Sequence Length Modifications Modified sequence Carbamidomethyl (C) Probabilities Oxidation (M) Probabilities Carbamidomethyl (C) Score Diffs Oxidation (M) Score Diffs Acetyl (Protein N-term) Carbamidomethyl (C) Oxidation (M) Missed cleavages Proteins Leading proteins Leading razor protein Type Raw file Experiment MS/MS m/z Charge m/z Mass Uncalibrated - Calibrated m/z [ppm] Uncalibrated - Calibrated m/z [Da] Mass error [ppm] Mass error [Da] Uncalibrated mass error [ppm] Uncalibrated mass error [Da] Max intensity m/z 0 Retention time Retention length Calibrated retention time Calibrated retention time start Calibrated retention time finish Retention time calibration Match time difference Match m/z difference Match q-value Match score Number of data points Number of scans Number of isotopic peaks PIF Fraction of total spectrum Base peak fraction PEP MS/MS count MS/MS scan number MS/MS scan numbers MS3 scan numbers Score Delta score Combinatorics Intensity Reverse Potential contaminant id Protein group IDs Peptide ID Mod. peptide ID MS/MS IDs Best MS/MS Carbamidomethyl (C) site IDs Oxidation (M) site IDs Taxonomy IDs Taxonomy names Mass deficit AAAARAMDP 9 Unmodified _AAAARAMDP_ 0 0 0 STK35|p.E487Ifs*22|1|0.07|ENSG00000125834|chr20:2117231-2117232|-/ATAAT|frameshift_variant;ENSG00000125834|ENST00000381482|STK35 STK35|p.E487Ifs*22|1|0.07|ENSG00000125834|chr20:2117231-2117232|-/ATAAT|frameshift_variant STK35|p.E487Ifs*22|1|0.07|ENSG00000125834|chr20:2117231-2117232|-/ATAAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21728515625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 92.862 1 92.862 92.362 93.362 0 0 0 0 0.23508 1 18160 18160 7.9102 0.62092 1 0 3395 0 0 0 0 -0.023875877026057424 AAAARWNHG 9 Unmodified _AAAARWNHG_ 0 0 0 ENST00000525752.5_1_11:62606897-62607060:-|nuORF ENST00000525752.5_1_11:62606897-62607060:-|nuORF ENST00000525752.5_1_11:62606897-62607060:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.2608947753906 2 477.23865 952.462747 -0.025579 -1.2207E-05 0.4953 0.00023637 0.46972 0.00022417 477.23882363121993 52.23 0.53203 52.23 51.898 52.43 0 35 14 4 0 0 0 0.45972 1 9918 9918 8.1555 8.1555 1 17216000 1 10902 1 1 1 1 -0.015386011251962373 AAAAVDVRT 9 Unmodified _AAAAVDVRT_ 0 0 0 ENSG00000151240|ENST00000280886|DIP2C;DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant ENSG00000151240|ENST00000280886|DIP2C ENSG00000151240|ENST00000280886|DIP2C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2168884277344 2 437.243067 872.47158 NaN NaN NaN NaN NaN NaN NaN 96.679 1 92.582 92.082 93.082 -4.0978 0 0 0 0.14843 1 18964 18964 30.637 3.7529 1 2 4855 2 2 2 2 0.03024327720618203 AAAEHPHP 8 Unmodified _AAAEHPHP_ 0 0 0 REV__ENST00000406453.3_1_7:5331370-5336744:+|nuORF REV__ENST00000406453.3_1_7:5331370-5336744:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2537841796875 2 415.201202 828.387851 NaN NaN NaN NaN NaN NaN NaN 53.026 1 49.939 49.439 50.439 -3.0876 0 0 0 0.21486 1 9758 9758 6.3541 1.5981 1 + 3 21391 3 3 3 3 -0.033207836564315585 AAAPGTPFCP 10 Unmodified _AAAPGTPFCP_ 0 0 0 REV__ENST00000564218.5_1_16:31448362-31454203:-|nuORF REV__ENST00000564218.5_1_16:31448362-31454203:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.1853942871094 3 311.149589 930.426938 NaN NaN NaN NaN NaN NaN NaN 73.109 1 73.109 72.609 73.609 0 0 0 0 0.22588 1 14190 14190 0.77653 0 1 + 4 23088 4 4 4 4 -0.04105819417077328 AAAPGTPFCP 10 Unmodified _AAAPGTPFCP_ 0 0 0 REV__ENST00000564218.5_1_16:31448362-31454203:-|nuORF REV__ENST00000564218.5_1_16:31448362-31454203:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.1961975097656 3 311.149589 930.426938 NaN NaN NaN NaN NaN NaN NaN 100.43 1 96.134 95.634 96.634 -4.297 0 0 0 0.22588 1 19209 19209 0.77653 0 1 + 5 23088 4 4 5 5 -0.04105819417077328 AAARPGGGAAA 11 Unmodified _AAARPGGGAAA_ 0 0 0 ENST00000481661.1_1_14:59931594-59931975:-|nuORF ENST00000481661.1_1_14:59931594-59931975:-|nuORF ENST00000481661.1_1_14:59931594-59931975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 435.24969482421875 2 435.233033 868.451513 NaN NaN NaN NaN NaN NaN NaN 55.627 1 52.743 52.243 53.243 -2.8837 0 0 0 0.22632 1 10650 10650 0.2986 0.17573 1 6 10380 5 5 6 6 0.012025767806676413 AAASLGDDR 9 Unmodified _AAASLGDDR_ 0 0 0 REV__ENST00000486144.1_1_15:44084574-44085282:+|nuORF REV__ENST00000486144.1_1_15:44084574-44085282:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 438.54827880859375 2 438.214506 874.414459 NaN NaN NaN NaN NaN NaN NaN 133.97 1 133.97 133.47 134.47 0 0 0 0 0.23508 1 26514 26514 7.9102 0 1 + 7 16564 6 6 7 7 -0.027771395557579126 AAAVWAVVS 9 Unmodified _AAAVWAVVS_ 0 0 0 ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23516845703125 2 437.245078 872.475603 NaN NaN NaN NaN NaN NaN NaN 96.589 1 92.491 91.991 92.991 -4.0978 0 0 0 0.22962 1 18944 18944 14.838 2.3067 1 8 2228 7 7 8 8 0.03426417214336652 AADDSSVKL 9 Unmodified _AADDSSVKL_ 0 0 0 ENST00000539960.1_1_11:60665249-60666641:-|nuORF;PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19 ENST00000539960.1_1_11:60665249-60666641:-|nuORF;PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7485656738281 2 453.232364 904.450176 -0.17357 -7.8668E-05 0.37322 0.00016916 0.19965 9.0489E-05 453.2324743614204 43.827 0.59077 41.037 40.736 41.327 -2.79 37 16 3 0 0 0 0.10083 1 8247 8247 55.503 27.874 1 4390400 9 11064;2565 8 8 9 9 -0.005871020987456177 AADDSSVKL 9 Unmodified _AADDSSVKL_ 0 0 0 ENST00000539960.1_1_11:60665249-60666641:-|nuORF;PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19 ENST00000539960.1_1_11:60665249-60666641:-|nuORF;PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7613830566406 2 453.232364 904.450176 -0.089341 -4.0492E-05 0.35511 0.00016095 0.26577 0.00012045 453.2324680314777 43.908 0.63833 41.142 40.722 41.36 -2.7661 39 17 3 0 0 0 0.037776 3 7951 7888;7951;7954 106.94 70.434 1 4524700 10 11064;2565 8 8 10;11;12 11 -0.005871020987456177 AADDSSVKL 9 Unmodified _AADDSSVKL_ 0 0 0 ENST00000539960.1_1_11:60665249-60666641:-|nuORF;PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19 ENST00000539960.1_1_11:60665249-60666641:-|nuORF;PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7489929199219 2 453.232364 904.450176 -0.10316 -4.6755E-05 0.30081 0.00013634 0.19765 8.9581E-05 453.23244798659465 43.92 0.59575 41.172 40.8 41.395 -2.7475 39 16 3 0 0 0 0.10083 1 7925 7925 55.503 23.386 1 4018100 11 11064;2565 8 8 13 13 -0.005871020987456177 AADEPVTVL 9 Unmodified _AADEPVTVL_ 0 0 0 ENSG00000173402|ENST00000308775|DAG1;DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2339172363281 2 457.745108 913.475663 -0.38557 -0.00017649 -2.0459 -0.00093651 -2.4315 -0.001113 457.74549050479243 105.66 0.83923 101.4 100.85 101.69 -4.2638 52 23 3 0 0 0 0.074448 1 20762 20762 36.81 30.419 1 3490800 12 6291 9 9 14 14 0.015463724236610688 AADGEQGRSA 10 Unmodified _AADGEQGRSA_ 0 0 0 REV__nc|ENSG00000105227|Q9BXM0-3|PRX REV__nc|ENSG00000105227|Q9BXM0-3|PRX MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23486328125 2 481.22032 960.426087 NaN NaN NaN NaN NaN NaN NaN 39.342 1 39.342 38.842 39.842 0 0 0 0 0.15474 1 7303 7303 36.127 8.4982 1 + 13 14971 10 10 15 15 -0.055709425324266704 AADGKGVVVV 10 Unmodified _AADGKGVVVV_ 0 0 0 nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28 nc|ENSG00000108107|P46779-4|RPL28 nc|ENSG00000108107|P46779-4|RPL28 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2250061035156 2 457.768917 913.523281 NaN NaN NaN NaN NaN NaN NaN 52.037 1 52.037 51.537 52.537 0 0 0 0 2.8426 1 9884 9884 24.991 10.153 1 14 2459 11 11 16 16 0.06306071414530834 AADGSVKL 8 Unmodified _AADGSVKL_ 0 0 0 ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4 ENSG00000136875|ENST00000374198|PRPF4 ENSG00000136875|ENST00000374198|PRPF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2154541015625 2 380.713611 759.412668 -0.06096 -2.3208E-05 0.074958 2.8538E-05 0.013998 5.3291E-06 380.71358744583466 37.378 0.55472 37.378 37.093 37.647 0 34 15 3 0 0 0 0.47729 3 6950 6897;6947;6950 51.63 21.789 1 3120000 15 4047 12 12 17;18;19 19 0.023338514262945864 AADGSVKL 8 Unmodified _AADGSVKL_ 0 0 0 ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4 ENSG00000136875|ENST00000374198|PRPF4 ENSG00000136875|ENST00000374198|PRPF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2080993652344 2 380.713611 759.412668 -0.5012 -0.00019081 0.48527 0.00018475 -0.015927 -6.0636E-06 380.7138058117411 39.592 0.59254 37.043 36.719 37.311 -2.5491 35 16 3 0 0 0 0.12259 4 7353 7351;7353;7363;7366 60.074 30.233 1 2672000 16 4047 12 12 20;21;22;23 21 0.023338514262945864 AAEAPEPSCTW 11 Unmodified _AAEAPEPSCTW_ 0 0 0 REV__ENST00000403496.6_1_1:32697415-32700590:-|nuORF REV__ENST00000403496.6_1_1:32697415-32700590:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71649169921875 3 387.834218 1160.48082 -0.27428 -0.00010638 -2.3811 -0.00092346 -2.6554 -0.0010298 388.1678814774627 44.079 0.31028 41.289 41.017 41.327 -2.79 12 8 2 0 0 0 0.96104 1 8260 8260 7.0371 2.1401 1 676530 + 17 21370 13 13 24 24 -0.0929969177602743 AAEAPEPSCTW 11 Unmodified _AAEAPEPSCTW_ 0 0 0 REV__ENST00000403496.6_1_1:32697415-32700590:-|nuORF REV__ENST00000403496.6_1_1:32697415-32700590:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 387.834218 1160.48082 -0.044255 -1.7163E-05 -3.2259 -0.0012511 -3.2702 -0.0012683 387.83300054162373 43.924 0.28247 41.158 41.078 41.36 -2.7661 -0.065373 -0.00024449 NaN 7.0371 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 445860 + 18 21370 13 13 -0.0929969177602743 AAEDSDDDEI 10 Unmodified _AAEDSDDDEI_ 0 0 0 ENST00000569150.1_1_16:25251139-25264321:-|nuORF;ENSG00000155592|ENST00000328086|ZKSCAN2;nc|ENSG00000155592|Q63HK3-2|ZKSCAN2;ENST00000565590.1_1_16:25258001-25268460:-|nuORF;ZKSCAN2|p.S593Afs*37|1|0.25|ENSG00000155592|chr16:25243990-25243990|G/-|frameshift_variant ENST00000569150.1_1_16:25251139-25264321:-|nuORF ENST00000569150.1_1_16:25251139-25264321:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2654418945312 2 540.204198 1078.39384 0.10272 5.5492E-05 1.1635 0.00062853 1.2662 0.00068402 540.204926922081 97.437 1.5101 93.517 93.126 94.636 -3.9194 132 43 4 0 0 0 0.36162 1 18676 18676 14.405 3.5064 1 145760000 19 5051 14 14 25 25 -0.14221819516751566 AAEDVMVAAPL 11 Unmodified _AAEDVMVAAPL_ 0 0 0 nc|ENSG00000154040|O75952-6|CABYR;nc|ENSG00000154040|O75952-2|CABYR;nc|ENSG00000154040|O75952|CABYR nc|ENSG00000154040|O75952-6|CABYR nc|ENSG00000154040|O75952-6|CABYR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7909545898438 2 543.778625 1085.5427 0.33697 0.00018324 -4.4654 -0.0024282 -4.1284 -0.002245 543.7770339134036 138.97 0.1808 134.12 134.04 134.22 -4.8492 6 4 2 0 0 0 0.38019 1 26798 26798 4.6037 1.0111 1 590660 20 12389 15 15 26 26 0.003346596431129001 AAEEAARVV 9 Unmodified _AAEEAARVV_ 0 0 0 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23388671875 2 458.248349 914.482145 0.27115 0.00012425 0.60116 0.00027548 0.87231 0.00039973 458.24830280608495 32.449 0.66179 32.449 32.188 32.85 0 28 18 2 0 0 0 0.25976 1 5876 5876 19.626 6.0111 1 1518300 + 21 14309 16 16 27 27 0.02148310375048368 AAEEAARVV 9 Unmodified _AAEEAARVV_ 0 0 0 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2337951660156 2 458.248349 914.482145 0.13577 6.2217E-05 1.2587 0.00057678 1.3944 0.000639 458.2482553841402 34.546 0.55554 32.293 31.977 32.532 -2.2527 31 15 3 0 0 0 0.25976 1 6059 6059 24.882 15.338 1 1401200 + 22 14309 16 16 28 28 0.02148310375048368 AAEEAARVV 9 Unmodified _AAEEAARVV_ 0 0 0 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23394775390625 2 458.248349 914.482145 0.35112 0.0001609 -0.17591 -8.0609E-05 0.17521 8.029E-05 458.2480115394669 34.571 0.4593 32.349 32.115 32.574 -2.2224 27 12 3 0 0 0 0.45972 1 6035 6035 8.1555 1.9497 1 1146500 + 23 14309 16 16 29 29 0.02148310375048368 AAEEPNAAV 9 Unmodified _AAEEPNAAV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2149658203125 2 436.211432 870.408311 0.15983 6.9718E-05 0.070974 3.096E-05 0.2308 0.00010068 436.2114014843742 33.921 1.5963 31.775 31.427 33.023 -2.1468 99 45 3 0 0 0 0.58804 1 5917 5917 13.906 2.2658 1 2627600 24 1874 17 17 30 30 -0.03207657787288554 AAEERKRPPS 10 Unmodified _AAEERKRPPS_ 0 0 0 REV__MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant REV__MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2100524902344 3 380.875516 1139.60472 -0.23551 -8.9698E-05 0.21538 8.2031E-05 -0.020129 -7.6668E-06 380.8755453901438 15.117 0.55951 15.117 14.878 15.438 0 33 15 4 0 0 0 0.65108 1 2275 2275 10.315 0 1 8663900 + 25 23885 18 18 31 31 0.04050147106499935 AAEESDSEEE 10 Unmodified _AAEESDSEEE_ 0 0 0 REV__nc|ENSG00000070814|Q13428-2|TCOF1 REV__nc|ENSG00000070814|Q13428-2|TCOF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7752075195312 2 548.201655 1094.38876 0.39974 0.00021914 1.1078 0.00060727 1.5075 0.00082641 548.2022697045247 67.812 0.90331 64.486 64.003 64.906 -3.3268 78 25 4 0 0 0 1.1036 1 12796 12796 19.362 9.2114 1 13271000 + 26 14268 19 19 32 32 -0.1546612337933766 AAEISAAAGL 10 Unmodified _AAEISAAAGL_ 0 0 0 REV__ENSG00000171914|ENST00000636159|TLN2 REV__ENSG00000171914|ENST00000636159|TLN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21466064453125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 30.508 1 28.615 28.115 29.115 -1.8928 0 0 0 0.22535 1 5234 5234 20.454 1.1966 1 + 27 18260 20 20 33 33 0.019015056264720442 AAEPSRPSGLR 11 Unmodified _AAEPSRPSGLR_ 0 0 0 REV__ENST00000561543.5_1_15:52971212-52971488:-|nuORF REV__ENST00000561543.5_1_15:52971212-52971488:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.211181640625 3 380.875516 1139.60472 -0.65189 -0.00024829 0.52315 0.00019925 -0.12875 -4.9037E-05 380.8756828772861 16.255 0.41595 15.039 14.834 15.25 -1.2159 29 11 5 0 0 0 0.42077 1 2545 2545 17.572 2.734 1 5370800 + 28 23056 21 21 34 34 0.04050147106477198 AAEPSRPSGLR 11 Unmodified _AAEPSRPSGLR_ 0 0 0 REV__ENST00000561543.5_1_15:52971212-52971488:-|nuORF REV__ENST00000561543.5_1_15:52971212-52971488:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.875516 1139.60472 -0.65189 -0.00024829 0.52315 0.00019925 -0.12875 -4.9037E-05 380.8756828772861 16.255 0.41595 15.039 14.834 15.25 -1.2159 -0.048184 0.00016008 NaN 17.572 29 11 5 NaN NaN NaN NaN 0 NaN NaN 0 5370800 + 29 23056 21 21 0.04050147106477198 AAEPSRPSGLR 11 Unmodified _AAEPSRPSGLR_ 0 0 0 REV__ENST00000561543.5_1_15:52971212-52971488:-|nuORF REV__ENST00000561543.5_1_15:52971212-52971488:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.875516 1139.60472 -0.51708 -0.00019694 0.40603 0.00015465 -0.11105 -4.2296E-05 380.87564461416366 16.327 0.30812 15.105 14.955 15.263 -1.2219 0.017854 2.6257E-05 NaN 17.572 24 8 5 NaN NaN NaN NaN 0 NaN NaN 0 5327500 + 30 23056 21 21 0.04050147106477198 AAESAALK 8 Unmodified _AAESAALK_ 0 0 0 REV__ACADS|p.A358T|1|0.32|ENSG00000122971|chr12:120739182-120739182|G/A|missense_variant REV__ACADS|p.A358T|1|0.32|ENSG00000122971|chr12:120739182-120739182|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21514892578125 2 380.713611 759.412668 -0.06096 -2.3208E-05 0.074958 2.8538E-05 0.013998 5.3291E-06 380.71358744583466 37.378 0.55472 37.378 37.093 37.647 0 34 15 3 0 0 0 0.12867 1 6900 6900 57.471 7.5383 1 3120000 + 31 12911 22 22 35 35 0.023338514262832177 AAEVCDQPSPY 11 Unmodified _AAEVCDQPSPY_ 0 0 0 REV__ENST00000467926.5_1_22:21322139-21327873:+|nuORF REV__ENST00000467926.5_1_22:21322139-21327873:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2538452148438 2 590.252971 1178.49139 NaN NaN NaN NaN NaN NaN NaN 81.466 1 77.909 77.409 78.409 -3.557 0 0 0 0.22632 1 15910 15910 0.58532 0.17705 1 + 32 12991 23 23 36 36 -0.0907170912159927 AAFDGGFTV 9 Unmodified _AAFDGGFTV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 885.4180297851562 1 884.414859 883.407583 0.27674 0.00024475 0.0069875 6.1798E-06 0.28373 0.00025093 884.4148142085484 135.61 0.80731 130.97 130.62 131.43 -4.6399 49 22 3 0 0 0 0.44262 1 26743 26743 23.148 6.2061 1 13929000 33 2153 24 24 37 37 -0.03878452436322277 AAFDGGFTV 9 Unmodified _AAFDGGFTV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 885.4185180664062 1 884.414859 883.407583 0.29147 0.00025778 0.11402 0.00010084 0.40548 0.00035861 884.4147815638107 135.87 0.81454 130.98 130.53 131.34 -4.8951 37 22 2 0 0 0 0.037776 4 26062 26062;26064;26108;26150 57.471 26.835 1 11912000 34 2153 24 24 38;39;40;41 38 -0.03878452436322277 AAFDGGFTV 9 Unmodified _AAFDGGFTV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 885.4188232421875 1 884.414859 883.407583 0.37612 0.00033265 0.068262 6.0372E-05 0.44438 0.00039302 884.4147646347116 135.79 0.74091 130.96 130.52 131.27 -4.8307 45 20 3 0 0 0 0.039965 6 26182 26091;26095;26141;26142;26182;26186 67.344 25.354 1 12056000 35 2153 24 24 42;43;44;45;46;47 46 -0.03878452436322277 AAFDGGFTV 9 Unmodified _AAFDGGFTV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 884.414859 883.407583 0.51132 0.00045222 -0.28253 -0.00024987 0.22879 0.00020235 884.4143133464551 130.71 0.60173 130.71 130.37 130.97 0 -0.19552 -0.0002562 NaN 8.9129 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 7896100 36 2153 24 24 -0.03878452436322277 AAFESHRGMFR 11 Unmodified _AAFESHRGMFR_ 0 0 0 REV__nc|ENSG00000157593|Q8TB61-5|SLC35B2 REV__nc|ENSG00000157593|Q8TB61-5|SLC35B2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22821044921875 3 436.880384 1307.61932 0.26413 0.00011539 0.77369 0.00033801 1.0378 0.00045341 437.2162070348492 101.84 1.5946 97.821 96.893 98.488 -4.0212 55 45 2 0 0 0 0.66087 1 19547 19547 1.4551 0 1 1033100 + 37 17300 25 25 48 48 -0.022181040170607957 AAFFTTTD 8 Unmodified _AAFFTTTD_ 0 0 0 ENSG00000232030|ENST00000416929|MAGEB6B ENSG00000232030|ENST00000416929|MAGEB6B ENSG00000232030|ENST00000416929|MAGEB6B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2171630859375 2 437.203076 872.391599 NaN NaN NaN NaN NaN NaN NaN 158.53 1 153.26 152.76 153.76 -5.2748 0 0 0 0.21486 1 30768 30768 5.7604 4.9668 1 38 7810 26 26 49 49 -0.04970158673245351 AAFGIFFF 8 Unmodified _AAFGIFFF_ 0 0 0 REV__ENSG00000131055|ENST00000376075|COX4I2 REV__ENSG00000131055|ENST00000376075|COX4I2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23895263671875 2 460.239264 918.463976 NaN NaN NaN NaN NaN NaN NaN 8.8986 1 7.8341 7.3341 8.3341 -1.0645 0 0 0 0.21486 1 916 916 0.79363 0 1 + 39 16052 27 27 50 50 0.001482201909880132 AAFGIFFF 8 Unmodified _AAFGIFFF_ 0 0 0 REV__ENSG00000131055|ENST00000376075|COX4I2 REV__ENSG00000131055|ENST00000376075|COX4I2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2391357421875 2 460.239264 918.463976 NaN NaN NaN NaN NaN NaN NaN 159.04 1 153.77 153.27 154.27 -5.2748 0 0 0 0.23711 1 30869 30869 0.12286 0 1 + 40 16052 27 27 51 51 0.001482201909880132 AAFGIFFF 8 Unmodified _AAFGIFFF_ 0 0 0 REV__ENSG00000131055|ENST00000376075|COX4I2 REV__ENSG00000131055|ENST00000376075|COX4I2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2402648925781 2 460.239264 918.463976 NaN NaN NaN NaN NaN NaN NaN 159.48 1 154.2 153.7 154.7 -5.2748 0 0 0 0.23711 1 30953 30953 0.12286 0 1 + 41 16052 27 27 52 52 0.001482201909880132 AAFGIFFF 8 Unmodified _AAFGIFFF_ 0 0 0 REV__ENSG00000131055|ENST00000376075|COX4I2 REV__ENSG00000131055|ENST00000376075|COX4I2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2410888671875 2 460.239264 918.463976 NaN NaN NaN NaN NaN NaN NaN 160.17 1 154.94 154.44 155.44 -5.2299 0 0 0 0.23294 1 31096 31096 0.62683 0 1 + 42 16052 27 27 53 53 0.001482201909880132 AAFGIFFF 8 Unmodified _AAFGIFFF_ 0 0 0 REV__ENSG00000131055|ENST00000376075|COX4I2 REV__ENSG00000131055|ENST00000376075|COX4I2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23760986328125 2 460.239264 918.463976 NaN NaN NaN NaN NaN NaN NaN 21.033 1 19.312 18.812 19.812 -1.7211 0 0 0 0.2396 1 3267 3267 0.12286 0 1 + 43 16052 27 27 54 54 0.001482201909880132 AAFHLQCCNPP 11 Unmodified _AAFHLQCCNPP_ 0 0 0 nc|ENSG00000109118|Q96QT6-2|PHF12;nc|ENSG00000109118|Q96QT6-5|PHF12;PHF12|p.P882Qfs*30|1|0.22|ENSG00000109118|chr17:28906891-28906891|G/-|frameshift_variant;ENSG00000109118|ENST00000332830|PHF12;ENST00000483934.5_1_17:27253816-27277921:-|nuORF;ENST00000582436.5_1_17:27253816-27277966:-|nuORF;PHF12|p.N253Mfs*9|1|0.47|ENSG00000109118|chr17:28921766-28921766|T/-|frameshift_variant nc|ENSG00000109118|Q96QT6-2|PHF12 nc|ENSG00000109118|Q96QT6-2|PHF12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 400.84832763671875 3 400.847804 1199.52158 NaN NaN NaN NaN NaN NaN NaN 9.3655 1 8.3309 7.8309 8.8309 -1.0347 0 0 0 0.22632 1 951 951 0.026206 0.022825 1 44 2518 28 28 55 55 -0.0701962893738255 AAFKGWPP 8 Unmodified _AAFKGWPP_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;DIP2A|p.P1075Rfs*15|1|0.35|ENSG00000160305|chr21:46554640-46554640|C/-|frameshift_variant;nc|ENSG00000160305|Q14689-5|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A nc|ENSG00000160305|Q14689-6|DIP2A nc|ENSG00000160305|Q14689-6|DIP2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.235595703125 2 437.234513 872.454474 NaN NaN NaN NaN NaN NaN NaN 62.305 1 59.066 58.566 59.566 -3.2395 0 0 0 0.21486 1 11678 11678 8.5933 2.2392 1 45 5248 29 29 56 56 0.013144519054662851 AAFKLLARQ 9 Unmodified _AAFKLLARQ_ 0 0 0 REV__ENST00000456871.1_1_10:14765697-14765904:-|nuORF REV__ENST00000456871.1_1_10:14765697-14765904:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.8573913574219 3 339.87831 1016.6131 NaN NaN NaN NaN NaN NaN NaN 44.663 1 41.897 41.397 42.397 -2.7661 0 0 0 0.19654 1 8092 8092 0.40827 0.15679 1 + 46 21855 30 30 57 57 0.10545745813737994 AAFLQLLF 8 Unmodified _AAFLQLLF_ 0 0 0 REV__ENST00000375650.4_1_6:31797726-31797780:+|nuORF REV__ENST00000375650.4_1_6:31797726-31797780:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.9059143066406 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 67.265 1 67.265 66.765 67.765 0 0 0 0 0.21486 1 13001 13001 0.45834 0 1 + 47 21068 31 31 58 58 0.06848464770860119 AAFTGKLHGSY 11 Unmodified _AAFTGKLHGSY_ 0 0 0 REV__ENSG00000176273|ENST00000427197|SLC35G1 REV__ENSG00000176273|ENST00000427197|SLC35G1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3257446289062 2 576.29583 1150.57711 NaN NaN NaN NaN NaN NaN NaN 116.55 1 111.97 111.47 112.47 -4.5815 0 0 0 0.22632 1 22366 22366 1.4074 0.1926 1 + 48 18505 32 32 59 59 0.007842438462375867 AAGGAHSFVL 10 Unmodified _AAGGAHSFVL_ 0 0 0 ENST00000473533.6_1_10:69785383-69797913:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4 ENST00000473533.6_1_10:69785383-69797913:-|nuORF ENST00000473533.6_1_10:69785383-69797913:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2459411621094 2 465.245609 928.476666 -0.22469 -0.00010453 0.31253 0.0001454 0.087846 4.087E-05 465.245698808685 51.345 0.76092 48.462 48.07 48.831 -2.8824 40 21 2 0 0 0 0.664 1 9699 9699 14.838 14.838 1 2846300 49 4753 33 33 60 60 0.009566315832444161 AAGLSVSVTL 10 Unmodified _AAGLSVSVTL_ 0 0 0 REV__nc|ENSG00000050438|Q2Y0W8-8|SLC4A8 REV__nc|ENSG00000050438|Q2Y0W8-8|SLC4A8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.75384521484375 2 459.26875 916.522947 -0.061114 -2.8068E-05 0.3036 0.00013944 0.24249 0.00011137 459.26882654383206 138.74 0.74237 134.09 133.7 134.45 -4.6439 48 20 3 0 0 0 0.48196 1 27425 27425 0.063865 0 1 9695300 + 50 23938 34 34 61 61 0.06134651694674176 AAGLVTVG 8 Unmodified _AAGLVTVG_ 0 0 0 REV__ENST00000565149.5_1_16:88718476-88718593:-|nuORF REV__ENST00000565149.5_1_16:88718476-88718593:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.0916748046875 2 344.205421 686.39629 NaN NaN NaN NaN NaN NaN NaN 125.35 1 125.35 124.85 125.85 0 0 0 0 0.21486 1 24724 24724 0.79363 0 1 + 51 23107 35 35 62 62 0.040547702601998026 AAGPPISEGKY 11 Unmodified _AAGPPISEGKY_ 0 0 0 ENSG00000204539|ENST00000376288|CDSN ENSG00000204539|ENST00000376288|CDSN ENSG00000204539|ENST00000376288|CDSN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7897338867188 2 545.282389 1088.55022 0.15354 8.3721E-05 -0.50992 -0.00027805 -0.35638 -0.00019433 545.2820789550887 86.226 1.1745 82.498 82.009 83.184 -3.727 128 32 7 0 0 0 0.68348 1 16866 16866 12.873 0.63195 1 317050000 52 7587 36 36 63 63 0.009491352350551097 AAGVCPVP 8 Unmodified _AAGVCPVP_ 0 0 0 nc|ENSG00000258366|Q9NZ71-2|RTEL1 nc|ENSG00000258366|Q9NZ71-2|RTEL1 nc|ENSG00000258366|Q9NZ71-2|RTEL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.1914367675781 2 357.186174 712.357796 NaN NaN NaN NaN NaN NaN NaN 60.664 1 60.664 60.164 61.164 0 0 0 0 0.23294 1 11635 11635 0.68139 0 1 53 12634 37 37 64 64 -0.009888586459851467 AAHKVKELG 9 Unmodified _AAHKVKELG_ 0 0 0 ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENST00000534521.5_1_11:111612322-111631898:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.039306640625 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 66.902 1 66.902 66.402 67.402 0 0 0 0 0.23508 1 12927 12927 1.0715 0 1 54 4100 38 38 65 65 0.07245180025722675 AAHKVKELG 9 Unmodified _AAHKVKELG_ 0 0 0 ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENST00000534521.5_1_11:111612322-111631898:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.07568359375 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 91.12 1 91.12 90.62 91.62 0 0 0 0 0.23508 1 17805 17805 5.2969 0 1 55 4100 38 38 66 66 0.07245180025722675 AAHKVKELG 9 Unmodified _AAHKVKELG_ 0 0 0 ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENST00000534521.5_1_11:111612322-111631898:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.1700134277344 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 114.66 1 114.66 114.16 115.16 0 0 0 0 0.23508 1 22556 22556 1.0715 0 1 56 4100 38 38 67 67 0.07245180025722675 AAHKVKELG 9 Unmodified _AAHKVKELG_ 0 0 0 ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENST00000534521.5_1_11:111612322-111631898:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.1698913574219 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 116.23 1 116.23 115.73 116.73 0 0 0 0 0.23508 1 22884 22884 1.0715 0 1 57 4100 38 38 68 68 0.07245180025722675 AAHKVKELG 9 Unmodified _AAHKVKELG_ 0 0 0 ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENST00000534521.5_1_11:111612322-111631898:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.19110107421875 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 111.53 1 107.11 106.61 107.61 -4.4231 0 0 0 0.23508 1 21977 21977 2.7352 0 1 58 4100 38 38 69 69 0.07245180025722675 AAHKVKELG 9 Unmodified _AAHKVKELG_ 0 0 0 ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENST00000534521.5_1_11:111612322-111631898:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.19073486328125 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 122 1 117.31 116.81 117.81 -4.6873 0 0 0 0.23508 1 23422 23422 2.7352 0 1 59 4100 38 38 70 70 0.07245180025722675 AAHKVKELG 9 Unmodified _AAHKVKELG_ 0 0 0 ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENST00000534521.5_1_11:111612322-111631898:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.20660400390625 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 114.24 1 109.92 109.42 110.42 -4.3136 0 0 0 0.23508 1 22006 22006 2.7352 0 1 60 4100 38 38 71 71 0.07245180025722675 AAHKVKELG 9 Unmodified _AAHKVKELG_ 0 0 0 ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENST00000534521.5_1_11:111612322-111631898:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.1201477050781 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 153.3 1 148.08 147.58 148.58 -5.2209 0 0 0 0.23508 1 29714 29714 2.7352 0 1 61 4100 38 38 72 72 0.07245180025722675 AAKGAGRVLT 10 Unmodified _AAKGAGRVLT_ 0 0 0 ENST00000594723.1_1_19:49138672-49140251:-|nuORF ENST00000594723.1_1_19:49138672-49140251:-|nuORF ENST00000594723.1_1_19:49138672-49140251:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 473.2918395996094 2 472.287808 942.561064 -0.070843 -3.3458E-05 0.35099 0.00016577 0.28015 0.00013231 472.2878475868305 155.12 0.90523 155.12 154.68 155.59 0 64 25 3 0 0 0 0.51405 1 31057 31057 3.8763 0.59502 1 15467000 62 11654 39 39 73 73 0.08748582399982752 AALCVPWR 8 Unmodified _AALCVPWR_ 0 0 0 REV__TECPR1|p.R696C|1|0.26|ENSG00000205356|chr7:98231262-98231262|G/A|missense_variant REV__TECPR1|p.R696C|1|0.26|ENSG00000205356|chr7:98231262-98231262|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2375183105469 2 458.247098 914.479642 NaN NaN NaN NaN NaN NaN NaN 117 1 112.42 111.92 112.92 -4.5815 0 0 0 0.1742 1 22449 22449 1.7423 0 1 + 63 24783 40 40 74 74 0.018981834363898997 AALGALAY 8 Unmodified _AALGALAY_ 0 0 0 REV__nc|ENSG00000180739|Q9H228-2|S1PR5 REV__nc|ENSG00000180739|Q9H228-2|S1PR5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21258544921875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 92.333 1 88.525 88.025 89.025 -3.8083 0 0 0 0.21486 1 17691 17691 2.8892 0 1 + 64 24195 41 41 75 75 0.027670567772247523 AALHGKFR 8 Unmodified _AALHGKFR_ 0 0 0 nc|ENSG00000121964|Q4AE62-6|GTDC1;nc|ENSG00000121964|Q4AE62-2|GTDC1;nc|ENSG00000121964|Q4AE62-5|GTDC1;ENSG00000121964|ENST00000682281|GTDC1 nc|ENSG00000121964|Q4AE62-6|GTDC1 nc|ENSG00000121964|Q4AE62-6|GTDC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.1228332519531 2 450.264136 898.51372 NaN NaN NaN NaN NaN NaN NaN 150.69 1 145.57 145.07 146.07 -5.1204 0 0 0 0.21486 1 29207 29207 5.2307 0 1 65 3200 42 42 76 76 0.06040347919645228 AALHHGGG 8 Unmodified _AALHHGGG_ 0 0 0 REV__ENSG00000213023|ENST00000600079|SYT3 REV__ENSG00000213023|ENST00000600079|SYT3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2037353515625 2 360.182812 718.351071 NaN NaN NaN NaN NaN NaN NaN 40.281 1 37.647 37.147 38.147 -2.6348 0 0 0 0.2396 1 7502 7502 0.0082765 0 1 + 66 19632 43 43 77 77 -0.019370354823308844 AALKALKYLF 10 Unmodified _AALKALKYLF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 569.3563232421875 2 569.35516 1136.69577 NaN NaN NaN NaN NaN NaN NaN 13.052 1 11.923 11.423 12.423 -1.1293 0 0 0 2.8426 1 1657 1657 0.26539 0.19213 1 67 4703 44 44 78 78 0.13288642821862595 AALLFSESAKS 11 Unmodified _AALLFSESAKS_ 0 0 0 REV__ENSG00000096060|ENST00000357266|FKBP5 REV__ENSG00000096060|ENST00000357266|FKBP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.22174072265625 3 375.20464 1122.59209 -0.5114 -0.00019188 -2.3054 -0.00086498 -2.8168 -0.0010569 375.2036641754028 16.276 0.37503 15.054 14.921 15.296 -1.2219 14 10 2 0 0 0 0.81642 1 2342 2342 1.4551 0.26178 1 266300 + 68 14619 45 45 79 79 0.035696909235639396 AALLHRSF 8 Unmodified _AALLHRSF_ 0 0 0 ENST00000484979.5_1_13:58206389-58206503:+|nuORF ENST00000484979.5_1_13:58206389-58206503:+|nuORF ENST00000484979.5_1_13:58206389-58206503:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23828125 2 457.763969 913.513385 NaN NaN NaN NaN NaN NaN NaN 118.77 1 114.36 113.86 114.86 -4.4088 0 0 0 0.21486 1 22856 22856 8.5933 2.8329 1 69 10437 46 46 80 80 0.05316928199795257 AALLHTWV 8 Unmodified _AALLHTWV_ 0 0 0 REV__PAQR8|p.F163Sfs*45|1|0.32|ENSG00000170915|chr6:52403699-52403702|TTTC/-|frameshift_variant REV__PAQR8|p.F163Sfs*45|1|0.32|ENSG00000170915|chr6:52403699-52403702|TTTC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.17572021484375 3 304.176356 909.507237 NaN NaN NaN NaN NaN NaN NaN 68.516 1 68.516 68.016 69.016 0 0 0 0 0.21486 1 13250 13250 0.45834 0 1 + 70 18190 47 47 81 81 0.048864099682646156 AALLHTWV 8 Unmodified _AALLHTWV_ 0 0 0 REV__PAQR8|p.F163Sfs*45|1|0.32|ENSG00000170915|chr6:52403699-52403702|TTTC/-|frameshift_variant REV__PAQR8|p.F163Sfs*45|1|0.32|ENSG00000170915|chr6:52403699-52403702|TTTC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.0397644042969 3 304.176356 909.507237 -0.013907 -4.2302E-06 -1.2008 -0.00036527 -1.2148 -0.0003695 304.1758971618835 45.701 1.0001 42.836 42.484 43.484 -2.8653 36 28 2 0 0 0 8448 1 8238 8238 0 0 1 1639900 + 71 18190 47 47 82 82 0.048864099682646156 AALLQKAVD 9 Unmodified _AALLQKAVD_ 0 0 0 REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF;REV__ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24993896484375 2 464.776742 927.538931 -0.039714 -1.8458E-05 -3.7634 -0.0017492 -3.8031 -0.0017676 464.77631080446133 100.46 0.73061 96.296 95.869 96.6 -4.1594 30 20 2 0 0 0 0.5428 1 19805 19805 2.6312 0 1 1127100 + 72 17933;13052 48 48 83 83 0.07226357931551775 AALQAAVET 9 Unmodified _AALQAAVET_ 0 0 0 REV__ENSG00000116117|ENST00000406610|PARD3B REV__ENSG00000116117|ENST00000406610|PARD3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23583984375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 76.949 1 73.534 73.034 74.034 -3.4151 0 0 0 0.23508 1 15021 15021 10.824 0.75 1 + 73 15468 49 49 84 84 0.019015056264720442 AALVLLAPPP 10 Unmodified _AALVLLAPPP_ 0 0 0 ENST00000262158.6_1_18:46476255-46476423:-|nuORF ENST00000262158.6_1_18:46476255-46476423:-|nuORF ENST00000262158.6_1_18:46476255-46476423:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77996826171875 2 481.307678 960.600803 -0.00058694 -2.825E-07 0.057714 2.7778E-05 0.057127 2.7496E-05 481.3076757320442 59.524 0.55888 56.591 56.33 56.889 -2.9333 27 15 2 0 0 0 0.76159 1 11421 11421 4.3292 3.5356 1 2306000 74 8308 50 50 85 85 0.1189270935069544 AANPEEAAV 9 Unmodified _AANPEEAAV_ 0 0 0 REV__ENSG00000096384|ENST00000371646|HSP90AB1 REV__ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21514892578125 2 436.211432 870.408311 0.15983 6.9718E-05 0.070974 3.096E-05 0.2308 0.00010068 436.2114014843742 33.921 1.5963 31.775 31.427 33.023 -2.1468 99 45 3 0 0 0 0.57447 1 5965 5965 14.838 0.93222 1 2627600 + 75 14621 51 51 86 86 -0.03207657787288554 AANPEEAAV 9 Unmodified _AANPEEAAV_ 0 0 0 REV__ENSG00000096384|ENST00000371646|HSP90AB1 REV__ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 436.211432 870.408311 0.17786 7.7585E-05 0.016073 7.011E-06 0.19393 8.4596E-05 436.21141121823035 34.189 1.5317 31.973 31.458 32.99 -2.2158 0.11426 1.8363E-05 NaN 14.838 68 43 2 NaN NaN NaN NaN 0 NaN NaN 0 1163800 + 76 14621 51 51 -0.03207657787288554 AANTSTVEL 9 Unmodified _AANTSTVEL_ 0 0 0 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7581481933594 2 453.232364 904.450176 0.46427 0.00021042 -1.2705 -0.00057581 -0.80618 -0.00036539 453.2306130130625 49.806 1.6902 49.806 49.019 50.709 0 76 48 2 0 0 0 0.20054 1 9436 9436 0.87518 0.6237 1 1412000 77 6208 52 52 87 87 -0.005871020987456177 AAPAFEPGR 9 Unmodified _AAPAFEPGR_ 0 0 0 nc|ENSG00000123737|Q06265-3|EXOSC9;nc|ENSG00000123737|Q06265-4|EXOSC9;ENST00000509980.5_1_4:122722579-122736524:+|nuORF;ENSG00000123737|ENST00000243498|EXOSC9;nc|ENSG00000123737|Q06265-2|EXOSC9;ENST00000508212.5_1_4:122723919-122731001:+|nuORF nc|ENSG00000123737|Q06265-3|EXOSC9 nc|ENSG00000123737|Q06265-3|EXOSC9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2383728027344 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 157.6 1 157.6 157.1 158.1 0 0 0 0 0.23508 1 31634 31634 8.5933 0.68312 1 78 3281 53 53 88 88 0.0003634506618936939 AAPGVQPLPL 10 Unmodified _AAPGVQPLPL_ 0 0 0 REV__ENST00000517503.1_3_8:144103316-144103727:+|nuORF REV__ENST00000517503.1_3_8:144103316-144103727:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78741455078125 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 117.82 1 117.82 117.32 118.32 0 0 0 0 0.21574 1 23208 23208 25.399 0.72543 1 + 79 22599 54 54 89 89 0.07734948311224343 AAPHKRYLPV 10 Unmodified _AAPHKRYLPV_ 0 0 0 REV__ENSG00000176715|ENST00000614302|ACSF3 REV__ENSG00000176715|ENST00000614302|ACSF3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3364868164062 2 576.337833 1150.66111 NaN NaN NaN NaN NaN NaN NaN 64.464 1 61.466 60.966 61.966 -2.9975 0 0 0 0.22588 1 12468 12468 7.2892 0.56607 1 + 80 18519 55 55 90 90 0.09180819733774115 AAPIAHFINII 11 Unmodified _AAPIAHFINII_ 0 0 0 REV__ENSG00000206043|ENST00000579455|C18orf63 REV__ENSG00000206043|ENST00000579455|C18orf63 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.276123046875 2 590.347866 1178.68118 NaN NaN NaN NaN NaN NaN NaN 144.13 1 139.47 138.97 139.97 -4.6694 0 0 0 0.23264 1 28530 28530 6.2058 0 1 + 81 19609 56 56 91 91 0.09898570673749418 AAPKGPVGAPP 11 Unmodified _AAPKGPVGAPP_ 0 0 0 REV__ENSG00000185504|ENST00000327787|FAAP100 REV__ENSG00000185504|ENST00000327787|FAAP100 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77850341796875 2 481.276909 960.539266 -0.24277 -0.00011684 0.50743 0.00024421 0.26466 0.00012737 481.277128205733 57.277 1.9408 57.277 56.536 58.477 0 96 55 2 0 0 0 0.52697 2 10886 10827;10886 0.58532 0 1 1919100 + 82 18972 57 57 92;93 93 0.057417776514284924 AAPKGPVGAPP 11 Unmodified _AAPKGPVGAPP_ 0 0 0 REV__ENSG00000185504|ENST00000327787|FAAP100 REV__ENSG00000185504|ENST00000327787|FAAP100 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77032470703125 2 481.276909 960.539266 0.093983 4.5232E-05 0.02894 1.3928E-05 0.12292 5.916E-05 481.27692959380755 60.579 1.8293 57.355 56.533 58.362 -3.2237 85 51 2 0 0 0 0.52697 1 11191 11191 0.2986 0.2986 1 1364400 + 83 18972 57 57 94 94 0.057417776514284924 AAPLELYVFR 10 Unmodified _AAPLELYVFR_ 0 0 0 REV__RELN|p.H3353Tfs*46|1|0.25|ENSG00000189056|chr7:103483777-103483777|G/-|frameshift_variant REV__RELN|p.H3353Tfs*46|1|0.25|ENSG00000189056|chr7:103483777-103483777|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 589.8353881835938 2 589.832049 1177.64954 NaN NaN NaN NaN NaN NaN NaN 171.58 1 166.79 166.29 167.29 -4.7898 0 0 0 0.22588 1 34895 34895 6.2058 0 1 + 84 19188 58 58 95 95 0.06782577919807409 AAPLQKAA 8 Unmodified _AAPLQKAA_ 0 0 0 REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 385.2327880859375 2 385.231971 768.449388 NaN NaN NaN NaN NaN NaN NaN 136.67 1 131.77 131.27 132.27 -4.8951 0 0 0 0.23749 1 26267 26267 0.063987 0.034705 1 + 85 19033 59 59 96 96 0.055901480428474315 AAPLTTAVP 9 Unmodified _AAPLTTAVP_ 0 0 0 REV__ATXN1|p.P150Qfs*38|2|0.39|ENSG00000124788|chr6:16327862-16327862|G/-|frameshift_variant REV__ATXN1|p.P150Qfs*38|2|0.39|ENSG00000124788|chr6:16327862-16327862|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4105834960938 1 840.482545 839.475269 0.68308 0.00057412 -0.41824 -0.00035153 0.26484 0.00022259 840.4820799338029 107.18 1.0802 107.18 106.72 107.8 0 87 30 4 0 0 0 0.35443 1 21087 21087 28.487 0 1 62933000 + 86 13159 60 60 97 97 0.04910997494471303 AAPLTTAVP 9 Unmodified _AAPLTTAVP_ 0 0 0 REV__ATXN1|p.P150Qfs*38|2|0.39|ENSG00000124788|chr6:16327862-16327862|G/-|frameshift_variant REV__ATXN1|p.P150Qfs*38|2|0.39|ENSG00000124788|chr6:16327862-16327862|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 840.482545 839.475269 0.68308 0.00057412 -0.41824 -0.00035153 0.26484 0.00022259 840.4820799338029 107.18 1.0802 107.18 106.72 107.8 0 0.023684 -0.00021651 NaN 28.487 87 30 4 NaN NaN NaN NaN 0 NaN NaN 0 62933000 + 87 13159 60 60 0.04910997494471303 AAPLTTAVP 9 Unmodified _AAPLTTAVP_ 0 0 0 REV__ATXN1|p.P150Qfs*38|2|0.39|ENSG00000124788|chr6:16327862-16327862|G/-|frameshift_variant REV__ATXN1|p.P150Qfs*38|2|0.39|ENSG00000124788|chr6:16327862-16327862|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 840.482545 839.475269 0.10295 8.6529E-05 0.096561 8.1158E-05 0.19951 0.00016769 840.4824905671862 111.53 0.97898 107.1 106.58 107.55 -4.4231 -0.056842 0.00021617 NaN 28.487 86 27 4 NaN NaN NaN NaN 0 NaN NaN 0 76752000 + 88 13159 60 60 0.04910997494471303 AAPLTTAVP 9 Unmodified _AAPLTTAVP_ 0 0 0 REV__ATXN1|p.P150Qfs*38|2|0.39|ENSG00000124788|chr6:16327862-16327862|G/-|frameshift_variant REV__ATXN1|p.P150Qfs*38|2|0.39|ENSG00000124788|chr6:16327862-16327862|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 840.482545 839.475269 0.16029 0.00013472 0.19345 0.00016259 0.35374 0.00029732 840.4826605825793 111.65 1.0113 107.16 106.72 107.73 -4.4915 0.0021292 0.00029761 NaN 28.487 84 28 4 NaN NaN NaN NaN 0 NaN NaN 0 66910000 + 89 13159 60 60 0.04910997494471303 AAPSCCCASPA 11 Unmodified _AAPSCCCASPA_ 0 0 0 REV__ENSG00000181045|ENST00000361193|SLC26A11 REV__ENSG00000181045|ENST00000361193|SLC26A11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 329.12677001953125 3 327.459329 979.356158 -0.17405 -5.6993E-05 1.4548 0.00047637 1.2807 0.00041938 327.46119571782197 99.671 0.86777 99.671 99.267 100.13 0 84 24 6 0 0 0 0.60996 1 19550 19550 0.65807 0.62879 1 4857700 + 90 18714 61 61 98 98 -0.13434603788562072 AAPSKKLL 8 Unmodified _AAPSKKLL_ 0 0 0 nc|ENSG00000178795|Q6W3E5|GDPD4 nc|ENSG00000178795|Q6W3E5|GDPD4 nc|ENSG00000178795|Q6W3E5|GDPD4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 414.2691955566406 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 50.572 1 50.572 50.072 51.072 0 0 0 0 0.21486 1 9580 9580 2.8892 0.82947 1 91 12488 62 62 99 99 0.1074358062810461 AAPTLGPG 8 Unmodified _AAPTLGPG_ 0 0 0 REV__ENST00000524192.6_1_20:61904210-61909556:+|nuORF REV__ENST00000524192.6_1_20:61904210-61909556:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.0164489746094 2 342.189771 682.36499 NaN NaN NaN NaN NaN NaN NaN 41.406 1 41.406 40.906 41.906 0 0 0 0 0.21486 1 7723 7723 6.3541 0 1 + 92 22619 63 63 100 100 0.011101972261030824 AAQKLMSKF 9 Unmodified _AAQKLMSKF_ 0 0 0 REV__nc|ENSG00000196504|O75400-3|PRPF40A REV__nc|ENSG00000196504|O75400-3|PRPF40A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.274169921875 2 512.28642 1022.55829 NaN NaN NaN NaN NaN NaN NaN 128.75 1 128.75 128.25 129.25 0 0 0 0 0.19679 1 25428 25428 0.40827 0.14288 1 + 93 24227 64 64 101 101 0.04790990950834839 AAQPEPAT 8 Unmodified _AAQPEPAT_ 0 0 0 ENST00000570718.5_1_17:4618488-4619298:+|nuORF ENST00000570718.5_1_17:4618488-4619298:+|nuORF ENST00000570718.5_1_17:4618488-4619298:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3870849609375 1 784.383559 783.376283 -0.11716 -9.1897E-05 0.94025 0.00073752 0.82309 0.00064562 784.3842379832024 24.189 0.58942 22.336 22.12 22.71 -1.8534 34 16 3 0 0 0 8448 1 3991 3991 1.3295 0.70271 1 2856700 94 11417 65 65 102 102 -0.024070254704270155 AAQTAKKIDP 10 Unmodified _AAQTAKKIDP_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2646484375 2 521.798206 1041.58186 -0.57403 -0.00029953 -0.53792 -0.00028069 -1.1119 -0.00058021 522.2978038784256 128.28 0.17763 123.46 123.34 123.52 -4.817 6 4 2 0 0 0 0.46962 1 24620 24620 0.84494 0.63761 1 1658000 + 95 18819 66 66 103 103 0.0627312798899311 AARQVPVI 8 Unmodified _AARQVPVI_ 0 0 0 REV__nc|ENSG00000166049|Q8IV76-2|PASD1 REV__nc|ENSG00000166049|Q8IV76-2|PASD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.266357421875 2 427.266345 852.518136 -0.33356 -0.00014252 0.44005 0.00018802 0.10649 4.5501E-05 427.26637328939415 19.523 0.72968 18.198 18.002 18.731 -1.3251 26 20 2 0 0 0 0.76728 1 3045 3045 5.7604 0 1 444290 + 96 17821 67 67 104 104 0.08597812342566158 AARQVPVI 8 Unmodified _AARQVPVI_ 0 0 0 REV__nc|ENSG00000166049|Q8IV76-2|PASD1 REV__nc|ENSG00000166049|Q8IV76-2|PASD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 427.266345 852.518136 0.016343 6.9828E-06 -0.0075188 -3.2125E-06 0.008824 3.7702E-06 427.26626065727766 19.714 0.44939 18.317 18.066 18.516 -1.3966 0.07261 -8.2577E-05 NaN 5.7604 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 619840 + 97 17821 67 67 0.08597812342566158 AASPRLPPAP 10 Unmodified _AASPRLPPAP_ 0 0 0 REV__nc|ENSG00000102606|Q14155-6|ARHGEF7;REV__nc|ENSG00000129675|Q15052-2|ARHGEF6 REV__nc|ENSG00000129675|Q15052-2|ARHGEF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2734375 2 488.782359 975.550165 0.074095 3.6216E-05 -0.12012 -5.8713E-05 -0.046025 -2.2496E-05 488.7823808660264 42.374 4.7695 39.723 38.478 43.248 -2.651 296 135 4 0 0 0 0.744 1 7548 7548 6.7232 0 1 12714000 + 98 14844;15970 68 68 105 105 0.06141180025701942 AASTTPPER 9 Unmodified _AASTTPPER_ 0 0 0 REV__ENSG00000120289|ENST00000378982|MAGEB4 REV__ENSG00000120289|ENST00000378982|MAGEB4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2401123046875 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 59.786 1 56.472 55.972 56.972 -3.3139 0 0 0 0.18705 1 11124 11124 25.399 0.72543 1 + 99 15616 69 69 106 106 -0.005682800046201919 AASVEARYAAG 11 Unmodified _AASVEARYAAG_ 0 0 0 REV__ENST00000368654.7_1_10:129924009-129924492:-|nuORF REV__ENST00000368654.7_1_10:129924009-129924492:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2872314453125 2 533.269813 1064.52507 -0.082584 -4.4039E-05 0.10522 5.611E-05 0.022635 1.2071E-05 533.2698127370397 41.989 0.82595 39.27 38.763 39.589 -2.7191 51 23 4 0 0 0 0.67257 1 7891 7891 13.615 2.1202 1 8064100 + 100 20943 70 70 107 107 -0.004609195675584488 AATGLFITW 9 Unmodified _AATGLFITW_ 0 0 0 REV__tr|U7SPY1|U7SPY1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01660PE=3SV=1 REV__tr|U7SPY1|U7SPY1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01660PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2717590332031 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 145.84 1 140.72 140.22 141.22 -5.1108 0 0 0 0.20628 1 28193 28193 21.747 10.923 1 + 101 25008 71 71 108 108 0.02734972902840127 AATIALSLPPQ 11 Unmodified _AATIALSLPPQ_ 0 0 0 REV__EFNA4|p.D179Gfs*65|2|0.29|ENSG00000243364|chr1:155068911-155068912|-/G|frameshift_variant REV__EFNA4|p.D179Gfs*65|2|0.29|ENSG00000243364|chr1:155068911-155068912|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2763061523438 2 541.316232 1080.61791 NaN NaN NaN NaN NaN NaN NaN 148.93 1 143.87 143.37 144.37 -5.0595 0 0 0 0.18809 1 28855 28855 21.59 3.2171 1 + 102 13786 72 72 109 109 0.08082585165857381 AATKRPRSHR 10 Unmodified _AATKRPRSHR_ 0 0 0 REV__ENSG00000178404|ENST00000322630|CEP295NL REV__ENSG00000178404|ENST00000322630|CEP295NL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2603759765625 2 590.344512 1178.67447 NaN NaN NaN NaN NaN NaN NaN 159.04 1 153.77 153.27 154.27 -5.2712 0 0 0 0.22588 1 30860 30860 8.7454 1.1365 1 + 103 18605 73 73 110 110 0.09228070565745838 AATLAGPTLAA 11 Unmodified _AATLAGPTLAA_ 0 0 0 REV__ENSG00000166592|ENST00000299759|RRAD REV__ENSG00000166592|ENST00000299759|RRAD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7384033203125 2 478.7742 955.533846 -0.054589 -2.6136E-05 -0.35761 -0.00017122 -0.4122 -0.00019735 478.77387199197824 53.096 0.45104 50.001 49.724 50.175 -3.0954 14 12 2 0 0 0 0.60781 1 9786 9786 5.4027 0 1 324900 + 104 17860 74 74 111 111 0.054300540689382615 AATLPTEESE 10 Unmodified _AATLPTEESE_ 0 0 0 REV__ENSG00000182154|ENST00000371443|MRPL41 REV__ENSG00000182154|ENST00000371443|MRPL41 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6793823242188 2 524.245669 1046.47678 0.3488 0.00018286 3.2753 0.0017171 3.6241 0.0018999 524.2491927623387 144.06 0.17352 139.11 139.03 139.2 -4.9445 5 4 2 0 0 0 0.87854 1 27807 27807 13.906 11.017 1 2027300 + 105 18760 75 75 112 112 -0.044594579981094284 AATSVLVN 8 Unmodified _AATSVLVN_ 0 0 0 RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant;ENSG00000170881|ENST00000303545|RNF139 RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7215881347656 2 387.721436 773.428318 -0.092452 -3.5846E-05 0.44564 0.00017278 0.35319 0.00013694 387.7215178713328 33.216 0.73621 33.216 32.954 33.69 0 32 20 2 0 0 0 8448 1 6074 6074 11.999 0 1 1096100 106 6106 76 76 113 113 0.03254137943326896 AATVNEIVL 9 Unmodified _AATVNEIVL_ 0 0 0 ARHGEF18-MAPKAP1|2|fusion;ARHGEF18-MAPKAP1|1|fusion;MAPKAP1|p.S470L|1|0.24|ENSG00000119487|chr9:125444535-125444535|G/A|missense_variant;ENST00000497932.5_1_9:128201168-128209649:-|nuORF;nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1 ARHGEF18-MAPKAP1|2|fusion ARHGEF18-MAPKAP1|2|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2389221191406 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 95.173 1 95.173 94.673 95.673 0 0 0 0 0.23508 1 18643 18643 10.824 0.64053 1 107 211 77 77 114 114 0.055826516946467564 AAVGAKGG 8 Unmodified _AAVGAKGG_ 0 0 0 REV__ENST00000465878.6_2_16:57792547-57792799:-|nuORF REV__ENST00000465878.6_2_16:57792547-57792799:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.6498107910156 2 315.682114 629.349674 NaN NaN NaN NaN NaN NaN NaN 76.548 1 72.826 72.326 73.326 -3.7227 0 0 0 0.2396 1 14497 14497 0.0082765 0 1 + 108 21961 78 78 115 115 0.020173304289073712 AAVHLRIA 8 Unmodified _AAVHLRIA_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24310302734375 2 425.766512 849.518471 0.13811 5.8802E-05 0.2913 0.00012402 0.4294 0.00018283 425.7664524244063 63.466 0.597 60.05 59.757 60.354 -3.4158 39 16 3 0 0 0 0.8748 1 11904 11904 10.074 3.8681 1 3323800 + 109 14799 79 79 116 116 0.08769232062411447 AAVHLRIA 8 Unmodified _AAVHLRIA_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 425.766512 849.518471 -0.084511 -3.5982E-05 0.61298 0.00026099 0.52847 0.00022501 425.7665736490695 62.987 0.68069 60.002 59.617 60.298 -2.9851 -0.033996 0.00014481 NaN 10.074 47 19 3 NaN NaN NaN NaN 0 NaN NaN 0 5020000 + 110 14799 79 79 0.08769232062411447 AAVHLRIA 8 Unmodified _AAVHLRIA_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 425.766512 849.518471 -0.017049 -7.2587E-06 0.47408 0.00020185 0.45703 0.00019459 425.76654515183685 63.313 0.65485 60.056 59.709 60.364 -3.2567 0.020103 2.653E-05 NaN 10.074 47 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3539200 + 111 14799 79 79 0.08769232062411447 AAVHPIAA 8 Unmodified _AAVHPIAA_ 0 0 0 REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.218017578125 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 132.08 1 127.28 126.78 127.78 -4.799 0 0 0 0.23711 1 25428 25428 0.12286 0 1 + 112 25206 80 80 117 117 0.03889878871370911 AAVKHQVSL 9 Unmodified _AAVKHQVSL_ 0 0 0 ENST00000573177.1_1_18:3604156-3604288:+|nuORF ENST00000573177.1_1_18:3604156-3604288:+|nuORF ENST00000573177.1_1_18:3604156-3604288:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.1698303222656 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 117.41 1 112.8 112.3 113.3 -4.6106 0 0 0 0.23508 1 22531 22531 4.897 2.1618 1 113 11433 81 81 118 118 0.07245180025711306 AAVMPQNPE 9 Unmodified _AAVMPQNPE_ 0 0 0 ENST00000372398.5_1_9:132997974-132998061:+|nuORF ENST00000372398.5_1_9:132997974-132998061:+|nuORF ENST00000372398.5_1_9:132997974-132998061:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7289123535156 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 17.438 1 17.438 16.938 17.938 0 0 0 0 0.16777 1 2764 2764 2.6312 0 1 114 9178 82 82 119 119 -0.03618738250986553 AAVVVHTE 8 Unmodified _AAVVVHTE_ 0 0 0 REV__ENSG00000181786|ENST00000324436|ACTL9 REV__ENSG00000181786|ENST00000324436|ACTL9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 412.85693359375 2 413.226885 824.439217 0.028477 1.1767E-05 0.63893 0.00026402 0.6674 0.00027579 413.2271162215511 53.028 0.69839 49.941 49.586 50.284 -3.0876 34 19 3 0 0 0 0.87562 1 9813 9813 9.544 0 1 1353000 + 115 18738 83 83 120 120 0.019975403176090367 AAVVVHTE 8 Unmodified _AAVVVHTE_ 0 0 0 REV__ENSG00000181786|ENST00000324436|ACTL9 REV__ENSG00000181786|ENST00000324436|ACTL9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 413.226885 824.439217 -0.37249 -0.00015392 0.92844 0.00038366 0.55595 0.00022973 413.22723943733325 52.775 0.72574 49.891 49.522 50.247 -2.8837 -0.024568 0.00010729 NaN 9.544 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1480400 + 116 18738 83 83 0.019975403176090367 AAWVSPAID 9 Unmodified _AAWVSPAID_ 0 0 0 REV__ENST00000293217.9_3_17:73975210-73975420:-|nuORF REV__ENST00000293217.9_3_17:73975210-73975420:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2410583496094 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 41.819 1 39.213 38.713 39.713 -2.606 0 0 0 0.19652 1 7510 7510 0.073264 0 1 + 117 20360 84 84 121 121 -0.0016619051090174253 ACDGDTDC 8 Unmodified _ACDGDTDC_ 0 0 0 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant;SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 400.1154479980469 2 400.115286 798.216019 NaN NaN NaN NaN NaN NaN NaN 166.59 1 166.59 166.09 167.09 0 0 0 0 0.21486 1 33953 33953 0.79363 0.10326 1 118 4098 85 85 122 122 -0.19116064521278986 ACDGDTDC 8 Unmodified _ACDGDTDC_ 0 0 0 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant;SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.1157531738281 2 400.115286 798.216019 NaN NaN NaN NaN NaN NaN NaN 169.49 1 164.7 164.2 165.2 -4.7898 0 0 0 0.21486 1 34335 34335 0.79363 0.10326 1 119 4098 85 85 123 123 -0.19116064521278986 ACDGDTDC 8 Unmodified _ACDGDTDC_ 0 0 0 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant;SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 400.1087341308594 2 400.115286 798.216019 NaN NaN NaN NaN NaN NaN NaN 169.25 1 164.32 163.82 164.82 -4.9295 0 0 0 0.21486 1 33408 33408 0.79363 0.10326 1 120 4098 85 85 124 124 -0.19116064521278986 ACDGDTDC 8 Unmodified _ACDGDTDC_ 0 0 0 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant;SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 400.1151123046875 2 400.115286 798.216019 NaN NaN NaN NaN NaN NaN NaN 169.86 1 164.93 164.43 165.43 -4.9295 0 0 0 0.21486 1 33560 33560 0.79363 0.10326 1 121 4098 85 85 125 125 -0.19116064521278986 ACDGDTDC 8 Unmodified _ACDGDTDC_ 0 0 0 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant;SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 400.1150817871094 2 400.115286 798.216019 NaN NaN NaN NaN NaN NaN NaN 169.86 1 164.98 164.48 165.48 -4.873 0 0 0 0.21486 1 33579 33579 0.79363 0.10326 1 122 4098 85 85 126 126 -0.19116064521278986 ACDGDTDC 8 Unmodified _ACDGDTDC_ 0 0 0 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant;SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 400.1168212890625 2 400.115286 798.216019 NaN NaN NaN NaN NaN NaN NaN 170.52 1 165.64 165.14 166.14 -4.873 0 0 0 0.21486 1 33747 33747 0.79363 0.10326 1 123 4098 85 85 127 127 -0.19116064521278986 ACFCCGGP 8 Unmodified _ACFCCGGP_ 0 0 0 ENST00000435880.6_1_2:70190354-70215932:-|nuORF ENST00000435880.6_1_2:70190354-70215932:-|nuORF ENST00000435880.6_1_2:70190354-70215932:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 379.1254577636719 2 379.126945 756.239337 NaN NaN NaN NaN NaN NaN NaN 6.8383 1 5.7937 5.2937 6.2937 -1.0446 0 0 0 0.21486 1 523 523 0.79363 0.79363 1 124 9832 86 86 128 128 -0.1485329721765538 ACHLHVEDY 9 Unmodified _ACHLHVEDY_ 0 0 0 REV__ENSG00000109927|ENST00000392793|TECTA REV__ENSG00000109927|ENST00000392793|TECTA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77392578125 2 543.737291 1085.46003 NaN NaN NaN NaN NaN NaN NaN 105.07 1 100.99 100.49 101.49 -4.078 0 0 0 0.23508 1 20210 20210 8.5933 0 1 + 125 15181 87 87 129 129 -0.07928237365035784 ACLALFKY 8 Unmodified _ACLALFKY_ 0 0 0 REV__ENSG00000168754|ENST00000490605|FAM178B REV__ENSG00000168754|ENST00000490605|FAM178B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 91.804 1 91.804 91.304 92.304 0 0 0 0 0.21486 1 17946 17946 1.8442 0 1 + 126 18049 88 88 130 130 0.022165320020462786 ACLYTVMPAP 10 Unmodified _ACLYTVMPAP_ 0 0 0 REV__ENSG00000174885|ENST00000534750|NLRP6 REV__ENSG00000174885|ENST00000534750|NLRP6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2819213867188 2 533.259013 1064.50347 NaN NaN NaN NaN NaN NaN NaN 111.11 1 106.61 106.11 107.11 -4.4915 0 0 0 2.8426 1 21324 21324 0.84494 0.43668 1 + 127 18436 89 89 131 131 -0.02619763912093731 ACPAGGHG 8 Unmodified _ACPAGGHG_ 0 0 0 REV__ENST00000280571.9_1_12:123920839-123921196:-|nuORF REV__ENST00000280571.9_1_12:123920839-123921196:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 335.2219543457031 2 335.142298 668.270044 NaN NaN NaN NaN NaN NaN NaN 58.536 1 55.285 54.785 55.785 -3.2517 0 0 0 0.2396 1 10881 10881 0.30703 0.30703 1 + 128 20305 90 90 132 132 -0.07736059516741989 ACPFDQTAIN 10 Unmodified _ACPFDQTAIN_ 0 0 0 nc|ENSG00000056586|Q9HBD1-2|RC3H2;nc|ENSG00000056586|Q9HBD1-3|RC3H2;RC3H2|p.F582Mfs*6|1|0.08|ENSG00000056586|chr9:122860022-122860023|-/AAAAGAAACAT|frameshift_variant;nc|ENSG00000056586|Q9HBD1-4|RC3H2;RC3H2|p.T1132Qfs*5|1|0.29|ENSG00000056586|chr9:122849809-122849809|T/-|frameshift_variant;ENSG00000056586|ENST00000357244|RC3H2;nc|ENSG00000056586|Q9HBD1-5|RC3H2 nc|ENSG00000056586|Q9HBD1-2|RC3H2 nc|ENSG00000056586|Q9HBD1-2|RC3H2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2771606445312 2 540.244949 1078.47534 0.37102 0.00020044 -0.009751 -5.268E-06 0.36127 0.00019517 540.2449236846351 100.26 0.78312 95.962 95.579 96.362 -4.297 55 22 3 0 0 0 0.42762 1 19143 19143 10.151 8.9357 1 4552500 129 1280 91 91 133 133 -0.060753705678507686 ACPPKFGSYAY 11 Unmodified _ACPPKFGSYAY_ 0 0 0 GABRA6|p.L172P|1|0.32|ENSG00000145863|chr5:161689322-161689322|T/C|missense_variant GABRA6|p.L172P|1|0.32|ENSG00000145863|chr5:161689322-161689322|T/C|missense_variant GABRA6|p.L172P|1|0.32|ENSG00000145863|chr5:161689322-161689322|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2803344726562 2 602.278792 1202.54303 NaN NaN NaN NaN NaN NaN NaN 90.788 1 86.928 86.428 87.428 -3.8595 0 0 0 0.14401 1 17765 17765 29.082 0.59474 1 130 11833 92 92 134 134 -0.05013920637020419 ACSNYRWECE 10 Unmodified _ACSNYRWECE_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7611694335938 2 630.742247 1259.46994 NaN NaN NaN NaN NaN NaN NaN 129.12 1 124.38 123.88 124.88 -4.7408 0 0 0 2.8426 1 24847 24847 0.26539 0 1 + 131 15218 93 93 135 135 -0.14941417421982806 ADANEILQ 8 Unmodified _ADANEILQ_ 0 0 0 REV__ENSG00000101162|ENST00000217133|TUBB1 REV__ENSG00000101162|ENST00000217133|TUBB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21954345703125 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 49.115 1 46.233 45.733 46.733 -2.8811 0 0 0 0.23584 1 9301 9301 0.25148 0 1 + 132 14765 94 94 136 136 -0.01735371270228825 ADANKQLY 8 Unmodified _ADANKQLY_ 0 0 0 REV__HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant REV__HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.540283203125 2 461.735074 921.455596 -0.10432 -4.8168E-05 0.26138 0.00012069 0.15707 7.2523E-05 461.7351733668923 46.207 1.248 43.366 42.861 44.109 -2.8409 91 35 5 0 0 0 0.97174 1 8635 8635 19.257 1.1106 1 137020000 + 133 14582 95 95 137 137 -0.008273785162828062 ADAPPPPSAP 10 Unmodified _ADAPPPPSAP_ 0 0 0 SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant;ENSG00000143368|ENST00000271628|SF3B4 SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2308044433594 2 460.229625 918.444697 -0.097461 -4.4854E-05 2.6033 0.0011981 2.5059 0.0011533 460.2311947013164 41.509 0.55413 38.858 38.549 39.103 -2.651 24 15 2 0 0 0 0.67319 1 7501 7501 13.906 2.2658 1 762440 134 4477 96 96 138 138 -0.017787808905723068 ADAPRTSR 8 Unmodified _ADAPRTSR_ 0 0 0 CD247|p.A63Rfs*15|1|0.42|ENSG00000198821|chr1:167439377-167439377|G/-|frameshift_variant CD247|p.A63Rfs*15|1|0.42|ENSG00000198821|chr1:167439377-167439377|G/-|frameshift_variant CD247|p.A63Rfs*15|1|0.42|ENSG00000198821|chr1:167439377-167439377|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.230712890625 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 37.924 1 35.455 34.955 35.955 -2.4688 0 0 0 0.22674 1 7015 7015 14.838 11.251 1 135 444 97 97 139 139 0.005102729180521237 ADAQFVFMH 9 Unmodified _ADAQFVFMH_ 0 0 0 REV__ENSG00000105011|ENST00000263382|ASF1B REV__ENSG00000105011|ENST00000263382|ASF1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.279052734375 2 533.244752 1064.47495 NaN NaN NaN NaN NaN NaN NaN 58.729 1 55.818 55.318 56.318 -2.9105 0 0 0 0.19646 1 11281 11281 1.2148 0.80657 1 + 136 14959 98 98 140 140 -0.0547074549701847 ADCGSGHC 8 Unmodified _ADCGSGHC_ 0 0 0 ENSG00000244486|ENST00000622235|SCARF2;nc|ENSG00000244486|Q96GP6|SCARF2 ENSG00000244486|ENST00000622235|SCARF2 ENSG00000244486|ENST00000622235|SCARF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2161560058594 2 375.120706 748.226858 NaN NaN NaN NaN NaN NaN NaN 98.683 1 94.414 93.914 94.914 -4.2692 0 0 0 0.2396 1 18866 18866 0.12286 0.073072 1 137 7882 99 99 141 141 -0.15732617356343326 ADDQEEEME 9 Unmodified _ADDQEEEME_ 0 0 0 KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;ENSG00000183354|ENST00000399933|KIAA2026;KIAA2026|p.G107Afs*57|1|0.16|ENSG00000183354|chr9:6007468-6007468|C/-|frameshift_variant;KIAA2026|p.M334Tfs*13|1|0.05|ENSG00000183354|chr9:5969230-5969231|-/GAAAG|frameshift_variant;KIAA2026|p.N542Ifs*11|1|0.34|ENSG00000183354|chr9:5968606-5968606|T/-|frameshift_variant;KIAA2026|p.K690Rfs*3|1|0.14|ENSG00000183354|chr9:5968162-5968162|T/-|frameshift_variant KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7886962890625 2 548.192776 1094.371 0.32055 0.00017572 -2.5841 -0.0014166 -2.2635 -0.0012409 548.1889582880838 138.37 0.17221 133.53 133.41 133.58 -4.84 8 4 3 0 0 0 0.87741 1 26648 26648 3.2813 0 1 2008400 138 6843 100 100 142 142 -0.17241161905849367 ADEESPSS 8 Unmodified _ADEESPSS_ 0 0 0 REV__nc|ENSG00000198589|P50851-2|LRBA REV__nc|ENSG00000198589|P50851-2|LRBA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.1142272949219 2 411.161605 820.308657 NaN NaN NaN NaN NaN NaN NaN 125.83 1 125.83 125.33 126.33 0 0 0 0 0.21486 1 24826 24826 2.3027 1.5091 1 + 139 19425 101 101 143 143 -0.10868520191877451 ADEVVLWHL 9 Unmodified _ADEVVLWHL_ 0 0 0 REV__nc|ENSG00000109956|Q9P2W7-2|B3GAT1 REV__nc|ENSG00000109956|Q9P2W7-2|B3GAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2683715820312 2 541.287474 1080.5604 0.072506 3.9247E-05 0.017597 9.5249E-06 0.090103 4.8772E-05 541.2873856995545 106.65 0.93472 102.27 101.86 102.79 -4.3764 60 26 3 0 0 0 0.15889 1 20512 20512 22.736 5.6234 1 4506000 + 140 15183 102 102 144 144 0.023337429602861448 ADEVVLWHL 9 Unmodified _ADEVVLWHL_ 0 0 0 REV__nc|ENSG00000109956|Q9P2W7-2|B3GAT1 REV__nc|ENSG00000109956|Q9P2W7-2|B3GAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2772216796875 2 541.287474 1080.5604 0.80783 0.00043727 -0.65651 -0.00035536 0.15133 8.1911E-05 541.2869710654467 106.36 1.1339 102.27 101.85 102.99 -4.0913 72 32 3 0 0 0 0.15889 1 20543 20543 22.736 5.6234 1 4978800 + 141 15183 102 102 145 145 0.023337429602861448 ADGDCLPQP 9 Unmodified _ADGDCLPQP_ 0 0 0 ENST00000395473.6_2_17:25976035-25976554:+|nuORF ENST00000395473.6_2_17:25976035-25976554:+|nuORF ENST00000395473.6_2_17:25976035-25976554:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23077392578125 2 458.197467 914.380382 0.26365 0.0001208 0.93374 0.00042784 1.1974 0.00054864 458.1977507438846 33.399 0.62885 33.399 33.025 33.654 0 19 17 2 0 0 0 0.79204 1 6050 6050 7.2892 2.0586 1 782640 142 9429 103 103 146 146 -0.08023304039022605 ADGEDDETAY 10 Unmodified _ADGEDDETAY_ 0 0 0 REV__ENSG00000178199|ENST00000409806|ZC3H12D REV__ENSG00000178199|ENST00000409806|ZC3H12D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7828979492188 2 543.198916 1084.38328 0.2739 0.00014878 0.65384 0.00035517 0.92774 0.00050395 543.1987727952554 141.46 0.17491 136.81 136.71 136.89 -4.6493 6 4 2 0 0 0 0.90091 1 27927 27927 6.2058 0 1 1303700 + 143 18593 104 104 147 147 -0.1555380217118909 ADGEGNNDTD 10 Unmodified _ADGEGNNDTD_ 0 0 0 REV__ENSG00000186340|ENST00000617924|THBS2 REV__ENSG00000186340|ENST00000617924|THBS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 504.7476806640625 2 504.181057 1006.34756 -0.065109 -3.2827E-05 -0.8928 -0.00045013 -0.9579 -0.00048296 504.18045275566135 41.281 1.1251 38.792 38.532 39.657 -2.4896 51 31 2 0 0 0 0.91149 1 7384 7384 1.4819 1.4819 1 803820 + 144 19028 105 105 148 148 -0.15535839628171288 ADGEGNNDTD 10 Unmodified _ADGEGNNDTD_ 0 0 0 REV__ENSG00000186340|ENST00000617924|THBS2 REV__ENSG00000186340|ENST00000617924|THBS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 504.181057 1006.34756 -0.22409 -0.00011298 -0.76697 -0.00038669 -0.99105 -0.00049967 504.18067486087267 41.329 1.3099 38.694 38.363 39.673 -2.6348 -0.081595 4.0419E-05 NaN 1.4819 52 37 2 NaN NaN NaN NaN 0 NaN NaN 0 1721100 + 145 19028 105 105 -0.15535839628171288 ADGEGNNDTD 10 Unmodified _ADGEGNNDTD_ 0 0 0 REV__ENSG00000186340|ENST00000617924|THBS2 REV__ENSG00000186340|ENST00000617924|THBS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 504.181057 1006.34756 -0.31749 -0.00016007 -0.76214 -0.00038426 -1.0796 -0.00054433 504.1806023233667 41.492 1.2644 38.841 38.377 39.641 -2.651 0.065241 4.5283E-05 NaN 1.4819 60 35 2 NaN NaN NaN NaN 0 NaN NaN 0 1014400 + 146 19028 105 105 -0.15535839628171288 ADGLITHTS 9 Unmodified _ADGLITHTS_ 0 0 0 ENST00000484164.6_1_6:139233880-139237022:-|nuORF;nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1 ENST00000484164.6_1_6:139233880-139237022:-|nuORF ENST00000484164.6_1_6:139233880-139237022:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2268981933594 2 457.732532 913.45051 0.28548 0.00013067 0.088276 4.0407E-05 0.37376 0.00017108 457.73257731483307 31.842 0.48065 31.842 31.566 32.047 0 20 13 2 0 0 0 0.19311 1 5757 5757 37.974 13.3 1 900640 147 3937 106 106 149 149 -0.009676823788936417 ADGLITHTS 9 Unmodified _ADGLITHTS_ 0 0 0 ENST00000484164.6_1_6:139233880-139237022:-|nuORF;nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1 ENST00000484164.6_1_6:139233880-139237022:-|nuORF ENST00000484164.6_1_6:139233880-139237022:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2251281738281 2 457.732532 913.45051 -0.15674 -7.1745E-05 0.13801 6.3173E-05 -0.018726 -8.5715E-06 457.7326849825573 33.784 0.4782 31.467 31.288 31.767 -2.3175 24 13 2 0 0 0 0.026664 4 6193 6171;6177;6193;6221 85.272 48.766 1 1112500 148 3937 106 106 150;151;152;153 152 -0.009676823788936417 ADGLITHTS 9 Unmodified _ADGLITHTS_ 0 0 0 ENST00000484164.6_1_6:139233880-139237022:-|nuORF;nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1 ENST00000484164.6_1_6:139233880-139237022:-|nuORF ENST00000484164.6_1_6:139233880-139237022:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2352294921875 2 457.732532 913.45051 0.16106 7.3723E-05 -0.082805 -3.7903E-05 0.078256 3.582E-05 457.73251491224994 33.784 0.61887 31.637 31.222 31.841 -2.1468 25 17 2 0 0 0 0.01604 3 5889 5874;5889;5931 96.285 44.655 1 973360 149 3937 106 106 154;155;156 155 -0.009676823788936417 ADGLITHTS 9 Unmodified _ADGLITHTS_ 0 0 0 ENST00000484164.6_1_6:139233880-139237022:-|nuORF;nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1 ENST00000484164.6_1_6:139233880-139237022:-|nuORF ENST00000484164.6_1_6:139233880-139237022:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23291015625 2 457.732532 913.45051 0.38038 0.00017411 -0.58037 -0.00026566 -0.19999 -9.1542E-05 457.732365262167 33.86 0.49082 31.644 31.389 31.879 -2.2158 19 13 2 0 0 0 0.11032 1 5909 5909 52.268 23.187 1 795070 150 3937 106 106 157 157 -0.009676823788936417 ADGLRAYAA 9 Unmodified _ADGLRAYAA_ 0 0 0 P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant;ENSG00000110811|ENST00000290510|P3H3;P3H3|p.G278Afs*42|2|0.26|ENSG00000110811|chr12:6830529-6830529|G/-|frameshift_variant P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7478942871094 2 454.235242 906.45593 -0.20055 -9.1098E-05 -0.58621 -0.00026628 -0.78676 -0.00035737 454.23482339235125 48.792 0.73522 45.923 45.657 46.392 -2.869 43 20 3 0 0 0 0.11519 1 9232 9232 61.602 27.2 1 3927200 151 12745 107 107 158 158 -0.0010395879644420347 ADGLRAYAA 9 Unmodified _ADGLRAYAA_ 0 0 0 P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant;ENSG00000110811|ENST00000290510|P3H3;P3H3|p.G278Afs*42|2|0.26|ENSG00000110811|chr12:6830529-6830529|G/-|frameshift_variant P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7514343261719 2 454.235242 906.45593 -0.028995 -1.3171E-05 -0.57616 -0.00026171 -0.60515 -0.00027488 454.2348453506263 48.925 0.72807 45.926 45.65 46.378 -2.999 42 20 3 0 0 0 0.26627 1 8930 8930 38.615 11.731 1 4005300 152 12745 107 107 159 159 -0.0010395879644420347 ADGLRAYAA 9 Unmodified _ADGLRAYAA_ 0 0 0 P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant;ENSG00000110811|ENST00000290510|P3H3;P3H3|p.G278Afs*42|2|0.26|ENSG00000110811|chr12:6830529-6830529|G/-|frameshift_variant P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.751708984375 2 454.235242 906.45593 -0.11532 -5.2381E-05 -0.4484 -0.00020368 -0.56371 -0.00025606 454.23495235115894 48.94 0.75783 45.934 45.658 46.416 -3.0068 40 21 3 0 0 0 0.25296 1 8971 8971 42.232 35.841 1 2866700 153 12745 107 107 160 160 -0.0010395879644420347 ADGPWQRQ 8 Unmodified _ADGPWQRQ_ 0 0 0 REV__nc|ENSG00000163157|Q9NZQ9-2|TMOD4 REV__nc|ENSG00000163157|Q9NZQ9-2|TMOD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7256164550781 2 479.230491 956.446428 0.16274 7.7991E-05 -3.0246 -0.0014495 -2.8619 -0.0013715 479.2291843785373 63.156 0.18641 59.74 59.644 59.831 -3.4158 6 4 2 0 0 0 0.87247 1 11811 11811 0.12286 0 1 318930 + 154 17553 108 108 161 161 -0.03353727081946545 ADGTNEWK 8 Unmodified _ADGTNEWK_ 0 0 0 REV__ENSG00000169217|ENST00000305596|CD2BP2 REV__ENSG00000169217|ENST00000305596|CD2BP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.7635192871094 2 460.709057 919.40356 NaN NaN NaN NaN NaN NaN NaN 107.12 1 102.99 102.49 103.49 -4.135 0 0 0 0.23182 1 20601 20601 0.62683 0 1 + 155 18085 109 109 162 162 -0.05936541930043404 ADHAKKCR 8 Unmodified _ADHAKKCR_ 0 0 0 ENST00000503362.1_1_4:177241184-177243347:+|nuORF ENST00000503362.1_1_4:177241184-177243347:+|nuORF ENST00000503362.1_1_4:177241184-177243347:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16485595703125 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 127.85 0.99999 123.05 122.55 123.55 -4.7958 0 0 0 0.21486 1 24540 24540 0.45834 0 1 156 10644 110 110 163 163 0.004232097999192774 ADHLKERS 8 Unmodified _ADHLKERS_ 0 0 0 ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant;ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant;ENSG00000196693|ENST00000359467|ZNF33B;nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72113037109375 2 478.251423 954.488293 -0.021414 -1.0241E-05 -0.17373 -8.3088E-05 -0.19515 -9.3329E-05 478.2511368981836 18.583 0.2092 17.272 17.177 17.386 -1.3109 9 5 2 0 0 0 1.0115 1 3042 3042 10.824 1.4765 1 342810 157 26614 111 111 164 164 0.009228286065649627 ADHPKRRFGIP 11 Unmodified _ADHPKRRFGIP_ 0 0 0 OSTN|p.V109A|1|0.07|ENSG00000188729|chr3:191250045-191250045|T/C|missense_variant OSTN|p.V109A|1|0.07|ENSG00000188729|chr3:191250045-191250045|T/C|missense_variant OSTN|p.V109A|1|0.07|ENSG00000188729|chr3:191250045-191250045|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 647.80078125 2 647.36237 1292.71019 1.0969 0.00071006 0.49378 0.00031965 1.5906 0.0010297 647.8647955940246 162.65 0.10359 157.86 157.79 157.89 -4.7898 4 2 2 0 0 0 0.60781 1 32360 32360 5.4027 0 1 7201200 158 12742 112 112 165 165 0.07554108022736727 ADILSELAS 9 Unmodified _ADILSELAS_ 0 0 0 AHDC1|p.K985Sfs*157|1|0.06|ENSG00000126705|chr1:27549162-27549162|T/-|frameshift_variant;AHDC1|p.F1046Sfs*96|1|0.2|ENSG00000126705|chr1:27548981-27548981|G/-|frameshift_variant;AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant;ENSG00000126705|ENST00000673934|AHDC1 AHDC1|p.K985Sfs*157|1|0.06|ENSG00000126705|chr1:27549162-27549162|T/-|frameshift_variant AHDC1|p.K985Sfs*157|1|0.06|ENSG00000126705|chr1:27549162-27549162|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2444152832031 2 459.742565 917.470577 0.12095 5.5607E-05 0.53544 0.00024617 0.6564 0.00030177 459.7427337762283 122.51 0.73978 117.96 117.71 118.45 -4.5476 34 20 2 0 0 0 0.09143 1 24164 24164 58.679 1.2075 1 2193500 159 102 113 113 166 166 0.008540685610455512 ADKFRCTPK 9 Unmodified _ADKFRCTPK_ 0 0 0 REV__ENSG00000184735|ENST00000327968|DDX53 REV__ENSG00000184735|ENST00000327968|DDX53 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27734375 2 533.279126 1064.5437 NaN NaN NaN NaN NaN NaN NaN 111.5 1 107.08 106.58 107.58 -4.4231 0 0 0 0.16777 1 21971 21971 22.736 5.6234 1 + 160 18913 114 114 167 167 0.01400918802664819 ADKTKTKK 8 Unmodified _ADKTKTKK_ 0 0 0 tr|U7T5J7|U7T5J7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00082PE=4SV=1 tr|U7T5J7|U7T5J7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00082PE=4SV=1 tr|U7T5J7|U7T5J7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00082PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 307.1907958984375 3 307.190553 918.549831 NaN NaN NaN NaN NaN NaN NaN 80.299 1 76.46 75.96 76.96 -3.8392 0 0 0 0.21486 1 15238 15238 0.45834 0.2225 1 161 26467 115 115 168 168 0.08729760305857326 ADLKNSCEY 9 Unmodified _ADLKNSCEY_ 0 0 0 ENSG00000132205|ENST00000254528|EMILIN2 ENSG00000132205|ENST00000254528|EMILIN2 ENSG00000132205|ENST00000254528|EMILIN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2774658203125 2 521.729132 1041.44371 -0.046663 -2.4346E-05 2.6492 0.0013822 2.6025 0.0013578 522.2317113802338 160.98 0.28322 156.18 156 156.28 -4.7952 5 3 2 0 0 0 0.56623 1 32029 32029 34.402 3.7652 1 1634200 162 3710 116 116 169 169 -0.07535363321767363 ADMGGSLV 8 Unmodified _ADMGGSLV_ 0 0 0 REV__nc|ENSG00000175575|Q9BRP4-3|PAAF1 REV__nc|ENSG00000175575|Q9BRP4-3|PAAF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2218322753906 2 375.178546 748.34254 NaN NaN NaN NaN NaN NaN NaN 110.67 1 106.18 105.68 106.68 -4.4915 0 0 0 0.21486 1 21244 21244 9.3474 0 1 + 163 18482 117 117 170 170 -0.04169770233829695 ADNADLIAA 9 Unmodified _ADNADLIAA_ 0 0 0 REV__nc|ENSG00000167881|Q9UHB9-4|SRP68 REV__nc|ENSG00000167881|Q9UHB9-4|SRP68 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2189636230469 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 42.257 1 39.538 39.038 40.038 -2.7191 0 0 0 0.19512 1 7901 7901 12.241 0 1 + 164 17977 118 118 171 171 -0.017353712702515622 ADNYEDDHFKS 11 Unmodified _ADNYEDDHFKS_ 0 0 0 nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1 nc|ENSG00000082805|Q8IUD2-5|ERC1 nc|ENSG00000082805|Q8IUD2-5|ERC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 448.51190185546875 3 447.517834 1339.53167 0.21962 9.8286E-05 -1.35 -0.00060415 -1.1304 -0.00050586 447.5175180987967 133.07 0.90703 133.07 132.76 133.66 0 117 25 6 0 0 0 0.54604 1 26330 26330 8.4443 7.0369 1 34146000 165 1644 119 119 172 172 -0.12451071197483543 ADPACGPRE 9 Unmodified _ADPACGPRE_ 0 0 0 nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000157193|ENST00000306052|LRP8 nc|ENSG00000157193|Q14114-3|LRP8 nc|ENSG00000157193|Q14114-3|LRP8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2389831542969 2 458.203084 914.391615 NaN NaN NaN NaN NaN NaN NaN 66.149 1 62.653 62.153 63.153 -3.4965 0 0 0 0.21844 1 12391 12391 18.146 2.2992 1 166 5121 120 120 173 173 -0.06900481944876447 ADPRLCLQ 8 Unmodified _ADPRLCLQ_ 0 0 0 nc|ENSG00000146839|Q9Y493-7|ZAN nc|ENSG00000146839|Q9Y493-7|ZAN nc|ENSG00000146839|Q9Y493-7|ZAN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23858642578125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 51.648 1 48.766 48.266 49.266 -2.8824 0 0 0 0.20761 1 9815 9815 19.257 1.122 1 167 12371 121 121 174 174 0.003732718485366604 ADRCPPPP 8 Unmodified _ADRCPPPP_ 0 0 0 ENSG00000103175|ENST00000219454|WFDC1 ENSG00000103175|ENST00000219454|WFDC1 ENSG00000103175|ENST00000219454|WFDC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.1576232910156 2 426.705263 851.395972 -0.29937 -0.00012774 0.3816 0.00016283 0.082231 3.5088E-05 426.70533380200624 50.9 0.67096 48.017 47.643 48.314 -2.8824 43 18 3 0 0 0 0.99494 1 9624 9624 13.508 1.8676 1 3108900 168 2170 122 122 175 175 -0.035669727313234034 ADRCPPPP 8 Unmodified _ADRCPPPP_ 0 0 0 ENSG00000103175|ENST00000219454|WFDC1 ENSG00000103175|ENST00000219454|WFDC1 ENSG00000103175|ENST00000219454|WFDC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 426.705263 851.395972 0.43489 0.00018557 -0.36901 -0.00015746 0.065876 2.811E-05 426.705085363029 48.003 0.98531 48.003 47.362 48.347 0 0.083375 -0.00041585 NaN 13.508 55 27 3 NaN NaN NaN NaN 0 NaN NaN 0 3263800 169 2170 122 122 -0.035669727313234034 ADRCPPPP 8 Unmodified _ADRCPPPP_ 0 0 0 ENSG00000103175|ENST00000219454|WFDC1 ENSG00000103175|ENST00000219454|WFDC1 ENSG00000103175|ENST00000219454|WFDC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 426.705263 851.395972 0.0085678 3.6559E-06 0.10862 4.6351E-05 0.11719 5.0007E-05 426.7052887715908 50.936 0.66034 47.891 47.53 48.19 -3.0453 -0.028402 -8.2337E-06 NaN 13.508 34 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3474000 170 2170 122 122 -0.035669727313234034 ADRCPPPP 8 Unmodified _ADRCPPPP_ 0 0 0 ENSG00000103175|ENST00000219454|WFDC1 ENSG00000103175|ENST00000219454|WFDC1 ENSG00000103175|ENST00000219454|WFDC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 426.705263 851.395972 -0.3255 -0.00013889 0.49007 0.00020912 0.16458 7.0226E-05 426.70545478487577 50.818 1.203 47.766 46.93 48.133 -3.0517 -0.15299 0.0003173 NaN 13.508 51 34 2 NaN NaN NaN NaN 0 NaN NaN 0 3073500 171 2170 122 122 -0.035669727313234034 ADRPELEV 8 Unmodified _ADRPELEV_ 0 0 0 ENST00000597275.5_1_X:48911128-48919505:+|nuORF ENST00000597275.5_1_X:48911128-48919505:+|nuORF ENST00000597275.5_1_X:48911128-48919505:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24261474609375 2 464.740357 927.46616 0.17987 8.3595E-05 1.2279 0.00057064 1.4077 0.00065423 464.7410953798953 24.495 0.4476 24.495 24.267 24.715 0 17 12 2 0 0 0 8448 1 4223 4223 10.074 1.9184 1 936000 172 11673 123 123 176 176 -0.0004739586186133238 ADTATASADP 10 Unmodified _ADTATASADP_ 0 0 0 REV__ENSG00000176771|ENST00000409261|NCKAP5 REV__ENSG00000176771|ENST00000409261|NCKAP5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2412109375 2 460.203804 918.393055 NaN NaN NaN NaN NaN NaN NaN 110.56 1 106.34 105.84 106.84 -4.2289 0 0 0 2.8426 1 21280 21280 1.9275 0 1 + 173 18521 124 124 177 177 -0.06940569375137784 ADTEMPGLS 9 Unmodified _ADTEMPGLS_ 0 0 0 ENST00000575672.1_1_16:4307734-4307863:-|nuORF ENST00000575672.1_1_16:4307734-4307863:-|nuORF ENST00000575672.1_1_16:4307734-4307863:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.233642578125 2 460.705125 919.395698 0.11759 5.4174E-05 0.96727 0.00044563 1.0849 0.0004998 460.7054823694006 97.648 0.79221 93.413 93.055 93.847 -4.2348 33 22 3 0 0 0 0.54076 1 18681 18681 26.884 0 1 2191500 174 11456 125 125 178 178 -0.06722437241819534 ADTEPLERY 9 Unmodified _ADTEPLERY_ 0 0 0 REV__ENSG00000056050|ENST00000393381|HPF1 REV__ENSG00000056050|ENST00000393381|HPF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7788696289062 2 547.261653 1092.50875 0.28357 0.00015519 0.13463 7.3678E-05 0.4182 0.00022887 547.2616466053626 126.58 0.97826 121.78 121.32 122.3 -4.7958 54 27 3 0 0 0 0.44262 1 24341 24341 23.148 1.4018 1 6718200 + 175 14121 126 126 179 179 -0.03380045524272646 ADTFSCHCY 9 Unmodified _ADTFSCHCY_ 0 0 0 ENSG00000106302|ENST00000223026|HYAL4 ENSG00000106302|ENST00000223026|HYAL4 ENSG00000106302|ENST00000223026|HYAL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6827392578125 2 523.688952 1045.36335 NaN NaN NaN NaN NaN NaN NaN 155.74 1 155.74 155.24 156.24 0 0 0 0 0.23508 1 31225 31225 3.9444 0 1 176 2374 127 127 180 180 -0.15751547916465825 ADTILCLGSS 10 Unmodified _ADTILCLGSS_ 0 0 0 ENST00000574992.5_1_17:79871648-79872373:-|nuORF;ENST00000576156.1_1_17:79871830-79872373:-|nuORF;ENST00000572976.5_1_17:79870294-79872532:-|nuORF;nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENSG00000187531|ENST00000328666|SIRT7 ENST00000574992.5_1_17:79871648-79872373:-|nuORF ENST00000574992.5_1_17:79871648-79872373:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25848388671875 2 490.241875 978.469197 NaN NaN NaN NaN NaN NaN NaN 40.182 1 37.547 37.047 38.047 -2.6348 0 0 0 0.22576 1 7480 7480 14.838 0.93222 1 177 7111 128 128 181 181 -0.020898887993553217 ADTLLKLGV 9 Unmodified _ADTLLKLGV_ 0 0 0 REV__ENST00000602845.1_1_3:196670054-196670300:+|nuORF REV__ENST00000602845.1_1_3:196670054-196670300:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2487487792969 2 465.286943 928.559333 0.20208 9.4024E-05 -0.35674 -0.00016599 -0.15467 -7.1964E-05 465.28669404139066 97.644 0.33784 97.644 97.507 97.844 0 11 9 2 0 0 0 0.44856 1 19130 19130 1.2148 0.25256 1 704140 + 178 23432 129 129 182 182 0.09219528591370363 ADVDLSRCWD 10 Unmodified _ADVDLSRCWD_ 0 0 0 REV__nc|ENSG00000204851|Q9ULN7-1|PNMA8B REV__nc|ENSG00000204851|Q9ULN7-1|PNMA8B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.25927734375 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 17.094 1 15.878 15.378 16.378 -1.2159 0 0 0 0.22588 1 2722 2722 1.6526 0 1 + 179 19568 130 130 183 183 -0.07948887027441742 ADVSDLRAD 9 Unmodified _ADVSDLRAD_ 0 0 0 ENSG00000163424|ENST00000295622|TEX55 ENSG00000163424|ENST00000295622|TEX55 ENSG00000163424|ENST00000295622|TEX55 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2402648925781 2 481.232896 960.451239 -0.015525 -7.4712E-06 -0.71097 -0.00034214 -0.7265 -0.00034961 481.23355134172544 21.041 0.45567 21.041 20.668 21.124 0 15 12 3 0 0 0 0.50419 1 3443 3443 19.362 0 1 343350 180 5425 131 131 184 184 -0.0305688772987196 ADVSWHSL 8 Unmodified _ADVSWHSL_ 0 0 0 ENSG00000112293|ENST00000230036|GPLD1;nc|ENSG00000112293|P80108-2|GPLD1;ENST00000378243.8_1_6:24473808-24489784:-|nuORF ENSG00000112293|ENST00000230036|GPLD1 ENSG00000112293|ENST00000230036|GPLD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2239990234375 2 457.721967 913.429381 -0.42184 -0.00019308 0.60752 0.00027807 0.18568 8.499E-05 457.722154387197 23.507 0.35027 21.718 21.494 21.844 -1.7886 22 9 3 0 0 0 0.64227 1 3760 3760 19.439 2.4967 1 4099200 181 2682 132 132 185 185 -0.030796476877753776 ADVYNYQHRD 10 Unmodified _ADVYNYQHRD_ 0 0 0 REV__ENSG00000136802|ENST00000372600|LRRC8A REV__ENSG00000136802|ENST00000372600|LRRC8A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 427.1493225097656 3 427.526664 1279.55816 NaN NaN NaN NaN NaN NaN NaN 53.932 1 53.932 53.432 54.432 0 0 0 0 0.22588 1 10279 10279 3.0723 0 1 + 182 16348 133 133 186 186 -0.07043337515483472 ADYLAHES 8 Unmodified _ADYLAHES_ 0 0 0 ENST00000598969.5_1_19:19021778-19023834:-|nuORF;ENST00000597646.5_1_19:19021778-19021922:-|nuORF;ENST00000597026.5_1_19:19017767-19023834:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE ENST00000598969.5_1_19:19021778-19023834:-|nuORF ENST00000598969.5_1_19:19021778-19023834:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7528991699219 2 453.203607 904.392661 0.057882 2.6232E-05 0.19672 8.9153E-05 0.2546 0.00011539 453.2035277988828 32.386 0.32249 30.156 30.008 30.331 -2.2305 14 8 2 0 0 0 0.49114 1 5922 5922 28.487 14.581 1 375100 183 2331 134 134 187 187 -0.06335944304328223 ADYLAHES 8 Unmodified _ADYLAHES_ 0 0 0 ENST00000598969.5_1_19:19021778-19023834:-|nuORF;ENST00000597646.5_1_19:19021778-19021922:-|nuORF;ENST00000597026.5_1_19:19017767-19023834:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE ENST00000598969.5_1_19:19021778-19023834:-|nuORF ENST00000598969.5_1_19:19021778-19023834:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76190185546875 2 453.203607 904.392661 0.2149 9.7393E-05 0.41106 0.0001863 0.62596 0.00028369 453.20357155512977 32.261 0.27874 30.234 30.079 30.357 -2.0264 13 7 2 0 0 0 0.36038 1 5590 5590 34.102 19.264 1 428340 184 2331 134 134 188 188 -0.06335944304328223 AEAAAAALAAM 11 Unmodified _AEAAAAALAAM_ 0 0 0 ENST00000405914.1_1_2:26204855-26205579:-|nuORF ENST00000405914.1_1_2:26204855-26205579:-|nuORF ENST00000405914.1_1_2:26204855-26205579:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24603271484375 2 480.744585 959.474617 0.40216 0.00019334 -0.36718 -0.00017652 0.034982 1.6817E-05 480.7444152277515 89.704 0.60279 85.66 85.452 86.055 -4.0443 21 16 2 0 0 0 0.43167 1 17100 17100 4.8309 3.0886 1 761740 185 9537 135 135 189 189 -0.0067416521690120135 AEAAAAVVAAA 11 Unmodified _AEAAAAVVAAA_ 0 0 0 nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant nc|ENSG00000196504|O75400-3|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.228515625 2 457.750724 913.486896 -0.064963 -2.9737E-05 0.14367 6.5763E-05 0.078703 3.6026E-05 457.7507003062382 68.027 0.42608 68.027 67.755 68.181 0 21 11 2 0 0 0 0.28696 1 13111 13111 14.319 13.692 1 2859300 186 7274 136 136 190 190 0.026691945177958587 AEAAAAVVAAA 11 Unmodified _AEAAAAVVAAA_ 0 0 0 nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant nc|ENSG00000196504|O75400-3|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.750724 913.486896 -0.22296 -0.00010206 0.17063 7.8106E-05 -0.052335 -2.3956E-05 457.75079226002873 71.15 0.42614 67.901 67.635 68.062 -3.2492 -0.063283 1.4543E-05 NaN 14.319 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3142100 187 7274 136 136 0.026691945177958587 AEAAAEAQL 9 Unmodified _AEAAAEAQL_ 0 0 0 REV__ENST00000547724.1_1_12:42631496-42631532:-|nuORF REV__ENST00000547724.1_1_12:42631496-42631532:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2187805175781 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 38.543 1 36.138 35.638 36.638 -2.4049 0 0 0 0.16428 1 6861 6861 28.487 0 1 + 188 21494 137 137 191 191 -0.017353712702515622 AEAAAERR 8 Unmodified _AEAAAERR_ 0 0 0 REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23199462890625 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 38.468 1 35.919 35.419 36.419 -2.5491 0 0 0 0.16002 1 7130 7130 36.044 3.9272 1 + 189 14181 138 138 192 192 0.00510272918040755 AEAAAERR 8 Unmodified _AEAAAERR_ 0 0 0 REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23052978515625 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 38.698 1 36.149 35.649 36.649 -2.5491 0 0 0 0.22636 1 7181 7181 0.25148 0 1 + 190 14181 138 138 193 193 0.00510272918040755 AEAAAERR 8 Unmodified _AEAAAERR_ 0 0 0 REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23052978515625 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 38.719 1 36.17 35.67 36.67 -2.5491 0 0 0 0.16002 1 7185 7185 36.044 12.896 1 + 191 14181 138 138 194 194 0.00510272918040755 AEAAAERR 8 Unmodified _AEAAAERR_ 0 0 0 REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2306213378906 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 38.416 1 35.974 35.474 36.474 -2.4419 0 0 0 0.22684 1 6835 6835 0.25148 0 1 + 192 14181 138 138 195 195 0.00510272918040755 AEAAAERR 8 Unmodified _AEAAAERR_ 0 0 0 REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2306213378906 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 38.426 1 35.984 35.484 36.484 -2.4419 0 0 0 0.16002 1 6837 6837 36.044 12.896 1 + 193 14181 138 138 196 196 0.00510272918040755 AEAAAERR 8 Unmodified _AEAAAERR_ 0 0 0 REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23101806640625 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 38.655 1 36.213 35.713 36.713 -2.4419 0 0 0 0.22636 1 6886 6886 0.25148 0 1 + 194 14181 138 138 197 197 0.00510272918040755 AEAAAERR 8 Unmodified _AEAAAERR_ 0 0 0 REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23101806640625 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 38.667 1 36.225 35.725 36.725 -2.4419 0 0 0 0.16002 1 6888 6888 36.044 3.9272 1 + 195 14181 138 138 198 198 0.00510272918040755 AEAAAHRPP 9 Unmodified _AEAAAHRPP_ 0 0 0 ENST00000377321.5_1_11:64577571-64578006:-|nuORF ENST00000377321.5_1_11:64577571-64578006:-|nuORF ENST00000377321.5_1_11:64577571-64578006:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23931884765625 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 59.185 1 59.185 58.685 59.685 0 0 0 0 0.23508 1 11338 11338 7.9102 0.62092 1 196 9261 139 139 199 199 0.004668632977086418 AEAAALEVLA 10 Unmodified _AEAAALEVLA_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72430419921875 2 479.266207 956.517862 -0.055777 -2.6732E-05 0.17878 8.5681E-05 0.123 5.8949E-05 479.26608031952463 129.71 0.79819 129.71 129.3 130.1 0 26 22 2 0 0 0 0.78938 1 25623 25623 27.629 15.388 1 2694800 197 3246 140 140 200 200 0.03786347832044612 AEAAALEVLA 10 Unmodified _AEAAALEVLA_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.266207 956.517862 0.013299 6.3735E-06 -0.05173 -2.4793E-05 -0.038432 -1.8419E-05 479.2660616365533 134.18 0.91885 129.54 128.92 129.84 -4.6399 -0.085133 -8.504E-05 NaN 34.402 37 25 2 NaN NaN NaN NaN 0 NaN NaN 0 2417200 198 3246 140 140 0.03786347832044612 AEAAALEVLA 10 Unmodified _AEAAALEVLA_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.266207 956.517862 0.054109 2.5933E-05 -0.0040182 -1.9258E-06 0.050091 2.4007E-05 479.2661035521093 134.47 0.76471 129.6 129.16 129.93 -4.8726 -0.026943 -3.9306E-05 NaN 34.402 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2340200 199 3246 140 140 0.03786347832044612 AEAACPAIK 9 Unmodified _AEAACPAIK_ 0 0 0 REV__ENST00000380877.7_1_15:50647274-50647388:-|nuORF REV__ENST00000380877.7_1_15:50647274-50647388:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2181701660156 2 437.228571 872.442588 NaN NaN NaN NaN NaN NaN NaN 43.782 1 41.016 40.516 41.516 -2.7661 0 0 0 0.23508 1 7911 7911 7.2892 1.5288 1 + 200 21162 141 141 201 201 0.0012646709997170547 AEAACPAIK 9 Unmodified _AEAACPAIK_ 0 0 0 REV__ENST00000380877.7_1_15:50647274-50647388:-|nuORF REV__ENST00000380877.7_1_15:50647274-50647388:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22845458984375 2 437.228571 872.442588 NaN NaN NaN NaN NaN NaN NaN 66.827 1 63.331 62.831 63.831 -3.4965 0 0 0 0.23508 1 12531 12531 11.64 3.047 1 + 201 21162 141 141 202 202 0.0012646709997170547 AEAADFYYQ 9 Unmodified _AEAADFYYQ_ 0 0 0 REV__ENSG00000115306|ENST00000356805|SPTBN1 REV__ENSG00000115306|ENST00000356805|SPTBN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20123291015625 3 359.822307 1076.44509 -1.1508 -0.00041407 0.94871 0.00034137 -0.20205 -7.2701E-05 359.8225628924858 23.17 0.20283 21.381 21.223 21.426 -1.7886 8 5 2 0 0 0 0.88284 1 3716 3716 0.96228 0 1 253850 + 202 15420 142 142 203 203 -0.09007405961392578 AEAAEAAAGL 10 Unmodified _AEAAEAAAGL_ 0 0 0 REV__ENSG00000159200|ENST00000313806|RCAN1 REV__ENSG00000159200|ENST00000313806|RCAN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21832275390625 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 38.575 1 36.026 35.526 36.526 -2.5491 0 0 0 0.10197 1 7154 7154 43.858 9.7559 1 + 203 17362 143 143 204 204 -0.017353712702515622 AEAAERPPS 9 Unmodified _AEAAERPPS_ 0 0 0 ENST00000388995.10_2_17:18907286-18907481:-|nuORF ENST00000388995.10_2_17:18907286-18907481:-|nuORF ENST00000388995.10_2_17:18907286-18907481:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2516174316406 2 464.230156 926.445759 0.044877 2.0833E-05 0.99538 0.00046208 1.0403 0.00048292 464.23009779542554 15.297 0.52395 15.297 14.914 15.438 0 34 14 3 0 0 0 0.60061 1 2300 2300 13.042 3.6593 1 1310100 204 9351 144 144 205 205 -0.02040566521668552 AEAAERPPS 9 Unmodified _AEAAERPPS_ 0 0 0 ENST00000388995.10_2_17:18907286-18907481:-|nuORF ENST00000388995.10_2_17:18907286-18907481:-|nuORF ENST00000388995.10_2_17:18907286-18907481:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 464.1248779296875 2 464.230156 926.445759 -0.50916 -0.00023637 1.4778 0.00068603 0.96861 0.00044966 464.23037410158946 16.252 0.56295 15.036 14.619 15.182 -1.2159 28 15 3 0 0 0 0.85913 1 2531 2531 10.074 3.3508 1 728660 205 9351 144 144 206 206 -0.02040566521668552 AEAAGEVRA 9 Unmodified _AEAAGEVRA_ 0 0 0 ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2245788574219 2 437.224874 872.435195 0.11511 5.0329E-05 -0.61586 -0.00026927 -0.50075 -0.00021894 437.2246043812266 18.599 0.66422 18.599 18.402 19.066 0 47 18 4 0 0 0 8.0306E-08 2 3006 3006;3054 149.91 46.166 1 36085000 206 8252 145 145 207;208 207 -0.006125491760940349 AEAAGEVRA 9 Unmodified _AEAAGEVRA_ 0 0 0 ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2247314453125 2 437.224874 872.435195 0.072115 3.1531E-05 -0.29789 -0.00013024 -0.22577 -9.8713E-05 437.2246957140087 19.929 0.48489 18.532 18.344 18.829 -1.3966 31 13 4 0 0 0 0.00011658 2 3289 3275;3289 125.53 36.575 1 12459000 207 8252 145 145 209;210 210 -0.006125491760940349 AEAAGEVRA 9 Unmodified _AEAAGEVRA_ 0 0 0 ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22442626953125 2 437.224874 872.435195 -0.32522 -0.0001422 0.21743 9.5064E-05 -0.1078 -4.7131E-05 437.224925032542 19.865 0.45435 18.54 18.312 18.766 -1.3251 24 12 3 0 0 0 0.11836 2 3028 3028;3075 49.527 7.6876 1 3857800 208 8252 145 145 211;212 211 -0.006125491760940349 AEAAGEVRA 9 Unmodified _AEAAGEVRA_ 0 0 0 ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22503662109375 2 437.224874 872.435195 -1.0938 -0.00047825 1.079 0.00047175 -0.014863 -6.4984E-06 437.22521555279144 20.068 0.37893 18.433 18.261 18.64 -1.6351 20 10 3 0 0 0 0.11282 2 3051 3051;3105 51.415 1.4822 1 1575700 209 8252 145 145 213;214 213 -0.006125491760940349 AEAAGPCGET 10 Unmodified _AEAAGPCGET_ 0 0 0 REV__ENST00000474844.5_1_1:46806455-46806581:+|nuORF REV__ENST00000474844.5_1_1:46806455-46806581:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7581481933594 2 453.1871 904.359646 0.44963 0.00020376 1.0252 0.00046462 1.4749 0.00066839 453.1890581945392 50.106 0.98444 50.106 49.62 50.604 0 89 28 4 0 0 0 0.64074 1 9439 9439 34.402 28.196 1 11706000 + 210 22087 146 146 215 215 -0.09635894418681801 AEAAGPCGET 10 Unmodified _AEAAGPCGET_ 0 0 0 REV__ENST00000474844.5_1_1:46806455-46806581:+|nuORF REV__ENST00000474844.5_1_1:46806455-46806581:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.1871 904.359646 -0.30722 -0.00013923 3.4442 0.0015609 3.137 0.0014217 453.18938956654114 52.764 0.76144 49.88 49.522 50.283 -2.8837 -0.090847 0.001697 NaN 27.629 62 21 4 NaN NaN NaN NaN 0 NaN NaN 0 5081700 + 211 22087 146 146 -0.09635894418681801 AEAAGPCGET 10 Unmodified _AEAAGPCGET_ 0 0 0 REV__ENST00000474844.5_1_1:46806455-46806581:+|nuORF REV__ENST00000474844.5_1_1:46806455-46806581:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 453.1871 904.359646 0.0013825 6.2654E-07 -0.7097 -0.00032163 -0.70832 -0.000321 453.1894225062348 53.014 0.73682 49.927 49.619 50.356 -3.0876 -0.044469 -0.002068 NaN 27.629 107 20 6 NaN NaN NaN NaN 0 NaN NaN 0 10626000 + 212 22087 146 146 -0.09635894418681801 AEAAHPPP 8 Unmodified _AEAAHPPP_ 0 0 0 ENST00000432853.1_1_2:132592224-132593771:-|nuORF ENST00000432853.1_1_2:132592224-132593771:-|nuORF ENST00000432853.1_1_2:132592224-132593771:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.48699951171875 2 395.198128 788.381703 NaN NaN NaN NaN NaN NaN NaN 86.308 1 82.581 82.081 83.081 -3.727 0 0 0 0.23366 1 16871 16871 1.4551 1.2036 1 213 9803 147 147 216 216 -0.02095301887959522 AEAAKLLCIY 10 Unmodified _AEAAKLLCIY_ 0 0 0 REV__ENSG00000169933|ENST00000675598|FRMPD4 REV__ENSG00000169933|ENST00000675598|FRMPD4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7904663085938 2 547.79936 1093.58417 NaN NaN NaN NaN NaN NaN NaN 68.433 1 64.897 64.397 65.397 -3.5362 0 0 0 0.22588 1 12860 12860 10.074 2.1638 1 + 214 18130 148 148 217 217 0.04111840402447342 AEAALEAVR 9 Unmodified _AEAALEAVR_ 0 0 0 ENSG00000243789|ENST00000397299|JMJD7;ENST00000431823.1_1_15:42120322-42120605:+|nuORF;ENST00000405106.2_1_15:42120322-42121324:+|nuORF;ENST00000408047.5_1_15:42120322-42127123:+|nuORF;ENST00000491746.5_1_15:42120322-42127116:+|nuORF;ENST00000490848.5_1_15:42120322-42128845:+|nuORF;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B ENSG00000243789|ENST00000397299|JMJD7 ENSG00000243789|ENST00000397299|JMJD7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2563171386719 2 465.256174 928.497795 0.34697 0.00016143 -0.46247 -0.00021517 -0.1155 -5.3737E-05 465.2559334161572 42.386 0.59082 42.386 42.048 42.639 0 36 16 3 0 0 0 0.36931 1 7876 7876 27.629 0.74515 1 3134300 215 7874 149 149 218 218 0.030685968920806772 AEAALEAVR 9 Unmodified _AEAALEAVR_ 0 0 0 ENSG00000243789|ENST00000397299|JMJD7;ENST00000431823.1_1_15:42120322-42120605:+|nuORF;ENST00000405106.2_1_15:42120322-42121324:+|nuORF;ENST00000408047.5_1_15:42120322-42127123:+|nuORF;ENST00000491746.5_1_15:42120322-42127116:+|nuORF;ENST00000490848.5_1_15:42120322-42128845:+|nuORF;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B ENSG00000243789|ENST00000397299|JMJD7 ENSG00000243789|ENST00000397299|JMJD7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2557067871094 2 465.256174 928.497795 -0.064581 -3.0047E-05 -0.23525 -0.00010945 -0.29983 -0.0001395 465.25611791511335 45.073 0.57214 42.208 41.877 42.449 -2.8653 36 15 3 0 0 0 0.54076 1 8132 8132 17.113 0.96379 1 1695500 216 7874 149 149 219 219 0.030685968920806772 AEAALEAVR 9 Unmodified _AEAALEAVR_ 0 0 0 ENSG00000243789|ENST00000397299|JMJD7;ENST00000431823.1_1_15:42120322-42120605:+|nuORF;ENST00000405106.2_1_15:42120322-42121324:+|nuORF;ENST00000408047.5_1_15:42120322-42127123:+|nuORF;ENST00000491746.5_1_15:42120322-42127116:+|nuORF;ENST00000490848.5_1_15:42120322-42128845:+|nuORF;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B ENSG00000243789|ENST00000397299|JMJD7 ENSG00000243789|ENST00000397299|JMJD7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2565002441406 2 465.256174 928.497795 -0.10695 -4.9759E-05 -0.085844 -3.9939E-05 -0.19279 -8.9698E-05 465.2562434181359 45.071 0.73932 42.323 41.883 42.623 -2.7475 38 20 3 0 0 0 0.36931 1 8211 8211 27.629 2.2295 1 2277100 217 7874 149 149 220 220 0.030685968920806772 AEAANLNRG 9 Unmodified _AEAANLNRG_ 0 0 0 REV__SPTBN2|p.D1831N|1|0.37|ENSG00000173898|chr11:66691358-66691358|C/T|missense_variant REV__SPTBN2|p.D1831N|1|0.37|ENSG00000173898|chr11:66691358-66691358|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2380065917969 2 458.235773 914.456993 NaN NaN NaN NaN NaN NaN NaN 50.291 1 47.285 46.785 47.785 -3.0068 0 0 0 0.23277 1 9241 9241 13.906 1.3745 1 + 218 24732 150 150 221 221 -0.0036574442752908 AEAAPAEAP 9 Unmodified _AEAAPAEAP_ 0 0 0 REV__nc|ENSG00000124782|Q92766-5|RREB1 REV__nc|ENSG00000124782|Q92766-5|RREB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 413.69940185546875 2 413.7007 825.386848 NaN NaN NaN NaN NaN NaN NaN 69.235 1 65.699 65.199 66.199 -3.5362 0 0 0 0.18755 1 13035 13035 1.6919 1.2836 1 + 219 15794 151 151 222 222 -0.03283042816008219 AEAAPPLRP 9 Unmodified _AEAAPPLRP_ 0 0 0 ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5389099121094 2 461.261259 920.507966 -0.12622 -5.8221E-05 0.32069 0.00014792 0.19447 8.9703E-05 461.2613630242736 66.806 1.618 66.806 66.172 67.79 0 94 45 3 0 0 0 0.11402 1 12976 12976 69.105 32.978 1 8614400 220 3617 152 152 223 223 0.0445320461733445 AEAAPPLRP 9 Unmodified _AEAAPPLRP_ 0 0 0 ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5411071777344 2 461.261259 920.507966 -0.18246 -8.4161E-05 0.49979 0.00023054 0.31733 0.00014637 461.26140560784535 70.088 1.7319 66.839 66.119 67.85 -3.2492 100 48 3 0 0 0 0.11402 1 13651 13651 60.074 20.124 1 7782100 221 3617 152 152 224 224 0.0445320461733445 AEAAPPLRP 9 Unmodified _AEAAPPLRP_ 0 0 0 ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.24017333984375 2 461.261259 920.507966 0.016212 7.478E-06 0.42312 0.00019517 0.43933 0.00020265 461.2613325501188 55.288 1.438 52.152 51.463 52.901 -3.1352 67 40 2 0 0 0 0.40885 1 10091 10091 14.957 4.8832 1 4082600 222 3617 152 152 225 225 0.0445320461733445 AEAAPPLRP 9 Unmodified _AEAAPPLRP_ 0 0 0 ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5220642089844 2 461.261259 920.507966 0.32418 0.00014953 -0.030577 -1.4104E-05 0.29361 0.00013543 461.26120390381067 70.5 1.6453 66.92 66.176 67.821 -3.5798 106 46 3 0 0 0 0.14998 1 13317 13317 60.074 36.053 1 5729500 223 3617 152 152 226 226 0.0445320461733445 AEAAPPLRP 9 Unmodified _AEAAPPLRP_ 0 0 0 ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.54071044921875 2 461.261259 920.507966 -0.018978 -8.7538E-06 0.29828 0.00013759 0.2793 0.00012883 461.261305207126 55.153 1.5262 52.015 51.448 52.975 -3.1377 74 43 2 0 0 0 0.15214 2 10211 10211;10326 43.858 26.176 1 4638900 224 3617 152 152 227;228 227 0.0445320461733445 AEAAPPLRP 9 Unmodified _AEAAPPLRP_ 0 0 0 ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.52301025390625 2 461.261259 920.507966 0.34433 0.00015883 -0.041993 -1.937E-05 0.30234 0.00013946 461.26117448295787 70.295 1.5473 66.828 66.148 67.696 -3.467 106 43 3 0 0 0 0.36034 1 13224 13224 43.858 21.122 1 7237100 225 3617 152 152 229 229 0.0445320461733445 AEAAPPLRP 9 Unmodified _AEAAPPLRP_ 0 0 0 ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.261259 920.507966 0.28506 0.00013149 0.32439 0.00014963 0.60945 0.00028112 461.2612749552192 51.996 1.344 51.996 51.441 52.785 0 -0.10845 -0.00014359 NaN 43.858 66 37 2 NaN NaN NaN NaN 0 NaN NaN 0 4124600 226 3617 152 152 0.0445320461733445 AEAAPPLRP 9 Unmodified _AEAAPPLRP_ 0 0 0 ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.261259 920.507966 -0.28529 -0.00013159 0.87737 0.0004047 0.59208 0.0002731 461.2615433810825 55.137 1.3426 52.253 51.531 52.874 -2.8837 0.14917 0.00036654 NaN 43.858 55 38 2 NaN NaN NaN NaN 0 NaN NaN 0 5096400 227 3617 152 152 0.0445320461733445 AEAAQRFQ 8 Unmodified _AEAAQRFQ_ 0 0 0 ENST00000560002.5_1_15:56945693-56945987:-|nuORF ENST00000560002.5_1_15:56945693-56945987:-|nuORF ENST00000560002.5_1_15:56945693-56945987:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.142822265625 2 460.732866 919.451179 NaN NaN NaN NaN NaN NaN NaN 65.867 1 65.867 65.367 66.367 0 0 0 0 0.20896 1 12710 12710 18.135 4.6271 1 228 11280 153 153 230 230 -0.011768429391850077 AEAARPPTPH 10 Unmodified _AEAARPPTPH_ 0 0 0 REV__ENST00000489702.6_2_7:128577736-128582314:+|nuORF REV__ENST00000489702.6_2_7:128577736-128582314:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.677978515625 2 523.772522 1045.53049 0.24649 0.0001291 -0.76639 -0.00040141 -0.5199 -0.00027231 523.7725636198459 26.016 0.93319 26.016 25.632 26.566 0 42 26 3 0 0 0 0.64074 1 4589 4589 34.402 3.7652 1 12799000 + 229 22296 154 154 231 231 0.009548040149411463 AEAASKWAA 9 Unmodified _AEAASKWAA_ 0 0 0 nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-7|PPHLN1;ENST00000547440.1_1_12:42781241-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-6|PPHLN1 nc|ENSG00000134283|Q8NEY8|PPHLN1 nc|ENSG00000134283|Q8NEY8|PPHLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7550354003906 2 452.729792 903.445031 0.24436 0.00011063 -0.18833 -8.5264E-05 0.056031 2.5367E-05 452.7296481857188 36.024 0.7716 33.747 33.316 34.088 -2.2766 62 21 4 0 0 0 0.15889 2 6373 6311;6373 22.736 9.1214 1 15081000 230 12334 155 155 232;233 233 -0.010553611707223354 AEAATAFGA 9 Unmodified _AEAATAFGA_ 0 0 0 nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 809.389892578125 1 808.383559 807.376283 0.30523 0.00024674 0.22874 0.00018491 0.53397 0.00043165 808.3835559400909 56.75 1.7498 53.561 52.67 54.42 -3.1895 110 49 3 0 0 0 0.16442 1 10407 10407 42.095 0 1 11091000 231 3319 156 156 234 234 -0.03511025470425011 AEAATAFGA 9 Unmodified _AEAATAFGA_ 0 0 0 nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 808.383559 807.376283 0.46137 0.00037296 0.089058 7.1993E-05 0.55043 0.00044495 808.3835491700355 53.764 1.5245 53.764 53.001 54.525 0 0.10145 -4.5908E-05 NaN 42.095 105 42 3 NaN NaN NaN NaN 0 NaN NaN 0 10198000 232 3319 156 156 -0.03511025470425011 AEAAVTWVAY 10 Unmodified _AEAAVTWVAY_ 0 0 0 ENSG00000180929|ENST00000322241|GPR62 ENSG00000180929|ENST00000322241|GPR62 ENSG00000180929|ENST00000322241|GPR62 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.260986328125 2 540.771657 1079.52876 0.10659 5.7639E-05 -3.1102 -0.0016819 -3.0036 -0.0016243 540.7692979782516 49.048 0.10336 46.05 45.964 46.067 -2.999 4 2 2 0 0 0 0.29353 1 8959 8959 37.974 8.8924 1 373820 233 6703 157 157 235 235 -0.007822497936558648 AEAAVVAVA 9 Unmodified _AEAAVVAVA_ 0 0 0 ENSG00000211450|ENST00000534355|SELENOH ENSG00000211450|ENST00000534355|SELENOH ENSG00000211450|ENST00000534355|SELENOH MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 401.2301940917969 2 400.729261 799.443968 -0.35847 -0.00014365 -0.21243 -8.5129E-05 -0.5709 -0.00022878 400.7292686605579 67.238 0.27968 67.238 67.124 67.403 0 12 7 2 0 0 0 0.24122 1 13002 13002 11.749 2.8363 1 792320 234 7677 158 158 236 236 0.036224244603772604 AEAAVVAVA 9 Unmodified _AEAAVVAVA_ 0 0 0 ENSG00000211450|ENST00000534355|SELENOH ENSG00000211450|ENST00000534355|SELENOH ENSG00000211450|ENST00000534355|SELENOH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 402.21160888671875 2 400.729261 799.443968 -0.24778 -9.9292E-05 0.18421 7.3818E-05 -0.063569 -2.5474E-05 400.7292962867766 68.005 2.4785 64.897 64.522 67.001 -3.1086 171 70 4 0 0 0 0.066709 2 13171 13171;13298 26.995 24.113 1 268310000 235 7677 158 158 237;238 237 0.036224244603772604 AEAAVVAVA 9 Unmodified _AEAAVVAVA_ 0 0 0 ENSG00000211450|ENST00000534355|SELENOH ENSG00000211450|ENST00000534355|SELENOH ENSG00000211450|ENST00000534355|SELENOH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 402.2121887207031 2 400.729261 799.443968 0.32004 0.00012825 -0.35074 -0.00014055 -0.030704 -1.2304E-05 400.7290499419594 68.453 1.765 64.916 64.59 66.355 -3.5362 127 49 4 0 0 0 0.066709 1 12862 12862 26.995 8.3814 1 160240000 236 7677 158 158 239 239 0.036224244603772604 AEAAVVAVA 9 Unmodified _AEAAVVAVA_ 0 0 0 ENSG00000211450|ENST00000534355|SELENOH ENSG00000211450|ENST00000534355|SELENOH ENSG00000211450|ENST00000534355|SELENOH MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 400.729261 799.443968 -0.35108 -0.00014069 0.32095 0.00012861 -0.030133 -1.2075E-05 400.72935149788 65.086 2.4412 65.086 64.682 67.124 0 0.099337 0.00015148 NaN 26.995 165 69 4 NaN NaN NaN NaN 0 NaN NaN 0 348600000 237 7677 158 158 0.036224244603772604 AEAAVVAVA 9 Unmodified _AEAAVVAVA_ 0 0 0 ENSG00000211450|ENST00000534355|SELENOH ENSG00000211450|ENST00000534355|SELENOH ENSG00000211450|ENST00000534355|SELENOH MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 400.729261 799.443968 -0.19578 -7.8454E-05 0.14161 5.6748E-05 -0.054166 -2.1706E-05 400.7292699794213 68.437 2.4355 65.047 64.56 66.996 -3.3903 0.060599 7.7515E-06 NaN 26.995 186 69 5 NaN NaN NaN NaN 0 NaN NaN 0 170160000 238 7677 158 158 0.036224244603772604 AEAAVVLEA 9 Unmodified _AEAAVVLEA_ 0 0 0 SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1;nc|ENSG00000168061|A6NKF1-2|SAC3D1;ENST00000530213.5_1_11:64808530-64811777:+|nuORF SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22857666015625 2 436.739825 871.465098 -0.084972 -3.7111E-05 0.21747 9.4979E-05 0.1325 5.7868E-05 436.73985943712376 92.51 1.1214 88.702 88.174 89.296 -3.8083 70 32 3 0 0 0 0.31728 1 17624 17624 6.4869 2.0099 1 8453600 239 5875 159 159 240 240 0.024223897692422725 AEADAIIQM 9 Unmodified _AEADAIIQM_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2357177734375 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 118.41 1 113.91 113.41 114.41 -4.502 0 0 0 0.063411 1 23348 23348 46.021 19.137 1 240 1701 160 160 241 241 -0.023178714537721135 AEADAIIQM 9 Unmodified _AEADAIIQM_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2543029785156 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 118.48 1 113.98 113.48 114.48 -4.502 0 0 0 0.063411 1 23363 23363 46.021 11.919 1 241 1701 160 160 242 242 -0.023178714537721135 AEADAIIQM 9 Unmodified _AEADAIIQM_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2366943359375 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 118.65 1 114.15 113.65 114.65 -4.502 0 0 0 0.15832 1 23395 23395 18.614 12.127 1 242 1701 160 160 243 243 -0.023178714537721135 AEADAIIQM 9 Unmodified _AEADAIIQM_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2356872558594 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 118.64 1 114.03 113.53 114.53 -4.6106 0 0 0 0.04451 1 22765 22765 54.774 14.816 1 243 1701 160 160 244 244 -0.023178714537721135 AEADAIIQM 9 Unmodified _AEADAIIQM_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23651123046875 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 118.41 1 114 113.5 114.5 -4.4088 0 0 0 0.1761 1 22785 22785 26.884 11.036 1 244 1701 160 160 245 245 -0.023178714537721135 AEADANEPYSI 11 Unmodified _AEADANEPYSI_ 0 0 0 REV__ENST00000397861.6_1_17:54910471-54911016:-|nuORF REV__ENST00000397861.6_1_17:54910471-54911016:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2597045898438 2 590.26185 1178.50915 NaN NaN NaN NaN NaN NaN NaN 16.754 1 16.754 16.254 17.254 0 0 0 0 0.23429 1 2618 2618 4.897 0 1 + 245 21313 161 161 246 246 -0.072966705951103 AEADCHQV 8 Unmodified _AEADCHQV_ 0 0 0 REV__ENST00000409283.6_1_2:158626890-158626938:-|nuORF REV__ENST00000409283.6_1_2:158626890-158626938:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2297668457031 2 436.681985 871.349416 0.2459 0.00010738 1.0916 0.0004767 1.3375 0.00058408 436.6823546514327 31.653 0.67225 29.626 29.302 29.974 -2.0264 40 18 3 0 0 0 8448 1 5532 5532 0.063987 0 1 2305700 + 246 21406 162 162 247 247 -0.0914045735325999 AEADHLFL 8 Unmodified _AEADHLFL_ 0 0 0 ENST00000477118.2_3_1:201762910-201763243:+|nuORF ENST00000477118.2_3_1:201762910-201763243:+|nuORF ENST00000477118.2_3_1:201762910-201763243:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2303466796875 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 35.046 1 32.653 32.153 33.153 -2.3938 0 0 0 0.22934 1 6450 6450 0.25148 0.12366 1 247 10299 163 163 248 248 -0.01086477027968158 AEADHLFL 8 Unmodified _AEADHLFL_ 0 0 0 ENST00000477118.2_3_1:201762910-201763243:+|nuORF ENST00000477118.2_3_1:201762910-201763243:+|nuORF ENST00000477118.2_3_1:201762910-201763243:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2303466796875 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 35.189 1 32.913 32.413 33.413 -2.2766 0 0 0 0.22934 1 6182 6182 0.25148 0 1 248 10299 163 163 249 249 -0.01086477027968158 AEADIISTV 9 Unmodified _AEADIISTV_ 0 0 0 PPP2R2A|p.S282Pfs*10|2|0.41|ENSG00000221914|chr8:26363756-26363756|T/-|frameshift_variant;ENSG00000221914|ENST00000380737|PPP2R2A;ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000521484.5_1_8:26151159-26197424:+|nuORF;ENST00000522482.5_1_8:26151222-26212062:+|nuORF;PPP2R2A|p.N106Kfs*11|1|0.37|ENSG00000221914|chr8:26354599-26354600|-/A|frameshift_variant PPP2R2A|p.S282Pfs*10|2|0.41|ENSG00000221914|chr8:26363756-26363756|T/-|frameshift_variant PPP2R2A|p.S282Pfs*10|2|0.41|ENSG00000221914|chr8:26363756-26363756|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2414855957031 2 459.742565 917.470577 -0.3954 -0.00018178 0.57619 0.0002649 0.18079 8.3117E-05 459.7431528115689 105.8 0.176 101.54 101.41 101.59 -4.2638 6 4 2 0 0 0 0.48644 1 20835 20835 20.454 2.3186 1 476700 249 6413 164 164 250 250 0.008540685610455512 AEADKQLF 8 Unmodified _AEADKQLF_ 0 0 0 REV__ENSG00000104529|ENST00000618139|EEF1D REV__ENSG00000104529|ENST00000618139|EEF1D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5264587402344 2 461.23745 920.460347 0.12695 5.8553E-05 0.16454 7.5893E-05 0.29149 0.00013445 461.23746245615354 74.568 0.80106 70.891 70.516 71.318 -3.6764 56 22 3 0 0 0 0.64118 1 14158 14158 37.974 7.3375 1 13039000 + 250 14926 165 165 251 251 -0.0030649437351257802 AEADKQLF 8 Unmodified _AEADKQLF_ 0 0 0 REV__ENSG00000104529|ENST00000618139|EEF1D REV__ENSG00000104529|ENST00000618139|EEF1D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5224914550781 2 461.23745 920.460347 0.33983 0.00015674 0.033147 1.5289E-05 0.37298 0.00017203 461.23739463820147 74.531 0.87022 70.937 70.537 71.407 -3.594 61 24 3 0 0 0 0.52597 1 14242 14242 26.884 2.8631 1 17423000 + 251 14926 165 165 252 252 -0.0030649437351257802 AEADKQLF 8 Unmodified _AEADKQLF_ 0 0 0 REV__ENSG00000104529|ENST00000618139|EEF1D REV__ENSG00000104529|ENST00000618139|EEF1D MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.23745 920.460347 0.055419 2.5561E-05 0.007128 3.2877E-06 0.062547 2.8849E-05 461.23737631490974 71.022 1.1161 71.022 70.695 71.811 0 0.07921 -0.00014211 NaN 26.884 74 31 4 NaN NaN NaN NaN 0 NaN NaN 0 16165000 + 252 14926 165 165 -0.0030649437351257802 AEADKQLF 8 Unmodified _AEADKQLF_ 0 0 0 REV__ENSG00000104529|ENST00000618139|EEF1D REV__ENSG00000104529|ENST00000618139|EEF1D MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.23745 920.460347 -0.16294 -7.5155E-05 0.4579 0.0002112 0.29495 0.00013604 461.2375931275924 74.285 0.83894 70.921 70.539 71.378 -3.3643 -0.022188 0.00027371 NaN 26.884 60 23 3 NaN NaN NaN NaN 0 NaN NaN 0 18189000 + 253 14926 165 165 -0.0030649437351257802 AEADKQLF 8 Unmodified _AEADKQLF_ 0 0 0 REV__ENSG00000104529|ENST00000618139|EEF1D REV__ENSG00000104529|ENST00000618139|EEF1D MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.23745 920.460347 0.33983 0.00015674 0.033147 1.5289E-05 0.37298 0.00017203 461.23739463820147 74.531 0.87022 70.937 70.537 71.407 -3.594 -0.0055927 -0.00011811 NaN 26.884 61 24 3 NaN NaN NaN NaN 0 NaN NaN 0 17423000 + 254 14926 165 165 -0.0030649437351257802 AEADRLLQ 8 Unmodified _AEADRLLQ_ 0 0 0 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2207336425781 2 458.248349 914.482145 0.13577 6.2217E-05 1.2587 0.00057678 1.3944 0.000639 458.2482553841402 34.546 0.55554 32.293 31.977 32.532 -2.2527 31 15 3 0 0 0 0.70215 1 6040 6040 29.082 0 1 1401200 255 4133 166 166 253 253 0.021483103750597365 AEADRVAAA 9 Unmodified _AEADRVAAA_ 0 0 0 nc|ENSG00000140479|P29122-3|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6 nc|ENSG00000140479|P29122-3|PCSK6 nc|ENSG00000140479|P29122-3|PCSK6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2248229980469 2 437.224874 872.435195 0.19961 8.7275E-05 -0.13995 -6.1188E-05 0.059664 2.6087E-05 437.224781758843 24.241 0.40427 24.241 23.933 24.337 0 19 11 2 0 0 0 0.46882 1 4129 4129 21.537 4.5947 1 1306000 256 4304 167 167 254 254 -0.006125491761054036 AEADRVAAA 9 Unmodified _AEADRVAAA_ 0 0 0 nc|ENSG00000140479|P29122-3|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6 nc|ENSG00000140479|P29122-3|PCSK6 nc|ENSG00000140479|P29122-3|PCSK6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 437.224874 872.435195 -0.24337 -0.00010641 0.90439 0.00039542 0.66102 0.00028901 437.2251831684451 25.789 0.3128 23.866 23.741 24.053 -1.9222 -0.18745 0.0006403 NaN 21.537 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 528980 257 4304 167 167 -0.006125491761054036 AEAEAFLKKA 10 Unmodified _AEAEAFLKKA_ 0 0 0 ENST00000487114.1_1_1:36644989-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1 ENST00000487114.1_1_1:36644989-36645856:+|nuORF ENST00000487114.1_1_1:36644989-36645856:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2036437988281 3 359.86948 1076.58661 -0.27264 -9.8116E-05 0.26722 9.6165E-05 -0.0054214 -1.951E-06 359.86955852489035 60.282 0.61651 57.349 57.065 57.681 -2.9333 44 17 3 0 0 0 0.40561 2 11637 11567;11637 30.431 16.213 1 6111600 258 2958 168 168 255;256 256 0.05138012131783398 AEAEAFLKKA 10 Unmodified _AEAEAFLKKA_ 0 0 0 ENST00000487114.1_1_1:36644989-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1 ENST00000487114.1_1_1:36644989-36645856:+|nuORF ENST00000487114.1_1_1:36644989-36645856:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2037048339844 3 359.86948 1076.58661 0.093462 3.3634E-05 -0.11718 -4.2169E-05 -0.023718 -8.5353E-06 359.8694128739636 60.71 0.66109 57.396 57.05 57.711 -3.3139 52 18 4 0 0 0 0.6091 2 11338 11338;11367 18.721 12.938 1 4458800 259 2958 168 168 257;258 257 0.05138012131783398 AEAEAFLKKA 10 Unmodified _AEAEAFLKKA_ 0 0 0 ENST00000487114.1_1_1:36644989-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1 ENST00000487114.1_1_1:36644989-36645856:+|nuORF ENST00000487114.1_1_1:36644989-36645856:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2035827636719 3 359.86948 1076.58661 -0.52689 -0.00018961 0.67281 0.00024212 0.14591 5.2509E-05 359.869697989151 60.561 0.6029 57.338 57.063 57.666 -3.2237 43 16 3 0 0 0 0.73195 1 11384 11384 7.9454 3.0484 1 5078900 260 2958 168 168 259 259 0.05138012131783398 AEAEEGSTEG 10 Unmodified _AEAEEGSTEG_ 0 0 0 REV__ENSG00000106948|ENST00000374088|AKNA REV__ENSG00000106948|ENST00000374088|AKNA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2761535644531 2 490.196176 978.377799 0.14513 7.1141E-05 1.1986 0.00058754 1.3437 0.00065868 490.1966184262107 52.479 0.77041 49.391 49.025 49.796 -3.0876 27 21 2 0 0 0 0.75233 1 9698 9698 29.082 18.258 1 998270 + 261 15070 169 169 260 260 -0.11225480962980328 AEAEETRGRLA 11 Unmodified _AEAEETRGRLA_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000105357|Q7Z406-5|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2901611328125 2 601.809833 1201.60511 1.2004 0.0007224 -0.5649 -0.00033996 0.63549 0.00038244 601.8094979439387 19.861 0.34298 18.464 18.242 18.585 -1.3966 15 9 2 0 0 0 0.067475 1 3291 3291 83.278 37.538 1 2769900 262 2300 170 170 261 261 0.012375220356716454 AEAEETRGRLA 11 Unmodified _AEAEETRGRLA_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000105357|Q7Z406-5|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 601.809833 1201.60511 0.33667 0.00020261 -0.017133 -1.0311E-05 0.31953 0.0001923 601.8099502640455 18.384 0.28102 18.384 18.23 18.511 0 -0.043354 0.00011438 NaN 83.278 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 3009600 263 2300 170 170 0.012375220356716454 AEAEETRGRLA 11 Unmodified _AEAEETRGRLA_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000105357|Q7Z406-5|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 601.809833 1201.60511 0.058628 3.5283E-05 0.48523 0.00029201 0.54386 0.0003273 601.8101656397979 19.759 0.31236 18.433 18.247 18.559 -1.3251 0.0062363 0.00071903 NaN 83.278 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 4029600 264 2300 170 170 0.012375220356716454 AEAEFIRA 8 Unmodified _AEAEFIRA_ 0 0 0 nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172 nc|ENSG00000138002|Q9UG01-2|IFT172 nc|ENSG00000138002|Q9UG01-2|IFT172 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7647399902344 2 453.737617 905.460681 NaN NaN NaN NaN NaN NaN NaN 64.625 1 64.625 64.125 65.125 0 0 0 0 0.094179 1 12443 12443 45.7 9.5726 1 265 4136 171 171 262 262 0.004169253463260247 AEAEKIVN 8 Unmodified _AEAEKIVN_ 0 0 0 REV__ENST00000483315.1_1_21:33975401-33976611:-|nuORF REV__ENST00000483315.1_1_21:33975401-33976611:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2175598144531 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 62.181 1 58.942 58.442 59.442 -3.2395 0 0 0 0.21486 1 11654 11654 7.9102 0 1 + 266 17355 172 172 263 263 0.019015056264720442 AEAEKIVN 8 Unmodified _AEAEKIVN_ 0 0 0 REV__ENST00000483315.1_1_21:33975401-33976611:-|nuORF REV__ENST00000483315.1_1_21:33975401-33976611:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2154235839844 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.391 1 60.134 59.634 60.634 -3.2567 0 0 0 0.21486 1 11895 11895 9.3474 0 1 + 267 17355 172 172 264 264 0.019015056264720442 AEAEKQLGA 9 Unmodified _AEAEKQLGA_ 0 0 0 ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2 ENSG00000148341|ENST00000372564|SH3GLB2 ENSG00000148341|ENST00000372564|SH3GLB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2388916015625 2 458.740357 915.46616 -0.82308 -0.00037758 1.0399 0.00047703 0.21678 9.9446E-05 458.74076371923115 20.75 0.41662 19.029 18.836 19.253 -1.7211 25 11 3 0 0 0 0.065291 1 3189 3189 72.968 3.863 1 3171200 268 4739 173 173 265 265 0.005046041381433497 AEAEKQLQ 8 Unmodified _AEAEKQLQ_ 0 0 0 nc|ENSG00000168496|P39748-2|FEN1;ENSG00000168496|ENST00000305885|FEN1 nc|ENSG00000168496|P39748-2|FEN1 nc|ENSG00000168496|P39748-2|FEN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.24072265625 2 458.740357 915.46616 0.20976 9.6227E-05 0.00026994 1.2383E-07 0.21003 9.635E-05 458.7403547663262 19.283 0.55696 19.283 19.066 19.623 0 36 15 3 0 0 0 0.15175 1 3122 3122 88.954 0 1 12996000 269 5914 174 174 266 266 0.005046041381433497 AEAELETES 9 Unmodified _AEAELETES_ 0 0 0 ARMCX5|p.K45E|1|0.21|ENSG00000125962|chrX:102602274-102602274|A/G|missense_variant ARMCX5|p.K45E|1|0.21|ENSG00000125962|chrX:102602274-102602274|A/G|missense_variant ARMCX5|p.K45E|1|0.21|ENSG00000125962|chrX:102602274-102602274|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25897216796875 2 489.716744 977.418936 0.51754 0.00025345 0.57661 0.00028237 1.0941 0.00053582 489.71704086586175 30.885 0.70659 28.768 28.363 29.07 -2.1167 33 19 3 0 0 0 0.62102 1 5551 5551 11.64 0 1 1430800 270 223 175 175 267 267 -0.07067719923497862 AEAEPPSEV 9 Unmodified _AEAEPPSEV_ 0 0 0 nc|ENSG00000123737|Q06265-3|EXOSC9;nc|ENSG00000123737|Q06265-4|EXOSC9;ENST00000509980.5_1_4:122722579-122736524:+|nuORF;ENSG00000123737|ENST00000243498|EXOSC9;nc|ENSG00000123737|Q06265-2|EXOSC9;ENST00000513654.5_1_4:122731225-122735207:+|nuORF nc|ENSG00000123737|Q06265-3|EXOSC9 nc|ENSG00000123737|Q06265-3|EXOSC9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2411193847656 2 464.716547 927.418542 0.28682 0.00013329 -0.37708 -0.00017524 -0.090259 -4.1945E-05 464.71631489718726 39.974 1.3359 39.974 39.304 40.64 0 103 37 3 0 0 0 0.12755 1 7411 7411 31.728 22.815 1 10403000 271 3281 176 176 268 268 -0.048070948526969914 AEAEPPSEV 9 Unmodified _AEAEPPSEV_ 0 0 0 nc|ENSG00000123737|Q06265-3|EXOSC9;nc|ENSG00000123737|Q06265-4|EXOSC9;ENST00000509980.5_1_4:122722579-122736524:+|nuORF;ENSG00000123737|ENST00000243498|EXOSC9;nc|ENSG00000123737|Q06265-2|EXOSC9;ENST00000513654.5_1_4:122731225-122735207:+|nuORF nc|ENSG00000123737|Q06265-3|EXOSC9 nc|ENSG00000123737|Q06265-3|EXOSC9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 929.4296264648438 1 928.425818 927.418542 0.030899 2.8688E-05 0.19434 0.00018043 0.22524 0.00020912 928.4258378553058 42.614 1.3919 39.895 39.45 40.842 -2.7191 63 38 2 0 0 0 0.11717 1 7943 7943 49.933 13.806 1 6187000 272 3281 176 176 269 269 -0.048070948526969914 AEAEPPSEV 9 Unmodified _AEAEPPSEV_ 0 0 0 nc|ENSG00000123737|Q06265-3|EXOSC9;nc|ENSG00000123737|Q06265-4|EXOSC9;ENST00000509980.5_1_4:122722579-122736524:+|nuORF;ENSG00000123737|ENST00000243498|EXOSC9;nc|ENSG00000123737|Q06265-2|EXOSC9;ENST00000513654.5_1_4:122731225-122735207:+|nuORF nc|ENSG00000123737|Q06265-3|EXOSC9 nc|ENSG00000123737|Q06265-3|EXOSC9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2499694824219 2 464.716547 927.418542 -0.18545 -8.6184E-05 0.16403 7.6228E-05 -0.021424 -9.9562E-06 464.7165534067027 42.587 1.9117 39.868 39.277 41.189 -2.7191 124 53 3 0 0 0 0.027022 5 8008 8008;8157;8159;8170;8177 65.235 27.261 1 15092000 273 3281 176 176 270;271;272;273;274 270 -0.048070948526969914 AEAEPPSEV 9 Unmodified _AEAEPPSEV_ 0 0 0 nc|ENSG00000123737|Q06265-3|EXOSC9;nc|ENSG00000123737|Q06265-4|EXOSC9;ENST00000509980.5_1_4:122722579-122736524:+|nuORF;ENSG00000123737|ENST00000243498|EXOSC9;nc|ENSG00000123737|Q06265-2|EXOSC9;ENST00000513654.5_1_4:122731225-122735207:+|nuORF nc|ENSG00000123737|Q06265-3|EXOSC9 nc|ENSG00000123737|Q06265-3|EXOSC9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25048828125 2 464.716547 927.418542 -0.093273 -4.3346E-05 0.097756 4.5429E-05 0.0044828 2.0832E-06 464.7165215100851 42.632 1.8729 39.981 39.355 41.228 -2.651 119 52 3 0 0 0 0.01604 5 7759 7688;7708;7756;7759;7817 96.285 41.511 1 14166000 274 3281 176 176 275;276;277;278;279 278 -0.048070948526969914 AEAEPPSEV 9 Unmodified _AEAEPPSEV_ 0 0 0 nc|ENSG00000123737|Q06265-3|EXOSC9;nc|ENSG00000123737|Q06265-4|EXOSC9;ENST00000509980.5_1_4:122722579-122736524:+|nuORF;ENSG00000123737|ENST00000243498|EXOSC9;nc|ENSG00000123737|Q06265-2|EXOSC9;ENST00000513654.5_1_4:122731225-122735207:+|nuORF nc|ENSG00000123737|Q06265-3|EXOSC9 nc|ENSG00000123737|Q06265-3|EXOSC9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2397766113281 2 464.716547 927.418542 -0.0088999 -4.1359E-06 -0.99472 -0.00046226 -1.0036 -0.0004664 464.7164664592644 42.76 1.8951 40.154 39.36 41.255 -2.606 152 53 7 0 0 0 0.01604 5 7751 7679;7751;7781;7785;7867 96.285 41.511 1 10345000 275 3281 176 176 280;281;282;283;284 281 -0.048070948526969914 AEAEPPSEV 9 Unmodified _AEAEPPSEV_ 0 0 0 nc|ENSG00000123737|Q06265-3|EXOSC9;nc|ENSG00000123737|Q06265-4|EXOSC9;ENST00000509980.5_1_4:122722579-122736524:+|nuORF;ENSG00000123737|ENST00000243498|EXOSC9;nc|ENSG00000123737|Q06265-2|EXOSC9;ENST00000513654.5_1_4:122731225-122735207:+|nuORF nc|ENSG00000123737|Q06265-3|EXOSC9 nc|ENSG00000123737|Q06265-3|EXOSC9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 928.425818 927.418542 0.68008 0.00063141 -0.64807 -0.00060168 0.032015 2.9723E-05 928.4252151199871 39.83 1.266 39.83 39.409 40.675 0 -0.10482 -0.00055584 NaN 49.933 61 35 2 NaN NaN NaN NaN 0 NaN NaN 0 4873200 276 3281 176 176 -0.048070948526969914 AEAEPPSEV 9 Unmodified _AEAEPPSEV_ 0 0 0 nc|ENSG00000123737|Q06265-3|EXOSC9;nc|ENSG00000123737|Q06265-4|EXOSC9;ENST00000509980.5_1_4:122722579-122736524:+|nuORF;ENSG00000123737|ENST00000243498|EXOSC9;nc|ENSG00000123737|Q06265-2|EXOSC9;ENST00000513654.5_1_4:122731225-122735207:+|nuORF nc|ENSG00000123737|Q06265-3|EXOSC9 nc|ENSG00000123737|Q06265-3|EXOSC9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 928.425818 927.418542 0.181 0.00016804 0.16834 0.00015629 0.34934 0.00032434 928.4257952043201 42.691 1.3367 40.04 39.537 40.873 -2.651 0.10554 0.00020213 NaN 49.933 72 37 3 NaN NaN NaN NaN 0 NaN NaN 0 6805700 277 3281 176 176 -0.048070948526969914 AEAEQEEQL 9 Unmodified _AEAEQEEQL_ 0 0 0 nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6766967773438 2 523.735468 1045.45638 NaN NaN NaN NaN NaN NaN NaN 98.123 1 94.026 93.526 94.526 -4.0978 0 0 0 0.20628 1 19266 19266 21.747 1.293 1 278 12606 177 177 285 285 -0.06452628657893911 AEAERAPPAGL 11 Unmodified _AEAERAPPAGL_ 0 0 0 REV__ENSG00000073169|ENST00000380903|SELENOO REV__ENSG00000073169|ENST00000380903|SELENOO MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.274169921875 2 541.285463 1080.55637 0.40893 0.00022135 -0.95601 -0.00051747 -0.54708 -0.00029613 541.2848432514536 67.798 0.66586 64.472 64.172 64.838 -3.3268 22 18 2 0 0 0 0.45265 4 12777 12777;12780;12804;12833 24.021 5.8742 1 843040 + 279 14299 178 178 286;287;288;289 286 0.019316534665676954 AEAERLAL 8 Unmodified _AEAERLAL_ 0 0 0 REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2767231101948278|0.4573538105707593|1.48|479.0|1|1|sense REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2767231101948278|0.4573538105707593|1.48|479.0|1|1|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2189636230469 2 436.745442 871.476331 0.28556 0.00012472 -0.37387 -0.00016329 -0.088315 -3.8571E-05 436.74525322368225 74.828 0.84671 74.828 74.36 75.206 0 71 23 4 0 0 0 0.58432 1 14590 14590 23.148 0 1 21131000 + 280 13027 179 179 290 290 0.03545211863365694 AEAERQVL 8 Unmodified _AEAERQVL_ 0 0 0 REV__ENSG00000133454|ENST00000335473|MYO18B REV__ENSG00000133454|ENST00000335473|MYO18B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23388671875 2 458.248349 914.482145 0.27115 0.00012425 0.60116 0.00027548 0.87231 0.00039973 458.24830280608495 32.449 0.66179 32.449 32.188 32.85 0 28 18 2 0 0 0 0.0942 1 5879 5879 64.236 0 1 1518300 + 281 16167 180 180 291 291 0.021483103750597365 AEAERQVL 8 Unmodified _AEAERQVL_ 0 0 0 REV__ENSG00000133454|ENST00000335473|MYO18B REV__ENSG00000133454|ENST00000335473|MYO18B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2337951660156 2 458.248349 914.482145 0.13577 6.2217E-05 1.2587 0.00057678 1.3944 0.000639 458.2482553841402 34.546 0.55554 32.293 31.977 32.532 -2.2527 31 15 3 0 0 0 0.35341 1 6060 6060 34.402 0 1 1401200 + 282 16167 180 180 292 292 0.021483103750597365 AEAESGMAP 9 Unmodified _AEAESGMAP_ 0 0 0 nc|ENSG00000132153|Q7L2E3-2|DHX30 nc|ENSG00000132153|Q7L2E3-2|DHX30 nc|ENSG00000132153|Q7L2E3-2|DHX30 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 433.2067565917969 2 431.684193 861.353833 -0.18674 -8.0612E-05 1.1171 0.00048224 0.93038 0.00040163 431.68624301552916 65.121 1.2825 65.121 64.716 65.999 0 129 36 4 0 0 0 0.39168 1 12577 12577 0.87518 0 1 69800000 283 12324 181 181 293 293 -0.08238992930341738 AEAESMYQI 9 Unmodified _AEAESMYQI_ 0 0 0 CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8 CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8 CON__H-INV:HIT000292931 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2742919921875 2 521.231507 1040.44846 -0.025716 -1.3404E-05 -0.26224 -0.00013669 -0.28796 -0.00015009 521.2320492503211 93.167 2.6734 93.167 92.851 95.524 0 278 76 6 0 0 0 0.0083817 5 18377 18377;18396;18405;18426;18519 108 36.863 1 1559399999.9999998 + 284 647;658 182 182 294;295;296;297;298 294 -0.07014479179019872 AEAESMYQI 9 Unmodified _AEAESMYQI_ 0 0 0 CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8 CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8 CON__H-INV:HIT000292931 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2610473632812 2 521.231507 1040.44846 -0.19388 -0.00010106 -0.18791 -9.7947E-05 -0.3818 -0.000199 521.2322523751072 97.607 3.3041 93.509 93.081 96.385 -4.0978 309 94 6 0 0 0 0.0083817 3 19123 19123;19170;19383 108 36.863 1 1804499999.9999998 + 285 647;658 182 182 299;300;301 299 -0.07014479179019872 AEAESMYQI 9 Unmodified _AEAESMYQI_ 0 0 0 CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8 CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8 CON__H-INV:HIT000292931 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2807006835938 2 521.231507 1040.44846 -0.5397 -0.00028131 0.25956 0.00013529 -0.28014 -0.00014602 521.2324459128428 97.713 3.9529 93.479 93.055 97.008 -4.2348 355 114 6 0 0 0 0.095051 3 18893 18655;18713;18893 57.471 23.369 1 1729999999.9999998 + 286 647;658 182 182 302;303;304 304 -0.07014479179019872 AEAESMYQI 9 Unmodified _AEAESMYQI_ 0 0 0 CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8 CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8 CON__H-INV:HIT000292931 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2749633789062 2 521.231507 1040.44846 0.073714 3.8422E-05 -0.37602 -0.00019599 -0.30231 -0.00015757 521.2321637905452 97.439 3.529 93.519 92.987 96.517 -3.9194 311 102 6 0 0 0 0.071377 4 18860 18659;18860;18904;18910 64.236 24.279 1 1590799999.9999998 + 287 647;658 182 182 305;306;307;308 306 -0.07014479179019872 AEAETGGVRA 10 Unmodified _AEAETGGVRA_ 0 0 0 ENSG00000130487|ENST00000648057|KLHDC7B ENSG00000130487|ENST00000648057|KLHDC7B ENSG00000130487|ENST00000648057|KLHDC7B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23687744140625 2 480.740888 959.467223 0.15895 7.6416E-05 -0.18615 -8.9492E-05 -0.027201 -1.3077E-05 480.7406314698154 19.451 0.323 18.055 17.919 18.242 -1.3966 11 8 2 0 0 0 0.16303 1 3216 3216 71.708 13.029 1 2910300 288 3612 183 183 309 309 -0.014131814929442044 AEAFAKAKGS 10 Unmodified _AEAFAKAKGS_ 0 0 0 nc|ENSG00000166405|Q7Z5B4-5|RIC3;ENSG00000166405|ENST00000309737|RIC3;nc|ENSG00000166405|Q7Z5B4-2|RIC3;ENST00000529035.1_1_11:8157336-8161717:-|nuORF;nc|ENSG00000166405|Q7Z5B4-6|RIC3 nc|ENSG00000166405|Q7Z5B4-5|RIC3 nc|ENSG00000166405|Q7Z5B4-5|RIC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2652893066406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 56.027 1 52.851 52.351 53.351 -3.1761 0 0 0 2.8426 1 10415 10415 0.013265 0.013265 1 289 5719 184 184 310 310 0.02332883409144415 AEAFESQLSL 10 Unmodified _AEAFESQLSL_ 0 0 0 nc|ENSG00000154760|Q68D06-2|SLFN13;ENSG00000154760|ENST00000285013|SLFN13 nc|ENSG00000154760|Q68D06-2|SLFN13 nc|ENSG00000154760|Q68D06-2|SLFN13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7821044921875 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 68.616 1 65.226 64.726 65.726 -3.3903 0 0 0 0.22588 1 12957 12957 10.074 0 1 290 5024 185 185 311 311 -0.01386874864465426 AEAFGKIVA 9 Unmodified _AEAFGKIVA_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75982666015625 2 453.258185 904.501818 0.45675 0.00020703 -0.62118 -0.00028155 -0.16443 -7.4528E-05 453.25788993969496 82.82 1.2176 82.82 82.255 83.472 0 126 34 5 0 0 0 0.015957 4 16089 16089;16137;16183;16233 96.367 48.021 1 401000000 291 3631 186 186 312;313;314;315 312 0.04574686385797122 AEAFGKIVA 9 Unmodified _AEAFGKIVA_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.759521484375 2 453.258185 904.501818 -0.16181 -7.334E-05 0.066419 3.0105E-05 -0.095388 -4.3236E-05 453.2582353152437 86.295 1.3859 82.568 82.047 83.433 -3.727 147 38 5 0 0 0 0.037522 3 16922 16795;16922;16973 76.825 36.867 1 384410000 292 3631 186 186 316;317;318 317 0.04574686385797122 AEAFGKIVA 9 Unmodified _AEAFGKIVA_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7596740722656 2 453.258185 904.501818 0.22233 0.00010077 -0.40318 -0.00018275 -0.18085 -8.1972E-05 453.25803681101405 86.514 2.5673 82.563 81.976 84.543 -3.9503 180 72 5 0 0 0 0.015957 4 16431 16431;16520;16571;16576 96.367 48.021 1 345510000 293 3631 186 186 319;320;321;322 319 0.04574686385797122 AEAFGKIVA 9 Unmodified _AEAFGKIVA_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7596740722656 2 453.258185 904.501818 0.040061 1.8158E-05 -0.21328 -9.6672E-05 -0.17322 -7.8514E-05 453.2581148571095 86.339 2.0473 82.61 81.991 84.038 -3.7289 163 57 5 0 0 0 0.015957 4 16478 16426;16478;16567;16612 96.367 48.021 1 330260000 294 3631 186 186 323;324;325;326 324 0.04574686385797122 AEAFLAAG 8 Unmodified _AEAFLAAG_ 0 0 0 ENST00000472013.1_1_1:42922230-42922863:+|nuORF;PPCS|p.L132Qfs*58|1|0.35|ENSG00000127125|chr1:42456960-42456961|TG/-|frameshift_variant;ENSG00000127125|ENST00000372561|PPCS ENST00000472013.1_1_1:42922230-42922863:+|nuORF ENST00000472013.1_1_1:42922230-42922863:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2142028808594 2 375.195054 748.375555 NaN NaN NaN NaN NaN NaN NaN 30.625 1 30.625 30.125 31.125 0 0 0 0 0.22834 1 5508 5508 0.12286 0 1 295 10218 187 187 327 327 -0.008698201194647481 AEAFLKKL 8 Unmodified _AEAFLKKL_ 0 0 0 nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3 nc|ENSG00000182670|P53804-3|TTC3 nc|ENSG00000182670|P53804-3|TTC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.227783203125 2 460.284203 918.553853 -0.27579 -0.00012694 0.51257 0.00023593 0.23679 0.00010899 460.2843925662568 24.433 0.27445 22.579 22.435 22.71 -1.8534 12 7 2 0 0 0 0.752 1 3958 3958 9.3474 0 1 581450 296 6803 188 188 328 328 0.09131849799575775 AEAGALPAAA 10 Unmodified _AEAGALPAAA_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.726318359375 2 421.224342 840.434132 -0.35138 -0.00014801 0.46411 0.00019549 0.11273 4.7486E-05 421.2244921655241 54.048 0.80235 50.91 50.332 51.134 -3.1377 39 22 3 0 0 0 0.97086 1 10027 10027 21.75 7.1395 1 7034400 297 1695 189 189 329 329 0.007532364549888371 AEAGALPAAA 10 Unmodified _AEAGALPAAA_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 421.224342 840.434132 0.23151 9.7518E-05 -0.27371 -0.00011529 -0.042198 -1.7775E-05 421.2242067767417 50.942 0.66148 50.942 50.504 51.165 0 0.022834 -0.00034574 NaN 21.75 38 18 3 NaN NaN NaN NaN 0 NaN NaN 0 7456000 298 1695 189 189 0.007532364549888371 AEAGALPAAA 10 Unmodified _AEAGALPAAA_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 421.224342 840.434132 -0.38435 -0.0001619 0.30092 0.00012676 -0.083429 -3.5142E-05 421.2243953836413 53.718 0.69581 50.834 50.42 51.116 -2.8837 -0.085712 0.00013836 NaN 21.75 41 19 3 NaN NaN NaN NaN 0 NaN NaN 0 11574000 299 1695 189 189 0.007532364549888371 AEAGALPAAA 10 Unmodified _AEAGALPAAA_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 421.224342 840.434132 0.027901 1.1753E-05 0.067723 2.8527E-05 0.095624 4.0279E-05 421.2242537857683 54.127 0.58873 50.992 50.49 51.078 -3.1352 0.072579 -5.8099E-05 NaN 21.75 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 9394500 300 1695 189 189 0.007532364549888371 AEAGEWREP 9 Unmodified _AEAGEWREP_ 0 0 0 AluY_dup35561|chr6:33300685-33300983:+|1.1748435911146424|0.1243112229828391|3.24|479.0|11|3|sense;AluY_dup64372|chr11:882046-882337:+|1.6672929492750446|0.3489879065155246|2.26|478.0|3|1|sense AluY_dup35561|chr6:33300685-33300983:+|1.1748435911146424|0.1243112229828391|3.24|479.0|11|3|sense AluY_dup35561|chr6:33300685-33300983:+|1.1748435911146424|0.1243112229828391|3.24|479.0|11|3|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2664794921875 2 522.740888 1043.46722 0.43375 0.00022674 -0.74575 -0.00038983 -0.312 -0.00016309 522.7404662209703 49.459 0.52613 49.459 49.16 49.686 0 23 14 2 0 0 0 0.50174 1 9359 9359 40.725 15.326 1 2929600 301 140 190 190 330 330 -0.0527718149296561 AEAGEWREP 9 Unmodified _AEAGEWREP_ 0 0 0 AluY_dup35561|chr6:33300685-33300983:+|1.1748435911146424|0.1243112229828391|3.24|479.0|11|3|sense;AluY_dup64372|chr11:882046-882337:+|1.6672929492750446|0.3489879065155246|2.26|478.0|3|1|sense AluY_dup35561|chr6:33300685-33300983:+|1.1748435911146424|0.1243112229828391|3.24|479.0|11|3|sense AluY_dup35561|chr6:33300685-33300983:+|1.1748435911146424|0.1243112229828391|3.24|479.0|11|3|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2777709960938 2 522.740888 1043.46722 -0.00025248 -1.3198E-07 -0.88833 -0.00046437 -0.88859 -0.0004645 522.7408761521071 52.635 0.27769 49.54 49.378 49.656 -3.0954 16 7 3 0 0 0 0.42092 1 9722 9722 43.982 14.9 1 1700100 302 140 190 190 331 331 -0.0527718149296561 AEAGFRAPP 9 Unmodified _AEAGFRAPP_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2384948730469 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 44.352 1 44.352 43.852 44.852 0 0 0 0 0.21065 1 8319 8319 20.454 5.8719 1 303 7616 191 191 332 332 0.00036345066178000707 AEAGFRAPP 9 Unmodified _AEAGFRAPP_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23931884765625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 45.246 1 45.246 44.746 45.746 0 0 0 0 0.19721 1 8501 8501 24.021 2.2739 1 304 7616 191 191 333 333 0.00036345066178000707 AEAGFRAPP 9 Unmodified _AEAGFRAPP_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2388916015625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 45.482 1 45.482 44.982 45.982 0 0 0 0 0.1599 1 8550 8550 29.082 16.039 1 305 7616 191 191 334 334 0.00036345066178000707 AEAGFRAPP 9 Unmodified _AEAGFRAPP_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2385559082031 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 49.261 1 46.379 45.879 46.879 -2.8811 0 0 0 0.22962 1 9329 9329 14.838 1.3304 1 306 7616 191 191 335 335 0.00036345066178000707 AEAGFRAPP 9 Unmodified _AEAGFRAPP_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2242736816406 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 50.535 1 47.653 47.153 48.153 -2.8811 0 0 0 0.23508 1 9588 9588 11.64 0 1 307 7616 191 191 336 336 0.00036345066178000707 AEAGFRAPP 9 Unmodified _AEAGFRAPP_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2372131347656 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 77.601 1 74.138 73.638 74.638 -3.4633 0 0 0 0.13725 1 15151 15151 1.6919 1.0105 1 308 7616 191 191 337 337 0.00036345066178000707 AEAGFRAPP 9 Unmodified _AEAGFRAPP_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23876953125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 47.982 1 45.04 44.54 45.54 -2.9421 0 0 0 0.1599 1 8755 8755 29.082 5.061 1 309 7616 191 191 338 338 0.00036345066178000707 AEAGFRAPP 9 Unmodified _AEAGFRAPP_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2395324707031 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 48.333 1 45.391 44.891 45.891 -2.9421 0 0 0 0.21065 1 8822 8822 20.454 2.3186 1 310 7616 191 191 339 339 0.00036345066178000707 AEAGFRAPP 9 Unmodified _AEAGFRAPP_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2386169433594 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 48.392 1 45.442 44.942 45.942 -2.9499 0 0 0 0.10094 1 8857 8857 38.176 12.776 1 311 7616 191 191 340 340 0.00036345066178000707 AEAGFRAPP 9 Unmodified _AEAGFRAPP_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.238525390625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 48.64 1 45.691 45.191 46.191 -2.9499 0 0 0 0.1599 1 8906 8906 29.082 5.061 1 312 7616 191 191 341 341 0.00036345066178000707 AEAGFRAPP 9 Unmodified _AEAGFRAPP_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2382507324219 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 49.57 1 46.563 46.063 47.063 -3.0068 0 0 0 0.22621 1 9094 9094 15.847 2.3393 1 313 7616 191 191 342 342 0.00036345066178000707 AEAGFRAPP 9 Unmodified _AEAGFRAPP_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23822021484375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 78.674 1 74.998 74.498 75.498 -3.676 0 0 0 0.23508 1 14985 14985 7.9102 0 1 314 7616 191 191 343 343 0.00036345066178000707 AEAGGMHTV 9 Unmodified _AEAGGMHTV_ 0 0 0 ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1 ENSG00000180198|ENST00000683442|RCC1 ENSG00000180198|ENST00000683442|RCC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2252502441406 2 436.700177 871.385802 -0.24637 -0.00010759 0.049547 2.1637E-05 -0.19682 -8.5951E-05 436.7002314598406 25.79 0.69735 23.868 23.637 24.335 -1.9222 45 19 4 0 0 0 0.15889 1 4293 4293 30.703 12.33 1 25927000 315 6660 192 192 344 344 -0.05503580456536383 AEAGGMHTV 9 Unmodified _AEAGGMHTV_ 0 0 0 ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1 ENSG00000180198|ENST00000683442|RCC1 ENSG00000180198|ENST00000683442|RCC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.700177 871.385802 1.0589 0.00046241 -1.1888 -0.00051914 -0.12991 -5.6731E-05 436.6996917357411 25.702 1.1458 24.053 23.371 24.517 -1.6482 0.040708 -0.00059152 NaN 30.703 64 32 4 NaN NaN NaN NaN 0 NaN NaN 0 46038000 316 6660 192 192 -0.05503580456536383 AEAGKLLVV 9 Unmodified _AEAGKLLVV_ 0 0 0 nc|ENSG00000242515|Q9HAW8-2|UGT1A10;ENSG00000242515|ENST00000344644|UGT1A10;UGT1A8|p.H53Mfs*5|1|0.33|ENSG00000242366|chr2:233617859-233617859|G/-|frameshift_variant;UGT1A8|p.F117Lfs*17|1|0.28|ENSG00000242366|chr2:233618052-233618052|T/-|frameshift_variant;UGT1A10|p.I172Nfs*7|1|0.36|ENSG00000242515|chr2:233637030-233637031|-/G|frameshift_variant;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;ENSG00000242366|ENST00000373450|UGT1A8;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000241119|ENST00000354728|UGT1A9 nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9 nc|ENSG00000241119|O60656-2|UGT1A9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.28289794921875 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 52.52 1 49.636 49.136 50.136 -2.8837 0 0 0 0.23508 1 9996 9996 11.64 3.047 1 317 7867;7850 193 193 345 345 0.09543545936958253 AEAGMLEKL 9 Unmodified _AEAGMLEKL_ 0 0 0 ENST00000483775.1_1_7:151273415-151329218:-|nuORF;ENST00000491938.5_1_7:151269720-151329218:-|nuORF;PRKAG2|p.K291Rfs*7|1|0.58|ENSG00000106617|chr7:151576445-151576445|T/-|frameshift_variant;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2 ENST00000483775.1_1_7:151273415-151329218:-|nuORF ENST00000483775.1_1_7:151273415-151329218:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25384521484375 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 102.48 1 98.457 97.957 98.957 -4.0212 0 0 0 0.22962 1 19696 19696 14.838 0.93222 1 318 10420 194 194 346 346 0.013190054429401243 AEAGRRQNAA 10 Unmodified _AEAGRRQNAA_ 0 0 0 ENST00000333602.10_1_3:195615373-195635404:-|nuORF ENST00000333602.10_1_3:195615373-195635404:-|nuORF ENST00000333602.10_1_3:195615373-195635404:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2813720703125 2 522.270678 1042.5268 NaN NaN NaN NaN NaN NaN NaN 36.71 1 34.241 33.741 34.741 -2.4688 0 0 0 0.22588 1 6784 6784 6.2058 0.44535 1 319 8792 195 195 347 347 0.007241342410907237 AEAGRSPEV 9 Unmodified _AEAGRSPEV_ 0 0 0 ENST00000595094.1_1_19:20736613-20844252:-|nuORF;AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|1|1|sense;ENST00000498576.1_1_1:11137245-11137690:-|nuORF;ENST00000530527.5_1_11:17308195-17312910:+|nuORF;AluSp_dup42947|chr17:47950854-47951160:-|1.032795899586597|0.1918471209114514|2.43|482.0|5|2|sense;AluSx1_dup105715|chr19:17808831-17809133:-|1.057486810986726|0.069666496377167|3.92|481.0|1|1|sense ENST00000595094.1_1_19:20736613-20844252:-|nuORF ENST00000595094.1_1_19:20736613-20844252:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2303771972656 2 458.230156 914.445759 0.23693 0.00010857 0.41523 0.00019027 0.65217 0.00029884 458.2303358065298 20.392 0.53382 20.392 20.134 20.668 0 26 14 2 0 0 0 0.095704 2 3396 3392;3396 57.249 24.463 1 4422100 320 11657 196 196 348;349 349 -0.0148856652166387 AEAGRSPEV 9 Unmodified _AEAGRSPEV_ 0 0 0 ENST00000595094.1_1_19:20736613-20844252:-|nuORF;AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|1|1|sense;ENST00000498576.1_1_1:11137245-11137690:-|nuORF;ENST00000530527.5_1_11:17308195-17312910:+|nuORF;AluSp_dup42947|chr17:47950854-47951160:-|1.032795899586597|0.1918471209114514|2.43|482.0|5|2|sense;AluSx1_dup105715|chr19:17808831-17809133:-|1.057486810986726|0.069666496377167|3.92|481.0|1|1|sense ENST00000595094.1_1_19:20736613-20844252:-|nuORF ENST00000595094.1_1_19:20736613-20844252:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2302551269531 2 458.230156 914.445759 0.42672 0.00019553 -0.18962 -8.6888E-05 0.2371 0.00010865 458.2300430884407 21.749 0.50364 20.274 20.089 20.593 -1.4742 22 13 2 0 0 0 0.35556 2 3725 3725;3729 23.79 8.6536 1 3336100 321 11657 196 196 350;351 350 -0.0148856652166387 AEAGRSPEV 9 Unmodified _AEAGRSPEV_ 0 0 0 ENST00000595094.1_1_19:20736613-20844252:-|nuORF;AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|1|1|sense;ENST00000498576.1_1_1:11137245-11137690:-|nuORF;ENST00000530527.5_1_11:17308195-17312910:+|nuORF;AluSp_dup42947|chr17:47950854-47951160:-|1.032795899586597|0.1918471209114514|2.43|482.0|5|2|sense;AluSx1_dup105715|chr19:17808831-17809133:-|1.057486810986726|0.069666496377167|3.92|481.0|1|1|sense ENST00000595094.1_1_19:20736613-20844252:-|nuORF ENST00000595094.1_1_19:20736613-20844252:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23040771484375 2 458.230156 914.445759 -0.21896 -0.00010034 0.44789 0.00020524 0.22893 0.0001049 458.23033238578546 21.613 0.45533 20.228 20.072 20.527 -1.3847 23 12 2 0 0 0 0.13904 3 3445 3443;3445;3462 45.74 13.434 1 2670200 322 11657 196 196 352;353;354 353 -0.0148856652166387 AEAGRSPEV 9 Unmodified _AEAGRSPEV_ 0 0 0 ENST00000595094.1_1_19:20736613-20844252:-|nuORF;AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|1|1|sense;ENST00000498576.1_1_1:11137245-11137690:-|nuORF;ENST00000530527.5_1_11:17308195-17312910:+|nuORF;AluSp_dup42947|chr17:47950854-47951160:-|1.032795899586597|0.1918471209114514|2.43|482.0|5|2|sense;AluSx1_dup105715|chr19:17808831-17809133:-|1.057486810986726|0.069666496377167|3.92|481.0|1|1|sense ENST00000595094.1_1_19:20736613-20844252:-|nuORF ENST00000595094.1_1_19:20736613-20844252:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2315368652344 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 35.222 1 32.969 32.469 33.469 -2.2527 0 0 0 0.19674 1 6200 6200 0.12781 0.096405 1 323 11657 196 196 355 355 -0.0148856652166387 AEAGSGHMN 9 Unmodified _AEAGSGHMN_ 0 0 0 ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B ENSG00000119318|ENST00000358015|RAD23B ENSG00000119318|ENST00000358015|RAD23B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21661376953125 2 437.179609 872.344665 NaN NaN NaN NaN NaN NaN NaN 94.703 1 90.822 90.322 91.322 -3.881 0 0 0 0.23508 1 18172 18172 7.2892 2.0586 1 324 3068 197 197 356 356 -0.09661341496018849 AEAGSGWRA 9 Unmodified _AEAGSGWRA_ 0 0 0 ENST00000285518.10_1_8:6565940-6566105:+|nuORF ENST00000285518.10_1_8:6565940-6566105:+|nuORF ENST00000285518.10_1_8:6565940-6566105:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7669982910156 2 452.717216 903.419879 0.36813 0.00016666 -0.83985 -0.00038021 -0.47171 -0.00021355 452.7168333034884 33.228 0.68491 31.012 30.704 31.389 -2.2158 48 19 4 0 0 0 0.41266 1 5778 5778 24.991 4.1198 1 3770700 325 8457 198 198 357 357 -0.035694159732884145 AEAGSGWRA 9 Unmodified _AEAGSGWRA_ 0 0 0 ENST00000285518.10_1_8:6565940-6566105:+|nuORF ENST00000285518.10_1_8:6565940-6566105:+|nuORF ENST00000285518.10_1_8:6565940-6566105:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 452.717216 903.419879 0.26838 0.0001215 -0.69355 -0.00031398 -0.42517 -0.00019248 452.71683900717136 31.09 0.87787 31.09 30.793 31.671 0 0.07198 -3.2123E-05 NaN 24.991 36 24 2 NaN NaN NaN NaN 0 NaN NaN 0 6572200 326 8457 198 198 -0.035694159732884145 AEAGSGWRA 9 Unmodified _AEAGSGWRA_ 0 0 0 ENST00000285518.10_1_8:6565940-6566105:+|nuORF ENST00000285518.10_1_8:6565940-6566105:+|nuORF ENST00000285518.10_1_8:6565940-6566105:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 452.717216 903.419879 -0.083719 -3.7901E-05 -0.51334 -0.0002324 -0.59706 -0.0002703 452.7169831938453 33.311 0.73125 30.993 30.627 31.358 -2.3175 -0.024965 0.00013104 NaN 24.991 49 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5387300 327 8457 198 198 -0.035694159732884145 AEAGSGWRA 9 Unmodified _AEAGSGWRA_ 0 0 0 ENST00000285518.10_1_8:6565940-6566105:+|nuORF ENST00000285518.10_1_8:6565940-6566105:+|nuORF ENST00000285518.10_1_8:6565940-6566105:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 452.717216 903.419879 0.18421 8.3397E-05 -0.58357 -0.00026419 -0.39936 -0.0001808 452.716897693326 33.124 0.91165 30.977 30.688 31.6 -2.1468 -0.041294 6.7455E-05 NaN 24.991 55 25 4 NaN NaN NaN NaN 0 NaN NaN 0 5407200 328 8457 198 198 -0.035694159732884145 AEAGVGSSDAG 11 Unmodified _AEAGVGSSDAG_ 0 0 0 REV__ENSG00000123472|ENST00000574428|ATPAF1 REV__ENSG00000123472|ENST00000574428|ATPAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2340087890625 2 460.701429 919.388304 0.53906 0.00024835 0.77761 0.00035825 1.3167 0.00060659 460.70172401618555 45.934 1.0761 45.934 45.483 46.559 0 70 30 3 0 0 0 0.31616 2 8624 8624;8672 60.074 14.374 1 31669000 + 329 15731 199 199 358;359 358 -0.07461453517896643 AEAGVGSSDAG 11 Unmodified _AEAGVGSSDAG_ 0 0 0 REV__ENSG00000123472|ENST00000574428|ATPAF1 REV__ENSG00000123472|ENST00000574428|ATPAF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2291564941406 2 460.701429 919.388304 0.53906 0.00024835 0.77761 0.00035825 1.3167 0.00060659 460.70172401618555 45.934 1.0761 45.934 45.483 46.559 0 70 30 3 0 0 0 0.24291 1 8672 8672 60.074 22.1 1 31669000 + 330 15731 199 199 360 360 -0.07461453517896643 AEAGVGSSDAG 11 Unmodified _AEAGVGSSDAG_ 0 0 0 REV__ENSG00000123472|ENST00000574428|ATPAF1 REV__ENSG00000123472|ENST00000574428|ATPAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2299499511719 2 460.701429 919.388304 -0.18264 -8.4145E-05 1.0921 0.00050311 0.90941 0.00041897 460.701850076107 48.893 1.0815 46.024 45.693 46.775 -2.869 81 30 4 0 0 0 0.31616 1 9288 9288 60.074 18.234 1 45362000 + 331 15731 199 199 361 361 -0.07461453517896643 AEAGVGSSDAG 11 Unmodified _AEAGVGSSDAG_ 0 0 0 REV__ENSG00000123472|ENST00000574428|ATPAF1 REV__ENSG00000123472|ENST00000574428|ATPAF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2404479980469 2 460.701429 919.388304 -0.18264 -8.4145E-05 1.0921 0.00050311 0.90941 0.00041897 460.701850076107 48.893 1.0815 46.024 45.693 46.775 -2.869 81 30 4 0 0 0 0.71831 1 9318 9318 29.841 9.387 1 45362000 + 332 15731 199 199 362 362 -0.07461453517896643 AEAHRIQQI 9 Unmodified _AEAHRIQQI_ 0 0 0 ENSG00000132589|ENST00000394908|FLOT2;ENST00000577789.5_1_17:27207581-27224656:-|nuORF;FLOT2|p.A301V|1|0.46|ENSG00000132589|chr17:28881826-28881826|G/A|missense_variant ENSG00000132589|ENST00000394908|FLOT2 ENSG00000132589|ENST00000394908|FLOT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2865600585938 2 533.293622 1064.57269 NaN NaN NaN NaN NaN NaN NaN 51.409 1 48.364 47.864 48.864 -3.0453 0 0 0 0.23508 1 9440 9440 11.64 3.4848 1 333 3744 200 200 363 363 0.04298779423334054 AEAHRKREKAI 11 Unmodified _AEAHRKREKAI_ 0 0 0 ENST00000437325.2_1_1:235901419-235901638:+|nuORF ENST00000437325.2_1_1:235901419-235901638:+|nuORF ENST00000437325.2_1_1:235901419-235901638:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22796630859375 3 436.921349 1307.74222 0.21081 9.2106E-05 0.96171 0.00042019 1.1725 0.0005123 437.2558652865725 28.196 0.44679 28.196 27.905 28.352 0 15 12 2 0 0 0 0.806 1 5002 5002 2.8433 0.21205 1 686780 334 9849 201 201 364 364 0.1006547570591465 AEAIELAKA 9 Unmodified _AEAIELAKA_ 0 0 0 REV__ENST00000400984.2_1_1:161375932-161376085:+|nuORF REV__ENST00000400984.2_1_1:161375932-161376085:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2384338378906 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 87.556 1 83.829 83.329 84.329 -3.727 0 0 0 0.22621 1 17123 17123 15.847 0 1 + 335 21354 202 202 365 365 0.04662365177625816 AEAIKAMNN 9 Unmodified _AEAIKAMNN_ 0 0 0 REV__ENSG00000167414|ENST00000693335|GNG8 REV__ENSG00000167414|ENST00000693335|GNG8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24029541015625 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 47.534 1 44.665 44.165 45.165 -2.869 0 0 0 0.21844 1 8981 8981 18.146 1.2041 1 + 336 17925 203 203 366 366 -0.011950493596486922 AEAIKAWTA 9 Unmodified _AEAIKAWTA_ 0 0 0 ENST00000565493.1_1_20:34638316-34638640:-|nuORF ENST00000565493.1_1_20:34638316-34638640:-|nuORF ENST00000565493.1_1_20:34638316-34638640:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2406311035156 2 480.761092 959.507631 -0.011207 -5.3877E-06 0.31149 0.00014975 0.30028 0.00014436 480.7612743905078 75.85 0.95548 72.435 72.12 73.075 -3.4151 65 26 3 0 0 0 0.14836 1 14824 14824 63.227 26.721 1 44592000 337 11358 204 204 367 367 0.026257848974523768 AEAIKAWTA 9 Unmodified _AEAIKAWTA_ 0 0 0 ENST00000565493.1_1_20:34638316-34638640:-|nuORF ENST00000565493.1_1_20:34638316-34638640:-|nuORF ENST00000565493.1_1_20:34638316-34638640:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24627685546875 2 480.761092 959.507631 0.14975 7.1996E-05 0.1589 7.6392E-05 0.30865 0.00014839 480.76118200887794 76.091 1.2172 72.457 72.1 73.317 -3.6337 73 34 3 0 0 0 0.075017 1 14491 14491 63.227 30.922 1 44841000 338 11358 204 204 368 368 0.026257848974523768 AEAILGQNAA 10 Unmodified _AEAILGQNAA_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7393493652344 2 479.253631 956.49271 -0.36459 -0.00017473 0.32207 0.00015435 -0.042521 -2.0378E-05 479.25376760936035 61.852 1.1954 61.852 61.463 62.659 0 109 34 4 0 0 0 0.00037565 1 11909 11909 129.77 72.05 1 134230000 339 3722 205 205 369 369 0.012722930294785328 AEAILGQNAA 10 Unmodified _AEAILGQNAA_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73760986328125 2 479.253631 956.49271 0.037675 1.8056E-05 -0.086823 -4.161E-05 -0.049149 -2.3555E-05 479.2535934313448 64.929 1.5008 61.882 61.276 62.776 -3.047 121 43 4 0 0 0 3.6852E-12 1 12557 12557 125.53 69.352 1 171920000 340 3722 205 205 370 370 0.012722930294785328 AEAILGQNAA 10 Unmodified _AEAILGQNAA_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73944091796875 2 479.253631 956.49271 0.23566 0.00011294 -0.22429 -0.00010749 0.01137 5.449E-06 479.25352256976663 65.361 1.4291 61.903 61.404 62.833 -3.4581 117 40 4 0 0 0 4.1135E-20 1 12239 12239 157.8 105.53 1 155060000 341 3722 205 205 371 371 0.012722930294785328 AEAILGQNAA 10 Unmodified _AEAILGQNAA_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7286682128906 2 479.253631 956.49271 0.28532 0.00013674 -0.26035 -0.00012477 0.024976 1.197E-05 479.25350239548993 65.193 1.5079 61.909 61.35 62.858 -3.2832 126 43 4 0 0 0 0.26842 1 12174 12174 75.761 45.124 1 152680000 342 3722 205 205 372 372 0.012722930294785328 AEAISGPGVGV 11 Unmodified _AEAISGPGVGV_ 0 0 0 REV__ENST00000565137.1_1_16:31498819-31499703:-|nuORF REV__ENST00000565137.1_1_16:31498819-31499703:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7237243652344 2 478.756007 955.497461 0.37454 0.00017931 -0.7241 -0.00034667 -0.34956 -0.00016736 478.7559763648717 89.888 0.7113 85.844 85.417 86.128 -4.0443 42 19 3 0 0 0 0.89764 1 17074 17074 12.241 1.4167 1 3325400 + 343 23105 206 206 373 373 0.017931771722601297 AEAKAQIEA 9 Unmodified _AEAKAQIEA_ 0 0 0 ENSG00000159618|ENST00000349457|ADGRG5 ENSG00000159618|ENST00000349457|ADGRG5 ENSG00000159618|ENST00000349457|ADGRG5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25860595703125 2 465.748182 929.481811 0.98978 0.00046099 -1.1812 -0.00055015 -0.19144 -8.9161E-05 465.74770751425524 24.838 0.37837 23.19 22.959 23.337 -1.6482 15 10 2 0 0 0 0.72134 1 4336 4336 27.223 4.487 1 543990 344 5213 207 207 374 374 0.014248906551870277 AEAKEYVIKA 10 Unmodified _AEAKEYVIKA_ 0 0 0 SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant;ENSG00000109111|ENST00000314616|SUPT6H SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2135314941406 3 374.544885 1120.61282 0.076398 2.8614E-05 -0.22923 -8.5856E-05 -0.15283 -5.7241E-05 374.5447832844722 43.139 0.5494 43.139 42.883 43.433 0 47 15 4 0 0 0 0.00010755 2 8095 8095;8096 103.82 58.124 1 8968900 345 2517 208 208 375;376 375 0.05734281303239186 AEAKEYVIKA 10 Unmodified _AEAKEYVIKA_ 0 0 0 SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant;ENSG00000109111|ENST00000314616|SUPT6H SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2133483886719 3 374.544885 1120.61282 -0.25335 -9.4892E-05 0.16479 6.172E-05 -0.088567 -3.3172E-05 374.5448967450418 45.936 0.65781 43.095 42.758 43.415 -2.8409 55 18 4 0 0 0 0.00010755 4 8669 8622;8669;8672;8679 131.66 72.61 1 11798000 346 2517 208 208 377;378;379;380 378 0.05734281303239186 AEAKEYVIKA 10 Unmodified _AEAKEYVIKA_ 0 0 0 SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant;ENSG00000109111|ENST00000314616|SUPT6H SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2133483886719 3 374.544885 1120.61282 -0.011279 -4.2246E-06 -0.17804 -6.6685E-05 -0.18932 -7.0909E-05 374.54478156961113 45.994 0.62066 43.129 42.83 43.45 -2.8653 56 17 4 0 0 0 0.0026212 3 8366 8326;8366;8370 131.66 64.581 1 13312000 347 2517 208 208 381;382;383 382 0.05734281303239186 AEAKEYVIKA 10 Unmodified _AEAKEYVIKA_ 0 0 0 SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant;ENSG00000109111|ENST00000314616|SUPT6H SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2133483886719 3 374.544885 1120.61282 -0.78861 -0.00029537 0.67661 0.00025342 -0.11199 -4.1947E-05 374.5450817244528 45.943 0.69399 43.077 42.747 43.441 -2.8666 56 19 4 0 0 0 0.0026212 2 8358 8358;8361 106.39 54.899 1 7473600 348 2517 208 208 384;385 384 0.05734281303239186 AEAKGNEVRP 10 Unmodified _AEAKGNEVRP_ 0 0 0 nc|ENSG00000100219|P17861|XBP1;ENSG00000100219|ENST00000344347|XBP1 nc|ENSG00000100219|P17861|XBP1 nc|ENSG00000100219|P17861|XBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.55242919921875 3 357.524484 1069.55162 -0.36645 -0.00013102 0.1194 4.2687E-05 -0.24706 -8.8329E-05 357.5246096713339 14.702 0.4225 14.702 14.491 14.914 0 24 11 3 0 0 0 0.64984 1 2222 2222 16.275 11.227 1 1320000 349 1937 209 209 386 386 0.01962769323813518 AEAKGRPGS 9 Unmodified _AEAKGRPGS_ 0 0 0 ENST00000571543.1_1_17:1131443-1132291:-|nuORF ENST00000571543.1_1_17:1131443-1132291:-|nuORF ENST00000571543.1_1_17:1131443-1132291:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23468017578125 2 436.732866 871.451179 0.40576 0.00017721 0.32434 0.00014165 0.7301 0.00031886 436.7326379495933 21.842 0.4649 20.368 20.195 20.66 -1.4742 19 12 2 0 0 0 0.086396 1 3704 3704 60.074 22.1 1 1142000 350 11422 210 210 387 387 0.010311570608109832 AEAKGRPGS 9 Unmodified _AEAKGRPGS_ 0 0 0 ENST00000571543.1_1_17:1131443-1132291:-|nuORF ENST00000571543.1_1_17:1131443-1132291:-|nuORF ENST00000571543.1_1_17:1131443-1132291:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2336730957031 2 436.732866 871.451179 -0.19894 -8.6882E-05 1.0905 0.00047628 0.89161 0.0003894 436.73297277204705 21.741 0.45293 20.356 20.211 20.664 -1.3847 19 12 2 0 0 0 0.10573 1 3428 3428 53.833 11.877 1 858770 351 11422 210 210 388 388 0.010311570608109832 AEAKGRPGS 9 Unmodified _AEAKGRPGS_ 0 0 0 ENST00000571543.1_1_17:1131443-1132291:-|nuORF ENST00000571543.1_1_17:1131443-1132291:-|nuORF ENST00000571543.1_1_17:1131443-1132291:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 436.732866 871.451179 0.14125 6.1688E-05 0.5717 0.00024968 0.71295 0.00031137 436.73287743116816 20.482 0.42862 20.482 20.313 20.742 0 0.11253 -0.00025219 NaN 60.074 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1508800 352 11422 210 210 0.010311570608109832 AEAKQTLI 8 Unmodified _AEAKQTLI_ 0 0 0 ENSG00000145332|ENST00000273963|KLHL8 ENSG00000145332|ENST00000273963|KLHL8 ENSG00000145332|ENST00000273963|KLHL8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2164001464844 2 437.255643 872.496732 -0.098469 -4.3056E-05 -0.022638 -9.8984E-06 -0.12111 -5.2955E-05 437.25557526894727 79.468 0.52764 75.663 75.336 75.864 -3.8048 24 14 2 0 0 0 0.2118 1 15063 15063 44.407 2.3125 1 2416100 353 4602 211 211 389 389 0.05538382523195651 AEAKTEAPC 9 Unmodified _AEAKTEAPC_ 0 0 0 REV__nc|ENSG00000100344|Q9NST1-2|PNPLA3 REV__nc|ENSG00000100344|Q9NST1-2|PNPLA3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2303466796875 2 460.213117 918.411682 NaN NaN NaN NaN NaN NaN NaN 35.796 1 35.796 35.296 36.296 0 0 0 0 0.22962 1 6582 6582 14.838 1.3304 1 + 354 14694 212 212 390 390 -0.050787310049372536 AEAKWTAP 8 Unmodified _AEAKWTAP_ 0 0 0 REV__AluSp_dup42947|chr17:47950854-47951160:-|1.032795899586597|0.1918471209114514|2.43|482.0|3|1|sense REV__AluSp_dup42947|chr17:47950854-47951160:-|1.032795899586597|0.1918471209114514|2.43|482.0|3|1|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2193908691406 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 20.959 1 20.959 20.459 21.459 0 0 0 0 0.21486 1 3489 3489 11.64 0.52583 1 + 355 13026 213 213 391 391 -0.0021045968238695423 AEALAALEAA 10 Unmodified _AEALAALEAA_ 0 0 0 ENSG00000154274|ENST00000381980|C4orf19 ENSG00000154274|ENST00000381980|C4orf19 ENSG00000154274|ENST00000381980|C4orf19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2502746582031 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 24.098 1 24.098 23.598 24.598 0 0 0 0 0.15474 1 4137 4137 36.127 8.4982 1 356 5005 214 214 392 392 0.019457747979458873 AEALAQISA 9 Unmodified _AEALAQISA_ 0 0 0 nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-3|TRIM3;ENSG00000110171|ENST00000345851|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3 nc|ENSG00000110171|O75382-4|TRIM3 nc|ENSG00000110171|O75382-4|TRIM3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2168884277344 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 81.778 1 77.939 77.439 78.439 -3.8392 0 0 0 0.21844 1 15528 15528 18.146 1.2041 1 357 2568 215 215 393 393 0.01901505626483413 AEALELARG 9 Unmodified _AEALELARG_ 0 0 0 REV__ENSG00000253368|ENST00000522111|TRNP1 REV__ENSG00000253368|ENST00000522111|TRNP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25628662109375 2 465.256174 928.497795 0.34697 0.00016143 -0.46247 -0.00021517 -0.1155 -5.3737E-05 465.2559334161572 42.386 0.59082 42.386 42.048 42.639 0 36 16 3 0 0 0 0.34411 1 7970 7970 29.082 6.3453 1 3134300 + 358 19835 216 216 394 394 0.030685968921034146 AEALGRLVK 9 Unmodified _AEALGRLVK_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145484984-145485693:+|nuORF ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7261047363281 2 478.798009 955.581465 NaN NaN NaN NaN NaN NaN NaN 66.037 1 62.99 62.49 63.49 -3.047 0 0 0 0.23508 1 12788 12788 7.2892 0.56607 1 359 6645 217 217 395 395 0.10189753059808027 AEALGSTEA 9 Unmodified _AEALGSTEA_ 0 0 0 ENST00000544802.5_1_7:72593260-72619478:+|nuORF;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I ENST00000544802.5_1_7:72593260-72619478:+|nuORF ENST00000544802.5_1_7:72593260-72619478:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2512512207031 2 424.70344 847.392327 0.11239 4.7733E-05 0.14029 5.9581E-05 0.25268 0.00010731 424.7034642641495 31.774 1.0583 29.544 29.059 30.117 -2.2305 79 29 4 0 0 0 0.0093041 1 5799 5799 60.47 51.504 1 28203000 360 7970 218 218 396 396 -0.03747364024172839 AEALGSTEA 9 Unmodified _AEALGSTEA_ 0 0 0 ENST00000544802.5_1_7:72593260-72619478:+|nuORF;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I ENST00000544802.5_1_7:72593260-72619478:+|nuORF ENST00000544802.5_1_7:72593260-72619478:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2513732910156 2 424.70344 847.392327 0.20382 8.6563E-05 -0.28806 -0.00012234 -0.08424 -3.5777E-05 424.70342392512026 31.78 1.3287 29.632 28.987 30.316 -2.1483 95 37 4 0 0 0 0.068006 1 5483 5483 42.232 39.35 1 10935000 361 7970 218 218 397 397 -0.03747364024172839 AEALGSTEA 9 Unmodified _AEALGSTEA_ 0 0 0 ENST00000544802.5_1_7:72593260-72619478:+|nuORF;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I ENST00000544802.5_1_7:72593260-72619478:+|nuORF ENST00000544802.5_1_7:72593260-72619478:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 424.70344 847.392327 0.13151 5.5855E-05 0.17188 7.2999E-05 0.3034 0.00012885 424.70347295335483 29.875 1.228 29.875 29.398 30.626 0 0.21119 7.6177E-05 NaN 60.47 92 34 4 NaN NaN NaN NaN 0 NaN NaN 0 33218000 362 7970 218 218 -0.03747364024172839 AEALIKHKP 9 Unmodified _AEALIKHKP_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.1797180175781 3 336.206315 1005.59712 -0.28325 -9.5231E-05 0.29665 9.9736E-05 0.013401 4.5054E-06 336.2068014636484 19.794 3.3874 18.469 18.037 21.425 -1.3251 229 96 6 0 0 0 0.54058 1 3557 3557 12.241 12.232 1 691940000 363 4668 219 219 398 398 0.09454039576849027 AEALIKHKP 9 Unmodified _AEALIKHKP_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 336.206315 1005.59712 -0.45299 -0.0001523 0.44586 0.0001499 -0.0071276 -2.3964E-06 336.20685903938653 18.454 2.0113 18.454 17.987 19.998 0 -0.05704 -0.0001499 NaN 12.241 173 57 6 NaN NaN NaN NaN 0 NaN NaN 0 641610000 364 4668 219 219 0.09454039576849027 AEALIKHKP 9 Unmodified _AEALIKHKP_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 336.206315 1005.59712 -0.065404 -2.1989E-05 0.1082 3.6376E-05 0.042792 1.4387E-05 336.20669883336194 19.965 2.5305 18.568 18.066 20.597 -1.3966 0.056864 -0.00049048 NaN 12.241 162 71 6 NaN NaN NaN NaN 0 NaN NaN 0 520620000 365 4668 219 219 0.09454039576849027 AEALIRPQ 8 Unmodified _AEALIRPQ_ 0 0 0 REV__ENST00000361524.7_1_18:22805794-22805878:-|nuORF REV__ENST00000361524.7_1_18:22805794-22805878:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.1220703125 2 449.261259 896.507966 -0.44297 -0.00019901 0.42633 0.00019153 -0.016643 -7.477E-06 449.26143868251063 18.175 0.26593 16.902 16.73 16.996 -1.2722 12 7 2 0 0 0 0.98792 1 2681 2681 5.2307 0 1 474440 + 366 20883 220 220 399 399 0.05557204617332445 AEALKAPQS 9 Unmodified _AEALKAPQS_ 0 0 0 REV__ENST00000522665.5_1_8:134254200-134261004:-|nuORF REV__ENST00000522665.5_1_8:134254200-134261004:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2240295410156 2 457.750724 913.486896 0.26139 0.00011965 0.30272 0.00013857 0.56412 0.00025822 457.7508018394107 21.536 0.67945 21.536 21.265 21.945 0 49 19 4 0 0 0 0.31673 1 3639 3639 26.268 0 1 11429000 + 367 14921 221 221 400 400 0.026691945178072274 AEALKAPQS 9 Unmodified _AEALKAPQS_ 0 0 0 REV__ENST00000522665.5_1_8:134254200-134261004:-|nuORF REV__ENST00000522665.5_1_8:134254200-134261004:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2302551269531 2 457.750724 913.486896 -0.45902 -0.00021012 0.91697 0.00041974 0.45795 0.00020963 457.7510738398689 23.242 1.0931 21.453 20.643 21.736 -1.7886 57 31 4 0 0 0 0.32263 1 3752 3752 37.974 0 1 8155100 + 368 14921 221 221 401 401 0.026691945178072274 AEALNQEF 8 Unmodified _AEALNQEF_ 0 0 0 ENSG00000135406|ENST00000257860|PRPH;nc|ENSG00000135406|P41219-2|PRPH ENSG00000135406|ENST00000257860|PRPH ENSG00000135406|ENST00000257860|PRPH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.9039001464844 2 461.219257 920.423961 -0.23757 -0.00010957 0.45475 0.00020974 0.21718 0.00010017 461.2193395898025 113.33 0.68632 108.88 108.36 109.04 -4.4538 29 18 2 0 0 0 0.89147 1 22231 22231 0.62683 0 1 1106700 369 3924 222 222 402 402 -0.03943371270224816 AEALPQQY 8 Unmodified _AEALPQQY_ 0 0 0 IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant;ENSG00000170604|ENST00000302165|IRF2BP1 IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2318420410156 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 108.33 1 104.01 103.51 104.51 -4.32 0 0 0 0.20896 1 21343 21343 18.135 3.5533 1 370 6083 223 223 403 403 -0.017787808905723068 AEALQQIAA 9 Unmodified _AEALQQIAA_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2405090332031 2 457.750724 913.486896 0.26139 0.00011965 0.30272 0.00013857 0.56412 0.00025822 457.7508018394107 21.536 0.67945 21.536 21.265 21.945 0 49 19 4 0 0 0 0.42844 1 3559 3559 24.021 1.2843 1 11429000 + 371 14524 224 224 404 404 0.026691945178072274 AEALQQIAA 9 Unmodified _AEALQQIAA_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386474609375 2 457.750724 913.486896 0.56207 0.00025729 -0.27767 -0.0001271 0.2844 0.00013018 457.7505550794803 77.203 0.97665 77.203 76.658 77.634 0 65 27 3 0 0 0 0.010349 4 14989 14984;14989;15006;15040 103.75 7.6374 1 15229000 + 372 14524 224 224 405;406;407;408 406 0.026691945178072274 AEALRALGER 10 Unmodified _AEALRALGER_ 0 0 0 REV__nc|ENSG00000051128|Q9NSC5-2|HOMER3 REV__nc|ENSG00000051128|Q9NSC5-2|HOMER3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77685546875 2 543.306729 1084.59891 0.37544 0.00020398 -0.22354 -0.00012145 0.1519 8.2527E-05 543.3067704435973 29.076 0.4191 29.076 28.81 29.229 0 24 11 4 0 0 0 0.53695 1 5171 5171 22.658 2.2436 1 2524600 + 373 23939 225 225 409 409 0.059990485947992056 AEALRLKK 8 Unmodified _AEALRLKK_ 0 0 0 nc|ENSG00000002079|Q9H6N6|MYH16 nc|ENSG00000002079|Q9H6N6|MYH16 nc|ENSG00000002079|Q9H6N6|MYH16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16485595703125 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 15.341 1 15.341 14.841 15.841 0 0 0 0 0.23626 1 2332 2332 0.30703 0 1 374 12202 226 226 410 410 0.11986056922410171 AEALRLKK 8 Unmodified _AEALRLKK_ 0 0 0 nc|ENSG00000002079|Q9H6N6|MYH16 nc|ENSG00000002079|Q9H6N6|MYH16 nc|ENSG00000002079|Q9H6N6|MYH16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.160888671875 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 15.413 1 15.413 14.913 15.913 0 0 0 0 0.23626 1 2345 2345 0.30703 0 1 375 12202 226 226 411 411 0.11986056922410171 AEALTLTSNY 10 Unmodified _AEALTLTSNY_ 0 0 0 REV__ENSG00000171811|ENST00000368586|CFAP46 REV__ENSG00000171811|ENST00000368586|CFAP46 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2591552734375 2 541.771854 1081.52915 0.32841 0.00017792 -0.59204 -0.00032075 -0.26363 -0.00014283 541.7714665942669 124.46 0.68295 119.85 119.53 120.21 -4.6125 24 18 2 0 0 0 0.87854 1 23895 23895 13.906 8.6092 1 1306100 + 376 18251 227 227 412 412 -0.0083487486449485 AEALYHSKY 9 Unmodified _AEALYHSKY_ 0 0 0 KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908 KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.281494140625 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 44.193 1 41.427 40.927 41.927 -2.7661 0 0 0 0.21844 1 7993 7993 18.146 1.9972 1 + 377 673 228 228 413 413 -0.01303133936426093 AEAMKPLN 8 Unmodified _AEAMKPLN_ 0 0 0 REV__ENSG00000114331|ENST00000326793|ACAP2 REV__ENSG00000114331|ENST00000326793|ACAP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2275085449219 2 437.228571 872.442588 NaN NaN NaN NaN NaN NaN NaN 59.625 1 59.625 59.125 60.125 0 0 0 0 0.21486 1 11423 11423 12.532 0.89125 1 + 378 15369 229 229 414 414 0.0012646709997170547 AEAMQHNE 8 Unmodified _AEAMQHNE_ 0 0 0 REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25848388671875 2 465.192716 928.37088 0.19544 9.0918E-05 -0.35037 -0.00016299 -0.15493 -7.2072E-05 465.19524153135706 27.777 0.77647 26.022 25.65 26.427 -1.7552 96 21 6 0 0 0 0.99312 1 4628 4628 10.074 2.1638 1 5480200 + 379 22269 230 230 415 415 -0.09617072324545006 AEANAFSVL 9 Unmodified _AEANAFSVL_ 0 0 0 ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENSG00000140740|ENST00000268379|UQCRC2 ENST00000563711.5_1_16:21973998-21987565:+|nuORF ENST00000563711.5_1_16:21973998-21987565:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5450439453125 2 461.23745 920.460347 0.038932 1.7957E-05 0.32641 0.00015055 0.36534 0.00016851 461.23761289208136 141.42 0.59721 136.43 135.96 136.56 -4.9877 23 16 2 0 0 0 0.5059 1 27246 27246 19.257 5.3509 1 2018700 380 4322 231 231 416 416 -0.003064943735239467 AEANAFSVL 9 Unmodified _AEANAFSVL_ 0 0 0 ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENSG00000140740|ENST00000268379|UQCRC2 ENST00000563711.5_1_16:21973998-21987565:+|nuORF ENST00000563711.5_1_16:21973998-21987565:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.23745 920.460347 -0.036736 -1.6944E-05 0.29653 0.00013677 0.25979 0.00011982 461.2375186276239 140.87 0.52383 136.22 136.05 136.58 -4.6493 -0.10364 -1.1873E-05 NaN 19.257 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2246600 381 4322 231 231 -0.003064943735239467 AEANCYTT 8 Unmodified _AEANCYTT_ 0 0 0 REV__ENSG00000175105|ENST00000636215|ZNF654 REV__ENSG00000175105|ENST00000636215|ZNF654 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21575927734375 2 436.676368 871.338183 0.083484 3.6455E-05 1.061 0.0004633 1.1445 0.00049975 436.67672085355656 87.334 0.69357 87.334 86.982 87.676 0 36 19 2 0 0 0 0.44108 1 17040 17040 30.637 2.1497 1 2315900 + 382 18456 232 232 417 417 -0.10263279447417517 AEANFRIYP 9 Unmodified _AEANFRIYP_ 0 0 0 ENSG00000122592|ENST00000242159|HOXA7 ENSG00000122592|ENST00000242159|HOXA7 ENSG00000122592|ENST00000242159|HOXA7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.279541015625 2 540.777274 1079.53999 0.54844 0.00029659 0.43209 0.00023367 0.98054 0.00053025 540.7772037818254 105.82 1.0475 105.82 105.28 106.33 0 74 29 3 0 0 0 0.015957 7 20795 20711;20712;20755;20793;20795;20842;20846 96.367 46.812 1 4550400 383 3235 233 233 418;419;420;421;422;423;424 422 0.003405723004561878 AEANFRIYP 9 Unmodified _AEANFRIYP_ 0 0 0 ENSG00000122592|ENST00000242159|HOXA7 ENSG00000122592|ENST00000242159|HOXA7 ENSG00000122592|ENST00000242159|HOXA7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.279052734375 2 540.777274 1079.53999 -0.1847 -9.988E-05 1.6973 0.00091788 1.5126 0.000818 541.2797446415681 110.12 1.4585 105.74 104.92 106.38 -4.3776 109 41 4 0 0 0 0.015957 5 21735 21637;21686;21732;21735;21780 96.367 50.346 1 5102700 384 3235 233 233 425;426;427;428;429 428 0.003405723004561878 AEANFRIYP 9 Unmodified _AEANFRIYP_ 0 0 0 ENSG00000122592|ENST00000242159|HOXA7 ENSG00000122592|ENST00000242159|HOXA7 ENSG00000122592|ENST00000242159|HOXA7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2794799804688 2 540.777274 1079.53999 -0.11425 -6.1784E-05 1.3141 0.00071064 1.1999 0.00064885 541.2795773388227 110.05 1.5504 105.6 104.85 106.4 -4.4518 98 43 3 0 0 0 0.019708 7 21204 21069;21109;21156;21158;21204;21241;21242 92.653 50.814 1 5997700 385 3235 233 233 430;431;432;433;434;435;436 434 0.003405723004561878 AEANFRIYP 9 Unmodified _AEANFRIYP_ 0 0 0 ENSG00000122592|ENST00000242159|HOXA7 ENSG00000122592|ENST00000242159|HOXA7 ENSG00000122592|ENST00000242159|HOXA7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26220703125 2 540.777274 1079.53999 0.72633 0.00039278 0.55166 0.00029832 1.278 0.00069111 540.7771481640634 109.88 1.4389 105.7 104.87 106.31 -4.1826 95 40 3 0 0 0 0.019708 7 21210 21064;21109;21154;21195;21210;21238;21242 92.653 54.478 1 5333300 386 3235 233 233 437;438;439;440;441;442;443 441 0.003405723004561878 AEANHFID 8 Unmodified _AEANHFID_ 0 0 0 nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-4|OGT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.238037109375 2 458.711599 915.408646 0.53852 0.00024703 -0.60948 -0.00027957 -0.070958 -3.2549E-05 458.7113726866572 44.75 0.70038 44.75 44.323 45.023 0 38 19 3 0 0 0 0.18575 1 8393 8393 66.457 37.375 1 4538100 387 4687 234 234 444 444 -0.052442380674278866 AEANHFID 8 Unmodified _AEANHFID_ 0 0 0 nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-4|OGT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22314453125 2 458.711599 915.408646 -0.15418 -7.0723E-05 0.37716 0.00017301 0.22298 0.00010228 458.7117192406948 47.57 0.62556 44.701 44.321 44.946 -2.869 31 17 2 0 0 0 0.17909 1 8991 8991 61.602 42.345 1 4299200 388 4687 234 234 445 445 -0.052442380674278866 AEANHFID 8 Unmodified _AEANHFID_ 0 0 0 nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-4|OGT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.234619140625 2 458.711599 915.408646 -0.045868 -2.104E-05 0.15772 7.235E-05 0.11186 5.131E-05 458.71166011298544 47.589 0.69798 44.647 44.342 45.04 -2.9421 32 19 2 0 0 0 0.21795 1 8653 8653 55.503 19.459 1 3788800 389 4687 234 234 446 446 -0.052442380674278866 AEANHFID 8 Unmodified _AEANHFID_ 0 0 0 nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-4|OGT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2392578125 2 458.711599 915.408646 -0.093571 -4.2922E-05 0.096744 4.4377E-05 0.0031728 1.4554E-06 458.71161124987924 47.524 0.6522 44.575 44.33 44.982 -2.9499 32 18 2 0 0 0 0.17068 1 8664 8664 72.968 44.481 1 3025900 390 4687 234 234 447 447 -0.052442380674278866 AEANNLAAAA 10 Unmodified _AEANNLAAAA_ 0 0 0 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2296447753906 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.556 1 39.837 39.337 40.337 -2.7191 0 0 0 0.10826 1 7963 7963 47.594 16.326 1 391 6933 235 235 448 448 -0.014885665216866073 AEANNLAAAA 10 Unmodified _AEANNLAAAA_ 0 0 0 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2303161621094 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.577 1 39.926 39.426 40.426 -2.651 0 0 0 0.10125 1 7667 7667 45.7 9.1934 1 392 6933 235 235 449 449 -0.014885665216866073 AEANNLAAAA 10 Unmodified _AEANNLAAAA_ 0 0 0 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2302551269531 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.812 1 40.161 39.661 40.661 -2.651 0 0 0 0.14075 1 7715 7715 38.176 13.185 1 393 6933 235 235 450 450 -0.014885665216866073 AEANNLAAAA 10 Unmodified _AEANNLAAAA_ 0 0 0 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2296447753906 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.495 1 39.889 39.389 40.389 -2.606 0 0 0 0.1839 1 7645 7645 31.268 2.7738 1 394 6933 235 235 451 451 -0.014885665216866073 AEANNLAAAA 10 Unmodified _AEANNLAAAA_ 0 0 0 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2299499511719 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.722 1 40.116 39.616 40.616 -2.606 0 0 0 0.12667 1 7691 7691 40.239 14.219 1 395 6933 235 235 452 452 -0.014885665216866073 AEANNLAAAA 10 Unmodified _AEANNLAAAA_ 0 0 0 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.24127197265625 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.9 1 40.294 39.794 40.794 -2.606 0 0 0 0.22527 1 7727 7727 21.537 4.5947 1 396 6933 235 235 453 453 -0.014885665216866073 AEANNLAAV 9 Unmodified _AEANNLAAV_ 0 0 0 ENST00000477642.5_1_2:38525261-38527422:-|nuORF;ATL1|p.M371Wfs*29|1|0.04|ENSG00000198513|chr14:50623234-50623234|A/-|frameshift_variant;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2 ENST00000477642.5_1_2:38525261-38527422:-|nuORF ENST00000477642.5_1_2:38525261-38527422:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2286682128906 2 436.727249 871.439946 -0.20024 -8.745E-05 0.1628 7.1099E-05 -0.037439 -1.635E-05 436.72729786253467 58.81 0.53027 55.899 55.509 56.039 -2.9105 25 14 2 0 0 0 0.068672 5 11301 11257;11271;11292;11301;11305 51.63 30.323 1 1772500 397 256 236 236 454;455;456;457;458 457 -0.0009166503334654408 AEANNLAAV 9 Unmodified _AEANNLAAV_ 0 0 0 ENST00000477642.5_1_2:38525261-38527422:-|nuORF;ATL1|p.M371Wfs*29|1|0.04|ENSG00000198513|chr14:50623234-50623234|A/-|frameshift_variant;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2 ENST00000477642.5_1_2:38525261-38527422:-|nuORF ENST00000477642.5_1_2:38525261-38527422:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2287902832031 2 436.727249 871.439946 0.043693 1.9082E-05 0.032502 1.4195E-05 0.076196 3.3277E-05 436.72720218186726 59.185 0.49589 55.871 55.535 56.031 -3.3139 23 13 2 0 0 0 0.091132 2 11000 10955;11000 34.402 12.338 1 1210100 398 256 236 236 459;460 460 -0.0009166503334654408 AEANNLAAV 9 Unmodified _AEANNLAAV_ 0 0 0 ENST00000477642.5_1_2:38525261-38527422:-|nuORF;ATL1|p.M371Wfs*29|1|0.04|ENSG00000198513|chr14:50623234-50623234|A/-|frameshift_variant;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2 ENST00000477642.5_1_2:38525261-38527422:-|nuORF ENST00000477642.5_1_2:38525261-38527422:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2286682128906 2 436.727249 871.439946 -0.069224 -3.0232E-05 0.3917 0.00017107 0.32248 0.00014084 436.7273340096904 59.119 0.45465 55.914 55.646 56.1 -3.2052 20 12 2 0 0 0 0.10043 1 11027 11027 31.728 28.141 1 1354300 399 256 236 236 461 461 -0.0009166503334654408 AEANSLVNAA 10 Unmodified _AEANSLVNAA_ 0 0 0 ENSG00000064547|ENST00000407877|LPAR2 ENSG00000064547|ENST00000407877|LPAR2 ENSG00000064547|ENST00000407877|LPAR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.245361328125 2 480.243264 958.471974 -0.060353 -2.8984E-05 -0.26338 -0.00012649 -0.32373 -0.00015547 480.243141063265 58.22 0.85585 55.309 54.895 55.751 -2.9105 62 24 3 0 0 0 0.14103 1 11131 11131 49.554 7.4597 1 7966300 400 1337 237 237 462 462 -0.008922973501853448 AEANSLVNAA 10 Unmodified _AEANSLVNAA_ 0 0 0 ENSG00000064547|ENST00000407877|LPAR2 ENSG00000064547|ENST00000407877|LPAR2 ENSG00000064547|ENST00000407877|LPAR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2457275390625 2 480.243264 958.471974 0.096045 4.6125E-05 -0.45859 -0.00022023 -0.36255 -0.00017411 480.24306188733556 58.623 1.2005 55.371 54.927 56.127 -3.2517 71 33 3 0 0 0 0.14103 2 10862 10862;10904 49.554 13.427 1 6403000 401 1337 237 237 463;464 463 -0.008922973501853448 AEANSLVNAA 10 Unmodified _AEANSLVNAA_ 0 0 0 ENSG00000064547|ENST00000407877|LPAR2 ENSG00000064547|ENST00000407877|LPAR2 ENSG00000064547|ENST00000407877|LPAR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2457275390625 2 480.243264 958.471974 0.054424 2.6137E-05 -0.27137 -0.00013032 -0.21695 -0.00010419 480.24313349322534 58.683 1.1765 55.477 55.026 56.202 -3.2052 72 33 3 0 0 0 0.23598 1 10952 10952 41.956 12.874 1 6976900 402 1337 237 237 465 465 -0.008922973501853448 AEAPAGRMI 9 Unmodified _AEAPAGRMI_ 0 0 0 ENST00000486212.6_1_2:202531091-202563346:-|nuORF ENST00000486212.6_1_2:202531091-202563346:-|nuORF ENST00000486212.6_1_2:202531091-202563346:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2377014160156 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 49.973 1 47.092 46.592 47.592 -2.8811 0 0 0 0.21469 1 9473 9473 19.257 1.122 1 403 10452 238 238 466 466 0.003732718485366604 AEAPAGRMI 9 Unmodified _AEAPAGRMI_ 0 0 0 ENST00000486212.6_1_2:202531091-202563346:-|nuORF ENST00000486212.6_1_2:202531091-202563346:-|nuORF ENST00000486212.6_1_2:202531091-202563346:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23858642578125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 97.866 1 93.621 93.121 94.121 -4.2447 0 0 0 0.22621 1 18699 18699 15.847 1.2655 1 404 10452 238 238 467 467 0.003732718485366604 AEAPASVRD 9 Unmodified _AEAPASVRD_ 0 0 0 ENSG00000204532|ENST00000534327|ZSCAN5C;ENSG00000197213|ENST00000586855|ZSCAN5B ENSG00000204532|ENST00000534327|ZSCAN5C ENSG00000204532|ENST00000534327|ZSCAN5C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2301025390625 2 458.230156 914.445759 0.42672 0.00019553 -0.18962 -8.6888E-05 0.2371 0.00010865 458.2300430884407 21.749 0.50364 20.274 20.089 20.593 -1.4742 22 13 2 0 0 0 0.36931 1 3676 3676 27.629 0.74515 1 3336100 405 7586 239 239 468 468 -0.0148856652166387 AEAPGAPAT 9 Unmodified _AEAPGAPAT_ 0 0 0 ENST00000586444.1_1_16:5147545-5147740:-|nuORF ENST00000586444.1_1_16:5147545-5147740:-|nuORF ENST00000586444.1_1_16:5147545-5147740:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3869018554688 1 784.383559 783.376283 0.48026 0.00037671 0.37328 0.0002928 0.85354 0.0006695 784.3837993528858 22.557 0.66869 22.557 22.258 22.927 0 37 18 3 0 0 0 0.045444 2 3834 3834;3836 43.858 9.7559 1 3659400 406 11551 240 240 469;470 469 -0.024070254704270155 AEAPGAPAT 9 Unmodified _AEAPGAPAT_ 0 0 0 ENST00000586444.1_1_16:5147545-5147740:-|nuORF ENST00000586444.1_1_16:5147545-5147740:-|nuORF ENST00000586444.1_1_16:5147545-5147740:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3870849609375 1 784.383559 783.376283 1.4525 0.0011393 -0.7187 -0.00056374 0.73382 0.0005756 784.382917636994 24.031 0.63296 22.478 22.217 22.85 -1.5532 37 17 3 0 0 0 0.039965 3 4188 4142;4188;4191 49.933 17.816 1 4357500 407 11551 240 240 471;472;473 472 -0.024070254704270155 AEAPGAPAT 9 Unmodified _AEAPGAPAT_ 0 0 0 ENST00000586444.1_1_16:5147545-5147740:-|nuORF ENST00000586444.1_1_16:5147545-5147740:-|nuORF ENST00000586444.1_1_16:5147545-5147740:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.387451171875 1 784.383559 783.376283 0.22019 0.00017271 0.60955 0.00047812 0.82974 0.00065083 784.384006537694 23.942 0.55911 22.407 22.191 22.751 -1.5342 31 15 3 0 0 0 0.069179 3 3906 3868;3906;3909 49.933 7.8384 1 2726300 408 11551 240 240 474;475;476 475 -0.024070254704270155 AEAPGAPAT 9 Unmodified _AEAPGAPAT_ 0 0 0 ENST00000586444.1_1_16:5147545-5147740:-|nuORF ENST00000586444.1_1_16:5147545-5147740:-|nuORF ENST00000586444.1_1_16:5147545-5147740:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.386962890625 1 784.383559 783.376283 -0.11716 -9.1897E-05 0.94025 0.00073752 0.82309 0.00064562 784.3842379832024 24.189 0.58942 22.336 22.12 22.71 -1.8534 34 16 3 0 0 0 0.095246 3 3949 3900;3901;3949 46.021 9.9768 1 2856700 409 11551 240 240 477;478;479 479 -0.024070254704270155 AEAPGAVAG 9 Unmodified _AEAPGAVAG_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3;ENST00000480209.1_1_7:44524201-44524862:-|nuORF ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3915405273438 1 742.372995 741.365718 1.6838 0.00125 -1.1116 -0.00082521 0.57219 0.00042478 742.3721570896492 24.769 0.58202 23.121 22.789 23.371 -1.6482 28 16 2 0 0 0 0.043281 3 4322 4275;4322;4328 57.471 6.6163 1 1139900 410 1115 241 241 480;481;482 481 -0.015310081248458118 AEAPHLVH 8 Unmodified _AEAPHLVH_ 0 0 0 ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA;ENST00000504568.5_1_4:980881-994673:+|nuORF;ENST00000508168.5_1_4:980866-994923:+|nuORF;ENST00000506561.5_1_4:980866-994923:+|nuORF ENST00000514698.5_1_4:980866-997838:+|nuORF ENST00000514698.5_1_4:980866-997838:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23101806640625 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 38.955 1 36.406 35.906 36.906 -2.5491 0 0 0 0.21452 1 7233 7233 13.508 0.97634 1 411 3474 242 242 483 483 0.009123624117592044 AEAPKFPTP 9 Unmodified _AEAPKFPTP_ 0 0 0 ENST00000503063.5_1_17:48625445-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-4|SPATA20;SPATA20|p.S677Pfs*29|1|0.12|ENSG00000006282|chr17:50554367-50554367|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20 ENST00000503063.5_1_17:48625445-48628667:+|nuORF ENST00000503063.5_1_17:48625445-48628667:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7244873046875 2 479.255643 956.496732 0.22604 0.00010833 0.13338 6.3923E-05 0.35942 0.00017225 479.2556778585632 81.836 1.5779 81.836 81.092 82.67 0 98 44 3 0 0 0 0.14943 1 15947 15947 61.602 29.485 1 3540200 412 10641 243 243 484 484 0.016743825231969822 AEAPKFPTP 9 Unmodified _AEAPKFPTP_ 0 0 0 ENST00000503063.5_1_17:48625445-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-4|SPATA20;SPATA20|p.S677Pfs*29|1|0.12|ENSG00000006282|chr17:50554367-50554367|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20 ENST00000503063.5_1_17:48625445-48628667:+|nuORF ENST00000503063.5_1_17:48625445-48628667:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 480.2580261230469 2 479.255643 956.496732 -0.031525 -1.5108E-05 0.16022 7.6786E-05 0.12869 6.1678E-05 479.25571474953716 85.68 1.6309 82.016 81.16 82.791 -3.6641 99 45 3 0 0 0 0.55979 1 16872 16872 15.847 5.6638 1 5397100 413 10641 243 243 485 485 0.016743825231969822 AEAPKFPTP 9 Unmodified _AEAPKFPTP_ 0 0 0 ENST00000503063.5_1_17:48625445-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-4|SPATA20;SPATA20|p.S677Pfs*29|1|0.12|ENSG00000006282|chr17:50554367-50554367|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20 ENST00000503063.5_1_17:48625445-48628667:+|nuORF ENST00000503063.5_1_17:48625445-48628667:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7271728515625 2 479.255643 956.496732 0.2462 0.00011799 0.07126 3.4152E-05 0.31746 0.00015214 479.2555804576431 85.794 1.6485 81.844 81.142 82.79 -3.9503 99 46 3 0 0 0 0.033674 1 16322 16322 96.936 48.59 1 4619500 414 10641 243 243 486 486 0.016743825231969822 AEAPKFPTP 9 Unmodified _AEAPKFPTP_ 0 0 0 ENST00000503063.5_1_17:48625445-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-4|SPATA20;SPATA20|p.S677Pfs*29|1|0.12|ENSG00000006282|chr17:50554367-50554367|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20 ENST00000503063.5_1_17:48625445-48628667:+|nuORF ENST00000503063.5_1_17:48625445-48628667:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7229919433594 2 479.255643 956.496732 0.029284 1.4035E-05 0.32593 0.0001562 0.35521 0.00017024 479.2557119009995 85.69 1.7753 81.967 81.103 82.878 -3.7231 118 50 3 0 0 0 0.035659 1 16457 16457 74.2 32.105 1 5777000 415 10641 243 243 487 487 0.016743825231969822 AEAPLTSGQ 9 Unmodified _AEAPLTSGQ_ 0 0 0 REV__TRAPPC9|p.Q563Hfs*5|1|0.04|ENSG00000167632|chr8:140300548-140300549|-/ATGCATGTGCA|frameshift_variant REV__TRAPPC9|p.Q563Hfs*5|1|0.04|ENSG00000167632|chr8:140300548-140300549|-/ATGCATGTGCA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2182312011719 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 38.549 1 36.107 35.607 36.607 -2.4419 0 0 0 0.21065 1 6864 6864 20.454 3.5113 1 + 416 17947 244 244 488 488 -0.01735371270228825 AEAPPGTLA 9 Unmodified _AEAPPGTLA_ 0 0 0 HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant;ENSG00000153976|ENST00000284110|HS3ST3A1 HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 414.2208251953125 2 413.718893 825.423233 -0.28657 -0.00011856 0.35893 0.0001485 0.072363 2.9938E-05 413.71897808046276 66.131 1.3562 66.131 65.586 66.942 0 69 38 2 0 0 0 0.12935 1 12702 12702 7.4771 2.7611 1 5579700 417 4988 245 245 489 489 0.0035383408071538724 AEAPPGTLA 9 Unmodified _AEAPPGTLA_ 0 0 0 HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant;ENSG00000153976|ENST00000284110|HS3ST3A1 HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 413.718893 825.423233 -0.25867 -0.00010702 0.47432 0.00019624 0.21565 8.9219E-05 413.718979490234 69.52 1.4484 66.341 65.622 67.071 -3.1796 0.033384 0.00022169 NaN 7.4771 83 40 3 NaN NaN NaN NaN 0 NaN NaN 0 5764300 418 4988 245 245 0.0035383408071538724 AEAPPGTLA 9 Unmodified _AEAPPGTLA_ 0 0 0 HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant;ENSG00000153976|ENST00000284110|HS3ST3A1 HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 413.718893 825.423233 0.35209 0.00014567 -0.19384 -8.0195E-05 0.15825 6.5471E-05 413.71873517446386 69.931 1.4743 66.351 65.719 67.193 -3.5798 0.043726 -0.00033118 NaN 7.4771 87 41 3 NaN NaN NaN NaN 0 NaN NaN 0 3872700 419 4988 245 245 0.0035383408071538724 AEAPPGTLA 9 Unmodified _AEAPPGTLA_ 0 0 0 HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant;ENSG00000153976|ENST00000284110|HS3ST3A1 HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 413.718893 825.423233 -0.046037 -1.9046E-05 0.14581 6.0324E-05 0.099773 4.1278E-05 413.7189025696448 69.82 1.4353 66.406 65.749 67.185 -3.4133 0.099119 -5.0136E-05 NaN 7.4771 73 40 2 NaN NaN NaN NaN 0 NaN NaN 0 4831500 420 4988 245 245 0.0035383408071538724 AEAPPGVET 9 Unmodified _AEAPPGVET_ 0 0 0 ENST00000545388.2_1_16:71955203-71956613:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000545388.2_1_16:71955203-71956613:+|nuORF ENST00000545388.2_1_16:71955203-71956613:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23028564453125 2 435.713808 869.413062 0.27079 0.00011799 -0.27708 -0.00012073 -0.0062902 -2.7407E-06 435.7136327371892 38.8 1.7153 38.8 38.037 39.752 0 163 48 5 0 0 0 0.39168 4 7147 7140;7147;7202;7250 24.021 10.205 1 39128000 421 6766 246 246 490;491;492;493 491 -0.026867736445183255 AEAPPGVET 9 Unmodified _AEAPPGVET_ 0 0 0 ENST00000545388.2_1_16:71955203-71956613:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000545388.2_1_16:71955203-71956613:+|nuORF ENST00000545388.2_1_16:71955203-71956613:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2177429199219 2 435.713808 869.413062 -0.31712 -0.00013817 0.33674 0.00014672 0.019617 8.5475E-06 435.71390561152623 41.466 1.883 38.831 38.041 39.924 -2.6348 182 53 6 0 0 0 0.25183 4 7699 7653;7699;7748;7804 34.402 13.948 1 50304000 422 6766 246 246 494;495;496;497 495 -0.026867736445183255 AEAPPGVET 9 Unmodified _AEAPPGVET_ 0 0 0 ENST00000545388.2_1_16:71955203-71956613:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000545388.2_1_16:71955203-71956613:+|nuORF ENST00000545388.2_1_16:71955203-71956613:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 435.713808 869.413062 -0.086276 -3.7592E-05 0.095995 4.1827E-05 0.009719 4.2347E-06 435.71379446738734 41.509 1.8188 38.858 37.992 39.811 -2.651 0.0091689 1.27E-05 NaN 34.402 133 51 3 NaN NaN NaN NaN 0 NaN NaN 0 40007000 423 6766 246 246 -0.026867736445183255 AEAPPGVET 9 Unmodified _AEAPPGVET_ 0 0 0 ENST00000545388.2_1_16:71955203-71956613:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000545388.2_1_16:71955203-71956613:+|nuORF ENST00000545388.2_1_16:71955203-71956613:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 435.713808 869.413062 -0.13957 -6.0813E-05 0.15231 6.6362E-05 0.012737 5.5496E-06 435.7138249536706 41.396 1.7948 38.906 38.109 39.904 -2.4896 0.057412 6.1772E-05 NaN 34.402 136 50 3 NaN NaN NaN NaN 0 NaN NaN 0 29333000 424 6766 246 246 -0.026867736445183255 AEAPPPKIP 9 Unmodified _AEAPPPKIP_ 0 0 0 nc|ENSG00000107643|P45983-3|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF;nc|ENSG00000107643|P45983-5|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.245849609375 2 460.26601 918.517468 0.019017 8.7528E-06 0.1195 5.5002E-05 0.13852 6.3755E-05 460.266043035365 56.786 3.2472 56.786 55.44 58.687 0 350 92 6 0 0 0 0.09885 2 11074 10637;11074 56.177 32.156 1 135650000 425 2432 247 247 498;499 499 0.054949729028635375 AEAPPPKIP 9 Unmodified _AEAPPPKIP_ 0 0 0 nc|ENSG00000107643|P45983-3|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF;nc|ENSG00000107643|P45983-5|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23956298828125 2 460.26601 918.517468 NaN NaN NaN NaN NaN NaN NaN 58.934 1 58.934 58.434 59.434 0 0 0 0 0.23508 1 11286 11286 10.074 1.4806 1 426 2432 247 247 500 500 0.054949729028635375 AEAPPPKIP 9 Unmodified _AEAPPPKIP_ 0 0 0 nc|ENSG00000107643|P45983-3|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF;nc|ENSG00000107643|P45983-5|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24090576171875 2 460.26601 918.517468 NaN NaN NaN NaN NaN NaN NaN 62.076 1 59.114 58.614 59.614 -2.9614 0 0 0 0.23277 1 11973 11973 13.906 3.0821 1 427 2432 247 247 501 501 0.054949729028635375 AEAPPPKIP 9 Unmodified _AEAPPPKIP_ 0 0 0 nc|ENSG00000107643|P45983-3|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF;nc|ENSG00000107643|P45983-5|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2264404296875 2 460.26601 918.517468 -0.11563 -5.3219E-05 0.23714 0.00010915 0.12151 5.5928E-05 460.2660942492789 59.65 3.578 56.716 55.349 58.927 -2.9333 390 102 6 0 0 0 0.029993 1 11450 11450 96.367 58.393 1 157740000 428 2432 247 247 502 502 0.054949729028635375 AEAPPPKIP 9 Unmodified _AEAPPPKIP_ 0 0 0 nc|ENSG00000107643|P45983-3|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF;nc|ENSG00000107643|P45983-5|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2408142089844 2 460.26601 918.517468 0.039429 1.8148E-05 0.087872 4.0444E-05 0.1273 5.8592E-05 460.26603256427063 60.025 4.0421 56.712 55.321 59.363 -3.3139 397 114 7 0 0 0 0.12505 4 10954 10954;11159;11229;11520 47.749 17.992 1 141100000 429 2432 247 247 503;504;505;506 503 0.054949729028635375 AEAPPPKIP 9 Unmodified _AEAPPPKIP_ 0 0 0 nc|ENSG00000107643|P45983-3|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF;nc|ENSG00000107643|P45983-5|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2402648925781 2 460.26601 918.517468 0.13697 6.3042E-05 -0.021492 -9.8921E-06 0.11548 5.3149E-05 460.2659912400748 59.88 3.807 56.656 55.382 59.189 -3.2237 396 108 7 0 0 0 0.072372 2 11412 10955;11412 63.961 36.332 1 146240000 430 2432 247 247 507;508 508 0.054949729028635375 AEAPPPPPP 9 Unmodified _AEAPPPPPP_ 0 0 0 ENST00000354574.8_1_12:110434058-110434154:-|nuORF;nc|ENSG00000154099|Q8NEP3-2|DNAAF1;ENSG00000154099|ENST00000378553|DNAAF1 REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2305908203125 2 436.729261 871.443968 0.16447 7.1831E-05 -0.3923 -0.00017133 -0.22783 -9.95E-05 436.7290423685497 34.692 2.6267 34.692 33.76 36.387 0 162 75 3 0 0 0 0.035055 17 6347 6200;6202;6247;6249;6298;6347;6384;6393;6435;6439;6443;6483;6485;6527;6530;6536;6580 77.984 18.082 1 4172500 431 15574 248 248 509;510;511;512;513;514;515;516;517;518;519;520;521;522;523;524;525 514 0.00310424460383274 AEAPPPPPP 9 Unmodified _AEAPPPPPP_ 0 0 0 ENST00000354574.8_1_12:110434058-110434154:-|nuORF;nc|ENSG00000154099|Q8NEP3-2|DNAAF1;ENSG00000154099|ENST00000378553|DNAAF1 REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2304992675781 2 436.729261 871.443968 -0.50946 -0.0002225 0.19124 8.352E-05 -0.31822 -0.00013898 436.72931259053325 37.375 3.2487 34.907 33.728 36.976 -2.4688 175 92 3 0 0 0 0.022915 12 6881 6724;6769;6808;6880;6881;6897;6922;6925;6943;6947;6971;6972 89.427 22.083 1 4084200 432 15574 248 248 526;527;528;529;530;531;532;533;534;535;536;537 530 0.00310424460383274 AEAPPPPPP 9 Unmodified _AEAPPPPPP_ 0 0 0 ENST00000354574.8_1_12:110434058-110434154:-|nuORF;nc|ENSG00000154099|Q8NEP3-2|DNAAF1;ENSG00000154099|ENST00000378553|DNAAF1 REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2315368652344 2 436.729261 871.443968 -0.38795 -0.00016943 -0.59558 -0.00026011 -0.98353 -0.00042954 436.72901988124397 40.185 0.91867 37.55 36.81 37.729 -2.6348 34 25 2 0 0 0 0.095051 2 7437 7437;7485 57.471 6.6163 1 1008800 433 15574 248 248 538;539 538 0.00310424460383274 AEAPPPPPP 9 Unmodified _AEAPPPPPP_ 0 0 0 ENST00000354574.8_1_12:110434058-110434154:-|nuORF;nc|ENSG00000154099|Q8NEP3-2|DNAAF1;ENSG00000154099|ENST00000378553|DNAAF1 REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2307434082031 2 436.729261 871.443968 0.047897 2.0918E-05 -0.42038 -0.00018359 -0.37249 -0.00016268 436.72904856131953 37.385 3.7576 35.037 33.898 37.655 -2.3479 187 107 3 0 0 0 0.022915 15 6648 6445;6528;6569;6598;6600;6610;6646;6648;6654;6657;6688;6690;6700;6706;6742 89.427 22.083 1 3730100 434 15574 248 248 540;541;542;543;544;545;546;547;548;549;550;551;552;553;554 547 0.00310424460383274 AEAPPPPPP 9 Unmodified _AEAPPPPPP_ 0 0 0 ENST00000354574.8_1_12:110434058-110434154:-|nuORF;nc|ENSG00000154099|Q8NEP3-2|DNAAF1;ENSG00000154099|ENST00000378553|DNAAF1 REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2297668457031 2 436.729261 871.443968 -0.043306 -1.8913E-05 -1.9441 -0.00084906 -1.9874 -0.00086797 436.7284328949964 40.273 0.38624 37.733 37.429 37.815 -2.5398 17 10 2 0 0 0 0.21803 1 7171 7171 10.899 6.183 1 1678300 435 15574 248 248 555 555 0.00310424460383274 AEAPPPPPP 9 Unmodified _AEAPPPPPP_ 0 0 0 ENST00000354574.8_1_12:110434058-110434154:-|nuORF;nc|ENSG00000154099|Q8NEP3-2|DNAAF1;ENSG00000154099|ENST00000378553|DNAAF1 REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2213439941406 2 436.729261 871.443968 0.043328 1.8922E-05 -0.27809 -0.00012145 -0.23477 -0.00010253 436.72909411444067 37.22 3.601 34.882 33.852 37.453 -2.3375 208 102 3 0 0 0 0.035055 15 6605 6489;6493;6535;6578;6601;6605;6621;6624;6676;6720;6721;6767;6813;6816;6909 77.984 16.489 1 3414800 436 15574 248 248 556;557;558;559;560;561;562;563;564;565;566;567;568;569;570 561 0.00310424460383274 AEAPPPPPP 9 Unmodified _AEAPPPPPP_ 0 0 0 ENST00000354574.8_1_12:110434058-110434154:-|nuORF;nc|ENSG00000154099|Q8NEP3-2|DNAAF1;ENSG00000154099|ENST00000378553|DNAAF1 REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2275695800781 2 436.729261 871.443968 -0.070682 -3.0869E-05 -0.99842 -0.00043604 -1.0691 -0.00046691 436.728845165614 40.207 0.52975 37.717 37.301 37.83 -2.4896 26 14 2 0 0 0 0.21803 2 7141 7141;7189 7.4771 2.7611 1 792360 437 15574 248 248 571;572 571 0.00310424460383274 AEAPPPPPP 9 Unmodified _AEAPPPPPP_ 0 0 0 ENST00000354574.8_1_12:110434058-110434154:-|nuORF;nc|ENSG00000154099|Q8NEP3-2|DNAAF1;ENSG00000154099|ENST00000378553|DNAAF1 REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21844482421875 2 436.729261 871.443968 -0.1507 -6.5815E-05 -3.0236 -0.0013205 -3.1743 -0.0013863 436.727845992557 42.019 0.35017 39.413 39.118 39.468 -2.606 11 9 2 0 0 0 0.36689 1 7547 7547 42.095 25.152 1 389180 438 15574 248 248 573 573 0.00310424460383274 AEAPPSVAP 9 Unmodified _AEAPPSVAP_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C;nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4558715820312 1 838.430509 837.423233 0.20297 0.00017018 0.1869 0.0001567 0.38987 0.00032688 838.430600007533 52.28 2.1401 49.398 48.493 50.633 -2.8824 152 61 3 0 0 0 0.067773 1 9880 9880 65.235 18.314 1 24091000 439 1107 249 249 574 574 -0.0019816591927792615 AEAPPSVAP 9 Unmodified _AEAPPSVAP_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C;nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 838.430509 837.423233 0.73745 0.0006183 -0.44552 -0.00037354 0.29193 0.00024476 838.4300701724263 49.282 2.0531 49.282 48.418 50.471 0 -0.092006 -0.000374 NaN 65.235 145 58 3 NaN NaN NaN NaN 0 NaN NaN 0 20306000 440 1107 249 249 -0.0019816591927792615 AEAPPSVAP 9 Unmodified _AEAPPSVAP_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C;nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 838.430509 837.423233 0.28375 0.00023791 0.16369 0.00013724 0.44744 0.00037515 838.4305820660579 52.491 2.0377 49.404 48.569 50.607 -3.0876 0.029834 0.00013678 NaN 65.235 152 57 3 NaN NaN NaN NaN 0 NaN NaN 0 23478000 441 1107 249 249 -0.0019816591927792615 AEAPSSPDV 9 Unmodified _AEAPSSPDV_ 0 0 0 PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1 PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2184143066406 2 436.70344 871.392327 0.19461 8.4986E-05 -0.12358 -5.397E-05 0.071023 3.1016E-05 436.70341317831895 35.942 0.80135 35.942 35.688 36.49 0 36 22 2 0 0 0 0.09885 1 6662 6662 56.177 12.319 1 4442100 442 1425 250 250 575 575 -0.04851364024182203 AEAPSSPDV 9 Unmodified _AEAPSSPDV_ 0 0 0 PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1 PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21832275390625 2 436.70344 871.392327 -0.45982 -0.00020081 0.37068 0.00016188 -0.08914 -3.8928E-05 436.7035761311512 38.478 0.83562 35.929 35.596 36.431 -2.5491 50 23 3 0 0 0 0.12542 1 7154 7154 56.177 10.156 1 4884300 443 1425 250 250 576 576 -0.04851364024182203 AEAPSSPDV 9 Unmodified _AEAPSSPDV_ 0 0 0 PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1 PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22332763671875 2 436.70344 871.392327 0.011868 5.1829E-06 -0.035341 -1.5434E-05 -0.023473 -1.0251E-05 436.70339606220807 38.493 0.77351 36.051 35.775 36.549 -2.4419 48 21 3 0 0 0 0.11717 2 6814 6814;6938 49.933 19.296 1 3261900 444 1425 250 250 577;578 577 -0.04851364024182203 AEAPSSPDV 9 Unmodified _AEAPSSPDV_ 0 0 0 PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1 PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2187805175781 2 436.70344 871.392327 0.00025989 1.135E-07 0.049829 2.1761E-05 0.050089 2.1874E-05 436.7034525801379 38.478 0.87034 36.073 35.674 36.545 -2.4049 51 24 3 0 0 0 0.12542 1 6861 6861 65.235 27.261 1 2598600 445 1425 250 250 579 579 -0.04851364024182203 AEAPTAQVPPS 11 Unmodified _AEAPTAQVPPS_ 0 0 0 ENSG00000272886|ENST00000610213|DCP1A;nc|ENSG00000272886|Q9NPI6-2|DCP1A ENSG00000272886|ENST00000610213|DCP1A ENSG00000272886|ENST00000610213|DCP1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.272705078125 2 534.272021 1066.52949 0.375 0.00020035 0.92313 0.0004932 1.2981 0.00069356 534.2724032892129 50.988 0.69656 47.943 47.53 48.226 -3.0453 32 14 3 0 0 0 0.69278 1 9320 9320 12.241 0.60036 1 2756200 446 8007 251 251 580 580 -0.0011145514461077255 AEAQDLVLG 9 Unmodified _AEAQDLVLG_ 0 0 0 REV__ENSG00000105519|ENST00000588776|CAPS REV__ENSG00000105519|ENST00000588776|CAPS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2415771484375 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 43.187 1 40.581 40.081 41.081 -2.606 0 0 0 0.13613 1 7788 7788 32.305 11.852 1 + 447 14998 252 252 581 581 0.010254882809022092 AEAQDLVLG 9 Unmodified _AEAQDLVLG_ 0 0 0 REV__ENSG00000105519|ENST00000588776|CAPS REV__ENSG00000105519|ENST00000588776|CAPS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22509765625 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 43.232 1 40.626 40.126 41.126 -2.606 0 0 0 0.16428 1 7797 7797 28.487 9.2299 1 + 448 14998 252 252 582 582 0.010254882809022092 AEAQHLYQS 9 Unmodified _AEAQHLYQS_ 0 0 0 nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG nc|ENSG00000227345|Q86W56-5|PARG nc|ENSG00000227345|Q86W56-5|PARG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6969604492188 2 523.748713 1045.48287 0.73379 0.00038432 -0.12171 -6.3744E-05 0.61208 0.00032058 523.7486918800383 27.608 0.52297 25.826 25.56 26.083 -1.7821 40 14 4 0 0 0 0.030811 1 4891 4891 80.676 38.836 1 4455200 449 7798 253 253 583 583 -0.038048949759058814 AEAQHLYQS 9 Unmodified _AEAQHLYQS_ 0 0 0 nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG nc|ENSG00000227345|Q86W56-5|PARG nc|ENSG00000227345|Q86W56-5|PARG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6864013671875 2 523.748713 1045.48287 0.25523 0.00013368 0.55221 0.00028922 0.80744 0.0004229 523.7489924297463 27.646 0.49843 25.65 25.396 25.894 -1.9962 35 13 4 0 0 0 0.15889 1 4638 4638 36.81 35.068 1 4141300 450 7798 253 253 584 584 -0.038048949759058814 AEAQHLYQS 9 Unmodified _AEAQHLYQS_ 0 0 0 nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG nc|ENSG00000227345|Q86W56-5|PARG nc|ENSG00000227345|Q86W56-5|PARG MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.748713 1045.48287 0.25523 0.00013368 0.55221 0.00028922 0.80744 0.0004229 523.7489924297463 27.646 0.49843 25.65 25.396 25.894 -1.9962 -0.087974 0.00036165 NaN 80.676 35 13 4 NaN NaN NaN NaN 0 NaN NaN 0 4141300 451 7798 253 253 -0.038048949759058814 AEAQPEDLS 9 Unmodified _AEAQPEDLS_ 0 0 0 ZNF500|p.P312Hfs*29|1|0.17|ENSG00000103199|chr16:4752884-4752884|G/-|frameshift_variant;nc|ENSG00000103199|O60304-2|ZNF500;ENSG00000103199|ENST00000219478|ZNF500 ZNF500|p.P312Hfs*29|1|0.17|ENSG00000103199|chr16:4752884-4752884|G/-|frameshift_variant ZNF500|p.P312Hfs*29|1|0.17|ENSG00000103199|chr16:4752884-4752884|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23388671875 2 480.219454 958.424355 0.20081 9.6435E-05 -2.3271 -0.0011175 -2.1263 -0.0010211 480.21854788111295 63.949 0.55912 60.533 60.286 60.846 -3.4158 30 15 3 0 0 0 0.62102 1 11914 11914 11.64 0.52583 1 1963200 452 2174 254 254 585 585 -0.056519963410323726 AEAQPMAVV 9 Unmodified _AEAQPMAVV_ 0 0 0 nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;ENSG00000140464|ENST00000268058|PML nc|ENSG00000140464|P29590-3|PML nc|ENSG00000140464|P29590-3|PML MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2339172363281 2 458.233853 914.453153 0.58558 0.00026833 -0.23674 -0.00010848 0.34884 0.00015985 458.2336905345793 81.181 0.80939 81.181 80.84 81.649 0 56 22 3 0 0 0 0.053942 3 15799 15747;15799;15847 69.105 27.01 1 8951600 453 12355 255 255 586;587;588 587 -0.007495502455867609 AEAQPMAVV 9 Unmodified _AEAQPMAVV_ 0 0 0 nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;ENSG00000140464|ENST00000268058|PML nc|ENSG00000140464|P29590-3|PML nc|ENSG00000140464|P29590-3|PML MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2338562011719 2 458.233853 914.453153 -0.13044 -5.977E-05 0.37924 0.00017378 0.2488 0.00011401 458.23402448758753 84.813 0.89639 81.149 80.71 81.606 -3.6641 60 25 3 0 0 0 0.053942 4 16607 16561;16605;16607;16654 69.105 46.591 1 12788000 454 12355 255 255 589;590;591;592 591 -0.007495502455867609 AEAQPMAVV 9 Unmodified _AEAQPMAVV_ 0 0 0 nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;ENSG00000140464|ENST00000268058|PML nc|ENSG00000140464|P29590-3|PML nc|ENSG00000140464|P29590-3|PML MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2339782714844 2 458.233853 914.453153 0.15039 6.8914E-05 0.047307 2.1678E-05 0.1977 9.0592E-05 458.23390282709033 85.143 0.83273 81.234 80.837 81.67 -3.9093 61 23 4 0 0 0 0.053942 7 16181 16130;16134;16177;16181;16183;16185;16231 69.105 52.993 1 10812000 455 12355 255 255 593;594;595;596;597;598;599 596 -0.007495502455867609 AEAQPMAVV 9 Unmodified _AEAQPMAVV_ 0 0 0 nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;ENSG00000140464|ENST00000268058|PML nc|ENSG00000140464|P29590-3|PML nc|ENSG00000140464|P29590-3|PML MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2340087890625 2 458.233853 914.453153 0.001745 7.9964E-07 0.39881 0.00018275 0.40055 0.00018355 458.2339993442496 84.925 0.79465 81.213 80.837 81.632 -3.7117 59 22 3 0 0 0 0.053942 5 16212 16160;16208;16212;16257;16297 69.105 51.718 1 10333000 456 12355 255 255 600;601;602;603;604 602 -0.007495502455867609 AEAQRPCV 8 Unmodified _AEAQRPCV_ 0 0 0 PTCH2|p.L1169Cfs*85|1|0.14|ENSG00000117425|chr1:44822522-44822522|G/-|frameshift_variant PTCH2|p.L1169Cfs*85|1|0.14|ENSG00000117425|chr1:44822522-44822522|G/-|frameshift_variant PTCH2|p.L1169Cfs*85|1|0.14|ENSG00000117425|chr1:44822522-44822522|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2162780761719 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 98.038 1 93.941 93.441 94.441 -4.0978 0 0 0 0.21486 1 19248 19248 9.3474 0.75416 1 457 12844 256 256 605 605 -0.023875877025943737 AEAQSEDDD 9 Unmodified _AEAQSEDDD_ 0 0 0 NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant;NOM1|p.E293Kfs*34|1|0.26|ENSG00000146909|chr7:156950610-156950610|G/-|frameshift_variant;ENSG00000146909|ENST00000275820|NOM1 NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2581481933594 2 490.177983 978.341413 NaN NaN NaN NaN NaN NaN NaN 22.543 1 20.755 20.255 21.255 -1.7886 0 0 0 0.23508 1 3585 3585 4.3292 0 1 458 12698 257 257 606 606 -0.14862357859692565 AEARAPRLY 9 Unmodified _AEARAPRLY_ 0 0 0 REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6760864257812 2 523.790715 1045.56688 NaN NaN NaN NaN NaN NaN NaN 58.685 1 55.48 54.98 55.98 -3.2052 0 0 0 0.23508 1 10956 10956 7.9102 1.187 1 + 459 14319 258 258 607 607 0.045916809116761215 AEARDFPKDFL 11 Unmodified _AEARDFPKDFL_ 0 0 0 nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2 nc|ENSG00000232629|P05538-2|HLA-DQB2 nc|ENSG00000232629|P05538-2|HLA-DQB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.235595703125 3 436.890944 1307.651 NaN NaN NaN NaN NaN NaN NaN 30.286 1 28.212 27.712 28.712 -2.0743 0 0 0 0.23689 1 5180 5180 2.8433 0.21205 1 460 7814 259 259 608 608 0.009481672178935696 AEARFQVAS 9 Unmodified _AEARFQVAS_ 0 0 0 ENST00000476463.1_1_7:96337506-96339075:-|nuORF ENST00000476463.1_1_7:96337506-96339075:-|nuORF ENST00000476463.1_1_7:96337506-96339075:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2555236816406 2 489.753798 977.493044 0.42085 0.00020611 0.03945 1.9321E-05 0.4603 0.00022543 489.7537403724144 42.807 0.7337 42.807 42.456 43.19 0 49 20 3 0 0 0 0.10699 2 8034 7983;8034 53.404 26.52 1 6114500 461 10289 260 260 609;610 610 0.003397127493371954 AEARFQVAS 9 Unmodified _AEARFQVAS_ 0 0 0 ENST00000476463.1_1_7:96337506-96339075:-|nuORF ENST00000476463.1_1_7:96337506-96339075:-|nuORF ENST00000476463.1_1_7:96337506-96339075:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25543212890625 2 489.753798 977.493044 0.10706 5.2434E-05 0.20133 9.8602E-05 0.30839 0.00015104 489.7538707350691 45.625 0.69796 42.784 42.439 43.137 -2.8409 42 19 3 0 0 0 0.019191 2 8591 8591;8634 93.166 39.333 1 4599500 462 10289 260 260 611;612 611 0.003397127493371954 AEARFQVAS 9 Unmodified _AEARFQVAS_ 0 0 0 ENST00000476463.1_1_7:96337506-96339075:-|nuORF ENST00000476463.1_1_7:96337506-96339075:-|nuORF ENST00000476463.1_1_7:96337506-96339075:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2552795410156 2 489.753798 977.493044 0.087282 4.2747E-05 0.30135 0.00014759 0.38864 0.00019034 489.7539009900537 45.628 0.65331 42.763 42.449 43.102 -2.8653 43 18 3 0 0 0 0.040189 2 8270 8270;8314 75.571 29.871 1 5447100 463 10289 260 260 613;614 613 0.003397127493371954 AEARFQVAS 9 Unmodified _AEARFQVAS_ 0 0 0 ENST00000476463.1_1_7:96337506-96339075:-|nuORF ENST00000476463.1_1_7:96337506-96339075:-|nuORF ENST00000476463.1_1_7:96337506-96339075:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2549133300781 2 489.753798 977.493044 0.34184 0.00016742 -0.25533 -0.00012505 0.08651 4.2369E-05 489.753660818117 65.538 0.80897 62.08 61.682 62.491 -3.4581 46 22 3 0 0 0 0.13932 1 12222 12222 45.7 3.3871 1 4620100 464 10289 260 260 615 615 0.003397127493371954 AEARFQVAS 9 Unmodified _AEARFQVAS_ 0 0 0 ENST00000476463.1_1_7:96337506-96339075:-|nuORF ENST00000476463.1_1_7:96337506-96339075:-|nuORF ENST00000476463.1_1_7:96337506-96339075:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2551574707031 2 489.753798 977.493044 -0.34997 -0.0001714 0.84001 0.0004114 0.49004 0.00024 489.7541787115941 45.622 0.70071 42.755 42.397 43.097 -2.8666 47 19 3 0 0 0 0.037522 3 8280 8268;8280;8322 76.825 38.851 1 4314200 465 10289 260 260 616;617;618 617 0.003397127493371954 AEARFQVAS 9 Unmodified _AEARFQVAS_ 0 0 0 ENST00000476463.1_1_7:96337506-96339075:-|nuORF ENST00000476463.1_1_7:96337506-96339075:-|nuORF ENST00000476463.1_1_7:96337506-96339075:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2749328613281 2 489.753798 977.493044 0.059078 2.8934E-05 0.000299 1.4644E-07 0.059377 2.908E-05 489.7537908263459 65.35 0.88688 62.067 61.658 62.545 -3.2832 53 25 3 0 0 0 0.094316 1 12227 12227 57.722 7.789 1 4900700 466 10289 260 260 619 619 0.003397127493371954 AEARHCPD 8 Carbamidomethyl (C) _AEARHC(Carbamidomethyl (C))PD_ AEARHC(1)PD AEARHC(44)PD 0 1 0 ENST00000586544.1_1_19:10798449-10798530:+|nuORF ENST00000586544.1_1_19:10798449-10798530:+|nuORF ENST00000586544.1_1_19:10798449-10798530:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7373352050781 2 478.206158 954.397763 0.050966 2.4372E-05 1.6472 0.0007877 1.6982 0.00081207 478.2070187859928 54.077 0.90356 50.942 50.559 51.463 -3.1352 65 25 5 0 0 0 0.21714 1 10030 10030 43.858 13.633 1 15002000 467 11552 261 261 620 620 11 -0.08125963713359852 AEARIEYK 8 Unmodified _AEARIEYK_ 0 0 0 REV__ENSG00000138152|ENST00000260723|BTBD16 REV__ENSG00000138152|ENST00000260723|BTBD16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2641906738281 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 65.05 1 61.592 61.092 62.092 -3.4581 0 0 0 0.22692 1 12167 12167 0.25148 0.12366 1 + 468 16442 262 262 621 621 0.02332883409144415 AEARKGEEA 9 Unmodified _AEARKGEEA_ 0 0 0 REV__nc|ENSG00000129353|Q8IWA5-2|SLC44A2 REV__nc|ENSG00000129353|Q8IWA5-2|SLC44A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2428894042969 2 480.740888 959.467223 0.016596 7.9786E-06 -0.0096674 -4.6475E-06 0.0069291 3.3311E-06 480.7408508008268 24.122 0.62664 22.588 22.328 22.955 -1.5342 54 17 4 0 0 0 0.52396 1 3977 3977 18.146 1.2041 1 32877000 + 469 24032 263 263 622 622 -0.014131814929442044 AEARNLPPL 9 Unmodified _AEARNLPPL_ 0 0 0 COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000111652|ENST00000543155|COPS7A COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26983642578125 2 490.779816 979.545079 0.20572 0.00010096 -0.0025665 -1.2596E-06 0.20315 9.9703E-05 490.7796891472976 31.873 0.87103 31.873 31.458 32.329 0 33 24 2 0 0 0 0.80521 1 5696 5696 15.847 15.847 1 651700 470 710 264 264 623 623 0.054488761630864246 AEARNLPPL 9 Unmodified _AEARNLPPL_ 0 0 0 COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000111652|ENST00000543155|COPS7A COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.779816 979.545079 0.28486 0.0001398 -0.16786 -8.2381E-05 0.117 5.7421E-05 490.7796876882601 33.943 0.96742 31.796 31.427 32.394 -2.1468 -0.051745 -0.00022468 NaN 15.847 46 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1040800 471 710 264 264 0.054488761630864246 AEASCYACR 9 Unmodified _AEASCYACR_ 0 0 0 REV__ENST00000475688.1_1_3:50378843-50379883:-|nuORF REV__ENST00000475688.1_1_3:50378843-50379883:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 489.1817321777344 2 487.196945 972.379336 -0.073959 -3.6033E-05 -1.3594 -0.00066229 -1.4334 -0.00069832 487.1958249073046 93.377 1.1195 93.377 92.851 93.97 0 123 31 5 0 0 0 0.46598 1 18317 18317 0.029283 0 1 11104000 + 472 13840 265 265 624 624 -0.10795841679578189 AEASFGHSR 9 Unmodified _AEASFGHSR_ 0 0 0 REV__ENST00000457671.1_1_1:161860623-161860854:+|nuORF REV__ENST00000457671.1_1_1:161860623-161860854:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2371520996094 2 481.227948 960.441343 NaN NaN NaN NaN NaN NaN NaN 18.569 1 17.258 16.758 17.758 -1.3109 0 0 0 0.22621 1 3022 3022 15.847 1.0089 1 + 473 21860 266 266 625 625 -0.040460309445620624 AEASIFRL 8 Unmodified _AEASIFRL_ 0 0 0 REV__LRRC14B|p.T256Pfs*36|2|0.23|ENSG00000185028|chr5:192298-192298|C/-|frameshift_variant REV__LRRC14B|p.T256Pfs*36|2|0.23|ENSG00000185028|chr5:192298-192298|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75592041015625 2 453.75581 905.497067 -0.01281 -5.8128E-06 0.24754 0.00011232 0.23473 0.00010651 453.75587200903567 69.433 0.70699 69.433 69.143 69.85 0 37 19 3 0 0 0 0.40222 1 13403 13403 32.305 0.18852 1 6911000 + 474 18931 267 267 626 626 0.04053802243049631 AEASLGITGT 10 Unmodified _AEASLGITGT_ 0 0 0 REV__ENSG00000205592|ENST00000454784|MUC19 REV__ENSG00000205592|ENST00000454784|MUC19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2406311035156 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 38.464 1 35.915 35.415 36.415 -2.5491 0 0 0 0.22588 1 7129 7129 10.074 0 1 + 475 19595 268 268 627 627 0.0033318441828669165 AEASRWHR 8 Unmodified _AEASRWHR_ 0 0 0 PKD2L2|p.A379Cfs*12|1|0.25|ENSG00000078795|chr5:137907894-137907895|-/T|frameshift_variant;PKD2L2|p.F477Lfs*7|1|0.39|ENSG00000078795|chr5:137921733-137921733|T/-|frameshift_variant;nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2;nc|ENSG00000078795|Q9NZM6-4|PKD2L2;nc|ENSG00000078795|Q9NZM6-3|PKD2L2 PKD2L2|p.A379Cfs*12|1|0.25|ENSG00000078795|chr5:137907894-137907895|-/T|frameshift_variant PKD2L2|p.A379Cfs*12|1|0.25|ENSG00000078795|chr5:137907894-137907895|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.1759338378906 3 338.173897 1011.49986 NaN NaN NaN NaN NaN NaN NaN 19.931 1 18.606 18.106 19.106 -1.3251 0 0 0 0.21486 1 3069 3069 3.5965 0 1 476 1586 269 269 628 628 -0.005429295794328937 AEASSPVSAS 10 Unmodified _AEASSPVSAS_ 0 0 0 nc|ENSG00000172403|Q9UMS6-5|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76763916015625 2 453.214172 904.413791 -0.51716 -0.00023439 0.39704 0.00017994 -0.12013 -5.4444E-05 453.2144034583701 36.769 0.97293 34.3 33.869 34.841 -2.4688 67 27 3 0 0 0 0.71097 1 6884 6884 10.074 0.72649 1 2480800 477 6219 270 270 629 629 -0.042239789954578555 AEASSSYVC 9 Unmodified _AEASSSYVC_ 0 0 0 REV__ENSG00000185775|ENST00000332857|SPATA31A6 REV__ENSG00000185775|ENST00000332857|SPATA31A6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2391662597656 2 458.689475 915.364398 0.63537 0.00029144 0.35825 0.00016432 0.99362 0.00045576 458.68961043775533 100.73 0.74346 100.73 100.41 101.15 0 46 20 3 0 0 0 0.54076 1 19770 19770 34.102 5.6156 1 5840400 + 478 18986 271 271 630 630 -0.09667010275916255 AEASSSYVC 9 Unmodified _AEASSSYVC_ 0 0 0 REV__ENSG00000185775|ENST00000332857|SPATA31A6 REV__ENSG00000185775|ENST00000332857|SPATA31A6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2386779785156 2 458.689475 915.364398 0.75272 0.00034527 0.27974 0.00012831 1.0325 0.00047358 458.68958190531987 104.96 0.80887 100.91 100.45 101.26 -4.0543 43 22 3 0 0 0 0.54076 1 20211 20211 34.102 5.6156 1 4629500 + 479 18986 271 271 631 631 -0.09667010275916255 AEATAQLMS 9 Unmodified _AEATAQLMS_ 0 0 0 REV__ATL1|p.M371Wfs*29|1|0.04|ENSG00000198513|chr14:50623234-50623234|A/-|frameshift_variant REV__ATL1|p.M371Wfs*29|1|0.04|ENSG00000198513|chr14:50623234-50623234|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53289794921875 2 461.220943 920.427332 NaN NaN NaN NaN NaN NaN NaN 65.807 1 65.807 65.307 66.307 0 0 0 0 0.23508 1 12696 12696 7.2892 0.56607 1 + 480 13149 272 272 632 632 -0.03606444487877525 AEATPMLKT 9 Unmodified _AEATPMLKT_ 0 0 0 ENSG00000197872|ENST00000381323|CYRIA;ENST00000469507.1_1_2:16742256-16742729:-|nuORF;ENST00000517801.5_1_8:130863079-130874553:-|nuORF;nc|ENSG00000153310|Q9NUQ9-2|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF;ENSG00000153310|ENST00000694912|CYRIB ENSG00000197872|ENST00000381323|CYRIA ENSG00000197872|ENST00000381323|CYRIA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25445556640625 2 481.254785 960.495018 0.15059 7.2473E-05 -0.36129 -0.00017387 -0.2107 -0.0001014 481.25456868600253 50.831 0.59092 50.831 50.504 51.094 0 27 16 2 0 0 0 0.05838 2 9614 9614;9620 67.838 25.86 1 2857300 481 7408 273 273 633;634 633 0.013190054429401243 AEATPMLKT 9 Unmodified _AEATPMLKT_ 0 0 0 ENSG00000197872|ENST00000381323|CYRIA;ENST00000469507.1_1_2:16742256-16742729:-|nuORF;ENST00000517801.5_1_8:130863079-130874553:-|nuORF;nc|ENSG00000153310|Q9NUQ9-2|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF;ENSG00000153310|ENST00000694912|CYRIB ENSG00000197872|ENST00000381323|CYRIA ENSG00000197872|ENST00000381323|CYRIA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2549133300781 2 481.254785 960.495018 -0.18083 -8.7028E-05 0.13716 6.6007E-05 -0.043678 -2.102E-05 481.2548091254377 53.496 0.5892 50.613 50.283 50.872 -2.8837 31 16 3 0 0 0 0.10162 2 10167 10167;10205 55.235 11.376 1 4481100 482 7408 273 273 635;636 635 0.013190054429401243 AEATPMLKT 9 Unmodified _AEATPMLKT_ 0 0 0 ENSG00000197872|ENST00000381323|CYRIA;ENST00000469507.1_1_2:16742256-16742729:-|nuORF;ENST00000517801.5_1_8:130863079-130874553:-|nuORF;nc|ENSG00000153310|Q9NUQ9-2|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF;ENSG00000153310|ENST00000694912|CYRIB ENSG00000197872|ENST00000381323|CYRIA ENSG00000197872|ENST00000381323|CYRIA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2546081542969 2 481.254785 960.495018 0.084111 4.0479E-05 -0.34199 -0.00016458 -0.25788 -0.0001241 481.25468184900694 53.752 0.87826 50.654 50.029 50.907 -3.0972 38 24 3 0 0 0 0.11282 3 9877 9845;9877;9921 51.415 7.5569 1 3934500 483 7408 273 273 637;638;639 638 0.013190054429401243 AEATPMLKT 9 Unmodified _AEATPMLKT_ 0 0 0 ENSG00000197872|ENST00000381323|CYRIA;ENST00000469507.1_1_2:16742256-16742729:-|nuORF;ENST00000517801.5_1_8:130863079-130874553:-|nuORF;nc|ENSG00000153310|Q9NUQ9-2|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF;ENSG00000153310|ENST00000694912|CYRIB ENSG00000197872|ENST00000381323|CYRIA ENSG00000197872|ENST00000381323|CYRIA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2549133300781 2 481.254785 960.495018 -0.11019 -5.3029E-05 0.58677 0.00028239 0.47658 0.00022936 481.25487723800796 53.725 0.58831 50.63 50.374 50.963 -3.0954 35 16 3 0 0 0 0.11282 3 9915 9899;9915;9958 51.415 7.5569 1 2842800 484 7408 273 273 640;641;642 641 0.013190054429401243 AEATSEKIA 9 Unmodified _AEATSEKIA_ 0 0 0 tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23907470703125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 70.559 1 66.979 66.479 67.479 -3.5798 0 0 0 0.21844 1 13299 13299 18.146 2.2992 1 485 25888 274 274 643 643 0.0033318441827532297 AEATVVLVGC 10 Unmodified _AEATVVLVGC_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;ENST00000425141.5_1_2:220498093-220506447:+|nuORF nc|ENSG00000164889|P04920-2|SLC4A2 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2545471191406 2 481.254785 960.495018 0.15059 7.2473E-05 -0.36129 -0.00017387 -0.2107 -0.0001014 481.25456868600253 50.831 0.59092 50.831 50.504 51.094 0 27 16 2 0 0 0 0.40256 1 9661 9661 30.637 2.142 1 2857300 486 5572 275 275 644 644 0.013190054429287557 AEATVVLVGC 10 Unmodified _AEATVVLVGC_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;ENST00000425141.5_1_2:220498093-220506447:+|nuORF nc|ENSG00000164889|P04920-2|SLC4A2 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2390441894531 2 481.254785 960.495018 -0.11019 -5.3029E-05 0.58677 0.00028239 0.47658 0.00022936 481.25487723800796 53.725 0.58831 50.63 50.374 50.963 -3.0954 35 16 3 0 0 0 0.71097 1 9883 9883 10.074 1.3285 1 2842800 487 5572 275 275 645 645 0.013190054429287557 AEAVAAVQR 9 Unmodified _AEAVAAVQR_ 0 0 0 ENST00000562475.5_1_16:28929220-28935949:-|nuORF;ENST00000564579.1_1_16:28931058-28935949:-|nuORF;ENST00000570030.1_1_16:28931058-28936514:-|nuORF;ENST00000561803.5_1_16:28927516-28936514:-|nuORF;RABEP2|p.P206Rfs*8|1|0.21|ENSG00000177548|chr16:28914513-28914513|G/-|frameshift_variant;ENST00000562590.5_1_16:28922190-28936514:-|nuORF;nc|ENSG00000177548|Q9H5N1-2|RABEP2;ENSG00000177548|ENST00000358201|RABEP2 ENST00000562475.5_1_16:28929220-28935949:-|nuORF ENST00000562475.5_1_16:28929220-28935949:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2243957519531 2 457.756341 913.498129 -0.35986 -0.00016473 0.71342 0.00032657 0.35356 0.00016184 457.75657189515135 35.117 0.66833 32.723 32.318 32.987 -2.3938 25 18 2 0 0 0 0.45788 1 6465 6465 39.95 1.9757 1 1073500 488 6519 276 276 646 646 0.03792016611953386 AEAVANCYS 9 Unmodified _AEAVANCYS_ 0 0 0 REV__ENSG00000168575|ENST00000520262|SLC20A2 REV__ENSG00000168575|ENST00000520262|SLC20A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700439453125 3 309.800737 926.380382 -0.32741 -0.00010143 0.82767 0.00025641 0.50026 0.00015498 309.80099979120064 107.91 0.65781 107.91 107.62 108.28 0 30 18 2 0 0 0 0.84094 1 21232 21232 9.544 2.4423 1 2065700 + 489 18037 277 277 647 647 -0.08575304039027287 AEAVANCYS 9 Unmodified _AEAVANCYS_ 0 0 0 REV__ENSG00000168575|ENST00000520262|SLC20A2 REV__ENSG00000168575|ENST00000520262|SLC20A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1700439453125 3 309.800737 926.380382 -0.099206 -3.0734E-05 0.78559 0.00024338 0.68639 0.00021264 309.80093212814813 112.38 0.69473 108.11 107.7 108.39 -4.2725 34 19 2 0 0 0 0.8606 1 21644 21644 7.1017 2.2047 1 1232400 + 490 18037 277 277 648 648 -0.08575304039027287 AEAVATTNSL 10 Unmodified _AEAVATTNSL_ 0 0 0 REV__ENSG00000167553|ENST00000301072|TUBA1C REV__ENSG00000167553|ENST00000301072|TUBA1C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.255126953125 2 488.750921 975.48729 0.20745 0.00010139 -0.34375 -0.00016801 -0.13629 -6.6614E-05 488.7507332804082 35.659 0.79086 35.659 35.134 35.925 0 62 22 4 0 0 0 0.48672 1 6523 6523 25.399 2.663 1 19977000 + 491 17939 278 278 649 649 -0.0014343055299832486 AEAVEPEEM 9 Unmodified _AEAVEPEEM_ 0 0 0 ENSG00000099203|ENST00000214869|TMED1 ENSG00000099203|ENST00000214869|TMED1 ENSG00000099203|ENST00000214869|TMED1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 335.17169189453125 3 335.479552 1003.41683 -0.44575 -0.00014954 2.0847 0.00069936 1.6389 0.00054982 335.48015459812234 51.591 0.47576 48.709 48.493 48.969 -2.8824 20 13 2 0 0 0 0.59016 1 9832 9832 0.37959 0 1 596290 492 1881 279 279 650 650 -0.08474471932959204 AEAVFASEV 9 Unmodified _AEAVFASEV_ 0 0 0 FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant;ENSG00000105202|ENST00000221801|FBL;ENSG00000188573|ENST00000338333|FBLL1 FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.54107666015625 2 461.729458 921.444362 0.33169 0.00015315 -0.048293 -2.2298E-05 0.28339 0.00013085 461.72935875026184 98.28 1.2476 98.28 97.81 99.058 0 98 35 4 0 0 0 0.09143 1 19351 19351 58.679 12.658 1 61261000 493 2286 280 280 651 651 -0.019502006104175962 AEAVFASEV 9 Unmodified _AEAVFASEV_ 0 0 0 FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant;ENSG00000105202|ENST00000221801|FBL;ENSG00000188573|ENST00000338333|FBLL1 FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.52777099609375 2 461.729458 921.444362 0.52357 0.00024175 -0.14539 -6.7131E-05 0.37818 0.00017462 461.7293530939741 102.39 1.9329 98.371 97.902 99.835 -4.0212 136 54 5 0 0 0 2.0192E-05 1 19640 19640 67.187 35.459 1 102200000 494 2286 280 280 652 652 -0.019502006104175962 AEAVFASEV 9 Unmodified _AEAVFASEV_ 0 0 0 FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant;ENSG00000105202|ENST00000221801|FBL;ENSG00000188573|ENST00000338333|FBLL1 FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.729458 921.444362 -0.11478 -5.3E-05 0.39126 0.00018065 0.27647 0.00012765 461.72959304783893 102.58 1.7294 98.393 97.89 99.619 -4.1861 0.027452 0.00026929 NaN 67.187 127 49 5 NaN NaN NaN NaN 0 NaN NaN 0 92310000 495 2286 280 280 -0.019502006104175962 AEAVFASEV 9 Unmodified _AEAVFASEV_ 0 0 0 FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant;ENSG00000105202|ENST00000221801|FBL;ENSG00000188573|ENST00000338333|FBLL1 FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.729458 921.444362 0.23659 0.00010924 0.090571 4.182E-05 0.32716 0.00015106 461.72943010511426 102.74 1.4 98.418 97.874 99.274 -4.3208 0.052627 -8.3775E-06 NaN 67.187 114 39 4 NaN NaN NaN NaN 0 NaN NaN 0 97576000 496 2286 280 280 -0.019502006104175962 AEAVFNILPAP 11 Unmodified _AEAVFNILPAP_ 0 0 0 ENST00000518797.5_2_5:149781626-149781806:-|nuORF ENST00000518797.5_2_5:149781626-149781806:-|nuORF ENST00000518797.5_2_5:149781626-149781806:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2128601074219 3 381.213246 1140.61791 -0.40993 -0.00015627 0.74756 0.00028498 0.33762 0.00012871 381.21348003100957 17.962 0.31019 16.689 16.52 16.831 -1.2722 13 8 2 0 0 0 0.7348 1 2662 2662 4.7159 0 1 412540 497 10810 281 281 653 653 0.05322585165868077 AEAVFTLR 8 Unmodified _AEAVFTLR_ 0 0 0 REV__nc|ENSG00000089250|P29475-2|NOS1 REV__nc|ENSG00000089250|P29475-2|NOS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7558288574219 2 453.75581 905.497067 -0.01281 -5.8128E-06 0.24754 0.00011232 0.23473 0.00010651 453.75587200903567 69.433 0.70699 69.433 69.143 69.85 0 37 19 3 0 0 0 0.27447 1 13455 13455 37.974 0 1 6911000 + 498 14528 282 282 654 654 0.04053802243061 AEAVFTLR 8 Unmodified _AEAVFTLR_ 0 0 0 REV__nc|ENSG00000089250|P29475-2|NOS1 REV__nc|ENSG00000089250|P29475-2|NOS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7559509277344 2 453.75581 905.497067 -0.22721 -0.0001031 0.46366 0.00021039 0.23645 0.00010729 453.7560703207879 72.519 0.64243 69.209 68.884 69.526 -3.3107 37 17 3 0 0 0 0.27447 1 14141 14141 37.974 0 1 5001500 + 499 14528 282 282 655 655 0.04053802243061 AEAVFTLR 8 Unmodified _AEAVFTLR_ 0 0 0 REV__nc|ENSG00000089250|P29475-2|NOS1 REV__nc|ENSG00000089250|P29475-2|NOS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7560119628906 2 453.75581 905.497067 0.20703 9.394E-05 0.19907 9.033E-05 0.4061 0.00018427 453.75588621040964 72.882 0.61575 69.254 68.873 69.489 -3.6275 34 16 3 0 0 0 0.27447 1 13766 13766 37.974 0 1 5055200 + 500 14528 282 282 656 656 0.04053802243061 AEAVFTLR 8 Unmodified _AEAVFTLR_ 0 0 0 REV__nc|ENSG00000089250|P29475-2|NOS1 REV__nc|ENSG00000089250|P29475-2|NOS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75531005859375 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 78.251 1 74.592 74.092 75.092 -3.6588 0 0 0 0.20761 1 14906 14906 19.257 1.122 1 + 501 14528 282 282 657 657 0.04053802243061 AEAVFTLR 8 Unmodified _AEAVFTLR_ 0 0 0 REV__nc|ENSG00000089250|P29475-2|NOS1 REV__nc|ENSG00000089250|P29475-2|NOS1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.75581 905.497067 0.32729 0.00014851 -0.036076 -1.637E-05 0.29122 0.00013214 453.755818486156 72.822 0.66272 69.284 68.914 69.577 -3.5385 -0.01126 -0.00025447 NaN 37.974 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6032600 + 502 14528 282 282 0.04053802243061 AEAVLGEAL 9 Unmodified _AEAVLGEAL_ 0 0 0 CON__P50448 CON__P50448 CON__P50448 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22857666015625 2 436.739825 871.465098 -0.084972 -3.7111E-05 0.21747 9.4979E-05 0.1325 5.7868E-05 436.73985943712376 92.51 1.1214 88.702 88.174 89.296 -3.8083 70 32 3 0 0 0 0.58804 1 17626 17626 13.906 0.39817 1 8453600 + 503 674 283 283 658 658 0.024223897692422725 AEAVLQGRA 9 Unmodified _AEAVLQGRA_ 0 0 0 ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L;BCL9L|p.P894Lfs*17|1|0.29|ENSG00000186174|chr11:118901062-118901062|G/-|frameshift_variant;nc|ENSG00000186174|Q86UU0-3|BCL9L;BCL9L|p.P1355Lfs*6|1|0.23|ENSG00000186174|chr11:118898851-118898851|G/-|frameshift_variant;BCL9L|p.P1249Lfs*32|1|0.58|ENSG00000186174|chr11:118899171-118899171|C/-|frameshift_variant;BCL9L|p.P1198Lfs*5|3|0.34|ENSG00000186174|chr11:118899327-118899327|C/-|frameshift_variant;BCL9L|p.P1127Hfs*21|1|0.43|ENSG00000186174|chr11:118899943-118899943|G/-|frameshift_variant;BCL9L|p.G481Afs*21|1|0.4|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant;BCL9L|p.P483Rfs*19|1|0.35|ENSG00000186174|chr11:118902295-118902295|G/-|frameshift_variant;BCL9L|p.Q452Sfs*11|3|0.43|ENSG00000186174|chr11:118902389-118902389|G/-|frameshift_variant;BCL9L|p.G442Afs*21|2|0.19|ENSG00000186174|chr11:118902418-118902418|C/-|frameshift_variant;BCL9L|p.P449Lfs*14|1|0.26|ENSG00000186174|chr11:118902397-118902397|G/-|frameshift_variant;BCL9L|p.E397Rfs*22|1|0.71|ENSG00000186174|chr11:118902554-118902555|-/T|frameshift_variant;BCL9L|p.P288Rfs*4|1|0.38|ENSG00000186174|chr11:118902880-118902880|G/-|frameshift_variant ENSG00000186174|ENST00000683865|BCL9L ENSG00000186174|ENST00000683865|BCL9L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2286071777344 2 457.756341 913.498129 0.27325 0.00012508 -0.29541 -0.00013523 -0.022167 -1.0147E-05 457.75620346753453 32.933 0.52184 32.933 32.607 33.129 0 24 14 3 0 0 0 0.40905 1 5995 5995 34.402 5.9149 1 2010400 504 7040 284 284 659 659 0.03792016611953386 AEAVLQGRA 9 Unmodified _AEAVLQGRA_ 0 0 0 ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L;BCL9L|p.P894Lfs*17|1|0.29|ENSG00000186174|chr11:118901062-118901062|G/-|frameshift_variant;nc|ENSG00000186174|Q86UU0-3|BCL9L;BCL9L|p.P1355Lfs*6|1|0.23|ENSG00000186174|chr11:118898851-118898851|G/-|frameshift_variant;BCL9L|p.P1249Lfs*32|1|0.58|ENSG00000186174|chr11:118899171-118899171|C/-|frameshift_variant;BCL9L|p.P1198Lfs*5|3|0.34|ENSG00000186174|chr11:118899327-118899327|C/-|frameshift_variant;BCL9L|p.P1127Hfs*21|1|0.43|ENSG00000186174|chr11:118899943-118899943|G/-|frameshift_variant;BCL9L|p.G481Afs*21|1|0.4|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant;BCL9L|p.P483Rfs*19|1|0.35|ENSG00000186174|chr11:118902295-118902295|G/-|frameshift_variant;BCL9L|p.Q452Sfs*11|3|0.43|ENSG00000186174|chr11:118902389-118902389|G/-|frameshift_variant;BCL9L|p.G442Afs*21|2|0.19|ENSG00000186174|chr11:118902418-118902418|C/-|frameshift_variant;BCL9L|p.P449Lfs*14|1|0.26|ENSG00000186174|chr11:118902397-118902397|G/-|frameshift_variant;BCL9L|p.E397Rfs*22|1|0.71|ENSG00000186174|chr11:118902554-118902555|-/T|frameshift_variant;BCL9L|p.P288Rfs*4|1|0.38|ENSG00000186174|chr11:118902880-118902880|G/-|frameshift_variant ENSG00000186174|ENST00000683865|BCL9L ENSG00000186174|ENST00000683865|BCL9L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2315368652344 2 457.756341 913.498129 0.11619 5.3186E-05 0.018117 8.293E-06 0.13431 6.1479E-05 457.75628265694263 35.115 0.4871 32.862 32.532 33.019 -2.2527 23 13 2 0 0 0 0.70212 1 6203 6203 27.629 5.8822 1 1381300 505 7040 284 284 660 660 0.03792016611953386 AEAVLQGRA 9 Unmodified _AEAVLQGRA_ 0 0 0 ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L;BCL9L|p.P894Lfs*17|1|0.29|ENSG00000186174|chr11:118901062-118901062|G/-|frameshift_variant;nc|ENSG00000186174|Q86UU0-3|BCL9L;BCL9L|p.P1355Lfs*6|1|0.23|ENSG00000186174|chr11:118898851-118898851|G/-|frameshift_variant;BCL9L|p.P1249Lfs*32|1|0.58|ENSG00000186174|chr11:118899171-118899171|C/-|frameshift_variant;BCL9L|p.P1198Lfs*5|3|0.34|ENSG00000186174|chr11:118899327-118899327|C/-|frameshift_variant;BCL9L|p.P1127Hfs*21|1|0.43|ENSG00000186174|chr11:118899943-118899943|G/-|frameshift_variant;BCL9L|p.G481Afs*21|1|0.4|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant;BCL9L|p.P483Rfs*19|1|0.35|ENSG00000186174|chr11:118902295-118902295|G/-|frameshift_variant;BCL9L|p.Q452Sfs*11|3|0.43|ENSG00000186174|chr11:118902389-118902389|G/-|frameshift_variant;BCL9L|p.G442Afs*21|2|0.19|ENSG00000186174|chr11:118902418-118902418|C/-|frameshift_variant;BCL9L|p.P449Lfs*14|1|0.26|ENSG00000186174|chr11:118902397-118902397|G/-|frameshift_variant;BCL9L|p.E397Rfs*22|1|0.71|ENSG00000186174|chr11:118902554-118902555|-/T|frameshift_variant;BCL9L|p.P288Rfs*4|1|0.38|ENSG00000186174|chr11:118902880-118902880|G/-|frameshift_variant ENSG00000186174|ENST00000683865|BCL9L ENSG00000186174|ENST00000683865|BCL9L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23040771484375 2 457.756341 913.498129 0.32583 0.00014915 -0.30375 -0.00013904 0.022083 1.0109E-05 457.7561738278022 35.115 0.48079 32.838 32.556 33.037 -2.2766 30 13 3 0 0 0 0.62921 1 6142 6142 30.637 2.1497 1 1474200 506 7040 284 284 661 661 0.03792016611953386 AEAVTGRA 8 Unmodified _AEAVTGRA_ 0 0 0 REV__ENST00000515740.5_1_4:926277-945448:+|nuORF REV__ENST00000515740.5_1_4:926277-945448:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.70892333984375 2 387.70886 773.403166 0.67455 0.00026153 -1.3843 -0.0005367 -0.70973 -0.00027517 387.7083497446999 23.855 0.69827 22.301 22.012 22.71 -1.5532 39 19 3 0 0 0 0.58432 1 4108 4108 23.148 3.8914 1 3029500 + 507 22592 285 285 662 662 0.007400831407608166 AEAVVEAMDF 10 Unmodified _AEAVVEAMDF_ 0 0 0 ENSG00000104522|ENST00000425753|GFUS;ENST00000528920.5_1_8:144695082-144695843:-|nuORF;ENST00000531473.5_1_8:144695082-144696778:-|nuORF ENSG00000104522|ENST00000425753|GFUS ENSG00000104522|ENST00000425753|GFUS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.28466796875 2 541.247157 1080.47976 NaN NaN NaN NaN NaN NaN NaN 44.4 1 41.61 41.11 42.11 -2.79 0 0 0 0.22583 1 8341 8341 13.906 3.0821 1 508 2241 286 286 663 663 -0.0572590614492583 AEAYADLVKQA 11 Unmodified _AEAYADLVKQA_ 0 0 0 USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant;USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11 USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2710571289062 2 589.806228 1177.5979 0.31173 0.00018386 -0.086472 -5.1002E-05 0.22526 0.00013286 589.8060488568384 86.085 0.60081 86.085 85.824 86.424 0 36 16 3 0 0 0 0.065995 1 16800 16800 112.04 70.086 1 3790300 509 2117 287 287 664 664 0.016207894352419316 AEAYADLVKQA 11 Unmodified _AEAYADLVKQA_ 0 0 0 USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant;USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11 USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2640991210938 2 589.806228 1177.5979 0.37177 0.00021927 -0.13569 -8.0028E-05 0.23608 0.00013924 589.8061645901009 89.94 0.67635 86.08 85.727 86.404 -3.8595 46 18 3 0 0 0 0.17581 1 17589 17589 76.416 37.801 1 7299600 510 2117 287 287 665 665 0.016207894352419316 AEAYADLVKQA 11 Unmodified _AEAYADLVKQA_ 0 0 0 USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant;USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11 USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2517700195312 2 589.806228 1177.5979 0.77449 0.0004568 -0.5664 -0.00033407 0.2081 0.00012274 589.8058497412557 90.159 0.63657 86.115 85.773 86.41 -4.0443 45 17 3 0 0 0 0.14514 1 17158 17158 87.123 46.884 1 6419600 511 2117 287 287 666 666 0.016207894352419316 AEAYADLVKQA 11 Unmodified _AEAYADLVKQA_ 0 0 0 USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant;USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11 USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2636108398438 2 589.806228 1177.5979 0.18937 0.00011169 0.11415 6.7324E-05 0.30352 0.00017902 589.8062403647535 89.816 0.69438 86.038 85.703 86.397 -3.7779 47 19 3 0 0 0 0.10172 1 17231 17231 68.76 41.537 1 6963700 512 2117 287 287 667 667 0.016207894352419316 AEAYPEDEGTY 11 Unmodified _AEAYPEDEGTY_ 0 0 0 nc|ENSG00000155657|Q8WZ42-6|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.M4154Nfs*4|1|0.21|ENSG00000155657|chr2:178739821-178739822|-/T|frameshift_variant;TTN|p.T4116Sfs*25|1|0.04|ENSG00000155657|chr2:178739937-178739938|-/CTATTATATATGAGGAA|frameshift_variant;TTN|p.P4036Qfs*14|1|0.19|ENSG00000155657|chr2:178740175-178740175|G/-|frameshift_variant;TTN|p.I3592Lfs*36|1|0.25|ENSG00000155657|chr2:178741508-178741508|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant nc|ENSG00000155657|Q8WZ42-6|TTN;ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7521362304688 2 622.751315 1243.48808 NaN NaN NaN NaN NaN NaN NaN 52.056 1 49.004 48.504 49.504 -3.0517 0 0 0 0.23324 1 9601 9601 5.7319 0.43497 1 513 5053;26536;12390 288 288 668 668 -0.12392680694597402 AECEKSFNC 9 Carbamidomethyl (C) _AEC(Carbamidomethyl (C))EKSFNC_ AEC(0.999)EKSFNC(0.001) AEC(33)EKSFNC(-33) 0 1 0 ENSG00000170265|ENST00000610704|ZNF282 ENSG00000170265|ENST00000610704|ZNF282 ENSG00000170265|ENST00000610704|ZNF282 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7756958007812 2 544.212792 1086.41103 0.38001 0.00020681 -0.37581 -0.00020452 0.0041984 2.2848E-06 544.2126043589002 28.433 0.41381 28.433 28.147 28.561 0 19 11 2 0 0 0 0.17734 1 5019 5019 40.239 9.6027 2 1039400 514 6052 289 289 669 669 8 -0.12871893716283012 AECEKSFNC 9 Carbamidomethyl (C) _AEC(Carbamidomethyl (C))EKSFNC_ AEC(1)EKSFNC AEC(56)EKSFNC(-56) 0 1 0 ENSG00000170265|ENST00000610704|ZNF282 ENSG00000170265|ENST00000610704|ZNF282 ENSG00000170265|ENST00000610704|ZNF282 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7716674804688 2 544.212792 1086.41103 0.7115 0.00038721 -0.95827 -0.0005215 -0.24677 -0.0001343 544.2124703867155 30.221 0.59233 28.104 27.843 28.435 -2.1167 37 16 3 0 0 0 0.05838 1 5468 5468 67.838 35.052 2 1619100 515 6052 289 289 670 670 8 -0.12871893716283012 AECFQCCPPP 10 Unmodified _AECFQCCPPP_ 0 0 0 REV__nc|ENSG00000182871|P39060|COL18A1 REV__nc|ENSG00000182871|P39060|COL18A1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7671508789062 2 547.70883 1093.40311 NaN NaN NaN NaN NaN NaN NaN 71.567 1 68.318 67.818 68.818 -3.2492 0 0 0 0.22588 1 13936 13936 7.2892 2.0586 1 + 516 24201 290 290 671 671 -0.13985744237425024 AECGKNFG 8 Unmodified _AECGKNFG_ 0 0 0 nc|ENSG00000214022|Q9BWE0|REPIN1;ENSG00000214022|ENST00000489432|REPIN1 nc|ENSG00000214022|Q9BWE0|REPIN1 nc|ENSG00000214022|Q9BWE0|REPIN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 413.2183837890625 2 413.18162 824.348688 NaN NaN NaN NaN NaN NaN NaN 63.447 1 63.447 62.947 63.947 0 0 0 0 0.21486 1 12200 12200 5.2307 0 1 517 7717 291 291 672 672 -0.07051252002304409 AECRVTLQ 8 Unmodified _AECRVTLQ_ 0 0 0 REV__ENSG00000179071|ENST00000316398|CCDC89 REV__ENSG00000179071|ENST00000316398|CCDC89 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2390441894531 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 73.506 1 69.83 69.33 70.33 -3.6764 0 0 0 0.21486 1 13890 13890 10.824 1.4408 1 + 518 18637 292 292 673 673 -0.0031903201407885717 AECSGHSPAG 10 Unmodified _AECSGHSPAG_ 0 0 0 nc|ENSG00000132517|Q9NWF4-2|SLC52A1;ENST00000573674.1_1_17:4937400-4937901:-|nuORF nc|ENSG00000132517|Q9NWF4-2|SLC52A1 nc|ENSG00000132517|Q9NWF4-2|SLC52A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2255859375 2 458.184891 914.35523 NaN NaN NaN NaN NaN NaN NaN 73.826 1 73.826 73.326 74.326 0 0 0 0 2.8426 1 14325 14325 0.84494 0 1 519 11439 293 293 674 674 -0.10537358841600053 AECVRPAVA 9 Unmodified _AECVRPAVA_ 0 0 0 REV__ENST00000361317.6_1_20:62688688-62688904:+|nuORF REV__ENST00000361317.6_1_20:62688688-62688904:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2387390136719 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 97.322 1 93.224 92.724 93.724 -4.0978 0 0 0 0.23508 1 19094 19094 11.64 0.81637 1 + 520 20880 294 294 675 675 0.003732718485252917 AECWQNMY 8 Unmodified _AECWQNMY_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6865844726562 2 522.69932 1043.38409 -0.60628 -0.0003169 -1.8453 -0.00096453 -2.4516 -0.0012814 523.2010796024337 45.866 0.54792 43 42.796 43.344 -2.8653 66 15 6 0 0 0 8448 1 8379 8379 0.62683 0 1 5282500 521 4201 295 295 676 676 -0.13586957536813316 AEDAAASASVA 11 Unmodified _AEDAAASASVA_ 0 0 0 nc|ENSG00000121644|Q9BSY9-2|DESI2;ENSG00000121644|ENST00000302550|DESI2 nc|ENSG00000121644|Q9BSY9-2|DESI2 nc|ENSG00000121644|Q9BSY9-2|DESI2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7765808105469 2 481.724904 961.435254 0.24013 0.00011568 -0.1876 -9.0372E-05 0.052529 2.5305E-05 481.7246819525058 27.31 0.38694 25.555 25.443 25.83 -1.7552 14 10 2 0 0 0 0.89764 1 4603 4603 17.113 7.7655 1 715190 522 3186 296 296 677 677 -0.047005939667656094 AEDAHSAQK 9 Unmodified _AEDAHSAQK_ 0 0 0 ENST00000451107.3_1_12:95475298-95611245:-|nuORF;ENSG00000180263|ENST00000343958|FGD6 ENST00000451107.3_1_12:95475298-95611245:-|nuORF ENST00000451107.3_1_12:95475298-95611245:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7248229980469 2 478.725238 955.435923 -0.02311 -1.1063E-05 -0.43527 -0.00020837 -0.45838 -0.00021944 478.724953224567 28.846 1.2893 28.846 28.252 29.541 0 66 36 3 0 0 0 0.6329 1 5105 5105 10.824 10.824 1 2806300 523 6664 297 297 678 678 -0.043577545270409246 AEDAHSAQK 9 Unmodified _AEDAHSAQK_ 0 0 0 ENST00000451107.3_1_12:95475298-95611245:-|nuORF;ENSG00000180263|ENST00000343958|FGD6 ENST00000451107.3_1_12:95475298-95611245:-|nuORF ENST00000451107.3_1_12:95475298-95611245:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73968505859375 2 478.725238 955.435923 NaN NaN NaN NaN NaN NaN NaN 30.624 1 28.731 28.231 29.231 -1.8928 0 0 0 0.23508 1 5258 5258 10.824 2.2306 1 524 6664 297 297 679 679 -0.043577545270409246 AEDAKLRL 8 Unmodified _AEDAKLRL_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2386779785156 2 458.266542 914.51853 NaN NaN NaN NaN NaN NaN NaN 77.256 1 73.793 73.293 74.293 -3.4633 0 0 0 0.2074 1 15079 15079 19.439 3.5918 1 525 2300 298 298 680 680 0.05785187271760606 AEDAKLRL 8 Unmodified _AEDAKLRL_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.238525390625 2 458.266542 914.51853 NaN NaN NaN NaN NaN NaN NaN 77.667 1 73.901 73.401 74.401 -3.7664 0 0 0 0.2074 1 14716 14716 19.439 4.8573 1 526 2300 298 298 681 681 0.05785187271760606 AEDAKPKD 8 Unmodified _AEDAKPKD_ 0 0 0 ENSG00000136535|ENST00000389554|TBR1;nc|ENSG00000136535|Q16650-2|TBR1 ENSG00000136535|ENST00000389554|TBR1 ENSG00000136535|ENST00000389554|TBR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2173156738281 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 49.124 1 46.117 45.617 46.617 -3.0068 0 0 0 0.21486 1 9005 9005 9.3474 0 1 527 4018 299 299 682 682 -0.017353712702401936 AEDAKPKD 8 Unmodified _AEDAKPKD_ 0 0 0 ENSG00000136535|ENST00000389554|TBR1;nc|ENSG00000136535|Q16650-2|TBR1 ENSG00000136535|ENST00000389554|TBR1 ENSG00000136535|ENST00000389554|TBR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23236083984375 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 49.145 1 46.139 45.639 46.639 -3.0068 0 0 0 0.21486 1 9010 9010 9.3474 0 1 528 4018 299 299 683 683 -0.017353712702401936 AEDALSIRS 9 Unmodified _AEDALSIRS_ 0 0 0 nc|ENSG00000162522|Q9P206-4|NHSL3;KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant;nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522 nc|ENSG00000162522|Q9P206-4|NHSL3 nc|ENSG00000162522|Q9P206-4|NHSL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25164794921875 2 481.251089 960.487624 0.040863 1.9665E-05 1.5217 0.00073231 1.5625 0.00075198 481.2518469026552 24.939 0.33745 24.939 24.781 25.118 0 14 9 2 0 0 0 0.36931 1 4296 4296 27.629 1.2875 1 559130 529 5340 300 300 684 684 0.005799891668630153 AEDALSIRS 9 Unmodified _AEDALSIRS_ 0 0 0 nc|ENSG00000162522|Q9P206-4|NHSL3;KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant;nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522 nc|ENSG00000162522|Q9P206-4|NHSL3 nc|ENSG00000162522|Q9P206-4|NHSL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2512512207031 2 481.251089 960.487624 -0.0060266 -2.9003E-06 0.7131 0.00034318 0.70708 0.00034028 481.2515320273495 26.638 0.40792 24.716 24.576 24.984 -1.9222 16 11 2 0 0 0 0.19171 2 4412 4398;4412 38.176 5.3899 1 798010 530 5340 300 300 685;686 686 0.005799891668630153 AEDAMLDVV 9 Unmodified _AEDAMLDVV_ 0 0 0 REV__sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1 REV__sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7796630859375 2 481.7286 961.442648 NaN NaN NaN NaN NaN NaN NaN 113.47 1 109.02 108.52 109.52 -4.4539 0 0 0 0.21065 1 22355 22355 20.454 3.5113 1 + 531 24716 301 301 687 687 -0.039615776906771316 AEDASTLIV 9 Unmodified _AEDASTLIV_ 0 0 0 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2445068359375 2 459.742565 917.470577 -0.20812 -9.568E-05 0.049334 2.2681E-05 -0.15878 -7.2999E-05 459.7426704576518 103.7 0.47594 99.478 99.111 99.587 -4.2183 16 13 2 0 0 0 0.69192 1 20336 20336 26.884 9.9414 1 714830 532 1837 302 302 688 688 0.008540685610682885 AEDCEWEV 8 Unmodified _AEDCEWEV_ 0 0 0 REV__ENST00000509486.2_1_5:9237921-9318506:-|nuORF REV__ENST00000509486.2_1_5:9237921-9318506:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25531005859375 2 490.686933 979.359312 0.094771 4.6503E-05 1.8021 0.00088428 1.8969 0.00093078 490.6907584887808 130.36 0.84366 125.52 125.05 125.89 -4.8355 110 23 6 0 0 0 0.96284 1 25015 25015 8.5933 1.304 1 7538600 + 533 15318 303 303 689 689 -0.13119314138543814 AEDDLIKD 8 Unmodified _AEDDLIKD_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22637939453125 2 459.724372 917.434192 0.035505 1.6322E-05 0.48554 0.00022322 0.52105 0.00023954 459.72450180912955 59.487 1.5178 56.173 55.461 56.979 -3.3139 109 42 4 0 0 0 0.70613 1 11156 11156 13.508 0.97634 1 18176000 + 534 17219 304 304 690 690 -0.02782808335655318 AEDDLIKD 8 Unmodified _AEDDLIKD_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.22637939453125 2 459.724372 917.434192 0.12072 5.5499E-05 0.47594 0.0002188 0.59666 0.0002743 459.7244787980645 59.498 1.5092 56.275 55.52 57.029 -3.2237 111 42 4 0 0 0 0.64227 1 11198 11198 19.439 2.4967 1 16256000 + 535 17219 304 304 691 691 -0.02782808335655318 AEDDLNTVAA 10 Unmodified _AEDDLNTVAA_ 0 0 0 nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23 nc|ENSG00000204152|Q5SRD1-2|TIMM23B nc|ENSG00000204152|Q5SRD1-2|TIMM23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1019.4705200195312 1 1018.46875 1017.46147 0.30033 0.00030588 -0.71393 -0.00072711 -0.4136 -0.00042123 1018.468062597005 56.121 0.91204 52.932 52.492 53.404 -3.1895 59 25 3 0 0 0 0.26497 1 10338 10338 39.95 7.164 1 8329000 536 6578 305 305 692 692 -0.04656324795269029 AEDDLNTVAA 10 Unmodified _AEDDLNTVAA_ 0 0 0 nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23 nc|ENSG00000204152|Q5SRD1-2|TIMM23B nc|ENSG00000204152|Q5SRD1-2|TIMM23B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 1018.46875 1017.46147 -0.31769 -0.00032356 0.068541 6.9807E-05 -0.24915 -0.00025375 1018.4687761858968 55.747 0.85594 52.864 52.423 53.279 -2.8837 -0.091709 0.00050409 NaN 39.95 49 24 3 NaN NaN NaN NaN 0 NaN NaN 0 8047200 537 6578 305 305 -0.04656324795269029 AEDDSDGLAS 10 Unmodified _AEDDSDGLAS_ 0 0 0 REV__ENSG00000052795|ENST00000264433|FNIP2 REV__ENSG00000052795|ENST00000264433|FNIP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2762756347656 2 490.196176 978.377799 0.29732 0.00014575 -2.0123 -0.00098643 -1.715 -0.00084068 490.1952408258273 38.624 0.57112 38.624 38.32 38.891 0 21 15 2 0 0 0 0.71778 1 7110 7110 9.3831 0 1 531720 + 538 14092 306 306 693 693 -0.11225480962991696 AEDDSDGLAS 10 Unmodified _AEDDSDGLAS_ 0 0 0 REV__ENSG00000052795|ENST00000264433|FNIP2 REV__ENSG00000052795|ENST00000264433|FNIP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2760314941406 2 490.196176 978.377799 0.29732 0.00014575 -2.0123 -0.00098643 -1.715 -0.00084068 490.1952408258273 38.624 0.57112 38.624 38.32 38.891 0 21 15 2 0 0 0 0.90091 1 7169 7169 6.2058 0 1 531720 + 539 14092 306 306 694 694 -0.11225480962991696 AEDEEMAEKK 10 Unmodified _AEDEEMAEKK_ 0 0 0 REV__nc|ENSG00000178965|Q5RHP9-2|ERICH3 REV__nc|ENSG00000178965|Q5RHP9-2|ERICH3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2647094726562 2 590.263536 1178.51252 NaN NaN NaN NaN NaN NaN NaN 170.91 1 166.03 165.53 166.53 -4.873 0 0 0 2.8426 1 33844 33844 3.8763 1.3778 1 + 540 18629 307 307 695 695 -0.06959743812740271 AEDEFFVALY 10 Unmodified _AEDEFFVALY_ 0 0 0 REV__SHQ1|p.D202V|1|0.05|ENSG00000144736|chr3:72824546-72824546|T/A|missense_variant REV__SHQ1|p.D202V|1|0.05|ENSG00000144736|chr3:72824546-72824546|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2815551757812 2 602.282054 1202.54956 NaN NaN NaN NaN NaN NaN NaN 49.926 1 47.045 46.545 47.545 -2.8811 0 0 0 0.22588 1 9463 9463 10.824 0.75 1 + 541 24615 308 308 696 696 -0.04361704204666239 AEDEFPDLSA 10 Unmodified _AEDEFPDLSA_ 0 0 0 ENSG00000166165|ENST00000348956|CKB;ENST00000555770.1_1_14:103988551-103989144:-|nuORF ENSG00000166165|ENST00000348956|CKB ENSG00000166165|ENST00000348956|CKB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7701416015625 2 547.237844 1092.46113 0.64073 0.00035063 -0.34628 -0.0001895 0.29445 0.00016113 547.7393078639415 120.34 0.70107 115.7 115.27 115.97 -4.645 28 19 2 0 0 0 0.63858 1 23074 23074 17.113 3.2068 1 1023200 542 5694 309 309 697 697 -0.08139744515119673 AEDEPPAPP 9 Unmodified _AEDEPPAPP_ 0 0 0 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5384826660156 2 461.711265 921.407977 0.40007 0.00018472 0.426 0.00019669 0.82607 0.00038141 461.71111643364486 42.132 1.4406 42.132 41.164 42.605 0 47 40 2 0 0 0 0.46541 1 7810 7810 21.747 12.399 1 653980 543 5370 310 310 698 698 -0.05587077507141203 AEDEPPAPP 9 Unmodified _AEDEPPAPP_ 0 0 0 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.711265 921.407977 -0.10707 -4.9434E-05 0.046404 2.1425E-05 -0.060664 -2.8009E-05 461.7114474802077 44.947 1.2621 42.2 41.568 42.83 -2.7475 0.033932 -0.00017186 NaN 21.747 42 35 2 NaN NaN NaN NaN 0 NaN NaN 0 453070 544 5370 310 310 -0.05587077507141203 AEDEPQHVR 9 Unmodified _AEDEPQHVR_ 0 0 0 nc|ENSG00000085433|O94967-4|WDR47 nc|ENSG00000085433|O94967-4|WDR47 nc|ENSG00000085433|O94967-4|WDR47 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.25927734375 2 540.757069 1079.49959 0.44778 0.00024214 -0.076639 -4.1443E-05 0.37114 0.0002007 540.757023289119 40.158 0.45964 40.158 39.964 40.424 0 25 12 3 0 0 0 0.52396 1 7458 7458 18.146 3.3081 1 1823600 545 12242 311 311 699 699 -0.03698394089951762 AEDEYFQYKNY 11 Unmodified _AEDEYFQYKNY_ 0 0 0 tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1 tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1 tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2749938964844 3 490.545502 1468.61468 NaN NaN NaN NaN NaN NaN NaN 78.962 1 75.452 74.952 75.952 -3.5102 0 0 0 0.23452 1 15420 15420 4.7159 2.0847 1 546 26028 312 312 700 700 -0.10088754469461492 AEDFTIFKA 9 Unmodified _AEDFTIFKA_ 0 0 0 ENSG00000163001|ENST00000349456|CFAP36;nc|ENSG00000163001|Q96G28-2|CFAP36 ENSG00000163001|ENST00000349456|CFAP36 ENSG00000163001|ENST00000349456|CFAP36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2695922851562 2 521.266207 1040.51786 0.20645 0.00010761 0.047661 2.4844E-05 0.25411 0.00013246 521.2661586476044 129.59 1.0045 129.59 129.06 130.06 0 75 28 3 0 0 0 0.051332 6 25585 25522;25537;25563;25585;25637;25662 70.332 48.585 1 29479000 547 5392 313 313 701;702;703;704;705;706 704 -0.0007765216791995044 AEDFTIFKA 9 Unmodified _AEDFTIFKA_ 0 0 0 ENSG00000163001|ENST00000349456|CFAP36;nc|ENSG00000163001|Q96G28-2|CFAP36 ENSG00000163001|ENST00000349456|CFAP36 ENSG00000163001|ENST00000349456|CFAP36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2689819335938 2 521.266207 1040.51786 -0.23372 -0.00012183 0.44375 0.00023131 0.21003 0.00010948 521.2663867477326 134.12 0.91559 129.48 129.03 129.95 -4.6399 76 25 4 0 0 0 0.053942 4 26470 26394;26442;26470;26477 69.105 24.698 1 31649000 548 5392 313 313 707;708;709;710 709 -0.0007765216791995044 AEDFTIFKA 9 Unmodified _AEDFTIFKA_ 0 0 0 ENSG00000163001|ENST00000349456|CFAP36;nc|ENSG00000163001|Q96G28-2|CFAP36 ENSG00000163001|ENST00000349456|CFAP36 ENSG00000163001|ENST00000349456|CFAP36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2802124023438 2 521.266207 1040.51786 -0.66586 -0.00034709 0.90751 0.00047305 0.24165 0.00012596 521.2666079331893 134.26 0.96591 129.39 128.96 129.93 -4.8726 87 27 4 0 0 0 0.17734 1 25787 25787 40.239 13.356 1 30151000 549 5392 313 313 711 711 -0.0007765216791995044 AEDFTIFKA 9 Unmodified _AEDFTIFKA_ 0 0 0 ENSG00000163001|ENST00000349456|CFAP36;nc|ENSG00000163001|Q96G28-2|CFAP36 ENSG00000163001|ENST00000349456|CFAP36 ENSG00000163001|ENST00000349456|CFAP36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2803344726562 2 521.266207 1040.51786 0.25757 0.00013426 0.052636 2.7437E-05 0.3102 0.0001617 521.2661581595206 134.22 1.0229 129.4 128.95 129.97 -4.8175 87 28 4 0 0 0 0.11219 3 25828 25828;25902;25918 51.63 24.746 1 27356000 550 5392 313 313 712;713;714 712 -0.0007765216791995044 AEDFVCDY 8 Unmodified _AEDFVCDY_ 0 0 0 KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94;ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;KIAA0195|p.S895Pfs*13|5|0.32|ENSG00000177728|chr17:75494982-75494982|C/-|frameshift_variant;KIAA0195|p.E543K|1|0.4|ENSG00000177728|chr17:75492504-75492504|G/A|missense_variant;ENST00000583071.1_1_17:73488566-73488914:+|nuORF KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24273681640625 2 481.184026 960.353498 0.096278 4.6327E-05 -3.6054 -0.0017349 -3.5092 -0.0016885 481.18381025880205 60.801 0.73718 57.577 57.276 58.013 -3.2237 73 20 4 0 0 0 0.74718 1 11422 11422 24.674 0 1 13048000 551 6534 314 314 715 715 -0.12826412650213115 AEDGNPDR 8 Unmodified _AEDGNPDR_ 0 0 0 ENSG00000075234|ENST00000381031|TTC38 ENSG00000075234|ENST00000381031|TTC38 ENSG00000075234|ENST00000381031|TTC38 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.217041015625 2 437.188488 872.362424 NaN NaN NaN NaN NaN NaN NaN 44.792 1 42.002 41.502 42.502 -2.79 0 0 0 0.21486 1 8424 8424 5.2307 0 1 552 1512 315 315 716 716 -0.07886302969507142 AEDGPAIKD 9 Unmodified _AEDGPAIKD_ 0 0 0 MAGI3|p.R1443Hfs*9|1|0.06|ENSG00000081026|chr1:113683894-113683895|-/CATTTTCTCCTATTTTATCGTTACT|frameshift_variant;MAGI3|p.V1452Sfs*2|1|0.05|ENSG00000081026|chr1:113683920-113683921|-/T|frameshift_variant;MAGI3|p.V1452Ffs*4|1|0.05|ENSG00000081026|chr1:113683921-113683922|-/TTTTATC|frameshift_variant;ENSG00000081026|ENST00000307546|MAGI3;nc|ENSG00000081026|Q5TCQ9-1|MAGI3;nc|ENSG00000081026|Q5TCQ9-3|MAGI3;nc|ENSG00000081026|Q5TCQ9-2|MAGI3;MAGI3|p.K1170Rfs*5|1|0.26|ENSG00000081026|chr1:113683074-113683074|A/-|frameshift_variant;MAGI3|p.N1245Ifs*65|1|0.3|ENSG00000081026|chr1:113683297-113683297|A/-|frameshift_variant;MAGI3|p.I1358Nfs*6|1|0.3|ENSG00000081026|chr1:113683633-113683634|-/A|frameshift_variant MAGI3|p.R1443Hfs*9|1|0.06|ENSG00000081026|chr1:113683894-113683895|-/CATTTTCTCCTATTTTATCGTTACT|frameshift_variant MAGI3|p.R1443Hfs*9|1|0.06|ENSG00000081026|chr1:113683894-113683895|-/CATTTTCTCCTATTTTATCGTTACT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2248840332031 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 53.902 1 51.018 50.518 51.518 -2.8837 0 0 0 0.21844 1 10272 10272 18.146 3.5647 1 553 1624 316 316 717 717 -0.0261138861579866 AEDGSRVYVV 10 Unmodified _AEDGSRVYVV_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7779541015625 2 547.77747 1093.54039 0.25682 0.00014068 0.42335 0.0002319 0.68017 0.00037258 547.7777014979105 65.316 0.45833 61.858 61.716 62.174 -3.4581 18 12 2 0 0 0 0.15354 2 12254 12209;12254 24.991 10.586 1 696020 554 6089 317 317 718;719 719 -0.0026405277033063612 AEDISNIMRVL 11 Unmodified _AEDISNIMRVL_ 0 0 0 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7554931640625 2 630.834462 1259.65437 1.1695 0.00073778 1.5678 0.00098902 2.7373 0.0017268 631.3362060967163 166.82 0.21095 162.03 161.87 162.09 -4.7898 6 5 2 0 0 0 0.62556 1 33542 33542 0.172 0.17062 1 15429000 555 7743 318 318 720 720 0.03493094000259589 AEDISRVLY 9 Unmodified _AEDISRVLY_ 0 0 0 tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1 tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1 tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2725830078125 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 80.648 1 76.808 76.308 77.308 -3.8392 0 0 0 0.23277 1 15309 15309 13.906 0.86358 1 556 26196 319 319 721 721 0.020531352350417365 AEDKAYTLFHN 11 Unmodified _AEDKAYTLFHN_ 0 0 0 REV__tr|U7SU63|U7SU63_FUSNUPrecorrin-6YC5,15-methyltransferase(Decarboxylating),CbiTsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01034PE=4SV=1 REV__tr|U7SU63|U7SU63_FUSNUPrecorrin-6YC5,15-methyltransferase(Decarboxylating),CbiTsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01034PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2154235839844 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 81.944 1 78.387 77.887 78.887 -3.557 0 0 0 0.2326 1 16011 16011 6.2344 0 1 + 557 25145 320 320 722 722 -0.026887096787959308 AEDKEGKP 8 Unmodified _AEDKEGKP_ 0 0 0 ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1 ENSG00000072958|ENST00000291439|AP1M1 ENSG00000072958|ENST00000291439|AP1M1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2226257324219 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 37.881 1 35.412 34.912 35.912 -2.4688 0 0 0 0.19342 1 7005 7005 26.884 1.4843 1 558 1478 321 321 723 723 -0.01735371270228825 AEDKEIQR 8 Unmodified _AEDKEIQR_ 0 0 0 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.0126953125 3 330.173451 987.498523 -0.51083 -0.00016866 0.31978 0.00010558 -0.19105 -6.3078E-05 330.17352360854244 17.026 0.28644 17.026 16.851 17.137 0 16 7 3 0 0 0 1.0277 1 2689 2689 1.6526 0 1 1322100 559 7363 322 322 724 724 0.004273915411545204 AEDKEIQR 8 Unmodified _AEDKEIQR_ 0 0 0 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 330.173451 987.498523 -0.38138 -0.00012592 0.25532 8.4301E-05 -0.12606 -4.1621E-05 330.1735350813919 18.121 0.24837 16.81 16.686 16.935 -1.3109 -0.10795 -4.2162E-05 NaN 1.6526 15 6 3 NaN NaN NaN NaN 0 NaN NaN 0 816990 560 7363 322 322 0.004273915411545204 AEDKLQCL 8 Unmodified _AEDKLQCL_ 0 0 0 REV__ENST00000594688.1_1_19:42928150-42928231:+|nuORF REV__ENST00000594688.1_1_19:42928150-42928231:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2296142578125 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 117.55 1 113.14 112.64 113.64 -4.4088 0 0 0 0.21486 1 22623 22623 9.3474 0 1 + 561 23368 323 323 725 725 -0.014418541082250158 AEDKQPPA 8 Unmodified _AEDKQPPA_ 0 0 0 ENST00000503369.1_1_4:88036121-88046296:+|nuORF;AFF1|p.R820Tfs*98|1|0.12|ENSG00000172493|chr4:87125045-87125048|AGAA/-|frameshift_variant;nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1 ENST00000503369.1_1_4:88036121-88046296:+|nuORF ENST00000503369.1_1_4:88036121-88046296:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 428.1724548339844 2 428.213975 854.413397 NaN NaN NaN NaN NaN NaN NaN 23.294 1 21.505 21.005 22.005 -1.7886 0 0 0 0.21486 1 3739 3739 5.7604 0 1 562 88 324 324 726 726 -0.01963353924668354 AEDKSWRVRY 10 Unmodified _AEDKSWRVRY_ 0 0 0 ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;ENSG00000105568|ENST00000322088|PPP2R1A ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22882080078125 3 437.226438 1308.65748 NaN NaN NaN NaN NaN NaN NaN 30.658 1 28.765 28.265 29.265 -1.8928 0 0 0 2.8426 1 5265 5265 0.063865 0 1 563 2320;4100 325 325 727 727 0.015501051693036061 AEDLGQIQ 8 Unmodified _AEDLGQIQ_ 0 0 0 nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D;nc|ENSG00000118322|O94823-3|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;ATP10D|p.L617Cfs*41|2|0.28|ENSG00000145246|chr4:47557681-47557681|G/-|frameshift_variant;ATP10D|p.L863*|1|0.21|ENSG00000145246|chr4:47560990-47560990|T/-|frameshift_variant;ATP10D|p.L863Ffs*3|1|0.28|ENSG00000145246|chr4:47560989-47560990|-/T|frameshift_variant;ATP10D|p.L1148*|1|0.28|ENSG00000145246|chr4:47576846-47576846|T/-|frameshift_variant;ENSG00000118322|ENST00000327245|ATP10B nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2218322753906 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 37.88 1 35.542 35.042 36.042 -2.3375 0 0 0 0.20294 1 6717 6717 23.148 2.6948 1 564 4600;3029 326 326 728 728 -0.01735371270228825 AEDLINLDY 9 Unmodified _AEDLINLDY_ 0 0 0 tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1 tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1 tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2607421875 2 533.258579 1064.50261 NaN NaN NaN NaN NaN NaN NaN 104.72 1 100.38 99.876 100.88 -4.346 0 0 0 0.21844 1 20066 20066 18.146 3.5647 1 565 26374 327 327 729 729 -0.02706563755782554 AEDLIQTQ 8 Unmodified _AEDLIQTQ_ 0 0 0 ENST00000543157.7_1_19:19304755-19307890:+|nuORF;ENST00000545522.2_1_19:19304755-19308134:+|nuORF;RFXANK|p.H151Pfs*30|1|0.26|ENSG00000064490|chr19:19198114-19198115|-/C|frameshift_variant;nc|ENSG00000064490|O14593-2|RFXANK;ENST00000541873.6_1_19:19304755-19309594:+|nuORF;nc|ENSG00000064490|O14593-3|RFXANK;ENSG00000064490|ENST00000303088|RFXANK ENST00000543157.7_1_19:19304755-19307890:+|nuORF ENST00000543157.7_1_19:19304755-19307890:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2310485839844 2 459.232364 916.450176 -0.032179 -1.4777E-05 0.44797 0.00020572 0.41579 0.00019094 459.23254269518856 77.836 1.6501 74.069 72.946 74.596 -3.7664 83 46 3 0 0 0 0.58432 1 14822 14822 23.148 3.8914 1 15610000 566 1335 328 328 730 730 -0.011391020987502998 AEDLPMRNT 9 Unmodified _AEDLPMRNT_ 0 0 0 ENSG00000160959|ENST00000292524|LRRC14 ENSG00000160959|ENST00000292524|LRRC14 ENSG00000160959|ENST00000292524|LRRC14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6847534179688 2 523.750398 1045.48624 0.24279 0.00012716 -0.99333 -0.00052025 -0.75053 -0.00039309 523.7497251837426 25.776 0.45849 25.776 25.526 25.985 0 26 12 3 0 0 0 0.16619 1 4465 4465 41.84 7.4379 1 4541300 567 5277 329 329 731 731 -0.03467968193535853 AEDLPMRNT 9 Unmodified _AEDLPMRNT_ 0 0 0 ENSG00000160959|ENST00000292524|LRRC14 ENSG00000160959|ENST00000292524|LRRC14 ENSG00000160959|ENST00000292524|LRRC14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.750398 1045.48624 -0.32926 -0.00017245 -2.014 -0.0010548 -2.3433 -0.0012273 523.7493628228949 27.484 0.48718 25.729 25.443 25.93 -1.7552 -0.023629 -0.00052946 NaN 41.84 33 13 4 NaN NaN NaN NaN 0 NaN NaN 0 4720100 568 5277 329 329 -0.03467968193535853 AEDLPTTKS 9 Unmodified _AEDLPTTKS_ 0 0 0 ENST00000431210.2_1_11:74555176-74574187:-|nuORF;ENST00000531849.5_1_11:74554845-74617298:-|nuORF;nc|ENSG00000166435|Q6P2D8-5|XRRA1;nc|ENSG00000166435|Q6P2D8-2|XRRA1;nc|ENSG00000166435|Q6P2D8-4|XRRA1;XRRA1|p.T704Rfs*62|1|0.09|ENSG00000166435|chr11:74843867-74843868|TG/-|frameshift_variant;nc|ENSG00000166435|Q6P2D8-3|XRRA1;nc|ENSG00000166435|Q6P2D8|XRRA1;ENSG00000166435|ENST00000684022|XRRA1 ENST00000431210.2_1_11:74555176-74574187:-|nuORF ENST00000431210.2_1_11:74555176-74574187:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2449951171875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 26.336 1 24.554 24.054 25.054 -1.7821 0 0 0 0.20681 1 4645 4645 21.59 1.1365 1 569 5721 330 330 732 732 -0.005428329272831434 AEDLTREK 8 Unmodified _AEDLTREK_ 0 0 0 REV__ENST00000571526.1_1_17:4796496-4796983:+|nuORF REV__ENST00000571526.1_1_17:4796496-4796983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7731018066406 2 481.251089 960.487624 0.040863 1.9665E-05 1.5217 0.00073231 1.5625 0.00075198 481.2518469026552 24.939 0.33745 24.939 24.781 25.118 0 14 9 2 0 0 0 8448 1 4302 4302 1.7423 0.28721 1 559130 + 570 16632 331 331 733 733 0.005799891668630153 AEDLTREK 8 Unmodified _AEDLTREK_ 0 0 0 REV__ENST00000571526.1_1_17:4796496-4796983:+|nuORF REV__ENST00000571526.1_1_17:4796496-4796983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2367248535156 2 481.251089 960.487624 1.1091 0.00053375 -0.90467 -0.00043537 0.20443 9.8383E-05 481.2505970223823 26.544 0.37486 24.762 24.552 24.926 -1.7821 14 10 2 0 0 0 8448 1 4657 4657 1.7423 0.0504 1 929680 + 571 16632 331 331 734 734 0.005799891668630153 AEDLVTLSA 9 Unmodified _AEDLVTLSA_ 0 0 0 REV__ENSG00000184560|ENST00000333870|SPEM2 REV__ENSG00000184560|ENST00000333870|SPEM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2442626953125 2 459.742565 917.470577 0.43051 0.00019792 -0.16776 -7.7127E-05 0.26274 0.00012079 459.7424273940338 118.14 0.96581 113.73 113.24 114.21 -4.4088 79 26 4 0 0 0 0.054622 1 22790 22790 14.987 6.0736 1 24466000 + 572 18903 332 332 735 735 0.008540685610455512 AEDNFNNTY 9 Unmodified _AEDNFNNTY_ 0 0 0 ENST00000495720.5_1_1:153958496-153958682:-|nuORF;ENST00000462680.5_1_1:153955993-153958658:-|nuORF;ENSG00000143545|ENST00000368575|RAB13 ENST00000495720.5_1_1:153958496-153958682:-|nuORF ENST00000495720.5_1_1:153958496-153958682:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7913818359375 2 544.219985 1086.42542 NaN NaN NaN NaN NaN NaN NaN 37.721 1 37.721 37.221 38.221 0 0 0 0 0.23508 1 6979 6979 7.2892 0.56607 1 573 4501 333 333 736 736 -0.11433781972141333 AEDPGPAVA 9 Unmodified _AEDPGPAVA_ 0 0 0 nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 413.19244384765625 2 413.7007 825.386848 0.056858 2.3522E-05 -0.057938 -2.3969E-05 -0.00108 -4.4678E-07 413.7006294434479 31.85 0.97657 31.85 31.386 32.363 0 44 27 2 0 0 0 0.15943 1 5741 5741 18.614 6.8647 1 3687400 574 3253 334 334 737 737 -0.03283042816008219 AEDPGPAVA 9 Unmodified _AEDPGPAVA_ 0 0 0 nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 413.7082214355469 2 413.7007 825.386848 -0.26093 -0.00010795 0.11516 4.7643E-05 -0.14576 -6.0302E-05 413.70072442567385 34.028 0.79643 31.71 31.358 32.155 -2.3175 37 22 2 0 0 0 0.2213 1 6217 6217 8.9129 7.6981 1 1644600 575 3253 334 334 738 738 -0.03283042816008219 AEDPGPAVA 9 Unmodified _AEDPGPAVA_ 0 0 0 nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 413.7007 825.386848 0.18168 7.5162E-05 -0.30469 -0.00012605 -0.123 -5.0887E-05 413.7005650607089 34.008 0.79327 31.862 31.496 32.29 -2.1468 0.054199 -0.00017761 NaN 18.614 37 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1119500 576 3253 334 334 -0.03283042816008219 AEDPNISK 8 Unmodified _AEDPNISK_ 0 0 0 REV__ENST00000425843.1_1_X:120337248-120337797:-|nuORF REV__ENST00000425843.1_1_X:120337248-120337797:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21795654296875 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 51.514 1 48.462 47.962 48.962 -3.0517 0 0 0 0.21486 1 9493 9493 8.5933 0 1 + 577 15184 335 335 739 739 -0.017353712702401936 AEDPRTKY 8 Unmodified _AEDPRTKY_ 0 0 0 ENST00000542058.5_3_12:65141492-65141585:-|nuORF ENST00000542058.5_3_12:65141492-65141585:-|nuORF ENST00000542058.5_3_12:65141492-65141585:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26922607421875 2 490.245806 978.47706 0.064225 3.1486E-05 0.40927 0.00020064 0.47349 0.00023213 490.24600566222523 44.747 0.66989 41.981 41.664 42.334 -2.7661 45 18 3 0 0 0 0.69031 1 8045 8045 15.847 4.2069 1 11119000 578 11083 336 336 740 740 -0.013039934875678227 AEDPRTKY 8 Unmodified _AEDPRTKY_ 0 0 0 ENST00000542058.5_3_12:65141492-65141585:-|nuORF ENST00000542058.5_3_12:65141492-65141585:-|nuORF ENST00000542058.5_3_12:65141492-65141585:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2624816894531 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 63.327 1 59.911 59.411 60.411 -3.4158 0 0 0 0.20462 1 11828 11828 21.747 1.293 1 579 11083 336 336 741 741 -0.013039934875678227 AEDPSQLP 8 Unmodified _AEDPSQLP_ 0 0 0 ENST00000482943.1_1_1:201932715-201938679:+|nuORF;ENSG00000134375|ENST00000367287|TIMM17A ENST00000482943.1_1_1:201932715-201938679:+|nuORF ENST00000482943.1_1_1:201932715-201938679:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 429.70892333984375 2 428.705983 855.397412 0.024808 1.0635E-05 -0.044562 -1.9104E-05 -0.019754 -8.4686E-06 428.70589528057985 54.169 2.1294 51.034 50.417 52.546 -3.1352 116 60 3 0 0 0 8448 1 10000 10000 19.391 14.675 1 26888000 580 3850 337 337 742 742 -0.03607060161550635 AEDPSQLP 8 Unmodified _AEDPSQLP_ 0 0 0 ENST00000482943.1_1_1:201932715-201938679:+|nuORF;ENSG00000134375|ENST00000367287|TIMM17A ENST00000482943.1_1_1:201932715-201938679:+|nuORF ENST00000482943.1_1_1:201932715-201938679:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 428.705983 855.397412 0.25238 0.0001082 -0.17963 -7.701E-05 0.072743 3.1186E-05 428.70583461583647 51.158 1.7736 51.158 50.371 52.145 0 0.091146 -0.00026569 NaN 19.391 99 50 3 NaN NaN NaN NaN 0 NaN NaN 0 16187000 581 3850 337 337 -0.03607060161550635 AEDPSQLP 8 Unmodified _AEDPSQLP_ 0 0 0 ENST00000482943.1_1_1:201932715-201938679:+|nuORF;ENSG00000134375|ENST00000367287|TIMM17A ENST00000482943.1_1_1:201932715-201938679:+|nuORF ENST00000482943.1_1_1:201932715-201938679:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 428.705983 855.397412 -0.37614 -0.00016125 0.40728 0.00017461 0.031145 1.3352E-05 428.70608315128425 53.983 1.9662 51.099 50.35 52.316 -2.8837 0.032951 0.00023754 NaN 19.391 117 56 3 NaN NaN NaN NaN 0 NaN NaN 0 32700000 582 3850 337 337 -0.03607060161550635 AEDPSQLP 8 Unmodified _AEDPSQLP_ 0 0 0 ENST00000482943.1_1_1:201932715-201938679:+|nuORF;ENSG00000134375|ENST00000367287|TIMM17A ENST00000482943.1_1_1:201932715-201938679:+|nuORF ENST00000482943.1_1_1:201932715-201938679:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 428.705983 855.397412 -0.28045 -0.00012023 0.2997 0.00012848 0.019249 8.2522E-06 428.7059956094541 54.112 2.0172 50.975 50.435 52.452 -3.1377 -0.091745 0.00014529 NaN 19.391 114 57 3 NaN NaN NaN NaN 0 NaN NaN 0 20851000 583 3850 337 337 -0.03607060161550635 AEDPYKSF 8 Unmodified _AEDPYKSF_ 0 0 0 nc|ENSG00000175198|P05165-3|PCCA;nc|ENSG00000175198|P05165-2|PCCA;ENSG00000175198|ENST00000376285|PCCA nc|ENSG00000175198|P05165-3|PCCA nc|ENSG00000175198|P05165-3|PCCA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.720947265625 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 113.25 1 108.8 108.3 109.3 -4.4539 0 0 0 0.21486 1 22314 22314 11.64 0 1 584 6393 338 338 743 743 -0.05078487127468634 AEDQKIHRP 9 Unmodified _AEDQKIHRP_ 0 0 0 ENSG00000107874|ENST00000369937|CUEDC2;ENST00000465409.1_1_10:104183185-104183703:-|nuORF ENSG00000107874|ENST00000369937|CUEDC2 ENSG00000107874|ENST00000369937|CUEDC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 365.2289733886719 3 365.196478 1092.56761 -0.5781 -0.00021112 0.7544 0.0002755 0.1763 6.4384E-05 365.19675721074674 15.573 1.3085 14.351 13.127 14.435 -1.2219 45 37 2 0 0 0 0.47592 1 2172 2172 17.113 14.482 1 925550 585 2446 339 339 744 744 0.025024755606864346 AEDQKIHRP 9 Unmodified _AEDQKIHRP_ 0 0 0 ENSG00000107874|ENST00000369937|CUEDC2;ENST00000465409.1_1_10:104183185-104183703:-|nuORF ENSG00000107874|ENST00000369937|CUEDC2 ENSG00000107874|ENST00000369937|CUEDC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 365.196478 1092.56761 -0.82304 -0.00030057 1.1901 0.00043461 0.36704 0.00013404 365.19692574906315 15.562 0.55675 14.346 13.889 14.445 -1.2159 -0.0025213 0.00026645 NaN 17.113 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 639650 586 2446 339 339 0.025024755606864346 AEDQTDHN 8 Unmodified _AEDQTDHN_ 0 0 0 REV__ENSG00000177283|ENST00000374694|FZD8 REV__ENSG00000177283|ENST00000374694|FZD8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.241943359375 2 465.183403 928.352253 NaN NaN NaN NaN NaN NaN NaN 108.33 1 103.91 103.41 104.41 -4.4121 0 0 0 0.23487 1 20786 20786 0.063987 0 1 + 587 18550 340 340 745 745 -0.11478910694756905 AEDQVEPPA 9 Unmodified _AEDQVEPPA_ 0 0 0 ENST00000433288.2_1_1:151922871-151923141:-|nuORF ENST00000433288.2_1_1:151922871-151923141:-|nuORF ENST00000433288.2_1_1:151922871-151923141:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7419128417969 2 478.221997 954.429441 -0.052501 -2.5107E-05 0.027296 1.3053E-05 -0.025205 -1.2054E-05 478.2219124449896 30.782 0.86748 30.782 30.417 31.284 0 56 24 3 0 0 0 0.54354 1 5630 5630 16.942 0 1 3713300 588 9808 341 341 746 746 -0.04959692478416855 AEDRGTLSA 9 Unmodified _AEDRGTLSA_ 0 0 0 ENSG00000087269|ENST00000416614|NOP14;nc|ENSG00000087269|P78316-2|NOP14 ENSG00000087269|ENST00000416614|NOP14 ENSG00000087269|ENST00000416614|NOP14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.22711181640625 2 460.227613 918.440674 0.19906 9.1614E-05 -0.098791 -4.5467E-05 0.10027 4.6147E-05 460.22760648378363 20.38 1.4726 20.38 19.825 21.298 0 101 41 5 0 0 0 0.04653 4 3331 3331;3377;3422;3466 84.522 39.95 1 75994000 589 1713 342 342 747;748;749;750 747 -0.021808703842793875 AEDRGTLSA 9 Unmodified _AEDRGTLSA_ 0 0 0 ENSG00000087269|ENST00000416614|NOP14;nc|ENSG00000087269|P78316-2|NOP14 ENSG00000087269|ENST00000416614|NOP14 ENSG00000087269|ENST00000416614|NOP14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2275085449219 2 460.227613 918.440674 0.42223 0.00019432 -0.43182 -0.00019874 -0.0095915 -4.4143E-06 460.2274133789789 21.675 0.68016 20.2 19.876 20.557 -1.4742 55 18 4 0 0 0 0.033723 2 3675 3675;3728 93.938 36.216 1 40193000 590 1713 342 342 751;752 751 -0.021808703842793875 AEDRGTLSA 9 Unmodified _AEDRGTLSA_ 0 0 0 ENSG00000087269|ENST00000416614|NOP14;nc|ENSG00000087269|P78316-2|NOP14 ENSG00000087269|ENST00000416614|NOP14 ENSG00000087269|ENST00000416614|NOP14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2275085449219 2 460.227613 918.440674 -0.21967 -0.0001011 0.25222 0.00011608 0.032555 1.4983E-05 460.2277138931409 21.578 0.6615 20.193 19.936 20.597 -1.3847 53 18 4 0 0 0 0.050984 2 3393 3393;3441 84.522 84.522 1 19103000 591 1713 342 342 753;754 753 -0.021808703842793875 AEDRGTLSA 9 Unmodified _AEDRGTLSA_ 0 0 0 ENSG00000087269|ENST00000416614|NOP14;nc|ENSG00000087269|P78316-2|NOP14 ENSG00000087269|ENST00000416614|NOP14 ENSG00000087269|ENST00000416614|NOP14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2276306152344 2 460.227613 918.440674 -0.65948 -0.00030351 0.61351 0.00028236 -0.045972 -2.1157E-05 460.22786359076514 21.857 0.60907 20.136 19.85 20.46 -1.7211 47 17 4 0 0 0 0.04653 2 3410 3410;3459 78.06 26.431 1 9517700 592 1713 342 342 755;756 755 -0.021808703842793875 AEDRRINVA 9 Unmodified _AEDRRINVA_ 0 0 0 ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2667846679688 2 522.283254 1042.55196 -0.69868 -0.00036491 0.88076 0.00046001 0.18208 9.5098E-05 522.283655791204 24.325 0.34457 22.791 22.575 22.919 -1.5342 23 9 3 0 0 0 0.15889 1 3931 3931 22.736 10.496 1 4472400 593 3757 343 343 757 757 0.03238189043690909 AEDRRINVA 9 Unmodified _AEDRRINVA_ 0 0 0 ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2825317382812 2 522.283254 1042.55196 -0.20061 -0.00010478 0.25924 0.00013539 0.058622 3.0617E-05 522.2833511103198 24.545 0.34126 22.692 22.539 22.881 -1.8534 24 9 3 0 0 0 0.44932 1 3982 3982 22.736 1.1993 1 2982300 594 3757 343 343 758 758 0.03238189043690909 AEDSGEVGR 9 Unmodified _AEDSGEVGR_ 0 0 0 REV__NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant REV__NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2406005859375 2 460.209421 918.404288 0.57589 0.00026503 1.2359 0.00056878 1.8118 0.00083381 460.20988894840303 46.955 1.6114 46.955 46.139 47.751 0 118 45 3 0 0 0 0.31728 1 8946 8946 4.7159 3.5011 1 7190400 + 595 17436 344 344 759 759 -0.05817747280968888 AEDSLFYNY 9 Unmodified _AEDSLFYNY_ 0 0 0 REV__tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1 REV__tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2091064453125 3 374.497712 1120.47131 -0.20739 -7.7667E-05 -2.6399 -0.00098864 -2.8473 -0.0010663 374.4974814566307 19.055 0.86642 19.055 18.892 19.758 0 92 24 6 0 0 0 0.77797 1 3195 3195 2.7352 0.82882 1 54649000 + 596 25468 345 345 760 760 -0.08411136789891316 AEDSLFYNY 9 Unmodified _AEDSLFYNY_ 0 0 0 REV__tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1 REV__tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2203674316406 3 374.497712 1120.47131 -0.34053 -0.00012753 -1.5909 -0.00059578 -1.9314 -0.0007233 374.83288451750377 70.284 0.49104 66.817 66.569 67.06 -3.467 33 13 5 0 0 0 0.72108 1 13266 13266 5.2969 0.39987 1 1685000 + 597 25468 345 345 761 761 -0.08411136789891316 AEDSNWVNKVF 11 Unmodified _AEDSNWVNKVF_ 0 0 0 nc|ENSG00000180316|Q8N8W4-2|PNPLA1;nc|ENSG00000180316|Q8N8W4-3|PNPLA1;nc|ENSG00000180316|Q8N8W4|PNPLA1;ENSG00000180316|ENST00000636260|PNPLA1 nc|ENSG00000180316|Q8N8W4-2|PNPLA1 nc|ENSG00000180316|Q8N8W4-2|PNPLA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2169189453125 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 40.329 1 40.329 39.829 40.829 0 0 0 0 0.23698 1 7500 7500 1.3296 0 1 598 6666 346 346 762 762 -0.026887096788186682 AEDSREPI 8 Unmodified _AEDSREPI_ 0 0 0 REV__CD86|p.R312H|1|0.32|ENSG00000114013|chr3:122119479-122119479|G/A|missense_variant REV__CD86|p.R312H|1|0.32|ENSG00000114013|chr3:122119479-122119479|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2354431152344 2 458.722164 915.429775 0.066201 3.0368E-05 -0.013435 -6.1629E-06 0.052766 2.4205E-05 458.7219920295952 124.43 0.80372 119.85 119.41 120.21 -4.5757 35 22 2 0 0 0 0.97966 1 24448 24448 7.2892 0 1 1928800 + 599 13335 347 347 763 763 -0.031322727585575194 AEDTIQGVP 9 Unmodified _AEDTIQGVP_ 0 0 0 nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;ENSG00000253846|ENST00000398610|PCDHGA10 nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10 nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2562255859375 2 465.232364 928.450176 0.18221 8.4768E-05 -0.065056 -3.0266E-05 0.11715 5.4502E-05 465.23239644288446 25.178 0.44428 25.178 24.947 25.391 0 18 12 2 0 0 0 0.6329 1 4315 4315 10.824 0 1 536380 600 7919 348 348 764 764 -0.01691102098743613 AEDTIQGVP 9 Unmodified _AEDTIQGVP_ 0 0 0 nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;ENSG00000253846|ENST00000398610|PCDHGA10 nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10 nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2581787109375 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 26.709 1 24.787 24.287 25.287 -1.9222 0 0 0 0.23508 1 4435 4435 10.074 1.4806 1 601 7919 348 348 765 765 -0.01691102098743613 AEDTITALL 9 Unmodified _AEDTITALL_ 0 0 0 ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant;ITPR2|p.D636Afs*14|1|0.07|ENSG00000123104|chr12:26658110-26658111|-/AATGG|frameshift_variant;ITPR3|p.K608Sfs*66|1|0.34|ENSG00000096433|chr6:33667898-33667898|A/-|frameshift_variant;ITPR2|p.N858Kfs*2|1|0.38|ENSG00000123104|chr12:26655723-26655724|-/T|frameshift_variant;ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;ITPR2|p.L1313Ffs*10|1|0.43|ENSG00000123104|chr12:26599208-26599209|-/A|frameshift_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000123104|ENST00000381340|ITPR2 ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.17510986328125 3 316.174569 945.501877 NaN NaN NaN NaN NaN NaN NaN 135.76 1 131.12 130.62 131.62 -4.6399 0 0 0 0.23508 1 26782 26782 2.7352 1.2533 1 602 1876;3250 349 349 766 766 0.026946415951329072 AEDVIIVTS 9 Unmodified _AEDVIIVTS_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1755065917969 3 316.174569 945.501877 NaN NaN NaN NaN NaN NaN NaN 55.886 1 52.697 52.197 53.197 -3.1895 0 0 0 0.23508 1 10343 10343 4.897 0 1 603 6743 350 350 767 767 0.026946415951556446 AEDVKALHP 9 Unmodified _AEDVKALHP_ 0 0 0 REV__DNAH5|p.I1855Sfs*16|1|0.33|ENSG00000039139|chr5:13841052-13841052|T/-|frameshift_variant REV__DNAH5|p.I1855Sfs*16|1|0.33|ENSG00000039139|chr5:13841052-13841052|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2652587890625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 60.372 1 60.372 59.872 60.872 0 0 0 0 0.19711 1 11573 11573 0.12781 0.0049496 1 + 604 13713 351 351 768 768 0.023328834091330464 AEDVQRVV 8 Unmodified _AEDVQRVV_ 0 0 0 ENST00000539436.5_1_11:63991868-63992452:-|nuORF;nc|ENSG00000149743|Q86TN4-2|TRPT1;nc|ENSG00000149743|Q86TN4-3|TRPT1;ENSG00000149743|ENST00000317459|TRPT1;nc|ENSG00000149743|Q86TN4-4|TRPT1 ENST00000539436.5_1_11:63991868-63992452:-|nuORF ENST00000539436.5_1_11:63991868-63992452:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23065185546875 2 458.248349 914.482145 0.35112 0.0001609 -0.17591 -8.0609E-05 0.17521 8.029E-05 458.2480115394669 34.571 0.4593 32.349 32.115 32.574 -2.2224 27 12 3 0 0 0 8448 1 6087 6087 14.838 2.5976 1 1146500 605 4809 352 352 769 769 0.021483103750597365 AEDWQVKA 8 Unmodified _AEDWQVKA_ 0 0 0 REV__HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant REV__HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1985778808594 3 316.159142 945.455596 NaN NaN NaN NaN NaN NaN NaN 42.918 1 40.267 39.767 40.767 -2.651 0 0 0 0.21486 1 7737 7737 1.6526 0 1 + 606 14895 353 353 770 770 -0.019313785162808017 AEDYFMAKA 9 Unmodified _AEDYFMAKA_ 0 0 0 UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant;ENSG00000148154|ENST00000374279|UGCG UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6796264648438 2 523.236593 1044.45863 0.0063143 3.3039E-06 0.77555 0.0004058 0.78187 0.0004091 523.2375001575524 84.041 0.3531 80.33 80.026 80.379 -3.7117 10 9 2 0 0 0 0.7906 1 15995 15995 13.042 1.4022 1 815830 607 4729 354 354 771 771 -0.061818714537821506 AEDYGEHH 8 Unmodified _AEDYGEHH_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;LLGL2|p.V866I|1|0.79|ENSG00000073350|chr17:75573149-75573149|G/A|missense_variant nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7531433105469 2 479.188488 956.362424 NaN NaN NaN NaN NaN NaN NaN 63.772 1 60.775 60.275 61.275 -2.9975 0 0 0 0.22934 1 12328 12328 0.12286 0 1 608 1484 355 355 772 772 -0.11750302969517179 AEDYGEHHLA 10 Unmodified _AEDYGEHHLA_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;LLGL2|p.V866I|1|0.79|ENSG00000073350|chr17:75573149-75573149|G/A|missense_variant nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2198486328125 3 381.168477 1140.4836 -0.078255 -2.9828E-05 0.09641 3.6748E-05 0.018155 6.92E-06 381.1684877839744 25.347 0.44736 25.347 25.013 25.46 0 42 12 4 0 0 0 0.52698 1 4360 4360 35.612 19.046 1 17810000 609 1484 356 356 773 773 -0.08102100326846084 AEDYGEHHLA 10 Unmodified _AEDYGEHHLA_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;LLGL2|p.V866I|1|0.79|ENSG00000073350|chr17:75573149-75573149|G/A|missense_variant nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2194519042969 3 381.168477 1140.4836 0.18081 6.892E-05 -0.14518 -5.5337E-05 0.035636 1.3583E-05 381.16837400641975 26.986 0.42071 25.351 25.143 25.563 -1.6347 32 11 4 0 0 0 0.38836 1 4487 4487 42.312 30.138 1 36559000 610 1484 356 356 774 774 -0.08102100326846084 AEDYGEHHLA 10 Unmodified _AEDYGEHHLA_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;LLGL2|p.V866I|1|0.79|ENSG00000073350|chr17:75573149-75573149|G/A|missense_variant nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2193298339844 3 381.168477 1140.4836 -0.5323 -0.00020289 0.54578 0.00020804 0.013487 5.1409E-06 381.1686306696013 27.194 0.45265 25.272 25.088 25.541 -1.9222 34 12 4 0 0 0 0.092841 2 4561 4561;4563 29.437 21.75 1 43819000 611 1484 356 356 775;776 775 -0.08102100326846084 AEDYGEHHLA 10 Unmodified _AEDYGEHHLA_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;LLGL2|p.V866I|1|0.79|ENSG00000073350|chr17:75573149-75573149|G/A|missense_variant nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 381.168477 1140.4836 0.75252 0.00028684 -0.74961 -0.00028573 0.0029188 1.1126E-06 381.1681579181674 27.126 0.46687 25.344 25.165 25.631 -1.7821 0.01515 -0.00072128 NaN 21.75 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 36120000 612 1484 356 356 -0.08102100326846084 AEEAARLSVAA 11 Unmodified _AEEAARLSVAA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7955932617188 2 544.290745 1086.56694 0.24768 0.00013481 0.048505 2.6401E-05 0.29619 0.00016121 544.2907049931396 54.909 0.84719 54.909 54.419 55.266 0 58 23 3 0 0 0 0.24291 1 10519 10519 55.249 18.742 1 4742900 613 6567 357 357 777 777 0.027116361210119067 AEEAARLSVAA 11 Unmodified _AEEAARLSVAA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7857055664062 2 544.290745 1086.56694 0.10622 5.7813E-05 0.13974 7.6061E-05 0.24596 0.00013387 544.2907984070168 57.649 0.88171 54.754 54.166 55.048 -2.8944 53 24 3 0 0 0 0.087205 1 11045 11045 78.61 36.655 1 3623100 614 6567 357 357 778 778 0.027116361210119067 AEEAARLSVAA 11 Unmodified _AEEAARLSVAA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7920532226562 2 544.290745 1086.56694 0.095577 5.2022E-05 0.33894 0.00018448 0.43452 0.0002365 544.2908993448708 58.027 0.9532 54.775 54.147 55.1 -3.2517 61 26 3 0 0 0 0.064455 1 10780 10780 82.445 36.705 1 4945800 615 6567 357 357 779 779 0.027116361210119067 AEEAARLSVAA 11 Unmodified _AEEAARLSVAA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7782592773438 2 544.290745 1086.56694 0.15843 8.6234E-05 0.12453 6.7783E-05 0.28297 0.00015402 544.2908360347395 58.068 0.8934 54.862 54.406 55.299 -3.2052 60 25 3 0 0 0 0.056524 1 10828 10828 83.278 46.772 1 3119300 616 6567 357 357 780 780 0.027116361210119067 AEEAASVLAT 10 Unmodified _AEEAASVLAT_ 0 0 0 nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2 nc|ENSG00000163539|O75122|CLASP2 nc|ENSG00000163539|O75122|CLASP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2452087402344 2 481.245472 960.476391 0.0083109 3.9996E-06 -1.106 -0.00053225 -1.0977 -0.00052825 481.24525748620704 67.196 0.73526 64.087 63.652 64.387 -3.1086 26 20 3 0 0 0 0.32535 1 13054 13054 8.7518 7.537 1 977240 617 5439 358 358 781 781 -0.005428329272717747 AEEACILRG 9 Unmodified _AEEACILRG_ 0 0 0 ENSG00000176435|ENST00000342213|CLEC14A ENSG00000176435|ENST00000342213|CLEC14A ENSG00000176435|ENST00000342213|CLEC14A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25421142578125 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 81.453 1 77.896 77.396 78.396 -3.557 0 0 0 0.22251 1 15906 15906 16.942 1.0951 1 618 6466 359 359 782 782 -0.011950493596373235 AEEAEEEEDE 10 Unmodified _AEEAEEEEDE_ 0 0 0 REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2728271484375 2 590.21222 1178.40989 NaN NaN NaN NaN NaN NaN NaN 117.79 1 113.18 112.68 113.68 -4.6106 0 0 0 0.22588 1 22606 22606 5.7319 2.1354 1 + 619 17441 360 360 783 783 -0.17218158070500067 AEEAKEYGF 9 Unmodified _AEEAKEYGF_ 0 0 0 tr|U7T644|U7T644_FUSNUATP-dependentClpproteaseproteolyticsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00098PE=3SV=1 tr|U7T644|U7T644_FUSNUATP-dependentClpproteaseproteolyticsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00098PE=3SV=1 tr|U7T644|U7T644_FUSNUATP-dependentClpproteaseproteolyticsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00098PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.258544921875 2 522.237647 1042.46074 NaN NaN NaN NaN NaN NaN NaN 148.34 1 148.34 147.84 148.84 0 0 0 0 0.23508 1 29684 29684 11.64 1.5664 1 620 26487 361 361 784 784 -0.05879119444330172 AEEALQAAA 9 Unmodified _AEEALQAAA_ 0 0 0 ENSG00000174276|ENST00000310597|ZNHIT2 ENSG00000174276|ENST00000310597|ZNHIT2 ENSG00000174276|ENST00000310597|ZNHIT2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2189636230469 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 42.28 1 39.56 39.06 40.06 -2.7191 0 0 0 0.23508 1 7904 7904 12.241 2.8575 1 621 6338 362 362 785 785 -0.017353712702401936 AEEALQAAA 9 Unmodified _AEEALQAAA_ 0 0 0 ENSG00000174276|ENST00000310597|ZNHIT2 ENSG00000174276|ENST00000310597|ZNHIT2 ENSG00000174276|ENST00000310597|ZNHIT2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2161560058594 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 68.668 1 65.278 64.778 65.778 -3.3903 0 0 0 0.23508 1 12970 12970 12.532 3.1841 1 622 6338 362 362 786 786 -0.017353712702401936 AEEAPGARP 9 Unmodified _AEEAPGARP_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.1220703125 2 449.224874 896.435195 -0.44161 -0.00019838 0.32196 0.00014463 -0.11965 -5.3751E-05 449.22497518704165 18.197 0.71853 16.925 16.556 17.275 -1.2722 51 20 4 0 0 0 0.65155 1 2681 2681 15.847 2.3393 1 4891700 623 7957 363 363 787 787 -0.017165491760920304 AEEAPPRQ 8 Unmodified _AEEAPPRQ_ 0 0 0 ENST00000468045.5_1_2:27357168-27357309:-|nuORF ENST00000468045.5_1_2:27357168-27357309:-|nuORF ENST00000468045.5_1_2:27357168-27357309:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.1147766113281 2 449.224874 896.435195 -0.20006 -8.9874E-05 0.068132 3.0606E-05 -0.13193 -5.9267E-05 449.22487823837065 18.23 0.91088 16.919 16.475 17.386 -1.3109 64 25 4 0 0 0 0.70613 1 2918 2918 13.508 1.8676 1 8507600 624 10160 364 364 788 788 -0.017165491760920304 AEEAPQPEPGR 11 Unmodified _AEEAPQPEPGR_ 0 0 0 REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2509155273438 2 590.783284 1179.55202 0.69902 0.00041297 0.69566 0.00041098 1.3947 0.00082395 590.783847750519 28.562 1.1509 26.807 26.318 27.469 -1.7552 77 32 3 0 0 0 0.74296 1 4869 4869 32.037 4.4087 1 3182100 + 625 22457 365 365 789 789 -0.030578557470107626 AEEAPQPEPGR 11 Unmodified _AEEAPQPEPGR_ 0 0 0 REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 590.783284 1179.55202 0.41071 0.00024264 0.31459 0.00018585 0.72529 0.00042849 590.7833085096659 26.57 0.75155 26.57 26.156 26.907 0 -0.14661 -0.00010027 NaN 32.037 48 21 3 NaN NaN NaN NaN 0 NaN NaN 0 1990200 + 626 22457 365 365 -0.030578557470107626 AEEAPQPEPGR 11 Unmodified _AEEAPQPEPGR_ 0 0 0 REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 590.783284 1179.55202 1.2207 0.00072115 -0.21336 -0.00012605 1.0073 0.0005951 590.7832675480715 28.667 1.1125 26.711 26.226 27.338 -1.9561 -0.0055376 -0.00072408 NaN 32.037 75 31 3 NaN NaN NaN NaN 0 NaN NaN 0 2580300 + 627 22457 365 365 -0.030578557470107626 AEEAPQPEPGR 11 Unmodified _AEEAPQPEPGR_ 0 0 0 REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 590.783284 1179.55202 0.38147 0.00022536 1.4636 0.00086466 1.8451 0.00109 590.7840345778446 28.776 1.2548 26.779 26.064 27.319 -1.9962 0.062492 0.0012573 NaN 32.037 78 35 3 NaN NaN NaN NaN 0 NaN NaN 0 1812300 + 628 22457 365 365 -0.030578557470107626 AEEAQYGPI 9 Unmodified _AEEAQYGPI_ 0 0 0 REV__ADAT2|p.R159Q|1|0.14|ENSG00000189007|chr6:143428668-143428668|C/T|missense_variant REV__ADAT2|p.R159Q|1|0.14|ENSG00000189007|chr6:143428668-143428668|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2763977050781 2 489.232364 976.450176 0.0083877 4.1035E-06 0.6407 0.00031345 0.64909 0.00031756 489.2325080109411 108.53 1.6943 104.08 102.98 104.68 -4.4518 103 48 3 0 0 0 0.55979 1 20794 20794 15.847 0 1 9801100 + 629 12952 366 366 790 790 -0.03899102098750973 AEEAQYGPI 9 Unmodified _AEEAQYGPI_ 0 0 0 REV__ADAT2|p.R159Q|1|0.14|ENSG00000189007|chr6:143428668-143428668|C/T|missense_variant REV__ADAT2|p.R159Q|1|0.14|ENSG00000189007|chr6:143428668-143428668|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.232364 976.450176 -0.38587 -0.00018878 0.91938 0.00044979 0.53351 0.00026101 489.23268123296884 108.27 1.2888 103.95 103.34 104.63 -4.32 -0.063705 0.00031849 NaN 15.847 90 36 3 NaN NaN NaN NaN 0 NaN NaN 0 13063000 + 630 12952 366 366 -0.03899102098750973 AEEAQYGPI 9 Unmodified _AEEAQYGPI_ 0 0 0 REV__ADAT2|p.R159Q|1|0.14|ENSG00000189007|chr6:143428668-143428668|C/T|missense_variant REV__ADAT2|p.R159Q|1|0.14|ENSG00000189007|chr6:143428668-143428668|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.232364 976.450176 0.0083877 4.1035E-06 0.6407 0.00031345 0.64909 0.00031756 489.2325080109411 108.53 1.6943 104.08 102.98 104.68 -4.4518 0.062762 4.5822E-05 NaN 15.847 103 48 3 NaN NaN NaN NaN 0 NaN NaN 0 9801100 + 631 12952 366 366 -0.03899102098750973 AEEAQYGPI 9 Unmodified _AEEAQYGPI_ 0 0 0 REV__ADAT2|p.R159Q|1|0.14|ENSG00000189007|chr6:143428668-143428668|C/T|missense_variant REV__ADAT2|p.R159Q|1|0.14|ENSG00000189007|chr6:143428668-143428668|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.232364 976.450176 0.43408 0.00021236 0.24124 0.00011802 0.67531 0.00033038 489.232281759144 108.15 1.6333 104.02 103.04 104.68 -4.135 0.00094331 -0.00034504 NaN 15.847 101 46 3 NaN NaN NaN NaN 0 NaN NaN 0 8908100 + 632 12952 366 366 -0.03899102098750973 AEEARRRKQW 10 Unmodified _AEEARRRKQW_ 0 0 0 ENSG00000076826|ENST00000160298|CAMSAP3;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;ENST00000595692.1_1_19:7679981-7682940:+|nuORF ENSG00000076826|ENST00000160298|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 443.8629455566406 3 443.909331 1328.70617 NaN NaN NaN NaN NaN NaN NaN 9.8215 1 9.8215 9.3215 10.321 0 0 0 0 0.22588 1 1177 1177 0.13989 0.04505 1 633 1545 367 367 791 791 0.05496018529038338 AEEAWCRG 8 Unmodified _AEEAWCRG_ 0 0 0 ENST00000570164.5_1_16:31501628-31501862:-|nuORF ENST00000570164.5_1_16:31501628-31501862:-|nuORF ENST00000570164.5_1_16:31501628-31501862:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5254821777344 2 461.197802 920.381051 0.55825 0.00025746 0.63291 0.0002919 1.1912 0.00054936 461.1980593841628 46.711 1.507 46.711 46.244 47.751 0 76 42 2 0 0 0 0.49114 1 8938 8938 28.487 28.487 1 7168500 634 11413 368 368 792 792 -0.08232464599302602 AEEAWCRG 8 Unmodified _AEEAWCRG_ 0 0 0 ENST00000570164.5_1_16:31501628-31501862:-|nuORF ENST00000570164.5_1_16:31501628-31501862:-|nuORF ENST00000570164.5_1_16:31501628-31501862:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.540283203125 2 461.197802 920.381051 -0.099443 -4.5863E-05 1.2078 0.00055702 1.1083 0.00051116 461.19845060233956 45.898 0.93909 43.057 42.654 43.593 -2.8409 35 26 2 0 0 0 0.36038 1 8635 8635 34.102 7.8343 1 1085600 635 11413 368 368 793 793 -0.08232464599302602 AEEAWCRG 8 Unmodified _AEEAWCRG_ 0 0 0 ENST00000570164.5_1_16:31501628-31501862:-|nuORF ENST00000570164.5_1_16:31501628-31501862:-|nuORF ENST00000570164.5_1_16:31501628-31501862:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5449523925781 2 461.197802 920.381051 -0.011081 -5.1104E-06 1.089 0.00050223 1.0779 0.00049712 461.19826898195674 50.183 1.6158 47.184 46.479 48.095 -2.999 85 46 2 0 0 0 0.60622 1 9318 9318 21.747 4.8044 1 11788000 636 11413 368 368 794 794 -0.08232464599302602 AEEAWCRG 8 Unmodified _AEEAWCRG_ 0 0 0 ENST00000570164.5_1_16:31501628-31501862:-|nuORF ENST00000570164.5_1_16:31501628-31501862:-|nuORF ENST00000570164.5_1_16:31501628-31501862:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.197802 920.381051 0.55825 0.00025746 0.63291 0.0002919 1.1912 0.00054936 461.1980593841628 46.711 1.507 46.711 46.244 47.751 0 -0.33559 -0.00039785 NaN 28.487 76 42 2 NaN NaN NaN NaN 0 NaN NaN 0 7168500 637 11413 368 368 -0.08232464599302602 AEEAWCRG 8 Unmodified _AEEAWCRG_ 0 0 0 ENST00000570164.5_1_16:31501628-31501862:-|nuORF ENST00000570164.5_1_16:31501628-31501862:-|nuORF ENST00000570164.5_1_16:31501628-31501862:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.197802 920.381051 -0.20773 -9.5804E-05 1.2332 0.00056877 1.0255 0.00047296 461.1983321976998 49.947 1.5487 47.066 46.344 47.892 -2.8811 0.018922 0.00015589 NaN 28.487 83 43 2 NaN NaN NaN NaN 0 NaN NaN 0 13045000 638 11413 368 368 -0.08232464599302602 AEEAWCRG 8 Unmodified _AEEAWCRG_ 0 0 0 ENST00000570164.5_1_16:31501628-31501862:-|nuORF ENST00000570164.5_1_16:31501628-31501862:-|nuORF ENST00000570164.5_1_16:31501628-31501862:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.197802 920.381051 -0.072786 -3.3569E-05 1.2014 0.00055409 1.1286 0.00052052 461.1983015747146 50.233 1.5159 47.226 46.488 48.004 -3.0068 0.1795 0.00012653 NaN 28.487 79 43 2 NaN NaN NaN NaN 0 NaN NaN 0 9289100 639 11413 368 368 -0.08232464599302602 AEECHDCAY 9 Unmodified _AEECHDCAY_ 0 0 0 REV__ENSG00000227124|ENST00000652011|ZNF717 REV__ENSG00000227124|ENST00000652011|ZNF717 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2658081054688 2 520.676042 1039.33753 -0.583 -0.00030355 2.3339 0.0012152 1.7509 0.00091167 521.179001760013 38.058 0.45069 35.589 35.26 35.711 -2.4688 35 12 4 0 0 0 0.6171 1 7045 7045 0.073264 0 1 1282600 + 640 19730 369 369 795 795 -0.18056442158763275 AEEDAALQA 9 Unmodified _AEEDAALQA_ 0 0 0 nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;TCOF1|p.Q435Rfs*58|1|0.11|ENSG00000070814|chr5:150374973-150374973|C/-|frameshift_variant;TCOF1|p.S535Qfs*61|1|0.38|ENSG00000070814|chr5:150375448-150375448|C/-|frameshift_variant;nc|ENSG00000070814|Q13428-5|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2355651855469 2 459.214172 916.413791 0.081937 3.7626E-05 0.34385 0.0001579 0.42579 0.00019553 459.2141898680981 40.563 1.4479 38.074 37.614 39.062 -2.4896 87 40 3 0 0 0 0.069179 1 7250 7250 38.559 9.4772 1 3666200 641 1439 370 370 796 796 -0.04775978995485275 AEEDAALQA 9 Unmodified _AEEDAALQA_ 0 0 0 nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;TCOF1|p.Q435Rfs*58|1|0.11|ENSG00000070814|chr5:150374973-150374973|C/-|frameshift_variant;TCOF1|p.S535Qfs*61|1|0.38|ENSG00000070814|chr5:150375448-150375448|C/-|frameshift_variant;nc|ENSG00000070814|Q13428-5|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 459.214172 916.413791 0.33651 0.00015453 -0.010966 -5.0359E-06 0.32554 0.00014949 459.21410447320056 38.104 1.2743 38.104 37.683 38.957 0 0.076181 -0.00040619 NaN 38.559 68 35 3 NaN NaN NaN NaN 0 NaN NaN 0 5569400 642 1439 370 370 -0.04775978995485275 AEEDAALQA 9 Unmodified _AEEDAALQA_ 0 0 0 nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;TCOF1|p.Q435Rfs*58|1|0.11|ENSG00000070814|chr5:150374973-150374973|C/-|frameshift_variant;TCOF1|p.S535Qfs*61|1|0.38|ENSG00000070814|chr5:150375448-150375448|C/-|frameshift_variant;nc|ENSG00000070814|Q13428-5|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.214172 916.413791 -0.31714 -0.00014563 0.74381 0.00034157 0.42667 0.00019593 459.2144157663697 40.513 1.3763 37.878 37.369 38.745 -2.6348 -0.14959 0.00028702 NaN 38.559 77 38 3 NaN NaN NaN NaN 0 NaN NaN 0 7229400 643 1439 370 370 -0.04775978995485275 AEEDAALQA 9 Unmodified _AEEDAALQA_ 0 0 0 nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;TCOF1|p.Q435Rfs*58|1|0.11|ENSG00000070814|chr5:150374973-150374973|C/-|frameshift_variant;TCOF1|p.S535Qfs*61|1|0.38|ENSG00000070814|chr5:150375448-150375448|C/-|frameshift_variant;nc|ENSG00000070814|Q13428-5|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.214172 916.413791 -0.070176 -3.2226E-05 0.48362 0.00022208 0.41344 0.00018986 459.2142795850981 40.595 1.2656 38.055 37.675 38.94 -2.5398 0.027431 4.8053E-05 NaN 38.559 79 35 3 NaN NaN NaN NaN 0 NaN NaN 0 4503400 644 1439 370 370 -0.04775978995485275 AEEDEDEEWED 11 Unmodified _AEEDEDEEWED_ 0 0 0 REV__TRIM52|p.E66D|1|0.3|ENSG00000183718|chr5:181260616-181260616|C/A|missense_variant REV__TRIM52|p.E66D|1|0.3|ENSG00000183718|chr5:181260616-181260616|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2393798828125 3 465.828403 1394.46338 0.20973 9.77E-05 -0.51732 -0.00024098 -0.30758 -0.00014328 466.16239489981047 84.294 1.6816 84.294 83.823 85.505 0 114 47 3 0 0 0 0.96225 1 16396 16396 0.08335 0 1 70760000 + 645 25481 371 371 797 797 -0.21807405358640608 AEEDEDEEWED 11 Unmodified _AEEDEDEEWED_ 0 0 0 REV__TRIM52|p.E66D|1|0.3|ENSG00000183718|chr5:181260616-181260616|C/A|missense_variant REV__TRIM52|p.E66D|1|0.3|ENSG00000183718|chr5:181260616-181260616|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2452392578125 3 465.828403 1394.46338 0.28819 0.00013425 -0.52165 -0.000243 -0.23346 -0.00010875 466.1624382249964 87.485 1.7853 83.489 83.051 84.837 -3.9953 118 50 3 0 0 0 0.89124 1 16598 16598 0.00056442 0 1 26401000 + 646 25481 371 371 798 798 -0.21807405358640608 AEEDEYDVPPP 11 Unmodified _AEEDEYDVPPP_ 0 0 0 REV__nc|ENSG00000136754|Q8IZP0-11|ABI1 REV__nc|ENSG00000136754|Q8IZP0-11|ABI1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7647705078125 2 630.766965 1259.51938 NaN NaN NaN NaN NaN NaN NaN 38.29 1 38.29 37.79 38.79 0 0 0 0 0.23264 1 7096 7096 6.2058 2.2614 1 + 647 16346 372 372 799 799 -0.10000107660516733 AEEDMDEAIE 10 Unmodified _AEEDMDEAIE_ 0 0 0 MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant;MAP1B|p.E2165Gfs*3|1|0.32|ENSG00000131711|chr5:72199841-72199842|-/C|frameshift_variant;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant;ENSG00000131711|ENST00000296755|MAP1B MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3222045898438 2 576.224076 1150.4336 NaN NaN NaN NaN NaN NaN NaN 87.356 1 83.627 83.127 84.127 -3.7289 0 0 0 2.8426 1 16713 16713 0.063865 0.020077 1 648 3689 373 373 800 800 -0.13560015837651918 AEEDPPREAA 10 Unmodified _AEEDPPREAA_ 0 0 0 SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant;SH3BP2|p.V381Rfs*14|1|0.18|ENSG00000087266|chr4:2830040-2830041|-/C|frameshift_variant;ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-3|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2;ENST00000515737.5_1_4:2825262-2835558:+|nuORF SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7849731445312 2 542.74891 1083.48327 -0.3549 -0.00019262 -0.00012814 -6.9547E-08 -0.35502 -0.00019269 542.7488758581276 18.526 0.52557 17.201 16.943 17.469 -1.3251 34 14 3 0 0 0 0.28427 1 2789 2789 38.615 17.078 1 4513900 649 1712 374 374 801 801 -0.055135200467020695 AEEDPPREAA 10 Unmodified _AEEDPPREAA_ 0 0 0 SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant;SH3BP2|p.V381Rfs*14|1|0.18|ENSG00000087266|chr4:2830040-2830041|-/C|frameshift_variant;ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-3|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2;ENST00000515737.5_1_4:2825262-2835558:+|nuORF SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.74891 1083.48327 0.2666 0.0001447 -0.75285 -0.00040861 -0.48625 -0.00026391 542.7484889371499 17.279 0.55913 17.279 17.03 17.589 0 0.031651 -0.00031496 NaN 38.615 42 15 4 NaN NaN NaN NaN 0 NaN NaN 0 8079000 650 1712 374 374 -0.055135200467020695 AEEDPPREAA 10 Unmodified _AEEDPPREAA_ 0 0 0 SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant;SH3BP2|p.V381Rfs*14|1|0.18|ENSG00000087266|chr4:2830040-2830041|-/C|frameshift_variant;ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-3|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2;ENST00000515737.5_1_4:2825262-2835558:+|nuORF SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.74891 1083.48327 0.20068 0.00010892 -0.7598 -0.00041238 -0.55913 -0.00030347 542.7484629881327 18.574 0.61827 17.263 16.935 17.553 -1.3109 0.015079 -0.0003225 NaN 38.615 47 17 4 NaN NaN NaN NaN 0 NaN NaN 0 6878600 651 1712 374 374 -0.055135200467020695 AEEEAAVVAA 10 Unmodified _AEEEAAVVAA_ 0 0 0 nc|ENSG00000182095|O15417-2|TNRC18;TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24066162109375 2 480.237647 958.460741 0.32406 0.00015563 -0.50092 -0.00024056 -0.17686 -8.4933E-05 480.23737132260504 46.859 0.874 46.859 46.453 47.327 0 65 24 3 0 0 0 0.20847 1 8794 8794 43.858 7.7313 1 10877000 652 12500 375 375 802 802 -0.020151194443315035 AEEEAAVVAA 10 Unmodified _AEEEAAVVAA_ 0 0 0 nc|ENSG00000182095|O15417-2|TNRC18;TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24041748046875 2 480.237647 958.460741 -0.089835 -4.3142E-05 -0.085527 -4.1073E-05 -0.17536 -8.4215E-05 480.23756202835006 49.605 0.90934 46.724 46.344 47.253 -2.8811 68 25 3 0 0 0 0.12982 2 9406 9361;9406 52.268 13.806 1 16659000 653 12500 375 375 803;804 804 -0.020151194443315035 AEEEAAVVAA 10 Unmodified _AEEEAAVVAA_ 0 0 0 nc|ENSG00000182095|O15417-2|TNRC18;TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24053955078125 2 480.237647 958.460741 0.049007 2.3535E-05 -0.21044 -0.00010106 -0.16143 -7.7526E-05 480.23748436399586 49.778 0.88978 46.779 46.413 47.303 -2.999 73 25 4 0 0 0 0.12982 1 9122 9122 52.268 8.4101 1 12542000 654 12500 375 375 805 805 -0.020151194443315035 AEEEAAVVAA 10 Unmodified _AEEEAAVVAA_ 0 0 0 nc|ENSG00000182095|O15417-2|TNRC18;TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24053955078125 2 480.237647 958.460741 -0.11443 -5.4955E-05 0.025768 1.2375E-05 -0.088665 -4.258E-05 480.2376564042504 49.77 0.96036 46.763 46.416 47.376 -3.0068 80 27 4 0 0 0 0.12982 1 9116 9116 52.268 8.4101 1 16098000 655 12500 375 375 806 806 -0.020151194443315035 AEEEAQTH 8 Unmodified _AEEEAQTH_ 0 0 0 REV__ENSG00000135090|ENST00000392533|TAOK3 REV__ENSG00000135090|ENST00000392533|TAOK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2223205566406 2 457.696146 913.377739 -0.27762 -0.00012706 -1.3036 -0.00059663 -1.5812 -0.0007237 457.69611368354083 41.63 1.2438 38.995 38.221 39.465 -2.6348 82 35 3 0 0 0 0.73426 1 7663 7663 9.3474 0.75416 1 2462200 + 656 16245 376 376 807 807 -0.08241436172318117 AEEEEQQQLLR 11 Unmodified _AEEEEQQQLLR_ 0 0 0 REV__ENSG00000142039|ENST00000269967|CCDC97 REV__ENSG00000142039|ENST00000269967|CCDC97 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2283630371094 3 458.228284 1371.66302 NaN NaN NaN NaN NaN NaN NaN 34.979 1 32.726 32.226 33.226 -2.2527 0 0 0 0.22632 1 6148 6148 0.11104 0.0162 1 + 657 16655 377 377 808 808 -0.007942608295707032 AEEEETSIKAA 11 Unmodified _AEEEETSIKAA_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2531127929688 2 589.282783 1176.55101 0.39904 0.00023514 0.067151 3.9571E-05 0.46619 0.00027472 589.2827892044878 27.279 0.79545 27.279 26.939 27.735 0 69 22 5 0 0 0 0.05731 1 4801 4801 84.522 34.968 1 30127000 658 7795 378 378 809 809 -0.030201149065533173 AEEEETSIKAA 11 Unmodified _AEEEETSIKAA_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2630615234375 2 589.282783 1176.55101 0.71423 0.00042088 -0.21201 -0.00012494 0.50221 0.00029595 589.2826181565144 29.018 0.66552 27.263 26.946 27.611 -1.7552 49 18 3 0 0 0 0.34138 1 4965 4965 59.052 59.052 1 30963000 659 7795 378 378 810 810 -0.030201149065533173 AEEEETSIKAA 11 Unmodified _AEEEETSIKAA_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 589.282783 1176.55101 1.0991 0.0006477 -0.64589 -0.00038061 0.45324 0.00026709 589.2823762252925 29.117 0.62902 27.161 26.846 27.475 -1.9561 -0.055262 -0.00056399 NaN 84.522 46 17 3 NaN NaN NaN NaN 0 NaN NaN 0 25802000 660 7795 378 378 -0.030201149065533173 AEEEETSIKAA 11 Unmodified _AEEEETSIKAA_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 589.282783 1176.55101 0.43935 0.0002589 0.022186 1.3074E-05 0.46154 0.00027198 589.2827572040835 29.159 0.77001 27.163 26.864 27.634 -1.9962 -0.053575 0.00022338 NaN 84.522 53 21 3 NaN NaN NaN NaN 0 NaN NaN 0 25523000 661 7795 378 378 -0.030201149065533173 AEEEGPPVE 9 Unmodified _AEEEGPPVE_ 0 0 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7425842285156 2 478.714005 955.413456 0.32166 0.00015398 -0.50029 -0.0002395 -0.17864 -8.5516E-05 478.71373076145113 67.726 1.4907 64.399 63.791 65.282 -3.3268 56 42 2 0 0 0 0.84208 1 12942 12942 3.9444 3.9444 1 894880 662 5078 379 379 811 811 -0.06603398715321873 AEEEGRKMAA 10 Unmodified _AEEEGRKMAA_ 0 0 0 ENST00000590244.1_1_17:58543761-58603427:-|nuORF ENST00000590244.1_1_17:58543761-58603427:-|nuORF ENST00000590244.1_1_17:58543761-58603427:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7730102539062 2 546.26113 1090.50771 0.21312 0.00011642 -0.33556 -0.0001833 -0.12244 -6.6882E-05 546.2610805641935 14.163 0.31403 14.163 14.036 14.35 0 20 8 4 0 0 0 0.4942 1 2089 2089 24.991 7.8781 1 13116000 663 11598 380 380 812 812 -0.03392583164827556 AEEEHPAIGL 10 Unmodified _AEEEHPAIGL_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2639770507812 2 533.264196 1064.51384 0.044133 2.3535E-05 0.35059 0.00018696 0.39472 0.00021049 533.2642558993098 18.041 0.32116 18.041 17.84 18.161 0 19 8 3 0 0 0 0.20847 1 2865 2865 43.858 5.2435 1 3303700 + 664 19439 381 381 813 813 -0.015837416616705013 AEEEIQLRV 9 Unmodified _AEEEIQLRV_ 0 0 0 nc|ENSG00000112365|O43167-2|ZBTB24;ZBTB24|p.Q553Sfs*10|1|0.12|ENSG00000112365|chr6:109466288-109466289|-/A|frameshift_variant;ENSG00000112365|ENST00000230122|ZBTB24;ZBTB24|p.D236Mfs*74|2|0.09|ENSG00000112365|chr6:109481322-109481322|T/-|frameshift_variant nc|ENSG00000112365|O43167-2|ZBTB24 nc|ENSG00000112365|O43167-2|ZBTB24 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7922973632812 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 100.73 1 100.73 100.23 101.23 0 0 0 0 0.055781 1 19761 19761 49.554 16.769 1 665 2692 382 382 814 814 0.032325202637593975 AEEEIQLRV 9 Unmodified _AEEEIQLRV_ 0 0 0 nc|ENSG00000112365|O43167-2|ZBTB24;ZBTB24|p.Q553Sfs*10|1|0.12|ENSG00000112365|chr6:109466288-109466289|-/A|frameshift_variant;ENSG00000112365|ENST00000230122|ZBTB24;ZBTB24|p.D236Mfs*74|2|0.09|ENSG00000112365|chr6:109481322-109481322|T/-|frameshift_variant nc|ENSG00000112365|O43167-2|ZBTB24 nc|ENSG00000112365|O43167-2|ZBTB24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7942504882812 2 543.793121 1085.57169 0.015047 8.1826E-06 -0.02494 -1.3562E-05 -0.0098926 -5.3795E-06 543.7932045439228 104.57 0.34711 100.35 100.2 100.54 -4.2183 15 9 2 0 0 0 0.039785 4 20588 20565;20567;20586;20588 75.761 23.32 1 895770 666 2692 382 382 815;816;817;818 818 0.032325202637593975 AEEEIQLRV 9 Unmodified _AEEEIQLRV_ 0 0 0 nc|ENSG00000112365|O43167-2|ZBTB24;ZBTB24|p.Q553Sfs*10|1|0.12|ENSG00000112365|chr6:109466288-109466289|-/A|frameshift_variant;ENSG00000112365|ENST00000230122|ZBTB24;ZBTB24|p.D236Mfs*74|2|0.09|ENSG00000112365|chr6:109481322-109481322|T/-|frameshift_variant nc|ENSG00000112365|O43167-2|ZBTB24 nc|ENSG00000112365|O43167-2|ZBTB24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7844848632812 2 543.793121 1085.57169 0.15996 8.6984E-05 -0.43022 -0.00023395 -0.27027 -0.00014697 543.7926651129225 104.82 0.4784 100.47 100.14 100.62 -4.346 24 13 3 0 0 0 0.10573 3 20061 20044;20061;20090 53.833 17.706 1 1414400 667 2692 382 382 819;820;821 820 0.032325202637593975 AEEEIQLRV 9 Unmodified _AEEEIQLRV_ 0 0 0 nc|ENSG00000112365|O43167-2|ZBTB24;ZBTB24|p.Q553Sfs*10|1|0.12|ENSG00000112365|chr6:109466288-109466289|-/A|frameshift_variant;ENSG00000112365|ENST00000230122|ZBTB24;ZBTB24|p.D236Mfs*74|2|0.09|ENSG00000112365|chr6:109481322-109481322|T/-|frameshift_variant nc|ENSG00000112365|O43167-2|ZBTB24 nc|ENSG00000112365|O43167-2|ZBTB24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7933959960938 2 543.793121 1085.57169 0.81974 0.00044577 -1.0374 -0.00056411 -0.21762 -0.00011834 543.792573624239 104.47 0.38853 100.41 100.27 100.66 -4.0543 15 10 2 0 0 0 0.094316 2 20081 20081;20122 57.722 21.595 1 1203000 668 2692 382 382 822;823 822 0.032325202637593975 AEEELEWQVA 10 Unmodified _AEEELEWQVA_ 0 0 0 nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2794799804688 2 602.280043 1202.54553 1.0503 0.0006326 -0.68748 -0.00041406 0.36286 0.00021854 602.279685354574 129.18 0.58459 124.55 124.26 124.84 -4.6292 25 16 2 0 0 0 0.25854 3 25439 25419;25439;25508 29.841 20.463 1 2242400 669 4170 383 383 824;825;826 825 -0.047637936983846885 AEEELEWQVA 10 Unmodified _AEEELEWQVA_ 0 0 0 nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2800903320312 2 602.280043 1202.54553 0.43258 0.00026053 0.35322 0.00021274 0.78579 0.00047327 602.7819794756664 129.36 0.72133 124.55 124.2 124.92 -4.817 28 20 2 0 0 0 0.023815 3 24813 24810;24813;24859 88.954 59.872 1 2863500 670 4170 383 383 827;828;829 828 -0.047637936983846885 AEEELEWQVA 10 Unmodified _AEEELEWQVA_ 0 0 0 nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2901000976562 2 602.280043 1202.54553 0.24317 0.00014646 -0.62961 -0.0003792 -0.38644 -0.00023275 602.2795964918711 129.27 0.66537 124.53 124.19 124.85 -4.7408 26 18 2 0 0 0 0.18999 3 24848 24848;24851;24909 43.772 34.122 1 1786500 671 4170 383 383 830;831;832 830 -0.047637936983846885 AEEENFKKP 9 Unmodified _AEEENFKKP_ 0 0 0 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7760620117188 2 546.272021 1090.52949 0.3309 0.00018076 -0.20564 -0.00011233 0.12526 6.8425E-05 546.271888745972 21.913 2.1853 21.913 20.742 22.927 0 213 62 5 0 0 0 0.072372 5 3700 3557;3647;3700;3749;3752 63.961 44.704 1 124720000 672 3272 384 384 833;834;835;836;837 835 -0.012154551446201367 AEEENFKKP 9 Unmodified _AEEENFKKP_ 0 0 0 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7763671875 2 546.272021 1090.52949 -0.032101 -1.7536E-05 0.16985 9.2786E-05 0.13775 7.525E-05 546.2720898341606 23.395 2.3068 21.941 20.801 23.107 -1.4535 223 65 5 0 0 0 0.21532 3 3727 3682;3727;3819 36.506 17.819 1 88899000 673 3272 384 384 838;839;840 839 -0.012154551446201367 AEEENFKKP 9 Unmodified _AEEENFKKP_ 0 0 0 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7769165039062 2 546.272021 1090.52949 -0.30912 -0.00016886 0.36919 0.00020168 0.060068 3.2813E-05 546.2721874417598 23.688 2.7126 21.899 20.851 23.564 -1.7886 234 78 5 0 0 0 0.27986 3 3743 3743;3794;3848 32.786 14.413 1 74350000 674 3272 384 384 841;842;843 841 -0.012154551446201367 AEEEPPSSA 9 Unmodified _AEEEPPSSA_ 0 0 0 USP35|p.M354Wfs*119|1|0.4|ENSG00000118369|chr11:78200664-78200664|C/-|frameshift_variant;USP35|p.T655Pfs*23|1|0.33|ENSG00000118369|chr11:78209810-78209810|C/-|frameshift_variant;ENSG00000118369|ENST00000529308|USP35 USP35|p.M354Wfs*119|1|0.4|ENSG00000118369|chr11:78200664-78200664|C/-|frameshift_variant USP35|p.M354Wfs*119|1|0.4|ENSG00000118369|chr11:78200664-78200664|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23779296875 2 458.698355 915.382156 NaN NaN NaN NaN NaN NaN NaN 25.945 1 25.945 25.445 26.445 0 0 0 0 0.22621 1 4524 4524 15.847 2.3393 1 675 3031 385 385 844 844 -0.07891971749415916 AEEEQMDPFY 10 Unmodified _AEEEQMDPFY_ 0 0 0 REV__ENSG00000178409|ENST00000369042|BEND3 REV__ENSG00000178409|ENST00000369042|BEND3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.752685546875 2 629.750261 1257.48597 0.31318 0.00019723 -0.29639 -0.00018665 0.016792 1.0575E-05 629.7504723380035 16.059 0.27854 16.059 15.885 16.164 0 15 7 3 0 0 0 0.72988 1 2478 2478 8.1555 2.8586 1 817500 + 676 13193 386 386 845 845 -0.13247432704065432 AEEEQMDPFY 10 Unmodified _AEEEQMDPFY_ 0 0 0 REV__ENSG00000178409|ENST00000369042|BEND3 REV__ENSG00000178409|ENST00000369042|BEND3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 629.750261 1257.48597 0.31318 0.00019723 -0.29639 -0.00018665 0.016792 1.0575E-05 629.7504723380035 16.059 0.27854 16.059 15.885 16.164 0 0.070365 -0.0013319 NaN 8.1555 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 817500 + 677 13193 386 386 -0.13247432704065432 AEEEQMDPFY 10 Unmodified _AEEEQMDPFY_ 0 0 0 REV__ENSG00000178409|ENST00000369042|BEND3 REV__ENSG00000178409|ENST00000369042|BEND3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 629.750261 1257.48597 -0.22358 -0.0001408 1.1812 0.00074385 0.9576 0.00060305 629.7509531776401 17.19 0.20873 15.918 15.765 15.974 -1.2722 -0.070365 0.00052916 NaN 8.1555 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 497080 + 678 13193 386 386 -0.13247432704065432 AEEERRIAA 9 Unmodified _AEEERRIAA_ 0 0 0 ENST00000515116.1_1_4:666291-667257:-|nuORF;ENSG00000169020|ENST00000304312|ATP5ME;ENST00000505852.1_1_4:666291-668103:-|nuORF ENST00000515116.1_1_4:666291-667257:-|nuORF ENST00000515116.1_1_4:666291-667257:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.267333984375 2 522.775262 1043.53597 0.1247 6.5189E-05 -0.27699 -0.0001448 -0.15229 -7.9615E-05 522.7751570903783 17.327 0.84943 17.327 17.137 17.987 0 73 23 5 0 0 0 0.1428 1 2776 2776 29.082 18.931 1 224190000 679 5958 387 387 846 846 0.01594482806740416 AEEERRIAA 9 Unmodified _AEEERRIAA_ 0 0 0 ENST00000515116.1_1_4:666291-667257:-|nuORF;ENSG00000169020|ENST00000304312|ATP5ME;ENST00000505852.1_1_4:666291-668103:-|nuORF ENST00000515116.1_1_4:666291-667257:-|nuORF ENST00000515116.1_1_4:666291-667257:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2717895507812 2 522.775262 1043.53597 -1.0191 -0.00053274 1.3175 0.00068876 0.29844 0.00015602 522.7760618380993 18.531 0.84948 17.205 16.978 17.827 -1.3251 56 23 3 0 0 0 0.19359 1 2791 2791 56.177 35.723 1 137540000 680 5958 387 387 847 847 0.01594482806740416 AEEERRIAA 9 Unmodified _AEEERRIAA_ 0 0 0 ENST00000515116.1_1_4:666291-667257:-|nuORF;ENSG00000169020|ENST00000304312|ATP5ME;ENST00000505852.1_1_4:666291-668103:-|nuORF ENST00000515116.1_1_4:666291-667257:-|nuORF ENST00000515116.1_1_4:666291-667257:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2672729492188 2 522.775262 1043.53597 -1.0651 -0.00055681 0.83002 0.00043391 -0.2351 -0.0001229 522.7757410865216 18.75 0.73476 17.115 16.9 17.634 -1.6351 71 20 5 0 0 0 0.089388 1 2783 2783 66.457 47.2 1 102870000 681 5958 387 387 848 848 0.01594482806740416 AEEETLEKHL 10 Unmodified _AEEETLEKHL_ 0 0 0 ENSG00000225830|ENST00000355832|ERCC6 ENSG00000225830|ENST00000355832|ERCC6 ENSG00000225830|ENST00000355832|ERCC6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.36090087890625 3 400.203187 1197.58773 -0.2612 -0.00010453 0.11899 4.762E-05 -0.14221 -5.6912E-05 400.20316080185665 18.349 0.37723 17.038 16.868 17.245 -1.3109 11 10 2 0 0 0 0.91149 1 2981 2981 0.13989 0 1 172240 682 7788 388 388 849 849 -0.003158182899824169 AEEFAAAVNTA 11 Unmodified _AEEFAAAVNTA_ 0 0 0 REV__ENSG00000123595|ENST00000464506|RAB9A REV__ENSG00000123595|ENST00000464506|RAB9A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7796630859375 2 547.261653 1092.50875 0.044162 2.4168E-05 1.9703 0.0010783 2.0145 0.0011024 547.7637829657394 17.841 0.21121 16.53 16.475 16.686 -1.3109 8 5 2 0 0 0 0.45291 1 2893 2893 32.037 5.7693 1 268020 + 683 15737 389 389 850 850 -0.03380045524295383 AEEFAAAVNTA 11 Unmodified _AEEFAAAVNTA_ 0 0 0 REV__ENSG00000123595|ENST00000464506|RAB9A REV__ENSG00000123595|ENST00000464506|RAB9A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 547.261653 1092.50875 0.25072 0.00013721 -0.19223 -0.0001052 0.058498 3.2014E-05 547.2614767736482 16.73 0.20183 16.73 16.578 16.78 0 0.099795 -0.00035522 NaN 32.037 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 896700 + 684 15737 389 389 -0.03380045524295383 AEEFAAAVNTA 11 Unmodified _AEEFAAAVNTA_ 0 0 0 REV__ENSG00000123595|ENST00000464506|RAB9A REV__ENSG00000123595|ENST00000464506|RAB9A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.261653 1092.50875 0.044162 2.4168E-05 1.9703 0.0010783 2.0145 0.0011024 547.7637829657394 17.841 0.21121 16.53 16.475 16.686 -1.3109 -0.099795 0.0020117 NaN 32.037 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 268020 + 685 15737 389 389 -0.03380045524295383 AEEFAHQF 8 Unmodified _AEEFAHQF_ 0 0 0 nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;ENST00000562659.1_1_16:85698640-85699994:+|nuORF nc|ENSG00000131149|Q14687-2|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26513671875 2 489.719424 977.424296 -0.029623 -1.4507E-05 0.16389 8.0262E-05 0.13427 6.5755E-05 489.7194418595041 70.096 0.6359 70.096 69.777 70.413 0 46 17 3 0 0 0 0.07389 1 13575 13575 71.134 37.031 1 10660000 686 3661 390 390 851 851 -0.065319515503802 AEEFAHQF 8 Unmodified _AEEFAHQF_ 0 0 0 nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;ENST00000562659.1_1_16:85698640-85699994:+|nuORF nc|ENSG00000131149|Q14687-2|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25433349609375 2 489.719424 977.424296 0.017334 8.4889E-06 0.17863 8.748E-05 0.19597 9.5969E-05 489.71947348170886 73.477 0.77679 70.166 69.85 70.626 -3.3107 57 21 4 0 0 0 0.12867 1 14278 14278 57.471 30.588 1 16544000 687 3661 390 390 852 852 -0.065319515503802 AEEFAHQF 8 Unmodified _AEEFAHQF_ 0 0 0 nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;ENST00000562659.1_1_16:85698640-85699994:+|nuORF nc|ENSG00000131149|Q14687-2|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2539367675781 2 489.719424 977.424296 0.3189 0.00015617 -0.018755 -9.1846E-06 0.30014 0.00014698 489.71934138478673 73.766 0.69261 70.089 69.757 70.45 -3.6764 52 19 4 0 0 0 0.059776 1 13902 13902 112.59 72.636 1 12374000 688 3661 390 390 853 853 -0.065319515503802 AEEFAHQF 8 Unmodified _AEEFAHQF_ 0 0 0 nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;ENST00000562659.1_1_16:85698640-85699994:+|nuORF nc|ENSG00000131149|Q14687-2|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2763366699219 2 489.719424 977.424296 0.12911 6.3229E-05 0.060003 2.9385E-05 0.18912 9.2614E-05 489.71934945884976 73.696 0.74427 70.102 69.723 70.467 -3.594 58 20 4 0 0 0 0.0039758 1 13991 13991 115.69 44.558 1 14133000 689 3661 390 390 854 854 -0.065319515503802 AEEFGNLTP 9 Unmodified _AEEFGNLTP_ 0 0 0 POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant;POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant;POLR3B|p.M1020Nfs*18|1|0.13|ENSG00000013503|chr12:106501392-106501393|-/A|frameshift_variant;ENSG00000013503|ENST00000228347|POLR3B;POLR3B|p.T279Hfs*46|1|0.25|ENSG00000013503|chr12:106393136-106393137|-/T|frameshift_variant POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2576599121094 2 489.232364 976.450176 0.53186 0.0002602 -0.033325 -1.6304E-05 0.49853 0.0002439 489.23221909888747 103.87 1.619 103.87 102.86 104.48 0 96 46 3 0 0 0 0.13201 1 20375 20375 47.987 29.373 1 12099000 690 1100 391 391 855 855 -0.0389910209877371 AEEFKVPAA 9 Unmodified _AEEFKVPAA_ 0 0 0 ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1 ENSG00000120686|ENST00000239878|UFM1 ENSG00000120686|ENST00000239878|UFM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2532043457031 2 481.2531 960.491647 0.44213 0.00021278 -0.084305 -4.0572E-05 0.35782 0.0001722 481.2529912921518 79.439 1.427 79.439 78.683 80.11 0 138 40 4 0 0 0 0.010502 6 15491 15361;15401;15444;15491;15508;15534 103.42 55.671 1 58446000 691 3145 392 392 856;857;858;859;860;861 859 0.009820786605587273 AEEFKVPAA 9 Unmodified _AEEFKVPAA_ 0 0 0 ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1 ENSG00000120686|ENST00000239878|UFM1 ENSG00000120686|ENST00000239878|UFM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.253173828125 2 481.2531 960.491647 0.029095 1.4002E-05 0.5818 0.00027999 0.61089 0.00029399 481.25330423356525 82.992 1.477 79.384 78.604 80.081 -3.6079 155 41 5 0 0 0 0.019191 6 16167 16123;16167;16215;16233;16263;16312 93.166 49.308 1 53951000 692 3145 392 392 862;863;864;865;866;867 863 0.009820786605587273 AEEFKVPAA 9 Unmodified _AEEFKVPAA_ 0 0 0 ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1 ENSG00000120686|ENST00000239878|UFM1 ENSG00000120686|ENST00000239878|UFM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2532043457031 2 481.2531 960.491647 0.14011 6.7429E-05 0.35542 0.00017105 0.49553 0.00023848 481.25320431507856 83.296 1.4409 79.422 78.568 80.009 -3.8736 135 40 4 0 0 0 0.019191 8 15771 15730;15755;15771;15813;15857;15904;15907;15924 93.166 45.417 1 48806000 693 3145 392 392 868;869;870;871;872;873;874;875 870 0.009820786605587273 AEEFKVPAA 9 Unmodified _AEEFKVPAA_ 0 0 0 ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1 ENSG00000120686|ENST00000239878|UFM1 ENSG00000120686|ENST00000239878|UFM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2452087402344 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 84.565 1 80.655 80.155 81.155 -3.9093 0 0 0 0.19687 1 16075 16075 8.1555 8.0277 1 694 3145 392 392 876 876 0.009820786605587273 AEEFKVPAA 9 Unmodified _AEEFKVPAA_ 0 0 0 ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1 ENSG00000120686|ENST00000239878|UFM1 ENSG00000120686|ENST00000239878|UFM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25323486328125 2 481.2531 960.491647 -0.16247 -7.8188E-05 0.7202 0.0003466 0.55773 0.00026841 481.2533904723 83.001 1.4887 79.303 78.481 79.97 -3.6985 161 42 5 0 0 0 0.019191 8 15794 15750;15794;15837;15881;15925;15944;15949;15961 93.166 45.417 1 61137000 695 3145 392 392 877;878;879;880;881;882;883;884 878 0.009820786605587273 AEEFPNLAV 9 Unmodified _AEEFPNLAV_ 0 0 0 nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2 nc|ENSG00000187742|Q96T21-2|SECISBP2 nc|ENSG00000187742|Q96T21-2|SECISBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 990.3733520507812 1 989.493838 988.486562 0.34963 0.00034595 -0.62953 -0.00062292 -0.2799 -0.00027696 989.4931364882774 147.27 0.91235 142.15 141.71 142.62 -5.1154 52 25 3 0 0 0 0.10573 1 28520 28520 53.833 29.812 1 11413000 696 7126 393 393 885 885 -0.00814225202043417 AEEFPNLAV 9 Unmodified _AEEFPNLAV_ 0 0 0 nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2 nc|ENSG00000187742|Q96T21-2|SECISBP2 nc|ENSG00000187742|Q96T21-2|SECISBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 990.3804321289062 1 989.493838 988.486562 0.44545 0.00044077 -0.61796 -0.00061146 -0.17251 -0.0001707 989.4931106315247 147.09 1.055 142.09 141.6 142.66 -5 58 29 3 0 0 0 0.086396 1 28524 28524 60.074 32.445 1 10450000 697 7126 393 393 886 886 -0.00814225202043417 AEEFPNLAV 9 Unmodified _AEEFPNLAV_ 0 0 0 nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2 nc|ENSG00000187742|Q96T21-2|SECISBP2 nc|ENSG00000187742|Q96T21-2|SECISBP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 989.493838 988.486562 0.53471 0.0005291 -0.77609 -0.00076794 -0.24138 -0.00023884 989.4930843188968 141.89 0.86961 141.89 141.5 142.37 0 -0.15942 -0.00016917 NaN 60.074 42 24 2 NaN NaN NaN NaN 0 NaN NaN 0 9167500 698 7126 393 393 -0.00814225202043417 AEEFPNLAV 9 Unmodified _AEEFPNLAV_ 0 0 0 nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2 nc|ENSG00000187742|Q96T21-2|SECISBP2 nc|ENSG00000187742|Q96T21-2|SECISBP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 989.493838 988.486562 0.033625 3.3272E-05 -0.3501 -0.00034642 -0.31648 -0.00031315 989.4933437195976 146.74 0.93748 142.05 141.68 142.61 -4.6868 0.0062658 0.00025235 NaN 60.074 46 26 2 NaN NaN NaN NaN 0 NaN NaN 0 15208000 699 7126 393 393 -0.00814225202043417 AEEGARLLA 9 Unmodified _AEEGARLLA_ 0 0 0 SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2 SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2480163574219 2 465.256174 928.497795 0.10396 4.8367E-05 0.041142 1.9142E-05 0.1451 6.7509E-05 465.2561819567488 53.761 1.3077 53.761 53.422 54.729 0 65 36 2 0 0 0 0.10699 3 10268 10195;10268;10294 53.404 5.7548 1 3925000 700 5430 394 394 887;888;889 888 0.030685968920806772 AEEGARLLA 9 Unmodified _AEEGARLLA_ 0 0 0 SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2 SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24090576171875 2 465.256174 928.497795 -0.22603 -0.00010516 0.73831 0.0003435 0.51228 0.00023834 465.2563207456507 56.112 0.64523 53.218 52.933 53.578 -2.8944 30 18 2 0 0 0 0.080883 5 10747 10713;10720;10747;10768;10814 61.602 5.5697 1 3119100 701 5430 394 394 890;891;892;893;894 892 0.030685968920806772 AEEGARLLA 9 Unmodified _AEEGARLLA_ 0 0 0 SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2 SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2557067871094 2 465.256174 928.497795 0.029001 1.3493E-05 0.6438 0.00029953 0.67281 0.00031303 465.2563732617557 56.319 0.91235 53.129 52.846 53.759 -3.1895 33 25 2 0 0 0 0.13904 2 10493 10446;10493 45.74 2.0636 1 4210900 702 5430 394 394 895;896 896 0.030685968920806772 AEEGARLLA 9 Unmodified _AEEGARLLA_ 0 0 0 SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2 SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2562561035156 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 56.166 1 52.99 52.49 53.49 -3.1761 0 0 0 0.11838 1 10444 10444 34.932 0.53034 1 703 5430 394 394 897 897 0.030685968920806772 AEEGARLLA 9 Unmodified _AEEGARLLA_ 0 0 0 SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2 SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25634765625 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 56.396 1 53.22 52.72 53.72 -3.1761 0 0 0 0.031766 1 10491 10491 61.602 5.4249 1 704 5430 394 394 898 898 0.030685968920806772 AEEGARLLA 9 Unmodified _AEEGARLLA_ 0 0 0 SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2 SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant SSR2|p.K27N|1|0.34|ENSG00000163479|chr1:156020087-156020087|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2572937011719 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 56.627 1 53.451 52.951 53.951 -3.1761 0 0 0 0.11838 1 10541 10541 34.932 5.8505 1 705 5430 394 394 899 899 0.030685968920806772 AEEGINLQS 9 Unmodified _AEEGINLQS_ 0 0 0 REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23675537109375 2 480.735271 959.45599 0.050348 2.4204E-05 0.21553 0.00010361 0.26588 0.00012782 480.7353820424743 39.379 1.2942 36.937 35.947 37.241 -2.4419 54 36 2 0 0 0 0.56137 1 6975 6975 21.537 1.1224 1 1563600 + 706 18135 395 395 900 900 -0.025360035871017317 AEEGKRAEA 9 Unmodified _AEEGKRAEA_ 0 0 0 nc|ENSG00000129353|Q8IWA5-2|SLC44A2 nc|ENSG00000129353|Q8IWA5-2|SLC44A2 nc|ENSG00000129353|Q8IWA5-2|SLC44A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2425537109375 2 480.740888 959.467223 0.35314 0.00016977 -1.301 -0.00062543 -0.94784 -0.00045566 480.74007259224226 20.582 0.49883 19.186 18.964 19.463 -1.3966 28 13 3 0 0 0 0.10699 1 3434 3434 53.404 7.7044 1 4068900 707 12315 396 396 901 901 -0.01413181492955573 AEEGLGGLPS 10 Unmodified _AEEGLGGLPS_ 0 0 0 nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;ENST00000453662.6_1_2:114353026-114353401:+|nuORF;ENST00000488147.1_1_1:17367-18318:-|nuORF;ENST00000400706.3_1_12:87289-88257:+|nuORF nc|ENSG00000292372|Q9NQA3|WASH6P nc|ENSG00000292372|Q9NQA3|WASH6P MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24591064453125 2 465.232364 928.450176 0.30506 0.00014192 -0.84129 -0.00039139 -0.53623 -0.00024947 465.23199145148055 75.52 0.78654 75.52 75.067 75.853 0 34 22 2 0 0 0 0.51199 1 14612 14612 24.021 2.4836 1 2062600 708 6722 397 397 902 902 -0.01691102098743613 AEEGLGGLPS 10 Unmodified _AEEGLGGLPS_ 0 0 0 nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;ENST00000453662.6_1_2:114353026-114353401:+|nuORF;ENST00000488147.1_1_1:17367-18318:-|nuORF;ENST00000400706.3_1_12:87289-88257:+|nuORF nc|ENSG00000292372|Q9NQA3|WASH6P nc|ENSG00000292372|Q9NQA3|WASH6P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.249267578125 2 465.232364 928.450176 -0.098086 -4.5633E-05 -0.35489 -0.00016511 -0.45297 -0.00021074 465.232136197706 79.533 1.0482 75.729 75.128 76.176 -3.8048 43 29 2 0 0 0 0.054771 2 15041 15019;15041 43.858 8.0228 1 1501600 709 6722 397 397 903;904 904 -0.01691102098743613 AEEGPPLGA 9 Unmodified _AEEGPPLGA_ 0 0 0 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 841.4150390625 1 840.409774 839.402498 0.21118 0.00017748 -0.18684 -0.00015702 0.024341 2.0456E-05 840.4097143235003 55.838 1.2724 52.955 52.283 53.556 -2.8837 51 36 2 0 0 0 0.22334 1 10701 10701 36.044 3.9272 1 3545800 710 6300 398 398 905 905 -0.023627562989531725 AEEGPPLGA 9 Unmodified _AEEGPPLGA_ 0 0 0 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 841.412841796875 1 840.409774 839.402498 0.18083 0.00015197 0.22767 0.00019133 0.4085 0.00034331 840.4097707572258 56.312 1.3336 53.136 52.316 53.65 -3.1761 57 37 2 0 0 0 0.35443 1 10398 10398 28.487 5.3384 1 4450400 711 6300 398 398 906 906 -0.023627562989531725 AEEGPPLGA 9 Unmodified _AEEGPPLGA_ 0 0 0 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 840.409774 839.402498 0.52061 0.00043752 -0.30486 -0.00025621 0.21575 0.00018132 840.4093646965432 52.969 1.4228 52.969 52.251 53.674 0 -0.047833 -0.00020487 NaN 36.044 61 39 2 NaN NaN NaN NaN 0 NaN NaN 0 4693300 712 6300 398 398 -0.023627562989531725 AEEGPPLGA 9 Unmodified _AEEGPPLGA_ 0 0 0 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 840.409774 839.402498 0.3019 0.00025372 0.055627 4.675E-05 0.35752 0.00030047 840.4097114069547 56.197 1.2983 53.008 52.355 53.653 -3.1895 -0.0088933 9.8083E-05 NaN 36.044 49 36 2 NaN NaN NaN NaN 0 NaN NaN 0 5121000 713 6300 398 398 -0.023627562989531725 AEEGPRRRWRR 11 Unmodified _AEEGPRRRWRR_ 0 0 0 ENST00000442267.2_1_4:141622749-141677260:-|nuORF ENST00000442267.2_1_4:141622749-141677260:-|nuORF ENST00000442267.2_1_4:141622749-141677260:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2707214355469 3 490.271263 1467.79196 NaN NaN NaN NaN NaN NaN NaN 25.451 1 23.598 23.098 24.098 -1.8534 0 0 0 0.22632 1 4182 4182 0.094841 0.094277 1 714 9898 399 399 907 907 0.0767760343453574 AEEGSVPIEL 10 Unmodified _AEEGSVPIEL_ 0 0 0 REV__nc|ENSG00000187116|A6NI73-4|LILRA5 REV__nc|ENSG00000187116|A6NI73-4|LILRA5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2672729492188 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 102.9 1 98.579 98.079 99.079 -4.3208 0 0 0 0.22535 1 19702 19702 20.454 3.5113 1 + 715 22292 400 400 908 908 -0.001302772387589357 AEEGTRNVVA 10 Unmodified _AEEGTRNVVA_ 0 0 0 nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1 nc|ENSG00000111530|Q86VP6-2|CAND1 nc|ENSG00000111530|Q86VP6-2|CAND1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6856079101562 2 523.26727 1044.51999 0.18891 9.8852E-05 -2.8639 -0.0014986 -2.675 -0.0013998 523.266198876033 21.918 0.24738 21.918 21.77 22.017 0 17 6 4 0 0 0 0.14025 1 3677 3677 49.742 11.566 1 3070900 716 2625 401 401 909 909 -0.0004922343014186481 AEEGTRNVVA 10 Unmodified _AEEGTRNVVA_ 0 0 0 nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1 nc|ENSG00000111530|Q86VP6-2|CAND1 nc|ENSG00000111530|Q86VP6-2|CAND1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.26727 1044.51999 -0.35854 -0.00018761 -0.17074 -8.9341E-05 -0.52927 -0.00027695 523.267391036493 23.519 0.31795 21.73 21.526 21.844 -1.7886 -0.087171 0.00037249 NaN 49.742 22 8 5 NaN NaN NaN NaN 0 NaN NaN 0 3357700 717 2625 401 401 -0.0004922343014186481 AEEGVPAPLP 10 Unmodified _AEEGVPAPLP_ 0 0 0 ENSG00000137331|ENST00000259874|IER3 ENSG00000137331|ENST00000259874|IER3 ENSG00000137331|ENST00000259874|IER3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2585144042969 2 490.258382 978.502212 0.58982 0.00028916 -0.58487 -0.00028674 0.0049485 2.426E-06 490.2581453682343 102.46 1.2825 102.46 101.92 103.2 0 109 36 5 0 0 0 0.0047892 9 20218 20035;20077;20079;20131;20176;20200;20218;20221;20268 103.75 39.512 1 25151000 718 4079 402 402 910;911;912;913;914;915;916;917;918 916 0.012100613149868877 AEEGVPAPLP 10 Unmodified _AEEGVPAPLP_ 0 0 0 ENSG00000137331|ENST00000259874|IER3 ENSG00000137331|ENST00000259874|IER3 ENSG00000137331|ENST00000259874|IER3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2577209472656 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 90.184 1 90.184 89.684 90.684 0 0 0 0 2.8426 1 17616 17616 0.51642 0 1 719 4079 402 402 919 919 0.012100613149868877 AEEGVPAPLP 10 Unmodified _AEEGVPAPLP_ 0 0 0 ENSG00000137331|ENST00000259874|IER3 ENSG00000137331|ENST00000259874|IER3 ENSG00000137331|ENST00000259874|IER3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2584533691406 2 490.258382 978.502212 -0.28649 -0.00014045 0.58135 0.00028501 0.29486 0.00014456 490.25864506676595 106.87 0.87119 102.6 102.18 103.05 -4.2638 53 24 3 0 0 0 0.0283 3 21021 20975;21021;21113 30.239 23.651 1 3001400 720 4079 402 402 920;921;922 921 0.012100613149868877 AEEGVPAPLP 10 Unmodified _AEEGVPAPLP_ 0 0 0 ENSG00000137331|ENST00000259874|IER3 ENSG00000137331|ENST00000259874|IER3 ENSG00000137331|ENST00000259874|IER3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2585144042969 2 490.258382 978.502212 0.077007 3.7753E-05 0.18794 9.2141E-05 0.26495 0.00012989 490.25839915883455 107.09 0.8261 102.68 102.27 103.09 -4.4121 53 23 3 0 0 0 0.033646 5 20550 20472;20550;20580;20589;20591 49.933 22.349 1 2844600 721 4079 402 402 923;924;925;926;927 924 0.012100613149868877 AEEGVPAPLP 10 Unmodified _AEEGVPAPLP_ 0 0 0 ENSG00000137331|ENST00000259874|IER3 ENSG00000137331|ENST00000259874|IER3 ENSG00000137331|ENST00000259874|IER3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2584533691406 2 490.258382 978.502212 0.47598 0.00023335 -0.060317 -2.9571E-05 0.41567 0.00020378 490.25826622618285 106.7 0.85966 102.61 102.23 103.09 -4.0913 52 24 3 0 0 0 0.046791 7 20521 20475;20479;20492;20521;20561;20565;20612 56.177 24.083 1 2799000 722 4079 402 402 928;929;930;931;932;933;934 931 0.012100613149868877 AEEHRRLPL 9 Unmodified _AEEHRRLPL_ 0 0 0 REV__ENST00000527245.5_1_11:124746577-124746715:+|nuORF REV__ENST00000527245.5_1_11:124746577-124746715:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2151794433594 3 374.21224 1119.61489 0.67202 0.00025148 -1.1428 -0.00042765 -0.4708 -0.00017618 374.21172293680553 23.998 0.42068 22.445 22.217 22.638 -1.5532 26 11 4 0 0 0 0.55219 1 4157 4157 0.12781 0 1 940700 + 723 22702 403 403 935 935 0.05986754831701546 AEEIPHPCGHD 11 Unmodified _AEEIPHPCGHD_ 0 0 0 ENST00000586275.1_1_19:10570260-10570353:+|nuORF;ENST00000592685.5_1_19:10570095-10570353:+|nuORF ENST00000586275.1_1_19:10570260-10570353:+|nuORF ENST00000586275.1_1_19:10570260-10570353:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2998046875 2 602.756212 1203.49787 -1.3724 -0.00082722 -0.97857 -0.00058984 -2.351 -0.0014171 602.7556041005367 16.468 0.13855 15.115 15.028 15.167 -1.3534 5 3 2 0 0 0 0.96175 1 2323 2323 2.9952 0.93549 1 323890 724 11546 404 404 936 936 -0.09573771170221335 AEEISTAIS 9 Unmodified _AEEISTAIS_ 0 0 0 ENSG00000101421|ENST00000217402|CHMP4B ENSG00000101421|ENST00000217402|CHMP4B ENSG00000101421|ENST00000217402|CHMP4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2393493652344 2 460.732197 919.449842 0.16031 7.3858E-05 -0.14902 -6.8657E-05 0.01129 5.2016E-06 460.73197136367145 64.699 0.62923 61.241 60.909 61.538 -3.4581 26 17 2 0 0 0 0.32967 1 12083 12083 14.987 12.104 1 1698300 725 2065 405 405 937 937 -0.013105218186183265 AEEITLHYA 9 Unmodified _AEEITLHYA_ 0 0 0 nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F;ENSG00000049769|ENST00000055335|PPP1R3F nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6915283203125 2 523.761289 1045.50803 -0.024235 -1.2693E-05 0.076519 4.0078E-05 0.052285 2.7385E-05 523.7613379623145 92.312 1.0462 92.312 91.805 92.851 0 111 29 5 0 0 0 0.057505 1 18068 18068 68.081 3.8444 1 61306000 726 1240 406 406 938 938 -0.01290840173351171 AEEKAHAF 8 Unmodified _AEEKAHAF_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 451.5234680175781 2 451.721967 901.429381 -0.0025595 -1.1562E-06 0.33092 0.00014948 0.32836 0.00014833 451.72197786534576 19.345 0.43179 17.948 17.741 18.173 -1.3966 22 11 3 0 0 0 8448 1 3175 3175 57.885 34.095 1 1969200 727 6567 407 407 939 939 -0.025276476877706955 AEEKAHAF 8 Unmodified _AEEKAHAF_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 451.721967 901.429381 0.18307 8.2695E-05 0.46205 0.00020872 0.64512 0.00029141 451.72191829644555 18.071 0.35224 18.071 17.878 18.23 0 0.11732 -0.00015628 NaN 57.885 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 4776000 728 6567 407 407 -0.025276476877706955 AEEKAHAF 8 Unmodified _AEEKAHAF_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 451.721967 901.429381 -0.37189 -0.00016799 0.78428 0.00035428 0.41239 0.00018629 451.7221301935967 19.286 0.35505 17.961 17.79 18.145 -1.3251 0.0076046 0.00013484 NaN 57.885 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1179000 729 6567 407 407 -0.025276476877706955 AEEKAHAF 8 Unmodified _AEEKAHAF_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 451.721967 901.429381 -1.0645 -0.00048084 1.0949 0.00049458 0.030398 1.3731E-05 451.722446442651 19.469 0.27662 17.834 17.704 17.981 -1.6351 -0.11943 0.00041543 NaN 57.885 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 553580 730 6567 407 407 -0.025276476877706955 AEEKALAMG 9 Unmodified _AEEKALAMG_ 0 0 0 ENST00000434972.1_1_X:5223988-5224234:-|nuORF;nc|ENSG00000138029|P55084-2|HADHB;ENSG00000138029|ENST00000317799|HADHB ENST00000434972.1_1_X:5223988-5224234:-|nuORF ENST00000434972.1_1_X:5223988-5224234:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.231201171875 2 460.23131 918.448068 0.2953 0.00013591 -0.29967 -0.00013792 -0.0043659 -2.0093E-06 460.2311551978635 37.471 0.52305 37.471 37.16 37.683 0 19 14 2 0 0 0 0.25183 2 6938 6887;6938 34.402 13.948 1 754080 731 4138 408 408 940;941 941 -0.014418541082136471 AEEKALAMG 9 Unmodified _AEEKALAMG_ 0 0 0 ENST00000434972.1_1_X:5223988-5224234:-|nuORF;nc|ENSG00000138029|P55084-2|HADHB;ENSG00000138029|ENST00000317799|HADHB ENST00000434972.1_1_X:5223988-5224234:-|nuORF ENST00000434972.1_1_X:5223988-5224234:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2463073730469 2 460.23131 918.448068 0.12294 5.6581E-05 -0.21227 -9.7693E-05 -0.089329 -4.1112E-05 460.2311860602786 39.741 0.42075 37.336 37.137 37.558 -2.4049 14 11 2 0 0 0 0.60061 1 7121 7121 13.042 2.9685 1 505560 732 4138 408 408 942 942 -0.014418541082136471 AEEKAWDA 8 Unmodified _AEEKAWDA_ 0 0 0 ENSG00000197599|ENST00000389176|CCDC154 ENSG00000197599|ENST00000389176|CCDC154 ENSG00000197599|ENST00000389176|CCDC154 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.231201171875 2 460.211432 918.408311 -0.10526 -4.8444E-05 -1.3418 -0.00061751 -1.4471 -0.00066596 460.2104289664026 45.923 1.2143 43.056 42.362 43.577 -2.8665 63 34 3 0 0 0 0.31581 1 8362 8362 61.357 6.5839 1 1755000 733 7383 409 409 943 943 -0.05415657787295913 AEEKAWDA 8 Unmodified _AEEKAWDA_ 0 0 0 ENSG00000197599|ENST00000389176|CCDC154 ENSG00000197599|ENST00000389176|CCDC154 ENSG00000197599|ENST00000389176|CCDC154 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.211432 918.408311 0.45684 0.00021024 -2.0585 -0.00094734 -1.6017 -0.0007371 460.21019855647376 43.004 0.93998 43.004 42.422 43.362 0 -0.043296 -0.00026975 NaN 61.357 55 26 3 NaN NaN NaN NaN 0 NaN NaN 0 1532400 734 7383 409 409 -0.05415657787295913 AEEKAWDA 8 Unmodified _AEEKAWDA_ 0 0 0 ENSG00000197599|ENST00000389176|CCDC154 ENSG00000197599|ENST00000389176|CCDC154 ENSG00000197599|ENST00000389176|CCDC154 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.211432 918.408311 -0.10332 -4.7548E-05 -1.7698 -0.00081446 -1.8731 -0.00086201 460.2103162610163 45.897 1.0828 43.056 42.475 43.558 -2.8409 0.0087951 -3.9813E-06 NaN 61.357 76 30 3 NaN NaN NaN NaN 0 NaN NaN 0 2398700 735 7383 409 409 -0.05415657787295913 AEEKAWDA 8 Unmodified _AEEKAWDA_ 0 0 0 ENSG00000197599|ENST00000389176|CCDC154 ENSG00000197599|ENST00000389176|CCDC154 ENSG00000197599|ENST00000389176|CCDC154 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.211432 918.408311 -0.062291 -2.8667E-05 -1.8409 -0.00084721 -1.9032 -0.00087588 460.2103896939757 45.939 1.1038 43.074 42.553 43.657 -2.8653 0.026103 -6.9481E-05 NaN 61.357 65 31 3 NaN NaN NaN NaN 0 NaN NaN 0 3270900 736 7383 409 409 -0.05415657787295913 AEEKDWKTA 9 Unmodified _AEEKDWKTA_ 0 0 0 ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11 ENSG00000108671|ENST00000261712|PSMD11 ENSG00000108671|ENST00000261712|PSMD11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2101135253906 3 359.845223 1076.51384 -0.27731 -9.9788E-05 -0.21315 -7.6702E-05 -0.49046 -0.00017649 359.84514708635317 19.616 1.3218 19.616 19.31 20.632 0 105 37 5 0 0 0 0.87265 1 3260 3260 6.1918 0 1 96955000 737 2492 410 410 944 944 -0.021357416616638147 AEEKDWKTA 9 Unmodified _AEEKDWKTA_ 0 0 0 ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11 ENSG00000108671|ENST00000261712|PSMD11 ENSG00000108671|ENST00000261712|PSMD11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2113037109375 3 359.845223 1076.51384 -0.20929 -7.5313E-05 -0.18861 -6.787E-05 -0.3979 -0.00014318 359.8451271602172 20.945 1.4941 19.56 19.271 20.765 -1.3847 105 42 5 0 0 0 0.52856 1 3316 3316 17.863 5.0072 1 73469000 738 2492 410 410 945 945 -0.021357416616638147 AEEKDWKTA 9 Unmodified _AEEKDWKTA_ 0 0 0 ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11 ENSG00000108671|ENST00000261712|PSMD11 ENSG00000108671|ENST00000261712|PSMD11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2127990722656 3 359.845223 1076.51384 -1.4321 -0.00051533 0.87361 0.00031436 -0.55847 -0.00020096 359.8454915082005 21.2 1.5283 19.479 19.218 20.746 -1.7211 113 43 5 0 0 0 0.14842 3 3294 3283;3294;3347 44.392 21.617 1 48771000 739 2492 410 410 946;947;948 947 -0.021357416616638147 AEEKFKEIA 9 Unmodified _AEEKFKEIA_ 0 0 0 DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant;DNAJB5|p.P170Qfs*21|1|0.64|ENSG00000137094|chr9:34996557-34996557|C/-|frameshift_variant;DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5 DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2864990234375 2 532.784764 1063.55498 0.20325 0.00010829 0.39191 0.00020881 0.59517 0.0003171 532.7846462276576 38.684 0.70395 38.684 38.32 39.024 0 41 19 4 0 0 0 0.11261 1 7165 7165 51.488 23.859 1 2132700 740 871 411 411 949 949 0.025740193778119647 AEEKFKEIA 9 Unmodified _AEEKFKEIA_ 0 0 0 DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant;DNAJB5|p.P170Qfs*21|1|0.64|ENSG00000137094|chr9:34996557-34996557|C/-|frameshift_variant;DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5 DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2864379882812 2 532.784764 1063.55498 -0.13096 -6.9771E-05 0.63691 0.00033934 0.50595 0.00026956 532.7849701266742 41.188 0.48838 38.554 38.257 38.745 -2.6348 20 13 2 0 0 0 0.11282 1 7700 7700 51.415 22.334 1 1447000 741 871 411 411 950 950 0.025740193778119647 AEEKFKEIA 9 Unmodified _AEEKFKEIA_ 0 0 0 DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant;DNAJB5|p.P170Qfs*21|1|0.64|ENSG00000137094|chr9:34996557-34996557|C/-|frameshift_variant;DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5 DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.286865234375 2 532.784764 1063.55498 0.12041 6.4154E-05 0.75092 0.00040008 0.87133 0.00046423 532.7849024392111 41.005 0.45748 38.516 38.286 38.743 -2.4896 20 12 2 0 0 0 0.27986 1 7355 7355 32.786 8.7651 1 1581400 742 871 411 411 951 951 0.025740193778119647 AEEKNNWMA 9 Unmodified _AEEKNNWMA_ 0 0 0 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1;SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.77490234375 2 546.742573 1091.47059 0.63809 0.00034887 -0.88683 -0.00048487 -0.24875 -0.000136 546.7420762020843 48.358 0.87801 48.358 47.858 48.736 0 58 24 3 0 0 0 0.27986 1 9089 9089 32.786 4.2988 1 15538000 743 2892 412 412 952 952 -0.07148254710591573 AEEKNNWMA 9 Unmodified _AEEKNNWMA_ 0 0 0 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1;SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7933959960938 2 546.742573 1091.47059 0.066241 3.6217E-05 -0.18682 -0.00010214 -0.12057 -6.5923E-05 546.7424274886441 51.298 0.87606 48.253 47.735 48.611 -3.0453 73 24 4 0 0 0 0.34411 1 9432 9432 29.082 6.3453 1 21243000 744 2892 412 412 953 953 -0.07148254710591573 AEEKNNWMA 9 Unmodified _AEEKNNWMA_ 0 0 0 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1;SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.742573 1091.47059 0.63809 0.00034887 -0.88683 -0.00048487 -0.24875 -0.000136 546.7420762020843 48.358 0.87801 48.358 47.858 48.736 0 0.051697 -0.00050964 NaN 32.786 58 24 3 NaN NaN NaN NaN 0 NaN NaN 0 15538000 745 2892 412 412 -0.07148254710591573 AEEKNNWMA 9 Unmodified _AEEKNNWMA_ 0 0 0 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1;SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.742573 1091.47059 0.015791 8.6337E-06 -0.32088 -0.00017544 -0.30509 -0.00016681 546.7424392184864 51.273 0.80555 48.221 47.748 48.554 -3.0517 -0.085358 0.00010922 NaN 32.786 71 22 4 NaN NaN NaN NaN 0 NaN NaN 0 16957000 746 2892 412 412 -0.07148254710591573 AEEKNNWMAA 10 Oxidation (M) _AEEKNNWM(Oxidation (M))AA_ AEEKNNWM(1)AA AEEKNNWM(46)AA 0 0 1 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1;SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.247802734375 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 31.671 1 29.44 28.94 29.94 -2.2305 0 0 0 0.10139 1 5755 5755 45.74 32.125 1 747 2892 413 413 954 954 35 -0.07948887027441742 AEELAWSR 8 Unmodified _AEELAWSR_ 0 0 0 ENST00000240719.7_1_19:58038771-58038957:+|nuORF ENST00000240719.7_1_19:58038771-58038957:+|nuORF ENST00000240719.7_1_19:58038771-58038957:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25469970703125 2 481.240524 960.466495 0.052696 2.5359E-05 0.80521 0.0003875 0.8579 0.00041286 481.2408169113099 24.601 0.31108 23.067 22.884 23.195 -1.5342 13 8 2 0 0 0 0.52597 1 4000 4000 26.884 1.4843 1 814170 748 8186 414 414 955 955 -0.015319761420073519 AEELAWSR 8 Unmodified _AEELAWSR_ 0 0 0 ENST00000240719.7_1_19:58038771-58038957:+|nuORF ENST00000240719.7_1_19:58038771-58038957:+|nuORF ENST00000240719.7_1_19:58038771-58038957:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2404479980469 2 481.240524 960.466495 -0.27366 -0.0001317 1.5783 0.00075954 1.3046 0.00062785 481.24140725558385 24.85 0.30361 22.997 22.846 23.15 -1.8534 12 8 2 0 0 0 8448 1 4067 4067 6.2058 1.3088 1 648820 749 8186 414 414 956 956 -0.015319761420073519 AEELDKRTEYK 11 Unmodified _AEELDKRTEYK_ 0 0 0 ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.2466735839844 3 461.236779 1380.68851 -0.11385 -5.251E-05 0.39038 0.00018006 0.27653 0.00012755 461.23689491925523 82.725 0.66061 79.027 78.728 79.389 -3.6985 35 18 3 0 0 0 0.62806 1 15748 15748 0.11104 0.084836 1 1754700 750 7410 415 415 957 957 0.013392136928587206 AEELDKRTEYK 11 Unmodified _AEELDKRTEYK_ 0 0 0 ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 461.236779 1380.68851 0.63567 0.0002932 -0.36129 -0.00016664 0.27439 0.00012656 461.23652141092936 79.054 0.51965 79.054 78.784 79.304 0 0.012519 -0.00051135 NaN 0.11104 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1022800 751 7410 415 415 0.013392136928587206 AEELDKRTEYK 11 Unmodified _AEELDKRTEYK_ 0 0 0 ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 461.236779 1380.68851 -0.0853 -3.9343E-05 0.06208 2.8634E-05 -0.023219 -1.071E-05 461.23682200432955 82.569 0.56291 78.961 78.739 79.302 -3.6079 -0.080785 7.4465E-05 NaN 0.11104 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1992500 752 7410 415 415 0.013392136928587206 AEELDKRTEYK 11 Unmodified _AEELDKRTEYK_ 0 0 0 ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 461.236779 1380.68851 0.047508 2.1912E-05 -0.061451 -2.8344E-05 -0.013944 -6.4313E-06 461.2367753919213 82.999 0.48123 79.125 78.779 79.26 -3.8736 0.083457 -9.6467E-05 NaN 0.11104 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2087900 753 7410 415 415 0.013392136928587206 AEELDKRTEYK 11 Unmodified _AEELDKRTEYK_ 0 0 0 ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 461.236779 1380.68851 -0.11385 -5.251E-05 0.39038 0.00018006 0.27653 0.00012755 461.23689491925523 82.725 0.66061 79.027 78.728 79.389 -3.6985 -0.015192 0.00052873 NaN 0.11104 35 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1754700 754 7410 415 415 0.013392136928587206 AEELERLC 8 Unmodified _AEELERLC_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7883605957031 2 481.734217 961.453881 NaN NaN NaN NaN NaN NaN NaN 83.11 1 83.11 82.61 83.61 0 0 0 0 0.17841 1 16203 16203 32.305 5.4218 1 755 5857 416 416 958 958 -0.028387555965423417 AEELERLC 8 Unmodified _AEELERLC_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7669372558594 2 481.734217 961.453881 NaN NaN NaN NaN NaN NaN NaN 83.266 1 83.266 82.766 83.766 0 0 0 0 0.1328 1 16235 16235 39.957 7.6518 1 756 5857 416 416 959 959 -0.028387555965423417 AEELFTRSL 9 Unmodified _AEELFTRSL_ 0 0 0 AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant;AMPD2|p.P300Lfs*63|2|0.28|ENSG00000116337|chr1:109627188-109627188|C/-|frameshift_variant;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;ENSG00000116337|ENST00000528667|AMPD2 AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2838134765625 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 99.414 1 95.458 94.958 95.958 -3.9564 0 0 0 0.23508 1 19087 19087 11.64 0.81637 1 757 150 417 417 960 960 0.020531352350417365 AEELGHEA 8 Unmodified _AEELGHEA_ 0 0 0 RASSF7|p.R164W|1|0.15|ENSG00000099849|chr11:562444-562444|A/T|missense_variant;nc|ENSG00000099849|Q02833-3|RASSF7;nc|ENSG00000099849|Q02833-2|RASSF7;ENSG00000099849|ENST00000397583|RASSF7 RASSF7|p.R164W|1|0.15|ENSG00000099849|chr11:562444-562444|A/T|missense_variant RASSF7|p.R164W|1|0.15|ENSG00000099849|chr11:562444-562444|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 428.1407165527344 2 428.195782 854.377011 0.27553 0.00011798 0.11758 5.0349E-05 0.39311 0.00016833 428.19564937763516 21.213 0.28114 19.738 19.56 19.841 -1.4742 11 7 2 0 0 0 0.73936 1 3570 3570 8.5933 1.8701 1 356740 758 1904 418 418 961 961 -0.05600230821369223 AEELGLKY 8 Unmodified _AEELGLKY_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5226135253906 2 461.74765 921.480748 -0.57711 -0.00026648 0.54038 0.00024952 -0.036732 -1.6961E-05 461.7479080040947 108.71 0.86864 104.35 103.87 104.73 -4.3548 30 24 2 0 0 0 0.66265 1 21338 21338 18.135 2.2878 1 1007900 + 759 18819 419 419 962 962 0.01686676286283273 AEELGLKY 8 Unmodified _AEELGLKY_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.74765 921.480748 -0.57711 -0.00026648 0.54038 0.00024952 -0.036732 -1.6961E-05 461.7479080040947 108.71 0.86864 104.35 103.87 104.73 -4.3548 -0.041015 1.7574E-05 NaN 18.135 30 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1007900 + 760 18819 419 419 0.01686676286283273 AEELGLKY 8 Unmodified _AEELGLKY_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.74765 921.480748 -0.18955 -8.7525E-05 0.48183 0.00022248 0.29228 0.00013496 461.7479344207258 108.89 0.73283 104.44 104.05 104.78 -4.4518 0.041015 -3.6497E-05 NaN 18.135 27 20 2 NaN NaN NaN NaN 0 NaN NaN 0 692900 + 761 18819 419 419 0.01686676286283273 AEELHAFI 8 Unmodified _AEELHAFI_ 0 0 0 REV__nc|ENSG00000099337|Q9Y257-2|KCNK6 REV__nc|ENSG00000099337|Q9Y257-2|KCNK6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2410583496094 2 465.239993 928.465432 0.043233 2.0114E-05 1.343 0.00062481 1.3862 0.00064492 465.2414563559812 72.009 0.77524 72.009 71.49 72.266 0 38 21 3 0 0 0 8448 1 13929 13929 0.68139 0 1 1585100 + 762 14635 420 420 963 963 -0.0016619051090174253 AEELNVFHER 10 Unmodified _AEELNVFHER_ 0 0 0 ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA ENST00000477618.1_1_9:74817496-74842957:+|nuORF ENST00000477618.1_1_9:74817496-74842957:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.25286865234375 3 415.207043 1242.5993 0.01375 5.7091E-06 -0.017348 -7.2031E-06 -0.0035983 -1.494E-06 415.20699203713474 50.454 0.71096 47.409 47.024 47.735 -3.0453 61 20 4 0 0 0 0.71778 1 9299 9299 5.4027 1.8157 1 7631900 763 3060 421 421 964 964 -0.012295764760210659 AEELNVFHER 10 Unmodified _AEELNVFHER_ 0 0 0 ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA ENST00000477618.1_1_9:74817496-74842957:+|nuORF ENST00000477618.1_1_9:74817496-74842957:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 415.207043 1242.5993 0.40985 0.00017017 -0.38083 -0.00015812 0.029025 1.2051E-05 415.2068639022377 47.283 0.70051 47.283 46.98 47.681 0 -0.075924 -0.00048994 NaN 5.4027 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3464100 764 3060 421 421 -0.012295764760210659 AEELNVFHER 10 Unmodified _AEELNVFHER_ 0 0 0 ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA ENST00000477618.1_1_9:74817496-74842957:+|nuORF ENST00000477618.1_1_9:74817496-74842957:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 415.207043 1242.5993 -0.30289 -0.00012576 0.25563 0.00010614 -0.047257 -1.9622E-05 415.2071452534334 50.271 0.67106 47.39 47.079 47.75 -2.8811 0.031184 0.00030285 NaN 5.4027 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 8594700 765 3060 421 421 -0.012295764760210659 AEELNVFHER 10 Unmodified _AEELNVFHER_ 0 0 0 ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA ENST00000477618.1_1_9:74817496-74842957:+|nuORF ENST00000477618.1_1_9:74817496-74842957:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 415.207043 1242.5993 -0.43996 -0.00018267 0.42376 0.00017595 -0.016196 -6.7249E-06 415.20720296260464 50.36 0.71349 47.353 47.009 47.722 -3.0068 -0.0052956 0.00051228 NaN 5.4027 61 20 4 NaN NaN NaN NaN 0 NaN NaN 0 6285300 766 3060 421 421 -0.012295764760210659 AEELRRGY 8 Unmodified _AEELRRGY_ 0 0 0 ENSG00000178404|ENST00000322630|CEP295NL ENSG00000178404|ENST00000322630|CEP295NL ENSG00000178404|ENST00000322630|CEP295NL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.0054016113281 3 331.841924 992.503943 0.10228 3.3942E-05 0.014793 4.909E-06 0.11708 3.8851E-05 331.84190369371464 37.19 0.92715 34.842 34.311 35.238 -2.3479 52 26 3 0 0 0 1.0267 1 6587 6587 3.5965 2.4032 1 1055200 767 6577 422 422 965 965 0.007391151236220139 AEEMHWPVP 9 Unmodified _AEEMHWPVP_ 0 0 0 SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant;SH3BP2|p.V381Rfs*14|1|0.18|ENSG00000087266|chr4:2830040-2830041|-/C|frameshift_variant;ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-3|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2;nc|ENSG00000087266|P78314-2|SH3BP2;ENST00000511663.5_1_4:2811506-2826487:+|nuORF;ENST00000511237.5_1_4:2795936-2826487:+|nuORF;ENST00000511185.5_1_4:2814082-2826487:+|nuORF;SH3BP2|p.P238Rfs*40|1|0.37|ENSG00000087266|chr4:2829615-2829615|C/-|frameshift_variant;SH3BP2|p.R342Pfs*7|1|0.24|ENSG00000087266|chr4:2829924-2829925|-/C|frameshift_variant;SH3BP2|p.P368Qfs*21|1|0.28|ENSG00000087266|chr4:2830004-2830004|C/-|frameshift_variant SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.76904296875 2 548.250034 1094.48552 0.092709 5.0828E-05 0.092453 5.0687E-05 0.18516 0.00010151 548.250064594386 138.02 1.6851 133.09 131.7 133.39 -4.9216 80 47 2 0 0 0 0.42289 1 26404 26404 32.305 28.361 1 4371700 768 1712 423 423 966 966 -0.0579476284260636 AEEMHWPVP 9 Unmodified _AEEMHWPVP_ 0 0 0 SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant;SH3BP2|p.V381Rfs*14|1|0.18|ENSG00000087266|chr4:2830040-2830041|-/C|frameshift_variant;ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-3|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2;nc|ENSG00000087266|P78314-2|SH3BP2;ENST00000511663.5_1_4:2811506-2826487:+|nuORF;ENST00000511237.5_1_4:2795936-2826487:+|nuORF;ENST00000511185.5_1_4:2814082-2826487:+|nuORF;SH3BP2|p.P238Rfs*40|1|0.37|ENSG00000087266|chr4:2829615-2829615|C/-|frameshift_variant;SH3BP2|p.R342Pfs*7|1|0.24|ENSG00000087266|chr4:2829924-2829925|-/C|frameshift_variant;SH3BP2|p.P368Qfs*21|1|0.28|ENSG00000087266|chr4:2830004-2830004|C/-|frameshift_variant SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.770263671875 2 548.250034 1094.48552 0.31286 0.00017152 -0.3625 -0.00019874 -0.049639 -2.7215E-05 548.2498692817452 137.32 1.1985 132.48 132.11 133.31 -4.84 48 33 2 0 0 0 0.71527 1 26500 26500 19.257 11.347 1 2463400 769 1712 423 423 967 967 -0.0579476284260636 AEEMHWPVP 9 Unmodified _AEEMHWPVP_ 0 0 0 SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant;SH3BP2|p.V381Rfs*14|1|0.18|ENSG00000087266|chr4:2830040-2830041|-/C|frameshift_variant;ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-3|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2;nc|ENSG00000087266|P78314-2|SH3BP2;ENST00000511663.5_1_4:2811506-2826487:+|nuORF;ENST00000511237.5_1_4:2795936-2826487:+|nuORF;ENST00000511185.5_1_4:2814082-2826487:+|nuORF;SH3BP2|p.P238Rfs*40|1|0.37|ENSG00000087266|chr4:2829615-2829615|C/-|frameshift_variant;SH3BP2|p.R342Pfs*7|1|0.24|ENSG00000087266|chr4:2829924-2829925|-/C|frameshift_variant;SH3BP2|p.P368Qfs*21|1|0.28|ENSG00000087266|chr4:2830004-2830004|C/-|frameshift_variant SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 548.250034 1094.48552 0.20542 0.00011262 0.0097372 5.3384E-06 0.21516 0.00011796 548.2500119730609 137.45 1.2956 132.81 132.17 133.46 -4.6413 -0.14406 -4.8881E-05 NaN 25.399 51 36 2 NaN NaN NaN NaN 0 NaN NaN 0 4244800 770 1712 423 423 -0.0579476284260636 AEEMKQRKAAF 11 Unmodified _AEEMKQRKAAF_ 0 0 0 ENSG00000142634|ENST00000375980|EFHD2 ENSG00000142634|ENST00000375980|EFHD2 ENSG00000142634|ENST00000375980|EFHD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23028564453125 3 436.895812 1307.66561 0.026723 1.1675E-05 -0.28394 -0.00012405 -0.25721 -0.00011238 436.89574963818563 55.797 0.38755 52.607 52.424 52.811 -3.1895 19 10 3 0 0 0 0.79196 1 10306 10306 4.7159 1.6437 1 2215600 771 4436 424 424 968 968 0.02407916094398388 AEENKGLI 8 Unmodified _AEENKGLI_ 0 0 0 REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.228759765625 2 437.23745 872.460347 0.62308 0.00027243 -0.41507 -0.00018149 0.20801 9.0948E-05 437.23702642036676 28.524 0.79011 26.568 26.364 27.154 -1.9561 30 22 2 0 0 0 8448 1 5102 5102 6.2058 1.3088 1 520660 + 772 15201 425 425 969 969 0.019015056264720442 AEENKMNS 8 Unmodified _AEENKMNS_ 0 0 0 ENSG00000137962|ENST00000260526|ARHGAP29;ARHGAP29|p.K840I|1|0.34|ENSG00000137962|chr1:94178129-94178129|T/A|missense_variant;ENST00000482481.1_1_1:94643162-94655618:-|nuORF ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5271301269531 2 461.700374 921.386196 NaN NaN NaN NaN NaN NaN NaN 43.08 1 43.08 42.58 43.58 0 0 0 0 0.23025 1 8067 8067 0.62683 0.49901 1 773 4132 426 426 970 970 -0.07764205527359991 AEENNCDY 8 Unmodified _AEENNCDY_ 0 0 0 ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant;ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant;ENSG00000196693|ENST00000359467|ZNF33B;nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77423095703125 2 479.166364 956.318176 -0.13395 -6.4182E-05 -0.74909 -0.00035894 -0.88304 -0.00042312 479.16840443959995 45.782 0.83371 42.915 42.432 43.266 -2.8665 90 23 6 0 0 0 8448 1 8288 8288 0.0082765 0 1 3311000 774 26614 427 427 971 971 -0.16173075178016916 AEENTLYQI 9 Unmodified _AEENTLYQI_ 0 0 0 REV__RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant REV__RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.265869140625 2 540.764029 1079.5135 0.40487 0.00021894 -1.3681 -0.00073982 -0.96323 -0.00052088 540.7629306005161 67.62 0.24184 64.293 64.104 64.346 -3.3268 10 6 2 0 0 0 0.60805 1 12750 12750 12.532 0 1 850790 + 775 14560 428 428 972 972 -0.023071613815318415 AEEPAMPLV 9 Unmodified _AEEPAMPLV_ 0 0 0 REV__nc|ENSG00000204540|Q9UIG5-2|PSORS1C1 REV__nc|ENSG00000204540|Q9UIG5-2|PSORS1C1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7430114746094 2 478.741511 955.468469 NaN NaN NaN NaN NaN NaN NaN 19.906 1 18.509 18.009 19.009 -1.3966 0 0 0 0.23508 1 3302 3302 8.5933 0 1 + 776 19544 429 429 973 973 -0.01104683448409105 AEEPASVTP 9 Unmodified _AEEPASVTP_ 0 0 0 ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3 ENST00000470521.1_1_1:222791452-222819114:+|nuORF ENST00000470521.1_1_1:222791452-222819114:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 451.7388916015625 2 450.71909 899.423627 -0.097497 -4.3944E-05 0.23797 0.00010726 0.14047 6.3314E-05 450.71913433680555 43.032 1.6593 40.381 39.641 41.3 -2.651 142 46 4 0 0 0 0.069179 1 7802 7802 42.232 35.745 1 56159000 777 5006 430 430 974 974 -0.030107909900834784 AEEPASVTP 9 Unmodified _AEEPASVTP_ 0 0 0 ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3 ENST00000470521.1_1_1:222791452-222819114:+|nuORF ENST00000470521.1_1_1:222791452-222819114:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 901.4339599609375 1 900.430903 899.423627 0.12521 0.00011274 0.06317 5.688E-05 0.18838 0.00016962 900.43088719699 43.051 1.2556 40.445 39.863 41.118 -2.606 83 35 3 0 0 0 0.15214 1 7681 7681 43.858 16.975 1 9812300 778 5006 430 430 975 975 -0.030107909900834784 AEEPASVTP 9 Unmodified _AEEPASVTP_ 0 0 0 ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3 ENST00000470521.1_1_1:222791452-222819114:+|nuORF ENST00000470521.1_1_1:222791452-222819114:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 900.430903 899.423627 0.67715 0.00060973 -0.4337 -0.00039052 0.24345 0.00021921 900.4304325744164 40.281 1.0969 40.281 39.752 40.849 0 -0.097691 -0.00029733 NaN 43.858 64 30 3 NaN NaN NaN NaN 0 NaN NaN 0 6699900 779 5006 430 430 -0.030107909900834784 AEEPASVTP 9 Unmodified _AEEPASVTP_ 0 0 0 ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3 ENST00000470521.1_1_1:222791452-222819114:+|nuORF ENST00000470521.1_1_1:222791452-222819114:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 450.71909 899.423627 0.39396 0.00017756 -0.2232 -0.0001006 0.17076 7.6965E-05 450.71890659129764 40.299 1.4848 40.299 39.609 41.094 0 -0.068315 -0.00032794 NaN 42.232 113 41 4 NaN NaN NaN NaN 0 NaN NaN 0 26549000 780 5006 430 430 -0.030107909900834784 AEEPASVTP 9 Unmodified _AEEPASVTP_ 0 0 0 ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3 ENST00000470521.1_1_1:222791452-222819114:+|nuORF ENST00000470521.1_1_1:222791452-222819114:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 900.430903 899.423627 0.12102 0.00010897 -0.053437 -4.8116E-05 0.067581 6.0852E-05 900.4307785851091 43.105 1.1073 40.386 39.84 40.947 -2.7191 0.0064056 4.5073E-05 NaN 43.858 65 30 3 NaN NaN NaN NaN 0 NaN NaN 0 12783000 781 5006 430 430 -0.030107909900834784 AEEPASVTP 9 Unmodified _AEEPASVTP_ 0 0 0 ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3 ENST00000470521.1_1_1:222791452-222819114:+|nuORF ENST00000470521.1_1_1:222791452-222819114:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 900.430903 899.423627 0.18476 0.00016636 -0.059568 -5.3637E-05 0.12519 0.00011272 900.4307661129322 43.056 1.2443 40.405 39.845 41.089 -2.651 0.02589 3.9553E-05 NaN 43.858 71 34 3 NaN NaN NaN NaN 0 NaN NaN 0 12191000 782 5006 430 430 -0.030107909900834784 AEEPASVTP 9 Unmodified _AEEPASVTP_ 0 0 0 ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3 ENST00000470521.1_1_1:222791452-222819114:+|nuORF ENST00000470521.1_1_1:222791452-222819114:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 450.71909 899.423627 -0.087957 -3.9644E-05 0.16187 7.2958E-05 0.073913 3.3314E-05 450.71911733612075 43.046 1.6105 40.44 39.75 41.361 -2.606 0.072572 1.9178E-05 NaN 42.232 124 45 3 NaN NaN NaN NaN 0 NaN NaN 0 41948000 783 5006 430 430 -0.030107909900834784 AEEPDMEEDD 10 Unmodified _AEEPDMEEDD_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.248291015625 2 590.203341 1178.39213 NaN NaN NaN NaN NaN NaN NaN 28.765 1 28.765 28.265 29.265 0 0 0 0 0.22576 1 5119 5119 14.838 6.9281 1 784 7003 431 431 976 976 -0.18993196597011774 AEEPEKPT 8 Unmodified _AEEPEKPT_ 0 0 0 nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3;nc|ENSG00000083067|Q9HCF6-10|TRPM3;TRPM3|p.S1466Ffs*8|1|0.04|ENSG00000083067|chr9:70536682-70536683|-/CGTTCCAAAA|frameshift_variant nc|ENSG00000083067|Q9HCF6-8|TRPM3 nc|ENSG00000083067|Q9HCF6-8|TRPM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 452.2053527832031 2 450.71909 899.423627 -0.21688 -9.7754E-05 0.37847 0.00017058 0.16158 7.2829E-05 450.7191900583728 43.069 1.4959 40.349 39.659 41.155 -2.7191 128 41 4 0 0 0 8448 1 8086 8086 8.966 0 1 68759000 785 1646 432 432 977 977 -0.030107909900834784 AEEPGATAAV 10 Unmodified _AEEPGATAAV_ 0 0 0 REV__ENSG00000125827|ENST00000246024|TMX4 REV__ENSG00000125827|ENST00000246024|TMX4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2243957519531 2 458.224539 914.434526 -0.028417 -1.3022E-05 -0.67887 -0.00031107 -0.70729 -0.0003241 458.22416968700986 49.085 1.4356 46.086 45.468 46.904 -2.999 100 40 5 0 0 0 0.48672 1 9035 9035 25.399 0 1 40911000 + 786 15834 433 433 978 978 -0.026113886158213973 AEEPGMLSLP 10 Unmodified _AEEPGMLSLP_ 0 0 0 REV__ENST00000477162.1_1_6:33288364-33289602:-|nuORF REV__ENST00000477162.1_1_6:33288364-33289602:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2581787109375 2 522.257525 1042.5005 0.54176 0.00028294 0.96206 0.00050245 1.5038 0.00078538 522.759407421578 103.82 0.42467 103.82 103.58 104 0 20 11 3 0 0 0 0.51199 2 20428 20428;20438 24.021 1.2843 1 1996900 + 787 20249 434 434 979;980 979 -0.019053157652479058 AEEPGTFAV 9 Unmodified _AEEPGTFAV_ 0 0 0 ENSG00000188419|ENST00000357749|CHM ENSG00000188419|ENST00000357749|CHM ENSG00000188419|ENST00000357749|CHM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24505615234375 2 460.721633 919.428712 NaN NaN NaN NaN NaN NaN NaN 94.694 1 90.644 90.144 91.144 -4.0496 0 0 0 0.04992 1 18556 18556 52.268 10.174 1 788 7169 435 435 981 981 -0.03422487127465956 AEEPLGLPP 9 Unmodified _AEEPLGLPP_ 0 0 0 REV__ENST00000218104.5_1_X:152990328-152990616:+|nuORF REV__ENST00000218104.5_1_X:152990328-152990616:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.54071044921875 2 461.74765 921.480748 NaN NaN NaN NaN NaN NaN NaN 80.63 1 77.073 76.573 77.573 -3.557 0 0 0 0.20155 1 15746 15746 23.148 6.2061 1 + 789 20024 436 436 982 982 0.01686676286283273 AEEPPAHAP 9 Unmodified _AEEPPAHAP_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24578857421875 2 459.719424 917.424296 0.2557 0.00011755 -0.036767 -1.6902E-05 0.21893 0.00010065 459.71940742499095 23.433 2.4683 23.433 22.788 25.256 0 232 71 5 0 0 0 4.3823E-06 1 3954 3954 131.3 56.901 1 106090000 790 10773 437 437 983 983 -0.03771951550390895 AEEPPAHAP 9 Unmodified _AEEPPAHAP_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2457580566406 2 459.719424 917.424296 1.0203 0.00046903 -0.73518 -0.00033798 0.28507 0.00013105 459.7190947798906 25.003 2.617 23.355 22.789 25.406 -1.6482 224 75 4 0 0 0 0.13081 1 4612 4612 46.921 20.58 1 77807000 791 10773 437 437 984 984 -0.03771951550390895 AEEPPAHAP 9 Unmodified _AEEPPAHAP_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2302551269531 2 459.719424 917.424296 0.0072823 3.3478E-06 0.31852 0.00014643 0.32581 0.00014978 459.7195747710796 24.956 2.4611 23.422 22.817 25.279 -1.5342 217 70 4 0 0 0 0.042687 3 4271 4271;4299;4348 74.396 33.948 1 88409000 792 10773 437 437 985;986;987 985 -0.03771951550390895 AEEPPAHAP 9 Unmodified _AEEPPAHAP_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2303466796875 2 459.719424 917.424296 -0.14388 -6.6147E-05 0.37778 0.00017367 0.23389 0.00010753 459.7195996693131 25.16 2.5505 23.307 22.744 25.294 -1.8534 214 73 4 0 0 0 0.011288 4 4271 4271;4321;4354;4372 101.72 38.159 1 76930000 793 10773 437 437 988;989;990;991 988 -0.03771951550390895 AEEPPGPGP 9 Unmodified _AEEPPGPGP_ 0 0 0 ENST00000370790.5_1_X:133930872-133931067:-|nuORF ENST00000370790.5_1_X:133930872-133931067:-|nuORF ENST00000370790.5_1_X:133930872-133931067:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2478942871094 2 425.7007 849.386848 0.14126 6.0135E-05 0.34171 0.00014546 0.48297 0.0002056 425.70082281474674 29.394 1.1786 29.394 28.67 29.849 0 54 33 2 0 0 0 0.72864 1 5165 5165 23.148 2.6948 1 1614800 794 9146 438 438 992 992 -0.04387042815994846 AEEPPGPGP 9 Unmodified _AEEPPGPGP_ 0 0 0 ENST00000370790.5_1_X:133930872-133931067:-|nuORF ENST00000370790.5_1_X:133930872-133931067:-|nuORF ENST00000370790.5_1_X:133930872-133931067:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2514343261719 2 425.7007 849.386848 0.25152 0.00010707 0.13299 5.6613E-05 0.38451 0.00016369 425.7007927656629 31.96 1.6573 29.933 28.915 30.572 -2.0264 74 46 2 0 0 0 0.49001 1 5347 5347 28.487 0 1 982690 795 9146 438 438 993 993 -0.04387042815994846 AEEPRQAE 8 Unmodified _AEEPRQAE_ 0 0 0 REV__ENSG00000163661|ENST00000295927|PTX3 REV__ENSG00000163661|ENST00000295927|PTX3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24267578125 2 465.219788 928.425024 NaN NaN NaN NaN NaN NaN NaN 46.248 1 43.407 42.907 43.907 -2.8409 0 0 0 0.23107 1 8727 8727 2.643 1.188 1 + 796 17597 439 439 994 994 -0.0420515690133243 AEEPSPQAA 9 Unmodified _AEEPSPQAA_ 0 0 0 ENSG00000120833|ENST00000551556|SOCS2 ENSG00000120833|ENST00000551556|SOCS2 ENSG00000120833|ENST00000551556|SOCS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 450.11273193359375 2 450.208889 898.403226 0.22128 9.9622E-05 -0.030198 -1.3595E-05 0.19108 8.6026E-05 450.20881330491693 21.058 0.75918 21.058 20.668 21.427 0 48 21 3 0 0 0 0.67531 1 3461 3461 7.9102 2.6795 1 1503300 797 3158 440 440 995 995 -0.050039616499134354 AEEPSPQAA 9 Unmodified _AEEPSPQAA_ 0 0 0 ENSG00000120833|ENST00000551556|SOCS2 ENSG00000120833|ENST00000551556|SOCS2 ENSG00000120833|ENST00000551556|SOCS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 450.208889 898.403226 0.52776 0.0002376 -0.36662 -0.00016506 0.16114 7.2544E-05 450.20859712577095 22.467 1.0819 20.993 20.266 21.348 -1.4742 0.020935 -0.00035429 NaN 7.9102 62 30 4 NaN NaN NaN NaN 0 NaN NaN 0 1552700 798 3158 440 440 -0.050039616499134354 AEEPSPQAA 9 Unmodified _AEEPSPQAA_ 0 0 0 ENSG00000120833|ENST00000551556|SOCS2 ENSG00000120833|ENST00000551556|SOCS2 ENSG00000120833|ENST00000551556|SOCS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 450.208889 898.403226 -0.6073 -0.00027341 0.40607 0.00018282 -0.20123 -9.0598E-05 450.20900356867384 22.641 0.65816 20.852 20.466 21.124 -1.7886 -0.11969 0.00034146 NaN 7.9102 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 621690 799 3158 440 440 -0.050039616499134354 AEEPVFAAA 9 Unmodified _AEEPVFAAA_ 0 0 0 ENST00000367833.6_1_1:168148199-168148316:+|nuORF ENST00000367833.6_1_1:168148199-168148316:+|nuORF ENST00000367833.6_1_1:168148199-168148316:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7532043457031 2 452.724175 903.433798 -0.14068 -6.3687E-05 0.31966 0.00014472 0.17898 8.103E-05 452.7242692986218 91.756 1.0326 87.831 87.306 88.338 -3.9251 80 29 4 0 0 0 0.25702 1 17983 17983 34.102 1.797 1 15118000 800 9082 441 441 996 996 -0.02178183264868494 AEEPVFAAA 9 Unmodified _AEEPVFAAA_ 0 0 0 ENST00000367833.6_1_1:168148199-168148316:+|nuORF ENST00000367833.6_1_1:168148199-168148316:+|nuORF ENST00000367833.6_1_1:168148199-168148316:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 452.724175 903.433798 0.15534 7.0327E-05 0.073191 3.3135E-05 0.22853 0.00010346 452.7241617875834 87.792 1.0004 87.792 87.327 88.327 0 -0.075988 -4.2299E-05 NaN 34.102 67 28 3 NaN NaN NaN NaN 0 NaN NaN 0 18892000 801 9082 441 441 -0.02178183264868494 AEEPVFAAA 9 Unmodified _AEEPVFAAA_ 0 0 0 ENST00000367833.6_1_1:168148199-168148316:+|nuORF ENST00000367833.6_1_1:168148199-168148316:+|nuORF ENST00000367833.6_1_1:168148199-168148316:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 452.724175 903.433798 0.23796 0.00010773 0.0097385 4.4088E-06 0.2477 0.00011214 452.7241259974157 92.003 1.0419 87.909 87.358 88.4 -4.0946 0.040679 -9.9752E-05 NaN 34.102 69 29 3 NaN NaN NaN NaN 0 NaN NaN 0 11507000 802 9082 441 441 -0.02178183264868494 AEEPVFAAA 9 Unmodified _AEEPVFAAA_ 0 0 0 ENST00000367833.6_1_1:168148199-168148316:+|nuORF ENST00000367833.6_1_1:168148199-168148316:+|nuORF ENST00000367833.6_1_1:168148199-168148316:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 452.724175 903.433798 0.068531 3.1026E-05 0.12972 5.8727E-05 0.19825 8.9752E-05 452.72419255910927 91.748 1.0354 87.94 87.374 88.409 -3.8083 0.07189 8.8836E-06 NaN 34.102 68 29 3 NaN NaN NaN NaN 0 NaN NaN 0 13067000 803 9082 441 441 -0.02178183264868494 AEEQLRIVE 9 Unmodified _AEEQLRIVE_ 0 0 0 ENSG00000134884|ENST00000400198|ARGLU1 ENSG00000134884|ENST00000400198|ARGLU1 ENSG00000134884|ENST00000400198|ARGLU1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7921752929688 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 102.18 1 97.992 97.492 98.492 -4.1861 0 0 0 0.081239 1 20079 20079 41.84 9.5341 1 804 3880 442 442 997 997 0.032325202637593975 AEEQNALNQY 10 Unmodified _AEEQNALNQY_ 0 0 0 REV__tr|U7T8G8|U7T8G8_FUSNUAdhesionproteinFadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00050PE=4SV=1 REV__tr|U7T8G8|U7T8G8_FUSNUAdhesionproteinFadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00050PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2675170898438 2 590.267467 1178.52038 NaN NaN NaN NaN NaN NaN NaN 30.276 1 28.159 27.659 28.659 -2.1167 0 0 0 0.22588 1 5462 5462 6.7232 1.9672 1 + 805 25469 443 443 998 998 -0.06173848500952772 AEEQNISFK 9 Unmodified _AEEQNISFK_ 0 0 0 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2643432617188 2 533.264196 1064.51384 0.18677 9.9599E-05 0.55458 0.00029574 0.74135 0.00039534 533.2644481488175 19.374 0.28862 17.978 17.813 18.102 -1.3966 16 7 3 0 0 0 0.13932 1 3193 3193 45.7 3.7441 1 1807700 + 806 25229 444 444 999 999 -0.015837416616705013 AEEQNISFK 9 Unmodified _AEEQNISFK_ 0 0 0 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2634887695312 2 533.264196 1064.51384 0.051342 2.7379E-05 0.5031 0.00026829 0.55445 0.00029567 533.2643489499994 19.29 0.31931 17.965 17.755 18.074 -1.3251 17 8 3 0 0 0 0.30618 1 2918 2918 31.268 0 1 1747800 + 807 25229 444 444 1000 1000 -0.015837416616705013 AEEQNISFK 9 Unmodified _AEEQNISFK_ 0 0 0 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.264196 1064.51384 0.044133 2.3535E-05 0.35059 0.00018696 0.39472 0.00021049 533.2642558993098 18.041 0.32116 18.041 17.84 18.161 0 0.071074 -0.00033052 NaN 45.7 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 3303700 + 808 25229 444 444 -0.015837416616705013 AEEQNISFK 9 Unmodified _AEEQNISFK_ 0 0 0 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 533.264196 1064.51384 0.051342 2.7379E-05 0.5031 0.00026829 0.55445 0.00029567 533.2643489499994 19.29 0.31931 17.965 17.755 18.074 -1.3251 -0.0055334 -0.00016787 NaN 45.7 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1747800 + 809 25229 444 444 -0.015837416616705013 AEEQPSRL 8 Unmodified _AEEQPSRL_ 0 0 0 REV__nc|ENSG00000116584|Q92974-3|ARHGEF2 REV__nc|ENSG00000116584|Q92974-3|ARHGEF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2375183105469 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 25.109 1 23.461 22.961 23.961 -1.6482 0 0 0 0.20895 1 4397 4397 18.146 3.3081 1 + 810 15486 445 445 1001 1001 -0.005682800046201919 AEEQVKVAS 9 Unmodified _AEEQVKVAS_ 0 0 0 tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1 tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1 tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2550964355469 2 480.753464 959.492375 0.01938 9.3172E-06 0.083293 4.0043E-05 0.10267 4.9361E-05 480.7535713988848 29.301 0.45148 29.301 29.09 29.541 0 17 12 2 0 0 0 0.34411 1 5214 5214 29.082 5.9332 1 904500 811 26039 446 446 1002 1002 0.011008733096218748 AEEQVLVQ 8 Unmodified _AEEQVLVQ_ 0 0 0 REV__ENSG00000283632|ENST00000413988|EXOC3L2 REV__ENSG00000283632|ENST00000413988|EXOC3L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2393798828125 2 458.242732 914.470912 -0.12855 -5.8908E-05 -0.052274 -2.3954E-05 -0.18083 -8.2863E-05 458.24256223255327 46.483 0.66446 43.642 43.241 43.906 -2.8409 29 18 2 0 0 0 0.66265 2 8713 8713;8747 18.135 4.6271 1 1519700 + 812 19960 447 447 1003;1004 1003 0.010254882809022092 AEERQENLP 9 Unmodified _AEERQENLP_ 0 0 0 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7948608398438 2 543.264727 1084.5149 0.35711 0.000194 0.25756 0.00013992 0.61466 0.00033392 543.2647660434632 31.239 1.3521 31.239 30.626 31.978 0 75 38 3 0 0 0 0.46882 1 5714 5714 21.537 7.6309 1 2389400 813 4738 448 448 1005 1005 -0.0239752729276006 AEERQENLP 9 Unmodified _AEERQENLP_ 0 0 0 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7791137695312 2 543.264727 1084.5149 0.22088 0.00011999 0.22514 0.00012231 0.44602 0.00024231 543.2647602531777 33.401 1.3895 31.083 30.559 31.949 -2.3175 92 39 3 0 0 0 0.19171 2 6043 6043;6059 38.176 17.722 1 2125600 814 4738 448 448 1006;1007 1006 -0.0239752729276006 AEERQENLP 9 Unmodified _AEERQENLP_ 0 0 0 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.778564453125 2 543.264727 1084.5149 0.49303 0.00026784 -0.0083363 -4.5288E-06 0.48469 0.00026332 543.2646279221289 33.357 1.4952 31.142 30.56 32.055 -2.2158 90 42 3 0 0 0 0.19171 1 5757 5757 38.176 12.776 1 2543900 815 4738 448 448 1008 1008 -0.0239752729276006 AEERQENLP 9 Unmodified _AEERQENLP_ 0 0 0 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.264727 1084.5149 0.24372 0.0001324 0.22501 0.00012224 0.46873 0.00025464 543.2647471275521 33.313 1.4203 31.167 30.556 31.976 -2.1468 0.00886 6.7597E-05 NaN 38.176 98 40 3 NaN NaN NaN NaN 0 NaN NaN 0 2664800 816 4738 448 448 -0.0239752729276006 AEERSPGLG 9 Unmodified _AEERSPGLG_ 0 0 0 ZNF281|p.S170Vfs*155|1|0.14|ENSG00000162702|chr1:200409199-200409199|C/-|frameshift_variant;nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281 ZNF281|p.S170Vfs*155|1|0.14|ENSG00000162702|chr1:200409199-200409199|C/-|frameshift_variant ZNF281|p.S170Vfs*155|1|0.14|ENSG00000162702|chr1:200409199-200409199|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23052978515625 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 40.532 1 40.532 40.032 41.032 0 0 0 0 0.15351 1 7539 7539 1.2148 0 1 817 5355 449 449 1009 1009 -0.014885665216525013 AEERWLPY 8 Unmodified _AEERWLPY_ 0 0 0 REV__ENST00000307662.4_1_5:150037325-150037448:+|nuORF REV__ENST00000307662.4_1_5:150037325-150037448:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2697143554688 2 532.263999 1062.51345 0.15215 8.0983E-05 4.022 0.0021408 4.1742 0.0022218 532.7670762408617 40.303 0.14505 37.814 37.721 37.866 -2.4896 7 3 3 0 0 0 0.72861 1 7220 7220 10.183 1.5901 1 1197200 + 818 20450 450 450 1010 1010 -0.015311165908542534 AEESDRDV 8 Unmodified _AEESDRDV_ 0 0 0 REV__ENST00000413631.1_1_13:111591276-111591579:+|nuORF REV__ENST00000413631.1_1_13:111591276-111591579:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24884033203125 2 460.701429 919.388304 -0.081014 -3.7323E-05 1.201 0.0005533 1.12 0.00051598 460.7019277230206 49.074 0.9767 46.068 45.693 46.67 -3.0068 69 27 3 0 0 0 0.75825 1 9031 9031 26.884 0 1 31679000 + 819 16751 451 451 1011 1011 -0.07461453517896643 AEESFRCD 8 Unmodified _AEESFRCD_ 0 0 0 REV__ENSG00000113916|ENST00000406870|BCL6 REV__ENSG00000113916|ENST00000406870|BCL6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7288818359375 2 478.692549 955.370546 0.049702 2.3792E-05 0.9047 0.00043307 0.9544 0.00045686 478.69289751618794 24.858 0.96563 23.324 23.027 23.992 -1.5342 51 27 2 0 0 0 0.85778 1 4105 4105 30.637 5.9627 1 1044500 + 820 15357 452 452 1012 1012 -0.10892492044411028 AEESGITNSA 10 Unmodified _AEESGITNSA_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2568359375 2 489.722361 977.430169 0.21738 0.00010645 -0.20398 -9.9895E-05 0.013395 6.5598E-06 489.7222148517216 23.709 0.82923 23.709 23.303 24.132 0 78 23 4 0 0 0 0.012182 2 4101 4101;4123 103.35 30.9 1 25759000 821 455 453 453 1013;1014 1013 -0.05944897829385809 AEESGITNSA 10 Unmodified _AEESGITNSA_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2687683105469 2 489.722361 977.430169 0.15807 7.741E-05 -0.26708 -0.0001308 -0.10901 -5.3386E-05 489.72219248489654 24.992 0.72363 23.458 23.129 23.853 -1.5342 72 20 4 0 0 0 0.073883 3 4156 4031;4156;4168 72.968 33.018 1 16771000 822 455 453 453 1015;1016;1017 1016 -0.05944897829385809 AEESGITNSA 10 Unmodified _AEESGITNSA_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 979.4420166015625 1 978.437445 977.430169 0.28535 0.0002792 -0.25618 -0.00025066 0.029167 2.8538E-05 978.437169167604 24.986 0.59025 23.451 23.195 23.786 -1.5342 29 16 2 0 0 0 0.26497 1 4066 4066 39.95 10.868 1 1894600 823 455 453 453 1018 1018 -0.05944897829385809 AEESGITNSA 10 Unmodified _AEESGITNSA_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27642822265625 2 489.722361 977.430169 -0.4051 -0.00019839 0.24443 0.0001197 -0.16067 -7.8683E-05 489.722425317171 25.19 0.75915 23.337 22.981 23.74 -1.8534 65 21 4 0 0 0 0.00016105 2 4156 4156;4185 125.53 53.607 1 10649000 824 455 453 453 1019;1020 1019 -0.05944897829385809 AEESGITNSA 10 Unmodified _AEESGITNSA_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 978.437445 977.430169 1.0725 0.0010494 -1.2347 -0.0012081 -0.16218 -0.00015868 978.436174723246 25.005 0.55554 23.356 23.131 23.686 -1.6482 -0.036154 -0.00066677 NaN 39.95 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2298700 825 455 453 453 -0.05944897829385809 AEESGITNSA 10 Unmodified _AEESGITNSA_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 978.437445 977.430169 -0.036931 -3.6135E-05 -0.08917 -8.7247E-05 -0.1261 -0.00012338 978.4374294606747 25.223 0.58866 23.37 23.05 23.638 -1.8534 -0.022783 0.00045405 NaN 39.95 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1274800 826 455 453 453 -0.05944897829385809 AEESITPLT 9 Unmodified _AEESITPLT_ 0 0 0 REV__ENST00000293756.4_1_6:33703348-33714582:-|nuORF REV__ENST00000293756.4_1_6:33703348-33714582:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2493896484375 2 480.747847 959.481142 -0.060564 -2.9116E-05 0.034517 1.6594E-05 -0.026047 -1.2522E-05 480.74791441461934 95.564 0.62537 91.683 91.331 91.956 -3.881 24 17 2 0 0 0 0.13708 3 18323 18323;18335;18359 46.021 11.919 1 1302500 + 827 20361 454 454 1021;1022;1023 1021 -0.00021948784524283838 AEESQGPVL 9 Unmodified _AEESQGPVL_ 0 0 0 nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16;IL16|p.L969Pfs*8|1|0.1|ENSG00000172349|chr15:81300226-81300227|-/C|frameshift_variant nc|ENSG00000172349|Q14005-4|IL16 nc|ENSG00000172349|Q14005-4|IL16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2497863769531 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 75.725 1 72.31 71.81 72.81 -3.4151 0 0 0 0.12288 1 14770 14770 34.102 7.2188 1 828 6210 455 455 1024 1024 -0.01691102098743613 AEESSWQLP 9 Unmodified _AEESSWQLP_ 0 0 0 REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6846313476562 2 523.743096 1045.47164 NaN NaN NaN NaN NaN NaN NaN 103.3 1 99.117 98.617 99.617 -4.1861 0 0 0 0.21469 1 20308 20308 19.257 1.122 1 + 829 22930 456 456 1025 1025 -0.049277170700406714 AEESTTEESL 10 Unmodified _AEESTTEESL_ 0 0 0 nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF;nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.49859619140625 3 365.827786 1094.46153 -0.21094 -7.7168E-05 0.087175 3.1891E-05 -0.12376 -4.5276E-05 365.82778214927527 97.196 0.62299 93.098 92.769 93.392 -4.0978 32 17 2 0 0 0 1.1258 1 19117 19117 0.043787 0.014505 1 2634900 830 9029 457 457 1026 1026 -0.08192369585935921 AEESTTEESL 10 Unmodified _AEESTTEESL_ 0 0 0 nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF;nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 365.827786 1094.46153 -0.43664 -0.00015974 0.031538 1.1537E-05 -0.40511 -0.0001482 365.82776889477134 92.926 0.93127 92.926 92.609 93.54 0 -0.040601 -2.0327E-05 NaN 0.043787 54 26 3 NaN NaN NaN NaN 0 NaN NaN 0 2957000 831 9029 457 457 -0.08192369585935921 AEESTTEESL 10 Unmodified _AEESTTEESL_ 0 0 0 nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF;nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 365.827786 1094.46153 0.15107 5.5264E-05 -0.39864 -0.00014583 -0.24758 -9.057E-05 365.827599100616 97.173 0.7858 92.938 92.607 93.392 -4.2348 -0.027793 -0.00049244 NaN 0.043787 42 22 3 NaN NaN NaN NaN 0 NaN NaN 0 2591000 832 9029 457 457 -0.08192369585935921 AEESTTEESL 10 Unmodified _AEESTTEESL_ 0 0 0 nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF;nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 365.827786 1094.46153 -0.72213 -0.00026418 0.48684 0.0001781 -0.23529 -8.6077E-05 365.82798417805964 96.823 0.67969 92.903 92.648 93.328 -3.9194 -0.063101 0.00047936 NaN 0.043787 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2142200 833 9029 457 457 -0.08192369585935921 AEETAVAIAS 10 Unmodified _AEETAVAIAS_ 0 0 0 tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1 tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1 tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24505615234375 2 481.245472 960.476391 0.40697 0.00019585 -1.5246 -0.0007337 -1.1176 -0.00053785 481.24470624170857 69.919 0.62644 66.339 66.141 66.768 -3.5798 30 17 3 0 0 0 0.26497 2 13209 13194;13209 39.95 19.496 1 2048800 834 26434 458 458 1027;1028 1028 -0.005428329272831434 AEETILRSQ 9 Unmodified _AEETILRSQ_ 0 0 0 REV__nc|ENSG00000112769|Q16363-2|LAMA4 REV__nc|ENSG00000112769|Q16363-2|LAMA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.684326171875 2 523.77747 1045.54039 -0.44332 -0.0002322 1.7912 0.00093819 1.3479 0.00070599 523.7787360395807 17.226 0.27929 16.01 15.811 16.09 -1.2159 17 7 3 0 0 0 0.55539 1 2740 2740 16.149 3.1066 1 535660 + 835 15313 459 459 1029 1029 0.019439472296653548 AEETILRSQ 9 Unmodified _AEETILRSQ_ 0 0 0 REV__nc|ENSG00000112769|Q16363-2|LAMA4 REV__nc|ENSG00000112769|Q16363-2|LAMA4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.77747 1045.54039 0.096468 5.0528E-05 0.026752 1.4012E-05 0.12322 6.454E-05 523.7775510908871 16.113 0.31353 16.113 15.955 16.269 0 0.05154 -0.00034852 NaN 16.149 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1314600 + 836 15313 459 459 0.019439472296653548 AEETKGPAL 9 Unmodified _AEETKGPAL_ 0 0 0 REV__ENST00000454229.1_1_2:6636110-6636479:-|nuORF REV__ENST00000454229.1_1_2:6636110-6636479:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24908447265625 2 458.242732 914.470912 0.28314 0.00012975 0.26822 0.00012291 0.55135 0.00025265 458.24283143633727 30.194 1.8549 28.301 27.651 29.506 -1.8928 165 52 5 0 0 0 0.64382 1 5069 5069 10.074 1.4806 1 75773000 + 837 21838 460 460 1030 1030 0.010254882809135779 AEETPHPWQ 9 Unmodified _AEETPHPWQ_ 0 0 0 ENSG00000106246|ENST00000292478|PTCD1 ENSG00000106246|ENST00000292478|PTCD1 ENSG00000106246|ENST00000292478|PTCD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7720336914062 2 547.748713 1093.48287 0.2651 0.00014521 -0.6344 -0.00034749 -0.3693 -0.00020228 548.2495692607332 61.476 0.83147 58.236 57.858 58.69 -3.2395 40 23 2 0 0 0 0.57447 1 11511 11511 14.838 0.43289 1 1905100 838 2367 461 461 1031 1031 -0.0601289497592461 AEETPPTSV 9 Unmodified _AEETPPTSV_ 0 0 0 MAP1S|p.S788N|1|0.17|ENSG00000130479|chr19:17727747-17727747|G/A|missense_variant;MAP1S|p.R854Gfs*156|1|0.43|ENSG00000130479|chr19:17727944-17727944|C/-|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S MAP1S|p.S788N|1|0.17|ENSG00000130479|chr19:17727747-17727747|G/A|missense_variant MAP1S|p.S788N|1|0.17|ENSG00000130479|chr19:17727747-17727747|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24267578125 2 465.724372 929.434192 -0.081473 -3.7944E-05 -0.044069 -2.0524E-05 -0.12554 -5.8468E-05 465.7242497948263 46.078 1.0062 43.237 42.758 43.764 -2.8409 46 28 2 0 0 0 0.12295 1 8729 8729 64.236 30.134 1 1037700 839 3611 462 462 1032 1032 -0.03334808335648631 AEETPPTSV 9 Unmodified _AEETPPTSV_ 0 0 0 MAP1S|p.S788N|1|0.17|ENSG00000130479|chr19:17727747-17727747|G/A|missense_variant;MAP1S|p.R854Gfs*156|1|0.43|ENSG00000130479|chr19:17727944-17727944|C/-|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S MAP1S|p.S788N|1|0.17|ENSG00000130479|chr19:17727747-17727747|G/A|missense_variant MAP1S|p.S788N|1|0.17|ENSG00000130479|chr19:17727747-17727747|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2505798339844 2 465.724372 929.434192 NaN NaN NaN NaN NaN NaN NaN 46.705 1 43.782 43.282 44.282 -2.9235 0 0 0 0.23508 1 8497 8497 11.64 0 1 840 3611 462 462 1033 1033 -0.03334808335648631 AEETPPTSV 9 Unmodified _AEETPPTSV_ 0 0 0 MAP1S|p.S788N|1|0.17|ENSG00000130479|chr19:17727747-17727747|G/A|missense_variant;MAP1S|p.R854Gfs*156|1|0.43|ENSG00000130479|chr19:17727944-17727944|C/-|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S MAP1S|p.S788N|1|0.17|ENSG00000130479|chr19:17727747-17727747|G/A|missense_variant MAP1S|p.S788N|1|0.17|ENSG00000130479|chr19:17727747-17727747|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2501525878906 2 465.724372 929.434192 -0.051087 -2.3792E-05 -0.28343 -0.000132 -0.33452 -0.00015579 465.7241419663188 46.122 0.6881 43.256 42.934 43.622 -2.8653 32 19 2 0 0 0 0.12295 1 8401 8401 64.236 37.353 1 974100 841 3611 462 462 1034 1034 -0.03334808335648631 AEETPPTSV 9 Unmodified _AEETPPTSV_ 0 0 0 MAP1S|p.S788N|1|0.17|ENSG00000130479|chr19:17727747-17727747|G/A|missense_variant;MAP1S|p.R854Gfs*156|1|0.43|ENSG00000130479|chr19:17727944-17727944|C/-|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S MAP1S|p.S788N|1|0.17|ENSG00000130479|chr19:17727747-17727747|G/A|missense_variant MAP1S|p.S788N|1|0.17|ENSG00000130479|chr19:17727747-17727747|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2397766113281 2 465.724372 929.434192 -0.099417 -4.6301E-05 -0.23833 -0.00011099 -0.33774 -0.00015729 465.7241954571262 46.196 0.68333 43.33 42.963 43.646 -2.8666 30 19 2 0 0 0 0.11171 1 8400 8400 49.933 25.912 1 781000 842 3611 462 462 1035 1035 -0.03334808335648631 AEETYLRY 8 Unmodified _AEETYLRY_ 0 0 0 REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35 REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27197265625 2 522.753464 1043.49238 0.41833 0.00021868 -0.54463 -0.00028471 -0.12631 -6.6027E-05 522.7533305616746 72.926 0.99956 69.388 68.713 69.712 -3.5385 39 28 2 0 0 0 1.0011 1 13770 13770 4.3292 0 1 3138800 + 843 14790 463 463 1036 1036 -0.027631266903881624 AEEVAARLA 9 Unmodified _AEEVAARLA_ 0 0 0 REV__ENSG00000181284|ENST00000323206|TMEM102 REV__ENSG00000181284|ENST00000323206|TMEM102 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.255859375 2 465.256174 928.497795 0.10396 4.8367E-05 0.041142 1.9142E-05 0.1451 6.7509E-05 465.2561819567488 53.761 1.3077 53.761 53.422 54.729 0 65 36 2 0 0 0 0.19171 1 10388 10388 38.176 3.2435 1 3925000 + 844 18726 464 464 1037 1037 0.030685968920806772 AEEVAARLA 9 Unmodified _AEEVAARLA_ 0 0 0 REV__ENSG00000181284|ENST00000323206|TMEM102 REV__ENSG00000181284|ENST00000323206|TMEM102 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2566223144531 2 465.256174 928.497795 0.029001 1.3493E-05 0.6438 0.00029953 0.67281 0.00031303 465.2563732617557 56.319 0.91235 53.129 52.846 53.759 -3.1895 33 25 2 0 0 0 0.46882 1 10544 10544 21.537 0 1 4210900 + 845 18726 464 464 1038 1038 0.030685968920806772 AEEVAARLA 9 Unmodified _AEEVAARLA_ 0 0 0 REV__ENSG00000181284|ENST00000323206|TMEM102 REV__ENSG00000181284|ENST00000323206|TMEM102 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2557373046875 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 57.146 1 53.956 53.456 54.456 -3.1895 0 0 0 0.22519 1 10605 10605 16.149 1.5674 1 + 846 18726 464 464 1039 1039 0.030685968920806772 AEEVAQEM 8 Unmodified _AEEVAQEM_ 0 0 0 WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant;WNK4|p.V608Cfs*53|4|0.4|ENSG00000126562|chr17:42787852-42787852|G/-|frameshift_variant;WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant;nc|ENSG00000126562|Q96J92-3|WNK4;WNK4|p.V1234*|1|0.28|ENSG00000126562|chr17:42796545-42796545|G/-|frameshift_variant;ENSG00000126562|ENST00000246914|WNK4;ENST00000587705.5_1_17:40937392-40940185:+|nuORF;nc|ENSG00000126562|Q96J92-2|WNK4 WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7581481933594 2 453.6973 905.380048 0.45259 0.00020534 -0.20155 -9.1444E-05 0.25104 0.0001139 453.6972026666325 50.133 0.68619 50.133 49.719 50.405 0 34 19 2 0 0 0 0.78482 1 9439 9439 32.305 22.922 1 1512400 847 3437 465 465 1040 1040 -0.07642723758874581 AEEVAQEM 8 Unmodified _AEEVAQEM_ 0 0 0 WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant;WNK4|p.V608Cfs*53|4|0.4|ENSG00000126562|chr17:42787852-42787852|G/-|frameshift_variant;WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant;nc|ENSG00000126562|Q96J92-3|WNK4;WNK4|p.V1234*|1|0.28|ENSG00000126562|chr17:42796545-42796545|G/-|frameshift_variant;ENSG00000126562|ENST00000246914|WNK4;ENST00000587705.5_1_17:40937392-40940185:+|nuORF;nc|ENSG00000126562|Q96J92-2|WNK4 WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.6973 905.380048 -0.30958 -0.00014046 0.39857 0.00018083 0.088992 4.0375E-05 453.6974562725064 52.899 0.92912 50.015 49.591 50.52 -2.8837 -0.076363 0.00030764 NaN 32.305 44 26 2 NaN NaN NaN NaN 0 NaN NaN 0 5261600 848 3437 465 465 -0.07642723758874581 AEEVAQEM 8 Unmodified _AEEVAQEM_ 0 0 0 WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant;WNK4|p.V608Cfs*53|4|0.4|ENSG00000126562|chr17:42787852-42787852|G/-|frameshift_variant;WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant;nc|ENSG00000126562|Q96J92-3|WNK4;WNK4|p.V1234*|1|0.28|ENSG00000126562|chr17:42796545-42796545|G/-|frameshift_variant;ENSG00000126562|ENST00000246914|WNK4;ENST00000587705.5_1_17:40937392-40940185:+|nuORF;nc|ENSG00000126562|Q96J92-2|WNK4 WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 453.6973 905.380048 0.0019689 8.9326E-07 0.11019 4.9993E-05 0.11216 5.0886E-05 453.69729326374517 53.22 0.88329 50.132 49.654 50.537 -3.0876 0.040608 4.596E-05 NaN 32.305 47 24 3 NaN NaN NaN NaN 0 NaN NaN 0 2808600 849 3437 465 465 -0.07642723758874581 AEEVATFY 8 Unmodified _AEEVATFY_ 0 0 0 ENSG00000184428|ENST00000329245|TOP1MT ENSG00000184428|ENST00000329245|TOP1MT ENSG00000184428|ENST00000329245|TOP1MT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25579833984375 2 465.216183 928.417813 NaN NaN NaN NaN NaN NaN NaN 43.707 1 40.959 40.459 41.459 -2.7475 0 0 0 0.21323 1 7900 7900 14.582 1.0738 1 850 6909 466 466 1041 1041 -0.049258895017715076 AEEVATFY 8 Unmodified _AEEVATFY_ 0 0 0 ENSG00000184428|ENST00000329245|TOP1MT ENSG00000184428|ENST00000329245|TOP1MT ENSG00000184428|ENST00000329245|TOP1MT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2478942871094 2 465.216183 928.417813 NaN NaN NaN NaN NaN NaN NaN 101.66 1 97.638 97.138 98.138 -4.0212 0 0 0 0.21323 1 19534 19534 14.582 0 1 851 6909 466 466 1042 1042 -0.049258895017715076 AEEVIFWKWVS 11 Unmodified _AEEVIFWKWVS_ 0 0 0 CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.P253Sfs*7|1|0.11|ENSG00000070371|chr22:19239313-19239314|-/A|frameshift_variant;CLTCL1|p.M473Ifs*76|1|0.05|ENSG00000070371|chr22:19233268-19233269|-/TCGG|frameshift_variant;CLTCL1|p.T738Qfs*24|1|0.03|ENSG00000070371|chr22:19223971-19223972|-/TTCTG|frameshift_variant CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2418518066406 3 465.243206 1392.70779 NaN NaN NaN NaN NaN NaN NaN 70.777 1 67.31 66.81 67.81 -3.467 0 0 0 0.22632 1 13407 13407 0.00056442 0 1 852 588 467 467 1043 1043 0.027142147744143585 AEEVQQVA 8 Unmodified _AEEVQQVA_ 0 0 0 REV__ENSG00000173905|ENST00000470487|GOLIM4 REV__ENSG00000173905|ENST00000470487|GOLIM4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2288818359375 2 437.219257 872.423961 0.10578 4.6249E-05 -0.085915 -3.7564E-05 0.019865 8.6852E-06 437.21922158631816 35.655 1.2131 33.402 33.09 34.303 -2.2527 74 34 3 0 0 0 8448 1 6395 6395 6.3914 2.7987 1 3794300 + 853 18382 468 468 1044 1044 -0.017353712702401936 AEEVRNPD 8 Unmodified _AEEVRNPD_ 0 0 0 REV__tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1 REV__tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2488098144531 2 465.219788 928.425024 NaN NaN NaN NaN NaN NaN NaN 78.138 1 74.479 73.979 74.979 -3.6588 0 0 0 0.22692 1 14884 14884 0.25148 0 1 + 854 25226 469 469 1045 1045 -0.0420515690133243 AEEVRYPNLL 10 Unmodified _AEEVRYPNLL_ 0 0 0 REV__nc|ENSG00000064933|P54277-3|PMS1 REV__nc|ENSG00000064933|P54277-3|PMS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 401.3544921875 3 401.883789 1202.62954 0.1343 5.3972E-05 -0.14312 -5.7518E-05 -0.008822 -3.5454E-06 401.88364560341273 40.29 0.4257 40.29 39.998 40.424 0 19 11 3 0 0 0 0.89521 1 7453 7453 3.5871 0.26742 1 1472800 + 855 14177 470 470 1046 1046 0.036327821891973144 AEEVRYPNLL 10 Unmodified _AEEVRYPNLL_ 0 0 0 REV__nc|ENSG00000064933|P54277-3|PMS1 REV__nc|ENSG00000064933|P54277-3|PMS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 401.883789 1202.62954 -0.303 -0.00012177 -0.30184 -0.00012131 -0.60484 -0.00024308 401.883763534981 42.995 0.38548 40.276 40.022 40.408 -2.7191 -0.0096737 -0.0002828 NaN 3.5871 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1492900 + 856 14177 470 470 0.036327821891973144 AEEVRYPNLL 10 Unmodified _AEEVRYPNLL_ 0 0 0 REV__nc|ENSG00000064933|P54277-3|PMS1 REV__nc|ENSG00000064933|P54277-3|PMS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 401.883789 1202.62954 -0.066741 -2.6822E-05 -0.44484 -0.00017878 -0.51158 -0.0002056 401.88361691894914 42.964 0.33934 40.313 40.024 40.363 -2.651 0.0274 -0.00045521 NaN 3.5871 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1164100 + 857 14177 470 470 0.036327821891973144 AEEVRYPNLL 10 Unmodified _AEEVRYPNLL_ 0 0 0 REV__nc|ENSG00000064933|P54277-3|PMS1 REV__nc|ENSG00000064933|P54277-3|PMS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 401.883789 1202.62954 -0.52909 -0.00021263 0.33314 0.00013388 -0.19595 -7.875E-05 401.8838755089177 42.869 0.40925 40.263 40.004 40.413 -2.606 -0.022326 0.00048277 NaN 3.5871 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1052900 + 858 14177 470 470 0.036327821891973144 AEEVSGRY 8 Unmodified _AEEVSGRY_ 0 0 0 REV__ZNF552|p.S210Afs*9|1|0.33|ENSG00000178935|chr19:57808636-57808636|T/-|frameshift_variant REV__ZNF552|p.S210Afs*9|1|0.33|ENSG00000178935|chr19:57808636-57808636|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 455.24847412109375 2 455.716882 909.41921 NaN NaN NaN NaN NaN NaN NaN 69.005 1 65.825 65.325 66.325 -3.1796 0 0 0 0.21323 1 13410 13410 14.582 5.2343 1 + 859 18627 471 471 1047 1047 -0.03912255412990362 AEEVVWRA 8 Unmodified _AEEVVWRA_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25439453125 2 480.250892 958.48723 -0.32752 -0.00015729 0.3194 0.00015339 -0.0081217 -3.9004E-06 480.25116058977056 58.688 0.89688 58.688 58.279 59.176 0 59 25 3 0 0 0 0.66265 1 11172 11172 18.135 4.6271 1 4176100 860 6634 472 472 1048 1048 0.006326142376565258 AEEVYTRVV 9 Unmodified _AEEVYTRVV_ 0 0 0 ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA ENST00000477618.1_1_9:74817496-74842957:+|nuORF ENST00000477618.1_1_9:74817496-74842957:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.283447265625 2 533.282389 1064.55022 -0.12727 -6.7868E-05 1.0983 0.00058571 0.97105 0.00051784 533.283199294547 69.987 0.7851 69.987 69.524 70.309 0 33 21 2 0 0 0 0.048406 3 13520 13520;13565;13610 71.708 35.202 1 3815600 861 3060 473 473 1049;1050;1051 1049 0.02053135235018999 AEEVYTRVV 9 Unmodified _AEEVYTRVV_ 0 0 0 ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA ENST00000477618.1_1_9:74817496-74842957:+|nuORF ENST00000477618.1_1_9:74817496-74842957:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2821655273438 2 533.282389 1064.55022 -0.028667 -1.5288E-05 0.43519 0.00023208 0.40652 0.00021679 533.282739097667 73.171 0.93324 69.86 69.49 70.423 -3.3107 50 21 3 0 0 0 0.048406 3 14267 14224;14267;14318 71.708 35.581 1 5105200 862 3060 473 473 1052;1053;1054 1053 0.02053135235018999 AEEVYTRVV 9 Unmodified _AEEVYTRVV_ 0 0 0 ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA ENST00000477618.1_1_9:74817496-74842957:+|nuORF ENST00000477618.1_1_9:74817496-74842957:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2825317382812 2 533.282389 1064.55022 0.59808 0.00031895 -0.35954 -0.00019174 0.23854 0.00012721 533.2824622123383 73.483 0.87237 69.806 69.474 70.347 -3.6764 46 21 3 0 0 0 0.037522 4 13911 13862;13909;13911;13965 76.825 36.875 1 4028400 863 3060 473 473 1055;1056;1057;1058 1057 0.02053135235018999 AEEVYTRVV 9 Unmodified _AEEVYTRVV_ 0 0 0 ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA ENST00000477618.1_1_9:74817496-74842957:+|nuORF ENST00000477618.1_1_9:74817496-74842957:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2821655273438 2 533.282389 1064.55022 0.42705 0.00022774 0.043554 2.3227E-05 0.4706 0.00025096 533.2827033400284 73.58 0.87363 69.986 69.489 70.362 -3.594 53 24 4 0 0 0 0.048406 3 13949 13901;13949;13990 71.708 35.581 1 4877800 864 3060 473 473 1059;1060;1061 1060 0.02053135235018999 AEEWGEPL 8 Unmodified _AEEWGEPL_ 0 0 0 REV__WWC1|p.S255Lfs*26|1|0.42|ENSG00000113645|chr5:168408544-168408544|G/-|frameshift_variant REV__WWC1|p.S255Lfs*26|1|0.42|ENSG00000113645|chr5:168408544-168408544|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2501525878906 2 465.713808 929.413062 0.13038 6.072E-05 0.2836 0.00013208 0.41398 0.0001928 465.71395311401386 73.297 0.49599 73.297 72.989 73.485 0 22 13 2 0 0 0 0.89552 1 14165 14165 13.508 0 1 2497800 + 865 15351 474 474 1062 1062 -0.054467736445189985 AEEYCHKHY 9 Unmodified _AEEYCHKHY_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000562258.5_1_15:42452954-42456706:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.248779296875 2 590.248023 1178.48149 NaN NaN NaN NaN NaN NaN NaN 35.427 1 35.427 34.927 35.927 0 0 0 0 0.23508 1 6504 6504 4.756 0 1 866 5759 475 475 1063 1063 -0.10060852336300741 AEEYCHKHY 9 Unmodified _AEEYCHKHY_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000562258.5_1_15:42452954-42456706:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.248046875 2 590.248023 1178.48149 NaN NaN NaN NaN NaN NaN NaN 41.578 1 41.578 41.078 42.078 0 0 0 0 0.23508 1 7759 7759 4.756 0 1 867 5759 475 475 1064 1064 -0.10060852336300741 AEEYCHKHY 9 Unmodified _AEEYCHKHY_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000562258.5_1_15:42452954-42456706:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2503662109375 2 590.248023 1178.48149 NaN NaN NaN NaN NaN NaN NaN 34.962 1 32.568 32.068 33.068 -2.3938 0 0 0 0.23508 1 6431 6431 4.756 0.42677 1 868 5759 475 475 1065 1065 -0.10060852336300741 AEEYCHKHY 9 Unmodified _AEEYCHKHY_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000562258.5_1_15:42452954-42456706:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2481689453125 2 590.248023 1178.48149 NaN NaN NaN NaN NaN NaN NaN 64.846 1 61.388 60.888 61.888 -3.4581 0 0 0 0.23508 1 12128 12128 4.756 0 1 869 5759 475 475 1066 1066 -0.10060852336300741 AEEYEREYR 9 Unmodified _AEEYEREYR_ 0 0 0 nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7811889648438 2 622.780741 1243.54693 NaN NaN NaN NaN NaN NaN NaN 48.318 1 45.368 44.868 45.868 -2.9499 0 0 0 0.23508 1 8842 8842 4.3292 0.38484 1 870 7458 476 476 1067 1067 -0.06510159609615584 AEEYIAKEI 9 Unmodified _AEEYIAKEI_ 0 0 0 REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1 REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27490234375 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 94.036 1 89.892 89.392 90.392 -4.1435 0 0 0 0.12123 1 17931 17931 34.402 3.7652 1 + 871 25097 477 477 1068 1068 0.009303131409069465 AEEYQSSY 8 Unmodified _AEEYQSSY_ 0 0 0 REV__FLCN|p.H429Pfs*27|1|0.31|ENSG00000154803|chr17:17216394-17216395|-/G|frameshift_variant REV__FLCN|p.H429Pfs*27|1|0.31|ENSG00000154803|chr17:17216394-17216395|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 488.7695617675781 2 488.698355 975.382156 NaN NaN NaN NaN NaN NaN NaN 98.088 1 93.819 93.319 94.319 -4.2692 0 0 0 0.22625 1 18744 18744 0.25148 0 1 + 872 17196 478 478 1069 1069 -0.10651971749416589 AEFAERSVA 9 Unmodified _AEFAERSVA_ 0 0 0 TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3 TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27398681640625 2 490.245806 978.47706 0.34147 0.0001674 0.093233 4.5707E-05 0.4347 0.00021311 490.2457823424195 40.082 0.8516 40.082 39.752 40.604 0 82 23 5 0 0 0 0.015383 1 7423 7423 96.936 18.207 1 115560000 + 873 695 479 479 1070 1070 -0.013039934875791914 AEFAERSVA 9 Unmodified _AEFAERSVA_ 0 0 0 TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3 TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2673645019531 2 490.245806 978.47706 -0.0032277 -1.5824E-06 -0.34022 -0.00016679 -0.34345 -0.00016837 490.2455316195443 42.897 1.0428 40.178 39.659 40.702 -2.7191 91 28 5 0 0 0 0.1155 1 8075 8075 71.708 13.029 1 98194000 + 874 695 479 479 1071 1071 -0.013039934875791914 AEFAERSVA 9 Unmodified _AEFAERSVA_ 0 0 0 TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3 TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2737121582031 2 490.245806 978.47706 0.040028 1.9624E-05 -0.25268 -0.00012388 -0.21265 -0.00010425 490.24562223661457 42.797 1.2447 40.146 39.811 41.055 -2.651 95 34 5 0 0 0 0.024872 1 7680 7680 87.258 8.5302 1 104140000 + 875 695 479 479 1072 1072 -0.013039934875791914 AEFAERSVA 9 Unmodified _AEFAERSVA_ 0 0 0 TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28;ENSG00000143549|ENST00000651641|TPM3 TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26715087890625 2 490.245806 978.47706 -0.25256 -0.00012382 0.16976 8.3222E-05 -0.082804 -4.0594E-05 490.2457905465416 42.815 1.5411 40.209 39.577 41.118 -2.606 107 43 4 0 0 0 0.14836 1 7762 7762 47.732 13.33 1 78347000 + 876 695 479 479 1073 1073 -0.013039934875791914 AEFATTYK 8 Unmodified _AEFATTYK_ 0 0 0 tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2381286621094 2 465.732 929.449448 0.10269 4.7827E-05 -0.20433 -9.5164E-05 -0.10164 -4.7337E-05 465.7318387560566 32.426 0.63615 30.196 29.798 30.434 -2.2305 38 17 3 0 0 0 0.97966 1 5929 5929 11.64 6.4096 1 5138000 877 26184 480 480 1074 1074 -0.018098967478181294 AEFCNAMAHRL 11 Unmodified _AEFCNAMAHRL_ 0 0 0 REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 421.3223876953125 3 421.530475 1261.5696 0.31518 0.00013286 -0.47963 -0.00020218 -0.16445 -6.932E-05 421.5302067732238 29.927 0.45806 28.034 27.785 28.243 -1.8928 25 12 3 0 0 0 0.96165 1 5096 5096 2.4348 0.69251 1 1125700 + 878 15338 481 481 1075 1075 -0.05072555017341074 AEFCNAMAHRL 11 Unmodified _AEFCNAMAHRL_ 0 0 0 REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 421.530475 1261.5696 0.13126 5.533E-05 -0.92425 -0.0003896 -0.79299 -0.00033427 421.53011114421327 27.971 0.41249 27.971 27.7 28.113 0 -0.01131 -0.00031066 NaN 2.4348 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 999970 + 879 15338 481 481 -0.05072555017341074 AEFCNAMAHRL 11 Unmodified _AEFCNAMAHRL_ 0 0 0 REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 421.530475 1261.5696 0.36758 0.00015495 -0.61726 -0.00026019 -0.24967 -0.00010524 421.53005762988244 30.064 0.48788 27.947 27.701 28.189 -2.1167 -0.035589 7.7558E-05 NaN 2.4348 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1133000 + 880 15338 481 481 -0.05072555017341074 AEFEDFPET 9 Unmodified _AEFEDFPET_ 0 0 0 nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000468018.5_1_2:242577129-242590612:+|nuORF;ENST00000494465.5_1_2:242577129-242592771:+|nuORF;ENST00000430617.6_3_2:242577147-242592771:+|nuORF;ENST00000483778.5_1_2:242577129-242598587:+|nuORF;ENST00000465399.5_1_2:242577129-242594780:+|nuORF;ENST00000475195.5_1_2:242577129-242594181:+|nuORF;ENST00000493618.5_1_2:242577129-242598937:+|nuORF nc|ENSG00000168397|Q9Y4P1-6|ATG4B nc|ENSG00000168397|Q9Y4P1-6|ATG4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.773193359375 2 542.727112 1083.43967 0.070291 3.8149E-05 0.2159 0.00011718 0.2862 0.00015533 542.7272869782062 113.19 0.9828 108.67 108.22 109.2 -4.5259 63 27 3 0 0 0 0.57447 1 21729 21729 14.838 10.082 1 2735900 881 5904 482 482 1076 1076 -0.09871129543853385 AEFEDFPET 9 Unmodified _AEFEDFPET_ 0 0 0 nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000468018.5_1_2:242577129-242590612:+|nuORF;ENST00000494465.5_1_2:242577129-242592771:+|nuORF;ENST00000430617.6_3_2:242577147-242592771:+|nuORF;ENST00000483778.5_1_2:242577129-242598587:+|nuORF;ENST00000465399.5_1_2:242577129-242594780:+|nuORF;ENST00000475195.5_1_2:242577129-242594181:+|nuORF;ENST00000493618.5_1_2:242577129-242598937:+|nuORF nc|ENSG00000168397|Q9Y4P1-6|ATG4B nc|ENSG00000168397|Q9Y4P1-6|ATG4B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.727112 1083.43967 0.47757 0.00025919 0.21713 0.00011784 0.6947 0.00037703 542.7271848388282 108.43 1.1217 108.43 107.8 108.92 0 -0.18093 0.00010482 NaN 14.838 47 31 2 NaN NaN NaN NaN 0 NaN NaN 0 2667600 882 5904 482 482 -0.09871129543853385 AEFEDFPET 9 Unmodified _AEFEDFPET_ 0 0 0 nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000468018.5_1_2:242577129-242590612:+|nuORF;ENST00000494465.5_1_2:242577129-242592771:+|nuORF;ENST00000430617.6_3_2:242577147-242592771:+|nuORF;ENST00000483778.5_1_2:242577129-242598587:+|nuORF;ENST00000465399.5_1_2:242577129-242594780:+|nuORF;ENST00000475195.5_1_2:242577129-242594181:+|nuORF;ENST00000493618.5_1_2:242577129-242598937:+|nuORF nc|ENSG00000168397|Q9Y4P1-6|ATG4B nc|ENSG00000168397|Q9Y4P1-6|ATG4B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.727112 1083.43967 0.07307 3.9657E-05 0.24352 0.00013216 0.31659 0.00017182 542.7271717840224 113.16 0.89694 108.71 108.29 109.18 -4.4539 0.096763 0.00013347 NaN 14.838 57 24 3 NaN NaN NaN NaN 0 NaN NaN 0 3454400 883 5904 482 482 -0.09871129543853385 AEFEDFPET 9 Unmodified _AEFEDFPET_ 0 0 0 nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000468018.5_1_2:242577129-242590612:+|nuORF;ENST00000494465.5_1_2:242577129-242592771:+|nuORF;ENST00000430617.6_3_2:242577147-242592771:+|nuORF;ENST00000483778.5_1_2:242577129-242598587:+|nuORF;ENST00000465399.5_1_2:242577129-242594780:+|nuORF;ENST00000475195.5_1_2:242577129-242594181:+|nuORF;ENST00000493618.5_1_2:242577129-242598937:+|nuORF nc|ENSG00000168397|Q9Y4P1-6|ATG4B nc|ENSG00000168397|Q9Y4P1-6|ATG4B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.727112 1083.43967 0.66094 0.00035871 -0.25202 -0.00013678 0.40891 0.00022193 542.7269162228715 112.91 1.0529 108.64 108.15 109.2 -4.2725 0.0274 -0.00040442 NaN 14.838 66 29 3 NaN NaN NaN NaN 0 NaN NaN 0 3006300 884 5904 482 482 -0.09871129543853385 AEFEITEENY 10 Unmodified _AEFEITEENY_ 0 0 0 tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1 tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1 tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7706909179688 2 622.769508 1243.52446 NaN NaN NaN NaN NaN NaN NaN 39.094 1 36.545 36.045 37.045 -2.5491 0 0 0 0.22588 1 7260 7260 3.9444 0 1 885 26000 483 483 1077 1077 -0.08755803797885164 AEFEITEENY 10 Unmodified _AEFEITEENY_ 0 0 0 tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1 tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1 tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7693481445312 2 622.769508 1243.52446 NaN NaN NaN NaN NaN NaN NaN 39.798 1 37.393 36.893 37.893 -2.4049 0 0 0 0.22588 1 7108 7108 3.9444 0 1 886 26000 483 483 1078 1078 -0.08755803797885164 AEFEITEENY 10 Unmodified _AEFEITEENY_ 0 0 0 tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1 tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1 tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.771240234375 2 622.769508 1243.52446 NaN NaN NaN NaN NaN NaN NaN 40.787 1 38.297 37.797 38.797 -2.4896 0 0 0 0.22588 1 7309 7309 3.9444 0 1 887 26000 483 483 1079 1079 -0.08755803797885164 AEFELPKTM 9 Oxidation (M) _AEFELPKTM(Oxidation (M))_ AEFELPKTM(1) AEFELPKTM(140) 0 0 1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2651977539062 2 541.26535 1080.51615 0.26512 0.0001435 -0.28655 -0.0001551 -0.021428 -1.1598E-05 541.2651650368053 86.233 1.2995 86.233 85.612 86.911 0 90 36 3 0 0 0 4.8487E-06 7 16818 16729;16746;16816;16818;16864;16868;16912 140.63 88.365 1 26862000 888 1760 484 484 1080;1081;1082;1083;1084;1085;1086 1083 14 -0.020890292482363293 AEFELPKTM 9 Oxidation (M) _AEFELPKTM(Oxidation (M))_ AEFELPKTM(1) AEFELPKTM(120) 0 0 1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2653198242188 2 541.26535 1080.51615 0.14323 7.7524E-05 -0.22716 -0.00012295 -0.083931 -4.5429E-05 541.2652585454216 90.185 1.1678 86.326 85.761 86.929 -3.8595 103 32 4 0 0 0 0.0024928 3 17652 17652;17690;17736 117.76 65.492 1 20749000 889 1760 484 484 1087;1088;1089 1087 14 -0.020890292482363293 AEFELPKTM 9 Oxidation (M) _AEFELPKTM(Oxidation (M))_ AEFELPKTM(1) AEFELPKTM(140) 0 0 1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2653198242188 2 541.26535 1080.51615 0.41746 0.00022596 -0.44506 -0.0002409 -0.0276 -1.4939E-05 541.2651535657421 90.456 1.1584 86.412 85.773 86.931 -4.0443 95 32 4 0 0 0 4.8487E-06 5 17198 17154;17156;17165;17198;17242 140.63 92.884 1 13596000 890 1760 484 484 1090;1091;1092;1093;1094 1093 14 -0.020890292482363293 AEFELPKTM 9 Oxidation (M) _AEFELPKTM(Oxidation (M))_ AEFELPKTM(1) AEFELPKTM(140) 0 0 1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2653198242188 2 541.26535 1080.51615 0.25721 0.00013922 -0.40327 -0.00021828 -0.14606 -7.9059E-05 541.2651860845815 90.019 1.289 86.241 85.703 86.992 -3.7779 110 36 5 0 0 0 4.8487E-06 3 17257 17171;17257;17303 140.63 90.7 1 21167000 891 1760 484 484 1095;1096;1097 1096 14 -0.020890292482363293 AEFELPKTM 9 Unmodified _AEFELPKTM_ 0 0 0 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2680053710938 2 533.267893 1064.52123 0.099169 5.2883E-05 0.077388 4.1269E-05 0.17656 9.4152E-05 533.2679166870123 121.2 1.0447 121.2 120.64 121.68 0 85 28 4 0 0 0 2.5802E-07 4 23892 23819;23892;23937;23980 143.91 101.81 1 33802000 892 1760 484 485 1098;1099;1100;1101 1099 -0.00844725385604761 AEFELPKTM 9 Unmodified _AEFELPKTM_ 0 0 0 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2679443359375 2 533.267893 1064.52123 0.20258 0.00010803 -0.20487 -0.00010925 -0.0022881 -1.2202E-06 533.2678100510715 125.68 1.1358 121.08 120.51 121.64 -4.5984 106 31 4 0 0 0 4.8487E-06 3 24813 24726;24769;24813 140.63 98.539 1 44174000 893 1760 484 485 1102;1103;1104 1104 -0.00844725385604761 AEFELPKTM 9 Unmodified _AEFELPKTM_ 0 0 0 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2679443359375 2 533.267893 1064.52123 0.67509 0.00036001 -0.70883 -0.000378 -0.033736 -1.799E-05 533.2675646014012 125.86 1.1542 121.09 120.54 121.7 -4.7681 101 32 5 0 0 0 6.9608E-05 5 24145 24066;24086;24145;24196;24242 128.93 86.838 1 41134000 894 1760 484 485 1105;1106;1107;1108;1109 1107 -0.00844725385604761 AEFELPKTM 9 Unmodified _AEFELPKTM_ 0 0 0 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2680053710938 2 533.267893 1064.52123 0.26252 0.00013999 -0.16274 -8.6782E-05 0.099783 5.3211E-05 533.2678256984582 125.77 1.2014 121.13 120.49 121.7 -4.6495 102 33 4 0 0 0 6.9608E-05 5 24195 24098;24145;24195;24239;24288 128.93 94.83 1 33187000 895 1760 484 485 1110;1111;1112;1113;1114 1112 -0.00844725385604761 AEFGQAESA 9 Unmodified _AEFGQAESA_ 0 0 0 ENST00000470396.1_1_1:151238797-151239150:+|nuORF;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4 ENST00000470396.1_1_1:151238797-151239150:+|nuORF ENST00000470396.1_1_1:151238797-151239150:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 910.3981323242188 1 909.394852 908.387576 0.54507 0.00049568 -0.23882 -0.00021719 0.30624 0.0002785 909.3946002554682 35.694 0.76049 35.694 35.31 36.07 0 39 21 3 0 0 0 0.48707 1 6563 6563 20.415 1.1575 1 4107500 896 5204 485 486 1115 1115 -0.07028248166955109 AEFGQAESA 9 Unmodified _AEFGQAESA_ 0 0 0 ENST00000470396.1_1_1:151238797-151239150:+|nuORF;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4 ENST00000470396.1_1_1:151238797-151239150:+|nuORF ENST00000470396.1_1_1:151238797-151239150:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.3981323242188 1 909.394852 908.387576 -0.14267 -0.00012974 0.40087 0.00036455 0.25821 0.00023481 909.3951347648392 38.162 0.76115 35.693 35.297 36.058 -2.4688 39 21 2 0 0 0 0.25183 2 7061 7061;7113 34.402 7.5181 1 4626600 897 5204 485 486 1116;1117 1116 -0.07028248166955109 AEFGQAESA 9 Unmodified _AEFGQAESA_ 0 0 0 ENST00000470396.1_1_1:151238797-151239150:+|nuORF;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4 ENST00000470396.1_1_1:151238797-151239150:+|nuORF ENST00000470396.1_1_1:151238797-151239150:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 910.3982543945312 1 909.394852 908.387576 0.29913 0.00027203 0.03554 3.2319E-05 0.33467 0.00030435 909.3949110769679 38.149 0.73841 35.707 35.315 36.054 -2.4419 44 20 3 0 0 0 0.15214 2 6810 6720;6810 43.858 13.222 1 5014000 898 5204 485 486 1118;1119 1119 -0.07028248166955109 AEFGQAESA 9 Unmodified _AEFGQAESA_ 0 0 0 ENST00000470396.1_1_1:151238797-151239150:+|nuORF;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4 ENST00000470396.1_1_1:151238797-151239150:+|nuORF ENST00000470396.1_1_1:151238797-151239150:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.3982543945312 1 909.394852 908.387576 0.34328 0.00031218 0.082879 7.537E-05 0.42616 0.00038755 909.3949852222235 38.103 0.83217 35.752 35.384 36.216 -2.3509 38 23 2 0 0 0 0.15274 1 6814 6814 43.772 22.026 1 4319200 899 5204 485 486 1120 1120 -0.07028248166955109 AEFHWAYSA 9 Unmodified _AEFHWAYSA_ 0 0 0 REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2844848632812 2 541.240524 1080.46649 0.46024 0.0002491 -0.27655 -0.00014968 0.18369 9.9421E-05 541.2403353376585 34.092 0.38319 31.876 31.705 32.088 -2.2158 18 10 2 0 0 0 0.74655 1 5983 5983 21.747 21.747 1 1210100 + 900 15651 486 487 1121 1121 -0.07051976141997329 AEFIRYGVMHR 11 Unmodified _AEFIRYGVMHR_ 0 0 0 tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1 tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1 tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23907470703125 3 460.239801 1377.69757 NaN NaN NaN NaN NaN NaN NaN 70.543 1 66.963 66.463 67.463 -3.5798 0 0 0 0.22632 1 13297 13297 0.58532 0.57936 1 901 26225 487 488 1122 1122 0.023833285681803318 AEFIVAKA 8 Unmodified _AEFIVAKA_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2439270019531 2 424.747453 847.480354 0.033559 1.4254E-05 0.096655 4.1054E-05 0.13021 5.5308E-05 424.74746094838287 72.236 0.59137 72.236 71.88 72.471 0 33 16 3 0 0 0 0.25522 4 13957 13957;13972;14022;14026 64.86 31.267 1 4283400 902 2466 488 489 1123;1124;1125;1126 1123 0.050513013570821386 AEFIVAKA 8 Unmodified _AEFIVAKA_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2499694824219 2 424.747453 847.480354 -0.20921 -8.886E-05 0.79935 0.00033952 0.59015 0.00025066 424.7476864317067 75.437 0.578 72.022 71.647 72.225 -3.4151 35 16 3 0 0 0 0.35341 3 14683 14680;14683;14725 72.187 33.076 1 5073200 903 2466 488 489 1127;1128;1129 1128 0.050513013570821386 AEFIVAKA 8 Unmodified _AEFIVAKA_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24945068359375 2 424.747453 847.480354 0.087539 3.7182E-05 0.38389 0.00016305 0.47142 0.00020024 424.747526983812 75.729 0.55114 72.006 71.725 72.276 -3.7227 31 15 3 0 0 0 0.25522 5 14312 14307;14310;14312;14358;14361 64.86 31.267 1 5146100 904 2466 488 489 1130;1131;1132;1133;1134 1132 0.050513013570821386 AEFIVAKA 8 Unmodified _AEFIVAKA_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2498779296875 2 424.747453 847.480354 -0.035775 -1.5195E-05 0.45154 0.00019179 0.41577 0.0001766 424.7475862428632 75.684 0.55596 72.05 71.749 72.305 -3.6337 33 15 3 0 0 0 0.25522 3 14366 14363;14366;14416 64.86 36.4 1 4107900 905 2466 488 489 1135;1136;1137 1136 0.050513013570821386 AEFKDLVHQ 9 Unmodified _AEFKDLVHQ_ 0 0 0 REV__ENSG00000186184|ENST00000302979|POLR1D REV__ENSG00000186184|ENST00000302979|POLR1D MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7832641601562 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 40.551 1 38.012 37.512 38.512 -2.5398 0 0 0 0.1761 1 7270 7270 26.884 2.8631 1 + 906 19018 489 490 1138 1138 0.011205549548776617 AEFLESRK 8 Unmodified _AEFLESRK_ 0 0 0 REV__ENSG00000141968|ENST00000602142|VAV1 REV__ENSG00000141968|ENST00000602142|VAV1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2651672363281 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 54.394 1 51.256 50.756 51.756 -3.1377 0 0 0 0.2343 1 10066 10066 0.063987 0 1 + 907 16654 490 491 1139 1139 0.023328834091330464 AEFLSEKV 8 Unmodified _AEFLSEKV_ 0 0 0 REV__ENST00000521040.5_1_8:67876548-67926755:-|nuORF REV__ENST00000521040.5_1_8:67876548-67926755:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.52288818359375 2 461.74765 921.480748 0.027173 1.2547E-05 0.75625 0.0003492 0.78343 0.00036175 461.7478033222699 57.285 0.51553 54.085 53.817 54.333 -3.1996 24 14 2 0 0 0 0.64512 1 10684 10684 19.257 4.4187 1 1216400 + 908 22642 491 492 1140 1140 0.01686676286283273 AEFLSSTAP 9 Unmodified _AEFLSSTAP_ 0 0 0 REV__ENSG00000179270|ENST00000331664|PCARE REV__ENSG00000179270|ENST00000331664|PCARE MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5230712890625 2 461.729458 921.444362 NaN NaN NaN NaN NaN NaN NaN 93.881 1 93.881 93.381 94.381 0 0 0 0 0.18705 1 18379 18379 25.399 4.9457 1 + 909 18649 492 493 1141 1141 -0.01950200610428965 AEFLSSTAP 9 Unmodified _AEFLSSTAP_ 0 0 0 REV__ENSG00000179270|ENST00000331664|PCARE REV__ENSG00000179270|ENST00000331664|PCARE MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.54400634765625 2 461.729458 921.444362 NaN NaN NaN NaN NaN NaN NaN 97.635 1 93.538 93.038 94.038 -4.0978 0 0 0 0.037189 1 19161 19161 58.679 18.721 1 + 910 18649 492 493 1142 1142 -0.01950200610428965 AEFNPAVDG 9 Unmodified _AEFNPAVDG_ 0 0 0 REV__ENST00000460950.1_1_1:173446500-173450645:+|nuORF REV__ENST00000460950.1_1_1:173446500-173450645:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.232177734375 2 460.211432 918.408311 0.47618 0.00021914 -0.33166 -0.00015264 0.14451 6.6506E-05 460.21125317297543 31.767 0.45516 29.619 29.444 29.9 -2.1483 20 12 2 0 0 0 0.31714 1 5504 5504 30.637 3.7529 1 929030 + 911 15524 493 494 1143 1143 -0.054156577872845446 AEFNPAVDG 9 Unmodified _AEFNPAVDG_ 0 0 0 REV__ENST00000460950.1_1_1:173446500-173450645:+|nuORF REV__ENST00000460950.1_1_1:173446500-173450645:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.211432 918.408311 0.23476 0.00010804 0.22412 0.00010314 0.45889 0.00021118 460.2114094294198 31.732 0.4962 29.706 29.444 29.94 -2.0264 0.060915 0.00038026 NaN 30.637 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1257800 + 912 15524 493 494 -0.054156577872845446 AEFPARPAA 9 Unmodified _AEFPARPAA_ 0 0 0 ENST00000280333.9_1_10:128594024-128594090:+|nuORF ENST00000280333.9_1_10:128594024-128594090:+|nuORF ENST00000280333.9_1_10:128594024-128594090:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2460021972656 2 465.245609 928.476666 0.43618 0.00020293 0.20474 9.5257E-05 0.64093 0.00029819 465.24560470472466 48.315 0.77339 48.315 47.894 48.667 0 46 21 3 0 0 0 0.10083 3 9106 9057;9106;9157 55.503 19.459 1 3587400 913 8435 494 495 1144;1145;1146 1145 0.009566315832216787 AEFPARPAA 9 Unmodified _AEFPARPAA_ 0 0 0 ENST00000280333.9_1_10:128594024-128594090:+|nuORF ENST00000280333.9_1_10:128594024-128594090:+|nuORF ENST00000280333.9_1_10:128594024-128594090:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24554443359375 2 465.245609 928.476666 -0.22469 -0.00010453 0.31253 0.0001454 0.087846 4.087E-05 465.245698808685 51.345 0.76092 48.462 48.07 48.831 -2.8824 40 21 2 0 0 0 0.11219 1 9787 9787 51.63 17.527 1 2846300 914 8435 494 495 1147 1147 0.009566315832216787 AEFPARPAA 9 Unmodified _AEFPARPAA_ 0 0 0 ENST00000280333.9_1_10:128594024-128594090:+|nuORF ENST00000280333.9_1_10:128594024-128594090:+|nuORF ENST00000280333.9_1_10:128594024-128594090:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2459411621094 2 465.245609 928.476666 0.0041653 1.9379E-06 0.21099 9.8164E-05 0.21516 0.0001001 465.24562683793823 51.508 0.80326 48.463 48.084 48.888 -3.0453 42 22 2 0 0 0 0.11219 2 9448 9448;9499 51.63 16.889 1 3678000 915 8435 494 495 1148;1149 1148 0.009566315832216787 AEFPARPAA 9 Unmodified _AEFPARPAA_ 0 0 0 ENST00000280333.9_1_10:128594024-128594090:+|nuORF ENST00000280333.9_1_10:128594024-128594090:+|nuORF ENST00000280333.9_1_10:128594024-128594090:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2457580566406 2 465.245609 928.476666 -0.05889 -2.7399E-05 0.90715 0.00042205 0.84826 0.00039465 465.24564643431074 51.532 0.80581 48.481 48.027 48.833 -3.0517 62 22 4 0 0 0 0.11219 3 9474 9474;9492;9521 51.63 17.524 1 2781800 916 8435 494 495 1150;1151;1152 1150 0.009566315832216787 AEFPRLNAY 9 Unmodified _AEFPRLNAY_ 0 0 0 REV__ENSG00000115486|ENST00000233838|GGCX REV__ENSG00000115486|ENST00000233838|GGCX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.26123046875 2 540.777274 1079.53999 -0.11425 -6.1784E-05 1.3141 0.00071064 1.1999 0.00064885 541.2795773388227 110.05 1.5504 105.6 104.85 106.4 -4.4518 98 43 3 0 0 0 0.35443 1 21039 21039 28.487 1.6032 1 5997700 + 917 15433 495 496 1153 1153 0.003405723004561878 AEFPSKPV 8 Unmodified _AEFPSKPV_ 0 0 0 nc|ENSG00000087510|Q92754-2|TFAP2C;ENSG00000087510|ENST00000201031|TFAP2C nc|ENSG00000087510|Q92754-2|TFAP2C nc|ENSG00000087510|Q92754-2|TFAP2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2145690917969 2 437.737086 873.459619 0.040733 1.783E-05 -0.077362 -3.3864E-05 -0.036629 -1.6034E-05 437.736964330709 58.732 0.66731 55.481 55.032 55.699 -3.2517 24 18 2 0 0 0 0.98676 1 10905 10905 15.847 3.3156 1 566610 918 1720 496 497 1154 1154 0.01782710977431634 AEFQRQHEQLS 11 Unmodified _AEFQRQHEQLS_ 0 0 0 ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;HDAC4|p.M902Wfs*55|2|0.45|ENSG00000068024|chr2:239081127-239081127|G/-|frameshift_variant;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4;ENST00000496347.1_1_2:240108838-240158334:-|nuORF;HDAC4|p.L268Cfs*13|1|0.47|ENSG00000068024|chr2:239144646-239144646|G/-|frameshift_variant ENST00000535493.5_1_2:240016681-240219867:-|nuORF ENST00000535493.5_1_2:240016681-240219867:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2246398925781 3 458.224985 1371.65313 NaN NaN NaN NaN NaN NaN NaN 42.018 1 39.412 38.912 39.912 -2.606 0 0 0 0.22632 1 7550 7550 0.172 0 1 919 1398 497 498 1155 1155 -0.017834040442721744 AEFQRTDL 8 Unmodified _AEFQRTDL_ 0 0 0 HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1 HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26495361328125 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 62.938 1 59.681 59.181 60.181 -3.2567 0 0 0 0.064425 1 11805 11805 50.855 6.448 1 920 1827 498 499 1156 1156 -0.013039934875678227 AEFRDELVS 9 Unmodified _AEFRDELVS_ 0 0 0 REV__nc|ENSG00000270379|A2RTY3-5|HEATR9 REV__nc|ENSG00000270379|A2RTY3-5|HEATR9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2640991210938 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 57.748 1 54.838 54.338 55.338 -2.9105 0 0 0 0.23508 1 11081 11081 12.241 2.0573 1 + 921 19913 499 500 1157 1157 -0.015837416616705013 AEFRDELVS 9 Unmodified _AEFRDELVS_ 0 0 0 REV__nc|ENSG00000270379|A2RTY3-5|HEATR9 REV__nc|ENSG00000270379|A2RTY3-5|HEATR9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2647094726562 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 58.118 1 54.866 54.366 55.366 -3.2517 0 0 0 0.23277 1 10794 10794 13.906 0.39817 1 + 922 19913 499 500 1158 1158 -0.015837416616705013 AEFVEVEP 8 Unmodified _AEFVEVEP_ 0 0 0 ENSG00000100347|ENST00000350028|SAMM50 ENSG00000100347|ENST00000350028|SAMM50 ENSG00000100347|ENST00000350028|SAMM50 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2290344238281 2 460.224008 918.433463 NaN NaN NaN NaN NaN NaN NaN 49.116 1 46.11 45.61 46.61 -3.0068 0 0 0 0.2074 1 9003 9003 19.439 4.8573 1 923 1959 500 501 1159 1159 -0.029016029847070968 AEFVEVTK 8 Unmodified _AEFVEVTK_ 0 0 0 CON__P02769 CON__P02769 CON__P02769 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5419616699219 2 461.74765 921.480748 -0.21164 -9.7723E-05 0.82812 0.00038238 0.61648 0.00028466 461.7479077356285 56.975 0.59113 54.081 53.822 54.413 -2.8944 24 16 2 0 0 0 0.23568 1 10911 10911 41.956 9.6501 1 1586300 + 924 656 501 502 1160 1160 0.016866762862946416 AEFVEVTK 8 Unmodified _AEFVEVTK_ 0 0 0 CON__P02769 CON__P02769 CON__P02769 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5404357910156 2 461.74765 921.480748 0.027173 1.2547E-05 0.75625 0.0003492 0.78343 0.00036175 461.7478033222699 57.285 0.51553 54.085 53.817 54.333 -3.1996 24 14 2 0 0 0 0.12741 1 10638 10638 57.722 17.765 1 1216400 + 925 656 501 502 1161 1161 0.016866762862946416 AEFVEVTK 8 Unmodified _AEFVEVTK_ 0 0 0 CON__P02769 CON__P02769 CON__P02769 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5409240722656 2 461.74765 921.480748 0.047591 2.1975E-05 0.19434 8.9736E-05 0.24193 0.00011171 461.7477424822349 57.289 0.49898 54.113 53.858 54.357 -3.1761 23 13 2 0 0 0 0.23568 1 10676 10676 41.956 9.6501 1 1042300 + 926 656 501 502 1162 1162 0.016866762862946416 AEFVEVTK 8 Unmodified _AEFVEVTK_ 0 0 0 CON__P02769 CON__P02769 CON__P02769 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.74765 921.480748 0.14782 6.8256E-05 0.26834 0.00012391 0.41616 0.00019216 461.747611293079 54.264 0.56329 54.264 53.962 54.525 0 0.1285 -0.00018604 NaN 57.722 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1071700 + 927 656 501 502 0.016866762862946416 AEFVFLGF 8 Unmodified _AEFVFLGF_ 0 0 0 OR6N2|p.F28Lfs*107|1|0.23|ENSG00000188340|chr1:158777552-158777552|A/-|frameshift_variant;ENSG00000188340|ENST00000641131|OR6N2 OR6N2|p.F28Lfs*107|1|0.23|ENSG00000188340|chr1:158777552-158777552|A/-|frameshift_variant OR6N2|p.F28Lfs*107|1|0.23|ENSG00000188340|chr1:158777552-158777552|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2415466308594 2 465.242004 928.469455 0.043233 2.0114E-05 -2.9803 -0.0013866 -2.9371 -0.0013665 465.2414563559812 72.009 0.77524 72.009 71.49 72.266 0 38 21 3 0 0 0 8448 1 13971 13971 3.5871 2.132 1 1585100 928 7165 502 503 1163 1163 0.0023589898281670685 AEFVLLGIT 9 Unmodified _AEFVLLGIT_ 0 0 0 OR5C1|p.R24C|1|0.28|ENSG00000148215|chr9:122789002-122789002|C/T|missense_variant;ENSG00000148215|ENST00000373680|OR5C1 OR5C1|p.R24C|1|0.28|ENSG00000148215|chr9:122789002-122789002|C/T|missense_variant OR5C1|p.R24C|1|0.28|ENSG00000148215|chr9:122789002-122789002|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7814025878906 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 54.261 1 51.378 50.878 51.878 -2.8837 0 0 0 0.19652 1 10352 10352 0.073264 0 1 929 4733 503 504 1164 1164 0.06612126217078185 AEFWFALP 8 Unmodified _AEFWFALP_ 0 0 0 REV__ENST00000372398.5_1_9:132997730-132998045:+|nuORF REV__ENST00000372398.5_1_9:132997730-132998045:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2650146484375 2 490.747453 979.480354 0.49758 0.00024419 -0.98731 -0.00048452 -0.48973 -0.00024033 490.7468605764837 81.47 0.90662 81.47 81.019 81.926 0 45 25 2 0 0 0 0.50973 1 15859 15859 40.449 8.1431 1 3324600 + 930 21023 504 505 1165 1165 -0.010206986429125209 AEFWFALP 8 Unmodified _AEFWFALP_ 0 0 0 REV__ENST00000372398.5_1_9:132997730-132998045:+|nuORF REV__ENST00000372398.5_1_9:132997730-132998045:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26409912109375 2 490.747453 979.480354 0.29266 0.00014362 -1.0808 -0.00053039 -0.78812 -0.00038677 490.74689425639286 85.272 0.86711 81.362 80.944 81.812 -3.9093 42 24 2 0 0 0 0.74718 1 16258 16258 32.117 6.7177 1 3271300 + 931 21023 504 505 1166 1166 -0.010206986429125209 AEFWFALP 8 Unmodified _AEFWFALP_ 0 0 0 REV__ENST00000372398.5_1_9:132997730-132998045:+|nuORF REV__ENST00000372398.5_1_9:132997730-132998045:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2639465332031 2 490.747453 979.480354 -0.21871 -0.00010733 -0.5429 -0.00026643 -0.76161 -0.00037376 490.74709179214625 85.073 0.96079 81.361 80.942 81.903 -3.7117 52 27 3 0 0 0 0.93477 1 16306 16306 24.674 5.4169 1 3526000 + 932 21023 504 505 1167 1167 -0.010206986429125209 AEFYFYLL 8 Unmodified _AEFYFYLL_ 0 0 0 REV__ENST00000347635.8_1_22:45580993-45581113:+|nuORF REV__ENST00000347635.8_1_22:45580993-45581113:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2631225585938 2 533.268219 1064.52188 NaN NaN NaN NaN NaN NaN NaN 70.08 1 66.831 66.331 67.331 -3.2492 0 0 0 0.21323 1 13633 13633 14.582 3.7578 1 + 933 20757 505 506 1168 1168 -0.0077956267425634 AEFYGWQDTQ 10 Unmodified _AEFYGWQDTQ_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7657470703125 2 622.76456 1243.51457 NaN NaN NaN NaN NaN NaN NaN 26.808 1 25.025 24.525 25.525 -1.7821 0 0 0 0.22588 1 4744 4744 6.2058 0.9089 1 + 934 19844 506 507 1169 1169 -0.0974494701263211 AEGADLATPA 10 Unmodified _AEGADLATPA_ 0 0 0 ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000170122|ENST00000382500|FOXD4 ENSG00000204779|ENST00000377420|FOXD4L5 ENSG00000204779|ENST00000377420|FOXD4L5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.240234375 2 458.224539 914.434526 0.2852 0.00013068 -0.10842 -4.968E-05 0.17678 8.1004E-05 458.22444294543806 30.841 0.65938 30.841 30.555 31.215 0 33 18 2 0 0 0 0.40256 2 5581 5581;5609 30.637 1.555 1 1724900 935 6038 507 508 1170;1171 1170 -0.026113886158213973 AEGADLATPA 10 Unmodified _AEGADLATPA_ 0 0 0 ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000170122|ENST00000382500|FOXD4 ENSG00000204779|ENST00000377420|FOXD4L5 ENSG00000204779|ENST00000377420|FOXD4L5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.24114990234375 2 458.224539 914.434526 -0.010362 -4.7479E-06 -0.062834 -2.8792E-05 -0.073196 -3.354E-05 458.2244716194021 32.861 0.76582 30.63 30.331 31.096 -2.2305 33 21 2 0 0 0 0.59928 2 5942 5942;6057 19.257 4.4187 1 1958500 936 6038 507 508 1172;1173 1172 -0.026113886158213973 AEGADLATPA 10 Unmodified _AEGADLATPA_ 0 0 0 ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000170122|ENST00000382500|FOXD4 ENSG00000204779|ENST00000377420|FOXD4L5 ENSG00000204779|ENST00000377420|FOXD4L5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24176025390625 2 458.224539 914.434526 0.19332 8.8584E-05 -0.11242 -5.1512E-05 0.080904 3.7072E-05 458.2244050717262 32.83 0.62903 30.684 30.343 30.972 -2.1468 30 17 2 0 0 0 0.29353 1 5671 5671 37.974 1.847 1 1478300 937 6038 507 508 1174 1174 -0.026113886158213973 AEGADLATPA 10 Unmodified _AEGADLATPA_ 0 0 0 ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000170122|ENST00000382500|FOXD4 ENSG00000204779|ENST00000377420|FOXD4L5 ENSG00000204779|ENST00000377420|FOXD4L5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2243957519531 2 458.224539 914.434526 0.42607 0.00019524 -0.36783 -0.00016855 0.058242 2.6688E-05 458.22429713414226 32.841 0.62785 30.625 30.316 30.944 -2.2158 28 17 2 0 0 0 0.51199 2 5748 5660;5748 24.021 2.2739 1 808500 938 6038 507 508 1175;1176 1176 -0.026113886158213973 AEGAEFVAY 9 Unmodified _AEGAEFVAY_ 0 0 0 REV__ENST00000451644.5_1_2:12147350-12246954:+|nuORF REV__ENST00000451644.5_1_2:12147350-12246954:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7237243652344 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 107.91 1 107.91 107.41 108.41 0 0 0 0 0.22251 1 21219 21219 16.942 2.3606 1 + 939 21808 508 509 1177 1177 -0.050784871274800025 AEGAELGRL 9 Unmodified _AEGAELGRL_ 0 0 0 REV__ENST00000263377.6_1_19:15348671-15349019:-|nuORF REV__ENST00000263377.6_1_19:15348671-15349019:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2416687011719 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 33.171 1 30.955 30.455 31.455 -2.2158 0 0 0 0.21469 1 5771 5771 19.257 2.3147 1 + 940 20212 509 510 1178 1178 0.021483103750597365 AEGAGRAQR 9 Unmodified _AEGAGRAQR_ 0 0 0 ENST00000254770.2_1_7:55433273-55433429:+|nuORF ENST00000254770.2_1_7:55433273-55433429:+|nuORF ENST00000254770.2_1_7:55433273-55433429:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24029541015625 2 458.24139 914.468226 NaN NaN NaN NaN NaN NaN NaN 42.98 1 40.329 39.829 40.829 -2.651 0 0 0 0.18705 1 7749 7749 25.399 3.6527 1 941 8246 510 511 1179 1179 0.0075707766660571 AEGAIHEVKA 10 Unmodified _AEGAIHEVKA_ 0 0 0 nc|ENSG00000168334|Q702N8-2|XIRP1;XIRP1|p.W1135Gfs*2|1|0.26|ENSG00000168334|chr3:39186044-39186044|C/-|frameshift_variant;XIRP1|p.G1198Afs*29|1|0.11|ENSG00000168334|chr3:39185853-39185853|C/-|frameshift_variant;ENSG00000168334|ENST00000340369|XIRP1;XIRP1|p.F441Lfs*39|1|0.24|ENSG00000168334|chr3:39188123-39188123|A/-|frameshift_variant nc|ENSG00000168334|Q702N8-2|XIRP1 nc|ENSG00000168334|Q702N8-2|XIRP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.2120056152344 3 342.185579 1023.53491 -0.93196 -0.0003189 0.89465 0.00030614 -0.037312 -1.2767E-05 342.1858331226761 14.25 0.5596 13.136 12.839 13.399 -1.1142 32 15 4 0 0 0 1.1313 1 2075 2075 3.8763 0.59502 1 629310 942 5898 511 512 1180 1180 0.024082684378413433 AEGAIHEVKA 10 Unmodified _AEGAIHEVKA_ 0 0 0 nc|ENSG00000168334|Q702N8-2|XIRP1;XIRP1|p.W1135Gfs*2|1|0.26|ENSG00000168334|chr3:39186044-39186044|C/-|frameshift_variant;XIRP1|p.G1198Afs*29|1|0.11|ENSG00000168334|chr3:39185853-39185853|C/-|frameshift_variant;ENSG00000168334|ENST00000340369|XIRP1;XIRP1|p.F441Lfs*39|1|0.24|ENSG00000168334|chr3:39188123-39188123|A/-|frameshift_variant nc|ENSG00000168334|Q702N8-2|XIRP1 nc|ENSG00000168334|Q702N8-2|XIRP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 342.185579 1023.53491 -0.48873 -0.00016724 0.51062 0.00017473 0.021892 7.4911E-06 342.1856843399466 13.524 0.44676 13.524 13.238 13.685 0 0.19401 -0.00015507 NaN 3.8763 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 582400 943 5898 511 512 0.024082684378413433 AEGAIYHL 8 Unmodified _AEGAIYHL_ 0 0 0 ENSG00000132429|ENST00000254765|POPDC3;POPDC3|p.S232Qfs*3|1|0.22|ENSG00000132429|chr6:105158652-105158652|A/-|frameshift_variant;ENST00000489134.5_1_6:105607679-105609814:-|nuORF ENSG00000132429|ENST00000254765|POPDC3 ENSG00000132429|ENST00000254765|POPDC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22479248046875 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 57.177 1 54.001 53.501 54.501 -3.1761 0 0 0 0.2074 1 10652 10652 19.439 2.3524 1 944 3723 512 513 1181 1181 -0.0021045968237558554 AEGAKYIDL 9 Unmodified _AEGAKYIDL_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2586975097656 2 490.258382 978.502212 -0.21504 -0.00010543 0.48031 0.00023547 0.26527 0.00013005 490.2586139633814 38.565 0.38952 36.016 35.802 36.192 -2.5491 22 10 3 0 0 0 0.15214 1 7142 7142 43.858 1.9027 1 2560300 + + 945 13532 513 514 1182 1182 0.012100613149868877 AEGAKYIDL 9 Unmodified _AEGAKYIDL_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2586669921875 2 490.258382 978.502212 0.14639 7.1771E-05 0.074131 3.6343E-05 0.22052 0.00010811 490.2583593057579 38.477 0.49027 36.035 35.704 36.195 -2.4419 25 13 3 0 0 0 0.15214 1 6836 6836 43.858 1.9027 1 2587100 + + 946 13532 513 514 1183 1183 0.012100613149868877 AEGAKYIDL 9 Unmodified _AEGAKYIDL_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2583312988281 2 490.258382 978.502212 -0.056015 -2.7462E-05 0.35437 0.00017373 0.29835 0.00014627 490.2584758986829 38.384 0.42171 35.979 35.809 36.231 -2.4049 25 11 3 0 0 0 0.15214 1 6827 6827 43.858 1.9027 1 1807900 + + 947 13532 513 514 1184 1184 0.012100613149868877 AEGAKYIDL 9 Unmodified _AEGAKYIDL_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 490.258382 978.502212 0.22479 0.00011021 0.27142 0.00013306 0.49621 0.00024327 490.2583196998363 36.158 0.42814 36.158 35.925 36.353 0 0.11135 -1.947E-05 NaN 43.858 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2811200 + + 948 13532 513 514 0.012100613149868877 AEGAKYIDL 9 Unmodified _AEGAKYIDL_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.258382 978.502212 0.14639 7.1771E-05 0.074131 3.6343E-05 0.22052 0.00010811 490.2583593057579 38.477 0.49027 36.035 35.704 36.195 -2.4419 -0.012127 -0.00021291 NaN 43.858 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2587100 + + 949 13532 513 514 0.012100613149868877 AEGAKYIDL 9 Unmodified _AEGAKYIDL_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 490.258382 978.502212 -0.056015 -2.7462E-05 0.35437 0.00017373 0.29835 0.00014627 490.2584758986829 38.384 0.42171 35.979 35.809 36.231 -2.4049 -0.067658 6.1865E-05 NaN 43.858 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1807900 + + 950 13532 513 514 0.012100613149868877 AEGALHHHPL 10 Unmodified _AEGALHHHPL_ 0 0 0 WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2805786132812 2 541.280515 1080.54648 NaN NaN NaN NaN NaN NaN NaN 31.695 1 29.546 29.046 30.046 -2.1483 0 0 0 0.22576 1 5468 5468 14.838 0.93222 1 951 26574 514 515 1185 1185 0.009425102518434869 AEGAPAPLPH 10 Unmodified _AEGAPAPLPH_ 0 0 0 REV__ENSG00000112297|ENST00000633556|CRYBG1 REV__ENSG00000112297|ENST00000633556|CRYBG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2542419433594 2 480.250892 958.48723 -0.32752 -0.00015729 0.3194 0.00015339 -0.0081217 -3.9004E-06 480.25116058977056 58.688 0.89688 58.688 58.279 59.176 0 59 25 3 0 0 0 0.57735 1 11222 11222 20.454 3.5113 1 4176100 + 952 15292 515 516 1186 1186 0.006326142376565258 AEGAPAPLPH 10 Unmodified _AEGAPAPLPH_ 0 0 0 REV__ENSG00000112297|ENST00000633556|CRYBG1 REV__ENSG00000112297|ENST00000633556|CRYBG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25274658203125 2 480.250892 958.48723 0.13956 6.7023E-05 -0.71457 -0.00034317 -0.57501 -0.00027615 480.25077959478546 61.967 0.8824 58.598 58.149 59.032 -3.3694 59 24 3 0 0 0 0.57735 2 11538 11538;11556 20.454 5.8719 1 3692700 + 953 15292 515 516 1187;1188 1187 0.006326142376565258 AEGAPAPLPH 10 Unmodified _AEGAPAPLPH_ 0 0 0 REV__ENSG00000112297|ENST00000633556|CRYBG1 REV__ENSG00000112297|ENST00000633556|CRYBG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2528381347656 2 480.250892 958.48723 0.15756 7.5669E-05 -0.45829 -0.00022009 -0.30073 -0.00014443 480.25080993018423 61.838 0.79544 58.598 58.206 59.002 -3.2395 57 22 3 0 0 0 0.57735 2 11543 11543;11587 20.454 5.8719 1 4328600 + 954 15292 515 516 1189;1190 1189 0.006326142376565258 AEGAPQVEA 9 Unmodified _AEGAPQVEA_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 873.382568359375 1 871.415588 870.408311 0.50106 0.00043663 0.0015681 1.3664E-06 0.50262 0.00043799 871.4155651180631 34.438 0.74792 34.438 34.108 34.856 0 54 21 3 0 0 0 0.54076 1 6304 6304 17.113 4.5813 1 6713000 955 367 516 517 1191 1191 -0.03207657787288554 AEGAPQVEA 9 Unmodified _AEGAPQVEA_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2144775390625 2 436.211432 870.408311 0.1538 6.7089E-05 0.043342 1.8906E-05 0.19714 8.5996E-05 436.21142789128584 34.467 0.85235 34.467 34.073 34.925 0 56 24 3 0 0 0 0.55539 1 6324 6324 16.149 2.6412 1 9088600 956 367 516 517 1192 1192 -0.03207657787288554 AEGAPQVEA 9 Unmodified _AEGAPQVEA_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21453857421875 2 436.211432 870.408311 -0.54603 -0.00023818 0.66575 0.00029041 0.11973 5.2225E-05 436.2116950450911 36.81 0.9372 34.341 33.904 34.841 -2.4688 64 26 4 0 0 0 0.46882 1 6804 6804 21.537 4.5947 1 10610000 957 367 516 517 1193 1193 -0.03207657787288554 AEGAPQVEA 9 Unmodified _AEGAPQVEA_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.214599609375 2 436.211432 870.408311 0.071782 3.1312E-05 0.10369 4.5231E-05 0.17547 7.6543E-05 436.21144441786925 36.777 1.1266 34.429 34.006 35.132 -2.3479 73 32 4 0 0 0 0.60061 1 6545 6545 13.042 2.2185 1 10089000 958 367 516 517 1194 1194 -0.03207657787288554 AEGAPQVEA 9 Unmodified _AEGAPQVEA_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 871.415588 870.408311 -0.10968 -9.5576E-05 0.63322 0.0005518 0.52354 0.00045622 871.4160915847177 36.766 0.9377 34.298 33.869 34.806 -2.4688 -0.094078 0.0003912 NaN 17.113 60 26 3 NaN NaN NaN NaN 0 NaN NaN 0 6897000 959 367 516 517 -0.03207657787288554 AEGAPQVEA 9 Unmodified _AEGAPQVEA_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 871.415588 870.408311 0.34466 0.00030034 0.13258 0.00011553 0.47723 0.00041587 871.4156613932108 36.744 0.88248 34.396 34.04 34.923 -2.3479 0.0047792 -4.5068E-05 NaN 17.113 57 25 3 NaN NaN NaN NaN 0 NaN NaN 0 8281300 960 367 516 517 -0.03207657787288554 AEGAPQVEA 9 Unmodified _AEGAPQVEA_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 871.415588 870.408311 0.41507 0.00036169 0.0045266 3.9445E-06 0.41959 0.00036564 871.4155892614424 36.772 0.91848 34.435 34.027 34.946 -2.3375 0.043325 -0.00015665 NaN 17.113 62 25 3 NaN NaN NaN NaN 0 NaN NaN 0 7536100 961 367 516 517 -0.03207657787288554 AEGAPQVEA 9 Unmodified _AEGAPQVEA_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 436.211432 870.408311 0.072742 3.1731E-05 0.16342 7.1286E-05 0.23616 0.00010302 436.21147350202693 36.776 0.85037 34.438 34.061 34.911 -2.3375 0.019558 -7.9208E-05 NaN 21.537 43 23 2 NaN NaN NaN NaN 0 NaN NaN 0 4043500 962 367 516 517 -0.03207657787288554 AEGARFICL 9 Unmodified _AEGARFICL_ 0 0 0 ENST00000546954.1_1_12:120881792-120882053:-|nuORF ENST00000546954.1_1_12:120881792-120882053:-|nuORF ENST00000546954.1_1_12:120881792-120882053:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2548522949219 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 122.72 1 118.17 117.67 118.67 -4.5476 0 0 0 0.22251 1 24194 24194 16.942 0 1 963 11137 517 518 1195 1195 0.005578448826213389 AEGARIAASA 10 Unmodified _AEGARIAASA_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant;LAMA5|p.A3459Qfs*25|1|0.42|ENSG00000130702|chr20:62310736-62310736|C/-|frameshift_variant;LAMA5|p.L2137Afs*29|1|0.31|ENSG00000130702|chr20:62322110-62322111|-/G|frameshift_variant;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5;LAMA5|p.L1522Wfs*35|1|0.42|ENSG00000130702|chr20:62328329-62328329|G/-|frameshift_variant;LAMA5|p.R1573Afs*84|1|0.4|ENSG00000130702|chr20:62327946-62327946|G/-|frameshift_variant ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2339782714844 2 458.745973 915.477394 0.037582 1.7241E-05 0.62858 0.00028836 0.66617 0.0003056 458.74645254650676 25.583 0.47713 23.948 23.685 24.162 -1.6347 22 13 2 0 0 0 0.2423 1 4184 4184 53.317 18.385 1 1340000 964 3627 518 519 1196 1196 0.016274262322781397 AEGARIAASA 10 Unmodified _AEGARIAASA_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant;LAMA5|p.A3459Qfs*25|1|0.42|ENSG00000130702|chr20:62310736-62310736|C/-|frameshift_variant;LAMA5|p.L2137Afs*29|1|0.31|ENSG00000130702|chr20:62322110-62322111|-/G|frameshift_variant;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5;LAMA5|p.L1522Wfs*35|1|0.42|ENSG00000130702|chr20:62328329-62328329|G/-|frameshift_variant;LAMA5|p.R1573Afs*84|1|0.4|ENSG00000130702|chr20:62327946-62327946|G/-|frameshift_variant ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.745973 915.477394 0.28532 0.00013089 -0.031426 -1.4416E-05 0.25389 0.00011647 458.74598569023067 24.124 0.47497 24.124 23.827 24.302 0 0.098006 1.8792E-05 NaN 53.317 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2512400 965 3627 518 519 0.016274262322781397 AEGARIAASA 10 Unmodified _AEGARIAASA_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant;LAMA5|p.A3459Qfs*25|1|0.42|ENSG00000130702|chr20:62310736-62310736|C/-|frameshift_variant;LAMA5|p.L2137Afs*29|1|0.31|ENSG00000130702|chr20:62322110-62322111|-/G|frameshift_variant;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5;LAMA5|p.L1522Wfs*35|1|0.42|ENSG00000130702|chr20:62328329-62328329|G/-|frameshift_variant;LAMA5|p.R1573Afs*84|1|0.4|ENSG00000130702|chr20:62327946-62327946|G/-|frameshift_variant ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.745973 915.477394 1.0969 0.00050319 -0.46605 -0.0002138 0.63084 0.0002894 458.74570081317364 25.655 0.44798 24.006 23.757 24.205 -1.6482 -0.019898 -0.00037997 NaN 53.317 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1526300 966 3627 518 519 0.016274262322781397 AEGAVRTLP 9 Unmodified _AEGAVRTLP_ 0 0 0 REV__ENST00000393640.8_1_16:70432690-70432861:-|nuORF REV__ENST00000393640.8_1_16:70432690-70432861:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22686767578125 2 457.258717 912.50288 0.71842 0.0003285 -0.72132 -0.00032983 -0.0028999 -1.326E-06 457.2584451693532 79.394 0.51816 79.394 79.097 79.616 0 38 14 3 0 0 0 0.63326 1 15398 15398 15.847 2.3393 1 1679600 + 967 21239 519 520 1197 1197 0.04312900754723614 AEGAWGLGVA 10 Unmodified _AEGAWGLGVA_ 0 0 0 REV__ENST00000436636.6_1_3:171177942-171178068:-|nuORF REV__ENST00000436636.6_1_3:171177942-171178068:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2504577636719 2 465.737617 929.460681 -0.18999 -8.8485E-05 0.3508 0.00016338 0.16081 7.4896E-05 465.7374212724101 61.142 0.4864 61.142 60.874 61.36 0 21 13 2 0 0 0 0.79872 1 11748 11748 25.399 7.2643 1 917720 + 968 21673 520 521 1198 1198 -0.0068707465366060205 AEGAWGLGVA 10 Unmodified _AEGAWGLGVA_ 0 0 0 REV__ENST00000436636.6_1_3:171177942-171178068:-|nuORF REV__ENST00000436636.6_1_3:171177942-171178068:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2414245605469 2 465.737617 929.460681 -0.015736 -7.3287E-06 -0.079848 -3.7188E-05 -0.095584 -4.4517E-05 465.73742731586765 63.996 0.52835 60.998 60.625 61.153 -2.9975 23 14 2 0 0 0 0.79872 1 12369 12369 25.399 17.489 1 1387600 + 969 21673 520 521 1199 1199 -0.0068707465366060205 AEGCDNEEDL 10 Unmodified _AEGCDNEEDL_ 0 0 0 ENST00000461963.1_1_7:106826910-106836281:+|nuORF;nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1 ENST00000461963.1_1_7:106826910-106836281:+|nuORF ENST00000461963.1_1_7:106826910-106836281:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7781982421875 2 547.700768 1093.38698 0.62045 0.00033982 -0.10787 -5.9082E-05 0.51258 0.00028074 548.2037517562521 120.1 0.17715 115.45 115.31 115.49 -4.645 6 4 2 0 0 0 0.89521 1 23035 23035 6.7232 0 1 505400 970 2350 521 522 1200 1200 -0.15597455668967086 AEGCGKSFY 9 Unmodified _AEGCGKSFY_ 0 0 0 ENST00000412490.7_1_14:74358863-74376162:+|nuORF;nc|ENSG00000119725|Q86VK4-4|ZNF410;nc|ENSG00000119725|Q86VK4-3|ZNF410;ZNF410|p.L434Sfs*8|1|0.04|ENSG00000119725|chr14:73923423-73923424|-/TCTATTT|frameshift_variant;ENSG00000119725|ENST00000555044|ZNF410;nc|ENSG00000119725|Q86VK4-5|ZNF410 ENST00000412490.7_1_14:74358863-74376162:+|nuORF ENST00000412490.7_1_14:74358863-74376162:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2401428222656 2 481.207835 960.401117 NaN NaN NaN NaN NaN NaN NaN 45.884 1 43.043 42.543 43.543 -2.8409 0 0 0 0.23508 1 8653 8653 12.532 1.7076 1 971 3099 522 523 1201 1201 -0.08066713659366087 AEGCSMLY 8 Unmodified _AEGCSMLY_ 0 0 0 tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1 tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1 tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2315979003906 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 56.578 1 53.684 53.184 54.184 -2.8944 0 0 0 0.21323 1 10844 10844 14.582 1.0738 1 972 26378 523 524 1202 1202 -0.10045147314087899 AEGDAPELP 9 Unmodified _AEGDAPELP_ 0 0 0 TLR10|p.A753Hfs*28|1|0.31|ENSG00000174123|chr4:38773335-38773335|T/-|frameshift_variant;ENSG00000174123|ENST00000308973|TLR10 TLR10|p.A753Hfs*28|1|0.31|ENSG00000174123|chr4:38773335-38773335|T/-|frameshift_variant TLR10|p.A753Hfs*28|1|0.31|ENSG00000174123|chr4:38773335-38773335|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.11279296875 2 449.711265 897.407977 0.23762 0.00010686 0.086686 3.8984E-05 0.32431 0.00014584 449.7112046566776 28.349 0.97451 26.352 25.822 26.797 -1.9962 38 27 2 0 0 0 0.60805 1 4763 4763 12.532 3.1841 1 373990 973 6329 524 525 1203 1203 -0.04483077507143207 AEGDAPELP 9 Unmodified _AEGDAPELP_ 0 0 0 TLR10|p.A753Hfs*28|1|0.31|ENSG00000174123|chr4:38773335-38773335|T/-|frameshift_variant;ENSG00000174123|ENST00000308973|TLR10 TLR10|p.A753Hfs*28|1|0.31|ENSG00000174123|chr4:38773335-38773335|T/-|frameshift_variant TLR10|p.A753Hfs*28|1|0.31|ENSG00000174123|chr4:38773335-38773335|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.711265 897.407977 0.2094 9.4171E-05 -0.030569 -1.3747E-05 0.17883 8.0424E-05 449.71126658563867 28.286 1.0482 26.531 25.757 26.805 -1.7552 0.089248 -4.9626E-05 NaN 12.532 38 29 2 NaN NaN NaN NaN 0 NaN NaN 0 655850 974 6329 524 525 -0.04483077507143207 AEGDCGEG 8 Unmodified _AEGDCGEG_ 0 0 0 ENST00000469410.1_1_7:150725843-150729979:+|nuORF ENST00000469410.1_1_7:150725843-150729979:+|nuORF ENST00000469410.1_1_7:150725843-150729979:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 369.22052001953125 2 369.123968 736.233383 NaN NaN NaN NaN NaN NaN NaN 56.669 1 53.48 52.98 53.98 -3.1895 0 0 0 0.2343 1 10509 10509 0.063987 0 1 975 10179 525 526 1204 1204 -0.14528400923961726 AEGDISNVA 9 Unmodified _AEGDISNVA_ 0 0 0 ENST00000483549.5_1_22:46114317-46136469:+|nuORF;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10 ENST00000483549.5_1_22:46114317-46136469:+|nuORF ENST00000483549.5_1_22:46114317-46136469:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 876.413818359375 1 875.410502 874.403226 0.129 0.00011292 0.37392 0.00032733 0.50291 0.00044026 875.4107920291941 41.794 1.2906 39.159 38.745 40.036 -2.6348 86 36 3 0 0 0 0.38188 1 7936 7936 26.884 9.9414 1 12017000 976 278 526 527 1205 1205 -0.03899961649904071 AEGDISNVA 9 Unmodified _AEGDISNVA_ 0 0 0 ENST00000483549.5_1_22:46114317-46136469:+|nuORF;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10 ENST00000483549.5_1_22:46114317-46136469:+|nuORF ENST00000483549.5_1_22:46114317-46136469:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 875.410502 874.403226 0.64171 0.00056176 -0.24807 -0.00021717 0.39363 0.00034459 875.4102525160887 39.42 1.1752 39.42 38.891 40.066 0 0.20324 -0.00034657 NaN 26.884 82 33 3 NaN NaN NaN NaN 0 NaN NaN 0 6889800 977 278 526 527 -0.03899961649904071 AEGDISNVA 9 Unmodified _AEGDISNVA_ 0 0 0 ENST00000483549.5_1_22:46114317-46136469:+|nuORF;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10 ENST00000483549.5_1_22:46114317-46136469:+|nuORF ENST00000483549.5_1_22:46114317-46136469:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 875.410502 874.403226 0.17599 0.00015406 0.27115 0.00023737 0.44714 0.00039143 875.410701434431 41.739 1.4078 39.088 38.72 40.128 -2.651 -0.12795 0.00010796 NaN 26.884 92 39 3 NaN NaN NaN NaN 0 NaN NaN 0 10000000 978 278 526 527 -0.03899961649904071 AEGDISNVA 9 Unmodified _AEGDISNVA_ 0 0 0 ENST00000483549.5_1_22:46114317-46136469:+|nuORF;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10 ENST00000483549.5_1_22:46114317-46136469:+|nuORF ENST00000483549.5_1_22:46114317-46136469:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 875.410502 874.403226 0.18118 0.00015861 0.19908 0.00017427 0.38026 0.00033288 875.4106350982612 41.804 1.5443 39.198 38.737 40.281 -2.606 -0.01797 4.4867E-05 NaN 26.884 106 43 3 NaN NaN NaN NaN 0 NaN NaN 0 7536200 979 278 526 527 -0.03899961649904071 AEGEARPLS 9 Unmodified _AEGEARPLS_ 0 0 0 REV__ENST00000479095.1_1_9:4679767-4685161:+|nuORF REV__ENST00000479095.1_1_9:4679767-4685161:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.237548828125 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 25.374 1 23.84 23.34 24.34 -1.5342 0 0 0 0.22193 1 4169 4169 17.113 1.8644 1 + 980 13340 527 528 1206 1206 -0.005682800046201919 AEGEAVRTP 9 Unmodified _AEGEAVRTP_ 0 0 0 MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;MTDH|p.G265Efs*11|1|0.27|ENSG00000147649|chr8:97689081-97689081|A/-|frameshift_variant;MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.237060546875 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 25.169 1 23.634 23.134 24.134 -1.5342 0 0 0 0.21768 1 4125 4125 18.373 1.2602 1 981 4713 528 529 1207 1207 -0.005682800046201919 AEGEDFVY 8 Unmodified _AEGEDFVY_ 0 0 0 REV__ENSG00000182836|ENST00000377801|PLCXD3 REV__ENSG00000182836|ENST00000377801|PLCXD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2398681640625 2 465.19799 928.381428 0.28648 0.00013327 -0.1447 -6.7315E-05 0.14178 6.5954E-05 465.1978874734139 36.126 0.77555 33.85 33.56 34.336 -2.2766 45 21 3 0 0 0 0.89552 1 6368 6368 19.439 0 1 2398500 + 982 18803 529 530 1208 1208 -0.08562766398472377 AEGELVQSP 9 Unmodified _AEGELVQSP_ 0 0 0 REV__ITGA7|p.R581Qfs*8|1|0.09|ENSG00000135424|chr12:55697026-55697027|-/TT|frameshift_variant REV__ITGA7|p.R581Qfs*8|1|0.09|ENSG00000135424|chr12:55697026-55697027|-/TT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2535705566406 2 465.232364 928.450176 -0.034521 -1.606E-05 -0.41817 -0.00019455 -0.45269 -0.00021061 465.23211964998313 78.997 0.98419 75.487 75.029 76.013 -3.5102 52 27 3 0 0 0 0.19983 1 15490 15490 1.6919 1.5641 1 3493500 + 983 16268 530 531 1209 1209 -0.01691102098754982 AEGELVQSP 9 Unmodified _AEGELVQSP_ 0 0 0 REV__ITGA7|p.R581Qfs*8|1|0.09|ENSG00000135424|chr12:55697026-55697027|-/TT|frameshift_variant REV__ITGA7|p.R581Qfs*8|1|0.09|ENSG00000135424|chr12:55697026-55697027|-/TT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2480163574219 2 465.232364 928.450176 -0.074501 -3.466E-05 -0.13251 -6.1648E-05 -0.20701 -9.6309E-05 465.2322192041717 79.25 1.0153 75.574 75.096 76.111 -3.676 48 28 3 0 0 0 0.064067 1 15100 15100 11.749 0 1 1633000 + 984 16268 530 531 1210 1210 -0.01691102098754982 AEGENSIAK 9 Unmodified _AEGENSIAK_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353515625 2 459.729989 917.445425 -0.072714 -3.3429E-05 1.9598 0.00090099 1.8871 0.00086756 459.7301495691557 40.705 0.94946 38.165 37.78 38.73 -2.5398 43 26 2 0 0 0 0.31714 2 7244 7223;7244 30.637 5.9627 1 2320200 985 4896 531 532 1211;1212 1212 -0.01659986241520528 AEGERQPPP 9 Unmodified _AEGERQPPP_ 0 0 0 ENST00000414331.5_1_9:131873765-131885338:+|nuORF;nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA ENST00000414331.5_1_9:131873765-131885338:+|nuORF ENST00000414331.5_1_9:131873765-131885338:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2580871582031 2 490.743431 979.472308 -0.082117 -4.0299E-05 0.57261 0.000281 0.49049 0.00024071 490.7436615931561 21.569 0.62881 20.184 20.002 20.631 -1.3847 26 17 2 0 0 0 0.79204 1 3372 3372 16.942 6.1184 1 313130 986 3072 532 533 1213 1213 -0.01824877630338051 AEGERQPPP 9 Unmodified _AEGERQPPP_ 0 0 0 ENST00000414331.5_1_9:131873765-131885338:+|nuORF;nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA ENST00000414331.5_1_9:131873765-131885338:+|nuORF ENST00000414331.5_1_9:131873765-131885338:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2577819824219 2 490.743431 979.472308 -0.86831 -0.00042612 0.75141 0.00036875 -0.11689 -5.7365E-05 490.7438693692151 22.043 0.69001 20.322 19.951 20.641 -1.7211 24 19 2 0 0 0 0.86532 1 3402 3402 8.5933 3.3626 1 328890 987 3072 532 533 1214 1214 -0.01824877630338051 AEGEVGLAVA 10 Unmodified _AEGEVGLAVA_ 0 0 0 REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2242736816406 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 51.24 1 48.358 47.858 48.858 -2.8824 0 0 0 0.12557 1 9735 9735 52.268 14.294 1 + 988 16458 533 534 1215 1215 0.010254882809022092 AEGEVGLAVA 10 Unmodified _AEGEVGLAVA_ 0 0 0 REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2393493652344 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 51.431 1 48.379 47.879 48.879 -3.0517 0 0 0 0.14213 1 9476 9476 37.974 0 1 + 989 16458 533 534 1216 1216 0.010254882809022092 AEGFLFVF 8 Unmodified _AEGFLFVF_ 0 0 0 ENSG00000261609|ENST00000648994|GAN ENSG00000261609|ENST00000648994|GAN ENSG00000261609|ENST00000648994|GAN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2498474121094 2 465.242004 928.469455 0.043233 2.0114E-05 -2.9803 -0.0013866 -2.9371 -0.0013665 465.2414563559812 72.009 0.77524 72.009 71.49 72.266 0 38 21 3 0 0 0 8448 1 14007 14007 0.68139 0 1 1585100 990 7961 534 535 1217 1217 0.0023589898280533816 AEGFLFVF 8 Unmodified _AEGFLFVF_ 0 0 0 ENSG00000261609|ENST00000648994|GAN ENSG00000261609|ENST00000648994|GAN ENSG00000261609|ENST00000648994|GAN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.240966796875 2 465.242004 928.469455 NaN NaN NaN NaN NaN NaN NaN 64.431 1 60.973 60.473 61.473 -3.4581 0 0 0 0.22934 1 12052 12052 1.7423 0.52744 1 991 7961 534 535 1218 1218 0.0023589898280533816 AEGGDADD 8 Unmodified _AEGGDADD_ 0 0 0 ATP2B2|p.V435Sfs*14|1|0.34|ENSG00000157087|chr3:10375544-10375544|G/-|frameshift_variant;ATP2B2|p.M474Nfs*15|1|0.52|ENSG00000157087|chr3:10372047-10372048|-/T|frameshift_variant;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2 ATP2B2|p.V435Sfs*14|1|0.34|ENSG00000157087|chr3:10375544-10375544|G/-|frameshift_variant ATP2B2|p.V435Sfs*14|1|0.34|ENSG00000157087|chr3:10375544-10375544|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.1313171386719 2 375.132847 748.251142 NaN NaN NaN NaN NaN NaN NaN 68.192 1 64.656 64.156 65.156 -3.5362 0 0 0 0.23749 1 12810 12810 0.0082765 0 1 992 268 535 536 1219 1219 -0.1330536239746607 AEGGDGDG 8 Unmodified _AEGGDGDG_ 0 0 0 ENSG00000179168|ENST00000334928|GGN;GGN|p.A569Pfs*47|1|0.5|ENSG00000179168|chr19:38385557-38385557|C/-|frameshift_variant;nc|ENSG00000179168|Q86UU5-2|GGN ENSG00000179168|ENST00000334928|GGN ENSG00000179168|ENST00000334928|GGN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.1545104980469 2 339.122283 676.230013 NaN NaN NaN NaN NaN NaN NaN 53.568 1 53.568 53.068 54.068 0 0 0 0 0.23749 1 10205 10205 0.0082765 0 1 993 6618 536 537 1220 1220 -0.12105327706308344 AEGGVSSI 8 Unmodified _AEGGVSSI_ 0 0 0 REV__nc|ENSG00000080910|P36980-2|CFHR2 REV__nc|ENSG00000080910|P36980-2|CFHR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2069091796875 2 360.182143 718.349734 NaN NaN NaN NaN NaN NaN NaN 19.579 1 17.944 17.444 18.444 -1.6351 0 0 0 0.23664 1 2963 2963 3.8459 0 1 + 994 14421 537 538 1221 1221 -0.020707143617642032 AEGHPAPLG 9 Unmodified _AEGHPAPLG_ 0 0 0 nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7 nc|ENSG00000061273|Q8WUI4-10|HDAC7 nc|ENSG00000061273|Q8WUI4-10|HDAC7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.254638671875 2 424.716685 847.418816 0.33744 0.00014332 -0.35133 -0.00014921 -0.013886 -5.8978E-06 424.71655743803535 49.45 0.73432 49.45 49.09 49.825 0 31 20 2 0 0 0 0.59384 1 9391 9391 13.508 4.1604 1 1370700 995 1314 538 539 1222 1222 -0.010996303421961784 AEGHPAPLG 9 Unmodified _AEGHPAPLG_ 0 0 0 nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7 nc|ENSG00000061273|Q8WUI4-10|HDAC7 nc|ENSG00000061273|Q8WUI4-10|HDAC7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 424.716685 847.418816 -0.34268 -0.00014554 0.18364 7.7994E-05 -0.15904 -6.7546E-05 424.71683490779736 52.403 0.65607 49.521 49.136 49.793 -2.8824 0.050646 0.00020197 NaN 13.508 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2608700 996 1314 538 539 -0.010996303421961784 AEGHPAPLG 9 Unmodified _AEGHPAPLG_ 0 0 0 nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7 nc|ENSG00000061273|Q8WUI4-10|HDAC7 nc|ENSG00000061273|Q8WUI4-10|HDAC7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 424.716685 847.418816 0.018177 7.7199E-06 -0.23644 -0.00010042 -0.21826 -9.2699E-05 424.7166783610608 52.531 0.66264 49.444 49.099 49.761 -3.0876 -0.026555 -0.00015485 NaN 13.508 34 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2450900 997 1314 538 539 -0.010996303421961784 AEGHPAPLG 9 Unmodified _AEGHPAPLG_ 0 0 0 nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7 nc|ENSG00000061273|Q8WUI4-10|HDAC7 nc|ENSG00000061273|Q8WUI4-10|HDAC7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 424.716685 847.418816 -0.32983 -0.00014008 0.13165 5.5914E-05 -0.19818 -8.4171E-05 424.7167504726974 52.562 0.66538 49.467 49.094 49.76 -3.0954 -0.0036237 0.00015781 NaN 13.508 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1933400 998 1314 538 539 -0.010996303421961784 AEGHPAPQI 9 Unmodified _AEGHPAPQI_ 0 0 0 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2353210449219 2 460.235242 918.45593 0.26555 0.00012222 0.16664 7.6693E-05 0.43219 0.00019891 460.23519723364535 36.419 0.67403 36.419 36.177 36.851 0 33 18 3 0 0 0 0.029716 3 6732 6732;6747;6749 81.89 40.051 1 1735700 999 7498 539 540 1223;1224;1225 1223 -0.006559587964375169 AEGHPAPQI 9 Unmodified _AEGHPAPQI_ 0 0 0 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2353210449219 2 460.235242 918.45593 -0.39585 -0.00018218 0.56778 0.00026131 0.17193 7.9128E-05 460.23543543552967 38.878 0.66771 36.329 36.013 36.681 -2.5491 42 18 3 0 0 0 3.738E-05 5 7237 7175;7190;7236;7237;7251 131.27 63.187 1 3485400 1000 7498 539 540 1226;1227;1228;1229;1230 1229 -0.006559587964375169 AEGHPAPQI 9 Unmodified _AEGHPAPQI_ 0 0 0 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23529052734375 2 460.235242 918.45593 -0.0059304 -2.7294E-06 0.13075 6.0175E-05 0.12482 5.7445E-05 460.2353335634574 38.797 0.66733 36.355 36.054 36.721 -2.4419 42 18 3 0 0 0 3.738E-05 3 6905 6854;6905;6954 131.27 63.187 1 2217700 1001 7498 539 540 1231;1232;1233 1232 -0.006559587964375169 AEGHPAPQI 9 Unmodified _AEGHPAPQI_ 0 0 0 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2319641113281 2 460.235242 918.45593 0.16597 7.6386E-05 0.032699 1.5049E-05 0.19867 9.1435E-05 460.2353299272901 38.729 0.70168 36.324 36.021 36.723 -2.4049 38 19 3 0 0 0 0.31714 1 6860 6860 30.637 12.49 1 2139400 1002 7498 539 540 1234 1234 -0.006559587964375169 AEGHPKSLF 9 Unmodified _AEGHPKSLF_ 0 0 0 ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34 ENST00000495224.1_1_1:235295030-235299397:-|nuORF ENST00000495224.1_1_1:235295030-235299397:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 329.02813720703125 3 329.174903 984.50288 0.025541 8.4074E-06 -0.77526 -0.0002552 -0.74972 -0.00024679 329.17461694316114 49.129 0.58929 46.13 45.723 46.312 -2.999 30 16 2 0 0 0 0.84582 1 8952 8952 8.1555 3.2585 1 2316000 1003 7192 540 541 1235 1235 0.010009007547068904 AEGHPKSLF 9 Unmodified _AEGHPKSLF_ 0 0 0 ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34 ENST00000495224.1_1_1:235295030-235299397:-|nuORF ENST00000495224.1_1_1:235295030-235299397:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 329.174903 984.50288 -0.11031 -3.6311E-05 -0.25886 -8.5211E-05 -0.36917 -0.00012152 329.1747784071925 46.172 0.65833 46.172 45.83 46.488 0 0.053865 9.6159E-05 NaN 8.1555 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2375000 1004 7192 540 541 0.010009007547068904 AEGHPKSLF 9 Unmodified _AEGHPKSLF_ 0 0 0 ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34 ENST00000495224.1_1_1:235295030-235299397:-|nuORF ENST00000495224.1_1_1:235295030-235299397:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 329.174903 984.50288 -0.37686 -0.00012405 -0.35354 -0.00011638 -0.7304 -0.00024043 329.1747141330464 49.017 0.62801 46.136 45.821 46.449 -2.8811 0.017428 2.6684E-06 NaN 8.1555 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3062700 1005 7192 540 541 0.010009007547068904 AEGHPKSLF 9 Unmodified _AEGHPKSLF_ 0 0 0 ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34 ENST00000495224.1_1_1:235295030-235299397:-|nuORF ENST00000495224.1_1_1:235295030-235299397:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 329.174903 984.50288 -0.76512 -0.00025186 -0.075171 -2.4744E-05 -0.84029 -0.0002766 329.17488565438094 49.042 0.61713 46.035 45.693 46.31 -3.0068 -0.083473 0.00027756 NaN 8.1555 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2973800 1006 7192 540 541 0.010009007547068904 AEGHQPQKVA 10 Unmodified _AEGHQPQKVA_ 0 0 0 ENSG00000104903|ENST00000264824|LYL1 ENSG00000104903|ENST00000264824|LYL1 ENSG00000104903|ENST00000264824|LYL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2806396484375 2 532.777805 1063.54106 0.98164 0.000523 -0.8644 -0.00046053 0.11724 6.2464E-05 532.7773890455964 23.983 0.90497 22.429 22.047 22.952 -1.5532 78 25 4 0 0 0 0.72406 1 4088 4088 8.7454 0.58988 1 14331000 1007 2267 541 542 1236 1236 0.011827866693920441 AEGHRCHP 8 Unmodified _AEGHRCHP_ 0 0 0 REV__nc|ENSG00000074660|Q14162-4|SCARF1 REV__nc|ENSG00000074660|Q14162-4|SCARF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74981689453125 2 453.703586 905.392618 0.50974 0.00023127 -2.2832 -0.0010359 -1.7735 -0.00080462 453.7020330202467 113.84 0.68884 109.57 109.34 110.03 -4.2725 26 19 2 0 0 0 0.95515 1 21895 21895 15.847 5.0233 1 864890 + 1008 14317 542 543 1237 1237 -0.06386222785317841 AEGHRKDKH 9 Unmodified _AEGHRKDKH_ 0 0 0 ENST00000486708.1_1_22:31924838-31946432:+|nuORF ENST00000486708.1_1_22:31924838-31946432:+|nuORF ENST00000486708.1_1_22:31924838-31946432:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2053527832031 3 359.856456 1076.54754 0.07501 2.6993E-05 -0.34273 -0.00012333 -0.26772 -9.634E-05 359.8562910012827 31.297 0.70025 29.18 28.896 29.597 -2.1167 27 19 2 0 0 0 0.8825 1 5740 5740 0 0 1 4675300 1009 10458 543 544 1238 1238 0.012327246207405551 AEGIEKNSSI 10 Unmodified _AEGIEKNSSI_ 0 0 0 chr12:130034910-130035022|342|13.53|0.02|9.71|-|1|LINC02418,LINC02418|1 chr12:130034910-130035022|342|13.53|0.02|9.71|-|1|LINC02418,LINC02418|1 chr12:130034910-130035022|342|13.53|0.02|9.71|-|1|LINC02418,LINC02418|1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6953735351562 2 524.269478 1046.5244 -0.28597 -0.00014993 -0.21635 -0.00011343 -0.50232 -0.00026335 524.2693499068905 49.808 0.45319 46.927 46.695 47.148 -2.8811 22 12 2 0 0 0 0.64074 1 9477 9477 27.629 13.723 1 1540600 1010 529 544 545 1239 1239 0.0030024099276033667 AEGIEPENGY 10 Unmodified _AEGIEPENGY_ 0 0 0 REV__ENSG00000117448|ENST00000351829|AKR1A1 REV__ENSG00000117448|ENST00000351829|AKR1A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2767333984375 2 539.738011 1077.46147 -0.15891 -8.5769E-05 0.33449 0.00018054 0.17558 9.477E-05 539.7381527937537 38.163 0.69221 35.694 35.438 36.13 -2.4688 63 19 5 0 0 0 0.71097 1 7019 7019 10.074 0.72649 1 97745000 + 1011 15520 545 546 1240 1240 -0.0741632479528107 AEGIHNFAP 9 Unmodified _AEGIHNFAP_ 0 0 0 BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;ENST00000497023.1_1_2:32727936-32730277:+|nuORF BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73687744140625 2 478.235242 954.45593 -0.29891 -0.00014295 0.29843 0.00014272 -0.00047678 -2.2801E-07 478.2353328169574 70.068 0.88603 70.068 69.598 70.484 0 63 24 3 0 0 0 0.088942 6 13605 13496;13500;13554;13567;13601;13605 74.929 37.949 1 7977700 1012 319 546 547 1241;1242;1243;1244;1245;1246 1246 -0.023119587964288257 AEGIHNFAP 9 Unmodified _AEGIHNFAP_ 0 0 0 BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;ENST00000497023.1_1_2:32727936-32730277:+|nuORF BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7367248535156 2 478.235242 954.45593 -0.096396 -4.61E-05 0.18966 9.0702E-05 0.093263 4.4602E-05 478.2352808683295 73.418 0.81799 70.107 69.671 70.489 -3.3107 52 22 3 0 0 0 0.066439 6 14296 14251;14296;14300;14320;14346;14349 71.922 35.841 1 7078600 1013 319 546 547 1247;1248;1249;1250;1251;1252 1248 -0.023119587964288257 AEGIHNFAP 9 Unmodified _AEGIHNFAP_ 0 0 0 BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;ENST00000497023.1_1_2:32727936-32730277:+|nuORF BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7219543457031 2 478.235242 954.45593 0.20928 0.00010008 -0.11383 -5.4436E-05 0.09545 4.5647E-05 478.23514977961685 73.651 0.8022 69.975 69.614 70.416 -3.6764 56 22 3 0 0 0 0.088942 4 13885 13885;13912;13961;13964 74.929 28.908 1 5276600 1014 319 546 547 1253;1254;1255;1256 1253 -0.023119587964288257 AEGIHNFAP 9 Unmodified _AEGIHNFAP_ 0 0 0 BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;ENST00000497023.1_1_2:32727936-32730277:+|nuORF BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73663330078125 2 478.235242 954.45593 0.37997 0.00018172 -0.3898 -0.00018642 -0.0098273 -4.6997E-06 478.2349953925398 73.593 0.9137 69.999 69.589 70.503 -3.594 63 25 3 0 0 0 0.058954 7 13963 13903;13915;13950;13963;13967;14005;14013 65.235 43.704 1 8127400 1015 319 546 547 1257;1258;1259;1260;1261;1262;1263 1260 -0.023119587964288257 AEGIKVTDA 9 Unmodified _AEGIKVTDA_ 0 0 0 ENSG00000168564|ENST00000504169|CDKN2AIP;CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant ENSG00000168564|ENST00000504169|CDKN2AIP ENSG00000168564|ENST00000504169|CDKN2AIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7474060058594 2 452.242732 902.470912 -0.36135 -0.00016342 0.30492 0.0001379 -0.056427 -2.5519E-05 452.24285159992615 40.055 0.84595 37.506 37.106 37.952 -2.5491 80 23 5 0 0 0 0.39189 1 7415 7415 26.268 10.421 1 81270000 1016 5921 547 548 1264 1264 0.015774882809068913 AEGIKVTDA 9 Unmodified _AEGIKVTDA_ 0 0 0 ENSG00000168564|ENST00000504169|CDKN2AIP;CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant ENSG00000168564|ENST00000504169|CDKN2AIP ENSG00000168564|ENST00000504169|CDKN2AIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7471008300781 2 452.242732 902.470912 0.063697 2.8807E-05 -0.06986 -3.1594E-05 -0.0061629 -2.7871E-06 452.2426679065873 39.979 1.0233 37.49 36.983 38.006 -2.4896 81 28 5 0 0 0 0.39189 1 7106 7106 26.268 5.8145 1 65028000 1017 5921 547 548 1265 1265 0.015774882809068913 AEGIKVTDA 9 Unmodified _AEGIKVTDA_ 0 0 0 ENSG00000168564|ENST00000504169|CDKN2AIP;CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant ENSG00000168564|ENST00000504169|CDKN2AIP ENSG00000168564|ENST00000504169|CDKN2AIP MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 452.242732 902.470912 0.32451 0.00014676 -0.32989 -0.00014919 -0.0053761 -2.4313E-06 452.24255382960877 37.632 1.1273 37.632 37.227 38.354 0 0.099177 -0.00029598 NaN 26.268 91 31 5 NaN NaN NaN NaN 0 NaN NaN 0 95584000 1018 5921 547 548 0.015774882809068913 AEGIPAHVI 9 Unmodified _AEGIPAHVI_ 0 0 0 SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant;SMOX|p.G303Afs*20|1|0.51|ENSG00000088826|chr20:4182381-4182381|G/-|frameshift_variant;nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-5|SMOX SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7555236816406 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 86.054 1 86.054 85.554 86.554 0 0 0 0 0.13752 1 16794 16794 32.117 6.7177 1 1019 1735 548 549 1266 1266 0.04053802243049631 AEGIPAHVI 9 Unmodified _AEGIPAHVI_ 0 0 0 SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant;SMOX|p.G303Afs*20|1|0.51|ENSG00000088826|chr20:4182381-4182381|G/-|frameshift_variant;nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-5|SMOX SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7567443847656 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 89.628 1 85.769 85.269 86.269 -3.8595 0 0 0 0.21848 1 17536 17536 18.135 2.2878 1 1020 1735 548 549 1267 1267 0.04053802243049631 AEGIPAHVI 9 Unmodified _AEGIPAHVI_ 0 0 0 SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant;SMOX|p.G303Afs*20|1|0.51|ENSG00000088826|chr20:4182381-4182381|G/-|frameshift_variant;nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-5|SMOX SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7560729980469 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 89.881 1 86.021 85.521 86.521 -3.8595 0 0 0 0.1124 1 17584 17584 36.044 5.4077 1 1021 1735 548 549 1268 1268 0.04053802243049631 AEGIPAHVI 9 Unmodified _AEGIPAHVI_ 0 0 0 SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant;SMOX|p.G303Afs*20|1|0.51|ENSG00000088826|chr20:4182381-4182381|G/-|frameshift_variant;nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-5|SMOX SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7560729980469 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 89.998 1 85.954 85.454 86.454 -4.0443 0 0 0 0.13752 1 17143 17143 32.117 6.7177 1 1022 1735 548 549 1269 1269 0.04053802243049631 AEGIPAHVI 9 Unmodified _AEGIPAHVI_ 0 0 0 SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant;SMOX|p.G303Afs*20|1|0.51|ENSG00000088826|chr20:4182381-4182381|G/-|frameshift_variant;nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-5|SMOX SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75604248046875 2 453.75581 905.497067 0.14327 6.5008E-05 -0.16558 -7.5131E-05 -0.02231 -1.0123E-05 453.7558778296559 89.679 0.55907 85.901 85.666 86.225 -3.7779 23 15 2 0 0 0 0.41781 1 17150 17150 24.674 2.9272 1 1228700 1023 1735 548 549 1270 1270 0.04053802243049631 AEGIWNGKPA 10 Unmodified _AEGIWNGKPA_ 0 0 0 REV__ENSG00000137558|ENST00000260113|PI15 REV__ENSG00000137558|ENST00000260113|PI15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.282470703125 2 521.769448 1041.52434 -0.21113 -0.00011016 -0.36295 -0.00018937 -0.57407 -0.00029953 521.7692481146607 33.237 0.76383 30.919 30.662 31.426 -2.3175 35 21 2 0 0 0 0.61964 1 6101 6101 18.146 1.2041 1 2481100 + 1024 16399 549 550 1271 1271 0.005242857834218739 AEGKESLEV 9 Unmodified _AEGKESLEV_ 0 0 0 REV__EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant REV__EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2440185546875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 62.764 1 62.764 62.264 63.264 0 0 0 0 0.18966 1 12056 12056 0.37959 0 1 + 1025 13777 550 551 1272 1272 -0.005428329272717747 AEGKGFIA 8 Unmodified _AEGKGFIA_ 0 0 0 nc|ENSG00000130038|Q9BSW2-1|CRACR2A;ENSG00000130038|ENST00000440314|CRACR2A nc|ENSG00000130038|Q9BSW2-1|CRACR2A nc|ENSG00000130038|Q9BSW2-1|CRACR2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 397.2254943847656 2 396.716153 791.417754 0.18241 7.2367E-05 -0.16744 -6.6427E-05 0.014972 5.9398E-06 396.7160148320166 42.743 0.90718 42.743 42.316 43.223 0 63 25 3 0 0 0 8448 1 8078 8078 10.074 9.3925 1 12467000 1026 3581 551 552 1273 1273 0.013701552888960578 AEGKGFIA 8 Unmodified _AEGKGFIA_ 0 0 0 nc|ENSG00000130038|Q9BSW2-1|CRACR2A;ENSG00000130038|ENST00000440314|CRACR2A nc|ENSG00000130038|Q9BSW2-1|CRACR2A nc|ENSG00000130038|Q9BSW2-1|CRACR2A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 396.716153 791.417754 -0.035499 -1.4083E-05 -0.11429 -4.5341E-05 -0.14979 -5.9424E-05 396.71602425015095 45.188 0.84986 42.323 41.912 42.762 -2.8653 -0.15623 -0.00018764 NaN 10.074 67 23 4 NaN NaN NaN NaN 0 NaN NaN 0 14333000 1027 3581 551 552 0.013701552888960578 AEGKGFIA 8 Unmodified _AEGKGFIA_ 0 0 0 nc|ENSG00000130038|Q9BSW2-1|CRACR2A;ENSG00000130038|ENST00000440314|CRACR2A nc|ENSG00000130038|Q9BSW2-1|CRACR2A nc|ENSG00000130038|Q9BSW2-1|CRACR2A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 396.716153 791.417754 -0.67428 -0.0002675 0.55423 0.00021987 -0.12006 -4.7628E-05 396.71629852905045 45.145 0.90894 42.379 41.975 42.884 -2.7655 -0.099871 0.00034278 NaN 10.074 60 25 3 NaN NaN NaN NaN 0 NaN NaN 0 10644000 1028 3581 551 552 0.013701552888960578 AEGKIDHPYG 10 Unmodified _AEGKIDHPYG_ 0 0 0 REV__nc|ENSG00000154930|Q9NUB1-2|ACSS1;REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1 REV__nc|ENSG00000154930|Q9NUB1-2|ACSS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7787475585938 2 543.764363 1085.51417 0.49719 0.00027036 -0.30557 -0.00016616 0.19163 0.0001042 543.7641476890013 75.415 0.61649 75.415 75.029 75.645 0 36 17 3 0 0 0 0.4708 1 14631 14631 26.268 7.0112 1 5552100 + 1029 17203;24106 552 553 1274 1274 -0.025163219418118388 AEGKIDHPYG 10 Unmodified _AEGKIDHPYG_ 0 0 0 REV__nc|ENSG00000154930|Q9NUB1-2|ACSS1;REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1 REV__nc|ENSG00000154930|Q9NUB1-2|ACSS1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.764363 1085.51417 0.24658 0.00013408 -0.59179 -0.0003218 -0.34521 -0.00018771 543.7640216212284 78.96 0.8075 75.45 75.136 75.943 -3.5102 0.015549 -0.00046951 NaN 26.268 49 22 3 NaN NaN NaN NaN 0 NaN NaN 0 8240300 + 1030 17203;24106 552 553 -0.025163219418118388 AEGKSKDKG 9 Unmodified _AEGKSKDKG_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-3|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-3|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2458801269531 2 460.245806 918.47706 0.24038 0.00011063 -0.075864 -3.4916E-05 0.16452 7.5718E-05 460.2457381917681 31.54 0.39171 29.513 29.302 29.694 -2.0264 18 10 2 0 0 0 0.57447 1 5470 5470 14.838 0.93222 1 686330 1031 12440;12439 553 554 1275 1275 0.014560065124328503 AEGKVRLLA 9 Unmodified _AEGKVRLLA_ 0 0 0 nc|ENSG00000126432|P30044-2|PRDX5;ENSG00000126432|ENST00000265462|PRDX5 nc|ENSG00000126432|P30044-2|PRDX5 nc|ENSG00000126432|P30044-2|PRDX5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7418518066406 2 478.798009 955.581465 0.18995 9.0949E-05 0.22889 0.00010959 0.41884 0.00020054 478.7980349603474 49.228 0.42038 49.228 48.915 49.336 0 19 11 2 0 0 0 0.64382 1 9246 9246 10.074 1.4806 1 1518500 1032 3428 554 555 1276 1276 0.10189753059796658 AEGKVRLLA 9 Unmodified _AEGKVRLLA_ 0 0 0 nc|ENSG00000126432|P30044-2|PRDX5;ENSG00000126432|ENST00000265462|PRDX5 nc|ENSG00000126432|P30044-2|PRDX5 nc|ENSG00000126432|P30044-2|PRDX5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72357177734375 2 478.798009 955.581465 -0.15937 -7.6306E-05 0.20147 9.6463E-05 0.042099 2.0157E-05 478.798091320953 51.653 0.44031 48.771 48.493 48.934 -2.8824 23 12 2 0 0 0 0.15274 2 9817 9775;9817 43.772 5.7984 1 1341200 1033 3428 554 555 1277;1278 1278 0.10189753059796658 AEGKVRLLA 9 Unmodified _AEGKVRLLA_ 0 0 0 nc|ENSG00000126432|P30044-2|PRDX5;ENSG00000126432|ENST00000265462|PRDX5 nc|ENSG00000126432|P30044-2|PRDX5 nc|ENSG00000126432|P30044-2|PRDX5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7377624511719 2 478.798009 955.581465 0.042725 2.0457E-05 0.12481 5.9759E-05 0.16754 8.0216E-05 478.7980502731869 51.754 0.45443 48.708 48.504 48.958 -3.0453 24 12 2 0 0 0 0.27464 1 9491 9491 24.882 10.043 1 1197700 1034 3428 554 555 1279 1279 0.10189753059796658 AEGKVRLLA 9 Unmodified _AEGKVRLLA_ 0 0 0 nc|ENSG00000126432|P30044-2|PRDX5;ENSG00000126432|ENST00000265462|PRDX5 nc|ENSG00000126432|P30044-2|PRDX5 nc|ENSG00000126432|P30044-2|PRDX5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73785400390625 2 478.798009 955.581465 -0.063361 -3.0337E-05 0.18998 9.0961E-05 0.12662 6.0624E-05 478.79801970341157 51.841 0.55092 48.79 48.453 49.004 -3.0517 23 15 2 0 0 0 0.38759 1 9568 9568 24.882 10.043 1 910830 1035 3428 554 555 1280 1280 0.10189753059796658 AEGKVRNKL 9 Unmodified _AEGKVRNKL_ 0 0 0 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.867431640625 3 338.873336 1013.59818 -0.32665 -0.00011069 0.32756 0.000111 0.00090539 3.0681E-07 338.87359156161995 25.476 0.55308 25.476 25.29 25.843 0 32 15 3 0 0 0 0.59831 1 4428 4428 0.0033805 0 1 5676600 1036 2913 555 556 1281 1281 0.09192253945752782 AEGKVRNKL 9 Unmodified _AEGKVRNKL_ 0 0 0 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.5325622558594 3 338.873336 1013.59818 -0.53212 -0.00018032 0.63012 0.00021353 0.098001 3.321E-05 338.8733878951496 27.233 0.70364 25.311 25.122 25.826 -1.9222 29 19 2 0 0 0 0.59831 1 4537 4537 0.0033805 0 1 5744000 1037 2913 555 556 1282 1282 0.09192253945752782 AEGLCKWI 8 Unmodified _AEGLCKWI_ 0 0 0 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.239501953125 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 56.49 1 53.596 53.096 54.096 -2.8944 0 0 0 0.21015 1 10825 10825 1.7423 0 1 1038 861 556 557 1283 1283 0.0008305747961685483 AEGLDAERSP 10 Unmodified _AEGLDAERSP_ 0 0 0 REV__nc|ENSG00000186638|Q5T7B8-2|KIF24 REV__nc|ENSG00000186638|Q5T7B8-2|KIF24 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2720336914062 2 522.751453 1043.48835 0.20842 0.00010895 2.4585 0.0012852 2.667 0.0013942 523.2532491540015 73.311 0.17686 73.311 73.17 73.347 0 5 4 2 0 0 0 0.871 1 14208 14208 6.2058 4.3615 1 686000 + 1039 19043 557 558 1284 1284 -0.03165216184106612 AEGLDPDRAV 10 Unmodified _AEGLDPDRAV_ 0 0 0 REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2633666992188 2 521.76182 1041.50909 -0.42769 -0.00022315 -0.058137 -3.0334E-05 -0.48583 -0.00025349 521.7618232897411 31.289 0.31481 29.263 29.022 29.336 -2.0264 12 8 2 0 0 0 0.68961 1 5391 5391 12.241 2.1667 1 547320 + 1040 13642 558 559 1285 1285 -0.010006258044313654 AEGLDPDRAV 10 Unmodified _AEGLDPDRAV_ 0 0 0 REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2631225585938 2 521.76182 1041.50909 0.55027 0.00028711 -0.5058 -0.00026391 0.044475 2.3206E-05 521.7615249867345 31.37 0.31697 29.222 29.057 29.374 -2.1483 11 8 2 0 0 0 0.63858 1 5406 5406 17.113 4.0704 1 432600 + 1041 13642 558 559 1286 1286 -0.010006258044313654 AEGLDPDRAV 10 Unmodified _AEGLDPDRAV_ 0 0 0 REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.76182 1041.50909 -0.42769 -0.00022315 -0.058137 -3.0334E-05 -0.48583 -0.00025349 521.7618232897411 31.289 0.31481 29.263 29.022 29.336 -2.0264 0.060289 0.00041793 NaN 17.113 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 547320 + 1042 13642 558 559 -0.010006258044313654 AEGLDPDRAV 10 Unmodified _AEGLDPDRAV_ 0 0 0 REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.76182 1041.50909 0.55027 0.00028711 -0.5058 -0.00026391 0.044475 2.3206E-05 521.7615249867345 31.37 0.31697 29.222 29.057 29.374 -2.1483 0.019294 -4.9214E-05 NaN 17.113 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 432600 + 1043 13642 558 559 -0.010006258044313654 AEGLEPKY 8 Unmodified _AEGLEPKY_ 0 0 0 ENSG00000231989|ENST00000522232|PPP1R2B;PPP1R2|p.R115Q|2|0.28|ENSG00000184203|chr3:195523751-195523751|C/T|missense_variant;PPP1R2|p.K137Sfs*6|1|0.36|ENSG00000184203|chr3:195519179-195519179|T/-|frameshift_variant;ENST00000420261.1_1_6:32846995-32847538:-|nuORF;nc|ENSG00000234515|Q96PQ5|PPP1R2P1;ENSG00000184203|ENST00000618156|PPP1R2 ENSG00000231989|ENST00000522232|PPP1R2B ENSG00000231989|ENST00000522232|PPP1R2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74945068359375 2 453.732 905.449448 NaN NaN NaN NaN NaN NaN NaN 48.571 1 45.621 45.121 46.121 -2.9499 0 0 0 0.21486 1 8892 8892 9.3474 0.75416 1 1044 7809 559 560 1287 1287 -0.007058967478201339 AEGLHSYP 8 Unmodified _AEGLHSYP_ 0 0 0 REV__TFAP2C|p.S72L|1|0.17|ENSG00000087510|chr20:56631371-56631371|C/T|missense_variant REV__TFAP2C|p.S72L|1|0.17|ENSG00000087510|chr20:56631371-56631371|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22064208984375 2 437.208692 872.402832 NaN NaN NaN NaN NaN NaN NaN 42.637 1 39.918 39.418 40.418 -2.7191 0 0 0 0.21323 1 7980 7980 14.582 0 1 + 1045 14506 560 561 1288 1288 -0.03847336579087823 AEGLQHPACR 10 Unmodified _AEGLQHPACR_ 0 0 0 nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12 nc|ENSG00000142405|P59046-2|NLRP12 nc|ENSG00000142405|P59046-2|NLRP12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2609252929688 2 541.264007 1080.51346 NaN NaN NaN NaN NaN NaN NaN 65.569 1 62.522 62.022 63.022 -3.047 0 0 0 0.22323 1 12693 12693 24.021 8.1734 1 1046 4416 561 562 1289 1289 -0.0235743986252146 AEGLRGIYT 9 Unmodified _AEGLRGIYT_ 0 0 0 ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF ENSG00000108528|ENST00000225665|SLC25A11 ENSG00000108528|ENST00000225665|SLC25A11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2642517089844 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 79.036 1 79.036 78.536 79.536 0 0 0 0 0.22962 1 15379 15379 14.838 0.93222 1 1047 2480 562 563 1290 1290 0.023328834091330464 AEGLRTEARQ 10 Unmodified _AEGLRTEARQ_ 0 0 0 ENST00000470570.1_1_1:237057716-237057905:+|nuORF ENST00000470570.1_1_1:237057716-237057905:+|nuORF ENST00000470570.1_1_1:237057716-237057905:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 377.869384765625 3 377.535271 1129.58398 0.24935 9.4138E-05 -4.0334 -0.0015228 -3.784 -0.0014286 377.8684851339037 32.734 0.1679 30.588 30.487 30.655 -2.1468 6 4 2 0 0 0 0.458 1 5691 5691 0.84494 0.83168 1 444120 1048 10202 563 564 1291 1291 0.024375567267725273 AEGLSHTP 8 Unmodified _AEGLSHTP_ 0 0 0 ENST00000358912.4_1_2:64322214-64322343:-|nuORF;ENSG00000197329|ENST00000358912|PELI1 ENST00000358912.4_1_2:64322214-64322343:-|nuORF ENST00000358912.4_1_2:64322214-64322343:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.8714599609375 2 406.200867 810.387182 0.019952 8.1046E-06 -0.1711 -6.9503E-05 -0.15115 -6.1398E-05 406.2007541515556 23.127 0.6969 23.127 22.749 23.446 0 49 19 3 0 0 0 0.1475 1 3888 3888 23.79 10.175 1 6881500 1049 7356 564 565 1292 1292 -0.025596230961355104 AEGLSHTP 8 Unmodified _AEGLSHTP_ 0 0 0 ENST00000358912.4_1_2:64322214-64322343:-|nuORF;ENSG00000197329|ENST00000358912|PELI1 ENST00000358912.4_1_2:64322214-64322343:-|nuORF ENST00000358912.4_1_2:64322214-64322343:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 406.200867 810.387182 0.82952 0.00033695 -0.89429 -0.00036326 -0.064776 -2.6312E-05 406.20043859562924 24.625 0.65567 22.976 22.58 23.235 -1.6482 -0.049517 -0.00038564 NaN 23.79 47 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6597600 1050 7356 564 565 -0.025596230961355104 AEGLSHTP 8 Unmodified _AEGLSHTP_ 0 0 0 ENST00000358912.4_1_2:64322214-64322343:-|nuORF;ENSG00000197329|ENST00000358912|PELI1 ENST00000358912.4_1_2:64322214-64322343:-|nuORF ENST00000358912.4_1_2:64322214-64322343:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 406.200867 810.387182 0.0013646 5.5431E-07 -0.083656 -3.3981E-05 -0.082291 -3.3427E-05 406.20078130309895 24.509 0.69004 22.975 22.609 23.299 -1.5342 -0.05137 0.00027293 NaN 23.79 50 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6097800 1051 7356 564 565 -0.025596230961355104 AEGLVYDCLV 10 Unmodified _AEGLVYDCLV_ 0 0 0 REV__nc|ENSG00000136114|Q9NS62-3|THSD1 REV__nc|ENSG00000136114|Q9NS62-3|THSD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.265869140625 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 90.88 1 87.103 86.603 87.603 -3.7779 0 0 0 0.22552 1 17394 17394 18.146 3.3081 1 + 1052 16314 565 566 1293 1293 -0.020890292482363293 AEGLWRPS 8 Unmodified _AEGLWRPS_ 0 0 0 REV__ENST00000332065.9_1_17:74078970-74079297:-|nuORF REV__ENST00000332065.9_1_17:74078970-74079297:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23760986328125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 45.378 1 42.513 42.013 43.013 -2.8653 0 0 0 0.21452 1 8234 8234 13.508 4.1604 1 + 1053 20621 566 567 1294 1294 0.0003634506618936939 AEGMLPKHDP 10 Unmodified _AEGMLPKHDP_ 0 0 0 REV__nc|ENSG00000123453|Q9UL12-2|SARDH REV__nc|ENSG00000123453|Q9UL12-2|SARDH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7709350585938 2 547.768591 1093.52263 0.0076964 4.2158E-06 1.9853 0.0010875 1.993 0.0010917 547.7689736724266 107.08 1.209 102.67 102.09 103.3 -4.4121 76 34 3 0 0 0 0.65108 1 20450 20450 16.149 0.30192 1 4172600 + 1054 15730 567 568 1295 1295 -0.020390912968423436 AEGMLPKHDP 10 Unmodified _AEGMLPKHDP_ 0 0 0 REV__nc|ENSG00000123453|Q9UL12-2|SARDH REV__nc|ENSG00000123453|Q9UL12-2|SARDH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7933959960938 2 547.768591 1093.52263 0.79219 0.00043394 0.48949 0.00026813 1.2817 0.00070206 547.7686670301196 106.69 0.9614 102.6 102.16 103.12 -4.0913 50 27 2 0 0 0 0.4942 1 20465 20465 24.991 3.4008 1 3742400 + 1055 15730 567 568 1296 1296 -0.020390912968423436 AEGNALKE 8 Unmodified _AEGNALKE_ 0 0 0 REV__ENSG00000169851|ENST00000695919|PCDH7 REV__ENSG00000169851|ENST00000695919|PCDH7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 832.4248657226562 1 831.420673 830.413397 0.20143 0.00016747 0.77708 0.00064608 0.97851 0.00081356 831.42125324191 40.921 0.67175 38.286 37.97 38.642 -2.6348 25 18 2 0 0 0 0.74398 1 7611 7611 7.9102 1.187 1 1346400 + 1056 18120 568 569 1297 1297 -0.008593539246589899 AEGNALKE 8 Unmodified _AEGNALKE_ 0 0 0 REV__ENSG00000169851|ENST00000695919|PCDH7 REV__ENSG00000169851|ENST00000695919|PCDH7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 831.420673 830.413397 0.20143 0.00016747 0.77708 0.00064608 0.97851 0.00081356 831.42125324191 40.921 0.67175 38.286 37.97 38.642 -2.6348 -0.10695 1.2147E-05 NaN 7.9102 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1346400 + 1057 18120 568 569 -0.008593539246589899 AEGNALKE 8 Unmodified _AEGNALKE_ 0 0 0 REV__ENSG00000169851|ENST00000695919|PCDH7 REV__ENSG00000169851|ENST00000695919|PCDH7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 831.420673 830.413397 0.20495 0.0001704 0.77548 0.00064475 0.98043 0.00081515 831.4211876526438 41.011 0.55745 38.472 38.103 38.66 -2.5398 0.078269 1.0814E-05 NaN 7.9102 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1892500 + 1058 18120 568 569 -0.008593539246589899 AEGNALKE 8 Unmodified _AEGNALKE_ 0 0 0 REV__ENSG00000169851|ENST00000695919|PCDH7 REV__ENSG00000169851|ENST00000695919|PCDH7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 831.420673 830.413397 0.24294 0.00020199 0.7443 0.00061883 0.98724 0.00082081 831.4212277326297 40.912 0.74428 38.422 38.109 38.853 -2.4896 0.028684 -1.5107E-05 NaN 7.9102 26 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1359000 + 1059 18120 568 569 -0.008593539246589899 AEGNDGCR 8 Unmodified _AEGNDGCR_ 0 0 0 REV__ENST00000507051.1_1_4:83821260-83821651:-|nuORF REV__ENST00000507051.1_1_4:83821260-83821651:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.10736083984375 2 411.163959 820.313365 NaN NaN NaN NaN NaN NaN NaN 17.739 1 17.739 17.239 18.239 0 0 0 0 0.21486 1 2821 2821 2.3027 0 1 + 1060 22497 569 570 1298 1298 -0.10397914530119579 AEGNEPPWC 9 Unmodified _AEGNEPPWC_ 0 0 0 ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 334.8412780761719 3 334.80437 1001.39128 NaN NaN NaN NaN NaN NaN NaN 24.873 1 23.339 22.839 23.839 -1.5342 0 0 0 0.19638 1 4065 4065 0.073264 0.069883 1 1061 1311 570 571 1299 1299 -0.10935901664743142 AEGNIRFR 8 Unmodified _AEGNIRFR_ 0 0 0 ENSG00000204262|ENST00000374866|COL5A2 ENSG00000204262|ENST00000374866|COL5A2 ENSG00000204262|ENST00000374866|COL5A2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7886962890625 2 481.761958 961.509363 NaN NaN NaN NaN NaN NaN NaN 35.381 1 33.128 32.628 33.628 -2.2527 0 0 0 0.21039 1 6232 6232 16.942 1.1741 1 1062 7568 571 572 1300 1300 0.027068387060808163 AEGPCGERP 9 Unmodified _AEGPCGERP_ 0 0 0 ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000021645|Q9Y4C0|NRXN3;NRXN3|p.R369Vfs*8|1|0.3|ENSG00000021645|chr14:78803793-78803793|G/-|frameshift_variant;nc|ENSG00000021645|Q9Y4C0-4|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23822021484375 2 458.203084 914.391615 NaN NaN NaN NaN NaN NaN NaN 57.181 1 54.005 53.505 54.505 -3.1761 0 0 0 0.23508 1 10653 10653 7.2892 0.93513 1 1063 1126 572 573 1301 1301 -0.06900481944876447 AEGPELPVA 9 Unmodified _AEGPELPVA_ 0 0 0 ENST00000452917.2_2_16:30970042-30970180:+|nuORF ENST00000452917.2_2_16:30970042-30970180:+|nuORF ENST00000452917.2_2_16:30970042-30970180:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 442.24261474609375 2 441.732 881.449448 0.12488 5.5165E-05 -0.00039317 -1.7368E-07 0.12449 5.4992E-05 441.7319393562644 97.709 1.0719 93.474 92.982 94.054 -4.2348 74 30 3 0 0 0 0.06955 1 18702 18702 26.995 15.246 1 9818300 1064 10000 573 574 1302 1302 0.003981032521778616 AEGPELPVA 9 Unmodified _AEGPELPVA_ 0 0 0 ENST00000452917.2_2_16:30970042-30970180:+|nuORF ENST00000452917.2_2_16:30970042-30970180:+|nuORF ENST00000452917.2_2_16:30970042-30970180:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 441.732 881.449448 -0.044384 -1.9606E-05 0.18307 8.087E-05 0.13869 6.1264E-05 441.7319770211918 93.271 1.0127 93.271 92.886 93.899 0 -0.12186 -1.99E-07 NaN 26.995 65 28 3 NaN NaN NaN NaN 0 NaN NaN 0 7597000 1065 10000 573 574 0.003981032521778616 AEGPELPVA 9 Unmodified _AEGPELPVA_ 0 0 0 ENST00000452917.2_2_16:30970042-30970180:+|nuORF ENST00000452917.2_2_16:30970042-30970180:+|nuORF ENST00000452917.2_2_16:30970042-30970180:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 441.732 881.449448 -0.086582 -3.8246E-05 0.3072 0.0001357 0.22062 9.7454E-05 441.7319803490969 97.53 0.90132 93.432 92.974 93.875 -4.0978 0.039542 0.00010946 NaN 26.995 60 25 4 NaN NaN NaN NaN 0 NaN NaN 0 8015400 1066 10000 573 574 0.003981032521778616 AEGPELPVA 9 Unmodified _AEGPELPVA_ 0 0 0 ENST00000452917.2_2_16:30970042-30970180:+|nuORF ENST00000452917.2_2_16:30970042-30970180:+|nuORF ENST00000452917.2_2_16:30970042-30970180:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 441.732 881.449448 -0.12988 -5.7371E-05 0.21205 9.367E-05 0.082174 3.6299E-05 441.7320449042582 97.313 1.007 93.394 93.02 94.027 -3.9194 0.0011104 2.5401E-05 NaN 26.995 58 28 3 NaN NaN NaN NaN 0 NaN NaN 0 7308000 1067 10000 573 574 0.003981032521778616 AEGPGAELS 9 Unmodified _AEGPGAELS_ 0 0 0 ENSG00000276231|ENST00000619866|PIK3R6 ENSG00000276231|ENST00000619866|PIK3R6 ENSG00000276231|ENST00000619866|PIK3R6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 832.3949584960938 1 830.389039 829.381762 0.17749 0.00014739 0.35916 0.00029824 0.53665 0.00044563 830.3892623746217 41.761 1.6102 39.11 38.618 40.229 -2.651 96 45 3 0 0 0 0.55979 1 7561 7561 15.847 0 1 9929000 1068 8030 574 575 1303 1303 -0.03975346678612368 AEGPGAELS 9 Unmodified _AEGPGAELS_ 0 0 0 ENSG00000276231|ENST00000619866|PIK3R6 ENSG00000276231|ENST00000619866|PIK3R6 ENSG00000276231|ENST00000619866|PIK3R6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 830.389039 829.381762 0.25107 0.00020849 0.33451 0.00027778 0.58558 0.00048626 830.3892189375464 41.738 1.465 39.103 38.677 40.142 -2.6348 -0.035569 0.00011839 NaN 15.847 91 41 3 NaN NaN NaN NaN 0 NaN NaN 0 10511000 1069 8030 574 575 -0.03975346678612368 AEGPGPPAP 9 Unmodified _AEGPGPPAP_ 0 0 0 nc|ENSG00000179094|O15534-4|PER1;PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant;ENSG00000179094|ENST00000317276|PER1;ENST00000577424.1_1_17:8050372-8050889:-|nuORF nc|ENSG00000179094|O15534-4|PER1 nc|ENSG00000179094|O15534-4|PER1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 397.2080993652344 2 396.697961 791.381368 -0.014719 -5.839E-06 -0.49066 -0.00019465 -0.50538 -0.00020048 396.6977330377782 40.261 1.0283 37.721 37.075 38.103 -2.5398 41 28 2 0 0 0 0.036898 1 7179 7179 11.749 7.2722 1 4146300 1070 6609 575 576 1304 1304 -0.0226672160781618 AEGPGPPAP 9 Unmodified _AEGPGPPAP_ 0 0 0 nc|ENSG00000179094|O15534-4|PER1;PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant;ENSG00000179094|ENST00000317276|PER1;ENST00000577424.1_1_17:8050372-8050889:-|nuORF nc|ENSG00000179094|O15534-4|PER1 nc|ENSG00000179094|O15534-4|PER1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 396.697961 791.381368 0.023682 9.3944E-06 -0.040787 -1.618E-05 -0.017105 -6.7856E-06 396.6978243564259 37.428 0.86458 37.428 36.922 37.787 0 -0.16898 0.00016832 NaN 11.749 46 24 3 NaN NaN NaN NaN 0 NaN NaN 0 1437400 1071 6609 575 576 -0.0226672160781618 AEGPGPPAP 9 Unmodified _AEGPGPPAP_ 0 0 0 nc|ENSG00000179094|O15534-4|PER1;PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant;ENSG00000179094|ENST00000317276|PER1;ENST00000577424.1_1_17:8050372-8050889:-|nuORF nc|ENSG00000179094|O15534-4|PER1 nc|ENSG00000179094|O15534-4|PER1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 396.697961 791.381368 -0.44362 -0.00017598 -0.21963 -8.7127E-05 -0.66325 -0.00026311 396.6978467041054 40.276 1.093 37.641 37.021 38.113 -2.6348 0.04466 2.6428E-05 NaN 11.749 52 30 3 NaN NaN NaN NaN 0 NaN NaN 0 3012500 1072 6609 575 576 -0.0226672160781618 AEGPGTLKSA 10 Unmodified _AEGPGTLKSA_ 0 0 0 REV__ENSG00000165084|ENST00000518698|C8orf34 REV__ENSG00000165084|ENST00000518698|C8orf34 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2569885253906 2 465.748182 929.481811 0.14195 6.6114E-05 -0.29093 -0.0001355 -0.14898 -6.9388E-05 465.7478846561963 23.39 0.93895 23.39 22.96 23.899 0 28 26 2 0 0 0 0.78938 1 3964 3964 11.495 2.7493 1 881990 + 1073 17738 576 577 1305 1305 0.014248906551870277 AEGPRDSAL 9 Unmodified _AEGPRDSAL_ 0 0 0 ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant ENSG00000106346|ENST00000306177|USP42 ENSG00000106346|ENST00000306177|USP42 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2305908203125 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 97.469 1 93.371 92.871 93.871 -4.0978 0 0 0 0.22251 1 19125 19125 16.942 4.4107 1 1074 2379 577 578 1306 1306 -0.0148856652166387 AEGPSARPAT 10 Unmodified _AEGPSARPAT_ 0 0 0 ENSG00000130287|ENST00000252575|NCAN;ENST00000590187.2_1_19:19337677-19349276:+|nuORF ENSG00000130287|ENST00000252575|NCAN ENSG00000130287|ENST00000252575|NCAN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7433166503906 2 478.743431 955.472308 -0.049475 -2.3686E-05 -0.043212 -2.0687E-05 -0.092687 -4.4373E-05 478.74339419721446 23.071 0.62436 23.071 22.713 23.338 0 32 17 2 0 0 0 0.61964 1 3972 3972 18.146 2.2992 1 956220 1075 3596 578 579 1307 1307 -0.007208776303286868 AEGPSHHLA 9 Unmodified _AEGPSHHLA_ 0 0 0 ENST00000494080.5_1_11:64109091-64110096:+|nuORF;CCDC88B|p.W639Gfs*3|1|0.52|ENSG00000168071|chr11:64344456-64344456|T/-|frameshift_variant;nc|ENSG00000168071|A6NC98-2|CCDC88B;ENST00000463837.5_1_11:64107738-64120281:+|nuORF;nc|ENSG00000168071|A6NC98-4|CCDC88B;ENSG00000168071|ENST00000356786|CCDC88B ENST00000494080.5_1_11:64109091-64110096:+|nuORF ENST00000494080.5_1_11:64109091-64110096:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2314147949219 2 459.725041 917.435529 -0.15247 -7.0092E-05 0.53784 0.00024726 0.38537 0.00017717 459.725183749016 47.624 0.74071 44.755 44.495 45.236 -2.869 40 20 3 0 0 0 0.53499 1 8973 8973 1.2148 1.2148 1 3250300 1076 426 579 580 1308 1308 -0.026491294562333678 AEGPYIDVV 9 Unmodified _AEGPYIDVV_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76904296875 2 481.745108 961.475663 0.00091203 4.3937E-07 0.25698 0.0001238 0.25789 0.00012424 481.74526124942065 121.3 0.61442 121.3 120.96 121.58 0 27 16 2 0 0 0 0.36689 1 23905 23905 34.102 9.4286 1 2123200 1077 3916 580 581 1309 1309 -0.006616275763349222 AEGPYIDVV 9 Unmodified _AEGPYIDVV_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2494812011719 2 481.745108 961.475663 0.16125 7.7681E-05 -0.67659 -0.00032594 -0.51534 -0.00024826 481.7451410361262 126.03 0.63508 121.43 121.08 121.71 -4.5984 46 17 3 0 0 0 0.36689 1 24844 24844 20.454 0 1 4790300 1078 3916 580 581 1310 1310 -0.006616275763349222 AEGPYIDVV 9 Unmodified _AEGPYIDVV_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7735290527344 2 481.745108 961.475663 0.31658 0.00015251 -0.70259 -0.00033847 -0.38601 -0.00018596 481.74505565748535 126.2 0.73664 121.4 121.04 121.78 -4.7959 44 20 3 0 0 0 0.12183 1 24255 24255 48.346 16.229 1 4025100 1079 3916 580 581 1311 1311 -0.006616275763349222 AEGPYIDVV 9 Unmodified _AEGPYIDVV_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77386474609375 2 481.745108 961.475663 0.11738 5.6546E-05 -0.70051 -0.00033747 -0.58313 -0.00028092 481.7451680440075 126.05 0.7585 121.4 121.08 121.84 -4.6495 46 20 3 0 0 0 0.35556 1 24304 24304 12.241 11.559 1 3003600 1080 3916 580 581 1312 1312 -0.006616275763349222 AEGQKVKDS 9 Unmodified _AEGQKVKDS_ 0 0 0 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3;ENST00000472099.1_1_1:109338858-109339065:+|nuORF STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2481384277344 2 481.251089 960.487624 0.021637 1.0413E-05 -1.1165 -0.00053734 -1.0949 -0.00052693 481.2503997935835 40.302 3.026 37.762 36.657 39.683 -2.5398 141 85 2 0 0 0 0.46541 1 7556 7556 21.747 1.293 1 101380000 1081 2921 581 582 1313 1313 0.005799891668630153 AEGQRLFSA 9 Unmodified _AEGQRLFSA_ 0 0 0 nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4;ENST00000569800.5_1_16:69167425-69171817:+|nuORF nc|ENSG00000141076|Q969X6-2|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2554016113281 2 489.753798 977.493044 -0.12393 -6.0697E-05 0.21427 0.00010494 0.090333 4.4241E-05 489.75385903519896 62.196 0.75196 62.196 61.837 62.589 0 51 21 3 0 0 0 0.018411 3 11942 11896;11942;11985 93.938 40.105 1 6490500 1082 4347 582 583 1314;1315;1316 1315 0.0033971274932582674 AEGQRLFSA 9 Unmodified _AEGQRLFSA_ 0 0 0 nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4;ENST00000569800.5_1_16:69167425-69171817:+|nuORF nc|ENSG00000141076|Q969X6-2|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2557373046875 2 489.753798 977.493044 0.1315 6.4401E-05 0.044994 2.2036E-05 0.17649 8.6437E-05 489.7537326585383 65.207 0.78524 62.16 61.693 62.478 -3.047 51 22 3 0 0 0 0.027341 4 12624 12578;12624;12645;12678 84.522 30.689 1 7073900 1083 4347 582 583 1317;1318;1319;1320 1318 0.0033971274932582674 AEGQRLFSA 9 Unmodified _AEGQRLFSA_ 0 0 0 nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4;ENST00000569800.5_1_16:69167425-69171817:+|nuORF nc|ENSG00000141076|Q969X6-2|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25543212890625 2 489.753798 977.493044 0.34184 0.00016742 -0.25533 -0.00012505 0.08651 4.2369E-05 489.753660818117 65.538 0.80897 62.08 61.682 62.491 -3.4581 46 22 3 0 0 0 0.027341 3 12278 12278;12291;12329 84.522 21.949 1 4620100 1084 4347 582 583 1321;1322;1323 1321 0.0033971274932582674 AEGQRLFSA 9 Unmodified _AEGQRLFSA_ 0 0 0 nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4;ENST00000569800.5_1_16:69167425-69171817:+|nuORF nc|ENSG00000141076|Q969X6-2|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2753601074219 2 489.753798 977.493044 0.059078 2.8934E-05 0.000299 1.4644E-07 0.059377 2.908E-05 489.7537908263459 65.35 0.88688 62.067 61.658 62.545 -3.2832 53 25 3 0 0 0 0.027341 4 12283 12245;12283;12291;12299 84.522 34.589 1 4900700 1085 4347 582 583 1324;1325;1326;1327 1325 0.0033971274932582674 AEGQRPGFGY 10 Unmodified _AEGQRPGFGY_ 0 0 0 ENST00000578715.5_1_18:74692385-74697165:-|nuORF;ENST00000490319.1_1_18:74692385-74697120:-|nuORF;ENST00000585201.5_1_18:74696670-74697120:-|nuORF;nc|ENSG00000197971|P02686-6|MBP;nc|ENSG00000197971|P02686-5|MBP;nc|ENSG00000197971|P02686-4|MBP;nc|ENSG00000197971|P02686-3|MBP;ENSG00000197971|ENST00000355994|MBP ENST00000578715.5_1_18:74692385-74697165:-|nuORF ENST00000578715.5_1_18:74692385-74697165:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2637329101562 2 541.256705 1080.49886 0.65181 0.00035279 -0.73211 -0.00039626 -0.080303 -4.3464E-05 541.2563058960682 77.833 0.65955 77.833 77.532 78.191 0 40 18 3 0 0 0 0.70357 1 15083 15083 10.824 0.75 1 5206000 1086 7417 583 584 1328 1328 -0.038171887389808035 AEGQVPEVS 9 Unmodified _AEGQVPEVS_ 0 0 0 REV__ENSG00000153684|ENST00000526619|GOLGA8F REV__ENSG00000153684|ENST00000526619|GOLGA8F MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2242736816406 2 458.224539 914.434526 -0.50977 -0.00023359 0.83914 0.00038451 0.32937 0.00015093 458.2249035757871 36.724 0.59216 34.255 33.979 34.571 -2.4688 28 16 2 0 0 0 0.42844 1 6834 6834 24.021 8.1734 1 1150200 + 1087 17152 584 585 1329 1329 -0.0261138861579866 AEGRAAKRC 9 Unmodified _AEGRAAKRC_ 0 0 0 ENSG00000179010|ENST00000382581|MRFAP1 ENSG00000179010|ENST00000382581|MRFAP1 ENSG00000179010|ENST00000382581|MRFAP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2516784667969 2 481.253443 960.492332 NaN NaN NaN NaN NaN NaN NaN 51.427 1 48.375 47.875 48.875 -3.0517 0 0 0 0.21469 1 9475 9475 19.257 3.4888 1 1088 6602 585 586 1330 1330 0.010505948286208877 AEGRIARDTY 10 Unmodified _AEGRIARDTY_ 0 0 0 REV__nc|ENSG00000095321|P43155-3|CRAT REV__nc|ENSG00000095321|P43155-3|CRAT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3167724609375 2 576.293819 1150.57309 0.33313 0.00019198 -0.42882 -0.00024712 -0.095686 -5.5143E-05 576.2934079539885 24.338 0.44864 24.338 24.132 24.58 0 24 12 3 0 0 0 0.71097 1 4234 4234 10.074 0 1 3636100 + 1089 14607 586 587 1331 1331 0.003821543525191373 AEGRLWLLN 9 Unmodified _AEGRLWLLN_ 0 0 0 HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|338|3|anti-sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|338|3|anti-sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|338|3|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.56011962890625 3 357.869703 1070.58728 -0.30078 -0.00010764 -2.6089 -0.00093366 -2.9097 -0.0010413 357.8685459948067 33.877 0.35347 31.662 31.562 31.915 -2.2158 12 9 2 0 0 0 0.85359 1 5901 5901 4.5289 0.65253 1 231700 1090 11881 587 588 1332 1332 0.05480851571473977 AEGRQGPDHRG 11 Unmodified _AEGRQGPDHRG_ 0 0 0 SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2705688476562 2 590.284317 1178.55408 0.50276 0.00029677 1.2794 0.00075523 1.7822 0.001052 590.2846643834955 82.761 0.58439 78.888 78.568 79.152 -3.8736 23 16 2 0 0 0 0.62556 1 15705 15705 0.11104 0 1 1354700 1091 25669 588 589 1333 1333 -0.028053822185484023 AEGRRRAF 8 Unmodified _AEGRRRAF_ 0 0 0 ENSG00000180475|ENST00000316770|OR10Q1 ENSG00000180475|ENST00000316770|OR10Q1 ENSG00000180475|ENST00000316770|OR10Q1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76934814453125 2 481.767575 961.520596 NaN NaN NaN NaN NaN NaN NaN 130.5 1 125.86 125.36 126.36 -4.6359 0 0 0 0.20462 1 25716 25716 21.747 1.293 1 1092 6677 589 590 1334 1334 0.03829660800226975 AEGSAERPQV 10 Unmodified _AEGSAERPQV_ 0 0 0 REV__CAMSAP3|p.V883Gfs*10|1|0.45|ENSG00000076826|chr19:7613137-7613138|-/G|frameshift_variant REV__CAMSAP3|p.V883Gfs*10|1|0.45|ENSG00000076826|chr19:7613137-7613138|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2591552734375 2 522.259445 1042.50434 NaN NaN NaN NaN NaN NaN NaN 20.536 1 19.139 18.639 19.639 -1.3966 0 0 0 0.22566 1 3433 3433 16.149 3.9084 1 + 1093 13247 590 591 1335 1335 -0.015215099471788562 AEGSLLPASA 10 Unmodified _AEGSLLPASA_ 0 0 0 ENST00000528694.1_1_11:829854-830133:+|nuORF ENST00000528694.1_1_11:829854-830133:+|nuORF ENST00000528694.1_1_11:829854-830133:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2330627441406 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 33.224 1 31.077 30.577 31.577 -2.1468 0 0 0 0.22552 1 5790 5790 18.146 0 1 1094 10940 591 592 1336 1336 0.010254882809022092 AEGSLLPASA 10 Unmodified _AEGSLLPASA_ 0 0 0 ENST00000528694.1_1_11:829854-830133:+|nuORF ENST00000528694.1_1_11:829854-830133:+|nuORF ENST00000528694.1_1_11:829854-830133:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22161865234375 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 51.467 1 48.422 47.922 48.922 -3.0453 0 0 0 0.15474 1 9454 9454 36.127 5.4905 1 1095 10940 591 592 1337 1337 0.010254882809022092 AEGSPFPSE 9 Unmodified _AEGSPFPSE_ 0 0 0 nc|ENSG00000187908|Q9UGM3-9|DMBT1;nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;DMBT1|p.H1721Tfs*24|1|0.2|ENSG00000187908|chr10:122621316-122621316|C/-|frameshift_variant;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1 nc|ENSG00000187908|Q9UGM3-9|DMBT1 nc|ENSG00000187908|Q9UGM3-9|DMBT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2394104003906 2 460.70344 919.392327 NaN NaN NaN NaN NaN NaN NaN 56.096 1 52.907 52.407 53.407 -3.1895 0 0 0 0.1761 1 10387 10387 26.884 3.7352 1 1096 850 592 593 1338 1338 -0.07059364024178194 AEGSSLTPGAA 11 Unmodified _AEGSSLTPGAA_ 0 0 0 REV__ENST00000586675.1_1_19:3673747-3674028:+|nuORF REV__ENST00000586675.1_1_19:3673747-3674028:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24517822265625 2 480.735271 959.45599 0.25695 0.00012353 -0.050449 -2.4253E-05 0.2065 9.9273E-05 480.73517177505136 35.616 0.55873 33.34 33.037 33.595 -2.2766 26 15 2 0 0 0 0.60461 1 6306 6306 22.736 6.8891 1 906040 + 1097 23267 593 594 1339 1339 -0.02536003587090363 AEGTAVYYCAR 11 Unmodified _AEGTAVYYCAR_ 0 0 0 nc|ENSG00000211958|A0A0C4DH36|IGHV3-38 nc|ENSG00000211958|A0A0C4DH36|IGHV3-38 nc|ENSG00000211958|A0A0C4DH36|IGHV3-38 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2766723632812 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 49.138 1 46.131 45.631 46.631 -3.0068 0 0 0 0.22943 1 9008 9008 8.7454 2.0222 1 1098 12586 594 595 1340 1340 -0.054160101307388686 AEGTFPGKI 9 Unmodified _AEGTFPGKI_ 0 0 0 ENSG00000126267|ENST00000649813|COX6B1 ENSG00000126267|ENST00000649813|COX6B1 ENSG00000126267|ENST00000649813|COX6B1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2462158203125 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 73.374 1 73.374 72.874 73.874 0 0 0 0 0.18705 1 14239 14239 25.399 2.2509 1 1099 3424 595 596 1341 1341 0.01858096006139931 AEGTFPGKI 9 Unmodified _AEGTFPGKI_ 0 0 0 ENSG00000126267|ENST00000649813|COX6B1 ENSG00000126267|ENST00000649813|COX6B1 ENSG00000126267|ENST00000649813|COX6B1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2487487792969 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 77.001 1 73.235 72.735 73.735 -3.7664 0 0 0 0.20294 1 14586 14586 22.736 4.5899 1 1100 3424 595 596 1342 1342 0.01858096006139931 AEGTPLEAAG 10 Unmodified _AEGTPLEAAG_ 0 0 0 ENST00000474353.6_1_10:97106208-97250794:-|nuORF ENST00000474353.6_1_10:97106208-97250794:-|nuORF ENST00000474353.6_1_10:97106208-97250794:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2254638671875 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 45.585 1 42.72 42.22 43.22 -2.8653 0 0 0 2.8426 1 8274 8274 0.26539 0 1 1101 10255 596 597 1343 1343 -0.026113886158100286 AEGTTLTAPQP 11 Unmodified _AEGTTLTAPQP_ 0 0 0 REV__IRF7|p.A252T|1|0.2|ENSG00000185507|chr11:613963-613963|C/T|missense_variant REV__IRF7|p.A252T|1|0.2|ENSG00000185507|chr11:613963-613963|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7891235351562 2 543.277303 1084.54005 -0.01943 -1.0556E-05 -1.0877 -0.00059093 -1.1071 -0.00060149 543.2766699394045 45.519 0.80889 42.652 42.154 42.963 -2.8665 57 22 3 0 0 0 0.57511 2 8191 8191;8199 19.362 2.249 1 5272900 + 1102 23674 597 598 1344;1345 1344 0.001165275098173879 AEGTYKLGNE 10 Unmodified _AEGTYKLGNE_ 0 0 0 REV__ENST00000324731.7_1_9:34917810-34918290:+|nuORF REV__ENST00000324731.7_1_9:34917810-34918290:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2597045898438 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 58.438 1 55.233 54.733 55.733 -3.2052 0 0 0 0.22588 1 10906 10906 12.241 2.8575 1 + 1103 20571 598 599 1346 1346 -0.028280455242793323 AEGVLCPSP 9 Unmodified _AEGVLCPSP_ 0 0 0 REV__CAMSAP3|p.V883Gfs*10|1|0.45|ENSG00000076826|chr19:7613137-7613138|-/G|frameshift_variant REV__CAMSAP3|p.V883Gfs*10|1|0.45|ENSG00000076826|chr19:7613137-7613138|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23333740234375 2 436.712753 871.410954 0.41121 0.00017958 -0.65085 -0.00028423 -0.23963 -0.00010465 436.71178058244703 112.09 0.59116 107.86 107.67 108.26 -4.2289 29 16 2 0 0 0 0.5059 1 21610 21610 19.257 1.122 1 605450 + 1104 13247 599 600 1347 1347 -0.02989525653970304 AEGVQRAPE 9 Unmodified _AEGVQRAPE_ 0 0 0 REV__ENST00000553879.5_1_14:24838333-24839008:+|nuORF REV__ENST00000553879.5_1_14:24838333-24839008:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74212646484375 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 31.43 1 29.404 28.904 29.904 -2.0264 0 0 0 0.23508 1 5424 5424 13.042 0.51092 1 + 1105 22966 600 601 1348 1348 -0.007208776303286868 AEGVTPVWG 9 Unmodified _AEGVTPVWG_ 0 0 0 REV__ENST00000493339.1_1_6:43112822-43113530:+|nuORF REV__ENST00000493339.1_1_6:43112822-43113530:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2335510253906 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 15.083 1 13.969 13.469 14.469 -1.1142 0 0 0 0.23508 1 2304 2304 4.756 0 1 + 1106 22346 601 602 1349 1349 -0.010864770279454206 AEGWSPSPPLY 11 Unmodified _AEGWSPSPPLY_ 0 0 0 nc|ENSG00000284638|A0A286YF18|SMIM44 nc|ENSG00000284638|A0A286YF18|SMIM44 nc|ENSG00000284638|A0A286YF18|SMIM44 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2827758789062 2 602.287671 1202.56079 NaN NaN NaN NaN NaN NaN NaN 92.822 1 92.822 92.322 93.322 0 0 0 0 0.224 1 18151 18151 13.042 5.1323 1 1107 12645 602 603 1350 1350 -0.03238882110508712 AEGYTQFY 8 Unmodified _AEGYTQFY_ 0 0 0 ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12 ENSG00000205277|ENST00000536621|MUC12 ENSG00000205277|ENST00000536621|MUC12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2565002441406 2 489.713808 977.413062 0.011114 5.4424E-06 -0.65635 -0.00032142 -0.64524 -0.00031598 489.7132694164567 99.687 0.93521 95.731 95.41 96.346 -3.9564 43 26 2 0 0 0 0.74718 1 19127 19127 24.674 5.4169 1 1225900 1108 7638 603 604 1351 1351 -0.0765477364451499 AEHAELFI 8 Unmodified _AEHAELFI_ 0 0 0 REV__tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1 REV__tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24981689453125 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 38.362 1 38.362 37.862 38.862 0 0 0 0 0.19954 1 7111 7111 24.674 5.4169 1 + 1109 25041 604 605 1352 1352 -0.0016619051090174253 AEHAELFI 8 Unmodified _AEHAELFI_ 0 0 0 REV__tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1 REV__tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24053955078125 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 40.709 1 38.074 37.574 38.574 -2.6348 0 0 0 0.17894 1 7590 7590 32.117 6.7177 1 + 1110 25041 604 605 1353 1353 -0.0016619051090174253 AEHDRLSCI 9 Unmodified _AEHDRLSCI_ 0 0 0 REV__ENSG00000178828|ENST00000375121|RNF186 REV__ENSG00000178828|ENST00000375121|RNF186 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2694702148438 2 522.250566 1042.48658 0.22974 0.00011998 -0.80056 -0.00041809 -0.57082 -0.00029811 522.250125853582 23.721 0.27519 23.721 23.552 23.827 0 11 7 2 0 0 0 0.44932 1 4072 4072 22.736 0.98964 1 602020 + 1111 18624 605 606 1354 1354 -0.03296548473713301 AEHDRLSCI 9 Unmodified _AEHDRLSCI_ 0 0 0 REV__ENSG00000178828|ENST00000375121|RNF186 REV__ENSG00000178828|ENST00000375121|RNF186 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2679443359375 2 522.250566 1042.48658 0.90801 0.00047421 -1.9975 -0.0010432 -1.0895 -0.00056901 522.2493223541187 25.288 0.21115 23.64 23.511 23.722 -1.6482 10 5 2 0 0 0 0.34411 1 4430 4430 29.082 4.0906 1 541700 + 1112 18624 605 606 1355 1355 -0.03296548473713301 AEHDRLSCI 9 Unmodified _AEHDRLSCI_ 0 0 0 REV__ENSG00000178828|ENST00000375121|RNF186 REV__ENSG00000178828|ENST00000375121|RNF186 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 522.250566 1042.48658 0.22974 0.00011998 -0.80056 -0.00041809 -0.57082 -0.00029811 522.250125853582 23.721 0.27519 23.721 23.552 23.827 0 0.10866 -2.5258E-05 NaN 29.082 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 602020 + 1113 18624 605 606 -0.03296548473713301 AEHDRLSCI 9 Unmodified _AEHDRLSCI_ 0 0 0 REV__ENSG00000178828|ENST00000375121|RNF186 REV__ENSG00000178828|ENST00000375121|RNF186 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.250566 1042.48658 0.90801 0.00047421 -1.9975 -0.0010432 -1.0895 -0.00056901 522.2493223541187 25.288 0.21115 23.64 23.511 23.722 -1.6482 0.027438 -0.0012755 NaN 29.082 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 541700 + 1114 18624 605 606 -0.03296548473713301 AEHDRLSCI 9 Unmodified _AEHDRLSCI_ 0 0 0 REV__ENSG00000178828|ENST00000375121|RNF186 REV__ENSG00000178828|ENST00000375121|RNF186 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.250566 1042.48658 -0.65208 -0.00034055 -0.2477 -0.00012936 -0.89978 -0.00046991 522.2502236266992 25.132 0.34849 23.597 23.367 23.716 -1.5342 -0.015147 0.0005522 NaN 29.082 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 655660 + 1115 18624 605 606 -0.03296548473713301 AEHDRLSCI 9 Unmodified _AEHDRLSCI_ 0 0 0 REV__ENSG00000178828|ENST00000375121|RNF186 REV__ENSG00000178828|ENST00000375121|RNF186 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 522.250566 1042.48658 -0.087061 -4.5468E-05 -0.44193 -0.0002308 -0.52899 -0.00027626 522.2502768752755 25.345 0.20646 23.492 23.364 23.57 -1.8534 -0.12095 0.00034934 NaN 29.082 12 5 3 NaN NaN NaN NaN 0 NaN NaN 0 491620 + 1116 18624 605 606 -0.03296548473713301 AEHDSLPH 8 Unmodified _AEHDSLPH_ 0 0 0 REV__HLA-C|p.L225P|1|0.25|ENSG00000204525|chr6:31270431-31270431|A/G|missense_variant REV__HLA-C|p.L225P|1|0.25|ENSG00000204525|chr6:31270431-31270431|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75555419921875 2 453.209224 904.403895 0.13473 6.106E-05 1.7753 0.00080458 1.91 0.00086564 453.210872102343 89.909 0.38586 86.131 85.873 86.259 -3.7779 12 10 2 0 0 0 0.8784 1 17188 17188 0.68139 0 1 308780 + 1117 19541 606 607 1356 1356 -0.05213122210182064 AEHENLRTP 9 Unmodified _AEHENLRTP_ 0 0 0 ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF;PSD4|p.S676Lfs*16|1|0.12|ENSG00000125637|chr2:113193359-113193360|-/C|frameshift_variant;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4 ENST00000418251.6_1_2:113943320-113958989:+|nuORF ENST00000418251.6_1_2:113943320-113958989:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2787475585938 2 533.767437 1065.52032 0.79255 0.00042304 -0.91303 -0.00048734 -0.12048 -6.4308E-05 533.766895760821 22.823 1.0759 21.269 20.651 21.727 -1.5532 54 30 3 0 0 0 0.59658 1 3957 3957 35.612 20.364 1 1607300 1118 3371 607 608 1357 1357 -0.009818037102832022 AEHFSIIRA 9 Unmodified _AEHFSIIRA_ 0 0 0 ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D ENSG00000181588|ENST00000402693|MEX3D ENSG00000181588|ENST00000402693|MEX3D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2630004882812 2 522.285266 1042.55598 0.48625 0.00025396 -0.45057 -0.00023533 0.035682 1.8636E-05 522.2849953476696 77.049 1.1174 77.049 76.55 77.667 0 90 31 4 0 0 0 1.9098E-16 1 15012 15012 179.17 97.283 1 52672000 1119 6731 608 609 1358 1358 0.03640278537386621 AEHFSIIRA 9 Unmodified _AEHFSIIRA_ 0 0 0 ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D ENSG00000181588|ENST00000402693|MEX3D ENSG00000181588|ENST00000402693|MEX3D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6871948242188 2 522.285266 1042.55598 -0.18885 -9.8634E-05 0.14691 7.6731E-05 -0.041937 -2.1903E-05 522.2853139858481 80.299 1.0204 76.789 76.367 77.388 -3.5102 83 28 4 0 0 0 0.21532 1 15711 15711 36.506 8.8774 1 39209000 1120 6731 608 609 1359 1359 0.03640278537386621 AEHFSIIRA 9 Unmodified _AEHFSIIRA_ 0 0 0 ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D ENSG00000181588|ENST00000402693|MEX3D ENSG00000181588|ENST00000402693|MEX3D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.51910400390625 3 348.525936 1042.55598 -0.01853 -6.4583E-06 -0.2353 -8.2008E-05 -0.25383 -8.8466E-05 348.52584866769024 80.607 1.2244 76.768 76.18 77.404 -3.8392 141 34 6 0 0 0 0.037776 1 15239 15239 74.094 45.012 1 124720000 1121 6731 608 609 1360 1360 0.03640278537386621 AEHFSIIRA 9 Unmodified _AEHFSIIRA_ 0 0 0 ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D ENSG00000181588|ENST00000402693|MEX3D ENSG00000181588|ENST00000402693|MEX3D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6913452148438 2 522.285266 1042.55598 -0.71781 -0.0003749 0.65415 0.00034165 -0.063657 -3.3247E-05 522.28557515812 80.532 1.2894 76.693 76.218 77.508 -3.8392 100 36 4 0 0 0 0.15274 1 15310 15310 43.772 22.235 1 34322000 1122 6731 608 609 1361 1361 0.03640278537386621 AEHFSIIRA 9 Unmodified _AEHFSIIRA_ 0 0 0 ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D ENSG00000181588|ENST00000402693|MEX3D ENSG00000181588|ENST00000402693|MEX3D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2630615234375 2 522.285266 1042.55598 -0.12255 -6.4005E-05 0.11652 6.0857E-05 -0.0060276 -3.1481E-06 522.2852869340581 80.395 1.5261 76.718 76.007 77.533 -3.6776 102 43 4 0 0 0 1.9098E-16 1 15325 15325 179.17 97.283 1 45251000 1123 6731 608 609 1362 1362 0.03640278537386621 AEHFSIIRA 9 Unmodified _AEHFSIIRA_ 0 0 0 ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D ENSG00000181588|ENST00000402693|MEX3D ENSG00000181588|ENST00000402693|MEX3D MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 348.525936 1042.55598 -0.029831 -1.0397E-05 -0.27851 -9.707E-05 -0.30835 -0.00010747 348.52583357423134 77.042 1.1874 77.042 76.55 77.737 0 0.17613 -7.188E-05 NaN 74.094 125 33 5 NaN NaN NaN NaN 0 NaN NaN 0 174930000 1124 6731 608 609 0.03640278537386621 AEHFSIIRA 9 Unmodified _AEHFSIIRA_ 0 0 0 ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D ENSG00000181588|ENST00000402693|MEX3D ENSG00000181588|ENST00000402693|MEX3D MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 348.525936 1042.55598 -0.24972 -8.7034E-05 -0.053546 -1.8662E-05 -0.30327 -0.0001057 348.5259384466605 80.298 1.1959 76.788 76.259 77.455 -3.5102 -0.078396 0.00016334 NaN 74.094 146 33 6 NaN NaN NaN NaN 0 NaN NaN 0 149780000 1125 6731 608 609 0.03640278537386621 AEHFSMIRA 9 Oxidation (M) _AEHFSM(Oxidation (M))IRA_ AEHFSM(1)IRA AEHFSM(69)IRA 0 0 1 ENSG00000176624|ENST00000406189|MEX3C;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant;ENSG00000183496|ENST00000329713|MEX3B ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2101135253906 3 359.843048 1076.50731 -0.11688 -4.206E-05 -0.11552 -4.157E-05 -0.23241 -8.363E-05 359.8430243712065 39.218 1.0777 39.218 38.531 39.609 0 93 30 5 0 0 0 0.12656 1 7295 7295 69.338 49.976 1 40233000 1126 6477 609 610 1363 1363 93 -0.027879580940407322 AEHFSMIRA 9 Oxidation (M) _AEHFSM(Oxidation (M))IRA_ AEHFSM(1)IRA AEHFSM(53)IRA 0 0 1 ENSG00000176624|ENST00000406189|MEX3C;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant;ENSG00000183496|ENST00000329713|MEX3B ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2014465332031 3 359.843048 1076.50731 -0.091127 -3.2791E-05 -0.18823 -6.7732E-05 -0.27935 -0.00010052 359.8429651866892 40.155 1.0663 40.155 39.609 40.675 0 83 29 4 0 0 0 0.29034 1 7490 7490 53.317 37.168 1 17233000 1127 6477 609 610 1364 1364 93 -0.027879580940407322 AEHFSMIRA 9 Oxidation (M) _AEHFSM(Oxidation (M))IRA_ AEHFSM(1)IRA AEHFSM(65)IRA 0 0 1 ENSG00000176624|ENST00000406189|MEX3C;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant;ENSG00000183496|ENST00000329713|MEX3B ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.210205078125 3 359.843048 1076.50731 -0.42728 -0.00015375 0.13859 4.9871E-05 -0.28869 -0.00010388 359.8431249712526 41.88 0.92829 39.238 38.738 39.666 -2.6421 81 26 5 0 0 0 0.13797 1 7843 7843 65.474 34.205 1 40490000 1128 6477 609 610 1365 1365 93 -0.027879580940407322 AEHFSMIRA 9 Oxidation (M) _AEHFSM(Oxidation (M))IRA_ AEHFSM(1)IRA AEHFSM(57)IRA 0 0 1 ENSG00000176624|ENST00000406189|MEX3C;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant;ENSG00000183496|ENST00000329713|MEX3B ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012634277344 3 359.843048 1076.50731 -0.050493 -1.817E-05 -0.21244 -7.6445E-05 -0.26293 -9.4614E-05 359.8429622284298 42.592 1.3002 39.941 39.537 40.837 -2.651 79 36 3 0 0 0 0.095704 1 7718 7718 57.249 40.136 1 14886000 1129 6477 609 610 1366 1366 93 -0.027879580940407322 AEHFSMIRA 9 Oxidation (M) _AEHFSM(Oxidation (M))IRA_ AEHFSM(1)IRA AEHFSM(59)IRA 0 0 1 ENSG00000176624|ENST00000406189|MEX3C;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant;ENSG00000183496|ENST00000329713|MEX3B ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20965576171875 3 359.843048 1076.50731 -0.054947 -1.9772E-05 -0.086269 -3.1043E-05 -0.14122 -5.0816E-05 359.84304051366473 41.795 1.2997 39.144 38.237 39.537 -2.651 89 36 4 0 0 0 0.137 1 7507 7507 59.052 34.061 1 29073000 1130 6477 609 610 1367 1367 93 -0.027879580940407322 AEHFSMIRA 9 Oxidation (M) _AEHFSM(Oxidation (M))IRA_ AEHFSM(1)IRA AEHFSM(50)IRA 0 0 1 ENSG00000176624|ENST00000406189|MEX3C;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant;ENSG00000183496|ENST00000329713|MEX3B ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2001953125 3 359.843048 1076.50731 -0.69206 -0.00024903 0.47588 0.00017124 -0.21618 -7.7791E-05 359.8431976586269 42.542 2.0684 39.937 39.503 41.572 -2.606 112 58 4 0 0 0 0.11836 1 7715 7715 49.527 34.279 1 17056000 1131 6477 609 610 1368 1368 93 -0.027879580940407322 AEHFSMIRA 9 Oxidation (M) _AEHFSM(Oxidation (M))IRA_ 0 0 1 ENSG00000176624|ENST00000406189|MEX3C;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant;ENSG00000183496|ENST00000329713|MEX3B ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.843048 1076.50731 -0.38072 -0.000137 0.099316 3.5738E-05 -0.28141 -0.00010126 359.84309367864677 42.915 0.9706 40.196 39.659 40.63 -2.7191 0.13888 2.2898E-05 NaN 57.249 75 26 4 NaN NaN NaN NaN 0 NaN NaN 0 18006000 1132 6477 609 610 93 -0.027879580940407322 AEHGGFKPN 9 Unmodified _AEHGGFKPN_ 0 0 0 REV__tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1 REV__tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7325134277344 2 478.732866 955.451179 NaN NaN NaN NaN NaN NaN NaN 95.12 1 90.929 90.429 91.429 -4.1911 0 0 0 0.18966 1 18152 18152 1.2148 0.53344 1 + 1133 25129 610 611 1369 1369 -0.02832842939199054 AEHGIFLPP 9 Unmodified _AEHGIFLPP_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2657470703125 2 490.763635 979.512717 0.17657 8.6652E-05 0.02017 9.8989E-06 0.19674 9.6551E-05 490.76361178689126 114.46 5.3012 114.46 112.46 117.76 0 533 151 5 0 0 0 0.012224 1 22644 22644 47.987 39.074 1 170340000 1134 5186 611 612 1370 1370 0.022140887600926362 AEHGIFLPP 9 Unmodified _AEHGIFLPP_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2635498046875 2 490.763635 979.512717 0.36424 0.00017876 -0.18211 -8.9374E-05 0.18213 8.9381E-05 490.76349725097595 118.94 5.4486 114.43 112.27 117.72 -4.502 545 154 5 0 0 0 0.040175 1 23587 23587 42.232 35.745 1 141780000 1135 5186 611 612 1371 1371 0.022140887600926362 AEHGIFLPP 9 Unmodified _AEHGIFLPP_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26171875 2 490.763635 979.512717 0.17868 8.7688E-05 0.0096132 4.7178E-06 0.18829 9.2406E-05 490.7635893565905 118.42 5.8741 114.01 111.91 117.78 -4.4088 598 165 5 0 0 0 0.0067311 1 23016 23016 42.232 35.745 1 134580000 1136 5186 611 612 1372 1372 0.022140887600926362 AEHGYASVLP 10 Unmodified _AEHGYASVLP_ 0 0 0 ENST00000515378.5_1_4:2256939-2263707:-|nuORF;ENSG00000123933|ENST00000337190|MXD4 ENST00000515378.5_1_4:2256939-2263707:-|nuORF ENST00000515378.5_1_4:2256939-2263707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2612915039062 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 89.2 1 89.2 88.7 89.7 0 0 0 0 0.12865 1 17419 17419 39.95 15.929 1 1137 3284 612 613 1373 1373 -0.011194204534831442 AEHGYASVLP 10 Unmodified _AEHGYASVLP_ 0 0 0 ENST00000515378.5_1_4:2256939-2263707:-|nuORF;ENSG00000123933|ENST00000337190|MXD4 ENST00000515378.5_1_4:2256939-2263707:-|nuORF ENST00000515378.5_1_4:2256939-2263707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2615356445312 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 89.423 1 89.423 88.923 89.923 0 0 0 0 0.073263 1 17463 17463 62.573 38.552 1 1138 3284 612 613 1374 1374 -0.011194204534831442 AEHGYASVLP 10 Unmodified _AEHGYASVLP_ 0 0 0 ENST00000515378.5_1_4:2256939-2263707:-|nuORF;ENSG00000123933|ENST00000337190|MXD4 ENST00000515378.5_1_4:2256939-2263707:-|nuORF ENST00000515378.5_1_4:2256939-2263707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2747802734375 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 89.488 1 89.488 88.988 89.988 0 0 0 0 0.12625 1 17476 17476 56.177 25.952 1 1139 3284 612 613 1375 1375 -0.011194204534831442 AEHGYASVLP 10 Unmodified _AEHGYASVLP_ 0 0 0 ENST00000515378.5_1_4:2256939-2263707:-|nuORF;ENSG00000123933|ENST00000337190|MXD4 ENST00000515378.5_1_4:2256939-2263707:-|nuORF ENST00000515378.5_1_4:2256939-2263707:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26171875 2 522.261456 1042.50836 -0.22465 -0.00011733 0.065927 3.4431E-05 -0.15872 -8.2894E-05 522.2614980972619 93.216 0.72528 89.226 88.795 89.521 -3.9907 35 20 2 0 0 0 0.15224 4 18233 18189;18216;18233;18279 47.749 26.002 1 2981600 1140 3284 612 613 1376;1377;1378;1379 1378 -0.011194204534831442 AEHGYASVLP 10 Unmodified _AEHGYASVLP_ 0 0 0 ENST00000515378.5_1_4:2256939-2263707:-|nuORF;ENSG00000123933|ENST00000337190|MXD4 ENST00000515378.5_1_4:2256939-2263707:-|nuORF ENST00000515378.5_1_4:2256939-2263707:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27197265625 2 522.261456 1042.50836 -0.47608 -0.00024864 0.51656 0.00026978 0.04048 2.1141E-05 522.2616519385192 93.321 0.74767 89.178 88.802 89.55 -4.1435 37 21 2 0 0 0 0.13946 7 17850 17736;17746;17782;17801;17826;17850;17854 49.933 28.492 1 2193200 1141 3284 612 613 1380;1381;1382;1383;1384;1385;1386 1385 -0.011194204534831442 AEHGYASVLP 10 Unmodified _AEHGYASVLP_ 0 0 0 ENST00000515378.5_1_4:2256939-2263707:-|nuORF;ENSG00000123933|ENST00000337190|MXD4 ENST00000515378.5_1_4:2256939-2263707:-|nuORF ENST00000515378.5_1_4:2256939-2263707:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2615966796875 2 522.261456 1042.50836 0.12367 6.4591E-05 -0.0035604 -1.8595E-06 0.12011 6.2731E-05 522.2614041688003 93.02 0.72517 89.176 88.883 89.608 -3.844 32 20 2 0 0 0 0.15224 5 17858 17770;17803;17815;17858;17907 47.749 27.334 1 2904400 1142 3284 612 613 1387;1388;1389;1390;1391 1390 -0.011194204534831442 AEHIIEATP 9 Unmodified _AEHIIEATP_ 0 0 0 CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1 CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2644348144531 2 490.756007 979.497461 0.15131 7.4254E-05 0.3763 0.00018467 0.52761 0.00025893 490.7561705552065 54.17 1.0651 54.17 53.53 54.595 0 48 29 2 0 0 0 0.62921 1 10341 10341 18.146 10.236 1 1265900 1143 375 613 614 1392 1392 0.006891771722166595 AEHIIEATP 9 Unmodified _AEHIIEATP_ 0 0 0 CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1 CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2655029296875 2 490.756007 979.497461 -0.03257 -1.5984E-05 0.83807 0.00041129 0.80551 0.00039531 490.7563874188783 56.794 0.86792 53.899 53.511 54.379 -2.8944 35 24 2 0 0 0 0.71527 1 10903 10903 13.906 0.86358 1 938420 1144 375 613 614 1393 1393 0.006891771722166595 AEHIIEATP 9 Unmodified _AEHIIEATP_ 0 0 0 CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1 CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.264404296875 2 490.756007 979.497461 0.15429 7.5719E-05 0.81898 0.00040192 0.97327 0.00047764 490.7564686416 57.079 0.90808 53.889 53.584 54.492 -3.1895 35 25 2 0 0 0 0.73268 1 10615 10615 13.042 11.198 1 935180 1145 375 613 614 1394 1394 0.006891771722166595 AEHIMELFP 9 Unmodified _AEHIMELFP_ 0 0 0 REV__nc|ENSG00000120885|P10909-3|CLU REV__nc|ENSG00000120885|P10909-3|CLU MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.769775390625 2 543.76806 1085.52157 NaN NaN NaN NaN NaN NaN NaN 24.511 1 24.511 24.011 25.011 0 0 0 0 0.16428 1 4224 4224 28.487 3.0875 1 + 1146 15635 614 615 1395 1395 -0.017773056657460984 AEHIMELFP 9 Unmodified _AEHIMELFP_ 0 0 0 REV__nc|ENSG00000120885|P10909-3|CLU REV__nc|ENSG00000120885|P10909-3|CLU MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7701416015625 2 543.76806 1085.52157 NaN NaN NaN NaN NaN NaN NaN 24.792 1 24.792 24.292 25.292 0 0 0 0 0.12288 1 4278 4278 34.102 8.7031 1 + 1147 15635 614 615 1396 1396 -0.017773056657460984 AEHIMELFP 9 Unmodified _AEHIMELFP_ 0 0 0 REV__nc|ENSG00000120885|P10909-3|CLU REV__nc|ENSG00000120885|P10909-3|CLU MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7699584960938 2 543.76806 1085.52157 NaN NaN NaN NaN NaN NaN NaN 25.017 1 25.017 24.517 25.517 0 0 0 0 0.16428 1 4325 4325 28.487 10.34 1 + 1148 15635 614 615 1397 1397 -0.017773056657460984 AEHIMELFP 9 Unmodified _AEHIMELFP_ 0 0 0 REV__nc|ENSG00000120885|P10909-3|CLU REV__nc|ENSG00000120885|P10909-3|CLU MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7701416015625 2 543.76806 1085.52157 NaN NaN NaN NaN NaN NaN NaN 26.277 1 24.642 24.142 25.142 -1.6347 0 0 0 0.16428 1 4351 4351 28.487 3.0875 1 + 1149 15635 614 615 1398 1398 -0.017773056657460984 AEHIMELFP 9 Unmodified _AEHIMELFP_ 0 0 0 REV__nc|ENSG00000120885|P10909-3|CLU REV__nc|ENSG00000120885|P10909-3|CLU MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7698974609375 2 543.76806 1085.52157 NaN NaN NaN NaN NaN NaN NaN 26.491 1 24.856 24.356 25.356 -1.6347 0 0 0 0.16428 1 4397 4397 28.487 2.2187 1 + 1150 15635 614 615 1399 1399 -0.017773056657460984 AEHIMELFP 9 Unmodified _AEHIMELFP_ 0 0 0 REV__nc|ENSG00000120885|P10909-3|CLU REV__nc|ENSG00000120885|P10909-3|CLU MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7702026367188 2 543.76806 1085.52157 NaN NaN NaN NaN NaN NaN NaN 26.698 1 25.064 24.564 25.564 -1.6347 0 0 0 0.12288 1 4440 4440 34.102 12.565 1 + 1151 15635 614 615 1400 1400 -0.017773056657460984 AEHKEFITA 9 Unmodified _AEHKEFITA_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6973266601562 2 523.269281 1044.52401 0.28792 0.00015066 -0.31502 -0.00016484 -0.027108 -1.4185E-05 523.2691314170615 38.302 1.1653 38.302 37.965 39.13 0 101 32 5 0 0 0 0.018411 1 7073 7073 93.938 27.481 1 207060000 1152 1252 615 616 1401 1401 0.0035286606357658457 AEHKEFITA 9 Unmodified _AEHKEFITA_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.685302734375 2 523.269281 1044.52401 -0.40918 -0.00021411 0.37802 0.00019781 -0.03116 -1.6305E-05 523.2694592182809 40.692 0.84212 38.058 37.729 38.571 -2.6348 88 23 5 0 0 0 0.028199 1 7598 7598 103.82 21.294 1 185670000 1153 1252 615 616 1402 1402 0.0035286606357658457 AEHKEFITA 9 Unmodified _AEHKEFITA_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.695556640625 2 523.269281 1044.52401 -0.61013 -0.00031926 0.5937 0.00031066 -0.016437 -8.6009E-06 523.2696120995148 40.558 1.3697 38.018 37.71 39.08 -2.5398 101 38 5 0 0 0 0.81359 1 7383 7383 11.495 0 1 207660000 1154 1252 615 616 1403 1403 0.0035286606357658457 AEHKEFITA 9 Unmodified _AEHKEFITA_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6828002929688 2 523.269281 1044.52401 0.14019 7.3359E-05 -0.18445 -9.6518E-05 -0.044258 -2.3159E-05 523.2691780945268 40.489 1.4111 38 37.685 39.096 -2.4896 120 39 5 0 0 0 0.028199 1 7251 7251 103.82 28.063 1 154570000 1155 1252 615 616 1404 1404 0.0035286606357658457 AEHKMLLS 8 Unmodified _AEHKMLLS_ 0 0 0 REV__nc|ENSG00000163554|P02549-2|SPTA1 REV__nc|ENSG00000163554|P02549-2|SPTA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1603698730469 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 38.365 1 38.365 37.865 38.865 0 0 0 0 0.20294 1 7112 7112 18.146 4.2403 1 + 1156 17584 616 617 1405 1405 0.018144425083505666 AEHLAAEAMAA 11 Unmodified _AEHLAAEAMAA_ 0 0 0 nc|nan|Q9H3H3|C11orf68;ENSG00000175573|ENST00000438576|C11orf68;nc|nan|Q9H3H3-1|C11orf68 nc|nan|Q9H3H3|C11orf68 nc|nan|Q9H3H3|C11orf68 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7923583984375 2 542.758223 1083.50189 0.14504 7.8719E-05 -0.15136 -8.215E-05 -0.0063207 -3.4306E-06 542.7569346007443 57.686 1.1611 54.481 53.758 54.919 -3.2052 78 30 3 0 0 0 0.50871 1 10785 10785 22.736 3.3743 1 2898000 1157 6422 617 618 1406 1406 -0.036516816765242766 AEHLALLY 8 Unmodified _AEHLALLY_ 0 0 0 ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25634765625 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 54.402 1 51.519 51.019 52.019 -2.8837 0 0 0 0.20568 1 10383 10383 20.871 3.7583 1 1158 2291 618 619 1407 1407 0.03470686385810495 AEHLALLY 8 Unmodified _AEHLALLY_ 0 0 0 ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2568054199219 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 54.615 1 51.48 50.98 51.98 -3.1352 0 0 0 0.20568 1 10082 10082 20.871 3.7583 1 1159 2291 618 619 1408 1408 0.03470686385810495 AEHLALLY 8 Unmodified _AEHLALLY_ 0 0 0 ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25799560546875 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 24.009 1 22.187 21.687 22.687 -1.8213 0 0 0 0.21486 1 3888 3888 10.183 1.5901 1 1160 2291 618 619 1409 1409 0.03470686385810495 AEHLALLY 8 Unmodified _AEHLALLY_ 0 0 0 ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2515563964844 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 54.659 1 51.521 51.021 52.021 -3.1377 0 0 0 0.17294 1 10122 10122 34.187 5.1058 1 1161 2291 618 619 1410 1410 0.03470686385810495 AEHLALLY 8 Unmodified _AEHLALLY_ 0 0 0 ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25689697265625 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 54.674 1 51.536 51.036 52.036 -3.1377 0 0 0 0.17294 1 10126 10126 34.187 7.8461 1 1162 2291 618 619 1411 1411 0.03470686385810495 AEHLLAQH 8 Unmodified _AEHLLAQH_ 0 0 0 COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2454833984375 2 459.743234 917.471915 0.21442 9.8577E-05 0.43047 0.00019791 0.64489 0.00029648 459.74332498815187 20.713 0.35625 20.713 20.529 20.885 0 14 9 2 0 0 0 0.08026 1 3435 3435 74.423 0 1 888880 1163 708 619 620 1412 1412 0.009877474404675013 AEHLLAQH 8 Unmodified _AEHLLAQH_ 0 0 0 COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24530029296875 2 459.743234 917.471915 0.48769 0.00022421 -0.022507 -1.0347E-05 0.46518 0.00021386 459.74321064520217 22.073 0.38591 20.599 20.377 20.763 -1.4742 21 10 3 0 0 0 0.07389 2 3783 3740;3783 81.613 0 1 1153200 1164 708 619 620 1413;1414 1414 0.009877474404675013 AEHLLAQH 8 Unmodified _AEHLLAQH_ 0 0 0 COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2274169921875 2 459.743234 917.471915 -0.19363 -8.9021E-05 0.75605 0.00034759 0.56241 0.00025857 459.7434947013073 22.017 0.34741 20.564 20.349 20.697 -1.4535 19 9 3 0 0 0 0.041576 2 3491 3473;3491 123.45 0 1 1298200 1165 708 619 620 1415;1416 1416 0.009877474404675013 AEHLLAQH 8 Unmodified _AEHLLAQH_ 0 0 0 COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2454528808594 2 459.743234 917.471915 -0.59502 -0.00027356 1.2246 0.000563 0.62959 0.00028945 459.743710217263 22.273 0.42102 20.484 20.222 20.643 -1.7886 17 11 2 0 0 0 0.07389 3 3537 3511;3537;3561 71.134 0 1 764020 1166 708 619 620 1417;1418;1419 1418 0.009877474404675013 AEHLMLLEA 9 Oxidation (M) _AEHLM(Oxidation (M))LLEA_ AEHLM(1)LLEA AEHLM(42)LLEA 0 0 1 nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6 nc|ENSG00000143164|Q58WW2|DCAF6 nc|ENSG00000143164|Q58WW2|DCAF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.256591796875 2 521.765517 1041.51648 0.71927 0.00037529 -0.56909 -0.00029693 0.15018 7.8361E-05 521.7649512158966 108.78 0.69794 104.6 104.25 104.95 -4.1826 30 19 2 0 0 0 0.16619 1 20954 20954 41.84 21.386 1 2279100 1167 4460 620 621 1420 1420 68 -0.00261609528365625 AEHLSELY 8 Unmodified _AEHLSELY_ 0 0 0 nc|ENSG00000174912|P0C7V9|METTL15P1;nc|ENSG00000169519|A6NJ78-2|METTL15;nc|ENSG00000169519|A6NJ78-4|METTL15;ENSG00000169519|ENST00000407364|METTL15 nc|ENSG00000174912|P0C7V9|METTL15P1 nc|ENSG00000174912|P0C7V9|METTL15P1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2373046875 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 25.941 1 25.941 25.441 26.441 0 0 0 0 0.17894 1 4523 4523 32.117 1.8922 1 1168 5987 621 622 1421 1421 -0.02654798236130773 AEHNGWSR 8 Unmodified _AEHNGWSR_ 0 0 0 REV__ENSG00000075702|ENST00000401500|WDR62 REV__ENSG00000075702|ENST00000401500|WDR62 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72161865234375 2 478.72029 955.426027 NaN NaN NaN NaN NaN NaN NaN 34.629 1 32.376 31.876 32.876 -2.2527 0 0 0 0.21486 1 6079 6079 10.824 0.75 1 + 1169 14337 622 623 1422 1422 -0.05346897741765133 AEHNLSMTSG 10 Unmodified _AEHNLSMTSG_ 0 0 0 REV__GRIP1|p.S931L|1|0.47|ENSG00000155974|chr12:66371914-66371914|G/A|missense_variant REV__GRIP1|p.S931L|1|0.47|ENSG00000155974|chr12:66371914-66371914|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.677490234375 2 523.732206 1045.44986 NaN NaN NaN NaN NaN NaN NaN 40.219 1 37.73 37.23 38.23 -2.4896 0 0 0 0.22588 1 7192 7192 8.7454 1.4562 1 + 1170 17235 623 624 1423 1423 -0.07104845090248091 AEHPDPPPWAS 11 Unmodified _AEHPDPPPWAS_ 0 0 0 REV__ENST00000478045.5_1_7:44801192-44807219:+|nuORF REV__ENST00000478045.5_1_7:44801192-44807219:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2749633789062 2 602.275095 1202.53564 NaN NaN NaN NaN NaN NaN NaN 25.045 1 25.045 24.545 25.545 0 0 0 0 0.22501 1 4331 4331 12.241 0 1 + 1171 22131 624 625 1424 1424 -0.057529369130861596 AEHPDPPPWAS 11 Unmodified _AEHPDPPPWAS_ 0 0 0 REV__ENST00000478045.5_1_7:44801192-44807219:+|nuORF REV__ENST00000478045.5_1_7:44801192-44807219:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2740478515625 2 602.275095 1202.53564 0.50543 0.00030441 -0.22099 -0.00013309 0.28444 0.00017131 602.27474335973 26.642 0.24932 25.007 24.822 25.072 -1.6347 12 6 3 0 0 0 0.50871 1 4423 4423 22.736 5.6234 1 409850 + 1172 22131 624 625 1425 1425 -0.057529369130861596 AEHPDPPPWAS 11 Unmodified _AEHPDPPPWAS_ 0 0 0 REV__ENST00000478045.5_1_7:44801192-44807219:+|nuORF REV__ENST00000478045.5_1_7:44801192-44807219:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2748413085938 2 602.275095 1202.53564 NaN NaN NaN NaN NaN NaN NaN 26.828 1 24.906 24.406 25.406 -1.9222 0 0 0 0.20718 1 4457 4457 17.113 0 1 + 1173 22131 624 625 1426 1426 -0.057529369130861596 AEHPIVIVC 9 Unmodified _AEHPIVIVC_ 0 0 0 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2764892578125 2 490.76532 979.516088 -0.38397 -0.00018844 0.63734 0.00031278 0.25337 0.00012435 490.76563073900934 107.94 1.4931 103.62 103.1 104.59 -4.32 107 42 4 0 0 0 0.14834 1 21273 21273 57.471 35.725 1 17583000 1174 4843 625 626 1427 1427 0.02551015542451296 AEHPIVIVC 9 Unmodified _AEHPIVIVC_ 0 0 0 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2757568359375 2 490.76532 979.516088 -0.0086227 -4.2317E-06 0.17188 8.4352E-05 0.16326 8.012E-05 490.76541134373576 108.06 1.0317 103.64 103.27 104.3 -4.4121 67 29 3 0 0 0 0.12295 1 20720 20720 54.774 30.753 1 6541900 1175 4843 625 626 1428 1428 0.02551015542451296 AEHPIVIVC 9 Unmodified _AEHPIVIVC_ 0 0 0 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27618408203125 2 490.76532 979.516088 0.45522 0.00022341 -0.26779 -0.00013142 0.18743 9.1986E-05 490.7652024864895 107.85 1.2511 103.72 103.18 104.43 -4.135 77 35 3 0 0 0 0.69192 1 20779 20779 26.884 1.4843 1 7115100 1176 4843 625 626 1429 1429 0.02551015542451296 AEHPLSRAEA 10 Unmodified _AEHPLSRAEA_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2769165039062 2 540.775262 1079.53597 0.23527 0.00012723 -0.022062 -1.193E-05 0.2132 0.0001153 540.7752486063459 18.005 0.39231 18.005 17.803 18.195 0 32 10 4 0 0 0 0.061191 2 2864 2853;2864 80.896 51.814 1 12559000 1177 4411 626 627 1430;1431 1431 -0.000615171932395242 AEHPLSRAEA 10 Unmodified _AEHPLSRAEA_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2767333984375 2 540.775262 1079.53597 0.32835 0.00017756 -0.10128 -5.4771E-05 0.22706 0.00012279 540.7751770663433 19.445 0.46114 18.049 17.848 18.309 -1.3966 38 12 4 0 0 0 0.050142 1 3230 3230 83.278 44.663 1 19426000 1178 4411 626 627 1432 1432 -0.000615171932395242 AEHPLSRAEA 10 Unmodified _AEHPLSRAEA_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2766723632812 2 540.775262 1079.53597 -0.23475 -0.00012695 0.44578 0.00024107 0.21103 0.00011412 540.7754978078477 19.381 0.48465 18.056 17.827 18.312 -1.3251 41 13 4 0 0 0 0.097962 2 2970 2970;2975 60.899 24.772 1 20615000 1179 4411 626 627 1433;1434 1433 -0.000615171932395242 AEHPLSRAEA 10 Unmodified _AEHPLSRAEA_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2763671875 2 540.775262 1079.53597 -0.89992 -0.00048666 1.1299 0.00061102 0.22997 0.00012436 540.7758506869814 19.669 0.55046 18.034 17.811 18.361 -1.6351 45 15 4 0 0 0 0.11752 2 2958 2958;3005 55.249 26.167 1 14083000 1180 4411 626 627 1435;1436 1435 -0.000615171932395242 AEHPLSRAEAA 11 Unmodified _AEHPLSRAEAA_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32958984375 2 576.293819 1150.57309 0.50857 0.00029309 -0.52826 -0.00030443 -0.019687 -1.1345E-05 576.2935029940019 21.617 0.5004 20.143 19.876 20.377 -1.4742 39 13 4 0 0 0 0.097871 1 3684 3684 77.049 44.263 1 10628000 1181 4411 627 628 1437 1437 0.003821543525418747 AEHPLSRAEAA 11 Unmodified _AEHPLSRAEAA_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3217163085938 2 576.293819 1150.57309 -0.64913 -0.00037409 0.71261 0.00041067 0.063483 3.6585E-05 576.2942161650593 21.861 0.57735 20.139 19.815 20.393 -1.7211 50 16 4 0 0 0 0.011604 2 3430 3430;3446 93.448 60.663 1 7551400 1182 4411 627 628 1438;1439 1438 0.003821543525418747 AEHPLSRAEAA 11 Unmodified _AEHPLSRAEAA_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.293819 1150.57309 0.26626 0.00015344 -0.22731 -0.000131 0.038944 2.2443E-05 576.2936747385514 19.98 0.47923 19.98 19.725 20.204 0 -0.1081 -0.00021692 NaN 93.448 31 13 3 NaN NaN NaN NaN 0 NaN NaN 0 6151500 1183 4411 627 628 0.003821543525418747 AEHPLSRAEAA 11 Unmodified _AEHPLSRAEAA_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.293819 1150.57309 -0.070169 -4.0438E-05 0.11495 6.6243E-05 0.044777 2.5805E-05 576.2938451243109 21.475 0.55437 20.091 19.828 20.383 -1.3847 0.0023204 0.00017756 NaN 93.448 50 15 4 NaN NaN NaN NaN 0 NaN NaN 0 12878000 1184 4411 627 628 0.003821543525418747 AEHPSPLGHV 10 Unmodified _AEHPSPLGHV_ 0 0 0 REV__FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant REV__FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2656860351562 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 26.009 1 24.087 23.587 24.587 -1.9222 0 0 0 2.8426 1 4294 4294 0.043787 0 1 + 1185 15314 628 629 1440 1440 3.401640651645721E-05 AEHQELRPS 9 Unmodified _AEHQELRPS_ 0 0 0 REV__ENST00000358654.2_2_22:24837584-24837644:+|nuORF REV__ENST00000358654.2_2_22:24837584-24837644:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26171875 2 533.767437 1065.52032 0.25595 0.00013662 -0.12089 -6.4526E-05 0.13506 7.2089E-05 533.7673146150743 22.84 0.81168 21.386 20.801 21.612 -1.4535 48 22 3 0 0 0 0.7906 1 3562 3562 18.146 1.0335 1 1755500 + 1186 20840 629 630 1441 1441 -0.009818037103059396 AEHQRFHTG 9 Unmodified _AEHQRFHTG_ 0 0 0 ENSG00000177932|ENST00000315475|ZNF354C ENSG00000177932|ENST00000315475|ZNF354C ENSG00000177932|ENST00000315475|ZNF354C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.282470703125 2 541.759946 1081.50534 -0.78128 -0.00042327 -0.13832 -7.4935E-05 -0.9196 -0.0004982 541.7597186339498 20.431 0.42113 18.796 18.605 19.026 -1.6351 25 11 3 0 0 0 0.74257 1 3106 3106 4.3292 0.38484 1 1274900 1187 6547 630 631 1442 1442 -0.03215250787616242 AEHQVAMAA 9 Unmodified _AEHQVAMAA_ 0 0 0 nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25848388671875 2 464.221277 926.428001 0.18075 8.3908E-05 -0.20686 -9.6029E-05 -0.026111 -1.2121E-05 464.2212595000563 27.641 0.45456 25.886 25.617 26.072 -1.7552 27 12 4 0 0 0 0.54076 1 4628 4628 17.113 4.5813 1 3608900 1188 7317 631 632 1443 1443 -0.038156050481802595 AEHQVAMAA 9 Unmodified _AEHQVAMAA_ 0 0 0 nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.221277 926.428001 0.21261 9.8697E-05 -0.20788 -9.6505E-05 0.0047239 2.1929E-06 464.22117705775054 26.026 0.41559 26.026 25.774 26.189 0 0.11584 0.00011005 NaN 17.113 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2832200 1189 7317 631 632 -0.038156050481802595 AEHQVAMAA 9 Unmodified _AEHQVAMAA_ 0 0 0 nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.221277 926.428001 0.82157 0.00038139 -0.87798 -0.00040758 -0.056417 -2.619E-05 464.2209130812193 27.729 0.52773 25.947 25.699 26.227 -1.7821 0.037696 -0.0005121 NaN 17.113 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2591400 1190 7317 631 632 -0.038156050481802595 AEHQVAMAA 9 Unmodified _AEHQVAMAA_ 0 0 0 nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.221277 926.428001 0.22575 0.0001048 0.15611 7.2468E-05 0.38186 0.00017727 464.2212361825346 27.776 0.52825 25.78 25.467 25.995 -1.9962 -0.12963 0.00044799 NaN 17.113 26 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2304400 1191 7317 631 632 -0.038156050481802595 AEHRAQFLD 9 Unmodified _AEHRAQFLD_ 0 0 0 nc|ENSG00000161681|Q9Y566-2|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1 nc|ENSG00000161681|Q9Y566-2|SHANK1 nc|ENSG00000161681|Q9Y566-2|SHANK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7698364257812 2 543.76998 1085.52541 1.2886 0.0007007 -0.99523 -0.00054118 0.29336 0.00015952 543.7694275739452 26.614 1.0607 24.832 24.177 25.238 -1.7821 58 30 2 0 0 0 0.40602 3 4660 4660;4708;4758 25.399 0 1 1614200 1192 5297 632 633 1444;1445;1446 1444 -0.013934998476770488 AEHRAQFLD 9 Unmodified _AEHRAQFLD_ 0 0 0 nc|ENSG00000161681|Q9Y566-2|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1 nc|ENSG00000161681|Q9Y566-2|SHANK1 nc|ENSG00000161681|Q9Y566-2|SHANK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7700805664062 2 543.76998 1085.52541 0.14353 7.8045E-05 0.013116 7.1319E-06 0.15664 8.5177E-05 543.7699900254216 26.679 1.1695 24.757 24.02 25.19 -1.9222 58 32 2 0 0 0 0.40602 2 4416 4416;4441 25.399 0 1 1279400 1193 5297 632 633 1447;1448 1447 -0.013934998476770488 AEHRAQFLD 9 Unmodified _AEHRAQFLD_ 0 0 0 nc|ENSG00000161681|Q9Y566-2|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1 nc|ENSG00000161681|Q9Y566-2|SHANK1 nc|ENSG00000161681|Q9Y566-2|SHANK1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.76998 1085.52541 1.2886 0.0007007 -0.99523 -0.00054118 0.29336 0.00015952 543.7694275739452 26.614 1.0607 24.832 24.177 25.238 -1.7821 0.037596 -0.00057768 NaN 25.399 58 30 2 NaN NaN NaN NaN 0 NaN NaN 0 1614200 1194 5297 632 633 -0.013934998476770488 AEHRGLIFAA 10 Unmodified _AEHRGLIFAA_ 0 0 0 ENST00000476460.1_1_3:118227410-118269735:-|nuORF ENST00000476460.1_1_3:118227410-118269735:-|nuORF ENST00000476460.1_1_3:118227410-118269735:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.5357666015625 3 362.201452 1083.58253 -0.16799 -6.0848E-05 0.19005 6.8838E-05 0.02206 7.9903E-06 362.2014878253807 84.805 0.7356 84.805 84.381 85.117 0 34 20 2 0 0 0 0.15354 1 16520 16520 30.239 29.94 1 3104300 1195 10288 633 634 1449 1449 0.04407967428710435 AEHRGLIFAA 10 Unmodified _AEHRGLIFAA_ 0 0 0 ENST00000476460.1_1_3:118227410-118269735:-|nuORF ENST00000476460.1_1_3:118227410-118269735:-|nuORF ENST00000476460.1_1_3:118227410-118269735:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 362.201452 1083.58253 -0.33842 -0.00012258 0.49783 0.00018031 0.15941 5.7738E-05 362.2016231792683 88.199 0.681 84.406 83.943 84.624 -3.7926 -0.050851 0.00021985 NaN 30.239 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2577200 1196 10288 633 634 0.04407967428710435 AEHRGLIFAA 10 Unmodified _AEHRGLIFAA_ 0 0 0 ENST00000476460.1_1_3:118227410-118269735:-|nuORF ENST00000476460.1_1_3:118227410-118269735:-|nuORF ENST00000476460.1_1_3:118227410-118269735:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 362.201452 1083.58253 0.36049 0.00013057 -0.21622 -7.8316E-05 0.14427 5.2254E-05 362.2013491072407 88.278 0.80012 84.283 83.903 84.703 -3.9953 -0.17439 -0.00055605 NaN 30.239 46 22 3 NaN NaN NaN NaN 0 NaN NaN 0 2547200 1197 10288 633 634 0.04407967428710435 AEHRGLIFAA 10 Unmodified _AEHRGLIFAA_ 0 0 0 ENST00000476460.1_1_3:118227410-118269735:-|nuORF ENST00000476460.1_1_3:118227410-118269735:-|nuORF ENST00000476460.1_1_3:118227410-118269735:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 362.201452 1083.58253 -0.51118 -0.00018515 0.82654 0.00029938 0.31536 0.00011423 362.2016674052811 88.085 0.72991 84.334 83.909 84.639 -3.7501 -0.12257 0.00057703 NaN 30.239 41 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2969300 1198 10288 633 634 0.04407967428710435 AEHSPYYEA 9 Unmodified _AEHSPYYEA_ 0 0 0 nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2814331054688 2 533.727446 1065.44034 0.1173 6.2605E-05 -0.037828 -2.019E-05 0.079469 4.2415E-05 533.7273884865986 34.979 0.75962 34.979 34.587 35.346 0 76 21 5 0 0 0 0.026905 1 6390 6390 103.75 45.069 1 43884000 1199 3439 634 635 1450 1450 -0.08976290104146756 AEHSPYYEA 9 Unmodified _AEHSPYYEA_ 0 0 0 nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2720336914062 2 533.727446 1065.44034 -0.28709 -0.00015323 0.37496 0.00020012 0.087861 4.6894E-05 533.7275942015775 37.567 0.80021 35.098 34.772 35.573 -2.4688 74 22 5 0 0 0 0.029966 1 6967 6967 96.285 44.016 1 48864000 1200 3439 634 635 1451 1451 -0.08976290104146756 AEHSPYYEA 9 Unmodified _AEHSPYYEA_ 0 0 0 nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2819213867188 2 533.727446 1065.44034 0.44256 0.00023621 -0.23643 -0.00012619 0.20613 0.00011002 533.7272773805323 37.463 0.78767 35.115 34.754 35.541 -2.3479 76 22 5 0 0 0 0.029966 1 6638 6638 96.285 44.016 1 56328000 1201 3439 634 635 1452 1452 -0.08976290104146756 AEHSPYYEA 9 Unmodified _AEHSPYYEA_ 0 0 0 nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825317382812 2 533.727446 1065.44034 0.28425 0.00015171 -0.13503 -7.2069E-05 0.14922 7.9643E-05 533.7273548756681 37.429 0.79411 35.092 34.774 35.568 -2.3375 79 22 5 0 0 0 0.029966 1 6617 6617 96.285 44.016 1 48985000 1202 3439 634 635 1453 1453 -0.08976290104146756 AEHTGGGG 8 Unmodified _AEHTGGGG_ 0 0 0 ENST00000589389.5_1_16:4853547-4853640:-|nuORF ENST00000589389.5_1_16:4853547-4853640:-|nuORF ENST00000589389.5_1_16:4853547-4853640:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.17529296875 2 343.148635 684.282717 NaN NaN NaN NaN NaN NaN NaN 79.733 1 79.733 79.233 80.233 0 0 0 0 0.23749 1 15516 15516 0.0082765 0 1 1203 11589 635 636 1454 1454 -0.07205324852827744 AEHTGGGG 8 Unmodified _AEHTGGGG_ 0 0 0 ENST00000589389.5_1_16:4853547-4853640:-|nuORF ENST00000589389.5_1_16:4853547-4853640:-|nuORF ENST00000589389.5_1_16:4853547-4853640:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.1974792480469 2 343.148635 684.282717 NaN NaN NaN NaN NaN NaN NaN 49.857 1 46.85 46.35 47.35 -3.0068 0 0 0 0.23749 1 9151 9151 0.0082765 0 1 1204 11589 635 636 1455 1455 -0.07205324852827744 AEHVCDQQHL 10 Unmodified _AEHVCDQQHL_ 0 0 0 REV__TBC1D14|p.L519*|1|0.21|ENSG00000132405|chr4:7010689-7010689|T/-|frameshift_variant REV__TBC1D14|p.L519*|1|0.21|ENSG00000132405|chr4:7010689-7010689|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2640380859375 2 590.264204 1178.51386 NaN NaN NaN NaN NaN NaN NaN 19.993 1 18.358 17.858 18.858 -1.6351 0 0 0 0.22588 1 3050 3050 3.5965 0.31518 1 + 1205 16115 636 637 1456 1456 -0.0682606493332969 AEHWSVPC 8 Unmodified _AEHWSVPC_ 0 0 0 REV__nc|ENSG00000101199|Q8N6T3-3|ARFGAP1 REV__nc|ENSG00000101199|Q8N6T3-3|ARFGAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2574157714844 2 464.70272 927.390887 -0.098761 -4.5894E-05 1.0653 0.00049506 0.96657 0.00044917 464.703313802755 91.866 0.50893 87.941 87.581 88.09 -3.9251 19 14 2 0 0 0 0.62642 1 17955 17955 19.439 0 1 1498500 + 1206 23976 637 638 1457 1457 -0.07571276593921539 AEHYSSVY 8 Unmodified _AEHYSSVY_ 0 0 0 ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B ENSG00000170456|ENST00000389082|DENND5B ENSG00000170456|ENST00000389082|DENND5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7427673339844 2 478.211432 954.408311 0.14868 7.11E-05 0.29887 0.00014292 0.44755 0.00021402 478.2113718645622 39.406 0.45419 37.001 36.756 37.21 -2.4049 18 12 2 0 0 0 0.23681 1 7042 7042 50.855 27.707 1 697320 1207 6070 638 639 1458 1458 -0.07071657787275853 AEHYSSVY 8 Unmodified _AEHYSSVY_ 0 0 0 ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B ENSG00000170456|ENST00000389082|DENND5B ENSG00000170456|ENST00000389082|DENND5B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.211432 954.408311 -0.021988 -1.0515E-05 0.25783 0.0001233 0.23584 0.00011278 478.21147064950844 36.87 0.32303 36.87 36.704 37.027 0 -0.072698 -5.103E-05 NaN 50.855 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 898050 1208 6070 638 639 -0.07071657787275853 AEIAESVQA 9 Unmodified _AEIAESVQA_ 0 0 0 ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB ENST00000558725.5_1_15:67519241-67546969:-|nuORF ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2354431152344 2 459.232364 916.450176 0.37663 0.00017296 -0.13654 -6.2705E-05 0.24009 0.00011026 459.232250680748 51.173 1.4342 51.173 50.536 51.97 0 118 40 5 0 0 0 0.13708 1 9701 9701 46.021 2.1627 1 109770000 1209 2201 639 640 1459 1459 -0.011391020987616685 AEIAESVQA 9 Unmodified _AEIAESVQA_ 0 0 0 ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB ENST00000558725.5_1_15:67519241-67546969:-|nuORF ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 918.4589233398438 1 917.457453 916.450176 0.66482 0.00060994 -0.52642 -0.00048297 0.13839 0.00012697 917.4569275619457 51.166 0.97158 51.166 50.676 51.648 0 58 27 4 0 0 0 0.041554 1 9737 9737 74.929 3.0067 1 25642000 1210 2201 639 640 1460 1460 -0.011391020987616685 AEIAESVQA 9 Unmodified _AEIAESVQA_ 0 0 0 ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB ENST00000558725.5_1_15:67519241-67546969:-|nuORF ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23516845703125 2 459.232364 916.450176 -0.31991 -0.00014691 0.46113 0.00021177 0.14123 6.4856E-05 459.23254856184354 53.882 1.146 50.998 50.42 51.566 -2.8837 97 32 4 0 0 0 0.07738 2 10235 10235;10288 62.573 2.4988 1 193220000 1211 2201 639 640 1461;1462 1461 -0.011391020987616685 AEIAESVQA 9 Unmodified _AEIAESVQA_ 0 0 0 ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB ENST00000558725.5_1_15:67519241-67546969:-|nuORF ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2355041503906 2 459.232364 916.450176 0.0074256 3.4101E-06 0.35222 0.00016175 0.35965 0.00016516 459.23246623088926 54.093 1.3975 50.958 50.49 51.887 -3.1352 115 39 5 0 0 0 0.11717 3 9973 9973;10021;10067 49.933 2.1843 1 146050000 1212 2201 639 640 1463;1464;1465 1463 -0.011391020987616685 AEIAESVQA 9 Unmodified _AEIAESVQA_ 0 0 0 ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB ENST00000558725.5_1_15:67519241-67546969:-|nuORF ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 918.4601440429688 1 917.457453 916.450176 0.29127 0.00026722 -0.32521 -0.00029837 -0.033947 -3.1145E-05 917.4570892509793 54.092 0.9776 50.957 50.626 51.604 -3.1352 60 27 3 0 0 0 0.28819 1 10071 10071 32.305 1.6689 1 37688000 1213 2201 639 640 1466 1466 -0.011391020987616685 AEIAESVQA 9 Unmodified _AEIAESVQA_ 0 0 0 ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB ENST00000558725.5_1_15:67519241-67546969:-|nuORF ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23516845703125 2 459.232364 916.450176 -0.043101 -1.9794E-05 0.36847 0.00016921 0.32537 0.00014942 459.23249672487054 54.079 1.7489 50.941 50.467 52.216 -3.1377 121 49 4 0 0 0 0.13708 2 10038 10038;10090 46.021 2.1627 1 143760000 1214 2201 639 640 1467;1468 1467 -0.011391020987616685 AEIAESVQA 9 Unmodified _AEIAESVQA_ 0 0 0 ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB ENST00000558725.5_1_15:67519241-67546969:-|nuORF ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 917.457453 916.450176 -0.049498 -4.5413E-05 0.032399 2.9724E-05 -0.0171 -1.5688E-05 917.4574785436083 53.914 0.83661 51.03 50.558 51.394 -2.8837 0.0074517 0.00027479 NaN 74.929 53 23 3 NaN NaN NaN NaN 0 NaN NaN 0 36654000 1215 2201 639 640 -0.011391020987616685 AEIAESVQA 9 Unmodified _AEIAESVQA_ 0 0 0 ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB ENST00000558725.5_1_15:67519241-67546969:-|nuORF ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 917.457453 916.450176 0.1029 9.4402E-05 -0.15959 -0.00014642 -0.056693 -5.2013E-05 917.457182653253 54.076 0.90789 50.938 50.645 51.553 -3.1377 -0.084677 9.8647E-05 NaN 74.929 62 25 3 NaN NaN NaN NaN 0 NaN NaN 0 39173000 1216 2201 639 640 -0.011391020987616685 AEIAHNVSS 9 Unmodified _AEIAHNVSS_ 0 0 0 ENSG00000144713|ENST00000429711|RPL32;ENST00000458542.1_1_3:25791186-25791384:+|nuORF ENSG00000144713|ENST00000429711|RPL32 ENSG00000144713|ENST00000429711|RPL32 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24127197265625 2 464.230156 926.445759 0.13442 6.2403E-05 -0.14637 -6.7948E-05 -0.011943 -5.5442E-06 464.2300500960118 19.895 0.8706 18.499 18.276 19.146 -1.3966 59 24 5 0 0 0 0.20546 1 3281 3281 37.075 18.928 1 42270000 1217 4571 640 641 1469 1469 -0.02040566521668552 AEIAHNVSS 9 Unmodified _AEIAHNVSS_ 0 0 0 ENSG00000144713|ENST00000429711|RPL32;ENST00000458542.1_1_3:25791186-25791384:+|nuORF ENSG00000144713|ENST00000429711|RPL32 ENSG00000144713|ENST00000429711|RPL32 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25360107421875 2 464.230156 926.445759 -0.32844 -0.00015247 0.24263 0.00011264 -0.085803 -3.9832E-05 464.23021311387583 19.794 0.83919 18.469 18.247 19.086 -1.3251 55 23 4 0 0 0 0.11282 1 3036 3036 51.415 22.334 1 38582000 1218 4571 640 641 1470 1470 -0.02040566521668552 AEIAHNVSS 9 Unmodified _AEIAHNVSS_ 0 0 0 ENSG00000144713|ENST00000429711|RPL32;ENST00000458542.1_1_3:25791186-25791384:+|nuORF ENSG00000144713|ENST00000429711|RPL32 ENSG00000144713|ENST00000429711|RPL32 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.230156 926.445759 0.097439 4.5234E-05 -0.11503 -5.3402E-05 -0.017594 -8.1679E-06 464.23010542575514 18.586 1.5233 18.586 18.335 19.859 0 0.067878 -8.0151E-05 NaN 51.415 87 43 5 NaN NaN NaN NaN 0 NaN NaN 0 73738000 1219 4571 640 641 -0.02040566521668552 AEIAKLKAA 9 Unmodified _AEIAKLKAA_ 0 0 0 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2337341308594 2 457.78711 913.559667 0.28323 0.00012966 0.10816 4.9514E-05 0.39139 0.00017918 457.78710266465527 31.859 0.44694 31.859 31.635 32.082 0 29 12 3 0 0 0 0.080602 1 5762 5762 80.676 38.72 1 6578400 1220 3019 641 642 1471 1471 0.09942948311220334 AEIAKLKAA 9 Unmodified _AEIAKLKAA_ 0 0 0 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2278747558594 2 457.78711 913.559667 -0.18457 -8.4492E-05 0.30049 0.00013756 0.11593 5.3069E-05 457.78719644316175 34.011 0.4872 31.694 31.461 31.949 -2.3175 32 13 3 0 0 0 0.022252 1 6256 6256 90.135 36.302 1 4347300 1221 3019 641 642 1472 1472 0.09942948311220334 AEIAKLKAA 9 Unmodified _AEIAKLKAA_ 0 0 0 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23443603515625 2 457.78711 913.559667 0.15552 7.1193E-05 0.078548 3.5958E-05 0.23406 0.00010715 457.7871092476405 33.939 0.44385 31.792 31.532 31.976 -2.1468 36 12 4 0 0 0 0.080602 1 5931 5931 80.676 20.602 1 5437400 1222 3019 641 642 1473 1473 0.09942948311220334 AEIAKLKAA 9 Unmodified _AEIAKLKAA_ 0 0 0 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23162841796875 2 457.78711 913.559667 0.37509 0.00017171 -0.21057 -9.6397E-05 0.16452 7.5315E-05 457.7869572249025 34.012 0.56264 31.796 31.492 32.055 -2.2158 36 15 3 0 0 0 0.1155 1 5966 5966 71.708 33.532 1 4769000 1223 3019 641 642 1474 1474 0.09942948311220334 AEIANDLHP 9 Unmodified _AEIANDLHP_ 0 0 0 REV__ENST00000233699.8_1_2:75185926-75196546:+|nuORF REV__ENST00000233699.8_1_2:75185926-75196546:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2688293457031 2 490.245806 978.47706 0.027865 1.3661E-05 0.10827 5.3079E-05 0.13614 6.674E-05 490.24584669737766 74.236 1.0086 70.872 70.263 71.272 -3.3643 56 28 3 0 0 0 0.30618 1 14455 14455 31.268 2.7815 1 11471000 + 1224 20072 642 643 1475 1475 -0.013039934875905601 AEIANDLHP 9 Unmodified _AEIANDLHP_ 0 0 0 REV__ENST00000233699.8_1_2:75185926-75196546:+|nuORF REV__ENST00000233699.8_1_2:75185926-75196546:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.274658203125 2 490.245806 978.47706 0.098749 4.8411E-05 0.13815 6.7728E-05 0.2369 0.00011614 490.24588119881207 74.562 1.0771 70.968 70.396 71.473 -3.594 63 30 3 0 0 0 0.27986 1 14135 14135 32.786 0.4802 1 11323000 + 1225 20072 642 643 1476 1476 -0.013039934875905601 AEIANDLHP 9 Unmodified _AEIANDLHP_ 0 0 0 REV__ENST00000233699.8_1_2:75185926-75196546:+|nuORF REV__ENST00000233699.8_1_2:75185926-75196546:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 490.245806 978.47706 0.098749 4.8411E-05 0.13815 6.7728E-05 0.2369 0.00011614 490.24588119881207 74.562 1.0771 70.968 70.396 71.473 -3.594 0.035212 -6.5642E-05 NaN 32.786 63 30 3 NaN NaN NaN NaN 0 NaN NaN 0 11323000 + 1226 20072 642 643 -0.013039934875905601 AEIARYMIGK 10 Unmodified _AEIARYMIGK_ 0 0 0 REV__ENSG00000111696|ENST00000392876|NT5DC3 REV__ENSG00000111696|ENST00000392876|NT5DC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.320556640625 2 576.315709 1150.61686 0.13388 7.7154E-05 4.0832 0.0023532 4.2171 0.0024304 576.8175466364389 151.79 0.10979 147.04 146.99 147.1 -4.7523 4 2 2 0 0 0 0.48849 1 30172 30172 0.26539 0 1 1426100 + 1227 15257 643 644 1477 1477 0.047580475252971155 AEIASSLPAA 10 Unmodified _AEIASSLPAA_ 0 0 0 nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L nc|ENSG00000121210|A2VDJ0-2|TMEM131L nc|ENSG00000121210|A2VDJ0-2|TMEM131L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.250244140625 2 465.250557 928.486562 -0.1463 -6.8066E-05 0.17703 8.2361E-05 0.030726 1.4295E-05 465.25051958864105 88.403 0.82599 84.611 84.195 85.021 -3.7926 55 22 3 0 0 0 0.096811 1 17325 17325 61.357 15.337 1 6399700 1228 3171 644 645 1478 1478 0.01945774797957256 AEIASSLPAA 10 Unmodified _AEIASSLPAA_ 0 0 0 nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L nc|ENSG00000121210|A2VDJ0-2|TMEM131L nc|ENSG00000121210|A2VDJ0-2|TMEM131L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2503967285156 2 465.250557 928.486562 0.33841 0.00015744 -0.34449 -0.00016027 -0.0060825 -2.8299E-06 465.2502967389934 88.675 0.92893 84.68 84.256 85.184 -3.9953 62 26 3 0 0 0 0.096811 3 16898 16855;16898;16947 61.357 19.518 1 5478300 1229 3171 644 645 1479;1480;1481 1480 0.01945774797957256 AEIASSLPAA 10 Unmodified _AEIASSLPAA_ 0 0 0 nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L nc|ENSG00000121210|A2VDJ0-2|TMEM131L nc|ENSG00000121210|A2VDJ0-2|TMEM131L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2504577636719 2 465.250557 928.486562 0.19818 9.2204E-05 -0.97055 -0.00045155 -0.77237 -0.00035935 465.25038661065713 88.456 0.9097 84.706 84.292 85.201 -3.7501 69 25 4 0 0 0 0.096811 3 16967 16870;16918;16967 61.357 15.337 1 4401800 1230 3171 644 645 1482;1483;1484 1484 0.01945774797957256 AEICWKYAEDY 11 Unmodified _AEICWKYAEDY_ 0 0 0 REV__ENSG00000062725|ENST00000083182|APPBP2 REV__ENSG00000062725|ENST00000083182|APPBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 464.15203857421875 3 464.204311 1389.5911 -0.10974 -5.0942E-05 -1.0199 -0.00047345 -1.1297 -0.00052439 464.2038937873356 18.486 0.13708 17.175 17.108 17.245 -1.3109 5 3 2 0 0 0 0.96216 1 3007 3007 0.45452 0.087843 1 247230 + 1231 14155 645 646 1485 1485 -0.08810891507641827 AEICWKYAEDY 11 Unmodified _AEICWKYAEDY_ 0 0 0 REV__ENSG00000062725|ENST00000083182|APPBP2 REV__ENSG00000062725|ENST00000083182|APPBP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 464.204311 1389.5911 -0.41929 -0.00019463 -0.26226 -0.00012174 -0.68155 -0.00031638 464.2040954838033 18.423 0.24399 17.151 17.031 17.275 -1.2722 -0.011844 0.00035907 NaN 0.45452 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 618330 + 1232 14155 645 646 -0.08810891507641827 AEIDDRKQL 9 Unmodified _AEIDDRKQL_ 0 0 0 nc|ENSG00000141425|Q96P16-3|RPRD1A;ENSG00000141425|ENST00000399022|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7828979492188 2 544.290745 1086.56694 0.61299 0.00033365 0.082289 4.4789E-05 0.69528 0.00037844 544.2909723202715 29.818 0.17327 27.744 27.658 27.831 -2.0743 7 4 2 0 0 0 0.58921 1 5098 5098 8.1555 8.1262 1 244580 1233 4360 646 647 1486 1486 0.027116361209891693 AEIDDRKQL 9 Unmodified _AEIDDRKQL_ 0 0 0 nc|ENSG00000141425|Q96P16-3|RPRD1A;ENSG00000141425|ENST00000399022|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 544.290745 1086.56694 0.79302 0.00043163 -0.98359 -0.00053536 -0.19057 -0.00010373 544.2902397528251 29.771 0.27784 27.654 27.457 27.735 -2.1167 -0.06361 -0.0005955 NaN 8.1555 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 391370 1234 4360 646 647 0.027116361209891693 AEIDELPK 8 Unmodified _AEIDELPK_ 0 0 0 REV__SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant REV__SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2384338378906 2 457.745108 913.475663 -0.47318 -0.0002166 0.60526 0.00027705 0.13208 6.0458E-05 457.7453354799359 106.6 1.2181 102.34 101.62 102.84 -4.2638 71 34 4 0 0 0 0.56049 1 20929 20929 24.674 2.9272 1 16430000 + 1235 19323 647 648 1487 1487 0.015463724236724374 AEIDWERY 8 Unmodified _AEIDWERY_ 0 0 0 SGIP1|p.G427Dfs*71|1|0.38|ENSG00000118473|chr1:66682328-66682328|C/-|frameshift_variant;SGIP1|p.N627Tfs*21|1|0.07|ENSG00000118473|chr1:66729399-66729399|A/-|frameshift_variant;ENSG00000118473|ENST00000371037|SGIP1;nc|ENSG00000118473|Q9BQI5-2|SGIP1;nc|ENSG00000118473|Q9BQI5-3|SGIP1;ENST00000483060.1_1_1:67091531-67109432:+|nuORF;nc|ENSG00000118473|Q9BQI5-4|SGIP1;nc|ENSG00000118473|Q9BQI5-5|SGIP1 SGIP1|p.G427Dfs*71|1|0.38|ENSG00000118473|chr1:66682328-66682328|C/-|frameshift_variant SGIP1|p.G427Dfs*71|1|0.38|ENSG00000118473|chr1:66682328-66682328|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2662963867188 2 541.251089 1080.48762 NaN NaN NaN NaN NaN NaN NaN 21.644 1 19.923 19.423 20.423 -1.7211 0 0 0 0.21486 1 3395 3395 8.5933 2.8329 1 1236 3036 648 649 1488 1488 -0.04940010833138331 AEIEDPPIP 9 Unmodified _AEIEDPPIP_ 0 0 0 ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.K261Q|1|0.31|ENSG00000173473|chr3:47714426-47714426|T/G|missense_variant;SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant ENSG00000173473|ENST00000254480|SMARCC1 ENSG00000173473|ENST00000254480|SMARCC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2549743652344 2 490.75039 979.486227 0.26081 0.00012799 -0.09304 -4.5659E-05 0.16777 8.2335E-05 490.75033063463087 109.88 2.1503 109.88 108.95 111.1 0 236 61 5 0 0 0 0.037229 1 21530 21530 85.357 37.011 1 258430000 1237 6295 649 650 1489 1489 -0.004336449219067617 AEIEDPPIP 9 Unmodified _AEIEDPPIP_ 0 0 0 ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.K261Q|1|0.31|ENSG00000173473|chr3:47714426-47714426|T/G|missense_variant;SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant ENSG00000173473|ENST00000254480|SMARCC1 ENSG00000173473|ENST00000254480|SMARCC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2607421875 2 490.75039 979.486227 0.049632 2.4357E-05 0.046569 2.2854E-05 0.096201 4.7211E-05 490.75042212678056 114.47 2.646 110 108.92 111.56 -4.4726 267 75 5 0 0 0 0.031632 1 22611 22611 92.822 25.478 1 352600000 1238 6295 649 650 1490 1490 -0.004336449219067617 AEIEDPPIP 9 Unmodified _AEIEDPPIP_ 0 0 0 ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.K261Q|1|0.31|ENSG00000173473|chr3:47714426-47714426|T/G|missense_variant;SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant ENSG00000173473|ENST00000254480|SMARCC1 ENSG00000173473|ENST00000254480|SMARCC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 492.2697448730469 2 490.75039 979.486227 0.24165 0.00011859 -0.12552 -6.1601E-05 0.11613 5.6989E-05 490.75033429451986 114.57 2.862 110.01 108.86 111.72 -4.555 265 81 5 0 0 0 0.28246 1 22121 22121 8.9129 0 1 299520000 1239 6295 649 650 1491 1491 -0.004336449219067617 AEIEDPPIP 9 Unmodified _AEIEDPPIP_ 0 0 0 ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.K261Q|1|0.31|ENSG00000173473|chr3:47714426-47714426|T/G|missense_variant;SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant ENSG00000173473|ENST00000254480|SMARCC1 ENSG00000173473|ENST00000254480|SMARCC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25567626953125 2 490.75039 979.486227 0.30552 0.00014993 -0.19811 -9.7225E-05 0.1074 5.2709E-05 490.7502963237807 114.18 3.5111 109.87 108.77 112.28 -4.3136 317 99 6 0 0 0 0.031632 1 21975 21975 92.822 25.478 1 301800000 1240 6295 649 650 1492 1492 -0.004336449219067617 AEIEELTAS 9 Unmodified _AEIEELTAS_ 0 0 0 nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B nc|ENSG00000101166|Q9Y3B1-2|PRELID3B nc|ENSG00000101166|Q9Y3B1-2|PRELID3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2505187988281 2 481.73748 961.460406 -0.0066658 -3.2112E-06 0.21621 0.00010415 0.20954 0.00010094 481.7375357327392 75.644 1.1142 72.229 71.716 72.83 -3.4151 94 31 4 0 0 0 0.017753 1 14719 14719 120.45 38.837 1 58562000 1241 2042 650 651 1493 1493 -0.021865391641995302 AEIEHHEMA 9 Unmodified _AEIEHHEMA_ 0 0 0 PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.N955Tfs*59|2|0.31|ENSG00000163939|chr3:52589171-52589171|T/-|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.28|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1 PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2689208984375 2 533.734748 1065.45494 0.086774 4.6314E-05 0.12355 6.5942E-05 0.21032 0.00011226 533.7349786014333 20.096 0.45964 20.096 19.928 20.387 0 15 12 2 0 0 0 0.57447 1 3323 3323 14.838 5.4551 1 985190 1242 5487 651 652 1494 1494 -0.07516541227641937 AEIEHHEMA 9 Unmodified _AEIEHHEMA_ 0 0 0 PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.N955Tfs*59|2|0.31|ENSG00000163939|chr3:52589171-52589171|T/-|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.28|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1 PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2621459960938 2 533.734748 1065.45494 0.58654 0.00031306 -0.95216 -0.0005082 -0.36561 -0.00019514 533.7342852131025 21.617 0.32287 20.143 19.98 20.303 -1.4742 11 8 2 0 0 0 0.40905 1 3666 3666 34.402 31.12 1 941900 1243 5487 651 652 1495 1495 -0.07516541227641937 AEIEHHEMA 9 Unmodified _AEIEHHEMA_ 0 0 0 PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.N955Tfs*59|2|0.31|ENSG00000163939|chr3:52589171-52589171|T/-|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.28|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1 PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2716064453125 2 533.734748 1065.45494 0.18697 9.979E-05 -0.36244 -0.00019345 -0.17548 -9.3658E-05 533.7345776521123 21.553 0.24349 20.169 20.036 20.28 -1.3847 12 6 2 0 0 0 0.71527 1 3380 3380 19.257 5.3509 1 1294300 1244 5487 651 652 1496 1496 -0.07516541227641937 AEIEKQEREK 10 Unmodified _AEIEKQEREK_ 0 0 0 REV__nc|ENSG00000073614|P29375-2|KDM5A REV__nc|ENSG00000073614|P29375-2|KDM5A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7665405273438 2 630.333141 1258.65173 0.56629 0.00035695 -0.28868 -0.00018197 0.2776 0.00017498 630.3328732936059 35.24 0.34443 32.964 32.761 33.106 -2.2766 21 9 3 0 0 0 0.78938 1 6193 6193 27.629 6.0386 1 1375200 + 1245 14302 652 653 1497 1497 0.032749618669413394 AEIENLTGA 9 Unmodified _AEIENLTGA_ 0 0 0 nc|ENSG00000155100|Q8N6M0-2|OTUD6B;ENSG00000155100|ENST00000404789|OTUD6B nc|ENSG00000155100|Q8N6M0-2|OTUD6B nc|ENSG00000155100|Q8N6M0-2|OTUD6B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2353515625 2 459.232364 916.450176 0.30389 0.00013956 -0.018709 -8.5918E-06 0.28518 0.00013097 459.2323202548484 74.019 1.116 74.019 73.347 74.463 0 78 31 4 0 0 0 0.11717 1 14355 14355 49.933 8.0934 1 20000000 1246 5035 653 654 1498 1498 -0.011391020987730371 AEIENLTGA 9 Unmodified _AEIENLTGA_ 0 0 0 nc|ENSG00000155100|Q8N6M0-2|OTUD6B;ENSG00000155100|ENST00000404789|OTUD6B nc|ENSG00000155100|Q8N6M0-2|OTUD6B nc|ENSG00000155100|Q8N6M0-2|OTUD6B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.235107421875 2 459.232364 916.450176 -0.10245 -4.7047E-05 0.69417 0.00031879 0.59173 0.00027174 459.2326866303073 77.331 1.5773 73.868 72.888 74.465 -3.4633 85 44 3 0 0 0 0.16619 2 15109 15109;15154 41.84 7.4379 1 22902000 1247 5035 653 654 1499;1500 1499 -0.011391020987730371 AEIENLTGA 9 Unmodified _AEIENLTGA_ 0 0 0 nc|ENSG00000155100|Q8N6M0-2|OTUD6B;ENSG00000155100|ENST00000404789|OTUD6B nc|ENSG00000155100|Q8N6M0-2|OTUD6B nc|ENSG00000155100|Q8N6M0-2|OTUD6B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23516845703125 2 459.232364 916.450176 -0.032179 -1.4777E-05 0.44797 0.00020572 0.41579 0.00019094 459.23254269518856 77.836 1.6501 74.069 72.946 74.596 -3.7664 83 46 3 0 0 0 0.25183 1 14744 14744 34.402 0.29928 1 15610000 1248 5035 653 654 1501 1501 -0.011391020987730371 AEIENLTGA 9 Unmodified _AEIENLTGA_ 0 0 0 nc|ENSG00000155100|Q8N6M0-2|OTUD6B;ENSG00000155100|ENST00000404789|OTUD6B nc|ENSG00000155100|Q8N6M0-2|OTUD6B nc|ENSG00000155100|Q8N6M0-2|OTUD6B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2473449707031 2 459.232364 916.450176 0.061127 2.8071E-05 0.58847 0.00027024 0.64959 0.00029831 459.2325730656477 77.636 1.5829 73.978 73.077 74.66 -3.6588 105 44 4 0 0 0 0.16619 2 14802 14788;14802 41.84 7.4379 1 20522000 1249 5035 653 654 1502;1503 1503 -0.011391020987730371 AEIEPEAQA 9 Unmodified _AEIEPEAQA_ 0 0 0 ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENST00000473899.1_1_2:220473145-220474007:+|nuORF ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7419128417969 2 479.229822 956.445091 0.080106 3.8389E-05 0.35531 0.00017028 0.43542 0.00020867 479.2298347802259 39.462 0.83539 39.462 39.059 39.895 0 73 23 4 0 0 0 0.0013221 1 7332 7332 103.35 38.118 1 22622000 1250 4562 654 655 1504 1504 -0.034874059613798636 AEIEPEAQA 9 Unmodified _AEIEPEAQA_ 0 0 0 ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENST00000473899.1_1_2:220473145-220474007:+|nuORF ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7239074707031 2 479.229822 956.445091 -0.13412 -6.4275E-05 0.25103 0.0001203 0.11691 5.6027E-05 479.22985132715837 42.17 0.9851 39.451 39.001 39.987 -2.7191 75 27 4 0 0 0 0.02941 1 7932 7932 92.653 24.573 1 32170000 1251 4562 654 655 1505 1505 -0.034874059613798636 AEIEPEAQA 9 Unmodified _AEIEPEAQA_ 0 0 0 ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENST00000473899.1_1_2:220473145-220474007:+|nuORF ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7251281738281 2 479.229822 956.445091 -0.05562 -2.6655E-05 0.29349 0.00014065 0.23787 0.00011399 479.2298427395534 42.202 1.192 39.551 39.103 40.295 -2.651 78 33 4 0 0 0 1.0099E-10 1 7616 7616 155.03 54.655 1 27524000 1252 4562 654 655 1506 1506 -0.034874059613798636 AEIEPEAQA 9 Unmodified _AEIEPEAQA_ 0 0 0 ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENST00000473899.1_1_2:220473145-220474007:+|nuORF ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7228698730469 2 479.229822 956.445091 -0.00061219 -2.9338E-07 0.15267 7.3163E-05 0.15206 7.287E-05 479.22979037286115 42.197 1.264 39.591 39.084 40.348 -2.606 80 35 4 0 0 0 0.11402 1 7528 7528 60.074 25.672 1 26556000 1253 4562 654 655 1507 1507 -0.034874059613798636 AEIEPSAQA 9 Unmodified _AEIEPSAQA_ 0 0 0 GPRASP2|p.N30Rfs*52|1|0.12|ENSG00000158301|chrX:102714947-102714948|-/GA|frameshift_variant;GPRASP2|p.E396Rfs*68|1|0.14|ENSG00000158301|chrX:102716050-102716050|A/-|frameshift_variant;GPRASP2|p.L659Ffs*18|1|0.35|ENSG00000158301|chrX:102716839-102716840|-/T|frameshift_variant;GPRASP2|p.L755Tfs*15|1|0.32|ENSG00000158301|chrX:102717124-102717125|-/A|frameshift_variant;ENSG00000158301|ENST00000483720|GPRASP2 GPRASP2|p.N30Rfs*52|1|0.12|ENSG00000158301|chrX:102714947-102714948|-/GA|frameshift_variant GPRASP2|p.N30Rfs*52|1|0.12|ENSG00000158301|chrX:102714947-102714948|-/GA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2246398925781 2 458.224539 914.434526 0.25548 0.00011707 0.17969 8.2339E-05 0.43517 0.00019941 458.22448476624925 34.413 0.5815 34.413 34.108 34.689 0 27 16 2 0 0 0 0.34411 1 6262 6262 29.082 12.139 1 889230 1254 5161 655 656 1508 1508 -0.026113886158100286 AEIEPSAQA 9 Unmodified _AEIEPSAQA_ 0 0 0 GPRASP2|p.N30Rfs*52|1|0.12|ENSG00000158301|chrX:102714947-102714948|-/GA|frameshift_variant;GPRASP2|p.E396Rfs*68|1|0.14|ENSG00000158301|chrX:102716050-102716050|A/-|frameshift_variant;GPRASP2|p.L659Ffs*18|1|0.35|ENSG00000158301|chrX:102716839-102716840|-/T|frameshift_variant;GPRASP2|p.L755Tfs*15|1|0.32|ENSG00000158301|chrX:102717124-102717125|-/A|frameshift_variant;ENSG00000158301|ENST00000483720|GPRASP2 GPRASP2|p.N30Rfs*52|1|0.12|ENSG00000158301|chrX:102714947-102714948|-/GA|frameshift_variant GPRASP2|p.N30Rfs*52|1|0.12|ENSG00000158301|chrX:102714947-102714948|-/GA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2330322265625 2 458.224539 914.434526 -0.50977 -0.00023359 0.83914 0.00038451 0.32937 0.00015093 458.2249035757871 36.724 0.59216 34.255 33.979 34.571 -2.4688 28 16 2 0 0 0 0.42844 2 6760 6751;6760 24.021 7.0783 1 1150200 1255 5161 655 656 1509;1510 1510 -0.026113886158100286 AEIFDRQQ 8 Unmodified _AEIFDRQQ_ 0 0 0 REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2 REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 335.8310852050781 3 336.169929 1005.48796 -0.15668 -5.2671E-05 0.19689 6.6189E-05 0.040214 1.3519E-05 336.17004171267314 30.736 0.35022 28.662 28.394 28.744 -2.0743 14 9 2 0 0 0 0.89108 1 5255 5255 0.30703 0.055553 1 327700 + 1256 14416 656 657 1511 1511 -0.014565911132876863 AEIFDRQQ 8 Unmodified _AEIFDRQQ_ 0 0 0 REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2 REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 336.169929 1005.48796 0.15723 5.2856E-05 -0.29233 -9.8273E-05 -0.1351 -4.5417E-05 336.16976757749524 30.657 0.39027 28.54 28.329 28.719 -2.1167 -0.060944 -0.00021406 NaN 0.30703 16 10 3 NaN NaN NaN NaN 0 NaN NaN 0 453410 + 1257 14416 656 657 -0.014565911132876863 AEIFHSADA 9 Unmodified _AEIFHSADA_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25390625 2 480.724707 959.43486 0.29274 0.00014073 -0.54938 -0.0002641 -0.25664 -0.00012337 480.7242344661617 48.353 1.09 48.353 47.965 49.055 0 113 30 5 0 0 0 0.086188 1 9072 9072 74.929 36.955 1 48663000 1258 2443 657 658 1512 1512 -0.0464796889596073 AEIFHSADA 9 Unmodified _AEIFHSADA_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2453918457031 2 480.724707 959.43486 0.066966 3.2192E-05 -0.1944 -9.3453E-05 -0.12743 -6.1261E-05 480.7243819501997 51.306 1.1201 48.261 47.875 48.995 -3.0453 120 31 5 0 0 0 0.067773 3 9362 9362;9390;9476 65.235 27.261 1 45195000 1259 2443 657 658 1513;1514;1515 1513 -0.0464796889596073 AEIFHSADA 9 Unmodified _AEIFHSADA_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2516784667969 2 480.724707 959.43486 -0.11883 -5.7127E-05 -0.019762 -9.5E-06 -0.1386 -6.6627E-05 480.72447325454135 51.291 1.2841 48.239 47.854 49.138 -3.0517 135 36 5 0 0 0 0.026905 1 9475 9475 103.75 73.112 1 46408000 1260 2443 657 658 1516 1516 -0.0464796889596073 AEIGAVTLV 9 Unmodified _AEIGAVTLV_ 0 0 0 ENST00000496583.1_1_19:54695101-54695536:+|nuORF;ENSG00000170892|ENST00000396388|TSEN34 ENST00000496583.1_1_19:54695101-54695536:+|nuORF ENST00000496583.1_1_19:54695101-54695536:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21917724609375 2 436.758018 871.501483 -0.10474 -4.5745E-05 0.18705 8.1698E-05 0.082317 3.5953E-05 436.75802635094317 138.58 0.98886 133.94 133.39 134.38 -4.6413 55 27 3 0 0 0 0.060618 1 27379 27379 42.232 10.504 1 5762500 1261 6109 658 659 1517 1517 0.0605926666595451 AEIGAVTLV 9 Unmodified _AEIGAVTLV_ 0 0 0 ENST00000496583.1_1_19:54695101-54695536:+|nuORF;ENSG00000170892|ENST00000396388|TSEN34 ENST00000496583.1_1_19:54695101-54695536:+|nuORF ENST00000496583.1_1_19:54695101-54695536:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 436.758018 871.501483 0.16159 7.0575E-05 -0.080359 -3.5097E-05 0.08123 3.5478E-05 436.75788687428644 134.14 0.89914 134.14 133.59 134.49 0 0.078585 -5.3296E-05 NaN 42.232 41 25 2 NaN NaN NaN NaN 0 NaN NaN 0 3418800 1262 6109 658 659 0.0605926666595451 AEIGAVTLV 9 Unmodified _AEIGAVTLV_ 0 0 0 ENST00000496583.1_1_19:54695101-54695536:+|nuORF;ENSG00000170892|ENST00000396388|TSEN34 ENST00000496583.1_1_19:54695101-54695536:+|nuORF ENST00000496583.1_1_19:54695101-54695536:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 436.758018 871.501483 0.034742 1.5174E-05 -0.10081 -4.4031E-05 -0.06607 -2.8857E-05 436.7579103031529 139.02 1.1372 134.07 133.43 134.57 -4.952 0.0087034 -7.1162E-05 NaN 42.232 64 31 3 NaN NaN NaN NaN 0 NaN NaN 0 6169900 1263 6109 658 659 0.0605926666595451 AEIGEHVAP 9 Unmodified _AEIGEHVAP_ 0 0 0 ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5389404296875 2 461.735074 921.455596 0.44092 0.00020359 0.13231 6.1091E-05 0.57323 0.00026468 461.7349559567054 43.344 0.89468 43.344 42.953 43.848 0 80 25 6 0 0 0 0.054955 1 8074 8074 81.613 24.142 1 104050000 1264 1673 659 660 1518 1518 -0.00827378516294175 AEIGEHVAP 9 Unmodified _AEIGEHVAP_ 0 0 0 ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5407409667969 2 461.735074 921.455596 -0.056005 -2.5859E-05 0.67173 0.00031016 0.61573 0.0002843 461.7351523041566 46.326 1.0438 43.461 43.001 44.045 -2.8653 74 29 6 0 0 0 0.0038583 1 8411 8411 115.69 48.348 1 125120000 1265 1673 659 660 1519 1519 -0.00827378516294175 AEIGEHVAP 9 Unmodified _AEIGEHVAP_ 0 0 0 ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5380859375 2 461.735074 921.455596 -0.10154 -4.6882E-05 0.34923 0.00016125 0.2477 0.00011437 461.7351869703812 46.256 1.4522 43.39 42.996 44.449 -2.8666 105 41 6 0 0 0 0.01604 1 8419 8419 96.285 28.941 1 131750000 1266 1673 659 660 1520 1520 -0.00827378516294175 AEIGNAQNV 9 Unmodified _AEIGNAQNV_ 0 0 0 REV__ABO|p.D290N|1|0.29|ENSG00000175164|chr9:133255860-133255860|C/T|missense_variant REV__ABO|p.D290N|1|0.29|ENSG00000175164|chr9:133255860-133255860|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2308654785156 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 37.103 1 34.634 34.134 35.134 -2.4688 0 0 0 0.19674 1 6851 6851 0.40827 0 1 + 1267 12908 660 661 1521 1521 -0.0148856652166387 AEIGNYSCA 9 Unmodified _AEIGNYSCA_ 0 0 0 ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant;CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant;CELSR3|p.S1935Afs*4|1|0.38|ENSG00000008300|chr3:48651998-48651998|G/-|frameshift_variant ENSG00000008300|ENST00000164024|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1645812988281 3 309.800737 926.380382 0.0071869 2.2265E-06 0.53606 0.00016607 0.54324 0.0001683 309.8009017975958 112.76 0.66917 108.23 107.76 108.43 -4.5259 32 18 2 0 0 0 0.87708 1 21623 21623 7.1017 0 1 2014100 1268 1042 661 662 1522 1522 -0.08575304039027287 AEIGQNISS 9 Unmodified _AEIGQNISS_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2352294921875 2 459.729989 917.445425 0.33234 0.00015279 0.55049 0.00025307 0.88282 0.00040586 459.7299743151886 38.257 0.67579 38.257 38.037 38.712 0 31 18 2 0 0 0 0.17935 2 7080 7080;7125 39.95 8.6814 1 1790600 1269 4024 662 663 1523;1524 1523 -0.01659986241520528 AEIGQNISS 9 Unmodified _AEIGQNISS_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2326354980469 2 459.729989 917.445425 -0.30572 -0.00014055 1.5864 0.00072932 1.2807 0.00058877 459.73025921438773 40.787 0.63557 38.152 37.866 38.502 -2.6348 31 17 2 0 0 0 0.12505 2 7632 7577;7632 47.749 9.5731 1 3175700 1270 4024 662 663 1525;1526 1526 -0.01659986241520528 AEIGQNISS 9 Unmodified _AEIGQNISS_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.231689453125 2 459.729989 917.445425 -0.072714 -3.3429E-05 1.9598 0.00090099 1.8871 0.00086756 459.7301495691557 40.705 0.94946 38.165 37.78 38.73 -2.5398 43 26 2 0 0 0 0.10573 4 7335 7283;7289;7332;7335 53.833 37.088 1 2320200 1271 4024 662 663 1527;1528;1529;1530 1530 -0.01659986241520528 AEIGQNISS 9 Unmodified _AEIGQNISS_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23199462890625 2 459.729989 917.445425 0.07448 3.4241E-05 0.49796 0.00022893 0.57245 0.00026317 459.73005880080746 40.782 0.70155 38.292 38.006 38.708 -2.4896 43 19 4 0 0 0 0.12505 1 7300 7300 47.749 19.262 1 1714000 1272 4024 662 663 1531 1531 -0.01659986241520528 AEIHKTEL 8 Unmodified _AEIHKTEL_ 0 0 0 ENST00000421674.5_1_15:44177877-44211195:-|nuORF;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;ENSG00000171877|ENST00000417257|FRMD5 ENST00000421674.5_1_15:44177877-44211195:-|nuORF ENST00000421674.5_1_15:44177877-44211195:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1596374511719 3 314.174792 939.502546 NaN NaN NaN NaN NaN NaN NaN 105.86 1 101.48 100.98 101.98 -4.3764 0 0 0 0.21486 1 20297 20297 6.2058 1.6769 1 1273 6184 663 664 1532 1532 0.030374810348462233 AEIHKTEL 8 Unmodified _AEIHKTEL_ 0 0 0 ENST00000421674.5_1_15:44177877-44211195:-|nuORF;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;ENSG00000171877|ENST00000417257|FRMD5 ENST00000421674.5_1_15:44177877-44211195:-|nuORF ENST00000421674.5_1_15:44177877-44211195:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1745910644531 3 314.174792 939.502546 NaN NaN NaN NaN NaN NaN NaN 97.29 1 93.371 92.871 93.871 -3.9194 0 0 0 0.21486 1 18671 18671 3.2813 0.54611 1 1274 6184 663 664 1533 1533 0.030374810348462233 AEIINPKTA 9 Unmodified _AEIINPKTA_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;nc|ENSG00000075292|Q14966-5|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73773193359375 2 478.7742 955.533846 0.21047 0.00010077 0.075871 3.6325E-05 0.28634 0.00013709 478.7740671385207 44.226 0.79085 44.226 43.814 44.605 0 62 22 4 0 0 0 0.22356 1 8258 8258 57.249 24.463 1 6162400 1275 1515 664 665 1534 1534 0.0543005406894963 AEIINPKTA 9 Unmodified _AEIINPKTA_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;nc|ENSG00000075292|Q14966-5|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.736083984375 2 478.7742 955.533846 -0.036287 -1.7373E-05 0.19851 9.5043E-05 0.16223 7.767E-05 478.77426090654694 47.037 0.83086 44.197 43.764 44.595 -2.8409 57 23 3 0 0 0 0.25795 1 8851 8851 55.235 22.449 1 11206000 1276 1515 664 665 1535 1535 0.0543005406894963 AEIINPKTA 9 Unmodified _AEIINPKTA_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;nc|ENSG00000075292|Q14966-5|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7333068847656 2 478.7742 955.533846 -0.00083869 -4.0155E-07 0.40873 0.00019569 0.40789 0.00019529 478.77423220873993 47.112 0.89681 44.17 43.754 44.651 -2.9421 63 25 4 0 0 0 0.030811 4 8570 8556;8560;8569;8570 80.676 47.927 1 8507100 1277 1515 664 665 1536;1537;1538;1539 1539 0.0543005406894963 AEIKRLQEA 9 Unmodified _AEIKRLQEA_ 0 0 0 CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant;CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.53985595703125 3 353.204862 1056.59276 -0.47152 -0.00016654 1.2734 0.00044978 0.80191 0.00028324 353.2053747101537 27.682 0.39005 25.686 25.538 25.928 -1.9962 18 10 2 0 0 0 0.15889 1 4634 4634 22.736 5.6234 1 984010 1278 495 665 666 1540 1540 0.0667253036326656 AEIKRLQEA 9 Unmodified _AEIKRLQEA_ 0 0 0 CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant;CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 353.204862 1056.59276 0.6271 0.00022149 -0.78156 -0.00027605 -0.15446 -5.4554E-05 353.2048496159099 27.631 0.38291 25.849 25.665 26.048 -1.7821 0.10424 -0.0018747 NaN 22.736 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1100500 1279 495 665 666 0.0667253036326656 AEIKRLQEA 9 Unmodified _AEIKRLQEA_ 0 0 0 CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant;CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 353.204862 1056.59276 0.21655 7.6488E-05 0.95763 0.00033824 1.1742 0.00041473 353.20508273163006 27.456 0.4173 25.701 25.513 25.93 -1.7552 -0.044612 -3.187E-05 NaN 22.736 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1118400 1280 495 665 666 0.0667253036326656 AEIKVREA 8 Unmodified _AEIKVREA_ 0 0 0 nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1;EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant;EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;nc|ENSG00000049283|Q9H201-2|EPN3;ENST00000495155.5_1_17:19186396-19216987:+|nuORF;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000049283|ENST00000268933|EPN3;ENSG00000072134|ENST00000314728|EPN2;ENSG00000176177|ENST00000325157|ENTHD1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2290954589844 2 458.266542 914.51853 -0.078003 -3.5746E-05 0.39008 0.00017876 0.31208 0.00014301 458.2665746579367 23.817 0.41031 22.282 22.06 22.47 -1.5342 22 11 3 0 0 0 0.70928 1 3888 3888 13.042 0.51092 1 1990100 1281 1328 666 667 1541 1541 0.05785187271760606 AEIKVREA 8 Unmodified _AEIKVREA_ 0 0 0 nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1;EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant;EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;nc|ENSG00000049283|Q9H201-2|EPN3;ENST00000495155.5_1_17:19186396-19216987:+|nuORF;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000049283|ENST00000268933|EPN3;ENSG00000072134|ENST00000314728|EPN2;ENSG00000176177|ENST00000325157|ENTHD1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.266542 914.51853 0.26588 0.00012184 0.22022 0.00010092 0.4861 0.00022276 458.26649912129085 22.449 0.45415 22.449 22.189 22.643 0 0.13525 8.1337E-05 NaN 13.042 22 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2224800 1282 1328 666 667 0.05785187271760606 AEIKVREA 8 Unmodified _AEIKVREA_ 0 0 0 nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1;EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant;EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;nc|ENSG00000049283|Q9H201-2|EPN3;ENST00000495155.5_1_17:19186396-19216987:+|nuORF;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000049283|ENST00000268933|EPN3;ENSG00000072134|ENST00000314728|EPN2;ENSG00000176177|ENST00000325157|ENTHD1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.266542 914.51853 0.79572 0.00036465 -0.59465 -0.00027251 0.20107 9.2145E-05 458.2662204265013 23.874 0.48456 22.321 22.117 22.602 -1.5532 0.0075043 -0.00066552 NaN 13.042 23 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1616900 1283 1328 666 667 0.05785187271760606 AEIKVREA 8 Unmodified _AEIKVREA_ 0 0 0 nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1;EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant;EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;nc|ENSG00000049283|Q9H201-2|EPN3;ENST00000495155.5_1_17:19186396-19216987:+|nuORF;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000049283|ENST00000268933|EPN3;ENSG00000072134|ENST00000314728|EPN2;ENSG00000176177|ENST00000325157|ENTHD1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.266542 914.51853 -0.078003 -3.5746E-05 0.39008 0.00017876 0.31208 0.00014301 458.2665746579367 23.817 0.41031 22.282 22.06 22.47 -1.5342 -0.030793 0.00023702 NaN 13.042 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1990100 1284 1328 666 667 0.05785187271760606 AEIKVREA 8 Unmodified _AEIKVREA_ 0 0 0 nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1;EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant;EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;nc|ENSG00000049283|Q9H201-2|EPN3;ENST00000495155.5_1_17:19186396-19216987:+|nuORF;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000049283|ENST00000268933|EPN3;ENSG00000072134|ENST00000314728|EPN2;ENSG00000176177|ENST00000325157|ENTHD1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 458.266542 914.51853 -0.33034 -0.00015138 0.55979 0.00025653 0.22945 0.00010515 458.266740691866 24.055 0.45085 22.201 21.985 22.435 -1.8534 -0.11196 0.00039257 NaN 13.042 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1319500 1285 1328 666 667 0.05785187271760606 AEILPVDY 8 Unmodified _AEILPVDY_ 0 0 0 REV__tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1 REV__tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2435302734375 2 460.242201 918.469849 NaN NaN NaN NaN NaN NaN NaN 94.328 1 90.484 89.984 90.984 -3.844 0 0 0 0.22934 1 18095 18095 0.12286 0 1 + 1286 25033 667 668 1542 1542 0.0073527391199377234 AEILPVDY 8 Unmodified _AEILPVDY_ 0 0 0 REV__tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1 REV__tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2435302734375 2 460.242201 918.469849 NaN NaN NaN NaN NaN NaN NaN 94.337 1 90.493 89.993 90.993 -3.844 0 0 0 0.2074 1 18096 18096 19.439 5.5329 1 + 1287 25033 667 668 1543 1543 0.0073527391199377234 AEILSHVF 8 Unmodified _AEILSHVF_ 0 0 0 nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851|CASP10;CASP10|p.F397Hfs*7|1|0.3|ENSG00000003400|chr2:201209333-201209334|TT/-|frameshift_variant;CASP10|p.K392Nfs*26|1|0.1|ENSG00000003400|chr2:201209319-201209319|A/-|frameshift_variant;nc|ENSG00000003400|Q92851-2|CASP10;ENSG00000003400|ENST00000286186|CASP10 nc|ENSG00000003400|Q92851-5|CASP10 nc|ENSG00000003400|Q92851-5|CASP10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23736572265625 2 458.25036 914.486168 NaN NaN NaN NaN NaN NaN NaN 127.32 1 127.32 126.82 127.82 0 0 0 0 0.19298 1 25131 25131 36.506 18.133 1 1288 12203 668 669 1544 1544 0.025503998687554486 AEIMGKLLA 9 Oxidation (M) _AEIM(Oxidation (M))GKLLA_ AEIM(1)GKLLA AEIM(53)GKLLA 0 0 1 ENST00000355196.6_1_4:83821322-83821651:-|nuORF ENST00000355196.6_1_4:83821322-83821651:-|nuORF ENST00000355196.6_1_4:83821322-83821651:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77459716796875 2 481.272978 960.531403 -0.10922 -5.2565E-05 0.33155 0.00015957 0.22233 0.000107 481.2730663553379 71.607 0.70583 71.607 71.282 71.988 0 47 19 3 0 0 0 0.10699 1 13874 13874 53.404 26.52 1 5997700 1289 8951 669 670 1545 1545 109 0.04955882339652362 AEIMGKLLA 9 Oxidation (M) _AEIM(Oxidation (M))GKLLA_ AEIM(1)GKLLA AEIM(44)GKLLA 0 0 1 ENST00000355196.6_1_4:83821322-83821651:-|nuORF ENST00000355196.6_1_4:83821322-83821651:-|nuORF ENST00000355196.6_1_4:83821322-83821651:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7838439941406 2 481.272978 960.531403 -0.033167 -1.5962E-05 0.075042 3.6116E-05 0.041876 2.0154E-05 481.2730015929927 74.759 0.57011 71.395 71.127 71.698 -3.3643 27 15 2 0 0 0 0.15274 1 14605 14605 43.772 14.691 1 2350300 1290 8951 669 670 1546 1546 109 0.04955882339652362 AEINGTMNA 9 Unmodified _AEINGTMNA_ 0 0 0 nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2414245605469 2 460.710742 919.406931 -0.10541 -4.8562E-05 0.58303 0.00026861 0.47762 0.00022005 460.7110178576154 42.301 0.91438 39.65 39.178 40.093 -2.651 42 25 2 0 0 0 0.10043 1 7632 7632 18.614 6.8647 1 4703800 1291 3353 670 671 1547 1547 -0.05599615147696113 AEINGTMNA 9 Unmodified _AEINGTMNA_ 0 0 0 nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2391357421875 2 460.710742 919.406931 0.0074281 3.4222E-06 0.12892 5.9394E-05 0.13635 6.2816E-05 460.7108265235996 42.26 1.0263 39.655 39.22 40.246 -2.606 41 28 2 0 0 0 0.25702 1 7582 7582 34.102 7.2188 1 2495100 1292 3353 670 671 1548 1548 -0.05599615147696113 AEIPAGPGREP 11 Unmodified _AEIPAGPGREP_ 0 0 0 ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENST00000486701.1_1_2:27663271-27663376:+|nuORF ENSG00000115216|ENST00000379852|NRBP1 ENSG00000115216|ENST00000379852|NRBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7879028320312 2 547.285463 1092.55637 0.58308 0.00031911 0.60773 0.0003326 1.1908 0.00065172 547.2857402156453 49.217 1.7117 49.217 48.454 50.166 0 167 48 5 0 0 0 0.010987 6 9285 9233;9285;9332;9418;9446;9460 132.57 80.937 1 68578000 1293 2830 671 672 1549;1550;1551;1552;1553;1554 1550 0.01379653466574382 AEIPAGPGREP 11 Unmodified _AEIPAGPGREP_ 0 0 0 ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENST00000486701.1_1_2:27663271-27663376:+|nuORF ENSG00000115216|ENST00000379852|NRBP1 ENSG00000115216|ENST00000379852|NRBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7877807617188 2 547.285463 1092.55637 0.00096923 5.3045E-07 1.2873 0.00070454 1.2883 0.00070507 547.2860831930944 52.46 1.6897 49.576 48.695 50.385 -2.8837 197 48 6 0 0 0 0.0086371 5 9943 9943;9992;10041;10084;10133 103.69 66.616 1 85085000 1294 2830 671 672 1555;1556;1557;1558;1559 1555 0.01379653466574382 AEIPAGPGREP 11 Unmodified _AEIPAGPGREP_ 0 0 0 ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENST00000486701.1_1_2:27663271-27663376:+|nuORF ENSG00000115216|ENST00000379852|NRBP1 ENSG00000115216|ENST00000379852|NRBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.787841796875 2 547.285463 1092.55637 0.074583 4.0818E-05 1.1403 0.00062408 1.2149 0.0006649 547.2860361827447 52.631 1.8315 49.543 48.742 50.573 -3.0876 168 51 5 0 0 0 0.010987 4 9655 9655;9694;9735;9780 132.57 77.332 1 78674000 1295 2830 671 672 1560;1561;1562;1563 1560 0.01379653466574382 AEIPAGPGREP 11 Unmodified _AEIPAGPGREP_ 0 0 0 ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENST00000486701.1_1_2:27663271-27663376:+|nuORF ENSG00000115216|ENST00000379852|NRBP1 ENSG00000115216|ENST00000379852|NRBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.787841796875 2 547.285463 1092.55637 0.025394 1.3898E-05 1.2351 0.00067594 1.2605 0.00068983 547.286044640254 52.697 1.9297 49.602 48.649 50.579 -3.0954 188 55 5 0 0 0 0.019868 6 9672 9622;9672;9721;9772;9819;9842 128.87 77.24 1 64776000 1296 2830 671 672 1564;1565;1566;1567;1568;1569 1565 0.01379653466574382 AEIPGQPVP 9 Unmodified _AEIPGQPVP_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76776123046875 2 454.247818 906.481082 -0.053342 -2.4231E-05 0.17391 7.8997E-05 0.12056 5.4766E-05 454.24781762219067 80.795 1.1811 76.956 76.532 77.713 -3.8392 64 33 3 0 0 0 0.42844 1 15438 15438 24.021 8.1734 1 2376700 1297 6931 672 673 1570 1570 0.024100960061332444 AEIPGQPVP 9 Unmodified _AEIPGQPVP_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 454.247818 906.481082 -0.081327 -3.6942E-05 0.098542 4.4762E-05 0.017215 7.8198E-06 454.2477827328438 80.508 1.121 76.998 76.543 77.664 -3.5102 0.07858 5.1394E-05 NaN 24.021 59 31 2 NaN NaN NaN NaN 0 NaN NaN 0 2797800 1298 6931 672 673 0.024100960061332444 AEIPGQPVP 9 Unmodified _AEIPGQPVP_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 454.247818 906.481082 -0.23244 -0.00010559 0.20401 9.2673E-05 -0.028429 -1.2914E-05 454.2478196760065 80.735 1.0425 77.047 76.618 77.66 -3.6879 0.1275 0.00014721 NaN 24.021 66 29 3 NaN NaN NaN NaN 0 NaN NaN 0 3762900 1299 6931 672 673 0.024100960061332444 AEIPQIFDA 9 Unmodified _AEIPQIFDA_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 503.2519836425781 2 502.258382 1002.50221 0.1619 8.1315E-05 0.28009 0.00014068 0.44199 0.00022199 502.25840377343104 161.03 0.81223 156.24 155.82 156.63 -4.7952 60 22 3 0 0 0 0.050608 1 32041 32041 81.552 39.32 1 10731000 1300 1645 673 674 1571 1571 0.0010606131498889226 AEIPQIFDA 9 Unmodified _AEIPQIFDA_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 502.258382 1002.50221 0.20359 0.00010226 0.27685 0.00013905 0.48044 0.0002413 502.25837354604084 155.88 0.69061 155.88 155.52 156.21 0 -0.17977 -1.8896E-06 NaN 81.552 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 11427000 1301 1645 673 674 0.0010606131498889226 AEIQAKARQA 10 Unmodified _AEIQAKARQA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7958984375 2 543.306729 1084.59891 0.22908 0.00012446 -0.2277 -0.00012371 0.0013841 7.5201E-07 543.3064342138427 14.918 0.21226 14.918 14.772 14.984 0 10 5 3 0 0 0 0.74994 1 2230 2230 5.7319 0.43497 1 716260 1302 6567 674 675 1572 1572 0.059990485947992056 AEIQAKARQA 10 Unmodified _AEIQAKARQA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7966918945312 2 543.306729 1084.59891 -1.4447 -0.00078492 1.3608 0.00073936 -0.083859 -4.5561E-05 543.3073094069766 15.974 0.13541 14.621 14.512 14.648 -1.3534 5 3 2 0 0 0 0.88533 1 2222 2222 13.042 3.6593 1 224460 1303 6567 674 675 1573 1573 0.059990485947992056 AEIQAKARQA 10 Unmodified _AEIQAKARQA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.306729 1084.59891 0.22908 0.00012446 -0.2277 -0.00012371 0.0013841 7.5201E-07 543.3064342138427 14.918 0.21226 14.918 14.772 14.984 0 0.14875 -0.00084708 NaN 5.7319 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 716260 1304 6567 674 675 0.059990485947992056 AEIQFADY 8 Unmodified _AEIQFADY_ 0 0 0 nc|ENSG00000083123|P21953-2|BCKDHB;ENSG00000083123|ENST00000320393|BCKDHB nc|ENSG00000083123|P21953-2|BCKDHB nc|ENSG00000083123|P21953-2|BCKDHB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7229919433594 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 82.327 1 82.327 81.827 82.827 0 0 0 0 0.21323 1 16038 16038 14.582 1.0738 1 1305 1649 675 676 1574 1574 -0.050784871274800025 AEIQGNVKV 9 Unmodified _AEIQGNVKV_ 0 0 0 ENSG00000135951|ENST00000393483|TSGA10;TSGA10|p.K280Nfs*14|1|0.15|ENSG00000135951|chr2:99078701-99078701|T/-|frameshift_variant;nc|ENSG00000135951|Q9BZW7-2|TSGA10;ENST00000478090.5_1_2:99689501-99743552:-|nuORF ENSG00000135951|ENST00000393483|TSGA10 ENSG00000135951|ENST00000393483|TSGA10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72344970703125 2 479.271824 956.529095 -0.141 -6.7575E-05 -1.8459 -0.0008847 -1.9869 -0.00095228 479.2710122194724 51.075 0.20735 48.193 48.141 48.348 -2.8824 7 5 2 0 0 0 0.71527 1 9717 9717 25.399 2.2509 1 634290 1306 3969 676 677 1575 1575 0.04909169926202139 AEIQGVIDA 9 Unmodified _AEIQGVIDA_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22760009765625 2 458.242732 914.470912 -0.10521 -4.821E-05 0.16201 7.4238E-05 0.0568 2.6028E-05 458.2427716676065 92.973 1.2064 88.982 88.449 89.656 -3.9907 113 34 5 0 0 0 0.033243 1 18146 18146 67.187 55.188 1 116410000 1307 6952 677 678 1576 1576 0.010254882809022092 AEIQGVIDA 9 Unmodified _AEIQGVIDA_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.24212646484375 2 458.242732 914.470912 -0.070457 -3.2287E-05 0.26471 0.0001213 0.19425 8.9016E-05 458.24284147664656 100.29 0.28445 96.136 95.869 96.153 -4.1594 10 7 2 0 0 0 0.34411 1 19699 19699 29.082 8.628 1 2332200 1308 6952 677 678 1577 1577 0.010254882809022092 AEIQGVIDA 9 Unmodified _AEIQGVIDA_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2331848144531 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 93.743 1 89.753 89.253 90.253 -3.9907 0 0 0 0.18489 1 18365 18365 19.626 17.934 1 1309 6952 677 678 1578 1578 0.010254882809022092 AEIQGVIDA 9 Unmodified _AEIQGVIDA_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2303466796875 2 458.242732 914.470912 0.18338 8.403E-05 -0.10219 -4.6827E-05 0.081188 3.7204E-05 458.242665784814 93.21 1.4034 89.066 88.557 89.96 -4.1435 116 40 5 0 0 0 0.045737 4 17709 17701;17709;17894;17896 67.187 60.7 1 108010000 1310 6952 677 678 1579;1580;1581;1582 1580 0.010254882809022092 AEIQGVIDA 9 Unmodified _AEIQGVIDA_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2337341308594 2 458.242732 914.470912 0.070743 3.2418E-05 -0.04549 -2.0846E-05 0.025253 1.1572E-05 458.2426683325484 93.02 1.3757 89.176 88.65 90.026 -3.844 115 39 4 0 0 0 0.10919 1 17926 17926 42.232 27.246 1 105910000 1311 6952 677 678 1583 1583 0.010254882809022092 AEIQIRIEA 9 Unmodified _AEIQIRIEA_ 0 0 0 ENST00000590265.5_1_19:1242319-1244433:+|nuORF;ENSG00000099624|ENST00000215375|ATP5F1D ENST00000590265.5_1_19:1242319-1244433:+|nuORF ENST00000590265.5_1_19:1242319-1244433:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2685546875 2 521.798206 1041.58186 0.26725 0.00013945 -0.025178 -1.3138E-05 0.24208 0.00012632 521.7979770986803 110.18 0.82285 110.18 109.68 110.51 0 32 23 2 0 0 0 0.15889 3 21677 21637;21677;21707 30.703 25.988 1 1762600 1312 1896 678 679 1584;1585;1586 1585 0.0627312798899311 AEIQIRIEA 9 Unmodified _AEIQIRIEA_ 0 0 0 ENST00000590265.5_1_19:1242319-1244433:+|nuORF;ENSG00000099624|ENST00000215375|ATP5F1D ENST00000590265.5_1_19:1242319-1244433:+|nuORF ENST00000590265.5_1_19:1242319-1244433:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.265380859375 2 521.798206 1041.58186 0.59772 0.00031189 -0.20078 -0.00010477 0.39694 0.00020712 521.7980076215093 114.07 1.0789 109.76 109.27 110.34 -4.3136 77 30 4 0 0 0 0.35556 1 22061 22061 14.957 12.326 1 3903700 1313 1896 678 679 1587 1587 0.0627312798899311 AEIRDKNFNA 10 Unmodified _AEIRDKNFNA_ 0 0 0 VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant;VPS33A|p.R460Qfs*17|2|0.28|ENSG00000139719|chr12:122235849-122235850|-/C|frameshift_variant;VPS33A|p.G459Afs*86|7|0.14|ENSG00000139719|chr12:122235850-122235850|C/-|frameshift_variant;VPS33A|p.G552Afs*2|1|0.26|ENSG00000139719|chr12:122232382-122232382|C/-|frameshift_variant;ENSG00000139719|ENST00000267199|VPS33A VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2572021484375 2 589.301644 1176.58874 0.38304 0.00022573 0.053952 3.1794E-05 0.43699 0.00025752 589.3016995391023 29.172 0.34467 29.172 28.985 29.329 0 20 9 3 0 0 0 0.5575 1 5187 5187 21.537 11.463 1 2399600 1314 4262 679 680 1588 1588 0.0075044086956950196 AEIRDKNFNA 10 Unmodified _AEIRDKNFNA_ 0 0 0 VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant;VPS33A|p.R460Qfs*17|2|0.28|ENSG00000139719|chr12:122235849-122235850|-/C|frameshift_variant;VPS33A|p.G459Afs*86|7|0.14|ENSG00000139719|chr12:122235850-122235850|C/-|frameshift_variant;VPS33A|p.G552Afs*2|1|0.26|ENSG00000139719|chr12:122232382-122232382|C/-|frameshift_variant;ENSG00000139719|ENST00000267199|VPS33A VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2908935546875 3 393.203522 1176.58874 -0.028315 -1.1133E-05 0.030466 1.198E-05 0.0021519 8.4614E-07 393.20353904293216 29.16 0.48412 29.16 28.914 29.398 0 37 13 4 0 0 0 0.91149 1 5209 5209 0.62683 0 1 7611200 1315 4262 679 680 1589 1589 0.0075044086956950196 AEIRDKNFNA 10 Unmodified _AEIRDKNFNA_ 0 0 0 VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant;VPS33A|p.R460Qfs*17|2|0.28|ENSG00000139719|chr12:122235849-122235850|-/C|frameshift_variant;VPS33A|p.G459Afs*86|7|0.14|ENSG00000139719|chr12:122235850-122235850|C/-|frameshift_variant;VPS33A|p.G552Afs*2|1|0.26|ENSG00000139719|chr12:122232382-122232382|C/-|frameshift_variant;ENSG00000139719|ENST00000267199|VPS33A VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2593994140625 2 589.301644 1176.58874 0.7569 0.00044604 0.10808 6.3694E-05 0.86499 0.00050974 589.3016328904174 31.36 0.34786 29.13 28.92 29.268 -2.2305 23 9 3 0 0 0 0.744 1 5659 5659 6.7232 0.51738 1 1625300 1316 4262 679 680 1590 1590 0.0075044086956950196 AEIRDKNFNA 10 Unmodified _AEIRDKNFNA_ 0 0 0 VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant;VPS33A|p.R460Qfs*17|2|0.28|ENSG00000139719|chr12:122235849-122235850|-/C|frameshift_variant;VPS33A|p.G459Afs*86|7|0.14|ENSG00000139719|chr12:122235850-122235850|C/-|frameshift_variant;VPS33A|p.G552Afs*2|1|0.26|ENSG00000139719|chr12:122232382-122232382|C/-|frameshift_variant;ENSG00000139719|ENST00000267199|VPS33A VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 393.203522 1176.58874 0.1255 4.9346E-05 -0.11285 -4.4372E-05 0.012652 4.9747E-06 393.20342970488247 31.331 0.45011 29.137 28.888 29.338 -2.1935 0.00014212 -2.3302E-05 NaN 0.62683 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 6584900 1317 4262 679 680 0.0075044086956950196 AEIRDKNFNA 10 Unmodified _AEIRDKNFNA_ 0 0 0 VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant;VPS33A|p.R460Qfs*17|2|0.28|ENSG00000139719|chr12:122235849-122235850|-/C|frameshift_variant;VPS33A|p.G459Afs*86|7|0.14|ENSG00000139719|chr12:122235850-122235850|C/-|frameshift_variant;VPS33A|p.G552Afs*2|1|0.26|ENSG00000139719|chr12:122232382-122232382|C/-|frameshift_variant;ENSG00000139719|ENST00000267199|VPS33A VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.301644 1176.58874 0.70109 0.00041315 -0.196 -0.0001155 0.50508 0.00029765 589.3014791073422 31.173 0.38412 29.147 28.952 29.336 -2.0264 0.0039392 -0.00017119 NaN 21.537 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2950700 1318 4262 679 680 0.0075044086956950196 AEIRDKNFNA 10 Unmodified _AEIRDKNFNA_ 0 0 0 VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant;VPS33A|p.R460Qfs*17|2|0.28|ENSG00000139719|chr12:122235849-122235850|-/C|frameshift_variant;VPS33A|p.G459Afs*86|7|0.14|ENSG00000139719|chr12:122235850-122235850|C/-|frameshift_variant;VPS33A|p.G552Afs*2|1|0.26|ENSG00000139719|chr12:122232382-122232382|C/-|frameshift_variant;ENSG00000139719|ENST00000267199|VPS33A VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 589.301644 1176.58874 0.51061 0.00030091 -0.083223 -4.9043E-05 0.42739 0.00025186 589.3016039541658 31.271 0.45751 29.122 28.951 29.409 -2.1483 -0.020302 -3.8271E-05 NaN 21.537 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1260700 1319 4262 679 680 0.0075044086956950196 AEIRDKNFNA 10 Unmodified _AEIRDKNFNA_ 0 0 0 VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant;VPS33A|p.R460Qfs*17|2|0.28|ENSG00000139719|chr12:122235849-122235850|-/C|frameshift_variant;VPS33A|p.G459Afs*86|7|0.14|ENSG00000139719|chr12:122235850-122235850|C/-|frameshift_variant;VPS33A|p.G552Afs*2|1|0.26|ENSG00000139719|chr12:122232382-122232382|C/-|frameshift_variant;ENSG00000139719|ENST00000267199|VPS33A VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 393.203522 1176.58874 -0.09564 -3.7606E-05 0.062397 2.4535E-05 -0.033244 -1.3072E-05 393.20354321371457 31.287 0.63195 29.139 28.882 29.514 -2.1483 0.001646 0.00018342 NaN 0.62683 51 17 4 NaN NaN NaN NaN 0 NaN NaN 0 4902600 1320 4262 679 680 0.0075044086956950196 AEIRMSAP 8 Unmodified _AEIRMSAP_ 0 0 0 REV__ENST00000508743.1_1_17:46969858-46986323:-|nuORF REV__ENST00000508743.1_1_17:46969858-46986323:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2176208496094 2 437.726195 873.437837 -0.23784 -0.00010411 0.27021 0.00011828 0.032373 1.417E-05 437.726290761174 50.782 0.48999 47.731 47.398 47.888 -3.0517 24 13 2 0 0 0 0.64118 1 9324 9324 37.974 0 1 2025500 + 1321 22518 680 681 1591 1591 -0.003944170427871541 AEIRSSLPG 9 Unmodified _AEIRSSLPG_ 0 0 0 REV__ENST00000591391.5_2_19:37838733-37853032:+|nuORF REV__ENST00000591391.5_2_19:37838733-37853032:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.256591796875 2 465.256174 928.497795 -0.015016 -6.9861E-06 -0.80737 -0.00037563 -0.82238 -0.00038262 465.2557515606762 49.222 0.792 46.223 45.791 46.583 -2.999 72 22 4 0 0 0 0.34411 1 8933 8933 29.082 4.0906 1 18066000 + 1322 23333 681 682 1592 1592 0.030685968921034146 AEIRTLHFAA 10 Unmodified _AEIRTLHFAA_ 0 0 0 ENST00000504405.5_1_1:179112070-179112142:-|nuORF ENST00000504405.5_1_1:179112070-179112142:-|nuORF ENST00000504405.5_1_1:179112070-179112142:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 376.48797607421875 3 376.876857 1127.60874 -0.19033 -7.1732E-05 0.025551 9.6297E-06 -0.16478 -6.2103E-05 376.87686241722395 86.144 0.87531 86.144 85.754 86.629 0 71 24 4 0 0 0 1.0699 1 16882 16882 25.997 24.783 1 17047000 1323 10654 682 683 1593 1593 0.050042366001889604 AEIRTLHFAA 10 Unmodified _AEIRTLHFAA_ 0 0 0 ENST00000504405.5_1_1:179112070-179112142:-|nuORF ENST00000504405.5_1_1:179112070-179112142:-|nuORF ENST00000504405.5_1_1:179112070-179112142:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 376.876857 1127.60874 -0.3086 -0.0001163 0.056287 2.1213E-05 -0.25231 -9.5089E-05 376.87691872354236 89.7 0.71864 85.841 85.508 86.226 -3.8595 -0.061347 0.00015173 NaN 25.997 57 19 4 NaN NaN NaN NaN 0 NaN NaN 0 6033300 1324 10654 682 683 0.050042366001889604 AEIRTLHFAA 10 Unmodified _AEIRTLHFAA_ 0 0 0 ENST00000504405.5_1_1:179112070-179112142:-|nuORF ENST00000504405.5_1_1:179112070-179112142:-|nuORF ENST00000504405.5_1_1:179112070-179112142:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 376.876857 1127.60874 0.37791 0.00014242 -0.6816 -0.00025688 -0.30369 -0.00011445 376.8766584497582 89.865 0.68102 85.82 85.519 86.2 -4.0443 -0.081974 -0.00068254 NaN 25.997 55 18 4 NaN NaN NaN NaN 0 NaN NaN 0 5866800 1325 10654 682 683 0.050042366001889604 AEIRTLHFAA 10 Unmodified _AEIRTLHFAA_ 0 0 0 ENST00000504405.5_1_1:179112070-179112142:-|nuORF ENST00000504405.5_1_1:179112070-179112142:-|nuORF ENST00000504405.5_1_1:179112070-179112142:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 376.876857 1127.60874 -0.49609 -0.00018696 0.2349 8.8528E-05 -0.26119 -9.8437E-05 376.8769797591207 89.581 0.84434 85.804 85.414 86.259 -3.7779 -0.098678 0.00035368 NaN 25.997 66 23 4 NaN NaN NaN NaN 0 NaN NaN 0 5719400 1326 10654 682 683 0.050042366001889604 AEISEFAPP 9 Unmodified _AEISEFAPP_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2390441894531 2 480.737283 959.460012 0.050048 2.406E-05 0.21863 0.0001051 0.26867 0.00012916 480.7374587206135 109.91 0.54607 109.91 109.75 110.29 0 21 15 2 0 0 0 0.15889 1 21643 21643 22.736 10.496 1 1393400 1327 1659 683 684 1594 1594 -0.021339140933832823 AEISEFAPP 9 Unmodified _AEISEFAPP_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.737283 959.460012 0.199 9.5668E-05 0.34471 0.00016572 0.54371 0.00026138 480.7374180021768 114.85 0.67477 110.3 109.87 110.55 -4.555 0.1927 6.0309E-05 NaN 22.736 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1848800 1328 1659 683 684 -0.021339140933832823 AEISFTVWL 9 Unmodified _AEISFTVWL_ 0 0 0 ENST00000474900.5_1_11:132177611-132182586:+|nuORF ENST00000474900.5_1_11:132177611-132182586:+|nuORF ENST00000474900.5_1_11:132177611-132182586:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.283203125 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 76.77 1 76.77 76.27 77.27 0 0 0 0 0.23508 1 14918 14918 11.64 0.81637 1 1329 10269 684 685 1595 1595 0.024552247287601858 AEISFVDSL 9 Unmodified _AEISFVDSL_ 0 0 0 nc|ENSG00000137513|Q96I59-2|NARS2;ENSG00000137513|ENST00000281038|NARS2 nc|ENSG00000137513|Q96I59-2|NARS2 nc|ENSG00000137513|Q96I59-2|NARS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26776123046875 2 490.75039 979.486227 0.43293 0.00021246 0.85333 0.00041877 1.2863 0.00063123 490.75091665022984 116.97 0.24195 112.39 112.3 112.54 -4.5815 9 6 2 0 0 0 0.58699 1 22438 22438 19.257 1.1106 1 641470 1330 4090 685 686 1596 1596 -0.004336449219067617 AEISHHISS 9 Unmodified _AEISHHISS_ 0 0 0 ENST00000546575.1_1_12:54852895-54857111:-|nuORF;ENST00000552395.5_1_12:54852895-54867341:-|nuORF;ENSG00000170627|ENST00000305879|GTSF1 ENST00000546575.1_1_12:54852895-54857111:-|nuORF ENST00000546575.1_1_12:54852895-54857111:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25543212890625 2 490.743431 979.472308 0.11137 5.4653E-05 -0.15162 -7.4407E-05 -0.040254 -1.9754E-05 490.7434191795565 16.762 0.73383 16.762 16.543 17.277 0 59 20 5 0 0 0 0.061087 1 2629 2629 81.89 47.788 1 84288000 1331 6087 686 687 1597 1597 -0.01824877630338051 AEISHHISS 9 Unmodified _AEISHHISS_ 0 0 0 ENST00000546575.1_1_12:54852895-54857111:-|nuORF;ENST00000552395.5_1_12:54852895-54867341:-|nuORF;ENSG00000170627|ENST00000305879|GTSF1 ENST00000546575.1_1_12:54852895-54857111:-|nuORF ENST00000546575.1_1_12:54852895-54857111:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25537109375 2 490.743431 979.472308 -0.028845 -1.4155E-05 -0.055914 -2.744E-05 -0.084759 -4.1595E-05 490.7434727035264 17.978 0.93604 16.667 16.066 17.002 -1.3109 55 26 4 0 0 0 0.27865 1 2885 2885 49.933 23.049 1 76007000 1332 6087 686 687 1598 1598 -0.01824877630338051 AEISHHISS 9 Unmodified _AEISHHISS_ 0 0 0 ENST00000546575.1_1_12:54852895-54857111:-|nuORF;ENST00000552395.5_1_12:54852895-54867341:-|nuORF;ENSG00000170627|ENST00000305879|GTSF1 ENST00000546575.1_1_12:54852895-54857111:-|nuORF ENST00000546575.1_1_12:54852895-54857111:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2554626464844 2 490.743431 979.472308 -0.33211 -0.00016298 0.3285 0.00016121 -0.0036083 -1.7708E-06 490.7436331896019 17.918 0.57809 16.645 16.452 17.031 -1.2722 54 16 5 0 0 0 0.47479 1 2687 2687 30.637 19.813 1 61791000 1333 6087 686 687 1599 1599 -0.01824877630338051 AEISKRLGRRW 11 Unmodified _AEISKRLGRRW_ 0 0 0 ENSG00000177732|ENST00000342665|SOX12 ENSG00000177732|ENST00000342665|SOX12 ENSG00000177732|ENST00000342665|SOX12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.238525390625 3 457.93711 1370.7895 NaN NaN NaN NaN NaN NaN NaN 109.21 1 105.03 104.53 105.53 -4.1826 0 0 0 0.23698 1 21017 21017 1.2148 0.10508 1 1334 6536 687 688 1600 1600 0.1189375497688161 AEISRIQY 8 Unmodified _AEISRIQY_ 0 0 0 nc|ENSG00000168958|Q9GZY8-4|MFF;nc|ENSG00000168958|Q9GZY8-5|MFF;nc|ENSG00000168958|Q9GZY8-3|MFF;ENSG00000168958|ENST00000304593|MFF;nc|ENSG00000168958|Q9GZY8|MFF nc|ENSG00000168958|Q9GZY8-4|MFF nc|ENSG00000168958|Q9GZY8-4|MFF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26531982421875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 79.315 1 79.315 78.815 79.815 0 0 0 0 0.21323 1 15434 15434 14.582 0 1 1335 5954 688 689 1601 1601 0.02332883409144415 AEISRIQY 8 Unmodified _AEISRIQY_ 0 0 0 nc|ENSG00000168958|Q9GZY8-4|MFF;nc|ENSG00000168958|Q9GZY8-5|MFF;nc|ENSG00000168958|Q9GZY8-3|MFF;ENSG00000168958|ENST00000304593|MFF;nc|ENSG00000168958|Q9GZY8|MFF nc|ENSG00000168958|Q9GZY8-4|MFF nc|ENSG00000168958|Q9GZY8-4|MFF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2651062011719 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 55.763 1 52.879 52.379 53.379 -2.8837 0 0 0 0.21486 1 10675 10675 9.3474 0 1 1336 5954 688 689 1602 1602 0.02332883409144415 AEISRIQY 8 Unmodified _AEISRIQY_ 0 0 0 nc|ENSG00000168958|Q9GZY8-4|MFF;nc|ENSG00000168958|Q9GZY8-5|MFF;nc|ENSG00000168958|Q9GZY8-3|MFF;ENSG00000168958|ENST00000304593|MFF;nc|ENSG00000168958|Q9GZY8|MFF nc|ENSG00000168958|Q9GZY8-4|MFF nc|ENSG00000168958|Q9GZY8-4|MFF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2641296386719 2 490.263999 978.513445 0.22559 0.0001106 0.017622 8.6395E-06 0.24321 0.00011924 490.26405705337817 83.605 0.61133 79.731 79.466 80.077 -3.8736 24 16 2 0 0 0 0.58432 1 15946 15946 23.148 0 1 1851500 1337 5954 688 689 1603 1603 0.02332883409144415 AEITKVGG 8 Unmodified _AEITKVGG_ 0 0 0 REV__ENST00000511535.1_1_4:5823489-5889136:-|nuORF REV__ENST00000511535.1_1_4:5823489-5889136:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.72186279296875 2 387.721436 773.428318 -0.092452 -3.5846E-05 0.44564 0.00017278 0.35319 0.00013694 387.7215178713328 33.216 0.73621 33.216 32.954 33.69 0 32 20 2 0 0 0 8448 1 6023 6023 1.7423 1.0609 1 1096100 + 1338 14294 689 690 1604 1604 0.032541379433382644 AEITNGNAVA 10 Unmodified _AEITNGNAVA_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2458190917969 2 480.243264 958.471974 -0.35275 -0.0001694 0.24125 0.00011586 -0.1115 -5.3546E-05 480.2434230474601 37.482 1.0741 35.014 34.331 35.405 -2.4688 72 30 3 0 0 0 0.4942 1 6938 6938 24.991 6.8446 1 4926600 1339 1641 690 691 1605 1605 -0.008922973501853448 AEITWHGNLY 10 Unmodified _AEITWHGNLY_ 0 0 0 REV__PAPLN|p.P1073Qfs*32|2|0.31|ENSG00000100767|chr14:73265458-73265458|C/-|frameshift_variant REV__PAPLN|p.P1073Qfs*32|2|0.31|ENSG00000100767|chr14:73265458-73265458|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2954711914062 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 108.22 1 103.9 103.4 104.4 -4.32 0 0 0 0.22588 1 21321 21321 6.7232 0.51738 1 + 1340 14738 691 692 1606 1606 -0.021160600163739218 AEIVLKGQR 9 Unmodified _AEIVLKGQR_ 0 0 0 ENSG00000133858|ENST00000378743|ZFC3H1;ENST00000550963.1_1_12:72004384-72005014:-|nuORF;ENST00000552994.5_1_12:72004210-72005014:-|nuORF ENSG00000133858|ENST00000378743|ZFC3H1 ENSG00000133858|ENST00000378743|ZFC3H1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.8619079589844 3 338.541586 1012.60293 -0.2991 -0.00010126 0.14513 4.9132E-05 -0.15397 -5.2127E-05 338.54158835052743 44.819 0.81475 42.029 41.605 42.42 -2.79 67 22 4 0 0 0 0.5428 1 8407 8407 0.073264 0 1 9376400 1341 3818 692 693 1607 1607 0.09713138088534379 AEIYRGTVA 9 Unmodified _AEIYRGTVA_ 0 0 0 REV__ENSG00000215915|ENST00000378785|ATAD3C REV__ENSG00000215915|ENST00000378785|ATAD3C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27301025390625 2 490.263999 978.513445 0.1495 7.3296E-05 -1.8348 -0.00089956 -1.6853 -0.00082626 490.2630983643508 54.092 0.34619 50.957 50.698 51.044 -3.1352 20 9 3 0 0 0 0.42844 1 9979 9979 24.021 3.5669 1 19687000 + 1342 19698 693 694 1608 1608 0.023328834091330464 AEIYWTLIG 9 Unmodified _AEIYWTLIG_ 0 0 0 REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2830810546875 2 533.2844 1064.55425 0.46978 0.00025053 -3.2811 -0.0017498 -2.8113 -0.0014992 533.7845601421874 103.37 0.51361 103.37 103.07 103.58 0 34 14 3 0 0 0 0.57447 1 20293 20293 14.838 0.93222 1 1966100 + 1343 12885 694 695 1609 1609 0.024552247287601858 AEKAASESL 9 Unmodified _AEKAASESL_ 0 0 0 nc|ENSG00000116218|Q9NP85-2|NPHS2;ENSG00000116218|ENST00000367615|NPHS2 nc|ENSG00000116218|Q9NP85-2|NPHS2 nc|ENSG00000116218|Q9NP85-2|NPHS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7521057128906 2 453.232364 904.450176 0.26112 0.00011835 -0.061133 -2.7708E-05 0.19999 9.0641E-05 453.23232222328437 32.17 0.7335 32.17 32.047 32.78 0 26 20 2 0 0 0 0.2213 1 5838 5838 0.87518 0 1 1196600 1344 2917 695 696 1610 1610 -0.005871020987683551 AEKAASESL 9 Unmodified _AEKAASESL_ 0 0 0 nc|ENSG00000116218|Q9NP85-2|NPHS2;ENSG00000116218|ENST00000367615|NPHS2 nc|ENSG00000116218|Q9NP85-2|NPHS2 nc|ENSG00000116218|Q9NP85-2|NPHS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.232364 904.450176 0.31124 0.00014107 -0.41351 -0.00018742 -0.10227 -4.6352E-05 453.2321249333087 34.593 0.4593 32.331 32.076 32.535 -2.2616 0.082822 -0.0003238 NaN 0.87518 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 556360 1345 2917 695 696 -0.005871020987683551 AEKAFVSV 8 Unmodified _AEKAFVSV_ 0 0 0 ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENST00000502426.5_1_17:48736553-48755440:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.23870849609375 2 425.737086 849.459619 -0.27551 -0.00011729 0.32101 0.00013666 0.045499 1.9371E-05 425.73722105793894 72.375 1.4625 69.064 68.6 70.062 -3.3107 133 40 5 0 0 0 0.14361 1 14099 14099 92.653 44.307 1 261010000 1346 2497 696 697 1611 1611 0.028867109774296296 AEKAFVSV 8 Unmodified _AEKAFVSV_ 0 0 0 ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENST00000502426.5_1_17:48736553-48755440:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.238525390625 2 425.737086 849.459619 0.23276 9.9095E-05 -0.16552 -7.047E-05 0.067237 2.8625E-05 425.7370009385671 72.667 1.8086 69.04 68.552 70.36 -3.6275 139 50 5 0 0 0 0.31943 1 13734 13734 62.573 5.1013 1 177170000 1347 2497 696 697 1612 1612 0.028867109774296296 AEKAFVSV 8 Unmodified _AEKAFVSV_ 0 0 0 ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENST00000502426.5_1_17:48736553-48755440:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2384033203125 2 425.737086 849.459619 0.09764 4.1569E-05 0.028335 1.2063E-05 0.12598 5.3632E-05 425.7370905921705 72.68 1.8814 69.142 68.536 70.418 -3.5385 148 53 5 0 0 0 0.14361 1 13802 13802 92.653 25.309 1 222050000 1348 2497 696 697 1613 1613 0.028867109774296296 AEKAFVSV 8 Unmodified _AEKAFVSV_ 0 0 0 ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENST00000502426.5_1_17:48736553-48755440:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 425.737086 849.459619 -0.16516 -7.0314E-05 0.52261 0.00022249 0.35745 0.00015218 425.7372623240849 69.364 1.2396 69.364 68.931 70.171 0 0.14998 0.00010303 NaN 92.653 104 34 4 NaN NaN NaN NaN 0 NaN NaN 0 134560000 1349 2497 696 697 0.028867109774296296 AEKAMTALA 9 Unmodified _AEKAMTALA_ 0 0 0 ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1 ENSG00000240682|ENST00000393295|ISY1 ENSG00000240682|ENST00000393295|ISY1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7590637207031 2 453.241678 904.468803 -0.038836 -1.7602E-05 -0.18991 -8.6077E-05 -0.22875 -0.00010368 453.24179911794295 48.085 0.45784 45.143 44.899 45.357 -2.9421 27 12 3 0 0 0 0.19171 1 8758 8758 38.176 9.094 1 1245800 1350 7844 697 698 1614 1614 0.012747362714208066 AEKAMTALA 9 Unmodified _AEKAMTALA_ 0 0 0 ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1 ENSG00000240682|ENST00000393295|ISY1 ENSG00000240682|ENST00000393295|ISY1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 453.241678 904.468803 0.55651 0.00025223 -0.5964 -0.00027031 -0.039891 -1.808E-05 453.24139482012936 45.333 0.73593 45.333 44.955 45.691 0 0.15881 -0.00049376 NaN 38.176 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3660200 1351 7844 697 698 0.012747362714208066 AEKAMTALA 9 Unmodified _AEKAMTALA_ 0 0 0 ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1 ENSG00000240682|ENST00000393295|ISY1 ENSG00000240682|ENST00000393295|ISY1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.241678 904.468803 -0.1792 -8.122E-05 0.41872 0.00018978 0.23952 0.00010856 453.2416951002831 47.962 0.46944 45.093 44.876 45.345 -2.869 -0.081059 0.00042642 NaN 38.176 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1140300 1352 7844 697 698 0.012747362714208066 AEKAMTALA 9 Unmodified _AEKAMTALA_ 0 0 0 ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1 ENSG00000240682|ENST00000393295|ISY1 ENSG00000240682|ENST00000393295|ISY1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.241678 904.468803 -0.13094 -5.9348E-05 0.31355 0.00014212 0.18261 8.2768E-05 453.2417926818593 48.078 0.41579 45.128 44.915 45.331 -2.9499 -0.046507 0.0003311 NaN 38.176 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1145900 1353 7844 697 698 0.012747362714208066 AEKDDDLKRTA 11 Unmodified _AEKDDDLKRTA_ 0 0 0 ENST00000498250.1_1_3:37369266-37370614:+|nuORF;nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 ENST00000498250.1_1_3:37369266-37370614:+|nuORF;nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 421.3221435546875 3 421.217608 1260.63099 -0.65634 -0.00027646 0.97243 0.00040961 0.3161 0.00013315 421.218015915673 14.581 0.2838 13.408 13.279 13.563 -1.173 12 7 2 0 0 0 0.96185 1 1994 1994 3.5927 0.96144 1 1204800 1354 4568;10600 698 699 1615 1615 0.011103714872888304 AEKDDDLKRTA 11 Unmodified _AEKDDDLKRTA_ 0 0 0 ENST00000498250.1_1_3:37369266-37370614:+|nuORF;nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 ENST00000498250.1_1_3:37369266-37370614:+|nuORF;nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 421.217608 1260.63099 -0.042912 -1.8075E-05 0.25246 0.00010634 0.20955 8.8266E-05 421.2177315882727 13.811 0.24666 13.811 13.685 13.931 0 0.25368 -0.00061894 NaN 3.5927 17 6 4 NaN NaN NaN NaN 0 NaN NaN 0 2748300 1355 4568;10600 698 699 0.011103714872888304 AEKDDDLKRTA 11 Unmodified _AEKDDDLKRTA_ 0 0 0 ENST00000498250.1_1_3:37369266-37370614:+|nuORF;nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 ENST00000498250.1_1_3:37369266-37370614:+|nuORF;nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 421.217608 1260.63099 -0.81385 -0.00034281 0.99109 0.00041747 0.17725 7.466E-05 421.21795361586754 14.566 0.24046 13.452 13.331 13.572 -1.1142 -0.10507 0.00031444 NaN 3.5927 18 6 4 NaN NaN NaN NaN 0 NaN NaN 0 2498200 1356 4568;10600 698 699 0.011103714872888304 AEKDEKVP 8 Unmodified _AEKDEKVP_ 0 0 0 REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2418518066406 2 458.242732 914.470912 -0.032546 -1.4914E-05 0.18169 8.3257E-05 0.14914 6.8343E-05 458.2426754166649 39.465 0.41989 37.023 36.821 37.241 -2.4419 19 11 2 0 0 0 0.69713 1 7033 7033 14.838 1.3304 1 664610 + 1357 17048 699 700 1616 1616 0.010254882809022092 AEKDGKLTAY 10 Unmodified _AEKDGKLTAY_ 0 0 0 PTPRZ1|p.D1781A|1|0.19|ENSG00000106278|chr7:122036657-122036657|A/C|missense_variant PTPRZ1|p.D1781A|1|0.19|ENSG00000106278|chr7:122036657-122036657|A/C|missense_variant PTPRZ1|p.D1781A|1|0.19|ENSG00000106278|chr7:122036657-122036657|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 549.279052734375 2 548.287671 1094.56079 1.3758 0.00075434 -1.2441 -0.00068214 0.13168 7.2199E-05 548.2869067153284 25.697 0.41619 24.049 23.859 24.275 -1.6482 22 11 3 0 0 0 0.71097 1 4505 4505 10.074 3.3508 1 966930 1358 12849 700 701 1617 1617 0.017291178894765835 AEKDGVKVP 9 Unmodified _AEKDGVKVP_ 0 0 0 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.5032958984375 3 314.846675 941.518196 -0.44927 -0.00014145 0.34245 0.00010782 -0.10682 -3.3631E-05 314.8467808810363 29.584 0.96964 29.584 29.195 30.164 0 87 27 5 0 0 0 0.039965 2 5251 5251;5410 59.368 22.862 1 35512000 1359 2420 701 702 1618;1619 1618 0.04509767551905952 AEKDGVKVP 9 Unmodified _AEKDGVKVP_ 0 0 0 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 314.846675 941.518196 0.0082917 2.6106E-06 -0.10401 -3.2749E-05 -0.095723 -3.0138E-05 314.8466308888572 31.598 0.9458 29.368 28.99 29.936 -2.2305 -0.074292 -7.1452E-05 NaN 59.368 80 26 4 NaN NaN NaN NaN 0 NaN NaN 0 30642000 1360 2420 701 702 0.04509767551905952 AEKDGVKVP 9 Unmodified _AEKDGVKVP_ 0 0 0 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 314.846675 941.518196 0.29393 9.2544E-05 -0.41536 -0.00013078 -0.12143 -3.8232E-05 314.84654953418857 31.452 1.2277 29.425 28.989 30.216 -2.0264 -0.016476 -0.00036553 NaN 59.368 88 34 4 NaN NaN NaN NaN 0 NaN NaN 0 35107000 1361 2420 701 702 0.04509767551905952 AEKDGVKVP 9 Unmodified _AEKDGVKVP_ 0 0 0 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 314.846675 941.518196 -0.19751 -6.2186E-05 0.094093 2.9625E-05 -0.10342 -3.2561E-05 314.8467123281205 31.539 1.3956 29.39 29.023 30.419 -2.1483 -0.051397 0.00011567 NaN 59.368 97 39 4 NaN NaN NaN NaN 0 NaN NaN 0 31921000 1362 2420 701 702 0.04509767551905952 AEKDLMTAY 9 Unmodified _AEKDLMTAY_ 0 0 0 REV__nc|ENSG00000197121|Q75T13-4|PGAP1 REV__nc|ENSG00000197121|Q75T13-4|PGAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.270263671875 2 521.2497 1040.48485 0.24716 0.00012883 -1.4902 -0.00077677 -1.2431 -0.00064794 521.2481935829662 88.416 1.2928 84.666 84.257 85.55 -3.7501 55 36 3 0 0 0 0.54354 1 16941 16941 16.942 2.104 1 1656900 + 1363 19306 702 703 1620 1620 -0.033776022823076346 AEKDRKAL 8 Unmodified _AEKDRKAL_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C;CCDC88C|p.K1383Sfs*29|1|0.08|ENSG00000015133|chr14:91291049-91291049|T/-|frameshift_variant ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25018310546875 2 465.771991 929.529429 0.43284 0.0002016 -0.30923 -0.00014403 0.12361 5.7573E-05 465.77180886063184 45.552 0.48929 45.552 45.27 45.759 0 21 13 2 0 0 0 0.98792 1 8521 8521 14.582 2.0501 1 2040200 1364 1107 703 704 1621 1621 0.06184589646022687 AEKEDEGVY 9 Unmodified _AEKEDEGVY_ 0 0 0 ENSG00000134571|ENST00000545968|MYBPC3;nc|ENSG00000134571|Q14896-2|MYBPC3 ENSG00000134571|ENST00000545968|MYBPC3 ENSG00000134571|ENST00000545968|MYBPC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.274658203125 2 520.232561 1038.45057 -0.04005 -2.0835E-05 -0.61241 -0.0003186 -0.65246 -0.00033943 520.2321954386304 48.859 2.6264 45.852 45.238 47.865 -3.0068 252 75 6 0 0 0 0.66537 1 8841 8841 8.5933 3.8373 1 140930000 1365 3862 704 705 1622 1622 -0.06711727169545156 AEKEGWPL 8 Unmodified _AEKEGWPL_ 0 0 0 ENST00000446607.1_1_1:236274160-236274493:+|nuORF;ENST00000466237.1_1_22:41911770-41917430:+|nuORF;ENSG00000100412|ENST00000216254|ACO2 ENST00000446607.1_1_1:236274160-236274493:+|nuORF ENST00000446607.1_1_1:236274160-236274493:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2414245605469 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 63.973 1 60.975 60.475 61.475 -2.9975 0 0 0 0.22699 1 12366 12366 0.68139 0 1 1366 1972 705 706 1623 1623 -0.0016619051090174253 AEKEKAQL 8 Unmodified _AEKEKAQL_ 0 0 0 FAM193B|p.S518Qfs*20|1|0.34|ENSG00000146067|chr5:177524930-177524930|G/-|frameshift_variant;FAM193B|p.P574Lfs*11|1|0.1|ENSG00000146067|chr5:177524765-177524765|C/-|frameshift_variant;ENSG00000146067|ENST00000514747|FAM193B FAM193B|p.S518Qfs*20|1|0.34|ENSG00000146067|chr5:177524930-177524930|G/-|frameshift_variant FAM193B|p.S518Qfs*20|1|0.34|ENSG00000146067|chr5:177524930-177524930|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2420349121094 2 458.758549 915.502546 0.027555 1.2641E-05 0.019829 9.0967E-06 0.047384 2.1738E-05 458.7586222746669 92.953 0.44948 92.953 92.643 93.092 0 19 12 2 0 0 0 0.57473 1 18196 18196 39.957 3.8303 1 1545800 1367 4637 706 707 1624 1624 0.04141481034844219 AEKEKAQL 8 Unmodified _AEKEKAQL_ 0 0 0 FAM193B|p.S518Qfs*20|1|0.34|ENSG00000146067|chr5:177524930-177524930|G/-|frameshift_variant;FAM193B|p.P574Lfs*11|1|0.1|ENSG00000146067|chr5:177524765-177524765|C/-|frameshift_variant;ENSG00000146067|ENST00000514747|FAM193B FAM193B|p.S518Qfs*20|1|0.34|ENSG00000146067|chr5:177524930-177524930|G/-|frameshift_variant FAM193B|p.S518Qfs*20|1|0.34|ENSG00000146067|chr5:177524930-177524930|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2418212890625 2 458.758549 915.502546 0.091248 4.1861E-05 0.32964 0.00015122 0.42088 0.00019308 458.7586262581263 97.2 0.68521 92.965 92.471 93.156 -4.2348 34 19 2 0 0 0 0.47546 1 18584 18584 36.044 0 1 2308300 1368 4637 706 707 1625 1625 0.04141481034844219 AEKEMHNLA 9 Unmodified _AEKEMHNLA_ 0 0 0 ENST00000581302.5_1_18:21033283-21057068:+|nuORF;RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3 ENST00000581302.5_1_18:21033283-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2681274414062 2 521.752941 1041.49133 0.17834 9.3051E-05 -0.29651 -0.00015471 -0.11817 -6.1655E-05 521.7530554906565 20.196 0.27727 20.196 19.998 20.276 0 22 7 4 0 0 0 0.48307 1 3308 3308 33.445 19.539 1 1220200 1369 2084 707 708 1626 1626 -0.02775664330943073 AEKEMHNLA 9 Unmodified _AEKEMHNLA_ 0 0 0 ENST00000581302.5_1_18:21033283-21057068:+|nuORF;RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3 ENST00000581302.5_1_18:21033283-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2711181640625 2 521.752941 1041.49133 0.25963 0.00013546 -0.42067 -0.00021948 -0.16104 -8.4021E-05 521.7528189919068 21.603 0.35478 20.129 19.912 20.266 -1.4742 23 9 3 0 0 0 0.66316 1 3626 3626 8.7454 0.15213 1 1128100 1370 2084 707 708 1627 1627 -0.02775664330943073 AEKEMHNLA 9 Unmodified _AEKEMHNLA_ 0 0 0 ENST00000581302.5_1_18:21033283-21057068:+|nuORF;RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3 ENST00000581302.5_1_18:21033283-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2659912109375 2 521.752941 1041.49133 -0.90616 -0.00047279 0.92235 0.00048124 0.016187 8.4458E-06 521.7535053990048 21.45 0.34397 20.066 19.902 20.246 -1.3847 16 9 2 0 0 0 0.048406 1 3373 3373 71.708 33.734 1 1294200 1371 2084 707 708 1628 1628 -0.02775664330943073 AEKEMHNLA 9 Unmodified _AEKEMHNLA_ 0 0 0 ENST00000581302.5_1_18:21033283-21057068:+|nuORF;RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3 ENST00000581302.5_1_18:21033283-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.282470703125 2 521.752941 1041.49133 -0.61607 -0.00032144 0.75708 0.00039501 0.14101 7.357E-05 521.7533563541463 21.757 0.40465 20.036 19.85 20.255 -1.7211 17 11 2 0 0 0 0.5354 1 3433 3433 17.443 4.4002 1 822940 1372 2084 707 708 1629 1629 -0.02775664330943073 AEKEMTSVVA 10 Unmodified _AEKEMTSVVA_ 0 0 0 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2799072265625 2 532.768257 1063.52196 0.35586 0.00018959 -0.19277 -0.0001027 0.16308 8.6885E-05 532.7682224272603 43.887 1.0264 43.887 43.433 44.459 0 77 29 4 0 0 0 0.018978 4 8188 8169;8188;8215;8263 91.085 41.152 1 62476000 1373 1535 708 709 1630;1631;1632;1633 1631 -0.007259307365302448 AEKEMTSVVA 10 Unmodified _AEKEMTSVVA_ 0 0 0 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2695922851562 2 532.768257 1063.52196 0.031738 1.6909E-05 -0.30062 -0.00016016 -0.26888 -0.00014325 532.7682028342751 46.653 0.82832 43.813 43.382 44.21 -2.8409 85 23 5 0 0 0 0.023807 1 8785 8785 51 46.396 1 88063000 1374 1535 708 709 1634 1634 -0.007259307365302448 AEKEMTSVVA 10 Unmodified _AEKEMTSVVA_ 0 0 0 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 532.768257 1063.52196 0.38631 0.00020581 -0.51163 -0.00027258 -0.12532 -6.6769E-05 532.7680621905344 46.717 1.0025 43.775 43.374 44.376 -2.9421 82 28 4 0 0 0 0.018978 6 8529 8435;8439;8453;8485;8487;8529 91.085 45.788 1 75013000 1375 1535 708 709 1635;1636;1637;1638;1639;1640 1640 -0.007259307365302448 AEKEMTSVVA 10 Unmodified _AEKEMTSVVA_ 0 0 0 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2726440429688 2 532.768257 1063.52196 0.40806 0.0002174 1.6473 0.00087762 2.0554 0.001095 532.7687949761441 48.093 0.21019 45.151 45.006 45.216 -2.9421 7 5 2 0 0 0 0.5575 1 8764 8764 21.537 2.28 1 450940 1376 1535 708 709 1641 1641 -0.007259307365302448 AEKEMTSVVA 10 Unmodified _AEKEMTSVVA_ 0 0 0 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2696533203125 2 532.768257 1063.52196 -0.043841 -2.3357E-05 -0.070415 -3.7515E-05 -0.11426 -6.0872E-05 532.768281487626 46.734 1.0067 43.867 43.406 44.413 -2.8666 93 28 5 0 0 0 0.056461 3 8503 8455;8503;8553 81.915 40.076 1 55713000 1377 1535 708 709 1642;1643;1644 1643 -0.007259307365302448 AEKEMTSVVA 10 Oxidation (M) _AEKEM(Oxidation (M))TSVVA_ AEKEM(1)TSVVA AEKEM(69)TSVVA 0 0 1 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2677001953125 2 540.765714 1079.51688 1.0895 0.00058919 -0.97391 -0.00052666 0.11563 6.2528E-05 540.7652001393922 23.871 0.55654 22.318 22.081 22.638 -1.5532 37 15 3 0 0 0 0.07727 2 4116 4116;4165 69.338 40.257 1 12939000 1378 1535 708 710 1645;1646 1645 12 -0.01970234599161813 AEKEMTSVVA 10 Oxidation (M) _AEKEM(Oxidation (M))TSVVA_ AEKEM(1)TSVVA AEKEM(69)TSVVA 0 0 1 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2676391601562 2 540.765714 1079.51688 0.056092 3.0333E-05 0.10082 5.4518E-05 0.15691 8.4851E-05 540.7657926264643 23.79 0.44415 22.256 22.026 22.47 -1.5342 38 12 4 0 0 0 0.07727 2 3835 3827;3835 69.338 33.211 1 10185000 1379 1535 708 710 1647;1648 1648 12 -0.01970234599161813 AEKEMTSVVA 10 Oxidation (M) _AEKEM(Oxidation (M))TSVVA_ AEKEM(1)TSVVA AEKEM(57)TSVVA 0 0 1 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.267333984375 2 540.765714 1079.51688 -0.24884 -0.00013456 0.13745 7.4327E-05 -0.11139 -6.0238E-05 540.7658432391418 24.033 0.69129 22.179 21.915 22.606 -1.8534 47 19 4 0 0 0 0.10926 1 3873 3873 57.249 21.122 1 8426100 1380 1535 708 710 1649 1649 12 -0.01970234599161813 AEKEMTSVVA 10 Oxidation (M) _AEKEM(Oxidation (M))TSVVA_ 0 0 1 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.765714 1079.51688 0.30382 0.0001643 -0.28246 -0.00015274 0.021368 1.1555E-05 540.7656076056153 22.479 0.63246 22.479 22.155 22.788 0 0.17129 -2.6033E-05 NaN 69.338 50 17 4 NaN NaN NaN NaN 0 NaN NaN 0 17593000 1381 1535 708 710 12 -0.01970234599161813 AEKEPEGR 8 Unmodified _AEKEPEGR_ 0 0 0 MTF2|p.T368R|1|0.23|ENSG00000143033|chr1:93129391-93129391|C/G|missense_variant MTF2|p.T368R|1|0.23|ENSG00000143033|chr1:93129391-93129391|C/G|missense_variant MTF2|p.T368R|1|0.23|ENSG00000143033|chr1:93129391-93129391|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22930908203125 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 56.978 1 56.978 56.478 57.478 0 0 0 0 0.22674 1 10887 10887 1.4551 1.0468 1 1382 12167 709 711 1650 1650 -0.0148856652166387 AEKEPEGR 8 Unmodified _AEKEPEGR_ 0 0 0 MTF2|p.T368R|1|0.23|ENSG00000143033|chr1:93129391-93129391|C/G|missense_variant MTF2|p.T368R|1|0.23|ENSG00000143033|chr1:93129391-93129391|C/G|missense_variant MTF2|p.T368R|1|0.23|ENSG00000143033|chr1:93129391-93129391|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2290954589844 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 138.07 1 133.23 132.73 133.73 -4.84 0 0 0 0.22665 1 26605 26605 0.68139 0 1 1383 12167 709 711 1651 1651 -0.0148856652166387 AEKEPTQL 8 Unmodified _AEKEPTQL_ 0 0 0 REV__ENST00000355417.6_1_5:150584989-150603580:-|nuORF REV__ENST00000355417.6_1_5:150584989-150603580:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2420349121094 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 93.036 1 93.036 92.536 93.536 0 0 0 0 0.16002 1 18196 18196 36.044 7.5574 1 + 1384 20791 710 712 1652 1652 0.010254882809135779 AEKFMRRPTWG 11 Unmodified _AEKFMRRPTWG_ 0 0 0 REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2418212890625 3 460.239801 1377.69757 NaN NaN NaN NaN NaN NaN NaN 19.191 1 19.191 18.691 19.691 0 0 0 0 0.22632 1 3126 3126 0.172 0.16604 1 + 1385 12913 711 713 1653 1653 0.023833285681803318 AEKFMRRPTWG 11 Unmodified _AEKFMRRPTWG_ 0 0 0 REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23370361328125 3 460.239801 1377.69757 NaN NaN NaN NaN NaN NaN NaN 88.67 1 84.675 84.175 85.175 -3.9953 0 0 0 0.22632 1 16893 16893 0.03141 0 1 + 1386 12913 711 713 1654 1654 0.023833285681803318 AEKFPSTETA 10 Unmodified _AEKFPSTETA_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2657470703125 2 540.764029 1079.5135 0.41583 0.00022487 0.34263 0.00018528 0.75846 0.00041015 540.7639348261785 39.192 1.006 39.192 38.603 39.609 0 60 28 3 0 0 0 0.0023736 3 7269 7221;7234;7269 111.31 53.587 1 3348200 1387 2991 712 714 1655;1656;1657 1657 -0.02307161381509104 AEKFPSTETA 10 Unmodified _AEKFPSTETA_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2655029296875 2 540.764029 1079.5135 0.038974 2.1075E-05 0.30418 0.00016449 0.34315 0.00018556 540.7641153021901 41.879 0.96406 39.24 38.775 39.739 -2.6396 57 27 3 0 0 0 0.00087899 4 7856 7763;7801;7810;7856 118.21 51.989 1 4110100 1388 2991 712 714 1658;1659;1660;1661 1661 -0.02307161381509104 AEKFPSTETA 10 Unmodified _AEKFPSTETA_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2657470703125 2 540.764029 1079.5135 0.026124 1.4127E-05 0.28172 0.00015234 0.30784 0.00016647 540.7640803884163 41.786 0.95477 39.135 38.653 39.607 -2.651 57 26 3 0 0 0 0.0067116 4 7485 7440;7456;7485;7492 107.56 61.864 1 3578900 1389 2991 712 714 1662;1663;1664;1665 1664 -0.02307161381509104 AEKFPSTETA 10 Unmodified _AEKFPSTETA_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2655639648438 2 540.764029 1079.5135 0.11603 6.2747E-05 0.18333 9.9138E-05 0.29936 0.00016188 540.7640473973648 41.789 0.87653 39.183 38.737 39.614 -2.606 57 24 3 0 0 0 0.00021282 3 7520 7451;7473;7520 121.5 57.543 1 2926400 1390 2991 712 714 1666;1667;1668 1668 -0.02307161381509104 AEKGCFEPY 9 Unmodified _AEKGCFEPY_ 0 0 0 REV__ABCA9|p.S472Y|1|0.34|ENSG00000154258|chr17:69032138-69032138|G/T|missense_variant REV__ABCA9|p.S472Y|1|0.34|ENSG00000154258|chr17:69032138-69032138|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2601928710938 2 522.228768 1042.44298 -0.68756 -0.00035906 -1.8308 -0.00095611 -2.5184 -0.0013152 522.2281463224629 47.9 0.60034 44.958 44.579 45.179 -2.9421 29 16 3 0 0 0 0.55979 1 8744 8744 15.847 4.2069 1 1616900 + 1391 12894 713 715 1669 1669 -0.0765415797084188 AEKGCFEPY 9 Unmodified _AEKGCFEPY_ 0 0 0 REV__ABCA9|p.S472Y|1|0.34|ENSG00000154258|chr17:69032138-69032138|G/T|missense_variant REV__ABCA9|p.S472Y|1|0.34|ENSG00000154258|chr17:69032138-69032138|G/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.228768 1042.44298 -0.68756 -0.00035906 -1.8308 -0.00095611 -2.5184 -0.0013152 522.2281463224629 47.9 0.60034 44.958 44.579 45.179 -2.9421 0.026674 0.0015239 NaN 15.847 29 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1616900 + 1392 12894 713 715 -0.0765415797084188 AEKGEFKA 8 Unmodified _AEKGEFKA_ 0 0 0 ENST00000319770.7_1_12:6775995-6776247:-|nuORF ENST00000319770.7_1_12:6775995-6776247:-|nuORF ENST00000319770.7_1_12:6775995-6776247:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 440.7189025878906 2 440.232168 878.449782 0.18076 7.9577E-05 0.056879 2.504E-05 0.23764 0.00010462 440.2320839286457 53.415 1.137 53.415 52.966 54.103 0 40 31 2 0 0 0 0.86877 1 10301 10301 0.68139 0.054566 1 2006100 1393 8704 714 716 1670 1670 0.005695229720458883 AEKGEFKA 8 Unmodified _AEKGEFKA_ 0 0 0 ENST00000319770.7_1_12:6775995-6776247:-|nuORF ENST00000319770.7_1_12:6775995-6776247:-|nuORF ENST00000319770.7_1_12:6775995-6776247:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 440.232168 878.449782 0.028121 1.238E-05 0.18007 7.9273E-05 0.20819 9.1653E-05 440.2321272792467 56.622 1.3963 53.432 52.565 53.962 -3.1895 0.042465 -6.0174E-05 NaN 0.68139 56 39 2 NaN NaN NaN NaN 0 NaN NaN 0 1733000 1394 8704 714 716 0.005695229720458883 AEKGEFKA 8 Unmodified _AEKGEFKA_ 0 0 0 ENST00000319770.7_1_12:6775995-6776247:-|nuORF ENST00000319770.7_1_12:6775995-6776247:-|nuORF ENST00000319770.7_1_12:6775995-6776247:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 440.232168 878.449782 -0.12237 -5.387E-05 0.4765 0.00020977 0.35413 0.0001559 440.232196900292 56.497 0.95665 53.321 53.045 54.002 -3.1761 -0.068277 0.00020082 NaN 0.68139 43 26 2 NaN NaN NaN NaN 0 NaN NaN 0 2094500 1395 8704 714 716 0.005695229720458883 AEKGYSQQLRE 11 Unmodified _AEKGYSQQLRE_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST nc|ENSG00000151914|Q03001-3|DST nc|ENSG00000151914|Q03001-3|DST MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22479248046875 3 436.889603 1307.64698 NaN NaN NaN NaN NaN NaN NaN 19.268 1 19.268 18.768 19.768 0 0 0 0 0.23624 1 3142 3142 3.3557 0.51244 1 1396 12387 715 717 1671 1671 0.005460777241751202 AEKHNFAKP 9 Unmodified _AEKHNFAKP_ 0 0 0 ENSG00000113272|ENST00000231198|THG1L ENSG00000113272|ENST00000231198|THG1L ENSG00000113272|ENST00000231198|THG1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2805786132812 2 521.277441 1040.54033 0.10417 5.4302E-05 -0.15163 -7.9039E-05 -0.047455 -2.4737E-05 521.277315055901 15.11 0.80395 15.11 14.634 15.438 0 76 22 4 0 0 0 0.10699 3 2274 2232;2274;2323 53.404 19.002 1 26190000 1397 2733 716 718 1672;1673;1674 1673 0.02167992020326892 AEKHNFAKP 9 Unmodified _AEKHNFAKP_ 0 0 0 ENSG00000113272|ENST00000231198|THG1L ENSG00000113272|ENST00000231198|THG1L ENSG00000113272|ENST00000231198|THG1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2802734375 2 521.277441 1040.54033 -0.67601 -0.00035239 0.6389 0.00033305 -0.037111 -1.9345E-05 521.2777194751646 16.243 0.77074 15.027 14.514 15.285 -1.2159 67 21 4 0 0 0 0.080883 2 2556 2505;2556 61.602 37.581 1 11188000 1398 2733 716 718 1675;1676 1676 0.02167992020326892 AEKHNFAKP 9 Unmodified _AEKHNFAKP_ 0 0 0 ENSG00000113272|ENST00000231198|THG1L ENSG00000113272|ENST00000231198|THG1L ENSG00000113272|ENST00000231198|THG1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2802734375 2 521.277441 1040.54033 -1.2385 -0.00064559 1.1317 0.00058994 -0.10677 -5.5655E-05 521.2780003602155 16.221 0.86492 14.999 14.537 15.402 -1.2219 70 24 4 0 0 0 0.13904 4 2311 2264;2267;2311;2358 45.74 26.378 1 6527200 1399 2733 716 718 1677;1678;1679;1680 1679 0.02167992020326892 AEKICEYT 8 Unmodified _AEKICEYT_ 0 0 0 REV__nc|ENSG00000164823|Q9Y236|OSGIN2 REV__nc|ENSG00000164823|Q9Y236|OSGIN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7237854003906 2 478.723318 955.432083 -0.024174 -1.1573E-05 -0.18247 -8.7351E-05 -0.20664 -9.8924E-05 478.72330885316893 80.608 0.97417 76.769 76.218 77.192 -3.8392 72 27 4 0 0 0 0.69031 1 15213 15213 15.847 2.3393 1 9759400 + 1400 17713 717 719 1681 1681 -0.04741560345121343 AEKICEYT 8 Unmodified _AEKICEYT_ 0 0 0 REV__nc|ENSG00000164823|Q9Y236|OSGIN2 REV__nc|ENSG00000164823|Q9Y236|OSGIN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73126220703125 2 478.723318 955.432083 -0.17786 -8.5147E-05 0.047247 2.2618E-05 -0.13062 -6.2529E-05 478.7233749358548 80.431 0.97652 76.744 76.27 77.247 -3.6879 81 27 4 0 0 0 0.58432 1 15247 15247 23.148 5.0134 1 13674000 + 1401 17713 717 719 1682 1682 -0.04741560345121343 AEKICQGRW 9 Unmodified _AEKICQGRW_ 0 0 0 REV__ENSG00000169710|ENST00000306749|FASN REV__ENSG00000169710|ENST00000306749|FASN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 545.291748046875 2 545.776751 1089.53895 -0.0026849 -1.4654E-06 -2.1394 -0.0011676 -2.1421 -0.0011691 545.7757213826278 48.507 0.17529 45.557 45.436 45.612 -2.9499 5 4 2 0 0 0 0.69192 1 8885 8885 20.454 2.3073 1 218660 + 1402 18116 718 720 1683 1683 -0.002239653400692987 AEKIFPAAD 9 Unmodified _AEKIFPAAD_ 0 0 0 tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1 tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1 tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2532043457031 2 481.2531 960.491647 -0.31618 -0.00015216 0.59471 0.00028621 0.27854 0.00013405 481.253289248104 62.129 1.0714 62.129 61.768 62.839 0 55 30 3 0 0 0 0.60061 1 11869 11869 13.042 1.4022 1 4036100 1403 26196 719 721 1684 1684 0.009820786605473586 AEKIVVVTA 9 Unmodified _AEKIVVVTA_ 0 0 0 REV__ENSG00000137463|ENST00000398955|MGARP REV__ENSG00000137463|ENST00000398955|MGARP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2500305175781 2 465.286943 928.559333 0.36459 0.00016964 -0.43146 -0.00020075 -0.066873 -3.1115E-05 465.2866725621116 72.346 0.79982 68.807 68.466 69.266 -3.5385 66 22 4 0 0 0 0.086124 2 13738 13738;13762 31.728 25.241 1 15139000 + 1404 16392 720 722 1685;1686 1685 0.09219528591358994 AEKKEDNRY 9 Unmodified _AEKKEDNRY_ 0 0 0 nc|ENSG00000184156|O43525-2|KCNQ3;ENST00000519589.1_1_8:133141511-133152462:-|nuORF;KCNQ3|p.F713Lfs*6|1|0.24|ENSG00000184156|chr8:132129742-132129742|A/-|frameshift_variant;ENSG00000184156|ENST00000388996|KCNQ3;KCNQ3|p.D679N|1|0.39|ENSG00000184156|chr8:132129846-132129846|C/T|missense_variant nc|ENSG00000184156|O43525-2|KCNQ3 nc|ENSG00000184156|O43525-2|KCNQ3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3175048828125 2 576.785827 1151.5571 NaN NaN NaN NaN NaN NaN NaN 41.548 1 38.913 38.413 39.413 -2.6348 0 0 0 0.23508 1 7760 7760 7.9102 1.7044 1 1405 12509 721 723 1687 1687 -0.012615518843858808 AEKKEDNRY 9 Unmodified _AEKKEDNRY_ 0 0 0 nc|ENSG00000184156|O43525-2|KCNQ3;ENST00000519589.1_1_8:133141511-133152462:-|nuORF;KCNQ3|p.F713Lfs*6|1|0.24|ENSG00000184156|chr8:132129742-132129742|A/-|frameshift_variant;ENSG00000184156|ENST00000388996|KCNQ3;KCNQ3|p.D679N|1|0.39|ENSG00000184156|chr8:132129846-132129846|C/T|missense_variant nc|ENSG00000184156|O43525-2|KCNQ3 nc|ENSG00000184156|O43525-2|KCNQ3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3224487304688 2 576.785827 1151.5571 0.26034 0.00015016 0.17849 0.00010295 0.43883 0.00025311 576.7857649883938 35.943 0.48624 33.69 33.366 33.852 -2.2527 35 13 4 0 0 0 0.55979 1 6300 6300 15.847 3.6065 1 3914500 1406 12509 721 723 1688 1688 -0.012615518843858808 AEKKETPA 8 Unmodified _AEKKETPA_ 0 0 0 REV__ENST00000489581.1_1_22:22326749-22330123:-|nuORF REV__ENST00000489581.1_1_22:22326749-22330123:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2265319824219 2 437.23745 872.460347 0.16659 7.2838E-05 -0.62214 -0.00027202 -0.45555 -0.00019918 437.2372300912278 22.025 0.41928 22.025 21.77 22.189 0 14 11 2 0 0 0 0.76728 1 3673 3673 5.7604 0.52976 1 451390 + 1407 14659 722 724 1689 1689 0.019015056264606756 AEKKRAQEERK 11 Unmodified _AEKKRAQEERK_ 0 0 0 WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22442626953125 3 458.26003 1371.75826 NaN NaN NaN NaN NaN NaN NaN 43.967 1 41.177 40.677 41.677 -2.79 0 0 0 0.22632 1 8250 8250 0.026206 0 1 1408 6172 723 725 1690 1690 0.08725137152100615 AEKKRGYK 8 Unmodified _AEKKRGYK_ 0 0 0 REV__nc|ENSG00000174780|O76094-2|SRP72 REV__nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26397705078125 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 73.094 1 69.784 69.284 70.284 -3.3107 0 0 0 0.21486 1 14249 14249 7.9102 1.5561 1 + 1409 18431 724 726 1691 1691 0.07092582399991443 AEKKYYTY 8 Unmodified _AEKKYYTY_ 0 0 0 REV__tr|U7SV75|U7SV75_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01157PE=4SV=1 REV__tr|U7SV75|U7SV75_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01157PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2639770507812 2 533.266207 1064.51786 NaN NaN NaN NaN NaN NaN NaN 104.54 1 100.48 99.982 100.98 -4.0543 0 0 0 0.20896 1 20101 20101 18.135 1.9859 1 + 1410 25187 725 727 1692 1692 -0.01181652167952052 AEKLDEIYVA 10 Unmodified _AEKLDEIYVA_ 0 0 0 nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3247680664062 2 575.803154 1149.59175 0.28743 0.0001655 -0.27917 -0.00016075 0.0082581 4.755E-06 575.8029867888541 96.838 0.59189 96.838 96.528 97.119 0 21 16 2 0 0 0 0.046341 1 19014 19014 38.176 36.721 1 2558600 1411 3915 726 728 1693 1693 0.02294271203709286 AEKLDEIYVA 10 Unmodified _AEKLDEIYVA_ 0 0 0 nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.33935546875 2 575.803154 1149.59175 0.016794 9.6701E-06 -0.0075633 -4.355E-06 0.0092309 5.3152E-06 575.8031460674498 100.89 0.69745 96.729 96.391 97.089 -4.1594 33 19 2 0 0 0 0.28427 1 19813 19813 38.615 10.986 1 3575600 1412 3915 726 728 1694 1694 0.02294271203709286 AEKLERFS 8 Unmodified _AEKLERFS_ 0 0 0 REV__UBE2O|p.H1018Tfs*12|1|0.32|ENSG00000175931|chr17:76392008-76392008|G/-|frameshift_variant REV__UBE2O|p.H1018Tfs*12|1|0.32|ENSG00000175931|chr17:76392008-76392008|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2643737792969 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 60.789 1 57.475 56.975 57.975 -3.3139 0 0 0 0.21292 1 11326 11326 14.838 1.3304 1 + 1413 18493 727 729 1695 1695 0.023328834091330464 AEKLGFAGL 9 Unmodified _AEKLGFAGL_ 0 0 0 ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5 ENST00000423695.6_1_5:10250480-10261980:+|nuORF ENST00000423695.6_1_5:10250480-10261980:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75982666015625 2 453.258185 904.501818 0.24631 0.00011164 -0.076089 -3.4488E-05 0.17022 7.7152E-05 453.25809018742245 124.96 1.062 124.96 124.51 125.57 0 74 29 4 0 0 0 5.8017E-05 4 24662 24603;24662;24700;24709 129.77 32.698 1 30006000 1414 4835 728 730 1696;1697;1698;1699 1697 0.04574686385797122 AEKLGFAGL 9 Unmodified _AEKLGFAGL_ 0 0 0 ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5 ENST00000423695.6_1_5:10250480-10261980:+|nuORF ENST00000423695.6_1_5:10250480-10261980:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75982666015625 2 453.258185 904.501818 -0.076017 -3.4455E-05 0.28214 0.00012788 0.20613 9.3429E-05 453.258241686554 129.2 1.0396 124.57 124.05 125.09 -4.6292 81 29 4 0 0 0 0.00010227 3 25456 25411;25427;25456 126.57 37.139 1 27598000 1415 4835 728 730 1700;1701;1702 1702 0.04574686385797122 AEKLGFAGL 9 Unmodified _AEKLGFAGL_ 0 0 0 ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5 ENST00000423695.6_1_5:10250480-10261980:+|nuORF ENST00000423695.6_1_5:10250480-10261980:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75982666015625 2 453.258185 904.501818 0.031593 1.432E-05 0.13193 5.9798E-05 0.16352 7.4117E-05 453.25817759269114 129.43 1.1539 124.61 124.02 125.17 -4.817 88 32 4 0 0 0 5.8017E-05 3 24805 24805;24855;24901 129.77 37.139 1 29719000 1416 4835 728 730 1703;1704;1705 1703 0.04574686385797122 AEKLGFAGL 9 Unmodified _AEKLGFAGL_ 0 0 0 ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5 ENST00000423695.6_1_5:10250480-10261980:+|nuORF ENST00000423695.6_1_5:10250480-10261980:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75994873046875 2 453.258185 904.501818 0.12102 5.4855E-05 0.1659 7.5197E-05 0.28693 0.00013005 453.2581976702932 129.37 1.0593 124.62 124.19 125.25 -4.7408 81 29 4 0 0 0 5.8017E-05 1 24878 24878 129.77 32.698 1 23079000 1417 4835 728 730 1706 1706 0.04574686385797122 AEKLKEHH 8 Unmodified _AEKLKEHH_ 0 0 0 REV__nc|ENSG00000163554|P02549-2|SPTA1 REV__nc|ENSG00000163554|P02549-2|SPTA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 330.99658203125 3 331.182169 990.524678 -0.81572 -0.00027015 0.47065 0.00015587 -0.34506 -0.00011428 331.18220041709714 25.328 0.72926 23.475 23.256 23.986 -1.8534 32 20 2 0 0 0 1.0265 1 4143 4143 3.9444 2.8729 1 515600 + 1418 17584 729 731 1707 1707 0.02903705503274523 AEKLLAPGAS 10 Unmodified _AEKLLAPGAS_ 0 0 0 ENST00000382038.6_1_5:34914962-34915626:-|nuORF ENST00000382038.6_1_5:34914962-34915626:-|nuORF ENST00000382038.6_1_5:34914962-34915626:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7237548828125 2 478.7742 955.533846 0.16737 8.0133E-05 0.32495 0.00015558 0.49232 0.00023571 478.7741361354538 76.309 0.91219 76.309 75.819 76.731 0 53 25 3 0 0 0 0.33162 1 14863 14863 43.772 0 1 4859500 1419 9338 730 732 1708 1708 0.054300540689382615 AEKLNIKF 8 Unmodified _AEKLNIKF_ 0 0 0 ENSG00000041802|ENST00000265245|LSG1 ENSG00000041802|ENST00000265245|LSG1 ENSG00000041802|ENST00000265245|LSG1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78729248046875 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 61.342 1 58.381 57.881 58.881 -2.9614 0 0 0 0.21452 1 11821 11821 13.508 0.46542 1 1420 1197 731 733 1709 1709 0.07734948311224343 AEKLNQHWNRV 11 Unmodified _AEKLNQHWNRV_ 0 0 0 REV__AK5|p.K399Nfs*26|1|0.15|ENSG00000154027|chr1:77518609-77518609|A/-|frameshift_variant REV__AK5|p.K399Nfs*26|1|0.15|ENSG00000154027|chr1:77518609-77518609|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.239013671875 3 465.581103 1393.72148 0.18126 8.4393E-05 -1.3022 -0.00060627 -1.1209 -0.00052188 465.58040279459954 36.859 0.31766 36.859 36.743 37.06 0 15 8 2 0 0 0 0.96192 1 6834 6834 2.8433 2.435 1 607180 + 1421 12993 732 734 1710 1710 0.04036885326195261 AEKLVSKSV 9 Unmodified _AEKLVSKSV_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7774353027344 2 480.78985 959.565146 0.25764 0.00012387 -0.68124 -0.00032754 -0.42361 -0.00020367 480.78945333402396 33.159 0.4963 31.013 30.759 31.255 -2.1468 31 13 4 0 0 0 0.54076 1 5781 5781 17.113 0.54702 1 1927000 1422 2466 733 735 1711 1711 0.0837462710304635 AEKLWQIFRQL 11 Unmodified _AEKLWQIFRQL_ 0 0 0 REV__ENSG00000145191|ENST00000648915|EIF2B5 REV__ENSG00000145191|ENST00000648915|EIF2B5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73193359375 3 477.94175 1430.80342 -0.31946 -0.00015268 0.49019 0.00023428 0.17073 8.1597E-05 478.2765267577961 94.701 0.62365 94.701 94.279 94.903 0 26 17 2 0 0 0 0.80907 1 18546 18546 2.4348 0.18206 1 1472700 + 1423 16824 734 736 1712 1712 0.10524987685312226 AEKLWQIFRQL 11 Unmodified _AEKLWQIFRQL_ 0 0 0 REV__ENSG00000145191|ENST00000648915|EIF2B5 REV__ENSG00000145191|ENST00000648915|EIF2B5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 477.94175 1430.80342 -0.31946 -0.00015268 0.49019 0.00023428 0.17073 8.1597E-05 478.2765267577961 94.701 0.62365 94.701 94.279 94.903 0 0.19913 0.00023411 NaN 2.4348 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1472700 + 1424 16824 734 736 0.10524987685312226 AEKLWQIFRQL 11 Unmodified _AEKLWQIFRQL_ 0 0 0 REV__ENSG00000145191|ENST00000648915|EIF2B5 REV__ENSG00000145191|ENST00000648915|EIF2B5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 477.94175 1430.80342 0.03551 1.6972E-05 0.40246 0.00019235 0.43797 0.00020933 478.2763488828205 98.547 0.65769 94.414 93.952 94.61 -4.1326 -0.087774 0.00010833 NaN 2.4348 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3007700 + 1425 16824 734 736 0.10524987685312226 AEKLWQIFRQL 11 Unmodified _AEKLWQIFRQL_ 0 0 0 REV__ENSG00000145191|ENST00000648915|EIF2B5 REV__ENSG00000145191|ENST00000648915|EIF2B5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 477.94175 1430.80342 0.19384 9.2646E-05 0.16737 7.9993E-05 0.36122 0.00017264 478.2763799124196 98.756 0.77162 94.487 94.019 94.791 -4.2692 -0.015488 -0.00022875 NaN 2.4348 28 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2130400 + 1426 16824 734 736 0.10524987685312226 AEKLWQIFRQL 11 Unmodified _AEKLWQIFRQL_ 0 0 0 REV__ENSG00000145191|ENST00000648915|EIF2B5 REV__ENSG00000145191|ENST00000648915|EIF2B5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 477.94175 1430.80342 0.12046 5.7571E-05 0.31016 0.00014824 0.43061 0.00020581 478.27632826274254 98.363 0.56905 94.406 94.127 94.696 -3.9564 -0.095873 -2.4022E-05 NaN 2.4348 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1717500 + 1427 16824 734 736 0.10524987685312226 AEKLYLAD 8 Unmodified _AEKLYLAD_ 0 0 0 ENSG00000143742|ENST00000304786|SRP9;nc|ENSG00000143742|P49458-2|SRP9 ENSG00000143742|ENST00000304786|SRP9 ENSG00000143742|ENST00000304786|SRP9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.54150390625 2 461.74765 921.480748 -0.12017 -5.549E-05 0.27114 0.0001252 0.15096 6.9707E-05 461.7476723229199 67.58 0.44888 64.472 64.213 64.662 -3.1086 21 12 2 0 0 0 0.59639 1 13111 13111 34.932 8.5908 1 2119300 1428 4513 735 737 1713 1713 0.016866762862719042 AEKLYLAD 8 Unmodified _AEKLYLAD_ 0 0 0 ENSG00000143742|ENST00000304786|SRP9;nc|ENSG00000143742|P49458-2|SRP9 ENSG00000143742|ENST00000304786|SRP9 ENSG00000143742|ENST00000304786|SRP9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.53326416015625 2 461.74765 921.480748 0.26628 0.00012296 0.33549 0.00015491 0.60178 0.00027787 461.74768830883363 67.931 0.35778 64.394 64.163 64.521 -3.5362 15 9 2 0 0 0 0.43397 1 12744 12744 53.404 21.099 1 1640200 1429 4513 735 737 1714 1714 0.016866762862719042 AEKLYLAD 8 Unmodified _AEKLYLAD_ 0 0 0 ENSG00000143742|ENST00000304786|SRP9;nc|ENSG00000143742|P49458-2|SRP9 ENSG00000143742|ENST00000304786|SRP9 ENSG00000143742|ENST00000304786|SRP9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.74765 921.480748 -0.12476 -5.7609E-05 0.40733 0.00018808 0.28257 0.00013047 461.7477792539256 64.539 0.41032 64.539 64.306 64.716 0 0.080925 0.00026445 NaN 53.404 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2324400 1430 4513 735 737 0.016866762862719042 AEKLYLAD 8 Unmodified _AEKLYLAD_ 0 0 0 ENSG00000143742|ENST00000304786|SRP9;nc|ENSG00000143742|P49458-2|SRP9 ENSG00000143742|ENST00000304786|SRP9 ENSG00000143742|ENST00000304786|SRP9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.74765 921.480748 0.32299 0.00014914 -0.28853 -0.00013323 0.034456 1.591E-05 461.74743184300337 67.753 0.49132 64.427 64.205 64.697 -3.3268 -0.031306 -0.00037817 NaN 53.404 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1789700 1431 4513 735 737 0.016866762862719042 AEKMGGKI 8 Unmodified _AEKMGGKI_ 0 0 0 nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3 nc|ENSG00000165309|Q5W041-4|ARMC3 nc|ENSG00000165309|Q5W041-4|ARMC3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 417.2334289550781 2 417.231113 832.447674 NaN NaN NaN NaN NaN NaN NaN 69.368 1 69.368 68.868 69.868 0 0 0 0 0.21486 1 13429 13429 8.5933 0 1 1432 5617 736 738 1715 1715 0.024747709626012693 AEKMLKLRY 9 Unmodified _AEKMLKLRY_ 0 0 0 REV__nc|ENSG00000171459|Q8NGR2|OR1L6 REV__nc|ENSG00000171459|Q8NGR2|OR1L6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3331298828125 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 28.819 1 28.819 28.319 29.319 0 0 0 0 0.23508 1 5130 5130 4.756 0.81161 1 + 1433 24166 737 739 1716 1716 0.08394924421986616 AEKMLKLRY 9 Unmodified _AEKMLKLRY_ 0 0 0 REV__nc|ENSG00000171459|Q8NGR2|OR1L6 REV__nc|ENSG00000171459|Q8NGR2|OR1L6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.334716796875 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 29.957 1 29.957 29.457 30.457 0 0 0 0 0.23508 1 5372 5372 7.2892 3.3448 1 + 1434 24166 737 739 1717 1717 0.08394924421986616 AEKMLKLRY 9 Unmodified _AEKMLKLRY_ 0 0 0 REV__nc|ENSG00000171459|Q8NGR2|OR1L6 REV__nc|ENSG00000171459|Q8NGR2|OR1L6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3350219726562 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 32.589 1 30.359 29.859 30.859 -2.2305 0 0 0 0.23508 1 5941 5941 4.756 0.42677 1 + 1435 24166 737 739 1718 1718 0.08394924421986616 AEKMLKLRY 9 Unmodified _AEKMLKLRY_ 0 0 0 REV__nc|ENSG00000171459|Q8NGR2|OR1L6 REV__nc|ENSG00000171459|Q8NGR2|OR1L6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.329833984375 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 67.391 1 63.895 63.395 64.395 -3.4965 0 0 0 0.23508 1 12642 12642 4.756 0.42677 1 + 1436 24166 737 739 1719 1719 0.08394924421986616 AEKMLKLRY 9 Unmodified _AEKMLKLRY_ 0 0 0 REV__nc|ENSG00000171459|Q8NGR2|OR1L6 REV__nc|ENSG00000171459|Q8NGR2|OR1L6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33642578125 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 32.259 1 30.111 29.611 30.611 -2.1483 0 0 0 0.23508 1 5584 5584 4.756 0.42677 1 + 1437 24166 737 739 1720 1720 0.08394924421986616 AEKMLQYRRD 10 Unmodified _AEKMLQYRRD_ 0 0 0 ENSG00000172345|ENST00000302824|STARD5;nc|ENSG00000172345|Q9NSY2-3|STARD5;ENST00000560723.5_1_15:81616080-81616440:-|nuORF ENSG00000172345|ENST00000302824|STARD5 ENSG00000172345|ENST00000302824|STARD5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2274475097656 3 437.227561 1308.66085 0.1485 6.4929E-05 -0.084386 -3.6896E-05 0.064115 2.8033E-05 437.2274949515643 35.295 0.59048 33.018 32.761 33.352 -2.2766 23 16 2 0 0 0 0.75765 1 6173 6173 3.3196 0.68841 1 837360 1438 6209 738 740 1721 1721 0.018870319516054224 AEKMLRDG 8 Unmodified _AEKMLRDG_ 0 0 0 ENST00000425241.5_2_3:15062395-15064716:+|nuORF ENST00000425241.5_2_3:15062395-15064716:+|nuORF ENST00000425241.5_2_3:15062395-15064716:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353515625 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 55.226 1 52.091 51.591 52.591 -3.1352 0 0 0 0.21292 1 10202 10202 14.838 0 1 1439 9713 739 741 1722 1722 -0.0031903201407885717 AEKMLRDG 8 Unmodified _AEKMLRDG_ 0 0 0 ENST00000425241.5_2_3:15062395-15064716:+|nuORF ENST00000425241.5_2_3:15062395-15064716:+|nuORF ENST00000425241.5_2_3:15062395-15064716:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23773193359375 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 43.508 1 40.76 40.26 41.26 -2.7475 0 0 0 0.21486 1 7856 7856 11.64 3.7301 1 1440 9713 739 741 1723 1723 -0.0031903201407885717 AEKMVDLN 8 Unmodified _AEKMVDLN_ 0 0 0 REV__ENST00000471023.1_1_20:2637149-2637577:+|nuORF REV__ENST00000471023.1_1_20:2637149-2637577:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2299499511719 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 21.097 1 19.376 18.876 19.876 -1.7211 0 0 0 0.21486 1 3281 3281 7.2892 0.56607 1 + 1441 14784 740 742 1724 1724 -0.014418541082136471 AEKNAAKGG 9 Unmodified _AEKNAAKGG_ 0 0 0 REV__ENSG00000136872|ENST00000647789|ALDOB REV__ENSG00000136872|ENST00000647789|ALDOB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2378234863281 2 423.227417 844.44028 0.011398 4.8239E-06 0.38817 0.00016428 0.39957 0.00016911 423.22750091918914 24.846 0.47816 23.312 23.06 23.538 -1.5342 41 13 5 0 0 0 0.62102 1 4057 4057 11.64 2.2929 1 7927000 + 1442 16358 741 743 1725 1725 0.011837546865194781 AEKNAAKGG 9 Unmodified _AEKNAAKGG_ 0 0 0 REV__ENSG00000136872|ENST00000647789|ALDOB REV__ENSG00000136872|ENST00000647789|ALDOB MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 423.227417 844.44028 0.11608 4.9129E-05 -0.036346 -1.5383E-05 0.079734 3.3746E-05 423.22737458669025 23.498 0.66622 23.498 23.233 23.899 0 0.13344 7.1707E-05 NaN 11.64 49 18 4 NaN NaN NaN NaN 0 NaN NaN 0 18570000 + 1443 16358 741 743 0.011837546865194781 AEKNAAKGG 9 Unmodified _AEKNAAKGG_ 0 0 0 REV__ENSG00000136872|ENST00000647789|ALDOB REV__ENSG00000136872|ENST00000647789|ALDOB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 423.227417 844.44028 0.91621 0.00038777 -0.73284 -0.00031016 0.18337 7.7606E-05 423.227081973799 24.933 0.48489 23.284 23.06 23.545 -1.6482 -0.080541 -0.00051785 NaN 11.64 37 13 4 NaN NaN NaN NaN 0 NaN NaN 0 8495700 + 1444 16358 741 743 0.011837546865194781 AEKNAAKGG 9 Unmodified _AEKNAAKGG_ 0 0 0 REV__ENSG00000136872|ENST00000647789|ALDOB REV__ENSG00000136872|ENST00000647789|ALDOB MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 423.227417 844.44028 0.011398 4.8239E-06 0.38817 0.00016428 0.39957 0.00016911 423.22750091918914 24.846 0.47816 23.312 23.06 23.538 -1.5342 -0.052897 0.00043104 NaN 11.64 41 13 5 NaN NaN NaN NaN 0 NaN NaN 0 7927000 + 1445 16358 741 743 0.011837546865194781 AEKNDVEL 8 Unmodified _AEKNDVEL_ 0 0 0 REV__ENSG00000181240|ENST00000321510|SLC25A41 REV__ENSG00000181240|ENST00000321510|SLC25A41 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2355651855469 2 459.232364 916.450176 0.40244 0.00018482 -0.23783 -0.00010922 0.16462 7.5597E-05 459.23219206926973 75.347 0.86437 75.347 74.885 75.75 0 69 24 4 0 0 0 0.31517 1 14673 14673 36.044 6.9626 1 22446000 + 1446 18724 742 744 1726 1726 -0.011391020987730371 AEKNDVEL 8 Unmodified _AEKNDVEL_ 0 0 0 REV__ENSG00000181240|ENST00000321510|SLC25A41 REV__ENSG00000181240|ENST00000321510|SLC25A41 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23834228515625 2 459.232364 916.450176 0.061127 2.8071E-05 0.58847 0.00027024 0.64959 0.00029831 459.2325730656477 77.636 1.5829 73.978 73.077 74.66 -3.6588 105 44 4 0 0 0 0.68128 1 14737 14737 16.942 1.0951 1 20522000 + 1447 18724 742 744 1727 1727 -0.011391020987730371 AEKNGYVTV 9 Unmodified _AEKNGYVTV_ 0 0 0 ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF;ENSG00000159210|ENST00000502492|SNF8 ENST00000514089.5_1_17:47007839-47013524:-|nuORF ENST00000514089.5_1_17:47007839-47013524:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2751159667969 2 490.756007 979.497461 0.47735 0.00023426 -0.31481 -0.00015449 0.16254 7.9766E-05 490.7558138482138 44.682 0.8062 44.682 44.323 45.129 0 69 22 4 0 0 0 0.02936 1 8379 8379 117.76 10.82 1 42635000 1448 5196 743 745 1728 1728 0.006891771722280282 AEKNGYVTV 9 Unmodified _AEKNGYVTV_ 0 0 0 ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF;ENSG00000159210|ENST00000502492|SNF8 ENST00000514089.5_1_17:47007839-47013524:-|nuORF ENST00000514089.5_1_17:47007839-47013524:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2647705078125 2 490.756007 979.497461 0.044713 2.1943E-05 -0.04738 -2.3252E-05 -0.0026675 -1.3091E-06 490.75593893465145 47.521 0.76895 44.652 44.284 45.053 -2.869 65 21 4 0 0 0 0.044345 1 9014 9014 80.676 25.173 1 74151000 1449 5196 743 745 1729 1729 0.006891771722280282 AEKNGYVTV 9 Unmodified _AEKNGYVTV_ 0 0 0 ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF;ENSG00000159210|ENST00000502492|SNF8 ENST00000514089.5_1_17:47007839-47013524:-|nuORF ENST00000514089.5_1_17:47007839-47013524:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2554016113281 2 490.756007 979.497461 0.083863 4.1156E-05 -0.2272 -0.0001115 -0.14334 -7.0345E-05 490.7558678930257 47.589 0.8705 44.646 44.273 45.144 -2.9421 72 24 4 0 0 0 0.02936 1 8694 8694 117.76 10.82 1 75740000 1450 5196 743 745 1730 1730 0.006891771722280282 AEKNGYVTV 9 Unmodified _AEKNGYVTV_ 0 0 0 ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF;ENSG00000159210|ENST00000502492|SNF8 ENST00000514089.5_1_17:47007839-47013524:-|nuORF ENST00000514089.5_1_17:47007839-47013524:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2662048339844 2 490.756007 979.497461 -0.32545 -0.00015972 0.29251 0.00014355 -0.032946 -1.6169E-05 490.7561248274251 47.561 0.93017 44.611 44.26 45.19 -2.9499 78 26 4 0 0 0 0.11519 1 8658 8658 70.332 48.795 1 48268000 1451 5196 743 745 1731 1731 0.006891771722280282 AEKNLYLSQ 9 Unmodified _AEKNLYLSQ_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-3|NF1;NF1|p.Y628Lfs*6|1|0.17|ENSG00000196712|chr17:31225125-31225126|-/T|frameshift_variant;NF1|p.P678Rfs*10|1|0.35|ENSG00000196712|chr17:31226460-31226460|C/-|frameshift_variant;NF1|p.I679Dfs*21|1|0.37|ENSG00000196712|chr17:31226459-31226460|-/C|frameshift_variant;NF1|p.D946*|1|0.2|ENSG00000196712|chr17:31229444-31229445|-/T|frameshift_variant;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2822875976562 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 61.087 1 61.087 60.587 61.587 0 0 0 0 0.23277 1 11720 11720 13.906 0 1 1452 7305;12537;12538 744 746 1732 1732 0.02053135235018999 AEKPAFGTP 9 Unmodified _AEKPAFGTP_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ARHGAP17|p.P543Lfs*55|1|0.3|ENSG00000140750|chr16:24939460-24939460|G/-|frameshift_variant;ENST00000575656.5_1_16:24960717-24971282:-|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24285888671875 2 459.239993 916.465432 0.58344 0.00026794 -0.58178 -0.00026718 0.0016638 7.6409E-07 459.23966478378577 46.669 1.1555 46.669 46.003 47.158 0 103 32 4 0 0 0 0.55979 1 8798 8798 15.847 1.0089 1 31234000 1453 4323 745 747 1733 1733 0.0038580948910293955 AEKPAFGTP 9 Unmodified _AEKPAFGTP_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ARHGAP17|p.P543Lfs*55|1|0.3|ENSG00000140750|chr16:24939460-24939460|G/-|frameshift_variant;ENST00000575656.5_1_16:24960717-24971282:-|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.242919921875 2 459.239993 916.465432 -0.20609 -9.4645E-05 0.15544 7.1384E-05 -0.050652 -2.3262E-05 459.24001135076344 49.613 1.1545 46.732 46.063 47.218 -2.8811 99 32 5 0 0 0 0.33512 2 9410 9366;9410 26.995 14.755 1 41386000 1454 4323 745 747 1734;1735 1735 0.0038580948910293955 AEKPAFGTP 9 Unmodified _AEKPAFGTP_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ARHGAP17|p.P543Lfs*55|1|0.3|ENSG00000140750|chr16:24939460-24939460|G/-|frameshift_variant;ENST00000575656.5_1_16:24960717-24971282:-|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2427978515625 2 459.239993 916.465432 -0.078113 -3.5873E-05 0.069587 3.1957E-05 -0.0085263 -3.9156E-06 459.23996413987317 49.711 1.2417 46.704 46.035 47.277 -3.0068 108 35 4 0 0 0 0.54076 1 9120 9120 17.113 1.2657 1 29745000 1455 4323 745 747 1736 1736 0.0038580948910293955 AEKPFYVNV 9 Unmodified _AEKPFYVNV_ 0 0 0 nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR nc|ENSG00000186716|P11274-2|BCR nc|ENSG00000186716|P11274-2|BCR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2787475585938 2 533.782025 1065.5495 0.29728 0.00015868 -0.11186 -5.9707E-05 0.18543 9.8977E-05 533.7818968486692 107.42 0.89905 107.42 107.03 107.93 0 63 25 3 0 0 0 0.13841 1 21120 21120 63.961 29.559 1 16776000 1456 7077 746 748 1737 1737 0.019343405859899576 AEKPFYVNV 9 Unmodified _AEKPFYVNV_ 0 0 0 nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR nc|ENSG00000186716|P11274-2|BCR nc|ENSG00000186716|P11274-2|BCR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27734375 2 533.782025 1065.5495 -0.18263 -9.7487E-05 0.65471 0.00034947 0.47207 0.00025198 533.7822640464583 111.71 0.98331 107.28 106.89 107.87 -4.4231 77 27 4 0 0 0 0.11519 1 21972 21972 70.332 53.219 1 28120000 1457 7077 746 748 1738 1738 0.019343405859899576 AEKPFYVNV 9 Unmodified _AEKPFYVNV_ 0 0 0 nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR nc|ENSG00000186716|P11274-2|BCR nc|ENSG00000186716|P11274-2|BCR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2720336914062 2 533.782025 1065.5495 0.66445 0.00035467 -0.19712 -0.00010522 0.46733 0.00024945 533.7818246486004 111.46 0.97717 107.23 106.83 107.81 -4.2289 76 27 4 0 0 0 0.010502 1 21424 21424 103.42 63.462 1 18853000 1458 7077 746 748 1739 1739 0.019343405859899576 AEKPLRPLY 9 Unmodified _AEKPLRPLY_ 0 0 0 REV__ENSG00000164972|ENST00000297623|C9orf24 REV__ENSG00000164972|ENST00000297623|C9orf24 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7926025390625 2 543.818941 1085.62333 NaN NaN NaN NaN NaN NaN NaN 42.217 1 39.498 38.998 39.998 -2.7191 0 0 0 0.23508 1 7892 7892 4.756 0 1 + 1459 17732 747 749 1740 1740 0.08394308748324875 AEKPLRPLY 9 Unmodified _AEKPLRPLY_ 0 0 0 REV__ENSG00000164972|ENST00000297623|C9orf24 REV__ENSG00000164972|ENST00000297623|C9orf24 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7882690429688 2 543.818941 1085.62333 NaN NaN NaN NaN NaN NaN NaN 41.626 1 39.051 38.551 39.551 -2.5754 0 0 0 0.23508 1 7474 7474 7.2892 0.56607 1 + 1460 17732 747 749 1741 1741 0.08394308748324875 AEKPVLTAV 9 Unmodified _AEKPVLTAV_ 0 0 0 ENSG00000215817|ENST00000651890|ZC3H11B;nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000058673|ENST00000367210|ZC3H11A ENSG00000215817|ENST00000651890|ZC3H11B ENSG00000215817|ENST00000651890|ZC3H11B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 463.752197265625 2 464.279118 926.543683 0.35433 0.00016451 -0.46748 -0.00021704 -0.11316 -5.2537E-05 464.27886087345064 71.309 0.49411 67.842 67.556 68.05 -3.467 19 13 2 0 0 0 0.64253 1 13470 13470 2.4985 0 1 950210 1461 7752 748 750 1742 1742 0.07747242074310634 AEKPVLTAV 9 Unmodified _AEKPVLTAV_ 0 0 0 ENSG00000215817|ENST00000651890|ZC3H11B;nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000058673|ENST00000367210|ZC3H11A ENSG00000215817|ENST00000651890|ZC3H11B ENSG00000215817|ENST00000651890|ZC3H11B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.279118 926.543683 -0.18876 -8.7639E-05 -0.16017 -7.4362E-05 -0.34893 -0.000162 464.2789456067661 70.948 0.46204 67.699 67.495 67.957 -3.2492 -0.080846 0.00010333 NaN 2.4985 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1217200 1462 7752 748 750 0.07747242074310634 AEKPVLTAV 9 Unmodified _AEKPVLTAV_ 0 0 0 ENSG00000215817|ENST00000651890|ZC3H11B;nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000058673|ENST00000367210|ZC3H11A ENSG00000215817|ENST00000651890|ZC3H11B ENSG00000215817|ENST00000651890|ZC3H11B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.279118 926.543683 0.28852 0.00013395 -0.20009 -9.2898E-05 0.088427 4.1055E-05 464.27895819639616 71.398 0.4965 67.798 67.485 67.982 -3.5992 0.018703 6.6262E-05 NaN 2.4985 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1108700 1463 7752 748 750 0.07747242074310634 AEKPWWQV 8 Unmodified _AEKPWWQV_ 0 0 0 ENSG00000262919|ENST00000576892|CCNQ;ENST00000428076.1_1_13:19956755-19957193:+|nuORF ENSG00000262919|ENST00000576892|CCNQ ENSG00000262919|ENST00000576892|CCNQ MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2667236328125 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 16.85 1 15.578 15.078 16.078 -1.2722 0 0 0 0.21486 1 2448 2448 2.0598 0.21551 1 1464 7969 749 751 1743 1743 0.004054911343473577 AEKQATDVKP 10 Unmodified _AEKQATDVKP_ 0 0 0 MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant;MAP1B|p.E2165Gfs*3|1|0.32|ENSG00000131711|chr5:72199841-72199842|-/C|frameshift_variant;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant;ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.P752Tfs*35|2|0.37|ENSG00000131711|chr5:72195601-72195602|-/A|frameshift_variant;MAP1B|p.E871Afs*22|1|0.13|ENSG00000131711|chr5:72195965-72195966|TG/-|frameshift_variant MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7926635742188 2 543.793121 1085.57169 0.24053 0.0001308 0.46485 0.00025278 0.70538 0.00038358 543.7931465606404 15.712 0.51782 15.712 15.438 15.955 0 17 14 2 0 0 0 0.4204 1 2423 2423 29.437 8.8562 1 331040 1465 3689 750 752 1744 1744 0.032325202637593975 AEKQATDVKP 10 Unmodified _AEKQATDVKP_ 0 0 0 MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant;MAP1B|p.E2165Gfs*3|1|0.32|ENSG00000131711|chr5:72199841-72199842|-/C|frameshift_variant;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant;ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.P752Tfs*35|2|0.37|ENSG00000131711|chr5:72195601-72195602|-/A|frameshift_variant;MAP1B|p.E871Afs*22|1|0.13|ENSG00000131711|chr5:72195965-72195966|TG/-|frameshift_variant MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7940673828125 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 16.789 1 15.573 15.073 16.073 -1.2159 0 0 0 0.22588 1 2659 2659 10.151 0.076642 1 1466 3689 750 752 1745 1745 0.032325202637593975 AEKQDPGAL 9 Unmodified _AEKQDPGAL_ 0 0 0 REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2;REV__ENST00000472623.1_1_X:69646726-69652182:+|nuORF REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2578430175781 2 464.740357 927.46616 0.36173 0.00016811 -0.17664 -8.209E-05 0.1851 8.6022E-05 464.74042209011844 34.437 0.24644 32.222 32.088 32.334 -2.2158 9 6 2 0 0 0 0.81703 1 6050 6050 14.838 5.4551 1 465510 + 1467 15984;22057 751 753 1746 1746 -0.0004739586186133238 AEKQGNRGLA 10 Unmodified _AEKQGNRGLA_ 0 0 0 REV__nc|ENSG00000150347|Q14865-3|ARID5B REV__nc|ENSG00000150347|Q14865-3|ARID5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2627563476562 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 97.24 1 97.24 96.74 97.74 0 0 0 0 0.22588 1 19055 19055 8.7454 0.15213 1 + 1468 17028 752 754 1747 1747 0.03238189043690909 AEKQKRYL 8 Unmodified _AEKQKRYL_ 0 0 0 REV__CEP350|p.K1725Nfs*24|1|0.43|ENSG00000135837|chr1:180053928-180053928|A/-|frameshift_variant REV__CEP350|p.K1725Nfs*24|1|0.43|ENSG00000135837|chr1:180053928-180053928|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.1858825683594 3 345.869703 1034.58728 0.35822 0.0001239 -0.021682 -7.4992E-06 0.33654 0.0001164 345.86956885684674 22.373 0.30762 20.899 20.763 21.07 -1.4742 14 8 2 0 0 0 0.89628 1 3794 3794 0.62683 0 1 443290 + 1469 13381 753 755 1748 1748 0.07136851571453917 AEKQMLVS 8 Unmodified _AEKQMLVS_ 0 0 0 nc|ENSG00000117650|P51955-3|NEK2;nc|ENSG00000117650|P51955-2|NEK2;nc|ENSG00000117650|P51955-4|NEK2;ENSG00000117650|ENST00000366999|NEK2 nc|ENSG00000117650|P51955-3|NEK2 nc|ENSG00000117650|P51955-3|NEK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7546081542969 2 453.241678 904.468803 0.54073 0.00024508 -0.11424 -5.1777E-05 0.4265 0.00019331 453.2419684497549 112.42 0.79984 108.15 107.87 108.67 -4.2725 41 22 3 0 0 0 0.97173 1 21639 21639 7.9102 0 1 1382300 1470 2998 754 756 1749 1749 0.01274736271443544 AEKQMLVS 8 Unmodified _AEKQMLVS_ 0 0 0 nc|ENSG00000117650|P51955-3|NEK2;nc|ENSG00000117650|P51955-2|NEK2;nc|ENSG00000117650|P51955-4|NEK2;ENSG00000117650|ENST00000366999|NEK2 nc|ENSG00000117650|P51955-3|NEK2 nc|ENSG00000117650|P51955-3|NEK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 453.241678 904.468803 -0.034975 -1.5852E-05 1.1068 0.00050166 1.0718 0.00048581 453.24232866216755 112.77 0.50022 108.24 108.04 108.54 -4.5259 0.048856 0.00039135 NaN 4.3292 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2123000 1471 2998 754 756 0.01274736271443544 AEKQPADP 8 Unmodified _AEKQPADP_ 0 0 0 REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 428.142333984375 2 428.213975 854.413397 NaN NaN NaN NaN NaN NaN NaN 39.792 1 37.243 36.743 37.743 -2.5491 0 0 0 0.21486 1 7401 7401 9.3474 3.587 1 + 1472 22349 755 757 1750 1750 -0.019633539246797227 AEKQQRLEEEL 11 Unmodified _AEKQQRLEEEL_ 0 0 0 REV__ENSG00000088325|ENST00000300403|TPX2 REV__ENSG00000088325|ENST00000300403|TPX2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2374267578125 3 458.240412 1371.69941 NaN NaN NaN NaN NaN NaN NaN 48.641 1 45.642 45.142 46.142 -2.999 0 0 0 0.22632 1 8882 8882 0.026206 0 1 + 1473 14512 756 758 1751 1751 0.028426160671187972 AEKRAALSPT 10 Unmodified _AEKRAALSPT_ 0 0 0 REV__ENST00000603798.5_1_12:51664324-51664417:-|nuORF REV__ENST00000603798.5_1_12:51664324-51664417:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27099609375 2 522.29583 1042.57711 NaN NaN NaN NaN NaN NaN NaN 20.653 1 18.932 18.432 19.432 -1.7211 0 0 0 0.22588 1 3188 3188 5.7319 1.7875 1 + 1474 23437 757 759 1752 1752 0.05752243846222882 AEKRQGSP 8 Unmodified _AEKRQGSP_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2344970703125 2 436.732866 871.451179 0.14125 6.1688E-05 0.5717 0.00024968 0.71295 0.00031137 436.73287743116816 20.482 0.42862 20.482 20.313 20.742 0 23 11 3 0 0 0 0.40222 1 3400 3400 32.305 8.2849 1 1508800 + 1475 14875 758 760 1753 1753 0.010311570608109832 AEKRRKKRWRR 11 Unmodified _AEKRRKKRWRR_ 0 0 0 REV__nc|ENSG00000290320|P0DW85|H2BN1 REV__nc|ENSG00000290320|P0DW85|H2BN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6795654296875 3 523.993953 1568.96003 NaN NaN NaN NaN NaN NaN NaN 95.953 1 91.762 91.262 92.262 -4.1911 0 0 0 0.23698 1 18317 18317 0.073264 0 1 + 1476 24323 759 761 1754 1754 0.19830710418978015 AEKRRKKRWRR 11 Unmodified _AEKRRKKRWRR_ 0 0 0 REV__nc|ENSG00000290320|P0DW85|H2BN1 REV__nc|ENSG00000290320|P0DW85|H2BN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4110107421875 2 785.487291 1568.96003 NaN NaN NaN NaN NaN NaN NaN 157.36 1 152.07 151.57 152.57 -5.2854 0 0 0 0.23698 1 30534 30534 1.1933 0 1 + 1477 24323 759 761 1755 1755 0.19830710418978015 AEKSVEIFKAG 11 Unmodified _AEKSVEIFKAG_ 0 0 0 REV__ENSG00000177666|ENST00000336615|PNPLA2 REV__ENSG00000177666|ENST00000336615|PNPLA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2547607421875 2 589.824421 1177.63429 NaN NaN NaN NaN NaN NaN NaN 62.421 1 62.421 61.921 62.921 0 0 0 0 0.23379 1 11987 11987 5.2969 0.96765 1 + 1478 18568 760 762 1756 1756 0.052576663319541694 AEKSVSGIFCY 11 Unmodified _AEKSVSGIFCY_ 0 0 0 ENST00000497479.1_1_18:74809335-74845477:-|nuORF;ENST00000487778.5_1_18:74809335-74844688:-|nuORF ENST00000497479.1_1_18:74809335-74845477:-|nuORF ENST00000497479.1_1_18:74809335-74845477:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2869262695312 2 602.289356 1202.56416 NaN NaN NaN NaN NaN NaN NaN 102.24 1 102.24 101.74 102.74 0 0 0 0 0.22943 1 20080 20080 8.7454 3.0136 1 1479 10474 761 763 1757 1757 -0.029019553281386834 AEKTKIPAV 9 Unmodified _AEKTKIPAV_ 0 0 0 CON__P02754 CON__P02754 CON__P02754 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2442932128906 2 478.792392 955.570232 0.10609 5.0793E-05 -0.099884 -4.7824E-05 0.0062023 2.9696E-06 478.7923035548455 91.806 1.3702 87.998 87.548 88.918 -3.8083 120 39 5 0 0 0 0.68435 1 17633 17633 7.2892 0 1 73589000 + 1480 655 762 764 1758 1758 0.0906693096563913 AEKTKSKK 8 Unmodified _AEKTKSKK_ 0 0 0 REV__ENST00000455028.1_1_21:36509013-36511212:+|nuORF REV__ENST00000455028.1_1_21:36509013-36511212:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24090576171875 2 460.282192 918.549831 NaN NaN NaN NaN NaN NaN NaN 107.69 1 103.56 103.06 104.06 -4.135 0 0 0 0.21486 1 20715 20715 2.5775 0 1 + 1481 21843 763 765 1759 1759 0.08729760305845957 AEKTSARS 8 Unmodified _AEKTSARS_ 0 0 0 ENST00000257749.8_2_6:90661424-90718349:-|nuORF ENST00000257749.8_2_6:90661424-90718349:-|nuORF ENST00000257749.8_2_6:90661424-90718349:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2373046875 2 425.224874 848.435195 NaN NaN NaN NaN NaN NaN NaN 35.34 1 32.947 32.447 33.447 -2.3938 0 0 0 0.21452 1 6507 6507 13.508 0 1 1482 8267 764 766 1760 1760 0.004914508238925919 AEKTSARS 8 Unmodified _AEKTSARS_ 0 0 0 ENST00000257749.8_2_6:90661424-90718349:-|nuORF ENST00000257749.8_2_6:90661424-90718349:-|nuORF ENST00000257749.8_2_6:90661424-90718349:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.238525390625 2 425.224874 848.435195 NaN NaN NaN NaN NaN NaN NaN 35.041 1 32.788 32.288 33.288 -2.2527 0 0 0 0.21486 1 6161 6161 6.2058 0.44535 1 1483 8267 764 766 1761 1761 0.004914508238925919 AEKVCQNH 8 Unmodified _AEKVCQNH_ 0 0 0 ENST00000407916.2_1_7:55002433-55002823:+|nuORF ENST00000407916.2_1_7:55002433-55002823:+|nuORF ENST00000407916.2_1_7:55002433-55002823:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2498474121094 2 464.718901 927.42325 -0.20232 -9.4021E-05 1.1882 0.00055218 0.98589 0.00045816 464.7191682227249 71.743 0.56614 68.493 68.166 68.732 -3.2492 25 15 2 0 0 0 0.69031 1 13974 13974 15.847 4.2069 1 1083300 1484 9554 765 767 1762 1762 -0.04336489190939119 AEKVLQKAA 9 Unmodified _AEKVLQKAA_ 0 0 0 REV__nc|ENSG00000167216|Q8IYT4-2|KATNAL2 REV__nc|ENSG00000167216|Q8IYT4-2|KATNAL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7434387207031 2 479.290017 956.565481 -0.3012 -0.00014436 0.28708 0.0001376 -0.014118 -6.7666E-06 479.29006247618935 19.52 0.23742 18.195 18.074 18.312 -1.3251 9 6 2 0 0 0 0.71913 1 2981 2981 26.268 2.4784 1 439820 + 1485 17912 766 768 1763 1763 0.08546046822880271 AEKVLQKAA 9 Unmodified _AEKVLQKAA_ 0 0 0 REV__nc|ENSG00000167216|Q8IYT4-2|KATNAL2 REV__nc|ENSG00000167216|Q8IYT4-2|KATNAL2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 479.290017 956.565481 -0.96957 -0.0004647 1.1603 0.00055614 0.19077 9.1435E-05 479.29063323590526 19.824 0.21225 18.189 18.083 18.295 -1.6351 -0.0028482 0.00052024 NaN 26.268 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 355040 + 1486 17912 766 768 0.08546046822880271 AEKWFLDA 8 Unmodified _AEKWFLDA_ 0 0 0 nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2698669433594 2 490.247818 978.481082 0.18798 9.2155E-05 0.18624 9.1302E-05 0.37421 0.00018346 490.24781414184486 130.85 0.57301 130.85 130.58 131.15 0 23 15 2 0 0 0 0.13856 1 25866 25866 55.503 22.717 1 3119300 1487 3591 767 769 1764 1764 -0.009019039938721107 AEKWFLDA 8 Unmodified _AEKWFLDA_ 0 0 0 nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2683410644531 2 490.247818 978.481082 0.11728 5.7497E-05 0.14904 7.3068E-05 0.26632 0.00013056 490.24774813907794 135.46 0.66748 130.82 130.44 131.11 -4.6399 41 18 3 0 0 0 8448 1 26694 26694 33.593 30.711 1 3344200 1488 3591 767 769 1765 1765 -0.009019039938721107 AEKWFLDA 8 Unmodified _AEKWFLDA_ 0 0 0 nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25775146484375 2 490.247818 978.481082 0.15072 7.3889E-05 0.28502 0.00013973 0.43573 0.00021362 490.24787929767837 135.54 0.67215 130.65 130.4 131.07 -4.8951 32 18 2 0 0 0 0.077443 2 26047 26031;26047 72.968 25.219 1 2404800 1489 3591 767 769 1766;1767 1767 -0.009019039938721107 AEKWFLDA 8 Unmodified _AEKWFLDA_ 0 0 0 nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.7398376464844 2 490.247818 978.481082 -0.019769 -9.6916E-06 0.45367 0.00022241 0.4339 0.00021272 490.24796232527984 135.48 0.71201 130.65 130.27 130.98 -4.8307 36 19 3 0 0 0 8448 1 26109 26109 39.111 36.48 1 2395500 1490 3591 767 769 1768 1768 -0.009019039938721107 AEKYSFMAT 9 Unmodified _AEKYSFMAT_ 0 0 0 ENSG00000168710|ENST00000369799|AHCYL1;ENST00000475081.1_1_1:110527674-110555049:+|nuORF;ENST00000393614.8_1_1:110527389-110528040:+|nuORF;AHCYL1|p.G231Efs*3|1|0.09|ENSG00000168710|chr1:110015437-110015437|G/-|frameshift_variant ENSG00000168710|ENST00000369799|AHCYL1 ENSG00000168710|ENST00000369799|AHCYL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6925659179688 2 524.244418 1046.47428 -0.4935 -0.00025872 3.3296 0.0017455 2.8361 0.0014868 524.2449181534962 81.07 0.56626 77.231 76.977 77.543 -3.8392 23 15 2 0 0 0 0.54058 1 15402 15402 13.535 13.127 1 1246600 1491 5928 768 770 1769 1769 -0.04709584936745159 AEKYSFMAT 9 Unmodified _AEKYSFMAT_ 0 0 0 ENSG00000168710|ENST00000369799|AHCYL1;ENST00000475081.1_1_1:110527674-110555049:+|nuORF;ENST00000393614.8_1_1:110527389-110528040:+|nuORF;AHCYL1|p.G231Efs*3|1|0.09|ENSG00000168710|chr1:110015437-110015437|G/-|frameshift_variant ENSG00000168710|ENST00000369799|AHCYL1 ENSG00000168710|ENST00000369799|AHCYL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.244418 1046.47428 -0.15487 -8.1189E-05 4.8418 0.0025383 4.6869 0.0024571 524.2448371952372 80.896 0.59578 77.208 76.86 77.456 -3.6879 -0.059818 0.00095433 NaN 13.535 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1331400 1492 5928 768 770 -0.04709584936745159 AEKYYDLAA 9 Unmodified _AEKYYDLAA_ 0 0 0 ENSG00000179104|ENST00000321196|TMTC2 ENSG00000179104|ENST00000321196|TMTC2 ENSG00000179104|ENST00000321196|TMTC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2706298828125 2 522.25584 1042.49713 -0.51421 -0.00026855 0.49087 0.00025636 -0.023347 -1.2193E-05 522.2560790170347 74.245 0.62437 70.568 70.242 70.866 -3.6764 47 17 3 0 0 0 0.60663 1 14013 14013 32.786 22.712 1 10932000 1493 6611 769 771 1770 1770 -0.022422425476406715 AEKYYDLAA 9 Unmodified _AEKYYDLAA_ 0 0 0 ENSG00000179104|ENST00000321196|TMTC2 ENSG00000179104|ENST00000321196|TMTC2 ENSG00000179104|ENST00000321196|TMTC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2708129882812 2 522.25584 1042.49713 0.42236 0.00022058 -0.37504 -0.00019587 0.047319 2.4712E-05 522.255591420392 74.149 0.80124 70.555 70.187 70.988 -3.594 55 22 3 0 0 0 0.545 1 14066 14066 36.506 11.107 1 15472000 1494 6611 769 771 1771 1771 -0.022422425476406715 AELACLWEFY 10 Unmodified _AELACLWEFY_ 0 0 0 tr|U7SZQ6|U7SZQ6_FUSNUphosphoserinephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00833PE=4SV=1 tr|U7SZQ6|U7SZQ6_FUSNUphosphoserinephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00833PE=4SV=1 tr|U7SZQ6|U7SZQ6_FUSNUphosphoserinephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00833PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.763427734375 2 622.78645 1243.55835 NaN NaN NaN NaN NaN NaN NaN 120.64 1 116.17 115.67 116.67 -4.467 0 0 0 0.22588 1 23228 23228 7.2892 0.65886 1 1495 26303 770 772 1772 1772 -0.05369053839831395 AELAGFHK 8 Unmodified _AELAGFHK_ 0 0 0 ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000497693.1_1_9:37430482-37431094:+|nuORF;nc|ENSG00000137106|Q9UBQ7-2|GRHPR ENST00000377824.8_1_9:37422741-37431094:+|nuORF ENST00000377824.8_1_9:37422741-37431094:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22601318359375 2 436.734877 871.455202 -0.19894 -8.6882E-05 -3.5149 -0.0015351 -3.7139 -0.001622 436.73297277204705 21.741 0.45293 20.356 20.211 20.664 -1.3847 19 12 2 0 0 0 8448 1 3455 3455 3.5871 0 1 858770 1496 9269 771 773 1773 1773 0.014332465545066952 AELAGLETSA 10 Unmodified _AELAGLETSA_ 0 0 0 sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1;sp|P16793|UL52_HCMVAPackagingproteinUL32homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL52PE=3SV=1 sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1 sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2414245605469 2 481.245472 960.476391 -0.039409 -1.8965E-05 0.02721 1.3095E-05 -0.012199 -5.8708E-06 481.24538744658315 74.415 2.2491 71.051 69.582 71.831 -3.3643 164 63 7 0 0 0 0.74842 1 14348 14348 6.2058 0 1 81098000 1497 25760 772 774 1774 1774 -0.005428329272831434 AELAKLRQ 8 Unmodified _AELAKLRQ_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.23785400390625 2 464.782359 927.550165 0.17303 8.0419E-05 -0.18924 -8.7957E-05 -0.016219 -7.5382E-06 464.7822589979127 24.082 0.3347 24.082 23.899 24.234 0 15 9 2 0 0 0 0.68128 1 4102 4102 16.942 0 1 1353300 1498 3396 773 775 1775 1775 0.08349180025697933 AELALGPP 8 Unmodified _AELALGPP_ 0 0 0 REV__ENST00000469111.5_2_3:127306961-127309402:-|nuORF REV__ENST00000469111.5_2_3:127306961-127309402:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 384.1922302246094 2 384.218529 766.422505 -0.46459 -0.0001785 0.6977 0.00026807 0.23312 8.9568E-05 384.21873831783404 89.334 0.52509 85.556 85.313 85.839 -3.7779 25 14 2 0 0 0 0.73426 1 17074 17074 9.3474 0 1 1292900 + 1499 22005 774 776 1776 1776 0.0299503943167565 AELALGPP 8 Unmodified _AELALGPP_ 0 0 0 REV__ENST00000469111.5_2_3:127306961-127309402:-|nuORF REV__ENST00000469111.5_2_3:127306961-127309402:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 384.218529 766.422505 -0.10883 -4.1815E-05 0.19982 7.6775E-05 0.090988 3.4959E-05 384.2185397699829 85.533 0.68051 85.533 85.252 85.933 0 -0.016356 -4.962E-05 NaN 9.3474 36 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1874900 + 1500 22005 774 776 0.0299503943167565 AELALGPP 8 Unmodified _AELALGPP_ 0 0 0 REV__ENST00000469111.5_2_3:127306961-127309402:-|nuORF REV__ENST00000469111.5_2_3:127306961-127309402:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 384.218529 766.422505 -0.30382 -0.00011673 0.28032 0.0001077 -0.023504 -9.0306E-06 384.21854692821597 89.382 0.56026 85.526 85.204 85.765 -3.8561 -0.023641 1.2236E-05 NaN 9.3474 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2117400 + 1501 22005 774 776 0.0299503943167565 AELALGPP 8 Unmodified _AELALGPP_ 0 0 0 REV__ENST00000469111.5_2_3:127306961-127309402:-|nuORF REV__ENST00000469111.5_2_3:127306961-127309402:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 384.218529 766.422505 0.38239 0.00014692 -0.17101 -6.5704E-05 0.21139 8.1219E-05 384.2184052321899 89.627 0.53661 85.583 85.31 85.847 -4.0443 0.033634 -0.00033458 NaN 9.3474 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 710510 + 1502 22005 774 776 0.0299503943167565 AELALGPP 8 Unmodified _AELALGPP_ 0 0 0 REV__ENST00000469111.5_2_3:127306961-127309402:-|nuORF REV__ENST00000469111.5_2_3:127306961-127309402:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 384.218529 766.422505 -0.46459 -0.0001785 0.6977 0.00026807 0.23312 8.9568E-05 384.21873831783404 89.334 0.52509 85.556 85.313 85.839 -3.7779 0.0063628 0.00033297 NaN 9.3474 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1292900 + 1503 22005 774 776 0.0299503943167565 AELAPDSNDGY 11 Unmodified _AELAPDSNDGY_ 0 0 0 REV__nc|ENSG00000080845|Q9Y2H0-3|DLGAP4 REV__nc|ENSG00000080845|Q9Y2H0-3|DLGAP4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.337158203125 2 576.2462 1150.47785 NaN NaN NaN NaN NaN NaN NaN 31.057 1 28.963 28.463 29.463 -2.0936 0 0 0 0.23324 1 5337 5337 5.7319 0.97584 1 + 1504 14419 775 777 1777 1777 -0.09137243629174918 AELAQQRAA 9 Unmodified _AELAQQRAA_ 0 0 0 nc|ENSG00000143554|Q5K4L6-3|SLC27A3;SLC27A3|p.P210Lfs*73|1|0.43|ENSG00000143554|chr1:153775982-153775982|C/-|frameshift_variant;SLC27A3|p.Q324Rfs*3|1|0.37|ENSG00000143554|chr1:153776674-153776674|C/-|frameshift_variant;ENST00000468403.1_1_1:153747811-153748660:+|nuORF;SLC27A3|p.F459Lfs*16|1|0.57|ENSG00000143554|chr1:153778232-153778232|T/-|frameshift_variant;nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3 nc|ENSG00000143554|Q5K4L6-3|SLC27A3 nc|ENSG00000143554|Q5K4L6-3|SLC27A3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.742919921875 2 479.259248 956.503943 -0.11146 -5.3418E-05 0.37078 0.0001777 0.25932 0.00012428 479.2593653996637 18.026 0.24766 18.026 17.878 18.126 0 13 6 3 0 0 0 0.14967 1 2871 2871 58.679 10.93 1 1031600 1505 4504 776 778 1778 1778 0.023951151236133228 AELAQQRAA 9 Unmodified _AELAQQRAA_ 0 0 0 nc|ENSG00000143554|Q5K4L6-3|SLC27A3;SLC27A3|p.P210Lfs*73|1|0.43|ENSG00000143554|chr1:153775982-153775982|C/-|frameshift_variant;SLC27A3|p.Q324Rfs*3|1|0.37|ENSG00000143554|chr1:153776674-153776674|C/-|frameshift_variant;ENST00000468403.1_1_1:153747811-153748660:+|nuORF;SLC27A3|p.F459Lfs*16|1|0.57|ENSG00000143554|chr1:153778232-153778232|T/-|frameshift_variant;nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3 nc|ENSG00000143554|Q5K4L6-3|SLC27A3 nc|ENSG00000143554|Q5K4L6-3|SLC27A3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.259248 956.503943 0.1173 5.6219E-05 -0.0023036 -1.104E-06 0.115 5.5115E-05 479.2591573787705 19.332 0.21584 17.936 17.813 18.029 -1.3966 -0.035055 -0.00026825 NaN 58.679 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 775700 1506 4504 776 778 0.023951151236133228 AELAQQRAA 9 Unmodified _AELAQQRAA_ 0 0 0 nc|ENSG00000143554|Q5K4L6-3|SLC27A3;SLC27A3|p.P210Lfs*73|1|0.43|ENSG00000143554|chr1:153775982-153775982|C/-|frameshift_variant;SLC27A3|p.Q324Rfs*3|1|0.37|ENSG00000143554|chr1:153776674-153776674|C/-|frameshift_variant;ENST00000468403.1_1_1:153747811-153748660:+|nuORF;SLC27A3|p.F459Lfs*16|1|0.57|ENSG00000143554|chr1:153778232-153778232|T/-|frameshift_variant;nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3 nc|ENSG00000143554|Q5K4L6-3|SLC27A3 nc|ENSG00000143554|Q5K4L6-3|SLC27A3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.259248 956.503943 -0.32265 -0.00015463 0.45521 0.00021816 0.13256 6.3531E-05 479.25939062376693 19.276 0.21276 17.95 17.755 17.968 -1.3251 -0.020259 0.00017029 NaN 58.679 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 587420 1507 4504 776 778 0.023951151236133228 AELAQRVAA 9 Unmodified _AELAQRVAA_ 0 0 0 nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1 nc|ENSG00000131626|Q13136-2|PPFIA1 nc|ENSG00000131626|Q13136-2|PPFIA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.239990234375 2 464.764166 927.513779 0.013129 6.1019E-06 -0.14683 -6.8242E-05 -0.1337 -6.214E-05 464.76404948592807 38.443 0.42 36.001 35.845 36.265 -2.4419 19 11 2 0 0 0 0.48307 1 6882 6882 40.239 9.6027 1 1674800 1508 3685 777 779 1779 1779 0.047123031289856954 AELARANAL 9 Unmodified _AELARANAL_ 0 0 0 REV__GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant REV__GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2389221191406 2 464.764166 927.513779 0.17408 8.0905E-05 0.40461 0.00018805 0.57869 0.00026895 464.7640667868593 36.074 0.42814 36.074 35.925 36.353 0 17 11 2 0 0 0 0.47479 1 6638 6638 37.974 0 1 1402400 + 1509 18959 778 780 1780 1780 0.047123031289856954 AELARANAL 9 Unmodified _AELARANAL_ 0 0 0 REV__GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant REV__GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2394714355469 2 464.764166 927.513779 -0.39386 -0.00018305 0.73802 0.000343 0.34415 0.00015995 464.7642845305653 38.435 0.52631 35.886 35.699 36.225 -2.5491 17 14 2 0 0 0 0.47479 1 7152 7152 30.637 0 1 1967500 + 1510 18959 778 780 1781 1781 0.047123031289856954 AELARANAL 9 Unmodified _AELARANAL_ 0 0 0 REV__GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant REV__GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2397766113281 2 464.764166 927.513779 0.1853 8.6122E-05 -0.23214 -0.00010789 -0.046841 -2.177E-05 464.76395850044065 38.433 0.49064 36.028 35.775 36.266 -2.4049 20 13 2 0 0 0 0.47479 1 6828 6828 37.974 0 1 1169000 + 1511 18959 778 780 1782 1782 0.047123031289856954 AELARYLET 9 Unmodified _AELARYLET_ 0 0 0 REV__ENST00000596555.1_1_19:7852809-7854509:+|nuORF REV__ENST00000596555.1_1_19:7852809-7854509:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2826538085938 2 533.282389 1064.55022 0.3246 0.0001731 1.1267 0.00060085 1.4513 0.00077396 533.2828251442953 107.6 0.71457 103.19 102.76 103.47 -4.4121 34 20 2 0 0 0 0.16539 1 20627 20627 41.956 3.78 1 2395700 + 1512 23382 779 781 1783 1783 0.020531352350417365 AELATGTPPV 10 Unmodified _AELATGTPPV_ 0 0 0 BOC|p.Q445Nfs*66|1|0.29|ENSG00000144857|chr3:113274468-113274468|G/-|frameshift_variant;nc|ENSG00000144857|Q9BWV1|BOC;ENSG00000144857|ENST00000682979|BOC BOC|p.Q445Nfs*66|1|0.29|ENSG00000144857|chr3:113274468-113274468|G/-|frameshift_variant BOC|p.Q445Nfs*66|1|0.29|ENSG00000144857|chr3:113274468-113274468|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7403259277344 2 478.258382 954.502212 -0.0015078 -7.2111E-07 0.13106 6.2681E-05 0.12955 6.196E-05 478.25839517452437 115.19 0.96752 110.71 110.18 111.15 -4.4726 53 27 2 0 0 0 0.57735 1 22786 22786 20.454 2.3073 1 21465000 1513 325 780 782 1784 1784 0.02314061314996252 AELATSYVS 9 Unmodified _AELATSYVS_ 0 0 0 MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant;ENSG00000171495|ENST00000399564|MROH2B;MROH2B|p.S691Lfs*6|1|0.45|ENSG00000171495|chr5:41038879-41038879|A/-|frameshift_variant MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1676940917969 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 104.93 1 104.93 104.43 105.43 0 0 0 0 0.23508 1 20624 20624 1.0715 0 1 1514 6151 781 783 1785 1785 -0.017222179560008044 AELCLCRL 8 Unmodified _AELCLCRL_ 0 0 0 ENST00000559153.5_1_15:40845847-40845910:-|nuORF ENST00000559153.5_1_15:40845847-40845910:-|nuORF ENST00000559153.5_1_15:40845847-40845910:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2276306152344 2 460.738248 919.461943 0.57229 0.00026368 0.39135 0.00018031 0.96364 0.00044399 460.738413978291 120.46 1.0459 115.82 115.35 116.39 -4.645 38 29 2 0 0 0 0.9455 1 23176 23176 16.942 16.942 1 1488500 1515 11273 782 784 1786 1786 -0.0010089988077197631 AELCLCRL 8 Unmodified _AELCLCRL_ 0 0 0 ENST00000559153.5_1_15:40845847-40845910:-|nuORF ENST00000559153.5_1_15:40845847-40845910:-|nuORF ENST00000559153.5_1_15:40845847-40845910:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.738248 919.461943 0.18903 8.7092E-05 0.21639 9.9701E-05 0.40542 0.00018679 460.73841241532534 120.24 0.51952 115.72 115.47 115.99 -4.5221 -0.049474 -9.5307E-05 NaN 16.942 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 759590 1516 11273 782 784 -0.0010089988077197631 AELCMKVF 8 Unmodified _AELCMKVF_ 0 0 0 REV__ENSG00000163320|ENST00000482016|CGGBP1 REV__ENSG00000163320|ENST00000482016|CGGBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.185546875 3 314.159208 939.455795 NaN NaN NaN NaN NaN NaN NaN 72.163 1 72.163 71.663 72.663 0 0 0 0 0.21486 1 13986 13986 3.5965 0 1 + 1517 17559 783 785 1787 1787 -0.01635418112289244 AELCVTUSS 9 Unmodified _AELCVTUSS_ 0 0 0 ENSG00000073169|ENST00000380903|SELENOO ENSG00000073169|ENST00000380903|SELENOO ENSG00000073169|ENST00000380903|SELENOO MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24365234375 2 480.665929 959.317305 -0.060254 -2.8962E-05 -1.1204 -0.00053851 -1.1806 -0.00056748 480.6679413349735 48.892 0.87448 46.023 45.693 46.568 -2.869 127 24 7 0 0 0 0.60489 1 9213 9213 0 0 0 22561000 1518 1483 784 786 1788 1788 -0.1639811338200161 AELDEDSESS 10 Unmodified _AELDEDSESS_ 0 0 0 ENSG00000147234|ENST00000683843|FRMPD3 ENSG00000147234|ENST00000683843|FRMPD3 ENSG00000147234|ENST00000683843|FRMPD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2744750976562 2 541.212023 1080.40949 -0.27282 -0.00014765 -0.99285 -0.00053734 -1.2657 -0.000685 541.2114390845114 107.92 0.69515 103.6 103.21 103.9 -4.32 59 19 4 0 0 0 0.90091 1 21178 21178 10.074 10.074 1 8613700 1519 4692 785 787 1789 1789 -0.12749532999714575 AELDEIKAKY 10 Unmodified _AELDEIKAKY_ 0 0 0 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2512817382812 2 590.316428 1178.6183 NaN NaN NaN NaN NaN NaN NaN 65.968 1 62.685 62.185 63.185 -3.2832 0 0 0 0.22588 1 12408 12408 6.7232 0 1 + 1520 18497 786 788 1790 1790 0.03613960095049151 AELDELEKP 9 Unmodified _AELDELEKP_ 0 0 0 REV__nc|ENSG00000196504|O75400-3|PRPF40A REV__nc|ENSG00000196504|O75400-3|PRPF40A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2798461914062 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 17.413 1 16.102 15.602 16.602 -1.3109 0 0 0 0.23508 1 2786 2786 6.7232 1.4263 1 + 1521 24227 787 789 1791 1791 -0.001302772387589357 AELDKTNKF 9 Unmodified _AELDKTNKF_ 0 0 0 nc|ENSG00000145819|Q9UNA1|ARHGAP26;ENSG00000145819|ENST00000645722|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2687377929688 2 533.282389 1064.55022 0.75738 0.0004039 1.3443 0.00071688 2.1017 0.0011208 533.2827773165963 107.28 0.71266 103.15 102.84 103.56 -4.135 34 20 3 0 0 0 0.27986 1 20627 20627 32.786 4.2912 1 2144800 1522 12368 788 790 1792 1792 0.02053135235018999 AELDNIRV 8 Unmodified _AELDNIRV_ 0 0 0 REV__TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant REV__TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2563171386719 2 465.256174 928.497795 0.10396 4.8367E-05 0.041142 1.9142E-05 0.1451 6.7509E-05 465.2561819567488 53.761 1.3077 53.761 53.422 54.729 0 65 36 2 0 0 0 0.25515 1 10340 10340 39.957 0 1 3925000 + 1523 14167 789 791 1793 1793 0.03068596892092046 AELDPSIAV 9 Unmodified _AELDPSIAV_ 0 0 0 nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000460211.5_1_2:242607386-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-3|ATG4B;nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;ENST00000479941.1_1_2:242607971-242608235:+|nuORF;ENST00000475693.1_1_2:242607884-242611676:+|nuORF nc|ENSG00000168397|Q9Y4P1-6|ATG4B nc|ENSG00000168397|Q9Y4P1-6|ATG4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2384033203125 2 457.745108 913.475663 0.25463 0.00011656 -0.078548 -3.5955E-05 0.17608 8.0602E-05 457.74496102563955 113.5 1.042 113.5 112.97 114.01 0 50 29 2 0 0 0 0.1793 1 22374 22374 39.957 9.7325 1 1951700 1524 5904 790 792 1794 1794 0.015463724236610688 AELDPSIAV 9 Unmodified _AELDPSIAV_ 0 0 0 nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000460211.5_1_2:242607386-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-3|ATG4B;nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;ENST00000479941.1_1_2:242607971-242608235:+|nuORF;ENST00000475693.1_1_2:242607884-242611676:+|nuORF nc|ENSG00000168397|Q9Y4P1-6|ATG4B nc|ENSG00000168397|Q9Y4P1-6|ATG4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22503662109375 2 457.745108 913.475663 0.39159 0.00017925 -0.18462 -8.4511E-05 0.20697 9.4739E-05 457.7449920393597 118.25 0.93697 113.64 113.1 114.03 -4.6106 45 25 2 0 0 0 0.30056 1 22687 22687 8.9129 6.2817 1 1996100 1525 5904 790 792 1795 1795 0.015463724236610688 AELDSKRLY 9 Unmodified _AELDSKRLY_ 0 0 0 REV__nc|ENSG00000290966|A6NCN2|KRT87P REV__nc|ENSG00000290966|A6NCN2|KRT87P MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77587890625 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 87.913 1 84.163 83.663 84.663 -3.7501 0 0 0 0.23508 1 16821 16821 11.64 0 1 + + 1526 13513 791 793 1796 1796 0.03372824126381602 AELEAANLS 9 Unmodified _AELEAANLS_ 0 0 0 ENSG00000188620|ENST00000357878|HMX3 ENSG00000188620|ENST00000357878|HMX3 ENSG00000188620|ENST00000357878|HMX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 919.461181640625 1 917.457453 916.450176 0.66482 0.00060994 -0.52642 -0.00048297 0.13839 0.00012697 917.4569275619457 51.166 0.97158 51.166 50.676 51.648 0 58 27 4 0 0 0 0.31714 1 9718 9718 30.637 0 1 25642000 1527 7182 792 794 1797 1797 -0.011391020987730371 AELEAANMA 9 Unmodified _AELEAANMA_ 0 0 0 ENSG00000188816|ENST00000339992|HMX2;HMX2|p.S209L|1|0.43|ENSG00000188816|chr10:123149927-123149927|C/T|missense_variant ENSG00000188816|ENST00000339992|HMX2 ENSG00000188816|ENST00000339992|HMX2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2303161621094 2 460.213117 918.411682 NaN NaN NaN NaN NaN NaN NaN 42.077 1 39.471 38.971 39.971 -2.606 0 0 0 0.22251 1 7560 7560 16.942 1.0951 1 1528 7197 793 795 1798 1798 -0.050787310049372536 AELEEKGHSA 10 Unmodified _AELEEKGHSA_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.564697265625 3 357.508611 1069.504 -0.91806 -0.00032821 0.77186 0.00027595 -0.1462 -5.2267E-05 357.5088628672671 14.964 0.21154 13.85 13.744 13.956 -1.1142 11 5 3 0 0 0 0.68404 1 2284 2284 30.431 11.71 1 1287600 1529 4836 794 796 1799 1799 -0.027969296670335098 AELEGLVRA 9 Unmodified _AELEGLVRA_ 0 0 0 NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant;nc|ENSG00000073969|P46459-2|NSF;ENSG00000073969|ENST00000398238|NSF NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7325134277344 2 479.271824 956.529095 0.045959 2.2027E-05 0.046066 2.2078E-05 0.092024 4.4105E-05 479.27177172193086 94.87 0.70509 90.821 90.463 91.168 -4.0496 48 19 3 0 0 0 0.040668 1 18599 18599 70.332 14.155 1 7552400 1530 1491 795 797 1800 1800 0.049091699261907706 AELEGLVRA 9 Unmodified _AELEGLVRA_ 0 0 0 NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant;nc|ENSG00000073969|P46459-2|NSF;ENSG00000073969|ENST00000398238|NSF NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73193359375 2 479.271824 956.529095 0.16602 7.9568E-05 -0.1054 -5.0515E-05 0.060619 2.9053E-05 479.2717595228524 95.015 0.80756 90.824 90.438 91.245 -4.1911 51 22 3 0 0 0 0.078741 1 18110 18110 70.332 5.097 1 8764900 1531 1491 795 797 1801 1801 0.049091699261907706 AELEGLVRA 9 Unmodified _AELEGLVRA_ 0 0 0 NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant;nc|ENSG00000073969|P46459-2|NSF;ENSG00000073969|ENST00000398238|NSF NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.271824 956.529095 -0.2288 -0.00010966 0.27522 0.00013191 0.046425 2.225E-05 479.2719110669264 91.158 0.77089 91.158 90.758 91.529 0 0.2312 0.00018434 NaN 70.332 48 21 3 NaN NaN NaN NaN 0 NaN NaN 0 11400000 1532 1491 795 797 0.049091699261907706 AELEHLRQA 9 Unmodified _AELEHLRQA_ 0 0 0 ENSG00000157933|ENST00000378536|SKI ENSG00000157933|ENST00000378536|SKI ENSG00000157933|ENST00000378536|SKI MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2645874023438 2 533.78563 1065.55671 0.1314 7.0139E-05 -0.014747 -7.8716E-06 0.11665 6.2268E-05 533.7855792318387 32.009 0.59031 32.009 31.671 32.261 0 38 16 3 0 0 0 0.30018 1 5822 5822 43.982 5.8063 1 5403200 1533 5145 796 798 1802 1802 0.026550731864290356 AELEHLRQA 9 Unmodified _AELEHLRQA_ 0 0 0 ENSG00000157933|ENST00000378536|SKI ENSG00000157933|ENST00000378536|SKI ENSG00000157933|ENST00000378536|SKI MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2836303710938 2 533.78563 1065.55671 -0.049683 -2.652E-05 0.1891 0.00010094 0.13942 7.442E-05 533.7857143149097 34.335 0.49282 32.017 31.733 32.226 -2.3175 32 13 3 0 0 0 0.044345 1 6297 6297 80.676 14.219 1 5170300 1534 5145 796 798 1803 1803 0.026550731864290356 AELEHLRQA 9 Unmodified _AELEHLRQA_ 0 0 0 ENSG00000157933|ENST00000378536|SKI ENSG00000157933|ENST00000378536|SKI ENSG00000157933|ENST00000378536|SKI MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2669677734375 2 533.78563 1065.55671 0.55104 0.00029414 -0.40872 -0.00021817 0.14232 7.5968E-05 533.7853915380485 34.223 0.51518 32.076 31.809 32.324 -2.1468 40 14 4 0 0 0 0.092401 1 6004 6004 78.06 14.1 1 6274500 1535 5145 796 798 1804 1804 0.026550731864290356 AELEHLRQA 9 Unmodified _AELEHLRQA_ 0 0 0 ENSG00000157933|ENST00000378536|SKI ENSG00000157933|ENST00000378536|SKI ENSG00000157933|ENST00000378536|SKI MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.271484375 2 533.78563 1065.55671 0.42674 0.00022779 -0.32454 -0.00017323 0.1022 5.4552E-05 533.7854675800489 34.255 0.62595 32.039 31.777 32.403 -2.2158 41 17 4 0 0 0 0.068106 1 5976 5976 83.429 14.324 1 6048400 1536 5145 796 798 1805 1805 0.026550731864290356 AELEKADPPP 10 Unmodified _AELEKADPPP_ 0 0 0 REV__ENST00000600584.5_1_19:4095384-4099460:-|nuORF REV__ENST00000600584.5_1_19:4095384-4099460:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2688598632812 2 533.774396 1065.53424 0.56951 0.00030399 0.1418 7.5691E-05 0.71131 0.00037968 534.2761367869847 31.03 0.35211 28.956 28.779 29.131 -2.0743 16 9 2 0 0 0 0.8126 1 5347 5347 24.991 11.085 1 853610 + 1537 15873 797 799 1806 1806 0.004094289981367183 AELEKADPPP 10 Unmodified _AELEKADPPP_ 0 0 0 REV__ENST00000600584.5_1_19:4095384-4099460:-|nuORF REV__ENST00000600584.5_1_19:4095384-4099460:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.774396 1065.53424 0.1553 8.2895E-05 -0.11519 -6.1486E-05 0.040107 2.1408E-05 533.774257191286 28.959 0.38654 28.959 28.738 29.125 0 0.0016051 -8.1458E-05 NaN 24.991 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 882800 + 1538 15873 797 799 0.004094289981367183 AELEKGNI 8 Unmodified _AELEKGNI_ 0 0 0 ALOX12B|p.L451Sfs*16|1|0.1|ENSG00000179477|chr17:8076669-8076669|C/-|frameshift_variant;ALOX12B|p.L451Afs*27|2|0.33|ENSG00000179477|chr17:8076668-8076669|-/C|frameshift_variant;ENSG00000179477|ENST00000647874|ALOX12B ALOX12B|p.L451Sfs*16|1|0.1|ENSG00000179477|chr17:8076669-8076669|C/-|frameshift_variant ALOX12B|p.L451Sfs*16|1|0.1|ENSG00000179477|chr17:8076669-8076669|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21612548828125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 59.869 1 56.936 56.436 57.436 -2.9333 0 0 0 0.21486 1 11515 11515 12.532 0 1 1539 125 798 800 1807 1807 0.019015056264720442 AELEVLRQ 8 Unmodified _AELEVLRQ_ 0 0 0 ENSG00000111602|ENST00000553532|TIMELESS;nc|ENSG00000111602|Q9UNS1-2|TIMELESS ENSG00000111602|ENST00000553532|TIMELESS ENSG00000111602|ENST00000553532|TIMELESS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73193359375 2 479.271824 956.529095 -0.0026982 -1.2932E-06 0.089144 4.2724E-05 0.086446 4.1431E-05 479.2718533860614 94.787 0.76137 90.906 90.501 91.262 -3.881 54 21 3 0 0 0 0.55701 1 18130 18130 41.84 0 1 9151200 1540 2629 799 801 1808 1808 0.049091699261907706 AELFMEDT 8 Unmodified _AELFMEDT_ 0 0 0 REV__ENSG00000176658|ENST00000318217|MYO1D REV__ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.730712890625 2 478.207501 954.400449 -0.030107 -1.4397E-05 -1.6316 -0.00078023 -1.6617 -0.00079463 478.2066627484074 54.076 0.59293 50.938 50.645 51.238 -3.1377 26 16 2 0 0 0 8448 1 9998 9998 13.615 0 1 11736000 + 1541 18516 800 802 1809 1809 -0.07857553099074721 AELGGSPSFL 10 Unmodified _AELGGSPSFL_ 0 0 0 REV__ENST00000264057.6_1_2:234378928-234379132:+|nuORF REV__ENST00000264057.6_1_2:234378928-234379132:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2525634765625 2 489.250557 976.486562 0.1732 8.474E-05 -0.18774 -9.1852E-05 -0.014536 -7.1115E-06 489.2504265235229 112.55 0.82079 112.55 112.18 113 0 55 23 3 0 0 0 0.59928 1 22089 22089 19.257 0 1 4536400 + 1542 20227 801 803 1810 1810 -0.002622252020501037 AELGKLYSV 9 Unmodified _AELGKLYSV_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.276611328125 2 490.276575 978.538597 0.28126 0.00013789 -0.32841 -0.00016101 -0.047156 -2.3119E-05 490.276535909006 97.841 0.99919 97.841 97.296 98.295 0 64 28 4 0 0 0 0.011757 3 19196 19149;19196;19235 100.71 55.009 1 7275300 1543 2786;3317 802 804 1811;1812;1813 1812 0.04846938211710494 AELGKLYSV 9 Unmodified _AELGKLYSV_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.276611328125 2 490.276575 978.538597 0.1252 6.1383E-05 0.086137 4.2231E-05 0.21134 0.00010361 490.2766145340441 101.94 0.86053 97.758 97.304 98.165 -4.1861 67 24 3 0 0 0 0.002442 5 19981 19965;19981;20009;20029;20077 117.84 60.116 1 10815000 1544 2786;3317 802 804 1814;1815;1816;1817;1818 1815 0.04846938211710494 AELGKLYSV 9 Unmodified _AELGKLYSV_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25775146484375 2 490.276575 978.538597 0.42082 0.00020632 -0.23052 -0.00011302 0.1903 9.33E-05 490.27645459194423 101.95 1.0911 97.627 96.989 98.08 -4.3208 72 31 3 0 0 0 0.0070869 4 19559 19475;19524;19559;19571 110.79 57.63 1 12183000 1545 2786;3317 802 804 1819;1820;1821;1822 1821 0.04846938211710494 AELGKLYSV 9 Unmodified _AELGKLYSV_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000114374|ENST00000338981|USP9Y;USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.267333984375 2 490.276575 978.538597 0.21271 0.00010429 -0.19621 -9.6198E-05 0.016497 8.0883E-06 490.2765551139267 101.77 1.1508 97.75 96.999 98.15 -4.0212 72 32 3 0 0 0 0.011757 4 19525 19505;19525;19552;19601 100.71 55.009 1 12037000 1546 2786;3317 802 804 1823;1824;1825;1826 1824 0.04846938211710494 AELGPLWPP 9 Unmodified _AELGPLWPP_ 0 0 0 REV__ENST00000551731.1_1_22:51065210-51065465:-|nuORF REV__ENST00000551731.1_1_22:51065210-51065465:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26495361328125 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 53.762 1 53.762 53.262 54.262 0 0 0 0 0.19679 1 10244 10244 0.40827 0.15679 1 + 1547 14688 803 805 1827 1827 0.027349729028514957 AELGPLWPP 9 Unmodified _AELGPLWPP_ 0 0 0 REV__ENST00000551731.1_1_22:51065210-51065465:-|nuORF REV__ENST00000551731.1_1_22:51065210-51065465:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2647399902344 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 15.876 1 14.66 14.16 15.16 -1.2159 0 0 0 0.23508 1 2471 2471 8.5933 0 1 + 1548 14688 803 805 1828 1828 0.027349729028514957 AELGPLWPP 9 Unmodified _AELGPLWPP_ 0 0 0 REV__ENST00000551731.1_1_22:51065210-51065465:-|nuORF REV__ENST00000551731.1_1_22:51065210-51065465:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26416015625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 15.513 1 14.291 13.791 14.791 -1.2219 0 0 0 0.23508 1 2177 2177 8.5933 1.304 1 + 1549 14688 803 805 1829 1829 0.027349729028514957 AELGREEL 8 Unmodified _AELGREEL_ 0 0 0 ENST00000456404.5_1_20:30310076-30311747:-|nuORF ENST00000456404.5_1_20:30310076-30311747:-|nuORF ENST00000456404.5_1_20:30310076-30311747:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2444763183594 2 458.740357 915.46616 0.249 0.00011423 -0.046988 -2.1555E-05 0.20201 9.2671E-05 458.7402707738143 73.104 0.76978 73.104 72.715 73.485 0 62 21 4 0 0 0 0.58432 1 14158 14158 23.148 0 1 17522000 1550 10028 804 806 1830 1830 0.005046041381433497 AELGSEGGLQ 10 Unmodified _AELGSEGGLQ_ 0 0 0 ENST00000473745.5_1_7:128580841-128580907:+|nuORF ENST00000473745.5_1_7:128580841-128580907:+|nuORF ENST00000473745.5_1_7:128580841-128580907:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24444580078125 2 480.735271 959.45599 0.17141 8.2402E-05 0.35848 0.00017233 0.52988 0.00025473 480.7354197998158 35.603 0.62193 33.35 33.019 33.641 -2.2527 29 17 2 0 0 0 0.30531 1 6321 6321 8.7518 4.0931 1 1488200 1551 10243 805 807 1831 1831 -0.025360035870789943 AELGTFPRA 9 Unmodified _AELGTFPRA_ 0 0 0 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2522277832031 2 481.258717 960.50288 0.40193 0.00019343 -0.32118 -0.00015457 0.080749 3.8861E-05 481.2585086789287 80.094 0.51776 80.094 79.935 80.452 0 24 14 2 0 0 0 0.13904 1 15579 15579 45.74 13.434 1 3024700 1552 7045 806 808 1832 1832 0.02104900754704886 AELGTFPRA 9 Unmodified _AELGTFPRA_ 0 0 0 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23699951171875 2 481.258717 960.50288 0.016814 8.0919E-06 0.097695 4.7017E-05 0.11451 5.5108E-05 481.2586136307896 83.837 0.58347 80.229 79.977 80.56 -3.6079 34 16 3 0 0 0 0.080883 2 16409 16409;16431 61.602 29.296 1 2999200 1553 7045 806 808 1833;1834 1833 0.02104900754704886 AELGTFPRA 9 Unmodified _AELGTFPRA_ 0 0 0 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25335693359375 2 481.258717 960.50288 -0.11549 -5.5578E-05 0.53394 0.00025696 0.41845 0.00020138 481.25886973195924 83.891 0.60482 80.193 79.899 80.504 -3.6985 28 16 2 0 0 0 0.072372 2 15976 15976;16011 63.961 27.063 1 2066800 1554 7045 806 808 1835;1836 1835 0.02104900754704886 AELGTVLGF 9 Unmodified _AELGTVLGF_ 0 0 0 REV__ENSG00000162344|ENST00000294312|FGF19 REV__ENSG00000162344|ENST00000294312|FGF19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.76837158203125 2 453.750193 905.485833 0.24386 0.00011065 0.085354 3.8729E-05 0.32922 0.00014938 453.75012563084294 111.7 0.83435 111.7 111.24 112.08 0 49 23 3 0 0 0 0.48644 1 21888 21888 20.454 1.1966 1 5366200 + 1555 17488 807 809 1837 1837 0.029309801489034726 AELICLDP 8 Unmodified _AELICLDP_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2230529785156 2 437.222954 872.431355 NaN NaN NaN NaN NaN NaN NaN 68.786 1 65.395 64.895 65.895 -3.3903 0 0 0 0.21486 1 12995 12995 9.3474 0 1 1556 7795 808 810 1838 1838 -0.009963549941630845 AELIEHKRR 9 Unmodified _AELIEHKRR_ 0 0 0 REV__ENST00000492803.1_1_13:73372062-73409389:+|nuORF REV__ENST00000492803.1_1_13:73372062-73409389:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3358764648438 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 69.028 1 69.028 68.528 69.528 0 0 0 0 0.23508 1 13355 13355 7.2892 0 1 + 1557 14453 809 811 1839 1839 0.08778730240078403 AELIEHKRR 9 Unmodified _AELIEHKRR_ 0 0 0 REV__ENST00000492803.1_1_13:73372062-73409389:+|nuORF REV__ENST00000492803.1_1_13:73372062-73409389:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3347778320312 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 31.794 1 29.564 29.064 30.064 -2.2305 0 0 0 0.23508 1 5780 5780 6.7232 0.99131 1 + 1558 14453 809 811 1840 1840 0.08778730240078403 AELIGANAVQ 10 Unmodified _AELIGANAVQ_ 0 0 0 REV__ENST00000569830.1_1_15:42840055-42840904:-|nuORF REV__ENST00000569830.1_1_15:42840055-42840904:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 493.27227783203125 2 493.269281 984.52401 NaN NaN NaN NaN NaN NaN NaN 131.85 1 127.21 126.71 127.71 -4.6399 0 0 0 2.8426 1 25984 25984 1.9275 0 1 + 1559 23158 810 812 1841 1841 0.03112866063565889 AELIGKDFHG 10 Unmodified _AELIGKDFHG_ 0 0 0 REV__ENST00000496524.5_1_2:110920878-110921016:-|nuORF REV__ENST00000496524.5_1_2:110920878-110921016:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.782470703125 2 543.782556 1085.55056 0.28691 0.00015601 -0.17133 -9.3165E-05 0.11558 6.285E-05 543.78235821687 86.286 0.8774 86.286 85.859 86.737 0 57 24 4 0 0 0 0.44698 1 16817 16817 0.063865 0 1 6344800 + 1560 22390 811 813 1842 1842 0.011205549548776617 AELIHQIEA 9 Unmodified _AELIHQIEA_ 0 0 0 CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant;CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant;ENSG00000198707|ENST00000552810|CEP290 CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 512.7921752929688 2 512.277106 1022.53966 0.083298 4.2672E-05 0.23691 0.00012136 0.32021 0.00016403 512.2772182463495 87.093 0.56465 83.364 82.977 83.542 -3.7289 37 15 3 0 0 0 0.10782 1 16656 16656 36.127 13.391 1 2732400 1561 493 812 814 1843 1843 0.029291525806115715 AELIHQIEA 9 Unmodified _AELIHQIEA_ 0 0 0 CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant;CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant;ENSG00000198707|ENST00000552810|CEP290 CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 512.277106 1022.53966 0.37176 0.00019044 0.031286 1.6027E-05 0.40304 0.00020647 512.2772285639575 83.364 0.53428 83.364 83.044 83.578 0 0.071085 -0.0002939 NaN 36.127 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2020800 1562 493 812 814 0.029291525806115715 AELIHQIEA 9 Unmodified _AELIHQIEA_ 0 0 0 CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant;CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant;ENSG00000198707|ENST00000552810|CEP290 CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 512.277106 1022.53966 -0.19759 -0.00010122 0.41598 0.0002131 0.21839 0.00011188 512.2774500716686 86.921 0.52702 83.194 82.872 83.399 -3.727 -0.098868 0.00010024 NaN 36.127 28 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2888600 1563 493 812 814 0.029291525806115715 AELIHQIEA 9 Unmodified _AELIHQIEA_ 0 0 0 CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant;CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant;ENSG00000198707|ENST00000552810|CEP290 CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 512.277106 1022.53966 -0.18001 -9.2216E-05 0.55922 0.00028647 0.3792 0.00019426 512.277552678403 87.2 0.70238 83.249 82.824 83.526 -3.9503 -0.043361 0.00024699 NaN 36.127 40 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2486000 1564 493 812 814 0.029291525806115715 AELIKIRL 8 Unmodified _AELIKIRL_ 0 0 0 REV__CON__P08730-1 REV__CON__P08730-1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7419128417969 2 478.318577 954.622602 0.057305 2.741E-05 -2.8136 -0.0013458 -2.7563 -0.0013184 478.31696314611105 39.493 0.16994 39.493 39.372 39.542 0 6 4 2 0 0 0 0.98792 1 7332 7332 14.582 0 1 504650 + + 1565 13525 813 815 1844 1844 0.14347514099256387 AELIRAEQ 8 Unmodified _AELIRAEQ_ 0 0 0 ENST00000392622.3_1_1:153591296-153591350:-|nuORF ENST00000392622.3_1_1:153591296-153591350:-|nuORF ENST00000392622.3_1_1:153591296-153591350:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2569274902344 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 27.103 1 25.468 24.968 25.968 -1.6347 0 0 0 0.1328 1 4520 4520 39.957 0 1 1566 9378 814 816 1845 1845 0.030685968920806772 AELKAAEST 9 Unmodified _AELKAAEST_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23870849609375 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 62.32 1 59.081 58.581 59.581 -3.2395 0 0 0 0.23508 1 11682 11682 11.64 0 1 + 1567 19081 815 817 1846 1846 0.0033318441828669165 AELKAAEST 9 Unmodified _AELKAAEST_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2391662597656 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 74.353 1 70.759 70.259 71.259 -3.594 0 0 0 0.22251 1 14121 14121 16.942 1.0951 1 + 1568 19081 815 817 1847 1847 0.0033318441828669165 AELKAAEST 9 Unmodified _AELKAAEST_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2394104003906 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 74.799 1 71.205 70.705 71.705 -3.594 0 0 0 0.22251 1 14211 14211 16.942 1.0951 1 + 1569 19081 815 817 1848 1848 0.0033318441828669165 AELKEVDIF 9 Unmodified _AELKEVDIF_ 0 0 0 REV__nc|ENSG00000004139|Q6SZW1-2|SARM1 REV__nc|ENSG00000004139|Q6SZW1-2|SARM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2693481445312 2 532.28714 1062.55973 0.7679 0.00040874 0.0020393 1.0855E-06 0.76994 0.00040983 532.2871512629525 104.35 0.78016 100.3 99.839 100.62 -4.0543 50 21 3 0 0 0 0.35556 1 20079 20079 12.241 0 1 4826700 + 1570 13832 816 818 1849 1849 0.030949035205594555 AELKHTMEK 9 Unmodified _AELKHTMEK_ 0 0 0 REV__DENND6A|p.Q527H|1|0.34|ENSG00000174839|chr3:57630460-57630460|T/G|missense_variant REV__DENND6A|p.Q527H|1|0.34|ENSG00000174839|chr3:57630460-57630460|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7838134765625 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 19.675 1 18.35 17.85 18.85 -1.3251 0 0 0 0.23508 1 3012 3012 7.2892 0 1 + 1571 13666 817 819 1850 1850 0.0145748173724769 AELKKEYNA 9 Unmodified _AELKKEYNA_ 0 0 0 SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;SPAG9|p.R484Kfs*7|1|0.28|ENSG00000008294|chr17:51005237-51005238|-/T|frameshift_variant SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2721557617188 2 533.282389 1064.55022 0.46978 0.00025053 0.49058 0.00026162 0.96036 0.00051214 533.7845601421874 103.37 0.51361 103.37 103.07 103.58 0 34 14 3 0 0 0 0.32251 1 20297 20297 7.4771 4.8458 1 1966100 1572 1041 818 820 1851 1851 0.020531352350417365 AELKKEYNA 9 Unmodified _AELKKEYNA_ 0 0 0 SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;SPAG9|p.R484Kfs*7|1|0.28|ENSG00000008294|chr17:51005237-51005238|-/T|frameshift_variant SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2826538085938 2 533.282389 1064.55022 0.3246 0.0001731 1.1267 0.00060085 1.4513 0.00077396 533.2828251442953 107.6 0.71457 103.19 102.76 103.47 -4.4121 34 20 2 0 0 0 0.39189 1 20670 20670 26.268 6.9062 1 2395700 1573 1041 818 820 1852 1852 0.020531352350417365 AELKKEYNA 9 Unmodified _AELKKEYNA_ 0 0 0 SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;SPAG9|p.R484Kfs*7|1|0.28|ENSG00000008294|chr17:51005237-51005238|-/T|frameshift_variant SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2687377929688 2 533.282389 1064.55022 0.75738 0.0004039 1.3443 0.00071688 2.1017 0.0011208 533.2827773165963 107.28 0.71266 103.15 102.84 103.56 -4.135 34 20 3 0 0 0 0.2932 2 20624 20624;20695 22.736 5.794 1 2144800 1574 1041 818 820 1853;1854 1853 0.020531352350417365 AELKKKTIILS 11 Unmodified _AELKKKTIILS_ 0 0 0 REV__MYH13|p.N1729I|1|0.26|ENSG00000006788|chr17:10307048-10307048|T/A|missense_variant REV__MYH13|p.N1729I|1|0.26|ENSG00000006788|chr17:10307048-10307048|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.27166748046875 3 415.270984 1242.79112 NaN NaN NaN NaN NaN NaN NaN 30.049 1 27.975 27.475 28.475 -2.0743 0 0 0 0.23698 1 5129 5129 0.45452 0 1 + 1575 23895 819 821 1855 1855 0.1794395122228707 AELKKTIL 8 Unmodified _AELKKTIL_ 0 0 0 tr|U7SZW3|U7SZW3_FUSNUCarbamoylphosphatesynthasesmallchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carAPE=3SV=1 tr|U7SZW3|U7SZW3_FUSNUCarbamoylphosphatesynthasesmallchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carAPE=3SV=1 tr|U7SZW3|U7SZW3_FUSNUCarbamoylphosphatesynthasesmallchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22564697265625 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 77.831 1 74.064 73.564 74.564 -3.7664 0 0 0 0.22834 1 14749 14749 0.25148 0.12861 1 1576 26305 820 822 1856 1856 0.1193611897106166 AELKLRLK 8 Unmodified _AELKLRLK_ 0 0 0 nc|ENSG00000168502|Q9Y4B5-2|MTCL1;MTCL1|p.P1448Afs*83|1|0.4|ENSG00000168502|chr18:8824888-8824889|-/G|frameshift_variant;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;MTCL1|p.P1841Lfs*22|1|0.05|ENSG00000168502|chr18:8826071-8826071|C/-|frameshift_variant;MTCL1|p.L1858Wfs*5|1|0.26|ENSG00000168502|chr18:8826125-8826125|C/-|frameshift_variant;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;MTCL1|p.G1084Vfs*116|1|0.23|ENSG00000168502|chr18:8798144-8798144|G/-|frameshift_variant;MTCL1|p.W1259Efs*14|1|0.09|ENSG00000168502|chr18:8813191-8813192|-/GAGCC|frameshift_variant;MTCL1|p.G604Afs*38|1|0.5|ENSG00000168502|chr18:8783840-8783840|G/-|frameshift_variant;MTCL1|p.L694Cfs*5|1|0.37|ENSG00000168502|chr18:8784107-8784107|C/-|frameshift_variant nc|ENSG00000168502|Q9Y4B5-2|MTCL1 nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1973571777344 3 324.218443 969.633501 NaN NaN NaN NaN NaN NaN NaN 44.192 1 41.402 40.902 41.902 -2.79 0 0 0 0.22847 1 8299 8299 10.074 0 1 1577 5915 821 823 1857 1857 0.14746916473563942 AELKNIKQC 9 Unmodified _AELKNIKQC_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant;CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.695068359375 2 523.786784 1045.55902 0.88899 0.00046564 -1.0056 -0.00052673 -0.11664 -6.1096E-05 523.7864051340651 26.536 0.34085 24.754 24.586 24.926 -1.7821 14 9 2 0 0 0 0.64397 1 4690 4690 31.268 18.737 1 530840 1578 3001 822 824 1858 1858 0.03805785599865885 AELKPYITE 9 Unmodified _AELKPYITE_ 0 0 0 ENST00000442255.5_1_3:16313687-16345066:+|nuORF;ENSG00000154814|ENST00000285083|OXNAD1 ENST00000442255.5_1_3:16313687-16345066:+|nuORF ENST00000442255.5_1_3:16313687-16345066:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2702026367188 2 532.28714 1062.55973 -0.14335 -7.6303E-05 1.0751 0.00057228 0.93179 0.00049598 532.287704031902 104.58 0.75614 100.36 99.89 100.65 -4.2183 49 21 3 0 0 0 0.35556 1 20596 20596 12.241 0 1 5987500 1579 5026 823 825 1859 1859 0.03094903520536718 AELKQILH 8 Unmodified _AELKQILH_ 0 0 0 nc|ENSG00000185267|Q49AH0-2|CDNF;ENSG00000185267|ENST00000465530|CDNF nc|ENSG00000185267|Q49AH0-2|CDNF nc|ENSG00000185267|Q49AH0-2|CDNF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0397644042969 3 317.858915 950.554916 -0.22211 -7.0599E-05 0.062391 1.9832E-05 -0.15972 -5.0767E-05 317.85889341581077 43.709 0.69476 43.709 43.362 44.057 0 63 19 4 0 0 0 1.0243 1 8149 8149 7.2892 4.554 1 30163000 1580 6974 824 826 1860 1860 0.07766064168481535 AELKQILH 8 Unmodified _AELKQILH_ 0 0 0 nc|ENSG00000185267|Q49AH0-2|CDNF;ENSG00000185267|ENST00000465530|CDNF nc|ENSG00000185267|Q49AH0-2|CDNF nc|ENSG00000185267|Q49AH0-2|CDNF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 317.858915 950.554916 -0.30514 -9.6993E-05 0.048891 1.554E-05 -0.25625 -8.1452E-05 317.85890052449207 46.306 0.73177 43.465 43.102 43.834 -2.8409 -0.094332 -9.8907E-05 NaN 7.2892 64 20 4 NaN NaN NaN NaN 0 NaN NaN 0 34982000 1581 6974 824 826 0.07766064168481535 AELKQILH 8 Unmodified _AELKQILH_ 0 0 0 nc|ENSG00000185267|Q49AH0-2|CDNF;ENSG00000185267|ENST00000465530|CDNF nc|ENSG00000185267|Q49AH0-2|CDNF nc|ENSG00000185267|Q49AH0-2|CDNF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 317.858915 950.554916 -0.0059134 -1.8796E-06 -0.22801 -7.2475E-05 -0.23392 -7.4355E-05 317.85879353289255 46.384 0.76809 43.519 43.172 43.94 -2.8653 -0.040754 -0.00036295 NaN 7.2892 65 21 4 NaN NaN NaN NaN 0 NaN NaN 0 23716000 1582 6974 824 826 0.07766064168481535 AELKTGRTHQ 10 Unmodified _AELKTGRTHQ_ 0 0 0 tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1 tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1 tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2190246582031 3 380.875516 1139.60472 -0.56141 -0.00021383 0.86746 0.00033039 0.30605 0.00011657 380.8758637240379 15.627 0.27148 14.406 14.301 14.572 -1.2219 12 7 2 0 0 0 0.69696 1 2223 2223 7.0371 0.84524 1 3231600 1583 26244 825 827 1861 1861 0.04050147106477198 AELKTGRTHQ 10 Unmodified _AELKTGRTHQ_ 0 0 0 tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1 tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1 tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 380.875516 1139.60472 -0.24305 -9.2571E-05 0.48009 0.00018285 0.23704 9.0282E-05 380.87566854984874 14.651 0.31627 14.651 14.525 14.842 0 0.16237 -0.00032918 NaN 7.0371 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 6010100 1584 26244 825 827 0.04050147106477198 AELKTGRTHQ 10 Unmodified _AELKTGRTHQ_ 0 0 0 tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1 tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1 tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.875516 1139.60472 -0.76292 -0.00029058 1.0489 0.00039951 0.28602 0.00010894 380.87586620905944 15.624 0.27909 14.409 14.271 14.55 -1.2159 -0.07967 0.0003208 NaN 7.0371 19 7 4 NaN NaN NaN NaN 0 NaN NaN 0 4472000 1585 26244 825 827 0.04050147106477198 AELLAKQF 8 Unmodified _AELLAKQF_ 0 0 0 ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2297668457031 2 460.26601 918.517468 0.03796 1.7472E-05 0.41885 0.00019278 0.45681 0.00021025 460.26622138786985 91.408 0.37387 91.408 91.253 91.627 0 17 10 2 0 0 0 0.16192 1 17895 17895 50.855 20.63 1 822240 1586 1684 826 828 1862 1862 0.054949729028635375 AELLAKQF 8 Unmodified _AELLAKQF_ 0 0 0 ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24462890625 2 460.26601 918.517468 0.096789 4.4549E-05 0.62153 0.00028607 0.71832 0.00033062 460.26610420130567 95.342 0.58081 91.15 90.928 91.509 -4.1911 24 16 2 0 0 0 0.31517 1 18172 18172 36.044 17.909 1 762370 1587 1684 826 828 1863 1863 0.054949729028635375 AELLAKQF 8 Unmodified _AELLAKQF_ 0 0 0 ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.26601 918.517468 -0.049391 -2.2733E-05 0.20413 9.3955E-05 0.15474 7.1222E-05 460.2661502058119 95.298 0.44798 91.248 90.89 91.338 -4.0496 -0.020588 -0.00019804 NaN 50.855 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 667280 1588 1684 826 828 0.054949729028635375 AELLEFAE 8 Unmodified _AELLEFAE_ 0 0 0 nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3;ENST00000540057.1_1_11:73796630-73801976:-|nuORF nc|ENSG00000168014|Q4AC94-2|C2CD3 nc|ENSG00000168014|Q4AC94-2|C2CD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.23321533203125 2 461.231833 920.449113 NaN NaN NaN NaN NaN NaN NaN 54.415 1 51.277 50.777 51.777 -3.1377 0 0 0 0.22934 1 10070 10070 1.3295 0 1 1589 5868 827 829 1864 1864 -0.014293164676587367 AELLLLHGVE 10 Unmodified _AELLLLHGVE_ 0 0 0 CDKN2B|p.A70V|1|0.4|ENSG00000147883|chr9:22006195-22006195|G/A|missense_variant CDKN2B|p.A70V|1|0.4|ENSG00000147883|chr9:22006195-22006195|G/A|missense_variant CDKN2B|p.A70V|1|0.4|ENSG00000147883|chr9:22006195-22006195|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7669067382812 2 547.316232 1092.61791 -0.083807 -4.5869E-05 -2.4886 -0.001362 -2.5724 -0.0014079 547.3149382297192 111.63 0.34578 107.21 107 107.34 -4.4231 12 9 2 0 0 0 0.87854 1 22018 22018 5.7319 0 1 921280 1590 473 828 830 1865 1865 0.0753058516584133 AELLRREAPP 10 Unmodified _AELLRREAPP_ 0 0 0 nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12;ENST00000518375.1_1_8:105502903-105507508:-|nuORF nc|ENSG00000147650|Q9Y561-2|LRP12 nc|ENSG00000147650|Q9Y561-2|LRP12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3305053710938 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 27.067 1 25.285 24.785 25.785 -1.7821 0 0 0 0.22588 1 4797 4797 6.2058 1.4498 1 1591 4714 829 831 1866 1866 0.07655908145943613 AELLSTRPRL 10 Unmodified _AELLSTRPRL_ 0 0 0 REV__ENST00000408991.3_1_19:49621717-49621960:-|nuORF REV__ENST00000408991.3_1_19:49621717-49621960:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 385.90106201171875 3 385.899662 1154.67716 NaN NaN NaN NaN NaN NaN NaN 18.65 1 18.65 18.15 19.15 0 0 0 0 0.22588 1 3013 3013 1.9064 0 1 + 1592 21401 830 832 1867 1867 0.10600481180040333 AELNAQIITA 10 Unmodified _AELNAQIITA_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27392578125 2 522.290214 1042.56587 0.36935 0.00019291 -0.050049 -2.614E-05 0.31931 0.00016677 522.2901305793827 107.72 1.206 107.72 106.93 108.14 0 85 34 4 0 0 0 0.0075215 3 21168 21149;21168;21255 106.94 3.9084 1 13831000 1593 1252 831 833 1868;1869;1870 1869 0.04629421752088092 AELNAQIITA 10 Unmodified _AELNAQIITA_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2793579101562 2 522.290214 1042.56587 -0.46516 -0.00024295 0.57544 0.00030055 0.11028 5.7597E-05 522.2905709503507 112.16 1.3937 107.74 106.68 108.07 -4.4231 112 39 4 0 0 0 0.080529 1 22137 22137 67.838 18.284 1 8852800 1594 1252 831 833 1871 1871 0.04629421752088092 AELNAQIITA 10 Unmodified _AELNAQIITA_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2806396484375 2 522.290214 1042.56587 -0.73193 -0.00038228 0.84577 0.00044174 0.11384 5.9456E-05 522.2907341107245 112.32 1.2539 107.8 106.93 108.18 -4.5259 80 35 3 0 0 0 0.0075215 1 21581 21581 106.94 17.539 1 9148900 1595 1252 831 833 1872 1872 0.04629421752088092 AELNAQIITA 10 Unmodified _AELNAQIITA_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27978515625 2 522.290214 1042.56587 0.64923 0.00033908 -0.53483 -0.00027934 0.1144 5.9748E-05 522.2900438261307 112.03 1.3263 107.8 106.94 108.26 -4.2289 87 37 4 0 0 0 0.0028269 1 21538 21538 110.55 30.956 1 9294000 1596 1252 831 833 1873 1873 0.04629421752088092 AELNKHFG 8 Unmodified _AELNKHFG_ 0 0 0 ENST00000509702.5_1_4:23766811-23826805:-|nuORF;nc|ENSG00000109819|Q9UBK2-9|PPARGC1A;nc|ENSG00000109819|Q9UBK2-4|PPARGC1A;ENSG00000109819|ENST00000264867|PPARGC1A;nc|ENSG00000109819|Q9UBK2-3|PPARGC1A ENST00000509702.5_1_4:23766811-23826805:-|nuORF ENST00000509702.5_1_4:23766811-23826805:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23583984375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 50.405 1 47.36 46.86 47.86 -3.0453 0 0 0 0.21486 1 9235 9235 9.3474 0 1 1597 2545 832 834 1874 1874 0.0003634506618936939 AELNTTSL 8 Unmodified _AELNTTSL_ 0 0 0 REV__CHIA|p.N312Mfs*68|1|0.24|ENSG00000134216|chr1:111319135-111319135|A/-|frameshift_variant REV__CHIA|p.N312Mfs*68|1|0.24|ENSG00000134216|chr1:111319135-111319135|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2508850097656 2 424.721633 847.428712 0.25197 0.00010702 -0.27344 -0.00011614 -0.021473 -9.1202E-06 424.72142879203244 31.717 0.70575 29.691 29.302 30.008 -2.0264 45 19 3 0 0 0 8448 1 5475 5475 10.074 7.1913 1 6183000 + 1598 13406 833 835 1875 1875 -0.0011048712748333855 AELPLLYRA 9 Unmodified _AELPLLYRA_ 0 0 0 ENSG00000173825|ENST00000309880|TIGD3 ENSG00000173825|ENST00000309880|TIGD3 ENSG00000173825|ENST00000309880|TIGD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6801147460938 2 523.305667 1044.59678 -0.5199 -0.00027207 0.2985 0.0001562 -0.22141 -0.00011586 523.3057454939712 141.06 0.66714 136.07 135.75 136.41 -4.9877 22 18 2 0 0 0 0.77734 1 27142 27142 19.257 2.1441 1 2529600 1599 6313 834 836 1876 1876 0.0762661985700106 AELPSLRS 8 Unmodified _AELPSLRS_ 0 0 0 REV__ENST00000493059.1_1_19:42734948-42736858:-|nuORF REV__ENST00000493059.1_1_19:42734948-42736858:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2186279296875 2 436.745442 871.476331 -0.22932 -0.00010015 0.29922 0.00013068 0.069907 3.0532E-05 436.7454572719912 57.98 0.44721 55.069 54.825 55.272 -2.9105 16 12 2 0 0 0 0.97888 1 11110 11110 18.146 3.3081 1 554290 + 1600 15013 835 837 1877 1877 0.035452118633770624 AELPSLRS 8 Unmodified _AELPSLRS_ 0 0 0 REV__ENST00000493059.1_1_19:42734948-42736858:-|nuORF REV__ENST00000493059.1_1_19:42734948-42736858:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 436.745442 871.476331 0.039803 1.7384E-05 -0.55521 -0.00024248 -0.5154 -0.0002251 436.7452971537727 58.432 0.31391 55.18 54.96 55.274 -3.2517 0.055672 -0.00037276 NaN 18.146 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 315830 + 1601 15013 835 837 0.035452118633770624 AELPYLKIP 9 Unmodified _AELPYLKIP_ 0 0 0 ENST00000487755.1_1_1:155938929-155939834:-|nuORF ENST00000487755.1_1_1:155938929-155939834:-|nuORF ENST00000487755.1_1_1:155938929-155939834:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27880859375 2 522.310418 1042.60628 -0.74495 -0.00038909 0.80494 0.00042043 0.059988 3.1332E-05 522.3108276216738 43.701 0.57175 40.935 40.648 41.219 -2.7661 36 15 3 0 0 0 0.87974 1 7948 7948 4.3292 2.6766 1 6374100 1602 10473 836 838 1878 1878 0.08668388142518779 AELQAQEGLS 10 Unmodified _AELQAQEGLS_ 0 0 0 nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8 nc|ENSG00000125885|Q9UJA3-2|MCM8 nc|ENSG00000125885|Q9UJA3-2|MCM8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.684326171875 2 523.261653 1044.50875 0.42105 0.00022032 2.3895 0.0012503 2.8105 0.0014706 523.765009554328 49.495 0.38309 49.495 49.336 49.719 0 21 10 3 0 0 0 0.68509 1 9358 9358 32.786 0 1 935530 1603 3401 837 839 1879 1879 -0.011720455242766548 AELQEKNE 8 Unmodified _AELQEKNE_ 0 0 0 REV__SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant REV__SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2372131347656 2 480.735271 959.45599 -0.10202 -4.9047E-05 3.3883 0.0016289 3.2863 0.0015798 480.7355913182824 52.814 0.1755 49.718 49.62 49.795 -3.0954 6 4 2 0 0 0 8448 1 9755 9755 0.62683 0 1 295470 + 1604 14927 838 840 1880 1880 -0.02536003587090363 AELQGRLGI 9 Unmodified _AELQGRLGI_ 0 0 0 PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant;ENSG00000089159|ENST00000637617|PXN PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7239685058594 2 478.779816 955.545079 0.04514 2.1612E-05 -0.032277 -1.5454E-05 0.012863 6.1586E-06 478.7797368710293 95.136 0.45264 91.086 90.852 91.304 -4.0496 20 12 2 0 0 0 0.23744 1 18617 18617 36.127 3.8215 1 1627000 1605 1754 839 841 1881 1881 0.0655287616308442 AELQGRLGI 9 Unmodified _AELQGRLGI_ 0 0 0 PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant;ENSG00000089159|ENST00000637617|PXN PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72265625 2 478.779816 955.545079 0.14521 6.9524E-05 -0.20315 -9.7265E-05 -0.05794 -2.774E-05 478.77971760604953 95.346 0.55117 91.155 90.86 91.411 -4.1911 22 15 2 0 0 0 0.12542 1 18189 18189 65.235 11.659 1 1547700 1606 1754 839 841 1882 1882 0.0655287616308442 AELQKVRKA 9 Unmodified _AELQKVRKA_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2716674804688 2 521.822015 1041.62948 0.085764 4.4754E-05 -0.13812 -7.2073E-05 -0.052354 -2.7319E-05 521.821945824955 14.055 0.34729 14.055 13.931 14.279 0 25 9 4 0 0 0 0.03086 1 2082 2082 90.135 44.435 1 24821000 1607 2429 840 842 1883 1883 0.11032826979840138 AELQKVRKA 9 Unmodified _AELQKVRKA_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2738647460938 2 521.822015 1041.62948 -0.88325 -0.0004609 0.77119 0.00040243 -0.11205 -5.8472E-05 521.822444831928 14.948 0.31347 13.834 13.677 13.99 -1.1142 27 8 5 0 0 0 0.0048521 2 2262 2260;2262 114.19 68.487 1 22829000 1608 2429 840 842 1884;1885 1885 0.11032826979840138 AELQKVRKA 9 Unmodified _AELQKVRKA_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2816162109375 2 521.822015 1041.62948 -0.59128 -0.00030854 0.35641 0.00018598 -0.23486 -0.00012256 521.8223803313837 16.669 0.2473 15.453 15.32 15.567 -1.2159 9 6 2 0 0 0 0.87258 1 2650 2650 0.45834 0 1 266420 1609 2429 840 842 1886 1886 0.11032826979840138 AELQKVRKA 9 Unmodified _AELQKVRKA_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.273681640625 2 521.822015 1041.62948 -1.3202 -0.00068892 1.1981 0.0006252 -0.12211 -6.3722E-05 521.8226507425527 14.992 0.41638 13.77 13.615 14.032 -1.2219 28 11 4 0 0 0 0.11282 1 2053 2053 51.415 26.016 1 17155000 1610 2429 840 842 1887 1887 0.11032826979840138 AELQKVRKA 9 Unmodified _AELQKVRKA_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.822015 1041.62948 -1.3596 -0.00070948 1.8007 0.00093962 0.44103 0.00023014 521.8228382673377 16.765 0.13363 15.412 15.338 15.472 -1.3534 -0.020683 0.0003095 NaN 0.45834 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 229600 1611 2429 840 842 0.11032826979840138 AELQLPPPP 9 Unmodified _AELQLPPPP_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2;ENST00000531041.1_1_11:65819855-65820217:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25347900390625 2 481.271293 960.528032 -0.023231 -1.118E-05 0.45634 0.00021962 0.4331 0.00020844 481.2715188368236 47.536 0.48354 44.667 44.426 44.91 -2.869 17 13 2 0 0 0 0.54354 1 8946 8946 16.942 0 1 792280 1612 1718 841 843 1888 1888 0.04618955557270965 AELQLPPPP 9 Unmodified _AELQLPPPP_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2;ENST00000531041.1_1_11:65819855-65820217:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2370910644531 2 481.271293 960.528032 NaN NaN NaN NaN NaN NaN NaN 43.487 1 40.739 40.239 41.239 -2.7475 0 0 0 0.21848 1 7851 7851 18.135 0 1 1613 1718 841 843 1889 1889 0.04618955557270965 AELQLRAA 8 Unmodified _AELQLRAA_ 0 0 0 ENSG00000111817|ENST00000644252|DSE;ENST00000436315.2_1_9:71224173-71224329:+|nuORF;ENST00000607094.1_1_6:116600797-116720830:+|nuORF ENSG00000111817|ENST00000644252|DSE ENSG00000111817|ENST00000644252|DSE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2178039550781 2 436.253434 870.492316 -0.31513 -0.00013748 0.44588 0.00019452 0.13075 5.7042E-05 436.2535898896233 52.016 0.75526 49.134 48.732 49.487 -2.8824 52 21 4 0 0 0 0.71273 1 9872 9872 12.532 0.89125 1 9472300 1614 2650 842 844 1890 1890 0.05188918100270712 AELQRLKA 8 Unmodified _AELQRLKA_ 0 0 0 nc|ENSG00000204614|Q6P9F5-2|TRIM40;ENSG00000204614|ENST00000396581|TRIM40 REV__ENST00000596279.1_1_19:17337742-17339154:+|nuORF REV__ENST00000596279.1_1_19:17337742-17339154:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2525939941406 2 464.782359 927.550165 0.046781 2.1743E-05 1.98 0.00092027 2.0268 0.00094201 464.7833200464701 25.57 0.31009 23.936 23.752 24.062 -1.6347 11 8 2 0 0 0 0.9383 1 4193 4193 25.399 0 1 1297200 1615 7596 843 845 1891 1891 0.08349180025709302 AELQTRMEA 9 Oxidation (M) _AELQTRM(Oxidation (M))EA_ AELQTRM(1)EA AELQTRM(57)EA 0 0 1 ENST00000374723.5_1_9:108007154-108061535:+|nuORF ENST00000374723.5_1_9:108007154-108061535:+|nuORF ENST00000374723.5_1_9:108007154-108061535:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2689208984375 2 532.755681 1063.49681 0.45711 0.00024353 0.13935 7.4241E-05 0.59647 0.00031777 532.7556844261071 21.007 0.31525 19.533 19.35 19.665 -1.4742 16 8 2 0 0 0 0.095704 1 3527 3527 57.249 13.477 1 1158700 1616 9226 844 846 1892 1892 111 -0.032399855391076926 AELQTRMEA 9 Oxidation (M) _AELQTRM(Oxidation (M))EA_ 0 0 1 ENST00000374723.5_1_9:108007154-108061535:+|nuORF ENST00000374723.5_1_9:108007154-108061535:+|nuORF ENST00000374723.5_1_9:108007154-108061535:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.755681 1063.49681 0.052696 2.8074E-05 0.77669 0.00041379 0.82939 0.00044186 532.7561192547183 19.548 0.41394 19.548 19.344 19.758 0 0.027117 0.00019555 NaN 57.249 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 836280 1617 9226 844 846 111 -0.032399855391076926 AELQTRMEA 9 Oxidation (M) _AELQTRM(Oxidation (M))EA_ 0 0 1 ENST00000374723.5_1_9:108007154-108061535:+|nuORF ENST00000374723.5_1_9:108007154-108061535:+|nuORF ENST00000374723.5_1_9:108007154-108061535:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.755681 1063.49681 -0.70245 -0.00037424 1.1296 0.00060179 0.42712 0.00022755 532.7562241571776 21.2 0.31151 19.479 19.287 19.598 -1.7211 -0.042191 0.00057154 NaN 57.249 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 779990 1618 9226 844 846 111 -0.032399855391076926 AELRKELSP 9 Unmodified _AELRKELSP_ 0 0 0 REV__CTNNA3|p.E354Kfs*6|2|0.31|ENSG00000183230|chr10:66775513-66775513|T/-|frameshift_variant REV__CTNNA3|p.E354Kfs*6|2|0.31|ENSG00000183230|chr10:66775513-66775513|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2796630859375 2 521.798206 1041.58186 -0.30408 -0.00015867 0.76822 0.00040085 0.46413 0.00024218 521.798473606579 114.17 1.1974 109.7 109.09 110.29 -4.4726 67 33 4 0 0 0 0.50308 1 22496 22496 38.176 2.0485 1 3149600 + 1619 13603 845 847 1893 1893 0.06273127989015848 AELRKIHRA 9 Unmodified _AELRKIHRA_ 0 0 0 ENST00000435620.6_1_3:197803775-197807401:-|nuORF ENST00000435620.6_1_3:197803775-197807401:-|nuORF ENST00000435620.6_1_3:197803775-197807401:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.2656555175781 3 365.22448 1092.65161 -0.3426 -0.00012512 0.35646 0.00013019 0.013858 5.0613E-06 365.2245711815914 13.532 0.34434 13.532 13.411 13.755 0 23 9 4 0 0 0 0.048054 1 1958 1958 118.07 93.187 1 9532200 1620 9829 846 848 1894 1894 0.10899051448268438 AELRKIHRA 9 Unmodified _AELRKIHRA_ 0 0 0 ENST00000435620.6_1_3:197803775-197807401:-|nuORF ENST00000435620.6_1_3:197803775-197807401:-|nuORF ENST00000435620.6_1_3:197803775-197807401:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 365.22448 1092.65161 -0.90679 -0.00033118 1.0511 0.00038388 0.14428 5.2694E-05 365.22481060297855 14.36 0.20882 13.246 13.123 13.331 -1.1142 -0.077513 0.00035756 NaN 118.07 16 5 4 NaN NaN NaN NaN 0 NaN NaN 0 3823400 1621 9829 846 848 0.10899051448268438 AELRKIHRA 9 Unmodified _AELRKIHRA_ 0 0 0 ENST00000435620.6_1_3:197803775-197807401:-|nuORF ENST00000435620.6_1_3:197803775-197807401:-|nuORF ENST00000435620.6_1_3:197803775-197807401:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 365.22448 1092.65161 -0.63941 -0.00023353 0.78761 0.00028766 0.14821 5.4128E-05 365.2247342903941 14.365 0.24388 13.192 13.107 13.351 -1.173 -0.13148 6.8897E-05 NaN 118.07 18 6 4 NaN NaN NaN NaN 0 NaN NaN 0 3430400 1622 9829 846 848 0.10899051448268438 AELRPALG 8 Unmodified _AELRPALG_ 0 0 0 ENST00000295757.7_1_3:13521767-13522876:+|nuORF ENST00000295757.7_1_3:13521767-13522876:+|nuORF ENST00000295757.7_1_3:13521767-13522876:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 413.19244384765625 2 413.742702 825.470852 0.05749 2.3786E-05 -0.26714 -0.00011053 -0.20965 -8.6743E-05 413.74251214832253 31.775 0.44794 31.775 31.53 31.978 0 19 12 2 0 0 0 0.88445 1 5741 5741 0.62683 0 1 895310 1623 8495 847 849 1895 1895 0.05113533071562415 AELRPDSPA 9 Unmodified _AELRPDSPA_ 0 0 0 ENSG00000158050|ENST00000288943|DUSP2 ENSG00000158050|ENST00000288943|DUSP2 ENSG00000158050|ENST00000288943|DUSP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72442626953125 2 478.245806 954.47706 -0.042581 -2.0364E-05 0.65758 0.00031449 0.615 0.00029412 478.2457740016478 29.569 0.3179 29.569 29.363 29.681 0 11 8 2 0 0 0 0.65397 1 5289 5289 32.037 10.291 1 395390 1624 5149 848 850 1896 1896 -0.0019999348756982727 AELRPDSPA 9 Unmodified _AELRPDSPA_ 0 0 0 ENSG00000158050|ENST00000288943|DUSP2 ENSG00000158050|ENST00000288943|DUSP2 ENSG00000158050|ENST00000288943|DUSP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.245806 954.47706 0.48879 0.00023376 0.050023 2.3923E-05 0.53882 0.00025769 478.24581306264514 31.749 0.17513 29.601 29.479 29.654 -2.1483 0.015966 -0.00038332 NaN 43.982 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 332710 1625 5149 848 850 -0.0019999348756982727 AELSDGPPPP 10 Unmodified _AELSDGPPPP_ 0 0 0 ENST00000607047.1_1_8:38240229-38240670:+|nuORF ENST00000607047.1_1_8:38240229-38240670:+|nuORF ENST00000607047.1_1_8:38240229-38240670:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26800537109375 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 31.755 1 29.524 29.024 30.024 -2.2305 0 0 0 0.22569 1 5772 5772 15.847 1.9411 1 1626 11752 849 851 1897 1897 -0.024268155817139814 AELSELHSA 9 Unmodified _AELSELHSA_ 0 0 0 nc|ENSG00000171444|P23508|MCC nc|ENSG00000171444|P23508|MCC nc|ENSG00000171444|P23508|MCC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7378234863281 2 478.737814 955.461075 0.29555 0.00014149 -0.060789 -2.9102E-05 0.23476 0.00011239 478.7377318077061 47.328 0.98326 47.328 46.91 47.894 0 57 27 3 0 0 0 0.006766 3 8900 8858;8900;8951 111.29 42.391 1 22077000 1627 12461 850 852 1898;1899;1900 1899 -0.018436997244634767 AELSELHSA 9 Unmodified _AELSELHSA_ 0 0 0 nc|ENSG00000171444|P23508|MCC nc|ENSG00000171444|P23508|MCC nc|ENSG00000171444|P23508|MCC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7379455566406 2 478.737814 955.461075 -0.11962 -5.7268E-05 0.36536 0.00017491 0.24574 0.00011765 478.73797092140654 50.119 0.81037 47.238 46.798 47.609 -2.8811 42 22 2 0 0 0 0.010349 2 9508 9458;9508 103.75 42.391 1 21386000 1628 12461 850 852 1901;1902 1902 -0.018436997244634767 AELSELHSA 9 Unmodified _AELSELHSA_ 0 0 0 nc|ENSG00000171444|P23508|MCC nc|ENSG00000171444|P23508|MCC nc|ENSG00000171444|P23508|MCC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7379455566406 2 478.737814 955.461075 0.03381 1.6186E-05 0.26313 0.00012597 0.29694 0.00014216 478.73790531186023 50.276 0.80934 47.23 46.822 47.631 -3.0453 45 23 2 0 0 0 0.006766 3 9201 9152;9201;9250 111.29 49.93 1 26190000 1629 12461 850 852 1903;1904;1905 1904 -0.018436997244634767 AELSELHSA 9 Unmodified _AELSELHSA_ 0 0 0 nc|ENSG00000171444|P23508|MCC nc|ENSG00000171444|P23508|MCC nc|ENSG00000171444|P23508|MCC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73785400390625 2 478.737814 955.461075 -0.073254 -3.5069E-05 0.3603 0.00017249 0.28705 0.00013742 478.73793313650765 50.233 1.1586 47.226 46.774 47.933 -3.0068 57 33 2 0 0 0 0.0038583 2 9210 9210;9261 115.69 44.558 1 26733000 1630 12461 850 852 1906;1907 1906 -0.018436997244634767 AELSFALR 8 Unmodified _AELSFALR_ 0 0 0 nc|ENSG00000101400|Q13424-2|SNTA1;ENSG00000101400|ENST00000217381|SNTA1 nc|ENSG00000101400|Q13424-2|SNTA1 nc|ENSG00000101400|Q13424-2|SNTA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7672424316406 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 74.732 1 74.732 74.232 75.232 0 0 0 0 0.21486 1 14511 14511 10.824 2.2306 1 1631 2063 851 853 1908 1908 0.040538022430382625 AELSFALR 8 Unmodified _AELSFALR_ 0 0 0 nc|ENSG00000101400|Q13424-2|SNTA1;ENSG00000101400|ENST00000217381|SNTA1 nc|ENSG00000101400|Q13424-2|SNTA1 nc|ENSG00000101400|Q13424-2|SNTA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7557678222656 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 74.997 1 74.997 74.497 75.497 0 0 0 0 0.21171 1 14563 14563 15.847 3.3156 1 1632 2063 851 853 1909 1909 0.040538022430382625 AELSFALR 8 Unmodified _AELSFALR_ 0 0 0 nc|ENSG00000101400|Q13424-2|SNTA1;ENSG00000101400|ENST00000217381|SNTA1 nc|ENSG00000101400|Q13424-2|SNTA1 nc|ENSG00000101400|Q13424-2|SNTA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7557067871094 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 78.505 1 74.846 74.346 75.346 -3.6588 0 0 0 0.21486 1 14955 14955 12.532 3.1841 1 1633 2063 851 853 1910 1910 0.040538022430382625 AELSLDPGI 9 Unmodified _AELSLDPGI_ 0 0 0 ENST00000537485.5_1_16:29908438-29910395:-|nuORF ENST00000537485.5_1_16:29908438-29910395:-|nuORF ENST00000537485.5_1_16:29908438-29910395:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22906494140625 2 457.745108 913.475663 0.11144 5.101E-05 0.1289 5.9002E-05 0.24034 0.00011001 457.7450992069584 118.16 1.1132 113.66 112.89 114.01 -4.502 54 31 2 0 0 0 0.10537 1 23281 23281 14.957 6.0442 1 2864000 1634 11037 852 854 1911 1911 0.015463724236610688 AELSQPLTA 9 Unmodified _AELSQPLTA_ 0 0 0 ENSG00000117222|ENST00000264515|RBBP5;RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant ENSG00000117222|ENST00000264515|RBBP5 ENSG00000117222|ENST00000264515|RBBP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2506408691406 2 465.250557 928.486562 0.14592 6.7889E-05 0.16043 7.4641E-05 0.30635 0.00014253 465.2505513393172 73.346 0.95748 73.346 72.886 73.843 0 62 26 4 0 0 0 0.012534 3 14256 14207;14256;14304 99.755 26.787 1 9363400 1635 2979 853 855 1912;1913;1914 1913 0.019457747979458873 AELSQPLTA 9 Unmodified _AELSQPLTA_ 0 0 0 ENSG00000117222|ENST00000264515|RBBP5;RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant ENSG00000117222|ENST00000264515|RBBP5 ENSG00000117222|ENST00000264515|RBBP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 930.49755859375 1 929.493838 928.486562 0.55011 0.00051133 -0.22516 -0.00020929 0.32495 0.00030204 929.4934154491546 73.33 0.6735 73.33 72.989 73.663 0 28 18 2 0 0 0 0.19171 1 14262 14262 38.176 3.7738 1 4324900 1636 2979 853 855 1915 1915 0.019457747979458873 AELSQPLTA 9 Unmodified _AELSQPLTA_ 0 0 0 ENSG00000117222|ENST00000264515|RBBP5;RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant ENSG00000117222|ENST00000264515|RBBP5 ENSG00000117222|ENST00000264515|RBBP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.4981689453125 1 929.493838 928.486562 0.12466 0.00011587 0.22175 0.00020611 0.3464 0.00032198 929.4938198797588 76.787 0.65604 73.371 73.075 73.732 -3.4151 29 18 2 0 0 0 0.10083 1 15002 15002 55.503 13.663 1 6185400 1637 2979 853 855 1916 1916 0.019457747979458873 AELSQPLTA 9 Unmodified _AELSQPLTA_ 0 0 0 ENSG00000117222|ENST00000264515|RBBP5;RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant ENSG00000117222|ENST00000264515|RBBP5 ENSG00000117222|ENST00000264515|RBBP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2505798339844 2 465.250557 928.486562 -0.085473 -3.9766E-05 0.27556 0.0001282 0.19009 8.8438E-05 465.25063824414684 76.823 1.0821 73.408 72.936 74.018 -3.4151 67 30 3 0 0 0 0.02633 1 15019 15019 85.642 12.674 1 13965000 1638 2979 853 855 1917 1917 0.019457747979458873 AELSQPLTA 9 Unmodified _AELSQPLTA_ 0 0 0 ENSG00000117222|ENST00000264515|RBBP5;RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant ENSG00000117222|ENST00000264515|RBBP5 ENSG00000117222|ENST00000264515|RBBP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2507019042969 2 465.250557 928.486562 0.0044622 2.076E-06 0.13384 6.2268E-05 0.1383 6.4344E-05 465.25056796700335 77.285 0.91376 73.518 73.087 74.001 -3.7664 59 25 3 0 0 0 0.022938 3 14626 14626;14674;14724 89.401 16.433 1 11725000 1639 2979 853 855 1918;1919;1920 1918 0.019457747979458873 AELSQPLTA 9 Unmodified _AELSQPLTA_ 0 0 0 ENSG00000117222|ENST00000264515|RBBP5;RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant ENSG00000117222|ENST00000264515|RBBP5 ENSG00000117222|ENST00000264515|RBBP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 930.47802734375 1 929.493838 928.486562 0.27795 0.00025835 0.011007 1.0231E-05 0.28896 0.00026858 929.4937425511542 77.31 0.66719 73.544 73.193 73.86 -3.7664 28 18 2 0 0 0 0.10573 1 14627 14627 53.833 6.0841 1 4690600 1640 2979 853 855 1921 1921 0.019457747979458873 AELSQPLTA 9 Unmodified _AELSQPLTA_ 0 0 0 ENSG00000117222|ENST00000264515|RBBP5;RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant ENSG00000117222|ENST00000264515|RBBP5 ENSG00000117222|ENST00000264515|RBBP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 930.4960327148438 1 929.493838 928.486562 0.25045 0.00023279 0.24991 0.00023229 0.50036 0.00046508 929.4939288268063 77.171 0.58949 73.512 73.191 73.78 -3.6588 30 16 2 0 0 0 0.13932 1 14662 14662 45.7 9.5726 1 5008200 1641 2979 853 855 1922 1922 0.019457747979458873 AELSQPLTA 9 Unmodified _AELSQPLTA_ 0 0 0 ENSG00000117222|ENST00000264515|RBBP5;RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant ENSG00000117222|ENST00000264515|RBBP5 ENSG00000117222|ENST00000264515|RBBP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25067138671875 2 465.250557 928.486562 0.11306 5.26E-05 0.045086 2.0976E-05 0.15814 7.3577E-05 465.2505258440218 77.096 1.0193 73.437 73.039 74.058 -3.6588 62 28 3 0 0 0 0.04795 2 14667 14667;14715 71.922 11.848 1 10764000 1642 2979 853 855 1923;1924 1923 0.019457747979458873 AELSSPVQS 9 Unmodified _AELSSPVQS_ 0 0 0 REV__ENST00000484924.5_1_22:29924318-29925178:-|nuORF REV__ENST00000484924.5_1_22:29924318-29925178:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 919.4628295898438 1 917.457453 916.450176 0.1029 9.4402E-05 -0.15959 -0.00014642 -0.056693 -5.2013E-05 917.457182653253 54.076 0.90789 50.938 50.645 51.553 -3.1377 62 25 3 0 0 0 0.31714 1 10021 10021 30.637 1.555 1 39173000 + 1643 22212 854 856 1925 1925 -0.011391020987502998 AELSTSFSV 9 Unmodified _AELSTSFSV_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.158447265625 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 104.6 1 104.6 104.1 105.1 0 0 0 0 0.23508 1 20556 20556 1.0715 0 1 + 1644 13904 855 857 1926 1926 -0.01722217955978067 AELSTSFSV 9 Unmodified _AELSTSFSV_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1598815917969 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 105.38 1 105.38 104.88 105.88 0 0 0 0 0.23508 1 20713 20713 1.0715 0 1 + 1645 13904 855 857 1927 1927 -0.01722217955978067 AELSTSFSV 9 Unmodified _AELSTSFSV_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.1597595214844 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 87.484 1 83.757 83.257 84.257 -3.727 0 0 0 0.23508 1 17108 17108 4.5289 0 1 + 1646 13904 855 857 1928 1928 -0.01722217955978067 AELSTSFSV 9 Unmodified _AELSTSFSV_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.176513671875 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 105.96 1 101.7 101.2 102.2 -4.2638 0 0 0 0.23508 1 20860 20860 7.609 0 1 + 1647 13904 855 857 1929 1929 -0.01722217955978067 AELSTSFSV 9 Unmodified _AELSTSFSV_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.13946533203125 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 107.77 1 103.64 103.14 104.14 -4.135 0 0 0 0.23508 1 20732 20732 2.4985 0 1 + 1648 13904 855 857 1930 1930 -0.01722217955978067 AELSVMKSL 9 Unmodified _AELSVMKSL_ 0 0 0 REV__ENST00000496968.5_1_7:143997625-144008999:-|nuORF REV__ENST00000496968.5_1_7:143997625-144008999:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2765197753906 2 489.270435 976.526318 -0.29877 -0.00014618 2.9599 0.0014482 2.6611 0.001302 489.270900111517 52.738 0.63163 49.643 49.164 49.795 -3.0954 34 17 4 0 0 0 0.54354 1 9728 9728 16.942 0 1 999030 + 1649 21992 856 858 1931 1931 0.037115784770321625 AELSWPHRPES 11 Unmodified _AELSWPHRPES_ 0 0 0 ENST00000554936.1_1_14:24791773-24792709:-|nuORF ENST00000554936.1_1_14:24791773-24792709:-|nuORF ENST00000554936.1_1_14:24791773-24792709:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2167053222656 3 436.882559 1307.62585 -0.14318 -6.2554E-05 -3.3677 -0.0014713 -3.5109 -0.0015338 437.2165308152197 97.595 0.21298 93.675 93.608 93.821 -3.9194 7 5 2 0 0 0 0.79428 1 18751 18751 4.4062 1.7749 1 669280 1650 11227 857 859 1932 1932 -0.015658875846838782 AELTKHRRIH 10 Unmodified _AELTKHRRIH_ 0 0 0 ENST00000483450.1_1_6:28962780-28967471:-|nuORF;ENSG00000197935|ENST00000377179|ZNF311 ENST00000483450.1_1_6:28962780-28967471:-|nuORF ENST00000483450.1_1_6:28962780-28967471:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7512817382812 2 630.86782 1259.72109 NaN NaN NaN NaN NaN NaN NaN 104.79 1 100.74 100.24 101.24 -4.0543 0 0 0 0.22588 1 20155 20155 3.5965 0.60125 1 1651 7412 858 860 1933 1933 0.10161510397028906 AELVENERK 9 Unmodified _AELVENERK_ 0 0 0 REV__ENSG00000115306|ENST00000356805|SPTBN1 REV__ENSG00000115306|ENST00000356805|SPTBN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7822875976562 2 544.290745 1086.56694 0.36976 0.00020126 -0.26285 -0.00014307 0.10691 5.8189E-05 544.7917614750314 29.648 0.31055 27.756 27.617 27.928 -1.8928 9 8 2 0 0 0 0.80264 1 5037 5037 12.241 0 1 370340 + 1652 15420 859 861 1934 1934 0.027116361209891693 AELVSANVI 9 Unmodified _AELVSANVI_ 0 0 0 REV__nc|ENSG00000288602|Q96BR1-2|SGK3 REV__nc|ENSG00000288602|Q96BR1-2|SGK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24127197265625 2 458.260925 914.507297 0.1251 5.7326E-05 0.052526 2.4071E-05 0.17762 8.1397E-05 458.26089685215385 74.517 0.83511 70.84 70.482 71.318 -3.6764 50 23 3 0 0 0 0.31714 1 14036 14036 30.637 0.41173 1 6051800 + 1653 14909 860 862 1935 1935 0.04662365177614447 AELVSANVI 9 Unmodified _AELVSANVI_ 0 0 0 REV__nc|ENSG00000288602|Q96BR1-2|SGK3 REV__nc|ENSG00000288602|Q96BR1-2|SGK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23828125 2 458.260925 914.507297 0.34034 0.00015597 -0.14964 -6.8572E-05 0.19071 8.7395E-05 458.2608144169379 74.502 0.80118 70.908 70.537 71.338 -3.594 48 22 3 0 0 0 0.049627 1 14202 14202 71.134 6.8973 1 5553100 + 1654 14909 860 862 1936 1936 0.04662365177614447 AELVSDLAP 9 Unmodified _AELVSDLAP_ 0 0 0 REV__nc|ENSG00000168071|A6NC98-3|CCDC88B REV__nc|ENSG00000168071|A6NC98-3|CCDC88B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2395935058594 2 457.745108 913.475663 0.6673 0.00030545 -0.42177 -0.00019306 0.24553 0.00011239 457.7448198443969 102.53 1.079 102.53 101.89 102.97 0 64 30 3 0 0 0 0.16442 1 20178 20178 42.095 6.0504 1 11791000 + 1655 22366 861 863 1937 1937 0.015463724236724374 AELWDQCRDP 10 Unmodified _AELWDQCRDP_ 0 0 0 REV__ENSG00000103319|ENST00000263026|EEF2K REV__ENSG00000103319|ENST00000263026|EEF2K MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.1142578125 3 411.517 1231.52917 0.13516 5.5623E-05 -0.51354 -0.00021133 -0.37838 -0.00015571 411.5168321550547 30.276 0.70351 28.201 27.901 28.605 -2.0743 52 19 4 0 0 0 0.91149 1 5231 5231 1.7423 0.78 1 4999400 + 1656 14874 862 864 1938 1938 -0.07733198136111241 AELWGHGVS 9 Unmodified _AELWGHGVS_ 0 0 0 ENST00000471202.5_1_16:838684-840117:+|nuORF;ENST00000479976.5_1_16:838624-840569:+|nuORF;ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18;CHTF18|p.L139I|1|0.39|ENSG00000127586|chr16:789338-789338|C/A|missense_variant ENST00000471202.5_1_16:838684-840117:+|nuORF ENST00000471202.5_1_16:838684-840117:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7369384765625 2 478.235242 954.45593 -0.31833 -0.00015224 0.60677 0.00029018 0.28844 0.00013794 478.23549272885134 93.619 0.53788 93.619 93.292 93.829 0 20 14 2 0 0 0 0.30056 1 18319 18319 2.8827 2.2013 1 1155800 1657 3486 863 865 1939 1939 -0.02311958796417457 AELWGVLQ 8 Unmodified _AELWGVLQ_ 0 0 0 nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2 nc|ENSG00000166016|Q8N961-2|ABTB2 nc|ENSG00000166016|Q8N961-2|ABTB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23541259765625 2 458.25036 914.486168 NaN NaN NaN NaN NaN NaN NaN 131.73 1 127.09 126.59 127.59 -4.6399 0 0 0 0.23025 1 25960 25960 0.68139 0.27313 1 1658 5682 864 866 1940 1940 0.025503998687554486 AELWPPPP 8 Unmodified _AELWPPPP_ 0 0 0 ENST00000548477.5_1_12:113758134-113758563:-|nuORF ENST00000548477.5_1_12:113758134-113758563:-|nuORF ENST00000548477.5_1_12:113758134-113758563:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7669372558594 2 453.739628 905.464704 NaN NaN NaN NaN NaN NaN NaN 73.016 1 69.705 69.205 70.205 -3.3107 0 0 0 0.20568 1 14232 14232 20.871 1.4322 1 1659 11151 865 867 1941 1941 0.008190148400444741 AELWRRLFDPH 11 Unmodified _AELWRRLFDPH_ 0 0 0 REV__ENST00000219070.8_1_16:55513101-55513161:+|nuORF REV__ENST00000219070.8_1_16:55513101-55513161:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2453918457031 3 480.589599 1438.74697 0.077134 3.707E-05 -0.95119 -0.00045713 -0.87406 -0.00042006 480.5891469753651 95.921 0.71159 91.872 91.479 92.191 -4.0496 56 20 4 0 0 0 0.59836 2 18821 18790;18821 4.6037 1.5315 1 11822000 + 1660 20026 866 868 1942;1943 1943 0.045143598486447445 AELWRRLFDPH 11 Unmodified _AELWRRLFDPH_ 0 0 0 REV__ENST00000219070.8_1_16:55513101-55513161:+|nuORF REV__ENST00000219070.8_1_16:55513101-55513161:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 480.589599 1438.74697 -0.21429 -0.00010298 -0.57026 -0.00027406 -0.78455 -0.00037704 480.5893309303133 91.925 0.63239 91.925 91.594 92.226 0 0.097615 0.00029902 NaN 0.65807 48 17 4 NaN NaN NaN NaN 0 NaN NaN 0 7333100 + 1661 20026 866 868 0.045143598486447445 AELWRRLFDPH 11 Unmodified _AELWRRLFDPH_ 0 0 0 REV__ENST00000219070.8_1_16:55513101-55513161:+|nuORF REV__ENST00000219070.8_1_16:55513101-55513161:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 480.589599 1438.74697 0.077134 3.707E-05 -0.95119 -0.00045713 -0.87406 -0.00042006 480.5891469753651 95.921 0.71159 91.872 91.479 92.191 -4.0496 0.043872 -0.0002502 NaN 0.65807 56 20 4 NaN NaN NaN NaN 0 NaN NaN 0 11822000 + 1662 20026 866 868 0.045143598486447445 AELWRRLFDPH 11 Unmodified _AELWRRLFDPH_ 0 0 0 REV__ENST00000219070.8_1_16:55513101-55513161:+|nuORF REV__ENST00000219070.8_1_16:55513101-55513161:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 480.589599 1438.74697 -0.063133 -3.0341E-05 -0.64847 -0.00031165 -0.7116 -0.00034199 480.58923000727424 95.597 0.69106 91.716 91.403 92.094 -3.881 -0.1117 0.00018626 NaN 0.65807 58 19 4 NaN NaN NaN NaN 0 NaN NaN 0 9799600 + 1663 20026 866 868 0.045143598486447445 AELWRSSL 8 Unmodified _AELWRSSL_ 0 0 0 REV__ENST00000405510.5_2_22:39131979-39132159:-|nuORF REV__ENST00000405510.5_2_22:39131979-39132159:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2450866699219 2 481.258717 960.50288 0.059223 2.8502E-05 -0.53531 -0.00025762 -0.47608 -0.00022912 481.2584294564449 101.22 0.52643 97.056 96.666 97.192 -4.1594 22 14 2 0 0 0 0.95515 1 19895 19895 21.747 3.6117 1 895130 + 1664 21383 867 869 1944 1944 0.021049007547162546 AELWRSSL 8 Unmodified _AELWRSSL_ 0 0 0 REV__ENST00000405510.5_2_22:39131979-39132159:-|nuORF REV__ENST00000405510.5_2_22:39131979-39132159:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78314208984375 2 481.258717 960.50288 0.33741 0.00016238 -0.3193 -0.00015366 0.018114 8.7175E-06 481.25841331198365 101.24 0.4737 96.942 96.738 97.212 -4.297 19 13 2 0 0 0 0.69713 1 19359 19359 14.838 4.0143 1 1259800 + 1665 21383 867 869 1945 1945 0.021049007547162546 AELWRSSL 8 Unmodified _AELWRSSL_ 0 0 0 REV__ENST00000405510.5_2_22:39131979-39132159:-|nuORF REV__ENST00000405510.5_2_22:39131979-39132159:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2454833984375 2 481.258717 960.50288 0.33741 0.00016238 -0.3193 -0.00015366 0.018114 8.7175E-06 481.25841331198365 101.24 0.4737 96.942 96.738 97.212 -4.297 19 13 2 0 0 0 0.91917 1 19367 19367 6.2058 0 1 1259800 + 1666 21383 867 869 1946 1946 0.021049007547162546 AELYGIWLT 9 Unmodified _AELYGIWLT_ 0 0 0 SV2C|p.T412A|1|0.11|ENSG00000122012|chr5:76291317-76291317|A/G|missense_variant SV2C|p.T412A|1|0.11|ENSG00000122012|chr5:76291317-76291317|A/G|missense_variant SV2C|p.T412A|1|0.11|ENSG00000122012|chr5:76291317-76291317|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2835693359375 2 533.2844 1064.55425 -0.37362 -0.00019924 -0.64424 -0.00034356 -1.0179 -0.00054281 533.2836888994287 107.54 0.59637 103.22 102.86 103.45 -4.32 26 14 2 0 0 0 0.31714 1 21177 21177 30.637 3.7529 1 1929600 1667 25799 868 870 1947 1947 0.024552247287601858 AELYKLNNT 9 Unmodified _AELYKLNNT_ 0 0 0 REV__TPM4|p.S170Y|2|0.18|ENSG00000167460|chr19:16089098-16089098|C/A|missense_variant REV__TPM4|p.S170Y|2|0.18|ENSG00000167460|chr19:16089098-16089098|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825927734375 2 533.282389 1064.55022 0.75738 0.0004039 1.3443 0.00071688 2.1017 0.0011208 533.2827773165963 107.28 0.71266 103.15 102.84 103.56 -4.135 34 20 3 0 0 0 0.24263 1 20644 20644 34.932 5.8505 1 2144800 + 1668 24838 869 871 1948 1948 0.02053135235018999 AELYRVLEA 9 Unmodified _AELYRVLEA_ 0 0 0 nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000013573|Q96FC9-5|DDX11;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;DDX11|p.G621Vfs*32|1|0.1|ENSG00000013573|chr12:31097979-31097979|G/-|frameshift_variant;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P nc|ENSG00000214826|Q92771|DDX12P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2686157226562 2 532.292756 1062.57096 0.09801 5.217E-05 -0.010187 -5.4224E-06 0.087823 4.6748E-05 532.2926956371039 115.78 0.61975 111.29 110.97 111.59 -4.4856 36 17 3 0 0 0 0.069179 1 22841 22841 43.982 26.869 1 2891000 1669 12209;12595 870 872 1949 1949 0.04217725614716983 AELYRVLEA 9 Unmodified _AELYRVLEA_ 0 0 0 nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000013573|Q96FC9-5|DDX11;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;DDX11|p.G621Vfs*32|1|0.1|ENSG00000013573|chr12:31097979-31097979|G/-|frameshift_variant;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P nc|ENSG00000214826|Q92771|DDX12P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2800903320312 2 532.292756 1062.57096 0.63727 0.00033921 -0.9051 -0.00048178 -0.26783 -0.00014256 532.2922986655303 115.86 0.8242 111.28 110.91 111.73 -4.5815 51 23 3 0 0 0 0.25976 1 22251 22251 24.882 23.474 1 3423400 1670 12209;12595 870 872 1950 1950 0.04217725614716983 AELYRVLEA 9 Unmodified _AELYRVLEA_ 0 0 0 nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000013573|Q96FC9-5|DDX11;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;DDX11|p.G621Vfs*32|1|0.1|ENSG00000013573|chr12:31097979-31097979|G/-|frameshift_variant;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P nc|ENSG00000214826|Q92771|DDX12P MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.292756 1062.57096 0.090141 4.7982E-05 -0.19644 -0.00010456 -0.1063 -5.658E-05 532.2926189426057 111.42 0.59003 111.42 111.14 111.73 0 0.093988 0.00022224 NaN 43.982 31 16 2 NaN NaN NaN NaN 0 NaN NaN 0 4606200 1671 12209;12595 870 872 0.04217725614716983 AELYRVLEA 9 Unmodified _AELYRVLEA_ 0 0 0 nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000013573|Q96FC9-5|DDX11;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;DDX11|p.G621Vfs*32|1|0.1|ENSG00000013573|chr12:31097979-31097979|G/-|frameshift_variant;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P nc|ENSG00000214826|Q92771|DDX12P MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.292756 1062.57096 0.56003 0.0002981 -0.64321 -0.00034237 -0.083176 -4.4274E-05 532.2924031074564 115.63 0.81008 111.31 110.86 111.67 -4.3243 -0.015615 -0.00025339 NaN 43.982 44 22 3 NaN NaN NaN NaN 0 NaN NaN 0 3189100 1672 12209;12595 870 872 0.04217725614716983 AELYRVPA 8 Unmodified _AELYRVPA_ 0 0 0 ENSG00000243725|ENST00000371281|TTC4;ENST00000486091.1_1_1:55203206-55207183:+|nuORF ENSG00000243725|ENST00000371281|TTC4 ENSG00000243725|ENST00000371281|TTC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2287902832031 2 459.75581 917.497067 -0.18589 -8.5463E-05 -1.8789 -0.00086382 -2.0648 -0.00094928 459.7559099577473 81.62 0.90397 77.932 77.214 78.118 -3.6879 36 25 2 0 0 0 0.70613 1 15451 15451 13.508 0.97634 1 1086900 1673 7873 871 873 1951 1951 0.035018022430335805 AEMAKEQL 8 Unmodified _AEMAKEQL_ 0 0 0 REV__ENST00000563678.1_1_16:31717492-31719413:+|nuORF REV__ENST00000563678.1_1_16:31717492-31719413:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.231689453125 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 86.014 1 86.014 85.514 86.514 0 0 0 0 0.21452 1 16787 16787 13.508 1.8676 1 + 1674 23083 872 874 1952 1952 -0.014418541082250158 AEMEEDEVVPP 11 Unmodified _AEMEEDEVVPP_ 0 0 0 REV__NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant REV__NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7708129882812 2 622.771193 1243.52783 NaN NaN NaN NaN NaN NaN NaN 39.894 1 37.354 36.854 37.854 -2.5398 0 0 0 0.23324 1 7135 7135 5.7319 1.7875 1 + 1675 19251 873 875 1953 1953 -0.08418877015560611 AEMEEDLQD 9 Unmodified _AEMEEDLQD_ 0 0 0 REV__nc|ENSG00000133392|P35749-4|MYH11 REV__nc|ENSG00000133392|P35749-4|MYH11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 3 360.4781 1078.41247 -0.56271 -0.00020284 0.7794 0.00028096 0.2167 7.8115E-05 360.47838822836815 65.063 0.79597 65.063 64.549 65.345 0 41 22 2 0 0 0 0.87797 1 12508 12508 6.6304 3.0433 1 2602800 + 1676 16164 874 876 1954 1954 -0.12359981146528298 AEMEHGLHEA 10 Unmodified _AEMEHGLHEA_ 0 0 0 nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-9|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54 nc|ENSG00000166348|Q70EL1-7|USP54 nc|ENSG00000166348|Q70EL1-7|USP54 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2120666503906 3 375.166079 1122.47641 -0.15434 -5.7902E-05 -0.048572 -1.8223E-05 -0.20291 -7.6124E-05 375.1660968151112 22.4 0.66691 22.4 22.121 22.788 0 53 18 4 0 0 0 0.72703 1 3747 3747 8.4443 1.3426 1 21130000 1677 5715 875 877 1955 1955 -0.07993156198926954 AEMEHGLHEA 10 Unmodified _AEMEHGLHEA_ 0 0 0 nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-9|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54 nc|ENSG00000166348|Q70EL1-7|USP54 nc|ENSG00000166348|Q70EL1-7|USP54 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2154541015625 3 375.166079 1122.47641 -0.020232 -7.5905E-06 -0.35855 -0.00013452 -0.37879 -0.00014211 375.1659880031131 23.876 0.7591 22.342 22.026 22.785 -1.5342 68 21 5 0 0 0 0.20784 1 3869 3869 34.967 27.49 1 28315000 1678 5715 875 877 1956 1956 -0.07993156198926954 AEMEHGLHEA 10 Unmodified _AEMEHGLHEA_ 0 0 0 nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-9|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54 nc|ENSG00000166348|Q70EL1-7|USP54 nc|ENSG00000166348|Q70EL1-7|USP54 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21258544921875 3 375.166079 1122.47641 -1.0016 -0.00037575 0.56386 0.00021154 -0.43771 -0.00016421 375.1663526918552 24.159 0.72418 22.306 22.02 22.744 -1.8534 56 20 4 0 0 0 0.36892 1 3891 3891 32.898 18.492 1 17431000 1679 5715 875 877 1957 1957 -0.07993156198926954 AEMELQAKLTA 11 Unmodified _AEMELQAKLTA_ 0 0 0 nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 nc|ENSG00000177426|Q15583-4|TGIF1 nc|ENSG00000177426|Q15583-4|TGIF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.301025390625 2 602.815738 1203.61692 0.28221 0.00017012 -0.074275 -4.4774E-05 0.20794 0.00012535 602.8157414697696 95.864 0.76126 95.864 95.456 96.217 0 63 21 4 0 0 0 8.7494E-09 1 18774 18774 160.81 67.643 1 15781000 1680 6511 876 878 1958 1958 0.023260027346395873 AEMELQAKLTA 11 Unmodified _AEMELQAKLTA_ 0 0 0 nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 nc|ENSG00000177426|Q15583-4|TGIF1 nc|ENSG00000177426|Q15583-4|TGIF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2789916992188 2 602.815738 1203.61692 1.0302 0.00062102 -0.77803 -0.00046901 0.25217 0.00015201 602.8153886059938 99.788 1.1158 95.656 95.338 96.454 -4.1326 77 31 4 0 0 0 0.078114 1 19657 19657 78.116 36.16 1 18749000 1681 6511 876 878 1959 1959 0.023260027346395873 AEMELQAKLTA 11 Unmodified _AEMELQAKLTA_ 0 0 0 nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 nc|ENSG00000177426|Q15583-4|TGIF1 nc|ENSG00000177426|Q15583-4|TGIF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.278564453125 2 602.815738 1203.61692 0.60397 0.00036408 -0.2785 -0.00016789 0.32547 0.0001962 602.8156277430638 99.997 0.80885 95.7 95.347 96.156 -4.297 70 23 4 0 0 0 0.10256 1 19179 19179 66.55 24.594 1 28025000 1682 6511 876 878 1960 1960 0.023260027346395873 AEMELQAKLTA 11 Unmodified _AEMELQAKLTA_ 0 0 0 nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 nc|ENSG00000177426|Q15583-4|TGIF1 nc|ENSG00000177426|Q15583-4|TGIF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2752075195312 2 602.815738 1203.61692 0.3288 0.00019821 -0.031312 -1.8875E-05 0.29749 0.00017933 602.8157388271242 99.717 0.97196 95.76 95.34 96.312 -3.9564 75 27 4 0 0 0 0.0060086 1 19113 19113 126.33 62.369 1 20813000 1683 6511 876 878 1961 1961 0.023260027346395873 AEMFKYLY 8 Unmodified _AEMFKYLY_ 0 0 0 EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENSG00000116406|ENST00000318130|EDEM3 EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2609252929688 2 532.759704 1063.50485 1.1181 0.0005957 -1.0202 -0.00054353 0.097922 5.2169E-05 532.7590065851833 26.609 0.40474 24.827 24.726 25.13 -1.7821 16 11 2 0 0 0 0.66265 1 4704 4704 18.135 8.0611 1 726590 1684 914 877 879 1962 1962 -0.024358065516935312 AEMFKYLY 8 Unmodified _AEMFKYLY_ 0 0 0 EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENSG00000116406|ENST00000318130|EDEM3 EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26171875 2 532.759704 1063.50485 0.12415 6.6143E-05 -0.29036 -0.00015469 -0.16621 -8.855E-05 532.7594066139202 26.765 0.3081 24.843 24.675 24.984 -1.9222 14 8 2 0 0 0 0.66265 1 4432 4432 18.135 3.2967 1 834330 1685 914 877 879 1963 1963 -0.024358065516935312 AEMFSDFHGY 10 Unmodified _AEMFSDFHGY_ 0 0 0 ENSG00000204361|ENST00000389586|NXPE2 ENSG00000204361|ENST00000389586|NXPE2 ENSG00000204361|ENST00000389586|NXPE2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2902221679688 2 602.242406 1202.47026 NaN NaN NaN NaN NaN NaN NaN 98.198 1 94.066 93.566 94.566 -4.1326 0 0 0 0.22588 1 19280 19280 6.7232 0.51738 1 1686 7573 878 880 1964 1964 -0.12287674430444895 AEMGRFSISP 10 Unmodified _AEMGRFSISP_ 0 0 0 ENST00000553252.1_1_12:46764947-46766316:-|nuORF;SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant;ENSG00000134294|ENST00000256689|SLC38A2 ENST00000553252.1_1_12:46764947-46766316:-|nuORF ENST00000553252.1_1_12:46764947-46766316:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.76904296875 2 547.768591 1093.52263 0.72047 0.00039465 0.23722 0.00012994 0.95769 0.00052459 547.7687477921093 102.68 0.89961 102.68 102.3 103.2 0 42 25 2 0 0 0 0.30678 3 20206 20110;20162;20206 37.075 14.338 1 3830900 1687 3842 879 881 1965;1966;1967 1967 -0.020390912968423436 AEMGRFSISP 10 Unmodified _AEMGRFSISP_ 0 0 0 ENST00000553252.1_1_12:46764947-46766316:-|nuORF;SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant;ENSG00000134294|ENST00000256689|SLC38A2 ENST00000553252.1_1_12:46764947-46766316:-|nuORF ENST00000553252.1_1_12:46764947-46766316:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7687377929688 2 547.768591 1093.52263 -0.22364 -0.0001225 2.7489 0.0015057 2.5252 0.0013832 547.7693890245188 107.08 1.7112 102.76 101.67 103.38 -4.32 106 48 4 0 0 0 0.12549 4 21069 21009;21019;21069;21119 53.317 23.476 1 5866600 1688 3842 879 881 1968;1969;1970;1971 1970 -0.020390912968423436 AEMGRFSISP 10 Unmodified _AEMGRFSISP_ 0 0 0 ENST00000553252.1_1_12:46764947-46766316:-|nuORF;SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant;ENSG00000134294|ENST00000256689|SLC38A2 ENST00000553252.1_1_12:46764947-46766316:-|nuORF ENST00000553252.1_1_12:46764947-46766316:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7686767578125 2 547.768591 1093.52263 0.0076964 4.2158E-06 1.9853 0.0010875 1.993 0.0010917 547.7689736724266 107.08 1.209 102.67 102.09 103.3 -4.4121 76 34 3 0 0 0 0.092113 4 20542 20501;20542;20559;20586 63.227 28.295 1 4172600 1689 3842 879 881 1972;1973;1974;1975 1973 -0.020390912968423436 AEMGRFSISP 10 Unmodified _AEMGRFSISP_ 0 0 0 ENST00000553252.1_1_12:46764947-46766316:-|nuORF;SLC38A2|p.F332Cfs*28|1|0.09|ENSG00000134294|chr12:46363785-46363786|-/CAAAAACAAAAAC|frameshift_variant;ENSG00000134294|ENST00000256689|SLC38A2 ENST00000553252.1_1_12:46764947-46766316:-|nuORF ENST00000553252.1_1_12:46764947-46766316:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7688598632812 2 547.768591 1093.52263 0.79219 0.00043394 0.48949 0.00026813 1.2817 0.00070206 547.7686670301196 106.69 0.9614 102.6 102.16 103.12 -4.0913 50 27 2 0 0 0 0.12549 4 20497 20453;20497;20545;20590 53.317 19.214 1 3742400 1690 3842 879 881 1976;1977;1978;1979 1977 -0.020390912968423436 AEMGRPRQH 9 Unmodified _AEMGRPRQH_ 0 0 0 REV__ENST00000266775.13_1_12:104359668-104366780:+|nuORF REV__ENST00000266775.13_1_12:104359668-104366780:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.279296875 2 541.269624 1080.5247 0.16651 9.0129E-05 2.5938 0.0014039 2.7603 0.0014941 541.7747796842235 18.489 0.10275 17.178 17.108 17.211 -1.3109 4 2 2 0 0 0 0.74257 1 2991 2991 4.3292 0.38484 1 92448 + 1691 20255 880 882 1980 1980 -0.012346177683639326 AEMHKPDQ 8 Unmodified _AEMHKPDQ_ 0 0 0 REV__nc|ENSG00000139197|P50542-2|PEX5 REV__nc|ENSG00000139197|P50542-2|PEX5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7433776855469 2 478.218734 954.422915 -0.061362 -2.9345E-05 -0.017048 -8.1526E-06 -0.07841 -3.7497E-05 478.21863839230434 23.078 0.4104 23.078 22.857 23.267 0 19 11 2 0 0 0 0.99312 1 3926 3926 10.074 1.4806 1 1495900 + 1692 16507 881 883 1981 1981 -0.056119089107937725 AEMHKPDQ 8 Unmodified _AEMHKPDQ_ 0 0 0 REV__nc|ENSG00000139197|P50542-2|PEX5 REV__nc|ENSG00000139197|P50542-2|PEX5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7434387207031 2 478.218734 954.422915 1.0358 0.00049535 -1.0784 -0.00051571 -0.042572 -2.0359E-05 478.21814507584264 24.748 0.41325 23.1 22.822 23.235 -1.6482 23 11 3 0 0 0 0.83888 1 4299 4299 24.021 0 1 1173200 + 1693 16507 881 883 1982 1982 -0.056119089107937725 AEMIKSGRV 9 Unmodified _AEMIKSGRV_ 0 0 0 REV__ENSG00000198690|ENST00000362065|FAN1 REV__ENSG00000198690|ENST00000362065|FAN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 331.008056640625 3 330.851543 989.5328 -0.74507 -0.00024651 0.78707 0.0002604 0.041995 1.3894E-05 330.8517575776592 51.608 0.48703 48.557 48.417 48.904 -3.0517 21 13 2 0 0 0 0.88284 1 9504 9504 0.96228 0 1 993750 + 1694 19435 882 884 1983 1983 0.03761516428403411 AEMKLIVH 8 Unmodified _AEMKLIVH_ 0 0 0 REV__RNF208|p.D81Gfs*20|1|0.34|ENSG00000212864|chr9:137220971-137220972|-/C|frameshift_variant REV__RNF208|p.D81Gfs*20|1|0.34|ENSG00000212864|chr9:137220971-137220972|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.3128662109375 3 314.181001 939.521173 NaN NaN NaN NaN NaN NaN NaN 27.789 1 25.793 25.293 26.293 -1.9962 0 0 0 0.21486 1 4661 4661 3.9444 0 1 + 1695 19631 883 885 1984 1984 0.048993194050581224 AEMNGKLIA 9 Oxidation (M) _AEM(Oxidation (M))NGKLIA_ AEM(1)NGKLIA AEM(110)NGKLIA 0 0 1 IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant;ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000491112.1_1_1:185269520-185270317:-|nuORF;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7774658203125 2 481.75241 961.490267 0.020646 9.9464E-06 -0.25807 -0.00012433 -0.23742 -0.00011438 481.75228511302873 32.38 0.6285 32.38 32.047 32.675 0 49 17 4 0 0 0 0.026784 1 5869 5869 110.55 51.874 1 11239000 1696 2940 884 886 1985 1985 37 0.007981213001698961 AEMNGKLIA 9 Oxidation (M) _AEM(Oxidation (M))NGKLIA_ AEM(1)NGKLIA AEM(100)NGKLIA 0 0 1 IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant;ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000491112.1_1_1:185269520-185270317:-|nuORF;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7768249511719 2 481.75241 961.490267 -0.10624 -5.1181E-05 -0.11269 -5.4287E-05 -0.21893 -0.00010547 481.75237346940366 34.475 0.66131 32.158 31.803 32.464 -2.3175 44 18 4 0 0 0 0.028725 1 6340 6340 103.42 44.741 1 6439200 1697 2940 884 886 1986 1986 37 0.007981213001698961 AEMNGKLIA 9 Oxidation (M) _AEM(Oxidation (M))NGKLIA_ AEM(1)NGKLIA AEM(70)NGKLIA 0 0 1 IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant;ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000491112.1_1_1:185269520-185270317:-|nuORF;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2547607421875 2 481.75241 961.490267 0.22981 0.00011071 -0.66232 -0.00031908 -0.43252 -0.00020837 481.7521562685747 34.325 0.69427 32.161 31.891 32.585 -2.1641 47 19 4 0 0 0 0.078741 1 6018 6018 70.332 20.399 1 6786400 1698 2940 884 886 1987 1987 37 0.007981213001698961 AEMNGMHM 8 Unmodified _AEMNGMHM_ 0 0 0 REV__tr|U7SSY8|U7SSY8_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01421PE=4SV=1 REV__tr|U7SSY8|U7SSY8_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01421PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24127197265625 2 460.674791 919.335028 0.13231 6.0953E-05 1.5526 0.00071524 1.6849 0.0007762 460.6753744098027 20.081 0.55314 18.685 18.276 18.829 -1.3966 23 15 2 0 0 0 0.80867 1 3257 3257 2.5775 0 1 384440 + 1699 25075 885 887 1988 1988 -0.12786569097409028 AEMNKDPL 8 Unmodified _AEMNKDPL_ 0 0 0 REV__ENST00000423854.6_1_18:33722810-33722882:+|nuORF REV__ENST00000423854.6_1_18:33722810-33722882:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 459.233642578125 2 459.223485 916.432418 NaN NaN NaN NaN NaN NaN NaN 48.767 1 45.76 45.26 46.26 -3.0068 0 0 0 0.21486 1 8929 8929 9.3474 0.75416 1 + 1700 21538 886 888 1989 1989 -0.029141406252620072 AEMPLFKLYMV 11 Unmodified _AEMPLFKLYMV_ 0 0 0 ENST00000595908.5_1_19:6732389-6735558:-|nuORF;ENSG00000125734|ENST00000264080|GPR108 ENST00000595908.5_1_19:6732389-6735558:-|nuORF ENST00000595908.5_1_19:6732389-6735558:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 448.34979248046875 3 447.903027 1340.68725 0.79027 0.00035397 2.4998 0.0011197 3.29 0.0014736 447.9040407546491 27.575 0.20627 25.793 25.737 25.943 -1.7821 9 5 2 0 0 0 0.96216 1 4908 4908 0.45452 0.31463 1 824620 1701 3380 887 889 1990 1990 0.03053584798749398 AEMPPSLDTSR 11 Unmodified _AEMPPSLDTSR_ 0 0 0 ENSG00000276231|ENST00000619866|PIK3R6 ENSG00000276231|ENST00000619866|PIK3R6 ENSG00000276231|ENST00000619866|PIK3R6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.28515625 2 602.287345 1202.56014 NaN NaN NaN NaN NaN NaN NaN 97.564 1 93.645 93.145 94.145 -3.9194 0 0 0 0.22595 1 18722 18722 11.495 2.9014 1 1702 8030 888 890 1991 1991 -0.033040448219026075 AEMPQNYRP 9 Unmodified _AEMPQNYRP_ 0 0 0 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 553.4452514648438 2 553.258391 1104.50223 NaN NaN NaN NaN NaN NaN NaN 55.434 1 52.296 51.796 52.796 -3.1377 0 0 0 0.21065 1 10290 10290 20.454 12.543 1 1703 3166 889 891 1992 1992 -0.04584261956665614 AEMQSAMNLA 10 Unmodified _AEMQSAMNLA_ 0 0 0 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2662963867188 2 533.238809 1064.46307 -0.039937 -2.1296E-05 -0.26028 -0.00013879 -0.30021 -0.00016009 533.2384903609736 89.773 0.72572 89.773 89.495 90.221 0 23 20 2 0 0 0 0.41868 1 17540 17540 21.75 20.535 1 1889500 1704 3426 890 892 1993 1993 -0.06658730302524418 AEMQSAMNLA 10 Unmodified _AEMQSAMNLA_ 0 0 0 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2681274414062 2 533.238809 1064.46307 0.58759 0.00031333 -0.79932 -0.00042623 -0.21173 -0.0001129 533.2384413742725 93.929 0.48015 89.786 89.55 90.03 -4.1435 18 13 2 0 0 0 0.25854 1 17911 17911 45.355 40.639 1 1657100 1705 3426 890 892 1994 1994 -0.06658730302524418 AEMRQKEIP 9 Unmodified _AEMRQKEIP_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 368.86273193359375 3 367.862219 1100.56483 0.34536 0.00012704 -0.42601 -0.00015671 -0.080658 -2.9671E-05 367.8620679198774 29.922 1.1171 28.029 27.51 28.627 -1.8928 101 31 4 0 0 0 0.35556 1 5168 5168 12.241 11.832 1 8560900 1706 3641 891 893 1995 1995 0.018568841115438772 AEMRQKEIP 9 Unmodified _AEMRQKEIP_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 367.862219 1100.56483 -0.15228 -5.6016E-05 0.00048918 1.7995E-07 -0.15179 -5.5837E-05 367.8622369858277 28.004 1.0705 28.004 27.528 28.598 0 0.039368 0.00025605 NaN 12.241 91 30 4 NaN NaN NaN NaN 0 NaN NaN 0 9878500 1707 3641 891 893 0.018568841115438772 AEMRQKEIP 9 Unmodified _AEMRQKEIP_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 367.862219 1100.56483 0.27769 0.00010215 -0.45642 -0.0001679 -0.17873 -6.5748E-05 367.8620804953281 29.982 1.3692 27.865 27.35 28.719 -2.1167 -0.099567 -0.00024819 NaN 12.241 108 38 4 NaN NaN NaN NaN 0 NaN NaN 0 8905100 1708 3641 891 893 0.018568841115438772 AEMRQKEIP 9 Unmodified _AEMRQKEIP_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 367.862219 1100.56483 -0.14008 -5.153E-05 -0.016669 -6.132E-06 -0.15675 -5.7662E-05 367.8622345667665 30.035 1.3309 27.96 27.413 28.744 -2.0743 -0.0041357 0.00023711 NaN 12.241 113 37 5 NaN NaN NaN NaN 0 NaN NaN 0 7740800 1709 3641 891 893 0.018568841115438772 AEMRSLPA 8 Unmodified _AEMRSLPA_ 0 0 0 REV__nc|ENSG00000197324|Q7Z4F1-2|LRP10 REV__nc|ENSG00000197324|Q7Z4F1-2|LRP10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21710205078125 2 437.726195 873.437837 0.50425 0.00022072 -0.52545 -0.00023 -0.0212 -9.28E-06 437.7259470765357 47.805 0.52878 47.805 47.505 48.034 0 23 14 2 0 0 0 0.55701 1 9008 9008 34.402 2.0962 1 2275100 + 1710 19324 892 894 1996 1996 -0.0039441704279852274 AEMYQELMVM 10 Unmodified _AEMYQELMVM_ 0 0 0 REV__ENST00000359039.4_1_9:21333516-21333549:-|nuORF REV__ENST00000359039.4_1_9:21333516-21333549:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7698974609375 2 622.771628 1243.5287 NaN NaN NaN NaN NaN NaN NaN 26.778 1 26.778 26.278 27.278 0 0 0 0 0.22588 1 4701 4701 3.5965 0.31518 1 + 1711 20846 893 895 1997 1997 -0.0833207717184905 AEMYQELMVM 10 Unmodified _AEMYQELMVM_ 0 0 0 REV__ENST00000359039.4_1_9:21333516-21333549:-|nuORF REV__ENST00000359039.4_1_9:21333516-21333549:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7701416015625 2 622.771628 1243.5287 NaN NaN NaN NaN NaN NaN NaN 47.935 1 47.935 47.435 48.435 0 0 0 0 0.22588 1 9043 9043 6.7232 0 1 + 1712 20846 893 895 1998 1998 -0.0833207717184905 AENAATYNIK 10 Unmodified _AENAATYNIK_ 0 0 0 REV__PAEP|p.V106A|1|0.48|ENSG00000122133|chr9:135564250-135564250|T/C|missense_variant REV__PAEP|p.V106A|1|0.48|ENSG00000122133|chr9:135564250-135564250|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7789306640625 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 35.169 1 32.917 32.417 33.417 -2.2527 0 0 0 0.22588 1 6187 6187 6.2058 0 1 + 1713 24426 894 896 1999 1999 -0.0026405277033063612 AENAGLSSTA 10 Unmodified _AENAGLSSTA_ 0 0 0 ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2352294921875 2 460.719621 919.42469 0.26373 0.00012151 0.20527 9.457E-05 0.469 0.00021608 460.7196744382802 25.189 0.57963 25.189 24.846 25.425 0 41 16 3 0 0 0 0.96327 1 4352 4352 63.167 58.69 1 3238100 1714 6130 895 897 2000 2000 -0.03824576621184406 AENAGLSSTA 10 Unmodified _AENAGLSSTA_ 0 0 0 ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2472229003906 2 460.719621 919.42469 0.10393 4.7882E-05 0.41145 0.00018956 0.51538 0.00023744 460.7197798576643 26.582 0.77003 24.947 24.477 25.247 -1.6347 49 21 3 0 0 0 0.82288 1 4425 4425 23.79 16.501 1 1717200 1715 6130 895 897 2001 2001 -0.03824576621184406 AENAHLTYK 9 Unmodified _AENAHLTYK_ 0 0 0 ENSG00000197557|ENST00000355689|TTC30A ENSG00000197557|ENST00000355689|TTC30A ENSG00000197557|ENST00000355689|TTC30A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.69091796875 2 523.766906 1045.51926 NaN NaN NaN NaN NaN NaN NaN 17.634 1 16.362 15.862 16.862 -1.2722 0 0 0 0.23508 1 2608 2608 3.9444 0.3479 1 1716 7378 896 898 2002 2002 -0.0016801807919364364 AENALDVAA 9 Unmodified _AENALDVAA_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;ENST00000586052.5_1_17:76423133-76435249:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2193908691406 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 44.035 1 41.245 40.745 41.745 -2.79 0 0 0 0.19646 1 8265 8265 0.073264 0 1 1717 7127 897 899 2003 2003 -0.017353712702401936 AENAWITSA 9 Unmodified _AENAWITSA_ 0 0 0 ENST00000607421.1_1_12:7053555-7053762:-|nuORF ENST00000607421.1_1_12:7053555-7053762:-|nuORF ENST00000607421.1_1_12:7053555-7053762:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7799987792969 2 481.732532 961.45051 -0.20556 -9.9023E-05 0.87113 0.00041965 0.66557 0.00032063 481.7326957468943 92.56 0.5504 92.56 92.301 92.851 0 25 15 2 0 0 0 0.50308 1 18136 18136 38.176 16.639 1 1602700 1718 11762 898 900 2004 2004 -0.031756823789010014 AENAWITSA 9 Unmodified _AENAWITSA_ 0 0 0 ENST00000607421.1_1_12:7053555-7053762:-|nuORF ENST00000607421.1_1_12:7053555-7053762:-|nuORF ENST00000607421.1_1_12:7053555-7053762:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2530822753906 2 481.732532 961.45051 0.084733 4.0818E-05 0.44038 0.00021215 0.52512 0.00025297 481.7325941749056 96.773 0.55315 92.676 92.421 92.974 -4.0978 23 15 2 0 0 0 0.70585 1 19006 19006 28.495 15.452 1 1271500 1719 11762 898 900 2005 2005 -0.031756823789010014 AENAWITSA 9 Unmodified _AENAWITSA_ 0 0 0 ENST00000607421.1_1_12:7053555-7053762:-|nuORF ENST00000607421.1_1_12:7053555-7053762:-|nuORF ENST00000607421.1_1_12:7053555-7053762:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2534484863281 2 481.732532 961.45051 0.16811 8.0984E-05 0.16843 8.1138E-05 0.33654 0.00016212 481.73238870225305 97.02 0.6436 92.785 92.338 92.982 -4.2348 32 18 2 0 0 0 0.39339 1 18530 18530 36.506 16.053 1 1571000 1720 11762 898 900 2006 2006 -0.031756823789010014 AENDPFVRP 9 Unmodified _AENDPFVRP_ 0 0 0 ENST00000478683.1_1_2:171902682-171910351:-|nuORF;ENST00000456760.1_1_9:125449379-125449940:+|nuORF;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1 ENST00000478683.1_1_2:171902682-171910351:-|nuORF ENST00000478683.1_1_2:171902682-171910351:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2710571289062 2 522.759081 1043.50361 -0.13636 -7.1282E-05 0.30851 0.00016128 0.17216 8.9997E-05 522.7591775042857 67.652 0.80403 67.652 67.159 67.963 0 41 22 2 0 0 0 0.18095 1 13081 13081 39.213 22.1 1 3478900 1721 7461 899 901 2007 2007 -0.01640304596230635 AENDPFVRP 9 Unmodified _AENDPFVRP_ 0 0 0 ENST00000478683.1_1_2:171902682-171910351:-|nuORF;ENST00000456760.1_1_9:125449379-125449940:+|nuORF;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1 ENST00000478683.1_1_2:171902682-171910351:-|nuORF ENST00000478683.1_1_2:171902682-171910351:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2826538085938 2 522.759081 1043.50361 -0.31176 -0.00016297 0.48315 0.00025257 0.1714 8.96E-05 522.7590808160322 71.346 0.8428 67.766 67.298 68.14 -3.5798 57 23 3 0 0 0 0.30909 1 13423 13423 34.932 8.5908 1 4395100 1722 7461 899 901 2008 2008 -0.01640304596230635 AENDRFEEA 9 Unmodified _AENDRFEEA_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2849731445312 2 540.73326 1079.45197 0.33825 0.0001829 -0.31892 -0.00017245 0.019324 1.0449E-05 540.733087064193 28.458 0.55683 28.458 28.147 28.704 0 37 15 3 0 0 0 0.029693 1 5064 5064 81.915 32.361 1 4390100 1723 5480 900 902 2009 2009 -0.0845809308079879 AENDSHKR 8 Unmodified _AENDSHKR_ 0 0 0 REV__nc|ENSG00000118482|Q92576-2|PHF3 REV__nc|ENSG00000118482|Q92576-2|PHF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7309265136719 2 478.730855 955.447156 NaN NaN NaN NaN NaN NaN NaN 15.422 1 14.2 13.7 14.7 -1.2219 0 0 0 0.21486 1 2157 2157 5.2307 0 1 + 1724 15554 901 903 2010 2010 -0.03234932432894766 AENDVKLGA 9 Unmodified _AENDVKLGA_ 0 0 0 ENSG00000164332|ENST00000296786|UBLCP1 ENSG00000164332|ENST00000296786|UBLCP1 ENSG00000164332|ENST00000296786|UBLCP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2236328125 2 458.740357 915.46616 0.25311 0.00011611 -0.049233 -2.2585E-05 0.20388 9.3529E-05 458.74027433008246 33.418 0.63097 33.418 33.059 33.69 0 40 17 3 0 0 0 0.033674 1 6099 6099 96.936 18.207 1 7369200 1725 5536 902 904 2011 2011 0.005046041381433497 AENEAETKLQA 11 Unmodified _AENEAETKLQA_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.296142578125 2 602.296224 1202.5779 0.40487 0.00024385 -0.073356 -4.4182E-05 0.33152 0.00019967 602.2963077556152 32.043 0.34421 32.043 31.844 32.188 0 15 9 2 0 0 0 0.096511 1 5787 5787 72.59 41.886 1 1005600 1726 4024 903 905 2012 2012 -0.015290062953681627 AENEAETKLQA 11 Unmodified _AENEAETKLQA_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2958984375 2 602.296224 1202.5779 0.87426 0.00052656 -0.87627 -0.00052778 -0.0020155 -1.2139E-06 602.2956750673145 34.402 0.27748 32.084 31.913 32.19 -2.3175 14 7 2 0 0 0 2.6963E-05 2 6320 6319;6320 146.57 109.5 1 1270200 1727 4024 903 905 2013;2014 2014 -0.015290062953681627 AENEAETKLQA 11 Unmodified _AENEAETKLQA_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2977905273438 2 602.296224 1202.5779 0.54357 0.00032739 0.25789 0.00015532 0.80146 0.00048271 602.2963769336499 34.286 0.38356 32.139 31.976 32.359 -2.1468 17 10 3 0 0 0 1.0721E-05 2 5997 5997;6044 150.22 94.985 1 1826500 1728 4024 903 905 2015;2016 2015 -0.015290062953681627 AENEAETKLQA 11 Unmodified _AENEAETKLQA_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.296875 2 602.296224 1202.5779 0.44648 0.00026891 0.17471 0.00010523 0.62119 0.00037414 602.2964300124439 34.355 0.31364 32.139 31.951 32.264 -2.2158 16 8 2 0 0 0 0.032121 1 5998 5998 128.87 81.275 1 1526900 1729 4024 903 905 2017 2017 -0.015290062953681627 AENEARSSMCY 11 Unmodified _AENEARSSMCY_ 0 0 0 REV__ENST00000373129.7_1_1:36826853-36833495:-|nuORF REV__ENST00000373129.7_1_1:36826853-36833495:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7523803710938 2 630.752812 1259.49107 NaN NaN NaN NaN NaN NaN NaN 27.853 1 27.853 27.353 28.353 0 0 0 0 0.23634 1 4928 4928 3.2813 0 1 + 1730 21040 904 906 2018 2018 -0.12829452113078332 AENEAVLLP 9 Unmodified _AENEAVLLP_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3;PLXNA3|p.H668Tfs*26|1|0.21|ENSG00000130827|chrX:154464823-154464823|C/-|frameshift_variant ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73846435546875 2 478.258382 954.502212 0.21147 0.00010114 -0.034603 -1.6549E-05 0.17687 8.459E-05 478.2582484156048 122.63 0.494 118.09 117.95 118.45 -4.5476 15 13 2 0 0 0 0.50308 1 24185 24185 38.176 5.3899 1 1205300 1731 3645 905 907 2019 2019 0.023140613150076206 AENEAVLLP 9 Unmodified _AENEAVLLP_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3;PLXNA3|p.H668Tfs*26|1|0.21|ENSG00000130827|chrX:154464823-154464823|C/-|frameshift_variant ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.258382 954.502212 0.30497 0.00014585 -0.49977 -0.00023902 -0.1948 -9.3166E-05 478.2580407700634 122.72 0.46154 118.15 117.93 118.39 -4.5734 0.032286 -0.00031076 NaN 38.176 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 697020 1732 3645 905 907 0.023140613150076206 AENEGLLVA 9 Unmodified _AENEGLLVA_ 0 0 0 ENST00000466110.5_1_2:74592577-74593714:-|nuORF;nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1 ENST00000466110.5_1_2:74592577-74593714:-|nuORF ENST00000466110.5_1_2:74592577-74593714:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2344055175781 2 458.242732 914.470912 0.056346 2.582E-05 0.15028 6.8867E-05 0.20663 9.4687E-05 458.24268388659175 92.095 1.156 92.095 91.627 92.783 0 62 32 3 0 0 0 0.036303 3 18008 18008;18010;18039 75.761 55.438 1 5110800 1733 7614 906 908 2020;2021;2022 2020 0.010254882809135779 AENEGLLVA 9 Unmodified _AENEGLLVA_ 0 0 0 ENST00000466110.5_1_2:74592577-74593714:-|nuORF;nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1 ENST00000466110.5_1_2:74592577-74593714:-|nuORF ENST00000466110.5_1_2:74592577-74593714:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2255554199219 2 458.242732 914.470912 -0.050696 -2.3231E-05 0.15706 7.1974E-05 0.10637 4.8743E-05 458.2427294345381 95.931 1.2375 91.882 91.479 92.717 -4.0496 73 35 3 0 0 0 0.036303 2 18829 18780;18829 74.216 62.466 1 7306200 1734 7614 906 908 2023;2024 2024 0.010254882809135779 AENEGLLVA 9 Unmodified _AENEGLLVA_ 0 0 0 ENST00000466110.5_1_2:74592577-74593714:-|nuORF;nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1 ENST00000466110.5_1_2:74592577-74593714:-|nuORF ENST00000466110.5_1_2:74592577-74593714:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2279052734375 2 458.242732 914.470912 0.064332 2.948E-05 0.095652 4.3832E-05 0.15998 7.3312E-05 458.2427144213807 96.209 1.3157 91.974 91.535 92.851 -4.2348 75 37 3 0 0 0 0.061384 2 18412 18358;18412 66.457 33.319 1 5732800 1735 7614 906 908 2025;2026 2026 0.010254882809135779 AENEGLLVA 9 Unmodified _AENEGLLVA_ 0 0 0 ENST00000466110.5_1_2:74592577-74593714:-|nuORF;nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1 ENST00000466110.5_1_2:74592577-74593714:-|nuORF ENST00000466110.5_1_2:74592577-74593714:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2295837402344 2 458.242732 914.470912 -0.029793 -1.3653E-05 0.15914 7.2924E-05 0.12934 5.9271E-05 458.2427614944362 95.916 1.447 92.035 91.579 93.026 -3.881 86 41 3 0 0 0 0.036303 2 18437 18437;18439 60.47 48.721 1 5856900 1736 7614 906 908 2027;2028 2027 0.010254882809135779 AENELGVVV 9 Unmodified _AENELGVVV_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2588806152344 2 465.250557 928.486562 0.13745 6.3951E-05 -0.515 -0.00023961 -0.37755 -0.00017566 465.2502096982489 111.29 0.729 111.29 110.96 111.69 0 35 20 2 0 0 0 0.19171 2 21939 21915;21939 38.176 15.421 1 2653900 1737 6137 907 909 2029;2030 2030 0.019457747979686246 AENELGVVV 9 Unmodified _AENELGVVV_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.250244140625 2 465.250557 928.486562 -0.031476 -1.4644E-05 -0.12596 -5.8605E-05 -0.15744 -7.3249E-05 465.2503688211382 115.64 1.3797 111.17 110.64 112.02 -4.4726 64 39 3 0 0 0 0.11828 2 22782 22782;22831 49.554 17.722 1 3965800 1738 6137 907 909 2031;2032 2031 0.019457747979686246 AENELGVVV 9 Unmodified _AENELGVVV_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2500915527344 2 465.250557 928.486562 0.21776 0.00010131 -0.43194 -0.00020096 -0.21418 -9.9648E-05 465.25024913868816 115.84 0.78941 111.26 110.8 111.59 -4.5815 40 22 2 0 0 0 0.19171 2 22194 22194;22240 38.176 11.292 1 3119500 1739 6137 907 909 2033;2034 2033 0.019457747979686246 AENELGVVV 9 Unmodified _AENELGVVV_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 930.4951782226562 1 929.493838 928.486562 0.64676 0.00060116 -0.16784 -0.000156 0.47892 0.00044515 929.4935665972013 115.61 0.59657 111.3 111.01 111.61 -4.3136 20 16 2 0 0 0 0.27986 1 22230 22230 32.786 11.039 1 1945700 1740 6137 907 909 2035 2035 0.019457747979686246 AENELGVVV 9 Unmodified _AENELGVVV_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2505798339844 2 465.250557 928.486562 0.51007 0.00023731 -0.86791 -0.0004038 -0.35784 -0.00016649 465.2500823807114 115.64 0.70482 111.31 110.89 111.59 -4.3279 35 19 2 0 0 0 0.25183 1 22288 22288 34.402 11.253 1 2289100 1741 6137 907 909 2036 2036 0.019457747979686246 AENELGVVV 9 Unmodified _AENELGVVV_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 929.493838 928.486562 0.17854 0.00016595 -0.21427 -0.00019916 -0.035728 -3.3209E-05 929.4934268659774 115.63 0.54958 111.16 110.91 111.46 -4.4726 -0.071534 -1.8135E-05 NaN 32.786 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2148300 1742 6137 907 909 0.019457747979686246 AENEPMEP 8 Unmodified _AENEPMEP_ 0 0 0 REV__nc|ENSG00000100206|Q14565-2|DMC1 REV__nc|ENSG00000100206|Q14565-2|DMC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2309875488281 2 458.689475 915.364398 -0.21402 -9.8169E-05 1.2569 0.00057651 1.0428 0.00047834 458.68998023475336 57.317 0.74217 54.422 54.063 54.806 -2.8944 34 20 2 0 0 0 8448 1 10934 10934 6.2058 4.8763 1 1178500 + 1743 14673 908 910 2037 2037 -0.09667010275916255 AENERLLCF 9 Unmodified _AENERLLCF_ 0 0 0 nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1;CDAN1|p.T563Pfs*29|1|0.16|ENSG00000140326|chr15:42731673-42731673|G/-|frameshift_variant nc|ENSG00000140326|Q8IWY9-1|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7678833007812 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 52.916 1 50.032 49.532 50.532 -2.8837 0 0 0 0.22251 1 10076 10076 16.942 4.4107 1 1744 4291 909 911 2038 2038 -0.020390912968423436 AENKDKPN 8 Unmodified _AENKDKPN_ 0 0 0 SPRTN|p.F417Lfs*11|1|0.36|ENSG00000010072|chr1:231353138-231353138|T/-|frameshift_variant;ENSG00000010072|ENST00000295050|SPRTN;SPRTN|p.A235T|1|0.19|ENSG00000010072|chr1:231351556-231351556|G/A|missense_variant SPRTN|p.F417Lfs*11|1|0.36|ENSG00000010072|chr1:231353138-231353138|T/-|frameshift_variant SPRTN|p.F417Lfs*11|1|0.36|ENSG00000010072|chr1:231353138-231353138|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.230224609375 2 458.230156 914.445759 -0.64671 -0.00029634 0.93979 0.00043064 0.29308 0.0001343 458.2305646554005 21.937 0.51357 20.216 20.019 20.533 -1.7211 23 14 2 0 0 0 8448 1 3486 3486 3.5871 0 1 1507100 1745 1059 910 912 2039 2039 -0.014885665216752386 AENKLDTKY 9 Unmodified _AENKLDTKY_ 0 0 0 ENST00000513383.5_1_4:183832630-183836685:-|nuORF;ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD ENST00000513383.5_1_4:183832630-183836685:-|nuORF ENST00000513383.5_1_4:183832630-183836685:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2804565429688 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 23.917 1 23.917 23.417 24.417 0 0 0 0 0.23508 1 4099 4099 10.824 0.75 1 1746 3558 911 913 2040 2040 0.008088313724101681 AENKLDTKY 9 Unmodified _AENKLDTKY_ 0 0 0 ENST00000513383.5_1_4:183832630-183836685:-|nuORF;ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD ENST00000513383.5_1_4:183832630-183836685:-|nuORF ENST00000513383.5_1_4:183832630-183836685:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2791748046875 2 541.279846 1080.54514 1.3821 0.00074812 -1.8492 -0.0010009 -0.4671 -0.00025283 541.279212395378 25.538 0.27813 23.89 23.722 24 -1.6482 11 7 2 0 0 0 0.6329 1 4469 4469 10.824 0.75 1 408510 1747 3558 911 913 2041 2041 0.008088313724101681 AENKTVVAP 9 Unmodified _AENKTVVAP_ 0 0 0 ENSG00000130309|ENST00000252599|COLGALT1 ENSG00000130309|ENST00000252599|COLGALT1 ENSG00000130309|ENST00000252599|COLGALT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2373046875 2 464.758549 927.502546 0.18271 8.4917E-05 -0.721 -0.00033509 -0.53829 -0.00025017 464.7582227466376 28.687 0.5273 28.687 28.387 28.914 0 25 14 2 0 0 0 0.76312 1 5083 5083 21.537 11.463 1 2266600 1748 3601 912 914 2042 2042 0.035894810348509054 AENLGKEHF 9 Unmodified _AENLGKEHF_ 0 0 0 ENST00000495539.5_1_10:114169305-114171667:+|nuORF;nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5 ENST00000495539.5_1_10:114169305-114171667:+|nuORF ENST00000495539.5_1_10:114169305-114171667:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2604370117188 2 522.759081 1043.50361 0.40475 0.00021159 -0.15793 -8.2557E-05 0.24682 0.00012903 522.7587696642266 71.216 0.91751 67.749 67.235 68.152 -3.467 56 25 3 0 0 0 0.10047 1 13507 13507 62.573 16.833 1 4711500 1749 7334 913 915 2043 2043 -0.016403045962533724 AENLGKEHF 9 Unmodified _AENLGKEHF_ 0 0 0 ENST00000495539.5_1_10:114169305-114171667:+|nuORF;nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5 ENST00000495539.5_1_10:114169305-114171667:+|nuORF ENST00000495539.5_1_10:114169305-114171667:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.759081 1043.50361 -0.32565 -0.00017023 0.41161 0.00021517 0.08596 4.4937E-05 522.7591281502131 70.983 0.88088 67.734 67.285 68.166 -3.2492 0.0087624 0.00017228 NaN 53.833 61 24 3 NaN NaN NaN NaN 0 NaN NaN 0 4955100 1750 7334 913 915 -0.016403045962533724 AENLGLDIVT 10 Unmodified _AENLGLDIVT_ 0 0 0 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.V3263Sfs*23|1|0.16|ENSG00000124721|chr6:38918047-38918048|-/A|frameshift_variant;DNAH8|p.V3263Sfs*28|1|0.47|ENSG00000124721|chr6:38918048-38918048|A/-|frameshift_variant;DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant;DNAH8|p.L1333Ffs*8|1|0.2|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant;DNAH8|p.N1473Kfs*8|1|0.3|ENSG00000124721|chr6:38848663-38848664|-/A|frameshift_variant;DNAH8|p.S1932Lfs*8|1|0.39|ENSG00000124721|chr6:38864002-38864002|T/-|frameshift_variant;DNAH8|p.S2184Lfs*8|1|0.39|ENSG00000124721|chr6:38872741-38872741|T/-|frameshift_variant;DNAH8|p.F2607Lfs*22|2|0.32|ENSG00000124721|chr6:38886999-38886999|T/-|frameshift_variant;DNAH8|p.F2835Lfs*10|1|0.14|ENSG00000124721|chr6:38899865-38899865|T/-|frameshift_variant;DNAH8|p.A853Lfs*9|1|0.12|ENSG00000124721|chr6:38807662-38807662|A/-|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2749633789062 2 522.782222 1043.54989 -0.29163 -0.00015246 -0.37568 -0.0001964 -0.66731 -0.00034886 522.782633617022 48.476 0.62605 45.607 45.345 45.971 -2.869 28 17 2 0 0 0 0.86856 1 9193 9193 11.495 2.1116 1 2566300 1751 867 914 916 2044 2044 0.029857155152058112 AENLMCWGTGY 11 Unmodified _AENLMCWGTGY_ 0 0 0 ADAM30|p.M595*|1|0.06|ENSG00000134249|chr1:119894535-119894554|GGTATTCCCATGGGTTTCAT/-|frameshift_variant;nc|ENSG00000134249|Q9UKF2-2|ADAM30;ENSG00000134249|ENST00000369400|ADAM30 ADAM30|p.M595*|1|0.06|ENSG00000134249|chr1:119894535-119894554|GGTATTCCCATGGGTTTCAT/-|frameshift_variant ADAM30|p.M595*|1|0.06|ENSG00000134249|chr1:119894535-119894554|GGTATTCCCATGGGTTTCAT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7572631835938 2 622.757366 1243.50018 NaN NaN NaN NaN NaN NaN NaN 53.621 1 50.737 50.237 51.237 -2.8837 0 0 0 0.23634 1 10215 10215 3.2813 0 1 1752 56 915 917 2045 2045 -0.11183058756751052 AENLMCWGTGY 11 Unmodified _AENLMCWGTGY_ 0 0 0 ADAM30|p.M595*|1|0.06|ENSG00000134249|chr1:119894535-119894554|GGTATTCCCATGGGTTTCAT/-|frameshift_variant;nc|ENSG00000134249|Q9UKF2-2|ADAM30;ENSG00000134249|ENST00000369400|ADAM30 ADAM30|p.M595*|1|0.06|ENSG00000134249|chr1:119894535-119894554|GGTATTCCCATGGGTTTCAT/-|frameshift_variant ADAM30|p.M595*|1|0.06|ENSG00000134249|chr1:119894535-119894554|GGTATTCCCATGGGTTTCAT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7566528320312 2 622.757366 1243.50018 NaN NaN NaN NaN NaN NaN NaN 63.067 1 59.811 59.311 60.311 -3.2567 0 0 0 0.23324 1 11833 11833 5.7319 2.4505 1 1753 56 915 917 2046 2046 -0.11183058756751052 AENLQWGKP 9 Unmodified _AENLQWGKP_ 0 0 0 ENST00000443387.2_1_19:36727320-36727398:+|nuORF ENST00000443387.2_1_19:36727320-36727398:+|nuORF ENST00000443387.2_1_19:36727320-36727398:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.270751953125 2 521.769448 1041.52434 0.018118 9.4532E-06 -0.44103 -0.00023012 -0.42291 -0.00022066 521.769200241457 70.613 1.3677 70.613 69.672 71.039 0 79 38 3 0 0 0 0.010502 3 13700 13609;13698;13700 103.42 67.292 1 12633000 1754 9912 916 918 2047;2048;2049 2049 0.005242857834218739 AENLQWGKP 9 Unmodified _AENLQWGKP_ 0 0 0 ENST00000443387.2_1_19:36727320-36727398:+|nuORF ENST00000443387.2_1_19:36727320-36727398:+|nuORF ENST00000443387.2_1_19:36727320-36727398:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2708740234375 2 521.769448 1041.52434 -0.3085 -0.00016096 0.98278 0.00051278 0.67428 0.00035182 521.769434339285 74.069 1.0809 70.705 70.191 71.272 -3.3643 110 30 6 0 0 0 4.8487E-06 5 14454 14381;14402;14454;14496;14538 140.63 84.456 1 19575000 1755 9912 916 918 2050;2051;2052;2053;2054 2052 0.005242857834218739 AENLQWGKP 9 Unmodified _AENLQWGKP_ 0 0 0 ENST00000443387.2_1_19:36727320-36727398:+|nuORF ENST00000443387.2_1_19:36727320-36727398:+|nuORF ENST00000443387.2_1_19:36727320-36727398:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2706298828125 2 521.769448 1041.52434 -0.53341 -0.00027831 0.14544 7.5888E-05 -0.38796 -0.00020243 521.7694897473333 74.228 1.0334 70.551 70.14 71.174 -3.6764 75 29 3 0 0 0 6.9608E-05 3 14013 14013;14052;14091 128.93 72.755 1 14849000 1756 9912 916 918 2055;2056;2057 2055 0.005242857834218739 AENLQWGKP 9 Unmodified _AENLQWGKP_ 0 0 0 ENST00000443387.2_1_19:36727320-36727398:+|nuORF ENST00000443387.2_1_19:36727320-36727398:+|nuORF ENST00000443387.2_1_19:36727320-36727398:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2708129882812 2 521.769448 1041.52434 0.41528 0.00021668 0.025837 1.3481E-05 0.44112 0.00023016 521.768962626223 74.185 1.3708 70.591 69.758 71.129 -3.594 122 38 5 0 0 0 0.0024928 5 14119 14066;14116;14119;14165;14169 117.76 67.292 1 14903000 1757 9912 916 918 2058;2059;2060;2061;2062 2060 0.005242857834218739 AENNVFHLV 9 Unmodified _AENNVFHLV_ 0 0 0 ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000561933.1_1_16:68344571-68344829:-|nuORF ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2822265625 2 521.769448 1041.52434 0.20422 0.00010656 0.48464 0.00025287 0.68886 0.00035942 521.7697779373902 127.36 0.62688 127.36 127.06 127.68 0 30 17 2 0 0 0 0.00016281 6 25176 25110;25113;25127;25158;25161;25176 122.18 84.205 1 4990400 1758 2161 917 919 2063;2064;2065;2066;2067;2068 2068 0.005242857833991366 AENNVFHLV 9 Unmodified _AENNVFHLV_ 0 0 0 ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000561933.1_1_16:68344571-68344829:-|nuORF ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2713012695312 2 521.769448 1041.52434 -0.2498 -0.00013034 0.72803 0.00037987 0.47824 0.00024953 521.7698560875629 131.55 0.77309 126.92 126.57 127.35 -4.6359 49 21 3 0 0 0 1.4304E-05 5 25934 25890;25934;25979;25980;25995 137.42 95.584 1 5344400 1759 2161 917 919 2069;2070;2071;2072;2073 2070 0.005242857833991366 AENNVFHLV 9 Unmodified _AENNVFHLV_ 0 0 0 ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000561933.1_1_16:68344571-68344829:-|nuORF ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2713623046875 2 521.769448 1041.52434 -0.68006 -0.00035483 1.0215 0.00053296 0.3414 0.00017813 521.7700309380987 131.77 0.75473 126.92 126.53 127.28 -4.8528 45 21 3 0 0 0 0.00016281 5 25301 25251;25297;25301;25343;25345 122.18 84.205 1 5771300 1760 2161 917 919 2074;2075;2076;2077;2078 2076 0.005242857833991366 AENNVFHLV 9 Unmodified _AENNVFHLV_ 0 0 0 ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000561933.1_1_16:68344571-68344829:-|nuORF ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2600708007812 2 521.769448 1041.52434 0.23826 0.00012432 0.086092 4.492E-05 0.32435 0.00016924 521.7696147772583 131.79 0.92145 126.99 126.47 127.39 -4.799 58 25 3 0 0 0 2.3519E-05 5 25376 25338;25339;25376;25383;25426 134.3 96.322 1 4674000 1761 2161 917 919 2079;2080;2081;2082;2083 2081 0.005242857833991366 AENPFLTHL 9 Unmodified _AENPFLTHL_ 0 0 0 ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD ENSG00000163932|ENST00000330452|PRKCD ENSG00000163932|ENST00000330452|PRKCD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 521.1405029296875 2 521.271824 1040.5291 0.20961 0.00010926 -2.1441 -0.0011176 -1.9345 -0.0010084 521.7714504720107 137.33 0.34726 137.33 137.13 137.48 0 11 9 2 0 0 0 0.84208 1 27215 27215 11.64 9.9877 1 2331800 1762 5483 918 920 2084 2084 0.010451699261693648 AENPSPRSP 9 Unmodified _AENPSPRSP_ 0 0 0 ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7385559082031 2 477.735606 953.456658 -0.1703 -8.136E-05 0.23818 0.00011379 0.067874 3.2426E-05 477.73555720422166 16.561 0.8305 16.561 16.129 16.96 0 50 23 3 0 0 0 0.58077 1 2594 2594 14.405 5.0223 1 1544600 1763 4494 919 921 2085 2085 -0.021931641473884156 AENPSPRSP 9 Unmodified _AENPSPRSP_ 0 0 0 ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.735606 953.456658 -0.1651 -7.8874E-05 -0.17446 -8.3347E-05 -0.33956 -0.00016222 477.73546119450174 17.844 0.83623 16.533 15.995 16.831 -1.3109 0.005143 -0.00025081 NaN 14.405 42 23 2 NaN NaN NaN NaN 0 NaN NaN 0 985610 1764 4494 919 921 -0.021931641473884156 AENPSPRSP 9 Unmodified _AENPSPRSP_ 0 0 0 ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.735606 953.456658 -0.43654 -0.00020855 0.16884 8.0663E-05 -0.26769 -0.00012789 477.73556888286186 17.762 0.65362 16.489 16.144 16.798 -1.2722 -0.038481 7.7208E-05 NaN 14.405 34 18 2 NaN NaN NaN NaN 0 NaN NaN 0 749730 1765 4494 919 921 -0.021931641473884156 AENQGFVAA 9 Unmodified _AENQGFVAA_ 0 0 0 ENSG00000254470|ENST00000532090|AP5B1;ENST00000316846.2_11:65545618-65547282:-|nuORF ENSG00000254470|ENST00000532090|AP5B1 ENSG00000254470|ENST00000532090|AP5B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7470703125 2 453.719424 905.424296 0.39829 0.00018071 0.8137 0.00036919 1.212 0.00054991 453.7199606653198 51.122 1.3101 51.122 50.13 51.441 0 68 37 3 0 0 0 0.19171 1 9704 9704 38.176 15.439 1 8043600 1766 7925 920 922 2086 2086 -0.03219951550386213 AENQGFVAA 9 Unmodified _AENQGFVAA_ 0 0 0 ENSG00000254470|ENST00000532090|AP5B1;ENST00000316846.2_11:65545618-65547282:-|nuORF ENSG00000254470|ENST00000532090|AP5B1 ENSG00000254470|ENST00000532090|AP5B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.74725341796875 2 453.719424 905.424296 -0.33402 -0.00015155 0.64831 0.00029415 0.31429 0.0001426 453.7197092105028 53.904 0.83878 51.021 50.486 51.324 -2.8837 59 23 4 0 0 0 0.27865 1 10257 10257 41.84 19.103 1 17916000 1767 7925 920 922 2087 2087 -0.03219951550386213 AENQGFVAA 9 Unmodified _AENQGFVAA_ 0 0 0 ENSG00000254470|ENST00000532090|AP5B1;ENST00000316846.2_11:65545618-65547282:-|nuORF ENSG00000254470|ENST00000532090|AP5B1 ENSG00000254470|ENST00000532090|AP5B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.74737548828125 2 453.719424 905.424296 0.0065238 2.96E-06 0.53783 0.00024402 0.54436 0.00024698 453.71970049811887 54.116 0.97436 50.981 50.309 51.283 -3.1352 45 27 2 0 0 0 0.31673 1 9926 9926 47.749 5.9091 1 14945000 1768 7925 920 922 2088 2088 -0.03219951550386213 AENQGFVAA 9 Unmodified _AENQGFVAA_ 0 0 0 ENSG00000254470|ENST00000532090|AP5B1;ENST00000316846.2_11:65545618-65547282:-|nuORF ENSG00000254470|ENST00000532090|AP5B1 ENSG00000254470|ENST00000532090|AP5B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7518615722656 2 453.719424 905.424296 -0.080986 -3.6745E-05 0.47025 0.00021336 0.38926 0.00017662 453.719645907701 54.141 0.73674 51.004 50.501 51.238 -3.1377 39 20 2 0 0 0 0.10573 1 10039 10039 53.833 21.047 1 14099000 1769 7925 920 922 2089 2089 -0.03219951550386213 AENRGAVVV 9 Unmodified _AENRGAVVV_ 0 0 0 nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant;TANC1|p.E735Lfs*10|1|0.14|ENSG00000115183|chr2:159178846-159178847|-/TC|frameshift_variant nc|ENSG00000115183|Q9C0D5-2|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23822021484375 2 457.756341 913.498129 0.26123 0.00011958 0.0068543 3.1376E-06 0.26808 0.00012272 457.7562966407331 34.729 0.7537 34.729 34.346 35.099 0 65 21 4 0 0 0 0.34246 1 6326 6326 47.594 29.448 1 13427000 1770 2826 921 923 2090 2090 0.03792016611953386 AENRGAVVV 9 Unmodified _AENRGAVVV_ 0 0 0 nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant;TANC1|p.E735Lfs*10|1|0.14|ENSG00000115183|chr2:159178846-159178847|-/TC|frameshift_variant nc|ENSG00000115183|Q9C0D5-2|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2242736816406 2 457.756341 913.498129 -0.50861 -0.00023282 0.714 0.00032684 0.20539 9.402E-05 457.75664420630125 36.817 0.75839 34.348 34.014 34.772 -2.4688 63 21 4 0 0 0 0.6202 1 6834 6834 33.445 16.503 1 23628000 1771 2826 921 923 2091 2091 0.03792016611953386 AENRGAVVV 9 Unmodified _AENRGAVVV_ 0 0 0 nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant;TANC1|p.E735Lfs*10|1|0.14|ENSG00000115183|chr2:159178846-159178847|-/TC|frameshift_variant nc|ENSG00000115183|Q9C0D5-2|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22454833984375 2 457.756341 913.498129 0.2509 0.00011485 -0.036092 -1.6521E-05 0.21481 9.8331E-05 457.7562643103333 36.732 0.88447 34.395 34.061 34.946 -2.3375 68 24 4 0 0 0 0.065291 1 6487 6487 72.968 29.11 1 13585000 1772 2826 921 923 2092 2092 0.03792016611953386 AENRPAVKA 9 Unmodified _AENRPAVKA_ 0 0 0 nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811775-67815272:+|nuORF nc|ENSG00000110719|Q13488-2|TCIRG1 nc|ENSG00000110719|Q13488-2|TCIRG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7218322753906 2 478.269616 954.524678 -0.1805 -8.6328E-05 0.14084 6.7359E-05 -0.039662 -1.8969E-05 478.2696537987958 15.145 0.31305 15.145 14.948 15.261 0 17 8 3 0 0 0 0.41266 1 2308 2308 24.991 13.351 1 3773500 1773 2584 922 924 2093 2093 0.04559705503265832 AENRPAVKA 9 Unmodified _AENRPAVKA_ 0 0 0 nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811775-67815272:+|nuORF nc|ENSG00000110719|Q13488-2|TCIRG1 nc|ENSG00000110719|Q13488-2|TCIRG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.269616 954.524678 -0.44562 -0.00021313 0.57441 0.00027472 0.12879 6.1596E-05 478.26983344308525 16.109 0.24936 14.894 14.797 15.046 -1.2159 -0.10669 9.3286E-05 NaN 24.991 18 6 4 NaN NaN NaN NaN 0 NaN NaN 0 3551200 1774 2584 922 924 0.04559705503265832 AENRPAVKA 9 Unmodified _AENRPAVKA_ 0 0 0 nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811775-67815272:+|nuORF nc|ENSG00000110719|Q13488-2|TCIRG1 nc|ENSG00000110719|Q13488-2|TCIRG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.269616 954.524678 -0.53339 -0.0002551 0.70284 0.00033615 0.16945 8.1045E-05 478.26990122996244 16.185 0.23957 14.963 14.819 15.058 -1.2219 -0.037603 0.00021613 NaN 24.991 15 6 3 NaN NaN NaN NaN 0 NaN NaN 0 2299500 1775 2584 922 924 0.04559705503265832 AENSLLQAA 9 Unmodified _AENSLLQAA_ 0 0 0 nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA nc|ENSG00000115970|Q6YHU6-2|THADA nc|ENSG00000115970|Q6YHU6-2|THADA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2381286621094 2 458.740357 915.46616 0.64571 0.00029621 -0.73871 -0.00033888 -0.093002 -4.2664E-05 458.74003886133926 80.264 0.65691 80.264 79.899 80.556 0 27 18 2 0 0 0 0.27865 1 15655 15655 49.933 13.806 1 2409500 1776 2897 923 925 2094 2094 0.005046041381433497 AENSLLQAA 9 Unmodified _AENSLLQAA_ 0 0 0 nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA nc|ENSG00000115970|Q6YHU6-2|THADA nc|ENSG00000115970|Q6YHU6-2|THADA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2377014160156 2 458.740357 915.46616 -0.11239 -5.1559E-05 -0.014515 -6.6587E-06 -0.12691 -5.8218E-05 458.7405067367313 83.608 0.63193 80 79.691 80.323 -3.6079 27 17 2 0 0 0 0.14967 1 16327 16327 49.933 20.851 1 1929200 1777 2897 923 925 2095 2095 0.005046041381433497 AENSLLQAA 9 Unmodified _AENSLLQAA_ 0 0 0 nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA nc|ENSG00000115970|Q6YHU6-2|THADA nc|ENSG00000115970|Q6YHU6-2|THADA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23828125 2 458.740357 915.46616 0.097299 4.4635E-05 0.06305 2.8924E-05 0.16035 7.3559E-05 458.74051489660593 84.096 0.59947 80.186 79.79 80.389 -3.9093 28 16 2 0 0 0 0.075749 1 15962 15962 78.728 13.493 1 1910600 1778 2897 923 925 2096 2096 0.005046041381433497 AENSLLQAA 9 Unmodified _AENSLLQAA_ 0 0 0 nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA nc|ENSG00000115970|Q6YHU6-2|THADA nc|ENSG00000115970|Q6YHU6-2|THADA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23822021484375 2 458.740357 915.46616 -0.052758 -2.4202E-05 0.44151 0.00020254 0.38875 0.00017834 458.74056714139607 83.836 0.7083 80.138 79.899 80.607 -3.6985 33 19 2 0 0 0 0.12542 1 16041 16041 56.177 25.541 1 1642900 1779 2897 923 925 2097 2097 0.005046041381433497 AENSLVAYKA 10 Unmodified _AENSLVAYKA_ 0 0 0 nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000108953|ENST00000264335|YWHAE nc|ENSG00000108953|P62258-2|YWHAE nc|ENSG00000108953|P62258-2|YWHAE MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2825927734375 2 533.282389 1064.55022 -0.20034 -0.00010684 0.87203 0.00046504 0.67169 0.0003582 533.2827554338344 59.194 0.53768 59.194 59.004 59.541 0 25 14 2 0 0 0 0.20669 1 11370 11370 43.982 15.487 1 1800400 1780 2507 924 926 2098 2098 0.020531352350417365 AENSLVAYKA 10 Unmodified _AENSLVAYKA_ 0 0 0 nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000108953|ENST00000264335|YWHAE nc|ENSG00000108953|P62258-2|YWHAE nc|ENSG00000108953|P62258-2|YWHAE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2811889648438 2 533.282389 1064.55022 0.13458 7.1772E-05 0.13513 7.2063E-05 0.26972 0.00014383 533.2825086619089 62.122 0.45444 59.161 58.937 59.392 -2.9614 27 12 3 0 0 0 0.075059 3 11960 11957;11960;12014 71.708 40.44 1 2346200 1781 2507 924 926 2099;2100;2101 2100 0.020531352350417365 AENSLVAYKA 10 Unmodified _AENSLVAYKA_ 0 0 0 nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000108953|ENST00000264335|YWHAE nc|ENSG00000108953|P62258-2|YWHAE nc|ENSG00000108953|P62258-2|YWHAE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2702026367188 2 533.282389 1064.55022 0.51412 0.00027417 -0.37529 -0.00020013 0.13883 7.4036E-05 533.2822374500761 62.62 0.5215 59.204 58.875 59.397 -3.4158 28 14 3 0 0 0 0.075059 5 11687 11644;11655;11685;11687;11708 71.708 37.605 1 2164700 1782 2507 924 926 2102;2103;2104;2105;2106 2105 0.020531352350417365 AENSLVAYKA 10 Unmodified _AENSLVAYKA_ 0 0 0 nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000108953|ENST00000264335|YWHAE nc|ENSG00000108953|P62258-2|YWHAE nc|ENSG00000108953|P62258-2|YWHAE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2823486328125 2 533.282389 1064.55022 0.27438 0.00014632 0.22052 0.0001176 0.4949 0.00026392 533.2823861600656 62.4 0.59497 59.16 58.894 59.488 -3.2395 27 16 2 0 0 0 0.10181 2 11679 11679;11728 59.368 31.74 1 1309700 1783 2507 924 926 2107;2108 2107 0.020531352350417365 AENVDKEVRKW 11 Unmodified _AENVDKEVRKW_ 0 0 0 REV__FUNDC1|p.K108E|1|0.45|ENSG00000069509|chrX:44527305-44527305|T/C|missense_variant REV__FUNDC1|p.K108E|1|0.45|ENSG00000069509|chrX:44527305-44527305|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23516845703125 3 458.577247 1372.70991 0.07323 3.3582E-05 -0.28525 -0.00013081 -0.21202 -9.7227E-05 458.57726190136907 40.823 0.41999 38.334 38.145 38.565 -2.4896 16 11 2 0 0 0 0.77537 1 7357 7357 6.6235 0 1 479700 + 1784 23554 925 927 2109 2109 0.03846643512201808 AENVLKNYL 9 Unmodified _AENVLKNYL_ 0 0 0 REV__ENST00000482997.5_1_2:152982712-153032156:-|nuORF REV__ENST00000482997.5_1_2:152982712-153032156:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.28662109375 2 532.292756 1062.57096 0.09801 5.217E-05 -0.010187 -5.4224E-06 0.087823 4.6748E-05 532.2926956371039 115.78 0.61975 111.29 110.97 111.59 -4.4856 36 17 3 0 0 0 0.60805 1 22869 22869 12.532 0 1 2891000 + 1785 15404 926 928 2110 2110 0.042177256146942455 AENYHAKLWLQ 11 Unmodified _AENYHAKLWLQ_ 0 0 0 REV__SIX2|p.I93N|1|0.36|ENSG00000170577|chr2:45008833-45008833|A/T|missense_variant REV__SIX2|p.I93N|1|0.36|ENSG00000170577|chr2:45008833-45008833|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2248840332031 3 458.238455 1371.69353 NaN NaN NaN NaN NaN NaN NaN 62.668 1 59.707 59.207 60.207 -2.9614 0 0 0 0.22745 1 12094 12094 10.315 5.5993 1 + 1786 24620 927 929 2111 2111 0.022555623461357754 AENYHNIW 8 Unmodified _AENYHNIW_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;RYR3|p.N4580Mfs*8|1|0.37|ENSG00000198838|chr15:33853618-33853618|A/-|frameshift_variant;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.E3943Rfs*18|1|0.12|ENSG00000198838|chr15:33837800-33837801|-/A|frameshift_variant;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6964111328125 2 523.738148 1045.46174 NaN NaN NaN NaN NaN NaN NaN 76.813 1 76.813 76.313 77.313 0 0 0 0 0.23487 1 14926 14926 0.62683 0.21856 1 1787 7505;7465 928 930 2112 2112 -0.0591686028476488 AENYKRKF 8 Unmodified _AENYKRKF_ 0 0 0 REV__tr|U7T6E4|U7T6E4_FUSNUSmrdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00193PE=4SV=1 REV__tr|U7T6E4|U7T6E4_FUSNUSmrdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00193PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.1764221191406 3 352.525936 1054.55598 -0.36274 -0.00012788 1.0613 0.00037413 0.69853 0.00024625 352.52602926810926 72.004 1.0545 72.004 71.316 72.371 0 44 29 3 0 0 0 1.0276 1 13842 13842 0 0 1 2095600 + 1788 25444 929 931 2113 2113 0.0308827853737057 AENYKRKF 8 Unmodified _AENYKRKF_ 0 0 0 REV__tr|U7T6E4|U7T6E4_FUSNUSmrdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00193PE=4SV=1 REV__tr|U7T6E4|U7T6E4_FUSNUSmrdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00193PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 352.525936 1054.55598 -0.33182 -0.00011698 0.90953 0.00032063 0.5777 0.00020365 352.5261119035908 75.415 0.43825 72 71.716 72.154 -3.4151 0.0076455 0.00043477 NaN 0 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2117700 + 1789 25444 929 931 0.0308827853737057 AENYKRKF 8 Unmodified _AENYKRKF_ 0 0 0 REV__tr|U7T6E4|U7T6E4_FUSNUSmrdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00193PE=4SV=1 REV__tr|U7T6E4|U7T6E4_FUSNUSmrdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00193PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 352.525936 1054.55598 0.12642 4.4567E-05 -0.041943 -1.4786E-05 0.084479 2.9781E-05 352.52589510053804 75.66 0.55522 71.937 71.579 72.135 -3.7227 -0.055461 -0.00057148 NaN 0 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 893600 + 1790 25444 929 931 0.0308827853737057 AENYKRKF 8 Unmodified _AENYKRKF_ 0 0 0 REV__tr|U7T6E4|U7T6E4_FUSNUSmrdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00193PE=4SV=1 REV__tr|U7T6E4|U7T6E4_FUSNUSmrdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00193PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 352.525936 1054.55598 -0.43513 -0.0001534 0.66781 0.00023542 0.23268 8.2025E-05 352.8605160388868 75.663 0.42121 72.029 71.679 72.1 -3.6337 0.036295 0.00017914 NaN 0 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1236600 + 1791 25444 929 931 0.0308827853737057 AEPAGPHL 8 Unmodified _AEPAGPHL_ 0 0 0 ARC|p.P371S|1|0.17|ENSG00000198576|chr8:142613161-142613161|G/A|missense_variant;ENSG00000198576|ENST00000356613|ARC ARC|p.P371S|1|0.17|ENSG00000198576|chr8:142613161-142613161|G/A|missense_variant ARC|p.P371S|1|0.17|ENSG00000198576|chr8:142613161-142613161|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 395.8811340332031 2 396.205953 790.397353 -0.61947 -0.00024544 0.50345 0.00019947 -0.11602 -4.5967E-05 396.2061436614434 43.652 0.52234 40.905 40.625 41.147 -2.7475 26 14 3 0 0 0 0.88214 1 7906 7906 3.5871 2.9602 1 666830 1792 194 930 932 2114 2114 -0.006230153708997932 AEPAGPHL 8 Unmodified _AEPAGPHL_ 0 0 0 ARC|p.P371S|1|0.17|ENSG00000198576|chr8:142613161-142613161|G/A|missense_variant;ENSG00000198576|ENST00000356613|ARC ARC|p.P371S|1|0.17|ENSG00000198576|chr8:142613161-142613161|G/A|missense_variant ARC|p.P371S|1|0.17|ENSG00000198576|chr8:142613161-142613161|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 396.205953 790.397353 -0.27361 -0.00010841 0.28811 0.00011415 0.014502 5.7458E-06 396.20596477171165 43.747 0.66107 40.957 40.559 41.22 -2.79 0.023063 5.4142E-05 NaN 3.5871 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 760940 1793 194 930 932 -0.006230153708997932 AEPAGPHL 8 Unmodified _AEPAGPHL_ 0 0 0 ARC|p.P371S|1|0.17|ENSG00000198576|chr8:142613161-142613161|G/A|missense_variant;ENSG00000198576|ENST00000356613|ARC ARC|p.P371S|1|0.17|ENSG00000198576|chr8:142613161-142613161|G/A|missense_variant ARC|p.P371S|1|0.17|ENSG00000198576|chr8:142613161-142613161|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 396.205953 790.397353 -0.053449 -2.1177E-05 -0.28766 -0.00011397 -0.34111 -0.00013515 396.2057464591476 43.705 0.64447 40.939 40.541 41.185 -2.7661 0.0056162 -0.00040211 NaN 3.5871 29 17 3 NaN NaN NaN NaN 0 NaN NaN 0 858570 1794 194 930 932 -0.006230153708997932 AEPAPFNK 8 Unmodified _AEPAPFNK_ 0 0 0 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2193908691406 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 43.703 1 40.913 40.413 41.413 -2.79 0 0 0 0.21486 1 8196 8196 8.5933 2.2392 1 1795 7813 931 933 2115 2115 -0.0021045968237558554 AEPCRGLQ 8 Unmodified _AEPCRGLQ_ 0 0 0 ENSG00000187122|ENST00000266058|SLIT1;SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant ENSG00000187122|ENST00000266058|SLIT1 ENSG00000187122|ENST00000266058|SLIT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.216064453125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 103.48 1 103.48 102.98 103.98 0 0 0 0 0.21039 1 20334 20334 16.942 3.4344 1 1796 7097 932 934 2116 2116 -0.023875877025943737 AEPCRGLQ 8 Unmodified _AEPCRGLQ_ 0 0 0 ENSG00000187122|ENST00000266058|SLIT1;SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant ENSG00000187122|ENST00000266058|SLIT1 ENSG00000187122|ENST00000266058|SLIT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22802734375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 103.55 1 103.55 103.05 104.05 0 0 0 0 0.21452 1 20350 20350 13.508 0 1 1797 7097 932 934 2117 2117 -0.023875877025943737 AEPCRGLQ 8 Unmodified _AEPCRGLQ_ 0 0 0 ENSG00000187122|ENST00000266058|SLIT1;SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant ENSG00000187122|ENST00000266058|SLIT1 ENSG00000187122|ENST00000266058|SLIT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22784423828125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 103.81 1 103.81 103.31 104.31 0 0 0 0 0.23487 1 20402 20402 0.68139 0 1 1798 7097 932 934 2118 2118 -0.023875877025943737 AEPCRGLQ 8 Unmodified _AEPCRGLQ_ 0 0 0 ENSG00000187122|ENST00000266058|SLIT1;SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant ENSG00000187122|ENST00000266058|SLIT1 ENSG00000187122|ENST00000266058|SLIT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2163391113281 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 108.01 1 103.69 103.19 104.19 -4.32 0 0 0 0.21452 1 21277 21277 13.508 0 1 1799 7097 932 934 2119 2119 -0.023875877025943737 AEPCRGLQ 8 Unmodified _AEPCRGLQ_ 0 0 0 ENSG00000187122|ENST00000266058|SLIT1;SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant ENSG00000187122|ENST00000266058|SLIT1 ENSG00000187122|ENST00000266058|SLIT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2176208496094 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 107.67 1 103.54 103.04 104.04 -4.135 0 0 0 0.21039 1 20711 20711 16.942 3.4344 1 1800 7097 932 934 2120 2120 -0.023875877025943737 AEPDDTYHV 9 Unmodified _AEPDDTYHV_ 0 0 0 REV__SLC39A9|p.S132Y|1|0.23|ENSG00000029364|chr14:69442258-69442258|C/A|missense_variant REV__SLC39A9|p.S132Y|1|0.23|ENSG00000029364|chr14:69442258-69442258|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7008666992188 2 523.724904 1045.43525 NaN NaN NaN NaN NaN NaN NaN 42.004 1 39.285 38.785 39.785 -2.7191 0 0 0 0.23508 1 7850 7850 10.824 3.5347 1 + 1801 24643 933 935 2121 2121 -0.08564593966752909 AEPDFIFRA 9 Unmodified _AEPDFIFRA_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2720336914062 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 134.16 1 134.16 133.66 134.66 0 0 0 0 0.19687 1 26552 26552 14.957 14.75 1 1802 5723 934 936 2122 2122 -0.0005883007379452465 AEPDFIFRA 9 Unmodified _AEPDFIFRA_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2720336914062 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 134.18 1 134.18 133.68 134.68 0 0 0 0 0.22193 1 26556 26556 17.113 5.4726 1 1803 5723 934 936 2123 2123 -0.0005883007379452465 AEPDFIFRA 9 Unmodified _AEPDFIFRA_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.283447265625 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 134.39 1 134.39 133.89 134.89 0 0 0 0 0.22193 1 26602 26602 17.113 2.5312 1 1804 5723 934 936 2124 2124 -0.0005883007379452465 AEPDFIFRA 9 Unmodified _AEPDFIFRA_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2708129882812 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 134.41 1 134.41 133.91 134.91 0 0 0 0 0.18489 1 26607 26607 30.703 30.187 1 1805 5723 934 936 2125 2125 -0.0005883007379452465 AEPDFIFRA 9 Unmodified _AEPDFIFRA_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2708129882812 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 134.43 1 134.43 133.93 134.93 0 0 0 0 0.22193 1 26610 26610 17.113 7.039 1 1806 5723 934 936 2126 2126 -0.0005883007379452465 AEPDFIFRA 9 Unmodified _AEPDFIFRA_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2611694335938 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 138.62 1 133.98 133.48 134.48 -4.642 0 0 0 0.22193 1 27370 27370 17.113 3.605 1 1807 5723 934 936 2127 2127 -0.0005883007379452465 AEPDFIFRA 9 Unmodified _AEPDFIFRA_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.272216796875 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 138.8 1 134.16 133.66 134.66 -4.6439 0 0 0 0.18489 1 27407 27407 30.703 29.489 1 1808 5723 934 936 2128 2128 -0.0005883007379452465 AEPDFIFRA 9 Unmodified _AEPDFIFRA_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2850952148438 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 139.23 1 134.28 133.78 134.78 -4.952 0 0 0 0.20699 1 26783 26783 21.537 0 1 1809 5723 934 936 2129 2129 -0.0005883007379452465 AEPDFIFRA 9 Unmodified _AEPDFIFRA_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2637329101562 2 533.271824 1064.5291 0.30589 0.00016312 2.2674 0.0012091 2.5733 0.0013723 533.774965809177 138.94 0.28601 134.09 133.97 134.25 -4.8492 9 7 2 0 0 0 0.60061 1 26779 26779 13.042 1.4022 1 1338900 1810 5723 934 936 2130 2130 -0.0005883007379452465 AEPDFIFRA 9 Unmodified _AEPDFIFRA_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2727661132812 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 139.23 1 134.39 133.89 134.89 -4.8492 0 0 0 0.19687 1 26839 26839 8.1555 3.2585 1 1811 5723 934 936 2131 2131 -0.0005883007379452465 AEPDNLARA 9 Unmodified _AEPDNLARA_ 0 0 0 ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant;ASXL1|p.G1376Vfs*74|1|0.09|ENSG00000171456|chr20:32436834-32436834|G/-|frameshift_variant;ENSG00000171456|ENST00000375687|ASXL1;ASXL1|p.E705Sfs*20|1|0.46|ENSG00000171456|chr20:32434822-32434822|G/-|frameshift_variant ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7431640625 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 30.148 1 30.148 29.648 30.648 0 0 0 0 0.20699 1 5412 5412 21.537 3.3906 1 1812 243 935 937 2132 2132 -0.007208776303400555 AEPDNLARA 9 Unmodified _AEPDNLARA_ 0 0 0 ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant;ASXL1|p.G1376Vfs*74|1|0.09|ENSG00000171456|chr20:32436834-32436834|G/-|frameshift_variant;ENSG00000171456|ENST00000375687|ASXL1;ASXL1|p.E705Sfs*20|1|0.46|ENSG00000171456|chr20:32434822-32434822|G/-|frameshift_variant ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7423400878906 2 478.743431 955.472308 0.22229 0.00010642 0.84048 0.00040237 1.0628 0.00050879 478.743605231299 32.148 0.31744 29.918 29.691 30.008 -2.2305 10 8 2 0 0 0 0.54076 1 5838 5838 17.113 3.498 1 313840 1813 243 935 937 2133 2133 -0.007208776303400555 AEPDNLARA 9 Unmodified _AEPDNLARA_ 0 0 0 ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant;ASXL1|p.G1376Vfs*74|1|0.09|ENSG00000171456|chr20:32436834-32436834|G/-|frameshift_variant;ENSG00000171456|ENST00000375687|ASXL1;ASXL1|p.E705Sfs*20|1|0.46|ENSG00000171456|chr20:32434822-32434822|G/-|frameshift_variant ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74359130859375 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 31.944 1 29.918 29.418 30.418 -2.0264 0 0 0 0.17061 1 5528 5528 27.629 8.3718 1 1814 243 935 937 2134 2134 -0.007208776303400555 AEPDNLARA 9 Unmodified _AEPDNLARA_ 0 0 0 ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant;ASXL1|p.G1376Vfs*74|1|0.09|ENSG00000171456|chr20:32436834-32436834|G/-|frameshift_variant;ENSG00000171456|ENST00000375687|ASXL1;ASXL1|p.E705Sfs*20|1|0.46|ENSG00000171456|chr20:32434822-32434822|G/-|frameshift_variant ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7433776855469 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 32.08 1 29.932 29.432 30.432 -2.1483 0 0 0 0.1599 1 5546 5546 29.082 5.2918 1 1815 243 935 937 2135 2135 -0.007208776303400555 AEPEITRN 8 Unmodified _AEPEITRN_ 0 0 0 REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2378234863281 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 16.211 1 14.857 14.357 15.357 -1.3534 0 0 0 0.21486 1 2286 2286 4.3292 0 1 + 1816 12885 936 938 2136 2136 -0.005682800046201919 AEPELGDPSK 10 Unmodified _AEPELGDPSK_ 0 0 0 REV__ENSG00000181291|ENST00000631683|TMEM132E REV__ENSG00000181291|ENST00000631683|TMEM132E MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.258544921875 2 521.756204 1041.49785 0.40814 0.00021295 0.91568 0.00047776 1.3238 0.00069071 521.7566527424488 34.581 0.42304 32.341 32.063 32.486 -2.2405 25 11 3 0 0 0 0.6817 1 6090 6090 13.042 2.243 1 1367000 + 1817 18727 937 939 2137 2137 -0.021234478985661553 AEPELVVKLP 10 Unmodified _AEPELVVKLP_ 0 0 0 ENSG00000185313|ENST00000449082|SCN10A;SCN10A|p.F1805Lfs*8|1|0.1|ENSG00000185313|chr3:38697805-38697805|A/-|frameshift_variant ENSG00000185313|ENST00000449082|SCN10A ENSG00000185313|ENST00000449082|SCN10A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.786865234375 2 547.826432 1093.63831 NaN NaN NaN NaN NaN NaN NaN 137.47 1 132.55 132.05 133.05 -4.9216 0 0 0 2.8426 1 26427 26427 0.013265 0.011884 1 1818 6981 938 940 2138 2138 0.0952375582564855 AEPEQKGSA 9 Unmodified _AEPEQKGSA_ 0 0 0 REV__ENST00000598364.1_1_19:46318820-46320367:-|nuORF REV__ENST00000598364.1_1_19:46318820-46320367:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23876953125 2 458.722164 915.429775 0.23967 0.00010994 -0.25617 -0.00011751 -0.016502 -7.5699E-06 458.7219892074627 124.51 0.6825 119.86 119.53 120.21 -4.6495 27 18 2 0 0 0 0.77734 1 23958 23958 9.3831 0 1 1648800 + 1819 15827 939 941 2139 2139 -0.03132272758568888 AEPFLLPS 8 Unmodified _AEPFLLPS_ 0 0 0 REV__ENST00000312465.11_1_4:81187799-81187979:+|nuORF REV__ENST00000312465.11_1_4:81187799-81187979:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2291564941406 2 437.239461 872.46437 NaN NaN NaN NaN NaN NaN NaN 35.037 1 32.644 32.144 33.144 -2.3938 0 0 0 0.21452 1 6447 6447 13.508 0 1 + 1820 20497 940 942 2140 2140 0.023035951202018623 AEPGGLPSP 9 Unmodified _AEPGGLPSP_ 0 0 0 REV__nc|ENSG00000100065|Q9BWT7-2|CARD10 REV__nc|ENSG00000100065|Q9BWT7-2|CARD10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 413.227294921875 2 412.711068 823.407583 0.072302 2.984E-05 0.19793 8.1689E-05 0.27023 0.00011153 412.7110065496491 61 1.4339 57.63 56.995 58.429 -3.3694 50 40 2 0 0 0 0.12935 1 11319 11319 1.2148 0 1 955500 + 1821 23967 941 943 2141 2141 -0.011184524363329729 AEPGGSGKGR 10 Unmodified _AEPGGSGKGR_ 0 0 0 REV__ENSG00000142279|ENST00000590071|WTIP REV__ENSG00000142279|ENST00000590071|WTIP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2380676269531 2 458.235773 914.456993 NaN NaN NaN NaN NaN NaN NaN 50.049 1 47.042 46.542 47.542 -3.0068 0 0 0 0.22552 1 9189 9189 18.146 0 1 + 1822 16665 942 944 2142 2142 -0.003657444275177113 AEPGGVVMGI 10 Unmodified _AEPGGVVMGI_ 0 0 0 REV__ENSG00000112658|ENST00000265354|SRF REV__ENSG00000112658|ENST00000265354|SRF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24072265625 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 63.22 1 60.223 59.723 60.723 -2.9975 0 0 0 0.22576 1 12211 12211 14.838 0.25658 1 + 1823 15306 943 945 2143 2143 0.0017073627145691717 AEPGVSPIH 9 Unmodified _AEPGVSPIH_ 0 0 0 REV__ENST00000560945.1_1_15:64443974-64444139:+|nuORF REV__ENST00000560945.1_1_15:64443974-64444139:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7687072753906 2 453.737617 905.460681 NaN NaN NaN NaN NaN NaN NaN 24.549 1 23.014 22.514 23.514 -1.5342 0 0 0 0.23508 1 4001 4001 11.64 2.2929 1 + 1824 17307 944 946 2144 2144 0.004169253463260247 AEPHPLWEY 9 Unmodified _AEPHPLWEY_ 0 0 0 ENST00000568463.1_1_16:68389580-68391124:+|nuORF;ENST00000568975.5_1_16:68386292-68391124:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7 ENST00000568463.1_1_16:68389580-68391124:+|nuORF ENST00000568463.1_1_16:68389580-68391124:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.211669921875 3 381.181946 1140.52401 -1.5285 -0.00058263 -2.7199 -0.0010368 -4.2484 -0.0016194 381.1805133742582 20.504 0.17768 18.782 18.695 18.873 -1.7211 6 4 2 0 0 0 0.77797 1 3165 3165 2.7352 0 1 169400 1825 3746 945 947 2145 2145 -0.04063133936415397 AEPHQRPA 8 Unmodified _AEPHQRPA_ 0 0 0 TTN|p.P750H|1|0.09|ENSG00000155657|chr2:178785969-178785969|G/T|missense_variant TTN|p.P750H|1|0.09|ENSG00000155657|chr2:178785969-178785969|G/T|missense_variant TTN|p.P750H|1|0.09|ENSG00000155657|chr2:178785969-178785969|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.2325744628906 2 453.233033 904.451513 NaN NaN NaN NaN NaN NaN NaN 23.376 1 21.922 21.422 22.422 -1.4535 0 0 0 0.21486 1 3771 3771 9.3474 3.587 1 1826 26537 946 948 2146 2146 -0.0045342321934640495 AEPHTQLLA 9 Unmodified _AEPHTQLLA_ 0 0 0 REV__ENSG00000162076|ENST00000396958|FLYWCH2 REV__ENSG00000162076|ENST00000396958|FLYWCH2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2644348144531 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 52.227 1 49.15 48.65 49.65 -3.0771 0 0 0 0.22962 1 9636 9636 14.838 0.25658 1 + 1827 17481 947 949 2147 2147 0.02332883409144415 AEPKNDEI 8 Unmodified _AEPKNDEI_ 0 0 0 REV__tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1 REV__tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22442626953125 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 43.985 1 41.195 40.695 41.695 -2.79 0 0 0 0.21486 1 8254 8254 9.3474 0 1 + 1828 25353 948 950 2148 2148 -0.026113886158100286 AEPLHPISP 9 Unmodified _AEPLHPISP_ 0 0 0 REV__ENST00000358127.8_1_9:36840226-36840553:-|nuORF REV__ENST00000358127.8_1_9:36840226-36840553:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25274658203125 2 480.761092 959.507631 -0.011207 -5.3877E-06 0.31149 0.00014975 0.30028 0.00014436 480.7612743905078 75.85 0.95548 72.435 72.12 73.075 -3.4151 65 26 3 0 0 0 0.48644 1 14911 14911 20.454 1.0146 1 44592000 + 1829 20833 949 951 2149 2149 0.026257848974637454 AEPLHPISP 9 Unmodified _AEPLHPISP_ 0 0 0 REV__ENST00000358127.8_1_9:36840226-36840553:-|nuORF REV__ENST00000358127.8_1_9:36840226-36840553:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.252197265625 2 480.761092 959.507631 0.14975 7.1996E-05 0.1589 7.6392E-05 0.30865 0.00014839 480.76118200887794 76.091 1.2172 72.457 72.1 73.317 -3.6337 73 34 3 0 0 0 0.48644 1 14636 14636 20.454 2.3186 1 44841000 + 1830 20833 949 951 2150 2150 0.026257848974637454 AEPLNLFRPF 10 Unmodified _AEPLNLFRPF_ 0 0 0 ENSG00000148841|ENST00000337478|ITPRIP ENSG00000148841|ENST00000337478|ITPRIP ENSG00000148841|ENST00000337478|ITPRIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 401.8854675292969 3 401.888874 1202.64479 -0.56422 -0.00022676 0.14909 5.9918E-05 -0.41513 -0.00016684 401.8887139021014 37.601 0.30768 35.132 34.915 35.223 -2.4688 11 8 2 0 0 0 0.48196 1 6906 6906 0.26539 0.1255 1 487950 1831 4764 950 952 2151 2151 0.051576937770278164 AEPLNLFRPF 10 Unmodified _AEPLNLFRPF_ 0 0 0 ENSG00000148841|ENST00000337478|ITPRIP ENSG00000148841|ENST00000337478|ITPRIP ENSG00000148841|ENST00000337478|ITPRIP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 401.888874 1202.64479 0.071623 2.8785E-05 -0.75244 -0.0003024 -0.68082 -0.00027361 401.8886749065602 37.519 0.34834 35.171 34.96 35.308 -2.3479 0.041241 -0.00037545 NaN 0.26539 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 477850 1832 4764 950 952 0.051576937770278164 AEPLNLFRPF 10 Unmodified _AEPLNLFRPF_ 0 0 0 ENSG00000148841|ENST00000337478|ITPRIP ENSG00000148841|ENST00000337478|ITPRIP ENSG00000148841|ENST00000337478|ITPRIP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 401.888874 1202.64479 -0.28822 -0.00011583 -0.47797 -0.00019209 -0.76619 -0.00030792 401.88865976092745 37.425 0.345 35.087 34.911 35.256 -2.3375 -0.043068 -4.4533E-05 NaN 0.26539 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 483810 1833 4764 950 952 0.051576937770278164 AEPNLDTA 8 Unmodified _AEPNLDTA_ 0 0 0 ENST00000483371.1_1_1:109171009-109177769:+|nuORF;nc|ENSG00000162636|Q5T8I3-2|EEIG2;ENSG00000162636|ENST00000370035|EEIG2 ENST00000483371.1_1_1:109171009-109177769:+|nuORF ENST00000483371.1_1_1:109171009-109177769:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 831.3720703125 1 830.389039 829.381762 0.6185 0.00051359 -0.16703 -0.0001387 0.45146 0.00037489 830.3888392893687 39.174 1.7113 39.174 38.712 40.424 0 102 48 3 0 0 0 0.69031 1 7392 7392 15.847 0 1 9044400 1834 5348 951 953 2152 2152 -0.03975346678623737 AEPNLGGVFI 10 Unmodified _AEPNLGGVFI_ 0 0 0 REV__nc|ENSG00000197451|Q99729-3|HNRNPAB REV__nc|ENSG00000197451|Q99729-3|HNRNPAB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.7105712890625 2 508.7742 1015.53385 0.20302 0.00010329 1.957 0.00099565 2.16 0.0010989 508.77403911842754 141.72 0.17427 141.72 141.57 141.75 0 6 4 2 0 0 0 0.71778 1 28229 28229 9.3831 0 1 868620 + 1835 19338 952 954 2153 2153 0.026700540689716945 AEPPLGKYS 9 Unmodified _AEPPLGKYS_ 0 0 0 REV__ENSG00000140564|ENST00000268171|FURIN REV__ENSG00000140564|ENST00000268171|FURIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2534484863281 2 481.2531 960.491647 0.15328 7.3766E-05 -0.81561 -0.00039252 -0.66233 -0.00031875 481.25313689118605 96.71 0.9654 92.475 91.951 92.916 -4.2348 45 27 2 0 0 0 0.58804 1 18530 18530 13.906 0.39817 1 3681000 + 1836 16588 953 955 2154 2154 0.00982078660570096 AEPPLPSY 8 Unmodified _AEPPLPSY_ 0 0 0 REV__ENSG00000262543|ENST00000573100|SMIM28 REV__ENSG00000262543|ENST00000573100|SMIM28 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2197570800781 2 437.221268 872.427984 NaN NaN NaN NaN NaN NaN NaN 37.56 1 35.223 34.723 35.723 -2.3375 0 0 0 0.17894 1 6653 6653 32.117 1.8922 1 + 1837 19893 954 956 2155 2155 -0.013332817765217442 AEPPMQDQ 8 Unmodified _AEPPMQDQ_ 0 0 0 REV__ENSG00000111046|ENST00000228641|MYF6 REV__ENSG00000111046|ENST00000228641|MYF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2236328125 2 458.197467 914.380382 0.26365 0.0001208 0.93374 0.00042784 1.1974 0.00054864 458.1977507438846 33.399 0.62885 33.399 33.025 33.654 0 19 17 2 0 0 0 0.71876 1 6099 6099 11.64 1.5664 1 782640 + 1838 15227 955 957 2156 2156 -0.08023304039022605 AEPPPPYSEV 10 Unmodified _AEPPPPYSEV_ 0 0 0 nc|ENSG00000131188|Q8TB68-2|PRR7;ENSG00000131188|ENST00000323249|PRR7 nc|ENSG00000131188|Q8TB68-2|PRR7 nc|ENSG00000131188|Q8TB68-2|PRR7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7897338867188 2 543.261122 1084.50769 0.75033 0.00040762 -0.60065 -0.00032631 0.14967 8.1312E-05 543.2606002602898 78.82 0.66121 78.82 78.436 79.097 0 27 18 2 0 0 0 0.71778 1 15306 15306 9.3831 0 1 1959900 1839 3662 956 958 2157 2157 -0.03118259893199138 AEPPPQPPP 9 Unmodified _AEPPPQPPP_ 0 0 0 ENSG00000183654|ENST00000332432|MARCHF11 ENSG00000183654|ENST00000332432|MARCHF11 ENSG00000183654|ENST00000332432|MARCHF11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2399597167969 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 43.33 1 40.724 40.224 41.224 -2.606 0 0 0 0.20155 1 7817 7817 23.148 6.2061 1 1840 6859 957 959 2158 2158 -0.0016619051091311121 AEPPPRPPP 9 Unmodified _AEPPPRPPP_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA;ENST00000602258.1_1_19:48204415-48205669:+|nuORF ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23175048828125 2 479.261259 956.507966 0.20007 9.5886E-05 -0.18847 -9.0326E-05 0.011601 5.5597E-06 479.26110924284495 26.901 8.3947 25.266 23.926 32.321 -1.6347 610 239 5 0 0 0 0.62314 1 4433 4433 11.64 0 1 45727000 1841 1325 958 960 2159 2159 0.027972046173204035 AEPPSTEPT 9 Unmodified _AEPPSTEPT_ 0 0 0 nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A;ENST00000598362.1_1_19:35504529-35505380:+|nuORF nc|ENSG00000089351|Q96CP6-2|GRAMD1A nc|ENSG00000089351|Q96CP6-2|GRAMD1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2503356933594 2 464.716547 927.418542 -0.097851 -4.5473E-05 0.40958 0.00019034 0.31173 0.00014487 464.71644698029024 46.427 0.38181 43.56 43.441 43.823 -2.8666 12 10 2 0 0 0 0.48181 1 8466 8466 0.40827 0 1 371040 1842 1761 959 961 2160 2160 -0.048070948526969914 AEPPVLDFAK 10 Unmodified _AEPPVLDFAK_ 0 0 0 REV__nc|ENSG00000169299|Q96G03-2|PGM2 REV__nc|ENSG00000169299|Q96G03-2|PGM2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7941284179688 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 16.977 1 15.705 15.205 16.205 -1.2722 0 0 0 0.22588 1 2474 2474 6.2058 0 1 + 1843 18094 960 962 2161 2161 0.036346097574551095 AEPQKSPP 8 Unmodified _AEPQKSPP_ 0 0 0 REV__LTN1|p.S725Ifs*7|1|0.06|ENSG00000198862|chr21:28960696-28960697|-/ATGTTAAAAA|frameshift_variant REV__LTN1|p.S725Ifs*7|1|0.06|ENSG00000198862|chr21:28960696-28960697|-/ATGTTAAAAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.2662353515625 2 427.224342 852.434132 NaN NaN NaN NaN NaN NaN NaN 36.739 1 34.392 33.892 34.892 -2.3479 0 0 0 0.21486 1 6500 6500 7.9102 0.62092 1 + 1844 19465 961 963 2162 2162 0.0020123645499552367 AEPRHGELW 9 Unmodified _AEPRHGELW_ 0 0 0 TADA3-PRPF6|1|fusion;nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6 TADA3-PRPF6|1|fusion TADA3-PRPF6|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7748413085938 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 25.159 1 23.511 23.011 24.011 -1.6482 0 0 0 0.23508 1 4407 4407 7.2892 0 1 1845 2041 962 964 2163 2163 -0.012531959850548446 AEPRRAHMN 9 Unmodified _AEPRRAHMN_ 0 0 0 ENST00000575312.1_1_17:79669519-79669810:-|nuORF ENST00000575312.1_1_17:79669519-79669810:-|nuORF ENST00000575312.1_1_17:79669519-79669810:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.269287109375 2 541.269624 1080.5247 NaN NaN NaN NaN NaN NaN NaN 14.228 1 13.114 12.614 13.614 -1.1142 0 0 0 0.23508 1 2119 2119 2.0598 0 1 1846 11454 963 965 2164 2164 -0.012346177683639326 AEPRRPREL 9 Unmodified _AEPRRPREL_ 0 0 0 ENST00000517894.5_3_8:143530803-143545560:+|nuORF ENST00000517894.5_3_8:143530803-143545560:+|nuORF ENST00000517894.5_3_8:143530803-143545560:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2159118652344 3 375.215873 1122.62579 -0.42005 -0.00015761 0.22762 8.5406E-05 -0.19243 -7.2202E-05 375.2159637234933 41.464 0.54971 38.829 38.502 39.052 -2.6348 22 15 2 0 0 0 0.6797 1 7749 7749 7.609 7.609 1 1217500 1847 10799 964 966 2165 2165 0.06938157205991047 AEPRRPREL 9 Unmodified _AEPRRPREL_ 0 0 0 ENST00000517894.5_3_8:143530803-143545560:+|nuORF ENST00000517894.5_3_8:143530803-143545560:+|nuORF ENST00000517894.5_3_8:143530803-143545560:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2157287597656 3 375.215873 1122.62579 -0.036466 -1.3683E-05 -0.436 -0.00016359 -0.47246 -0.00017728 375.21574064796795 41.253 0.37842 38.714 38.488 38.866 -2.5398 17 10 2 0 0 0 0.6797 1 7381 7381 7.609 4.0219 1 945110 1848 10799 964 966 2166 2166 0.06938157205991047 AEPRRPREL 9 Unmodified _AEPRRPREL_ 0 0 0 ENST00000517894.5_3_8:143530803-143545560:+|nuORF ENST00000517894.5_3_8:143530803-143545560:+|nuORF ENST00000517894.5_3_8:143530803-143545560:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2225646972656 3 375.215873 1122.62579 -0.62468 -0.00023439 0.35526 0.0001333 -0.26942 -0.00010109 375.21587156443104 41.199 0.53421 38.709 38.422 38.957 -2.4896 18 14 2 0 0 0 0.73814 1 7426 7426 4.5289 0.33936 1 635720 1849 10799 964 966 2167 2167 0.06938157205991047 AEPRSESM 8 Unmodified _AEPRSESM_ 0 0 0 ENST00000523067.5_2_8:141958806-142011258:-|nuORF ENST00000523067.5_2_8:141958806-142011258:-|nuORF ENST00000523067.5_2_8:141958806-142011258:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7504577636719 2 453.702917 905.391281 -0.18981 -8.6118E-05 -0.99608 -0.00045192 -1.1859 -0.00053804 453.70228434868545 114.21 0.80598 109.74 109.23 110.04 -4.4726 32 22 2 0 0 0 0.62642 1 22541 22541 20.454 1.1966 1 1394400 1850 10867 965 967 2168 2168 -0.06519901664728422 AEPRSESM 8 Unmodified _AEPRSESM_ 0 0 0 ENST00000523067.5_2_8:141958806-142011258:-|nuORF ENST00000523067.5_2_8:141958806-142011258:-|nuORF ENST00000523067.5_2_8:141958806-142011258:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.702917 905.391281 -0.18981 -8.6118E-05 -0.99608 -0.00045192 -1.1859 -0.00053804 453.70228434868545 114.21 0.80598 109.74 109.23 110.04 -4.4726 0.087629 -5.5036E-05 NaN 20.454 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1394400 1851 10867 965 967 -0.06519901664728422 AEPSARVDI 9 Unmodified _AEPSARVDI_ 0 0 0 DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant;ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.G1030Afs*31|1|0.16|ENSG00000166341|chr11:6632423-6632423|C/-|frameshift_variant DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72265625 2 479.253631 956.49271 0.072328 3.4664E-05 -2.3324 -0.0011178 -2.26 -0.0010831 479.25234452416026 63.377 0.47338 60.38 60.151 60.625 -2.9975 17 13 2 0 0 0 0.85111 1 12227 12227 10.824 4.1008 1 752420 1852 789 966 968 2169 2169 0.012722930294785328 AEPSPKAERG 10 Unmodified _AEPSPKAERG_ 0 0 0 REV__ENST00000336614.8_1_19:58967852-58967984:+|nuORF REV__ENST00000336614.8_1_19:58967852-58967984:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2675170898438 2 521.269813 1040.52507 0.85139 0.0004438 -3.0136 -0.0015709 -2.1622 -0.0011271 521.2688829940316 25.012 0.37991 23.363 23.131 23.511 -1.6482 15 10 3 0 0 0 0.50973 1 4377 4377 1.9275 0.18523 1 385080 + 1853 20665 967 969 2170 2170 0.006430804324736528 AEPSSSLAPP 10 Unmodified _AEPSSSLAPP_ 0 0 0 REV__ENST00000357736.8_1_17:79878238-79878646:-|nuORF REV__ENST00000357736.8_1_17:79878238-79878646:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7385559082031 2 478.24019 954.465826 0.20828 9.961E-05 -0.51651 -0.00024702 -0.30822 -0.0001474 478.2399028771986 33.59 0.52002 31.443 31.187 31.707 -2.1468 23 14 2 0 0 0 0.46704 1 5813 5813 0.26539 0.14252 1 856300 + 1854 20829 968 970 2171 2171 -0.013228155817159859 AEPTHSPSP 9 Unmodified _AEPTHSPSP_ 0 0 0 REV__ENST00000435327.2_1_3:42791351-42799837:-|nuORF REV__ENST00000435327.2_1_3:42791351-42799837:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5322265625 2 461.716882 921.41921 0.065285 3.0143E-05 -1.4032 -0.00064789 -1.3379 -0.00061774 461.71538406212454 36.777 0.44477 34.429 34.243 34.687 -2.3479 14 12 2 0 0 0 0.71527 1 6498 6498 19.257 4.4187 1 503920 + 1855 21658 969 971 2172 2172 -0.04464255412995044 AEPTMTFWYD 10 Unmodified _AEPTMTFWYD_ 0 0 0 REV__nc|ENSG00000136114|Q9NS62-3|THSD1 REV__nc|ENSG00000136114|Q9NS62-3|THSD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7642822265625 2 630.765714 1259.51688 NaN NaN NaN NaN NaN NaN NaN 46.73 1 43.889 43.389 44.389 -2.8409 0 0 0 2.8426 1 8818 8818 0.26539 0.2216 1 + 1856 16314 970 972 2173 2173 -0.10250234599152463 AEPVAKADE 9 Unmodified _AEPVAKADE_ 0 0 0 REV__ARHGAP31|p.A1199Rfs*106|1|0.34|ENSG00000031081|chr3:119415522-119415522|G/-|frameshift_variant REV__ARHGAP31|p.A1199Rfs*106|1|0.34|ENSG00000031081|chr3:119415522-119415522|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25665283203125 2 465.232364 928.450176 0.96176 0.00044744 -1.0476 -0.00048738 -0.085853 -3.9942E-05 465.231889183564 26.952 0.47849 25.17 24.794 25.272 -1.7821 20 13 2 0 0 0 0.6329 1 4716 4716 10.824 0 1 671130 + 1857 13100 971 973 2174 2174 -0.016911020987663505 AEPVGCLRA 9 Unmodified _AEPVGCLRA_ 0 0 0 REV__ABCA7|p.R1895C|1|0.41|ENSG00000064687|chr19:1062284-1062284|C/T|missense_variant REV__ABCA7|p.R1895C|1|0.41|ENSG00000064687|chr19:1062284-1062284|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23736572265625 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 50.57 1 47.689 47.189 48.189 -2.8811 0 0 0 0.22962 1 9595 9595 14.838 0 1 + 1858 12893 972 974 2175 2175 0.003732718485366604 AEPVPPVPEF 10 Unmodified _AEPVPPVPEF_ 0 0 0 REV__ENSG00000099385|ENST00000215115|BCL7C REV__ENSG00000099385|ENST00000215115|BCL7C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.283203125 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 71.484 1 71.484 70.984 71.984 0 0 0 0 0.22544 1 13851 13851 19.257 3.4098 1 + 1859 14638 973 975 2176 2176 0.012109208661286175 AEPYEELEAE 10 Unmodified _AEPYEELEAE_ 0 0 0 nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4;ENST00000318809.11_1_19:41120174-41135452:+|nuORF;nc|ENSG00000090006|Q8N2S1-4|LTBP4;ENST00000595118.5_1_19:41119631-41135452:+|nuORF;ENSG00000090006|ENST00000396819|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2586669921875 2 590.256234 1178.49791 NaN NaN NaN NaN NaN NaN NaN 45.762 1 45.762 45.262 46.262 0 0 0 0 0.22588 1 8608 8608 6.7232 1.8262 1 1860 12248 974 976 2177 2177 -0.08419492689222352 AEQADVKL 8 Unmodified _AEQADVKL_ 0 0 0 REV__AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant REV__AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23614501953125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 86.295 1 82.568 82.068 83.068 -3.727 0 0 0 0.21486 1 16868 16868 11.64 1.4569 1 + 1861 12995 975 977 2178 2178 0.019015056264720442 AEQAFIER 8 Unmodified _AEQAFIER_ 0 0 0 REV__ENSG00000016391|ENST00000315251|CHDH REV__ENSG00000016391|ENST00000315251|CHDH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76690673828125 2 482.248349 962.482145 0.0045293 2.1843E-06 0.035417 1.708E-05 0.039946 1.9264E-05 482.2483307495766 46.996 0.83125 44.155 43.728 44.56 -2.8409 55 23 4 0 0 0 0.38349 1 8890 8890 56.177 6.244 1 9931600 + 1862 13964 976 978 2179 2179 -0.0005968962495899177 AEQAFIER 8 Unmodified _AEQAFIER_ 0 0 0 REV__ENSG00000016391|ENST00000315251|CHDH REV__ENSG00000016391|ENST00000315251|CHDH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76690673828125 2 482.248349 962.482145 -0.19021 -9.173E-05 0.45029 0.00021715 0.26007 0.00012542 482.24840275842814 47.048 0.89858 44.098 43.739 44.638 -2.9499 71 25 5 0 0 0 0.38349 1 8577 8577 47.749 0 1 6429900 + 1863 13964 976 978 2180 2180 -0.0005968962495899177 AEQAKVVLA 9 Unmodified _AEQAKVVLA_ 0 0 0 ENSG00000111678|ENST00000229281|C12orf57 ENSG00000111678|ENST00000229281|C12orf57 ENSG00000111678|ENST00000229281|C12orf57 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25262451171875 2 464.776742 927.538931 0.49812 0.00023151 -0.78418 -0.00036447 -0.28607 -0.00013296 464.7763571573924 47.214 1.0219 47.214 46.729 47.751 0 96 28 5 0 0 0 0.25976 1 8993 8993 19.626 16.039 1 64662000 1864 2636 977 979 2181 2181 0.07226357931551775 AEQAKVVLA 9 Unmodified _AEQAKVVLA_ 0 0 0 ENSG00000111678|ENST00000229281|C12orf57 ENSG00000111678|ENST00000229281|C12orf57 ENSG00000111678|ENST00000229281|C12orf57 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2562561035156 2 464.776742 927.538931 -0.18429 -8.5653E-05 -0.41538 -0.00019306 -0.59967 -0.00027871 464.77652632733293 49.737 1.014 46.856 46.449 47.463 -2.8811 84 28 4 0 0 0 0.32069 1 9377 9377 38.615 16.868 1 100730000 1865 2636 977 979 2182 2182 0.07226357931551775 AEQAKVVLA 9 Unmodified _AEQAKVVLA_ 0 0 0 ENSG00000111678|ENST00000229281|C12orf57 ENSG00000111678|ENST00000229281|C12orf57 ENSG00000111678|ENST00000229281|C12orf57 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25738525390625 2 464.776742 927.538931 -0.0069528 -3.2315E-06 -0.50613 -0.00023524 -0.51309 -0.00023847 464.77649147239526 49.888 0.95647 46.889 46.479 47.436 -2.999 86 27 4 0 0 0 0.041889 3 9184 9183;9184;9236 90.135 45.484 1 103020000 1866 2636 977 979 2183;2184;2185 2184 0.07226357931551775 AEQAKVVLA 9 Unmodified _AEQAKVVLA_ 0 0 0 ENSG00000111678|ENST00000229281|C12orf57 ENSG00000111678|ENST00000229281|C12orf57 ENSG00000111678|ENST00000229281|C12orf57 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25677490234375 2 464.776742 927.538931 -0.071408 -3.3189E-05 -0.4039 -0.00018772 -0.47531 -0.00022091 464.77652458020816 49.896 1.4801 46.889 46.488 47.968 -3.0068 101 42 4 0 0 0 0.16962 1 9252 9252 51.415 22.334 1 86109000 1867 2636 977 979 2186 2186 0.07226357931551775 AEQARTAAAPT 11 Unmodified _AEQARTAAAPT_ 0 0 0 ENST00000354336.7_1_22:21271864-21272434:+|nuORF ENST00000354336.7_1_22:21271864-21272434:+|nuORF ENST00000354336.7_1_22:21271864-21272434:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7784423828125 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 42.614 1 42.614 42.114 43.114 0 0 0 0 0.1832 1 7971 7971 22.736 3.4793 1 1868 8943 978 980 2187 2187 0.0071846546118194965 AEQARTAAAPT 11 Unmodified _AEQARTAAAPT_ 0 0 0 ENST00000354336.7_1_22:21271864-21272434:+|nuORF ENST00000354336.7_1_22:21271864-21272434:+|nuORF ENST00000354336.7_1_22:21271864-21272434:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7826538085938 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 15.982 1 14.766 14.266 15.266 -1.2159 0 0 0 0.23018 1 2492 2492 8.1555 0.8663 1 1869 8943 978 980 2188 2188 0.0071846546118194965 AEQATHLLP 9 Unmodified _AEQATHLLP_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2735900878906 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 65.702 1 62.655 62.155 63.155 -3.047 0 0 0 0.19721 1 12720 12720 24.021 4.7636 1 + 1870 18819 979 981 2189 2189 0.023328834091330464 AEQATHLLP 9 Unmodified _AEQATHLLP_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2744445800781 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 66.201 1 62.704 62.204 63.204 -3.4965 0 0 0 0.21844 1 12404 12404 18.146 4.2403 1 + 1871 18819 979 981 2190 2190 0.023328834091330464 AEQATHLLP 9 Unmodified _AEQATHLLP_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2554016113281 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 66.233 1 62.736 62.236 63.236 -3.4965 0 0 0 0.19721 1 12410 12410 24.021 4.7636 1 + 1872 18819 979 981 2191 2191 0.023328834091330464 AEQCFGCY 8 Unmodified _AEQCFGCY_ 0 0 0 REV__ENSG00000110717|ENST00000313468|NDUFS8 REV__ENSG00000110717|ENST00000313468|NDUFS8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.248046875 2 460.667489 919.320424 0.20217 9.3135E-05 3.2614 0.0015024 3.4635 0.0015955 460.67078701707663 34.351 0.85737 34.351 33.901 34.759 0 77 24 4 0 0 0 0.97173 1 6312 6312 18.135 1.1927 1 1882700 + 1873 15213 980 982 2192 2192 -0.14246317973913847 AEQDELSQRLA 11 Unmodified _AEQDELSQRLA_ 0 0 0 ENSG00000255112|ENST00000526991|CHMP1B ENSG00000255112|ENST00000526991|CHMP1B ENSG00000255112|ENST00000526991|CHMP1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7636108398438 2 630.314948 1258.61534 0.98622 0.00062163 -0.65984 -0.0004159 0.32639 0.00020573 630.3144723368995 64.19 0.69978 61.192 60.839 61.539 -2.9975 49 19 3 0 0 0 0.48776 1 12460 12460 23.801 11.56 1 9416800 1874 7929 981 983 2193 2193 -0.0036191502974816103 AEQDELSQRLA 11 Unmodified _AEQDELSQRLA_ 0 0 0 ENSG00000255112|ENST00000526991|CHMP1B ENSG00000255112|ENST00000526991|CHMP1B ENSG00000255112|ENST00000526991|CHMP1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7710571289062 2 630.314948 1258.61534 0.44489 0.00028042 -0.50904 -0.00032085 -0.06415 -4.0435E-05 630.3147313492115 64.683 0.69961 61.224 60.909 61.609 -3.4581 47 19 3 0 0 0 0.20216 1 12107 12107 64.692 39.701 1 7769800 1875 7929 981 983 2194 2194 -0.0036191502974816103 AEQDELSQRLA 11 Unmodified _AEQDELSQRLA_ 0 0 0 ENSG00000255112|ENST00000526991|CHMP1B ENSG00000255112|ENST00000526991|CHMP1B ENSG00000255112|ENST00000526991|CHMP1B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 630.314948 1258.61534 0.09327 5.8789E-05 -0.024071 -1.5173E-05 0.069199 4.3617E-05 630.3150281891934 61.184 0.65887 61.184 60.838 61.496 0 -0.021728 0.00046218 NaN 64.692 45 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6328500 1876 7929 981 983 -0.0036191502974816103 AEQDELSQRLA 11 Unmodified _AEQDELSQRLA_ 0 0 0 ENSG00000255112|ENST00000526991|CHMP1B ENSG00000255112|ENST00000526991|CHMP1B ENSG00000255112|ENST00000526991|CHMP1B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 630.314948 1258.61534 0.52714 0.00033226 -0.35215 -0.00022196 0.17499 0.0001103 630.3147504495515 64.48 0.73432 61.223 60.813 61.547 -3.2567 0.016999 4.8597E-05 NaN 64.692 57 20 4 NaN NaN NaN NaN 0 NaN NaN 0 6101200 1877 7929 981 983 -0.0036191502974816103 AEQDLIREL 9 Unmodified _AEQDLIREL_ 0 0 0 ENSG00000125124|ENST00000245157|BBS2;BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant;ENST00000561853.1_1_16:56536201-56536626:-|nuORF;ENST00000565781.5_1_16:56536201-56536402:-|nuORF;ENST00000561951.5_1_16:56535647-56545169:-|nuORF ENSG00000125124|ENST00000245157|BBS2 ENSG00000125124|ENST00000245157|BBS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7930908203125 2 543.793121 1085.57169 0.32303 0.00017566 -0.43235 -0.00023511 -0.10932 -5.9445E-05 543.7929388505657 115.81 0.67172 115.81 115.38 116.05 0 44 18 3 0 0 0 5.9445E-08 3 22785 22742;22785;22831 150.62 69.943 1 7866700 1878 3343 982 984 2195;2196;2197 2196 0.032325202637593975 AEQDLIREL 9 Unmodified _AEQDLIREL_ 0 0 0 ENSG00000125124|ENST00000245157|BBS2;BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant;ENST00000561853.1_1_16:56536201-56536626:-|nuORF;ENST00000565781.5_1_16:56536201-56536402:-|nuORF;ENST00000561951.5_1_16:56535647-56545169:-|nuORF ENSG00000125124|ENST00000245157|BBS2 ENSG00000125124|ENST00000245157|BBS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7931518554688 2 543.793121 1085.57169 0.50052 0.00027218 -0.41046 -0.00022321 0.090051 4.8969E-05 543.7928251287154 119.94 0.73326 115.41 115.08 115.82 -4.5221 55 20 3 0 0 0 2.9666E-11 5 23663 23624;23631;23663;23702;23704 158.08 50.977 1 12619000 1879 3343 982 984 2198;2199;2200;2201;2202 2200 0.032325202637593975 AEQDLIREL 9 Unmodified _AEQDLIREL_ 0 0 0 ENSG00000125124|ENST00000245157|BBS2;BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant;ENST00000561853.1_1_16:56536201-56536626:-|nuORF;ENST00000565781.5_1_16:56536201-56536402:-|nuORF;ENST00000561951.5_1_16:56535647-56545169:-|nuORF ENSG00000125124|ENST00000245157|BBS2 ENSG00000125124|ENST00000245157|BBS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7930297851562 2 543.793121 1085.57169 0.61724 0.00033565 -0.57235 -0.00031124 0.044893 2.4413E-05 543.7927764636723 120.12 0.84935 115.47 114.99 115.84 -4.645 58 23 3 0 0 0 5.9445E-08 4 23071 23021;23071;23118;23121 150.62 47.199 1 13455000 1880 3343 982 984 2203;2204;2205;2206 2204 0.032325202637593975 AEQDLIREL 9 Unmodified _AEQDLIREL_ 0 0 0 ENSG00000125124|ENST00000245157|BBS2;BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant;ENST00000561853.1_1_16:56536201-56536626:-|nuORF;ENST00000565781.5_1_16:56536201-56536402:-|nuORF;ENST00000561951.5_1_16:56535647-56545169:-|nuORF ENSG00000125124|ENST00000245157|BBS2 ENSG00000125124|ENST00000245157|BBS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7931518554688 2 543.793121 1085.57169 0.46369 0.00025215 -0.36064 -0.00019611 0.10305 5.6039E-05 543.7929381429279 120.02 0.75995 115.55 115.13 115.89 -4.467 57 21 3 0 0 0 0.00012453 4 23079 23079;23122;23135;23136 124.95 49.192 1 14034000 1881 3343 982 984 2207;2208;2209;2210 2207 0.032325202637593975 AEQEATVAP 9 Unmodified _AEQEATVAP_ 0 0 0 nc|ENSG00000291072|Q86T23|CROCCP2 nc|ENSG00000291072|Q86T23|CROCCP2 nc|ENSG00000291072|Q86T23|CROCCP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22467041015625 2 458.224539 914.434526 0.42607 0.00019524 -0.36783 -0.00016855 0.058242 2.6688E-05 458.22429713414226 32.841 0.62785 30.625 30.316 30.944 -2.2158 28 17 2 0 0 0 0.10573 1 5703 5703 53.833 9.9745 1 808500 1882 12664 983 985 2211 2211 -0.026113886158100286 AEQEDWFNYAT 11 Unmodified _AEQEDWFNYAT_ 0 0 0 REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1 REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2362365722656 3 458.52633 1372.55716 NaN NaN NaN NaN NaN NaN NaN 24.844 1 23.31 22.81 23.81 -1.5342 0 0 0 0.23562 1 4059 4059 3.8459 1.4111 1 + 1883 25162 984 986 2212 2212 -0.11421596675040746 AEQELLDASER 11 Unmodified _AEQELLDASER_ 0 0 0 ENSG00000133020|ENST00000403437|MYH8;ENSG00000109061|ENST00000226207|MYH1;ENSG00000264424|ENST00000255381|MYH4;ENSG00000125414|ENST00000245503|MYH2 ENSG00000133020|ENST00000403437|MYH8 ENSG00000133020|ENST00000403437|MYH8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.759033203125 2 630.806956 1259.59936 NaN NaN NaN NaN NaN NaN NaN 52.937 1 52.937 52.437 53.437 0 0 0 0 0.22595 1 10068 10068 11.495 0 1 1884 2511 985 987 2213 2213 -0.020056212666759166 AEQEMQRIKA 10 Unmodified _AEQEMQRIKA_ 0 0 0 nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2 nc|ENSG00000186575|P35240-4|NF2 nc|ENSG00000186575|P35240-4|NF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2724609375 2 602.311155 1202.60776 0.43042 0.00025924 0.62579 0.00037692 1.0562 0.00063616 602.3115377523727 29.03 0.35002 29.03 28.845 29.195 0 16 9 3 0 0 0 0.068618 1 5170 5170 78.61 46.573 1 1385800 1885 7067 986 988 2214 2214 0.014556541689671576 AEQEMQRIKA 10 Unmodified _AEQEMQRIKA_ 0 0 0 nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2 nc|ENSG00000186575|P35240-4|NF2 nc|ENSG00000186575|P35240-4|NF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2978515625 2 602.311155 1202.60776 0.5892 0.00035488 0.29484 0.00017759 0.88405 0.00053247 602.3115674964417 31.143 0.49136 28.994 28.705 29.196 -2.1483 18 13 2 0 0 0 0.0095942 1 5362 5362 105.35 55.791 1 1544900 1886 7067 986 988 2215 2215 0.014556541689671576 AEQEMQRIKA 10 Unmodified _AEQEMQRIKA_ 0 0 0 nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2 nc|ENSG00000186575|P35240-4|NF2 nc|ENSG00000186575|P35240-4|NF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 602.311155 1202.60776 0.65434 0.00039412 0.19438 0.00011708 0.84872 0.0005112 602.3115567013089 31.032 0.45221 29.006 28.744 29.197 -2.0264 0.0028317 -0.00014841 NaN 105.35 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1829100 1887 7067 986 988 0.014556541689671576 AEQEQRKIP 9 Unmodified _AEQEQRKIP_ 0 0 0 nc|ENSG00000146223|Q6DKI1-2|RPL7L1;RPL7L1|p.Q126Pfs*38|1|0.24|ENSG00000146223|chr6:42884698-42884699|-/C|frameshift_variant;ENSG00000146223|ENST00000493763|RPL7L1;ENST00000397415.7_1_6:42847675-42848752:+|nuORF;RPL7L1|p.L69Pfs*4|1|0.11|ENSG00000146223|chr6:42883536-42883536|T/-|frameshift_variant nc|ENSG00000146223|Q6DKI1-2|RPL7L1 nc|ENSG00000146223|Q6DKI1-2|RPL7L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 366.8421325683594 3 366.86825 1097.58292 -1.4488 -0.00053151 1.1321 0.00041533 -0.31668 -0.00011618 366.8686587305672 20.835 1.3217 19.114 18.765 20.087 -1.7211 61 37 2 0 0 0 0.25976 1 3227 3227 17.113 12.216 1 807410 1888 4645 987 989 2216 2216 0.03803342357900874 AEQERAQF 8 Unmodified _AEQERAQF_ 0 0 0 chr16:23680242-23681000|388|10.3|0.45|4.52|+|2|PLK1,PLK1|2 chr16:23680242-23681000|388|10.3|0.45|4.52|+|2|PLK1,PLK1|2 chr16:23680242-23681000|388|10.3|0.45|4.52|+|2|PLK1,PLK1|2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25604248046875 2 489.735606 977.456658 0.053237 2.6072E-05 -1.219 -0.00059697 -1.1657 -0.0005709 489.735484114303 35.796 0.87675 33.519 33.316 34.193 -2.2766 43 24 3 0 0 0 0.44108 1 6277 6277 30.637 2.142 1 3990100 1889 540 988 990 2217 2217 -0.03297164147386411 AEQERAQF 8 Unmodified _AEQERAQF_ 0 0 0 chr16:23680242-23681000|388|10.3|0.45|4.52|+|2|PLK1,PLK1|2 chr16:23680242-23681000|388|10.3|0.45|4.52|+|2|PLK1,PLK1|2 chr16:23680242-23681000|388|10.3|0.45|4.52|+|2|PLK1,PLK1|2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.735606 977.456658 0.19006 9.3079E-05 -0.89036 -0.00043604 -0.70031 -0.00034296 489.73562368056287 33.538 0.87099 33.538 33.341 34.212 0 0.0060621 0.00050057 NaN 30.637 34 24 2 NaN NaN NaN NaN 0 NaN NaN 0 4103900 1890 540 988 990 -0.03297164147386411 AEQEYNATVA 10 Unmodified _AEQEYNATVA_ 0 0 0 nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;ENST00000438023.5_2_9:6982745-7014111:+|nuORF nc|ENSG00000293552|Q9H3R0-2|KDM4C nc|ENSG00000293552|Q9H3R0-2|KDM4C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7932739257812 2 548.251286 1094.48802 -0.044659 -2.4484E-05 -0.17705 -9.7066E-05 -0.22171 -0.00012155 548.7521799435276 40.48 0.70779 37.846 37.655 38.363 -2.6348 39 19 3 0 0 0 0.5938 1 7566 7566 38.615 22.768 1 5570100 1891 2412 989 991 2218 2218 -0.05544635903947892 AEQFAITEA 9 Unmodified _AEQFAITEA_ 0 0 0 ENSG00000185519|ENST00000375662|FAM131C;ENST00000447882.1_1_1:16361675-16363149:-|nuORF ENSG00000185519|ENST00000375662|FAM131C ENSG00000185519|ENST00000375662|FAM131C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2765197753906 2 490.24019 978.465826 -0.0050927 -2.4967E-06 0.24315 0.0001192 0.23806 0.00011671 490.24026357258725 91.871 0.90948 91.871 91.391 92.301 0 70 25 4 0 0 0 0.11828 1 17890 17890 49.554 17.249 1 21705000 1892 6998 990 992 2219 2219 -0.024268155817367187 AEQFAITEA 9 Unmodified _AEQFAITEA_ 0 0 0 ENSG00000185519|ENST00000375662|FAM131C;ENST00000447882.1_1_1:16361675-16363149:-|nuORF ENSG00000185519|ENST00000375662|FAM131C ENSG00000185519|ENST00000375662|FAM131C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2767333984375 2 490.24019 978.465826 0.15567 7.6317E-05 -0.059748 -2.9291E-05 0.095925 4.7026E-05 490.24009767151773 95.998 0.78328 91.949 91.546 92.329 -4.0496 67 22 4 0 0 0 0.031786 1 18856 18856 79.596 35.738 1 24474000 1893 6998 990 992 2220 2220 -0.024268155817367187 AEQFAITEA 9 Unmodified _AEQFAITEA_ 0 0 0 ENSG00000185519|ENST00000375662|FAM131C;ENST00000447882.1_1_1:16361675-16363149:-|nuORF ENSG00000185519|ENST00000375662|FAM131C ENSG00000185519|ENST00000375662|FAM131C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2736511230469 2 490.24019 978.465826 0.20742 0.00010169 -0.024104 -1.1817E-05 0.18332 8.987E-05 490.24012948975206 96.172 0.90509 91.937 91.5 92.405 -4.2348 72 25 4 0 0 0 0.031786 3 18346 18297;18299;18346 79.596 31.333 1 23123000 1894 6998 990 992 2221;2222;2223 2223 -0.024268155817367187 AEQFAITEA 9 Unmodified _AEQFAITEA_ 0 0 0 ENSG00000185519|ENST00000375662|FAM131C;ENST00000447882.1_1_1:16361675-16363149:-|nuORF ENSG00000185519|ENST00000375662|FAM131C ENSG00000185519|ENST00000375662|FAM131C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2641296386719 2 490.24019 978.465826 -0.26029 -0.0001276 0.40462 0.00019836 0.14433 7.0755E-05 490.240333712742 95.819 0.96523 91.938 91.545 92.51 -3.881 77 27 4 0 0 0 0.063365 1 18336 18336 66.457 7.7779 1 25372000 1895 6998 990 992 2224 2224 -0.024268155817367187 AEQFLQQFQ 9 Unmodified _AEQFLQQFQ_ 0 0 0 REV__ENSG00000247626|ENST00000282276|MARS2 REV__ENSG00000247626|ENST00000282276|MARS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20513916015625 3 380.189101 1137.54547 0.26443 0.00010053 -0.69647 -0.00026479 -0.43204 -0.00016426 380.18893124877314 30.289 1.0462 28.173 27.599 28.645 -2.1167 114 29 7 0 0 0 0.6797 1 5427 5427 7.609 2.2062 1 117460000 + 1896 19814 991 993 2225 2225 -0.017797489077111095 AEQFLQQFQ 9 Unmodified _AEQFLQQFQ_ 0 0 0 REV__ENSG00000247626|ENST00000282276|MARS2 REV__ENSG00000247626|ENST00000282276|MARS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 380.189101 1137.54547 -0.087926 -3.3428E-05 -0.27085 -0.00010297 -0.35878 -0.0001364 380.1890919780215 28.095 0.76021 28.095 27.801 28.561 0 -0.070263 0.00027421 NaN 7.609 80 21 5 NaN NaN NaN NaN 0 NaN NaN 0 124830000 + 1897 19814 991 993 -0.017797489077111095 AEQFLQQFQ 9 Unmodified _AEQFLQQFQ_ 0 0 0 REV__ENSG00000247626|ENST00000282276|MARS2 REV__ENSG00000247626|ENST00000282276|MARS2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.189101 1137.54547 0.33577 0.00012766 -0.80151 -0.00030472 -0.46574 -0.00017707 380.1889519317364 30.117 1.1196 28.224 27.685 28.805 -1.8928 0.059324 -0.00033104 NaN 7.609 103 31 6 NaN NaN NaN NaN 0 NaN NaN 0 128850000 + 1898 19814 991 993 -0.017797489077111095 AEQFLQQFQ 9 Unmodified _AEQFLQQFQ_ 0 0 0 REV__ENSG00000247626|ENST00000282276|MARS2 REV__ENSG00000247626|ENST00000282276|MARS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 380.189101 1137.54547 -0.12883 -4.8978E-05 -0.35459 -0.00013481 -0.48342 -0.00018379 380.18911892173656 30.242 1.3325 28.168 27.624 28.956 -2.0743 0.0032119 0.00017869 NaN 7.609 125 37 6 NaN NaN NaN NaN 0 NaN NaN 0 113140000 + 1899 19814 991 993 -0.017797489077111095 AEQFRALQ 8 Unmodified _AEQFRALQ_ 0 0 0 REV__nc|ENSG00000188747|Q86UR1-3|NOXA1 REV__nc|ENSG00000188747|Q86UR1-3|NOXA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78802490234375 2 481.756341 961.498129 0.13702 6.601E-05 -0.044844 -2.1604E-05 0.092174 4.4406E-05 481.75624997986426 62.294 1.0728 59.054 58.554 59.627 -3.2395 90 30 4 0 0 0 0.5707 1 11598 11598 24.021 0.23079 1 25796000 + 1900 19167 992 994 2226 2226 0.015840166119460264 AEQFRSYSES 10 Unmodified _AEQFRSYSES_ 0 0 0 nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2819213867188 2 602.267467 1202.52038 0.67227 0.00040489 2.6755 0.0016114 3.3478 0.0020163 602.2687200707279 44.476 0.5201 44.476 44.222 44.742 0 24 14 2 0 0 0 0.51622 1 8328 8328 23.79 0 1 2342300 1901 7827 993 995 2227 2227 -0.07277848500962136 AEQFRSYSES 10 Unmodified _AEQFRSYSES_ 0 0 0 nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 602.267467 1202.52038 0.95624 0.00057591 1.8493 0.0011138 2.8055 0.0016897 602.2685949306466 47.396 0.5578 44.527 44.251 44.809 -2.869 -0.026813 -0.00081223 NaN 23.79 38 15 4 NaN NaN NaN NaN 0 NaN NaN 0 4538900 1902 7827 993 995 -0.07277848500962136 AEQFRSYSES 10 Unmodified _AEQFRSYSES_ 0 0 0 nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 602.267467 1202.52038 0.35276 0.00021246 2.6395 0.0015897 2.9923 0.0018022 602.2690438290879 47.568 0.44758 44.626 44.376 44.824 -2.9421 0.072472 0.00013968 NaN 23.79 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3316200 1903 7827 993 995 -0.07277848500962136 AEQFRSYSES 10 Unmodified _AEQFRSYSES_ 0 0 0 nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 602.267467 1202.52038 -0.010639 -6.4073E-06 2.9125 0.0017541 2.9018 0.0017477 602.2692622499435 47.535 0.51405 44.585 44.33 44.844 -2.9499 0.031405 0.00046841 NaN 23.79 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3175700 1904 7827 993 995 -0.07277848500962136 AEQFSSLTP 9 Unmodified _AEQFSSLTP_ 0 0 0 ENST00000366535.3_1_1:244615028-244615205:-|nuORF ENST00000366535.3_1_1:244615028-244615205:-|nuORF ENST00000366535.3_1_1:244615028-244615205:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2649230957031 2 490.24019 978.465826 -0.014246 -6.9841E-06 0.26716 0.00013097 0.25291 0.00012399 490.24026679994375 94.945 1.3145 94.945 94.244 95.558 0 126 37 4 0 0 0 0.03916 3 18670 18495;18670;18673 54.068 28.238 1 43383000 1905 9043 994 996 2228;2229;2230 2229 -0.024268155817139814 AEQFSSLTP 9 Unmodified _AEQFSSLTP_ 0 0 0 ENST00000366535.3_1_1:244615028-244615205:-|nuORF ENST00000366535.3_1_1:244615028-244615205:-|nuORF ENST00000366535.3_1_1:244615028-244615205:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2640686035156 2 490.24019 978.465826 -0.065415 -3.2069E-05 0.16551 8.1142E-05 0.1001 4.9073E-05 490.24021175292194 99.047 1.429 95.091 94.332 95.761 -3.9564 133 41 4 0 0 0 0.43219 1 18902 18902 23.79 2.2528 1 44932000 1906 9043 994 996 2231 2231 -0.024268155817139814 AEQGAAFES 9 Unmodified _AEQGAAFES_ 0 0 0 REV__ENSG00000130950|ENST00000253262|NUTM2F REV__ENSG00000130950|ENST00000253262|NUTM2F MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.397216796875 1 909.394852 908.387576 -0.14267 -0.00012974 0.40087 0.00036455 0.25821 0.00023481 909.3951347648392 38.162 0.76115 35.693 35.297 36.058 -2.4688 39 21 2 0 0 0 0.48644 1 7012 7012 20.454 0 1 4626600 + 1907 16041 995 997 2232 2232 -0.0702824816694374 AEQGNLEI 8 Unmodified _AEQGNLEI_ 0 0 0 KIDINS220|p.T654Hfs*34|1|0.2|ENSG00000134313|chr2:8786010-8786010|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-3|KIDINS220;KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant;KIDINS220|p.R1551Efs*38|1|0.08|ENSG00000134313|chr2:8731386-8731386|C/-|frameshift_variant;KIDINS220|p.K1581Rfs*8|1|0.28|ENSG00000134313|chr2:8731294-8731294|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220 KIDINS220|p.T654Hfs*34|1|0.2|ENSG00000134313|chr2:8786010-8786010|T/-|frameshift_variant KIDINS220|p.T654Hfs*34|1|0.2|ENSG00000134313|chr2:8786010-8786010|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21734619140625 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 52.432 1 49.549 49.049 50.049 -2.8827 0 0 0 0.21039 1 9975 9975 16.942 0 1 1908 3844 996 998 2233 2233 -0.017353712702515622 AEQGPILTKH 10 Unmodified _AEQGPILTKH_ 0 0 0 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7846069335938 2 547.303655 1092.59276 1.0048 0.00054993 -0.21023 -0.00011506 0.79458 0.00043487 547.3033635386024 28.199 0.34598 26.243 26.053 26.399 -1.9561 14 9 2 0 0 0 0.40156 1 5019 5019 30.703 13.591 1 917210 1909 12314 997 999 2234 2234 0.05016530363241145 AEQGPILTKH 10 Unmodified _AEQGPILTKH_ 0 0 0 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7672729492188 2 547.303655 1092.59276 0.27696 0.00015158 0.77002 0.00042143 1.047 0.00057302 547.3039320957146 28.057 0.39135 26.302 26.14 26.531 -1.7552 15 10 2 0 0 0 0.20076 2 4717 4707;4717 44.392 22.855 1 1142300 1910 12314 997 999 2235;2236 2236 0.05016530363241145 AEQGPILTKH 10 Unmodified _AEQGPILTKH_ 0 0 0 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 547.303655 1092.59276 0.37099 0.00020304 0.7603 0.00041612 1.1313 0.00061916 547.3038880422353 28.239 0.31522 26.243 26.099 26.414 -1.9962 -0.019677 0.00033551 NaN 44.392 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 586770 1911 12314 997 999 0.05016530363241145 AEQGYRPKP 9 Unmodified _AEQGYRPKP_ 0 0 0 ENSG00000139437|ENST00000405876|TCHP;ENST00000537880.1_1_12:110353099-110354425:+|nuORF;ENST00000551627.1_1_12:110350781-110354425:+|nuORF ENSG00000139437|ENST00000405876|TCHP ENSG00000139437|ENST00000405876|TCHP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6986083984375 2 523.274898 1044.53524 -1.1388 -0.0005959 1.6979 0.00088845 0.55907 0.00029255 523.7773148181698 18.251 0.55087 16.737 16.435 16.986 -1.5148 34 15 3 0 0 0 0.43219 1 2683 2683 23.79 7.6407 1 947940 1912 4247 998 1000 2237 2237 0.014756881576886371 AEQGYRPKP 9 Unmodified _AEQGYRPKP_ 0 0 0 ENSG00000139437|ENST00000405876|TCHP;ENST00000537880.1_1_12:110353099-110354425:+|nuORF;ENST00000551627.1_1_12:110350781-110354425:+|nuORF ENSG00000139437|ENST00000405876|TCHP ENSG00000139437|ENST00000405876|TCHP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.274898 1044.53524 -0.29211 -0.00015286 0.91798 0.00048035 0.62586 0.0003275 523.776927939831 18.103 0.49084 16.792 16.511 17.002 -1.3109 0.028516 -0.00041772 NaN 23.79 32 13 4 NaN NaN NaN NaN 0 NaN NaN 0 939520 1913 4247 998 1000 0.014756881576886371 AEQGYRPKP 9 Unmodified _AEQGYRPKP_ 0 0 0 ENSG00000139437|ENST00000405876|TCHP;ENST00000537880.1_1_12:110353099-110354425:+|nuORF;ENST00000551627.1_1_12:110350781-110354425:+|nuORF ENSG00000139437|ENST00000405876|TCHP ENSG00000139437|ENST00000405876|TCHP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.274898 1044.53524 -0.98475 -0.00051529 1.4614 0.00076473 0.47668 0.00024943 523.2752123247014 18.034 0.44323 16.762 16.52 16.964 -1.2722 -0.0015309 0.00015102 NaN 23.79 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1370500 1914 4247 998 1000 0.014756881576886371 AEQIKHILA 9 Unmodified _AEQIKHILA_ 0 0 0 ENSG00000133112|ENST00000530705|TPT1;nc|ENSG00000133112|P13693-2|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF ENSG00000133112|ENST00000530705|TPT1 ENSG00000133112|ENST00000530705|TPT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.53985595703125 3 341.537953 1021.59203 -0.085256 -2.9118E-05 -0.17247 -5.8906E-05 -0.25773 -8.8024E-05 341.5378894020256 48.754 1.1266 48.754 48.244 49.37 0 108 31 5 0 0 0 0.5428 1 9275 9275 10.016 5.1193 1 116950000 1915 3785 999 1001 2238 2238 0.08209735714217459 AEQIKHILA 9 Unmodified _AEQIKHILA_ 0 0 0 ENSG00000133112|ENST00000530705|TPT1;nc|ENSG00000133112|P13693-2|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF ENSG00000133112|ENST00000530705|TPT1 ENSG00000133112|ENST00000530705|TPT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.86932373046875 3 341.537953 1021.59203 -0.43806 -0.00014961 0.13103 4.475E-05 -0.30703 -0.00010486 341.53802667489884 51.306 1.1763 48.424 47.927 49.103 -2.8824 116 33 5 0 0 0 0.25976 1 9726 9726 22.621 10.38 1 207850000 1916 3785 999 1001 2239 2239 0.08209735714217459 AEQIKHILA 9 Unmodified _AEQIKHILA_ 0 0 0 ENSG00000133112|ENST00000530705|TPT1;nc|ENSG00000133112|P13693-2|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF ENSG00000133112|ENST00000530705|TPT1 ENSG00000133112|ENST00000530705|TPT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.2063293457031 3 341.537953 1021.59203 -0.74649 -0.00025496 0.41388 0.00014135 -0.33262 -0.0001136 341.53810912086163 51.45 1.4939 48.398 47.854 49.348 -3.0517 122 42 4 0 0 0 0.15889 1 9407 9407 22.736 10.496 1 157080000 1917 3785 999 1001 2240 2240 0.08209735714217459 AEQIKHILA 9 Unmodified _AEQIKHILA_ 0 0 0 ENSG00000133112|ENST00000530705|TPT1;nc|ENSG00000133112|P13693-2|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF ENSG00000133112|ENST00000530705|TPT1 ENSG00000133112|ENST00000530705|TPT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 341.537953 1021.59203 0.046456 1.5866E-05 -0.3685 -0.00012586 -0.32204 -0.00010999 341.5378560565925 51.466 1.2325 48.42 47.909 49.141 -3.0453 -0.078474 -0.00036105 NaN 22.736 126 34 6 NaN NaN NaN NaN 0 NaN NaN 0 179230000 1918 3785 999 1001 0.08209735714217459 AEQILEDVVQA 11 Unmodified _AEQILEDVVQA_ 0 0 0 REV__ENSG00000160294|ENST00000291688|MCM3AP REV__ENSG00000160294|ENST00000291688|MCM3AP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3152770996094 3 405.546954 1213.61903 NaN NaN NaN NaN NaN NaN NaN 49.864 1 46.982 46.482 47.482 -2.8811 0 0 0 0.23698 1 9451 9451 2.4348 0 1 + 1919 17413 1000 1002 2241 2241 0.020767547440982526 AEQILQHMV 9 Oxidation (M) _AEQILQHM(Oxidation (M))V_ AEQILQHM(1)V AEQILQHM(50)V 0 0 1 ENSG00000166233|ENST00000379887|ARIH1;ENST00000567762.1_1_15:72767286-72810465:+|nuORF ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7786254882812 2 542.776416 1083.53828 0.029881 1.6219E-05 0.37179 0.0002018 0.40168 0.00021802 542.7762892444662 60.417 0.70076 60.417 60.102 60.802 0 50 19 4 0 0 0 0.11717 1 11598 11598 49.933 28.186 1 7528800 1920 5706 1001 1003 2242 2242 87 -0.00014804779789301392 AEQINEHVSGP 11 Unmodified _AEQINEHVSGP_ 0 0 0 ENST00000468692.1_1_1:111730229-111731929:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D ENST00000468692.1_1_1:111730229-111731929:-|nuORF ENST00000468692.1_1_1:111730229-111731929:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2486572265625 2 590.783284 1179.55202 0.68361 0.00040387 -0.262 -0.00015479 0.42161 0.00024908 590.7831116682678 31.985 1.0558 29.958 29.444 30.5 -2.0264 101 29 5 0 0 0 0.07652 1 5568 5568 70.332 3.8753 1 42265000 1921 5369 1002 1004 2243 2243 -0.030578557470107626 AEQINEHVSGP 11 Unmodified _AEQINEHVSGP_ 0 0 0 ENST00000468692.1_1_1:111730229-111731929:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D ENST00000468692.1_1_1:111730229-111731929:-|nuORF ENST00000468692.1_1_1:111730229-111731929:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.258544921875 2 590.783284 1179.55202 0.4779 0.00028234 -0.14061 -8.3071E-05 0.33729 0.00019927 590.7831901111444 32.165 1.1115 30.016 29.479 30.59 -2.1483 106 31 5 0 0 0 0.27618 1 5518 5518 41.956 3.78 1 36320000 1922 5369 1002 1004 2244 2244 -0.030578557470107626 AEQINEHVSGP 11 Unmodified _AEQINEHVSGP_ 0 0 0 ENST00000468692.1_1_1:111730229-111731929:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D ENST00000468692.1_1_1:111730229-111731929:-|nuORF ENST00000468692.1_1_1:111730229-111731929:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 590.783284 1179.55202 0.68894 0.00040701 -0.28932 -0.00017093 0.39961 0.00023608 590.7831070830343 32.156 0.91974 29.925 29.446 30.366 -2.2305 -0.013268 -9.5608E-05 NaN 70.332 93 25 5 NaN NaN NaN NaN 0 NaN NaN 0 43544000 1923 5369 1002 1004 -0.030578557470107626 AEQIVCEMGEA 11 Unmodified _AEQIVCEMGEA_ 0 0 0 PLXNA4|p.M966Cfs*7|1|0.29|ENSG00000221866|chr7:132187572-132187572|C/-|frameshift_variant;PLXNA4|p.T1063Pfs*27|1|0.32|ENSG00000221866|chr7:132182163-132182163|C/-|frameshift_variant;PLXNA4|p.G1175Afs*3|1|0.21|ENSG00000221866|chr7:132180701-132180701|C/-|frameshift_variant;ENSG00000221866|ENST00000321063|PLXNA4 PLXNA4|p.M966Cfs*7|1|0.29|ENSG00000221866|chr7:132187572-132187572|C/-|frameshift_variant PLXNA4|p.M966Cfs*7|1|0.29|ENSG00000221866|chr7:132187572-132187572|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2561645507812 2 590.254656 1178.49476 NaN NaN NaN NaN NaN NaN NaN 42.373 1 39.654 39.154 40.154 -2.7191 0 0 0 0.23018 1 7925 7925 8.1555 0.54658 1 1924 7761 1003 1005 2245 2245 -0.08734782339229241 AEQIVPLSA 9 Unmodified _AEQIVPLSA_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ENST00000507620.2_1_3:142215312-142218583:-|nuORF nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2553405761719 2 464.260925 926.507297 -0.15726 -7.3009E-05 0.23217 0.00010779 0.074917 3.4781E-05 464.2609884920101 111.06 1.4432 106.57 106.18 107.62 -4.4915 83 40 4 0 0 0 0.46882 1 21371 21371 21.537 3.3906 1 10917000 1925 6383 1004 1006 2246 2246 0.04110365177598396 AEQKAIIRV 9 Unmodified _AEQKAIIRV_ 0 0 0 nc|ENSG00000108375|Q68DV7-4|RNF43;RNF43|p.G659Vfs*41|19|0.36|ENSG00000108375|chr17:58357800-58357800|C/-|frameshift_variant;RNF43|p.A629Pfs*71|1|0.56|ENSG00000108375|chr17:58357891-58357891|C/-|frameshift_variant;nc|ENSG00000108375|Q68DV7-2|RNF43;ENSG00000108375|ENST00000407977|RNF43;chr17:58415759-58417017|443|15.45|0.8|4.27|-|ENST00000577716|RNF43,RNF43;RNF43|p.H295Ifs*124|1|0.71|ENSG00000108375|chr17:58360218-58360218|G/-|frameshift_variant;RNF43|p.P441Hfs*2|1|0.35|ENSG00000108375|chr17:58358454-58358455|-/T|frameshift_variant;RNF43|p.C119Lfs*6|1|0.32|ENSG00000108375|chr17:58370931-58370932|-/G|frameshift_variant;RNF43|p.R117Pfs*41|1|0.52|ENSG00000108375|chr17:58370936-58370936|C/-|frameshift_variant nc|ENSG00000108375|Q68DV7-4|RNF43 nc|ENSG00000108375|Q68DV7-4|RNF43 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.8818359375 3 343.213469 1026.61858 0.055932 1.9197E-05 -0.18284 -6.2755E-05 -0.12691 -4.3558E-05 343.2133655789658 53.334 0.74158 50.247 49.832 50.573 -3.0876 41 20 3 0 0 0 0.25976 1 9759 9759 17.572 9.4164 1 1935600 1926 12279 1005 1007 2247 2247 0.10633424605566688 AEQKAIIRV 9 Unmodified _AEQKAIIRV_ 0 0 0 nc|ENSG00000108375|Q68DV7-4|RNF43;RNF43|p.G659Vfs*41|19|0.36|ENSG00000108375|chr17:58357800-58357800|C/-|frameshift_variant;RNF43|p.A629Pfs*71|1|0.56|ENSG00000108375|chr17:58357891-58357891|C/-|frameshift_variant;nc|ENSG00000108375|Q68DV7-2|RNF43;ENSG00000108375|ENST00000407977|RNF43;chr17:58415759-58417017|443|15.45|0.8|4.27|-|ENST00000577716|RNF43,RNF43;RNF43|p.H295Ifs*124|1|0.71|ENSG00000108375|chr17:58360218-58360218|G/-|frameshift_variant;RNF43|p.P441Hfs*2|1|0.35|ENSG00000108375|chr17:58358454-58358455|-/T|frameshift_variant;RNF43|p.C119Lfs*6|1|0.32|ENSG00000108375|chr17:58370931-58370932|-/G|frameshift_variant;RNF43|p.R117Pfs*41|1|0.52|ENSG00000108375|chr17:58370936-58370936|C/-|frameshift_variant nc|ENSG00000108375|Q68DV7-4|RNF43 nc|ENSG00000108375|Q68DV7-4|RNF43 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 343.213469 1026.61858 -0.1792 -6.1505E-05 0.21373 7.3356E-05 0.034528 1.1851E-05 343.2134760208563 50.601 0.71652 50.601 50.095 50.812 0 0.22894 -2.0948E-06 NaN 17.572 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2690200 1927 12279 1005 1007 0.10633424605566688 AEQKAIIRV 9 Unmodified _AEQKAIIRV_ 0 0 0 nc|ENSG00000108375|Q68DV7-4|RNF43;RNF43|p.G659Vfs*41|19|0.36|ENSG00000108375|chr17:58357800-58357800|C/-|frameshift_variant;RNF43|p.A629Pfs*71|1|0.56|ENSG00000108375|chr17:58357891-58357891|C/-|frameshift_variant;nc|ENSG00000108375|Q68DV7-2|RNF43;ENSG00000108375|ENST00000407977|RNF43;chr17:58415759-58417017|443|15.45|0.8|4.27|-|ENST00000577716|RNF43,RNF43;RNF43|p.H295Ifs*124|1|0.71|ENSG00000108375|chr17:58360218-58360218|G/-|frameshift_variant;RNF43|p.P441Hfs*2|1|0.35|ENSG00000108375|chr17:58358454-58358455|-/T|frameshift_variant;RNF43|p.C119Lfs*6|1|0.32|ENSG00000108375|chr17:58370931-58370932|-/G|frameshift_variant;RNF43|p.R117Pfs*41|1|0.52|ENSG00000108375|chr17:58370936-58370936|C/-|frameshift_variant nc|ENSG00000108375|Q68DV7-4|RNF43 nc|ENSG00000108375|Q68DV7-4|RNF43 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 343.213469 1026.61858 -0.7321 -0.00025126 0.55321 0.00018987 -0.17888 -6.1395E-05 343.21365278527986 53.364 0.5099 50.269 49.967 50.477 -3.0954 -0.10345 0.00034745 NaN 17.572 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2236000 1928 12279 1005 1007 0.10633424605566688 AEQKAIIRVI 10 Unmodified _AEQKAIIRVI_ 0 0 0 nc|ENSG00000108375|Q68DV7-4|RNF43;RNF43|p.G659Vfs*41|19|0.36|ENSG00000108375|chr17:58357800-58357800|C/-|frameshift_variant;RNF43|p.A629Pfs*71|1|0.56|ENSG00000108375|chr17:58357891-58357891|C/-|frameshift_variant;nc|ENSG00000108375|Q68DV7-2|RNF43;ENSG00000108375|ENST00000407977|RNF43;chr17:58415759-58417017|443|15.45|0.8|4.27|-|ENST00000577716|RNF43,RNF43;RNF43|p.H295Ifs*124|1|0.71|ENSG00000108375|chr17:58360218-58360218|G/-|frameshift_variant;RNF43|p.P441Hfs*2|1|0.35|ENSG00000108375|chr17:58358454-58358455|-/T|frameshift_variant;RNF43|p.C119Lfs*6|1|0.32|ENSG00000108375|chr17:58370931-58370932|-/G|frameshift_variant;RNF43|p.R117Pfs*41|1|0.52|ENSG00000108375|chr17:58370936-58370936|C/-|frameshift_variant nc|ENSG00000108375|Q68DV7-4|RNF43 nc|ENSG00000108375|Q68DV7-4|RNF43 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2106628417969 3 380.908157 1139.70264 -0.52377 -0.00019951 0.3728 0.000142 -0.15097 -5.7507E-05 380.9082747490768 87.546 0.53098 83.796 83.588 84.118 -3.7501 17 14 2 0 0 0 0.91052 1 16743 16743 7.0371 0.41363 1 826100 1929 12279 1006 1008 2248 2248 0.13837955702456384 AEQKDEMVP 9 Unmodified _AEQKDEMVP_ 0 0 0 RCC2|p.R374C|2|0.24|ENSG00000179051|chr1:17413624-17413624|G/A|missense_variant;RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant;ENSG00000179051|ENST00000375436|RCC2 RCC2|p.R374C|2|0.24|ENSG00000179051|chr1:17413624-17413624|G/A|missense_variant RCC2|p.R374C|2|0.24|ENSG00000179051|chr1:17413624-17413624|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6845092773438 2 523.744782 1045.47501 0.12094 6.3344E-05 0.010038 5.2576E-06 0.13098 6.8601E-05 523.7447497192526 40.991 0.67124 38.501 38.182 38.853 -2.4896 45 18 3 0 0 0 0.73481 1 7322 7322 24.991 12.459 1 4791200 1930 6605 1007 1009 2249 2249 -0.04590790287670643 AEQKIGKR 8 Unmodified _AEQKIGKR_ 0 0 0 REV__ENSG00000083782|ENST00000261172|EPYC REV__ENSG00000083782|ENST00000261172|EPYC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2502746582031 2 465.279983 928.545414 NaN NaN NaN NaN NaN NaN NaN 76.171 1 72.448 71.948 72.948 -3.7227 0 0 0 0.21486 1 14417 14417 8.5933 0 1 + 1931 14457 1008 1010 2250 2250 0.07828295882950442 AEQKLQMAY 9 Unmodified _AEQKLQMAY_ 0 0 0 REV__nc|ENSG00000167881|Q9UHB9-4|SRP68 REV__nc|ENSG00000167881|Q9UHB9-4|SRP68 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2744750976562 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 67.959 1 64.632 64.132 65.132 -3.3268 0 0 0 0.20155 1 12823 12823 23.148 2.6948 1 + 1932 17977 1009 1011 2251 2251 -0.009662071540560646 AEQKRDIQL 9 Unmodified _AEQKRDIQL_ 0 0 0 nc|ENSG00000181852|Q9H4P4-2|RNF41;RNF41|p.C291Lfs*2|1|0.06|ENSG00000181852|chr12:56206531-56206532|-/A|frameshift_variant;ENSG00000181852|ENST00000345093|RNF41 nc|ENSG00000181852|Q9H4P4-2|RNF41 nc|ENSG00000181852|Q9H4P4-2|RNF41 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.8333740234375 3 367.540134 1099.59857 -0.47065 -0.00017298 0.26043 9.5717E-05 -0.21022 -7.7264E-05 367.5403028033553 37.734 0.86212 35.397 34.774 35.636 -2.3375 42 24 3 0 0 0 0.10782 1 6698 6698 37.075 17.713 1 2309500 1933 6751 1010 1012 2252 2252 0.052756288749378655 AEQKRDIQL 9 Unmodified _AEQKRDIQL_ 0 0 0 nc|ENSG00000181852|Q9H4P4-2|RNF41;RNF41|p.C291Lfs*2|1|0.06|ENSG00000181852|chr12:56206531-56206532|-/A|frameshift_variant;ENSG00000181852|ENST00000345093|RNF41 nc|ENSG00000181852|Q9H4P4-2|RNF41 nc|ENSG00000181852|Q9H4P4-2|RNF41 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 367.540134 1099.59857 -0.18292 -6.7231E-05 0.10706 3.9349E-05 -0.075862 -2.7882E-05 367.5401887685858 35.602 0.65154 35.602 35.238 35.889 0 0.1659 0.00011707 NaN 37.075 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2144500 1934 6751 1010 1012 0.052756288749378655 AEQKRDIQL 9 Unmodified _AEQKRDIQL_ 0 0 0 nc|ENSG00000181852|Q9H4P4-2|RNF41;RNF41|p.C291Lfs*2|1|0.06|ENSG00000181852|chr12:56206531-56206532|-/A|frameshift_variant;ENSG00000181852|ENST00000345093|RNF41 nc|ENSG00000181852|Q9H4P4-2|RNF41 nc|ENSG00000181852|Q9H4P4-2|RNF41 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 367.540134 1099.59857 -0.60902 -0.00022384 0.39227 0.00014417 -0.21675 -7.9664E-05 367.54028203152336 37.819 0.62434 35.35 34.985 35.609 -2.4688 -0.08628 0.00043155 NaN 37.075 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4020200 1935 6751 1010 1012 0.052756288749378655 AEQKRDIQL 9 Unmodified _AEQKRDIQL_ 0 0 0 nc|ENSG00000181852|Q9H4P4-2|RNF41;RNF41|p.C291Lfs*2|1|0.06|ENSG00000181852|chr12:56206531-56206532|-/A|frameshift_variant;ENSG00000181852|ENST00000345093|RNF41 nc|ENSG00000181852|Q9H4P4-2|RNF41 nc|ENSG00000181852|Q9H4P4-2|RNF41 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 367.540134 1099.59857 0.080992 2.9768E-05 -0.56619 -0.0002081 -0.48519 -0.00017833 367.53990649890017 37.744 0.55579 35.396 35.132 35.688 -2.3479 -0.040075 -0.00062526 NaN 37.075 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3377800 1936 6751 1010 1012 0.052756288749378655 AEQLAEKINA 10 Unmodified _AEQLAEKINA_ 0 0 0 nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46 nc|ENSG00000145833|Q7L014|DDX46 nc|ENSG00000145833|Q7L014|DDX46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79296875 2 543.793121 1085.57169 0.44878 0.00024405 -0.5473 -0.00029762 -0.098517 -5.3573E-05 543.7928394754787 51.568 1.0498 51.568 50.848 51.898 0 41 29 2 0 0 0 6.5895E-18 5 9803 9706;9752;9803;9832;9847 173.14 87.497 1 6356100 1937 4624 1011 1013 2253;2254;2255;2256;2257 2255 0.032325202637593975 AEQLAEKINA 10 Unmodified _AEQLAEKINA_ 0 0 0 nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46 nc|ENSG00000145833|Q7L014|DDX46 nc|ENSG00000145833|Q7L014|DDX46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7815551757812 2 543.793121 1085.57169 -0.011921 -6.4827E-06 -0.42245 -0.00022973 -0.43437 -0.00023621 543.7930782864225 54.183 0.83156 51.299 50.769 51.601 -2.8837 41 23 2 0 0 0 3.6312E-33 6 10369 10249;10299;10344;10367;10369;10393 185.27 95.137 1 7819400 1938 4624 1011 1013 2258;2259;2260;2261;2262;2263 2262 0.032325202637593975 AEQLAEKINA 10 Unmodified _AEQLAEKINA_ 0 0 0 nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46 nc|ENSG00000145833|Q7L014|DDX46 nc|ENSG00000145833|Q7L014|DDX46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7931518554688 2 543.793121 1085.57169 0.077498 4.2143E-05 -0.42246 -0.00022973 -0.34496 -0.00018759 543.7930694428943 54.621 0.67112 51.486 51.114 51.785 -3.1352 34 18 3 0 0 0 6.5895E-18 3 10075 10022;10075;10127 173.14 88.616 1 13640000 1939 4624 1011 1013 2264;2265;2266 2265 0.032325202637593975 AEQLAEKINA 10 Unmodified _AEQLAEKINA_ 0 0 0 nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46 nc|ENSG00000145833|Q7L014|DDX46 nc|ENSG00000145833|Q7L014|DDX46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7932739257812 2 543.793121 1085.57169 0.04871 2.6488E-05 -0.30644 -0.00016664 -0.25773 -0.00014015 543.793009113138 54.545 0.76821 51.407 51.064 51.833 -3.1377 42 21 3 0 0 0 3.6312E-33 3 10104 10060;10104;10149 185.27 91.334 1 7761700 1940 4624 1011 1013 2267;2268;2269 2268 0.032325202637593975 AEQLAMVAS 9 Unmodified _AEQLAMVAS_ 0 0 0 REV__nc|ENSG00000273213|Q5TEC6|H3-7 REV__nc|ENSG00000273213|Q5TEC6|H3-7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2318115234375 2 460.23131 918.448068 -0.097461 -4.4854E-05 -1.0588 -0.00048729 -1.1562 -0.00053214 460.2311947013164 41.509 0.55413 38.858 38.549 39.103 -2.651 24 15 2 0 0 0 0.60061 1 7397 7397 13.042 1.4022 1 762440 + 1941 18001 1012 1014 2270 2270 -0.014418541082136471 AEQLAMVAS 9 Unmodified _AEQLAMVAS_ 0 0 0 REV__nc|ENSG00000273213|Q5TEC6|H3-7 REV__nc|ENSG00000273213|Q5TEC6|H3-7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23248291015625 2 460.23131 918.448068 0.044498 2.0479E-05 -1.3088 -0.00060236 -1.2643 -0.00058188 460.23120567143434 41.462 0.63261 38.973 38.635 39.268 -2.4896 26 17 2 0 0 0 0.54076 1 7392 7392 17.113 0.1706 1 749690 + 1942 18001 1012 1014 2271 2271 -0.014418541082136471 AEQLAQIAA 9 Unmodified _AEQLAQIAA_ 0 0 0 nc|ENSG00000141522|P52565-2|ARHGDIA;ENSG00000141522|ENST00000269321|ARHGDIA nc|ENSG00000141522|P52565-2|ARHGDIA nc|ENSG00000141522|P52565-2|ARHGDIA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2239685058594 2 457.750724 913.486896 0.56207 0.00025729 -0.27767 -0.0001271 0.2844 0.00013018 457.7505550794803 77.203 0.97665 77.203 76.658 77.634 0 65 27 3 0 0 0 0.067911 1 14981 14981 67.187 49.18 1 15229000 1943 4377 1013 1015 2272 2272 0.026691945178072274 AEQLAQIAA 9 Unmodified _AEQLAQIAA_ 0 0 0 nc|ENSG00000141522|P52565-2|ARHGDIA;ENSG00000141522|ENST00000269321|ARHGDIA nc|ENSG00000141522|P52565-2|ARHGDIA nc|ENSG00000141522|P52565-2|ARHGDIA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2333068847656 2 457.750724 913.486896 -0.075151 -3.44E-05 0.29776 0.0001363 0.22261 0.0001019 457.7508141227856 80.638 1.1546 77.081 76.602 77.757 -3.557 70 32 3 0 0 0 0.041967 2 15783 15783;15787 67.187 40.192 1 14392000 1944 4377 1013 1015 2273;2274 2273 0.026691945178072274 AEQLAQIAA 9 Unmodified _AEQLAQIAA_ 0 0 0 nc|ENSG00000141522|P52565-2|ARHGDIA;ENSG00000141522|ENST00000269321|ARHGDIA nc|ENSG00000141522|P52565-2|ARHGDIA nc|ENSG00000141522|P52565-2|ARHGDIA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2268981933594 2 457.750724 913.486896 -0.051629 -2.3633E-05 0.33131 0.00015166 0.27969 0.00012803 457.7508179373938 80.999 1.0511 77.159 76.698 77.749 -3.8392 76 29 4 0 0 0 0.036303 2 15421 15421;15464 74.216 31.983 1 11442000 1945 4377 1013 1015 2275;2276 2275 0.026691945178072274 AEQLAQIAA 9 Unmodified _AEQLAQIAA_ 0 0 0 nc|ENSG00000141522|P52565-2|ARHGDIA;ENSG00000141522|ENST00000269321|ARHGDIA nc|ENSG00000141522|P52565-2|ARHGDIA nc|ENSG00000141522|P52565-2|ARHGDIA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2387390136719 2 457.750724 913.486896 -0.2118 -9.6953E-05 0.45696 0.00020917 0.24515 0.00011222 457.75087266171806 80.88 1.0126 77.192 76.719 77.732 -3.6879 71 28 3 0 0 0 0.029716 3 15474 15385;15474;15502 81.89 36.061 1 13817000 1946 4377 1013 1015 2277;2278;2279 2278 0.026691945178072274 AEQLDQEP 8 Unmodified _AEQLDQEP_ 0 0 0 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2576599121094 2 465.214172 928.413791 NaN NaN NaN NaN NaN NaN NaN 47.755 1 47.755 47.255 48.255 0 0 0 0 0.21171 1 9009 9009 15.847 1.9411 1 + 1947 18324 1014 1016 2280 2280 -0.053279789954672196 AEQLENIG 8 Unmodified _AEQLENIG_ 0 0 0 ENST00000566201.6_1_16:46508202-46534771:-|nuORF ENST00000566201.6_1_16:46508202-46534771:-|nuORF ENST00000566201.6_1_16:46508202-46534771:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21893310546875 2 437.219257 872.423961 -0.48688 -0.00021287 0.5538 0.00024213 0.06692 2.9259E-05 437.2194805166386 35.743 1.1014 33.349 32.915 34.016 -2.3938 62 30 3 0 0 0 8448 1 6708 6708 3.5871 0 1 3754500 1948 11363 1015 1017 2281 2281 -0.017353712702401936 AEQLEVQI 8 Unmodified _AEQLEVQI_ 0 0 0 REV__ENSG00000213927|ENST00000259631|CCL27 REV__ENSG00000213927|ENST00000259631|CCL27 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2505798339844 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 112.57 1 108.04 107.54 108.54 -4.5259 0 0 0 0.17894 1 21607 21607 32.117 0 1 + 1949 19652 1016 1018 2282 2282 0.01945774797957256 AEQLEVQI 8 Unmodified _AEQLEVQI_ 0 0 0 REV__ENSG00000213927|ENST00000259631|CCL27 REV__ENSG00000213927|ENST00000259631|CCL27 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25079345703125 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 112.3 1 108.02 107.52 108.52 -4.2725 0 0 0 0.19954 1 21622 21622 24.674 0 1 + 1950 19652 1016 1018 2283 2283 0.01945774797957256 AEQLFLLTF 9 Unmodified _AEQLFLLTF_ 0 0 0 REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1 REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2761840820312 2 541.30005 1080.58555 NaN NaN NaN NaN NaN NaN NaN 70.575 1 67.108 66.608 67.608 -3.467 0 0 0 0.22621 1 13366 13366 15.847 5.7733 1 + 1951 19154 1017 1019 2284 2284 0.04847797762818118 AEQLGFLKG 9 Unmodified _AEQLGFLKG_ 0 0 0 REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1 REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76885986328125 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 33.781 1 31.566 31.066 32.066 -2.2158 0 0 0 0.23508 1 5900 5900 10.074 0 1 + 1952 15129 1018 1020 2285 2285 0.04098071414523474 AEQLHFWI 8 Unmodified _AEQLHFWI_ 0 0 0 REV__nc|ENSG00000131482|P35575-2|G6PC1 REV__nc|ENSG00000131482|P35575-2|G6PC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2798461914062 2 522.269084 1042.52362 -1.019 -0.00053221 0.87394 0.00045643 -0.14509 -7.5777E-05 522.2691353375973 19.43 0.59086 18.105 17.755 18.346 -1.3251 26 16 3 0 0 0 0.76728 1 3004 3004 5.7604 1.4312 1 2860700 + 1953 16078 1019 1021 2286 2286 0.004054911343473577 AEQLHNHL 8 Unmodified _AEQLHNHL_ 0 0 0 ENST00000498029.1_1_X:153648339-153649340:+|nuORF;nc|ENSG00000102125|Q16635-9|TAFAZZIN;nc|ENSG00000102125|Q16635-8|TAFAZZIN;nc|ENSG00000102125|Q16635-7|TAFAZZIN;nc|ENSG00000102125|Q16635-6|TAFAZZIN;nc|ENSG00000102125|Q16635|TAFAZZIN;nc|ENSG00000102125|Q16635-4|TAFAZZIN;nc|ENSG00000102125|Q16635-2|TAFAZZIN;nc|ENSG00000102125|Q16635-5|TAFAZZIN;ENSG00000102125|ENST00000601016|TAFAZZIN ENST00000498029.1_1_X:153648339-153649340:+|nuORF ENST00000498029.1_1_X:153648339-153649340:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23553466796875 2 481.246141 960.477728 0.0083109 3.9996E-06 -2.4955 -0.001201 -2.4872 -0.001197 481.24525748620704 67.196 0.73526 64.087 63.652 64.387 -3.1086 26 20 3 0 0 0 0.64227 1 12944 12944 19.439 3.5918 1 977240 1954 2111 1020 1022 2287 2287 -0.004091540478839306 AEQLLLQGG 9 Unmodified _AEQLLLQGG_ 0 0 0 REV__ENST00000524551.5_3_11:66512137-66526561:+|nuORF REV__ENST00000524551.5_3_11:66512137-66526561:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2392883300781 2 464.758549 927.502546 0.13784 6.4061E-05 -0.022256 -1.0344E-05 0.11558 5.3717E-05 464.75864739350766 34.854 0.48932 32.601 32.254 32.743 -2.2527 22 13 2 0 0 0 0.60061 1 6104 6104 13.042 0.80181 1 429840 + 1955 22673 1021 1023 2288 2288 0.03589481034862274 AEQLMTLISA 10 Oxidation (M) _AEQLM(Oxidation (M))TLISA_ AEQLM(1)TLISA AEQLM(50)TLISA 0 0 1 nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-2|OGA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7711181640625 2 546.783907 1091.55326 0.32282 0.00017651 -0.16099 -8.8027E-05 0.16183 8.8484E-05 546.7838445350909 119.56 0.86523 119.56 119.1 119.97 0 73 24 4 0 0 0 0.14114 2 23558 23550;23558 49.527 13.021 1 17896000 1956 7451 1022 1024 2289;2290 2290 100 0.011146422975571113 AEQLMTLISA 10 Oxidation (M) _AEQLM(Oxidation (M))TLISA_ 0 0 1 nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-2|OGA MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.783907 1091.55326 0.42662 0.00023327 -0.4744 -0.0002594 -0.04778 -2.6125E-05 546.7837373552683 124.32 0.74226 119.58 119.17 119.91 -4.7358 0.049746 -0.00022154 NaN 49.527 54 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6310600 1957 7451 1022 1024 100 0.011146422975571113 AEQLMTLISA 10 Oxidation (M) _AEQLM(Oxidation (M))TLISA_ 0 0 1 nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-2|OGA MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.783907 1091.55326 0.33332 0.00018225 -0.085285 -4.6632E-05 0.24804 0.00013562 546.7838870784548 124.13 1.0269 119.54 119.06 120.09 -4.5926 0.0115 0.00020399 NaN 49.527 67 28 3 NaN NaN NaN NaN 0 NaN NaN 0 12690000 1958 7451 1022 1024 100 0.011146422975571113 AEQLRQQRL 9 Unmodified _AEQLRQQRL_ 0 0 0 REV__nc|ENSG00000070182|P11277-3|SPTB REV__nc|ENSG00000070182|P11277-3|SPTB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2209777832031 3 381.219395 1140.63635 NaN NaN NaN NaN NaN NaN NaN 50.948 1 48.065 47.565 48.565 -2.8824 0 0 0 0.23508 1 9674 9674 2.7352 0.10396 1 + 1959 14252 1023 1025 2291 2291 0.07166139860419207 AEQLRWRRQ 9 Unmodified _AEQLRWRRQ_ 0 0 0 ENST00000505073.5_1_4:91048743-91048815:+|nuORF ENST00000505073.5_1_4:91048743-91048815:+|nuORF ENST00000505073.5_1_4:91048743-91048815:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7568969726562 2 621.844345 1241.67414 0.41034 0.00025517 -0.508 -0.0003159 -0.097664 -6.0732E-05 621.8440249078096 32.417 0.17091 32.417 32.296 32.467 0 6 4 2 0 0 0 0.67531 1 5862 5862 7.9102 2.1783 1 504600 1960 10667 1024 1026 2292 2292 0.0629665084586577 AEQLSGHHY 9 Unmodified _AEQLSGHHY_ 0 0 0 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2728271484375 2 521.241055 1040.46756 0.53838 0.00028063 -1.3089 -0.00068224 -0.7705 -0.00040161 521.2401083040756 31.595 0.63095 29.446 29.057 29.688 -2.1483 46 17 3 0 0 0 0.66316 1 5478 5478 8.7454 0.83525 1 2616900 + 1961 16743 1025 1027 2293 2293 -0.051057617730975835 AEQLSGHHY 9 Unmodified _AEQLSGHHY_ 0 0 0 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.241055 1040.46756 0.06345 3.3073E-05 -0.63878 -0.00033296 -0.57533 -0.00029989 521.240371233032 31.59 0.56053 29.359 28.99 29.551 -2.2305 -0.098406 0.00025423 NaN 8.7454 39 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2860400 + 1962 16743 1025 1027 -0.051057617730975835 AEQLSGHHY 9 Unmodified _AEQLSGHHY_ 0 0 0 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.241055 1040.46756 -0.42253 -0.00022024 -0.3478 -0.00018129 -0.77033 -0.00040153 521.240644476371 31.474 0.67075 29.447 29.093 29.764 -2.0264 -0.010162 0.00055758 NaN 8.7454 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2932800 + 1963 16743 1025 1027 -0.051057617730975835 AEQLSGHHY 9 Unmodified _AEQLSGHHY_ 0 0 0 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.241055 1040.46756 0.53838 0.00028063 -1.3089 -0.00068224 -0.7705 -0.00040161 521.2401083040756 31.595 0.63095 29.446 29.057 29.688 -2.1483 -0.011249 -0.00044433 NaN 8.7454 46 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2616900 + 1964 16743 1025 1027 -0.051057617730975835 AEQLTTTVSH 10 Unmodified _AEQLTTTVSH_ 0 0 0 REV__ENST00000585361.5_1_17:42153417-42153507:+|nuORF REV__ENST00000585361.5_1_17:42153417-42153507:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7789306640625 2 543.774928 1085.5353 0.5808 0.00031582 0.38887 0.00021146 0.96967 0.00052728 544.2751144150842 102.11 1.2848 98.088 97.598 98.882 -4.0212 73 36 3 0 0 0 0.51622 1 19680 19680 23.79 1.0535 1 4736900 + 1965 23257 1026 1028 2294 2294 -0.004043566329528403 AEQMRLAQV 9 Unmodified _AEQMRLAQV_ 0 0 0 ENST00000459988.1_1_9:33998751-34011627:-|nuORF;ENST00000480885.5_1_9:33998751-34017161:-|nuORF;UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant;UBAP2|p.K381Efs*18|1|0.03|ENSG00000137073|chr9:33948506-33948507|-/G|frameshift_variant;ENSG00000137073|ENST00000379238|UBAP2 ENST00000459988.1_1_9:33998751-34011627:-|nuORF ENST00000459988.1_1_9:33998751-34011627:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6791381835938 2 523.276583 1044.53861 0.033898 1.7738E-05 -0.54899 -0.00028727 -0.51509 -0.00026953 523.2762168231384 71.045 0.79906 71.045 70.449 71.248 0 30 22 2 0 0 0 0.051332 1 13746 13746 70.332 32.358 1 3342200 1966 4063 1027 1029 2295 2295 0.018126149400586655 AEQMRLAQV 9 Unmodified _AEQMRLAQV_ 0 0 0 ENST00000459988.1_1_9:33998751-34011627:-|nuORF;ENST00000480885.5_1_9:33998751-34017161:-|nuORF;UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant;UBAP2|p.K381Efs*18|1|0.03|ENSG00000137073|chr9:33948506-33948507|-/G|frameshift_variant;ENSG00000137073|ENST00000379238|UBAP2 ENST00000459988.1_1_9:33998751-34011627:-|nuORF ENST00000459988.1_1_9:33998751-34011627:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.276583 1044.53861 -0.42488 -0.00022233 -0.030471 -1.5945E-05 -0.45535 -0.00023827 523.2763830231946 74.48 0.65603 70.803 70.45 71.106 -3.6764 -0.12085 0.00023889 NaN 70.332 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3019700 1967 4063 1027 1029 0.018126149400586655 AEQNVKLQ 8 Unmodified _AEQNVKLQ_ 0 0 0 REV__GBP5|p.K244Sfs*13|1|0.31|ENSG00000154451|chr1:89266483-89266483|T/-|frameshift_variant REV__GBP5|p.K244Sfs*13|1|0.31|ENSG00000154451|chr1:89266483-89266483|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2559814453125 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 25.578 1 25.578 25.078 26.078 0 0 0 0 0.17145 1 4446 4446 34.402 5.3201 1 + 1968 17181 1028 1030 2296 2296 0.03068596892092046 AEQPHLHN 8 Unmodified _AEQPHLHN_ 0 0 0 REV__ENST00000326793.10_2_3:195022866-195027271:-|nuORF REV__ENST00000326793.10_2_3:195022866-195027271:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 472.7561340332031 2 473.230491 944.446428 0.014935 7.0679E-06 -0.0525 -2.4845E-05 -0.037565 -1.7777E-05 473.2300721198408 33.2 0.9758 30.882 30.207 31.182 -2.3175 46 27 3 0 0 0 1.0231 1 5976 5976 4.3292 0.38484 1 5147000 + 1969 20587 1029 1031 2297 2297 -0.028017270819646 AEQPHLHN 8 Unmodified _AEQPHLHN_ 0 0 0 REV__ENST00000326793.10_2_3:195022866-195027271:-|nuORF REV__ENST00000326793.10_2_3:195022866-195027271:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 473.230491 944.446428 0.19396 9.1788E-05 -0.33672 -0.00015935 -0.14276 -6.7559E-05 473.2299657561706 33.088 0.87971 30.941 30.343 31.222 -2.1468 0.019293 -1.0451E-05 NaN 4.3292 52 24 3 NaN NaN NaN NaN 0 NaN NaN 0 5837900 + 1970 20587 1029 1031 -0.028017270819646 AEQPHLHN 8 Unmodified _AEQPHLHN_ 0 0 0 REV__ENST00000326793.10_2_3:195022866-195027271:-|nuORF REV__ENST00000326793.10_2_3:195022866-195027271:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 473.230491 944.446428 0.42914 0.00020308 -0.60608 -0.00028681 -0.17693 -8.373E-05 473.2298237606678 33.158 0.83079 30.943 30.351 31.182 -2.2158 0.02057 -0.00026539 NaN 4.3292 52 23 3 NaN NaN NaN NaN 0 NaN NaN 0 4904900 + 1971 20587 1029 1031 -0.028017270819646 AEQPKKDL 8 Unmodified _AEQPKKDL_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25079345703125 2 464.758549 927.502546 0.14946 6.9463E-05 -0.012838 -5.9664E-06 0.13662 6.3497E-05 464.75850428043566 32.589 0.45139 32.589 32.329 32.78 0 19 12 2 0 0 0 0.71876 1 5899 5899 11.64 1.4569 1 608860 1972 3604 1030 1032 2298 2298 0.03589481034839537 AEQPKKDL 8 Unmodified _AEQPKKDL_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25848388671875 2 464.758549 927.502546 0.32296 0.0001501 -0.3014 -0.00014008 0.021556 1.0018E-05 464.7584274018346 35.31 0.48845 33.033 32.828 33.316 -2.2766 23 13 2 0 0 0 0.27447 1 6231 6231 37.974 8.8924 1 1319100 1973 3604 1030 1032 2299 2299 0.03589481034839537 AEQPPDLH 8 Unmodified _AEQPPDLH_ 0 0 0 nc|ENSG00000116717|P24522-2|GADD45A;ENSG00000116717|ENST00000370986|GADD45A nc|ENSG00000116717|P24522-2|GADD45A nc|ENSG00000116717|P24522-2|GADD45A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7586669921875 2 453.719424 905.424296 0.30136 0.00013673 -0.11619 -5.272E-05 0.18517 8.4015E-05 453.71930322975805 27.86 0.79588 27.86 27.49 28.286 0 46 22 3 0 0 0 8448 1 4974 4974 10.074 1.9184 1 1814500 1974 2947 1031 1033 2300 2300 -0.03219951550397582 AEQPPDLH 8 Unmodified _AEQPPDLH_ 0 0 0 nc|ENSG00000116717|P24522-2|GADD45A;ENSG00000116717|ENST00000370986|GADD45A nc|ENSG00000116717|P24522-2|GADD45A nc|ENSG00000116717|P24522-2|GADD45A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76806640625 2 453.719424 905.424296 0.29669 0.00013462 -0.21824 -9.9021E-05 0.078451 3.5595E-05 453.71923440863486 29.744 1.0148 27.851 27.332 28.346 -1.8928 41 28 2 0 0 0 0.49114 1 5117 5117 28.487 8.0332 1 933810 1975 2947 1031 1033 2301 2301 -0.03219951550397582 AEQPPDLH 8 Unmodified _AEQPPDLH_ 0 0 0 nc|ENSG00000116717|P24522-2|GADD45A;ENSG00000116717|ENST00000370986|GADD45A nc|ENSG00000116717|P24522-2|GADD45A nc|ENSG00000116717|P24522-2|GADD45A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.719424 905.424296 0.45744 0.00020755 -0.22751 -0.00010322 0.22994 0.00010433 453.71921717872095 29.716 0.83934 27.599 27.35 28.189 -2.1167 -0.19442 -1.628E-05 NaN 28.487 38 23 2 NaN NaN NaN NaN 0 NaN NaN 0 756780 1976 2947 1031 1033 -0.03219951550397582 AEQPPHLTP 9 Unmodified _AEQPPHLTP_ 0 0 0 ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 990.3825073242188 1 989.505071 988.497795 0.3016 0.00029844 -0.48941 -0.00048427 -0.18781 -0.00018584 989.5045535457398 56.296 1.4328 53.107 52.601 54.034 -3.1895 99 40 3 0 0 0 0.12612 1 10559 10559 47.594 16.326 1 37294000 1977 4669 1032 1034 2302 2302 0.003085968920800042 AEQPPHLTP 9 Unmodified _AEQPPHLTP_ 0 0 0 ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 991.5106811523438 1 989.505071 988.497795 0.14017 0.0001387 -0.34351 -0.00033991 -0.20334 -0.00020121 989.5046817604366 56.335 1.3798 53.159 52.622 54.002 -3.1761 100 38 3 0 0 0 0.24263 1 10453 10453 34.932 10.911 1 30788000 1978 4669 1032 1034 2303 2303 0.003085968920800042 AEQPPHLTP 9 Unmodified _AEQPPHLTP_ 0 0 0 ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 989.505071 988.497795 0.55134 0.00054556 -0.70842 -0.00070098 -0.15708 -0.00015543 989.5043033795687 53.071 1.3163 53.071 52.608 53.924 0 -0.028367 -0.00033602 NaN 47.594 95 36 3 NaN NaN NaN NaN 0 NaN NaN 0 31926000 1979 4669 1032 1034 0.003085968920800042 AEQPPHLTP 9 Unmodified _AEQPPHLTP_ 0 0 0 ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 989.505071 988.497795 -0.21964 -0.00021733 0.069569 6.8839E-05 -0.15007 -0.00014849 989.5050778796706 55.943 1.447 53.06 52.592 54.039 -2.8837 -0.039362 0.00043381 NaN 47.594 103 41 3 NaN NaN NaN NaN 0 NaN NaN 0 38316000 1980 4669 1032 1034 0.003085968920800042 AEQPTALTV 9 Unmodified _AEQPTALTV_ 0 0 0 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25018310546875 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 82.474 1 78.775 78.275 79.275 -3.6985 0 0 0 0.17061 1 15729 15729 27.629 9.4825 1 1981 5269 1033 1035 2304 2304 0.019457747979458873 AEQQPLPH 8 Unmodified _AEQQPLPH_ 0 0 0 REV__ENST00000549000.1_1_12:49952961-49953168:-|nuORF REV__ENST00000549000.1_1_12:49952961-49953168:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353515625 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 16.357 1 15.135 14.635 15.635 -1.2219 0 0 0 0.21486 1 2348 2348 4.756 0 1 + 1982 22915 1034 1036 2305 2305 -0.006559587964375169 AEQQQQRQRM 10 Unmodified _AEQQQQRQRM_ 0 0 0 REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 434.8833923339844 3 434.882565 1301.62587 NaN NaN NaN NaN NaN NaN NaN 56.418 1 53.229 52.729 53.729 -3.1895 0 0 0 0.22588 1 10457 10457 3.5871 1.9948 1 + 1983 19514 1035 1037 2306 2306 -0.012882108563417205 AEQQREVKEQQ 11 Unmodified _AEQQREVKEQQ_ 0 0 0 REV__ENSG00000197651|ENST00000358859|CCER1 REV__ENSG00000197651|ENST00000358859|CCER1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2339782714844 3 458.232028 1371.67426 NaN NaN NaN NaN NaN NaN NaN 76.821 1 76.821 76.321 77.321 0 0 0 0 0.22632 1 14928 14928 2.732 1.3246 1 + 1984 19357 1036 1038 2307 2307 0.003285612645868241 AEQQTVAAV 9 Unmodified _AEQQTVAAV_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2236022949219 2 458.740357 915.46616 -0.3063 -0.00014051 -1.0989 -0.00050411 -1.4052 -0.00064462 458.74060461101413 40.933 0.94676 38.298 37.798 38.745 -2.6348 70 26 3 0 0 0 0.050901 1 7607 7607 85.642 4.0284 1 8515300 1985 1673 1037 1039 2308 2308 0.005046041381433497 AEQQTVAAV 9 Unmodified _AEQQTVAAV_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23516845703125 2 458.740357 915.46616 0.07276 3.3378E-05 -1.3607 -0.00062422 -1.288 -0.00059084 458.7404300428372 40.892 0.98822 38.402 37.9 38.889 -2.4896 71 27 3 0 0 0 0.35202 1 7357 7357 45.7 11.298 1 5520900 1986 1673 1037 1039 2309 2309 0.005046041381433497 AEQRFLAGA 9 Unmodified _AEQRFLAGA_ 0 0 0 ENST00000593629.5_1_19:49951115-49951363:-|nuORF;nc|ENSG00000104872|Q9NWS0-2|PIH1D1 ENST00000593629.5_1_19:49951115-49951363:-|nuORF ENST00000593629.5_1_19:49951115-49951363:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25225830078125 2 481.756341 961.498129 -0.29278 -0.00014105 0.40044 0.00019291 0.10766 5.1867E-05 481.7564542532291 59.206 0.89095 59.206 58.757 59.648 0 68 24 4 0 0 0 0.23009 1 11323 11323 55.503 13.663 1 23524000 1987 11646 1038 1040 2310 2310 0.015840166119346577 AEQRFLAGA 9 Unmodified _AEQRFLAGA_ 0 0 0 ENST00000593629.5_1_19:49951115-49951363:-|nuORF;nc|ENSG00000104872|Q9NWS0-2|PIH1D1 ENST00000593629.5_1_19:49951115-49951363:-|nuORF ENST00000593629.5_1_19:49951115-49951363:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7662658691406 2 481.756341 961.498129 0.099793 4.8076E-05 -0.0013946 -6.7184E-07 0.098399 4.7404E-05 481.75630627599236 62.035 0.88446 59.074 58.651 59.536 -2.9614 76 24 4 0 0 0 0.13904 1 12043 12043 45.74 9.6129 1 28249000 1988 11646 1038 1040 2311 2311 0.015840166119346577 AEQRFLAGA 9 Unmodified _AEQRFLAGA_ 0 0 0 ENST00000593629.5_1_19:49951115-49951363:-|nuORF;nc|ENSG00000104872|Q9NWS0-2|PIH1D1 ENST00000593629.5_1_19:49951115-49951363:-|nuORF ENST00000593629.5_1_19:49951115-49951363:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7877502441406 2 481.756341 961.498129 0.17272 8.321E-05 -0.098744 -4.757E-05 0.073979 3.564E-05 481.7562156885641 62.384 1.0552 59.015 58.532 59.587 -3.3694 82 29 4 0 0 0 0.019191 2 11637 11637;11718 93.166 26.709 1 22637000 1989 11646 1038 1040 2312;2313 2312 0.015840166119346577 AEQRFLAGA 9 Unmodified _AEQRFLAGA_ 0 0 0 ENST00000593629.5_1_19:49951115-49951363:-|nuORF;nc|ENSG00000104872|Q9NWS0-2|PIH1D1 ENST00000593629.5_1_19:49951115-49951363:-|nuORF ENST00000593629.5_1_19:49951115-49951363:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 481.756341 961.498129 0.13702 6.601E-05 -0.044844 -2.1604E-05 0.092174 4.4406E-05 481.75624997986426 62.294 1.0728 59.054 58.554 59.627 -3.2395 -0.032897 -9.2057E-05 NaN 93.166 90 30 4 NaN NaN NaN NaN 0 NaN NaN 0 25796000 1990 11646 1038 1040 0.015840166119346577 AEQRQKGY 8 Unmodified _AEQRQKGY_ 0 0 0 REV__ENSG00000158008|ENST00000374280|EXTL1 REV__ENSG00000158008|ENST00000374280|EXTL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25262451171875 2 490.251423 978.488293 NaN NaN NaN NaN NaN NaN NaN 27.315 1 25.56 25.06 26.06 -1.7552 0 0 0 0.21486 1 4565 4565 8.5933 1.8701 1 + 1991 17317 1039 1041 2314 2314 -0.001811713934330328 AEQRSLSAQP 10 Unmodified _AEQRSLSAQP_ 0 0 0 ENST00000542575.6_2_19:47291354-47291816:-|nuORF ENST00000542575.6_2_19:47291354-47291816:-|nuORF ENST00000542575.6_2_19:47291354-47291816:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7804565429688 2 543.780544 1085.54654 0.36242 0.00019708 -0.10979 -5.97E-05 0.25263 0.00013738 543.7803261298167 23.669 0.6306 23.669 23.303 23.933 0 38 17 3 0 0 0 0.092113 3 4035 4035;4078;4080 63.227 34.146 1 2011200 1992 11092 1040 1042 2315;2316;2317 2315 0.00718465461204687 AEQRSLSAQP 10 Unmodified _AEQRSLSAQP_ 0 0 0 ENST00000542575.6_2_19:47291354-47291816:-|nuORF ENST00000542575.6_2_19:47291354-47291816:-|nuORF ENST00000542575.6_2_19:47291354-47291816:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78076171875 2 543.780544 1085.54654 1.3584 0.00073868 -1.0622 -0.0005776 0.29622 0.00016108 543.7797322310778 25.317 0.62856 23.669 23.337 23.966 -1.6482 28 17 2 0 0 0 0.47611 3 4440 4395;4440;4444 14.405 10.355 1 911050 1993 11092 1040 1042 2318;2319;2320 2319 0.00718465461204687 AEQRSLSAQP 10 Unmodified _AEQRSLSAQP_ 0 0 0 ENST00000542575.6_2_19:47291354-47291816:-|nuORF ENST00000542575.6_2_19:47291354-47291816:-|nuORF ENST00000542575.6_2_19:47291354-47291816:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.780517578125 2 543.780544 1085.54654 -0.040808 -2.219E-05 0.24232 0.00013177 0.20151 0.00010958 543.7804021492989 25.427 0.55302 23.573 23.256 23.809 -1.8534 25 15 2 0 0 0 0.4144 2 4198 4148;4198 29.841 8.3036 1 785360 1994 11092 1040 1042 2321;2322 2322 0.00718465461204687 AEQRSLSAQP 10 Unmodified _AEQRSLSAQP_ 0 0 0 ENST00000542575.6_2_19:47291354-47291816:-|nuORF ENST00000542575.6_2_19:47291354-47291816:-|nuORF ENST00000542575.6_2_19:47291354-47291816:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.780544 1085.54654 0.083072 4.5173E-05 0.36822 0.00020023 0.45129 0.0002454 543.7803637971817 25.159 0.45334 23.625 23.435 23.889 -1.5342 -0.0089547 0.0005374 NaN 63.227 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1046300 1995 11092 1040 1042 0.00718465461204687 AEQRSPPPP 9 Unmodified _AEQRSPPPP_ 0 0 0 ENSG00000253368|ENST00000522111|TRNP1 ENSG00000253368|ENST00000522111|TRNP1 ENSG00000253368|ENST00000522111|TRNP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2554016113281 2 489.753798 977.493044 0.11318 5.5429E-05 0.13065 6.3988E-05 0.24383 0.00011942 489.75389578741357 16.804 2.2378 16.804 16.164 18.402 0 174 63 4 0 0 0 0.022938 7 2727 2583;2629;2679;2727;2779;2828;2921 89.401 33.224 1 42740000 1996 7913 1041 1043 2323;2324;2325;2326;2327;2328;2329 2326 0.0033971274932582674 AEQRSPPPP 9 Unmodified _AEQRSPPPP_ 0 0 0 ENSG00000253368|ENST00000522111|TRNP1 ENSG00000253368|ENST00000522111|TRNP1 ENSG00000253368|ENST00000522111|TRNP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25531005859375 2 489.753798 977.493044 0.011669 5.7151E-06 0.22383 0.00010962 0.2355 0.00011534 489.7539412010011 18.017 2.6065 16.706 15.995 18.601 -1.3109 204 74 4 0 0 0 0.028327 9 2934 2793;2843;2885;2934;2977;3025;3072;3123;3171 83.429 21.827 1 37416000 1997 7913 1041 1043 2330;2331;2332;2333;2334;2335;2336;2337;2338 2333 0.0033971274932582674 AEQRSPPPP 9 Unmodified _AEQRSPPPP_ 0 0 0 ENSG00000253368|ENST00000522111|TRNP1 ENSG00000253368|ENST00000522111|TRNP1 ENSG00000253368|ENST00000522111|TRNP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2551574707031 2 489.753798 977.493044 -0.29483 -0.00014439 0.60518 0.00029639 0.31036 0.000152 489.7541028901251 18.012 2.1579 16.74 16.109 18.267 -1.2722 154 61 4 0 0 0 0.063365 8 2596 2596;2639;2687;2731;2777;2824;2868;2909 66.457 22.598 1 17771000 1998 7913 1041 1043 2339;2340;2341;2342;2343;2344;2345;2346 2339 0.0033971274932582674 AEQSGLVKAY 10 Unmodified _AEQSGLVKAY_ 0 0 0 REV__nc|ENSG00000189221|P21397-2|MAOA REV__nc|ENSG00000189221|P21397-2|MAOA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2827758789062 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 23.159 1 23.159 22.659 23.659 0 0 0 0 0.22588 1 3941 3941 10.074 1.4806 1 + 1999 19202 1042 1044 2347 2347 0.020531352350417365 AEQSVLYLR 9 Unmodified _AEQSVLYLR_ 0 0 0 REV__ENST00000415195.1_1_6:30484273-30486575:+|nuORF REV__ENST00000415195.1_1_6:30484273-30486575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 93.573 1 93.573 93.073 94.073 0 0 0 0 0.23508 1 18312 18312 11.495 0 1 + 2000 21452 1043 1045 2348 2348 0.046171279889904326 AEQTDMPEP 9 Unmodified _AEQTDMPEP_ 0 0 0 REV__ENSG00000160888|ENST00000292433|IER2 REV__ENSG00000160888|ENST00000292433|IER2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.4879455566406 3 339.811302 1016.41208 -0.51084 -0.00017359 0.92945 0.00031584 0.41861 0.00014225 339.81158163140293 99.06 0.8886 95.104 94.631 95.52 -3.9564 39 25 3 0 0 0 0.5428 1 18995 18995 4.897 3.1547 1 2884600 + 2001 17440 1044 1046 2349 2349 -0.09547356075734115 AEQTDMPEP 9 Unmodified _AEQTDMPEP_ 0 0 0 REV__ENSG00000160888|ENST00000292433|IER2 REV__ENSG00000160888|ENST00000292433|IER2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 339.811302 1016.41208 -0.58167 -0.00019766 0.99618 0.00033851 0.41451 0.00014086 339.81163280556825 94.873 0.83262 94.873 94.485 95.318 0 -0.17067 0.00027986 NaN 4.897 42 23 2 NaN NaN NaN NaN 0 NaN NaN 0 2121900 + 2002 17440 1044 1046 -0.09547356075734115 AEQTDMPEP 9 Unmodified _AEQTDMPEP_ 0 0 0 REV__ENSG00000160888|ENST00000292433|IER2 REV__ENSG00000160888|ENST00000292433|IER2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 339.811302 1016.41208 -0.24594 -8.3572E-05 0.69904 0.00023754 0.4531 0.00015397 339.81151159968226 99.27 0.69248 95.137 94.679 95.372 -4.1326 0.094245 -2.306E-05 NaN 4.897 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1610700 + 2003 17440 1044 1046 -0.09547356075734115 AEQTDMPEP 9 Unmodified _AEQTDMPEP_ 0 0 0 REV__ENSG00000160888|ENST00000292433|IER2 REV__ENSG00000160888|ENST00000292433|IER2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 339.811302 1016.41208 -0.51084 -0.00017359 0.92945 0.00031584 0.41861 0.00014225 339.81158163140293 99.06 0.8886 95.104 94.631 95.52 -3.9564 0.060674 0.00021182 NaN 4.897 39 25 3 NaN NaN NaN NaN 0 NaN NaN 0 2884600 + 2004 17440 1044 1046 -0.09547356075734115 AEQTPSRPP 9 Unmodified _AEQTPSRPP_ 0 0 0 ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L ENSG00000186174|ENST00000683865|BCL9L ENSG00000186174|ENST00000683865|BCL9L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 492.76361083984375 2 491.751256 981.487959 -0.21603 -0.00010623 0.89525 0.00044024 0.67922 0.00033401 491.7515184777594 20.203 1.707 18.878 18.145 19.852 -1.3251 146 48 6 0 0 0 0.25976 1 3068 3068 19.626 8.727 1 12453000 2005 7040 1045 1047 2350 2350 -0.0035259111327832215 AEQTPSRPP 9 Unmodified _AEQTPSRPP_ 0 0 0 ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L ENSG00000186174|ENST00000683865|BCL9L ENSG00000186174|ENST00000683865|BCL9L MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 491.751256 981.487959 0.14226 6.9954E-05 0.17813 8.7596E-05 0.32039 0.00015755 491.75133003841324 18.741 1.4305 18.741 18.09 19.52 0 -0.09243 -0.00020695 NaN 19.626 98 40 3 NaN NaN NaN NaN 0 NaN NaN 0 16893000 2006 7040 1045 1047 -0.0035259111327832215 AEQTPSRPP 9 Unmodified _AEQTPSRPP_ 0 0 0 ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L ENSG00000186174|ENST00000683865|BCL9L ENSG00000186174|ENST00000683865|BCL9L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 491.751256 981.487959 0.35933 0.0001767 0.27935 0.00013737 0.63868 0.00031407 491.7512440630129 20.278 1.5357 18.881 18.102 19.638 -1.3966 0.047852 -0.0001074 NaN 19.626 151 43 6 NaN NaN NaN NaN 0 NaN NaN 0 15529000 2007 7040 1045 1047 -0.0035259111327832215 AEQWRFSSA 9 Unmodified _AEQWRFSSA_ 0 0 0 nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2832641601562 2 541.256705 1080.49886 0.65181 0.00035279 -0.73211 -0.00039626 -0.080303 -4.3464E-05 541.2563058960682 77.833 0.65955 77.833 77.532 78.191 0 40 18 3 0 0 0 0.11773 1 15197 15197 49.742 20.66 1 5206000 2008 5093 1046 1048 2351 2351 -0.03817188739003541 AEQWRFSSA 9 Unmodified _AEQWRFSSA_ 0 0 0 nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2760009765625 2 541.256705 1080.49886 0.21736 0.00011765 -0.5222 -0.00028265 -0.30484 -0.000165 541.2563629767076 81.743 0.82521 78.186 77.757 78.582 -3.557 55 23 3 0 0 0 0.021293 2 15981 15981;16033 91.085 34.908 1 4843000 2009 5093 1046 1048 2352;2353 2352 -0.03817188739003541 AEQWRFSSA 9 Unmodified _AEQWRFSSA_ 0 0 0 nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.284423828125 2 541.256705 1080.49886 0.10723 5.8039E-05 -0.17061 -9.2345E-05 -0.063381 -3.4306E-05 541.2565953905461 81.866 0.61719 78.027 77.749 78.366 -3.8392 45 17 3 0 0 0 0.11436 1 15525 15525 66.683 33.897 1 3832900 2010 5093 1046 1048 2354 2354 -0.03817188739003541 AEQWRFSSA 9 Unmodified _AEQWRFSSA_ 0 0 0 nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2839965820312 2 541.256705 1080.49886 -0.083808 -4.5362E-05 0.02728 1.4765E-05 -0.056528 -3.0596E-05 541.2566901938918 81.719 0.73037 78.031 77.696 78.426 -3.6879 36 20 2 0 0 0 0.048508 1 15577 15577 74.772 34.822 1 5308000 2011 5093 1046 1048 2355 2355 -0.03817188739003541 AEQYPGGMARA 11 Unmodified _AEQYPGGMARA_ 0 0 0 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3375244140625 2 575.769123 1149.52369 -0.10558 -6.0791E-05 0.0016003 9.2138E-07 -0.10398 -5.9869E-05 575.7692121105092 43.231 0.71541 40.512 40.161 40.877 -2.7191 27 19 2 0 0 0 0.43555 1 8119 8119 29.437 5.4166 1 3329600 2012 1265 1047 1049 2356 2356 -0.0450887692793458 AEQYPGGMARA 11 Unmodified _AEQYPGGMARA_ 0 0 0 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3302001953125 2 575.769123 1149.52369 0.045145 2.5993E-05 -0.32223 -0.00018553 -0.27709 -0.00015954 575.7689626491467 43.152 0.88556 40.464 39.988 40.873 -2.6872 34 24 2 0 0 0 0.4577 1 7824 7824 40.239 15.565 1 3144400 2013 1265 1047 1049 2357 2357 -0.0450887692793458 AEQYPGGMARA 11 Unmodified _AEQYPGGMARA_ 0 0 0 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3169555664062 2 575.769123 1149.52369 -0.013096 -7.5401E-06 -0.45805 -0.00026373 -0.47115 -0.00027127 575.7689048933031 43.071 0.79942 40.465 40.142 40.941 -2.606 25 22 2 0 0 0 0.69573 1 7746 7746 27.223 6.7696 1 1586600 2014 1265 1047 1049 2358 2358 -0.0450887692793458 AERADVDDVRY 11 Unmodified _AERADVDDVRY_ 0 0 0 tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1 tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1 tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156982421875 3 436.877474 1307.61059 NaN NaN NaN NaN NaN NaN NaN 95.704 1 91.513 91.013 92.013 -4.1911 0 0 0 0.23562 1 18267 18267 3.8459 1.4111 1 2015 26207 1048 1050 2359 2359 -0.030907991725143802 AERAEPLPP 9 Unmodified _AERAEPLPP_ 0 0 0 REV__ENST00000369077.3_1_10:121632184-121632316:-|nuORF REV__ENST00000369077.3_1_10:121632184-121632316:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26324462890625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 15.627 1 14.412 13.912 14.912 -1.2159 0 0 0 0.23508 1 2418 2418 7.2892 0 1 + 2016 20953 1049 1051 2360 2360 0.023328834091330464 AERAEPLPP 9 Unmodified _AERAEPLPP_ 0 0 0 REV__ENST00000369077.3_1_10:121632184-121632316:-|nuORF REV__ENST00000369077.3_1_10:121632184-121632316:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26226806640625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 15.766 1 14.544 14.044 15.044 -1.2219 0 0 0 0.23508 1 2231 2231 7.2892 0 1 + 2017 20953 1049 1051 2361 2361 0.023328834091330464 AERCVLKID 9 Unmodified _AERCVLKID_ 0 0 0 REV__nc|ENSG00000167216|Q8IYT4-2|KATNAL2 REV__nc|ENSG00000167216|Q8IYT4-2|KATNAL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.690673828125 2 523.786784 1045.55902 NaN NaN NaN NaN NaN NaN NaN 20.022 1 18.386 17.886 18.886 -1.6351 0 0 0 0.19636 1 3057 3057 2.4985 2.3756 1 + 2018 17912 1050 1052 2362 2362 0.03805785599865885 AERCVLKID 9 Unmodified _AERCVLKID_ 0 0 0 REV__nc|ENSG00000167216|Q8IYT4-2|KATNAL2 REV__nc|ENSG00000167216|Q8IYT4-2|KATNAL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.690673828125 2 523.786784 1045.55902 NaN NaN NaN NaN NaN NaN NaN 20.036 1 18.401 17.901 18.901 -1.6351 0 0 0 0.23508 1 3060 3060 8.7454 0.15213 1 + 2019 17912 1050 1052 2363 2363 0.03805785599865885 AERCVNCY 8 Unmodified _AERCVNCY_ 0 0 0 REV__DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant REV__DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7218017578125 2 479.199487 956.384421 0.11854 5.6802E-05 -1.5518 -0.0007436 -1.4332 -0.0006868 479.19855179535176 61.777 0.77865 58.407 58.037 58.816 -3.3694 30 21 2 0 0 0 0.73936 1 11568 11568 8.5933 1.304 1 1057600 + 2020 13672 1051 1053 2364 2364 -0.09551537816969358 AERDALNIETA 11 Unmodified _AERDALNIETA_ 0 0 0 ENST00000557937.5_1_15:60655071-60678274:-|nuORF;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion ENST00000557937.5_1_15:60655071-60678274:-|nuORF ENST00000557937.5_1_15:60655071-60678274:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2824096679688 2 601.804217 1201.59388 0.061388 3.6944E-05 0.33331 0.00020059 0.3947 0.00023753 601.8043653966733 66.678 0.77665 66.678 66.31 67.087 0 64 21 4 0 0 0 1.9214E-09 1 12864 12864 154.75 88.296 1 24753000 2021 6806 1052 1054 2365 2365 0.001146999415141181 AERDALNIETA 11 Unmodified _AERDALNIETA_ 0 0 0 ENST00000557937.5_1_15:60655071-60678274:-|nuORF;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion ENST00000557937.5_1_15:60655071-60678274:-|nuORF ENST00000557937.5_1_15:60655071-60678274:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2901000976562 2 601.804217 1201.59388 0.91479 0.00055053 -0.53172 -0.00031999 0.38307 0.00023053 601.803891015633 69.813 0.88429 66.633 66.223 67.107 -3.1796 75 24 4 0 0 0 0.058198 1 13614 13614 125.18 61.221 1 25880000 2022 6806 1052 1054 2366 2366 0.001146999415141181 AERDALNIETA 11 Unmodified _AERDALNIETA_ 0 0 0 ENST00000557937.5_1_15:60655071-60678274:-|nuORF;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion ENST00000557937.5_1_15:60655071-60678274:-|nuORF ENST00000557937.5_1_15:60655071-60678274:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2922973632812 2 601.804217 1201.59388 0.73154 0.00044024 -0.32878 -0.00019786 0.40276 0.00024238 601.8040033038213 70.254 0.80933 66.674 66.242 67.052 -3.5798 71 22 4 0 0 0 0.084202 1 13211 13211 121.5 55.047 1 22571000 2023 6806 1052 1054 2367 2367 0.001146999415141181 AERDALNIETA 11 Unmodified _AERDALNIETA_ 0 0 0 ENST00000557937.5_1_15:60655071-60678274:-|nuORF;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion ENST00000557937.5_1_15:60655071-60678274:-|nuORF ENST00000557937.5_1_15:60655071-60678274:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.281982421875 2 601.804217 1201.59388 0.42219 0.00025407 0.010597 6.3773E-06 0.43279 0.00026045 601.8042153722345 70.126 0.84242 66.659 66.254 67.096 -3.467 73 23 4 0 0 0 4.1936E-05 1 13295 13295 143.21 76.757 1 21614000 2024 6806 1052 1054 2368 2368 0.001146999415141181 AERDCRAS 8 Unmodified _AERDCRAS_ 0 0 0 RBP4|p.V24A|1|0.36|ENSG00000138207|chr10:93600958-93600958|A/G|missense_variant RBP4|p.V24A|1|0.36|ENSG00000138207|chr10:93600958-93600958|A/G|missense_variant RBP4|p.V24A|1|0.36|ENSG00000138207|chr10:93600958-93600958|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.765869140625 2 454.206158 906.397763 NaN NaN NaN NaN NaN NaN NaN 81.52 1 77.963 77.463 78.463 -3.557 0 0 0 0.21486 1 15922 15922 7.9102 2.1497 1 2025 12874 1053 1055 2369 2369 -0.05917963713363861 AERDCRAS 8 Unmodified _AERDCRAS_ 0 0 0 RBP4|p.V24A|1|0.36|ENSG00000138207|chr10:93600958-93600958|A/G|missense_variant RBP4|p.V24A|1|0.36|ENSG00000138207|chr10:93600958-93600958|A/G|missense_variant RBP4|p.V24A|1|0.36|ENSG00000138207|chr10:93600958-93600958|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.761962890625 2 454.206158 906.397763 NaN NaN NaN NaN NaN NaN NaN 58.529 1 55.277 54.777 55.777 -3.2517 0 0 0 0.21486 1 10879 10879 12.532 5.2423 1 2026 12874 1053 1055 2370 2370 -0.05917963713363861 AERDCRAS 8 Unmodified _AERDCRAS_ 0 0 0 RBP4|p.V24A|1|0.36|ENSG00000138207|chr10:93600958-93600958|A/G|missense_variant RBP4|p.V24A|1|0.36|ENSG00000138207|chr10:93600958-93600958|A/G|missense_variant RBP4|p.V24A|1|0.36|ENSG00000138207|chr10:93600958-93600958|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75555419921875 2 454.206158 906.397763 NaN NaN NaN NaN NaN NaN NaN 90.03 1 86.252 85.752 86.752 -3.7779 0 0 0 0.23182 1 17228 17228 0.62683 0.50396 1 2027 12874 1053 1055 2371 2371 -0.05917963713363861 AERDLPGLNR 10 Unmodified _AERDLPGLNR_ 0 0 0 REV__CDHR2|p.G788Vfs*4|1|0.31|ENSG00000074276|chr5:176584639-176584639|G/-|frameshift_variant REV__CDHR2|p.G788Vfs*4|1|0.31|ENSG00000074276|chr5:176584639-176584639|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.209716796875 3 380.875516 1139.60472 -0.51708 -0.00019694 0.40603 0.00015465 -0.11105 -4.2296E-05 380.87564461416366 16.327 0.30812 15.105 14.955 15.263 -1.2219 24 8 5 0 0 0 0.44731 1 2333 2333 18.721 3.8833 1 5327500 + 2028 13348 1054 1056 2372 2372 0.04050147106477198 AERDLPGTPS 10 Unmodified _AERDLPGTPS_ 0 0 0 REV__nc|ENSG00000163157|Q9NZQ9-2|TMOD4 REV__nc|ENSG00000163157|Q9NZQ9-2|TMOD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2630004882812 2 521.76182 1041.50909 0.08889 4.6379E-05 -0.64075 -0.00033432 -0.55186 -0.00028794 521.7616143431989 31.354 0.17492 29.123 29.059 29.234 -2.2305 6 4 2 0 0 0 0.88798 1 5704 5704 9.544 2.8208 1 581770 + 2029 17553 1055 1057 2373 2373 -0.01000625804408628 AERDPSPW 8 Unmodified _AERDPSPW_ 0 0 0 ENST00000394920.6_1_8:146017501-146017656:-|nuORF ENST00000394920.6_1_8:146017501-146017656:-|nuORF ENST00000394920.6_1_8:146017501-146017656:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7212829589844 2 479.224874 956.435195 0.013426 6.4339E-06 0.043349 2.0774E-05 0.056774 2.7208E-05 479.22493509619954 26.487 0.27313 24.565 24.402 24.675 -1.9222 16 7 3 0 0 0 0.97966 1 4364 4364 11.64 3.7301 1 675460 2030 9420 1056 1058 2374 2374 -0.04476549176104072 AERDPSPW 8 Unmodified _AERDPSPW_ 0 0 0 ENST00000394920.6_1_8:146017501-146017656:-|nuORF ENST00000394920.6_1_8:146017501-146017656:-|nuORF ENST00000394920.6_1_8:146017501-146017656:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.224874 956.435195 -0.01199 -5.7461E-06 0.068054 3.2613E-05 0.056064 2.6867E-05 479.22488850554737 24.639 0.27212 24.639 24.475 24.748 0 0.032751 5.2074E-05 NaN 11.64 14 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1450100 2031 9420 1056 1058 -0.04476549176104072 AERDPSPW 8 Unmodified _AERDPSPW_ 0 0 0 ENST00000394920.6_1_8:146017501-146017656:-|nuORF ENST00000394920.6_1_8:146017501-146017656:-|nuORF ENST00000394920.6_1_8:146017501-146017656:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.224874 956.435195 0.13662 6.5474E-05 -0.067667 -3.2428E-05 0.068958 3.3046E-05 479.22479323169836 26.249 0.34595 24.614 24.408 24.754 -1.6347 0.0084728 -7.8008E-05 NaN 11.64 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1283700 2032 9420 1056 1058 -0.04476549176104072 AERDRYAAQ 9 Unmodified _AERDRYAAQ_ 0 0 0 ENST00000261558.7_1_14:57735867-57735948:+|nuORF ENST00000261558.7_1_14:57735867-57735948:+|nuORF ENST00000261558.7_1_14:57735867-57735948:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20318603515625 3 360.512467 1078.51557 -0.37794 -0.00013625 0.24636 8.8817E-05 -0.13158 -4.7436E-05 360.51254110493136 18.377 0.24035 17.105 16.964 17.204 -1.2722 11 6 2 0 0 0 0.81359 1 2741 2741 11.495 5.2889 1 549540 2033 8299 1057 1059 2375 2375 -0.020546878530694812 AERDRYAAQ 9 Unmodified _AERDRYAAQ_ 0 0 0 ENST00000261558.7_1_14:57735867-57735948:+|nuORF ENST00000261558.7_1_14:57735867-57735948:+|nuORF ENST00000261558.7_1_14:57735867-57735948:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 360.512467 1078.51557 -0.31158 -0.00011233 0.25331 9.1323E-05 -0.058268 -2.1006E-05 360.51251786824434 18.45 0.27927 17.139 17.002 17.282 -1.3109 -0.0050872 5.5381E-05 NaN 11.495 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 870230 2034 8299 1057 1059 -0.020546878530694812 AERDVCVY 8 Unmodified _AERDVCVY_ 0 0 0 REV__ENSG00000135355|ENST00000369352|GJA10 REV__ENSG00000135355|ENST00000369352|GJA10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7298583984375 2 477.72111 953.427666 -0.040815 -1.9498E-05 -0.45333 -0.00021657 -0.49415 -0.00023606 477.7207500941718 27.798 1.0705 27.798 27.528 28.598 0 61 30 3 0 0 0 0.73936 2 4864 4864;4981 8.5933 2.3875 1 4768200 + 2035 16261 1058 1060 2376;2377 2376 -0.05091024768034913 AEREGVAPS 9 Unmodified _AEREGVAPS_ 0 0 0 ENST00000597643.5_1_19:17441010-17441209:-|nuORF ENST00000597643.5_1_19:17441010-17441209:-|nuORF ENST00000597643.5_1_19:17441010-17441209:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2303161621094 2 458.230156 914.445759 0.47873 0.00021937 -0.32433 -0.00014862 0.1544 7.0749E-05 458.22999017772673 29.743 0.49048 27.626 27.386 27.877 -2.1167 32 13 3 0 0 0 0.42844 1 5397 5397 24.021 0.87215 1 7166100 2036 11675 1059 1061 2378 2378 -0.0148856652166387 AEREKEFVA 9 Unmodified _AEREKEFVA_ 0 0 0 nc|ENSG00000079950|O15400-2|STX7;ENSG00000079950|ENST00000367941|STX7 nc|ENSG00000079950|O15400-2|STX7 nc|ENSG00000079950|O15400-2|STX7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.200439453125 3 360.189101 1077.54547 0.32454 0.0001169 -0.30495 -0.00010984 0.019594 7.0575E-06 360.1889586742633 29.653 0.56242 27.536 27.314 27.877 -2.1167 37 15 3 0 0 0 0.51461 1 5331 5331 18.721 7.2033 1 4189100 2037 1603 1060 1062 2379 2379 0.009802510922781948 AEREKEFVA 9 Unmodified _AEREKEFVA_ 0 0 0 nc|ENSG00000079950|O15400-2|STX7;ENSG00000079950|ENST00000367941|STX7 nc|ENSG00000079950|O15400-2|STX7 nc|ENSG00000079950|O15400-2|STX7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2124328613281 3 360.189101 1077.54547 0.34958 0.00012591 -0.27074 -9.7518E-05 0.078839 2.8397E-05 360.18894227679226 29.542 0.52572 27.649 27.402 27.928 -1.8928 43 14 4 0 0 0 0.5835 2 5031 5031;5059 14.218 4.6742 1 4500300 2038 1603 1060 1062 2380;2381 2380 0.009802510922781948 AEREKEFVA 9 Unmodified _AEREKEFVA_ 0 0 0 nc|ENSG00000079950|O15400-2|STX7;ENSG00000079950|ENST00000367941|STX7 nc|ENSG00000079950|O15400-2|STX7 nc|ENSG00000079950|O15400-2|STX7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2020263671875 3 360.189101 1077.54547 -0.18237 -6.5687E-05 0.18075 6.5103E-05 -0.0016196 -5.8337E-07 360.18912592524896 29.638 0.73099 27.564 27.309 28.04 -2.0743 44 20 4 0 0 0 0.5835 1 5048 5048 14.218 1.9775 1 3245800 2039 1603 1060 1062 2382 2382 0.009802510922781948 AERENSQK 8 Unmodified _AERENSQK_ 0 0 0 REV__EPHB4|p.G569E|1|0.34|ENSG00000196411|chr7:100813702-100813702|C/T|missense_variant REV__EPHB4|p.G569E|1|0.34|ENSG00000196411|chr7:100813702-100813702|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2364807128906 2 481.238513 960.462472 -0.017256 -8.3044E-06 -2.8368 -0.0013652 -2.8541 -0.0013735 481.23749774443615 72.952 0.70074 72.952 72.505 73.206 0 39 19 3 0 0 0 8448 1 14138 14138 1.7423 1.334 1 3773500 + 2040 23496 1061 1063 2383 2383 -0.019340656357144326 AERERWGG 8 Unmodified _AERERWGG_ 0 0 0 REV__ENST00000378372.7_1_10:14880213-14880345:+|nuORF REV__ENST00000378372.7_1_10:14880213-14880345:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2350769042969 2 480.73594 959.457327 -0.36289 -0.00017446 -0.74038 -0.00035593 -1.1033 -0.00053038 480.73542976015074 18.334 0.23619 17.062 16.897 17.133 -1.2722 9 6 2 0 0 0 1.0249 1 2727 2727 2.5775 0 1 299430 + 2041 21114 1062 1064 2384 2384 -0.02402324707668413 AERETRLWNKY 11 Unmodified _AERETRLWNKY_ 0 0 0 nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ENST00000464168.5_1_3:49362133-49365232:-|nuORF;nc|ENSG00000114316|Q13107-3|USP4 nc|ENSG00000114316|Q13107-2|USP4 nc|ENSG00000114316|Q13107-2|USP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2590026855469 3 489.256397 1464.74736 0.069528 3.4017E-05 0.18502 9.0521E-05 0.25455 0.00012454 489.2565335978941 14.09 0.27982 14.09 13.931 14.211 0 20 7 4 0 0 0 0.81736 1 2072 2072 1.3296 0.21989 1 2476300 2042 2783 1063 1065 2385 2385 0.0335773477784187 AERETRLWNKY 11 Unmodified _AERETRLWNKY_ 0 0 0 nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ENST00000464168.5_1_3:49362133-49365232:-|nuORF;nc|ENSG00000114316|Q13107-3|USP4 nc|ENSG00000114316|Q13107-2|USP4 nc|ENSG00000114316|Q13107-2|USP4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 489.256397 1464.74736 -0.51566 -0.00025229 0.85705 0.00041932 0.3414 0.00016703 489.2567803413507 15.058 0.27948 13.944 13.816 14.096 -1.1142 -0.04632 0.00040546 NaN 1.3296 18 7 4 NaN NaN NaN NaN 0 NaN NaN 0 1394900 2043 2783 1063 1065 0.0335773477784187 AERETRLWNKY 11 Unmodified _AERETRLWNKY_ 0 0 0 nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ENST00000464168.5_1_3:49362133-49365232:-|nuORF;nc|ENSG00000114316|Q13107-3|USP4 nc|ENSG00000114316|Q13107-2|USP4 nc|ENSG00000114316|Q13107-2|USP4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 489.256397 1464.74736 -0.47346 -0.00023164 0.76663 0.00037508 0.29317 0.00014344 489.2568284355656 15.159 0.24242 13.937 13.789 14.032 -1.2219 -0.05359 0.00027274 NaN 1.3296 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1154100 2044 2783 1063 1065 0.0335773477784187 AERFLHWK 8 Unmodified _AERFLHWK_ 0 0 0 ENST00000429951.5_1_11:113186690-113186780:+|nuORF ENST00000429951.5_1_11:113186690-113186780:+|nuORF ENST00000429951.5_1_11:113186690-113186780:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.774169921875 2 543.795801 1085.57705 NaN NaN NaN NaN NaN NaN NaN 16.854 1 15.582 15.082 16.082 -1.2722 0 0 0 0.21486 1 2449 2449 5.2307 0.33366 1 2045 9767 1064 1066 2386 2386 0.03768288636865691 AERFSQEL 8 Unmodified _AERFSQEL_ 0 0 0 CDKL2|p.G369Afs*20|1|0.35|ENSG00000138769|chr4:75597153-75597153|T/-|frameshift_variant;CDKL2|p.A366Lfs*23|1|0.39|ENSG00000138769|chr4:75597162-75597162|T/-|frameshift_variant;nc|ENSG00000138769|Q92772|CDKL2;ENSG00000138769|ENST00000307465|CDKL2 CDKL2|p.G369Afs*20|1|0.35|ENSG00000138769|chr4:75597153-75597153|T/-|frameshift_variant CDKL2|p.G369Afs*20|1|0.35|ENSG00000138769|chr4:75597153-75597153|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2568664550781 2 490.245806 978.47706 0.26764 0.00013121 0.042889 2.1026E-05 0.31052 0.00015223 490.2458336405471 74.619 1.0778 70.942 70.276 71.354 -3.6764 63 30 3 0 0 0 0.78482 1 14065 14065 32.305 8.2849 1 9689300 2046 472 1065 1067 2387 2387 -0.013039934875678227 AERFYTSGL 9 Unmodified _AERFYTSGL_ 0 0 0 REV__nc|ENSG00000172322|Q5QGZ9-4|CLEC12A REV__nc|ENSG00000172322|Q5QGZ9-4|CLEC12A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2601928710938 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 104.59 1 104.59 104.09 105.09 0 0 0 0 0.23508 1 20553 20553 11.64 0 1 + 2047 18282 1066 1068 2388 2388 -0.011194204534831442 AERGAFIDQS 10 Unmodified _AERGAFIDQS_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7689819335938 2 547.26727 1092.51999 0.51663 0.00028273 0.03314 1.8136E-05 0.54977 0.00030087 547.2672384062918 41.242 0.80391 41.242 40.885 41.689 0 57 22 3 0 0 0 0.27562 3 7704 7704;7751;7772 39.213 7.0465 1 4044700 2048 5802 1067 1069 2389;2390;2391 2389 -0.022572234301378558 AERGEDCH 8 Unmodified _AERGEDCH_ 0 0 0 ENST00000360833.5_1_16:67233165-67233273:+|nuORF ENST00000360833.5_1_16:67233165-67233273:+|nuORF ENST00000360833.5_1_16:67233165-67233273:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2315368652344 2 458.682516 915.350479 0.11867 5.4434E-05 -0.073323 -3.3632E-05 0.045352 2.0802E-05 458.68240612014 35.016 0.8739 32.763 32.427 33.301 -2.2527 58 24 3 0 0 0 0.95515 1 6203 6203 21.747 4.8044 1 5172500 2049 9015 1068 1070 2392 2392 -0.11058242984358913 AERGEDCH 8 Unmodified _AERGEDCH_ 0 0 0 ENST00000360833.5_1_16:67233165-67233273:+|nuORF ENST00000360833.5_1_16:67233165-67233273:+|nuORF ENST00000360833.5_1_16:67233165-67233273:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2303466796875 2 458.682516 915.350479 0.32983 0.00015129 -0.46482 -0.0002132 -0.13498 -6.1914E-05 458.68222681205907 35.037 0.83102 32.761 32.45 33.281 -2.2766 54 23 3 0 0 0 0.9455 1 6184 6184 23.148 0 1 3772200 2050 9015 1068 1070 2393 2393 -0.11058242984358913 AERGHPHPPP 10 Unmodified _AERGHPHPPP_ 0 0 0 REV__ENST00000400451.6_1_22:20760237-20760540:+|nuORF REV__ENST00000400451.6_1_22:20760237-20760540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7772216796875 2 547.778139 1093.54173 NaN NaN NaN NaN NaN NaN NaN 43.448 1 40.682 40.182 41.182 -2.7661 0 0 0 0.22527 1 7846 7846 21.537 0 1 + 2051 21353 1069 1071 2394 2394 -0.001303738909200547 AERGQPGRLS 10 Unmodified _AERGQPGRLS_ 0 0 0 ENST00000397786.6_1_17:60142513-60142633:-|nuORF ENST00000397786.6_1_17:60142513-60142633:-|nuORF ENST00000397786.6_1_17:60142513-60142633:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5604248046875 3 357.528228 1069.56285 NaN NaN NaN NaN NaN NaN NaN 20.104 1 20.104 19.604 20.604 0 0 0 0 0.22588 1 3314 3314 7.0371 1.9896 1 2052 9474 1070 1072 2395 2395 0.03085591417948308 AERGQQPPP 9 Unmodified _AERGQQPPP_ 0 0 0 ENSG00000130449|ENST00000252744|ZSWIM6;ZSWIM6|p.E613Rfs*5|1|0.2|ENSG00000130449|chr5:61526387-61526388|-/A|frameshift_variant;ZSWIM6|p.E613Sfs*7|1|0.32|ENSG00000130449|chr5:61526388-61526388|A/-|frameshift_variant ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27392578125 2 490.251423 978.488293 NaN NaN NaN NaN NaN NaN NaN 26.73 1 24.948 24.448 25.448 -1.7821 0 0 0 0.23508 1 4728 4728 11.64 2.8949 1 2053 3609 1071 1073 2396 2396 -0.0018117139344440147 AERGQQPPP 9 Unmodified _AERGQQPPP_ 0 0 0 ENSG00000130449|ENST00000252744|ZSWIM6;ZSWIM6|p.E613Rfs*5|1|0.2|ENSG00000130449|chr5:61526387-61526388|-/A|frameshift_variant;ZSWIM6|p.E613Sfs*7|1|0.32|ENSG00000130449|chr5:61526388-61526388|A/-|frameshift_variant ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25360107421875 2 490.251423 978.488293 NaN NaN NaN NaN NaN NaN NaN 26.771 1 24.849 24.349 25.349 -1.9222 0 0 0 0.23508 1 4447 4447 7.9102 0.62092 1 2054 3609 1071 1073 2397 2397 -0.0018117139344440147 AERGRVPPP 9 Unmodified _AERGRVPPP_ 0 0 0 ENSG00000186193|ENST00000409687|SAPCD2 ENSG00000186193|ENST00000409687|SAPCD2 ENSG00000186193|ENST00000409687|SAPCD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25543212890625 2 489.777608 977.540663 0.11203 5.4868E-05 -0.34168 -0.00016735 -0.22965 -0.00011248 489.77741634836366 16.674 1.5821 16.674 16.405 17.987 0 112 44 3 0 0 0 0.23009 1 2583 2583 55.503 23.197 1 16591000 2055 7043 1072 1074 2398 2398 0.050994117401728545 AERGRVPPP 9 Unmodified _AERGRVPPP_ 0 0 0 ENSG00000186193|ENST00000409687|SAPCD2 ENSG00000186193|ENST00000409687|SAPCD2 ENSG00000186193|ENST00000409687|SAPCD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2671203613281 2 489.777608 977.540663 0.0083456 4.0875E-06 -0.29798 -0.00014594 -0.28963 -0.00014185 489.77742404068914 17.958 1.771 16.647 16.307 18.078 -1.3109 139 50 5 0 0 0 0.6329 1 3089 3089 10.824 1.4408 1 13658000 2056 7043 1072 1074 2399 2399 0.050994117401728545 AERGWPRQS 9 Unmodified _AERGWPRQS_ 0 0 0 REV__ENST00000594808.1_1_19:44006416-44008305:-|nuORF REV__ENST00000594808.1_1_19:44006416-44008305:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7843017578125 2 543.775597 1085.53664 NaN NaN NaN NaN NaN NaN NaN 17.593 1 16.282 15.782 16.782 -1.3109 0 0 0 0.23508 1 2824 2824 6.2058 2.2614 1 + 2057 20355 1073 1075 2400 2400 -0.0027067775354225887 AERHITYEY 9 Unmodified _AERHITYEY_ 0 0 0 REV__ENSG00000136378|ENST00000388820|ADAMTS7 REV__ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 394.3008117675781 3 394.524372 1180.55129 -0.0299 -1.1796E-05 -0.26201 -0.00010337 -0.29191 -0.00011517 394.524426933526 30.171 0.56766 30.171 29.884 30.451 0 31 15 3 0 0 0 0.8825 1 5357 5357 2.7352 1.7729 1 1217500 + 2058 16326 1074 1076 2401 2401 -0.03176650396039804 AERHITYEY 9 Unmodified _AERHITYEY_ 0 0 0 REV__ENSG00000136378|ENST00000388820|ADAMTS7 REV__ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 394.524372 1180.55129 -0.076361 -3.0126E-05 -0.12241 -4.8294E-05 -0.19877 -7.842E-05 394.52430331480235 32.642 0.45689 30.412 30.189 30.646 -2.2305 0.084859 0.00025976 NaN 2.7352 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1601000 + 2059 16326 1074 1076 -0.03176650396039804 AERHITYEY 9 Unmodified _AERHITYEY_ 0 0 0 REV__ENSG00000136378|ENST00000388820|ADAMTS7 REV__ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 394.524372 1180.55129 0.2484 9.7999E-05 -0.73126 -0.0002885 -0.48286 -0.0001905 394.52412067685225 32.413 0.52823 30.387 30.114 30.643 -2.0264 0.059918 -0.00046085 NaN 2.7352 37 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1482700 + 2060 16326 1074 1076 -0.03176650396039804 AERHITYEY 9 Unmodified _AERHITYEY_ 0 0 0 REV__ENSG00000136378|ENST00000388820|ADAMTS7 REV__ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 394.524372 1180.55129 -0.13775 -5.4347E-05 -0.26036 -0.00010272 -0.39811 -0.00015707 394.5243505873922 32.487 0.5546 30.339 30.036 30.59 -2.1483 0.011583 9.649E-05 NaN 2.7352 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1334500 + 2061 16326 1074 1076 -0.03176650396039804 AERICSLFF 9 Unmodified _AERICSLFF_ 0 0 0 REV__ENST00000368685.5_1_1:153634023-153634080:+|nuORF REV__ENST00000368685.5_1_1:153634023-153634080:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7772827148438 2 543.276052 1084.53755 0.21971 0.00011936 0.94538 0.0005136 1.1651 0.00063296 543.2765181500528 45.403 0.81675 42.568 42.049 42.866 -2.8355 60 22 4 0 0 0 0.54354 1 8470 8470 16.942 16.942 1 9064100 + 2062 20946 1075 1077 2402 2402 -0.0013359942884108023 AERKAQGVLA 10 Unmodified _AERKAQGVLA_ 0 0 0 ENST00000467506.5_1_3:49158779-49159385:-|nuORF;ENSG00000172037|ENST00000305544|LAMB2 ENST00000467506.5_1_3:49158779-49159385:-|nuORF ENST00000467506.5_1_3:49158779-49159385:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2676391601562 2 521.803823 1041.59309 0.34553 0.0001803 -0.62941 -0.00032843 -0.28389 -0.00014813 521.8034569695465 22.085 0.31435 20.61 20.448 20.763 -1.4742 13 8 2 0 0 0 0.89697 1 3778 3778 11.495 1.4208 1 473660 2063 6189 1076 1078 2403 2403 0.07395950083150638 AERKGVLQA 9 Unmodified _AERKGVLQA_ 0 0 0 ENST00000478372.1_1_21:43373107-43373571:-|nuORF ENST00000478372.1_1_21:43373107-43373571:-|nuORF ENST00000478372.1_1_21:43373107-43373571:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.8649597167969 3 324.525936 970.555979 -0.063573 -2.0631E-05 0.15242 4.9463E-05 0.088843 2.8832E-05 324.5259502783969 23.18 0.30988 21.726 21.578 21.888 -1.4535 18 8 3 0 0 0 0.10537 1 3749 3749 29.082 10.708 1 1040400 2064 10317 1077 1079 2404 2404 0.06952278537369239 AERKGVLQA 9 Unmodified _AERKGVLQA_ 0 0 0 ENST00000478372.1_1_21:43373107-43373571:-|nuORF ENST00000478372.1_1_21:43373107-43373571:-|nuORF ENST00000478372.1_1_21:43373107-43373571:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 324.525936 970.555979 0.51182 0.0001661 -0.49801 -0.00016162 0.013819 4.4845E-06 324.52576830618057 23.335 0.36246 21.781 21.542 21.904 -1.5532 0.027611 -0.00040332 NaN 29.082 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 721720 2065 10317 1077 1079 0.06952278537369239 AERKKRRW 8 Unmodified _AERKKRRW_ 0 0 0 REV__ENST00000478509.1_1_X:153674683-153677303:+|nuORF REV__ENST00000478509.1_1_X:153674683-153677303:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.558349609375 3 377.228224 1128.66284 -0.23502 -8.8658E-05 -1.0806 -0.00040762 -1.3156 -0.00049628 377.22779396249723 33.508 0.38584 31.191 30.938 31.324 -2.3175 25 10 3 0 0 0 0.89628 1 6078 6078 0.12286 0 1 2263900 + 2066 22142 1078 1080 2405 2405 0.1036587354240055 AERKLLPLLKP 11 Unmodified _AERKLLPLLKP_ 0 0 0 ARHGEF15|p.P297Hfs*39|1|0.28|ENSG00000198844|chr17:8313205-8313205|C/-|frameshift_variant;ARHGEF15|p.L618Rfs*24|1|0.38|ENSG00000198844|chr17:8318643-8318643|T/-|frameshift_variant;ENSG00000198844|ENST00000361926|ARHGEF15 ARHGEF15|p.P297Hfs*39|1|0.28|ENSG00000198844|chr17:8313205-8313205|C/-|frameshift_variant ARHGEF15|p.P297Hfs*39|1|0.28|ENSG00000198844|chr17:8313205-8313205|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 639.4203491210938 2 639.418823 1276.82309 NaN NaN NaN NaN NaN NaN NaN 42.33 1 39.679 39.179 40.179 -2.651 0 0 0 0.23698 1 7619 7619 1.3295 0.25807 1 2067 209 1079 1081 2406 2406 0.1957536369607169 AERLFDNPD 9 Unmodified _AERLFDNPD_ 0 0 0 REV__ENSG00000111816|ENST00000606080|FRK REV__ENSG00000111816|ENST00000606080|FRK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2588500976562 2 538.753995 1075.49344 0.43996 0.00023703 0.14099 7.5957E-05 0.58095 0.00031299 538.7543073002429 28.498 1.9582 26.743 26.175 28.133 -1.7552 144 48 6 0 0 0 0.6329 1 4835 4835 10.824 1.4408 1 33451000 + 2068 15264 1080 1082 2407 2407 -0.041289123214710344 AERLGVQGLT 10 Unmodified _AERLGVQGLT_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2710571289062 2 522.29583 1042.57711 NaN NaN NaN NaN NaN NaN NaN 148.69 1 148.69 148.19 149.19 0 0 0 0 0.22588 1 29761 29761 8.1555 0 1 2069 1503 1081 1083 2408 2408 0.057522438462456194 AERLPDRTEA 10 Unmodified _AERLPDRTEA_ 0 0 0 MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 386.5352478027344 3 386.53516 1156.58365 -0.73714 -0.00028493 0.70168 0.00027122 -0.035457 -1.3705E-05 386.5353997932397 25.641 0.76237 23.788 23.465 24.227 -1.8534 52 21 3 0 0 0 0.42762 1 4177 4177 10.151 6.2742 1 8619800 2070 5772 1082 1084 2409 2409 0.011621370069633485 AERLPDRTEA 10 Unmodified _AERLPDRTEA_ 0 0 0 MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 386.53516 1156.58365 -0.072932 -2.8191E-05 0.22514 8.7025E-05 0.15221 5.8835E-05 386.5351456190908 23.799 0.68569 23.799 23.446 24.132 0 0.0057826 -0.00029324 NaN 10.151 68 19 5 NaN NaN NaN NaN 0 NaN NaN 0 8470200 2071 5772 1082 1084 0.011621370069633485 AERLRAPD 8 Unmodified _AERLRAPD_ 0 0 0 REV__ACHE|p.S430R|1|0.15|ENSG00000087085|chr7:100892599-100892599|T/G|missense_variant REV__ACHE|p.S430R|1|0.15|ENSG00000087085|chr7:100892599-100892599|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24664306640625 2 464.253966 926.493378 1.0083 0.0004681 -0.46871 -0.0002176 0.53956 0.00025049 464.2534634555402 26.518 0.78966 24.736 24.483 25.272 -1.7821 44 22 4 0 0 0 0.58432 1 4689 4689 23.148 1.4018 1 3744300 + 2072 12916 1083 1085 2410 2410 0.02719132469167107 AERLRAPD 8 Unmodified _AERLRAPD_ 0 0 0 REV__ACHE|p.S430R|1|0.15|ENSG00000087085|chr7:100892599-100892599|T/G|missense_variant REV__ACHE|p.S430R|1|0.15|ENSG00000087085|chr7:100892599-100892599|T/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.253966 926.493378 0.19493 9.0497E-05 1.0002 0.00046433 1.1951 0.00055483 464.2538193618836 24.953 0.67696 24.953 24.647 25.324 0 0.17606 0.00082658 NaN 23.148 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1399500 + 2073 12916 1083 1085 0.02719132469167107 AERLRAPD 8 Unmodified _AERLRAPD_ 0 0 0 REV__ACHE|p.S430R|1|0.15|ENSG00000087085|chr7:100892599-100892599|T/G|missense_variant REV__ACHE|p.S430R|1|0.15|ENSG00000087085|chr7:100892599-100892599|T/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.253966 926.493378 0.04761 2.2103E-05 0.18934 8.7901E-05 0.23695 0.00011 464.2539337450055 26.604 0.30597 24.682 24.503 24.808 -1.9222 -0.094301 7.3713E-05 NaN 23.148 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 606660 + 2074 12916 1083 1085 0.02719132469167107 AERMNSRI 8 Unmodified _AERMNSRI_ 0 0 0 tr|U7T478|U7T478_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00287PE=4SV=1 tr|U7T478|U7T478_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00287PE=4SV=1 tr|U7T478|U7T478_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00287PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26116943359375 2 488.753276 975.491998 0.15094 7.3774E-05 1.0721 0.00052399 1.223 0.00059776 488.75283371121105 99.682 2.1222 95.55 94.538 96.66 -4.1326 173 60 5 0 0 0 0.58432 1 19580 19580 23.148 2.6948 1 7091900 2075 26429 1084 1086 2411 2411 0.0032717510877091627 AERNKSPN 8 Unmodified _AERNKSPN_ 0 0 0 REV__TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant REV__TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2384033203125 2 458.235773 914.456993 NaN NaN NaN NaN NaN NaN NaN 47.5 1 47.5 47 48 0 0 0 0 0.21486 1 8959 8959 11.64 0.81637 1 + 2076 14800 1085 1087 2412 2412 -0.0036574442752908 AERPAGQPP 9 Unmodified _AERPAGQPP_ 0 0 0 ENSG00000250571|ENST00000340042|GLI4;ENST00000523812.1_1_8:144357822-144358971:+|nuORF ENSG00000250571|ENST00000340042|GLI4 ENSG00000250571|ENST00000340042|GLI4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5352478027344 2 461.740691 921.466829 -0.26652 -0.00012306 -0.86564 -0.0003997 -1.1322 -0.00052276 461.74089353675885 17.616 0.54725 16.305 16.066 16.614 -1.3109 23 15 2 0 0 0 0.76312 1 2852 2852 16.149 5.3252 1 416020 2077 7905 1086 1088 2413 2413 0.002954435778519837 AERPAGQPP 9 Unmodified _AERPAGQPP_ 0 0 0 ENSG00000250571|ENST00000340042|GLI4;ENST00000523812.1_1_8:144357822-144358971:+|nuORF ENSG00000250571|ENST00000340042|GLI4 ENSG00000250571|ENST00000340042|GLI4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5364990234375 2 461.740691 921.466829 -0.47575 -0.00021967 -0.67583 -0.00031206 -1.1516 -0.00053173 461.74093074873696 17.65 0.41125 16.378 16.109 16.52 -1.2722 17 11 2 0 0 0 0.58804 1 2619 2619 13.906 0.39817 1 336650 2078 7905 1086 1088 2414 2414 0.002954435778519837 AERPAGQPP 9 Unmodified _AERPAGQPP_ 0 0 0 ENSG00000250571|ENST00000340042|GLI4;ENST00000523812.1_1_8:144357822-144358971:+|nuORF ENSG00000250571|ENST00000340042|GLI4 ENSG00000250571|ENST00000340042|GLI4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.740691 921.466829 0.11015 5.0861E-05 -0.95349 -0.00044026 -0.84334 -0.0003894 461.7407660851897 16.416 0.58421 16.416 16.129 16.714 0 0.049716 -8.7243E-05 NaN 13.906 29 16 3 NaN NaN NaN NaN 0 NaN NaN 0 698690 2079 7905 1086 1088 0.002954435778519837 AERPHCDQ 8 Unmodified _AERPHCDQ_ 0 0 0 REV__ENST00000480549.5_1_1:36784746-36785403:+|nuORF REV__ENST00000480549.5_1_1:36784746-36785403:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7387390136719 2 478.206158 954.397763 -0.22054 -0.00010546 0.39923 0.00019091 0.17869 8.5451E-05 478.20630316965236 53.884 0.55484 51 50.595 51.15 -2.8837 54 15 5 0 0 0 8448 1 10287 10287 9.544 0 1 7344300 + 2080 22165 1087 1089 2415 2415 -0.0812596371337122 AERPHCDQ 8 Unmodified _AERPHCDQ_ 0 0 0 REV__ENST00000480549.5_1_1:36784746-36785403:+|nuORF REV__ENST00000480549.5_1_1:36784746-36785403:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7373352050781 2 478.206158 954.397763 0.050966 2.4372E-05 1.6472 0.0007877 1.6982 0.00081207 478.2070187859928 54.077 0.90356 50.942 50.559 51.463 -3.1352 65 25 5 0 0 0 8448 1 10029 10029 3.5871 0 1 15002000 + 2081 22165 1087 1089 2416 2416 -0.0812596371337122 AERPKYTFDFS 11 Unmodified _AERPKYTFDFS_ 0 0 0 TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 454.22100830078125 3 454.222582 1359.64592 NaN NaN NaN NaN NaN NaN NaN 33.267 1 30.949 30.449 31.449 -2.3175 0 0 0 0.22632 1 6080 6080 0.58532 0.54153 1 2082 1551 1088 1090 2417 2417 -0.01952136644717939 AERPLCVQ 8 Unmodified _AERPLCVQ_ 0 0 0 REV__ENST00000475467.1_1_22:46663936-46664530:+|nuORF REV__ENST00000475467.1_1_22:46663936-46664530:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2375793457031 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 50.236 1 47.355 46.855 47.855 -2.8811 0 0 0 0.21452 1 9528 9528 13.508 2.684 1 + 2083 22096 1089 1091 2418 2418 0.003732718485366604 AERPLMGLPP 10 Unmodified _AERPLMGLPP_ 0 0 0 REV__ENSG00000147234|ENST00000683843|FRMPD3 REV__ENSG00000147234|ENST00000683843|FRMPD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.283935546875 2 540.797152 1079.57975 0.2016 0.00010903 0.053604 2.8989E-05 0.25521 0.00013802 540.7972245219416 55.017 0.49845 55.017 54.694 55.193 0 21 13 2 0 0 0 0.73842 1 10433 10433 7.2892 1.5288 1 1162600 + 2084 16928 1090 1092 2419 2419 0.04314375979538454 AERPPSKPPP 10 Unmodified _AERPPSKPPP_ 0 0 0 ENST00000466110.5_1_2:74592577-74593714:-|nuORF;nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1 ENST00000466110.5_1_2:74592577-74593714:-|nuORF ENST00000466110.5_1_2:74592577-74593714:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2043151855469 3 359.201341 1074.58219 -0.34008 -0.00012216 0.58423 0.00020986 0.24415 8.7698E-05 359.20155863676115 15.621 2.1159 15.621 14.914 17.03 0 173 60 4 0 0 0 0.75765 1 2496 2496 3.3196 1.4133 1 6499800 2085 7614 1091 1093 2420 2420 0.04788547708835722 AERPPSKPPP 10 Unmodified _AERPPSKPPP_ 0 0 0 ENST00000466110.5_1_2:74592577-74593714:-|nuORF;nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1 ENST00000466110.5_1_2:74592577-74593714:-|nuORF ENST00000466110.5_1_2:74592577-74593714:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.205322265625 3 359.201341 1074.58219 -0.55765 -0.00020031 0.77845 0.00027962 0.2208 7.9311E-05 359.201632736337 16.948 2.5451 15.732 14.727 17.272 -1.2159 232 72 4 0 0 0 0.75212 1 2807 2807 5.0475 1.1712 1 9248000 2086 7614 1091 1093 2421 2421 0.04788547708835722 AERPQPFPK 9 Unmodified _AERPQPFPK_ 0 0 0 ENST00000340990.9_1_1:202920095-202927322:-|nuORF;ENST00000426229.1_2_1:202920095-202923414:-|nuORF ENST00000340990.9_1_1:202920095-202927322:-|nuORF ENST00000340990.9_1_1:202920095-202927322:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5598449707031 3 357.197819 1068.57163 -0.18669 -6.6687E-05 0.59765 0.00021348 0.41095 0.00014679 357.1979771339348 21.319 0.2792 19.934 19.793 20.072 -1.3847 10 7 2 0 0 0 0.87876 1 3356 3356 1.7423 0 1 222000 2087 8855 1092 1094 2422 2422 0.04008565054414248 AERPRRLVP 9 Unmodified _AERPRRLVP_ 0 0 0 REV__ENST00000474602.5_1_9:99381659-99381992:-|nuORF REV__ENST00000474602.5_1_9:99381659-99381992:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7799682617188 2 547.333082 1092.65161 0.38388 0.00021011 -0.26025 -0.00014244 0.12363 6.7668E-05 547.3328953370617 27.353 0.37882 27.353 27.183 27.562 0 18 10 2 0 0 0 0.80521 1 4803 4803 15.847 6.4641 1 1490200 + 2088 22085 1093 1095 2423 2423 0.10899051448268438 AERPRRLVP 9 Unmodified _AERPRRLVP_ 0 0 0 REV__ENST00000474602.5_1_9:99381659-99381992:-|nuORF REV__ENST00000474602.5_1_9:99381659-99381992:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.333082 1092.65161 0.34891 0.00019097 -0.15206 -8.3228E-05 0.19685 0.00010774 547.3329199455735 29.174 0.38586 27.281 27.088 27.473 -1.8928 -0.056732 0.0002154 NaN 10.824 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1177800 + 2089 22085 1093 1095 0.10899051448268438 AERPSPDVKA 10 Unmodified _AERPSPDVKA_ 0 0 0 nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.56024169921875 3 357.192734 1068.55637 0.22704 8.1096E-05 -0.91025 -0.00032513 -0.68321 -0.00024404 357.1923515643671 21.633 0.64268 20.158 19.806 20.448 -1.4742 27 17 3 0 0 0 0.91149 1 3635 3635 6.6235 5.8469 1 1283400 2090 5966 1094 1096 2424 2424 0.024836534665837462 AERQHRGPD 9 Unmodified _AERQHRGPD_ 0 0 0 REV__ENST00000575203.5_1_16:68034415-68034469:-|nuORF REV__ENST00000575203.5_1_16:68034415-68034469:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2816162109375 2 533.262853 1064.51115 0.59244 0.00031593 0.72581 0.00038705 1.3183 0.00070297 533.2633850038093 33.661 0.41884 31.514 31.288 31.707 -2.1468 15 11 2 0 0 0 0.58804 1 5854 5854 13.906 0 1 472010 + 2091 23199 1095 1097 2425 2425 -0.01852152275955632 AERQIAELH 9 Unmodified _AERQIAELH_ 0 0 0 ENSG00000203724|ENST00000367393|C1orf53 ENSG00000203724|ENST00000367393|C1orf53 ENSG00000203724|ENST00000367393|C1orf53 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.0751953125 3 356.192845 1065.55671 -0.40536 -0.00014438 0.71546 0.00025484 0.3101 0.00011046 356.1930455283876 34.32 0.59347 32.003 31.699 32.293 -2.3175 47 16 4 0 0 0 0.87511 1 6258 6258 2.2828 1.5851 1 8798300 2092 7542 1096 1098 2426 2426 0.026550731864290356 AERQIAELH 9 Unmodified _AERQIAELH_ 0 0 0 ENSG00000203724|ENST00000367393|C1orf53 ENSG00000203724|ENST00000367393|C1orf53 ENSG00000203724|ENST00000367393|C1orf53 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 356.192845 1065.55671 -0.25004 -8.9063E-05 0.96331 0.00034312 0.71327 0.00025406 356.193137695747 31.988 0.72725 31.988 31.706 32.433 0 -0.033069 0.00033733 NaN 2.2828 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 9316700 2093 7542 1096 1098 0.026550731864290356 AERQIAELH 9 Unmodified _AERQIAELH_ 0 0 0 ENSG00000203724|ENST00000367393|C1orf53 ENSG00000203724|ENST00000367393|C1orf53 ENSG00000203724|ENST00000367393|C1orf53 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 356.192845 1065.55671 0.20116 7.1653E-05 0.18384 6.5481E-05 0.385 0.00013713 356.1928655429038 34.208 0.61889 32.062 31.776 32.394 -2.1468 0.040461 -0.0004956 NaN 2.2828 49 17 4 NaN NaN NaN NaN 0 NaN NaN 0 12078000 2094 7542 1096 1098 0.026550731864290356 AERQIAELH 9 Unmodified _AERQIAELH_ 0 0 0 ENSG00000203724|ENST00000367393|C1orf53 ENSG00000203724|ENST00000367393|C1orf53 ENSG00000203724|ENST00000367393|C1orf53 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 356.192845 1065.55671 -0.31556 -0.0001124 0.6973 0.00024837 0.38175 0.00013598 356.19306147534536 34.248 0.59393 32.032 31.74 32.334 -2.2158 0.01101 5.308E-05 NaN 2.2828 50 16 4 NaN NaN NaN NaN 0 NaN NaN 0 9471500 2095 7542 1096 1098 0.026550731864290356 AERQMPLA 8 Unmodified _AERQMPLA_ 0 0 0 ENST00000590511.1_1_19:5717546-5720167:-|nuORF ENST00000590511.1_1_19:5717546-5720167:-|nuORF ENST00000590511.1_1_19:5717546-5720167:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2389831542969 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 54.922 1 54.922 54.422 55.422 0 0 0 0 0.21486 1 10474 10474 11.64 0 1 2096 11602 1097 1099 2427 2427 0.003732718485252917 AERRELLAQ 9 Unmodified _AERRELLAQ_ 0 0 0 REV__GABRR3|p.Y109Lfs*15|1|0.31|ENSG00000183185|chr3:98012548-98012549|-/A|frameshift_variant REV__GABRR3|p.Y109Lfs*15|1|0.31|ENSG00000183185|chr3:98012548-98012549|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7814331054688 2 543.306729 1084.59891 0.32056 0.00017417 0.33283 0.00018083 0.65339 0.00035499 543.3068856153872 31.122 0.45716 29.096 28.845 29.302 -2.0264 26 12 3 0 0 0 0.17935 1 5361 5361 39.95 3.4435 1 2457300 + 2097 23559 1098 1100 2428 2428 0.059990485947992056 AERRELLAQ 9 Unmodified _AERRELLAQ_ 0 0 0 REV__GABRR3|p.Y109Lfs*15|1|0.31|ENSG00000183185|chr3:98012548-98012549|-/A|frameshift_variant REV__GABRR3|p.Y109Lfs*15|1|0.31|ENSG00000183185|chr3:98012548-98012549|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7703247070312 2 543.306729 1084.59891 0.32056 0.00017417 0.33283 0.00018083 0.65339 0.00035499 543.3068856153872 31.122 0.45716 29.096 28.845 29.302 -2.0264 26 12 3 0 0 0 0.73481 1 5368 5368 19.362 4.5237 1 2457300 + 2098 23559 1098 1100 2429 2429 0.059990485947992056 AERRELLAQ 9 Unmodified _AERRELLAQ_ 0 0 0 REV__GABRR3|p.Y109Lfs*15|1|0.31|ENSG00000183185|chr3:98012548-98012549|-/A|frameshift_variant REV__GABRR3|p.Y109Lfs*15|1|0.31|ENSG00000183185|chr3:98012548-98012549|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.306729 1084.59891 0.37544 0.00020398 -0.22354 -0.00012145 0.1519 8.2527E-05 543.3067704435973 29.076 0.4191 29.076 28.81 29.229 0 -0.016772 -9.7337E-05 NaN 39.95 24 11 4 NaN NaN NaN NaN 0 NaN NaN 0 2524600 + 2099 23559 1098 1100 0.059990485947992056 AERRELLAQ 9 Unmodified _AERRELLAQ_ 0 0 0 REV__GABRR3|p.Y109Lfs*15|1|0.31|ENSG00000183185|chr3:98012548-98012549|-/A|frameshift_variant REV__GABRR3|p.Y109Lfs*15|1|0.31|ENSG00000183185|chr3:98012548-98012549|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.306729 1084.59891 0.56521 0.00030708 -0.31742 -0.00017246 0.24778 0.00013462 543.3065063426831 31.272 0.34869 29.155 28.965 29.313 -2.1167 0.062481 -0.00019935 NaN 39.95 18 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2399300 + 2100 23559 1098 1100 0.059990485947992056 AERRGKNR 8 Unmodified _AERRGKNR_ 0 0 0 REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.0086364746094 3 329.524929 985.552959 NaN NaN NaN NaN NaN NaN NaN 65.324 1 65.324 64.824 65.824 0 0 0 0 0.21486 1 12592 12592 3.2813 1.6287 1 + 2101 22093 1099 1101 2430 2430 0.059604482032341366 AERRLLKGT 9 Unmodified _AERRLLKGT_ 0 0 0 ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26953125 2 522.31964 1042.62473 0.53335 0.00027858 -1.0841 -0.00056626 -0.55077 -0.00028768 522.3191796826483 23.072 0.31889 21.519 21.372 21.691 -1.5532 12 8 2 0 0 0 0.85111 1 3980 3980 3.5965 1.7523 1 505010 2102 3888 1100 1102 2431 2431 0.1051194283706991 AERRLLKGT 9 Unmodified _AERRLLKGT_ 0 0 0 ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2689208984375 2 522.31964 1042.62473 -0.39542 -0.00020654 0.12517 6.5376E-05 -0.27025 -0.00014116 522.3195874426387 23.239 0.26838 21.451 21.324 21.593 -1.7886 10 7 2 0 0 0 0.87634 1 3735 3735 6.7232 2.3939 1 466740 2103 3888 1100 1102 2432 2432 0.1051194283706991 AERRLQPF 8 Unmodified _AERRLQPF_ 0 0 0 REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 508.2882385253906 2 508.785433 1015.55631 -0.74325 -0.00037815 0.7692 0.00039136 0.025952 1.3204E-05 508.785760738473 18.722 0.81447 17.397 17.187 18.002 -1.3251 68 22 5 0 0 0 1.0066 1 2818 2818 11.64 7.3111 1 3875600 + 2104 21881 1101 1103 2433 2433 0.04915698257218537 AERRLQPF 8 Unmodified _AERRLQPF_ 0 0 0 REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 508.785433 1015.55631 0.1335 6.7924E-05 -0.20538 -0.00010449 -0.071878 -3.657E-05 508.7852641962838 17.384 1.2348 17.384 17.1 18.335 0 -0.079728 -0.00041487 NaN 15.847 70 34 3 NaN NaN NaN NaN 0 NaN NaN 0 7692000 + 2105 21881 1101 1103 0.04915698257218537 AERRLQPF 8 Unmodified _AERRLQPF_ 0 0 0 REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 508.785433 1015.55631 -0.056844 -2.8922E-05 0.086951 4.424E-05 0.030107 1.5318E-05 508.78543560880144 18.92 0.9768 17.609 17.282 18.258 -1.3109 0.14592 -0.0001174 NaN 15.847 74 27 5 NaN NaN NaN NaN 0 NaN NaN 0 3931900 + 2106 21881 1101 1103 0.04915698257218537 AERRPWPP 8 Unmodified _AERRPWPP_ 0 0 0 ENST00000529601.5_1_11:64879440-64881038:+|nuORF ENST00000529601.5_1_11:64879440-64881038:+|nuORF ENST00000529601.5_1_11:64879440-64881038:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0504455566406 3 336.850643 1007.5301 -0.32564 -0.00010969 -1.0262 -0.00034566 -1.3518 -0.00045536 336.8502777411062 34.463 0.87125 32.247 31.984 32.856 -2.2158 80 24 6 0 0 0 1.0265 1 5990 5990 1.6526 1.302 1 45274000 2107 10947 1102 1104 2434 2434 0.02663429085748703 AERRYSVY 8 Unmodified _AERRYSVY_ 0 0 0 REV__ENSG00000156395|ENST00000369701|SORCS3 REV__ENSG00000156395|ENST00000369701|SORCS3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2644653320312 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 76.977 1 73.562 73.062 74.062 -3.4151 0 0 0 0.21486 1 15026 15026 10.183 0.83596 1 + 2108 17257 1103 1105 2435 2435 3.401640651645721E-05 AERSAIYVA 9 Unmodified _AERSAIYVA_ 0 0 0 ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;ACAD11|p.W537Mfs*57|1|0.25|ENSG00000240303|chr3:132603241-132603242|-/T|frameshift_variant;nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11 ENST00000471702.2_2_3:132339980-132400782:-|nuORF ENST00000471702.2_2_3:132339980-132400782:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2730712890625 2 490.263999 978.513445 -0.11981 -5.8738E-05 -1.6863 -0.00082671 -1.8061 -0.00088545 490.26323209251046 53.914 0.31266 51.03 50.803 51.116 -2.8837 19 8 3 0 0 0 0.41266 1 10279 10279 24.991 4.5373 1 24134000 2109 28 1104 1106 2436 2436 0.023328834091216777 AERSIEEVY 9 Unmodified _AERSIEEVY_ 0 0 0 ENST00000510927.5_1_4:106967729-107168455:-|nuORF;nc|ENSG00000145348|Q8TEA7-3|TBCK;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK ENST00000510927.5_1_4:106967729-107168455:-|nuORF ENST00000510927.5_1_4:106967729-107168455:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7849731445312 2 548.269478 1094.5244 0.2536 0.00013904 -1.121 -0.00061463 -0.86743 -0.00047558 548.2690372639818 62.459 0.94139 59.497 58.974 59.916 -2.9614 49 26 3 0 0 0 0.73481 1 12038 12038 14.405 0.49933 1 3019200 2110 4603 1105 1107 2437 2437 -0.019077590072356543 AERSMMSAY 9 Unmodified _AERSMMSAY_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6893920898438 2 523.225702 1044.43685 0.25448 0.00013315 0.085685 4.4833E-05 0.34017 0.00017798 523.2258939819612 52.323 0.42783 52.323 52.145 52.573 0 16 11 2 0 0 0 0.55979 1 9956 9956 15.847 1.0089 1 2312200 2111 5189 1106 1108 2438 2438 -0.08358999474012307 AERSMMSAY 9 Unmodified _AERSMMSAY_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.686767578125 2 523.225702 1044.43685 0.04621 2.4178E-05 0.9054 0.00047373 0.95161 0.00049791 523.226085359821 55.65 0.54783 52.513 52.251 52.799 -3.1377 18 15 2 0 0 0 0.80521 1 10375 10375 15.847 5.7733 1 1534600 2112 5189 1106 1108 2439 2439 -0.08358999474012307 AERSMMSAY 9 Unmodified _AERSMMSAY_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.225702 1044.43685 -0.54667 -0.00028603 1.4353 0.00075098 0.88863 0.00046495 523.2262867146643 55.64 0.52157 52.451 52.217 52.738 -3.1895 0.022121 0.00057463 NaN 15.847 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2658300 2113 5189 1106 1108 -0.08358999474012307 AERSPVDVS 9 Unmodified _AERSPVDVS_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2460021972656 2 480.243264 958.471974 0.11615 5.578E-05 -0.42101 -0.00020219 -0.30486 -0.00014641 480.2430155524691 32.892 0.69718 30.661 30.259 30.956 -2.2305 59 19 4 0 0 0 0.43219 1 6009 6009 23.79 9.3844 1 10369000 2114 1369 1107 1109 2440 2440 -0.008922973501853448 AERSPVDVS 9 Unmodified _AERSPVDVS_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2461853027344 2 480.243264 958.471974 0.2628 0.00012621 -0.48211 -0.00023153 -0.21931 -0.00010532 480.24300525993715 32.835 1.1517 30.688 29.82 30.972 -2.1468 66 32 3 0 0 0 0.24263 2 5696 5650;5696 34.932 12.274 1 9064100 2115 1369 1107 1109 2441;2442 2442 -0.008922973501853448 AERSPVDVS 9 Unmodified _AERSPVDVS_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2457275390625 2 480.243264 958.471974 0.39008 0.00018733 -0.58877 -0.00028275 -0.19869 -9.542E-05 480.24297372992413 32.871 0.76215 30.655 30.282 31.044 -2.2158 53 21 3 0 0 0 0.24263 1 5712 5712 34.932 6.4376 1 8595300 2116 1369 1107 1109 2443 2443 -0.008922973501853448 AERSTAPSDLR 11 Unmodified _AERSTAPSDLR_ 0 0 0 ENST00000307145.3_2_15:31665219-31665552:+|nuORF ENST00000307145.3_2_15:31665219-31665552:+|nuORF ENST00000307145.3_2_15:31665219-31665552:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2993774414062 2 601.809833 1201.60511 1.2004 0.0007224 -0.5649 -0.00033996 0.63549 0.00038244 601.8094979439387 19.861 0.34298 18.464 18.242 18.585 -1.3966 15 9 2 0 0 0 0.66095 1 3316 3316 14.405 0.49933 1 2769900 2117 8612 1108 1110 2444 2444 0.012375220356261707 AERSTPCCSQY 11 Unmodified _AERSTPCCSQY_ 0 0 0 REV__ENST00000431297.1_1_21:15134673-15136650:+|nuORF REV__ENST00000431297.1_1_21:15134673-15136650:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7528076171875 2 622.755355 1243.49616 NaN NaN NaN NaN NaN NaN NaN 33.002 1 33.002 32.502 33.502 0 0 0 0 0.23379 1 6012 6012 5.2969 2.0156 1 + 2118 21617 1109 1111 2445 2445 -0.11585148250469501 AERSYKSQI 9 Unmodified _AERSYKSQI_ 0 0 0 ENSG00000135951|ENST00000393483|TSGA10;ENST00000489546.5_1_2:99635091-99688291:-|nuORF ENSG00000135951|ENST00000393483|TSGA10 ENSG00000135951|ENST00000393483|TSGA10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2744750976562 2 541.285463 1080.55637 0.40893 0.00022135 -0.95601 -0.00051747 -0.54708 -0.00029613 541.2848432514536 67.798 0.66586 64.472 64.172 64.838 -3.3268 22 18 2 0 0 0 0.77732 1 12823 12823 18.135 0 1 843040 2119 3969 1110 1112 2446 2446 0.019316534665676954 AERTDGGPL 9 Unmodified _AERTDGGPL_ 0 0 0 REV__ENST00000549441.6_1_12:49740721-49740880:+|nuORF REV__ENST00000549441.6_1_12:49740721-49740880:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2296447753906 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.486 1 39.88 39.38 40.38 -2.606 0 0 0 0.19638 1 7644 7644 0.12781 0.063827 1 + 2120 22918 1111 1113 2447 2447 -0.0148856652166387 AERTGELYR 9 Unmodified _AERTGELYR_ 0 0 0 REV__ENSG00000013392|ENST00000369724|RWDD2A REV__ENSG00000013392|ENST00000369724|RWDD2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7843017578125 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 54.304 1 51.42 50.92 51.92 -2.8837 0 0 0 0.20628 1 10361 10361 21.747 3.6117 1 + 2121 13948 1112 1114 2448 2448 0.008587693238041538 AERVAMATA 9 Unmodified _AERVAMATA_ 0 0 0 nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2 nc|ENSG00000080561|Q9UJV3-2|MID2 nc|ENSG00000080561|Q9UJV3-2|MID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2369079589844 2 460.236927 918.459301 0.25367 0.00011675 -0.026095 -1.201E-05 0.22758 0.00010474 460.23690636442586 30.185 0.46203 30.185 29.884 30.346 0 20 12 2 0 0 0 0.11836 2 5403 5378;5403 49.527 16.742 1 1843500 2122 1615 1113 1115 2449;2450 2450 -0.0031903201409022586 AERVAMATA 9 Unmodified _AERVAMATA_ 0 0 0 nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2 nc|ENSG00000080561|Q9UJV3-2|MID2 nc|ENSG00000080561|Q9UJV3-2|MID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24615478515625 2 460.236927 918.459301 0.1083 4.9842E-05 0.37227 0.00017133 0.48056 0.00022117 460.2370065836579 32.181 0.60288 29.951 29.691 30.294 -2.2305 29 16 3 0 0 0 0.13904 2 5871 5827;5871 45.74 6.4133 1 2087400 2123 1615 1113 1115 2451;2452 2452 -0.0031903201409022586 AERVAMATA 9 Unmodified _AERVAMATA_ 0 0 0 nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2 nc|ENSG00000080561|Q9UJV3-2|MID2 nc|ENSG00000080561|Q9UJV3-2|MID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23681640625 2 460.236927 918.459301 0.22237 0.00010234 0.10723 4.9351E-05 0.3296 0.00015169 460.2369643269945 32.062 0.52495 30.035 29.798 30.323 -2.0264 31 14 3 0 0 0 0.15889 3 5523 5523;5526;5573 31.728 25.337 1 2139800 2124 1615 1113 1115 2453;2454;2455 2453 -0.0031903201409022586 AERVAMATA 9 Unmodified _AERVAMATA_ 0 0 0 nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2 nc|ENSG00000080561|Q9UJV3-2|MID2 nc|ENSG00000080561|Q9UJV3-2|MID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.22808837890625 2 460.236927 918.459301 0.45959 0.00021152 -0.2884 -0.00013273 0.1712 7.8791E-05 460.23681436902535 32.175 0.62762 30.026 29.688 30.316 -2.1483 27 17 2 0 0 0 0.11828 4 5592 5532;5573;5575;5592 49.554 16.742 1 1641500 2125 1615 1113 1115 2456;2457;2458;2459 2459 -0.0031903201409022586 AERVLAEAA 9 Unmodified _AERVLAEAA_ 0 0 0 REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2560119628906 2 465.256174 928.497795 0.34697 0.00016143 -0.46247 -0.00021517 -0.1155 -5.3737E-05 465.2559334161572 42.386 0.59082 42.386 42.048 42.639 0 36 16 3 0 0 0 0.095704 1 7926 7926 57.249 13.477 1 3134300 + 2126 14796 1114 1116 2460 2460 0.030685968920693085 AERVLAEAA 9 Unmodified _AERVLAEAA_ 0 0 0 REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23907470703125 2 465.256174 928.497795 -0.074205 -3.4524E-05 -0.047385 -2.2046E-05 -0.12159 -5.6571E-05 465.2560959423026 45.07 0.53629 42.28 41.954 42.49 -2.79 30 14 3 0 0 0 0.095704 3 8459 8435;8459;8486 57.249 15.409 1 2390700 + 2127 14796 1114 1116 2461;2462;2463 2462 0.030685968920693085 AERVLAEAA 9 Unmodified _AERVLAEAA_ 0 0 0 REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2558898925781 2 465.256174 928.497795 -0.064581 -3.0047E-05 -0.23525 -0.00010945 -0.29983 -0.0001395 465.25611791511335 45.073 0.57214 42.208 41.877 42.449 -2.8653 36 15 3 0 0 0 0.043105 2 8183 8115;8183 74.2 26.451 1 1695500 + 2128 14796 1114 1116 2464;2465 2465 0.030685968920693085 AERVLAEAA 9 Unmodified _AERVLAEAA_ 0 0 0 REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25604248046875 2 465.256174 928.497795 -0.10695 -4.9759E-05 -0.085844 -3.9939E-05 -0.19279 -8.9698E-05 465.2562434181359 45.071 0.73932 42.323 41.883 42.623 -2.7475 38 20 3 0 0 0 0.095704 3 8161 8114;8141;8161 57.249 13.477 1 2277100 + 2129 14796 1114 1116 2466;2467;2468 2468 0.030685968920693085 AERVLAEAA 9 Unmodified _AERVLAEAA_ 0 0 0 REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 465.256174 928.497795 -0.074205 -3.4524E-05 -0.047385 -2.2046E-05 -0.12159 -5.6571E-05 465.2560959423026 45.07 0.53629 42.28 41.954 42.49 -2.79 -0.019409 0.00017804 NaN 74.2 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2390700 + 2130 14796 1114 1116 0.030685968920693085 AERVLDLWD 9 Unmodified _AERVLDLWD_ 0 0 0 REV__ENST00000582201.5_1_17:62781409-62811241:-|nuORF REV__ENST00000582201.5_1_17:62781409-62811241:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.13580322265625 3 372.860984 1115.56112 -0.15783 -5.8848E-05 0.14538 5.4208E-05 -0.012445 -4.6402E-06 372.86098387695574 31.802 0.62224 31.802 31.53 32.153 0 50 17 4 0 0 0 0.88313 1 5708 5708 0.18151 0 1 13912000 + 2131 23248 1115 1117 2469 2469 0.007965376093125087 AERVQKIAQ 9 Unmodified _AERVQKIAQ_ 0 0 0 REV__ENSG00000121281|ENST00000673801|ADCY7 REV__ENSG00000121281|ENST00000673801|ADCY7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279296875 2 521.803823 1041.59309 0.26179 0.0001366 -0.55343 -0.00028878 -0.29164 -0.00015218 521.803682239255 36.871 0.98066 36.871 36.42 37.4 0 77 27 5 0 0 0 0.71913 1 6866 6866 10.8 0 1 66459000 + 2132 15649 1116 1118 2470 2470 0.073959500831279 AERVVNQY 8 Unmodified _AERVVNQY_ 0 0 0 SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant;ENST00000476539.5_1_13:37599405-37602382:-|nuORF;SUPT20H|p.P464Hfs*86|1|0.27|ENSG00000102710|chr13:37024381-37024381|G/-|frameshift_variant;SUPT20H|p.N613Ifs*8|1|0.2|ENSG00000102710|chr13:37019376-37019376|T/-|frameshift_variant;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;ENSG00000102710|ENST00000350612|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2552795410156 2 489.753798 977.493044 0.23677 0.00011596 -0.35762 -0.00017514 -0.12084 -5.9183E-05 489.7536948301467 28.102 0.51769 28.102 27.835 28.352 0 31 14 3 0 0 0 0.075417 2 4994 4947;4994 71.922 29.828 1 2089300 2133 2141 1117 1119 2471;2472 2472 0.0033971274932582674 AERVVNQY 8 Unmodified _AERVVNQY_ 0 0 0 SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant;ENST00000476539.5_1_13:37599405-37602382:-|nuORF;SUPT20H|p.P464Hfs*86|1|0.27|ENSG00000102710|chr13:37024381-37024381|G/-|frameshift_variant;SUPT20H|p.N613Ifs*8|1|0.2|ENSG00000102710|chr13:37019376-37019376|T/-|frameshift_variant;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;ENSG00000102710|ENST00000350612|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27203369140625 2 489.753798 977.493044 0.63297 0.00031 -0.65596 -0.00032126 -0.02299 -1.126E-05 489.7535237581839 30.181 0.55774 28.064 27.701 28.259 -2.1167 36 15 3 0 0 0 0.042072 4 5447 5402;5410;5447;5460 88.954 42.933 1 2327300 2134 2141 1117 1119 2473;2474;2475;2476 2475 0.0033971274932582674 AERVVNQY 8 Unmodified _AERVVNQY_ 0 0 0 SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant;ENST00000476539.5_1_13:37599405-37602382:-|nuORF;SUPT20H|p.P464Hfs*86|1|0.27|ENSG00000102710|chr13:37024381-37024381|G/-|frameshift_variant;SUPT20H|p.N613Ifs*8|1|0.2|ENSG00000102710|chr13:37019376-37019376|T/-|frameshift_variant;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;ENSG00000102710|ENST00000350612|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2646179199219 2 489.753798 977.493044 0.06852 3.3558E-05 0.8705 0.00042633 0.93902 0.00045989 489.75384637998394 47.051 0.41255 44.21 44.006 44.419 -2.8409 22 11 3 0 0 0 0.53444 1 8845 8845 26.341 0.94196 1 2274500 2135 2141 1117 1119 2477 2477 0.0033971274932582674 AERVVNQY 8 Unmodified _AERVVNQY_ 0 0 0 SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant;ENST00000476539.5_1_13:37599405-37602382:-|nuORF;SUPT20H|p.P464Hfs*86|1|0.27|ENSG00000102710|chr13:37024381-37024381|G/-|frameshift_variant;SUPT20H|p.N613Ifs*8|1|0.2|ENSG00000102710|chr13:37019376-37019376|T/-|frameshift_variant;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;ENSG00000102710|ENST00000350612|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25537109375 2 489.753798 977.493044 0.44583 0.00021835 -0.38171 -0.00018695 0.064114 3.14E-05 489.7535880343073 29.969 0.56118 28.076 27.785 28.346 -1.8928 40 15 3 0 0 0 0.1027 2 5142 5090;5142 62.573 24.599 1 2315700 2136 2141 1117 1119 2478;2479 2479 0.0033971274932582674 AERVVNQY 8 Unmodified _AERVVNQY_ 0 0 0 SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant;ENST00000476539.5_1_13:37599405-37602382:-|nuORF;SUPT20H|p.P464Hfs*86|1|0.27|ENSG00000102710|chr13:37024381-37024381|G/-|frameshift_variant;SUPT20H|p.N613Ifs*8|1|0.2|ENSG00000102710|chr13:37019376-37019376|T/-|frameshift_variant;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;ENSG00000102710|ENST00000350612|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant SUPT20H|p.D401G|1|0.43|ENSG00000102710|chr13:37026213-37026213|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2549743652344 2 489.753798 977.493044 0.30777 0.00015073 -0.2747 -0.00013453 0.033076 1.6199E-05 489.7536362569674 30.104 0.66839 28.03 27.692 28.36 -2.0743 40 18 3 0 0 0 0.077776 3 5134 5092;5134;5178 81.89 35.869 1 1997200 2137 2141 1117 1119 2480;2481;2482 2481 0.0033971274932582674 AERWLAGA 8 Unmodified _AERWLAGA_ 0 0 0 REV__ENST00000379933.7_1_6:7189423-7211051:+|nuORF REV__ENST00000379933.7_1_6:7189423-7211051:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2337341308594 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 50.305 1 47.424 46.924 47.924 -2.8811 0 0 0 0.21486 1 9545 9545 8.5933 2.2392 1 + 2138 21146 1118 1120 2483 2483 0.009123624117592044 AERWLCSL 8 Unmodified _AERWLCSL_ 0 0 0 REV__ENST00000392001.6_1_2:238499158-238499395:-|nuORF REV__ENST00000392001.6_1_2:238499158-238499395:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2667541503906 2 489.247295 976.480036 0.13749 6.7267E-05 -0.63863 -0.00031245 -0.50114 -0.00024518 489.24699367146206 39.514 0.52805 37.072 36.788 37.316 -2.4419 35 14 3 0 0 0 0.73936 1 7018 7018 8.5933 0.68312 1 3836700 + 2139 21209 1119 1121 2484 2484 -0.009144416344156525 AERWQQFIMT 10 Unmodified _AERWQQFIMT_ 0 0 0 REV__ENST00000455877.5_1_7:43918817-43965754:-|nuORF REV__ENST00000455877.5_1_7:43918817-43965754:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21771240234375 3 437.216774 1308.62849 -0.08906 -3.8938E-05 0.41502 0.00018145 0.32596 0.00014252 437.5507578180542 41.59 1.4409 38.939 38.166 39.607 -2.651 71 40 5 0 0 0 0.75679 1 7400 7400 3.5871 0.26742 1 2971600 + 2140 21847 1120 1122 2485 2485 -0.01347755451388366 AERWRVPN 8 Unmodified _AERWRVPN_ 0 0 0 REV__nc|ENSG00000182979|Q13330-2|MTA1 REV__nc|ENSG00000182979|Q13330-2|MTA1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.1546936035156 3 343.185914 1026.53591 NaN NaN NaN NaN NaN NaN NaN 58.329 1 55.419 54.919 55.919 -2.9105 0 0 0 0.21486 1 11202 11202 3.5965 0.60125 1 + 2141 24202 1121 1123 2486 2486 0.02370527597418004 AERYDDMAA 9 Unmodified _AERYDDMAA_ 0 0 0 ENSG00000170027|ENST00000307630|YWHAG;YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2593383789062 2 521.218931 1040.42331 0.20826 0.00010855 -0.77615 -0.00040455 -0.56789 -0.00029599 521.2186892912716 33.713 1.5528 33.713 33.271 34.823 0 134 44 5 0 0 0 0.094316 1 6118 6118 57.722 32.323 1 188460000 2142 6032 1122 1124 2487 2487 -0.09528533981620058 AERYDDMAA 9 Unmodified _AERYDDMAA_ 0 0 0 ENSG00000170027|ENST00000307630|YWHAG;YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2593994140625 2 521.218931 1040.42331 -0.64535 -0.00033637 0.11653 6.0738E-05 -0.52882 -0.00027563 521.219099974133 36.08 1.0253 33.686 33.346 34.371 -2.3938 107 28 5 0 0 0 0.19171 1 6621 6621 38.176 17.722 1 111530000 2143 6032 1122 1124 2488 2488 -0.09528533981620058 AERYDDMAA 9 Unmodified _AERYDDMAA_ 0 0 0 ENSG00000170027|ENST00000307630|YWHAG;YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27197265625 2 521.218931 1040.42331 -0.57995 -0.00030228 0.06672 3.4776E-05 -0.51323 -0.0002675 521.2191037456013 36.12 1.4855 33.78 33.346 34.832 -2.3395 122 42 5 0 0 0 0.094316 1 6418 6418 57.722 32.323 1 107830000 2144 6032 1122 1124 2489 2489 -0.09528533981620058 AERYDDMAA 9 Unmodified _AERYDDMAA_ 0 0 0 ENSG00000170027|ENST00000307630|YWHAG;YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.272216796875 2 521.218931 1040.42331 0.33707 0.00017569 -0.81032 -0.00042235 -0.47325 -0.00024667 521.2186469461755 36.041 1.4832 33.764 33.352 34.835 -2.2766 123 41 5 0 0 0 0.62314 1 6422 6422 11.495 1.4208 1 96470000 2145 6032 1122 1124 2490 2490 -0.09528533981620058 AERYYNELRRR 11 Unmodified _AERYYNELRRR_ 0 0 0 ENSG00000115423|ENST00000389394|DNAH6;DNAH6|p.S3773Lfs*5|1|0.09|ENSG00000115423|chr2:84796377-84796377|T/-|frameshift_variant;DNAH6|p.R2682Kfs*27|1|0.42|ENSG00000115423|chr2:84701316-84701317|-/A|frameshift_variant;DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 509.28570556640625 3 509.270929 1524.79096 -0.1718 -8.7493E-05 2.3048 0.0011738 2.133 0.0010863 509.6061793132039 45.105 0.28277 42.357 42.306 42.588 -2.7475 10 7 2 0 0 0 0.81822 1 8185 8185 1.2148 0.70888 1 792280 2146 2855 1123 1125 2491 2491 0.049553442749584065 AESATYCLV 9 Unmodified _AESATYCLV_ 0 0 0 ENSG00000119927|ENST00000348367|GPAM;ENST00000369425.5_1_10:113914335-113914473:-|nuORF ENSG00000119927|ENST00000348367|GPAM ENSG00000119927|ENST00000348367|GPAM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7224426269531 2 478.723318 955.432083 -0.19293 -9.2361E-05 -1.2104 -0.00057943 -1.4033 -0.00067179 478.72229065546213 109.6 0.70671 105.15 104.78 105.49 -4.4518 26 19 2 0 0 0 0.25702 1 21033 21033 34.102 3.8776 1 901920 2147 3107 1124 1126 2492 2492 -0.047415603451327115 AESATYHR 8 Unmodified _AESATYHR_ 0 0 0 ENST00000397031.2_1_2:182825941-182826409:-|nuORF ENST00000397031.2_1_2:182825941-182826409:-|nuORF ENST00000397031.2_1_2:182825941-182826409:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1517333984375 3 312.150758 933.430444 NaN NaN NaN NaN NaN NaN NaN 67.083 1 63.756 63.256 64.256 -3.3268 0 0 0 0.21486 1 12644 12644 1.4819 1.0236 1 2148 9456 1125 1127 2493 2493 -0.03893433318864936 AESCEGFY 8 Carbamidomethyl (C) _AESC(Carbamidomethyl (C))EGFY_ AESC(1)EGFY AESC(47)EGFY 0 1 0 REV__AP3M1|p.D188Nfs*31|1|0.11|ENSG00000185009|chr10:74134037-74134052|TATAATTGCGTCTATT/-|frameshift_variant REV__AP3M1|p.D188Nfs*31|1|0.11|ENSG00000185009|chr10:74134037-74134052|TATAATTGCGTCTATT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7652587890625 2 481.68165 961.348747 NaN NaN NaN NaN NaN NaN NaN 58.686 1 58.686 58.186 59.186 0 0 0 0 0.087131 1 11235 11235 46.921 6.4723 1 + 2149 13074 1126 1128 2494 2494 14 -0.13347296792971974 AESDHCPQ 8 Unmodified _AESDHCPQ_ 0 0 0 REV__ENSG00000186834|ENST00000332499|HEXIM1 REV__ENSG00000186834|ENST00000332499|HEXIM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 444.2237243652344 2 443.671617 885.328681 -0.12474 -5.5343E-05 -1.8481 -0.00081993 -1.9728 -0.00087527 443.67063388621136 65.063 0.4896 65.063 64.855 65.345 0 20 13 2 0 0 0 1.0066 1 12584 12584 11.64 0.81637 1 1625300 + 2150 19056 1127 1129 2495 2495 -0.1185704773292855 AESDIDSEES 10 Unmodified _AESDIDSEES_ 0 0 0 REV__ENST00000594213.5_1_19:6380294-6381826:-|nuORF REV__ENST00000594213.5_1_19:6380294-6381826:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2789306640625 2 541.212023 1080.40949 -0.014965 -8.0993E-06 -0.45774 -0.00024773 -0.4727 -0.00025583 541.2116958122143 107.9 0.86139 103.49 103.16 104.02 -4.4121 76 24 4 0 0 0 0.78938 1 20761 20761 16.149 0 1 15522000 + 2151 23364 1128 1130 2496 2496 -0.12749532999714575 AESDKGSR 8 Unmodified _AESDKGSR_ 0 0 0 REV__ENSG00000142039|ENST00000269967|CCDC97 REV__ENSG00000142039|ENST00000269967|CCDC97 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.23858642578125 2 425.206681 848.398809 NaN NaN NaN NaN NaN NaN NaN 35.594 1 33.341 32.841 33.841 -2.2527 0 0 0 0.21486 1 6275 6275 8.5933 0 1 + 2152 16655 1129 1131 2497 2497 -0.031454260727969086 AESDPHVTEP 10 Unmodified _AESDPHVTEP_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2 nc|ENSG00000164889|P04920-2|SLC4A2 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2796020507812 2 541.24346 1080.47237 0.34148 0.00018482 -0.88289 -0.00047786 -0.54142 -0.00029304 541.2434453567621 29.773 0.62431 29.773 29.506 30.13 0 30 17 3 0 0 0 0.75233 1 5296 5296 29.082 19.008 1 772930 2153 5572 1130 1132 2498 2498 -0.0646492242099157 AESDPHVTEP 10 Unmodified _AESDPHVTEP_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2 nc|ENSG00000164889|P04920-2|SLC4A2 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2792358398438 2 541.24346 1080.47237 0.33636 0.00018205 -0.42666 -0.00023093 -0.090301 -4.8875E-05 541.2436015624961 31.991 0.91433 29.964 29.409 30.323 -2.0264 53 25 3 0 0 0 0.12549 1 5534 5534 71.922 53.776 1 776680 2154 5572 1130 1132 2499 2499 -0.0646492242099157 AESDPHVTEP 10 Unmodified _AESDPHVTEP_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2 nc|ENSG00000164889|P04920-2|SLC4A2 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2788696289062 2 541.24346 1080.47237 0.55122 0.00029834 -0.75177 -0.00040689 -0.20055 -0.00010855 541.2433036188474 32.152 0.69603 30.003 29.585 30.281 -2.1483 35 19 4 0 0 0 0.13304 2 5583 5541;5583 69.105 45.084 1 676950 2155 5572 1130 1132 2500;2501 2501 -0.0646492242099157 AESDVVDALY 10 Unmodified _AESDVVDALY_ 0 0 0 REV__nc|ENSG00000115677|Q00341-2|HDLBP REV__nc|ENSG00000115677|Q00341-2|HDLBP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2607421875 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 18.841 1 17.516 17.016 18.016 -1.3251 0 0 0 0.22588 1 2844 2844 9.3831 2.0939 1 + 2156 15445 1131 1133 2502 2502 -0.03950867618414122 AESDVVTGLPP 11 Unmodified _AESDVVTGLPP_ 0 0 0 REV__PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant REV__PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7758178710938 2 542.779679 1083.5448 -0.28507 -0.00015473 1.9066 0.0010349 1.6215 0.00088013 542.7808961897233 19.636 0.8351 18.311 17.931 18.766 -1.3251 37 23 3 0 0 0 0.65887 1 2972 2972 0.03141 0 1 726320 + 2157 16220 1132 1134 2503 2503 0.0063741165256487875 AESEAKQYR 9 Unmodified _AESEAKQYR_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST nc|ENSG00000151914|Q03001-3|DST nc|ENSG00000151914|Q03001-3|DST MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2655029296875 2 541.26727 1080.51999 0.36214 0.00019602 -3.9744 -0.0021512 -3.6123 -0.0019552 541.7679660046433 27.45 0.2745 27.45 27.216 27.49 0 10 7 2 0 0 0 0.55979 1 4830 4830 15.847 1.0089 1 835730 2158 12387 1133 1135 2504 2504 -0.017052234301445424 AESEITIAP 9 Unmodified _AESEITIAP_ 0 0 0 ENST00000462327.1_1_10:120889049-120892241:+|nuORF;ENST00000498549.2_1_10:120879899-120896577:+|nuORF;nc|ENSG00000119979|Q8TCE6-2|DENND10;nc|ENSG00000221930|Q6NSW5|DENND10P1;ENST00000592932.1_1_X:129629132-129630203:+|nuORF;ENSG00000119979|ENST00000361432|DENND10 ENST00000462327.1_1_10:120889049-120892241:+|nuORF ENST00000462327.1_1_10:120889049-120892241:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 930.47802734375 1 930.477854 929.470577 0.38748 0.00036055 -0.12475 -0.00011608 0.26274 0.00024447 930.4776868762992 89.921 0.76556 89.921 89.53 90.295 0 51 21 3 0 0 0 0.026587 3 17517 17517;17561;17606 85.357 23.999 1 13458000 2159 3112 1134 1136 2505;2506;2507 2505 0.003020685610522378 AESEITIAP 9 Unmodified _AESEITIAP_ 0 0 0 ENST00000462327.1_1_10:120889049-120892241:+|nuORF;ENST00000498549.2_1_10:120879899-120896577:+|nuORF;nc|ENSG00000119979|Q8TCE6-2|DENND10;nc|ENSG00000221930|Q6NSW5|DENND10P1;ENST00000592932.1_1_X:129629132-129630203:+|nuORF;ENSG00000119979|ENST00000361432|DENND10 ENST00000462327.1_1_10:120889049-120892241:+|nuORF ENST00000462327.1_1_10:120889049-120892241:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.4781494140625 1 930.477854 929.470577 0.15301 0.00014238 0.14985 0.00013944 0.30287 0.00028181 930.4779897905969 93.825 0.79156 89.834 89.42 90.212 -3.9907 57 22 3 0 0 0 0.026587 3 18367 18316;18367;18412 85.357 31.781 1 11281000 2160 3112 1134 1136 2508;2509;2510 2509 0.003020685610522378 AESEITIAP 9 Unmodified _AESEITIAP_ 0 0 0 ENST00000462327.1_1_10:120889049-120892241:+|nuORF;ENST00000498549.2_1_10:120879899-120896577:+|nuORF;nc|ENSG00000119979|Q8TCE6-2|DENND10;nc|ENSG00000221930|Q6NSW5|DENND10P1;ENST00000592932.1_1_X:129629132-129630203:+|nuORF;ENSG00000119979|ENST00000361432|DENND10 ENST00000462327.1_1_10:120889049-120892241:+|nuORF ENST00000462327.1_1_10:120889049-120892241:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2586669921875 2 465.742565 929.470577 0.16419 7.647E-05 -0.10739 -5.0017E-05 0.056796 2.6452E-05 465.7424232219772 94.047 0.86435 89.903 89.448 90.312 -4.1435 74 24 4 0 0 0 0.54354 1 17856 17856 16.942 1.0951 1 20583000 2161 3112 1134 1136 2511 2511 0.003020685610522378 AESEITIAP 9 Unmodified _AESEITIAP_ 0 0 0 ENST00000462327.1_1_10:120889049-120892241:+|nuORF;ENST00000498549.2_1_10:120879899-120896577:+|nuORF;nc|ENSG00000119979|Q8TCE6-2|DENND10;nc|ENSG00000221930|Q6NSW5|DENND10P1;ENST00000592932.1_1_X:129629132-129630203:+|nuORF;ENSG00000119979|ENST00000361432|DENND10 ENST00000462327.1_1_10:120889049-120892241:+|nuORF ENST00000462327.1_1_10:120889049-120892241:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 930.4782104492188 1 930.477854 929.470577 0.43665 0.0004063 -0.061632 -5.7347E-05 0.37502 0.00034895 930.4778157326626 94.051 0.82875 89.907 89.448 90.276 -4.1435 53 23 3 0 0 0 0.026587 4 17915 17862;17915;17957;18003 85.357 21.794 1 13558000 2162 3112 1134 1136 2512;2513;2514;2515 2513 0.003020685610522378 AESEITIAP 9 Unmodified _AESEITIAP_ 0 0 0 ENST00000462327.1_1_10:120889049-120892241:+|nuORF;ENST00000498549.2_1_10:120879899-120896577:+|nuORF;nc|ENSG00000119979|Q8TCE6-2|DENND10;nc|ENSG00000221930|Q6NSW5|DENND10P1;ENST00000592932.1_1_X:129629132-129630203:+|nuORF;ENSG00000119979|ENST00000361432|DENND10 ENST00000462327.1_1_10:120889049-120892241:+|nuORF ENST00000462327.1_1_10:120889049-120892241:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 930.4779663085938 1 930.477854 929.470577 0.18709 0.00017409 0.15184 0.00014128 0.33893 0.00031537 930.4779936390026 93.786 0.79495 89.942 89.535 90.33 -3.844 53 22 3 0 0 0 0.026587 3 17970 17923;17970;18023 85.357 18.013 1 12814000 2163 3112 1134 1136 2516;2517;2518 2517 0.003020685610522378 AESEYLIQQA 10 Unmodified _AESEYLIQQA_ 0 0 0 nc|ENSG00000150967|Q9NP78-7|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9 nc|ENSG00000150967|Q9NP78-7|ABCB9 nc|ENSG00000150967|Q9NP78-7|ABCB9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.320068359375 2 576.282586 1150.55062 0.4163 0.0002399 0.13444 7.7475E-05 0.55074 0.00031738 576.282416801994 91.536 0.61366 87.441 87.019 87.633 -4.0946 20 17 2 0 0 0 0.046341 1 17423 17423 44.392 39.561 1 1616400 2164 4842 1135 1137 2519 2519 -0.018634898357504426 AESEYLIQQA 10 Unmodified _AESEYLIQQA_ 0 0 0 nc|ENSG00000150967|Q9NP78-7|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9 nc|ENSG00000150967|Q9NP78-7|ABCB9 nc|ENSG00000150967|Q9NP78-7|ABCB9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3258056640625 2 576.282586 1150.55062 0.14442 8.3229E-05 0.50741 0.00029241 0.65183 0.00037564 576.2827768615695 91.196 0.48658 87.388 87.129 87.616 -3.8083 24 13 2 0 0 0 0.53552 1 17421 17421 22.736 7.898 1 1459900 2165 4842 1135 1137 2520 2520 -0.018634898357504426 AESFAQLTI 9 Unmodified _AESFAQLTI_ 0 0 0 REV__ENSG00000165895|ENST00000298815|ARHGAP42 REV__ENSG00000165895|ENST00000298815|ARHGAP42 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25762939453125 2 490.258382 978.502212 0.14743 7.2278E-05 -1.0595 -0.00051941 -0.91204 -0.00044713 490.25830794704655 19.051 1.2407 19.051 18.687 19.928 0 83 35 4 0 0 0 0.68435 1 3242 3242 7.2892 0 1 45589000 + 2166 17805 1136 1138 2521 2521 0.012100613149868877 AESFKPGAI 9 Unmodified _AESFKPGAI_ 0 0 0 REV__ENST00000272647.9_1_2:128621770-128621926:-|nuORF REV__ENST00000272647.9_1_2:128621770-128621926:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2475280761719 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 76.804 1 73.389 72.889 73.889 -3.4151 0 0 0 0.20628 1 14989 14989 21.747 1.293 1 + 2167 20280 1137 1139 2522 2522 0.01858096006139931 AESFSIWKFPP 11 Unmodified _AESFSIWKFPP_ 0 0 0 REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2272033691406 3 436.892284 1307.65502 0.29529 0.00012901 0.35205 0.00015381 0.64734 0.00028282 436.8921905934746 30.306 0.66314 28.414 27.928 28.591 -1.8928 25 18 2 0 0 0 0.79428 1 5174 5174 4.4062 0.56024 1 537580 + 2168 20039 1138 1140 2523 2523 0.01350256711612019 AESGIYIY 8 Unmodified _AESGIYIY_ 0 0 0 REV__LNPEP|p.S883Y|1|0.13|ENSG00000113441|chr5:97024607-97024607|C/A|missense_variant REV__LNPEP|p.S883Y|1|0.13|ENSG00000113441|chr5:97024607-97024607|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2284851074219 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 138.25 1 133.61 133.11 134.11 -4.6413 0 0 0 0.17294 1 27294 27294 34.187 7.8461 1 + 2169 23802 1139 1141 2524 2524 -0.02209299122102948 AESGLARPL 9 Unmodified _AESGLARPL_ 0 0 0 REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2376403808594 2 457.258717 912.50288 -0.06528 -2.985E-05 0.13341 6.1003E-05 0.06813 3.1153E-05 457.2587561982334 80.762 0.72892 76.923 76.532 77.261 -3.8392 46 20 3 0 0 0 0.55539 1 15259 15259 16.942 3.4344 1 2686000 + 2170 22721 1140 1142 2525 2525 0.04312900754700877 AESGLARPL 9 Unmodified _AESGLARPL_ 0 0 0 REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 457.258717 912.50288 0.55373 0.0002532 -0.48698 -0.00022268 0.06675 3.0522E-05 457.25848517507825 77.052 0.6627 77.052 76.694 77.357 0 0.083349 -0.00047251 NaN 16.942 38 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3389200 + 2171 22721 1140 1142 0.04312900754700877 AESGLARPL 9 Unmodified _AESGLARPL_ 0 0 0 REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.258717 912.50288 -0.074938 -3.4266E-05 0.21074 9.6363E-05 0.1358 6.2097E-05 457.25882052724916 80.473 0.74272 76.963 76.543 77.286 -3.5102 -0.0056642 0.00016557 NaN 16.942 41 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3635400 + 2172 22721 1140 1142 0.04312900754700877 AESGLARPL 9 Unmodified _AESGLARPL_ 0 0 0 REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 457.258717 912.50288 -0.06528 -2.985E-05 0.13341 6.1003E-05 0.06813 3.1153E-05 457.2587561982334 80.762 0.72892 76.923 76.532 77.261 -3.8392 -0.045949 9.4845E-05 NaN 16.942 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2686000 + 2173 22721 1140 1142 0.04312900754700877 AESGLARPL 9 Unmodified _AESGLARPL_ 0 0 0 REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 457.258717 912.50288 -0.20151 -9.214E-05 0.20862 9.5392E-05 0.0071118 3.2519E-06 457.2587860031596 80.625 0.76834 76.937 76.547 77.315 -3.6879 -0.031735 0.00016362 NaN 16.942 34 21 2 NaN NaN NaN NaN 0 NaN NaN 0 3420800 + 2174 22721 1140 1142 0.04312900754700877 AESGLEYF 8 Unmodified _AESGLEYF_ 0 0 0 REV__KCNA10|p.K435Efs*35|1|0.43|ENSG00000143105|chr1:110517485-110517486|-/C|frameshift_variant REV__KCNA10|p.K435Efs*35|1|0.43|ENSG00000143105|chr1:110517485-110517486|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.24102783203125 2 458.208358 914.402163 NaN NaN NaN NaN NaN NaN NaN 20.407 1 18.772 18.272 19.272 -1.6351 0 0 0 0.20896 1 3140 3140 18.135 2.2878 1 + 2175 16700 1141 1143 2526 2526 -0.05846176018803817 AESGLEYF 8 Unmodified _AESGLEYF_ 0 0 0 REV__KCNA10|p.K435Efs*35|1|0.43|ENSG00000143105|chr1:110517485-110517486|-/C|frameshift_variant REV__KCNA10|p.K435Efs*35|1|0.43|ENSG00000143105|chr1:110517485-110517486|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2388916015625 2 458.208358 914.402163 NaN NaN NaN NaN NaN NaN NaN 20.657 1 18.936 18.436 19.436 -1.7211 0 0 0 0.17894 1 3189 3189 32.117 1.4804 1 + 2176 16700 1141 1143 2527 2527 -0.05846176018803817 AESGRKILSA 10 Unmodified _AESGRKILSA_ 0 0 0 ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1 ENSG00000180488|ENST00000370791|MIGA1 ENSG00000180488|ENST00000370791|MIGA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.2038879394531 3 344.532979 1030.57711 0.25863 8.9105E-05 -0.10282 -3.5425E-05 0.1558 5.368E-05 344.53287648874925 28.14 0.39135 26.385 26.14 26.531 -1.7552 17 10 2 0 0 0 1.1138 1 4750 4750 14.405 7.775 1 426270 2177 6678 1142 1144 2528 2528 0.06304243846238933 AESGTDLVCVW 11 Unmodified _AESGTDLVCVW_ 0 0 0 REV__ENST00000479650.5_1_9:140449693-140459532:-|nuORF REV__ENST00000479650.5_1_9:140449693-140459532:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2686157226562 2 590.271164 1178.52777 NaN NaN NaN NaN NaN NaN NaN 48.254 1 45.304 44.804 45.804 -2.9499 0 0 0 0.23324 1 8829 8829 5.7319 0 1 + 2178 22155 1143 1145 2529 2529 -0.05434832224887032 AESGTKGLFA 10 Unmodified _AESGTKGLFA_ 0 0 0 ENST00000591006.5_1_17:42397371-42398600:-|nuORF;nc|ENSG00000013306|Q9BZJ4-2|SLC25A39;ENSG00000013306|ENST00000377095|SLC25A39 ENST00000591006.5_1_17:42397371-42398600:-|nuORF ENST00000591006.5_1_17:42397371-42398600:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26434326171875 2 490.756007 979.497461 0.28182 0.0001383 -0.075145 -3.6878E-05 0.20667 0.00010142 490.7560329887014 64.331 0.56274 60.893 60.683 61.245 -3.4376 21 15 2 0 0 0 1.1138 1 12047 12047 10.151 9.8991 1 786640 2179 1094 1144 1146 2530 2530 0.006891771722393969 AESGVRFHY 9 Unmodified _AESGVRFHY_ 0 0 0 REV__nc|ENSG00000171560|P02671|FGA REV__nc|ENSG00000171560|P02671|FGA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27587890625 2 533.259248 1064.50394 NaN NaN NaN NaN NaN NaN NaN 111.25 1 111.25 110.75 111.75 0 0 0 0 0.23508 1 21882 21882 12.532 0.89125 1 + 2180 24167 1145 1147 2531 2531 -0.025728848763719725 AESGWGLAE 9 Unmodified _AESGWGLAE_ 0 0 0 REV__ENSG00000131634|ENST00000566264|TMEM204 REV__ENSG00000131634|ENST00000566264|TMEM204 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2315979003906 2 460.211432 918.408311 0.25783 0.00011866 -0.34028 -0.0001566 -0.082453 -3.7946E-05 460.2113147668328 29.674 0.34232 29.674 29.541 29.884 0 16 9 2 0 0 0 0.42289 1 5329 5329 25.399 0 1 1152300 + 2181 16084 1146 1148 2532 2532 -0.054156577872845446 AESHIEIY 8 Unmodified _AESHIEIY_ 0 0 0 ENSG00000171246|ENST00000306773|NPTX1 ENSG00000171246|ENST00000306773|NPTX1 ENSG00000171246|ENST00000306773|NPTX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2370300292969 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 25.462 1 23.609 23.109 24.109 -1.8534 0 0 0 0.21452 1 4184 4184 13.508 1.8676 1 2182 6132 1147 1149 2533 2533 -0.026547982361535105 AESHPLDDPL 10 Unmodified _AESHPLDDPL_ 0 0 0 REV__ENSG00000155868|ENST00000286317|MED7 REV__ENSG00000155868|ENST00000286317|MED7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7745361328125 2 547.261653 1092.50875 -0.13481 -7.3777E-05 0.48535 0.00026562 0.35054 0.00019184 547.2619175041351 24.847 0.8925 22.994 22.435 23.328 -1.8534 54 25 4 0 0 0 0.67319 1 3978 3978 13.906 0.86358 1 6368000 + 2183 17230 1148 1150 2534 2534 -0.03380045524295383 AESIIHSY 8 Unmodified _AESIIHSY_ 0 0 0 ENST00000466689.1_1_3:58520061-58520262:-|nuORF ENST00000466689.1_1_3:58520061-58520262:-|nuORF ENST00000466689.1_1_3:58520061-58520262:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2303771972656 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 52.936 1 49.841 49.341 50.341 -3.0954 0 0 0 0.20568 1 9781 9781 20.871 0 1 2184 10136 1149 1151 2535 2535 -0.017787808905723068 AESKEISNVSS 11 Unmodified _AESKEISNVSS_ 0 0 0 RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant;RLF|p.Y1419Ifs*6|1|0.31|ENSG00000117000|chr1:40238952-40238952|T/-|frameshift_variant;RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant;RLF|p.N1741Ifs*21|1|0.18|ENSG00000117000|chr1:40239919-40239919|A/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF;RLF|p.L337Wfs*10|1|0.4|ENSG00000117000|chr1:40231574-40231574|T/-|frameshift_variant;RLF|p.H728Tfs*20|1|0.42|ENSG00000117000|chr1:40236880-40236880|T/-|frameshift_variant RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3358154296875 2 575.78295 1149.55135 0.37685 0.00021699 0.35244 0.00020293 0.7293 0.00041992 575.7829481845648 20.934 0.39188 19.46 19.24 19.632 -1.4742 21 10 3 0 0 0 0.59457 1 3498 3498 18.373 6.8784 1 1175800 2185 2968 1150 1152 2536 2536 -0.017446951866986637 AESKEISNVSS 11 Unmodified _AESKEISNVSS_ 0 0 0 RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant;RLF|p.Y1419Ifs*6|1|0.31|ENSG00000117000|chr1:40238952-40238952|T/-|frameshift_variant;RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant;RLF|p.N1741Ifs*21|1|0.18|ENSG00000117000|chr1:40239919-40239919|A/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF;RLF|p.L337Wfs*10|1|0.4|ENSG00000117000|chr1:40231574-40231574|T/-|frameshift_variant;RLF|p.H728Tfs*20|1|0.42|ENSG00000117000|chr1:40236880-40236880|T/-|frameshift_variant RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3173828125 2 575.78295 1149.55135 -0.12453 -7.1703E-05 0.61237 0.00035259 0.48784 0.00028089 575.7832244351191 20.851 0.34237 19.466 19.271 19.614 -1.3847 19 9 3 0 0 0 0.096242 1 3254 3254 71.708 22.154 1 1213600 2186 2968 1150 1152 2537 2537 -0.017446951866986637 AESKEISNVSS 11 Unmodified _AESKEISNVSS_ 0 0 0 RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant;RLF|p.Y1419Ifs*6|1|0.31|ENSG00000117000|chr1:40238952-40238952|T/-|frameshift_variant;RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant;RLF|p.N1741Ifs*21|1|0.18|ENSG00000117000|chr1:40239919-40239919|A/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF;RLF|p.L337Wfs*10|1|0.4|ENSG00000117000|chr1:40231574-40231574|T/-|frameshift_variant;RLF|p.H728Tfs*20|1|0.42|ENSG00000117000|chr1:40236880-40236880|T/-|frameshift_variant RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3209838867188 2 575.78295 1149.55135 -0.75279 -0.00043344 1.226 0.0007059 0.47319 0.00027246 575.7836313355072 21.15 0.2454 19.429 19.287 19.532 -1.7211 15 6 3 0 0 0 0.48275 1 3278 3278 36.506 5.2379 1 921030 2187 2968 1150 1152 2538 2538 -0.017446951866986637 AESKEISNVSS 11 Unmodified _AESKEISNVSS_ 0 0 0 RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant;RLF|p.Y1419Ifs*6|1|0.31|ENSG00000117000|chr1:40238952-40238952|T/-|frameshift_variant;RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant;RLF|p.N1741Ifs*21|1|0.18|ENSG00000117000|chr1:40239919-40239919|A/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF;RLF|p.L337Wfs*10|1|0.4|ENSG00000117000|chr1:40231574-40231574|T/-|frameshift_variant;RLF|p.H728Tfs*20|1|0.42|ENSG00000117000|chr1:40236880-40236880|T/-|frameshift_variant RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.78295 1149.55135 0.25765 0.00014835 0.24072 0.0001386 0.49837 0.00028695 575.7830071930166 19.555 0.3452 19.555 19.38 19.725 0 0.077834 -0.00035831 NaN 71.708 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1619000 2188 2968 1150 1152 -0.017446951866986637 AESKFRVLE 9 Unmodified _AESKFRVLE_ 0 0 0 nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C;ENST00000488721.5_1_2:96519417-96521901:-|nuORF;nc|ENSG00000174501|Q5JPF3-2|ANKRD36C nc|ENSG00000174501|Q5JPF3|ANKRD36C nc|ENSG00000174501|Q5JPF3|ANKRD36C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 114.13 1 109.82 109.32 110.32 -4.3136 0 0 0 0.23508 1 21984 21984 4.897 0 1 2189 6353 1151 1153 2539 2539 0.0461712798901317 AESKTKNAA 9 Unmodified _AESKTKNAA_ 0 0 0 nc|ENSG00000182095|O15417-2|TNRC18;TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2457580566406 2 460.245806 918.47706 0.48326 0.00022242 -0.076151 -3.5048E-05 0.40711 0.00018737 460.24575791322366 31.668 0.49123 29.52 29.231 29.722 -2.1483 22 13 2 0 0 0 0.65387 1 5424 5424 9.3831 0 1 572320 2190 12500 1152 1154 2540 2540 0.01456006512410113 AESLELDP 8 Unmodified _AESLELDP_ 0 0 0 REV__nc|ENSG00000155324|Q96HH9-3|GRAMD2B REV__nc|ENSG00000155324|Q96HH9-3|GRAMD2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21478271484375 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 85.621 1 81.67 81.17 82.17 -3.9503 0 0 0 0.21452 1 16288 16288 13.508 4.1604 1 + 2191 24108 1153 1155 2541 2541 -0.028581933643749835 AESLNAIGV 9 Unmodified _AESLNAIGV_ 0 0 0 ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2362976074219 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 101.61 1 101.61 101.11 102.11 0 0 0 0 0.23508 1 19949 19949 9.3831 0.78985 1 2192 1462 1154 1156 2542 2542 0.019015056264720442 AESLQPVAA 9 Unmodified _AESLQPVAA_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 885.4205932617188 1 885.467623 884.460347 0.32265 0.0002857 0.067558 5.982E-05 0.39021 0.00034552 885.4676003827526 60.295 0.84266 56.981 56.588 57.431 -3.3139 59 23 4 0 0 0 1.9592E-24 1 11185 11185 181.33 77.579 1 21808000 2193 1180 1155 1157 2543 2543 0.013495056264673622 AESLQPVAA 9 Unmodified _AESLQPVAA_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 885.467623 884.460347 0.30392 0.00026911 0.14221 0.00012592 0.44612 0.00039503 885.4676581259364 56.93 0.83981 56.93 56.536 57.376 0 -0.038255 3.5039E-05 NaN 181.33 63 23 4 NaN NaN NaN NaN 0 NaN NaN 0 20764000 2194 1180 1155 1157 0.013495056264673622 AESLQPVAA 9 Unmodified _AESLQPVAA_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 885.467623 884.460347 0.24204 0.00021432 0.19387 0.00017167 0.43591 0.00038598 885.4677534985874 59.885 0.76661 56.952 56.608 57.375 -2.9333 -0.016937 8.0786E-05 NaN 181.33 56 21 3 NaN NaN NaN NaN 0 NaN NaN 0 27081000 2195 1180 1155 1157 0.013495056264673622 AESLQPVAA 9 Unmodified _AESLQPVAA_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 885.467623 884.460347 0.30113 0.00026664 0.061073 5.4078E-05 0.36221 0.00032072 885.4676437373706 60.235 0.85192 57.012 56.638 57.49 -3.2237 0.042924 -3.6802E-05 NaN 181.33 61 23 4 NaN NaN NaN NaN 0 NaN NaN 0 23364000 2196 1180 1155 1157 0.013495056264673622 AESLSSGVAP 10 Unmodified _AESLSSGVAP_ 0 0 0 REV__nc|ENSG00000101057|P10244-2|MYBL2 REV__nc|ENSG00000101057|P10244-2|MYBL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2351989746094 2 459.232364 916.450176 -0.043101 -1.9794E-05 0.36847 0.00016921 0.32537 0.00014942 459.23249672487054 54.079 1.7489 50.941 50.467 52.216 -3.1377 121 49 4 0 0 0 0.29353 1 9987 9987 37.974 0 1 143760000 + 2197 14759 1156 1158 2544 2544 -0.011391020987616685 AESLVDQSA 9 Unmodified _AESLVDQSA_ 0 0 0 ENST00000506320.1_1_1:115321857-115323228:-|nuORF;ENST00000474562.1_1_1:115321817-115323228:-|nuORF;ENST00000475335.5_1_1:115321747-115323228:-|nuORF;ENSG00000052723|ENST00000060969|SIKE1;nc|ENSG00000052723|Q9BRV8-2|SIKE1 ENST00000506320.1_1_1:115321857-115323228:-|nuORF ENST00000506320.1_1_1:115321857-115323228:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2359924316406 2 460.221997 918.429441 0.40951 0.00018847 -0.47667 -0.00021937 -0.067152 -3.0905E-05 460.2218921627886 41.378 0.66356 41.378 40.954 41.618 0 28 18 2 0 0 0 0.28819 1 7682 7682 32.305 10.559 1 729050 2198 1251 1157 1159 2545 2545 -0.03303692478436915 AESLVDQSA 9 Unmodified _AESLVDQSA_ 0 0 0 ENST00000506320.1_1_1:115321857-115323228:-|nuORF;ENST00000474562.1_1_1:115321817-115323228:-|nuORF;ENST00000475335.5_1_1:115321747-115323228:-|nuORF;ENSG00000052723|ENST00000060969|SIKE1;nc|ENSG00000052723|Q9BRV8-2|SIKE1 ENST00000506320.1_1_1:115321857-115323228:-|nuORF ENST00000506320.1_1_1:115321857-115323228:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2304382324219 2 460.221997 918.429441 -0.15163 -6.9783E-05 0.1416 6.5169E-05 -0.010027 -4.6146E-06 460.22201265040667 43.965 0.79808 41.175 40.771 41.569 -2.79 35 22 2 0 0 0 0.38188 1 8198 8198 26.884 7.4447 1 830280 2199 1251 1157 1159 2546 2546 -0.03303692478436915 AESLVDQSA 9 Unmodified _AESLVDQSA_ 0 0 0 ENST00000506320.1_1_1:115321857-115323228:-|nuORF;ENST00000474562.1_1_1:115321817-115323228:-|nuORF;ENST00000475335.5_1_1:115321747-115323228:-|nuORF;ENSG00000052723|ENST00000060969|SIKE1;nc|ENSG00000052723|Q9BRV8-2|SIKE1 ENST00000506320.1_1_1:115321857-115323228:-|nuORF ENST00000506320.1_1_1:115321857-115323228:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.239990234375 2 460.221997 918.429441 -0.068308 -3.1437E-05 -0.93077 -0.00042836 -0.99908 -0.0004598 460.2220698542409 43.953 0.76962 41.206 40.905 41.674 -2.7475 42 21 3 0 0 0 0.55979 1 7919 7919 15.847 1.0089 1 613200 2200 1251 1157 1159 2547 2547 -0.03303692478436915 AESLVDQSA 9 Unmodified _AESLVDQSA_ 0 0 0 ENST00000506320.1_1_1:115321857-115323228:-|nuORF;ENST00000474562.1_1_1:115321817-115323228:-|nuORF;ENST00000475335.5_1_1:115321747-115323228:-|nuORF;ENSG00000052723|ENST00000060969|SIKE1;nc|ENSG00000052723|Q9BRV8-2|SIKE1 ENST00000506320.1_1_1:115321857-115323228:-|nuORF ENST00000506320.1_1_1:115321857-115323228:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.221997 918.429441 -0.084499 -3.8888E-05 -1.1045 -0.00050832 -1.189 -0.00054721 460.2219572575374 44.123 0.30949 41.357 41.185 41.495 -2.7661 0.07801 -0.00073879 NaN 32.305 16 8 3 NaN NaN NaN NaN 0 NaN NaN 0 518240 2201 1251 1157 1159 -0.03303692478436915 AESMATHHLP 10 Unmodified _AESMATHHLP_ 0 0 0 nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP nc|ENSG00000151332|Q9NS73-5|MBIP nc|ENSG00000151332|Q9NS73-5|MBIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7733764648438 2 547.258391 1092.50223 0.39432 0.00021579 0.63774 0.00034901 1.0321 0.0005648 547.2591483163895 37.222 1.2262 37.222 36.561 37.787 0 66 34 3 0 0 0 0.10004 1 6822 6822 60.074 29.437 1 5036800 2202 4860 1158 1160 2548 2548 -0.04032261956649563 AESMATHHLP 10 Unmodified _AESMATHHLP_ 0 0 0 nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP nc|ENSG00000151332|Q9NS73-5|MBIP nc|ENSG00000151332|Q9NS73-5|MBIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7928466796875 2 547.258391 1092.50223 -0.072852 -3.9869E-05 0.92998 0.00050894 0.85713 0.00046907 547.2592217338038 39.861 0.98569 37.312 36.719 37.704 -2.5491 59 27 3 0 0 0 0.0023783 1 7395 7395 111.29 71.33 1 4547800 2203 4860 1158 1160 2549 2549 -0.04032261956649563 AESMATHHLP 10 Unmodified _AESMATHHLP_ 0 0 0 nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP nc|ENSG00000151332|Q9NS73-5|MBIP nc|ENSG00000151332|Q9NS73-5|MBIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7738647460938 2 547.258391 1092.50223 0.038131 2.0868E-05 0.70389 0.00038521 0.74202 0.00040607 547.2589920001799 39.757 1.1551 37.218 36.484 37.64 -2.5398 82 32 3 0 0 0 0.055351 1 7150 7150 99.799 51.453 1 5079200 2204 4860 1158 1160 2550 2550 -0.04032261956649563 AESMATHHLP 10 Unmodified _AESMATHHLP_ 0 0 0 nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP nc|ENSG00000151332|Q9NS73-5|MBIP nc|ENSG00000151332|Q9NS73-5|MBIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7738647460938 2 547.258391 1092.50223 0.20992 0.00011488 0.13044 7.1387E-05 0.34036 0.00018627 547.2589215091332 39.712 1.1182 37.307 36.51 37.628 -2.4049 81 31 3 0 0 0 0.087069 1 7014 7014 65.235 27.261 1 2917200 2205 4860 1158 1160 2551 2551 -0.04032261956649563 AESNVSNVVPA 11 Unmodified _AESNVSNVVPA_ 0 0 0 REV__ENST00000313766.5_7:299959-300103:+|nuORF REV__ENST00000313766.5_7:299959-300103:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77490234375 2 543.774928 1085.5353 0.23921 0.00013008 -0.093552 -5.0871E-05 0.14566 7.9207E-05 543.7748367300559 15.62 0.37633 15.62 15.438 15.814 0 28 10 4 0 0 0 0.71397 1 2429 2429 10.8 1.2555 1 2890100 + 2206 20506 1159 1161 2552 2552 -0.004043566329301029 AESNYKHL 8 Unmodified _AESNYKHL_ 0 0 0 ENSG00000137494|ENST00000533342|ANKRD42 ENSG00000137494|ENST00000533342|ANKRD42 ENSG00000137494|ENST00000533342|ANKRD42 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2405700683594 2 481.240524 960.466495 -0.15355 -7.3897E-05 0.60354 0.00029045 0.44998 0.00021655 481.2406913752018 47.604 0.30862 44.654 44.399 44.708 -2.9499 11 8 2 0 0 0 0.52597 1 8678 8678 26.884 0 1 583710 2207 4088 1160 1162 2553 2553 -0.015319761420073519 AESPAAAVIT 10 Unmodified _AESPAAAVIT_ 0 0 0 REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2400817871094 2 465.250557 928.486562 0.41222 0.00019178 0.38683 0.00017997 0.79904 0.00037176 465.2505814186107 33.379 0.51292 31.163 30.84 31.353 -2.2158 22 14 2 0 0 0 0.81109 1 5796 5796 24.021 8.1734 1 735090 + 2208 20495 1161 1163 2554 2554 0.019457747979345186 AESPALVTP 9 Unmodified _AESPALVTP_ 0 0 0 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 885.4208374023438 1 884.472374 883.465098 0.26752 0.00023662 0.30259 0.00026764 0.57012 0.00050425 884.4724351604826 82.335 0.79855 78.77 78.371 79.169 -3.5656 42 22 2 0 0 0 0.19311 1 16097 16097 37.974 7.3375 1 3233100 2209 7507 1162 1164 2555 2555 0.01870389769248959 AESPALVTP 9 Unmodified _AESPALVTP_ 0 0 0 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 884.472374 883.465098 0.91797 0.00081192 -0.40577 -0.00035889 0.5122 0.00045303 884.4719393402671 78.697 1.0086 78.697 78.157 79.166 0 -0.11463 -0.00049073 NaN 37.974 41 28 2 NaN NaN NaN NaN 0 NaN NaN 0 2664700 2210 7507 1162 1164 0.01870389769248959 AESPALVTP 9 Unmodified _AESPALVTP_ 0 0 0 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 884.472374 883.465098 0.31933 0.00028243 0.3653 0.0003231 0.68462 0.00060553 884.4726626128108 82.727 0.86114 78.854 78.433 79.294 -3.8736 0.041885 0.00019126 NaN 37.974 42 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2498500 2211 7507 1162 1164 0.01870389769248959 AESPALVTP 9 Unmodified _AESPALVTP_ 0 0 0 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 884.472374 883.465098 0.03211 2.84E-05 0.22545 0.00019941 0.25756 0.00022781 884.472506042022 82.626 0.86816 78.927 78.416 79.284 -3.6985 0.11515 6.757E-05 NaN 37.974 40 24 2 NaN NaN NaN NaN 0 NaN NaN 0 3327700 2212 7507 1162 1164 0.01870389769248959 AESPGRPPP 9 Unmodified _AESPGRPPP_ 0 0 0 nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant nc|ENSG00000111077|Q63HR2-5|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7476501464844 2 454.235242 906.45593 -0.20186 -9.169E-05 0.238 0.00010811 0.03614 1.6416E-05 454.23532934394814 18 2.2634 16.689 15.995 18.258 -1.3109 125 64 3 0 0 0 0.73268 1 2980 2980 18.146 5.6148 1 2373600 2213 2604 1163 1165 2556 2556 -0.0010395879644420347 AESPGRPPP 9 Unmodified _AESPGRPPP_ 0 0 0 nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant nc|ENSG00000111077|Q63HR2-5|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7582092285156 2 454.235242 906.45593 -0.44783 -0.00020342 0.5054 0.00022957 0.057567 2.6149E-05 454.23542861107177 17.975 1.9099 16.702 16.074 17.984 -1.2722 87 54 2 0 0 0 0.81703 1 2908 2908 14.838 1.3304 1 1595400 2214 2604 1163 1165 2557 2557 -0.0010395879644420347 AESPLRVLA 9 Unmodified _AESPLRVLA_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF;ENST00000576862.5_1_17:5290923-5298221:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7257080078125 2 478.282192 954.549831 0.29566 0.00014141 -0.26759 -0.00012798 0.028077 1.3429E-05 478.28191799284025 103.16 0.5452 103.16 102.76 103.31 0 21 15 2 0 0 0 0.47965 1 20251 20251 27.223 4.487 1 1137300 2215 2483 1164 1166 2558 2558 0.0707376030584328 AESPLRVLA 9 Unmodified _AESPLRVLA_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF;ENST00000576862.5_1_17:5290923-5298221:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7401428222656 2 478.282192 954.549831 -0.025871 -1.2374E-05 -0.22943 -0.00010973 -0.2553 -0.00012211 478.28201133673326 106.93 0.79234 102.52 102.27 103.06 -4.4121 33 22 2 0 0 0 0.77644 1 20490 20490 20.415 6.5085 1 1056500 2216 2483 1164 1166 2559 2559 0.0707376030584328 AESPLRVLA 9 Unmodified _AESPLRVLA_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF;ENST00000576862.5_1_17:5290923-5298221:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7312316894531 2 478.282192 954.549831 0.7236 0.00034608 -0.72165 -0.00034515 0.0019488 9.3208E-07 478.2818075701366 106.73 0.69223 102.64 102.36 103.05 -4.0913 26 19 2 0 0 0 0.35556 1 20525 20525 12.241 2.0901 1 921290 2217 2483 1164 1166 2560 2560 0.0707376030584328 AESPRWVL 8 Unmodified _AESPRWVL_ 0 0 0 REV__ENST00000366759.8_2_1:227923088-227935550:+|nuORF REV__ENST00000366759.8_2_1:227923088-227935550:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72357177734375 2 479.261259 956.507966 -0.35896 -0.00017203 0.73271 0.00035116 0.37376 0.00017913 479.2611682012984 37.415 1.313 34.946 34.398 35.711 -2.4688 50 37 2 0 0 0 0.96284 1 6859 6859 13.508 5.5977 1 548460 + 2218 20903 1165 1167 2561 2561 0.027972046173204035 AESPRWVL 8 Unmodified _AESPRWVL_ 0 0 0 REV__ENST00000366759.8_2_1:227923088-227935550:+|nuORF REV__ENST00000366759.8_2_1:227923088-227935550:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73284912109375 2 479.261259 956.507966 0.085675 4.1061E-05 -0.30223 -0.00014485 -0.21656 -0.00010379 479.26070740248883 37.662 0.99641 35.314 34.655 35.651 -2.3479 39 28 2 0 0 0 0.96284 1 6559 6559 19.439 19.439 1 629080 + 2219 20903 1165 1167 2562 2562 0.027972046173204035 AESPSLCLS 9 Unmodified _AESPSLCLS_ 0 0 0 REV__ENSG00000153107|ENST00000341068|ANAPC1 REV__ENSG00000153107|ENST00000341068|ANAPC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7589111328125 2 453.715493 905.416433 NaN NaN NaN NaN NaN NaN NaN 59.721 1 56.788 56.288 57.288 -2.9333 0 0 0 0.22621 1 11486 11486 15.847 1.2655 1 + 2220 17135 1166 1168 2563 2563 -0.04005846862173712 AESPSWTP 8 Unmodified _AESPSWTP_ 0 0 0 ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2281494140625 2 437.7007 873.386848 -0.10566 -4.6247E-05 0.050827 2.2247E-05 -0.054831 -2.4E-05 437.70063929796936 79.022 0.95485 75.512 74.918 75.873 -3.5102 58 26 3 0 0 0 0.26367 1 15413 15413 53.576 23.351 1 4998100 2221 1684 1167 1169 2564 2564 -0.054910428159928415 AESPVLVVT 9 Unmodified _AESPVLVVT_ 0 0 0 nc|ENSG00000215421|Q9C0G0-2|ZNF407;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-2|ZNF407 nc|ENSG00000215421|Q9C0G0-2|ZNF407 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2381896972656 2 457.7633 913.512048 -0.60166 -0.00027542 0.72318 0.00033105 0.12153 5.563E-05 457.7635870960224 108.13 0.5549 103.81 103.52 104.07 -4.32 25 15 2 0 0 0 0.19271 1 21279 21279 54.774 22.468 1 1425100 2222 7747 1168 1170 2565 2565 0.05183249320384675 AESPYGHPA 9 Unmodified _AESPYGHPA_ 0 0 0 ENSG00000141542|ENST00000571995|RAB40B;ENST00000269347.10_1_17:80654676-80656523:-|nuORF;ENST00000572603.1_1_17:80619136-80656523:-|nuORF ENSG00000141542|ENST00000571995|RAB40B ENSG00000141542|ENST00000571995|RAB40B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.253173828125 2 464.711599 927.408646 0.12939 6.0129E-05 -0.57542 -0.0002674 -0.44603 -0.00020728 464.71145353408355 21.133 0.44509 21.133 20.885 21.33 0 19 12 2 0 0 0 0.44262 2 3495 3488;3495 23.148 7.3012 1 564210 2223 4381 1169 1171 2566;2567 2567 -0.057962380674325686 AESPYGHPA 9 Unmodified _AESPYGHPA_ 0 0 0 ENSG00000141542|ENST00000571995|RAB40B;ENST00000269347.10_1_17:80654676-80656523:-|nuORF;ENST00000572603.1_1_17:80619136-80656523:-|nuORF ENSG00000141542|ENST00000571995|RAB40B ENSG00000141542|ENST00000571995|RAB40B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2381286621094 2 464.711599 927.408646 0.61254 0.00028465 -0.56881 -0.00026433 0.043731 2.0322E-05 464.71124533285416 22.645 0.37777 21.091 20.892 21.269 -1.5532 16 10 2 0 0 0 0.79204 1 3913 3913 11.64 0 1 594460 2224 4381 1169 1171 2568 2568 -0.057962380674325686 AESPYGHPA 9 Unmodified _AESPYGHPA_ 0 0 0 ENSG00000141542|ENST00000571995|RAB40B;ENST00000269347.10_1_17:80654676-80656523:-|nuORF;ENST00000572603.1_1_17:80619136-80656523:-|nuORF ENSG00000141542|ENST00000571995|RAB40B ENSG00000141542|ENST00000571995|RAB40B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2462158203125 2 464.711599 927.408646 -0.14915 -6.9312E-05 0.39234 0.00018233 0.24319 0.00011301 464.71165029859736 22.543 0.34937 21.09 20.91 21.26 -1.4535 17 9 2 0 0 0 0.32428 1 3576 3576 30.225 8.4782 1 578090 2225 4381 1169 1171 2569 2569 -0.057962380674325686 AESPYGHPA 9 Unmodified _AESPYGHPA_ 0 0 0 ENSG00000141542|ENST00000571995|RAB40B;ENST00000269347.10_1_17:80654676-80656523:-|nuORF;ENST00000572603.1_1_17:80619136-80656523:-|nuORF ENSG00000141542|ENST00000571995|RAB40B ENSG00000141542|ENST00000571995|RAB40B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2591247558594 2 464.711599 927.408646 -0.50928 -0.00023667 0.82889 0.0003852 0.31961 0.00014853 464.71182617483237 22.844 0.27168 21.056 20.885 21.156 -1.7886 14 7 2 0 0 0 0.10648 2 3648 3640;3648 53.576 21.27 1 329580 2226 4381 1169 1171 2570;2571 2571 -0.057962380674325686 AESQAQELVND 11 Unmodified _AESQAQELVND_ 0 0 0 ENST00000463695.1_1_3:113758312-113775320:-|nuORF ENST00000463695.1_1_3:113758312-113775320:-|nuORF ENST00000463695.1_1_3:113758312-113775320:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2786254882812 2 602.278032 1202.54151 NaN NaN NaN NaN NaN NaN NaN 36.307 1 33.913 33.413 34.413 -2.3938 0 0 0 0.20718 1 6703 6703 17.113 2.2746 1 2227 10103 1170 1172 2572 2572 -0.05165883192103138 AESQLRYI 8 Unmodified _AESQLRYI_ 0 0 0 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.264404296875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 98.076 1 93.979 93.479 94.479 -4.0978 0 0 0 0.22934 1 19256 19256 0.063987 0 1 2228 4694 1171 1173 2573 2573 0.023328834091330464 AESQLRYI 8 Unmodified _AESQLRYI_ 0 0 0 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2652893066406 2 490.263999 978.513445 0.37748 0.00018506 0.58669 0.00028763 0.96416 0.00047269 490.264405409272 102.73 0.90856 98.413 98.045 98.954 -4.3208 30 25 2 0 0 0 0.68128 1 19687 19687 16.942 0 1 1115300 2229 4694 1171 1173 2574 2574 0.023328834091330464 AESQLRYI 8 Unmodified _AESQLRYI_ 0 0 0 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2554931640625 2 490.263999 978.513445 0.27829 0.00013644 0.5434 0.00026641 0.8217 0.00040285 490.2643432041311 102.48 0.57997 98.46 98.009 98.589 -4.0212 21 16 2 0 0 0 0.68128 1 19718 19718 16.942 0 1 937770 2230 4694 1171 1173 2575 2575 0.023328834091330464 AESQPIGKV 9 Unmodified _AESQPIGKV_ 0 0 0 nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;COBL|p.Q983Rfs*82|1|0.44|ENSG00000106078|chr7:51028148-51028148|T/-|frameshift_variant;COBL|p.E953Rfs*112|1|0.24|ENSG00000106078|chr7:51028239-51028239|C/-|frameshift_variant;COBL|p.K1094Nfs*20|1|0.24|ENSG00000106078|chr7:51027814-51027814|T/-|frameshift_variant;nc|ENSG00000106078|O75128-3|COBL;COBL|p.R1238Gfs*4|1|0.12|ENSG00000106078|chr7:51025165-51025165|T/-|frameshift_variant;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL nc|ENSG00000106078|O75128-6|COBL nc|ENSG00000106078|O75128-6|COBL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.240234375 2 464.758549 927.502546 0.14446 6.7141E-05 -0.006956 -3.2329E-06 0.13751 6.3908E-05 464.75858862119105 33.147 0.52355 33.147 32.85 33.373 0 19 14 2 0 0 0 0.74858 1 6048 6048 22.736 6.8891 1 1114700 2231 605 1172 1174 2576 2576 0.035894810348509054 AESQPIGKV 9 Unmodified _AESQPIGKV_ 0 0 0 nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;COBL|p.Q983Rfs*82|1|0.44|ENSG00000106078|chr7:51028148-51028148|T/-|frameshift_variant;COBL|p.E953Rfs*112|1|0.24|ENSG00000106078|chr7:51028239-51028239|C/-|frameshift_variant;COBL|p.K1094Nfs*20|1|0.24|ENSG00000106078|chr7:51027814-51027814|T/-|frameshift_variant;nc|ENSG00000106078|O75128-3|COBL;COBL|p.R1238Gfs*4|1|0.12|ENSG00000106078|chr7:51025165-51025165|T/-|frameshift_variant;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL nc|ENSG00000106078|O75128-6|COBL nc|ENSG00000106078|O75128-6|COBL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2399597167969 2 464.758549 927.502546 -0.35482 -0.00016491 0.13366 6.2119E-05 -0.22116 -0.00010279 464.7587711057563 35.385 0.6737 32.991 32.527 33.201 -2.3938 25 18 2 0 0 0 0.77734 1 6548 6548 19.257 3.4098 1 1406400 2232 605 1172 1174 2577 2577 0.035894810348509054 AESQPIGKV 9 Unmodified _AESQPIGKV_ 0 0 0 nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;COBL|p.Q983Rfs*82|1|0.44|ENSG00000106078|chr7:51028148-51028148|T/-|frameshift_variant;COBL|p.E953Rfs*112|1|0.24|ENSG00000106078|chr7:51028239-51028239|C/-|frameshift_variant;COBL|p.K1094Nfs*20|1|0.24|ENSG00000106078|chr7:51027814-51027814|T/-|frameshift_variant;nc|ENSG00000106078|O75128-3|COBL;COBL|p.R1238Gfs*4|1|0.12|ENSG00000106078|chr7:51025165-51025165|T/-|frameshift_variant;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL nc|ENSG00000106078|O75128-6|COBL nc|ENSG00000106078|O75128-6|COBL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2401123046875 2 464.758549 927.502546 0.12036 5.5937E-05 0.19002 8.8312E-05 0.31037 0.00014425 464.75850205803675 35.335 0.55778 33.082 32.743 33.301 -2.2527 29 15 3 0 0 0 0.80264 1 6237 6237 17.113 13.516 1 1478800 2233 605 1172 1174 2578 2578 0.035894810348509054 AESRAVVYSN 10 Unmodified _AESRAVVYSN_ 0 0 0 TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant;ENSG00000160218|ENST00000291574|TRAPPC10 TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7890625 2 548.275095 1094.53564 -0.33169 -0.00018186 0.54794 0.00030042 0.21625 0.00011856 548.275363940361 18.71 0.56787 17.385 17.187 17.755 -1.3251 52 15 5 0 0 0 0.91149 1 2787 2787 2.9952 0 1 20273000 2234 5240 1173 1175 2579 2579 -0.00784936913078127 AESRGPWL 8 Unmodified _AESRGPWL_ 0 0 0 REV__SLC23A2|p.K612Nfs*64|1|0.25|ENSG00000089057|chr20:4857089-4857089|T/-|frameshift_variant REV__SLC23A2|p.K612Nfs*64|1|0.25|ENSG00000089057|chr20:4857089-4857089|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2383728027344 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 104.66 1 104.66 104.16 105.16 0 0 0 0 0.21486 1 20569 20569 9.3474 1.4373 1 + 2235 24629 1174 1176 2580 2580 0.00036345066178000707 AESRKSIPR 9 Unmodified _AESRKSIPR_ 0 0 0 ENST00000442528.2_1_11:45825858-45825972:+|nuORF ENST00000442528.2_1_11:45825858-45825972:+|nuORF ENST00000442528.2_1_11:45825858-45825972:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.262451171875 2 522.301447 1042.58834 NaN NaN NaN NaN NaN NaN NaN 29.083 1 27.127 26.627 27.627 -1.9561 0 0 0 0.23508 1 5223 5223 7.2892 1.0834 1 2236 9902 1175 1177 2581 2581 0.06875065940357672 AESRLCRK 8 Unmodified _AESRLCRK_ 0 0 0 REV__nc|ENSG00000036549|Q8IYH5-2|ZZZ3 REV__nc|ENSG00000036549|Q8IYH5-2|ZZZ3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7654113769531 2 481.763643 961.512734 NaN NaN NaN NaN NaN NaN NaN 61.96 1 58.721 58.221 59.221 -3.2395 0 0 0 0.17344 1 11608 11608 34.102 7.2188 1 + 2237 14032 1176 1178 2582 2582 0.03043765488439476 AESRPQIRS 9 Unmodified _AESRPQIRS_ 0 0 0 REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.280517578125 2 522.283254 1042.55196 0.76276 0.00039838 -0.68054 -0.00035543 0.082224 4.2944E-05 522.2828388060897 24.428 0.38278 22.78 22.543 22.926 -1.6482 29 10 4 0 0 0 0.19171 1 4234 4234 38.176 6.9072 1 3751000 + 2238 20560 1177 1179 2583 2583 0.032381890436681715 AESRPQIRS 9 Unmodified _AESRPQIRS_ 0 0 0 REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2816162109375 2 522.283254 1042.55196 -0.69868 -0.00036491 0.88076 0.00046001 0.18208 9.5098E-05 522.283655791204 24.325 0.34457 22.791 22.575 22.919 -1.5342 23 9 3 0 0 0 0.46882 1 3933 3933 21.537 2.175 1 4472400 + 2239 20560 1177 1179 2584 2584 0.032381890436681715 AESRPQIRS 9 Unmodified _AESRPQIRS_ 0 0 0 REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.283254 1042.55196 0.76276 0.00039838 -0.68054 -0.00035543 0.082224 4.2944E-05 522.2828388060897 24.428 0.38278 22.78 22.543 22.926 -1.6482 -0.064288 -0.00026324 NaN 38.176 29 10 4 NaN NaN NaN NaN 0 NaN NaN 0 3751000 + 2240 20560 1177 1179 0.032381890436681715 AESRQEVP 8 Unmodified _AESRQEVP_ 0 0 0 ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B ENSG00000112584|ENST00000476287|FAM120B ENSG00000112584|ENST00000476287|FAM120B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.230224609375 2 458.230156 914.445759 -0.64671 -0.00029634 0.93979 0.00043064 0.29308 0.0001343 458.2305646554005 21.937 0.51357 20.216 20.019 20.533 -1.7211 23 14 2 0 0 0 0.5707 1 3488 3488 24.021 0.23079 1 1507100 2241 2700 1178 1180 2585 2585 -0.0148856652166387 AESRTAPSP 9 Unmodified _AESRTAPSP_ 0 0 0 ENSG00000127329|ENST00000334414|PTPRB;PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB ENSG00000127329|ENST00000334414|PTPRB ENSG00000127329|ENST00000334414|PTPRB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22869873046875 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 25.279 1 23.745 23.245 24.245 -1.5342 0 0 0 0.23508 1 4147 4147 11.64 2.2929 1 2242 3471 1179 1181 2586 2586 -0.014885665216752386 AESSEKQQ 8 Unmodified _AESSEKQQ_ 0 0 0 REV__ENSG00000075702|ENST00000401500|WDR62 REV__ENSG00000075702|ENST00000401500|WDR62 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.74725341796875 2 453.711796 905.40904 NaN NaN NaN NaN NaN NaN NaN 80.273 1 76.434 75.934 76.934 -3.8392 0 0 0 0.20896 1 15232 15232 18.135 1.1927 1 + 2243 14337 1180 1182 2587 2587 -0.04744863138228084 AESSFKYES 9 Unmodified _AESSFKYES_ 0 0 0 ENSG00000147894|ENST00000380003|C9orf72 ENSG00000147894|ENST00000380003|C9orf72 ENSG00000147894|ENST00000380003|C9orf72 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6892700195312 2 524.235104 1046.45566 0.17444 9.1448E-05 -0.067638 -3.5458E-05 0.1068 5.599E-05 524.2348431276149 34.814 0.37437 34.814 34.62 34.995 0 21 10 3 0 0 0 0.78865 1 6397 6397 19.362 13.156 1 1267300 2244 4722 1181 1183 2588 2588 -0.0657142330694569 AESSRPARGL 10 Unmodified _AESSRPARGL_ 0 0 0 ENST00000261183.7_1_12:76953263-76953407:-|nuORF ENST00000261183.7_1_12:76953263-76953407:-|nuORF ENST00000261183.7_1_12:76953263-76953407:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2822265625 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 74.877 1 71.2 70.7 71.7 -3.6764 0 0 0 0.22588 1 14156 14156 10.074 0 1 2245 8291 1182 1184 2589 2589 0.032381890436681715 AESTAVHLE 9 Unmodified _AESTAVHLE_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;ENST00000490135.6_1_6:152637953-152655276:-|nuORF ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7322692871094 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 47.976 1 45.107 44.607 45.607 -2.869 0 0 0 0.19679 1 9074 9074 0.37959 0 1 2246 3655 1183 1185 2590 2590 -0.018436997244634767 AESTGKWAL 9 Unmodified _AESTGKWAL_ 0 0 0 REV__ENST00000399173.5_1_1:27949643-27950432:-|nuORF REV__ENST00000399173.5_1_1:27949643-27950432:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7855224609375 2 481.750724 961.486896 NaN NaN NaN NaN NaN NaN NaN 18.339 1 18.339 17.839 18.839 0 0 0 0 0.22962 1 2946 2946 14.838 1.3304 1 + 2247 21337 1184 1186 2591 2591 0.0046119451779986775 AESTGTVRV 9 Unmodified _AESTGTVRV_ 0 0 0 ENSG00000151779|ENST00000281513|NBAS;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.F322Lfs*3|1|0.13|ENSG00000151779|chr2:15489011-15489011|A/-|frameshift_variant ENSG00000151779|ENST00000281513|NBAS ENSG00000151779|ENST00000281513|NBAS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24609375 2 460.245806 918.47706 0.25715 0.00011835 -0.066243 -3.0488E-05 0.1909 8.7863E-05 460.2457511785916 29.773 0.37874 29.773 29.576 29.955 0 14 10 2 0 0 0 0.12612 2 5354 5310;5354 47.594 11.467 1 1231500 2248 4887 1185 1187 2592;2593 2593 0.014560065124214816 AESTGTVRV 9 Unmodified _AESTGTVRV_ 0 0 0 ENSG00000151779|ENST00000281513|NBAS;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.F322Lfs*3|1|0.13|ENSG00000151779|chr2:15489011-15489011|A/-|frameshift_variant ENSG00000151779|ENST00000281513|NBAS ENSG00000151779|ENST00000281513|NBAS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23193359375 2 460.245806 918.47706 0.19236 8.8533E-05 -1.8181 -0.0008368 -1.6258 -0.00074826 460.2458713052185 31.68 0.35179 29.449 29.234 29.586 -2.2305 18 9 3 0 0 0 0.12612 2 5724 5724;5732 47.594 18.513 1 910400 2249 4887 1185 1187 2594;2595 2594 0.014560065124214816 AESTGTVRV 9 Unmodified _AESTGTVRV_ 0 0 0 ENSG00000151779|ENST00000281513|NBAS;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.F322Lfs*3|1|0.13|ENSG00000151779|chr2:15489011-15489011|A/-|frameshift_variant ENSG00000151779|ENST00000281513|NBAS ENSG00000151779|ENST00000281513|NBAS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2466735839844 2 460.245806 918.47706 0.24038 0.00011063 -0.075864 -3.4916E-05 0.16452 7.5718E-05 460.2457381917681 31.54 0.39171 29.513 29.302 29.694 -2.0264 18 10 2 0 0 0 0.16539 1 5423 5423 41.956 7.5538 1 686330 2250 4887 1185 1187 2596 2596 0.014560065124214816 AESTGTVRV 9 Unmodified _AESTGTVRV_ 0 0 0 ENSG00000151779|ENST00000281513|NBAS;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.F322Lfs*3|1|0.13|ENSG00000151779|chr2:15489011-15489011|A/-|frameshift_variant ENSG00000151779|ENST00000281513|NBAS ENSG00000151779|ENST00000281513|NBAS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23834228515625 2 460.245806 918.47706 0.48326 0.00022242 -0.076151 -3.5048E-05 0.40711 0.00018737 460.24575791322366 31.668 0.49123 29.52 29.231 29.722 -2.1483 22 13 2 0 0 0 0.16539 2 5457 5457;5467 41.956 7.5538 1 572320 2251 4887 1185 1187 2597;2598 2597 0.014560065124214816 AESTPLNQP 9 Unmodified _AESTPLNQP_ 0 0 0 REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|360|3|anti-sense REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|360|3|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7380065917969 2 478.737814 955.461075 0.0030207 1.4461E-06 -0.64509 -0.00030883 -0.64207 -0.00030738 478.7374090536517 47.72 1.2903 44.778 44.134 45.425 -2.9421 58 36 2 0 0 0 0.49624 1 8787 8787 0.12781 0 1 1317200 + 2252 23617 1186 1188 2599 2599 -0.018436997244748454 AESVEAVQD 9 Unmodified _AESVEAVQD_ 0 0 0 nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;ENST00000515144.5_1_5:14293150-14488426:+|nuORF nc|ENSG00000038382|O75962-4|TRIO nc|ENSG00000038382|O75962-4|TRIO MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 949.438720703125 1 947.431632 946.424355 0.069073 6.5442E-05 0.080989 7.6731E-05 0.15006 0.00014217 947.4316226166188 50.955 1.436 47.903 47.434 48.87 -3.0517 85 40 3 0 0 0 0.58804 1 9340 9340 13.906 3.0821 1 4621300 2253 1182 1187 1189 2600 2600 -0.05099996341039059 AESVEAVQD 9 Unmodified _AESVEAVQD_ 0 0 0 nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;ENST00000515144.5_1_5:14293150-14488426:+|nuORF nc|ENSG00000038382|O75962-4|TRIO nc|ENSG00000038382|O75962-4|TRIO MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 947.431632 946.424355 0.85569 0.0008107 -0.74657 -0.00070732 0.10912 0.00010338 947.4308526319675 47.977 1.0895 47.977 47.577 48.667 0 0.040723 -0.00048407 NaN 13.906 64 30 3 NaN NaN NaN NaN 0 NaN NaN 0 5024900 2254 1182 1187 1189 -0.05099996341039059 AESVEAVQD 9 Unmodified _AESVEAVQD_ 0 0 0 nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;ENST00000515144.5_1_5:14293150-14488426:+|nuORF nc|ENSG00000038382|O75962-4|TRIO nc|ENSG00000038382|O75962-4|TRIO MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 947.431632 946.424355 0.27474 0.0002603 -0.08498 -8.0512E-05 0.18976 0.00017979 947.4314552267148 50.973 1.2899 47.928 47.494 48.784 -3.0453 -0.0079058 0.00014274 NaN 13.906 69 36 3 NaN NaN NaN NaN 0 NaN NaN 0 5174800 2255 1182 1187 1189 -0.05099996341039059 AESVGAKHY 9 Unmodified _AESVGAKHY_ 0 0 0 ENSG00000080371|ENST00000261263|RAB21 ENSG00000080371|ENST00000261263|RAB21 ENSG00000080371|ENST00000261263|RAB21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24383544921875 2 481.240524 960.466495 1.0728 0.00051626 -0.68871 -0.00033143 0.38405 0.00018482 481.240325930732 24.797 0.2737 23.149 22.926 23.199 -1.6482 13 7 2 0 0 0 0.40602 1 4293 4293 25.399 4.9457 1 649610 2256 1611 1188 1190 2601 2601 -0.015319761420073519 AESVGAKHY 9 Unmodified _AESVGAKHY_ 0 0 0 ENSG00000080371|ENST00000261263|RAB21 ENSG00000080371|ENST00000261263|RAB21 ENSG00000080371|ENST00000261263|RAB21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77581787109375 2 481.240524 960.466495 0.052696 2.5359E-05 0.80521 0.0003875 0.8579 0.00041286 481.2408169113099 24.601 0.31108 23.067 22.884 23.195 -1.5342 13 8 2 0 0 0 0.55979 1 3982 3982 15.847 2.3393 1 814170 2257 1611 1188 1190 2602 2602 -0.015319761420073519 AESVGKSDN 9 Unmodified _AESVGKSDN_ 0 0 0 REV__nc|ENSG00000157965|Q7RTT4|SSX8P REV__nc|ENSG00000157965|Q7RTT4|SSX8P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7473449707031 2 453.711796 905.40904 -0.073233 -3.3227E-05 -0.74714 -0.00033899 -0.82037 -0.00037221 453.7113712652382 79.304 1.1942 75.794 75.136 76.33 -3.5102 52 33 2 0 0 0 0.65155 1 15410 15410 21.747 2.4897 1 1990000 + 2258 15863 1189 1191 2603 2603 -0.047448631382394524 AESVGYLEI 9 Unmodified _AESVGYLEI_ 0 0 0 ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2688293457031 2 490.75039 979.486227 0.085072 4.1749E-05 0.052582 2.5805E-05 0.13765 6.7554E-05 490.75043184012645 146.67 0.77827 141.67 141.26 142.04 -5 24 21 2 0 0 0 0.12076 1 28399 28399 18.614 14.33 1 2313800 2259 6055 1190 1192 2604 2604 -0.004336449219067617 AESVKEEK 8 Unmodified _AESVKEEK_ 0 0 0 REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1 REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2391357421875 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 65.244 1 65.244 64.744 65.744 0 0 0 0 0.2074 1 12574 12574 19.439 0.18201 1 + 2260 24228 1191 1193 2605 2605 0.0033318441828669165 AESVKEEK 8 Unmodified _AESVKEEK_ 0 0 0 REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1 REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23944091796875 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 65.561 1 65.561 65.061 66.061 0 0 0 0 0.2074 1 12644 12644 19.439 0.18201 1 + 2261 24228 1191 1193 2606 2606 0.0033318441828669165 AESVPMSKP 9 Oxidation (M) _AESVPM(Oxidation (M))SKP_ AESVPM(1)SKP AESVPM(54)SKP 0 0 1 REV__ASXL2|p.S466Ffs*8|1|0.28|ENSG00000143970|chr2:25750159-25750160|-/A|frameshift_variant REV__ASXL2|p.S466Ffs*8|1|0.28|ENSG00000143970|chr2:25750159-25750160|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2362976074219 2 481.236593 960.458632 -0.30578 -0.00014715 -0.71753 -0.0003453 -1.0233 -0.00049245 481.2362604144012 18.984 1.3339 17.659 17.295 18.629 -1.3251 78 37 3 0 0 0 0.10573 1 2862 2862 53.833 8.1332 1 4147700 + 2262 13136 1192 1194 2607 2607 119 -0.023178714537721135 AESVVKLTA 9 Unmodified _AESVVKLTA_ 0 0 0 ENSG00000167900|ENST00000301634|TK1 ENSG00000167900|ENST00000301634|TK1 ENSG00000167900|ENST00000301634|TK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2308654785156 2 459.26875 916.522947 -0.084474 -3.8796E-05 0.32564 0.00014956 0.24117 0.00011076 459.268853466907 65.385 1.2463 65.385 64.65 65.896 0 92 35 3 0 0 0 0.094316 1 12566 12566 57.722 28.64 1 36532000 2263 5859 1193 1195 2608 2608 0.06134651694662807 AESVVKLTA 9 Unmodified _AESVVKLTA_ 0 0 0 ENSG00000167900|ENST00000301634|TK1 ENSG00000167900|ENST00000301634|TK1 ENSG00000167900|ENST00000301634|TK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.7734375 2 459.26875 916.522947 0.32703 0.0001502 -0.11937 -5.4823E-05 0.20766 9.5372E-05 459.2686264208988 68.484 1.1432 65.093 64.49 65.633 -3.3903 94 32 4 0 0 0 0.15889 1 12890 12890 22.736 7.7791 1 34279000 2264 5859 1193 1195 2609 2609 0.06134651694662807 AESVVKLTA 9 Unmodified _AESVVKLTA_ 0 0 0 ENSG00000167900|ENST00000301634|TK1 ENSG00000167900|ENST00000301634|TK1 ENSG00000167900|ENST00000301634|TK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.26875 916.522947 -0.14729 -6.7645E-05 0.4862 0.0002233 0.33892 0.00015565 459.2689203430951 68.247 0.96234 65.109 64.597 65.559 -3.1379 -0.061597 0.00031856 NaN 57.722 81 27 4 NaN NaN NaN NaN 0 NaN NaN 0 35027000 2265 5859 1193 1195 0.06134651694662807 AESVVKLTA 9 Unmodified _AESVVKLTA_ 0 0 0 ENSG00000167900|ENST00000301634|TK1 ENSG00000167900|ENST00000301634|TK1 ENSG00000167900|ENST00000301634|TK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.26875 916.522947 0.28562 0.00013117 -0.051009 -2.3427E-05 0.23461 0.00010775 459.26867696062675 68.63 1.0972 65.094 64.59 65.688 -3.5362 -0.075997 -0.00017489 NaN 57.722 76 30 4 NaN NaN NaN NaN 0 NaN NaN 0 41900000 2266 5859 1193 1195 0.06134651694662807 AESWDPQP 8 Unmodified _AESWDPQP_ 0 0 0 REV__ENSG00000170458|ENST00000302014|CD14 REV__ENSG00000170458|ENST00000302014|CD14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23809814453125 2 465.203607 928.392661 NaN NaN NaN NaN NaN NaN NaN 46.361 1 43.496 42.996 43.996 -2.8653 0 0 0 0.17344 1 8427 8427 34.102 0 1 + 2267 18163 1194 1196 2610 2610 -0.07439944304337587 AESWKEIV 8 Unmodified _AESWKEIV_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant;RYR1|p.P3303Tfs*8|1|0.36|ENSG00000196218|chr19:38517571-38517572|-/C|frameshift_variant;RYR1|p.C1268Afs*4|1|0.14|ENSG00000196218|chr19:38473407-38473407|C/-|frameshift_variant nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2442932128906 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 78.471 1 74.681 74.181 75.181 -3.7901 0 0 0 0.20895 1 14882 14882 18.146 1.0335 1 2268 7246 1195 1197 2611 2611 0.009820786605587273 AESYEAVDRY 10 Unmodified _AESYEAVDRY_ 0 0 0 REV__ENST00000469693.5_1_3:48665668-48667128:-|nuORF REV__ENST00000469693.5_1_3:48665668-48667128:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 401.5584411621094 3 401.515654 1201.52513 NaN NaN NaN NaN NaN NaN NaN 38.018 1 35.549 35.049 36.049 -2.4688 0 0 0 0.22588 1 7035 7035 6.1918 3.1196 1 + 2269 19725 1196 1198 2612 2612 -0.06756964358191908 AESYHQHFAA 10 Unmodified _AESYHQHFAA_ 0 0 0 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7214050292969 3 387.508834 1159.50467 -0.060985 -2.3632E-05 0.5414 0.0002098 0.48042 0.00018617 387.5090072402069 29.524 0.48714 29.524 29.229 29.716 0 41 13 4 0 0 0 0.43909 1 5277 5277 28.181 15.954 1 9588400 2270 6969 1197 1199 2613 2613 -0.06870090227334913 AESYHQHFAA 10 Unmodified _AESYHQHFAA_ 0 0 0 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 387.508834 1159.50467 0.044217 1.7134E-05 0.47929 0.00018573 0.52351 0.00020286 387.50897643174784 31.797 0.56577 29.566 29.268 29.833 -2.2305 0.0052499 -6.7332E-05 NaN 28.181 48 15 4 NaN NaN NaN NaN 0 NaN NaN 0 10071000 2271 6969 1197 1199 -0.06870090227334913 AESYHQHFAA 10 Unmodified _AESYHQHFAA_ 0 0 0 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 387.508834 1159.50467 0.28107 0.00010892 0.31209 0.00012094 0.59316 0.00022985 387.5089253725831 31.609 0.53116 29.583 29.267 29.798 -2.0264 0.021631 -0.00026171 NaN 28.181 46 14 4 NaN NaN NaN NaN 0 NaN NaN 0 9236500 2272 6969 1197 1199 -0.06870090227334913 AESYHQHFAA 10 Unmodified _AESYHQHFAA_ 0 0 0 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 387.508834 1159.50467 -0.15771 -6.1114E-05 0.83398 0.00032317 0.67627 0.00026206 387.5091492566475 31.72 0.63482 29.572 29.265 29.9 -2.1483 0.010716 0.000345 NaN 28.181 52 17 4 NaN NaN NaN NaN 0 NaN NaN 0 8232200 2273 6969 1197 1199 -0.06870090227334913 AETAATLTT 9 Unmodified _AETAATLTT_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 879.4495849609375 1 878.446553 877.439277 0.60673 0.00053298 -0.16615 -0.00014595 0.44058 0.00038702 878.4463063972594 38.192 0.67557 38.192 37.927 38.603 0 29 18 2 0 0 0 0.095051 1 7060 7060 57.471 30.588 1 2733200 2274 5802 1198 1200 2614 2614 -0.004345044730598602 AETAATLTT 9 Unmodified _AETAATLTT_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 878.446553 877.439277 0.057599 5.0598E-05 0.51414 0.00045164 0.57174 0.00050224 878.4469700422094 40.587 0.78252 37.952 37.581 38.363 -2.6348 -0.090546 0.00021932 NaN 57.471 29 21 2 NaN NaN NaN NaN 0 NaN NaN 0 3760300 2275 5802 1198 1200 -0.004345044730598602 AETAATLTT 9 Unmodified _AETAATLTT_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 878.446553 877.439277 0.21583 0.00018959 0.35066 0.00030804 0.56649 0.00049763 878.4466051695466 40.556 0.56802 38.016 37.815 38.383 -2.5398 -0.02605 7.5716E-05 NaN 57.471 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3741200 2276 5802 1198 1200 -0.004345044730598602 AETAATLTT 9 Unmodified _AETAATLTT_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 878.446553 877.439277 0.24235 0.00021289 0.41081 0.00036088 0.65316 0.00057377 878.4469152310094 40.499 0.70135 38.009 37.795 38.496 -2.4896 -0.033067 0.00012856 NaN 57.471 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2314900 2277 5802 1198 1200 -0.004345044730598602 AETAAVTVAA 10 Unmodified _AETAAVTVAA_ 0 0 0 ENST00000607016.1_1_6:34360304-34360421:-|nuORF ENST00000607016.1_1_6:34360304-34360421:-|nuORF ENST00000607016.1_1_6:34360304-34360421:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 905.4373779296875 1 903.478188 902.470912 0.1061 9.5857E-05 0.025382 2.2932E-05 0.13148 0.00011879 903.4781144840207 54.075 0.77071 50.937 50.467 51.238 -3.1377 59 21 4 0 0 0 0.29353 1 10003 10003 37.974 1.847 1 44333000 2278 11751 1199 1201 2615 2615 0.015774882809068913 AETAAVTVAA 10 Unmodified _AETAAVTVAA_ 0 0 0 ENST00000607016.1_1_6:34360304-34360421:-|nuORF ENST00000607016.1_1_6:34360304-34360421:-|nuORF ENST00000607016.1_1_6:34360304-34360421:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 903.478188 902.470912 0.66666 0.00060231 -0.37027 -0.00033453 0.29639 0.00026779 903.4778091836655 50.988 0.69939 50.988 50.604 51.304 0 0.072599 -0.0002841 NaN 37.974 59 19 4 NaN NaN NaN NaN 0 NaN NaN 0 28177000 2279 11751 1199 1201 0.015774882809068913 AETAAVTVAA 10 Unmodified _AETAAVTVAA_ 0 0 0 ENST00000607016.1_1_6:34360304-34360421:-|nuORF ENST00000607016.1_1_6:34360304-34360421:-|nuORF ENST00000607016.1_1_6:34360304-34360421:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 903.478188 902.470912 -0.0053484 -4.8322E-06 0.25261 0.00022822 0.24726 0.00022339 903.4783401559611 53.666 0.72982 50.782 50.42 51.15 -2.8837 -0.13293 0.00027865 NaN 37.974 60 20 4 NaN NaN NaN NaN 0 NaN NaN 0 27108000 2280 11751 1199 1201 0.015774882809068913 AETAAVTVAA 10 Unmodified _AETAAVTVAA_ 0 0 0 ENST00000607016.1_1_6:34360304-34360421:-|nuORF ENST00000607016.1_1_6:34360304-34360421:-|nuORF ENST00000607016.1_1_6:34360304-34360421:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 903.478188 902.470912 0.29033 0.0002623 -0.10735 -9.6987E-05 0.18298 0.00016532 903.4779885489215 54.089 0.76125 50.954 50.453 51.215 -3.1352 0.038639 -4.656E-05 NaN 37.974 55 21 4 NaN NaN NaN NaN 0 NaN NaN 0 32502000 2281 11751 1199 1201 0.015774882809068913 AETAETRSP 9 Unmodified _AETAETRSP_ 0 0 0 ENST00000497470.1_1_1:155231875-155232025:-|nuORF;ENST00000480219.1_1_1:155231512-155232061:-|nuORF ENST00000497470.1_1_1:155231875-155232025:-|nuORF ENST00000497470.1_1_1:155231875-155232025:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2323303222656 2 481.232896 960.451239 0.089284 4.2967E-05 -0.10273 -4.9435E-05 -0.013442 -6.4687E-06 481.2330550048895 38.186 0.95617 35.744 35.38 36.336 -2.4419 37 26 2 0 0 0 0.48644 1 6746 6746 20.454 0 1 1487200 2282 10353 1200 1202 2616 2616 -0.030568877298605912 AETATTSY 8 Unmodified _AETATTSY_ 0 0 0 ENST00000343898.9_1_11:71713762-71716703:+|nuORF ENST00000343898.9_1_11:71713762-71716703:+|nuORF ENST00000343898.9_1_11:71713762-71716703:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 422.5234680175781 2 422.190165 842.365778 NaN NaN NaN NaN NaN NaN NaN 36.336 1 34.06 33.56 34.56 -2.2766 0 0 0 0.21486 1 6410 6410 5.7604 2.8712 1 2283 8881 1201 1203 2617 2617 -0.061710529155220684 AETAVADVPVD 11 Unmodified _AETAVADVPVD_ 0 0 0 REV__nc|ENSG00000118197|Q5T1V6-2|DDX59 REV__nc|ENSG00000118197|Q5T1V6-2|DDX59 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79296875 2 543.769311 1085.52407 NaN NaN NaN NaN NaN NaN NaN 53.824 1 50.728 50.228 51.228 -3.0954 0 0 0 0.10942 1 9947 9947 34.402 6.7729 1 + 2284 15543 1202 1204 2618 2618 -0.015271787270876303 AETDAFREQL 10 Unmodified _AETDAFREQL_ 0 0 0 REV__ENST00000392054.7_1_2:230127567-230135921:-|nuORF REV__ENST00000392054.7_1_2:230127567-230135921:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2750244140625 2 590.28566 1178.55677 NaN NaN NaN NaN NaN NaN NaN 93.303 1 93.303 92.803 93.803 0 0 0 0 0.22588 1 18255 18255 10.824 1.4408 1 + 2285 21211 1203 1205 2619 2619 -0.025369716042405344 AETEARTLA 9 Unmodified _AETEARTLA_ 0 0 0 nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENSG00000163507|ENST00000295746|CIP2A nc|ENSG00000163507|Q8TCG1-2|CIP2A nc|ENSG00000163507|Q8TCG1-2|CIP2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25189208984375 2 481.251089 960.487624 1.213 0.00058376 1.884 0.00090666 3.097 0.0014904 481.25230841015815 25.488 0.69551 23.84 23.686 24.382 -1.6482 27 19 2 0 0 0 0.10162 1 4470 4470 55.235 14.995 1 1206100 2286 5433 1204 1206 2620 2620 0.005799891668630153 AETEARTLA 9 Unmodified _AETEARTLA_ 0 0 0 nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENSG00000163507|ENST00000295746|CIP2A nc|ENSG00000163507|Q8TCG1-2|CIP2A nc|ENSG00000163507|Q8TCG1-2|CIP2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7669372558594 2 481.251089 960.487624 0.11138 5.3603E-05 2.7207 0.0013093 2.832 0.0013629 481.252737571751 25.423 0.61759 23.888 23.68 24.297 -1.5342 28 17 3 0 0 0 0.15128 2 4164 4155;4164 43.982 2.2528 1 918800 2287 5433 1204 1206 2621;2622 2622 0.005799891668630153 AETEARTLA 9 Unmodified _AETEARTLA_ 0 0 0 nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENSG00000163507|ENST00000295746|CIP2A nc|ENSG00000163507|Q8TCG1-2|CIP2A nc|ENSG00000163507|Q8TCG1-2|CIP2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2510986328125 2 481.251089 960.487624 -0.1499 -7.2139E-05 3.1024 0.0014931 2.9525 0.0014209 481.2530802264014 25.602 0.65879 23.748 23.638 24.297 -1.8534 27 18 3 0 0 0 0.11282 2 4213 4213;4221 51.415 12.632 1 696730 2288 5433 1204 1206 2623;2624 2623 0.005799891668630153 AETEILGTQ 9 Unmodified _AETEILGTQ_ 0 0 0 ENSG00000173442|ENST00000309295|EHBP1L1;ENST00000526990.1_1_11:65349145-65351290:+|nuORF ENSG00000173442|ENST00000309295|EHBP1L1 ENSG00000173442|ENST00000309295|EHBP1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24560546875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 28.702 1 26.706 26.206 27.206 -1.9962 0 0 0 0.22621 1 4854 4854 15.847 3.3156 1 2289 6293 1205 1207 2625 2625 -0.005428329272717747 AETEKPFPY 9 Unmodified _AETEKPFPY_ 0 0 0 REV__ENSG00000178607|ENST00000433197|ERN1 REV__ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2648315429688 2 541.263665 1080.51278 0.01516 8.2058E-06 0.052112 2.8206E-05 0.067273 3.6412E-05 541.2637370892986 79.385 0.94772 75.581 74.984 75.932 -3.8048 35 26 2 0 0 0 0.66537 1 14967 14967 8.5933 0.68312 1 1213200 + 2290 18615 1206 1208 2626 2626 -0.02425956030560883 AETEVEWFSY 10 Unmodified _AETEVEWFSY_ 0 0 0 REV__ENST00000404933.6_1_X:21996149-21996197:+|nuORF REV__ENST00000404933.6_1_X:21996149-21996197:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7755126953125 2 630.774593 1259.53463 NaN NaN NaN NaN NaN NaN NaN 97.502 1 93.404 92.904 93.904 -4.0978 0 0 0 0.22588 1 19132 19132 6.7232 0 1 + 2291 21380 1207 1209 2627 2627 -0.08475196072640756 AETFCGSGT 9 Unmodified _AETFCGSGT_ 0 0 0 REV__MER49_dup1305|chr21:41210187-41211078:+|1.209497246225798|0.4412608656295442|1.45|483.0|24|3|sense REV__MER49_dup1305|chr21:41210187-41211078:+|1.209497246225798|0.4412608656295442|1.45|483.0|24|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2169189453125 2 436.676368 871.338183 0.083484 3.6455E-05 1.061 0.0004633 1.1445 0.00049975 436.67672085355656 87.334 0.69357 87.334 86.982 87.676 0 36 19 2 0 0 0 0.28819 1 17093 17093 32.305 5.4218 1 2315900 + 2292 23840 1208 1210 2628 2628 -0.1026327944739478 AETFCGSGT 9 Unmodified _AETFCGSGT_ 0 0 0 REV__MER49_dup1305|chr21:41210187-41211078:+|1.209497246225798|0.4412608656295442|1.45|483.0|24|3|sense REV__MER49_dup1305|chr21:41210187-41211078:+|1.209497246225798|0.4412608656295442|1.45|483.0|24|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2166748046875 2 436.676368 871.338183 -0.17728 -7.7413E-05 1.1568 0.00050515 0.97952 0.00042773 436.67672203857734 91.298 0.86137 87.373 86.93 87.791 -3.9251 38 24 2 0 0 0 0.28819 1 17873 17873 32.305 1.6689 1 2052700 + 2293 23840 1208 1210 2629 2629 -0.1026327944739478 AETFRRAKY 9 Unmodified _AETFRRAKY_ 0 0 0 ENSG00000173214|ENST00000671876|MFSD4B ENSG00000173214|ENST00000671876|MFSD4B ENSG00000173214|ENST00000671876|MFSD4B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.20916748046875 3 381.208607 1140.60399 NaN NaN NaN NaN NaN NaN NaN 26.366 1 24.444 23.944 24.944 -1.9222 0 0 0 0.23508 1 4365 4365 5.2969 2.4536 1 2294 6277 1209 1211 2630 2630 0.03931352457425419 AETGILFPGG 10 Unmodified _AETGILFPGG_ 0 0 0 nc|ENSG00000166402|P50607-2|TUB nc|ENSG00000166402|P50607-2|TUB nc|ENSG00000166402|P50607-2|TUB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.253173828125 2 481.2531 960.491647 0.028953 1.3934E-05 0.92318 0.00044428 0.95213 0.00045821 481.25356262062274 24.184 0.64841 24.184 23.827 24.475 0 29 18 2 0 0 0 0.40256 1 4100 4100 30.637 0 1 1849200 2295 12438 1210 1212 2631 2631 0.009820786605814646 AETGILFPGG 10 Unmodified _AETGILFPGG_ 0 0 0 nc|ENSG00000166402|P50607-2|TUB nc|ENSG00000166402|P50607-2|TUB nc|ENSG00000166402|P50607-2|TUB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2527770996094 2 481.2531 960.491647 0.11138 5.3603E-05 -1.4588 -0.00070205 -1.3474 -0.00064845 481.252737571751 25.423 0.61759 23.888 23.68 24.297 -1.5342 28 17 3 0 0 0 0.20847 1 4162 4162 43.858 9.7559 1 918800 2296 12438 1210 1212 2632 2632 0.009820786605814646 AETGPPSQVVP 11 Unmodified _AETGPPSQVVP_ 0 0 0 REV__ENSG00000186918|ENST00000344423|ZNF395 REV__ENSG00000186918|ENST00000344423|ZNF395 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2650146484375 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 46.699 1 46.699 46.199 47.199 0 0 0 0 0.21129 1 8799 8799 16.149 2.2431 1 + 2297 19065 1211 1213 2633 2633 0.008088313724329055 AETGTEKLA 9 Unmodified _AETGTEKLA_ 0 0 0 ENST00000444188.1_1_6:169613405-169614351:+|nuORF ENST00000444188.1_1_6:169613405-169614351:+|nuORF ENST00000444188.1_1_6:169613405-169614351:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2269592285156 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 74.176 1 70.582 70.082 71.082 -3.594 0 0 0 0.22962 1 14083 14083 14.838 0 1 2298 9923 1212 1214 2634 2634 0.0033318441827532297 AETIAFKE 8 Unmodified _AETIAFKE_ 0 0 0 REV__FAM131C|p.Q155K|1|0.27|ENSG00000185519|chr1:16059593-16059593|G/T|missense_variant REV__FAM131C|p.Q155K|1|0.27|ENSG00000185519|chr1:16059593-16059593|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 454.7380065917969 2 454.739825 907.465098 NaN NaN NaN NaN NaN NaN NaN 60.399 1 57.086 56.586 57.586 -3.3139 0 0 0 0.19298 1 11249 11249 0.25148 0 1 + 2299 23511 1213 1215 2635 2635 0.007663897692395949 AETIFVKV 8 Unmodified _AETIFVKV_ 0 0 0 ENSG00000107954|ENST00000369780|NEURL1;nc|ENSG00000107954|O76050-2|NEURL1 ENSG00000107954|ENST00000369780|NEURL1 ENSG00000107954|ENST00000369780|NEURL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76898193359375 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 115.26 1 110.79 110.29 111.29 -4.4726 0 0 0 0.20135 1 22718 22718 24.021 3.1494 1 2300 2451 1214 1216 2636 2636 0.0656785704561571 AETKDIPAA 9 Unmodified _AETKDIPAA_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.232421875 2 458.242732 914.470912 0.39995 0.00018327 -0.16307 -7.4724E-05 0.23688 0.00010855 458.2425625848969 30.309 1.1888 28.192 27.494 28.683 -2.1167 121 33 5 0 0 0 0.5428 1 5452 5452 4.897 0 1 65458000 2301 2393 1215 1217 2637 2637 0.010254882808908405 AETKDIPAA 9 Unmodified _AETKDIPAA_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2350158691406 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 32.134 1 30.107 29.607 30.607 -2.0264 0 0 0 0.19636 1 5566 5566 2.4985 0.59211 1 2302 2393 1215 1217 2638 2638 0.010254882808908405 AETKDIPAA 9 Unmodified _AETKDIPAA_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23052978515625 2 458.242732 914.470912 0.54107 0.00024794 -0.16533 -7.5762E-05 0.37574 0.00017218 458.2426248242289 30.327 1.7832 28.252 27.556 29.339 -2.0743 150 50 5 0 0 0 0.068672 1 5119 5119 47.987 41.596 1 61841000 2303 2393 1215 1217 2639 2639 0.010254882808908405 AETKDIPAA 9 Unmodified _AETKDIPAA_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2196350097656 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 25.645 1 23.792 23.292 24.292 -1.8534 0 0 0 0.23508 1 4225 4225 12.532 4.6214 1 2304 2393 1215 1217 2640 2640 0.010254882808908405 AETKLAEAQ 9 Unmodified _AETKLAEAQ_ 0 0 0 nc|ENSG00000184047|Q9NR28-2|DIABLO;nc|ENSG00000184047|Q9NR28-3|DIABLO;ENSG00000184047|ENST00000464942|DIABLO nc|ENSG00000184047|Q9NR28-2|DIABLO nc|ENSG00000184047|Q9NR28-2|DIABLO MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2545471191406 2 480.753464 959.492375 0.31142 0.00014971 -0.82097 -0.00039468 -0.50955 -0.00024497 480.75295994801303 28.663 1.2197 26.667 26.134 27.354 -1.9962 45 34 2 0 0 0 0.48644 1 4885 4885 20.454 0 1 416560 2305 6887 1216 1218 2641 2641 0.011008733096105061 AETKSPLSP 9 Unmodified _AETKSPLSP_ 0 0 0 REV__ENST00000542579.5_1_10:11377172-11377550:+|nuORF REV__ENST00000542579.5_1_10:11377172-11377550:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2497253417969 2 465.250557 928.486562 -0.085473 -3.9766E-05 0.27556 0.0001282 0.19009 8.8438E-05 465.25063824414684 76.823 1.0821 73.408 72.936 74.018 -3.4151 67 30 3 0 0 0 0.60061 1 15111 15111 13.042 0 1 13965000 + 2306 22876 1217 1219 2642 2642 0.01945774797957256 AETLIFVK 8 Unmodified _AETLIFVK_ 0 0 0 nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA nc|ENSG00000115970|Q6YHU6-2|THADA nc|ENSG00000115970|Q6YHU6-2|THADA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2480163574219 2 460.776211 919.537869 0.122 5.6215E-05 -0.51879 -0.00023905 -0.39679 -0.00018283 460.7760222413708 27.129 0.13745 25.207 25.088 25.226 -1.9222 5 3 2 0 0 0 1.0191 1 4515 4515 4.756 3.9624 1 290720 2307 2897 1218 1220 2643 2643 0.07488143562670757 AETLSQSY 8 Unmodified _AETLSQSY_ 0 0 0 ENSG00000120324|ENST00000239446|PCDHB10 ENSG00000120324|ENST00000239446|PCDHB10 ENSG00000120324|ENST00000239446|PCDHB10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.2778015136719 2 449.711265 897.407977 NaN NaN NaN NaN NaN NaN NaN 54.865 1 51.727 51.227 52.227 -3.1377 0 0 0 0.21486 1 10167 10167 5.7604 0 1 2308 3127 1219 1221 2644 2644 -0.04483077507143207 AETLTFLDA 9 Unmodified _AETLTFLDA_ 0 0 0 ENSG00000115339|ENST00000392701|GALNT3;GALNT3|p.A268T|1|0.22|ENSG00000115339|chr2:165761941-165761941|C/T|missense_variant;ENST00000463254.1_1_2:166615181-166618484:-|nuORF ENSG00000115339|ENST00000392701|GALNT3 ENSG00000115339|ENST00000392701|GALNT3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2767333984375 2 490.75039 979.486227 NaN NaN NaN NaN NaN NaN NaN 156.72 1 151.45 150.95 151.95 -5.2712 0 0 0 0.22621 1 30398 30398 15.847 3.3156 1 2309 2848 1220 1222 2645 2645 -0.004336449219181304 AETNHNGMS 9 Unmodified _AETNHNGMS_ 0 0 0 LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|25|2|anti-sense LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|25|2|anti-sense LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|25|2|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23651123046875 2 480.695623 959.376694 -0.020976 -1.0083E-05 -0.70858 -0.00034061 -0.72955 -0.00035069 480.6953639285217 33.778 0.6247 33.778 33.654 34.278 0 22 17 2 0 0 0 0.80521 1 6163 6163 15.847 0 1 510810 2310 12098 1221 1223 2646 2646 -0.10461973812869019 AETNHNGMS 9 Unmodified _AETNHNGMS_ 0 0 0 LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|25|2|anti-sense LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|25|2|anti-sense LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|25|2|anti-sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.695623 959.376694 0.15698 7.5462E-05 -0.75567 -0.00036325 -0.59869 -0.00028779 480.6953124071315 35.935 0.69979 33.682 33.501 34.201 -2.2527 -0.048201 -1.6865E-05 NaN 15.847 24 19 2 NaN NaN NaN NaN 0 NaN NaN 0 629560 2311 12098 1221 1223 -0.10461973812869019 AETPLRDTG 9 Unmodified _AETPLRDTG_ 0 0 0 ENST00000372980.3_1_20:42815125-42815341:-|nuORF ENST00000372980.3_1_20:42815125-42815341:-|nuORF ENST00000372980.3_1_20:42815125-42815341:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23956298828125 2 480.243264 958.471974 -0.022851 -1.0974E-05 -0.33578 -0.00016125 -0.35863 -0.00017223 480.2431811765089 35.115 0.96834 35.115 34.552 35.52 0 55 27 3 0 0 0 0.46541 1 6453 6453 21.747 3.6003 1 3909700 2312 9188 1222 1224 2647 2647 -0.008922973501739762 AETPPGAGAEW 11 Unmodified _AETPPGAGAEW_ 0 0 0 ENST00000440944.5_2_9:139243188-139244142:+|nuORF ENST00000440944.5_2_9:139243188-139244142:+|nuORF ENST00000440944.5_2_9:139243188-139244142:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7820434570312 2 543.248546 1084.48254 0.34352 0.00018662 -0.60451 -0.0003284 -0.26099 -0.00014178 543.247884131499 91.029 0.68604 86.935 86.639 87.325 -4.0946 30 19 2 0 0 0 0.6353 1 17349 17349 16.149 2.2431 1 2406900 2313 9889 1223 1225 2648 2648 -0.056323146957538484 AETPPGAGAEW 11 Unmodified _AETPPGAGAEW_ 0 0 0 ENST00000440944.5_2_9:139243188-139244142:+|nuORF ENST00000440944.5_2_9:139243188-139244142:+|nuORF ENST00000440944.5_2_9:139243188-139244142:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.248546 1084.48254 0.34352 0.00018662 -0.60451 -0.0003284 -0.26099 -0.00014178 543.247884131499 91.029 0.68604 86.935 86.639 87.325 -4.0946 -0.0090383 -6.0193E-05 NaN 16.149 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2406900 2314 9889 1223 1225 -0.056323146957538484 AETQTCYT 8 Unmodified _AETQTCYT_ 0 0 0 nc|ENSG00000284762|O95263-2|PDE8B;nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B;ENSG00000113231|ENST00000264917|PDE8B;nc|ENSG00000284762|O95263-4|PDE8B nc|ENSG00000284762|O95263-2|PDE8B nc|ENSG00000284762|O95263-2|PDE8B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2290954589844 2 458.689475 915.364398 0.16052 7.363E-05 0.8878 0.00040722 1.0483 0.00048085 458.68982973001937 103.83 0.72549 99.48 99.036 99.762 -4.346 36 20 2 0 0 0 0.9455 1 19876 19876 23.148 1.4018 1 2596100 2315 2729 1224 1226 2649 2649 -0.09667010275938992 AETRGPTSP 9 Unmodified _AETRGPTSP_ 0 0 0 ENST00000590513.2_1_17:40704842-40705703:-|nuORF ENST00000590513.2_1_17:40704842-40705703:-|nuORF ENST00000590513.2_1_17:40704842-40705703:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2311096191406 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 70.3 1 70.3 69.8 70.8 0 0 0 0 0.19674 1 13615 13615 0.12781 0.0049496 1 2316 11603 1225 1227 2650 2650 -0.0148856652166387 AETRPPPPP 9 Unmodified _AETRPPPPP_ 0 0 0 REV__ENSG00000185269|ENST00000409678|NOTUM REV__ENSG00000185269|ENST00000409678|NOTUM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24560546875 2 481.258717 960.50288 NaN NaN NaN NaN NaN NaN NaN 45.807 1 42.942 42.442 43.442 -2.8653 0 0 0 0.23411 1 8316 8316 13.508 4.1604 1 + 2317 18952 1226 1228 2651 2651 0.02104900754704886 AETRPTIK 8 Unmodified _AETRPTIK_ 0 0 0 REV__ZCCHC14|p.N110Mfs*18|1|0.34|ENSG00000140948|chr16:87433156-87433156|T/-|frameshift_variant REV__ZCCHC14|p.N110Mfs*18|1|0.34|ENSG00000140948|chr16:87433156-87433156|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23883056640625 2 458.266542 914.51853 -0.07237 -3.3165E-05 0.32053 0.00014689 0.24816 0.00011372 458.26661808989655 61.201 0.64931 58.268 57.926 58.575 -2.9333 42 18 3 0 0 0 0.52597 1 11844 11844 26.884 2.8631 1 6828700 + 2318 16605 1227 1229 2652 2652 0.05785187271771974 AETSRALTA 9 Unmodified _AETSRALTA_ 0 0 0 ENSG00000198919|ENST00000361582|DZIP3;ENST00000495008.5_1_3:108373019-108406879:+|nuORF ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2462463378906 2 460.245806 918.47706 0.24149 0.00011115 -0.124 -5.7069E-05 0.1175 5.4078E-05 460.2456903165578 23.078 0.41009 23.078 22.892 23.303 0 19 11 2 0 0 0 0.1629 1 3907 3907 42.312 13.231 1 3083300 2319 7526 1228 1230 2653 2653 0.014560065124214816 AETSRALTA 9 Unmodified _AETSRALTA_ 0 0 0 ENSG00000198919|ENST00000361582|DZIP3;ENST00000495008.5_1_3:108373019-108406879:+|nuORF ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2455139160156 2 460.245806 918.47706 0.91444 0.00042087 -0.65024 -0.00029927 0.2642 0.0001216 460.2454605608259 24.532 0.37711 22.884 22.683 23.06 -1.6482 20 10 2 0 0 0 0.053446 2 4256 4256;4306 69.338 36.553 1 2411700 2320 7526 1228 1230 2654;2655 2654 0.014560065124214816 AETSRALTA 9 Unmodified _AETSRALTA_ 0 0 0 ENSG00000198919|ENST00000361582|DZIP3;ENST00000495008.5_1_3:108373019-108406879:+|nuORF ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2460632324219 2 460.245806 918.47706 -0.033323 -1.5337E-05 0.37841 0.00017416 0.34508 0.00015882 460.24598789649013 24.471 0.37945 22.937 22.714 23.094 -1.5342 17 10 2 0 0 0 0.10724 1 3968 3968 53.317 24.235 1 2167500 2321 7526 1228 1230 2656 2656 0.014560065124214816 AETSRALTA 9 Unmodified _AETSRALTA_ 0 0 0 ENSG00000198919|ENST00000361582|DZIP3;ENST00000495008.5_1_3:108373019-108406879:+|nuORF ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2459716796875 2 460.245806 918.47706 -0.23728 -0.00010921 0.48372 0.00022263 0.24645 0.00011343 460.2460745372215 24.693 0.37291 22.84 22.642 23.015 -1.8534 20 10 2 0 0 0 0.066912 1 4007 4007 65.474 36.392 1 1491800 2322 7526 1228 1230 2657 2657 0.014560065124214816 AETSSRKK 8 Unmodified _AETSSRKK_ 0 0 0 REV__ENST00000482891.5_1_2:202587756-202633608:-|nuORF REV__ENST00000482891.5_1_2:202587756-202633608:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7532043457031 2 453.753798 905.493044 NaN NaN NaN NaN NaN NaN NaN 29.529 1 27.573 27.073 28.073 -1.9561 0 0 0 0.23811 1 5308 5308 0.063987 0 1 + 2323 13827 1229 1231 2658 2658 0.036517127493425505 AETSSRKK 8 Unmodified _AETSSRKK_ 0 0 0 REV__ENST00000482891.5_1_2:202587756-202633608:-|nuORF REV__ENST00000482891.5_1_2:202587756-202633608:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75341796875 2 453.753798 905.493044 0.42678 0.00019365 -1.8624 -0.00084508 -1.4356 -0.00065143 453.7530870201892 29.383 0.48722 27.309 27.102 27.59 -2.0743 18 13 2 0 0 0 8448 1 5011 5011 0.25148 0.12861 1 298320 + 2324 13827 1229 1231 2659 2659 0.036517127493425505 AETTSGTFLSA 11 Unmodified _AETTSGTFLSA_ 0 0 0 ENSG00000120158|ENST00000381750|RCL1;nc|ENSG00000120158|Q9Y2P8-2|RCL1 ENSG00000120158|ENST00000381750|RCL1 ENSG00000120158|ENST00000381750|RCL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.782958984375 2 542.761486 1083.50842 0.18611 0.00010102 -0.26661 -0.00014471 -0.080496 -4.369E-05 542.761339299392 91.372 0.99224 87.447 87.063 88.056 -3.9251 67 28 3 0 0 0 0.53231 1 17912 17912 21.537 8.4945 1 8449400 2325 3121 1230 1232 2660 2660 -0.029994652441246217 AETTSGTFLSA 11 Unmodified _AETTSGTFLSA_ 0 0 0 ENSG00000120158|ENST00000381750|RCL1;nc|ENSG00000120158|Q9Y2P8-2|RCL1 ENSG00000120158|ENST00000381750|RCL1 ENSG00000120158|ENST00000381750|RCL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7825317382812 2 542.761486 1083.50842 0.31899 0.00017313 -0.2499 -0.00013563 0.069089 3.7499E-05 542.761278148973 91.66 0.81988 87.565 87.161 87.981 -4.0946 58 23 3 0 0 0 0.12917 2 17452 17452;17470 43.191 31.866 1 6942500 2326 3121 1230 1232 2661;2662 2661 -0.029994652441246217 AETTSGTFLSA 11 Unmodified _AETTSGTFLSA_ 0 0 0 ENSG00000120158|ENST00000381750|RCL1;nc|ENSG00000120158|Q9Y2P8-2|RCL1 ENSG00000120158|ENST00000381750|RCL1 ENSG00000120158|ENST00000381750|RCL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.790771484375 2 542.761486 1083.50842 0.21661 0.00011757 -0.033366 -1.811E-05 0.18325 9.9459E-05 542.7613716642005 91.398 0.83508 87.589 87.164 87.999 -3.8083 60 23 3 0 0 0 0.53231 1 17478 17478 21.537 9.0054 1 7358200 2327 3121 1230 1232 2663 2663 -0.029994652441246217 AETVDKWL 8 Unmodified _AETVDKWL_ 0 0 0 REV__ENSG00000183751|ENST00000568546|TBL3 REV__ENSG00000183751|ENST00000568546|TBL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2539367675781 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 85.22 1 81.508 81.008 82.008 -3.7117 0 0 0 0.21171 1 16280 16280 15.847 0 1 + 2328 18858 1231 1233 2664 2664 0.00982078660570096 AETVDPRQ 8 Unmodified _AETVDPRQ_ 0 0 0 REV__ENST00000590408.1_1_19:33980916-34002000:-|nuORF REV__ENST00000590408.1_1_19:33980916-34002000:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2304382324219 2 458.230156 914.445759 0.22352 0.00010243 0.037413 1.7144E-05 0.26094 0.00011957 458.2301480819281 19.406 0.31192 19.406 19.276 19.588 0 14 8 2 0 0 0 8448 1 3167 3167 9.544 7.8017 1 616030 + 2329 23320 1232 1234 2665 2665 -0.0148856652166387 AETVDPRQ 8 Unmodified _AETVDPRQ_ 0 0 0 REV__ENST00000590408.1_1_19:33980916-34002000:-|nuORF REV__ENST00000590408.1_1_19:33980916-34002000:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23028564453125 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 32.693 1 32.693 32.193 33.193 0 0 0 0 0.2343 1 5947 5947 0.12286 0 1 + 2330 23320 1232 1234 2666 2666 -0.0148856652166387 AETVDPRQ 8 Unmodified _AETVDPRQ_ 0 0 0 REV__ENST00000590408.1_1_19:33980916-34002000:-|nuORF REV__ENST00000590408.1_1_19:33980916-34002000:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2296447753906 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.54 1 39.821 39.321 40.321 -2.7191 0 0 0 0.23025 1 7961 7961 0.68139 0 1 + 2331 23320 1232 1234 2667 2667 -0.0148856652166387 AETVDPRQ 8 Unmodified _AETVDPRQ_ 0 0 0 REV__ENST00000590408.1_1_19:33980916-34002000:-|nuORF REV__ENST00000590408.1_1_19:33980916-34002000:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23040771484375 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 34.953 1 32.677 32.177 33.177 -2.2766 0 0 0 0.2343 1 6139 6139 0.12286 0 1 + 2332 23320 1232 1234 2668 2668 -0.0148856652166387 AETVEWLRQRY 11 Unmodified _AETVEWLRQRY_ 0 0 0 FAM13B|p.F782Lfs*18|2|0.29|ENSG00000031003|chr5:137943145-137943145|A/-|frameshift_variant;nc|ENSG00000031003|Q9NYF5-2|FAM13B;nc|ENSG00000031003|Q9NYF5|FAM13B;ENSG00000031003|ENST00000689681|FAM13B FAM13B|p.F782Lfs*18|2|0.29|ENSG00000031003|chr5:137943145-137943145|A/-|frameshift_variant FAM13B|p.F782Lfs*18|2|0.29|ENSG00000031003|chr5:137943145-137943145|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 484.2619323730469 3 484.252764 1449.73646 NaN NaN NaN NaN NaN NaN NaN 117.61 1 113 112.5 113.5 -4.6106 0 0 0 0.22632 1 22573 22573 0.172 0 1 2333 1157 1233 1235 2669 2669 0.0295833240356842 AETVGRLSS 9 Unmodified _AETVGRLSS_ 0 0 0 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1;REV__nc|ENSG00000163539|O75122|CLASP2 REV__nc|ENSG00000163539|O75122|CLASP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24481201171875 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 82.575 1 78.701 78.201 79.201 -3.8736 0 0 0 0.22251 1 15692 15692 16.942 2.104 1 + 2334 13441;14309 1234 1236 2670 2670 0.014560065124328503 AETWLIQT 8 Unmodified _AETWLIQT_ 0 0 0 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2536926269531 2 481.2531 960.491647 -0.046056 -2.2165E-05 0.089283 4.2968E-05 0.043227 2.0803E-05 481.2529712881447 19.05 0.76262 19.05 18.652 19.415 0 38 21 3 0 0 0 0.64227 1 3150 3150 19.439 1.2926 1 5695900 + 2335 24128 1235 1237 2671 2671 0.00982078660570096 AETYQRLHYL 10 Unmodified _AETYQRLHYL_ 0 0 0 REV__CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant REV__CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.89080810546875 3 431.891055 1292.65134 NaN NaN NaN NaN NaN NaN NaN 148.94 1 148.94 148.44 149.44 0 0 0 0 0.22588 1 29811 29811 1.7423 0.52744 1 + 2336 13462 1236 1238 2672 2672 0.01671586937777647 AEVAATTATPD 11 Unmodified _AEVAATTATPD_ 0 0 0 nc|ENSG00000139977|Q147X3-2|NAA30;ENSG00000139977|ENST00000556492|NAA30 nc|ENSG00000139977|Q147X3-2|NAA30 nc|ENSG00000139977|Q147X3-2|NAA30 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6884765625 2 523.753661 1045.49277 0.15469 8.1022E-05 1.551 0.00081232 1.7057 0.00089334 523.7544338098604 19.867 0.34133 19.867 19.725 20.066 0 13 9 2 0 0 0 0.86301 1 3299 3299 21.537 4.4241 1 850010 2337 4274 1237 1239 2673 2673 -0.028157517612044103 AEVAERLVA 9 Unmodified _AEVAERLVA_ 0 0 0 REV__LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant REV__LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7235107421875 2 479.271824 956.529095 -0.047539 -2.2784E-05 -0.11298 -5.415E-05 -0.16052 -7.6934E-05 479.2716786887726 35.114 0.4567 35.114 34.889 35.346 0 25 12 3 0 0 0 0.56623 1 6459 6459 34.402 3.7652 1 1554600 + 2338 19917 1238 1240 2674 2674 0.04909169926179402 AEVAGAGRLA 10 Unmodified _AEVAGAGRLA_ 0 0 0 ENST00000233615.6_2_2:74685568-74685718:+|nuORF;ENST00000466835.5_1_2:74685568-74686813:+|nuORF ENST00000233615.6_2_2:74685568-74685718:+|nuORF ENST00000233615.6_2_2:74685568-74685718:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2338562011719 2 457.756341 913.498129 -0.42916 -0.00019645 0.448 0.00020508 0.018839 8.6237E-06 457.7565500553899 38.417 0.38902 35.868 35.699 36.088 -2.5491 20 10 2 0 0 0 0.21282 1 7134 7134 53.404 3.471 1 6024700 2339 8162 1239 1241 2675 2675 0.03792016611942017 AEVAGAGRLA 10 Unmodified _AEVAGAGRLA_ 0 0 0 ENST00000233615.6_2_2:74685568-74685718:+|nuORF;ENST00000466835.5_1_2:74685568-74686813:+|nuORF ENST00000233615.6_2_2:74685568-74685718:+|nuORF ENST00000233615.6_2_2:74685568-74685718:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23419189453125 2 457.756341 913.498129 0.0046339 2.1212E-06 0.17498 8.0099E-05 0.17962 8.2221E-05 457.75640555052087 38.371 0.45451 35.929 35.74 36.195 -2.4419 28 12 3 0 0 0 0.4324 1 6809 6809 38.615 4.213 1 6942400 2340 8162 1239 1241 2676 2676 0.03792016611942017 AEVAGAGRLA 10 Unmodified _AEVAGAGRLA_ 0 0 0 ENST00000233615.6_2_2:74685568-74685718:+|nuORF;ENST00000466835.5_1_2:74685568-74686813:+|nuORF ENST00000233615.6_2_2:74685568-74685718:+|nuORF ENST00000233615.6_2_2:74685568-74685718:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2339782714844 2 457.756341 913.498129 0.1805 8.2625E-05 0.079309 3.6304E-05 0.25981 0.00011893 457.75635938286877 38.346 0.52237 35.941 35.709 36.231 -2.4049 34 14 3 0 0 0 0.35759 1 6820 6820 51.415 27.395 1 4396600 2341 8162 1239 1241 2677 2677 0.03792016611942017 AEVAGLLDQ 9 Unmodified _AEVAGLLDQ_ 0 0 0 REV__CCDC170|p.S262G|1|0.1|ENSG00000120262|chr6:151573183-151573183|A/G|missense_variant REV__CCDC170|p.S262G|1|0.1|ENSG00000120262|chr6:151573183-151573183|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2390441894531 2 458.242732 914.470912 -0.31364 -0.00014372 -0.67754 -0.00031048 -0.99119 -0.0004542 458.24218914145115 104.67 0.42216 100.45 100.4 100.82 -4.2183 12 11 2 0 0 0 0.6329 1 20638 20638 10.824 0.75 1 1715000 + 2342 13291 1240 1242 2678 2678 0.010254882808908405 AEVAGLLDQ 9 Unmodified _AEVAGLLDQ_ 0 0 0 REV__CCDC170|p.S262G|1|0.1|ENSG00000120262|chr6:151573183-151573183|A/G|missense_variant REV__CCDC170|p.S262G|1|0.1|ENSG00000120262|chr6:151573183-151573183|A/G|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.242732 914.470912 -0.31364 -0.00014372 -0.67754 -0.00031048 -0.99119 -0.0004542 458.24218914145115 104.67 0.42216 100.45 100.4 100.82 -4.2183 0 0 NaN 10.824 12 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1715000 + 2343 13291 1240 1242 0.010254882808908405 AEVAIVSAA 9 Unmodified _AEVAIVSAA_ 0 0 0 ENST00000440088.5_1_7:77325266-77325488:-|nuORF ENST00000440088.5_1_7:77325266-77325488:-|nuORF ENST00000440088.5_1_7:77325266-77325488:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.2531433105469 2 415.734543 829.454533 -0.15694 -6.5245E-05 0.3435 0.0001428 0.18656 7.7558E-05 415.73460599375244 81.485 0.83366 77.928 77.546 78.38 -3.557 46 23 3 0 0 0 0.65155 1 15945 15945 21.747 9.2151 1 3075600 2344 9881 1241 1243 2679 2679 0.0329840711478937 AEVAIVSAA 9 Unmodified _AEVAIVSAA_ 0 0 0 ENST00000440088.5_1_7:77325266-77325488:-|nuORF ENST00000440088.5_1_7:77325266-77325488:-|nuORF ENST00000440088.5_1_7:77325266-77325488:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 415.734543 829.454533 0.41569 0.00017282 -0.26428 -0.00010987 0.15141 6.2946E-05 415.73440055433457 78.218 0.76826 78.218 77.737 78.506 0 0.14794 -0.00043388 NaN 21.747 38 21 2 NaN NaN NaN NaN 0 NaN NaN 0 3875100 2345 9881 1241 1243 0.0329840711478937 AEVAIVSAA 9 Unmodified _AEVAIVSAA_ 0 0 0 ENST00000440088.5_1_7:77325266-77325488:-|nuORF ENST00000440088.5_1_7:77325266-77325488:-|nuORF ENST00000440088.5_1_7:77325266-77325488:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 415.734543 829.454533 0.019953 8.2952E-06 0.15556 6.467E-05 0.17551 7.2965E-05 415.73456112687575 81.942 0.78947 78.102 77.678 78.467 -3.8392 0.032652 -8.48E-05 NaN 21.747 39 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2964800 2346 9881 1241 1243 0.0329840711478937 AEVAIVSAA 9 Unmodified _AEVAIVSAA_ 0 0 0 ENST00000440088.5_1_7:77325266-77325488:-|nuORF ENST00000440088.5_1_7:77325266-77325488:-|nuORF ENST00000440088.5_1_7:77325266-77325488:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 415.734543 829.454533 -0.5288 -0.00021984 0.67221 0.00027946 0.14341 5.962E-05 415.7347522083008 81.719 0.90134 78.031 77.66 78.562 -3.6879 -0.038892 0.00034478 NaN 21.747 43 25 2 NaN NaN NaN NaN 0 NaN NaN 0 3243900 2347 9881 1241 1243 0.0329840711478937 AEVAPMLKA 9 Unmodified _AEVAPMLKA_ 0 0 0 nc|ENSG00000162413|Q9UJP4-2|KLHL21;ENSG00000162413|ENST00000377658|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2593688964844 2 465.259871 928.505189 0.43972 0.00020459 -0.50171 -0.00023342 -0.061981 -2.8837E-05 465.2595748316433 77.162 0.96639 77.162 76.91 77.876 0 45 27 2 0 0 0 0.11219 1 15002 15002 51.63 13.656 1 2323600 2348 12411 1242 1244 2680 2680 0.03807613168157786 AEVAPMLKA 9 Unmodified _AEVAPMLKA_ 0 0 0 nc|ENSG00000162413|Q9UJP4-2|KLHL21;ENSG00000162413|ENST00000377658|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23663330078125 2 465.259871 928.505189 -0.041344 -1.9236E-05 0.076696 3.5683E-05 0.035351 1.6448E-05 465.2598130693157 80.849 0.90919 77.292 76.708 77.618 -3.557 43 25 2 0 0 0 0.30618 2 15757 15690;15757 31.268 9.1823 1 2295400 2349 12411 1242 1244 2681;2682 2682 0.03807613168157786 AEVAPMLKA 9 Unmodified _AEVAPMLKA_ 0 0 0 nc|ENSG00000162413|Q9UJP4-2|KLHL21;ENSG00000162413|ENST00000377658|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2592468261719 2 465.259871 928.505189 -0.035642 -1.6583E-05 0.027914 1.2987E-05 -0.0077287 -3.5958E-06 465.2597991315714 81.203 1.0488 77.364 76.664 77.713 -3.8392 54 29 2 0 0 0 0.25183 1 15324 15324 34.402 16.255 1 1823600 2350 12411 1242 1244 2683 2683 0.03807613168157786 AEVAQWRSK 9 Unmodified _AEVAQWRSK_ 0 0 0 ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B ENSG00000078814|ENST00000262873|MYH7B ENSG00000078814|ENST00000262873|MYH7B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 538.1504516601562 2 537.788173 1073.56179 0.060067 3.2303E-05 -3.0531 -0.0016419 -2.993 -0.0016096 538.2895560556223 34.049 0.17628 31.732 31.664 31.84 -2.3175 5 4 2 0 0 0 0.80521 1 6244 6244 10.824 1.4765 1 300320 2351 1587 1243 1245 2684 2684 0.027953770490285024 AEVASLDVA 9 Unmodified _AEVASLDVA_ 0 0 0 ENSG00000149929|ENST00000279392|HIRIP3;nc|ENSG00000149929|Q9BW71-2|HIRIP3 ENSG00000149929|ENST00000279392|HIRIP3 ENSG00000149929|ENST00000279392|HIRIP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2359924316406 2 437.729458 873.444362 -0.21175 -9.2689E-05 0.40467 0.00017713 0.19292 8.4446E-05 437.72972375620196 88.138 0.5364 84.345 83.981 84.518 -3.7926 23 14 2 0 0 0 0.42289 1 17227 17227 25.399 4.9457 1 862490 2352 4816 1244 1246 2685 2685 0.002577993895556574 AEVASLDVA 9 Unmodified _AEVASLDVA_ 0 0 0 ENSG00000149929|ENST00000279392|HIRIP3;nc|ENSG00000149929|Q9BW71-2|HIRIP3 ENSG00000149929|ENST00000279392|HIRIP3 ENSG00000149929|ENST00000279392|HIRIP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 437.729458 873.444362 0.25252 0.00011054 -0.30102 -0.00013177 -0.048501 -2.123E-05 437.72923322439203 84.475 0.24585 84.475 84.381 84.627 0 0.065039 -0.0002429 NaN 25.399 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1037700 2353 4816 1244 1246 0.002577993895556574 AEVCKVHNG 9 Unmodified _AEVCKVHNG_ 0 0 0 REV__RFXANK|p.R199C|1|0.46|ENSG00000064490|chr19:19198687-19198687|C/T|missense_variant REV__RFXANK|p.R199C|1|0.46|ENSG00000064490|chr19:19198687-19198687|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73309326171875 2 478.734551 955.45455 NaN NaN NaN NaN NaN NaN NaN 18.22 1 16.948 16.448 17.448 -1.2722 0 0 0 0.19628 1 2722 2722 0.073264 0 1 + 2354 14169 1245 1247 2686 2686 -0.024959161568403943 AEVDDILAA 9 Unmodified _AEVDDILAA_ 0 0 0 ENST00000482031.5_1_2:238973007-238991399:+|nuORF;nc|ENSG00000132330|Q96I15-2|SCLY;ENSG00000132330|ENST00000254663|SCLY ENST00000482031.5_1_2:238973007-238991399:+|nuORF ENST00000482031.5_1_2:238973007-238991399:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2396545410156 2 458.73474 915.454927 0.23337 0.00010705 0.057644 2.6443E-05 0.29101 0.0001335 458.7347152593885 112.36 0.929 112.36 111.94 112.87 0 59 26 3 0 0 0 0.42289 1 22180 22180 32.305 11.852 1 10000000 2355 3717 1246 1248 2687 2687 -0.006182179560028089 AEVDDILAA 9 Unmodified _AEVDDILAA_ 0 0 0 ENST00000482031.5_1_2:238973007-238991399:+|nuORF;nc|ENSG00000132330|Q96I15-2|SCLY;ENSG00000132330|ENST00000254663|SCLY ENST00000482031.5_1_2:238973007-238991399:+|nuORF ENST00000482031.5_1_2:238973007-238991399:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 459.7535705566406 2 458.73474 915.454927 0.47244 0.00021672 -0.20152 -9.2446E-05 0.27091 0.00012428 458.7345974861378 116.72 1.0248 112.36 111.88 112.91 -4.3585 61 28 3 0 0 0 0.28246 1 22488 22488 22.621 20.878 1 9272900 2356 3717 1246 1248 2688 2688 -0.006182179560028089 AEVDEHCL 8 Unmodified _AEVDEHCL_ 0 0 0 REV__ENSG00000167657|ENST00000545797|DAPK3 REV__ENSG00000167657|ENST00000545797|DAPK3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2383728027344 2 458.197467 914.380382 0.56848 0.00026048 0.35281 0.00016166 0.92129 0.00042213 458.1975786848879 104.52 0.65707 104.52 104.24 104.9 0 31 18 2 0 0 0 0.96284 1 20569 20569 19.439 0 1 2422900 + 2357 17952 1247 1249 2689 2689 -0.08023304039022605 AEVDGYLPV 9 Unmodified _AEVDGYLPV_ 0 0 0 ENST00000591097.5_1_19:1271671-1272439:+|nuORF ENST00000591097.5_1_19:1271671-1272439:+|nuORF ENST00000591097.5_1_19:1271671-1272439:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7682800292969 2 481.745108 961.475663 NaN NaN NaN NaN NaN NaN NaN 60.35 1 60.35 59.85 60.85 0 0 0 0 0.23508 1 11568 11568 12.532 3.9383 1 2358 11611 1248 1250 2690 2690 -0.006616275763235535 AEVEDYGF 8 Unmodified _AEVEDYGF_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3;ENST00000601881.1_1_19:38610303-38621413:+|nuORF ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2589416503906 2 465.19799 928.381428 NaN NaN NaN NaN NaN NaN NaN 48.938 1 48.938 48.438 49.438 0 0 0 0 0.21323 1 9245 9245 14.582 0 1 2359 2339 1249 1251 2691 2691 -0.08562766398472377 AEVEDYGF 8 Unmodified _AEVEDYGF_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3;ENST00000601881.1_1_19:38610303-38621413:+|nuORF ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23992919921875 2 465.19799 928.381428 -0.47845 -0.00022257 0.53068 0.00024687 0.052228 2.4296E-05 465.19826073828784 36.105 0.64008 33.711 33.484 34.124 -2.3938 29 17 2 0 0 0 0.89552 1 6686 6686 26.341 0 1 2706400 2360 2339 1249 1251 2692 2692 -0.08562766398472377 AEVEDYGF 8 Unmodified _AEVEDYGF_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3;ENST00000601881.1_1_19:38610303-38621413:+|nuORF ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.239990234375 2 465.19799 928.381428 0.092255 4.2917E-05 0.40834 0.00018996 0.5006 0.00023288 465.1981630050274 36.136 0.73086 33.788 33.512 34.243 -2.3479 45 20 3 0 0 0 0.89552 1 6374 6374 26.341 6.9023 1 3273600 2361 2339 1249 1251 2693 2693 -0.08562766398472377 AEVEEEEEE 9 Unmodified _AEVEEEEEE_ 0 0 0 REV__nc|ENSG00000170004|Q12873-3|CHD3;REV__ENSG00000161714|ENST00000619929|PLCD3 REV__nc|ENSG00000170004|Q12873-3|CHD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.81536865234375 3 364.812024 1091.41424 -0.30419 -0.00011097 0.059383 2.1664E-05 -0.2448 -8.9307E-05 364.8119960345261 90.962 1.0276 87.102 86.582 87.61 -3.8595 83 29 4 0 0 0 0.55219 1 17830 17830 2.6312 0 1 7687100 + 2362 24159;17467 1250 1252 2694 2694 -0.1278064885693766 AEVEGAGVKA 10 Unmodified _AEVEGAGVKA_ 0 0 0 ENST00000491911.5_1_9:140508423-140509541:+|nuORF;ENSG00000197070|ENST00000371421|ARRDC1 ENST00000491911.5_1_9:140508423-140509541:+|nuORF ENST00000491911.5_1_9:140508423-140509541:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2589111328125 2 465.748182 929.481811 0.94766 0.00044137 -0.69192 -0.00032226 0.25575 0.00011911 465.7477013484407 26.943 0.44864 25.161 24.926 25.375 -1.7821 27 12 3 0 0 0 0.24918 1 4780 4780 71.708 19.44 1 3554600 2363 7325 1251 1253 2695 2695 0.014248906551983964 AEVEGAGVKA 10 Unmodified _AEVEGAGVKA_ 0 0 0 ENST00000491911.5_1_9:140508423-140509541:+|nuORF;ENSG00000197070|ENST00000371421|ARRDC1 ENST00000491911.5_1_9:140508423-140509541:+|nuORF ENST00000491911.5_1_9:140508423-140509541:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.748182 929.481811 0.17065 7.9479E-05 0.098585 4.5916E-05 0.26923 0.00012539 465.7481227244817 25.274 0.30976 25.274 25.081 25.391 0 0.053137 0.00016222 NaN 78.06 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 3266000 2364 7325 1251 1253 0.014248906551983964 AEVEGAGVKA 10 Unmodified _AEVEGAGVKA_ 0 0 0 ENST00000491911.5_1_9:140508423-140509541:+|nuORF;ENSG00000197070|ENST00000371421|ARRDC1 ENST00000491911.5_1_9:140508423-140509541:+|nuORF ENST00000491911.5_1_9:140508423-140509541:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.748182 929.481811 0.13577 6.3233E-05 -0.011343 -5.283E-06 0.12442 5.795E-05 465.74809346376145 26.91 0.45448 25.276 24.966 25.421 -1.6347 0.054761 5.9819E-05 NaN 78.06 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 5317000 2365 7325 1251 1253 0.014248906551983964 AEVEKLKL 8 Unmodified _AEVEKLKL_ 0 0 0 REV__ENSG00000139437|ENST00000405876|TCHP REV__ENSG00000139437|ENST00000405876|TCHP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2495422363281 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 101.35 1 97.056 96.556 97.556 -4.297 0 0 0 0.2074 1 19395 19395 19.439 0.077054 1 + 2366 16518 1252 1254 2696 2696 0.09219528591370363 AEVEMTSY 8 Unmodified _AEVEMTSY_ 0 0 0 nc|ENSG00000126838|P20742-2|PZP;ENSG00000126838|ENST00000261336|PZP;ENSG00000175899|ENST00000318602|A2M nc|ENSG00000126838|P20742-2|PZP;ENSG00000175899|ENST00000318602|A2M ENSG00000175899|ENST00000318602|A2M MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2571716308594 2 465.199676 928.384799 NaN NaN NaN NaN NaN NaN NaN 62.597 1 59.357 58.857 59.857 -3.2395 0 0 0 0.21323 1 11735 11735 14.582 0 1 2367 6440;3450 1253 1255 2697 2697 -0.08225839616125086 AEVEQRTP 8 Unmodified _AEVEQRTP_ 0 0 0 REV__PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant REV__PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2409362792969 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 80.815 1 76.975 76.475 77.475 -3.8392 0 0 0 0.22628 1 15340 15340 2.643 1.188 1 + 2368 16754 1254 1256 2698 2698 -0.005682800046201919 AEVEQVAAY 9 Unmodified _AEVEQVAAY_ 0 0 0 REV__PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant REV__PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2542419433594 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 31.485 1 31.485 30.985 31.985 0 0 0 0 0.23508 1 5688 5688 12.532 1.4171 1 + 2369 14345 1255 1257 2699 2699 -0.0242681558172535 AEVETREK 8 Unmodified _AEVETREK_ 0 0 0 BRF2|p.P374Lfs*16|1|0.2|ENSG00000104221|chr8:37844629-37844629|G/-|frameshift_variant;nc|ENSG00000104221|Q9HAW0-2|BRF2;ENSG00000104221|ENST00000220659|BRF2 BRF2|p.P374Lfs*16|1|0.2|ENSG00000104221|chr8:37844629-37844629|G/-|frameshift_variant BRF2|p.P374Lfs*16|1|0.2|ENSG00000104221|chr8:37844629-37844629|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2510070800781 2 481.251089 960.487624 0.17368 8.3586E-05 -0.022723 -1.0935E-05 0.15096 7.265E-05 481.25107001108034 26.451 0.34968 24.816 24.616 24.966 -1.6347 17 9 2 0 0 0 0.62642 1 4418 4418 20.454 1.1966 1 861280 2370 331 1256 1258 2700 2700 0.005799891668630153 AEVEVSIPA 9 Unmodified _AEVEVSIPA_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22955322265625 2 457.745108 913.475663 0.6673 0.00030545 -0.42177 -0.00019306 0.24553 0.00011239 457.7448198443969 102.53 1.079 102.53 101.89 102.97 0 64 30 3 0 0 0 0.064056 2 20185 20083;20185 34.102 24.113 1 11791000 2371 2877 1257 1259 2701;2702 2702 0.015463724236724374 AEVEVSIPA 9 Unmodified _AEVEVSIPA_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2247619628906 2 457.745108 913.475663 0.71341 0.00032656 -0.45159 -0.00020671 0.26181 0.00011984 457.7448567375448 106.54 1.2422 102.45 101.71 102.95 -4.0913 75 35 3 0 0 0 0.054622 1 20538 20538 22.621 19.738 1 14460000 2372 2877 1257 1259 2703 2703 0.015463724236724374 AEVFMIEGGL 10 Unmodified _AEVFMIEGGL_ 0 0 0 REV__LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant REV__LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2705078125 2 533.267893 1064.52123 NaN NaN NaN NaN NaN NaN NaN 102.82 1 98.633 98.133 99.133 -4.1861 0 0 0 0.21574 1 20212 20212 25.399 6.1423 1 + 2373 14854 1258 1260 2704 2704 -0.008447253855820236 AEVFVRAGL 9 Unmodified _AEVFVRAGL_ 0 0 0 ARAP3|p.T186Pfs*109|1|0.18|ENSG00000120318|chr5:141679792-141679792|G/-|frameshift_variant ARAP3|p.T186Pfs*109|1|0.18|ENSG00000120318|chr5:141679792-141679792|G/-|frameshift_variant ARAP3|p.T186Pfs*109|1|0.18|ENSG00000120318|chr5:141679792-141679792|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7785949707031 2 481.276909 960.539266 -0.24277 -0.00011684 0.50743 0.00024421 0.26466 0.00012737 481.277128205733 57.277 1.9408 57.277 56.536 58.477 0 96 55 2 0 0 0 0.41081 1 11037 11037 0.37959 0 1 1919100 2374 193 1259 1261 2705 2705 0.05741777651417124 AEVFVRAGL 9 Unmodified _AEVFVRAGL_ 0 0 0 ARAP3|p.T186Pfs*109|1|0.18|ENSG00000120318|chr5:141679792-141679792|G/-|frameshift_variant ARAP3|p.T186Pfs*109|1|0.18|ENSG00000120318|chr5:141679792-141679792|G/-|frameshift_variant ARAP3|p.T186Pfs*109|1|0.18|ENSG00000120318|chr5:141679792-141679792|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7787170410156 2 481.276909 960.539266 0.028372 1.3655E-05 0.078599 3.7828E-05 0.10697 5.1483E-05 481.27695501245694 60.203 1.8683 57.27 56.469 58.337 -2.9333 76 53 2 0 0 0 0.37087 1 11673 11673 1.2148 0.80657 1 1561600 2375 193 1259 1261 2706 2706 0.05741777651417124 AEVGDIMKV 9 Unmodified _AEVGDIMKV_ 0 0 0 CON__Q28107 CON__Q28107 CON__Q28107 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24493408203125 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 118.17 1 113.76 113.26 114.26 -4.4088 0 0 0 0.23508 1 22741 22741 10.824 0 1 + 2376 684 1260 1262 2707 2707 0.013190054429287557 AEVIFEEPN 9 Unmodified _AEVIFEEPN_ 0 0 0 REV__nc|ENSG00000006744|Q9BQ52-3|ELAC2 REV__nc|ENSG00000006744|Q9BQ52-3|ELAC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6830444335938 2 524.253297 1046.49204 0.55435 0.00029062 -0.57157 -0.00029965 -0.017225 -9.03E-06 524.2529448624763 115.81 1.5244 111.45 110.71 112.24 -4.3585 97 42 3 0 0 0 0.47479 1 22366 22366 24.021 3.5669 1 3253400 + 2377 13880 1261 1263 2708 2708 -0.029345464102334518 AEVIVNYTA 9 Unmodified _AEVIVNYTA_ 0 0 0 REV__ENSG00000115414|ENST00000354785|FN1 REV__ENSG00000115414|ENST00000354785|FN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2583923339844 2 490.258382 978.502212 -0.056015 -2.7462E-05 0.35437 0.00017373 0.29835 0.00014627 490.2584758986829 38.384 0.42171 35.979 35.809 36.231 -2.4049 25 11 3 0 0 0 0.44932 1 6871 6871 22.736 4.6013 1 1807900 + 2378 15427 1262 1264 2709 2709 0.01210061314975519 AEVKAVVA 8 Unmodified _AEVKAVVA_ 0 0 0 SOWAHB|p.H581Pfs*14|1|0.25|ENSG00000186212|chr4:76896108-76896109|-/GG|frameshift_variant;ENSG00000186212|ENST00000334306|SOWAHB SOWAHB|p.H581Pfs*14|1|0.25|ENSG00000186212|chr4:76896108-76896109|-/GG|frameshift_variant SOWAHB|p.H581Pfs*14|1|0.25|ENSG00000186212|chr4:76896108-76896109|-/GG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 394.1941833496094 2 393.739628 785.464704 -0.50383 -0.00019838 -0.37721 -0.00014852 -0.88104 -0.0003469 393.7394073768965 35.422 0.50178 33.029 32.774 33.276 -2.3938 22 13 2 0 0 0 8448 1 6511 6511 39.111 15.389 1 1578500 2379 7044 1263 1265 2710 2710 0.06339014840034451 AEVKKIYK 8 Unmodified _AEVKKIYK_ 0 0 0 REV__tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1 REV__tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2553405761719 2 489.80276 977.590967 0.96836 0.00047431 -0.50171 -0.00024574 0.46665 0.00022857 489.80247015773386 23.699 0.34532 22.146 21.94 22.285 -1.5532 15 9 2 0 0 0 1.0254 1 4122 4122 5.2307 2.2354 1 823420 + 2380 24859 1264 1266 2711 2711 0.1012752134532775 AEVKYFYF 8 Unmodified _AEVKYFYF_ 0 0 0 nc|ENSG00000165181|Q5VXU9-3|SHOC1 nc|ENSG00000165181|Q5VXU9-3|SHOC1 nc|ENSG00000165181|Q5VXU9-3|SHOC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2710571289062 2 533.765843 1065.51713 -0.018009 -9.6127E-06 1.3278 0.00070873 1.3098 0.00069912 533.7665681449188 18.552 0.69571 17.226 16.811 17.506 -1.3251 29 19 2 0 0 0 0.97174 1 2812 2812 12.532 3.1841 1 1157900 2381 12429 1265 1267 2712 2712 -0.013004468170265682 AEVKYFYF 8 Unmodified _AEVKYFYF_ 0 0 0 nc|ENSG00000165181|Q5VXU9-3|SHOC1 nc|ENSG00000165181|Q5VXU9-3|SHOC1 nc|ENSG00000165181|Q5VXU9-3|SHOC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2778930664062 2 533.765843 1065.51713 -1.0712 -0.00057174 1.7209 0.00091856 0.64975 0.00034682 533.7666690494289 18.73 0.66926 17.095 16.76 17.429 -1.6351 39 18 3 0 0 0 1.0197 1 2844 2844 7.9102 2.6795 1 721840 2382 12429 1265 1267 2713 2713 -0.013004468170265682 AEVLHPVVP 9 Unmodified _AEVLHPVVP_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2364807128906 2 480.779285 959.544017 -0.051015 -2.4527E-05 0.60016 0.00028854 0.54915 0.00026402 480.77954597833053 96.68 0.45132 96.68 96.354 96.805 0 15 12 2 0 0 0 0.71527 1 18938 18938 19.257 3.4098 1 1137500 2383 6721 1266 1268 2714 2714 0.06262661794187352 AEVLHPVVP 9 Unmodified _AEVLHPVVP_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.779285 959.544017 0.31034 0.00014921 0.13844 6.6557E-05 0.44878 0.00021576 480.77922710909934 100.71 0.48005 96.413 96.156 96.636 -4.297 -0.071827 -9.3078E-05 NaN 19.257 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1420600 2384 6721 1266 1268 0.06262661794187352 AEVLHPVVP 9 Unmodified _AEVLHPVVP_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.779285 959.544017 0.26384 0.00012685 -0.22382 -0.00010761 0.040025 1.9243E-05 480.7791092355916 100.41 0.50832 96.417 96.21 96.718 -3.9895 -0.067588 -0.0004414 NaN 19.257 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1134900 2385 6721 1266 1268 0.06262661794187352 AEVLKRSQ 8 Unmodified _AEVLKRSQ_ 0 0 0 REV__ENST00000464603.1_1_2:242625182-242626171:-|nuORF REV__ENST00000464603.1_1_2:242625182-242626171:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.247802734375 2 465.771991 929.529429 -0.0010212 -4.7566E-07 -0.12472 -5.809E-05 -0.12574 -5.8566E-05 465.7719245982851 19.088 0.45142 17.691 17.467 17.919 -1.3966 35 12 4 0 0 0 0.97173 1 3096 3096 18.135 3.2967 1 24023000 + 2386 18019 1267 1269 2715 2715 0.061845896460340555 AEVLMGNVP 9 Unmodified _AEVLMGNVP_ 0 0 0 nc|ENSG00000130244|Q17RN3-2|FAM98C nc|ENSG00000130244|Q17RN3-2|FAM98C nc|ENSG00000130244|Q17RN3-2|FAM98C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24188232421875 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 64.19 1 60.774 60.274 61.274 -3.4158 0 0 0 0.19674 1 12005 12005 0.40827 0 1 2387 12319 1268 1270 2716 2716 0.0017073627144554848 AEVLQKLIS 9 Unmodified _AEVLQKLIS_ 0 0 0 ENSG00000104112|ENST00000220478|SCG3 ENSG00000104112|ENST00000220478|SCG3 ENSG00000104112|ENST00000220478|SCG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 500.80267333984375 2 500.8055 999.596446 0.18885 9.4579E-05 -0.17493 -8.7605E-05 0.013925 6.9739E-06 500.8055367175987 120.09 0.70139 120.09 119.65 120.35 0 29 19 2 0 0 0 0.13832 1 23588 23588 2.6312 1.4164 1 1917300 2388 2218 1269 1271 2717 2717 0.09663200137140393 AEVLQQLGA 9 Unmodified _AEVLQQLGA_ 0 0 0 RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2493896484375 2 464.758549 927.502546 -0.23281 -0.0001082 -0.31938 -0.00014844 -0.5522 -0.00025664 464.7584600241275 104.21 0.50955 99.991 99.621 100.13 -4.2183 24 14 2 0 0 0 0.2219 2 20513 20461;20513 36.127 8.4982 1 1281900 2389 1202 1270 1272 2718;2719 2719 0.03589481034839537 AEVLQQLGA 9 Unmodified _AEVLQQLGA_ 0 0 0 RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2571716308594 2 464.758549 927.502546 0.69801 0.00032441 -1.0038 -0.00046654 -0.30581 -0.00014213 464.7580459214707 104.14 0.50295 100.09 99.802 100.31 -4.0543 16 13 2 0 0 0 0.73268 1 20065 20065 24.021 19.265 1 1187700 2390 1202 1270 1272 2720 2720 0.03589481034839537 AEVLQQLGA 9 Unmodified _AEVLQQLGA_ 0 0 0 RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.758549 927.502546 0.12647 5.8776E-05 -0.54388 -0.00025277 -0.41741 -0.00019399 464.75822836758874 104.34 0.5217 99.989 99.762 100.28 -4.346 -0.033284 7.3402E-05 NaN 36.127 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1440300 2391 1202 1270 1272 0.03589481034839537 AEVMRMGQ 8 Unmodified _AEVMRMGQ_ 0 0 0 REV__ENST00000261388.7_2_16:21170028-21172370:+|nuORF REV__ENST00000261388.7_2_16:21170028-21172370:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5319519042969 2 461.21768 920.420807 -0.043287 -1.9965E-05 0.76877 0.00035457 0.72548 0.00033461 461.2179695635611 57.565 1.0466 57.565 57.022 58.068 0 66 29 3 0 0 0 0.9455 1 11083 11083 23.148 0 1 12170000 + 2392 20173 1271 1273 2721 2721 -0.04258660920231705 AEVMRMGQ 8 Unmodified _AEVMRMGQ_ 0 0 0 REV__ENST00000261388.7_2_16:21170028-21172370:+|nuORF REV__ENST00000261388.7_2_16:21170028-21172370:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.21768 920.420807 -0.081688 -3.7676E-05 0.8905 0.00041072 0.80882 0.00037304 461.2180304625818 60.586 0.92874 57.653 57.135 58.064 -2.9333 0.046779 0.00015539 NaN 23.148 59 26 3 NaN NaN NaN NaN 0 NaN NaN 0 12830000 + 2393 20173 1271 1273 -0.04258660920231705 AEVMRMGQ 8 Unmodified _AEVMRMGQ_ 0 0 0 REV__ENST00000261388.7_2_16:21170028-21172370:+|nuORF REV__ENST00000261388.7_2_16:21170028-21172370:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.21768 920.420807 0.046021 2.1226E-05 0.67556 0.00031158 0.72158 0.00033281 461.217943750346 60.936 1.047 57.566 57.065 58.112 -3.3694 -0.039946 -4.2879E-05 NaN 23.148 78 29 4 NaN NaN NaN NaN 0 NaN NaN 0 17987000 + 2394 20173 1271 1273 -0.04258660920231705 AEVMRMGQ 8 Unmodified _AEVMRMGQ_ 0 0 0 REV__ENST00000261388.7_2_16:21170028-21172370:+|nuORF REV__ENST00000261388.7_2_16:21170028-21172370:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.21768 920.420807 0.16643 7.676E-05 0.56011 0.00025833 0.72654 0.00033509 461.217862877532 60.864 0.98496 57.64 57.134 58.119 -3.2237 0.034337 -0.00014938 NaN 23.148 69 27 4 NaN NaN NaN NaN 0 NaN NaN 0 11066000 + 2395 20173 1271 1273 -0.04258660920231705 AEVNASPPK 9 Unmodified _AEVNASPPK_ 0 0 0 MFN2|p.L29P|1|0.1|ENSG00000116688|chr1:11989254-11989254|T/C|missense_variant MFN2|p.L29P|1|0.1|ENSG00000116688|chr1:11989254-11989254|T/C|missense_variant MFN2|p.L29P|1|0.1|ENSG00000116688|chr1:11989254-11989254|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23895263671875 2 456.742899 911.471246 0.31788 0.00014519 -0.3864 -0.00017648 -0.068518 -3.1295E-05 456.7427911843601 30.68 2.458 28.563 27.701 30.159 -2.1167 219 69 5 0 0 0 0.55539 1 5676 5676 16.149 2.2431 1 172310000 2396 12136 1272 1274 2722 2722 0.011969080007588673 AEVNQVKEQ 9 Unmodified _AEVNQVKEQ_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6878051757812 2 522.769645 1043.52474 0.87076 0.00045521 0.16075 8.4036E-05 1.0315 0.00053924 522.7690354314287 24.94 0.61907 23.291 22.926 23.545 -1.6482 37 17 4 0 0 0 0.64382 1 4386 4386 10.074 1.3285 1 1457300 2397 3536 1273 1275 2723 2723 0.004716607126283634 AEVPPASPPP 10 Unmodified _AEVPPASPPP_ 0 0 0 REV__ENST00000489363.5_2_4:1685574-1685811:-|nuORF REV__ENST00000489363.5_2_4:1685574-1685811:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25384521484375 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 74.289 1 74.289 73.789 74.789 0 0 0 0 0.22569 1 14422 14422 15.847 3.3156 1 + 2398 22288 1274 1276 2724 2724 0.009820786605587273 AEVPPASPPP 10 Unmodified _AEVPPASPPP_ 0 0 0 REV__ENST00000489363.5_2_4:1685574-1685811:-|nuORF REV__ENST00000489363.5_2_4:1685574-1685811:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2542419433594 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 77.671 1 73.904 73.404 74.404 -3.7664 0 0 0 0.22576 1 14717 14717 14.838 0.25658 1 + 2399 22288 1274 1276 2725 2725 0.009820786605587273 AEVPPASPPP 10 Unmodified _AEVPPASPPP_ 0 0 0 REV__ENST00000489363.5_2_4:1685574-1685811:-|nuORF REV__ENST00000489363.5_2_4:1685574-1685811:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25408935546875 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 77.835 1 74.176 73.676 74.676 -3.6588 0 0 0 0.22576 1 14825 14825 14.838 3.198 1 + 2400 22288 1274 1276 2726 2726 0.009820786605587273 AEVQGMQEA 9 Unmodified _AEVQGMQEA_ 0 0 0 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 963.4288330078125 1 962.424772 961.417496 0.44261 0.00042598 -0.020017 -1.9264E-05 0.4226 0.00040672 962.4244170044242 35.498 0.56111 33.221 32.964 33.525 -2.2766 22 15 2 0 0 0 0.27986 1 6236 6236 32.786 0 1 702830 2401 1647 1275 1277 2727 2727 -0.06475632493265948 AEVQGMQEA 9 Unmodified _AEVQGMQEA_ 0 0 0 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 962.424772 961.417496 -0.27493 -0.0002646 1.0114 0.00097344 0.73652 0.00070885 962.4254299441876 35.562 0.39719 33.168 32.915 33.312 -2.3938 -0.044786 0.00092391 NaN 32.786 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 706620 2402 1647 1275 1277 -0.06475632493265948 AEVQGMQEA 9 Unmodified _AEVQGMQEA_ 0 0 0 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 962.424772 961.417496 0.38683 0.0003723 -0.11799 -0.00011356 0.26885 0.00025874 962.4248019069414 35.502 0.44669 33.249 33.055 33.501 -2.2527 0.036346 -0.00016309 NaN 32.786 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 785060 2403 1647 1275 1277 -0.06475632493265948 AEVQRESP 8 Unmodified _AEVQRESP_ 0 0 0 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.230224609375 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 34.944 1 34.944 34.444 35.444 0 0 0 0 0.22674 1 6407 6407 1.7423 0.52744 1 2404 7893 1276 1278 2728 2728 -0.0148856652166387 AEVQRIRNR 9 Unmodified _AEVQRIRNR_ 0 0 0 REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1 REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2230529785156 3 381.223139 1140.64759 -0.87945 -0.00033527 0.6295 0.00023998 -0.24995 -9.5286E-05 381.2234607730592 14.35 0.17404 13.236 13.123 13.297 -1.1142 10 4 3 0 0 0 0.45059 1 2144 2144 22.658 1.7869 1 631650 + 2405 16093 1277 1279 2729 2729 0.0828896195453126 AEVQRIRNR 9 Unmodified _AEVQRIRNR_ 0 0 0 REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1 REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2231750488281 3 381.223139 1140.64759 -2.2817 -0.00086983 2.1227 0.00080924 -0.15894 -6.0591E-05 381.2239994625412 14.369 0.18019 13.159 13.066 13.246 -1.2106 9 4 3 0 0 0 0.48707 1 1899 1899 20.415 5.1661 1 287990 + 2406 16093 1277 1279 2730 2730 0.0828896195453126 AEVQRIRNR 9 Unmodified _AEVQRIRNR_ 0 0 0 REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1 REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 381.223139 1140.64759 -0.87945 -0.00033527 0.6295 0.00023998 -0.24995 -9.5286E-05 381.2234607730592 14.35 0.17404 13.236 13.123 13.297 -1.1142 -0.092056 -0.0005687 NaN 22.658 10 4 3 NaN NaN NaN NaN 0 NaN NaN 0 631650 + 2407 16093 1277 1279 0.0828896195453126 AEVQRIRNR 9 Unmodified _AEVQRIRNR_ 0 0 0 REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1 REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 381.223139 1140.64759 -2.2817 -0.00086983 2.1227 0.00080924 -0.15894 -6.0591E-05 381.2239994625412 14.369 0.18019 13.159 13.066 13.246 -1.2106 -0.16932 0.0011391 NaN 22.658 9 4 3 NaN NaN NaN NaN 0 NaN NaN 0 287990 + 2408 16093 1277 1279 0.0828896195453126 AEVQYYYF 8 Unmodified _AEVQYYYF_ 0 0 0 REV__ENSG00000007171|ENST00000313735|NOS2 REV__ENSG00000007171|ENST00000313735|NOS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.270751953125 2 541.745108 1081.47566 0.41372 0.00022413 0.14512 7.8619E-05 0.55884 0.00030275 542.2465372934433 69.753 0.55625 66.173 65.791 66.347 -3.5798 20 15 2 0 0 0 0.81042 1 13141 13141 16.942 0 1 768050 + 2409 13883 1278 1280 2731 2731 -0.06181627576347637 AEVRCLQP 8 Unmodified _AEVRCLQP_ 0 0 0 ENSG00000181036|ENST00000368106|FCRL6 ENSG00000181036|ENST00000368106|FCRL6 ENSG00000181036|ENST00000368106|FCRL6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2381896972656 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 58.352 1 58.352 57.852 58.852 0 0 0 0 0.21452 1 11165 11165 13.508 0.97634 1 2410 6709 1279 1281 2732 2732 0.003732718485366604 AEVRCLQP 8 Unmodified _AEVRCLQP_ 0 0 0 ENSG00000181036|ENST00000368106|FCRL6 ENSG00000181036|ENST00000368106|FCRL6 ENSG00000181036|ENST00000368106|FCRL6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22393798828125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 82.245 1 78.688 78.188 79.188 -3.557 0 0 0 0.10704 1 16072 16072 6.3914 0 1 2411 6709 1279 1281 2733 2733 0.003732718485366604 AEVRGPEPQP 10 Unmodified _AEVRGPEPQP_ 0 0 0 REV__ENST00000465172.5_1_3:141595540-141640837:+|nuORF REV__ENST00000465172.5_1_3:141595540-141640837:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2792358398438 2 540.277638 1078.54072 0.3758 0.00020304 -0.54646 -0.00029524 -0.17065 -9.22E-05 540.2773606746955 31.949 0.52534 29.923 29.623 30.148 -2.0264 26 14 3 0 0 0 0.49448 1 5531 5531 0.26539 0 1 1583700 + 2412 21946 1280 1282 2734 2734 0.004593669495079666 AEVRIGPM 8 Unmodified _AEVRIGPM_ 0 0 0 nc|ENSG00000284762|O95263-2|PDE8B;nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B;ENSG00000113231|ENST00000264917|PDE8B nc|ENSG00000284762|O95263-2|PDE8B nc|ENSG00000284762|O95263-2|PDE8B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2252197265625 2 436.736563 871.458573 0.98397 0.00042974 -1.8098 -0.0007904 -0.82582 -0.00036067 436.73594274302087 26.299 0.40764 24.517 24.248 24.655 -1.7821 16 11 2 0 0 0 8448 1 4632 4632 0.12286 0 1 272570 2413 2729 1281 1283 2735 2735 0.017701733368767236 AEVRKKRVLD 10 Unmodified _AEVRKKRVLD_ 0 0 0 REV__nc|ENSG00000128872|Q9NZR1-2|TMOD2 REV__nc|ENSG00000128872|Q9NZR1-2|TMOD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3000183105469 3 405.250695 1212.73025 NaN NaN NaN NaN NaN NaN NaN 44.189 1 41.399 40.899 41.899 -2.79 0 0 0 0.22588 1 8298 8298 1.7423 0.52744 1 + 2414 15937 1282 1284 2736 2736 0.13239858962697326 AEVRLISDY 9 Unmodified _AEVRLISDY_ 0 0 0 REV__CLSTN1|p.N221Tfs*5|2|0.36|ENSG00000171603|chr1:9749901-9749901|T/-|frameshift_variant REV__CLSTN1|p.N221Tfs*5|2|0.36|ENSG00000171603|chr1:9749901-9749901|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2847900390625 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 109.62 1 109.62 109.12 110.12 0 0 0 0 0.23277 1 21554 21554 13.906 2.2658 1 + 2415 13452 1283 1285 2737 2737 0.020531352350417365 AEVRQLTL 8 Unmodified _AEVRQLTL_ 0 0 0 ENSG00000144036|ENST00000272427|EXOC6B ENSG00000144036|ENST00000272427|EXOC6B ENSG00000144036|ENST00000272427|EXOC6B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2591552734375 2 465.274367 928.53418 NaN NaN NaN NaN NaN NaN NaN 88.259 1 88.259 87.759 88.759 0 0 0 0 0.17344 1 17226 17226 34.102 0 1 2416 4540 1284 1286 2738 2738 0.06705473788792915 AEVRRHEVA 9 Unmodified _AEVRRHEVA_ 0 0 0 nc|ENSG00000135439|Q99490-2|AGAP2 nc|ENSG00000135439|Q99490-2|AGAP2 nc|ENSG00000135439|Q99490-2|AGAP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2700805664062 2 533.791247 1065.56794 -0.018673 -9.9674E-06 0.042636 2.2759E-05 0.023963 1.2791E-05 533.7914569291504 12.736 0.10454 12.736 12.649 12.753 0 4 2 2 0 0 0 0.64253 1 1797 1797 2.4985 1.5362 1 562390 2417 12339 1285 1287 2739 2739 0.037778952805638255 AEVRVCAAQP 10 Unmodified _AEVRVCAAQP_ 0 0 0 ENST00000369096.8_1_6:106534297-106536103:+|nuORF ENST00000369096.8_1_6:106534297-106536103:+|nuORF ENST00000369096.8_1_6:106534297-106536103:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2666625976562 2 522.268758 1042.52296 0.14242 7.4379E-05 0.12801 6.6858E-05 0.27043 0.00014124 522.2685726963626 18.087 0.42372 18.087 17.878 18.302 0 23 11 3 0 0 0 0.6817 1 2870 2870 13.042 1.4022 1 3962000 2418 9109 1286 1288 2740 2740 0.0034032842299893673 AEVRYNPA 8 Unmodified _AEVRYNPA_ 0 0 0 ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A;ATP7A|p.I537M|1|0.3|ENSG00000165240|chrX:78003140-78003140|A/G|missense_variant;ATP7A|p.C661Lfs*24|1|0.09|ENSG00000165240|chrX:78011476-78011477|-/T|frameshift_variant ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23553466796875 2 460.235242 918.45593 -0.080304 -3.6959E-05 0.34312 0.00015792 0.26282 0.00012096 460.23538480978965 44.307 0.83736 41.56 41.08 41.917 -2.7475 41 23 2 0 0 0 0.58432 1 8045 8045 23.148 1.4018 1 1502300 2419 275 1287 1289 2741 2741 -0.006559587964375169 AEVSPGEVGL 10 Unmodified _AEVSPGEVGL_ 0 0 0 nc|ENSG00000013573|Q96FC9|DDX11 nc|ENSG00000013573|Q96FC9|DDX11 nc|ENSG00000013573|Q96FC9|DDX11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73760986328125 2 479.248015 956.481476 -0.062025 -2.9726E-05 0.39086 0.00018732 0.32883 0.00015759 479.2481698982782 53.147 1.6186 50.052 49.378 50.997 -3.0954 87 46 2 0 0 0 0.70987 1 9738 9738 30.637 1.555 1 2840900 2420 12209 1288 1290 2742 2742 0.0014947093535511158 AEVSPTPSQ 9 Unmodified _AEVSPTPSQ_ 0 0 0 REV__nc|ENSG00000155324|Q96HH9-3|GRAMD2B REV__nc|ENSG00000155324|Q96HH9-3|GRAMD2B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2221374511719 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 62.401 1 59.44 58.94 59.94 -2.9614 0 0 0 0.23508 1 12040 12040 11.64 2.2929 1 + 2421 24108 1289 1291 2743 2743 -0.026113886158100286 AEVSSGCTY 9 Unmodified _AEVSSGCTY_ 0 0 0 REV__NLRC4|p.N539Tfs*8|1|0.29|ENSG00000091106|chr2:32250248-32250248|T/-|frameshift_variant REV__NLRC4|p.N539Tfs*8|1|0.29|ENSG00000091106|chr2:32250248-32250248|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2287902832031 2 458.689475 915.364398 -0.21374 -9.8039E-05 1.2702 0.00058262 1.0565 0.00048459 458.69001486293587 103.47 0.77749 99.254 98.978 99.756 -4.2183 32 22 2 0 0 0 0.42289 1 20372 20372 32.305 10.559 1 1603400 + 2422 14562 1290 1292 2744 2744 -0.09667010275927623 AEVSSGCTY 9 Unmodified _AEVSSGCTY_ 0 0 0 REV__NLRC4|p.N539Tfs*8|1|0.29|ENSG00000091106|chr2:32250248-32250248|T/-|frameshift_variant REV__NLRC4|p.N539Tfs*8|1|0.29|ENSG00000091106|chr2:32250248-32250248|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2286376953125 2 458.689475 915.364398 0.62184 0.00028523 0.43936 0.00020153 1.0612 0.00048676 458.68965883868384 103.37 0.73365 99.318 99.069 99.802 -4.0543 36 20 2 0 0 0 0.54076 1 19918 19918 20.454 0 1 2610200 + 2423 14562 1290 1292 2745 2745 -0.09667010275927623 AEVSYIKTKL 10 Unmodified _AEVSYIKTKL_ 0 0 0 REV__ENSG00000118246|ENST00000402774|FASTKD2 REV__ENSG00000118246|ENST00000402774|FASTKD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3348388671875 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 55.197 1 52.059 51.559 52.559 -3.1377 0 0 0 0.22588 1 10241 10241 10.074 2.1638 1 + 2424 15546 1291 1293 2746 2746 0.09047140854363533 AEVTFDCGHC 10 Unmodified _AEVTFDCGHC_ 0 0 0 REV__LDB3|p.P675T|1|0.36|ENSG00000122367|chr10:86726181-86726181|C/A|missense_variant REV__LDB3|p.P675T|1|0.36|ENSG00000122367|chr10:86726181-86726181|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2716674804688 2 541.207509 1080.40047 0.4152 0.00022471 0.58259 0.0003153 0.99779 0.00054001 541.2078531096332 68.628 0.7905 65.237 64.843 65.633 -3.3903 42 22 2 0 0 0 0.79872 1 12900 12900 19.257 2.3147 1 4822700 + 2425 23793 1292 1294 2747 2747 -0.13651876370727223 AEVTIQNV 8 Unmodified _AEVTIQNV_ 0 0 0 nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21649169921875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 81.512 1 77.824 77.324 78.324 -3.6879 0 0 0 0.21171 1 15535 15535 15.847 2.8047 1 2426 3253 1293 1295 2748 2748 0.019015056264720442 AEVTLAKVS 9 Unmodified _AEVTLAKVS_ 0 0 0 ENST00000463408.1_1_3:123304534-123348506:+|nuORF ENST00000463408.1_1_3:123304534-123348506:+|nuORF ENST00000463408.1_1_3:123304534-123348506:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24365234375 2 459.26875 916.522947 0.66743 0.00030653 0.39367 0.0001808 1.0611 0.00048733 459.2686190367868 79.082 1.5663 79.082 78.191 79.758 0 74 44 3 0 0 0 0.28819 1 15308 15308 32.305 9.1571 1 4193700 2427 10099 1294 1296 2749 2749 0.06134651694662807 AEVTLAKVS 9 Unmodified _AEVTLAKVS_ 0 0 0 ENST00000463408.1_1_3:123304534-123348506:+|nuORF ENST00000463408.1_1_3:123304534-123348506:+|nuORF ENST00000463408.1_1_3:123304534-123348506:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.26875 916.522947 -0.12749 -5.8551E-05 0.88706 0.0004074 0.75957 0.00034885 459.26893207019185 82.582 0.76206 78.883 78.416 79.178 -3.6985 -0.099473 0.00010674 NaN 32.305 55 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5253100 2428 10099 1294 1296 0.06134651694662807 AEVTRAVSE 9 Unmodified _AEVTRAVSE_ 0 0 0 nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7731018066406 2 481.251089 960.487624 0.040863 1.9665E-05 1.5217 0.00073231 1.5625 0.00075198 481.2518469026552 24.939 0.33745 24.939 24.781 25.118 0 14 9 2 0 0 0 0.25183 1 4304 4304 34.402 2.0962 1 559130 2429 3421 1295 1297 2750 2750 0.005799891668516466 AEVTRAVSE 9 Unmodified _AEVTRAVSE_ 0 0 0 nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2533264160156 2 481.251089 960.487624 1.1091 0.00053375 -0.90467 -0.00043537 0.20443 9.8383E-05 481.2505970223823 26.544 0.37486 24.762 24.552 24.926 -1.7821 14 10 2 0 0 0 0.36931 1 4664 4664 27.629 0 1 929680 2430 3421 1295 1297 2751 2751 0.005799891668516466 AEVTRAVSE 9 Unmodified _AEVTRAVSE_ 0 0 0 nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2527770996094 2 481.251089 960.487624 0.17368 8.3586E-05 -0.022723 -1.0935E-05 0.15096 7.265E-05 481.25107001108034 26.451 0.34968 24.816 24.616 24.966 -1.6347 17 9 2 0 0 0 0.25183 1 4375 4375 34.402 2.0962 1 861280 2431 3421 1295 1297 2752 2752 0.005799891668516466 AEVTREGFR 9 Unmodified _AEVTREGFR_ 0 0 0 PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant;nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;ENSG00000130175|ENST00000677123|PRKCSH PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2789306640625 2 532.777805 1063.54106 0.37252 0.00019847 -0.23758 -0.00012658 0.13494 7.1893E-05 532.7777059891014 23.884 1.0017 22.35 21.883 22.884 -1.5342 83 28 4 0 0 0 0.5059 1 3916 3916 19.257 0 1 19222000 2432 3590 1296 1298 2753 2753 0.011827866693693068 AEVTSSLVN 9 Unmodified _AEVTSSLVN_ 0 0 0 REV__ENST00000299980.8_2_16:71766487-71766874:-|nuORF REV__ENST00000299980.8_2_16:71766487-71766874:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2284851074219 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 74.078 1 70.713 70.213 71.213 -3.3643 0 0 0 0.22621 1 14448 14448 15.847 0 1 + 2433 20394 1297 1299 2754 2754 0.0033318441828669165 AEVTSTLEA 9 Unmodified _AEVTSTLEA_ 0 0 0 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2402648925781 2 460.732197 919.449842 0.16443 7.5756E-05 -0.33055 -0.00015229 -0.16612 -7.6538E-05 460.73202480246044 60.786 0.8773 57.562 57.208 58.085 -3.2237 67 24 4 0 0 0 0.69192 1 11412 11412 26.884 11.036 1 12080000 2434 3066 1298 1300 2755 2755 -0.013105218186183265 AEVTSTLEA 9 Unmodified _AEVTSTLEA_ 0 0 0 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.732197 919.449842 -0.088461 -4.0757E-05 0.041014 1.8896E-05 -0.047448 -2.1861E-05 460.73218168821745 60.393 0.79058 57.46 57.135 57.926 -2.9333 -0.079114 0.0001426 NaN 32.305 61 22 3 NaN NaN NaN NaN 0 NaN NaN 0 17988000 2435 3066 1298 1300 -0.013105218186183265 AEVTSTLEA 9 Unmodified _AEVTSTLEA_ 0 0 0 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.732197 919.449842 0.044212 2.037E-05 -0.15087 -6.951E-05 -0.10666 -4.914E-05 460.73210976815466 60.865 0.83274 57.495 57.134 57.967 -3.3694 -0.043612 -3.4211E-05 NaN 32.305 61 23 4 NaN NaN NaN NaN 0 NaN NaN 0 14789000 2436 3066 1298 1300 -0.013105218186183265 AEVVDEIAA 9 Unmodified _AEVVDEIAA_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.239013671875 2 458.73474 915.454927 -0.14048 -6.4443E-05 -0.03652 -1.6753E-05 -0.177 -8.1196E-05 458.73478906399174 85.744 0.43385 82.08 81.819 82.252 -3.6641 16 11 2 0 0 0 0.69192 1 16771 16771 20.454 14.248 1 895020 2437 6789 1299 1301 2756 2756 -0.006182179560028089 AEVVPFNRY 9 Unmodified _AEVVPFNRY_ 0 0 0 REV__ENSG00000118600|ENST00000261234|RXYLT1 REV__ENSG00000118600|ENST00000261234|RXYLT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7827758789062 2 547.785099 1093.55564 0.27627 0.00015134 -2.3768 -0.001302 -2.1006 -0.0011507 547.7828877591268 32.683 0.48864 30.536 30.306 30.795 -2.1468 24 13 3 0 0 0 0.68435 1 5711 5711 7.2892 0 1 930060 + 2438 15559 1300 1302 2757 2757 0.012608588175226032 AEVVYSWTL 9 Unmodified _AEVVYSWTL_ 0 0 0 ENSG00000011677|ENST00000370314|GABRA3 ENSG00000011677|ENST00000370314|GABRA3 ENSG00000011677|ENST00000370314|GABRA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2635498046875 2 534.274032 1066.53351 -0.0062565 -3.3427E-06 -2.0337 -0.0010865 -2.0399 -0.0010899 534.2729150792455 50.912 0.73573 47.861 47.47 48.206 -3.0517 35 15 4 0 0 0 0.54354 1 9388 9388 16.942 0.79319 1 3074400 2439 1082 1301 1303 2758 2758 0.0029063434908493946 AEVWAFRY 8 Unmodified _AEVWAFRY_ 0 0 0 REV__ENST00000523426.1_1_8:54669186-54714423:-|nuORF REV__ENST00000523426.1_1_8:54669186-54714423:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 521.1536254882812 2 521.261259 1040.50797 -0.5053 -0.00026339 -0.15747 -8.2081E-05 -0.66276 -0.00034547 521.2613135110196 35.291 0.38805 32.897 32.599 32.987 -2.3938 14 10 2 0 0 0 1.0249 1 6448 6448 5.7604 0 1 1142400 + 2440 14059 1302 1304 2759 2759 -0.010667953826896337 AEVWAFRY 8 Unmodified _AEVWAFRY_ 0 0 0 REV__ENST00000523426.1_1_8:54669186-54714423:-|nuORF REV__ENST00000523426.1_1_8:54669186-54714423:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.261259 1040.50797 0.21565 0.00011241 -0.85617 -0.00044629 -0.64052 -0.00033388 521.2607288206685 32.938 0.41967 32.938 32.746 33.165 0 0.07255 -0.00026437 NaN 5.7604 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1189700 + 2441 14059 1302 1304 -0.010667953826896337 AEVWAFRY 8 Unmodified _AEVWAFRY_ 0 0 0 REV__ENST00000523426.1_1_8:54669186-54714423:-|nuORF REV__ENST00000523426.1_1_8:54669186-54714423:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.261259 1040.50797 -0.54553 -0.00028436 -0.50751 -0.00026455 -1.053 -0.00054891 521.2609524699943 35.013 0.37943 32.76 32.606 32.985 -2.2527 -0.10487 9.9112E-05 NaN 5.7604 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 880720 + 2442 14059 1302 1304 -0.010667953826896337 AEVWQLLA 8 Unmodified _AEVWQLLA_ 0 0 0 nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L nc|ENSG00000152061|Q5R372-2|RABGAP1L nc|ENSG00000152061|Q5R372-2|RABGAP1L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25909423828125 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 53.94 1 50.805 50.305 51.305 -3.1352 0 0 0 0.21486 1 9938 9938 10.824 0.75 1 2443 4899 1303 1305 2760 2760 0.03470686385810495 AEVWTSRQA 9 Unmodified _AEVWTSRQA_ 0 0 0 SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;ENST00000367538.1_1_1:183441704-183485127:+|nuORF SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6924438476562 2 524.26453 1046.51451 0.40732 0.00021354 -0.6708 -0.00035168 -0.26349 -0.00013814 524.264269290299 42.761 0.49657 42.761 42.422 42.919 0 22 13 2 0 0 0 0.76263 1 8005 8005 22.658 8.752 1 1377700 2444 2943 1304 1306 2761 2761 -0.0068890222196387185 AEVWTSRQA 9 Unmodified _AEVWTSRQA_ 0 0 0 SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;ENST00000367538.1_1_1:183441704-183485127:+|nuORF SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7014770507812 2 524.26453 1046.51451 -0.1758 -9.2163E-05 0.74407 0.00039009 0.56827 0.00029792 524.2649397544932 45.74 0.37832 42.899 42.724 43.102 -2.8409 21 10 3 0 0 0 0.64397 1 8625 8625 24.991 12.459 1 1433400 2445 2943 1304 1306 2762 2762 -0.0068890222196387185 AEWAQKFLHEN 11 Unmodified _AEWAQKFLHEN_ 0 0 0 REV__NEB|p.Y1993F|1|0.14|ENSG00000183091|chr2:151659162-151659162|T/A|missense_variant REV__NEB|p.Y1993F|1|0.14|ENSG00000183091|chr2:151659162-151659162|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2250061035156 3 458.226326 1371.65715 NaN NaN NaN NaN NaN NaN NaN 56.225 1 53.036 52.536 53.536 -3.1895 0 0 0 0.22632 1 10416 10416 0.026206 0 1 + 2446 24350 1305 1307 2763 2763 -0.01381314550553725 AEWAQRELELQ 11 Unmodified _AEWAQRELELQ_ 0 0 0 REV__nc|ENSG00000141577|Q9UPN4-3|CEP131 REV__nc|ENSG00000141577|Q9UPN4-3|CEP131 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2332763671875 3 458.233369 1371.67828 NaN NaN NaN NaN NaN NaN NaN 33.466 1 33.466 32.966 33.966 0 0 0 0 0.22632 1 6109 6109 0.58532 0 1 + 2447 16643 1306 1308 2764 2764 0.007306507583052735 AEWARPSV 8 Unmodified _AEWARPSV_ 0 0 0 REV__ENST00000370664.3_1_10:99330520-99330748:+|nuORF REV__ENST00000370664.3_1_10:99330520-99330748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2381896972656 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 52.389 1 52.389 51.889 52.889 0 0 0 0 0.21486 1 9957 9957 12.532 1.4171 1 + 2448 20990 1307 1309 2765 2765 0.0003634506618936939 AEWARPSV 8 Unmodified _AEWARPSV_ 0 0 0 REV__ENST00000370664.3_1_10:99330520-99330748:+|nuORF REV__ENST00000370664.3_1_10:99330520-99330748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2244567871094 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 59.364 1 59.364 58.864 59.864 0 0 0 0 0.21171 1 11372 11372 15.847 6.4997 1 + 2449 20990 1307 1309 2766 2766 0.0003634506618936939 AEWARPSV 8 Unmodified _AEWARPSV_ 0 0 0 REV__ENST00000370664.3_1_10:99330520-99330748:+|nuORF REV__ENST00000370664.3_1_10:99330520-99330748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.239013671875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 82.338 1 82.338 81.838 82.838 0 0 0 0 0.20896 1 16041 16041 18.135 5.6034 1 + 2450 20990 1307 1309 2767 2767 0.0003634506618936939 AEWARPSV 8 Unmodified _AEWARPSV_ 0 0 0 REV__ENST00000370664.3_1_10:99330520-99330748:+|nuORF REV__ENST00000370664.3_1_10:99330520-99330748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.238037109375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 56.743 1 53.849 53.349 54.349 -2.8944 0 0 0 0.21486 1 10878 10878 9.3474 0 1 + 2451 20990 1307 1309 2768 2768 0.0003634506618936939 AEWARPSV 8 Unmodified _AEWARPSV_ 0 0 0 REV__ENST00000370664.3_1_10:99330520-99330748:+|nuORF REV__ENST00000370664.3_1_10:99330520-99330748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2275390625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 62.46 1 59.499 58.999 59.999 -2.9614 0 0 0 0.2343 1 12053 12053 0.063987 0.060607 1 + 2452 20990 1307 1309 2769 2769 0.0003634506618936939 AEWARPSV 8 Unmodified _AEWARPSV_ 0 0 0 REV__ENST00000370664.3_1_10:99330520-99330748:+|nuORF REV__ENST00000370664.3_1_10:99330520-99330748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23895263671875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 86.392 1 82.663 82.163 83.163 -3.7289 0 0 0 0.21486 1 16519 16519 12.532 3.1841 1 + 2453 20990 1307 1309 2770 2770 0.0003634506618936939 AEWCCVGLAN 10 Unmodified _AEWCCVGLAN_ 0 0 0 REV__ENST00000372683.1_1_1:41107422-41131088:-|nuORF REV__ENST00000372683.1_1_1:41107422-41131088:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2823486328125 2 533.228245 1064.44194 0.23158 0.00012348 1.0648 0.00056777 1.2964 0.00069125 533.2291733391364 89.913 0.21316 86.136 86.012 86.225 -3.7779 6 5 2 0 0 0 0.85223 1 17183 17183 13.042 2.2185 1 443490 + 2454 21031 1308 1310 2771 2771 -0.08770695611383417 AEWEVDPD 8 Unmodified _AEWEVDPD_ 0 0 0 ENSG00000177706|ENST00000313766|FAM20C;nc|ENSG00000177706|Q8IXL6-2|FAM20C;ENST00000515795.1_7:286228-299943:+|nuORF ENSG00000177706|ENST00000313766|FAM20C ENSG00000177706|ENST00000313766|FAM20C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2412414550781 2 480.700897 959.387241 -0.35303 -0.0001697 2.578 0.0012392 2.225 0.0010695 480.7004545858442 68.377 0.32083 68.377 68.254 68.575 0 9 8 2 0 0 0 8448 1 13196 13196 0.62683 0.55356 1 699320 2455 6533 1309 1311 2772 2772 -0.09407667886807758 AEWKRQTIQ 9 Unmodified _AEWKRQTIQ_ 0 0 0 REV__ENST00000474381.1_1_6:31323854-31324663:-|nuORF REV__ENST00000474381.1_1_6:31323854-31324663:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.2119445800781 3 387.212128 1158.61456 NaN NaN NaN NaN NaN NaN NaN 64.867 1 64.867 64.367 65.367 0 0 0 0 0.23508 1 12492 12492 4.897 0.18109 1 + 2456 19760 1310 1312 2773 2773 0.04159335111853579 AEWLALIVPTC 11 Unmodified _AEWLALIVPTC_ 0 0 0 REV__ENST00000377705.5_1_1:6585202-6585712:-|nuORF REV__ENST00000377705.5_1_1:6585202-6585712:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 406.22137451171875 3 405.886253 1214.63693 -0.50666 -0.00020565 0.49777 0.00020204 -0.0088941 -3.61E-06 405.88632009018517 43.265 0.63283 40.659 40.413 41.046 -2.606 31 17 2 0 0 0 0.80759 1 7777 7777 2.6312 0.13275 1 2352900 + 2457 21104 1311 1313 2774 2774 0.038197984652697414 AEWLRDLY 8 Unmodified _AEWLRDLY_ 0 0 0 ENSG00000270765|ENST00000604641|GAS2L2;GAS2L2|p.R197Gfs*18|1|0.67|ENSG00000270765|chr17:35750116-35750116|G/-|frameshift_variant;nc|ENSG00000270765|Q8NHY3-2|GAS2L2;GAS2L2|p.V296Gfs*13|1|0.03|ENSG00000270765|chr17:35747211-35747214|CTTA/-|frameshift_variant ENSG00000270765|ENST00000604641|GAS2L2 ENSG00000270765|ENST00000604641|GAS2L2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27099609375 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 39.942 1 39.942 39.442 40.442 0 0 0 0 0.21486 1 7420 7420 5.7604 0 1 2458 8000 1312 1314 2775 2775 -0.0005883007379452465 AEWLTINAK 9 Unmodified _AEWLTINAK_ 0 0 0 REV__ENSG00000165091|ENST00000297784|TMC1 REV__ENSG00000165091|ENST00000297784|TMC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6788330078125 2 523.287474 1044.5604 0.076487 4.0025E-05 -0.94562 -0.00049483 -0.86913 -0.00045481 523.2874363316869 71.578 0.84182 71.578 71.214 72.056 0 78 23 5 0 0 0 0.19271 1 13881 13881 30.637 0 1 17846000 + 2459 17739 1313 1315 2776 2776 0.03989742960266085 AEWLYQLY 8 Unmodified _AEWLYQLY_ 0 0 0 REV__ENSG00000164142|ENST00000435205|FHIP1A REV__ENSG00000164142|ENST00000435205|FHIP1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7805786132812 2 543.26875 1084.52295 0.10522 5.7163E-05 -0.9436 -0.00051263 -0.83838 -0.00045547 543.268114357696 93.268 1.0117 93.268 92.783 93.794 0 49 28 2 0 0 0 0.49114 3 18195 18195;18223;18290 28.487 11.545 1 3204000 + 2460 17652 1314 1316 2777;2778;2779 2777 -0.015933483053231612 AEWLYQLY 8 Unmodified _AEWLYQLY_ 0 0 0 REV__ENSG00000164142|ENST00000435205|FHIP1A REV__ENSG00000164142|ENST00000435205|FHIP1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7698364257812 2 543.26875 1084.52295 0.26317 0.00014297 -1.1515 -0.00062557 -0.88831 -0.00048259 543.2678748701496 97.302 0.69933 93.204 92.873 93.572 -4.0978 44 19 3 0 0 0 0.49114 1 19129 19129 28.487 11.545 1 3160400 + 2461 17652 1314 1316 2780 2780 -0.015933483053231612 AEWLYQLY 8 Unmodified _AEWLYQLY_ 0 0 0 REV__ENSG00000164142|ENST00000435205|FHIP1A REV__ENSG00000164142|ENST00000435205|FHIP1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7850341796875 2 543.26875 1084.52295 0.17613 9.5687E-05 -0.97042 -0.0005272 -0.79429 -0.00043151 543.2679509430748 97.525 1.0294 93.291 92.818 93.847 -4.2348 69 29 3 0 0 0 0.49114 2 18657 18657;18694 28.487 10.114 1 3857200 + 2462 17652 1314 1316 2781;2782 2781 -0.015933483053231612 AEWLYQLY 8 Unmodified _AEWLYQLY_ 0 0 0 REV__ENSG00000164142|ENST00000435205|FHIP1A REV__ENSG00000164142|ENST00000435205|FHIP1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7823486328125 2 543.26875 1084.52295 0.082585 4.4866E-05 -0.84745 -0.00046039 -0.76487 -0.00041553 543.2680066788417 97.213 0.83319 93.293 92.987 93.821 -3.9194 51 23 3 0 0 0 0.49114 2 18658 18658;18667 28.487 9.1249 1 2631300 + 2463 17652 1314 1316 2783;2784 2783 -0.015933483053231612 AEWNKERLD 9 Unmodified _AEWNKERLD_ 0 0 0 REV__nc|ENSG00000126777|Q86UP2-3|KTN1 REV__nc|ENSG00000126777|Q86UP2-3|KTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7140197753906 3 387.528005 1159.56219 0.086288 3.3439E-05 -0.12228 -4.7386E-05 -0.035989 -1.3947E-05 387.5279408245649 60.996 0.62311 57.627 57.273 57.896 -3.3694 28 17 3 0 0 0 0.6109 1 11330 11330 1.2148 0 1 1328000 + 2464 15864 1315 1317 2785 2785 -0.011212480217636767 AEWNQLSYQR 10 Unmodified _AEWNQLSYQR_ 0 0 0 REV__nc|ENSG00000100983|P48637-2|GSS REV__nc|ENSG00000100983|P48637-2|GSS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.870361328125 3 432.210676 1293.6102 -0.0065182 -2.8172E-06 -0.35173 -0.00015202 -0.35825 -0.00015484 432.21054455640234 24.671 0.92945 23.137 22.609 23.538 -1.5342 36 26 2 0 0 0 0.91149 1 3948 3948 0 0 1 635850 + 2465 14752 1316 1318 2786 2786 -0.024861741017502936 AEWPSHVP 8 Unmodified _AEWPSHVP_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;ENST00000573536.1_1_17:3920391-3920838:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5354309082031 2 461.72451 921.434466 0.33106 0.00015286 -0.10798 -4.9858E-05 0.22308 0.000103 461.7244335098263 83.72 2.3791 83.72 82.636 85.015 0 142 67 3 0 0 0 0.07308 2 16371 16308;16371 70.716 47.567 1 4079000 2466 1503 1317 1319 2787;2788 2788 -0.029393438251531734 AEWPSHVP 8 Unmodified _AEWPSHVP_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;ENST00000573536.1_1_17:3920391-3920838:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5404052734375 2 461.72451 921.434466 0.28982 0.00013382 0.16324 7.537E-05 0.45306 0.00020919 461.7245094438309 87.893 2.8993 83.898 82.391 85.29 -3.9953 166 82 3 0 0 0 0.31517 1 16887 16887 36.044 5.8194 1 4040900 2467 1503 1317 1319 2789 2789 -0.029393438251531734 AEWPSHVP 8 Unmodified _AEWPSHVP_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;ENST00000573536.1_1_17:3920391-3920838:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5225524902344 2 461.72451 921.434466 0.14907 6.883E-05 0.16855 7.7825E-05 0.31763 0.00014666 461.7245475751895 87.521 2.8803 83.771 82.356 85.237 -3.7501 163 81 3 0 0 0 0.07308 2 16828 16583;16828 70.716 52.581 1 4381800 2468 1503 1317 1319 2790;2791 2791 -0.029393438251531734 AEWQPFYK 8 Unmodified _AEWQPFYK_ 0 0 0 REV__ENSG00000256713|ENST00000312403|PGA5 REV__ENSG00000256713|ENST00000312403|PGA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.07305908203125 3 356.843154 1067.50763 -1.5929 -0.00056843 1.5877 0.00056655 -0.0052651 -1.8788E-06 356.8448720431594 20.184 0.48615 18.549 18.295 18.781 -1.6351 34 13 4 0 0 0 1.0115 1 3083 3083 3.5965 1.098 1 1806800 + 2469 19739 1318 1320 2792 2792 -0.023422151025442872 AEWRHLWHIHG 11 Unmodified _AEWRHLWHIHG_ 0 0 0 ENST00000336695.4_1_20:34287595-34288899:+|nuORF ENST00000336695.4_1_20:34287595-34288899:+|nuORF ENST00000336695.4_1_20:34287595-34288899:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2453918457031 3 481.246055 1440.71634 NaN NaN NaN NaN NaN NaN NaN 51.025 1 47.98 47.48 48.48 -3.0453 0 0 0 0.22632 1 9359 9359 0.026206 0 1 2470 8810 1319 1321 2793 2793 0.01360626254268027 AEWSKLFEA 9 Unmodified _AEWSKLFEA_ 0 0 0 ENSG00000090060|ENST00000216277|PAPOLA;PAPOLB|p.K446Sfs*28|1|0.38|ENSG00000218823|chr7:4860474-4860474|T/-|frameshift_variant;ENSG00000218823|ENST00000404991|PAPOLB ENSG00000090060|ENST00000216277|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.283203125 2 540.771657 1079.52876 0.4448 0.00024053 0.39855 0.00021553 0.84335 0.00045606 541.2735108276055 151.17 0.67006 145.99 145.75 146.42 -5.1759 22 18 2 0 0 0 0.5685 1 29314 29314 15.248 15.248 1 3054600 2471 1777 1320 1322 2794 2794 -0.007822497936558648 AEWTGTKTPP 10 Unmodified _AEWTGTKTPP_ 0 0 0 REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7943725585938 2 544.274564 1086.53457 NaN NaN NaN NaN NaN NaN NaN 66.744 1 63.417 62.917 63.917 -3.3268 0 0 0 0.22576 1 12571 12571 14.838 0.93222 1 + 2472 15115 1321 1323 2795 2795 -0.005231512819818818 AEWVQTEL 8 Unmodified _AEWVQTEL_ 0 0 0 REV__nc|ENSG00000182979|Q13330-2|MTA1 REV__nc|ENSG00000182979|Q13330-2|MTA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27667236328125 2 488.242732 974.470912 0.17962 8.7697E-05 0.028582 1.3955E-05 0.2082 0.00010165 488.2426883844542 136.6 1.4597 136.6 136.06 137.52 0 130 41 5 0 0 0 0.69713 1 27070 27070 14.838 2.5976 1 147130000 + 2473 24202 1322 1324 2796 2796 -0.017345117191098325 AEWVQTEL 8 Unmodified _AEWVQTEL_ 0 0 0 REV__nc|ENSG00000182979|Q13330-2|MTA1 REV__nc|ENSG00000182979|Q13330-2|MTA1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 488.242732 974.470912 0.17962 8.7697E-05 0.028582 1.3955E-05 0.2082 0.00010165 488.2426883844542 136.6 1.4597 136.6 136.06 137.52 0 -0.19233 -5.3624E-05 NaN 14.838 130 41 5 NaN NaN NaN NaN 0 NaN NaN 0 147130000 + 2474 24202 1322 1324 -0.017345117191098325 AEWVQTEL 8 Unmodified _AEWVQTEL_ 0 0 0 REV__nc|ENSG00000182979|Q13330-2|MTA1 REV__nc|ENSG00000182979|Q13330-2|MTA1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 488.242732 974.470912 0.17813 8.6972E-05 0.042202 2.0605E-05 0.22034 0.00010758 488.2426906876221 141.45 1.4276 136.8 136.4 137.83 -4.6493 -0.00032612 -4.0324E-05 NaN 14.838 125 40 4 NaN NaN NaN NaN 0 NaN NaN 0 110900000 + 2475 24202 1322 1324 -0.017345117191098325 AEWVQTEL 8 Unmodified _AEWVQTEL_ 0 0 0 REV__nc|ENSG00000182979|Q13330-2|MTA1 REV__nc|ENSG00000182979|Q13330-2|MTA1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 488.242732 974.470912 0.22619 0.00011043 -0.020713 -1.0113E-05 0.20547 0.00010032 488.24265842534646 141.91 1.3821 136.92 136.27 137.65 -4.9877 0.12411 -0.00010176 NaN 14.838 130 39 4 NaN NaN NaN NaN 0 NaN NaN 0 173780000 + 2476 24202 1322 1324 -0.017345117191098325 AEWVQTEL 8 Unmodified _AEWVQTEL_ 0 0 0 REV__nc|ENSG00000182979|Q13330-2|MTA1 REV__nc|ENSG00000182979|Q13330-2|MTA1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 488.242732 974.470912 0.022982 1.1221E-05 0.24975 0.00012194 0.27274 0.00013316 488.242804937866 141.73 1.6589 136.87 136.22 137.88 -4.8678 0.068547 0.00016235 NaN 14.838 132 46 4 NaN NaN NaN NaN 0 NaN NaN 0 86821000 + 2477 24202 1322 1324 -0.017345117191098325 AEYAHLVQ 8 Unmodified _AEYAHLVQ_ 0 0 0 ENST00000477706.1_1_X:53458354-53459024:-|nuORF;nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10 ENST00000477706.1_1_X:53458354-53459024:-|nuORF ENST00000477706.1_1_X:53458354-53459024:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2514343261719 2 465.737617 929.460681 0.16056 7.4778E-05 0.48593 0.00022632 0.64649 0.00030109 465.73753471656545 64.389 0.60085 60.931 60.591 61.192 -3.4581 27 16 3 0 0 0 0.88646 1 12064 12064 0.68139 0 1 1025100 2478 1468 1323 1325 2797 2797 -0.0068707465366060205 AEYALKRQEA 10 Unmodified _AEYALKRQEA_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant;ENST00000572445.1_1_17:1564459-1565038:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2693481445312 2 589.811845 1177.60914 0.56728 0.00033459 -1.9989 -0.001179 -1.4317 -0.00084441 589.8100412365641 26.616 0.42468 24.981 24.822 25.247 -1.6347 20 11 3 0 0 0 0.74451 1 4399 4399 32.898 13.536 1 1651900 2479 6337 1324 1326 2798 2798 0.02743611529399459 AEYALKRQEA 10 Unmodified _AEYALKRQEA_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant;ENST00000572445.1_1_17:1564459-1565038:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.250732421875 2 589.811845 1177.60914 0.093375 5.5074E-05 0.17576 0.00010366 0.26913 0.00015874 589.8120025618471 26.828 0.311 24.906 24.709 25.02 -1.9222 17 8 3 0 0 0 0.14025 1 4458 4458 49.742 16.956 1 1203600 2480 6337 1324 1326 2799 2799 0.02743611529399459 AEYALKRQEA 10 Unmodified _AEYALKRQEA_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant;ENST00000572445.1_1_17:1564459-1565038:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 589.811845 1177.60914 0.39071 0.00023045 1.1665 0.000688 1.5572 0.00091845 589.8123660537292 24.862 0.26616 24.862 24.647 24.913 0 -0.022002 0.00062772 NaN 49.742 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 682020 2481 6337 1324 1326 0.02743611529399459 AEYALKRQEA 10 Unmodified _AEYALKRQEA_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant;ENST00000572445.1_1_17:1564459-1565038:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 589.811845 1177.60914 1.4804 0.00087319 -1.4467 -0.00085329 0.033734 1.9896E-05 589.8109461606746 26.791 0.33653 25.009 24.76 25.096 -1.7821 0.014027 7.3263E-05 NaN 32.898 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1077600 2482 6337 1324 1326 0.02743611529399459 AEYAQSNH 8 Unmodified _AEYAQSNH_ 0 0 0 REV__nc|ENSG00000030066|Q12769|NUP160 REV__nc|ENSG00000030066|Q12769|NUP160 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2377624511719 2 460.198856 918.383159 NaN NaN NaN NaN NaN NaN NaN 119.77 1 115.31 114.81 115.81 -4.467 0 0 0 0.22757 1 23058 23058 13.615 10.984 1 + 2483 14013 1325 1327 2800 2800 -0.07929712589850624 AEYDEDSDC 9 Unmodified _AEYDEDSDC_ 0 0 0 REV__ENSG00000054690|ENST00000329153|PLEKHH1 REV__ENSG00000054690|ENST00000329153|PLEKHH1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6943969726562 2 523.666394 1045.31824 NaN NaN NaN NaN NaN NaN NaN 172.41 1 167.51 167.01 168.01 -4.8977 0 0 0 0.19631 1 34194 34194 0.20686 0.15706 1 + 2484 14107 1326 1328 2801 2801 -0.20261119968677122 AEYDLTTRIA 10 Unmodified _AEYDLTTRIA_ 0 0 0 EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant;ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3213500976562 2 576.798403 1151.58225 0.13243 7.6383E-05 0.014974 8.6371E-06 0.1474 8.502E-05 576.7983743535126 90.676 1.1699 90.676 90.221 91.391 0 112 32 5 0 0 0 4.5043E-07 1 17686 17686 143.21 93.659 1 162680000 2485 930 1327 1329 2802 2802 0.012525029181688296 AEYDLTTRIA 10 Unmodified _AEYDLTTRIA_ 0 0 0 EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant;ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.317626953125 2 576.798403 1151.58225 0.058659 3.3834E-05 0.20233 0.0001167 0.26099 0.00015054 576.7984908006208 94.744 0.87865 90.695 90.29 91.168 -4.0496 96 24 5 0 0 0 0.22507 1 18618 18618 77.049 47.208 1 129360000 2486 930 1327 1329 2803 2803 0.012525029181688296 AEYDLTTRIA 10 Unmodified _AEYDLTTRIA_ 0 0 0 EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant;ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3200073242188 2 576.798403 1151.58225 0.28908 0.00016674 -0.017953 -1.0355E-05 0.27113 0.00015639 576.7983780668488 94.789 0.97809 90.598 90.195 91.173 -4.1911 98 27 5 0 0 0 0.056362 1 18053 18053 111.31 71.359 1 125450000 2487 930 1327 1329 2804 2804 0.012525029181688296 AEYDLTTRIA 10 Unmodified _AEYDLTTRIA_ 0 0 0 EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant;ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENSG00000104408|ENST00000220849|EIF3E EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3131713867188 2 576.798403 1151.58225 0.031007 1.7885E-05 0.2231 0.00012869 0.25411 0.00014657 576.7985336592897 94.561 1.1839 90.68 90.293 91.477 -3.881 109 33 5 0 0 0 0.056362 1 18169 18169 111.31 69.353 1 116920000 2488 930 1327 1329 2805 2805 0.012525029181688296 AEYEAIIEK 9 Unmodified _AEYEAIIEK_ 0 0 0 REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2783813476562 2 533.276772 1064.53899 0.088792 4.7351E-05 2.1722 0.0011584 2.261 0.0012057 533.2780572648004 21.035 0.13575 21.035 20.951 21.087 0 5 3 2 0 0 0 0.48181 1 3513 3513 0.12781 0 1 231770 + 2489 19228 1328 1330 2806 2806 0.009303131409069465 AEYFRDMGY 9 Unmodified _AEYFRDMGY_ 0 0 0 tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1 tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1 tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3246459960938 2 576.244949 1150.47534 NaN NaN NaN NaN NaN NaN NaN 50.447 1 50.447 49.947 50.947 0 0 0 0 0.23508 1 9552 9552 4.756 0.42677 1 2490 25989 1329 1331 2807 2807 -0.09387370567833386 AEYGGWYKA 9 Unmodified _AEYGGWYKA_ 0 0 0 nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4 nc|ENSG00000137171|Q9NSK0-5|KLC4 nc|ENSG00000137171|Q9NSK0-5|KLC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2801513671875 2 522.742899 1043.47125 -0.1851 -9.6758E-05 0.4057 0.00021207 0.2206 0.00011532 522.7429789802665 81.011 0.59274 77.454 77.164 77.757 -3.557 34 16 3 0 0 0 0.64397 1 15840 15840 31.268 13.122 1 2109000 2491 4070 1330 1332 2808 2808 -0.048750919992244235 AEYGGWYKA 9 Unmodified _AEYGGWYKA_ 0 0 0 nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4 nc|ENSG00000137171|Q9NSK0-5|KLC4 nc|ENSG00000137171|Q9NSK0-5|KLC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2631225585938 2 522.742899 1043.47125 -0.65116 -0.00034039 0.25179 0.00013162 -0.39936 -0.00020876 522.7429926105103 81.272 0.59239 77.433 77.157 77.749 -3.8392 24 16 2 0 0 0 0.73268 1 15393 15393 18.146 6.6516 1 2487800 2492 4070 1330 1332 2809 2809 -0.048750919992244235 AEYGGWYKA 9 Unmodified _AEYGGWYKA_ 0 0 0 nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4 nc|ENSG00000137171|Q9NSK0-5|KLC4 nc|ENSG00000137171|Q9NSK0-5|KLC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.257568359375 2 522.742899 1043.47125 -0.15314 -8.0055E-05 -0.11873 -6.2067E-05 -0.27188 -0.00014212 522.7429053277534 80.997 0.65692 77.31 77.003 77.66 -3.6879 36 18 3 0 0 0 0.64397 1 15455 15455 31.268 6.2774 1 2351700 2493 4070 1330 1332 2810 2810 -0.048750919992244235 AEYGNIPVV 9 Unmodified _AEYGNIPVV_ 0 0 0 nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3;nc|ENSG00000069018|Q9HCX4-2|TRPC7;nc|ENSG00000069018|Q9HCX4-3|TRPC7;nc|ENSG00000137672|Q9Y210-2|TRPC6;ENSG00000069018|ENST00000513104|TRPC7;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6;TRPC6|p.G794Vfs*8|1|0.27|ENSG00000137672|chr11:101471213-101471213|T/-|frameshift_variant;TRPC6|p.G794Rfs*13|1|0.31|ENSG00000137672|chr11:101471212-101471213|-/T|frameshift_variant nc|ENSG00000138741|Q13507-3|TRPC3 nc|ENSG00000138741|Q13507-3|TRPC3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2539367675781 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 74.79 1 74.79 74.29 75.29 0 0 0 0 0.20294 1 14522 14522 22.736 5.794 1 2494 4206 1331 1333 2811 2811 0.00982078660570096 AEYGNIPVV 9 Unmodified _AEYGNIPVV_ 0 0 0 nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3;nc|ENSG00000069018|Q9HCX4-2|TRPC7;nc|ENSG00000069018|Q9HCX4-3|TRPC7;nc|ENSG00000137672|Q9Y210-2|TRPC6;ENSG00000069018|ENST00000513104|TRPC7;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6;TRPC6|p.G794Vfs*8|1|0.27|ENSG00000137672|chr11:101471213-101471213|T/-|frameshift_variant;TRPC6|p.G794Rfs*13|1|0.31|ENSG00000137672|chr11:101471212-101471213|-/T|frameshift_variant nc|ENSG00000138741|Q13507-3|TRPC3 nc|ENSG00000138741|Q13507-3|TRPC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2533264160156 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 78.204 1 74.741 74.241 75.241 -3.4633 0 0 0 0.17061 1 15270 15270 27.629 4.4804 1 2495 4206 1331 1333 2812 2812 0.00982078660570096 AEYGNIPVV 9 Unmodified _AEYGNIPVV_ 0 0 0 nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3;nc|ENSG00000069018|Q9HCX4-2|TRPC7;nc|ENSG00000069018|Q9HCX4-3|TRPC7;nc|ENSG00000137672|Q9Y210-2|TRPC6;ENSG00000069018|ENST00000513104|TRPC7;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6;TRPC6|p.G794Vfs*8|1|0.27|ENSG00000137672|chr11:101471213-101471213|T/-|frameshift_variant;TRPC6|p.G794Rfs*13|1|0.31|ENSG00000137672|chr11:101471212-101471213|-/T|frameshift_variant nc|ENSG00000138741|Q13507-3|TRPC3 nc|ENSG00000138741|Q13507-3|TRPC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.253662109375 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 78.396 1 74.63 74.13 75.13 -3.7664 0 0 0 0.23508 1 14866 14866 13.042 1.4022 1 2496 4206 1331 1333 2813 2813 0.00982078660570096 AEYHDIER 8 Unmodified _AEYHDIER_ 0 0 0 REV__ENSG00000189431|ENST00000529419|RASSF10 REV__ENSG00000189431|ENST00000529419|RASSF10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.23907470703125 3 344.829684 1031.46722 -0.11327 -3.9059E-05 1.0809 0.00037274 0.96766 0.00033368 344.83001365195656 42.728 0.46202 42.728 42.491 42.953 0 14 12 2 0 0 0 1.0267 1 7994 7994 3.5965 0 1 390990 + 2497 19208 1332 1334 2814 2814 -0.047251814929495595 AEYHDIER 8 Unmodified _AEYHDIER_ 0 0 0 REV__ENSG00000189431|ENST00000529419|RASSF10 REV__ENSG00000189431|ENST00000529419|RASSF10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 344.829684 1031.46722 -0.28647 -9.8785E-05 1.0823 0.00037322 0.79587 0.00027444 344.82970012371635 45.636 0.24204 42.795 42.619 42.861 -2.8409 0.010422 0.00015694 NaN 3.5965 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 874980 + 2498 19208 1332 1334 -0.047251814929495595 AEYHDIER 8 Unmodified _AEYHDIER_ 0 0 0 REV__ENSG00000189431|ENST00000529419|RASSF10 REV__ENSG00000189431|ENST00000529419|RASSF10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 344.829684 1031.46722 -0.014808 -5.1061E-06 0.78803 0.00027174 0.77323 0.00026663 344.82970086457453 45.697 0.3102 42.832 42.657 42.968 -2.8653 0.046686 -0.00014753 NaN 3.5965 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 614780 + 2499 19208 1332 1334 -0.047251814929495595 AEYHGHQD 8 Unmodified _AEYHGHQD_ 0 0 0 ESPNL|p.R317Q|1|0.26|ENSG00000144488|chr2:238116997-238116997|G/A|missense_variant ESPNL|p.R317Q|1|0.26|ENSG00000144488|chr2:238116997-238116997|G/A|missense_variant ESPNL|p.R317Q|1|0.26|ENSG00000144488|chr2:238116997-238116997|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7322998046875 2 478.696481 955.378408 NaN NaN NaN NaN NaN NaN NaN 94.647 1 90.456 89.956 90.956 -4.1911 0 0 0 0.2343 1 18060 18060 0.063987 0 1 2500 11786 1333 1335 2815 2815 -0.10106596732612161 AEYIKGHTK 9 Unmodified _AEYIKGHTK_ 0 0 0 REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1 REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6760864257812 2 523.785099 1045.55564 0.2297 0.00012031 2.7911 0.001462 3.0208 0.0015823 523.7869130789438 24.875 0.33209 24.875 24.681 25.013 0 12 9 2 0 0 0 0.80521 1 4317 4317 15.847 2.3393 1 477680 + 2501 25437 1334 1336 2816 2816 0.03468858817495857 AEYIRNNY 8 Unmodified _AEYIRNNY_ 0 0 0 nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56 nc|nan|Q8IXR9-2|C12orf56 nc|nan|Q8IXR9-2|C12orf56 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.271484375 2 521.751256 1041.48796 -0.33317 -0.00017383 4.0721 0.0021246 3.7389 0.0019508 522.7540666762566 103.41 0.88176 99.226 98.805 99.687 -4.1861 64 25 3 0 0 0 0.64227 2 20337 20331;20337 19.439 4.8573 1 2742400 2502 6980 1335 1337 2817;2818 2818 -0.03112591113290364 AEYITCYGF 9 Unmodified _AEYITCYGF_ 0 0 0 REV__nc|ENSG00000142609|Q9C0B2|CFAP74 REV__nc|ENSG00000142609|Q9C0B2|CFAP74 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.286376953125 2 533.731143 1065.44773 NaN NaN NaN NaN NaN NaN NaN 108.01 1 108.01 107.51 108.51 0 0 0 0 0.23508 1 21239 21239 8.5933 2.8329 1 + 2503 16679 1336 1338 2819 2819 -0.08237273828081015 AEYLHWLL 8 Unmodified _AEYLHWLL_ 0 0 0 ENSG00000204316|ENST00000309352|MRPL38;nc|ENSG00000204316|Q96DV4-2|MRPL38 ENSG00000204316|ENST00000309352|MRPL38 ENSG00000204316|ENST00000309352|MRPL38 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2672729492188 2 522.779285 1043.54402 0.14165 7.405E-05 -0.29837 -0.00015598 -0.15672 -8.193E-05 522.7791576343192 18.418 0.49146 18.418 18.195 18.687 0 33 13 3 0 0 0 0.8748 1 2996 2996 14.838 9.9413 1 3131400 2504 7571 1337 1339 2820 2820 0.023986617941773147 AEYLIKEGY 9 Unmodified _AEYLIKEGY_ 0 0 0 PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant;ENSG00000085377|ENST00000652536|PREP PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7808227539062 2 543.279315 1084.54408 0.41939 0.00022785 -0.46502 -0.00025264 -0.045631 -2.479E-05 543.2789870072648 84.508 0.77477 84.508 84.099 84.874 0 64 21 4 0 0 0 6.9608E-05 3 16474 16422;16474;16525 128.93 63.697 1 24153000 2505 1678 1338 1340 2821;2822;2823 2822 0.005186170035358373 AEYLIKEGY 9 Unmodified _AEYLIKEGY_ 0 0 0 PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant;ENSG00000085377|ENST00000652536|PREP PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.780517578125 2 543.279315 1084.54408 0.13825 7.5111E-05 -0.32204 -0.00017496 -0.18378 -9.9845E-05 543.2790593553852 88.523 0.89572 84.73 84.229 85.125 -3.7926 72 24 4 0 0 0 0.0024928 2 17324 17324;17364 117.76 52.526 1 22530000 2506 1678 1338 1340 2824;2825 2824 0.005186170035358373 AEYLIKEGY 9 Unmodified _AEYLIKEGY_ 0 0 0 PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant;ENSG00000085377|ENST00000652536|PREP PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7809448242188 2 543.279315 1084.54408 0.39421 0.00021417 -0.6425 -0.00034905 -0.24829 -0.00013489 543.2789575962302 88.677 0.82754 84.682 84.256 85.083 -3.9953 100 23 6 0 0 0 6.9608E-05 3 16873 16852;16873;16922 128.93 63.697 1 22588000 2507 1678 1338 1340 2826;2827;2828 2827 0.005186170035358373 AEYLIKEGY 9 Unmodified _AEYLIKEGY_ 0 0 0 PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant;ENSG00000085377|ENST00000652536|PREP PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78076171875 2 543.279315 1084.54408 0.28127 0.00015281 -0.55339 -0.00030065 -0.27212 -0.00014784 543.2789514556716 88.408 1.0828 84.658 84.118 85.201 -3.7501 111 30 6 0 0 0 6.9608E-05 2 16925 16876;16925 128.93 63.697 1 23149000 2508 1678 1338 1340 2829;2830 2830 0.005186170035358373 AEYLQPKA 8 Unmodified _AEYLQPKA_ 0 0 0 TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant;nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24798583984375 2 460.247818 918.481082 0.37447 0.00017235 -0.20484 -9.4278E-05 0.16963 7.8072E-05 460.24772484583076 40.053 0.603 40.053 39.859 40.462 0 32 16 3 0 0 0 0.16655 3 7466 7422;7466;7510 49.933 28.186 1 2181700 2509 1419 1339 1341 2831;2832;2833 2832 0.01858096006139931 AEYLQPKA 8 Unmodified _AEYLQPKA_ 0 0 0 TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant;nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2477722167969 2 460.247818 918.481082 -0.19662 -9.0496E-05 0.75206 0.00034613 0.55544 0.00025564 460.24805687007364 43.017 0.71478 40.298 39.951 40.666 -2.7191 33 19 3 0 0 0 0.12259 4 8060 8009;8060;8092;8107 58.679 34.005 1 2136000 2510 1419 1339 1341 2834;2835;2836;2837 2835 0.01858096006139931 AEYLQPKA 8 Unmodified _AEYLQPKA_ 0 0 0 TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant;nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.248291015625 2 460.247818 918.481082 -0.099748 -4.5909E-05 0.33834 0.00015572 0.23859 0.00010981 460.2479418568262 42.885 0.51771 40.234 39.954 40.472 -2.651 32 14 3 0 0 0 0.16655 2 7697 7697;7743 49.933 23.049 1 1974400 2511 1419 1339 1341 2838;2839 2838 0.01858096006139931 AEYLQPKA 8 Unmodified _AEYLQPKA_ 0 0 0 TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant;nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2481689453125 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 43.212 1 40.446 39.946 40.946 -2.7661 0 0 0 0.14659 1 7798 7798 37.974 18.535 1 2512 1419 1339 1341 2840 2840 0.01858096006139931 AEYLQPKA 8 Unmodified _AEYLQPKA_ 0 0 0 TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant;nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2478942871094 2 460.247818 918.481082 -0.017228 -7.9289E-06 0.33805 0.00015558 0.32082 0.00014766 460.247953564824 42.857 0.58956 40.251 39.969 40.558 -2.606 25 16 2 0 0 0 0.16655 2 7690 7690;7738 49.933 23.049 1 1634800 2513 1419 1339 1341 2841;2842 2841 0.01858096006139931 AEYLQPKA 8 Unmodified _AEYLQPKA_ 0 0 0 TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant;nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2480773925781 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 43.182 1 40.576 40.076 41.076 -2.606 0 0 0 0.14659 1 7787 7787 37.974 18.535 1 2514 1419 1339 1341 2843 2843 0.01858096006139931 AEYLRVAP 8 Unmodified _AEYLRVAP_ 0 0 0 ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2431335449219 2 459.75581 917.497067 0.57019 0.00026215 -1.9146 -0.00088023 -1.3444 -0.00061808 459.755661368854 77.79 0.37736 77.79 77.602 77.979 0 16 10 2 0 0 0 0.47729 1 15115 15115 29.082 8.628 1 890990 2515 4664 1340 1342 2844 2844 0.035018022430335805 AEYLRVAP 8 Unmodified _AEYLRVAP_ 0 0 0 ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24810791015625 2 459.75581 917.497067 -0.01807 -8.3079E-06 -1.4617 -0.00067204 -1.4798 -0.00068035 459.75586764924446 81.685 0.68872 77.846 77.474 78.162 -3.8392 29 19 2 0 0 0 0.39104 1 15515 15515 32.786 6.5175 1 926270 2516 4664 1340 1342 2845 2845 0.035018022430335805 AEYNAEEP 8 Unmodified _AEYNAEEP_ 0 0 0 REV__ENSG00000068394|ENST00000156109|GPKOW REV__ENSG00000068394|ENST00000156109|GPKOW MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5256042480469 2 461.693072 921.371591 -0.28674 -0.00013238 0.67918 0.00031357 0.39244 0.00018119 461.6933720720049 53.012 1.1461 50.128 49.657 50.803 -2.8837 66 32 3 0 0 0 0.31324 1 10119 10119 36.127 14.38 1 2776900 + 2517 14226 1341 1343 2846 2846 -0.0922395440385344 AEYNAEEP 8 Unmodified _AEYNAEEP_ 0 0 0 REV__ENSG00000068394|ENST00000156109|GPKOW REV__ENSG00000068394|ENST00000156109|GPKOW MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.693072 921.371591 0.0065374 3.0183E-06 0.25819 0.00011921 0.26473 0.00012222 461.6931569079828 53.307 1.2634 50.219 49.619 50.883 -3.0876 0.093329 -7.7406E-05 NaN 36.127 49 35 2 NaN NaN NaN NaN 0 NaN NaN 0 2239900 + 2518 14226 1341 1343 -0.0922395440385344 AEYNAEEP 8 Unmodified _AEYNAEEP_ 0 0 0 REV__ENSG00000068394|ENST00000156109|GPKOW REV__ENSG00000068394|ENST00000156109|GPKOW MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.693072 921.371591 -0.048634 -2.2454E-05 0.40351 0.0001863 0.35488 0.00016384 461.69314349411894 53.174 1.065 50.079 49.586 50.651 -3.0954 -0.047304 5.678E-05 NaN 36.127 54 30 3 NaN NaN NaN NaN 0 NaN NaN 0 1871400 + 2519 14226 1341 1343 -0.0922395440385344 AEYPAVKF 8 Unmodified _AEYPAVKF_ 0 0 0 nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL nc|ENSG00000136940|Q13371-2|PDCL nc|ENSG00000136940|Q13371-2|PDCL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.2642822265625 2 462.744911 923.475269 0.54548 0.00025242 -0.29498 -0.0001365 0.2505 0.00011592 462.7447209527641 102.67 1.2716 98.648 97.972 99.243 -4.0212 109 35 4 0 0 0 8448 1 19762 19762 29.841 19.767 1 24952000 2520 4056 1342 1344 2847 2847 0.010469974944726346 AEYPAVKF 8 Unmodified _AEYPAVKF_ 0 0 0 nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL nc|ENSG00000136940|Q13371-2|PDCL nc|ENSG00000136940|Q13371-2|PDCL MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 462.744911 923.475269 0.35621 0.00016483 0.026887 1.2442E-05 0.3831 0.00017728 462.7448872626235 98.766 1.215 98.766 98.123 99.338 0 0.088689 1.1849E-05 NaN 29.841 86 34 3 NaN NaN NaN NaN 0 NaN NaN 0 20595000 2521 4056 1342 1344 0.010469974944726346 AEYPAVKF 8 Unmodified _AEYPAVKF_ 0 0 0 nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL nc|ENSG00000136940|Q13371-2|PDCL nc|ENSG00000136940|Q13371-2|PDCL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 462.744911 923.475269 -0.13738 -6.357E-05 0.36285 0.00016791 0.22547 0.00010434 462.7450046425242 102.88 1.3473 98.697 98.027 99.375 -4.1861 0.019321 0.00032278 NaN 29.841 115 38 4 NaN NaN NaN NaN 0 NaN NaN 0 27388000 2522 4056 1342 1344 0.010469974944726346 AEYPAVKF 8 Unmodified _AEYPAVKF_ 0 0 0 nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL nc|ENSG00000136940|Q13371-2|PDCL nc|ENSG00000136940|Q13371-2|PDCL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 462.744911 923.475269 0.22277 0.00010308 -0.00020903 -9.6726E-08 0.22256 0.00010299 462.7448655246099 102.92 1.3647 98.599 97.874 99.239 -4.3208 -0.078141 -1.3228E-05 NaN 29.841 113 38 4 NaN NaN NaN NaN 0 NaN NaN 0 28938000 2523 4056 1342 1344 0.010469974944726346 AEYQAFREA 9 Unmodified _AEYQAFREA_ 0 0 0 nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT;ENST00000477340.5_1_20:62339420-62365174:+|nuORF nc|ENSG00000197114|Q8N5A5-3|ZGPAT nc|ENSG00000197114|Q8N5A5-3|ZGPAT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.779296875 2 542.756538 1083.49852 0.10567 5.7352E-05 2.3186 0.0012584 2.4242 0.0013158 542.7568277325398 57.302 1.1594 54.407 53.751 54.911 -2.8944 87 32 4 0 0 0 0.33094 2 11013 11013;11045 29.841 7.1043 1 3461800 2524 7329 1343 1345 2848;2849 2848 -0.0398860845884883 AEYQEHWFYF 10 Unmodified _AEYQEHWFYF_ 0 0 0 nc|ENSG00000153531|Q8NDY3-2|ADPRHL1;nc|ENSG00000153531|Q8NDY3|ADPRHL1;ENSG00000153531|ENST00000612156|ADPRHL1;ADPRHL1|p.T214M|1|0.27|ENSG00000153531|chr13:113428957-113428957|G/A|missense_variant nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 473.87060546875 3 473.87166 1418.59315 NaN NaN NaN NaN NaN NaN NaN 14.372 1 14.372 13.872 14.872 0 0 0 0 0.22588 1 2138 2138 0.15932 0 1 2525 4972 1344 1346 2850 2850 -0.09940094707530989 AEYQRNIVS 9 Unmodified _AEYQRNIVS_ 0 0 0 nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;ENST00000491694.1_1_3:111658417-111664240:+|nuORF nc|ENSG00000144824|Q86SQ0-2|PHLDB2 nc|ENSG00000144824|Q86SQ0-2|PHLDB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.265380859375 2 540.277638 1078.54072 0.28084 0.00015173 -0.23739 -0.00012826 0.043449 2.3474E-05 540.2774847301364 34.929 0.47844 34.929 34.689 35.168 0 40 13 4 0 0 0 0.058839 2 6409 6389;6409 74.094 72.638 1 9601800 2526 4581 1345 1347 2851;2852 2852 0.004593669495079666 AEYQRNIVS 9 Unmodified _AEYQRNIVS_ 0 0 0 nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;ENST00000491694.1_1_3:111658417-111664240:+|nuORF nc|ENSG00000144824|Q86SQ0-2|PHLDB2 nc|ENSG00000144824|Q86SQ0-2|PHLDB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2809448242188 2 540.277638 1078.54072 -0.18432 -9.9584E-05 0.45655 0.00024666 0.27222 0.00014708 540.277819481488 37.502 0.55199 35.033 34.708 35.26 -2.4688 48 15 4 0 0 0 0.39591 2 6903 6903;6946 26.021 9.4548 1 12976000 2527 4581 1345 1347 2853;2854 2853 0.004593669495079666 AEYQRNIVS 9 Unmodified _AEYQRNIVS_ 0 0 0 nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;ENST00000491694.1_1_3:111658417-111664240:+|nuORF nc|ENSG00000144824|Q86SQ0-2|PHLDB2 nc|ENSG00000144824|Q86SQ0-2|PHLDB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2637329101562 2 540.277638 1078.54072 0.19208 0.00010378 -0.012482 -6.7437E-06 0.1796 9.7035E-05 540.2776025743376 37.395 0.71731 35.047 34.789 35.506 -2.3479 52 20 4 0 0 0 0.058839 2 6636 6620;6636 60.47 44.196 1 12941000 2528 4581 1345 1347 2855;2856 2856 0.004593669495079666 AEYQRNIVS 9 Unmodified _AEYQRNIVS_ 0 0 0 nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;ENST00000491694.1_1_3:111658417-111664240:+|nuORF nc|ENSG00000144824|Q86SQ0-2|PHLDB2 nc|ENSG00000144824|Q86SQ0-2|PHLDB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2804565429688 2 540.277638 1078.54072 0.31169 0.0001684 -0.163 -8.8063E-05 0.14869 8.0336E-05 540.2775309993605 37.352 0.69324 35.015 34.738 35.431 -2.3375 56 19 4 0 0 0 0.39591 2 6585 6585;6630 26.021 9.8716 1 8391300 2529 4581 1345 1347 2857;2858 2857 0.004593669495079666 AEYRENELE 9 Unmodified _AEYRENELE_ 0 0 0 REV__ENSG00000151466|ENST00000281142|SCLT1;REV__ENST00000502495.1_1_4:129873642-129918394:-|nuORF REV__ENST00000502495.1_1_4:129873642-129918394:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.312744140625 2 576.762017 1151.50948 NaN NaN NaN NaN NaN NaN NaN 27.301 1 27.301 26.801 27.801 0 0 0 0 0.23508 1 4812 4812 7.9102 0 1 + 2530 17068;22438 1346 1348 2859 2859 -0.060212508752329086 AEYRKCFIG 9 Unmodified _AEYRKCFIG_ 0 0 0 ENST00000317623.8_2_14:60582660-60585060:+|nuORF ENST00000317623.8_2_14:60582660-60585060:+|nuORF ENST00000317623.8_2_14:60582660-60585060:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7747192382812 2 543.773677 1085.5328 NaN NaN NaN NaN NaN NaN NaN 17.629 1 16.318 15.818 16.818 -1.3109 0 0 0 0.23508 1 2832 2832 10.824 2.0785 1 2531 8689 1347 1349 2860 2860 -0.006544835716113084 AEYRKQTKQ 9 Unmodified _AEYRKQTKQ_ 0 0 0 nc|ENSG00000089505|Q8IZ96-16|CMTM1;nc|ENSG00000089505|Q8IZ96-9|CMTM1 nc|ENSG00000089505|Q8IZ96-16|CMTM1 nc|ENSG00000089505|Q8IZ96-16|CMTM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3139038085938 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 37.951 1 35.482 34.982 35.982 -2.4688 0 0 0 0.23508 1 7020 7020 6.7232 0.51738 1 2532 12247 1348 1350 2861 2861 0.04019031249231375 AEYSTWNR 8 Unmodified _AEYSTWNR_ 0 0 0 ENST00000535399.1_1_12:132195753-132198841:+|nuORF;SFSWAP|p.K278Nfs*36|1|0.4|ENSG00000061936|chr12:131725624-131725624|A/-|frameshift_variant;SFSWAP|p.H761Afs*23|1|0.09|ENSG00000061936|chr12:131778196-131778197|-/A|frameshift_variant;SFSWAP|p.K760Sfs*72|2|0.23|ENSG00000061936|chr12:131778197-131778197|A/-|frameshift_variant;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP ENST00000535399.1_1_12:132195753-132198841:+|nuORF ENST00000535399.1_1_12:132195753-132198841:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.23126220703125 3 342.826163 1025.45666 0.039021 1.3378E-05 -0.39457 -0.00013527 -0.35554 -0.00012189 342.8260039110849 38.991 0.52062 36.549 36.301 36.821 -2.4419 28 14 2 0 0 0 1.0267 1 6918 6918 1.4819 1.2461 1 3767100 2533 1320 1349 1351 2862 2862 -0.05505164147371033 AEYSTWNR 8 Unmodified _AEYSTWNR_ 0 0 0 ENST00000535399.1_1_12:132195753-132198841:+|nuORF;SFSWAP|p.K278Nfs*36|1|0.4|ENSG00000061936|chr12:131725624-131725624|A/-|frameshift_variant;SFSWAP|p.H761Afs*23|1|0.09|ENSG00000061936|chr12:131778196-131778197|-/A|frameshift_variant;SFSWAP|p.K760Sfs*72|2|0.23|ENSG00000061936|chr12:131778197-131778197|A/-|frameshift_variant;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP ENST00000535399.1_1_12:132195753-132198841:+|nuORF ENST00000535399.1_1_12:132195753-132198841:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 342.826163 1025.45666 -0.3043 -0.00010432 0.18762 6.4321E-05 -0.11668 -4.0002E-05 342.8261847804276 36.715 0.60732 36.715 36.42 37.027 0 0.10833 4.1348E-05 NaN 1.4819 44 16 4 NaN NaN NaN NaN 0 NaN NaN 0 6584400 2534 1320 1349 1351 -0.05505164147371033 AEYSTWNR 8 Unmodified _AEYSTWNR_ 0 0 0 ENST00000535399.1_1_12:132195753-132198841:+|nuORF;SFSWAP|p.K278Nfs*36|1|0.4|ENSG00000061936|chr12:131725624-131725624|A/-|frameshift_variant;SFSWAP|p.H761Afs*23|1|0.09|ENSG00000061936|chr12:131778196-131778197|-/A|frameshift_variant;SFSWAP|p.K760Sfs*72|2|0.23|ENSG00000061936|chr12:131778197-131778197|A/-|frameshift_variant;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP ENST00000535399.1_1_12:132195753-132198841:+|nuORF ENST00000535399.1_1_12:132195753-132198841:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 342.826163 1025.45666 -0.57425 -0.00019687 0.25655 8.7952E-05 -0.3177 -0.00010892 342.82622441922314 39.134 0.56586 36.585 36.33 36.896 -2.5491 -0.021832 0.00011224 NaN 1.4819 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3649900 2535 1320 1349 1351 -0.05505164147371033 AEYSTWNR 8 Unmodified _AEYSTWNR_ 0 0 0 ENST00000535399.1_1_12:132195753-132198841:+|nuORF;SFSWAP|p.K278Nfs*36|1|0.4|ENSG00000061936|chr12:131725624-131725624|A/-|frameshift_variant;SFSWAP|p.H761Afs*23|1|0.09|ENSG00000061936|chr12:131778196-131778197|-/A|frameshift_variant;SFSWAP|p.K760Sfs*72|2|0.23|ENSG00000061936|chr12:131778197-131778197|A/-|frameshift_variant;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP ENST00000535399.1_1_12:132195753-132198841:+|nuORF ENST00000535399.1_1_12:132195753-132198841:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.826163 1025.45666 -0.52738 -0.0001808 0.42873 0.00014698 -0.098657 -3.3822E-05 342.8262602752386 38.983 0.6248 36.578 36.301 36.925 -2.4049 -0.028485 0.00028932 NaN 1.4819 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2653800 2536 1320 1349 1351 -0.05505164147371033 AEYTAKIA 8 Unmodified _AEYTAKIA_ 0 0 0 ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.88897705078125 2 433.734543 865.454533 -0.32724 -0.00014193 0.60931 0.00026428 0.28207 0.00012234 433.7346756881251 41.362 0.58525 38.728 38.432 39.017 -2.6348 43 16 4 0 0 0 0.99494 1 7686 7686 8.5933 3.8373 1 6788400 2537 1839 1350 1352 2863 2863 0.016424071148207986 AEYTAKIA 8 Unmodified _AEYTAKIA_ 0 0 0 ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 433.8888244628906 2 433.734543 865.454533 -0.075974 -3.2953E-05 0.41604 0.00018045 0.34007 0.0001475 433.7345217271686 41.295 1.1244 38.755 37.887 39.011 -2.5398 49 31 3 0 0 0 0.99494 1 7369 7369 8.5933 3.8373 1 6103900 2538 1839 1350 1352 2864 2864 0.016424071148207986 AEYTHVEA 8 Unmodified _AEYTHVEA_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2313537597656 2 460.211432 918.408311 0.16559 7.6208E-05 -0.088631 -4.0789E-05 0.076961 3.5418E-05 460.2113699018222 31.812 0.38737 29.581 29.373 29.76 -2.2305 20 10 3 0 0 0 0.91917 1 5770 5770 26.884 1.4843 1 1380600 2539 3852 1351 1353 2865 2865 -0.05415657787273176 AEYVGHLRA 9 Unmodified _AEYVGHLRA_ 0 0 0 nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6;ENST00000495515.1_1_X:48674602-48675118:+|nuORF;HDAC6|p.G751Afs*16|1|0.44|ENSG00000094631|chrX:48820165-48820165|G/-|frameshift_variant nc|ENSG00000094631|Q9UBN7-2|HDAC6 nc|ENSG00000094631|Q9UBN7-2|HDAC6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 508.2688293457031 2 508.269616 1014.52468 NaN NaN NaN NaN NaN NaN NaN 42.854 1 40.134 39.634 40.634 -2.7191 0 0 0 0.23508 1 8023 8023 10.074 0.72649 1 2540 1847 1352 1354 2866 2866 0.017997055032765275 AEYVLLKK 8 Unmodified _AEYVLLKK_ 0 0 0 REV__ENST00000522804.5_1_8:87497076-87500839:-|nuORF REV__ENST00000522804.5_1_8:87497076-87500839:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.86785888671875 3 321.867299 962.580068 NaN NaN NaN NaN NaN NaN NaN 19.35 1 19.35 18.85 19.85 0 0 0 0 0.21486 1 3160 3160 0.40072 0 1 + 2541 18514 1353 1355 2867 2867 0.097281189710543 AEYVSSTLS 9 Unmodified _AEYVSSTLS_ 0 0 0 ENSG00000168509|ENST00000336751|HJV ENSG00000168509|ENST00000336751|HJV ENSG00000168509|ENST00000336751|HJV MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73193359375 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 94.666 1 90.629 90.129 91.129 -4.0368 0 0 0 0.18755 1 18551 18551 2.8827 0 1 2542 5917 1354 1356 2868 2868 -0.029665218185982667 AEYWSQEPA 9 Unmodified _AEYWSQEPA_ 0 0 0 ENST00000491009.5_1_17:16342705-16344394:+|nuORF;ENST00000475947.6_1_17:16342648-16344739:+|nuORF ENST00000491009.5_1_17:16342705-16344394:+|nuORF ENST00000491009.5_1_17:16342705-16344394:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.276611328125 2 540.735271 1079.45599 0.4212 0.00022776 0.86501 0.00046774 1.2862 0.0006955 540.735651436807 74.786 0.63786 74.786 74.602 75.24 0 27 17 2 0 0 0 0.54058 1 14527 14527 12.241 11.832 1 1497500 2543 10279 1355 1357 2869 2869 -0.0805600358708034 AEYYKTKY 8 Unmodified _AEYYKTKY_ 0 0 0 DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;DICER1|p.L978R|1|0.37|ENSG00000100697|chr14:95106095-95106095|A/C|missense_variant DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.263671875 2 533.266207 1064.51786 NaN NaN NaN NaN NaN NaN NaN 25.888 1 23.966 23.466 24.466 -1.9222 0 0 0 0.21486 1 4272 4272 12.532 2.4576 1 2544 835 1356 1358 2870 2870 -0.01181652167952052 AFAFLAAY 8 Unmodified _AFAFLAAY_ 0 0 0 REV__ENSG00000180998|ENST00000321662|GPR137C REV__ENSG00000180998|ENST00000321662|GPR137C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2162780761719 2 437.228897 872.44324 NaN NaN NaN NaN NaN NaN NaN 73.514 1 70.203 69.703 70.703 -3.3107 0 0 0 0.21486 1 14332 14332 11.114 1.767 1 + 2545 18710 1357 1359 2871 2871 0.0019162981130875778 AFARKVSQ 8 Unmodified _AFARKVSQ_ 0 0 0 REV__ENSG00000172766|ENST00000379406|NAA16 REV__ENSG00000172766|ENST00000379406|NAA16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7599792480469 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 88.143 1 84.393 83.893 84.893 -3.7501 0 0 0 0.23107 1 16869 16869 0.62683 0.50396 1 + 2546 18306 1358 1360 2872 2872 0.05176624337184421 AFARLRFRD 9 Unmodified _AFARLRFRD_ 0 0 0 REV__ENSG00000129910|ENST00000289746|CDH15 REV__ENSG00000129910|ENST00000289746|CDH15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.323486328125 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 13.152 1 13.152 12.652 13.652 0 0 0 0 0.19657 1 1881 1881 4.897 2.3985 1 + 2547 15974 1359 1361 2873 2873 0.06666764931196667 AFATKHATHYY 11 Unmodified _AFATKHATHYY_ 0 0 0 REV__ENST00000370651.5_1_6:64292160-64292229:+|nuORF REV__ENST00000370651.5_1_6:64292160-64292229:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21636962890625 3 437.21565 1308.62512 NaN NaN NaN NaN NaN NaN NaN 83.834 1 83.834 83.334 84.334 0 0 0 0 0.2225 1 16345 16345 13.519 3.3681 1 + 2548 20989 1360 1362 2874 2874 -0.016846822337129197 AFDKARPD 8 Unmodified _AFDKARPD_ 0 0 0 REV__nc|ENSG00000151835|Q9NZJ4-2|SACS REV__nc|ENSG00000151835|Q9NZJ4-2|SACS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24627685546875 2 460.235242 918.45593 -0.086344 -3.9739E-05 0.32173 0.00014807 0.23538 0.00010833 460.23554159284356 48.42 0.662 45.471 45.226 45.888 -2.9499 38 18 3 0 0 0 0.66265 1 8897 8897 18.135 4.6271 1 1488000 + 2549 17086 1361 1363 2875 2875 -0.006559587964375169 AFDLPTRRRL 10 Unmodified _AFDLPTRRRL_ 0 0 0 REV__ENST00000379409.6_2_1:906220-907525:+|nuORF REV__ENST00000379409.6_2_1:906220-907525:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7675170898438 2 622.864746 1243.71494 NaN NaN NaN NaN NaN NaN NaN 62.703 1 59.288 58.788 59.788 -3.4158 0 0 0 0.22588 1 11707 11707 3.9444 0.3479 1 + 2550 21137 1362 1364 2876 2876 0.10282992165502947 AFDSVTIY 8 Unmodified _AFDSVTIY_ 0 0 0 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000159899|ENST00000342694|NPR2;ENST00000368677.2_1_1:153661447-153665772:+|nuORF;ENSG00000169418|ENST00000368680|NPR1 nc|ENSG00000159899|P20594-2|NPR2 nc|ENSG00000159899|P20594-2|NPR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22833251953125 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 35.878 1 33.601 33.101 34.101 -2.2766 0 0 0 0.22847 1 6318 6318 13.615 3.5409 1 2551 5223 1363 1365 2877 2877 -0.02209299122102948 AFEYEEPY 8 Unmodified _AFEYEEPY_ 0 0 0 REV__nc|ENSG00000076043|Q9Y3B8-2|REXO2 REV__nc|ENSG00000076043|Q9Y3B8-2|REXO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 349.5039978027344 3 349.815041 1046.42329 -0.82477 -0.00028852 0.64175 0.00022449 -0.18302 -6.4023E-05 349.8152387465155 80.07 0.68835 76.394 76.043 76.731 -3.676 40 19 3 0 0 0 0.88997 1 15200 15200 0.62683 0.62683 1 4043100 + 2552 14343 1364 1366 2878 2878 -0.09806210709962215 AFEYEEPY 8 Unmodified _AFEYEEPY_ 0 0 0 REV__nc|ENSG00000076043|Q9Y3B8-2|REXO2 REV__nc|ENSG00000076043|Q9Y3B8-2|REXO2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 349.815041 1046.42329 -0.097318 -3.4043E-05 -0.13823 -4.8356E-05 -0.23555 -8.2399E-05 349.81495781523637 75.967 0.69881 75.967 75.645 76.344 0 -0.29624 -0.00035972 NaN 0.62683 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3512100 + 2553 14343 1364 1366 -0.09806210709962215 AFEYEEPY 8 Unmodified _AFEYEEPY_ 0 0 0 REV__nc|ENSG00000076043|Q9Y3B8-2|REXO2 REV__nc|ENSG00000076043|Q9Y3B8-2|REXO2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 349.815041 1046.42329 -0.24283 -8.4947E-05 0.29725 0.00010398 0.054418 1.9036E-05 349.81506254301337 79.859 0.56483 76.349 75.979 76.543 -3.5102 0.085874 9.7297E-05 NaN 0.62683 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2698300 + 2554 14343 1364 1366 -0.09806210709962215 AFEYEEPY 8 Unmodified _AFEYEEPY_ 0 0 0 REV__nc|ENSG00000076043|Q9Y3B8-2|REXO2 REV__nc|ENSG00000076043|Q9Y3B8-2|REXO2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 349.815041 1046.42329 -0.039394 -1.378E-05 0.015005 5.249E-06 -0.024389 -8.5315E-06 349.8149614018849 80.148 0.66145 76.343 76.037 76.698 -3.8048 0.079882 -0.00019891 NaN 0.62683 40 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3294200 + 2555 14343 1364 1366 -0.09806210709962215 AFFALPGIA 9 Unmodified _AFFALPGIA_ 0 0 0 TMEM109|p.S100P|1|0.18|ENSG00000110108|chr11:60920946-60920946|T/C|missense_variant TMEM109|p.S100P|1|0.18|ENSG00000110108|chr11:60920946-60920946|T/C|missense_variant TMEM109|p.S100P|1|0.18|ENSG00000110108|chr11:60920946-60920946|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7562255859375 2 453.757821 905.501089 NaN NaN NaN NaN NaN NaN NaN 57.872 1 54.961 54.461 55.461 -2.9105 0 0 0 0.19622 1 11107 11107 0.96228 0.83941 1 2556 25857 1365 1367 2879 2879 0.044558917367339745 AFFFLHYH 8 Unmodified _AFFFLHYH_ 0 0 0 REV__nc|ENSG00000138639|Q8N264-5|ARHGAP24 REV__nc|ENSG00000138639|Q8N264-5|ARHGAP24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27783203125 2 541.266345 1080.51814 0.52436 0.00028382 0.44826 0.00024263 0.97262 0.00052645 541.2664057553781 20.57 0.80951 19.173 18.688 19.498 -1.3966 31 22 2 0 0 0 8448 1 3473 3473 0.12286 0 1 1587400 + 2557 24063 1366 1368 2880 2880 -0.018901876574545895 AFFPPPNAT 9 Unmodified _AFFPPPNAT_ 0 0 0 ENST00000537641.5_1_11:61183575-61183878:-|nuORF;ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7 ENST00000537641.5_1_11:61183575-61183878:-|nuORF ENST00000537641.5_1_11:61183575-61183878:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25457763671875 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 116.53 1 112.17 111.67 112.67 -4.3585 0 0 0 0.23411 1 22434 22434 13.508 0.97634 1 2558 4797 1367 1369 2881 2881 -0.011298866483002712 AFGTAKKRSTH 11 Unmodified _AFGTAKKRSTH_ 0 0 0 REV__nc|ENSG00000138688|Q2LD37-7|BLTP1 REV__nc|ENSG00000138688|Q2LD37-7|BLTP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2837524414062 2 602.333279 1202.652 NaN NaN NaN NaN NaN NaN NaN 163.43 1 158.37 157.87 158.87 -5.0648 0 0 0 0.22632 1 31803 31803 0.11104 0.067254 1 + 2559 16481 1368 1370 2882 2882 0.05878426377489632 AFHPAVAPP 9 Unmodified _AFHPAVAPP_ 0 0 0 nc|ENSG00000123989|Q8IZ52-2|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF;ENSG00000123989|ENST00000243776|CHPF nc|ENSG00000123989|Q8IZ52-2|CHPF nc|ENSG00000123989|Q8IZ52-2|CHPF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75616455078125 2 453.745245 905.475937 NaN NaN NaN NaN NaN NaN NaN 161.42 1 156.25 155.75 156.75 -5.1733 0 0 0 0.19697 1 31350 31350 1.2148 0 1 2560 3287 1369 1371 2883 2883 0.019418369341678954 AFHPEENAQDC 11 Unmodified _AFHPEENAQDC_ 0 0 0 ENST00000541444.5_1_12:1902823-1906819:-|nuORF;ENST00000280663.12_1_12:1902823-1909126:-|nuORF;nc|ENSG00000151062|Q7Z3S7-4|CACNA2D4;ENSG00000151062|ENST00000382722|CACNA2D4 ENST00000541444.5_1_12:1902823-1906819:-|nuORF ENST00000541444.5_1_12:1902823-1906819:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7645263671875 2 630.751127 1259.4877 NaN NaN NaN NaN NaN NaN NaN 93.59 1 89.446 88.946 89.946 -4.1435 0 0 0 0.22632 1 17841 17841 0.03141 0 1 2561 4847 1370 1372 2884 2884 -0.13166378895471098 AFIKSLAV 8 Unmodified _AFIKSLAV_ 0 0 0 REV__SLC25A32|p.A231V|1|0.05|ENSG00000164933|chr8:103401636-103401636|G/A|missense_variant REV__SLC25A32|p.A231V|1|0.05|ENSG00000164933|chr8:103401636-103401636|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2529296875 2 424.765646 847.516739 -0.098141 -4.1687E-05 0.16721 7.1027E-05 0.069073 2.934E-05 424.7656964306026 130.92 0.6907 126.15 125.84 126.53 -4.7725 24 19 2 0 0 0 0.95515 1 25248 25248 15.847 3.3156 1 954210 + 2562 24632 1371 1373 2885 2885 0.08688178253805745 AFISEAKY 8 Unmodified _AFISEAKY_ 0 0 0 ENSG00000078114|ENST00000377122|NEBL;NEBL|p.G91A|1|0.26|ENSG00000078114|chr10:20888194-20888194|C/G|missense_variant ENSG00000078114|ENST00000377122|NEBL ENSG00000078114|ENST00000377122|NEBL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16455078125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 67.206 1 63.71 63.21 64.21 -3.4965 0 0 0 0.23881 1 12605 12605 0.12286 0.11948 1 2563 1568 1372 1374 2886 2886 0.00354693631857117 AFITKFTQ 8 Unmodified _AFITKFTQ_ 0 0 0 REV__ENST00000441645.1_1_2:237317178-237317583:-|nuORF REV__ENST00000441645.1_1_2:237317178-237317583:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7414245605469 2 478.26601 954.517468 NaN NaN NaN NaN NaN NaN NaN 66.757 1 63.43 62.93 63.93 -3.3268 0 0 0 0.20294 1 12575 12575 23.148 2.6948 1 + 2564 21715 1373 1375 2887 2887 0.0383897290286086 AFLAFTIVRAA 11 Unmodified _AFLAFTIVRAA_ 0 0 0 REV__ENSG00000206579|ENST00000327381|XKR4 REV__ENSG00000206579|ENST00000327381|XKR4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2693481445312 2 590.347866 1178.68118 NaN NaN NaN NaN NaN NaN NaN 149.02 1 143.96 143.46 144.46 -5.0595 0 0 0 0.22632 1 28873 28873 0.026206 0.025642 1 + 2565 19626 1374 1376 2888 2888 0.09898570673772156 AFLFPSFPLL 10 Unmodified _AFLFPSFPLL_ 0 0 0 ENST00000282120.6_1_2:85548099-85548267:-|nuORF ENST00000282120.6_1_2:85548099-85548267:-|nuORF ENST00000282120.6_1_2:85548099-85548267:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3287353515625 2 576.328611 1150.64267 0.30686 0.00017685 -3.833 -0.0022091 -3.5262 -0.0020322 576.8272833412773 170.7 0.10555 170.7 170.65 170.76 0 4 2 2 0 0 0 0.47483 1 35125 35125 0.26539 0.2216 1 7684700 2566 8445 1375 1377 2889 2889 0.07337265039222984 AFLGIDSTR 9 Unmodified _AFLGIDSTR_ 0 0 0 ENSG00000198691|ENST00000370225|ABCA4;ABCA4|p.I398Sfs*14|1|0.14|ENSG00000198691|chr1:94079369-94079369|T/-|frameshift_variant ENSG00000198691|ENST00000370225|ABCA4 ENSG00000198691|ENST00000370225|ABCA4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2650451660156 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 61.284 1 61.284 60.784 61.784 0 0 0 0 0.19682 1 11760 11760 2.6312 0 1 2567 7474 1376 1378 2890 2890 0.02332883409144415 AFLILLKY 8 Unmodified _AFLILLKY_ 0 0 0 ENST00000412176.1_1_1:24228945-24229221:-|nuORF;nc|ENSG00000184887|Q96KE9-2|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6;ENSG00000184887|ENST00000392554|BTBD6 ENST00000412176.1_1_1:24228945-24229221:-|nuORF ENST00000412176.1_1_1:24228945-24229221:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2652893066406 2 490.812596 979.61064 0.3453 0.00016948 -0.23092 -0.00011334 0.11438 5.6139E-05 490.8123745536439 102.96 0.59042 98.637 98.288 98.879 -4.3208 34 16 3 0 0 0 1.0244 1 19687 19687 2.8892 0.31174 1 4601600 2568 6938 1377 1379 2891 2891 0.12001897356083191 AFLLNKVV 8 Unmodified _AFLLNKVV_ 0 0 0 REV__ENSG00000120800|ENST00000261637|UTP20 REV__ENSG00000120800|ENST00000261637|UTP20 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 452.2598571777344 2 452.286746 902.558939 0.22771 0.00010299 0.2074 9.3806E-05 0.43511 0.0001968 452.28655453506434 28.511 0.27416 26.756 26.531 26.805 -1.7552 10 7 2 0 0 0 0.89712 1 4789 4789 0.063987 0.063987 1 188120 + 2569 15634 1378 1380 2892 2892 0.10376153662195975 AFLPYAAEL 9 Unmodified _AFLPYAAEL_ 0 0 0 IRX3|p.G242Afs*18|1|0.3|ENSG00000177508|chr16:54285156-54285156|C/-|frameshift_variant;IRX3|p.E236Rfs*24|1|0.28|ENSG00000177508|chr16:54285175-54285175|C/-|frameshift_variant;ENSG00000177508|ENST00000329734|IRX3 IRX3|p.G242Afs*18|1|0.3|ENSG00000177508|chr16:54285156-54285156|C/-|frameshift_variant IRX3|p.G242Afs*18|1|0.3|ENSG00000177508|chr16:54285156-54285156|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.0054931640625 3 332.179654 993.517133 -0.31046 -0.00010313 0.22599 7.507E-05 -0.08447 -2.8059E-05 332.1797097976868 91.832 0.50893 87.907 87.581 88.09 -3.9251 23 14 2 0 0 0 0.88284 1 17936 17936 2.4985 2.4985 1 1765600 2570 6518 1379 1381 2893 2893 0.02011553182978787 AFLPYAAEL 9 Unmodified _AFLPYAAEL_ 0 0 0 IRX3|p.G242Afs*18|1|0.3|ENSG00000177508|chr16:54285156-54285156|C/-|frameshift_variant;IRX3|p.E236Rfs*24|1|0.28|ENSG00000177508|chr16:54285175-54285175|C/-|frameshift_variant;ENSG00000177508|ENST00000329734|IRX3 IRX3|p.G242Afs*18|1|0.3|ENSG00000177508|chr16:54285156-54285156|C/-|frameshift_variant IRX3|p.G242Afs*18|1|0.3|ENSG00000177508|chr16:54285156-54285156|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.00518798828125 3 332.179654 993.517133 0.28895 9.5982E-05 -0.26406 -8.7716E-05 0.024884 8.266E-06 332.1795312028057 92.028 0.59192 87.933 87.633 88.224 -4.0946 27 16 2 0 0 0 0.78323 1 17582 17582 2.4985 1.0166 1 1703300 2571 6518 1379 1381 2894 2894 0.02011553182978787 AFLQLQESST 10 Unmodified _AFLQLQESST_ 0 0 0 REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70 REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2124328613281 3 375.192511 1122.5557 NaN NaN NaN NaN NaN NaN NaN 85.14 1 81.429 80.929 81.929 -3.7117 0 0 0 2.8426 1 16265 16265 6.6304 0 1 + 2572 17241 1380 1382 2895 2895 -0.0006718597312556085 AFLSASDLR 9 Unmodified _AFLSASDLR_ 0 0 0 nc|ENSG00000167394|Q96K58-2|ZNF668;ENSG00000167394|ENST00000300849|ZNF668 nc|ENSG00000167394|Q96K58-2|ZNF668 nc|ENSG00000167394|Q96K58-2|ZNF668 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2641906738281 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 48.48 1 48.48 47.98 48.98 0 0 0 0 0.16777 1 9156 9156 22.736 5.6234 1 2573 5807 1381 1383 2896 2896 0.02332883409144415 AFLSGNWY 8 Unmodified _AFLSGNWY_ 0 0 0 ENST00000526094.5_1_17:42295651-42295777:-|nuORF ENST00000526094.5_1_17:42295651-42295777:-|nuORF ENST00000526094.5_1_17:42295651-42295777:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7224426269531 2 479.226885 956.439217 -0.63351 -0.00030359 -0.037993 -1.8207E-05 -0.6715 -0.0003218 479.2268060072708 22.109 0.20442 20.388 20.255 20.46 -1.7211 8 5 2 0 0 0 0.98676 1 3504 3504 15.847 1.0089 1 202420 2574 10910 1382 1384 2897 2897 -0.04074459682385623 AFMECCCCCCE 11 Unmodified _AFMECCCCCCE_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7620849609375 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 52.173 1 49.29 48.79 49.79 -2.8824 0 0 0 0.22632 1 9924 9924 0.094841 0.094841 1 2575 6095 1383 1385 2898 2898 -0.31504650452575333 AFNQSSTLNL 10 Unmodified _AFNQSSTLNL_ 0 0 0 nc|ENSG00000250312|Q3SXZ3-2|ZNF718;ENSG00000250312|ENST00000510175|ZNF718 nc|ENSG00000250312|Q3SXZ3-2|ZNF718 nc|ENSG00000250312|Q3SXZ3-2|ZNF718 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7898559570312 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 113.61 1 109.34 108.84 109.84 -4.2725 0 0 0 0.22588 1 21879 21879 9.3831 1.473 1 2576 7903 1384 1386 2899 2899 -0.0026405277033063612 AFPSLVRLWR 10 Unmodified _AFPSLVRLWR_ 0 0 0 REV__ENSG00000128908|ENST00000648947|INO80 REV__ENSG00000128908|ENST00000648947|INO80 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7675170898438 2 622.866757 1243.71896 NaN NaN NaN NaN NaN NaN NaN 62.695 1 59.279 58.779 59.779 -3.4158 0 0 0 2.8426 1 11706 11706 0.0013812 0 1 + 2577 15939 1385 1387 2900 2900 0.10685081659198659 AFQGKIDAAY 10 Unmodified _AFQGKIDAAY_ 0 0 0 ENSG00000126216|ENST00000261965|TUBGCP3;nc|ENSG00000126216|Q96CW5-2|TUBGCP3 ENSG00000126216|ENST00000261965|TUBGCP3 ENSG00000126216|ENST00000261965|TUBGCP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7811279296875 2 542.277106 1082.53966 0.067677 3.67E-05 0.046404 2.5164E-05 0.11408 6.1864E-05 542.2770837600181 51.021 0.73688 47.975 47.631 48.368 -3.0453 62 20 4 0 0 0 0.59928 1 9372 9372 19.257 0 1 15246000 2578 3418 1386 1388 2901 2901 0.0016915258061089844 AFRKDPKDF 9 Unmodified _AFRKDPKDF_ 0 0 0 CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229 CON__Q3MHN5 CON__Q3MHN5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2207336425781 3 375.201341 1122.58219 NaN NaN NaN NaN NaN NaN NaN 100.18 1 100.18 99.683 100.68 0 0 0 0 0.23508 1 19654 19654 2.7352 0 1 + 2579 641 1387 1389 2902 2902 0.02580547708839731 AFRSWTKKQ 9 Unmodified _AFRSWTKKQ_ 0 0 0 PHF2|p.K492Rfs*6|1|0.4|ENSG00000197724|chr9:93660330-93660330|A/-|frameshift_variant;PHF2|p.K492Dfs*21|1|0.2|ENSG00000197724|chr9:93660330-93660331|AA/-|frameshift_variant;PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant;ENSG00000197724|ENST00000359246|PHF2 PHF2|p.K492Rfs*6|1|0.4|ENSG00000197724|chr9:93660330-93660330|A/-|frameshift_variant PHF2|p.K492Rfs*6|1|0.4|ENSG00000197724|chr9:93660330-93660330|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3222045898438 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 20.604 1 19.22 18.72 19.72 -1.3847 0 0 0 0.19626 1 3204 3204 0.40827 0.36448 1 2580 7393 1388 1390 2903 2903 0.055439428370846144 AFSLVAAP 8 Unmodified _AFSLVAAP_ 0 0 0 nc|ENSG00000140488|Q96J87-4|CELF6;nc|ENSG00000140488|Q96J87-2|CELF6;nc|ENSG00000140488|Q96J87-3|CELF6;ENSG00000140488|ENST00000287202|CELF6 nc|ENSG00000140488|Q96J87-4|CELF6 nc|ENSG00000140488|Q96J87-4|CELF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 388.1972351074219 2 388.221072 774.42759 -0.14741 -5.7229E-05 0.23672 9.1901E-05 0.08931 3.4672E-05 388.221078882865 62.975 0.61325 60.003 59.731 60.344 -2.9713 24 17 2 0 0 0 0.55462 1 12182 12182 9.544 0 1 1197000 2581 4305 1389 1391 2904 2904 0.03135343294275117 AFSLVAAP 8 Unmodified _AFSLVAAP_ 0 0 0 nc|ENSG00000140488|Q96J87-4|CELF6;nc|ENSG00000140488|Q96J87-2|CELF6;nc|ENSG00000140488|Q96J87-3|CELF6;ENSG00000140488|ENST00000287202|CELF6 nc|ENSG00000140488|Q96J87-4|CELF6 nc|ENSG00000140488|Q96J87-4|CELF6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 388.221072 774.42759 -0.39954 -0.00015511 0.66069 0.00025649 0.26115 0.00010138 388.22127481080804 60.13 0.45067 60.13 59.93 60.381 0 0.070617 0.00012427 NaN 9.544 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1270800 2582 4305 1389 1391 0.03135343294275117 AFSLVAAP 8 Unmodified _AFSLVAAP_ 0 0 0 nc|ENSG00000140488|Q96J87-4|CELF6;nc|ENSG00000140488|Q96J87-2|CELF6;nc|ENSG00000140488|Q96J87-3|CELF6;ENSG00000140488|ENST00000287202|CELF6 nc|ENSG00000140488|Q96J87-4|CELF6 nc|ENSG00000140488|Q96J87-4|CELF6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 388.221072 774.42759 -0.38673 -0.00015014 0.65901 0.00025584 0.27228 0.0001057 388.22125597066196 63.302 0.5535 60.045 59.709 60.263 -3.2567 -0.014415 0.00012296 NaN 9.544 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 996060 2583 4305 1389 1391 0.03135343294275117 AFVEEKAPA 9 Unmodified _AFVEEKAPA_ 0 0 0 ENSG00000166192|ENST00000340912|SENP8 ENSG00000166192|ENST00000340912|SENP8 ENSG00000166192|ENST00000340912|SENP8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2529296875 2 481.2531 960.491647 0.054447 2.6203E-05 0.44289 0.00021314 0.49734 0.00023935 481.2532559292357 65.088 1.1882 62.041 61.522 62.71 -3.047 72 34 3 0 0 0 0.11828 1 12565 12565 49.554 3.5333 1 3888300 2584 5700 1390 1392 2905 2905 0.009820786605587273 AFVKMCIE 8 Unmodified _AFVKMCIE_ 0 0 0 REV__sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1 REV__sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.138916015625 3 314.159208 939.455795 NaN NaN NaN NaN NaN NaN NaN 85.414 1 81.505 81.005 82.005 -3.9093 0 0 0 0.21486 1 16244 16244 1.6526 0.45928 1 + 2585 24685 1391 1393 2906 2906 -0.01635418112300613 AFYAKLHG 8 Unmodified _AFYAKLHG_ 0 0 0 REV__nc|ENSG00000138756|Q9NSY1-2|BMP2K REV__nc|ENSG00000138756|Q9NSY1-2|BMP2K MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75885009765625 2 453.745245 905.475937 NaN NaN NaN NaN NaN NaN NaN 90.857 1 87.079 86.579 87.579 -3.7779 0 0 0 0.2343 1 17390 17390 0.25148 0.12861 1 + 2586 24065 1392 1394 2907 2907 0.01941836934179264 AFYPAPQY 8 Unmodified _AFYPAPQY_ 0 0 0 REV__ENSG00000174016|ENST00000308293|TENT5D REV__ENSG00000174016|ENST00000308293|TENT5D MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7297668457031 2 478.729261 955.443968 NaN NaN NaN NaN NaN NaN NaN 75.457 1 71.734 71.234 72.234 -3.7227 0 0 0 0.21486 1 14272 14272 10.183 0 1 + 2587 18388 1393 1395 2908 2908 -0.03553575539626763 AGAEPELFK 9 Unmodified _AGAEPELFK_ 0 0 0 ENSG00000176160|ENST00000323777|HSF5;HSF5|p.H238Lfs*84|1|0.04|ENSG00000176160|chr17:58480102-58480105|GGAT/-|frameshift_variant ENSG00000176160|ENST00000323777|HSF5 ENSG00000176160|ENST00000323777|HSF5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.1713562011719 3 321.171159 960.491647 NaN NaN NaN NaN NaN NaN NaN 15.318 1 14.204 13.704 14.704 -1.1142 0 0 0 0.19657 1 2354 2354 4.897 4.2702 1 2588 6452 1394 1396 2909 2909 0.00982078660570096 AGAERPGPQAQ 11 Unmodified _AGAERPGPQAQ_ 0 0 0 REV__ENST00000599594.1_1_19:41188932-41196472:-|nuORF REV__ENST00000599594.1_1_19:41188932-41196472:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2731323242188 2 541.272887 1080.53122 NaN NaN NaN NaN NaN NaN NaN 158.73 1 153.94 153.44 154.44 -4.7952 0 0 0 0.22632 1 31567 31567 0.03141 0 1 + 2589 23403 1395 1397 2910 2910 -0.005824013360097524 AGAGEDSPGRN 11 Unmodified _AGAGEDSPGRN_ 0 0 0 ENST00000484669.6_1_1:6685268-6693134:+|nuORF;ENST00000487819.5_2_1:6688710-6693134:+|nuORF;nc|ENSG00000041988|Q8WTV1-3|THAP3;ENSG00000041988|ENST00000054650|THAP3;nc|ENSG00000041988|Q8WTV1-4|THAP3 ENST00000484669.6_1_1:6685268-6693134:+|nuORF ENST00000484669.6_1_1:6685268-6693134:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.28759765625 3 344.15646 1029.44755 NaN NaN NaN NaN NaN NaN NaN 4.4248 1 4.4248 3.9248 4.9248 0 0 0 0 0.23698 1 84 84 0.094841 0.094841 1 2590 1198 1396 1398 2911 2911 -0.06599557503705 AGAGGVPV 8 Unmodified _AGAGGVPV_ 0 0 0 ENST00000423007.5_1_9:134378335-134378638:+|nuORF ENST00000423007.5_1_9:134378335-134378638:+|nuORF ENST00000423007.5_1_9:134378335-134378638:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.16778564453125 2 314.176664 626.338775 NaN NaN NaN NaN NaN NaN NaN 117.1 1 112.74 112.24 113.24 -4.3585 0 0 0 0.21486 1 22541 22541 6.3541 3.4649 1 2591 9686 1397 1399 2912 2912 0.010659280546178707 AGARLAWRY 9 Unmodified _AGARLAWRY_ 0 0 0 REV__ENST00000474787.1_1_9:139974763-139976621:+|nuORF REV__ENST00000474787.1_1_9:139974763-139976621:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.1859130859375 3 355.198042 1062.5723 -0.30899 -0.00010975 -0.84037 -0.0002985 -1.1494 -0.00040825 355.1976791022398 44.5 0.56406 41.71 41.425 41.989 -2.79 47 15 4 0 0 0 0.73309 1 8393 8393 2.7352 0.45242 1 11913000 + 2592 19328 1398 1400 2913 2913 0.04351404494127564 AGARLAWRY 9 Unmodified _AGARLAWRY_ 0 0 0 REV__ENST00000474787.1_1_9:139974763-139976621:+|nuORF REV__ENST00000474787.1_1_9:139974763-139976621:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 355.198042 1062.5723 -0.069048 -2.4526E-05 -1.1834 -0.00042034 -1.2525 -0.00044487 355.1975750487377 41.798 0.57004 41.798 41.513 42.083 0 0.051912 -0.0002446 NaN 2.7352 46 15 4 NaN NaN NaN NaN 0 NaN NaN 0 10611000 + 2593 19328 1398 1400 0.04351404494127564 AGARLAWRY 9 Unmodified _AGARLAWRY_ 0 0 0 REV__ENST00000474787.1_1_9:139974763-139976621:+|nuORF REV__ENST00000474787.1_1_9:139974763-139976621:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 355.198042 1062.5723 -0.30899 -0.00010975 -0.84037 -0.0002985 -1.1494 -0.00040825 355.1976791022398 44.5 0.56406 41.71 41.425 41.989 -2.79 -0.036172 0.00012094 NaN 2.7352 47 15 4 NaN NaN NaN NaN 0 NaN NaN 0 11913000 + 2594 19328 1398 1400 0.04351404494127564 AGARLAWRY 9 Unmodified _AGARLAWRY_ 0 0 0 REV__ENST00000474787.1_1_9:139974763-139976621:+|nuORF REV__ENST00000474787.1_1_9:139974763-139976621:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 355.198042 1062.5723 -0.029135 -1.0349E-05 -1.2331 -0.000438 -1.2623 -0.00044835 355.19755019422536 44.497 0.69109 41.731 41.394 42.085 -2.7661 -0.015352 -0.00029758 NaN 2.7352 54 19 4 NaN NaN NaN NaN 0 NaN NaN 0 9705500 + 2595 19328 1398 1400 0.04351404494127564 AGARLAWRY 9 Unmodified _AGARLAWRY_ 0 0 0 REV__ENST00000474787.1_1_9:139974763-139976621:+|nuORF REV__ENST00000474787.1_1_9:139974763-139976621:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 355.198042 1062.5723 -0.77212 -0.00027426 -0.56339 -0.00020012 -1.3355 -0.00047437 355.1977848840275 44.493 0.63446 41.746 41.43 42.064 -2.7475 -0.00038818 0.00041609 NaN 2.7352 53 17 4 NaN NaN NaN NaN 0 NaN NaN 0 9671900 + 2596 19328 1398 1400 0.04351404494127564 AGDAGNYSCMY 11 Unmodified _AGDAGNYSCMY_ 0 0 0 ENSG00000248385|ENST00000432826|TARM1;nc|ENSG00000248385|B6A8C7-2|TARM1 ENSG00000248385|ENST00000432826|TARM1 ENSG00000248385|ENST00000432826|TARM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3194580078125 2 576.210249 1150.40594 NaN NaN NaN NaN NaN NaN NaN 41.131 1 41.131 40.631 41.631 0 0 0 0 0.23634 1 7667 7667 3.2813 0.70383 1 2597 7892 1399 1401 2914 2914 -0.1632419757891057 AGDEGRVLL 9 Unmodified _AGDEGRVLL_ 0 0 0 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.255859375 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 70.843 1 70.843 70.343 71.343 0 0 0 0 0.089844 1 13724 13724 40.239 8.9709 1 2598 11805 1400 1402 2915 2915 0.03068596892092046 AGDEGRVLL 9 Unmodified _AGDEGRVLL_ 0 0 0 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25628662109375 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 71.075 1 71.075 70.575 71.575 0 0 0 0 0.1736 1 13765 13765 27.223 2.5493 1 2599 11805 1400 1402 2916 2916 0.03068596892092046 AGDEGRVLL 9 Unmodified _AGDEGRVLL_ 0 0 0 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25677490234375 2 465.256174 928.497795 -0.14917 -6.9401E-05 0.75755 0.00035245 0.60838 0.00028305 465.2564915313815 74.062 0.47903 70.697 70.403 70.882 -3.3643 16 13 2 0 0 0 0.10083 2 14416 14416;14463 55.503 9.8031 1 999310 2600 11805 1400 1402 2917;2918 2917 0.03068596892092046 AGDEGRVLL 9 Unmodified _AGDEGRVLL_ 0 0 0 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2563171386719 2 465.256174 928.497795 0.14629 6.8062E-05 0.13038 6.0658E-05 0.27667 0.00012872 465.2561944195319 74.319 0.41614 70.642 70.45 70.866 -3.6764 17 11 2 0 0 0 0.10699 1 14058 14058 53.404 7.7044 1 861020 2601 11805 1400 1402 2919 2919 0.03068596892092046 AGDEGRVLL 9 Unmodified _AGDEGRVLL_ 0 0 0 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2568054199219 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 74.13 1 70.454 69.954 70.954 -3.6764 0 0 0 0.12773 1 14019 14019 33.445 8.4539 1 2602 11805 1400 1402 2920 2920 0.03068596892092046 AGDEGRVLL 9 Unmodified _AGDEGRVLL_ 0 0 0 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25640869140625 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 74.227 1 70.633 70.133 71.133 -3.594 0 0 0 0.060013 1 14096 14096 47.594 9.4188 1 2603 11805 1400 1402 2921 2921 0.03068596892092046 AGDSQHSSEE 10 Unmodified _AGDSQHSSEE_ 0 0 0 REV__ENST00000505506.1_1_4:9997497-10020676:-|nuORF REV__ENST00000505506.1_1_4:9997497-10020676:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6809692382812 2 523.704699 1045.39485 NaN NaN NaN NaN NaN NaN NaN 77.937 1 74.474 73.974 74.974 -3.4633 0 0 0 0.22588 1 15217 15217 10.151 0.80313 1 + 2604 22476 1401 1403 2922 2922 -0.1260356035716086 AGDTPTSASAP 11 Unmodified _AGDTPTSASAP_ 0 0 0 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 488.2249755859375 2 487.724904 973.435254 0.25355 0.00012366 -1.9265 -0.00093962 -1.673 -0.00081595 487.72369543090815 152.47 0.38649 147.72 147.53 147.92 -4.7523 17 10 2 0 0 0 0.65671 1 30324 30324 0.03141 0 1 759690 + 2605 15857 1402 1404 2923 2923 -0.05252593966758923 AGDTRPRF 8 Unmodified _AGDTRPRF_ 0 0 0 ENSG00000198502|ENST00000374975|HLA-DRB5 ENSG00000198502|ENST00000374975|HLA-DRB5 ENSG00000198502|ENST00000374975|HLA-DRB5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2400207519531 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 53.239 1 53.239 52.739 53.739 0 0 0 0 0.22647 1 10134 10134 9.544 5.9569 1 2606 7457 1403 1405 2924 2924 0.004668632977086418 AGEDGVRNG 9 Unmodified _AGEDGVRNG_ 0 0 0 REV__ENSG00000167207|ENST00000647318|NOD2 REV__ENSG00000167207|ENST00000647318|NOD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.7060241699219 2 437.704306 873.394058 NaN NaN NaN NaN NaN NaN NaN 42.401 1 39.795 39.295 40.295 -2.606 0 0 0 0.23508 1 7626 7626 7.9102 1.187 1 + 2607 17909 1404 1406 2925 2925 -0.04770310215576501 AGEDPWYRDC 10 Unmodified _AGEDPWYRDC_ 0 0 0 REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 607.8856201171875 2 606.242938 1210.47132 0.39567 0.00023987 0.50678 0.00030723 0.90245 0.0005471 606.2431986146673 56.635 0.83969 53.446 53.158 53.998 -3.1895 62 23 4 0 0 0 0.75565 1 10479 10479 3.9444 0.94915 1 21518000 + 2608 14103 1405 1407 2926 2926 -0.1254946006154114 AGEDPWYRDC 10 Unmodified _AGEDPWYRDC_ 0 0 0 REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 606.242938 1210.47132 0.79172 0.00047998 -0.0078211 -4.7415E-06 0.7839 0.00047523 606.2429399545962 56.399 0.78927 53.504 53.099 53.888 -2.8944 0.07044 -0.00042837 NaN 3.9444 64 22 4 NaN NaN NaN NaN 0 NaN NaN 0 19810000 + 2609 14103 1405 1407 -0.1254946006154114 AGEDPWYRDC 10 Unmodified _AGEDPWYRDC_ 0 0 0 REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 606.242938 1210.47132 0.13078 7.9286E-05 0.5717 0.00034659 0.70248 0.00042588 606.2433091097419 56.527 0.77851 53.351 53.154 53.932 -3.1761 -0.082481 0.00027429 NaN 3.9444 62 21 4 NaN NaN NaN NaN 0 NaN NaN 0 22517000 + 2610 14103 1405 1407 -0.1254946006154114 AGEDTIYQGL 10 Unmodified _AGEDTIYQGL_ 0 0 0 ENST00000506893.1_1_5:43644868-43645650:+|nuORF ENST00000506893.1_1_5:43644868-43645650:+|nuORF ENST00000506893.1_1_5:43644868-43645650:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2826538085938 2 533.756204 1065.49785 0.11631 6.208E-05 -1.1705 -0.00062477 -1.0542 -0.00056269 533.7555175251576 95.12 0.56049 91.07 90.744 91.304 -4.0496 22 15 2 0 0 0 0.70987 1 18614 18614 24.021 0 1 2392600 2611 10687 1406 1408 2927 2927 -0.03227447898552782 AGEKGNPG 8 Unmodified _AGEKGNPG_ 0 0 0 nc|ENSG00000197467|Q5TAT6-3|COL13A1;nc|ENSG00000197467|Q5TAT6-8|COL13A1;nc|ENSG00000197467|Q5TAT6-7|COL13A1;nc|ENSG00000197467|Q5TAT6-2|COL13A1;nc|ENSG00000197467|Q5TAT6-6|COL13A1;nc|ENSG00000197467|Q5TAT6|COL13A1;ENSG00000197467|ENST00000645393|COL13A1 nc|ENSG00000197467|Q5TAT6-3|COL13A1 nc|ENSG00000197467|Q5TAT6-3|COL13A1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.1790466308594 2 365.179935 728.345317 NaN NaN NaN NaN NaN NaN NaN 25.55 1 23.902 23.402 24.402 -1.6482 0 0 0 0.23366 1 4484 4484 0.25148 0.12861 1 2612 7369 1407 1409 2928 2928 -0.02972178784659718 AGEQPLEPEQF 11 Unmodified _AGEQPLEPEQF_ 0 0 0 ENSG00000176681|ENST00000320254|LRRC37A;ENSG00000238083|ENST00000576629|LRRC37A2 ENSG00000176681|ENST00000320254|LRRC37A ENSG00000176681|ENST00000320254|LRRC37A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7705688476562 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 94.566 1 90.375 89.875 90.875 -4.1911 0 0 0 0.15347 1 18039 18039 27.629 6.0918 1 2613 6481 1408 1410 2929 2929 -0.039961048070381366 AGESKALGGAT 11 Unmodified _AGESKALGGAT_ 0 0 0 ENSG00000178171|ENST00000321420|AMER3 ENSG00000178171|ENST00000321420|AMER3 ENSG00000178171|ENST00000321420|AMER3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24859619140625 2 481.251089 960.487624 0.08258 3.9742E-05 -0.81517 -0.0003923 -0.73259 -0.00035256 481.2505084892255 37.909 2.4506 37.909 36.887 39.338 0 134 69 4 0 0 0 0.16952 1 6954 6954 2.732 0 1 99259000 2614 6562 1409 1411 2930 2930 0.0057998916687438395 AGEYWYVQND 10 Unmodified _AGEYWYVQND_ 0 0 0 REV__nc|ENSG00000188467|Q71RS6-2|SLC24A5 REV__nc|ENSG00000188467|Q71RS6-2|SLC24A5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7672119140625 2 622.76456 1243.51457 NaN NaN NaN NaN NaN NaN NaN 37.225 1 37.225 36.725 37.725 0 0 0 0 2.8426 1 6879 6879 0.69767 0.69429 1 + 2615 19147 1410 1412 2931 2931 -0.0974494701263211 AGFSFAGT 8 Unmodified _AGFSFAGT_ 0 0 0 REV__nc|ENSG00000272391|A8CG34|POM121C;REV__nc|ENSG00000205578|A6NF01|POM121B REV__nc|ENSG00000272391|A8CG34|POM121C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 379.6728820800781 2 379.179404 756.344254 0.19297 7.3172E-05 0.75987 0.00028813 0.95284 0.0003613 379.180418735494 177.81 0.88228 172.94 172.07 172.95 -4.8686 34 24 3 0 0 0 8448 1 35392 35392 1.3295 0 1 4011400 + 2616 24304;24243 1411 1413 2932 2932 -0.04366393153554782 AGFVMGWLKD 10 Unmodified _AGFVMGWLKD_ 0 0 0 REV__SMCHD1|p.R1887W|1|0.32|ENSG00000101596|chr18:2784561-2784561|C/T|missense_variant REV__SMCHD1|p.R1887W|1|0.32|ENSG00000101596|chr18:2784561-2784561|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.20550537109375 3 375.191677 1122.5532 NaN NaN NaN NaN NaN NaN NaN 85.411 1 81.501 81.001 82.001 -3.9093 0 0 0 0.22588 1 16243 16243 6.1918 1.663 1 + 2617 24657 1412 1414 2933 2933 -0.00317312911784029 AGGDGGCCC 9 Unmodified _AGGDGGCCC_ 0 0 0 REV__ENST00000431489.5_1_2:62932928-62934072:+|nuORF REV__ENST00000431489.5_1_2:62932928-62934072:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3692626953125 1 742.195306 741.18803 0.43321 0.00032153 -0.69552 -0.00051621 -0.26231 -0.00019469 742.1956407666528 115.16 0.35986 110.6 110.29 110.65 -4.555 10 9 2 0 0 0 0.82535 1 22056 22056 0.6015 0.6015 1 1701500 + 2618 21620 1413 1415 2934 2934 -0.19291665982359518 AGGFHGIY 8 Unmodified _AGGFHGIY_ 0 0 0 SLC25A26|p.F68Lfs*7|1|0.36|ENSG00000144741|chr3:66243211-66243211|T/-|frameshift_variant;ENSG00000144741|ENST00000354883|SLC25A26 SLC25A26|p.F68Lfs*7|1|0.36|ENSG00000144741|chr3:66243211-66243211|T/-|frameshift_variant SLC25A26|p.F68Lfs*7|1|0.36|ENSG00000144741|chr3:66243211-66243211|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1996765136719 2 411.20067 820.386788 NaN NaN NaN NaN NaN NaN NaN 107.32 1 103 102.5 103.5 -4.32 0 0 0 0.23294 1 21134 21134 0.68139 0 1 2619 4575 1414 1416 2935 2935 -0.03058998025346682 AGGGRGHINTF 11 Unmodified _AGGGRGHINTF_ 0 0 0 REV__nc|ENSG00000159403|P00736|C1R REV__nc|ENSG00000159403|P00736|C1R MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.793701171875 2 543.775597 1085.53664 0.0011878 6.4589E-07 0.74595 0.00040563 0.74714 0.00040628 543.7760461776153 68.173 0.89421 68.173 67.79 68.684 0 57 24 3 0 0 0 0.7348 1 13281 13281 9.3831 0 1 4072400 + 2620 17371 1415 1417 2936 2936 -0.002706777535195215 AGGQPWPGSV 10 Unmodified _AGGQPWPGSV_ 0 0 0 REV__ENST00000272117.7_1_1:226821510-226821579:-|nuORF REV__ENST00000272117.7_1_1:226821510-226821579:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.726806640625 2 478.235242 954.45593 0.16214 7.7539E-05 0.0039058 1.8679E-06 0.16604 7.9407E-05 478.23526125131065 97.889 0.89758 93.62 93.089 93.987 -4.2692 42 25 2 0 0 0 0.36162 1 18648 18648 5.8681 5.2413 1 3150800 + 2621 20275 1416 1418 2937 2937 -0.023119587964288257 AGGRGFGK 8 Unmodified _AGGRGFGK_ 0 0 0 REV__ENST00000496700.5_1_14:105954601-105954845:+|nuORF REV__ENST00000496700.5_1_14:105954601-105954845:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2136535644531 2 375.206287 748.398021 NaN NaN NaN NaN NaN NaN NaN 46.23 1 43.363 42.863 43.863 -2.8666 0 0 0 0.23782 1 8410 8410 0.62683 0.50396 1 + 2622 19635 1417 1419 2938 2938 0.013758240688048318 AGGSHCHP 8 Unmodified _AGGSHCHP_ 0 0 0 ENST00000478678.5_1_6:32154995-32157692:-|nuORF ENST00000478678.5_1_6:32154995-32157692:-|nuORF ENST00000478678.5_1_6:32154995-32157692:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 383.1988830566406 2 383.15848 764.302406 NaN NaN NaN NaN NaN NaN NaN 35.615 1 35.615 35.115 36.115 0 0 0 0 0.21486 1 6543 6543 2.8892 0.58649 1 2623 10325 1418 1420 2939 2939 -0.08917272113751551 AGHGGLVPLF 10 Unmodified _AGHGGLVPLF_ 0 0 0 REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1836853027344 3 323.18351 966.528701 NaN NaN NaN NaN NaN NaN NaN 140.05 1 135.4 134.9 135.9 -4.6439 0 0 0 0.22588 1 27651 27651 0.77653 0.31819 1 + 2624 22263 1419 1421 2940 2940 0.04409794996990968 AGHVQLKP 8 Unmodified _AGHVQLKP_ 0 0 0 REV__ENSG00000158683|ENST00000289672|PKD1L1 REV__ENSG00000158683|ENST00000289672|PKD1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 12.911 1 12.911 12.411 13.411 0 0 0 0 0.2396 1 1831 1831 0.0082765 0 1 + 2625 17342 1420 1422 2941 2941 0.056532393084808064 AGHVQLKP 8 Unmodified _AGHVQLKP_ 0 0 0 REV__ENSG00000158683|ENST00000289672|PKD1L1 REV__ENSG00000158683|ENST00000289672|PKD1L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25244140625 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 175.86 1 170.99 170.49 171.49 -4.8739 0 0 0 0.21486 1 34973 34973 0.79363 0 1 + 2626 17342 1420 1422 2942 2942 0.056532393084808064 AGHVQLKP 8 Unmodified _AGHVQLKP_ 0 0 0 REV__ENSG00000158683|ENST00000289672|PKD1L1 REV__ENSG00000158683|ENST00000289672|PKD1L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2523498535156 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 176.07 1 171.19 170.69 171.69 -4.8739 0 0 0 0.21486 1 35016 35016 0.79363 0 1 + 2627 17342 1420 1422 2943 2943 0.056532393084808064 AGHVQLKP 8 Unmodified _AGHVQLKP_ 0 0 0 REV__ENSG00000158683|ENST00000289672|PKD1L1 REV__ENSG00000158683|ENST00000289672|PKD1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25189208984375 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 109.44 1 105.26 104.76 105.76 -4.1826 0 0 0 0.23749 1 21062 21062 0.063987 0 1 + 2628 17342 1420 1422 2944 2944 0.056532393084808064 AGICHKVST 9 Unmodified _AGICHKVST_ 0 0 0 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.239013671875 2 458.23947 914.464386 -0.20427 -9.3602E-05 0.23891 0.00010948 0.034641 1.5874E-05 458.239289981689 57.586 0.94844 54.691 54.27 55.219 -2.8944 47 26 3 0 0 0 0.52414 1 11120 11120 18.135 1.1927 1 1166400 2629 6444 1421 1423 2945 2945 0.003732718485366604 AGICHKVST 9 Unmodified _AGICHKVST_ 0 0 0 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2386169433594 2 458.23947 914.464386 0.082304 3.7715E-05 1.1086 0.00050802 1.1909 0.00054573 458.2388664200974 58.406 0.13595 55.201 55.128 55.264 -3.2052 5 3 2 0 0 0 0.52414 1 10905 10905 18.135 1.1927 1 265810 2630 6444 1421 1423 2946 2946 0.003732718485366604 AGKGGKGL 8 Unmodified _AGKGGKGL_ 0 0 0 REV__ENST00000310512.3_1_7:100027461-100027629:+|nuORF REV__ENST00000310512.3_1_7:100027461-100027629:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.8266296386719 2 344.211038 686.407523 -0.17889 -6.1577E-05 0.30629 0.00010543 0.12739 4.3849E-05 344.2110445381923 40.608 0.35438 40.608 40.424 40.778 0 13 9 2 0 0 0 0.88445 1 7576 7576 1.7423 0 1 1353100 + 2631 20478 1422 1424 2947 2947 0.05177592354323224 AGKPGKAG 8 Unmodified _AGKPGKAG_ 0 0 0 COL2A1|p.Q479Rfs*150|1|0.18|ENSG00000139219|chr12:47986428-47986428|G/-|frameshift_variant;COL2A1|p.G741Wfs*29|1|0.36|ENSG00000139219|chr12:47982583-47982584|-/G|frameshift_variant;COL2A1|p.P917Lfs*111|2|0.33|ENSG00000139219|chr12:47978742-47978742|G/-|frameshift_variant;COL2A1|p.P1046Lfs*84|1|0.13|ENSG00000139219|chr12:47977628-47977628|G/-|frameshift_variant;nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1 COL2A1|p.Q479Rfs*150|1|0.18|ENSG00000139219|chr12:47986428-47986428|G/-|frameshift_variant COL2A1|p.Q479Rfs*150|1|0.18|ENSG00000139219|chr12:47986428-47986428|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.1802978515625 2 343.203213 684.391873 NaN NaN NaN NaN NaN NaN NaN 64.103 1 64.103 63.603 64.603 0 0 0 0 0.23782 1 12338 12338 0.25148 0 1 2632 626 1423 1425 2948 2948 0.03705305837274864 AGKWTQWPL 9 Unmodified _AGKWTQWPL_ 0 0 0 ENST00000293725.9_1_19:12433494-12444388:-|nuORF ENST00000293725.9_1_19:12433494-12444388:-|nuORF ENST00000293725.9_1_19:12433494-12444388:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.788818359375 2 543.790184 1085.56581 NaN NaN NaN NaN NaN NaN NaN 140.16 1 140.16 139.66 140.66 0 0 0 0 0.19646 1 27889 27889 1.2148 0 1 2633 8483 1424 1426 2949 2949 0.026454665427536384 AGLAHYDAP 9 Unmodified _AGLAHYDAP_ 0 0 0 REV__ENSG00000175040|ENST00000309575|CHST2 REV__ENSG00000175040|ENST00000309575|CHST2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2234802246094 2 457.721967 913.429381 0.13073 5.9836E-05 0.04076 1.8657E-05 0.17149 7.8493E-05 457.72191262901134 55.684 0.71173 55.684 55.369 56.081 0 33 19 2 0 0 0 0.41781 1 10623 10623 24.674 5.2349 1 1614800 + 2634 18446 1425 1427 2950 2950 -0.030796476877753776 AGLATSPINA 10 Unmodified _AGLATSPINA_ 0 0 0 REV__ENST00000585457.5_1_17:42255025-42255136:-|nuORF REV__ENST00000585457.5_1_17:42255025-42255136:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22802734375 2 457.750724 913.486896 0.061808 2.8293E-05 0.55368 0.00025345 0.61549 0.00028174 457.7508850634773 26.007 0.82844 24.372 23.788 24.616 -1.6347 48 23 3 0 0 0 0.47611 1 4220 4220 6.6304 0 1 3130000 + 2635 23258 1426 1428 2951 2951 0.026691945178072274 AGLIGSQE 8 Unmodified _AGLIGSQE_ 0 0 0 ENST00000331334.4_1_14:96001039-96001186:+|nuORF ENST00000331334.4_1_14:96001039-96001186:+|nuORF ENST00000331334.4_1_14:96001039-96001186:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7127990722656 2 387.703243 773.391933 NaN NaN NaN NaN NaN NaN NaN 39.49 1 36.941 36.441 37.441 -2.5491 0 0 0 0.21486 1 7340 7340 11.64 0.81637 1 2636 8777 1427 1429 2952 2952 -0.0038273895338534203 AGLKMPGKAVK 11 Unmodified _AGLKMPGKAVK_ 0 0 0 REV__nc|ENSG00000142186|Q96KG9-2|SCYL1 REV__nc|ENSG00000142186|Q96KG9-2|SCYL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.5368957519531 3 367.226722 1098.65834 NaN NaN NaN NaN NaN NaN NaN 41.628 1 38.993 38.493 39.493 -2.6348 0 0 0 0.22632 1 7777 7777 3.0723 0 1 + 2637 16658 1428 1430 2953 2953 0.11295228284620862 AGLRFDRLLLA 11 Unmodified _AGLRFDRLLLA_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.2441711425781 3 415.587307 1243.74009 -0.12463 -5.1796E-05 0.057336 2.3828E-05 -0.067296 -2.7967E-05 415.5872880851441 56.343 1.0458 56.343 55.836 56.882 0 91 29 4 0 0 0 0.88655 1 10722 10722 1.2503 0 1 12794000 + 2638 14396 1429 1431 2954 2954 0.12797046968080394 AGLTKMMY 8 Unmodified _AGLTKMMY_ 0 0 0 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2391357421875 2 457.727349 913.440145 -0.14141 -6.4729E-05 -0.80467 -0.00036832 -0.94608 -0.00043305 457.7268013251825 79.904 0.34586 76.228 76.077 76.423 -3.676 13 9 2 0 0 0 0.74718 1 15215 15215 24.674 7.7316 1 696880 2639 26195 1430 1432 2955 2955 -0.020037046293396088 AGLVIQKNL 9 Unmodified _AGLVIQKNL_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7401123046875 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 142.86 1 142.86 142.36 143.36 0 0 0 0 0.21844 1 28494 28494 26.341 3.1929 1 2640 1325 1431 1433 2956 2956 0.10710637202555517 AGLVLVLKIR 10 Unmodified _AGLVLVLKIR_ 0 0 0 ENST00000534591.1_1_11:64876790-64877821:+|nuORF ENST00000534591.1_1_11:64876790-64877821:+|nuORF ENST00000534591.1_1_11:64876790-64877821:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2720336914062 2 541.376426 1080.7383 NaN NaN NaN NaN NaN NaN NaN 43.959 1 41.169 40.669 41.669 -2.79 0 0 0 2.8426 1 8249 8249 0.013265 0 1 2641 11008 1432 1434 2957 2957 0.20116037950106147 AGNMKNATGNS 11 Unmodified _AGNMKNATGNS_ 0 0 0 REV__nc|ENSG00000048740|O95319|CELF2 REV__nc|ENSG00000048740|O95319|CELF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2846069335938 2 532.743105 1063.47166 0.50331 0.00026814 1.6037 0.00085435 2.107 0.0011225 532.7436266633299 61.794 0.67049 58.424 58.037 58.707 -3.3694 40 18 3 0 0 0 0.64855 1 11540 11540 15.248 2.206 1 2736400 + 2642 23937 1433 1435 2958 2958 -0.057540403416851404 AGNQILLTQ 9 Unmodified _AGNQILLTQ_ 0 0 0 REV__ENSG00000161638|ENST00000293379|ITGA5 REV__ENSG00000161638|ENST00000293379|ITGA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.726806640625 2 479.271824 956.529095 -0.36414 -0.00017452 0.082942 3.9752E-05 -0.2812 -0.00013477 479.2719191621002 61.782 0.40595 61.782 61.431 61.837 0 15 11 2 0 0 0 0.54076 1 11833 11833 26.884 0 1 2245200 + 2643 17460 1434 1436 2959 2959 0.04909169926179402 AGPGPPPPPPP 11 Unmodified _AGPGPPPPPPP_ 0 0 0 REV__ENSG00000157152|ENST00000621198|SYN2 REV__ENSG00000157152|ENST00000621198|SYN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2748107910156 2 490.763635 979.512717 0.17657 8.6652E-05 0.02017 9.8989E-06 0.19674 9.6551E-05 490.76361178689126 114.46 5.3012 114.46 112.46 117.76 0 533 151 5 0 0 0 0.47966 1 23184 23184 36.044 6.9626 1 170340000 + 2644 17285 1435 1437 2960 2960 0.022140887600926362 AGPHCERC 8 Unmodified _AGPHCERC_ 0 0 0 ENSG00000050555|ENST00000361069|LAMC3;ENST00000480883.1_1_9:133884589-133967089:+|nuORF;LAMC3|p.D568Tfs*8|2|0.4|ENSG00000050555|chr9:131052553-131052553|C/-|frameshift_variant;LAMC3|p.G699Vfs*185|2|0.47|ENSG00000050555|chr9:131057080-131057080|G/-|frameshift_variant;LAMC3|p.F794Lfs*90|1|0.35|ENSG00000050555|chr9:131066989-131066989|T/-|frameshift_variant ENSG00000050555|ENST00000361069|LAMC3 ENSG00000050555|ENST00000361069|LAMC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22100830078125 2 436.678722 871.342891 -0.16873 -7.3682E-05 -0.54115 -0.00023631 -0.70988 -0.00030999 436.67841785062376 46.593 0.6919 43.752 43.382 44.074 -2.8409 44 19 3 0 0 0 8448 1 8788 8788 6.2058 5.579 1 4571000 2645 1242 1436 1438 2961 2961 -0.09792673785636907 AGPICPVAR 9 Unmodified _AGPICPVAR_ 0 0 0 REV__ENST00000529629.5_1_11:76778025-76782656:+|nuORF REV__ENST00000529629.5_1_11:76778025-76782656:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 442.24298095703125 2 442.244555 882.474557 NaN NaN NaN NaN NaN NaN NaN 134.24 1 129.42 128.92 129.92 -4.8175 0 0 0 0.23508 1 25844 25844 8.5933 0.68312 1 + 2646 22745 1437 1439 2962 2962 0.028618795737770597 AGPKLYPKLY 10 Unmodified _AGPKLYPKLY_ 0 0 0 ENSG00000127418|ENST00000510644|FGFRL1 ENSG00000127418|ENST00000510644|FGFRL1 ENSG00000127418|ENST00000510644|FGFRL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3117065429688 2 575.336967 1148.65938 0.3081 0.00017726 -1.5054 -0.00086611 -1.1973 -0.00068884 575.3344260981484 64.851 0.65692 61.568 61.103 61.76 -3.2832 30 18 3 0 0 0 0.7323 1 12186 12186 7.9102 1.187 1 1236200 2647 3475 1438 1440 2963 2963 0.09099765925202519 AGPKTKIL 8 Unmodified _AGPKTKIL_ 0 0 0 ENST00000371184.6_1_1:61553879-61553927:+|nuORF ENST00000371184.6_1_1:61553879-61553927:+|nuORF ENST00000371184.6_1_1:61553879-61553927:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.26922607421875 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 19.476 1 18.079 17.579 18.579 -1.3966 0 0 0 0.21486 1 3211 3211 2.8892 0.82947 1 2648 9154 1439 1441 2964 2964 0.10743580628081872 AGPLDPMKRKF 11 Unmodified _AGPLDPMKRKF_ 0 0 0 REV__ENST00000462722.5_1_9:131595865-131599118:-|nuORF REV__ENST00000462722.5_1_9:131595865-131599118:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.75634765625 2 630.350083 1258.68561 NaN NaN NaN NaN NaN NaN NaN 91.865 1 87.94 87.44 88.44 -3.9251 0 0 0 0.22632 1 17987 17987 0.11104 0 1 + 2649 18198 1440 1442 2965 2965 0.06661711824995109 AGPPQPLRFI 10 Unmodified _AGPPQPLRFI_ 0 0 0 REV__nc|ENSG00000122678|Q9NP87-2|POLM REV__nc|ENSG00000122678|Q9NP87-2|POLM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 548.31787109375 2 548.319109 1094.62366 NaN NaN NaN NaN NaN NaN NaN 174.75 1 169.87 169.37 170.37 -4.8845 0 0 0 0.22588 1 34726 34726 6.7232 1.9672 1 + 2650 15698 1441 1443 2966 2966 0.0801372846817685 AGPQAPFW 8 Unmodified _AGPQAPFW_ 0 0 0 REV__ENST00000283921.4_1_7:27211115-27211478:-|nuORF REV__ENST00000283921.4_1_7:27211115-27211478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2279357910156 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 106.78 1 102.37 101.87 102.87 -4.4121 0 0 0 0.23749 1 20486 20486 0.12286 0.11459 1 + 2651 20324 1442 1444 2967 2967 -0.023224249912459527 AGPRDLLPSAP 11 Unmodified _AGPRDLLPSAP_ 0 0 0 ENSG00000283093|ENST00000634648|CENPVL2;ENSG00000223591|ENST00000602548|CENPVL1 ENSG00000283093|ENST00000634648|CENPVL2 ENSG00000283093|ENST00000634648|CENPVL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7793579101562 2 547.303655 1092.59276 NaN NaN NaN NaN NaN NaN NaN 17.431 1 16.121 15.621 16.621 -1.3109 0 0 0 0.22632 1 2791 2791 0.0059557 0 1 2652 7777 1443 1445 2968 2968 0.0501653036328662 AGPRPLFPLV 10 Unmodified _AGPRPLFPLV_ 0 0 0 ENST00000583121.5_3_17:27717493-27778530:+|nuORF ENST00000583121.5_3_17:27717493-27778530:+|nuORF ENST00000583121.5_3_17:27717493-27778530:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2827758789062 2 533.824027 1065.6335 0.25884 0.00013817 -0.70217 -0.00037484 -0.44333 -0.00023666 533.8237663071244 133.48 0.50073 128.66 128.41 128.92 -4.8175 20 13 2 0 0 0 0.8888 1 25679 25679 7.2892 2.0586 1 1411100 2653 11513 1444 1446 2969 2969 0.10330916473549223 AGPVPANAHQ 10 Unmodified _AGPVPANAHQ_ 0 0 0 SOX9|p.V306Gfs*272|1|0.28|ENSG00000125398|chr17:72123768-72123769|-/G|frameshift_variant SOX9|p.V306Gfs*272|1|0.28|ENSG00000125398|chr17:72123768-72123769|-/G|frameshift_variant SOX9|p.V306Gfs*272|1|0.28|ENSG00000125398|chr17:72123768-72123769|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2455749511719 2 481.246141 960.477728 NaN NaN NaN NaN NaN NaN NaN 27.766 1 25.77 25.27 26.27 -1.9962 0 0 0 2.8426 1 4657 4657 1.9275 1.0826 1 2654 25711 1445 1447 2970 2970 -0.004091540478725619 AGPWGLPQRS 10 Unmodified _AGPWGLPQRS_ 0 0 0 ENST00000573186.5_3_17:7219444-7222432:-|nuORF ENST00000573186.5_3_17:7219444-7222432:-|nuORF ENST00000573186.5_3_17:7219444-7222432:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.1976013183594 3 356.857686 1067.55123 -0.30269 -0.00010802 -1.0513 -0.00037517 -1.354 -0.00048319 356.85748259360946 19.05 2.8466 19.05 18.719 21.566 0 166 81 6 0 0 0 0.91149 1 3270 3270 0.15932 0 1 675630000 2655 11434 1446 1448 2971 2971 0.020153943946070285 AGQAAMRG 8 Unmodified _AGQAAMRG_ 0 0 0 REV__ENSG00000173868|ENST00000310544|PHOSPHO1 REV__ENSG00000173868|ENST00000310544|PHOSPHO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2097473144531 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 97.759 1 97.759 97.259 98.259 0 0 0 0 0.23749 1 19159 19159 0.12286 0 1 + 2656 18379 1447 1449 2972 2972 -0.024761260455534284 AGQAAMRG 8 Unmodified _AGQAAMRG_ 0 0 0 REV__ENSG00000173868|ENST00000310544|PHOSPHO1 REV__ENSG00000173868|ENST00000310544|PHOSPHO1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2106018066406 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 110.4 1 106.18 105.68 106.68 -4.2289 0 0 0 0.23749 1 21251 21251 0.12286 0.049601 1 + 2657 18379 1447 1449 2973 2973 -0.024761260455534284 AGQCWSCEPD 10 Unmodified _AGQCWSCEPD_ 0 0 0 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8;REV__MEGF8|p.T1670Qfs*60|3|0.4|ENSG00000105429|chr19:42357575-42357575|C/-|frameshift_variant REV__MEGF8|p.T1670Qfs*60|3|0.4|ENSG00000105429|chr19:42357575-42357575|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7677001953125 2 548.197141 1094.37973 0.052858 2.8977E-05 -0.66271 -0.0003633 -0.60985 -0.00033432 548.1969012264678 50.309 1.0227 47.428 46.905 47.928 -2.8811 42 28 2 0 0 0 0.89521 1 9544 9544 6.7232 0 1 2218700 + 2658 14990;23839 1448 1450 2974 2974 -0.16368466750395783 AGQCWSCEPD 10 Unmodified _AGQCWSCEPD_ 0 0 0 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8;REV__MEGF8|p.T1670Qfs*60|3|0.4|ENSG00000105429|chr19:42357575-42357575|C/-|frameshift_variant REV__MEGF8|p.T1670Qfs*60|3|0.4|ENSG00000105429|chr19:42357575-42357575|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7711181640625 2 548.197141 1094.37973 0.0056974 3.1233E-06 -0.7206 -0.00039503 -0.71491 -0.00039191 548.1967228715414 50.353 0.78072 47.347 46.907 47.688 -3.0068 36 22 2 0 0 0 0.89521 1 9227 9227 6.7232 6.7232 1 1489300 + 2659 14990;23839 1448 1450 2975 2975 -0.16368466750395783 AGQLHSQEES 10 Unmodified _AGQLHSQEES_ 0 0 0 REV__ENST00000586075.1_2_19:14044750-14048885:-|nuORF REV__ENST00000586075.1_2_19:14044750-14048885:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7696533203125 2 543.246535 1084.47852 0.1437 7.8065E-05 -2.0747 -0.0011271 -1.931 -0.001049 543.2466312899495 26.218 0.24249 24.583 24.374 24.616 -1.6347 8 6 2 0 0 0 0.89521 1 4308 4308 6.7232 0 1 183200 + 2660 23261 1449 1451 2976 2976 -0.06034404189472298 AGSFGKVSY 9 Unmodified _AGSFGKVSY_ 0 0 0 ENSG00000113211|ENST00000231136|PCDHB6 ENSG00000113211|ENST00000231136|PCDHB6 ENSG00000113211|ENST00000231136|PCDHB6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2308654785156 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 179.31 1 174.44 173.94 174.94 -4.868 0 0 0 0.19649 1 35713 35713 1.2148 1.092 1 2661 2728 1450 1452 2977 2977 -0.010864770279567892 AGSISDTNHY 10 Unmodified _AGSISDTNHY_ 0 0 0 ENST00000556729.1_1_14:24108012-24108123:+|nuORF ENST00000556729.1_1_14:24108012-24108123:+|nuORF ENST00000556729.1_1_14:24108012-24108123:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2642822265625 2 532.735803 1063.45705 0.070837 3.7738E-05 -0.41599 -0.00022161 -0.34515 -0.00018387 532.73539796454 33.439 0.52472 31.122 30.833 31.358 -2.3175 19 14 2 0 0 0 0.91149 1 6161 6161 1.6526 0.17072 1 769780 2662 11244 1451 1453 2978 2978 -0.07213789218189959 AGSLSPAASL 10 Unmodified _AGSLSPAASL_ 0 0 0 ENSG00000122859|ENST00000242462|NEUROG3 ENSG00000122859|ENST00000242462|NEUROG3 ENSG00000122859|ENST00000242462|NEUROG3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22857666015625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 73.235 1 69.697 69.197 70.197 -3.5385 0 0 0 2.8426 1 13898 13898 1.0651 0.93733 1 2663 3242 1452 1454 2979 2979 0.019015056264720442 AGSLVFGG 8 Unmodified _AGSLVFGG_ 0 0 0 REV__B3GNT9|p.A287T|1|0.42|ENSG00000237172|chr16:67149627-67149627|C/T|missense_variant REV__B3GNT9|p.A287T|1|0.42|ENSG00000237172|chr16:67149627-67149627|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 354.1907653808594 2 354.189771 706.36499 NaN NaN NaN NaN NaN NaN NaN 61.042 1 58.109 57.609 58.609 -2.9333 0 0 0 0.23366 1 11757 11757 1.4551 0.77368 1 + 2664 13170 1453 1455 2980 2980 6.197226105086884E-05 AGSNHCYDI 9 Unmodified _AGSNHCYDI_ 0 0 0 REV__VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant REV__VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2616882324219 2 490.200541 978.38653 0.06185 3.0319E-05 -0.7074 -0.00034677 -0.64555 -0.00031645 490.200074127084 68.046 0.55006 64.938 64.556 65.106 -3.1086 21 15 2 0 0 0 0.74655 1 13200 13200 3.5965 0 1 1111100 + 2665 16123 1454 1456 2981 2981 -0.10352785807504006 AGSSDNNLFR 10 Unmodified _AGSSDNNLFR_ 0 0 0 REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1 REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2591552734375 2 540.757069 1079.49959 0.44778 0.00024214 -0.076639 -4.1443E-05 0.37114 0.0002007 540.757023289119 40.158 0.45964 40.158 39.964 40.424 0 25 12 3 0 0 0 0.72988 1 7503 7503 8.1555 0.24537 1 1823600 + 2666 18696 1455 1457 2982 2982 -0.03698394089951762 AGSTKMGKAV 10 Unmodified _AGSTKMGKAV_ 0 0 0 ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF ENSG00000064932|ENST00000361757|SBNO2 ENSG00000064932|ENST00000361757|SBNO2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1483154296875 3 317.176027 948.506251 NaN NaN NaN NaN NaN NaN NaN 102.56 1 102.56 102.06 103.06 0 0 0 0 0.22588 1 20144 20144 1.9064 0.83491 1 2667 1345 1456 1458 2983 2983 0.029938275370682277 AGSTKMGKAV 10 Unmodified _AGSTKMGKAV_ 0 0 0 ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF ENSG00000064932|ENST00000361757|SBNO2 ENSG00000064932|ENST00000361757|SBNO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1492614746094 3 317.176027 948.506251 NaN NaN NaN NaN NaN NaN NaN 105.78 1 101.69 101.19 102.19 -4.0913 0 0 0 0.22588 1 20351 20351 1.9064 0.062138 1 2668 1345 1456 1458 2984 2984 0.029938275370682277 AGSVQPLL 8 Unmodified _AGSVQPLL_ 0 0 0 REV__ARID5B|p.S697P|1|0.48|ENSG00000150347|chr10:62091552-62091552|T/C|missense_variant REV__ARID5B|p.S697P|1|0.48|ENSG00000150347|chr10:62091552-62091552|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3969116210938 1 784.45633 783.449054 0.34244 0.00026863 0.24359 0.00019108 0.58602 0.00045971 784.4563836641548 83.162 0.69372 79.289 78.984 79.678 -3.8736 36 19 2 0 0 0 0.19607 1 15830 15830 46.021 0 1 5179900 + 2669 13120 1457 1459 2985 2985 0.048667283229860914 AGSVQPLL 8 Unmodified _AGSVQPLL_ 0 0 0 REV__ARID5B|p.S697P|1|0.48|ENSG00000150347|chr10:62091552-62091552|T/C|missense_variant REV__ARID5B|p.S697P|1|0.48|ENSG00000150347|chr10:62091552-62091552|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.373291015625 1 784.45633 783.449054 0.092055 7.2213E-05 0.40121 0.00031473 0.49326 0.00038694 784.4565407916613 83.035 0.68685 79.336 78.969 79.656 -3.6985 35 19 2 0 0 0 0.19607 1 15882 15882 46.021 0 1 4696500 + 2670 13120 1457 1459 2986 2986 0.048667283229860914 AGTAADTD 8 Unmodified _AGTAADTD_ 0 0 0 ENST00000498485.5_1_9:127146904-127177393:-|nuORF;nc|ENSG00000136930|Q99436-2|PSMB7;ENSG00000136930|ENST00000259457|PSMB7 ENST00000498485.5_1_9:127146904-127177393:-|nuORF ENST00000498485.5_1_9:127146904-127177393:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1683654785156 2 361.153583 720.292613 NaN NaN NaN NaN NaN NaN NaN 135.68 1 131.04 130.54 131.54 -4.6399 0 0 0 0.21486 1 26765 26765 5.2307 0 1 2671 4053 1458 1460 2987 2987 -0.07872181638151687 AGTFSQNIRT 10 Unmodified _AGTFSQNIRT_ 0 0 0 REV__nc|ENSG00000164675|Q8NA54-2|IQUB REV__nc|ENSG00000164675|Q8NA54-2|IQUB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.782958984375 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 36.829 1 34.481 33.981 34.981 -2.3479 0 0 0 2.8426 1 6517 6517 10.151 9.4692 1 + 2672 17702 1459 1461 2988 2988 0.008587693238041538 AGTREGKM 8 Unmodified _AGTREGKM_ 0 0 0 ENST00000590208.5_1_18:47796045-47799086:-|nuORF;nc|ENSG00000141644|Q9UIS9-11|MBD1 ENST00000590208.5_1_18:47796045-47799086:-|nuORF ENST00000590208.5_1_18:47796045-47799086:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23822021484375 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 113.38 1 109.1 108.6 109.6 -4.2725 0 0 0 0.21452 1 21832 21832 13.508 4.1604 1 2673 11597 1460 1462 2989 2989 -0.012835877025963782 AGVDVVKTFF 10 Unmodified _AGVDVVKTFF_ 0 0 0 REV__ENST00000477149.5_1_2:238486577-238486817:-|nuORF REV__ENST00000477149.5_1_2:238486577-238486817:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2699584960938 2 541.797675 1081.5808 0.31098 0.00016849 -3.0473 -0.001651 -2.7363 -0.0014825 542.297386345214 92.511 0.41703 88.416 88.155 88.572 -4.0946 13 11 2 0 0 0 1.1041 1 17613 17613 0.20733 0 1 1765200 + 2674 15799 1461 1463 2990 2990 0.043269136200933644 AGVIDYKY 8 Unmodified _AGVIDYKY_ 0 0 0 tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1;tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1;tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1 tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1;tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1 tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 134.39 1 129.75 129.25 130.25 -4.6399 0 0 0 0.23664 1 26501 26501 0.62683 0.50396 1 2675 25996;26500 1462 1464 2991 2991 0.003546936318457483 AGVLKIHRKE 10 Unmodified _AGVLKIHRKE_ 0 0 0 ENST00000436126.5_1_2:177043793-177052894:-|nuORF ENST00000436126.5_1_2:177043793-177052894:-|nuORF ENST00000436126.5_1_2:177043793-177052894:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3167724609375 2 575.85639 1149.69823 0.28271 0.0001628 3.0241 0.0017414 3.3068 0.0019042 576.3581400915417 116.31 0.20687 116.31 116.25 116.46 0 6 5 2 0 0 0 0.91149 1 22906 22906 0.40072 0 1 1997000 2676 9836 1463 1465 2992 2992 0.1293649127956087 AGVMMCFD 8 Unmodified _AGVMMCFD_ 0 0 0 ENST00000328345.7_2_6:99284255-99284363:+|nuORF ENST00000328345.7_2_6:99284255-99284363:+|nuORF ENST00000328345.7_2_6:99284255-99284363:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22161865234375 2 437.16881 872.323067 NaN NaN NaN NaN NaN NaN NaN 32.455 1 30.307 29.807 30.807 -2.1483 0 0 0 0.2396 1 5624 5624 0.0082765 0 1 2677 8752 1464 1466 2993 2993 -0.11820185840610975 AGVPEDAWGQG 11 Unmodified _AGVPEDAWGQG_ 0 0 0 REV__ENST00000469449.1_1_2:219248824-219251606:+|nuORF REV__ENST00000469449.1_1_2:219248824-219251606:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7828369140625 2 543.74617 1085.47779 NaN NaN NaN NaN NaN NaN NaN 103.24 1 103.24 102.74 103.74 0 0 0 0 0.224 1 20284 20284 13.042 0.80181 1 + 2678 22014 1465 1467 2994 2994 -0.06153198838546814 AGVPHCDCA 9 Unmodified _AGVPHCDCA_ 0 0 0 REV__ENSG00000065320|ENST00000173229|NTN1 REV__ENSG00000065320|ENST00000173229|NTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2191162109375 2 436.673105 871.331658 0.44693 0.00019516 0.53427 0.0002333 0.9812 0.00042846 436.6733426359921 48.73 0.98876 48.73 48.244 49.232 0 53 27 3 0 0 0 0.5428 1 9269 9269 4.897 1.0511 1 4511700 + 2679 14184 1466 1468 2995 2995 -0.10915495879771697 AGVTLPKAEA 10 Unmodified _AGVTLPKAEA_ 0 0 0 ENST00000417930.1_1_2:7865938-7870780:+|nuORF ENST00000417930.1_1_2:7865938-7870780:+|nuORF ENST00000417930.1_1_2:7865938-7870780:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73126220703125 2 478.7742 955.533846 -0.13554 -6.4895E-05 0.053457 2.5594E-05 -0.082086 -3.9301E-05 478.7741688160347 79.932 0.75979 76.256 75.87 76.63 -3.676 49 21 3 0 0 0 0.21862 1 15247 15247 74.2 14.126 1 4506900 2680 9635 1467 1469 2996 2996 0.054300540689382615 AGWNCEDDH 9 Unmodified _AGWNCEDDH_ 0 0 0 TLN1|p.K57Qfs*48|1|0.22|ENSG00000137076|chr9:35725283-35725284|-/G|frameshift_variant TLN1|p.K57Qfs*48|1|0.22|ENSG00000137076|chr9:35725283-35725284|-/G|frameshift_variant TLN1|p.K57Qfs*48|1|0.22|ENSG00000137076|chr9:35725283-35725284|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.68603515625 2 523.685256 1045.35596 NaN NaN NaN NaN NaN NaN NaN 16.022 1 14.8 14.3 15.3 -1.2219 0 0 0 0.19624 1 2283 2283 0.0033805 0 1 2681 25853 1468 1470 2997 2997 -0.16490564192554302 AGYHGPSCQ 9 Unmodified _AGYHGPSCQ_ 0 0 0 ENSG00000162591|ENST00000356575|MEGF6;MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant;MEGF6|p.A1440Hfs*78|2|0.41|ENSG00000162591|chr1:3493840-3493840|C/-|frameshift_variant ENSG00000162591|ENST00000356575|MEGF6 ENSG00000162591|ENST00000356575|MEGF6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2313232421875 2 460.189977 918.365401 NaN NaN NaN NaN NaN NaN NaN 112.88 1 108.61 108.11 109.11 -4.2725 0 0 0 0.19669 1 21736 21736 1.2148 1.2066 1 2682 5345 1469 1471 2998 2998 -0.097047511163737 AHEKLADGVH 10 Unmodified _AHEKLADGVH_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21356201171875 3 359.520962 1075.54106 0.5906 0.00021233 -0.21933 -7.8854E-05 0.37127 0.00013348 359.52107985953376 23.663 0.55703 22.11 21.868 22.425 -1.5532 31 15 3 0 0 0 0.73195 1 4123 4123 7.9454 1.2222 1 2144800 + 2683 14585 1470 1472 2999 2999 0.006307866693987307 AHEKLADGVH 10 Unmodified _AHEKLADGVH_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 359.520962 1075.54106 -0.24103 -8.6656E-05 0.32056 0.00011525 0.079532 2.8593E-05 359.5213087642019 22.149 0.90994 22.149 21.804 22.713 0 0.02996 0.00014916 NaN 7.9454 32 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1965500 + 2684 14585 1470 1472 0.006307866693987307 AHEKLADGVH 10 Unmodified _AHEKLADGVH_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.520962 1075.54106 0.5906 0.00021233 -0.21933 -7.8854E-05 0.37127 0.00013348 359.52107985953376 23.663 0.55703 22.11 21.868 22.425 -1.5532 -0.008733 -0.00043314 NaN 7.9454 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2144800 + 2685 14585 1470 1472 0.006307866693987307 AHEKLADGVH 10 Unmodified _AHEKLADGVH_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.520962 1075.54106 -0.039004 -1.4023E-05 0.42985 0.00015454 0.39084 0.00014052 359.5213012781427 23.551 0.55622 22.097 21.784 22.34 -1.4535 -0.021227 0.00026703 NaN 7.9454 31 12 4 NaN NaN NaN NaN 0 NaN NaN 0 2538600 + 2686 14585 1470 1472 0.006307866693987307 AHELWKKIR 9 Unmodified _AHELWKKIR_ 0 0 0 REV__ALDH4A1|p.A481Qfs*17|1|0.41|ENSG00000159423|chr1:18875401-18875401|C/-|frameshift_variant REV__ALDH4A1|p.A481Qfs*17|1|0.41|ENSG00000159423|chr1:18875401-18875401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.814208984375 2 590.851107 1179.68766 NaN NaN NaN NaN NaN NaN NaN 11.231 1 10.327 9.8267 10.827 -0.90401 0 0 0 0.23508 1 1471 1471 0.52476 0.52476 1 + 2687 13007 1471 1473 3000 3000 0.1050050862511398 AHESSCWT 8 Unmodified _AHESSCWT_ 0 0 0 ENST00000415440.3_1_19:19790061-19790190:+|nuORF ENST00000415440.3_1_19:19790061-19790190:+|nuORF ENST00000415440.3_1_19:19790061-19790190:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2333068847656 2 460.681985 919.349416 NaN NaN NaN NaN NaN NaN NaN 103.82 1 103.82 103.32 104.32 0 0 0 0 0.2343 1 20404 20404 0.12286 0.11459 1 2688 9612 1472 1474 3001 3001 -0.1134845735326735 AHFFQKRI 8 Unmodified _AHFFQKRI_ 0 0 0 REV__ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant REV__ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6797485351562 2 523.798343 1045.58213 0.18143 9.5032E-05 -4.1563 -0.0021771 -3.9749 -0.002082 524.2978284412269 134.8 0.28268 134.8 134.57 134.85 0 9 7 2 0 0 0 0.97173 1 26683 26683 18.135 1.1927 1 7960100 + 2689 12895 1473 1475 3002 3002 0.061165924995066234 AHGGVKGWAAK 11 Unmodified _AHGGVKGWAAK_ 0 0 0 REV__CON__P01966 REV__CON__P01966 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2652587890625 2 541.298707 1080.58286 NaN NaN NaN NaN NaN NaN NaN 176.48 1 171.69 171.19 172.19 -4.7898 0 0 0 0.23698 1 36086 36086 1.3295 0 1 + + 2690 13516 1474 1476 3003 3003 0.04579387148532987 AHHAQVEK 8 Unmodified _AHHAQVEK_ 0 0 0 ENST00000382162.7_1_22:31904270-32000328:+|nuORF;nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1 ENST00000382162.7_1_22:31904270-32000328:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1 nc|ENSG00000198089|A8K8P3-5|SFI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2461242675781 2 460.240858 918.467164 -0.090265 -4.1544E-05 -1.3472 -0.00062006 -1.4375 -0.0006616 460.24030012327313 47.941 0.55349 44.991 44.708 45.261 -2.9499 20 15 2 0 0 0 0.70613 1 8712 8712 13.508 4.1604 1 954230 2691 9339;7428 1475 1477 3004 3004 0.0046686329772001045 AHKNLHTLYEF 11 Unmodified _AHKNLHTLYEF_ 0 0 0 REV__ENSG00000143669|ENST00000389793|LYST REV__ENSG00000143669|ENST00000389793|LYST MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2372131347656 3 458.238455 1371.69353 NaN NaN NaN NaN NaN NaN NaN 111.58 1 107.16 106.66 107.66 -4.4231 0 0 0 0.22632 1 21987 21987 0.0059557 0.0045745 1 + 2692 16745 1476 1478 3005 3005 0.022555623461357754 AHLIPYCL 8 Unmodified _AHLIPYCL_ 0 0 0 REV__ENST00000503000.1_1_4:2332191-2332611:-|nuORF REV__ENST00000503000.1_1_4:2332191-2332611:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2484130859375 2 465.249306 928.484059 NaN NaN NaN NaN NaN NaN NaN 87.193 1 83.466 82.966 83.966 -3.727 0 0 0 0.21486 1 17046 17046 11.114 2.5212 1 + 2693 22448 1477 1479 3006 3006 0.016956478592987878 AHLLICLKIK 10 Unmodified _AHLLICLKIK_ 0 0 0 REV__ENST00000468862.5_1_3:159711454-159713343:+|nuORF REV__ENST00000468862.5_1_3:159711454-159713343:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3286743164062 2 576.370287 1150.72602 NaN NaN NaN NaN NaN NaN NaN 152.05 1 152.05 151.55 152.55 0 0 0 0 0.22588 1 30454 30454 3.9444 0 1 + 2694 18058 1478 1480 3007 3007 0.15668678215411092 AHLLMCQI 8 Unmodified _AHLLMCQI_ 0 0 0 nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A nc|ENSG00000168026|Q8NDW8-6|TTC21A nc|ENSG00000168026|Q8NDW8-6|TTC21A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.163330078125 3 310.162953 927.467029 NaN NaN NaN NaN NaN NaN NaN 149.15 1 144.03 143.53 144.53 -5.1204 0 0 0 0.2386 1 28897 28897 0.12286 0.12286 1 2695 5870 1479 1481 3008 3008 0.000394039818274905 AHLNRRPLTR 10 Unmodified _AHLNRRPLTR_ 0 0 0 REV__ENST00000397091.9_1_8:38315044-38325949:-|nuORF REV__ENST00000397091.9_1_8:38315044-38325949:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 412.250732421875 3 411.914417 1232.72142 0.80206 0.00033038 0.061792 2.5453E-05 0.86385 0.00035583 411.91433377204584 27.083 0.81247 25.301 25.096 25.909 -1.7821 25 22 2 0 0 0 0.91149 1 4906 4906 1.9064 1.2087 1 7122700 + 2696 21294 1480 1482 3009 3009 0.11436930116860822 AHLNRRPLTR 10 Unmodified _AHLNRRPLTR_ 0 0 0 REV__ENST00000397091.9_1_8:38315044-38325949:-|nuORF REV__ENST00000397091.9_1_8:38315044-38325949:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 411.914417 1232.72142 0.085292 3.5133E-05 1.128 0.00046465 1.2133 0.00049978 411.9148444765279 25.408 0.37571 25.408 25.22 25.596 0 0.055722 0.00052687 NaN 1.9064 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5405500 + 2697 21294 1480 1482 0.11436930116860822 AHLNRRPLTR 10 Unmodified _AHLNRRPLTR_ 0 0 0 REV__ENST00000397091.9_1_8:38315044-38325949:-|nuORF REV__ENST00000397091.9_1_8:38315044-38325949:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 411.914417 1232.72142 0.16143 6.6496E-05 0.90543 0.00037296 1.0669 0.00043946 411.91475493800857 26.983 0.62794 25.348 25.143 25.771 -1.6347 -0.0043678 0.00025182 NaN 1.9064 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4237300 + 2698 21294 1480 1482 0.11436930116860822 AHLQLRLL 8 Unmodified _AHLQLRLL_ 0 0 0 REV__ENSG00000128731|ENST00000261609|HERC2 REV__ENSG00000128731|ENST00000261609|HERC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.8442077636719 3 321.874788 962.602535 NaN NaN NaN NaN NaN NaN NaN 47.876 1 44.926 44.426 45.426 -2.9499 0 0 0 0.23584 1 8753 8753 0.25148 0.12861 1 + 2699 15934 1481 1483 3010 3010 0.1197376315932388 AHPAMALHAR 10 Unmodified _AHPAMALHAR_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2127685546875 3 358.859032 1073.55527 -0.7144 -0.00025637 -1.0001 -0.0003589 -1.7145 -0.00061527 358.85877058236423 26.063 1.5199 24.141 23.741 25.26 -1.9222 121 43 5 0 0 0 0.76159 1 4261 4261 2.086 0.17963 1 63448000 2700 12455 1482 1484 3011 3011 0.021431606166743222 AHPAMALHAR 10 Unmodified _AHPAMALHAR_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 358.859032 1073.55527 -0.21163 -7.5945E-05 -1.2969 -0.00046541 -1.5086 -0.00054136 358.8585992727865 24.284 1.255 24.284 23.863 25.118 0 0.072036 4.0867E-05 NaN 2.086 93 36 4 NaN NaN NaN NaN 0 NaN NaN 0 100930000 2701 12455 1482 1484 0.021431606166743222 AHPAMALHAR 10 Unmodified _AHPAMALHAR_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 358.859032 1073.55527 0.1085 3.8937E-05 -1.8073 -0.00064857 -1.6988 -0.00060963 358.85844607358166 25.845 1.4583 24.211 23.823 25.282 -1.6347 -0.0010705 -0.0005086 NaN 2.086 102 41 5 NaN NaN NaN NaN 0 NaN NaN 0 54055000 2702 12455 1482 1484 0.021431606166743222 AHPAMALHAR 10 Unmodified _AHPAMALHAR_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 358.859032 1073.55527 -0.7144 -0.00025637 -1.0001 -0.0003589 -1.7145 -0.00061527 358.85877058236423 26.063 1.5199 24.141 23.741 25.26 -1.9222 -0.070966 0.0003604 NaN 2.086 121 43 5 NaN NaN NaN NaN 0 NaN NaN 0 63448000 2703 12455 1482 1484 0.021431606166743222 AHPHILFML 9 Unmodified _AHPHILFML_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.19970703125 3 360.200395 1077.57936 NaN NaN NaN NaN NaN NaN NaN 24.999 1 23.146 22.646 23.646 -1.8534 0 0 0 0.23508 1 4090 4090 5.7319 0.32914 1 2704 2135 1483 1485 3012 3012 0.04367001050354702 AHPNMRTYY 9 Unmodified _AHPNMRTYY_ 0 0 0 nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;PLEKHA5|p.N310Tfs*4|1|0.15|ENSG00000052126|chr12:19274611-19274611|A/-|frameshift_variant;PLEKHA5|p.N310Kfs*8|2|0.26|ENSG00000052126|chr12:19274610-19274611|-/A|frameshift_variant;PLEKHA5|p.K320Rfs*3|1|0.28|ENSG00000052126|chr12:19274641-19274641|A/-|frameshift_variant;ENST00000510738.2_1_12:19413894-19459437:+|nuORF;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5 nc|ENSG00000052126|Q9HAU0-5|PLEKHA5 nc|ENSG00000052126|Q9HAU0-5|PLEKHA5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3298950195312 2 576.766383 1151.51821 NaN NaN NaN NaN NaN NaN NaN 22.303 1 22.303 21.803 22.803 0 0 0 0 0.23508 1 3768 3768 4.756 0.81161 1 2705 1250 1484 1486 3013 3013 -0.05148555719756587 AHREIEDKP 9 Unmodified _AHREIEDKP_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7860107421875 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 118.97 1 114.56 114.06 115.06 -4.4088 0 0 0 0.19646 1 22895 22895 0.029283 0 1 2706 3655 1485 1487 3014 3014 0.008587693238041538 AHRIHSSGAF 10 Unmodified _AHRIHSSGAF_ 0 0 0 REV__ENST00000504821.1_1_5:175813909-175815568:-|nuORF REV__ENST00000504821.1_1_5:175813909-175815568:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.77197265625 2 541.778139 1081.54173 NaN NaN NaN NaN NaN NaN NaN 139.16 1 134.52 134.02 135.02 -4.6439 0 0 0 2.8426 1 27473 27473 0.84494 0.43668 1 + 2707 22468 1486 1488 3015 3015 0.004216261090732587 AHRLKLLPM 9 Unmodified _AHRLKLLPM_ 0 0 0 REV__nc|ENSG00000198870|Q8NE28-3|STKLD1 REV__nc|ENSG00000198870|Q8NE28-3|STKLD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2127685546875 3 360.223311 1077.6481 NaN NaN NaN NaN NaN NaN NaN 30.869 1 28.752 28.252 29.252 -2.1167 0 0 0 0.19624 1 5589 5589 0.073264 0.064987 1 + 2708 19467 1487 1489 3016 3016 0.11238665350037991 AHRRVFPH 8 Unmodified _AHRRVFPH_ 0 0 0 REV__FAM135B|p.L723I|1|0.26|ENSG00000147724|chr8:138152308-138152308|G/T|missense_variant REV__FAM135B|p.L723I|1|0.26|ENSG00000147724|chr8:138152308-138152308|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.06658935546875 3 340.526382 1018.55732 -2.2913 -0.00078026 0.8243 0.0002807 -1.467 -0.00049956 340.52660017808387 15.434 0.27958 14.081 13.957 14.237 -1.3534 9 7 2 0 0 0 1.0276 1 2131 2131 1.8442 1.4435 1 330620 + 2709 16950 1488 1490 3017 3017 0.04877957416795198 AHRYLNQTI 9 Unmodified _AHRYLNQTI_ 0 0 0 nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;MYO16|p.A1585Rfs*18|2|0.37|ENSG00000041515|chr13:109141025-109141025|C/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF;MYO16|p.F842Sfs*17|6|0.36|ENSG00000041515|chr13:109009038-109009038|T/-|frameshift_variant;MYO16|p.K869Nfs*6|1|0.29|ENSG00000041515|chr13:109019782-109019782|A/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16 nc|ENSG00000041515|Q9Y6X6|MYO16 nc|ENSG00000041515|Q9Y6X6|MYO16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 372.8648681640625 3 372.536724 1114.58834 -0.73202 -0.0002727 0.69648 0.00025946 -0.035544 -1.3241E-05 372.53700046093365 43.203 1.5086 40.597 40.448 41.957 -2.606 55 42 2 0 0 0 0.88211 1 7897 7897 0.26902 0.26902 1 1344400 2710 1196 1489 1491 3018 3018 0.03563065940375054 AHTGWEVGFP 10 Unmodified _AHTGWEVGFP_ 0 0 0 CEACAM16|p.R379W|1|0.37|ENSG00000213892|chr19:44708055-44708055|C/T|missense_variant CEACAM16|p.R379W|1|0.37|ENSG00000213892|chr19:44708055-44708055|C/T|missense_variant CEACAM16|p.R379W|1|0.37|ENSG00000213892|chr19:44708055-44708055|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.1741943359375 3 367.510174 1099.50869 -0.6036 -0.00022183 0.079458 2.9202E-05 -0.52414 -0.00019263 367.5101707297887 86.326 0.4558 82.597 82.344 82.8 -3.7289 21 12 2 0 0 0 0.91149 1 16471 16471 0.69767 0.55777 1 2902500 2711 474 1490 1492 3019 3019 -0.03708000733604422 AHTGWEVGFP 10 Unmodified _AHTGWEVGFP_ 0 0 0 CEACAM16|p.R379W|1|0.37|ENSG00000213892|chr19:44708055-44708055|C/T|missense_variant CEACAM16|p.R379W|1|0.37|ENSG00000213892|chr19:44708055-44708055|C/T|missense_variant CEACAM16|p.R379W|1|0.37|ENSG00000213892|chr19:44708055-44708055|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 367.510174 1099.50869 0.0022103 8.1231E-07 -0.43512 -0.00015991 -0.43291 -0.0001591 367.5100906539421 82.892 0.50805 82.892 82.536 83.044 0 0.20899 6.2735E-05 NaN 0.69767 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2923300 2712 474 1490 1492 -0.03708000733604422 AHTGWEVGFP 10 Unmodified _AHTGWEVGFP_ 0 0 0 CEACAM16|p.R379W|1|0.37|ENSG00000213892|chr19:44708055-44708055|C/T|missense_variant CEACAM16|p.R379W|1|0.37|ENSG00000213892|chr19:44708055-44708055|C/T|missense_variant CEACAM16|p.R379W|1|0.37|ENSG00000213892|chr19:44708055-44708055|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 367.510174 1099.50869 0.27606 0.00010146 -1.0129 -0.00037225 -0.73684 -0.0002708 367.50986213845954 86.51 0.83585 82.56 82.297 83.133 -3.9503 -0.12283 -0.00057429 NaN 0.69767 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2765300 2713 474 1490 1492 -0.03708000733604422 AHVQSRTPQG 10 Unmodified _AHVQSRTPQG_ 0 0 0 nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1;ENST00000499314.6_1_5:177054553-177058526:-|nuORF nc|ENSG00000170085|Q8NDZ2|SIMC1 nc|ENSG00000170085|Q8NDZ2|SIMC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2817993164062 2 540.780879 1079.5472 0.48567 0.00026264 -0.65732 -0.00035547 -0.17165 -9.2827E-05 540.7805231994835 20.402 0.24797 19.006 18.863 19.111 -1.3966 12 6 2 0 0 0 0.63858 1 3399 3399 17.113 1.2657 1 906390 2714 6037 1491 1493 3020 3020 0.010613049008952657 AIACFLYK 8 Unmodified _AIACFLYK_ 0 0 0 ENST00000497209.5_1_20:61299742-61303242:+|nuORF;nc|ENSG00000101187|Q96BD0-2|SLCO4A1;nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1 ENST00000497209.5_1_20:61299742-61303242:+|nuORF ENST00000497209.5_1_20:61299742-61303242:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16949462890625 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 5.0375 1 3.9975 3.4975 4.4975 -1.04 0 0 0 0.21486 1 199 199 0.45834 0 1 2715 2044 1492 1494 3021 3021 0.022165320020462786 AIAELQDGL 9 Unmodified _AIAELQDGL_ 0 0 0 ENST00000361716.7_1_12:6572127-6572325:-|nuORF ENST00000361716.7_1_12:6572127-6572325:-|nuORF ENST00000361716.7_1_12:6572127-6572325:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2512512207031 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 69.165 1 65.985 65.485 66.485 -3.1796 0 0 0 0.22621 1 13447 13447 15.847 1.9411 1 2716 9032 1493 1495 3022 3022 0.01945774797957256 AIAGSHFGN 9 Unmodified _AIAGSHFGN_ 0 0 0 REV__ENST00000384281.1_11:2985039-2985099:-|nuORF REV__ENST00000384281.1_11:2985039-2985099:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2167663574219 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 115.91 1 111.56 111.06 112.06 -4.3585 0 0 0 0.23508 1 22315 22315 11.64 1.4569 1 + 2717 21188 1494 1496 3023 3023 -0.027245144849530334 AIANMVRVQ 9 Unmodified _AIANMVRVQ_ 0 0 0 ENST00000547260.5_1_12:49168067-49168277:-|nuORF ENST00000547260.5_1_12:49168067-49168277:-|nuORF ENST00000547260.5_1_12:49168067-49168277:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 501.2215881347656 2 501.281669 1000.54878 NaN NaN NaN NaN NaN NaN NaN 149.3 1 144.57 144.07 145.07 -4.7323 0 0 0 0.23508 1 29652 29652 12.532 4.6214 1 2718 11139 1495 1497 3024 3024 0.04853222665303747 AICLPLHY 8 Unmodified _AICLPLHY_ 0 0 0 OR2L3|p.F127L|1|0.5|ENSG00000198128|chr1:248061060-248061060|T/C|missense_variant OR2L3|p.F127L|1|0.5|ENSG00000198128|chr1:248061060-248061060|T/C|missense_variant OR2L3|p.F127L|1|0.5|ENSG00000198128|chr1:248061060-248061060|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2491760253906 2 465.249306 928.484059 NaN NaN NaN NaN NaN NaN NaN 114.47 1 109.92 109.42 110.42 -4.555 0 0 0 0.21486 1 21978 21978 11.114 3.8252 1 2719 12726 1496 1498 3025 3025 0.01695647859287419 AICPPILMEV 10 Unmodified _AICPPILMEV_ 0 0 0 REV__ENST00000519116.5_1_5:138211286-138216790:+|nuORF REV__ENST00000519116.5_1_5:138211286-138216790:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7913818359375 2 543.290314 1084.56607 0.19259 0.00010463 0.93147 0.00050606 1.1241 0.00061069 543.2906965847804 91.934 0.65056 88.009 87.652 88.303 -3.9251 44 18 4 0 0 0 0.61964 1 18053 18053 18.146 1.2041 1 4295400 + 2720 22605 1497 1499 3026 3026 0.027173821560836586 AICRRKRY 8 Unmodified _AICRRKRY_ 0 0 0 nc|ENSG00000213996|Q9BZW4-2|TM6SF2;ENSG00000213996|ENST00000389363|TM6SF2 nc|ENSG00000213996|Q9BZW4-2|TM6SF2 nc|ENSG00000213996|Q9BZW4-2|TM6SF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2786865234375 2 533.308552 1064.60255 NaN NaN NaN NaN NaN NaN NaN 161.21 1 155.98 155.48 156.48 -5.2299 0 0 0 0.21323 1 31309 31309 14.582 1.0738 1 2721 7714 1498 1500 3027 3027 0.07283439887669374 AIDEDVLRY 9 Unmodified _AIDEDVLRY_ 0 0 0 ENSG00000100023|ENST00000398831|PPIL2;nc|ENSG00000100023|Q13356-2|PPIL2 ENSG00000100023|ENST00000398831|PPIL2 ENSG00000100023|ENST00000398831|PPIL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7816772460938 2 547.279846 1092.54514 0.57692 0.00031574 -0.22403 -0.00012261 0.35289 0.00019313 547.2796633864403 105.93 1.1872 105.93 105.39 106.57 0 98 33 4 0 0 0 8.0306E-08 8 20788 20739;20743;20786;20788;20838;20882;20885;20886 149.91 77.992 1 69367000 2722 1920 1499 1501 3028;3029;3030;3031;3032;3033;3034;3035 3031 0.002568313724395921 AIDEDVLRY 9 Unmodified _AIDEDVLRY_ 0 0 0 ENSG00000100023|ENST00000398831|PPIL2;nc|ENSG00000100023|Q13356-2|PPIL2 ENSG00000100023|ENST00000398831|PPIL2 ENSG00000100023|ENST00000398831|PPIL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.781494140625 2 547.279846 1092.54514 -0.18034 -9.8696E-05 0.54238 0.00029683 0.36204 0.00019814 547.2800795155218 110.31 1.3152 105.93 105.21 106.52 -4.3776 128 37 5 0 0 0 5.2769E-24 5 21730 21675;21677;21730;21777;21813 176.84 84.346 1 89266000 2723 1920 1499 1501 3036;3037;3038;3039;3040 3038 0.002568313724395921 AIDEDVLRY 9 Unmodified _AIDEDVLRY_ 0 0 0 ENSG00000100023|ENST00000398831|PPIL2;nc|ENSG00000100023|Q13356-2|PPIL2 ENSG00000100023|ENST00000398831|PPIL2 ENSG00000100023|ENST00000398831|PPIL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.781494140625 2 547.279846 1092.54514 -0.14903 -8.1561E-05 0.57295 0.00031356 0.42392 0.000232 547.2801262164131 110.47 0.98624 105.98 105.48 106.47 -4.4915 103 27 5 0 0 0 5.8837000000000003E-33 5 21229 21129;21180;21229;21276;21292 185.05 96.096 1 83568000 2724 1920 1499 1501 3041;3042;3043;3044;3045 3043 0.002568313724395921 AIDEDVLRY 9 Unmodified _AIDEDVLRY_ 0 0 0 ENSG00000100023|ENST00000398831|PPIL2;nc|ENSG00000100023|Q13356-2|PPIL2 ENSG00000100023|ENST00000398831|PPIL2 ENSG00000100023|ENST00000398831|PPIL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7815551757812 2 547.279846 1092.54514 0.71481 0.0003912 -0.34008 -0.00018612 0.37473 0.00020508 547.2796336738303 110.06 1.6161 105.88 105.37 106.98 -4.1826 134 45 5 0 0 0 5.2769E-24 6 21170 21127;21167;21170;21217;21315;21353 176.84 94.947 1 81117000 2725 1920 1499 1501 3046;3047;3048;3049;3050;3051 3048 0.002568313724395921 AIDRIHRS 8 Unmodified _AIDRIHRS_ 0 0 0 REV__ENSG00000198040|ENST00000539354|ZNF84 REV__ENSG00000198040|ENST00000539354|ZNF84 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.1684875488281 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 86.498 1 86.498 85.998 86.998 0 0 0 0 0.21486 1 16883 16883 1.6526 0 1 + 2726 19385 1500 1502 3052 3052 0.05130527597418677 AIDRVTTSV 9 Unmodified _AIDRVTTSV_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7705078125 2 481.269281 960.52401 0.27813 0.00013385 -0.61518 -0.00029607 -0.33706 -0.00016222 481.2689599222084 48.754 0.46143 48.754 48.454 48.915 0 23 12 2 0 0 0 0.14457 2 9219 9175;9219 55.235 19.108 1 3037100 2727 4076 1501 1503 3053;3054 3054 0.042168660635638844 AIDRVTTSV 9 Unmodified _AIDRVTTSV_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77069091796875 2 481.269281 960.52401 -0.12543 -6.0368E-05 -0.0097354 -4.6853E-06 -0.13517 -6.5053E-05 481.26915282278156 51.421 0.55297 48.539 48.245 48.798 -2.8824 40 15 3 0 0 0 0.14457 2 9781 9734;9781 55.235 22.449 1 4351800 2728 4076 1501 1503 3055;3056 3056 0.042168660635638844 AIDRVTTSV 9 Unmodified _AIDRVTTSV_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7706298828125 2 481.269281 960.52401 0.073039 3.5152E-05 -0.22684 -0.00010917 -0.1538 -7.4017E-05 481.26910111137045 51.689 0.6255 48.644 48.262 48.888 -3.0453 39 17 3 0 0 0 0.16962 2 9503 9463;9503 51.415 19.11 1 3983800 2729 4076 1501 1503 3057;3058 3058 0.042168660635638844 AIDRVTTSV 9 Unmodified _AIDRVTTSV_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7708740234375 2 481.269281 960.52401 -0.12662 -6.094E-05 0.030202 1.4535E-05 -0.096421 -4.6404E-05 481.2691950871591 51.61 0.59782 48.559 48.272 48.87 -3.0517 41 16 3 0 0 0 0.1118 1 9527 9527 55.235 15.285 1 3220500 2730 4076 1501 1503 3059 3059 0.042168660635638844 AIDSAFEY 8 Unmodified _AIDSAFEY_ 0 0 0 REV__ENSG00000196455|ENST00000356763|PIK3R4 REV__ENSG00000196455|ENST00000356763|PIK3R4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2245788574219 2 458.208358 914.402163 -0.49903 -0.00022866 0.94861 0.00043466 0.44959 0.000206 458.2087402339897 106.85 0.76691 102.58 102.25 103.02 -4.2638 31 21 2 0 0 0 0.53444 1 21063 21063 26.341 1.6674 1 1960400 + 2731 19247 1502 1504 3060 3060 -0.05846176018803817 AIDSAFEY 8 Unmodified _AIDSAFEY_ 0 0 0 REV__ENSG00000196455|ENST00000356763|PIK3R4 REV__ENSG00000196455|ENST00000356763|PIK3R4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2221374511719 2 458.208358 914.402163 -0.064059 -2.9353E-05 0.25996 0.00011912 0.1959 8.9765E-05 458.20841553621693 106.97 0.55457 102.55 102.3 102.85 -4.4121 34 15 3 0 0 0 0.64227 1 20560 20560 19.439 0 1 1739100 + 2732 19247 1502 1504 3061 3061 -0.05846176018803817 AIEARLKD 8 Unmodified _AIEARLKD_ 0 0 0 REV__ENSG00000198515|ENST00000514170|CNGA1 REV__ENSG00000198515|ENST00000514170|CNGA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2217102050781 2 458.266542 914.51853 -0.038603 -1.7691E-05 0.23682 0.00010853 0.19821 9.0835E-05 458.2666025629076 58.476 0.68613 58.476 58.105 58.792 0 54 19 4 0 0 0 0.072337 2 11184 11184;11215 78.728 3.8753 1 18054000 + 2733 19417 1503 1505 3062;3063 3062 0.05785187271749237 AIEARLKD 8 Unmodified _AIEARLKD_ 0 0 0 REV__ENSG00000198515|ENST00000514170|CNGA1 REV__ENSG00000198515|ENST00000514170|CNGA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2381896972656 2 458.266542 914.51853 -0.07237 -3.3165E-05 0.32053 0.00014689 0.24816 0.00011372 458.26661808989655 61.201 0.64931 58.268 57.926 58.575 -2.9333 42 18 3 0 0 0 0.069961 1 11792 11792 69.105 3.8699 1 6828700 + 2734 19417 1503 1505 3064 3064 0.05785187271749237 AIEARLKD 8 Unmodified _AIEARLKD_ 0 0 0 REV__ENSG00000198515|ENST00000514170|CNGA1 REV__ENSG00000198515|ENST00000514170|CNGA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23779296875 2 458.266542 914.51853 -0.07237 -3.3165E-05 0.32053 0.00014689 0.24816 0.00011372 458.26661808989655 61.201 0.64931 58.268 57.926 58.575 -2.9333 42 18 3 0 0 0 0.4122 1 11735 11735 38.176 17.761 1 6828700 + 2735 19417 1503 1505 3065 3065 0.05785187271749237 AIEARLKD 8 Unmodified _AIEARLKD_ 0 0 0 REV__ENSG00000198515|ENST00000514170|CNGA1 REV__ENSG00000198515|ENST00000514170|CNGA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2260437011719 2 458.266542 914.51853 0.059035 2.7054E-05 0.18057 8.2748E-05 0.2396 0.0001098 458.26655015763197 61.699 0.5301 58.33 58.002 58.532 -3.3694 41 14 3 0 0 0 0.11546 1 11484 11484 60.074 6.2411 1 7324900 + 2736 19417 1503 1505 3066 3066 0.05785187271749237 AIEARLKD 8 Unmodified _AIEARLKD_ 0 0 0 REV__ENSG00000198515|ENST00000514170|CNGA1 REV__ENSG00000198515|ENST00000514170|CNGA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23785400390625 2 458.266542 914.51853 0.18538 8.4953E-05 0.061853 2.8345E-05 0.24723 0.0001133 458.26649892285957 61.503 0.592 58.263 57.962 58.554 -3.2395 43 16 3 0 0 0 0.11546 1 11512 11512 60.074 3.8969 1 7493300 + 2737 19417 1503 1505 3067 3067 0.05785187271749237 AIEARLKD 8 Unmodified _AIEARLKD_ 0 0 0 REV__ENSG00000198515|ENST00000514170|CNGA1 REV__ENSG00000198515|ENST00000514170|CNGA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384338378906 2 458.266542 914.51853 0.18538 8.4953E-05 0.061853 2.8345E-05 0.24723 0.0001133 458.26649892285957 61.503 0.592 58.263 57.962 58.554 -3.2395 43 16 3 0 0 0 0.38349 1 11558 11558 39.95 3.4435 1 7493300 + 2738 19417 1503 1505 3068 3068 0.05785187271749237 AIEETVVPG 9 Unmodified _AIEETVVPG_ 0 0 0 REV__ENSG00000150403|ENST00000434316|TMCO3 REV__ENSG00000150403|ENST00000434316|TMCO3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2389221191406 2 457.745108 913.475663 0.69917 0.00032004 2.7602 0.0012634 3.4593 0.0015835 457.7447893243167 107.13 0.13496 102.99 102.94 103.08 -4.135 5 3 2 0 0 0 0.32428 1 20593 20593 30.225 6.2042 1 475870 + 2739 17031 1504 1506 3069 3069 0.015463724236724374 AIEEWSLN 8 Unmodified _AIEEWSLN_ 0 0 0 REV__ENSG00000110871|ENST00000288532|COQ5 REV__ENSG00000110871|ENST00000288532|COQ5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2328796386719 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 132.87 1 132.87 132.37 133.37 0 0 0 0 0.2074 1 26274 26274 19.439 3.5918 1 + 2740 15221 1505 1507 3070 3070 -0.02654798236130773 AIELMKCN 8 Unmodified _AIELMKCN_ 0 0 0 nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.54339599609375 2 461.230256 920.445959 -0.0098745 -4.5544E-06 -0.68206 -0.00031459 -0.69194 -0.00031914 461.22942121022453 50.269 0.53628 47.224 46.924 47.46 -3.0453 23 15 2 0 0 0 1.0095 1 9205 9205 5.7604 0 1 662190 2741 4589 1506 1508 3071 3071 -0.017446061176769945 AIELMKCN 8 Unmodified _AIELMKCN_ 0 0 0 nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.230256 920.445959 -0.20825 -9.6053E-05 -0.95196 -0.00043907 -1.1602 -0.00053512 461.22964442284643 50.033 0.56175 47.152 46.798 47.36 -2.8811 -0.035719 -9.0678E-05 NaN 5.7604 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 940230 2742 4589 1506 1508 -0.017446061176769945 AIFQGRMP 8 Unmodified _AIFQGRMP_ 0 0 0 ENST00000415481.1_1_1:809210-809726:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF ENST00000415481.1_1_1:809210-809726:+|nuORF ENST00000415481.1_1_1:809210-809726:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2427673339844 2 460.244555 918.474557 NaN NaN NaN NaN NaN NaN NaN 136.07 1 131.24 130.74 131.74 -4.8307 0 0 0 0.23487 1 26197 26197 0.25148 0.12366 1 2743 8472 1507 1509 3072 3072 0.012058795737857508 AIFYPLRY 8 Unmodified _AIFYPLRY_ 0 0 0 OR13C8|p.C127F|1|0.46|ENSG00000186943|chr9:104569547-104569547|G/T|missense_variant OR13C8|p.C127F|1|0.46|ENSG00000186943|chr9:104569547-104569547|G/T|missense_variant OR13C8|p.C127F|1|0.46|ENSG00000186943|chr9:104569547-104569547|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2821655273438 2 521.789653 1041.56475 -0.23968 -0.00012506 -1.8901 -0.00098626 -2.1298 -0.0011113 521.789406760985 77.546 0.24725 74.083 73.934 74.181 -3.4633 7 6 2 0 0 0 0.76728 1 15112 15112 5.7604 0.52976 1 1074100 2744 12724 1508 1510 3073 3073 0.04563252173852561 AIGATVSSTL 10 Unmodified _AIGATVSSTL_ 0 0 0 REV__RBP3|p.T1150I|1|0.22|ENSG00000265203|chr10:47357162-47357162|C/T|missense_variant REV__RBP3|p.T1150I|1|0.22|ENSG00000265203|chr10:47357162-47357162|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23553466796875 2 460.258382 918.502212 -0.1057 -4.865E-05 0.13151 6.0529E-05 0.02581 1.1879E-05 460.2583859924246 44.865 0.63984 42.075 41.745 42.385 -2.79 39 17 3 0 0 0 0.82094 1 8370 8370 10.824 0 1 2478000 + 2745 24554 1509 1511 3074 3074 0.03970061315010298 AIGEELLQ 8 Unmodified _AIGEELLQ_ 0 0 0 REV__nc|ENSG00000159433|Q9P2P6-2|STARD9 REV__nc|ENSG00000159433|Q9P2P6-2|STARD9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2161560058594 2 436.739825 871.465098 -0.12137 -5.3005E-05 0.18484 8.0725E-05 0.063471 2.772E-05 436.73987621799733 108.02 0.48096 103.6 103.34 103.82 -4.4121 19 13 2 0 0 0 0.16788 1 20701 20701 49.669 5.2619 1 646430 + 2746 17372 1510 1512 3075 3075 0.024223897692422725 AIGEKNFH 8 Unmodified _AIGEKNFH_ 0 0 0 MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;ENSG00000095777|ENST00000642920|MYO3A;MYO3A|p.N727Kfs*9|1|0.22|ENSG00000095777|chr10:26128448-26128449|-/A|frameshift_variant;MYO3A|p.H990Ifs*9|1|0.26|ENSG00000095777|chr10:26157482-26157482|C/-|frameshift_variant MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2387390136719 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 103.07 1 98.886 98.386 99.386 -4.1861 0 0 0 0.21486 1 20262 20262 9.3474 0.75416 1 2747 1868 1511 1513 3076 3076 0.00036345066178000707 AIGFHEVIEF 10 Unmodified _AIGFHEVIEF_ 0 0 0 REV__ENSG00000156486|ENST00000287042|KCNS2 REV__ENSG00000156486|ENST00000287042|KCNS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7131042480469 3 387.86948 1160.58661 NaN NaN NaN NaN NaN NaN NaN 13.249 1 13.249 12.749 13.749 0 0 0 0 0.22588 1 1899 1899 0.69767 0.42865 1 + 2748 17261 1512 1514 3077 3077 0.012740121317619924 AIGKHINLP 9 Unmodified _AIGKHINLP_ 0 0 0 REV__ENST00000472828.1_1_2:179695251-179701862:-|nuORF REV__ENST00000472828.1_1_2:179695251-179701862:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7843322753906 2 481.792727 961.5709 NaN NaN NaN NaN NaN NaN NaN 104.94 1 100.58 100.08 101.08 -4.3684 0 0 0 0.22251 1 20114 20114 16.942 1.0951 1 + 2749 22061 1513 1515 3078 3078 0.08857770405347765 AIGKIGENEI 10 Unmodified _AIGKIGENEI_ 0 0 0 tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1 tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1 tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26123046875 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 88.991 1 88.991 88.491 89.491 0 0 0 0 0.22583 1 17373 17373 13.906 3.8321 1 2750 26081 1514 1516 3079 3079 0.04629421752088092 AIGKIGENEI 10 Unmodified _AIGKIGENEI_ 0 0 0 tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1 tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1 tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.281005859375 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 89.144 1 89.144 88.644 89.644 0 0 0 0 0.22583 1 17405 17405 13.906 2.2658 1 2751 26081 1514 1516 3080 3080 0.04629421752088092 AIGLEQEAV 9 Unmodified _AIGLEQEAV_ 0 0 0 REV__SPTBN5|p.R482Afs*7|1|0.21|ENSG00000137877|chr15:41885811-41885812|-/C|frameshift_variant REV__SPTBN5|p.R482Afs*7|1|0.21|ENSG00000137877|chr15:41885811-41885812|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25018310546875 2 465.250557 928.486562 0.56813 0.00026432 -0.83651 -0.00038919 -0.26838 -0.00012486 465.2500566223146 113.24 0.8054 108.96 108.6 109.41 -4.2725 44 22 3 0 0 0 0.48644 1 21869 21869 20.454 1.1966 1 3547700 + 2752 16422 1515 1517 3081 3081 0.01945774797957256 AIGMRNPD 8 Unmodified _AIGMRNPD_ 0 0 0 ENST00000246024.6_1_20:7958227-7958296:-|nuORF ENST00000246024.6_1_20:7958227-7958296:-|nuORF ENST00000246024.6_1_20:7958227-7958296:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2158508300781 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 94.634 1 90.443 89.943 90.943 -4.1911 0 0 0 0.21486 1 18056 18056 10.183 1.5901 1 2753 8207 1516 1518 3082 3082 -0.023875877026057424 AIGNSEITL 9 Unmodified _AIGNSEITL_ 0 0 0 tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22772216796875 2 459.250557 916.486562 0.24184 0.00011106 0.74079 0.00034021 0.98263 0.00045127 459.2509185389347 102.54 0.86736 98.216 97.874 98.741 -4.3208 50 24 3 0 0 0 0.59384 1 19654 19654 13.508 1.8676 1 2616200 2754 25952 1517 1519 3083 3083 0.024977747979505693 AIGNSEITL 9 Unmodified _AIGNSEITL_ 0 0 0 tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.250557 916.486562 -0.10787 -4.9537E-05 1.1328 0.00052024 1.0249 0.0004707 459.25120981074696 102.28 0.87569 98.097 97.785 98.66 -4.1861 -0.12645 0.00060065 NaN 13.508 53 24 3 NaN NaN NaN NaN 0 NaN NaN 0 3500700 2755 25952 1517 1519 0.024977747979505693 AIGTEALAK 9 Unmodified _AIGTEALAK_ 0 0 0 REV__ENST00000531389.2_1_12:122991779-122992905:-|nuORF REV__ENST00000531389.2_1_12:122991779-122992905:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2157897949219 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 94.201 1 90.211 89.711 90.711 -3.9907 0 0 0 0.23411 1 18456 18456 13.508 0.97634 1 + 2756 15226 1518 1520 3084 3084 0.055383825231729134 AIHIWRYSWF 10 Unmodified _AIHIWRYSWF_ 0 0 0 REV__nc|ENSG00000147231|Q6NSI4-3|RADX REV__nc|ENSG00000147231|Q6NSI4-3|RADX MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2394714355469 3 460.240018 1377.69823 NaN NaN NaN NaN NaN NaN NaN 178.93 1 174.02 173.52 174.52 -4.9088 0 0 0 2.8426 1 35699 35699 0.13989 0.04505 1 + 2757 16927 1519 1521 3085 3085 0.0244849127955149 AIHLLLRIVR 10 Unmodified _AIHLLLRIVR_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;ENST00000573536.1_1_17:3912804-3919778:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2911376953125 2 602.40605 1202.79755 0.35418 0.00021336 3.3679 0.0020289 3.7221 0.0022422 602.407658490204 141.5 0.52591 136.63 136.32 136.85 -4.8678 18 14 2 0 0 0 0.91149 1 27316 27316 3.9444 0.3479 1 2065000 2758 1503 1520 1522 3086 3086 0.2042593396427037 AIHRRLILS 9 Unmodified _AIHRRLILS_ 0 0 0 ENST00000331314.10_1_1:200635381-200635528:-|nuORF ENST00000331314.10_1_1:200635381-200635528:-|nuORF ENST00000331314.10_1_1:200635381-200635528:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21380615234375 3 360.232975 1077.6771 NaN NaN NaN NaN NaN NaN NaN 52.824 1 49.94 49.44 50.44 -2.8837 0 0 0 0.19636 1 10057 10057 2.6312 2.623 1 2759 8776 1521 1523 3087 3087 0.14136525970707225 AIIAMEKPA 9 Unmodified _AIIAMEKPA_ 0 0 0 nc|ENSG00000120498|Q8IYF3|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3-2|TEX11 nc|ENSG00000120498|Q8IYF3|TEX11 nc|ENSG00000120498|Q8IYF3|TEX11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1800537109375 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 94.905 1 94.905 94.405 95.405 0 0 0 0 0.23508 1 18588 18588 2.7352 0.23671 1 2760 3136 1522 1524 3088 3088 0.04727899685212833 AIIAMEKPA 9 Unmodified _AIIAMEKPA_ 0 0 0 nc|ENSG00000120498|Q8IYF3|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3-2|TEX11 nc|ENSG00000120498|Q8IYF3|TEX11 nc|ENSG00000120498|Q8IYF3|TEX11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1800537109375 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 105.61 1 105.61 105.11 106.11 0 0 0 0 0.23508 1 20756 20756 2.7352 0.23671 1 2761 3136 1522 1524 3089 3089 0.04727899685212833 AIIAMEKPA 9 Unmodified _AIIAMEKPA_ 0 0 0 nc|ENSG00000120498|Q8IYF3|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3-2|TEX11 nc|ENSG00000120498|Q8IYF3|TEX11 nc|ENSG00000120498|Q8IYF3|TEX11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.179931640625 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 112.19 1 112.19 111.69 112.69 0 0 0 0 0.23508 1 22073 22073 2.7352 0.23671 1 2762 3136 1522 1524 3090 3090 0.04727899685212833 AIIAMEKPA 9 Unmodified _AIIAMEKPA_ 0 0 0 nc|ENSG00000120498|Q8IYF3|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3-2|TEX11 nc|ENSG00000120498|Q8IYF3|TEX11 nc|ENSG00000120498|Q8IYF3|TEX11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1911315917969 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 95.57 1 91.689 91.189 92.189 -3.881 0 0 0 0.23508 1 18337 18337 2.7352 0.23671 1 2763 3136 1522 1524 3091 3091 0.04727899685212833 AIIAMEKPA 9 Unmodified _AIIAMEKPA_ 0 0 0 nc|ENSG00000120498|Q8IYF3|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3-2|TEX11 nc|ENSG00000120498|Q8IYF3|TEX11 nc|ENSG00000120498|Q8IYF3|TEX11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1788024902344 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 99.339 1 95.382 94.882 95.882 -3.9564 0 0 0 0.23508 1 19074 19074 2.7352 0.23671 1 2764 3136 1522 1524 3092 3092 0.04727899685212833 AIIDKYIKL 9 Unmodified _AIIDKYIKL_ 0 0 0 RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.23065185546875 3 359.561987 1075.66413 -0.24529 -8.8199E-05 0.26762 9.6224E-05 0.02232 8.0256E-06 359.561985313728 133.12 0.65903 133.12 132.83 133.49 0 42 18 3 0 0 0 0.069179 1 26391 26391 36.127 15.673 1 5850900 2765 1202 1523 1525 3093 3093 0.12932650067932627 AIIDKYIKL 9 Unmodified _AIIDKYIKL_ 0 0 0 RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2384338378906 3 359.561987 1075.66413 -0.24448 -8.7904E-05 0.24891 8.9497E-05 0.00443 1.5928E-06 359.5620531583742 137.27 0.67172 132.63 132.31 132.98 -4.6413 53 18 4 0 0 0 0.0021091 1 27111 27111 113.93 46.094 1 11101000 2766 1202 1523 1525 3094 3094 0.12932650067932627 AIIDKYIKL 9 Unmodified _AIIDKYIKL_ 0 0 0 RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2304382324219 3 359.561987 1075.66413 -0.44718 -0.00016079 0.61661 0.00022171 0.16942 6.0918E-05 359.5621473773574 137.53 0.81839 132.69 132.31 133.13 -4.84 56 22 3 0 0 0 0.028324 1 26525 26525 113.93 46.094 1 8419500 2767 1202 1523 1525 3095 3095 0.12932650067932627 AIIDKYIKL 9 Unmodified _AIIDKYIKL_ 0 0 0 RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.561987 1075.66413 0.069248 2.4899E-05 0.011904 4.2803E-06 0.081152 2.9179E-05 359.5619322777527 137.65 0.74942 132.73 132.29 133.04 -4.9215 0.046691 -0.00031927 NaN 113.93 52 20 3 NaN NaN NaN NaN 0 NaN NaN 0 9720000 2768 1202 1523 1525 0.12932650067932627 AIIGKKGA 8 Unmodified _AIIGKKGA_ 0 0 0 ENST00000550858.1_1_12:42681476-42682067:+|nuORF;nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2 ENST00000550858.1_1_12:42681476-42682067:+|nuORF ENST00000550858.1_1_12:42681476-42682067:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 379.2228698730469 2 379.250163 756.485774 -0.15902 -6.0309E-05 0.53196 0.00020174 0.37293 0.00014144 379.2502996557752 62.859 0.41473 59.898 59.741 60.155 -2.9614 14 11 2 0 0 0 0.88646 1 12180 12180 6.1918 5.565 1 664040 2769 1488 1524 1526 3096 3096 0.09779024939564351 AIIKETEQL 9 Unmodified _AIIKETEQL_ 0 0 0 REV__KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant REV__KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2809448242188 2 522.800414 1043.58628 -0.39454 -0.00020627 0.31475 0.00016455 -0.07979 -4.1714E-05 522.8004816256941 92.839 0.1762 88.695 88.589 88.765 -4.1435 7 4 2 0 0 0 0.69192 1 17700 17700 26.884 0 1 840170 + 2770 15955 1525 1527 3097 3097 0.06622592411895312 AIILILLYL 9 Unmodified _AIILILLYL_ 0 0 0 tr|U7SZI7|U7SZI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00886PE=4SV=1 tr|U7SZI7|U7SZI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00886PE=4SV=1 tr|U7SZI7|U7SZI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00886PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2703247070312 2 522.857004 1043.69945 0.19749 0.00010326 -1.2722 -0.00066516 -1.0747 -0.0005619 522.8582029502306 144.19 0.10083 144.19 144.1 144.2 0 4 2 2 0 0 0 0.85699 1 28782 28782 2.3027 0 1 1892000 2771 26297 1526 1528 3098 3098 0.17935312595750474 AIITGTKRVK 10 Unmodified _AIITGTKRVK_ 0 0 0 REV__PSMB7|p.T45I|1|0.14|ENSG00000136930|chr9:124414864-124414864|G/A|missense_variant REV__PSMB7|p.T45I|1|0.14|ENSG00000136930|chr9:124414864-124414864|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7926635742188 2 543.853316 1085.69208 NaN NaN NaN NaN NaN NaN NaN 83.922 1 80.012 79.512 80.512 -3.9093 0 0 0 0.22588 1 15947 15947 10.824 1.4765 1 + 2772 24521 1527 1529 3099 3099 0.152659730480309 AIKESTAE 8 Unmodified _AIKESTAE_ 0 0 0 REV__tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 REV__tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2499694824219 2 424.721633 847.428712 0.10347 4.3948E-05 -0.12596 -5.3499E-05 -0.02249 -9.5518E-06 424.7214871711666 31.796 0.70042 29.566 29.2 29.9 -2.2305 45 19 3 0 0 0 0.53444 1 5725 5725 26.341 1.6674 1 6666800 + 2773 24857 1528 1530 3100 3100 -0.0011048712748333855 AIKESTAE 8 Unmodified _AIKESTAE_ 0 0 0 REV__tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 REV__tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 424.721633 847.428712 0.10347 4.3948E-05 -0.12596 -5.3499E-05 -0.02249 -9.5518E-06 424.7214871711666 31.796 0.70042 29.566 29.2 29.9 -2.2305 -0.091589 3.8786E-05 NaN 26.341 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6666800 + 2774 24857 1528 1530 -0.0011048712748333855 AIKESTAE 8 Unmodified _AIKESTAE_ 0 0 0 REV__tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 REV__tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 424.721633 847.428712 0.25197 0.00010702 -0.27344 -0.00011614 -0.021473 -9.1202E-06 424.72142879203244 31.717 0.70575 29.691 29.302 30.008 -2.0264 0.033484 -8.6488E-05 NaN 26.341 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6183000 + 2775 24857 1528 1530 -0.0011048712748333855 AIKESTAE 8 Unmodified _AIKESTAE_ 0 0 0 REV__tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 REV__tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 424.721633 847.428712 0.20122 8.5461E-05 -0.089768 -3.8126E-05 0.11145 4.7334E-05 424.7215325784874 31.864 0.66148 29.716 29.338 29.999 -2.1483 0.058105 6.9532E-05 NaN 26.341 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4986700 + 2776 24857 1528 1530 -0.0011048712748333855 AIKKKLKAF 9 Unmodified _AIKKKLKAF_ 0 0 0 REV__ENSG00000136935|ENST00000373555|GOLGA1 REV__ENSG00000136935|ENST00000373555|GOLGA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.701904296875 2 523.85787 1045.70119 NaN NaN NaN NaN NaN NaN NaN 163.96 1 158.91 158.41 159.41 -5.0446 0 0 0 0.23508 1 31936 31936 2.3027 0.24298 1 + 2777 16364 1529 1531 3101 3101 0.18016366404344808 AIKKKLKAF 9 Unmodified _AIKKKLKAF_ 0 0 0 REV__ENSG00000136935|ENST00000373555|GOLGA1 REV__ENSG00000136935|ENST00000373555|GOLGA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6928100585938 2 523.85787 1045.70119 NaN NaN NaN NaN NaN NaN NaN 164.05 1 159 158.5 159.5 -5.0446 0 0 0 0.23508 1 31960 31960 2.3027 0.24298 1 + 2778 16364 1529 1531 3102 3102 0.18016366404344808 AIKLGLKSSKF 11 Unmodified _AIKLGLKSSKF_ 0 0 0 REV__ENST00000609803.2_1_12:46120637-46120871:-|nuORF REV__ENST00000609803.2_1_12:46120637-46120871:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 596.338134765625 2 596.376623 1190.73869 NaN NaN NaN NaN NaN NaN NaN 168.49 1 168.49 167.99 168.99 0 0 0 0 0.22632 1 34512 34512 0.026206 0 1 + 2779 23488 1530 1532 3103 3103 0.15095412879304604 AIKLILLVVI 10 Unmodified _AIKLILLVVI_ 0 0 0 ENSG00000168329|ENST00000399220|CX3CR1;nc|ENSG00000168329|P49238-3|CX3CR1;nc|ENSG00000168329|P49238-4|CX3CR1;nc|ENSG00000168329|P49238-2|CX3CR1 ENSG00000168329|ENST00000399220|CX3CR1 ENSG00000168329|ENST00000399220|CX3CR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7784423828125 2 547.899203 1093.78385 NaN NaN NaN NaN NaN NaN NaN 63.308 1 60.311 59.811 60.811 -2.9975 0 0 0 2.8426 1 12230 12230 0.0013812 0.0013812 1 2780 5897 1531 1533 3104 3104 0.24071263412520238 AIKLILLVVI 10 Unmodified _AIKLILLVVI_ 0 0 0 ENSG00000168329|ENST00000399220|CX3CR1;nc|ENSG00000168329|P49238-3|CX3CR1;nc|ENSG00000168329|P49238-4|CX3CR1;nc|ENSG00000168329|P49238-2|CX3CR1 ENSG00000168329|ENST00000399220|CX3CR1 ENSG00000168329|ENST00000399220|CX3CR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7828979492188 2 547.899203 1093.78385 -0.0014 -7.6707E-07 -3.0163 -0.0016526 -3.0177 -0.0016534 548.3983854298618 44.904 0.10711 42.138 42.048 42.155 -2.7661 4 2 2 0 0 0 0.53419 1 8143 8143 0.13989 0.13989 1 957240 2781 5897 1531 1533 3105 3105 0.24071263412520238 AIKLKKKLV 9 Unmodified _AIKLKKKLV_ 0 0 0 REV__ENST00000374791.7_1_11:132205045-132205564:+|nuORF REV__ENST00000374791.7_1_11:132205045-132205564:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 521.1476440429688 2 520.881345 1039.74814 0.34956 0.00018208 -1.775 -0.00092459 -1.4255 -0.00074251 520.8805360895153 144.82 0.27515 139.88 139.69 139.97 -4.9445 9 7 2 0 0 0 0.88433 1 27998 27998 0.6015 0 1 1068700 + 2782 21058 1532 1534 3106 3106 0.2298522595549457 AILDHNPSI 9 Unmodified _AILDHNPSI_ 0 0 0 ENST00000578148.1_1_17:29858134-29858747:+|nuORF;nc|ENSG00000131242|Q86YS3-2|RAB11FIP4;ENSG00000131242|ENST00000621161|RAB11FIP4 ENST00000578148.1_1_17:29858134-29858747:+|nuORF ENST00000578148.1_1_17:29858134-29858747:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2640686035156 2 490.263999 978.513445 0.48439 0.00023748 -0.26982 -0.00013229 0.21456 0.00010519 490.2639075851975 81.641 0.6634 81.641 81.335 81.998 0 40 18 3 0 0 0 0.043105 3 15909 15859;15908;15909 74.2 28.179 1 4103400 2783 3665 1533 1535 3107;3108;3109 3109 0.023328834091330464 AILDHNPSI 9 Unmodified _AILDHNPSI_ 0 0 0 ENST00000578148.1_1_17:29858134-29858747:+|nuORF;nc|ENSG00000131242|Q86YS3-2|RAB11FIP4;ENSG00000131242|ENST00000621161|RAB11FIP4 ENST00000578148.1_1_17:29858134-29858747:+|nuORF ENST00000578148.1_1_17:29858134-29858747:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26385498046875 2 490.263999 978.513445 0.069424 3.4036E-05 -0.24418 -0.00011971 -0.17475 -8.5675E-05 490.2638454845085 85.278 0.56047 81.614 81.331 81.892 -3.6641 39 15 3 0 0 0 0.066912 3 16683 16641;16657;16683 65.474 19.804 1 3571200 2784 3665 1533 1535 3110;3111;3112 3112 0.023328834091330464 AILDHNPSI 9 Unmodified _AILDHNPSI_ 0 0 0 ENST00000578148.1_1_17:29858134-29858747:+|nuORF;nc|ENSG00000131242|Q86YS3-2|RAB11FIP4;ENSG00000131242|ENST00000621161|RAB11FIP4 ENST00000578148.1_1_17:29858134-29858747:+|nuORF ENST00000578148.1_1_17:29858134-29858747:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26409912109375 2 490.263999 978.513445 0.31515 0.0001545 -0.30977 -0.00015187 0.0053712 2.6333E-06 490.2638223387413 85.498 0.62528 81.584 81.285 81.91 -3.9136 42 17 3 0 0 0 0.043105 3 16258 16258;16304;16308 74.2 22.25 1 4113100 2785 3665 1533 1535 3113;3114;3115 3113 0.023328834091330464 AILDHNPSI 9 Unmodified _AILDHNPSI_ 0 0 0 ENST00000578148.1_1_17:29858134-29858747:+|nuORF;nc|ENSG00000131242|Q86YS3-2|RAB11FIP4;ENSG00000131242|ENST00000621161|RAB11FIP4 ENST00000578148.1_1_17:29858134-29858747:+|nuORF ENST00000578148.1_1_17:29858134-29858747:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.254638671875 2 490.263999 978.513445 -0.21129 -0.00010359 0.20459 0.0001003 -0.0067015 -3.2855E-06 490.26408946685854 85.382 0.54646 81.671 81.323 81.87 -3.7117 40 15 4 0 0 0 0.051332 3 16300 16300;16302;16306 70.332 30.375 1 2708400 2786 3665 1533 1535 3116;3117;3118 3116 0.023328834091330464 AILESGLNI 9 Unmodified _AILESGLNI_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23931884765625 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 145.4 1 140.73 140.23 141.23 -4.6694 0 0 0 0.1924 1 28822 28822 24.674 1.5255 1 + 2787 24099 1534 1536 3119 3119 0.055826516946467564 AILHGKLGEHE 11 Unmodified _AILHGKLGEHE_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1;TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2720947265625 2 602.327662 1202.64077 NaN NaN NaN NaN NaN NaN NaN 42.047 1 42.047 41.547 42.547 0 0 0 0 0.224 1 7855 7855 13.042 2.243 1 2788 3971 1535 1537 3120 3120 0.04755604283309367 AILHSLKFN 9 Unmodified _AILHSLKFN_ 0 0 0 ENSG00000145087|ENST00000471454|STXBP5L;nc|ENSG00000145087|Q9Y2K9|STXBP5L ENSG00000145087|ENST00000471454|STXBP5L ENSG00000145087|ENST00000471454|STXBP5L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.266357421875 2 521.805834 1041.59712 0.49067 0.00025604 -2.1015 -0.0010966 -1.6108 -0.00084053 521.8033240663416 159.81 0.1077 154.56 154.47 154.58 -5.2526 4 2 2 0 0 0 0.73309 1 31001 31001 4.756 1.1595 1 499260 2789 4592 1536 1538 3121 3121 0.0779803957684635 AILKENNK 8 Unmodified _AILKENNK_ 0 0 0 REV__tr|U7SLQ0|U7SLQ0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rphPE=3SV=1 REV__tr|U7SLQ0|U7SLQ0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rphPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2398986816406 2 465.274367 928.53418 0.11323 5.2683E-05 -0.072189 -3.3588E-05 0.041041 1.9095E-05 465.27427773285837 97.342 0.71471 93.108 92.818 93.533 -4.2348 33 20 2 0 0 0 0.30817 1 18596 18596 60.39 8.1212 1 6194000 + 2790 24947 1537 1539 3122 3122 0.06705473788792915 AILKFIRLI 9 Unmodified _AILKFIRLI_ 0 0 0 REV__SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant REV__SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7782592773438 2 543.87352 1085.73249 0.23583 0.00012826 -3.9592 -0.0021533 -3.7234 -0.002025 543.8722559533222 136.75 0.11108 132.11 132.06 132.17 -4.6399 4 2 2 0 0 0 0.55732 1 26987 26987 0.37959 0.25177 1 1247000 + 2791 18274 1538 1540 3123 3123 0.1930493943843885 AILKLYQRKK 10 Unmodified _AILKLYQRKK_ 0 0 0 ENST00000359242.7_2_1:86851271-86852694:-|nuORF;ENST00000488879.6_1_1:86850449-86852694:-|nuORF;ENST00000478286.2_1_1:86852553-86852694:-|nuORF ENST00000359242.7_2_1:86851271-86852694:-|nuORF ENST00000359242.7_2_1:86851271-86852694:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7586059570312 2 630.911165 1259.80778 NaN NaN NaN NaN NaN NaN NaN 105.17 1 100.79 100.29 101.29 -4.3764 0 0 0 2.8426 1 20160 20160 0.063865 0.020077 1 2792 8997 1539 1541 3124 3124 0.18826496898873302 AILKRRQRY 9 Unmodified _AILKRRQRY_ 0 0 0 REV__ENST00000469226.1_1_11:2189094-2189913:-|nuORF REV__ENST00000469226.1_1_11:2189094-2189913:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2985229492188 2 602.375281 1202.73601 NaN NaN NaN NaN NaN NaN NaN 41.367 1 41.367 40.867 41.867 0 0 0 0 0.23508 1 7714 7714 4.756 0 1 + 2793 18677 1540 1542 3125 3125 0.1427500226502616 AILNNEKL 8 Unmodified _AILNNEKL_ 0 0 0 ZDHHC11|p.V23A|1|0.43|ENSG00000188818|chr5:850535-850535|A/G|missense_variant;ENSG00000188818|ENST00000283441|ZDHHC11 ZDHHC11|p.V23A|1|0.43|ENSG00000188818|chr5:850535-850535|A/G|missense_variant ZDHHC11|p.V23A|1|0.43|ENSG00000188818|chr5:850535-850535|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2389221191406 2 457.768917 913.523281 0.70561 0.00032301 -0.49493 -0.00022656 0.21068 9.6445E-05 457.768631520442 106.97 0.7585 102.83 102.42 103.18 -4.135 54 21 4 0 0 0 0.41341 1 20593 20593 26.884 0 1 4218900 2794 7198 1541 1543 3126 3126 0.06306071414530834 AILTVVPKI 9 Unmodified _AILTVVPKI_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 477.3562316894531 2 477.323328 952.632104 NaN NaN NaN NaN NaN NaN NaN 153.85 1 148.58 148.08 149.08 -5.2669 0 0 0 0.19512 1 29829 29829 14.957 14.549 1 2795 4590 1542 1544 3127 3127 0.15389282384796843 AIMMATYE 8 Unmodified _AIMMATYE_ 0 0 0 nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36 nc|ENSG00000114120|Q96CQ1-4|SLC25A36 nc|ENSG00000114120|Q96CQ1-4|SLC25A36 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.244140625 2 465.208989 928.403426 NaN NaN NaN NaN NaN NaN NaN 107.64 1 103.22 102.72 103.72 -4.4121 0 0 0 0.23711 1 20652 20652 0.063987 0 1 2796 2776 1543 1545 3128 3128 -0.06364001245901818 AINGKVFDV 9 Unmodified _AINGKVFDV_ 0 0 0 nc|ENSG00000101856|O00264-2|PGRMC1;ENSG00000101856|ENST00000217971|PGRMC1 nc|ENSG00000101856|O00264-2|PGRMC1 nc|ENSG00000101856|O00264-2|PGRMC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7689514160156 2 481.768917 961.523281 0.36175 0.00017428 -0.34932 -0.00016829 0.012432 5.9893E-06 481.7687224722067 100.57 0.41924 100.57 100.27 100.69 0 16 11 2 0 0 0 0.46882 2 19744 19693;19744 21.537 4.5947 1 1647100 2797 2090 1544 1546 3129;3130 3130 0.040980714145121055 AINGKVFDV 9 Unmodified _AINGKVFDV_ 0 0 0 nc|ENSG00000101856|O00264-2|PGRMC1;ENSG00000101856|ENST00000217971|PGRMC1 nc|ENSG00000101856|O00264-2|PGRMC1 nc|ENSG00000101856|O00264-2|PGRMC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7686767578125 2 481.768917 961.523281 -0.14162 -6.823E-05 -0.22955 -0.00011059 -0.37117 -0.00017882 481.76881175582326 104.37 0.54475 100.15 99.89 100.44 -4.2183 26 15 3 0 0 0 0.39189 1 20538 20538 26.268 5.3969 1 1985000 2798 2090 1544 1546 3131 3131 0.040980714145121055 AINGKVFDV 9 Unmodified _AINGKVFDV_ 0 0 0 nc|ENSG00000101856|O00264-2|PGRMC1;ENSG00000101856|ENST00000217971|PGRMC1 nc|ENSG00000101856|O00264-2|PGRMC1 nc|ENSG00000101856|O00264-2|PGRMC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7698059082031 2 481.768917 961.523281 0.1973 9.5055E-05 0.059432 2.8632E-05 0.25674 0.00012369 481.7687958869694 104.48 0.58757 100.14 99.833 100.42 -4.346 23 16 2 0 0 0 0.27986 2 19983 19983;20030 32.786 4.2988 1 1319000 2799 2090 1544 1546 3132;3133 3132 0.040980714145121055 AINGKVFDV 9 Unmodified _AINGKVFDV_ 0 0 0 nc|ENSG00000101856|O00264-2|PGRMC1;ENSG00000101856|ENST00000217971|PGRMC1 nc|ENSG00000101856|O00264-2|PGRMC1 nc|ENSG00000101856|O00264-2|PGRMC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.778076171875 2 481.768917 961.523281 0.62088 0.00029912 -0.46465 -0.00022385 0.15623 7.5265E-05 481.76862976694764 104.18 0.64606 100.13 99.839 100.49 -4.0543 34 17 3 0 0 0 0.19171 2 20034 20034;20046 38.176 11.292 1 1555900 2800 2090 1544 1546 3134;3135 3134 0.040980714145121055 AINLPLSPI 9 Unmodified _AINLPLSPI_ 0 0 0 nc|ENSG00000197702|Q9NVD7-2|PARVA;ENST00000530755.5_1_11:12399134-12499642:+|nuORF;ENST00000533345.5_1_11:12419899-12534890:+|nuORF;ENSG00000197702|ENST00000334956|PARVA nc|ENSG00000197702|Q9NVD7-2|PARVA nc|ENSG00000197702|Q9NVD7-2|PARVA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 469.2890319824219 2 469.289485 936.564418 0.041704 1.9571E-05 -0.5912 -0.00027744 -0.54949 -0.00025787 469.2889434511892 116.45 0.42108 111.96 111.65 112.07 -4.486 16 11 2 0 0 0 0.44856 1 22923 22923 1.2148 0.36989 1 557110 2801 7391 1545 1547 3136 3136 0.09359832453992567 AINQWEGT 8 Unmodified _AINQWEGT_ 0 0 0 REV__nc|ENSG00000145990|Q9NXC2-2|GFOD1 REV__nc|ENSG00000145990|Q9NXC2-2|GFOD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23162841796875 2 459.719424 917.424296 -0.21119 -9.7089E-05 -0.82809 -0.00038069 -1.0393 -0.00047778 459.71969918054083 72.533 0.39487 69.222 68.954 69.349 -3.3107 16 10 2 0 0 0 0.97173 1 14085 14085 18.135 6.4947 1 1492100 + 2802 16865 1546 1548 3137 3137 -0.03771951550368158 AIPHYVTMY 9 Unmodified _AIPHYVTMY_ 0 0 0 ENSG00000101850|ENST00000467482|GPR143 ENSG00000101850|ENST00000467482|GPR143 ENSG00000101850|ENST00000467482|GPR143 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7681884765625 2 547.770603 1093.52665 NaN NaN NaN NaN NaN NaN NaN 105.85 1 101.58 101.08 102.08 -4.2638 0 0 0 0.23048 1 20834 20834 14.582 3.7578 1 2803 2089 1547 1549 3138 3138 -0.016370018031238942 AIPPSPGPSRC 11 Unmodified _AIPPSPGPSRC_ 0 0 0 REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2738647460938 2 541.276583 1080.53861 NaN NaN NaN NaN NaN NaN NaN 66.169 1 62.885 62.385 63.385 -3.2832 0 0 0 0.22632 1 12451 12451 0.03141 0 1 + 2804 23349 1548 1550 3139 3139 0.0015661494007872534 AIQIFGNLLY 10 Unmodified _AIQIFGNLLY_ 0 0 0 nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106 nc|ENSG00000103994|Q9H2Y7-2|ZNF106 nc|ENSG00000103994|Q9H2Y7-2|ZNF106 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3325805664062 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 71.737 1 68.109 67.609 68.609 -3.6275 0 0 0 2.8426 1 13537 13537 0.84494 0.80115 1 2805 2213 1549 1551 3140 3140 0.06935175545527272 AIQKAVSEGY 10 Unmodified _AIQKAVSEGY_ 0 0 0 ENST00000461985.1_1_1:20915583-20944969:+|nuORF;ENSG00000158825|ENST00000375071|CDA ENST00000461985.1_1_1:20915583-20944969:+|nuORF ENST00000461985.1_1_1:20915583-20944969:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2826538085938 2 533.282389 1064.55022 0.30844 0.00016448 -0.78717 -0.00041979 -0.47874 -0.0002553 533.2820414938337 75.941 0.55608 75.941 75.611 76.167 0 29 15 3 0 0 0 0.44731 1 14720 14720 27.629 4.4804 1 3608900 2806 5181 1550 1552 3141 3141 0.020531352350417365 AIQQRRKWDQL 11 Unmodified _AIQQRRKWDQL_ 0 0 0 REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.252197265625 3 481.27227 1440.79498 0.022532 1.0844E-05 -1.0956 -0.00052728 -1.0731 -0.00051643 481.271731199385 132.39 0.39346 127.75 127.48 127.88 -4.6399 17 10 2 0 0 0 0.79645 1 26050 26050 4.1166 1.2733 1 1969600 + 2807 16455 1551 1553 3142 3142 0.09221433768698262 AIQTRSESSS 10 Unmodified _AIQTRSESSS_ 0 0 0 ADAM32|p.S746I|1|0.16|ENSG00000197140|chr8:39274347-39274347|G/T|missense_variant ADAM32|p.S746I|1|0.16|ENSG00000197140|chr8:39274347-39274347|G/T|missense_variant ADAM32|p.S746I|1|0.16|ENSG00000197140|chr8:39274347-39274347|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2612915039062 2 533.262185 1064.50982 NaN NaN NaN NaN NaN NaN NaN 169.83 1 164.9 164.4 165.4 -4.9295 0 0 0 0.22583 1 33551 33551 13.906 3.7227 1 2808 57 1552 1554 3143 3143 -0.019858311553662134 AIRDKKQWFSF 11 Unmodified _AIRDKKQWFSF_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant;DNAH9|p.I3688Tfs*40|1|0.11|ENSG00000007174|chr17:11886915-11886924|ATCATGAACG/-|frameshift_variant;DNAH9|p.P2650Hfs*2|2|0.29|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 475.9259338378906 3 475.9261 1424.75647 NaN NaN NaN NaN NaN NaN NaN 161.48 1 156.25 155.75 156.75 -5.2283 0 0 0 0.23689 1 31339 31339 2.8433 0 1 2809 1016 1553 1555 3144 3144 0.06108128134155777 AIRDRFSRL 9 Unmodified _AIRDRFSRL_ 0 0 0 ENSG00000167930|ENST00000399932|FAM234A ENSG00000167930|ENST00000399932|FAM234A ENSG00000167930|ENST00000399932|FAM234A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 567.246337890625 2 567.330539 1132.64652 NaN NaN NaN NaN NaN NaN NaN 147.4 1 142.34 141.84 142.84 -5.0595 0 0 0 0.23508 1 28535 28535 10.074 1.3285 1 2810 5861 1554 1556 3145 3145 0.0855074758567298 AIRFLFPLLL 10 Unmodified _AIRFLFPLLL_ 0 0 0 ENST00000395136.6_2_1:70687096-70687432:+|nuORF ENST00000395136.6_2_1:70687096-70687432:+|nuORF ENST00000395136.6_2_1:70687096-70687432:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.284912109375 2 601.886627 1201.7587 NaN NaN NaN NaN NaN NaN NaN 50.665 1 47.784 47.284 48.284 -2.8816 0 0 0 2.8426 1 9614 9614 0.043787 0 1 2811 9425 1555 1557 3146 3146 0.16589208609957495 AIRHARTM 8 Unmodified _AIRHARTM_ 0 0 0 REV__ENSG00000047188|ENST00000161863|YTHDC2 REV__ENSG00000047188|ENST00000161863|YTHDC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7296142578125 2 478.266353 954.518153 NaN NaN NaN NaN NaN NaN NaN 119.25 1 114.75 114.25 115.25 -4.502 0 0 0 0.23025 1 23516 23516 0.62683 0.56284 1 + 2812 14058 1556 1558 3147 3147 0.0390748907092302 AIRNLERRN 9 Unmodified _AIRNLERRN_ 0 0 0 ENSG00000174225|ENST00000450049|ARL13A;nc|ENSG00000174225|Q5H913|ARL13A ENSG00000174225|ENST00000450049|ARL13A ENSG00000174225|ENST00000450049|ARL13A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.22320556640625 3 381.223139 1140.64759 -0.25776 -9.8263E-05 0.42023 0.0001602 0.16247 6.1939E-05 381.2233983735304 13.589 0.27371 13.589 13.446 13.719 0 13 7 2 0 0 0 0.74567 1 1981 1981 4.1895 0 1 643510 2813 6336 1557 1559 3148 3148 0.08288961954553997 AIRSCWETQ 9 Unmodified _AIRSCWETQ_ 0 0 0 nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8|DNAH14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7833251953125 2 547.258391 1092.50223 0.32374 0.00017717 -0.15473 -8.4676E-05 0.16901 9.2494E-05 547.2584676980215 67.538 0.45168 64.042 63.822 64.274 -3.4965 20 12 2 0 0 0 0.5428 1 12689 12689 4.897 3.1547 1 992780 2814 7016;12518 1558 1560 3149 3149 -0.04032261956649563 AISDGEKEI 9 Unmodified _AISDGEKEI_ 0 0 0 REV__nc|ENSG00000115919|Q16719-2|KYNU REV__nc|ENSG00000115919|Q16719-2|KYNU MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7819519042969 2 481.245472 960.476391 -0.10135 -4.8773E-05 0.060523 2.9127E-05 -0.040824 -1.9647E-05 481.2454865115772 95.925 1.4896 95.925 95.456 96.945 0 129 42 5 0 0 0 0.13832 1 18931 18931 2.8827 0 1 164850000 + 2815 15456 1559 1561 3150 3150 -0.005428329272717747 AISESNINL 9 Unmodified _AISESNINL_ 0 0 0 ENST00000460243.1_1_3:53262881-53263452:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT ENST00000460243.1_1_3:53262881-53263452:-|nuORF ENST00000460243.1_1_3:53262881-53263452:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2548522949219 2 480.753464 959.492375 -0.16832 -8.0923E-05 0.43748 0.00021032 0.26915 0.0001294 480.75365601213696 95.357 0.75858 95.357 95.042 95.801 0 42 21 3 0 0 0 0.011913 2 18672 18653;18672 100.37 11.468 1 4516200 2816 5482 1560 1562 3151;3152 3152 0.011008733096218748 AISESNINL 9 Unmodified _AISESNINL_ 0 0 0 ENST00000460243.1_1_3:53262881-53263452:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT ENST00000460243.1_1_3:53262881-53263452:-|nuORF ENST00000460243.1_1_3:53262881-53263452:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2550048828125 2 480.753464 959.492375 0.062711 3.0148E-05 0.38579 0.00018547 0.4485 0.00021562 480.7536415479043 99.314 0.97282 95.181 94.747 95.719 -4.1326 56 27 3 0 0 0 7.7918E-08 4 19526 19473;19513;19514;19526 149.99 37.401 1 8225100 2817 5482 1560 1562 3153;3154;3155;3156 3156 0.011008733096218748 AISESNINL 9 Unmodified _AISESNINL_ 0 0 0 ENST00000460243.1_1_3:53262881-53263452:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT ENST00000460243.1_1_3:53262881-53263452:-|nuORF ENST00000460243.1_1_3:53262881-53263452:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23370361328125 2 480.753464 959.492375 0.26501 0.0001274 -0.047219 -2.2701E-05 0.21779 0.0001047 480.7534113028717 99.604 0.74317 95.335 94.963 95.706 -4.2692 48 21 3 0 0 0 7.7918E-08 4 19017 19000;19017;19047;19050 149.99 49.623 1 6281400 2818 5482 1560 1562 3157;3158;3159;3160 3158 0.011008733096218748 AISESNINL 9 Unmodified _AISESNINL_ 0 0 0 ENST00000460243.1_1_3:53262881-53263452:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT ENST00000460243.1_1_3:53262881-53263452:-|nuORF ENST00000460243.1_1_3:53262881-53263452:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2550964355469 2 480.753464 959.492375 0.15092 7.2556E-05 0.18723 9.0012E-05 0.33815 0.00016257 480.753525923607 99.301 0.89731 95.344 94.899 95.796 -3.9564 54 25 3 0 0 0 7.7918E-08 3 19080 19008;19031;19080 149.99 37.401 1 6026200 2819 5482 1560 1562 3161;3162;3163 3163 0.011008733096218748 AISIQIES 8 Unmodified _AISIQIES_ 0 0 0 REV__nc|ENSG00000168944|Q8N960-3|CEP120 REV__nc|ENSG00000168944|Q8N960-3|CEP120 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.0850524902344 2 430.739825 859.465098 -0.071002 -3.0583E-05 -0.047735 -2.0561E-05 -0.11874 -5.1145E-05 430.73972925625975 144.88 0.41832 140.21 140.06 140.48 -4.6694 15 11 2 0 0 0 0.98792 1 28683 28683 2.3027 0 1 1870300 + 2820 13373 1561 1563 3164 3164 0.02974389769235586 AISKLQENY 9 Unmodified _AISKLQENY_ 0 0 0 ENST00000520776.5_1_17:45405719-45473360:+|nuORF;nc|ENSG00000178852|Q8IY85-2|EFCAB13;ENSG00000178852|ENST00000331493|EFCAB13 ENST00000520776.5_1_17:45405719-45473360:+|nuORF ENST00000520776.5_1_17:45405719-45473360:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2808227539062 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 112.32 1 107.87 107.37 108.37 -4.4539 0 0 0 0.19684 1 22136 22136 1.2148 0 1 2821 6595 1562 1564 3165 3165 0.020531352350417365 AISSSSLY 8 Unmodified _AISSSSLY_ 0 0 0 CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant;CRTC1|p.S572Afs*6|3|0.59|ENSG00000105662|chr19:18777183-18777183|C/-|frameshift_variant;ENSG00000105662|ENST00000321949|CRTC1;nc|ENSG00000105662|Q6UUV9-2|CRTC1;nc|ENSG00000105662|Q6UUV9-3|CRTC1 CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 414.2693786621094 2 414.210901 826.407249 NaN NaN NaN NaN NaN NaN NaN 94.459 1 90.615 90.115 91.115 -3.844 0 0 0 0.21486 1 18123 18123 6.3541 0 1 2822 727 1563 1565 3166 3166 -0.012898721561782622 AISVSYFE 8 Unmodified _AISVSYFE_ 0 0 0 PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant;ENSG00000134627|ENST00000299001|PIWIL4;nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4;nc|ENSG00000134627|Q7Z3Z4-2|PIWIL4 PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2256164550781 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 39.074 1 36.632 36.132 37.132 -2.4419 0 0 0 0.23025 1 6970 6970 0.68139 0 1 2823 3865 1564 1566 3167 3167 -0.022092991220915792 AITDILFN 8 Unmodified _AITDILFN_ 0 0 0 REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7485046386719 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 126.06 1 121.46 120.96 121.96 -4.5984 0 0 0 0.21486 1 24854 24854 7.9102 2.1497 1 + 2824 13715 1565 1567 3168 3168 0.029309801489034726 AITLGRKKS 9 Unmodified _AITLGRKKS_ 0 0 0 nc|ENSG00000133460|Q9BYW1|SLC2A11;ENSG00000133460|ENST00000316185|SLC2A11;nc|ENSG00000133460|Q9BYW1-4|SLC2A11;nc|ENSG00000133460|Q9BYW1-2|SLC2A11;ENST00000461809.5_1_22:24200186-24224826:+|nuORF;ENST00000405286.6_1_22:24199637-24224826:+|nuORF nc|ENSG00000133460|Q9BYW1|SLC2A11 nc|ENSG00000133460|Q9BYW1|SLC2A11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 486.7786865234375 2 487.311284 972.608014 0.2253 0.00010979 1.4348 0.0006992 1.6601 0.00080899 487.31165882028944 148.71 0.68239 144 143.68 144.36 -4.7095 22 18 2 0 0 0 0.59847 1 29557 29557 0.40827 0 1 1869700 2825 3805 1566 1568 3169 3169 0.12061441951129837 AITLIIILPV 10 Unmodified _AITLIIILPV_ 0 0 0 REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2 REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2860107421875 2 533.367736 1064.72092 0.11088 5.9137E-05 2.7788 0.0014821 2.8897 0.0015413 533.3675269314375 155.79 0.20956 155.79 155.62 155.83 0 6 5 2 0 0 0 0.91149 1 31239 31239 1.8442 0.19162 1 1942300 + 2826 16143 1567 1569 3170 3170 0.19114697624468135 AITMEGLPFY 10 Unmodified _AITMEGLPFY_ 0 0 0 REV__ENST00000556777.1_1_14:22932002-22932101:-|nuORF REV__ENST00000556777.1_1_14:22932002-22932101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.20440673828125 3 381.191454 1140.55253 NaN NaN NaN NaN NaN NaN NaN 62.799 1 62.799 62.299 63.299 0 0 0 0 0.22588 1 12065 12065 3.8763 1.1411 1 + 2827 23006 1568 1570 3171 3171 -0.012121523515133958 AITNNEKTA 9 Unmodified _AITNNEKTA_ 0 0 0 tr|U7T3Z9|U7T3Z9_FUSNUPyruvatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00320PE=3SV=1 tr|U7T3Z9|U7T3Z9_FUSNUPyruvatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00320PE=3SV=1 tr|U7T3Z9|U7T3Z9_FUSNUPyruvatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00320PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7753601074219 2 481.251089 960.487624 -0.20207 -9.7244E-05 -1.0036 -0.00048299 -1.2057 -0.00058023 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 0.15274 1 7460 7460 43.772 10.987 1 85144000 2828 26423 1569 1571 3172 3172 0.005799891668630153 AITQSYQNY 9 Unmodified _AITQSYQNY_ 0 0 0 REV__ENST00000420610.1_1_Y:14088999-14090148:+|nuORF REV__ENST00000420610.1_1_Y:14088999-14090148:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7830200195312 2 544.256371 1086.49819 0.58667 0.0003193 -0.32998 -0.0001796 0.25669 0.00013971 544.2561032898798 43.496 0.52264 43.496 43.19 43.712 0 21 14 2 0 0 0 0.65155 1 8110 8110 15.847 5.7733 1 903490 + 2829 21504 1570 1572 3173 3173 -0.04160028178716857 AITVHYLDL 9 Unmodified _AITVHYLDL_ 0 0 0 ALCAM|p.G535Wfs*33|1|0.3|ENSG00000170017|chr3:105552521-105552522|-/T|frameshift_variant;nc|ENSG00000170017|Q13740-2|ALCAM;ENSG00000170017|ENST00000306107|ALCAM ALCAM|p.G535Wfs*33|1|0.3|ENSG00000170017|chr3:105552521-105552522|-/T|frameshift_variant ALCAM|p.G535Wfs*33|1|0.3|ENSG00000170017|chr3:105552521-105552522|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2762451171875 2 522.78985 1043.56515 -0.048903 -2.5566E-05 0.97102 0.00050764 0.92212 0.00048207 523.2930187044949 156.78 0.21799 151.99 151.88 152.1 -4.7885 7 5 2 0 0 0 0.8319 1 31157 31157 12.532 5.2423 1 734340 2830 118 1571 1573 3174 3174 0.04510627103036313 AIVDKVPSV 9 Unmodified _AIVDKVPSV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2361755371094 2 464.279118 926.543683 0.072807 3.3803E-05 -0.2385 -0.00011073 -0.16569 -7.6926E-05 464.2789469688215 87.017 2.1144 87.017 86.178 88.292 0 210 60 5 0 0 0 0.019708 2 17018 16874;17018 92.653 44.307 1 151870000 2831 6743 1572 1574 3175;3176 3176 0.07747242074333371 AIVDKVSSV 9 Unmodified _AIVDKVSSV_ 0 0 0 nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000158623|ENST00000425248|COPG2 nc|ENSG00000158623|Q9UBF2-2|COPG2 nc|ENSG00000158623|Q9UBF2-2|COPG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2388610839844 2 459.26875 916.522947 -0.065493 -3.0079E-05 0.40107 0.0001842 0.33558 0.00015412 459.2688499941694 60.125 0.63218 60.125 59.784 60.416 0 35 17 3 0 0 0 0.45972 1 11492 11492 10.016 8.8014 1 2195900 2832 5173 1573 1575 3177 3177 0.06134651694674176 AIVHYTILN 9 Unmodified _AIVHYTILN_ 0 0 0 KDELC2|p.P302Lfs*16|1|0.05|ENSG00000178202|chr11:108481373-108481374|-/GATATTTCTTTTTCCAAGAGAAAGAAAAGGA|frameshift_variant;KDELC2|p.S303Vfs*36|1|0.07|ENSG00000178202|chr11:108481371-108481372|-/ATTAC|frameshift_variant;ENSG00000178202|ENST00000323468|POGLUT3;nc|ENSG00000178202|Q7Z4H8-3|POGLUT3;nc|ENSG00000178202|Q7Z4H8-2|POGLUT3 KDELC2|p.P302Lfs*16|1|0.05|ENSG00000178202|chr11:108481373-108481374|-/GATATTTCTTTTTCCAAGAGAAAGAAAAGGA|frameshift_variant KDELC2|p.P302Lfs*16|1|0.05|ENSG00000178202|chr11:108481373-108481374|-/GATATTTCTTTTTCCAAGAGAAAGAAAAGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27978515625 2 522.297842 1042.58113 NaN NaN NaN NaN NaN NaN NaN 157.14 1 151.87 151.37 152.37 -5.2712 0 0 0 0.23508 1 30482 30482 12.532 2.4576 1 2833 6566 1574 1576 3178 3178 0.06154333339964069 AIVKLFLKKPS 11 Unmodified _AIVKLFLKKPS_ 0 0 0 AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1 AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7728881835938 2 622.410466 1242.80638 NaN NaN NaN NaN NaN NaN NaN 83.801 1 80.194 79.694 80.694 -3.6079 0 0 0 0.23698 1 16385 16385 1.3295 0 1 2834 174 1575 1577 3179 3179 0.19468862810140308 AIVKNVPVLLL 11 Unmodified _AIVKNVPVLLL_ 0 0 0 REV__ABCC10|p.Q583Rfs*41|1|0.34|ENSG00000124574|chr6:43435885-43435885|C/-|frameshift_variant REV__ABCC10|p.Q583Rfs*41|1|0.34|ENSG00000124574|chr6:43435885-43435885|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2552490234375 2 589.897192 1177.77983 NaN NaN NaN NaN NaN NaN NaN 93.072 1 93.072 92.572 93.572 0 0 0 0 0.23634 1 18203 18203 3.2813 1.2216 1 + 2835 12898 1576 1578 3180 3180 0.1980517391880312 AIVNKETAVV 10 Unmodified _AIVNKETAVV_ 0 0 0 REV__EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant REV__EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2786254882812 2 522.308406 1042.60226 NaN NaN NaN NaN NaN NaN NaN 152.53 1 147.3 146.8 147.8 -5.2365 0 0 0 0.22588 1 29574 29574 4.897 0 1 + 2836 13804 1577 1579 3181 3181 0.0826629864880033 AIVNKLSDP 9 Unmodified _AIVNKLSDP_ 0 0 0 REV__SLFN13|p.A276T|1|0.26|ENSG00000154760|chr17:35444855-35444855|C/T|missense_variant REV__SLFN13|p.A276T|1|0.26|ENSG00000154760|chr17:35444855-35444855|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72296142578125 2 478.7742 955.533846 0.21141 0.00010122 -0.50747 -0.00024296 -0.29606 -0.00014174 478.77378137426723 37.738 0.44879 35.4 35.153 35.602 -2.3375 17 12 2 0 0 0 0.69192 1 6683 6683 20.454 0 1 805730 + 2837 17194 1578 1580 3182 3182 0.054300540689382615 AIVNNLFF 8 Unmodified _AIVNNLFF_ 0 0 0 REV__ENST00000289968.10_1_16:24930781-24931099:-|nuORF REV__ENST00000289968.10_1_16:24930781-24931099:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.1756896972656 3 313.176244 936.506903 NaN NaN NaN NaN NaN NaN NaN 76.293 1 72.878 72.378 73.378 -3.4151 0 0 0 0.21486 1 14890 14890 4.3292 0.38484 1 + 2838 20348 1579 1581 3183 3183 0.03610990248421331 AIVNNLFFFFF 11 Unmodified _AIVNNLFFFFF_ 0 0 0 REV__ENST00000289968.10_1_16:24930781-24931099:-|nuORF REV__ENST00000289968.10_1_16:24930781-24931099:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2445373535156 3 460.244658 1377.71214 NaN NaN NaN NaN NaN NaN NaN 92.626 1 88.817 88.317 89.317 -3.8083 0 0 0 0.22632 1 17750 17750 0.026206 0 1 + 2839 20348 1580 1582 3184 3184 0.03839723987948673 AIVPRETS 8 Unmodified _AIVPRETS_ 0 0 0 nc|ENSG00000184507|Q86Y26|NUTM1;nc|ENSG00000184507|Q86Y26-3|NUTM1;ENSG00000184507|ENST00000537011|NUTM1 nc|ENSG00000184507|Q86Y26|NUTM1 nc|ENSG00000184507|Q86Y26|NUTM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22833251953125 2 436.745442 871.476331 -0.1273 -5.56E-05 0.14155 6.1821E-05 0.014245 6.2214E-06 436.7454608112436 78.094 0.9662 74.631 74.181 75.148 -3.4633 76 26 4 0 0 0 0.44108 1 15190 15190 30.637 0 1 23031000 2840 6915 1581 1583 3185 3185 0.03545211863388431 AIVSGILPRVG 11 Unmodified _AIVSGILPRVG_ 0 0 0 ENST00000367091.7_1_1:207077925-207078012:-|nuORF ENST00000367091.7_1_1:207077925-207078012:-|nuORF ENST00000367091.7_1_1:207077925-207078012:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2683715820312 2 541.340041 1080.66553 NaN NaN NaN NaN NaN NaN NaN 155.98 1 150.69 150.19 151.19 -5.2854 0 0 0 0.22632 1 30254 30254 0.0059557 0.0045745 1 2841 9056 1582 1584 3186 3186 0.1284228415670441 AIVSGILPRVG 11 Unmodified _AIVSGILPRVG_ 0 0 0 ENST00000367091.7_1_1:207077925-207078012:-|nuORF ENST00000367091.7_1_1:207077925-207078012:-|nuORF ENST00000367091.7_1_1:207077925-207078012:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.27978515625 2 541.340041 1080.66553 NaN NaN NaN NaN NaN NaN NaN 156.01 1 150.73 150.23 151.23 -5.2854 0 0 0 0.224 1 30261 30261 13.042 4.2971 1 2842 9056 1582 1584 3187 3187 0.1284228415670441 AIVYNITL 8 Unmodified _AIVYNITL_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7674560546875 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 127.02 1 122.41 121.91 122.91 -4.6172 0 0 0 0.21323 1 25048 25048 14.582 0 1 2843 5519 1583 1585 3188 3188 0.06567857045604342 AIWELEIRKYY 11 Unmodified _AIWELEIRKYY_ 0 0 0 tr|U7T3P8|U7T3P8_FUSNURibonucleaseIIIfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00208PE=4SV=1 tr|U7T3P8|U7T3P8_FUSNURibonucleaseIIIfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00208PE=4SV=1 tr|U7T3P8|U7T3P8_FUSNURibonucleaseIIIfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00208PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4027709960938 2 742.400827 1482.7871 NaN NaN NaN NaN NaN NaN NaN 138.91 1 133.96 133.46 134.46 -4.952 0 0 0 0.23634 1 26718 26718 3.2813 0.28607 1 2844 26412 1584 1586 3189 3189 0.0650186172854319 AIWNNIQEV 9 Unmodified _AIWNNIQEV_ 0 0 0 ANO6|p.V892*|1|0.32|ENSG00000177119|chr12:45429248-45429248|G/-|frameshift_variant;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6 ANO6|p.V892*|1|0.32|ENSG00000177119|chr12:45429248-45429248|G/-|frameshift_variant ANO6|p.V892*|1|0.32|ENSG00000177119|chr12:45429248-45429248|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.783447265625 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 149.98 1 145.25 144.75 145.75 -4.7323 0 0 0 0.18966 1 29785 29785 14.987 14.721 1 2845 166 1585 1587 3190 3190 0.01120554954900399 AIYHKDHFYYI 11 Unmodified _AIYHKDHFYYI_ 0 0 0 XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant;ENST00000575674.1_1_16:17292067-17352884:-|nuORF;ENSG00000103489|ENST00000261381|XYLT1 XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.271240234375 3 490.578588 1468.71394 NaN NaN NaN NaN NaN NaN NaN 158.22 1 158.22 157.72 158.72 0 0 0 0 0.22632 1 31764 31764 0.026206 0 1 2846 26587 1586 1588 3191 3191 -0.0016726699404898682 AIYQGLVY 8 Unmodified _AIYQGLVY_ 0 0 0 ENSG00000099338|ENST00000409235|CATSPERG;ENST00000412458.6_1_19:38845366-38860119:+|nuORF;CATSPERG|p.P884Qfs*18|1|0.48|ENSG00000099338|chr19:38367188-38367188|C/-|frameshift_variant;ENST00000471517.5_1_19:38845366-38853372:+|nuORF ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2581481933594 2 463.752736 925.490919 0.12198 5.6569E-05 -0.0093459 -4.3342E-06 0.11264 5.2235E-05 463.7526143788962 86.063 1.4419 86.063 85.433 86.875 0 122 40 4 0 0 0 0.64227 2 16833 16739;16833 19.439 2.4967 1 26501000 2847 1888 1587 1589 3192;3193 3193 0.025192840115323634 AIYQGLVY 8 Unmodified _AIYQGLVY_ 0 0 0 ENSG00000099338|ENST00000409235|CATSPERG;ENST00000412458.6_1_19:38845366-38860119:+|nuORF;CATSPERG|p.P884Qfs*18|1|0.48|ENSG00000099338|chr19:38367188-38367188|C/-|frameshift_variant;ENST00000471517.5_1_19:38845366-38853372:+|nuORF ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2586975097656 2 463.752736 925.490919 -0.13899 -6.4456E-05 0.30002 0.00013913 0.16103 7.4678E-05 463.7527521688039 90.09 1.3878 86.231 85.508 86.896 -3.8595 123 38 4 0 0 0 0.53444 2 17597 17550;17597 26.341 4.1604 1 28774000 2848 1888 1587 1589 3194;3195 3195 0.025192840115323634 AIYQGLVY 8 Unmodified _AIYQGLVY_ 0 0 0 ENSG00000099338|ENST00000409235|CATSPERG;ENST00000412458.6_1_19:38845366-38860119:+|nuORF;CATSPERG|p.P884Qfs*18|1|0.48|ENSG00000099338|chr19:38367188-38367188|C/-|frameshift_variant;ENST00000471517.5_1_19:38845366-38853372:+|nuORF ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2579040527344 2 463.752736 925.490919 0.17979 8.3378E-05 -0.12563 -5.8263E-05 0.054157 2.5116E-05 463.7525689878615 89.886 1.5406 86.108 85.313 86.854 -3.7779 138 43 4 0 0 0 0.64227 1 17172 17172 19.439 3.5918 1 29379000 2849 1888 1587 1589 3196 3196 0.025192840115323634 AKACPYSLLL 10 Unmodified _AKACPYSLLL_ 0 0 0 REV__nc|ENSG00000060656|Q92729-3|PTPRU REV__nc|ENSG00000060656|Q92729-3|PTPRU MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2050476074219 3 360.203694 1077.58925 NaN NaN NaN NaN NaN NaN NaN 16.414 1 16.414 15.914 16.914 0 0 0 0 0.22588 1 2549 2549 3.3196 0.58445 1 + 2850 14145 1588 1590 3197 3197 0.05356144265056173 AKAKRDVPAPG 11 Unmodified _AKAKRDVPAPG_ 0 0 0 REV__ENSG00000129993|ENST00000268679|CBFA2T3 REV__ENSG00000129993|ENST00000268679|CBFA2T3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 555.4898681640625 2 555.324922 1108.63529 0.20341 0.00011296 3.8776 0.0021533 4.081 0.0022663 555.8297597464689 166.04 0.17548 161.06 160.98 161.16 -4.9811 5 4 2 0 0 0 0.95337 1 32515 32515 1.1933 0 1 9968100 + 2851 15980 1589 1591 3198 3198 0.08531925491502079 AKANQISPS 9 Unmodified _AKANQISPS_ 0 0 0 ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L;BCL9L|p.P894Lfs*17|1|0.29|ENSG00000186174|chr11:118901062-118901062|G/-|frameshift_variant;nc|ENSG00000186174|Q86UU0-3|BCL9L;BCL9L|p.P1355Lfs*6|1|0.23|ENSG00000186174|chr11:118898851-118898851|G/-|frameshift_variant;BCL9L|p.P1249Lfs*32|1|0.58|ENSG00000186174|chr11:118899171-118899171|C/-|frameshift_variant;BCL9L|p.P1198Lfs*5|3|0.34|ENSG00000186174|chr11:118899327-118899327|C/-|frameshift_variant;BCL9L|p.P1127Hfs*21|1|0.43|ENSG00000186174|chr11:118899943-118899943|G/-|frameshift_variant;BCL9L|p.G481Afs*21|1|0.4|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant;BCL9L|p.P483Rfs*19|1|0.35|ENSG00000186174|chr11:118902295-118902295|G/-|frameshift_variant;BCL9L|p.Q452Sfs*11|3|0.43|ENSG00000186174|chr11:118902389-118902389|G/-|frameshift_variant;BCL9L|p.G442Afs*21|2|0.19|ENSG00000186174|chr11:118902418-118902418|C/-|frameshift_variant;BCL9L|p.P449Lfs*14|1|0.26|ENSG00000186174|chr11:118902397-118902397|G/-|frameshift_variant;BCL9L|p.E397Rfs*22|1|0.71|ENSG00000186174|chr11:118902554-118902555|-/T|frameshift_variant;BCL9L|p.P288Rfs*4|1|0.38|ENSG00000186174|chr11:118902880-118902880|G/-|frameshift_variant;ENST00000527266.1_1_11:118773580-118779321:-|nuORF;BCL9L|p.G230Afs*62|2|0.25|ENSG00000186174|chr11:118903296-118903296|C/-|frameshift_variant;BCL9L|p.V101Cfs*11|1|0.39|ENSG00000186174|chr11:118908381-118908381|C/-|frameshift_variant ENSG00000186174|ENST00000683865|BCL9L ENSG00000186174|ENST00000683865|BCL9L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22637939453125 2 458.248349 914.482145 0.15594 7.1457E-05 0.13627 6.2445E-05 0.2922 0.0001339 458.24838210209754 64.695 0.91254 61.237 60.733 61.646 -3.4581 61 25 3 0 0 0 0.12935 1 12045 12045 0.37959 0 1 13853000 2852 7040 1590 1592 3199 3199 0.021483103750369992 AKASTKSG 8 Unmodified _AKASTKSG_ 0 0 0 REV__ENSG00000151491|ENST00000281172|EPS8 REV__ENSG00000151491|ENST00000281172|EPS8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21258544921875 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 57.313 1 54.419 53.919 54.919 -2.8944 0 0 0 0.23312 1 10998 10998 6.2058 0 1 + 2853 17071 1591 1593 3200 3200 0.023649672835176716 AKASVPTI 8 Unmodified _AKASVPTI_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 393.2908020019531 2 393.739628 785.464704 -0.29927 -0.00011783 0.28497 0.0001122 -0.014298 -5.6298E-06 393.73966084087994 143.57 0.94785 138.67 138.34 139.29 -4.8982 57 26 4 0 0 0 0.93477 1 27734 27734 18.135 0 1 26604000 2854 4065 1592 1594 3201 3201 0.0633901484004582 AKATERTLVY 10 Unmodified _AKATERTLVY_ 0 0 0 ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF;ENSG00000168758|ENST00000305476|SEMA4C ENST00000467747.1_1_2:97526365-97527817:-|nuORF ENST00000467747.1_1_2:97526365-97527817:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.32568359375 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 127.43 1 127.43 126.93 127.93 0 0 0 0 2.8426 1 25153 25153 0.84494 0.71713 1 2855 5932 1593 1595 3202 3202 0.06533086051808823 AKATERTLVY 10 Unmodified _AKATERTLVY_ 0 0 0 ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF;ENSG00000168758|ENST00000305476|SEMA4C ENST00000467747.1_1_2:97526365-97527817:-|nuORF ENST00000467747.1_1_2:97526365-97527817:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.326171875 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 131.06 1 126.22 125.72 126.72 -4.8355 0 0 0 2.8426 1 25164 25164 0.26539 0 1 2856 5932 1593 1595 3203 3203 0.06533086051808823 AKAWLAGG 8 Unmodified _AKAWLAGG_ 0 0 0 REV__ENST00000487002.1_1_1:155279413-155279551:+|nuORF REV__ENST00000487002.1_1_1:155279413-155279551:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.2205810546875 2 387.218863 772.423173 NaN NaN NaN NaN NaN NaN NaN 93.714 1 89.723 89.223 90.223 -3.9907 0 0 0 0.23312 1 18359 18359 6.2058 4.8763 1 + 2857 22247 1594 1596 3204 3204 0.027858788713729155 AKCGERSV 8 Unmodified _AKCGERSV_ 0 0 0 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2519226074219 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 46.581 1 43.74 43.24 44.24 -2.8409 0 0 0 0.23664 1 8789 8789 3.2813 3.143 1 2858 7406 1595 1597 3205 3205 -0.012835877025963782 AKEEVWSI 8 Unmodified _AKEEVWSI_ 0 0 0 REV__ENST00000395094.3_1_16:30543822-30545758:-|nuORF REV__ENST00000395094.3_1_16:30543822-30545758:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2540588378906 2 481.2531 960.491647 0.14011 6.7429E-05 0.35542 0.00017105 0.49553 0.00023848 481.25320431507856 83.296 1.4409 79.422 78.568 80.009 -3.8736 135 40 4 0 0 0 0.58432 1 15689 15689 23.148 1.4018 1 48806000 + 2859 18132 1596 1598 3206 3206 0.00982078660570096 AKEKKKRRRRK 11 Unmodified _AKEKKKRRRRK_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.40087890625 2 742.492042 1482.96953 NaN NaN NaN NaN NaN NaN NaN 127.56 1 122.77 122.27 123.27 -4.7958 0 0 0 0.23698 1 24483 24483 0.30703 0.30703 1 2860 1613 1597 1599 3207 3207 0.24736478704494402 AKEMVANWRHH 11 Unmodified _AKEMVANWRHH_ 0 0 0 RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.3|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23095703125 3 460.231417 1377.67242 NaN NaN NaN NaN NaN NaN NaN 23.932 1 22.144 21.644 22.644 -1.7886 0 0 0 0.22632 1 3872 3872 1.4074 1.3812 1 2861 6072 1598 1600 3208 3208 -0.0013072623439711606 AKEQLSSAQ 9 Unmodified _AKEQLSSAQ_ 0 0 0 REV__ENST00000469908.5_2_16:2391122-2391338:+|nuORF REV__ENST00000469908.5_2_16:2391122-2391338:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2364807128906 2 481.251089 960.487624 0.039845 1.9176E-05 -1.0501 -0.00050534 -1.0102 -0.00048616 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 0.13201 1 7070 7070 4.477 0 1 69706000 + 2862 22022 1599 1601 3209 3209 0.005799891668630153 AKFNLVSGSS 10 Unmodified _AKFNLVSGSS_ 0 0 0 REV__tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 REV__tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 505.7330322265625 2 505.269281 1008.52401 0.19319 9.7613E-05 0.20497 0.00010356 0.39816 0.00020118 505.2694139635442 64.634 0.48463 61.351 61.103 61.587 -3.2832 20 13 2 0 0 0 1.1216 1 12167 12167 0.26539 0 1 691890 + 2863 24850 1600 1602 3210 3210 0.02008866063579262 AKGDKTAYQV 10 Unmodified _AKGDKTAYQV_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2747802734375 2 540.787838 1079.56112 0.45882 0.00024812 -0.88523 -0.00047872 -0.42641 -0.0002306 540.7872383322606 70.138 0.41751 66.558 66.242 66.66 -3.5798 25 11 4 0 0 0 0.57141 1 13187 13187 31.268 12.011 1 2565100 + 2864 17662 1601 1603 3211 3211 0.024525376093151863 AKGKKSSIT 9 Unmodified _AKGKKSSIT_ 0 0 0 tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1 tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1 tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24365234375 2 460.282192 918.549831 NaN NaN NaN NaN NaN NaN NaN 108.41 1 108.41 107.91 108.91 0 0 0 0 0.19632 1 21319 21319 0.073264 0 1 2865 26083 1602 1604 3212 3212 0.08729760305857326 AKGLYWTLN 9 Unmodified _AKGLYWTLN_ 0 0 0 CRLF1|p.E72K|1|0.27|ENSG00000006016|chr19:18599748-18599748|C/T|missense_variant CRLF1|p.E72K|1|0.27|ENSG00000006016|chr19:18599748-18599748|C/T|missense_variant CRLF1|p.E72K|1|0.27|ENSG00000006016|chr19:18599748-18599748|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2675170898438 2 533.290017 1064.56548 NaN NaN NaN NaN NaN NaN NaN 141.26 1 141.26 140.76 141.76 0 0 0 0 0.19711 1 28138 28138 0.12781 0 1 2866 726 1603 1605 3213 3213 0.03578046822917713 AKGNLREFLR 10 Unmodified _AKGNLREFLR_ 0 0 0 nc|ENSG00000068078|P22607-2|FGFR3;nc|ENSG00000068078|P22607-3|FGFR3;FGFR3|p.G697Afs*11|1|0.09|ENSG00000068078|chr4:1806600-1806600|C/-|frameshift_variant;nc|ENSG00000068078|P22607-4|FGFR3;ENSG00000068078|ENST00000440486|FGFR3;FGFR4|p.G687Afs*35|1|0.23|ENSG00000160867|chr5:177096644-177096644|G/-|frameshift_variant;FGFR4|p.E717Rfs*8|1|0.44|ENSG00000160867|chr5:177096729-177096730|-/C|frameshift_variant;nc|ENSG00000160867|P22455-2|FGFR4;ENSG00000160867|ENST00000292408|FGFR4 nc|ENSG00000068078|P22607-2|FGFR3 nc|ENSG00000068078|P22607-2|FGFR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2748413085938 2 602.351471 1202.68839 NaN NaN NaN NaN NaN NaN NaN 133.65 1 129.01 128.51 129.51 -4.6399 0 0 0 0.22588 1 26355 26355 4.897 0.56777 1 2867 12231 1604 1606 3214 3214 0.09515303274156395 AKGRRSLRVDS 11 Unmodified _AKGRRSLRVDS_ 0 0 0 REV__ENST00000459858.1_1_9:134404461-134406630:-|nuORF REV__ENST00000459858.1_1_9:134404461-134406630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.8619995117188 2 622.862734 1243.71092 NaN NaN NaN NaN NaN NaN NaN 174.93 1 174.93 174.43 175.43 0 0 0 0 0.22765 1 36233 36233 10.151 0.76745 1 + 2868 21869 1605 1607 3215 3215 0.09880902671807235 AKHQWILL 8 Unmodified _AKHQWILL_ 0 0 0 REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.8549499511719 3 336.871155 1007.59164 NaN NaN NaN NaN NaN NaN NaN 9.0414 1 9.0414 8.5414 9.5414 0 0 0 0 0.21486 1 1006 1006 0.40072 0 1 + 2869 15888 1606 1608 3216 3216 0.08814360785038389 AKIDHYIVQ 9 Unmodified _AKIDHYIVQ_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7913208007812 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 128.16 1 123.34 122.84 123.84 -4.817 0 0 0 0.20628 1 24604 24604 21.747 1.293 1 2870 5053 1607 1609 3217 3217 0.04757431851612637 AKIHGKALD 9 Unmodified _AKIHGKALD_ 0 0 0 REV__EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant REV__EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.1913757324219 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 78.111 1 74.648 74.148 75.148 -3.4633 0 0 0 0.23508 1 15253 15253 4.897 0 1 + 2871 14559 1608 1610 3218 3218 0.07245180025711306 AKIHGKALD 9 Unmodified _AKIHGKALD_ 0 0 0 REV__EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant REV__EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.1825866699219 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 108.37 1 104.05 103.55 104.55 -4.32 0 0 0 0.23508 1 21352 21352 4.897 0 1 + 2872 14559 1608 1610 3219 3219 0.07245180025711306 AKIHGKALD 9 Unmodified _AKIHGKALD_ 0 0 0 REV__EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant REV__EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.2068176269531 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 70.392 1 66.925 66.425 67.425 -3.467 0 0 0 0.23508 1 13331 13331 2.4985 0 1 + 2873 14559 1608 1610 3220 3220 0.07245180025711306 AKIKARDLR 9 Unmodified _AKIKARDLR_ 0 0 0 ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000495728.1_1_9:127623696-127624209:-|nuORF ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000487431.1_1_9:127620199-127623861:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5648498535156 3 357.564614 1069.67201 -0.37636 -0.00013457 0.57865 0.00020691 0.20229 7.2333E-05 357.56473162953023 14.055 0.21389 14.055 13.965 14.179 0 8 5 2 0 0 0 0.39629 1 2075 2075 25.997 8.1342 1 694410 2874 4057 1609 1611 3221 3221 0.13996222108062284 AKIKARDLR 9 Unmodified _AKIKARDLR_ 0 0 0 ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000495728.1_1_9:127623696-127624209:-|nuORF ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000487431.1_1_9:127620199-127623861:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5640869140625 3 357.564614 1069.67201 -0.59491 -0.00021272 0.34678 0.000124 -0.24813 -8.8723E-05 357.5647876135698 15.065 0.14316 13.843 13.752 13.895 -1.2219 5 3 2 0 0 0 0.74567 1 2089 2089 4.1895 1.1172 1 315990 2875 4057 1609 1611 3222 3222 0.13996222108062284 AKIKARDLR 9 Unmodified _AKIKARDLR_ 0 0 0 ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000495728.1_1_9:127623696-127624209:-|nuORF ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000487431.1_1_9:127620199-127623861:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5645446777344 3 357.564614 1069.67201 -2.2942 -0.00082032 1.993 0.00071264 -0.30117 -0.00010769 357.5652761639243 15.021 0.13969 13.81 13.749 13.889 -1.2106 8 3 3 0 0 0 0.54933 1 2045 2045 16.566 6.2506 1 294690 2876 4057 1609 1611 3223 3223 0.13996222108062284 AKKAYGWLHE 10 Unmodified _AKKAYGWLHE_ 0 0 0 ENSG00000174145|ENST00000309447|NWD2;NWD2|p.D1262Gfs*18|1|0.39|ENSG00000174145|chr4:37445769-37445770|-/G|frameshift_variant;NWD2|p.W1259Gfs*22|4|0.26|ENSG00000174145|chr4:37445757-37445757|T/-|frameshift_variant;NWD2|p.K1317Nfs*43|1|0.35|ENSG00000174145|chr4:37445936-37445936|A/-|frameshift_variant;NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2852783203125 2 601.819473 1201.62439 NaN NaN NaN NaN NaN NaN NaN 81.475 1 81.475 80.975 81.975 0 0 0 0 0.22588 1 15867 15867 6.2058 0 1 2877 6333 1610 1612 3224 3224 0.031645231171978594 AKKGYQERD 9 Unmodified _AKKGYQERD_ 0 0 0 ENST00000439119.5_1_22:21389692-21399270:-|nuORF;nc|ENSG00000099957|O15547-2|P2RX6;ENSG00000099957|ENST00000413302|P2RX6 ENST00000439119.5_1_22:21389692-21399270:-|nuORF ENST00000439119.5_1_22:21389692-21399270:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7814331054688 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 168.71 1 163.84 163.34 164.34 -4.873 0 0 0 0.23508 1 33276 33276 7.2892 0.56607 1 2878 1913 1611 1613 3225 3225 0.008587693238041538 AKKHAMPF 8 Unmodified _AKKHAMPF_ 0 0 0 ENST00000496494.5_1_8:72111577-72234167:-|nuORF;nc|ENSG00000104313|Q99502-2|EYA1;ENSG00000104313|ENST00000340726|EYA1;nc|ENSG00000104313|Q99502-3|EYA1 ENST00000496494.5_1_8:72111577-72234167:-|nuORF ENST00000496494.5_1_8:72111577-72234167:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2534484863281 2 465.254923 928.495293 NaN NaN NaN NaN NaN NaN NaN 136.86 1 136.86 136.36 137.36 0 0 0 0 0.2343 1 27127 27127 0.62683 0 1 2879 10579 1612 1614 3226 3226 0.028184699534335778 AKKHAMPF 8 Unmodified _AKKHAMPF_ 0 0 0 ENST00000496494.5_1_8:72111577-72234167:-|nuORF;nc|ENSG00000104313|Q99502-2|EYA1;ENSG00000104313|ENST00000340726|EYA1;nc|ENSG00000104313|Q99502-3|EYA1 ENST00000496494.5_1_8:72111577-72234167:-|nuORF ENST00000496494.5_1_8:72111577-72234167:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2563781738281 2 465.254923 928.495293 NaN NaN NaN NaN NaN NaN NaN 156.22 1 156.22 155.72 156.72 0 0 0 0 0.21486 1 31337 31337 5.2307 0.47466 1 2880 10579 1612 1614 3227 3227 0.028184699534335778 AKKHAMPF 8 Unmodified _AKKHAMPF_ 0 0 0 ENST00000496494.5_1_8:72111577-72234167:-|nuORF;nc|ENSG00000104313|Q99502-2|EYA1;ENSG00000104313|ENST00000340726|EYA1;nc|ENSG00000104313|Q99502-3|EYA1 ENST00000496494.5_1_8:72111577-72234167:-|nuORF ENST00000496494.5_1_8:72111577-72234167:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25665283203125 2 465.254923 928.495293 NaN NaN NaN NaN NaN NaN NaN 162.79 1 157.64 157.14 158.14 -5.1438 0 0 0 0.21486 1 31643 31643 9.3474 3.1417 1 2881 10579 1612 1614 3228 3228 0.028184699534335778 AKKHAMPF 8 Unmodified _AKKHAMPF_ 0 0 0 ENST00000496494.5_1_8:72111577-72234167:-|nuORF;nc|ENSG00000104313|Q99502-2|EYA1;ENSG00000104313|ENST00000340726|EYA1;nc|ENSG00000104313|Q99502-3|EYA1 ENST00000496494.5_1_8:72111577-72234167:-|nuORF ENST00000496494.5_1_8:72111577-72234167:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2552185058594 2 465.254923 928.495293 NaN NaN NaN NaN NaN NaN NaN 143.27 1 138.37 137.87 138.87 -4.8982 0 0 0 0.21486 1 27655 27655 5.2307 0 1 2882 10579 1612 1614 3229 3229 0.028184699534335778 AKKKKRRRLKR 11 Unmodified _AKKKKRRRLKR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 734.5054931640625 2 734.512777 1467.011 NaN NaN NaN NaN NaN NaN NaN 173.4 1 168.61 168.11 169.11 -4.7898 0 0 0 0.23698 1 35371 35371 0.26902 0.26902 1 + 2883 22757 1613 1615 3230 3230 0.2961765946383821 AKKLHNPSLG 10 Unmodified _AKKLHNPSLG_ 0 0 0 REV__ENSG00000117707|ENST00000366958|PROX1 REV__ENSG00000117707|ENST00000366958|PROX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2750244140625 2 532.81419 1063.61383 0.41879 0.00022314 0.39002 0.00020781 0.80881 0.00043094 532.8140030202769 74.113 1.2915 70.519 70.116 71.407 -3.594 50 36 2 0 0 0 0.48849 1 14246 14246 0.26539 0 1 3557500 + 2884 15528 1614 1616 3231 3231 0.08456540462793782 AKKLVPLVIL 10 Unmodified _AKKLVPLVIL_ 0 0 0 TIE1|p.P248Lfs*117|2|0.42|ENSG00000066056|chr1:43307239-43307239|C/-|frameshift_variant TIE1|p.P248Lfs*117|2|0.42|ENSG00000066056|chr1:43307239-43307239|C/-|frameshift_variant TIE1|p.P248Lfs*117|2|0.42|ENSG00000066056|chr1:43307239-43307239|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7738647460938 2 547.389003 1092.76345 NaN NaN NaN NaN NaN NaN NaN 173.23 1 168.35 167.85 168.85 -4.881 0 0 0 0.22588 1 34426 34426 1.4819 1.0236 1 2885 25849 1615 1617 3232 3232 0.22078092752690281 AKKTKERNK 9 Unmodified _AKKTKERNK_ 0 0 0 IQCA1|p.Q369Tfs*10|1|0.17|ENSG00000132321|chr2:236419178-236419179|-/T|frameshift_variant IQCA1|p.Q369Tfs*10|1|0.17|ENSG00000132321|chr2:236419178-236419179|-/T|frameshift_variant IQCA1|p.Q369Tfs*10|1|0.17|ENSG00000132321|chr2:236419178-236419179|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 551.8390502929688 2 551.838197 1101.66184 NaN NaN NaN NaN NaN NaN NaN 165.13 1 160.34 159.84 160.84 -4.7898 0 0 0 0.19679 1 33049 33049 0.029283 0 1 2886 11950 1616 1618 3233 3233 0.11507614382821885 AKKVKDDGGCR 11 Unmodified _AKKVKDDGGCR_ 0 0 0 REV__nc|ENSG00000181885|O95471-2|CLDN7 REV__nc|ENSG00000181885|O95471-2|CLDN7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 588.8412475585938 2 588.811322 1175.60809 NaN NaN NaN NaN NaN NaN NaN 165.05 1 165.05 164.55 165.55 0 0 0 0 0.23087 1 33447 33447 7.609 0.88579 1 + 2887 18744 1617 1619 3234 3234 0.02731073888821811 AKLADSIALNY 11 Unmodified _AKLADSIALNY_ 0 0 0 SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant;ENSG00000177409|ENST00000318238|SAMD9L SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2760620117188 2 589.824421 1177.63429 0.19085 0.00011257 -0.25583 -0.00015089 -0.064979 -3.8326E-05 590.324243735934 131.24 0.35535 126.47 126.32 126.67 -4.7725 12 9 2 0 0 0 0.75285 1 25279 25279 8.1555 0.8663 1 1105600 2888 6509 1618 1620 3235 3235 0.05257666331931432 AKLALQHR 8 Unmodified _AKLALQHR_ 0 0 0 REV__ATIC|p.R172H|1|0.21|ENSG00000138363|chr2:215326122-215326122|G/A|missense_variant REV__ATIC|p.R172H|1|0.21|ENSG00000138363|chr2:215326122-215326122|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.17034912109375 3 312.862771 935.566484 0.16164 5.0572E-05 0.14663 4.5875E-05 0.30827 9.6447E-05 312.8628592092596 26.665 0.28644 25.03 24.856 25.143 -1.6347 10 7 2 0 0 0 1.0278 1 4426 4426 1.4819 1.4819 1 345670 + 2889 13148 1619 1621 3236 3236 0.09612305982466296 AKLEDLFSR 9 Unmodified _AKLEDLFSR_ 0 0 0 REV__ENST00000432615.5_1_7:158424360-158447416:-|nuORF REV__ENST00000432615.5_1_7:158424360-158447416:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 80.376 1 80.376 79.876 80.876 0 0 0 0 0.23508 1 15647 15647 7.1017 0.47135 1 + 2890 16911 1620 1622 3237 3237 0.0461712798901317 AKLFVLQKEGA 11 Unmodified _AKLFVLQKEGA_ 0 0 0 REV__ENST00000317652.1_1_20:60294383-60294794:-|nuORF REV__ENST00000317652.1_1_20:60294383-60294794:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2903442382812 2 602.358431 1202.70231 NaN NaN NaN NaN NaN NaN NaN 161.78 1 161.78 161.28 162.28 0 0 0 0 0.22548 1 32496 32496 1.4551 0 1 + 2891 20530 1621 1623 3238 3238 0.1090653598262179 AKLKKLLLVA 10 Unmodified _AKLKKLLLVA_ 0 0 0 REV__ENSG00000174444|ENST00000307961|RPL4 REV__ENSG00000174444|ENST00000307961|RPL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 548.4307861328125 2 548.894452 1095.77435 NaN NaN NaN NaN NaN NaN NaN 174.38 1 174.38 173.88 174.88 0 0 0 0 2.8426 1 36095 36095 0.69767 0.55777 1 + 2892 18415 1622 1624 3239 3239 0.23029495126979782 AKLKSILLKLI 11 Unmodified _AKLKSILLKLI_ 0 0 0 REV__ENSG00000065325|ENST00000262441|GLP2R REV__ENSG00000065325|ENST00000262441|GLP2R MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 620.101806640625 2 620.441766 1238.86898 NaN NaN NaN NaN NaN NaN NaN 167.6 1 162.71 162.21 163.21 -4.8916 0 0 0 0.22632 1 32984 32984 0.00056442 0.00056442 1 + 2893 14185 1623 1625 3240 3240 0.2591000887832706 AKLSEKKQAF 10 Unmodified _AKLSEKKQAF_ 0 0 0 nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 575.3301391601562 2 575.334956 1148.65536 NaN NaN NaN NaN NaN NaN NaN 165.67 1 160.88 160.38 161.38 -4.7898 0 0 0 2.8426 1 33202 33202 0.26539 0 1 2894 7274 1624 1626 3241 3241 0.0869767643148407 AKMHSHKP 8 Unmodified _AKMHSHKP_ 0 0 0 REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 468.2471923828125 2 468.247629 934.480705 NaN NaN NaN NaN NaN NaN NaN 169.22 1 164.34 163.84 164.84 -4.873 0 0 0 0.21486 1 33409 33409 5.2307 2.6532 1 + 2895 15577 1625 1627 3242 3242 0.010843978053003411 AKMQANIRY 9 Unmodified _AKMQANIRY_ 0 0 0 REV__ENST00000474293.2_1_6:127775237-127796815:-|nuORF REV__ENST00000474293.2_1_6:127775237-127796815:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7933959960938 2 547.792401 1093.57025 -0.023423 -1.2831E-05 3.9759 0.002178 3.9525 0.0021651 547.7955190706585 46.414 0.52112 43.548 43.232 43.753 -2.8665 15 14 2 0 0 0 0.48644 1 8456 8456 20.454 5.6154 1 923750 + 2896 19666 1626 1628 3243 3243 0.02720607694004684 AKNGATDYKLA 11 Unmodified _AKNGATDYKLA_ 0 0 0 tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1 tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1 tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3184814453125 2 576.306395 1150.59824 -0.091238 -5.2581E-05 -0.12513 -7.2112E-05 -0.21637 -0.00012469 576.3061661241752 45.978 0.92964 43.112 42.963 43.892 -2.8665 30 26 2 0 0 0 0.57511 1 8484 8484 19.362 2.249 1 1431400 2897 26036 1627 1629 3244 3244 0.02896209155096585 AKNGATDYKLA 11 Unmodified _AKNGATDYKLA_ 0 0 0 tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1 tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1 tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 576.306395 1150.59824 -0.00845 -4.8698E-06 0.012484 7.1944E-06 0.0040336 2.3246E-06 576.3063465075381 45.926 0.37686 43.085 42.934 43.311 -2.8409 -0.013524 8.7027E-05 NaN 19.362 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 824780 2898 26036 1627 1629 0.02896209155096585 AKNKQKFVLK 10 Unmodified _AKNKQKFVLK_ 0 0 0 nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1 nc|ENSG00000169679|O43683-2|BUB1 nc|ENSG00000169679|O43683-2|BUB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2734985351562 2 602.38224 1202.74993 0.56542 0.0003406 -1.3135 -0.00079124 -0.7481 -0.00045064 602.8823782397236 164.79 0.17438 159.72 159.62 159.79 -5.0648 6 4 2 0 0 0 0.90598 1 32159 32159 5.7319 2.1354 1 6369900 2899 5997 1628 1630 3245 3245 0.1566623497344608 AKNVYKEAKT 10 Unmodified _AKNVYKEAKT_ 0 0 0 REV__nc|ENSG00000124181|P19174|PLCG1 REV__nc|ENSG00000124181|P19174|PLCG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.32373046875 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 83.524 1 83.524 83.024 84.024 0 0 0 0 2.8426 1 16288 16288 0.013265 0 1 + 2900 15757 1629 1631 3246 3246 0.06533086051786086 AKPASVDVS 9 Unmodified _AKPASVDVS_ 0 0 0 REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.228271484375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 89.311 1 85.534 85.034 86.034 -3.7779 0 0 0 0.19674 1 17100 17100 1.2148 1.1416 1 + 2901 12988 1630 1632 3247 3247 0.019015056264720442 AKPRALHL 8 Unmodified _AKPRALHL_ 0 0 0 REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2 REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7487487792969 2 453.287611 904.56067 NaN NaN NaN NaN NaN NaN NaN 136.7 1 136.7 136.2 137.2 0 0 0 0 0.21486 1 27095 27095 5.2307 2.3415 1 + 2902 15000 1631 1633 3248 3248 0.10457207470790308 AKPVIKKMLN 10 Unmodified _AKPVIKKMLN_ 0 0 0 SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant;SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6 SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 571.7996215820312 2 571.359919 1140.70529 0.20824 0.00011898 -3.513 -0.0020072 -3.3047 -0.0018882 571.3597912762867 165.09 0.17873 160.11 159.97 160.15 -4.9811 5 4 2 0 0 0 1.1127 1 32227 32227 0.51642 0 1 3755500 2903 2706 1632 1634 3249 3249 0.14056087835774633 AKPYKVDP 8 Unmodified _AKPYKVDP_ 0 0 0 nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF;PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant;nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1 nc|ENSG00000197121|Q75T13-4|PGAP1 nc|ENSG00000197121|Q75T13-4|PGAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2308349609375 2 459.258185 916.501818 -0.058392 -2.6817E-05 0.21928 0.00010071 0.16089 7.389E-05 459.25811887180134 52.19 0.80151 49.138 48.795 49.596 -3.0517 41 22 3 0 0 0 0.71273 1 9581 9581 12.532 5.8084 1 1729900 2904 7331 1633 1635 3250 3250 0.0402268638579244 AKPYKVDP 8 Unmodified _AKPYKVDP_ 0 0 0 nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF;PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant;nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1 nc|ENSG00000197121|Q75T13-4|PGAP1 nc|ENSG00000197121|Q75T13-4|PGAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 459.258185 916.501818 0.48174 0.00022124 -0.52319 -0.00024028 -0.04145 -1.9036E-05 459.25774314695764 49.421 0.69755 49.421 49.09 49.788 0 0.19711 -0.00038681 NaN 12.532 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1492100 2905 7331 1633 1635 0.0402268638579244 AKPYKVDP 8 Unmodified _AKPYKVDP_ 0 0 0 nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF;PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant;nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1 nc|ENSG00000197121|Q75T13-4|PGAP1 nc|ENSG00000197121|Q75T13-4|PGAP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.258185 916.501818 -0.27403 -0.00012585 0.11914 5.4718E-05 -0.15489 -7.1133E-05 459.25826115671947 52.083 0.76125 49.2 48.831 49.592 -2.8824 -0.023954 0.00020318 NaN 12.532 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2688600 2906 7331 1633 1635 0.0402268638579244 AKPYKVDP 8 Unmodified _AKPYKVDP_ 0 0 0 nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF;PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant;nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1 nc|ENSG00000197121|Q75T13-4|PGAP1 nc|ENSG00000197121|Q75T13-4|PGAP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.258185 916.501818 -0.002476 -1.1371E-06 -0.34852 -0.00016006 -0.35099 -0.0001612 459.25795532149357 52.224 0.84349 49.137 48.845 49.689 -3.0876 -0.087393 -0.00022638 NaN 12.532 34 23 2 NaN NaN NaN NaN 0 NaN NaN 0 2337600 2907 7331 1633 1635 0.0402268638579244 AKQGGGGG 8 Unmodified _AKQGGGGG_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1500244140625 2 316.161545 630.308538 NaN NaN NaN NaN NaN NaN NaN 13.611 1 12.438 11.938 12.938 -1.173 0 0 0 0.21486 1 1782 1782 0.79363 0.19213 1 2908 1899 1634 1636 3251 3251 -0.02140430610563726 AKQILNFF 8 Unmodified _AKQILNFF_ 0 0 0 ENSG00000205765|ENST00000381647|RIMOC1 ENSG00000205765|ENST00000381647|RIMOC1 ENSG00000205765|ENST00000381647|RIMOC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2686767578125 2 490.781828 979.549102 0.18864 9.258E-05 -0.38532 -0.00018911 -0.19669 -9.6529E-05 490.78161614034696 131.42 0.38434 131.42 131.26 131.64 0 23 10 3 0 0 0 0.87247 1 25997 25997 1.7423 0 1 2764600 2909 7656 1635 1637 3252 3252 0.05850965656804874 AKQILNFF 8 Unmodified _AKQILNFF_ 0 0 0 ENSG00000205765|ENST00000381647|RIMOC1 ENSG00000205765|ENST00000381647|RIMOC1 ENSG00000205765|ENST00000381647|RIMOC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26959228515625 2 490.781828 979.549102 0.14027 6.8844E-05 -0.16071 -7.8873E-05 -0.020436 -1.003E-05 490.7818043796702 136.24 0.66422 131.34 130.96 131.62 -4.8951 29 18 2 0 0 0 0.87562 1 26134 26134 1.7423 1.0609 1 4506400 2910 7656 1635 1637 3253 3253 0.05850965656804874 AKQRRALRRWE 11 Unmodified _AKQRRALRRWE_ 0 0 0 ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1;SUV39H1|p.A198Rfs*140|1|0.39|ENSG00000101945|chrX:48700513-48700513|G/-|frameshift_variant ENSG00000101945|ENST00000376687|SUV39H1 ENSG00000101945|ENST00000376687|SUV39H1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2576904296875 3 490.623525 1468.84875 NaN NaN NaN NaN NaN NaN NaN 155.79 1 150.51 150.01 151.01 -5.2854 0 0 0 0.23698 1 30218 30218 1.0136 0.50762 1 2911 2099 1636 1638 3254 3254 0.13307650991055198 AKQSLTFVLL 10 Unmodified _AKQSLTFVLL_ 0 0 0 ENST00000512630.5_1_4:143007384-143094853:-|nuORF;ENSG00000109452|ENST00000262992|INPP4B ENST00000512630.5_1_4:143007384-143094853:-|nuORF ENST00000512630.5_1_4:143007384-143094853:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 560.3447875976562 2 560.342249 1118.66995 NaN NaN NaN NaN NaN NaN NaN 162.01 1 156.82 156.32 157.32 -5.1878 0 0 0 2.8426 1 31449 31449 0.26539 0 1 2912 2529 1637 1639 3255 3255 0.11535748579603933 AKRFAIIDP 9 Unmodified _AKRFAIIDP_ 0 0 0 REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4 REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.2271728515625 3 344.206315 1029.59712 NaN NaN NaN NaN NaN NaN NaN 123.81 1 119.24 118.74 119.74 -4.5757 0 0 0 0.23508 1 24409 24409 2.4985 0 1 + 2913 16141 1638 1640 3256 3256 0.08350039576839663 AKRKIYFLKRR 11 Unmodified _AKRKIYFLKRR_ 0 0 0 REV__ENST00000367545.7_1_6:145173639-145173798:+|nuORF REV__ENST00000367545.7_1_6:145173639-145173798:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 494.9862365722656 3 493.652533 1477.93577 0.22219 0.00010968 -0.93405 -0.0004611 -0.71187 -0.00035141 493.6520599751129 156 1.1527 151.22 150.7 151.85 -4.7791 109 32 5 0 0 0 0.65962 1 31016 31016 1.4074 1.2354 1 49481000 + 2914 20922 1639 1641 3257 3257 0.2159205721275157 AKRKIYFLKRR 11 Unmodified _AKRKIYFLKRR_ 0 0 0 REV__ENST00000367545.7_1_6:145173639-145173798:+|nuORF REV__ENST00000367545.7_1_6:145173639-145173798:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 493.652533 1477.93577 0.20335 0.00010038 -0.89017 -0.00043943 -0.68682 -0.00033905 493.65203968566556 156.67 0.99152 151.4 150.94 151.94 -5.2711 0.04118 -5.4138E-06 NaN 1.4074 96 27 5 NaN NaN NaN NaN 0 NaN NaN 0 20670000 + 2915 20922 1639 1641 0.2159205721275157 AKRKLGRHL 9 Unmodified _AKRKLGRHL_ 0 0 0 nc|ENSG00000177666|Q96AD5-2|PNPLA2;ENSG00000177666|ENST00000336615|PNPLA2 nc|ENSG00000177666|Q96AD5-2|PNPLA2 nc|ENSG00000177666|Q96AD5-2|PNPLA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015380859375 3 360.23672 1077.68833 NaN NaN NaN NaN NaN NaN NaN 117.9 1 113.39 112.89 113.89 -4.502 0 0 0 0.23508 1 23241 23241 0.96228 0 1 2916 6528 1640 1642 3258 3258 0.15259348064842015 AKRLKNCH 8 Unmodified _AKRLKNCH_ 0 0 0 RNF220|p.T137M|1|0.29|ENSG00000187147|chr1:44412507-44412507|C/T|missense_variant;ENSG00000187147|ENST00000361799|RNF220 RNF220|p.T137M|1|0.29|ENSG00000187147|chr1:44412507-44412507|C/T|missense_variant RNF220|p.T137M|1|0.29|ENSG00000187147|chr1:44412507-44412507|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 485.72613525390625 2 485.274178 968.533803 NaN NaN NaN NaN NaN NaN NaN 126.89 1 126.89 126.39 127.39 0 0 0 0 0.23664 1 25045 25045 3.2813 0 1 2917 7100 1641 1643 3259 3259 0.04827775587943961 AKRPIVVSK 9 Unmodified _AKRPIVVSK_ 0 0 0 REV__ENST00000311028.4_1_8:102731875-102928074:-|nuORF REV__ENST00000311028.4_1_8:102731875-102928074:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.9772644042969 3 333.222076 996.6444 -0.075507 -2.5161E-05 0.070891 2.3622E-05 -0.0046167 -1.5384E-06 333.22204254923247 23.052 0.24163 21.599 21.405 21.647 -1.4535 9 6 2 0 0 0 0.88425 1 3678 3678 0.96228 0.0979 1 374510 + 2918 20485 1642 1644 3260 3260 0.14594318847855448 AKRYPIRGY 9 Unmodified _AKRYPIRGY_ 0 0 0 ENST00000495550.5_1_1:197704780-197743705:-|nuORF ENST00000495550.5_1_1:197704780-197743705:-|nuORF ENST00000495550.5_1_1:197704780-197743705:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2103271484375 3 375.217214 1122.62981 NaN NaN NaN NaN NaN NaN NaN 12.825 1 11.696 11.196 12.196 -1.1293 0 0 0 0.23508 1 1609 1609 5.2969 1.1074 1 2919 10568 1643 1645 3261 3261 0.07340246699709496 AKRYPKKA 8 Unmodified _AKRYPKKA_ 0 0 0 REV__nc|ENSG00000137221|Q5JTD0-3|TJAP1 REV__nc|ENSG00000137221|Q5JTD0-3|TJAP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2541809082031 2 481.300719 960.586885 NaN NaN NaN NaN NaN NaN NaN 160.58 1 155.35 154.85 155.85 -5.2299 0 0 0 0.21486 1 31183 31183 8.5933 0 1 + 2920 16382 1644 1646 3262 3262 0.10501476642264151 AKSAGGCR 8 Unmodified _AKSAGGCR_ 0 0 0 nc|nan|Q8N6N3-3|C1orf52;ENST00000294661.8_1_1:85724720-85725334:-|nuORF;nc|nan|Q8N6N3-2|C1orf52;ENSG00000162642|ENST00000471115|C1orf52 nc|nan|Q8N6N3-3|C1orf52 nc|nan|Q8N6N3-3|C1orf52 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2189025878906 2 375.18978 748.365007 NaN NaN NaN NaN NaN NaN NaN 58.279 1 55.369 54.869 55.869 -2.9105 0 0 0 0.2396 1 11192 11192 0.30703 0 1 2921 5349 1645 1647 3263 3263 -0.01924126045560115 AKSAGGCR 8 Unmodified _AKSAGGCR_ 0 0 0 nc|nan|Q8N6N3-3|C1orf52;ENST00000294661.8_1_1:85724720-85725334:-|nuORF;nc|nan|Q8N6N3-2|C1orf52;ENSG00000162642|ENST00000471115|C1orf52 nc|nan|Q8N6N3-3|C1orf52 nc|nan|Q8N6N3-3|C1orf52 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21295166015625 2 375.18978 748.365007 NaN NaN NaN NaN NaN NaN NaN 58.708 1 55.456 54.956 55.956 -3.2517 0 0 0 0.2396 1 10913 10913 0.30703 0 1 2922 5349 1645 1647 3264 3264 -0.01924126045560115 AKSKLAIEEY 10 Unmodified _AKSKLAIEEY_ 0 0 0 REV__ENSG00000139648|ENST00000267119|KRT71 REV__ENSG00000139648|ENST00000267119|KRT71 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.326904296875 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 72.304 1 72.304 71.804 72.804 0 0 0 0 0.22588 1 14016 14016 10.824 0 1 + + 2923 13545 1646 1648 3265 3265 0.05410263957674033 AKSLDLHVP 9 Unmodified _AKSLDLHVP_ 0 0 0 nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-5|RTEL1;ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;ENST00000496281.1_1_20:62321467-62323226:+|nuORF;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1 nc|ENSG00000258366|Q9NZ71-2|RTEL1 nc|ENSG00000258366|Q9NZ71-2|RTEL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26324462890625 2 490.282192 978.549831 NaN NaN NaN NaN NaN NaN NaN 160.41 1 155.61 155.11 156.11 -4.7952 0 0 0 0.23508 1 31899 31899 11.64 3.7301 1 2924 12634 1647 1649 3266 3266 0.05969760305845284 AKSLIERY 8 Unmodified _AKSLIERY_ 0 0 0 RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1 RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2756652832031 2 490.282192 978.549831 NaN NaN NaN NaN NaN NaN NaN 81.692 1 77.853 77.353 78.353 -3.8392 0 0 0 0.20895 1 15511 15511 18.146 0 1 2925 1169 1648 1650 3267 3267 0.05969760305845284 AKSSTEPSL 9 Unmodified _AKSSTEPSL_ 0 0 0 SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant;ENSG00000111961|ENST00000367467|SASH1 SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.239013671875 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 73.863 1 70.269 69.769 70.769 -3.594 0 0 0 0.23508 1 14022 14022 10.074 0 1 2926 2660 1649 1651 3268 3268 0.0033318441828669165 AKSVFREDN 9 Unmodified _AKSVFREDN_ 0 0 0 REV__ENSG00000076924|ENST00000358368|XAB2 REV__ENSG00000076924|ENST00000358368|XAB2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2765502929688 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 145.97 1 145.97 145.47 146.47 0 0 0 0 0.19646 1 29185 29185 1.2148 1.087 1 + 2927 14353 1650 1652 3269 3269 -0.004609195675357114 AKSYFEYIILF 11 Unmodified _AKSYFEYIILF_ 0 0 0 ENST00000282120.6_1_2:85549189-85549318:-|nuORF ENST00000282120.6_1_2:85549189-85549318:-|nuORF ENST00000282120.6_1_2:85549189-85549318:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24981689453125 3 465.25159 1392.73294 NaN NaN NaN NaN NaN NaN NaN 40.582 1 38.092 37.592 38.592 -2.4896 0 0 0 0.22632 1 7269 7269 5.4027 5.3713 1 2928 8446 1651 1653 3270 3270 0.052282695769918064 AKTDMMVLW 9 Unmodified _AKTDMMVLW_ 0 0 0 REV__ENST00000356083.7_1_9:117038004-117062962:+|nuORF REV__ENST00000356083.7_1_9:117038004-117062962:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.771240234375 2 547.772288 1093.53002 NaN NaN NaN NaN NaN NaN NaN 168.68 1 163.75 163.25 164.25 -4.9295 0 0 0 0.23508 1 33265 33265 11.64 1.5664 1 + 2929 20807 1652 1654 3271 3271 -0.013000750207766032 AKTFRKAINR 10 Unmodified _AKTFRKAINR_ 0 0 0 PLS3|p.K100T|1|0.41|ENSG00000102024|chrX:115629259-115629259|A/C|missense_variant;nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3 PLS3|p.K100T|1|0.41|ENSG00000102024|chrX:115629259-115629259|A/C|missense_variant PLS3|p.K100T|1|0.41|ENSG00000102024|chrX:115629259-115629259|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 402.2851867675781 3 402.247285 1203.72002 NaN NaN NaN NaN NaN NaN NaN 95.431 1 91.381 90.881 91.881 -4.0496 0 0 0 0.22588 1 18705 18705 5.7834 0.88642 1 2930 12805 1653 1655 3272 3272 0.1263129602814388 AKTGTSQG 8 Unmodified _AKTGTSQG_ 0 0 0 ENST00000477538.1_1_3:10184451-10184685:+|nuORF ENST00000477538.1_1_3:10184451-10184685:+|nuORF ENST00000477538.1_1_3:10184451-10184685:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2119140625 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 82.502 1 78.804 78.304 79.304 -3.6985 0 0 0 0.23312 1 15734 15734 6.2058 2.9245 1 2931 10304 1654 1656 3273 3273 -0.012719096131831975 AKTRKQAA 8 Unmodified _AKTRKQAA_ 0 0 0 ENSG00000206181|ENST00000332567|ELOA2 ENSG00000206181|ENST00000332567|ELOA2 ENSG00000206181|ENST00000332567|ELOA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22760009765625 2 437.266876 872.519199 NaN NaN NaN NaN NaN NaN NaN 110.66 1 106.23 105.73 106.73 -4.4231 0 0 0 0.21486 1 21803 21803 8.5933 2.8329 1 2932 7667 1655 1657 3274 3274 0.0778402671146523 AKVKQKVPAP 10 Unmodified _AKVKQKVPAP_ 0 0 0 ENSG00000196083|ENST00000447382|IL1RAP;nc|ENSG00000196083|Q9NPH3-5|IL1RAP ENSG00000196083|ENST00000447382|IL1RAP ENSG00000196083|ENST00000447382|IL1RAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2847900390625 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 164.12 1 164.12 163.62 164.62 0 0 0 0 0.22588 1 33150 33150 9.3831 1.473 1 2933 7231 1656 1658 3275 3275 0.1408658801931324 AKVPPPVPTK 10 Unmodified _AKVPPPVPTK_ 0 0 0 nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625-2|TP53BP2 nc|ENSG00000143514|Q13625|TP53BP2 nc|ENSG00000143514|Q13625|TP53BP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.2107849121094 3 345.218332 1032.63317 NaN NaN NaN NaN NaN NaN NaN 126.68 1 122.06 121.56 122.56 -4.6172 0 0 0 0.22588 1 24979 24979 1.5923 0.52082 1 2934 4499 1657 1659 3276 3276 0.11815496753706611 AKVRPRKL 8 Unmodified _AKVRPRKL_ 0 0 0 nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENSG00000166387|ENST00000299492|PPFIBP2 nc|ENSG00000166387|Q8ND30-3|PPFIBP2 nc|ENSG00000166387|Q8ND30-3|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.2626037597656 3 323.222299 966.645068 NaN NaN NaN NaN NaN NaN NaN 17.044 1 15.529 15.029 16.029 -1.5148 0 0 0 0.21486 1 2449 2449 0.45834 0 1 2935 5717 1658 1660 3277 3277 0.16041158287544022 AKVWKKRDEL 10 Unmodified _AKVWKKRDEL_ 0 0 0 REV__STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant REV__STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2532653808594 3 424.918945 1271.73501 0.46281 0.00019666 -0.29791 -0.00012659 0.1649 7.007E-05 424.91873646557605 78.113 0.76955 78.113 77.773 78.542 0 38 21 2 0 0 0 0.72179 1 15208 15208 8.9762 1.4992 1 2346400 + 2936 24750 1659 1661 3278 3278 0.11000743105455513 AKYANIHDY 9 Unmodified _AKYANIHDY_ 0 0 0 tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1 tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1 tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7783203125 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 146.41 1 141.72 141.22 142.22 -4.6868 0 0 0 0.23508 1 29035 29035 11.64 0.81637 1 2937 26227 1660 1662 3279 3279 -0.023760180791896346 AKYCFYYQ 8 Unmodified _AKYCFYYQ_ 0 0 0 REV__ENSG00000169410|ENST00000618819|PTPN9 REV__ENSG00000169410|ENST00000618819|PTPN9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78173828125 2 543.241678 1084.4688 0.31286 0.00016996 -0.95651 -0.00051962 -0.64365 -0.00034966 543.2414657316988 86.066 0.85126 86.066 85.394 86.245 0 32 23 2 0 0 0 0.97173 1 16687 16687 12.532 6.7711 1 1434800 + 2938 18101 1661 1663 3280 3280 -0.07005263728569844 ALAAALAHI 9 Unmodified _ALAAALAHI_ 0 0 0 ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50 ENSG00000165732|ENST00000354185|DDX21 ENSG00000165732|ENST00000354185|DDX21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2372741699219 2 425.760895 849.507237 -0.026138 -1.1129E-05 0.19721 8.3965E-05 0.17107 7.2836E-05 425.76090311167343 125.74 0.63811 121.14 120.76 121.4 -4.5984 22 17 2 0 0 0 0.27479 1 24808 24808 45.75 9.2838 1 1834700 2939 5658 1662 1664 3281 3281 0.0764640996825392 ALAAALAHI 9 Unmodified _ALAAALAHI_ 0 0 0 ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50 ENSG00000165732|ENST00000354185|DDX21 ENSG00000165732|ENST00000354185|DDX21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2354736328125 2 425.760895 849.507237 0.26492 0.00011279 -0.13873 -5.9064E-05 0.12619 5.3728E-05 425.7608127802731 125.92 0.55708 121.15 120.94 121.49 -4.7681 22 15 2 0 0 0 0.27479 1 24202 24202 45.75 9.2838 1 1621000 2940 5658 1662 1664 3282 3282 0.0764640996825392 ALAAALAHI 9 Unmodified _ALAAALAHI_ 0 0 0 ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50 ENSG00000165732|ENST00000354185|DDX21 ENSG00000165732|ENST00000354185|DDX21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2524719238281 2 425.760895 849.507237 -0.066353 -2.8251E-05 0.26142 0.0001113 0.19506 8.305E-05 425.76093737042737 125.96 0.6011 121.32 120.95 121.55 -4.6495 23 16 2 0 0 0 0.44106 1 24168 24168 28.173 0 1 1738500 2941 5658 1662 1664 3283 3283 0.0764640996825392 ALAAFSVAVI 10 Unmodified _ALAAFSVAVI_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2533874511719 2 481.289485 960.564418 NaN NaN NaN NaN NaN NaN NaN 122.68 1 118.14 117.64 118.64 -4.5476 0 0 0 0.17827 1 24186 24186 32.305 1.6689 1 + 2942 14902 1663 1665 3284 3284 0.08255832453994572 ALAAQLEAS 9 Unmodified _ALAAQLEAS_ 0 0 0 REV__ENST00000562981.1_1_16:88718935-88719839:-|nuORF REV__ENST00000562981.1_1_16:88718935-88719839:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2356872558594 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.035 1 59.778 59.278 60.278 -3.2567 0 0 0 0.23508 1 11825 11825 7.9102 1.187 1 + 2943 17931 1664 1666 3285 3285 0.019015056264720442 ALAAYQEIT 9 Unmodified _ALAAYQEIT_ 0 0 0 REV__ENSG00000053918|ENST00000155840|KCNQ1 REV__ENSG00000053918|ENST00000155840|KCNQ1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2684631347656 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 133.06 1 128.26 127.76 128.76 -4.799 0 0 0 0.21848 1 25608 25608 18.135 1.1927 1 + 2944 14100 1665 1667 3286 3286 0.012100613149868877 ALADGVVSQA 10 Unmodified _ALADGVVSQA_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 930.490966796875 1 930.489087 929.481811 0.20575 0.00019145 -0.37122 -0.00034541 -0.16546 -0.00015396 930.4886369829595 66.118 0.38052 66.118 65.93 66.31 0 18 10 2 0 0 0 0.016148 2 12747 12747;12797 100.09 33.634 1 5204500 2945 1403 1666 1668 3287;3288 3287 0.014248906551870277 ALADGVVSQA 10 Unmodified _ALADGVVSQA_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.48974609375 1 930.489087 929.481811 0.063692 5.9265E-05 0.060716 5.6496E-05 0.12441 0.00011576 930.4890588564796 69.256 0.50021 66.077 65.868 66.368 -3.1796 22 13 2 0 0 0 0.019277 2 13444 13444;13493 90.135 38.583 1 5444900 2946 1403 1666 1668 3289;3290 3289 0.014248906551870277 ALADGVVSQA 10 Unmodified _ALADGVVSQA_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 930.4892578125 1 930.489087 929.481811 0.60496 0.00056291 0.0085011 7.9102E-06 0.61346 0.00057082 930.4887756265261 69.816 0.54982 66.236 65.933 66.483 -3.5798 26 15 2 0 0 0 2.7432E-07 2 13159 13110;13159 148.27 72.507 1 4943800 2947 1403 1666 1668 3291;3292 3292 0.014248906551870277 ALADGVVSQA 10 Unmodified _ALADGVVSQA_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24188232421875 2 465.748182 929.481811 0.33208 0.00015466 -0.093339 -4.3472E-05 0.23874 0.00011119 465.74796031060214 69.832 0.51974 66.252 65.862 66.381 -3.5798 34 14 3 0 0 0 0.59264 1 13168 13168 22.736 13.76 1 3101800 2948 1403 1666 1668 3293 3293 0.014248906551870277 ALADGVVSQA 10 Unmodified _ALADGVVSQA_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 930.4907836914062 1 930.489087 929.481811 0.47839 0.00044514 -0.23457 -0.00021826 0.24382 0.00022687 930.4887835545064 69.65 0.5602 66.26 65.981 66.541 -3.3903 27 15 2 0 0 0 0.0067116 1 13142 13142 107.56 51.386 1 3834500 2949 1403 1666 1668 3294 3294 0.014248906551870277 ALADGVVSQA 10 Unmodified _ALADGVVSQA_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24200439453125 2 465.748182 929.481811 0.34186 0.00015922 -0.19157 -8.9226E-05 0.15028 6.9993E-05 465.7480709997172 69.724 0.55951 66.334 65.912 66.471 -3.3903 29 15 2 0 0 0 0.70987 1 13207 13207 24.021 0 1 3038900 2950 1403 1666 1668 3295 3295 0.014248906551870277 ALADGVVSQA 10 Unmodified _ALADGVVSQA_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.748182 929.481811 -0.20661 -9.6227E-05 0.31842 0.0001483 0.11181 5.2075E-05 465.748235247008 66.108 0.44846 66.108 65.862 66.31 0 -0.082597 0.00020964 NaN 22.736 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4150900 2951 1403 1666 1668 0.014248906551870277 ALADLQEAV 9 Unmodified _ALADLQEAV_ 0 0 0 nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF nc|ENSG00000115183|Q9C0D5-2|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2503967285156 2 465.250557 928.486562 0.030932 1.4391E-05 -0.25923 -0.00012061 -0.2283 -0.00010622 465.25037921702847 113.48 0.69688 108.95 108.61 109.31 -4.5259 43 19 3 0 0 0 0.042631 1 21773 21773 74.423 0 1 3810400 2952 2826 1667 1669 3296 3296 0.019457747979458873 ALADLQEAV 9 Unmodified _ALADLQEAV_ 0 0 0 nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF nc|ENSG00000115183|Q9C0D5-2|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 930.4946899414062 1 929.493838 928.486562 0.70497 0.00065526 -0.52918 -0.00049187 0.17579 0.00016339 929.4933417348984 113.22 0.52811 108.95 108.67 109.2 -4.2725 19 14 2 0 0 0 0.35443 1 21799 21799 28.487 4.4663 1 1287400 2953 2826 1667 1669 3297 3297 0.019457747979458873 ALADLQEAV 9 Unmodified _ALADLQEAV_ 0 0 0 nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF nc|ENSG00000115183|Q9C0D5-2|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2503662109375 2 465.250557 928.486562 0.56813 0.00026432 -0.83651 -0.00038919 -0.26838 -0.00012486 465.2500566223146 113.24 0.8054 108.96 108.6 109.41 -4.2725 44 22 3 0 0 0 0.081765 1 21819 21819 61.357 2.6787 1 3547700 2954 2826 1667 1669 3298 3298 0.019457747979458873 ALADNLLRV 9 Unmodified _ALADNLLRV_ 0 0 0 ENSG00000015413|ENST00000690203|DPEP1 ENSG00000015413|ENST00000690203|DPEP1 ENSG00000015413|ENST00000690203|DPEP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 492.2861328125 2 492.795466 983.57638 0.12687 6.2523E-05 0.3174 0.00015641 0.44427 0.00021894 492.795579249324 140.75 0.68353 136.1 135.65 136.33 -4.6493 32 18 2 0 0 0 0.1428 1 27813 27813 67.838 31.332 1 3355400 2955 1110 1668 1670 3299 3299 0.08393449197183145 ALADNLLRV 9 Unmodified _ALADNLLRV_ 0 0 0 ENSG00000015413|ENST00000690203|DPEP1 ENSG00000015413|ENST00000690203|DPEP1 ENSG00000015413|ENST00000690203|DPEP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 492.795466 983.57638 0.1129 5.5637E-05 0.26544 0.00013081 0.37834 0.00018644 492.79560746215463 141.1 0.7052 136.12 135.75 136.45 -4.9877 -0.012737 -4.7817E-06 NaN 67.838 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2913200 2956 1110 1668 1670 0.08393449197183145 ALADNLLRV 9 Unmodified _ALADNLLRV_ 0 0 0 ENSG00000015413|ENST00000690203|DPEP1 ENSG00000015413|ENST00000690203|DPEP1 ENSG00000015413|ENST00000690203|DPEP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 492.795466 983.57638 0.053102 2.6168E-05 0.21374 0.00010533 0.26685 0.0001315 492.7956231195568 141.03 0.48672 136.17 135.94 136.43 -4.8678 0.03649 -5.5733E-05 NaN 67.838 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3722900 2957 1110 1668 1670 0.08393449197183145 ALAEEYEH 8 Unmodified _ALAEEYEH_ 0 0 0 nc|ENSG00000142185|O94759-2|TRPM2;ENSG00000142185|ENST00000397928|TRPM2;TRPM2|p.A785Rfs*17|1|0.49|ENSG00000142185|chr21:44401707-44401707|C/-|frameshift_variant;nc|ENSG00000142185|O94759-3|TRPM2 nc|ENSG00000142185|O94759-2|TRPM2 nc|ENSG00000142185|O94759-2|TRPM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2535095214844 2 481.216714 960.418876 -0.14949 -7.1936E-05 4.3231 0.0020804 4.1736 0.0020084 481.22041489432337 104.4 0.68543 100.18 99.89 100.58 -4.2183 46 19 4 0 0 0 0.3584 1 20526 20526 34.187 6.5585 1 3065800 2958 4408 1669 1671 3300 3300 -0.0629167513285438 ALAEEYEH 8 Unmodified _ALAEEYEH_ 0 0 0 nc|ENSG00000142185|O94759-2|TRPM2;ENSG00000142185|ENST00000397928|TRPM2;TRPM2|p.A785Rfs*17|1|0.49|ENSG00000142185|chr21:44401707-44401707|C/-|frameshift_variant;nc|ENSG00000142185|O94759-3|TRPM2 nc|ENSG00000142185|O94759-2|TRPM2 nc|ENSG00000142185|O94759-2|TRPM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2534484863281 2 481.216714 960.418876 0.65272 0.0003141 3.6827 0.0017722 4.3354 0.0020863 481.2199888445904 104.43 0.77892 100.37 99.983 100.76 -4.0543 60 21 4 0 0 0 0.3584 2 20104 20104;20117 34.187 8.788 1 4790200 2959 4408 1669 1671 3301;3302 3301 -0.0629167513285438 ALAEKEHKL 9 Unmodified _ALAEKEHKL_ 0 0 0 nc|ENSG00000141425|Q96P16-3|RPRD1A;ENSG00000141425|ENST00000399022|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.2114562988281 3 346.869591 1037.58694 -0.32389 -0.00011235 1.078 0.00037394 0.75414 0.00026159 346.86968493831813 18.472 0.51972 17.161 16.831 17.351 -1.3109 33 14 4 0 0 0 0.10537 1 2984 2984 30.703 18.463 1 3390800 2960 4360 1670 1672 3303 3303 0.06965431851608628 ALAEKEHKL 9 Unmodified _ALAEKEHKL_ 0 0 0 nc|ENSG00000141425|Q96P16-3|RPRD1A;ENSG00000141425|ENST00000399022|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 347.18194580078125 3 346.869591 1037.58694 -0.3778 -0.00013105 0.86811 0.00030112 0.49031 0.00017007 346.86964726785243 18.409 0.51016 17.137 16.764 17.275 -1.2722 21 14 2 0 0 0 0.27464 1 2748 2748 59.368 38.915 1 3040100 2961 4360 1670 1672 3304 3304 0.06965431851608628 ALAEQVQKA 9 Unmodified _ALAEQVQKA_ 0 0 0 ENSG00000164008|ENST00000372525|C1orf50 ENSG00000164008|ENST00000372525|C1orf50 ENSG00000164008|ENST00000372525|C1orf50 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72442626953125 2 479.271824 956.529095 -0.018873 -9.0451E-06 -0.79803 -0.00038247 -0.8169 -0.00039152 479.2715757665117 29.511 0.31786 29.511 29.398 29.716 0 12 8 2 0 0 0 0.71527 1 5289 5289 13.906 3.8321 1 470460 2962 5495 1671 1673 3305 3305 0.049091699261907706 ALAEQVQKA 9 Unmodified _ALAEQVQKA_ 0 0 0 ENSG00000164008|ENST00000372525|C1orf50 ENSG00000164008|ENST00000372525|C1orf50 ENSG00000164008|ENST00000372525|C1orf50 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74212646484375 2 479.271824 956.529095 0.29423 0.00014102 -0.58624 -0.00028097 -0.29201 -0.00013995 479.27170511847424 31.464 0.35722 29.437 29.232 29.589 -2.0264 15 9 2 0 0 0 0.23744 1 5424 5424 43.858 0 1 711610 2963 5495 1671 1673 3306 3306 0.049091699261907706 ALAFFLGLAP 10 Unmodified _ALAFFLGLAP_ 0 0 0 ENST00000222718.6_1_7:27142143-27142227:-|nuORF ENST00000222718.6_1_7:27142143-27142227:-|nuORF ENST00000222718.6_1_7:27142143-27142227:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.533447265625 3 340.535661 1018.58515 NaN NaN NaN NaN NaN NaN NaN 33.76 1 33.76 33.26 34.26 0 0 0 0 2.8426 1 6169 6169 1.0651 0 1 2964 8137 1672 1674 3307 3307 0.07660422833646408 ALAGPLAPT 9 Unmodified _ALAGPLAPT_ 0 0 0 REV__ENST00000498209.6_1_11:2937879-2942743:+|nuORF REV__ENST00000498209.6_1_11:2937879-2942743:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3746337890625 1 810.47198 809.464704 0.86629 0.0007021 -0.34696 -0.0002812 0.51933 0.0004209 810.4716208280291 102.81 1.2039 102.81 102.3 103.51 0 95 34 4 0 0 0 0.14832 1 20115 20115 44.407 2.3125 1 61969000 + 2965 22411 1673 1675 3308 3308 0.05235014840025087 ALAHPPYF 8 Unmodified _ALAHPPYF_ 0 0 0 ENST00000229854.11_1_6:52129078-52129231:-|nuORF ENST00000229854.11_1_6:52129078-52129231:-|nuORF ENST00000229854.11_1_6:52129078-52129231:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23822021484375 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 122.79 1 118.22 117.72 118.72 -4.5649 0 0 0 0.21022 1 24208 24208 17.087 5.4463 1 2966 8155 1674 1676 3309 3309 0.004384345598964501 ALAIKIMKK 9 Unmodified _ALAIKIMKK_ 0 0 0 SLFN14|p.E608K|1|0.36|ENSG00000236320|chr17:35552812-35552812|C/T|missense_variant SLFN14|p.E608K|1|0.36|ENSG00000236320|chr17:35552812-35552812|C/T|missense_variant SLFN14|p.E608K|1|0.36|ENSG00000236320|chr17:35552812-35552812|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.2162780761719 3 339.228062 1014.66236 NaN NaN NaN NaN NaN NaN NaN 93.719 1 89.729 89.229 90.229 -3.9907 0 0 0 0.23508 1 18360 18360 0.26902 0 1 2967 25694 1675 1677 3310 3310 0.1556131777832661 ALAKHLIKI 9 Unmodified _ALAKHLIKI_ 0 0 0 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.9044189453125 3 336.230572 1005.66989 -0.20863 -7.0148E-05 0.248 8.3384E-05 0.039366 1.3236E-05 336.2305456622016 62.873 0.91984 59.911 59.571 60.491 -2.9614 69 26 4 0 0 0 0.039965 1 12175 12175 52.268 35.155 1 8237100 2968 2211 1676 1678 3311 3311 0.16727793370273503 ALAKHLIKI 9 Unmodified _ALAKHLIKI_ 0 0 0 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 336.230572 1005.66989 0.17121 5.7567E-05 -0.081253 -2.732E-05 0.089959 3.0247E-05 336.2304235582098 63.405 0.84951 59.989 59.644 60.494 -3.4158 0.02729 -0.00028356 NaN 52.268 69 23 4 NaN NaN NaN NaN 0 NaN NaN 0 8168000 2969 2211 1676 1678 0.16727793370273503 ALAKHLIKI 9 Unmodified _ALAKHLIKI_ 0 0 0 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 336.230572 1005.66989 -0.43779 -0.0001472 0.4541 0.00015268 0.016306 5.4825E-06 336.2306490053488 63.241 0.78778 59.984 59.61 60.398 -3.2567 0.022842 0.00025645 NaN 52.268 67 22 4 NaN NaN NaN NaN 0 NaN NaN 0 7917100 2970 2211 1676 1678 0.16727793370273503 ALAKKPHII 9 Unmodified _ALAKKPHII_ 0 0 0 ENST00000544032.5_1_12:12974590-12974668:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47 ENST00000544032.5_1_12:12974590-12974668:+|nuORF ENST00000544032.5_1_12:12974590-12974668:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 330.9978942871094 3 330.886805 989.638586 -0.67869 -0.00022457 1.0561 0.00034947 0.37746 0.0001249 330.8871014104124 36.073 0.38622 33.679 33.451 33.837 -2.3938 14 10 2 0 0 0 0.87836 1 6647 6647 1.1933 0 1 710360 2971 7704 1677 1679 3312 3312 0.14335220336170096 ALAKPPVVSV 10 Unmodified _ALAKPPVVSV_ 0 0 0 nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 nc|ENSG00000183495|Q96L91-3|EP400 nc|ENSG00000183495|Q96L91-3|EP400 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2587585449219 2 490.810585 979.606617 0.1397 6.8564E-05 0.10958 5.3784E-05 0.24928 0.00012235 490.81060035551 98.333 0.90601 94.2 93.739 94.645 -4.1326 44 25 2 0 0 0 0.80147 1 19362 19362 10.8 7.203 1 1598900 2972 12505 1678 1680 3313 3313 0.1159980786237611 ALAKPPVVSV 10 Unmodified _ALAKPPVVSV_ 0 0 0 nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 nc|ENSG00000183495|Q96L91-3|EP400 nc|ENSG00000183495|Q96L91-3|EP400 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25848388671875 2 490.810585 979.606617 0.2806 0.00013772 -0.025132 -1.2335E-05 0.25547 0.00012539 490.810523098575 98.658 0.9781 94.389 93.813 94.791 -4.2692 48 27 2 0 0 0 0.68509 1 18852 18852 15.248 9.0427 1 1253800 2973 12505 1678 1680 3314 3314 0.1159980786237611 ALAKPPVVSV 10 Unmodified _ALAKPPVVSV_ 0 0 0 nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 nc|ENSG00000183495|Q96L91-3|EP400 nc|ENSG00000183495|Q96L91-3|EP400 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2643737792969 2 490.810585 979.606617 -0.13374 -6.5642E-05 0.73075 0.00035866 0.59701 0.00029302 490.81093898243927 98.29 0.94505 94.334 93.854 94.799 -3.9564 48 27 2 0 0 0 0.68509 1 18861 18861 15.248 9.0427 1 1016200 2974 12505 1678 1680 3315 3315 0.1159980786237611 ALALFNSNL 9 Unmodified _ALALFNSNL_ 0 0 0 REV__nc|ENSG00000175166|Q13200-2|PSMD2 REV__nc|ENSG00000175166|Q13200-2|PSMD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7673034667969 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 133.01 1 133.01 132.51 133.51 0 0 0 0 0.22621 1 26305 26305 15.847 0 1 + 2975 18458 1679 1681 3316 3316 0.04098071414500737 ALANHLIKV 9 Unmodified _ALANHLIKV_ 0 0 0 ENSG00000013016|ENST00000322054|EHD3;EHD3|p.L512P|1|0.33|ENSG00000013016|chr2:31266631-31266631|T/C|missense_variant;ENST00000484846.1_1_11:64621807-64623066:-|nuORF;ENSG00000110047|ENST00000320631|EHD1 ENSG00000013016|ENST00000322054|EHD3 ENSG00000013016|ENST00000322054|EHD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2642822265625 2 489.808377 977.6022 0.60423 0.00029596 -0.68479 -0.00033542 -0.080559 -3.9459E-05 489.80799674686983 79.961 0.66231 79.961 79.722 80.384 0 35 18 2 0 0 0 0.045272 1 15597 15597 85.272 17.191 1 3252200 2976 1090 1680 1682 3317 3317 0.11250343439473909 ALANHLIKV 9 Unmodified _ALANHLIKV_ 0 0 0 ENSG00000013016|ENST00000322054|EHD3;EHD3|p.L512P|1|0.33|ENSG00000013016|chr2:31266631-31266631|T/C|missense_variant;ENST00000484846.1_1_11:64621807-64623066:-|nuORF;ENSG00000110047|ENST00000320631|EHD1 ENSG00000013016|ENST00000322054|EHD3 ENSG00000013016|ENST00000322054|EHD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27423095703125 2 489.808377 977.6022 0.10623 5.2034E-05 -0.36681 -0.00017967 -0.26058 -0.00012763 489.8081370936916 82.976 0.59636 79.368 79.059 79.656 -3.6079 35 16 3 0 0 0 0.096847 1 16177 16177 71.134 9.7761 1 2729300 2977 1090 1680 1682 3318 3318 0.11250343439473909 ALANHLIKV 9 Unmodified _ALANHLIKV_ 0 0 0 ENSG00000013016|ENST00000322054|EHD3;EHD3|p.L512P|1|0.33|ENSG00000013016|chr2:31266631-31266631|T/C|missense_variant;ENST00000484846.1_1_11:64621807-64623066:-|nuORF;ENSG00000110047|ENST00000320631|EHD1 ENSG00000013016|ENST00000322054|EHD3 ENSG00000013016|ENST00000322054|EHD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2658386230469 2 489.808377 977.6022 0.21402 0.00010483 0.095067 4.6565E-05 0.30909 0.0001514 489.8080079316229 83.331 0.56149 79.457 79.152 79.714 -3.8736 28 15 3 0 0 0 0.27464 1 15850 15850 30.703 15.865 1 1920800 2978 1090 1680 1682 3319 3319 0.11250343439473909 ALANHLIKV 9 Unmodified _ALANHLIKV_ 0 0 0 ENSG00000013016|ENST00000322054|EHD3;EHD3|p.L512P|1|0.33|ENSG00000013016|chr2:31266631-31266631|T/C|missense_variant;ENST00000484846.1_1_11:64621807-64623066:-|nuORF;ENSG00000110047|ENST00000320631|EHD1 ENSG00000013016|ENST00000322054|EHD3 ENSG00000013016|ENST00000322054|EHD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.263916015625 2 489.808377 977.6022 -0.33397 -0.00016358 -0.17887 -8.7614E-05 -0.51284 -0.00025119 489.80818469794855 83.169 0.58257 79.471 79.178 79.76 -3.6985 35 16 3 0 0 0 0.02872 1 15849 15849 115.69 19.407 1 2624800 2979 1090 1680 1682 3320 3320 0.11250343439473909 ALAPGLPTA 9 Unmodified _ALAPGLPTA_ 0 0 0 ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF;ENSG00000117691|ENST00000366988|NENF ENST00000472389.1_1_1:212606336-212608058:+|nuORF ENST00000472389.1_1_1:212606336-212608058:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3895263671875 1 810.47198 809.464704 0.88681 0.00071874 -0.32165 -0.00026069 0.56516 0.00045804 810.471583555335 107.03 1.2378 102.89 102.35 103.59 -4.135 103 35 4 0 0 0 0.029739 1 20548 20548 81.864 28.288 1 70315000 2980 3000 1681 1683 3321 3321 0.05235014840036456 ALAPGLPTA 9 Unmodified _ALAPGLPTA_ 0 0 0 ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF;ENSG00000117691|ENST00000366988|NENF ENST00000472389.1_1_1:212606336-212608058:+|nuORF ENST00000472389.1_1_1:212606336-212608058:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 810.47198 809.464704 0.86629 0.0007021 -0.34696 -0.0002812 0.51933 0.0004209 810.4716208280291 102.81 1.2039 102.81 102.3 103.51 0 -0.053355 -0.00030144 NaN 81.864 95 34 4 NaN NaN NaN NaN 0 NaN NaN 0 61969000 2981 3000 1681 1683 0.05235014840036456 ALAPGLPTA 9 Unmodified _ALAPGLPTA_ 0 0 0 ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF;ENSG00000117691|ENST00000366988|NENF ENST00000472389.1_1_1:212606336-212608058:+|nuORF ENST00000472389.1_1_1:212606336-212608058:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 810.47198 809.464704 0.043758 3.5464E-05 0.42608 0.00034533 0.46984 0.00038079 810.4722241488762 107.18 1.2535 102.86 102.3 103.55 -4.32 -0.0076008 0.00032509 NaN 81.864 101 35 4 NaN NaN NaN NaN 0 NaN NaN 0 64722000 2982 3000 1681 1683 0.05235014840036456 ALAPGLPTA 9 Unmodified _ALAPGLPTA_ 0 0 0 ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF;ENSG00000117691|ENST00000366988|NENF ENST00000472389.1_1_1:212606336-212608058:+|nuORF ENST00000472389.1_1_1:212606336-212608058:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 810.47198 809.464704 0.19682 0.00015952 0.36083 0.00029244 0.55765 0.00045196 810.4721805544156 107.31 1.4182 102.9 102.37 103.79 -4.4121 0.032568 0.0002722 NaN 81.864 117 40 4 NaN NaN NaN NaN 0 NaN NaN 0 65552000 2983 3000 1681 1683 0.05235014840036456 ALAPHLDDA 9 Unmodified _ALAPHLDDA_ 0 0 0 ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5429992675781 2 461.735074 921.455596 0.23022 0.0001063 0.071216 3.2883E-05 0.30144 0.00013918 461.7351137692645 62.748 0.96645 59.508 59.073 60.039 -3.2395 58 27 3 0 0 0 0.10297 1 11804 11804 54.774 10.367 1 5677400 2984 5567 1682 1684 3322 3322 -0.008273785163055436 ALAPHLDDA 9 Unmodified _ALAPHLDDA_ 0 0 0 ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.735074 921.455596 -0.10891 -5.0288E-05 0.46176 0.00021321 0.35285 0.00016292 461.735270927589 59.63 0.81705 59.63 59.284 60.102 0 0.11485 0.00018041 NaN 54.774 40 22 3 NaN NaN NaN NaN 0 NaN NaN 0 7265400 2985 5567 1682 1684 -0.008273785163055436 ALAPHLDDA 9 Unmodified _ALAPHLDDA_ 0 0 0 ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.735074 921.455596 0.10567 4.879E-05 0.17934 8.2806E-05 0.285 0.0001316 461.73513499954964 62.891 0.88682 59.476 59.122 60.009 -3.4158 -0.039277 -8.0402E-05 NaN 54.774 49 24 3 NaN NaN NaN NaN 0 NaN NaN 0 5951100 2986 5567 1682 1684 -0.008273785163055436 ALAQRDQEL 9 Unmodified _ALAQRDQEL_ 0 0 0 nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2734375 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 92.808 1 88.664 88.164 89.164 -4.1435 0 0 0 0.23508 1 17684 17684 12.532 1.7076 1 2987 3411 1683 1685 3323 3323 0.021153669495106442 ALARMSRNF 9 Unmodified _ALARMSRNF_ 0 0 0 REV__nc|ENSG00000166169|Q9UGP5-2|POLL REV__nc|ENSG00000166169|Q9UGP5-2|POLL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2861938476562 2 533.284743 1064.55493 NaN NaN NaN NaN NaN NaN NaN 75.55 1 75.55 75.05 76.05 0 0 0 0 0.21065 1 14675 14675 20.454 5.2051 1 + 2988 24148 1684 1686 3324 3324 0.025237408968223463 ALARRCSLALS 11 Unmodified _ALARRCSLALS_ 0 0 0 ENST00000454631.1_1_1:231660190-231664218:-|nuORF ENST00000454631.1_1_1:231660190-231664218:-|nuORF ENST00000454631.1_1_1:231660190-231664218:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7138977050781 3 387.55713 1159.64956 NaN NaN NaN NaN NaN NaN NaN 15.36 1 14.007 13.507 14.507 -1.3534 0 0 0 0.23159 1 2110 2110 7.0371 1.6344 1 2989 10015 1685 1687 3325 3325 0.0761225464814288 ALASEPLKV 9 Unmodified _ALASEPLKV_ 0 0 0 nc|ENSG00000164830|Q8N573-7|OXR1;nc|ENSG00000164830|Q8N573-4|OXR1;nc|ENSG00000164830|Q8N573-6|OXR1;nc|ENSG00000164830|Q8N573-2|OXR1;nc|ENSG00000164830|Q8N573-5|OXR1;ENSG00000164830|ENST00000517566|OXR1;nc|ENSG00000164830|Q8N573|OXR1;ENST00000521864.1_1_8:107752648-107754575:+|nuORF nc|ENSG00000164830|Q8N573-7|OXR1 nc|ENSG00000164830|Q8N573-7|OXR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2568359375 2 464.279118 926.543683 -0.1429 -6.6344E-05 0.016876 7.8352E-06 -0.12602 -5.8509E-05 464.27906138896276 87.824 0.65495 84.031 83.721 84.376 -3.7926 44 17 3 0 0 0 0.5059 1 17165 17165 19.257 2.1441 1 9189900 2990 5570 1686 1688 3326 3326 0.07747242074333371 ALASEPLKV 9 Unmodified _ALASEPLKV_ 0 0 0 nc|ENSG00000164830|Q8N573-7|OXR1;nc|ENSG00000164830|Q8N573-4|OXR1;nc|ENSG00000164830|Q8N573-6|OXR1;nc|ENSG00000164830|Q8N573-2|OXR1;nc|ENSG00000164830|Q8N573-5|OXR1;ENSG00000164830|ENST00000517566|OXR1;nc|ENSG00000164830|Q8N573|OXR1;ENST00000521864.1_1_8:107752648-107754575:+|nuORF nc|ENSG00000164830|Q8N573-7|OXR1 nc|ENSG00000164830|Q8N573-7|OXR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.279118 926.543683 0.3087 0.00014332 -0.53169 -0.00024685 -0.22299 -0.00010353 464.2788098779179 88.135 0.62994 84.139 83.799 84.429 -3.9953 0.04673 -0.00022761 NaN 19.257 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 8299400 2991 5570 1686 1688 0.07747242074333371 ALASEPLKV 9 Unmodified _ALASEPLKV_ 0 0 0 nc|ENSG00000164830|Q8N573-7|OXR1;nc|ENSG00000164830|Q8N573-4|OXR1;nc|ENSG00000164830|Q8N573-6|OXR1;nc|ENSG00000164830|Q8N573-2|OXR1;nc|ENSG00000164830|Q8N573-5|OXR1;ENSG00000164830|ENST00000517566|OXR1;nc|ENSG00000164830|Q8N573|OXR1;ENST00000521864.1_1_8:107752648-107754575:+|nuORF nc|ENSG00000164830|Q8N573-7|OXR1 nc|ENSG00000164830|Q8N573-7|OXR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.279118 926.543683 0.1675 7.7769E-05 -0.41069 -0.00019067 -0.24318 -0.0001129 464.27888091641927 87.857 0.70302 84.107 83.728 84.431 -3.7501 0.014497 -0.00011525 NaN 19.257 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6994700 2992 5570 1686 1688 0.07747242074333371 ALASHISLLLL 11 Unmodified _ALASHISLLLL_ 0 0 0 REV__ENST00000463694.1_1_3:58193943-58196633:-|nuORF REV__ENST00000463694.1_1_3:58193943-58196633:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3313598632812 2 575.863349 1149.71214 0.32284 0.00018591 -3.5461 -0.0020421 -3.2232 -0.0018561 576.3649591446698 145.88 0.21054 140.88 140.74 140.95 -5 6 5 2 0 0 0 0.78079 1 28212 28212 6.2058 0.97511 1 1000400 + 2993 17600 1687 1689 3327 3327 0.14327723988003527 ALASKAPVLS 10 Unmodified _ALASKAPVLS_ 0 0 0 ENST00000568170.1_1_16:66544905-66545152:-|nuORF ENST00000568170.1_1_16:66544905-66545152:-|nuORF ENST00000568170.1_1_16:66544905-66545152:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73193359375 2 478.792392 955.570232 0.020378 9.7568E-06 -2.0055 -0.00096022 -1.9851 -0.00095046 478.7923129364118 94.319 0.75908 90.475 90.228 90.987 -3.844 37 21 3 0 0 0 0.52179 1 18130 18130 32.786 0 1 2247600 2994 11392 1688 1690 3328 3328 0.09066930965661868 ALASSQGDGLY 11 Unmodified _ALASSQGDGLY_ 0 0 0 ENSG00000189233|ENST00000413272|NUGGC ENSG00000189233|ENST00000413272|NUGGC ENSG00000189233|ENST00000413272|NUGGC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2620239257812 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 65.802 1 62.755 62.255 63.255 -3.047 0 0 0 0.22943 1 12740 12740 8.7454 1.6437 1 2995 7220 1689 1691 3329 3329 -0.028280455242793323 ALASVIKEL 9 Unmodified _ALASVIKEL_ 0 0 0 ENSG00000122970|ENST00000242591|IFT81 ENSG00000122970|ENST00000242591|IFT81 ENSG00000122970|ENST00000242591|IFT81 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 472.7876281738281 2 472.294768 942.574983 -0.0060724 -2.868E-06 0.11934 5.6362E-05 0.11326 5.3494E-05 472.2947426896679 139.21 0.80615 134.57 134.16 134.96 -4.6439 40 22 2 0 0 0 0.058839 1 27510 27510 67.838 23.856 1 5978900 2996 3248 1690 1692 3330 3330 0.10139815108436778 ALASVIKEL 9 Unmodified _ALASVIKEL_ 0 0 0 ENSG00000122970|ENST00000242591|IFT81 ENSG00000122970|ENST00000242591|IFT81 ENSG00000122970|ENST00000242591|IFT81 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 472.294768 942.574983 0.032212 1.5214E-05 0.13186 6.2277E-05 0.16407 7.749E-05 472.2947442001511 139.73 0.81042 134.77 134.27 135.09 -4.952 0.056377 0.00011654 NaN 67.838 38 22 2 NaN NaN NaN NaN 0 NaN NaN 0 3856800 2997 3248 1690 1692 0.10139815108436778 ALASVIKEL 9 Unmodified _ALASVIKEL_ 0 0 0 ENSG00000122970|ENST00000242591|IFT81 ENSG00000122970|ENST00000242591|IFT81 ENSG00000122970|ENST00000242591|IFT81 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 472.294768 942.574983 0.26441 0.00012488 -0.2323 -0.00010972 0.032103 1.5162E-05 472.29463592950736 139.66 0.73657 134.81 134.39 135.12 -4.8492 0.093715 -0.00022745 NaN 67.838 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3930000 2998 3248 1690 1692 0.10139815108436778 ALASVTFFA 9 Unmodified _ALASVTFFA_ 0 0 0 ENST00000553238.5_1_12:113745708-113770716:-|nuORF;nc|ENSG00000089060|Q6J4K2-2|SLC8B1;ENSG00000089060|ENST00000680972|SLC8B1 ENST00000553238.5_1_12:113745708-113770716:-|nuORF ENST00000553238.5_1_12:113745708-113770716:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2577819824219 2 463.752736 925.490919 0.17979 8.3378E-05 -0.12563 -5.8263E-05 0.054157 2.5116E-05 463.7525689878615 89.886 1.5406 86.108 85.313 86.854 -3.7779 138 43 4 0 0 0 0.41781 1 17267 17267 24.674 5.2349 1 29379000 2999 1748 1691 1693 3331 3331 0.025192840115209947 ALATFVAR 8 Unmodified _ALATFVAR_ 0 0 0 ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11 ENST00000498228.1_1_1:55014277-55063089:+|nuORF ENST00000498228.1_1_1:55014277-55063089:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2543029785156 2 424.75307 847.491587 -0.22889 -9.7223E-05 0.60561 0.00025723 0.37671 0.00016001 424.75326523086045 48.062 0.47026 45.193 44.983 45.453 -2.869 20 12 2 0 0 0 0.53444 1 9088 9088 26.341 9.399 1 720200 3000 5327 1692 1694 3332 3332 0.06174123451228297 ALATFVAR 8 Unmodified _ALATFVAR_ 0 0 0 ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11 ENST00000498228.1_1_1:55014277-55063089:+|nuORF ENST00000498228.1_1_1:55014277-55063089:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2556457519531 2 424.75307 847.491587 -0.018337 -7.7885E-06 0.67359 0.00028611 0.65525 0.00027832 424.75325022631523 48.128 0.45321 45.186 45.006 45.459 -2.9421 17 12 2 0 0 0 0.40661 1 8778 8778 32.117 3.6301 1 949210 3001 5327 1692 1694 3333 3333 0.06174123451228297 ALCGPSLGR 9 Unmodified _ALCGPSLGR_ 0 0 0 REV__ENST00000528752.1_1_11:66241221-66243635:+|nuORF REV__ENST00000528752.1_1_11:66241221-66243635:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2351989746094 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 148.15 1 143.44 142.94 143.94 -4.7095 0 0 0 0.22251 1 29415 29415 16.942 2.104 1 + 3002 22729 1693 1695 3334 3334 0.012492891941064954 ALCPHSPDAAL 11 Unmodified _ALCPHSPDAAL_ 0 0 0 REV__ENST00000378756.7_1_1:1469482-1469635:+|nuORF REV__ENST00000378756.7_1_1:1469482-1469635:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7691040039062 2 547.768591 1093.52263 0.61568 0.00033725 1.1537 0.00063194 1.7693 0.00096919 547.7692848191391 44.575 0.70038 44.575 44.323 45.023 0 21 19 2 0 0 0 0.45631 1 8365 8365 25.399 1.3787 1 1612300 + 3003 21122 1694 1696 3335 3335 -0.02039091296865081 ALCPQVINA 9 Unmodified _ALCPQVINA_ 0 0 0 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2506408691406 2 464.74967 927.484787 0.20006 9.2977E-05 -1.2793 -0.00059458 -1.0793 -0.0005016 464.74909649574556 110.19 0.61624 110.19 109.82 110.43 0 25 17 2 0 0 0 0.25702 2 21686 21639;21686 34.102 17.16 1 1955300 3004 742 1695 1697 3336;3337 3337 0.018144425083505666 ALCPQVINA 9 Unmodified _ALCPQVINA_ 0 0 0 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2512512207031 2 464.74967 927.484787 -0.11177 -5.1946E-05 -0.43366 -0.00020154 -0.54543 -0.00025349 464.74949706583493 114.5 0.67267 110.03 109.79 110.46 -4.4726 32 18 2 0 0 0 0.10919 2 22584 22584;22628 42.095 22.656 1 2074600 3005 742 1695 1697 3338;3339 3338 0.018144425083505666 ALCPQVINA 9 Unmodified _ALCPQVINA_ 0 0 0 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2506408691406 2 464.74967 927.484787 0.53674 0.00024945 -0.91295 -0.00042429 -0.37621 -0.00017484 464.7494056473529 114.61 0.5632 110.29 109.95 110.52 -4.3136 26 15 2 0 0 0 0.23715 1 22063 22063 14.957 11.37 1 1496600 3006 742 1695 1697 3340 3340 0.018144425083505666 ALCPQVINA 9 Unmodified _ALCPQVINA_ 0 0 0 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.74967 927.484787 0.53674 0.00024945 -0.91295 -0.00042429 -0.37621 -0.00017484 464.7494056473529 114.61 0.5632 110.29 109.95 110.52 -4.3136 0.10534 -0.00013046 NaN 42.095 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1496600 3007 742 1695 1697 0.018144425083505666 ALCRQLSE 8 Unmodified _ALCRQLSE_ 0 0 0 ENSG00000108091|ENST00000263102|CCDC6;ENST00000518638.1_1_10:61566663-61572468:-|nuORF ENSG00000108091|ENST00000263102|CCDC6 ENSG00000108091|ENST00000263102|CCDC6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2392578125 2 460.236927 918.459301 0.1083 4.9842E-05 0.37227 0.00017133 0.48056 0.00022117 460.2370065836579 32.181 0.60288 29.951 29.691 30.294 -2.2305 29 16 3 0 0 0 8448 1 5919 5919 1.3295 0 1 2087400 3008 2458 1696 1698 3341 3341 -0.003190320140674885 ALCVLFASR 9 Unmodified _ALCVLFASR_ 0 0 0 REV__ENST00000491877.1_1_X:149984920-150067073:-|nuORF REV__ENST00000491877.1_1_X:149984920-150067073:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2715759277344 2 490.273312 978.532072 NaN NaN NaN NaN NaN NaN NaN 116.65 1 116.65 116.15 117.15 0 0 0 0 0.22621 1 22973 22973 15.847 0 1 + 3009 14825 1697 1699 3342 3342 0.04194721779356314 ALDAGAVYTLA 11 Unmodified _ALDAGAVYTLA_ 0 0 0 nc|ENSG00000144908|O75891-2|ALDH1L1;ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1 nc|ENSG00000144908|O75891-2|ALDH1L1 nc|ENSG00000144908|O75891-2|ALDH1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2863159179688 2 532.784764 1063.55498 0.35748 0.00019046 0.11796 6.2848E-05 0.47544 0.00025331 532.7847892067903 41.092 0.41681 38.552 38.313 38.73 -2.5398 24 11 3 0 0 0 0.50871 1 7353 7353 22.736 0 1 1604600 3010 4584 1698 1700 3343 3343 0.025740193778119647 ALDAGNIKL 9 Unmodified _ALDAGNIKL_ 0 0 0 nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B nc|ENSG00000110844|Q6NWY9-2|PRPF40B nc|ENSG00000110844|Q6NWY9-2|PRPF40B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2382507324219 2 457.768917 913.523281 0.63962 0.0002928 -0.35104 -0.00016069 0.28859 0.00013211 457.76865437703293 103.1 0.61327 103.1 102.8 103.41 0 37 17 3 0 0 0 0.14998 1 20275 20275 51.63 13.656 1 3567000 3011 2590 1699 1701 3344 3344 0.06306071414508096 ALDAGNIKL 9 Unmodified _ALDAGNIKL_ 0 0 0 nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B nc|ENSG00000110844|Q6NWY9-2|PRPF40B nc|ENSG00000110844|Q6NWY9-2|PRPF40B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2245788574219 2 457.768917 913.523281 -0.50099 -0.00022934 0.59156 0.0002708 0.090568 4.1459E-05 457.7691422259433 106.93 0.73384 102.66 102.32 103.05 -4.2638 44 20 3 0 0 0 0.11402 1 21063 21063 51.63 17.527 1 6095400 3012 2590 1699 1701 3345 3345 0.06306071414508096 ALDAGNIKL 9 Unmodified _ALDAGNIKL_ 0 0 0 nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B nc|ENSG00000110844|Q6NWY9-2|PRPF40B nc|ENSG00000110844|Q6NWY9-2|PRPF40B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2221374511719 2 457.768917 913.523281 -0.071927 -3.2926E-05 0.30048 0.00013755 0.22855 0.00010463 457.76898283840643 107.12 0.6559 102.71 102.37 103.02 -4.4121 42 18 3 0 0 0 0.11402 1 20560 20560 51.63 5.6089 1 4874500 3013 2590 1699 1701 3346 3346 0.06306071414508096 ALDANIARL 9 Unmodified _ALDANIARL_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7215576171875 2 478.779816 955.545079 -0.44161 -0.00021143 0.78228 0.00037454 0.34067 0.00016311 478.78009067315844 109.23 0.56339 104.85 104.61 105.17 -4.3776 29 15 3 0 0 0 0.029716 1 21523 21523 81.89 29.622 1 1761500 3014 6411 1700 1702 3347 3347 0.0655287616308442 ALDANIARL 9 Unmodified _ALDANIARL_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7215270996094 2 478.779816 955.545079 -0.17965 -8.6012E-05 0.033133 1.5864E-05 -0.14651 -7.0148E-05 478.77977670470915 109.41 0.59192 104.96 104.6 105.2 -4.4518 27 16 2 0 0 0 0.029747 1 20983 20983 89.401 43.701 1 2555900 3015 6411 1700 1702 3348 3348 0.0655287616308442 ALDANIARL 9 Unmodified _ALDANIARL_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72174072265625 2 478.779816 955.545079 0.65625 0.0003142 -0.61213 -0.00029308 0.044118 2.1123E-05 478.77944700738027 109.21 0.5986 105.02 104.63 105.23 -4.1826 27 16 2 0 0 0 0.16619 1 20969 20969 41.84 13.353 1 1890500 3016 6411 1700 1702 3349 3349 0.0655287616308442 ALDASILNV 9 Unmodified _ALDASILNV_ 0 0 0 RGS12|p.M230T|1|0.38|ENSG00000159788|chr4:3316859-3316859|T/C|missense_variant;RGS12|p.A229V|1|0.45|ENSG00000159788|chr4:3316856-3316856|C/T|missense_variant;ENST00000502947.1_1_4:3317897-3344786:+|nuORF;RGS12|p.K869Sfs*2|1|0.44|ENSG00000159788|chr4:3417086-3417086|A/-|frameshift_variant;RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant;nc|ENSG00000159788|O14924-5|RGS12;RGS12|p.K1178Nfs*32|1|0.71|ENSG00000159788|chr4:3428672-3428672|A/-|frameshift_variant;RGS12|p.Q1292Rfs*49|1|0.23|ENSG00000159788|chr4:3430704-3430704|C/-|frameshift_variant;nc|ENSG00000159788|O14924-4|RGS12;RGS12|p.Q1363Rfs*30|1|0.3|ENSG00000159788|chr4:3430923-3430923|C/-|frameshift_variant;ENSG00000159788|ENST00000336727|RGS12 RGS12|p.M230T|1|0.38|ENSG00000159788|chr4:3316859-3316859|T/C|missense_variant RGS12|p.M230T|1|0.38|ENSG00000159788|chr4:3316859-3316859|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23907470703125 2 458.260925 914.507297 0.38892 0.00017823 -0.051852 -2.3762E-05 0.33707 0.00015446 458.2607751045283 154.67 0.5778 149.42 149.18 149.76 -5.2526 23 15 2 0 0 0 0.12183 1 29958 29958 48.346 8.3885 1 1553200 3017 5217 1701 1703 3350 3350 0.04662365177614447 ALDCPIRQ 8 Unmodified _ALDCPIRQ_ 0 0 0 REV__ZMAT3|p.R234C|1|0.3|ENSG00000172667|chr3:179025187-179025187|G/A|missense_variant REV__ZMAT3|p.R234C|1|0.3|ENSG00000172667|chr3:179025187-179025187|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.239013671875 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 113.25 1 108.97 108.47 109.47 -4.2725 0 0 0 0.21486 1 21808 21808 9.3474 0 1 + 3018 25564 1702 1704 3351 3351 0.003732718485252917 ALDDDFDF 8 Unmodified _ALDDDFDF_ 0 0 0 ENSG00000135521|ENST00000367576|LTV1;LTV1|p.T382Qfs*23|1|0.08|ENSG00000135521|chr6:143863110-143863110|A/-|frameshift_variant ENSG00000135521|ENST00000367576|LTV1 ENSG00000135521|ENST00000367576|LTV1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72442626953125 2 479.195448 956.376342 -0.02293 -1.0988E-05 1.1246 0.00053889 1.1017 0.00052791 479.1958237407448 44.931 0.78268 42.085 41.721 42.504 -2.8456 50 21 3 0 0 0 0.56049 1 8117 8117 24.674 6.5389 1 3988300 3019 3932 1703 1705 3352 3352 -0.10359070261097258 ALDDISESI 9 Unmodified _ALDDISESI_ 0 0 0 ENST00000543131.5_1_11:114310234-114320694:+|nuORF;ENST00000544507.1_1_11:114319952-114320694:+|nuORF;ENST00000539788.5_1_11:114314891-114320694:+|nuORF;ENST00000538791.3_1_11:114315223-114320694:+|nuORF;ENST00000538403.5_1_11:114314877-114320694:+|nuORF;nc|ENSG00000076043|Q9Y3B8-2|REXO2;nc|ENSG00000076043|Q9Y3B8-3|REXO2;REXO2|p.I219Nfs*3|1|0.39|ENSG00000076043|chr11:114449909-114449910|-/A|frameshift_variant;ENSG00000076043|ENST00000265881|REXO2 ENST00000543131.5_1_11:114310234-114320694:+|nuORF ENST00000543131.5_1_11:114310234-114320694:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76904296875 2 481.73748 961.460406 NaN NaN NaN NaN NaN NaN NaN 116.13 1 111.77 111.27 112.27 -4.3585 0 0 0 0.20628 1 22358 22358 21.747 0 1 3020 11099 1704 1706 3353 3353 -0.021865391641881615 ALDDQCFDSCK 11 Unmodified _ALDDQCFDSCK_ 0 0 0 REV__ENST00000465046.1_1_17:18148865-18148985:-|nuORF REV__ENST00000465046.1_1_17:18148865-18148985:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7731323242188 2 622.749738 1243.48492 NaN NaN NaN NaN NaN NaN NaN 156.94 1 151.67 151.17 152.17 -5.2712 0 0 0 0.22632 1 30446 30446 0.026206 0.024825 1 + 3021 18577 1705 1707 3354 3354 -0.1270797034462703 ALDEEEQM 8 Unmodified _ALDEEEQM_ 0 0 0 REV__ENSG00000163930|ENST00000460680|BAP1 REV__ENSG00000163930|ENST00000460680|BAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 482.2608947753906 2 482.70004 963.385527 -0.09845 -4.7522E-05 0.91877 0.00044349 0.82032 0.00039597 482.70042263461073 103.92 0.99167 99.699 99.343 100.33 -4.2183 81 28 4 0 0 0 0.89147 1 20563 20563 0.62683 0.56284 1 18301000 + 3022 17629 1706 1708 3355 3355 -0.09763044967064616 ALDEEEQM 8 Unmodified _ALDEEEQM_ 0 0 0 REV__ENSG00000163930|ENST00000460680|BAP1 REV__ENSG00000163930|ENST00000460680|BAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 482.70004 963.385527 0.30712 0.00014825 0.56488 0.00027267 0.87201 0.00042092 482.70023892149715 99.719 1.0745 99.719 99.267 100.34 0 -0.016172 -6.1394E-05 NaN 0.62683 95 30 4 NaN NaN NaN NaN 0 NaN NaN 0 26468000 + 3023 17629 1706 1708 -0.09763044967064616 ALDEEEQM 8 Unmodified _ALDEEEQM_ 0 0 0 REV__ENSG00000163930|ENST00000460680|BAP1 REV__ENSG00000163930|ENST00000460680|BAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 482.70004 963.385527 0.23728 0.00011454 0.75199 0.00036298 0.98927 0.00047752 482.7003382997359 104.1 1.5852 99.757 99.283 100.87 -4.346 0.02226 0.00011924 NaN 0.62683 112 45 4 NaN NaN NaN NaN 0 NaN NaN 0 35037000 + 3024 17629 1706 1708 -0.09763044967064616 ALDEEEQM 8 Unmodified _ALDEEEQM_ 0 0 0 REV__ENSG00000163930|ENST00000460680|BAP1 REV__ENSG00000163930|ENST00000460680|BAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.70004 963.385527 0.56327 0.00027189 0.27956 0.00013494 0.84283 0.00040684 482.7001320446521 103.82 1.2725 99.765 99.347 100.62 -4.0543 0.029915 -0.00033685 NaN 0.62683 95 35 4 NaN NaN NaN NaN 0 NaN NaN 0 33880000 + 3025 17629 1706 1708 -0.09763044967064616 ALDEILKKL 9 Unmodified _ALDEILKKL_ 0 0 0 tr|U7SNU9|U7SNU9_FUSNUAdenylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=adkPE=3SV=1 tr|U7SNU9|U7SNU9_FUSNUAdenylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=adkPE=3SV=1 tr|U7SNU9|U7SNU9_FUSNUAdenylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=adkPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.257080078125 2 521.828975 1041.6434 0.21027 0.00010972 -2.4681 -0.001288 -2.2579 -0.0011782 521.828607831979 149.08 0.10138 149.08 149.03 149.13 0 4 2 2 0 0 0 0.86532 1 29837 29837 4.756 3.1034 1 1244200 3026 26034 1707 1709 3356 3356 0.12424059688282796 ALDGAVLSLC 10 Unmodified _ALDGAVLSLC_ 0 0 0 REV__KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant REV__KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25408935546875 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 150.49 1 145.29 144.79 145.79 -5.1994 0 0 0 0.22588 1 29165 29165 7.2892 1.5288 1 + 3027 18897 1708 1710 3357 3357 0.013190054429287557 ALDGLLQQV 9 Unmodified _ALDGLLQQV_ 0 0 0 ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7347106933594 2 478.7742 955.533846 0.40312 0.000193 -0.27302 -0.00013072 0.1301 6.2287E-05 478.7740026416822 156.25 0.70801 150.98 150.59 151.3 -5.2712 32 19 2 0 0 0 0.033441 1 30300 30300 60.47 23.66 1 2077500 3028 2329 1709 1711 3358 3358 0.0543005406894963 ALDGLLQQV 9 Unmodified _ALDGLLQQV_ 0 0 0 ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.7742 955.533846 0.15986 7.6535E-05 0.060394 2.8915E-05 0.22025 0.00010545 478.77418019081495 156.22 0.62245 150.94 150.69 151.31 -5.2854 0.018876 0.00010735 NaN 60.47 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2163300 3029 2329 1709 1711 0.0543005406894963 ALDHGFTI 8 Unmodified _ALDHGFTI_ 0 0 0 nc|ENSG00000133083|O15075-3|DCLK1;nc|ENSG00000133083|O15075-2|DCLK1 nc|ENSG00000133083|O15075-3|DCLK1 nc|ENSG00000133083|O15075-3|DCLK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2280578613281 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 170.44 1 165.57 165.07 166.07 -4.873 0 0 0 0.21486 1 33728 33728 9.3474 3.587 1 3030 12329 1710 1712 3359 3359 -0.0021045968237558554 ALDKALTSV 9 Unmodified _ALDKALTSV_ 0 0 0 CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant;ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2 CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2337951660156 2 459.26875 916.522947 0.5117 0.00023501 1.755 0.00080601 2.2667 0.001041 459.26973747287263 76.771 1.259 76.771 76.273 77.532 0 93 35 4 0 0 0 0.091132 2 14909 14909;14952 67.187 44.567 1 15726000 3031 757 1711 1713 3360;3361 3360 0.06134651694662807 ALDKALTSV 9 Unmodified _ALDKALTSV_ 0 0 0 CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant;ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2 CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2266540527344 2 459.26875 916.522947 -0.16069 -7.3802E-05 0.86491 0.00039722 0.70421 0.00032342 459.2689099815115 80.179 1.2499 76.503 76.043 77.293 -3.676 86 35 4 0 0 0 0.24263 1 15329 15329 34.932 2.1464 1 18130000 3032 757 1711 1713 3362 3362 0.06134651694662807 ALDKALTSV 9 Unmodified _ALDKALTSV_ 0 0 0 CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant;ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2 CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.26875 916.522947 -0.058529 -2.6881E-05 0.771 0.0003541 0.71247 0.00032722 459.268859756936 79.924 1.2708 76.414 75.979 77.249 -3.5102 -0.11806 -5.875E-05 NaN 45.74 83 35 4 NaN NaN NaN NaN 0 NaN NaN 0 18910000 3033 757 1711 1713 0.06134651694662807 ALDKALTSV 9 Unmodified _ALDKALTSV_ 0 0 0 CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant;ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2 CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.26875 916.522947 -0.083118 -3.8174E-05 0.71045 0.00032629 0.62733 0.00028811 459.2688703201059 80.278 1.2977 76.439 76.035 77.332 -3.8392 -0.092787 -0.00011437 NaN 45.74 78 36 4 NaN NaN NaN NaN 0 NaN NaN 0 14936000 3034 757 1711 1713 0.06134651694662807 ALDLGGTNF 9 Unmodified _ALDLGGTNF_ 0 0 0 ENST00000494253.1_1_10:71098016-71144300:+|nuORF;nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;HK3|p.R549H|1|0.45|ENSG00000160883|chr5:176887292-176887292|C/T|missense_variant;ENST00000447818.2_1_X:79828255-79829731:-|nuORF;ENSG00000159399|ENST00000290573|HK2;ENST00000472302.1_1_2:75081464-75094914:+|nuORF;HK3|p.E758Gfs*38|1|0.37|ENSG00000160883|chr5:176881812-176881813|-/C|frameshift_variant;ENSG00000160883|ENST00000292432|HK3;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000156510|ENST00000354624|HKDC1 ENST00000494253.1_1_10:71098016-71144300:+|nuORF;ENSG00000159399|ENST00000290573|HK2;HK3|p.E758Gfs*38|1|0.37|ENSG00000160883|chr5:176881812-176881813|-/C|frameshift_variant;nc|ENSG00000156510|Q2TB90-3|HKDC1 ENSG00000159399|ENST00000290573|HK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.76068115234375 2 454.229625 906.444697 NaN NaN NaN NaN NaN NaN NaN 127.45 1 127.45 126.95 127.95 0 0 0 0 0.19687 1 25155 25155 8.1555 4.5685 1 3035 5206;5272;12392;5092 1712 1714 3363 3363 -0.012267808905676247 ALDLGGTNF 9 Unmodified _ALDLGGTNF_ 0 0 0 ENST00000494253.1_1_10:71098016-71144300:+|nuORF;nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;HK3|p.R549H|1|0.45|ENSG00000160883|chr5:176887292-176887292|C/T|missense_variant;ENST00000447818.2_1_X:79828255-79829731:-|nuORF;ENSG00000159399|ENST00000290573|HK2;ENST00000472302.1_1_2:75081464-75094914:+|nuORF;HK3|p.E758Gfs*38|1|0.37|ENSG00000160883|chr5:176881812-176881813|-/C|frameshift_variant;ENSG00000160883|ENST00000292432|HK3;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000156510|ENST00000354624|HKDC1 ENST00000494253.1_1_10:71098016-71144300:+|nuORF;ENSG00000159399|ENST00000290573|HK2;HK3|p.E758Gfs*38|1|0.37|ENSG00000160883|chr5:176881812-176881813|-/C|frameshift_variant;nc|ENSG00000156510|Q2TB90-3|HKDC1 ENSG00000159399|ENST00000290573|HK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 454.2428894042969 2 454.229625 906.444697 -0.12218 -5.5498E-05 0.42949 0.00019509 0.30731 0.00013959 454.2297576909529 131.89 0.5267 127.25 126.96 127.48 -4.6399 20 14 2 0 0 0 0.2213 1 26028 26028 14.987 11.399 1 1171200 3036 5206;5272;12392;5092 1712 1714 3364 3364 -0.012267808905676247 ALDNSHPIEV 10 Unmodified _ALDNSHPIEV_ 0 0 0 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7769775390625 2 547.77747 1093.54039 0.33983 0.00018615 -0.31923 -0.00017487 0.020605 1.1287E-05 547.7772394981447 73.277 1.195 73.277 72.539 73.734 0 70 33 4 0 0 0 0.080529 2 14119 14105;14119 67.838 24.066 1 10309000 3037 4352;10996 1713 1715 3365;3366 3366 -0.0026405277033063612 ALDNSHPIEV 10 Unmodified _ALDNSHPIEV_ 0 0 0 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7775268554688 2 547.77747 1093.54039 0.14415 7.8963E-05 -0.24455 -0.00013396 -0.1004 -5.4994E-05 547.7773533619945 75.83 0.67717 72.415 72.189 72.866 -3.4151 24 18 2 0 0 0 0.07727 2 14789 14789;14845 69.338 25.48 1 1694300 3038 4352;10996 1713 1715 3367;3368 3367 -0.0026405277033063612 ALDNSHPIEV 10 Unmodified _ALDNSHPIEV_ 0 0 0 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.777099609375 2 547.77747 1093.54039 0.11181 6.1245E-05 0.51342 0.00028124 0.62523 0.00034249 547.7776428551562 76.362 0.57518 72.64 72.38 72.955 -3.7227 23 16 2 0 0 0 0.15248 3 14476 14427;14447;14476 47.732 20.103 1 1551400 3039 4352;10996 1713 1715 3369;3370;3371 3371 -0.0026405277033063612 ALDNSHPIEV 10 Unmodified _ALDNSHPIEV_ 0 0 0 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.777587890625 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 76.084 1 72.45 71.95 72.95 -3.6337 0 0 0 0.17973 1 14476 14476 32.037 1.4009 1 3040 4352;10996 1713 1715 3372 3372 -0.0026405277033063612 ALDPAAQAFL 10 Unmodified _ALDPAAQAFL_ 0 0 0 ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.9770202636719 2 508.7742 1015.53385 0.20602 0.00010482 0.00083627 4.2547E-07 0.20686 0.00010524 508.7739766706985 151.14 0.532 151.14 150.85 151.38 0 24 14 2 0 0 0 0.83242 1 30298 30298 20.454 9.6297 1 1904700 3041 5172 1714 1716 3373 3373 0.02670054068948957 ALDPAAQAFL 10 Unmodified _ALDPAAQAFL_ 0 0 0 ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 508.7742 1015.53385 0.055826 2.8403E-05 0.14662 7.4596E-05 0.20245 0.000103 508.77423816454046 156.07 0.77032 151.29 150.94 151.71 -4.7791 0.027874 0.00019884 NaN 20.454 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2356200 3042 5172 1714 1716 0.02670054068948957 ALDPAAQAFL 10 Unmodified _ALDPAAQAFL_ 0 0 0 ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 508.7742 1015.53385 0.34344 0.00017474 -0.32445 -0.00016507 0.01899 9.6617E-06 508.77408014508575 156.63 0.8884 151.36 150.94 151.83 -5.2712 0.099628 -0.0002805 NaN 20.454 41 24 3 NaN NaN NaN NaN 0 NaN NaN 0 2383800 3043 5172 1714 1716 0.02670054068948957 ALDPGTRDSY 10 Unmodified _ALDPGTRDSY_ 0 0 0 ENSG00000119403|ENST00000373896|PHF19;nc|ENSG00000119403|Q5T6S3-3|PHF19;nc|ENSG00000119403|Q5T6S3-2|PHF19 ENSG00000119403|ENST00000373896|PHF19 ENSG00000119403|ENST00000373896|PHF19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7742309570312 2 547.759278 1093.504 0.44881 0.00024584 1.4407 0.00078915 1.8895 0.001035 547.7601959228097 39.005 0.34724 39.005 38.818 39.166 0 21 9 3 0 0 0 0.50195 1 7242 7242 34.932 15.675 1 3229300 3044 3076 1715 1717 3374 3374 -0.03900929667042874 ALDPPPEALR 10 Unmodified _ALDPPPEALR_ 0 0 0 REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 97.032 1 92.934 92.434 93.434 -4.0978 0 0 0 0.22557 1 19036 19036 17.443 0.87677 1 + 3045 13642 1716 1718 3375 3375 0.046171279889904326 ALDPPPEALR 10 Unmodified _ALDPPPEALR_ 0 0 0 REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2377014160156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 97.213 1 92.978 92.478 93.478 -4.2348 0 0 0 0.22557 1 18567 18567 17.443 2.6044 1 + 3046 13642 1716 1718 3376 3376 0.046171279889904326 ALDPPPEALR 10 Unmodified _ALDPPPEALR_ 0 0 0 REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013854980469 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 96.947 1 93.028 92.528 93.528 -3.9194 0 0 0 0.22557 1 18606 18606 17.443 0.87677 1 + 3047 13642 1716 1718 3377 3377 0.046171279889904326 ALDSHILDY 9 Unmodified _ALDSHILDY_ 0 0 0 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69091796875 2 523.761289 1045.50803 0.16796 8.7971E-05 -0.26509 -0.00013885 -0.097134 -5.0875E-05 523.761294823594 113.64 1.2316 113.64 113.14 114.37 0 122 34 6 0 0 0 1.0871E-17 1 22350 22350 172.91 101.77 1 64012000 3048 3827 1717 1719 3378 3378 -0.012908401733284336 ALDSHILDY 9 Unmodified _ALDSHILDY_ 0 0 0 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6907348632812 2 523.761289 1045.50803 0.038798 2.0321E-05 -0.079501 -4.164E-05 -0.040703 -2.1319E-05 523.7612049642178 118.07 0.97441 113.56 113.07 114.04 -4.502 87 27 4 0 0 0 1.3328E-06 3 23237 23233;23237;23326 141.83 76.592 1 78834000 3049 3827 1717 1719 3379;3380;3381 3380 -0.012908401733284336 ALDSHILDY 9 Unmodified _ALDSHILDY_ 0 0 0 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6924438476562 2 523.761289 1045.50803 -0.092392 -4.8392E-05 0.16495 8.6396E-05 0.072561 3.8005E-05 523.761338533635 118.14 1.0482 113.53 113.06 114.11 -4.6106 100 28 5 0 0 0 0.0038269 1 22712 22712 128.37 73.592 1 71584000 3050 3827 1717 1719 3382 3382 -0.012908401733284336 ALDSHILDY 9 Unmodified _ALDSHILDY_ 0 0 0 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6945190429688 2 523.761289 1045.50803 0.48959 0.00025643 -0.37879 -0.0001984 0.1108 5.8032E-05 523.7610015497451 117.95 1.2109 113.54 113 114.21 -4.4088 111 33 5 0 0 0 1.0871E-17 3 22707 22643;22707;22759 172.91 101.77 1 66496000 3051 3827 1717 1719 3383;3384;3385 3384 -0.012908401733284336 ALDSTNVEA 9 Unmodified _ALDSTNVEA_ 0 0 0 ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2490539550781 2 460.221997 918.429441 0.43503 0.00020021 -0.45268 -0.00020833 -0.01765 -8.1231E-06 460.2217314975726 42.078 1.4686 42.078 41.618 43.087 0 112 41 4 0 0 0 0.07121 1 7885 7885 78.149 10.069 1 31850000 3052 2206 1718 1720 3386 3386 -0.03303692478425546 ALDSTNVEA 9 Unmodified _ALDSTNVEA_ 0 0 0 ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23553466796875 2 460.221997 918.429441 -0.10564 -4.8617E-05 0.15482 7.1252E-05 0.049182 2.2635E-05 460.22202815991744 44.864 1.0644 42.074 41.605 42.67 -2.79 93 29 4 0 0 0 0.19271 1 8370 8370 46.021 16.939 1 66426000 3053 2206 1718 1720 3387 3387 -0.03303692478425546 ALDSTNVEA 9 Unmodified _ALDSTNVEA_ 0 0 0 ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2315368652344 2 460.221997 918.429441 -0.074206 -3.4151E-05 0.1704 7.8421E-05 0.096193 4.427E-05 460.2220385553759 44.973 1.7767 42.108 41.395 43.172 -2.8653 127 50 4 0 0 0 0.0083817 2 8114 8114;8236 108 33.068 1 55933000 3054 2206 1718 1720 3388;3389 3388 -0.03303692478425546 ALDSTNVEL 9 Unmodified _ALDSTNVEL_ 0 0 0 ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25 ENST00000487325.5_1_1:156038076-156039544:+|nuORF ENST00000487325.5_1_1:156038076-156039544:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2454833984375 2 481.245472 960.476391 -0.10135 -4.8773E-05 0.060523 2.9127E-05 -0.040824 -1.9647E-05 481.2454865115772 95.925 1.4896 95.925 95.456 96.945 0 129 42 5 0 0 0 0.00058444 6 18796 18719;18743;18796;18797;18842;18889 122.78 77.777 1 164850000 3055 3756 1719 1721 3390;3391;3392;3393;3394;3395 3392 -0.005428329272717747 ALDSTNVEL 9 Unmodified _ALDSTNVEL_ 0 0 0 ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25 ENST00000487325.5_1_1:156038076-156039544:+|nuORF ENST00000487325.5_1_1:156038076-156039544:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7676696777344 2 481.245472 960.476391 0.065745 3.1639E-05 -0.18938 -9.1138E-05 -0.12364 -5.9499E-05 481.2453850569214 99.907 1.1514 95.774 95.302 96.454 -4.1328 125 32 6 0 0 0 1.7516E-05 5 19583 19583;19593;19639;19643;19691 141.39 80.916 1 234470000 3056 3756 1719 1721 3396;3397;3398;3399;3400 3396 -0.005428329272717747 ALDSTNVEL 9 Unmodified _ALDSTNVEL_ 0 0 0 ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25 ENST00000487325.5_1_1:156038076-156039544:+|nuORF ENST00000487325.5_1_1:156038076-156039544:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2454833984375 2 481.245472 960.476391 0.29519 0.00014206 -0.40736 -0.00019604 -0.11217 -5.3981E-05 481.2452674009798 100.13 1.2189 95.834 95.417 96.636 -4.297 121 35 5 0 0 0 0.00036884 8 19168 19081;19084;19096;19099;19168;19172;19219;19220 131.93 71.462 1 194490000 3057 3756 1719 1721 3401;3402;3403;3404;3405;3406;3407;3408 3405 -0.005428329272717747 ALDSTNVEL 9 Unmodified _ALDSTNVEL_ 0 0 0 ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25 ENST00000487325.5_1_1:156038076-156039544:+|nuORF ENST00000487325.5_1_1:156038076-156039544:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77349853515625 2 481.245472 960.476391 0.19881 9.5676E-05 -0.36213 -0.00017427 -0.16332 -7.8598E-05 481.2452666262255 99.809 1.515 95.819 95.377 96.892 -3.9895 145 43 5 0 0 0 0.00036884 8 19171 19116;19135;19147;19150;19171;19198;19244;19285 131.93 71.462 1 182930000 3058 3756 1719 1721 3409;3410;3411;3412;3413;3414;3415;3416 3413 -0.005428329272717747 ALDYYKEAA 9 Unmodified _ALDYYKEAA_ 0 0 0 REV__ENSG00000179104|ENST00000321196|TMTC2 REV__ENSG00000179104|ENST00000321196|TMTC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2702026367188 2 522.25584 1042.49713 -0.30669 -0.00016017 0.44085 0.00023024 0.13417 7.0069E-05 522.2559919649021 73.953 0.69038 70.589 70.226 70.917 -3.3643 51 19 4 0 0 0 0.62921 1 14402 14402 24.021 0 1 13494000 + 3059 18639 1720 1722 3417 3417 -0.022422425476406715 ALEAGRRKW 9 Unmodified _ALEAGRRKW_ 0 0 0 REV__nc|ENSG00000074855|Q9HCE9-2|ANO8 REV__nc|ENSG00000074855|Q9HCE9-2|ANO8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7886352539062 2 543.811982 1085.60941 0.17939 9.7552E-05 3.4262 0.0018632 3.6056 0.0019608 543.8153026161647 156.06 0.35196 150.78 150.58 150.93 -5.2854 9 9 2 0 0 0 0.7906 1 30233 30233 8.7454 1.4562 1 1047400 + 3060 14321 1721 1723 3418 3418 0.07003076039904954 ALEAYVQSV 9 Unmodified _ALEAYVQSV_ 0 0 0 ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 ENSG00000164597|ENST00000297135|COG5 ENSG00000164597|ENST00000297135|COG5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2580871582031 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 110.94 1 106.52 106.02 107.02 -4.4231 0 0 0 0.14843 1 21854 21854 30.637 15.798 1 3061 5553 1722 1724 3419 3419 0.012100613149982564 ALEAYVQSV 9 Unmodified _ALEAYVQSV_ 0 0 0 ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 ENSG00000164597|ENST00000297135|COG5 ENSG00000164597|ENST00000297135|COG5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2664794921875 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 110.93 1 106.44 105.94 106.94 -4.4915 0 0 0 0.14843 1 21293 21293 30.637 10.183 1 3062 5553 1722 1724 3420 3420 0.012100613149982564 ALEAYVQSV 9 Unmodified _ALEAYVQSV_ 0 0 0 ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 ENSG00000164597|ENST00000297135|COG5 ENSG00000164597|ENST00000297135|COG5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2585144042969 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 110.96 1 106.47 105.97 106.97 -4.4915 0 0 0 0.18039 1 21299 21299 18.614 18.206 1 3063 5553 1722 1724 3421 3421 0.012100613149982564 ALEAYVQSV 9 Unmodified _ALEAYVQSV_ 0 0 0 ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 ENSG00000164597|ENST00000297135|COG5 ENSG00000164597|ENST00000297135|COG5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2582702636719 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 110.81 1 106.58 106.08 107.08 -4.2289 0 0 0 0.19343 1 21325 21325 8.9129 6.0303 1 3064 5553 1722 1724 3422 3422 0.012100613149982564 ALEEKLENV 9 Unmodified _ALEEKLENV_ 0 0 0 ENST00000486527.6_1_2:25016788-25037388:+|nuORF;ENST00000498362.1_1_2:25016366-25039516:+|nuORF;ENST00000491031.5_1_2:25016788-25038721:+|nuORF;nc|ENSG00000138092|Q9BU64-2|CENPO;ENSG00000138092|ENST00000380834|CENPO ENST00000486527.6_1_2:25016788-25037388:+|nuORF ENST00000486527.6_1_2:25016788-25037388:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2822265625 2 522.782222 1043.54989 -0.48835 -0.0002553 0.7989 0.00041765 0.31055 0.00016235 522.7824728750161 74.627 0.55449 70.951 70.689 71.244 -3.6764 22 15 2 0 0 0 0.64397 1 14156 14156 24.991 0 1 2107100 3065 4149 1723 1725 3423 3423 0.02985715515183074 ALEGELAEP 9 Unmodified _ALEGELAEP_ 0 0 0 ENSG00000148158|ENST00000374232|SNX30 ENSG00000148158|ENST00000374232|SNX30 ENSG00000148158|ENST00000374232|SNX30 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2369689941406 2 464.73474 927.454927 0.068957 3.2047E-05 -0.209 -9.7129E-05 -0.14004 -6.5082E-05 464.7345718715251 87.134 0.55567 87.134 86.771 87.327 0 24 15 2 0 0 0 0.60805 1 16968 16968 12.532 0.89125 1 3123400 3066 4730 1724 1726 3424 3424 -0.011702179559961223 ALEKCAQINRY 11 Unmodified _ALEKCAQINRY_ 0 0 0 REV__ENST00000540844.5_1_21:30439913-30445917:-|nuORF REV__ENST00000540844.5_1_21:30439913-30445917:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2153625488281 3 436.895812 1307.66561 -0.17858 -7.8022E-05 0.25092 0.00010962 0.072333 3.1602E-05 436.8958873444966 55.773 0.45491 52.597 52.414 52.869 -3.1761 19 12 2 0 0 0 0.78947 1 10329 10329 5.0475 0.64137 1 2891100 + 3067 17254 1725 1727 3425 3425 0.02407916094398388 ALEKHTVM 8 Unmodified _ALEKHTVM_ 0 0 0 REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2503356933594 2 464.74967 927.484787 -0.11177 -5.1946E-05 -0.43366 -0.00020154 -0.54543 -0.00025349 464.74949706583493 114.5 0.67267 110.03 109.79 110.46 -4.4726 32 18 2 0 0 0 0.6199 1 22540 22540 20.871 3.9289 1 2074600 + 3068 13157 1726 1728 3426 3426 0.018144425083505666 ALELGTVGF 9 Unmodified _ALELGTVGF_ 0 0 0 REV__ENSG00000214513|ENST00000398468|NOTO REV__ENSG00000214513|ENST00000398468|NOTO MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7501525878906 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 116.44 1 112.09 111.59 112.59 -4.3585 0 0 0 0.23508 1 22418 22418 8.5933 1.304 1 + 3069 19670 1727 1729 3427 3427 0.029309801489148413 ALELLSPVV 9 Unmodified _ALELLSPVV_ 0 0 0 REV__ENSG00000128607|ENST00000335420|KLHDC10 REV__ENSG00000128607|ENST00000335420|KLHDC10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.20159912109375 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 90.87 1 90.87 90.37 91.37 0 0 0 0 0.19638 1 17757 17757 0.073264 0 1 + 3070 15930 1728 1730 3428 3428 0.09188412734147278 ALELLSPVV 9 Unmodified _ALELLSPVV_ 0 0 0 REV__ENSG00000128607|ENST00000335420|KLHDC10 REV__ENSG00000128607|ENST00000335420|KLHDC10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1954040527344 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 63.207 1 59.792 59.292 60.292 -3.4158 0 0 0 0.23508 1 11805 11805 5.2969 0.39987 1 + 3071 15930 1728 1730 3429 3429 0.09188412734147278 ALELLSPVV 9 Unmodified _ALELLSPVV_ 0 0 0 REV__ENSG00000128607|ENST00000335420|KLHDC10 REV__ENSG00000128607|ENST00000335420|KLHDC10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.2040710449219 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 105.97 1 101.59 101.09 102.09 -4.3764 0 0 0 0.23508 1 20320 20320 5.2969 0.39987 1 + 3072 15930 1728 1730 3430 3430 0.09188412734147278 ALELLSPVV 9 Unmodified _ALELLSPVV_ 0 0 0 REV__ENSG00000128607|ENST00000335420|KLHDC10 REV__ENSG00000128607|ENST00000335420|KLHDC10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.2442626953125 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 129.71 1 124.88 124.38 125.38 -4.8355 0 0 0 0.23508 1 24904 24904 5.2969 0.39987 1 + 3073 15930 1728 1730 3431 3431 0.09188412734147278 ALELLSPVV 9 Unmodified _ALELLSPVV_ 0 0 0 REV__ENSG00000128607|ENST00000335420|KLHDC10 REV__ENSG00000128607|ENST00000335420|KLHDC10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1597595214844 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 90.015 1 86.238 85.738 86.738 -3.7779 0 0 0 0.23508 1 17225 17225 2.7352 0 1 + 3074 15930 1728 1730 3432 3432 0.09188412734147278 ALELLSPVV 9 Unmodified _ALELLSPVV_ 0 0 0 REV__ENSG00000128607|ENST00000335420|KLHDC10 REV__ENSG00000128607|ENST00000335420|KLHDC10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.2117919921875 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 94.147 1 90.303 89.803 90.803 -3.844 0 0 0 0.23508 1 18058 18058 5.2969 0.39987 1 + 3075 15930 1728 1730 3433 3433 0.09188412734147278 ALELLSPVV 9 Unmodified _ALELLSPVV_ 0 0 0 REV__ENSG00000128607|ENST00000335420|KLHDC10 REV__ENSG00000128607|ENST00000335420|KLHDC10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.208251953125 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 95.58 1 91.699 91.199 92.199 -3.881 0 0 0 0.23508 1 18339 18339 2.7352 0.23671 1 + 3076 15930 1728 1730 3434 3434 0.09188412734147278 ALEMFVLVD 9 Unmodified _ALEMFVLVD_ 0 0 0 REV__RNF17|p.A642V|1|0.11|ENSG00000132972|chr13:24802547-24802547|C/T|missense_variant REV__RNF17|p.A642V|1|0.11|ENSG00000132972|chr13:24802547-24802547|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 346.1842041015625 3 346.184299 1035.53107 NaN NaN NaN NaN NaN NaN NaN 62.957 1 59.541 59.041 60.041 -3.4158 0 0 0 0.19687 1 11758 11758 0.12781 0 1 + 3077 24570 1729 1731 3435 3435 0.014724626198130863 ALEPLPIMY 9 Unmodified _ALEPLPIMY_ 0 0 0 TGFB1|p.V367M|1|0.34|ENSG00000105329|chr19:41331126-41331126|C/T|missense_variant TGFB1|p.V367M|1|0.34|ENSG00000105329|chr19:41331126-41331126|C/T|missense_variant TGFB1|p.V367M|1|0.34|ENSG00000105329|chr19:41331126-41331126|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6997680664062 2 523.783179 1045.5518 -0.26326 -0.00013789 -0.31543 -0.00016521 -0.57868 -0.0003031 524.2847956884259 92.692 0.87411 88.549 88.141 89.015 -4.1435 35 24 2 0 0 0 0.8204 1 17723 17723 4.756 0 1 6582100 3078 25840 1730 1732 3436 3436 0.030850529994495446 ALESGLNVI 9 Unmodified _ALESGLNVI_ 0 0 0 tr|U7SRE1|U7SRE1_FUSNUYbgI/familydinuclearmetalcenterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01724PE=3SV=1 tr|U7SRE1|U7SRE1_FUSNUYbgI/familydinuclearmetalcenterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01724PE=3SV=1 tr|U7SRE1|U7SRE1_FUSNUYbgI/familydinuclearmetalcenterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01724PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2279357910156 2 458.260925 914.507297 0.34034 0.00015597 -0.14964 -6.8572E-05 0.19071 8.7395E-05 458.2608144169379 74.502 0.80118 70.908 70.537 71.338 -3.594 48 22 3 0 0 0 0.16619 1 14226 14226 41.84 9.5341 1 5553100 3079 26077 1731 1733 3437 3437 0.04662365177614447 ALESPAKSA 9 Unmodified _ALESPAKSA_ 0 0 0 RAD18|p.P104del|1|0.33|ENSG00000070950|chr3:8941759-8941761|AGG/-|inframe_deletion RAD18|p.P104del|1|0.33|ENSG00000070950|chr3:8941759-8941761|AGG/-|inframe_deletion RAD18|p.P104del|1|0.33|ENSG00000070950|chr3:8941759-8941761|AGG/-|inframe_deletion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22930908203125 2 437.23745 872.460347 -0.12147 -5.311E-05 -0.30802 -0.00013468 -0.42949 -0.00018779 437.2373329036224 81.468 0.58118 77.911 77.655 78.236 -3.557 27 16 2 0 0 0 0.35556 1 15899 15899 4.477 3.7956 1 947440 3080 12855 1732 1734 3438 3438 0.019015056264720442 ALESPEVE 8 Unmodified _ALESPEVE_ 0 0 0 ENST00000535818.1_1_11:60906157-60928919:-|nuORF ENST00000535818.1_1_11:60906157-60928919:-|nuORF ENST00000535818.1_1_11:60906157-60928919:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2154235839844 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 94.075 1 90.231 89.731 90.731 -3.844 0 0 0 0.21323 1 18043 18043 14.582 1.0738 1 3081 11019 1733 1735 3439 3439 -0.028581933643749835 ALESQTKP 8 Unmodified _ALESQTKP_ 0 0 0 REV__ENSG00000150527|ENST00000640607|MIA2 REV__ENSG00000150527|ENST00000640607|MIA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2357177734375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 62.797 1 59.549 59.049 60.049 -3.2482 0 0 0 0.21452 1 11775 11775 13.508 4.1604 1 + 3082 17033 1734 1736 3440 3440 0.01901505626483413 ALETEKVQY 9 Unmodified _ALETEKVQY_ 0 0 0 ENSG00000115073|ENST00000289228|ACTR1B ENSG00000115073|ENST00000289228|ACTR1B ENSG00000115073|ENST00000289228|ACTR1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2840576171875 2 540.782222 1079.54989 -0.17137 -9.2676E-05 -2.3177 -0.0012534 -2.4891 -0.0013461 540.7810171313081 20.248 0.35471 18.863 18.672 19.027 -1.3847 13 9 2 0 0 0 0.59384 1 3137 3137 13.508 0 1 653430 3083 2822 1735 1737 3441 3441 0.013297155152031337 ALETEKVQY 9 Unmodified _ALETEKVQY_ 0 0 0 ENSG00000115073|ENST00000289228|ACTR1B ENSG00000115073|ENST00000289228|ACTR1B ENSG00000115073|ENST00000289228|ACTR1B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.782222 1079.54989 -0.76364 -0.00041296 -2.1934 -0.0011861 -2.957 -0.0015991 540.7813042371862 20.563 0.24519 18.842 18.73 18.975 -1.7211 -0.0616 0.0007164 NaN 13.508 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 538270 3084 2822 1735 1737 0.013297155152031337 ALETSTQVA 9 Unmodified _ALETSTQVA_ 0 0 0 nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128 nc|ENSG00000100629|Q6ZU80-1|CEP128 nc|ENSG00000100629|Q6ZU80-1|CEP128 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2400817871094 2 460.24019 918.465826 -0.038681 -1.7803E-05 0.089768 4.1315E-05 0.051086 2.3512E-05 460.2402403736512 47.977 0.56563 45.035 44.686 45.252 -2.9421 22 15 2 0 0 0 0.39168 1 8708 8708 0.029283 0 1 876790 3085 1999 1736 1738 3442 3442 0.0033318441828669165 ALFDAQAQV 9 Unmodified _ALFDAQAQV_ 0 0 0 ENSG00000105397|ENST00000525621|TYK2;TYK2|p.L202Pfs*105|1|0.26|ENSG00000105397|chr19:10366441-10366442|-/G|frameshift_variant ENSG00000105397|ENST00000525621|TYK2;TYK2|p.L202Pfs*105|1|0.26|ENSG00000105397|chr19:10366441-10366442|-/G|frameshift_variant TYK2|p.L202Pfs*105|1|0.26|ENSG00000105397|chr19:10366441-10366442|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7786865234375 2 481.750724 961.486896 0.026705 1.2865E-05 -0.18628 -8.9739E-05 -0.15957 -7.6874E-05 481.7506097423099 111.04 0.70129 111.04 110.68 111.38 0 29 19 2 0 0 0 0.8319 1 21886 21886 4.3292 0 1 1888400 3086 2306;26539 1737 1739 3443 3443 0.0046119451779986775 ALFDEWNSL 9 Unmodified _ALFDEWNSL_ 0 0 0 nc|ENSG00000101844|Q8WYN0-3|ATG4A;nc|ENSG00000101844|Q8WYN0-2|ATG4A;nc|ENSG00000101844|Q8WYN0-5|ATG4A;ENSG00000101844|ENST00000372232|ATG4A nc|ENSG00000101844|Q8WYN0-3|ATG4A nc|ENSG00000101844|Q8WYN0-3|ATG4A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.767578125 2 547.761289 1093.50803 NaN NaN NaN NaN NaN NaN NaN 146.24 1 141.24 140.74 141.74 -5 0 0 0 0.23508 1 28296 28296 11.64 0.81637 1 3087 2088 1738 1740 3444 3444 -0.03498840173347162 ALFDTALA 8 Unmodified _ALFDTALA_ 0 0 0 REV__ENST00000356698.8_1_6:127440327-127469799:+|nuORF REV__ENST00000356698.8_1_6:127440327-127469799:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.11627197265625 2 411.223811 820.433069 NaN NaN NaN NaN NaN NaN NaN 47.863 1 44.913 44.413 45.413 -2.9499 0 0 0 0.21486 1 8750 8750 11.114 0 1 + 3088 20818 1739 1741 3445 3445 0.015670220860897643 ALFFYMPSRL 10 Unmodified _ALFFYMPSRL_ 0 0 0 REV__OR4C13|p.F105Sfs*11|1|0.11|ENSG00000258817|chr11:49952731-49952731|T/-|frameshift_variant REV__OR4C13|p.F105Sfs*11|1|0.11|ENSG00000258817|chr11:49952731-49952731|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7529907226562 2 622.828452 1243.64235 NaN NaN NaN NaN NaN NaN NaN 150.68 1 145.48 144.98 145.98 -5.1994 0 0 0 0.22588 1 29198 29198 9.3831 0 1 + 3089 19877 1740 1742 3446 3446 0.030275220477278708 ALFFYRYIYVS 11 Unmodified _ALFFYRYIYVS_ 0 0 0 REV__nc|ENSG00000135916|Q9NQX7-3|ITM2C REV__nc|ENSG00000135916|Q9NQX7-3|ITM2C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24432373046875 3 481.255334 1440.74417 NaN NaN NaN NaN NaN NaN NaN 92.085 1 88.159 87.659 88.659 -3.9251 0 0 0 0.22632 1 18031 18031 0.026206 0 1 + 3090 16299 1741 1743 3447 3447 0.041430916711306054 ALFGDVKFV 9 Unmodified _ALFGDVKFV_ 0 0 0 ENSG00000183696|ENST00000395564|UPP1 ENSG00000183696|ENST00000395564|UPP1 ENSG00000183696|ENST00000395564|UPP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 497.9537048339844 2 498.28166 994.548768 0.20373 0.00010151 0.51863 0.00025842 0.72236 0.00035994 498.28181806919736 164.04 0.43416 164.04 163.79 164.22 0 26 12 3 0 0 0 0.068211 1 33109 33109 81.552 66.565 1 43831000 3091 6862 1742 1744 3448 3448 0.051275459369549026 ALFHHRRST 9 Unmodified _ALFHHRRST_ 0 0 0 REV__ENST00000511251.1_1_4:172734817-172734943:+|nuORF REV__ENST00000511251.1_1_4:172734817-172734943:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21795654296875 3 375.540579 1123.59991 -0.10161 -3.8158E-05 -1.0115 -0.00037987 -1.1131 -0.00041802 375.5401679632339 32.627 0.38824 30.397 30.189 30.578 -2.2305 15 10 2 0 0 0 0.63755 1 5958 5958 0.029283 0 1 1289100 + 3092 22547 1743 1745 3449 3449 0.043053077543845575 ALFNGAQKL 9 Unmodified _ALFNGAQKL_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;SEC61A2|p.A387Kfs*3|1|0.04|ENSG00000065665|chr10:12161111-12161114|CAGC/-|frameshift_variant;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2343444824219 2 481.276909 960.539266 -0.20455 -9.8444E-05 0.55459 0.00026691 0.35004 0.00016847 481.277094804239 94.968 0.68907 94.968 94.557 95.246 0 32 19 2 0 0 0 0.042631 8 18584 18536;18539;18564;18584;18600;18608;18621;18624 74.423 52.881 1 4317600 3093 1291 1744 1746 3450;3451;3452;3453;3454;3455;3456;3457 3453 0.05741777651417124 ALFNGAQKL 9 Unmodified _ALFNGAQKL_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;SEC61A2|p.A387Kfs*3|1|0.04|ENSG00000065665|chr10:12161111-12161114|CAGC/-|frameshift_variant;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7787170410156 2 481.276909 960.539266 0.07118 3.4257E-05 0.22979 0.00011059 0.30097 0.00014485 481.27690183073156 98.861 0.79873 94.728 94.228 95.027 -4.1326 56 22 3 0 0 0 0.042631 4 19381 19334;19336;19381;19422 86.332 56.491 1 6125300 3094 1291 1744 1746 3458;3459;3460;3461 3460 0.05741777651417124 ALFNGAQKL 9 Unmodified _ALFNGAQKL_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;SEC61A2|p.A387Kfs*3|1|0.04|ENSG00000065665|chr10:12161111-12161114|CAGC/-|frameshift_variant;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7786560058594 2 481.276909 960.539266 0.24655 0.00011866 0.07207 3.4685E-05 0.31862 0.00015334 481.27681905961043 98.977 0.66769 94.708 94.367 95.034 -4.2692 45 18 3 0 0 0 0.058839 5 18922 18865;18879;18922;18958;18959 67.838 44.048 1 5304700 3095 1291 1744 1746 3462;3463;3464;3465;3466 3464 0.05741777651417124 ALFNGAQKL 9 Unmodified _ALFNGAQKL_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;SEC61A2|p.A387Kfs*3|1|0.04|ENSG00000065665|chr10:12161111-12161114|CAGC/-|frameshift_variant;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7786865234375 2 481.276909 960.539266 0.071565 3.4443E-05 0.10182 4.9004E-05 0.17338 8.3446E-05 481.2768445315135 98.656 0.73943 94.699 94.332 95.071 -3.9564 49 21 3 0 0 0 0.011913 6 18941 18894;18898;18905;18938;18941;18990 105.38 89.906 1 6915300 3096 1291 1744 1746 3467;3468;3469;3470;3471;3472 3471 0.05741777651417124 ALFPERITV 9 Unmodified _ALFPERITV_ 0 0 0 nc|ENSG00000137343|Q5SQI0-3|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1 nc|ENSG00000137343|Q5SQI0-3|ATAT1 nc|ENSG00000137343|Q5SQI0-3|ATAT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6901245117188 2 523.305667 1044.59678 0.19118 0.00010005 0.030117 1.5761E-05 0.2213 0.00011581 523.3056278844234 144.83 1.0746 144.83 144.4 145.48 0 73 30 4 0 0 0 0.078741 1 28937 28937 70.332 18.064 1 22539000 3097 12346 1745 1747 3473 3473 0.07626619856978323 ALFPERITV 9 Unmodified _ALFPERITV_ 0 0 0 nc|ENSG00000137343|Q5SQI0-3|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1 nc|ENSG00000137343|Q5SQI0-3|ATAT1 nc|ENSG00000137343|Q5SQI0-3|ATAT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6991577148438 2 523.305667 1044.59678 -0.085693 -4.4844E-05 0.19277 0.00010088 0.10708 5.6036E-05 523.3057385018263 149.37 0.95021 144.64 144.13 145.08 -4.7323 72 26 4 0 0 0 0.11519 1 29666 29666 61.602 15.902 1 32745000 3098 12346 1745 1747 3474 3474 0.07626619856978323 ALFPERITV 9 Unmodified _ALFPERITV_ 0 0 0 nc|ENSG00000137343|Q5SQI0-3|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1 nc|ENSG00000137343|Q5SQI0-3|ATAT1 nc|ENSG00000137343|Q5SQI0-3|ATAT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6795654296875 2 523.305667 1044.59678 -0.45636 -0.00023882 0.61655 0.00032265 0.16019 8.3829E-05 523.3059234052195 149.88 0.9108 144.68 144.22 145.13 -5.1994 67 25 4 0 0 0 0.040668 1 29007 29007 79.596 27.328 1 25474000 3099 12346 1745 1747 3475 3475 0.07626619856978323 ALFPERITV 9 Unmodified _ALFPERITV_ 0 0 0 nc|ENSG00000137343|Q5SQI0-3|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1 nc|ENSG00000137343|Q5SQI0-3|ATAT1 nc|ENSG00000137343|Q5SQI0-3|ATAT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6910400390625 2 523.305667 1044.59678 0.40032 0.00020949 -0.23842 -0.00012477 0.16189 8.4719E-05 523.3054580032159 149.75 0.88995 144.63 144.14 145.03 -5.1204 72 24 4 0 0 0 0.040668 1 28980 28980 70.332 18.064 1 24819000 3100 12346 1745 1747 3476 3476 0.07626619856978323 ALFPGEELKHA 11 Unmodified _ALFPGEELKHA_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 404.3091125488281 3 404.552151 1210.63462 -0.20696 -8.3726E-05 0.042429 1.7165E-05 -0.16453 -6.6562E-05 404.5522006965855 92.404 0.66605 88.479 88.161 88.827 -3.9251 22 18 2 0 0 0 0.96192 1 18062 18062 1.3296 0.55311 1 1821200 3101 2136;12261 1746 1748 3477 3477 0.03773086051796781 ALFPGEELKHA 11 Unmodified _ALFPGEELKHA_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 404.552151 1210.63462 -0.12119 -4.9027E-05 0.14254 5.7664E-05 0.021348 8.6363E-06 404.5521545547403 88.622 0.67342 88.622 88.361 89.034 0 0.058322 -7.1844E-06 NaN 1.3296 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1630500 3102 2136;12261 1746 1748 0.03773086051796781 ALFPGEELKHA 11 Unmodified _ALFPGEELKHA_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 404.552151 1210.63462 -0.39046 -0.00015796 0.29319 0.00011861 -0.097278 -3.9354E-05 404.55214202643293 92.399 0.91267 88.59 88.14 89.053 -3.8083 0.026768 0.00017565 NaN 1.3296 35 26 2 NaN NaN NaN NaN 0 NaN NaN 0 975720 3103 2136;12261 1746 1748 0.03773086051796781 ALFQRPPLI 9 Unmodified _ALFQRPPLI_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 528.8386840820312 2 527.824027 1053.6335 0.46485 0.00024536 -0.2373 -0.00012525 0.22755 0.00012011 527.8238664796125 156.89 0.81425 151.62 151.19 152.01 -5.2712 60 22 3 0 0 0 0.10537 1 30423 30423 51.415 40.516 1 7576300 3104 3644 1747 1749 3478 3478 0.10882916473565274 ALFQRPPLI 9 Unmodified _ALFQRPPLI_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 527.824027 1053.6335 0.14159 7.4732E-05 0.2018 0.00010651 0.34338 0.00018125 527.8240618963182 151.82 0.81618 151.82 151.38 152.19 0 0.12082 7.7815E-05 NaN 51.415 62 22 4 NaN NaN NaN NaN 0 NaN NaN 0 9833500 3105 3644 1747 1749 0.10882916473565274 ALFQRPPLI 9 Unmodified _ALFQRPPLI_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 527.824027 1053.6335 0.087304 4.6081E-05 0.25658 0.00013543 0.34388 0.00018151 527.8240788198434 156.37 0.87283 151.58 151.08 151.95 -4.7885 -0.11475 0.00013564 NaN 51.415 64 24 4 NaN NaN NaN NaN 0 NaN NaN 0 8425800 3106 3644 1747 1749 0.10882916473565274 ALFQRPPLI 9 Unmodified _ALFQRPPLI_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 527.824027 1053.6335 0.065271 3.4451E-05 0.21783 0.00011497 0.2831 0.00014943 527.8240819375278 157.06 0.79861 151.77 151.31 152.11 -5.2854 0.075695 9.4737E-05 NaN 51.415 59 22 3 NaN NaN NaN NaN 0 NaN NaN 0 6214700 3107 3644 1747 1749 0.10882916473565274 ALFRRKFSQLL 11 Unmodified _ALFRRKFSQLL_ 0 0 0 REV__nc|ENSG00000158483|Q9NVL1-2|FAM86C1P REV__nc|ENSG00000158483|Q9NVL1-2|FAM86C1P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2349548339844 3 460.282106 1377.82449 NaN NaN NaN NaN NaN NaN NaN 143.01 1 143.01 142.51 143.51 0 0 0 0 0.22632 1 28527 28527 0.172 0 1 + 3108 24112 1748 1750 3479 3479 0.1506899778485149 ALFSGDALSV 10 Unmodified _ALFSGDALSV_ 0 0 0 nc|ENSG00000103253|Q6PII5|HAGHL;ENSG00000103253|ENST00000389703|HAGHL nc|ENSG00000103253|Q6PII5|HAGHL nc|ENSG00000103253|Q6PII5|HAGHL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2584533691406 2 490.258382 978.502212 0.21652 0.00010615 -0.15497 -7.5974E-05 0.061553 3.0177E-05 490.25831527336044 149.91 0.6346 145.18 144.79 145.43 -4.7323 33 17 3 0 0 0 0.0044467 4 29763 29760;29763;29764;29804 81.613 7.6518 1 3295100 3109 2177 1749 1751 3480;3481;3482;3483 3481 0.012100613149982564 ALFSGDALSV 10 Unmodified _ALFSGDALSV_ 0 0 0 nc|ENSG00000103253|Q6PII5|HAGHL;ENSG00000103253|ENST00000389703|HAGHL nc|ENSG00000103253|Q6PII5|HAGHL nc|ENSG00000103253|Q6PII5|HAGHL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2585144042969 2 490.258382 978.502212 0.22811 0.00011183 -0.14662 -7.1882E-05 0.081487 3.995E-05 490.25832064229746 150.39 0.59697 145.19 144.92 145.52 -5.1994 26 16 2 0 0 0 0.0044467 2 29148 29148;29150 54.774 2.5052 1 2100700 3110 2177 1749 1751 3484;3485 3484 0.012100613149982564 ALFSGDALSV 10 Unmodified _ALFSGDALSV_ 0 0 0 nc|ENSG00000103253|Q6PII5|HAGHL;ENSG00000103253|ENST00000389703|HAGHL nc|ENSG00000103253|Q6PII5|HAGHL nc|ENSG00000103253|Q6PII5|HAGHL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2584228515625 2 490.258382 978.502212 0.11382 5.5801E-05 -0.093674 -4.5925E-05 0.020145 9.8764E-06 490.25834365887647 150.38 0.60034 145.26 144.89 145.49 -5.1204 27 16 2 0 0 0 0.089578 2 29134 29134;29143 64.236 11.968 1 2815300 3111 2177 1749 1751 3486;3487 3486 0.012100613149982564 ALFSQDISV 9 Unmodified _ALFSQDISV_ 0 0 0 ENSG00000151612|ENST00000508784|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;nc|ENSG00000151612|Q17R98-3|ZNF827 ENSG00000151612|ENST00000508784|ZNF827 ENSG00000151612|ENST00000508784|ZNF827 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2579650878906 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 145.17 1 145.17 144.67 145.67 0 0 0 0 0.12107 1 29010 29010 18.614 12.026 1 3112 4876 1750 1752 3488 3488 0.012100613149982564 ALFSQDISV 9 Unmodified _ALFSQDISV_ 0 0 0 ENSG00000151612|ENST00000508784|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;nc|ENSG00000151612|Q17R98-3|ZNF827 ENSG00000151612|ENST00000508784|ZNF827 ENSG00000151612|ENST00000508784|ZNF827 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27001953125 2 490.258382 978.502212 0.21652 0.00010615 -0.15497 -7.5974E-05 0.061553 3.0177E-05 490.25831527336044 149.91 0.6346 145.18 144.79 145.43 -4.7323 33 17 3 0 0 0 0.081252 1 29729 29729 31.728 17.118 1 3295100 3113 4876 1750 1752 3489 3489 0.012100613149982564 ALFSQDISV 9 Unmodified _ALFSQDISV_ 0 0 0 ENSG00000151612|ENST00000508784|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;nc|ENSG00000151612|Q17R98-3|ZNF827 ENSG00000151612|ENST00000508784|ZNF827 ENSG00000151612|ENST00000508784|ZNF827 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2584228515625 2 490.258382 978.502212 0.11382 5.5801E-05 -0.093674 -4.5925E-05 0.020145 9.8764E-06 490.25834365887647 150.38 0.60034 145.26 144.89 145.49 -5.1204 27 16 2 0 0 0 0.039703 2 29131 29131;29180 67.187 27.179 1 2815300 3114 4876 1750 1752 3490;3491 3490 0.012100613149982564 ALFVPFRL 8 Unmodified _ALFVPFRL_ 0 0 0 REV__ENSG00000215644|ENST00000400723|GCGR REV__ENSG00000215644|ENST00000400723|GCGR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23809814453125 2 481.794738 961.574923 0.28457 0.0001371 0.72159 0.00034766 1.0062 0.00048476 481.7950088294358 48.754 0.67199 48.754 48.488 49.16 0 33 18 2 0 0 0 0.98792 1 9220 9220 9.3474 2.9933 1 2628800 + 3115 19692 1751 1753 3492 3492 0.09259859899088951 ALFVPFRL 8 Unmodified _ALFVPFRL_ 0 0 0 REV__ENSG00000215644|ENST00000400723|GCGR REV__ENSG00000215644|ENST00000400723|GCGR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2379455566406 2 481.794738 961.574923 -0.12688 -6.1131E-05 1.1803 0.00056866 1.0534 0.00050753 481.7952225210851 51.697 0.54035 48.815 48.529 49.07 -2.8824 35 15 3 0 0 0 0.98792 1 9801 9801 5.2307 2.3415 1 2780800 + 3116 19692 1751 1753 3493 3493 0.09259859899088951 ALFVPFRL 8 Unmodified _ALFVPFRL_ 0 0 0 REV__ENSG00000215644|ENST00000400723|GCGR REV__ENSG00000215644|ENST00000400723|GCGR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2367248535156 2 481.794738 961.574923 0.079827 3.846E-05 1.0104 0.00048678 1.0902 0.00052524 481.7951660719356 51.902 0.63753 48.856 48.504 49.141 -3.0453 29 17 2 0 0 0 0.87247 1 9471 9471 0.62683 0 1 2166900 + 3117 19692 1751 1753 3494 3494 0.09259859899088951 ALGAAEMRP 9 Unmodified _ALGAAEMRP_ 0 0 0 MTR|p.G1106Wfs*10|1|0.49|ENSG00000116984|chr1:236894464-236894465|-/T|frameshift_variant;nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR;MTR|p.R518Gfs*7|1|0.16|ENSG00000116984|chr1:236850378-236850378|C/-|frameshift_variant;MTR|p.F598Sfs*14|1|0.12|ENSG00000116984|chr1:236852615-236852615|T/-|frameshift_variant;MTR|p.T834Nfs*6|1|0.29|ENSG00000116984|chr1:236874751-236874752|-/A|frameshift_variant MTR|p.G1106Wfs*10|1|0.49|ENSG00000116984|chr1:236894464-236894465|-/T|frameshift_variant MTR|p.G1106Wfs*10|1|0.49|ENSG00000116984|chr1:236894464-236894465|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.238525390625 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 81.497 1 77.809 77.309 78.309 -3.6879 0 0 0 0.23508 1 15531 15531 8.5933 0 1 3118 2964 1752 1754 3495 3495 0.003732718485366604 ALGARCPLSR 10 Unmodified _ALGARCPLSR_ 0 0 0 ENST00000390548.6_1_14:106203725-106203890:-|nuORF ENST00000390548.6_1_14:106203725-106203890:-|nuORF ENST00000390548.6_1_14:106203725-106203890:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2805786132812 2 522.292568 1042.57058 NaN NaN NaN NaN NaN NaN NaN 72.838 1 72.838 72.338 73.338 0 0 0 0 0.18733 1 14131 14131 30.637 1.555 1 3119 9361 1753 1755 3496 3496 0.05100027413868702 ALGDIREV 8 Unmodified _ALGDIREV_ 0 0 0 ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant;ANKRD40|p.G147Afs*26|2|0.23|ENSG00000154945|chr17:50699737-50699737|C/-|frameshift_variant;ENSG00000154945|ENST00000285243|ANKRD40;ENST00000507114.1_1_17:48777854-48785015:-|nuORF ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant;ENST00000507114.1_1_17:48777854-48785015:-|nuORF ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22802734375 2 436.745442 871.476331 0.28556 0.00012472 -0.37387 -0.00016329 -0.088315 -3.8571E-05 436.74525322368225 74.828 0.84671 74.828 74.36 75.206 0 71 23 4 0 0 0 8448 1 14557 14557 51.63 42.733 1 21131000 3120 163;10690 1754 1756 3497 3497 0.035452118633770624 ALGDIREV 8 Unmodified _ALGDIREV_ 0 0 0 ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant;ANKRD40|p.G147Afs*26|2|0.23|ENSG00000154945|chr17:50699737-50699737|C/-|frameshift_variant;ENSG00000154945|ENST00000285243|ANKRD40;ENST00000507114.1_1_17:48777854-48785015:-|nuORF ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant;ENST00000507114.1_1_17:48777854-48785015:-|nuORF ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2283630371094 2 436.745442 871.476331 -0.1273 -5.56E-05 0.14155 6.1821E-05 0.014245 6.2214E-06 436.7454608112436 78.094 0.9662 74.631 74.181 75.148 -3.4633 76 26 4 0 0 0 0.03601 3 15237 15196;15237;15250 126.57 26.767 1 23031000 3121 163;10690 1754 1756 3498;3499;3500 3499 0.035452118633770624 ALGDIREV 8 Unmodified _ALGDIREV_ 0 0 0 ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant;ANKRD40|p.G147Afs*26|2|0.23|ENSG00000154945|chr17:50699737-50699737|C/-|frameshift_variant;ENSG00000154945|ENST00000285243|ANKRD40;ENST00000507114.1_1_17:48777854-48785015:-|nuORF ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant;ENST00000507114.1_1_17:48777854-48785015:-|nuORF ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.232177734375 2 436.745442 871.476331 -0.053273 -2.3267E-05 0.053009 2.3151E-05 -0.00026396 -1.1528E-07 436.74542349116484 78.485 0.81209 74.68 74.28 75.092 -3.8048 70 22 4 0 0 0 0.14361 1 14851 14851 92.653 27.418 1 18337000 3122 163;10690 1754 1756 3501 3501 0.035452118633770624 ALGDIREV 8 Unmodified _ALGDIREV_ 0 0 0 ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant;ANKRD40|p.G147Afs*26|2|0.23|ENSG00000154945|chr17:50699737-50699737|C/-|frameshift_variant;ENSG00000154945|ENST00000285243|ANKRD40;ENST00000507114.1_1_17:48777854-48785015:-|nuORF ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant;ENST00000507114.1_1_17:48777854-48785015:-|nuORF ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2359619140625 2 436.745442 871.476331 -0.17466 -7.6282E-05 0.16376 7.1521E-05 -0.0109 -4.7605E-06 436.74545638916425 78.367 1.0523 74.708 74.268 75.321 -3.6588 82 29 4 0 0 0 0.037013 1 14907 14907 92.653 13.925 1 21138000 3123 163;10690 1754 1756 3502 3502 0.035452118633770624 ALGDRGPVM 9 Unmodified _ALGDRGPVM_ 0 0 0 REV__nc|ENSG00000143437|P27540-2|ARNT REV__nc|ENSG00000143437|P27540-2|ARNT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2383728027344 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 88.256 1 88.256 87.756 88.756 0 0 0 0 0.23508 1 17225 17225 9.3474 0.75416 1 + 3124 16728 1755 1757 3503 3503 0.003732718485480291 ALGEHEWL 8 Unmodified _ALGEHEWL_ 0 0 0 REV__ENST00000543915.6_1_16:27325322-27356207:+|nuORF REV__ENST00000543915.6_1_16:27325322-27356207:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.740478515625 2 477.737617 953.460681 0.090997 4.3473E-05 0.073136 3.494E-05 0.16413 7.8412E-05 477.7375953232495 147.65 0.64075 142.95 142.63 143.27 -4.7095 43 18 3 0 0 0 0.69085 1 29278 29278 15.768 1.1865 1 6495400 + 3125 22879 1756 1758 3504 3504 -0.017910746536699662 ALGELEKR 8 Unmodified _ALGELEKR_ 0 0 0 REV__nc|ENSG00000167110|Q08379-2|GOLGA2 REV__nc|ENSG00000167110|Q08379-2|GOLGA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2390441894531 2 458.266542 914.51853 NaN NaN NaN NaN NaN NaN NaN 102.27 1 97.95 97.45 98.45 -4.3208 0 0 0 0.21486 1 19581 19581 7.9102 0 1 + 3126 17903 1757 1759 3505 3505 0.05785187271760606 ALGGRWPFG 9 Unmodified _ALGGRWPFG_ 0 0 0 ENSG00000170128|ENST00000304244|GPR25 ENSG00000170128|ENST00000304244|GPR25 ENSG00000170128|ENST00000304244|GPR25 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2433166503906 2 480.756144 959.497735 0.17543 8.434E-05 1.4451 0.00069472 1.6205 0.00077906 480.75703179004836 97.377 0.71572 93.142 92.746 93.462 -4.2348 33 20 2 0 0 0 0.8204 1 18556 18556 4.756 0.42677 1 1904800 3127 6039 1758 1760 3506 3506 0.016366416827622743 ALGHVRYV 8 Unmodified _ALGHVRYV_ 0 0 0 ENSG00000155189|ENST00000285518|AGPAT5 ENSG00000155189|ENST00000285518|AGPAT5 ENSG00000155189|ENST00000285518|AGPAT5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2384033203125 2 457.763969 913.513385 -0.16375 -7.4958E-05 0.59414 0.00027198 0.43039 0.00019702 457.76406310066113 47.729 0.41789 44.86 44.6 45.018 -2.869 16 11 2 0 0 0 0.18731 2 9013 8991;9013 46.921 18.748 1 1652700 3128 5038 1759 1761 3507;3508 3508 0.05316928199795257 ALGHVRYV 8 Unmodified _ALGHVRYV_ 0 0 0 ENSG00000155189|ENST00000285518|AGPAT5 ENSG00000155189|ENST00000285518|AGPAT5 ENSG00000155189|ENST00000285518|AGPAT5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24127197265625 2 457.763969 913.513385 -0.044726 -2.0474E-05 0.30695 0.00014051 0.26223 0.00012004 457.7640819051806 47.875 0.45952 44.933 44.615 45.074 -2.9421 21 12 2 0 0 0 0.81042 1 8695 8695 23.148 2.2772 1 1554800 3129 5038 1759 1761 3509 3509 0.05316928199795257 ALGKAPSKV 9 Unmodified _ALGKAPSKV_ 0 0 0 nc|ENSG00000115561|Q9Y3E7-2|CHMP3;nc|ENSG00000115561|Q9Y3E7-4|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3 nc|ENSG00000115561|Q9Y3E7-2|CHMP3 nc|ENSG00000115561|Q9Y3E7-2|CHMP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 436.7767333984375 2 435.774003 869.533452 -0.13493 -5.88E-05 0.2979 0.00012982 0.16296 7.1016E-05 435.77407531536073 22.709 0.35719 21.256 21.083 21.44 -1.4535 22 9 4 0 0 0 0.58804 1 3642 3642 13.906 0.39817 1 1576000 3130 2866 1760 1762 3510 3510 0.09346679139753178 ALGKAPSKV 9 Unmodified _ALGKAPSKV_ 0 0 0 nc|ENSG00000115561|Q9Y3E7-2|CHMP3;nc|ENSG00000115561|Q9Y3E7-4|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3 nc|ENSG00000115561|Q9Y3E7-2|CHMP3 nc|ENSG00000115561|Q9Y3E7-2|CHMP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 435.774003 869.533452 0.14849 6.4707E-05 0.024397 1.0631E-05 0.17289 7.5339E-05 435.7739134553036 21.305 0.26845 21.305 21.159 21.427 0 0.022255 0.00015961 NaN 13.906 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1210700 3131 2866 1760 1762 0.09346679139753178 ALGKAPSKV 9 Unmodified _ALGKAPSKV_ 0 0 0 nc|ENSG00000115561|Q9Y3E7-2|CHMP3;nc|ENSG00000115561|Q9Y3E7-4|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3 nc|ENSG00000115561|Q9Y3E7-2|CHMP3 nc|ENSG00000115561|Q9Y3E7-2|CHMP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 435.774003 869.533452 0.57391 0.0002501 -0.60272 -0.00026265 -0.028812 -1.2556E-05 435.77371220158943 22.841 0.3085 21.288 21.132 21.441 -1.5532 0.0050173 -0.00038696 NaN 13.906 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1589200 3132 2866 1760 1762 0.09346679139753178 ALGKKILY 8 Unmodified _ALGKKILY_ 0 0 0 REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7593688964844 2 453.294571 904.574589 -0.11786 -5.3425E-05 0.37141 0.00016836 0.25355 0.00011493 453.29469967085225 102.3 0.87047 98.11 97.646 98.517 -4.1861 41 24 2 0 0 0 0.97994 1 20044 20044 10.183 0 1 2494500 + 3133 16146 1761 1763 3511 3511 0.11848440179232966 ALGLSSVLAF 10 Unmodified _ALGLSSVLAF_ 0 0 0 REV__ENSG00000171574|ENST00000306910|ZNF584 REV__ENSG00000171574|ENST00000306910|ZNF584 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27020263671875 2 489.286943 976.559333 -0.064385 -3.1503E-05 0.22754 0.00011133 0.16315 7.9827E-05 489.28702933594246 131.62 0.47388 126.82 126.57 127.05 -4.799 22 12 2 0 0 0 0.6417 1 25333 25333 16.942 1.0951 1 1534700 + 3134 18235 1762 1764 3512 3512 0.07011528591374372 ALGLSSVLAF 10 Unmodified _ALGLSSVLAF_ 0 0 0 REV__ENSG00000171574|ENST00000306910|ZNF584 REV__ENSG00000171574|ENST00000306910|ZNF584 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.286943 976.559333 0.10088 4.9358E-05 0.27266 0.00013341 0.37353 0.00018277 489.2868845206277 131.39 0.64244 126.76 126.39 127.03 -4.6359 -0.039985 0.00012388 NaN 16.942 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2407300 + 3135 18235 1762 1764 0.07011528591374372 ALGLSSVLAF 10 Unmodified _ALGLSSVLAF_ 0 0 0 REV__ENSG00000171574|ENST00000306910|ZNF584 REV__ENSG00000171574|ENST00000306910|ZNF584 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.286943 976.559333 0.15224 7.4487E-05 -0.082788 -4.0507E-05 0.069447 3.398E-05 489.286941381819 131.66 0.61559 126.81 126.56 127.18 -4.8527 0.015378 -0.00022395 NaN 16.942 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2513300 + 3136 18235 1762 1764 0.07011528591374372 ALGLSSVLAF 10 Unmodified _ALGLSSVLAF_ 0 0 0 REV__ENSG00000171574|ENST00000306910|ZNF584 REV__ENSG00000171574|ENST00000306910|ZNF584 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.286943 976.559333 -0.064385 -3.1503E-05 0.22754 0.00011133 0.16315 7.9827E-05 489.28702933594246 131.62 0.47388 126.82 126.57 127.05 -4.799 0.024607 7.9724E-05 NaN 16.942 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1534700 + 3137 18235 1762 1764 0.07011528591374372 ALGLYCCCA 9 Unmodified _ALGLYCCCA_ 0 0 0 REV__nc|ENSG00000104635|Q15043-2|SLC39A14 REV__nc|ENSG00000104635|Q15043-2|SLC39A14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2378845214844 2 458.689909 915.365266 NaN NaN NaN NaN NaN NaN NaN 120.04 1 115.52 115.02 116.02 -4.5221 0 0 0 0.23508 1 23668 23668 9.3474 1.4373 1 + 3138 14930 1763 1765 3513 3513 -0.095802104322388 ALGPGGCRD 9 Unmodified _ALGPGGCRD_ 0 0 0 ENST00000529687.5_1_8:42911817-42912084:+|nuORF ENST00000529687.5_1_8:42911817-42912084:+|nuORF ENST00000529687.5_1_8:42911817-42912084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 423.1560974121094 2 423.200344 844.386136 NaN NaN NaN NaN NaN NaN NaN 127.87 1 123.17 122.67 123.67 -4.6998 0 0 0 0.23508 1 24601 24601 5.2307 2.3415 1 3139 10949 1764 1766 3514 3514 -0.042281607366930984 ALGPGSEAVE 10 Unmodified _ALGPGSEAVE_ 0 0 0 REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13 REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2461853027344 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 74.698 1 71.334 70.834 71.834 -3.3643 0 0 0 2.8426 1 14573 14573 0.51642 0 1 + 3140 13922 1765 1767 3515 3515 -0.01691102098754982 ALGRQQAM 8 Unmodified _ALGRQQAM_ 0 0 0 ENSG00000171540|ENST00000306422|OTP ENSG00000171540|ENST00000306422|OTP ENSG00000171540|ENST00000306422|OTP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2169494628906 2 437.731812 873.449071 -0.19749 -8.6449E-05 1.0778 0.00047181 0.88035 0.00038536 437.7321729159607 87.058 0.84256 83.331 82.906 83.749 -3.727 50 23 3 0 0 0 0.95284 1 17011 17011 5.2307 0 1 3890000 3141 6152 1766 1768 3516 3516 0.007284050513476359 ALGSVKYV 8 Unmodified _ALGSVKYV_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2;ICE2|p.R760Tfs*25|1|0.32|ENSG00000128915|chr15:60447987-60447988|-/T|frameshift_variant ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 418.2810974121094 2 418.747453 835.480354 NaN NaN NaN NaN NaN NaN NaN 72.751 1 69.123 68.623 69.623 -3.6275 0 0 0 0.21486 1 13743 13743 10.183 7.2942 1 3142 3549 1767 1769 3517 3517 0.056033013570868206 ALGTIWYEL 9 Unmodified _ALGTIWYEL_ 0 0 0 ENSG00000171435|ENST00000339824|KSR2 ENSG00000171435|ENST00000339824|KSR2 ENSG00000171435|ENST00000339824|KSR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2650756835938 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 130.55 1 125.78 125.28 126.28 -4.7725 0 0 0 0.21848 1 25127 25127 18.135 1.1927 1 3143 6143 1768 1770 3518 3518 0.024552247287601858 ALGTVTNV 8 Unmodified _ALGTVTNV_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7214050292969 2 387.721436 773.428318 -0.42911 -0.00016638 0.57334 0.0002223 0.14423 5.5921E-05 387.72155409995565 67.776 0.59303 67.776 67.514 68.107 0 27 16 2 0 0 0 8448 1 13104 13104 28.46 16.461 1 2117700 3144 2678 1769 1771 3519 3519 0.03254137943326896 ALGTVTNV 8 Unmodified _ALGTVTNV_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7212829589844 2 387.721436 773.428318 -0.33443 -0.00012967 0.48854 0.00018942 0.15412 5.9754E-05 387.72155848929964 70.926 0.67206 67.677 67.285 67.957 -3.2492 30 18 2 0 0 0 0.3584 3 13797 13796;13797;13837 34.187 22.268 1 2917400 3145 2678 1769 1771 3520;3521;3522 3521 0.03254137943326896 ALGTVTNV 8 Unmodified _ALGTVTNV_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7214050292969 2 387.721436 773.428318 0.32393 0.00012559 -0.093772 -3.6358E-05 0.23015 8.9236E-05 387.7213164566901 71.352 0.56721 67.772 67.47 68.037 -3.5798 31 15 3 0 0 0 0.18731 2 13454 13453;13454 46.921 23.983 1 1802400 3146 2678 1769 1771 3523;3524 3524 0.03254137943326896 ALGTVTNV 8 Unmodified _ALGTVTNV_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.721435546875 2 387.721436 773.428318 -0.28554 -0.00011071 0.39557 0.00015337 0.11003 4.2662E-05 387.7215406669897 71.24 0.70171 67.773 67.486 68.187 -3.467 33 19 2 0 0 0 8448 1 13511 13511 28.46 16.461 1 1703700 3147 2678 1769 1771 3525 3525 0.03254137943326896 ALHDILTEI 9 Unmodified _ALHDILTEI_ 0 0 0 nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5 nc|ENSG00000111445|P40937-2|RFC5 nc|ENSG00000111445|P40937-2|RFC5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 513.8073120117188 2 512.787307 1023.56006 0.40368 0.000207 -0.29761 -0.00015261 0.10607 5.4393E-05 512.7871164186263 159.16 1.1516 153.89 153.33 154.48 -5.2712 96 31 4 0 0 0 0.064056 1 30910 30910 97.138 74.517 1 51824000 3148 2621 1770 1772 3526 3526 0.04922323240418791 ALHDILTEI 9 Unmodified _ALHDILTEI_ 0 0 0 nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5 nc|ENSG00000111445|P40937-2|RFC5 nc|ENSG00000111445|P40937-2|RFC5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 512.787307 1023.56006 -0.31819 -0.00016317 0.40493 0.00020764 0.08674 4.4479E-05 512.7874762748967 159.15 1.0725 153.88 153.4 154.47 -5.2748 -0.077372 0.00046704 NaN 97.138 88 29 4 NaN NaN NaN NaN 0 NaN NaN 0 51158000 3149 2621 1770 1772 0.04922323240418791 ALHDILTEI 9 Unmodified _ALHDILTEI_ 0 0 0 nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5 nc|ENSG00000111445|P40937-2|RFC5 nc|ENSG00000111445|P40937-2|RFC5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 512.787307 1023.56006 0.40368 0.000207 -0.29761 -0.00015261 0.10607 5.4393E-05 512.7871164186263 159.16 1.1516 153.89 153.33 154.48 -5.2712 -0.065233 -0.00025347 NaN 97.138 96 31 4 NaN NaN NaN NaN 0 NaN NaN 0 51824000 3150 2621 1770 1772 0.04922323240418791 ALHIKFEK 8 Unmodified _ALHIKFEK_ 0 0 0 REV__ENSG00000221886|ENST00000408953|FAM200C REV__ENSG00000221886|ENST00000408953|FAM200C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 493.5124816894531 2 493.295102 984.575651 NaN NaN NaN NaN NaN NaN NaN 136.54 1 136.54 136.04 137.04 0 0 0 0 0.21486 1 27059 27059 11.114 1.767 1 + 3151 19709 1771 1773 3527 3527 0.08274654548131366 ALHISHIIDQY 11 Unmodified _ALHISHIIDQY_ 0 0 0 REV__BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant REV__BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2281799316406 3 437.234822 1308.68264 NaN NaN NaN NaN NaN NaN NaN 63.025 1 63.025 62.525 63.525 0 0 0 0 0.22632 1 12110 12110 0.026206 0.024825 1 + 3152 13181 1772 1774 3528 3528 0.040641599718583166 ALHPSHPD 8 Unmodified _ALHPSHPD_ 0 0 0 nc|ENSG00000152910|Q9C0A0-2|CNTNAP4;ENSG00000152910|ENST00000611870|CNTNAP4 nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21502685546875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 86.783 1 82.832 82.332 83.332 -3.9503 0 0 0 0.21486 1 16524 16524 5.7604 0 1 3153 4945 1773 1775 3529 3529 -0.027245144849530334 ALHQHLNS 8 Unmodified _ALHQHLNS_ 0 0 0 REV__ENSG00000215421|ENST00000299687|ZNF407 REV__ENSG00000215421|ENST00000299687|ZNF407 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23974609375 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 69.338 1 66.159 65.659 66.659 -3.1796 0 0 0 0.22692 1 13481 13481 0.25148 0.18749 1 + 3154 19688 1774 1776 3530 3530 0.0046686329772001045 ALHSRARGP 9 Unmodified _ALHSRARGP_ 0 0 0 ENST00000318596.7_1_19:19222348-19222501:+|nuORF ENST00000318596.7_1_19:19222348-19222501:+|nuORF ENST00000318596.7_1_19:19222348-19222501:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.1705322265625 3 322.186025 963.536246 NaN NaN NaN NaN NaN NaN NaN 18.634 1 17.323 16.823 17.823 -1.3109 0 0 0 0.23508 1 3037 3037 1.1933 0.41681 1 3155 8693 1775 1777 3531 3531 0.05301947317275335 ALHYTIPGGD 10 Unmodified _ALHYTIPGGD_ 0 0 0 REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2821655273438 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 77.04 1 73.274 72.774 73.774 -3.7664 0 0 0 0.22588 1 14594 14594 6.7232 0.36906 1 + 3156 13642 1776 1778 3532 3532 -0.011194204534604069 ALIDRMVNL 9 Unmodified _ALIDRMVNL_ 0 0 0 ENSG00000175197|ENST00000346473|DDIT3;nc|ENSG00000285133|P35638-2|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2783813476562 2 522.797152 1043.57975 0.19598 0.00010246 -0.36081 -0.00018863 -0.16483 -8.6174E-05 522.7970685358811 142.83 0.83583 142.83 142.37 143.21 0 50 23 3 0 0 0 0.032798 1 28492 28492 96.367 14.476 1 14279000 3157 6392 1777 1779 3533 3533 0.059703759795411315 ALIDRMVNL 9 Unmodified _ALIDRMVNL_ 0 0 0 ENSG00000175197|ENST00000346473|DDIT3;nc|ENSG00000285133|P35638-2|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2566528320312 2 522.797152 1043.57975 -0.11405 -5.9623E-05 -0.29448 -0.00015396 -0.40853 -0.00021358 522.7971574594918 147.26 0.79524 142.57 142.16 142.95 -4.6868 47 22 3 0 0 0 0.00090544 1 29216 29216 142.08 53.176 1 18907000 3158 6392 1777 1779 3534 3534 0.059703759795411315 ALIDRMVNL 9 Unmodified _ALIDRMVNL_ 0 0 0 ENSG00000175197|ENST00000346473|DDIT3;nc|ENSG00000285133|P35638-2|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2584228515625 2 522.797152 1043.57975 -0.51768 -0.00027064 0.50572 0.00026439 -0.011965 -6.2552E-06 522.7973666584625 147.81 0.85161 142.65 142.23 143.08 -5.1557 50 23 4 0 0 0 0.029993 1 28586 28586 106.94 28.791 1 12165000 3159 6392 1777 1779 3535 3535 0.059703759795411315 ALIDRMVNL 9 Unmodified _ALIDRMVNL_ 0 0 0 ENSG00000175197|ENST00000346473|DDIT3;nc|ENSG00000285133|P35638-2|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2767333984375 2 522.797152 1043.57975 0.38077 0.00019907 1.042 0.00054474 1.4228 0.00074381 522.797042331791 147.66 1.1133 142.6 141.83 142.94 -5.0595 46 31 2 0 0 0 0.032798 1 28610 28610 96.367 25.651 1 9762900 3160 6392 1777 1779 3536 3536 0.059703759795411315 ALIGHAWVL 9 Unmodified _ALIGHAWVL_ 0 0 0 REV__ENST00000356384.4_1_9:137263923-137265910:+|nuORF REV__ENST00000356384.4_1_9:137263923-137265910:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2715148925781 2 490.28982 978.565087 NaN NaN NaN NaN NaN NaN NaN 127.1 1 127.1 126.6 127.6 0 0 0 0 0.19697 1 25086 25086 0.12781 0 1 + 3161 20810 1778 1780 3537 3537 0.07494671893698523 ALIKKKKKT 9 Unmodified _ALIKKKKKT_ 0 0 0 ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant;ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant;ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.24163818359375 3 353.253376 1056.7383 NaN NaN NaN NaN NaN NaN NaN 30.059 1 27.985 27.485 28.485 -2.0743 0 0 0 0.23508 1 5131 5131 0.26902 0.26902 1 3162 23 1779 1781 3538 3538 0.2122003795011551 ALISKKFV 8 Unmodified _ALISKKFV_ 0 0 0 REV__ENSG00000214943|ENST00000399285|GPR33 REV__ENSG00000214943|ENST00000399285|GPR33 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75811767578125 2 453.294571 904.574589 0.24917 0.00011295 0.17628 7.9905E-05 0.42544 0.00019285 453.2945866305199 102.46 0.9315 98.14 97.673 98.604 -4.3208 54 26 3 0 0 0 0.87562 1 19591 19591 0.62683 0.21856 1 2528700 + 3163 19678 1780 1782 3539 3539 0.11848440179232966 ALKCLREV 8 Unmodified _ALKCLREV_ 0 0 0 REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.221435546875 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 84.103 1 80.392 79.892 80.892 -3.7117 0 0 0 0.21486 1 16062 16062 1.6526 0 1 + 3164 14755 1781 1783 3540 3540 0.06402721779352305 ALKGNWGDSRR 11 Unmodified _ALKGNWGDSRR_ 0 0 0 REV__nc|ENSG00000162390|Q8WXI4|ACOT11 REV__nc|ENSG00000162390|Q8WXI4|ACOT11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7780151367188 2 630.33381 1258.65307 NaN NaN NaN NaN NaN NaN NaN 46.588 1 46.588 46.088 47.088 0 0 0 0 0.22683 1 8777 8777 10.8 0.72558 1 + 3165 24125 1782 1784 3541 3541 0.03408640746351921 ALKLAETGH 9 Unmodified _ALKLAETGH_ 0 0 0 tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1 tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1 tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.19635009765625 3 313.846787 938.51853 -0.23883 -7.4955E-05 0.6886 0.00021612 0.44977 0.00014116 313.84688249804003 32.566 0.35105 30.417 30.171 30.522 -2.1483 15 9 2 0 0 0 0.61771 1 5620 5620 0.073264 0.0092761 1 267700 3166 25887 1783 1785 3542 3542 0.04681187271773979 ALKLAETGH 9 Unmodified _ALKLAETGH_ 0 0 0 tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1 tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1 tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 313.846787 938.51853 0.26141 8.2041E-05 -0.33073 -0.0001038 -0.069327 -2.1758E-05 313.8466336866779 32.387 0.32103 30.361 30.251 30.572 -2.0264 -0.028151 -0.00047393 NaN 0.073264 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 333810 3167 25887 1783 1785 0.04681187271773979 ALKQKRRRRKK 11 Unmodified _ALKQKRRRRKK_ 0 0 0 REV__ENSG00000126705|ENST00000673934|AHDC1 REV__ENSG00000126705|ENST00000673934|AHDC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.266357421875 3 489.998815 1466.97462 NaN NaN NaN NaN NaN NaN NaN 39.98 1 37.44 36.94 37.94 -2.5398 0 0 0 0.23698 1 7152 7152 0.094841 0.011491 1 + 3168 15861 1784 1786 3543 3543 0.2598078256712597 ALKRKKFK 8 Unmodified _ALKRKKFK_ 0 0 0 ENSG00000087269|ENST00000416614|NOP14 ENSG00000087269|ENST00000416614|NOP14 ENSG00000087269|ENST00000416614|NOP14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 509.7478942871094 2 509.847836 1017.68112 NaN NaN NaN NaN NaN NaN NaN 143.58 1 143.58 143.08 144.08 0 0 0 0 0.23711 1 28656 28656 0.0082765 0 1 3169 1713 1785 1787 3544 3544 0.1729861546441498 ALKRKKRF 8 Unmodified _ALKRKKRF_ 0 0 0 ENSG00000164695|ENST00000297265|CHMP4C ENSG00000164695|ENST00000297265|CHMP4C ENSG00000164695|ENST00000297265|CHMP4C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6947631835938 2 523.85091 1045.68727 NaN NaN NaN NaN NaN NaN NaN 150.93 1 145.76 145.26 146.26 -5.1759 0 0 0 0.21486 1 29256 29256 2.5775 1.976 1 3170 5564 1786 1788 3545 3545 0.16625133695947625 ALKRLKMVK 9 Unmodified _ALKRLKMVK_ 0 0 0 REV__nc|ENSG00000080561|Q9UJV3-2|MID2 REV__nc|ENSG00000080561|Q9UJV3-2|MID2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.784912109375 2 543.862629 1085.71071 NaN NaN NaN NaN NaN NaN NaN 160.22 1 160.22 159.72 160.72 0 0 0 0 0.1963 1 32172 32172 0.073264 0.043981 1 + 3171 14411 1787 1789 3546 3546 0.17127811418254169 ALKRSFKSQ 9 Unmodified _ALKRSFKSQ_ 0 0 0 ENSG00000180043|ENST00000424985|GARIN5B ENSG00000180043|ENST00000424985|GARIN5B ENSG00000180043|ENST00000424985|GARIN5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2750244140625 2 532.81419 1063.61383 -0.061944 -3.3005E-05 0.80713 0.00043005 0.74519 0.00039705 533.3165512115951 70.996 0.8617 70.996 70.521 71.382 0 32 24 2 0 0 0 0.35556 1 13808 13808 12.241 4.0851 1 2678100 3172 6655 1788 1790 3547 3547 0.0845654046281652 ALKTQKTSER 10 Unmodified _ALKTQKTSER_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7266845703125 3 387.891055 1160.65134 -0.1948 -7.556E-05 0.57819 0.00022428 0.38339 0.00014872 387.89086821479845 15.471 1.0413 15.471 14.667 15.708 0 46 29 3 0 0 0 0.91149 1 2203 2203 0.56317 0 1 521990 3173 5053 1789 1791 3548 3548 0.07743586937749569 ALKYLFHLSS 10 Unmodified _ALKYLFHLSS_ 0 0 0 REV__ENSG00000215193|ENST00000399744|PEX26 REV__ENSG00000215193|ENST00000399744|PEX26 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2642822265625 2 589.832049 1177.64954 NaN NaN NaN NaN NaN NaN NaN 45.343 1 42.553 42.053 43.053 -2.79 0 0 0 0.22588 1 8537 8537 6.7232 1.9672 1 + 3174 19684 1790 1792 3549 3549 0.06782577919807409 ALLDRVDKY 9 Unmodified _ALLDRVDKY_ 0 0 0 REV__ENST00000461731.5_1_2:220094544-220099084:+|nuORF REV__ENST00000461731.5_1_2:220094544-220099084:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7891235351562 2 546.806031 1091.59751 -0.13167 -7.1998E-05 0.37035 0.00020251 0.23868 0.00013051 546.8061014281504 106.03 0.70092 101.76 101.41 102.11 -4.2638 44 19 3 0 0 0 0.2219 1 20845 20845 36.127 8.4982 1 4708500 + 3175 17579 1791 1793 3550 3550 0.05537414506034111 ALLDRVDKY 9 Unmodified _ALLDRVDKY_ 0 0 0 REV__ENST00000461731.5_1_2:220094544-220099084:+|nuORF REV__ENST00000461731.5_1_2:220094544-220099084:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.806031 1091.59751 0.75162 0.00041099 -0.54876 -0.00030006 0.20286 0.00011093 546.8055226948285 101.99 0.59776 101.99 101.71 102.3 0 0.10927 -0.00041929 NaN 36.127 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3677100 + 3176 17579 1791 1793 0.05537414506034111 ALLDRVDKY 9 Unmodified _ALLDRVDKY_ 0 0 0 REV__ENST00000461731.5_1_2:220094544-220099084:+|nuORF REV__ENST00000461731.5_1_2:220094544-220099084:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.806031 1091.59751 -0.13167 -7.1998E-05 0.37035 0.00020251 0.23868 0.00013051 546.8061014281504 106.03 0.70092 101.76 101.41 102.11 -4.2638 -0.11146 0.00058586 NaN 36.127 44 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4708500 + 3177 17579 1791 1793 0.05537414506034111 ALLDRVDKY 9 Unmodified _ALLDRVDKY_ 0 0 0 REV__ENST00000461731.5_1_2:220094544-220099084:+|nuORF REV__ENST00000461731.5_1_2:220094544-220099084:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.806031 1091.59751 0.065108 3.5601E-05 0.022898 1.2521E-05 0.088005 4.8122E-05 546.8060704067157 106.28 0.72765 101.9 101.47 102.2 -4.3764 0.028546 0.00020588 NaN 36.127 42 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4196300 + 3178 17579 1791 1793 0.05537414506034111 ALLDRVDKY 9 Unmodified _ALLDRVDKY_ 0 0 0 REV__ENST00000461731.5_1_2:220094544-220099084:+|nuORF REV__ENST00000461731.5_1_2:220094544-220099084:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.806031 1091.59751 0.81203 0.00044402 -0.75281 -0.00041164 0.059215 3.2379E-05 546.8056103758922 105.94 0.62583 101.85 101.53 102.16 -4.0913 -0.026354 -0.00064244 NaN 36.127 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4916700 + 3179 17579 1791 1793 0.05537414506034111 ALLDYREDGV 10 Unmodified _ALLDYREDGV_ 0 0 0 ENSG00000133112|ENST00000530705|TPT1;nc|ENSG00000133112|P13693-2|TPT1;ENST00000403538.1_1_6:144521586-144521685:-|nuORF ENSG00000133112|ENST00000530705|TPT1 ENSG00000133112|ENST00000530705|TPT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3157958984375 2 575.790578 1149.5666 0.76232 0.00043894 -0.22298 -0.00012839 0.53934 0.00031055 575.790409965031 104.72 0.48823 100.67 100.45 100.94 -4.0543 23 13 2 0 0 0 0.57807 1 20116 20116 20.415 6.5085 1 1474000 3180 3785 1792 1794 3551 3551 -0.002197835988681618 ALLDYREDGV 10 Unmodified _ALLDYREDGV_ 0 0 0 ENSG00000133112|ENST00000530705|TPT1;nc|ENSG00000133112|P13693-2|TPT1;ENST00000403538.1_1_6:144521586-144521685:-|nuORF ENSG00000133112|ENST00000530705|TPT1 ENSG00000133112|ENST00000530705|TPT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 575.790578 1149.5666 -0.23093 -0.00013297 0.6507 0.00037467 0.41976 0.0002417 575.7910469389129 104.85 0.56092 100.63 100.33 100.9 -4.2183 -0.039074 0.00059914 NaN 20.415 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2514300 3181 3785 1792 1794 -0.002197835988681618 ALLDYREDGV 10 Unmodified _ALLDYREDGV_ 0 0 0 ENSG00000133112|ENST00000530705|TPT1;nc|ENSG00000133112|P13693-2|TPT1;ENST00000403538.1_1_6:144521586-144521685:-|nuORF ENSG00000133112|ENST00000530705|TPT1 ENSG00000133112|ENST00000530705|TPT1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 575.790578 1149.5666 0.21714 0.00012502 0.27468 0.00015816 0.49182 0.00028318 575.7907544451408 105.11 0.44685 100.74 100.39 100.84 -4.3764 0.064156 0.00016613 NaN 20.415 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1545800 3182 3785 1792 1794 -0.002197835988681618 ALLESSLRQA 10 Unmodified _ALLESSLRQA_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7713012695312 2 544.308938 1086.60332 0.73996 0.00040277 -0.80339 -0.00043729 -0.063429 -3.4525E-05 544.3084792821936 80.099 0.69469 80.099 79.793 80.487 0 48 19 3 0 0 0 0.23693 1 15608 15608 59.368 17.529 1 5365700 3183 2564 1793 1795 3552 3552 0.06348513017701407 ALLESSLRQA 10 Unmodified _ALLESSLRQA_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7776489257812 2 544.308938 1086.60332 0.19852 0.00010805 -0.27426 -0.00014928 -0.075744 -4.1228E-05 544.3088372158278 83.551 0.74078 79.943 79.582 80.323 -3.6079 54 20 3 0 0 0 0.21204 1 16314 16314 72.968 25.374 1 7290800 3184 2564 1793 1795 3553 3553 0.06348513017701407 ALLESSLRQA 10 Unmodified _ALLESSLRQA_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7926635742188 2 544.308938 1086.60332 0.16122 8.7755E-05 0.038384 2.0893E-05 0.19961 0.00010865 544.309002971923 83.907 0.78069 79.998 79.642 80.423 -3.9093 52 21 3 0 0 0 0.092008 1 15947 15947 90.135 36.302 1 6001900 3185 2564 1793 1795 3554 3554 0.06348513017701407 ALLESSLRQA 10 Unmodified _ALLESSLRQA_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7728881835938 2 544.308938 1086.60332 0.024821 1.3511E-05 0.17138 9.3285E-05 0.1962 0.0001068 544.3089518902959 83.706 0.8079 80.008 79.621 80.429 -3.6985 55 22 4 0 0 0 0.053444 1 15963 15963 100.09 41.412 1 8305300 3186 2564 1793 1795 3555 3555 0.06348513017701407 ALLGRLREV 9 Unmodified _ALLGRLREV_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;nc|ENSG00000141556|Q9BTW9-5|TBCD ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.2154235839844 3 342.885464 1025.63456 0.28009 9.6039E-05 -0.45917 -0.00015744 -0.17908 -6.1404E-05 342.8852614438713 92.231 0.62436 88.137 87.808 88.433 -4.0946 31 17 2 0 0 0 0.058839 1 17583 17583 67.838 30.764 1 4318600 3187 4383 1794 1796 3556 3556 0.12277130842448969 ALLGRLREV 9 Unmodified _ALLGRLREV_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;nc|ENSG00000141556|Q9BTW9-5|TBCD ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 342.885464 1025.63456 -0.4636 -0.00015896 0.26868 9.2127E-05 -0.19492 -6.6836E-05 342.8855377009826 88.456 0.56337 88.456 88.19 88.754 0 0.21275 0.00019022 NaN 67.838 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 5590300 3188 4383 1794 1796 0.12277130842448969 ALLGRLREV 9 Unmodified _ALLGRLREV_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;nc|ENSG00000141556|Q9BTW9-5|TBCD ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 342.885464 1025.63456 -0.30486 -0.00010453 0.17594 6.0326E-05 -0.12892 -4.4206E-05 342.8854910058525 92.114 0.58865 88.189 87.857 88.446 -3.9251 -0.054411 9.4816E-05 NaN 67.838 38 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4819400 3189 4383 1794 1796 0.12277130842448969 ALLGRLREV 9 Unmodified _ALLGRLREV_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;nc|ENSG00000141556|Q9BTW9-5|TBCD ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.885464 1025.63456 -0.57849 -0.00019836 0.32637 0.00011191 -0.25212 -8.6447E-05 342.8855428852548 92 0.61639 88.192 87.896 88.512 -3.8083 -0.051439 0.00024956 NaN 67.838 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4741300 3190 4383 1794 1796 0.12277130842448969 ALLHEIQEI 9 Unmodified _ALLHEIQEI_ 0 0 0 nc|ENSG00000172765|O94876-2|TMCC1;ENSG00000172765|ENST00000393238|TMCC1 nc|ENSG00000172765|O94876-2|TMCC1 nc|ENSG00000172765|O94876-2|TMCC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2627563476562 2 533.300581 1064.58661 0.11627 6.2006E-05 -1.1796 -0.00062908 -1.0633 -0.00056707 533.2995721089311 128.87 0.45505 124.24 123.87 124.33 -4.6292 16 12 2 0 0 0 0.1793 2 25395 25373;25395 39.957 9.7325 1 1689300 3191 6238 1795 1797 3557;3558 3558 0.05690012131753974 ALLHEIQEI 9 Unmodified _ALLHEIQEI_ 0 0 0 nc|ENSG00000172765|O94876-2|TMCC1;ENSG00000172765|ENST00000393238|TMCC1 nc|ENSG00000172765|O94876-2|TMCC1 nc|ENSG00000172765|O94876-2|TMCC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2730712890625 2 533.300581 1064.58661 0.48058 0.00025629 -1.3054 -0.00069619 -0.82486 -0.0004399 533.2994401162443 129.12 0.52808 124.3 123.88 124.4 -4.817 22 14 2 0 0 0 0.42289 1 24739 24739 39.957 19.086 1 1976700 3192 6238 1795 1797 3559 3559 0.05690012131753974 ALLHELPHP 9 Unmodified _ALLHELPHP_ 0 0 0 REV__nc|ENSG00000184224|Q8NBR9|NDUFV1-DT REV__nc|ENSG00000184224|Q8NBR9|NDUFV1-DT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.15386962890625 3 342.862548 1025.56581 -0.58385 -0.00020018 0.34839 0.00011945 -0.23546 -8.0731E-05 342.86259886918003 93.232 3.8582 93.232 91.009 94.867 0 234 110 3 0 0 0 0.54058 1 17978 17978 8.1555 0 1 5356800 + 3193 24205 1796 1798 3560 3560 0.05405466542742943 ALLHELPHP 9 Unmodified _ALLHELPHP_ 0 0 0 REV__nc|ENSG00000184224|Q8NBR9|NDUFV1-DT REV__nc|ENSG00000184224|Q8NBR9|NDUFV1-DT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.862548 1025.56581 -0.70118 -0.00024041 0.59208 0.000203 -0.1091 -3.7405E-05 342.8626836420275 96.925 4.1766 93.005 90.426 94.603 -3.9194 -0.11314 0.00011408 NaN 8.1555 275 120 3 NaN NaN NaN NaN 0 NaN NaN 0 6860700 + 3194 24205 1796 1798 0.05405466542742943 ALLKFSSHRA 10 Unmodified _ALLKFSSHRA_ 0 0 0 nc|ENSG00000256453|Q8IYX4|DND1 nc|ENSG00000256453|Q8IYX4|DND1 nc|ENSG00000256453|Q8IYX4|DND1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.88616943359375 3 377.220735 1128.64038 -0.34289 -0.00012934 0.078057 2.9445E-05 -0.26483 -9.9899E-05 377.2209092269024 43.062 0.49229 40.343 39.951 40.444 -2.7191 30 13 3 0 0 0 0.36162 1 8079 8079 14.405 2.1647 1 2202200 3195 12630 1797 1799 3561 3561 0.0812022935413097 ALLKFSSHRA 10 Unmodified _ALLKFSSHRA_ 0 0 0 nc|ENSG00000256453|Q8IYX4|DND1 nc|ENSG00000256453|Q8IYX4|DND1 nc|ENSG00000256453|Q8IYX4|DND1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 377.220735 1128.64038 0.0049506 1.8675E-06 -0.43048 -0.00016239 -0.42553 -0.00016052 377.2204692775258 40.229 0.56895 40.229 39.93 40.499 0 -0.078072 -0.00060884 NaN 14.405 27 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1777800 3196 12630 1797 1799 0.0812022935413097 ALLKFSSHRA 10 Unmodified _ALLKFSSHRA_ 0 0 0 nc|ENSG00000256453|Q8IYX4|DND1 nc|ENSG00000256453|Q8IYX4|DND1 nc|ENSG00000256453|Q8IYX4|DND1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 377.220735 1128.64038 -0.049205 -1.8561E-05 -0.042148 -1.5899E-05 -0.091352 -3.446E-05 377.2208000633053 42.947 0.48678 40.296 40.093 40.58 -2.651 -0.011032 -0.00016937 NaN 14.405 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2070400 3197 12630 1797 1799 0.0812022935413097 ALLKFSSHRA 10 Unmodified _ALLKFSSHRA_ 0 0 0 nc|ENSG00000256453|Q8IYX4|DND1 nc|ENSG00000256453|Q8IYX4|DND1 nc|ENSG00000256453|Q8IYX4|DND1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 377.220735 1128.64038 -0.69998 -0.00026405 0.64259 0.0002424 -0.057383 -2.1646E-05 377.5554119468461 42.967 0.5542 40.361 40.004 40.558 -2.606 0.053896 0.00060552 NaN 14.405 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1702400 3198 12630 1797 1799 0.0812022935413097 ALLKLLKYI 9 Unmodified _ALLKLLKYI_ 0 0 0 ENSG00000140471|ENST00000314742|LINS1;ENST00000559169.1_1_15:101109445-101112292:-|nuORF ENSG00000140471|ENST00000314742|LINS1 ENSG00000140471|ENST00000314742|LINS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 538.2887573242188 2 537.867903 1073.72125 0.21841 0.00011748 -2.5697 -0.0013821 -2.3512 -0.0012647 537.864843061302 134.27 0.23849 134.27 134.08 134.31 0 10 6 2 0 0 0 0.63929 1 26567 26567 0 0 1 2531800 3199 4303 1798 1800 3562 3562 0.18734117344320111 ALLNQHYQV 9 Unmodified _ALLNQHYQV_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79248046875 2 543.290548 1084.56654 0.23876 0.00012972 0.19139 0.00010398 0.43015 0.0002337 543.2907427752925 88.071 0.58402 88.071 87.743 88.327 0 38 16 3 0 0 0 0.01604 2 17175 17175;17219 96.285 42.709 1 3872900 3200 4024 1799 1801 3563;3564 3563 0.027642611918054172 ALLNQHYQV 9 Unmodified _ALLNQHYQV_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7921752929688 2 543.290548 1084.56654 0.19259 0.00010463 0.49984 0.00027156 0.69243 0.00037619 543.2906965847804 91.934 0.65056 88.009 87.652 88.303 -3.9251 44 18 4 0 0 0 0.0038583 3 18009 17965;17996;18009 115.69 68.098 1 4295400 3201 4024 1799 1801 3565;3566;3567 3567 0.027642611918054172 ALLNQHYQV 9 Unmodified _ALLNQHYQV_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7699584960938 2 543.290548 1084.56654 0.30215 0.00016416 0.31818 0.00017286 0.62033 0.00033702 543.2906879259695 92.12 0.69775 88.025 87.633 88.33 -4.0946 40 19 3 0 0 0 0.01604 3 17554 17521;17554;17574 96.285 51.878 1 3028900 3202 4024 1799 1801 3568;3569;3570 3569 0.027642611918054172 ALLNQHYQV 9 Unmodified _ALLNQHYQV_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7703857421875 2 543.290548 1084.56654 0.20189 0.00010969 0.43878 0.00023838 0.64067 0.00034807 543.2907542127173 91.801 0.69588 87.993 87.616 88.312 -3.8083 32 19 2 0 0 0 0.011913 3 17589 17545;17589;17593 100.37 55.964 1 3335400 3203 4024 1799 1801 3571;3572;3573 3572 0.027642611918054172 ALLPELREV 9 Unmodified _ALLPELREV_ 0 0 0 ENSG00000170175|ENST00000306071|CHRNB1;nc|ENSG00000170175|P11230-2|CHRNB1 ENSG00000170175|ENST00000306071|CHRNB1 ENSG00000170175|ENST00000306071|CHRNB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 520.801513671875 2 520.310949 1038.60735 -0.56942 -0.00029628 0.95277 0.00049573 0.38335 0.00019946 520.3113329292248 148.56 1.1212 143.4 142.87 143.99 -5.1557 75 31 3 0 0 0 0.27464 1 28741 28741 51.415 26.534 1 13931000 3204 6045 1800 1802 3574 3574 0.08958602511415847 ALLQSDVRL 9 Unmodified _ALLQSDVRL_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.E574Gfs*11|1|0.22|ENSG00000178209|chr8:143933305-143933306|-/C|frameshift_variant nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 508.80267333984375 2 507.800749 1013.58694 0.23894 0.00012133 0.6592 0.00033474 0.89813 0.00045607 507.8007100808485 120.13 1.1517 115.48 115.13 116.28 -4.645 63 32 3 0 0 0 0.24122 1 23094 23094 24.882 7.3097 1 6099200 3205 6567 1801 1803 3575 3575 0.08069431851606623 ALLQSDVRL 9 Unmodified _ALLQSDVRL_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.E574Gfs*11|1|0.22|ENSG00000178209|chr8:143933305-143933306|-/C|frameshift_variant nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 507.800749 1013.58694 0.1885 9.5723E-05 0.19073 9.6852E-05 0.37923 0.00019257 507.8006099101715 115.85 0.94444 115.85 115.55 116.5 0 0.26979 -0.00036615 NaN 24.882 44 26 2 NaN NaN NaN NaN 0 NaN NaN 0 9191400 3206 6567 1801 1803 0.08069431851606623 ALLQSDVRL 9 Unmodified _ALLQSDVRL_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.E574Gfs*11|1|0.22|ENSG00000178209|chr8:143933305-143933306|-/C|frameshift_variant nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 507.800749 1013.58694 0.19495 9.8998E-05 0.86989 0.00044173 1.0648 0.00054073 507.80065716359223 119.98 0.90238 115.46 115.15 116.06 -4.5221 -0.12361 0.0003236 NaN 24.882 64 25 3 NaN NaN NaN NaN 0 NaN NaN 0 6259300 3207 6567 1801 1803 0.08069431851606623 ALLQSDVRL 9 Unmodified _ALLQSDVRL_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.E574Gfs*11|1|0.22|ENSG00000178209|chr8:143933305-143933306|-/C|frameshift_variant nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 507.800749 1013.58694 0.2992 0.00015193 0.74888 0.00038028 1.0481 0.00053221 507.8006899893592 120.01 1.0464 115.54 115.19 116.24 -4.467 -0.044979 0.0002007 NaN 24.882 65 29 3 NaN NaN NaN NaN 0 NaN NaN 0 6807300 3208 6567 1801 1803 0.08069431851606623 ALLRCWCC 8 Unmodified _ALLRCWCC_ 0 0 0 REV__ALCAM|p.G535Wfs*33|1|0.3|ENSG00000170017|chr3:105552521-105552522|-/T|frameshift_variant REV__ALCAM|p.G535Wfs*33|1|0.3|ENSG00000170017|chr3:105552521-105552522|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.168212890625 3 323.148538 966.423784 NaN NaN NaN NaN NaN NaN NaN 81.341 1 81.341 80.841 81.841 0 0 0 0 0.21486 1 15841 15841 0.45834 0 1 + 3209 13003 1802 1804 3576 3576 -0.06077109067098263 ALLSAVTRL 9 Unmodified _ALLSAVTRL_ 0 0 0 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant;CTNNA2|p.E411Kfs*4|1|0.19|ENSG00000066032|chr2:80419542-80419542|G/-|frameshift_variant;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 472.6050109863281 2 472.300384 942.586216 NaN NaN NaN NaN NaN NaN NaN 143.24 1 138.22 137.72 138.72 -5.0261 0 0 0 0.17796 1 27616 27616 19.626 10.082 1 3210 742 1803 1805 3577 3577 0.112626372025602 ALLSAVTRL 9 Unmodified _ALLSAVTRL_ 0 0 0 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant;CTNNA2|p.E411Kfs*4|1|0.19|ENSG00000066032|chr2:80419542-80419542|G/-|frameshift_variant;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 472.6034240722656 2 472.300384 942.586216 0.29779 0.00014065 -0.53411 -0.00025226 -0.23632 -0.00011161 472.3001031164222 143.28 0.59039 138.39 138.09 138.68 -4.8982 21 16 2 0 0 0 0.25976 1 27644 27644 30.703 12.33 1 1057500 3211 742 1803 1805 3578 3578 0.112626372025602 ALLSGLREA 9 Unmodified _ALLSGLREA_ 0 0 0 nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A nc|ENSG00000004487|O60341|KDM1A nc|ENSG00000004487|O60341|KDM1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.23956298828125 2 465.274367 928.53418 -0.11071 -5.1508E-05 0.16766 7.8009E-05 0.056957 2.65E-05 465.27444176892755 93.741 0.87897 93.741 93.16 94.039 0 43 24 2 0 0 0 0.34246 1 18303 18303 47.594 3.7361 1 2792800 3212 974 1804 1806 3579 3579 0.06705473788792915 ALLSGLREA 9 Unmodified _ALLSGLREA_ 0 0 0 nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A nc|ENSG00000004487|O60341|KDM1A nc|ENSG00000004487|O60341|KDM1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2490539550781 2 465.274367 928.53418 -0.022735 -1.0578E-05 0.082782 3.8516E-05 0.060047 2.7938E-05 465.27434736568927 97.196 0.73302 93.098 92.839 93.572 -4.0978 32 20 2 0 0 0 0.080602 1 19073 19073 80.676 9.9605 1 4625200 3213 974 1804 1806 3580 3580 0.06705473788792915 ALLSLYHY 8 Unmodified _ALLSLYHY_ 0 0 0 REV__ENST00000503063.5_1_17:48628810-48629053:+|nuORF REV__ENST00000503063.5_1_17:48628810-48629053:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2641906738281 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 65.07 1 61.612 61.112 62.112 -3.4581 0 0 0 0.21022 1 12171 12171 17.087 0 1 + 3214 22449 1805 1807 3581 3581 0.02734972902840127 ALLVVHAVDQD 11 Unmodified _ALLVVHAVDQD_ 0 0 0 nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3;MTMR3|p.S466Ifs*6|1|0.03|ENSG00000100330|chr22:30013433-30013434|-/ATTTG|frameshift_variant;MTMR3|p.L605*|2|0.34|ENSG00000100330|chr22:30018059-30018059|C/-|frameshift_variant nc|ENSG00000100330|Q13615-3|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2553100585938 2 590.322045 1178.62954 NaN NaN NaN NaN NaN NaN NaN 162.48 1 157.69 157.19 158.19 -4.7898 0 0 0 0.16602 1 32332 32332 0.65807 0.14166 1 3215 1954 1806 1808 3582 3582 0.04736782189161204 ALLWSAGVL 9 Unmodified _ALLWSAGVL_ 0 0 0 REV__ENSG00000186115|ENST00000221700|CYP4F2;REV__ENSG00000186529|ENST00000221307|CYP4F3 REV__ENSG00000186115|ENST00000221700|CYP4F2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2488708496094 2 465.276378 928.538203 -0.013639 -6.3459E-06 -1.0387 -0.00048329 -1.0524 -0.00048964 465.27437493572626 97.081 0.7909 93.162 92.887 93.678 -3.9194 60 22 5 0 0 0 0.085258 1 18670 18670 60.39 0.59434 1 4045300 + 3216 19013;13629 1807 1809 3583 3583 0.07107563282522733 ALLYHSIL 8 Unmodified _ALLYHSIL_ 0 0 0 ENST00000344204.8_1_5:14508704-14508824:+|nuORF ENST00000344204.8_1_5:14508704-14508824:+|nuORF ENST00000344204.8_1_5:14508704-14508824:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2398681640625 2 465.276378 928.538203 -0.013639 -6.3459E-06 -1.0387 -0.00048329 -1.0524 -0.00048964 465.27437493572626 97.081 0.7909 93.162 92.887 93.678 -3.9194 60 22 5 0 0 0 0.2945 1 18656 18656 59.795 0 1 4045300 3217 8887 1808 1810 3584 3584 0.07107563282522733 ALMDQVHHM 9 Unmodified _ALMDQVHHM_ 0 0 0 ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2843627929688 2 541.249511 1080.48447 NaN NaN NaN NaN NaN NaN NaN 62.848 1 62.848 62.348 63.348 0 0 0 0 0.14843 1 12075 12075 30.637 16.73 1 3218 2928 1809 1811 3585 3585 -0.05255300483167957 ALMDQVHHM 9 Unmodified _ALMDQVHHM_ 0 0 0 ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2828979492188 2 541.249511 1080.48447 NaN NaN NaN NaN NaN NaN NaN 63.089 1 63.089 62.589 63.589 0 0 0 0 0.04451 1 12124 12124 54.774 29.374 1 3219 2928 1809 1811 3586 3586 -0.05255300483167957 ALMDQVHHM 9 Unmodified _ALMDQVHHM_ 0 0 0 ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2772216796875 2 541.249511 1080.48447 0.20438 0.00011062 0.19498 0.00010553 0.39936 0.00021615 541.2496302357447 65.932 0.5881 62.885 62.676 63.264 -3.047 21 16 2 0 0 0 0.13708 3 12790 12787;12790;12811 46.021 26.764 1 1305700 3220 2928 1809 1811 3587;3588;3589 3588 -0.05255300483167957 ALMDQVHHM 9 Unmodified _ALMDQVHHM_ 0 0 0 ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2609252929688 2 541.249511 1080.48447 0.33413 0.00018085 -0.16033 -8.6776E-05 0.17381 9.4072E-05 541.2493405650123 66.523 0.59048 63.027 62.594 63.184 -3.4965 21 16 2 0 0 0 0.10297 3 12445 12445;12485;12494 54.774 35.517 1 1131100 3221 2928 1809 1811 3590;3591;3592 3590 -0.05255300483167957 ALMDSSSSL 9 Unmodified _ALMDSSSSL_ 0 0 0 ENSG00000164953|ENST00000453321|TMEM67;TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant;ENST00000474944.5_1_8:94767142-94822123:+|nuORF ENSG00000164953|ENST00000453321|TMEM67 ENSG00000164953|ENST00000453321|TMEM67 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.4196166992188 1 910.418624 909.411348 0.15729 0.0001432 0.28296 0.00025761 0.44024 0.00040081 910.4189931875924 85.356 0.59943 81.692 81.365 81.964 -3.6641 27 16 2 0 0 0 0.0059038 2 16663 16663;16712 112.59 34.609 1 2958400 3222 5582 1810 1812 3593;3594 3593 -0.04698150724777861 ALMDSSSSL 9 Unmodified _ALMDSSSSL_ 0 0 0 ENSG00000164953|ENST00000453321|TMEM67;TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant;ENST00000474944.5_1_8:94767142-94822123:+|nuORF ENSG00000164953|ENST00000453321|TMEM67 ENSG00000164953|ENST00000453321|TMEM67 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 910.4188842773438 1 910.418624 909.411348 0.46324 0.00042174 0.31693 0.00028854 0.78016 0.00071027 910.4186456170804 85.771 0.58916 81.821 81.387 81.976 -3.9503 26 16 2 0 0 0 0.0098628 3 16294 16248;16294;16345 104.8 39.512 1 2976300 3223 5582 1810 1812 3595;3596;3597 3596 -0.04698150724777861 ALMDSSSSL 9 Unmodified _ALMDSSSSL_ 0 0 0 ENSG00000164953|ENST00000453321|TMEM67;TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant;ENST00000474944.5_1_8:94767142-94822123:+|nuORF ENSG00000164953|ENST00000453321|TMEM67 ENSG00000164953|ENST00000453321|TMEM67 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.4186401367188 1 910.418624 909.411348 0.18173 0.00016545 0.16481 0.00015004 0.34654 0.00031549 910.4186283211711 85.549 0.47845 81.837 81.529 82.008 -3.7117 22 13 2 0 0 0 0.00011526 2 16309 16309;16353 125.62 47.64 1 2605700 3224 5582 1810 1812 3598;3599 3598 -0.04698150724777861 ALMEQRLFWKF 11 Unmodified _ALMEQRLFWKF_ 0 0 0 nc|ENSG00000143543|O76095-2|JTB;ENSG00000143543|ENST00000271843|JTB nc|ENSG00000143543|O76095-2|JTB nc|ENSG00000143543|O76095-2|JTB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2656555175781 3 490.263835 1467.76968 NaN NaN NaN NaN NaN NaN NaN 117.44 1 113.03 112.53 113.53 -4.4088 0 0 0 0.22632 1 22603 22603 2.732 1.3246 1 3225 4500 1811 1813 3600 3600 0.054502429218700854 ALMGLRWCL 9 Unmodified _ALMGLRWCL_ 0 0 0 ENST00000569028.2_1_16:34714672-34714819:-|nuORF ENST00000569028.2_1_16:34714672-34714819:-|nuORF ENST00000569028.2_1_16:34714672-34714819:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2619018554688 2 531.78299 1061.55143 0.082529 4.3887E-05 -0.76341 -0.00040597 -0.68088 -0.00036208 531.7825542921472 117.89 1.1598 117.89 117.38 118.54 0 107 32 4 0 0 0 0.50294 1 23261 23261 19.439 1.2926 1 123050000 3226 11404 1812 1814 3601 3601 0.02311354798598586 ALMGSPQLV 9 Unmodified _ALMGSPQLV_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2193908691406 2 458.252046 914.489538 -0.027992 -1.2827E-05 -3.8246 -0.0017527 -3.8526 -0.0017655 458.2521359881309 127.91 0.78014 123.29 122.92 123.7 -4.6172 59 21 5 0 0 0 0.057505 1 25248 25248 68.081 29.93 1 2736400 3227 6310 1813 1815 3602 3602 0.028873266511027396 ALMGSPQLV 9 Unmodified _ALMGSPQLV_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.21929931640625 2 458.252046 914.489538 0.10623 4.8678E-05 0.018593 8.5201E-06 0.12482 5.7199E-05 458.2520501048219 128.21 0.73964 123.39 122.96 123.7 -4.817 34 20 2 0 0 0 0.14967 1 24611 24611 58.679 20.528 1 2660300 3228 6310 1813 1815 3603 3603 0.028873266511027396 ALMGSPQLV 9 Unmodified _ALMGSPQLV_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2194519042969 2 458.252046 914.489538 0.14866 6.8122E-05 -0.16127 -7.3903E-05 -0.012614 -5.7805E-06 458.2519809157306 128.13 0.74014 123.39 122.95 123.69 -4.7408 33 20 2 0 0 0 0.15214 1 24643 24643 43.858 11.741 1 2174200 3229 6310 1813 1815 3604 3604 0.028873266511027396 ALMISVKAK 9 Unmodified _ALMISVKAK_ 0 0 0 ENST00000298767.9_1_10:88259585-88259723:-|nuORF ENST00000298767.9_1_10:88259585-88259723:-|nuORF ENST00000298767.9_1_10:88259585-88259723:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 321.15380859375 3 320.868534 959.583773 0.096623 3.1003E-05 -0.48586 -0.0001559 -0.38924 -0.00012489 320.86844221686454 61.038 0.34808 57.669 57.548 57.896 -3.3694 11 9 2 0 0 0 0.86532 1 11421 11421 1.0715 0 1 361360 3230 8529 1814 1816 3605 3605 0.10236465473246881 ALMKVVMTPP 10 Unmodified _ALMKVVMTPP_ 0 0 0 REV__ENST00000542055.5_1_12:7507707-7510097:-|nuORF REV__ENST00000542055.5_1_12:7507707-7510097:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7896728515625 2 543.806131 1085.59771 NaN NaN NaN NaN NaN NaN NaN 151.27 1 146.03 145.53 146.53 -5.2365 0 0 0 2.8426 1 29319 29319 0.20733 0.079513 1 + 3231 21461 1815 1817 3606 3606 0.058333749100484056 ALMPVLNQV 9 Unmodified _ALMPVLNQV_ 0 0 0 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 493.2741394042969 2 492.78097 983.547388 0.21957 0.0001082 -0.25044 -0.00012341 -0.030871 -1.5213E-05 492.7808616673573 163.74 0.56261 158.7 158.37 158.94 -5.0446 39 15 3 0 0 0 6.2679E-06 1 31872 31872 54.068 39.082 1 21930000 3232 7774 1816 1818 3607 3607 0.05495588576548016 ALMPVLNQV 9 Unmodified _ALMPVLNQV_ 0 0 0 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 492.78097 983.547388 0.19845 9.7794E-05 -0.22234 -0.00010957 -0.023887 -1.1771E-05 492.7809257076481 158.54 0.9472 158.54 158.11 159.06 0 -0.060498 -3.576E-05 NaN 54.068 60 26 3 NaN NaN NaN NaN 0 NaN NaN 0 10384000 3233 7774 1816 1818 0.05495588576548016 ALMPVLNQV 9 Unmodified _ALMPVLNQV_ 0 0 0 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 492.78097 983.547388 0.28321 0.00013956 -0.13739 -6.7702E-05 0.14582 7.186E-05 492.780854883273 163.32 0.54822 158.53 158.2 158.75 -4.7898 -0.072696 4.7967E-05 NaN 54.068 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 22310000 3234 7774 1816 1818 0.05495588576548016 ALMPVLNQV 9 Unmodified _ALMPVLNQV_ 0 0 0 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 492.78097 983.547388 0.2577 0.00012699 -0.13442 -6.6241E-05 0.12327 6.0746E-05 492.7808815755065 163.7 0.47522 158.64 158.35 158.83 -5.0648 0.035779 5.0888E-05 NaN 54.068 30 13 4 NaN NaN NaN NaN 0 NaN NaN 0 19242000 3235 7774 1816 1818 0.05495588576548016 ALNCVGKG 8 Unmodified _ALNCVGKG_ 0 0 0 ENSG00000117360|ENST00000324862|PRPF3;ENST00000496202.5_1_1:150297400-150300075:+|nuORF;PRPF3|p.F311Lfs*69|1|0.18|ENSG00000117360|chr1:150335134-150335134|T/-|frameshift_variant ENSG00000117360|ENST00000324862|PRPF3 ENSG00000117360|ENST00000324862|PRPF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.20977783203125 2 381.202356 760.390159 NaN NaN NaN NaN NaN NaN NaN 91.224 1 87.13 86.63 87.63 -4.0946 0 0 0 0.2396 1 17382 17382 0 0 1 3236 2980 1817 1819 3608 3608 0.00037928757024019433 ALNENIDRV 9 Unmodified _ALNENIDRV_ 0 0 0 ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;nc|ENSG00000152782|Q8TE04-3|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1 ENSG00000152782|ENST00000307534|PANK1 ENSG00000152782|ENST00000307534|PANK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.277587890625 2 522.277638 1042.54072 -0.10611 -5.5421E-05 0.52017 0.00027167 0.41406 0.00021625 522.2778207369149 60.566 0.45291 60.566 60.245 60.698 0 22 12 2 0 0 0 0.33094 2 11615 11569;11615 29.841 12.398 1 1314500 3237 4941 1818 1820 3609;3610 3610 0.021153669495106442 ALNENIDRV 9 Unmodified _ALNENIDRV_ 0 0 0 ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;nc|ENSG00000152782|Q8TE04-3|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1 ENSG00000152782|ENST00000307534|PANK1 ENSG00000152782|ENST00000307534|PANK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2777709960938 2 522.277638 1042.54072 -0.16128 -8.4234E-05 0.57331 0.00029943 0.41203 0.00021519 522.2778186318227 63.377 0.43628 60.379 60.119 60.555 -2.9975 23 12 2 0 0 0 0.33094 1 12208 12208 29.841 7.1825 1 2799900 3238 4941 1818 1820 3611 3611 0.021153669495106442 ALNENIDRV 9 Unmodified _ALNENIDRV_ 0 0 0 ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;nc|ENSG00000152782|Q8TE04-3|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1 ENSG00000152782|ENST00000307534|PANK1 ENSG00000152782|ENST00000307534|PANK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2777709960938 2 522.277638 1042.54072 -0.53052 -0.00027708 1.1127 0.00058112 0.58214 0.00030404 522.2780749480254 63.831 0.48493 60.415 60.149 60.634 -3.4158 21 13 2 0 0 0 0.17734 2 11950 11899;11950 40.239 11.745 1 2273300 3239 4941 1818 1820 3612;3613 3613 0.021153669495106442 ALNENIDRV 9 Unmodified _ALNENIDRV_ 0 0 0 ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;nc|ENSG00000152782|Q8TE04-3|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1 ENSG00000152782|ENST00000307534|PANK1 ENSG00000152782|ENST00000307534|PANK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2776489257812 2 522.277638 1042.54072 0.31337 0.00016367 0.012355 6.4525E-06 0.32573 0.00017012 522.2775926910483 63.67 0.52022 60.414 60.122 60.643 -3.2567 26 14 2 0 0 0 0.21532 2 11965 11920;11965 36.506 7.5483 1 2771600 3240 4941 1818 1820 3614;3615 3615 0.021153669495106442 ALNHLLLSY 9 Unmodified _ALNHLLLSY_ 0 0 0 ENST00000581639.1_1_17:66287688-66303257:+|nuORF;ENST00000448504.6_1_17:66255510-66303257:+|nuORF ENST00000581639.1_1_17:66287688-66303257:+|nuORF ENST00000581639.1_1_17:66287688-66303257:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2583618164062 2 522.297842 1042.58113 NaN NaN NaN NaN NaN NaN NaN 143.07 1 138.17 137.67 138.67 -4.8982 0 0 0 0.21848 1 27613 27613 18.135 1.0221 1 3241 9957 1819 1821 3616 3616 0.06154333339964069 ALNHWRAKR 9 Unmodified _ALNHWRAKR_ 0 0 0 ENST00000502634.1_1_5:20304521-20305535:-|nuORF ENST00000502634.1_1_5:20304521-20305535:-|nuORF ENST00000502634.1_1_5:20304521-20305535:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3326416015625 2 576.330873 1150.64719 NaN NaN NaN NaN NaN NaN NaN 154.8 1 149.52 149.02 150.02 -5.2854 0 0 0 0.19632 1 30021 30021 0.0033805 0.0019993 1 3242 10629 1820 1822 3617 3617 0.07789587025354194 ALNKRAAG 8 Unmodified _ALNKRAAG_ 0 0 0 REV__ENSG00000108797|ENST00000264638|CNTNAP1 REV__ENSG00000108797|ENST00000264638|CNTNAP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.741455078125 2 400.740494 799.466435 NaN NaN NaN NaN NaN NaN NaN 138.74 1 134.1 133.6 134.6 -4.6439 0 0 0 0.23366 1 27397 27397 0.25148 0.18749 1 + 3243 15138 1821 1823 3618 3618 0.05868068648658209 ALNPFSKFY 9 Unmodified _ALNPFSKFY_ 0 0 0 REV__ENSG00000188783|ENST00000343110|PRELP REV__ENSG00000188783|ENST00000343110|PRELP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7869262695312 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 126.93 1 122.32 121.82 122.82 -4.6172 0 0 0 0.19679 1 25030 25030 0.40827 0 1 + 3244 19170 1822 1824 3619 3619 0.015226444486188484 ALNQPNDMY 9 Unmodified _ALNQPNDMY_ 0 0 0 REV__ENSG00000169499|ENST00000617275|PLEKHA2 REV__ENSG00000169499|ENST00000617275|PLEKHA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2781372070312 2 533.237124 1064.45969 NaN NaN NaN NaN NaN NaN NaN 145.63 1 145.63 145.13 146.13 0 0 0 0 0.23508 1 29108 29108 11.64 3.7301 1 + 3245 18106 1823 1825 3620 3620 -0.06995657084894447 ALNRGGAC 8 Unmodified _ALNRGGAC_ 0 0 0 REV__ENST00000599599.5_2_19:57106694-57112946:+|nuORF REV__ENST00000599599.5_2_19:57106694-57112946:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2110290527344 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 80.013 1 76.503 76.003 77.003 -3.5102 0 0 0 0.23711 1 15625 15625 0.12286 0.049601 1 + 3246 23404 1824 1826 3621 3621 -0.024761260455534284 ALNRGGAC 8 Unmodified _ALNRGGAC_ 0 0 0 REV__ENST00000599599.5_2_19:57106694-57112946:+|nuORF REV__ENST00000599599.5_2_19:57106694-57112946:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2096252441406 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 85.949 1 82.222 81.722 82.722 -3.727 0 0 0 0.23711 1 16802 16802 0.12286 0.12286 1 + 3247 23404 1824 1826 3622 3622 -0.024761260455534284 ALNRNVLR 8 Unmodified _ALNRNVLR_ 0 0 0 REV__ENST00000573850.1_1_16:27709674-27761267:+|nuORF REV__ENST00000573850.1_1_16:27709674-27761267:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7257385253906 2 478.293425 954.572297 0.17656 8.4445E-05 0.65471 0.00031314 0.83127 0.00039759 478.29447126990027 123.91 0.59818 119.33 119.1 119.7 -4.5757 25 16 2 0 0 0 8448 1 24476 24476 3.5871 1.8448 1 1014700 + 3248 14065 1825 1827 3623 3623 0.09319404494135597 ALPDETEV 8 Unmodified _ALPDETEV_ 0 0 0 ENST00000521327.1_1_5:151052612-151066451:-|nuORF;ENSG00000113140|ENST00000231061|SPARC ENST00000521327.1_1_5:151052612-151066451:-|nuORF ENST00000521327.1_1_5:151052612-151066451:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2155456542969 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 122.97 1 118.38 117.88 118.88 -4.5926 0 0 0 0.18985 1 23672 23672 28.173 1.832 1 3249 2724 1826 1828 3624 3624 -0.028581933643749835 ALPDSMVSV 9 Unmodified _ALPDSMVSV_ 0 0 0 ENSG00000188554|ENST00000590996|NBR1;nc|ENSG00000188554|Q14596-2|NBR1;NBR1|p.L746Wfs*50|1|0.23|ENSG00000188554|chr17:43200372-43200372|C/-|frameshift_variant ENSG00000188554|ENST00000590996|NBR1 ENSG00000188554|ENST00000590996|NBR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23583984375 2 459.733686 917.452819 0.10724 4.9302E-05 0.079198 3.641E-05 0.18644 8.5712E-05 459.73366793634506 123.05 0.92746 118.47 118.06 118.99 -4.5757 35 25 2 0 0 0 0.11968 2 24253 24253;24308 19.626 18.411 1 1845700 3250 7176 1827 1829 3625;3626 3625 -0.00920969965443419 ALPDSMVSV 9 Unmodified _ALPDSMVSV_ 0 0 0 ENSG00000188554|ENST00000590996|NBR1;nc|ENSG00000188554|Q14596-2|NBR1;NBR1|p.L746Wfs*50|1|0.23|ENSG00000188554|chr17:43200372-43200372|C/-|frameshift_variant ENSG00000188554|ENST00000590996|NBR1 ENSG00000188554|ENST00000590996|NBR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.733686 917.452819 0.41405 0.00019035 -0.25916 -0.00011914 0.15489 7.121E-05 459.73349008585825 123.23 0.71152 118.5 118.22 118.93 -4.731 0.016431 -0.00015381 NaN 19.626 23 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1345600 3251 7176 1827 1829 -0.00920969965443419 ALPEVQKQV 9 Unmodified _ALPEVQKQV_ 0 0 0 ENST00000405489.7_2_2:27435269-27435350:+|nuORF ENST00000405489.7_2_2:27435269-27435350:+|nuORF ENST00000405489.7_2_2:27435269-27435350:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 506.7529296875 2 506.295299 1010.57605 -0.1047 -5.3009E-05 -0.04838 -2.4495E-05 -0.15308 -7.7503E-05 506.29522743971444 59.65 0.78039 59.65 59.321 60.102 0 53 21 3 0 0 0 0.54058 1 11502 11502 12.241 12.241 1 6937200 3252 9533 1828 1830 3627 3627 0.0711802947733986 ALPEVQKQV 9 Unmodified _ALPEVQKQV_ 0 0 0 ENST00000405489.7_2_2:27435269-27435350:+|nuORF ENST00000405489.7_2_2:27435269-27435350:+|nuORF ENST00000405489.7_2_2:27435269-27435350:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 506.295299 1010.57605 0.0043739 2.2145E-06 -0.10427 -5.279E-05 -0.099892 -5.0575E-05 506.2952125128582 62.531 0.70141 59.569 59.179 59.88 -2.9614 -0.052304 -5.0641E-05 NaN 12.241 54 19 3 NaN NaN NaN NaN 0 NaN NaN 0 9375400 3253 9533 1828 1830 0.0711802947733986 ALPEVQKQV 9 Unmodified _ALPEVQKQV_ 0 0 0 ENST00000405489.7_2_2:27435269-27435350:+|nuORF ENST00000405489.7_2_2:27435269-27435350:+|nuORF ENST00000405489.7_2_2:27435269-27435350:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 506.295299 1010.57605 -0.1702 -8.6174E-05 0.10314 5.2218E-05 -0.067066 -3.3955E-05 506.29533817243345 63.048 0.78422 59.632 59.295 60.079 -3.4158 0.010262 0.00015937 NaN 12.241 52 21 4 NaN NaN NaN NaN 0 NaN NaN 0 7569300 3254 9533 1828 1830 0.0711802947733986 ALPEVQKQV 9 Unmodified _ALPEVQKQV_ 0 0 0 ENST00000405489.7_2_2:27435269-27435350:+|nuORF ENST00000405489.7_2_2:27435269-27435350:+|nuORF ENST00000405489.7_2_2:27435269-27435350:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 506.295299 1010.57605 0.14401 7.2911E-05 -0.14003 -7.0896E-05 0.0039802 2.0152E-06 506.29517696598947 62.892 0.76199 59.635 59.19 59.952 -3.2567 0.013865 -8.6854E-05 NaN 12.241 59 21 4 NaN NaN NaN NaN 0 NaN NaN 0 10154000 3255 9533 1828 1830 0.0711802947733986 ALPEVSVEA 9 Unmodified _ALPEVSVEA_ 0 0 0 MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant;nc|ENSG00000129680|Q8IWC1-3|MAP7D3;nc|ENSG00000129680|Q8IWC1-4|MAP7D3;ENSG00000129680|ENST00000316077|MAP7D3;nc|ENSG00000129680|Q8IWC1-2|MAP7D3 MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23028564453125 2 457.745108 913.475663 0.71341 0.00032656 -0.45159 -0.00020671 0.26181 0.00011984 457.7448567375448 106.54 1.2422 102.45 101.71 102.95 -4.0913 75 35 3 0 0 0 0.064056 2 20410 20392;20410 36.044 13.898 1 14460000 3256 3572 1829 1831 3628;3629 3629 0.015463724236724374 ALPGPQPR 8 Unmodified _ALPGPQPR_ 0 0 0 REV__ENST00000568025.1_1_6:166796808-166797144:+|nuORF REV__ENST00000568025.1_1_6:166796808-166797144:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 418.24346923828125 2 418.24287 834.471186 NaN NaN NaN NaN NaN NaN NaN 72.907 1 69.28 68.78 69.78 -3.6275 0 0 0 0.21486 1 13775 13775 9.3474 3.587 1 + 3257 23138 1830 1832 3630 3630 0.04732952791414391 ALPMEATVS 9 Unmodified _ALPMEATVS_ 0 0 0 nc|ENSG00000279847|E5RJ46|LINC02906 nc|ENSG00000279847|E5RJ46|LINC02906 nc|ENSG00000279847|E5RJ46|LINC02906 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2293395996094 2 459.733686 917.452819 0.10724 4.9302E-05 0.079198 3.641E-05 0.18644 8.5712E-05 459.73366793634506 123.05 0.92746 118.47 118.06 118.99 -4.5757 35 25 2 0 0 0 0.44262 1 24288 24288 23.148 0 1 1845700 3258 12641 1831 1833 3631 3631 -0.00920969965443419 ALPPVLTTV 9 Unmodified _ALPPVLTTV_ 0 0 0 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant;ENSG00000155506|ENST00000518297|LARP1 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 910.4152221679688 1 910.560795 909.553519 0.53046 0.00048301 -0.0097369 -8.866E-06 0.52072 0.00047415 910.5605331135195 155.25 0.87204 155.25 154.71 155.59 0 36 24 2 0 0 0 0.036825 3 31163 31163;31167;31169 77.984 27.129 1 5733300 3259 5046 1832 1834 3632;3633;3634 3632 0.09512430079689693 ALPPVLTTV 9 Unmodified _ALPPVLTTV_ 0 0 0 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant;ENSG00000155506|ENST00000518297|LARP1 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.4007568359375 1 910.560795 909.553519 0.37449 0.000341 -0.053809 -4.8996E-05 0.32069 0.000292 910.5607267884313 159.89 0.99409 155.1 154.59 155.58 -4.7952 41 27 2 0 0 0 0.055376 2 31870 31708;31870 60.39 31.903 1 5153000 3260 5046 1832 1834 3635;3636 3636 0.09512430079689693 ALPPVLTTV 9 Unmodified _ALPPVLTTV_ 0 0 0 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant;ENSG00000155506|ENST00000518297|LARP1 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 456.29449462890625 2 455.784036 909.553519 0.13347 6.0835E-05 0.14131 6.4407E-05 0.27478 0.00012524 455.7840357964 160.56 1.2371 155.33 154.73 155.97 -5.2299 90 34 3 0 0 0 0.091132 2 31279 31104;31279 26.995 22.279 1 9098500 3261 5046 1832 1834 3637;3638 3638 0.09512430079689693 ALPPVLTTV 9 Unmodified _ALPPVLTTV_ 0 0 0 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant;ENSG00000155506|ENST00000518297|LARP1 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.425537109375 1 910.560795 909.553519 0.5906 0.00053778 0.043825 3.9905E-05 0.63442 0.00057768 910.5606413228428 160.49 0.94531 155.24 154.75 155.7 -5.2526 35 26 2 0 0 0 0.029139 3 31133 31133;31195;31210 92.822 19.156 1 4149400 3262 5046 1832 1834 3639;3640;3641 3639 0.09512430079689693 ALPPVLTTV 9 Unmodified _ALPPVLTTV_ 0 0 0 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant;ENSG00000155506|ENST00000518297|LARP1 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 456.2756042480469 2 455.784036 909.553519 0.42302 0.0001928 -0.1052 -4.7948E-05 0.31782 0.00014486 455.7839105421382 160.69 1.4092 155.44 154.61 156.02 -5.2526 94 39 3 0 0 0 0.058954 1 31214 31214 31.728 16.742 1 9217500 3263 5046 1832 1834 3642 3642 0.09512430079689693 ALPPVLTTV 9 Unmodified _ALPPVLTTV_ 0 0 0 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant;ENSG00000155506|ENST00000518297|LARP1 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 455.784036 909.553519 0.26938 0.00012278 -0.019444 -8.8621E-06 0.24993 0.00011392 455.78395042718 155.21 1.2303 155.21 154.5 155.73 0 -0.054712 -6.0353E-05 NaN 31.728 81 34 3 NaN NaN NaN NaN 0 NaN NaN 0 11731000 3264 5046 1832 1834 0.09512430079689693 ALPPVLTTV 9 Unmodified _ALPPVLTTV_ 0 0 0 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant;ENSG00000155506|ENST00000518297|LARP1 LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 910.560795 909.553519 0.419 0.00038153 0.23237 0.00021159 0.65138 0.00059312 910.5609660888977 160.58 0.95459 155.35 154.91 155.87 -5.2299 0.11615 0.00017998 NaN 92.822 39 26 2 NaN NaN NaN NaN 0 NaN NaN 0 5923500 3265 5046 1832 1834 0.09512430079689693 ALPQRAFILAR 11 Unmodified _ALPQRAFILAR_ 0 0 0 REV__ENST00000392455.7_2_3:191047024-191047468:+|nuORF REV__ENST00000392455.7_2_3:191047024-191047468:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 420.59844970703125 3 419.259302 1254.75608 0.048462 2.0318E-05 -0.19203 -8.0512E-05 -0.14357 -6.0194E-05 419.2592532998985 122.52 1.5278 117.97 117.46 118.98 -4.5475 158 42 6 0 0 0 0.54604 1 24235 24235 8.4443 5.372 1 284230000 + 3266 21219 1833 1835 3643 3643 0.13888753204969362 ALPQRAFILAR 11 Unmodified _ALPQRAFILAR_ 0 0 0 REV__ENST00000392455.7_2_3:191047024-191047468:+|nuORF REV__ENST00000392455.7_2_3:191047024-191047468:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 419.259302 1254.75608 0.048462 2.0318E-05 -0.19203 -8.0512E-05 -0.14357 -6.0194E-05 419.2592532998985 122.52 1.5278 117.97 117.46 118.98 -4.5475 -0.077601 6.307E-05 NaN 8.4443 158 42 6 NaN NaN NaN NaN 0 NaN NaN 0 284230000 + 3267 21219 1833 1835 0.13888753204969362 ALPQRAFILAR 11 Unmodified _ALPQRAFILAR_ 0 0 0 REV__ENST00000392455.7_2_3:191047024-191047468:+|nuORF REV__ENST00000392455.7_2_3:191047024-191047468:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 419.259302 1254.75608 0.47094 0.00019745 -0.51896 -0.00021758 -0.048014 -2.013E-05 419.25910601162474 122.76 1.5682 118.03 117.5 119.07 -4.731 -0.022849 -0.00034812 NaN 8.4443 148 44 5 NaN NaN NaN NaN 0 NaN NaN 0 163630000 + 3268 21219 1833 1835 0.13888753204969362 ALPQRAFILAR 11 Unmodified _ALPQRAFILAR_ 0 0 0 REV__ENST00000392455.7_2_3:191047024-191047468:+|nuORF REV__ENST00000392455.7_2_3:191047024-191047468:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 419.259302 1254.75608 -0.029999 -1.2578E-05 0.050875 2.133E-05 0.020875 8.7521E-06 419.259315505219 122.68 1.0234 118.15 117.69 118.71 -4.5305 0.10045 0.0003686 NaN 8.4443 97 28 5 NaN NaN NaN NaN 0 NaN NaN 0 30553000 + 3269 21219 1833 1835 0.13888753204969362 ALPRGECHY 9 Unmodified _ALPRGECHY_ 0 0 0 ENST00000542454.2_2_14:96706910-96707273:+|nuORF ENST00000542454.2_2_14:96706910-96707273:+|nuORF ENST00000542454.2_2_14:96706910-96707273:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6781005859375 2 523.247826 1044.4811 -0.40483 -0.00021182 3.5678 0.0018668 3.1629 0.001655 523.2486672687106 163.78 0.10388 158.74 158.65 158.76 -5.0446 4 2 2 0 0 0 0.60805 1 31893 31893 12.532 2.4576 1 3943500 3270 11088 1834 1836 3644 3644 -0.039362272654898334 ALPSAHRLP 9 Unmodified _ALPSAHRLP_ 0 0 0 ENST00000491948.5_1_22:24200079-24200214:+|nuORF ENST00000491948.5_1_22:24200079-24200214:+|nuORF ENST00000491948.5_1_22:24200079-24200214:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2377014160156 2 481.282526 960.550499 NaN NaN NaN NaN NaN NaN NaN 133.94 1 129.12 128.62 129.62 -4.8175 0 0 0 0.19704 1 25783 25783 0.37959 0.25177 1 3271 10534 1835 1837 3645 3645 0.06864599745563282 ALPSAQLDL 9 Unmodified _ALPSAQLDL_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000149451|Q9BZ11-3|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25042724609375 2 464.260925 926.507297 -0.046488 -2.1583E-05 0.1316 6.1097E-05 0.085112 3.9514E-05 464.26092540965686 101.37 0.73185 97.213 96.874 97.606 -4.1594 49 20 3 0 0 0 0.60805 1 19871 19871 12.532 0.89125 1 8597400 3272 4792 1836 1838 3646 3646 0.04110365177609765 ALPSAQLDL 9 Unmodified _ALPSAQLDL_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000149451|Q9BZ11-3|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.260925 926.507297 0.18819 8.737E-05 -0.18376 -8.5313E-05 0.0044292 2.0563E-06 464.2608301368276 97.387 0.65945 97.387 97.049 97.709 0 0.071435 1.7178E-05 NaN 12.532 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4663900 3273 4792 1836 1838 0.04110365177609765 ALPSAQLDL 9 Unmodified _ALPSAQLDL_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000149451|Q9BZ11-3|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.260925 926.507297 0.28259 0.0001312 -0.25878 -0.00012014 0.023811 1.1055E-05 464.2608076457221 101.62 0.75061 97.298 96.922 97.673 -4.3208 -0.017348 -5.2476E-05 NaN 12.532 51 21 3 NaN NaN NaN NaN 0 NaN NaN 0 7785800 3274 4792 1836 1838 0.04110365177609765 ALPSAQLDL 9 Unmodified _ALPSAQLDL_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000149451|Q9BZ11-3|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.260925 926.507297 0.41475 0.00019255 -0.43023 -0.00019974 -0.015473 -7.1835E-06 464.26066343306303 101.35 0.84052 97.364 96.957 97.798 -3.9895 0.048811 -0.00021167 NaN 12.532 53 23 3 NaN NaN NaN NaN 0 NaN NaN 0 6959600 3275 4792 1836 1838 0.04110365177609765 ALPTGGHI 8 Unmodified _ALPTGGHI_ 0 0 0 CON__ENSEMBL:ENSBTAP00000016046;nc|ENSG00000077942|P23142-2|FBLN1;nc|ENSG00000077942|P23142-3|FBLN1;nc|ENSG00000077942|P23142-4|FBLN1;ENSG00000077942|ENST00000327858|FBLN1 CON__ENSEMBL:ENSBTAP00000016046;nc|ENSG00000077942|P23142-2|FBLN1 nc|ENSG00000077942|P23142-2|FBLN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 383.2069091796875 2 383.216321 764.418088 NaN NaN NaN NaN NaN NaN NaN 98.131 1 93.861 93.361 94.361 -4.2692 0 0 0 0.21486 1 18753 18753 2.8892 0 1 + 3276 640;1565 1837 1839 3647 3647 0.0264557500876208 ALQAALAES 9 Unmodified _ALQAALAES_ 0 0 0 ENSG00000102871|ENST00000345057|TRADD ENSG00000102871|ENST00000345057|TRADD ENSG00000102871|ENST00000345057|TRADD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21746826171875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 62.052 1 62.052 61.552 62.552 0 0 0 0 0.23508 1 11910 11910 7.9102 2.6795 1 3277 2147 1838 1840 3648 3648 0.019015056264720442 ALQAELTE 8 Unmodified _ALQAELTE_ 0 0 0 ERC2|p.D867Mfs*31|1|0.61|ENSG00000187672|chr3:55734885-55734885|T/-|frameshift_variant;ENSG00000187672|ENST00000288221|ERC2 ERC2|p.D867Mfs*31|1|0.61|ENSG00000187672|chr3:55734885-55734885|T/-|frameshift_variant ERC2|p.D867Mfs*31|1|0.61|ENSG00000187672|chr3:55734885-55734885|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2161560058594 2 437.729458 873.444362 -0.1235 -5.406E-05 0.3913 0.00017128 0.2678 0.00011722 437.7295461612094 81.724 0.79174 78.167 77.723 78.515 -3.557 31 22 2 0 0 0 0.72565 1 15915 15915 10.074 0 1 1286000 3278 7119 1839 1841 3649 3649 0.002577993895670261 ALQALAKY 8 Unmodified _ALQALAKY_ 0 0 0 nc|ENSG00000166535|A8K2U0-2|A2ML1;ENSG00000166535|ENST00000299698|A2ML1 nc|ENSG00000166535|A8K2U0-2|A2ML1 nc|ENSG00000166535|A8K2U0-2|A2ML1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 438.6695861816406 2 439.260728 876.506903 -0.070091 -3.0788E-05 -0.085483 -3.7549E-05 -0.15557 -6.8338E-05 439.2606544340446 107.23 0.40736 102.82 102.62 103.02 -4.4121 14 11 2 0 0 0 0.87247 1 20547 20547 1.7423 1.0609 1 562900 3279 5731 1840 1842 3650 3650 0.06370990248410635 ALQCEVSDP 9 Unmodified _ALQCEVSDP_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.245361328125 2 481.2184 960.422247 0.34253 0.00016483 1.0264 0.00049392 1.3689 0.00065876 481.2201095921302 100.37 0.69054 100.37 100 100.69 0 44 19 3 0 0 0 0.46882 1 19694 19694 21.537 1.0834 1 2240000 3280 5009 1841 1843 3651 3651 -0.0595474835049572 ALQCEVSDP 9 Unmodified _ALQCEVSDP_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24395751953125 2 481.2184 960.422247 -0.14949 -7.1936E-05 0.82074 0.00039496 0.67125 0.00032302 481.22041489432337 104.4 0.68543 100.18 99.89 100.58 -4.2183 46 19 4 0 0 0 0.36931 1 20520 20520 27.629 2.2295 1 3065800 3281 5009 1841 1843 3652 3652 -0.0595474835049572 ALQEASEAYL 10 Unmodified _ALQEASEAYL_ 0 0 0 ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000163041|ENST00000366815|H3-3A;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENSG00000269466|ENST00000598383|H3Y1;ENSG00000268799|ENST00000600799|H3Y2 ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000269466|ENST00000598383|H3Y1 ENST00000401004.2_1:120904811-120905087:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7822875976562 2 547.771854 1093.52915 0.46294 0.00025358 0.20706 0.00011342 0.67 0.00036701 547.7718929090582 98.244 0.5948 98.244 98.018 98.613 0 24 16 2 0 0 0 0.14114 3 19244 19233;19244;19280 49.527 21.354 1 2667500 3282 3732;7997 1842 1844 3653;3654;3655 3654 -0.013868748644881634 ALQEASEAYL 10 Unmodified _ALQEASEAYL_ 0 0 0 ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000163041|ENST00000366815|H3-3A;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENSG00000269466|ENST00000598383|H3Y1;ENSG00000268799|ENST00000600799|H3Y2 ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000269466|ENST00000598383|H3Y1 ENST00000401004.2_1:120904811-120905087:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7935791015625 2 547.771854 1093.52915 0.29889 0.00016373 0.021343 1.1691E-05 0.32024 0.00017542 547.7718861767562 102.86 0.69543 98.543 98.22 98.915 -4.3208 35 19 3 0 0 0 0.15447 4 19694 19655;19668;19694;19714 47.594 16.219 1 2951300 3283 3732;7997 1842 1844 3656;3657;3658;3659 3658 -0.013868748644881634 ALQEASEAYL 10 Unmodified _ALQEASEAYL_ 0 0 0 ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000163041|ENST00000366815|H3-3A;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENSG00000269466|ENST00000598383|H3Y1;ENSG00000268799|ENST00000600799|H3Y2 ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000269466|ENST00000598383|H3Y1 ENST00000401004.2_1:120904811-120905087:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.771728515625 2 547.771854 1093.52915 0.59732 0.0003272 1.7503 0.00095875 2.3476 0.0012859 547.7716692582165 102.63 1.4577 98.605 97.425 98.882 -4.0212 58 41 2 0 0 0 0.12513 2 19707 19707;19752 53.404 17.277 1 2599000 3284 3732;7997 1842 1844 3660;3661 3660 -0.013868748644881634 ALQEASEAYL 10 Unmodified _ALQEASEAYL_ 0 0 0 ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000163041|ENST00000366815|H3-3A;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENSG00000269466|ENST00000598383|H3Y1;ENSG00000268799|ENST00000600799|H3Y2 ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000269466|ENST00000598383|H3Y1 ENST00000401004.2_1:120904811-120905087:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.771854 1093.52915 0.14353 7.8622E-05 0.30296 0.00016595 0.44649 0.00024457 547.7718600620036 102.72 0.60474 98.536 98.2 98.805 -4.1861 0.05402 3.6239E-05 NaN 53.404 33 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2130800 3285 3732;7997 1842 1844 -0.013868748644881634 ALQECPPTLA 10 Unmodified _ALQECPPTLA_ 0 0 0 PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant;PHC1|p.A848Dfs*59|1|0.09|ENSG00000111752|chr12:8937240-8937241|-/ACCAC|frameshift_variant;ENSG00000111752|ENST00000544916|PHC1 PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2593994140625 2 521.765517 1041.51648 0.15875 8.2832E-05 1.2347 0.00064421 1.3934 0.00072704 521.7655152672486 18.742 0.69627 18.742 18.335 19.031 0 30 19 2 0 0 0 0.63858 1 3064 3064 17.113 1.2657 1 437920 3286 2645 1843 1845 3662 3662 -0.00261609528365625 ALQECPPTLA 10 Unmodified _ALQECPPTLA_ 0 0 0 PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant;PHC1|p.A848Dfs*59|1|0.09|ENSG00000111752|chr12:8937240-8937241|-/ACCAC|frameshift_variant;ENSG00000111752|ENST00000544916|PHC1 PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2756958007812 2 521.765517 1041.51648 0.038421 2.0047E-05 3.4333 0.0017914 3.4717 0.0018114 521.7657177304187 20.445 0.76769 19.048 18.447 19.214 -1.3966 36 21 3 0 0 0 0.53552 1 3371 3371 22.736 1.1993 1 563540 3287 2645 1843 1845 3663 3663 -0.00261609528365625 ALQEGHQFL 9 Unmodified _ALQEGHQFL_ 0 0 0 ENSG00000164978|ENST00000379158|NUDT2 ENSG00000164978|ENST00000379158|NUDT2 ENSG00000164978|ENST00000379158|NUDT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2606201171875 2 521.769448 1041.52434 0.32226 0.00016814 -3.7338 -0.0019482 -3.4115 -0.00178 521.7671076889493 84.176 0.76646 84.176 83.649 84.416 0 27 21 2 0 0 0 0.12505 1 16412 16412 47.749 19.262 1 1243400 3288 5584 1844 1846 3664 3664 0.005242857834218739 ALQEGHQFL 9 Unmodified _ALQEGHQFL_ 0 0 0 ENSG00000164978|ENST00000379158|NUDT2 ENSG00000164978|ENST00000379158|NUDT2 ENSG00000164978|ENST00000379158|NUDT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.271240234375 2 521.769448 1041.52434 -0.30938 -0.00016142 0.16722 8.7249E-05 -0.14216 -7.4176E-05 521.769636222129 87.9 0.61516 84.107 83.87 84.485 -3.7926 23 16 2 0 0 0 0.10537 2 17212 17212;17216 37.075 24.834 1 2674000 3289 5584 1844 1846 3665;3666 3665 0.005242857834218739 ALQEGHQFL 9 Unmodified _ALQEGHQFL_ 0 0 0 ENSG00000164978|ENST00000379158|NUDT2 ENSG00000164978|ENST00000379158|NUDT2 ENSG00000164978|ENST00000379158|NUDT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2703857421875 2 521.769448 1041.52434 0.21582 0.00011261 -0.49286 -0.00025716 -0.27705 -0.00014455 521.7692254387799 87.935 0.49226 84.185 83.799 84.292 -3.7501 23 13 2 0 0 0 0.11032 2 16788 16788;16836 52.268 19.963 1 1708400 3290 5584 1844 1846 3667;3668 3667 0.005242857834218739 ALQETLIRA 9 Unmodified _ALQETLIRA_ 0 0 0 ENST00000492552.5_1_3:23987629-24018907:+|nuORF;ENSG00000174738|ENST00000312521|NR1D2 ENST00000492552.5_1_3:23987629-24018907:+|nuORF ENST00000492552.5_1_3:23987629-24018907:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 508.792236328125 2 507.800749 1013.58694 -0.08239 -4.1838E-05 -0.16816 -8.5394E-05 -0.25055 -0.00012723 507.8005974588923 93.442 0.55043 89.451 89.209 89.759 -3.9907 36 15 3 0 0 0 0.058839 1 18297 18297 51.415 30.544 1 2492500 3291 6365 1845 1847 3669 3669 0.0806943185162936 ALQETLIRA 9 Unmodified _ALQETLIRA_ 0 0 0 ENST00000492552.5_1_3:23987629-24018907:+|nuORF;ENSG00000174738|ENST00000312521|NR1D2 ENST00000492552.5_1_3:23987629-24018907:+|nuORF ENST00000492552.5_1_3:23987629-24018907:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 507.800749 1013.58694 -0.14686 -7.4574E-05 -0.24737 -0.00012562 -0.39423 -0.00020019 507.8006868484225 93.688 0.57332 89.544 89.213 89.786 -4.1435 0.017553 -1.5939E-06 NaN 51.415 33 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2635400 3292 6365 1845 1847 0.0806943185162936 ALQETLIRA 9 Unmodified _ALQETLIRA_ 0 0 0 ENST00000492552.5_1_3:23987629-24018907:+|nuORF;ENSG00000174738|ENST00000312521|NR1D2 ENST00000492552.5_1_3:23987629-24018907:+|nuORF ENST00000492552.5_1_3:23987629-24018907:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 507.800749 1013.58694 -0.016744 -8.5024E-06 -0.29731 -0.00015097 -0.31405 -0.00015948 507.8005357433803 93.428 0.6945 89.584 89.296 89.99 -3.844 0.057682 -5.2308E-05 NaN 51.415 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2767300 3293 6365 1845 1847 0.0806943185162936 ALQGCLVAY 9 Unmodified _ALQGCLVAY_ 0 0 0 REV__nc|ENSG00000137824|Q96TC7-2|RMDN3 REV__nc|ENSG00000137824|Q96TC7-2|RMDN3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.1435546875 3 313.165239 936.473888 NaN NaN NaN NaN NaN NaN NaN 116.12 1 111.63 111.13 112.13 -4.486 0 0 0 0.23508 1 22894 22894 2.7352 0 1 + 3294 16416 1846 1848 3670 3670 0.0031104013405638398 ALQGHQSVI 9 Unmodified _ALQGHQSVI_ 0 0 0 ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;CAMSAP1|p.V388Rfs*19|1|0.26|ENSG00000130559|chr9:135827468-135827469|-/G|frameshift_variant;CAMSAP1|p.P417Sfs*23|1|0.04|ENSG00000130559|chr9:135824855-135824856|-/A|frameshift_variant;CAMSAP1|p.Q633Sfs*8|1|0.28|ENSG00000130559|chr9:135822764-135822764|G/-|frameshift_variant;CAMSAP1|p.E781Afs*3|1|0.06|ENSG00000130559|chr9:135822319-135822320|-/G|frameshift_variant ENSG00000130559|ENST00000389532|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.22625732421875 3 318.178536 951.513779 -0.17922 -5.7024E-05 0.10728 3.4136E-05 -0.071936 -2.2889E-05 318.1785566376207 77.318 0.62123 77.318 76.981 77.602 0 28 17 2 0 0 0 0.87262 1 15035 15035 5.2969 1.3525 1 1508300 3295 3617 1847 1849 3671 3671 0.036083031289877 ALQGTSNWPP 10 Unmodified _ALQGTSNWPP_ 0 0 0 SPIB|p.Q72Rfs*108|1|0.29|ENSG00000269404|chr19:50422908-50422908|C/-|frameshift_variant SPIB|p.Q72Rfs*108|1|0.29|ENSG00000269404|chr19:50422908-50422908|C/-|frameshift_variant SPIB|p.Q72Rfs*108|1|0.29|ENSG00000269404|chr19:50422908-50422908|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.54876708984375 3 357.513696 1069.51926 NaN NaN NaN NaN NaN NaN NaN 18.785 1 17.15 16.65 17.65 -1.6351 0 0 0 0.22588 1 2799 2799 3.5871 0.30575 1 3296 25784 1848 1850 3672 3672 -0.012720180792030078 ALQIGQWN 8 Unmodified _ALQIGQWN_ 0 0 0 REV__ENSG00000146477|ENST00000275300|SLC22A3 REV__ENSG00000146477|ENST00000275300|SLC22A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2447204589844 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 121.95 1 117.42 116.92 117.92 -4.5305 0 0 0 0.21452 1 23478 23478 13.508 5.5977 1 + 3297 16893 1849 1851 3673 3673 0.009566315832330474 ALQIHLRS 8 Unmodified _ALQIHLRS_ 0 0 0 SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant;SALL1|p.V965Sfs*11|1|0.18|ENSG00000103449|chr16:51139330-51139331|-/G|frameshift_variant;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENSG00000103449|ENST00000251020|SALL1;ENSG00000165821|ENST00000537235|SALL2;nc|ENSG00000165821|Q9Y467|SALL2;nc|ENSG00000256463|Q9BXA9-3|SALL3;nc|ENSG00000256463|Q9BXA9-4|SALL3;nc|ENSG00000256463|Q9BXA9-2|SALL3;ENSG00000256463|ENST00000537592|SALL3 SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant;nc|ENSG00000256463|Q9BXA9-3|SALL3 nc|ENSG00000256463|Q9BXA9-3|SALL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1911315917969 3 313.190776 936.550499 NaN NaN NaN NaN NaN NaN NaN 111.82 1 107.59 107.09 108.09 -4.2289 0 0 0 0.21486 1 21526 21526 1.6526 0 1 3298 7937;2192 1850 1852 3674 3674 0.07968599745572646 ALQILDVSV 9 Unmodified _ALQILDVSV_ 0 0 0 TLR9|p.A759V|1|0.18|ENSG00000239732|chr3:52222040-52222040|G/A|missense_variant TLR9|p.A759V|1|0.18|ENSG00000239732|chr3:52222040-52222040|G/A|missense_variant TLR9|p.A759V|1|0.18|ENSG00000239732|chr3:52222040-52222040|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73248291015625 2 479.2844 956.554247 -0.012996 -6.2286E-06 0.14789 7.0884E-05 0.1349 6.4655E-05 479.2846915273413 107.08 0.41786 102.67 102.4 102.82 -4.4121 19 11 2 0 0 0 0.58921 1 20531 20531 8.1555 0 1 683100 3299 25856 1851 1853 3675 3675 0.07423224728768218 ALQILDVSV 9 Unmodified _ALQILDVSV_ 0 0 0 TLR9|p.A759V|1|0.18|ENSG00000239732|chr3:52222040-52222040|G/A|missense_variant TLR9|p.A759V|1|0.18|ENSG00000239732|chr3:52222040-52222040|G/A|missense_variant TLR9|p.A759V|1|0.18|ENSG00000239732|chr3:52222040-52222040|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.2844 956.554247 -0.38515 -0.0001846 0.78929 0.0003783 0.40414 0.0001937 479.2846880489479 106.89 0.48712 102.63 102.35 102.84 -4.2638 -0.049205 0.00055044 NaN 8.1555 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1039000 3300 25856 1851 1853 0.07423224728768218 ALQMLVWAY 9 Unmodified _ALQMLVWAY_ 0 0 0 REV__nc|ENSG00000167107|Q96CM8-3|ACSF2 REV__nc|ENSG00000167107|Q96CM8-3|ACSF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7875366210938 2 547.788795 1093.56304 NaN NaN NaN NaN NaN NaN NaN 105.59 1 101.5 101 102 -4.0913 0 0 0 0.21408 1 20313 20313 19.439 3.5918 1 + 3301 17902 1852 1854 3676 3676 0.019998750935883436 ALQPNITY 8 Unmodified _ALQPNITY_ 0 0 0 nc|ENSG00000145817|Q969M3-3|YIPF5 nc|ENSG00000145817|Q969M3-3|YIPF5 nc|ENSG00000145817|Q969M3-3|YIPF5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2470703125 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 36.478 1 34.085 33.585 34.585 -2.3938 0 0 0 0.2074 1 6737 6737 19.439 5.9311 1 3302 12367 1853 1855 3677 3677 0.018580960061285623 ALQPNITY 8 Unmodified _ALQPNITY_ 0 0 0 nc|ENSG00000145817|Q969M3-3|YIPF5 nc|ENSG00000145817|Q969M3-3|YIPF5 nc|ENSG00000145817|Q969M3-3|YIPF5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2394104003906 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 36.531 1 34.137 33.637 34.637 -2.3938 0 0 0 0.2074 1 6747 6747 19.439 5.9311 1 3303 12367 1853 1855 3678 3678 0.018580960061285623 ALQQNPLPRS 10 Unmodified _ALQQNPLPRS_ 0 0 0 ENST00000461940.5_1_7:150269330-150269408:+|nuORF ENST00000461940.5_1_7:150269330-150269408:+|nuORF ENST00000461940.5_1_7:150269330-150269408:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2227478027344 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 56.893 1 56.893 56.393 57.393 0 0 0 0 0.22588 1 10869 10869 8.4443 0.83535 1 3304 10079 1854 1856 3679 3679 0.058153351118335195 ALQRISEY 8 Unmodified _ALQRISEY_ 0 0 0 nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46 nc|ENSG00000145833|Q7L014|DDX46 nc|ENSG00000145833|Q7L014|DDX46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26495361328125 2 490.263999 978.513445 0.31515 0.0001545 -0.30977 -0.00015187 0.0053712 2.6333E-06 490.2638223387413 85.498 0.62528 81.584 81.285 81.91 -3.9136 42 17 3 0 0 0 0.64227 1 16214 16214 19.439 1.304 1 4113100 3305 4624 1855 1857 3680 3680 0.023328834091330464 ALQSLLPPL 9 Unmodified _ALQSLLPPL_ 0 0 0 REV__nc|ENSG00000204764|Q9H2T7-2|RANBP17 REV__nc|ENSG00000204764|Q9H2T7-2|RANBP17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 476.7756652832031 2 476.29731 950.580068 0.20539 9.7827E-05 0.021848 1.0406E-05 0.22724 0.00010823 476.2971827978881 104.6 2.123 104.6 103.44 105.57 0 82 60 2 0 0 0 0.51974 1 20342 20342 1.2148 0.69841 1 1602100 + 3306 19565 1856 1858 3681 3681 0.10280118971058982 ALQSLLPPL 9 Unmodified _ALQSLLPPL_ 0 0 0 REV__nc|ENSG00000204764|Q9H2T7-2|RANBP17 REV__nc|ENSG00000204764|Q9H2T7-2|RANBP17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 476.29731 950.580068 0.67452 0.00032127 -0.6133 -0.00029211 0.061223 2.9161E-05 476.29697721101127 108.73 1.539 104.54 104.04 105.58 -4.1826 -0.029899 -0.00028764 NaN 1.2148 73 43 2 NaN NaN NaN NaN 0 NaN NaN 0 1205400 + 3307 19565 1856 1858 0.10280118971058982 ALQTEPKAV 9 Unmodified _ALQTEPKAV_ 0 0 0 nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3;C2CD3|p.Q102Tfs*21|1|0.31|ENSG00000168014|chr11:74168365-74168366|-/T|frameshift_variant;ENST00000541922.1_1_11:73872564-73881837:-|nuORF;ENST00000544293.1_1_11:73879278-73881837:-|nuORF;C2CD3|p.I477Nfs*12|2|0.31|ENSG00000168014|chr11:74118318-74118319|-/T|frameshift_variant;C2CD3|p.S563Afs*9|2|0.12|ENSG00000168014|chr11:74114427-74114427|T/-|frameshift_variant;ENST00000415191.6_1_11:73824618-73881837:-|nuORF nc|ENSG00000168014|Q4AC94-2|C2CD3 nc|ENSG00000168014|Q4AC94-2|C2CD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7326965332031 2 478.7742 955.533846 -0.35252 -0.00016878 0.0020749 9.9343E-07 -0.35044 -0.00016778 478.77419703201195 37.764 0.42178 35.295 35.116 35.537 -2.4688 20 11 2 0 0 0 0.35556 1 6998 6998 24.882 11.267 1 880850 3308 5868 1857 1859 3682 3682 0.0543005406894963 ALRDGGFEP 9 Unmodified _ALRDGGFEP_ 0 0 0 ARHGEF17|p.P617Lfs*10|1|0.32|ENSG00000110237|chr11:73310482-73310482|C/-|frameshift_variant;ARHGEF17|p.M1011Sfs*2|1|0.32|ENSG00000110237|chr11:73311670-73311670|T/-|frameshift_variant;ENSG00000110237|ENST00000263674|ARHGEF17 ARHGEF17|p.P617Lfs*10|1|0.32|ENSG00000110237|chr11:73310482-73310482|C/-|frameshift_variant ARHGEF17|p.P617Lfs*10|1|0.32|ENSG00000110237|chr11:73310482-73310482|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2414855957031 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 98.171 1 93.902 93.402 94.402 -4.2692 0 0 0 0.19162 1 18761 18761 0.12781 0.063827 1 3309 210 1858 1860 3683 3683 -0.015319761419959832 ALRFLKAP 8 Unmodified _ALRFLKAP_ 0 0 0 ENST00000434918.6_1_2:162849795-162888681:-|nuORF ENST00000434918.6_1_2:162849795-162888681:-|nuORF ENST00000434918.6_1_2:162849795-162888681:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2732238769531 2 458.292362 914.570172 NaN NaN NaN NaN NaN NaN NaN 135.85 1 135.85 135.35 136.35 0 0 0 0 0.22625 1 26915 26915 0.25148 0.18749 1 3310 9822 1859 1861 3684 3684 0.10946975756326083 ALRGKLEGLL 10 Unmodified _ALRGKLEGLL_ 0 0 0 ENSG00000178814|ENST00000618853|OPLAH;OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant;OPLAH|p.H870Tfs*28|1|0.64|ENSG00000178814|chr8:144054639-144054639|G/-|frameshift_variant ENSG00000178814|ENST00000618853|OPLAH ENSG00000178814|ENST00000618853|OPLAH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5635070800781 3 357.229119 1068.66553 -0.34663 -0.00012383 0.20054 7.164E-05 -0.14609 -5.2187E-05 357.2291301496038 74.462 0.56547 71.098 70.777 71.343 -3.3643 20 15 2 0 0 0 0.70283 1 14520 14520 10.899 0.58372 1 1317600 3311 6593 1860 1862 3685 3685 0.1339428415672046 ALRHTRCV 8 Unmodified _ALRHTRCV_ 0 0 0 REV__ENSG00000224420|ENST00000420022|ADM5 REV__ENSG00000224420|ENST00000420022|ADM5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72613525390625 2 478.266353 954.518153 NaN NaN NaN NaN NaN NaN NaN 155.15 1 150.37 149.87 150.87 -4.7791 0 0 0 0.2343 1 30841 30841 0.13829 0.015425 1 + 3312 19718 1861 1863 3686 3686 0.0390748907092302 ALRHVMDD 8 Unmodified _ALRHVMDD_ 0 0 0 nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-3|PCNX1 nc|ENSG00000100731|Q96RV3-3|PCNX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73553466796875 2 478.734551 955.45455 NaN NaN NaN NaN NaN NaN NaN 161.74 1 156.55 156.05 157.05 -5.1878 0 0 0 0.21323 1 31391 31391 14.582 0 1 3313 2010 1862 1864 3687 3687 -0.024959161568403943 ALRLFLVAL 9 Unmodified _ALRLFLVAL_ 0 0 0 REV__sp|P09712|US03_HCMVAMembraneglycoproteinUS3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US3PE=2SV=1 REV__sp|P09712|US03_HCMVAMembraneglycoproteinUS3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US3PE=2SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.48370361328125 3 339.226939 1014.65899 NaN NaN NaN NaN NaN NaN NaN 96.3 1 92.065 91.565 92.565 -4.2348 0 0 0 0.19624 1 18385 18385 0.073264 0 1 + 3314 24691 1863 1865 3688 3688 0.1522439099597932 ALRLRKRFLNF 11 Unmodified _ALRLRKRFLNF_ 0 0 0 ENST00000531325.5_1_1:85403252-85462600:-|nuORF;nc|ENSG00000153898|Q8IZK6-2|MCOLN2;ENSG00000153898|ENST00000370608|MCOLN2 ENST00000531325.5_1_1:85403252-85462600:-|nuORF ENST00000531325.5_1_1:85403252-85462600:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7423095703125 3 478.63325 1432.87792 -1.1393 -0.00054531 0.30453 0.00014576 -0.83478 -0.00039955 478.6333447360161 18.625 0.24674 17.11 16.986 17.233 -1.5148 15 6 3 0 0 0 0.96225 1 2773 2773 0.45452 0 1 299550 3315 4984 1864 1866 3689 3689 0.17879795287353772 ALRMLGRY 8 Unmodified _ALRMLGRY_ 0 0 0 tr|U7SKA6|U7SKA6_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02161PE=4SV=1 tr|U7SKA6|U7SKA6_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02161PE=4SV=1 tr|U7SKA6|U7SKA6_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02161PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26220703125 2 490.278929 978.543305 NaN NaN NaN NaN NaN NaN NaN 114.85 1 114.85 114.35 115.35 0 0 0 0 0.22684 1 22597 22597 0.68139 0 1 3316 25959 1865 1867 3690 3690 0.05317543873502473 ALRPRRLSI 9 Unmodified _ALRPRRLSI_ 0 0 0 REV__nc|ENSG00000143324|Q9UBH6-2|XPR1 REV__nc|ENSG00000143324|Q9UBH6-2|XPR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2831420898438 2 541.351274 1080.688 NaN NaN NaN NaN NaN NaN NaN 164.09 1 159.05 158.55 159.55 -5.0446 0 0 0 0.23508 1 31973 31973 4.3292 0.73274 1 + 3317 16715 1866 1868 3691 3691 0.15087928344996726 ALRRRRRTR 9 Unmodified _ALRRRRRTR_ 0 0 0 ENST00000468247.1_1_1:8716494-8763221:-|nuORF ENST00000468247.1_1_1:8716494-8763221:-|nuORF ENST00000468247.1_1_1:8716494-8763221:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 414.2488708496094 3 414.269305 1239.78609 NaN NaN NaN NaN NaN NaN NaN 95.882 1 95.882 95.382 96.382 0 0 0 0 0.23508 1 18781 18781 1.0715 0.29493 1 3318 10164 1867 1869 3692 3692 0.1757854971353936 ALRSFIQKR 9 Unmodified _ALRSFIQKR_ 0 0 0 REV__ENSG00000107371|ENST00000327304|EXOSC3 REV__ENSG00000107371|ENST00000327304|EXOSC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 560.1172485351562 2 559.843282 1117.67201 NaN NaN NaN NaN NaN NaN NaN 171.21 1 166.34 165.84 166.84 -4.873 0 0 0 0.19657 1 33923 33923 4.897 4.4887 1 + 3319 15081 1868 1870 3693 3693 0.1178822210808903 ALRTKKURK 9 Unmodified _ALRTKKURK_ 0 0 0 REV__nc|ENSG00000211448|Q92813-2|DIO2 REV__nc|ENSG00000211448|Q92813-2|DIO2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3168334960938 2 576.31736 1150.62017 NaN NaN NaN NaN NaN NaN NaN 35.571 1 35.571 35.071 36.071 0 0 0 0 0.19626 1 6534 6534 0 0 0 + 3320 19627 1869 1871 3694 3694 0.05088234859226759 ALRTSTIFI 9 Unmodified _ALRTSTIFI_ 0 0 0 REV__ENST00000553077.5_1_16:68156985-68160404:+|nuORF REV__ENST00000553077.5_1_16:68156985-68160404:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.20770263671875 3 341.206203 1020.59678 NaN NaN NaN NaN NaN NaN NaN 77.776 1 77.776 77.276 78.276 0 0 0 0 0.23508 1 15129 15129 1.1933 0 1 + 3321 22955 1870 1872 3695 3695 0.08730619856999056 ALSALKKAQ 9 Unmodified _ALSALKKAQ_ 0 0 0 ENSG00000139725|ENST00000267205|RHOF ENSG00000139725|ENST00000267205|RHOF ENSG00000139725|ENST00000267205|RHOF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.248291015625 2 465.292559 928.570566 NaN NaN NaN NaN NaN NaN NaN 132.49 1 127.64 127.14 128.14 -4.8527 0 0 0 0.14843 1 25449 25449 30.637 2.142 1 3322 4264 1871 1873 3696 3696 0.10342350685505153 ALSCFGSMNGG 11 Unmodified _ALSCFGSMNGG_ 0 0 0 ENST00000509248.1_1_4:139101937-139104441:-|nuORF;ENSG00000151012|ENST00000280612|SLC7A11 ENST00000509248.1_1_4:139101937-139104441:-|nuORF ENST00000509248.1_1_4:139101937-139104441:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2728881835938 2 522.217877 1042.4212 NaN NaN NaN NaN NaN NaN NaN 146 1 141.31 140.81 141.81 -4.6868 0 0 0 0.22632 1 28951 28951 0.0059557 0 1 3323 4845 1872 1874 3697 3697 -0.09831285991049299 ALSDRALAV 9 Unmodified _ALSDRALAV_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2381286621094 2 458.266542 914.51853 0.052952 2.4266E-05 0.36002 0.00016499 0.41297 0.00018925 458.2666479334994 56.884 0.70175 56.884 56.499 57.201 0 50 19 3 0 0 0 0.078741 1 10882 10882 79.596 2.7715 1 9234300 + 3324 16401 1873 1875 3698 3698 0.05785187271760606 ALSEALTEL 9 Unmodified _ALSEALTEL_ 0 0 0 ENST00000582352.1_1_17:18236273-18236588:-|nuORF;nc|ENSG00000176974|P34896-4|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1 ENST00000582352.1_1_17:18236273-18236588:-|nuORF ENST00000582352.1_1_17:18236273-18236588:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 473.74774169921875 2 473.758215 945.501877 -0.10472 -4.9614E-05 0.01181 5.595E-06 -0.092915 -4.4019E-05 473.7581655997459 139.16 0.62521 139.16 138.81 139.43 0 29 17 2 0 0 0 9.7194E-07 1 27645 27645 74.216 31.983 1 4419500 3325 6490 1874 1876 3699 3699 0.026946415951329072 ALSEALTEL 9 Unmodified _ALSEALTEL_ 0 0 0 ENST00000582352.1_1_17:18236273-18236588:-|nuORF;nc|ENSG00000176974|P34896-4|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1 ENST00000582352.1_1_17:18236273-18236588:-|nuORF ENST00000582352.1_1_17:18236273-18236588:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 474.25018310546875 2 473.758215 945.501877 0.031353 1.4854E-05 -0.12385 -5.8673E-05 -0.092493 -4.3819E-05 473.7581288020723 143.68 0.62578 139.02 138.72 139.34 -4.656 30 17 2 0 0 0 8.5224E-05 1 28423 28423 81.552 58.931 1 6464500 3326 6490 1874 1876 3700 3700 0.026946415951329072 ALSEALTEL 9 Unmodified _ALSEALTEL_ 0 0 0 ENST00000582352.1_1_17:18236273-18236588:-|nuORF;nc|ENSG00000176974|P34896-4|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1 ENST00000582352.1_1_17:18236273-18236588:-|nuORF ENST00000582352.1_1_17:18236273-18236588:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 473.758215 945.501877 0.057215 2.7106E-05 -0.019294 -9.1409E-06 0.03792 1.7965E-05 473.7581781658716 144.22 0.82863 139.15 138.66 139.49 -5.0671 0.035489 4.4654E-05 NaN 74.216 37 23 2 NaN NaN NaN NaN 0 NaN NaN 0 7057100 3327 6490 1874 1876 0.026946415951329072 ALSEALTEL 9 Unmodified _ALSEALTEL_ 0 0 0 ENST00000582352.1_1_17:18236273-18236588:-|nuORF;nc|ENSG00000176974|P34896-4|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1 ENST00000582352.1_1_17:18236273-18236588:-|nuORF ENST00000582352.1_1_17:18236273-18236588:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 473.758215 945.501877 0.30578 0.00014487 -0.1729 -8.1914E-05 0.13288 6.2951E-05 473.75796541635606 144.06 0.69986 139.11 138.81 139.51 -4.9445 0.00043009 -0.00010089 NaN 74.216 37 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7976000 3328 6490 1874 1876 0.026946415951329072 ALSEEVPE 8 Unmodified _ALSEEVPE_ 0 0 0 REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2146911621094 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 100.39 1 100.39 99.889 100.89 0 0 0 0 0.21486 1 19697 19697 9.3474 0.75416 1 + 3329 17933 1875 1877 3701 3701 -0.028581933643749835 ALSELATAV 9 Unmodified _ALSELATAV_ 0 0 0 nc|nan|Q9BWL3-4|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43 nc|nan|Q9BWL3-4|C1orf43 nc|nan|Q9BWL3-4|C1orf43 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2164306640625 2 437.74765 873.480748 -0.062226 -2.7239E-05 0.32661 0.00014297 0.26438 0.00011573 437.7476431521206 116.11 0.62589 111.63 111.34 111.97 -4.486 28 17 2 0 0 0 0.18739 1 22920 22920 53.576 11.481 1 2084600 3330 4506 1876 1878 3702 3702 0.03894676286279264 ALSELATAV 9 Unmodified _ALSELATAV_ 0 0 0 nc|nan|Q9BWL3-4|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43 nc|nan|Q9BWL3-4|C1orf43 nc|nan|Q9BWL3-4|C1orf43 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2147216796875 2 437.74765 873.480748 0.26294 0.0001151 -0.27539 -0.00012055 -0.01245 -5.4499E-06 437.7474038678113 116.44 0.58714 111.86 111.49 112.08 -4.5815 23 16 2 0 0 0 0.49001 1 22342 22342 36.044 5.8194 1 1547100 3331 4506 1876 1878 3703 3703 0.03894676286279264 ALSELATAV 9 Unmodified _ALSELATAV_ 0 0 0 nc|nan|Q9BWL3-4|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43 nc|nan|Q9BWL3-4|C1orf43 nc|nan|Q9BWL3-4|C1orf43 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2146911621094 2 437.74765 873.480748 0.31961 0.00013991 -0.24443 -0.000107 0.075177 3.2909E-05 437.7474439645342 116.15 0.66811 111.79 111.46 112.13 -4.3585 30 18 2 0 0 0 0.13419 1 22357 22357 60.39 20.432 1 2257100 3332 4506 1876 1878 3704 3704 0.03894676286279264 ALSERAVAV 9 Unmodified _ALSERAVAV_ 0 0 0 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23858642578125 2 458.266542 914.51853 -0.1324 -6.0674E-05 0.61491 0.00028179 0.48251 0.00022112 458.26676096852174 59.579 0.83888 56.646 56.261 57.1 -2.9333 57 23 4 0 0 0 0.12694 1 11420 11420 67.838 14.005 1 8476200 3333 2833 1877 1879 3705 3705 0.05785187271760606 ALSERAVAV 9 Unmodified _ALSERAVAV_ 0 0 0 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23785400390625 2 458.266542 914.51853 0.035181 1.6122E-05 0.3257 0.00014926 0.36088 0.00016538 458.2666344042214 60.003 0.7741 56.689 56.312 57.086 -3.3139 55 21 4 0 0 0 0.13904 1 11112 11112 45.74 5.5007 1 8062000 3334 2833 1877 1879 3706 3706 0.05785187271760606 ALSERAVAV 9 Unmodified _ALSERAVAV_ 0 0 0 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2247619628906 2 458.266542 914.51853 0.13314 6.1012E-05 0.24445 0.00011202 0.37759 0.00017304 458.2665683946792 59.895 0.77348 56.671 56.361 57.134 -3.2237 54 21 4 0 0 0 0.088942 1 11165 11165 59.368 5.9644 1 7765400 3335 2833 1877 1879 3707 3707 0.05785187271760606 ALSFVQRT 8 Unmodified _ALSFVQRT_ 0 0 0 ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;ENST00000392357.1_1_17:80010993-80011926:+|nuORF ENSG00000169727|ENST00000578552|GPS1 ENSG00000169727|ENST00000578552|GPS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.1828308105469 3 307.843265 920.507966 -0.53109 -0.00016349 0.22109 6.8061E-05 -0.31 -9.5432E-05 307.8433274963124 39.129 0.41442 36.724 36.475 36.89 -2.4049 17 11 2 0 0 0 8448 1 6973 6973 1.7423 0 1 912580 3336 6003 1878 1880 3708 3708 0.044532046173458184 ALSGLDMVGV 10 Unmodified _ALSGLDMVGV_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000583562.1_1_17:62500076-62500226:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2351989746094 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 152.6 1 152.6 152.1 153.1 0 0 0 0 0.22535 1 30568 30568 20.454 8.8133 1 3337 803 1879 1881 3709 3709 0.013190054429401243 ALSGLDMVGV 10 Unmodified _ALSGLDMVGV_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000583562.1_1_17:62500076-62500226:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2548828125 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 152.75 1 152.75 152.25 153.25 0 0 0 0 0.11401 1 30599 30599 42.095 7.9921 1 3338 803 1879 1881 3710 3710 0.013190054429401243 ALSGLDMVGV 10 Unmodified _ALSGLDMVGV_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000583562.1_1_17:62500076-62500226:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2547912597656 2 481.254785 960.495018 0.19762 9.5103E-05 -0.14512 -6.984E-05 0.052495 2.5264E-05 481.2546874343915 157.55 0.67142 152.76 152.48 153.16 -4.7885 24 18 2 0 0 0 0.14602 5 31348 31298;31315;31348;31383;31399 48.346 19.859 1 1427100 3339 803 1879 1881 3711;3712;3713;3714;3715 3713 0.013190054429401243 ALSGLDMVGV 10 Unmodified _ALSGLDMVGV_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000583562.1_1_17:62500076-62500226:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7724609375 2 481.254785 960.495018 0.20125 9.6852E-05 0.084742 4.0782E-05 0.28599 0.00013763 481.2547082277753 158.18 0.53432 152.91 152.72 153.26 -5.2748 23 14 2 0 0 0 0.086838 3 30720 30687;30720;30728 42.095 31.256 1 1416200 3340 803 1879 1881 3716;3717;3718 3717 0.013190054429401243 ALSGLDMVGV 10 Unmodified _ALSGLDMVGV_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000583562.1_1_17:62500076-62500226:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.255126953125 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 158.58 1 153.31 152.81 153.81 -5.2748 0 0 0 0.22569 1 30778 30778 15.847 8.558 1 3341 803 1879 1881 3719 3719 0.013190054429401243 ALSGLDMVGV 10 Unmodified _ALSGLDMVGV_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000583562.1_1_17:62500076-62500226:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2549133300781 2 481.254785 960.495018 0.35991 0.00017321 -0.33465 -0.00016105 0.025254 1.2154E-05 481.2547014183136 158.3 0.53458 153.02 152.62 153.15 -5.2712 22 14 2 0 0 0 0.26486 2 30708 30708;30728 39.957 13.074 1 942240 3342 803 1879 1881 3720;3721 3720 0.013190054429401243 ALSIKTSSL 9 Unmodified _ALSIKTSSL_ 0 0 0 PTK2B|p.F436Lfs*19|1|0.3|ENSG00000120899|chr8:27436310-27436310|T/-|frameshift_variant;ENST00000397497.8_2_8:27288866-27309154:+|nuORF;PTK2B|p.E904Rfs*7|1|0.19|ENSG00000120899|chr8:27454262-27454262|C/-|frameshift_variant;PTK2B|p.E904Rfs*23|1|0.36|ENSG00000120899|chr8:27454261-27454262|-/C|frameshift_variant;nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B PTK2B|p.F436Lfs*19|1|0.3|ENSG00000120899|chr8:27436310-27436310|T/-|frameshift_variant PTK2B|p.F436Lfs*19|1|0.3|ENSG00000120899|chr8:27436310-27436310|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2440185546875 2 460.276575 918.538597 NaN NaN NaN NaN NaN NaN NaN 122.76 1 118.17 117.67 118.67 -4.5926 0 0 0 0.21065 1 23630 23630 20.454 2.3186 1 3343 3161 1880 1882 3722 3722 0.07606938211711167 ALSIQKLRER 10 Unmodified _ALSIQKLRER_ 0 0 0 ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.25262451171875 3 405.250695 1212.73025 NaN NaN NaN NaN NaN NaN NaN 43.106 1 40.455 39.955 40.955 -2.651 0 0 0 0.22588 1 7775 7775 3.3196 0.24738 1 3344 6614 1881 1883 3723 3723 0.13239858962697326 ALSKEGIVAL 10 Unmodified _ALSKEGIVAL_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 502.2840270996094 2 500.8055 999.596446 0.4179 0.00020929 -0.17507 -8.7674E-05 0.24283 0.00012161 500.805333572547 106.46 1.3903 106.46 105.95 107.34 0 113 39 4 0 0 0 0.25854 1 20920 20920 50.648 34.373 1 48408000 3345 4668 1882 1884 3724 3724 0.09663200137140393 ALSKEGIVAL 10 Unmodified _ALSKEGIVAL_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 500.8055 999.596446 0.4179 0.00020929 -0.17507 -8.7674E-05 0.24283 0.00012161 500.805333572547 106.46 1.3903 106.46 105.95 107.34 0 0 0 NaN 50.648 113 39 4 NaN NaN NaN NaN 0 NaN NaN 0 48408000 3346 4668 1882 1884 0.09663200137140393 ALSKFIAV 8 Unmodified _ALSKFIAV_ 0 0 0 IL17RD|p.A470T|1|0.73|ENSG00000144730|chr3:57098295-57098295|C/T|missense_variant;nc|ENSG00000144730|Q8NFM7-2|IL17RD;ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD IL17RD|p.A470T|1|0.73|ENSG00000144730|chr3:57098295-57098295|C/T|missense_variant IL17RD|p.A470T|1|0.73|ENSG00000144730|chr3:57098295-57098295|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25164794921875 2 424.765646 847.516739 0.0015879 6.7448E-07 0.15302 6.4999E-05 0.15461 6.5674E-05 424.76577560280185 130.95 0.69566 126.12 125.81 126.51 -4.8355 26 19 2 0 0 0 0.069961 1 25135 25135 69.105 0 1 1581800 3347 4573 1883 1885 3725 3725 0.08688178253805745 ALSLAHTYGL 10 Unmodified _ALSLAHTYGL_ 0 0 0 ENSG00000151779|ENST00000281513|NBAS;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant ENSG00000151779|ENST00000281513|NBAS ENSG00000151779|ENST00000281513|NBAS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6988525390625 2 523.287474 1044.5604 -0.25496 -0.00013342 0.49608 0.00025959 0.24111 0.00012617 523.2877165093659 74.976 1.0079 71.611 71.163 72.171 -3.3643 57 28 3 0 0 0 0.83242 1 14576 14576 10.074 3.8681 1 10082000 3348 4887 1884 1886 3726 3726 0.039897429602888224 ALSNMEEAP 9 Unmodified _ALSNMEEAP_ 0 0 0 ENST00000333891.13_1_7:82792077-82792236:-|nuORF ENST00000333891.13_1_7:82792077-82792236:-|nuORF ENST00000333891.13_1_7:82792077-82792236:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24578857421875 2 481.2184 960.422247 0.65272 0.0003141 0.18031 8.677E-05 0.83303 0.00040087 481.2199888445904 104.43 0.77892 100.37 99.983 100.76 -4.0543 60 21 4 0 0 0 0.54354 1 20009 20009 16.942 6.8684 1 4790200 3349 8793 1885 1887 3727 3727 -0.0595474835049572 ALSNVIHKV 9 Unmodified _ALSNVIHKV_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2650451660156 2 490.798009 979.581465 -0.048677 -2.3891E-05 0.017897 8.7838E-06 -0.03078 -1.5107E-05 490.79790409285494 57.466 0.41002 57.466 57.237 57.647 0 17 11 2 0 0 0 0.66788 1 10974 10974 29.082 9.8246 1 719430 3350 7665 1886 1888 3728 3728 0.09085753059810031 ALSNVIHKV 9 Unmodified _ALSNVIHKV_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2642517089844 2 490.798009 979.581465 0.080011 3.9269E-05 -1.1125 -0.00054599 -1.0325 -0.00050672 490.79767459895436 59.849 0.4938 56.916 56.676 57.17 -2.9333 18 13 2 0 0 0 0.77734 1 11542 11542 19.257 7.6167 1 849230 3351 7665 1886 1888 3729 3729 0.09085753059810031 ALSNVIHKV 9 Unmodified _ALSNVIHKV_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2643127441406 2 490.798009 979.581465 -0.087526 -4.2957E-05 -0.29587 -0.00014521 -0.38339 -0.00018817 490.7976321582426 60.328 0.53254 57.104 56.709 57.242 -3.2237 19 14 2 0 0 0 0.62921 1 11273 11273 30.637 8.8899 1 1004500 3352 7665 1886 1888 3730 3730 0.09085753059810031 ALSPNNHEV 9 Unmodified _ALSPNNHEV_ 0 0 0 ENSG00000241685|ENST00000262942|ARPC1A ENSG00000241685|ENST00000262942|ARPC1A ENSG00000241685|ENST00000262942|ARPC1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26885986328125 2 490.743431 979.472308 0.22224 0.00010906 -0.22238 -0.00010913 -0.00014205 -6.9712E-08 490.74332344779845 29.935 1.1571 29.935 29.398 30.555 0 95 32 5 0 0 0 0.021579 1 5330 5330 122.18 64.708 1 72916000 3353 7855 1887 1889 3731 3731 -0.01824877630338051 ALSPNNHEV 9 Unmodified _ALSPNNHEV_ 0 0 0 ENSG00000241685|ENST00000262942|ARPC1A ENSG00000241685|ENST00000262942|ARPC1A ENSG00000241685|ENST00000262942|ARPC1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25250244140625 2 490.743431 979.472308 0.31793 0.00015602 -0.26268 -0.00012891 0.05525 2.7114E-05 490.74330873348276 32.105 0.92096 29.875 29.373 30.294 -2.2305 74 25 4 0 0 0 0.0029765 1 5820 5820 134.3 66.952 1 55157000 3354 7855 1887 1889 3732 3732 -0.01824877630338051 ALSPNNHEV 9 Unmodified _ALSPNNHEV_ 0 0 0 ENSG00000241685|ENST00000262942|ARPC1A ENSG00000241685|ENST00000262942|ARPC1A ENSG00000241685|ENST00000262942|ARPC1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2754211425781 2 490.743431 979.472308 0.35347 0.00017346 -0.27128 -0.00013313 0.082184 4.0331E-05 490.7432951439247 31.973 1.4708 29.947 29.409 30.879 -2.0264 114 41 5 0 0 0 0.0029765 1 5503 5503 134.3 66.952 1 65890000 3355 7855 1887 1889 3733 3733 -0.01824877630338051 ALSRAALPY 9 Unmodified _ALSRAALPY_ 0 0 0 REV__nc|ENSG00000144045|Q8TE96-3|DQX1 REV__nc|ENSG00000144045|Q8TE96-3|DQX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77838134765625 2 481.276909 960.539266 -0.24277 -0.00011684 0.50743 0.00024421 0.26466 0.00012737 481.277128205733 57.277 1.9408 57.277 56.536 58.477 0 96 55 2 0 0 0 0.64382 1 10940 10940 10.074 2.7847 1 1919100 + 3356 16767 1888 1890 3734 3734 0.05741777651405755 ALSRLKMRL 9 Unmodified _ALSRLKMRL_ 0 0 0 REV__ENSG00000163898|ENST00000296252|LIPH REV__ENSG00000163898|ENST00000296252|LIPH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.786376953125 2 544.342061 1086.66957 0.44469 0.00024206 0.39475 0.00021488 0.83945 0.00045695 544.3428200079605 151.09 0.10695 145.91 145.82 145.93 -5.1759 4 2 2 0 0 0 0.87511 1 29278 29278 3.9444 0 1 523500 + 3357 17626 1889 1891 3735 3735 0.12970050378771703 ALSSHFWM 8 Unmodified _ALSSHFWM_ 0 0 0 chrX:51834426-51894269|158|16.47|0.03|8.96|+|0|TE_info:LTR52,LTR52_dup626,ERVL,LTR,donor,+,51834145,51834426|None,MAGED1|4 chrX:51834426-51894269|158|16.47|0.03|8.96|+|0|TE_info:LTR52,LTR52_dup626,ERVL,LTR,donor,+,51834145,51834426|None,MAGED1|4 chrX:51834426-51894269|158|16.47|0.03|8.96|+|0|TE_info:LTR52,LTR52_dup626,ERVL,LTR,donor,+,51834145,51834426|None,MAGED1|4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2542419433594 2 489.728738 977.442923 0.20697 0.00010136 1.8017 0.00088235 2.0087 0.00098371 489.729608913066 32.399 0.34773 30.25 30.036 30.384 -2.1483 13 9 2 0 0 0 0.72861 1 5628 5628 10.183 1.438 1 332110 3358 554 1890 1892 3736 3736 -0.046701131801683005 ALSSHFWM 8 Unmodified _ALSSHFWM_ 0 0 0 chrX:51834426-51894269|158|16.47|0.03|8.96|+|0|TE_info:LTR52,LTR52_dup626,ERVL,LTR,donor,+,51834145,51834426|None,MAGED1|4 chrX:51834426-51894269|158|16.47|0.03|8.96|+|0|TE_info:LTR52,LTR52_dup626,ERVL,LTR,donor,+,51834145,51834426|None,MAGED1|4 chrX:51834426-51894269|158|16.47|0.03|8.96|+|0|TE_info:LTR52,LTR52_dup626,ERVL,LTR,donor,+,51834145,51834426|None,MAGED1|4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.728738 977.442923 0.20697 0.00010136 1.8017 0.00088235 2.0087 0.00098371 489.729608913066 32.399 0.34773 30.25 30.036 30.384 -2.1483 -0.020878 1.8919E-05 NaN 10.183 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 332110 3359 554 1890 1892 -0.046701131801683005 ALSSSSIRV 9 Unmodified _ALSSSSIRV_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2388610839844 2 460.263999 918.513445 -0.11361 -5.2293E-05 0.15215 7.0031E-05 0.038539 1.7738E-05 460.2640449353591 68.336 0.75461 68.336 67.998 68.752 0 51 20 4 0 0 0 0.10265 1 13218 13218 63.961 18.261 1 9761500 3360 1115 1891 1893 3737 3737 0.05092883409156457 ALSSSSIRV 9 Unmodified _ALSSSSIRV_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24853515625 2 460.263999 918.513445 -0.21454 -9.8743E-05 0.39509 0.00018185 0.18056 8.3104E-05 460.2641175550005 71.271 0.63886 68.022 67.706 68.345 -3.2492 44 17 3 0 0 0 0.27332 1 13889 13889 51.63 17.228 1 7795400 3361 1115 1891 1893 3738 3738 0.05092883409156457 ALSSSSIRV 9 Unmodified _ALSSSSIRV_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2388000488281 2 460.263999 918.513445 0.26631 0.00012257 -0.11931 -5.4914E-05 0.147 6.7657E-05 460.26391366459495 71.692 0.59995 68.064 67.737 68.337 -3.6275 39 16 3 0 0 0 0.089388 1 13548 13548 75.761 19.584 1 8364100 3362 1115 1891 1893 3739 3739 0.05092883409156457 ALSSSSIRV 9 Unmodified _ALSSSSIRV_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24786376953125 2 460.263999 918.513445 0.35407 0.00016296 -0.19293 -8.8801E-05 0.16113 7.4163E-05 460.26386770860785 71.593 0.77031 68.076 67.753 68.523 -3.5166 47 21 3 0 0 0 0.053942 2 13589 13544;13589 69.105 29.155 1 8226200 3363 1115 1891 1893 3740;3741 3741 0.05092883409156457 ALSSTPQTL 9 Unmodified _ALSSTPQTL_ 0 0 0 REV__nc|ENSG00000186377|Q8N118-2|CYP4X1 REV__nc|ENSG00000186377|Q8N118-2|CYP4X1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2411804199219 2 459.250557 916.486562 0.37502 0.00017223 0.7193 0.00033034 1.0943 0.00050257 459.25096062619525 98.232 0.8399 98.232 97.949 98.789 0 50 23 3 0 0 0 0.54354 1 19282 19282 16.942 3.4344 1 2338300 + 3364 24211 1892 1894 3742 3742 0.024977747979505693 ALSSVIKEL 9 Unmodified _ALSSVIKEL_ 0 0 0 ENSG00000204899|ENST00000377818|MZT1 ENSG00000204899|ENST00000377818|MZT1 ENSG00000204899|ENST00000377818|MZT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2423095703125 2 480.292225 958.569897 0.020244 9.7229E-06 0.20355 9.7762E-05 0.22379 0.00010749 480.29223335045634 133.28 0.6936 128.64 128.3 128.99 -4.6399 44 19 3 0 0 0 0.039965 2 26300 26234;26300 76.825 17.772 1 4682500 3365 7619 1893 1895 3743;3744 3744 0.08895511245816579 ALSSVIKEL 9 Unmodified _ALSSVIKEL_ 0 0 0 ENSG00000204899|ENST00000377818|MZT1 ENSG00000204899|ENST00000377818|MZT1 ENSG00000204899|ENST00000377818|MZT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23602294921875 2 480.292225 958.569897 0.062966 3.0242E-05 0.082254 3.9506E-05 0.14522 6.9748E-05 480.2922808858366 133.6 0.72739 128.73 128.37 129.09 -4.8726 46 20 3 0 0 0 0.039965 1 25694 25694 52.268 20.633 1 3746000 3366 7619 1893 1895 3745 3745 0.08895511245816579 ALSSVIKEL 9 Unmodified _ALSSVIKEL_ 0 0 0 ENSG00000204899|ENST00000377818|MZT1 ENSG00000204899|ENST00000377818|MZT1 ENSG00000204899|ENST00000377818|MZT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.292225 958.569897 0.16218 7.7895E-05 0.05545 2.6632E-05 0.21763 0.00010453 480.2921993576268 133.7 0.74704 128.88 128.56 129.3 -4.8175 0.13018 -5.459E-05 NaN 76.825 44 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4981300 3367 7619 1893 1895 0.08895511245816579 ALSYSYPQV 9 Unmodified _ALSYSYPQV_ 0 0 0 ENSG00000130675|ENST00000252971|MNX1 ENSG00000130675|ENST00000252971|MNX1 ENSG00000130675|ENST00000252971|MNX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.1864013671875 3 343.17468 1026.50221 NaN NaN NaN NaN NaN NaN NaN 81.628 1 77.94 77.44 78.44 -3.6879 0 0 0 0.23508 1 15555 15555 5.2969 0 1 3368 3624 1894 1896 3746 3746 -0.009979386850091032 ALTDFSGY 8 Unmodified _ALTDFSGY_ 0 0 0 ENST00000469079.5_1_21:33785131-33840206:+|nuORF;nc|ENSG00000166979|P58658-3|EVA1C;ENSG00000166979|ENST00000300255|EVA1C ENST00000469079.5_1_21:33785131-33840206:+|nuORF ENST00000469079.5_1_21:33785131-33840206:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23614501953125 2 437.203076 872.391599 NaN NaN NaN NaN NaN NaN NaN 95.625 1 95.625 95.125 96.125 0 0 0 0 0.21486 1 18732 18732 10.183 0.83596 1 3369 5774 1895 1897 3747 3747 -0.04970158673222613 ALTDFSGY 8 Unmodified _ALTDFSGY_ 0 0 0 ENST00000469079.5_1_21:33785131-33840206:+|nuORF;nc|ENSG00000166979|P58658-3|EVA1C;ENSG00000166979|ENST00000300255|EVA1C ENST00000469079.5_1_21:33785131-33840206:+|nuORF ENST00000469079.5_1_21:33785131-33840206:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2165222167969 2 437.203076 872.391599 NaN NaN NaN NaN NaN NaN NaN 99.782 1 95.65 95.15 96.15 -4.1326 0 0 0 0.21486 1 19607 19607 9.3474 0 1 3370 5774 1895 1897 3748 3748 -0.04970158673222613 ALTEHYKHHWF 11 Unmodified _ALTEHYKHHWF_ 0 0 0 ENSG00000159388|ENST00000290551|BTG2 ENSG00000159388|ENST00000290551|BTG2 ENSG00000159388|ENST00000290551|BTG2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2582092285156 3 490.242199 1467.70477 NaN NaN NaN NaN NaN NaN NaN 120.03 1 120.03 119.53 120.53 0 0 0 0 0.22632 1 23657 23657 0.0059557 0 1 3371 5205 1896 1898 3749 3749 -0.010376155597441539 ALTEKENQL 9 Unmodified _ALTEKENQL_ 0 0 0 REV__ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant REV__ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7020874023438 2 523.279846 1044.54514 0.40289 0.00021082 -2.1335 -0.0011164 -1.7306 -0.00090559 523.7798010955532 149.98 0.59915 144.86 144.65 145.24 -5.1204 29 16 3 0 0 0 0.52414 1 29082 29082 18.135 3.2967 1 1553100 + 3372 14218 1897 1899 3750 3750 0.02464831372435583 ALTMSSTHM 9 Unmodified _ALTMSSTHM_ 0 0 0 REV__ENST00000423961.1_1_7:27502029-27502443:+|nuORF REV__ENST00000423961.1_1_7:27502029-27502443:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2564697265625 2 489.722795 977.431037 0.2014 9.8629E-05 -0.29037 -0.0001422 -0.088972 -4.3572E-05 489.7225442601876 25.613 0.51302 23.978 23.752 24.265 -1.6347 35 14 3 0 0 0 0.86532 1 4263 4263 8.5933 8.5933 1 6098800 + 3373 21540 1898 1900 3751 3751 -0.0585809798566288 ALTMSSTHM 9 Unmodified _ALTMSSTHM_ 0 0 0 REV__ENST00000423961.1_1_7:27502029-27502443:+|nuORF REV__ENST00000423961.1_1_7:27502029-27502443:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2671203613281 2 489.722795 977.431037 -0.30764 -0.00015066 0.2804 0.00013732 -0.027243 -1.3342E-05 489.72278563718993 25.821 0.52302 23.899 23.671 24.194 -1.9222 25 14 2 0 0 0 0.66537 1 4270 4270 8.5933 0 1 2345900 + 3374 21540 1898 1900 3752 3752 -0.0585809798566288 ALTQAFRR 8 Unmodified _ALTQAFRR_ 0 0 0 nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF nc|ENSG00000183207|Q9Y230-2|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77886962890625 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 144.14 1 144.14 143.64 144.64 0 0 0 0 0.20896 1 28789 28789 18.135 0 1 3375 6835 1899 1901 3753 3753 0.06343715602793054 ALTQAFRR 8 Unmodified _ALTQAFRR_ 0 0 0 nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF nc|ENSG00000183207|Q9Y230-2|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76947021484375 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 149.05 1 144.34 143.84 144.84 -4.7095 0 0 0 0.2074 1 29600 29600 19.439 0.18201 1 3376 6835 1899 1901 3754 3754 0.06343715602793054 ALTSYVVKY 9 Unmodified _ALTSYVVKY_ 0 0 0 REV__ENSG00000116147|ENST00000367674|TNR REV__ENSG00000116147|ENST00000367674|TNR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2762451171875 2 522.292225 1042.5699 NaN NaN NaN NaN NaN NaN NaN 148.56 1 143.5 143 144 -5.0595 0 0 0 0.23508 1 28774 28774 12.532 1.0368 1 + 3377 15470 1900 1902 3755 3755 0.050315112458065414 ALTTSEPQA 9 Unmodified _ALTTSEPQA_ 0 0 0 REV__CON__Q3ZBS7 REV__CON__Q3ZBS7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 919.4649658203125 1 917.457453 916.450176 0.29127 0.00026722 -0.32521 -0.00029837 -0.033947 -3.1145E-05 917.4570892509793 54.092 0.9776 50.957 50.626 51.604 -3.1352 60 27 3 0 0 0 0.38188 1 10001 10001 26.884 0 1 37688000 + + 3378 13548 1901 1903 3756 3756 -0.011391020987616685 ALTVWRFFRD 10 Unmodified _ALTVWRFFRD_ 0 0 0 ENSG00000116237|ENST00000343813|ICMT ENSG00000116237|ENST00000343813|ICMT ENSG00000116237|ENST00000343813|ICMT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2159729003906 3 437.571657 1309.69314 0.5611 0.00024552 0.69982 0.00030622 1.2609 0.00055174 437.5720235205254 105.97 0.69469 101.88 101.5 102.19 -4.0913 44 18 3 0 0 0 0.75679 1 20315 20315 3.5871 0.74377 1 2455300 3379 2919 1902 1904 3757 3757 0.0506818741691859 ALTWKYYA 8 Unmodified _ALTWKYYA_ 0 0 0 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21;FBXO21|p.I169Ffs*11|3|0.25|ENSG00000135108|chr12:117177607-117177607|T/-|frameshift_variant;ENST00000549689.5_1_12:117612134-117624310:-|nuORF ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.1205139160156 3 339.179766 1014.51747 NaN NaN NaN NaN NaN NaN NaN 103.9 1 99.551 99.051 100.05 -4.346 0 0 0 0.21486 1 19904 19904 0.45834 0 1 3380 3901 1903 1905 3758 3758 0.010789729028374495 ALVAAHVADL 10 Unmodified _ALVAAHVADL_ 0 0 0 REV__nc|ENSG00000167483|Q86XR2-6|NIBAN3 REV__nc|ENSG00000167483|Q86XR2-6|NIBAN3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2583923339844 2 490.282192 978.549831 NaN NaN NaN NaN NaN NaN NaN 137.26 1 132.62 132.12 133.12 -4.6413 0 0 0 0.22552 1 27087 27087 18.135 0 1 + 3381 17928 1904 1906 3759 3759 0.059697603058339155 ALVEGEAALPA 11 Unmodified _ALVEGEAALPA_ 0 0 0 ENST00000504520.6_1_4:83821910-83822051:-|nuORF ENST00000504520.6_1_4:83821910-83822051:-|nuORF ENST00000504520.6_1_4:83821910-83822051:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2793579101562 2 520.784764 1039.55498 -0.63707 -0.00033177 0.2894 0.00015072 -0.34766 -0.00018106 520.7847906701843 56.396 0.66903 53.206 52.846 53.515 -3.1895 49 18 4 0 0 0 0.59903 2 10478 10442;10478 18.146 5.9057 1 20800000 3382 10656 1905 1907 3760;3761 3761 0.03678019377821329 ALVEGEAALPA 11 Unmodified _ALVEGEAALPA_ 0 0 0 ENST00000504520.6_1_4:83821910-83822051:-|nuORF ENST00000504520.6_1_4:83821910-83822051:-|nuORF ENST00000504520.6_1_4:83821910-83822051:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 520.784764 1039.55498 -0.39667 -0.00020658 0.11521 5.9998E-05 -0.28147 -0.00014658 520.7847768004115 56.084 0.64736 53.19 52.828 53.475 -2.8944 -0.0081696 0.00013523 NaN 18.146 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 22634000 3383 10656 1905 1907 0.03678019377821329 ALVEGEAALPA 11 Unmodified _ALVEGEAALPA_ 0 0 0 ENST00000504520.6_1_4:83821910-83822051:-|nuORF ENST00000504520.6_1_4:83821910-83822051:-|nuORF ENST00000504520.6_1_4:83821910-83822051:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 520.784764 1039.55498 0.064292 3.3482E-05 -0.4896 -0.00025498 -0.42531 -0.00022149 520.7844708926152 56.374 0.60909 53.198 52.936 53.545 -3.1761 0.00019929 -0.00049471 NaN 18.146 47 16 4 NaN NaN NaN NaN 0 NaN NaN 0 15104000 3384 10656 1905 1907 0.03678019377821329 ALVERRLADV 10 Unmodified _ALVERRLADV_ 0 0 0 ENSG00000125531|ENST00000370097|FNDC11 ENSG00000125531|ENST00000370097|FNDC11 ENSG00000125531|ENST00000370097|FNDC11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.211181640625 3 381.227779 1140.66151 NaN NaN NaN NaN NaN NaN NaN 123.93 1 119.34 118.84 119.84 -4.5926 0 0 0 0.22588 1 23852 23852 1.9064 1.1298 1 3385 3367 1906 1908 3762 3762 0.09680194662996655 ALVFQVRF 8 Unmodified _ALVFQVRF_ 0 0 0 ENST00000295956.8_1_3:58157024-58157315:+|nuORF ENST00000295956.8_1_3:58157024-58157315:+|nuORF ENST00000295956.8_1_3:58157024-58157315:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2646484375 2 490.28982 978.565087 NaN NaN NaN NaN NaN NaN NaN 127.11 1 127.11 126.61 127.61 0 0 0 0 0.23294 1 25089 25089 0.12286 0 1 3386 8499 1907 1909 3763 3763 0.07494671893709892 ALVKQLLRMY 10 Unmodified _ALVKQLLRMY_ 0 0 0 REV__ENSG00000179134|ENST00000610417|SAMD4B REV__ENSG00000179134|ENST00000610417|SAMD4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 412.2133483886719 3 412.249526 1233.72675 0.4225 0.00017418 0.40102 0.00016532 0.82352 0.0003395 412.2495810380113 102.67 0.61907 102.67 102.45 103.07 0 33 17 3 0 0 0 1.1313 1 20123 20123 0.84494 0.67294 1 1886100 + 3387 18642 1908 1910 3764 3764 0.11923472864509677 ALVKQLLRMY 10 Unmodified _ALVKQLLRMY_ 0 0 0 REV__ENSG00000179134|ENST00000610417|SAMD4B REV__ENSG00000179134|ENST00000610417|SAMD4B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 412.249526 1233.72675 -0.58002 -0.00023911 1.2033 0.00049607 0.6233 0.00025696 412.25000576319997 107.07 0.66426 102.75 102.3 102.96 -4.32 0.14874 0.00065612 NaN 0.84494 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1972400 + 3388 18642 1908 1910 0.11923472864509677 ALVKQLLRMY 10 Unmodified _ALVKQLLRMY_ 0 0 0 REV__ENSG00000179134|ENST00000610417|SAMD4B REV__ENSG00000179134|ENST00000610417|SAMD4B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 412.249526 1233.72675 -0.030707 -1.2659E-05 0.64644 0.0002665 0.61574 0.00025384 412.2498073750702 106.9 0.52284 102.49 102.27 102.79 -4.4121 -0.11519 -3.2594E-05 NaN 0.84494 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2091600 + 3389 18642 1908 1910 0.11923472864509677 ALVKQLLRMY 10 Unmodified _ALVKQLLRMY_ 0 0 0 REV__ENSG00000179134|ENST00000610417|SAMD4B REV__ENSG00000179134|ENST00000610417|SAMD4B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 412.249526 1233.72675 0.3155 0.00013007 0.32554 0.0001342 0.64104 0.00026427 412.24959877891155 106.59 0.69432 102.5 102.19 102.89 -4.0913 -0.10385 -0.00042948 NaN 0.84494 40 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1710100 + 3390 18642 1908 1910 0.11923472864509677 ALVLWLCL 8 Unmodified _ALVLWLCL_ 0 0 0 REV__OR4Q3|p.Y276Tfs*3|1|0.15|ENSG00000182652|chr14:19748250-19748250|T/-|frameshift_variant REV__OR4Q3|p.Y276Tfs*3|1|0.15|ENSG00000182652|chr14:19748250-19748250|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2593078613281 2 465.777699 929.540846 0.17583 8.1899E-05 -0.2265 -0.0001055 -0.050664 -2.3598E-05 465.77745162449327 130.32 2.2119 125.55 124.64 126.86 -4.7725 105 62 2 0 0 0 1.0035 1 25036 25036 6.3541 6.3541 1 2272200 + 3391 18793 1909 1911 3765 3765 0.07325695415806877 ALVPCASH 8 Unmodified _ALVPCASH_ 0 0 0 REV__ENST00000569028.2_1_16:34712339-34712507:-|nuORF REV__ENST00000569028.2_1_16:34712339-34712507:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 398.8887634277344 2 399.202356 796.390159 NaN NaN NaN NaN NaN NaN NaN 69.274 1 65.883 65.383 66.383 -3.3903 0 0 0 0.23366 1 13098 13098 0.62683 0 1 + 3392 23150 1910 1912 3766 3766 -0.016180712429900268 ALVQDLAKA 9 Unmodified _ALVQDLAKA_ 0 0 0 ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1 ENSG00000134057|ENST00000256442|CCNB1 ENSG00000134057|ENST00000256442|CCNB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2537536621094 2 464.776742 927.538931 0.33896 0.00015754 -0.72155 -0.00033536 -0.38259 -0.00017782 464.7763709669473 82.898 0.61685 82.898 82.602 83.219 0 45 17 3 0 0 0 0.058839 3 16165 16120;16165;16167 76.825 67.859 1 7971900 3393 3824 1911 1913 3767;3768;3769 3768 0.07226357931551775 ALVQDLAKA 9 Unmodified _ALVQDLAKA_ 0 0 0 ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1 ENSG00000134057|ENST00000256442|CCNB1 ENSG00000134057|ENST00000256442|CCNB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25341796875 2 464.776742 927.538931 -0.11924 -5.5419E-05 -0.47416 -0.00022038 -0.5934 -0.0002758 464.7764562132526 86.306 0.61311 82.579 82.224 82.837 -3.727 40 16 3 0 0 0 0.050901 1 16858 16858 85.642 25.252 1 6093500 3394 3824 1911 1913 3770 3770 0.07226357931551775 ALVQDLAKA 9 Unmodified _ALVQDLAKA_ 0 0 0 ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1 ENSG00000134057|ENST00000256442|CCNB1 ENSG00000134057|ENST00000256442|CCNB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2587890625 2 464.776742 927.538931 0.23386 0.00010869 -0.85305 -0.00039648 -0.61919 -0.00028778 464.7762988061777 86.562 0.76911 82.612 82.261 83.03 -3.9503 45 21 3 0 0 0 0.053446 1 16443 16443 75.761 20.987 1 5344900 3395 3824 1911 1913 3771 3771 0.07226357931551775 ALVQDLAKA 9 Unmodified _ALVQDLAKA_ 0 0 0 ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1 ENSG00000134057|ENST00000256442|CCNB1 ENSG00000134057|ENST00000256442|CCNB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2589416503906 2 464.776742 927.538931 0.087802 4.0808E-05 -0.70462 -0.00032749 -0.61682 -0.00028668 464.77634618458495 86.424 0.73855 82.696 82.31 83.048 -3.7289 44 20 3 0 0 0 0.18448 1 16467 16467 49.554 15.452 1 6686900 3396 3824 1911 1913 3772 3772 0.07226357931551775 ALVRNRSF 8 Unmodified _ALVRNRSF_ 0 0 0 ENST00000589318.5_1_19:14520811-14524032:-|nuORF;ENST00000590556.1_1_19:14521762-14522332:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A ENST00000589318.5_1_19:14520811-14524032:-|nuORF ENST00000589318.5_1_19:14520811-14524032:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7788391113281 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 95.211 1 95.211 94.711 95.711 0 0 0 0 0.21181 1 18651 18651 15.768 3.2367 1 3397 11587 1912 1914 3773 3773 0.06343715602804423 ALVTQLHKL 9 Unmodified _ALVTQLHKL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6;MROH6|p.R278H|1|0.16|ENSG00000204839|chr8:143570545-143570545|C/T|missense_variant ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.2186584472656 3 341.550082 1021.62842 -0.26013 -8.8847E-05 0.23033 7.8669E-05 -0.0298 -1.0178E-05 341.55008908440175 81.083 0.58835 77.526 77.203 77.791 -3.557 32 16 3 0 0 0 0.25976 1 15844 15844 18.614 11.984 1 1582500 3398 7612 1913 1915 3774 3774 0.11846612610929697 ALVTQLHKL 9 Unmodified _ALVTQLHKL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6;MROH6|p.R278H|1|0.16|ENSG00000204839|chr8:143570545-143570545|C/T|missense_variant ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 341.550082 1021.62842 0.023342 7.9724E-06 -0.13436 -4.5892E-05 -0.11102 -3.792E-05 341.5499891035976 81.399 0.52438 77.56 77.296 77.82 -3.8392 -0.016142 -0.00040077 NaN 18.614 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2061400 3399 7612 1913 1915 0.11846612610929697 ALVTQLHKL 9 Unmodified _ALVTQLHKL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6;MROH6|p.R278H|1|0.16|ENSG00000204839|chr8:143570545-143570545|C/T|missense_variant ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 341.550082 1021.62842 -0.87573 -0.0002991 0.67425 0.00023029 -0.20148 -6.8815E-05 341.55028125390356 81.33 0.5535 77.642 77.315 77.868 -3.6879 0.066038 0.00042778 NaN 18.614 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2134400 3400 7612 1913 1915 0.11846612610929697 ALVTRWSP 8 Unmodified _ALVTRWSP_ 0 0 0 ENST00000446176.6_1_9:132651045-132651225:-|nuORF ENST00000446176.6_1_9:132651045-132651225:-|nuORF ENST00000446176.6_1_9:132651045-132651225:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2512512207031 2 465.263802 928.513051 NaN NaN NaN NaN NaN NaN NaN 69.148 1 65.968 65.468 66.468 -3.1796 0 0 0 0.22665 1 13442 13442 0.68139 0 1 3401 9942 1914 1916 3775 3775 0.04593508479945285 ALVTSNSTH 9 Unmodified _ALVTSNSTH_ 0 0 0 ENSG00000196597|ENST00000481138|ZNF782 ENSG00000196597|ENST00000481138|ZNF782 ENSG00000196597|ENST00000481138|ZNF782 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2369079589844 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 86.606 1 82.656 82.156 83.156 -3.9503 0 0 0 0.21408 1 16487 16487 19.439 1.304 1 3402 7289 1915 1917 3776 3776 -0.005682800046201919 ALVTTSTWTS 10 Unmodified _ALVTTSTWTS_ 0 0 0 IRS4|p.K843Pfs*106|1|0.02|ENSG00000133124|chrX:108733819-108733820|-/GA|frameshift_variant IRS4|p.K843Pfs*106|1|0.02|ENSG00000133124|chrX:108733819-108733820|-/GA|frameshift_variant IRS4|p.K843Pfs*106|1|0.02|ENSG00000133124|chrX:108733819-108733820|-/GA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2836303710938 2 533.774396 1065.53424 0.23555 0.00012573 0.0073465 3.9214E-06 0.24289 0.00012965 533.7743523832123 74.803 0.77837 74.803 74.36 75.138 0 36 21 2 0 0 0 0.45952 1 14478 14478 26.884 1.4843 1 6084300 3403 11955 1916 1918 3777 3777 0.004094289981367183 ALVVRKHLLK 10 Unmodified _ALVVRKHLLK_ 0 0 0 REV__ENST00000474865.6_1_X:1561033-1571742:-|nuORF REV__ENST00000474865.6_1_X:1561033-1571742:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 588.8257446289062 2 588.9006 1175.78665 NaN NaN NaN NaN NaN NaN NaN 172.63 1 172.63 172.13 173.13 0 0 0 0 2.8426 1 35647 35647 0 0 1 + 3404 18076 1917 1919 3778 3778 0.2057853159003571 ALWAGAGGF 9 Unmodified _ALWAGAGGF_ 0 0 0 ENST00000378078.4_1_9:35756525-35756705:+|nuORF ENST00000378078.4_1_9:35756525-35756705:+|nuORF ENST00000378078.4_1_9:35756525-35756705:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2439880371094 2 425.216321 848.418088 NaN NaN NaN NaN NaN NaN NaN 91.215 1 91.215 90.715 91.715 0 0 0 0 0.23508 1 17822 17822 9.3474 2.9933 1 3405 9273 1918 1920 3779 3779 -0.012184249912365885 ALWDIETGQQT 11 Unmodified _ALWDIETGQQT_ 0 0 0 nc|ENSG00000172354|P62879-2|GNB2;ENSG00000172354|ENST00000303210|GNB2;ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1;ENST00000461893.5_1_1:1720336-1724757:-|nuORF nc|ENSG00000172354|P62879-2|GNB2;ENSG00000078369|ENST00000378609|GNB1 ENSG00000078369|ENST00000378609|GNB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7590942382812 2 631.306592 1260.59863 0.95607 0.00060358 -1.0743 -0.00067824 -0.11827 -7.4662E-05 631.8075269635095 136.09 0.59547 131.45 131.08 131.67 -4.6399 32 16 3 0 0 0 0.72897 1 26869 26869 31.268 25.536 1 3152500 3406 6212;1578 1919 1921 3780 3780 -0.021244159157276954 ALWDIETGQQT 11 Unmodified _ALWDIETGQQT_ 0 0 0 nc|ENSG00000172354|P62879-2|GNB2;ENSG00000172354|ENST00000303210|GNB2;ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1;ENST00000461893.5_1_1:1720336-1724757:-|nuORF nc|ENSG00000172354|P62879-2|GNB2;ENSG00000078369|ENST00000378609|GNB1 ENSG00000078369|ENST00000378609|GNB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7501220703125 2 631.306592 1260.59863 0.46427 0.0002931 -0.19165 -0.00012099 0.27262 0.00017211 631.3064219560952 136.2 0.53886 131.37 130.98 131.52 -4.8307 24 14 2 0 0 0 0.88538 1 26238 26238 14.405 5.0223 1 2469900 3407 6212;1578 1919 1921 3781 3781 -0.021244159157276954 ALWHTGHT 8 Unmodified _ALWHTGHT_ 0 0 0 nc|ENSG00000169231|P49746-2|THBS3;ENSG00000169231|ENST00000368378|THBS3 nc|ENSG00000169231|P49746-2|THBS3 nc|ENSG00000169231|P49746-2|THBS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53582763671875 2 461.730126 921.4457 0.52046 0.00024031 -0.79968 -0.00036924 -0.27922 -0.00012893 461.72905714141575 100.27 0.30519 100.27 100 100.31 0 11 8 2 0 0 0 0.72861 1 19617 19617 10.183 0 1 598440 3408 5972 1920 1922 3782 3782 -0.018165217310070148 ALWLGLSGY 9 Unmodified _ALWLGLSGY_ 0 0 0 REV__nc|ENSG00000204070|Q8N2H4-2|SYS1 REV__nc|ENSG00000204070|Q8N2H4-2|SYS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2623291015625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 82.043 1 78.486 77.986 78.986 -3.557 0 0 0 0.23411 1 16032 16032 13.508 0.97634 1 + 3409 19510 1921 1923 3783 3783 0.027349729028628644 ALYDATYET 9 Unmodified _ALYDATYET_ 0 0 0 nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000508046.1_1_5:68609355-68609532:-|nuORF;ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000165410|Q9Y281-3|CFL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6943969726562 2 523.73748 1045.46041 -0.16433 -8.6067E-05 0.41902 0.00021946 0.25469 0.00013339 523.737681308569 81.303 0.65945 77.746 77.442 78.101 -3.557 45 18 3 0 0 0 0.044114 1 15871 15871 81.552 49.823 1 11023000 3410 5626;6237 1922 1924 3784 3784 -0.06050539164198199 ALYDATYET 9 Unmodified _ALYDATYET_ 0 0 0 nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000508046.1_1_5:68609355-68609532:-|nuORF;ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000165410|Q9Y281-3|CFL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.692626953125 2 523.73748 1045.46041 -0.52316 -0.000274 0.62487 0.00032727 0.10171 5.3271E-05 523.7377801821307 81.608 0.62207 77.768 77.474 78.096 -3.8392 28 17 2 0 0 0 0.12935 2 15506 15506;15558 26.995 21.994 1 8337100 3411 5626;6237 1922 1924 3785;3786 3785 -0.06050539164198199 ALYDATYET 9 Unmodified _ALYDATYET_ 0 0 0 nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENST00000508046.1_1_5:68609355-68609532:-|nuORF;ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000165410|Q9Y281-3|CFL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.696533203125 2 523.73748 1045.46041 -0.1323 -6.9291E-05 0.32198 0.00016863 0.18968 9.934E-05 523.7375783833082 81.365 0.69777 77.677 77.42 78.118 -3.6879 44 19 3 0 0 0 0.064056 1 15544 15544 36.81 36.129 1 12289000 3412 5626;6237 1922 1924 3787 3787 -0.06050539164198199 ALYDENTKL 9 Unmodified _ALYDENTKL_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K142Rfs*26|1|0.07|ENSG00000162434|chr1:64873428-64873428|T/-|frameshift_variant;JAK1|p.N339Ifs*3|2|0.36|ENSG00000162434|chr1:64864947-64864947|T/-|frameshift_variant;JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2845458984375 2 533.774396 1065.53424 0.31869 0.00017011 2.2896 0.0012221 2.6083 0.0013922 533.7743089858906 78.799 1.1946 74.994 74.28 75.475 -3.8048 90 33 4 0 0 0 0.14943 1 14938 14938 53.404 7.7044 1 6201600 3413 5334 1923 1925 3788 3788 0.004094289981367183 ALYDENTKL 9 Unmodified _ALYDENTKL_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K142Rfs*26|1|0.07|ENSG00000162434|chr1:64873428-64873428|T/-|frameshift_variant;JAK1|p.N339Ifs*3|2|0.36|ENSG00000162434|chr1:64864947-64864947|T/-|frameshift_variant;JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2720336914062 2 533.774396 1065.53424 0.040611 2.1677E-05 2.0032 0.0010693 2.0438 0.0010909 533.7744466847232 78.705 1.1913 75.029 74.429 75.62 -3.676 91 33 4 0 0 0 0.27464 1 14979 14979 51.415 7.4334 1 7765800 3414 5334 1923 1925 3789 3789 0.004094289981367183 ALYDEVRTV 9 Unmodified _ALYDEVRTV_ 0 0 0 nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;ENST00000577300.1_1_18:2703698-2706469:+|nuORF;SMCHD1|p.K680Nfs*3|2|0.26|ENSG00000101596|chr18:2706442-2706442|A/-|frameshift_variant;SMCHD1|p.G727Rfs*21|1|0.3|ENSG00000101596|chr18:2707832-2707833|-/A|frameshift_variant;SMCHD1|p.M779Wfs*12|1|0.38|ENSG00000101596|chr18:2718226-2718226|A/-|frameshift_variant nc|ENSG00000101596|A6NHR9-2|SMCHD1 nc|ENSG00000101596|A6NHR9-2|SMCHD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2825927734375 2 533.282389 1064.55022 0.12211 6.5119E-05 -0.015316 -8.1678E-06 0.10679 5.6951E-05 533.282347207007 96.196 0.53368 92.146 91.828 92.362 -4.0496 35 15 3 0 0 0 0.46796 1 18891 18891 21.59 2.2282 1 2112600 3415 2076 1924 1926 3790 3790 0.02053135235018999 ALYDEVRTV 9 Unmodified _ALYDEVRTV_ 0 0 0 nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;ENST00000577300.1_1_18:2703698-2706469:+|nuORF;SMCHD1|p.K680Nfs*3|2|0.26|ENSG00000101596|chr18:2706442-2706442|A/-|frameshift_variant;SMCHD1|p.G727Rfs*21|1|0.3|ENSG00000101596|chr18:2707832-2707833|-/A|frameshift_variant;SMCHD1|p.M779Wfs*12|1|0.38|ENSG00000101596|chr18:2718226-2718226|A/-|frameshift_variant nc|ENSG00000101596|A6NHR9-2|SMCHD1 nc|ENSG00000101596|A6NHR9-2|SMCHD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2821655273438 2 533.282389 1064.55022 0.48881 0.00026068 0.20548 0.00010958 0.69429 0.00037025 533.2824471154511 96.395 0.53015 92.16 91.808 92.338 -4.2348 21 14 2 0 0 0 0.45059 1 18419 18419 22.658 0.91144 1 1190100 3416 2076 1924 1926 3791 3791 0.02053135235018999 ALYDNVEKL 9 Unmodified _ALYDNVEKL_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2861328125 2 532.784764 1063.55498 0.50659 0.0002699 -0.48193 -0.00025676 0.024659 1.3138E-05 532.7845987790776 102.11 0.69859 102.11 101.82 102.52 0 44 19 3 0 0 0 0.051332 4 20063 20017;20063;20086;20109 70.332 30.375 1 8248200 3417 26528 1925 1927 3792;3793;3794;3795 3793 0.025740193777892273 ALYDNVEKL 9 Unmodified _ALYDNVEKL_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2864379882812 2 532.784764 1063.55498 -0.28421 -0.00015142 0.37101 0.00019767 0.086807 4.6249E-05 532.7850594672417 106.39 0.70096 102.13 101.72 102.42 -4.2638 48 19 3 0 0 0 0.051332 4 20936 20892;20936;20961;20977 70.332 24.632 1 7355400 3418 26528 1925 1927 3796;3797;3798;3799 3797 0.025740193777892273 ALYDNVEKL 9 Unmodified _ALYDNVEKL_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.285400390625 2 532.784764 1063.55498 0.41719 0.00022227 -0.23652 -0.00012602 0.18067 9.6256E-05 532.7846710996317 106.47 0.61366 102.09 101.75 102.37 -4.3764 42 17 3 0 0 0 0.080883 3 20407 20407;20444;20457 61.602 17.744 1 7274100 3419 26528 1925 1927 3800;3801;3802 3800 0.025740193777892273 ALYDNVEKL 9 Unmodified _ALYDNVEKL_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2860107421875 2 532.784764 1063.55498 0.78095 0.00041608 -0.53347 -0.00028422 0.24748 0.00013185 532.7844674789001 106.2 0.68336 102.11 101.75 102.43 -4.0913 36 19 2 0 0 0 0.10699 2 20391 20391;20428 53.404 9.6316 1 8386500 3420 26528 1925 1927 3803;3804 3803 0.025740193777892273 ALYGKTEVV 9 Unmodified _ALYGKTEVV_ 0 0 0 ENSG00000177303|ENST00000321617|CASKIN2;nc|ENSG00000177303|Q8WXE0-2|CASKIN2;CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant ENSG00000177303|ENST00000321617|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2763977050781 2 490.276575 978.538597 -0.1386 -6.7954E-05 0.41164 0.00020182 0.27304 0.00013386 490.2766383753147 66.45 0.73233 66.45 66.102 66.834 0 44 20 3 0 0 0 0.031786 2 12857 12803;12857 79.596 37.757 1 15648000 3421 6506 1926 1928 3805;3806 3806 0.048469382116991255 ALYGKTEVV 9 Unmodified _ALYGKTEVV_ 0 0 0 ENSG00000177303|ENST00000321617|CASKIN2;nc|ENSG00000177303|Q8WXE0-2|CASKIN2;CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant ENSG00000177303|ENST00000321617|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.276611328125 2 490.276575 978.538597 0.019573 9.5963E-06 0.28491 0.00013968 0.30448 0.00014928 490.27669498392373 69.695 0.77594 66.515 66.119 66.895 -3.1796 59 21 4 0 0 0 0.022938 3 13558 13510;13558;13604 89.401 39.468 1 16971000 3422 6506 1926 1928 3807;3808;3809 3808 0.048469382116991255 ALYGKTEVV 9 Unmodified _ALYGKTEVV_ 0 0 0 ENSG00000177303|ENST00000321617|CASKIN2;nc|ENSG00000177303|Q8WXE0-2|CASKIN2;CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant ENSG00000177303|ENST00000321617|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.276611328125 2 490.276575 978.538597 0.47131 0.00023107 -0.14264 -6.9931E-05 0.32868 0.00016114 490.2764027169375 70.061 0.6617 66.481 66.106 66.768 -3.5798 54 18 4 0 0 0 0.039785 2 13220 13166;13220 75.761 33.921 1 14954000 3423 6506 1926 1928 3810;3811 3811 0.048469382116991255 ALYGKTEVV 9 Unmodified _ALYGKTEVV_ 0 0 0 ENSG00000177303|ENST00000321617|CASKIN2;nc|ENSG00000177303|Q8WXE0-2|CASKIN2;CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant ENSG00000177303|ENST00000321617|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2764587402344 2 490.276575 978.538597 0.10274 5.0369E-05 0.11624 5.6992E-05 0.21898 0.00010736 490.27657444947323 69.94 0.73526 66.473 66.078 66.814 -3.467 57 20 4 0 0 0 0.051332 2 13204 13204;13254 70.332 30.375 1 15800000 3424 6506 1926 1928 3812;3813 3812 0.048469382116991255 ALYIIWFIL 9 Unmodified _ALYIIWFIL_ 0 0 0 REV__nc|ENSG00000204361|Q96DL1-3|NXPE2 REV__nc|ENSG00000204361|Q96DL1-3|NXPE2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3251953125 2 576.346803 1150.67905 NaN NaN NaN NaN NaN NaN NaN 157.55 1 152.28 151.78 152.78 -5.2712 0 0 0 0.19634 1 30561 30561 0.029283 0 1 + 3425 19529 1927 1929 3814 3814 0.10974141935935222 ALYKDVML 8 Unmodified _ALYKDVML_ 0 0 0 ZNF616|p.E38D|1|0.15|ENSG00000204611|chr19:52123948-52123948|C/A|missense_variant;ZNF616|p.T184Rfs*45|1|0.06|ENSG00000204611|chr19:52116614-52116614|T/-|frameshift_variant;ENSG00000198464|ENST00000595962|ZNF480;ENSG00000204611|ENST00000600228|ZNF616 ZNF616|p.E38D|1|0.15|ENSG00000204611|chr19:52123948-52123948|C/A|missense_variant ZNF616|p.E38D|1|0.15|ENSG00000204611|chr19:52123948-52123948|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 476.8403625488281 2 476.762246 951.50994 NaN NaN NaN NaN NaN NaN NaN 144.32 1 139.65 139.15 140.15 -4.6694 0 0 0 0.20568 1 28574 28574 20.871 0 1 3426 7454 1928 1930 3815 3815 0.03224497310930019 ALYLLRLAL 9 Unmodified _ALYLLRLAL_ 0 0 0 ENST00000555173.1_1_12:57630374-57630868:-|nuORF;ENSG00000185633|ENST00000554503|NDUFA4L2 ENST00000555173.1_1_12:57630374-57630868:-|nuORF ENST00000555173.1_1_12:57630374-57630868:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6963500976562 2 523.342052 1044.66955 NaN NaN NaN NaN NaN NaN NaN 166.93 1 162.04 161.54 162.54 -4.8916 0 0 0 0.1966 1 32763 32763 0.073264 0 1 3427 7005 1929 1931 3816 3816 0.14900373650402798 ALYMATTEG 9 Unmodified _ALYMATTEG_ 0 0 0 REV__tr|U7SXB0|U7SXB0_FUSNURecombinationproteinRecROS=FusobacteriumnucleatumCTI-5OX=1316586GN=recRPE=3SV=1 REV__tr|U7SXB0|U7SXB0_FUSNURecombinationproteinRecROS=FusobacteriumnucleatumCTI-5OX=1316586GN=recRPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7236633300781 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 70.654 1 70.654 70.154 71.154 0 0 0 0 0.21848 1 13684 13684 18.135 4.6271 1 + 3428 25215 1930 1932 3817 3817 -0.04741560345121343 ALYMATTEG 9 Unmodified _ALYMATTEG_ 0 0 0 REV__tr|U7SXB0|U7SXB0_FUSNURecombinationproteinRecROS=FusobacteriumnucleatumCTI-5OX=1316586GN=recRPE=3SV=1 REV__tr|U7SXB0|U7SXB0_FUSNURecombinationproteinRecROS=FusobacteriumnucleatumCTI-5OX=1316586GN=recRPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7215270996094 2 478.723318 955.432083 -0.19293 -9.2361E-05 -1.2104 -0.00057943 -1.4033 -0.00067179 478.72229065546213 109.6 0.70671 105.15 104.78 105.49 -4.4518 26 19 2 0 0 0 0.44262 1 20983 20983 23.148 0 1 901920 + 3429 25215 1930 1932 3818 3818 -0.04741560345121343 ALYMATTEG 9 Unmodified _ALYMATTEG_ 0 0 0 REV__tr|U7SXB0|U7SXB0_FUSNURecombinationproteinRecROS=FusobacteriumnucleatumCTI-5OX=1316586GN=recRPE=3SV=1 REV__tr|U7SXB0|U7SXB0_FUSNURecombinationproteinRecROS=FusobacteriumnucleatumCTI-5OX=1316586GN=recRPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7359924316406 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 64.483 1 61.025 60.525 61.525 -3.4581 0 0 0 0.19684 1 12060 12060 0.40827 0 1 + 3430 25215 1930 1932 3819 3819 -0.04741560345121343 ALYPGQAQL 9 Unmodified _ALYPGQAQL_ 0 0 0 ENSG00000065600|ENST00000261455|PACC1;nc|ENSG00000065600|Q9H813-2|PACC1 ENSG00000065600|ENST00000261455|PACC1 ENSG00000065600|ENST00000261455|PACC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2542724609375 2 480.761092 959.507631 -0.44518 -0.00021402 1.36 0.00065383 0.91481 0.00043981 480.7617111715625 107.81 0.48888 103.49 103.31 103.8 -4.32 18 13 2 0 0 0 0.18739 1 21230 21230 53.576 37.728 1 700260 3431 1359 1931 1933 3820 3820 0.026257848974637454 ALYPHCEV 8 Unmodified _ALYPHCEV_ 0 0 0 REV__ENSG00000117448|ENST00000351829|AKR1A1 REV__ENSG00000117448|ENST00000351829|AKR1A1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1456298828125 3 311.149589 930.426938 NaN NaN NaN NaN NaN NaN NaN 107.33 1 103.01 102.51 103.51 -4.32 0 0 0 0.21486 1 21135 21135 7.2892 0 1 + 3432 15520 1932 1934 3821 3821 -0.04105819417077328 ALYRKMLDP 9 Unmodified _ALYRKMLDP_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.16839599609375 3 369.539077 1105.5954 -0.11628 -4.2972E-05 0.51706 0.00019107 0.40077 0.0001481 369.87309681268863 37.498 0.55836 37.498 37.192 37.751 0 27 15 3 0 0 0 0.58073 1 6910 6910 0.40827 0 1 1253300 3433 2885 1933 1935 3822 3822 0.046826624965888186 ALYSKGILL 9 Unmodified _ALYSKGILL_ 0 0 0 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2669677734375 2 489.305136 976.595718 0.18516 9.0602E-05 0.1196 5.8522E-05 0.30477 0.00014912 489.30504952423183 137.7 0.71169 132.78 132.37 133.08 -4.9216 34 19 2 0 0 0 0.10537 1 26473 26473 38.559 11.43 1 2982000 3434 2750 1934 1936 3823 3823 0.10648405488097978 ALYSKGILL 9 Unmodified _ALYSKGILL_ 0 0 0 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.305136 976.595718 0.18815 9.2063E-05 -0.11037 -5.4007E-05 0.077775 3.8056E-05 489.305119747721 133.08 0.65903 133.08 132.83 133.49 0 0.2342 -0.00022556 NaN 38.559 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 4055300 3435 2750 1934 1936 0.10648405488097978 ALYSKGILL 9 Unmodified _ALYSKGILL_ 0 0 0 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.305136 976.595718 0.14215 6.9555E-05 0.0098288 4.8093E-06 0.15198 7.4364E-05 489.3050965349524 137.4 0.67441 132.76 132.41 133.08 -4.6413 -0.084497 -0.00010793 NaN 38.559 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3333500 3436 2750 1934 1936 0.10648405488097978 ALYSKGILL 9 Unmodified _ALYSKGILL_ 0 0 0 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.305136 976.595718 -0.010247 -5.0139E-06 0.43158 0.00021117 0.42133 0.00020616 489.3053173122326 137.6 0.71378 132.76 132.41 133.13 -4.84 -0.08083 0.0003048 NaN 38.559 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2632100 3437 2750 1934 1936 0.10648405488097978 ALYSNQSF 8 Unmodified _ALYSNQSF_ 0 0 0 REV__nc|ENSG00000167766|P51522-2|ZNF83 REV__nc|ENSG00000167766|P51522-2|ZNF83 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2464599609375 2 465.2218 928.429047 NaN NaN NaN NaN NaN NaN NaN 132.25 1 127.4 126.9 127.9 -4.8527 0 0 0 0.21171 1 25402 25402 15.847 0 1 + 3438 17968 1935 1937 3824 3824 -0.0380306740761398 ALYSQVQKSGA 11 Unmodified _ALYSQVQKSGA_ 0 0 0 nc|ENSG00000115325|Q99704-3|DOK1;ENSG00000115325|ENST00000233668|DOK1 nc|ENSG00000115325|Q99704-3|DOK1 nc|ENSG00000115325|Q99704-3|DOK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3179931640625 2 576.306395 1150.59824 NaN NaN NaN NaN NaN NaN NaN 43.917 1 41.127 40.627 41.627 -2.79 0 0 0 0.20951 1 8239 8239 16.566 4.3252 1 3439 2847 1936 1938 3825 3825 0.028962091551193225 ALYSQVQKSGA 11 Unmodified _ALYSQVQKSGA_ 0 0 0 nc|ENSG00000115325|Q99704-3|DOK1;ENSG00000115325|ENST00000233668|DOK1 nc|ENSG00000115325|Q99704-3|DOK1 nc|ENSG00000115325|Q99704-3|DOK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3147583007812 2 576.306395 1150.59824 NaN NaN NaN NaN NaN NaN NaN 43.861 1 41.113 40.613 41.613 -2.7475 0 0 0 0.13346 1 7931 7931 30.703 14.554 1 3440 2847 1936 1938 3826 3826 0.028962091551193225 AMAARPHSI 9 Unmodified _AMAARPHSI_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.1636047363281 3 318.504366 952.49127 -0.64827 -0.00020648 0.19858 6.3248E-05 -0.44969 -0.00014323 318.5044449241893 26.511 0.54177 24.589 24.299 24.841 -1.9222 38 15 4 0 0 0 0.25976 1 4401 4401 31.728 22.184 1 3001100 3441 3233 1937 1939 3827 3827 0.013123804597285016 AMAEEIRRL 9 Unmodified _AMAEEIRRL_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.85504150390625 3 363.534214 1087.58081 0.24513 8.9115E-05 -0.42158 -0.00015326 -0.17644 -6.4143E-05 363.5340460576373 73.127 0.63986 69.5 69.2 69.839 -3.6275 41 17 3 0 0 0 0.10537 1 13776 13776 29.082 6.3453 1 8700900 3442 2941 1938 1940 3828 3828 0.04052590348442209 AMAEEIRRLSV 11 Unmodified _AMAEEIRRLSV_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2375793457031 3 425.567695 1273.68126 0.24475 0.00010416 0.014813 6.3039E-06 0.25957 0.00011046 425.9019977371719 102.33 0.58006 98.31 98.079 98.659 -4.0212 21 16 2 0 0 0 0.96065 1 19694 19694 9.5301 8.6046 1 1105900 3443 2941 1939 1941 3829 3829 0.05536202611438057 AMAEEIRRLSV 11 Unmodified _AMAEEIRRLSV_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 425.567695 1273.68126 -0.18159 -7.7278E-05 0.10532 4.482E-05 -0.07627 -3.2458E-05 425.5677193731379 102.45 0.38625 98.26 98.13 98.517 -4.1861 -0.020257 0.0001591 NaN 9.5301 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1073000 3444 2941 1939 1941 0.05536202611438057 AMAEEIRRLSV 11 Unmodified _AMAEEIRRLSV_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 425.567695 1273.68126 0.25794 0.00010977 -0.1932 -8.2219E-05 0.064736 2.755E-05 425.56752857533615 102.59 0.56044 98.271 98.01 98.57 -4.3208 -0.0095959 -0.00022202 NaN 9.5301 29 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1521600 3445 2941 1939 1941 0.05536202611438057 AMAPTSPQI 9 Unmodified _AMAPTSPQI_ 0 0 0 ENSG00000143436|ENST00000368830|MRPL9 ENSG00000143436|ENST00000368830|MRPL9 ENSG00000143436|ENST00000368830|MRPL9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23370361328125 2 458.233853 914.453153 NaN NaN NaN NaN NaN NaN NaN 76.612 1 76.612 76.112 77.112 0 0 0 0 0.19162 1 14889 14889 10.899 7.3119 1 3446 4486 1940 1942 3830 3830 -0.0074955024559812955 AMASHLTST 9 Unmodified _AMASHLTST_ 0 0 0 nc|ENSG00000239306|Q96PK6-5|RBM14;ENSG00000173933|ENST00000310092|RBM4 nc|ENSG00000239306|Q96PK6-5|RBM14 nc|ENSG00000239306|Q96PK6-5|RBM14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24810791015625 2 459.72111 917.427666 0.28972 0.00013319 0.48296 0.00022203 0.77269 0.00035522 459.7214843390999 26.899 0.69085 26.899 26.459 27.15 0 39 19 3 0 0 0 7.7434E-05 1 4730 4730 128.37 73.592 1 7497500 3447 6319 1941 1943 3831 3831 -0.034350247680322354 AMASHLTST 9 Unmodified _AMASHLTST_ 0 0 0 nc|ENSG00000239306|Q96PK6-5|RBM14;ENSG00000173933|ENST00000310092|RBM4 nc|ENSG00000239306|Q96PK6-5|RBM14 nc|ENSG00000239306|Q96PK6-5|RBM14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.247314453125 2 459.72111 917.427666 0.23368 0.00010743 0.33147 0.00015238 0.56515 0.00025981 459.7212379460259 28.57 0.69704 26.815 26.353 27.05 -1.7552 64 19 6 0 0 0 0.00071729 1 4843 4843 120.45 69.595 1 11440000 3448 6319 1941 1943 3832 3832 -0.034350247680322354 AMASHLTST 9 Unmodified _AMASHLTST_ 0 0 0 nc|ENSG00000239306|Q96PK6-5|RBM14;ENSG00000173933|ENST00000310092|RBM4 nc|ENSG00000239306|Q96PK6-5|RBM14 nc|ENSG00000239306|Q96PK6-5|RBM14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2405700683594 2 459.72111 917.427666 0.36068 0.00016581 -0.2028 -9.3232E-05 0.15788 7.2579E-05 459.7211260437691 28.72 0.97364 26.724 26.31 27.283 -1.9962 49 27 3 0 0 0 1.3328E-06 1 4847 4847 141.83 77.59 1 7459100 3449 6319 1941 1943 3833 3833 -0.034350247680322354 AMCYYCCCS 9 Unmodified _AMCYYCCCS_ 0 0 0 REV__ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant REV__ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.694091796875 2 523.64907 1045.28359 NaN NaN NaN NaN NaN NaN NaN 161.72 1 161.72 161.22 162.22 0 0 0 0 0.19624 1 32483 32483 0.0033805 0 1 + 3450 12892 1942 1944 3834 3834 -0.23724397177988976 AMDFSRRLREL 11 Unmodified _AMDFSRRLREL_ 0 0 0 nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A;BCL11A|p.L360Sfs*61|3|0.26|ENSG00000119866|chr2:60461834-60461834|G/-|frameshift_variant;BCL11A|p.S554Vfs*18|1|0.05|ENSG00000119866|chr2:60461252-60461253|-/C|frameshift_variant;BCL11B|p.P420Rfs*55|1|0.23|ENSG00000127152|chr14:99175577-99175577|G/-|frameshift_variant;nc|ENSG00000127152|Q9C0K0-2|BCL11B;ENSG00000127152|ENST00000357195|BCL11B nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000127152|Q9C0K0-2|BCL11B nc|ENSG00000119866|Q9H165-2|BCL11A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2511291503906 3 465.250477 1392.7296 NaN NaN NaN NaN NaN NaN NaN 171.38 1 166.59 166.09 167.09 -4.7898 0 0 0 0.22632 1 34843 34843 0.172 0.12821 1 3451 3104;3465 1943 1945 3835 3835 0.048946962513355174 AMDFSRRLREL 11 Unmodified _AMDFSRRLREL_ 0 0 0 nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A;BCL11A|p.L360Sfs*61|3|0.26|ENSG00000119866|chr2:60461834-60461834|G/-|frameshift_variant;BCL11A|p.S554Vfs*18|1|0.05|ENSG00000119866|chr2:60461252-60461253|-/C|frameshift_variant;BCL11B|p.P420Rfs*55|1|0.23|ENSG00000127152|chr14:99175577-99175577|G/-|frameshift_variant;nc|ENSG00000127152|Q9C0K0-2|BCL11B;ENSG00000127152|ENST00000357195|BCL11B nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000127152|Q9C0K0-2|BCL11B nc|ENSG00000119866|Q9H165-2|BCL11A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2499694824219 3 465.250477 1392.7296 NaN NaN NaN NaN NaN NaN NaN 116.27 1 111.69 111.19 112.19 -4.5815 0 0 0 0.22632 1 22311 22311 0.026206 0 1 3452 3104;3465 1943 1945 3836 3836 0.048946962513355174 AMDWDSETRRL 11 Unmodified _AMDWDSETRRL_ 0 0 0 nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ARL8B-USP4|1|fusion;ENST00000485450.5_1_3:49315728-49349110:-|nuORF nc|ENSG00000114316|Q13107-2|USP4 nc|ENSG00000114316|Q13107-2|USP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24462890625 3 460.550593 1378.62995 0.10414 4.7961E-05 0.28096 0.00012939 0.38509 0.00017736 460.55068101569157 95.248 0.31721 91.057 90.928 91.245 -4.1911 13 8 2 0 0 0 0.93557 1 18172 18172 7.846 3.6565 1 938590 3453 2783 1944 1946 3837 3837 -0.04422166153267426 AMFDFSEKL 9 Unmodified _AMFDFSEKL_ 0 0 0 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.771484375 2 544.260068 1086.50558 0.38466 0.00020936 -0.48541 -0.00026419 -0.10075 -5.4832E-05 544.7613338401795 158.72 0.64421 153.92 153.62 154.26 -4.7952 27 17 2 0 0 0 0.58395 1 31599 31599 28.495 13.656 1 2195300 3454 3426 1945 1947 3838 3838 -0.034210119026511165 AMFDFSEKL 9 Unmodified _AMFDFSEKL_ 0 0 0 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7744140625 2 544.260068 1086.50558 0.19803 0.00010778 0.063403 3.4507E-05 0.26143 0.00014229 544.2599588161461 159.39 0.60545 154.12 153.83 154.43 -5.2748 31 16 3 0 0 0 0.64397 1 30954 30954 19.362 3.5148 1 2328400 3455 3426 1945 1947 3839 3839 -0.034210119026511165 AMFDFSEKL 9 Unmodified _AMFDFSEKL_ 0 0 0 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7852172851562 2 544.260068 1086.50558 0.519 0.00028247 -0.058081 -3.1611E-05 0.46092 0.00025086 544.2596262990286 159.4 0.47171 154.13 153.73 154.2 -5.2712 21 12 2 0 0 0 0.70212 1 30908 30908 27.629 4.4804 1 1843500 3456 3426 1945 1947 3840 3840 -0.034210119026511165 AMFDKKVQL 9 Unmodified _AMFDKKVQL_ 0 0 0 nc|ENSG00000182253|O15061-2|SYNM;ENSG00000182253|ENST00000336292|SYNM nc|ENSG00000182253|O15061-2|SYNM nc|ENSG00000182253|O15061-2|SYNM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015075683594 3 360.535444 1078.5845 -0.34147 -0.00012311 0.51554 0.00018587 0.17406 6.2756E-05 360.5355413460183 88.234 0.58965 88.234 87.952 88.542 0 30 16 3 0 0 0 0.39339 1 17246 17246 36.506 21.258 1 2038700 3457 6776 1946 1948 3841 3841 0.04835260122285945 AMFDKKVQL 9 Unmodified _AMFDKKVQL_ 0 0 0 nc|ENSG00000182253|O15061-2|SYNM;ENSG00000182253|ENST00000336292|SYNM nc|ENSG00000182253|O15061-2|SYNM nc|ENSG00000182253|O15061-2|SYNM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016296386719 3 360.535444 1078.5845 -0.29265 -0.00010551 0.27151 9.7888E-05 -0.021145 -7.6235E-06 360.5355117912817 91.968 1.1696 88.043 87.098 88.267 -3.9251 38 14 3 0 0 0 0.11032 2 18002 17953;18002 40.239 25.282 1 4971700 3458 6776 1946 1948 3842;3843 3843 0.04835260122285945 AMFDKKVQL 9 Unmodified _AMFDKKVQL_ 0 0 0 nc|ENSG00000182253|O15061-2|SYNM;ENSG00000182253|ENST00000336292|SYNM nc|ENSG00000182253|O15061-2|SYNM nc|ENSG00000182253|O15061-2|SYNM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017822265625 3 360.535444 1078.5845 0.28686 0.00010342 -0.037454 -1.3503E-05 0.24941 8.9921E-05 360.53531914020647 92.089 0.55634 87.995 87.668 88.224 -4.0946 35 15 3 0 0 0 0.23009 1 17546 17546 55.503 35.088 1 3510100 3459 6776 1946 1948 3844 3844 0.04835260122285945 AMFDKKVQL 9 Unmodified _AMFDKKVQL_ 0 0 0 nc|ENSG00000182253|O15061-2|SYNM;ENSG00000182253|ENST00000336292|SYNM nc|ENSG00000182253|O15061-2|SYNM nc|ENSG00000182253|O15061-2|SYNM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 3 360.535444 1078.5845 -0.57118 -0.00020593 0.6419 0.00023143 0.070715 2.5495E-05 360.5355826423473 91.779 0.62419 87.971 87.652 88.276 -3.8083 35 17 3 0 0 0 0.12183 1 17595 17595 43.772 28.815 1 4222500 3460 6776 1946 1948 3845 3845 0.04835260122285945 AMFERIVKA 9 Unmodified _AMFERIVKA_ 0 0 0 nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A nc|ENSG00000114302|P13861-2|PRKAR2A nc|ENSG00000114302|P13861-2|PRKAR2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2836303710938 2 532.799694 1063.58484 0.47137 0.00025115 -0.1693 -9.0204E-05 0.30207 0.00016094 532.799639432159 80.496 0.765 80.496 80.075 80.84 0 43 21 3 0 0 0 0.1629 2 15703 15636;15703 42.312 14.482 1 5738700 3461 2781 1947 1949 3846;3847 3847 0.05558679842170022 AMFERIVKA 9 Unmodified _AMFERIVKA_ 0 0 0 nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A nc|ENSG00000114302|P13861-2|PRKAR2A nc|ENSG00000114302|P13861-2|PRKAR2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2820434570312 2 532.799694 1063.58484 0.046259 2.4647E-05 0.035793 1.9071E-05 0.082052 4.3717E-05 532.7997747499992 84.004 0.61646 80.397 80.013 80.63 -3.6079 42 17 3 0 0 0 0.11836 1 16413 16413 49.527 11.553 1 6444300 3462 2781 1947 1949 3848 3848 0.05558679842170022 AMFERIVKA 9 Unmodified _AMFERIVKA_ 0 0 0 nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A nc|ENSG00000114302|P13861-2|PRKAR2A nc|ENSG00000114302|P13861-2|PRKAR2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2830200195312 2 532.799694 1063.58484 0.54642 0.00029113 -0.27684 -0.0001475 0.26957 0.00014363 532.7995613822334 84.166 0.69442 80.257 79.936 80.63 -3.9093 47 19 3 0 0 0 0.11836 1 16010 16010 49.527 11.553 1 8225100 3463 2781 1947 1949 3849 3849 0.05558679842170022 AMFERIVKA 9 Unmodified _AMFERIVKA_ 0 0 0 nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A nc|ENSG00000114302|P13861-2|PRKAR2A nc|ENSG00000114302|P13861-2|PRKAR2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2828979492188 2 532.799694 1063.58484 0.0087337 4.6533E-06 -0.058171 -3.0993E-05 -0.049437 -2.634E-05 532.7997178315003 84.027 0.60258 80.316 79.992 80.594 -3.7117 39 16 3 0 0 0 0.13797 1 16023 16023 65.474 19.453 1 5502500 3464 2781 1947 1949 3850 3850 0.05558679842170022 AMFEWGSQ 8 Unmodified _AMFEWGSQ_ 0 0 0 ENST00000587377.5_1_16:4847463-4849700:-|nuORF;ENST00000588201.5_1_16:4847463-4848731:-|nuORF;ENSG00000067836|ENST00000322048|ROGDI ENST00000587377.5_1_16:4847463-4849700:-|nuORF ENST00000587377.5_1_16:4847463-4849700:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7331848144531 2 478.202553 954.390553 0.37267 0.00017821 1.097 0.0005246 1.4697 0.00070281 478.2030674344463 72.429 0.55738 68.891 68.604 69.162 -3.5385 18 15 2 0 0 0 0.88646 1 13708 13708 1.7423 1.4908 1 1017800 3465 1394 1948 1950 3851 3851 -0.08846696313776192 AMGEKSFSV 9 Unmodified _AMGEKSFSV_ 0 0 0 ENST00000493417.5_1_9:132839594-132891041:+|nuORF;ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107 ENST00000493417.5_1_9:132839594-132891041:+|nuORF ENST00000493417.5_1_9:132839594-132891041:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73321533203125 2 478.23131 954.448068 -0.40805 -0.00019514 0.23346 0.00011165 -0.17459 -8.3496E-05 478.2313303185205 68.568 0.75099 68.568 68.144 68.895 0 34 20 2 0 0 0 0.30618 2 13221 13221;13307 31.268 7.2478 1 5211600 3466 4741 1949 1951 3852;3853 3852 -0.03097854108204956 AMGEKSFSV 9 Unmodified _AMGEKSFSV_ 0 0 0 ENST00000493417.5_1_9:132839594-132891041:+|nuORF;ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107 ENST00000493417.5_1_9:132839594-132891041:+|nuORF ENST00000493417.5_1_9:132839594-132891041:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7327880859375 2 478.23131 954.448068 -0.13304 -6.3625E-05 0.036933 1.7662E-05 -0.096109 -4.5962E-05 478.23130297032054 71.798 0.74236 68.487 68.141 68.884 -3.3107 36 20 2 0 0 0 0.088942 2 13981 13981;14040 59.368 24.967 1 5622500 3467 4741 1949 1951 3854;3855 3854 -0.03097854108204956 AMGEKSFSV 9 Unmodified _AMGEKSFSV_ 0 0 0 ENST00000493417.5_1_9:132839594-132891041:+|nuORF;ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107 ENST00000493417.5_1_9:132839594-132891041:+|nuORF ENST00000493417.5_1_9:132839594-132891041:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7327880859375 2 478.23131 954.448068 0.28509 0.00013634 -0.34141 -0.00016327 -0.056327 -2.6937E-05 478.23107341950174 72.13 0.67682 68.503 68.161 68.838 -3.6275 37 18 3 0 0 0 0.088942 3 13608 13562;13608;13659 59.368 24.967 1 4572200 3468 4741 1949 1951 3856;3857;3858 3857 -0.03097854108204956 AMGEKSFSV 9 Unmodified _AMGEKSFSV_ 0 0 0 ENST00000493417.5_1_9:132839594-132891041:+|nuORF;ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107;nc|ENSG00000148358|Q5VW38-3|GPR107 ENST00000493417.5_1_9:132839594-132891041:+|nuORF ENST00000493417.5_1_9:132839594-132891041:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7327880859375 2 478.23131 954.448068 0.36663 0.00017533 -0.35844 -0.00017142 0.0081903 3.9169E-06 478.2310753435527 72.034 0.69543 68.496 68.152 68.847 -3.5385 41 19 3 0 0 0 0.080883 2 13663 13614;13663 61.602 27.2 1 4403200 3469 4741 1949 1951 3859;3860 3860 -0.03097854108204956 AMGTVPGQAPR 11 Unmodified _AMGTVPGQAPR_ 0 0 0 ENSG00000183060|ENST00000684762|LYSMD4;nc|ENSG00000183060|Q5XG99-2|LYSMD4 ENSG00000183060|ENST00000684762|LYSMD4 ENSG00000183060|ENST00000684762|LYSMD4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 362.18341064453125 3 362.190447 1083.54951 -1.6288 -0.00058992 1.6892 0.0006118 0.060415 2.1882E-05 362.19089427806557 19.92 0.58935 18.284 17.946 18.535 -1.6351 24 16 3 0 0 0 0.60781 1 2978 2978 5.4027 0 1 1082300 3470 6825 1950 1952 3861 3861 0.011080173143454886 AMHGHVEVV 9 Unmodified _AMHGHVEVV_ 0 0 0 ENSG00000198142|ENST00000356454|SOWAHC ENSG00000198142|ENST00000356454|SOWAHC ENSG00000198142|ENST00000356454|SOWAHC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2633361816406 2 489.744919 977.475285 0.12191 5.9705E-05 -0.37472 -0.00018352 -0.25281 -0.00012381 489.7450008117452 34.295 0.34871 32.079 31.951 32.299 -2.2158 20 9 3 0 0 0 0.66537 1 5985 5985 8.5933 0 1 992160 3471 7433 1951 1953 3862 3862 -0.014353257771631434 AMHGHVEVV 9 Unmodified _AMHGHVEVV_ 0 0 0 ENSG00000198142|ENST00000356454|SOWAHC ENSG00000198142|ENST00000356454|SOWAHC ENSG00000198142|ENST00000356454|SOWAHC MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.744919 977.475285 0.20212 9.8986E-05 -1.6935 -0.00082936 -1.4913 -0.00073037 489.7448067180163 32.206 0.45423 32.206 32.013 32.467 0 0.059827 -0.00085308 NaN 8.5933 32 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1713600 3472 7433 1951 1953 -0.014353257771631434 AMHGHVEVV 9 Unmodified _AMHGHVEVV_ 0 0 0 ENSG00000198142|ENST00000356454|SOWAHC ENSG00000198142|ENST00000356454|SOWAHC ENSG00000198142|ENST00000356454|SOWAHC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.744919 977.475285 0.30279 0.00014829 -0.79546 -0.00038957 -0.49268 -0.00024129 489.7448239771109 34.307 0.55463 32.161 31.875 32.429 -2.1468 0.014518 2.6493E-05 NaN 8.5933 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2239900 3473 7433 1951 1953 -0.014353257771631434 AMHRLDRYHWV 11 Unmodified _AMHRLDRYHWV_ 0 0 0 ENSG00000137707|ENST00000692032|BTG4 ENSG00000137707|ENST00000692032|BTG4 ENSG00000137707|ENST00000692032|BTG4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3941040039062 2 742.372412 1482.73027 NaN NaN NaN NaN NaN NaN NaN 61.614 1 61.614 61.114 62.114 0 0 0 0 0.22632 1 11818 11818 0.00056442 0 1 3474 4099 1952 1954 3863 3863 0.008215356910341143 AMHRLDRYHWV 11 Unmodified _AMHRLDRYHWV_ 0 0 0 ENSG00000137707|ENST00000692032|BTG4 ENSG00000137707|ENST00000692032|BTG4 ENSG00000137707|ENST00000692032|BTG4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.369384765625 2 742.372412 1482.73027 NaN NaN NaN NaN NaN NaN NaN 64.46 1 61.462 60.962 61.962 -2.9975 0 0 0 0.23698 1 12467 12467 2.7352 0 1 3475 4099 1952 1954 3864 3864 0.008215356910341143 AMHRLDRYHWV 11 Unmodified _AMHRLDRYHWV_ 0 0 0 ENSG00000137707|ENST00000692032|BTG4 ENSG00000137707|ENST00000692032|BTG4 ENSG00000137707|ENST00000692032|BTG4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3934936523438 2 742.372412 1482.73027 NaN NaN NaN NaN NaN NaN NaN 64.723 1 61.725 61.225 62.225 -2.9981 0 0 0 0.22632 1 12521 12521 0.0059557 0 1 3476 4099 1952 1954 3865 3865 0.008215356910341143 AMISAHYGL 9 Unmodified _AMISAHYGL_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77069091796875 2 481.741845 961.469137 -0.071782 -3.458E-05 -0.19987 -9.6286E-05 -0.27165 -0.00013087 481.7419925275206 103.47 0.81255 99.251 98.909 99.721 -4.2183 37 23 2 0 0 0 0.091177 1 20359 20359 60.39 28.084 1 2362300 3477 2443 1953 1955 3866 3866 -0.013138440086891023 AMISAHYGL 9 Unmodified _AMISAHYGL_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 481.741845 961.469137 0.2567 0.00012366 -0.0089514 -4.3123E-06 0.24774 0.00011935 481.741835171847 103.68 0.55126 99.337 98.966 99.517 -4.346 0.048085 0.00019206 NaN 60.39 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1758800 3478 2443 1953 1955 -0.013138440086891023 AMISAHYGL 9 Unmodified _AMISAHYGL_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 481.741845 961.469137 0.53453 0.00025751 -0.95078 -0.00045803 -0.41625 -0.00020053 481.7415499110034 103.3 0.5624 99.279 98.995 99.557 -4.0212 -0.010099 -0.00071537 NaN 60.39 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1264600 3479 2443 1953 1955 -0.013138440086891023 AMKEDNEKV 9 Unmodified _AMKEDNEKV_ 0 0 0 ENST00000526507.5_1_11:125315993-125321385:-|nuORF;ENST00000530096.1_1_11:125315993-125322341:-|nuORF;ENST00000524427.5_1_11:125315993-125326162:-|nuORF;ENSG00000149557|ENST00000278919|FEZ1 ENST00000526507.5_1_11:125315993-125321385:-|nuORF ENST00000526507.5_1_11:125315993-125321385:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2625122070312 2 532.258056 1062.50156 0.40317 0.00021459 -0.59066 -0.00031438 -0.1875 -9.9797E-05 532.2577404571941 39.041 1.2621 36.599 36.054 37.316 -2.4419 81 35 3 0 0 0 0.61228 1 6906 6906 12.241 2.1667 1 5941900 3480 4800 1954 1956 3867 3867 -0.027191013963602018 AMKEDNEKV 9 Unmodified _AMKEDNEKV_ 0 0 0 ENST00000526507.5_1_11:125315993-125321385:-|nuORF;ENST00000530096.1_1_11:125315993-125322341:-|nuORF;ENST00000524427.5_1_11:125315993-125326162:-|nuORF;ENSG00000149557|ENST00000278919|FEZ1 ENST00000526507.5_1_11:125315993-125321385:-|nuORF ENST00000526507.5_1_11:125315993-125321385:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2611694335938 2 532.258056 1062.50156 0.20885 0.00011116 -0.58092 -0.0003092 -0.37207 -0.00019804 532.257794703883 38.938 1.3695 36.533 35.913 37.282 -2.4049 87 38 3 0 0 0 0.6329 1 7052 7052 10.824 0.67336 1 4468200 3481 4800 1954 1956 3868 3868 -0.027191013963602018 AMKEDNEKV 9 Unmodified _AMKEDNEKV_ 0 0 0 ENST00000526507.5_1_11:125315993-125321385:-|nuORF;ENST00000530096.1_1_11:125315993-125322341:-|nuORF;ENST00000524427.5_1_11:125315993-125326162:-|nuORF;ENSG00000149557|ENST00000278919|FEZ1 ENST00000526507.5_1_11:125315993-125321385:-|nuORF ENST00000526507.5_1_11:125315993-125321385:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.258056 1062.50156 -0.24002 -0.00012775 -0.075625 -4.0252E-05 -0.31565 -0.00016801 532.2580170051491 39.112 1.4035 36.563 35.944 37.348 -2.5491 -0.0015715 0.00040925 NaN 12.241 77 39 2 NaN NaN NaN NaN 0 NaN NaN 0 6982800 3482 4800 1954 1956 -0.027191013963602018 AMKKIEDDN 9 Unmodified _AMKKIEDDN_ 0 0 0 ENST00000498163.1_1_8:23064590-23064794:+|nuORF ENST00000498163.1_1_8:23064590-23064794:+|nuORF ENST00000498163.1_1_8:23064590-23064794:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2611694335938 2 532.258056 1062.50156 0.40317 0.00021459 -0.59066 -0.00031438 -0.1875 -9.9797E-05 532.2577404571941 39.041 1.2621 36.599 36.054 37.316 -2.4419 81 35 3 0 0 0 0.69259 1 6960 6960 6.7232 0 1 5941900 3483 10599 1955 1957 3869 3869 -0.027191013963602018 AMKQLRQR 8 Unmodified _AMKQLRQR_ 0 0 0 nc|ENSG00000221977|Q8NGC2|OR4E2;ENSG00000221977|ENST00000641524|OR4E2 nc|ENSG00000221977|Q8NGC2|OR4E2 nc|ENSG00000221977|Q8NGC2|OR4E2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.2038879394531 3 344.202799 1029.58657 NaN NaN NaN NaN NaN NaN NaN 28.189 1 26.433 25.933 26.933 -1.7552 0 0 0 0.2293 1 4750 4750 6.1918 2.6048 1 3484 7768 1956 1958 3870 3870 0.07295733650767033 AMLEEVNYI 9 Unmodified _AMLEEVNYI_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2;nc|ENSG00000175305|O96020-2|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2653198242188 2 541.26535 1080.51615 0.3157 0.00017088 0.17216 9.3184E-05 0.48786 0.00026406 541.2654511817445 149.93 0.73601 145.19 144.73 145.46 -4.7323 27 20 2 0 0 0 0.058954 3 29796 29755;29787;29796 60.47 29.767 1 4819200 3485 6399 1957 1959 3871;3872;3873 3873 -0.02089029248213592 AMLEEVNYI 9 Unmodified _AMLEEVNYI_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2;nc|ENSG00000175305|O96020-2|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2650756835938 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 150.32 1 145.12 144.62 145.62 -5.1994 0 0 0 0.10202 1 29126 29126 37.974 8.8924 1 3486 6399 1957 1959 3874 3874 -0.02089029248213592 AMLEEVNYI 9 Unmodified _AMLEEVNYI_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2;nc|ENSG00000175305|O96020-2|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.267333984375 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 150.36 1 145.24 144.74 145.74 -5.1204 0 0 0 0.10202 1 29140 29140 37.974 16.227 1 3487 6399 1957 1959 3875 3875 -0.02089029248213592 AMLGHKPVGV 10 Unmodified _AMLGHKPVGV_ 0 0 0 ENSG00000101189|ENST00000370487|MRGBP ENSG00000101189|ENST00000370487|MRGBP ENSG00000101189|ENST00000370487|MRGBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.1500244140625 3 336.86015 1007.55862 -0.39043 -0.00013152 0.22513 7.5837E-05 -0.1653 -5.5684E-05 336.86015049058284 49.554 0.52498 46.673 46.38 46.905 -2.8811 23 14 2 0 0 0 0.42762 1 9421 9421 10.151 3.5202 1 1034300 3488 2046 1958 1960 3876 3876 0.05514410670696179 AMLGHKPVGV 10 Unmodified _AMLGHKPVGV_ 0 0 0 ENSG00000101189|ENST00000370487|MRGBP ENSG00000101189|ENST00000370487|MRGBP ENSG00000101189|ENST00000370487|MRGBP MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 336.86015 1007.55862 -0.039701 -1.3374E-05 0.072608 2.4459E-05 0.032907 1.1085E-05 336.8599026200239 47.047 0.10629 47.047 46.98 47.087 0 0.23081 5.9786E-05 NaN 10.151 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 460460 3489 2046 1958 1960 0.05514410670696179 AMLGHKPVGV 10 Unmodified _AMLGHKPVGV_ 0 0 0 ENSG00000101189|ENST00000370487|MRGBP ENSG00000101189|ENST00000370487|MRGBP ENSG00000101189|ENST00000370487|MRGBP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 336.86015 1007.55862 0.034214 1.1525E-05 -0.33242 -0.00011198 -0.2982 -0.00010045 336.8600220449753 49.728 0.68982 46.729 46.413 47.103 -2.999 -0.087743 -0.00034953 NaN 10.151 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1073000 3490 2046 1958 1960 0.05514410670696179 AMLNEPWAV 9 Oxidation (M) _AM(Oxidation (M))LNEPWAV_ AM(1)LNEPWAV AM(50)LNEPWAV 0 0 1 ENSG00000092098|ENST00000324103|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31;RNF31|p.K458Sfs*34|2|0.31|ENSG00000092098|chr14:24150766-24150766|C/-|frameshift_variant ENSG00000092098|ENST00000324103|RNF31 ENSG00000092098|ENST00000324103|RNF31 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7000732421875 2 523.75241 1045.49027 NaN NaN NaN NaN NaN NaN NaN 131.1 1 131.1 130.6 131.6 0 0 0 0 0.054963 1 25918 25918 49.933 20.851 1 3491 1826 1959 1961 3877 3877 15 -0.030658786998628784 AMLPSITNV 9 Oxidation (M) _AM(Oxidation (M))LPSITNV_ AM(1)LPSITNV AM(52)LPSITNV 0 0 1 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.254638671875 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 121.88 1 121.88 121.38 122.38 0 0 0 0 0.04992 1 24027 24027 52.268 24.64 1 3492 7260 1960 1962 3878 3878 99 0.013190054429287557 AMLPSITNV 9 Oxidation (M) _AM(Oxidation (M))LPSITNV_ AM(1)LPSITNV AM(44)LPSITNV 0 0 1 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25494384765625 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 122.09 1 122.09 121.59 122.59 0 0 0 0 0.070386 1 24069 24069 43.858 9.7559 1 3493 7260 1960 1962 3879 3879 99 0.013190054429287557 AMLPSITNV 9 Oxidation (M) _AM(Oxidation (M))LPSITNV_ AM(1)LPSITNV AM(48)LPSITNV 0 0 1 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2547912597656 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 122.58 1 122.58 122.08 123.08 0 0 0 0 0.05839 1 24160 24160 48.346 21.462 1 3494 7260 1960 1962 3880 3880 99 0.013190054429287557 AMLPSITNV 9 Oxidation (M) _AM(Oxidation (M))LPSITNV_ AM(1)LPSITNV AM(71)LPSITNV 0 0 1 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2547607421875 2 481.254785 960.495018 0.13189 6.3471E-05 -0.032525 -1.5653E-05 0.099361 4.7818E-05 481.2547173182444 126.54 1.8272 121.93 121.52 123.35 -4.6172 80 51 2 0 0 0 0.049627 5 24974 24974;24993;25023;25071;25116 71.134 25.113 1 3044600 3495 7260 1960 1962 3881;3882;3883;3884;3885 3881 99 0.013190054429287557 AMLPSITNV 9 Oxidation (M) _AM(Oxidation (M))LPSITNV_ AM(1)LPSITNV AM(57)LPSITNV 0 0 1 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2546081542969 2 481.254785 960.495018 0.25713 0.00012375 -0.31398 -0.0001511 -0.056849 -2.7359E-05 481.25463746922156 126.94 1.2784 122.14 121.67 122.95 -4.7958 52 35 2 0 0 0 0.095051 3 24366 24366;24423;24484 57.471 15.92 1 1645100 3496 7260 1960 1962 3886;3887;3888 3886 99 0.013190054429287557 AMLPSITNV 9 Oxidation (M) _AM(Oxidation (M))LPSITNV_ AM(1)LPSITNV AM(71)LPSITNV 0 0 1 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2548522949219 2 481.254785 960.495018 0.10674 5.137E-05 -0.059165 -2.8473E-05 0.047577 2.2897E-05 481.25472667764524 126.96 1.4941 122.26 121.54 123.03 -4.6998 73 41 2 0 0 0 0.049627 6 24494 24348;24372;24393;24443;24494;24538 71.134 31.176 1 1852600 3497 7260 1960 1962 3889;3890;3891;3892;3893;3894 3893 99 0.013190054429287557 AMLPTLGKV 9 Unmodified _AMLPTLGKV_ 0 0 0 MIB1-MYO5B|1|fusion;ENSG00000101752|ENST00000261537|MIB1;MIB1|p.R371Q|1|0.23|ENSG00000101752|chr18:21798103-21798103|G/A|missense_variant MIB1-MYO5B|1|fusion MIB1-MYO5B|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2458190917969 2 465.278063 928.541574 NaN NaN NaN NaN NaN NaN NaN 128.64 1 123.82 123.32 124.32 -4.817 0 0 0 0.19006 1 24692 24692 24.991 5.734 1 3498 12146 1961 1963 3895 3895 0.07444490064892761 AMLYRLCS 8 Unmodified _AMLYRLCS_ 0 0 0 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7368469238281 2 478.738248 955.461943 NaN NaN NaN NaN NaN NaN NaN 84.532 1 80.623 80.123 81.123 -3.9093 0 0 0 0.23107 1 16068 16068 1.7423 1.0609 1 + 3499 18324 1962 1964 3896 3896 -0.01756899880774654 AMMYQEATHY 10 Unmodified _AMMYQEATHY_ 0 0 0 REV__tr|U7SVS6|U7SVS6_FUSNUNADARdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01324PE=4SV=1 REV__tr|U7SVS6|U7SVS6_FUSNUNADARdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01324PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7614135742188 2 622.757366 1243.50018 NaN NaN NaN NaN NaN NaN NaN 140.56 1 140.56 140.06 141.06 0 0 0 0 2.8426 1 27990 27990 0.26539 0 1 + 3500 25195 1963 1965 3897 3897 -0.11183058756751052 AMNARPHKV 9 Unmodified _AMNARPHKV_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;chr12:54281945-54282090|465|21.34|0.0|21.03|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000484852.1_1_3:147884522-147885023:-|nuORF;chr12:54281908-54283827|478|50.47|0.0|22.27|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281896-54283827|481|161.31|0.0|23.94|+|ENST00000679273|HNRNPA1,HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;chr12:54281941-54282052|473|46.5|0.0|22.15|+|ENST00000676842|HNRNPA1,HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.5314025878906 3 341.855399 1022.54437 -0.62438 -0.00021345 0.12236 4.183E-05 -0.50202 -0.00017162 341.8555545636883 14.617 0.69825 13.444 13.279 13.978 -1.173 44 19 4 0 0 0 0.076959 1 1988 1988 60.47 57.839 1 30750000 3501 3929;9885 1964 1966 3898 3898 0.0339975824240355 AMNARPHKV 9 Unmodified _AMNARPHKV_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;chr12:54281945-54282090|465|21.34|0.0|21.03|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000484852.1_1_3:147884522-147885023:-|nuORF;chr12:54281908-54283827|478|50.47|0.0|22.27|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281896-54283827|481|161.31|0.0|23.94|+|ENST00000679273|HNRNPA1,HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;chr12:54281941-54282052|473|46.5|0.0|22.15|+|ENST00000676842|HNRNPA1,HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 341.855399 1022.54437 -0.48723 -0.00016656 0.1693 5.7875E-05 -0.31793 -0.00010869 341.85552410151223 13.738 0.66337 13.738 13.581 14.244 0 0.19318 -5.3655E-05 NaN 60.47 41 18 5 NaN NaN NaN NaN 0 NaN NaN 0 43754000 3502 3929;9885 1964 1966 0.0339975824240355 AMNARPHKV 9 Unmodified _AMNARPHKV_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;chr12:54281945-54282090|465|21.34|0.0|21.03|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000484852.1_1_3:147884522-147885023:-|nuORF;chr12:54281908-54283827|478|50.47|0.0|22.27|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281896-54283827|481|161.31|0.0|23.94|+|ENST00000679273|HNRNPA1,HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;chr12:54281941-54282052|473|46.5|0.0|22.15|+|ENST00000676842|HNRNPA1,HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 341.855399 1022.54437 -0.93182 -0.00031855 0.41925 0.00014332 -0.51257 -0.00017522 341.85567374230976 14.566 0.59002 13.452 13.297 13.887 -1.1142 -0.092657 0.00020269 NaN 60.47 46 16 5 NaN NaN NaN NaN 0 NaN NaN 0 50631000 3503 3929;9885 1964 1966 0.0339975824240355 AMNGKSFSV 9 Oxidation (M) _AM(Oxidation (M))NGKSFSV_ AM(1)NGKSFSV AM(74)NGKSFSV 0 0 1 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;nc|ENSG00000133657|Q9H7F0-2|ATP13A3;ENST00000484023.1_1_3:194151670-194152613:-|nuORF ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7446594238281 2 478.728935 955.443317 0.096643 4.6266E-05 0.53289 0.00025511 0.62953 0.00030137 478.72914860672427 40.472 0.46722 40.472 40.136 40.604 0 23 12 3 0 0 0 0.043105 1 7504 7504 74.2 41.414 1 1439400 3504 263 1965 1967 3899 3899 0 -0.036187382509638155 AMNGKSFSV 9 Oxidation (M) _AM(Oxidation (M))NGKSFSV_ AM(1)NGKSFSV AM(40)NGKSFSV 0 0 1 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;nc|ENSG00000133657|Q9H7F0-2|ATP13A3;ENST00000484023.1_1_3:194151670-194152613:-|nuORF ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7283020019531 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 42.722 1 40.071 39.571 40.571 -2.651 0 0 0 0.089844 1 7698 7698 40.239 17.091 1 3505 263 1965 1967 3900 3900 0 -0.036187382509638155 AMNKEGGTASV 11 Unmodified _AMNKEGGTASV_ 0 0 0 ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1 ENSG00000141858|ENST00000533683|SAMD1 ENSG00000141858|ENST00000533683|SAMD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2841186523438 2 532.755681 1063.49681 0.45711 0.00024353 0.13935 7.4241E-05 0.59647 0.00031777 532.7556844261071 21.007 0.31525 19.533 19.35 19.665 -1.4742 16 8 2 0 0 0 0.47678 1 3549 3549 35.612 19.463 1 1158700 3506 4397 1966 1968 3901 3901 -0.032399855391076926 AMNRTPSP 8 Unmodified _AMNRTPSP_ 0 0 0 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22894287109375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 88.591 1 84.798 84.298 85.298 -3.7926 0 0 0 0.21486 1 17332 17332 8.5933 2.8329 1 + 3507 24061 1967 1969 3902 3902 -0.023875877025943737 AMNRTPSP 8 Unmodified _AMNRTPSP_ 0 0 0 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22857666015625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 98.159 1 94.203 93.703 94.703 -3.9564 0 0 0 0.23487 1 18840 18840 0.62683 0.21856 1 + 3508 24061 1967 1969 3903 3903 -0.023875877025943737 AMRALYSALR 10 Unmodified _AMRALYSALR_ 0 0 0 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.32177734375 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 142.91 1 142.91 142.41 143.41 0 0 0 0 2.8426 1 28507 28507 0.26539 0.19213 1 + 3509 18323 1968 1970 3904 3904 0.05880869619409168 AMVKVLRYYWL 11 Unmodified _AMVKVLRYYWL_ 0 0 0 REV__ENST00000419016.6_1_9:33281251-33281398:+|nuORF REV__ENST00000419016.6_1_9:33281251-33281398:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7710876464844 3 481.272331 1440.79516 0.13182 6.344E-05 -1.0588 -0.00050957 -0.92698 -0.00044613 481.271774099204 132.67 0.55347 127.87 127.52 128.08 -4.799 20 15 2 0 0 0 0.6587 1 25526 25526 0.172 0.14059 1 1446600 + 3510 21493 1969 1971 3905 3905 0.09239717444347662 AMVPGHHIV 9 Unmodified _AMVPGHHIV_ 0 0 0 ENSG00000183011|ENST00000575771|NAA38;nc|ENSG00000183011|Q9BRA0-2|NAA38 ENSG00000183011|ENST00000575771|NAA38 ENSG00000183011|ENST00000575771|NAA38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2445373535156 2 480.75783 959.501106 0.031189 1.4995E-05 0.97526 0.00046887 1.0065 0.00048386 480.7577149006657 47.896 0.5303 44.954 44.686 45.216 -2.9421 20 14 2 0 0 0 0.21602 2 8757 8757;8769 36.466 11.792 1 802310 3511 6824 1970 1972 3906;3907 3906 0.019735684651095653 AMYPDQVQL 9 Oxidation (M) _AM(Oxidation (M))YPDQVQL_ AM(1)YPDQVQL AM(66)YPDQVQL 0 0 1 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2678833007812 2 540.755149 1079.49575 0.61355 0.00033178 -0.5402 -0.00029212 0.073342 3.966E-05 540.7548464176383 100.11 1.0738 100.11 99.582 100.66 0 68 30 3 0 0 0 0.063365 1 19638 19638 66.457 33.671 1 4686700 3512 3901 1971 1973 3908 3908 65 -0.040821999080208116 AMYPDQVQL 9 Oxidation (M) _AM(Oxidation (M))YPDQVQL_ AM(1)YPDQVQL AM(66)YPDQVQL 0 0 1 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.281005859375 2 540.755149 1079.49575 -0.0047599 -2.5739E-06 0.15875 8.5843E-05 0.15399 8.3269E-05 540.7552375593233 104.58 0.99949 100.36 99.825 100.82 -4.2183 54 28 2 0 0 0 0.12663 1 20589 20589 66.457 26.507 1 5025400 3513 3901 1971 1973 3909 3909 65 -0.040821999080208116 AMYPDQVQL 9 Oxidation (M) _AM(Oxidation (M))YPDQVQL_ AM(1)YPDQVQL AM(76)YPDQVQL 0 0 1 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2827758789062 2 540.755149 1079.49575 0.80742 0.00043662 -0.74847 -0.00040474 0.058954 3.188E-05 540.7547452554145 104.31 1.2412 100.26 99.769 101.01 -4.0543 74 34 3 0 0 0 0.039785 1 20144 20144 75.761 35.811 1 5254500 3514 3901 1971 1973 3910 3910 65 -0.040821999080208116 AMYPDQVQL 9 Unmodified _AMYPDQVQL_ 0 0 0 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.268310546875 2 532.757692 1063.50083 0.088695 4.7253E-05 -0.10982 -5.8505E-05 -0.021121 -1.1252E-05 532.7577257092232 121.66 0.66533 121.66 121.33 121.99 0 29 18 3 0 0 0 0.075749 1 23980 23980 78.728 78.728 1 4519700 3515 3901 1971 1974 3911 3911 -0.028378960453892432 AMYPDQVQL 9 Unmodified _AMYPDQVQL_ 0 0 0 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2704467773438 2 532.757692 1063.50083 0.16933 9.0213E-05 -0.30712 -0.00016362 -0.13779 -7.341E-05 532.7575621769383 126.55 0.77864 121.94 121.55 122.33 -4.6172 54 21 3 0 0 0 0.35202 1 24957 24957 45.7 45.7 1 12789000 3516 3901 1971 1974 3912 3912 -0.028378960453892432 AMYPDQVQL 9 Unmodified _AMYPDQVQL_ 0 0 0 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 532.757692 1063.50083 0.6374 0.00033958 -0.66818 -0.00035598 -0.030781 -1.6399E-05 532.7573063322874 126.74 0.84563 121.95 121.57 122.41 -4.7958 57 23 3 0 0 0 0.39339 1 24362 24362 36.506 36.506 1 10735000 3517 3901 1971 1974 3913 3913 -0.028378960453892432 AMYPDQVQL 9 Unmodified _AMYPDQVQL_ 0 0 0 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.757692 1063.50083 0.23399 0.00012466 -0.16191 -8.6259E-05 0.072077 3.84E-05 532.7576340809021 126.63 0.78691 121.93 121.5 122.29 -4.6998 0.062877 0.00013755 NaN 78.728 51 21 3 NaN NaN NaN NaN 0 NaN NaN 0 7179600 3518 3901 1971 1974 -0.028378960453892432 ANAQHLARY 9 Unmodified _ANAQHLARY_ 0 0 0 ATP10A|p.R457H|1|0.3|ENSG00000206190|chr15:25718393-25718393|C/T|missense_variant ATP10A|p.R457H|1|0.3|ENSG00000206190|chr15:25718393-25718393|C/T|missense_variant ATP10A|p.R457H|1|0.3|ENSG00000206190|chr15:25718393-25718393|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2721557617188 2 522.27269 1042.53083 -0.2337 -0.00012205 0.47322 0.00024715 0.23952 0.0001251 522.2728782980041 45.82 0.72786 42.979 42.619 43.347 -2.8409 34 20 2 0 0 0 0.55728 1 8711 8711 0.40827 0.37898 1 1425400 3519 262 1972 1975 3914 3914 0.01126223734809173 ANCRIFHT 8 Unmodified _ANCRIFHT_ 0 0 0 ENST00000255198.2_2_5:76372666-76372996:-|nuORF ENST00000255198.2_2_5:76372666-76372996:-|nuORF ENST00000255198.2_2_5:76372666-76372996:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7818908691406 2 481.237261 960.45997 -0.043043 -2.0714E-05 -0.73771 -0.00035501 -0.78075 -0.00037573 481.23685229500575 89.575 0.56517 85.716 85.373 85.938 -3.8595 26 15 2 0 0 0 8448 1 17553 17553 6.2058 1.3088 1 1213500 3520 8251 1973 1976 3915 3915 -0.021841925743729007 ANDEDCMCSCC 11 Unmodified _ANDEDCMCSCC_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 597.1571655273438 2 597.155444 1192.29634 NaN NaN NaN NaN NaN NaN NaN 37.047 1 34.709 34.209 35.209 -2.3375 0 0 0 0.23698 1 6546 6546 0 0 1 + 3521 18292 1974 1977 3916 3916 -0.292120305763774 ANDNVAGIVS 10 Unmodified _ANDNVAGIVS_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24371337890625 2 480.243264 958.471974 -0.0024002 -1.1527E-06 -0.14226 -6.8322E-05 -0.14467 -6.9474E-05 480.24315772705086 30.811 0.72745 30.811 30.381 31.108 0 52 20 4 0 0 0 0.4708 1 5515 5515 26.268 3.1197 1 9938100 3522 5525 1975 1978 3917 3917 -0.008922973501739762 ANDNVAGIVS 10 Unmodified _ANDNVAGIVS_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23602294921875 2 480.243264 958.471974 0.2628 0.00012621 -0.48211 -0.00023153 -0.21931 -0.00010532 480.24300525993715 32.835 1.1517 30.688 29.82 30.972 -2.1468 66 32 3 0 0 0 0.53552 1 5731 5731 22.736 2.3217 1 9064100 3523 5525 1975 1978 3918 3918 -0.008922973501739762 ANENEWYYR 9 Unmodified _ANENEWYYR_ 0 0 0 REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7685546875 2 622.770177 1243.5258 NaN NaN NaN NaN NaN NaN NaN 14.365 1 13.155 12.655 13.655 -1.2106 0 0 0 0.19626 1 1898 1898 0.0033805 0 1 + 3524 13708 1976 1979 3919 3919 -0.0862212491849732 ANEQVEQRL 9 Unmodified _ANEQVEQRL_ 0 0 0 REV__ENSG00000072840|ENST00000264956|EVC REV__ENSG00000072840|ENST00000264956|EVC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7827758789062 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 123 1 118.27 117.77 118.77 -4.731 0 0 0 0.18272 1 23629 23629 4.7159 0 1 + 3525 14295 1977 1980 3920 3920 0.0071846546118194965 ANGFHSGAI 9 Unmodified _ANGFHSGAI_ 0 0 0 ENST00000384281.1_11:2985039-2985099:-|nuORF ENST00000384281.1_11:2985039-2985099:-|nuORF ENST00000384281.1_11:2985039-2985099:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2158203125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 70.322 1 67.073 66.573 67.573 -3.2492 0 0 0 0.23508 1 13684 13684 7.9102 1.5561 1 3526 9347 1978 1981 3921 3921 -0.027245144849530334 ANGHSGGGSE 10 Unmodified _ANGHSGGGSE_ 0 0 0 REV__ENST00000535682.1_17:73314626-73315194:-|nuORF REV__ENST00000535682.1_17:73314626-73315194:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2204284667969 2 436.678288 871.342023 -0.044212 -1.9306E-05 0.51851 0.00022642 0.4743 0.00020712 436.67845960847006 46.687 0.69295 43.803 43.5 44.193 -2.8838 47 19 3 0 0 0 0.49448 1 8501 8501 0.26539 0 1 8449800 + 3527 22810 1979 1982 3922 3922 -0.09879473629314361 ANGSFLQLVD 10 Unmodified _ANGSFLQLVD_ 0 0 0 REV__ENST00000486492.5_1_7:149248897-149255702:-|nuORF REV__ENST00000486492.5_1_7:149248897-149255702:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2655029296875 2 532.274564 1062.53457 -0.071792 -3.8213E-05 2.0658 0.0010996 1.994 0.0010613 532.2746057433005 57.015 0.62664 54.121 53.786 54.413 -2.8944 55 17 4 0 0 0 0.51622 1 10881 10881 23.79 2.0431 1 5133300 + 3528 22052 1980 1983 3923 3923 0.00580848718004745 ANGWIAMFIA 10 Unmodified _ANGWIAMFIA_ 0 0 0 REV__ENST00000529242.1_1_11:26563580-26584615:+|nuORF REV__ENST00000529242.1_1_11:26563580-26584615:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7776489257812 2 547.278595 1092.54264 0.058167 3.1833E-05 0.21878 0.00011974 0.27695 0.00015157 547.2786360631968 131.22 0.79308 126.39 126.06 126.86 -4.8355 49 22 3 0 0 0 0.47611 1 25285 25285 6.6304 6.6304 1 7111900 + 3529 22741 1981 1984 3924 3924 6.704433781123953E-05 ANIYAEFE 8 Unmodified _ANIYAEFE_ 0 0 0 REV__nc|ENSG00000167165|P19224-2|UGT1A6 REV__nc|ENSG00000167165|P19224-2|UGT1A6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7329406738281 2 478.721633 955.428712 -0.19293 -9.2361E-05 2.3103 0.001106 2.1173 0.0010136 478.72229065546213 109.6 0.70671 105.15 104.78 105.49 -4.4518 26 19 2 0 0 0 8448 1 21046 21046 14.838 2.5976 1 901920 + 3530 17906 1982 1985 3925 3925 -0.050784871274800025 ANKEHILH 8 Unmodified _ANKEHILH_ 0 0 0 ENST00000579096.1_1_17:73110716-73125130:+|nuORF;ENSG00000125449|ENST00000245543|ARMC7 ENST00000579096.1_1_17:73110716-73125130:+|nuORF ENST00000579096.1_1_17:73110716-73125130:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.773193359375 2 481.264333 960.514114 0.085706 4.1247E-05 0.45656 0.00021972 0.54226 0.00026097 481.2645187441122 53.995 1.1555 50.86 50.38 51.535 -3.1352 68 32 3 0 0 0 8448 1 9864 9864 6.2058 6.0829 1 9031200 3531 3358 1983 1986 3926 3926 0.03227722848839676 ANKHHIEA 8 Unmodified _ANKHHIEA_ 0 0 0 HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant;ENSG00000103657|ENST00000443617|HERC1;HERC1|p.V1879Lfs*26|1|0.37|ENSG00000103657|chr15:63694004-63694004|T/-|frameshift_variant;HERC1|p.M2237*|1|0.39|ENSG00000103657|chr15:63678206-63678206|T/-|frameshift_variant;HERC1|p.C2300Hfs*14|1|0.44|ENSG00000103657|chr15:63678017-63678018|AA/-|frameshift_variant HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.239501953125 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 56.33 1 53.141 52.641 53.641 -3.1895 0 0 0 0.15004 1 10439 10439 3.5871 0 1 3532 2202 1984 1987 3927 3927 0.004668632977086418 ANLLDDPNDG 10 Unmodified _ANLLDDPNDG_ 0 0 0 REV__nc|ENSG00000171723|Q9NQX3|GPHN REV__nc|ENSG00000171723|Q9NQX3|GPHN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2738647460938 2 522.235635 1042.45672 -0.3911 -0.00020424 0.59211 0.00030922 0.20101 0.00010498 522.2359190965226 41.697 0.44805 39.062 38.881 39.329 -2.6348 18 12 2 0 0 0 0.68961 2 7835 7823;7835 12.241 2.8932 1 1405100 + 3533 18243 1985 1988 3928;3929 3929 -0.06281208938048621 ANLLDDPNDG 10 Unmodified _ANLLDDPNDG_ 0 0 0 REV__nc|ENSG00000171723|Q9NQX3|GPHN REV__nc|ENSG00000171723|Q9NQX3|GPHN MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.235635 1042.45672 -0.77021 -0.00040223 0.99376 0.00051898 0.22355 0.00011675 522.2361751698255 41.725 0.42467 39.074 38.829 39.254 -2.651 0.0058118 0.00023057 NaN 12.241 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1178300 + 3534 18243 1985 1988 -0.06281208938048621 ANLVMTPQ 8 Unmodified _ANLVMTPQ_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.229248046875 2 437.228571 872.442588 NaN NaN NaN NaN NaN NaN NaN 106.23 1 102.14 101.64 102.64 -4.0913 0 0 0 0.21486 1 20425 20425 12.241 2.8932 1 3535 6335 1986 1989 3930 3930 0.0012646709998307415 ANMCQANGAY 10 Unmodified _ANMCQANGAY_ 0 0 0 ENSG00000128346|ENST00000403305|C22orf23 ENSG00000128346|ENST00000403305|C22orf23 ENSG00000128346|ENST00000403305|C22orf23 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2569580078125 2 521.707676 1041.4008 0.27996 0.00014606 -1.6702 -0.00087136 -1.3902 -0.0007253 522.2079201434003 125.08 0.53738 120.43 120.14 120.67 -4.6495 21 14 2 0 0 0 0.744 1 24072 24072 6.7232 0.51738 1 1307200 3536 3521 1987 1990 3931 3931 -0.11824456650879256 ANMEDLLIY 9 Unmodified _ANMEDLLIY_ 0 0 0 REV__ENSG00000180921|ENST00000388913|FAM83H REV__ENSG00000180921|ENST00000388913|FAM83H MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2783203125 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 115.82 1 111.34 110.84 111.84 -4.486 0 0 0 0.19638 1 22834 22834 14.957 4.0582 1 + 3537 18706 1988 1991 3932 3932 -0.02089029248213592 ANNLIAALR 9 Unmodified _ANNLIAALR_ 0 0 0 REV__ENSG00000009694|ENST00000371130|TENM1 REV__ENSG00000009694|ENST00000371130|TENM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73944091796875 2 478.287808 954.561064 NaN NaN NaN NaN NaN NaN NaN 65.405 1 61.947 61.447 62.447 -3.4581 0 0 0 0.13725 1 12237 12237 0.87518 0 1 + 3538 13910 1989 1992 3933 3933 0.08196582399989438 ANNLIAALR 9 Unmodified _ANNLIAALR_ 0 0 0 REV__ENSG00000009694|ENST00000371130|TENM1 REV__ENSG00000009694|ENST00000371130|TENM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73944091796875 2 478.287808 954.561064 NaN NaN NaN NaN NaN NaN NaN 65.413 1 61.955 61.455 62.455 -3.4581 0 0 0 0.052972 1 12239 12239 50.855 3.9342 1 + 3539 13910 1989 1992 3934 3934 0.08196582399989438 ANNTYFSL 8 Unmodified _ANNTYFSL_ 0 0 0 REV__ENST00000370339.7_1_20:61827244-61827448:-|nuORF REV__ENST00000370339.7_1_20:61827244-61827448:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24957275390625 2 465.2218 928.429047 NaN NaN NaN NaN NaN NaN NaN 94.531 1 90.659 90.159 91.159 -3.8727 0 0 0 0.22934 1 18137 18137 0.62683 0 1 + 3540 20979 1990 1993 3935 3935 -0.03803067407625349 ANRKKHRR 8 Unmodified _ANRKKHRR_ 0 0 0 AGAP1|p.L561Sfs*43|1|0.32|ENSG00000157985|chr2:236036594-236036594|C/-|frameshift_variant;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1 AGAP1|p.L561Sfs*43|1|0.32|ENSG00000157985|chr2:236036594-236036594|C/-|frameshift_variant AGAP1|p.L561Sfs*43|1|0.32|ENSG00000157985|chr2:236036594-236036594|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2701416015625 2 533.328665 1064.64278 NaN NaN NaN NaN NaN NaN NaN 150.5 1 145.38 144.88 145.88 -5.1204 0 0 0 0.2396 1 29166 29166 0 0 1 3541 93 1991 1994 3936 3936 0.11304122602450661 ANRRERRRVGL 11 Unmodified _ANRRERRRVGL_ 0 0 0 ENST00000481474.5_1_6:28876558-28891553:-|nuORF ENST00000481474.5_1_6:28876558-28891553:-|nuORF ENST00000481474.5_1_6:28876558-28891553:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5226745605469 3 461.611508 1381.8127 NaN NaN NaN NaN NaN NaN NaN 107.19 1 103.05 102.55 103.55 -4.135 0 0 0 0.23689 1 20615 20615 2.8433 0.4085 1 3542 10376 1992 1995 3937 3937 0.13706193814186918 ANSPSWDP 8 Unmodified _ANSPSWDP_ 0 0 0 REV__nc|ENSG00000143514|Q13625-2|TP53BP2 REV__nc|ENSG00000143514|Q13625-2|TP53BP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2198791503906 2 437.1905 872.366446 NaN NaN NaN NaN NaN NaN NaN 44.525 1 41.778 41.278 42.278 -2.7475 0 0 0 0.23811 1 8060 8060 0.62683 0 1 + 3543 16735 1993 1996 3938 3938 -0.0748421347581143 ANSSIAGISPY 11 Unmodified _ANSSIAGISPY_ 0 0 0 tr|U7T524|U7T524_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00280PE=4SV=1 tr|U7T524|U7T524_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00280PE=4SV=1 tr|U7T524|U7T524_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00280PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.275634765625 2 540.272021 1078.52949 -0.21121 -0.00011411 0.34012 0.00018376 0.12891 6.9646E-05 540.272137828355 36.053 0.59796 33.659 33.346 33.943 -2.3938 42 16 4 0 0 0 0.030442 1 6685 6685 0.2986 0.23473 1 6073300 3544 26447 1994 1997 3939 3939 -0.0066345514460408594 ANSSIAGISPY 11 Unmodified _ANSSIAGISPY_ 0 0 0 tr|U7T524|U7T524_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00280PE=4SV=1 tr|U7T524|U7T524_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00280PE=4SV=1 tr|U7T524|U7T524_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00280PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2755737304688 2 540.272021 1078.52949 0.23798 0.00012858 -0.042862 -2.3157E-05 0.19512 0.00010542 540.2719397391652 35.993 0.59839 33.74 33.466 34.065 -2.2527 47 16 4 0 0 0 0.030442 1 6386 6386 0.2986 0 1 6805500 3545 26447 1994 1997 3940 3940 -0.0066345514460408594 ANTCHLSK 8 Unmodified _ANTCHLSK_ 0 0 0 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2156982421875 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 88.572 1 84.822 84.322 85.322 -3.7501 0 0 0 0.21486 1 16957 16957 10.824 1.4765 1 3546 5059 1995 1998 3941 3941 -0.023875877026057424 ANTHFAQF 8 Unmodified _ANTHFAQF_ 0 0 0 REV__nc|ENSG00000182175|Q96B86-3|RGMA REV__nc|ENSG00000182175|Q96B86-3|RGMA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 468.25592041015625 2 468.222134 934.429715 NaN NaN NaN NaN NaN NaN NaN 92.874 1 89.03 88.53 89.53 -3.844 0 0 0 0.21323 1 17800 17800 14.582 0 1 3547 18763 1996 1999 3942 3942 -0.04012227967905346 APAAAAETRPQ 11 Unmodified _APAAAAETRPQ_ 0 0 0 REV__ENST00000484728.6_2_2:86088279-86116028:-|nuORF REV__ENST00000484728.6_2_2:86088279-86116028:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2806396484375 2 541.783087 1081.55162 0.16087 8.7156E-05 -2.0577 -0.0011148 -1.8968 -0.0010277 542.2857162195256 147.42 0.17426 142.26 142.13 142.3 -5.1558 6 4 2 0 0 0 0.88709 1 28533 28533 5.2969 0 1 1329100 + 3548 15436 1997 2000 3943 3943 0.014107693237747299 APAAAPPAEKA 11 Unmodified _APAAAPPAEKA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 497.27154541015625 2 497.271824 992.529095 NaN NaN NaN NaN NaN NaN NaN 166.2 1 161.25 160.75 161.75 -4.9484 0 0 0 0.2268 1 32541 32541 10.824 0 1 3549 7133 1998 2001 3944 3944 0.032531699261767244 APAAAQGQLPP 11 Unmodified _APAAAQGQLPP_ 0 0 0 REV__nc|ENSG00000147573|Q9BYV6-4|TRIM55 REV__nc|ENSG00000147573|Q9BYV6-4|TRIM55 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 510.7757568359375 2 510.777274 1019.53999 NaN NaN NaN NaN NaN NaN NaN 163.98 1 163.98 163.48 164.48 0 0 0 0 0.22085 1 33108 33108 13.906 2.2658 1 + 3550 16942 1999 2002 3945 3945 0.031005723004682295 APAADVRVM 9 Unmodified _APAADVRVM_ 0 0 0 ENST00000253233.5_1_12:123717606-123717849:+|nuORF ENST00000253233.5_1_12:123717606-123717849:+|nuORF ENST00000253233.5_1_12:123717606-123717849:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2484130859375 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 171.72 1 166.8 166.3 167.3 -4.9149 0 0 0 0.23508 1 34025 34025 11.64 0.81637 1 3551 8236 2000 2003 3946 3946 0.012935583655917071 APAAFGLVSF 10 Unmodified _APAAFGLVSF_ 0 0 0 nc|ENSG00000029364|Q9NUM3-3|SLC39A9;nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9 nc|ENSG00000029364|Q9NUM3-3|SLC39A9 nc|ENSG00000029364|Q9NUM3-3|SLC39A9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2535400390625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 148.83 1 148.83 148.33 149.33 0 0 0 0 0.22561 1 29787 29787 16.942 3.4344 1 3552 1151 2001 2004 3947 3947 0.027349729028628644 APAAFGLVSF 10 Unmodified _APAAFGLVSF_ 0 0 0 nc|ENSG00000029364|Q9NUM3-3|SLC39A9;nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9 nc|ENSG00000029364|Q9NUM3-3|SLC39A9 nc|ENSG00000029364|Q9NUM3-3|SLC39A9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2745666503906 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 148.9 1 148.9 148.4 149.4 0 0 0 0 0.22526 1 29803 29803 21.747 4.8044 1 3553 1151 2001 2004 3948 3948 0.027349729028628644 APAAHATPPP 10 Unmodified _APAAHATPPP_ 0 0 0 ENST00000398136.6_2_11:102323274-102323652:-|nuORF ENST00000398136.6_2_11:102323274-102323652:-|nuORF ENST00000398136.6_2_11:102323274-102323652:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2454833984375 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 22.236 1 22.236 21.736 22.736 0 0 0 0 0.22569 1 3754 3754 15.847 0 1 3554 9480 2002 2005 3949 3949 0.009566315832216787 APAAHLALIC 10 Unmodified _APAAHLALIC_ 0 0 0 REV__ENST00000283632.4_1_2:87001019-87001172:+|nuORF REV__ENST00000283632.4_1_2:87001019-87001172:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27301025390625 2 490.273312 978.532072 NaN NaN NaN NaN NaN NaN NaN 162.24 1 162.24 161.74 162.74 0 0 0 0 0.22588 1 32605 32605 12.532 0.89125 1 + 3555 20322 2003 2006 3950 3950 0.04194721779333577 APAAPPSVGPQ 11 Unmodified _APAAPPSVGPQ_ 0 0 0 REV__nc|ENSG00000115419|O94925-2|GLS REV__nc|ENSG00000115419|O94925-2|GLS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 496.2012634277344 2 496.263999 990.513445 NaN NaN NaN NaN NaN NaN NaN 163.42 1 158.38 157.88 158.88 -5.0446 0 0 0 0.21688 1 31804 31804 14.838 1.3304 1 + 3556 15429 2004 2007 3951 3951 0.017808834091511017 APAAPRGRARE 11 Unmodified _APAAPRGRARE_ 0 0 0 REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.324951171875 2 576.323245 1150.63194 NaN NaN NaN NaN NaN NaN NaN 158.18 1 152.9 152.4 153.4 -5.2712 0 0 0 0.22683 1 30688 30688 10.8 0 1 + 3557 17748 2005 2008 3952 3952 0.06264675437523692 APAAQAKMQ 9 Unmodified _APAAQAKMQ_ 0 0 0 REV__ENST00000485071.2_1_7:100173012-100174533:-|nuORF REV__ENST00000485071.2_1_7:100173012-100174533:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23748779296875 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 53.106 1 50.011 49.511 50.511 -3.0954 0 0 0 0.23508 1 9814 9814 12.532 0.89125 1 + 3558 22215 2006 2009 3953 3953 0.003732718485366604 APAAREVILVL 11 Unmodified _APAAREVILVL_ 0 0 0 nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4;TBC1D4|p.F159Sfs*16|1|0.14|ENSG00000136111|chr13:75481292-75481292|A/-|frameshift_variant;TBC1D4|p.S219Qfs*19|1|0.23|ENSG00000136111|chr13:75362452-75362452|G/-|frameshift_variant;TBC1D4|p.H517Pfs*9|1|0.07|ENSG00000136111|chr13:75341186-75341187|-/TCTTTAG|frameshift_variant nc|ENSG00000136111|O60343-2|TBC1D4 nc|ENSG00000136111|O60343-2|TBC1D4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3341674804688 2 576.360973 1150.70739 NaN NaN NaN NaN NaN NaN NaN 170.36 1 170.36 169.86 170.86 0 0 0 0 0.23199 1 35022 35022 6.7232 0.51738 1 3559 3983 2007 2010 3954 3954 0.13806839845233299 APAARLLLAGL 11 Unmodified _APAARLLLAGL_ 0 0 0 nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1;CLSTN1|p.P58Hfs*2|1|0.27|ENSG00000171603|chr1:9773313-9773313|G/-|frameshift_variant;CLSTN1|p.N221Tfs*5|2|0.36|ENSG00000171603|chr1:9749901-9749901|T/-|frameshift_variant nc|ENSG00000171603|O94985-2|CLSTN1 nc|ENSG00000171603|O94985-2|CLSTN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2753295898438 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 163.39 1 158.34 157.84 158.84 -5.0446 0 0 0 0.23199 1 31794 31794 6.7232 0.51738 1 3560 6156 2008 2011 3955 3955 0.14086588019335977 APACCCPECCS 11 Unmodified _APACCCPECCS_ 0 0 0 REV__ENSG00000221859|ENST00000380095|KRTAP10-10 REV__ENSG00000221859|ENST00000380095|KRTAP10-10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7857055664062 2 543.662708 1085.31086 0.34005 0.00018487 4.4808 0.002436 4.8208 0.0026209 544.1673200124628 150.38 0.13777 150.38 150.32 150.46 0 5 3 2 0 0 0 0.96156 1 30108 30108 1.4819 1.4819 1 2262900 + 3561 19708 2009 2012 3956 3956 -0.22837913637613383 APACCCPECCS 11 Unmodified _APACCCPECCS_ 0 0 0 REV__ENSG00000221859|ENST00000380095|KRTAP10-10 REV__ENSG00000221859|ENST00000380095|KRTAP10-10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7733764648438 2 543.662708 1085.31086 NaN NaN NaN NaN NaN NaN NaN 166.05 1 161.11 160.61 161.61 -4.9484 0 0 0 0.23634 1 32499 32499 3.2813 0.70383 1 + 3562 19708 2009 2012 3957 3957 -0.22837913637613383 APACFCCGGPR 11 Unmodified _APACFCCGGPR_ 0 0 0 ENST00000435880.6_1_2:70190354-70215932:-|nuORF ENST00000435880.6_1_2:70190354-70215932:-|nuORF ENST00000435880.6_1_2:70190354-70215932:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2593383789062 2 541.222439 1080.43033 NaN NaN NaN NaN NaN NaN NaN 158.61 1 158.61 158.11 159.11 0 0 0 0 0.23594 1 31847 31847 3.5965 0 1 3563 9832 2010 2013 3958 3958 -0.10667215906369165 APACHTPAPP 10 Unmodified _APACHTPAPP_ 0 0 0 REV__ENST00000397477.2_1_22:32667789-32668191:+|nuORF REV__ENST00000397477.2_1_22:32667789-32668191:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2330322265625 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 156.58 1 151.31 150.81 151.81 -5.2712 0 0 0 0.22561 1 30369 30369 16.942 5.302 1 + 3564 21305 2011 2014 3959 3959 -0.03307014668507691 APACICVHFY 10 Unmodified _APACICVHFY_ 0 0 0 ENST00000233121.6_1_2:27249948-27250056:+|nuORF ENST00000233121.6_1_2:27249948-27250056:+|nuORF ENST00000233121.6_1_2:27249948-27250056:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20428466796875 3 375.173629 1122.49906 NaN NaN NaN NaN NaN NaN NaN 41.142 1 41.142 40.642 41.642 0 0 0 0 0.22588 1 7670 7670 7.1017 3.5147 1 3565 8160 2012 2015 3960 3960 -0.05729228335007974 APADYNCPSCY 11 Unmodified _APADYNCPSCY_ 0 0 0 ENST00000525598.1_1_11:118982915-118984090:+|nuORF ENST00000525598.1_1_11:118982915-118984090:+|nuORF ENST00000525598.1_1_11:118982915-118984090:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2744140625 2 602.225899 1202.43724 0.39125 0.00023562 0.44043 0.00026524 0.83168 0.00050086 602.7263872176674 137.79 0.13699 137.79 137.7 137.83 0 5 3 2 0 0 0 0.96063 1 27348 27348 3.5965 1.2938 1 3700800 3566 10897 2013 2016 3961 3961 -0.15587624544809842 APADYNCPSCY 11 Unmodified _APADYNCPSCY_ 0 0 0 ENST00000525598.1_1_11:118982915-118984090:+|nuORF ENST00000525598.1_1_11:118982915-118984090:+|nuORF ENST00000525598.1_1_11:118982915-118984090:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3016357421875 2 602.225899 1202.43724 NaN NaN NaN NaN NaN NaN NaN 147.67 1 142.51 142.01 143.01 -5.1557 0 0 0 0.23594 1 28577 28577 3.5965 1.7523 1 3567 10897 2013 2016 3962 3962 -0.15587624544809842 APADYNCPSCY 11 Unmodified _APADYNCPSCY_ 0 0 0 ENST00000525598.1_1_11:118982915-118984090:+|nuORF ENST00000525598.1_1_11:118982915-118984090:+|nuORF ENST00000525598.1_1_11:118982915-118984090:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2919921875 2 602.225899 1202.43724 NaN NaN NaN NaN NaN NaN NaN 165.74 1 160.79 160.29 161.29 -4.9484 0 0 0 0.23594 1 32407 32407 3.5965 1.5367 1 3568 10897 2013 2016 3963 3963 -0.15587624544809842 APAEASPPA 9 Unmodified _APAEASPPA_ 0 0 0 REV__ENST00000604847.5_1_12:51773482-51785195:-|nuORF REV__ENST00000604847.5_1_12:51773482-51785195:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.322509765625 2 405.703243 809.391933 0.17022 6.9059E-05 -0.11202 -4.5446E-05 0.058202 2.3613E-05 405.7031750826689 31.122 0.80436 29.005 28.719 29.523 -2.1167 37 22 2 0 0 0 0.37212 1 5626 5626 32.117 10.37 1 2910300 + 3569 23445 2014 2017 3964 3964 -0.020387389533880196 APAEASPPA 9 Unmodified _APAEASPPA_ 0 0 0 REV__ENST00000604847.5_1_12:51773482-51785195:-|nuORF REV__ENST00000604847.5_1_12:51773482-51785195:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 405.703243 809.391933 0.28726 0.00011654 -0.23862 -9.6809E-05 0.048644 1.9735E-05 405.70308609373626 31.041 0.59549 29.015 28.707 29.302 -2.0264 -0.017947 -0.0001348 NaN 24.674 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3070600 + 3570 23445 2014 2017 -0.020387389533880196 APAEASPPA 9 Unmodified _APAEASPPA_ 0 0 0 REV__ENST00000604847.5_1_12:51773482-51785195:-|nuORF REV__ENST00000604847.5_1_12:51773482-51785195:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 405.703243 809.391933 0.03252 1.3194E-05 0.094959 3.8525E-05 0.12748 5.1719E-05 405.7031953892448 31.215 0.59793 29.067 28.776 29.374 -2.1483 0.033838 0.00013587 NaN 24.674 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1857500 + 3571 23445 2014 2017 -0.020387389533880196 APAEATPPG 9 Unmodified _APAEATPPG_ 0 0 0 REV__ENST00000171111.9_2_19:10610689-10614227:-|nuORF REV__ENST00000171111.9_2_19:10610689-10614227:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.21197509765625 2 405.703243 809.391933 0.038853 1.5763E-05 -0.02358 -9.5664E-06 0.015273 6.1963E-06 405.703156725196 29.045 0.79939 29.045 28.67 29.469 0 46 22 3 0 0 0 0.85699 1 5250 5250 2.3027 1.5091 1 4481400 + 3572 19982 2015 2018 3965 3965 -0.020387389533880196 APAEEEEEEPD 11 Unmodified _APAEEEEEEPD_ 0 0 0 REV__ENST00000544307.1_1_12:20725060-20833202:+|nuORF REV__ENST00000544307.1_1_12:20725060-20833202:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.766357421875 2 622.743687 1243.47282 0.60164 0.00037467 -2.3613 -0.0014705 -1.7597 -0.0010958 622.7432792518034 69.609 0.13905 66.062 65.965 66.104 -3.5478 5 3 2 0 0 0 0.96084 1 13097 13097 0.30703 0 1 1260200 + 3573 18294 2016 2019 3966 3966 -0.13917592282450642 APAEHPSRF 9 Unmodified _APAEHPSRF_ 0 0 0 REV__ENST00000171111.9_2_19:10597487-10599947:-|nuORF REV__ENST00000171111.9_2_19:10597487-10599947:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 506.18890380859375 2 506.253966 1010.49338 0.2195 0.00011112 4.2857 0.0021697 4.5052 0.0022808 506.2562499847537 145.71 0.34619 140.71 140.57 140.91 -5 15 9 3 0 0 0 0.79204 1 28169 28169 11.64 4.3511 1 7405400 + 3574 19981 2017 2020 3967 3967 -0.01144867530808824 APAEHPSRF 9 Unmodified _APAEHPSRF_ 0 0 0 REV__ENST00000171111.9_2_19:10597487-10599947:-|nuORF REV__ENST00000171111.9_2_19:10597487-10599947:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 506.253966 1010.49338 0.010118 5.1225E-06 4.2602 0.0021568 4.2703 0.0021619 506.2565399514208 145.26 0.24089 140.59 140.48 140.72 -4.6694 -0.05795 -1.143E-05 NaN 11.64 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 4526300 + 3575 19981 2017 2020 -0.01144867530808824 APAEMRDHQCC 11 Unmodified _APAEMRDHQCC_ 0 0 0 REV__ENST00000360814.8_1_12:104387270-104390561:-|nuORF REV__ENST00000360814.8_1_12:104387270-104390561:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7496337890625 2 630.74955 1259.48455 NaN NaN NaN NaN NaN NaN NaN 161.53 1 156.74 156.24 157.24 -4.7898 0 0 0 0.23634 1 32124 32124 3.2813 1.2216 1 + 3576 20872 2018 2021 3968 3968 -0.1348166854545525 APAEMRDHQCC 11 Unmodified _APAEMRDHQCC_ 0 0 0 REV__ENST00000360814.8_1_12:104387270-104390561:-|nuORF REV__ENST00000360814.8_1_12:104387270-104390561:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7386474609375 2 630.74955 1259.48455 NaN NaN NaN NaN NaN NaN NaN 166.01 1 161.22 160.72 161.72 -4.7898 0 0 0 0.22632 1 33298 33298 0.0059557 0 1 + 3577 20872 2018 2021 3969 3969 -0.1348166854545525 APAESSAAAAA 11 Unmodified _APAESSAAAAA_ 0 0 0 REV__RASA2|p.S88Qfs*2|1|0.25|ENSG00000155903|chr3:141516331-141516332|-/T|frameshift_variant REV__RASA2|p.S88Qfs*2|1|0.25|ENSG00000155903|chr3:141516331-141516332|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2347717285156 2 458.722164 915.429775 0.28726 0.00013177 -0.23862 -0.00010946 0.048646 2.2315E-05 458.72205351389795 29.428 0.79407 29.428 29.125 29.919 0 36 22 2 0 0 0 0.76241 1 5288 5288 22.736 4.5899 1 1874600 + 3578 17232 2019 2022 3970 3970 -0.03132272758580257 APAFCDHCGEM 11 Unmodified _APAFCDHCGEM_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;ENST00000597088.1_1_19:47214155-47217219:-|nuORF;PRKD1|p.R202Pfs*22|1|0.09|ENSG00000184304|chr14:29663791-29663792|-/GGTATGG|frameshift_variant;PRKD1|p.S448Vfs*28|1|0.08|ENSG00000184304|chr14:29632913-29632919|ATTTGCT/-|frameshift_variant;PRKD2|p.D633Tfs*5|1|0.38|ENSG00000105287|chr19:46689611-46689611|C/-|frameshift_variant;PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant;ENSG00000184304|ENST00000331968|PRKD1 ENSG00000105287|ENST00000291281|PRKD2;PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant ENSG00000105287|ENST00000291281|PRKD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.7779541015625 2 590.714644 1179.41474 NaN NaN NaN NaN NaN NaN NaN 173.45 1 173.45 172.95 173.95 0 0 0 0 0.23698 1 35870 35870 1.4819 0.28856 1 3579 2294;6902 2020 2023 3971 3971 -0.16779547214082413 APAFLFLHQ 9 Unmodified _APAFLFLHQ_ 0 0 0 ENST00000380548.8_1_9:18770742-18777100:+|nuORF ENST00000380548.8_1_9:18770742-18777100:+|nuORF ENST00000380548.8_1_9:18770742-18777100:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.276611328125 2 522.287277 1042.56 0.20201 0.00010551 2.7846 0.0014543 2.9866 0.0015598 522.2894428275622 137.18 0.13582 137.18 137.1 137.23 0 5 3 2 0 0 0 0.52414 1 27206 27206 18.135 1.0221 1 2281200 3580 9317 2021 2024 3972 3972 0.04042368031082333 APAGAQCHKAK 11 Unmodified _APAGAQCHKAK_ 0 0 0 REV__ENST00000459635.1_1_1:110033652-110034687:+|nuORF REV__ENST00000459635.1_1_1:110033652-110034687:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2815551757812 2 541.2822 1080.54985 NaN NaN NaN NaN NaN NaN NaN 168.33 1 168.33 167.83 168.83 0 0 0 0 0.22085 1 34466 34466 13.906 0.86358 1 + 3581 17516 2022 2025 3973 3973 0.012794370342135153 APAGAQCHKAK 11 Unmodified _APAGAQCHKAK_ 0 0 0 REV__ENST00000459635.1_1_1:110033652-110034687:+|nuORF REV__ENST00000459635.1_1_1:110033652-110034687:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2798461914062 2 541.2822 1080.54985 NaN NaN NaN NaN NaN NaN NaN 168.63 1 168.63 168.13 169.13 0 0 0 0 0.224 1 34553 34553 13.042 1.5478 1 + 3582 17516 2022 2025 3974 3974 0.012794370342135153 APAGGACH 8 Unmodified _APAGGACH_ 0 0 0 ENSG00000160951|ENST00000292513|PTGER1 ENSG00000160951|ENST00000292513|PTGER1 ENSG00000160951|ENST00000292513|PTGER1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 682.941162109375 1 683.29297 682.285694 1.0204 0.00069721 -1.9453 -0.0013292 -0.92497 -0.00063203 683.2871852402079 165.55 0.17059 160.76 160.64 160.81 -4.7898 5 4 2 0 0 0 1.0035 1 33153 33153 6.3541 3.4649 1 14017000 3583 5276 2023 2026 3975 3975 -0.06815772999698311 APAGKGLKILL 11 Unmodified _APAGKGLKILL_ 0 0 0 ENST00000320954.10_2_3:33187460-33187940:+|nuORF ENST00000320954.10_2_3:33187460-33187940:+|nuORF ENST00000320954.10_2_3:33187460-33187940:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2786254882812 2 540.860609 1079.70667 NaN NaN NaN NaN NaN NaN NaN 173.68 1 168.89 168.39 169.39 -4.7898 0 0 0 0.2366 1 35443 35443 6.7232 2.3939 1 3584 8716 2024 2027 3976 3976 0.17000045196186875 APAGLGEPQLE 11 Unmodified _APAGLGEPQLE_ 0 0 0 nc|ENSG00000143768|O00292-2|LEFTY2;ENSG00000243709|ENST00000272134|LEFTY1;ENSG00000143768|ENST00000366820|LEFTY2 nc|ENSG00000143768|O00292-2|LEFTY2 nc|ENSG00000143768|O00292-2|LEFTY2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2789916992188 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 174.14 1 174.14 173.64 174.64 0 0 0 0 0.22862 1 36038 36038 9.3831 1.473 1 3585 4517 2025 2028 3977 3977 0.008088313724556428 APAGLRGWRAP 11 Unmodified _APAGLRGWRAP_ 0 0 0 REV__ENST00000588681.5_1_19:11494800-11494992:-|nuORF REV__ENST00000588681.5_1_19:11494800-11494992:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3278198242188 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 172.36 1 167.48 166.98 167.98 -4.881 0 0 0 0.22862 1 34206 34206 9.3831 0.63772 1 + 3586 23298 2026 2029 3978 3978 0.06666764931219404 APAGPRQPGSQ 11 Unmodified _APAGPRQPGSQ_ 0 0 0 REV__ENST00000399409.7_1_14:24740416-24740749:-|nuORF REV__ENST00000399409.7_1_14:24740416-24740749:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2776489257812 2 533.275429 1064.53631 NaN NaN NaN NaN NaN NaN NaN 170.73 1 165.86 165.36 166.36 -4.873 0 0 0 0.22862 1 33803 33803 9.3831 2.0939 1 + 3587 21342 2027 2030 3979 3979 0.006619025266218159 APAGRRSK 8 Unmodified _APAGRRSK_ 0 0 0 nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT;nc|ENSG00000197114|Q8N5A5-4|ZGPAT nc|ENSG00000197114|Q8N5A5-3|ZGPAT nc|ENSG00000197114|Q8N5A5-3|ZGPAT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.3359069824219 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 142.74 1 137.84 137.34 138.34 -4.8982 0 0 0 0.21486 1 27544 27544 6.3541 0.59368 1 3588 7329 2028 2031 3980 3980 0.061148733972345326 APAGVREVM 9 Unmodified _APAGVREVM_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2455139160156 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 164.86 1 160.07 159.57 160.57 -4.7898 0 0 0 0.23411 1 32974 32974 13.508 1.8676 1 3589 12458 2029 2032 3981 3981 0.012935583655917071 APAHPLRRLG 10 Unmodified _APAHPLRRLG_ 0 0 0 ENST00000493232.5_1_7:2578318-2579295:-|nuORF;ENST00000473879.1_1_7:2578318-2580643:-|nuORF ENST00000493232.5_1_7:2578318-2579295:-|nuORF ENST00000493232.5_1_7:2578318-2579295:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.774658203125 2 544.327799 1086.64105 0.21206 0.00011543 0.44052 0.00023979 0.65259 0.00035522 544.8294090461774 165.69 0.21623 160.71 160.56 160.77 -4.9811 6 5 2 0 0 0 0.8888 1 32384 32384 11.64 4.9171 1 9387700 3590 10247 2030 2033 3982 3982 0.10119068793846964 APAIARHAR 9 Unmodified _APAIARHAR_ 0 0 0 REV__ENSG00000278803|ENST00000458091|PWWP4 REV__ENSG00000278803|ENST00000458091|PWWP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7847900390625 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 173.87 1 168.98 168.48 169.48 -4.8845 0 0 0 0.23508 1 34529 34529 9.3474 1.4373 1 + 3591 19949 2031 2034 3983 3983 0.07466537696939213 APAIHSAPVP 10 Unmodified _APAIHSAPVP_ 0 0 0 REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76904296875 2 480.269084 958.523616 -0.030816 -1.48E-05 -0.14182 -6.8113E-05 -0.17264 -8.2913E-05 480.269140523495 121.57 1.1026 121.57 120.93 122.03 0 104 30 5 0 0 0 0.65405 2 23905 23863;23905 15.847 1.3304 1 47642000 + 3592 13114 2032 2035 3984;3985 3985 0.042694911343687636 APAIKWAFMLL 11 Unmodified _APAIKWAFMLL_ 0 0 0 REV__nc|ENSG00000128918|O94788-4|ALDH1A2 REV__nc|ENSG00000128918|O94788-4|ALDH1A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7745361328125 2 630.862295 1259.71004 NaN NaN NaN NaN NaN NaN NaN 142.4 1 142.4 141.9 142.9 0 0 0 0 0.20277 1 28390 28390 18.146 5.9057 1 + 3593 15940 2033 2036 3986 3986 0.09056971978520778 APAKFLGK 8 Unmodified _APAKFLGK_ 0 0 0 ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 416.25762939453125 2 416.257988 830.501424 NaN NaN NaN NaN NaN NaN NaN 75.865 1 72.231 71.731 72.731 -3.6337 0 0 0 0.21486 1 14429 14429 5.2307 2.6532 1 3594 3958 2034 2037 3987 3987 0.07939311456630094 APAKKRRRR 9 Unmodified _APAKKRRRR_ 0 0 0 ENST00000485891.1_1_2:75745265-75787829:-|nuORF ENST00000485891.1_1_2:75745265-75787829:-|nuORF ENST00000485891.1_1_2:75745265-75787829:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 569.7964477539062 2 569.87324 1137.73193 NaN NaN NaN NaN NaN NaN NaN 171.65 1 171.65 171.15 172.15 0 0 0 0 0.19624 1 35379 35379 0.0033805 0.0019993 1 3595 10447 2035 2038 3988 3988 0.1685695756198129 APAKRKVRR 9 Unmodified _APAKRKVRR_ 0 0 0 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2689208984375 2 541.356891 1080.69923 0.21946 0.0001188 -0.4197 -0.00022721 -0.20025 -0.0001084 541.8567012266661 135.58 0.20506 130.94 130.8 131.01 -4.6399 7 5 2 0 0 0 0.87788 1 26716 26716 2.3027 1.778 1 969540 + 3596 24010 2036 2039 3989 3989 0.16210750439131516 APALEKASCGP 11 Unmodified _APALEKASCGP_ 0 0 0 REV__ENSG00000181789|ENST00000314797|COPG1 REV__ENSG00000181789|ENST00000314797|COPG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2616577148438 2 522.263142 1042.51173 NaN NaN NaN NaN NaN NaN NaN 173.83 1 168.95 168.45 169.45 -4.8845 0 0 0 0.23018 1 34520 34520 8.1555 1.4324 1 + 3597 18739 2037 2040 3990 3990 -0.007824936711358532 APALGKLGLLI 11 Unmodified _APALGKLGLLI_ 0 0 0 REV__ENSG00000184584|ENST00000330794|STING1 REV__ENSG00000184584|ENST00000330794|STING1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2799682617188 2 533.35516 1064.69577 NaN NaN NaN NaN NaN NaN NaN 174.16 1 174.16 173.66 174.66 0 0 0 0 0.22632 1 36043 36043 0.0059557 0.0025752 1 + 3598 18906 2038 2041 3991 3991 0.16600642821890688 APALGLGHNL 10 Unmodified _APALGLGHNL_ 0 0 0 ENST00000591325.1_1_19:58790629-58791205:+|nuORF ENST00000591325.1_1_19:58790629-58791205:+|nuORF ENST00000591325.1_1_19:58790629-58791205:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7755126953125 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 142.04 1 137.4 136.9 137.9 -4.6493 0 0 0 0.22552 1 28072 28072 18.135 3.5533 1 3599 11619 2039 2042 3992 3992 0.05220893508669633 APALGQHRCQ 10 Unmodified _APALGQHRCQ_ 0 0 0 ENST00000466757.7_1_10:73472535-73475261:+|nuORF;ENST00000442677.3_1_10:73474904-73475261:+|nuORF ENST00000466757.7_1_10:73472535-73475261:+|nuORF ENST00000466757.7_1_10:73472535-73475261:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 540.8056030273438 2 540.772 1079.52945 NaN NaN NaN NaN NaN NaN NaN 147.75 1 143.04 142.54 143.54 -4.7095 0 0 0 0.22588 1 29327 29327 7.9102 0.62092 1 3600 10138 2040 2043 3993 3993 -0.0071373362559370435 APALLLLALLL 11 Unmodified _APALLLLALLL_ 0 0 0 ENSG00000184471|ENST00000328449|C1QTNF8 ENSG00000184471|ENST00000328449|C1QTNF8 ENSG00000184471|ENST00000328449|C1QTNF8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 561.4437866210938 2 560.888835 1119.76312 -0.057101 -3.2027E-05 -0.42591 -0.00023889 -0.48301 -0.00027091 560.8901344711618 132.43 0.14841 127.79 127.69 127.84 -4.6399 5 3 2 0 0 0 0.80035 1 26115 26115 3.5965 2.1146 1 1923600 3601 6911 2041 2044 3994 3994 0.20802673032835628 APALPAPASPA 11 Unmodified _APALPAPASPA_ 0 0 0 ENST00000579329.1_1_17:61776106-61776331:-|nuORF ENST00000579329.1_1_17:61776106-61776331:-|nuORF ENST00000579329.1_1_17:61776106-61776331:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7697448730469 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 174.47 1 169.68 169.18 170.18 -4.7898 0 0 0 0.22775 1 35644 35644 10.074 0.72649 1 3602 11484 2042 2045 3995 3995 0.040980714145121055 APALRFTTLK 10 Unmodified _APALRFTTLK_ 0 0 0 ENST00000532832.5_1_11:102218051-102219410:+|nuORF ENST00000532832.5_1_11:102218051-102219410:+|nuORF ENST00000532832.5_1_11:102218051-102219410:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.5490417480469 3 373.229119 1116.66553 -0.24225 -9.0416E-05 0.18192 6.7898E-05 -0.060332 -2.2518E-05 373.22911418031873 45.41 0.60159 42.569 42.259 42.861 -2.8409 48 16 4 0 0 0 0.75587 1 8547 8547 3.8763 0.28927 1 6513100 3603 10986 2043 2046 3996 3996 0.11186284156701731 APALRFTTLK 10 Unmodified _APALRFTTLK_ 0 0 0 ENST00000532832.5_1_11:102218051-102219410:+|nuORF ENST00000532832.5_1_11:102218051-102219410:+|nuORF ENST00000532832.5_1_11:102218051-102219410:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 373.229119 1116.66553 0.055452 2.0696E-05 -0.17569 -6.5573E-05 -0.12024 -4.4877E-05 373.22903406427326 42.655 0.5314 42.655 42.422 42.953 0 0.028023 -0.00018111 NaN 3.8763 39 14 4 NaN NaN NaN NaN 0 NaN NaN 0 5316400 3604 10986 2043 2046 0.11186284156701731 APALRFTTLK 10 Unmodified _APALRFTTLK_ 0 0 0 ENST00000532832.5_1_11:102218051-102219410:+|nuORF ENST00000532832.5_1_11:102218051-102219410:+|nuORF ENST00000532832.5_1_11:102218051-102219410:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 373.229119 1116.66553 -0.016982 -6.338E-06 -0.11653 -4.3493E-05 -0.13351 -4.9831E-05 373.2290120315598 45.522 0.59172 42.656 42.342 42.934 -2.8653 0.029422 -0.00011486 NaN 3.8763 44 16 4 NaN NaN NaN NaN 0 NaN NaN 0 5218600 3605 10986 2043 2046 0.11186284156701731 APALRRALLS 10 Unmodified _APALRRALLS_ 0 0 0 ALDH4A1|p.A481Qfs*17|1|0.41|ENSG00000159423|chr1:18875401-18875401|C/-|frameshift_variant;ENSG00000159423|ENST00000375341|ALDH4A1;ALDH4A1|p.S191Efs*21|1|0.3|ENSG00000159423|chr1:18883312-18883313|-/G|frameshift_variant;nc|ENSG00000159423|P30038-3|ALDH4A1 ALDH4A1|p.A481Qfs*17|1|0.41|ENSG00000159423|chr1:18875401-18875401|C/-|frameshift_variant ALDH4A1|p.A481Qfs*17|1|0.41|ENSG00000159423|chr1:18875401-18875401|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.08599853515625 3 356.560981 1066.66111 -0.34779 -0.00012401 0.089491 3.1909E-05 -0.2583 -9.2099E-05 356.56101976830837 43.606 1.1219 40.886 40.444 41.565 -2.7191 38 31 2 0 0 0 0.91149 1 8262 8262 2.086 0 1 841890 3606 122 2044 2047 3997 3997 0.1304481973379552 APALRRRARL 10 Unmodified _APALRRRARL_ 0 0 0 ENST00000528638.1_1_11:77300495-77320419:+|nuORF ENST00000528638.1_1_11:77300495-77320419:+|nuORF ENST00000528638.1_1_11:77300495-77320419:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.27587890625 2 590.380897 1178.74724 0.48253 0.00028488 -1.825 -0.0010775 -1.3425 -0.00079257 590.3779200500747 137.29 0.17662 132.65 132.55 132.73 -4.6413 6 4 2 0 0 0 0.91149 1 27086 27086 0.45834 0 1 1272300 3607 10939 2045 2048 3998 3998 0.16501824359170314 APALRRRARL 10 Unmodified _APALRRRARL_ 0 0 0 ENST00000528638.1_1_11:77300495-77320419:+|nuORF ENST00000528638.1_1_11:77300495-77320419:+|nuORF ENST00000528638.1_1_11:77300495-77320419:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2703247070312 2 590.380897 1178.74724 NaN NaN NaN NaN NaN NaN NaN 85.721 1 81.992 81.492 82.492 -3.7289 0 0 0 0.22588 1 16380 16380 4.3292 0.73274 1 3608 10939 2045 2048 3999 3999 0.16501824359170314 APALVAVKPL 10 Unmodified _APALVAVKPL_ 0 0 0 EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF;EPG5|p.Y1902Ifs*26|3|0.23|ENSG00000152223|chr18:45879178-45879178|A/-|frameshift_variant;EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2699890136719 2 489.820953 977.627353 NaN NaN NaN NaN NaN NaN NaN 155.34 1 150.56 150.06 151.06 -4.7791 0 0 0 0.22588 1 30879 30879 4.3292 0 1 3609 4910 2046 2049 4000 4000 0.1376439824202862 APAMRRFLT 9 Unmodified _APAMRRFLT_ 0 0 0 REV__ENST00000458578.6_1_22:21977533-21977611:+|nuORF REV__ENST00000458578.6_1_22:21977533-21977611:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 531.6683959960938 2 531.797486 1061.58042 NaN NaN NaN NaN NaN NaN NaN 172.2 1 167.41 166.91 167.91 -4.7898 0 0 0 0.23508 1 35066 35066 5.2307 0.47466 1 + 3610 21865 2047 2050 4001 4001 0.052092154192450835 APANGGGS 8 Unmodified _APANGGGS_ 0 0 0 REV__ENSG00000180815|ENST00000338883|MAP3K15 REV__ENSG00000180815|ENST00000338883|MAP3K15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7509155273438 1 630.28418 629.276903 0.41198 0.00025966 2.9152 0.0018374 3.3271 0.002097 630.2892999918229 164.43 0.1059 164.43 164.36 164.47 0 4 2 2 0 0 0 1.0244 1 33258 33258 6.3541 0 1 8822100 + 3611 18699 2048 2051 4002 4002 -0.05256423364517104 APANGGGS 8 Unmodified _APANGGGS_ 0 0 0 REV__ENSG00000180815|ENST00000338883|MAP3K15 REV__ENSG00000180815|ENST00000338883|MAP3K15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7532958984375 1 630.28418 629.276903 0.77032 0.00048552 2.9756 0.0018755 3.7459 0.002361 630.2850565303195 122.2 0.17517 117.52 117.4 117.58 -4.6873 6 4 2 0 0 0 1.0244 1 23446 23446 2.8892 2.0956 1 871630 + 3612 18699 2048 2051 4003 4003 -0.05256423364517104 APAPAAEEEEC 11 Unmodified _APAPAAEEEEC_ 0 0 0 REV__CAPRIN1|p.S264P|1|0.32|ENSG00000135387|chr11:34079729-34079729|T/C|missense_variant REV__CAPRIN1|p.S264P|1|0.32|ENSG00000135387|chr11:34079729-34079729|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 558.7261962890625 2 558.729329 1115.4441 NaN NaN NaN NaN NaN NaN NaN 165.8 1 160.82 160.32 161.32 -4.9811 0 0 0 0.23199 1 32441 32441 6.7232 2.3939 1 + 3613 13257 2049 2052 4004 4004 -0.10899988392588966 APAPAAQGTSS 11 Unmodified _APAPAAQGTSS_ 0 0 0 nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF nc|ENSG00000072310|P36956-3|SREBF1 nc|ENSG00000072310|P36956-3|SREBF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7370910644531 2 479.235439 956.456324 -1.1968 -0.00057354 0.9957 0.00047718 -0.20108 -9.6365E-05 479.2360604874112 18.307 0.47912 16.792 16.541 17.02 -1.5148 16 13 2 0 0 0 0.96156 1 2719 2719 3.5965 0.70727 1 250260 3614 1463 2050 2053 4005 4005 -0.023645838672223363 APAPADSISRL 11 Unmodified _APAPADSISRL_ 0 0 0 REV__ENSG00000168476|ENST00000306306|REEP4 REV__ENSG00000168476|ENST00000306306|REEP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 549.431640625 2 549.301113 1096.58767 0.22045 0.00012109 -3.8639 -0.0021225 -3.6435 -0.0020014 549.2974216508183 163.59 0.17361 158.54 158.44 158.62 -5.0446 6 4 2 0 0 0 0.71361 1 31818 31818 10.824 0.75 1 4358400 + 3615 18028 2051 2054 4006 4006 0.04324226500648365 APAPALWGF 9 Unmodified _APAPALWGF_ 0 0 0 REV__ENST00000602583.5_1_16:85741395-85741617:-|nuORF REV__ENST00000602583.5_1_16:85741395-85741617:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2458801269531 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 160.93 1 160.93 160.43 161.43 0 0 0 0 0.23048 1 32314 32314 14.582 4.5078 1 + 3616 23428 2052 2055 4007 4007 0.013587210769401281 APAPALWGF 9 Unmodified _APAPALWGF_ 0 0 0 REV__ENST00000602583.5_1_16:85741395-85741617:-|nuORF REV__ENST00000602583.5_1_16:85741395-85741617:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2459716796875 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 161.17 1 161.17 160.67 161.67 0 0 0 0 0.23048 1 32366 32366 14.582 4.5078 1 + 3617 23428 2052 2055 4008 4008 0.013587210769401281 APAPALWGF 9 Unmodified _APAPALWGF_ 0 0 0 REV__ENST00000602583.5_1_16:85741395-85741617:-|nuORF REV__ENST00000602583.5_1_16:85741395-85741617:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2475891113281 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 161.5 1 161.5 161 162 0 0 0 0 0.23048 1 32438 32438 14.582 4.5078 1 + 3618 23428 2052 2055 4009 4009 0.013587210769401281 APAPAPQADEV 11 Unmodified _APAPAPQADEV_ 0 0 0 REV__GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant REV__GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2661743164062 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 169.42 1 164.63 164.13 165.13 -4.7898 0 0 0 0.2268 1 34317 34317 10.824 0.75 1 + 3619 16624 2053 2056 4010 4010 -0.015837416616705013 APAPARASDLP 11 Unmodified _APAPARASDLP_ 0 0 0 nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6 nc|ENSG00000169435|Q6ZTQ3-3|RASSF6 nc|ENSG00000169435|Q6ZTQ3-3|RASSF6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2871704101562 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 170.81 1 165.9 165.4 166.4 -4.9149 0 0 0 0.21688 1 33788 33788 14.838 3.198 1 3620 12454 2054 2057 4011 4011 0.031759573291765264 APAPARRSAGK 11 Unmodified _APAPARRSAGK_ 0 0 0 AFF3|p.T616Rfs*30|1|0.17|ENSG00000144218|chr2:99593816-99593816|C/-|frameshift_variant;AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant;ENSG00000144218|ENST00000672756|AFF3;nc|ENSG00000144218|P51826-2|AFF3 AFF3|p.T616Rfs*30|1|0.17|ENSG00000144218|chr2:99593816-99593816|C/-|frameshift_variant AFF3|p.T616Rfs*30|1|0.17|ENSG00000144218|chr2:99593816-99593816|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2679443359375 2 541.314889 1080.61522 NaN NaN NaN NaN NaN NaN NaN 165.41 1 160.43 159.93 160.93 -4.9811 0 0 0 0.20277 1 32325 32325 18.146 5.1039 1 3621 91 2055 2058 4012 4012 0.0781417455157225 APAPARRSAGK 11 Unmodified _APAPARRSAGK_ 0 0 0 AFF3|p.T616Rfs*30|1|0.17|ENSG00000144218|chr2:99593816-99593816|C/-|frameshift_variant;AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant;ENSG00000144218|ENST00000672756|AFF3;nc|ENSG00000144218|P51826-2|AFF3 AFF3|p.T616Rfs*30|1|0.17|ENSG00000144218|chr2:99593816-99593816|C/-|frameshift_variant AFF3|p.T616Rfs*30|1|0.17|ENSG00000144218|chr2:99593816-99593816|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2640991210938 2 541.314889 1080.61522 NaN NaN NaN NaN NaN NaN NaN 169 1 164.13 163.63 164.63 -4.873 0 0 0 0.224 1 33359 33359 13.042 4.2971 1 3622 91 2055 2058 4013 4013 0.0781417455157225 APAPCRPAP 9 Unmodified _APAPCRPAP_ 0 0 0 REV__ENST00000383814.7_2_3:9957103-9957559:+|nuORF REV__ENST00000383814.7_2_3:9957103-9957559:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 440.1053466796875 2 440.228905 878.443257 NaN NaN NaN NaN NaN NaN NaN 114.13 1 109.66 109.16 110.16 -4.4726 0 0 0 0.23508 1 22490 22490 8.5933 0 1 + 3623 21187 2056 2059 4014 4014 -0.0008269346031966052 APAPCRPQ 8 Unmodified _APAPCRPQ_ 0 0 0 REV__ENSG00000254470|ENST00000532090|AP5B1 REV__ENSG00000254470|ENST00000532090|AP5B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4657592773438 1 839.419233 838.411957 0.42747 0.00035883 0.68948 0.00057876 1.117 0.00093759 839.4207644055732 166.86 0.17358 161.91 161.8 161.98 -4.948 5 4 2 0 0 0 0.76728 1 32748 32748 5.7604 0 1 9273100 + 3624 19847 2057 2060 4015 4015 -0.013712664944137032 APAPCRPQ 8 Unmodified _APAPCRPQ_ 0 0 0 REV__ENSG00000254470|ENST00000532090|AP5B1 REV__ENSG00000254470|ENST00000532090|AP5B1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 839.419233 838.411957 0.42747 0.00035883 0.68948 0.00057876 1.117 0.00093759 839.4207644055732 166.86 0.17358 161.91 161.8 161.98 -4.948 0 0 NaN 5.7604 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 9273100 + 3625 19847 2057 2060 -0.013712664944137032 APAPGLTRPW 10 Unmodified _APAPGLTRPW_ 0 0 0 REV__nc|ENSG00000214851|Q8N6U2|LINC00612 REV__nc|ENSG00000214851|Q8N6U2|LINC00612 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2615966796875 2 533.295633 1064.57671 NaN NaN NaN NaN NaN NaN NaN 162.68 1 162.68 162.18 163.18 0 0 0 0 0.22588 1 32724 32724 12.532 1.7076 1 + 3626 24269 2058 2061 4016 4016 0.04700868917029766 APAPGPVPALI 11 Unmodified _APAPGPVPALI_ 0 0 0 REV__ENSG00000102271|ENST00000373119|KLHL4 REV__ENSG00000102271|ENST00000373119|KLHL4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 502.30560302734375 2 501.80276 1001.59097 0.20195 0.00010134 -0.18047 -9.0561E-05 0.021477 1.0777E-05 502.30405076745166 151.56 0.20604 151.56 151.41 151.62 0 9 5 2 0 0 0 0.71361 1 30350 30350 10.824 0 1 1176600 + 3627 14831 2059 2062 4017 4017 0.09023521345329755 APAPGPVPALI 11 Unmodified _APAPGPVPALI_ 0 0 0 REV__ENSG00000102271|ENST00000373119|KLHL4 REV__ENSG00000102271|ENST00000373119|KLHL4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 501.80276 1001.59097 0.20195 0.00010134 -0.18047 -9.0561E-05 0.021477 1.0777E-05 502.30405076745166 151.56 0.20604 151.56 151.41 151.62 0 0 0 NaN 10.824 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1176600 + 3628 14831 2059 2062 0.09023521345329755 APAPKMGEQ 9 Unmodified _APAPKMGEQ_ 0 0 0 REV__ENST00000591462.5_1_19:11560227-11561639:+|nuORF REV__ENST00000591462.5_1_19:11560227-11561639:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25604248046875 2 464.731477 927.448402 -0.37427 -0.00017394 0.32057 0.00014898 -0.053706 -2.4959E-05 464.73160968632016 23.752 0.45102 21.963 21.699 22.15 -1.7886 16 12 2 0 0 0 0.8319 1 3796 3796 12.532 5.2423 1 648730 + 3629 23335 2060 2063 4018 4018 -0.018224343883503025 APAPLLFKRL 10 Unmodified _APAPLLFKRL_ 0 0 0 ENST00000216780.8_1_14:24563387-24566117:+|nuORF ENST00000216780.8_1_14:24563387-24566117:+|nuORF ENST00000216780.8_1_14:24563387-24566117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 563.3611450195312 2 563.360776 1124.707 NaN NaN NaN NaN NaN NaN NaN 146.77 1 146.77 146.27 147.27 0 0 0 0 0.22569 1 29356 29356 15.847 4.2069 1 3630 8120 2061 2064 4019 4019 0.14963464916036173 APAPLLFKRL 10 Unmodified _APAPLLFKRL_ 0 0 0 ENST00000216780.8_1_14:24563387-24566117:+|nuORF ENST00000216780.8_1_14:24563387-24566117:+|nuORF ENST00000216780.8_1_14:24563387-24566117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 563.3480224609375 2 563.360776 1124.707 NaN NaN NaN NaN NaN NaN NaN 145.05 1 140.1 139.6 140.6 -4.9445 0 0 0 0.22588 1 28034 28034 10.824 4.1008 1 3631 8120 2061 2064 4020 4020 0.14963464916036173 APAPMSHTRRR 11 Unmodified _APAPMSHTRRR_ 0 0 0 SCNM1|p.P184H|1|0.15|ENSG00000163156|chr1:151168296-151168296|C/A|missense_variant SCNM1|p.P184H|1|0.15|ENSG00000163156|chr1:151168296-151168296|C/A|missense_variant SCNM1|p.P184H|1|0.15|ENSG00000163156|chr1:151168296-151168296|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 640.1759643554688 2 640.343655 1278.67276 0.42908 0.00027476 -3.5585 -0.0022787 -3.1294 -0.0020039 640.8413143463748 167.35 0.17146 162.4 162.33 162.5 -4.948 5 4 2 0 0 0 0.94712 1 32923 32923 3.2813 0.28607 1 12449000 3632 25646 2062 2065 4021 4021 0.0445669348548563 APAPPEMPKQ 10 Unmodified _APAPPEMPKQ_ 0 0 0 REV__TRERF1|p.F853Rfs*6|2|0.34|ENSG00000124496|chr6:42256748-42256751|CAAA/-|frameshift_variant REV__TRERF1|p.F853Rfs*6|2|0.34|ENSG00000124496|chr6:42256748-42256751|CAAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2734375 2 533.273509 1064.53247 NaN NaN NaN NaN NaN NaN NaN 173.97 1 169.08 168.58 169.58 -4.8916 0 0 0 0.22588 1 34611 34611 7.9102 0 1 + 3633 15780 2063 2066 4022 4022 0.00278096708530029 APAPPPFIP 9 Unmodified _APAPPPFIP_ 0 0 0 ENST00000467160.1_1_19:19758004-19758388:-|nuORF ENST00000467160.1_1_19:19758004-19758388:-|nuORF ENST00000467160.1_1_19:19758004-19758388:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75921630859375 2 453.757821 905.501089 NaN NaN NaN NaN NaN NaN NaN 164.42 1 164.42 163.92 164.92 0 0 0 0 0.1902 1 33247 33247 0.87518 0 1 3634 10145 2064 2067 4023 4023 0.04455891736745343 APAPPPGSG 9 Unmodified _APAPPPGSG_ 0 0 0 REV__ENST00000591648.1_1_18:34398841-34408940:-|nuORF REV__ENST00000591648.1_1_18:34398841-34408940:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 752.3848876953125 1 750.37808 749.370804 0.40768 0.00030592 -0.20477 -0.00015366 0.20291 0.00015226 750.3777929864348 54.121 2.2034 51.237 50.872 53.076 -2.8837 143 63 3 0 0 0 0.59384 1 10405 10405 13.508 4.9146 1 28481000 + 3635 23342 2065 2068 4024 4024 -0.013907042622236077 APAPPPGSG 9 Unmodified _APAPPPGSG_ 0 0 0 REV__ENST00000591648.1_1_18:34398841-34408940:-|nuORF REV__ENST00000591648.1_1_18:34398841-34408940:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 750.37808 749.370804 0.55455 0.00041613 -0.40085 -0.00030079 0.15371 0.00011534 750.3776728560686 51.413 2.0168 51.413 51.058 53.075 0 0.18103 -0.00018171 NaN 13.508 121 56 3 NaN NaN NaN NaN 0 NaN NaN 0 19710000 + 3636 23342 2065 2068 -0.013907042622236077 APAPPPGSG 9 Unmodified _APAPPPGSG_ 0 0 0 REV__ENST00000591648.1_1_18:34398841-34408940:-|nuORF REV__ENST00000591648.1_1_18:34398841-34408940:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 750.37808 749.370804 0.29558 0.0002218 -0.15144 -0.00011364 0.14414 0.00010816 750.3778998363539 54.235 2.3426 51.099 50.835 53.178 -3.1352 -0.13302 5.446E-06 NaN 13.508 125 66 2 NaN NaN NaN NaN 0 NaN NaN 0 25087000 + 3637 23342 2065 2068 -0.013907042622236077 APAPPRALNQP 11 Unmodified _APAPPRALNQP_ 0 0 0 REV__ENST00000566637.5_1_16:88776385-88780917:+|nuORF REV__ENST00000566637.5_1_16:88776385-88780917:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 566.1105346679688 2 566.317097 1130.61964 0.28251 0.00015999 0.68917 0.00039029 0.97168 0.00055028 566.316868498328 140.7 0.14015 140.7 140.61 140.75 0 5 3 2 0 0 0 0.91024 1 28003 28003 1.3295 0 1 4142000 + 3638 18397 2066 2069 4025 4025 0.05955638974455724 APAPRQALSQL 11 Unmodified _APAPRQALSQL_ 0 0 0 REV__ENSG00000151461|ENST00000357604|UPF2 REV__ENSG00000151461|ENST00000357604|UPF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.32421875 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 118.52 1 114.11 113.61 114.61 -4.4088 0 0 0 0.22683 1 22805 22805 10.8 0.64894 1 + 3639 17067 2067 2070 4026 4026 0.0765590814596635 APAPRRNELR 10 Unmodified _APAPRRNELR_ 0 0 0 ENST00000489343.5_1_3:132440828-132441221:+|nuORF ENST00000489343.5_1_3:132440828-132441221:+|nuORF ENST00000489343.5_1_3:132440828-132441221:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2708129882812 2 590.338895 1178.66324 NaN NaN NaN NaN NaN NaN NaN 160.92 1 160.92 160.42 161.42 0 0 0 0 0.22588 1 32312 32312 11.64 1.5664 1 3640 10497 2068 2071 4027 4027 0.08105248471611048 APAPRRQRPC 10 Unmodified _APAPRRQRPC_ 0 0 0 REV__ENST00000243077.7_1_12:57574975-57577167:+|nuORF REV__ENST00000243077.7_1_12:57574975-57577167:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3162231445312 2 576.314366 1150.61418 NaN NaN NaN NaN NaN NaN NaN 172.34 1 167.46 166.96 167.96 -4.881 0 0 0 0.22588 1 34202 34202 10.824 0.75 1 + 3641 20092 2069 2072 4028 4028 0.04489636911034722 APAPSLPLSPR 11 Unmodified _APAPSLPLSPR_ 0 0 0 ENST00000592120.5_2_16:4896808-4897351:+|nuORF ENST00000592120.5_2_16:4896808-4897351:+|nuORF ENST00000592120.5_2_16:4896808-4897351:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 553.6199340820312 2 553.321848 1104.62914 NaN NaN NaN NaN NaN NaN NaN 166.07 1 166.07 165.57 166.57 0 0 0 0 0.22775 1 33784 33784 10.074 2.7847 1 3642 11633 2070 2073 4029 4029 0.08101407260005544 APAPSLPLSPR 11 Unmodified _APAPSLPLSPR_ 0 0 0 ENST00000592120.5_2_16:4896808-4897351:+|nuORF ENST00000592120.5_2_16:4896808-4897351:+|nuORF ENST00000592120.5_2_16:4896808-4897351:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 553.3611450195312 2 553.321848 1104.62914 NaN NaN NaN NaN NaN NaN NaN 165.17 1 160.19 159.69 160.69 -4.9811 0 0 0 0.224 1 32262 32262 13.042 2.2185 1 3643 11633 2070 2073 4030 4030 0.08101407260005544 APAPVPTQRQS 11 Unmodified _APAPVPTQRQS_ 0 0 0 REV__ENST00000527357.5_1_11:803787-804093:-|nuORF REV__ENST00000527357.5_1_11:803787-804093:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3111572265625 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 169.8 1 165.01 164.51 165.51 -4.7898 0 0 0 0.22862 1 34414 34414 9.3831 0.63772 1 + 3644 22705 2071 2074 4031 4031 0.04019031249231375 APAPYLGNKL 10 Unmodified _APAPYLGNKL_ 0 0 0 LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2;LAMA2|p.V2281Cfs*12|1|0.36|ENSG00000196569|chr6:129456464-129456465|-/T|frameshift_variant;LAMA2|p.A2665Cfs*4|1|0.15|ENSG00000196569|chr6:129491988-129491989|-/G|frameshift_variant;LAMA2|p.N1765Mfs*26|1|0.4|ENSG00000196569|chr6:129393101-129393101|A/-|frameshift_variant;LAMA2|p.K1124Nfs*15|2|0.34|ENSG00000196569|chr6:129313053-129313053|A/-|frameshift_variant;LAMA2|p.K682Efs*22|1|0.32|ENSG00000196569|chr6:129252243-129252244|AA/-|frameshift_variant LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2576904296875 2 522.297842 1042.58113 NaN NaN NaN NaN NaN NaN NaN 170.68 1 165.76 165.26 166.26 -4.9149 0 0 0 0.22588 1 33756 33756 7.9102 0.62092 1 3645 7283 2072 2075 4032 4032 0.061543333399413314 APAQLFEW 8 Unmodified _APAQLFEW_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2440185546875 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 101.71 1 101.71 101.21 102.21 0 0 0 0 0.22684 1 19968 19968 1.4551 1.4113 1 + 3646 16401 2073 2076 4033 4033 -0.011298866482889025 APAQLFEW 8 Unmodified _APAQLFEW_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2433166503906 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 175.37 1 175.37 174.87 175.87 0 0 0 0 0.21486 1 36333 36333 2.3027 0.24298 1 + 3647 16401 2073 2076 4034 4034 -0.011298866482889025 APAQLFEW 8 Unmodified _APAQLFEW_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24310302734375 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 171.32 1 166.53 166.03 167.03 -4.7898 0 0 0 0.21323 1 34828 34828 14.582 5.2343 1 + 3648 16401 2073 2076 4035 4035 -0.011298866482889025 APAQLFEW 8 Unmodified _APAQLFEW_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24237060546875 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 21.278 1 19.893 19.393 20.393 -1.3847 0 0 0 0.23811 1 3342 3342 0.62683 0 1 + 3649 16401 2073 2076 4036 4036 -0.011298866482889025 APAQLFEW 8 Unmodified _APAQLFEW_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24066162109375 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 171.88 1 166.97 166.47 167.47 -4.9149 0 0 0 0.22684 1 34067 34067 0.68139 0.60813 1 + 3650 16401 2073 2076 4037 4037 -0.011298866482889025 APAQLFEW 8 Unmodified _APAQLFEW_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24066162109375 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 171.89 1 166.98 166.48 167.48 -4.9149 0 0 0 0.21486 1 34071 34071 9.3474 4.5914 1 + 3651 16401 2073 2076 4038 4038 -0.011298866482889025 APAQLFEW 8 Unmodified _APAQLFEW_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24114990234375 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 176.47 1 171.59 171.09 172.09 -4.8739 0 0 0 0.23782 1 35104 35104 0.12286 0.049601 1 + 3652 16401 2073 2076 4039 4039 -0.011298866482889025 APAQLGLYE 9 Unmodified _APAQLGLYE_ 0 0 0 REV__ENST00000486927.1_1_2:38585669-38586665:-|nuORF REV__ENST00000486927.1_1_2:38585669-38586665:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2516174316406 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 173.69 1 173.69 173.19 174.19 0 0 0 0 0.23508 1 35929 35929 12.532 0.89125 1 + 3653 22245 2074 2077 4040 4040 0.00982078660570096 APAQLGLYE 9 Unmodified _APAQLGLYE_ 0 0 0 REV__ENST00000486927.1_1_2:38585669-38586665:-|nuORF REV__ENST00000486927.1_1_2:38585669-38586665:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2513427734375 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 163.63 1 158.58 158.08 159.08 -5.0446 0 0 0 0.22621 1 31855 31855 15.847 4.2069 1 + 3654 22245 2074 2077 4041 4041 0.00982078660570096 APAQLGLYE 9 Unmodified _APAQLGLYE_ 0 0 0 REV__ENST00000486927.1_1_2:38585669-38586665:-|nuORF REV__ENST00000486927.1_1_2:38585669-38586665:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.255126953125 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 171.18 1 166.31 165.81 166.81 -4.873 0 0 0 0.23508 1 33915 33915 7.9102 0.62092 1 + 3655 22245 2074 2077 4042 4042 0.00982078660570096 APAQRPLLPLL 11 Unmodified _APAQRPLLPLL_ 0 0 0 ENSG00000099617|ENST00000215368|EFNA2 ENSG00000099617|ENST00000215368|EFNA2 ENSG00000099617|ENST00000215368|EFNA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 594.8771362304688 2 594.876791 1187.73903 NaN NaN NaN NaN NaN NaN NaN 170.38 1 165.47 164.97 165.97 -4.9149 0 0 0 0.23634 1 33687 33687 3.2813 0.78282 1 3656 1895 2075 2078 4043 4043 0.15266832599195368 APAQSQFLPQ 10 Unmodified _APAQSQFLPQ_ 0 0 0 CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7810668945312 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 174.27 1 169.48 168.98 169.98 -4.7898 0 0 0 0.22588 1 35594 35594 11.64 0.81637 1 3657 724 2076 2079 4044 4044 0.01120554954900399 APAQWRAESY 10 Unmodified _APAQWRAESY_ 0 0 0 nc|ENSG00000188833|Q5MY95-2|ENTPD8;ENSG00000188833|ENST00000371506|ENTPD8 nc|ENSG00000188833|Q5MY95-2|ENTPD8 nc|ENSG00000188833|Q5MY95-2|ENTPD8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2516479492188 2 589.783087 1177.55162 0.50674 0.00029887 -0.64168 -0.00037845 -0.13495 -7.9589E-05 590.2852486536265 76.247 0.20293 72.524 72.38 72.583 -3.7227 7 5 2 0 0 0 0.8888 1 14434 14434 7.2892 0 1 1181700 3658 7202 2077 2080 4045 4045 -0.030052306761945147 APARKSMRTW 10 Unmodified _APARKSMRTW_ 0 0 0 ENST00000551271.5_1_14:105884588-105885396:-|nuORF ENST00000551271.5_1_14:105884588-105885396:-|nuORF ENST00000551271.5_1_14:105884588-105885396:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2797241210938 2 602.324399 1202.63425 0.32609 0.00019641 0.81669 0.00049191 1.1428 0.00068832 602.3228951113358 138.37 0.20859 133.53 133.37 133.58 -4.84 7 5 2 0 0 0 0.744 1 26670 26670 6.7232 2.1943 1 703190 3659 11185 2078 2081 4046 4046 0.04103387850955187 APARLLLPLL 10 Unmodified _APARLLLPLL_ 0 0 0 nc|ENSG00000020181|Q96PE1-3|ADGRA2;ADGRA2|p.A525Pfs*12|4|0.24|ENSG00000020181|chr8:37834087-37834087|G/-|frameshift_variant;ADGRA2|p.V678Sfs*14|1|0.36|ENSG00000020181|chr8:37835747-37835747|C/-|frameshift_variant;ADGRA2|p.L985Pfs*2|1|0.18|ENSG00000020181|chr8:37841292-37841292|T/-|frameshift_variant;nc|ENSG00000020181|Q96PE1-2|ADGRA2;ENSG00000020181|ENST00000412232|ADGRA2 nc|ENSG00000020181|Q96PE1-3|ADGRA2 nc|ENSG00000020181|Q96PE1-3|ADGRA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 539.1619262695312 2 538.863152 1075.71175 NaN NaN NaN NaN NaN NaN NaN 174.41 1 169.62 169.12 170.12 -4.7898 0 0 0 0.22588 1 35631 35631 4.3292 0 1 3660 73 2079 2082 4047 4047 0.17692349058802392 APARNTLRF 9 Unmodified _APARNTLRF_ 0 0 0 REV__ENST00000337318.7_2_10:126370828-126370945:-|nuORF REV__ENST00000337318.7_2_10:126370828-126370945:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6786499023438 2 523.298707 1044.58286 -0.11737 -6.1418E-05 -2.0723 -0.0010844 -2.1897 -0.0011459 523.2985349338446 145.53 0.28239 140.86 140.72 141 -4.6694 9 7 2 0 0 0 0.77732 1 28848 28848 7.9102 0 1 9151300 + 3661 20674 2080 2083 4048 4048 0.06235387148558402 APARPPRSPP 10 Unmodified _APARPPRSPP_ 0 0 0 GP1BA|p.S420Afs*52|1|0.4|ENSG00000185245|chr17:4933857-4933857|C/-|frameshift_variant GP1BA|p.S420Afs*52|1|0.4|ENSG00000185245|chr17:4933857-4933857|C/-|frameshift_variant GP1BA|p.S420Afs*52|1|0.4|ENSG00000185245|chr17:4933857-4933857|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.700927734375 2 523.298707 1044.58286 -0.90055 -0.00047125 1.0374 0.00054286 0.13683 7.1602E-05 523.2992190574593 19.553 0.66051 18.228 18.037 18.698 -1.3251 30 18 3 0 0 0 0.91149 1 3058 3058 3.9444 1.8846 1 7274500 3662 11857 2081 2084 4049 4049 0.06235387148558402 APARTIYLNQP 11 Unmodified _APARTIYLNQP_ 0 0 0 ATP8A2|p.S260Kfs*8|1|0.35|ENSG00000132932|chr13:25542041-25542042|-/A|frameshift_variant;nc|ENSG00000132932|Q9NTI2-3|ATP8A2;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2 ATP8A2|p.S260Kfs*8|1|0.35|ENSG00000132932|chr13:25542041-25542042|-/A|frameshift_variant ATP8A2|p.S260Kfs*8|1|0.35|ENSG00000132932|chr13:25542041-25542042|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7517700195312 2 622.343312 1242.67207 0.39935 0.00024853 2.0203 0.0012573 2.4196 0.0015058 622.344492256287 136.53 0.10197 136.53 136.45 136.55 0 4 2 2 0 0 0 0.91954 1 27046 27046 2.9952 0 1 3173800 3663 276 2082 2085 4050 4050 0.0604417731740341 APARYVVAVGS 11 Unmodified _APARYVVAVGS_ 0 0 0 ENSG00000165349|ENST00000374299|SLC7A3 ENSG00000165349|ENST00000374299|SLC7A3 ENSG00000165349|ENST00000374299|SLC7A3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 545.2946166992188 2 545.306198 1088.59784 NaN NaN NaN NaN NaN NaN NaN 169.49 1 169.49 168.99 169.99 0 0 0 0 0.22862 1 34792 34792 9.3831 0 1 3664 5621 2083 2086 4051 4051 0.057088342259021374 APASCYILKGE 11 Unmodified _APASCYILKGE_ 0 0 0 ENST00000596510.5_1_19:48556252-48575644:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C ENST00000596510.5_1_19:48556252-48575644:-|nuORF ENST00000596510.5_1_19:48556252-48575644:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3314819335938 2 576.291899 1150.56925 NaN NaN NaN NaN NaN NaN NaN 141.13 1 141.13 140.63 141.63 0 0 0 0 0.20277 1 28113 28113 18.146 7.3224 1 3665 2314 2084 2087 4052 4052 -1.651465527174878E-05 APASLSGGPEA 11 Unmodified _APASLSGGPEA_ 0 0 0 REV__ENST00000563588.5_1_16:30768252-30768357:+|nuORF REV__ENST00000563588.5_1_16:30768252-30768357:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7376403808594 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 162.92 1 157.77 157.27 158.27 -5.1438 0 0 0 0.22632 1 31675 31675 0.2986 0 1 + 3666 23081 2085 2088 4053 4053 -0.018436997244634767 APASPRRPQ 9 Unmodified _APASPRRPQ_ 0 0 0 nc|ENSG00000152467|Q8NBB4-2|ZSCAN1;ZSCAN1|p.Q181Sfs*29|1|0.16|ENSG00000152467|chr19:58052563-58052563|C/-|frameshift_variant;ENSG00000152467|ENST00000282326|ZSCAN1 nc|ENSG00000152467|Q8NBB4-2|ZSCAN1 nc|ENSG00000152467|Q8NBB4-2|ZSCAN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27606201171875 2 490.275232 978.535912 NaN NaN NaN NaN NaN NaN NaN 171.57 1 166.7 166.2 167.2 -4.873 0 0 0 0.22251 1 34010 34010 16.942 0 1 3667 4924 2086 2089 4054 4054 0.045785275974253636 APASSLLPNSS 11 Unmodified _APASSLLPNSS_ 0 0 0 ENST00000579186.1_1_17:30368040-30368955:+|nuORF ENST00000579186.1_1_17:30368040-30368955:+|nuORF ENST00000579186.1_1_17:30368040-30368955:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2722778320312 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 170.88 1 166.01 165.51 166.51 -4.873 0 0 0 0.23324 1 33838 33838 5.7319 0.50118 1 3668 11480 2087 2090 4055 4055 0.009925448553985916 APASSSCA 8 Unmodified _APASSSCA_ 0 0 0 ENST00000446662.5_1_16:22448395-22448719:+|nuORF ENST00000446662.5_1_16:22448395-22448719:+|nuORF ENST00000446662.5_1_16:22448395-22448719:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.20379638671875 2 347.147246 692.27994 NaN NaN NaN NaN NaN NaN NaN 73.949 1 70.584 70.084 71.084 -3.3643 0 0 0 0.21486 1 14421 14421 2.8892 0 1 3669 9944 2088 2091 4056 4056 -0.07850916302015776 APASTRLFQVR 11 Unmodified _APASTRLFQVR_ 0 0 0 ENST00000373807.5_1_9:124074589-124093809:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;CON__Q3SX14;nc|ENSG00000148180|P06396|GSN ENST00000373807.5_1_9:124074589-124093809:+|nuORF ENST00000373807.5_1_9:124074589-124093809:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.77978515625 2 623.356754 1244.69895 1.0019 0.00062452 -1.2561 -0.00078297 -0.25419 -0.00015845 623.3568597852264 139.62 0.21191 134.98 134.82 135.03 -4.6439 10 5 3 0 0 0 0.95894 1 27550 27550 5.2969 3.815 1 1252100 + 3670 694 2089 2092 4057 4057 0.08639285928597928 APASVDWQKRC 11 Unmodified _APASVDWQKRC_ 0 0 0 ENSG00000054690|ENST00000329153|PLEKHH1;PLEKHH1|p.P545Rfs*42|1|0.62|ENSG00000054690|chr14:67572178-67572178|C/-|frameshift_variant ENSG00000054690|ENST00000329153|PLEKHH1 ENSG00000054690|ENST00000329153|PLEKHH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7582397460938 2 630.811322 1259.60809 NaN NaN NaN NaN NaN NaN NaN 164.92 1 164.92 164.42 165.42 0 0 0 0 0.23264 1 33404 33404 6.2058 0 1 3671 1267 2090 2093 4058 4058 -0.011329261111768574 APASWYYSH 9 Unmodified _APASWYYSH_ 0 0 0 REV__LAMA2|p.K682Efs*22|1|0.32|ENSG00000196569|chr6:129252243-129252244|AA/-|frameshift_variant REV__LAMA2|p.K682Efs*22|1|0.32|ENSG00000196569|chr6:129252243-129252244|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2784423828125 2 541.240524 1080.46649 NaN NaN NaN NaN NaN NaN NaN 169.41 1 164.62 164.12 165.12 -4.7898 0 0 0 0.23508 1 34316 34316 5.2307 0.47466 1 + 3672 19259 2091 2094 4059 4059 -0.07051976141997329 APATEASKPPL 11 Unmodified _APATEASKPPL_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant;TNXB|p.G2152Afs*46|1|0.18|ENSG00000168477|chr6:32067750-32067750|C/-|frameshift_variant;TNXB|p.E2633Sfs*2|1|0.06|ENSG00000168477|chr6:32056832-32056832|C/-|frameshift_variant nc|ENSG00000168477|P22105-1|TNXB nc|ENSG00000168477|P22105-1|TNXB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2623291015625 2 541.298039 1080.58152 NaN NaN NaN NaN NaN NaN NaN 106.52 1 106.52 106.02 107.02 0 0 0 0 0.15347 1 20940 20940 27.629 8.3718 1 3673 5911 2092 2095 4060 4060 0.04445708269145143 APATEASKPPL 11 Unmodified _APATEASKPPL_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant;TNXB|p.G2152Afs*46|1|0.18|ENSG00000168477|chr6:32067750-32067750|C/-|frameshift_variant;TNXB|p.E2633Sfs*2|1|0.06|ENSG00000168477|chr6:32056832-32056832|C/-|frameshift_variant nc|ENSG00000168477|P22105-1|TNXB nc|ENSG00000168477|P22105-1|TNXB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2780151367188 2 541.298039 1080.58152 NaN NaN NaN NaN NaN NaN NaN 106.69 1 106.69 106.19 107.19 0 0 0 0 0.1339 1 20976 20976 30.637 6.616 1 3674 5911 2092 2095 4061 4061 0.04445708269145143 APATEASKPPL 11 Unmodified _APATEASKPPL_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant;TNXB|p.G2152Afs*46|1|0.18|ENSG00000168477|chr6:32067750-32067750|C/-|frameshift_variant;TNXB|p.E2633Sfs*2|1|0.06|ENSG00000168477|chr6:32056832-32056832|C/-|frameshift_variant nc|ENSG00000168477|P22105-1|TNXB nc|ENSG00000168477|P22105-1|TNXB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2611083984375 2 541.298039 1080.58152 NaN NaN NaN NaN NaN NaN NaN 110.77 1 106.35 105.85 106.85 -4.4231 0 0 0 0.10942 1 21822 21822 34.402 18.253 1 3675 5911 2092 2095 4062 4062 0.04445708269145143 APATIEPSPP 10 Unmodified _APATIEPSPP_ 0 0 0 REV__ENST00000361580.6_1_1:170024568-170043729:-|nuORF REV__ENST00000361580.6_1_1:170024568-170043729:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.271728515625 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 127.07 1 122.27 121.77 122.77 -4.7958 0 0 0 0.12557 1 24392 24392 52.268 14.294 1 + 3676 20885 2093 2096 4063 4063 0.012100613149982564 APATLQGRRI 10 Unmodified _APATLQGRRI_ 0 0 0 REV__ENST00000475773.5_1_1:29520536-29527072:-|nuORF REV__ENST00000475773.5_1_1:29520536-29527072:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2835083007812 2 541.825089 1081.63563 0.31782 0.00017221 -3.6052 -0.0019534 -3.2873 -0.0017812 541.8237399232031 138.44 0.16904 138.44 138.35 138.52 0 6 4 2 0 0 0 0.89521 1 27479 27479 3.5965 0 1 5729800 + 3677 15480 2094 2097 4064 4064 0.0980734521137947 APATPLQVHAP 11 Unmodified _APATPLQVHAP_ 0 0 0 ENST00000472057.1_1_22:29727525-29736761:-|nuORF;ENST00000482818.1_1_22:29726183-29727937:-|nuORF ENST00000472057.1_1_22:29727525-29736761:-|nuORF ENST00000472057.1_1_22:29727525-29736761:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 551.216796875 2 551.306198 1100.59784 NaN NaN NaN NaN NaN NaN NaN 172.54 1 167.66 167.16 168.16 -4.881 0 0 0 0.224 1 34256 34256 13.042 2.2185 1 3678 10219 2095 2098 4065 4065 0.051568342258860866 APATQQQWQF 10 Unmodified _APATQQQWQF_ 0 0 0 ENST00000264192.7_1_2:158300458-158300560:-|nuORF ENST00000264192.7_1_2:158300458-158300560:-|nuORF ENST00000264192.7_1_2:158300458-158300560:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.8086547851562 2 602.790912 1203.56727 NaN NaN NaN NaN NaN NaN NaN 171.67 1 171.67 171.17 172.17 0 0 0 0 0.22588 1 35385 35385 7.2892 0.18751 1 3679 8335 2096 2099 4066 4066 -0.026369441591668874 APAVDTEEFTT 11 Unmodified _APAVDTEEFTT_ 0 0 0 GPR179|p.A1937V|1|0.46|ENSG00000277399|chr17:38327759-38327759|G/A|missense_variant GPR179|p.A1937V|1|0.46|ENSG00000277399|chr17:38327759-38327759|G/A|missense_variant GPR179|p.A1937V|1|0.46|ENSG00000277399|chr17:38327759-38327759|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2601928710938 2 590.772051 1179.52955 0.35182 0.00020785 -2.6996 -0.0015949 -2.3478 -0.001387 591.2726594842546 142.21 0.14069 142.21 142.12 142.27 0 6 3 2 0 0 0 0.96063 1 28355 28355 3.5965 0 1 2629600 3680 11859 2097 2100 4067 4067 -0.053034999352803425 APAVEAEGPG 10 Unmodified _APAVEAEGPG_ 0 0 0 TXLNA|p.G94Afs*35|1|0.2|ENSG00000084652|chr1:32181348-32181348|G/-|frameshift_variant;ENSG00000084652|ENST00000373610|TXLNA TXLNA|p.G94Afs*35|1|0.2|ENSG00000084652|chr1:32181348-32181348|G/-|frameshift_variant TXLNA|p.G94Afs*35|1|0.2|ENSG00000084652|chr1:32181348-32181348|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.3580627441406 2 449.219257 896.423961 NaN NaN NaN NaN NaN NaN NaN 31.111 1 28.995 28.495 29.495 -2.1167 0 0 0 0.22588 1 5638 5638 4.3292 1.44 1 3681 1668 2098 2101 4068 4068 -0.028393712702268203 APAVFPDQERM 11 Unmodified _APAVFPDQERM_ 0 0 0 ENSG00000047578|ENST00000261588|KATNIP ENSG00000047578|ENST00000261588|KATNIP ENSG00000047578|ENST00000261588|KATNIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7520141601562 2 630.805705 1259.59686 NaN NaN NaN NaN NaN NaN NaN 161.74 1 156.95 156.45 157.45 -4.7898 0 0 0 0.23264 1 32168 32168 6.2058 0 1 3682 1216 2099 2102 4069 4069 -0.022557482053116473 APAVFVKCHD 10 Unmodified _APAVFVKCHD_ 0 0 0 ENSG00000175445|ENST00000650287|LPL ENSG00000175445|ENST00000650287|LPL ENSG00000175445|ENST00000650287|LPL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7760009765625 2 543.773677 1085.5328 NaN NaN NaN NaN NaN NaN NaN 164.98 1 160.19 159.69 160.69 -4.7898 0 0 0 0.22588 1 33007 33007 11.64 3.047 1 3683 6410 2100 2103 4070 4070 -0.006544835715885711 APAVFVKCHD 10 Unmodified _APAVFVKCHD_ 0 0 0 ENSG00000175445|ENST00000650287|LPL ENSG00000175445|ENST00000650287|LPL ENSG00000175445|ENST00000650287|LPL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7957763671875 2 543.773677 1085.5328 NaN NaN NaN NaN NaN NaN NaN 172.78 1 167.99 167.49 168.49 -4.7898 0 0 0 0.22588 1 35213 35213 11.64 2.2572 1 3684 6410 2100 2103 4071 4071 -0.006544835715885711 APAVGPEWAHP 11 Unmodified _APAVGPEWAHP_ 0 0 0 REV__ZXDA|p.A195V|1|0.42|ENSG00000198205|chrX:57909837-57909837|G/A|missense_variant REV__ZXDA|p.A195V|1|0.42|ENSG00000198205|chrX:57909837-57909837|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 566.2509155273438 2 566.282723 1130.55089 NaN NaN NaN NaN NaN NaN NaN 164.02 1 164.02 163.52 164.52 0 0 0 0 0.2268 1 33119 33119 10.824 2.9138 1 + 3685 25602 2101 2104 4072 4072 -0.0091602532527304 APAVPARQP 9 Unmodified _APAVPARQP_ 0 0 0 ENST00000531066.5_1_11:16834711-16838638:-|nuORF ENST00000531066.5_1_11:16834711-16838638:-|nuORF ENST00000531066.5_1_11:16834711-16838638:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.761474609375 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 164.82 1 160.03 159.53 160.53 -4.7898 0 0 0 0.21408 1 32964 32964 19.439 1.304 1 3686 10963 2102 2105 4073 4073 0.05176624337184421 APAVQIILRI 10 Unmodified _APAVQIILRI_ 0 0 0 ENSG00000188800|ENST00000372766|TMCO2 ENSG00000188800|ENST00000372766|TMCO2 ENSG00000188800|ENST00000372766|TMCO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7904052734375 2 547.358234 1092.70191 0.23669 0.00012955 -3.116 -0.0017056 -2.8793 -0.001576 547.3553432888667 140.87 0.17532 136.22 136.12 136.3 -4.6493 7 4 2 0 0 0 0.91149 1 27827 27827 1.8442 1.3859 1 851080 3687 7195 2103 2106 4074 4074 0.15927161053423333 APAVQLPQQLS 11 Unmodified _APAVQLPQQLS_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3200073242188 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 137.67 1 137.67 137.17 138.17 0 0 0 0 0.22943 1 27309 27309 8.7454 0 1 3688 1325 2104 2107 4075 4075 0.06533086051808823 APAVRAAPGVW 11 Unmodified _APAVRAAPGVW_ 0 0 0 REV__ENST00000290759.8_1_15:76630616-76633527:+|nuORF REV__ENST00000290759.8_1_15:76630616-76633527:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7908935546875 2 547.808908 1093.60326 NaN NaN NaN NaN NaN NaN NaN 165.89 1 160.91 160.41 161.41 -4.9811 0 0 0 0.21257 1 32465 32465 15.847 5.0233 1 + 3689 20352 2105 2108 4076 4076 0.06020557808369631 APAVRRRRL 9 Unmodified _APAVRRRRL_ 0 0 0 ENST00000409965.5_1_2:170681113-170681377:-|nuORF ENST00000409965.5_1_2:170681113-170681377:-|nuORF ENST00000409965.5_1_2:170681113-170681377:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7907104492188 2 547.854516 1093.69448 NaN NaN NaN NaN NaN NaN NaN 147.95 1 147.95 147.45 148.45 0 0 0 0 0.23508 1 29600 29600 8.5933 3.8373 1 3690 9574 2106 2109 4077 4077 0.15137866296367974 APAVTHPG 8 Unmodified _APAVTHPG_ 0 0 0 ENST00000527512.5_1_8:146171322-146176236:-|nuORF;ENST00000529378.1_1_8:146171322-146173480:-|nuORF;ZNF16|p.Y472Qfs*111|1|0.19|ENSG00000170631|chr8:144931377-144931378|-/AAGTCTGGTGCTTCCTCAGGTGTGCACTCTGGCTG|frameshift_variant;ENSG00000170631|ENST00000394909|ZNF16 ENST00000527512.5_1_8:146171322-146176236:-|nuORF ENST00000527512.5_1_8:146171322-146176236:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2203063964844 2 375.20067 748.386788 NaN NaN NaN NaN NaN NaN NaN 66.352 1 63.025 62.525 63.525 -3.3268 0 0 0 0.21486 1 12489 12489 6.3541 0.59368 1 3691 6088 2107 2110 4078 4078 0.002530019746814105 APAWLLLL 8 Unmodified _APAWLLLL_ 0 0 0 REV__nc|ENSG00000148204|Q5IJ48-2|CRB2 REV__nc|ENSG00000148204|Q5IJ48-2|CRB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.2466735839844 2 448.783839 895.553125 -0.18616 -8.3544E-05 0.44307 0.00019884 0.25691 0.0001153 448.78394807352174 44.93 0.56429 42.182 41.917 42.481 -2.7475 38 15 3 0 0 0 0.89646 1 8118 8118 0.063987 0.055711 1 5271200 + 3692 16964 2108 2111 4079 4079 0.1011705515053336 APAWLLLL 8 Unmodified _APAWLLLL_ 0 0 0 REV__nc|ENSG00000148204|Q5IJ48-2|CRB2 REV__nc|ENSG00000148204|Q5IJ48-2|CRB2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 448.783839 895.553125 -0.12886 -5.7832E-05 0.22925 0.00010289 0.10039 4.5053E-05 448.78388571561084 44.972 0.57257 42.182 41.847 42.42 -2.79 0.033149 -6.8531E-05 NaN 0.063987 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 8522100 + 3693 16964 2108 2111 0.1011705515053336 APCCFGDYS 9 Unmodified _APCCFGDYS_ 0 0 0 L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|114|2|anti-sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|114|2|anti-sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|114|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.765380859375 2 481.672771 961.330989 NaN NaN NaN NaN NaN NaN NaN 142.76 1 138.11 137.61 138.61 -4.656 0 0 0 0.21848 1 28219 28219 18.135 2.3668 1 3694 12062 2109 2112 4080 4080 -0.15122335319483682 APCEEDEDED 10 Unmodified _APCEEDEDED_ 0 0 0 REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3212890625 2 576.187691 1150.36083 NaN NaN NaN NaN NaN NaN NaN 164.97 1 159.98 159.48 160.48 -4.9811 0 0 0 2.8426 1 32213 32213 0.0013812 0 1 + 3695 14899 2110 2113 4081 4081 -0.2083376963109913 APCEEDEDED 10 Unmodified _APCEEDEDED_ 0 0 0 REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3212890625 2 576.187691 1150.36083 NaN NaN NaN NaN NaN NaN NaN 164.97 1 159.99 159.49 160.49 -4.9811 0 0 0 0.22588 1 32214 32214 1.8442 1.1539 1 + 3696 14899 2110 2113 4082 4082 -0.2083376963109913 APCEEDEDED 10 Unmodified _APCEEDEDED_ 0 0 0 REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3113403320312 2 576.187691 1150.36083 NaN NaN NaN NaN NaN NaN NaN 171.83 1 166.96 166.46 167.46 -4.873 0 0 0 0.22588 1 34067 34067 1.8442 0.19162 1 + 3697 14899 2110 2113 4083 4083 -0.2083376963109913 APDCWDQADM 10 Unmodified _APDCWDQADM_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3147583007812 2 576.210249 1150.40594 NaN NaN NaN NaN NaN NaN NaN 170.47 1 165.6 165.1 166.1 -4.873 0 0 0 0.22588 1 33737 33737 3.9444 0.94915 1 3698 2183 2111 2114 4084 4084 -0.1632419757891057 APDCWDQADM 10 Unmodified _APDCWDQADM_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3343505859375 2 576.210249 1150.40594 NaN NaN NaN NaN NaN NaN NaN 170.54 1 165.66 165.16 166.16 -4.873 0 0 0 0.22588 1 33753 33753 3.9444 0.94915 1 3699 2183 2111 2114 4085 4085 -0.1632419757891057 APDESGDSSV 10 Unmodified _APDESGDSSV_ 0 0 0 REV__ENSG00000064309|ENST00000531738|CDON REV__ENSG00000064309|ENST00000531738|CDON MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77239990234375 2 482.198719 962.382884 0.29293 0.00014125 -1.2655 -0.00061021 -0.97255 -0.00046896 482.19833113712787 66.059 0.38067 62.601 62.385 62.765 -3.4581 14 10 2 0 0 0 0.70987 1 12380 12380 30.637 21.253 1 817550 + 3700 14166 2112 2115 4086 4086 -0.09981177100348759 APDHDDFC 8 Unmodified _APDHDDFC_ 0 0 0 REV__nc|ENSG00000099956|Q12824-2|SMARCB1 REV__nc|ENSG00000099956|Q12824-2|SMARCB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.0838623046875 3 307.113204 918.317782 NaN NaN NaN NaN NaN NaN NaN 91.85 1 91.85 91.35 92.35 0 0 0 0 0.2396 1 17957 17957 0.12286 0 1 + 3701 14651 2113 2116 4087 4087 -0.1446445010720936 APDHDDFC 8 Unmodified _APDHDDFC_ 0 0 0 REV__nc|ENSG00000099956|Q12824-2|SMARCB1 REV__nc|ENSG00000099956|Q12824-2|SMARCB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.08428955078125 3 307.113204 918.317782 NaN NaN NaN NaN NaN NaN NaN 92.418 1 92.418 91.918 92.918 0 0 0 0 0.21486 1 18069 18069 0.45834 0 1 + 3702 14651 2113 2116 4088 4088 -0.1446445010720936 APDMNISPFDP 11 Unmodified _APDMNISPFDP_ 0 0 0 REV__nc|ENSG00000141699|Q86VR2-2|RETREG3 REV__nc|ENSG00000141699|Q86VR2-2|RETREG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.273193359375 2 602.271164 1202.52777 NaN NaN NaN NaN NaN NaN NaN 108.43 1 104.02 103.52 104.52 -4.4121 0 0 0 0.23429 1 20808 20808 4.897 0.141 1 + 3703 16649 2114 2117 4089 4089 -0.06538832224873659 APEEETPLKRE 11 Unmodified _APEEETPLKRE_ 0 0 0 REV__ENSG00000147174|ENST00000373696|GCNA REV__ENSG00000147174|ENST00000373696|GCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 433.8892822265625 3 433.557741 1297.6514 -0.27345 -0.00011856 0.90312 0.00039155 0.62966 0.000273 433.5581789972976 50.319 1.403 47.312 46.74 48.143 -3.0068 117 40 5 0 0 0 0.80759 1 9406 9406 2.6312 0.72486 1 39827000 + 3704 16924 2115 2118 4090 4090 0.014475421471161098 APEEETPLKRE 11 Unmodified _APEEETPLKRE_ 0 0 0 REV__ENSG00000147174|ENST00000373696|GCNA REV__ENSG00000147174|ENST00000373696|GCNA MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 433.557741 1297.6514 0.49465 0.00021446 0.21227 9.2031E-05 0.70692 0.00030649 433.55789265037134 47.627 1.408 47.627 46.695 48.103 0 0.20555 -0.00071668 NaN 2.6312 105 39 5 NaN NaN NaN NaN 0 NaN NaN 0 41986000 + 3705 16924 2115 2118 0.014475421471161098 APEEETPLKRE 11 Unmodified _APEEETPLKRE_ 0 0 0 REV__ENSG00000147174|ENST00000373696|GCNA REV__ENSG00000147174|ENST00000373696|GCNA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 433.557741 1297.6514 -0.27228 -0.00011805 0.92688 0.00040186 0.65461 0.00028381 433.55815455651197 50.287 0.95229 47.406 46.976 47.928 -2.8811 -0.015202 0.0002128 NaN 2.6312 95 26 5 NaN NaN NaN NaN 0 NaN NaN 0 59582000 + 3706 16924 2115 2118 0.014475421471161098 APEEETPLKRE 11 Unmodified _APEEETPLKRE_ 0 0 0 REV__ENSG00000147174|ENST00000373696|GCNA REV__ENSG00000147174|ENST00000373696|GCNA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 433.557741 1297.6514 0.0011824 5.1262E-07 0.64505 0.00027967 0.64623 0.00028018 433.5580413036806 50.386 1.0236 47.34 46.958 47.981 -3.0453 -0.080934 -0.00015378 NaN 2.6312 98 29 5 NaN NaN NaN NaN 0 NaN NaN 0 52902000 + 3707 16924 2115 2118 0.014475421471161098 APEEETPLKRE 11 Unmodified _APEEETPLKRE_ 0 0 0 REV__ENSG00000147174|ENST00000373696|GCNA REV__ENSG00000147174|ENST00000373696|GCNA MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 433.557741 1297.6514 -0.27345 -0.00011856 0.90312 0.00039155 0.62966 0.000273 433.5581789972976 50.319 1.403 47.312 46.74 48.143 -3.0068 -0.10941 0.00018188 NaN 2.6312 117 40 5 NaN NaN NaN NaN 0 NaN NaN 0 39827000 + 3708 16924 2115 2118 0.014475421471161098 APEFCKALLC 10 Unmodified _APEFCKALLC_ 0 0 0 REV__COPS3|p.K156E|1|0.35|ENSG00000141030|chr17:17264957-17264957|T/C|missense_variant REV__COPS3|p.K156E|1|0.35|ENSG00000141030|chr17:17264957-17264957|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7742919921875 2 547.772288 1093.53002 NaN NaN NaN NaN NaN NaN NaN 163.92 1 163.92 163.42 164.42 0 0 0 0 2.8426 1 33085 33085 0.043787 0.037832 1 + 3709 13563 2116 2119 4091 4091 -0.013000750207766032 APEFEIKQ 8 Unmodified _APEFEIKQ_ 0 0 0 REV__ENST00000592907.5_1_17:76832148-76832445:-|nuORF REV__ENST00000592907.5_1_17:76832148-76832445:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24334716796875 2 481.2531 960.491647 -0.21289 -0.00010245 0.74467 0.00035837 0.53178 0.00025592 481.2533548549371 20.464 0.49329 19.079 18.916 19.41 -1.3847 29 13 3 0 0 0 8448 1 3175 3175 3.5871 1.8448 1 3452800 + 3710 14116 2117 2120 4092 4092 0.009820786605587273 APEMDDYVGTF 11 Unmodified _APEMDDYVGTF_ 0 0 0 ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A ENSG00000132382|ENST00000254718|MYBBP1A ENSG00000132382|ENST00000254718|MYBBP1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.77587890625 2 622.760629 1243.5067 NaN NaN NaN NaN NaN NaN NaN 72.095 1 68.784 68.284 69.284 -3.3107 0 0 0 0.23264 1 14048 14048 6.2058 1.8765 1 3711 3721 2118 2121 4093 4093 -0.10530842324419609 APEPRRWPG 9 Unmodified _APEPRRWPG_ 0 0 0 REV__ENST00000481776.5_1_X:122993690-123022469:+|nuORF REV__ENST00000481776.5_1_X:122993690-123022469:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28271484375 2 533.283057 1064.55156 NaN NaN NaN NaN NaN NaN NaN 174.72 1 169.84 169.34 170.34 -4.8845 0 0 0 0.23508 1 34719 34719 7.2892 0.56607 1 + 3712 21517 2119 2122 4094 4094 0.021868141144750552 APERDGKSP 9 Unmodified _APERDGKSP_ 0 0 0 nc|ENSG00000126822|A1L390-2|PLEKHG3;nc|ENSG00000126822|A1L390-3|PLEKHG3;ENSG00000126822|ENST00000247226|PLEKHG3 nc|ENSG00000126822|A1L390-2|PLEKHG3 nc|ENSG00000126822|A1L390-2|PLEKHG3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7440185546875 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 23.035 1 21.482 20.982 21.982 -1.5532 0 0 0 0.22193 1 3959 3959 17.113 0.1706 1 3713 3449 2120 2123 4095 4095 -0.007208776303286868 APEREWIR 8 Unmodified _APEREWIR_ 0 0 0 REV__ENST00000464381.5_1_17:15935612-15961439:-|nuORF REV__ENST00000464381.5_1_17:15935612-15961439:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.2414855957031 3 352.857686 1055.55123 -0.17872 -6.3062E-05 0.53351 0.00018825 0.35479 0.00012519 352.8577187318692 31.161 0.41769 29.012 28.813 29.231 -2.1483 24 11 3 0 0 0 1.0265 1 5326 5326 3.9444 0 1 712720 + 3714 16610 2121 2124 4096 4096 0.025673943945776045 APEREWIR 8 Unmodified _APEREWIR_ 0 0 0 REV__ENST00000464381.5_1_17:15935612-15961439:-|nuORF REV__ENST00000464381.5_1_17:15935612-15961439:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 352.857686 1055.55123 0.064831 2.2876E-05 0.012164 4.2923E-06 0.076995 2.7168E-05 352.85758449160477 31.277 0.45108 29.161 28.93 29.381 -2.1167 0.068201 4.0828E-05 NaN 3.9444 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 979860 + 3715 16610 2121 2124 0.025673943945776045 APEREWIR 8 Unmodified _APEREWIR_ 0 0 0 REV__ENST00000464381.5_1_17:15935612-15961439:-|nuORF REV__ENST00000464381.5_1_17:15935612-15961439:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 352.857686 1055.55123 0.3068 0.00010826 -0.53823 -0.00018992 -0.23142 -8.1659E-05 352.8574734224198 31.131 0.48712 29.104 28.78 29.267 -2.0264 0.011821 -0.0005418 NaN 3.9444 23 13 3 NaN NaN NaN NaN 0 NaN NaN 0 824700 + 3716 16610 2121 2124 0.025673943945776045 APEVFMQTG 9 Unmodified _APEVFMQTG_ 0 0 0 nc|ENSG00000211455|Q9Y2H1-2|STK38L;STK38L|p.F383Lfs*9|1|0.1|ENSG00000211455|chr12:27319392-27319392|T/-|frameshift_variant;STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant;ENSG00000211455|ENST00000389032|STK38L;ENSG00000112079|ENST00000229812|STK38;ENST00000536093.5_3_12:27468169-27475385:+|nuORF nc|ENSG00000211455|Q9Y2H1-2|STK38L nc|ENSG00000211455|Q9Y2H1-2|STK38L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2554626464844 2 490.23131 978.448068 -0.29888 -0.00014652 -1.6674 -0.00081742 -1.9663 -0.00096394 490.2303789183657 18.137 0.232 16.865 16.764 16.996 -1.2722 10 6 2 0 0 0 0.84208 1 2687 2687 7.2892 0 1 307560 3717 2668 2122 2125 4097 4097 -0.0420185410821432 APFAARAA 8 Unmodified _APFAARAA_ 0 0 0 REV__ENST00000377648.4_1_1:6681853-6681985:+|nuORF REV__ENST00000377648.4_1_1:6681853-6681985:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7168884277344 2 387.716488 773.418422 NaN NaN NaN NaN NaN NaN NaN 44.67 1 41.923 41.423 42.423 -2.7475 0 0 0 0.23711 1 8090 8090 0.25148 0 1 + 3718 21101 2123 2126 4098 4098 0.022649947285913186 APFAEPAI 8 Unmodified _APFAEPAI_ 0 0 0 REV__ENST00000398341.7_1_21:44000866-44001409:+|nuORF REV__ENST00000398341.7_1_21:44000866-44001409:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3539428710938 1 815.429781 814.422505 0.54507 0.00044447 -0.090671 -7.3936E-05 0.4544 0.00037053 815.4295190214276 125.77 0.59322 121 120.65 121.25 -4.7681 23 16 2 0 0 0 0.098504 1 24137 24137 63.394 6.8525 1 2053100 + 3719 21328 2124 2127 4099 4099 0.007870394316569218 APFAEPAI 8 Unmodified _APFAEPAI_ 0 0 0 REV__ENST00000398341.7_1_21:44000866-44001409:+|nuORF REV__ENST00000398341.7_1_21:44000866-44001409:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 815.429781 814.422505 0.54507 0.00044447 -0.090671 -7.3936E-05 0.4544 0.00037053 815.4295190214276 125.77 0.59322 121 120.65 121.25 -4.7681 0.023839 -7.6826E-05 NaN 63.394 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2053100 + 3720 21328 2124 2127 0.007870394316569218 APFECYFHY 9 Unmodified _APFECYFHY_ 0 0 0 REV__ENSG00000244623|ENST00000316368|OR2AE1 REV__ENSG00000244623|ENST00000316368|OR2AE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 588.7402954101562 2 588.744585 1175.47462 NaN NaN NaN NaN NaN NaN NaN 135.93 1 131.04 130.54 131.54 -4.8951 0 0 0 0.23508 1 26119 26119 5.2307 0.47466 1 + 3721 19813 2125 2128 4100 4100 -0.10610165216894529 APFKMQLS 8 Unmodified _APFKMQLS_ 0 0 0 REV__UBA3|p.S399F|1|0.03|ENSG00000144744|chr3:69056052-69056052|G/A|missense_variant REV__UBA3|p.S399F|1|0.03|ENSG00000144744|chr3:69056052-69056052|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5328674316406 2 461.246763 920.478974 -0.030446 -1.4043E-05 0.53473 0.00024664 0.50429 0.0002326 461.24691310094585 48.471 0.56331 45.494 45.181 45.744 -2.9772 27 15 2 0 0 0 0.93477 1 8879 8879 12.532 0 1 1407300 + 3722 25509 2126 2129 4101 4101 0.015553439966765836 APFTGPQSI 9 Unmodified _APFTGPQSI_ 0 0 0 REV__nc|ENSG00000102908|O94916-2|NFAT5 REV__nc|ENSG00000102908|O94916-2|NFAT5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2430114746094 2 459.239993 916.465432 0.58344 0.00026794 -0.58178 -0.00026718 0.0016638 7.6409E-07 459.23966478378577 46.669 1.1555 46.669 46.003 47.158 0 103 32 4 0 0 0 0.52414 2 8751 8751;8773 18.135 1.1927 1 31234000 + 3723 14853 2127 2130 4102;4103 4102 0.0038580948910293955 APGAAHQRHCR 11 Unmodified _APGAAHQRHCR_ 0 0 0 REV__ENST00000441363.1_1_6:73973136-74009049:+|nuORF REV__ENST00000441363.1_1_6:73973136-74009049:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2836303710938 2 602.299247 1202.58394 NaN NaN NaN NaN NaN NaN NaN 164.74 1 159.95 159.45 160.45 -4.7898 0 0 0 0.22775 1 32945 32945 10.074 0 1 + 3724 21712 2128 2131 4104 4104 -0.009247217541997088 APGADLPSLQP 11 Unmodified _APGADLPSLQP_ 0 0 0 ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3;ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3 ENST00000414786.6_1_22:51113069-51169737:+|nuORF ENST00000414786.6_1_22:51113069-51169737:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2838134765625 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 171.48 1 166.61 166.11 167.11 -4.873 0 0 0 0.224 1 33987 33987 13.042 1.4022 1 3725 9607 2129 2132 4105 4105 0.020531352350417365 APGAGDRRQPG 11 Unmodified _APGAGDRRQPG_ 0 0 0 ENST00000229416.10_1_6:53409297-53409843:-|nuORF ENST00000229416.10_1_6:53409297-53409843:-|nuORF ENST00000229416.10_1_6:53409297-53409843:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2802124023438 2 541.278503 1080.54245 NaN NaN NaN NaN NaN NaN NaN 173.41 1 173.41 172.91 173.91 0 0 0 0 0.22775 1 35857 35857 10.074 1.9184 1 3726 8154 2130 2133 4106 4106 0.005404207581477749 APGAGLPVPAL 11 Unmodified _APGAGLPVPAL_ 0 0 0 FANCA|p.V925Rfs*18|1|0.2|ENSG00000187741|chr16:89764895-89764896|-/G|frameshift_variant;FANCA|p.G972Afs*17|1|0.37|ENSG00000187741|chr16:89758643-89758643|C/-|frameshift_variant;nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA FANCA|p.V925Rfs*18|1|0.2|ENSG00000187741|chr16:89764895-89764896|-/G|frameshift_variant FANCA|p.V925Rfs*18|1|0.2|ENSG00000187741|chr16:89764895-89764896|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7860107421875 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 163 1 157.81 157.31 158.31 -5.1878 0 0 0 0.21257 1 31685 31685 15.847 3.3156 1 3727 7125 2131 2134 4107 4107 0.07734948311224343 APGAGRRIRP 10 Unmodified _APGAGRRIRP_ 0 0 0 ENST00000566264.1_1_16:1583702-1584173:+|nuORF ENST00000566264.1_1_16:1583702-1584173:+|nuORF ENST00000566264.1_1_16:1583702-1584173:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 525.8179321289062 2 525.817599 1049.62064 NaN NaN NaN NaN NaN NaN NaN 168.51 1 163.62 163.12 164.12 -4.8914 0 0 0 0.22588 1 33224 33224 11.64 1.5664 1 3728 11365 2132 2135 4108 4108 0.09781898134019684 APGAHKVRLVR 11 Unmodified _APGAHKVRLVR_ 0 0 0 REV__ENSG00000127220|ENST00000247706|ABHD8 REV__ENSG00000127220|ENST00000247706|ABHD8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.28515625 2 602.375281 1202.73601 0.40023 0.00024109 4.4263 0.0026663 4.8265 0.0029074 602.3795509192247 166.14 0.16655 166.14 166 166.17 0 6 4 2 0 0 0 0.94712 1 33780 33780 3.2813 0 1 12927000 + 3729 15880 2133 2136 4109 4109 0.14275002265003423 APGAKPDQPY 10 Unmodified _APGAKPDQPY_ 0 0 0 REV__ENST00000464117.1_1_1:201857869-201860971:+|nuORF REV__ENST00000464117.1_1_1:201857869-201860971:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2621459960938 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 173.79 1 173.79 173.29 174.29 0 0 0 0 0.22588 1 35952 35952 11.64 1.5664 1 + 3730 19477 2134 2137 4110 4110 -0.011194204534831442 APGAKPDQPY 10 Unmodified _APGAKPDQPY_ 0 0 0 REV__ENST00000464117.1_1_1:201857869-201860971:+|nuORF REV__ENST00000464117.1_1_1:201857869-201860971:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2599487304688 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 169.43 1 164.56 164.06 165.06 -4.873 0 0 0 0.22588 1 33461 33461 10.824 0.75 1 + 3731 19477 2134 2137 4111 4111 -0.011194204534831442 APGALPACRPE 11 Unmodified _APGALPACRPE_ 0 0 0 ENSG00000066735|ENST00000423312|KIF26A;KIF26A|p.V265Wfs*43|1|0.37|ENSG00000066735|chr14:104157805-104157805|C/-|frameshift_variant;KIF26A|p.R1269Gfs*7|1|0.38|ENSG00000066735|chr14:104176588-104176588|C/-|frameshift_variant;KIF26A|p.H156Mfs*52|1|0.36|ENSG00000066735|chr14:104152187-104152187|C/-|frameshift_variant;KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant;KIF26A|p.L1096Wfs*152|1|0.43|ENSG00000066735|chr14:104176064-104176064|G/-|frameshift_variant;KIF26A|p.G1145Afs*103|1|0.2|ENSG00000066735|chr14:104176218-104176218|G/-|frameshift_variant ENSG00000066735|ENST00000423312|KIF26A;KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.278076171875 2 541.276583 1080.53861 NaN NaN NaN NaN NaN NaN NaN 155.31 1 150.05 149.55 150.55 -5.2526 0 0 0 0.22775 1 30115 30115 10.074 0.6908 1 3732 1376;12001 2135 2138 4112 4112 0.0015661494005598797 APGALTHKAEA 11 Unmodified _APGALTHKAEA_ 0 0 0 REV__ENST00000345617.7_1_2:239974412-239974691:-|nuORF REV__ENST00000345617.7_1_2:239974412-239974691:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2860107421875 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 164.55 1 164.55 164.05 165.05 0 0 0 0 0.2268 1 33288 33288 10.824 0 1 + 3733 20750 2136 2139 4113 4113 0.031759573291765264 APGAMHGSQ 9 Unmodified _APGAMHGSQ_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;nc|ENSG00000132819|Q9H0Z9-2|RBM38 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 428.1710205078125 2 428.192519 854.370486 NaN NaN NaN NaN NaN NaN NaN 59.866 1 59.866 59.366 60.366 0 0 0 0 0.23508 1 11472 11472 7.9102 2.1497 1 3734 3765 2137 2140 4114 4114 -0.06252447253734772 APGAPDPAPG 10 Unmodified _APGAPDPAPG_ 0 0 0 ENSG00000187664|ENST00000291481|HAPLN4 ENSG00000187664|ENST00000291481|HAPLN4 ENSG00000187664|ENST00000291481|HAPLN4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2547912597656 2 425.208692 848.402832 -0.25538 -0.00010859 0.51485 0.00021892 0.25947 0.00011033 425.20884729060805 70.194 0.70546 66.945 66.58 67.285 -3.2492 43 19 3 0 0 0 0.88157 1 13647 13647 1.8442 1.8442 1 2775900 3735 7118 2138 2141 4115 4115 -0.027433365791011965 APGAQEDVQE 10 Unmodified _APGAQEDVQE_ 0 0 0 REV__ENST00000371443.5_1_9:140445786-140446769:+|nuORF REV__ENST00000371443.5_1_9:140445786-140446769:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2674560546875 2 522.235635 1042.45672 NaN NaN NaN NaN NaN NaN NaN 171.05 1 166.26 165.76 166.76 -4.7898 0 0 0 0.22588 1 34751 34751 7.9102 0 1 + 3736 21005 2139 2142 4116 4116 -0.06281208938048621 APGAQPPVI 9 Unmodified _APGAQPPVI_ 0 0 0 CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24560546875 2 425.245078 848.475603 NaN NaN NaN NaN NaN NaN NaN 165.44 1 165.44 164.94 165.94 0 0 0 0 0.21408 1 33572 33572 19.439 3.5918 1 3737 724 2140 2143 4117 4117 0.04530417214323279 APGAQRHL 8 Unmodified _APGAQRHL_ 0 0 0 ENST00000492871.5_1_1:228328930-228336395:+|nuORF;ENST00000485838.5_1_1:228327993-228336550:+|nuORF ENST00000492871.5_1_1:228328930-228336395:+|nuORF ENST00000492871.5_1_1:228328930-228336395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.237060546875 2 425.238119 848.461684 NaN NaN NaN NaN NaN NaN NaN 162.72 1 162.72 162.22 163.22 0 0 0 0 0.21323 1 32738 32738 14.582 1.0738 1 3738 10445 2141 2144 4118 4118 0.0313918450589199 APGAQRHL 8 Unmodified _APGAQRHL_ 0 0 0 ENST00000492871.5_1_1:228328930-228336395:+|nuORF;ENST00000485838.5_1_1:228327993-228336550:+|nuORF ENST00000492871.5_1_1:228328930-228336395:+|nuORF ENST00000492871.5_1_1:228328930-228336395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2387390136719 2 425.238119 848.461684 NaN NaN NaN NaN NaN NaN NaN 163.56 1 158.52 158.02 159.02 -5.0446 0 0 0 0.21486 1 31837 31837 10.183 0.83596 1 3739 10445 2141 2144 4119 4119 0.0313918450589199 APGAQRHL 8 Unmodified _APGAQRHL_ 0 0 0 ENST00000492871.5_1_1:228328930-228336395:+|nuORF;ENST00000485838.5_1_1:228327993-228336550:+|nuORF ENST00000492871.5_1_1:228328930-228336395:+|nuORF ENST00000492871.5_1_1:228328930-228336395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.23681640625 2 425.238119 848.461684 NaN NaN NaN NaN NaN NaN NaN 165.3 1 160.32 159.82 160.82 -4.9811 0 0 0 0.20568 1 32294 32294 20.871 6.2895 1 3740 10445 2141 2144 4120 4120 0.0313918450589199 APGAREFQDC 10 Unmodified _APGAREFQDC_ 0 0 0 ENST00000461393.5_1_3:58292349-58303220:+|nuORF;ENST00000498618.5_1_3:58292148-58302269:+|nuORF ENST00000461393.5_1_3:58292349-58303220:+|nuORF ENST00000461393.5_1_3:58292349-58303220:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.2850952148438 2 547.240198 1092.46584 NaN NaN NaN NaN NaN NaN NaN 165.3 1 160.32 159.82 160.82 -4.9811 0 0 0 0.22588 1 32296 32296 7.9102 0.62092 1 3741 10071 2142 2145 4121 4121 -0.07669138853361801 APGARPSRVH 10 Unmodified _APGARPSRVH_ 0 0 0 REV__ENST00000566525.5_1_16:770887-771532:+|nuORF REV__ENST00000566525.5_1_16:770887-771532:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 524.314208984375 2 524.293956 1046.57336 NaN NaN NaN NaN NaN NaN NaN 163.54 1 163.54 163.04 164.04 0 0 0 0 0.22588 1 32971 32971 7.9102 2.6795 1 + 3742 23120 2143 2146 4122 4122 0.05193618863040683 APGASDRVTMP 11 Unmodified _APGASDRVTMP_ 0 0 0 nc|ENSG00000092295|P22735-2|TGM1;ENSG00000092295|ENST00000206765|TGM1 nc|ENSG00000092295|P22735-2|TGM1 nc|ENSG00000092295|P22735-2|TGM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 551.3010864257812 2 551.271498 1100.52844 NaN NaN NaN NaN NaN NaN NaN 164.94 1 159.88 159.38 160.38 -5.0648 0 0 0 0.23199 1 32199 32199 6.7232 0 1 3743 1832 2144 2147 4123 4123 -0.01779992785191098 APGASHLSRKG 11 Unmodified _APGASHLSRKG_ 0 0 0 REV__ENST00000426395.7_1_19:50017307-50017501:+|nuORF REV__ENST00000426395.7_1_19:50017307-50017501:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.266357421875 2 540.799072 1079.58359 NaN NaN NaN NaN NaN NaN NaN 174.53 1 169.75 169.25 170.25 -4.7898 0 0 0 0.22775 1 35661 35661 10.074 1.3285 1 + 3744 21567 2145 2148 4124 4124 0.046981817976075035 APGASHLSRKG 11 Unmodified _APGASHLSRKG_ 0 0 0 REV__ENST00000426395.7_1_19:50017307-50017501:+|nuORF REV__ENST00000426395.7_1_19:50017307-50017501:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 540.79833984375 2 540.799072 1079.58359 NaN NaN NaN NaN NaN NaN NaN 174.55 1 169.76 169.26 170.26 -4.7898 0 0 0 0.21688 1 35664 35664 14.838 6.0929 1 + 3745 21567 2145 2148 4125 4125 0.046981817976075035 APGAVHMRVK 10 Unmodified _APGAVHMRVK_ 0 0 0 ENSG00000178718|ENST00000322177|RPP25;RPP25|p.P154Rfs*20|1|0.24|ENSG00000178718|chr15:74956123-74956123|G/-|frameshift_variant;RPP25|p.P110Rfs*64|1|0.71|ENSG00000178718|chr15:74956255-74956255|G/-|frameshift_variant ENSG00000178718|ENST00000322177|RPP25 ENSG00000178718|ENST00000322177|RPP25 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2869262695312 2 533.302936 1064.59132 NaN NaN NaN NaN NaN NaN NaN 152.38 1 147.63 147.13 148.13 -4.7523 0 0 0 0.22561 1 30280 30280 16.942 1.0951 1 3746 6590 2146 2149 4126 4126 0.06160617793534584 APGAYVFRY 9 Unmodified _APGAYVFRY_ 0 0 0 REV__ENST00000485807.1_1_1:227921606-227921849:-|nuORF REV__ENST00000485807.1_1_1:227921606-227921849:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2705688476562 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 164.83 1 159.76 159.26 160.26 -5.0648 0 0 0 0.23508 1 32173 32173 9.3474 1.4373 1 + 3747 14430 2147 2150 4127 4127 0.004054911343700951 APGCIFRKA 9 Unmodified _APGCIFRKA_ 0 0 0 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76641845703125 2 481.765655 961.516756 NaN NaN NaN NaN NaN NaN NaN 171.97 1 171.97 171.47 172.47 0 0 0 0 0.23508 1 35473 35473 8.5933 1.304 1 3748 7956 2148 2151 4128 4128 0.03445854982146557 APGDEDDSSSS 11 Unmodified _APGDEDDSSSS_ 0 0 0 REV__ARID4A|p.D423Rfs*24|1|0.27|ENSG00000032219|chr14:58347732-58347733|-/A|frameshift_variant REV__ARID4A|p.D423Rfs*24|1|0.27|ENSG00000032219|chr14:58347732-58347733|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2847900390625 2 533.693997 1065.37344 0.18997 0.00010138 -2.8943 -0.0015447 -2.7044 -0.0014433 533.69196840098 109.76 0.20607 109.76 109.61 109.82 0 6 5 2 0 0 0 0.88709 1 21554 21554 13.042 7.8118 1 1177200 + 3749 13118 2149 2152 4129 4129 -0.15662990176542735 APGDYEEMM 9 Unmodified _APGDYEEMM_ 0 0 0 nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B nc|ENSG00000213676|Q99941-2|ATF6B nc|ENSG00000213676|Q99941-2|ATF6B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.277099609375 2 521.696443 1041.37833 -0.62511 -0.00032612 -0.97507 -0.00050869 -1.6002 -0.00083481 521.6956280022778 144.42 0.1394 139.35 139.25 139.38 -5.0671 5 3 2 0 0 0 0.87788 1 27845 27845 2.3027 1.778 1 1749800 3750 7702 2150 2153 4130 4130 -0.14070100839148836 APGEDPMDYK 10 Unmodified _APGEDPMDYK_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000487537.2_1_19:40747718-40761168:-|nuORF;ENST00000537834.5_1_19:40745726-40771198:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 nc|ENSG00000105221|P31751-2|AKT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2108459472656 3 374.830585 1121.46993 -1.7796 -0.00066703 1.721 0.00064508 -0.058573 -2.1955E-05 374.83126751628436 18.933 0.21276 17.297 17.146 17.359 -1.6351 7 5 2 0 0 0 0.91149 1 2820 2820 3.3196 0 1 223710 3751 2287 2151 2154 4131 4131 -0.08595094150314253 APGEEFHDVED 11 Unmodified _APGEEFHDVED_ 0 0 0 ENSG00000142552|ENST00000270645|RCN3 ENSG00000142552|ENST00000270645|RCN3 ENSG00000142552|ENST00000270645|RCN3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7559204101562 2 622.756932 1243.49931 NaN NaN NaN NaN NaN NaN NaN 26.099 1 24.464 23.964 24.964 -1.6347 0 0 0 0.23698 1 4318 4318 1.4819 0 1 3752 4427 2152 2155 4132 4132 -0.11269858600462612 APGELALA 8 Unmodified _APGELALA_ 0 0 0 ENSG00000204060|ENST00000641094|FOXO6 ENSG00000204060|ENST00000641094|FOXO6 ENSG00000204060|ENST00000641094|FOXO6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.4028930664062 1 741.414131 740.406855 0.79962 0.00059285 -3.4124 -0.00253 -2.6127 -0.0019371 741.4094269132572 156.1 0.20647 151.32 151.23 151.43 -4.7791 6 5 2 0 0 0 0.72861 1 31038 31038 10.183 0 1 1566200 3753 7556 2153 2156 4133 4133 0.026267529146139168 APGETIQTL 9 Unmodified _APGETIQTL_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ADGRV1|p.S2670Rfs*9|1|0.05|ENSG00000164199|chr5:90697000-90697001|-/GCCCAAAATAATT|frameshift_variant ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24920654296875 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 169.8 1 169.8 169.3 170.3 0 0 0 0 0.21848 1 34867 34867 18.135 4.6271 1 3754 5525 2154 2157 4134 4134 0.01945774797957256 APGFLCGLIVG 11 Unmodified _APGFLCGLIVG_ 0 0 0 REV__ENST00000490872.1_1_2:219254703-219256473:+|nuORF REV__ENST00000490872.1_1_2:219254703-219256473:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6998291015625 2 523.788795 1045.56304 -0.44208 -0.00023156 -2.9592 -0.00155 -3.4013 -0.0017815 523.7868579358889 140.9 0.34943 135.91 135.75 136.1 -4.9877 19 9 3 0 0 0 0.8485 1 27120 27120 10.824 0 1 1909000 + 3755 13971 2155 2158 4135 4135 0.04207875093607072 APGGANRVLLD 11 Unmodified _APGGANRVLLD_ 0 0 0 REV__ENST00000550375.1_1_14:105714398-105714842:-|nuORF REV__ENST00000550375.1_1_14:105714398-105714842:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2784423828125 2 541.80128 1081.58801 0.3174 0.00017197 3.4524 0.0018705 3.7698 0.0020425 541.8016183667797 131.29 0.13742 131.29 131.19 131.33 0 5 3 2 0 0 0 0.91954 1 25952 25952 9.3831 4.0862 1 996530 + 3756 22923 2156 2159 4136 4136 0.050476462205324424 APGGCGCGC 9 Unmodified _APGGCGCGC_ 0 0 0 ENST00000262304.8_1_16:2143686-2144130:-|nuORF ENST00000262304.8_1_16:2143686-2144130:-|nuORF ENST00000262304.8_1_16:2143686-2144130:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 723.8408203125 1 724.221127 723.213851 0.42844 0.00031029 -2.0187 -0.001462 -1.5903 -0.0011517 724.215583947569 166.16 0.13898 161.17 161.09 161.22 -4.9811 5 3 2 0 0 0 0.87788 1 32553 32553 2.3027 1.5091 1 11952000 3757 8311 2157 2160 4137 4137 -0.1588277174008681 APGGNSGN 8 Unmodified _APGGNSGN_ 0 0 0 ENST00000534667.1_1_11:64880702-64881078:+|nuORF;ENST00000532328.5_1_11:64880864-64882880:+|nuORF;ENST00000533766.5_1_11:64880615-64882334:+|nuORF;nc|ENSG00000149809|O76062-2|TM7SF2;ENST00000529601.5_1_11:64879444-64883522:+|nuORF;ENSG00000149809|ENST00000279263|TM7SF2;ENST00000530650.5_1_11:64879967-64883522:+|nuORF ENST00000534667.1_1_11:64880702-64881078:+|nuORF ENST00000534667.1_1_11:64880702-64881078:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.1434020996094 2 337.148635 672.282717 NaN NaN NaN NaN NaN NaN NaN 48.647 1 45.778 45.278 46.278 -2.869 0 0 0 0.23749 1 9204 9204 0.063987 0 1 3758 4812 2158 2161 4138 4138 -0.06653324852857168 APGGSDDWIY 10 Unmodified _APGGSDDWIY_ 0 0 0 CON__Q2KIG3 CON__Q2KIG3 CON__Q2KIG3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.284423828125 2 540.735271 1079.45599 0.29394 0.00015895 -2.4322 -0.0013152 -2.1383 -0.0011562 541.2351798371528 133.77 0.16934 133.77 133.7 133.87 0 5 4 2 0 0 0 0.91046 1 26471 26471 7.9102 0 1 1763900 + 3759 685 2159 2162 4139 4139 -0.08056003587103078 APGGTQMEKY 10 Unmodified _APGGTQMEKY_ 0 0 0 ENST00000476549.6_2_6:26409785-26411358:+|nuORF ENST00000476549.6_2_6:26409785-26411358:+|nuORF ENST00000476549.6_2_6:26409785-26411358:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2658081054688 2 541.252774 1080.491 NaN NaN NaN NaN NaN NaN NaN 155.6 1 150.32 149.82 150.82 -5.2854 0 0 0 0.22588 1 30179 30179 12.532 3.9383 1 3760 10291 2160 2163 4140 4140 -0.0460308405079104 APGHMSDVEWM 11 Unmodified _APGHMSDVEWM_ 0 0 0 nc|ENSG00000130783|Q6P9F0-3|CCDC62;CCDC62|p.S601Lfs*10|1|0.07|ENSG00000130783|chr12:122806244-122806245|-/TTAAAACAATA|frameshift_variant;CCDC62|p.N600Kfs*18|1|0.07|ENSG00000130783|chr12:122806243-122806244|-/ATAT|frameshift_variant;nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-3|CCDC62 nc|ENSG00000130783|Q6P9F0-3|CCDC62 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.262939453125 2 630.262816 1258.51108 NaN NaN NaN NaN NaN NaN NaN 168.49 1 163.7 163.2 164.2 -4.7898 0 0 0 0.23594 1 34062 34062 3.5965 0 1 3761 423 2161 2164 4141 4141 -0.10783656382477602 APGHRSRPARV 11 Unmodified _APGHRSRPARV_ 0 0 0 REV__ENST00000260356.5_1_15:39876606-39880293:+|nuORF REV__ENST00000260356.5_1_15:39876606-39880293:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2787475585938 2 602.344512 1202.67447 NaN NaN NaN NaN NaN NaN NaN 136.53 1 131.89 131.39 132.39 -4.6399 0 0 0 0.22501 1 26939 26939 12.241 2.1667 1 + 3762 20155 2162 2165 4142 4142 0.08124070565736474 APGIALVRRL 10 Unmodified _APGIALVRRL_ 0 0 0 ENST00000259698.8_3_6:24911085-24911175:-|nuORF ENST00000259698.8_3_6:24911085-24911175:-|nuORF ENST00000259698.8_3_6:24911085-24911175:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2755126953125 2 533.3482 1064.68185 NaN NaN NaN NaN NaN NaN NaN 163.14 1 157.95 157.45 158.45 -5.1878 0 0 0 0.22588 1 31726 31726 7.9102 0.62092 1 3763 8275 2163 2166 4143 4143 0.15209410113470767 APGIWTQGCY 10 Unmodified _APGIWTQGCY_ 0 0 0 REV__ENST00000392432.6_1_3:194308948-194309179:-|nuORF REV__ENST00000392432.6_1_3:194308948-194309179:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7664184570312 2 548.250034 1094.48552 0.32628 0.00017888 0.75432 0.00041356 1.0806 0.00059244 548.7534097136653 129.09 0.24884 129.09 128.91 129.16 0 9 6 2 0 0 0 0.91046 1 25491 25491 4.3292 0.38484 1 1050700 + 3764 21218 2164 2167 4144 4144 -0.0579476284260636 APGLALPHAHP 11 Unmodified _APGLALPHAHP_ 0 0 0 REV__ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant REV__ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2705688476562 2 540.801083 1079.58761 0.2694 0.00014569 2.3136 0.0012512 2.583 0.0013969 541.3047778606383 170.86 0.13675 165.94 165.86 166 -4.9149 5 3 2 0 0 0 0.71361 1 33787 33787 10.824 3.5347 1 3066300 + 3765 13034 2165 2168 4145 4145 0.051002712913032155 APGLAWLQALL 11 Unmodified _APGLAWLQALL_ 0 0 0 REV__ENST00000463710.1_1_22:20102137-20102676:-|nuORF REV__ENST00000463710.1_1_22:20102137-20102676:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.877197265625 2 576.842416 1151.67028 NaN NaN NaN NaN NaN NaN NaN 163.11 1 157.92 157.42 158.42 -5.1878 0 0 0 0.23199 1 31720 31720 6.7232 0.51738 1 + 3766 21925 2166 2169 4146 4146 0.10051168299469282 APGLCPDWESW 11 Unmodified _APGLCPDWESW_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant;FLNB|p.A832Rfs*9|1|0.26|ENSG00000136068|chr3:58111795-58111796|-/C|frameshift_variant;FLNB|p.H532Tfs*9|1|0.31|ENSG00000136068|chr3:58104060-58104061|-/G|frameshift_variant;FLNB|p.G531Dfs*42|3|0.4|ENSG00000136068|chr3:58104061-58104061|G/-|frameshift_variant;FLNB|p.N453Kfs*26|1|0.31|ENSG00000136068|chr3:58102212-58102213|-/A|frameshift_variant nc|ENSG00000136068|O75369-5|FLNB nc|ENSG00000136068|O75369-5|FLNB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.5132446289062 2 630.771331 1259.52811 NaN NaN NaN NaN NaN NaN NaN 169.86 1 169.86 169.36 170.36 0 0 0 0 0.23199 1 34885 34885 6.7232 2.7788 1 3767 3982 2167 2170 4147 4147 -0.09127412505040411 APGLEGGPRDP 11 Unmodified _APGLEGGPRDP_ 0 0 0 ENSG00000090565|ENST00000262305|RAB11FIP3;nc|ENSG00000090565|O75154-3|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2685546875 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 152.97 1 152.97 152.47 153.47 0 0 0 0 0.23324 1 30645 30645 5.7319 0.97584 1 3768 1788 2168 2171 4148 4148 -0.004609195675357114 APGLFQALLDP 11 Unmodified _APGLFQALLDP_ 0 0 0 ENST00000461960.5_1_20:48712619-48713239:-|nuORF ENST00000461960.5_1_20:48712619-48713239:-|nuORF ENST00000461960.5_1_20:48712619-48713239:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 571.220458984375 2 571.316232 1140.61791 NaN NaN NaN NaN NaN NaN NaN 164.78 1 159.72 159.22 160.22 -5.0648 0 0 0 0.22085 1 32160 32160 13.906 3.8321 1 3769 10080 2169 2172 4149 4149 0.053225851658453394 APGLGAVHNDM 11 Unmodified _APGLGAVHNDM_ 0 0 0 REV__nc|ENSG00000055118|Q12809-5|KCNH2 REV__nc|ENSG00000055118|Q12809-5|KCNH2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2598876953125 2 541.258391 1080.50223 NaN NaN NaN NaN NaN NaN NaN 177.82 1 173.03 172.53 173.53 -4.7898 0 0 0 0.23199 1 36375 36375 6.7232 0 1 + 3770 14112 2170 2173 4150 4150 -0.0348026195665625 APGLGDFFFD 10 Unmodified _APGLGDFFFD_ 0 0 0 REV__ENSG00000183186|ENST00000332235|C2CD4C REV__ENSG00000183186|ENST00000332235|C2CD4C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.2593994140625 2 543.250557 1084.48656 NaN NaN NaN NaN NaN NaN NaN 171.37 1 166.58 166.08 167.08 -4.7898 0 0 0 0.22588 1 34840 34840 7.9102 0.62092 1 + 3771 18823 2171 2174 4151 4151 -0.05230225202058136 APGLLAPGRRK 11 Unmodified _APGLLAPGRRK_ 0 0 0 ENST00000564128.1_1_16:67865591-67866126:-|nuORF;ENST00000569862.5_1_16:67865068-67866179:-|nuORF;ENST00000562947.5_1_16:67864542-67866179:-|nuORF;nc|ENSG00000102901|Q96BT3-2|CENPT;ENST00000565157.5_1_16:67864257-67867798:-|nuORF;ENSG00000102901|ENST00000562787|CENPT ENST00000564128.1_1_16:67865591-67866126:-|nuORF ENST00000564128.1_1_16:67865591-67866126:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 568.2913818359375 2 568.356557 1134.69856 NaN NaN NaN NaN NaN NaN NaN 170.58 1 165.79 165.29 166.29 -4.7898 0 0 0 0.23264 1 34626 34626 6.2058 1.8765 1 3772 2152 2172 2175 4152 4152 0.13659910999399472 APGLPVWRGI 10 Unmodified _APGLPVWRGI_ 0 0 0 REV__ENSG00000188032|ENST00000548523|C19orf67 REV__ENSG00000188032|ENST00000548523|C19orf67 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.275146484375 2 533.313826 1064.6131 NaN NaN NaN NaN NaN NaN NaN 160.29 1 155.04 154.54 155.54 -5.2526 0 0 0 0.22588 1 31108 31108 10.824 0.75 1 + 3773 19126 2173 2176 4153 4153 0.08337745813742004 APGLVRGRH 9 Unmodified _APGLVRGRH_ 0 0 0 REV__ENST00000581795.5_1_17:80426730-80441656:+|nuORF REV__ENST00000581795.5_1_17:80426730-80441656:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7839050292969 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 163.45 1 158.66 158.16 159.16 -4.7898 0 0 0 0.23508 1 32582 32582 8.5933 0 1 + 3774 23245 2174 2177 4154 4154 0.07466537696939213 APGMYTEMYQ 10 Unmodified _APGMYTEMYQ_ 0 0 0 REV__nc|ENSG00000108424|Q14974-2|KPNB1 REV__nc|ENSG00000108424|Q14974-2|KPNB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 397.90289306640625 3 397.50007 1189.47838 -0.12941 -5.1442E-05 -0.78154 -0.00031066 -0.91095 -0.0003621 397.83264374305656 16.312 0.20609 16.312 16.199 16.405 0 11 5 3 0 0 0 0.91149 1 2510 2510 0.69767 0 1 504600 + 3775 15123 2175 2178 4155 4155 -0.10877863505311325 APGNDRFPGL 10 Unmodified _APGNDRFPGL_ 0 0 0 DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8 DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2642822265625 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 135.33 1 130.44 129.94 130.94 -4.8951 0 0 0 0.22588 1 25996 25996 11.64 1.4569 1 3776 881 2176 2179 4156 4156 3.401640651645721E-05 APGPGTHDPL 10 Unmodified _APGPGTHDPL_ 0 0 0 REV__ENST00000344119.6_1_9:140330651-140331360:-|nuORF REV__ENST00000344119.6_1_9:140330651-140331360:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23968505859375 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 156.47 1 151.2 150.7 151.7 -5.2712 0 0 0 0.22588 1 30346 30346 6.7232 0.36906 1 + 3777 20740 2177 2180 4157 4157 -0.015319761420073519 APGPLSAEPFT 11 Unmodified _APGPLSAEPFT_ 0 0 0 REV__ENST00000604081.1_1_12:54388685-54388883:-|nuORF REV__ENST00000604081.1_1_12:54388685-54388883:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7783813476562 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 165.5 1 160.71 160.21 161.21 -4.7898 0 0 0 0.23199 1 33149 33149 6.7232 0.51738 1 + 3778 23442 2178 2181 4158 4158 -2.2671392343909247E-05 APGPLWLTHLR 11 Unmodified _APGPLWLTHLR_ 0 0 0 REV__ENST00000164024.4_1_3:48689051-48689879:-|nuORF REV__ENST00000164024.4_1_3:48689051-48689879:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7652587890625 2 630.864215 1259.71388 NaN NaN NaN NaN NaN NaN NaN 168.67 1 163.75 163.25 164.25 -4.9295 0 0 0 0.23018 1 33264 33264 8.1555 0.54658 1 + 3779 19978 2179 2182 4159 4159 0.09440777796589828 APGPNGAECQC 11 Unmodified _APGPNGAECQC_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6995849609375 2 523.705134 1045.39571 NaN NaN NaN NaN NaN NaN NaN 144.34 1 144.34 143.84 144.84 0 0 0 0 0.23264 1 28834 28834 6.2058 0.97511 1 3780 1627 2180 2183 4160 4160 -0.12516760513472036 APGPPEPAAL 10 Unmodified _APGPPEPAAL_ 0 0 0 REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1 REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2467956542969 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 115.86 1 111.51 111.01 112.01 -4.3585 0 0 0 0.21968 1 22304 22304 24.674 11.166 1 + 3781 16221 2181 2184 4161 4161 0.01858096006139931 APGPPPLRCGT 11 Unmodified _APGPPPLRCGT_ 0 0 0 REV__ENST00000482704.1_1_2:96688855-96689146:-|nuORF REV__ENST00000482704.1_1_2:96688855-96689146:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27685546875 2 533.279126 1064.5437 NaN NaN NaN NaN NaN NaN NaN 171.88 1 171.88 171.38 172.38 0 0 0 0 0.22775 1 35446 35446 10.074 0.6908 1 + 3782 22193 2182 2185 4162 4162 0.014009188026875563 APGPRGWKEP 10 Unmodified _APGPRGWKEP_ 0 0 0 ENST00000352879.8_1_2:241526300-241537498:+|nuORF ENST00000352879.8_1_2:241526300-241537498:+|nuORF ENST00000352879.8_1_2:241526300-241537498:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7931518554688 2 547.790715 1093.56688 NaN NaN NaN NaN NaN NaN NaN 161.23 1 161.23 160.73 161.73 0 0 0 0 0.22588 1 32380 32380 11.64 1.5664 1 3783 8933 2183 2186 4163 4163 0.02383680911657393 APGPRQVPRVR 11 Unmodified _APGPRQVPRVR_ 0 0 0 REV__ENST00000263256.6_1_22:42003308-42016868:-|nuORF REV__ENST00000263256.6_1_22:42003308-42016868:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 616.8173217773438 2 616.870363 1231.72617 NaN NaN NaN NaN NaN NaN NaN 145.75 1 141.07 140.57 141.57 -4.6868 0 0 0 0.23264 1 28894 28894 6.2058 2.2614 1 + 3784 20207 2184 2187 4164 4164 0.1195781425963105 APGPWTMR 8 Unmodified _APGPWTMR_ 0 0 0 REV__ENSG00000101298|ENST00000381867|SNPH REV__ENSG00000101298|ENST00000381867|SNPH MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2276611328125 2 458.228905 914.443257 NaN NaN NaN NaN NaN NaN NaN 165.39 1 160.44 159.94 160.94 -4.9484 0 0 0 0.21486 1 32313 32313 11.114 0 1 + 3785 14773 2185 2188 4165 4165 -0.017386934603109694 APGQCWSPFRL 11 Unmodified _APGQCWSPFRL_ 0 0 0 REV__ENST00000341690.10_1_16:84218491-84220645:-|nuORF REV__ENST00000341690.10_1_16:84218491-84220645:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7540893554688 2 631.310958 1260.60736 0.49373 0.0003117 -3.0527 -0.0019272 -2.559 -0.0016155 631.3071651947522 139.37 0.17288 134.52 134.42 134.6 -4.8492 7 4 2 0 0 0 0.95894 1 26862 26862 5.2969 2.7984 1 825540 + 3786 20716 2186 2189 4166 4166 -0.012517207602286362 APGREDTGL 9 Unmodified _APGREDTGL_ 0 0 0 ENSG00000167676|ENST00000301286|PLIN4 ENSG00000167676|ENST00000301286|PLIN4 ENSG00000167676|ENST00000301286|PLIN4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23040771484375 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 93.223 1 93.223 92.723 93.723 0 0 0 0 0.22251 1 18238 18238 16.942 1.0951 1 3787 5832 2187 2190 4167 4167 -0.0148856652166387 APGREYTY 8 Unmodified _APGREYTY_ 0 0 0 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant;F5|p.G1754Efs*13|1|0.41|ENSG00000198734|chr1:169529768-169529768|T/-|frameshift_variant;ENSG00000198734|ENST00000367797|F5 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7261657714844 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 172.85 1 172.85 172.35 173.35 0 0 0 0 0.21486 1 35705 35705 6.3541 0 1 3788 7482 2188 2191 4168 4168 -0.039556650333452126 APGRGLIDEIY 11 Unmodified _APGRGLIDEIY_ 0 0 0 REV__ENST00000551454.1_1_10:94449743-94451337:+|nuORF REV__ENST00000551454.1_1_10:94449743-94451337:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2880859375 2 602.322045 1202.62954 0.39531 0.00023811 -1.1874 -0.0007152 -0.7921 -0.0004771 602.3208601553307 150.76 0.42487 150.76 150.49 150.92 0 16 11 2 0 0 0 0.48798 1 30196 30196 23.79 3.3362 1 3363700 + 3789 17124 2189 2192 4169 4169 0.036327821891973144 APGRGLIDEIY 11 Unmodified _APGRGLIDEIY_ 0 0 0 REV__ENST00000551454.1_1_10:94449743-94451337:+|nuORF REV__ENST00000551454.1_1_10:94449743-94451337:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2803955078125 2 602.322045 1202.62954 NaN NaN NaN NaN NaN NaN NaN 156.58 1 151.31 150.81 151.81 -5.2712 0 0 0 0.18353 1 30368 30368 22.658 2.2045 1 + 3790 17124 2189 2192 4170 4170 0.036327821891973144 APGRLLPHKY 10 Unmodified _APGRLLPHKY_ 0 0 0 REV__ENSG00000186094|ENST00000371839|AGBL4 REV__ENSG00000186094|ENST00000371839|AGBL4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3362426757812 2 576.337833 1150.66111 NaN NaN NaN NaN NaN NaN NaN 29.146 1 27.253 26.753 27.753 -1.8928 0 0 0 0.22588 1 4947 4947 7.2892 0.56607 1 + 3791 19011 2190 2193 4171 4171 0.09180819733796852 APGRLRSLR 9 Unmodified _APGRLRSLR_ 0 0 0 REV__ENST00000370551.8_1_1:87380589-87538650:+|nuORF REV__ENST00000370551.8_1_1:87380589-87538650:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 513.3329467773438 2 513.319974 1024.6254 NaN NaN NaN NaN NaN NaN NaN 164.83 1 159.76 159.26 160.26 -5.0648 0 0 0 0.23508 1 32174 32174 12.532 4.6214 1 + 3792 20985 2191 2194 4172 4172 0.11406782276776539 APGRMMRT 8 Unmodified _APGRMMRT_ 0 0 0 REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2321472167969 2 460.233664 918.452776 NaN NaN NaN NaN NaN NaN NaN 162.08 1 162.08 161.58 162.58 0 0 0 0 0.21486 1 32564 32564 7.9102 3.1541 1 + 3793 22064 2192 2195 4173 4173 -0.009712484464330373 APGRPQPWA 9 Unmodified _APGRPQPWA_ 0 0 0 REV__nc|ENSG00000176753|Q8N910|PAK6-AS1 REV__nc|ENSG00000176753|Q8N910|PAK6-AS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2574157714844 2 490.259051 978.503549 NaN NaN NaN NaN NaN NaN NaN 162.72 1 162.72 162.22 163.22 0 0 0 0 0.23411 1 32737 32737 13.508 0.46542 1 + 3794 24184 2193 2196 4174 4174 0.013437401944202065 APGRRGRH 8 Unmodified _APGRRGRH_ 0 0 0 REV__ENST00000282388.3_2_2:43451527-43452328:-|nuORF REV__ENST00000282388.3_2_2:43451527-43452328:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75921630859375 2 453.760084 905.505615 NaN NaN NaN NaN NaN NaN NaN 164.43 1 164.43 163.93 164.93 0 0 0 0 0.20568 1 33249 33249 20.871 0 1 + 3795 20312 2194 2197 4175 4175 0.049082137228992906 APGRWWLQRRQ 11 Unmodified _APGRWWLQRRQ_ 0 0 0 ENST00000262919.9_1_20:3451704-3451788:+|nuORF ENST00000262919.9_1_20:3451704-3451788:+|nuORF ENST00000262919.9_1_20:3451704-3451788:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 727.3975219726562 2 727.399818 1452.78508 NaN NaN NaN NaN NaN NaN NaN 38.363 1 35.826 35.326 36.326 -2.5378 0 0 0 0.23634 1 7108 7108 3.2813 1.6287 1 3796 8318 2195 2198 4176 4176 0.07680290553958002 APGSADLNGQ 10 Unmodified _APGSADLNGQ_ 0 0 0 REV__nc|ENSG00000167600|Q96SQ9-2|CYP2S1 REV__nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2363586425781 2 465.219788 928.425024 NaN NaN NaN NaN NaN NaN NaN 164.75 1 159.96 159.46 160.46 -4.7898 0 0 0 0.22588 1 32947 32947 7.2892 0.93513 1 + 3797 17942 2196 2199 4177 4177 -0.04205156901321061 APGSMRYCL 9 Unmodified _APGSMRYCL_ 0 0 0 ENST00000547654.5_1_12:46312947-46313043:-|nuORF ENST00000547654.5_1_12:46312947-46313043:-|nuORF ENST00000547654.5_1_12:46312947-46313043:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 498.9144287109375 2 499.23333 996.452107 0.19562 9.7659E-05 0.96957 0.00048404 1.1652 0.0005817 499.2337096307512 136.62 1.1752 136.62 136.16 137.34 0 75 33 3 0 0 0 0.85699 1 27208 27208 2.3027 2.3027 1 21312000 3798 11142 2197 2200 4178 4178 -0.04626087886163077 APGSMRYCL 9 Unmodified _APGSMRYCL_ 0 0 0 ENST00000547654.5_1_12:46312947-46313043:-|nuORF ENST00000547654.5_1_12:46312947-46313043:-|nuORF ENST00000547654.5_1_12:46312947-46313043:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 499.23333 996.452107 0.061607 3.0756E-05 1.25 0.00062402 1.3116 0.00065478 499.23384022784484 141.64 1.3928 136.99 136.44 137.83 -4.6493 0.1768 0.00012373 NaN 2.3027 96 39 3 NaN NaN NaN NaN 0 NaN NaN 0 18500000 3799 11142 2197 2200 -0.04626087886163077 APGSMRYCL 9 Unmodified _APGSMRYCL_ 0 0 0 ENST00000547654.5_1_12:46312947-46313043:-|nuORF ENST00000547654.5_1_12:46312947-46313043:-|nuORF ENST00000547654.5_1_12:46312947-46313043:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 499.23333 996.452107 0.11957 5.9693E-05 1.0838 0.00054108 1.2034 0.00060077 499.2338117308732 141.65 1.2312 136.78 136.4 137.63 -4.8678 -0.035 -4.2157E-05 NaN 2.3027 86 34 3 NaN NaN NaN NaN 0 NaN NaN 0 12563000 3800 11142 2197 2200 -0.04626087886163077 APGSRRWPQP 10 Unmodified _APGSRRWPQP_ 0 0 0 ENST00000474511.1_1_1:16270449-16270866:-|nuORF ENST00000474511.1_1_1:16270449-16270866:-|nuORF ENST00000474511.1_1_1:16270449-16270866:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3204345703125 2 576.307064 1150.59957 NaN NaN NaN NaN NaN NaN NaN 169.54 1 164.75 164.25 165.25 -4.7898 0 0 0 0.22569 1 34349 34349 15.847 3.6065 1 3801 10259 2198 2201 4179 4179 0.030298880345071666 APGSRRWPQP 10 Unmodified _APGSRRWPQP_ 0 0 0 ENST00000474511.1_1_1:16270449-16270866:-|nuORF ENST00000474511.1_1_1:16270449-16270866:-|nuORF ENST00000474511.1_1_1:16270449-16270866:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3203735351562 2 576.307064 1150.59957 NaN NaN NaN NaN NaN NaN NaN 166.85 1 161.9 161.4 162.4 -4.948 0 0 0 0.22518 1 32759 32759 22.736 3.3743 1 3802 10259 2198 2201 4180 4180 0.030298880345071666 APGSSLRVAA 10 Unmodified _APGSSLRVAA_ 0 0 0 ENSG00000203772|ENST00000685335|SPRN ENSG00000203772|ENST00000685335|SPRN ENSG00000203772|ENST00000685335|SPRN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2398986816406 2 464.764166 927.513779 -0.49563 -0.00023035 0.16284 7.5683E-05 -0.33279 -0.00015467 464.7639787189908 36.34 0.42313 33.947 33.735 34.158 -2.3938 22 11 3 0 0 0 0.86078 1 6727 6727 8.1555 0.54658 1 846540 3803 7548 2199 2202 4181 4181 0.047123031289856954 APGSSLRVAA 10 Unmodified _APGSSLRVAA_ 0 0 0 ENSG00000203772|ENST00000685335|SPRN ENSG00000203772|ENST00000685335|SPRN ENSG00000203772|ENST00000685335|SPRN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2399597167969 2 464.764166 927.513779 0.085272 3.9632E-05 -0.48167 -0.00022386 -0.39639 -0.00018423 464.76393860698295 36.372 0.31195 34.024 33.828 34.14 -2.3479 14 8 2 0 0 0 0.86078 1 6421 6421 8.1555 2.4237 1 920800 3804 7548 2199 2202 4182 4182 0.047123031289856954 APGSSQLQKQ 10 Unmodified _APGSSQLQKQ_ 0 0 0 ENST00000425398.6_1_7:6465721-6476082:-|nuORF ENST00000425398.6_1_7:6465721-6476082:-|nuORF ENST00000425398.6_1_7:6465721-6476082:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2755737304688 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 172.57 1 167.67 167.17 168.17 -4.8977 0 0 0 0.22588 1 34232 34232 7.2892 0.56607 1 3805 9716 2200 2203 4183 4183 0.021153669495106442 APGSSWLRRG 10 Unmodified _APGSSWLRRG_ 0 0 0 COL18A1|p.R608Gfs*27|1|0.21|ENSG00000182871|chr21:45468712-45468712|C/-|frameshift_variant COL18A1|p.R608Gfs*27|1|0.21|ENSG00000182871|chr21:45468712-45468712|C/-|frameshift_variant COL18A1|p.R608Gfs*27|1|0.21|ENSG00000182871|chr21:45468712-45468712|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7931518554688 2 543.793789 1085.57303 NaN NaN NaN NaN NaN NaN NaN 152.49 1 152.49 151.99 152.99 0 0 0 0 0.22588 1 30542 30542 10.074 0 1 3806 617 2201 2204 4184 4184 0.03366199143169979 APGSVLLDLY 10 Unmodified _APGSVLLDLY_ 0 0 0 REV__DPH2|p.S179G|1|0.17|ENSG00000132768|chr1:43971437-43971437|A/G|missense_variant REV__DPH2|p.S179G|1|0.17|ENSG00000132768|chr1:43971437-43971437|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6908569335938 2 524.289682 1046.56481 -0.51418 -0.00026958 -1.1664 -0.00061154 -1.6806 -0.00088112 524.2902905593976 37.911 0.76662 35.442 35.116 35.882 -2.4688 52 21 4 0 0 0 0.8888 1 7013 7013 11.64 3.7301 1 5688600 + 3807 13744 2202 2205 4185 4185 0.04339207383213761 APGTHRPLRF 10 Unmodified _APGTHRPLRF_ 0 0 0 REV__ENST00000506025.1_2_5:176922079-176930550:+|nuORF REV__ENST00000506025.1_2_5:176922079-176930550:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3375854492188 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 138.41 1 138.41 137.91 138.91 0 0 0 0 0.22576 1 27478 27478 14.838 4.7643 1 + 3808 22484 2203 2206 4186 4186 0.06666764931219404 APGTTSRLK 9 Unmodified _APGTTSRLK_ 0 0 0 ENST00000429224.1_1_9:139440687-139440822:+|nuORF ENST00000429224.1_1_9:139440687-139440822:+|nuORF ENST00000429224.1_1_9:139440687-139440822:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24578857421875 2 465.771991 929.529429 0.75944 0.00035372 -0.32705 -0.00015233 0.43238 0.00020139 465.771886990076 23.498 0.14206 21.945 21.834 21.976 -1.5532 5 3 2 0 0 0 0.8319 1 4038 4038 12.532 5.8084 1 312180 3809 9759 2204 2207 4187 4187 0.061845896460340555 APGVERVTLTH 11 Unmodified _APGVERVTLTH_ 0 0 0 REV__MYBPC3|p.G261Afs*39|1|0.39|ENSG00000134571|chr11:47347896-47347896|C/-|frameshift_variant REV__MYBPC3|p.G261Afs*39|1|0.39|ENSG00000134571|chr11:47347896-47347896|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2769165039062 2 590.327662 1178.64077 NaN NaN NaN NaN NaN NaN NaN 134.26 1 129.44 128.94 129.94 -4.8175 0 0 0 0.22501 1 25848 25848 12.241 4.3305 1 + 3810 16217 2205 2208 4188 4188 0.058596042833414685 APGVFAGFHY 10 Unmodified _APGVFAGFHY_ 0 0 0 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant;ENSG00000112787|ENST00000680143|FBRSL1;nc|ENSG00000112787|Q9HCM7|FBRSL1 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant;nc|ENSG00000112787|Q9HCM7|FBRSL1 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2620239257812 2 533.261259 1064.50797 NaN NaN NaN NaN NaN NaN NaN 169.31 1 164.44 163.94 164.94 -4.873 0 0 0 0.22588 1 33431 33431 12.532 3.1484 1 3811 2712;12288 2206 2209 4189 4189 -0.02170795382653523 APGVGPPFSQ 10 Unmodified _APGVGPPFSQ_ 0 0 0 ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25 ENSG00000104973|ENST00000312865|MED25 ENSG00000104973|ENST00000312865|MED25 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7436828613281 2 478.745442 955.476331 NaN NaN NaN NaN NaN NaN NaN 169.09 1 169.09 168.59 169.59 0 0 0 0 0.22576 1 34695 34695 14.838 1.3304 1 3812 2273 2207 2210 4190 4190 -0.003187881366216061 APGVGSVFTPY 11 Unmodified _APGVGSVFTPY_ 0 0 0 REV__nc|ENSG00000175003|O15245-2|SLC22A1 REV__nc|ENSG00000175003|O15245-2|SLC22A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.777587890625 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 169.5 1 164.63 164.13 165.13 -4.873 0 0 0 0.21688 1 33478 33478 14.838 3.198 1 + 3813 24179 2208 2211 4191 4191 0.0013803672338781325 APGVQCEQTDR 11 Unmodified _APGVQCEQTDR_ 0 0 0 ENST00000561659.5_1_16:57508703-57509771:-|nuORF;ENSG00000125170|ENST00000340099|DOK4 ENST00000561659.5_1_16:57508703-57509771:-|nuORF ENST00000561659.5_1_16:57508703-57509771:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2738037109375 2 602.274769 1202.53499 NaN NaN NaN NaN NaN NaN NaN 136.75 1 131.83 131.33 132.33 -4.9216 0 0 0 0.23199 1 26284 26284 6.7232 1.4263 1 3814 3344 2209 2212 4192 4192 -0.058180996244800554 APGVQRLRRQ 10 Unmodified _APGVQRLRRQ_ 0 0 0 REV__ENST00000265827.7_1_7:127031641-127032559:-|nuORF REV__ENST00000265827.7_1_7:127031641-127032559:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2716064453125 2 590.854712 1179.69487 0.23761 0.00014039 1.5051 0.00088929 1.7427 0.0010297 591.3583821822104 135.88 0.50096 131.05 130.84 131.34 -4.8307 16 13 2 0 0 0 0.91149 1 26131 26131 3.9444 0.66309 1 1550800 + 3815 20247 2210 2213 4193 4193 0.11221241225553058 APGVSDPYR 9 Unmodified _APGVSDPYR_ 0 0 0 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant;ENSG00000112787|ENST00000680143|FBRSL1 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2396240234375 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 174.09 1 174.09 173.59 174.59 0 0 0 0 0.23508 1 36029 36029 4.756 0.42677 1 3816 2712 2211 2214 4194 4194 -0.015319761420073519 APGVVSINI 9 Unmodified _APGVVSINI_ 0 0 0 REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 434.89385986328125 2 435.258185 868.501818 0.16959 7.3817E-05 -0.13431 -5.8459E-05 0.035285 1.5358E-05 435.2580897268759 34.463 0.83647 32.247 31.951 32.787 -2.2158 75 23 5 0 0 0 0.67345 1 6080 6080 8.5933 0 1 63576000 + 3817 14103 2212 2215 4195 4195 0.062306863857997996 APGVWFFR 8 Unmodified _APGVWFFR_ 0 0 0 nc|ENSG00000134955|Q8TED4-3|SLC37A2;ENST00000526405.5_1_11:124933263-124955028:+|nuORF;ENSG00000134955|ENST00000403796|SLC37A2;nc|ENSG00000134955|Q8TED4-2|SLC37A2 nc|ENSG00000134955|Q8TED4-3|SLC37A2 nc|ENSG00000134955|Q8TED4-3|SLC37A2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25946044921875 2 490.261062 978.507572 NaN NaN NaN NaN NaN NaN NaN 170.8 1 165.92 165.42 166.42 -4.873 0 0 0 0.21486 1 33819 33819 11.114 1.767 1 3818 3887 2213 2216 4196 4196 0.01745829688138656 APGWCSCYRH 10 Unmodified _APGWCSCYRH_ 0 0 0 REV__nc|ENSG00000164088|Q96MI6-1|PPM1M REV__nc|ENSG00000164088|Q96MI6-1|PPM1M MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2740478515625 2 590.24476 1178.47497 NaN NaN NaN NaN NaN NaN NaN 149.51 1 144.32 143.82 144.82 -5.1994 0 0 0 0.22588 1 28962 28962 4.3292 0 1 + 3819 24134 2214 2217 4197 4197 -0.10713068768700396 APGWEENPF 9 Unmodified _APGWEENPF_ 0 0 0 ENST00000353383.5_2_17:17713366-17713792:+|nuORF ENST00000353383.5_2_17:17713366-17713792:+|nuORF ENST00000353383.5_2_17:17713366-17713792:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6979370117188 2 523.732532 1045.45051 NaN NaN NaN NaN NaN NaN NaN 163 1 157.82 157.32 158.32 -5.1878 0 0 0 0.23508 1 31687 31687 5.2307 0 1 3820 8935 2215 2218 4198 4198 -0.07039682378922407 APGWGREPVP 10 Unmodified _APGWGREPVP_ 0 0 0 REV__nc|ENSG00000165861|Q9HBF4-2|ZFYVE1 REV__nc|ENSG00000165861|Q9HBF4-2|ZFYVE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2757568359375 2 533.277441 1064.54033 NaN NaN NaN NaN NaN NaN NaN 165.93 1 160.99 160.49 161.49 -4.9484 0 0 0 0.22583 1 32463 32463 13.906 0.86358 1 + 3821 17803 2216 2219 4199 4199 0.01063992020317528 APGWPEEV 8 Unmodified _APGWPEEV_ 0 0 0 FAM151A|p.R534Gfs*18|1|0.3|ENSG00000162391|chr1:54609426-54609426|G/-|frameshift_variant;ENSG00000162391|ENST00000302250|FAM151A FAM151A|p.R534Gfs*18|1|0.3|ENSG00000162391|chr1:54609426-54609426|G/-|frameshift_variant FAM151A|p.R534Gfs*18|1|0.3|ENSG00000162391|chr1:54609426-54609426|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 885.4180297851562 1 884.414859 883.407583 0.29147 0.00025778 0.11402 0.00010084 0.40548 0.00035861 884.4147815638107 135.87 0.81454 130.98 130.53 131.34 -4.8951 37 22 2 0 0 0 0.69085 1 26153 26153 15.768 0.92995 1 11912000 3822 5328 2217 2220 4200 4200 -0.03878452436333646 APGWSLVLH 9 Unmodified _APGWSLVLH_ 0 0 0 REV__ENST00000401419.7_1_22:37425582-37425828:+|nuORF REV__ENST00000401419.7_1_22:37425582-37425828:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2727355957031 2 490.271627 978.528701 NaN NaN NaN NaN NaN NaN NaN 164.75 1 159.7 159.2 160.2 -5.0446 0 0 0 0.23508 1 32151 32151 8.5933 0.68312 1 + 3823 21359 2218 2221 4201 4201 0.03857794996974917 APGWWLGS 8 Unmodified _APGWWLGS_ 0 0 0 REV__ENST00000331222.5_2_8:1732883-1733240:+|nuORF REV__ENST00000331222.5_2_8:1732883-1733240:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2275085449219 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 90.638 1 86.86 86.36 87.36 -3.7779 0 0 0 0.23366 1 17345 17345 0.68139 0.55853 1 + 3824 20612 2219 2222 4202 4202 -0.023224249912459527 APHLAAASEL 10 Unmodified _APHLAAASEL_ 0 0 0 ENST00000510379.1_1_4:148653256-148653571:+|nuORF ENST00000510379.1_1_4:148653256-148653571:+|nuORF ENST00000510379.1_1_4:148653256-148653571:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2631530761719 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 66.268 1 63.221 62.721 63.721 -3.047 0 0 0 0.22576 1 12837 12837 14.838 2.3067 1 3825 10741 2220 2223 4203 4203 0.023328834091330464 APHLAAASEL 10 Unmodified _APHLAAASEL_ 0 0 0 ENST00000510379.1_1_4:148653256-148653571:+|nuORF ENST00000510379.1_1_4:148653256-148653571:+|nuORF ENST00000510379.1_1_4:148653256-148653571:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26513671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 92.211 1 88.402 87.902 88.902 -3.8083 0 0 0 2.8426 1 17666 17666 1.9275 0 1 3826 10741 2220 2223 4204 4204 0.023328834091330464 APHPSPRAF 9 Unmodified _APHPSPRAF_ 0 0 0 REV__ARHGAP6|p.R89Gfs*123|1|0.1|ENSG00000047648|chrX:11664565-11664565|G/-|frameshift_variant REV__ARHGAP6|p.R89Gfs*123|1|0.1|ENSG00000047648|chrX:11664565-11664565|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2574768066406 2 490.259051 978.503549 NaN NaN NaN NaN NaN NaN NaN 122.71 1 122.71 122.21 123.21 0 0 0 0 0.19451 1 24184 24184 1.2148 0.53344 1 + 3827 13104 2221 2224 4205 4205 0.013437401944202065 APHPSPRAF 9 Unmodified _APHPSPRAF_ 0 0 0 REV__ARHGAP6|p.R89Gfs*123|1|0.1|ENSG00000047648|chrX:11664565-11664565|G/-|frameshift_variant REV__ARHGAP6|p.R89Gfs*123|1|0.1|ENSG00000047648|chrX:11664565-11664565|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25921630859375 2 490.259051 978.503549 NaN NaN NaN NaN NaN NaN NaN 163.99 1 159.2 158.7 159.7 -4.7898 0 0 0 0.23508 1 32733 32733 10.824 2.9138 1 + 3828 13104 2221 2224 4206 4206 0.013437401944202065 APHSSDER 8 Unmodified _APHSSDER_ 0 0 0 REV__nc|ENSG00000108788|Q9UH92|MLX REV__nc|ENSG00000108788|Q9UH92|MLX MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 300.1383056640625 3 300.138629 897.394058 NaN NaN NaN NaN NaN NaN NaN 109.85 1 109.85 109.35 110.35 0 0 0 0 0.21486 1 21602 21602 0.45834 0 1 + 3829 23996 2222 2225 4207 4207 -0.058743102155744964 APHSYVCELQP 11 Unmodified _APHSYVCELQP_ 0 0 0 nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;PKD1|p.A696Rfs*18|1|0.23|ENSG00000008710|chr16:2115389-2115390|-/G|frameshift_variant;ENST00000568591.5_1_16:2156634-2167660:-|nuORF nc|ENSG00000008710|P98161-2|PKD1 nc|ENSG00000008710|P98161-2|PKD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7799682617188 2 622.29243 1242.57031 0.39968 0.00024872 3.9223 0.0024408 4.322 0.0026896 622.7949260691832 133.57 0.14423 128.75 128.63 128.77 -4.8175 5 3 2 0 0 0 0.95337 1 25691 25691 2.9952 0 1 604350 3830 1047 2223 2226 4208 4208 -0.04127437096644826 APHTTEAYQKY 11 Unmodified _APHTTEAYQKY_ 0 0 0 SLC45A1|p.S563T|1|0.32|ENSG00000162426|chr1:8337905-8337905|T/A|missense_variant SLC45A1|p.S563T|1|0.32|ENSG00000162426|chr1:8337905-8337905|T/A|missense_variant SLC45A1|p.S563T|1|0.32|ENSG00000162426|chr1:8337905-8337905|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2344970703125 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 145.08 1 140.41 139.91 140.91 -4.6694 0 0 0 0.2366 1 28752 28752 3.0723 1.1659 1 3831 25685 2224 2227 4209 4209 -0.026887096787959308 APHWWGRRHYL 11 Unmodified _APHWWGRRHYL_ 0 0 0 REV__ENST00000572418.1_1_17:3807220-3819678:-|nuORF REV__ENST00000572418.1_1_17:3807220-3819678:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 493.5911560058594 3 493.589933 1477.74797 NaN NaN NaN NaN NaN NaN NaN 163.89 1 163.89 163.39 164.39 0 0 0 0 0.23698 1 33080 33080 1.4551 0.24029 1 + 3832 23175 2225 2228 4210 4210 0.02820619008207359 APIGKLKL 8 Unmodified _APIGKLKL_ 0 0 0 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 420.31976318359375 2 420.289288 838.564024 -0.1795 -7.5443E-05 0.61748 0.00025952 0.43798 0.00018408 420.2894703976565 83.689 0.62718 80.081 79.762 80.389 -3.6079 30 17 2 0 0 0 0.76552 1 16341 16341 22.453 7.8709 1 1286600 3833 7893 2226 2229 4211 4211 0.1382845752477806 APIQRRKKP 9 Unmodified _APIQRRKKP_ 0 0 0 ENSG00000197265|ENST00000355904|GTF2E2 ENSG00000197265|ENST00000355904|GTF2E2 ENSG00000197265|ENST00000355904|GTF2E2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7685546875 2 547.351274 1092.688 0.59361 0.00032491 -3.1702 -0.0017352 -2.5765 -0.0014103 547.3486811844807 43.851 0.20705 43.851 43.78 43.987 0 6 5 2 0 0 0 0.87888 1 8238 8238 2.0598 0.21551 1 578900 3834 7347 2227 2230 4212 4212 0.14535928344980675 APIRRLRLA 9 Unmodified _APIRRLRLA_ 0 0 0 ENST00000514938.1_1_22:50943733-50944613:-|nuORF;nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2 ENST00000514938.1_1_22:50943733-50944613:-|nuORF ENST00000514938.1_1_22:50943733-50944613:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2849731445312 2 533.353817 1064.69308 NaN NaN NaN NaN NaN NaN NaN 165.29 1 160.5 160 161 -4.7898 0 0 0 0.23508 1 33092 33092 5.2307 0.90143 1 3835 1944 2228 2231 4213 4213 0.16332232207605557 APIYIPLGVH 10 Unmodified _APIYIPLGVH_ 0 0 0 REV__ENSG00000176624|ENST00000406189|MEX3C REV__ENSG00000176624|ENST00000406189|MEX3C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 540.331787109375 2 540.316035 1078.61752 NaN NaN NaN NaN NaN NaN NaN 170.28 1 165.4 164.9 165.9 -4.873 0 0 0 0.22588 1 33687 33687 7.9102 2.1783 1 + 3836 18515 2229 2232 4214 4214 0.08135210236650892 APKARLHR 8 Unmodified _APKARLHR_ 0 0 0 REV__GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant REV__GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.8764953613281 3 316.866515 947.577717 NaN NaN NaN NaN NaN NaN NaN 19.415 1 19.415 18.915 19.915 0 0 0 0 0.2396 1 3172 3172 0 0 1 + 3837 23562 2230 2233 4215 4215 0.10183128076585035 APKDPYDLY 9 Unmodified _APKDPYDLY_ 0 0 0 ENSG00000261949|ENST00000610896|GFY ENSG00000261949|ENST00000610896|GFY ENSG00000261949|ENST00000610896|GFY MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.259521484375 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 91.849 1 87.923 87.423 88.423 -3.9251 0 0 0 0.23508 1 17982 17982 7.9102 0.62092 1 3838 7964 2231 2234 4216 4216 -0.02425956030560883 APKHRSGP 8 Unmodified _APKHRSGP_ 0 0 0 REV__ENSG00000149679|ENST00000279101|CABLES2 REV__ENSG00000149679|ENST00000279101|CABLES2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.23797607421875 2 425.238119 848.461684 0.00636 2.7045E-06 0.28486 0.00012113 0.29122 0.00012384 425.23814973239934 15.663 0.30666 15.663 15.473 15.779 0 12 8 2 0 0 0 0.77935 1 2394 2394 5.2307 0 1 579810 + 3839 17019 2232 2235 4217 4217 0.031391845059033585 APKHRSGP 8 Unmodified _APKHRSGP_ 0 0 0 REV__ENSG00000149679|ENST00000279101|CABLES2 REV__ENSG00000149679|ENST00000279101|CABLES2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 425.238119 848.461684 -0.48128 -0.00020466 0.50858 0.00021627 0.027303 1.161E-05 425.23826196952075 16.833 0.24623 15.617 15.459 15.705 -1.2159 -0.023002 9.526E-05 NaN 5.2307 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 332470 + 3840 17019 2232 2235 0.031391845059033585 APKIVPKV 8 Unmodified _APKIVPKV_ 0 0 0 ENST00000375311.1_1_10:31138210-31139252:-|nuORF;ZNF438|p.N417Kfs*2|1|0.33|ENSG00000183621|chr10:30849154-30849155|-/T|frameshift_variant;nc|ENSG00000183621|Q7Z4V0-2|ZNF438;ENSG00000183621|ENST00000436087|ZNF438 ENST00000375311.1_1_10:31138210-31139252:-|nuORF ENST00000375311.1_1_10:31138210-31139252:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 426.28265380859375 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 26.934 1 25.151 24.651 25.651 -1.7821 0 0 0 0.21486 1 4770 4770 2.8892 2.0956 1 3841 6857 2233 2236 4218 4218 0.13276457524796115 APKKEREEEE 10 Unmodified _APKKEREEEE_ 0 0 0 REV__ENSG00000163528|ENST00000396914|CHCHD4 REV__ENSG00000163528|ENST00000396914|CHCHD4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7566528320312 2 622.809499 1243.60444 NaN NaN NaN NaN NaN NaN NaN 163.08 1 158.29 157.79 158.79 -4.7898 0 0 0 0.22588 1 32485 32485 6.2058 0.47393 1 + 3842 17582 2234 2237 4219 4219 -0.0076131740402161086 APKKLIRYI 9 Unmodified _APKKLIRYI_ 0 0 0 ENSG00000107874|ENST00000369937|CUEDC2;ENST00000465409.1_1_10:104183185-104183703:-|nuORF ENSG00000107874|ENST00000369937|CUEDC2 ENSG00000107874|ENST00000369937|CUEDC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 551.3767700195312 2 551.360776 1100.707 NaN NaN NaN NaN NaN NaN NaN 171.6 1 166.69 166.19 167.19 -4.9149 0 0 0 0.23508 1 33998 33998 4.756 1.7608 1 3843 2446 2235 2238 4220 4220 0.16067464916045537 APKLMKKHI 9 Unmodified _APKLMKKHI_ 0 0 0 REV__nc|ENSG00000109814|O60701-2|UGDH REV__nc|ENSG00000109814|O60701-2|UGDH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2847900390625 2 533.333704 1064.65286 NaN NaN NaN NaN NaN NaN NaN 161.24 1 161.24 160.74 161.74 0 0 0 0 0.23508 1 32384 32384 8.5933 0 1 + 3844 15177 2236 2239 4221 4221 0.12311549492801532 APKLQVHG 8 Unmodified _APKLQVHG_ 0 0 0 ENSG00000158683|ENST00000289672|PKD1L1;PKD1L1|p.R2615Lfs*97|1|0.05|ENSG00000158683|chr7:47803328-47803329|-/TTTATCA|frameshift_variant;PKD1L1|p.L2298Cfs*3|1|0.47|ENSG00000158683|chr7:47821148-47821148|A/-|frameshift_variant;nc|ENSG00000158683|Q8TDX9-2|PKD1L1 ENSG00000158683|ENST00000289672|PKD1L1 ENSG00000158683|ENST00000289672|PKD1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2507019042969 2 425.250695 848.486836 -0.09931 -4.2232E-05 0.63369 0.00026948 0.53438 0.00022724 425.25087954092646 60.953 0.41636 57.729 57.597 58.013 -3.2237 14 11 2 0 0 0 0.7545 1 11448 11448 6.3541 0.59368 1 750560 3845 5177 2237 2240 4222 4222 0.05653239308469438 APKLSALK 8 Unmodified _APKLSALK_ 0 0 0 nc|ENSG00000095564|O14981-2|BTAF1;ENSG00000095564|ENST00000265990|BTAF1 nc|ENSG00000095564|O14981-2|BTAF1 nc|ENSG00000095564|O14981-2|BTAF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.2694396972656 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 51.02 1 48.137 47.637 48.637 -2.8824 0 0 0 0.21486 1 9689 9689 2.8892 0 1 3846 1863 2238 2241 4223 4223 0.10743580628070504 APKMLIDFF 9 Unmodified _APKMLIDFF_ 0 0 0 ENSG00000176299|ENST00000641200|OR4M1 ENSG00000176299|ENST00000641200|OR4M1 ENSG00000176299|ENST00000641200|OR4M1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2701416015625 2 541.291171 1080.56779 -0.6113 -0.00033089 0.61117 0.00033082 -0.00012236 -6.6234E-08 541.291370129473 13.908 0.20736 12.735 12.621 12.828 -1.173 12 5 3 0 0 0 0.67531 1 1821 1821 7.9102 2.6795 1 1377100 3847 6460 2239 2242 4224 4224 0.030727592363518852 APKRKRRWVMR 11 Unmodified _APKRKRRWVMR_ 0 0 0 REV__nc|ENSG00000155324|Q96HH9-2|GRAMD2B REV__nc|ENSG00000155324|Q96HH9-2|GRAMD2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3709106445312 2 742.448788 1482.88302 NaN NaN NaN NaN NaN NaN NaN 164.36 1 164.36 163.86 164.86 0 0 0 0 0.23698 1 33226 33226 1.4819 0.28856 1 + 3848 24107 2240 2243 4225 4225 0.1608977587827667 APKRRTRFLI 10 Unmodified _APKRRTRFLI_ 0 0 0 ENST00000515093.1_1_5:88183386-88184973:-|nuORF ENST00000515093.1_1_5:88183386-88184973:-|nuORF ENST00000515093.1_1_5:88183386-88184973:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 629.4605712890625 2 629.398756 1256.78296 NaN NaN NaN NaN NaN NaN NaN 172.71 1 167.83 167.33 168.33 -4.881 0 0 0 0.22588 1 34299 34299 3.5965 0.60125 1 3849 10783 2241 2244 4226 4226 0.16483861816186618 APKWALFF 8 Unmodified _APKWALFF_ 0 0 0 REV__ENST00000553497.1_1_14:70078473-70082298:+|nuORF REV__ENST00000553497.1_1_14:70078473-70082298:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2734069824219 2 490.273638 978.532724 NaN NaN NaN NaN NaN NaN NaN 173.94 1 169.15 168.65 169.65 -4.7898 0 0 0 0.21486 1 35509 35509 10.183 0 1 + 3850 22962 2242 2245 4227 4227 0.04259884490704735 APLAARTR 8 Unmodified _APLAARTR_ 0 0 0 REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 429.27874755859375 2 428.261594 854.508634 -0.048195 -2.064E-05 0.097159 4.161E-05 0.048964 2.0969E-05 428.2615464911765 148.75 1.0357 144.04 143.61 144.65 -4.7095 82 28 5 0 0 0 8448 1 29526 29526 3.5871 1.8448 1 38143000 + 3851 20631 2243 2246 4228 4228 0.0755604405703707 APLAKPQHT 9 Unmodified _APLAKPQHT_ 0 0 0 REV__nc|ENSG00000138821|Q9C0K1-3|SLC39A8 REV__nc|ENSG00000138821|Q9C0K1-3|SLC39A8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77655029296875 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 174.19 1 169.4 168.9 169.9 -4.7898 0 0 0 0.22962 1 35575 35575 14.838 5.4908 1 + 3852 24066 2244 2247 4229 4229 0.052208935086468955 APLAPRVRRQP 11 Unmodified _APLAPRVRRQP_ 0 0 0 REV__ENST00000546828.6_1_12:98909466-98909845:+|nuORF REV__ENST00000546828.6_1_12:98909466-98909845:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7703247070312 2 630.886013 1259.75747 NaN NaN NaN NaN NaN NaN NaN 165.77 1 165.77 165.27 166.27 0 0 0 0 0.23264 1 33679 33679 6.2058 0.47393 1 + 3853 22898 2245 2248 4230 4230 0.13798387293741143 APLEYHHFFYI 11 Unmodified _APLEYHHFFYI_ 0 0 0 REV__ENSG00000182087|ENST00000356663|TMEM259 REV__ENSG00000182087|ENST00000356663|TMEM259 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 479.5725402832031 3 479.571434 1435.69247 NaN NaN NaN NaN NaN NaN NaN 164.61 1 159.57 159.07 160.07 -5.0446 0 0 0 0.23698 1 32118 32118 0.50596 0 1 + 3854 18753 2246 2249 4231 4231 -0.007946520227505971 APLEYPPPP 9 Unmodified _APLEYPPPP_ 0 0 0 REV__NFE2|p.E221Rfs*13|2|0.25|ENSG00000123405|chr12:54292835-54292835|C/-|frameshift_variant REV__NFE2|p.E221Rfs*13|2|0.25|ENSG00000123405|chr12:54292835-54292835|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2530517578125 2 490.758018 979.501483 0.28895 0.00014181 -0.27239 -0.00013368 0.016569 8.1313E-06 490.75801713953587 123.54 0.1788 118.96 118.89 119.07 -4.5757 6 4 2 0 0 0 0.60698 1 24335 24335 30.225 7.0764 1 592990 + 3855 15728 2247 2250 4232 4232 0.010912666659464776 APLFFPLSLF 10 Unmodified _APLFFPLSLF_ 0 0 0 REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3343505859375 2 576.328611 1150.64267 0.29389 0.00016938 -0.12299 -7.088E-05 0.17091 9.85E-05 576.3298108594043 132.63 0.21017 132.63 132.51 132.72 0 8 5 2 0 0 0 0.68674 1 26223 26223 12.532 1.0368 1 2401900 + 3856 20733 2248 2251 4233 4233 0.07337265039222984 APLISKIFR 9 Unmodified _APLISKIFR_ 0 0 0 tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1 tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1 tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2666015625 2 522.831852 1043.64915 0.19418 0.00010152 -3.9522 -0.0020663 -3.758 -0.0019648 523.3308973360386 140 0.31085 140 139.71 140.02 0 10 8 2 0 0 0 0.85111 1 27846 27846 3.5965 0.31518 1 8100200 3857 25893 2249 2252 4234 4234 0.12907202990618316 APLISKIFR 9 Unmodified _APLISKIFR_ 0 0 0 tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1 tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1 tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2664794921875 2 522.831852 1043.64915 -0.1321 -6.9065E-05 -3.2642 -0.0017066 -3.3963 -0.0017757 523.3319404100703 144.04 0.44708 139.37 139.19 139.64 -4.6694 12 12 2 0 0 0 0.84208 1 28490 28490 7.2892 3.3448 1 8589800 3858 25893 2249 2252 4235 4235 0.12907202990618316 APLKQRSKLY 10 Unmodified _APLKQRSKLY_ 0 0 0 THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|84|3|anti-sense THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|84|3|anti-sense THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|84|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3002319335938 2 602.364047 1202.71354 NaN NaN NaN NaN NaN NaN NaN 136.04 1 131.21 130.71 131.71 -4.8307 0 0 0 0.22588 1 26192 26192 7.9102 0.62092 1 3859 25848 2250 2253 4236 4236 0.1202935807675658 APLKYIYRQ 9 Unmodified _APLKYIYRQ_ 0 0 0 REV__WDR7|p.S280R|1|0.04|ENSG00000091157|chr18:56691338-56691338|T/A|missense_variant REV__WDR7|p.S280R|1|0.04|ENSG00000091157|chr18:56691338-56691338|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3291015625 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 173.92 1 169.03 168.53 169.53 -4.8916 0 0 0 0.23508 1 34599 34599 4.756 0.42677 1 + 3860 25541 2251 2254 4237 4237 0.08057997639662062 APLLFLVGV 9 Unmodified _APLLFLVGV_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.18572998046875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 97.3 1 97.3 96.8 97.8 0 0 0 0 0.23508 1 19067 19067 0.26902 0 1 + 3861 17604 2252 2255 4238 4238 0.1126532432199383 APLLFLVGV 9 Unmodified _APLLFLVGV_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698913574219 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 148.82 1 148.82 148.32 149.32 0 0 0 0 0.23508 1 29786 29786 0.26902 0 1 + 3862 17604 2252 2255 4239 4239 0.1126532432199383 APLLFLVGV 9 Unmodified _APLLFLVGV_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.23736572265625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 149.45 1 149.45 148.95 149.95 0 0 0 0 0.23508 1 29919 29919 0.26902 0 1 + 3863 17604 2252 2255 4240 4240 0.1126532432199383 APLLFLVGV 9 Unmodified _APLLFLVGV_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651611328125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 149.59 1 149.59 149.09 150.09 0 0 0 0 0.23508 1 29950 29950 0.26902 0 1 + 3864 17604 2252 2255 4241 4241 0.1126532432199383 APLLFLVGV 9 Unmodified _APLLFLVGV_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.171875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 153.21 1 148.44 147.94 148.94 -4.7684 0 0 0 0.23508 1 30446 30446 0.26902 0 1 + 3865 17604 2252 2255 4242 4242 0.1126532432199383 APLLFLVGV 9 Unmodified _APLLFLVGV_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2381591796875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 154.64 1 149.35 148.85 149.85 -5.2854 0 0 0 0.23508 1 29987 29987 0.26902 0 1 + 3866 17604 2252 2255 4243 4243 0.1126532432199383 APLLFLVGV 9 Unmodified _APLLFLVGV_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.23095703125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 99.559 1 95.602 95.102 96.102 -3.9564 0 0 0 0.23508 1 19117 19117 0.26902 0 1 + 3867 17604 2252 2255 4244 4244 0.1126532432199383 APLLFLVGV 9 Unmodified _APLLFLVGV_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.17236328125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 153.91 1 148.69 148.19 149.19 -5.2209 0 0 0 0.23508 1 29833 29833 0.26902 0 1 + 3868 17604 2252 2255 4245 4245 0.1126532432199383 APLLFLVGV 9 Unmodified _APLLFLVGV_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2311706542969 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 154.1 1 148.88 148.38 149.38 -5.2209 0 0 0 0.23508 1 29874 29874 0.26902 0 1 + 3869 17604 2252 2255 4246 4246 0.1126532432199383 APLLFLVGV 9 Unmodified _APLLFLVGV_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.221923828125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 154.95 1 149.7 149.2 150.2 -5.2526 0 0 0 0.23508 1 30046 30046 0.26902 0 1 + 3870 17604 2252 2255 4247 4247 0.1126532432199383 APLLRHWEL 9 Unmodified _APLLRHWEL_ 0 0 0 ENSG00000204252|ENST00000229829|HLA-DOA ENSG00000204252|ENST00000229829|HLA-DOA ENSG00000204252|ENST00000229829|HLA-DOA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 567.6953125 2 567.824558 1133.63456 0.24846 0.00014108 3.3426 0.001898 3.5911 0.0020391 567.8281663954527 136.65 0.31528 131.82 131.66 131.98 -4.8307 10 8 2 0 0 0 0.8319 1 26324 26324 4.3292 2.8473 1 1457500 3871 7567 2253 2256 4248 4248 0.07309130842440936 APLLVMFF 8 Unmodified _APLLVMFF_ 0 0 0 REV__nc|ENSG00000293392|Q8IVK1-2|GLYCAM1 REV__nc|ENSG00000293392|Q8IVK1-2|GLYCAM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1793212890625 3 313.178709 936.514297 NaN NaN NaN NaN NaN NaN NaN 59.294 1 56.07 55.57 56.57 -3.2237 0 0 0 0.21486 1 11074 11074 4.3292 0 1 + 3872 24329 2254 2257 4249 4249 0.04350006524487071 APLNISHDTL 10 Unmodified _APLNISHDTL_ 0 0 0 MCPH1|p.R218H|1|0.48|ENSG00000147316|chr8:6442139-6442139|G/A|missense_variant MCPH1|p.R218H|1|0.48|ENSG00000147316|chr8:6442139-6442139|G/A|missense_variant MCPH1|p.R218H|1|0.48|ENSG00000147316|chr8:6442139-6442139|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2703247070312 2 540.787838 1079.56112 0.20396 0.0001103 0.48284 0.00026111 0.6868 0.00037141 540.7879726242519 135 0.46002 130.36 130.06 130.52 -4.6399 21 12 2 0 0 0 0.42569 1 26615 26615 29.082 2.8134 1 3707200 3873 12119 2255 2258 4250 4250 0.024525376093151863 APLNVVPLRC 10 Unmodified _APLNVVPLRC_ 0 0 0 KDM4B|p.P511Lfs*8|1|0.14|ENSG00000127663|chr19:5131288-5131288|C/-|frameshift_variant KDM4B|p.P511Lfs*8|1|0.14|ENSG00000127663|chr19:5131288-5131288|C/-|frameshift_variant KDM4B|p.P511Lfs*8|1|0.14|ENSG00000127663|chr19:5131288-5131288|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2807006835938 2 541.312969 1080.61138 NaN NaN NaN NaN NaN NaN NaN 153.69 1 153.69 153.19 154.19 0 0 0 0 0.22576 1 30797 30797 14.838 1.3304 1 3874 11990 2256 2259 4251 4251 0.07430368733480464 APLPQLLRQAP 11 Unmodified _APLPQLLRQAP_ 0 0 0 REV__ENST00000555993.6_1_14:71267787-71275967:-|nuORF REV__ENST00000555993.6_1_14:71267787-71275967:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.293701171875 2 602.364047 1202.71354 NaN NaN NaN NaN NaN NaN NaN 172.33 1 167.54 167.04 168.04 -4.7898 0 0 0 0.224 1 35102 35102 13.042 5.4335 1 + 3875 22989 2257 2260 4252 4252 0.1202935807675658 APLPREVGLA 10 Unmodified _APLPREVGLA_ 0 0 0 REV__ENST00000261497.8_1_17:20905926-20906025:-|nuORF REV__ENST00000261497.8_1_17:20905926-20906025:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.20147705078125 3 341.537953 1021.59203 -0.43806 -0.00014961 0.13103 4.475E-05 -0.30703 -0.00010486 341.53802667489884 51.306 1.1763 48.424 47.927 49.103 -2.8824 116 33 5 0 0 0 0.47611 1 9761 9761 6.6304 0 1 207850000 + 3876 20183 2258 2261 4253 4253 0.08209735714240196 APLPTEEEKK 10 Unmodified _APLPTEEEKK_ 0 0 0 nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;ENSG00000091428|ENST00000397081|RAPGEF4 nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2086486816406 3 381.208161 1140.60265 0.15102 5.7569E-05 1.0071 0.00038393 1.1582 0.0004415 381.20856166406134 35.517 0.55087 33.265 33.09 33.641 -2.2527 35 15 3 0 0 0 0.51803 1 6292 6292 0.043787 0.017581 1 2252400 3877 1809 2259 2262 4254 4254 0.037976735780148374 APLQLGSPVAK 11 Unmodified _APLQLGSPVAK_ 0 0 0 REV__ENST00000279392.7_1_16:30007232-30007604:-|nuORF REV__ENST00000279392.7_1_16:30007232-30007604:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2625122070312 2 540.824224 1079.63389 NaN NaN NaN NaN NaN NaN NaN 165.56 1 165.56 165.06 166.06 0 0 0 0 0.21129 1 33616 33616 16.149 0.30192 1 + 3878 20301 2260 2263 4255 4255 0.09726291402762399 APLQLQVNY 9 Unmodified _APLQLQVNY_ 0 0 0 REV__nc|ENSG00000087303|Q14112-2|NID2 REV__nc|ENSG00000087303|Q14112-2|NID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6898193359375 2 523.287474 1044.5604 0.79355 0.00041526 -0.50901 -0.00026636 0.28454 0.0001489 523.287303007732 105.61 0.69331 101.51 101.16 101.85 -4.0913 34 19 2 0 0 0 0.54354 1 20284 20284 16.942 0.79319 1 2894500 + 3879 14502 2261 2264 4256 4256 0.039897429602888224 APLSSDRPS 9 Unmodified _APLSSDRPS_ 0 0 0 REV__ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant REV__ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2400207519531 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 59.444 1 56.533 56.033 57.033 -2.9105 0 0 0 0.1924 1 11429 11429 24.674 2.9272 1 + 3880 14280 2262 2265 4257 4257 -0.005682800046088232 APLSSDRPS 9 Unmodified _APLSSDRPS_ 0 0 0 REV__ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant REV__ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2403869628906 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 59.721 1 56.498 55.998 56.998 -3.2237 0 0 0 0.1924 1 11162 11162 24.674 2.9272 1 + 3881 14280 2262 2265 4258 4258 -0.005682800046088232 APMLKRLCF 9 Unmodified _APMLKRLCF_ 0 0 0 REV__ENSG00000124201|ENST00000396105|ZNFX1 REV__ENSG00000124201|ENST00000396105|ZNFX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2022399902344 3 360.201519 1077.58273 NaN NaN NaN NaN NaN NaN NaN 134.87 1 134.87 134.37 135.37 0 0 0 0 0.23508 1 26705 26705 1.1933 0.41681 1 + 3882 15762 2263 2266 4259 4259 0.04703927832701993 APMLLFASL 9 Unmodified _APMLLFASL_ 0 0 0 REV__ENST00000552793.5_1_12:49398390-49398771:-|nuORF REV__ENST00000552793.5_1_12:49398390-49398771:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7740173339844 2 481.772614 961.530675 NaN NaN NaN NaN NaN NaN NaN 151.3 1 151.3 150.8 151.8 0 0 0 0 0.23508 1 30297 30297 8.5933 0 1 + 3883 22950 2264 2267 4260 4260 0.048370876905892146 APMRQELSAP 10 Unmodified _APMRQELSAP_ 0 0 0 REV__ENST00000470483.1_1_10:127483626-127483773:-|nuORF REV__ENST00000470483.1_1_10:127483626-127483773:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.9315185546875 3 367.190336 1098.54918 -0.90266 -0.00033145 1.1521 0.00042302 0.2494 9.1577E-05 367.1908136297851 14.358 0.27595 13.244 13.123 13.399 -1.1142 10 7 2 0 0 0 0.91149 1 2146 2146 1.9064 0.71303 1 281990 + 3884 22032 2265 2268 4261 4261 0.0038459759448414843 APPAHRRP 8 Unmodified _APPAHRRP_ 0 0 0 ENST00000493916.1_1_1:38018188-38019866:-|nuORF;ENSG00000163877|ENST00000296215|SNIP1 ENST00000493916.1_1_1:38018188-38019866:-|nuORF ENST00000493916.1_1_1:38018188-38019866:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 451.2607727050781 2 451.259385 900.504218 NaN NaN NaN NaN NaN NaN NaN 161.04 1 161.04 160.54 161.54 0 0 0 0 0.21486 1 32341 32341 11.114 0.93107 1 3885 5476 2266 2269 4262 4262 0.04998579634127509 APPAPNGPDKM 11 Unmodified _APPAPNGPDKM_ 0 0 0 nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3 nc|ENSG00000107864|Q8NE35-2|CPEB3 nc|ENSG00000107864|Q8NE35-2|CPEB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7683715820312 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 170.04 1 165.11 164.61 165.61 -4.9295 0 0 0 0.20277 1 33607 33607 18.146 4.2403 1 3886 2444 2267 2270 4263 4263 -0.020390912968423436 APPARRSLHF 10 Unmodified _APPARRSLHF_ 0 0 0 ENST00000527078.5_1_8:145582541-145582890:+|nuORF ENST00000527078.5_1_8:145582541-145582890:+|nuORF ENST00000527078.5_1_8:145582541-145582890:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3358154296875 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 140.82 1 140.82 140.32 141.32 0 0 0 0 0.22588 1 28044 28044 12.532 1.732 1 3887 10923 2268 2271 4264 4264 0.06666764931219404 APPCSCCG 8 Unmodified _APPCSCCG_ 0 0 0 IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 368.8709411621094 2 369.124402 736.234252 NaN NaN NaN NaN NaN NaN NaN 61.372 1 58.411 57.911 58.911 -2.9614 0 0 0 0.23711 1 11829 11829 0.063987 0.055711 1 3888 11936 2269 2272 4265 4265 -0.14441601080272903 APPEAPKSLGV 11 Unmodified _APPEAPKSLGV_ 0 0 0 REV__ENSG00000237330|ENST00000453464|RNF223 REV__ENSG00000237330|ENST00000453464|RNF223 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2802124023438 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 152.71 1 147.95 147.45 148.45 -4.7589 0 0 0 0.21688 1 30341 30341 14.838 0 1 + 3889 19769 2270 2273 4266 4266 0.056900121317767116 APPEEEEGEEE 11 Unmodified _APPEEEEGEEE_ 0 0 0 REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.77294921875 2 622.743687 1243.47282 NaN NaN NaN NaN NaN NaN NaN 146.87 1 141.87 141.37 142.37 -5 0 0 0 0.23264 1 28424 28424 6.2058 2.6093 1 + 3890 14073 2271 2274 4267 4267 -0.13917592282427904 APPKCAWF 8 Unmodified _APPKCAWF_ 0 0 0 REV__ENST00000257215.9_1_11:61512188-61512554:+|nuORF REV__ENST00000257215.9_1_11:61512188-61512554:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.22833251953125 2 460.228374 918.442194 NaN NaN NaN NaN NaN NaN NaN 163.69 1 163.69 163.19 164.19 0 0 0 0 0.21486 1 33016 33016 11.114 0 1 + 3891 20138 2272 2275 4268 4268 -0.02028907829230775 APPLPAWPLRS 11 Unmodified _APPLPAWPLRS_ 0 0 0 ENST00000372458.7_1_1:43831285-43833672:-|nuORF ENST00000372458.7_1_1:43831285-43833672:-|nuORF ENST00000372458.7_1_1:43831285-43833672:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2909545898438 2 602.84549 1203.67643 0.39457 0.00023787 -0.73122 -0.00044081 -0.33665 -0.00020295 603.344843977739 147.37 0.24232 147.37 147.26 147.5 0 8 6 2 0 0 0 0.91597 1 29486 29486 7.1017 0 1 3341800 3892 9180 2273 2276 4269 4269 0.08273686530969826 APPPPNSL 8 Unmodified _APPPPNSL_ 0 0 0 ENST00000269919.10_1_19:18480032-18480299:+|nuORF ENST00000269919.10_1_19:18480032-18480299:+|nuORF ENST00000269919.10_1_19:18480032-18480299:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 397.71173095703125 2 396.716153 791.417754 -0.20279 -8.045E-05 0.20261 8.038E-05 -0.0001743 -6.9146E-08 396.71614261070744 45.261 0.81675 42.471 42.095 42.912 -2.79 61 22 4 0 0 0 8448 1 8581 8581 6.2058 0 1 13473000 3893 8397 2274 2277 4270 4270 0.013701552889074264 APPPQVEKKGQ 11 Unmodified _APPPQVEKKGQ_ 0 0 0 nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98 nc|ENSG00000110713|P52948-4|NUP98 nc|ENSG00000110713|P52948-4|NUP98 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.0888061523438 2 589.830037 1177.64552 0.6014 0.00035472 3.9168 0.0023102 4.5182 0.002665 589.8330581395871 170.51 0.17923 165.59 165.47 165.65 -4.9149 6 4 2 0 0 0 0.68099 1 33707 33707 13.042 0.51092 1 7641600 3894 12282 2275 2278 4271 4271 0.0638048842608896 APPSLAEPLPC 11 Unmodified _APPSLAEPLPC_ 0 0 0 REV__TET3|p.P728Lfs*38|1|0.25|ENSG00000187605|chr2:74048095-74048095|C/-|frameshift_variant REV__TET3|p.P728Lfs*38|1|0.25|ENSG00000187605|chr2:74048095-74048095|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7757568359375 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 161.73 1 161.73 161.23 162.23 0 0 0 0 0.22085 1 32485 32485 13.906 3.0821 1 + 3895 19099 2276 2279 4272 4272 0.004749635057351043 APPSPVRCRV 10 Unmodified _APPSPVRCRV_ 0 0 0 ENST00000478619.1_1_3:50374315-50374750:-|nuORF ENST00000478619.1_1_3:50374315-50374750:-|nuORF ENST00000478619.1_1_3:50374315-50374750:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.274658203125 2 541.300393 1080.58623 NaN NaN NaN NaN NaN NaN NaN 128.38 1 128.38 127.88 128.88 0 0 0 0 0.22588 1 25355 25355 13.042 3.6593 1 3896 10323 2277 2280 4273 4273 0.04916313930903016 APPTEPRTLP 10 Unmodified _APPTEPRTLP_ 0 0 0 REV__nc|ENSG00000096063|Q96SB4-3|SRPK1 REV__nc|ENSG00000096063|Q96SB4-3|SRPK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.200927734375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 56.847 1 56.847 56.347 57.347 0 0 0 0 0.22588 1 10859 10859 4.1895 0.31317 1 + 3897 23966 2278 2281 4274 4274 0.0461712798901317 APPTEPRTLP 10 Unmodified _APPTEPRTLP_ 0 0 0 REV__nc|ENSG00000096063|Q96SB4-3|SRPK1 REV__nc|ENSG00000096063|Q96SB4-3|SRPK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20184326171875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 59.462 1 56.545 56.045 57.045 -2.9163 0 0 0 0.22588 1 11433 11433 7.1017 0.90987 1 + 3898 23966 2278 2281 4275 4275 0.0461712798901317 APPVPPKIIV 10 Unmodified _APPVPPKIIV_ 0 0 0 REV__sp|Q6SW29|VIE2_HCMVMViraltranscriptionfactorIE2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL122PE=3SV=1 REV__sp|Q6SW29|VIE2_HCMVMViraltranscriptionfactorIE2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL122PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.23907470703125 3 344.226827 1029.65865 NaN NaN NaN NaN NaN NaN NaN 42.715 1 42.715 42.215 43.215 0 0 0 0 0.22588 1 7994 7994 0.77653 0 1 + 3899 24719 2279 2282 4276 4276 0.14500971276129349 APQCQAPLA 9 Unmodified _APQCQAPLA_ 0 0 0 ENST00000544781.1_11:69066742-69066826:+|nuORF ENST00000544781.1_11:69066742-69066826:+|nuORF ENST00000544781.1_11:69066742-69066826:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 300.15216064453125 3 300.153222 897.437837 NaN NaN NaN NaN NaN NaN NaN 114.01 1 109.53 109.03 110.03 -4.4726 0 0 0 0.23508 1 22465 22465 2.9952 0 1 3900 11113 2280 2283 4277 4277 -0.014984170427965182 APQCQAPLA 9 Unmodified _APQCQAPLA_ 0 0 0 ENST00000544781.1_11:69066742-69066826:+|nuORF ENST00000544781.1_11:69066742-69066826:+|nuORF ENST00000544781.1_11:69066742-69066826:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 300.15203857421875 3 300.153222 897.437837 NaN NaN NaN NaN NaN NaN NaN 114.15 1 109.6 109.1 110.1 -4.555 0 0 0 0.23508 1 21916 21916 2.9952 0 1 3901 11113 2280 2283 4278 4278 -0.014984170427965182 APQERLRYQWH 11 Unmodified _APQERLRYQWH_ 0 0 0 REV__ABCB6|p.G319Wfs*115|1|0.24|ENSG00000115657|chr2:219216380-219216381|-/C|frameshift_variant REV__ABCB6|p.G319Wfs*115|1|0.24|ENSG00000115657|chr2:219216380-219216381|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3837890625 2 742.381291 1482.74803 NaN NaN NaN NaN NaN NaN NaN 165.6 1 160.81 160.31 161.31 -4.7898 0 0 0 0.23634 1 33179 33179 3.2813 0 1 + 3902 12897 2281 2284 4279 4279 0.025965742175458217 APQQHHSHFR 10 Unmodified _APQQHHSHFR_ 0 0 0 REV__ENST00000453184.2_1_2:90007722-90008108:+|nuORF REV__ENST00000453184.2_1_2:90007722-90008108:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7557983398438 2 622.80522 1243.59589 NaN NaN NaN NaN NaN NaN NaN 123.8 1 119.07 118.57 119.57 -4.731 0 0 0 0.22588 1 23778 23778 6.2058 0.47393 1 + 3903 21826 2282 2285 4280 4280 -0.016167817393579753 APRAMEGEL 9 Unmodified _APRAMEGEL_ 0 0 0 ENSG00000282936|ENST00000634965|unknown ENSG00000282936|ENST00000634965|unknown ENSG00000282936|ENST00000634965|unknown MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.211669921875 3 325.163898 972.469866 NaN NaN NaN NaN NaN NaN NaN 124.38 1 119.8 119.3 120.3 -4.5757 0 0 0 0.23508 1 24526 24526 2.4985 0 1 3904 8051 2283 2286 4281 4281 -0.017470493596420056 APRKWRHEQYI 11 Unmodified _APRKWRHEQYI_ 0 0 0 REV__ENST00000356648.5_1_1:153949181-153949451:-|nuORF REV__ENST00000356648.5_1_1:153949181-153949451:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4009399414062 2 742.399484 1482.78442 NaN NaN NaN NaN NaN NaN NaN 151.6 1 146.36 145.86 146.86 -5.2365 0 0 0 0.23634 1 29384 29384 3.2813 0.99853 1 + 3905 20817 2284 2287 4282 4282 0.06233451114280797 APRLLLRLHR 10 Unmodified _APRLLLRLHR_ 0 0 0 REV__ENST00000376962.9_1_9:74978504-74980043:-|nuORF REV__ENST00000376962.9_1_9:74978504-74980043:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.759521484375 2 622.906748 1243.79894 NaN NaN NaN NaN NaN NaN NaN 110.65 1 106.23 105.73 106.73 -4.4231 0 0 0 0.22588 1 21802 21802 1.8442 1.2427 1 + 3906 21083 2285 2288 4283 4283 0.18679568053062212 APRLLLRLL 9 Unmodified _APRLLLRLL_ 0 0 0 nc|ENSG00000162129|Q9H078-3|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;ENST00000543042.5_1_11:72091398-72145518:-|nuORF;ENST00000445069.4_1_11:72065347-72145518:-|nuORF;CLPB|p.L339Wfs*5|1|0.11|ENSG00000162129|chr11:72317169-72317169|G/-|frameshift_variant nc|ENSG00000162129|Q9H078-3|CLPB nc|ENSG00000162129|Q9H078-3|CLPB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2847900390625 2 532.868769 1063.72298 0.10146 5.4066E-05 -3.5465 -0.0018898 -3.4451 -0.0018358 532.8679865754658 161.24 0.17468 161.24 161.14 161.31 0 6 4 2 0 0 0 0.87788 1 32384 32384 5.2307 0 1 1246900 3907 5315 2286 2289 4284 4284 0.19367171152930496 APRLLQLY 8 Unmodified _APRLLQLY_ 0 0 0 HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|14|3|sense HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|14|3|sense HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|14|3|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.1999206542969 3 325.19916 972.575651 NaN NaN NaN NaN NaN NaN NaN 140.06 1 135.42 134.92 135.92 -4.6439 0 0 0 0.21486 1 27653 27653 1.6526 0.58116 1 3908 11891 2287 2290 4285 4285 0.0882665454812468 APRLPADYY 9 Unmodified _APRLPADYY_ 0 0 0 CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant;nc|ENSG00000188596|Q96N23-2|CFAP54;ENSG00000188596|ENST00000524981|CFAP54;ENST00000554621.1_1_12:96883387-96894780:+|nuORF CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.0865173339844 3 355.850308 1064.5291 -0.42229 -0.00015027 0.24057 8.5606E-05 -0.18172 -6.4665E-05 355.8502890850543 50.951 0.92218 48.068 47.571 48.493 -2.8824 41 21 3 0 0 0 0.88211 1 9711 9711 1.1933 0 1 1799200 3909 502 2288 2291 4286 4286 -0.0005883007381726202 APRLRALLR 9 Unmodified _APRLRALLR_ 0 0 0 ENST00000397110.6_1_22:37576398-37578231:-|nuORF ENST00000397110.6_1_22:37576398-37578231:-|nuORF ENST00000397110.6_1_22:37576398-37578231:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 356.0869445800781 3 355.90497 1064.69308 -0.2145 -7.6343E-05 -0.11282 -4.0153E-05 -0.32732 -0.0001165 355.90495978546187 52.642 0.63885 52.642 52.182 52.82 0 31 17 3 0 0 0 0.88413 1 9945 9945 0 0 1 4751000 3910 9457 2289 2292 4287 4287 0.1633223220758282 APRNVAGTK 9 Unmodified _APRNVAGTK_ 0 0 0 ENST00000337304.2_1_22:39916921-39917209:+|nuORF ENST00000337304.2_1_22:39916921-39917209:+|nuORF ENST00000337304.2_1_22:39916921-39917209:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.1795349121094 3 305.178648 912.514114 NaN NaN NaN NaN NaN NaN NaN 69.047 1 69.047 68.547 69.547 0 0 0 0 0.23508 1 13360 13360 0.96228 0 1 3911 8815 2290 2293 4288 4288 0.05435722848858404 APRPRHHES 9 Unmodified _APRPRHHES_ 0 0 0 ENST00000372764.3_1_10:75670961-75671806:+|nuORF ENST00000372764.3_1_10:75670961-75671806:+|nuORF ENST00000372764.3_1_10:75670961-75671806:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7787475585938 2 543.781213 1085.54787 NaN NaN NaN NaN NaN NaN NaN 151.54 1 151.54 151.04 152.04 0 0 0 0 0.23508 1 30348 30348 7.2892 0.56607 1 3912 9186 2291 2294 4289 4289 0.00852144340592531 APRPVHDLPRS 11 Unmodified _APRPVHDLPRS_ 0 0 0 REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7628173828125 2 622.846553 1243.67855 NaN NaN NaN NaN NaN NaN NaN 147.74 1 143.03 142.53 143.53 -4.7095 0 0 0 0.21513 1 29324 29324 15.248 1.3424 1 + 3913 22244 2292 2295 4290 4290 0.06646115268790709 APRRPGPASH 10 Unmodified _APRRPGPASH_ 0 0 0 REV__nc|ENSG00000179168|Q86UU5-2|GGN REV__nc|ENSG00000179168|Q86UU5-2|GGN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6975708007812 2 523.286131 1044.55771 -0.14411 -7.5411E-05 -1.6444 -0.00086049 -1.7885 -0.0009359 523.7873603140381 140.55 0.21379 135.9 135.84 136.05 -4.6493 9 5 2 0 0 0 0.83242 1 27741 27741 14.838 4.6549 1 1534400 + 3914 18645 2293 2296 4291 4291 0.037213323459809544 APRRPGRRGP 10 Unmodified _APRRPGRRGP_ 0 0 0 REV__ENST00000432853.1_1_2:132592224-132593771:-|nuORF REV__ENST00000432853.1_1_2:132592224-132593771:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 560.4595947265625 2 560.333947 1118.65334 NaN NaN NaN NaN NaN NaN NaN 167.24 1 162.3 161.8 162.8 -4.948 0 0 0 2.8426 1 32880 32880 12.228 10.485 1 + 3915 21636 2294 2297 4292 4292 0.09876105256898882 APRRPWPQVP 10 Unmodified _APRRPWPQVP_ 0 0 0 ENST00000260743.9_1_10:105210978-105212064:-|nuORF;ENST00000369788.7_1_10:105209823-105212064:-|nuORF ENST00000260743.9_1_10:105210978-105212064:-|nuORF ENST00000260743.9_1_10:105210978-105212064:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2933959960938 2 602.340907 1202.66726 NaN NaN NaN NaN NaN NaN NaN 171.3 1 171.3 170.8 171.8 0 0 0 0 0.22588 1 35280 35280 10.824 0.024421 1 3916 8287 2295 2298 4293 4293 0.07403337965297396 APRRRRRRRKR 11 Unmodified _APRRRRRRRKR_ 0 0 0 PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2813110351562 3 522.008708 1563.00429 0.2062 0.00010764 -0.67397 -0.00035182 -0.46777 -0.00024418 522.3418666793825 141.5 0.13809 141.5 141.4 141.54 0 5 3 2 0 0 0 0.96227 1 28170 28170 0 0 1 2292400 3917 12835 2296 2299 4294 4294 0.24531159355842647 APRRRRWRRRR 11 Unmodified _APRRRRWRRRR_ 0 0 0 REV__ENST00000556735.1_1_14:51134724-51134856:-|nuORF REV__ENST00000556735.1_1_14:51134724-51134856:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.361328125 2 811.501598 1620.98864 NaN NaN NaN NaN NaN NaN NaN 167.52 1 162.62 162.12 163.12 -4.8916 0 0 0 0.22632 1 32957 32957 0.0072825 0.0072825 1 + 3918 23004 2297 2300 4295 4295 0.20298872838770876 APRRRRWRRRR 11 Unmodified _APRRRRWRRRR_ 0 0 0 REV__ENST00000556735.1_1_14:51134724-51134856:-|nuORF REV__ENST00000556735.1_1_14:51134724-51134856:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.361328125 2 811.501598 1620.98864 NaN NaN NaN NaN NaN NaN NaN 167.53 1 162.64 162.14 163.14 -4.8916 0 0 0 0.23698 1 32961 32961 0 0 1 + 3919 23004 2297 2300 4296 4296 0.20298872838770876 APRRVHLFV 9 Unmodified _APRRVHLFV_ 0 0 0 nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8-2|HELZ2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7742919921875 2 547.832717 1093.65088 NaN NaN NaN NaN NaN NaN NaN 163.93 1 163.93 163.43 164.43 0 0 0 0 0.23508 1 33091 33091 8.5933 1.304 1 3920 3619 2298 2301 4297 4297 0.10780256799216659 APRVQHHPPG 10 Unmodified _APRVQHHPPG_ 0 0 0 REV__SLC1A6|p.M377Hfs*66|1|0.13|ENSG00000105143|chr19:14956517-14956518|-/C|frameshift_variant REV__SLC1A6|p.M377Hfs*66|1|0.13|ENSG00000105143|chr19:14956517-14956518|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7685546875 2 548.293956 1094.57336 0.59446 0.00032594 -1.9086 -0.0010465 -1.3142 -0.00072055 548.2929543915516 43.965 0.71886 43.965 43.569 44.288 0 25 20 2 0 0 0 0.86261 1 8238 8238 6.7232 0 1 934720 + 3921 24627 2299 2302 4298 4298 0.02985618863021955 APSAEANQKK 10 Unmodified _APSAEANQKK_ 0 0 0 ACTRT2|p.D336Tfs*16|1|0.26|ENSG00000169717|chr1:3022686-3022686|C/-|frameshift_variant;ACTRT2|p.D336Rfs*18|1|0.45|ENSG00000169717|chr1:3022685-3022686|-/C|frameshift_variant;ENSG00000169717|ENST00000378404|ACTRT2 ACTRT2|p.D336Tfs*16|1|0.26|ENSG00000169717|chr1:3022686-3022686|C/-|frameshift_variant ACTRT2|p.D336Tfs*16|1|0.26|ENSG00000169717|chr1:3022686-3022686|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2789916992188 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 125.46 1 120.81 120.31 121.31 -4.6495 0 0 0 0.22588 1 24138 24138 11.495 0.6952 1 3922 47 2300 2303 4299 4299 0.021153669495106442 APSEHVFTR 9 Unmodified _APSEHVFTR_ 0 0 0 REV__ENSG00000155957|ENST00000358230|TMBIM4 REV__ENSG00000155957|ENST00000358230|TMBIM4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2817993164062 2 522.267073 1042.51959 0.27545 0.00014386 -1.579 -0.00082468 -1.3036 -0.00068082 522.2676263057068 135.92 0.14432 131.09 131.02 131.16 -4.8307 5 3 2 0 0 0 0.66537 1 26162 26162 8.5933 0.68312 1 560540 + 3923 17233 2301 2304 4300 4300 3.401640651645721E-05 APSFMLLFR 9 Unmodified _APSFMLLFR_ 0 0 0 ENST00000540534.5_1_20:62272519-62272642:-|nuORF ENST00000540534.5_1_20:62272519-62272642:-|nuORF ENST00000540534.5_1_20:62272519-62272642:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2642822265625 2 541.296788 1080.57902 NaN NaN NaN NaN NaN NaN NaN 154.17 1 149.4 148.9 149.9 -4.7684 0 0 0 0.22621 1 30642 30642 15.847 1.0089 1 3924 11071 2302 2305 4301 4301 0.041955813305094125 APSGPDVSRIY 11 Unmodified _APSGPDVSRIY_ 0 0 0 REV__ENST00000564033.1_1_16:2086312-2087982:+|nuORF REV__ENST00000564033.1_1_16:2086312-2087982:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7214050292969 3 387.868139 1160.58259 -0.0091412 -3.5456E-06 0.11492 4.4573E-05 0.10578 4.1027E-05 387.8682284170773 46.887 0.34629 43.945 43.754 44.1 -2.9421 11 9 2 0 0 0 0.79645 1 8516 8516 4.1166 0.2403 1 634850 + 3925 14180 2303 2306 4302 4302 0.00871922638043543 APSGQLGSSL 10 Unmodified _APSGQLGSSL_ 0 0 0 REV__GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant REV__GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23321533203125 2 458.740357 915.46616 0.31163 0.00014296 0.052355 2.4018E-05 0.36398 0.00016697 458.7402847932339 35.481 0.52591 33.204 32.964 33.49 -2.2766 24 14 2 0 0 0 0.79872 1 6296 6296 13.906 5.7505 1 3348800 + 3926 18628 2304 2307 4303 4303 0.005046041381433497 APSGVAGLEE 10 Unmodified _APSGVAGLEE_ 0 0 0 sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1;sp|P16848|UL31_HCMVAProteinUL31OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL31PE=1SV=2 sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1 sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25244140625 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 52.558 1 49.471 48.971 49.971 -3.0876 0 0 0 2.8426 1 9666 9666 0.84494 0.72208 1 3927 25763 2305 2308 4304 4304 -0.016911020987663505 APSHPPFRA 9 Unmodified _APSHPPFRA_ 0 0 0 REV__ENST00000530142.5_1_8:145581065-145582036:-|nuORF REV__ENST00000530142.5_1_8:145581065-145582036:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2574157714844 2 490.259051 978.503549 NaN NaN NaN NaN NaN NaN NaN 162.71 1 162.71 162.21 163.21 0 0 0 0 0.19684 1 32734 32734 0.12781 0 1 + 3928 22751 2306 2309 4305 4305 0.013437401944202065 APSHPPFRA 9 Unmodified _APSHPPFRA_ 0 0 0 REV__ENST00000530142.5_1_8:145581065-145582036:-|nuORF REV__ENST00000530142.5_1_8:145581065-145582036:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2575988769531 2 490.259051 978.503549 NaN NaN NaN NaN NaN NaN NaN 169.93 1 169.93 169.43 170.43 0 0 0 0 0.19451 1 34905 34905 0.12781 0 1 + 3929 22751 2306 2309 4306 4306 0.013437401944202065 APSHPPFRA 9 Unmodified _APSHPPFRA_ 0 0 0 REV__ENST00000530142.5_1_8:145581065-145582036:-|nuORF REV__ENST00000530142.5_1_8:145581065-145582036:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25738525390625 2 490.259051 978.503549 NaN NaN NaN NaN NaN NaN NaN 156.42 1 151.63 151.13 152.13 -4.7885 0 0 0 0.19646 1 31103 31103 0.40827 0 1 + 3930 22751 2306 2309 4307 4307 0.013437401944202065 APSIIVNKPLQ 11 Unmodified _APSIIVNKPLQ_ 0 0 0 ENST00000484400.5_1_10:129046280-129142589:+|nuORF ENST00000484400.5_1_10:129046280-129142589:+|nuORF ENST00000484400.5_1_10:129046280-129142589:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2617797851562 2 590.358431 1178.70231 NaN NaN NaN NaN NaN NaN NaN 15.969 1 14.615 14.115 15.115 -1.3534 0 0 0 0.23698 1 2237 2237 1.3295 0 1 3931 10430 2307 2310 4308 4308 0.12010535982608417 APSLCFVH 8 Unmodified _APSLCFVH_ 0 0 0 REV__ENST00000491118.1_1_10:70138969-70141006:-|nuORF REV__ENST00000491118.1_1_10:70138969-70141006:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2158508300781 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 120.18 1 115.71 115.21 116.21 -4.467 0 0 0 0.21323 1 23137 23137 14.582 2.0501 1 + 3932 22310 2308 2311 4309 4309 -0.019854982088986617 APSNLNRIV 9 Unmodified _APSNLNRIV_ 0 0 0 REV__PIGG|p.R157Efs*2|1|0.47|ENSG00000174227|chr4:505822-505822|A/-|frameshift_variant REV__PIGG|p.R157Efs*2|1|0.47|ENSG00000174227|chr4:505822-505822|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 492.2861328125 2 492.285266 982.555979 NaN NaN NaN NaN NaN NaN NaN 140.85 1 136.2 135.7 136.7 -4.6493 0 0 0 0.18489 1 27813 27813 19.626 3.3514 1 + 3933 18401 2309 2312 4310 4310 0.06400278537364557 APSPKNSFN 9 Unmodified _APSPKNSFN_ 0 0 0 INPPL1|p.P976S|1|0.52|ENSG00000165458|chr11:72237170-72237170|C/T|missense_variant INPPL1|p.P976S|1|0.52|ENSG00000165458|chr11:72237170-72237170|C/T|missense_variant INPPL1|p.P976S|1|0.52|ENSG00000165458|chr11:72237170-72237170|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2425231933594 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 162.23 1 162.23 161.73 162.73 0 0 0 0 0.23508 1 32604 32604 11.64 0.81637 1 3934 11946 2310 2313 4311 4311 -0.015319761420073519 APSPKNSFN 9 Unmodified _APSPKNSFN_ 0 0 0 INPPL1|p.P976S|1|0.52|ENSG00000165458|chr11:72237170-72237170|C/T|missense_variant INPPL1|p.P976S|1|0.52|ENSG00000165458|chr11:72237170-72237170|C/T|missense_variant INPPL1|p.P976S|1|0.52|ENSG00000165458|chr11:72237170-72237170|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24072265625 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 165.06 1 160.27 159.77 160.77 -4.7898 0 0 0 0.16428 1 33029 33029 28.487 10.352 1 3935 11946 2310 2313 4312 4312 -0.015319761420073519 APSPKNSFN 9 Unmodified _APSPKNSFN_ 0 0 0 INPPL1|p.P976S|1|0.52|ENSG00000165458|chr11:72237170-72237170|C/T|missense_variant INPPL1|p.P976S|1|0.52|ENSG00000165458|chr11:72237170-72237170|C/T|missense_variant INPPL1|p.P976S|1|0.52|ENSG00000165458|chr11:72237170-72237170|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23968505859375 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 171.42 1 166.51 166.01 167.01 -4.9149 0 0 0 0.23508 1 33948 33948 11.64 3.047 1 3936 11946 2310 2313 4313 4313 -0.015319761420073519 APSPVPWYW 9 Unmodified _APSPVPWYW_ 0 0 0 REV__ENST00000562888.1_1_16:74330432-74330609:-|nuORF REV__ENST00000562888.1_1_16:74330432-74330609:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 551.69873046875 2 551.77146 1101.52837 NaN NaN NaN NaN NaN NaN NaN 172.36 1 167.57 167.07 168.07 -4.7898 0 0 0 0.23508 1 35109 35109 7.9102 1.187 1 + 3937 23069 2311 2314 4314 4314 -0.018336247228717184 APSRGVRL 8 Unmodified _APSRGVRL_ 0 0 0 ENST00000478974.1_1_7:20371130-20371328:+|nuORF ENST00000478974.1_1_7:20371130-20371328:+|nuORF ENST00000478974.1_1_7:20371130-20371328:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 429.7658386230469 2 428.261594 854.508634 0.096753 4.1436E-05 -0.019294 -8.2627E-06 0.077459 3.3173E-05 428.26149949898996 149.19 1.2809 144.07 143.57 144.86 -5.1204 92 35 4 0 0 0 8448 1 28868 28868 10.074 9.7669 1 45161000 3938 10335 2312 2315 4315 4315 0.07556044057025701 APSSEEFAKVV 11 Unmodified _APSSEEFAKVV_ 0 0 0 REV__DNAH11|p.L3916V|1|0.14|ENSG00000105877|chr7:21867914-21867914|T/G|missense_variant REV__DNAH11|p.L3916V|1|0.14|ENSG00000105877|chr7:21867914-21867914|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 582.5364379882812 2 582.300778 1162.587 0.27312 0.00015904 0.14343 8.352E-05 0.41655 0.00024256 582.8025146284332 144.57 0.59044 139.9 139.54 140.13 -4.6694 24 16 2 0 0 0 0.92792 1 28621 28621 2.7352 0 1 5858200 + 3939 13706 2313 2316 4316 4316 0.012213870609457445 APSVTPAEE 9 Unmodified _APSVTPAEE_ 0 0 0 REV__nc|ENSG00000288701|Q5JSZ5|PRRC2B REV__nc|ENSG00000288701|Q5JSZ5|PRRC2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 902.4345092773438 1 900.430903 899.423627 0.12521 0.00011274 0.06317 5.688E-05 0.18838 0.00016962 900.43088719699 43.051 1.2556 40.445 39.863 41.118 -2.606 83 35 3 0 0 0 0.44262 1 7803 7803 23.148 6.2061 1 9812300 + 3940 24322 2314 2317 4317 4317 -0.03010790990094847 APSWVSRA 8 Unmodified _APSWVSRA_ 0 0 0 ENST00000370028.7_1_X:153184675-153185105:-|nuORF ENST00000370028.7_1_X:153184675-153185105:-|nuORF ENST00000370028.7_1_X:153184675-153185105:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2352294921875 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 141.32 1 141.32 140.82 141.82 0 0 0 0 0.21486 1 28151 28151 9.3474 0 1 3941 9133 2315 2318 4318 4318 0.009123624117592044 APSYIHEV 8 Unmodified _APSYIHEV_ 0 0 0 ENSG00000140937|ENST00000268603|CDH11;CDH11|p.R526Sfs*48|1|0.09|ENSG00000140937|chr16:64971643-64971644|-/GG|frameshift_variant;CDH11|p.R526Nfs*48|1|0.07|ENSG00000140937|chr16:64971644-64971645|-/GT|frameshift_variant;nc|ENSG00000140937|P55287-2|CDH11 ENSG00000140937|ENST00000268603|CDH11 ENSG00000140937|ENST00000268603|CDH11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2316589355469 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 73.694 1 70.1 69.6 70.6 -3.594 0 0 0 0.22934 1 13989 13989 0.68139 0.42991 1 3942 4332 2316 2319 4319 4319 -0.01086477027968158 APTLSWAPS 9 Unmodified _APTLSWAPS_ 0 0 0 ENST00000450917.1_1_2:3523256-3523661:+|nuORF ENST00000450917.1_1_2:3523256-3523661:+|nuORF ENST00000450917.1_1_2:3523256-3523661:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23968505859375 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 59.571 1 56.257 55.757 56.757 -3.3139 0 0 0 0.16428 1 11079 11079 28.487 3.813 1 3943 9974 2317 2320 4320 4320 -0.0016619051091311121 APTLSWAPS 9 Unmodified _APTLSWAPS_ 0 0 0 ENST00000450917.1_1_2:3523256-3523661:+|nuORF ENST00000450917.1_1_2:3523256-3523661:+|nuORF ENST00000450917.1_1_2:3523256-3523661:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2398681640625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 59.509 1 56.285 55.785 56.785 -3.2237 0 0 0 0.16428 1 11116 11116 28.487 3.813 1 3944 9974 2317 2320 4321 4321 -0.0016619051091311121 APTRPTGLSF 10 Unmodified _APTRPTGLSF_ 0 0 0 REV__ENST00000339431.8_1_7:102553560-102574338:+|nuORF REV__ENST00000339431.8_1_7:102553560-102574338:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6946411132812 2 523.785099 1045.55564 NaN NaN NaN NaN NaN NaN NaN 139.85 1 135.2 134.7 135.7 -4.6439 0 0 0 2.8426 1 27610 27610 0.84494 0 1 + 3945 20691 2318 2321 4322 4322 0.03468858817495857 APTTDKSNPWS 11 Unmodified _APTTDKSNPWS_ 0 0 0 REV__ENSG00000205277|ENST00000536621|MUC12 REV__ENSG00000205277|ENST00000536621|MUC12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.279052734375 2 602.28566 1202.55677 NaN NaN NaN NaN NaN NaN NaN 77.474 1 77.474 76.974 77.974 0 0 0 0 0.23379 1 15064 15064 5.2969 0.39987 1 + 3946 19584 2319 2322 4323 4323 -0.03640971604227161 APVEGQAER 9 Unmodified _APVEGQAER_ 0 0 0 REV__ENSG00000157765|ENST00000382051|SLC34A2 REV__ENSG00000157765|ENST00000382051|SLC34A2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74249267578125 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 165.37 1 160.39 159.89 160.89 -4.9811 0 0 0 0.23508 1 32317 32317 11.64 0.81637 1 + 3947 17308 2320 2323 4324 4324 -0.007208776303400555 APVIIQDS 8 Unmodified _APVIIQDS_ 0 0 0 REV__tr|U7SNP2|U7SNP2_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01835PE=4SV=1 REV__tr|U7SNP2|U7SNP2_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01835PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3766479492188 1 842.46181 841.454533 0.12463 0.000105 0.65563 0.00055235 0.78026 0.00065734 842.4620356548622 96.569 0.45815 92.65 92.36 92.818 -3.9194 20 12 2 0 0 0 0.66265 1 18557 18557 18.135 0 1 1471300 + 3948 24987 2321 2324 4325 4325 0.027464071148074254 APVIIQDS 8 Unmodified _APVIIQDS_ 0 0 0 REV__tr|U7SNP2|U7SNP2_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01835PE=4SV=1 REV__tr|U7SNP2|U7SNP2_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01835PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 842.46181 841.454533 0.42403 0.00035723 -0.15765 -0.00013282 0.26638 0.00022442 842.4615346272207 96.639 0.45601 92.541 92.213 92.669 -4.0978 -0.036792 -0.00030807 NaN 18.135 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2410800 + 3949 24987 2321 2324 0.027464071148074254 APVIIQDS 8 Unmodified _APVIIQDS_ 0 0 0 REV__tr|U7SNP2|U7SNP2_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01835PE=4SV=1 REV__tr|U7SNP2|U7SNP2_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01835PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 842.46181 841.454533 0.36489 0.00030741 0.23844 0.00020087 0.60333 0.00050828 842.4618786748805 96.778 0.61049 92.543 92.338 92.949 -4.2348 -0.035025 2.5622E-05 NaN 18.135 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1829100 + 3950 24987 2321 2324 0.027464071148074254 APVIIQDS 8 Unmodified _APVIIQDS_ 0 0 0 REV__tr|U7SNP2|U7SNP2_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01835PE=4SV=1 REV__tr|U7SNP2|U7SNP2_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01835PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 842.46181 841.454533 0.12463 0.000105 0.65563 0.00055235 0.78026 0.00065734 842.4620356548622 96.569 0.45815 92.65 92.36 92.818 -3.9194 0.071817 0.0003771 NaN 18.135 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1471300 + 3951 24987 2321 2324 0.027464071148074254 APVKKGKK 8 Unmodified _APVKKGKK_ 0 0 0 REV__EPS8L2|p.A296V|1|0.07|ENSG00000177106|chr11:721683-721683|C/T|missense_variant REV__EPS8L2|p.A296V|1|0.07|ENSG00000177106|chr11:721683-721683|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 428.2936096191406 2 428.292362 854.570172 NaN NaN NaN NaN NaN NaN NaN 165.58 1 160.6 160.1 161.1 -4.9811 0 0 0 0.21486 1 32378 32378 2.8892 0 1 + 3952 23498 2322 2325 4326 4326 0.13706975756326756 APVNGINGY 9 Unmodified _APVNGINGY_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7513122558594 2 452.729792 903.445031 0.24658 0.00011163 -0.079821 -3.6137E-05 0.16676 7.5496E-05 452.7296758812502 33.814 0.97377 33.814 33.271 34.244 0 78 27 5 0 0 0 0.59384 1 6124 6124 13.508 1.8676 1 18405000 3953 1532 2323 2326 4327 4327 -0.010553611707223354 APVPEPTLMPQ 11 Unmodified _APVPEPTLMPQ_ 0 0 0 REV__ENST00000394785.7_1_4:103997423-103997750:-|nuORF REV__ENST00000394785.7_1_4:103997423-103997750:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2665405273438 2 590.307549 1178.60055 NaN NaN NaN NaN NaN NaN NaN 163.98 1 163.98 163.48 164.48 0 0 0 0 0.22862 1 33106 33106 9.3831 0 1 + 3954 21251 2324 2327 4328 4328 0.018389215685601812 APVPGKKNLMP 11 Unmodified _APVPGKKNLMP_ 0 0 0 REV__nc|ENSG00000105655|Q9NPH2-3|ISYNA1 REV__nc|ENSG00000105655|Q9NPH2-3|ISYNA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3203735351562 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 163.21 1 158.02 157.52 158.52 -5.1878 0 0 0 0.23264 1 31749 31749 6.2058 0.47393 1 + 3955 15007 2325 2328 4329 4329 0.08394924421986616 APVRAFLPALK 11 Unmodified _APVRAFLPALK_ 0 0 0 nc|ENSG00000166947|P16452-3|EPB42;EPB42|p.C670Sfs*10|1|0.04|ENSG00000166947|chr15:43197369-43197370|-/TATAAAGG|frameshift_variant;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42;EPB42|p.L487Pfs*13|1|0.39|ENSG00000166947|chr15:43206488-43206489|-/G|frameshift_variant nc|ENSG00000166947|P16452-3|EPB42 nc|ENSG00000166947|P16452-3|EPB42 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 591.3480224609375 2 591.871508 1181.72846 0.59836 0.00035415 -3.8771 -0.0022947 -3.2787 -0.0019406 592.3719390491399 162.84 0.17728 157.7 157.61 157.79 -5.1438 5 4 2 0 0 0 0.95337 1 31671 31671 9.3831 2.66 1 7088400 3956 5770 2326 2329 4330 4330 0.1448684994472842 APVRAFLPALK 11 Unmodified _APVRAFLPALK_ 0 0 0 nc|ENSG00000166947|P16452-3|EPB42;EPB42|p.C670Sfs*10|1|0.04|ENSG00000166947|chr15:43197369-43197370|-/TATAAAGG|frameshift_variant;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42;EPB42|p.L487Pfs*13|1|0.39|ENSG00000166947|chr15:43206488-43206489|-/G|frameshift_variant nc|ENSG00000166947|P16452-3|EPB42 nc|ENSG00000166947|P16452-3|EPB42 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 591.871508 1181.72846 0.73694 0.00043618 -0.86952 -0.00051465 -0.13258 -7.847E-05 592.3725115921833 162.7 0.1684 157.91 157.86 158.03 -4.7898 0.10451 0.00064207 NaN 9.3831 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 6615900 3957 5770 2326 2329 0.1448684994472842 APVSSPEYTK 10 Unmodified _APVSSPEYTK_ 0 0 0 nc|ENSG00000078140|P61086-2|UBE2K;ENSG00000078140|ENST00000261427|UBE2K nc|ENSG00000078140|P61086-2|UBE2K nc|ENSG00000078140|P61086-2|UBE2K MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 539.6528930664062 2 539.774396 1077.53424 NaN NaN NaN NaN NaN NaN NaN 171.47 1 171.47 170.97 171.97 0 0 0 0 0.22588 1 35326 35326 10.074 1.3285 1 3958 1570 2327 2330 4331 4331 -0.001425710018565951 APWEDPAKWV 10 Unmodified _APWEDPAKWV_ 0 0 0 nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;ENST00000528923.1_1_11:20136077-20139801:+|nuORF;nc|ENSG00000166833|Q8IVL1-7|NAV2;ENST00000533746.1_1_11:20127056-20139801:+|nuORF nc|ENSG00000166833|Q8IVL1-11|NAV2 nc|ENSG00000166833|Q8IVL1-11|NAV2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 600.3941040039062 2 599.798206 1197.58186 0.54876 0.00032915 0.55799 0.00033468 1.1068 0.00066383 599.8000052585664 164.69 0.21095 159.62 159.51 159.72 -5.0648 8 5 2 0 0 0 0.91149 1 32105 32105 7.2892 5.0065 1 4624600 3959 12442 2328 2331 4332 4332 -0.009028720110109134 APWIRLMVKVK 11 Unmodified _APWIRLMVKVK_ 0 0 0 REV__KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant REV__KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 671.2824096679688 2 670.915393 1339.81623 NaN NaN NaN NaN NaN NaN NaN 174.5 1 169.61 169.11 170.11 -4.8916 0 0 0 0.23324 1 34741 34741 5.7319 0.43497 1 + 3960 14202 2329 2332 4333 4333 0.15991727543814704 APWITRIPQ 9 Unmodified _APWITRIPQ_ 0 0 0 LILRA1|p.L357*|1|0.29|ENSG00000104974|chr19:54596297-54596297|T/-|frameshift_variant;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;LILRA1|p.N448Kfs*34|1|0.3|ENSG00000104974|chr19:54600538-54600539|-/A|frameshift_variant;LILRA1|p.A451Ffs*34|1|0.05|ENSG00000104974|chr19:54600547-54600548|-/CATTCCAAGG|frameshift_variant;ENSG00000104974|ENST00000251372|LILRA1;LILRB1|p.Y99Ifs*4|1|0.16|ENSG00000104972|chr19:54631723-54631724|-/A|frameshift_variant;ENST00000473156.5_1_19:55105185-55107230:+|nuORF;nc|ENSG00000104974|O75019-2|LILRA1;ENSG00000104972|ENST00000324602|LILRB1 LILRA1|p.L357*|1|0.29|ENSG00000104974|chr19:54596297-54596297|T/-|frameshift_variant;ENSG00000104972|ENST00000324602|LILRB1 LILRA1|p.L357*|1|0.29|ENSG00000104974|chr19:54596297-54596297|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2704467773438 2 541.311284 1080.60801 0.3281 0.0001776 -2.7271 -0.0014762 -2.399 -0.0012986 541.3089243531257 138.16 0.1748 133.32 133.27 133.44 -4.84 5 4 2 0 0 0 0.74655 1 26626 26626 10.824 1.4408 1 1301400 3961 2274;2272 2330 2333 4334 4334 0.07093441951110435 APWLERYF 8 Unmodified _APWLERYF_ 0 0 0 ENST00000470694.1_1_1:160991256-161008693:-|nuORF ENST00000470694.1_1_1:160991256-161008693:-|nuORF ENST00000470694.1_1_1:160991256-161008693:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2774658203125 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 159.81 1 154.58 154.08 155.08 -5.2299 0 0 0 0.21486 1 31022 31022 11.114 1.0405 1 3962 10203 2331 2334 4335 4335 0.0022177765142714634 APWNLLLC 8 Unmodified _APWNLLLC_ 0 0 0 REV__ENST00000509376.5_1_4:52779756-52779993:+|nuORF REV__ENST00000509376.5_1_4:52779756-52779993:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2503662109375 2 465.249306 928.484059 NaN NaN NaN NaN NaN NaN NaN 164.66 1 159.87 159.37 160.37 -4.7898 0 0 0 0.21486 1 32918 32918 10.183 0.83596 1 + 3963 22528 2332 2335 4336 4336 0.01695647859287419 APWRWRWRRWR 11 Unmodified _APWRWRWRRWR_ 0 0 0 ENST00000253814.5_1_5:141488387-141511833:+|nuORF ENST00000253814.5_1_5:141488387-141511833:+|nuORF ENST00000253814.5_1_5:141488387-141511833:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 571.153076171875 3 571.315026 1710.92325 NaN NaN NaN NaN NaN NaN NaN 171.31 1 171.31 170.81 171.81 0 0 0 0 0.22632 1 35284 35284 0.094841 0.068635 1 3964 8241 2333 2336 4337 4337 0.09622458593071315 APYFVYLG 8 Unmodified _APYFVYLG_ 0 0 0 SLC22A4|p.T534Qfs*14|1|0.07|ENSG00000197208|chr5:132343773-132343773|A/-|frameshift_variant;ENSG00000197208|ENST00000200652|SLC22A4 SLC22A4|p.T534Qfs*14|1|0.07|ENSG00000197208|chr5:132343773-132343773|A/-|frameshift_variant SLC22A4|p.T534Qfs*14|1|0.07|ENSG00000197208|chr5:132343773-132343773|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24285888671875 2 465.242004 928.469455 NaN NaN NaN NaN NaN NaN NaN 31.481 1 29.332 28.832 29.832 -2.1483 0 0 0 0.21486 1 5425 5425 11.114 1.7313 1 3965 7341 2334 2337 4338 4338 0.0023589898280533816 APYLPKEIRSS 11 Unmodified _APYLPKEIRSS_ 0 0 0 nc|ENSG00000134444|Q9P260-2|RELCH;nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260-2|RELCH MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.772216796875 2 630.85097 1259.68739 NaN NaN NaN NaN NaN NaN NaN 166.18 1 161.39 160.89 161.89 -4.7898 0 0 0 0.23018 1 33351 33351 8.1555 1.0538 1 3966 12335 2335 2338 4339 4339 0.06793044114624536 APYPFGPVAY 10 Unmodified _APYPFGPVAY_ 0 0 0 REV__nc|ENSG00000078328|Q9NWB1-3|RBFOX1 REV__nc|ENSG00000078328|Q9NWB1-3|RBFOX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2704467773438 2 541.271293 1080.52803 NaN NaN NaN NaN NaN NaN NaN 138.17 1 133.33 132.83 133.83 -4.84 0 0 0 0.22588 1 26626 26626 7.9102 0 1 + 3967 23954 2336 2339 4340 4340 -0.009010444427076436 AQADFVKSTV 10 Unmodified _AQADFVKSTV_ 0 0 0 LRWD1|p.A173T|1|0.29|ENSG00000161036|chr7:102467423-102467423|G/A|missense_variant LRWD1|p.A173T|1|0.29|ENSG00000161036|chr7:102467423-102467423|G/A|missense_variant LRWD1|p.A173T|1|0.29|ENSG00000161036|chr7:102467423-102467423|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2786254882812 2 533.282389 1064.55022 0.75738 0.0004039 1.3443 0.00071688 2.1017 0.0011208 533.2827773165963 107.28 0.71266 103.15 102.84 103.56 -4.135 34 20 3 0 0 0 0.46263 1 20581 20581 0.84494 0 1 2144800 3968 12094 2337 2340 4341 4341 0.020531352350417365 AQAEAAGLHKV 11 Unmodified _AQAEAAGLHKV_ 0 0 0 TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7924194335938 2 547.80128 1093.58801 0.15901 8.7107E-05 0.7255 0.00039743 0.88451 0.00048454 548.3033671535449 26.267 0.20662 24.633 24.513 24.719 -1.6347 8 5 2 0 0 0 0.68348 1 4329 4329 12.873 2.6892 1 275070 3969 1551 2338 2341 4342 4342 0.044956462205163916 AQDLFAALN 9 Unmodified _AQDLFAALN_ 0 0 0 REV__ENST00000460314.1_1_1:209953741-209954724:+|nuORF REV__ENST00000460314.1_1_1:209953741-209954724:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7784729003906 2 481.750724 961.486896 0.073672 3.5492E-05 -0.017083 -8.2299E-06 0.056589 2.7262E-05 481.7506138957664 115.61 0.78905 111.13 110.78 111.56 -4.4726 37 22 2 0 0 0 0.12542 1 22767 22767 56.177 0 1 2928200 + 3970 21876 2339 2342 4343 4343 0.004611945177884991 AQDLFAALN 9 Unmodified _AQDLFAALN_ 0 0 0 REV__ENST00000460314.1_1_1:209953741-209954724:+|nuORF REV__ENST00000460314.1_1_1:209953741-209954724:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7691345214844 2 481.750724 961.486896 0.29283 0.00014107 -0.24076 -0.00011599 0.052071 2.5085E-05 481.75049788600063 115.81 0.75705 111.23 110.84 111.59 -4.5815 49 21 3 0 0 0 0.13813 1 22209 22209 53.833 0 1 2306700 + 3971 21876 2339 2342 4344 4344 0.004611945177884991 AQDLRESY 8 Unmodified _AQDLRESY_ 0 0 0 nc|ENSG00000144504|Q9P2S6-3|ANKMY1;nc|ENSG00000144504|Q9P2S6-2|ANKMY1;ANKMY1|p.V598Yfs*37|1|0.29|ENSG00000144504|chr2:240512888-240512888|C/-|frameshift_variant;ENSG00000144504|ENST00000401804|ANKMY1;ENST00000464991.5_1_2:241492231-241494423:-|nuORF;ANKMY1|p.Y380Lfs*2|1|0.21|ENSG00000144504|chr2:240524312-240524313|AC/-|frameshift_variant;ANKMY1|p.D434Gfs*17|1|0.64|ENSG00000144504|chr2:240524149-240524150|-/C|frameshift_variant nc|ENSG00000144504|Q9P2S6-3|ANKMY1 nc|ENSG00000144504|Q9P2S6-3|ANKMY1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 491.73748779296875 2 491.235439 980.456324 -0.10921 -5.3647E-05 0.26577 0.00013055 0.15656 7.6907E-05 491.235587953344 59.466 2.1992 56.242 54.972 57.171 -3.2237 81 62 2 0 0 0 0.89147 1 11214 11214 3.5871 2.9602 1 1293200 3972 157 2340 2343 4345 4345 -0.034685838672317004 AQDLRESY 8 Unmodified _AQDLRESY_ 0 0 0 nc|ENSG00000144504|Q9P2S6-3|ANKMY1;nc|ENSG00000144504|Q9P2S6-2|ANKMY1;ANKMY1|p.V598Yfs*37|1|0.29|ENSG00000144504|chr2:240512888-240512888|C/-|frameshift_variant;ENSG00000144504|ENST00000401804|ANKMY1;ENST00000464991.5_1_2:241492231-241494423:-|nuORF;ANKMY1|p.Y380Lfs*2|1|0.21|ENSG00000144504|chr2:240524312-240524313|AC/-|frameshift_variant;ANKMY1|p.D434Gfs*17|1|0.64|ENSG00000144504|chr2:240524149-240524150|-/C|frameshift_variant nc|ENSG00000144504|Q9P2S6-3|ANKMY1 nc|ENSG00000144504|Q9P2S6-3|ANKMY1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 491.235439 980.456324 0.044335 2.1779E-05 0.72765 0.00035745 0.77199 0.00037923 491.23586723328407 59.114 0.87909 56.204 55.612 56.491 -2.9105 -0.018942 0.00020887 NaN 3.5871 38 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1372300 3973 157 2340 2343 -0.034685838672317004 AQDQPVKM 8 Unmodified _AQDQPVKM_ 0 0 0 ENST00000590114.5_1_17:43138721-43173651:+|nuORF;ENSG00000136448|ENST00000258960|NMT1 ENST00000590114.5_1_17:43138721-43173651:+|nuORF ENST00000590114.5_1_17:43138721-43173651:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2341613769531 2 458.731477 915.448402 0.28314 0.00012988 -0.084721 -3.8864E-05 0.19841 9.1019E-05 458.73148002569644 30.033 0.31576 30.033 29.849 30.164 0 11 8 2 0 0 0 0.94768 1 5375 5375 24.021 10.513 1 699160 3974 4010 2341 2344 4346 4346 -0.01270434388356989 AQDQPVKM 8 Unmodified _AQDQPVKM_ 0 0 0 ENST00000590114.5_1_17:43138721-43173651:+|nuORF;ENSG00000136448|ENST00000258960|NMT1 ENST00000590114.5_1_17:43138721-43173651:+|nuORF ENST00000590114.5_1_17:43138721-43173651:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.731477 915.448402 0.11878 5.4488E-05 0.18387 8.4346E-05 0.30265 0.00013883 458.7315703816182 32.086 0.35457 29.855 29.691 30.045 -2.2305 -0.089108 0.00018085 NaN 24.021 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 562940 3975 4010 2341 2344 -0.01270434388356989 AQDQPVKM 8 Unmodified _AQDQPVKM_ 0 0 0 ENST00000590114.5_1_17:43138721-43173651:+|nuORF;ENSG00000136448|ENST00000258960|NMT1 ENST00000590114.5_1_17:43138721-43173651:+|nuORF ENST00000590114.5_1_17:43138721-43173651:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.731477 915.448402 0.2236 0.00010257 -0.14169 -6.4996E-05 0.081914 3.7577E-05 458.7314936210471 31.97 0.42056 29.944 29.694 30.114 -2.0264 -0.00018067 -0.00011784 NaN 24.021 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 475690 3976 4010 2341 2344 -0.01270434388356989 AQEDSTFPAQ 10 Unmodified _AQEDSTFPAQ_ 0 0 0 nc|ENSG00000156687|Q6UXZ4-2|UNC5D;ENSG00000156687|ENST00000404895|UNC5D nc|ENSG00000156687|Q6UXZ4-2|UNC5D nc|ENSG00000156687|Q6UXZ4-2|UNC5D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7799682617188 2 547.24346 1092.47237 0.38303 0.00020961 -0.031297 -1.7127E-05 0.35173 0.00019248 547.2433307636292 27.437 0.48428 27.437 27.216 27.7 0 30 13 3 0 0 0 0.89697 1 4803 4803 11.495 11.495 1 2514500 3977 5098 2342 2345 4347 4347 -0.07016922420984884 AQENGTYRC 9 Unmodified _AQENGTYRC_ 0 0 0 BTN2A1|p.I278Dfs*9|1|0.21|ENSG00000112763|chr6:26465295-26465296|-/A|frameshift_variant;BTN2A1|p.K277Rfs*18|1|0.12|ENSG00000112763|chr6:26465296-26465296|A/-|frameshift_variant;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1 BTN2A1|p.I278Dfs*9|1|0.21|ENSG00000112763|chr6:26465295-26465296|-/A|frameshift_variant BTN2A1|p.I278Dfs*9|1|0.21|ENSG00000112763|chr6:26465295-26465296|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2807006835938 2 521.224548 1040.43454 0.51477 0.00026831 0.89121 0.00046452 1.406 0.00073284 521.2257835590461 32.149 0.59346 30 29.722 30.316 -2.1483 28 16 3 0 0 0 0.61228 1 5508 5508 12.241 0.60036 1 454430 3978 345 2343 2346 4348 4348 -0.08405711887439793 AQENGTYRC 9 Unmodified _AQENGTYRC_ 0 0 0 BTN2A1|p.I278Dfs*9|1|0.21|ENSG00000112763|chr6:26465295-26465296|-/A|frameshift_variant;BTN2A1|p.K277Rfs*18|1|0.12|ENSG00000112763|chr6:26465296-26465296|A/-|frameshift_variant;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1 BTN2A1|p.I278Dfs*9|1|0.21|ENSG00000112763|chr6:26465295-26465296|-/A|frameshift_variant BTN2A1|p.I278Dfs*9|1|0.21|ENSG00000112763|chr6:26465295-26465296|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.224548 1040.43454 -0.027027 -1.4087E-05 1.5114 0.00078776 1.4843 0.00077367 521.2253228054542 32.06 0.53225 29.83 29.657 30.189 -2.2305 -0.089326 -0.00029616 NaN 12.241 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1310000 3979 345 2343 2346 -0.08405711887439793 AQENGTYRC 9 Unmodified _AQENGTYRC_ 0 0 0 BTN2A1|p.I278Dfs*9|1|0.21|ENSG00000112763|chr6:26465295-26465296|-/A|frameshift_variant;BTN2A1|p.K277Rfs*18|1|0.12|ENSG00000112763|chr6:26465296-26465296|A/-|frameshift_variant;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1 BTN2A1|p.I278Dfs*9|1|0.21|ENSG00000112763|chr6:26465295-26465296|-/A|frameshift_variant BTN2A1|p.I278Dfs*9|1|0.21|ENSG00000112763|chr6:26465295-26465296|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.224548 1040.43454 -0.4428 -0.0002308 2.5969 0.0013536 2.1541 0.0011228 521.2263117867636 31.954 0.35009 29.927 29.798 30.148 -2.0264 0.0080437 0.00083545 NaN 12.241 15 9 3 NaN NaN NaN NaN 0 NaN NaN 0 914480 3980 345 2343 2346 -0.08405711887439793 AQEPPPPPP 9 Unmodified _AQEPPPPPP_ 0 0 0 ENST00000258526.8_1_12:94542512-94542695:+|nuORF;ENST00000555004.2_3_14:96554171-96554918:+|nuORF ENST00000258526.8_1_12:94542512-94542695:+|nuORF ENST00000258526.8_1_12:94542512-94542695:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2386474609375 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 37.874 1 35.405 34.905 35.905 -2.4688 0 0 0 3.6106E-08 1 7003 7003 103.35 3.5546 1 3981 8270 2344 2347 4349 4349 -0.0016619051091311121 AQEPPPPPP 9 Unmodified _AQEPPPPPP_ 0 0 0 ENST00000258526.8_1_12:94542512-94542695:+|nuORF;ENST00000555004.2_3_14:96554171-96554918:+|nuORF ENST00000258526.8_1_12:94542512-94542695:+|nuORF ENST00000258526.8_1_12:94542512-94542695:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24969482421875 2 465.239993 928.465432 0.039287 1.8278E-05 -0.50646 -0.00023562 -0.46717 -0.00021735 465.2391344084747 37.615 2.581 35.267 34.72 37.301 -2.3479 123 73 3 0 0 0 0.023341 2 6721 6721;6768 88.954 5.0992 1 3900200 3982 8270 2344 2347 4350;4351 4350 -0.0016619051091311121 AQERAVSPA 9 Unmodified _AQERAVSPA_ 0 0 0 REV__ENST00000426077.2_1_2:120980551-120980743:-|nuORF REV__ENST00000426077.2_1_2:120980551-120980743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698303222656 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 12.878 1 12.878 12.378 13.378 0 0 0 0 0.19624 1 1824 1824 0 0 1 + 3983 21562 2345 2348 4352 4352 0.010754262322734576 AQEVGLLAD 9 Unmodified _AQEVGLLAD_ 0 0 0 ENST00000508913.5_1_5:43043449-43044931:+|nuORF ENST00000508913.5_1_5:43043449-43044931:+|nuORF ENST00000508913.5_1_5:43043449-43044931:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2342224121094 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 25.721 1 23.867 23.367 24.367 -1.8534 0 0 0 0.19657 1 4239 4239 4.897 3.6822 1 3984 10721 2346 2349 4353 4353 0.010254882809022092 AQFLERFPELE 11 Unmodified _AQFLERFPELE_ 0 0 0 ENST00000556454.1_1_14:95660863-95677170:-|nuORF;CLMN|p.K865Rfs*10|2|0.35|ENSG00000165959|chr14:95196612-95196612|T/-|frameshift_variant;ENSG00000165959|ENST00000298912|CLMN;CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant ENST00000556454.1_1_14:95660863-95677170:-|nuORF ENST00000556454.1_1_14:95660863-95677170:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2388610839844 3 460.238232 1377.69287 NaN NaN NaN NaN NaN NaN NaN 51.34 1 48.289 47.789 48.789 -3.0517 0 0 0 0.22632 1 9459 9459 0.026206 0 1 3985 579 2347 2350 4354 4354 0.019127229064451967 AQGLALLK 8 Unmodified _AQGLALLK_ 0 0 0 ENST00000530149.1_1_11:211118-211532:+|nuORF ENST00000530149.1_1_11:211118-211532:+|nuORF ENST00000530149.1_1_11:211118-211532:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 407.24371337890625 2 407.263271 812.511988 NaN NaN NaN NaN NaN NaN NaN 77.375 1 73.717 73.217 74.217 -3.6588 0 0 0 0.21486 1 14730 14730 2.5775 0 1 3986 10953 2348 2351 4355 4355 0.09823294111049563 AQGRRKAF 8 Unmodified _AQGRRKAF_ 0 0 0 nc|ENSG00000262085|Q8NH06|OR1P1 nc|ENSG00000262085|Q8NH06|OR1P1 nc|ENSG00000262085|Q8NH06|OR1P1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 467.2708740234375 2 467.272493 932.530432 NaN NaN NaN NaN NaN NaN NaN 140.13 1 140.13 139.63 140.63 0 0 0 0 0.23711 1 27884 27884 0.12286 0 1 3987 12636 2349 2352 4356 4356 0.06146848805610716 AQHPFIMSL 9 Unmodified _AQHPFIMSL_ 0 0 0 REV__tr|U7T2U6|U7T2U6_FUSNUBeta-ketoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fabHPE=3SV=1 REV__tr|U7T2U6|U7T2U6_FUSNUBeta-ketoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fabHPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2694091796875 2 522.27077 1042.52699 NaN NaN NaN NaN NaN NaN NaN 135.76 1 130.87 130.37 131.37 -4.8951 0 0 0 0.23277 1 26081 26081 13.906 0.86358 1 + 3988 25343 2350 2353 4357 4357 0.007424179167173861 AQKATVSG 8 Unmodified _AQKATVSG_ 0 0 0 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2103576660156 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 106.84 1 102.43 101.93 102.93 -4.4121 0 0 0 0.23782 1 20498 20498 0.12286 0 1 3989 7387 2351 2354 4358 4358 0.018129672835243582 AQLKPKVKS 9 Unmodified _AQLKPKVKS_ 0 0 0 BAHCC1|p.R1605Afs*107|1|0.22|ENSG00000266074|chr17:81456436-81456436|C/-|frameshift_variant;BAHCC1|p.P2034Lfs*15|1|0.65|ENSG00000266074|chr17:81460375-81460375|C/-|frameshift_variant;ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1 BAHCC1|p.R1605Afs*107|1|0.22|ENSG00000266074|chr17:81456436-81456436|C/-|frameshift_variant BAHCC1|p.R1605Afs*107|1|0.22|ENSG00000266074|chr17:81456436-81456436|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.2127990722656 3 333.550082 997.628415 0.26452 8.823E-05 -0.12583 -4.197E-05 0.13869 4.626E-05 333.5500214595779 66.37 0.83816 62.874 62.346 63.184 -3.4965 39 23 2 0 0 0 0.62689 1 12361 12361 0.073264 0 1 2623200 3990 296 2352 2355 4359 4359 0.1295061261095043 AQLPMLVRAA 10 Unmodified _AQLPMLVRAA_ 0 0 0 REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.55908203125 3 357.211071 1068.61138 -0.62484 -0.0002232 -1.9645 -0.00070175 -2.5894 -0.00092495 357.2100275137666 14.596 0.18061 13.423 13.314 13.495 -1.173 6 4 2 0 0 0 0.75487 1 1983 1983 4.1895 2.9962 1 201770 + 3991 15734 2353 2356 4360 4360 0.07982368733473777 AQLPMLVRAA 10 Unmodified _AQLPMLVRAA_ 0 0 0 REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 357.211071 1068.61138 -0.38263 -0.00013668 -3.9809 -0.001422 -4.3635 -0.0015587 357.2098416401391 13.811 0.21285 13.811 13.65 13.863 0 0.2347 -0.001486 NaN 4.1895 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 374860 + 3992 15734 2353 2356 0.07982368733473777 AQLPMLVRAA 10 Unmodified _AQLPMLVRAA_ 0 0 0 REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.211071 1068.61138 -0.92358 -0.00032991 -1.2308 -0.00043965 -2.1544 -0.00076956 357.21048002442456 14.608 0.17078 13.494 13.365 13.536 -1.1142 -0.081951 0.0014612 NaN 4.1895 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 218330 + 3993 15734 2353 2356 0.07982368733473777 AQLPMLVRAA 10 Unmodified _AQLPMLVRAA_ 0 0 0 REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 357.211071 1068.61138 -0.62484 -0.0002232 -1.9645 -0.00070175 -2.5894 -0.00092495 357.2100275137666 14.596 0.18061 13.423 13.314 13.495 -1.173 -0.15275 0.00067488 NaN 4.1895 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 201770 + 3994 15734 2353 2356 0.07982368733473777 AQLQRLELERT 11 Unmodified _AQLQRLELERT_ 0 0 0 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75555419921875 3 452.924647 1355.75211 0.14611 6.6177E-05 -0.049895 -2.2599E-05 0.096215 4.3578E-05 452.92458334639986 95.928 0.72643 95.928 95.558 96.285 0 53 20 3 0 0 0 0.54604 1 18772 18772 8.5636 3.1609 1 8104700 + 3995 17021 2354 2357 4361 4361 0.08846618920597393 AQLQRLELERT 11 Unmodified _AQLQRLELERT_ 0 0 0 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75604248046875 3 452.924647 1355.75211 0.19826 8.9798E-05 -0.040121 -1.8172E-05 0.15814 7.1626E-05 452.924656989398 99.756 0.64196 95.459 95.14 95.782 -4.297 48 18 3 0 0 0 0.47027 1 19082 19082 12.175 5.5444 1 6702100 + 3996 17021 2354 2357 4362 4362 0.08846618920597393 AQLQRLELERT 11 Unmodified _AQLQRLELERT_ 0 0 0 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75543212890625 3 452.924647 1355.75211 0.17604 7.9734E-05 0.04514 2.0445E-05 0.22118 0.00010018 452.92464101062285 99.525 0.86327 95.569 95.14 96.003 -3.9564 59 24 4 0 0 0 0.54604 1 19085 19085 8.4443 4.568 1 5162600 + 3997 17021 2354 2357 4363 4363 0.08846618920597393 AQLQRLELERT 11 Unmodified _AQLQRLELERT_ 0 0 0 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 452.924647 1355.75211 0.19826 8.9798E-05 -0.040121 -1.8172E-05 0.15814 7.1626E-05 452.924656989398 99.756 0.64196 95.459 95.14 95.782 -4.297 -0.028682 -0.00025599 NaN 12.175 48 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6702100 + 3998 17021 2354 2357 0.08846618920597393 AQLQRLELERT 11 Unmodified _AQLQRLELERT_ 0 0 0 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 452.924647 1355.75211 0.17604 7.9734E-05 0.04514 2.0445E-05 0.22118 0.00010018 452.92464101062285 99.525 0.86327 95.569 95.14 96.003 -3.9564 0.08085 -0.00014014 NaN 12.175 59 24 4 NaN NaN NaN NaN 0 NaN NaN 0 5162600 + 3999 17021 2354 2357 0.08846618920597393 AQPDALNVP 9 Unmodified _AQPDALNVP_ 0 0 0 CCL13|p.Q46Lfs*18|1|0.09|ENSG00000181374|chr17:34357533-34357534|-/TTAGAAACGGGATTTCTTCATATTATGCTAGACAGAAAAATTCT|frameshift_variant;ENSG00000181374|ENST00000225844|CCL13 CCL13|p.Q46Lfs*18|1|0.09|ENSG00000181374|chr17:34357533-34357534|-/TTAGAAACGGGATTTCTTCATATTATGCTAGACAGAAAAATTCT|frameshift_variant CCL13|p.Q46Lfs*18|1|0.09|ENSG00000181374|chr17:34357533-34357534|-/TTAGAAACGGGATTTCTTCATATTATGCTAGACAGAAAAATTCT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 462.7368469238281 2 462.742899 923.471246 -0.041324 -1.9122E-05 -1.0406 -0.00048153 -1.0819 -0.00050065 462.7422950242531 54.133 0.31697 50.995 50.747 51.064 -3.1377 13 8 2 0 0 0 0.13201 1 10018 10018 2.8827 0 1 3475200 4000 428 2355 2358 4364 4364 0.006449080007428165 AQPLILPV 8 Unmodified _AQPLILPV_ 0 0 0 REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2452697753906 2 425.773471 849.53239 0.52761 0.00022464 -0.045964 -1.957E-05 0.48164 0.00020507 425.77337215789703 22.658 0.37948 21.104 20.924 21.304 -1.5532 17 10 2 0 0 0 0.90013 1 3908 3908 0.30703 0 1 1312900 + 4001 13770 2356 2359 4365 4365 0.10160464770842736 AQPLILPV 8 Unmodified _AQPLILPV_ 0 0 0 REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 425.773471 849.53239 0.091808 3.9089E-05 0.45519 0.00019381 0.547 0.0002329 425.7735735636885 21.045 0.41258 21.045 20.885 21.298 0 -0.035914 9.2571E-05 NaN 0.30703 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1447100 + 4002 13770 2356 2359 0.10160464770842736 AQPLILPV 8 Unmodified _AQPLILPV_ 0 0 0 REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 425.773471 849.53239 -0.13949 -5.9391E-05 0.68082 0.00028987 0.54133 0.00023048 425.7737069262703 22.546 0.38602 21.093 20.91 21.296 -1.4535 0.012095 0.0002847 NaN 0.30703 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1257400 + 4003 13770 2356 2359 0.10160464770842736 AQPLWRRPQ 9 Unmodified _AQPLWRRPQ_ 0 0 0 REV__ENST00000440293.5_1_12:48191201-48213572:-|nuORF REV__ENST00000440293.5_1_12:48191201-48213572:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3132934570312 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 124.93 1 120.33 119.83 120.83 -4.5984 0 0 0 0.23508 1 24633 24633 6.2058 0 1 + 4004 21704 2357 2360 4366 4366 0.06666764931219404 AQQPHIAGV 9 Unmodified _AQQPHIAGV_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24810791015625 2 460.751059 919.487565 0.44398 0.00020456 -0.23641 -0.00010893 0.20756 9.5634E-05 460.7508372381122 49.603 0.48719 49.603 49.265 49.753 0 33 13 3 0 0 0 0.037229 1 9397 9397 74.423 36.449 1 4491400 4005 1275 2358 2361 4367 4367 0.0246003395752723 AQQPHIAGV 9 Unmodified _AQQPHIAGV_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23150634765625 2 460.751059 919.487565 -0.27441 -0.00012644 0.52939 0.00024392 0.25498 0.00011748 460.75123537675944 52.489 0.65607 49.605 49.135 49.791 -2.8837 45 18 3 0 0 0 0.10777 1 10014 10014 67.344 22.937 1 9795600 4006 1275 2358 2361 4368 4368 0.0246003395752723 AQQPHIAGV 9 Unmodified _AQQPHIAGV_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2295837402344 2 460.751059 919.487565 -0.054323 -2.5029E-05 0.32665 0.0001505 0.27233 0.00012548 460.75118264287386 52.668 0.56021 49.573 49.164 49.724 -3.0954 38 15 3 0 0 0 0.36689 1 9662 9662 34.102 7.2188 1 6725900 4007 1275 2358 2361 4369 4369 0.0246003395752723 AQQPHIAGV 9 Unmodified _AQQPHIAGV_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.751059 919.487565 0.001963 9.0447E-07 0.25606 0.00011798 0.25803 0.00011889 460.7511107912073 52.692 0.62758 49.605 49.168 49.796 -3.0876 0.0084876 -2.2589E-05 NaN 74.423 43 17 3 NaN NaN NaN NaN 0 NaN NaN 0 8988700 4008 1275 2358 2361 0.0246003395752723 AQQYLEKY 8 Unmodified _AQQYLEKY_ 0 0 0 MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant;MMP10|p.L211Sfs*23|1|0.13|ENSG00000166670|chr11:102776764-102776767|AATA/-|frameshift_variant;ENSG00000166670|ENST00000279441|MMP10;MMP10|p.I63Sfs*12|1|0.35|ENSG00000166670|chr11:102779664-102779664|T/-|frameshift_variant MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2658081054688 2 521.763832 1041.51311 0.12138 6.333E-05 0.40095 0.0002092 0.52232 0.00027253 521.763960452388 71.945 0.73673 71.945 71.564 72.301 0 52 20 3 0 0 0 0.1027 2 13973 13969;13973 62.573 42.371 1 16791000 4009 5740 2359 2362 4370;4371 4371 -0.00598536310712916 AQQYLEKY 8 Unmodified _AQQYLEKY_ 0 0 0 MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant;MMP10|p.L211Sfs*23|1|0.13|ENSG00000166670|chr11:102776764-102776767|AATA/-|frameshift_variant;ENSG00000166670|ENST00000279441|MMP10;MMP10|p.I63Sfs*12|1|0.35|ENSG00000166670|chr11:102779664-102779664|T/-|frameshift_variant MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.265869140625 2 521.763832 1041.51311 -0.2826 -0.00014745 1.0845 0.00056588 0.80194 0.00041842 521.764308021376 75.515 0.69218 72.099 71.781 72.473 -3.4151 50 19 3 0 0 0 0.27251 2 14768 14765;14768 39.111 30.218 1 16190000 4010 5740 2359 2362 4372;4373 4373 -0.00598536310712916 AQQYLEKY 8 Unmodified _AQQYLEKY_ 0 0 0 MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant;MMP10|p.L211Sfs*23|1|0.13|ENSG00000166670|chr11:102776764-102776767|AATA/-|frameshift_variant;ENSG00000166670|ENST00000279441|MMP10;MMP10|p.I63Sfs*12|1|0.35|ENSG00000166670|chr11:102779664-102779664|T/-|frameshift_variant MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2656860351562 2 521.763832 1041.51311 -0.60793 -0.00031719 1.2832 0.00066955 0.67532 0.00035236 521.7645029229699 75.854 0.68744 72.131 71.828 72.515 -3.7227 56 19 4 0 0 0 0.11546 4 14367 14321;14334;14367;14408 60.074 30.218 1 13305000 4011 5740 2359 2362 4374;4375;4376;4377 4376 -0.00598536310712916 AQQYLEKY 8 Unmodified _AQQYLEKY_ 0 0 0 MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant;MMP10|p.L211Sfs*23|1|0.13|ENSG00000166670|chr11:102776764-102776767|AATA/-|frameshift_variant;ENSG00000166670|ENST00000279441|MMP10;MMP10|p.I63Sfs*12|1|0.35|ENSG00000166670|chr11:102779664-102779664|T/-|frameshift_variant MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2657470703125 2 521.763832 1041.51311 0.28181 0.00014704 0.42257 0.00022048 0.70438 0.00036752 521.7639622740902 75.822 0.82789 72.188 71.749 72.577 -3.6337 58 23 3 0 0 0 0.069961 4 14395 14344;14395;14442;14445 69.105 22.024 1 19955000 4012 5740 2359 2362 4378;4379;4380;4381 4379 -0.00598536310712916 AQRDTYLI 8 Unmodified _AQRDTYLI_ 0 0 0 REV__ENST00000475306.1_1_1:24410803-24434643:-|nuORF REV__ENST00000475306.1_1_1:24410803-24434643:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.263671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 73.328 1 70.017 69.517 70.517 -3.3107 0 0 0 0.22628 1 14297 14297 20.454 5.6154 1 + 4013 16683 2360 2363 4382 4382 0.023328834091330464 AQRGGGFG 8 Unmodified _AQRGGGFG_ 0 0 0 REV__ENST00000331563.6_1_11:394234-394303:+|nuORF REV__ENST00000331563.6_1_11:394234-394303:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21881103515625 2 375.188094 748.361636 NaN NaN NaN NaN NaN NaN NaN 54.986 1 54.986 54.486 55.486 0 0 0 0 0.23899 1 10487 10487 1.3295 0 1 + + 4014 13552 2361 2364 4383 4383 -0.022610528278960373 AQRGKEMVY 9 Unmodified _AQRGKEMVY_ 0 0 0 REV__FBP2|p.R16C|2|0.26|ENSG00000130957|chr9:94593681-94593681|G/A|missense_variant REV__FBP2|p.R16C|2|0.26|ENSG00000130957|chr9:94593681-94593681|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2760620117188 2 541.276583 1080.53861 NaN NaN NaN NaN NaN NaN NaN 148.32 1 148.32 147.82 148.82 0 0 0 0 0.19669 1 29681 29681 1.2148 1.087 1 + 4015 16043 2362 2365 4384 4384 0.0015661494005598797 AQRITAELKRY 11 Unmodified _AQRITAELKRY_ 0 0 0 ENSG00000119547|ENST00000491143|ONECUT2;ENSG00000205922|ENST00000382349|ONECUT3 ENSG00000119547|ENST00000491143|ONECUT2 ENSG00000119547|ENST00000491143|ONECUT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 674.8880615234375 2 674.888418 1347.76228 NaN NaN NaN NaN NaN NaN NaN 23.385 1 21.932 21.432 22.432 -1.4535 0 0 0 0.23698 1 3773 3773 1.4819 0 1 4016 3085 2363 2366 4385 4385 0.10231226645828428 AQRLERYLHPW 11 Unmodified _AQRLERYLHPW_ 0 0 0 REV__sp|Q6SW63|UL79_HCMVMProteinUL79OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL79PE=3SV=1 REV__sp|Q6SW63|UL79_HCMVMProteinUL79OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL79PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2638854980469 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 59.203 1 59.203 58.703 59.703 0 0 0 0 0.22632 1 11342 11342 0.58532 0.41332 1 + 4017 24708 2364 2367 4386 4386 0.0583404873998461 AQSQWLTQ 8 Unmodified _AQSQWLTQ_ 0 0 0 ENST00000430330.6_1_1:53504688-53513583:+|nuORF;nc|ENSG00000116171|P22307-5|SCP2 ENST00000430330.6_1_1:53504688-53513583:+|nuORF ENST00000430330.6_1_1:53504688-53513583:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23907470703125 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 145.95 1 145.95 145.45 146.45 0 0 0 0 0.21486 1 29179 29179 11.64 2.2929 1 4018 9773 2365 2368 4387 4387 -0.015319761420073519 AQTADGSHYH 10 Unmodified _AQTADGSHYH_ 0 0 0 nc|ENSG00000160201|Q01081-3|U2AF1 nc|ENSG00000160201|Q01081-3|U2AF1 nc|ENSG00000160201|Q01081-3|U2AF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7789306640625 2 543.733594 1085.45264 NaN NaN NaN NaN NaN NaN NaN 144.08 1 144.08 143.58 144.58 0 0 0 0 2.8426 1 28776 28776 0.043787 0 1 4019 12405 2366 2369 4388 4388 -0.08667253641101524 AQTDGQQSQ 9 Unmodified _AQTDGQQSQ_ 0 0 0 nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2;nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2;ENST00000491982.1_1_22:36174014-36236265:-|nuORF nc|ENSG00000100320|O43251-3|RBFOX2 nc|ENSG00000100320|O43251-3|RBFOX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78167724609375 2 481.712328 961.410102 NaN NaN NaN NaN NaN NaN NaN 151.38 1 146.63 146.13 147.13 -4.7523 0 0 0 0.19343 1 30073 30073 1.6919 1.4404 1 4020 1952 2367 2370 4389 4389 -0.07214648769331689 AQVEEALRGN 10 Unmodified _AQVEEALRGN_ 0 0 0 tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1 tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1 tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7816772460938 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 97.498 1 97.498 96.998 97.998 0 0 0 0 2.8426 1 19108 19108 6.6304 5.7854 1 4021 25898 2368 2371 4390 4390 0.00718465461204687 AQVTVEQV 8 Unmodified _AQVTVEQV_ 0 0 0 nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131 nc|ENSG00000172262|P52739-2|ZNF131 nc|ENSG00000172262|P52739-2|ZNF131 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2358703613281 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.524 1 60.527 60.027 61.027 -2.9975 0 0 0 0.18898 1 12277 12277 28.487 3.813 1 4022 6203 2369 2372 4391 4391 0.019015056264720442 AQYEDIAQK 9 Unmodified _AQYEDIAQK_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.26416015625 2 533.264196 1064.51384 0.026419 1.4089E-05 -0.052294 -2.7887E-05 -0.025875 -1.3798E-05 533.2641222998416 33.781 0.44715 31.464 31.252 31.699 -2.3175 30 12 3 0 0 0 0.010532 2 6207 6161;6207 103.35 3.8811 1 2465900 + 4023 5847 2370 2373 4392;4393 4393 -0.015837416616705013 AQYEDIAQK 9 Unmodified _AQYEDIAQK_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2626953125 2 533.264196 1064.51384 0.59244 0.00031593 -1.792 -0.00095562 -1.1996 -0.0006397 533.2633850038093 33.661 0.41884 31.514 31.288 31.707 -2.1468 15 11 2 0 0 0 0.41266 1 5866 5866 24.991 3.454 1 472010 + 4024 5847 2370 2373 4394 4394 -0.015837416616705013 AQYEDIAQK 9 Unmodified _AQYEDIAQK_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27490234375 2 533.264196 1064.51384 0.44829 0.00023906 -0.60661 -0.00032348 -0.15832 -8.4427E-05 533.2637010871246 33.748 0.35059 31.532 31.319 31.67 -2.2158 13 9 2 0 0 0 0.41266 3 5858 5858;5866;5913 24.991 3.454 1 646190 + 4025 5847 2370 2373 4395;4396;4397 4395 -0.015837416616705013 AQYELEKRFYH 11 Unmodified _AQYELEKRFYH_ 0 0 0 REV__ENST00000473338.1_1_2:106710484-106713932:-|nuORF REV__ENST00000473338.1_1_2:106710484-106713932:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.373291015625 2 742.370058 1482.72556 NaN NaN NaN NaN NaN NaN NaN 23.48 1 23.48 22.98 23.98 0 0 0 0 0.23634 1 4005 4005 3.2813 0.28607 1 + 4026 22071 2371 2374 4398 4398 0.0035093002927624184 AQYQFPLL 8 Unmodified _AQYQFPLL_ 0 0 0 REV__ATN1|p.P255Hfs*43|3|0.56|ENSG00000111676|chr12:6936026-6936026|C/-|frameshift_variant REV__ATN1|p.P255Hfs*43|3|0.56|ENSG00000111676|chr12:6936026-6936026|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26519775390625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 116.95 1 116.95 116.45 117.45 0 0 0 0 0.22674 1 23034 23034 14.838 10.122 1 + 4027 13150 2372 2375 4399 4399 0.027349729028628644 ARAHANPGL 9 Unmodified _ARAHANPGL_ 0 0 0 ENSG00000183134|ENST00000332539|PTGDR2 ENSG00000183134|ENST00000332539|PTGDR2 ENSG00000183134|ENST00000332539|PTGDR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.74713134765625 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 126.44 1 121.64 121.14 122.14 -4.7958 0 0 0 0.23508 1 24271 24271 7.2892 0.93513 1 4028 6831 2373 2376 4400 4400 0.02662569534618342 ARAKTQHL 8 Unmodified _ARAKTQHL_ 0 0 0 REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant;REV__ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.95977783203125 3 308.850643 923.530098 -0.21937 -6.7752E-05 0.037518 1.1588E-05 -0.18185 -5.6164E-05 308.8506462858803 20.829 0.41156 19.445 19.202 19.614 -1.3847 29 11 3 0 0 0 1.0267 1 3226 3226 3.5965 0 1 2317900 + 4029 25559;25562 2374 2377 4401 4401 0.0652742908575874 ARAKTQHL 8 Unmodified _ARAKTQHL_ 0 0 0 REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant;REV__ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 308.850643 923.530098 -0.52226 -0.0001613 0.49518 0.00015294 -0.027081 -8.364E-06 308.8507833206693 19.403 0.45086 19.403 19.172 19.623 0 -0.037889 0.00033332 NaN 3.5965 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2920300 + 4030 25559;25562 2374 2377 0.0652742908575874 ARAKTQHL 8 Unmodified _ARAKTQHL_ 0 0 0 REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant;REV__ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 308.850643 923.530098 0.1046 3.2307E-05 -0.17264 -5.3321E-05 -0.06804 -2.1014E-05 308.8505318664027 20.95 0.42571 19.476 19.24 19.665 -1.4742 0.034482 -0.00028545 NaN 3.5965 28 11 4 NaN NaN NaN NaN 0 NaN NaN 0 2930300 + 4031 25559;25562 2374 2377 0.0652742908575874 ARATGWRP 8 Unmodified _ARATGWRP_ 0 0 0 ENST00000517894.5_3_8:143558624-143561092:+|nuORF ENST00000517894.5_3_8:143558624-143561092:+|nuORF ENST00000517894.5_3_8:143558624-143561092:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 457.7525329589844 2 457.751393 913.488233 NaN NaN NaN NaN NaN NaN NaN 88.953 1 85.16 84.66 85.66 -3.7926 0 0 0 0.22757 1 17404 17404 0.68139 0 1 4032 10800 2375 2378 4402 4402 0.028028733972291775 ARCAADPLG 9 Unmodified _ARCAADPLG_ 0 0 0 ENST00000376566.8_1_X:48755271-48755857:+|nuORF;ENST00000473764.5_1_X:48755764-48755857:+|nuORF;ENST00000247140.8_1_X:48755266-48755857:+|nuORF ENST00000376566.8_1_X:48755271-48755857:+|nuORF ENST00000376566.8_1_X:48755271-48755857:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2161865234375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 82.216 1 78.659 78.159 79.159 -3.557 0 0 0 0.23508 1 16066 16066 10.824 2.9138 1 4033 9253 2376 2379 4403 4403 -0.023875877026057424 ARCHRLPPP 9 Unmodified _ARCHRLPPP_ 0 0 0 ENST00000393409.2_1_3:126753244-126753730:+|nuORF ENST00000393409.2_1_3:126753244-126753730:+|nuORF ENST00000393409.2_1_3:126753244-126753730:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.69287109375 2 523.787453 1045.56035 0.11797 6.1792E-05 -2.3301 -0.0012205 -2.2121 -0.0011587 523.7868032617583 26.724 0.33772 24.802 24.609 24.947 -1.9222 14 9 2 0 0 0 0.56979 1 4444 4444 1.2148 0.80657 1 319570 4034 9394 2377 2380 4404 4404 0.039394644792764666 ARCHRLPPP 9 Unmodified _ARCHRLPPP_ 0 0 0 ENST00000393409.2_1_3:126753244-126753730:+|nuORF ENST00000393409.2_1_3:126753244-126753730:+|nuORF ENST00000393409.2_1_3:126753244-126753730:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.787453 1045.56035 -0.4009 -0.00020998 -1.097 -0.00057461 -1.4979 -0.0007846 523.787122502356 26.507 0.24697 24.872 24.719 24.966 -1.6347 0.046708 0.00068094 NaN 1.2148 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 647260 4035 9394 2377 2380 0.039394644792764666 ARCLIRSLLRR 11 Unmodified _ARCLIRSLLRR_ 0 0 0 ENSG00000173334|ENST00000311922|TRIB1;nc|ENSG00000173334|Q96RU8-2|TRIB1 ENSG00000173334|ENST00000311922|TRIB1 ENSG00000173334|ENST00000311922|TRIB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 678.5150146484375 2 678.922072 1355.82959 NaN NaN NaN NaN NaN NaN NaN 169.94 1 165.15 164.65 165.65 -4.7898 0 0 0 0.22632 1 34459 34459 0.03141 0 1 4036 6288 2378 2381 4405 4405 0.1659097837580248 ARDKEELFQYL 11 Unmodified _ARDKEELFQYL_ 0 0 0 REV__ENST00000529654.5_1_8:145616841-145618286:+|nuORF REV__ENST00000529654.5_1_8:145616841-145618286:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 471.2458801269531 3 471.245386 1410.71433 NaN NaN NaN NaN NaN NaN NaN 65.419 1 65.419 64.919 65.919 0 0 0 0 0.22632 1 12614 12614 0.026206 0 1 + 4037 18329 2379 2382 4406 4406 0.02540107935146807 ARDPGARVL 9 Unmodified _ARDPGARVL_ 0 0 0 nc|ENSG00000156709|O95831-4|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1;ENSG00000156709|ENST00000287295|AIFM1 nc|ENSG00000156709|O95831-4|AIFM1 nc|ENSG00000156709|O95831-4|AIFM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.1772766113281 3 318.854164 953.540663 -0.43704 -0.00013935 0.12103 3.8591E-05 -0.31601 -0.00010076 318.8541311932269 28.72 0.45845 28.72 28.491 28.949 0 24 12 3 0 0 0 0.10537 1 5108 5108 51.415 27.625 1 1564900 4038 5099 2380 2383 4407 4407 0.0620341174017085 ARDPGARVL 9 Unmodified _ARDPGARVL_ 0 0 0 nc|ENSG00000156709|O95831-4|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1;ENSG00000156709|ENST00000287295|AIFM1 nc|ENSG00000156709|O95831-4|AIFM1 nc|ENSG00000156709|O95831-4|AIFM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 318.854164 953.540663 0.32375 0.00010323 -0.74937 -0.00023894 -0.42561 -0.00013571 318.85387946780384 30.574 0.31823 28.681 28.522 28.84 -1.8928 0.010654 -0.00049638 NaN 51.415 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 921170 4039 5099 2380 2383 0.0620341174017085 ARDPGARVL 9 Unmodified _ARDPGARVL_ 0 0 0 nc|ENSG00000156709|O95831-4|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1;ENSG00000156709|ENST00000287295|AIFM1 nc|ENSG00000156709|O95831-4|AIFM1 nc|ENSG00000156709|O95831-4|AIFM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 318.854164 953.540663 -0.15755 -5.0236E-05 -0.16809 -5.3597E-05 -0.32564 -0.00010383 318.8540702770792 30.685 0.38461 28.61 28.429 28.813 -2.0743 -0.060305 5.9644E-05 NaN 51.415 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 754710 4040 5099 2380 2383 0.0620341174017085 AREEKHKRSQC 11 Unmodified _AREEKHKRSQC_ 0 0 0 REV__ENST00000546412.1_1_14:26305080-26305155:-|nuORF REV__ENST00000546412.1_1_14:26305080-26305155:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.225341796875 3 457.901848 1370.68372 0.16462 7.5379E-05 -1.5799 -0.00072346 -1.4153 -0.00064808 457.9014797152784 15.26 0.16894 15.26 15.161 15.33 0 8 4 2 0 0 0 0.96173 1 2296 2296 4.1166 1.8639 1 332960 + 4041 22895 2381 2384 4408 4408 0.013200510691149248 AREPPPPPP 9 Unmodified _AREPPPPPP_ 0 0 0 REV__ENSG00000061455|ENST00000407847|PRDM6 REV__ENSG00000061455|ENST00000407847|PRDM6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7229919433594 2 479.261259 956.507966 -0.0024048 -1.1525E-06 -0.086895 -4.1645E-05 -0.0893 -4.2798E-05 479.2611619640799 24.936 7.2366 24.936 23.589 30.825 0 499 209 4 0 0 0 0.028313 1 4318 4318 96.285 34.927 1 47405000 + 4042 14150 2382 2385 4409 4409 0.027972046173204035 AREPPPPPP 9 Unmodified _AREPPPPPP_ 0 0 0 REV__ENSG00000061455|ENST00000407847|PRDM6 REV__ENSG00000061455|ENST00000407847|PRDM6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7264709472656 2 479.261259 956.507966 0.15955 7.6466E-05 -0.23062 -0.00011053 -0.071072 -3.4062E-05 479.26109025462694 27.167 9.6507 25.245 23.329 32.98 -1.9222 574 276 4 0 0 0 0.029966 1 4461 4461 96.285 40.108 1 52154000 + 4043 14150 2382 2385 4410 4410 0.027972046173204035 ARERRWRRQRQ 11 Unmodified _ARERRWRRQRQ_ 0 0 0 REV__ENST00000370033.8_1_10:103799782-103815930:-|nuORF REV__ENST00000370033.8_1_10:103799782-103815930:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.271728515625 3 533.305078 1596.89341 NaN NaN NaN NaN NaN NaN NaN 65.44 1 62.157 61.657 62.657 -3.2832 0 0 0 0.22632 1 12302 12302 0.50596 0 1 + 4044 20971 2383 2386 4411 4411 0.11883474857086185 ARFIYVKGIG 10 Unmodified _ARFIYVKGIG_ 0 0 0 REV__ENSG00000144668|ENST00000264741|ITGA9 REV__ENSG00000144668|ENST00000264741|ITGA9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21807861328125 3 375.225598 1122.65496 NaN NaN NaN NaN NaN NaN NaN 43.784 1 41.036 40.536 41.536 -2.7475 0 0 0 2.8426 1 7916 7916 0.013265 0 1 + 4045 16794 2384 2387 4412 4412 0.09854301502286944 ARFRKDIKVK 10 Unmodified _ARFRKDIKVK_ 0 0 0 REV__ENSG00000089048|ENST00000617257|ESF1 REV__ENSG00000089048|ENST00000617257|ESF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7571411132812 2 630.898589 1259.78262 NaN NaN NaN NaN NaN NaN NaN 122.49 1 117.96 117.46 118.46 -4.5305 0 0 0 2.8426 1 23581 23581 0.26539 0.25212 1 + 4046 14517 2385 2388 4413 4413 0.16312442096295854 ARGTVVLRVRP 11 Unmodified _ARGTVVLRVRP_ 0 0 0 nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 612.5519409179688 2 612.388388 1222.76222 NaN NaN NaN NaN NaN NaN NaN 171.63 1 166.75 166.25 167.25 -4.873 0 0 0 0.23087 1 34023 34023 7.609 1.4032 1 4047 4256 2386 2389 4414 4414 0.15975271436491312 ARGVIRML 8 Unmodified _ARGVIRML_ 0 0 0 ENSG00000119927|ENST00000348367|GPAM ENSG00000119927|ENST00000348367|GPAM ENSG00000119927|ENST00000348367|GPAM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2365417480469 2 458.281472 914.548391 -0.14836 -6.7992E-05 -0.18179 -8.3313E-05 -0.33016 -0.00015131 458.28158097670536 75.552 0.38162 72.137 71.951 72.332 -3.4151 13 10 2 0 0 0 0.69702 1 14751 14751 21.799 6.9612 1 1302300 4048 3107 2387 2390 4415 4415 0.08769847736107295 ARGWRKIPAEH 11 Unmodified _ARGWRKIPAEH_ 0 0 0 ENST00000464344.6_1_2:242014984-242028621:-|nuORF ENST00000464344.6_1_2:242014984-242028621:-|nuORF ENST00000464344.6_1_2:242014984-242028621:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 660.8695678710938 2 660.86782 1319.72109 NaN NaN NaN NaN NaN NaN NaN 168.34 1 163.45 162.95 163.95 -4.8916 0 0 0 0.21121 1 33181 33181 10.016 9.7177 1 4049 10110 2388 2391 4416 4416 0.07401510397062339 ARHHKELALGL 11 Unmodified _ARHHKELALGL_ 0 0 0 REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1 REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7647705078125 2 622.864746 1243.71494 NaN NaN NaN NaN NaN NaN NaN 61.274 1 58.313 57.813 58.813 -2.9614 0 0 0 0.23264 1 11806 11806 6.2058 0 1 + 4050 25265 2389 2392 4417 4417 0.10282992165480209 ARHNLEHAF 9 Unmodified _ARHNLEHAF_ 0 0 0 nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB nc|ENSG00000070182|P11277-3|SPTB nc|ENSG00000070182|P11277-3|SPTB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7791748046875 2 547.778139 1093.54173 NaN NaN NaN NaN NaN NaN NaN 22.199 1 20.478 19.978 20.978 -1.7211 0 0 0 0.19674 1 3514 3514 1.2148 0.94944 1 4051 1427 2390 2393 4418 4418 -0.001303738909200547 ARIAPNWPKA 10 Unmodified _ARIAPNWPKA_ 0 0 0 REV__nc|ENSG00000128487|Q5M775-2|SPECC1 REV__nc|ENSG00000128487|Q5M775-2|SPECC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2117614746094 3 375.217214 1122.62981 NaN NaN NaN NaN NaN NaN NaN 12.769 1 11.759 11.259 12.259 -1.0098 0 0 0 0.22588 1 1802 1802 12.175 1.3752 1 + 4052 15920 2391 2394 4419 4419 0.07340246699709496 ARIQPFKRRRR 11 Unmodified _ARIQPFKRRRR_ 0 0 0 REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3875122070312 2 742.463284 1482.91202 NaN NaN NaN NaN NaN NaN NaN 139.85 1 134.9 134.4 135.4 -4.952 0 0 0 0.22632 1 26910 26910 0.026206 0 1 + 4053 20599 2392 2395 4420 4420 0.18987636498945903 ARKKLKKFTTL 11 Unmodified _ARKKLKKFTTL_ 0 0 0 nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM nc|ENSG00000257335|O43451-1|MGAM nc|ENSG00000257335|O43451-1|MGAM MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.22247314453125 4 334.222412 1332.86054 -0.62183 -0.00020783 3.3254 0.0011114 2.7035 0.00090359 334.4751892619853 92.473 0.48332 92.473 92.126 92.609 0 17 13 2 0 0 0 0.82392 1 18076 18076 0.45452 0.35968 1 591060 4054 7944 2393 2396 4421 4421 0.20742454961691692 ARKLELLAY 9 Unmodified _ARKLELLAY_ 0 0 0 REV__ENSG00000146250|ENST00000369700|PRSS35 REV__ENSG00000146250|ENST00000369700|PRSS35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2169189453125 3 359.553603 1075.63898 -0.25172 -9.0506E-05 0.3449 0.00012401 0.093187 3.3506E-05 359.5537152885046 94.057 1.0309 90.067 89.387 90.418 -3.9907 51 20 3 0 0 0 0.62314 1 18450 18450 11.495 3.3392 1 5474200 + 4055 16882 2394 2397 4422 4422 0.1041859526535518 ARKNGVKALF 10 Unmodified _ARKNGVKALF_ 0 0 0 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.1080627441406 3 368.560981 1102.66111 0.1069 3.94E-05 -0.071052 -2.6187E-05 0.035851 1.3213E-05 368.56091016825377 45.296 0.66824 45.296 44.92 45.588 0 49 18 4 0 0 0 1.1276 1 8569 8569 6.6304 6.6304 1 7664400 4056 25957 2395 2398 4423 4423 0.11388819733770106 ARKNGVKALF 10 Unmodified _ARKNGVKALF_ 0 0 0 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 368.560981 1102.66111 -0.3193 -0.00011768 0.28564 0.00010528 -0.033653 -1.2403E-05 368.56105974792837 48.037 0.67673 45.168 44.842 45.519 -2.869 -0.040138 -1.6079E-05 NaN 6.6304 58 18 4 NaN NaN NaN NaN 0 NaN NaN 0 7256900 4057 25957 2395 2398 0.11388819733770106 ARKNGVKALF 10 Unmodified _ARKNGVKALF_ 0 0 0 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 368.560981 1102.66111 0.015116 5.5712E-06 0.020709 7.6325E-06 0.035825 1.3204E-05 368.56092469915626 48.173 0.69968 45.231 44.899 45.599 -2.9421 0.022958 -0.00030901 NaN 6.6304 61 19 4 NaN NaN NaN NaN 0 NaN NaN 0 6987000 4058 25957 2395 2398 0.11388819733770106 ARKNGVKALF 10 Unmodified _ARKNGVKALF_ 0 0 0 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 368.560981 1102.66111 -0.77193 -0.0002845 0.74349 0.00027402 -0.028437 -1.0481E-05 368.56120297194775 48.087 0.83489 45.137 44.844 45.679 -2.9499 -0.070638 0.00049016 NaN 6.6304 63 23 4 NaN NaN NaN NaN 0 NaN NaN 0 7036400 4059 25957 2395 2398 0.11388819733770106 ARKVEKWKLDS 11 Unmodified _ARKVEKWKLDS_ 0 0 0 REV__nc|ENSG00000078304|Q13362-2|PPP2R5C REV__nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7584533691406 3 453.929621 1358.76703 -0.11049 -5.0154E-05 0.50336 0.00022849 0.39287 0.00017833 454.26415726485646 65.996 0.85986 62.949 62.578 63.437 -3.047 49 24 3 0 0 0 0.89074 1 12800 12800 1.4551 0 1 1496400 + 4060 14378 2396 2399 4424 4424 0.10200110788605343 ARKVEKWKLDS 11 Unmodified _ARKVEKWKLDS_ 0 0 0 REV__nc|ENSG00000078304|Q13362-2|PPP2R5C REV__nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 453.929621 1358.76703 -0.063165 -2.8672E-05 0.17024 7.7275E-05 0.10707 4.8603E-05 454.26393159460474 63.214 0.7721 63.214 62.73 63.502 0 0.15485 -0.00014076 NaN 1.4551 50 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3034800 + 4061 14378 2396 2399 0.10200110788605343 ARKVEKWKLDS 11 Unmodified _ARKVEKWKLDS_ 0 0 0 REV__nc|ENSG00000078304|Q13362-2|PPP2R5C REV__nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 453.929621 1358.76703 0.27394 0.00012435 0.14961 6.7913E-05 0.42355 0.00019226 454.2639064592697 66.306 1.1885 63.015 62.189 63.377 -3.2914 -0.044784 -0.00016884 NaN 1.4551 63 33 3 NaN NaN NaN NaN 0 NaN NaN 0 2050000 + 4062 14378 2396 2399 0.10200110788605343 ARKWREQILLL 11 Unmodified _ARKWREQILLL_ 0 0 0 REV__ENST00000520874.1_1_8:108995475-108995910:+|nuORF REV__ENST00000520874.1_1_8:108995475-108995910:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 477.298095703125 3 475.961144 1424.8616 -0.11542 -5.4937E-05 -0.018822 -8.9587E-06 -0.13425 -6.3896E-05 475.96122345272676 142.71 2.3842 142.71 142.27 144.65 0 252 68 6 0 0 0 0.65515 1 28683 28683 3.0723 1.6648 1 962900000 + 4063 16982 2397 2400 4425 4425 0.16616669330619516 ARKWREQILLL 11 Unmodified _ARKWREQILLL_ 0 0 0 REV__ENST00000520874.1_1_8:108995475-108995910:+|nuORF REV__ENST00000520874.1_1_8:108995475-108995910:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 477.29718017578125 3 475.961144 1424.8616 0.069665 3.3158E-05 -0.30205 -0.00014376 -0.23238 -0.0001106 475.96114528750667 146.89 2.1793 142.21 141.78 143.96 -4.6868 276 62 6 0 0 0 0.65515 1 29328 29328 3.0723 3.0723 1 1229800000 + 4064 16982 2397 2400 4426 4426 0.16616669330619516 ARKWREQILLL 11 Unmodified _ARKWREQILLL_ 0 0 0 REV__ENST00000520874.1_1_8:108995475-108995910:+|nuORF REV__ENST00000520874.1_1_8:108995475-108995910:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 475.961144 1424.8616 0.086015 4.094E-05 -0.26512 -0.00012619 -0.1791 -8.5245E-05 475.9611175445102 147.44 2.4525 142.28 141.88 144.33 -5.1558 0.020356 0.00012172 NaN 3.0723 268 69 6 NaN NaN NaN NaN 0 NaN NaN 0 917690000 + 4065 16982 2397 2400 0.16616669330619516 ARKWREQILLL 11 Unmodified _ARKWREQILLL_ 0 0 0 REV__ENST00000520874.1_1_8:108995475-108995910:+|nuORF REV__ENST00000520874.1_1_8:108995475-108995910:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 475.961144 1424.8616 0.33854 0.00016113 -0.54618 -0.00025996 -0.20764 -9.8829E-05 475.9610358131216 147.29 3.1894 142.29 141.86 145.04 -5 0.032849 -0.00027961 NaN 3.0723 322 90 7 NaN NaN NaN NaN 0 NaN NaN 0 924400000 + 4066 16982 2397 2400 0.16616669330619516 ARLAVLLVLVL 11 Unmodified _ARLAVLLVLVL_ 0 0 0 REV__ENSG00000129910|ENST00000289746|CDH15 REV__ENSG00000129910|ENST00000289746|CDH15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2605590820312 2 590.413009 1178.81146 NaN NaN NaN NaN NaN NaN NaN 175.37 1 170.58 170.08 171.08 -4.7898 0 0 0 0.22632 1 35857 35857 0.094841 0 1 + 4067 15974 2398 2401 4427 4427 0.22921166672722393 ARLFKKKFN 9 Unmodified _ARLFKKKFN_ 0 0 0 REV__MYO3A|p.N727Kfs*9|1|0.22|ENSG00000095777|chr10:26128448-26128449|-/A|frameshift_variant REV__MYO3A|p.N727Kfs*9|1|0.22|ENSG00000095777|chr10:26128448-26128449|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3211059570312 2 576.356025 1150.6975 NaN NaN NaN NaN NaN NaN NaN 123.51 1 118.78 118.28 119.28 -4.731 0 0 0 0.19626 1 23727 23727 0.073264 0.069883 1 + 4068 23903 2399 2402 4428 4428 0.12817696630531827 ARLSGLFKA 9 Unmodified _ARLSGLFKA_ 0 0 0 REV__nc|ENSG00000114650|Q12770-3|SCAP REV__nc|ENSG00000114650|Q12770-3|SCAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7802734375 2 481.792727 961.5709 NaN NaN NaN NaN NaN NaN NaN 160.01 1 155.21 154.71 155.71 -4.7952 0 0 0 0.19343 1 31817 31817 1.6919 0.8167 1 + 4069 15381 2400 2403 4429 4429 0.08857770405370502 ARPGSVAA 8 Unmodified _ARPGSVAA_ 0 0 0 REV__ENST00000396953.6_2_3:12882541-12882643:-|nuORF REV__ENST00000396953.6_2_3:12882541-12882643:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 364.8430480957031 2 364.70612 727.397687 -0.30312 -0.00011055 -0.33731 -0.00012302 -0.64043 -0.00023357 364.70618740316996 85.934 0.10651 82.207 82.154 82.26 -3.727 4 2 2 0 0 0 0.8784 1 16798 16798 0.62683 0 1 498860 + 4070 21289 2401 2404 4430 4430 0.023084043489348005 ARPLPEGVDP 10 Unmodified _ARPLPEGVDP_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 351.0708923339844 3 350.857463 1049.55056 -0.68207 -0.00023931 0.65245 0.00022892 -0.029625 -1.0394E-05 350.8576891543321 56.027 0.59045 52.851 52.381 52.971 -3.1761 34 16 4 0 0 0 0.91149 1 10346 10346 3.5871 0.85186 1 3893200 4071 7353 2402 2405 4431 4431 0.027765549548803392 ARPLPEGVDP 10 Unmodified _ARPLPEGVDP_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 350.857463 1049.55056 -0.26791 -9.3998E-05 -0.059874 -2.1007E-05 -0.32778 -0.00011501 350.8574209186138 52.906 0.39278 52.906 52.682 53.075 0 0.061394 -0.00015816 NaN 3.5871 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3582200 4072 7353 2402 2405 0.027765549548803392 ARPLPEGVDP 10 Unmodified _ARPLPEGVDP_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 350.857463 1049.55056 -0.45797 -0.00016068 0.20206 7.0894E-05 -0.25591 -8.9789E-05 350.85750560312607 55.684 0.51905 52.801 52.458 52.977 -2.8837 -0.04387 0.00011754 NaN 3.5871 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 5048100 4073 7353 2402 2405 0.027765549548803392 ARPLPEGVDP 10 Unmodified _ARPLPEGVDP_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 350.857463 1049.55056 0.069072 2.4234E-05 -0.27498 -9.6479E-05 -0.20591 -7.2244E-05 350.8573411775044 56.01 0.69777 52.821 52.32 53.018 -3.1895 -0.023941 -0.00038457 NaN 3.5871 32 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4396300 4074 7353 2402 2405 0.027765549548803392 ARPTIACLE 9 Unmodified _ARPTIACLE_ 0 0 0 ENSG00000137460|ENST00000511601|FHDC1;FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant ENSG00000137460|ENST00000511601|FHDC1 ENSG00000137460|ENST00000511601|FHDC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 325.1756896972656 3 325.176027 972.506251 NaN NaN NaN NaN NaN NaN NaN 106.28 1 101.9 101.4 102.4 -4.3764 0 0 0 0.23508 1 20382 20382 4.897 0 1 4075 4084 2403 2406 4432 4432 0.01889827537047495 ARQASEGH 8 Unmodified _ARQASEGH_ 0 0 0 nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3;nc|ENSG00000292277|Q9UJ98-2|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3 nc|ENSG00000292277|Q9UJ98|STAG3 nc|ENSG00000292277|Q9UJ98|STAG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 857.4074096679688 1 855.406754 854.399478 0.12482 0.00010677 1.0728 0.00091772 1.1977 0.0010245 855.4092633529052 54.306 1.6097 51.169 50.536 52.146 -3.1377 88 45 3 0 0 0 0.70613 1 10132 10132 13.508 0 1 51456000 4076 1379 2404 2407 4433 4433 -0.03354586633099643 ARQGAGGP 8 Unmodified _ARQGAGGP_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENST00000590599.1_1_18:77496343-77513668:+|nuORF nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5653991699219 2 357.188094 712.361636 NaN NaN NaN NaN NaN NaN NaN 46.371 1 43.53 43.03 44.03 -2.8409 0 0 0 0.21486 1 8751 8751 10.183 0.83596 1 4077 12220 2405 2408 4434 4434 -0.006050528279047285 ARQPPQPI 8 Unmodified _ARQPPQPI_ 0 0 0 nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2 nc|ENSG00000166016|Q8N961-2|ABTB2 nc|ENSG00000166016|Q8N961-2|ABTB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7597961425781 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 135.44 1 130.6 130.1 131.1 -4.8307 0 0 0 0.23025 1 26074 26074 0.62683 0 1 4078 5682 2406 2409 4435 4435 0.051766243371730525 ARQPRSSRQ 9 Unmodified _ARQPRSSRQ_ 0 0 0 ENST00000480591.5_1_7:136553878-136554046:+|nuORF ENST00000480591.5_1_7:136553878-136554046:+|nuORF ENST00000480591.5_1_7:136553878-136554046:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.0249328613281 3 362.535606 1084.58499 -0.88284 -0.00032006 -0.33531 -0.00012156 -1.2182 -0.00044163 362.5353109843553 15.1 0.20923 13.986 13.887 14.096 -1.1142 9 5 2 0 0 0 0.79204 1 2296 2296 11.495 2.5185 1 469030 4079 10359 2407 2410 4436 4436 0.04607815886356548 ARQPRSSRQ 9 Unmodified _ARQPRSSRQ_ 0 0 0 ENST00000480591.5_1_7:136553878-136554046:+|nuORF ENST00000480591.5_1_7:136553878-136554046:+|nuORF ENST00000480591.5_1_7:136553878-136554046:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 362.535606 1084.58499 -2.2937 -0.00083156 -0.20803 -7.5419E-05 -2.5018 -0.00090698 362.53498505608974 15.143 0.17898 13.933 13.852 14.031 -1.2106 -0.026423 0.00011441 NaN 11.495 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 193230 4080 10359 2407 2410 0.04607815886356548 ARRMQAQPE 9 Unmodified _ARRMQAQPE_ 0 0 0 REV__TJP2|p.R970Q|1|0.38|ENSG00000119139|chr9:69249403-69249403|G/A|missense_variant REV__TJP2|p.R970Q|1|0.38|ENSG00000119139|chr9:69249403-69249403|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7788696289062 2 543.777282 1085.54001 NaN NaN NaN NaN NaN NaN NaN 43.038 1 43.038 42.538 43.538 0 0 0 0 0.18966 1 8059 8059 0.40827 0.31342 1 + 4081 24807 2408 2411 4437 4437 0.0006624902880503214 ARRPKKSA 8 Unmodified _ARRPKKSA_ 0 0 0 ENST00000323037.4_1_7:30324678-30325005:+|nuORF ENST00000323037.4_1_7:30324678-30325005:+|nuORF ENST00000323037.4_1_7:30324678-30325005:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.1855773925781 3 305.194521 912.561733 NaN NaN NaN NaN NaN NaN NaN 101.96 1 101.96 101.46 102.46 0 0 0 0 0.21486 1 20022 20022 0.35063 0 1 4082 8724 2409 2412 4438 4438 0.10195421839694063 ARRPKKSA 8 Unmodified _ARRPKKSA_ 0 0 0 ENST00000323037.4_1_7:30324678-30325005:+|nuORF ENST00000323037.4_1_7:30324678-30325005:+|nuORF ENST00000323037.4_1_7:30324678-30325005:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.1950988769531 3 305.194521 912.561733 NaN NaN NaN NaN NaN NaN NaN 102 1 102 101.5 102.5 0 0 0 0 0.21486 1 20031 20031 0.35063 0 1 4083 8724 2409 2412 4439 4439 0.10195421839694063 ARRPVLPAQ 9 Unmodified _ARRPVLPAQ_ 0 0 0 ENST00000530934.5_1_11:67160948-67163588:+|nuORF ENST00000530934.5_1_11:67160948-67163588:+|nuORF ENST00000530934.5_1_11:67160948-67163588:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.5471496582031 3 336.541809 1006.6036 NaN NaN NaN NaN NaN NaN NaN 22.123 1 20.402 19.902 20.902 -1.7211 0 0 0 0.19636 1 3498 3498 0.40827 0.395 1 4084 10961 2410 2413 4440 4440 0.10055977528213589 ARRRREWRRWL 11 Unmodified _ARRRREWRRWL_ 0 0 0 REV__ENST00000444165.1_1_1:148853888-148854101:-|nuORF REV__ENST00000444165.1_1_1:148853888-148854101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.791259765625 3 547.653819 1639.93963 NaN NaN NaN NaN NaN NaN NaN 162.15 1 157.36 156.86 157.86 -4.7898 0 0 0 0.23698 1 32257 32257 0.45452 0.046251 1 + 4085 21734 2411 2414 4441 4441 0.14525539759188177 ARRRREWRRWL 11 Unmodified _ARRRREWRRWL_ 0 0 0 REV__ENST00000444165.1_1_1:148853888-148854101:-|nuORF REV__ENST00000444165.1_1_1:148853888-148854101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7864990234375 3 547.653819 1639.93963 NaN NaN NaN NaN NaN NaN NaN 162.36 1 157.57 157.07 158.07 -4.7898 0 0 0 0.23698 1 32308 32308 0.40827 0.32491 1 + 4086 21734 2411 2414 4442 4442 0.14525539759188177 ARRRRIWHRRW 11 Unmodified _ARRRRIWHRRW_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 550.4141235351562 3 550.325925 1647.95595 0.5322 0.00029289 0.56181 0.00030918 1.094 0.00060206 550.66135667579 162.43 0.16823 157.24 157.16 157.33 -5.1878 5 4 2 0 0 0 0.89134 1 31550 31550 0 0 1 4133200 4087 12155 2412 2415 4443 4443 0.15788665715945172 ARRRRRKFPQI 11 Unmodified _ARRRRRKFPQI_ 0 0 0 ENST00000475854.1_1_X:100914419-100914797:-|nuORF;ENST00000328766.9_1_X:100913503-100914797:-|nuORF ENST00000475854.1_1_X:100914419-100914797:-|nuORF ENST00000475854.1_1_X:100914419-100914797:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3941650390625 2 742.463284 1482.91202 NaN NaN NaN NaN NaN NaN NaN 159.53 1 154.26 153.76 154.76 -5.2712 0 0 0 0.22632 1 30953 30953 0.00056442 0 1 4088 8757 2413 2416 4444 4444 0.1898763649896864 ARRYDREWYYY 11 Unmodified _ARRYDREWYYY_ 0 0 0 REV__nc|ENSG00000179750|Q9UH17-2|APOBEC3B REV__nc|ENSG00000179750|Q9UH17-2|APOBEC3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7761840820312 3 547.591668 1639.75317 0.33005 0.00018073 4.2996 0.0023544 4.6296 0.0025351 547.5939510573669 137.11 0.16965 137.11 137 137.17 0 8 4 2 0 0 0 0.89099 1 27170 27170 0.172 0 1 2307400 + 4089 15917 2414 2417 4445 4445 -0.04111166710458747 ARRYDREWYYY 11 Unmodified _ARRYDREWYYY_ 0 0 0 REV__nc|ENSG00000179750|Q9UH17-2|APOBEC3B REV__nc|ENSG00000179750|Q9UH17-2|APOBEC3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77490234375 3 547.591668 1639.75317 NaN NaN NaN NaN NaN NaN NaN 67.698 1 64.589 64.089 65.089 -3.1086 0 0 0 0.22632 1 13134 13134 0.00056442 0 1 + 4090 15917 2414 2417 4446 4446 -0.04111166710458747 ARRYDREWYYY 11 Unmodified _ARRYDREWYYY_ 0 0 0 REV__nc|ENSG00000179750|Q9UH17-2|APOBEC3B REV__nc|ENSG00000179750|Q9UH17-2|APOBEC3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77490234375 3 547.591668 1639.75317 NaN NaN NaN NaN NaN NaN NaN 67.712 1 64.604 64.104 65.104 -3.1086 0 0 0 0.23698 1 13137 13137 0.08335 0.010087 1 + 4091 15917 2414 2417 4447 4447 -0.04111166710458747 ARRYDREWYYY 11 Unmodified _ARRYDREWYYY_ 0 0 0 REV__nc|ENSG00000179750|Q9UH17-2|APOBEC3B REV__nc|ENSG00000179750|Q9UH17-2|APOBEC3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7711791992188 3 547.591668 1639.75317 0.51579 0.00028244 3.5341 0.0019352 4.0499 0.0022177 547.5928934662754 159.81 0.14523 154.56 154.5 154.65 -5.2526 5 3 2 0 0 0 0.96216 1 31020 31020 1.3296 1.2348 1 1312000 + 4092 15917 2414 2417 4448 4448 -0.04111166710458747 ARSDKPIFTL 10 Unmodified _ARSDKPIFTL_ 0 0 0 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 384.2377014160156 3 383.220513 1146.63971 -0.038176 -1.463E-05 0.093312 3.5759E-05 0.055136 2.1129E-05 383.22052001844133 110.62 1.2667 106.39 105.78 107.04 -4.2289 120 35 5 0 0 0 0.046341 1 21276 21276 56.939 29.65 1 38996000 4093 3980 2415 2418 4449 4449 0.0722538991442434 ARSDKPIFTL 10 Unmodified _ARSDKPIFTL_ 0 0 0 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 383.220513 1146.63971 -0.55501 -0.00021269 0.57812 0.00022155 0.023104 8.8539E-06 383.22070502902454 110.84 1.18 106.42 105.85 107.03 -4.4231 0.05408 0.00029153 NaN 56.939 114 33 4 NaN NaN NaN NaN 0 NaN NaN 0 49189000 4094 3980 2415 2418 0.0722538991442434 ARSDKPIFTL 10 Unmodified _ARSDKPIFTL_ 0 0 0 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 383.220513 1146.63971 -0.14395 -5.5165E-05 0.13243 5.0749E-05 -0.011524 -4.4164E-06 383.22052806677914 110.77 1.2787 106.28 105.75 107.03 -4.4915 -0.083975 -0.00022087 NaN 56.939 121 35 5 NaN NaN NaN NaN 0 NaN NaN 0 42488000 4095 3980 2415 2418 0.0722538991442434 ARSLVKVLAMW 11 Unmodified _ARSLVKVLAMW_ 0 0 0 REV__ENSG00000181733|ENST00000641125|OR2Z1 REV__ENSG00000181733|ENST00000641125|OR2Z1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2519836425781 3 425.253159 1272.73765 NaN NaN NaN NaN NaN NaN NaN 179.37 1 174.5 174 175 -4.868 0 0 0 0.23698 1 35725 35725 1.4551 1.0469 1 + 4096 18737 2416 2419 4450 4450 0.11218875238751025 ARSYVVFI 8 Unmodified _ARSYVVFI_ 0 0 0 REV__nc|ENSG00000109790|Q96PQ7-4|KLHL5 REV__nc|ENSG00000109790|Q96PQ7-4|KLHL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7331848144531 2 477.774003 953.533452 0.44101 0.0002107 -0.27471 -0.00013125 0.1663 7.9452E-05 477.7737276449749 158.65 0.76343 153.37 153.01 153.77 -5.2711 32 20 2 0 0 0 8448 1 30752 30752 0.0082765 0 1 1652300 + 4097 23998 2417 2420 4451 4451 0.054826791397545094 ARTGSEAAR 9 Unmodified _ARTGSEAAR_ 0 0 0 REV__CAPN15|p.V945Wfs*29|1|0.18|ENSG00000103326|chr16:552700-552700|G/-|frameshift_variant REV__CAPN15|p.V945Wfs*29|1|0.18|ENSG00000103326|chr16:552700-552700|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2424621582031 2 459.741222 917.467892 0.21786 0.00010016 0.44757 0.00020577 0.66543 0.00030593 459.74150110911245 86.28 1.0488 82.33 82.047 83.096 -3.9503 44 29 2 0 0 0 0.42842 1 16527 16527 0.37959 0.37959 1 1173800 + 4098 13255 2418 2421 4452 4452 0.005856579467490519 ARVLGKTDM 9 Unmodified _ARVLGKTDM_ 0 0 0 REV__nc|ENSG00000129657|Q92503-3|SEC14L1 REV__nc|ENSG00000129657|Q92503-3|SEC14L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.0308837890625 3 330.851543 989.5328 0.04699 1.5547E-05 0.042877 1.4186E-05 0.089867 2.9733E-05 330.8514928954626 51.613 0.41501 48.568 48.333 48.748 -3.0453 18 11 2 0 0 0 0.884 1 9516 9516 0.26902 0.033176 1 1363500 + 4099 15969 2419 2422 4453 4453 0.03761516428403411 ARWISQGNY 9 Unmodified _ARWISQGNY_ 0 0 0 nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9 nc|ENSG00000163638|Q9P2N4-4|ADAMTS9 nc|ENSG00000163638|Q9P2N4-4|ADAMTS9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7753295898438 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 85.125 1 85.125 84.625 85.625 0 0 0 0 0.20294 1 16611 16611 22.736 8.8302 1 4100 5451 2420 2423 4454 4454 -0.012531959850548446 ARWKKWGF 8 Unmodified _ARWKKWGF_ 0 0 0 ENSG00000137875|ENST00000260442|BCL2L10 ENSG00000137875|ENST00000260442|BCL2L10 ENSG00000137875|ENST00000260442|BCL2L10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016906738281 3 360.203016 1077.58722 NaN NaN NaN NaN NaN NaN NaN 75.337 1 71.922 71.422 72.422 -3.4151 0 0 0 0.21486 1 14694 14694 4.3292 0.13973 1 4101 4124 2421 2424 4455 4455 0.051528963621194634 ASADDIKKAY 10 Unmodified _ASADDIKKAY_ 0 0 0 ENST00000477917.5_1_2:220144555-220145531:+|nuORF;ENST00000480537.5_1_2:220144555-220146923:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENSG00000135924|ENST00000336576|DNAJB2 ENST00000477917.5_1_2:220144555-220145531:+|nuORF ENST00000477917.5_1_2:220144555-220145531:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2798461914062 2 541.279846 1080.54514 -0.14728 -7.9718E-05 0.17418 9.4282E-05 0.026906 1.4564E-05 541.2799241179563 24.682 0.65038 22.828 22.606 23.256 -1.8534 35 18 2 0 0 0 0.14103 1 4057 4057 49.554 1.9599 1 5480900 4102 3967 2422 2425 4456 4456 0.008088313724329055 ASADPDNLKY 10 Unmodified _ASADPDNLKY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7725830078125 2 547.261653 1092.50875 -0.038109 -2.0856E-05 -3.3823 -0.001851 -3.4204 -0.0018719 547.7592574218947 53.983 0.31266 51.099 50.803 51.116 -2.8837 10 8 2 0 0 0 0.61743 1 10255 10255 29.841 9.426 1 2786300 4103 5117 2423 2426 4457 4457 -0.03380045524295383 ASAITGYLSY 10 Unmodified _ASAITGYLSY_ 0 0 0 ENST00000486372.1_1_9:132565440-132566668:+|nuORF;ENSG00000136816|ENST00000259339|TOR1B ENST00000486372.1_1_9:132565440-132566668:+|nuORF ENST00000486372.1_1_9:132565440-132566668:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6912231445312 2 523.263665 1044.51278 0.18958 9.9201E-05 -1.1961 -0.00062587 -1.0065 -0.00052667 523.2628721776239 132.05 0.48395 132.05 131.64 132.13 0 20 13 2 0 0 0 0.85223 1 26082 26082 13.042 2.9685 1 3891500 4104 4039 2424 2427 4458 4458 -0.0076995603058094275 ASAITGYLSY 10 Unmodified _ASAITGYLSY_ 0 0 0 ENST00000486372.1_1_9:132565440-132566668:+|nuORF;ENSG00000136816|ENST00000259339|TOR1B ENST00000486372.1_1_9:132565440-132566668:+|nuORF ENST00000486372.1_1_9:132565440-132566668:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6981201171875 2 523.263665 1044.51278 -0.53965 -0.00028238 0.51452 0.00026923 -0.025126 -1.3148E-05 523.2639271129902 137.17 0.63519 132.24 131.91 132.55 -4.9216 28 17 2 0 0 0 0.2022 1 26373 26373 71.922 24.174 1 4387900 4105 4039 2424 2427 4459 4459 -0.0076995603058094275 ASALALNSVTV 11 Unmodified _ASALALNSVTV_ 0 0 0 ENST00000458296.1_1_6:32812581-32813517:+|nuORF ENST00000458296.1_1_6:32812581-32813517:+|nuORF ENST00000458296.1_1_6:32812581-32813517:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6917114257812 2 523.298039 1044.58152 -0.30925 -0.00016183 0.31752 0.00016616 0.0082733 4.3294E-06 523.2981595254373 92.167 0.69261 88.073 87.74 88.433 -4.0946 53 19 4 0 0 0 0.26607 1 17555 17555 51.415 1.8609 1 15128000 4106 10044 2425 2428 4460 4460 0.061017082691250835 ASAPAALLCL 10 Unmodified _ASAPAALLCL_ 0 0 0 REV__CTSD|p.Q90Sfs*43|1|0.38|ENSG00000117984|chr11:1759600-1759600|G/-|frameshift_variant REV__CTSD|p.Q90Sfs*43|1|0.38|ENSG00000117984|chr11:1759600-1759600|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2586364746094 2 465.259871 928.505189 NaN NaN NaN NaN NaN NaN NaN 162.57 1 157.78 157.28 158.28 -4.7898 0 0 0 0.22588 1 32356 32356 7.2892 1.5288 1 + 4107 13611 2426 2429 4461 4461 0.03807613168157786 ASAVWRGRY 9 Unmodified _ASAVWRGRY_ 0 0 0 REV__MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant REV__MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.280029296875 2 533.283057 1064.55156 NaN NaN NaN NaN NaN NaN NaN 63.983 1 60.986 60.486 61.486 -2.9975 0 0 0 0.22962 1 12368 12368 14.838 1.3304 1 + 4108 18657 2427 2430 4462 4462 0.021868141144750552 ASAVWRGRY 9 Unmodified _ASAVWRGRY_ 0 0 0 REV__MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant REV__MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2821044921875 2 533.283057 1064.55156 0.32522 0.00017344 -2.5334 -0.001351 -2.2082 -0.0011776 533.2817450740397 64.077 0.41419 60.821 60.468 60.882 -3.2567 15 11 2 0 0 0 0.62102 1 12031 12031 11.64 0.14559 1 1053200 + 4109 18657 2427 2430 4463 4463 0.021868141144750552 ASDALDKIRY 10 Unmodified _ASDALDKIRY_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000282100|Q58FF6|HSP90AB4P ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.318359375 2 576.306395 1150.59824 0.36972 0.00021307 -0.3507 -0.00020211 0.019018 1.096E-05 576.3060511005199 74.197 0.72634 74.197 73.771 74.497 0 48 20 3 0 0 0 3.7429E-07 3 14393 14317;14393;14403 146.68 83.452 1 5953700 4110 1874 2428 2431 4464;4465;4466 4465 0.02896209155096585 ASDALDKIRY 10 Unmodified _ASDALDKIRY_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000282100|Q58FF6|HSP90AB4P ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3202514648438 2 576.306395 1150.59824 0.0087925 5.0672E-06 -0.052366 -3.0179E-05 -0.043574 -2.5112E-05 576.3063781214914 77.519 0.95798 74.056 73.542 74.5 -3.4633 72 26 4 0 0 0 1.0176E-71 2 15146 15140;15146 220.1 137.57 1 13317000 4111 1874 2428 2431 4467;4468 4468 0.02896209155096585 ASDALDKIRY 10 Unmodified _ASDALDKIRY_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000282100|Q58FF6|HSP90AB4P ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3316650390625 2 576.306395 1150.59824 0.12598 7.2603E-05 0.131 7.5496E-05 0.25698 0.0001481 576.3064009771663 77.865 0.77646 74.099 73.68 74.457 -3.7664 61 21 4 0 0 0 4.7393E-57 3 14752 14681;14699;14752 208.35 131.53 1 13729000 4112 1874 2428 2431 4469;4470;4471 4471 0.02896209155096585 ASDALDKIRY 10 Unmodified _ASDALDKIRY_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000282100|Q58FF6|HSP90AB4P ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33935546875 2 576.306395 1150.59824 0.07274 4.192E-05 0.15896 9.1611E-05 0.2317 0.00013353 576.3064547262546 77.673 0.73308 74.014 73.642 74.375 -3.6588 55 20 3 0 0 0 4.7393E-57 1 14823 14823 208.35 127.68 1 12519000 4113 1874 2428 2431 4472 4472 0.02896209155096585 ASDALWRP 8 Unmodified _ASDALWRP_ 0 0 0 ENST00000537087.5_1_12:7053051-7053318:+|nuORF ENST00000537087.5_1_12:7053051-7053318:+|nuORF ENST00000537087.5_1_12:7053051-7053318:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22991943359375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 63.223 1 63.223 62.723 63.723 0 0 0 0 0.13047 1 12154 12154 3.5871 1.8952 1 4114 11033 2429 2432 4473 4473 0.0003634506618936939 ASDALWRP 8 Unmodified _ASDALWRP_ 0 0 0 ENST00000537087.5_1_12:7053051-7053318:+|nuORF ENST00000537087.5_1_12:7053051-7053318:+|nuORF ENST00000537087.5_1_12:7053051-7053318:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2263488769531 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 66.524 1 63.027 62.527 63.527 -3.4965 0 0 0 0.13047 1 12470 12470 3.5871 1.8952 1 4115 11033 2429 2432 4474 4474 0.0003634506618936939 ASDALWRP 8 Unmodified _ASDALWRP_ 0 0 0 ENST00000537087.5_1_12:7053051-7053318:+|nuORF ENST00000537087.5_1_12:7053051-7053318:+|nuORF ENST00000537087.5_1_12:7053051-7053318:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.230224609375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 66.477 1 63.15 62.65 63.65 -3.3268 0 0 0 0.13047 1 12516 12516 3.5871 1.8952 1 4116 11033 2429 2432 4475 4475 0.0003634506618936939 ASDDCNHAF 9 Unmodified _ASDDCNHAF_ 0 0 0 REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.265625 2 490.182349 978.350144 0.14586 7.1498E-05 -0.72928 -0.00035748 -0.58342 -0.00028598 490.18200883367643 98.534 1.3506 94.401 93.641 94.992 -4.1326 57 38 2 0 0 0 0.5428 1 19307 19307 4.897 1.31 1 3268100 + 4117 18563 2430 2433 4476 4476 -0.13989662704216244 ASDDPYGIFIF 11 Unmodified _ASDDPYGIFIF_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ADGRV1|p.S2670Rfs*9|1|0.05|ENSG00000164199|chr5:90697000-90697001|-/GCCCAAAATAATT|frameshift_variant;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ADGRV1|p.S1982Ffs*2|1|0.3|ENSG00000164199|chr5:90683859-90683860|-/T|frameshift_variant ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.760009765625 2 622.795329 1243.5761 NaN NaN NaN NaN NaN NaN NaN 76.607 1 72.974 72.474 73.474 -3.6337 0 0 0 0.20277 1 14585 14585 18.146 1.9972 1 4118 5525 2431 2434 4477 4477 -0.035940153133424246 ASDEYESQNH 10 Unmodified _ASDEYESQNH_ 0 0 0 REV__INSR|p.G1342Afs*23|1|0.12|ENSG00000171105|chr19:7117180-7117180|C/-|frameshift_variant REV__INSR|p.G1342Afs*23|1|0.12|ENSG00000171105|chr19:7117180-7117180|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2547607421875 2 590.231081 1178.44761 NaN NaN NaN NaN NaN NaN NaN 86.121 1 82.171 81.671 82.671 -3.9503 0 0 0 0.22588 1 16388 16388 10.824 0 1 + 4119 18199 2432 2435 4478 4478 -0.1344760229435451 ASDFQFCWNQ 10 Unmodified _ASDFQFCWNQ_ 0 0 0 ENST00000481242.5_1_9:130127572-130155530:+|nuORF;ENST00000496711.5_1_9:130126995-130155530:+|nuORF;nc|ENSG00000136895|Q5VVW2-2|GARNL3;nc|ENSG00000136895|Q5VVW2-5|GARNL3;ENSG00000136895|ENST00000373387|GARNL3 ENST00000481242.5_1_9:130127572-130155530:+|nuORF ENST00000481242.5_1_9:130127572-130155530:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.779541015625 2 623.253305 1244.49206 0.35392 0.00022058 -0.29634 -0.0001847 0.057581 3.5888E-05 623.2530278995464 72.477 0.79475 72.477 72.056 72.85 0 50 22 3 0 0 0 0.64074 1 14104 14104 21.537 5.3879 1 6408800 4120 4050 2433 2436 4479 4479 -0.12040869681891309 ASDFQFCWNQ 10 Unmodified _ASDFQFCWNQ_ 0 0 0 ENST00000481242.5_1_9:130127572-130155530:+|nuORF;ENST00000496711.5_1_9:130126995-130155530:+|nuORF;nc|ENSG00000136895|Q5VVW2-2|GARNL3;nc|ENSG00000136895|Q5VVW2-5|GARNL3;ENSG00000136895|ENST00000373387|GARNL3 ENST00000481242.5_1_9:130127572-130155530:+|nuORF ENST00000481242.5_1_9:130127572-130155530:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7527465820312 2 623.253305 1244.49206 0.93096 0.00058022 -0.83825 -0.00052244 0.092715 5.7785E-05 623.252777357314 76.271 0.91536 72.856 72.368 73.284 -3.4151 64 25 3 0 0 0 0.57141 1 14901 14901 38.176 2.0485 1 10807000 4121 4050 2433 2436 4480 4480 -0.12040869681891309 ASDFQFCWNQ 10 Unmodified _ASDFQFCWNQ_ 0 0 0 ENST00000481242.5_1_9:130127572-130155530:+|nuORF;ENST00000496711.5_1_9:130126995-130155530:+|nuORF;nc|ENSG00000136895|Q5VVW2-2|GARNL3;nc|ENSG00000136895|Q5VVW2-5|GARNL3;ENSG00000136895|ENST00000373387|GARNL3 ENST00000481242.5_1_9:130127572-130155530:+|nuORF ENST00000481242.5_1_9:130127572-130155530:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7820434570312 2 623.253305 1244.49206 0.31078 0.0001937 -0.025681 -1.6006E-05 0.2851 0.00017769 623.2531743313315 76.739 0.92657 72.973 72.37 73.296 -3.7664 71 26 4 0 0 0 0.40771 1 14504 14504 45.7 9.5726 1 12740000 4122 4050 2433 2436 4481 4481 -0.12040869681891309 ASDGFDGP 8 Unmodified _ASDGFDGP_ 0 0 0 REV__ENST00000428809.5_1_21:15399744-15399855:+|nuORF REV__ENST00000428809.5_1_21:15399744-15399855:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.15576171875 2 383.156126 764.297698 NaN NaN NaN NaN NaN NaN NaN 52.27 1 49.174 48.674 49.674 -3.0954 0 0 0 0.23749 1 9646 9646 0.62683 0 1 + 4123 21595 2434 2437 4482 4482 -0.09387877775509423 ASDHPIASY 9 Unmodified _ASDHPIASY_ 0 0 0 PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant;ENSG00000225190|ENST00000430334|PLEKHM1;ENST00000582201.5_1_17:62781409-62811241:-|nuORF PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23675537109375 2 480.724707 959.43486 -0.25643 -0.00012327 0.59113 0.00028417 0.3347 0.0001609 480.7249893343569 39.304 0.8451 36.754 36.295 37.14 -2.5491 58 23 4 0 0 0 0.031632 1 7286 7286 61.357 16.95 1 9545700 4124 7785 2435 2438 4483 4483 -0.0464796889596073 ASDHPIASY 9 Unmodified _ASDHPIASY_ 0 0 0 PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant;ENSG00000225190|ENST00000430334|PLEKHM1;ENST00000582201.5_1_17:62781409-62811241:-|nuORF PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2489013671875 2 480.724707 959.43486 0.052135 2.5063E-05 0.35784 0.00017202 0.40998 0.00019709 480.7248566756699 39.242 0.90506 36.8 36.336 37.241 -2.4419 65 25 4 0 0 0 0.028313 1 7002 7002 96.285 51.878 1 8776700 4125 7785 2435 2438 4484 4484 -0.0464796889596073 ASDHPIASY 9 Unmodified _ASDHPIASY_ 0 0 0 PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant;ENSG00000225190|ENST00000430334|PLEKHM1;ENST00000582201.5_1_17:62781409-62811241:-|nuORF PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2373046875 2 480.724707 959.43486 0.098451 4.7328E-05 0.30857 0.00014834 0.40702 0.00019567 480.72480924530737 39.173 0.87225 36.769 36.301 37.173 -2.4049 58 24 3 0 0 0 0.054955 1 6978 6978 61.357 21.4 1 5794500 4126 7785 2435 2438 4485 4485 -0.0464796889596073 ASDHSYELR 9 Unmodified _ASDHSYELR_ 0 0 0 nc|ENSG00000105732|Q6ZN55-2|ZNF574;ENSG00000105732|ENST00000359044|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2019958496094 3 359.836839 1076.48869 -0.20336 -7.3177E-05 0.1869 6.7255E-05 -0.016458 -5.922E-06 359.8368731725929 29.054 0.55513 29.054 28.774 29.329 0 46 15 4 0 0 0 0.73573 1 5206 5206 20.581 2.2078 1 10261000 4127 2338 2436 2439 4486 4486 -0.046497964642412626 ASDHSYELR 9 Unmodified _ASDHSYELR_ 0 0 0 nc|ENSG00000105732|Q6ZN55-2|ZNF574;ENSG00000105732|ENST00000359044|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.836839 1076.48869 0.090946 3.2726E-05 -0.016391 -5.898E-06 0.074555 2.6828E-05 359.8367890440436 31.172 0.55897 29.056 28.789 29.348 -2.1167 0.043477 -5.3568E-05 NaN 20.581 49 15 4 NaN NaN NaN NaN 0 NaN NaN 0 10375000 4128 2338 2436 2439 -0.046497964642412626 ASDHSYELR 9 Unmodified _ASDHSYELR_ 0 0 0 nc|ENSG00000105732|Q6ZN55-2|ZNF574;ENSG00000105732|ENST00000359044|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.836839 1076.48869 0.30993 0.00011152 -0.24682 -8.8816E-05 0.063103 2.2707E-05 359.8367187234529 30.96 0.56064 28.934 28.671 29.232 -2.0264 -0.0783 -0.00030232 NaN 20.581 49 15 4 NaN NaN NaN NaN 0 NaN NaN 0 10502000 4129 2338 2436 2439 -0.046497964642412626 ASDHSYELR 9 Unmodified _ASDHSYELR_ 0 0 0 nc|ENSG00000105732|Q6ZN55-2|ZNF574;ENSG00000105732|ENST00000359044|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 359.836839 1076.48869 -0.17591 -6.33E-05 0.19647 7.0699E-05 0.02056 7.3982E-06 359.8368739591625 31.154 0.63 29.005 28.67 29.3 -2.1483 -0.0068594 0.00017622 NaN 20.581 51 17 4 NaN NaN NaN NaN 0 NaN NaN 0 10824000 4130 2338 2436 2439 -0.046497964642412626 ASDIPGLHL 9 Unmodified _ASDIPGLHL_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.S825Pfs*25|1|0.34|ENSG00000107862|chr10:102367124-102367124|T/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5250549316406 2 461.753267 921.491981 0.19067 8.8043E-05 0.066852 3.0869E-05 0.25752 0.00011891 461.75323797629943 124.09 0.62532 124.09 123.85 124.47 0 21 17 2 0 0 0 0.042687 1 24499 24499 74.396 10.833 1 1718200 4131 2443 2437 2440 4487 4487 0.028094983804294316 ASDIPGLHL 9 Unmodified _ASDIPGLHL_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.S825Pfs*25|1|0.34|ENSG00000107862|chr10:102367124-102367124|T/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.753267 921.491981 -0.027216 -1.2567E-05 0.31163 0.0001439 0.28442 0.00013133 461.7533251241419 128.32 0.60988 123.69 123.47 124.08 -4.6292 -0.16431 9.8862E-05 NaN 74.396 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1488200 4132 2443 2437 2440 0.028094983804294316 ASDIPGLHL 9 Unmodified _ASDIPGLHL_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.S825Pfs*25|1|0.34|ENSG00000107862|chr10:102367124-102367124|T/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.753267 921.491981 0.084038 3.8805E-05 0.14562 6.7238E-05 0.22965 0.00010604 461.75328116503374 128.62 0.6445 123.8 123.48 124.13 -4.817 -0.054978 -5.4457E-05 NaN 74.396 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2068800 4133 2443 2437 2440 0.028094983804294316 ASDIPGLHL 9 Unmodified _ASDIPGLHL_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.S825Pfs*25|1|0.34|ENSG00000107862|chr10:102367124-102367124|T/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.753267 921.491981 0.15615 7.2101E-05 0.26642 0.00012302 0.42256 0.00019512 461.7532638115305 128.58 0.6293 123.84 123.56 124.19 -4.7408 -0.015042 5.7104E-05 NaN 74.396 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1647100 4134 2443 2437 2440 0.028094983804294316 ASDMLQLEY 9 Oxidation (M) _ASDM(Oxidation (M))LQLEY_ ASDM(1)LQLEY ASDM(110)LQLEY 0 0 1 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7711181640625 2 543.244615 1084.47468 0.51806 0.00028143 -0.26289 -0.00014282 0.25517 0.00013862 543.2444966253632 107.38 1.3146 107.38 107.07 108.38 0 103 37 5 0 0 0 0.006766 1 21105 21105 111.29 43.943 1 51393000 4135 3148 2438 2441 4488 4488 45 -0.06418210007564085 ASDMLQLEY 9 Oxidation (M) _ASDM(Oxidation (M))LQLEY_ ASDM(1)LQLEY ASDM(110)LQLEY 0 0 1 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7767944335938 2 543.244615 1084.47468 0.54454 0.00029582 -0.23074 -0.00012535 0.3138 0.00017047 543.2445208611049 106.78 0.70178 106.78 106.36 107.07 0 74 19 5 0 0 0 4.0304E-06 1 21039 21039 111.29 43.943 1 69910000 4136 3148 2438 2441 4489 4489 45 -0.06418210007564085 ASDMLQLEY 9 Oxidation (M) _ASDM(Oxidation (M))LQLEY_ ASDM(1)LQLEY ASDM(140)LQLEY 0 0 1 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78515625 2 543.244615 1084.47468 -0.057671 -3.133E-05 0.19949 0.00010837 0.14182 7.7041E-05 543.2447658203056 111.51 0.76685 107.08 106.61 107.38 -4.4231 82 21 5 0 0 0 1.7516E-05 1 21989 21989 136.33 58.349 1 58097000 4137 3148 2438 2441 4490 4490 45 -0.06418210007564085 ASDMLQLEY 9 Oxidation (M) _ASDM(Oxidation (M))LQLEY_ ASDM(1)LQLEY ASDM(100)LQLEY 0 0 1 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7781372070312 2 543.244615 1084.47468 -0.013616 -7.3967E-06 0.25426 0.00013812 0.24064 0.00013073 543.2447668131687 112.05 1.5922 107.63 107.34 108.93 -4.4231 102 44 5 0 0 0 0.01249 3 22033 22033;22037;22171 99.799 40.608 1 43570000 4138 3148 2438 2441 4491;4492;4493 4491 45 -0.06418210007564085 ASDMLQLEY 9 Oxidation (M) _ASDM(Oxidation (M))LQLEY_ ASDM(1)LQLEY ASDM(89)LQLEY 0 0 1 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7774047851562 2 543.244615 1084.47468 -0.061423 -3.3368E-05 0.40646 0.00022081 0.34504 0.00018744 543.2448461697145 111.64 0.6596 107.15 106.72 107.38 -4.4915 60 18 4 0 0 0 0.023341 1 21398 21398 88.954 31.483 1 33826000 4139 3148 2438 2441 4494 4494 45 -0.06418210007564085 ASDMLQLEY 9 Oxidation (M) _ASDM(Oxidation (M))LQLEY_ ASDM(1)LQLEY ASDM(110)LQLEY 0 0 1 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78955078125 2 543.244615 1084.47468 -0.013392 -7.2753E-06 0.20392 0.00011078 0.19053 0.0001035 543.2447698290631 112.19 1.6847 107.66 107.31 108.99 -4.5259 119 47 5 0 0 0 0.006766 4 21542 21476;21500;21542;21550 111.29 43.943 1 27256000 4140 3148 2438 2441 4495;4496;4497;4498 4497 45 -0.06418210007564085 ASDMLQLEY 9 Oxidation (M) _ASDM(Oxidation (M))LQLEY_ ASDM(1)LQLEY ASDM(120)LQLEY 0 0 1 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7911987304688 2 543.244615 1084.47468 0.68467 0.00037194 -0.53519 -0.00029074 0.14949 8.1208E-05 543.2443292676435 111.88 1.8152 107.65 107.29 109.1 -4.2289 128 51 4 0 0 0 0.00014526 3 21565 21468;21492;21565 123.45 52.317 1 37993000 4141 3148 2438 2441 4499;4500;4501 4501 45 -0.06418210007564085 ASDMLQLEY 9 Oxidation (M) _ASDM(Oxidation (M))LQLEY_ ASDM(1)LQLEY ASDM(100)LQLEY 0 0 1 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7 KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.770751953125 2 543.244615 1084.47468 0.69824 0.00037932 -0.33196 -0.00018034 0.36628 0.00019898 543.2444599499308 111.29 0.77094 107.06 106.52 107.29 -4.2289 80 21 5 0 0 0 0.0016877 1 21391 21391 99.799 42.328 1 55234000 4142 3148 2438 2441 4502 4502 45 -0.06418210007564085 ASDVDLEIES 10 Unmodified _ASDVDLEIES_ 0 0 0 ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3 ENST00000396522.6_1_14:21967741-21972178:-|nuORF ENST00000396522.6_1_14:21967741-21972178:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20452880859375 3 359.836393 1076.48735 0.30993 0.00011152 0.99208 0.00035699 1.302 0.00046851 359.8367187234529 30.96 0.56064 28.934 28.671 29.232 -2.0264 49 15 4 0 0 0 0.74977 1 5287 5287 5.7834 0.88642 1 10502000 4143 5666 2439 2442 4503 4503 -0.047834753436745814 ASDVEQDDDE 10 Unmodified _ASDVEQDDDE_ 0 0 0 REV__ENSG00000019485|ENST00000683152|PRDM11 REV__ENSG00000019485|ENST00000683152|PRDM11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20452880859375 3 374.807162 1121.39966 -0.16352 -6.1287E-05 0.54275 0.00020343 0.37923 0.00014214 374.80798155144333 136.31 0.563 136.31 135.88 136.45 0 34 15 3 0 0 0 0.73195 1 27004 27004 7.9454 2.5427 1 4789300 + 4144 13975 2440 2443 4504 4504 -0.15618721005102998 ASDYISDCWDS 11 Unmodified _ASDYISDCWDS_ 0 0 0 ENST00000483270.1_1_1:15886792-15891842:+|nuORF;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;DNAJC16|p.G599Afs*5|2|0.35|ENSG00000116138|chr1:15567109-15567109|A/-|frameshift_variant;ENSG00000116138|ENST00000375847|DNAJC16 ENST00000483270.1_1_1:15886792-15891842:+|nuORF ENST00000483270.1_1_1:15886792-15891842:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7798461914062 2 631.237518 1260.46048 0.31126 0.00019648 -0.25982 -0.00016401 0.051435 3.2468E-05 631.2372941746136 76.72 0.8251 72.954 72.471 73.296 -3.7664 56 23 3 0 0 0 0.69278 1 14483 14483 12.241 12.241 1 7309900 4145 875 2441 2444 4505 4505 -0.15932907226510906 ASDYYSTNE 9 Unmodified _ASDYYSTNE_ 0 0 0 tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1 tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1 tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 350.225830078125 3 350.473455 1048.39853 -0.31275 -0.00010961 1.8338 0.0006427 1.5211 0.00053309 350.4751253960761 116.05 1.0114 116.05 115.66 116.68 0 99 28 5 0 0 0 0.45496 1 22814 22814 0.40827 0 1 9731300 4146 25960 2442 2445 4506 4506 -0.12372890583310436 ASEDAAGP 8 Unmodified _ASEDAAGP_ 0 0 0 ENST00000354336.7_1_22:21271769-21272156:+|nuORF ENST00000354336.7_1_22:21271769-21272156:+|nuORF ENST00000354336.7_1_22:21271769-21272156:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 359.21771240234375 2 359.156126 716.297698 NaN NaN NaN NaN NaN NaN NaN 98.016 1 93.918 93.418 94.418 -4.0978 0 0 0 0.21486 1 19243 19243 5.7604 0 1 4147 8942 2443 2446 4507 4507 -0.07179877775524801 ASEEKVIFR 9 Unmodified _ASEEKVIFR_ 0 0 0 ENSG00000125650|ENST00000245810|PSPN ENSG00000125650|ENST00000245810|PSPN ENSG00000125650|ENST00000245810|PSPN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 70.417 1 66.837 66.337 67.337 -3.5798 0 0 0 0.19006 1 13273 13273 24.991 13.496 1 4148 3372 2444 2447 4508 4508 0.0461712798901317 ASEEKVIFR 9 Unmodified _ASEEKVIFR_ 0 0 0 ENSG00000125650|ENST00000245810|PSPN ENSG00000125650|ENST00000245810|PSPN ENSG00000125650|ENST00000245810|PSPN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 70.128 1 66.661 66.161 67.161 -3.467 0 0 0 0.23108 1 13277 13277 14.405 5.66 1 4149 3372 2444 2447 4509 4509 0.0461712798901317 ASEEKVIFR 9 Unmodified _ASEEKVIFR_ 0 0 0 ENSG00000125650|ENST00000245810|PSPN ENSG00000125650|ENST00000245810|PSPN ENSG00000125650|ENST00000245810|PSPN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 70.347 1 66.88 66.38 67.38 -3.467 0 0 0 0.19006 1 13320 13320 24.991 10.153 1 4150 3372 2444 2447 4510 4510 0.0461712798901317 ASEFGNHYLY 10 Unmodified _ASEFGNHYLY_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2744750976562 2 600.769645 1199.52474 0.41975 0.00025217 -0.026461 -1.5897E-05 0.39329 0.00023628 600.7695792361516 97.284 0.93565 97.284 96.841 97.776 0 82 26 4 0 0 0 0.26486 2 19064 19021;19064 39.957 22.844 1 39448000 4151 7215 2445 2448 4511;4512 4512 -0.0670433928737566 ASEFGNHYLY 10 Unmodified _ASEFGNHYLY_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.273193359375 2 600.769645 1199.52474 0.98643 0.00059262 -0.58675 -0.0003525 0.39968 0.00024012 600.7692602191684 101.76 0.96397 97.577 97.098 98.062 -4.1861 95 27 5 0 0 0 0.32088 5 19953 19943;19953;19990;19995;20043 36.127 23.279 1 38942000 4152 7215 2445 2448 4513;4514;4515;4516;4517 4514 -0.0670433928737566 ASEFGNHYLY 10 Unmodified _ASEFGNHYLY_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2744750976562 2 600.769645 1199.52474 0.68371 0.00041075 -0.38554 -0.00023162 0.29817 0.00017913 600.7693868939982 101.75 0.91774 97.433 96.989 97.906 -4.3208 95 26 5 0 0 0 0.26486 2 19476 19428;19476 39.957 27.717 1 38121000 4153 7215 2445 2448 4518;4519 4519 -0.0670433928737566 ASEFGNHYLY 10 Unmodified _ASEFGNHYLY_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2861328125 2 600.769645 1199.52474 0.49303 0.0002962 -0.19 -0.00011415 0.30303 0.00018205 600.7694590456929 101.45 1.0831 97.462 96.957 98.041 -3.9895 98 30 5 0 0 0 0.29845 4 19480 19474;19480;19518;19533 26.884 20.173 1 30012000 4154 7215 2445 2448 4520;4521;4522;4523 4521 -0.0670433928737566 ASEGLEAAPA 10 Unmodified _ASEGLEAAPA_ 0 0 0 REV__MYBPC3|p.G261Afs*39|1|0.39|ENSG00000134571|chr11:47347896-47347896|C/-|frameshift_variant REV__MYBPC3|p.G261Afs*39|1|0.39|ENSG00000134571|chr11:47347896-47347896|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22381591796875 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 79.194 1 75.684 75.184 76.184 -3.5102 0 0 0 0.19577 1 15467 15467 29.082 0.59474 1 + 4155 16217 2446 2449 4524 4524 -0.026113886158213973 ASEKHQHMY 9 Unmodified _ASEKHQHMY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.84014892578125 3 377.506436 1129.49748 -0.8856 -0.00033432 0.46376 0.00017507 -0.42184 -0.00015925 377.5066767027198 14.566 0.65766 13.452 13.263 13.921 -1.1142 54 18 5 0 0 0 0.25976 1 2190 2190 17.572 15.666 1 32244000 4156 2563 2447 2450 4525 4525 -0.06209146099422469 ASEKHQHMY 9 Unmodified _ASEKHQHMY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 377.506436 1129.49748 -0.27344 -0.00010322 -0.034515 -1.303E-05 -0.30795 -0.00011625 377.5064904722768 13.811 0.56082 13.811 13.65 14.211 0 0.2548 -0.00024924 NaN 17.572 46 15 5 NaN NaN NaN NaN 0 NaN NaN 0 29285000 4157 2563 2447 2450 -0.06209146099422469 ASEKHQHMY 9 Unmodified _ASEKHQHMY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 377.506436 1129.49748 -0.62835 -0.0002372 0.14868 5.6127E-05 -0.47967 -0.00018108 377.506526253825 14.578 0.5954 13.405 13.279 13.875 -1.173 -0.15085 -4.1775E-05 NaN 17.572 34 16 5 NaN NaN NaN NaN 0 NaN NaN 0 7813300 4158 2563 2447 2450 -0.06209146099422469 ASEKPVYVS 9 Unmodified _ASEKPVYVS_ 0 0 0 tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1 tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1 tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25860595703125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 110.6 1 106.37 105.87 106.87 -4.2289 0 0 0 0.19704 1 21285 21285 2.6312 1.9498 1 4159 26096 2448 2451 4526 4526 0.012100613149982564 ASEKQYTTYI 10 Unmodified _ASEKQYTTYI_ 0 0 0 ENST00000442955.2_1_9:6669055-6669223:-|nuORF ENST00000442955.2_1_9:6669055-6669223:-|nuORF ENST00000442955.2_1_9:6669055-6669223:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2958374023438 2 602.298236 1202.58192 NaN NaN NaN NaN NaN NaN NaN 101.86 1 97.544 97.044 98.044 -4.3208 0 0 0 0.22569 1 19496 19496 15.847 1.0089 1 4160 9906 2449 2452 4527 4527 -0.011269168016497133 ASENQKIKK 9 Unmodified _ASENQKIKK_ 0 0 0 REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6854858398438 2 523.303655 1044.59276 0.40324 0.00021102 -0.97862 -0.00051211 -0.57538 -0.0003011 523.3030571475248 49.847 0.23918 49.847 49.719 49.958 0 10 6 2 0 0 0 0.80521 1 9405 9405 15.847 0 1 341620 + 4161 19189 2450 2453 4528 4528 0.07224530363282611 ASEQDILKY 9 Unmodified _ASEQDILKY_ 0 0 0 BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant;ENSG00000011114|ENST00000334746|BTBD7;BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant;BTBD7|p.P760Lfs*61|1|0.45|ENSG00000011114|chr14:93246129-93246129|G/-|frameshift_variant;ENST00000554644.1_1_14:93723510-93760888:-|nuORF;BTBD7|p.N566Mfs*22|1|0.26|ENSG00000011114|chr14:93253702-93253702|T/-|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.263916015625 2 533.774396 1065.53424 0.014078 7.5146E-06 -0.10211 -5.4503E-05 -0.088031 -4.6988E-05 533.7743167663065 87.317 0.78792 83.59 83.184 83.972 -3.727 37 21 2 0 0 0 0.033674 1 17084 17084 96.936 39.686 1 12441000 4162 343 2451 2454 4529 4529 0.004094289981367183 ASEQDILKY 9 Unmodified _ASEQDILKY_ 0 0 0 BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant;ENSG00000011114|ENST00000334746|BTBD7;BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant;BTBD7|p.P760Lfs*61|1|0.45|ENSG00000011114|chr14:93246129-93246129|G/-|frameshift_variant;ENST00000554644.1_1_14:93723510-93760888:-|nuORF;BTBD7|p.N566Mfs*22|1|0.26|ENSG00000011114|chr14:93253702-93253702|T/-|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.262451171875 2 533.774396 1065.53424 0.67791 0.00036185 -0.54182 -0.00028921 0.13608 7.2638E-05 533.774044543067 87.485 0.7087 83.49 83.159 83.868 -3.9953 36 19 2 0 0 0 1.0636E-05 1 16671 16671 148.27 77.135 1 10471000 4163 343 2451 2454 4530 4530 0.004094289981367183 ASEQDILKY 9 Unmodified _ASEQDILKY_ 0 0 0 BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant;ENSG00000011114|ENST00000334746|BTBD7;BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant;BTBD7|p.P760Lfs*61|1|0.45|ENSG00000011114|chr14:93246129-93246129|G/-|frameshift_variant;ENST00000554644.1_1_14:93723510-93760888:-|nuORF;BTBD7|p.N566Mfs*22|1|0.26|ENSG00000011114|chr14:93253702-93253702|T/-|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2763061523438 2 533.774396 1065.53424 0.19093 0.00010191 -0.18892 -0.00010084 0.0020088 1.0723E-06 533.77427655374 87.276 0.95418 83.547 83.048 84.002 -3.7289 44 26 2 0 0 0 0.0034036 1 16668 16668 114.19 54.113 1 12642000 4164 343 2451 2454 4531 4531 0.004094289981367183 ASETERYYY 9 Unmodified _ASETERYYY_ 0 0 0 REV__ENST00000493762.1_1_3:169650279-169650495:+|nuORF REV__ENST00000493762.1_1_3:169650279-169650495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 591.2572631835938 2 591.259111 1180.50367 NaN NaN NaN NaN NaN NaN NaN 36.077 1 36.077 35.577 36.577 0 0 0 0 0.23508 1 6642 6642 7.2892 2.7604 1 + 4165 22355 2452 2455 4532 4532 -0.07936349386909569 ASETETDKHGE 11 Unmodified _ASETETDKHGE_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2745361328125 2 602.259839 1202.50512 0.4448 0.00026788 2.1316 0.0012838 2.5764 0.0015517 602.2601244321419 97.524 0.17656 97.524 97.364 97.541 0 5 4 2 0 0 0 0.61937 1 19110 19110 17.113 1.2657 1 606450 + 4166 17221 2453 2456 4533 4533 -0.08802760088815376 ASEVDAHLLPV 11 Unmodified _ASEVDAHLLPV_ 0 0 0 nc|ENSG00000290184|Q9BZS1-3|FOXP3 nc|ENSG00000290184|Q9BZS1-3|FOXP3 nc|ENSG00000290184|Q9BZS1-3|FOXP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3353881835938 2 575.808771 1149.60299 -0.083962 -4.8346E-05 -0.27684 -0.00015941 -0.3608 -0.00020775 576.3099208108396 74.349 0.38137 70.985 70.675 71.057 -3.3643 15 10 2 0 0 0 0.92792 1 14511 14511 8.7454 2.0222 1 1448600 4167 12658 2454 2457 4534 4534 0.03417093297844076 ASGAAAKN 8 Unmodified _ASGAAAKN_ 0 0 0 REV__ENSG00000007376|ENST00000007264|RPUSD1 REV__ENSG00000007376|ENST00000007264|RPUSD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.1805725097656 2 345.182478 688.350402 NaN NaN NaN NaN NaN NaN NaN 63.432 1 63.432 62.932 63.932 0 0 0 0 0.23782 1 12197 12197 0.12286 0 1 + 4168 13888 2455 2458 4535 4535 -0.006238749220528916 ASGAPPSAKK 10 Unmodified _ASGAPPSAKK_ 0 0 0 REV__ENST00000492736.1_1_8:101964273-101965574:-|nuORF REV__ENST00000492736.1_1_8:101964273-101965574:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.18597412109375 3 305.174903 912.50288 NaN NaN NaN NaN NaN NaN NaN 128.95 1 124.21 123.71 124.71 -4.7408 0 0 0 0.22588 1 24814 24814 0.69767 0.23933 1 + 4169 22338 2456 2459 4536 4536 0.043129007547122455 ASGGTKKA 8 Unmodified _ASGGTKKA_ 0 0 0 nc|ENSG00000259802|P0DW81|MARCHF6-DT;ENST00000561606.1_1_5:10353444-10353579:-|nuORF nc|ENSG00000259802|P0DW81|MARCHF6-DT nc|ENSG00000259802|P0DW81|MARCHF6-DT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2047424316406 2 360.205953 718.397353 NaN NaN NaN NaN NaN NaN NaN 17.642 1 17.642 17.142 18.142 0 0 0 0 0.23899 1 2803 2803 1.3295 1.3295 1 4170 11305 2457 2460 4537 4537 0.026889846290941932 ASGIDDQALE 10 Unmodified _ASGIDDQALE_ 0 0 0 ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1020.4734497070312 1 1018.46875 1017.46147 0.55866 0.00056898 -0.77222 -0.00078649 -0.21356 -0.00021751 1018.4679955603174 53.066 0.78182 53.066 52.573 53.354 0 46 21 3 0 0 0 0.42569 1 10078 10078 29.082 0 1 7609000 4171 3888 2458 2461 4538 4538 -0.046563247952917663 ASGNDERRNNA 11 Unmodified _ASGNDERRNNA_ 0 0 0 sp|P16755|UL13_HCMVAUncharacterizedproteinUL13OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL13PE=1SV=1;sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 sp|P16755|UL13_HCMVAUncharacterizedproteinUL13OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL13PE=1SV=1;sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2789916992188 2 602.276689 1202.53882 0.39438 0.00023752 0.68646 0.00041344 1.0808 0.00065096 602.2772314219422 81.959 0.37084 78.12 77.927 78.298 -3.8392 13 10 3 0 0 0 0.65515 1 15545 15545 3.0723 0 1 1397200 4172 25753;25767 2459 2462 4539 4539 -0.05434293806365531 ASGSRARQP 9 Unmodified _ASGSRARQP_ 0 0 0 REV__ENST00000369331.8_1_10:115439071-115457263:+|nuORF REV__ENST00000369331.8_1_10:115439071-115457263:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2483215332031 2 465.249215 928.483876 NaN NaN NaN NaN NaN NaN NaN 20.387 1 18.99 18.49 19.49 -1.3966 0 0 0 0.22621 1 3406 3406 15.847 0 1 + 4173 20960 2460 2463 4540 4540 0.01677364183649388 ASGVPENSPP 10 Unmodified _ASGVPENSPP_ 0 0 0 TULP4|p.L1009Cfs*15|1|0.42|ENSG00000130338|chr6:158502683-158502683|C/-|frameshift_variant;ENSG00000130338|ENST00000367097|TULP4;TULP4|p.G674E|1|0.29|ENSG00000130338|chr6:158501684-158501684|G/A|missense_variant;TULP4|p.Q824Rfs*5|1|0.3|ENSG00000130338|chr6:158502128-158502128|C/-|frameshift_variant;TULP4|p.Q824Pfs*63|2|0.33|ENSG00000130338|chr6:158502127-158502128|-/C|frameshift_variant TULP4|p.L1009Cfs*15|1|0.42|ENSG00000130338|chr6:158502683-158502683|C/-|frameshift_variant TULP4|p.L1009Cfs*15|1|0.42|ENSG00000130338|chr6:158502683-158502683|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73382568359375 2 477.729989 953.445425 0.25333 0.00012102 -0.12728 -6.0806E-05 0.12605 6.0216E-05 477.72989600675373 37.111 0.73733 34.774 34.349 35.086 -2.3375 44 20 3 0 0 0 0.30531 1 6536 6536 1.0651 0 1 3116800 4174 3603 2461 2464 4541 4541 -0.033159862415232055 ASHEVGHL 8 Unmodified _ASHEVGHL_ 0 0 0 REV__SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant REV__SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2362365722656 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 96.581 1 92.483 91.983 92.983 -4.0978 0 0 0 0.21486 1 18942 18942 9.3474 3.587 1 + 4175 19528 2462 2465 4542 4542 -0.01620514484955038 ASHEVGHL 8 Unmodified _ASHEVGHL_ 0 0 0 REV__SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant REV__SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24139404296875 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 70.946 1 67.366 66.866 67.866 -3.5798 0 0 0 0.2343 1 13376 13376 0.12286 0 1 + 4176 19528 2462 2465 4543 4543 -0.01620514484955038 ASHEVGHL 8 Unmodified _ASHEVGHL_ 0 0 0 REV__SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant REV__SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2470397949219 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 93.252 1 89.108 88.608 89.608 -4.1435 0 0 0 0.2343 1 17773 17773 0.12286 0 1 + 4177 19528 2462 2465 4544 4544 -0.01620514484955038 ASHEVGHL 8 Unmodified _ASHEVGHL_ 0 0 0 REV__SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant REV__SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24566650390625 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 74.512 1 70.918 70.418 71.418 -3.594 0 0 0 0.2343 1 14152 14152 0.12286 0 1 + 4178 19528 2462 2465 4545 4545 -0.01620514484955038 ASHEVGHL 8 Unmodified _ASHEVGHL_ 0 0 0 REV__SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant REV__SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2524719238281 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 125.61 1 120.96 120.46 121.46 -4.6495 0 0 0 0.21486 1 24168 24168 10.183 0.83596 1 + 4179 19528 2462 2465 4546 4546 -0.01620514484955038 ASHLANPFW 9 Unmodified _ASHLANPFW_ 0 0 0 REV__USP39|p.L327P|1|0.05|ENSG00000168883|chr2:85636083-85636083|T/C|missense_variant REV__USP39|p.L327P|1|0.05|ENSG00000168883|chr2:85636083-85636083|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2608032226562 2 521.758884 1041.50321 0.24593 0.00012831 -0.33157 -0.000173 -0.085647 -4.4687E-05 521.7587294095927 132.66 0.175 127.86 127.76 127.93 -4.799 7 4 2 0 0 0 0.62102 1 25541 25541 11.64 1.4569 1 683330 + 4180 25525 2463 2466 4547 4547 -0.015876795254371245 ASHQLIVEVQ 10 Unmodified _ASHQLIVEVQ_ 0 0 0 REV__LAMB1|p.T1709Lfs*22|3|0.29|ENSG00000091136|chr7:107924329-107924329|T/-|frameshift_variant REV__LAMB1|p.T1709Lfs*22|3|0.29|ENSG00000091136|chr7:107924329-107924329|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.208740234375 3 375.208384 1122.60332 0.065683 2.4645E-05 0.17024 6.3875E-05 0.23592 8.852E-05 375.2085500699447 49.67 0.27606 49.67 49.477 49.753 0 12 7 2 0 0 0 0.52813 1 9376 9376 0.26539 0 1 665620 + 4181 14564 2464 2467 4548 4548 0.04692513017721467 ASIILDDTI 9 Unmodified _ASIILDDTI_ 0 0 0 tr|U7STU1|U7STU1_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01570PE=4SV=1 tr|U7STU1|U7STU1_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01570PE=4SV=1 tr|U7STU1|U7STU1_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01570PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2490539550781 2 480.76604 959.517527 0.37991 0.00018265 3.5212 0.0016929 3.9011 0.0018755 480.76544783151763 100.91 0.11089 100.91 100.83 100.94 0 4 2 2 0 0 0 0.54354 1 19803 19803 16.942 3.4344 1 503780 4182 26168 2465 2468 4549 4549 0.036149281121993226 ASIIMVTNL 9 Unmodified _ASIIMVTNL_ 0 0 0 ENSG00000173482|ENST00000580170|PTPRM;nc|ENSG00000173482|P28827|PTPRM;ENST00000577827.5_1_18:8296422-8376613:+|nuORF ENSG00000173482|ENST00000580170|PTPRM ENSG00000173482|ENST00000580170|PTPRM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23760986328125 2 481.272978 960.531403 NaN NaN NaN NaN NaN NaN NaN 43.47 1 40.704 40.204 41.204 -2.7661 0 0 0 0.19704 1 7852 7852 0.37959 0 1 4183 6296 2466 2469 4550 4550 0.04955882339629625 ASILQNSVSF 10 Unmodified _ASILQNSVSF_ 0 0 0 nc|ENSG00000124532|Q9HD23-4|MRS2 nc|ENSG00000124532|Q9HD23-4|MRS2 nc|ENSG00000124532|Q9HD23-4|MRS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2814331054688 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 112.2 1 107.68 107.18 108.18 -4.5259 0 0 0 2.8426 1 21538 21538 19.362 7.1213 1 4184 12304 2467 2470 4551 4551 0.020531352350417365 ASIQMNVAE 9 Unmodified _ASIQMNVAE_ 0 0 0 ENSG00000171858|ENST00000343986|RPS21 ENSG00000171858|ENST00000343986|RPS21 ENSG00000171858|ENST00000343986|RPS21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7854919433594 2 481.734217 961.453881 0.18112 8.7254E-05 0.89672 0.00043198 1.0778 0.00051924 481.7349044894829 40.744 0.88038 40.744 40.316 41.197 0 54 24 3 0 0 0 0.62921 1 7655 7655 18.146 3.3081 1 3839400 4185 6182 2468 2471 4552 4552 -0.028387555965423417 ASKEEKQQP 9 Unmodified _ASKEEKQQP_ 0 0 0 ZC3H12B|p.S479Afs*71|1|0.28|ENSG00000102053|chrX:65502124-65502124|C/-|frameshift_variant;ZC3H12B|p.V574Cfs*14|1|0.11|ENSG00000102053|chrX:65502413-65502413|G/-|frameshift_variant;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B ZC3H12B|p.S479Afs*71|1|0.28|ENSG00000102053|chrX:65502124-65502124|C/-|frameshift_variant ZC3H12B|p.S479Afs*71|1|0.28|ENSG00000102053|chrX:65502124-65502124|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2601318359375 2 522.769645 1043.52474 -0.48391 -0.00025298 0.47649 0.00024909 -0.0074276 -3.8829E-06 522.769846345331 35.298 0.49305 32.904 32.634 33.127 -2.3938 17 13 2 0 0 0 0.60663 1 6515 6515 20.415 5.1661 1 524330 4186 2107 2469 2472 4553 4553 0.004716607126283634 ASKHFEHMD 9 Unmodified _ASKHFEHMD_ 0 0 0 ENST00000512576.2_2_4:57319883-57325676:+|nuORF ENST00000512576.2_2_4:57319883-57325676:+|nuORF ENST00000512576.2_2_4:57319883-57325676:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 368.1806640625 3 367.830919 1100.47093 -0.23545 -8.6605E-05 0.96548 0.00035513 0.73003 0.00026853 367.83123017870497 19.63 0.44354 19.63 19.415 19.859 0 29 12 3 0 0 0 0.6226 1 3223 3223 4.897 0 1 1686700 4187 10757 2470 2473 4554 4554 -0.07528834990739597 ASKHFEHMD 9 Unmodified _ASKHFEHMD_ 0 0 0 ENST00000512576.2_2_4:57319883-57325676:+|nuORF ENST00000512576.2_2_4:57319883-57325676:+|nuORF ENST00000512576.2_2_4:57319883-57325676:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 367.830919 1100.47093 0.16107 5.9246E-05 0.90287 0.0003321 1.0639 0.00039135 367.831176548818 21.09 0.45646 19.616 19.42 19.876 -1.4742 0.019782 -4.0188E-05 NaN 4.897 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 917800 4188 10757 2470 2473 -0.07528834990739597 ASKHFEHMD 9 Unmodified _ASKHFEHMD_ 0 0 0 ENST00000512576.2_2_4:57319883-57325676:+|nuORF ENST00000512576.2_2_4:57319883-57325676:+|nuORF ENST00000512576.2_2_4:57319883-57325676:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 367.830919 1100.47093 -0.21006 -7.7266E-05 0.93557 0.00034413 0.72551 0.00026687 368.16548224778074 20.926 0.38186 19.541 19.375 19.757 -1.3847 -0.054347 -4.1E-06 NaN 4.897 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 906340 4189 10757 2470 2473 -0.07528834990739597 ASKKSSKKV 9 Unmodified _ASKKSSKKV_ 0 0 0 REV__HMGXB4|p.R229W|1|0.36|ENSG00000100281|chr22:35265073-35265073|C/T|missense_variant REV__HMGXB4|p.R229W|1|0.36|ENSG00000100281|chr22:35265073-35265073|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7864074707031 2 481.803291 961.59203 NaN NaN NaN NaN NaN NaN NaN 46.278 1 43.412 42.912 43.912 -2.8653 0 0 0 0.23508 1 8410 8410 4.3292 2.2695 1 + 4190 14683 2471 2474 4555 4555 0.10969735714240869 ASMPVGVL 8 Unmodified _ASMPVGVL_ 0 0 0 ENSG00000175946|ENST00000684634|KLHL38 ENSG00000175946|ENST00000684634|KLHL38 ENSG00000175946|ENST00000684634|KLHL38 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.2135009765625 2 387.214932 772.415311 NaN NaN NaN NaN NaN NaN NaN 54.002 1 51.118 50.618 51.618 -2.8837 0 0 0 0.21486 1 10294 10294 9.3474 2.9933 1 4191 6441 2472 2475 4556 4556 0.01999983559608154 ASMRCTSVRSF 11 Unmodified _ASMRCTSVRSF_ 0 0 0 REV__ENST00000243077.7_1_12:57578164-57579547:+|nuORF REV__ENST00000243077.7_1_12:57578164-57579547:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7542114257812 2 622.797357 1243.58016 NaN NaN NaN NaN NaN NaN NaN 76.607 1 73.192 72.692 73.692 -3.4151 0 0 0 0.22595 1 14952 14952 11.495 1.4208 1 + 4192 20093 2473 2476 4557 4557 -0.03188572362910236 ASPATLSVQPA 11 Unmodified _ASPATLSVQPA_ 0 0 0 ENST00000427076.5_1_7:44027725-44054350:-|nuORF;ENST00000422304.1_1_7:44027725-44058742:-|nuORF;ENST00000454572.1_1_7:44005962-44058742:-|nuORF ENST00000427076.5_1_7:44027725-44054350:-|nuORF ENST00000427076.5_1_7:44027725-44054350:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2637329101562 2 521.282389 1040.55022 -0.32379 -0.00016879 -0.7455 -0.00038861 -1.0693 -0.0005574 521.2819605418938 48.703 0.65748 45.834 45.487 46.144 -2.869 47 18 3 0 0 0 0.74417 1 9275 9275 8.7454 0.58988 1 11568000 4193 9679 2474 2477 4558 4558 0.031571352350511006 ASPRAPYGP 9 Unmodified _ASPRAPYGP_ 0 0 0 REV__ENSG00000132205|ENST00000254528|EMILIN2 REV__ENSG00000132205|ENST00000254528|EMILIN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23895263671875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 63.144 1 63.144 62.644 63.644 0 0 0 0 0.12123 1 12137 12137 34.402 5.3201 1 + 4194 16100 2475 2478 4559 4559 0.00036345066178000707 ASPRAPYGP 9 Unmodified _ASPRAPYGP_ 0 0 0 REV__ENSG00000132205|ENST00000254528|EMILIN2 REV__ENSG00000132205|ENST00000254528|EMILIN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2379150390625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 63.418 1 63.418 62.918 63.918 0 0 0 0 0.20699 1 12194 12194 21.537 1.0834 1 + 4195 16100 2475 2478 4560 4560 0.00036345066178000707 ASPRAPYGP 9 Unmodified _ASPRAPYGP_ 0 0 0 REV__ENSG00000132205|ENST00000254528|EMILIN2 REV__ENSG00000132205|ENST00000254528|EMILIN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2394104003906 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 66.08 1 63.033 62.533 63.533 -3.047 0 0 0 0.12123 1 12797 12797 34.402 9.0024 1 + 4196 16100 2475 2478 4561 4561 0.00036345066178000707 ASPRAPYGP 9 Unmodified _ASPRAPYGP_ 0 0 0 REV__ENSG00000132205|ENST00000254528|EMILIN2 REV__ENSG00000132205|ENST00000254528|EMILIN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2392272949219 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 66.387 1 63.34 62.84 63.84 -3.047 0 0 0 0.081239 1 12861 12861 41.84 11.203 1 + 4197 16100 2475 2478 4562 4562 0.00036345066178000707 ASPRAPYGP 9 Unmodified _ASPRAPYGP_ 0 0 0 REV__ENSG00000132205|ENST00000254528|EMILIN2 REV__ENSG00000132205|ENST00000254528|EMILIN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23809814453125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 66.456 1 63.129 62.629 63.629 -3.3268 0 0 0 0.12123 1 12510 12510 34.402 9.0024 1 + 4198 16100 2475 2478 4563 4563 0.00036345066178000707 ASPWEKWYESS 11 Unmodified _ASPWEKWYESS_ 0 0 0 REV__CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant REV__CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 685.2940673828125 2 685.306592 1368.59863 NaN NaN NaN NaN NaN NaN NaN 40.363 1 37.873 37.373 38.373 -2.4896 0 0 0 0.23698 1 7223 7223 5.7319 4.0792 1 + 4199 13619 2476 2479 4564 4564 -0.0709241591571299 ASQALKHPYF 10 Unmodified _ASQALKHPYF_ 0 0 0 MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant;nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7247009277344 3 387.873224 1160.59784 -0.21942 -8.5107E-05 -1.1673 -0.00045278 -1.3867 -0.00053788 388.2074506612132 45.426 0.31343 42.585 42.512 42.825 -2.8409 10 8 2 0 0 0 0.74977 1 8587 8587 5.7834 0 1 295670 4200 2652 2477 2480 4565 4565 0.02396834225874045 ASRCDCDH 8 Unmodified _ASRCDCDH_ 0 0 0 ENST00000469390.5_1_1:156877911-156884587:+|nuORF;PEAR1|p.R956Gfs*30|1|0.3|ENSG00000187800|chr1:156913998-156913998|C/-|frameshift_variant;PEAR1|p.G1005Rfs*4|1|0.39|ENSG00000187800|chr1:156914690-156914691|-/C|frameshift_variant;ENSG00000187800|ENST00000292357|PEAR1;PEAR1|p.G784Afs*136|1|0.49|ENSG00000187800|chr1:156912905-156912905|A/-|frameshift_variant ENST00000469390.5_1_1:156877911-156884587:+|nuORF ENST00000469390.5_1_1:156877911-156884587:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7480773925781 2 453.663269 905.311985 0.1317 5.9746E-05 -1.2484 -0.00056634 -1.1167 -0.0005066 453.66285235718783 38.612 0.67056 36.207 35.948 36.619 -2.4049 33 18 2 0 0 0 0.99494 1 6823 6823 13.508 5.5977 1 1252500 4201 7130 2478 2481 4566 4566 -0.14445871890541184 ASRHESGHY 9 Unmodified _ASRHESGHY_ 0 0 0 ENST00000347310.9_1_1:67632201-67635079:+|nuORF ENST00000347310.9_1_1:67632201-67635079:+|nuORF ENST00000347310.9_1_1:67632201-67635079:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.25927734375 2 522.236304 1042.45806 NaN NaN NaN NaN NaN NaN NaN 161.35 1 156.1 155.6 156.6 -5.2526 0 0 0 0.23508 1 31313 31313 12.532 0 1 4202 8911 2479 2482 4567 4567 -0.061475300586153026 ASRIRQQEV 9 Unmodified _ASRIRQQEV_ 0 0 0 REV__BSN|p.T1070A|1|0.36|ENSG00000164061|chr3:49652764-49652764|A/G|missense_variant REV__BSN|p.T1070A|1|0.36|ENSG00000164061|chr3:49652764-49652764|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7758178710938 2 543.804354 1085.59415 0.33749 0.00018353 3.512 0.0019098 3.8495 0.0020934 543.8059183272659 151.36 0.42015 146.61 146.36 146.78 -4.7523 17 11 2 0 0 0 0.39189 1 30039 30039 26.268 3.6101 1 1562800 + 4203 13215 2480 2483 4568 4568 0.054781644520289774 ASRIRQQEV 9 Unmodified _ASRIRQQEV_ 0 0 0 REV__BSN|p.T1070A|1|0.36|ENSG00000164061|chr3:49652764-49652764|A/G|missense_variant REV__BSN|p.T1070A|1|0.36|ENSG00000164061|chr3:49652764-49652764|A/G|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.804354 1085.59415 0.33851 0.00018408 8.2896 0.0045079 8.6281 0.004692 544.3093700732551 146.23 0.17154 146.23 146.08 146.25 0 -0.18536 0.0043329 NaN 26.268 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2142500 + 4204 13215 2480 2483 0.054781644520289774 ASRQAAGIPG 10 Unmodified _ASRQAAGIPG_ 0 0 0 CYP20A1|p.L302Ifs*3|1|0.2|ENSG00000119004|chr2:203285656-203285657|-/A|frameshift_variant;CYP20A1|p.K301Nfs*6|1|0.34|ENSG00000119004|chr2:203285657-203285657|A/-|frameshift_variant;nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENSG00000119004|ENST00000356079|CYP20A1;CYP20A1|p.K125Nfs*7|1|0.41|ENSG00000119004|chr2:203252047-203252047|A/-|frameshift_variant;CYP20A1|p.N129Sfs*4|1|0.04|ENSG00000119004|chr2:203252062-203252063|-/GC|frameshift_variant CYP20A1|p.L302Ifs*3|1|0.2|ENSG00000119004|chr2:203285656-203285657|-/A|frameshift_variant CYP20A1|p.L302Ifs*3|1|0.2|ENSG00000119004|chr2:203285656-203285657|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24664306640625 2 464.253966 926.493378 1.0083 0.0004681 -0.46871 -0.0002176 0.53956 0.00025049 464.2534634555402 26.518 0.78966 24.736 24.483 25.272 -1.7821 44 22 4 0 0 0 0.42762 1 4686 4686 18.122 16.379 1 3744300 4205 765 2481 2484 4569 4569 0.027191324691898444 ASRYTNNM 8 Unmodified _ASRYTNNM_ 0 0 0 REV__KLHL22|p.V23M|1|0.32|ENSG00000099910|chr22:20489145-20489145|C/T|missense_variant REV__KLHL22|p.V23M|1|0.32|ENSG00000099910|chr22:20489145-20489145|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7312927246094 2 478.716359 955.418164 NaN NaN NaN NaN NaN NaN NaN 118.31 1 118.31 117.81 118.81 0 0 0 0 0.2293 1 23302 23302 0.68139 0.27313 1 + 4206 23725 2482 2485 4570 4570 -0.06132793053564001 ASSDNGCEVK 10 Unmodified _ASSDNGCEVK_ 0 0 0 ENSG00000116793|ENST00000369604|PHTF1;PHTF1|p.P491Hfs*15|1|0.16|ENSG00000116793|chr1:113706091-113706091|A/-|frameshift_variant;PHTF1|p.F546Sfs*2|1|0.17|ENSG00000116793|chr1:113705924-113705924|A/-|frameshift_variant;PHTF1|p.M547Hfs*10|1|0.23|ENSG00000116793|chr1:113705923-113705924|-/A|frameshift_variant;nc|ENSG00000116793|Q9UMS5-2|PHTF1 ENSG00000116793|ENST00000369604|PHTF1 ENSG00000116793|ENST00000369604|PHTF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0618591308594 3 337.146684 1008.41822 -0.3595 -0.0001212 1.1963 0.00040333 0.8368 0.00028213 337.1470250907067 35.189 0.58897 32.912 32.692 33.281 -2.2766 22 16 2 0 0 0 0.74977 1 6244 6244 5.7834 1.4542 1 797640 4207 2955 2483 2486 4571 4571 -0.0856483784421016 ASSDNGCEVK 10 Unmodified _ASSDNGCEVK_ 0 0 0 ENSG00000116793|ENST00000369604|PHTF1;PHTF1|p.P491Hfs*15|1|0.16|ENSG00000116793|chr1:113706091-113706091|A/-|frameshift_variant;PHTF1|p.F546Sfs*2|1|0.17|ENSG00000116793|chr1:113705924-113705924|A/-|frameshift_variant;PHTF1|p.M547Hfs*10|1|0.23|ENSG00000116793|chr1:113705923-113705924|-/A|frameshift_variant;nc|ENSG00000116793|Q9UMS5-2|PHTF1 ENSG00000116793|ENST00000369604|PHTF1 ENSG00000116793|ENST00000369604|PHTF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 337.146684 1008.41822 -0.3891 -0.00013119 0.99972 0.00033705 0.61061 0.00020587 337.1470000211303 32.996 0.52671 32.996 32.78 33.307 0 0.020319 -6.1923E-05 NaN 5.7834 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 891430 4208 2955 2483 2486 -0.0856483784421016 ASSDNGCEVK 10 Unmodified _ASSDNGCEVK_ 0 0 0 ENSG00000116793|ENST00000369604|PHTF1;PHTF1|p.P491Hfs*15|1|0.16|ENSG00000116793|chr1:113706091-113706091|A/-|frameshift_variant;PHTF1|p.F546Sfs*2|1|0.17|ENSG00000116793|chr1:113705924-113705924|A/-|frameshift_variant;PHTF1|p.M547Hfs*10|1|0.23|ENSG00000116793|chr1:113705923-113705924|-/A|frameshift_variant;nc|ENSG00000116793|Q9UMS5-2|PHTF1 ENSG00000116793|ENST00000369604|PHTF1 ENSG00000116793|ENST00000369604|PHTF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 337.146684 1008.41822 -0.56524 -0.00019057 1.4233 0.00047986 0.85805 0.00028929 337.14710164630515 35.364 0.45657 32.97 32.634 33.091 -2.3938 -0.0054241 0.00036649 NaN 5.7834 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1038900 4209 2955 2483 2486 -0.0856483784421016 ASSDNGCEVK 10 Unmodified _ASSDNGCEVK_ 0 0 0 ENSG00000116793|ENST00000369604|PHTF1;PHTF1|p.P491Hfs*15|1|0.16|ENSG00000116793|chr1:113706091-113706091|A/-|frameshift_variant;PHTF1|p.F546Sfs*2|1|0.17|ENSG00000116793|chr1:113705924-113705924|A/-|frameshift_variant;PHTF1|p.M547Hfs*10|1|0.23|ENSG00000116793|chr1:113705923-113705924|-/A|frameshift_variant;nc|ENSG00000116793|Q9UMS5-2|PHTF1 ENSG00000116793|ENST00000369604|PHTF1 ENSG00000116793|ENST00000369604|PHTF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 337.146684 1008.41822 0.16525 5.5712E-05 0.77565 0.00026151 0.9409 0.00031722 337.1468858806549 35.277 0.55791 33.024 32.708 33.266 -2.2527 0.048618 -0.00028855 NaN 5.7834 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 989090 4210 2955 2483 2486 -0.0856483784421016 ASSLEEPHS 9 Unmodified _ASSLEEPHS_ 0 0 0 ENSG00000184675|ENST00000374869|AMER1;AMER1|p.G1103Vfs*36|1|0.05|ENSG00000184675|chrX:64189979-64189980|-/TATATATATATATATATATACACACA|frameshift_variant;AMER1|p.F313Lfs*4|1|0.6|ENSG00000184675|chrX:64192348-64192348|A/-|frameshift_variant;AMER1|p.G348Afs*16|1|0.55|ENSG00000184675|chrX:64192244-64192244|C/-|frameshift_variant;AMER1|p.E370Rfs*10|1|0.7|ENSG00000184675|chrX:64192179-64192180|-/CCCACCT|frameshift_variant;AMER1|p.W410Gfs*12|1|0.34|ENSG00000184675|chrX:64192059-64192059|A/-|frameshift_variant;AMER1|p.E485Ifs*48|1|0.75|ENSG00000184675|chrX:64191811-64191835|CCTGCGGACAAGCCCCAGGGCCTCA/-|frameshift_variant;AMER1|p.E510Mfs*32|1|0.77|ENSG00000184675|chrX:64191759-64191760|-/AT|frameshift_variant;AMER1|p.E752*|1|0.4|ENSG00000184675|chrX:64191034-64191035|-/G|frameshift_variant;nc|ENSG00000184675|Q5JTC6-2|AMER1 ENSG00000184675|ENST00000374869|AMER1 ENSG00000184675|ENST00000374869|AMER1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72198486328125 2 478.719621 955.42469 NaN NaN NaN NaN NaN NaN NaN 40.296 1 37.661 37.161 38.161 -2.6348 0 0 0 0.22251 1 7505 7505 16.942 3.8998 1 4211 146 2484 2487 4572 4572 -0.054805766211757145 ASSPRGSEEYY 11 Unmodified _ASSPRGSEEYY_ 0 0 0 ENSG00000175707|ENST00000320567|KDF1 ENSG00000175707|ENST00000320567|KDF1 ENSG00000175707|ENST00000320567|KDF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7537841796875 2 623.272749 1244.53095 0.40853 0.00025462 -0.11367 -7.0848E-05 0.29485 0.00018377 623.272779174221 32.728 0.55542 32.728 32.399 32.954 0 18 15 2 0 0 0 0.8834 1 5958 5958 20.581 9.0862 1 1715300 4212 6428 2485 2488 4573 4573 -0.08153865846497865 ASSPRGSEEYY 11 Unmodified _ASSPRGSEEYY_ 0 0 0 ENSG00000175707|ENST00000320567|KDF1 ENSG00000175707|ENST00000320567|KDF1 ENSG00000175707|ENST00000320567|KDF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7679443359375 2 623.272749 1244.53095 0.4036 0.00025155 -0.27633 -0.00017223 0.12727 7.9322E-05 623.2724242619075 35.187 0.31079 32.935 32.708 33.019 -2.2527 15 8 2 0 0 0 0.88957 1 6209 6209 3.0723 3.0285 1 1604100 4213 6428 2485 2488 4574 4574 -0.08153865846497865 ASSPRGSEEYY 11 Unmodified _ASSPRGSEEYY_ 0 0 0 ENSG00000175707|ENST00000320567|KDF1 ENSG00000175707|ENST00000320567|KDF1 ENSG00000175707|ENST00000320567|KDF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7626953125 2 623.272749 1244.53095 0.53362 0.00033259 -0.15221 -9.4866E-05 0.38142 0.00023773 623.272739695785 35.154 0.37808 32.877 32.659 33.037 -2.2766 19 10 2 0 0 0 0.8834 1 6150 6150 20.581 12.671 1 1489600 4214 6428 2485 2488 4575 4575 -0.08153865846497865 ASSPRGSEEYY 11 Unmodified _ASSPRGSEEYY_ 0 0 0 ENSG00000175707|ENST00000320567|KDF1 ENSG00000175707|ENST00000320567|KDF1 ENSG00000175707|ENST00000320567|KDF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 623.272749 1244.53095 0.6864 0.00042781 -0.19039 -0.00011866 0.49601 0.00030915 623.2724897555113 35.281 0.42038 32.887 32.634 33.055 -2.3938 0.029916 -1.0789E-06 NaN 20.581 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1995600 4215 6428 2485 2488 -0.08153865846497865 ASSQIWIYGG 10 Unmodified _ASSQIWIYGG_ 0 0 0 REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2698974609375 2 541.269281 1080.52401 0.14148 7.6581E-05 -1.3749 -0.0007442 -1.2334 -0.00066762 541.2683349421172 139.32 0.21968 134.37 134.31 134.53 -4.952 7 5 2 0 0 0 0.51199 1 26812 26812 24.021 0 1 700230 + 4216 17060 2486 2489 4576 4576 -0.01303133936426093 ASSQIWIYGG 10 Unmodified _ASSQIWIYGG_ 0 0 0 REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 541.269281 1080.52401 0.14148 7.6581E-05 -1.3749 -0.0007442 -1.2334 -0.00066762 541.2683349421172 139.32 0.21968 134.37 134.31 134.53 -4.952 0 0 NaN 24.021 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 700230 + 4217 17060 2486 2489 -0.01303133936426093 ASSTKVQVT 9 Unmodified _ASSTKVQVT_ 0 0 0 REV__nc|ENSG00000138347|Q86TC9-2|MYPN REV__nc|ENSG00000138347|Q86TC9-2|MYPN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.240478515625 2 460.756007 919.497461 -0.052611 -2.4241E-05 -0.60132 -0.00027706 -0.65393 -0.0003013 460.7556971570159 79.179 0.87832 75.669 75.311 76.189 -3.5102 52 24 3 0 0 0 0.10537 1 15434 15434 2.8827 2.0075 1 5520600 + 4218 24060 2487 2490 4577 4577 0.0344917717224007 ASSTTVTPVP 10 Unmodified _ASSTTVTPVP_ 0 0 0 REV__ENSG00000111676|ENST00000396684|ATN1 REV__ENSG00000111676|ENST00000396684|ATN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78289794921875 2 480.25584 958.497126 0.1544 7.4154E-05 -0.31369 -0.00015065 -0.15928 -7.6495E-05 480.2556856615837 36.019 1.877 33.767 32.392 34.269 -2.2527 135 53 5 0 0 0 0.30531 1 6336 6336 11.57 9.6558 1 113110000 + 4219 15254 2488 2491 4578 4578 0.016217574523807343 ASSTWSNN 8 Unmodified _ASSTWSNN_ 0 0 0 REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 433.8889465332031 2 433.685581 865.35661 0.18344 7.9554E-05 -0.7809 -0.00033867 -0.59746 -0.00025911 433.6851974265995 33.65 1.4952 31.503 30.623 32.118 -2.1468 69 42 2 0 0 0 1.0191 1 5754 5754 4.756 0 1 1134400 + 4220 23940 2489 2492 4579 4579 -0.08145401481192494 ASSWTLNTSV 10 Unmodified _ASSWTLNTSV_ 0 0 0 REV__ENSG00000170382|ENST00000367177|LRRN2 REV__ENSG00000170382|ENST00000367177|LRRN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2772827148438 2 533.264196 1064.51384 0.71045 0.00037886 -1.3319 -0.00071024 -0.62143 -0.00033138 533.2635982273583 87.722 0.52773 83.727 83.447 83.975 -3.9953 17 14 2 0 0 0 0.28382 1 16656 16656 1.0651 0 1 1672700 + 4221 18159 2490 2493 4580 4580 -0.015837416616705013 ASTAALKL 8 Unmodified _ASTAALKL_ 0 0 0 REV__ENSG00000130414|ENST00000252711|NDUFA10 REV__ENSG00000130414|ENST00000252711|NDUFA10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.71527099609375 2 387.739628 773.464704 NaN NaN NaN NaN NaN NaN NaN 27.739 1 25.743 25.243 26.243 -1.9962 0 0 0 0.23899 1 4652 4652 1.3295 0 1 + 4222 16004 2491 2494 4581 4581 0.06891014840027765 ASTICHNK 8 Unmodified _ASTICHNK_ 0 0 0 REV__ENST00000420918.3_1_2:61370985-61372055:-|nuORF REV__ENST00000420918.3_1_2:61370985-61372055:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2162170410156 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 131.75 1 126.95 126.45 127.45 -4.799 0 0 0 0.21486 1 25364 25364 9.3474 4.1168 1 + 4223 21476 2492 2495 4582 4582 -0.023875877025943737 ASTPCCPEL 9 Unmodified _ASTPCCPEL_ 0 0 0 REV__nc|ENSG00000188089|Q3MJ16|PLA2G4E REV__nc|ENSG00000188089|Q3MJ16|PLA2G4E MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2334289550781 2 460.696246 919.377939 NaN NaN NaN NaN NaN NaN NaN 157.05 1 152.26 151.76 152.76 -4.7885 0 0 0 0.19649 1 31230 31230 0.12781 0.0049496 1 + 4224 19132 2493 2496 4583 4583 -0.08497475768331242 ASTYRFIW 8 Unmodified _ASTYRFIW_ 0 0 0 REV__nc|ENSG00000077327|O75602-2|SPAG6 REV__nc|ENSG00000077327|O75602-2|SPAG6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2686767578125 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 90.624 1 90.624 90.124 91.124 0 0 0 0 0.21486 1 17706 17706 8.5933 1.304 1 + 4225 23952 2494 2497 4584 4584 0.004054911343700951 ASVCCTGSCYS 11 Unmodified _ASVCCTGSCYS_ 0 0 0 nc|ENSG00000082126|Q96JB8-5|MPP4;MPP4|p.N559Mfs*12|1|0.06|ENSG00000082126|chr2:201647734-201647734|T/-|frameshift_variant;nc|ENSG00000082126|Q96JB8-2|MPP4;nc|ENSG00000082126|Q96JB8-4|MPP4;ENSG00000082126|ENST00000409474|MPP4 nc|ENSG00000082126|Q96JB8-5|MPP4 nc|ENSG00000082126|Q96JB8-5|MPP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.8402099609375 3 360.79801 1079.3722 -0.19727 -7.1176E-05 1.2169 0.00043906 1.0196 0.00036789 361.1327185640097 28.944 0.17596 28.944 28.845 29.021 0 5 4 2 0 0 0 0.88655 1 5167 5167 0.03141 0 1 546300 4226 1634 2495 2498 4585 4585 -0.16430942342321941 ASVHLLAAQR 10 Unmodified _ASVHLLAAQR_ 0 0 0 REV__ENSG00000206113|ENST00000635017|CFAP99 REV__ENSG00000206113|ENST00000635017|CFAP99 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2702026367188 2 533.311815 1064.60908 -0.63811 -0.00034031 1.0205 0.00054426 0.38242 0.00020395 533.3122921223155 21.6 0.45359 19.878 19.667 20.121 -1.7211 27 12 3 0 0 0 0.5575 1 3403 3403 21.537 7.1316 1 3420500 + 4227 19615 2496 2499 4586 4586 0.07935656320023554 ASVHPEFDY 9 Unmodified _ASVHPEFDY_ 0 0 0 REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2610473632812 2 532.737814 1063.46108 0.61641 0.00032838 -3.1893 -0.0016991 -2.5729 -0.0013707 533.2379277667108 33.301 0.3847 31.154 30.937 31.321 -2.1468 24 10 3 0 0 0 0.48644 1 5789 5789 20.454 5.2051 1 519780 + 4228 18690 2497 2500 4587 4587 -0.0681169972447151 ASVHPEFDY 9 Unmodified _ASVHPEFDY_ 0 0 0 REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.737814 1063.46108 0.61641 0.00032838 -3.1893 -0.0016991 -2.5729 -0.0013707 533.2379277667108 33.301 0.3847 31.154 30.937 31.321 -2.1468 0.016281 0.00067563 NaN 20.454 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 519780 + 4229 18690 2497 2500 -0.0681169972447151 ASVKIVWL 8 Unmodified _ASVKIVWL_ 0 0 0 REV__ENST00000465487.5_1_3:27418257-27433320:-|nuORF REV__ENST00000465487.5_1_3:27418257-27433320:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2319030761719 2 458.286746 914.558939 NaN NaN NaN NaN NaN NaN NaN 62.697 1 62.697 62.197 63.197 0 0 0 0 0.21323 1 12042 12042 14.582 5.2343 1 + 4230 14024 2498 2501 4588 4588 0.09824153662179924 ASWERFCPRCW 11 Unmodified _ASWERFCPRCW_ 0 0 0 REV__ENST00000397333.3_1_12:132626500-132626904:-|nuORF REV__ENST00000397333.3_1_12:132626500-132626904:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.238037109375 3 480.881508 1439.62269 -1.6626 -0.00079952 0.22738 0.00010934 -1.4352 -0.00069018 480.8816872916867 14.331 0.42693 13.121 12.819 13.246 -1.2106 21 11 2 0 0 0 0.82392 1 1847 1847 0.45452 0 1 547200 + 4231 21300 2499 2502 4589 4589 -0.07953177234685427 ASYHPWVP 8 Unmodified _ASYHPWVP_ 0 0 0 REV__GRIN2C|p.R389H|1|0.33|ENSG00000161509|chr17:74850715-74850715|C/T|missense_variant REV__GRIN2C|p.R389H|1|0.33|ENSG00000161509|chr17:74850715-74850715|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73553466796875 2 478.734877 955.455202 NaN NaN NaN NaN NaN NaN NaN 22.791 1 21.238 20.738 21.738 -1.5532 0 0 0 0.23749 1 3909 3909 0.62683 0 1 + 4232 23594 2500 2503 4590 4590 -0.024307534454806046 ASYKIVIEG 9 Unmodified _ASYKIVIEG_ 0 0 0 nc|ENSG00000104755|Q99965-2|ADAM2;ENSG00000104755|ENST00000265708|ADAM2 nc|ENSG00000104755|Q99965-2|ADAM2 nc|ENSG00000104755|Q99965-2|ADAM2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2751159667969 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 92.87 1 89.026 88.526 89.526 -3.844 0 0 0 0.23508 1 17799 17799 7.2892 1.0834 1 4233 2252 2501 2504 4591 4591 0.04846938211710494 ASYVLEHLY 9 Unmodified _ASYVLEHLY_ 0 0 0 ENSG00000153002|ENST00000282957|CPB1 ENSG00000153002|ENST00000282957|CPB1 ENSG00000153002|ENST00000282957|CPB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7816162109375 2 547.779482 1093.54441 0.16423 8.9963E-05 2.4049 0.0013174 2.5692 0.0014073 547.7803149931319 66.89 0.10622 63.781 63.72 63.826 -3.1086 4 2 2 0 0 0 0.37087 1 12975 12975 4.7159 3.024 1 585060 4234 4951 2502 2505 4592 4592 0.0013803672338781325 ATAAAAPCARL 11 Unmodified _ATAAAAPCARL_ 0 0 0 ENST00000379692.8_1_4:121993476-121993653:-|nuORF ENST00000379692.8_1_4:121993476-121993653:-|nuORF ENST00000379692.8_1_4:121993476-121993653:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 508.2777404785156 2 508.271301 1014.52805 NaN NaN NaN NaN NaN NaN NaN 147.46 1 142.31 141.81 142.81 -5.1557 0 0 0 0.22943 1 28536 28536 8.7454 0.15213 1 4235 9304 2503 2506 4593 4593 0.021366322856238185 ATAAAEFQ 8 Unmodified _ATAAAEFQ_ 0 0 0 ENSG00000116819|ENST00000373235|TFAP2E ENSG00000116819|ENST00000373235|TFAP2E ENSG00000116819|ENST00000373235|TFAP2E MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 809.3883666992188 1 808.383559 807.376283 0.31787 0.00025696 0.12165 9.8336E-05 0.43951 0.00035529 808.3835834706108 56.25 1.8672 53.356 52.686 54.553 -2.8944 119 53 3 0 0 0 0.16192 1 10697 10697 50.855 8.7605 1 10251000 4236 2956 2504 2507 4594 4594 -0.0351102547043638 ATAAAEFQ 8 Unmodified _ATAAAEFQ_ 0 0 0 ENSG00000116819|ENST00000373235|TFAP2E ENSG00000116819|ENST00000373235|TFAP2E ENSG00000116819|ENST00000373235|TFAP2E MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 808.383559 807.376283 0.21165 0.0001711 0.22392 0.00018101 0.43557 0.00035211 808.3836558654352 56.552 1.918 53.376 52.622 54.54 -3.1761 0.010328 4.6411E-05 NaN 50.855 118 53 3 NaN NaN NaN NaN 0 NaN NaN 0 10494000 4237 2956 2504 2507 -0.0351102547043638 ATAAAPVAWA 10 Unmodified _ATAAAPVAWA_ 0 0 0 ENST00000294599.8_1_1:3407490-3411287:-|nuORF;ENST00000356575.8_1_1:3407490-3411251:-|nuORF ENST00000294599.8_1_1:3407490-3411287:-|nuORF ENST00000294599.8_1_1:3407490-3411287:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2497863769531 2 464.747985 927.481417 0.048519 2.2549E-05 0.032229 1.4978E-05 0.080748 3.7528E-05 464.7479402343434 60.306 0.59967 56.992 56.764 57.364 -3.3139 22 16 2 0 0 0 0.48672 1 11228 11228 25.399 4.9457 1 865080 4238 8489 2505 2508 4595 4595 0.014775157259805383 ATAAEQVEP 9 Unmodified _ATAAEQVEP_ 0 0 0 REV__ENST00000290271.6_1_8:23712148-23712316:-|nuORF REV__ENST00000290271.6_1_8:23712148-23712316:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22467041015625 2 458.224539 914.434526 0.58336 0.00026731 -1.0178 -0.00046637 -0.43442 -0.00019906 458.22400815825245 45.951 1.2127 45.951 45.413 46.626 0 89 34 4 0 0 0 0.46541 1 8736 8736 21.747 0 1 24594000 + 4239 20350 2506 2509 4596 4596 -0.026113886158100286 ATAAQMRT 8 Unmodified _ATAAQMRT_ 0 0 0 ENST00000355439.6_1_1:1670833-1670878:-|nuORF ENST00000355439.6_1_1:1670833-1670878:-|nuORF ENST00000355439.6_1_1:1670833-1670878:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24359130859375 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 109.7 1 105.25 104.75 105.75 -4.4518 0 0 0 0.23025 1 21055 21055 0.12286 0.11459 1 4240 8954 2507 2510 4597 4597 -0.012835877025963782 ATAEHDSSQV 10 Unmodified _ATAEHDSSQV_ 0 0 0 REV__ENST00000579735.1_1_18:1362647-1362968:-|nuORF REV__ENST00000579735.1_1_18:1362647-1362968:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2656860351562 2 522.73326 1043.45197 -0.11809 -6.1728E-05 -3.9903 -0.0020858 -4.1084 -0.0021476 523.2343492327333 147.03 0.17691 142.35 142.26 142.44 -4.6868 6 4 2 0 0 0 0.871 1 29152 29152 3.2813 2.6798 1 2904700 + 4241 23229 2508 2511 4598 4598 -0.06802093080796112 ATAELYMFH 9 Unmodified _ATAELYMFH_ 0 0 0 REV__ENSG00000204740|ENST00000454679|MALRD1 REV__ENSG00000204740|ENST00000454679|MALRD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2673950195312 2 541.75241 1081.49027 NaN NaN NaN NaN NaN NaN NaN 34.394 1 32.076 31.576 32.576 -2.3175 0 0 0 0.16428 1 6313 6313 28.487 5.7506 1 + 4242 19564 2509 2512 4599 4599 -0.047218786998428186 ATAEPLELDP 10 Unmodified _ATAEPLELDP_ 0 0 0 REV__ENST00000374825.8_1_6:32948646-32949051:+|nuORF REV__ENST00000374825.8_1_6:32948646-32949051:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 528.2651977539062 2 528.266404 1054.51826 NaN NaN NaN NaN NaN NaN NaN 49.574 1 46.567 46.067 47.067 -3.0068 0 0 0 0.22576 1 9095 9095 14.838 2.3067 1 + 4243 21060 2510 2513 4600 4600 -0.006822772387749865 ATAESMSAY 9 Unmodified _ATAESMSAY_ 0 0 0 tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1 tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1 tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2550964355469 2 465.6973 929.380048 0.16292 7.5874E-05 0.11917 5.5497E-05 0.2821 0.00013137 465.6973486318933 24.704 0.50662 24.704 24.44 24.947 0 27 14 3 0 0 0 0.32599 1 4264 4264 28.487 0 1 1850700 4244 26290 2511 2514 4601 4601 -0.08746723758883945 ATAFRGTKQ 9 Unmodified _ATAFRGTKQ_ 0 0 0 REV__ENST00000475058.5_1_4:104000861-104006895:-|nuORF REV__ENST00000475058.5_1_4:104000861-104006895:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2711181640625 2 490.269616 978.524678 NaN NaN NaN NaN NaN NaN NaN 16.962 1 15.746 15.246 16.246 -1.2159 0 0 0 0.22251 1 2696 2696 16.942 0 1 + 4245 17639 2512 2515 4602 4602 0.03455705503290574 ATAFTPHLSAA 11 Unmodified _ATAFTPHLSAA_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant;MUC16|p.S4774Ffs*12|1|0.01|ENSG00000181143|chr19:8962451-8962452|-/AC|frameshift_variant;MUC16|p.I2885Dfs*9|1|0.28|ENSG00000181143|chr19:8972486-8972487|-/C|frameshift_variant;MUC16|p.N2936Tfs*6|1|0.17|ENSG00000181143|chr19:8972332-8972332|T/-|frameshift_variant;MUC16|p.H3632Pfs*17|1|0.13|ENSG00000181143|chr19:8965875-8965876|-/G|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7815551757812 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 25.853 1 25.853 25.353 26.353 0 0 0 0 0.22862 1 4505 4505 9.3831 0.035688 1 4246 6711 2513 2516 4603 4603 0.01120554954900399 ATAGCLNQVPL 11 Unmodified _ATAGCLNQVPL_ 0 0 0 FOXL2NB|p.A119T|1|0.33|ENSG00000206262|chr3:138950399-138950399|G/A|missense_variant FOXL2NB|p.A119T|1|0.33|ENSG00000206262|chr3:138950399-138950399|G/A|missense_variant FOXL2NB|p.A119T|1|0.33|ENSG00000206262|chr3:138950399-138950399|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7841186523438 2 543.784241 1085.55393 0.81454 0.00044293 -1.2265 -0.00066695 -0.41195 -0.00022401 543.7837233856028 106.2 1.5902 102.11 101.16 102.75 -4.0913 145 45 5 0 0 0 0.6353 1 20529 20529 16.149 2.2431 1 30328000 4247 11824 2514 2517 4604 4604 0.0145748173724769 ATAGDIAHY 9 Unmodified _ATAGDIAHY_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1;OSGIN1|p.T288Pfs*18|1|0.47|ENSG00000140961|chr16:83965181-83965181|G/-|frameshift_variant ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2460021972656 2 459.719424 917.424296 -0.10004 -4.599E-05 0.64245 0.00029535 0.54241 0.00024936 459.7195542434131 45.687 0.90386 42.847 42.512 43.415 -2.8409 45 25 3 0 0 0 0.49001 1 8592 8592 36.044 25.22 1 3808900 4248 4335 2515 2518 4605 4605 -0.03771951550390895 ATAGDIAHYY 10 Unmodified _ATAGDIAHYY_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1;OSGIN1|p.T288Pfs*18|1|0.47|ENSG00000140961|chr16:83965181-83965181|G/-|frameshift_variant ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2747802734375 2 541.251089 1080.48762 0.49753 0.00026929 -1.0974 -0.00059395 -0.59984 -0.00032467 541.250369660558 75.822 0.85749 75.822 75.344 76.201 0 39 24 2 0 0 0 0.71097 1 14807 14807 10.074 0.6908 1 7242800 4249 4335 2516 2519 4606 4606 -0.04940010833138331 ATAGDIAHYY 10 Unmodified _ATAGDIAHYY_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1;OSGIN1|p.T288Pfs*18|1|0.47|ENSG00000140961|chr16:83965181-83965181|G/-|frameshift_variant ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1693115234375 3 361.169818 1080.48762 NaN NaN NaN NaN NaN NaN NaN 136.86 1 132.22 131.72 132.72 -4.6399 0 0 0 0.22588 1 27002 27002 3.3196 1.0369 1 4250 4335 2516 2519 4607 4607 -0.04940010833138331 ATAGDIAHYY 10 Unmodified _ATAGDIAHYY_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1;OSGIN1|p.T288Pfs*18|1|0.47|ENSG00000140961|chr16:83965181-83965181|G/-|frameshift_variant ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26318359375 2 541.251089 1080.48762 0.24448 0.00013232 -0.32723 -0.00017711 -0.082748 -4.4787E-05 541.2508104318249 79.535 0.63466 76.025 75.659 76.294 -3.5102 31 17 2 0 0 0 0.084089 1 15517 15517 85.272 61.251 1 3482200 4251 4335 2516 2519 4608 4608 -0.04940010833138331 ATAGDIAHYY 10 Unmodified _ATAGDIAHYY_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1;OSGIN1|p.T288Pfs*18|1|0.47|ENSG00000140961|chr16:83965181-83965181|G/-|frameshift_variant ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2630004882812 2 541.251089 1080.48762 0.0041527 2.2476E-06 -0.37222 -0.00020146 -0.36806 -0.00019921 541.2508161814784 79.781 0.77962 75.976 75.646 76.425 -3.8048 38 21 3 0 0 0 0.48672 1 15211 15211 25.399 14.575 1 3532300 4252 4335 2516 2519 4609 4609 -0.04940010833138331 ATAGDIAHYY 10 Unmodified _ATAGDIAHYY_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1;OSGIN1|p.T288Pfs*18|1|0.47|ENSG00000140961|chr16:83965181-83965181|G/-|frameshift_variant ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2620239257812 2 541.251089 1080.48762 -0.022518 -1.2188E-05 -0.50216 -0.0002718 -0.52468 -0.00028398 541.2506682976623 79.567 0.66209 75.891 75.585 76.247 -3.676 27 18 2 0 0 0 0.11948 1 15214 15214 54.774 36.627 1 1850200 4253 4335 2516 2519 4610 4610 -0.04940010833138331 ATAGDIAHYY 10 Unmodified _ATAGDIAHYY_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1;OSGIN1|p.T288Pfs*18|1|0.47|ENSG00000140961|chr16:83965181-83965181|G/-|frameshift_variant ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2660522460938 2 541.251089 1080.48762 0.63383 0.00034306 -1.6656 -0.00090149 -1.0317 -0.00055843 541.2497280284899 29.994 0.14088 27.919 27.796 27.937 -2.0743 5 3 2 0 0 0 0.871 1 5108 5108 6.2058 0.47393 1 160930 4254 4335 2516 2519 4611 4611 -0.04940010833138331 ATAHGGGG 8 Unmodified _ATAHGGGG_ 0 0 0 REV__ENST00000468589.5_1_1:197704780-197744549:-|nuORF REV__ENST00000468589.5_1_1:197704780-197744549:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1477966308594 2 314.145895 626.277237 NaN NaN NaN NaN NaN NaN NaN 35.416 1 33.163 32.663 33.663 -2.2527 0 0 0 0.21486 1 6240 6240 2.5775 1.7838 1 + 4255 21999 2517 2520 4612 4612 -0.05085003644660446 ATAHGGGG 8 Unmodified _ATAHGGGG_ 0 0 0 REV__ENST00000468589.5_1_1:197704780-197744549:-|nuORF REV__ENST00000468589.5_1_1:197704780-197744549:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1457824707031 2 314.145895 626.277237 NaN NaN NaN NaN NaN NaN NaN 49.853 1 46.846 46.346 47.346 -3.0068 0 0 0 0.21486 1 9150 9150 2.5775 1.8871 1 + 4256 21999 2517 2520 4613 4613 -0.05085003644660446 ATAHGGGG 8 Unmodified _ATAHGGGG_ 0 0 0 REV__ENST00000468589.5_1_1:197704780-197744549:-|nuORF REV__ENST00000468589.5_1_1:197704780-197744549:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.3143005371094 2 314.145895 626.277237 NaN NaN NaN NaN NaN NaN NaN 50.983 1 47.931 47.431 48.431 -3.0517 0 0 0 0.21486 1 9383 9383 2.5775 0.27475 1 + 4257 21999 2517 2520 4614 4614 -0.05085003644660446 ATAHPDDVM 9 Unmodified _ATAHPDDVM_ 0 0 0 REV__ENST00000301764.11_1_11:61066939-61067056:-|nuORF REV__ENST00000301764.11_1_11:61066939-61067056:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73779296875 2 478.710742 955.406931 -0.15236 -7.2935E-05 0.57561 0.00027555 0.42325 0.00020261 478.71098889669423 56.096 1.3373 53.201 52.863 54.2 -2.8944 79 38 3 0 0 0 0.25702 1 10940 10940 34.102 5.6156 1 19082000 + 4258 20410 2518 2521 4615 4615 -0.0725561514769879 ATAHPDDVM 9 Unmodified _ATAHPDDVM_ 0 0 0 REV__ENST00000301764.11_1_11:61066939-61067056:-|nuORF REV__ENST00000301764.11_1_11:61066939-61067056:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72320556640625 2 478.710742 955.406931 NaN NaN NaN NaN NaN NaN NaN 57.334 1 54.158 53.658 54.658 -3.1761 0 0 0 0.16428 1 10686 10686 28.487 11.545 1 + 4259 20410 2518 2521 4616 4616 -0.0725561514769879 ATAILKKKTI 10 Unmodified _ATAILKKKTI_ 0 0 0 ENST00000597828.5_1_3:181417563-181457401:+|nuORF;ENST00000600801.5_1_3:181417563-181457401:+|nuORF ENST00000597828.5_1_3:181417563-181457401:+|nuORF ENST00000597828.5_1_3:181417563-181457401:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.781494140625 2 543.865892 1085.71723 NaN NaN NaN NaN NaN NaN NaN 118.59 1 114.08 113.58 114.58 -4.502 0 0 0 2.8426 1 23383 23383 0.26539 0 1 4260 11679 2519 2522 4617 4617 0.1778002785060835 ATAISTTEE 9 Unmodified _ATAISTTEE_ 0 0 0 REV__nc|ENSG00000147130|Q14202-2|ZMYM3 REV__nc|ENSG00000147130|Q14202-2|ZMYM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.522216796875 2 461.72183 921.429106 0.089536 4.1341E-05 0.29557 0.00013647 0.38511 0.00017781 461.72193471265894 35.977 1.0728 33.725 33.333 34.406 -2.2527 67 30 3 0 0 0 0.77734 1 6458 6458 13.906 1.6654 1 4348600 + 4261 16920 2520 2523 4618 4618 -0.03475112198282204 ATALAQEIG 9 Unmodified _ATALAQEIG_ 0 0 0 tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.215576171875 2 437.23745 872.460347 0.17938 7.8431E-05 -0.086583 -3.7857E-05 0.092797 4.0574E-05 437.2372230418536 28.613 0.7307 26.617 26.381 27.111 -1.9962 26 20 2 0 0 0 0.64382 1 4882 4882 10.074 2.1638 1 557520 4262 26098 2521 2524 4619 4619 0.01901505626483413 ATALERLTGL 10 Unmodified _ATALERLTGL_ 0 0 0 nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3;nc|ENSG00000083067|Q9HCF6-10|TRPM3;TRPM3|p.S1466Ffs*8|1|0.04|ENSG00000083067|chr9:70536682-70536683|-/CGTTCCAAAA|frameshift_variant nc|ENSG00000083067|Q9HCF6-8|TRPM3 nc|ENSG00000083067|Q9HCF6-8|TRPM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2734375 2 522.806031 1043.59751 0.25035 0.00013088 -0.18861 -9.8605E-05 0.061739 3.2277E-05 522.8058393286761 52.526 0.25079 52.526 52.394 52.644 0 10 6 2 0 0 0 0.90598 1 9965 9965 1.1933 0.32897 1 2067700 4263 1646 2522 2525 4620 4620 0.07745414506030102 ATALFGFIVAA 11 Unmodified _ATALFGFIVAA_ 0 0 0 REV__nc|ENSG00000183723|Q8IZR5-3|CMTM4 REV__nc|ENSG00000183723|Q8IZR5-3|CMTM4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.26806640625 2 540.808042 1079.60153 0.16343 8.8386E-05 0.49465 0.00026751 0.65809 0.0003559 541.3103693274091 141.49 0.46156 136.5 136.1 136.56 -4.9877 15 12 2 0 0 0 0.68099 1 27167 27167 13.042 0 1 4186300 + 4264 18855 2523 2526 4621 4621 0.06491503999768611 ATALHHLS 8 Unmodified _ATALHHLS_ 0 0 0 TRAK2|p.R488H|1|0.36|ENSG00000115993|chr2:201387936-201387936|C/T|missense_variant TRAK2|p.R488H|1|0.36|ENSG00000115993|chr2:201387936-201387936|C/T|missense_variant TRAK2|p.R488H|1|0.36|ENSG00000115993|chr2:201387936-201387936|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2433166503906 2 425.232502 848.450451 0.16438 6.9899E-05 1.0626 0.00045184 1.227 0.00052174 425.2330299313732 26.118 0.68578 26.118 25.74 26.426 0 33 19 2 0 0 0 0.93477 1 4556 4556 18.135 1.1927 1 2247100 4265 26513 2524 2527 4622 4622 0.020163624117685686 ATALLGTPQG 10 Unmodified _ATALLGTPQG_ 0 0 0 ENST00000602130.5_1_19:41808830-41812642:+|nuORF ENST00000602130.5_1_19:41808830-41812642:+|nuORF ENST00000602130.5_1_19:41808830-41812642:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2492370605469 2 464.758549 927.502546 -0.10883 -5.0578E-05 -0.54328 -0.00025249 -0.6521 -0.00030307 464.75818880242537 57.544 0.41512 57.544 57.41 57.825 0 15 11 2 0 0 0 0.85223 1 10981 10981 8.7454 0 1 482780 4266 11712 2525 2528 4623 4623 0.035894810348509054 ATALPSATTM 10 Unmodified _ATALPSATTM_ 0 0 0 ADAM8|p.G501Afs*144|1|0.25|ENSG00000151651|chr10:133270943-133270943|C/-|frameshift_variant ADAM8|p.G501Afs*144|1|0.25|ENSG00000151651|chr10:133270943-133270943|C/-|frameshift_variant ADAM8|p.G501Afs*144|1|0.25|ENSG00000151651|chr10:133270943-133270943|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7862854003906 2 482.244418 962.474282 -0.0046613 -2.2479E-06 0.71905 0.00034676 0.71439 0.00034451 482.24473030456994 43.312 0.29437 40.546 40.427 40.722 -2.7661 11 7 2 0 0 0 0.70987 1 7838 7838 30.637 5.2372 1 1055800 4267 58 2526 2529 4624 4624 -0.008455849367578594 ATALPSATTM 10 Unmodified _ATALPSATTM_ 0 0 0 ADAM8|p.G501Afs*144|1|0.25|ENSG00000151651|chr10:133270943-133270943|C/-|frameshift_variant ADAM8|p.G501Afs*144|1|0.25|ENSG00000151651|chr10:133270943-133270943|C/-|frameshift_variant ADAM8|p.G501Afs*144|1|0.25|ENSG00000151651|chr10:133270943-133270943|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7808837890625 2 482.244418 962.474282 -0.12427 -5.993E-05 1.1844 0.00057115 1.0601 0.00051122 482.2448531322307 43.334 0.45691 40.728 40.484 40.941 -2.606 19 12 2 0 0 0 0.70987 1 7825 7825 24.021 0 1 852980 4268 58 2526 2529 4625 4625 -0.008455849367578594 ATAMDEDLEE 10 Unmodified _ATAMDEDLEE_ 0 0 0 nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant nc|ENSG00000005810|O75592-2|MYCBP2 nc|ENSG00000005810|O75592-2|MYCBP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21002197265625 3 375.153505 1122.43868 NaN NaN NaN NaN NaN NaN NaN 46.474 1 43.633 43.133 44.133 -2.8409 0 0 0 0.22588 1 8773 8773 8.9762 4.0792 1 4269 996 2527 2530 4626 4626 -0.11763711975049773 ATANLLRFLLL 11 Unmodified _ATANLLRFLLL_ 0 0 0 ENST00000502726.5_1_4:47685742-47840047:-|nuORF;ENST00000503821.5_1_4:47663725-47840047:-|nuORF;nc|ENSG00000145244|Q9Y5Q5-2|CORIN;ENSG00000145244|ENST00000273857|CORIN ENST00000502726.5_1_4:47685742-47840047:-|nuORF ENST00000502726.5_1_4:47685742-47840047:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7769775390625 2 622.889898 1243.76524 0.50837 0.00031666 0.13006 8.1015E-05 0.63843 0.00039767 623.3911062207939 145.16 0.20833 140.22 140.14 140.34 -4.9445 6 5 2 0 0 0 0.96036 1 28057 28057 2.4985 0 1 1492800 4270 4599 2528 2531 4627 4627 0.15311101770657842 ATAPTPQAY 9 Unmodified _ATAPTPQAY_ 0 0 0 REV__nc|ENSG00000078328|Q9NWB1-4|RBFOX1;REV__nc|ENSG00000078328|Q9NWB1-3|RBFOX1 REV__nc|ENSG00000078328|Q9NWB1-4|RBFOX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2283020019531 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 43.39 1 40.624 40.124 41.124 -2.7661 0 0 0 0.23508 1 7834 7834 7.9102 2.1497 1 + 4271 23953;23954 2529 2532 4628 4628 -0.017787808905836755 ATAQLEQI 8 Unmodified _ATAQLEQI_ 0 0 0 REV__CON__Q6IME9 REV__CON__Q6IME9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21722412109375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.736 1 60.321 59.821 60.821 -3.4158 0 0 0 0.21171 1 11912 11912 15.847 4.2069 1 + + 4272 13553 2530 2533 4629 4629 0.019015056264720442 ATAQREEW 8 Unmodified _ATAQREEW_ 0 0 0 nc|ENSG00000138668|Q14103-3|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 331.010009765625 3 330.826163 989.456658 -0.372 -0.00012307 -2.1328 -0.0007056 -2.5048 -0.00082867 330.8255403169584 26.597 0.58352 26.597 26.189 26.773 0 25 16 2 0 0 0 1.0267 1 4646 4646 1.4819 1.4819 1 1187700 4273 4197 2531 2534 4630 4630 -0.038491641473797245 ATARHPRW 8 Unmodified _ATARHPRW_ 0 0 0 FOLH1|p.R17H|1|0.38|ENSG00000086205|chr11:49208360-49208360|C/T|missense_variant FOLH1|p.R17H|1|0.38|ENSG00000086205|chr11:49208360-49208360|C/T|missense_variant FOLH1|p.R17H|1|0.38|ENSG00000086205|chr11:49208360-49208360|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.0157775878906 3 332.182504 993.525681 -0.43979 -0.00014609 -0.65474 -0.00021749 -1.0945 -0.00036358 332.1820988907806 17.434 0.20815 16.162 16.041 16.249 -1.2722 8 5 2 0 0 0 1.0277 1 2544 2544 0.40072 0 1 146240 4274 11823 2532 2535 4631 4631 0.02865964662839815 ATARHPRW 8 Unmodified _ATARHPRW_ 0 0 0 FOLH1|p.R17H|1|0.38|ENSG00000086205|chr11:49208360-49208360|C/T|missense_variant FOLH1|p.R17H|1|0.38|ENSG00000086205|chr11:49208360-49208360|C/T|missense_variant FOLH1|p.R17H|1|0.38|ENSG00000086205|chr11:49208360-49208360|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 332.182504 993.525681 -0.51274 -0.00017032 -1.521 -0.00050527 -2.0338 -0.00067559 332.18193673271617 16.215 0.3133 16.215 15.989 16.302 0 0.041499 -0.00048836 NaN 0.40072 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 243360 4275 11823 2532 2535 0.02865964662839815 ATARHPRW 8 Unmodified _ATARHPRW_ 0 0 0 FOLH1|p.R17H|1|0.38|ENSG00000086205|chr11:49208360-49208360|C/T|missense_variant FOLH1|p.R17H|1|0.38|ENSG00000086205|chr11:49208360-49208360|C/T|missense_variant FOLH1|p.R17H|1|0.38|ENSG00000086205|chr11:49208360-49208360|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 332.182504 993.525681 -0.5024 -0.00016689 -0.72779 -0.00024176 -1.2302 -0.00040865 332.1821543357955 17.455 0.28284 16.144 15.921 16.204 -1.3109 -0.02988 0.00030216 NaN 0.40072 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 198600 4276 11823 2532 2535 0.02865964662839815 ATARKSSPP 9 Unmodified _ATARKSSPP_ 0 0 0 nc|ENSG00000198055|P43250-2|GRK6 nc|ENSG00000198055|P43250-2|GRK6 nc|ENSG00000198055|P43250-2|GRK6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23382568359375 2 457.756341 913.498129 0.30052 0.00013757 -0.1984 -9.0817E-05 0.10213 4.675E-05 457.7561581920247 36.043 0.42802 36.043 35.889 36.317 0 22 11 3 0 0 0 0.27865 1 6647 6647 34.402 0 1 6610200 4277 12548 2533 2536 4632 4632 0.03792016611953386 ATARPYRPY 9 Unmodified _ATARPYRPY_ 0 0 0 ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68171724-68216535:+|nuORF ENSG00000162337|ENST00000294304|LRP5 ENSG00000162337|ENST00000294304|LRP5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7905883789062 2 547.790715 1093.56688 NaN NaN NaN NaN NaN NaN NaN 122.05 1 117.5 117 118 -4.5476 0 0 0 0.21848 1 24057 24057 18.135 1.0221 1 4278 5321 2534 2537 4633 4633 0.02383680911657393 ATARPYRPY 9 Unmodified _ATARPYRPY_ 0 0 0 ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68171724-68216535:+|nuORF ENSG00000162337|ENST00000294304|LRP5 ENSG00000162337|ENST00000294304|LRP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.789306640625 2 547.790715 1093.56688 0.42102 0.00023063 -1.0848 -0.00059425 -0.66378 -0.00036361 548.2917154427448 121.7 0.14037 117.15 117.1 117.24 -4.5476 5 3 2 0 0 0 0.77732 1 24000 24000 7.9102 0.62092 1 473590 4279 5321 2534 2537 4634 4634 0.02383680911657393 ATARTALPPE 10 Unmodified _ATARTALPPE_ 0 0 0 REV__ENSG00000105538|ENST00000222145|RASIP1 REV__ENSG00000105538|ENST00000222145|RASIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.9977722167969 3 342.857463 1025.55056 -0.34784 -0.00011926 0.22817 7.8229E-05 -0.11967 -4.103E-05 342.8574997169218 28.562 1.1122 26.566 25.894 27.007 -1.9962 90 31 4 0 0 0 0.91149 1 4737 4737 3.5871 1.0886 1 5001400 + 4280 14999 2535 2538 4635 4635 0.038805549548897034 ATASCRQHPP 10 Unmodified _ATASCRQHPP_ 0 0 0 ENST00000466757.7_1_10:73472535-73475261:+|nuORF ENST00000466757.7_1_10:73472535-73475261:+|nuORF ENST00000466757.7_1_10:73472535-73475261:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.07366943359375 3 356.506547 1066.49781 -0.57812 -0.0002061 -0.019985 -7.1249E-06 -0.5981 -0.00021323 356.5064729915938 58.988 0.45723 55.783 55.609 56.066 -3.2052 21 12 2 0 0 0 0.91149 1 11006 11006 0.62683 0 1 710230 4281 10138 2536 2539 4636 4636 -0.03277726379565138 ATASERRE 8 Unmodified _ATASERRE_ 0 0 0 REV__nc|ENSG00000182872|P98175-4|RBM10 REV__nc|ENSG00000182872|P98175-4|RBM10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2328186035156 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 105.98 1 105.98 105.48 106.48 0 0 0 0 0.10558 1 20831 20831 1.4551 0.77368 1 + 4282 18806 2537 2540 4637 4637 -0.010580482901445976 ATASLRPQL 9 Unmodified _ATASLRPQL_ 0 0 0 REV__nc|ENSG00000115353|P25103-3|TACR1 REV__nc|ENSG00000115353|P25103-3|TACR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.736572265625 2 478.779816 955.545079 0.15732 7.5323E-05 0.27901 0.00013359 0.43634 0.00020891 478.77994092517923 97.6 0.54791 93.365 93.09 93.638 -4.2348 16 15 2 0 0 0 0.79204 1 18636 18636 7.2892 0 1 612690 + 4283 15424 2538 2541 4638 4638 0.0655287616308442 ATATAARNGP 10 Unmodified _ATATAARNGP_ 0 0 0 CDK13|p.A162Pfs*174|1|0.41|ENSG00000065883|chr7:39951118-39951118|G/-|frameshift_variant CDK13|p.A162Pfs*174|1|0.41|ENSG00000065883|chr7:39951118-39951118|G/-|frameshift_variant CDK13|p.A162Pfs*174|1|0.41|ENSG00000065883|chr7:39951118-39951118|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24176025390625 2 465.243598 928.472643 NaN NaN NaN NaN NaN NaN NaN 48.367 1 45.498 44.998 45.998 -2.869 0 0 0 0.22583 1 9149 9149 13.906 0.39817 1 4284 468 2539 2542 4639 4639 0.0055454208951459805 ATATAPAALE 10 Unmodified _ATATAPAALE_ 0 0 0 ENSG00000188051|ENST00000341130|TMEM221 ENSG00000188051|ENST00000341130|TMEM221 ENSG00000188051|ENST00000341130|TMEM221 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.24200439453125 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 38.119 1 35.65 35.15 36.15 -2.4688 0 0 0 0.22544 1 7055 7055 19.257 3.4098 1 4285 7147 2540 2543 4640 4640 0.010254882809022092 ATATAPAALE 10 Unmodified _ATATAPAALE_ 0 0 0 ENSG00000188051|ENST00000341130|TMEM221 ENSG00000188051|ENST00000341130|TMEM221 ENSG00000188051|ENST00000341130|TMEM221 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24176025390625 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 38.184 1 35.742 35.242 36.242 -2.4419 0 0 0 0.22583 1 6786 6786 13.906 3.8321 1 4286 7147 2540 2543 4641 4641 0.010254882809022092 ATATPEEPPP 10 Unmodified _ATATPEEPPP_ 0 0 0 REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B;REV__SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 504.7476806640625 2 505.245472 1008.47639 -0.025511 -1.2889E-05 0.74786 0.00037785 0.72234 0.00036496 505.24574626191213 40.86 0.74031 38.371 38.04 38.78 -2.4896 57 20 4 0 0 0 0.89521 1 7384 7384 3.5965 0 1 9340800 + 4287 16539;24605 2541 2544 4642 4642 -0.027508329272791343 ATAVAEPGSL 10 Unmodified _ATAVAEPGSL_ 0 0 0 REV__ENST00000216479.7_1_14:77924461-77924521:+|nuORF REV__ENST00000216479.7_1_14:77924461-77924521:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2415466308594 2 458.242732 914.470912 0.54107 0.00024794 -0.16533 -7.5762E-05 0.37574 0.00017218 458.2426248242289 30.327 1.7832 28.252 27.556 29.339 -2.0743 150 50 5 0 0 0 0.48672 1 5069 5069 25.399 4.9457 1 61841000 + 4288 20017 2542 2545 4643 4643 0.010254882809135779 ATAVRRVF 8 Unmodified _ATAVRRVF_ 0 0 0 ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENST00000412860.1_1_7:42834686-42835559:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2330627441406 2 460.277244 918.539935 NaN NaN NaN NaN NaN NaN NaN 157.6 1 152.32 151.82 152.82 -5.2854 0 0 0 0.2343 1 30585 30585 0.25148 0 1 4289 9588 2543 2546 4644 4644 0.07740617091133117 ATAVTSPVSP 10 Unmodified _ATAVTSPVSP_ 0 0 0 ENST00000429709.6_1_3:179280735-179280855:+|nuORF ENST00000429709.6_1_3:179280735-179280855:+|nuORF ENST00000429709.6_1_3:179280735-179280855:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2502136230469 2 465.250557 928.486562 -0.11902 -5.5373E-05 -0.20954 -9.7488E-05 -0.32856 -0.00015286 465.25035627708866 90.665 0.72515 86.805 86.404 87.129 -3.8595 29 20 2 0 0 0 0.53552 1 17721 17721 22.736 5.6234 1 1743700 4290 9765 2544 2547 4645 4645 0.01945774797957256 ATAVTSPVSP 10 Unmodified _ATAVTSPVSP_ 0 0 0 ENST00000429709.6_1_3:179280735-179280855:+|nuORF ENST00000429709.6_1_3:179280735-179280855:+|nuORF ENST00000429709.6_1_3:179280735-179280855:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2497863769531 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 91.051 1 86.956 86.456 87.456 -4.0946 0 0 0 0.22518 1 17348 17348 22.736 0.98964 1 4291 9765 2544 2547 4646 4646 0.01945774797957256 ATAVTSPVSP 10 Unmodified _ATAVTSPVSP_ 0 0 0 ENST00000429709.6_1_3:179280735-179280855:+|nuORF ENST00000429709.6_1_3:179280735-179280855:+|nuORF ENST00000429709.6_1_3:179280735-179280855:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25030517578125 2 465.250557 928.486562 0.15222 7.0821E-05 -0.46422 -0.00021598 -0.312 -0.00014516 465.250142905496 90.798 0.65588 87.02 86.573 87.229 -3.7779 29 18 2 0 0 0 0.53552 1 17380 17380 22.736 5.794 1 938510 4292 9765 2544 2547 4647 4647 0.01945774797957256 ATAWQRFPC 9 Unmodified _ATAWQRFPC_ 0 0 0 ENST00000556553.5_1_14:88851807-88857770:+|nuORF ENST00000556553.5_1_14:88851807-88857770:+|nuORF ENST00000556553.5_1_14:88851807-88857770:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2101135253906 3 360.507888 1078.50183 -0.27011 -9.7376E-05 2.3779 0.00085726 2.1078 0.00075988 360.508650956098 19.921 0.27423 19.921 19.758 20.032 0 13 7 2 0 0 0 0.85359 1 3260 3260 4.5289 1.7937 1 462930 4293 11242 2545 2548 4648 4648 -0.03427636885840002 ATAYEITF 8 Unmodified _ATAYEITF_ 0 0 0 tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1 tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1 tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22601318359375 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 149.78 1 145.05 144.55 145.55 -4.7323 0 0 0 0.21486 1 29742 29742 9.3474 0.75416 1 4294 26104 2546 2549 4649 4649 -0.02209299122102948 ATCAFRRH 8 Unmodified _ATCAFRRH_ 0 0 0 REV__ENST00000508067.1_2_5:121406451-121411196:-|nuORF REV__ENST00000508067.1_2_5:121406451-121411196:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2450256347656 2 481.242878 960.471203 NaN NaN NaN NaN NaN NaN NaN 86.484 1 82.757 82.257 83.257 -3.727 0 0 0 0.23107 1 16904 16904 0.62683 0 1 + 4295 15326 2547 2550 4650 4650 -0.01061370480226742 ATCGRASTY 9 Unmodified _ATCGRASTY_ 0 0 0 REV__ENST00000441047.1_1_17:51834352-51834658:-|nuORF REV__ENST00000441047.1_1_17:51834352-51834658:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2484436035156 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 114.14 1 109.83 109.33 110.33 -4.3136 0 0 0 0.23508 1 21986 21986 12.532 4.6214 1 + 4296 16606 2548 2551 4651 4651 -0.05980195427855506 ATCLSGLFGTP 11 Unmodified _ATCLSGLFGTP_ 0 0 0 REV__nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 REV__nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2868041992188 2 533.765517 1065.51648 0.15506 8.2765E-05 -0.086096 -4.5955E-05 0.068964 3.681E-05 533.7653511834181 62.861 1.0001 59.9 59.288 60.288 -2.9614 67 28 3 0 0 0 0.53231 1 12104 12104 21.537 4.4241 1 5028900 + 4297 17149 2549 2552 4652 4652 -0.013656095283522518 ATCMAPPM 8 Unmodified _ATCMAPPM_ 0 0 0 REV__ENST00000542541.6_1_19:19049262-19050678:-|nuORF REV__ENST00000542541.6_1_19:19049262-19050678:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.1141662597656 2 411.171353 820.328152 NaN NaN NaN NaN NaN NaN NaN 21.637 1 20.252 19.752 20.752 -1.3847 0 0 0 0.21486 1 3414 3414 5.7604 2.8712 1 + 4298 21215 2550 2553 4653 4653 -0.08919881977988098 ATCPLRRY 8 Unmodified _ATCPLRRY_ 0 0 0 REV__PAQR9|p.F304Sfs*26|1|0.25|ENSG00000188582|chr3:142962426-142962426|A/-|frameshift_variant REV__PAQR9|p.F304Sfs*26|1|0.25|ENSG00000188582|chr3:142962426-142962426|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2614440917969 2 490.260736 978.50692 NaN NaN NaN NaN NaN NaN NaN 16.513 1 15.16 14.66 15.66 -1.3534 0 0 0 0.21486 1 2346 2346 5.7604 0 1 + 4299 19156 2551 2554 4654 4654 0.016806669767674975 ATCRVRPP 8 Unmodified _ATCRVRPP_ 0 0 0 ENST00000295101.2_1_2:155554859-155555222:+|nuORF ENST00000295101.2_1_2:155554859-155555222:+|nuORF ENST00000295101.2_1_2:155554859-155555222:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.1136169433594 2 450.247629 898.480705 NaN NaN NaN NaN NaN NaN NaN 57.362 1 54.186 53.686 54.686 -3.1761 0 0 0 0.21486 1 10691 10691 8.5933 2.2392 1 4300 8492 2552 2555 4655 4655 0.027403978053030187 ATDAVVAGVVG 11 Unmodified _ATDAVVAGVVG_ 0 0 0 REV__ENST00000573596.1_1_17:7080113-7080528:-|nuORF REV__ENST00000573596.1_1_17:7080113-7080528:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24041748046875 2 479.763832 957.513111 0.22433 0.00010763 -0.46048 -0.00022092 -0.23615 -0.0001133 479.7635308414876 33.771 0.9398 31.624 30.902 31.841 -2.1468 61 26 4 0 0 0 0.68099 1 5897 5897 13.042 1.5478 1 18764000 + 4301 23187 2553 2556 4656 4656 0.03265463689297121 ATDEPGKR 8 Unmodified _ATDEPGKR_ 0 0 0 REV__nc|ENSG00000076944|Q15833-2|STXBP2 REV__nc|ENSG00000076944|Q15833-2|STXBP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22393798828125 2 437.224874 872.435195 NaN NaN NaN NaN NaN NaN NaN 25.626 1 25.626 25.126 26.126 0 0 0 0 0.21486 1 4456 4456 5.2307 0 1 + 4302 14354 2554 2557 4657 4657 -0.006125491760940349 ATDEQPHIGNY 11 Unmodified _ATDEQPHIGNY_ 0 0 0 nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1;MARK1|p.K64Dfs*6|1|0.08|ENSG00000116141|chr1:220579491-220579492|-/GATTTCATTGTTAATT|frameshift_variant;MARK1|p.H180Qfs*3|1|0.18|ENSG00000116141|chr1:220615981-220615982|-/A|frameshift_variant nc|ENSG00000116141|Q9P0L2-3|MARK1 nc|ENSG00000116141|Q9P0L2-3|MARK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7819213867188 2 622.780741 1243.54693 NaN NaN NaN NaN NaN NaN NaN 55.375 1 55.375 54.875 55.875 0 0 0 0 0.17063 1 10572 10572 24.991 12.75 1 4303 2910 2555 2558 4658 4658 -0.06510159609592847 ATDGSISAPP 10 Unmodified _ATDGSISAPP_ 0 0 0 nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A;ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.M833Wfs*23|2|0.34|ENSG00000125386|chr4:2696450-2696450|A/-|frameshift_variant;nc|ENSG00000125386|P78312-3|FAM193A nc|ENSG00000125386|P78312-4|FAM193A nc|ENSG00000125386|P78312-4|FAM193A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23828125 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 79.392 1 75.587 75.087 76.087 -3.8048 0 0 0 0.22535 1 15062 15062 20.454 3.5113 1 4304 3356 2556 2559 4659 4659 -0.026113886158213973 ATDGSISAPP 10 Unmodified _ATDGSISAPP_ 0 0 0 nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A;ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.M833Wfs*23|2|0.34|ENSG00000125386|chr4:2696450-2696450|A/-|frameshift_variant;nc|ENSG00000125386|P78312-3|FAM193A nc|ENSG00000125386|P78312-4|FAM193A nc|ENSG00000125386|P78312-4|FAM193A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2246398925781 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 79.424 1 75.619 75.119 76.119 -3.8048 0 0 0 0.22535 1 15069 15069 20.454 3.5113 1 4305 3356 2556 2559 4660 4660 -0.026113886158213973 ATDHAMDI 8 Unmodified _ATDHAMDI_ 0 0 0 ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B ENSG00000078814|ENST00000262873|MYH7B ENSG00000078814|ENST00000262873|MYH7B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2222595214844 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 67.436 1 64.327 63.827 64.827 -3.1086 0 0 0 0.21486 1 13079 13079 9.3474 0 1 4306 1587 2557 2560 4661 4661 -0.07147286693464139 ATDHWRPRL 9 Unmodified _ATDHWRPRL_ 0 0 0 REV__nc|ENSG00000139636|Q6UX01-3|LMBR1L REV__nc|ENSG00000139636|Q6UX01-3|LMBR1L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3339233398438 2 576.307064 1150.59957 NaN NaN NaN NaN NaN NaN NaN 80.436 1 76.597 76.097 77.097 -3.8392 0 0 0 0.22621 1 15266 15266 15.847 3.6065 1 + 4307 16530 2558 2561 4662 4662 0.030298880345071666 ATDINGDDY 9 Unmodified _ATDINGDDY_ 0 0 0 nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-2|ITGAV nc|ENSG00000138448|P06756-2|ITGAV MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 985.3989868164062 1 983.395246 982.38797 -0.21045 -0.00020695 0.39225 0.00038574 0.18181 0.00017879 983.3955491173173 41.4 1.4179 38.765 38.363 39.781 -2.6348 99 40 3 0 0 0 0.6329 1 7787 7787 10.824 4.1008 1 7329200 4308 4173 2559 2562 4663 4663 -0.10392873237753975 ATDINGDDY 9 Unmodified _ATDINGDDY_ 0 0 0 nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-2|ITGAV nc|ENSG00000138448|P06756-2|ITGAV MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 983.4676513671875 1 983.395246 982.38797 0.18284 0.00017981 -0.066077 -6.498E-05 0.11677 0.00011483 983.3951883556373 41.296 1.787 38.756 38.348 40.135 -2.5398 119 50 3 0 0 0 0.029139 1 7611 7611 82.529 51.893 1 5562100 4309 4173 2559 2562 4664 4664 -0.10392873237753975 ATDINGDDY 9 Unmodified _ATDINGDDY_ 0 0 0 nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-2|ITGAV nc|ENSG00000138448|P06756-2|ITGAV MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 983.395246 982.38797 0.16262 0.00015992 -0.10825 -0.00010645 0.05437 5.3467E-05 983.3950781170846 41.376 1.8359 38.887 38.422 40.258 -2.4896 0.084014 -0.00018675 NaN 82.529 122 51 3 NaN NaN NaN NaN 0 NaN NaN 0 4638700 4310 4173 2559 2562 -0.10392873237753975 ATDKHINY 8 Unmodified _ATDKHINY_ 0 0 0 REV__nc|ENSG00000186976|Q5THR3-6|EFCAB6 REV__nc|ENSG00000186976|Q5THR3-6|EFCAB6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2404479980469 2 481.240524 960.466495 -0.27366 -0.0001317 1.5783 0.00075954 1.3046 0.00062785 481.24140725558385 24.85 0.30361 22.997 22.846 23.15 -1.8534 12 8 2 0 0 0 0.52597 1 4069 4069 26.884 0.61551 1 648820 + 4311 13783 2560 2563 4665 4665 -0.015319761420073519 ATDLIELMC 9 Carbamidomethyl (C),Oxidation (M) _ATDLIELM(Oxidation (M))C(Carbamidomethyl (C))_ ATDLIELMC(1) ATDLIELM(1)C ATDLIELMC(85) ATDLIELM(85)C 0 1 1 REV__nc|ENSG00000127314|P61224-2|RAP1B REV__nc|ENSG00000127314|P61224-2|RAP1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2847900390625 2 541.248843 1080.48313 0.36151 0.00019567 0.16994 9.1981E-05 0.53145 0.00028765 541.2488881294993 27.167 0.68382 27.167 26.807 27.49 0 49 19 3 0 0 0 0.026587 2 4774 4751;4774 85.357 7.2073 1 17761000 + 4312 15482 2561 2564 4666;4667 4667 17 121 -0.05388979362578539 ATDLIELMC 9 Carbamidomethyl (C),Oxidation (M) _ATDLIELM(Oxidation (M))C(Carbamidomethyl (C))_ ATDLIELMC(1) ATDLIELM(1)C ATDLIELMC(85) ATDLIELM(85)C 0 1 1 REV__nc|ENSG00000127314|P61224-2|RAP1B REV__nc|ENSG00000127314|P61224-2|RAP1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2677001953125 2 541.248843 1080.48313 0.50538 0.00027354 0.10373 5.6144E-05 0.60911 0.00032968 541.2488988310895 29.081 1.0406 27.084 26.763 27.804 -1.9962 76 29 4 0 0 0 0.026587 1 4923 4923 85.357 10.428 1 21773000 + 4313 15482 2561 2564 4668 4668 17 121 -0.05388979362578539 ATDMRPPK 8 Unmodified _ATDMRPPK_ 0 0 0 REV__ENST00000519806.1_1_8:40532148-40554851:-|nuORF REV__ENST00000519806.1_1_8:40532148-40554851:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2381896972656 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 108.01 1 103.69 103.19 104.19 -4.32 0 0 0 0.21452 1 21279 21279 13.508 0.97634 1 + 4314 17737 2562 2565 4669 4669 0.003732718485366604 ATDPADTHS 9 Unmodified _ATDPADTHS_ 0 0 0 REV__ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant REV__ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22442626953125 2 457.696146 913.377739 0.38208 0.00017488 -1.2102 -0.0005539 -0.82811 -0.00037902 457.6958941010782 38.836 1.1609 38.836 38.211 39.372 0 75 32 3 0 0 0 0.48181 1 7211 7211 1.2148 0.588 1 2802900 + 4315 13049 2563 2566 4670 4670 -0.08241436172340855 ATDPNILGR 9 Unmodified _ATDPNILGR_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72283935546875 2 478.761623 955.508694 -0.11505 -5.5083E-05 1.5116 0.00072369 1.3965 0.00066861 478.7619118020098 57.146 0.4912 54.251 53.993 54.484 -2.8944 19 13 2 0 0 0 0.52396 1 11006 11006 18.146 4.2403 1 645690 4316 7917 2564 2567 4671 4671 0.02915999266383551 ATDPTIHTV 9 Unmodified _ATDPTIHTV_ 0 0 0 nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9 nc|ENSG00000086848|Q9H6U8-2|ALG9 nc|ENSG00000086848|Q9H6U8-2|ALG9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7232971191406 2 477.748182 953.481811 0.15147 7.2362E-05 0.512 0.00024461 0.66347 0.00031697 477.748220008073 43.044 0.89655 43.044 42.639 43.535 0 81 25 4 0 0 0 0.081765 3 8048 8048;8097;8099 61.357 27.255 1 15753000 4317 1702 2565 2568 4672;4673;4674 4672 0.0032089065518903226 ATDPTIHTV 9 Unmodified _ATDPTIHTV_ 0 0 0 nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9 nc|ENSG00000086848|Q9H6U8-2|ALG9 nc|ENSG00000086848|Q9H6U8-2|ALG9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.741943359375 2 477.748182 953.481811 -0.092557 -4.4219E-05 0.63391 0.00030285 0.54135 0.00025863 477.7483177415717 45.932 0.93528 43.065 42.711 43.646 -2.8666 75 26 4 0 0 0 0.057505 1 8367 8367 68.081 32.037 1 14615000 4318 1702 2565 2568 4675 4675 0.0032089065518903226 ATDPTIHTV 9 Unmodified _ATDPTIHTV_ 0 0 0 nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9 nc|ENSG00000086848|Q9H6U8-2|ALG9 nc|ENSG00000086848|Q9H6U8-2|ALG9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.748182 953.481811 -0.01686 -8.0547E-06 0.66299 0.00031674 0.64613 0.00030869 477.74831414353116 45.875 1.0049 43.034 42.654 43.659 -2.8409 -0.023364 7.6942E-05 NaN 68.081 83 28 4 NaN NaN NaN NaN 0 NaN NaN 0 19714000 4319 1702 2565 2568 0.0032089065518903226 ATDPTIHTV 9 Unmodified _ATDPTIHTV_ 0 0 0 nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9 nc|ENSG00000086848|Q9H6U8-2|ALG9 nc|ENSG00000086848|Q9H6U8-2|ALG9 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.748182 953.481811 -0.028355 -1.3546E-05 0.54677 0.00026122 0.51842 0.00024767 477.7482619471379 45.952 0.9647 43.087 42.728 43.692 -2.8653 0.029579 -3.4104E-05 NaN 68.081 71 27 4 NaN NaN NaN NaN 0 NaN NaN 0 17800000 4320 1702 2565 2568 0.0032089065518903226 ATDPWRTL 8 Unmodified _ATDPWRTL_ 0 0 0 REV__ENST00000335181.9_3_15:72492943-72494801:-|nuORF REV__ENST00000335181.9_3_15:72492943-72494801:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2438659667969 2 480.250892 958.48723 -0.32752 -0.00015729 0.3194 0.00015339 -0.0081217 -3.9004E-06 480.25116058977056 58.688 0.89688 58.688 58.279 59.176 0 59 25 3 0 0 0 0.73426 1 11259 11259 9.3474 0 1 4176100 + 4321 20652 2566 2569 4676 4676 0.006326142376565258 ATDSACPALI 10 Unmodified _ATDSACPALI_ 0 0 0 ENST00000361722.7_1_17:45789068-45789260:+|nuORF ENST00000361722.7_1_17:45789068-45789260:+|nuORF ENST00000361722.7_1_17:45789068-45789260:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2361755371094 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 28.734 1 26.738 26.238 27.238 -1.9962 0 0 0 0.22544 1 4860 4860 19.257 2.3147 1 4322 9033 2567 2570 4677 4677 -0.02317871453783482 ATDSLLELPH 10 Unmodified _ATDSLLELPH_ 0 0 0 ENSG00000007968|ENST00000361729|E2F2 ENSG00000007968|ENST00000361729|E2F2 ENSG00000007968|ENST00000361729|E2F2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.778564453125 2 548.287671 1094.56079 0.021881 1.1997E-05 -1.1286 -0.00061879 -1.1067 -0.00060679 548.2873156831058 60.298 0.45287 60.298 60.209 60.662 0 18 12 2 0 0 0 0.26529 1 11548 11548 71.922 22.368 1 3745900 4323 1033 2568 2571 4678 4678 0.017291178894765835 ATDSVSNWY 9 Unmodified _ATDSVSNWY_ 0 0 0 REV__RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant REV__RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2619018554688 2 521.727446 1041.44034 0.37827 0.00019735 1.1337 0.00059147 1.5119 0.00078883 521.728078040975 35.246 0.86719 32.969 32.484 33.352 -2.2766 43 24 2 0 0 0 0.62102 1 6151 6151 11.64 0.81637 1 3836000 + 4324 18544 2569 2572 4679 4679 -0.07872290104137392 ATDTASGTGLY 11 Unmodified _ATDTASGTGLY_ 0 0 0 nc|ENSG00000105732|Q6ZN55-2|ZNF574;ENSG00000105732|ENST00000359044|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1057.4854736328125 1 1056.4844 1055.47712 0.64196 0.00067822 -1.0928 -0.0011546 -0.45087 -0.00047633 1056.483101440908 51.424 1.1585 51.424 51.235 52.394 0 57 32 2 0 0 0 0.46869 1 9924 9924 34.402 19.563 1 14034000 4325 2338 2570 2573 4680 4680 -0.04840038278234715 ATDTASGTGLY 11 Unmodified _ATDTASGTGLY_ 0 0 0 nc|ENSG00000105732|Q6ZN55-2|ZNF574;ENSG00000105732|ENST00000359044|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1056.4833984375 1 1056.4844 1055.47712 -0.41422 -0.00043762 0.020471 2.1628E-05 -0.39375 -0.00041599 1056.4843266869607 54.226 1.0292 51.342 51.218 52.247 -2.8837 55 29 2 0 0 0 5.9106E-10 2 10526 10522;10526 160.52 124.39 1 12067000 4326 2338 2570 2573 4681;4682 4682 -0.04840038278234715 ATDTASGTGLY 11 Unmodified _ATDTASGTGLY_ 0 0 0 nc|ENSG00000105732|Q6ZN55-2|ZNF574;ENSG00000105732|ENST00000359044|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1057.486083984375 1 1056.4844 1055.47712 0.067067 7.0855E-05 -0.53741 -0.00056777 -0.47034 -0.00049691 1056.4837533186244 54.753 1.5259 51.615 51.134 52.66 -3.1377 78 43 2 0 0 0 0.012047 1 10064 10064 92.491 73.234 1 8534200 4327 2338 2570 2573 4683 4683 -0.04840038278234715 ATDTASGTGLY 11 Unmodified _ATDTASGTGLY_ 0 0 0 nc|ENSG00000105732|Q6ZN55-2|ZNF574;ENSG00000105732|ENST00000359044|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 1056.4844 1055.47712 0.29324 0.00030981 -0.86274 -0.00091147 -0.56949 -0.00060166 1056.4834126641072 54.666 1.3646 51.531 51.148 52.512 -3.1352 0.052582 -0.00023545 NaN 160.52 64 38 2 NaN NaN NaN NaN 0 NaN NaN 0 8396800 4328 2338 2570 2573 -0.04840038278234715 ATDTLDRE 8 Unmodified _ATDTLDRE_ 0 0 0 ENST00000489020.1_1_1:20810886-20811114:-|nuORF ENST00000489020.1_1_1:20810886-20811114:-|nuORF ENST00000489020.1_1_1:20810886-20811114:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2406921386719 2 460.719621 919.42469 NaN NaN NaN NaN NaN NaN NaN 55.402 1 52.264 51.764 52.764 -3.1377 0 0 0 0.2074 1 10283 10283 19.439 0 1 4329 10493 2571 2574 4684 4684 -0.03824576621184406 ATDYHVRVY 9 Unmodified _ATDYHVRVY_ 0 0 0 FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;FNDC3B|p.A357V|1|0.31|ENSG00000075420|chr3:172307371-172307371|C/T|missense_variant FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2184753417969 3 375.189212 1122.54581 -0.37444 -0.00014049 0.086071 3.2293E-05 -0.28837 -0.00010819 375.1892539824272 56.796 1.5397 53.901 53.371 54.911 -2.8944 141 43 6 0 0 0 0.17734 3 10962 10791;10962;10992 40.239 17.581 1 163940000 4330 1517 2572 2575 4685;4686;4687 4686 -0.010563291878725067 ATDYHVRVY 9 Unmodified _ATDYHVRVY_ 0 0 0 FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;FNDC3B|p.A357V|1|0.31|ENSG00000075420|chr3:172307371-172307371|C/T|missense_variant FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2187805175781 3 375.189212 1122.54581 0.074423 2.7923E-05 -0.40077 -0.00015037 -0.32635 -0.00012244 375.1890576827657 57.033 1.1912 53.843 53.336 54.528 -3.1895 125 33 5 0 0 0 0.26627 1 10656 10656 53.404 27.383 1 130540000 4331 1517 2572 2575 4688 4688 -0.010563291878725067 ATDYHVRVY 9 Unmodified _ATDYHVRVY_ 0 0 0 FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;FNDC3B|p.A357V|1|0.31|ENSG00000075420|chr3:172307371-172307371|C/T|missense_variant FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2196960449219 3 375.189212 1122.54581 -0.64404 -0.00024164 0.37708 0.00014148 -0.26696 -0.00010016 375.1893622075448 57.078 1.824 53.902 53.334 55.158 -3.1761 192 51 7 0 0 0 0.58077 2 10844 10844;10879 14.405 10.818 1 121740000 4332 1517 2572 2575 4689;4690 4689 -0.010563291878725067 ATEAEFSPED 10 Unmodified _ATEAEFSPED_ 0 0 0 nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;ENSG00000155629|ENST00000339364|PIK3AP1;PIK3AP1|p.P531Cfs*18|1|0.25|ENSG00000155629|chr10:96626785-96626786|GG/-|frameshift_variant;PIK3AP1|p.S562Kfs*34|1|0.4|ENSG00000155629|chr10:96623522-96623523|-/T|frameshift_variant nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7816162109375 2 548.227476 1094.4404 0.31796 0.00017432 -0.52196 -0.00028615 -0.20399 -0.00011183 548.2269307207746 117.1 0.4953 117.1 116.88 117.38 0 19 13 2 0 0 0 0.70987 1 23051 23051 18.146 4.2403 1 2617100 4333 5052 2573 2576 4691 4691 -0.1030433489479492 ATEAEFSPED 10 Unmodified _ATEAEFSPED_ 0 0 0 nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;ENSG00000155629|ENST00000339364|PIK3AP1;PIK3AP1|p.P531Cfs*18|1|0.25|ENSG00000155629|chr10:96626785-96626786|GG/-|frameshift_variant;PIK3AP1|p.S562Kfs*34|1|0.4|ENSG00000155629|chr10:96623522-96623523|-/T|frameshift_variant nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7910766601562 2 548.227476 1094.4404 0.56752 0.00031113 -1.4746 -0.00080844 -0.90712 -0.00049731 548.226509935923 122.04 0.65482 117.35 117.09 117.75 -4.6873 41 18 3 0 0 0 0.81109 1 23389 23389 5.2969 1.1074 1 4987100 4334 5052 2573 2576 4692 4692 -0.1030433489479492 ATEANGEINAP 11 Unmodified _ATEANGEINAP_ 0 0 0 REV__ENSG00000184144|ENST00000331830|CNTN2 REV__ENSG00000184144|ENST00000331830|CNTN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7698364257812 2 543.756735 1085.49892 0.012038 6.546E-06 0.82134 0.00044661 0.83338 0.00045315 543.7579498451908 46.772 0.70081 43.83 43.267 43.968 -2.9421 26 19 2 0 0 0 0.43921 1 8420 8420 26.268 2.2476 1 2470000 + 4335 18880 2574 2577 4693 4693 -0.04041233529665078 ATEAPGFRA 9 Unmodified _ATEAPGFRA_ 0 0 0 ENST00000397110.6_1_22:37576398-37578231:-|nuORF ENST00000397110.6_1_22:37576398-37578231:-|nuORF ENST00000397110.6_1_22:37576398-37578231:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5249938964844 2 460.235242 918.45593 0.26555 0.00012222 0.16664 7.6693E-05 0.43219 0.00019891 460.23519723364535 36.419 0.67403 36.419 36.177 36.851 0 33 18 3 0 0 0 0.55979 1 6733 6733 15.847 2.3393 1 1735700 4336 9457 2575 2578 4694 4694 -0.006559587964261482 ATEDTRLIY 9 Unmodified _ATEDTRLIY_ 0 0 0 nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2799072265625 2 541.279846 1080.54514 -0.022688 -1.228E-05 0.0085487 4.6272E-06 -0.014139 -7.6532E-06 541.2797855744088 68.483 0.96635 68.483 68.035 69.002 0 74 26 4 0 0 0 0.13708 1 13326 13326 46.021 2.2486 1 16095000 4337 5088 2576 2579 4695 4695 0.008088313724329055 ATEDTRLIY 9 Unmodified _ATEDTRLIY_ 0 0 0 nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2802734375 2 541.279846 1080.54514 0.073492 3.9779E-05 -0.038554 -2.0869E-05 0.034937 1.8911E-05 541.2798297701883 71.746 0.95147 68.497 67.994 68.945 -3.2492 67 26 4 0 0 0 0.13708 1 14045 14045 46.021 2.2486 1 13991000 4338 5088 2576 2579 4696 4696 0.008088313724329055 ATEDTRLIY 9 Unmodified _ATEDTRLIY_ 0 0 0 nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2804565429688 2 541.279846 1080.54514 0.35569 0.00019253 0.17428 9.4333E-05 0.52997 0.00028686 541.2798883192773 31.624 0.32188 29.597 29.372 29.694 -2.0264 11 8 2 0 0 0 0.60805 1 5481 5481 12.532 0.29089 1 553590 4339 5088 2576 2579 4697 4697 0.008088313724329055 ATEDTRLIY 9 Unmodified _ATEDTRLIY_ 0 0 0 nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2833251953125 2 541.279846 1080.54514 0.36233 0.00019612 -0.39819 -0.00021553 -0.035857 -1.9409E-05 541.2796892084851 72.032 0.92005 68.404 67.883 68.803 -3.6275 60 25 3 0 0 0 0.19311 2 13518 13518;13664 37.974 1.847 1 9650600 4340 5088 2576 2579 4698;4699 4698 0.008088313724329055 ATEDTRLIY 9 Unmodified _ATEDTRLIY_ 0 0 0 nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2791748046875 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 72.352 1 68.814 68.314 69.314 -3.5385 0 0 0 0.054963 1 13720 13720 49.933 1.5872 1 4341 5088 2576 2579 4700 4700 0.008088313724329055 ATEERLFH 8 Unmodified _ATEERLFH_ 0 0 0 CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant;nc|ENSG00000147434|Q15825-2|CHRNA6;ENSG00000147434|ENST00000276410|CHRNA6;ENST00000529467.1_1_8:42620195-42623609:-|nuORF;ENST00000530869.1_1_8:42614249-42623609:-|nuORF CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.0519714355469 3 334.838291 1001.49304 -0.1388 -4.6477E-05 0.41474 0.00013887 0.27594 9.2395E-05 334.8384040957465 48.888 0.45751 48.888 48.703 49.16 0 21 12 2 0 0 0 1.0265 1 9207 9207 1.6526 0 1 1113400 4342 552 2577 2580 4701 4701 -0.0076428725066080005 ATEERLFH 8 Unmodified _ATEERLFH_ 0 0 0 CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant;nc|ENSG00000147434|Q15825-2|CHRNA6;ENSG00000147434|ENST00000276410|CHRNA6;ENST00000529467.1_1_8:42620195-42623609:-|nuORF;ENST00000530869.1_1_8:42614249-42623609:-|nuORF CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 334.838291 1001.49304 -0.44336 -0.00014845 0.46999 0.00015737 0.026634 8.9181E-06 334.8384917049724 51.471 0.48288 48.588 48.348 48.831 -2.8824 -0.055294 5.798E-05 NaN 1.6526 22 13 3 NaN NaN NaN NaN 0 NaN NaN 0 790880 4343 552 2577 2580 -0.0076428725066080005 ATEERLFH 8 Unmodified _ATEERLFH_ 0 0 0 CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant;nc|ENSG00000147434|Q15825-2|CHRNA6;ENSG00000147434|ENST00000276410|CHRNA6;ENST00000529467.1_1_8:42620195-42623609:-|nuORF;ENST00000530869.1_1_8:42614249-42623609:-|nuORF CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 334.838291 1001.49304 0.047096 1.577E-05 0.019536 6.5415E-06 0.066633 2.2311E-05 334.838297087142 51.607 0.55481 48.562 48.368 48.923 -3.0453 -0.081599 -0.00039451 NaN 1.6526 24 15 3 NaN NaN NaN NaN 0 NaN NaN 0 925070 4344 552 2577 2580 -0.0076428725066080005 ATEERLFH 8 Unmodified _ATEERLFH_ 0 0 0 CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant;nc|ENSG00000147434|Q15825-2|CHRNA6;ENSG00000147434|ENST00000276410|CHRNA6;ENST00000529467.1_1_8:42620195-42623609:-|nuORF;ENST00000530869.1_1_8:42614249-42623609:-|nuORF CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 334.838291 1001.49304 -0.74536 -0.00024958 0.80293 0.00026885 0.057569 1.9276E-05 335.1728340604811 51.588 0.52654 48.536 48.343 48.87 -3.0517 -0.10743 0.00039242 NaN 1.6526 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1043900 4345 552 2577 2580 -0.0076428725066080005 ATELKNNSY 9 Unmodified _ATELKNNSY_ 0 0 0 ENSG00000100353|ENST00000216190|EIF3D;nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENST00000462641.1_1_22:36907036-36908721:-|nuORF ENSG00000100353|ENST00000216190|EIF3D ENSG00000100353|ENST00000216190|EIF3D MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2617797851562 2 520.256371 1038.49819 0.2394 0.00012455 -0.10953 -5.6982E-05 0.12987 6.7568E-05 520.2562678039903 23.918 0.78312 23.918 23.623 24.406 0 84 22 6 0 0 0 0.45059 1 4097 4097 30.637 18.105 1 82477000 4346 1962 2578 2581 4702 4702 -0.019520281786981286 ATELKNNSY 9 Unmodified _ATELKNNSY_ 0 0 0 ENSG00000100353|ENST00000216190|EIF3D;nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENST00000462641.1_1_22:36907036-36908721:-|nuORF ENSG00000100353|ENST00000216190|EIF3D ENSG00000100353|ENST00000216190|EIF3D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2610473632812 2 520.256371 1038.49819 -0.055487 -2.8867E-05 -0.040739 -2.1195E-05 -0.096226 -5.0062E-05 520.2563495681437 25.607 0.72844 23.754 23.499 24.227 -1.8534 75 20 5 0 0 0 0.58077 1 4199 4199 20.454 11.106 1 53404000 4347 1962 2578 2581 4703 4703 -0.019520281786981286 ATELTHEDY 9 Unmodified _ATELTHEDY_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2814331054688 2 539.738011 1077.46147 0.37314 0.0002014 -0.074803 -4.0374E-05 0.29834 0.00016102 539.7378734604226 38.476 0.88421 38.476 38.14 39.024 0 67 24 4 0 0 0 0.13708 1 7109 7109 46.021 26.764 1 19876000 4348 5677 2579 2582 4704 4704 -0.0741632479528107 ATELTHEDY 9 Unmodified _ATELTHEDY_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.267333984375 2 539.738011 1077.46147 -0.013338 -7.1992E-06 0.37169 0.00020062 0.35835 0.00019342 539.7381307755686 41.169 0.66002 38.535 38.221 38.881 -2.6348 56 18 4 0 0 0 0.13708 2 7706 7703;7706 46.021 26.764 1 21324000 4349 5677 2579 2582 4705;4706 4706 -0.0741632479528107 ATELTHEDY 9 Unmodified _ATELTHEDY_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2598266601562 2 539.738011 1077.46147 0.086598 4.674E-05 0.20134 0.00010867 0.28794 0.00015541 539.7380651718823 41.068 0.83778 38.528 38.208 39.045 -2.5398 68 23 5 0 0 0 0.13708 3 7361 7361;7384;7391 46.021 46.021 1 23636000 4350 5677 2579 2582 4707;4708;4709 4707 -0.0741632479528107 ATELTHEDY 9 Unmodified _ATELTHEDY_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2677001953125 2 539.738011 1077.46147 0.14586 7.8724E-05 0.21631 0.00011675 0.36217 0.00019548 539.7380209029686 41.013 0.95013 38.523 38.006 38.957 -2.4896 74 26 4 0 0 0 0.13708 2 7376 7328;7376 46.021 26.764 1 17974000 4351 5677 2579 2582 4710;4711 4711 -0.0741632479528107 ATEPAVSVTS 10 Unmodified _ATEPAVSVTS_ 0 0 0 REV__ENST00000576995.1_1_17:79079719-79080836:+|nuORF REV__ENST00000576995.1_1_17:79079719-79080836:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25213623046875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 67.491 1 64.164 63.664 64.664 -3.3268 0 0 0 0.18733 1 12726 12726 30.637 1.555 1 + 4352 23211 2580 2583 4712 4712 -0.005428329272717747 ATEPGLFSV 9 Unmodified _ATEPGLFSV_ 0 0 0 PCDHB7|p.G616S|1|0.57|ENSG00000113212|chr5:141174681-141174681|G/A|missense_variant PCDHB7|p.G616S|1|0.57|ENSG00000113212|chr5:141174681-141174681|G/A|missense_variant PCDHB7|p.G616S|1|0.57|ENSG00000113212|chr5:141174681-141174681|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22662353515625 2 460.739825 919.465098 -0.018768 -8.6469E-06 -0.12798 -5.8965E-05 -0.14675 -6.7612E-05 460.7396922221441 63.03 0.64549 60.033 59.738 60.384 -2.9975 43 18 3 0 0 0 0.74655 1 12209 12209 6.7232 1.9672 1 5914500 4353 12758 2581 2584 4713 4713 0.002143897692462815 ATEQPPRHREH 11 Unmodified _ATEQPPRHREH_ 0 0 0 ENSG00000175467|ENST00000312397|SART1;ENST00000528573.1_1_11:65729206-65732008:+|nuORF;ENST00000532333.5_1_11:65729206-65731694:+|nuORF ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.752685546875 3 453.228841 1356.66469 0.25877 0.00011728 -1.0614 -0.00048107 -0.80266 -0.00036379 453.2283183748553 22.457 0.87549 22.457 21.981 22.857 0 57 24 4 0 0 0 0.75092 1 3810 3810 8.2864 2.0946 1 4417900 4354 6412 2582 2585 4714 4714 0.0006283776972395572 ATEREFGNY 9 Unmodified _ATEREFGNY_ 0 0 0 nc|ENSG00000077800|O75344-3|FKBP6;nc|ENSG00000077800|O75344-2|FKBP6;ENSG00000077800|ENST00000252037|FKBP6 nc|ENSG00000077800|O75344-3|FKBP6 nc|ENSG00000077800|O75344-3|FKBP6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7848510742188 2 543.74617 1085.47779 NaN NaN NaN NaN NaN NaN NaN 32.749 1 32.749 32.249 33.249 0 0 0 0 0.22193 1 5959 5959 17.113 0.1706 1 4355 1563 2583 2586 4715 4715 -0.061531988385240766 ATERGGVPE 9 Unmodified _ATERGGVPE_ 0 0 0 ENST00000313778.9_2_3:49058434-49058683:-|nuORF ENST00000313778.9_2_3:49058434-49058683:-|nuORF ENST00000313778.9_2_3:49058434-49058683:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23089599609375 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 61.211 1 57.841 57.341 58.341 -3.3694 0 0 0 0.22519 1 11410 11410 16.149 0.30192 1 4356 8666 2584 2587 4716 4716 -0.014885665216525013 ATERTAEPS 9 Unmodified _ATERTAEPS_ 0 0 0 REV__ENST00000576955.5_1_17:7140770-7142712:-|nuORF REV__ENST00000576955.5_1_17:7140770-7142712:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23516845703125 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 25.532 1 23.883 23.383 24.383 -1.6482 0 0 0 0.12123 1 4480 4480 34.402 3.7652 1 + 4357 23210 2585 2588 4717 4717 -0.030568877298492225 ATERVEYVRH 10 Unmodified _ATERVEYVRH_ 0 0 0 REV__ENSG00000116198|ENST00000378230|CEP104 REV__ENSG00000116198|ENST00000378230|CEP104 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7662963867188 2 630.328193 1258.64183 NaN NaN NaN NaN NaN NaN NaN 31.619 1 29.593 29.093 30.093 -2.0264 0 0 0 0.22588 1 5463 5463 9.3831 0.63772 1 + 4358 13372 2586 2589 4718 4718 0.022858186522398682 ATETGKLQAY 10 Unmodified _ATETGKLQAY_ 0 0 0 NOS1|p.S771L|1|0.3|ENSG00000089250|chr12:117260520-117260520|G/A|missense_variant NOS1|p.S771L|1|0.3|ENSG00000089250|chr12:117260520-117260520|G/A|missense_variant NOS1|p.S771L|1|0.3|ENSG00000089250|chr12:117260520-117260520|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2781982421875 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 41.093 1 38.603 38.103 39.103 -2.4896 0 0 0 0.22526 1 7368 7368 21.747 2.3076 1 4359 12700 2587 2590 4719 4719 0.008088313724329055 ATETSHTEGI 10 Unmodified _ATETSHTEGI_ 0 0 0 R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant;nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 349.5039978027344 3 349.164732 1044.47237 -0.79658 -0.00027814 -1.0354 -0.00036153 -1.832 -0.00063967 349.1643355200231 79.574 2.3004 75.898 75.096 77.396 -3.676 81 65 2 0 0 0 0.42762 1 15200 15200 10.151 8.4083 1 6133500 4360 5683 2588 2591 4720 4720 -0.048089224209888926 ATETSHTEGI 10 Unmodified _ATETSHTEGI_ 0 0 0 R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant;nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 349.164732 1044.47237 -0.24149 -8.4319E-05 -1.2918 -0.00045106 -1.5333 -0.00053538 349.1642202831137 79.503 2.3883 75.993 75.483 77.872 -3.5102 0.042923 0.00014725 NaN 10.151 95 67 3 NaN NaN NaN NaN 0 NaN NaN 0 8927900 4361 5683 2588 2591 -0.048089224209888926 ATETSHTEGI 10 Unmodified _ATETSHTEGI_ 0 0 0 R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant;nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 349.164732 1044.47237 -0.055494 -1.9377E-05 -1.9272 -0.0006729 -1.9827 -0.00069228 349.1639914438184 79.764 1.5007 75.959 75.301 76.801 -3.8048 0.009191 -0.00051829 NaN 10.151 64 42 3 NaN NaN NaN NaN 0 NaN NaN 0 6011700 4362 5683 2588 2591 -0.048089224209888926 ATETSHTEGI 10 Unmodified _ATETSHTEGI_ 0 0 0 R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant;nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 349.164732 1044.47237 -0.79658 -0.00027814 -1.0354 -0.00036153 -1.832 -0.00063967 349.1643355200231 79.574 2.3004 75.898 75.096 77.396 -3.676 -0.052114 0.00041583 NaN 10.151 81 65 2 NaN NaN NaN NaN 0 NaN NaN 0 6133500 4363 5683 2588 2591 -0.048089224209888926 ATETYRAAY 9 Unmodified _ATETYRAAY_ 0 0 0 REV__ENSG00000154493|ENST00000488181|C10orf90 REV__ENSG00000154493|ENST00000488181|C10orf90 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.685791015625 2 523.251089 1044.48762 0.31975 0.00016731 -0.35812 -0.00018739 -0.038375 -2.008E-05 523.2509060326873 36.487 1.5483 34.15 33.743 35.292 -2.3375 108 43 4 0 0 0 0.74655 1 6618 6618 10.824 0 1 51685000 + 4364 17184 2589 2592 4721 4721 -0.032840108331583906 ATEYLQLMVY 10 Unmodified _ATEYLQLMVY_ 0 0 0 nc|ENSG00000120659|O14788-2|TNFSF11;nc|ENSG00000120659|O14788-3|TNFSF11;ENSG00000120659|ENST00000398795|TNFSF11 nc|ENSG00000120659|O14788-2|TNFSF11 nc|ENSG00000120659|O14788-2|TNFSF11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.1497802734375 3 410.874014 1229.60021 -0.077174 -3.1709E-05 0.34216 0.00014058 0.26498 0.00010887 410.87413545114435 15.145 0.17367 15.145 15.087 15.261 0 8 4 2 0 0 0 0.91149 1 2284 2284 0.69767 0.69767 1 608300 4365 3144 2590 2593 4722 4722 -0.005404981513038365 ATFEDILEEI 10 Unmodified _ATFEDILEEI_ 0 0 0 ENST00000371482.5_2_9:140343848-140347544:-|nuORF;nc|ENSG00000165802|Q6X4W1-4|NSMF;nc|ENSG00000165802|Q6X4W1-6|NSMF;nc|ENSG00000165802|Q6X4W1-3|NSMF;nc|ENSG00000165802|Q6X4W1-2|NSMF;ENSG00000165802|ENST00000371475|NSMF ENST00000371482.5_2_9:140343848-140347544:-|nuORF ENST00000371482.5_2_9:140343848-140347544:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2701416015625 2 590.292619 1178.57069 NaN NaN NaN NaN NaN NaN NaN 131.59 1 126.8 126.3 127.3 -4.799 0 0 0 0.22588 1 25334 25334 10.824 0 1 4366 5663 2591 2594 4723 4723 -0.011457388957978765 ATFGREATK 9 Unmodified _ATFGREATK_ 0 0 0 nc|ENSG00000288701|Q5JSZ5|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2711181640625 2 490.761623 979.508694 -0.20676 -0.00010147 0.21963 0.00010779 0.01287 6.3163E-06 490.76175568641065 16.938 0.52177 15.722 15.495 16.016 -1.2159 35 14 4 0 0 0 0.47479 1 2696 2696 37.974 0 1 9338900 4367 12657 2592 2595 4724 4724 0.01811999266374187 ATFGSIDVF 9 Unmodified _ATFGSIDVF_ 0 0 0 REV__ADCY10|p.W654*|1|0.29|ENSG00000143199|chr1:167856362-167856374|CTCCATAAATCTC/-|frameshift_variant REV__ADCY10|p.W654*|1|0.29|ENSG00000143199|chr1:167856362-167856374|CTCCATAAATCTC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7401428222656 2 478.739825 955.465098 NaN NaN NaN NaN NaN NaN NaN 106.8 1 102.39 101.89 102.89 -4.4121 0 0 0 0.22621 1 20490 20490 15.847 3.3156 1 + 4368 12954 2593 2596 4725 4725 -0.01441610230756396 ATFSHLAEC 9 Unmodified _ATFSHLAEC_ 0 0 0 REV__LRBA-SH3D19|1|fusion REV__LRBA-SH3D19|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2630920410156 2 489.72111 977.427666 0.10314 5.0512E-05 -0.49487 -0.00024235 -0.39173 -0.00019184 489.721048294448 71.951 0.91798 71.951 71.453 72.371 0 82 25 4 0 0 0 0.74655 1 14017 14017 21.747 10.106 1 57707000 + 4369 15171 2594 2597 4726 4726 -0.0619502476802154 ATFSQAPSQPQ 11 Unmodified _ATFSQAPSQPQ_ 0 0 0 POU6F1|p.Q244Rfs*3|1|0.4|ENSG00000184271|chr12:51190423-51190423|G/-|frameshift_variant;ENSG00000184271|ENST00000333640|POU6F1 POU6F1|p.Q244Rfs*3|1|0.4|ENSG00000184271|chr12:51190423-51190423|G/-|frameshift_variant POU6F1|p.Q244Rfs*3|1|0.4|ENSG00000184271|chr12:51190423-51190423|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7083740234375 3 387.85601 1160.5462 -0.046055 -1.7863E-05 -0.089219 -3.4604E-05 -0.13527 -5.2467E-05 387.85588391972914 25.169 0.30689 25.169 24.913 25.22 0 13 8 2 0 0 0 0.96117 1 4324 4324 4.1166 0 1 585020 4370 6901 2595 2598 4727 4727 -0.027649542586686948 ATFVSFYR 8 Unmodified _ATFVSFYR_ 0 0 0 REV__ENST00000477200.1_1_2:209167000-209167102:+|nuORF REV__ENST00000477200.1_1_2:209167000-209167102:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.0314636230469 3 330.839632 989.497067 -0.37679 -0.00012466 -0.68123 -0.00022538 -1.058 -0.00035003 330.83941454618014 18.398 0.45344 17.126 16.93 17.384 -1.2722 23 12 3 0 0 0 1.0158 1 2804 2804 3.2813 1.6287 1 5747200 + 4371 22114 2596 2599 4728 4728 0.0018980224305096272 ATFVSFYR 8 Unmodified _ATFVSFYR_ 0 0 0 REV__ENST00000477200.1_1_2:209167000-209167102:+|nuORF REV__ENST00000477200.1_1_2:209167000-209167102:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 330.839632 989.497067 -0.50301 -0.00016642 -0.37092 -0.00012272 -0.87393 -0.00028913 330.8395043311006 17.293 0.52424 17.293 17.1 17.625 0 0.10774 0.00022961 NaN 3.2813 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 20743000 + 4372 22114 2596 2599 0.0018980224305096272 ATFVSFYR 8 Unmodified _ATFVSFYR_ 0 0 0 REV__ENST00000477200.1_1_2:209167000-209167102:+|nuORF REV__ENST00000477200.1_1_2:209167000-209167102:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 330.839632 989.497067 -0.32616 -0.00010791 -0.73109 -0.00024187 -1.0572 -0.00034978 330.8393702428376 18.449 0.4186 17.138 16.967 17.386 -1.3109 -0.047619 -0.00012786 NaN 3.2813 30 11 4 NaN NaN NaN NaN 0 NaN NaN 0 8864600 + 4373 22114 2596 2599 0.0018980224305096272 ATFWVKVA 8 Unmodified _ATFWVKVA_ 0 0 0 nc|ENSG00000184716|A6NH21-2|SERINC4;ENST00000448553.5_1_15:44087200-44089477:-|nuORF;nc|ENSG00000184716|A6NH21|SERINC4 nc|ENSG00000184716|A6NH21-2|SERINC4 nc|ENSG00000184716|A6NH21-2|SERINC4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.2615966796875 2 461.263271 920.511988 NaN NaN NaN NaN NaN NaN NaN 51.241 1 51.241 50.741 51.741 0 0 0 0 0.22934 1 9717 9717 1.4551 1.0755 1 4374 9959 2597 2600 4729 4729 0.048552941110415304 ATGATLPPPP 10 Unmodified _ATGATLPPPP_ 0 0 0 ENST00000476670.2_3_6:29599279-29600558:-|nuORF;ENST00000485508.5_1_6:29599279-29600271:-|nuORF ENST00000476670.2_3_6:29599279-29600558:-|nuORF ENST00000476670.2_3_6:29599279-29600558:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.54388427734375 2 461.255643 920.496732 0.073514 3.3909E-05 0.16653 7.6814E-05 0.24005 0.00011072 461.25560355605296 61.884 0.6684 58.514 58.253 58.922 -3.3694 34 18 2 0 0 0 0.69553 1 11605 11605 11.64 0 1 1335400 4375 10293 2598 2601 4730 4730 0.03330382523188291 ATGDDGNQAA 10 Unmodified _ATGDDGNQAA_ 0 0 0 REV__ENSG00000170209|ENST00000303941|ANKK1 REV__ENSG00000170209|ENST00000303941|ANKK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22955322265625 2 460.191228 918.367903 0.36026 0.00016579 -1.7171 -0.00079021 -1.3569 -0.00062442 460.1903246522688 30.598 0.35056 28.482 28.295 28.645 -2.1167 10 9 2 0 0 0 0.871 1 5545 5545 3.2813 0 1 307490 + 4376 18146 2599 2602 4731 4731 -0.09454624177703863 ATGDTTISY 9 Unmodified _ATGDTTISY_ 0 0 0 OR6C65|p.L102*|1|0.26|ENSG00000205328|chr12:55400826-55400826|T/-|frameshift_variant;OR6C65|p.I306Yfs*4|1|0.17|ENSG00000205328|chr12:55401438-55401438|A/-|frameshift_variant;ENSG00000205328|ENST00000379665|OR6C65 OR6C65|p.L102*|1|0.26|ENSG00000205328|chr12:55400826-55400826|T/-|frameshift_variant OR6C65|p.L102*|1|0.26|ENSG00000205328|chr12:55400826-55400826|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24017333984375 2 464.716547 927.418542 0.13272 6.1678E-05 0.12475 5.7972E-05 0.25747 0.00011965 464.71652242846335 34.458 0.67762 34.458 34.178 34.856 0 43 19 3 0 0 0 0.54076 1 6341 6341 34.102 5.6156 1 2401000 4377 7641 2600 2603 4732 4732 -0.0480709485270836 ATGDTTISY 9 Unmodified _ATGDTTISY_ 0 0 0 OR6C65|p.L102*|1|0.26|ENSG00000205328|chr12:55400826-55400826|T/-|frameshift_variant;OR6C65|p.I306Yfs*4|1|0.17|ENSG00000205328|chr12:55401438-55401438|A/-|frameshift_variant;ENSG00000205328|ENST00000379665|OR6C65 OR6C65|p.L102*|1|0.26|ENSG00000205328|chr12:55400826-55400826|T/-|frameshift_variant OR6C65|p.L102*|1|0.26|ENSG00000205328|chr12:55400826-55400826|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23992919921875 2 464.716547 927.418542 -0.467 -0.00021702 0.71821 0.00033376 0.25121 0.00011674 464.716759118566 36.916 0.79633 34.448 34.188 34.985 -2.4688 63 22 4 0 0 0 0.49001 1 6865 6865 28.487 6.7402 1 4152000 4378 7641 2600 2603 4733 4733 -0.0480709485270836 ATGENLPRV 9 Unmodified _ATGENLPRV_ 0 0 0 API5|p.T405Qfs*11|1|0.27|ENSG00000166181|chr11:43330046-43330046|A/-|frameshift_variant;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5 API5|p.T405Qfs*11|1|0.27|ENSG00000166181|chr11:43330046-43330046|A/-|frameshift_variant API5|p.T405Qfs*11|1|0.27|ENSG00000166181|chr11:43330046-43330046|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.739990234375 2 478.761623 955.508694 0.074658 3.5744E-05 -0.28005 -0.00013407 -0.20539 -9.8331E-05 478.7615855293734 62.289 0.91095 59.327 58.864 59.775 -2.9614 56 25 3 0 0 0 0.012534 2 12054 11943;12054 99.755 39.681 1 3669900 4379 183 2601 2604 4734;4735 4735 0.029159992663721823 ATGENLPRV 9 Unmodified _ATGENLPRV_ 0 0 0 API5|p.T405Qfs*11|1|0.27|ENSG00000166181|chr11:43330046-43330046|A/-|frameshift_variant;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5 API5|p.T405Qfs*11|1|0.27|ENSG00000166181|chr11:43330046-43330046|A/-|frameshift_variant API5|p.T405Qfs*11|1|0.27|ENSG00000166181|chr11:43330046-43330046|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7333679199219 2 478.761623 955.508694 0.14489 6.9367E-05 -0.071401 -3.4184E-05 0.073487 3.5183E-05 478.7615878866405 62.773 1.096 59.357 58.661 59.757 -3.4158 54 30 3 0 0 0 0.00016281 1 11723 11723 122.18 55.723 1 2758100 4380 183 2601 2604 4736 4736 0.029159992663721823 ATGENLPRV 9 Unmodified _ATGENLPRV_ 0 0 0 API5|p.T405Qfs*11|1|0.27|ENSG00000166181|chr11:43330046-43330046|A/-|frameshift_variant;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5 API5|p.T405Qfs*11|1|0.27|ENSG00000166181|chr11:43330046-43330046|A/-|frameshift_variant API5|p.T405Qfs*11|1|0.27|ENSG00000166181|chr11:43330046-43330046|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.727783203125 2 478.761623 955.508694 0.2209 0.00010576 -0.17261 -8.2639E-05 0.048285 2.3117E-05 478.76148243814606 62.643 0.90068 59.404 58.826 59.727 -3.2395 57 25 3 0 0 0 0.5685 1 11659 11659 15.248 1.3424 1 2425800 4381 183 2601 2604 4737 4737 0.029159992663721823 ATGGGRAAKQY 11 Unmodified _ATGGGRAAKQY_ 0 0 0 REV__RBM47|p.A336T|1|0.26|ENSG00000163694|chr4:40437888-40437888|C/T|missense_variant REV__RBM47|p.A336T|1|0.26|ENSG00000163694|chr4:40437888-40437888|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2143249511719 3 360.524595 1078.55196 0.079159 2.8539E-05 -0.50904 -0.00018352 -0.42988 -0.00015498 360.5246361792263 25.344 0.62261 23.81 23.574 24.196 -1.5342 26 17 2 0 0 0 0.96104 1 4170 4170 2.4348 0 1 490470 + 4382 24552 2602 2605 4738 4738 0.01582189043665494 ATGGLQEPP 9 Unmodified _ATGGLQEPP_ 0 0 0 ENST00000253193.8_1_19:33698273-33698456:+|nuORF ENST00000253193.8_1_19:33698273-33698456:+|nuORF ENST00000253193.8_1_19:33698273-33698456:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.8928527832031 2 435.2218 868.429047 -0.1686 -7.3378E-05 0.19108 8.3163E-05 0.022484 9.7854E-06 435.2218430359776 59.662 1.4935 56.729 56.017 57.51 -2.9333 67 42 2 0 0 0 0.84208 1 11393 11393 11.64 2.2929 1 2320700 4383 8235 2603 2606 4739 4739 -0.01043067407624676 ATGGLQEPP 9 Unmodified _ATGGLQEPP_ 0 0 0 ENST00000253193.8_1_19:33698273-33698456:+|nuORF ENST00000253193.8_1_19:33698273-33698456:+|nuORF ENST00000253193.8_1_19:33698273-33698456:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 435.2218 868.429047 -0.053105 -2.3112E-05 -0.14829 -6.454E-05 -0.2014 -8.7653E-05 435.22171219446545 60.142 1.3405 56.919 56.15 57.49 -3.2237 0.16586 -0.00010508 NaN 11.64 62 37 2 NaN NaN NaN NaN 0 NaN NaN 0 1316100 4384 8235 2603 2606 -0.01043067407624676 ATGHCSCA 8 Unmodified _ATGHCSCA_ 0 0 0 ENSG00000162591|ENST00000356575|MEGF6;nc|ENSG00000162591|O75095-2|MEGF6;MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant;MEGF6|p.A1440Hfs*78|2|0.41|ENSG00000162591|chr1:3493840-3493840|C/-|frameshift_variant;MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant ENSG00000162591|ENST00000356575|MEGF6;MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant ENSG00000162591|ENST00000356575|MEGF6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.1982421875 2 375.138898 748.263244 NaN NaN NaN NaN NaN NaN NaN 64.675 1 61.392 60.892 61.892 -3.2832 0 0 0 0.23749 1 12145 12145 0.0082765 0 1 4385 5345;12126 2604 2607 4740 4740 -0.12095740459631088 ATGHNLSVY 9 Unmodified _ATGHNLSVY_ 0 0 0 nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B;FAM135B|p.A704Cfs*7|1|0.18|ENSG00000147724|chr8:138152365-138152366|-/A|frameshift_variant;nc|ENSG00000147724|Q49AJ0-3|FAM135B;nc|ENSG00000147724|Q49AJ0-4|FAM135B nc|ENSG00000147724|Q49AJ0-2|FAM135B nc|ENSG00000147724|Q49AJ0-2|FAM135B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2543029785156 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 118.31 1 113.69 113.19 114.19 -4.6106 0 0 0 0.23508 1 22700 22700 11.64 2.2929 1 4386 4716 2605 2608 4741 4741 -0.015319761420073519 ATGHPDSMF 9 Unmodified _ATGHPDSMF_ 0 0 0 REV__ENST00000426643.1_1_6:32359408-32361305:+|nuORF REV__ENST00000426643.1_1_6:32359408-32361305:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.767822265625 2 481.70546 961.396366 NaN NaN NaN NaN NaN NaN NaN 93.658 1 93.658 93.158 94.158 0 0 0 0 0.23508 1 18330 18330 12.532 2.3482 1 + 4387 21568 2606 2609 4742 4742 -0.08587597802113578 ATGHSHGH 8 Unmodified _ATGHSHGH_ 0 0 0 ENST00000394790.2_1_10:75532144-75533060:+|nuORF;FUT11|p.R107Pfs*169|1|0.38|ENSG00000196968|chr10:73772649-73772650|-/C|frameshift_variant;FUT11|p.E35Gfs*241|1|0.17|ENSG00000196968|chr10:73772432-73772433|-/G|frameshift_variant ENST00000394790.2_1_10:75532144-75533060:+|nuORF ENST00000394790.2_1_10:75532144-75533060:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 402.16363525390625 2 402.180801 802.347048 NaN NaN NaN NaN NaN NaN NaN 65.113 1 61.83 61.33 62.33 -3.2832 0 0 0 0.23749 1 12234 12234 0.0082765 0 1 4388 9419 2607 2610 4743 4743 -0.06203124976048002 ATGHTPPLAEA 11 Unmodified _ATGHTPPLAEA_ 0 0 0 nc|ENSG00000151718|Q6AWC2-5|WWC2;nc|ENSG00000151718|Q6AWC2-3|WWC2;nc|ENSG00000151718|Q6AWC2-2|WWC2;nc|ENSG00000151718|Q6AWC2-4|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-6|WWC2 nc|ENSG00000151718|Q6AWC2-5|WWC2 nc|ENSG00000151718|Q6AWC2-5|WWC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2741088867188 2 532.772188 1063.52982 -0.07103 -3.7843E-05 0.20115 0.00010716 0.13012 6.9322E-05 532.7722664251648 90.544 1.4778 90.544 89.913 91.391 0 115 41 4 0 0 0 0.43824 1 17585 17585 29.841 12.398 1 67623000 4389 4885 2608 2611 4744 4744 0.0005996457523451681 ATGKGFLR 8 Unmodified _ATGKGFLR_ 0 0 0 nc|ENSG00000064763|Q96K12-2|FAR2;ENSG00000064763|ENST00000536681|FAR2;FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant;FAR2|p.K443Nfs*4|2|0.35|ENSG00000064763|chr12:29332666-29332666|A/-|frameshift_variant nc|ENSG00000064763|Q96K12-2|FAR2 nc|ENSG00000064763|Q96K12-2|FAR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2478942871094 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 28.976 1 28.976 28.476 29.476 0 0 0 0 0.23749 1 5163 5163 0.0082765 0 1 4390 1343 2609 2612 4745 4745 0.05653239308458069 ATGKRTTTA 9 Unmodified _ATGKRTTTA_ 0 0 0 nc|ENSG00000106012|Q6IPM2-2|IQCE;nc|ENSG00000106012|Q6IPM2-3|IQCE;nc|ENSG00000106012|Q6IPM2-4|IQCE;ENSG00000106012|ENST00000402050|IQCE nc|ENSG00000106012|Q6IPM2-2|IQCE nc|ENSG00000106012|Q6IPM2-2|IQCE MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7536926269531 2 453.753798 905.493044 0.306 0.00013885 -1.441 -0.00065387 -1.135 -0.00051502 453.75319942118546 27.315 0.33829 27.315 27.115 27.454 0 15 9 2 0 0 0 0.75112 2 4795 4795;4843 3.9444 0 1 651890 4391 2358 2610 2613 4746;4747 4746 0.03651712749319813 ATGKRTTTA 9 Unmodified _ATGKRTTTA_ 0 0 0 nc|ENSG00000106012|Q6IPM2-2|IQCE;nc|ENSG00000106012|Q6IPM2-3|IQCE;nc|ENSG00000106012|Q6IPM2-4|IQCE;ENSG00000106012|ENST00000402050|IQCE nc|ENSG00000106012|Q6IPM2-2|IQCE nc|ENSG00000106012|Q6IPM2-2|IQCE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7533264160156 2 453.753798 905.493044 0.27955 0.00012685 -1.3338 -0.00060521 -1.0542 -0.00047836 453.75328950455247 29.276 0.49458 27.383 27.123 27.617 -1.8928 18 13 2 0 0 0 0.63318 1 4990 4990 0.40827 0 1 557410 4392 2358 2610 2613 4748 4748 0.03651712749319813 ATGLGHFGY 9 Unmodified _ATGLGHFGY_ 0 0 0 ENSG00000146700|ENST00000275560|SSC4D ENSG00000146700|ENST00000275560|SSC4D ENSG00000146700|ENST00000275560|SSC4D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.52655029296875 2 461.72451 921.434466 -0.15341 -7.0831E-05 0.46826 0.00021621 0.31485 0.00014538 461.72466652830724 87.648 2.8141 83.856 82.626 85.44 -3.7926 177 78 3 0 0 0 0.8204 1 17455 17455 13.508 5.5977 1 6163900 4393 4666 2611 2614 4749 4749 -0.029393438251418047 ATGLGTSSY 9 Unmodified _ATGLGTSSY_ 0 0 0 ENST00000332211.10_2_10:76980682-76982077:+|nuORF ENST00000332211.10_2_10:76980682-76982077:+|nuORF ENST00000332211.10_2_10:76980682-76982077:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 428.1332092285156 2 428.705983 855.397412 -0.30698 -0.0001316 0.2947 0.00012634 -0.012275 -5.2623E-06 428.70606953941234 51.132 0.98172 48.08 47.643 48.625 -3.0517 43 27 2 0 0 0 0.87258 1 9465 9465 4.3292 1.44 1 1643200 4394 8784 2612 2615 4750 4750 -0.036070601615620035 ATGLGTSSY 9 Unmodified _ATGLGTSSY_ 0 0 0 ENST00000332211.10_2_10:76980682-76982077:+|nuORF ENST00000332211.10_2_10:76980682-76982077:+|nuORF ENST00000332211.10_2_10:76980682-76982077:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 428.705983 855.397412 0.44329 0.00019004 -0.28809 -0.00012351 0.1552 6.6534E-05 428.7057620805292 47.983 0.98288 47.983 47.505 48.488 0 -0.037025 -0.00026589 NaN 4.3292 37 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1968800 4395 8784 2612 2615 -0.036070601615620035 ATGLGTSSY 9 Unmodified _ATGLGTSSY_ 0 0 0 ENST00000332211.10_2_10:76980682-76982077:+|nuORF ENST00000332211.10_2_10:76980682-76982077:+|nuORF ENST00000332211.10_2_10:76980682-76982077:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 428.705983 855.397412 -0.29771 -0.00012763 0.094503 4.0514E-05 -0.20321 -8.7115E-05 428.7059489651746 50.843 0.95805 47.961 47.535 48.493 -2.8824 -0.058791 6.2149E-05 NaN 4.3292 45 26 2 NaN NaN NaN NaN 0 NaN NaN 0 3401200 4396 8784 2612 2615 -0.036070601615620035 ATGLGTSSY 9 Unmodified _ATGLGTSSY_ 0 0 0 ENST00000332211.10_2_10:76980682-76982077:+|nuORF ENST00000332211.10_2_10:76980682-76982077:+|nuORF ENST00000332211.10_2_10:76980682-76982077:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 428.705983 855.397412 0.0082522 3.5378E-06 -0.23369 -0.00010018 -0.22544 -9.6646E-05 428.7058323472052 51.1 1.1151 48.055 47.565 48.68 -3.0453 0.035313 -0.00021925 NaN 4.3292 51 31 2 NaN NaN NaN NaN 0 NaN NaN 0 2605100 4397 8784 2612 2615 -0.036070601615620035 ATGLILRRCEL 11 Unmodified _ATGLILRRCEL_ 0 0 0 ENSG00000181790|ENST00000517894|ADGRB1;ENST00000518820.1_1_8:143561046-143604069:+|nuORF ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7669067382812 2 622.860815 1243.70708 NaN NaN NaN NaN NaN NaN NaN 67.118 1 64.009 63.509 64.509 -3.1086 0 0 0 0.224 1 13015 13015 13.042 3.6593 1 4398 6744 2613 2616 4751 4751 0.09497096853715448 ATGLLKPK 8 Unmodified _ATGLLKPK_ 0 0 0 ISM1|p.D157Tfs*119|1|0.12|ENSG00000101230|chr20:13279719-13279719|C/-|frameshift_variant;ISM1|p.R194Gfs*82|2|0.21|ENSG00000101230|chr20:13279828-13279828|C/-|frameshift_variant ISM1|p.D157Tfs*119|1|0.12|ENSG00000101230|chr20:13279719-13279719|C/-|frameshift_variant ISM1|p.D157Tfs*119|1|0.12|ENSG00000101230|chr20:13279719-13279719|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.2694396972656 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 45.351 1 42.561 42.061 43.061 -2.79 0 0 0 0.21486 1 8539 8539 9.3474 1.4373 1 4399 11957 2614 2617 4752 4752 0.10743580628081872 ATGLSATELG 10 Unmodified _ATGLSATELG_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2425231933594 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 27.365 1 25.61 25.11 26.11 -1.7552 0 0 0 0.22588 1 4576 4576 8.7454 0.15213 1 4400 7651 2615 2618 4753 4753 0.0033318441827532297 ATGNEFTGDEY 11 Unmodified _ATGNEFTGDEY_ 0 0 0 REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.280517578125 2 602.243657 1202.47276 1.0185 0.00061336 4.3107 0.0025961 5.3291 0.0032094 602.2455476258746 82.238 0.38994 78.681 78.582 78.972 -3.557 11 10 2 0 0 0 0.75285 1 16074 16074 8.1555 0.8663 1 1071900 + 4401 25051 2616 2619 4754 4754 -0.12037547491809164 ATGNEFTGDEY 11 Unmodified _ATGNEFTGDEY_ 0 0 0 REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3013916015625 2 602.243657 1202.47276 NaN NaN NaN NaN NaN NaN NaN 28.461 1 26.706 26.206 27.206 -1.7552 0 0 0 0.23087 1 4804 4804 7.609 0 1 + 4402 25051 2616 2619 4755 4755 -0.12037547491809164 ATGPELEAK 9 Unmodified _ATGPELEAK_ 0 0 0 PALM3|p.V281Wfs*12|1|0.19|ENSG00000187867|chr19:14054786-14054786|C/-|frameshift_variant;PALM3|p.E291Rfs*2|1|0.41|ENSG00000187867|chr19:14054756-14054756|C/-|frameshift_variant;nc|ENSG00000187867|A6NDB9|PALM3;ENSG00000187867|ENST00000669674|PALM3 PALM3|p.V281Wfs*12|1|0.19|ENSG00000187867|chr19:14054786-14054786|C/-|frameshift_variant PALM3|p.V281Wfs*12|1|0.19|ENSG00000187867|chr19:14054786-14054786|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2489929199219 2 458.242732 914.470912 0.39995 0.00018327 -0.16307 -7.4724E-05 0.23688 0.00010855 458.2425625848969 30.309 1.1888 28.192 27.494 28.683 -2.1167 121 33 5 0 0 0 0.61228 1 5493 5493 12.241 0.60036 1 65458000 4403 7134 2617 2620 4756 4756 0.010254882809022092 ATGRLCRAGG 10 Unmodified _ATGRLCRAGG_ 0 0 0 ENST00000595934.1_1_19:50360521-50360788:+|nuORF ENST00000595934.1_1_19:50360521-50360788:+|nuORF ENST00000595934.1_1_19:50360521-50360788:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2504577636719 2 481.253443 960.492332 NaN NaN NaN NaN NaN NaN NaN 54.951 1 54.951 54.451 55.451 0 0 0 0 0.22583 1 10480 10480 13.906 0.39817 1 4404 11663 2618 2621 4757 4757 0.010505948286322564 ATGRVAAE 8 Unmodified _ATGRVAAE_ 0 0 0 ENST00000540703.1_1_12:22671059-22672147:-|nuORF ENST00000540703.1_1_12:22671059-22672147:-|nuORF ENST00000540703.1_1_12:22671059-22672147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.72369384765625 2 387.70886 773.403166 NaN NaN NaN NaN NaN NaN NaN 23.552 1 21.999 21.499 22.499 -1.5532 0 0 0 0.21486 1 4069 4069 8.5933 3.3626 1 4405 11075 2619 2622 4758 4758 0.007400831407494479 ATGSPVPTILW 11 Unmodified _ATGSPVPTILW_ 0 0 0 ENST00000484514.1_1_3:78710132-78763649:-|nuORF;ROBO1|p.F755Lfs*28|2|0.21|ENSG00000169855|chr3:78661085-78661085|A/-|frameshift_variant;ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant;ROBO1|p.R1504Sfs*40|1|0.01|ENSG00000169855|chr3:78606968-78606969|-/TGAC|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1 ENST00000484514.1_1_3:78710132-78763649:-|nuORF ENST00000484514.1_1_3:78710132-78763649:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2142639160156 3 381.213246 1140.61791 NaN NaN NaN NaN NaN NaN NaN 45.215 1 42.425 41.925 42.925 -2.79 0 0 0 0.224 1 8511 8511 10.315 3.6918 1 4406 6011 2620 2623 4759 4759 0.053225851658453394 ATHAWKAR 8 Unmodified _ATHAWKAR_ 0 0 0 REV__SHROOM3|p.A1436T|1|0.17|ENSG00000138771|chr4:76754789-76754789|G/A|missense_variant REV__SHROOM3|p.A1436T|1|0.17|ENSG00000138771|chr4:76754789-76754789|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.3137512207031 3 314.175238 939.503883 0.00093118 2.9255E-07 -0.0090638 -2.8476E-06 -0.0081327 -2.5551E-06 314.1751777066957 20.378 0.45817 18.981 18.688 19.146 -1.3966 21 12 2 0 0 0 1.0267 1 3387 3387 0.35063 0 1 280370 + 4407 24616 2621 2624 4760 4760 0.031711599142681735 ATHAWKAR 8 Unmodified _ATHAWKAR_ 0 0 0 REV__SHROOM3|p.A1436T|1|0.17|ENSG00000138771|chr4:76754789-76754789|G/A|missense_variant REV__SHROOM3|p.A1436T|1|0.17|ENSG00000138771|chr4:76754789-76754789|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 314.175238 939.503883 -0.25343 -7.9622E-05 0.0057653 1.8113E-06 -0.24767 -7.7811E-05 314.1752504722091 20.248 0.59762 18.863 18.604 19.202 -1.3847 -0.059029 6.7563E-06 NaN 0.35063 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 448740 + 4408 24616 2621 2624 0.031711599142681735 ATHCNNEQ 8 Unmodified _ATHCNNEQ_ 0 0 0 REV__GPSM2|p.K514N|1|0.31|ENSG00000121957|chr1:108922518-108922518|G/T|missense_variant REV__GPSM2|p.K514N|1|0.31|ENSG00000121957|chr1:108922518-108922518|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 306.792724609375 3 306.124103 915.350479 -0.52768 -0.00016154 -0.038463 -1.1774E-05 -0.56614 -0.00017331 306.12403335567615 35.02 0.80896 32.626 32.318 33.127 -2.3938 45 22 3 0 0 0 8448 1 6468 6468 0.25148 0 1 2321900 + 4409 23588 2622 2625 4761 4761 -0.11058242984358913 ATHGNECCQ 9 Unmodified _ATHGNECCQ_ 0 0 0 REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|159|3|sense REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|159|3|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.779541015625 2 481.676376 961.3382 0.16274 7.8386E-05 -0.52557 -0.00025315 -0.36283 -0.00017477 481.67632659851046 40.422 0.46622 40.422 40.032 40.499 0 17 12 2 0 0 0 0.60575 1 7518 7518 0.12781 0 1 1076000 + 4410 23772 2623 2626 4762 4762 -0.14401602719044604 ATHLNLAKHF 10 Unmodified _ATHLNLAKHF_ 0 0 0 REV__CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant REV__CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3351440429688 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 72.629 1 69.09 68.59 69.59 -3.5385 0 0 0 0.22588 1 13771 13771 6.7232 1.9672 1 + 4411 13394 2624 2627 4763 4763 0.055439428370846144 ATHNFPCPH 9 Unmodified _ATHNFPCPH_ 0 0 0 ENST00000506637.2_1_4:81308203-81308479:-|nuORF;nc|ENSG00000131061|Q9BYN7-2|ZNF341;ENSG00000131061|ENST00000375200|ZNF341 ENST00000506637.2_1_4:81308203-81308479:-|nuORF ENST00000506637.2_1_4:81308203-81308479:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.0218505859375 3 341.820355 1022.43923 NaN NaN NaN NaN NaN NaN NaN 28.133 1 26.137 25.637 26.637 -1.9962 0 0 0 0.23508 1 4735 4735 2.7352 0 1 4412 3659 2625 2628 4764 4764 -0.07108782954037451 ATHPGSPGQPP 11 Unmodified _ATHPGSPGQPP_ 0 0 0 nc|ENSG00000131196|O95644-17|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1 nc|ENSG00000131196|O95644-17|NFATC1 nc|ENSG00000131196|O95644-17|NFATC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.255126953125 2 523.256705 1044.49886 NaN NaN NaN NaN NaN NaN NaN 25.567 1 25.567 25.067 26.067 0 0 0 0 0.22862 1 4443 4443 9.3831 2.0939 1 4413 3663 2626 2629 4765 4765 -0.021611887390008633 ATHRFQAM 8 Unmodified _ATHRFQAM_ 0 0 0 ENSG00000149742|ENST00000279178|SLC22A9 ENSG00000149742|ENST00000279178|SLC22A9 ENSG00000149742|ENST00000279178|SLC22A9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2373352050781 2 481.237261 960.45997 NaN NaN NaN NaN NaN NaN NaN 118.93 1 114.32 113.82 114.82 -4.6106 0 0 0 0.23664 1 22823 22823 3.5871 2.9602 1 4414 4808 2627 2630 4766 4766 -0.02184192574361532 ATHTKKEHLS 10 Unmodified _ATHTKKEHLS_ 0 0 0 REV__ENSG00000173988|ENST00000595396|LRRC63 REV__ENSG00000173988|ENST00000595396|LRRC63 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3121948242188 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 35.327 1 32.933 32.433 33.433 -2.3938 0 0 0 0.22559 1 6504 6504 17.113 7.7298 1 + 4415 18384 2628 2631 4767 4767 0.04019031249231375 ATIAQNIIN 9 Unmodified _ATIAQNIIN_ 0 0 0 REV__nc|ENSG829|Q9HDB9|ERVK-5_gag REV__nc|ENSG829|Q9HDB9|ERVK-5_gag MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7236022949219 2 479.271824 956.529095 -0.031854 -1.5267E-05 0.13684 6.5586E-05 0.10499 5.0319E-05 479.2717496635704 44.197 0.41553 41.431 41.113 41.529 -2.7661 15 11 2 0 0 0 0.82765 1 7967 7967 5.7319 0 1 374050 + 4416 24332 2629 2632 4768 4768 0.049091699261907706 ATIEPIIRKGY 11 Unmodified _ATIEPIIRKGY_ 0 0 0 REV__TOP2B|p.R1240K|1|0.38|ENSG00000077097|chr3:25612582-25612582|C/T|missense_variant REV__TOP2B|p.R1240K|1|0.38|ENSG00000077097|chr3:25612582-25612582|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7774047851562 2 630.869163 1259.72377 NaN NaN NaN NaN NaN NaN NaN 50.31 1 47.264 46.764 47.764 -3.0453 0 0 0 0.23264 1 9214 9214 6.2058 0.9089 1 + 4417 24831 2630 2633 4769 4769 0.10429921011336774 ATIEYSRR 8 Unmodified _ATIEYSRR_ 0 0 0 ENST00000513085.1_1_5:95728707-95748688:-|nuORF;nc|ENSG00000175426|P29120-2|PCSK1;PCSK1|p.Y729Ifs*21|2|0.31|ENSG00000175426|chr5:96393078-96393078|A/-|frameshift_variant;ENSG00000175426|ENST00000311106|PCSK1 ENST00000513085.1_1_5:95728707-95748688:-|nuORF ENST00000513085.1_1_5:95728707-95748688:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.0104675292969 3 332.513807 994.519593 0.046181 1.5356E-05 -0.49054 -0.00016311 -0.44436 -0.00014775 332.51357908387695 24.884 0.47816 23.35 23.06 23.538 -1.5342 30 13 3 0 0 0 1.0267 1 4038 4038 1.4819 0 1 2402100 4418 6409 2631 2634 4770 4770 0.02211401640670374 ATIHDERCHY 10 Unmodified _ATIHDERCHY_ 0 0 0 REV__nc|ENSG00000159625|Q8IY82-2|DRC7 REV__nc|ENSG00000159625|Q8IY82-2|DRC7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7799072265625 2 622.777479 1243.5404 NaN NaN NaN NaN NaN NaN NaN 44.686 1 44.686 44.186 45.186 0 0 0 0 0.22588 1 8389 8389 7.2892 2.3922 1 + 4419 17378 2632 2635 4771 4771 -0.07162376041969765 ATIIFFSY 8 Unmodified _ATIIFFSY_ 0 0 0 tr|U7SNK3|U7SNK3_FUSNUMagnesiumtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01793PE=4SV=1 tr|U7SNK3|U7SNK3_FUSNUMagnesiumtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01793PE=4SV=1 tr|U7SNK3|U7SNK3_FUSNUMagnesiumtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01793PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2532653808594 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 83.162 1 83.162 82.662 83.662 0 0 0 0 0.21323 1 16214 16214 14.582 3.7578 1 4420 26030 2633 2636 4772 4772 0.013841681542885453 ATIIFFSY 8 Unmodified _ATIIFFSY_ 0 0 0 tr|U7SNK3|U7SNK3_FUSNUMagnesiumtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01793PE=4SV=1 tr|U7SNK3|U7SNK3_FUSNUMagnesiumtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01793PE=4SV=1 tr|U7SNK3|U7SNK3_FUSNUMagnesiumtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01793PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2536315917969 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 87.317 1 83.321 82.821 83.821 -3.9953 0 0 0 0.20568 1 16628 16628 20.871 3.9289 1 4421 26030 2633 2636 4773 4773 0.013841681542885453 ATIKKAPV 8 Unmodified _ATIKKAPV_ 0 0 0 REV__ENSG00000188846|ENST00000396203|RPL14 REV__ENSG00000188846|ENST00000396203|RPL14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.2696228027344 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 20.022 1 18.625 18.125 19.125 -1.3966 0 0 0 0.21486 1 3327 3327 4.3292 0 1 + 4422 19175 2634 2637 4774 4774 0.10743580628081872 ATIKKAPV 8 Unmodified _ATIKKAPV_ 0 0 0 REV__ENSG00000188846|ENST00000396203|RPL14 REV__ENSG00000188846|ENST00000396203|RPL14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.2686462402344 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 50.05 1 47.169 46.669 47.669 -2.8811 0 0 0 0.21486 1 9491 9491 4.3292 0 1 + 4423 19175 2634 2637 4775 4775 0.10743580628081872 ATIKKAPV 8 Unmodified _ATIKKAPV_ 0 0 0 REV__ENSG00000188846|ENST00000396203|RPL14 REV__ENSG00000188846|ENST00000396203|RPL14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.27685546875 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 50.91 1 48.028 47.528 48.528 -2.8824 0 0 0 0.21486 1 9665 9665 4.3292 0 1 + 4424 19175 2634 2637 4776 4776 0.10743580628081872 ATIKQTHGNL 10 Unmodified _ATIKQTHGNL_ 0 0 0 REV__WDR41|p.N368*|1|0.3|ENSG00000164253|chr5:77436386-77436387|-/A|frameshift_variant REV__WDR41|p.N368*|1|0.3|ENSG00000164253|chr5:77436386-77436387|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2650146484375 2 541.80128 1081.58801 0.67275 0.00036449 -0.55421 -0.00030027 0.11853 6.4221E-05 541.8007666021182 46.93 0.49753 46.93 46.695 47.193 0 20 13 2 0 0 0 0.83271 1 8799 8799 16.149 6.766 1 994210 + 4425 17664 2635 2638 4777 4777 0.050476462205324424 ATIKVITNS 9 Unmodified _ATIKVITNS_ 0 0 0 ENST00000417449.6_1_11:107431564-107436390:-|nuORF ENST00000417449.6_1_11:107431564-107436390:-|nuORF ENST00000417449.6_1_11:107431564-107436390:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1607360839844 3 316.190442 945.549496 0.35304 0.00011163 -0.52381 -0.00016563 -0.17077 -5.3997E-05 316.1902376720386 29.67 0.62724 27.777 27.473 28.101 -1.8928 43 17 3 0 0 0 0.88313 1 5002 5002 0.18151 0 1 5608800 4426 9628 2636 2639 4778 4778 0.07454340585991304 ATIKVITNS 9 Unmodified _ATIKVITNS_ 0 0 0 ENST00000417449.6_1_11:107431564-107436390:-|nuORF ENST00000417449.6_1_11:107431564-107436390:-|nuORF ENST00000417449.6_1_11:107431564-107436390:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 316.190442 945.549496 0.29677 9.3835E-05 -0.51174 -0.00016181 -0.21498 -6.7974E-05 316.1902215732377 29.756 0.62564 27.639 27.35 27.975 -2.1167 -0.073875 -0.00014621 NaN 0.18151 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 5421500 4427 9628 2636 2639 0.07454340585991304 ATILVGKKI 9 Unmodified _ATILVGKKI_ 0 0 0 REV__RNF133|p.F278Sfs*43|1|0.17|ENSG00000188050|chr7:122698086-122698086|A/-|frameshift_variant REV__RNF133|p.F278Sfs*43|1|0.17|ENSG00000188050|chr7:122698086-122698086|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.4671325683594 3 314.883061 941.627353 NaN NaN NaN NaN NaN NaN NaN 57.657 1 57.657 57.157 58.157 0 0 0 0 0.19636 1 11027 11027 0.029283 0.021006 1 + 4428 19128 2637 2640 4779 4779 0.15420398242054034 ATIMVKRK 8 Unmodified _ATIMVKRK_ 0 0 0 ENST00000478701.1_1_2:210636760-210659540:+|nuORF ENST00000478701.1_1_2:210636760-210659540:+|nuORF ENST00000478701.1_1_2:210636760-210659540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.2010192871094 3 316.200395 945.579357 NaN NaN NaN NaN NaN NaN NaN 52.025 1 48.973 48.473 49.473 -3.0517 0 0 0 0.21486 1 9595 9595 0.40072 0.40072 1 4429 10326 2638 2641 4780 4780 0.10439001050349361 ATIPGTVSLA 10 Unmodified _ATIPGTVSLA_ 0 0 0 REV__ENST00000537091.2_1_17:17772601-17875627:-|nuORF REV__ENST00000537091.2_1_17:17772601-17875627:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25701904296875 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 56.963 1 53.787 53.287 54.287 -3.1761 0 0 0 0.22583 1 10610 10610 13.906 1.6654 1 + 4430 18483 2639 2642 4781 4781 0.05582651694658125 ATIPIVLLLKA 11 Unmodified _ATIPIVLLLKA_ 0 0 0 ENSG00000184698|ENST00000642046|OR51M1 ENSG00000184698|ENST00000642046|OR51M1 ENSG00000184698|ENST00000642046|OR51M1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3167724609375 2 576.391742 1150.76893 0.10818 6.2353E-05 2.6216 0.0015111 2.7298 0.0015734 576.391038181748 148.12 0.17171 143.41 143.34 143.51 -4.7095 5 3 2 0 0 0 0.89055 1 29427 29427 0.00056442 0 1 1218200 4431 6929 2640 2643 4782 4782 0.19957771544500247 ATISSVNID 9 Unmodified _ATISSVNID_ 0 0 0 nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;NEK4|p.E836*|1|0.21|ENSG00000114904|chr3:52711797-52711798|-/A|frameshift_variant;ENSG00000114904|ENST00000233027|NEK4 nc|ENSG00000114904|P51957-3|NEK4 nc|ENSG00000114904|P51957-3|NEK4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2391357421875 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 65.228 1 65.228 64.728 65.728 0 0 0 0 0.19162 1 12572 12572 0.37959 0 1 4432 2816 2641 2644 4783 4783 0.0033318441828669165 ATITLLNLY 9 Unmodified _ATITLLNLY_ 0 0 0 ENSG00000198763|ENST00000361453|MT-ND2 ENSG00000198763|ENST00000361453|MT-ND2 ENSG00000198763|ENST00000361453|MT-ND2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 512.822998046875 2 511.30005 1020.58555 0.63868 0.00032656 -0.64543 -0.00033001 -0.0067494 -3.451E-06 511.2996333237014 108.21 1.01 104.08 103.42 104.43 -4.135 94 28 4 0 0 0 0.41081 1 20818 20818 2.6312 1.4164 1 28911000 4433 7489 2642 2645 4784 4784 0.07607797762841528 ATITLLNLY 9 Unmodified _ATITLLNLY_ 0 0 0 ENSG00000198763|ENST00000361453|MT-ND2 ENSG00000198763|ENST00000361453|MT-ND2 ENSG00000198763|ENST00000361453|MT-ND2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 511.30005 1020.58555 0.52192 0.00026686 -0.7843 -0.00040101 -0.26238 -0.00013415 511.29957123565833 104.36 1.075 104.36 103.58 104.65 0 0.14044 -5.8798E-05 NaN 2.6312 91 30 4 NaN NaN NaN NaN 0 NaN NaN 0 26041000 4434 7489 2642 2645 0.07607797762841528 ATIVHPVGHL 10 Unmodified _ATIVHPVGHL_ 0 0 0 REV__nc|ENSG00000188452|Q49MI3-9|CERKL REV__nc|ENSG00000188452|Q49MI3-9|CERKL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2646484375 2 522.303458 1042.59236 NaN NaN NaN NaN NaN NaN NaN 147.03 1 142.03 141.53 142.53 -5 0 0 0 2.8426 1 28458 28458 1.9275 1.0826 1 + 4435 24217 2643 2646 4785 4785 0.07277155434076121 ATKAMCIG 8 Unmodified _ATKAMCIG_ 0 0 0 nc|ENSG00000153531|Q8NDY3-2|ADPRHL1;nc|ENSG00000153531|Q8NDY3|ADPRHL1;ENSG00000153531|ENST00000612156|ADPRHL1 nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 397.8516540527344 2 397.698592 793.382631 -0.25311 -0.00010066 -1.1991 -0.00047689 -1.4522 -0.00057755 397.6980550378143 44.027 0.79611 41.237 40.982 41.778 -2.79 35 22 2 0 0 0 0.76308 1 8349 8349 3.5871 0.94402 1 581810 4436 4972 2644 2647 4786 4786 -0.022325468349208677 ATKAMCIG 8 Unmodified _ATKAMCIG_ 0 0 0 nc|ENSG00000153531|Q8NDY3-2|ADPRHL1;nc|ENSG00000153531|Q8NDY3|ADPRHL1;ENSG00000153531|ENST00000612156|ADPRHL1 nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 397.698592 793.382631 0.15334 6.0983E-05 -1.4587 -0.0005801 -1.3053 -0.00051912 397.6979945204664 41.539 0.88612 41.539 41.197 42.083 0 0.19766 -7.8141E-05 NaN 3.5871 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 851190 4437 4972 2644 2647 -0.022325468349208677 ATKAMCIG 8 Unmodified _ATKAMCIG_ 0 0 0 nc|ENSG00000153531|Q8NDY3-2|ADPRHL1;nc|ENSG00000153531|Q8NDY3|ADPRHL1;ENSG00000153531|ENST00000612156|ADPRHL1 nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 397.698592 793.382631 -0.048527 -1.9299E-05 -1.4469 -0.00057541 -1.4954 -0.00059471 397.69802790325485 44.014 0.96976 41.248 41.042 42.012 -2.7661 -0.093355 -6.876E-05 NaN 3.5871 37 27 2 NaN NaN NaN NaN 0 NaN NaN 0 819360 4438 4972 2644 2647 -0.022325468349208677 ATKEAEFRERL 11 Unmodified _ATKEAEFRERL_ 0 0 0 ENSG00000169515|ENST00000307522|CCDC8 ENSG00000169515|ENST00000307522|CCDC8 ENSG00000169515|ENST00000307522|CCDC8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.1136169433594 3 450.577247 1348.70991 -0.10589 -4.7713E-05 -0.28655 -0.00012911 -0.39244 -0.00017682 450.57721293761097 18.747 0.30533 17.436 17.282 17.587 -1.3109 13 8 2 0 0 0 0.96179 1 3064 3064 2.084 0 1 835900 4439 5986 2645 2648 4787 4787 0.0495064351223391 ATKERLSVY 9 Unmodified _ATKERLSVY_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.264404296875 2 533.798206 1065.58186 0.27335 0.00014591 -0.17906 -9.5581E-05 0.09429 5.0332E-05 533.7981099905777 51.032 1.0346 51.032 50.13 51.165 0 48 29 3 0 0 0 0.79204 1 9543 9543 11.64 4.9171 1 2133200 4440 6567 2646 2649 4788 4788 0.051691279890064834 ATKFKTFI 8 Unmodified _ATKFKTFI_ 0 0 0 REV__ENST00000381346.8_1_14:68144270-68144630:-|nuORF REV__ENST00000381346.8_1_14:68144270-68144630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7225646972656 2 478.284203 954.553853 NaN NaN NaN NaN NaN NaN NaN 34.174 1 31.958 31.458 32.458 -2.2158 0 0 0 0.21486 1 5978 5978 10.183 1.5901 1 + 4441 21167 2647 2650 4789 4789 0.07475849799561729 ATKGVFEY 8 Unmodified _ATKGVFEY_ 0 0 0 REV__ENST00000497497.1_1_10:119013719-119036774:+|nuORF REV__ENST00000497497.1_1_10:119013719-119036774:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23870849609375 2 457.734543 913.454533 0.195 8.9259E-05 0.58532 0.00026792 0.78032 0.00035718 457.73450131811455 72.115 0.97751 72.115 71.598 72.575 0 54 27 3 0 0 0 0.64227 1 14053 14053 19.439 2.4967 1 4222200 + 4442 17790 2648 2651 4790 4790 -0.005655928851979297 ATKHLNWPV 9 Unmodified _ATKHLNWPV_ 0 0 0 ENST00000521175.1_1_8:6479201-6500303:+|nuORF ENST00000521175.1_1_8:6479201-6500303:+|nuORF ENST00000521175.1_1_8:6479201-6500303:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2833862304688 2 533.295633 1064.57671 NaN NaN NaN NaN NaN NaN NaN 124.37 1 119.6 119.1 120.1 -4.7681 0 0 0 0.23508 1 23884 23884 7.9102 0.62092 1 4443 10840 2649 2652 4791 4791 0.04700868917052503 ATKHRRTH 8 Unmodified _ATKHRRTH_ 0 0 0 ZNF696|p.A225T|1|0.64|ENSG00000185730|chr8:143296348-143296348|G/A|missense_variant ZNF696|p.A225T|1|0.64|ENSG00000185730|chr8:143296348-143296348|G/A|missense_variant ZNF696|p.A225T|1|0.64|ENSG00000185730|chr8:143296348-143296348|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.19390869140625 3 336.193291 1005.55804 NaN NaN NaN NaN NaN NaN NaN 57.025 1 57.025 56.525 57.525 0 0 0 0 0.21486 1 10897 10897 1.6526 0.45928 1 4444 26634 2650 2653 4792 4792 0.0554875206584029 ATKKGACA 8 Unmodified _ATKKGACA_ 0 0 0 REV__nc|ENSG00000101868|P09884|POLA1 REV__nc|ENSG00000101868|P09884|POLA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20428466796875 2 375.202356 748.390159 NaN NaN NaN NaN NaN NaN NaN 37.272 1 37.272 36.772 37.772 0 0 0 0 0.21486 1 6888 6888 2.5775 1.7838 1 + 4445 14803 2651 2654 4793 4793 0.005899287570173328 ATKLLGEVVHL 11 Unmodified _ATKLLGEVVHL_ 0 0 0 REV__DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant REV__DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2752685546875 2 590.358431 1178.70231 NaN NaN NaN NaN NaN NaN NaN 123.3 1 118.57 118.07 119.07 -4.731 0 0 0 0.2321 1 23686 23686 6.6304 0.89852 1 + 4446 13716 2652 2655 4794 4794 0.12010535982631154 ATKLTYPQ 8 Unmodified _ATKLTYPQ_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.54205322265625 2 461.255643 920.496732 0.059465 2.7428E-05 0.44967 0.00020741 0.50913 0.00023484 461.25590979027004 57.673 0.56556 54.468 54.111 54.677 -3.2052 21 15 2 0 0 0 1.0147 1 10784 10784 2.3027 0.24298 1 684780 4447 1406 2653 2656 4795 4795 0.03330382523188291 ATKLTYPQ 8 Unmodified _ATKLTYPQ_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.255643 920.496732 0.14733 6.7956E-05 0.034743 1.6025E-05 0.18207 8.3982E-05 461.2556720270876 54.394 0.52672 54.394 54.103 54.63 0 -0.036903 -0.00019199 NaN 2.3027 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 761710 4448 1406 2653 2656 0.03330382523188291 ATKPELLFY 9 Unmodified _ATKPELLFY_ 0 0 0 ENST00000472971.1_1_1:35476328-35477547:-|nuORF;ENST00000493328.5_1_1:35455862-35480681:-|nuORF;ZMYM6|p.I637Yfs*14|1|0.36|ENSG00000163867|chr1:35005177-35005177|T/-|frameshift_variant;nc|ENSG00000163867|O95789-1|ZMYM6;ZMYM6|p.L686Ifs*41|1|0.03|ENSG00000163867|chr1:34992324-34992325|-/GAAAGGAAAAGAAAAT|frameshift_variant;ZMYM6|p.N724Mfs*15|1|0.42|ENSG00000163867|chr1:34988911-34988911|T/-|frameshift_variant;ZMYM6|p.F804Lfs*6|1|0.38|ENSG00000163867|chr1:34988670-34988670|A/-|frameshift_variant;ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant;ENSG00000163867|ENST00000357182|ZMYM6 ENST00000472971.1_1_1:35476328-35477547:-|nuORF ENST00000472971.1_1_1:35476328-35477547:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2604370117188 2 541.30005 1080.58555 NaN NaN NaN NaN NaN NaN NaN 111.27 1 106.85 106.35 107.35 -4.4231 0 0 0 0.23508 1 21921 21921 8.5933 0.68312 1 4449 5473 2654 2657 4796 4796 0.04847797762840855 ATKRLIGR 8 Unmodified _ATKRLIGR_ 0 0 0 ENST00000506477.5_1_5:137906647-137911007:-|nuORF;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENSG00000113013|ENST00000297185|HSPA9 ENST00000506477.5_1_5:137906647-137911007:-|nuORF ENST00000506477.5_1_5:137906647-137911007:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23870849609375 2 457.798343 913.582134 NaN NaN NaN NaN NaN NaN NaN 92.491 1 88.682 88.182 89.182 -3.8083 0 0 0 0.21486 1 17723 17723 5.2307 0 1 4450 2722 2655 2658 4797 4797 0.12188592499512652 ATKSWPVE 8 Unmodified _ATKSWPVE_ 0 0 0 ENST00000523232.1_1_8:137528301-137531442:+|nuORF ENST00000523232.1_1_8:137528301-137531442:+|nuORF ENST00000523232.1_1_8:137528301-137531442:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2404479980469 2 459.239993 916.465432 -0.20609 -9.4645E-05 0.15544 7.1384E-05 -0.050652 -2.3262E-05 459.24001135076344 49.613 1.1545 46.732 46.063 47.218 -2.8811 99 32 5 0 0 0 0.70613 1 9318 9318 13.508 1.8676 1 41386000 4451 10869 2656 2659 4798 4798 0.0038580948910293955 ATKSWPVE 8 Unmodified _ATKSWPVE_ 0 0 0 ENST00000523232.1_1_8:137528301-137531442:+|nuORF ENST00000523232.1_1_8:137528301-137531442:+|nuORF ENST00000523232.1_1_8:137528301-137531442:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.239501953125 2 459.239993 916.465432 -0.019933 -9.1543E-06 -0.080415 -3.693E-05 -0.10035 -4.6084E-05 459.2399221355482 49.715 1.1352 46.716 46.067 47.202 -2.999 124 32 5 0 0 0 0.70613 2 9010 9010;9021 13.508 4.9146 1 34974000 4452 10869 2656 2659 4799;4800 4799 0.0038580948910293955 ATKSWPVE 8 Unmodified _ATKSWPVE_ 0 0 0 ENST00000523232.1_1_8:137528301-137531442:+|nuORF ENST00000523232.1_1_8:137528301-137531442:+|nuORF ENST00000523232.1_1_8:137528301-137531442:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24884033203125 2 459.239993 916.465432 -0.078113 -3.5873E-05 0.069587 3.1957E-05 -0.0085263 -3.9156E-06 459.23996413987317 49.711 1.2417 46.704 46.035 47.277 -3.0068 108 35 4 0 0 0 0.70613 1 9031 9031 13.508 4.1604 1 29745000 4453 10869 2656 2659 4801 4801 0.0038580948910293955 ATKVDGIY 8 Unmodified _ATKVDGIY_ 0 0 0 tr|U7SFQ8|U7SFQ8_FUSNUUridylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrHPE=3SV=1 tr|U7SFQ8|U7SFQ8_FUSNUUridylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrHPE=3SV=1 tr|U7SFQ8|U7SFQ8_FUSNUUridylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrHPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 433.8887023925781 2 433.734543 865.454533 -0.14396 -6.2438E-05 0.36265 0.00015729 0.2187 9.4856E-05 433.73454602364865 41.248 0.67372 38.759 38.422 39.096 -2.4896 44 18 4 0 0 0 0.99494 1 7343 7343 2.0598 1.3694 1 5023400 4454 25886 2657 2660 4802 4802 0.016424071148207986 ATLCAYVCL 9 Unmodified _ATLCAYVCL_ 0 0 0 REV__ENSG00000158683|ENST00000289672|PKD1L1 REV__ENSG00000158683|ENST00000289672|PKD1L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73193359375 2 478.732632 955.45071 NaN NaN NaN NaN NaN NaN NaN 94.896 1 90.705 90.205 91.205 -4.1911 0 0 0 0.18525 1 18109 18109 1.6919 0 1 + 4455 17342 2658 2661 4803 4803 -0.028797219749094438 ATLECPIIF 9 Unmodified _ATLECPIIF_ 0 0 0 ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.2174987792969 3 336.180778 1005.5205 NaN NaN NaN NaN NaN NaN NaN 79.805 1 79.805 79.305 80.305 0 0 0 0 0.23508 1 15531 15531 5.2969 1.3525 1 4456 7889 2659 2662 4804 4804 0.01796479965355502 ATLFEQVTDYL 11 Unmodified _ATLFEQVTDYL_ 0 0 0 REV__UCP1|p.I130Mfs*8|1|0.27|ENSG00000109424|chr4:140563454-140563454|A/-|frameshift_variant REV__UCP1|p.I130Mfs*8|1|0.27|ENSG00000109424|chr4:140563454-140563454|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 433.8880310058594 3 433.887088 1298.63943 NaN NaN NaN NaN NaN NaN NaN 135.85 1 135.85 135.35 136.35 0 0 0 0 0.23698 1 26914 26914 2.6312 0 1 + 4457 15161 2660 2663 4805 4805 0.0020592540392954106 ATLHEYLAK 9 Unmodified _ATLHEYLAK_ 0 0 0 REV__ENSG00000138095|ENST00000260665|LRPPRC REV__ENSG00000138095|ENST00000260665|LRPPRC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6964721679688 2 523.287474 1044.5604 -0.14675 -7.6791E-05 2.9898 0.0015645 2.843 0.0014877 523.7909543995597 96.77 0.24606 92.672 92.457 92.703 -4.0978 9 6 2 0 0 0 0.49001 1 18936 18936 36.044 5.8194 1 848580 + 4458 16437 2661 2664 4806 4806 0.03989742960266085 ATLHEYLAK 9 Unmodified _ATLHEYLAK_ 0 0 0 REV__ENSG00000138095|ENST00000260665|LRPPRC REV__ENSG00000138095|ENST00000260665|LRPPRC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.287474 1044.5604 -0.45675 -0.00023901 0.21704 0.00011358 -0.23971 -0.00012544 523.2851234577546 96.982 0.17698 92.747 92.641 92.818 -4.2348 0.037449 -0.0025973 NaN 34.102 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 470910 + 4459 16437 2661 2664 0.03989742960266085 ATLHGPVARY 10 Unmodified _ATLHGPVARY_ 0 0 0 ENST00000330912.2_X:152722046-152722684:-|nuORF ENST00000330912.2_X:152722046-152722684:-|nuORF ENST00000330912.2_X:152722046-152722684:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7908325195312 2 542.79854 1083.58253 0.22053 0.0001197 0.06793 3.6872E-05 0.28846 0.00015658 542.7984655793332 66.162 0.86112 63.115 62.611 63.472 -3.047 53 24 3 0 0 0 0.664 1 12710 12710 14.838 0.25658 1 6417100 4460 8773 2662 2665 4807 4807 0.04407967428710435 ATLHLIIRHM 10 Unmodified _ATLHLIIRHM_ 0 0 0 KDM2A|p.R1057H|1|0.41|ENSG00000173120|chr11:67254281-67254281|G/A|missense_variant KDM2A|p.R1057H|1|0.41|ENSG00000173120|chr11:67254281-67254281|G/A|missense_variant KDM2A|p.R1057H|1|0.41|ENSG00000173120|chr11:67254281-67254281|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2938842773438 2 602.852793 1203.69103 0.18616 0.00011223 -2.0401 -0.0012299 -1.854 -0.0011177 603.3536071451709 58.917 0.42712 55.711 55.434 55.861 -3.2052 13 11 2 0 0 0 0.90091 1 10974 10974 10.074 0.6908 1 735140 4461 11989 2663 2666 4808 4808 0.09733435407497382 ATLHLIIRHM 10 Unmodified _ATLHLIIRHM_ 0 0 0 KDM2A|p.R1057H|1|0.41|ENSG00000173120|chr11:67254281-67254281|G/A|missense_variant KDM2A|p.R1057H|1|0.41|ENSG00000173120|chr11:67254281-67254281|G/A|missense_variant KDM2A|p.R1057H|1|0.41|ENSG00000173120|chr11:67254281-67254281|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 602.852793 1203.69103 0.93022 0.00056079 -4.6351 -0.0027943 -3.7049 -0.0022335 602.8498180370551 58.575 0.37692 55.665 55.407 55.784 -2.9105 -0.010577 -0.00086122 NaN 10.074 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 732690 4462 11989 2663 2666 0.09733435407497382 ATLHLIIRHM 10 Unmodified _ATLHLIIRHM_ 0 0 0 KDM2A|p.R1057H|1|0.41|ENSG00000173120|chr11:67254281-67254281|G/A|missense_variant KDM2A|p.R1057H|1|0.41|ENSG00000173120|chr11:67254281-67254281|G/A|missense_variant KDM2A|p.R1057H|1|0.41|ENSG00000173120|chr11:67254281-67254281|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 602.852793 1203.69103 0.42673 0.00025726 -4.3462 -0.0026201 -3.9195 -0.0023629 602.8502110002349 58.902 0.24606 55.65 55.523 55.769 -3.2517 -0.025448 -0.00051293 NaN 10.074 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 709460 4463 11989 2663 2666 0.09733435407497382 ATLIRSRLVCL 11 Unmodified _ATLIRSRLVCL_ 0 0 0 ENST00000488533.5_1_3:119421909-119425810:+|nuORF ENST00000488533.5_1_3:119421909-119425810:+|nuORF ENST00000488533.5_1_3:119421909-119425810:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7700805664062 2 622.879007 1243.74346 NaN NaN NaN NaN NaN NaN NaN 143.07 1 138.41 137.91 138.91 -4.656 0 0 0 0.23087 1 28287 28287 7.609 1.8771 1 4464 10487 2664 2667 4809 4809 0.13133973750450423 ATLITSTT 8 Unmodified _ATLITSTT_ 0 0 0 ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000144136|ENST00000272542|SLC20A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 404.1282043457031 2 404.226551 806.438549 NaN NaN NaN NaN NaN NaN NaN 75.786 1 75.786 75.286 76.286 0 0 0 0 0.21486 1 14724 14724 9.3474 0.75416 1 4465 4544 2665 2668 4810 4810 0.02758700877893716 ATLKYKGIH 9 Unmodified _ATLKYKGIH_ 0 0 0 ENSG00000163116|ENST00000295268|STPG2 ENSG00000163116|ENST00000295268|STPG2 ENSG00000163116|ENST00000295268|STPG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.20672607421875 3 344.206315 1029.59712 NaN NaN NaN NaN NaN NaN NaN 68.582 1 65.191 64.691 65.691 -3.3903 0 0 0 0.23508 1 12950 12950 2.7352 1.0826 1 4466 5402 2666 2669 4811 4811 0.08350039576839663 ATLLSAISP 9 Unmodified _ATLLSAISP_ 0 0 0 REV__NELFA|p.I241Sfs*14|1|0.45|ENSG00000185049|chr4:1986317-1986317|G/-|frameshift_variant REV__NELFA|p.I241Sfs*14|1|0.45|ENSG00000185049|chr4:1986317-1986317|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21533203125 2 436.758018 871.501483 0.1291 5.6387E-05 -0.32122 -0.0001403 -0.19212 -8.391E-05 436.75791349754803 104.42 0.48621 100.07 99.762 100.25 -4.346 14 13 2 0 0 0 0.54076 1 19986 19986 34.102 9.4286 1 919450 + 4467 18936 2667 2670 4812 4812 0.060592666659431416 ATLLSVTG 8 Unmodified _ATLLSVTG_ 0 0 0 REV__tr|U7STU6|U7STU6_FUSNUMalonatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01193PE=3SV=1 REV__tr|U7STU6|U7STU6_FUSNUMalonatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01193PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2232666015625 2 381.223811 760.433069 NaN NaN NaN NaN NaN NaN NaN 42.98 1 42.98 42.48 43.48 0 0 0 0 0.21486 1 8046 8046 5.2307 0 1 + 4468 25123 2668 2671 4813 4813 0.04327022086113175 ATLLVWIVI 9 Unmodified _ATLLVWIVI_ 0 0 0 ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.247802734375 3 343.223194 1026.64775 NaN NaN NaN NaN NaN NaN NaN 62.6 1 59.361 58.861 59.861 -3.2395 0 0 0 0.23508 1 11736 11736 1.0715 0 1 4469 275 2669 2672 4814 4814 0.13549568901839848 ATLNNMRVY 9 Unmodified _ATLNNMRVY_ 0 0 0 nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4 nc|ENSG00000124067|Q9UP95-3|SLC12A4 nc|ENSG00000124067|Q9UP95-3|SLC12A4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2781982421875 2 541.276583 1080.53861 NaN NaN NaN NaN NaN NaN NaN 41.082 1 38.592 38.092 39.092 -2.4896 0 0 0 0.19638 1 7366 7366 0.12781 0.054551 1 4470 3289 2670 2673 4815 4815 0.0015661494007872534 ATLNVESAV 9 Unmodified _ATLNVESAV_ 0 0 0 REV__ENSG00000089048|ENST00000617257|ESF1 REV__ENSG00000089048|ENST00000617257|ESF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.74761962890625 2 452.242732 902.470912 0.38976 0.00017627 -0.25668 -0.00011608 0.13308 6.0186E-05 452.2425720919918 50.972 0.80005 50.972 50.504 51.304 0 67 22 4 0 0 0 0.55979 1 9636 9636 15.847 3.3156 1 31059000 + 4471 14517 2671 2674 4816 4816 0.015774882809068913 ATLQWLEE 8 Unmodified _ATLQWLEE_ 0 0 0 ENSG00000111783|ENST00000392842|RFX4;nc|ENSG00000111783|Q33E94-2|RFX4;RFX4|p.V242Cfs*8|1|0.2|ENSG00000111783|chr12:106696337-106696337|G/-|frameshift_variant;nc|ENSG00000111783|Q33E94-4|RFX4;ENST00000536688.5_1_12:106995054-107126892:+|nuORF ENSG00000111783|ENST00000392842|RFX4 ENSG00000111783|ENST00000392842|RFX4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 330.0125427246094 3 330.502797 988.486562 -1.0768 -0.00035589 1.2298 0.00040646 0.15301 5.0569E-05 330.50312455408863 23.612 0.42196 21.824 21.662 22.084 -1.7886 24 11 3 0 0 0 1.0248 1 3790 3790 6.7232 0 1 1972200 4472 2646 2672 2675 4817 4817 -0.00814225202043417 ATLRAQGQLL 10 Unmodified _ATLRAQGQLL_ 0 0 0 KLHL26|p.Q369Sfs*22|1|0.21|ENSG00000167487|chr19:18668496-18668496|G/-|frameshift_variant;ENSG00000167487|ENST00000300976|KLHL26 KLHL26|p.Q369Sfs*22|1|0.21|ENSG00000167487|chr19:18668496-18668496|G/-|frameshift_variant KLHL26|p.Q369Sfs*22|1|0.21|ENSG00000167487|chr19:18668496-18668496|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5484313964844 3 357.548741 1069.62439 -0.30575 -0.00010932 0.022915 8.1933E-06 -0.28284 -0.00010113 357.54873532620655 76.159 0.70627 72.744 72.439 73.145 -3.4151 26 19 2 0 0 0 0.75917 1 14938 14938 2.8433 0.10809 1 1465000 4473 5812 2673 2676 4818 4818 0.09236523117237994 ATLRDAAVY 9 Unmodified _ATLRDAAVY_ 0 0 0 nc|ENSG00000211812|A0A0B4J265|TRAV26-2 nc|ENSG00000211812|A0A0B4J265|TRAV26-2 nc|ENSG00000211812|A0A0B4J265|TRAV26-2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26531982421875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 53.257 1 50.169 49.669 50.669 -3.0876 0 0 0 0.19684 1 9801 9801 0.40827 0.028676 1 4474 12580 2674 2677 4819 4819 0.023328834091216777 ATLREQGAL 9 Unmodified _ATLREQGAL_ 0 0 0 REV__ENST00000588753.1_1_21:47664478-47664547:+|nuORF REV__ENST00000588753.1_1_21:47664478-47664547:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2350769042969 2 479.769448 957.524344 0.34294 0.00016453 -0.62662 -0.00030063 -0.28368 -0.0001361 479.7691171193808 34.183 0.48838 31.967 31.74 32.229 -2.2158 33 13 3 0 0 0 0.62102 1 5982 5982 11.64 1.4569 1 5363700 + 4475 23299 2675 2678 4820 4820 0.04388285783431911 ATLREQGAL 9 Unmodified _ATLREQGAL_ 0 0 0 REV__ENST00000588753.1_1_21:47664478-47664547:+|nuORF REV__ENST00000588753.1_1_21:47664478-47664547:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.769448 957.524344 -0.026274 -1.2605E-05 -0.15778 -7.5699E-05 -0.18405 -8.8304E-05 479.7693241893296 32.121 0.48358 32.121 31.879 32.363 0 0.13541 0.0001554 NaN 11.64 36 13 3 NaN NaN NaN NaN 0 NaN NaN 0 6963900 + 4476 23299 2675 2678 0.04388285783431911 ATLREQGAL 9 Unmodified _ATLREQGAL_ 0 0 0 REV__ENST00000588753.1_1_21:47664478-47664547:+|nuORF REV__ENST00000588753.1_1_21:47664478-47664547:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.769448 957.524344 0.2118 0.00010162 -0.4567 -0.00021911 -0.2449 -0.00011749 479.76917852643214 34.119 0.48067 31.972 31.742 32.222 -2.1468 -0.013445 -0.00013142 NaN 11.64 33 13 3 NaN NaN NaN NaN 0 NaN NaN 0 7140400 + 4477 23299 2675 2678 0.04388285783431911 ATLREQGAL 9 Unmodified _ATLREQGAL_ 0 0 0 REV__ENST00000588753.1_1_21:47664478-47664547:+|nuORF REV__ENST00000588753.1_1_21:47664478-47664547:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 479.769448 957.524344 0.34294 0.00016453 -0.62662 -0.00030063 -0.28368 -0.0001361 479.7691171193808 34.183 0.48838 31.967 31.74 32.229 -2.2158 -0.01851 -0.00029446 NaN 11.64 33 13 3 NaN NaN NaN NaN 0 NaN NaN 0 5363700 + 4478 23299 2675 2678 0.04388285783431911 ATLRRKGWVEK 11 Unmodified _ATLRRKGWVEK_ 0 0 0 TTLL8|p.A70T|1|0.36|ENSG00000138892|chr22:50050199-50050199|C/T|missense_variant TTLL8|p.A70T|1|0.36|ENSG00000138892|chr22:50050199-50050199|C/T|missense_variant TTLL8|p.A70T|1|0.36|ENSG00000138892|chr22:50050199-50050199|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 448.35015869140625 3 448.601727 1342.78335 -0.22473 -0.00010081 -0.28361 -0.00012723 -0.50834 -0.00022804 448.9357248410268 34.163 0.2146 31.845 31.767 31.981 -2.3175 6 5 2 0 0 0 0.96219 1 6260 6260 0.064406 0 1 336880 4479 26535 2676 2679 4821 4821 0.12567236745326227 ATLRRLALPSY 11 Unmodified _ATLRRLALPSY_ 0 0 0 REV__ENSG00000182223|ENST00000327939|ZAR1 REV__ENSG00000182223|ENST00000327939|ZAR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.764892578125 2 630.874779 1259.73501 NaN NaN NaN NaN NaN NaN NaN 48.574 1 45.625 45.125 46.125 -2.9499 0 0 0 0.23634 1 8893 8893 3.2813 0.28607 1 + 4480 18767 2677 2680 4822 4822 0.11552743105471563 ATLRVALAIP 10 Unmodified _ATLRVALAIP_ 0 0 0 REV__ENST00000514057.1_1_1:569411-569753:+|nuORF REV__ENST00000514057.1_1_1:569411-569753:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.2281494140625 3 342.221965 1023.64407 NaN NaN NaN NaN NaN NaN NaN 59.144 1 59.144 58.644 59.644 0 0 0 0 0.22588 1 11329 11329 1.9064 0 1 + 4481 22574 2678 2681 4823 4823 0.13318899127966688 ATLSACLVPS 10 Unmodified _ATLSACLVPS_ 0 0 0 ENST00000228872.8_1_12:12870397-12870556:+|nuORF ENST00000228872.8_1_12:12870397-12870556:+|nuORF ENST00000228872.8_1_12:12870397-12870556:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2541809082031 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 55.898 1 55.898 55.398 56.398 0 0 0 0 0.22588 1 10674 10674 9.3831 0.035688 1 4482 8150 2679 2682 4824 4824 0.013190054429287557 ATLSTPNPD 9 Unmodified _ATLSTPNPD_ 0 0 0 nc|ENSG00000100593|Q6H9L7-2|ISM2;nc|ENSG00000100593|Q6H9L7-3|ISM2;ENSG00000100593|ENST00000342219|ISM2 nc|ENSG00000100593|Q6H9L7-2|ISM2 nc|ENSG00000100593|Q6H9L7-2|ISM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2249450683594 2 458.224539 914.434526 -0.040083 -1.8367E-05 0.60919 0.00027915 0.56911 0.00026078 458.2248023389424 48.162 0.45258 45.22 44.972 45.425 -2.9421 17 12 2 0 0 0 0.48181 1 8808 8808 0.12781 0 1 713540 4483 1993 2680 2683 4825 4825 -0.026113886158213973 ATLTRQAF 8 Unmodified _ATLTRQAF_ 0 0 0 REV__ENSG00000127415|ENST00000514224|IDUA REV__ENSG00000127415|ENST00000514224|IDUA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7595520019531 2 454.253434 906.492316 -0.37694 -0.00017123 0.43344 0.00019689 0.056495 2.5663E-05 454.2536032082001 35.215 0.35242 32.821 32.634 32.987 -2.3938 12 9 2 0 0 0 0.88445 1 6458 6458 0.62683 0.56284 1 566390 + 4484 15885 2681 2684 4826 4826 0.03532918100279403 ATLTTYMK 8 Unmodified _ATLTTYMK_ 0 0 0 REV__nc|ENSG00000140525|Q9NVI1-2|FANCI REV__nc|ENSG00000140525|Q9NVI1-2|FANCI MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1643371582031 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 127.42 1 122.62 122.12 123.12 -4.7958 0 0 0 0.2386 1 24457 24457 0.12286 0 1 + 4485 16583 2682 2685 4827 4827 0.006916204142157767 ATLTVMVID 9 Unmodified _ATLTVMVID_ 0 0 0 DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant;ENSG00000166341|ENST00000299441|DCHS1 DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7655334472656 2 481.764986 961.515419 NaN NaN NaN NaN NaN NaN NaN 51.65 1 51.65 51.15 52.15 0 0 0 0 0.22251 1 9804 9804 16.942 0 1 4486 789 2683 2686 4828 4828 0.03312176102747344 ATLTVMVID 9 Unmodified _ATLTVMVID_ 0 0 0 DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant;ENSG00000166341|ENST00000299441|DCHS1 DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7657775878906 2 481.764986 961.515419 NaN NaN NaN NaN NaN NaN NaN 54.958 1 51.821 51.321 52.321 -3.1377 0 0 0 0.20155 1 10188 10188 23.148 10.617 1 4487 789 2683 2686 4829 4829 0.03312176102747344 ATLTVVKLA 9 Unmodified _ATLTVVKLA_ 0 0 0 REV__ENSG00000064115|ENST00000343028|TM7SF3 REV__ENSG00000064115|ENST00000343028|TM7SF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2322998046875 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 37.197 1 34.849 34.349 35.349 -2.3479 0 0 0 0.1963 1 6591 6591 0.029283 0 1 + 4488 14163 2684 2687 4830 4830 0.11936118971050291 ATLVLVPPP 9 Unmodified _ATLVLVPPP_ 0 0 0 REV__ENSG00000180929|ENST00000322241|GPR62 REV__ENSG00000180929|ENST00000322241|GPR62 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75433349609375 2 453.786579 905.558604 0.26713 0.00012122 -0.011952 -5.4236E-06 0.25517 0.00011579 453.7864828133399 29.083 0.45318 27.191 26.912 27.366 -1.8928 16 12 2 0 0 0 0.87888 1 4944 4944 2.0598 1.3694 1 507850 + 4489 18707 2685 2688 4831 4831 0.1020473394231658 ATLYKLLEK 9 Unmodified _ATLYKLLEK_ 0 0 0 REV__ENSG00000186130|ENST00000373659|ZBTB6 REV__ENSG00000186130|ENST00000373659|ZBTB6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2127380371094 3 360.221742 1077.6434 NaN NaN NaN NaN NaN NaN NaN 36.423 1 34.075 33.575 34.575 -2.3479 0 0 0 0.23508 1 6439 6439 1.0715 0 1 + 4490 19014 2686 2689 4832 4832 0.10768059688280118 ATLYKLLEK 9 Unmodified _ATLYKLLEK_ 0 0 0 REV__ENSG00000186130|ENST00000373659|ZBTB6 REV__ENSG00000186130|ENST00000373659|ZBTB6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2157897949219 3 360.221742 1077.6434 NaN NaN NaN NaN NaN NaN NaN 36.054 1 33.778 33.278 34.278 -2.2766 0 0 0 0.23508 1 6354 6354 1.0715 0 1 + 4491 19014 2686 2689 4833 4833 0.10768059688280118 ATMEHQDPD 9 Unmodified _ATMEHQDPD_ 0 0 0 REV__ENST00000445118.6_1_1:789174-789219:+|nuORF REV__ENST00000445118.6_1_1:789174-789219:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26318359375 2 522.208563 1042.40257 NaN NaN NaN NaN NaN NaN NaN 133.15 1 133.15 132.65 133.65 0 0 0 0 0.23508 1 26336 26336 7.2892 0.56607 1 + 4492 21747 2687 2690 4834 4834 -0.11693124361249829 ATMGYWEQFLI 11 Unmodified _ATMGYWEQFLI_ 0 0 0 REV__NIPAL1|p.S365Nfs*17|1|0.05|ENSG00000163293|chr4:48036032-48036033|-/ATAAGATG|frameshift_variant REV__NIPAL1|p.S365Nfs*17|1|0.05|ENSG00000163293|chr4:48036032-48036033|-/ATAAGATG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7598876953125 3 453.553163 1357.63766 NaN NaN NaN NaN NaN NaN NaN 64.834 1 64.834 64.334 65.334 0 0 0 0 0.23491 1 12485 12485 4.4062 0.28952 1 + 4493 17557 2688 2691 4835 4835 -0.0268540688568919 ATMHAIHQA 9 Unmodified _ATMHAIHQA_ 0 0 0 REV__IKBKE|p.T373M|1|0.34|ENSG00000263528|chr1:206479068-206479068|C/T|missense_variant REV__IKBKE|p.T373M|1|0.34|ENSG00000263528|chr1:206479068-206479068|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2688903808594 2 490.242544 978.470534 0.11646 5.7092E-05 -0.35665 -0.00017485 -0.2402 -0.00011776 490.2425687415297 34.519 0.31838 32.303 32.193 32.511 -2.2158 10 8 2 0 0 0 0.84208 1 6078 6078 3.9444 0 1 417120 + 4494 23653 2689 2692 4836 4836 -0.019562099199447402 ATMKILDQ 8 Unmodified _ATMKILDQ_ 0 0 0 REV__ANK2|p.E1746*|1|0.07|ENSG00000145362|chr4:113353848-113353849|-/C|frameshift_variant REV__ANK2|p.E1746*|1|0.07|ENSG00000145362|chr4:113353848-113353849|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2488098144531 2 460.249503 918.484453 NaN NaN NaN NaN NaN NaN NaN 22.623 1 20.835 20.335 21.335 -1.7886 0 0 0 0.21486 1 3600 3600 12.532 0.89125 1 + 4495 13045 2690 2693 4837 4837 0.021950227884985907 ATMPLCKVV 9 Unmodified _ATMPLCKVV_ 0 0 0 REV__CFH|p.V149M|1|0.43|ENSG00000000971|chr1:196677493-196677493|G/A|missense_variant REV__CFH|p.V149M|1|0.43|ENSG00000000971|chr1:196677493-196677493|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7656555175781 2 481.264099 960.513645 0.085706 4.1247E-05 0.94382 0.00045423 1.0295 0.00049547 481.2645187441122 53.995 1.1555 50.86 50.38 51.535 -3.1352 68 32 3 0 0 0 0.54354 1 9893 9893 16.942 1.0951 1 9031200 + 4496 13392 2691 2694 4838 4838 0.03180843813140655 ATNAHLDHHY 10 Unmodified _ATNAHLDHHY_ 0 0 0 FCHSD1|p.Y225H|1|0.04|ENSG00000197948|chr5:141648000-141648000|A/G|missense_variant FCHSD1|p.Y225H|1|0.04|ENSG00000197948|chr5:141648000-141648000|A/G|missense_variant FCHSD1|p.Y225H|1|0.04|ENSG00000197948|chr5:141648000-141648000|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.248046875 2 589.770511 1177.52647 0.44614 0.00026312 4.3224 0.0025492 4.7686 0.0028124 589.7709006334409 131.96 0.1385 127.1 127.01 127.15 -4.8528 6 3 2 0 0 0 0.871 1 25340 25340 3.2813 1.4371 1 847880 4497 11812 2692 2695 4839 4839 -0.055192854787719625 ATNNSKWV 8 Unmodified _ATNNSKWV_ 0 0 0 NMNAT1|p.K75N|1|0.24|ENSG00000173614|chr1:9975701-9975701|G/T|missense_variant NMNAT1|p.K75N|1|0.24|ENSG00000173614|chr1:9975701-9975701|G/T|missense_variant NMNAT1|p.K75N|1|0.24|ENSG00000173614|chr1:9975701-9975701|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23486328125 2 460.235242 918.45593 -0.086344 -3.9739E-05 0.32173 0.00014807 0.23538 0.00010833 460.23554159284356 48.42 0.662 45.471 45.226 45.888 -2.9499 38 18 3 0 0 0 0.74398 1 8937 8937 7.9102 2.6795 1 1488000 4498 12694 2693 2696 4840 4840 -0.006559587964261482 ATPDGGGHHL 10 Unmodified _ATPDGGGHHL_ 0 0 0 REV__ENSG00000187017|ENST00000645284|ESPN REV__ENSG00000187017|ENST00000645284|ESPN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25390625 2 481.227948 960.441343 NaN NaN NaN NaN NaN NaN NaN 93.454 1 89.311 88.811 89.811 -4.1435 0 0 0 0.22576 1 17814 17814 14.838 4.6549 1 + 4499 19071 2694 2697 4841 4841 -0.040460309445848 ATPDINPHP 9 Unmodified _ATPDINPHP_ 0 0 0 nc|ENSG00000108262|Q9Y2X7-2|GIT1 nc|ENSG00000108262|Q9Y2X7-2|GIT1 nc|ENSG00000108262|Q9Y2X7-2|GIT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2406311035156 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 57.214 1 54.025 53.525 54.525 -3.1895 0 0 0 0.1761 1 10619 10619 26.884 2.8631 1 4500 12278 2695 2698 4842 4842 -0.015319761420187206 ATPENDNTLC 10 Unmodified _ATPENDNTLC_ 0 0 0 CCNG2|p.F70Lfs*22|1|0.22|ENSG00000138764|chr4:77159433-77159433|T/-|frameshift_variant;CCNG2|p.I144Nfs*13|1|0.14|ENSG00000138764|chr4:77160874-77160875|-/ACAAGAGGCTTCT|frameshift_variant;nc|ENSG00000138764|Q16589-2|CCNG2;ENSG00000138764|ENST00000316355|CCNG2;ENST00000497512.5_1_4:78078410-78106259:+|nuORF CCNG2|p.F70Lfs*22|1|0.22|ENSG00000138764|chr4:77159433-77159433|T/-|frameshift_variant CCNG2|p.F70Lfs*22|1|0.22|ENSG00000138764|chr4:77159433-77159433|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2143249511719 3 359.822089 1076.44444 0.081329 2.9264E-05 0.64178 0.00023093 0.72311 0.00026019 359.8222531578318 25.377 0.45124 23.843 23.609 24.06 -1.5342 27 12 3 0 0 0 0.88998 1 4170 4170 7.0371 0 1 1655800 4501 431 2696 2699 4843 4843 -0.09072568672741 ATPEWAVLL 9 Unmodified _ATPEWAVLL_ 0 0 0 MFSD12|p.A127V|1|0.35|ENSG00000161091|chr19:3551113-3551113|G/A|missense_variant MFSD12|p.A127V|1|0.35|ENSG00000161091|chr19:3551113-3551113|G/A|missense_variant MFSD12|p.A127V|1|0.35|ENSG00000161091|chr19:3551113-3551113|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 500.27099609375 2 500.279118 998.543683 NaN NaN NaN NaN NaN NaN NaN 70.918 1 67.338 66.838 67.838 -3.5798 0 0 0 0.23508 1 13371 13371 12.532 0.89125 1 4502 12137 2697 2700 4844 4844 0.04435242074339385 ATPGLVLPLY 10 Unmodified _ATPGLVLPLY_ 0 0 0 REV__ENSG00000005381|ENST00000225275|MPO REV__ENSG00000005381|ENST00000225275|MPO MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2713012695312 2 522.310418 1042.60628 0.0017039 8.8998E-07 0.014368 7.5046E-06 0.016072 8.3946E-06 522.3104058695383 43.67 0.62795 40.922 40.591 41.219 -2.7475 43 17 3 0 0 0 0.75565 1 7924 7924 3.9444 3.9444 1 5228400 + 4503 13857 2698 2701 4845 4845 0.08668388142541517 ATPGLVLPLY 10 Unmodified _ATPGLVLPLY_ 0 0 0 REV__ENSG00000005381|ENST00000225275|MPO REV__ENSG00000005381|ENST00000225275|MPO MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.310418 1042.60628 -0.2896 -0.00015126 0.33714 0.00017609 0.04754 2.483E-05 522.3105308957039 43.748 0.6235 40.958 40.668 41.291 -2.79 0.019576 -5.3195E-05 NaN 3.9444 44 17 4 NaN NaN NaN NaN 0 NaN NaN 0 7428700 + 4504 13857 2698 2701 0.08668388142541517 ATPGTVTPQPP 11 Unmodified _ATPGTVTPQPP_ 0 0 0 nc|ENSG00000185340|Q99501-3|GAS2L1 nc|ENSG00000185340|Q99501-3|GAS2L1 nc|ENSG00000185340|Q99501-3|GAS2L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.286376953125 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 46.631 1 46.631 46.131 47.131 0 0 0 0 0.23018 1 8786 8786 8.1555 0.24537 1 4505 12510 2699 2702 4846 4846 0.020531352350417365 ATPIYLDIL 9 Unmodified _ATPIYLDIL_ 0 0 0 nc|ENSG00000140538|Q16288-5|NTRK3;nc|ENSG00000140538|Q16288-4|NTRK3;ETV6-NTRK3|2|fusion;ETV6-NTRK3|1|fusion;nc|ENSG00000140538|Q16288-3|NTRK3;ENSG00000140538|ENST00000629765|NTRK3 nc|ENSG00000140538|Q16288-5|NTRK3 nc|ENSG00000140538|Q16288-5|NTRK3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.01885986328125 3 340.198826 1017.57465 -1.858 -0.00063209 -0.76314 -0.00025962 -2.6211 -0.0008917 340.198550432477 18.413 0.27413 16.898 16.712 16.986 -1.5148 11 7 2 0 0 0 0.88413 1 2733 2733 1.0715 0 1 163930 4506 12357 2700 2703 4847 4847 0.06656395388586134 ATPLRSQGNMW 11 Unmodified _ATPLRSQGNMW_ 0 0 0 REV__ENST00000342291.2_1_19:48967690-48967876:+|nuORF REV__ENST00000342291.2_1_19:48967690-48967876:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.3226318359375 3 420.87664 1259.60809 -0.53476 -0.00022507 -3.9626 -0.0016678 -4.4973 -0.0018928 421.2096801539792 37.556 0.62349 35.087 34.674 35.297 -2.4688 21 17 2 0 0 0 0.96157 1 6961 6961 1.2148 0.10508 1 408520 + 4507 20722 2701 2704 4848 4848 -0.011329261111768574 ATPLSRPRE 9 Unmodified _ATPLSRPRE_ 0 0 0 REV__ENST00000602285.1_1_5:176560811-176562089:+|nuORF REV__ENST00000602285.1_1_5:176560811-176562089:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.8417663574219 3 342.861207 1025.56179 -0.359 -0.00012309 0.27086 9.2868E-05 -0.08814 -3.022E-05 342.8612572404254 34.789 1.0364 34.789 34.346 35.382 0 56 29 3 0 0 0 0.60951 1 6301 6301 0.12781 0 1 1102400 + 4508 23423 2702 2705 4849 4849 0.05003377049047231 ATPLSRPRE 9 Unmodified _ATPLSRPRE_ 0 0 0 REV__ENST00000602285.1_1_5:176560811-176562089:+|nuORF REV__ENST00000602285.1_1_5:176560811-176562089:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 342.861207 1025.56179 -0.67154 -0.00023025 0.73155 0.00025082 0.060003 2.0573E-05 342.8614278091027 37.21 0.89491 34.741 34.188 35.083 -2.4688 -0.0040336 0.00041314 NaN 0.12781 55 25 3 NaN NaN NaN NaN 0 NaN NaN 0 1130600 + 4509 23423 2702 2705 0.05003377049047231 ATPLSRPRE 9 Unmodified _ATPLSRPRE_ 0 0 0 REV__ENST00000602285.1_1_5:176560811-176562089:+|nuORF REV__ENST00000602285.1_1_5:176560811-176562089:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 342.861207 1025.56179 0.10345 3.547E-05 -0.085791 -2.9414E-05 0.017661 6.0553E-06 342.86110878496606 37.121 0.95926 34.773 34.208 35.167 -2.3479 0.028509 -0.00042756 NaN 0.12781 58 27 3 NaN NaN NaN NaN 0 NaN NaN 0 1607600 + 4510 23423 2702 2705 0.05003377049047231 ATPLSRPRE 9 Unmodified _ATPLSRPRE_ 0 0 0 REV__ENST00000602285.1_1_5:176560811-176562089:+|nuORF REV__ENST00000602285.1_1_5:176560811-176562089:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.861207 1025.56179 -0.4414 -0.00015134 0.46442 0.00015923 0.023023 7.8938E-06 342.8613184872867 37.014 0.87634 34.677 34.312 35.188 -2.3375 -0.068398 0.00013838 NaN 0.12781 54 24 3 NaN NaN NaN NaN 0 NaN NaN 0 914890 + 4511 23423 2702 2705 0.05003377049047231 ATPPSVHLSL 10 Unmodified _ATPPSVHLSL_ 0 0 0 nc|ENSG00000144306|Q0VDG4-2|SCRN3;ENST00000458563.5_1_2:175260481-175262068:+|nuORF;ENST00000490927.5_1_2:175260481-175264666:+|nuORF;ENST00000437944.5_1_2:175260481-175263028:+|nuORF;ENST00000435964.1_1_2:175260481-175260580:+|nuORF nc|ENSG00000144306|Q0VDG4-2|SCRN3 nc|ENSG00000144306|Q0VDG4-2|SCRN3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 341.18609619140625 3 341.194075 1020.5604 NaN NaN NaN NaN NaN NaN NaN 110.8 1 106.31 105.81 106.81 -4.4915 0 0 0 0.22588 1 21269 21269 1.7423 0.089654 1 4512 12365 2703 2706 4850 4850 0.050937429602981865 ATPRPFPPP 9 Unmodified _ATPRPFPPP_ 0 0 0 ENST00000289081.7_1_9:97861636-97862104:-|nuORF ENST00000289081.7_1_9:97861636-97862104:-|nuORF ENST00000289081.7_1_9:97861636-97862104:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2713928222656 2 490.271627 978.528701 NaN NaN NaN NaN NaN NaN NaN 22.756 1 21.202 20.702 21.702 -1.5532 0 0 0 0.23508 1 3902 3902 8.5933 0 1 4513 8465 2704 2707 4851 4851 0.03857794996986286 ATPRSQPY 8 Unmodified _ATPRSQPY_ 0 0 0 REV__nc|nan|Q9H7T3|C10orf95 REV__nc|nan|Q9H7T3|C10orf95 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24652099609375 2 460.235242 918.45593 0.072592 3.341E-05 0.07648 3.5199E-05 0.14907 6.8609E-05 460.2353432819689 58.086 0.58355 54.881 54.579 55.163 -3.2052 21 16 2 0 0 0 0.71273 1 10877 10877 12.532 0 1 647520 + 4514 24340 2705 2708 4852 4852 -0.006559587964261482 ATPSLWTGP 9 Unmodified _ATPSLWTGP_ 0 0 0 REV__ENST00000575894.1_1_16:697728-698187:+|nuORF REV__ENST00000575894.1_1_16:697728-698187:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2410583496094 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 41.826 1 39.22 38.72 39.72 -2.606 0 0 0 0.22251 1 7511 7511 16.942 0 1 + 4515 23206 2706 2709 4853 4853 -0.0016619051091311121 ATPTAENPPAP 11 Unmodified _ATPTAENPPAP_ 0 0 0 REV__nc|ENSG00000163531|O94856-12|NFASC REV__nc|ENSG00000163531|O94856-12|NFASC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.263916015625 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 53.201 1 50.317 49.817 50.817 -2.8837 0 0 0 0.22765 1 10132 10132 10.151 0.76745 1 + 4516 24130 2707 2710 4854 4854 -0.015837416616705013 ATPTAENPPAP 11 Unmodified _ATPTAENPPAP_ 0 0 0 REV__nc|ENSG00000163531|O94856-12|NFASC REV__nc|ENSG00000163531|O94856-12|NFASC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2643432617188 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 53.552 1 50.456 49.956 50.956 -3.0954 0 0 0 0.20577 1 9895 9895 17.443 2.861 1 + 4517 24130 2707 2710 4855 4855 -0.015837416616705013 ATPTCLAAPA 10 Unmodified _ATPTCLAAPA_ 0 0 0 ENST00000397637.5_1_21:48055700-48056138:+|nuORF ENST00000397637.5_1_21:48055700-48056138:+|nuORF ENST00000397637.5_1_21:48055700-48056138:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2341613769531 2 458.233853 914.453153 NaN NaN NaN NaN NaN NaN NaN 29.968 1 29.968 29.468 30.468 0 0 0 0 0.22576 1 5375 5375 14.838 0 1 4518 9470 2708 2711 4856 4856 -0.007495502456094982 ATPVQTSQPD 10 Unmodified _ATPVQTSQPD_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2711181640625 2 522.253828 1042.4931 -0.05416 -2.8285E-05 0.78242 0.00040862 0.72826 0.00038033 522.2542050886761 79.59 1.1548 75.914 75.304 76.458 -3.676 71 32 3 0 0 0 0.41575 1 15126 15126 36.127 7.0454 1 18547000 4519 2778 2709 2712 4857 4857 -0.026443320413363836 ATPVTMDRVRY 11 Unmodified _ATPVTMDRVRY_ 0 0 0 REV__nc|ENSG00000173239|Q5VYY2-2|LIPM REV__nc|ENSG00000173239|Q5VYY2-2|LIPM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2293701171875 3 436.895812 1307.66561 -0.17858 -7.8022E-05 0.25092 0.00010962 0.072333 3.1602E-05 436.8958873444966 55.773 0.45491 52.597 52.414 52.869 -3.1761 19 12 2 0 0 0 0.79428 1 10345 10345 4.4062 0.28952 1 2891100 + 4520 18344 2710 2713 4858 4858 0.02407916094398388 ATPYSLSMFY 10 Unmodified _ATPYSLSMFY_ 0 0 0 TAS2R30|p.T100_S101insPY|1|0.04|ENSG00000256188|chr12:11133944-11133945|-/GTATGG|inframe_insertion TAS2R30|p.T100_S101insPY|1|0.04|ENSG00000256188|chr12:11133944-11133945|-/GTATGG|inframe_insertion TAS2R30|p.T100_S101insPY|1|0.04|ENSG00000256188|chr12:11133944-11133945|-/GTATGG|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.27490234375 2 590.273175 1178.5318 NaN NaN NaN NaN NaN NaN NaN 37.698 1 35.35 34.85 35.85 -2.3479 0 0 0 0.22588 1 6685 6685 7.2892 0.56607 1 4521 25820 2711 2714 4859 4859 -0.05032742731145845 ATQDQTLTGF 10 Unmodified _ATQDQTLTGF_ 0 0 0 REV__ENST00000355068.4_1_17:7213473-7213746:+|nuORF REV__ENST00000355068.4_1_17:7213473-7213746:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2630004882812 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 79.878 1 76.073 75.573 76.573 -3.8048 0 0 0 0.22566 1 15158 15158 16.149 0 1 + 4522 20787 2712 2715 4860 4860 -0.028280455242793323 ATQELIWT 8 Unmodified _ATQELIWT_ 0 0 0 REV__ENSG00000241127|ENST00000223273|YAE1 REV__ENSG00000241127|ENST00000223273|YAE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.253173828125 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 86.989 1 83.262 82.762 83.762 -3.727 0 0 0 0.20294 1 17006 17006 23.148 2.2772 1 + 4523 19783 2713 2716 4861 4861 0.00982078660570096 ATQGRRSGF 9 Unmodified _ATQGRRSGF_ 0 0 0 REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27398681640625 2 490.25704 978.499526 NaN NaN NaN NaN NaN NaN NaN 46.983 1 44.041 43.541 44.541 -2.9421 0 0 0 0.22621 1 8553 8553 15.847 3.3156 1 + 4524 19883 2714 2717 4862 4862 0.009416507007131258 ATQKDLASGA 10 Unmodified _ATQKDLASGA_ 0 0 0 MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2487487792969 2 481.251089 960.487624 0.08258 3.9742E-05 -0.81517 -0.0003923 -0.73259 -0.00035256 481.2505084892255 37.909 2.4506 37.909 36.887 39.338 0 134 69 4 0 0 0 0.25854 1 6813 6813 3.104 0 1 99259000 4525 5772 2715 2718 4863 4863 0.005799891668630153 ATQKDLASGA 10 Unmodified _ATQKDLASGA_ 0 0 0 MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2483825683594 2 481.251089 960.487624 -0.20207 -9.7244E-05 -1.0036 -0.00048299 -1.2057 -0.00058023 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 0.23665 2 7581 7581;7634 1.0651 0 1 85144000 4526 5772 2715 2718 4864;4865 4864 0.005799891668630153 ATQKDLASGA 10 Unmodified _ATQKDLASGA_ 0 0 0 MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.248291015625 2 481.251089 960.487624 0.021637 1.0413E-05 -1.1165 -0.00053734 -1.0949 -0.00052693 481.2503997935835 40.302 3.026 37.762 36.657 39.683 -2.5398 141 85 2 0 0 0 0.2122 1 7142 7142 3.104 1.4121 1 101380000 4527 5772 2715 2718 4866 4866 0.005799891668630153 ATQKDLASGA 10 Unmodified _ATQKDLASGA_ 0 0 0 MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2481689453125 2 481.251089 960.487624 0.039845 1.9176E-05 -1.0501 -0.00050534 -1.0102 -0.00048616 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 0.13997 1 7112 7112 1.0651 0 1 69706000 4528 5772 2715 2718 4867 4867 0.005799891668630153 ATQKDLIAT 9 Unmodified _ATQKDLIAT_ 0 0 0 nc|ENSG00000102021|Q9P127-2|LUZP4;LUZP4|p.I274Sfs*10|1|0.33|ENSG00000102021|chrX:115306682-115306683|AT/-|frameshift_variant;ENSG00000102021|ENST00000371920|LUZP4 nc|ENSG00000102021|Q9P127-2|LUZP4 nc|ENSG00000102021|Q9P127-2|LUZP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7745056152344 2 480.771657 959.528761 -0.028459 -1.3682E-05 -0.10755 -5.1705E-05 -0.13601 -6.5388E-05 480.7715905766152 86.763 0.63651 83.036 82.728 83.365 -3.727 40 17 3 0 0 0 0.42844 1 16987 16987 24.021 1.2843 1 3939400 4529 2104 2716 2719 4868 4868 0.04737750206345481 ATQKDLTGQ 9 Unmodified _ATQKDLTGQ_ 0 0 0 MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant;MAP1B|p.E2165Gfs*3|1|0.32|ENSG00000131711|chr5:72199841-72199842|-/C|frameshift_variant;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant;ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.P752Tfs*35|2|0.37|ENSG00000131711|chr5:72195601-72195602|-/A|frameshift_variant;MAP1B|p.E871Afs*22|1|0.13|ENSG00000131711|chr5:72195965-72195966|TG/-|frameshift_variant MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2480163574219 2 481.251089 960.487624 -0.20207 -9.7244E-05 -1.0036 -0.00048299 -1.2057 -0.00058023 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 0.12369 2 7391 7391;7441 1.6919 0 1 85144000 4530 3689 2717 2720 4869;4870 4869 0.005799891668630153 ATQKDLTGQ 9 Unmodified _ATQKDLTGQ_ 0 0 0 MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant;MAP1B|p.E2165Gfs*3|1|0.32|ENSG00000131711|chr5:72199841-72199842|-/C|frameshift_variant;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant;ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.P752Tfs*35|2|0.37|ENSG00000131711|chr5:72195601-72195602|-/A|frameshift_variant;MAP1B|p.E871Afs*22|1|0.13|ENSG00000131711|chr5:72195965-72195966|TG/-|frameshift_variant MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2362976074219 2 481.251089 960.487624 0.021637 1.0413E-05 -1.1165 -0.00053734 -1.0949 -0.00052693 481.2503997935835 40.302 3.026 37.762 36.657 39.683 -2.5398 141 85 2 0 0 0 0.1804 1 7127 7127 1.6919 0 1 101380000 4531 3689 2717 2720 4871 4871 0.005799891668630153 ATQKDLTGQ 9 Unmodified _ATQKDLTGQ_ 0 0 0 MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant;MAP1B|p.E2165Gfs*3|1|0.32|ENSG00000131711|chr5:72199841-72199842|-/C|frameshift_variant;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant;ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.P752Tfs*35|2|0.37|ENSG00000131711|chr5:72195601-72195602|-/A|frameshift_variant;MAP1B|p.E871Afs*22|1|0.13|ENSG00000131711|chr5:72195965-72195966|TG/-|frameshift_variant MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2477722167969 2 481.251089 960.487624 0.039845 1.9176E-05 -1.0501 -0.00050534 -1.0102 -0.00048616 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 0.20054 1 7063 7063 1.6919 0.62673 1 69706000 4532 3689 2717 2720 4872 4872 0.005799891668630153 ATQNVKQLY 9 Unmodified _ATQNVKQLY_ 0 0 0 ENST00000393633.6_1_7:75039867-75040032:+|nuORF ENST00000393633.6_1_7:75039867-75040032:+|nuORF ENST00000393633.6_1_7:75039867-75040032:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2838134765625 2 532.790381 1063.56621 0.47868 0.00025503 -0.15974 -8.5107E-05 0.31894 0.00016993 532.7909886188654 102.74 0.45012 102.74 102.48 102.93 0 17 12 2 0 0 0 0.15214 1 20170 20170 43.858 5.6827 1 2089000 4533 9397 2718 2721 4873 4873 0.03696841471969492 ATQNVKQLY 9 Unmodified _ATQNVKQLY_ 0 0 0 ENST00000393633.6_1_7:75039867-75040032:+|nuORF ENST00000393633.6_1_7:75039867-75040032:+|nuORF ENST00000393633.6_1_7:75039867-75040032:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2681274414062 2 532.790381 1063.56621 -0.32678 -0.0001741 0.36113 0.00019241 0.034356 1.8305E-05 532.790191447817 106.75 0.48578 102.49 102.32 102.8 -4.2638 19 13 2 0 0 0 0.081765 1 21008 21008 61.357 15.337 1 1368700 4534 9397 2718 2721 4874 4874 0.03696841471969492 ATQNVKQLY 9 Unmodified _ATQNVKQLY_ 0 0 0 ENST00000393633.6_1_7:75039867-75040032:+|nuORF ENST00000393633.6_1_7:75039867-75040032:+|nuORF ENST00000393633.6_1_7:75039867-75040032:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.790381 1063.56621 0.39004 0.00020781 0.63516 0.00033841 1.0252 0.00054622 532.7907019851509 106.88 0.35075 102.47 102.3 102.65 -4.4121 -0.11563 0.00018616 NaN 61.357 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1109400 4535 9397 2718 2721 0.03696841471969492 ATQPDAKDTP 10 Unmodified _ATQPDAKDTP_ 0 0 0 SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant;ENSG00000197157|ENST00000354725|SND1;ENST00000463020.1_1_7:127292259-127326828:+|nuORF SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2650756835938 2 522.253828 1042.4931 -0.18264 -9.5385E-05 1.3147 0.0006866 1.132 0.00059121 522.2544688901216 79.481 0.92116 75.971 75.555 76.476 -3.5102 64 25 3 0 0 0 0.29062 2 15491 15491;15559 38.176 3.2435 1 21226000 4536 7337 2719 2722 4875;4876 4875 -0.026443320413363836 ATQQPHQPP 9 Unmodified _ATQQPHQPP_ 0 0 0 REV__ENST00000424383.4_1_7:1784183-1785002:+|nuORF REV__ENST00000424383.4_1_7:1784183-1785002:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.0418701171875 3 335.170041 1002.48829 -0.48272 -0.00016179 0.34017 0.00011402 -0.14255 -4.7779E-05 335.1701520631755 16.943 0.56073 16.943 16.681 17.242 0 42 15 4 0 0 0 0.8825 1 2714 2714 1.0715 0.83562 1 12638000 + 4537 21544 2720 2723 4877 4877 -0.012851713934310283 ATQQPHQPP 9 Unmodified _ATQQPHQPP_ 0 0 0 REV__ENST00000424383.4_1_7:1784183-1785002:+|nuORF REV__ENST00000424383.4_1_7:1784183-1785002:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 335.170041 1002.48829 -0.37046 -0.00012417 0.1948 6.5291E-05 -0.17566 -5.8876E-05 335.1700953617781 18.197 0.49427 16.886 16.614 17.108 -1.3109 -0.0067181 -6.7736E-05 NaN 1.0715 42 13 4 NaN NaN NaN NaN 0 NaN NaN 0 7124900 + 4538 21544 2720 2723 -0.012851713934310283 ATQQPHQPP 9 Unmodified _ATQQPHQPP_ 0 0 0 REV__ENST00000424383.4_1_7:1784183-1785002:+|nuORF REV__ENST00000424383.4_1_7:1784183-1785002:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 335.170041 1002.48829 -0.39409 -0.00013209 0.21561 7.2265E-05 -0.17848 -5.9822E-05 335.17008512005674 18.121 0.50677 16.848 16.593 17.099 -1.2722 -0.044137 -4.6817E-05 NaN 1.0715 43 14 4 NaN NaN NaN NaN 0 NaN NaN 0 5590500 + 4539 21544 2720 2723 -0.012851713934310283 ATQQQQPP 8 Unmodified _ATQQQQPP_ 0 0 0 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1;sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.13995361328125 2 449.224874 896.435195 -0.16214 -7.2837E-05 0.64246 0.00028861 0.48033 0.00021577 449.22524710617284 33.787 0.41075 31.47 31.288 31.699 -2.3175 12 11 2 0 0 0 0.76728 1 6178 6178 5.7604 0.52976 1 437060 4540 25751 2721 2724 4878 4878 -0.017165491760920304 ATQQQQPP 8 Unmodified _ATQQQQPP_ 0 0 0 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1;sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 449.224874 896.435195 0.24415 0.00010968 -1.4399 -0.00064684 -1.1957 -0.00053716 449.2241333534472 31.804 0.20394 31.804 31.741 31.945 0 0.20823 -0.001587 NaN 5.7604 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 571960 4541 25751 2721 2724 -0.017165491760920304 ATQQQQPP 8 Unmodified _ATQQQQPP_ 0 0 0 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1;sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.224874 896.435195 0.17023 7.647E-05 0.414 0.00018598 0.58422 0.00026245 449.2250529284191 33.661 0.20681 31.514 31.393 31.6 -2.1468 -0.082153 7.8612E-05 NaN 5.7604 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 326160 4542 25751 2721 2724 -0.017165491760920304 ATQSPPPMT 9 Unmodified _ATQSPPPMT_ 0 0 0 REV__ENSG00000178591|ENST00000382410|DEFB125 REV__ENSG00000178591|ENST00000382410|DEFB125 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2557678222656 2 465.223485 928.432418 NaN NaN NaN NaN NaN NaN NaN 61.266 1 61.266 60.766 61.766 0 0 0 0 0.23508 1 11756 11756 10.074 1.4806 1 + 4543 18613 2722 2725 4879 4879 -0.03466140625266689 ATQVLMRVY 9 Unmodified _ATQVLMRVY_ 0 0 0 SRL|p.M264V|1|0.34|ENSG00000185739|chr16:4192785-4192785|T/C|missense_variant SRL|p.M264V|1|0.34|ENSG00000185739|chr16:4192785-4192785|T/C|missense_variant SRL|p.M264V|1|0.34|ENSG00000185739|chr16:4192785-4192785|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.239013671875 2 540.797152 1079.57975 0.095673 5.174E-05 0.031654 1.7118E-05 0.12733 6.8858E-05 540.7972957358188 57.701 0.49508 54.798 54.544 55.039 -2.903 19 13 2 0 0 0 0.73309 1 11054 11054 4.756 1.4747 1 764450 4544 25788 2723 2726 4880 4880 0.04314375979538454 ATRAVEPAQQ 10 Unmodified _ATRAVEPAQQ_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7685297-7685959:-|nuORF;ENST00000600230.1_1_19:7685297-7686162:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.54888916015625 3 357.524484 1069.55162 NaN NaN NaN NaN NaN NaN NaN 15.635 1 14.282 13.782 14.782 -1.3534 0 0 0 0.22588 1 2167 2167 2.8433 0.10809 1 4545 1547 2724 2727 4881 4881 0.01962769323813518 ATRDAPWA 8 Unmodified _ATRDAPWA_ 0 0 0 REV__ENSG00000177191|ENST00000691102|B3GNT8 REV__ENSG00000177191|ENST00000691102|B3GNT8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 444.2237243652344 2 444.222134 886.429715 NaN NaN NaN NaN NaN NaN NaN 65.291 1 65.291 64.791 65.791 0 0 0 0 0.21452 1 12584 12584 13.508 3.3245 1 + 4546 18545 2725 2728 4882 4882 -0.01804227967920724 ATRERSSFV 9 Unmodified _ATRERSSFV_ 0 0 0 REV__ENST00000331161.8_1_10:25304942-25305050:-|nuORF REV__ENST00000331161.8_1_10:25304942-25305050:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 351.2376403808594 3 351.520962 1051.54106 -0.24916 -8.7586E-05 0.20625 7.2503E-05 -0.042909 -1.5083E-05 351.8553476460901 28.317 0.17246 28.317 28.18 28.352 0 6 4 2 0 0 0 0.8825 1 5005 5005 1.0715 0.67075 1 285760 + 4547 20611 2726 2729 4883 4883 0.017347866693853575 ATRERSSFV 9 Unmodified _ATRERSSFV_ 0 0 0 REV__ENST00000331161.8_1_10:25304942-25305050:-|nuORF REV__ENST00000331161.8_1_10:25304942-25305050:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 351.520962 1051.54106 0.33462 0.00011763 -0.7345 -0.00025819 -0.39988 -0.00014057 351.52076438292175 30.279 0.17136 28.386 28.279 28.45 -1.8928 0.034425 -0.00055822 NaN 1.0715 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 273210 + 4548 20611 2726 2729 0.017347866693853575 ATRFKEQY 8 Unmodified _ATRFKEQY_ 0 0 0 nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8 nc|ENSG00000131351|Q9BT25-2|HAUS8 nc|ENSG00000131351|Q9BT25-2|HAUS8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2700805664062 2 521.769448 1041.52434 -0.3085 -0.00016096 0.98278 0.00051278 0.67428 0.00035182 521.769434339285 74.069 1.0809 70.705 70.191 71.272 -3.3643 110 30 6 0 0 0 0.68128 1 14541 14541 16.942 1.0951 1 19575000 4549 3667 2727 2730 4884 4884 0.005242857834218739 ATRGHDUAR 9 Unmodified _ATRGHDUAR_ 0 0 0 nc|ENSG00000211452|P49895-8|DIO1;nc|ENSG00000211452|P49895-9|DIO1 nc|ENSG00000211452|P49895-8|DIO1 nc|ENSG00000211452|P49895-8|DIO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.23150634765625 3 345.472492 1033.39565 0.032956 1.1385E-05 0.50331 0.00017388 0.53627 0.00018527 345.472616605384 39.076 0.97606 36.634 36.265 37.241 -2.4419 45 27 2 0 0 0 0.88284 1 7059 7059 0 0 0 1069400 4550 12569 2728 2731 4885 4885 -0.11971499961919108 ATRKAYYK 8 Unmodified _ATRKAYYK_ 0 0 0 ENST00000489691.1_1_X:54558969-54570464:+|nuORF;ENSG00000130119|ENST00000360845|GNL3L ENST00000489691.1_1_X:54558969-54570464:+|nuORF ENST00000489691.1_1_X:54558969-54570464:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 334.0342712402344 3 334.190665 999.550165 0.12137 4.0561E-05 -0.41905 -0.00014004 -0.29768 -9.9483E-05 334.1905489975905 26.039 0.28213 24.404 24.23 24.513 -1.6347 11 7 2 0 0 0 1.0277 1 4278 4278 0 0 1 363660 4551 3586 2729 2732 4886 4886 0.05037180025703947 ATRKAYYK 8 Unmodified _ATRKAYYK_ 0 0 0 ENST00000489691.1_1_X:54558969-54570464:+|nuORF;ENSG00000130119|ENST00000360845|GNL3L ENST00000489691.1_1_X:54558969-54570464:+|nuORF ENST00000489691.1_1_X:54558969-54570464:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 334.190665 999.550165 -0.37333 -0.00012476 0.18925 6.3245E-05 -0.18408 -6.1518E-05 334.19069920697746 24.495 0.30952 24.495 24.371 24.681 0 0.084722 0.00017705 NaN 0 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 762660 4552 3586 2729 2732 0.05037180025703947 ATRKAYYK 8 Unmodified _ATRKAYYK_ 0 0 0 ENST00000489691.1_1_X:54558969-54570464:+|nuORF;ENSG00000130119|ENST00000360845|GNL3L ENST00000489691.1_1_X:54558969-54570464:+|nuORF ENST00000489691.1_1_X:54558969-54570464:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 334.190665 999.550165 -0.68698 -0.00022958 0.50954 0.00017028 -0.17744 -5.9297E-05 334.1907860869978 26.253 0.27464 24.331 24.194 24.469 -1.9222 -0.07899 0.00049817 NaN 0 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 265100 4553 3586 2729 2732 0.05037180025703947 ATRKFLEK 8 Unmodified _ATRKFLEK_ 0 0 0 PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;ENST00000462207.1_1_3:52620428-52643468:-|nuORF PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 331.0083312988281 3 331.534431 991.581465 -0.13124 -4.351E-05 0.25893 8.5845E-05 0.12769 4.2335E-05 331.53450915462975 32.526 1.1958 30.296 29.76 30.956 -2.2305 43 33 2 0 0 0 1.0248 1 6019 6019 0.35063 0 1 423310 4554 5487 2730 2733 4887 4887 0.08533753059816718 ATRKFLEK 8 Unmodified _ATRKFLEK_ 0 0 0 PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;ENST00000462207.1_1_3:52620428-52643468:-|nuORF PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 331.534431 991.581465 -0.23967 -7.9458E-05 0.28703 9.516E-05 0.047364 1.5703E-05 331.5344942382647 32.431 1.3167 30.283 29.795 31.112 -2.1483 -0.086221 0.00017852 NaN 0.35063 45 37 2 NaN NaN NaN NaN 0 NaN NaN 0 613220 4555 5487 2730 2733 0.08533753059816718 ATRKLARY 8 Unmodified _ATRKLARY_ 0 0 0 REV__ENSG00000005007|ENST00000262803|UPF1 REV__ENSG00000005007|ENST00000262803|UPF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25750732421875 2 489.795801 977.577048 0.43738 0.00021423 -0.29199 -0.00014302 0.14539 7.1211E-05 489.7955413700857 43.379 0.44962 43.379 43.12 43.569 0 21 12 2 0 0 0 1.0147 1 8085 8085 5.2307 2.9279 1 1613800 + 4556 13849 2731 2734 4888 4888 0.08736288636885092 ATRKLIEEWQ 10 Unmodified _ATRKLIEEWQ_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L;MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.236083984375 3 425.234822 1272.68264 NaN NaN NaN NaN NaN NaN NaN 30.854 1 30.854 30.354 31.354 0 0 0 0 0.22588 1 5558 5558 3.3196 0 1 4557 3249 2732 2735 4889 4889 0.05720159971860994 ATRLQDLRV 9 Unmodified _ATRLQDLRV_ 0 0 0 sp|P17150|IL10H_HCMVAViralinterleukin-10homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL111APE=1SV=2;sp|F5HC71|IL10H_HCMVMViralinterleukin-10homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL111APE=3SV=1 sp|P17150|IL10H_HCMVAViralinterleukin-10homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL111APE=1SV=2 sp|P17150|IL10H_HCMVAViralinterleukin-10homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL111APE=1SV=2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5596923828125 3 357.88049 1070.61964 -0.26683 -9.5493E-05 0.26337 9.4256E-05 -0.0034576 -1.2374E-06 357.8805283789565 21.118 0.34623 21.118 20.885 21.231 0 22 9 3 0 0 0 0.88054 1 3487 3487 4.5289 3.8312 1 1180400 4558 25723 2733 2736 4890 4890 0.08715638974467765 ATRLQDLRV 9 Unmodified _ATRLQDLRV_ 0 0 0 sp|P17150|IL10H_HCMVAViralinterleukin-10homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL111APE=1SV=2;sp|F5HC71|IL10H_HCMVMViralinterleukin-10homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL111APE=3SV=1 sp|P17150|IL10H_HCMVAViralinterleukin-10homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL111APE=1SV=2 sp|P17150|IL10H_HCMVAViralinterleukin-10homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL111APE=1SV=2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.88049 1070.61964 0.39004 0.00013959 -0.66559 -0.0002382 -0.27555 -9.8613E-05 357.8802922966653 22.541 0.34277 21.035 20.837 21.18 -1.5059 -0.041524 -0.0006496 NaN 2.2828 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1371500 4559 25723 2733 2736 0.08715638974467765 ATRLRKEE 8 Unmodified _ATRLRKEE_ 0 0 0 REV__nc|ENSG00000164051|Q96ER9-2|CCDC51 REV__nc|ENSG00000164051|Q96ER9-2|CCDC51 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.0374755859375 3 334.861207 1001.56179 -0.20998 -7.0313E-05 -1.4445 -0.00048369 -1.6544 -0.000554 334.85997952632295 50.126 0.17346 50.126 49.992 50.166 0 7 4 2 0 0 0 1.0277 1 9467 9467 0.40072 0 1 393750 + 4560 17642 2734 2737 4891 4891 0.061073770490338575 ATRLRKEE 8 Unmodified _ATRLRKEE_ 0 0 0 REV__nc|ENSG00000164051|Q96ER9-2|CCDC51 REV__nc|ENSG00000164051|Q96ER9-2|CCDC51 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 334.861207 1001.56179 -0.73494 -0.0002461 -1.6494 -0.00055231 -2.3843 -0.00079842 334.86028840389787 53.036 0.24331 49.94 49.724 49.967 -3.0954 -0.092872 -3.5443E-05 NaN 0.40072 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 385970 + 4561 17642 2734 2737 0.061073770490338575 ATRNEWYDF 9 Unmodified _ATRNEWYDF_ 0 0 0 PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant;ENSG00000134627|ENST00000299001|PIWIL4 PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 401.1811218261719 3 401.180605 1200.51999 NaN NaN NaN NaN NaN NaN NaN 51.029 1 48.147 47.647 48.647 -2.8824 0 0 0 0.23508 1 9691 9691 4.5289 0.41224 1 4562 3865 2735 2738 4892 4892 -0.07225223430145888 ATRPHMHFFR 10 Unmodified _ATRPHMHFFR_ 0 0 0 REV__nc|ENSG00000150275|Q96QU1-6|PCDH15 REV__nc|ENSG00000150275|Q96QU1-6|PCDH15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 433.88916015625 3 433.889103 1298.64548 NaN NaN NaN NaN NaN NaN NaN 38.502 1 38.502 38.002 39.002 0 0 0 0 0.22588 1 7141 7141 1.7423 0 1 + 4563 17025 2736 2739 4893 4893 0.008102099450752576 ATRQPSRNIV 10 Unmodified _ATRQPSRNIV_ 0 0 0 ENST00000361368.6_1_7:98625224-98626022:-|nuORF ENST00000361368.6_1_7:98625224-98626022:-|nuORF ENST00000361368.6_1_7:98625224-98626022:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2196960449219 3 381.219395 1140.63635 NaN NaN NaN NaN NaN NaN NaN 29.854 1 29.854 29.354 30.354 0 0 0 0 0.22588 1 5349 5349 11.518 3.6718 1 4564 9024 2737 2740 4894 4894 0.07166139860419207 ATRRRQLGL 9 Unmodified _ATRRRQLGL_ 0 0 0 ENST00000517532.5_2_8:126104142-126114260:+|nuORF ENST00000517532.5_2_8:126104142-126114260:+|nuORF ENST00000517532.5_2_8:126104142-126114260:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5502014160156 3 357.55623 1069.64686 NaN NaN NaN NaN NaN NaN NaN 18.943 1 17.632 17.132 18.132 -1.3109 0 0 0 0.23508 1 3103 3103 4.5289 0.65253 1 4565 10798 2738 2741 4895 4895 0.11482167305507573 ATRSWVWTRSQ 11 Unmodified _ATRSWVWTRSQ_ 0 0 0 ENST00000549793.5_2_15:42695178-42701567:+|nuORF ENST00000549793.5_2_15:42695178-42701567:+|nuORF ENST00000549793.5_2_15:42695178-42701567:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2369079589844 3 459.905587 1376.69493 NaN NaN NaN NaN NaN NaN NaN 20.589 1 19.205 18.705 19.705 -1.3847 0 0 0 0.23594 1 3200 3200 3.5927 1.5087 1 4566 11167 2739 2742 4896 4896 0.021651964348848196 ATRVECSY 8 Unmodified _ATRVECSY_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24176025390625 2 464.713285 927.412016 -0.00067145 -3.1203E-07 -0.14355 -6.6712E-05 -0.14423 -6.7024E-05 464.71347170614666 50.767 0.45058 47.722 47.494 47.945 -3.0453 20 12 2 0 0 0 0.31517 1 9321 9321 36.044 0 1 1276800 + 4567 17221 2740 2743 4897 4897 -0.05459311285073909 ATRVECSY 8 Unmodified _ATRVECSY_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.713285 927.412016 -0.00067145 -3.1203E-07 -0.14355 -6.6712E-05 -0.14423 -6.7024E-05 464.71347170614666 50.767 0.45058 47.722 47.494 47.945 -3.0453 0.028717 -2.6223E-06 NaN 36.044 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1276800 + 4568 17221 2740 2743 -0.05459311285073909 ATRVECSY 8 Unmodified _ATRVECSY_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.713285 927.412016 -0.065396 -3.039E-05 -0.3314 -0.00015401 -0.3968 -0.0001844 464.71341108609965 50.724 0.45375 47.672 47.434 47.888 -3.0517 -0.021288 -0.00017721 NaN 36.044 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 928460 + 4569 17221 2740 2743 -0.05459311285073909 ATSAEERR 8 Unmodified _ATSAEERR_ 0 0 0 REV__ENSG00000198455|ENST00000374888|ZXDB REV__ENSG00000198455|ENST00000374888|ZXDB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2315979003906 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 23.705 1 22.251 21.751 22.751 -1.4535 0 0 0 0.21486 1 3836 3836 11.64 0 1 + 4570 19415 2741 2744 4898 4898 -0.010580482901445976 ATSAPGLAW 9 Unmodified _ATSAPGLAW_ 0 0 0 ENSG00000111321|ENST00000228918|LTBR;ENST00000535739.5_1_12:6493425-6494510:+|nuORF;LTBR|p.S182Afs*33|1|0.33|ENSG00000111321|chr12:6386132-6386132|C/-|frameshift_variant ENSG00000111321|ENST00000228918|LTBR ENSG00000111321|ENST00000228918|LTBR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.217041015625 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 67.858 1 64.532 64.032 65.032 -3.3268 0 0 0 0.23508 1 12801 12801 7.9102 0 1 4571 2616 2742 2745 4899 4899 -0.0021045968238695423 ATSDLNIKV 9 Unmodified _ATSDLNIKV_ 0 0 0 nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB nc|ENSG00000163069|Q16585-2|SGCB nc|ENSG00000163069|Q16585-2|SGCB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2530822753906 2 480.771657 959.528761 -0.028459 -1.3682E-05 -0.10755 -5.1705E-05 -0.13601 -6.5388E-05 480.7715905766152 86.763 0.63651 83.036 82.728 83.365 -3.727 40 17 3 0 0 0 0.063365 2 16923 16923;16940 66.457 22.598 1 3939400 4572 5396 2743 2746 4900;4901 4900 0.04737750206345481 ATSDLNIKV 9 Unmodified _ATSDLNIKV_ 0 0 0 nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB nc|ENSG00000163069|Q16585-2|SGCB nc|ENSG00000163069|Q16585-2|SGCB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2531433105469 2 480.771657 959.528761 0.31791 0.00015284 -0.31779 -0.00015279 0.00011838 5.6915E-08 480.77147096268567 86.997 0.51826 83.046 82.79 83.308 -3.9503 26 14 2 0 0 0 0.14998 1 16551 16551 60.074 10.52 1 3387700 4573 5396 2743 2746 4902 4902 0.04737750206345481 ATSDLNIKV 9 Unmodified _ATSDLNIKV_ 0 0 0 nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB nc|ENSG00000163069|Q16585-2|SGCB nc|ENSG00000163069|Q16585-2|SGCB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2528381347656 2 480.771657 959.528761 0.057876 2.7825E-05 -0.069367 -3.335E-05 -0.011491 -5.5245E-06 480.7715813088006 86.85 0.59832 83.121 82.8 83.398 -3.7289 27 16 2 0 0 0 0.032798 1 16628 16628 96.367 54.411 1 3212900 4574 5396 2743 2746 4903 4903 0.04737750206345481 ATSKPSGKPAP 11 Unmodified _ATSKPSGKPAP_ 0 0 0 nc|ENSG00000084112|Q8WYL5-4|SSH1;ENSG00000084112|ENST00000326495|SSH1 nc|ENSG00000084112|Q8WYL5-4|SSH1 nc|ENSG00000084112|Q8WYL5-4|SSH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 521.11767578125 2 520.790381 1039.56621 0.15839 8.249E-05 0.15349 7.9937E-05 0.31189 0.00016243 520.790378723302 18.502 0.66037 18.502 18.335 18.996 0 26 18 2 0 0 0 0.86301 1 2977 2977 16.149 3.1066 1 1185200 4575 1665 2744 2747 4904 4904 0.048008414719333814 ATSKPSGKPAP 11 Unmodified _ATSKPSGKPAP_ 0 0 0 nc|ENSG00000084112|Q8WYL5-4|SSH1;ENSG00000084112|ENST00000326495|SSH1 nc|ENSG00000084112|Q8WYL5-4|SSH1 nc|ENSG00000084112|Q8WYL5-4|SSH1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 520.790381 1039.56621 0.014291 7.4424E-06 0.304 0.00015832 0.31829 0.00016576 520.7905173838329 20.052 0.55647 18.656 18.516 19.072 -1.3966 0.076926 7.7732E-05 NaN 16.149 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 435300 4576 1665 2744 2747 0.048008414719333814 ATSLVTMRT 9 Unmodified _ATSLVTMRT_ 0 0 0 REV__HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant REV__HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2652587890625 2 490.265684 978.516816 NaN NaN NaN NaN NaN NaN NaN 96.879 1 96.879 96.379 97.379 0 0 0 0 0.1761 1 18981 18981 26.884 5.137 1 + 4577 14618 2745 2748 4905 4905 0.02669810191491706 ATSLVTMRT 9 Unmodified _ATSLVTMRT_ 0 0 0 REV__HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant REV__HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26641845703125 2 490.265684 978.516816 NaN NaN NaN NaN NaN NaN NaN 101.22 1 96.92 96.42 97.42 -4.297 0 0 0 0.18705 1 19366 19366 25.399 0 1 + 4578 14618 2745 2748 4906 4906 0.02669810191491706 ATSNICTAQA 10 Unmodified _ATSNICTAQA_ 0 0 0 ENST00000510885.2_1_4:57459582-57460608:+|nuORF;ENSG00000178445|ENST00000321612|GLDC ENST00000510885.2_1_4:57459582-57460608:+|nuORF ENST00000510885.2_1_4:57459582-57460608:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25762939453125 2 490.229299 978.444045 NaN NaN NaN NaN NaN NaN NaN 28.419 1 26.664 26.164 27.164 -1.7552 0 0 0 0.22583 1 4796 4796 13.906 1.3745 1 4579 6579 2746 2749 4907 4907 -0.04603943601921401 ATSNPPVPPW 10 Unmodified _ATSNPPVPPW_ 0 0 0 ENST00000373840.8_1_9:123954490-123964046:-|nuORF ENST00000373840.8_1_9:123954490-123964046:-|nuORF ENST00000373840.8_1_9:123954490-123964046:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2721557617188 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 18.312 1 17.04 16.54 17.54 -1.2722 0 0 0 0.22588 1 2740 2740 7.2892 1.0834 1 4580 9207 2747 2750 4908 4908 -0.0005883007381726202 ATSNRIGC 8 Unmodified _ATSNRIGC_ 0 0 0 CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant;ENSG00000121005|ENST00000262207|CRISPLD1;ENSG00000137558|ENST00000260113|PI15 CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.1169128417969 2 411.200344 820.386136 NaN NaN NaN NaN NaN NaN NaN 67.64 1 64.313 63.813 64.813 -3.3268 0 0 0 0.21486 1 12757 12757 10.183 0 1 4581 725 2748 2751 4909 4909 -0.03124160736695103 ATSPALSFY 9 Unmodified _ATSPALSFY_ 0 0 0 REV__ENST00000273582.9_2_3:197399209-197399476:-|nuORF REV__ENST00000273582.9_2_3:197399209-197399476:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72216796875 2 478.739825 955.465098 -0.26281 -0.00012582 -0.043825 -2.0981E-05 -0.30663 -0.0001468 478.73976744681926 111.64 0.17578 107.22 107.13 107.3 -4.4231 5 4 2 0 0 0 0.8319 1 22015 22015 7.9102 3.5809 1 542430 + 4582 20282 2749 2752 4910 4910 -0.01441610230756396 ATSPSTSAAY 10 Unmodified _ATSPSTSAAY_ 0 0 0 REV__ENST00000450304.1_1_9:139444019-139444148:+|nuORF REV__ENST00000450304.1_1_9:139444019-139444148:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7239074707031 2 478.221997 954.429441 0.1666 7.9673E-05 -0.046174 -2.2082E-05 0.12043 5.7591E-05 478.22196724218344 34.899 0.62822 32.646 32.324 32.952 -2.2527 41 17 3 0 0 0 0.59928 1 6172 6172 19.257 5.7491 1 4220400 + 4583 21797 2750 2753 4911 4911 -0.04959692478416855 ATSPSTSAAY 10 Unmodified _ATSPSTSAAY_ 0 0 0 REV__ENST00000450304.1_1_9:139444019-139444148:+|nuORF REV__ENST00000450304.1_1_9:139444019-139444148:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7232971191406 2 478.221997 954.429441 0.34843 0.00016663 -0.17126 -8.1901E-05 0.17717 8.4726E-05 478.22187615007914 34.908 0.55302 32.631 32.308 32.861 -2.2766 39 15 3 0 0 0 0.57735 1 6091 6091 20.454 1.1966 1 3655000 + 4584 21797 2750 2753 4912 4912 -0.04959692478416855 ATSPTPNPVPS 11 Unmodified _ATSPTPNPVPS_ 0 0 0 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.P456Rfs*34|1|0.39|ENSG00000172534|chrX:153959879-153959879|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.273193359375 2 534.272021 1066.52949 0.375 0.00020035 0.92313 0.0004932 1.2981 0.00069356 534.2724032892129 50.988 0.69656 47.943 47.53 48.226 -3.0453 32 14 3 0 0 0 0.69278 1 9366 9366 12.241 1.4167 1 2756200 4585 6229 2751 2754 4913 4913 -0.0011145514461077255 ATSPTPNPVPS 11 Unmodified _ATSPTPNPVPS_ 0 0 0 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.P456Rfs*34|1|0.39|ENSG00000172534|chrX:153959879-153959879|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2730712890625 2 534.272021 1066.52949 -0.0062565 -3.3427E-06 1.731 0.00092484 1.7248 0.0009215 534.2729150792455 50.912 0.73573 47.861 47.47 48.206 -3.0517 35 15 4 0 0 0 0.53231 1 9353 9353 21.537 3.402 1 3074400 4586 6229 2751 2754 4914 4914 -0.0011145514461077255 ATSPTPNPVPS 11 Unmodified _ATSPTPNPVPS_ 0 0 0 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.P456Rfs*34|1|0.39|ENSG00000172534|chrX:153959879-153959879|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 534.272021 1066.52949 0.45386 0.00024249 0.74975 0.00040057 1.2036 0.00064305 534.2727387933114 47.993 0.63156 47.993 47.577 48.209 0 0.0538 -0.00062995 NaN 21.537 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2558300 4587 6229 2751 2754 -0.0011145514461077255 ATSPTPNPVPS 11 Unmodified _ATSPTPNPVPS_ 0 0 0 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.P456Rfs*34|1|0.39|ENSG00000172534|chrX:153959879-153959879|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 534.272021 1066.52949 -0.05549 -2.9647E-05 1.7454 0.00093249 1.6899 0.00090285 534.2729525009886 50.844 0.78306 47.961 47.427 48.21 -2.8824 0.02184 0.00043391 NaN 21.537 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3292600 4588 6229 2751 2754 -0.0011145514461077255 ATSQAEPPP 9 Unmodified _ATSQAEPPP_ 0 0 0 ENST00000345016.9_1_19:2101205-2101811:-|nuORF ENST00000345016.9_1_19:2101205-2101811:-|nuORF ENST00000345016.9_1_19:2101205-2101811:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.3538818359375 2 449.219257 896.423961 -0.17884 -8.0336E-05 0.17368 7.8022E-05 -0.0051522 -2.3145E-06 449.2192691197613 45.98 1.8429 43.113 42.327 44.17 -2.8665 153 52 4 0 0 0 0.60805 1 8568 8568 12.532 1.7076 1 22570000 4589 8901 2752 2755 4915 4915 -0.02839371270238189 ATSQAEPPP 9 Unmodified _ATSQAEPPP_ 0 0 0 ENST00000345016.9_1_19:2101205-2101811:-|nuORF ENST00000345016.9_1_19:2101205-2101811:-|nuORF ENST00000345016.9_1_19:2101205-2101811:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 449.219257 896.423961 0.46514 0.00020895 -0.48954 -0.00021991 -0.0244 -1.0961E-05 449.2189647360391 43.006 1.5973 43.006 42.183 43.78 0 -0.053666 -0.00037972 NaN 12.532 132 45 4 NaN NaN NaN NaN 0 NaN NaN 0 22718000 4590 8901 2752 2755 -0.02839371270238189 ATSQAEPPP 9 Unmodified _ATSQAEPPP_ 0 0 0 ENST00000345016.9_1_19:2101205-2101811:-|nuORF ENST00000345016.9_1_19:2101205-2101811:-|nuORF ENST00000345016.9_1_19:2101205-2101811:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 449.219257 896.423961 -0.13043 -5.8592E-05 0.017911 8.046E-06 -0.11252 -5.0546E-05 449.21919908537365 45.87 1.7398 43.029 42.334 44.074 -2.8409 -0.031065 7.6191E-05 NaN 12.532 143 49 4 NaN NaN NaN NaN 0 NaN NaN 0 32097000 4591 8901 2752 2755 -0.02839371270238189 ATSQAEPPP 9 Unmodified _ATSQAEPPP_ 0 0 0 ENST00000345016.9_1_19:2101205-2101811:-|nuORF ENST00000345016.9_1_19:2101205-2101811:-|nuORF ENST00000345016.9_1_19:2101205-2101811:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.219257 896.423961 -0.061206 -2.7495E-05 -0.029627 -1.3309E-05 -0.090833 -4.0804E-05 449.2191565787369 45.956 1.633 43.091 42.378 44.011 -2.8653 0.031266 3.3482E-05 NaN 12.532 143 46 4 NaN NaN NaN NaN 0 NaN NaN 0 25677000 4592 8901 2752 2755 -0.02839371270238189 ATSSRWMKQ 9 Unmodified _ATSSRWMKQ_ 0 0 0 REV__NETO2|p.R426W|1|0.41|ENSG00000171208|chr16:47083523-47083523|G/A|missense_variant REV__NETO2|p.R426W|1|0.41|ENSG00000171208|chr16:47083523-47083523|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7770385742188 2 547.774208 1093.53386 NaN NaN NaN NaN NaN NaN NaN 26.066 1 24.335 23.835 24.835 -1.7312 0 0 0 0.23508 1 4588 4588 10.824 1.4408 1 + 4593 24354 2753 2756 4916 4916 -0.009162692026848163 ATSSSSCPAF 10 Unmodified _ATSSSSCPAF_ 0 0 0 ENSG00000179772|ENST00000375978|FOXS1 ENSG00000179772|ENST00000375978|FOXS1 ENSG00000179772|ENST00000375978|FOXS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7234802246094 2 479.20275 956.390947 -0.0083181 -3.9861E-06 1.4329 0.00068666 1.4246 0.00068267 479.20479638726795 46.207 0.10374 43.342 43.275 43.378 -2.8653 4 2 2 0 0 0 0.87854 1 8395 8395 13.906 9.9617 1 205860 4594 6642 2754 2757 4917 4917 -0.08899321384581071 ATSTATLY 8 Unmodified _ATSTATLY_ 0 0 0 nc|ENSG00000155657|Q8WZ42-6|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.M4154Nfs*4|1|0.21|ENSG00000155657|chr2:178739821-178739822|-/T|frameshift_variant;TTN|p.T4116Sfs*25|1|0.04|ENSG00000155657|chr2:178739937-178739938|-/CTATTATATATGAGGAA|frameshift_variant;TTN|p.P4036Qfs*14|1|0.19|ENSG00000155657|chr2:178740175-178740175|G/-|frameshift_variant;TTN|p.I3592Lfs*36|1|0.25|ENSG00000155657|chr2:178741508-178741508|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant nc|ENSG00000155657|Q8WZ42-6|TTN;ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.24896240234375 2 414.210901 826.407249 NaN NaN NaN NaN NaN NaN NaN 65.228 1 62.181 61.681 62.681 -3.047 0 0 0 0.21323 1 12621 12621 14.582 4.3983 1 4595 5053;26536;12390 2755 2758 4918 4918 -0.012898721561782622 ATSTINLYFG 10 Unmodified _ATSTINLYFG_ 0 0 0 ENSG00000274252|ENST00000619998|GGTLC3;nc|ENSG00000197421|A6NGU5|GGT3P;nc|ENSG00000133475|P36268|GGT2P;nc|ENSG00000133475|P36268-3|GGT2P;nc|ENSG00000100031|P19440-3|GGT1;ENSG00000149435|ENST00000335694|GGTLC1;ENSG00000100031|ENST00000400382|GGT1;GGTLC1|p.S94Hfs*58|1|0.35|ENSG00000149435|chr20:23986101-23986101|G/-|frameshift_variant;GGTLC1|p.G130Afs*22|1|0.4|ENSG00000149435|chr20:23985890-23985890|C/-|frameshift_variant;ENSG00000100121|ENST00000448514|GGTLC2 ENSG00000274252|ENST00000619998|GGTLC3 ENSG00000274252|ENST00000619998|GGTLC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7796020507812 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 30.631 1 28.514 28.014 29.014 -2.1167 0 0 0 0.22588 1 5539 5539 10.824 0.75 1 4596 8016 2756 2759 4919 4919 -2.2671392343909247E-05 ATSTPAALSP 10 Unmodified _ATSTPAALSP_ 0 0 0 HIRA|p.R605Efs*31|1|0.26|ENSG00000100084|chr22:19361894-19361894|G/-|frameshift_variant;nc|ENSG00000100084|P54198-2|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF;ENSG00000100084|ENST00000263208|HIRA HIRA|p.R605Efs*31|1|0.26|ENSG00000100084|chr22:19361894-19361894|G/-|frameshift_variant HIRA|p.R605Efs*31|1|0.26|ENSG00000100084|chr22:19361894-19361894|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23809814453125 2 458.242732 914.470912 0.78379 0.00035917 -0.14744 -6.7562E-05 0.63635 0.0002916 458.2426726925063 27.776 0.49097 25.993 25.699 26.19 -1.7821 17 13 2 0 0 0 0.63858 1 4916 4916 17.113 4.0704 1 738580 4597 1927 2757 2760 4920 4920 0.010254882809135779 ATSTYFQLL 9 Unmodified _ATSTYFQLL_ 0 0 0 REV__TRAK1|p.A181T|1|0.38|ENSG00000182606|chr3:42188105-42188105|G/A|missense_variant REV__TRAK1|p.A181T|1|0.38|ENSG00000182606|chr3:42188105-42188105|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.272705078125 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 96.633 1 92.398 91.898 92.898 -4.2348 0 0 0 0.19687 1 18452 18452 10.899 10.024 1 + 4598 25477 2758 2761 4921 4921 0.01394634349117041 ATTAAIAT 8 Unmodified _ATTAAIAT_ 0 0 0 REV__ENSG00000099381|ENST00000262519|SETD1A REV__ENSG00000099381|ENST00000262519|SETD1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013244628906 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 57.964 1 57.964 57.464 58.464 0 0 0 0 0.21486 1 11089 11089 5.2307 0 1 + 4599 14637 2759 2762 4922 4922 0.015661625349594033 ATTAAIAT 8 Unmodified _ATTAAIAT_ 0 0 0 REV__ENSG00000099381|ENST00000262519|SETD1A REV__ENSG00000099381|ENST00000262519|SETD1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201171875 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 64.694 1 64.694 64.194 65.194 0 0 0 0 0.21486 1 12458 12458 5.2307 0 1 + 4600 14637 2759 2762 4923 4923 0.015661625349594033 ATTAAIAT 8 Unmodified _ATTAAIAT_ 0 0 0 REV__ENSG00000099381|ENST00000262519|SETD1A REV__ENSG00000099381|ENST00000262519|SETD1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20159912109375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 67.625 1 64.298 63.798 64.798 -3.3268 0 0 0 0.21486 1 12754 12754 5.2307 0 1 + 4601 14637 2759 2762 4924 4924 0.015661625349594033 ATTAAPEPGT 10 Unmodified _ATTAAPEPGT_ 0 0 0 ENST00000507735.5_1_4:169799281-169812093:+|nuORF ENST00000507735.5_1_4:169799281-169812093:+|nuORF ENST00000507735.5_1_4:169799281-169812093:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2256164550781 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 39.097 1 36.655 36.155 37.155 -2.4419 0 0 0 0.22518 1 6973 6973 22.736 1.1993 1 4602 10704 2760 2763 4925 4925 -0.026113886158100286 ATTATTTLMMT 11 Unmodified _ATTATTTLMMT_ 0 0 0 ENSG00000125788|ENST00000382398|DEFB126 ENSG00000125788|ENST00000382398|DEFB126 ENSG00000125788|ENST00000382398|DEFB126 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2053527832031 3 381.519242 1141.5359 NaN NaN NaN NaN NaN NaN NaN 25.515 1 25.515 25.015 26.015 0 0 0 0 0.23159 1 4431 4431 7.0371 0.84524 1 4603 3386 2761 2764 4926 4926 -0.02921021299766835 ATTDCSMSE 9 Unmodified _ATTDCSMSE_ 0 0 0 REV__ENST00000269919.10_1_19:18474522-18474831:+|nuORF REV__ENST00000269919.10_1_19:18474522-18474831:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.13409423828125 3 315.449376 943.326297 -0.733 -0.00023123 1.1432 0.00036062 0.41019 0.00012939 315.4497003542695 53.156 0.85398 50.061 49.76 50.614 -3.0954 38 24 2 0 0 0 0.88413 1 9875 9875 1.0715 0 1 1281900 + 4604 20266 2762 2765 4927 4927 -0.14763264252894714 ATTDCSMSE 9 Unmodified _ATTDCSMSE_ 0 0 0 REV__ENST00000269919.10_1_19:18474522-18474831:+|nuORF REV__ENST00000269919.10_1_19:18474522-18474831:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 315.449376 943.326297 -0.48081 -0.00015167 0.92537 0.00029191 0.44457 0.00014024 315.4496687395319 52.907 0.59378 50.024 49.689 50.283 -2.8837 -0.057641 7.9199E-05 NaN 1.0715 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1433600 + 4605 20266 2762 2765 -0.14763264252894714 ATTDCSMSE 9 Unmodified _ATTDCSMSE_ 0 0 0 REV__ENST00000269919.10_1_19:18474522-18474831:+|nuORF REV__ENST00000269919.10_1_19:18474522-18474831:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 315.449376 943.326297 0.054996 1.7349E-05 0.46748 0.00014747 0.52248 0.00016482 315.44951372398805 53.247 0.95142 50.16 49.689 50.64 -3.0876 0.078305 -0.00035412 NaN 1.0715 40 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1833900 + 4606 20266 2762 2765 -0.14763264252894714 ATTERRFY 8 Unmodified _ATTERRFY_ 0 0 0 nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF;ALS2|p.P1016Lfs*29|1|0.35|ENSG00000003393|chr2:201726799-201726799|G/-|frameshift_variant;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENSG00000003393|ENST00000264276|ALS2 nc|ENSG00000003393|Q96Q42-3|ALS2 nc|ENSG00000003393|Q96Q42-3|ALS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2820434570312 2 522.267073 1042.51959 0.36038 0.00018821 -0.5917 -0.00030903 -0.23132 -0.00012081 522.2668709155978 98.572 0.73308 98.572 98.123 98.856 0 31 20 2 0 0 0 0.69031 1 19272 19272 15.847 1.0089 1 1788400 4607 127 2763 2766 4928 4928 3.401640651645721E-05 ATTGCSTIG 9 Unmodified _ATTGCSTIG_ 0 0 0 nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;ADGRE2|p.I749Rfs*49|1|0.1|ENSG00000127507|chr19:14743716-14743722|TGCAAGA/-|frameshift_variant;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2 nc|ENSG00000127507|Q9UHX3-5|ADGRE2 nc|ENSG00000127507|Q9UHX3-5|ADGRE2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3000183105469 2 405.686736 809.358918 -0.23968 -9.7235E-05 1.0489 0.00042553 0.80923 0.0003283 405.68709574719503 44.056 1.1826 41.266 40.841 42.024 -2.79 91 33 4 0 0 0 0.87258 1 8298 8298 4.3292 0 1 14640000 4608 76 2764 2767 4929 4929 -0.0533868906771886 ATTGCSTIG 9 Unmodified _ATTGCSTIG_ 0 0 0 nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;ADGRE2|p.I749Rfs*49|1|0.1|ENSG00000127507|chr19:14743716-14743722|TGCAAGA/-|frameshift_variant;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2 nc|ENSG00000127507|Q9UHX3-5|ADGRE2 nc|ENSG00000127507|Q9UHX3-5|ADGRE2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 405.686736 809.358918 -0.053574 -2.1734E-05 0.84633 0.00034335 0.79276 0.00032161 405.6870130702059 44.12 1.2497 41.354 40.905 42.155 -2.7661 -0.043316 -0.00010972 NaN 4.3292 102 35 4 NaN NaN NaN NaN 0 NaN NaN 0 16403000 4609 76 2764 2767 -0.0533868906771886 ATTGDATLPGY 11 Unmodified _ATTGDATLPGY_ 0 0 0 REV__TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant REV__TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.274658203125 2 533.756204 1065.49785 0.49674 0.00026514 -1.3232 -0.00070627 -0.82647 -0.00044113 533.7556319182366 62.602 0.52549 59.186 58.769 59.295 -3.4158 21 14 2 0 0 0 0.68099 1 11621 11621 13.042 3.6593 1 641270 + 4610 18029 2765 2768 4930 4930 -0.03227447898552782 ATTHSKASP 9 Unmodified _ATTHSKASP_ 0 0 0 ENSG00000249693|ENST00000512175|THEGL ENSG00000249693|ENST00000512175|THEGL ENSG00000249693|ENST00000512175|THEGL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.1134033203125 2 450.232699 898.450845 0.64281 0.00028941 -0.74721 -0.00033642 -0.1044 -4.7004E-05 450.2322696762784 23.124 0.31889 21.571 21.372 21.691 -1.5532 14 8 2 0 0 0 0.87258 1 3952 3952 7.9102 0 1 490410 4611 7898 2766 2769 4931 4931 -0.0024426265905503897 ATTHSKASP 9 Unmodified _ATTHSKASP_ 0 0 0 ENSG00000249693|ENST00000512175|THEGL ENSG00000249693|ENST00000512175|THEGL ENSG00000249693|ENST00000512175|THEGL MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 450.232699 898.450845 0.22928 0.00010323 -0.06174 -2.7797E-05 0.16754 7.5433E-05 450.23266658227686 21.626 0.44941 21.626 21.46 21.909 0 0.058732 2.4554E-05 NaN 7.9102 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1062100 4612 7898 2766 2769 -0.0024426265905503897 ATTHSKASP 9 Unmodified _ATTHSKASP_ 0 0 0 ENSG00000249693|ENST00000512175|THEGL ENSG00000249693|ENST00000512175|THEGL ENSG00000249693|ENST00000512175|THEGL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 450.232699 898.450845 -0.12661 -5.7005E-05 0.19811 8.9197E-05 0.071499 3.2191E-05 450.2328157131768 23.04 0.24163 21.587 21.405 21.647 -1.4535 0.020007 0.00025854 NaN 7.9102 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 524740 4613 7898 2766 2769 -0.0024426265905503897 ATTHSKASP 9 Unmodified _ATTHSKASP_ 0 0 0 ENSG00000249693|ENST00000512175|THEGL ENSG00000249693|ENST00000512175|THEGL ENSG00000249693|ENST00000512175|THEGL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 450.232699 898.450845 -0.51486 -0.00023181 0.63488 0.00028584 0.12002 5.4037E-05 450.2329943554567 23.272 0.30336 21.484 21.324 21.628 -1.7886 -0.083041 0.00065184 NaN 7.9102 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 539370 4614 7898 2766 2769 -0.0024426265905503897 ATTLLSSGDP 10 Unmodified _ATTLLSSGDP_ 0 0 0 REV__nc|ENSG00000135111|O15119-3|TBX3 REV__nc|ENSG00000135111|O15119-3|TBX3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2448425292969 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 25.379 1 23.526 23.026 24.026 -1.8534 0 0 0 0.22552 1 4166 4166 18.146 1.9972 1 + 4615 16247 2767 2770 4932 4932 -0.005428329272831434 ATTRQRLFQ 9 Unmodified _ATTRQRLFQ_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21490478515625 3 374.21224 1119.61489 -0.18255 -6.8311E-05 -0.50889 -0.00019043 -0.69144 -0.00025875 374.21212890439574 20.848 0.24631 20.848 20.705 20.951 0 15 6 4 0 0 0 0.78323 1 3469 3469 2.4985 0.21571 1 387020 4616 2220 2768 2771 4933 4933 0.05986754831678809 ATTRQRLFQ 9 Unmodified _ATTRQRLFQ_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 374.21224 1119.61489 -0.12624 -4.7242E-05 -0.18307 -6.8507E-05 -0.30931 -0.00011575 374.2120001910378 22.284 0.2808 20.83 20.595 20.876 -1.4535 -0.0086738 0.0002078 NaN 2.4985 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 489200 4617 2220 2768 2771 0.05986754831678809 ATTRVFQKQ 9 Unmodified _ATTRVFQKQ_ 0 0 0 ENST00000367505.6_1_6:146271401-146271443:-|nuORF ENST00000367505.6_1_6:146271401-146271443:-|nuORF ENST00000367505.6_1_6:146271401-146271443:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017517089844 3 360.204974 1077.59309 -0.75647 -0.00027248 0.88631 0.00031925 0.12984 4.6769E-05 360.20528624877977 50.166 0.66856 47.159 46.74 47.408 -3.0068 34 19 2 0 0 0 0.75263 1 9144 9144 3.8763 0.55669 1 2702900 4618 9071 2769 2772 4934 4934 0.057399500831252226 ATTSKEDP 8 Unmodified _ATTSKEDP_ 0 0 0 nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:182910742-182941939:-|nuORF nc|ENSG00000053524|Q86YR7-4|MCF2L2 nc|ENSG00000053524|Q86YR7-4|MCF2L2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.254638671875 2 424.70344 847.392327 0.25342 0.00010763 0.046036 1.9552E-05 0.29946 0.00012718 424.7034046406275 31.631 1.0198 29.605 29.197 30.216 -2.0264 67 28 3 0 0 0 1.0147 1 5579 5579 2.3027 0 1 24059000 4619 1256 2770 2773 4935 4935 -0.03747364024184208 ATTTKFIVRS 10 Unmodified _ATTTKFIVRS_ 0 0 0 nc|ENSG00000170054|Q86WD7-5|SERPINA9;nc|ENSG00000170054|Q86WD7-6|SERPINA9;ENSG00000170054|ENST00000674397|SERPINA9;nc|ENSG00000170054|Q86WD7-7|SERPINA9;SERPINA9|p.A368V|1|0.07|ENSG00000170054|chr14:94463244-94463244|G/A|missense_variant;nc|ENSG00000170054|Q86WD7-2|SERPINA9 nc|ENSG00000170054|Q86WD7-5|SERPINA9 nc|ENSG00000170054|Q86WD7-5|SERPINA9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2208251953125 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 85.826 1 82.097 81.597 82.597 -3.7289 0 0 0 0.22588 1 16402 16402 3.5871 0.85186 1 4620 6035 2771 2774 4936 4936 0.08329389914433705 ATTTTWESVA 10 Unmodified _ATTTTWESVA_ 0 0 0 REV__ENSG00000204345|ENST00000375352|CD300LD REV__ENSG00000204345|ENST00000375352|CD300LD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2701416015625 2 533.756204 1065.49785 0.40466 0.00021599 -0.39182 -0.00020914 0.01284 6.8537E-06 533.7560727810766 31.485 0.70025 29.254 28.783 29.483 -2.2305 30 19 2 0 0 0 0.59928 1 5705 5705 19.257 2.1441 1 1129600 + 4621 19526 2772 2775 4937 4937 -0.03227447898552782 ATTVTNELSK 10 Unmodified _ATTVTNELSK_ 0 0 0 REV__TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant REV__TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2872314453125 2 532.285128 1062.5557 -0.24064 -0.00012809 0.59042 0.00031427 0.34977 0.00018618 532.2853563986997 35.343 0.42653 32.949 32.774 33.201 -2.3938 28 11 3 0 0 0 0.65108 1 6517 6517 16.149 2.2431 1 2782600 + 4622 18782 2773 2776 4938 4938 0.02692814026841006 ATTVTNELSK 10 Unmodified _ATTVTNELSK_ 0 0 0 REV__TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant REV__TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2871704101562 2 532.285128 1062.5557 0.52775 0.00028091 -0.30416 -0.0001619 0.22358 0.00011901 532.2849657343077 35.342 0.45511 33.089 32.846 33.301 -2.2527 26 12 3 0 0 0 0.69696 1 6230 6230 11.495 11.495 1 2520500 + 4623 18782 2773 2776 4939 4939 0.02692814026841006 ATTVTNELSK 10 Unmodified _ATTVTNELSK_ 0 0 0 REV__TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant REV__TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.285128 1062.5557 0.091908 4.8921E-05 0.37549 0.00019987 0.4674 0.00024879 532.2852484161506 33.29 0.44849 33.29 33.059 33.508 0 0.19703 0.00023764 NaN 16.149 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2013100 + 4624 18782 2773 2776 0.02692814026841006 ATTVTNELSK 10 Unmodified _ATTVTNELSK_ 0 0 0 REV__TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant REV__TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.285128 1062.5557 0.52775 0.00028091 -0.30416 -0.0001619 0.22358 0.00011901 532.2849657343077 35.342 0.45511 33.089 32.846 33.301 -2.2527 -0.0032493 -0.00048589 NaN 16.149 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2520500 + 4625 18782 2773 2776 0.02692814026841006 ATTVTNELSK 10 Unmodified _ATTVTNELSK_ 0 0 0 REV__TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant REV__TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.285128 1062.5557 0.37346 0.00019879 -0.017946 -9.5525E-06 0.35551 0.00018923 532.2850776870507 35.319 0.45333 33.042 32.828 33.281 -2.2766 -0.050148 -0.00018119 NaN 16.149 24 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2084700 + 4626 18782 2773 2776 0.02692814026841006 ATTWDDPEL 9 Unmodified _ATTWDDPEL_ 0 0 0 REV__ENSG00000205363|ENST00000569673|INSYN1 REV__ENSG00000205363|ENST00000569673|INSYN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.685791015625 2 524.235104 1046.45566 0.28817 0.00015107 -0.061878 -3.2439E-05 0.22629 0.00011863 524.2350168313384 37.301 0.45716 34.963 34.663 35.12 -2.3375 22 12 2 0 0 0 0.77732 1 6618 6618 7.9102 3.1541 1 1131600 + 4627 19591 2774 2777 4940 4940 -0.0657142330694569 ATTWEERCS 9 Unmodified _ATTWEERCS_ 0 0 0 REV__ENST00000557552.1_1_14:105241736-105242162:-|nuORF REV__ENST00000557552.1_1_14:105241736-105242162:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2632446289062 2 541.732206 1081.44986 NaN NaN NaN NaN NaN NaN NaN 13.549 1 13.549 13.049 14.049 0 0 0 0 0.23508 1 1962 1962 7.2892 1.9923 1 + 4628 23012 2775 2778 4941 4941 -0.08760845090273506 ATTYFHLR 8 Unmodified _ATTYFHLR_ 0 0 0 ENST00000301905.8_1_8:27690647-27695270:-|nuORF ENST00000301905.8_1_8:27690647-27695270:-|nuORF ENST00000301905.8_1_8:27690647-27695270:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0504455566406 3 336.846898 1007.51886 -0.31211 -0.00010513 0.21148 7.1236E-05 -0.10063 -3.3895E-05 336.8468626401712 34.168 0.14063 31.952 31.879 32.02 -2.2158 5 3 2 0 0 0 1.0254 1 5990 5990 0.35063 0 1 257680 4629 8566 2776 2779 4942 4942 0.015406069916252818 ATVAPSSSPV 10 Unmodified _ATVAPSSSPV_ 0 0 0 MYPN|p.A734S|1|0.45|ENSG00000138347|chr10:68174292-68174292|G/T|missense_variant;MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant;nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN MYPN|p.A734S|1|0.45|ENSG00000138347|chr10:68174292-68174292|G/T|missense_variant MYPN|p.A734S|1|0.45|ENSG00000138347|chr10:68174292-68174292|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2259216308594 2 458.242732 914.470912 0.28314 0.00012975 0.26822 0.00012291 0.55135 0.00025265 458.24283143633727 30.194 1.8549 28.301 27.651 29.506 -1.8928 165 52 5 0 0 0 0.18836 1 5249 5249 1.914 0.22208 1 75773000 4630 4166 2777 2780 4943 4943 0.010254882809135779 ATVARMKP 8 Unmodified _ATVARMKP_ 0 0 0 nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;ENST00000438023.5_2_9:6982745-7014111:+|nuORF nc|ENSG00000293552|Q9H3R0-2|KDM4C nc|ENSG00000293552|Q9H3R0-2|KDM4C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.52813720703125 2 437.25238 872.490207 NaN NaN NaN NaN NaN NaN NaN 31.323 1 29.175 28.675 29.675 -2.1483 0 0 0 0.21486 1 5394 5394 5.2307 0.47466 1 4631 2412 2778 2781 4944 4944 0.04886166090830102 ATVEFAVH 8 Unmodified _ATVEFAVH_ 0 0 0 ENSG00000101435|ENST00000376979|CST9L ENSG00000101435|ENST00000376979|CST9L ENSG00000101435|ENST00000376979|CST9L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2276916503906 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 59.395 1 59.395 58.895 59.895 0 0 0 0 0.21452 1 11379 11379 13.508 0 1 4632 2067 2779 2782 4945 4945 -0.0021045968237558554 ATVEVKDAP 9 Unmodified _ATVEVKDAP_ 0 0 0 REV__ENST00000467928.2_2_10:102894001-102896667:+|nuORF REV__ENST00000467928.2_2_10:102894001-102896667:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2528991699219 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 46.462 1 43.597 43.097 44.097 -2.8653 0 0 0 0.22251 1 8446 8446 16.942 3.4344 1 + 4633 21991 2780 2783 4946 4946 0.01945774797957256 ATVKQHTIT 9 Unmodified _ATVKQHTIT_ 0 0 0 REV__nc|ENSG00000145555|Q9HD67-2|MYO10 REV__nc|ENSG00000145555|Q9HD67-2|MYO10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.99395751953125 3 333.525825 997.555644 -0.40027 -0.0001335 0.10047 3.3511E-05 -0.2998 -9.9991E-05 333.52591283087315 31.751 0.41461 31.751 31.53 31.945 0 22 11 3 0 0 0 0.88284 1 5723 5723 2.4985 1.3051 1 961760 + 4634 16840 2781 2784 4947 4947 0.05676858817525954 ATVLDKGRQ 9 Unmodified _ATVLDKGRQ_ 0 0 0 REV__ENSG00000072840|ENST00000264956|EVC REV__ENSG00000072840|ENST00000264956|EVC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.012939453125 3 329.857574 986.550893 -0.48228 -0.00015908 0.40069 0.00013217 -0.081588 -2.6912E-05 329.8576918180736 19.042 0.45259 19.042 18.719 19.172 0 21 12 2 0 0 0 0.8799 1 3079 3079 2.4985 0 1 2908500 + 4635 14295 2782 2785 4948 4948 0.05707974674771776 ATVLDKGRQ 9 Unmodified _ATVLDKGRQ_ 0 0 0 REV__ENSG00000072840|ENST00000264956|EVC REV__ENSG00000072840|ENST00000264956|EVC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 329.857574 986.550893 0.031589 1.042E-05 -0.0078396 -2.586E-06 0.023749 7.8338E-06 329.857526083824 20.559 0.31892 19.162 18.93 19.249 -1.3966 0.08837 -0.0001256 NaN 2.4985 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2182100 + 4636 14295 2782 2785 0.05707974674771776 ATVLDKGRQ 9 Unmodified _ATVLDKGRQ_ 0 0 0 REV__ENSG00000072840|ENST00000264956|EVC REV__ENSG00000072840|ENST00000264956|EVC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 329.857574 986.550893 -0.24667 -8.1366E-05 -0.075087 -2.4768E-05 -0.32176 -0.00010613 329.8575709403741 20.403 0.32085 19.018 18.811 19.132 -1.3847 -0.055916 -0.00019214 NaN 2.4985 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1765900 + 4637 14295 2782 2785 0.05707974674771776 ATVLILLIPVK 11 Unmodified _ATVLILLIPVK_ 0 0 0 REV__ENSG00000178789|ENST00000392621|CD300LB REV__ENSG00000178789|ENST00000392621|CD300LB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2589721679688 2 590.407392 1178.80023 0.34579 0.00020416 -0.33101 -0.00019543 0.014775 8.7231E-06 590.9077004992869 126.46 0.14733 126.46 126.35 126.5 0 5 3 2 0 0 0 0.89055 1 24949 24949 0.00056442 0 1 923460 + 4638 18620 2783 2786 4949 4949 0.21798344578587603 ATVMAFPPGA 10 Unmodified _ATVMAFPPGA_ 0 0 0 nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24383544921875 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 71.576 1 68.327 67.827 68.827 -3.2492 0 0 0 2.8426 1 13939 13939 0.20733 0 1 4639 12354 2784 2787 4950 4950 -0.007929598659302428 ATVNHKTFY 9 Unmodified _ATVNHKTFY_ 0 0 0 REV__CDC14A|p.K217T|1|0.08|ENSG00000079335|chr1:100462693-100462693|A/C|missense_variant REV__CDC14A|p.K217T|1|0.08|ENSG00000079335|chr1:100462693-100462693|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2799072265625 2 540.777274 1079.53999 0.071421 3.8623E-05 0.4064 0.00021977 0.47782 0.0002584 540.7774432722216 45.954 0.41008 43.088 42.83 43.24 -2.8653 18 11 2 0 0 0 0.48644 1 8331 8331 20.454 7.9221 1 940540 + 4640 13337 2785 2788 4951 4951 0.003405723004561878 ATVQPPPQAA 10 Unmodified _ATVQPPPQAA_ 0 0 0 nc|ENSG00000115977|Q2M2I8-2|AAK1;AAK1|p.R760Gfs*14|1|0.28|ENSG00000115977|chr2:69496072-69496072|T/-|frameshift_variant;ENSG00000115977|ENST00000409085|AAK1 nc|ENSG00000115977|Q2M2I8-2|AAK1 nc|ENSG00000115977|Q2M2I8-2|AAK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2645263671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 60.994 1 57.77 57.27 58.27 -3.2237 0 0 0 0.22559 1 11413 11413 17.113 3.605 1 4641 12293 2786 2789 4952 4952 0.023328834091330464 ATVRDVGQAAG 11 Unmodified _ATVRDVGQAAG_ 0 0 0 REV__tr|U7SFQ8|U7SFQ8_FUSNUUridylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrHPE=3SV=1 REV__tr|U7SFQ8|U7SFQ8_FUSNUUridylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrHPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2684936523438 2 522.775262 1043.53597 -0.22887 -0.00011965 0.065951 3.4478E-05 -0.16292 -8.5171E-05 522.7753935769443 18.574 0.75762 17.263 17.002 17.76 -1.3109 61 19 6 0 0 0 0.76088 1 3058 3058 7.609 0 1 185370000 + 4642 24854 2787 2790 4953 4953 0.015944828067631533 ATVRDVVVGR 10 Unmodified _ATVRDVVVGR_ 0 0 0 ATL3|p.A529V|1|0.08|ENSG00000184743|chr11:63629359-63629359|G/A|missense_variant ATL3|p.A529V|1|0.08|ENSG00000184743|chr11:63629359-63629359|G/A|missense_variant ATL3|p.A529V|1|0.08|ENSG00000184743|chr11:63629359-63629359|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5599060058594 3 357.88049 1070.61964 -1.2048 -0.00043116 1.1081 0.00039657 -0.096659 -3.4592E-05 357.88088152658946 22.786 0.37374 20.997 20.782 21.156 -1.7886 18 10 2 0 0 0 0.91149 1 3642 3642 7.9454 2.8979 1 1001600 4643 257 2788 2791 4954 4954 0.08715638974490503 ATVSSEKKL 9 Unmodified _ATVSSEKKL_ 0 0 0 ENSG00000196227|ENST00000360816|FAM217B ENSG00000196227|ENST00000360816|FAM217B ENSG00000196227|ENST00000360816|FAM217B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7814025878906 2 481.779482 961.544411 NaN NaN NaN NaN NaN NaN NaN 54.268 1 51.384 50.884 51.884 -2.8837 0 0 0 0.21844 1 10353 10353 18.146 5.6148 1 4644 7248 2789 2792 4955 4955 0.06210036723382473 ATVVFVGVK 9 Unmodified _ATVVFVGVK_ 0 0 0 SLC12A5|p.E1019Kfs*40|1|0.54|ENSG00000124140|chr20:46056436-46056436|G/-|frameshift_variant;ENSG00000124140|ENST00000243964|SLC12A5;nc|ENSG00000124140|Q9H2X9|SLC12A5;ENST00000372315.4_1_20:44657854-44669254:+|nuORF SLC12A5|p.E1019Kfs*40|1|0.54|ENSG00000124140|chr20:46056436-46056436|G/-|frameshift_variant SLC12A5|p.E1019Kfs*40|1|0.54|ENSG00000124140|chr20:46056436-46056436|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22772216796875 2 460.284203 918.553853 -0.05133 -2.3626E-05 0.39294 0.00018086 0.34161 0.00015724 460.28432672822294 24.15 0.35076 22.616 22.434 22.785 -1.5342 15 9 2 0 0 0 0.87511 1 3911 3911 7.2892 4.9865 1 476030 4645 25668 2790 2793 4956 4956 0.09131849799575775 ATVVLFQVGFY 11 Unmodified _ATVVLFQVGFY_ 0 0 0 REV__ENSG00000175274|ENST00000525680|TP53I11 REV__ENSG00000175274|ENST00000525680|TP53I11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.25726318359375 3 415.228897 1242.66486 NaN NaN NaN NaN NaN NaN NaN 30.424 1 28.308 27.808 28.808 -2.1167 0 0 0 0.23634 1 5495 5495 1.3296 0 1 + 4646 18467 2791 2794 4957 4957 0.053234447170098065 ATVVPGKC 8 Unmodified _ATVVPGKC_ 0 0 0 ENST00000555210.1_1_15:92669436-92694191:+|nuORF;nc|ENSG00000176463|Q9UIG8-4|SLCO3A1;ENST00000555549.5_1_15:92641439-92706362:+|nuORF;nc|ENSG00000176463|Q9UIG8-3|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF;nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1 ENST00000555210.1_1_15:92669436-92694191:+|nuORF ENST00000555210.1_1_15:92669436-92694191:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7127685546875 2 387.712556 773.41056 NaN NaN NaN NaN NaN NaN NaN 130.83 1 130.83 130.33 131.33 0 0 0 0 0.23899 1 25864 25864 1.3295 0 1 4647 6470 2792 2795 4958 4958 0.014790994168379257 ATWARQAPPP 10 Unmodified _ATWARQAPPP_ 0 0 0 ENST00000420110.1_1_6:30227739-30228176:+|nuORF ENST00000420110.1_1_6:30227739-30228176:+|nuORF ENST00000420110.1_1_6:30227739-30228176:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7931518554688 2 547.790715 1093.56688 NaN NaN NaN NaN NaN NaN NaN 26.222 1 24.3 23.8 24.8 -1.9222 0 0 0 0.22588 1 4335 4335 6.2058 0.44535 1 4648 9654 2793 2796 4959 4959 0.02383680911657393 ATWEKQIYTY 10 Unmodified _ATWEKQIYTY_ 0 0 0 ENST00000545978.1_1_12:20998105-20998150:+|nuORF ENST00000545978.1_1_12:20998105-20998150:+|nuORF ENST00000545978.1_1_12:20998105-20998150:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 434.8742370605469 3 434.883677 1301.6292 NaN NaN NaN NaN NaN NaN NaN 24.271 1 22.737 22.237 23.237 -1.5342 0 0 0 0.22588 1 3946 3946 1.7423 0.41263 1 4649 11124 2794 2797 4960 4960 -0.009546375306626942 ATWESNYF 8 Unmodified _ATWESNYF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ARHGAP35|p.P1250S|1|0.22|ENSG00000160007|chr19:46937330-46937330|C/T|missense_variant ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.5088195800781 3 339.815264 1016.42396 -0.69735 -0.00023697 0.060897 2.0694E-05 -0.63646 -0.00021628 339.81524505317293 42.783 0.40925 40.177 40.004 40.413 -2.606 18 11 2 0 0 0 0.89225 1 7732 7732 0.25148 0 1 788090 4650 5226 2795 2798 4961 4961 -0.08359371270239535 ATWPHPSW 8 Unmodified _ATWPHPSW_ 0 0 0 ENST00000397420.7_1_11:838351-838822:+|nuORF ENST00000397420.7_1_11:838351-838822:+|nuORF ENST00000397420.7_1_11:838351-838822:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 328.0205383300781 3 327.824093 980.450451 -0.76055 -0.00024933 0.98239 0.00032205 0.22185 7.2727E-05 327.8244116097334 62.044 0.50845 62.044 61.631 62.14 0 23 14 2 0 0 0 1.0277 1 11881 11881 1.6526 0 1 2218000 4651 9465 2796 2799 4962 4962 -0.04055637588248828 ATWPHPSW 8 Unmodified _ATWPHPSW_ 0 0 0 ENST00000397420.7_1_11:838351-838822:+|nuORF ENST00000397420.7_1_11:838351-838822:+|nuORF ENST00000397420.7_1_11:838351-838822:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 327.824093 980.450451 -0.25542 -8.3733E-05 0.43644 0.00014308 0.18102 5.9343E-05 327.8242000566115 64.834 0.75392 61.787 61.489 62.243 -3.047 -0.12314 -0.00010476 NaN 1.6526 45 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3362300 4652 9465 2796 2799 -0.04055637588248828 ATWPHPSW 8 Unmodified _ATWPHPSW_ 0 0 0 ENST00000397420.7_1_11:838351-838822:+|nuORF ENST00000397420.7_1_11:838351-838822:+|nuORF ENST00000397420.7_1_11:838351-838822:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 327.824093 980.450451 0.233 7.6384E-05 0.31249 0.00010244 0.54549 0.00017883 327.8241229653765 65.299 0.67055 61.841 61.538 62.209 -3.4581 -0.069196 -0.00022666 NaN 1.6526 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2775000 4653 9465 2796 2799 -0.04055637588248828 ATWPHPSW 8 Unmodified _ATWPHPSW_ 0 0 0 ENST00000397420.7_1_11:838351-838822:+|nuORF ENST00000397420.7_1_11:838351-838822:+|nuORF ENST00000397420.7_1_11:838351-838822:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 327.824093 980.450451 -0.38241 -0.00012536 0.63545 0.00020832 0.25304 8.2952E-05 327.8242872114974 65.252 0.67729 61.969 61.587 62.265 -3.2832 0.058248 9.0957E-05 NaN 1.6526 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2057600 4654 9465 2796 2799 -0.04055637588248828 ATWSWPRSS 9 Unmodified _ATWSWPRSS_ 0 0 0 ENST00000535028.5_1_9:140000303-140001810:+|nuORF ENST00000535028.5_1_9:140000303-140001810:+|nuORF ENST00000535028.5_1_9:140000303-140001810:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 359.5574645996094 3 359.841924 1076.50394 -0.41281 -0.00014854 0.72016 0.00025914 0.30735 0.0001106 359.8422046409661 63.985 0.62361 60.728 60.468 61.091 -3.2567 37 17 3 0 0 0 0.73814 1 12039 12039 4.5289 0.33936 1 2120900 4655 11013 2797 2800 4963 4963 -0.031248848763880233 ATWTRTLAR 9 Unmodified _ATWTRTLAR_ 0 0 0 REV__TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant REV__TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 359.20648193359375 3 359.205085 1074.59343 NaN NaN NaN NaN NaN NaN NaN 126.9 1 126.9 126.4 127.4 0 0 0 0 0.23508 1 25046 25046 0.86438 0.23755 1 + 4656 24785 2798 2801 4964 4964 0.05911369802970512 ATWYRVTF 8 Unmodified _ATWYRVTF_ 0 0 0 SNED1|p.C661Afs*7|1|0.18|ENSG00000162804|chr2:241052361-241052361|C/-|frameshift_variant;nc|ENSG00000162804|Q8TER0-5|SNED1;SNED1|p.R1289Gfs*59|1|0.09|ENSG00000162804|chr2:241073313-241073313|C/-|frameshift_variant;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;ENSG00000162804|ENST00000310397|SNED1 SNED1|p.C661Afs*7|1|0.18|ENSG00000162804|chr2:241052361-241052361|C/-|frameshift_variant SNED1|p.C661Afs*7|1|0.18|ENSG00000162804|chr2:241052361-241052361|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.257080078125 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 119.71 1 115.24 114.74 115.74 -4.467 0 0 0 0.21486 1 23047 23047 10.824 0.75 1 4657 5371 2799 2802 4965 4965 0.004054911343473577 ATYDYLAV 8 Unmodified _ATYDYLAV_ 0 0 0 REV__BLK|p.T155Pfs*10|1|0.32|ENSG00000136573|chr8:11550251-11550251|A/-|frameshift_variant REV__BLK|p.T155Pfs*10|1|0.32|ENSG00000136573|chr8:11550251-11550251|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2251892089844 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 16.695 1 15.341 14.841 15.841 -1.3534 0 0 0 0.21486 1 2380 2380 5.2307 0 1 + 4658 13195 2800 2803 4966 4966 -0.022092991221143166 ATYMNRKG 8 Unmodified _ATYMNRKG_ 0 0 0 REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1755676269531 3 314.160488 939.459635 NaN NaN NaN NaN NaN NaN NaN 79.835 1 79.835 79.335 80.335 0 0 0 0 0.21486 1 15538 15538 3.5965 1.9439 1 + 4659 12982 2801 2804 4967 4967 -0.012516122942201946 ATYMNRKG 8 Unmodified _ATYMNRKG_ 0 0 0 REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1676940917969 3 314.160488 939.459635 NaN NaN NaN NaN NaN NaN NaN 83.505 1 79.807 79.307 80.307 -3.6985 0 0 0 0.21486 1 15941 15941 3.5965 0.8613 1 + 4660 12982 2801 2804 4968 4968 -0.012516122942201946 ATYQVKGY 8 Unmodified _ATYQVKGY_ 0 0 0 ENST00000590278.1_1_19:33696051-33698478:+|nuORF;ENSG00000130881|ENST00000253193|LRP3 ENST00000590278.1_1_19:33696051-33698478:+|nuORF ENST00000590278.1_1_19:33696051-33698478:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2406311035156 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 52.888 1 52.888 52.388 53.388 0 0 0 0 0.21486 1 10059 10059 10.183 0 1 4661 3648 2802 2805 4969 4969 -0.0016619051090174253 ATYSLRKVCT 10 Unmodified _ATYSLRKVCT_ 0 0 0 ENST00000435941.1_1_X:122250823-122251621:-|nuORF ENST00000435941.1_1_X:122250823-122251621:-|nuORF ENST00000435941.1_1_X:122250823-122251621:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2059326171875 3 381.205986 1140.59613 -0.1402 -5.3445E-05 -0.42229 -0.00016098 -0.56248 -0.00021442 381.2057459734836 30.552 0.4184 28.478 28.291 28.71 -2.0743 17 11 2 0 0 0 0.75318 1 5274 5274 4.7159 1.1289 1 521170 4662 9833 2803 2806 4970 4970 0.0314545714563792 ATYSQAECKDE 11 Unmodified _ATYSQAECKDE_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7672119140625 2 622.758617 1243.50268 NaN NaN NaN NaN NaN NaN NaN 60.707 1 60.707 60.207 61.207 0 0 0 0 0.23379 1 11643 11643 5.2969 1.3525 1 + 4663 17221 2804 2807 4971 4971 -0.10932931818115321 ATYWLELF 8 Unmodified _ATYWLELF_ 0 0 0 REV__OR6N2|p.L66I|1|0.34|ENSG00000188340|chr1:158777440-158777440|G/T|missense_variant REV__OR6N2|p.L66I|1|0.34|ENSG00000188340|chr1:158777440-158777440|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2673950195312 2 521.765843 1041.51713 -0.51341 -0.00026788 0.46688 0.0002436 -0.046533 -2.4279E-05 521.7660197367095 64.901 0.55671 61.442 61.089 61.646 -3.4581 25 15 2 0 0 0 8448 1 12087 12087 0.62683 0 1 1670100 + 4664 19141 2805 2808 4972 4972 -0.00196446817017204 ATYWLELF 8 Unmodified _ATYWLELF_ 0 0 0 REV__OR6N2|p.L66I|1|0.34|ENSG00000188340|chr1:158777440-158777440|G/T|missense_variant REV__OR6N2|p.L66I|1|0.34|ENSG00000188340|chr1:158777440-158777440|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2671508789062 2 521.765843 1041.51713 -1.5386 -0.00080277 0.78516 0.00040967 -0.75341 -0.0003931 521.7663293806626 15.443 3.2314 14.09 13.507 16.739 -1.3534 185 92 4 0 0 0 0.77935 1 2650 2650 5.2307 0.90143 1 13595000 + 4665 19141 2805 2808 4973 4973 -0.00196446817017204 AVAAPKAESA 10 Unmodified _AVAAPKAESA_ 0 0 0 REV__ENSG00000137076|ENST00000314888|TLN1 REV__ENSG00000137076|ENST00000314888|TLN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2307434082031 2 457.750724 913.486896 -0.2304 -0.00010546 0.34565 0.00015822 0.11526 5.2759E-05 457.7508712371614 21.474 0.80429 20.09 19.793 20.597 -1.3847 65 22 5 0 0 0 0.59264 1 3398 3398 29.082 0 1 46481000 + 4666 16374 2806 2809 4974 4974 0.026691945178072274 AVAAVLIKVY 10 Unmodified _AVAAVLIKVY_ 0 0 0 REV__ENSG00000102290|ENST00000682573|PCDH11X REV__ENSG00000102290|ENST00000682573|PCDH11X MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6884155273438 2 523.83406 1045.65357 -0.11301 -5.92E-05 1.3619 0.00071343 1.2489 0.00065423 523.8340009706155 63.28 0.43699 60.282 60.051 60.488 -2.9975 26 12 3 0 0 0 0.91046 1 12218 12218 4.3292 0 1 1558800 + 4667 14833 2807 2810 4975 4975 0.13256667413520518 AVAAVLTQV 9 Unmodified _AVAAVLTQV_ 0 0 0 ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1 ENST00000378892.5_1_9:34637493-34637721:-|nuORF ENST00000378892.5_1_9:34637493-34637721:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2155456542969 2 436.26601 870.517468 0.14637 6.3855E-05 0.018228 7.9522E-06 0.16459 7.1807E-05 436.2659747287942 114.99 0.62376 114.99 114.65 115.27 0 25 17 2 0 0 0 0.44262 1 22621 22621 23.148 3.7094 1 2025400 4668 4725 2808 2811 4976 4976 0.0770297290284816 AVAAVLTQV 9 Unmodified _AVAAVLTQV_ 0 0 0 ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1 ENST00000378892.5_1_9:34637493-34637721:-|nuORF ENST00000378892.5_1_9:34637493-34637721:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.26601 870.517468 0.15899 6.9363E-05 -0.15751 -6.8715E-05 0.0014849 6.4782E-07 436.2659005183155 119.17 0.74191 114.67 114.33 115.07 -4.502 -0.13753 1.3355E-05 NaN 23.148 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 3042200 4669 4725 2808 2811 0.0770297290284816 AVAAVLTQV 9 Unmodified _AVAAVLTQV_ 0 0 0 ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1 ENST00000378892.5_1_9:34637493-34637721:-|nuORF ENST00000378892.5_1_9:34637493-34637721:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 436.26601 870.517468 0.50243 0.00021919 -0.62496 -0.00027265 -0.12253 -5.3456E-05 436.2657146725079 119.38 0.63629 114.74 114.42 115.06 -4.645 -0.071327 -0.00039451 NaN 23.148 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2667700 4670 4725 2808 2811 0.0770297290284816 AVAAVLTQV 9 Unmodified _AVAAVLTQV_ 0 0 0 ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1 ENST00000378892.5_1_9:34637493-34637721:-|nuORF ENST00000378892.5_1_9:34637493-34637721:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 436.26601 870.517468 0.21774 9.4991E-05 -0.063199 -2.7571E-05 0.15454 6.742E-05 436.2659272179294 119.3 0.69453 114.83 114.47 115.16 -4.467 0.027405 9.5643E-05 NaN 23.148 37 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2275700 4671 4725 2808 2811 0.0770297290284816 AVADAVIEK 9 Unmodified _AVADAVIEK_ 0 0 0 ENST00000369426.9_1_1:119575536-119588262:-|nuORF;ENSG00000116874|ENST00000235521|WARS2 ENST00000369426.9_1_1:119575536-119588262:-|nuORF ENST00000369426.9_1_1:119575536-119588262:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2398376464844 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 86.361 1 82.41 81.91 82.91 -3.9503 0 0 0 0.23508 1 16438 16438 11.64 0.81637 1 4672 2959 2809 2812 4977 4977 0.04662365177614447 AVADGSVAEYI 11 Unmodified _AVADGSVAEYI_ 0 0 0 REV__nc|ENSG00000163249|Q8N7R7-2|CCNYL1 REV__nc|ENSG00000163249|Q8N7R7-2|CCNYL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7720336914062 2 547.771854 1093.52915 0.59732 0.0003272 1.7503 0.00095875 2.3476 0.0012859 547.7716692582165 102.63 1.4577 98.605 97.425 98.882 -4.0212 58 41 2 0 0 0 0.59903 1 19661 19661 18.146 2.2992 1 2599000 + 4673 17555 2810 2813 4978 4978 -0.013868748644881634 AVAEAALAEA 10 Unmodified _AVAEAALAEA_ 0 0 0 REV__nc|ENSG00000185418|A2RTX5-2|TARS3 REV__nc|ENSG00000185418|A2RTX5-2|TARS3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22479248046875 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 51.406 1 48.354 47.854 48.854 -3.0517 0 0 0 2.8426 1 9471 9471 14.405 11.762 1 + 4674 18966 2811 2814 4979 4979 0.010254882809022092 AVAEELLDP 9 Unmodified _AVAEELLDP_ 0 0 0 PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1;PLXND1|p.S1268Qfs*34|1|0.3|ENSG00000004399|chr3:129569907-129569908|-/C|frameshift_variant;ENST00000514990.1_1_3:129288623-129290035:-|nuORF PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7389831542969 2 478.75039 955.486227 NaN NaN NaN NaN NaN NaN NaN 68.43 1 65.25 64.75 65.75 -3.1796 0 0 0 0.21848 1 13290 13290 18.135 0 1 4675 973 2812 2815 4980 4980 0.006703550781026024 AVAEKDSEI 9 Unmodified _AVAEKDSEI_ 0 0 0 ENSG00000106804|ENST00000223642|C5 ENSG00000106804|ENST00000223642|C5 ENSG00000106804|ENST00000223642|C5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2440185546875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 101.72 1 101.72 101.22 102.22 0 0 0 0 0.22251 1 19971 19971 16.942 2.104 1 4676 2406 2813 2816 4981 4981 -0.0054283292729451205 AVAITPAEHW 10 Unmodified _AVAITPAEHW_ 0 0 0 REV__ENSG00000179002|ENST00000375371|TAS1R2 REV__ENSG00000179002|ENST00000375371|TAS1R2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.78759765625 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 157.45 1 157.45 156.95 157.95 0 0 0 0 0.22588 1 31602 31602 7.2892 0 1 + 4677 18632 2814 2817 4982 4982 0.012608588174998658 AVAKCAQLL 9 Unmodified _AVAKCAQLL_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23876953125 2 458.767863 915.521173 0.10403 4.7726E-05 -0.062979 -2.8893E-05 0.041052 1.8833E-05 458.76765915623986 92.047 0.47945 88.239 87.962 88.442 -3.8083 18 13 2 0 0 0 0.70873 1 17621 17621 18.135 0 1 788850 4678 6721 2815 2818 4983 4983 0.06003319405044749 AVAKCAQLL 9 Unmodified _AVAKCAQLL_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.767863 915.521173 0.22886 0.00010499 -0.089941 -4.1262E-05 0.13892 6.3733E-05 458.7675687346855 92.188 0.45325 88.093 87.842 88.295 -4.0946 -0.072848 -1.429E-05 NaN 18.135 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 766500 4679 6721 2815 2818 0.06003319405044749 AVANIVNSV 9 Unmodified _AVANIVNSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 443.1648254394531 2 443.753267 885.491981 -0.10772 -4.7802E-05 0.24326 0.00010795 0.13554 6.0145E-05 443.75332401244907 101.94 0.82626 97.758 97.304 98.13 -4.1861 58 23 3 0 0 0 0.06817 1 20019 20019 67.187 38.727 1 14010000 4680 1199 2816 2819 4984 4984 0.04465498380432109 AVANIVNSV 9 Unmodified _AVANIVNSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 443.753267 885.491981 0.31171 0.00013832 -0.21278 -9.442E-05 0.098933 4.3902E-05 443.7531040999576 98.097 0.86528 98.097 97.641 98.506 0 0.20092 -0.00014677 NaN 67.187 57 24 3 NaN NaN NaN NaN 0 NaN NaN 0 12310000 4681 1199 2816 2819 0.04465498380432109 AVANIVNSV 9 Unmodified _AVANIVNSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 443.753267 885.491981 0.27762 0.00012319 -0.15255 -6.7692E-05 0.12507 5.5501E-05 443.7531267471476 102.13 0.74856 97.811 97.471 98.22 -4.3208 -0.084381 -9.3317E-05 NaN 67.187 55 21 3 NaN NaN NaN NaN 0 NaN NaN 0 13055000 4682 1199 2816 2819 0.04465498380432109 AVANIVNSV 9 Unmodified _AVANIVNSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 443.753267 885.491981 0.35215 0.00015627 -0.18857 -8.3679E-05 0.16358 7.2591E-05 443.75311948158884 101.94 0.85992 97.917 97.494 98.354 -4.0212 0.021472 -0.00012529 NaN 67.187 73 24 4 NaN NaN NaN NaN 0 NaN NaN 0 13310000 4683 1199 2816 2819 0.04465498380432109 AVAQPRVAPV 10 Unmodified _AVAQPRVAPV_ 0 0 0 ENST00000381482.7_1_20:2126675-2127125:+|nuORF ENST00000381482.7_1_20:2126675-2127125:+|nuORF ENST00000381482.7_1_20:2126675-2127125:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.5379333496094 3 336.538064 1006.59236 NaN NaN NaN NaN NaN NaN NaN 44.922 1 42.132 41.632 42.632 -2.79 0 0 0 2.8426 1 8453 8453 0.51642 0 1 4684 9330 2817 2820 4985 4985 0.08933155434078799 AVAQTVEELK 10 Unmodified _AVAQTVEELK_ 0 0 0 nc|ENSG00000270379|A2RTY3-5|HEATR9;nc|ENSG00000270379|A2RTY3-4|HEATR9;nc|ENSG00000270379|A2RTY3-3|HEATR9;ENSG00000270379|ENST00000604834|HEATR9 nc|ENSG00000270379|A2RTY3-5|HEATR9 nc|ENSG00000270379|A2RTY3-5|HEATR9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7723999023438 2 544.303321 1086.59209 0.1497 8.1481E-05 3.3703 0.0018345 3.52 0.001916 544.3042649951716 150.12 0.20561 144.92 144.82 145.02 -5.1994 7 5 2 0 0 0 0.79872 1 29103 29103 13.906 0 1 1730500 4685 7999 2818 2821 4986 4986 0.0522569092354388 AVARRVLTA 9 Unmodified _AVARRVLTA_ 0 0 0 ENST00000479768.6_1_7:142643674-142659293:-|nuORF;ENSG00000197993|ENST00000355265|KEL ENST00000479768.6_1_7:142643674-142659293:-|nuORF ENST00000479768.6_1_7:142643674-142659293:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7406005859375 2 478.803626 955.592698 NaN NaN NaN NaN NaN NaN NaN 114.1 1 109.78 109.28 110.28 -4.3136 0 0 0 0.23508 1 21977 21977 8.5933 2.8329 1 4686 7419 2819 2822 4987 4987 0.11312575153920079 AVASWGPW 8 Unmodified _AVASWGPW_ 0 0 0 REV__ENST00000579764.5_1_18:21927761-21957497:-|nuORF REV__ENST00000579764.5_1_18:21927761-21957497:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2171936035156 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 95.668 1 91.619 91.119 92.119 -4.0496 0 0 0 0.21486 1 18755 18755 5.7604 0 1 + 4687 23230 2820 2823 4988 4988 -0.023224249912459527 AVATAAEADP 10 Unmodified _AVATAAEADP_ 0 0 0 REV__ENSG00000189139|ENST00000340446|FSCB REV__ENSG00000189139|ENST00000340446|FSCB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2243957519531 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 35.132 1 32.739 32.239 33.239 -2.3938 0 0 0 0.22588 1 6465 6465 10.824 0 1 + 4688 19197 2821 2824 4989 4989 -0.026113886158213973 AVATFLVQI 9 Unmodified _AVATFLVQI_ 0 0 0 REV__ENSG00000136856|ENST00000373371|SLC2A8 REV__ENSG00000136856|ENST00000373371|SLC2A8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.254638671875 2 481.289485 960.564418 0.05407 2.6023E-05 -0.10044 -4.8341E-05 -0.04637 -2.2318E-05 481.2894826071891 136.59 0.77408 131.95 131.53 132.31 -4.6399 40 21 3 0 0 0 0.41781 1 26882 26882 24.674 3.8027 1 2700900 + 4689 16356 2822 2825 4990 4990 0.08255832453994572 AVATRARRSEK 11 Unmodified _AVATRARRSEK_ 0 0 0 ENST00000235382.6_1_1:192778208-192778301:+|nuORF ENST00000235382.6_1_1:192778208-192778301:+|nuORF ENST00000235382.6_1_1:192778208-192778301:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7814331054688 2 622.862734 1243.71092 0.073909 4.6035E-05 3.5463 0.0022088 3.6202 0.0022549 622.8645393378591 65.701 0.27657 65.701 65.552 65.828 0 9 7 2 0 0 0 0.92792 1 12656 12656 5.2969 1.7004 1 8774800 4690 8167 2823 2826 4991 4991 0.09880902671784497 AVATSFNNVY 10 Unmodified _AVATSFNNVY_ 0 0 0 REV__ENST00000523711.5_1_8:1824717-1874701:+|nuORF REV__ENST00000523711.5_1_8:1824717-1874701:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7816162109375 2 543.266739 1084.51892 -0.026433 -1.436E-05 3.732 0.0020275 3.7056 0.0020131 543.268887310518 107.45 0.34341 103.04 102.89 103.23 -4.4121 14 9 2 0 0 0 0.59928 2 20594 20594;20608 19.257 3.1079 1 1152300 + 4691 13106 2824 2827 4992;4993 4992 -0.019954377990416106 AVAVHYKCA 9 Unmodified _AVAVHYKCA_ 0 0 0 REV__nc|ENSG00000185963|Q8TD16|BICD2 REV__nc|ENSG00000185963|Q8TD16|BICD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.179931640625 3 321.168984 960.485122 NaN NaN NaN NaN NaN NaN NaN 77.016 1 77.016 76.516 77.516 0 0 0 0 0.23508 1 14969 14969 1.0715 0.10919 1 + 4692 19001 2825 2828 4994 4994 0.0032986222819317845 AVCGARRIRS 10 Unmodified _AVCGARRIRS_ 0 0 0 ENST00000320895.9_1_5:1344528-1345152:-|nuORF ENST00000320895.9_1_5:1344528-1345152:-|nuORF ENST00000320895.9_1_5:1344528-1345152:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 364.22503662109375 3 363.541703 1087.60328 0.3359 0.00012211 -0.33927 -0.00012334 -0.0033763 -1.2274E-06 363.5414272754746 87.794 0.81019 83.799 83.378 84.188 -3.9953 40 22 3 0 0 0 0.36162 1 16688 16688 25.997 13.757 1 1442200 4693 8714 2826 2829 4995 4995 0.06298234536711789 AVDDFNLKY 9 Unmodified _AVDDFNLKY_ 0 0 0 nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 nc|ENSG00000108244|Q9C075-2|KRT23 nc|ENSG00000108244|Q9C075-2|KRT23 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7718505859375 2 542.769114 1083.52368 0.6569 0.00035654 -0.31525 -0.00017111 0.34165 0.00018544 542.7687895375058 113.11 0.66422 108.84 108.5 109.16 -4.2725 42 18 4 0 0 0 0.31598 1 21780 21780 39.95 19.535 1 2067400 + 4694 706 2827 2830 4996 4996 -0.014745536562713824 AVDDFNLKY 9 Unmodified _AVDDFNLKY_ 0 0 0 nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 nc|ENSG00000108244|Q9C075-2|KRT23 nc|ENSG00000108244|Q9C075-2|KRT23 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.769114 1083.52368 0.45487 0.00024689 -0.89861 -0.00048774 -0.44375 -0.00024085 542.7688965904788 108.86 0.49847 108.86 108.59 109.09 0 -0.024849 -0.0011432 NaN 39.95 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1313600 + 4695 706 2827 2830 -0.014745536562713824 AVDDFNLKY 9 Unmodified _AVDDFNLKY_ 0 0 0 nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 nc|ENSG00000108244|Q9C075-2|KRT23 nc|ENSG00000108244|Q9C075-2|KRT23 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.769114 1083.52368 0.089867 4.8777E-05 0.49827 0.00027044 0.58814 0.00031922 542.7693346373884 113.39 0.60345 108.93 108.68 109.29 -4.4539 0.046085 0.00037319 NaN 39.95 31 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3024500 + 4696 706 2827 2830 -0.014745536562713824 AVDDFNLKY 9 Unmodified _AVDDFNLKY_ 0 0 0 nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 nc|ENSG00000108244|Q9C075-2|KRT23 nc|ENSG00000108244|Q9C075-2|KRT23 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.769114 1083.52368 0.085138 4.621E-05 0.27461 0.00014905 0.35975 0.00019526 542.7692801162744 113.44 0.69688 108.92 108.61 109.31 -4.5259 0.029351 0.0001304 NaN 39.95 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2695600 + 4697 706 2827 2830 -0.014745536562713824 AVDDMIADL 9 Unmodified _AVDDMIADL_ 0 0 0 NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant;NBEA|p.N854Kfs*18|1|0.22|ENSG00000172915|chr13:35156110-35156111|-/A|frameshift_variant;NBEA|p.N1121Kfs*2|1|0.35|ENSG00000172915|chr13:35159525-35159526|-/A|frameshift_variant;NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant;nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2401428222656 2 481.7286 961.442648 0.14851 7.1541E-05 0.88389 0.0004258 1.0324 0.00049734 481.7289757183645 146.42 0.89299 141.31 140.93 141.82 -5.1108 69 25 4 0 0 0 0.66537 1 28239 28239 8.5933 0.68312 1 16993000 4698 6251 2828 2831 4997 4997 -0.03961577690699869 AVDEAFTVK 9 Unmodified _AVDEAFTVK_ 0 0 0 ENST00000482005.5_1_17:61936677-61937556:+|nuORF ENST00000482005.5_1_17:61936677-61937556:+|nuORF ENST00000482005.5_1_17:61936677-61937556:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.258056640625 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 158.66 1 153.87 153.37 154.37 -4.7952 0 0 0 0.19679 1 31553 31553 0.87518 0.46691 1 4699 10388 2829 2832 4998 4998 0.012100613150096251 AVDEPFDY 8 Unmodified _AVDEPFDY_ 0 0 0 REV__ENST00000497706.5_1_6:31865631-31903710:+|nuORF REV__ENST00000497706.5_1_6:31865631-31903710:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7411193847656 2 478.205815 954.397078 -0.042206 -2.0183E-05 0.25284 0.00012091 0.21063 0.00010073 478.20593812067483 79.016 1.0524 75.34 74.887 75.939 -3.676 37 29 2 0 0 0 0.64227 1 15067 15067 19.439 1.304 1 1334800 + 4700 17837 2830 2833 4999 4999 -0.08194479881433381 AVDEPFDY 8 Unmodified _AVDEPFDY_ 0 0 0 REV__ENST00000497706.5_1_6:31865631-31903710:+|nuORF REV__ENST00000497706.5_1_6:31865631-31903710:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.205815 954.397078 -0.054599 -2.611E-05 1.1469 0.00054847 1.0923 0.00052236 478.2064475720925 78.996 0.66158 75.191 74.984 75.646 -3.8048 -0.039262 0.00057062 NaN 19.439 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1053500 + 4701 17837 2830 2833 -0.08194479881433381 AVDGNTVEL 9 Unmodified _AVDGNTVEL_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2351989746094 2 459.232364 916.450176 -0.071847 -3.2995E-05 0.19857 9.1191E-05 0.12673 5.8196E-05 459.232399682134 78.659 1.0256 75.195 74.748 75.774 -3.4633 84 28 4 0 0 0 0.19311 2 15383 15341;15383 37.974 5.857 1 21308000 4702 6537 2831 2834 5000;5001 5001 -0.011391020987502998 AVDGNTVEL 9 Unmodified _AVDGNTVEL_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2350769042969 2 459.232364 916.450176 -0.094023 -4.3179E-05 0.28788 0.0001322 0.19386 8.9025E-05 459.2324403680852 79.156 1.0229 75.351 74.841 75.864 -3.8048 78 28 4 0 0 0 0.35443 2 14993 14993;15042 28.487 3.813 1 16263000 4703 6537 2831 2834 5002;5003 5002 -0.011391020987502998 AVDGNTVEL 9 Unmodified _AVDGNTVEL_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2354431152344 2 459.232364 916.450176 -0.052455 -2.4089E-05 0.24542 0.0001127 0.19296 8.8614E-05 459.23242804028024 79 1.0539 75.323 74.816 75.87 -3.676 72 29 4 0 0 0 0.28819 1 15049 15049 32.305 10.559 1 19758000 4704 6537 2831 2834 5004 5004 -0.011391020987502998 AVDKNRLTY 9 Unmodified _AVDKNRLTY_ 0 0 0 REV__ENSG00000244623|ENST00000316368|OR2AE1 REV__ENSG00000244623|ENST00000316368|OR2AE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015380859375 3 360.532979 1078.57711 0.076673 2.7643E-05 -0.096659 -3.4849E-05 -0.019985 -7.2054E-06 360.5329003687765 82.528 0.72173 78.654 78.297 79.019 -3.8736 44 20 3 0 0 0 0.59384 1 15630 15630 8.7454 0.58988 1 2403800 + 4705 19813 2832 2835 5005 5005 0.04096243846242942 AVDNRCVP 8 Unmodified _AVDNRCVP_ 0 0 0 REV__GPX1|p.N163K|1|0.47|ENSG00000233276|chr3:49357511-49357511|G/C|missense_variant REV__GPX1|p.N163K|1|0.47|ENSG00000233276|chr3:49357511-49357511|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2154541015625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 121.26 1 116.57 116.07 117.07 -4.6873 0 0 0 0.21486 1 23277 23277 5.7604 0 1 + 4706 19755 2833 2836 5006 5006 -0.023875877026057424 AVDSDAEYYF 10 Unmodified _AVDSDAEYYF_ 0 0 0 REV__EPHB3|p.D878Tfs*88|1|0.03|ENSG00000182580|chr3:184581064-184581065|-/ACTGCTGGGTGTGT|frameshift_variant REV__EPHB3|p.D878Tfs*88|1|0.03|ENSG00000182580|chr3:184581064-184581065|-/ACTGCTGGGTGTGT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2537841796875 2 590.245669 1178.47678 NaN NaN NaN NaN NaN NaN NaN 112.67 1 108.15 107.65 108.65 -4.5259 0 0 0 0.22588 1 21628 21628 7.2892 0.93513 1 + 4707 18789 2834 2837 5007 5007 -0.10531457998104088 AVDSDAEYYF 10 Unmodified _AVDSDAEYYF_ 0 0 0 REV__EPHB3|p.D878Tfs*88|1|0.03|ENSG00000182580|chr3:184581064-184581065|-/ACTGCTGGGTGTGT|frameshift_variant REV__EPHB3|p.D878Tfs*88|1|0.03|ENSG00000182580|chr3:184581064-184581065|-/ACTGCTGGGTGTGT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.250732421875 2 590.245669 1178.47678 NaN NaN NaN NaN NaN NaN NaN 112.93 1 108.4 107.9 108.9 -4.5259 0 0 0 0.22588 1 21678 21678 7.2892 0.56607 1 + 4708 18789 2834 2837 5008 5008 -0.10531457998104088 AVDSSGRRA 9 Unmodified _AVDSSGRRA_ 0 0 0 ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2;PKP2|p.K456Nfs*3|1|0.41|ENSG00000057294|chr12:32850776-32850776|T/-|frameshift_variant ENSG00000057294|ENST00000340811|PKP2 ENSG00000057294|ENST00000340811|PKP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.242919921875 2 459.741222 917.467892 0.21786 0.00010016 0.44757 0.00020577 0.66543 0.00030593 459.74150110911245 86.28 1.0488 82.33 82.047 83.096 -3.9503 44 29 2 0 0 0 0.34815 1 16481 16481 0.96228 0.83446 1 1173800 4709 1284 2835 2838 5009 5009 0.005856579467604206 AVDTNPLSL 9 Unmodified _AVDTNPLSL_ 0 0 0 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24993896484375 2 465.250557 928.486562 0.18089 8.416E-05 -0.98356 -0.0004576 -0.80266 -0.00037344 465.2501294782471 118.58 0.69261 114.08 113.6 114.29 -4.502 31 19 2 0 0 0 0.13708 1 23333 23333 46.021 6.0636 1 756370 4710 4137 2836 2839 5010 5010 0.01945774797957256 AVDVEQVI 8 Unmodified _AVDVEQVI_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2;RAPGEF2|p.S522Vfs*12|5|0.29|ENSG00000109756|chr4:159332603-159332603|A/-|frameshift_variant ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2161560058594 2 436.739825 871.465098 0.064805 2.8303E-05 0.026539 1.1591E-05 0.091344 3.9894E-05 436.7397800863906 124.49 1.2937 119.84 119.27 120.57 -4.6495 95 35 4 0 0 0 0.53444 1 23868 23868 26.341 1.6674 1 41556000 4711 2541 2837 2840 5011 5011 0.024223897692422725 AVDVWALGV 9 Unmodified _AVDVWALGV_ 0 0 0 nc|ENSG00000130822|Q6P2M8-3|PNCK;ENST00000466074.5_1_X:152935914-152937529:-|nuORF;ENSG00000130822|ENST00000340888|PNCK;nc|ENSG00000130822|Q6P2M8-6|PNCK;nc|ENSG00000130822|Q6P2M8-2|PNCK;nc|ENSG00000130822|Q6P2M8-5|PNCK nc|ENSG00000130822|Q6P2M8-3|PNCK nc|ENSG00000130822|Q6P2M8-3|PNCK MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2464599609375 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 78.493 1 74.688 74.188 75.188 -3.8048 0 0 0 0.16428 1 14887 14887 28.487 6.7402 1 4712 3643 2838 2841 5012 5012 0.034706863857991266 AVDYLHLM 8 Unmodified _AVDYLHLM_ 0 0 0 ENSG00000140521|ENST00000268124|POLG ENSG00000140521|ENST00000268124|POLG ENSG00000140521|ENST00000268124|POLG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24542236328125 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 107.92 1 107.92 107.42 108.42 0 0 0 0 0.22834 1 21222 21222 3.5871 0 1 4713 4307 2839 2842 5013 5013 -0.007929598659302428 AVEEPRLHN 9 Unmodified _AVEEPRLHN_ 0 0 0 ENSG00000274252|ENST00000619998|GGTLC3;nc|ENSG00000197421|A6NGU5|GGT3P;nc|ENSG00000133475|P36268|GGT2P;nc|ENSG00000133475|P36268-3|GGT2P;nc|ENSG00000100031|P19440-3|GGT1;ENSG00000149435|ENST00000335694|GGTLC1;nc|ENSG00000133475|P36268-2|GGT2P;ENSG00000100031|ENST00000400382|GGT1;ENSG00000100121|ENST00000448514|GGTLC2 ENSG00000274252|ENST00000619998|GGTLC3 ENSG00000274252|ENST00000619998|GGTLC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2794189453125 2 532.777805 1063.54106 -0.25425 -0.00013546 0.43171 0.00023001 0.17747 9.4551E-05 532.7780228479888 24.197 1.0015 22.344 21.879 22.881 -1.8534 87 28 4 0 0 0 0.52396 1 3907 3907 18.146 3.741 1 14772000 4714 8016 2840 2843 5014 5014 0.011827866693920441 AVEISWDH 8 Unmodified _AVEISWDH_ 0 0 0 ITGAE|p.A1070V|1|0.16|ENSG00000083457|chr17:3723316-3723316|G/A|missense_variant ITGAE|p.A1070V|1|0.16|ENSG00000083457|chr17:3723316-3723316|G/A|missense_variant ITGAE|p.A1070V|1|0.16|ENSG00000083457|chr17:3723316-3723316|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7248229980469 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 30.093 1 28.2 27.7 28.7 -1.8928 0 0 0 0.21486 1 5144 5144 10.183 0.83596 1 4715 11962 2841 2844 5015 5015 -0.039556650333452126 AVEKWNEKKE 10 Unmodified _AVEKWNEKKE_ 0 0 0 MAP9|p.D594Rfs*2|1|0.11|ENSG00000164114|chr4:155352637-155352638|-/T|frameshift_variant;ENSG00000164114|ENST00000311277|MAP9 MAP9|p.D594Rfs*2|1|0.11|ENSG00000164114|chr4:155352637-155352638|-/T|frameshift_variant MAP9|p.D594Rfs*2|1|0.11|ENSG00000164114|chr4:155352637-155352638|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7645874023438 2 630.832777 1259.651 NaN NaN NaN NaN NaN NaN NaN 159.12 1 153.85 153.35 154.35 -5.2712 0 0 0 0.22588 1 30876 30876 12.241 5.5175 1 4716 5510 2842 2845 5016 5016 0.031561672178895606 AVEPCVPCP 9 Unmodified _AVEPCVPCP_ 0 0 0 ENST00000508148.1_1_1:1560498-1561120:+|nuORF ENST00000508148.1_1_1:1560498-1561120:+|nuORF ENST00000508148.1_1_1:1560498-1561120:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2338562011719 2 457.709156 913.40376 0.59905 0.00027419 -1.5841 -0.00072507 -0.98508 -0.00045088 457.70829639650276 81.271 0.5618 81.271 80.948 81.51 0 18 15 2 0 0 0 0.77732 1 15847 15847 18.135 5.6034 1 1004800 4717 10708 2843 2846 5017 5017 -0.05640581526063215 AVEPSDIAA 9 Unmodified _AVEPSDIAA_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB;CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant ENSG00000125817|ENST00000379751|CENPB;CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant ENSG00000125817|ENST00000379751|CENPB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2155456542969 2 436.721633 871.428712 -0.05427 -2.3701E-05 0.059973 2.6191E-05 0.005703 2.4906E-06 436.7215909204355 59.601 1.0841 56.378 55.734 56.818 -3.2237 68 30 3 0 0 0 0.52414 1 11050 11050 18.135 1.1927 1 13565000 4718 3392;481 2844 2847 5018 5018 -0.01214487127481334 AVEQLAEGL 9 Unmodified _AVEQLAEGL_ 0 0 0 ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENSG00000104164|ENST00000220531|BLOC1S6 ENST00000568816.5_1_15:45879846-45893495:+|nuORF ENST00000568816.5_1_15:45879846-45893495:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25042724609375 2 465.250557 928.486562 0.56813 0.00026432 -0.83651 -0.00038919 -0.26838 -0.00012486 465.2500566223146 113.24 0.8054 108.96 108.6 109.41 -4.2725 44 22 3 0 0 0 0.09143 1 21771 21771 58.679 2.5018 1 3547700 4719 11399 2845 2848 5019 5019 0.01945774797957256 AVEQRPNPGP 10 Unmodified _AVEQRPNPGP_ 0 0 0 nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2791137695312 2 532.777805 1063.54106 0.98164 0.000523 -0.8644 -0.00046053 0.11724 6.2464E-05 532.7773890455964 23.983 0.90497 22.429 22.047 22.952 -1.5532 78 25 4 0 0 0 0.59736 2 4233 4121;4233 19.362 6.3195 1 14331000 4720 4622 2846 2849 5020;5021 5021 0.011827866693920441 AVEQRPNPGP 10 Unmodified _AVEQRPNPGP_ 0 0 0 nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2791137695312 2 532.777805 1063.54106 0.37252 0.00019847 -0.23758 -0.00012658 0.13494 7.1893E-05 532.7777059891014 23.884 1.0017 22.35 21.883 22.884 -1.5342 83 28 4 0 0 0 0.61964 1 3825 3825 18.146 3.3081 1 19222000 4721 4622 2846 2849 5022 5022 0.011827866693920441 AVEQRPNPGP 10 Unmodified _AVEQRPNPGP_ 0 0 0 nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2792358398438 2 532.777805 1063.54106 -0.25425 -0.00013546 0.43171 0.00023001 0.17747 9.4551E-05 532.7780228479888 24.197 1.0015 22.344 21.879 22.881 -1.8534 87 28 4 0 0 0 0.61964 2 3952 3859;3952 18.146 2.9685 1 14772000 4722 4622 2846 2849 5023;5024 5024 0.011827866693920441 AVERFPPGG 9 Unmodified _AVERFPPGG_ 0 0 0 ENST00000367881.9_1_1:165738014-165738236:-|nuORF ENST00000367881.9_1_1:165738014-165738236:-|nuORF ENST00000367881.9_1_1:165738014-165738236:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24627685546875 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 153.41 1 153.41 152.91 153.91 0 0 0 0 0.23508 1 30737 30737 11.64 1.4569 1 4723 9085 2847 2850 5025 5025 0.009566315832444161 AVEVMCIVP 9 Unmodified _AVEVMCIVP_ 0 0 0 nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;ENST00000511019.1_1_5:14480069-14481814:+|nuORF nc|ENSG00000038382|O75962-4|TRIO nc|ENSG00000038382|O75962-4|TRIO MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24884033203125 2 480.748282 959.48201 -0.060564 -2.9116E-05 -0.86866 -0.00041761 -0.92922 -0.00044672 480.74791441461934 95.564 0.62537 91.683 91.331 91.956 -3.881 24 17 2 0 0 0 0.44856 1 18378 18378 1.2148 0 1 1302500 4724 1182 2848 2851 5026 5026 0.0006485105917590772 AVFVKQLPK 9 Unmodified _AVFVKQLPK_ 0 0 0 nc|ENSG00000111058|Q9H6R3-2|ACSS3;ENSG00000111058|ENST00000548058|ACSS3 nc|ENSG00000111058|Q9H6R3-2|ACSS3 nc|ENSG00000111058|Q9H6R3-2|ACSS3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.8604736328125 3 343.886694 1028.63825 NaN NaN NaN NaN NaN NaN NaN 32.16 1 32.16 31.66 32.66 0 0 0 0 0.19623 1 5833 5833 0.0033805 0 1 4725 2603 2849 2852 5027 5027 0.1250780061632213 AVGAKFGQVGL 11 Unmodified _AVGAKFGQVGL_ 0 0 0 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6996459960938 2 523.803291 1045.59203 -0.1191 -6.2384E-05 3.227 0.0016903 3.1079 0.0016279 524.3064607126659 59.056 0.34863 59.056 58.827 59.176 0 14 9 2 0 0 0 0.91954 1 11301 11301 5.7319 0 1 1112300 4726 1837 2850 2853 5028 5028 0.0710573571425357 AVGEHVFAV 9 Unmodified _AVGEHVFAV_ 0 0 0 CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant;ENSG00000141582|ENST00000269397|CBX4;CBX4|p.N231Tfs*3|2|0.38|ENSG00000141582|chr17:79834952-79834952|G/-|frameshift_variant;nc|ENSG00000141582|O00257-3|CBX4 CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2398986816406 2 464.747985 927.481417 0.10916 5.0731E-05 0.13845 6.4342E-05 0.2476 0.00011507 464.7480445805441 97.342 0.27283 93.108 92.916 93.189 -4.2348 10 7 2 0 0 0 0.65155 1 18596 18596 15.847 0 1 850550 4727 402 2851 2854 5029 5029 0.014775157260032756 AVGESEKIE 9 Unmodified _AVGESEKIE_ 0 0 0 REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1 REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2454833984375 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 101.22 1 96.923 96.423 97.423 -4.297 0 0 0 0.20628 1 19367 19367 21.747 1.293 1 + 4728 24981 2852 2855 5030 5030 -0.005428329272831434 AVGFNEMEAP 10 Unmodified _AVGFNEMEAP_ 0 0 0 ENSG00000180353|ENST00000314583|HCLS1 ENSG00000180353|ENST00000314583|HCLS1 ENSG00000180353|ENST00000314583|HCLS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.264404296875 2 532.739499 1063.46445 0.28142 0.00014993 -0.49564 -0.00026405 -0.21421 -0.00011412 532.7392668888472 50.271 0.50829 50.271 50.028 50.536 0 32 14 3 0 0 0 0.87854 1 9543 9543 5.7319 0 1 3357200 4729 6671 2853 2856 5031 5031 -0.06474772942146956 AVGHHISE 8 Unmodified _AVGHHISE_ 0 0 0 ENST00000523504.5_1_8:22880186-22926453:-|nuORF ENST00000523504.5_1_8:22880186-22926453:-|nuORF ENST00000523504.5_1_8:22880186-22926453:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2419128417969 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 5.5555 1 4.9293 4.4293 5.4293 -0.62626 0 0 0 0.21486 1 305 305 0.79363 0 1 4730 10872 2854 2857 5032 5032 -0.016205144849436692 AVGHHISE 8 Unmodified _AVGHHISE_ 0 0 0 ENST00000523504.5_1_8:22880186-22926453:-|nuORF ENST00000523504.5_1_8:22880186-22926453:-|nuORF ENST00000523504.5_1_8:22880186-22926453:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2380065917969 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 178.83 1 174.04 173.54 174.54 -4.7898 0 0 0 0.21486 1 36589 36589 0.79363 0 1 4731 10872 2854 2857 5033 5033 -0.016205144849436692 AVGLWRPWP 9 Unmodified _AVGLWRPWP_ 0 0 0 REV__ENSG00000117791|ENST00000366913|MTARC2 REV__ENSG00000117791|ENST00000366913|MTARC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.275146484375 2 541.300719 1080.58688 NaN NaN NaN NaN NaN NaN NaN 87.249 1 83.52 83.02 84.02 -3.7289 0 0 0 0.23411 1 16690 16690 13.508 1.8676 1 + 4732 15530 2855 2858 5034 5034 0.04981476642274174 AVGQRRPIF 9 Unmodified _AVGQRRPIF_ 0 0 0 REV__ENST00000473294.6_1_1:33098913-33099651:-|nuORF REV__ENST00000473294.6_1_1:33098913-33099651:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2594604492188 2 522.309075 1042.6036 -0.20767 -0.00010847 0.10459 5.463E-05 -0.10307 -5.3837E-05 522.3092162668537 122.69 0.62825 117.96 117.74 118.37 -4.731 26 17 2 0 0 0 0.8319 1 23542 23542 4.3292 0 1 1454200 + 4733 22070 2856 2859 5035 5035 0.08399977528210911 AVGTPNCVPVE 11 Unmodified _AVGTPNCVPVE_ 0 0 0 PLEKHG4B|p.G410Afs*7|1|0.52|ENSG00000153404|chr5:156154-156154|G/-|frameshift_variant;PLEKHG4B|p.P777Rfs*30|1|0.19|ENSG00000153404|chr5:163465-163465|C/-|frameshift_variant;ENSG00000153404|ENST00000637938|PLEKHG4B PLEKHG4B|p.G410Afs*7|1|0.52|ENSG00000153404|chr5:156154-156154|G/-|frameshift_variant PLEKHG4B|p.G410Afs*7|1|0.52|ENSG00000153404|chr5:156154-156154|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.792724609375 2 543.268424 1084.5223 0.79175 0.00043014 -0.079691 -4.3294E-05 0.71206 0.00038684 543.2683797511095 107.28 0.34105 103.14 102.88 103.22 -4.135 14 9 2 0 0 0 0.57511 2 20613 20613;20629 19.362 2.4196 1 945610 4734 4969 2857 2860 5036;5037 5036 -0.01658511016717057 AVGTPNCVPVE 11 Unmodified _AVGTPNCVPVE_ 0 0 0 PLEKHG4B|p.G410Afs*7|1|0.52|ENSG00000153404|chr5:156154-156154|G/-|frameshift_variant;PLEKHG4B|p.P777Rfs*30|1|0.19|ENSG00000153404|chr5:163465-163465|C/-|frameshift_variant;ENSG00000153404|ENST00000637938|PLEKHG4B PLEKHG4B|p.G410Afs*7|1|0.52|ENSG00000153404|chr5:156154-156154|G/-|frameshift_variant PLEKHG4B|p.G410Afs*7|1|0.52|ENSG00000153404|chr5:156154-156154|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.268424 1084.5223 -0.026433 -1.436E-05 0.62966 0.00034207 0.60322 0.00032771 543.268887310518 107.45 0.34341 103.04 102.89 103.23 -4.4121 -0.051021 0.00062002 NaN 19.362 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1152300 4735 4969 2857 2860 -0.01658511016717057 AVGTWLGQP 9 Unmodified _AVGTWLGQP_ 0 0 0 REV__nc|ENSG00000240505|O14836-3|TNFRSF13B REV__nc|ENSG00000240505|O14836-3|TNFRSF13B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2485656738281 2 464.747985 927.481417 -0.085525 -3.9748E-05 -0.33831 -0.00015723 -0.42383 -0.00019697 464.74784482513866 59.962 0.59159 57.029 56.749 57.341 -2.9333 27 16 2 0 0 0 0.2219 1 11561 11561 36.127 12.106 1 1101700 + 4736 19780 2858 2861 5038 5038 0.014775157260032756 AVGTWLGQP 9 Unmodified _AVGTWLGQP_ 0 0 0 REV__nc|ENSG00000240505|O14836-3|TNFRSF13B REV__nc|ENSG00000240505|O14836-3|TNFRSF13B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2501220703125 2 464.747985 927.481417 0.15013 6.9774E-05 -0.13155 -6.1137E-05 0.018583 8.6364E-06 464.74782734701677 60.211 0.60175 56.987 56.784 57.386 -3.2237 29 16 2 0 0 0 0.64382 1 11309 11309 10.074 0.72649 1 1361500 + 4737 19780 2858 2861 5039 5039 0.014775157260032756 AVGVPNKSHDQ 11 Unmodified _AVGVPNKSHDQ_ 0 0 0 REV__ENST00000561175.1_1_10:135085308-135086059:-|nuORF REV__ENST00000561175.1_1_10:135085308-135086059:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3262939453125 2 576.293819 1150.57309 0.41561 0.00023951 -2.0141 -0.0011607 -1.5984 -0.00092117 576.7927809939032 156.16 0.17917 150.91 150.78 150.96 -5.2526 5 4 2 0 0 0 0.95894 1 30280 30280 1.0715 0 1 1425800 + 4738 12944 2859 2862 5040 5040 0.003821543525191373 AVGVRALQQPL 11 Unmodified _AVGVRALQQPL_ 0 0 0 ENST00000424383.4_1_7:1784183-1785002:+|nuORF ENST00000424383.4_1_7:1784183-1785002:+|nuORF ENST00000424383.4_1_7:1784183-1785002:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3287353515625 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 156.19 1 156.19 155.69 156.69 0 0 0 0 0.23594 1 31329 31329 3.5965 0 1 4739 9702 2860 2863 5041 5041 0.11292785042655851 AVGWGSWSL 9 Unmodified _AVGWGSWSL_ 0 0 0 REV__ENST00000356892.3_1_X:128927898-128928024:+|nuORF REV__ENST00000356892.3_1_X:128927898-128928024:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.255126953125 2 481.74016 961.465767 NaN NaN NaN NaN NaN NaN NaN 157.64 1 152.36 151.86 152.86 -5.2854 0 0 0 0.23508 1 30594 30594 8.5933 0.68312 1 + 4740 20819 2861 2864 5042 5042 -0.01650770791047762 AVHKGKKC 8 Unmodified _AVHKGKKC_ 0 0 0 ZFY|p.M685Cfs*17|2|0.62|ENSG00000067646|chrY:2979634-2979634|A/-|frameshift_variant ZFY|p.M685Cfs*17|2|0.62|ENSG00000067646|chrY:2979634-2979634|A/-|frameshift_variant ZFY|p.M685Cfs*17|2|0.62|ENSG00000067646|chrY:2979634-2979634|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 435.753173828125 2 435.752547 869.490542 NaN NaN NaN NaN NaN NaN NaN 146.77 1 146.77 146.27 147.27 0 0 0 0 0.23749 1 29357 29357 0.12286 0.073072 1 4741 26599 2862 2865 5043 5043 0.050575858106640226 AVHLVIALA 9 Unmodified _AVHLVIALA_ 0 0 0 tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1 tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1 tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7533874511719 2 453.792195 905.569838 NaN NaN NaN NaN NaN NaN NaN 9.092 1 8.2977 7.7977 8.7977 -0.79424 0 0 0 0.19635 1 1020 1020 0 0 1 4742 25988 2863 2866 5044 5044 0.11327556036440001 AVHLVIALA 9 Unmodified _AVHLVIALA_ 0 0 0 tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1 tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1 tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7533874511719 2 453.792195 905.569838 NaN NaN NaN NaN NaN NaN NaN 9.1039 1 8.3096 7.8096 8.8096 -0.79424 0 0 0 0.23508 1 1022 1022 0 0 1 4743 25988 2863 2866 5045 5045 0.11327556036440001 AVHPQRAA 8 Unmodified _AVHPQRAA_ 0 0 0 REV__ENST00000282388.3_2_2:43451527-43452328:-|nuORF REV__ENST00000282388.3_2_2:43451527-43452328:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2383117675781 2 425.238119 848.461684 NaN NaN NaN NaN NaN NaN NaN 16.915 1 15.643 15.143 16.143 -1.2722 0 0 0 0.21486 1 2462 2462 10.183 0 1 + 4744 20312 2864 2867 5046 5046 0.0313918450589199 AVHPTSMAT 9 Unmodified _AVHPTSMAT_ 0 0 0 REV__ENSG00000147065|ENST00000360270|MSN REV__ENSG00000147065|ENST00000360270|MSN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2257385253906 2 457.723652 913.432752 -0.032478 -1.4866E-05 1.1796 0.00053993 1.1471 0.00052507 457.7240811195607 112.85 0.74735 108.32 107.94 108.68 -4.5259 32 20 2 0 0 0 0.59384 1 21716 21716 13.508 3.3245 1 1705800 + 4745 16917 2865 2868 5047 5047 -0.027427209054053492 AVHRRWAKQ 9 Unmodified _AVHRRWAKQ_ 0 0 0 REV__ENSG00000142347|ENST00000644032|MYO1F REV__ENSG00000142347|ENST00000644032|MYO1F MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3341674804688 2 576.330873 1150.64719 NaN NaN NaN NaN NaN NaN NaN 124.93 1 124.93 124.43 125.43 0 0 0 0 0.23508 1 24638 24638 7.9102 0.62092 1 + 4746 16667 2866 2869 5048 5048 0.07789587025354194 AVHVYDGPG 9 Unmodified _AVHVYDGPG_ 0 0 0 nc|ENSG00000197324|Q7Z4F1-2|LRP10;LRP10|p.P676Lfs*28|2|0.23|ENSG00000197324|chr14:22877407-22877407|C/-|frameshift_variant;ENSG00000197324|ENST00000359591|LRP10 nc|ENSG00000197324|Q7Z4F1-2|LRP10 nc|ENSG00000197324|Q7Z4F1-2|LRP10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22283935546875 2 457.721967 913.429381 0.039155 1.7922E-05 0.22677 0.0001038 0.26592 0.00012172 457.72188572048697 60.901 0.52327 57.531 57.238 57.761 -3.3694 30 14 3 0 0 0 0.52414 1 11365 11365 18.135 2.2878 1 1231800 4747 7355 2867 2870 5049 5049 -0.03079647687764009 AVIEHLERL 9 Unmodified _AVIEHLERL_ 0 0 0 ENSG00000257218|ENST00000551765|GATC ENSG00000257218|ENST00000551765|GATC ENSG00000257218|ENST00000551765|GATC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.2124328613281 3 360.545108 1078.61349 -0.31537 -0.0001137 0.15932 5.7442E-05 -0.15605 -5.6262E-05 360.5451657020719 87.241 0.76611 87.241 86.771 87.537 0 40 21 3 0 0 0 0.15889 1 17063 17063 27.129 16.23 1 3133600 4748 7942 2868 2871 5050 5050 0.0773312074295518 AVIEHLERL 9 Unmodified _AVIEHLERL_ 0 0 0 ENSG00000257218|ENST00000551765|GATC ENSG00000257218|ENST00000551765|GATC ENSG00000257218|ENST00000551765|GATC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 3 360.545108 1078.61349 -0.31679 -0.00011422 0.1652 5.9564E-05 -0.15159 -5.4655E-05 360.54518475481075 90.777 0.688 86.917 86.548 87.236 -3.8595 46 19 3 0 0 0 0.70812 1 17787 17787 29.437 6.7791 1 4788900 4749 7942 2868 2871 5051 5051 0.0773312074295518 AVIEHLERL 9 Unmodified _AVIEHLERL_ 0 0 0 ENSG00000257218|ENST00000551765|GATC ENSG00000257218|ENST00000551765|GATC ENSG00000257218|ENST00000551765|GATC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20166015625 3 360.545108 1078.61349 0.33265 0.00011994 -0.41626 -0.00015008 -0.083613 -3.0146E-05 360.5449642693013 90.981 0.62711 86.887 86.6 87.227 -4.0946 47 17 3 0 0 0 0.46261 1 17356 17356 35.612 22.74 1 3532900 4750 7942 2868 2871 5052 5052 0.0773312074295518 AVIEHLERL 9 Unmodified _AVIEHLERL_ 0 0 0 ENSG00000257218|ENST00000551765|GATC ENSG00000257218|ENST00000551765|GATC ENSG00000257218|ENST00000551765|GATC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.22198486328125 3 360.545108 1078.61349 -0.53632 -0.00019337 0.21235 7.6563E-05 -0.32396 -0.0001168 360.5452317794045 90.788 0.68777 87.01 86.644 87.331 -3.7779 46 19 3 0 0 0 0.10537 1 17358 17358 42.232 22.606 1 3891300 4751 7942 2868 2871 5053 5053 0.0773312074295518 AVIGDVIRV 9 Unmodified _AVIGDVIRV_ 0 0 0 ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 ENSG00000165732|ENST00000354185|DDX21 ENSG00000165732|ENST00000354185|DDX21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 471.20623779296875 2 471.292559 940.570566 -0.052846 -2.4906E-05 0.13024 6.138E-05 0.077393 3.6475E-05 471.29255973068405 130.22 0.84508 130.22 129.77 130.62 0 63 23 4 0 0 0 0.54058 1 25814 25814 14.957 14.957 1 16263000 4752 5658 2869 2872 5054 5054 0.09790350685523208 AVIMPVHY 8 Unmodified _AVIMPVHY_ 0 0 0 DRD3|p.V133I|1|0.35|ENSG00000151577|chr3:114147544-114147544|C/T|missense_variant DRD3|p.V133I|1|0.35|ENSG00000151577|chr3:114147544-114147544|C/T|missense_variant DRD3|p.V133I|1|0.35|ENSG00000151577|chr3:114147544-114147544|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2421569824219 2 465.249306 928.484059 NaN NaN NaN NaN NaN NaN NaN 48.439 1 45.496 44.996 45.996 -2.9421 0 0 0 0.21022 1 8845 8845 17.087 0.93744 1 4753 888 2870 2873 5055 5055 0.016956478592987878 AVISWGKQNPK 11 Unmodified _AVISWGKQNPK_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 614.3443603515625 2 614.345855 1226.67716 NaN NaN NaN NaN NaN NaN NaN 68.332 1 65.152 64.652 65.652 -3.1796 0 0 0 0.22085 1 13269 13269 13.906 5.1606 1 + 4754 17221 2871 2874 5056 5056 0.07288481180034978 AVKEDEINVY 10 Unmodified _AVKEDEINVY_ 0 0 0 nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-3|TRIO nc|ENSG00000038382|O75962-4|TRIO nc|ENSG00000038382|O75962-4|TRIO MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2589721679688 2 590.298236 1178.58192 NaN NaN NaN NaN NaN NaN NaN 133.16 1 128.52 128.02 129.02 -4.6399 0 0 0 0.22588 1 26254 26254 4.3292 0 1 4755 1182 2872 2875 5057 5057 -0.00022916801663086517 AVKENKDDLNH 11 Unmodified _AVKENKDDLNH_ 0 0 0 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 428.14276123046875 3 428.217719 1281.63133 0.040172 1.7202E-05 -0.15192 -6.5053E-05 -0.11174 -4.785E-05 428.21755296233874 16.849 0.24629 16.849 16.714 16.96 0 11 6 2 0 0 0 0.82427 1 2612 2612 0.40827 0.13925 1 1129900 4756 438 2873 2876 5058 5058 0.0017779120714749297 AVKENKDDLNH 11 Unmodified _AVKENKDDLNH_ 0 0 0 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 428.217719 1281.63133 -0.2326 -9.9603E-05 0.16465 7.0506E-05 -0.067951 -2.9098E-05 428.21778601574806 18.245 0.27745 16.934 16.795 17.073 -1.3109 0.040326 -7.7836E-05 NaN 0.40827 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1200700 4757 438 2873 2876 0.0017779120714749297 AVKENKDDLNH 11 Unmodified _AVKENKDDLNH_ 0 0 0 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 428.217719 1281.63133 -0.42716 -0.00018292 0.11275 4.8284E-05 -0.3144 -0.00013463 428.217733576566 18.167 0.3349 16.895 16.764 17.099 -1.2722 0.00084206 -0.0001445 NaN 0.40827 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 708820 4758 438 2873 2876 0.0017779120714749297 AVKENKDDLNH 11 Unmodified _AVKENKDDLNH_ 0 0 0 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 428.217719 1281.63133 -1.4141 -0.00060554 0.99886 0.00042773 -0.41523 -0.00017781 428.2181116580263 18.413 0.37916 16.898 16.712 17.091 -1.5148 0.0039723 0.00099384 NaN 0.40827 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 883790 4759 438 2873 2876 0.0017779120714749297 AVKLRGVVIVP 11 Unmodified _AVKLRGVVIVP_ 0 0 0 REV__ENST00000563240.1_1_15:34653546-34654988:-|nuORF REV__ENST00000563240.1_1_15:34653546-34654988:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3160400390625 2 575.887158 1149.75976 0.26796 0.00015432 3.5543 0.0020469 3.8223 0.0022012 576.3906903134169 173.18 0.17015 168.39 168.34 168.51 -4.7898 6 4 2 0 0 0 0.96156 1 35310 35310 1.4819 1.0236 1 3465600 + 4760 18511 2874 2877 5059 5059 0.19087422978827817 AVLAAVTEV 9 Unmodified _AVLAAVTEV_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;RRP12|p.R136H|1|0.52|ENSG00000052749|chr10:97396264-97396264|C/T|missense_variant nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23004150390625 2 436.758018 871.501483 0.15384 6.7193E-05 -0.083979 -3.6678E-05 0.069865 3.0514E-05 436.75790941204457 118.6 0.91955 118.6 118.11 119.03 0 64 25 4 0 0 0 2.9662E-10 1 23355 23355 26.995 0 1 20946000 4761 1252 2875 2878 5060 5060 0.060592666659431416 AVLAAVTEV 9 Unmodified _AVLAAVTEV_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;RRP12|p.R136H|1|0.52|ENSG00000052749|chr10:97396264-97396264|C/T|missense_variant nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2341613769531 2 436.758018 871.501483 0.069377 3.0301E-05 -0.011677 -5.1001E-06 0.0577 2.5201E-05 436.75794206309115 122.84 1.0261 118.26 117.71 118.74 -4.5757 70 28 3 0 0 0 0.042687 1 24187 24187 74.396 10.833 1 21343000 4762 1252 2875 2878 5061 5061 0.060592666659431416 AVLAAVTEV 9 Unmodified _AVLAAVTEV_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;RRP12|p.R136H|1|0.52|ENSG00000052749|chr10:97396264-97396264|C/T|missense_variant nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21533203125 2 436.758018 871.501483 0.43402 0.00018956 -0.3883 -0.00016959 0.045718 1.9968E-05 436.75775970482727 123.17 1.061 118.44 117.9 118.97 -4.731 78 29 4 0 0 0 0.14543 1 23604 23604 46.921 0 1 18256000 4763 1252 2875 2878 5062 5062 0.060592666659431416 AVLAAVTEV 9 Unmodified _AVLAAVTEV_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;RRP12|p.R136H|1|0.52|ENSG00000052749|chr10:97396264-97396264|C/T|missense_variant nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2283630371094 2 436.758018 871.501483 0.10967 4.7901E-05 -0.073995 -3.2318E-05 0.035679 1.5583E-05 436.7579167240354 123.12 0.94341 118.53 117.91 118.86 -4.5926 79 26 4 0 0 0 0.012224 1 23727 23727 26.995 0 1 18164000 4764 1252 2875 2878 5063 5063 0.060592666659431416 AVLAMMKETA 10 Unmodified _AVLAMMKETA_ 0 0 0 REV__nc|ENSG00000135205|Q8IYE0-2|CCDC146 REV__nc|ENSG00000135205|Q8IYE0-2|CCDC146 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2669067382812 2 532.77757 1063.54059 -0.25425 -0.00013546 0.87187 0.00046451 0.61762 0.00032905 532.7780228479888 24.197 1.0015 22.344 21.879 22.881 -1.8534 87 28 4 0 0 0 0.72406 1 4013 4013 8.7454 0.58988 1 14772000 + 4765 13284 2876 2879 5064 5064 0.011359076336702856 AVLDRMHSL 9 Unmodified _AVLDRMHSL_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;COPA|p.R425W|1|0.38|ENSG00000122218|chr1:160307192-160307192|G/A|missense_variant ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.15850830078125 3 347.855176 1040.5437 -0.24008 -8.3512E-05 0.1046 3.6384E-05 -0.13548 -4.7127E-05 347.85511016271374 79.589 0.24461 76.079 75.979 76.223 -3.5102 9 6 2 0 0 0 0.47592 1 15545 15545 17.113 16.733 1 946390 4766 3214 2877 2880 5065 5065 0.02504918802674183 AVLGACEPR 9 Unmodified _AVLGACEPR_ 0 0 0 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23822021484375 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 85.762 1 85.762 85.262 86.262 0 0 0 0 0.23411 1 16738 16738 13.508 0.97634 1 4767 3574 2878 2881 5066 5066 0.003732718485366604 AVLKNGSDVPS 11 Unmodified _AVLKNGSDVPS_ 0 0 0 REV__nc|ENSG00000070182|P11277-3|SPTB REV__nc|ENSG00000070182|P11277-3|SPTB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7799072265625 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 165.83 1 160.85 160.35 161.35 -4.9811 0 0 0 0.20718 1 32449 32449 17.113 5.4726 1 + 4768 14252 2879 2882 5067 5067 0.032325202637593975 AVLKQQATQH 10 Unmodified _AVLKQQATQH_ 0 0 0 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.212158203125 3 375.212128 1122.61456 -1.2871 -0.00048295 0.91899 0.00034482 -0.36814 -0.00013813 375.21250188285336 22.238 0.49087 20.512 20.285 20.776 -1.7257 32 13 4 0 0 0 0.75099 1 3546 3546 5.4027 0.99656 1 2463700 4769 5269 2880 2883 5068 5068 0.05815335111856257 AVLLGGTEVG 10 Unmodified _AVLLGGTEVG_ 0 0 0 ENST00000478477.1_1_7:150775105-150776989:-|nuORF ENST00000478477.1_1_7:150775105-150776989:-|nuORF ENST00000478477.1_1_7:150775105-150776989:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2376403808594 2 458.260925 914.507297 0.34459 0.00015791 -0.26443 -0.00012118 0.080157 3.6733E-05 458.260732939496 89.173 1 85.128 84.587 85.587 -4.0443 42 28 2 0 0 0 0.6417 1 17062 17062 16.942 0.79319 1 1110300 4770 10320 2881 2884 5069 5069 0.04662365177625816 AVLMKKSET 9 Unmodified _AVLMKKSET_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000568855.1_1_16:70265056-70269235:-|nuORF;ENST00000529428.5_1_16:30280378-30291878:-|nuORF SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.0605163574219 3 336.191565 1005.55287 NaN NaN NaN NaN NaN NaN NaN 65.075 1 65.075 64.575 65.575 0 0 0 0 0.23508 1 12538 12538 5.2969 0.96765 1 4771 5117 2882 2885 5070 5070 0.05031267368360659 AVLPAITKYRI 11 Unmodified _AVLPAITKYRI_ 0 0 0 REV__ENST00000523277.6_1_8:41399408-41399603:+|nuORF REV__ENST00000523277.6_1_8:41399408-41399603:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7542724609375 2 622.889898 1243.76524 NaN NaN NaN NaN NaN NaN NaN 28.473 1 26.476 25.976 26.976 -1.9962 0 0 0 0.23634 1 4806 4806 3.2813 0.28607 1 + 4772 16938 2883 2886 5071 5071 0.15311101770635105 AVLSFIKLEQI 11 Unmodified _AVLSFIKLEQI_ 0 0 0 ENST00000414977.5_1_2:166627779-166650259:-|nuORF;ENST00000412248.5_1_2:166627779-166650972:-|nuORF ENST00000414977.5_1_2:166627779-166650259:-|nuORF ENST00000414977.5_1_2:166627779-166650259:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7711181640625 2 630.881739 1259.74892 NaN NaN NaN NaN NaN NaN NaN 164.94 1 159.92 159.42 160.42 -5.0203 0 0 0 0.22632 1 32208 32208 0.172 0.12821 1 4773 9583 2884 2887 5072 5072 0.12943975813891484 AVLTLLVSR 9 Unmodified _AVLTLLVSR_ 0 0 0 REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1803894042969 3 324.546449 970.617516 -0.7744 -0.00025133 0.94295 0.00030603 0.16855 5.4703E-05 324.5467035142542 61.811 0.37475 61.811 61.631 62.006 0 17 10 2 0 0 0 0.88211 1 11891 11891 2.9952 1.8019 1 2257900 + 4774 14103 2885 2888 5073 5073 0.13103210236658924 AVLTLLVSR 9 Unmodified _AVLTLLVSR_ 0 0 0 REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1804504394531 3 324.546449 970.617516 0.2248 7.2959E-05 -0.08546 -2.7736E-05 0.13934 4.5223E-05 324.54627892919655 65.183 0.49042 61.725 61.369 61.859 -3.4581 26 13 3 0 0 0 0.884 1 12151 12151 1.1933 0.9575 1 1730100 + 4775 14103 2885 2888 5074 5074 0.13103210236658924 AVLTLLVSR 9 Unmodified _AVLTLLVSR_ 0 0 0 REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 324.546449 970.617516 -0.24917 -8.0869E-05 0.023484 7.6216E-06 -0.22569 -7.3247E-05 324.54643485150723 64.721 0.55788 61.723 61.325 61.883 -2.9975 -0.0023258 -0.00027548 NaN 2.9952 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1250000 + 4776 14103 2885 2888 0.13103210236658924 AVMAKMAK 8 Unmodified _AVMAKMAK_ 0 0 0 ENSG00000123700|ENST00000243457|KCNJ2;ENSG00000182324|ENST00000342291|KCNJ14 ENSG00000123700|ENST00000243457|KCNJ2 ENSG00000123700|ENST00000243457|KCNJ2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2381896972656 2 425.237884 848.461215 NaN NaN NaN NaN NaN NaN NaN 17.064 1 15.549 15.049 16.049 -1.5148 0 0 0 0.21486 1 2453 2453 9.3474 0.75416 1 4777 3280 2886 2889 5075 5075 0.030923054701702313 AVMDEHAT 8 Unmodified _AVMDEHAT_ 0 0 0 ENST00000467100.1_1_9:133456332-133456455:+|nuORF ENST00000467100.1_1_9:133456332-133456455:+|nuORF ENST00000467100.1_1_9:133456332-133456455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2178955078125 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 39.338 1 39.338 38.838 39.838 0 0 0 0 0.2074 1 7302 7302 19.439 0 1 4778 10141 2887 2890 5076 5076 -0.07147286693464139 AVMLKTAESH 10 Unmodified _AVMLKTAESH_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7841186523438 2 543.784241 1085.55393 0.79682 0.0004333 -0.26765 -0.00014554 0.52917 0.00028775 543.7841187953875 106.98 0.20447 102.85 102.7 102.91 -4.135 6 5 2 0 0 0 0.51311 1 20567 20567 0.063865 0.020077 1 897890 4779 7985 2888 2891 5077 5077 0.0145748173724769 AVNEKINRV 9 Unmodified _AVNEKINRV_ 0 0 0 ENSG00000120137|ENST00000239231|PANK3 ENSG00000120137|ENST00000239231|PANK3 ENSG00000120137|ENST00000239231|PANK3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 347.85125732421875 3 348.204974 1041.59309 0.089166 3.1048E-05 -0.47903 -0.0001668 -0.38987 -0.00013575 348.2048665197717 25.555 0.31086 23.921 23.718 24.029 -1.6347 12 8 2 0 0 0 0.47592 1 4203 4203 17.113 15.705 1 1054500 4780 3120 2889 2892 5078 5078 0.073959500831279 AVNEKINRV 9 Unmodified _AVNEKINRV_ 0 0 0 ENSG00000120137|ENST00000239231|PANK3 ENSG00000120137|ENST00000239231|PANK3 ENSG00000120137|ENST00000239231|PANK3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 348.204974 1041.59309 -0.28588 -9.9546E-05 0.3766 0.00013114 0.090719 3.1589E-05 348.2051156029195 23.982 0.30358 23.982 23.863 24.167 0 0.051709 0.00031853 NaN 17.113 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1028000 4781 3120 2889 2892 0.073959500831279 AVNLDVESMLL 11 Unmodified _AVNLDVESMLL_ 0 0 0 ENST00000570311.1_1_17:45126763-45127807:+|nuORF ENST00000570311.1_1_17:45126763-45127807:+|nuORF ENST00000570311.1_1_17:45126763-45127807:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2802124023438 2 602.318114 1202.62167 NaN NaN NaN NaN NaN NaN NaN 93.52 1 89.377 88.877 89.877 -4.1435 0 0 0 0.20718 1 17827 17827 17.113 3.2068 1 4782 11415 2890 2893 5079 5079 0.028468868774098155 AVNLDVESMLL 11 Unmodified _AVNLDVESMLL_ 0 0 0 ENST00000570311.1_1_17:45126763-45127807:+|nuORF ENST00000570311.1_1_17:45126763-45127807:+|nuORF ENST00000570311.1_1_17:45126763-45127807:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2817993164062 2 602.318114 1202.62167 NaN NaN NaN NaN NaN NaN NaN 93.004 1 89.16 88.66 89.66 -3.844 0 0 0 0.20718 1 17826 17826 17.113 0.96379 1 4783 11415 2890 2893 5080 5080 0.028468868774098155 AVNLRHRY 8 Unmodified _AVNLRHRY_ 0 0 0 USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;nc|ENSG00000042781|O75445-2|USH2A;USH2A|p.F1618Lfs*17|1|0.36|ENSG00000042781|chr1:216089044-216089044|A/-|frameshift_variant;USH2A|p.R551Ffs*46|1|0.11|ENSG00000042781|chr1:216292364-216292365|-/ATCACACTAGAACAAAA|frameshift_variant;USH2A|p.V1147Gfs*56|1|0.38|ENSG00000042781|chr1:216199998-216199999|-/C|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 515.2944946289062 2 514.79105 1027.56755 0.31734 0.00016337 -1.0123 -0.00052112 -0.69495 -0.00035775 514.7902813738032 68.526 0.65343 65.136 64.633 65.287 -3.3903 29 18 2 0 0 0 0.72861 1 12966 12966 10.183 2.8942 1 1285700 4784 1204 2891 2894 5081 5081 0.05486520351382751 AVNLRHRY 8 Unmodified _AVNLRHRY_ 0 0 0 USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;nc|ENSG00000042781|O75445-2|USH2A;USH2A|p.F1618Lfs*17|1|0.36|ENSG00000042781|chr1:216089044-216089044|A/-|frameshift_variant;USH2A|p.R551Ffs*46|1|0.11|ENSG00000042781|chr1:216292364-216292365|-/ATCACACTAGAACAAAA|frameshift_variant;USH2A|p.V1147Gfs*56|1|0.38|ENSG00000042781|chr1:216199998-216199999|-/C|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 514.79105 1027.56755 -0.11803 -6.0763E-05 -0.87177 -0.00044878 -0.98981 -0.00050954 514.7904701717237 64.921 0.56331 64.921 64.682 65.246 0 -0.046994 -1.7872E-06 NaN 10.183 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1665900 4785 1204 2891 2894 0.05486520351382751 AVNLRHRY 8 Unmodified _AVNLRHRY_ 0 0 0 USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;nc|ENSG00000042781|O75445-2|USH2A;USH2A|p.F1618Lfs*17|1|0.36|ENSG00000042781|chr1:216089044-216089044|A/-|frameshift_variant;USH2A|p.R551Ffs*46|1|0.11|ENSG00000042781|chr1:216292364-216292365|-/ATCACACTAGAACAAAA|frameshift_variant;USH2A|p.V1147Gfs*56|1|0.38|ENSG00000042781|chr1:216199998-216199999|-/C|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 514.79105 1027.56755 -0.20891 -0.00010754 -0.71831 -0.00036978 -0.92722 -0.00047732 514.7905411780118 67.956 0.58199 64.847 64.421 65.003 -3.1086 -0.12088 0.00015621 NaN 10.183 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1931400 4786 1204 2891 2894 0.05486520351382751 AVPATSHH 8 Unmodified _AVPATSHH_ 0 0 0 ENSG00000168944|ENST00000306467|CEP120;CEP120|p.K738Rfs*29|2|0.21|ENSG00000168944|chr5:123377519-123377519|T/-|frameshift_variant;nc|ENSG00000168944|Q8N960-2|CEP120;CEP120|p.L565*|1|0.38|ENSG00000168944|chr5:123385020-123385020|A/-|frameshift_variant;ENST00000513565.6_1_5:122724091-122725726:-|nuORF ENSG00000168944|ENST00000306467|CEP120 ENSG00000168944|ENST00000306467|CEP120 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 410.1099853515625 2 410.209027 818.403501 NaN NaN NaN NaN NaN NaN NaN 156.77 1 151.49 150.99 151.99 -5.2854 0 0 0 0.21486 1 30417 30417 6.3541 0 1 4787 5953 2892 2895 5082 5082 -0.012964971394012537 AVPAWKRE 8 Unmodified _AVPAWKRE_ 0 0 0 ENSG00000176058|ENST00000409012|TPRN ENSG00000176058|ENST00000409012|TPRN ENSG00000176058|ENST00000409012|TPRN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72161865234375 2 478.769252 955.52395 NaN NaN NaN NaN NaN NaN NaN 152.13 1 152.13 151.63 152.63 0 0 0 0 0.21181 1 30470 30470 15.768 0 1 4788 6445 2893 2896 5083 5083 0.044409108542254216 AVPLSTLGSL 10 Unmodified _AVPLSTLGSL_ 0 0 0 REV__ENST00000540159.3_1_10:133783899-133784124:-|nuORF REV__ENST00000540159.3_1_10:133783899-133784124:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7423400878906 2 479.2844 956.554247 0.14193 6.8024E-05 -0.15311 -7.3381E-05 -0.011178 -5.3577E-06 479.2841926427482 151.61 0.70235 146.37 146.01 146.71 -5.2365 32 19 2 0 0 0 0.61278 1 29444 29444 20.454 2.3073 1 3884600 + 4789 22853 2894 2897 5084 5084 0.0742322472875685 AVPPALPAAL 10 Unmodified _AVPPALPAAL_ 0 0 0 nc|ENSG00000127249|Q4VNC1-3|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;ENSG00000127249|ENST00000342695|ATP13A4 nc|ENSG00000127249|Q4VNC1-3|ATP13A4 nc|ENSG00000127249|Q4VNC1-3|ATP13A4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2467956542969 2 460.284203 918.553853 0.49856 0.00022948 -0.19374 -8.9176E-05 0.30482 0.0001403 460.28399579584345 115.97 2.3937 111.61 110.26 112.66 -4.3585 141 67 3 0 0 0 0.29069 1 22304 22304 32.117 0 1 2561800 4790 3468 2895 2898 5085 5085 0.09131849799553038 AVPPPGPLLLL 11 Unmodified _AVPPPGPLLLL_ 0 0 0 REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1;REV__ENST00000586075.1_2_19:14044750-14048885:-|nuORF REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.783203125 2 543.84971 1085.68487 NaN NaN NaN NaN NaN NaN NaN 132.58 1 127.94 127.44 128.44 -4.6399 0 0 0 0.22632 1 26136 26136 0.11104 0.037778 1 + 4791 16093;23261 2896 2899 5086 5086 0.14545240447637298 AVPRLLLGKK 10 Unmodified _AVPRLLLGKK_ 0 0 0 REV__ENSG00000102981|ENST00000458121|PARD6A REV__ENSG00000102981|ENST00000458121|PARD6A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7867431640625 2 547.874051 1093.73355 NaN NaN NaN NaN NaN NaN NaN 146.98 1 146.98 146.48 147.48 0 0 0 0 2.8426 1 29397 29397 0.0013812 0 1 + 4792 14858 2897 2900 5087 5087 0.19043153807365343 AVPRLLLGKK 10 Unmodified _AVPRLLLGKK_ 0 0 0 REV__ENSG00000102981|ENST00000458121|PARD6A REV__ENSG00000102981|ENST00000458121|PARD6A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.779052734375 2 547.874051 1093.73355 NaN NaN NaN NaN NaN NaN NaN 147 1 147 146.5 147.5 0 0 0 0 2.8426 1 29400 29400 0.0013812 0 1 + 4793 14858 2897 2900 5088 5088 0.19043153807365343 AVPTPHRGSEE 11 Unmodified _AVPTPHRGSEE_ 0 0 0 L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|111|2|anti-sense;nc|ENSG00000178623|Q9HC97-2|GPR35 L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|111|2|anti-sense L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|111|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2752075195312 2 590.291276 1178.568 NaN NaN NaN NaN NaN NaN NaN 153.99 1 148.72 148.22 149.22 -5.2669 0 0 0 0.23324 1 29857 29857 5.7319 1.4026 1 4794 12027 2898 2901 5089 5089 -0.01414149510083007 AVQDEQQNY 9 Unmodified _AVQDEQQNY_ 0 0 0 REV__OLFML2A|p.G596D|1|0.15|ENSG00000185585|chr9:124810240-124810240|G/A|missense_variant REV__OLFML2A|p.G596D|1|0.15|ENSG00000185585|chr9:124810240-124810240|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.788330078125 2 547.741085 1093.46762 0.19527 0.00010696 -0.36412 -0.00019944 -0.16885 -9.2485E-05 547.7407163649153 81.76 1.0342 78.203 77.689 78.723 -3.557 83 29 4 0 0 0 0.59384 1 16012 16012 13.508 1.2672 1 12859000 + 4795 24397 2899 2902 5090 5090 -0.07537806563755112 AVQDEQQNY 9 Unmodified _AVQDEQQNY_ 0 0 0 REV__OLFML2A|p.G596D|1|0.15|ENSG00000185585|chr9:124810240-124810240|G/A|missense_variant REV__OLFML2A|p.G596D|1|0.15|ENSG00000185585|chr9:124810240-124810240|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77197265625 2 547.741085 1093.46762 0.081872 4.4845E-05 -0.34666 -0.00018988 -0.26479 -0.00014504 547.7407490168329 82.122 1.1688 78.249 77.61 78.779 -3.8736 92 33 4 0 0 0 0.59384 1 15589 15589 13.508 0.97634 1 11727000 + 4796 24397 2899 2902 5091 5091 -0.07537806563755112 AVRHLVYLR 9 Unmodified _AVRHLVYLR_ 0 0 0 nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 376.2325744628906 3 376.232975 1125.6771 NaN NaN NaN NaN NaN NaN NaN 126.2 1 121.55 121.05 122.05 -4.6495 0 0 0 0.19657 1 24279 24279 4.897 3.6822 1 4797 6007 2900 2903 5092 5092 0.11928525970688497 AVRQKETV 8 Unmodified _AVRQKETV_ 0 0 0 ENSG00000146410|ENST00000420702|MTFR2 ENSG00000146410|ENST00000420702|MTFR2 ENSG00000146410|ENST00000420702|MTFR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2421569824219 2 465.771991 929.529429 -0.02227 -1.0373E-05 0.077874 3.6272E-05 0.055605 2.5899E-05 465.77202996532606 48.545 0.45793 45.546 45.265 45.723 -2.999 26 12 3 0 0 0 0.57473 1 8845 8845 39.957 0.0076237 1 2344300 4798 4652 2901 2904 5093 5093 0.061845896460340555 AVRQYAEEW 9 Unmodified _AVRQYAEEW_ 0 0 0 REV__ENST00000496676.5_1_1:6272096-6272816:+|nuORF REV__ENST00000496676.5_1_1:6272096-6272816:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.31787109375 2 576.277638 1150.54072 NaN NaN NaN NaN NaN NaN NaN 169.94 1 169.94 169.44 170.44 0 0 0 0 0.23508 1 34907 34907 7.2892 0.56607 1 + 4799 17330 2902 2905 5094 5094 -0.028526330504973885 AVRRIKAAPL 10 Unmodified _AVRRIKAAPL_ 0 0 0 ENST00000374012.7_1_20:34359909-34389461:+|nuORF ENST00000374012.7_1_20:34359909-34389461:+|nuORF ENST00000374012.7_1_20:34359909-34389461:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7900390625 2 547.861475 1093.7084 NaN NaN NaN NaN NaN NaN NaN 143.48 1 138.46 137.96 138.96 -5.0261 0 0 0 0.22588 1 27661 27661 4.3292 0 1 4800 9212 2903 2906 5095 5095 0.16529099004765158 AVRTMFGF 8 Unmodified _AVRTMFGF_ 0 0 0 REV__ENST00000493961.5_1_10:72642146-72645644:-|nuORF REV__ENST00000493961.5_1_10:72642146-72645644:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25177001953125 2 464.739105 927.463658 -0.02779 -1.2915E-05 2.0591 0.00095694 2.0313 0.00094403 464.74006698050044 48.157 0.31488 45.215 45.11 45.425 -2.9421 11 8 2 0 0 0 0.89276 1 8817 8817 0.12286 0 1 283010 + 4801 22358 2904 2907 5096 5096 -0.0029752280050843183 AVRTRAAWL 9 Unmodified _AVRTRAAWL_ 0 0 0 REV__ENST00000454190.6_2_3:9956219-9957488:+|nuORF REV__ENST00000454190.6_2_3:9956219-9957488:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2577514648438 2 522.309075 1042.6036 -0.0046029 -2.4042E-06 0.37656 0.00019668 0.37196 0.00019428 522.3090938818826 122.56 0.63148 118.01 117.71 118.34 -4.5476 40 17 3 0 0 0 0.64382 1 24114 24114 10.074 0 1 2693900 + 4802 17603 2905 2908 5097 5097 0.08399977528210911 AVSAEIYY 8 Unmodified _AVSAEIYY_ 0 0 0 REV__ENSG00000101605|ENST00000356443|MYOM1 REV__ENSG00000101605|ENST00000356443|MYOM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2286376953125 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 132.61 1 132.61 132.11 133.11 0 0 0 0 0.22666 1 26220 26220 1.7423 1.3627 1 + 4803 14795 2906 2909 5098 5098 -0.022092991221143166 AVSDHISKV 9 Unmodified _AVSDHISKV_ 0 0 0 ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B;FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant ENSG00000112584|ENST00000476287|FAM120B ENSG00000112584|ENST00000476287|FAM120B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7250671386719 2 478.263999 954.513445 -0.033459 -1.6002E-05 -0.1709 -8.1737E-05 -0.20436 -9.7739E-05 478.2638668444081 28.393 0.41381 28.393 28.147 28.561 0 20 11 2 0 0 0 0.22356 1 5046 5046 49.527 26.791 1 3761300 4804 2700 2907 2910 5099 5099 0.03436883409131042 AVSDHISKV 9 Unmodified _AVSDHISKV_ 0 0 0 ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B;FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant ENSG00000112584|ENST00000476287|FAM120B ENSG00000112584|ENST00000476287|FAM120B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7251281738281 2 478.263999 954.513445 0.48651 0.00023268 -0.6943 -0.00033206 -0.2078 -9.9382E-05 478.2636472858554 30.369 0.46026 28.252 27.975 28.435 -2.1167 23 12 2 0 0 0 0.1155 1 5475 5475 71.708 23.959 1 3638600 4805 2700 2907 2910 5100 5100 0.03436883409131042 AVSDHISKV 9 Unmodified _AVSDHISKV_ 0 0 0 ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B;FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant ENSG00000112584|ENST00000476287|FAM120B ENSG00000112584|ENST00000476287|FAM120B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7376403808594 2 478.263999 954.513445 0.3232 0.00015457 -0.56603 -0.00027071 -0.24284 -0.00011614 478.26367399443967 30.222 0.45538 28.329 28.101 28.556 -1.8928 22 12 2 0 0 0 0.069179 2 5195 5195;5197 61.09 41.099 1 5271900 4806 2700 2907 2910 5101;5102 5101 0.03436883409131042 AVSDHISKV 9 Unmodified _AVSDHISKV_ 0 0 0 ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B;FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant ENSG00000112584|ENST00000476287|FAM120B ENSG00000112584|ENST00000476287|FAM120B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.263999 954.513445 0.55152 0.00026377 -0.71018 -0.00033966 -0.15867 -7.5885E-05 478.2636344498062 30.372 0.49636 28.298 28.074 28.571 -2.0743 -0.019942 -0.00016389 NaN 61.09 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3269200 4807 2700 2907 2910 0.03436883409131042 AVSDKTSVAP 10 Unmodified _AVSDKTSVAP_ 0 0 0 REV__ENSG00000260903|ENST00000562532|XKR7 REV__ENSG00000260903|ENST00000562532|XKR7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.266845703125 2 487.761289 973.508025 0.33795 0.00016484 -0.19277 -9.4026E-05 0.14518 7.0813E-05 487.76202154045313 40.55 3.361 40.55 40.208 43.569 0 290 95 6 0 0 0 0.42569 2 7533 7533;7592 29.082 0.58707 1 3347699999.9999995 + 4808 19884 2908 2911 5103;5104 5103 0.02021159826665553 AVSDKTSVAP 10 Unmodified _AVSDKTSVAP_ 0 0 0 REV__ENSG00000260903|ENST00000562532|XKR7 REV__ENSG00000260903|ENST00000562532|XKR7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26641845703125 2 487.761289 973.508025 0.032678 1.5939E-05 0.1651 8.053E-05 0.19778 9.6469E-05 487.76218728943354 43.13 4.7646 40.411 40.092 44.856 -2.7191 375 135 6 0 0 0 0.42569 1 8123 8123 29.082 2.8134 1 4606900000 + 4809 19884 2908 2911 5105 5105 0.02021159826665553 AVSDKTSVAP 10 Unmodified _AVSDKTSVAP_ 0 0 0 REV__ENSG00000260903|ENST00000562532|XKR7 REV__ENSG00000260903|ENST00000562532|XKR7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.266845703125 2 487.761289 973.508025 -0.2824 -0.00013775 0.42481 0.0002072 0.1424 6.946E-05 487.76235588978847 43.109 4.8749 40.503 40.142 45.017 -2.606 439 139 6 0 0 0 0.32088 1 7814 7814 36.127 8.4982 1 3396799999.9999995 + 4810 19884 2908 2911 5106 5106 0.02021159826665553 AVSDKTSVAP 10 Unmodified _AVSDKTSVAP_ 0 0 0 REV__ENSG00000260903|ENST00000562532|XKR7 REV__ENSG00000260903|ENST00000562532|XKR7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 487.761289 973.508025 0.032678 1.5939E-05 0.1651 8.053E-05 0.19778 9.6469E-05 487.76218728943354 43.13 4.7646 40.411 40.092 44.856 -2.7191 -0.058834 2.1418E-05 NaN 36.127 375 135 6 NaN NaN NaN NaN 0 NaN NaN 0 4606900000 + 4811 19884 2908 2911 0.02021159826665553 AVSEGNLLL 9 Unmodified _AVSEGNLLL_ 0 0 0 nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2335510253906 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 87.435 1 83.708 83.208 84.208 -3.727 0 0 0 0.21065 1 17097 17097 20.454 5.6154 1 4812 3421 2909 2912 5107 5107 0.046623651776371844 AVSEKIPTA 9 Unmodified _AVSEKIPTA_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF;nc|ENSG00000166473|Q7Z442-6|PKD1L2;ENST00000299598.11_1_16:81199358-81222588:-|nuORF;nc|ENSG00000166473|Q7Z442-3|PKD1L2;nc|ENSG00000166473|Q7Z442-4|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-3|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23516845703125 2 458.260925 914.507297 0.027409 1.256E-05 3.3061 0.0015151 3.3335 0.0015276 458.2609288504408 58.435 1.2281 55.184 54.65 55.878 -3.2517 105 34 5 0 0 0 0.44262 1 10864 10864 23.148 2.6948 1 10310000 4813 12440;12439 2910 2913 5108 5108 0.04662365177603078 AVSEVSVF 8 Unmodified _AVSEVSVF_ 0 0 0 ENST00000523401.5_1_8:67624996-67705900:+|nuORF ENST00000523401.5_1_8:67624996-67705900:+|nuORF ENST00000523401.5_1_8:67624996-67705900:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4708862304688 1 837.435261 836.427984 0.38445 0.00032195 0.059095 4.9488E-05 0.44354 0.00037144 837.4352301520403 153.76 0.93839 148.5 148.06 148.99 -5.2669 57 26 3 0 0 0 8448 1 29817 29817 0.68139 0.42991 1 18798000 4814 10870 2911 2914 5109 5109 0.0032271822348093337 AVSFPGQEA 9 Unmodified _AVSFPGQEA_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;ENST00000586052.5_1_17:76475094-76487566:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7653503417969 2 453.2218 904.429047 -0.10765 -4.8791E-05 0.90695 0.00041105 0.7993 0.00036226 453.2222900509032 41.795 0.77787 39.144 38.687 39.464 -2.651 44 21 3 0 0 0 0.44932 1 7480 7480 22.736 0 1 2857900 4815 7127 2912 2915 5110 5110 -0.02699067407615985 AVSGGFVAAH 10 Unmodified _AVSGGFVAAH_ 0 0 0 REV__ENSG00000184389|ENST00000442999|A3GALT2 REV__ENSG00000184389|ENST00000442999|A3GALT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2385559082031 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 68.368 1 64.832 64.332 65.332 -3.5362 0 0 0 0.22576 1 12847 12847 14.838 0.93222 1 + 4816 18895 2913 2916 5111 5111 0.00036345066178000707 AVSIGFLASV 10 Unmodified _AVSIGFLASV_ 0 0 0 ENSG00000205269|ENST00000379426|TMEM170B ENSG00000205269|ENST00000379426|TMEM170B ENSG00000205269|ENST00000379426|TMEM170B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78448486328125 2 482.279118 962.543683 0.35434 0.00017089 -0.22318 -0.00010763 0.13116 6.3257E-05 482.27892872740495 104.08 0.83414 104.08 103.58 104.41 0 57 23 3 0 0 0 0.23855 1 20413 20413 47.749 0 1 14826000 4817 7637 2914 2917 5112 5112 0.06091242074330694 AVSLHFPC 8 Unmodified _AVSLHFPC_ 0 0 0 REV__ENSG00000146223|ENST00000493763|RPL7L1 REV__ENSG00000146223|ENST00000493763|RPL7L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21490478515625 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 94.957 1 94.957 94.457 95.457 0 0 0 0 0.20568 1 18599 18599 20.871 1.4322 1 + 4818 16877 2915 2918 5113 5113 -0.019854982088986617 AVSLHFPC 8 Unmodified _AVSLHFPC_ 0 0 0 REV__ENSG00000146223|ENST00000493763|RPL7L1 REV__ENSG00000146223|ENST00000493763|RPL7L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2165222167969 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 98.822 1 94.553 94.053 95.053 -4.2692 0 0 0 0.20568 1 18892 18892 20.871 1.4322 1 + 4819 16877 2915 2918 5114 5114 -0.019854982088986617 AVSLHFPC 8 Unmodified _AVSLHFPC_ 0 0 0 REV__ENSG00000146223|ENST00000493763|RPL7L1 REV__ENSG00000146223|ENST00000493763|RPL7L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.236328125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 98.906 1 94.637 94.137 95.137 -4.2692 0 0 0 0.20568 1 18910 18910 20.871 1.4322 1 + 4820 16877 2915 2918 5115 5115 -0.019854982088986617 AVSLHFPC 8 Unmodified _AVSLHFPC_ 0 0 0 REV__ENSG00000146223|ENST00000493763|RPL7L1 REV__ENSG00000146223|ENST00000493763|RPL7L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2154541015625 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 99.089 1 94.82 94.32 95.32 -4.2692 0 0 0 0.20568 1 18943 18943 20.871 1.4322 1 + 4821 16877 2915 2918 5116 5116 -0.019854982088986617 AVSLHFPC 8 Unmodified _AVSLHFPC_ 0 0 0 REV__ENSG00000146223|ENST00000493763|RPL7L1 REV__ENSG00000146223|ENST00000493763|RPL7L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2358093261719 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 98.732 1 94.776 94.276 95.276 -3.9564 0 0 0 0.20568 1 18951 18951 20.871 1.4322 1 + 4822 16877 2915 2918 5117 5117 -0.019854982088986617 AVSLHFPC 8 Unmodified _AVSLHFPC_ 0 0 0 REV__ENSG00000146223|ENST00000493763|RPL7L1 REV__ENSG00000146223|ENST00000493763|RPL7L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21661376953125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 99.001 1 95.044 94.544 95.544 -3.9564 0 0 0 0.20568 1 19003 19003 20.871 1.4322 1 + 4823 16877 2915 2918 5118 5118 -0.019854982088986617 AVSLSKMLKKR 11 Unmodified _AVSLSKMLKKR_ 0 0 0 ENSG00000163599|ENST00000648405|CTLA4 ENSG00000163599|ENST00000648405|CTLA4 ENSG00000163599|ENST00000648405|CTLA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7733154296875 2 630.894657 1259.77476 NaN NaN NaN NaN NaN NaN NaN 157.86 1 152.59 152.09 153.09 -5.2712 0 0 0 0.23634 1 30623 30623 3.2813 0.28607 1 4824 5443 2916 2919 5119 5119 0.15526546784531092 AVSMHDCYTHP 11 Unmodified _AVSMHDCYTHP_ 0 0 0 REV__OR52N4|p.L189Ifs*5|1|0.33|ENSG00000181074|chr11:5755301-5755302|-/A|frameshift_variant REV__OR52N4|p.L189Ifs*5|1|0.33|ENSG00000181074|chr11:5755301-5755302|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7557373046875 2 630.76044 1259.50633 NaN NaN NaN NaN NaN NaN NaN 128.73 1 123.92 123.42 124.42 -4.817 0 0 0 0.22862 1 24711 24711 9.3831 0 1 + 4825 18709 2917 2920 5120 5120 -0.1130454052524783 AVSQVEAAV 9 Unmodified _AVSQVEAAV_ 0 0 0 ENST00000489369.5_1_9:676972-732786:+|nuORF;ENSG00000107104|ENST00000382297|KANK1;nc|ENSG00000107104|Q14678-2|KANK1;ENST00000354485.5_1_9:676972-730286:+|nuORF ENST00000489369.5_1_9:676972-732786:+|nuORF ENST00000489369.5_1_9:676972-732786:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2204284667969 2 437.23745 872.460347 0.22252 9.7293E-05 -0.1033 -4.5167E-05 0.11922 5.2126E-05 437.23731951731617 26.88 0.51555 26.88 26.635 27.15 0 22 14 2 0 0 0 0.11717 1 4729 4729 49.933 6.0747 1 1110800 4826 2413 2918 2921 5121 5121 0.019015056264720442 AVSQVEAAV 9 Unmodified _AVSQVEAAV_ 0 0 0 ENST00000489369.5_1_9:676972-732786:+|nuORF;ENSG00000107104|ENST00000382297|KANK1;nc|ENSG00000107104|Q14678-2|KANK1;ENST00000354485.5_1_9:676972-730286:+|nuORF ENST00000489369.5_1_9:676972-732786:+|nuORF ENST00000489369.5_1_9:676972-732786:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 437.23745 872.460347 0.62308 0.00027243 -0.41507 -0.00018149 0.20801 9.0948E-05 437.23702642036676 28.524 0.79011 26.568 26.364 27.154 -1.9561 -0.10629 -0.00020834 NaN 49.933 30 22 2 NaN NaN NaN NaN 0 NaN NaN 0 520660 4827 2413 2918 2921 0.019015056264720442 AVSRVIKLQH 10 Unmodified _AVSRVIKLQH_ 0 0 0 nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3116455078125 2 575.85639 1149.69823 0.4753 0.00027371 -2.1014 -0.0012101 -1.6261 -0.00093642 576.3590992863273 162.79 0.10684 157.6 157.53 157.63 -5.1878 4 2 2 0 0 0 0.73842 1 31628 31628 7.2892 0.56607 1 3352400 4828 2144 2919 2922 5122 5122 0.12936491279538131 AVSSGKNG 8 Unmodified _AVSSGKNG_ 0 0 0 REV__tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1 REV__tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2096862792969 2 360.18776 718.360967 NaN NaN NaN NaN NaN NaN NaN 44.919 1 44.919 44.419 45.419 0 0 0 0 0.23664 1 8434 8434 3.2813 3.1584 1 + 4829 25313 2920 2923 5123 5123 -0.009478922676180446 AVSVFARV 8 Unmodified _AVSVFARV_ 0 0 0 ENST00000252506.10_1_9:92219960-92220011:+|nuORF ENST00000252506.10_1_9:92219960-92220011:+|nuORF ENST00000252506.10_1_9:92219960-92220011:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2551574707031 2 424.75307 847.491587 -0.36247 -0.00015396 0.64554 0.0002742 0.28307 0.00012023 424.75329907360555 48.195 0.5589 45.245 44.982 45.541 -2.9499 23 15 2 0 0 0 0.49114 1 8799 8799 28.487 2.1456 1 735530 4830 8224 2921 2924 5124 5124 0.06174123451239666 AVSYGLFY 8 Unmodified _AVSYGLFY_ 0 0 0 REV__ENST00000592226.5_1_17:42458037-42462568:-|nuORF REV__ENST00000592226.5_1_17:42458037-42462568:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23046875 2 460.231636 918.448719 NaN NaN NaN NaN NaN NaN NaN 50.118 1 50.118 49.618 50.618 0 0 0 0 0.21486 1 9486 9486 11.114 0.29054 1 + 4831 23348 2922 2925 5125 5125 -0.013766913968652261 AVSYRTQH 8 Unmodified _AVSYRTQH_ 0 0 0 ENSG00000134489|ENST00000256906|HRH4 ENSG00000134489|ENST00000256906|HRH4 ENSG00000134489|ENST00000256906|HRH4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24493408203125 2 481.246141 960.477728 -0.092127 -4.4336E-05 -1.5665 -0.00075388 -1.6587 -0.00079822 481.24499023692965 78.767 0.59064 75.091 74.851 75.442 -3.676 19 16 2 0 0 0 8448 1 15023 15023 0.62683 0 1 735360 4832 3856 2923 2926 5126 5126 -0.0040915404786119325 AVTILHRTVLG 11 Unmodified _AVTILHRTVLG_ 0 0 0 ENST00000392038.6_1_19:40738806-40739223:-|nuORF ENST00000392038.6_1_19:40738806-40739223:-|nuORF ENST00000392038.6_1_19:40738806-40739223:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2611694335938 2 590.364047 1178.71354 NaN NaN NaN NaN NaN NaN NaN 94.245 1 90.254 89.754 90.754 -3.9907 0 0 0 0.23199 1 18465 18465 6.7232 0 1 4833 9367 2924 2927 5127 5127 0.13133358076743207 AVTSSVAIVI 10 Unmodified _AVTSSVAIVI_ 0 0 0 REV__ENSG00000141434|ENST00000269202|MEP1B REV__ENSG00000141434|ENST00000269202|MEP1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25457763671875 2 480.292225 958.569897 -0.11504 -5.5254E-05 0.29599 0.00014216 0.18095 8.6907E-05 480.29231263130293 87.662 0.76243 87.662 87.362 88.125 0 40 21 3 0 0 0 0.37773 1 17131 17131 32.305 1.6689 1 4576200 + 4834 16625 2925 2928 5128 5128 0.08895511245816579 AVVAAAAEAAA 11 Unmodified _AVVAAAAEAAA_ 0 0 0 REV__nc|ENSG00000196504|O75400-3|PRPF40A REV__nc|ENSG00000196504|O75400-3|PRPF40A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.239013671875 2 457.750724 913.486896 -0.22296 -0.00010206 0.17063 7.8106E-05 -0.052335 -2.3956E-05 457.75079226002873 71.15 0.42614 67.901 67.635 68.062 -3.2492 26 11 3 0 0 0 0.35757 1 13848 13848 48.346 4.5735 1 3142100 + 4835 24227 2926 2929 5129 5129 0.0266919451778449 AVVQWKFKSYC 11 Unmodified _AVVQWKFKSYC_ 0 0 0 ENSG00000143195|ENST00000271417|ILDR2;ILDR2|p.N157Mfs*117|1|0.23|ENSG00000143195|chr1:166956762-166956762|T/-|frameshift_variant ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.74761962890625 3 453.569036 1357.68528 0.40918 0.00018559 -2.6303 -0.001193 -2.2211 -0.0010074 453.5683118361197 50.775 0.55052 50.775 50.471 51.022 0 32 15 3 0 0 0 0.96033 1 9636 9636 6.6235 0 1 1298400 4836 4462 2927 2930 5130 5130 0.020742921051578378 AVVSAHCPGA 10 Unmodified _AVVSAHCPGA_ 0 0 0 ENST00000343605.4_1_22:31031856-31032117:+|nuORF ENST00000343605.4_1_22:31031856-31032117:+|nuORF ENST00000343605.4_1_22:31031856-31032117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 456.22198486328125 2 456.22382 910.433086 NaN NaN NaN NaN NaN NaN NaN 79.414 1 75.738 75.238 76.238 -3.676 0 0 0 2.8426 1 15130 15130 0.063865 0 1 4837 8879 2928 2931 5131 5131 -0.025713011855600598 AVVSSAEIW 9 Unmodified _AVVSSAEIW_ 0 0 0 tr|U7T2E3|U7T2E3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00419PE=4SV=1 tr|U7T2E3|U7T2E3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00419PE=4SV=1 tr|U7T2E3|U7T2E3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00419PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2532653808594 2 481.2531 960.491647 -0.31618 -0.00015216 0.59471 0.00028621 0.27854 0.00013405 481.253289248104 62.129 1.0714 62.129 61.768 62.839 0 55 30 3 0 0 0 0.28819 2 11921 11921;11974 32.305 4.6767 1 4036100 4838 26359 2929 2932 5132;5133 5132 0.00982078660570096 AVVSSAEIW 9 Unmodified _AVVSSAEIW_ 0 0 0 tr|U7T2E3|U7T2E3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00419PE=4SV=1 tr|U7T2E3|U7T2E3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00419PE=4SV=1 tr|U7T2E3|U7T2E3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00419PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2529602050781 2 481.2531 960.491647 0.054447 2.6203E-05 0.44289 0.00021314 0.49734 0.00023935 481.2532559292357 65.088 1.1882 62.041 61.522 62.71 -3.047 72 34 3 0 0 0 0.25702 2 12611 12611;12634 34.102 3.4659 1 3888300 4839 26359 2929 2932 5134;5135 5134 0.00982078660570096 AVWKESFQV 9 Unmodified _AVWKESFQV_ 0 0 0 FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant;FANCB|p.I419Tfs*9|1|0.08|ENSG00000181544|chrX:14853109-14853110|-/AG|frameshift_variant;ENSG00000181544|ENST00000650831|FANCB FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7886352539062 2 547.287474 1092.5604 0.32153 0.00017597 -0.58199 -0.00031851 -0.26046 -0.00014255 547.2873142223596 119.05 0.31915 119.05 118.78 119.1 0 12 8 2 0 0 0 0.16619 2 23447 23447;23454 41.84 3.8656 1 817880 4840 6727 2930 2933 5136;5137 5136 0.01781742960270094 AVWKESFQV 9 Unmodified _AVWKESFQV_ 0 0 0 FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant;FANCB|p.I419Tfs*9|1|0.08|ENSG00000181544|chrX:14853109-14853110|-/AG|frameshift_variant;ENSG00000181544|ENST00000650831|FANCB FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7879638671875 2 547.287474 1092.5604 0.46766 0.00025595 0.38772 0.0002122 0.85539 0.00046814 547.7891314958309 123.57 0.39561 118.83 118.74 119.14 -4.731 18 10 2 0 0 0 0.19171 1 23764 23764 38.176 7.539 1 2253300 4841 6727 2930 2933 5138 5138 0.01781742960270094 AVWKESFQV 9 Unmodified _AVWKESFQV_ 0 0 0 FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant;FANCB|p.I419Tfs*9|1|0.08|ENSG00000181544|chrX:14853109-14853110|-/AG|frameshift_variant;ENSG00000181544|ENST00000650831|FANCB FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7883911132812 2 547.287474 1092.5604 0.35183 0.00019255 -0.47618 -0.00026061 -0.12435 -6.8056E-05 547.2874330596615 123.5 0.40942 118.91 118.69 119.1 -4.5926 22 11 3 0 0 0 0.15274 2 23757 23757;23794 43.772 15.929 1 1832400 4842 6727 2930 2933 5139;5140 5139 0.01781742960270094 AVYFIARKIRK 11 Unmodified _AVYFIARKIRK_ 0 0 0 ENSG00000118298|ENST00000369111|CA14 ENSG00000118298|ENST00000369111|CA14 ENSG00000118298|ENST00000369111|CA14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 682.9305419921875 2 682.929889 1363.84522 NaN NaN NaN NaN NaN NaN NaN 68.083 1 64.975 64.475 65.475 -3.1086 0 0 0 0.23594 1 13216 13216 3.5965 0 1 4843 3026 2931 2934 5141 5141 0.17785588164474575 AVYFTQEEWRL 11 Unmodified _AVYFTQEEWRL_ 0 0 0 ENSG00000181666|ENST00000392153|ZNF875;nc|ENSG00000181666|P10072|ZNF875 ENSG00000181666|ENST00000392153|ZNF875 ENSG00000181666|ENST00000392153|ZNF875 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2420654296875 3 481.241865 1440.70376 NaN NaN NaN NaN NaN NaN NaN 103.38 1 103.38 102.88 103.88 0 0 0 0 0.22632 1 20313 20313 0.58532 0 1 4844 6734 2932 2935 5142 5142 0.0010412528069991822 AVYPHYGL 8 Unmodified _AVYPHYGL_ 0 0 0 REV__IRX5|p.A103V|1|0.44|ENSG00000176842|chr16:54932556-54932556|C/T|missense_variant REV__IRX5|p.A103V|1|0.44|ENSG00000176842|chr16:54932556-54932556|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2378845214844 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 74.029 1 70.352 69.852 70.852 -3.6764 0 0 0 0.22722 1 13999 13999 0.68139 0.47406 1 + 4845 23676 2933 2936 5143 5143 -0.002538693027190675 AVYPNWGL 8 Unmodified _AVYPNWGL_ 0 0 0 REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.239013671875 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 73.841 1 70.247 69.747 70.747 -3.594 0 0 0 0.22676 1 14018 14018 0.68139 0.3018 1 + 4846 13707 2934 2937 5144 5144 -0.002538693027190675 AVYRDDLK 8 Unmodified _AVYRDDLK_ 0 0 0 ENSG00000143546|ENST00000368733|S100A8 ENSG00000143546|ENST00000368733|S100A8 ENSG00000143546|ENST00000368733|S100A8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2626037597656 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 80.076 1 76.4 75.9 76.9 -3.676 0 0 0 0.19342 1 15260 15260 26.884 1.4843 1 4847 4502 2935 2938 5145 5145 0.023328834091216777 AVYRQETL 8 Unmodified _AVYRQETL_ 0 0 0 REV__ENST00000530992.1_1_17:32364642-32365872:-|nuORF REV__ENST00000530992.1_1_17:32364642-32365872:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2645568847656 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 91.044 1 86.949 86.449 87.449 -4.0946 0 0 0 0.22934 1 17347 17347 0.12286 0 1 + 4848 16908 2936 2939 5146 5146 0.023328834091330464 AVYTPLGSI 9 Unmodified _AVYTPLGSI_ 0 0 0 REV__ENSG00000095464|ENST00000371447|PDE6C REV__ENSG00000095464|ENST00000371447|PDE6C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23236083984375 2 460.758018 919.501483 0.24552 0.00011312 0.24004 0.0001106 0.48556 0.00022372 460.7580104304777 97.257 0.59375 97.257 96.979 97.573 0 25 16 2 0 0 0 0.55758 1 19010 19010 12.532 8.2023 1 1398100 + 4849 14609 2937 2940 5147 5147 0.038512666659471506 AVYTPLGSI 9 Unmodified _AVYTPLGSI_ 0 0 0 REV__ENSG00000095464|ENST00000371447|PDE6C REV__ENSG00000095464|ENST00000371447|PDE6C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.758018 919.501483 0.25813 0.00011894 -0.057462 -2.6476E-05 0.20067 9.246E-05 460.7579708306941 101.14 0.7071 96.848 96.505 97.212 -4.297 -0.18219 -0.00013954 NaN 12.532 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1484400 + 4850 14609 2937 2940 0.038512666659471506 AVYTYQAL 8 Unmodified _AVYTYQAL_ 0 0 0 REV__ENSG00000075643|ENST00000261326|MOCOS REV__ENSG00000075643|ENST00000261326|MOCOS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646423339844 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 79.667 1 75.862 75.362 76.362 -3.8048 0 0 0 0.23182 1 15117 15117 0.063987 0 1 + 4851 14335 2938 2941 5148 5148 0.003546936318457483 AWCWRWRWRWR 11 Unmodified _AWCWRWRWRWR_ 0 0 0 SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2316589355469 4 437.721744 1746.85787 -0.74209 -0.00032483 -0.91698 -0.00040138 -1.6591 -0.00072621 438.2228165173608 15.203 0.17639 14.089 13.99 14.167 -1.1142 8 4 3 0 0 0 0.89134 1 2337 2337 0.094841 0.094841 1 383730 4852 25700 2939 2942 5149 5149 0.014317210757326393 AWCWRWRWRWR 11 Unmodified _AWCWRWRWRWR_ 0 0 0 SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 437.721744 1746.85787 -1.7796 -0.00077896 0.54015 0.00023644 -1.2394 -0.00054252 437.7222673997443 15.313 0.14021 13.96 13.854 13.994 -1.3534 -0.06419 0.0025269 NaN 0.094841 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 177700 4853 25700 2939 2942 0.014317210757326393 AWFHEDPSY 9 Unmodified _AWFHEDPSY_ 0 0 0 REV__ENSG00000176928|ENST00000652361|GCNT4 REV__ENSG00000176928|ENST00000652361|GCNT4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.333984375 2 576.243264 1150.47197 NaN NaN NaN NaN NaN NaN NaN 70.283 1 70.283 69.783 70.783 0 0 0 0 0.23508 1 13611 13611 4.3292 0 1 + 4854 18528 2940 2943 5150 5150 -0.09724297350180677 AWGCIFPY 8 Unmodified _AWGCIFPY_ 0 0 0 REV__chr2:131688303-131722417|466|15.72|0.0|20.58|+|2|C2orf27A,NBEAP2|1 REV__chr2:131688303-131722417|466|15.72|0.0|20.58|+|2|C2orf27A,NBEAP2|1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.722412109375 2 478.720381 955.42621 NaN NaN NaN NaN NaN NaN NaN 13.011 1 11.89 11.39 12.39 -1.1206 0 0 0 0.21486 1 1603 1603 0.79363 0 1 + 4855 13422 2941 2944 5151 5151 -0.05328614066127102 AWGPPPPPP 9 Unmodified _AWGPPPPPP_ 0 0 0 REV__ENST00000337195.9_1_10:126799639-126848972:-|nuORF REV__ENST00000337195.9_1_10:126799639-126848972:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2238464355469 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 106.24 1 101.97 101.47 102.47 -4.2638 0 0 0 0.1902 1 20909 20909 4.7159 2.9736 1 + 4856 20673 2942 2945 5152 5152 0.004384345598964501 AWITEITQ 8 Unmodified _AWITEITQ_ 0 0 0 REV__ENST00000537298.5_1_12:65952522-65981187:-|nuORF REV__ENST00000537298.5_1_12:65952522-65981187:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2366027832031 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 20.153 1 18.828 18.328 19.328 -1.3251 0 0 0 0.23811 1 3114 3114 0.12286 0 1 + 4857 22822 2943 2946 5153 5153 0.00982078660570096 AWPVSCTLNRY 11 Unmodified _AWPVSCTLNRY_ 0 0 0 REV__SIGLEC8|p.S170Y|1|0.14|ENSG00000105366|chr19:51457685-51457685|G/T|missense_variant REV__SIGLEC8|p.S170Y|1|0.14|ENSG00000105366|chr19:51457685-51457685|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2190246582031 3 437.216774 1308.62849 -0.08906 -3.8938E-05 0.41502 0.00018145 0.32596 0.00014252 437.5507578180542 41.59 1.4409 38.939 38.166 39.607 -2.651 71 40 5 0 0 0 0.72109 1 7588 7588 10.315 0 1 2971600 + 4858 24618 2944 2947 5154 5154 -0.013477554513656287 AWQKLCSAH 9 Unmodified _AWQKLCSAH_ 0 0 0 nc|ENSG00000171793|P17812-2|CTPS1;CTPS1|p.D577*|1|0.1|ENSG00000171793|chr1:41010192-41010193|-/C|frameshift_variant;ENSG00000171793|ENST00000650070|CTPS1;ENST00000463285.5_1_1:41461708-41469783:+|nuORF nc|ENSG00000171793|P17812-2|CTPS1 nc|ENSG00000171793|P17812-2|CTPS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2589721679688 2 522.258194 1042.50183 0.54176 0.00028294 -0.31834 -0.00016626 0.22342 0.00011668 522.759407421578 103.82 0.42467 103.82 103.58 104 0 20 11 3 0 0 0 0.55979 1 20381 20381 15.847 1.0089 1 1996900 4859 750 2945 2948 5155 5155 -0.017716368858600617 AWRDYTRFQKL 11 Unmodified _AWRDYTRFQKL_ 0 0 0 nc|ENSG00000163617|Q8NCU4-2|CCDC191;ENST00000460813.5_1_3:113723412-113755878:-|nuORF;ENSG00000163617|ENST00000295878|CCDC191 nc|ENSG00000163617|Q8NCU4-2|CCDC191 nc|ENSG00000163617|Q8NCU4-2|CCDC191 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3943481445312 2 742.393867 1482.77318 NaN NaN NaN NaN NaN NaN NaN 94.772 1 90.723 90.223 91.223 -4.0496 0 0 0 0.2367 1 18572 18572 2.9952 0.26005 1 4860 5446 2946 2949 5156 5156 0.05110629020100532 AWRPSGIPEK 10 Unmodified _AWRPSGIPEK_ 0 0 0 ENST00000606952.5_1_1:156203463-156206310:+|nuORF;nc|ENSG00000160783|Q6P1K2-4|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-2|PMF1 ENST00000606952.5_1_1:156203463-156206310:+|nuORF ENST00000606952.5_1_1:156203463-156206310:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.209228515625 3 380.876857 1139.60874 -2.247 -0.00085581 -1.0194 -0.00038828 -3.2664 -0.0012441 380.8764664982419 15.676 0.37999 14.323 14.166 14.546 -1.3534 23 10 4 0 0 0 0.75212 1 2209 2209 5.0475 1.2016 1 3235900 4861 5267 2947 2950 5157 5157 0.04452236600195647 AWRRRRRHQRS 11 Unmodified _AWRRRRRHQRS_ 0 0 0 ENST00000439096.2_1_19:47734314-47734437:-|nuORF ENST00000439096.2_1_19:47734314-47734437:-|nuORF ENST00000439096.2_1_19:47734314-47734437:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2686767578125 3 522.301668 1563.88318 0.41193 0.00021515 4.0607 0.0021209 4.4726 0.0023361 522.6387236400167 151.07 0.14487 145.89 145.78 145.93 -5.1759 5 3 2 0 0 0 0.81642 1 29279 29279 1.4551 0.34536 1 785290 4862 9869 2948 2951 5158 5158 0.12378911922519364 AWSLGPTPS 9 Unmodified _AWSLGPTPS_ 0 0 0 ENST00000563642.6_1_16:1495787-1496063:-|nuORF ENST00000563642.6_1_16:1495787-1496063:-|nuORF ENST00000563642.6_1_16:1495787-1496063:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2313537597656 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 54.581 1 51.446 50.946 51.946 -3.1352 0 0 0 0.19649 1 10074 10074 0.40827 0 1 4863 11337 2949 2952 5159 5159 -0.01086477027968158 AWSQHAPG 8 Unmodified _AWSQHAPG_ 0 0 0 REV__ENST00000356387.6_1_7:102087640-102088213:+|nuORF REV__ENST00000356387.6_1_7:102087640-102088213:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.2022399902344 2 427.201202 852.387851 NaN NaN NaN NaN NaN NaN NaN 29.654 1 27.761 27.261 28.261 -1.8928 0 0 0 0.23107 1 5053 5053 0.62683 0 1 + 4864 20811 2950 2953 5160 5160 -0.04424783656429554 AWSRHGCL 8 Unmodified _AWSRHGCL_ 0 0 0 REV__ENST00000588360.1_1_19:11471945-11474676:+|nuORF REV__ENST00000588360.1_1_19:11471945-11474676:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.241943359375 2 465.224154 928.433755 NaN NaN NaN NaN NaN NaN NaN 112.94 1 112.94 112.44 113.44 0 0 0 0 0.23711 1 22209 22209 0.62683 0.61855 1 + 4865 23294 2951 2954 5161 5161 -0.03332461745856108 AWYIVDSLQ 9 Unmodified _AWYIVDSLQ_ 0 0 0 REV__sp|P16761|PP85_HCMVAPhosphoprotein85OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL25PE=3SV=1 REV__sp|P16761|PP85_HCMVAPhosphoprotein85OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL25PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7789306640625 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 21.86 1 20.475 19.975 20.975 -1.3847 0 0 0 0.19674 1 3457 3457 0.12781 0.084027 1 + 4866 24697 2952 2955 5162 5162 0.0013803672338781325 AYDLIGDLY 9 Unmodified _AYDLIGDLY_ 0 0 0 ENST00000581549.1_1_17:70599848-70614472:-|nuORF ENST00000581549.1_1_17:70599848-70614472:-|nuORF ENST00000581549.1_1_17:70599848-70614472:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2732543945312 2 521.758215 1041.50188 0.1946 0.00010153 0.23586 0.00012306 0.43046 0.0002246 522.2599860201552 116.45 0.83509 116.45 115.91 116.74 0 33 23 2 0 0 0 0.65439 1 22820 22820 9.3474 0 1 1555400 4867 11504 2953 2956 5163 5163 -0.01721358404847706 AYDQKEKWH 9 Unmodified _AYDQKEKWH_ 0 0 0 REV__nc|ENSG00000167615|Q96PV6-1|LENG8 REV__nc|ENSG00000167615|Q96PV6-1|LENG8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2787475585938 2 602.790912 1203.56727 0.83939 0.00050598 -2.8203 -0.0017 -1.9809 -0.001194 602.7894309286424 79.395 0.55045 79.395 79.031 79.582 0 19 15 2 0 0 0 0.8319 1 15397 15397 7.9102 3.1541 1 1442100 + 4868 17945 2954 2957 5164 5164 -0.026369441591668874 AYDSDPEYS 9 Unmodified _AYDSDPEYS_ 0 0 0 ENST00000603831.5_1_1:48764387-48865024:-|nuORF;nc|ENSG00000132122|Q9NWH7-2|SPATA6;ENSG00000132122|ENST00000371847|SPATA6 ENST00000603831.5_1_1:48764387-48865024:-|nuORF ENST00000603831.5_1_1:48764387-48865024:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.698486328125 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 138.76 1 133.91 133.41 134.41 -4.8492 0 0 0 0.20155 1 26746 26746 23.148 6.2061 1 4869 3706 2955 2958 5165 5165 -0.13324292957599937 AYDSNGFDYK 10 Unmodified _AYDSNGFDYK_ 0 0 0 tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1 tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1 tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2508544921875 2 590.251286 1178.48802 NaN NaN NaN NaN NaN NaN NaN 72.588 1 69.277 68.777 69.777 -3.3107 0 0 0 0.22588 1 14146 14146 10.824 1.4408 1 4870 26016 2956 2959 5166 5166 -0.0940863590394656 AYFEISAK 8 Unmodified _AYFEISAK_ 0 0 0 ENSG00000108551|ENST00000225688|RASD1 ENSG00000108551|ENST00000225688|RASD1 ENSG00000108551|ENST00000225688|RASD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.432 1 74.432 73.932 74.932 0 0 0 0 0.2386 1 14451 14451 0.12286 0 1 4871 2481 2957 2960 5167 5167 0.003546936318684857 AYFEISAK 8 Unmodified _AYFEISAK_ 0 0 0 ENSG00000108551|ENST00000225688|RASD1 ENSG00000108551|ENST00000225688|RASD1 ENSG00000108551|ENST00000225688|RASD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.414 1 75.414 74.914 75.914 0 0 0 0 0.21486 1 14646 14646 1.6526 0 1 4872 2481 2957 2960 5168 5168 0.003546936318684857 AYFEISAK 8 Unmodified _AYFEISAK_ 0 0 0 ENSG00000108551|ENST00000225688|RASD1 ENSG00000108551|ENST00000225688|RASD1 ENSG00000108551|ENST00000225688|RASD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.23046875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 76.351 1 72.718 72.218 73.218 -3.6337 0 0 0 0.21486 1 14535 14535 3.5965 0 1 4873 2481 2957 2960 5169 5169 0.003546936318684857 AYGAIAVTY 9 Unmodified _AYGAIAVTY_ 0 0 0 REV__ENSG00000125730|ENST00000245907|C3 REV__ENSG00000125730|ENST00000245907|C3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 61.972 1 61.972 61.472 62.472 0 0 0 0 0.23508 1 11890 11890 2.9952 1.151 1 + 4874 15825 2958 2961 5170 5170 0.00354693631857117 AYGAIAVTY 9 Unmodified _AYGAIAVTY_ 0 0 0 REV__ENSG00000125730|ENST00000245907|C3 REV__ENSG00000125730|ENST00000245907|C3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 87.052 1 83.325 82.825 83.825 -3.727 0 0 0 0.19665 1 17019 17019 0.12781 0.054551 1 + 4875 15825 2958 2961 5171 5171 0.00354693631857117 AYGAIAVTY 9 Unmodified _AYGAIAVTY_ 0 0 0 REV__ENSG00000125730|ENST00000245907|C3 REV__ENSG00000125730|ENST00000245907|C3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 94.753 1 90.562 90.062 91.062 -4.1911 0 0 0 0.1964 1 18083 18083 0.073264 0 1 + 4876 15825 2958 2961 5172 5172 0.00354693631857117 AYGAIAVTY 9 Unmodified _AYGAIAVTY_ 0 0 0 REV__ENSG00000125730|ENST00000245907|C3 REV__ENSG00000125730|ENST00000245907|C3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 95.717 1 91.526 91.026 92.026 -4.1911 0 0 0 0.1964 1 18271 18271 0.12781 0.063827 1 + 4877 15825 2958 2961 5173 5173 0.00354693631857117 AYGAIAVTY 9 Unmodified _AYGAIAVTY_ 0 0 0 REV__ENSG00000125730|ENST00000245907|C3 REV__ENSG00000125730|ENST00000245907|C3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.17022705078125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 96.327 1 92.093 91.593 92.593 -4.2348 0 0 0 0.23508 1 18391 18391 2.9952 1.151 1 + 4878 15825 2958 2961 5174 5174 0.00354693631857117 AYGAIAVTY 9 Unmodified _AYGAIAVTY_ 0 0 0 REV__ENSG00000125730|ENST00000245907|C3 REV__ENSG00000125730|ENST00000245907|C3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 86.805 1 83.076 82.576 83.576 -3.7289 0 0 0 0.23508 1 16603 16603 2.9952 1.151 1 + 4879 15825 2958 2961 5175 5175 0.00354693631857117 AYGAKHKG 8 Unmodified _AYGAKHKG_ 0 0 0 REV__ENST00000356080.8_1_10:111767990-111860405:+|nuORF REV__ENST00000356080.8_1_10:111767990-111860405:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 416.2568664550781 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 120.82 1 116.35 115.85 116.85 -4.467 0 0 0 0.21486 1 23264 23264 2.8892 0 1 + 4880 20806 2959 2962 5176 5176 0.01788379757340408 AYGLFLRTG 9 Unmodified _AYGLFLRTG_ 0 0 0 REV__INSRR|p.L920Cfs*37|2|0.34|ENSG00000027644|chr1:156844261-156844261|C/-|frameshift_variant REV__INSRR|p.L920Cfs*37|2|0.34|ENSG00000027644|chr1:156844261-156844261|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 333.20599365234375 3 333.187032 996.539266 NaN NaN NaN NaN NaN NaN NaN 113.27 1 109 108.5 109.5 -4.2725 0 0 0 0.23508 1 21813 21813 2.4985 0 1 + 4881 23664 2960 2963 5177 5177 0.04085777651425815 AYHDGACC 8 Unmodified _AYHDGACC_ 0 0 0 ENST00000533440.1_1_11:62562405-62563999:-|nuORF;NXF1|p.S494Cfs*29|1|0.38|ENSG00000162231|chr11:62795923-62795924|AG/-|frameshift_variant;ENSG00000162231|ENST00000294172|NXF1 ENST00000533440.1_1_11:62562405-62563999:-|nuORF ENST00000533440.1_1_11:62562405-62563999:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4854125976562 1 839.281085 838.273808 0.62272 0.00052264 -3.3836 -0.0028398 -2.7609 -0.0023172 839.2785506266706 167.97 0.55127 163.18 163.11 163.66 -4.7898 16 15 2 0 0 0 0.88047 1 34023 34023 0.79363 0 1 113810000 4882 5317 2961 2964 5178 5178 -0.15179757805196914 AYILLKPVK 9 Unmodified _AYILLKPVK_ 0 0 0 REV__ENST00000453184.2_1_2:90007722-90008108:+|nuORF REV__ENST00000453184.2_1_2:90007722-90008108:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2742309570312 2 522.844428 1043.6743 -0.14476 -7.5685E-05 3.2475 0.0016979 3.1027 0.0016222 522.8473208114355 142.28 0.17245 137.62 137.51 137.68 -4.656 8 4 3 0 0 0 0.86532 1 28134 28134 2.0598 0.21551 1 1510900 + 4883 21826 2962 2965 5179 5179 0.15421257793173027 AYINANYVD 9 Unmodified _AYINANYVD_ 0 0 0 PTPRZ1|p.D1781A|1|0.19|ENSG00000106278|chr7:122036657-122036657|A/C|missense_variant PTPRZ1|p.D1781A|1|0.19|ENSG00000106278|chr7:122036657-122036657|A/C|missense_variant PTPRZ1|p.D1781A|1|0.19|ENSG00000106278|chr7:122036657-122036657|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279296875 2 521.745639 1041.47673 0.20733 0.00010818 0.27215 0.00014199 0.47948 0.00025017 521.7458095617435 135.56 0.69247 135.56 135.29 135.99 0 30 19 2 0 0 0 0.65155 1 26840 26840 15.847 0 1 4772500 4884 12849 2963 2966 5180 5180 -0.04235413207447891 AYLVYKRWKLK 11 Unmodified _AYLVYKRWKLK_ 0 0 0 ENST00000549913.6_1_12:113306162-113306792:+|nuORF ENST00000549913.6_1_12:113306162-113306792:+|nuORF ENST00000549913.6_1_12:113306162-113306792:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26763916015625 3 489.966007 1466.87619 NaN NaN NaN NaN NaN NaN NaN 154.74 1 154.74 154.24 155.24 0 0 0 0 0.23698 1 31015 31015 0.50596 0 1 4885 11170 2964 2967 5181 5181 0.16142741478711287 AYNGPVPGYQ 10 Unmodified _AYNGPVPGYQ_ 0 0 0 SEC24C|p.P216Qfs*11|1|0.45|ENSG00000176986|chr10:73760179-73760179|C/-|frameshift_variant;ENSG00000176986|ENST00000345254|SEC24C SEC24C|p.P216Qfs*11|1|0.45|ENSG00000176986|chr10:73760179-73760179|C/-|frameshift_variant SEC24C|p.P216Qfs*11|1|0.45|ENSG00000176986|chr10:73760179-73760179|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2753295898438 2 533.253631 1064.49271 NaN NaN NaN NaN NaN NaN NaN 32.201 1 32.201 31.701 32.701 0 0 0 0 0.22576 1 5841 5841 14.838 1.7958 1 4886 6492 2965 2968 5182 5182 -0.036957069705295 AYNKLRLSIT 10 Unmodified _AYNKLRLSIT_ 0 0 0 REV__RMDN2|p.F331Efs*33|1|0.12|ENSG00000115841|chr2:37997459-37997462|TGTT/-|frameshift_variant REV__RMDN2|p.F331Efs*33|1|0.12|ENSG00000115841|chr2:37997459-37997462|TGTT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.24951171875 2 589.84823 1177.68191 NaN NaN NaN NaN NaN NaN NaN 67.121 1 64.013 63.513 64.513 -3.1086 0 0 0 0.22588 1 13016 13016 6.7232 2.7788 1 + 4887 24567 2966 2969 5183 5183 0.10017365322801197 AYPSIPSPP 9 Unmodified _AYPSIPSPP_ 0 0 0 REV__ENSG00000143476|ENST00000366991|DTL REV__ENSG00000143476|ENST00000366991|DTL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 64.694 1 61.236 60.736 61.736 -3.4581 0 0 0 0.23508 1 12095 12095 1.1933 0 1 + 4888 16732 2967 2970 5184 5184 0.003546936318684857 AYPVWPYAQ 9 Unmodified _AYPVWPYAQ_ 0 0 0 ENST00000560542.1_1_14:24633743-24634393:+|nuORF ENST00000560542.1_1_14:24633743-24634393:+|nuORF ENST00000560542.1_1_14:24633743-24634393:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7673950195312 2 547.768917 1093.52328 0.20103 0.00011012 1.0248 0.00056137 1.2259 0.00067149 548.2687976252678 136.29 0.21043 131.65 131.53 131.74 -4.6399 6 5 2 0 0 0 0.59384 1 26881 26881 13.508 1.2672 1 599720 4889 11289 2968 2971 5185 5185 -0.019739285854939226 AYPVWPYAQ 9 Unmodified _AYPVWPYAQ_ 0 0 0 ENST00000560542.1_1_14:24633743-24634393:+|nuORF ENST00000560542.1_1_14:24633743-24634393:+|nuORF ENST00000560542.1_1_14:24633743-24634393:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7711181640625 2 547.768917 1093.52328 0.085309 4.673E-05 3.6966 0.0020249 3.7819 0.0020716 547.7717127798948 136.32 0.2081 131.43 131.34 131.55 -4.8951 9 5 2 0 0 0 0.50294 1 26200 26200 19.439 5.5329 1 1995600 4890 11289 2968 2971 5186 5186 -0.019739285854939226 AYRNNEWYHHW 11 Unmodified _AYRNNEWYHHW_ 0 0 0 REV__ENSG00000157350|ENST00000342907|ST3GAL2 REV__ENSG00000157350|ENST00000342907|ST3GAL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 788.3472290039062 2 788.347449 1574.68034 NaN NaN NaN NaN NaN NaN NaN 167.98 1 163.19 162.69 163.69 -4.7898 0 0 0 0.22632 1 33928 33928 0.026206 0.018923 1 + 4891 17293 2969 2972 5187 5187 -0.08400875713232381 AYSRRWHFYRR 11 Unmodified _AYSRRWHFYRR_ 0 0 0 REV__nc|ENSG00000196371|P22083-2|FUT4 REV__nc|ENSG00000196371|P22083-2|FUT4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2764282226562 3 533.279759 1596.81745 NaN NaN NaN NaN NaN NaN NaN 154.4 1 149.11 148.61 149.61 -5.2854 0 0 0 0.22632 1 29937 29937 0.50596 0.50539 1 + 4892 19241 2970 2973 5188 5188 0.04291077956963818 AYWGILFWVYK 11 Unmodified _AYWGILFWVYK_ 0 0 0 REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1;REV__GABBR1|p.A575Sfs*2|3|0.31|ENSG00000204681|chr6:29609366-29609367|-/G|frameshift_variant REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 723.37548828125 2 723.384448 1444.75434 NaN NaN NaN NaN NaN NaN NaN 169.86 1 164.99 164.49 165.49 -4.873 0 0 0 0.22632 1 33580 33580 0.58532 0 1 + 4893 19561;23557 2971 2974 5189 5189 0.0497569939634559 CACCCCRA 8 Unmodified _CACCCCRA_ 0 0 0 REV__nc|nan|Q9H972-2|C14orf93 REV__nc|nan|Q9H972-2|C14orf93 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 831.7430419921875 1 832.239102 831.231826 0.35474 0.00029523 1.1071 0.00092136 1.4618 0.0012166 832.2410325574202 8.0293 0.73805 8.0293 7.5134 8.2515 0 29 20 2 0 0 0 0.9003 1 766 766 0 0 1 426140 + 4894 14740 2972 2975 5190 5190 -0.19054096081242733 CACCCCRA 8 Unmodified _CACCCCRA_ 0 0 0 REV__nc|nan|Q9H972-2|C14orf93 REV__nc|nan|Q9H972-2|C14orf93 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 832.747314453125 1 832.239102 831.231826 0.35468 0.00029518 1.2019 0.0010002 1.5565 0.0012954 832.2409784281372 8.6159 0.77899 8.6159 8.1851 8.9641 0 31 21 2 0 0 0 0.9003 1 896 896 0 0 1 280100 + 4895 14740 2972 2975 5191 5191 -0.19054096081242733 CACCCCRA 8 Unmodified _CACCCCRA_ 0 0 0 REV__nc|nan|Q9H972-2|C14orf93 REV__nc|nan|Q9H972-2|C14orf93 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 833.2447509765625 1 832.239102 831.231826 -0.24652 -0.00020516 1.6661 0.0013866 1.4195 0.0011814 832.2415194728952 5.2665 2.3857 4.6402 3.8346 6.2202 -0.62626 94 66 2 0 0 0 0.89856 2 363 363;529 0 0 1 320510 + 4896 14740 2972 2975 5192;5193 5192 -0.19054096081242733 CACCCCRA 8 Unmodified _CACCCCRA_ 0 0 0 REV__nc|nan|Q9H972-2|C14orf93 REV__nc|nan|Q9H972-2|C14orf93 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 833.7123413085938 1 832.239102 831.231826 -0.24649 -0.00020513 0.95012 0.00079073 0.70364 0.00058559 832.2410146997113 7.2862 1.0604 6.607 6.0237 7.0841 -0.67913 51 29 2 0 0 0 8448 2 629 629;718 0 0 1 345120 + 4897 14740 2972 2975 5194;5195 5194 -0.19054096081242733 CACCCCRA 8 Unmodified _CACCCCRA_ 0 0 0 REV__nc|nan|Q9H972-2|C14orf93 REV__nc|nan|Q9H972-2|C14orf93 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 831.74755859375 1 832.239102 831.231826 -0.24652 -0.00020516 1.6661 0.0013866 1.4195 0.0011814 832.2415194728952 5.2665 2.3857 4.6402 3.8346 6.2202 -0.62626 94 66 2 0 0 0 0.9003 1 419 419 0 0 1 320510 + 4898 14740 2972 2975 5196 5196 -0.19054096081242733 CACCCCRA 8 Unmodified _CACCCCRA_ 0 0 0 REV__nc|nan|Q9H972-2|C14orf93 REV__nc|nan|Q9H972-2|C14orf93 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 831.7327880859375 1 832.239102 831.231826 -0.24641 -0.00020507 1.5783 0.0013135 1.3319 0.0011085 832.2414033779329 7.8878 0.32257 7.2087 7.0127 7.3353 -0.67913 12 8 2 0 0 0 0.9003 1 767 767 0 0 1 492030 + 4899 14740 2972 2975 5197 5197 -0.19054096081242733 CACCCCRA 8 Unmodified _CACCCCRA_ 0 0 0 REV__nc|nan|Q9H972-2|C14orf93 REV__nc|nan|Q9H972-2|C14orf93 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 831.7359008789062 1 832.239102 831.231826 -0.24649 -0.00020513 0.95012 0.00079073 0.70364 0.00058559 832.2410146997113 7.2862 1.0604 6.607 6.0237 7.0841 -0.67913 51 29 2 0 0 0 0.9003 1 688 688 0 0 1 345120 + 4900 14740 2972 2975 5198 5198 -0.19054096081242733 CACCCCRA 8 Unmodified _CACCCCRA_ 0 0 0 REV__nc|nan|Q9H972-2|C14orf93 REV__nc|nan|Q9H972-2|C14orf93 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 832.239102 831.231826 -0.24644 -0.0002051 1.7654 0.0014692 1.519 0.0012641 832.2415353801559 8.364 0.61938 7.6849 7.3353 7.9547 -0.67913 -0.17219 0.00030757 NaN 0 32 17 2 NaN NaN NaN NaN 0 NaN NaN 0 342200 + 4901 14740 2972 2975 -0.19054096081242733 CACCCCRA 8 Unmodified _CACCCCRA_ 0 0 0 REV__nc|nan|Q9H972-2|C14orf93 REV__nc|nan|Q9H972-2|C14orf93 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 832.239102 831.231826 -0.43883 -0.00036521 1.9287 0.0016051 1.4899 0.0012399 832.2415558193129 5.6944 1.7625 4.6545 3.4759 5.2384 -1.04 0.0071054 0.00010177 NaN 0 73 49 2 NaN NaN NaN NaN 0 NaN NaN 0 241280 + 4902 14740 2972 2975 -0.19054096081242733 CACCCCRA 8 Unmodified _CACCCCRA_ 0 0 0 REV__nc|nan|Q9H972-2|C14orf93 REV__nc|nan|Q9H972-2|C14orf93 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 832.239102 831.231826 -1.4381 -0.0011969 0.14151 0.00011777 -1.2966 -0.0010791 832.2423284516967 7.6671 2.4196 6.6523 5.6236 8.0432 -1.0148 0.022639 -0.00032113 NaN 0 220 68 4 NaN NaN NaN NaN 0 NaN NaN 0 1654600 + 4903 14740 2972 2975 -0.19054096081242733 CACHSQDAGP 10 Unmodified _CACHSQDAGP_ 0 0 0 REV__CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant REV__CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 495.185302734375 2 494.684201 987.35385 0.062541 3.0938E-05 -0.6145 -0.00030398 -0.55196 -0.00027304 494.68384114237983 105.61 0.84854 101.23 100.8 101.65 -4.3764 41 23 2 0 0 0 0.52619 1 20227 20227 0.043787 0 1 1481900 + 4904 13242 2973 2976 5199 5199 -0.14033316202005608 CAEAGSPD 8 Unmodified _CAEAGSPD_ 0 0 0 ENSG00000174788|ENST00000311069|PCP2 ENSG00000174788|ENST00000311069|PCP2 ENSG00000174788|ENST00000311069|PCP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.1410827636719 2 375.142161 748.269769 NaN NaN NaN NaN NaN NaN NaN 89.279 1 89.279 88.779 89.779 0 0 0 0 0.21486 1 17434 17434 2.5775 0 1 4905 6370 2974 2977 5200 5200 -0.11443524027265539 CAGKPPRPPR 10 Unmodified _CAGKPPRPPR_ 0 0 0 REV__CDKN1B|p.E126Gfs*10|1|0.67|ENSG00000111276|chr12:12718214-12718215|TG/-|frameshift_variant REV__CDKN1B|p.E126Gfs*10|1|0.67|ENSG00000111276|chr12:12718214-12718215|TG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012939453125 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 135.92 1 131.03 130.53 131.53 -4.8951 0 0 0 0.22588 1 26117 26117 1.7423 0.67081 1 + 4906 13358 2975 2978 5201 5201 0.05087733650748305 CARELWGRTRM 11 Unmodified _CARELWGRTRM_ 0 0 0 ENST00000588918.5_1_19:3544485-3544704:-|nuORF ENST00000588918.5_1_19:3544485-3544704:-|nuORF ENST00000588918.5_1_19:3544485-3544704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2323303222656 3 460.232541 1377.67579 NaN NaN NaN NaN NaN NaN NaN 81.011 1 81.011 80.511 81.511 0 0 0 0 0.22632 1 15774 15774 1.4074 0 1 4907 11578 2976 2979 5202 5202 0.0020620054795017495 CARELWGRTRM 11 Unmodified _CARELWGRTRM_ 0 0 0 ENST00000588918.5_1_19:3544485-3544704:-|nuORF ENST00000588918.5_1_19:3544485-3544704:-|nuORF ENST00000588918.5_1_19:3544485-3544704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2314147949219 3 460.232541 1377.67579 NaN NaN NaN NaN NaN NaN NaN 84.704 1 80.795 80.295 81.295 -3.9093 0 0 0 0.22632 1 16103 16103 0.172 0.12821 1 4908 11578 2976 2979 5203 5203 0.0020620054795017495 CARPSSVVP 9 Unmodified _CARPSSVVP_ 0 0 0 REV__ENST00000398073.6_1_12:58216199-58216532:-|nuORF REV__ENST00000398073.6_1_12:58216199-58216532:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2396545410156 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 112.78 1 112.78 112.28 113.28 0 0 0 0 0.12288 1 22180 22180 34.102 1.9855 1 + 4909 21319 2977 2980 5204 5204 0.003732718485366604 CCCCCCFVV 9 Unmodified _CCCCCCFVV_ 0 0 0 REV__ENST00000318348.8_1_12:110289098-110289272:-|nuORF REV__ENST00000318348.8_1_12:110289098-110289272:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 328.19683837890625 3 328.097581 981.270913 NaN NaN NaN NaN NaN NaN NaN 45.423 1 45.423 44.923 45.923 0 0 0 0 0.19622 1 8539 8539 0.96228 0.96228 1 + 4910 20535 2978 2981 5205 5205 -0.22047131841873124 CCCCCCSH 8 Unmodified _CCCCCCSH_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.085205078125 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 25.529 1 25.529 25.029 26.029 0 0 0 0 0.21486 1 4434 4434 0 0 1 4911 9982 2979 2982 5206 5206 -0.2790602160397384 CCCCCCSH 8 Unmodified _CCCCCCSH_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.0575866699219 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 135.65 1 135.65 135.15 136.15 0 0 0 0 0.21486 1 26872 26872 0 0 1 4912 9982 2979 2982 5207 5207 -0.2790602160397384 CCCCCCSH 8 Unmodified _CCCCCCSH_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.06805419921875 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 135.79 1 135.79 135.29 136.29 0 0 0 0 0.21486 1 26900 26900 0 0 1 4913 9982 2979 2982 5208 5208 -0.2790602160397384 CCCCCCSH 8 Unmodified _CCCCCCSH_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.12744140625 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 143.31 1 143.31 142.81 143.81 0 0 0 0 0.21486 1 28593 28593 0 0 1 4914 9982 2979 2982 5209 5209 -0.2790602160397384 CCCCCCSH 8 Unmodified _CCCCCCSH_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.0933532714844 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 32.174 1 29.944 29.444 30.444 -2.2305 0 0 0 0.21486 1 5857 5857 0 0 1 4915 9982 2979 2982 5210 5210 -0.2790602160397384 CCCCCCSH 8 Unmodified _CCCCCCSH_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.068115234375 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 143.44 1 138.79 138.29 139.29 -4.656 0 0 0 0.21486 1 28371 28371 0 0 1 4916 9982 2979 2982 5211 5211 -0.2790602160397384 CCCCCCSH 8 Unmodified _CCCCCCSH_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.0945129394531 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 155.01 1 150.23 149.73 150.73 -4.7791 0 0 0 0.21486 1 30817 30817 0 0 1 4917 9982 2979 2982 5212 5212 -0.2790602160397384 CCCCCCSH 8 Unmodified _CCCCCCSH_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.09307861328125 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 31.728 1 29.702 29.202 30.202 -2.0264 0 0 0 0.21486 1 5485 5485 0 0 1 4918 9982 2979 2982 5213 5213 -0.2790602160397384 CCCCCCSH 8 Unmodified _CCCCCCSH_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.0674743652344 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 144.35 1 139.28 138.78 139.78 -5.0671 0 0 0 0.21486 1 27847 27847 0 0 1 4919 9982 2979 2982 5214 5214 -0.2790602160397384 CCCCCCSH 8 Unmodified _CCCCCCSH_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.0857849121094 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 162.66 1 157.51 157.01 158.01 -5.1438 0 0 0 0.21486 1 31613 31613 0 0 1 4920 9982 2979 2982 5215 5215 -0.2790602160397384 CCCCCEECGG 10 Unmodified _CCCCCEECGG_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.1044921875 2 505.104169 1008.19379 NaN NaN NaN NaN NaN NaN NaN 43.87 1 41.08 40.58 41.58 -2.79 0 0 0 0.22588 1 8230 8230 0 0 1 4921 6036 2980 2983 5216 5216 -0.30998394848859334 CCCCCEECGG 10 Unmodified _CCCCCEECGG_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.0819091796875 2 505.104169 1008.19379 NaN NaN NaN NaN NaN NaN NaN 130.21 1 125.58 125.08 126.08 -4.6359 0 0 0 0.22588 1 25663 25663 0 0 1 4922 6036 2980 2983 5217 5217 -0.30998394848859334 CCCCCEECGG 10 Unmodified _CCCCCEECGG_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.0880432128906 2 505.104169 1008.19379 NaN NaN NaN NaN NaN NaN NaN 161.74 1 156.95 156.45 157.45 -4.7898 0 0 0 0.22588 1 32169 32169 0 0 1 4923 6036 2980 2983 5218 5218 -0.30998394848859334 CCCCCEECGG 10 Unmodified _CCCCCEECGG_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 505.13677978515625 2 505.104169 1008.19379 NaN NaN NaN NaN NaN NaN NaN 65.39 1 61.932 61.432 62.432 -3.4581 0 0 0 0.22588 1 12233 12233 0 0 1 4924 6036 2980 2983 5219 5219 -0.30998394848859334 CCCCCEECGG 10 Unmodified _CCCCCEECGG_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 505.04705810546875 2 505.104169 1008.19379 NaN NaN NaN NaN NaN NaN NaN 142.75 1 137.85 137.35 138.35 -4.8982 0 0 0 0.22588 1 27546 27546 0 0 1 4925 6036 2980 2983 5220 5220 -0.30998394848859334 CCCCCGGELF 10 Unmodified _CCCCCGGELF_ 0 0 0 REV__MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant REV__MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 519.2818603515625 2 519.154519 1036.29449 NaN NaN NaN NaN NaN NaN NaN 143.97 1 143.97 143.47 144.47 0 0 0 0 2.8426 1 28750 28750 0.26539 0.19213 1 + 4926 23865 2981 2984 5221 5221 -0.22220994803706162 CCCCCLCCDSA 11 Unmodified _CCCCCLCCDSA_ 0 0 0 REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10 REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.0941162109375 3 376.092278 1125.25501 NaN NaN NaN NaN NaN NaN NaN 176.15 1 171.28 170.78 171.78 -4.8739 0 0 0 0.23698 1 35036 35036 0 0 1 + 4927 16472 2982 2985 5222 5222 -0.30261206141085495 CCCCCSDS 8 Unmodified _CCCCCSDS_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF;ENST00000308086.2_1_12:72057128-72057308:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 412.1971435546875 2 412.08102 822.147487 NaN NaN NaN NaN NaN NaN NaN 114.82 1 114.82 114.32 115.32 0 0 0 0 0.2396 1 22592 22592 0 0 1 4928 10970 2983 2986 5223 5223 -0.27070091688642606 CCCCCSDSSC 10 Unmodified _CCCCCSDSSC_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 507.1029968261719 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 4.5696 1 4.5696 4.0696 5.0696 0 0 0 0 0.22588 1 112 112 0 0 1 4929 10970 2984 2987 5224 5224 -0.3169069871148622 CCCCCSDSSC 10 Unmodified _CCCCCSDSSC_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 507.1006164550781 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 179.48 1 179.48 178.98 179.98 0 0 0 0 0.22588 1 37181 37181 0 0 1 4930 10970 2984 2987 5225 5225 -0.3169069871148622 CCCCCSDSSC 10 Unmodified _CCCCCSDSSC_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.102294921875 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 4.492 1 3.8657 3.3657 4.3657 -0.62626 0 0 0 0.22588 1 96 96 0 0 1 4931 10970 2984 2987 5226 5226 -0.3169069871148622 CCCCCSDSSC 10 Unmodified _CCCCCSDSSC_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.10009765625 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 6.1603 1 5.5341 5.0341 6.0341 -0.62626 0 0 0 0.22588 1 425 425 0 0 1 4932 10970 2984 2987 5227 5227 -0.3169069871148622 CCCCCSDSSC 10 Unmodified _CCCCCSDSSC_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.1023254394531 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 6.4111 1 5.7849 5.2849 6.2849 -0.62626 0 0 0 0.22588 1 474 474 0 0 1 4933 10970 2984 2987 5228 5228 -0.3169069871148622 CCCCCSDSSC 10 Unmodified _CCCCCSDSSC_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 507.10089111328125 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 6.9671 1 5.9225 5.4225 6.4225 -1.0446 0 0 0 0.22588 1 554 554 0 0 1 4934 10970 2984 2987 5229 5229 -0.3169069871148622 CCCCCSDSSC 10 Unmodified _CCCCCSDSSC_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 507.101318359375 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 8.4881 1 7.4236 6.9236 7.9236 -1.0645 0 0 0 0.22588 1 836 836 0 0 1 4935 10970 2984 2987 5230 5230 -0.3169069871148622 CCCCCSDSSC 10 Unmodified _CCCCCSDSSC_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 507.1019287109375 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 11.198 1 10.105 9.6046 10.605 -1.0936 0 0 0 0.22588 1 1316 1316 0 0 1 4936 10970 2984 2987 5231 5231 -0.3169069871148622 CCCCCSDSSC 10 Unmodified _CCCCCSDSSC_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 507.10125732421875 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 11.53 1 10.401 9.9007 10.901 -1.1293 0 0 0 0.22588 1 1370 1370 0 0 1 4937 10970 2984 2987 5232 5232 -0.3169069871148622 CCCCCSDSSC 10 Unmodified _CCCCCSDSSC_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 507.1006164550781 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 5.24 1 4.2311 3.7311 4.7311 -1.0089 0 0 0 0.22588 1 210 210 0 0 1 4938 10970 2984 2987 5233 5233 -0.3169069871148622 CCCCCSDSSC 10 Unmodified _CCCCCSDSSC_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 507.10125732421875 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 7.5195 1 6.5046 6.0046 7.0046 -1.0148 0 0 0 0.22588 1 616 616 0 0 1 4939 10970 2984 2987 5234 5234 -0.3169069871148622 CCCCNCCCGH 10 Unmodified _CCCCNCCCGH_ 0 0 0 ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 350.0732116699219 3 350.073329 1047.19816 NaN NaN NaN NaN NaN NaN NaN 32.662 1 30.515 30.015 31.015 -2.1468 0 0 0 0.22588 1 5673 5673 0.15932 0.15932 1 4940 4709 2985 2988 5235 5235 -0.323552089069608 CCCCSSQPP 9 Unmodified _CCCCSSQPP_ 0 0 0 ENSG00000180758|ENST00000377411|GPR157 ENSG00000180758|ENST00000377411|GPR157 ENSG00000180758|ENST00000377411|GPR157 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.1438293457031 2 464.145009 926.275465 NaN NaN NaN NaN NaN NaN NaN 54.422 1 51.284 50.784 51.784 -3.1377 0 0 0 0.23508 1 10071 10071 1.8442 1.0506 1 4941 6692 2986 2989 5236 5236 -0.1906220810310515 CCCCYCCFQG 10 Unmodified _CCCCYCCFQG_ 0 0 0 ENST00000220931.10_1_8:102803112-102803181:-|nuORF ENST00000220931.10_1_8:102803112-102803181:-|nuORF ENST00000220931.10_1_8:102803112-102803181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 566.6547241210938 2 566.646004 1131.27746 NaN NaN NaN NaN NaN NaN NaN 172.47 1 167.57 167.07 168.07 -4.8977 0 0 0 2.8426 1 34207 34207 0.13989 0.13989 1 4942 8132 2987 2990 5237 5237 -0.2829323868115807 CCCDPDCS 8 Unmodified _CCCDPDCS_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000464809.5_1_12:111052207-111065748:+|nuORF;ENST00000478122.6_1_12:111052207-111066834:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 423.10040283203125 2 423.100267 844.185981 NaN NaN NaN NaN NaN NaN NaN 4.7626 1 4.7626 4.2626 5.2626 0 0 0 0 0.21486 1 150 150 0 0 1 4943 7616 2988 2991 5238 5238 -0.24234462782476385 CCCGGDGGA 9 Unmodified _CCCGGDGGA_ 0 0 0 ENST00000431489.5_1_2:62932928-62934072:+|nuORF ENST00000431489.5_1_2:62932928-62934072:+|nuORF ENST00000431489.5_1_2:62932928-62934072:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3867797851562 1 742.195306 741.18803 0.33884 0.00025149 -1.7029 -0.0012639 -1.3641 -0.0010124 742.1963114984741 105.37 0.31814 101 100.73 101.05 -4.3764 13 8 2 0 0 0 0.88433 1 20195 20195 0 0 1 3106700 4944 9785 2989 2992 5239 5239 -0.1929166598234815 CCCGGLAA 8 Unmodified _CCCGGLAA_ 0 0 0 REV__sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 REV__sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 349.07379150390625 2 349.126945 696.239337 NaN NaN NaN NaN NaN NaN NaN 131.11 1 126.47 125.97 126.97 -4.6359 0 0 0 0.21486 1 25838 25838 0.79363 0 1 + 4945 24700 2990 2993 5240 5240 -0.12093297217666077 CCCGHCRPE 9 Unmodified _CCCGHCRPE_ 0 0 0 ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 504.29742431640625 2 504.16935 1006.32415 0.2295 0.00011571 -0.13139 -6.6244E-05 0.09811 4.9464E-05 504.1708077091241 122.6 0.82274 117.87 117.47 118.29 -4.731 72 23 4 0 0 0 0.6215 1 23612 23612 0.12781 0 1 5241000 4946 4709 2991 2994 5241 5241 -0.17876294743348353 CCCHAPCCPC 10 Unmodified _CCCHAPCCPC_ 0 0 0 REV__nc|ENSG00000145103|Q86SU0-3|ILDR1 REV__nc|ENSG00000145103|Q86SU0-3|ILDR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.095458984375 3 347.096351 1038.26722 NaN NaN NaN NaN NaN NaN NaN 5.7493 1 5.123 4.623 5.623 -0.62626 0 0 0 0.22588 1 343 343 0.15932 0.15932 1 + 4947 16821 2992 2995 5242 5242 -0.2503780161573559 CCCHAPCCPC 10 Unmodified _CCCHAPCCPC_ 0 0 0 REV__nc|ENSG00000145103|Q86SU0-3|ILDR1 REV__nc|ENSG00000145103|Q86SU0-3|ILDR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 347.2944030761719 3 347.096351 1038.26722 NaN NaN NaN NaN NaN NaN NaN 8.5244 1 7.4898 6.9898 7.9898 -1.0347 0 0 0 0.22588 1 804 804 0.15932 0.15932 1 + 4948 16821 2992 2995 5243 5243 -0.2503780161573559 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.1343994140625 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 16.716 1 16.716 16.216 17.216 0 0 0 0 0.21486 1 2610 2610 0 0 1 4949 7618 2993 2996 5244 5244 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.1051330566406 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 21.646 1 21.646 21.146 22.146 0 0 0 0 0.21486 1 3629 3629 0 0 1 4950 7618 2993 2996 5245 5245 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.113525390625 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 32.156 1 32.156 31.656 32.656 0 0 0 0 0.21486 1 5832 5832 0 0 1 4951 7618 2993 2996 5246 5246 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.15631103515625 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 33.023 1 33.023 32.523 33.523 0 0 0 0 0.21486 1 6017 6017 0 0 1 4952 7618 2993 2996 5247 5247 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.3438720703125 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 37.641 1 37.641 37.141 38.141 0 0 0 0 0.21486 1 6963 6963 0 0 1 4953 7618 2993 2996 5248 5248 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.35333251953125 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 40.394 1 40.394 39.894 40.894 0 0 0 0 0.21486 1 7515 7515 0 0 1 4954 7618 2993 2996 5249 5249 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.1138610839844 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 40.612 1 40.612 40.112 41.112 0 0 0 0 0.21486 1 7556 7556 0.69038 0.69038 1 4955 7618 2993 2996 5250 5250 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.11346435546875 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 177.37 1 177.37 176.87 177.87 0 0 0 0 0.21486 1 36742 36742 0 0 1 4956 7618 2993 2996 5251 5251 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.12188720703125 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 26.374 1 24.592 24.092 25.092 -1.7821 0 0 0 0.21486 1 4653 4653 0 0 1 4957 7618 2993 2996 5252 5252 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.1145935058594 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 27.453 1 25.671 25.171 26.171 -1.7821 0 0 0 0.21486 1 4879 4879 0 0 1 4958 7618 2993 2996 5253 5253 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.1138916015625 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 44.479 1 41.689 41.189 42.189 -2.79 0 0 0 0.21486 1 8359 8359 0 0 1 4959 7618 2993 2996 5254 5254 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.1129150390625 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 139.96 1 135.32 134.82 135.82 -4.6439 0 0 0 0.21486 1 27633 27633 0 0 1 4960 7618 2993 2996 5255 5255 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.1136779785156 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 157.09 1 152.3 151.8 152.8 -4.7885 0 0 0 0.21486 1 31240 31240 0 0 1 4961 7618 2993 2996 5256 5256 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.12139892578125 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 157.31 1 152.53 152.03 153.03 -4.7885 0 0 0 0.21486 1 31283 31283 0 0 1 4962 7618 2993 2996 5257 5257 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.1212158203125 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 158.53 1 153.74 153.24 154.24 -4.7952 0 0 0 0.21486 1 31526 31526 0 0 1 4963 7618 2993 2996 5258 5258 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.1214294433594 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 34.999 1 32.746 32.246 33.246 -2.2527 0 0 0 0.21486 1 6152 6152 0 0 1 4964 7618 2993 2996 5259 5259 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.1215515136719 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 40.12 1 37.581 37.081 38.081 -2.5398 0 0 0 0.21486 1 7180 7180 0 0 1 4965 7618 2993 2996 5260 5260 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.1136779785156 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 65.911 1 62.453 61.953 62.953 -3.4581 0 0 0 0.21486 1 12344 12344 0 0 1 4966 7618 2993 2996 5261 5261 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.11309814453125 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 150.5 1 145.3 144.8 145.8 -5.1994 0 0 0 0.21486 1 29166 29166 0 0 1 4967 7618 2993 2996 5262 5262 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.1138610839844 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 66.001 1 62.717 62.217 63.217 -3.2832 0 0 0 0.21486 1 12416 12416 0 0 1 4968 7618 2993 2996 5263 5263 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.1226806640625 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 145.12 1 140.17 139.67 140.67 -4.9445 0 0 0 0.21486 1 28050 28050 0 0 1 4969 7618 2993 2996 5264 5264 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.1137390136719 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 146.48 1 141.48 140.98 141.98 -5 0 0 0 0.21486 1 28347 28347 0 0 1 4970 7618 2993 2996 5265 5265 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.1139831542969 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 148.02 1 142.96 142.46 143.46 -5.0595 0 0 0 0.21486 1 28666 28666 0 0 1 4971 7618 2993 2996 5266 5266 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.1134948730469 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 150.08 1 144.96 144.46 145.46 -5.1204 0 0 0 0.21486 1 29083 29083 0 0 1 4972 7618 2993 2996 5267 5267 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.1131591796875 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 150.89 1 145.74 145.24 146.24 -5.1574 0 0 0 0.21486 1 29248 29248 0 0 1 4973 7618 2993 2996 5268 5268 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.3543701171875 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 153.67 1 148.45 147.95 148.95 -5.2209 0 0 0 0.21486 1 29784 29784 0 0 1 4974 7618 2993 2996 5269 5269 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.1139221191406 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 153.75 1 148.53 148.03 149.03 -5.2209 0 0 0 0.21486 1 29801 29801 0 0 1 4975 7618 2993 2996 5270 5270 -0.24150106180752573 CCCHCCEP 8 Unmodified _CCCHCCEP_ 0 0 0 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.1197509765625 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 157.49 1 152.22 151.72 152.72 -5.2712 0 0 0 0.21486 1 30551 30551 0 0 1 4976 7618 2993 2996 5271 5271 -0.24150106180752573 CCCLCFAPC 9 Unmodified _CCCLCFAPC_ 0 0 0 REV__nc|ENSG00000029534|P16157-14|ANK1 REV__nc|ENSG00000029534|P16157-14|ANK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7722473144531 2 481.656698 961.298843 NaN NaN NaN NaN NaN NaN NaN 17.123 1 15.608 15.108 16.108 -1.5148 0 0 0 0.19635 1 2467 2467 0 0 1 + 4977 23933 2994 2997 5272 5272 -0.18335485590148437 CCCNCCCGHC 10 Unmodified _CCCNCCCGHC_ 0 0 0 ENSG00000147570|ENST00000276570|DNAJC5B;DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 349.9935302734375 3 350.073329 1047.19816 NaN NaN NaN NaN NaN NaN NaN 6.7341 1 6.055 5.555 6.555 -0.67913 0 0 0 0.22588 1 537 537 0 0 1 4978 4709 2995 2998 5273 5273 -0.3235520890693806 CCCNCCCGHC 10 Unmodified _CCCNCCCGHC_ 0 0 0 ENSG00000147570|ENST00000276570|DNAJC5B;DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.0726623535156 3 350.073329 1047.19816 NaN NaN NaN NaN NaN NaN NaN 14.406 1 13.292 12.792 13.792 -1.1142 0 0 0 0.22588 1 2158 2158 0 0 1 4979 4709 2995 2998 5274 5274 -0.3235520890693806 CCCNCCCGHC 10 Unmodified _CCCNCCCGHC_ 0 0 0 ENSG00000147570|ENST00000276570|DNAJC5B;DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.0774230957031 3 350.073329 1047.19816 NaN NaN NaN NaN NaN NaN NaN 14.535 1 13.421 12.921 13.921 -1.1142 0 0 0 0.22588 1 2185 2185 0 0 1 4980 4709 2995 2998 5275 5275 -0.3235520890693806 CCCNCCCGHC 10 Unmodified _CCCNCCCGHC_ 0 0 0 ENSG00000147570|ENST00000276570|DNAJC5B;DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 349.8497314453125 3 350.073329 1047.19816 NaN NaN NaN NaN NaN NaN NaN 17.351 1 16.04 15.54 16.54 -1.3109 0 0 0 2.8426 1 2775 2775 0 0 1 4981 4709 2995 2998 5276 5276 -0.3235520890693806 CCCNCCCGHC 10 Unmodified _CCCNCCCGHC_ 0 0 0 ENSG00000147570|ENST00000276570|DNAJC5B;DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.07354736328125 3 350.073329 1047.19816 NaN NaN NaN NaN NaN NaN NaN 22.912 1 21.359 20.859 21.859 -1.5532 0 0 0 0.22588 1 3934 3934 0 0 1 4982 4709 2995 2998 5277 5277 -0.3235520890693806 CCCNCCCGHC 10 Unmodified _CCCNCCCGHC_ 0 0 0 ENSG00000147570|ENST00000276570|DNAJC5B;DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.0728454589844 3 350.073329 1047.19816 NaN NaN NaN NaN NaN NaN NaN 8.2708 1 7.2361 6.7361 7.7361 -1.0347 0 0 0 0.22588 1 762 762 0 0 1 4983 4709 2995 2998 5278 5278 -0.3235520890693806 CCCNCCCGHC 10 Unmodified _CCCNCCCGHC_ 0 0 0 ENSG00000147570|ENST00000276570|DNAJC5B;DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.0730895996094 3 350.073329 1047.19816 NaN NaN NaN NaN NaN NaN NaN 8.5384 1 7.5037 7.0037 8.0037 -1.0347 0 0 0 0.22588 1 806 806 0 0 1 4984 4709 2995 2998 5279 5279 -0.3235520890693806 CCCPCCSCCS 10 Unmodified _CCCPCCSCCS_ 0 0 0 ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 505.79205322265625 2 506.103115 1010.19168 NaN NaN NaN NaN NaN NaN NaN 150.71 1 145.59 145.09 146.09 -5.1204 0 0 0 0.22588 1 29211 29211 0 0 1 4985 9986 2996 2999 5280 5280 -0.3130114685832268 CCCQGMNF 8 Unmodified _CCCQGMNF_ 0 0 0 REV__ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant REV__ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.44696044921875 2 453.142269 904.269985 NaN NaN NaN NaN NaN NaN NaN 12.326 1 11.316 10.816 11.816 -1.0098 0 0 0 0.2396 1 1702 1702 0.12286 0 1 + 4986 13004 2997 3000 5281 5281 -0.18597886894917792 CCCSDPCCPC 10 Unmodified _CCCSDPCCPC_ 0 0 0 REV__ENSG00000143195|ENST00000271417|ILDR2 REV__ENSG00000143195|ENST00000271417|ILDR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.8670349121094 3 345.084 1032.23017 NaN NaN NaN NaN NaN NaN NaN 66.398 1 63.071 62.571 63.571 -3.3268 0 0 0 2.8426 1 12500 12500 0.043787 0.043787 1 + 4987 16705 2998 3001 5282 5282 -0.2846551795216783 CCDFRFVFVLF 11 Unmodified _CCDFRFVFVLF_ 0 0 0 ENST00000301067.11_1_12:49413630-49413729:-|nuORF ENST00000301067.11_1_12:49413630-49413729:-|nuORF ENST00000301067.11_1_12:49413630-49413729:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.90289306640625 3 465.891122 1394.65154 NaN NaN NaN NaN NaN NaN NaN 9.7815 1 8.6879 8.1879 9.1879 -1.0936 0 0 0 0.23698 1 1066 1066 0.094841 0 1 4988 8555 2999 3002 5283 5283 -0.030004526582615654 CCDHEDDCCC 10 Unmodified _CCDHEDDCCC_ 0 0 0 ENSG00000198854|ENST00000368775|C1orf68 ENSG00000198854|ENST00000368775|C1orf68 ENSG00000198854|ENST00000368775|C1orf68 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 573.1639404296875 2 573.126687 1144.23882 NaN NaN NaN NaN NaN NaN NaN 173.4 1 168.61 168.11 169.11 -4.7898 0 0 0 0.22588 1 35369 35369 0 0 1 4989 7509 3000 3003 5284 5284 -0.32752872781975384 CCDLAAKLK 9 Unmodified _CCDLAAKLK_ 0 0 0 REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44 REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.1690673828125 3 322.169996 963.488158 NaN NaN NaN NaN NaN NaN NaN 179.6 1 174.81 174.31 175.31 -4.7898 0 0 0 0.23508 1 36744 36744 1.0715 0.61312 1 + 4990 13879 3001 3004 5285 5285 0.004953692906951801 CCDLAAKLK 9 Unmodified _CCDLAAKLK_ 0 0 0 REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44 REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.16851806640625 3 322.169996 963.488158 NaN NaN NaN NaN NaN NaN NaN 179.85 1 175.06 174.56 175.56 -4.7898 0 0 0 0.23508 1 36794 36794 1.0715 0.61312 1 + 4991 13879 3001 3004 5286 5286 0.004953692906951801 CCDMLELLYFE 11 Unmodified _CCDMLELLYFE_ 0 0 0 REV__nc|ENSG00000112237|P24863-2|CCNC REV__nc|ENSG00000112237|P24863-2|CCNC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24285888671875 3 460.19577 1377.56548 NaN NaN NaN NaN NaN NaN NaN 108.56 1 104.43 103.93 104.93 -4.135 0 0 0 0.22632 1 20888 20888 0.00056442 0 1 + 4992 15287 3002 3005 5287 5287 -0.10819825345924983 CCDSEGCT 8 Unmodified _CCDSEGCT_ 0 0 0 ANKRD55|p.Q337Rfs*111|1|0.31|ENSG00000164512|chr5:56111739-56111739|G/-|frameshift_variant;ENSG00000164512|ENST00000341048|ANKRD55 ANKRD55|p.Q337Rfs*111|1|0.31|ENSG00000164512|chr5:56111739-56111739|G/-|frameshift_variant ANKRD55|p.Q337Rfs*111|1|0.31|ENSG00000164512|chr5:56111739-56111739|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 409.29388427734375 2 409.111689 816.208825 NaN NaN NaN NaN NaN NaN NaN 76.036 1 72.621 72.121 73.121 -3.4151 0 0 0 0.21486 1 14838 14838 2.5775 0.27475 1 4993 165 3003 3006 5288 5288 -0.20663120393339796 CCFCCRCCC 9 Unmodified _CCFCCRCCC_ 0 0 0 REV__ENSG00000183067|ENST00000380588|IGSF5 REV__ENSG00000183067|ENST00000380588|IGSF5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.554443359375 2 522.129467 1042.24438 NaN NaN NaN NaN NaN NaN NaN 166.03 1 161.05 160.55 161.55 -4.9811 0 0 0 0.19635 1 32505 32505 0 0 1 + 4994 18817 3004 3007 5289 5289 -0.27505144004862814 CCGCCCGD 8 Unmodified _CCGCCCGD_ 0 0 0 nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R nc|ENSG00000077238|P24394-3|IL4R nc|ENSG00000077238|P24394-3|IL4R MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 382.0711669921875 2 382.070455 762.126358 NaN NaN NaN NaN NaN NaN NaN 127.06 1 127.06 126.56 127.56 0 0 0 0 0.21486 1 25080 25080 0.79363 0.79363 1 4995 1556 3005 3008 5290 5290 -0.264220569975123 CCGCCGPQCCC 11 Unmodified _CCGCCGPQCCC_ 0 0 0 REV__ENSG00000186860|ENST00000334202|KRTAP17-1 REV__ENSG00000186860|ENST00000334202|KRTAP17-1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 540.1221313476562 2 540.121839 1078.22912 NaN NaN NaN NaN NaN NaN NaN 169.29 1 164.42 163.92 164.92 -4.873 0 0 0 0.22632 1 33427 33427 0 0 1 + 4996 19059 3006 3009 5291 5291 -0.3068605559271873 CCGVRDSQTL 10 Unmodified _CCGVRDSQTL_ 0 0 0 ENST00000463226.1_1_3:113321250-113327360:+|nuORF ENST00000463226.1_1_3:113321250-113327360:+|nuORF ENST00000463226.1_1_3:113321250-113327360:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2653198242188 2 541.241883 1080.46921 NaN NaN NaN NaN NaN NaN NaN 90.88 1 87.021 86.521 87.521 -3.8595 0 0 0 2.8426 1 17784 17784 6.6304 1.7334 1 4997 10098 3007 3010 5292 5292 -0.06780212070998459 CCHCCCAPRC 10 Unmodified _CCHCCCAPRC_ 0 0 0 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 549.79443359375 2 549.665063 1097.31557 NaN NaN NaN NaN NaN NaN NaN 122.37 1 117.84 117.34 118.34 -4.5305 0 0 0 2.8426 1 23559 23559 0.26539 0.25711 1 + 4998 19570 3008 3011 5293 5293 -0.22919307975848824 CCHCLTHRI 9 Unmodified _CCHCLTHRI_ 0 0 0 REV__ENST00000418887.1_1_2:26901215-26901356:-|nuORF REV__ENST00000418887.1_1_2:26901215-26901356:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7783813476562 2 543.243706 1084.47286 0.11715 6.364E-05 0.071628 3.8912E-05 0.18878 0.00010255 543.2431082596962 144.17 0.20349 139.11 139.01 139.21 -5.0671 6 5 2 0 0 0 0.62102 1 27791 27791 11.64 2.2929 1 1046400 + 4999 21487 3009 3012 5294 5294 -0.06599820778160392 CCHCSDCH 8 Unmodified _CCHCSDCH_ 0 0 0 REV__ENSG00000173320|ENST00000308497|STOX2 REV__ENSG00000173320|ENST00000308497|STOX2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75067138671875 2 454.119325 906.224098 NaN NaN NaN NaN NaN NaN NaN 97.951 1 97.951 97.451 98.451 0 0 0 0 0.21486 1 19199 19199 0 0 1 + 5000 18350 3010 3013 5295 5295 -0.23276532077159118 CCHGVSGS 8 Unmodified _CCHGVSGS_ 0 0 0 WNT16|p.R222C|1|0.08|ENSG00000002745|chr7:121338911-121338911|C/T|missense_variant WNT16|p.R222C|1|0.08|ENSG00000002745|chr7:121338911-121338911|C/T|missense_variant WNT16|p.R222C|1|0.08|ENSG00000002745|chr7:121338911-121338911|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2095031738281 2 375.138898 748.263244 NaN NaN NaN NaN NaN NaN NaN 26.39 1 26.39 25.89 26.89 0 0 0 0 0.2396 1 4618 4618 0.12286 0 1 5001 26581 3011 3014 5296 5296 -0.1209574045960835 CCKSLGRF 8 Unmodified _CCKSLGRF_ 0 0 0 CR2|p.R214C|1|0.48|ENSG00000117322|chr1:207468805-207468805|C/T|missense_variant CR2|p.R214C|1|0.48|ENSG00000117322|chr1:207468805-207468805|C/T|missense_variant CR2|p.R214C|1|0.48|ENSG00000117322|chr1:207468805-207468805|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2240905761719 2 457.222765 912.430978 -0.39757 -0.00018178 -0.19052 -8.711E-05 -0.58809 -0.00026889 457.2226833148231 17.057 0.66747 15.841 15.423 16.09 -1.2159 49 18 4 0 0 0 0.71876 1 2666 2666 11.64 3.047 1 4265300 5002 720 3012 3015 5297 5297 -0.028740531950006698 CCLCCCFY 8 Unmodified _CCLCCCFY_ 0 0 0 REV__ENSG00000147570|ENST00000276570|DNAJC5B REV__ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7236328125 2 479.143423 956.272294 NaN NaN NaN NaN NaN NaN NaN 126.34 1 121.55 121.05 122.05 -4.7958 0 0 0 0.21486 1 24249 24249 0.79363 0.10326 1 + 5003 16940 3013 3016 5298 5298 -0.2075917448147493 CCLCSFTFY 9 Unmodified _CCLCSFTFY_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7807006835938 2 543.708299 1085.40205 NaN NaN NaN NaN NaN NaN NaN 124.7 1 119.94 119.44 120.44 -4.7681 0 0 0 0.19656 1 23948 23948 0.40827 0.395 1 5004 7385 3014 3017 5299 5299 -0.13723958606306041 CCLSVRYI 8 Unmodified _CCLSVRYI_ 0 0 0 REV__nc|ENSG00000021461|Q9HB55-4|CYP3A43 REV__nc|ENSG00000021461|Q9HB55-4|CYP3A43 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7395935058594 2 478.738248 955.461943 NaN NaN NaN NaN NaN NaN NaN 8.0393 1 7.3601 6.8601 7.8601 -0.67913 0 0 0 0.21486 1 794 794 0.6015 0 1 + 5005 23929 3015 3018 5300 5300 -0.017568998807632852 CCNEFPIVY 9 Unmodified _CCNEFPIVY_ 0 0 0 REV__ENSG00000089876|ENST00000284690|DHX32 REV__ENSG00000089876|ENST00000284690|DHX32 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7939453125 2 544.232996 1086.45144 0.75771 0.00041237 0.31283 0.00017025 1.0705 0.00058262 544.7337939489755 78.833 1.0029 78.833 78.579 79.582 0 42 28 2 0 0 0 0.55979 1 15447 15447 15.847 0 1 1728300 + 5006 14538 3016 3019 5301 5301 -0.08832927325875062 CCNSDNRSF 9 Unmodified _CCNSDNRSF_ 0 0 0 REV__ENST00000306749.3_1_17:80036222-80036480:-|nuORF REV__ENST00000306749.3_1_17:80036222-80036480:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6964721679688 2 523.194933 1044.37531 0.18114 9.4773E-05 -3.2515 -0.0017012 -3.0703 -0.0016064 523.1958942206259 119.94 0.91307 119.94 119.58 120.5 0 49 25 3 0 0 0 0.55728 1 23710 23710 0.40827 0.2854 1 4469700 + 5007 20442 3017 3020 5302 5302 -0.14509931173301993 CCNSDNRSF 9 Unmodified _CCNSDNRSF_ 0 0 0 REV__ENST00000306749.3_1_17:80036222-80036480:-|nuORF REV__ENST00000306749.3_1_17:80036222-80036480:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6959228515625 2 523.194933 1044.37531 0.23428 0.00012257 -0.98838 -0.00051712 -0.7541 -0.00039454 523.1944730794783 89.863 0.94919 86.085 85.414 86.363 -3.7779 34 26 2 0 0 0 0.55728 1 17189 17189 0.073264 0 1 1188800 + 5008 20442 3017 3020 5303 5303 -0.14509931173301993 CCPCCSKWYT 10 Unmodified _CCPCCSKWYT_ 0 0 0 REV__ENSG00000102891|ENST00000219162|MT4 REV__ENSG00000102891|ENST00000219162|MT4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 596.7926025390625 2 597.215965 1192.41738 NaN NaN NaN NaN NaN NaN NaN 169.66 1 164.73 164.23 165.23 -4.9295 0 0 0 2.8426 1 33511 33511 0.26539 0.19213 1 + 5009 14851 3018 3021 5304 5304 -0.17113415080780214 CCPPCGLG 8 Unmodified _CCPPCGLG_ 0 0 0 sp|F5HAM0|UL144_HCMVMMembraneglycoproteinUL144OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL144PE=3SV=1 sp|F5HAM0|UL144_HCMVMMembraneglycoproteinUL144OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL144PE=3SV=1 sp|F5HAM0|UL144_HCMVMMembraneglycoproteinUL144OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL144PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2135925292969 2 375.142595 748.270637 NaN NaN NaN NaN NaN NaN NaN 109.79 1 105.42 104.92 105.92 -4.3776 0 0 0 0.2396 1 21636 21636 0.30703 0 1 5010 25717 3019 3022 5305 5305 -0.1135672418354261 CCSCCPAECE 10 Unmodified _CCSCCPAECE_ 0 0 0 ENSG00000087250|ENST00000200691|MT3;ENST00000566576.1_1_16:56623516-56624858:+|nuORF;ENST00000566451.1_1_16:56624711-56624858:+|nuORF ENSG00000087250|ENST00000200691|MT3 ENSG00000087250|ENST00000200691|MT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7000732421875 2 524.139066 1046.26358 0.18595 9.7462E-05 3.0577 0.0016026 3.2436 0.0017001 524.6439248541241 157.44 0.13748 157.44 157.38 157.52 0 5 3 2 0 0 0 0.91149 1 31588 31588 0.40072 0 1 1241700 5011 1709 3020 3023 5306 5306 -0.25770192908612444 CCSDHQHCCPQ 11 Unmodified _CCSDHQHCCPQ_ 0 0 0 nc|ENSG00000030582|P28799-3|GRN;ENSG00000030582|ENST00000053867|GRN nc|ENSG00000030582|P28799-3|GRN nc|ENSG00000030582|P28799-3|GRN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.770263671875 2 630.704285 1259.39402 NaN NaN NaN NaN NaN NaN NaN 166.2 1 161.25 160.75 161.75 -4.9484 0 0 0 0.23698 1 32539 32539 1.1933 0.12188 1 5012 1156 3021 3024 5307 5307 -0.22530460865391433 CCSLACCHPE 10 Unmodified _CCSLACCHPE_ 0 0 0 REV__ENSG00000215455|ENST00000400375|KRTAP10-1 REV__ENSG00000215455|ENST00000400375|KRTAP10-1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2684326171875 2 533.184665 1064.35478 NaN NaN NaN NaN NaN NaN NaN 128.84 1 128.84 128.34 129.34 0 0 0 0 2.8426 1 25446 25446 0.26539 0 1 + 5013 19690 3022 3025 5308 5308 -0.1748256114897231 CCSPCCCT 8 Unmodified _CCSPCCCT_ 0 0 0 REV__ENSG00000204880|ENST00000333822|KRTAP4-8;REV__ENSG00000198271|ENST00000343246|KRTAP4-5 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 410.1014099121094 2 410.101755 818.188958 NaN NaN NaN NaN NaN NaN NaN 147.06 1 147.06 146.56 147.56 0 0 0 0 0.21486 1 29415 29415 0 0 1 + 5014 19569;19402 3023 3026 5309 5309 -0.22740910929337588 CCSSCECMSEY 11 Unmodified _CCSSCECMSEY_ 0 0 0 REV__ENST00000498611.5_1_22:50657800-50659866:-|nuORF REV__ENST00000498611.5_1_22:50657800-50659866:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7816162109375 2 622.67347 1243.33239 NaN NaN NaN NaN NaN NaN NaN 121.19 1 121.19 120.69 121.69 0 0 0 0 0.23698 1 23888 23888 0.35063 0.35063 1 + 5015 22416 3024 3027 5310 5310 -0.2795457339955192 CCSSCECMSEY 11 Unmodified _CCSSCECMSEY_ 0 0 0 REV__ENST00000498611.5_1_22:50657800-50659866:-|nuORF REV__ENST00000498611.5_1_22:50657800-50659866:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.777587890625 2 622.67347 1243.33239 NaN NaN NaN NaN NaN NaN NaN 153.56 1 148.79 148.29 149.29 -4.7684 0 0 0 0.23698 1 30517 30517 0.35063 0.35063 1 + 5016 22416 3024 3027 5311 5311 -0.2795457339955192 CCSSCECMSEY 11 Unmodified _CCSSCECMSEY_ 0 0 0 REV__ENST00000498611.5_1_22:50657800-50659866:-|nuORF REV__ENST00000498611.5_1_22:50657800-50659866:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7802124023438 2 622.67347 1243.33239 NaN NaN NaN NaN NaN NaN NaN 122.82 1 118.09 117.59 118.59 -4.731 0 0 0 0.23698 1 23589 23589 0.35063 0.35063 1 + 5017 22416 3024 3027 5312 5312 -0.2795457339955192 CCSSCECMSEY 11 Unmodified _CCSSCECMSEY_ 0 0 0 REV__ENST00000498611.5_1_22:50657800-50659866:-|nuORF REV__ENST00000498611.5_1_22:50657800-50659866:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.753662109375 2 622.67347 1243.33239 NaN NaN NaN NaN NaN NaN NaN 154.37 1 149.15 148.65 149.65 -5.2209 0 0 0 0.23698 1 29929 29929 0.35063 0.35063 1 + 5018 22416 3024 3027 5313 5313 -0.2795457339955192 CCSSECCY 8 Unmodified _CCSSECCY_ 0 0 0 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.11376953125 2 449.115917 896.217281 NaN NaN NaN NaN NaN NaN NaN 27.411 1 25.656 25.156 26.156 -1.7552 0 0 0 0.21486 1 4586 4586 0.79363 0.79363 1 + 5019 19402 3025 3028 5314 5314 -0.23497889748387024 CCVRCCCCC 9 Unmodified _CCVRCCCCC_ 0 0 0 REV__ENSG00000157765|ENST00000382051|SLC34A2 REV__ENSG00000157765|ENST00000382051|SLC34A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 498.2798767089844 2 498.129467 994.244381 NaN NaN NaN NaN NaN NaN NaN 124.17 1 124.17 123.67 124.67 0 0 0 0 0.19635 1 24481 24481 0 0 1 + 5020 17308 3026 3029 5315 5315 -0.25297144004866823 CCVYFHKI 8 Unmodified _CCVYFHKI_ 0 0 0 ENSG00000198919|ENST00000361582|DZIP3;DZIP3|p.K294Sfs*5|1|0.43|ENSG00000198919|chr3:108634931-108634931|A/-|frameshift_variant;nc|ENSG00000198919|Q86Y13-2|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 338.16351318359375 3 338.162953 1011.46703 NaN NaN NaN NaN NaN NaN NaN 169.36 1 164.49 163.99 164.99 -4.873 0 0 0 0.21486 1 33445 33445 1.8442 0.6509 1 5021 7526 3027 3030 5316 5316 -0.03824596018171178 CDCGGGADCD 10 Unmodified _CDCGGGADCD_ 0 0 0 ENSG00000162591|ENST00000356575|MEGF6;nc|ENSG00000162591|O75095-2|MEGF6 ENSG00000162591|ENST00000356575|MEGF6 ENSG00000162591|ENST00000356575|MEGF6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2384948730469 2 458.117503 914.220452 NaN NaN NaN NaN NaN NaN NaN 76.418 1 73.003 72.503 73.503 -3.4151 0 0 0 0.22588 1 14916 14916 0 0 1 5022 5345 3028 3031 5317 5317 -0.24008923370035973 CDCGGGADCD 10 Unmodified _CDCGGGADCD_ 0 0 0 ENSG00000162591|ENST00000356575|MEGF6;nc|ENSG00000162591|O75095-2|MEGF6 ENSG00000162591|ENST00000356575|MEGF6 ENSG00000162591|ENST00000356575|MEGF6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2383117675781 2 458.117503 914.220452 NaN NaN NaN NaN NaN NaN NaN 71.024 1 67.444 66.944 67.944 -3.5798 0 0 0 0.22588 1 13391 13391 0 0 1 5023 5345 3028 3031 5318 5318 -0.24008923370035973 CDDCEYHQVFT 11 Unmodified _CDDCEYHQVFT_ 0 0 0 REV__nc|ENSG00000184617|A6NDX5|ZNF840P REV__nc|ENSG00000184617|A6NDX5|ZNF840P MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7545471191406 3 453.837522 1358.49074 NaN NaN NaN NaN NaN NaN NaN 148.63 1 143.92 143.42 144.42 -4.7095 0 0 0 0.22632 1 29515 29515 0.50596 0.50596 1 + 5024 24206 3029 3032 5319 5319 -0.17416871832983816 CDDWSDEAHC 10 Unmodified _CDDWSDEAHC_ 0 0 0 ENST00000502726.5_1_4:47685742-47840047:-|nuORF;ENST00000503821.5_1_4:47663725-47840047:-|nuORF;nc|ENSG00000145244|Q9Y5Q5-2|CORIN;ENSG00000145244|ENST00000273857|CORIN ENST00000502726.5_1_4:47685742-47840047:-|nuORF ENST00000502726.5_1_4:47685742-47840047:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2630615234375 2 590.687138 1179.35972 0.52253 0.00030865 -3.3584 -0.0019838 -2.8359 -0.0016751 590.6864683961412 140.82 0.1384 136.17 136.09 136.23 -4.6493 6 3 2 0 0 0 1.1344 1 27795 27795 0.043787 0.043787 1 1098700 5025 4599 3030 3033 5320 5320 -0.2227826248099518 CDESQDQVY 9 Unmodified _CDESQDQVY_ 0 0 0 REV__nc|ENSG00000169760|Q8N2Q7|NLGN1 REV__nc|ENSG00000169760|Q8N2Q7|NLGN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7774047851562 2 543.705854 1085.39715 NaN NaN NaN NaN NaN NaN NaN 44.673 1 44.673 44.173 45.173 0 0 0 0 0.1963 1 8386 8386 0.40827 0 1 + 5026 24158 3031 3034 5321 5321 -0.14212847943713314 CDIVITHLE 9 Unmodified _CDIVITHLE_ 0 0 0 REV__ENSG00000155850|ENST00000286298|SLC26A2 REV__ENSG00000155850|ENST00000286298|SLC26A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2676391601562 2 521.765517 1041.51648 0.21749 0.00011348 0.51296 0.00026765 0.73045 0.00038112 521.7655962321908 127.21 0.21055 122.51 122.36 122.57 -4.6998 6 5 2 0 0 0 0.74655 1 24472 24472 21.747 4.8044 1 558130 + 5027 17228 3032 3035 5322 5322 -0.00261609528365625 CDMVLELNA 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))DM(Oxidation (M))VLELNA_ C(1)DMVLELNA CDM(1)VLELNA C(48)DMVLELNA CDM(48)VLELNA 0 1 1 PRPF31|p.A194V|1|0.27|ENSG00000105618|chr19:54123802-54123802|C/T|missense_variant PRPF31|p.A194V|1|0.27|ENSG00000105618|chr19:54123802-54123802|C/T|missense_variant PRPF31|p.A194V|1|0.27|ENSG00000105618|chr19:54123802-54123802|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.28271484375 2 540.738642 1079.46273 0.41327 0.00022347 -0.60333 -0.00032624 -0.19006 -0.00010277 540.7384915523945 108.86 0.77916 108.86 108.45 109.23 0 47 21 3 0 0 0 0.12183 1 21398 21398 48.346 19.859 1 5009800 5028 12832 3033 3036 5323 5323 12 117 -0.07382150022385758 CDMVLELNA 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))DM(Oxidation (M))VLELNA_ C(1)DMVLELNA CDM(1)VLELNA C(57)DMVLELNA CDM(57)VLELNA 0 1 1 PRPF31|p.A194V|1|0.27|ENSG00000105618|chr19:54123802-54123802|C/T|missense_variant PRPF31|p.A194V|1|0.27|ENSG00000105618|chr19:54123802-54123802|C/T|missense_variant PRPF31|p.A194V|1|0.27|ENSG00000105618|chr19:54123802-54123802|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2640380859375 2 540.738642 1079.46273 0.044419 2.4019E-05 -0.29978 -0.0001621 -0.25536 -0.00013808 540.738617489188 113.18 0.79237 108.73 108.29 109.08 -4.4539 61 21 4 0 0 0 0.14834 1 22318 22318 57.471 19.497 1 8624100 5029 12832 3033 3036 5324 5324 12 117 -0.07382150022385758 CDMVLELNA 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))DM(Oxidation (M))VLELNA_ C(1)DMVLELNA CDM(1)VLELNA C(48)DMVLELNA CDM(48)VLELNA 0 1 1 PRPF31|p.A194V|1|0.27|ENSG00000105618|chr19:54123802-54123802|C/T|missense_variant PRPF31|p.A194V|1|0.27|ENSG00000105618|chr19:54123802-54123802|C/T|missense_variant PRPF31|p.A194V|1|0.27|ENSG00000105618|chr19:54123802-54123802|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.276123046875 2 540.738642 1079.46273 0.65172 0.00035241 -1.044 -0.00056455 -0.39233 -0.00021215 540.7383198929663 113.14 0.80664 108.87 108.43 109.23 -4.2725 63 22 4 0 0 0 0.12183 1 21778 21778 48.346 16.04 1 6741300 5030 12832 3033 3036 5325 5325 12 117 -0.07382150022385758 CDNGKCLPGP 10 Unmodified _CDNGKCLPGP_ 0 0 0 ENST00000590278.1_1_19:33696051-33698478:+|nuORF;ENSG00000130881|ENST00000253193|LRP3 ENST00000590278.1_1_19:33696051-33698478:+|nuORF ENST00000590278.1_1_19:33696051-33698478:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.159912109375 3 335.149372 1002.42629 -0.095525 -3.2015E-05 1.952 0.00065422 1.8565 0.00062221 335.4847668793147 48.178 0.73802 48.178 47.965 48.703 0 66 20 5 0 0 0 0.45112 1 9160 9160 0.063865 0 1 3395200 5031 3648 3034 3037 5326 5326 -0.07482982128431104 CDPRRWTPWR 10 Unmodified _CDPRRWTPWR_ 0 0 0 ENST00000585494.5_1_18:55217915-55217999:-|nuORF ENST00000585494.5_1_18:55217915-55217999:-|nuORF ENST00000585494.5_1_18:55217915-55217999:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2295227050781 3 458.227896 1371.66186 NaN NaN NaN NaN NaN NaN NaN 146.4 1 141.29 140.79 141.79 -5.1108 0 0 0 2.8426 1 28310 28310 0.20733 0.096286 1 5032 11536 3035 3038 5327 5327 -0.009107088888185899 CDRCRSGY 8 Unmodified _CDRCRSGY_ 0 0 0 LAMC2|p.V488Sfs*24|1|0.32|ENSG00000058085|chr1:183227688-183227688|G/-|frameshift_variant;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2 LAMC2|p.V488Sfs*24|1|0.32|ENSG00000058085|chr1:183227688-183227688|G/-|frameshift_variant LAMC2|p.V488Sfs*24|1|0.32|ENSG00000058085|chr1:183227688-183227688|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 320.1704406738281 3 320.465583 958.374919 NaN NaN NaN NaN NaN NaN NaN 84.427 1 84.427 83.927 84.927 0 0 0 0 0.21486 1 16468 16468 0.45834 0 1 5033 1290 3036 3039 5328 5328 -0.10593306102487077 CDTDGDCA 8 Unmodified _CDTDGDCA_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 400.1151428222656 2 400.115286 798.216019 NaN NaN NaN NaN NaN NaN NaN 170.25 1 165.38 164.88 165.88 -4.873 0 0 0 0.21486 1 33681 33681 0.79363 0 1 + 5034 16401 3037 3040 5329 5329 -0.19116064521290355 CDTGECYCEE 10 Unmodified _CDTGECYCEE_ 0 0 0 ENSG00000120332|ENST00000239462|TNN ENSG00000120332|ENST00000239462|TNN ENSG00000120332|ENST00000239462|TNN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3167114257812 2 576.169932 1150.32531 0.28714 0.00016544 0.60402 0.00034802 0.89116 0.00051346 576.6718140405113 119.62 0.17548 119.62 119.55 119.72 0 5 4 2 0 0 0 0.91149 1 23582 23582 0.40072 0 1 767850 5035 3130 3038 3041 5330 5330 -0.24383846684145283 CEAGQFYV 8 Unmodified _CEAGQFYV_ 0 0 0 REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2249755859375 2 458.697103 915.379654 NaN NaN NaN NaN NaN NaN NaN 26.451 1 26.451 25.951 26.951 0 0 0 0 0.23182 1 4631 4631 3.5871 2.9602 1 + 5036 18690 3039 3042 5331 5331 -0.08142098688074384 CEASYSYDQ 9 Unmodified _CEASYSYDQ_ 0 0 0 sp|F5HC14|UL119_HCMVMViralFc-gammareceptor-likeproteinUL119OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL119/UL118PE=3SV=1 sp|F5HC14|UL119_HCMVMViralFc-gammareceptor-likeproteinUL119OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL119/UL118PE=3SV=1 sp|F5HC14|UL119_HCMVMViralFc-gammareceptor-likeproteinUL119OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL119/UL118PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2715454101562 2 533.195122 1064.37569 -0.015539 -8.2853E-06 0.89557 0.00047751 0.88003 0.00046923 533.1955333256528 95.75 1.0706 95.75 95.35 96.421 0 88 30 4 0 0 0 0.5428 1 18704 18704 4.897 0.18109 1 39843000 5037 25720 3040 3043 5332 5332 -0.15392232972453712 CECCEHVSCNC 11 Unmodified _CECCEHVSCNC_ 0 0 0 REV__nc|ENSG00000116678|P48357-5|LEPR REV__nc|ENSG00000116678|P48357-5|LEPR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 615.1795043945312 2 615.179254 1228.34395 NaN NaN NaN NaN NaN NaN NaN 8.9417 1 8.9417 8.4417 9.4417 0 0 0 0 0.23698 1 985 985 0 0 1 + 5038 15489 3041 3044 5333 5333 -0.2610833158553305 CECCEHVSCNC 11 Unmodified _CECCEHVSCNC_ 0 0 0 REV__nc|ENSG00000116678|P48357-5|LEPR REV__nc|ENSG00000116678|P48357-5|LEPR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 615.1791381835938 2 615.179254 1228.34395 NaN NaN NaN NaN NaN NaN NaN 178.91 1 178.91 178.41 179.41 0 0 0 0 0.22632 1 37060 37060 0 0 1 + 5039 15489 3041 3044 5334 5334 -0.2610833158553305 CECCEHVSCNC 11 Unmodified _CECCEHVSCNC_ 0 0 0 REV__nc|ENSG00000116678|P48357-5|LEPR REV__nc|ENSG00000116678|P48357-5|LEPR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 615.4094848632812 2 615.179254 1228.34395 NaN NaN NaN NaN NaN NaN NaN 178.98 1 178.98 178.48 179.48 0 0 0 0 0.22632 1 37074 37074 0 0 1 + 5040 15489 3041 3044 5335 5335 -0.2610833158553305 CECCEHVSCNC 11 Unmodified _CECCEHVSCNC_ 0 0 0 REV__nc|ENSG00000116678|P48357-5|LEPR REV__nc|ENSG00000116678|P48357-5|LEPR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 615.177978515625 2 615.179254 1228.34395 NaN NaN NaN NaN NaN NaN NaN 7.8146 1 6.7998 6.2998 7.2998 -1.0148 0 0 0 0.23698 1 676 676 0 0 1 + 5041 15489 3041 3044 5336 5336 -0.2610833158553305 CEDESEHHRHR 11 Unmodified _CEDESEHHRHR_ 0 0 0 REV__nc|ENSG00000132153|Q7L2E3-3|DHX30 REV__nc|ENSG00000132153|Q7L2E3-3|DHX30 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.732421875 3 478.869096 1433.58546 NaN NaN NaN NaN NaN NaN NaN 15.657 1 15.657 15.157 16.157 0 0 0 0 0.22632 1 2398 2398 0.026206 0 1 + 5042 16099 3042 3045 5337 5337 -0.11399177246767067 CEDESEHHRHR 11 Unmodified _CEDESEHHRHR_ 0 0 0 REV__nc|ENSG00000132153|Q7L2E3-3|DHX30 REV__nc|ENSG00000132153|Q7L2E3-3|DHX30 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7374267578125 3 478.869096 1433.58546 NaN NaN NaN NaN NaN NaN NaN 16.879 1 15.663 15.163 16.163 -1.2159 0 0 0 0.22632 1 2679 2679 0.026206 0 1 + 5043 16099 3042 3045 5338 5338 -0.11399177246767067 CEENEASDRY 10 Unmodified _CEENEASDRY_ 0 0 0 REV__CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant REV__CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.2998352050781 3 405.82427 1214.45098 -0.53107 -0.00021552 -1.6401 -0.00066559 -2.1712 -0.00088111 405.823604589739 51.972 0.41339 48.92 48.658 49.072 -3.0517 16 11 2 0 0 0 0.91149 1 9560 9560 0.69767 0.53834 1 560710 + 5044 13249 3043 3046 5339 5339 -0.14766675512009897 CEENEASDRY 10 Unmodified _CEENEASDRY_ 0 0 0 REV__CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant REV__CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 405.82427 1214.45098 0.027802 1.1283E-05 -2.5191 -0.0010223 -2.4913 -0.001011 405.8232745930833 51.906 0.21045 48.86 48.784 48.995 -3.0453 -0.029748 -0.00058795 NaN 0.69767 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 656490 + 5045 13249 3043 3046 -0.14766675512009897 CEFRSLYY 8 Unmodified _CEFRSLYY_ 0 0 0 PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant;ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT;PTPRT|p.S1164N|1|0.27|ENSG00000196090|chr20:42104618-42104618|C/T|missense_variant PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2816162109375 2 540.744585 1079.47462 0.28848 0.000156 -3.2864 -0.0017771 -2.9979 -0.0016211 540.7429168622277 130.39 0.10338 130.39 130.34 130.44 0 4 2 2 0 0 0 0.74398 1 25777 25777 7.9102 0 1 1968900 5046 7232 3044 3047 5340 5340 -0.061941652169025474 CEGCDCDGN 9 Unmodified _CEGCDCDGN_ 0 0 0 REV__ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant REV__ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23065185546875 2 458.117503 914.220452 NaN NaN NaN NaN NaN NaN NaN 72.665 1 69.354 68.854 69.854 -3.3107 0 0 0 0.19626 1 14161 14161 0.20686 0.20686 1 + 5047 15411 3045 3048 5341 5341 -0.24008923370024604 CEGCDCDGN 9 Unmodified _CEGCDCDGN_ 0 0 0 REV__ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant REV__ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2315673828125 2 458.117503 914.220452 NaN NaN NaN NaN NaN NaN NaN 73.428 1 70.117 69.617 70.617 -3.3107 0 0 0 0.19631 1 14316 14316 0.20686 0.20686 1 + 5048 15411 3045 3048 5342 5342 -0.24008923370024604 CEGCDCDGN 9 Unmodified _CEGCDCDGN_ 0 0 0 REV__ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant REV__ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2241516113281 2 458.117503 914.220452 NaN NaN NaN NaN NaN NaN NaN 66.037 1 62.754 62.254 63.254 -3.2832 0 0 0 0.19626 1 12423 12423 0.40827 0.26837 1 + 5049 15411 3045 3048 5343 5343 -0.24008923370024604 CEHILADTV 9 Unmodified _CEHILADTV_ 0 0 0 RAG1|p.P303T|1|0.4|ENSG00000166349|chr11:36574211-36574211|C/A|missense_variant RAG1|p.P303T|1|0.4|ENSG00000166349|chr11:36574211-36574211|C/A|missense_variant RAG1|p.P303T|1|0.4|ENSG00000166349|chr11:36574211-36574211|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.16461181640625 3 334.163787 999.469531 NaN NaN NaN NaN NaN NaN NaN 126.78 1 122.17 121.67 122.67 -4.6172 0 0 0 0.23508 1 25002 25002 2.7352 0 1 5050 12858 3046 3049 5344 5344 -0.030224690795080278 CEMQQCWHELK 11 Unmodified _CEMQQCWHELK_ 0 0 0 REV__DLGAP3|p.R818C|1|0.4|ENSG00000116544|chr1:34868638-34868638|G/A|missense_variant REV__DLGAP3|p.R818C|1|0.4|ENSG00000116544|chr1:34868638-34868638|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74267578125 3 478.87028 1433.58901 NaN NaN NaN NaN NaN NaN NaN 143.77 1 143.77 143.27 144.27 0 0 0 0 0.23528 1 28700 28700 4.1166 2.2103 1 + 5051 13694 3047 3050 5345 5345 -0.11043966788724902 CESHRHTPMY 10 Unmodified _CESHRHTPMY_ 0 0 0 OR4D9|p.L55R|1|0.07|ENSG00000172742|chr11:59515076-59515076|T/G|missense_variant OR4D9|p.L55R|1|0.07|ENSG00000172742|chr11:59515076-59515076|T/G|missense_variant OR4D9|p.L55R|1|0.07|ENSG00000172742|chr11:59515076-59515076|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.764892578125 2 630.766057 1259.51756 NaN NaN NaN NaN NaN NaN NaN 34.939 1 32.546 32.046 33.046 -2.3938 0 0 0 2.8426 1 6428 6428 3.8763 3.8704 1 5052 12729 3048 3051 5346 5346 -0.1018171843111304 CEWSVPSL 8 Unmodified _CEWSVPSL_ 0 0 0 REV__nc|ENSG00000138798|P01133-2|EGF REV__nc|ENSG00000138798|P01133-2|EGF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2331848144531 2 460.712753 919.410954 NaN NaN NaN NaN NaN NaN NaN 127.38 1 122.68 122.18 123.18 -4.6998 0 0 0 0.23782 1 24501 24501 0.12286 0 1 + 5053 16494 3049 3052 5347 5347 -0.05197525653977664 CEWWEPLD 8 Unmodified _CEWWEPLD_ 0 0 0 REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013854980469 3 359.816387 1076.42733 0.051366 1.8482E-05 -0.20186 -7.2632E-05 -0.15049 -5.415E-05 359.81631676672083 81.596 0.55694 81.596 81.369 81.926 0 21 15 2 0 0 0 1.0248 1 15861 15861 6.7232 2.3939 1 1633200 + 5054 13404 3050 3053 5348 5348 -0.10782444487881548 CEYMGEDLY 9 Unmodified _CEYMGEDLY_ 0 0 0 REV__ENST00000551620.5_1_12:69979244-69983508:+|nuORF REV__ENST00000551620.5_1_12:69979244-69983508:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 374.848876953125 3 374.808792 1121.40455 NaN NaN NaN NaN NaN NaN NaN 74.302 1 74.302 73.802 74.802 0 0 0 0 0.23508 1 14425 14425 1.1933 0 1 + 5055 22936 3051 3054 5349 5349 -0.1512983166765025 CFARRFRD 8 Unmodified _CFARRFRD_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5577087402344 3 357.515265 1069.52397 -2.1592 -0.00077195 0.82041 0.00029331 -1.3388 -0.00047864 357.51554590418334 16.388 1.6605 15.034 14.341 16.001 -1.3534 96 47 3 0 0 0 0.75713 1 2342 2342 6.2058 6.2058 1 4294300 + 5056 18018 3052 3055 5350 5350 -0.00801412417422398 CFCCCFGF 8 Unmodified _CFCCCFGF_ 0 0 0 ENST00000560400.1_1_17:40007277-40007520:-|nuORF ENST00000560400.1_1_17:40007277-40007520:-|nuORF ENST00000560400.1_1_17:40007277-40007520:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.250244140625 2 465.144281 928.274008 NaN NaN NaN NaN NaN NaN NaN 129.5 1 124.88 124.38 125.38 -4.6292 0 0 0 0.2396 1 25521 25521 0.62683 0.62683 1 5057 11288 3053 3056 5351 5351 -0.19299797401197338 CFCCCSCWS 9 Unmodified _CFCCCSCWS_ 0 0 0 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 520.651611328125 2 521.141412 1040.26827 NaN NaN NaN NaN NaN NaN NaN 165.21 1 160.26 159.76 160.76 -4.9484 0 0 0 0.19635 1 32268 32268 0 0 1 5058 7387 3054 3057 5352 5352 -0.25025263975203416 CFIIIIISYFF 11 Unmodified _CFIIIIISYFF_ 0 0 0 OR5I1|p.Y292*|1|0.03|ENSG00000167825|chr11:55935527-55935528|AA/-|frameshift_variant;ENSG00000167825|ENST00000301532|OR5I1 OR5I1|p.Y292*|1|0.03|ENSG00000167825|chr11:55935527-55935528|AA/-|frameshift_variant OR5I1|p.Y292*|1|0.03|ENSG00000167825|chr11:55935527-55935528|AA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23260498046875 3 460.254166 1377.74067 0.060468 2.7831E-05 -0.22603 -0.00010403 -0.16557 -7.6202E-05 460.588307193155 117.2 0.83487 112.71 112.21 113.05 -4.486 48 23 3 0 0 0 0.88957 1 23088 23088 3.0723 3.0723 1 3003400 5059 5853 3055 3058 5353 5353 0.06690705572918887 CFIINELK 8 Unmodified _CFIINELK_ 0 0 0 REV__ENST00000341049.6_1_7:116199659-116199932:+|nuORF REV__ENST00000341049.6_1_7:116199659-116199932:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2684631347656 2 490.267696 978.520839 NaN NaN NaN NaN NaN NaN NaN 166.99 1 162.2 161.7 162.7 -4.7898 0 0 0 0.22665 1 33619 33619 1.7423 0.52744 1 + 5060 20708 3056 3059 5354 5354 0.030718996852101554 CFKTGSSDI 9 Unmodified _CFKTGSSDI_ 0 0 0 REV__ENST00000561269.2_1_15:101186254-101186332:-|nuORF REV__ENST00000561269.2_1_15:101186254-101186332:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7342834472656 2 479.220943 956.427332 NaN NaN NaN NaN NaN NaN NaN 76.788 1 73.373 72.873 73.873 -3.4151 0 0 0 0.19638 1 14986 14986 4.7159 0 1 + 5061 23051 3057 3060 5355 5355 -0.05262444487891571 CFLQNGIY 8 Unmodified _CFLQNGIY_ 0 0 0 REV__PI4KB|p.R163Q|1|0.09|ENSG00000143393|chr1:151315994-151315994|C/T|missense_variant REV__PI4KB|p.R163Q|1|0.09|ENSG00000143393|chr1:151315994-151315994|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7425537109375 2 479.228571 956.442588 NaN NaN NaN NaN NaN NaN NaN 81.795 1 78.238 77.738 78.738 -3.557 0 0 0 0.21486 1 15980 15980 11.114 0.93107 1 + 5062 24466 3058 3061 5356 5356 -0.03737532900026963 CFRRRRLTH 9 Unmodified _CFRRRRLTH_ 0 0 0 REV__ENST00000506902.1_1_5:60458082-60475553:+|nuORF REV__ENST00000506902.1_1_5:60458082-60475553:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7774047851562 2 622.848907 1243.68326 NaN NaN NaN NaN NaN NaN NaN 10.065 1 9.2711 8.7711 9.7711 -0.79424 0 0 0 0.23508 1 1224 1224 0.6015 0.076735 1 + 5063 22494 3059 3062 5357 5357 0.07116720930571319 CFSFFYHMY 9 Unmodified _CFSFFYHMY_ 0 0 0 nc|ENSG00000139915|Q7Z553|MDGA2;MDGA2|p.I945Lfs*8|1|0.13|ENSG00000139915|chr14:46841973-46841973|A/-|frameshift_variant;ENSG00000139915|ENST00000399232|MDGA2;nc|ENSG00000139915|Q7Z553-2|MDGA2;ENST00000557238.5_1_14:47341050-47530490:-|nuORF;ENST00000557516.1_1_14:47342591-47351346:-|nuORF nc|ENSG00000139915|Q7Z553|MDGA2 nc|ENSG00000139915|Q7Z553|MDGA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.764404296875 2 622.748813 1243.48307 NaN NaN NaN NaN NaN NaN NaN 129.95 1 125.17 124.67 125.67 -4.7725 0 0 0 0.19634 1 25002 25002 0.40827 0 1 5064 4270 3060 3063 5358 5358 -0.12892934571914338 CFSKRKKK 8 Unmodified _CFSKRKKK_ 0 0 0 ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant;ENSG00000154262|ENST00000284425|ABCA6;nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9 ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant;nc|ENSG00000154258|Q8IUA7-4|ABCA9 nc|ENSG00000154258|Q8IUA7-4|ABCA9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 512.8099975585938 2 512.807854 1023.60115 NaN NaN NaN NaN NaN NaN NaN 9.5986 1 8.8044 8.3044 9.3044 -0.79424 0 0 0 0.2396 1 1123 1123 0 0 1 5065 5003;13 3061 3064 5359 5359 0.09029805798911639 CFVCHLAAP 9 Unmodified _CFVCHLAAP_ 0 0 0 REV__ENSG00000171206|ENST00000643721|TRIM8 REV__ENSG00000171206|ENST00000643721|TRIM8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24151611328125 2 480.725141 959.435729 0.32016 0.00015391 -0.53286 -0.00025616 -0.2127 -0.00010225 480.72468310249064 73.589 0.4986 69.995 69.793 70.292 -3.594 20 13 2 0 0 0 0.74227 1 13984 13984 20.871 20.47 1 614980 + 5066 18210 3062 3065 5360 5360 -0.04561169052271907 CFWFFFWLLFL 11 Unmodified _CFWFFFWLLFL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3724975585938 2 784.893595 1567.77264 NaN NaN NaN NaN NaN NaN NaN 141.03 1 141.03 140.53 141.53 0 0 0 0 0.23698 1 28092 28092 3.5965 2.267 1 5067 8729 3063 3066 5361 5361 0.01146118046722222 CFWFFFWLLFL 11 Unmodified _CFWFFFWLLFL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6848754882812 3 523.598155 1567.77264 NaN NaN NaN NaN NaN NaN NaN 142.73 1 142.73 142.23 143.23 0 0 0 0 0.22632 1 28462 28462 3.0723 1.6171 1 5068 8729 3063 3066 5362 5362 0.01146118046722222 CFWFFFWLLFL 11 Unmodified _CFWFFFWLLFL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6972045898438 3 523.598155 1567.77264 NaN NaN NaN NaN NaN NaN NaN 146.15 1 141.46 140.96 141.96 -4.6868 0 0 0 0.23698 1 28983 28983 1.4551 0.24029 1 5069 8729 3063 3066 5363 5363 0.01146118046722222 CFWFFFWLLFL 11 Unmodified _CFWFFFWLLFL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6823120117188 3 523.598155 1567.77264 -0.12367 -6.4756E-05 -2.8073 -0.0014699 -2.9309 -0.0015346 523.5970912181874 143.3 0.17967 138.64 138.54 138.72 -4.656 7 4 2 0 0 0 0.88374 1 28331 28331 8.4443 8.3495 1 5961800 5070 8729 3063 3066 5364 5364 0.01146118046722222 CFWFFFWLLFL 11 Unmodified _CFWFFFWLLFL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6864624023438 3 523.598155 1567.77264 -0.1117 -5.8488E-05 2.799 0.0014656 2.6873 0.0014071 523.5992859495385 144.9 0.13977 140.23 140.16 140.3 -4.6694 5 3 2 0 0 0 0.88374 1 28705 28705 8.4443 6.9892 1 1639700 5071 8729 3063 3066 5365 5365 0.01146118046722222 CFWFFFWLLFL 11 Unmodified _CFWFFFWLLFL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.681640625 3 523.598155 1567.77264 NaN NaN NaN NaN NaN NaN NaN 147.44 1 142.28 141.78 142.78 -5.1557 0 0 0 0.22632 1 28530 28530 8.4443 6.9892 1 5072 8729 3063 3066 5366 5366 0.01146118046722222 CFWFFFWLLFL 11 Unmodified _CFWFFFWLLFL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.681640625 3 523.598155 1567.77264 NaN NaN NaN NaN NaN NaN NaN 147.45 1 142.29 141.79 142.79 -5.1557 0 0 0 0.2366 1 28532 28532 3.0723 2.5663 1 5073 8729 3063 3066 5367 5367 0.01146118046722222 CFWFFFWLLFL 11 Unmodified _CFWFFFWLLFL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7013549804688 3 523.598155 1567.77264 NaN NaN NaN NaN NaN NaN NaN 150.76 1 145.56 145.06 146.06 -5.1994 0 0 0 0.23698 1 29215 29215 1.4551 0.34536 1 5074 8729 3063 3066 5368 5368 0.01146118046722222 CFWFFFWLLFL 11 Unmodified _CFWFFFWLLFL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4029541015625 2 784.893595 1567.77264 0.46313 0.00036351 1.5314 0.001202 1.9945 0.0015655 784.8937266572633 141.73 0.13727 136.87 136.75 136.88 -4.8678 5 3 2 0 0 0 0.66087 3 27351 27342;27345;27351 3.5965 1.098 1 2295800 5075 8729 3063 3066 5369;5370;5371 5371 0.01146118046722222 CFWFFFWLLFL 11 Unmodified _CFWFFFWLLFL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.68310546875 3 523.598155 1567.77264 NaN NaN NaN NaN NaN NaN NaN 145.94 1 140.94 140.44 141.44 -5 0 0 0 0.22632 1 28233 28233 13.535 12.886 1 5076 8729 3063 3066 5372 5372 0.01146118046722222 CFWFFFWLLFL 11 Unmodified _CFWFFFWLLFL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6939086914062 3 523.598155 1567.77264 0.32092 0.00016804 -1.7186 -0.00089984 -1.3976 -0.0007318 523.5962491521914 141.02 0.37593 136.15 135.91 136.29 -4.8677 17 10 2 0 0 0 0.88374 1 27194 27194 8.4443 8.4181 1 7424700 5077 8729 3063 3066 5373 5373 0.01146118046722222 CFWILYHFINK 11 Unmodified _CFWILYHFINK_ 0 0 0 REV__ENST00000527493.5_1_11:89892410-89896902:+|nuORF REV__ENST00000527493.5_1_11:89892410-89896902:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3839721679688 2 742.381383 1482.74821 NaN NaN NaN NaN NaN NaN NaN 70.511 1 70.511 70.011 71.011 0 0 0 0 0.22632 1 13660 13660 0 0 1 + 5078 22709 3064 3067 5374 5374 0.026148578931952215 CFWKNLIY 8 Unmodified _CFWKNLIY_ 0 0 0 ENST00000393348.6_1_2:106362256-106432984:+|nuORF ENST00000393348.6_1_2:106362256-106432984:+|nuORF ENST00000393348.6_1_2:106362256-106432984:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7769775390625 2 543.775688 1085.53682 0.2582 0.0001404 2.455 0.001335 2.7132 0.0014754 543.7773433656185 140.03 0.7632 135.39 134.86 135.62 -4.6439 29 21 2 0 0 0 0.66265 1 27660 27660 18.135 2.2878 1 2265600 5079 9392 3065 3068 5375 5375 -0.0025239407789285906 CFYGKCYY 8 Unmodified _CFYGKCYY_ 0 0 0 ENSG00000116199|ENST00000263733|FAM20B;ENST00000493762.1_1_3:169650279-169650495:+|nuORF ENSG00000116199|ENST00000263733|FAM20B;ENST00000493762.1_1_3:169650279-169650495:+|nuORF ENSG00000116199|ENST00000263733|FAM20B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.691650390625 2 523.709156 1045.40376 NaN NaN NaN NaN NaN NaN NaN 82.714 1 78.841 78.341 79.341 -3.8736 0 0 0 0.23366 1 15712 15712 9.544 3.3521 1 5080 2915;10549 3066 3069 5376 5376 -0.11712581526080612 CFYHAFAGAEQ 11 Unmodified _CFYHAFAGAEQ_ 0 0 0 ENSG00000248746|ENST00000513398|ACTN3;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENSG00000077522|ENST00000366578|ACTN2;ENST00000502692.5_1_11:66313918-66328094:+|nuORF ENSG00000248746|ENST00000513398|ACTN3;ENST00000502692.5_1_11:66313918-66328094:+|nuORF ENSG00000248746|ENST00000513398|ACTN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7671508789062 2 622.263673 1242.51279 0.91103 0.0005669 0.50402 0.00031363 1.415 0.00088053 622.7672211493754 59.006 0.46417 56.095 55.784 56.248 -2.9105 24 12 3 0 0 0 0.61809 1 11295 11295 0.172 0 1 1534300 5081 7894;10631 3067 3070 5377 5377 -0.09876279302216062 CGAAPASP 8 Unmodified _CGAAPASP_ 0 0 0 ENST00000532739.1_1_16:16459039-16460653:+|nuORF ENST00000532739.1_1_16:16459039-16460653:+|nuORF ENST00000532739.1_1_16:16459039-16460653:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.48992919921875 2 337.152332 672.29011 -0.47659 -0.00016068 1.1351 0.00038268 0.65846 0.000222 337.1526243335041 37.966 0.58874 35.628 35.153 35.742 -2.3375 21 16 2 0 0 0 8448 1 6701 6701 1.3295 0 1 1320600 5082 10985 3068 3071 5378 5378 -0.059143085767800585 CGAAPASP 8 Unmodified _CGAAPASP_ 0 0 0 ENST00000532739.1_1_16:16459039-16460653:+|nuORF ENST00000532739.1_1_16:16459039-16460653:+|nuORF ENST00000532739.1_1_16:16459039-16460653:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 337.152332 672.29011 -0.37546 -0.00012659 0.95864 0.00032321 0.58317 0.00019662 337.1525542473884 35.636 0.4105 35.636 35.346 35.757 0 0.05994 4.8691E-05 NaN 1.3295 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2178300 5083 10985 3068 3071 -0.059143085767800585 CGAAPASP 8 Unmodified _CGAAPASP_ 0 0 0 ENST00000532739.1_1_16:16459039-16460653:+|nuORF ENST00000532739.1_1_16:16459039-16460653:+|nuORF ENST00000532739.1_1_16:16459039-16460653:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 337.152332 672.29011 -0.6291 -0.0002121 1.3962 0.00047073 0.76709 0.00025863 337.1526732049304 38.03 0.55629 35.561 35.223 35.779 -2.4688 -0.01518 0.00034374 NaN 1.3295 29 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2169100 5084 10985 3068 3071 -0.059143085767800585 CGAAPASP 8 Unmodified _CGAAPASP_ 0 0 0 ENST00000532739.1_1_16:16459039-16460653:+|nuORF ENST00000532739.1_1_16:16459039-16460653:+|nuORF ENST00000532739.1_1_16:16459039-16460653:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 337.152332 672.29011 0.077012 2.5965E-05 0.39537 0.0001333 0.47239 0.00015927 337.15238023093843 37.844 0.59594 35.479 35.186 35.782 -2.3647 -0.097106 -0.00033112 NaN 1.3295 31 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3052700 5085 10985 3068 3071 -0.059143085767800585 CGAERGPAL 9 Unmodified _CGAERGPAL_ 0 0 0 ENST00000369124.4_1_1:150122230-150123238:+|nuORF ENST00000369124.4_1_1:150122230-150123238:+|nuORF ENST00000369124.4_1_1:150122230-150123238:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2163391113281 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 74.552 1 70.958 70.458 71.458 -3.594 0 0 0 0.22621 1 14161 14161 15.847 1.0089 1 5086 9111 3069 3072 5379 5379 -0.023875877025943737 CGAGVAVVV 9 Unmodified _CGAGVAVVV_ 0 0 0 HK3|p.A846V|1|0.38|ENSG00000160883|chr5:176881392-176881392|G/A|missense_variant HK3|p.A846V|1|0.38|ENSG00000160883|chr5:176881392-176881392|G/A|missense_variant HK3|p.A846V|1|0.38|ENSG00000160883|chr5:176881392-176881392|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7125244140625 2 387.712556 773.41056 -0.067112 -2.602E-05 0.40807 0.00015821 0.34095 0.00013219 387.7126218295148 30.237 0.80643 30.237 29.919 30.725 0 47 22 3 0 0 0 0.5428 1 5527 5527 4.897 1.6157 1 4281500 5087 11908 3070 3073 5380 5380 0.014790994168379257 CGAKGAGR 8 Unmodified _CGAKGAGR_ 0 0 0 ENST00000460425.1_1_10:49863935-49864277:-|nuORF ENST00000460425.1_1_10:49863935-49864277:-|nuORF ENST00000460425.1_1_10:49863935-49864277:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2136535644531 2 360.184497 718.354442 NaN NaN NaN NaN NaN NaN NaN 52.518 1 52.518 52.018 53.018 0 0 0 0 0.23899 1 9984 9984 1.7423 1.1154 1 5088 10055 3071 3074 5381 5381 -0.016001086999835934 CGCCCGHH 8 Unmodified _CGCCCGHH_ 0 0 0 REV__nc|ENSG00000204930|A6H8Z2-2|FAM221B REV__nc|ENSG00000204930|A6H8Z2-2|FAM221B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 410.1104736328125 2 410.111303 818.208054 NaN NaN NaN NaN NaN NaN NaN 27.639 1 25.642 25.142 26.142 -1.9962 0 0 0 0.21486 1 4633 4633 0.79363 0.79363 1 + 5089 19571 3072 3075 5382 5382 -0.20832193523392561 CGCDFSGEAY 10 Unmodified _CGCDFSGEAY_ 0 0 0 nc|ENSG00000076604|Q9BUZ4-2|TRAF4;ENSG00000076604|ENST00000262395|TRAF4 nc|ENSG00000076604|Q9BUZ4-2|TRAF4 nc|ENSG00000076604|Q9BUZ4-2|TRAF4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 525.7660522460938 2 526.178417 1050.34228 0.3017 0.00015875 3.3727 0.0017746 3.6744 0.0019334 526.1805870576565 138.8 0.17755 133.95 133.86 134.04 -4.8492 6 4 2 0 0 0 1.1333 1 26761 26761 0.26539 0.14252 1 641320 5090 1541 3073 3076 5383 5383 -0.1808755801598636 CGCDGSNN 8 Unmodified _CGCDGSNN_ 0 0 0 nc|ENSG00000061492|Q9H1J5|WNT8A;nc|ENSG00000061492|Q9H1J5-2|WNT8A;ENSG00000061492|ENST00000506684|WNT8A nc|ENSG00000061492|Q9H1J5|WNT8A nc|ENSG00000061492|Q9H1J5|WNT8A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 385.21661376953125 2 385.11562 768.216687 NaN NaN NaN NaN NaN NaN NaN 16.686 1 15.47 14.97 15.97 -1.2159 0 0 0 0.2396 1 2638 2638 0.30703 0 1 5091 1316 3074 3077 5384 5384 -0.17669225081579043 CGCDWQFREKY 11 Unmodified _CGCDWQFREKY_ 0 0 0 nc|ENSG00000197408|P20813-2|CYP2B6 nc|ENSG00000197408|P20813-2|CYP2B6 nc|ENSG00000197408|P20813-2|CYP2B6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73358154296875 3 478.869157 1433.58564 NaN NaN NaN NaN NaN NaN NaN 21.497 1 19.776 19.276 20.276 -1.7211 0 0 0 0.23698 1 3363 3363 2.4348 1.22 1 5092 12542 3075 3078 5385 5385 -0.1138089357109493 CGCGCGCF 8 Unmodified _CGCGCGCF_ 0 0 0 REV__KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant REV__KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2137451171875 2 375.09733 748.180108 NaN NaN NaN NaN NaN NaN NaN 15.518 1 14.164 13.664 14.664 -1.3534 0 0 0 0.2396 1 2141 2141 0.30703 0.30703 1 + 5093 23742 3076 3079 5386 5386 -0.20405516503490162 CGCIEDYKL 9 Unmodified _CGCIEDYKL_ 0 0 0 ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1;ASTN1|p.L945Pfs*9|1|0.49|ENSG00000152092|chr1:176894668-176894669|-/G|frameshift_variant;nc|ENSG00000152092|O14525-3|ASTN1;ENST00000281881.7_1_1:176905297-177133812:-|nuORF ENSG00000152092|ENST00000361833|ASTN1 ENSG00000152092|ENST00000361833|ASTN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2718505859375 2 522.230453 1042.44635 NaN NaN NaN NaN NaN NaN NaN 127.71 1 127.71 127.21 128.21 0 0 0 0 0.19687 1 25212 25212 8.1555 6.4133 1 5094 4901 3077 3080 5387 5387 -0.07317231188494588 CGCNEEDSDD 10 Unmodified _CGCNEEDSDD_ 0 0 0 REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7813110351562 2 543.652961 1085.29137 NaN NaN NaN NaN NaN NaN NaN 123.75 1 119.18 118.68 119.68 -4.5757 0 0 0 0.22588 1 24396 24396 1.4819 0.79152 1 + 5095 16831 3078 3081 5388 5388 -0.24786551851502736 CGDDDSHHA 9 Unmodified _CGDDDSHHA_ 0 0 0 REV__ENST00000369146.7_1_1:149879731-149880812:-|nuORF REV__ENST00000369146.7_1_1:149879731-149880812:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7268981933594 2 478.66178 955.309008 NaN NaN NaN NaN NaN NaN NaN 75.04 1 75.04 74.54 75.54 0 0 0 0 0.19632 1 14571 14571 0.073264 0 1 + 5096 20954 3079 3082 5389 5389 -0.17043423743689345 CGESPHEF 8 Unmodified _CGESPHEF_ 0 0 0 REV__ENST00000431908.5_1_6:31504422-31508408:-|nuORF REV__ENST00000431908.5_1_6:31504422-31508408:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7591552734375 2 453.176535 904.338517 0.31785 0.00014404 0.67211 0.00030459 0.98996 0.00044863 453.176758403316 97.566 1.0347 97.566 97.191 98.226 0 46 29 2 0 0 0 0.98792 1 19157 19157 14.582 1.0738 1 1940400 + 5097 21627 3080 3083 5390 5390 -0.11747859727540799 CGESPHEF 8 Unmodified _CGESPHEF_ 0 0 0 REV__ENST00000431908.5_1_6:31504422-31508408:-|nuORF REV__ENST00000431908.5_1_6:31504422-31508408:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.176535 904.338517 -0.092353 -4.1852E-05 1.241 0.00056237 1.1486 0.00052052 453.17697094829083 101.65 1.2788 97.491 97.125 98.403 -4.1594 -0.09204 0.00031548 NaN 14.582 71 36 3 NaN NaN NaN NaN 0 NaN NaN 0 3049100 + 5098 21627 3080 3083 -0.11747859727540799 CGGKSGGCSGY 11 Unmodified _CGGKSGGCSGY_ 0 0 0 REV__ENSG00000241598|ENST00000399682|KRTAP5-4 REV__ENSG00000241598|ENST00000399682|KRTAP5-4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.264892578125 2 488.186577 974.358601 0.31852 0.0001555 -1.2975 -0.00063344 -0.97902 -0.00047794 488.18537191904187 98.358 0.91003 98.358 97.879 98.789 0 86 25 5 0 0 0 0.53992 1 19267 19267 0.58532 0 1 14906000 + 5099 19785 3081 3084 5391 5391 -0.12960432059242066 CGGLSEGFH 9 Unmodified _CGGLSEGFH_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;ENST00000587604.1_1_19:10251445-10252745:-|nuORF;ENST00000589091.1_1_19:10251445-10251985:-|nuORF;ENST00000586588.5_1_19:10244345-10254710:-|nuORF nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.74749755859375 2 453.692352 905.370152 NaN NaN NaN NaN NaN NaN NaN 43.814 1 43.814 43.314 44.314 0 0 0 0 0.22251 1 8207 8207 16.942 4.4107 1 5100 3641 3082 3085 5392 5392 -0.08631866973587421 CGGVGVAA 8 Unmodified _CGGVGVAA_ 0 0 0 COL3A1|p.A1202V|1|0.29|ENSG00000168542|chr2:189009003-189009003|C/T|missense_variant COL3A1|p.A1202V|1|0.29|ENSG00000168542|chr2:189009003-189009003|C/T|missense_variant COL3A1|p.A1202V|1|0.29|ENSG00000168542|chr2:189009003-189009003|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1057434082031 2 317.154874 632.295196 NaN NaN NaN NaN NaN NaN NaN 6.1711 1 5.5449 5.0449 6.0449 -0.62626 0 0 0 0.21486 1 427 427 0.79363 0 1 5101 627 3083 3086 5393 5393 -0.03566004714184601 CGLAPRRF 8 Unmodified _CGLAPRRF_ 0 0 0 ENST00000519007.5_1_8:91013720-91041621:+|nuORF;DECR1|p.T245Pfs*18|1|0.12|ENSG00000104325|chr8:90042791-90042791|A/-|frameshift_variant;ENSG00000104325|ENST00000220764|DECR1 ENST00000519007.5_1_8:91013720-91041621:+|nuORF ENST00000519007.5_1_8:91013720-91041621:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2480773925781 2 460.250172 918.48579 NaN NaN NaN NaN NaN NaN NaN 8.332 1 7.2973 6.7973 7.7973 -1.0347 0 0 0 0.21486 1 772 772 0.69038 0 1 5102 810 3084 3087 5394 5394 0.023287016679205408 CGNKGKVIL 9 Unmodified _CGNKGKVIL_ 0 0 0 ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2043151855469 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 126.65 1 126.65 126.15 127.15 0 0 0 0 0.23508 1 24995 24995 1.0715 0.61312 1 5103 10914 3085 3088 5395 5395 0.06402721779340936 CGNKGKVIL 9 Unmodified _CGNKGKVIL_ 0 0 0 ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.23260498046875 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 126.84 1 126.84 126.34 127.34 0 0 0 0 0.23508 1 25036 25036 1.0715 0.61312 1 5104 10914 3085 3088 5396 5396 0.06402721779340936 CGNKGKVIL 9 Unmodified _CGNKGKVIL_ 0 0 0 ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2324523925781 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 130.14 1 130.14 129.64 130.64 0 0 0 0 0.23508 1 25716 25716 1.0715 0.61312 1 5105 10914 3085 3088 5397 5397 0.06402721779340936 CGNKGKVIL 9 Unmodified _CGNKGKVIL_ 0 0 0 ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2047424316406 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 130.68 1 126.05 125.55 126.55 -4.6359 0 0 0 0.23508 1 25753 25753 1.0715 0.61312 1 5106 10914 3085 3088 5398 5398 0.06402721779340936 CGNKGKVIL 9 Unmodified _CGNKGKVIL_ 0 0 0 ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2334289550781 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 134.78 1 130.14 129.64 130.64 -4.6399 0 0 0 0.23508 1 26581 26581 1.0715 0.61312 1 5107 10914 3085 3088 5399 5399 0.06402721779340936 CGNKGKVIL 9 Unmodified _CGNKGKVIL_ 0 0 0 ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2316589355469 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 133.96 1 129.14 128.64 129.64 -4.8175 0 0 0 0.23508 1 25787 25787 1.0715 0.61312 1 5108 10914 3085 3088 5400 5400 0.06402721779340936 CGNKGKVIL 9 Unmodified _CGNKGKVIL_ 0 0 0 ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2580871582031 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 134.8 1 129.98 129.48 130.48 -4.8175 0 0 0 0.23508 1 25952 25952 1.0715 0.61312 1 5109 10914 3085 3088 5401 5401 0.06402721779340936 CGNKGKVIL 9 Unmodified _CGNKGKVIL_ 0 0 0 ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF ENST00000526421.5_1_11:102192787-102192853:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2214660644531 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 134.91 1 130.09 129.59 130.59 -4.8175 0 0 0 0.23508 1 25973 25973 1.0715 0.61312 1 5110 10914 3085 3088 5402 5402 0.06402721779340936 CGWCHGCR 8 Unmodified _CGWCHGCR_ 0 0 0 REV__KMT2B|p.R970W|1|0.13|ENSG00000272333|chr19:35723180-35723180|C/T|missense_variant REV__KMT2B|p.R970W|1|0.13|ENSG00000272333|chr19:35723180-35723180|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.1689758300781 2 461.167467 920.320381 NaN NaN NaN NaN NaN NaN NaN 4.9903 1 4.9903 4.4903 5.4903 0 0 0 0 0.21486 1 194 194 0.79363 0 1 + 5111 23729 3086 3089 5403 5403 -0.14296596454892097 CHCCHCCPCCC 11 Unmodified _CHCCHCCPCCC_ 0 0 0 REV__ENSG00000197191|ENST00000650725|CYSRT1 REV__ENSG00000197191|ENST00000650725|CYSRT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 607.5684814453125 2 607.634591 1213.25463 NaN NaN NaN NaN NaN NaN NaN 165.4 1 165.4 164.9 165.9 0 0 0 0 0.22632 1 33564 33564 0 0 1 + 5112 19313 3087 3090 5404 5404 -0.3434690434194181 CHCWCDNE 8 Unmodified _CHCWCDNE_ 0 0 0 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.05694580078125 3 337.103545 1008.28881 NaN NaN NaN NaN NaN NaN NaN 14.1 1 12.927 12.427 13.427 -1.173 0 0 0 0.21486 1 1884 1884 0.45834 0.45834 1 + 5113 24128 3088 3091 5405 5405 -0.2150063399950568 CHECGKTFY 9 Unmodified _CHECGKTFY_ 0 0 0 ENSG00000075407|ENST00000685332|ZNF37A ENSG00000075407|ENST00000685332|ZNF37A ENSG00000075407|ENST00000685332|ZNF37A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7830810546875 2 544.22042 1086.42629 0.16561 9.0127E-05 -0.57573 -0.00031332 -0.41012 -0.0002232 544.2202289001023 40.616 0.77114 38.126 37.972 38.743 -2.4896 26 21 2 0 0 0 0.60489 1 7286 7286 2.4985 1.169 1 779600 5114 1516 3089 3092 5406 5406 -0.1134698212845251 CHEVKDWFFLY 11 Unmodified _CHEVKDWFFLY_ 0 0 0 REV__BLMH|p.R110H|1|0.26|ENSG00000108578|chr17:30287940-30287940|C/T|missense_variant REV__BLMH|p.R110H|1|0.26|ENSG00000108578|chr17:30287940-30287940|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 496.2201843261719 3 496.232312 1485.67511 NaN NaN NaN NaN NaN NaN NaN 27.207 1 25.425 24.925 25.925 -1.7821 0 0 0 0.22632 1 4827 4827 5.4027 1.3519 1 + 5115 13197 3090 3093 5407 5407 -0.048303156200745434 CHGCCCNCCCC 11 Unmodified _CHGCCCNCCCC_ 0 0 0 REV__ENSG00000147570|ENST00000276570|DNAJC5B REV__ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3169555664062 2 576.110948 1150.20734 NaN NaN NaN NaN NaN NaN NaN 101.04 1 101.04 100.54 101.54 0 0 0 0 0.22632 1 19824 19824 0 0 1 + 5116 16940 3091 3094 5408 5408 -0.36175183612931505 CHGCCCNCCCC 11 Unmodified _CHGCCCNCCCC_ 0 0 0 REV__ENSG00000147570|ENST00000276570|DNAJC5B REV__ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3194580078125 2 576.110948 1150.20734 NaN NaN NaN NaN NaN NaN NaN 111.41 1 111.41 110.91 111.91 0 0 0 0 0.22632 1 21914 21914 0 0 1 + 5117 16940 3091 3094 5409 5409 -0.36175183612931505 CHGCCCNCCCC 11 Unmodified _CHGCCCNCCCC_ 0 0 0 REV__ENSG00000147570|ENST00000276570|DNAJC5B REV__ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3194580078125 2 576.110948 1150.20734 NaN NaN NaN NaN NaN NaN NaN 111.43 1 111.43 110.93 111.93 0 0 0 0 0.23698 1 21917 21917 0 0 1 + 5118 16940 3091 3094 5410 5410 -0.36175183612931505 CHGCCCNCCCC 11 Unmodified _CHGCCCNCCCC_ 0 0 0 REV__ENSG00000147570|ENST00000276570|DNAJC5B REV__ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3389892578125 2 576.110948 1150.20734 NaN NaN NaN NaN NaN NaN NaN 167.09 1 167.09 166.59 167.59 0 0 0 0 0.23698 1 34123 34123 0 0 1 + 5119 16940 3091 3094 5411 5411 -0.36175183612931505 CHGCCCNCCCC 11 Unmodified _CHGCCCNCCCC_ 0 0 0 REV__ENSG00000147570|ENST00000276570|DNAJC5B REV__ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3189086914062 2 576.110948 1150.20734 NaN NaN NaN NaN NaN NaN NaN 112.83 1 108.38 107.88 108.88 -4.4539 0 0 0 0.22632 1 22235 22235 0 0 1 + 5120 16940 3091 3094 5412 5412 -0.36175183612931505 CHGCCCNCCCC 11 Unmodified _CHGCCCNCCCC_ 0 0 0 REV__ENSG00000147570|ENST00000276570|DNAJC5B REV__ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3189086914062 2 576.110948 1150.20734 NaN NaN NaN NaN NaN NaN NaN 112.84 1 108.39 107.89 108.89 -4.4539 0 0 0 0.23698 1 22236 22236 0 0 1 + 5121 16940 3091 3094 5413 5413 -0.36175183612931505 CHGCCCNCCCC 11 Unmodified _CHGCCCNCCCC_ 0 0 0 REV__ENSG00000147570|ENST00000276570|DNAJC5B REV__ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.318359375 2 576.110948 1150.20734 NaN NaN NaN NaN NaN NaN NaN 93.92 1 89.777 89.277 90.277 -4.1435 0 0 0 0.22632 1 17909 17909 0 0 1 + 5122 16940 3091 3094 5414 5414 -0.36175183612931505 CHNRILKYIAY 11 Unmodified _CHNRILKYIAY_ 0 0 0 REV__ENSG00000174358|ENST00000304460|SLC6A19 REV__ENSG00000174358|ENST00000304460|SLC6A19 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2526550292969 3 465.251818 1392.73363 NaN NaN NaN NaN NaN NaN NaN 40.99 1 38.5 38 39 -2.4896 0 0 0 0.22632 1 7349 7349 3.0723 0 1 + 5123 18409 3092 3095 5415 5415 0.05296785745076704 CHPGCFHHLHG 11 Unmodified _CHPGCFHHLHG_ 0 0 0 ENST00000482536.5_1_6:26384030-26390413:+|nuORF ENST00000482536.5_1_6:26384030-26390413:+|nuORF ENST00000482536.5_1_6:26384030-26390413:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7636108398438 2 622.763652 1243.51275 NaN NaN NaN NaN NaN NaN NaN 8.2026 1 7.5235 7.0235 8.0235 -0.67913 0 0 0 0.22632 1 828 828 0 0 1 5124 10398 3093 3096 5416 5416 -0.09926557783228418 CHPVTTDT 8 Unmodified _CHPVTTDT_ 0 0 0 REV__ENST00000422735.1_1_9:88989919-88990300:-|nuORF REV__ENST00000422735.1_1_9:88989919-88990300:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2286071777344 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 69.477 1 65.94 65.44 66.44 -3.5362 0 0 0 0.23749 1 13080 13080 0.12286 0 1 + 5125 21525 3094 3097 5417 5417 -0.07147286693464139 CHRFQWYFLHK 11 Unmodified _CHRFQWYFLHK_ 0 0 0 REV__GRIN2B|p.E839K|1|0.35|ENSG00000273079|chr12:13567108-13567108|C/T|missense_variant REV__GRIN2B|p.E839K|1|0.35|ENSG00000273079|chr12:13567108-13567108|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2711181640625 3 522.259196 1563.75576 NaN NaN NaN NaN NaN NaN NaN 155.05 1 149.76 149.26 150.26 -5.2854 0 0 0 0.22632 1 30071 30071 0.50596 0 1 + 5126 23593 3095 3098 5418 5418 -0.0035698978651907964 CHSVLMNGKY 10 Unmodified _CHSVLMNGKY_ 0 0 0 nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF nc|ENSG00000157077|O95405-3|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3177490234375 2 576.270444 1150.52633 0.27247 0.00015702 -1.0147 -0.00058474 -0.74223 -0.00042772 576.2697251211978 20.258 0.37969 18.862 18.619 18.998 -1.3966 17 8 3 0 0 0 0.42569 1 3373 3373 29.082 2.1979 1 1962100 5127 9029 3096 3099 5419 5419 -0.0429074479461633 CHSVLMNGKY 10 Unmodified _CHSVLMNGKY_ 0 0 0 nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF nc|ENSG00000157077|O95405-3|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3202514648438 2 576.270444 1150.52633 0.17043 9.8213E-05 -0.63368 -0.00036517 -0.46325 -0.00026696 576.2701465648454 19.625 0.31046 18.229 18.102 18.412 -1.3966 20 8 3 0 0 0 0.86078 1 3232 3232 17.113 2.2746 1 2459800 5128 9029 3096 3099 5420 5420 -0.0429074479461633 CHSVLMNGKY 10 Unmodified _CHSVLMNGKY_ 0 0 0 nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF nc|ENSG00000157077|O95405-3|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.270444 1150.52633 0.24736 0.00014254 -1.4111 -0.00081316 -1.1637 -0.00067062 576.2696046725162 18.751 0.44959 18.751 18.511 18.961 0 -0.044901 -0.00048435 NaN 29.082 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1837200 5129 9029 3096 3099 -0.0429074479461633 CHSVLMNGKY 10 Unmodified _CHSVLMNGKY_ 0 0 0 nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF nc|ENSG00000157077|O95405-3|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.270444 1150.52633 -0.19724 -0.00011366 -0.10916 -6.2907E-05 -0.3064 -0.00017657 576.2702986751328 19.523 0.34406 18.198 18.037 18.381 -1.3251 -0.0048837 0.00035944 NaN 17.113 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1971600 5130 9029 3096 3099 -0.0429074479461633 CHSVLMNGKY 10 Unmodified _CHSVLMNGKY_ 0 0 0 nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF nc|ENSG00000157077|O95405-3|ZFYVE9 nc|ENSG00000157077|O95405-3|ZFYVE9 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.270444 1150.52633 -0.86041 -0.00049583 -0.1982 -0.00011422 -1.0586 -0.00061005 576.2702108513716 20.411 0.42356 18.776 18.535 18.959 -1.6351 -0.020685 0.00091353 NaN 29.082 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1020100 5131 9029 3096 3099 -0.0429074479461633 CHVMTNLGEKL 11 Unmodified _CHVMTNLGEKL_ 0 0 0 CALM2|p.R107C|1|0.06|ENSG00000143933|chr2:47161825-47161825|G/A|missense_variant CALM2|p.R107C|1|0.06|ENSG00000143933|chr2:47161825-47161825|G/A|missense_variant CALM2|p.R107C|1|0.06|ENSG00000143933|chr2:47161825-47161825|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7731323242188 2 622.809933 1243.60531 NaN NaN NaN NaN NaN NaN NaN 156.97 1 151.7 151.2 152.2 -5.2712 0 0 0 0.22765 1 30450 30450 10.151 2.5416 1 5132 368 3097 3100 5421 5421 -0.0067451756035552535 CICCCCCY 8 Unmodified _CICCCCCY_ 0 0 0 ENST00000242728.4_1_12:26273527-26273698:-|nuORF ENST00000242728.4_1_12:26273527-26273698:-|nuORF ENST00000242728.4_1_12:26273527-26273698:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 456.7135925292969 2 457.113809 912.213064 NaN NaN NaN NaN NaN NaN NaN 67.029 1 63.533 63.033 64.033 -3.4965 0 0 0 0.2396 1 12572 12572 0.12286 0 1 5133 8191 3098 3101 5422 5422 -0.246553937673184 CIDCAGVLY 9 Unmodified _CIDCAGVLY_ 0 0 0 REV__ENST00000494347.5_1_10:103546197-103546269:-|nuORF REV__ENST00000494347.5_1_10:103546197-103546269:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73455810546875 2 478.714439 955.414325 NaN NaN NaN NaN NaN NaN NaN 64.654 1 64.654 64.154 65.154 0 0 0 0 0.21848 1 12449 12449 18.135 1.1927 1 + 5134 22363 3099 3102 5423 5423 -0.06516598871621682 CIDCAGVLY 9 Unmodified _CIDCAGVLY_ 0 0 0 REV__ENST00000494347.5_1_10:103546197-103546269:-|nuORF REV__ENST00000494347.5_1_10:103546197-103546269:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7335205078125 2 478.714439 955.414325 NaN NaN NaN NaN NaN NaN NaN 68.031 1 64.495 63.995 64.995 -3.5362 0 0 0 0.21848 1 12773 12773 18.135 1.1927 1 + 5135 22363 3099 3102 5424 5424 -0.06516598871621682 CIESNMLTDMT 11 Unmodified _CIESNMLTDMT_ 0 0 0 nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A nc|ENSG00000181222|P24928|POLR2A nc|ENSG00000181222|P24928|POLR2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7664794921875 2 629.261624 1256.5087 0.42719 0.00026882 -0.62078 -0.00039063 -0.19359 -0.00012182 629.2609483440204 61.46 1.3521 58.22 57.65 59.002 -3.2395 105 38 4 0 0 0 0.53992 1 11480 11480 0.58532 0.58532 1 15816000 5136 6715 3100 3103 5425 5425 -0.10929872902488569 CIFPLYLWSWR 11 Unmodified _CIFPLYLWSWR_ 0 0 0 ENST00000419234.8_1_12:112081682-112081754:-|nuORF ENST00000419234.8_1_12:112081682-112081754:-|nuORF ENST00000419234.8_1_12:112081682-112081754:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3812255859375 2 742.381383 1482.74821 NaN NaN NaN NaN NaN NaN NaN 153.32 1 153.32 152.82 153.82 0 0 0 0 0.22632 1 30717 30717 0.00056442 0 1 5137 9650 3101 3104 5426 5426 0.026148578931724842 CIFPSRSF 8 Unmodified _CIFPSRSF_ 0 0 0 REV__DSN1|p.G63Efs*39|1|0.25|ENSG00000149636|chr20:36771045-36771045|T/-|frameshift_variant REV__DSN1|p.G63Efs*39|1|0.25|ENSG00000149636|chr20:36771045-36771045|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7366943359375 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 77.911 1 74.448 73.948 74.948 -3.4633 0 0 0 0.22647 1 15213 15213 2.643 1.188 1 + 5138 13755 3102 3105 5427 5427 -0.020938266631105762 CIGEFYWVY 9 Unmodified _CIGEFYWVY_ 0 0 0 REV__ENSG00000163762|ENST00000296059|TM4SF18 REV__ENSG00000163762|ENST00000296059|TM4SF18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2718505859375 2 590.26261 1178.51067 NaN NaN NaN NaN NaN NaN NaN 143.89 1 138.95 138.45 139.45 -4.9445 0 0 0 0.23508 1 27776 27776 9.3474 0.75416 1 + 5139 17611 3103 3106 5428 5428 -0.07144708040027581 CIKKKKTK 8 Unmodified _CIKKKKTK_ 0 0 0 REV__ENST00000515800.6_1_5:86667940-86686697:+|nuORF REV__ENST00000515800.6_1_5:86667940-86686697:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 326.1964111328125 3 326.216045 975.626307 NaN NaN NaN NaN NaN NaN NaN 137.61 1 132.77 132.27 133.27 -4.84 0 0 0 0.21486 1 26514 26514 0.35063 0.35063 1 + 5140 22594 3104 3107 5429 5429 0.13751860601485077 CIKWRRRRRRR 11 Unmodified _CIKWRRRRRRR_ 0 0 0 ENST00000303961.8_1_19:41306371-41306464:+|nuORF ENST00000303961.8_1_19:41306371-41306464:+|nuORF ENST00000303961.8_1_19:41306371-41306464:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7913208007812 3 548.002565 1640.98587 NaN NaN NaN NaN NaN NaN NaN 120.59 1 115.95 115.45 116.45 -4.645 0 0 0 0.23698 1 23148 23148 0.08335 0.08335 1 5141 8589 3105 3108 5430 5430 0.19101281389612268 CINSARRAA 9 Unmodified _CINSARRAA_ 0 0 0 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7884826660156 2 481.253443 960.492332 -0.065773 -3.1654E-05 -0.2727 -0.00013124 -0.33848 -0.00016289 481.2533288834899 70.197 0.63531 66.948 66.615 67.25 -3.2492 32 17 2 0 0 0 0.54076 1 13710 13710 17.113 1.2657 1 4295500 + 5142 14735 3106 3109 5431 5431 0.010505948286208877 CIPLVPRH 8 Unmodified _CIPLVPRH_ 0 0 0 REV__ENST00000586204.1_1_18:11908178-11908274:-|nuORF REV__ENST00000586204.1_1_18:11908178-11908274:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.1434326171875 3 312.181224 933.521842 NaN NaN NaN NaN NaN NaN NaN 68.302 1 68.302 67.802 68.802 0 0 0 0 0.21486 1 13205 13205 0.40072 0.050084 1 + 5143 20475 3107 3110 5432 5432 0.052421588447714385 CIPYHWWYRWW 11 Unmodified _CIPYHWWYRWW_ 0 0 0 REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 565.8912353515625 3 565.927446 1694.76051 NaN NaN NaN NaN NaN NaN NaN 9.1148 1 8.0503 7.5503 8.5503 -1.0645 0 0 0 0.23698 1 954 954 0 0 1 + 5144 21423 3108 3111 5433 5433 -0.059081056437889856 CISIIIEQY 9 Unmodified _CISIIIEQY_ 0 0 0 nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF nc|ENSG00000146414|Q149N8-4|SHPRH nc|ENSG00000146414|Q149N8-4|SHPRH MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2830810546875 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 74.14 1 70.775 70.275 71.275 -3.3643 0 0 0 0.21065 1 14462 14462 20.454 3.5113 1 5145 4653 3109 3112 5434 5434 0.015478476484986459 CISIIIEQY 9 Unmodified _CISIIIEQY_ 0 0 0 nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF nc|ENSG00000146414|Q149N8-4|SHPRH nc|ENSG00000146414|Q149N8-4|SHPRH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2830810546875 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 74.581 1 70.904 70.404 71.404 -3.6764 0 0 0 0.21065 1 14099 14099 20.454 3.5113 1 5146 4653 3109 3112 5435 5435 0.015478476484986459 CISIIIEQY 9 Unmodified _CISIIIEQY_ 0 0 0 nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF nc|ENSG00000146414|Q149N8-4|SHPRH nc|ENSG00000146414|Q149N8-4|SHPRH MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2835083007812 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 74.104 1 70.51 70.01 71.01 -3.594 0 0 0 0.21065 1 14068 14068 20.454 3.5113 1 5147 4653 3109 3112 5436 5436 0.015478476484986459 CKARLADP 8 Unmodified _CKARLADP_ 0 0 0 ENSG00000112902|ENST00000382496|SEMA5A ENSG00000112902|ENST00000382496|SEMA5A ENSG00000112902|ENST00000382496|SEMA5A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2355651855469 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 74.627 1 71.033 70.533 71.533 -3.594 0 0 0 0.21039 1 14176 14176 16.942 4.4107 1 5148 2716 3110 3113 5437 5437 0.012492891940951267 CKAWKCKL 8 Unmodified _CKAWKCKL_ 0 0 0 REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|13|1|sense REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|13|1|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2649230957031 2 490.264433 978.514313 NaN NaN NaN NaN NaN NaN NaN 78.543 1 78.543 78.043 79.043 0 0 0 0 0.20896 1 15286 15286 18.135 4.2289 1 + 5149 23771 3111 3114 5438 5438 0.024196832528218692 CKDCGQMFS 9 Unmodified _CKDCGQMFS_ 0 0 0 ENSG00000142611|ENST00000270722|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;nc|ENSG00000142611|Q9HAZ2-4|PRDM16;PRDM16|p.G513Afs*27|1|0.24|ENSG00000142611|chr1:3411729-3411729|C/-|frameshift_variant;PRDM16|p.N553Efs*51|1|0.46|ENSG00000142611|chr1:3411849-3411850|-/G|frameshift_variant;nc|ENSG00000142611|Q9HAZ2-2|PRDM16;nc|ENSG00000085276|Q03112-6|MECOM;ENSG00000085276|ENST00000651503|MECOM;nc|ENSG00000085276|Q03112|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-8|MECOM;MECOM|p.G614Efs*30|5|0.4|ENSG00000085276|chr3:169115469-169115469|T/-|frameshift_variant;MECOM|p.G611Efs*33|1|0.39|ENSG00000085276|chr3:169115476-169115476|C/-|frameshift_variant;MECOM|p.P513Qfs*15|2|0.39|ENSG00000085276|chr3:169115772-169115772|A/-|frameshift_variant;MECOM|p.V498Sfs*27|1|0.34|ENSG00000085276|chr3:169115816-169115817|-/T|frameshift_variant;MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant;nc|ENSG00000085276|Q03112-5|MECOM ENSG00000142611|ENST00000270722|PRDM16 ENSG00000142611|ENST00000270722|PRDM16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.47430419921875 3 340.131212 1017.37181 -0.26676 -9.0733E-05 1.8333 0.00062356 1.5665 0.00053282 340.4664651968987 51.494 2.123 51.494 50.987 53.11 0 209 59 6 0 0 0 0.5428 1 9731 9731 4.897 4.7692 1 62285000 5150 4431 3112 3115 5439 5439 -0.1361831727150502 CKFKQNRY 8 Unmodified _CKFKQNRY_ 0 0 0 REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6 REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7806396484375 2 543.779293 1085.54403 NaN NaN NaN NaN NaN NaN NaN 50.636 1 47.591 47.091 48.091 -3.0453 0 0 0 0.23749 1 9281 9281 0.62683 0 1 + 5151 14258 3113 3116 5440 5440 0.004683385225234815 CKKCKEKIV 9 Unmodified _CKKCKEKIV_ 0 0 0 LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant;nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3;LIG3|p.I157Nfs*16|1|0.33|ENSG00000005156|chr17:34983466-34983467|-/A|frameshift_variant;LIG3|p.I157Sfs*21|3|0.25|ENSG00000005156|chr17:34983467-34983467|A/-|frameshift_variant;ENST00000590181.5_1_17:33310024-33316690:+|nuORF LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2138671875 3 360.208562 1077.60386 NaN NaN NaN NaN NaN NaN NaN 72.593 1 68.965 68.465 69.465 -3.6275 0 0 0 0.1963 1 13710 13710 0.12781 0.10161 1 5152 985 3114 3117 5441 5441 0.06815893141538254 CKKKELHSN 9 Unmodified _CKKKELHSN_ 0 0 0 REV__SLC38A1|p.K136Sfs*14|1|0.29|ENSG00000111371|chr12:46207603-46207603|T/-|frameshift_variant REV__SLC38A1|p.K136Sfs*14|1|0.29|ENSG00000111371|chr12:46207603-46207603|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7902221679688 2 543.789858 1085.56516 NaN NaN NaN NaN NaN NaN NaN 138.68 1 133.83 133.33 134.33 -4.8492 0 0 0 0.21844 1 26727 26727 18.146 1.9972 1 + 5153 15241 3115 3118 5442 5442 0.025803038314052174 CKKKKKKKKG 10 Unmodified _CKKKKKKKKG_ 0 0 0 ENST00000393214.2_1_X:73596333-73596534:-|nuORF ENST00000393214.2_1_X:73596333-73596534:-|nuORF ENST00000393214.2_1_X:73596333-73596534:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2823486328125 2 602.407735 1202.80092 NaN NaN NaN NaN NaN NaN NaN 150.3 1 150.3 149.8 150.8 0 0 0 0 2.8426 1 30093 30093 0.0013812 0 1 5154 9388 3116 3119 5443 5443 0.20762860746663137 CKLTSGKH 8 Unmodified _CKLTSGKH_ 0 0 0 ENSG00000165799|ENST00000298690|RNASE7 ENSG00000165799|ENST00000298690|RNASE7 ENSG00000165799|ENST00000298690|RNASE7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2348327636719 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 67.631 1 64.135 63.635 64.635 -3.4965 0 0 0 0.21486 1 12693 12693 7.9102 0 1 5155 5662 3117 3120 5444 5444 0.012492891941178641 CKPLHPGASR 10 Unmodified _CKPLHPGASR_ 0 0 0 ENST00000379442.7_1_7:100662045-100662195:+|nuORF ENST00000379442.7_1_7:100662045-100662195:+|nuORF ENST00000379442.7_1_7:100662045-100662195:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.284912109375 2 533.284743 1064.55493 NaN NaN NaN NaN NaN NaN NaN 14.186 1 14.186 13.686 14.686 0 0 0 0 0.22588 1 2097 2097 5.7319 2.1354 1 5156 9296 3118 3121 5445 5445 0.02523740896799609 CKRPSGGG 8 Unmodified _CKRPSGGG_ 0 0 0 nc|ENSG00000006695|Q12887-2|COX10;ENSG00000006695|ENST00000261643|COX10 nc|ENSG00000006695|Q12887-2|COX10 nc|ENSG00000006695|Q12887-2|COX10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.20941162109375 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 98.321 1 94.364 93.864 94.864 -3.9564 0 0 0 0.2396 1 18871 18871 0.12286 0.058877 1 5157 1011 3119 3122 5446 5446 -0.024761260455420597 CKTEYFYQ 8 Unmodified _CKTEYFYQ_ 0 0 0 REV__ENSG00000176697|ENST00000356660|BDNF REV__ENSG00000176697|ENST00000356660|BDNF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.1860046386719 3 361.160154 1080.45863 NaN NaN NaN NaN NaN NaN NaN 35.817 1 35.817 35.317 36.317 0 0 0 0 0.21486 1 6587 6587 1.4819 0.41044 1 + 5158 18518 3120 3123 5447 5447 -0.07837871453784828 CKTHPHFVI 9 Unmodified _CKTHPHFVI_ 0 0 0 nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-2|APP;ENST00000474136.5_1_21:27382178-27543016:-|nuORF nc|ENSG00000142192|P05067-10|APP nc|ENSG00000142192|P05067-10|APP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.1930847167969 3 361.1919 1080.55387 NaN NaN NaN NaN NaN NaN NaN 17.71 1 16.196 15.696 16.696 -1.5148 0 0 0 0.1963 1 2587 2587 0.0033805 0 1 5159 4409 3121 3124 5448 5448 0.016815265279319647 CKVFVQRW 8 Unmodified _CKVFVQRW_ 0 0 0 REV__LLGL2|p.R619W|1|0.48|ENSG00000073350|chr17:75570236-75570236|C/T|missense_variant REV__LLGL2|p.R619W|1|0.48|ENSG00000073350|chr17:75570236-75570236|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2853393554688 2 533.286754 1064.55896 NaN NaN NaN NaN NaN NaN NaN 73.784 1 70.42 69.92 70.92 -3.3643 0 0 0 0.21486 1 14386 14386 9.3474 0.75416 1 + 5160 23799 3122 3125 5449 5449 0.029258303905407956 CKYKFYFRFF 10 Unmodified _CKYKFYFRFF_ 0 0 0 REV__tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1 REV__tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 725.0054931640625 2 724.862826 1447.7111 NaN NaN NaN NaN NaN NaN NaN 178.12 1 178.12 177.62 178.62 0 0 0 0 2.8426 1 36905 36905 0.69767 0.67146 1 + 5161 25166 3123 3126 5450 5450 0.005151863474111451 CKYNLTAGPD 10 Unmodified _CKYNLTAGPD_ 0 0 0 REV__ENST00000302550.15_1_1:244868978-244869173:+|nuORF REV__ENST00000302550.15_1_1:244868978-244869173:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2781372070312 2 541.252774 1080.491 0.34629 0.00018743 -0.24248 -0.00013124 0.10382 5.6192E-05 541.2525224700934 52.802 0.82236 52.802 52.322 53.144 0 29 22 2 0 0 0 0.23765 1 9966 9966 41.84 14.211 1 3467200 + 5162 20415 3124 3127 5451 5451 -0.04603084050813777 CKYNLTAGPD 10 Unmodified _CKYNLTAGPD_ 0 0 0 REV__ENST00000302550.15_1_1:244868978-244869173:+|nuORF REV__ENST00000302550.15_1_1:244868978-244869173:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2711181640625 2 541.252774 1080.491 0.091413 4.9478E-05 0.67321 0.00036438 0.76463 0.00041386 541.2529074715576 56.098 0.74661 52.922 52.552 53.298 -3.1761 24 20 2 0 0 0 0.52179 1 10395 10395 32.786 8.7651 1 2357600 + 5163 20415 3124 3127 5452 5452 -0.04603084050813777 CKYNLTAGPD 10 Unmodified _CKYNLTAGPD_ 0 0 0 REV__ENST00000302550.15_1_1:244868978-244869173:+|nuORF REV__ENST00000302550.15_1_1:244868978-244869173:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.252774 1080.491 0.34629 0.00018743 -0.24248 -0.00013124 0.10382 5.6192E-05 541.2525224700934 52.802 0.82236 52.802 52.322 53.144 0 -0.059771 -0.00043907 NaN 41.84 29 22 2 NaN NaN NaN NaN 0 NaN NaN 0 3467200 + 5164 20415 3124 3127 -0.04603084050813777 CLAALGTFIA 10 Unmodified _CLAALGTFIA_ 0 0 0 REV__NTM|p.G161Nfs*30|1|0.09|ENSG00000182667|chr11:132212100-132212101|-/AAACTGTTCTCTTACCTTTGGGAGAGATG|frameshift_variant REV__NTM|p.G161Nfs*30|1|0.09|ENSG00000182667|chr11:132212100-132212101|-/AAACTGTTCTCTTACCTTTGGGAGAGATG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2671813964844 2 490.267696 978.520839 NaN NaN NaN NaN NaN NaN NaN 174.33 1 169.44 168.94 169.94 -4.8845 0 0 0 0.22588 1 34631 34631 7.9102 0 1 + 5165 18794 3125 3128 5453 5453 0.03071899685187418 CLCCCCYCCT 10 Unmodified _CLCCCCYCCT_ 0 0 0 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.0804138183594 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 54.396 1 51.26 50.76 51.76 -3.1352 0 0 0 0.22588 1 10033 10033 0.13989 0.13989 1 + 5166 14763 3126 3129 5454 5454 -0.2835571427310697 CLCCCCYCCT 10 Unmodified _CLCCCCYCCT_ 0 0 0 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.1044616699219 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 54.533 1 51.397 50.897 51.897 -3.1352 0 0 0 0.22588 1 10063 10063 0.12286 0.12286 1 + 5167 14763 3126 3129 5455 5455 -0.2835571427310697 CLCCCCYCCT 10 Unmodified _CLCCCCYCCT_ 0 0 0 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.1273193359375 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 54.599 1 51.464 50.964 51.964 -3.1352 0 0 0 0.22588 1 10078 10078 0.13989 0.13989 1 + 5168 14763 3126 3129 5456 5456 -0.2835571427310697 CLDMYLYENP 10 Unmodified _CLDMYLYENP_ 0 0 0 REV__ENST00000351004.7_1_7:79846812-79846956:+|nuORF REV__ENST00000351004.7_1_7:79846812-79846956:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7660522460938 2 630.7674 1259.52025 NaN NaN NaN NaN NaN NaN NaN 81.396 1 81.396 80.896 81.896 0 0 0 0 2.8426 1 15852 15852 0.26539 0.25212 1 + 5169 20768 3127 3130 5457 5457 -0.09913307816805172 CLELFIDLL 9 Unmodified _CLELFIDLL_ 0 0 0 ENST00000216038.5_1_22:32802675-32804190:-|nuORF ENST00000216038.5_1_22:32802675-32804190:-|nuORF ENST00000216038.5_1_22:32802675-32804190:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20147705078125 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 96.842 1 92.607 92.107 93.107 -4.2348 0 0 0 0.23508 1 18493 18493 2.7352 0.23671 1 5170 8104 3128 3131 5458 5458 0.04233322170921383 CLELQMIREFP 11 Unmodified _CLELQMIREFP_ 0 0 0 REV__ENSG00000112379|ENST00000251691|ARFGEF3 REV__ENSG00000112379|ENST00000251691|ARFGEF3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2345886230469 3 460.233436 1377.67848 NaN NaN NaN NaN NaN NaN NaN 55.86 1 52.684 52.184 53.184 -3.1761 0 0 0 0.22632 1 10380 10380 0.172 0 1 + 5171 15298 3129 3132 5459 5459 0.004746111622580429 CLGGSPEG 8 Unmodified _CLGGSPEG_ 0 0 0 REV__ENST00000561824.5_1_16:30212049-30214087:+|nuORF REV__ENST00000561824.5_1_16:30212049-30214087:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.1646423339844 2 360.155071 718.29559 NaN NaN NaN NaN NaN NaN NaN 133.49 1 133.49 132.99 133.99 0 0 0 0 0.23664 1 26411 26411 3.2813 3.273 1 + 5172 23060 3130 3133 5460 5460 -0.07482629784965411 CLHKEYYETKK 11 Unmodified _CLHKEYYETKK_ 0 0 0 ENST00000515578.5_1_4:420284-429666:-|nuORF;ENST00000519732.5_1_17:67144970-67171813:-|nuORF;ENST00000522406.5_1_17:67144970-67178294:-|nuORF;ENSG00000154263|ENST00000690296|ABCA10;nc|ENSG00000154263|Q8WWZ4-2|ABCA10 ENST00000515578.5_1_4:420284-429666:-|nuORF;ENSG00000154263|ENST00000690296|ABCA10 ENST00000515578.5_1_4:420284-429666:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2425537109375 3 481.242988 1440.70714 NaN NaN NaN NaN NaN NaN NaN 21.271 1 19.797 19.297 20.297 -1.4742 0 0 0 0.22632 1 3591 3591 0.50596 0 1 5173 10789;5004 3131 3134 5461 5461 0.004410520630472092 CLHLCIPSA 9 Unmodified _CLHLCIPSA_ 0 0 0 ENST00000590413.5_1_1:110925619-110954860:+|nuORF;ENST00000457535.5_1_1:110950486-110954860:+|nuORF ENST00000590413.5_1_1:110925619-110954860:+|nuORF ENST00000590413.5_1_1:110925619-110954860:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7378234863281 2 478.738248 955.461943 0.17831 8.5362E-05 -1.6684 -0.00079873 -1.4901 -0.00071337 478.737667855193 32.366 0.42997 30.135 29.936 30.366 -2.2305 19 11 2 0 0 0 0.44856 1 5926 5926 1.6919 1.0651 1 1022500 5174 10040 3132 3135 5462 5462 -0.01756899880774654 CLHLCIPSA 9 Unmodified _CLHLCIPSA_ 0 0 0 ENST00000590413.5_1_1:110925619-110954860:+|nuORF;ENST00000457535.5_1_1:110950486-110954860:+|nuORF ENST00000590413.5_1_1:110925619-110954860:+|nuORF ENST00000590413.5_1_1:110925619-110954860:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7377624511719 2 478.738248 955.461943 0.26109 0.000125 -1.3511 -0.00064682 -1.09 -0.00052182 478.737750013159 32.249 0.38449 30.223 30.042 30.427 -2.0264 17 10 2 0 0 0 0.46598 1 5615 5615 1.6919 0.47705 1 1343400 5175 10040 3132 3135 5463 5463 -0.01756899880774654 CLHRRKLLIQ 10 Unmodified _CLHRRKLLIQ_ 0 0 0 REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|77|3|sense REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|77|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.13970947265625 3 427.26417 1278.77068 0.013668 5.8397E-06 0.38053 0.00016259 0.3942 0.00016843 427.2642544886322 123.63 1.2899 119.04 118.52 119.81 -4.5926 61 36 2 0 0 0 0.76775 1 23871 23871 0.15932 0 1 1777100 + 5176 23765 3133 3136 5464 5464 0.14244502081487553 CLHRRKLLIQ 10 Unmodified _CLHRRKLLIQ_ 0 0 0 REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|77|3|sense REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|77|3|sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 427.26417 1278.77068 0.031158 1.3313E-05 0.46173 0.00019728 0.49288 0.00021059 427.26426504620053 123.71 2.324 119.14 118.17 120.49 -4.5757 0.063312 0.00014624 NaN 0.15932 144 65 3 NaN NaN NaN NaN 0 NaN NaN 0 5426300 + 5177 23765 3133 3136 0.14244502081487553 CLHRRKLLIQ 10 Unmodified _CLHRRKLLIQ_ 0 0 0 REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|77|3|sense REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|77|3|sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 427.26417 1278.77068 0.40139 0.0001715 0.14425 6.1634E-05 0.54564 0.00023313 427.2641342122066 123.78 1.5586 119.05 118.25 119.81 -4.731 -0.024268 -0.0002607 NaN 0.15932 103 43 3 NaN NaN NaN NaN 0 NaN NaN 0 3983300 + 5178 23765 3133 3136 0.14244502081487553 CLHRRKLLIQ 10 Unmodified _CLHRRKLLIQ_ 0 0 0 REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|77|3|sense REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|77|3|sense MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 427.26417 1278.77068 0.013668 5.8397E-06 0.38053 0.00016259 0.3942 0.00016843 427.2642544886322 123.63 1.2899 119.04 118.52 119.81 -4.5926 -0.039044 4.2157E-05 NaN 0.15932 61 36 2 NaN NaN NaN NaN 0 NaN NaN 0 1777100 + 5179 23765 3133 3136 0.14244502081487553 CLKGISRGA 9 Unmodified _CLKGISRGA_ 0 0 0 ENST00000439875.1_1_9:115871990-115872302:-|nuORF ENST00000439875.1_1_9:115871990-115872302:-|nuORF ENST00000439875.1_1_9:115871990-115872302:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.768310546875 2 452.755287 903.496021 0.93526 0.00042345 1.064 0.00048172 1.9992 0.00090516 452.7557247529237 24.787 0.44564 23.139 22.926 23.371 -1.6482 25 12 3 0 0 0 0.61228 1 4317 4317 12.241 1.4167 1 1624600 5180 9877 3134 3137 5465 5465 0.04041264602494721 CLKGISRGA 9 Unmodified _CLKGISRGA_ 0 0 0 ENST00000439875.1_1_9:115871990-115872302:-|nuORF ENST00000439875.1_1_9:115871990-115872302:-|nuORF ENST00000439875.1_1_9:115871990-115872302:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 452.755287 903.496021 0.26626 0.00012055 1.9686 0.00089131 2.2349 0.0010119 452.75609860449566 23.181 0.48578 23.181 22.96 23.446 0 0.031258 0.00022485 NaN 12.241 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2163100 5181 9877 3134 3137 0.04041264602494721 CLKGISRGA 9 Unmodified _CLKGISRGA_ 0 0 0 ENST00000439875.1_1_9:115871990-115872302:-|nuORF ENST00000439875.1_1_9:115871990-115872302:-|nuORF ENST00000439875.1_1_9:115871990-115872302:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 452.755287 903.496021 -0.020591 -9.3227E-06 2.1292 0.00096401 2.1086 0.00095469 452.756171740987 24.663 0.3793 23.129 22.919 23.299 -1.5342 -0.020385 0.00037025 NaN 12.241 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1440600 5182 9877 3134 3137 0.04041264602494721 CLKQRARR 8 Unmodified _CLKQRARR_ 0 0 0 REV__LCE6A|p.R62C|1|0.41|ENSG00000235942|chr1:152843704-152843704|C/T|missense_variant REV__LCE6A|p.R62C|1|0.41|ENSG00000235942|chr1:152843704-152843704|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.4844055175781 3 344.206543 1029.5978 NaN NaN NaN NaN NaN NaN NaN 127.28 1 127.28 126.78 127.78 0 0 0 0 0.21486 1 25122 25122 0.40072 0 1 + 5183 23791 3135 3138 5466 5466 0.08418555744901823 CLLPPPLQY 9 Unmodified _CLLPPPLQY_ 0 0 0 nc|ENSG00000106113|Q13324-2|CRHR2 nc|ENSG00000106113|Q13324-2|CRHR2 nc|ENSG00000106113|Q13324-2|CRHR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2817993164062 2 522.283346 1042.55214 NaN NaN NaN NaN NaN NaN NaN 124.16 1 124.16 123.66 124.66 0 0 0 0 0.23508 1 24478 24478 7.9102 0.62092 1 5184 12274 3136 3139 5467 5467 0.03256472719317571 CLLRCWAP 8 Unmodified _CLLRCWAP_ 0 0 0 ENST00000580188.1_2_17:62503129-62515542:+|nuORF ENST00000580188.1_2_17:62503129-62515542:+|nuORF ENST00000580188.1_2_17:62503129-62515542:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2390441894531 2 481.240958 960.467363 NaN NaN NaN NaN NaN NaN NaN 131.5 1 126.86 126.36 127.36 -4.6359 0 0 0 0.23025 1 25912 25912 0.62683 0 1 5185 11492 3137 3140 5468 5468 -0.01445176298318529 CLPIPVKGV 9 Unmodified _CLPIPVKGV_ 0 0 0 REV__ENST00000260356.5_1_15:39887667-39888120:+|nuORF REV__ENST00000260356.5_1_15:39887667-39888120:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 309.1883239746094 3 309.189496 924.546659 NaN NaN NaN NaN NaN NaN NaN 91.465 1 91.465 90.965 91.965 0 0 0 0 0.23508 1 17874 17874 0.26902 0 1 + 5186 20156 3138 3141 5469 5469 0.0813679392749691 CLPKGLSG 8 Unmodified _CLPKGLSG_ 0 0 0 REV__ENSG00000170074|ENST00000614127|FAM153A REV__ENSG00000170074|ENST00000614127|FAM153A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7127685546875 2 387.712556 773.41056 NaN NaN NaN NaN NaN NaN NaN 130.84 1 130.84 130.34 131.34 0 0 0 0 0.21486 1 25867 25867 1.8442 0 1 + 5187 18138 3139 3142 5470 5470 0.014790994168492944 CLPPQLRVPE 10 Unmodified _CLPPQLRVPE_ 0 0 0 CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.316162109375 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 148.39 1 148.39 147.89 148.89 0 0 0 0 0.22588 1 29695 29695 12.241 1.4167 1 5188 713 3140 3143 5471 5471 0.04758047525319853 CLPPQLRVPE 10 Unmodified _CLPPQLRVPE_ 0 0 0 CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3189086914062 2 576.315709 1150.61686 0.25937 0.00014948 2.2527 0.0012983 2.5121 0.0014478 576.8180798837317 153.84 0.1386 148.58 148.47 148.61 -5.2669 5 3 2 0 0 0 0.67319 1 29825 29825 13.906 1.6654 1 1808600 5189 713 3140 3143 5472 5472 0.04758047525319853 CLRALYFLWKR 11 Unmodified _CLRALYFLWKR_ 0 0 0 ENST00000276704.5_1_8:124243627-124243705:-|nuORF ENST00000276704.5_1_8:124243627-124243705:-|nuORF ENST00000276704.5_1_8:124243627-124243705:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2634582519531 3 490.279708 1467.8173 NaN NaN NaN NaN NaN NaN NaN 160.01 1 154.75 154.25 155.25 -5.2526 0 0 0 0.22632 1 31049 31049 0.00056442 0 1 5190 8429 3141 3144 5473 5473 0.1020994191273985 CLRVAAGAGRL 11 Unmodified _CLRVAAGAGRL_ 0 0 0 REV__nc|ENSG00000008300|Q9NYQ7-2|CELSR3 REV__nc|ENSG00000008300|Q9NYQ7-2|CELSR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7772827148438 2 543.813667 1085.61278 NaN NaN NaN NaN NaN NaN NaN 137.44 1 132.6 132.1 133.1 -4.84 0 0 0 0.22632 1 26478 26478 1.4074 0.99917 1 + 5191 23926 3142 3145 5474 5474 0.07340002822252245 CLTYCDDM 8 Unmodified _CLTYCDDM_ 0 0 0 ENSG00000198889|ENST00000371126|DCAF12L1 ENSG00000198889|ENST00000371126|DCAF12L1 ENSG00000198889|ENST00000371126|DCAF12L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77838134765625 2 482.166464 962.318375 0.44034 0.00021232 1.3155 0.00063429 1.7558 0.00084661 482.16672141495343 89.18 0.49063 85.136 84.855 85.346 -4.0443 14 13 2 0 0 0 0.89766 1 16953 16953 0.12286 0 1 419510 5192 7515 3143 3146 5475 5475 -0.1642911477403004 CMEDMDGR 8 Unmodified _CMEDMDGR_ 0 0 0 ADPRH|p.A172Pfs*12|1|0.32|ENSG00000144843|chr3:119586496-119586496|G/-|frameshift_variant;ENSG00000144843|ENST00000357003|ADPRH ADPRH|p.A172Pfs*12|1|0.32|ENSG00000144843|chr3:119586496-119586496|G/-|frameshift_variant ADPRH|p.A172Pfs*12|1|0.32|ENSG00000144843|chr3:119586496-119586496|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7383117675781 2 478.667163 955.319772 NaN NaN NaN NaN NaN NaN NaN 53.123 1 50.239 49.739 50.739 -2.8837 0 0 0 0.2343 1 10117 10117 0.12286 0 1 5193 86 3144 3147 5476 5476 -0.15967480685264945 CMFAYDILHWI 11 Unmodified _CMFAYDILHWI_ 0 0 0 ENST00000589222.5_2_17:59469571-59469784:+|nuORF ENST00000589222.5_2_17:59469571-59469784:+|nuORF ENST00000589222.5_2_17:59469571-59469784:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 471.22314453125 3 471.22276 1410.64645 NaN NaN NaN NaN NaN NaN NaN 90.882 1 86.788 86.288 87.288 -4.0946 0 0 0 0.22632 1 17315 17315 1.4551 0 1 5194 11583 3145 3148 5477 5477 -0.04244756520870396 CMHRYLRF 8 Unmodified _CMHRYLRF_ 0 0 0 REV__ZNF404|p.H345Qfs*5|1|0.41|ENSG00000176222|chr19:43873178-43873179|TA/-|frameshift_variant REV__ZNF404|p.H345Qfs*5|1|0.41|ENSG00000176222|chr19:43873178-43873179|TA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 563.1829833984375 2 563.275864 1124.53717 0.069278 3.9022E-05 -3.1572 -0.0017784 -3.088 -0.0017394 563.2744777533394 142.19 0.13947 137.16 137.07 137.21 -5.0261 5 3 2 0 0 0 0.98792 1 27388 27388 5.2307 2.2354 1 2251000 + 5195 18502 3146 3149 5478 5478 -0.02011297629701403 CMSFAYRLHAL 11 Unmodified _CMSFAYRLHAL_ 0 0 0 ENST00000246190.10_2_20:32245006-32245126:-|nuORF ENST00000246190.10_2_20:32245006-32245126:-|nuORF ENST00000246190.10_2_20:32245006-32245126:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.88226318359375 3 437.882737 1310.62638 NaN NaN NaN NaN NaN NaN NaN 8.9459 1 8.1517 7.6517 8.6517 -0.79424 0 0 0 0.23698 1 988 988 0.50596 0 1 5196 8208 3147 3150 5479 5479 -0.016505074608176074 CMWWERWMKHW 11 Unmodified _CMWWERWMKHW_ 0 0 0 ENST00000301180.9_1_12:51133363-51135252:+|nuORF ENST00000301180.9_1_12:51133363-51135252:+|nuORF ENST00000301180.9_1_12:51133363-51135252:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4713134765625 2 839.865051 1677.71555 NaN NaN NaN NaN NaN NaN NaN 107.22 1 103.09 102.59 103.59 -4.135 0 0 0 0.23698 1 20622 20622 0 0 1 5197 8556 3148 3151 5480 5480 -0.09619995772959555 CMYIRYFHA 9 Unmodified _CMYIRYFHA_ 0 0 0 nc|ENSG00000257242|G3V211-3|LINC01619 nc|ENSG00000257242|G3V211-3|LINC01619 nc|ENSG00000257242|G3V211-3|LINC01619 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.28271484375 2 602.275529 1202.53651 NaN NaN NaN NaN NaN NaN NaN 150.36 1 145.63 145.13 146.13 -4.7323 0 0 0 0.19636 1 29865 29865 2.4985 2.4252 1 5198 12633 3149 3152 5481 5481 -0.05666137069397337 CNATAWFFE 9 Unmodified _CNATAWFFE_ 0 0 0 REV__ENSG00000109927|ENST00000392793|TECTA REV__ENSG00000109927|ENST00000392793|TECTA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.782470703125 2 544.728935 1087.44332 0.32976 0.00017963 -2.472 -0.0013466 -2.1422 -0.0011669 544.7284005402367 21.689 0.96228 21.689 21.159 22.121 0 67 27 3 0 0 0 0.64764 1 3632 3632 0.96228 0.26461 1 2954300 + 5199 15181 3150 3153 5482 5482 -0.09690738250969844 CNCCCRCCFCC 11 Unmodified _CNCCCRCCFCC_ 0 0 0 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7503662109375 2 630.655523 1259.29649 NaN NaN NaN NaN NaN NaN NaN 123.17 1 123.17 122.67 123.67 0 0 0 0 0.23698 1 24276 24276 0 0 1 5200 6827 3151 3154 5483 5483 -0.32278348653403555 CNCCCRCCFCC 11 Unmodified _CNCCCRCCFCC_ 0 0 0 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.75634765625 2 630.655523 1259.29649 NaN NaN NaN NaN NaN NaN NaN 91.888 1 87.963 87.463 88.463 -3.9251 0 0 0 0.23698 1 17990 17990 0.30703 0.30703 1 5201 6827 3151 3154 5484 5484 -0.32278348653403555 CNCCCRCCFCC 11 Unmodified _CNCCCRCCFCC_ 0 0 0 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7589111328125 2 630.655523 1259.29649 NaN NaN NaN NaN NaN NaN NaN 118.67 1 114.16 113.66 114.66 -4.502 0 0 0 0.22632 1 23399 23399 0 0 1 5202 6827 3151 3154 5485 5485 -0.32278348653403555 CNCCCRCCFCC 11 Unmodified _CNCCCRCCFCC_ 0 0 0 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7589111328125 2 630.655523 1259.29649 NaN NaN NaN NaN NaN NaN NaN 118.68 1 114.18 113.68 114.68 -4.502 0 0 0 0.23698 1 23401 23401 0 0 1 5203 6827 3151 3154 5486 5486 -0.32278348653403555 CNCCCRCCFCC 11 Unmodified _CNCCCRCCFCC_ 0 0 0 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.752197265625 2 630.655523 1259.29649 NaN NaN NaN NaN NaN NaN NaN 131.08 1 126.24 125.74 126.74 -4.8355 0 0 0 0.23698 1 25167 25167 0 0 1 5204 6827 3151 3154 5487 5487 -0.32278348653403555 CNCCCRCCFCC 11 Unmodified _CNCCCRCCFCC_ 0 0 0 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7528076171875 2 630.655523 1259.29649 NaN NaN NaN NaN NaN NaN NaN 152.95 1 147.69 147.19 148.19 -5.2669 0 0 0 0.23698 1 29648 29648 0 0 1 5205 6827 3151 3154 5488 5488 -0.32278348653403555 CNCCCRCCFCC 11 Unmodified _CNCCCRCCFCC_ 0 0 0 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7635498046875 2 630.655523 1259.29649 NaN NaN NaN NaN NaN NaN NaN 53.994 1 50.871 50.371 51.371 -3.1236 0 0 0 0.22632 1 9981 9981 0 0 1 5206 6827 3151 3154 5489 5489 -0.32278348653403555 CNCCCRCCFCC 11 Unmodified _CNCCCRCCFCC_ 0 0 0 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7789306640625 2 630.655523 1259.29649 NaN NaN NaN NaN NaN NaN NaN 91.079 1 87.271 86.771 87.771 -3.8083 0 0 0 0.23698 1 17434 17434 0 0 1 5207 6827 3151 3154 5490 5490 -0.32278348653403555 CNCCCRCCFCC 11 Unmodified _CNCCCRCCFCC_ 0 0 0 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7611083984375 2 630.655523 1259.29649 NaN NaN NaN NaN NaN NaN NaN 107.16 1 103.02 102.52 103.52 -4.135 0 0 0 0.23698 1 20608 20608 0 0 1 5208 6827 3151 3154 5491 5491 -0.32278348653403555 CNCCCRCCFCC 11 Unmodified _CNCCCRCCFCC_ 0 0 0 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7747192382812 2 630.655523 1259.29649 NaN NaN NaN NaN NaN NaN NaN 133.1 1 128.3 127.8 128.8 -4.799 0 0 0 0.23698 1 25617 25617 0 0 1 5209 6827 3151 3154 5492 5492 -0.32278348653403555 CNCCCRCCFCC 11 Unmodified _CNCCCRCCFCC_ 0 0 0 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 ENSG00000183067|ENST00000380588|IGSF5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7656860351562 2 630.655523 1259.29649 NaN NaN NaN NaN NaN NaN NaN 133.19 1 128.39 127.89 128.89 -4.799 0 0 0 0.22632 1 25636 25636 0 0 1 5210 6827 3151 3154 5493 5493 -0.32278348653403555 CNERESELV 9 Unmodified _CNERESELV_ 0 0 0 REV__ENSG00000151466|ENST00000281142|SCLT1 REV__ENSG00000151466|ENST00000281142|SCLT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015380859375 3 360.165968 1077.47607 NaN NaN NaN NaN NaN NaN NaN 133.53 1 128.89 128.39 129.39 -4.6399 0 0 0 0.23508 1 26327 26327 2.7352 0 1 + 5211 17068 3152 3155 5494 5494 -0.0595657591879899 CNESYSYHSGN 11 Unmodified _CNESYSYHSGN_ 0 0 0 REV__ENST00000446226.2_1_9:98680749-98680890:+|nuORF REV__ENST00000446226.2_1_9:98680749-98680890:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7763061523438 2 630.732934 1259.45132 NaN NaN NaN NaN NaN NaN NaN 86.75 1 83.021 82.521 83.521 -3.7289 0 0 0 0.23476 1 16593 16593 4.5289 1.5336 1 + 5212 21759 3153 3156 5495 5495 -0.16803255792160599 CNFGRLEKQ 9 Unmodified _CNFGRLEKQ_ 0 0 0 ENSG00000256188|ENST00000539585|TAS2R30 ENSG00000256188|ENST00000539585|TAS2R30 ENSG00000256188|ENST00000539585|TAS2R30 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.2286682128906 3 365.518564 1093.53386 NaN NaN NaN NaN NaN NaN NaN 43.386 1 40.667 40.167 41.167 -2.7191 0 0 0 0.19649 1 8133 8133 0.40827 0 1 5213 7936 3154 3157 5496 5496 -0.009162692027075536 CNMCNTPK 8 Unmodified _CNMCNTPK_ 0 0 0 nc|ENSG00000132485|O95218-2|ZRANB2;ENSG00000132485|ENST00000370920|ZRANB2 nc|ENSG00000132485|O95218-2|ZRANB2 nc|ENSG00000132485|O95218-2|ZRANB2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.1237487792969 3 304.124169 909.350678 NaN NaN NaN NaN NaN NaN NaN 155.36 1 150.08 149.58 150.58 -5.2854 0 0 0 0.21486 1 30136 30136 0.40072 0 1 5214 3735 3155 3158 5497 5497 -0.10762282580378724 CNTDGYALA 9 Unmodified _CNTDGYALA_ 0 0 0 REV__ENSG00000160111|ENST00000443236|CPAMD8 REV__ENSG00000160111|ENST00000443236|CPAMD8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1697998046875 3 309.800737 926.380382 -0.48752 -0.00015103 1.2618 0.00039091 0.7743 0.00023988 309.80108246033376 112.45 0.51056 107.99 107.77 108.29 -4.4539 26 14 2 0 0 0 0.87836 1 22179 22179 5.7319 0.83484 1 1297400 + 5215 17394 3156 3159 5498 5498 -0.08575304039038656 CNVEIWNTLWY 11 Unmodified _CNVEIWNTLWY_ 0 0 0 REV__ENST00000486949.5_1_7:105912936-105925330:-|nuORF REV__ENST00000486949.5_1_7:105912936-105925330:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 480.8935852050781 3 480.892067 1439.65437 NaN NaN NaN NaN NaN NaN NaN 4.0443 1 3.0355 2.5355 3.5355 -1.0089 0 0 0 0.23698 1 7 7 0.094841 0 1 + 5216 22246 3157 3160 5499 5499 -0.047869059997310615 CPAASEHSE 9 Unmodified _CPAASEHSE_ 0 0 0 ENST00000333483.14_1_17:60501366-60501510:+|nuORF ENST00000333483.14_1_17:60501366-60501510:+|nuORF ENST00000333483.14_1_17:60501366-60501510:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2489318847656 2 465.684724 929.354895 0.11732 5.4636E-05 0.26791 0.00012476 0.38523 0.0001794 465.68473674653865 122.93 0.4563 122.93 122.82 123.27 0 16 12 2 0 0 0 0.6215 1 24232 24232 0.40827 0 1 870620 5217 8791 3158 3161 5500 5500 -0.11260778561438656 CPASMVLQL 9 Unmodified _CPASMVLQL_ 0 0 0 REV__ENSG00000196600|ENST00000306494|SLC22A25 REV__ENSG00000196600|ENST00000306494|SLC22A25 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2440185546875 2 481.245906 960.477259 NaN NaN NaN NaN NaN NaN NaN 90.613 1 86.754 86.254 87.254 -3.8595 0 0 0 0.18755 1 17728 17728 2.8827 1.4276 1 + 5218 19262 3159 3162 5501 5501 -0.004560330835602144 CPCCCLRPV 9 Unmodified _CPCCCLRPV_ 0 0 0 ENSG00000241241|ENST00000440582|KRTAP4-16 ENSG00000241241|ENST00000440582|KRTAP4-16 ENSG00000241241|ENST00000440582|KRTAP4-16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 497.2149658203125 2 497.210486 992.406419 NaN NaN NaN NaN NaN NaN NaN 71.101 1 67.634 67.134 68.134 -3.467 0 0 0 0.19684 1 13472 13472 1.2148 1.092 1 5219 7851 3160 3163 5502 5502 -0.09008772664390108 CPCCPAHCCC 10 Unmodified _CPCCPAHCCC_ 0 0 0 nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF;ILDR1|p.P304Lfs*32|1|0.31|ENSG00000145103|chr3:121993838-121993838|G/-|frameshift_variant;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;ENSG00000145103|ENST00000344209|ILDR1 nc|ENSG00000145103|Q86SU0-3|ILDR1 nc|ENSG00000145103|Q86SU0-3|ILDR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 520.1380004882812 2 520.140889 1038.26722 NaN NaN NaN NaN NaN NaN NaN 172.1 1 167.31 166.81 167.81 -4.7898 0 0 0 0.22588 1 35036 35036 0 0 1 5220 4593 3161 3164 5503 5503 -0.25037801615758326 CPCCPAHCCC 10 Unmodified _CPCCPAHCCC_ 0 0 0 nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF;ILDR1|p.P304Lfs*32|1|0.31|ENSG00000145103|chr3:121993838-121993838|G/-|frameshift_variant;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;ENSG00000145103|ENST00000344209|ILDR1 nc|ENSG00000145103|Q86SU0-3|ILDR1 nc|ENSG00000145103|Q86SU0-3|ILDR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 520.1390380859375 2 520.140889 1038.26722 NaN NaN NaN NaN NaN NaN NaN 172.55 1 167.76 167.26 168.26 -4.7898 0 0 0 0.22588 1 35156 35156 0 0 1 5221 4593 3161 3164 5504 5504 -0.25037801615758326 CPCCPAHCCC 10 Unmodified _CPCCPAHCCC_ 0 0 0 nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF;ILDR1|p.P304Lfs*32|1|0.31|ENSG00000145103|chr3:121993838-121993838|G/-|frameshift_variant;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;ENSG00000145103|ENST00000344209|ILDR1 nc|ENSG00000145103|Q86SU0-3|ILDR1 nc|ENSG00000145103|Q86SU0-3|ILDR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 520.139892578125 2 520.140889 1038.26722 NaN NaN NaN NaN NaN NaN NaN 166.38 1 161.43 160.93 161.93 -4.9484 0 0 0 2.8426 1 32598 32598 0 0 1 5222 4593 3161 3164 5505 5505 -0.25037801615758326 CPCCPAHCCC 10 Unmodified _CPCCPAHCCC_ 0 0 0 nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF;ILDR1|p.P304Lfs*32|1|0.31|ENSG00000145103|chr3:121993838-121993838|G/-|frameshift_variant;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;ENSG00000145103|ENST00000344209|ILDR1 nc|ENSG00000145103|Q86SU0-3|ILDR1 nc|ENSG00000145103|Q86SU0-3|ILDR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 520.1397094726562 2 520.140889 1038.26722 NaN NaN NaN NaN NaN NaN NaN 174.63 1 169.74 169.24 170.24 -4.8916 0 0 0 0.22588 1 34773 34773 0 0 1 5223 4593 3161 3164 5506 5506 -0.25037801615758326 CPCCPDSCCC 10 Unmodified _CPCCPDSCCC_ 0 0 0 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.2745361328125 3 345.084 1032.23017 NaN NaN NaN NaN NaN NaN NaN 9.5252 1 9.5252 9.0252 10.025 0 0 0 0 0.22588 1 1110 1110 0 0 1 5224 4462 3162 3165 5507 5507 -0.2846551795216783 CPCCPDSCCC 10 Unmodified _CPCCPDSCCC_ 0 0 0 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.1767272949219 3 345.084 1032.23017 NaN NaN NaN NaN NaN NaN NaN 24.142 1 24.142 23.642 24.642 0 0 0 0 2.8426 1 4148 4148 0 0 1 5225 4462 3162 3165 5508 5508 -0.2846551795216783 CPCCPDSCCC 10 Unmodified _CPCCPDSCCC_ 0 0 0 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.8354187011719 3 345.084 1032.23017 NaN NaN NaN NaN NaN NaN NaN 45.49 1 45.49 44.99 45.99 0 0 0 0 2.8426 1 8552 8552 0 0 1 5226 4462 3162 3165 5509 5509 -0.2846551795216783 CPCCPDSCCC 10 Unmodified _CPCCPDSCCC_ 0 0 0 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.20477294921875 3 345.084 1032.23017 NaN NaN NaN NaN NaN NaN NaN 33.511 1 31.194 30.694 31.694 -2.3175 0 0 0 2.8426 1 6130 6130 0 0 1 5227 4462 3162 3165 5510 5510 -0.2846551795216783 CPCCPDSCCC 10 Unmodified _CPCCPDSCCC_ 0 0 0 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.133056640625 3 345.084 1032.23017 NaN NaN NaN NaN NaN NaN NaN 55.173 1 52.29 51.79 52.79 -2.8837 0 0 0 2.8426 1 10552 10552 0 0 1 5228 4462 3162 3165 5511 5511 -0.2846551795216783 CPCCPDSCCC 10 Unmodified _CPCCPDSCCC_ 0 0 0 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.0972900390625 3 345.084 1032.23017 NaN NaN NaN NaN NaN NaN NaN 114.94 1 110.47 109.97 110.97 -4.4726 0 0 0 0.22588 1 22655 22655 0 0 1 5229 4462 3162 3165 5512 5512 -0.2846551795216783 CPCCPDSCCC 10 Unmodified _CPCCPDSCCC_ 0 0 0 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.1283264160156 3 345.084 1032.23017 NaN NaN NaN NaN NaN NaN NaN 116.28 1 111.8 111.3 112.3 -4.486 0 0 0 0.22588 1 22929 22929 0 0 1 5230 4462 3162 3165 5513 5513 -0.2846551795216783 CPCESLPLCRT 11 Unmodified _CPCESLPLCRT_ 0 0 0 REV__nc|ENSG00000197558|A2VEC9|SSPOP REV__nc|ENSG00000197558|A2VEC9|SSPOP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 611.3744506835938 2 611.274869 1220.53518 NaN NaN NaN NaN NaN NaN NaN 172.61 1 167.73 167.23 168.23 -4.881 0 0 0 0.22632 1 34273 34273 0.172 0 1 + 5231 24229 3163 3166 5514 5514 -0.06626139220475125 CPEGGHCVA 9 Unmodified _CPEGGHCVA_ 0 0 0 REV__ENST00000572400.5_1_16:14234415-14234826:+|nuORF REV__ENST00000572400.5_1_16:14234415-14234826:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2286376953125 2 436.673105 871.331658 0.0058593 2.5586E-06 1.2546 0.00054783 1.2604 0.00055039 436.673541203547 51.632 1.0177 48.587 48.226 49.244 -3.0453 59 28 3 0 0 0 0.46541 1 9451 9451 21.747 2.3076 1 4421400 + 5232 23174 3164 3167 5515 5515 -0.10915495879771697 CPEGGHCVA 9 Unmodified _CPEGGHCVA_ 0 0 0 REV__ENST00000572400.5_1_16:14234415-14234826:+|nuORF REV__ENST00000572400.5_1_16:14234415-14234826:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.673105 871.331658 -0.29918 -0.00013064 1.4837 0.00064791 1.1846 0.00051727 436.67367121826254 51.423 1.1683 48.541 48.07 49.239 -2.8824 -0.0081009 5.9868E-05 NaN 21.747 71 33 3 NaN NaN NaN NaN 0 NaN NaN 0 7254400 + 5233 23174 3164 3167 -0.10915495879771697 CPEGGHCVA 9 Unmodified _CPEGGHCVA_ 0 0 0 REV__ENST00000572400.5_1_16:14234415-14234826:+|nuORF REV__ENST00000572400.5_1_16:14234415-14234826:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 436.673105 871.331658 -0.23818 -0.000104 1.4732 0.00064331 1.235 0.0005393 436.67367969912493 51.571 1.1439 48.519 48.169 49.313 -3.0517 -0.029866 5.0666E-05 NaN 21.747 63 32 3 NaN NaN NaN NaN 0 NaN NaN 0 3947100 + 5234 23174 3164 3167 -0.10915495879771697 CPEYLVDYLE 10 Unmodified _CPEYLVDYLE_ 0 0 0 ENSG00000036672|ENST00000260187|USP2 ENSG00000036672|ENST00000260187|USP2 ENSG00000036672|ENST00000260187|USP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76318359375 2 622.281197 1242.54784 0.61164 0.00038061 -0.33998 -0.00021156 0.27166 0.00016905 622.2811741564974 33.194 0.40762 30.978 30.84 31.248 -2.2158 18 11 2 0 0 0 0.51405 1 5803 5803 3.8763 0 1 487220 5235 1174 3165 3168 5516 5516 -0.06373081284937143 CPFFLLLFL 9 Unmodified _CPFFLLLFL_ 0 0 0 ENST00000299980.8_2_16:71766487-71766874:-|nuORF ENST00000299980.8_2_16:71766487-71766874:-|nuORF ENST00000299980.8_2_16:71766487-71766874:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 556.839599609375 2 556.814282 1111.61401 NaN NaN NaN NaN NaN NaN NaN 10.274 1 9.2073 8.7073 9.7073 -1.0664 0 0 0 0.23508 1 1103 1103 0.6015 0 1 5236 8540 3166 3169 5517 5517 0.06266824138447191 CPGFFLIVVA 10 Unmodified _CPGFFLIVVA_ 0 0 0 REV__ENSG00000172208|ENST00000624868|OR4X2 REV__ENSG00000172208|ENST00000624868|OR4X2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2621459960938 2 533.293714 1064.57287 0.11843 6.316E-05 -0.45643 -0.00024341 -0.338 -0.00018025 533.293440892096 33.177 0.48727 30.86 30.627 31.114 -2.3175 24 13 2 0 0 0 0.88157 1 6044 6044 12.532 4.6214 1 1872000 + 5237 18276 3167 3170 5518 5518 0.043170630989834535 CPGFFLIVVA 10 Unmodified _CPGFFLIVVA_ 0 0 0 REV__ENSG00000172208|ENST00000624868|OR4X2 REV__ENSG00000172208|ENST00000624868|OR4X2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.261474609375 2 533.293714 1064.57287 0.47331 0.00025241 -0.46966 -0.00025047 0.0036453 1.944E-06 533.293344007837 33.154 0.57874 30.939 30.669 31.248 -2.2158 28 16 2 0 0 0 0.68674 1 5775 5775 12.532 1.4171 1 1495900 + 5238 18276 3167 3170 5519 5519 0.043170630989834535 CPGFFLIVVA 10 Unmodified _CPGFFLIVVA_ 0 0 0 REV__ENSG00000172208|ENST00000624868|OR4X2 REV__ENSG00000172208|ENST00000624868|OR4X2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 533.293714 1064.57287 0.47331 0.00025241 -0.46966 -0.00025047 0.0036453 1.944E-06 533.293344007837 33.154 0.57874 30.939 30.669 31.248 -2.2158 -0.032019 -9.7378E-07 NaN 12.532 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1495900 + 5239 18276 3167 3170 0.043170630989834535 CPGRHQHRP 9 Unmodified _CPGRHQHRP_ 0 0 0 REV__ENST00000361545.9_1_7:73819550-73819868:+|nuORF REV__ENST00000361545.9_1_7:73819550-73819868:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7904052734375 2 544.269958 1086.52536 0.35382 0.00019257 -0.61963 -0.00033725 -0.26581 -0.00014467 544.2690348825389 111.06 0.13844 111.06 110.96 111.1 0 5 3 2 0 0 0 0.59016 1 21847 21847 0.40827 0.28045 1 645880 + 5240 20884 3168 3171 5520 5520 -0.014437783286666672 CPICLHIY 8 Unmodified _CPICLHIY_ 0 0 0 ENST00000496406.1_1_2:160084338-160084836:+|nuORF ENST00000496406.1_1_2:160084338-160084836:+|nuORF ENST00000496406.1_1_2:160084338-160084836:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2347106933594 2 481.235341 960.45613 0.29455 0.00014175 -1.3226 -0.0006365 -1.0281 -0.00049475 481.23467486280174 66.524 0.42458 63.027 62.795 63.219 -3.4965 20 11 2 0 0 0 0.67903 1 12500 12500 17.087 6.2626 1 952300 5241 10577 3169 3172 5521 5521 -0.02567998392453319 CPICLHIY 8 Unmodified _CPICLHIY_ 0 0 0 ENST00000496406.1_1_2:160084338-160084836:+|nuORF ENST00000496406.1_1_2:160084338-160084836:+|nuORF ENST00000496406.1_1_2:160084338-160084836:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2345886230469 2 481.235341 960.45613 0.24942 0.00012003 -1.3339 -0.00064193 -1.0845 -0.00052191 481.23462649160695 66.279 0.52625 62.995 62.791 63.317 -3.2832 22 14 2 0 0 0 0.67903 2 12511 12511;12521 17.087 3.5787 1 949860 5242 10577 3169 3172 5522;5523 5522 -0.02567998392453319 CPITDQDPIRS 11 Unmodified _CPITDQDPIRS_ 0 0 0 REV__ENST00000555784.5_1_10:84711227-84745358:+|nuORF REV__ENST00000555784.5_1_10:84711227-84745358:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7822875976562 2 622.80062 1243.58669 NaN NaN NaN NaN NaN NaN NaN 147.54 1 142.49 141.99 142.99 -5.0595 0 0 0 0.23519 1 28566 28566 4.1895 0.59301 1 + 5243 18983 3170 3173 5524 5524 -0.025363559305560557 CPKKTPSSAQ 10 Unmodified _CPKKTPSSAQ_ 0 0 0 REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6967163085938 2 523.768591 1045.52263 -0.14562 -7.627E-05 1.0416 0.00054555 0.89597 0.00046928 523.7690181849497 66.973 0.10936 66.973 66.904 67.014 0 4 2 2 0 0 0 1.1169 1 12948 12948 0.20733 0 1 779110 + 5244 16618 3171 3174 5525 5525 0.0016890870315364737 CPLISLIVH 9 Unmodified _CPLISLIVH_ 0 0 0 ENST00000507317.1_1_5:39169945-39170098:-|nuORF ENST00000507317.1_1_5:39169945-39170098:-|nuORF ENST00000507317.1_1_5:39169945-39170098:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.1968078613281 3 332.196651 993.568123 NaN NaN NaN NaN NaN NaN NaN 57.831 1 54.92 54.42 55.42 -2.9105 0 0 0 0.23508 1 11099 11099 2.9952 0.26005 1 5245 10699 3172 3175 5526 5526 0.07108178956195843 CPLKREES 8 Unmodified _CPLKREES_ 0 0 0 REV__ENSG00000111046|ENST00000228641|MYF6 REV__ENSG00000111046|ENST00000228641|MYF6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24298095703125 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 32.345 1 32.345 31.845 32.845 0 0 0 0 0.22674 1 5874 5874 14.838 11.251 1 + 5246 15227 3173 3176 5527 5527 -0.011950493596373235 CPLSNSKSVRL 11 Unmodified _CPLSNSKSVRL_ 0 0 0 sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1;sp|F5HC33|US09_HCMVMMembraneglycoproteinUS9OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US9PE=3SV=1 sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1 sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2838745117188 2 602.329347 1202.64414 NaN NaN NaN NaN NaN NaN NaN 125.18 1 125.18 124.68 125.68 0 0 0 0 0.22632 1 24687 24687 0.172 0.12821 1 5247 25722 3174 3177 5528 5528 0.05092531065702133 CPLSNSKSVRL 11 Unmodified _CPLSNSKSVRL_ 0 0 0 sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1;sp|F5HC33|US09_HCMVMMembraneglycoproteinUS9OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US9PE=3SV=1 sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1 sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2882080078125 2 602.329347 1202.64414 NaN NaN NaN NaN NaN NaN NaN 129.63 1 129.63 129.13 130.13 0 0 0 0 0.22632 1 25613 25613 0.58532 0.57804 1 5248 25722 3174 3177 5529 5529 0.05092531065702133 CPPISVYSCLL 11 Unmodified _CPPISVYSCLL_ 0 0 0 REV__ENST00000373644.4_1_10:70331986-70332268:+|nuORF REV__ENST00000373644.4_1_10:70331986-70332268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 398.8612976074219 3 398.868094 1193.58245 NaN NaN NaN NaN NaN NaN NaN 11.507 1 11.507 11.007 12.007 0 0 0 0 0.23698 1 1530 1530 0.094841 0 1 + 5249 21044 3175 3178 5530 5530 -0.006595366778128664 CPRRNIFFFQR 11 Unmodified _CPRRNIFFFQR_ 0 0 0 REV__nc|ENSG00000122512|P54278-3|PMS2 REV__nc|ENSG00000122512|P54278-3|PMS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.38916015625 2 742.390605 1482.76666 NaN NaN NaN NaN NaN NaN NaN 169.42 1 169.42 168.92 169.92 0 0 0 0 0.22632 1 34773 34773 1.4074 1.2354 1 + 5250 15694 3176 3179 5531 5531 0.04458412587746352 CPSGIGHFIR 10 Unmodified _CPSGIGHFIR_ 0 0 0 REV__ENSG00000160957|ENST00000617875|RECQL4 REV__ENSG00000160957|ENST00000617875|RECQL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7955322265625 2 543.779293 1085.54403 NaN NaN NaN NaN NaN NaN NaN 144.57 1 144.57 144.07 145.07 0 0 0 0 0.22588 1 28885 28885 10.151 1.4052 1 + 5251 17443 3177 3180 5532 5532 0.004683385225234815 CPTLLGQPSQ 10 Unmodified _CPTLLGQPSQ_ 0 0 0 ENST00000263280.10_1_19:47222986-47223193:-|nuORF ENST00000263280.10_1_19:47222986-47223193:-|nuORF ENST00000263280.10_1_19:47222986-47223193:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2626953125 2 522.263142 1042.51173 -0.5912 -0.00030876 0.7009 0.00036605 0.1097 5.7293E-05 522.263506995107 96.497 0.79436 92.262 91.915 92.709 -4.2348 41 22 2 0 0 0 0.32535 1 18374 18374 0.84494 0 1 4409700 5252 8324 3178 3181 5533 5533 -0.007824936711358532 CPTTICDLDT 10 Unmodified _CPTTICDLDT_ 0 0 0 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant;SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2836303710938 2 541.23065 1080.44675 NaN NaN NaN NaN NaN NaN NaN 135.42 1 130.78 130.28 131.28 -4.6399 0 0 0 0.22552 1 26708 26708 18.146 2.2992 1 5253 4098 3179 3182 5534 5534 -0.09025856259290777 CPTTICDLDT 10 Unmodified _CPTTICDLDT_ 0 0 0 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant;SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant;ENSG00000137642|ENST00000260197|SORL1 SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant SORL1|p.M1581Cfs*34|2|0.28|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2689208984375 2 541.23065 1080.44675 NaN NaN NaN NaN NaN NaN NaN 135.44 1 130.8 130.3 131.3 -4.6399 0 0 0 2.8426 1 26713 26713 0.84494 0.43668 1 5254 4098 3179 3182 5535 5535 -0.09025856259290777 CPVSHNSMGY 10 Unmodified _CPVSHNSMGY_ 0 0 0 ENST00000524509.1_1_11:47205895-47206045:-|nuORF ENST00000524509.1_1_11:47205895-47206045:-|nuORF ENST00000524509.1_1_11:47205895-47206045:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7692260742188 2 547.723326 1093.4321 NaN NaN NaN NaN NaN NaN NaN 70.008 1 70.008 69.508 70.508 0 0 0 0 0.22588 1 13556 13556 7.2892 0.56607 1 5255 10883 3180 3183 5536 5536 -0.11087883616755789 CQEKRVSEY 9 Unmodified _CQEKRVSEY_ 0 0 0 ENST00000253247.8_1_17:65739971-65740130:+|nuORF ENST00000253247.8_1_17:65739971-65740130:+|nuORF ENST00000253247.8_1_17:65739971-65740130:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20709228515625 3 381.181729 1140.52336 NaN NaN NaN NaN NaN NaN NaN 20.363 1 18.967 18.467 19.467 -1.3966 0 0 0 0.23508 1 3401 3401 8.1555 3.2585 1 5256 8237 3181 3184 5537 5537 -0.04128296647786556 CQKVYWLF 8 Unmodified _CQKVYWLF_ 0 0 0 REV__nc|ENSG00000189221|P21397-2|MAOA;REV__nc|ENSG00000069535|P27338-2|MAOB REV__nc|ENSG00000069535|P27338-2|MAOB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7763061523438 2 543.775688 1085.53682 NaN NaN NaN NaN NaN NaN NaN 27.48 1 25.558 25.058 26.058 -1.9222 0 0 0 0.2396 1 4599 4599 0.0082765 0 1 + 5257 19202;14242 3182 3185 5538 5538 -0.0025239407791559643 CQLAPERG 8 Unmodified _CQLAPERG_ 0 0 0 ENST00000440963.1_2_14:104029302-104053625:+|nuORF;nc|ENSG00000256053|Q96IL0-2|COA8;ENST00000554625.5_1_14:104029338-104040509:+|nuORF;ENSG00000256053|ENST00000409074|COA8;nc|ENSG00000256053|Q96IL0|COA8 ENST00000440963.1_2_14:104029302-104053625:+|nuORF ENST00000440963.1_2_14:104029302-104053625:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2148742675781 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 66.909 1 63.8 63.3 64.3 -3.1086 0 0 0 0.20896 1 12972 12972 18.135 0 1 5258 7935 3183 3186 5539 5539 -0.023875877025943737 CQRENSFYVD 10 Unmodified _CQRENSFYVD_ 0 0 0 POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF;POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7551879882812 2 630.769319 1259.52409 NaN NaN NaN NaN NaN NaN NaN 104.44 1 100.22 99.719 100.72 -4.2183 0 0 0 2.8426 1 20544 20544 0.26539 0.23918 1 5259 6496 3184 3187 5540 5540 -0.09529501998736123 CQRHTSPQ 8 Unmodified _CQRHTSPQ_ 0 0 0 ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENST00000473016.1_1_2:74120109-74129648:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7225341796875 2 478.721975 955.429398 NaN NaN NaN NaN NaN NaN NaN 60.783 1 57.85 57.35 58.35 -2.9333 0 0 0 0.21039 1 11703 11703 16.942 2.3606 1 5260 10233 3185 3188 5541 5541 -0.050099709594064734 CQSEPMSAC 9 Unmodified _CQSEPMSAC_ 0 0 0 REV__ENST00000361479.9_1_13:20246111-20246267:+|nuORF REV__ENST00000361479.9_1_13:20246111-20246267:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.189697265625 3 319.115451 954.324523 NaN NaN NaN NaN NaN NaN NaN 126.93 1 122.31 121.81 122.81 -4.6172 0 0 0 0.23508 1 25028 25028 1.1933 0.735 1 + 5261 20882 3186 3189 5542 5542 -0.15446596542506086 CQSEPMSAC 9 Unmodified _CQSEPMSAC_ 0 0 0 REV__ENST00000361479.9_1_13:20246111-20246267:+|nuORF REV__ENST00000361479.9_1_13:20246111-20246267:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.1784973144531 3 319.115451 954.324523 NaN NaN NaN NaN NaN NaN NaN 128.61 1 123.98 123.48 124.48 -4.6292 0 0 0 0.23508 1 25355 25355 1.1933 0.735 1 + 5262 20882 3186 3189 5543 5543 -0.15446596542506086 CQSNTYFG 8 Unmodified _CQSNTYFG_ 0 0 0 REV__ENST00000591551.1_1_19:44610541-44612434:+|nuORF REV__ENST00000591551.1_1_19:44610541-44612434:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.235107421875 2 460.18436 918.354167 -0.065803 -3.0282E-05 1.1011 0.00050673 1.0353 0.00047645 460.1848179798514 78.734 0.52819 75.27 75.002 75.53 -3.4633 27 14 2 0 0 0 0.89552 1 15341 15341 19.439 14.208 1 1959500 + 5263 19905 3187 3190 5544 5544 -0.10827573210485752 CREGARRAF 9 Unmodified _CREGARRAF_ 0 0 0 ENST00000488316.1_1_20:62290811-62293163:+|nuORF;ENST00000370018.7_1_20:62290811-62293901:+|nuORF;ENST00000356810.5_1_20:62290811-62293793:+|nuORF;ENST00000508582.6_1_20:62290811-62293901:+|nuORF ENST00000488316.1_1_20:62290811-62293163:+|nuORF ENST00000488316.1_1_20:62290811-62293163:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 533.272167 1064.52978 NaN NaN NaN NaN NaN NaN NaN 165.85 1 160.87 160.37 161.37 -4.9811 0 0 0 0.19704 1 32455 32455 0.37959 0.30633 1 5264 8971 3188 3191 5545 5545 9.686094244898413E-05 CRFAGSYDYY 10 Unmodified _CRFAGSYDYY_ 0 0 0 REV__MFI2|p.V627Cfs*29|1|0.15|ENSG00000163975|chr3:197006608-197006609|-/A|frameshift_variant REV__MFI2|p.V627Cfs*29|1|0.15|ENSG00000163975|chr3:197006608-197006609|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.757080078125 2 622.755681 1243.49681 NaN NaN NaN NaN NaN NaN NaN 53.206 1 50.11 49.61 50.61 -3.0954 0 0 0 0.22588 1 9834 9834 6.2058 1.3088 1 + 5265 17633 3189 3192 5546 5546 -0.1151998553912108 CRGAKGPS 8 Unmodified _CRGAKGPS_ 0 0 0 REV__ENST00000501356.5_1_11:94884357-94884579:+|nuORF REV__ENST00000501356.5_1_11:94884357-94884579:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.72247314453125 2 388.197605 774.380657 NaN NaN NaN NaN NaN NaN NaN 68.217 1 68.217 67.717 68.717 0 0 0 0 0.21486 1 13187 13187 7.2892 1.5288 1 + 5266 22431 3190 3193 5547 5547 -0.015558395284983817 CRGCCGGC 8 Unmodified _CRGCCGGC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 758.710205078125 1 758.220081 757.212805 -0.43838 -0.00033239 1.2063 0.00091466 0.76795 0.00058228 758.2226819379208 10.744 1.161 9.6507 9.2242 10.385 -1.0936 55 32 3 0 0 0 8448 1 1321 1321 0 0 1 340270 5267 12644 3191 3194 5548 5548 -0.1755130938062166 CRGCCGGC 8 Unmodified _CRGCCGGC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 758.2221069335938 1 758.220081 757.212805 -1.4148 -0.0010728 0.89896 0.00068161 -0.51588 -0.00039115 758.2232278772104 9.4592 0.64742 8.4245 8.2328 8.8802 -1.0347 26 17 4 0 0 0 8448 1 1018 1018 0 0 1 569970 5268 12644 3191 3194 5549 5549 -0.1755130938062166 CRGCCGGC 8 Unmodified _CRGCCGGC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 759.0986328125 1 758.220081 757.212805 -1.4151 -0.001073 0.42791 0.00032445 -0.9872 -0.00074852 758.2233714464875 11.979 1.058 10.858 10.426 11.484 -1.1206 64 30 4 0 0 0 8448 1 1339 1339 0 0 1 1066200 5269 12644 3191 3194 5550 5550 -0.1755130938062166 CRGCCGGC 8 Unmodified _CRGCCGGC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 758.220081 757.212805 0.32393 0.00024561 0.27376 0.00020757 0.59769 0.00045318 758.222045915508 11.301 1.4338 11.301 10.285 11.719 0 0.23875 -0.00022786 NaN 0 83 40 3 NaN NaN NaN NaN 0 NaN NaN 0 670270 5270 12644 3191 3194 -0.1755130938062166 CRGCCGGC 8 Unmodified _CRGCCGGC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 758.220081 757.212805 0.32407 0.00024572 -0.20641 -0.00015651 0.11766 8.9212E-05 758.221861485377 9.9817 0.27499 9.9817 9.7575 10.033 0 0.16551 -0.00092345 NaN 0 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 482440 5271 12644 3191 3194 -0.1755130938062166 CRGCCGGC 8 Unmodified _CRGCCGGC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 758.220081 757.212805 -0.049635 -3.7634E-05 2.2648 0.0017172 2.2152 0.0016796 758.2228931234164 12.038 0.21432 11.028 10.854 11.069 -1.0098 -0.034287 0.0012818 NaN 0 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 247020 5272 12644 3191 3194 -0.1755130938062166 CRGGGSPK 8 Unmodified _CRGGGSPK_ 0 0 0 REV__nc|ENSG00000101049|Q9HBY8-3|SGK2 REV__nc|ENSG00000101049|Q9HBY8-3|SGK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2085876464844 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 65.465 1 62.181 61.681 62.681 -3.2832 0 0 0 0.23487 1 12308 12308 0.25148 0 1 + 5273 23974 3192 3195 5551 5551 -0.02476126045564797 CRHCAWHRGC 10 Unmodified _CRHCAWHRGC_ 0 0 0 ENST00000467370.5_1_3:125824416-125834086:-|nuORF ENST00000467370.5_1_3:125824416-125834086:-|nuORF ENST00000467370.5_1_3:125824416-125834086:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 615.1803588867188 2 614.755304 1227.49605 NaN NaN NaN NaN NaN NaN NaN 8.4686 1 7.6914 7.1914 8.1914 -0.77718 0 0 0 0.22588 1 882 882 0 0 1 5274 10146 3193 3196 5552 5552 -0.10859381940827006 CRISNLIVL 9 Unmodified _CRISNLIVL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.17791748046875 3 344.207438 1029.60049 NaN NaN NaN NaN NaN NaN NaN 107.65 1 103.33 102.83 103.83 -4.32 0 0 0 0.23508 1 21205 21205 1.0715 0 1 5275 1532 3194 3197 5553 5553 0.08686966359186954 CRISNLIVL 9 Unmodified _CRISNLIVL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.2265319824219 3 344.207438 1029.60049 NaN NaN NaN NaN NaN NaN NaN 107.81 1 103.49 102.99 103.99 -4.32 0 0 0 0.23508 1 21237 21237 1.0715 0 1 5276 1532 3194 3197 5554 5554 0.08686966359186954 CRKLLDMT 8 Unmodified _CRKLLDMT_ 0 0 0 nc|ENSG00000160323|Q76LX8-3|ADAMTS13;ENSG00000160323|ENST00000355699|ADAMTS13;nc|ENSG00000160323|Q76LX8|ADAMTS13;ENST00000485925.5_1_9:136305545-136324175:+|nuORF nc|ENSG00000160323|Q76LX8-3|ADAMTS13 nc|ENSG00000160323|Q76LX8-3|ADAMTS13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25555419921875 2 490.256805 978.499057 NaN NaN NaN NaN NaN NaN NaN 123.81 1 119.23 118.73 119.73 -4.5757 0 0 0 0.19954 1 24407 24407 24.674 7.7316 1 5277 5250 3195 3198 5555 5555 0.00894771665002736 CRLDWANGYY 10 Unmodified _CRLDWANGYY_ 0 0 0 ENST00000471837.1_1_7:121513505-121606995:+|nuORF;PTPRZ1|p.N48Ifs*26|1|0.27|ENSG00000106278|chr7:121967963-121967963|A/-|frameshift_variant;PTPRZ1|p.C264Vfs*14|1|0.24|ENSG00000106278|chr7:121983974-121983974|T/-|frameshift_variant;nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1 ENST00000471837.1_1_7:121513505-121606995:+|nuORF ENST00000471837.1_1_7:121513505-121606995:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7782592773438 2 630.776948 1259.53934 NaN NaN NaN NaN NaN NaN NaN 114.26 1 109.79 109.29 110.29 -4.4726 0 0 0 0.22588 1 22516 22516 6.7232 2.7788 1 5278 2371 3196 3199 5556 5556 -0.08004590410882884 CRLRRRCC 8 Unmodified _CRLRRRCC_ 0 0 0 ENST00000240333.10_1_17:47785230-47785281:-|nuORF ENST00000240333.10_1_17:47785230-47785281:-|nuORF ENST00000240333.10_1_17:47785230-47785281:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2719116210938 2 533.27059 1064.52663 NaN NaN NaN NaN NaN NaN NaN 179.73 1 174.86 174.36 175.36 -4.868 0 0 0 0.2396 1 35817 35817 0.12286 0 1 5279 8185 3197 3200 5557 5557 -0.003056035557619907 CRPTALVR 8 Unmodified _CRPTALVR_ 0 0 0 REV__ENST00000260643.6_1_2:27357356-27357503:-|nuORF REV__ENST00000260643.6_1_2:27357356-27357503:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.7593994140625 2 458.263279 914.512005 0.5153 0.00023614 0.68079 0.00031198 1.1961 0.00054813 458.2634824762843 169.17 1.191 164.3 163.83 165.02 -4.873 84 34 3 0 0 0 8448 1 33370 33370 0.063987 0 1 103800000 + 5280 20161 3198 3201 5558 5558 0.05132970839383688 CRPVGEGVG 9 Unmodified _CRPVGEGVG_ 0 0 0 ENST00000560992.1_1_15:41851455-41853662:+|nuORF ENST00000560992.1_1_15:41851455-41853662:+|nuORF ENST00000560992.1_1_15:41851455-41853662:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22784423828125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 84.372 1 80.463 79.963 80.963 -3.9093 0 0 0 0.19687 1 16036 16036 8.1555 3.8719 1 5281 11296 3199 3202 5559 5559 -0.02387587702583005 CRQAKNQAY 9 Unmodified _CRQAKNQAY_ 0 0 0 ENSG00000142611|ENST00000270722|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;nc|ENSG00000142611|Q9HAZ2-4|PRDM16;PRDM16|p.A1235V|1|0.32|ENSG00000142611|chr1:3433684-3433684|C/T|missense_variant ENSG00000142611|ENST00000270722|PRDM16 ENSG00000142611|ENST00000270722|PRDM16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2630615234375 2 541.264007 1080.51346 NaN NaN NaN NaN NaN NaN NaN 76.396 1 72.762 72.262 73.262 -3.6337 0 0 0 0.23508 1 14544 14544 10.824 1.4408 1 5282 4431 3200 3203 5560 5560 -0.0235743986252146 CRREGVEK 8 Unmodified _CRREGVEK_ 0 0 0 ENSG00000127990|ENST00000648936|SGCE;nc|ENSG00000127990|O43556-4|SGCE ENSG00000127990|ENST00000648936|SGCE ENSG00000127990|ENST00000648936|SGCE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26031494140625 2 488.753276 975.491998 0.15094 7.3774E-05 1.0721 0.00052399 1.223 0.00059776 488.75283371121105 99.682 2.1222 95.55 94.538 96.66 -4.1326 173 60 5 0 0 0 0.49114 1 19669 19669 28.487 5.3384 1 7091900 5283 3501 3201 3204 5561 5561 0.0032717510878228495 CRRGLVSE 8 Unmodified _CRRGLVSE_ 0 0 0 REV__ENST00000571875.2_1_17:1958394-1960072:+|nuORF REV__ENST00000571875.2_1_17:1958394-1960072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.242431640625 2 460.242544 918.470534 NaN NaN NaN NaN NaN NaN NaN 132.85 1 128.05 127.55 128.55 -4.799 0 0 0 0.22647 1 25568 25568 0.25148 0 1 + 5284 23169 3202 3205 5562 5562 0.008037900800673015 CRRIHWDIWRE 11 Unmodified _CRRIHWDIWRE_ 0 0 0 TRIM23|p.N92Kfs*37|1|0.39|ENSG00000113595|chr5:65614188-65614189|-/T|frameshift_variant TRIM23|p.N92Kfs*37|1|0.39|ENSG00000113595|chr5:65614188-65614189|-/T|frameshift_variant TRIM23|p.N92Kfs*37|1|0.39|ENSG00000113595|chr5:65614188-65614189|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.39990234375 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 21.152 1 21.152 20.652 21.652 0 0 0 0 0.22632 1 3529 3529 0.00056442 0 1 5285 26518 3203 3206 5563 5563 0.016646096111117004 CRRIHWDIWRE 11 Unmodified _CRRIHWDIWRE_ 0 0 0 TRIM23|p.N92Kfs*37|1|0.39|ENSG00000113595|chr5:65614188-65614189|-/T|frameshift_variant TRIM23|p.N92Kfs*37|1|0.39|ENSG00000113595|chr5:65614188-65614189|-/T|frameshift_variant TRIM23|p.N92Kfs*37|1|0.39|ENSG00000113595|chr5:65614188-65614189|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.37890625 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 121.63 1 117.08 116.58 117.58 -4.5476 0 0 0 0.23698 1 23972 23972 2.2828 0.95324 1 5286 26518 3203 3206 5564 5564 0.016646096111117004 CRRQVEGAAP 10 Unmodified _CRRQVEGAAP_ 0 0 0 REV__MGRN1|p.H78Pfs*102|1|0.27|ENSG00000102858|chr16:4651981-4651982|-/C|frameshift_variant REV__MGRN1|p.H78Pfs*102|1|0.27|ENSG00000102858|chr16:4651981-4651982|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7759399414062 2 543.777282 1085.54001 NaN NaN NaN NaN NaN NaN NaN 58.208 1 55.297 54.797 55.797 -2.9105 0 0 0 2.8426 1 11177 11177 0.84494 0 1 + 5287 23854 3204 3207 5565 5565 0.0006624902880503214 CRRRYKFL 8 Unmodified _CRRRYKFL_ 0 0 0 ENSG00000171794|ENST00000304477|UTF1 ENSG00000171794|ENST00000304477|UTF1 ENSG00000171794|ENST00000304477|UTF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2194519042969 3 381.21856 1140.63385 0.17265 6.5817E-05 2.4158 0.00092094 2.5884 0.00098676 381.2194376572204 26.926 0.31216 25.291 25.037 25.349 -1.6347 13 8 2 0 0 0 8448 1 4485 4485 0.30703 0 1 2852600 5288 6170 3205 3208 5566 5566 0.06916012921760739 CRRWRYWEYWS 11 Unmodified _CRRWRYWEYWS_ 0 0 0 ENST00000299314.11_1_12:102159966-102161843:-|nuORF ENST00000299314.11_1_12:102159966-102161843:-|nuORF ENST00000299314.11_1_12:102159966-102161843:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 564.1338500976562 3 564.261376 1689.7623 NaN NaN NaN NaN NaN NaN NaN 170.9 1 170.9 170.4 171.4 0 0 0 0 0.22632 1 35169 35169 0 0 1 5289 8534 3206 3209 5567 5567 -0.05499096625817401 CRTVNGSG 8 Unmodified _CRTVNGSG_ 0 0 0 REV__ENSG00000169403|ENST00000373857|PTAFR REV__ENSG00000169403|ENST00000373857|PTAFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 397.205078125 2 397.184694 792.354836 NaN NaN NaN NaN NaN NaN NaN 72.413 1 69.102 68.602 69.602 -3.3107 0 0 0 0.21486 1 14113 14113 4.756 2.1785 1 + 5290 18100 3207 3210 5568 5568 -0.04964733770782459 CRVFGFHDL 9 Unmodified _CRVFGFHDL_ 0 0 0 ENST00000370272.8_1_1:93811487-93811679:+|nuORF ENST00000370272.8_1_1:93811487-93811679:+|nuORF ENST00000370272.8_1_1:93811487-93811679:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7666625976562 2 547.266019 1092.51748 0.1576 8.6248E-05 -0.54579 -0.00029869 -0.38819 -0.00021244 547.2659602069391 76.122 1.0536 72.707 72.368 73.422 -3.4151 47 29 2 0 0 0 0.46541 2 14851 14851;14907 21.747 8.2388 1 1795400 5291 9139 3208 3211 5569;5570 5569 -0.02507350368796324 CRVNSTPP 8 Unmodified _CRVNSTPP_ 0 0 0 BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant;ENSG00000011114|ENST00000334746|BTBD7;BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant;BTBD7|p.P760Lfs*61|1|0.45|ENSG00000011114|chr14:93246129-93246129|G/-|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22357177734375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 82.187 1 78.63 78.13 79.13 -3.557 0 0 0 0.23487 1 16060 16060 0.62683 0 1 5292 343 3209 3212 5571 5571 -0.023875877025943737 CSCTDCFF 8 Unmodified _CSCTDCFF_ 0 0 0 ENSG00000152455|ENST00000354919|SUV39H2;nc|ENSG00000152455|Q9H5I1-2|SUV39H2 ENSG00000152455|ENST00000354919|SUV39H2 ENSG00000152455|ENST00000354919|SUV39H2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 463.14923095703125 2 463.148074 924.281596 NaN NaN NaN NaN NaN NaN NaN 142.76 1 142.76 142.26 143.26 0 0 0 0 0.21486 1 28468 28468 0.79363 0 1 5293 4922 3210 3213 5572 5572 -0.1835736659993472 CSEDVDLPCTA 11 Unmodified _CSEDVDLPCTA_ 0 0 0 CD83|p.L185Sfs*10|1|0.36|ENSG00000112149|chr6:14135167-14135167|T/-|frameshift_variant;ENSG00000112149|ENST00000379153|CD83 CD83|p.L185Sfs*10|1|0.36|ENSG00000112149|chr6:14135167-14135167|T/-|frameshift_variant CD83|p.L185Sfs*10|1|0.36|ENSG00000112149|chr6:14135167-14135167|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3134155273438 2 576.731014 1151.44748 NaN NaN NaN NaN NaN NaN NaN 38.397 1 38.397 37.897 38.897 0 0 0 0 0.23379 1 7118 7118 5.2969 0.54088 1 5294 449 3211 3214 5573 5573 -0.12219061610221615 CSGCGHEY 8 Unmodified _CSGCGHEY_ 0 0 0 tr|U7T685|U7T685_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00148PE=3SV=1 tr|U7T685|U7T685_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00148PE=3SV=1 tr|U7T685|U7T685_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00148PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 428.14117431640625 2 428.141638 854.268723 NaN NaN NaN NaN NaN NaN NaN 8.409 1 7.7298 7.2298 8.2298 -0.67913 0 0 0 0.21486 1 870 870 0.69038 0 1 5295 26493 3212 3215 5574 5574 -0.16424061667817114 CSHQLQHRRGR 11 Unmodified _CSHQLQHRRGR_ 0 0 0 ENST00000577066.2_1_17:79006875-79007058:-|nuORF ENST00000577066.2_1_17:79006875-79007058:-|nuORF ENST00000577066.2_1_17:79006875-79007058:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 459.90545654296875 3 459.905816 1376.69562 NaN NaN NaN NaN NaN NaN NaN 9.9054 1 9.9054 9.4054 10.405 0 0 0 0 0.23698 1 1195 1195 0.073264 0.073264 1 5296 11465 3213 3216 5575 5575 0.0223371260294698 CSKSRTANL 9 Unmodified _CSKSRTANL_ 0 0 0 REV__KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant REV__KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2526550292969 2 490.253108 978.491664 NaN NaN NaN NaN NaN NaN NaN 108.46 1 104.03 103.53 104.53 -4.4269 0 0 0 0.22193 1 20815 20815 17.113 1.3447 1 + 5297 16916 3214 3217 5576 5576 0.0015575538891425822 CSLILFSNF 9 Unmodified _CSLILFSNF_ 0 0 0 ENST00000381652.3_1_9:5127188-5127269:+|nuORF ENST00000381652.3_1_9:5127188-5127269:+|nuORF ENST00000381652.3_1_9:5127188-5127269:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2666015625 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 111.92 1 107.5 107 108 -4.4231 0 0 0 0.1599 1 22055 22055 29.082 3.6823 1 5298 9332 3215 3218 5577 5577 -0.0038040417741740384 CSLTVREGP 9 Unmodified _CSLTVREGP_ 0 0 0 REV__nc|ENSG00000243063|A0A075B6H7|IGKV3-7 REV__nc|ENSG00000243063|A0A075B6H7|IGKV3-7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2406311035156 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 75.97 1 72.555 72.055 73.055 -3.4151 0 0 0 0.21065 1 14824 14824 20.454 0 1 + 5299 24290 3216 3219 5578 5578 -0.011950493596373235 CSLTVREGP 9 Unmodified _CSLTVREGP_ 0 0 0 REV__nc|ENSG00000243063|A0A075B6H7|IGKV3-7 REV__nc|ENSG00000243063|A0A075B6H7|IGKV3-7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24127197265625 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 76.109 1 72.475 71.975 72.975 -3.6337 0 0 0 0.22962 1 14482 14482 14.838 0 1 + 5300 24290 3216 3219 5579 5579 -0.011950493596373235 CSLTVREGP 9 Unmodified _CSLTVREGP_ 0 0 0 REV__nc|ENSG00000243063|A0A075B6H7|IGKV3-7 REV__nc|ENSG00000243063|A0A075B6H7|IGKV3-7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24078369140625 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 76.394 1 72.76 72.26 73.26 -3.6337 0 0 0 0.12288 1 14543 14543 34.102 0 1 + 5301 24290 3216 3219 5580 5580 -0.011950493596373235 CSNMFFVHKK 10 Unmodified _CSNMFFVHKK_ 0 0 0 REV__nc|ENSG00000143036|Q8N4M1-5|SLC44A3 REV__nc|ENSG00000143036|Q8N4M1-5|SLC44A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 620.8038940429688 2 620.801911 1239.58927 NaN NaN NaN NaN NaN NaN NaN 10.751 1 9.6848 9.1848 10.185 -1.0664 0 0 0 0.22588 1 1181 1181 0 0 1 + 5302 16697 3217 3220 5581 5581 -0.020941790065990062 CSNSCPQPQN 10 Unmodified _CSNSCPQPQN_ 0 0 0 nc|ENSG00000105371|Q14773-2|ICAM4;nc|ENSG00000105371|Q14773|ICAM4;nc|ENSG00000105371|Q14773-3|ICAM4 nc|ENSG00000105371|Q14773-2|ICAM4 nc|ENSG00000105371|Q14773-2|ICAM4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2684326171875 2 539.208041 1076.40153 0.25454 0.00013725 0.13735 7.4061E-05 0.39189 0.00021131 539.2079157818791 121.83 1.0314 121.83 121.47 122.51 0 111 29 5 0 0 0 0.52989 1 24078 24078 1.9064 1.641 1 45997000 5303 12271 3218 3221 5582 5582 -0.13361662001807417 CSPAAARPASR 11 Unmodified _CSPAAARPASR_ 0 0 0 REV__ENSG00000178605|ENST00000326153|GTPBP6 REV__ENSG00000178605|ENST00000326153|GTPBP6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.772216796875 2 543.777282 1085.54001 NaN NaN NaN NaN NaN NaN NaN 149.55 1 144.43 143.93 144.93 -5.1204 0 0 0 0.22914 1 28978 28978 8.9762 0.82072 1 + 5304 18614 3219 3222 5583 5583 0.0006624902880503214 CSPCDTNWRY 10 Unmodified _CSPCDTNWRY_ 0 0 0 nc|ENSG00000165682|Q9P126-2|CLEC1B;CLEC1B|p.C216Lfs*12|1|0.04|ENSG00000165682|chr12:9993186-9993187|-/TGGAGTTATTTTTA|frameshift_variant;ENSG00000165682|ENST00000298527|CLEC1B nc|ENSG00000165682|Q9P126-2|CLEC1B nc|ENSG00000165682|Q9P126-2|CLEC1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7622680664062 2 622.74479 1243.47503 NaN NaN NaN NaN NaN NaN NaN 66.16 1 62.877 62.377 63.377 -3.2832 0 0 0 2.8426 1 12450 12450 3.5927 3.1844 1 5305 576 3220 3223 5584 5584 -0.136971135593285 CSPLDEPVSP 10 Unmodified _CSPLDEPVSP_ 0 0 0 ENST00000583039.1_1_17:8790786-8791804:-|nuORF;nc|ENSG00000141506|Q8WYR1-2|PIK3R5;PIK3R5|p.W600Lfs*7|1|0.15|ENSG00000141506|chr17:8887202-8887203|-/A|frameshift_variant;ENST00000578515.5_1_17:8785060-8814811:-|nuORF;ENSG00000141506|ENST00000447110|PIK3R5 ENST00000583039.1_1_17:8790786-8791804:-|nuORF ENST00000583039.1_1_17:8790786-8791804:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6797485351562 2 522.239332 1042.46411 -0.21305 -0.00011126 -0.23501 -0.00012273 -0.44806 -0.00023399 522.2391850665786 60.67 0.75797 57.737 57.41 58.168 -2.9333 73 21 4 0 0 0 0.48672 1 11633 11633 25.399 6.1423 1 27216000 5306 4376 3221 3224 5585 5585 -0.055421926619601436 CSPSPCPLRY 10 Unmodified _CSPSPCPLRY_ 0 0 0 ENST00000261556.10_1_14:57046642-57051724:+|nuORF ENST00000261556.10_1_14:57046642-57051724:+|nuORF ENST00000261556.10_1_14:57046642-57051724:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21221923828125 3 374.840538 1121.49979 -0.18134 -6.7975E-05 0.83641 0.00031352 0.65506 0.00024554 374.84068778104324 63.519 0.16954 60.522 60.42 60.59 -2.9975 6 4 2 0 0 0 0.51803 1 12290 12290 0.26539 0 1 579680 5307 8298 3222 3225 5586 5586 -0.05610433685978933 CSQCGKAFTHY 11 Unmodified _CSQCGKAFTHY_ 0 0 0 ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460;ZNF460|p.Y476Mfs*57|1|0.28|ENSG00000197714|chr19:57291964-57291964|C/-|frameshift_variant ENSG00000197714|ENST00000360338|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7640380859375 2 622.762983 1243.51141 NaN NaN NaN NaN NaN NaN NaN 48.84 1 48.84 48.34 49.34 0 0 0 0 0.22632 1 9226 9226 1.4551 1.4419 1 5308 7392 3223 3226 5587 5587 -0.10060236662639 CSRHRYFYWRR 11 Unmodified _CSRHRYFYWRR_ 0 0 0 REV__ENST00000450775.2_1_16:725790-727700:+|nuORF REV__ENST00000450775.2_1_16:725790-727700:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3464965820312 2 815.402035 1628.78952 NaN NaN NaN NaN NaN NaN NaN 171.88 1 171.88 171.38 172.38 0 0 0 0 0.23698 1 35444 35444 0.30703 0 1 + 5309 14872 3224 3227 5588 5588 0.000274317052344486 CSSPALTA 8 Unmodified _CSSPALTA_ 0 0 0 REV__ENSG00000183072|ENST00000329198|NKX2-5 REV__ENSG00000183072|ENST00000329198|NKX2-5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.0948791503906 2 375.178546 748.34254 NaN NaN NaN NaN NaN NaN NaN 116.21 1 111.63 111.13 112.13 -4.5815 0 0 0 0.21486 1 22300 22300 5.2307 0 1 + 5310 18818 3225 3228 5589 5589 -0.04169770233852432 CSSVRWATR 9 Unmodified _CSSVRWATR_ 0 0 0 nc|ENSG00000092068|Q9UHI5-4|SLC7A8;ENSG00000092068|ENST00000316902|SLC7A8 nc|ENSG00000092068|Q9UHI5-4|SLC7A8 nc|ENSG00000092068|Q9UHI5-4|SLC7A8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2646484375 2 533.26655 1064.51855 NaN NaN NaN NaN NaN NaN NaN 170.51 1 170.51 170.01 171.01 0 0 0 0 0.23508 1 35062 35062 8.1555 0.8663 1 5311 1823 3226 3229 5590 5590 -0.011131359998898915 CSTRIRPS 8 Unmodified _CSTRIRPS_ 0 0 0 REV__ALDH4A1|p.A481Qfs*17|1|0.41|ENSG00000159423|chr1:18875401-18875401|C/-|frameshift_variant REV__ALDH4A1|p.A481Qfs*17|1|0.41|ENSG00000159423|chr1:18875401-18875401|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2405700683594 2 460.242544 918.470534 -0.11156 -5.1345E-05 -3.0063 -0.0013836 -3.1179 -0.001435 460.2399173802921 79.692 0.91512 75.887 75.406 76.321 -3.8048 36 25 3 0 0 0 8448 1 15194 15194 10.074 8.6189 1 3091600 + 5312 13007 3227 3230 5591 5591 0.008037900800559328 CSTTEDCCC 9 Unmodified _CSTTEDCCC_ 0 0 0 ENST00000493287.5_1_1:1337440-1337563:-|nuORF ENST00000493287.5_1_1:1337440-1337563:-|nuORF ENST00000493287.5_1_1:1337440-1337563:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 965.2529296875 1 964.251501 963.244224 0.39795 0.00038372 -0.97459 -0.00093975 -0.57664 -0.00055603 964.2525315987984 4.6356 0.98489 4.6356 4.0095 4.9944 0 46 27 2 0 0 0 0.83871 1 71 71 0 0 1 266640 5313 10546 3228 3231 5592 5592 -0.23886825927866084 CSTTEDCCC 9 Unmodified _CSTTEDCCC_ 0 0 0 ENST00000493287.5_1_1:1337440-1337563:-|nuORF ENST00000493287.5_1_1:1337440-1337563:-|nuORF ENST00000493287.5_1_1:1337440-1337563:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 965.2488403320312 1 964.251501 963.244224 0.39796 0.00038374 -1.2011 -0.0011582 -0.80317 -0.00077446 964.2522477605768 11.489 0.6572 11.489 11.133 11.79 0 31 18 2 0 0 0 0.67442 1 1517 1517 0 0 1 179210 5314 10546 3228 3231 5593 5593 -0.23886825927866084 CSVDKKVK 8 Unmodified _CSVDKKVK_ 0 0 0 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75799560546875 2 453.757495 905.500437 NaN NaN NaN NaN NaN NaN NaN 12.31 1 11.189 10.689 11.689 -1.1206 0 0 0 0.2396 1 1456 1456 0.30703 0.30703 1 5315 179 3229 3232 5594 5594 0.04390729025396922 CSWCWMQMCC 10 Unmodified _CSWCWMQMCC_ 0 0 0 ENST00000442692.2_1_11:68822646-68853210:+|nuORF ENST00000442692.2_1_11:68822646-68853210:+|nuORF ENST00000442692.2_1_11:68822646-68853210:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 640.7106323242188 2 640.696028 1279.3775 NaN NaN NaN NaN NaN NaN NaN 173.12 1 168.24 167.74 168.74 -4.881 0 0 0 2.8426 1 34399 34399 0 0 1 5316 9903 3230 3233 5595 5595 -0.251010013473433 CSYQVAYTDYD 11 Unmodified _CSYQVAYTDYD_ 0 0 0 REV__ENSG00000138207|ENST00000371464|RBP4 REV__ENSG00000138207|ENST00000371464|RBP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 664.261474609375 2 664.260993 1326.50743 NaN NaN NaN NaN NaN NaN NaN 179.25 1 174.46 173.96 174.96 -4.7898 0 0 0 0.22632 1 36677 36677 0.50596 0.46217 1 + 5317 16448 3231 3234 5596 5596 -0.142760476753665 CTCAACCDD 9 Unmodified _CTCAACCDD_ 0 0 0 DEAF1|p.F297Lfs*18|1|0.13|ENSG00000177030|chr11:681069-681069|A/-|frameshift_variant;nc|ENSG00000177030|O75398-4|DEAF1;DEAF1|p.A487Pfs*26|1|0.09|ENSG00000177030|chr11:674581-674581|A/-|frameshift_variant;nc|ENSG00000177030|O75398-3|DEAF1;ENSG00000177030|ENST00000382409|DEAF1 DEAF1|p.F297Lfs*18|1|0.13|ENSG00000177030|chr11:681069-681069|A/-|frameshift_variant DEAF1|p.F297Lfs*18|1|0.13|ENSG00000177030|chr11:681069-681069|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.02764892578125 3 302.081641 903.223095 NaN NaN NaN NaN NaN NaN NaN 55.236 1 55.236 54.736 55.736 0 0 0 0 0.23508 1 10541 10541 0 0 1 5318 809 3232 3235 5597 5597 -0.23238791236735779 CTCLRHWY 8 Unmodified _CTCLRHWY_ 0 0 0 REV__ENST00000418326.3_1_7:47853098-47859192:+|nuORF REV__ENST00000418326.3_1_7:47853098-47859192:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2745971679688 2 541.238947 1080.46334 NaN NaN NaN NaN NaN NaN NaN 64.831 1 61.784 61.284 62.284 -3.047 0 0 0 0.23366 1 12539 12539 1.7423 1.6194 1 + 5319 21483 3233 3236 5598 5598 -0.07367265792004218 CTEHDECI 8 Unmodified _CTEHDECI_ 0 0 0 nc|ENSG00000184613|Q99435-4|NELL2;ENSG00000184613|ENST00000429094|NELL2;nc|ENSG00000184613|Q99435-2|NELL2;nc|ENSG00000184613|Q99435-3|NELL2;ENST00000549668.1_1_12:44926343-45059345:-|nuORF;NELL2|p.C688Afs*90|1|0.39|ENSG00000184613|chr12:44522113-44522113|A/-|frameshift_variant nc|ENSG00000184613|Q99435-4|NELL2 nc|ENSG00000184613|Q99435-4|NELL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1857604980469 3 317.117849 948.331717 NaN NaN NaN NaN NaN NaN NaN 122.72 1 118.18 117.68 118.68 -4.5476 0 0 0 0.21486 1 24195 24195 1.8442 0.19162 1 5320 6925 3234 3237 5599 5599 -0.1445154067042722 CTEQNSFK 8 Unmodified _CTEQNSFK_ 0 0 0 REV__ENSG00000229937|ENST00000506618|PRPS1L1 REV__ENSG00000229937|ENST00000506618|PRPS1L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7287292480469 2 478.710742 955.406931 NaN NaN NaN NaN NaN NaN NaN 143.89 1 138.83 138.33 139.33 -5.0671 0 0 0 0.23312 1 27744 27744 6.2344 5.6075 1 + 5321 16926 3235 3238 5600 5600 -0.07255615147687422 CTGRPPHLPT 10 Unmodified _CTGRPPHLPT_ 0 0 0 REV__ENST00000590513.2_1_17:40705339-40705789:-|nuORF REV__ENST00000590513.2_1_17:40705339-40705789:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2119140625 3 360.186926 1077.53895 -0.33402 -0.00012031 0.24971 8.9944E-05 -0.084311 -3.0368E-05 360.18695966031413 19.04 0.2863 17.715 17.577 17.863 -1.3251 12 7 2 0 0 0 0.91149 1 2895 2895 5.4027 1.8062 1 757820 + 5322 23323 3236 3239 5601 5601 0.0032803465990127734 CTHGGRTYSP 10 Unmodified _CTHGGRTYSP_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant;MUC5B|p.S2205Qfs*54|1|0.2|ENSG00000117983|chr11:1243486-1243487|-/C|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.F1125Lfs*31|1|0.34|ENSG00000117983|chr11:1238947-1238948|TC/-|frameshift_variant;ENST00000525715.5_1_11:1244314-1260349:+|nuORF ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2005615234375 3 360.162669 1077.46618 -0.29119 -0.00010488 0.73176 0.00026355 0.44057 0.00015868 360.1629452468105 18.499 0.69483 18.499 18.266 18.961 0 30 19 2 0 0 0 0.90272 1 2937 2937 11.518 5.786 1 675510 5323 3010 3237 3240 5602 5602 -0.06945719133500461 CTHRTSEFT 9 Unmodified _CTHRTSEFT_ 0 0 0 REV__ENST00000389253.8_2_19:10883199-10886384:+|nuORF REV__ENST00000389253.8_2_19:10883199-10886384:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.279296875 2 541.240198 1080.46584 0.29652 0.00016049 -1.1815 -0.00063946 -0.88495 -0.00047897 541.7411212643956 37.784 0.17224 35.446 35.362 35.535 -2.3375 6 4 2 0 0 0 0.62843 1 6693 6693 0.40827 0.335 1 319860 + 5324 21192 3238 3241 5603 5603 -0.07117138853368488 CTKKKMKTL 9 Unmodified _CTKKKMKTL_ 0 0 0 ENSG00000137727|ENST00000683387|ARHGAP20;ARHGAP20|p.N289Qfs*34|1|0.38|ENSG00000137727|chr11:110606664-110606665|-/G|frameshift_variant;ARHGAP20|p.K754Rfs*8|1|0.42|ENSG00000137727|chr11:110580685-110580685|T/-|frameshift_variant ENSG00000137727|ENST00000683387|ARHGAP20 ENSG00000137727|ENST00000683387|ARHGAP20 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.9868469238281 3 360.880445 1079.61951 -0.6053 -0.00021844 0.82384 0.00029731 0.21853 7.8865E-05 360.8807791501255 14.889 0.20413 13.716 13.597 13.801 -1.173 10 5 3 0 0 0 0.88312 1 2037 2037 0.96228 0.96228 1 430610 5325 4101 3239 3242 5604 5604 0.0828817965862072 CTKKKMKTL 9 Unmodified _CTKKKMKTL_ 0 0 0 ENSG00000137727|ENST00000683387|ARHGAP20;ARHGAP20|p.N289Qfs*34|1|0.38|ENSG00000137727|chr11:110606664-110606665|-/G|frameshift_variant;ARHGAP20|p.K754Rfs*8|1|0.42|ENSG00000137727|chr11:110580685-110580685|T/-|frameshift_variant ENSG00000137727|ENST00000683387|ARHGAP20 ENSG00000137727|ENST00000683387|ARHGAP20 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 360.880445 1079.61951 -0.35835 -0.00012932 0.64465 0.00023264 0.28631 0.00010332 360.88066718569013 13.98 0.1745 13.98 13.898 14.073 0 0.16067 -0.00040643 NaN 0.96228 10 4 3 NaN NaN NaN NaN 0 NaN NaN 0 758240 5326 4101 3239 3242 0.0828817965862072 CTKLHVMCF 9 Unmodified _CTKLHVMCF_ 0 0 0 REV__nc|ENSG00000170579|O14490-7|DLGAP1 REV__nc|ENSG00000170579|O14490-7|DLGAP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.16973876953125 3 361.171231 1080.49186 NaN NaN NaN NaN NaN NaN NaN 20.732 1 19.347 18.847 19.847 -1.3847 0 0 0 0.23508 1 3228 3228 0.96228 0.0979 1 + 5327 24162 3240 3243 5605 5605 -0.045162842070794795 CTLHPIRGT 9 Unmodified _CTLHPIRGT_ 0 0 0 REV__nc|ENSG00000160867|P22455-2|FGFR4 REV__nc|ENSG00000160867|P22455-2|FGFR4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.21759033203125 3 333.179771 996.517485 NaN NaN NaN NaN NaN NaN NaN 111.31 1 111.31 110.81 111.81 0 0 0 0 0.23508 1 21895 21895 2.2828 0.63015 1 + 5328 24121 3241 3244 5606 5606 0.019086496312070267 CTPEGDYCH 9 Unmodified _CTPEGDYCH_ 0 0 0 REV__ENST00000545661.5_2_16:67679511-67679678:+|nuORF REV__ENST00000545661.5_2_16:67679511-67679678:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 513.679443359375 2 512.678585 1023.34262 0.20521 0.00010521 -0.43282 -0.0002219 -0.2276 -0.00011669 512.6776458184936 140.34 0.94386 140.34 139.85 140.79 0 89 26 4 0 0 0 0.39168 1 28017 28017 4.7159 1.1289 1 30761000 + 5329 22890 3242 3245 5607 5607 -0.16812138296143075 CTRGAATN 8 Unmodified _CTRGAATN_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 397.1975402832031 2 397.184694 792.354836 NaN NaN NaN NaN NaN NaN NaN 69.096 1 65.916 65.416 66.416 -3.1796 0 0 0 0.23107 1 13430 13430 0.12286 0 1 + 5330 15935 3243 3246 5608 5608 -0.04964733770782459 CTRGQGTA 8 Unmodified _CTRGQGTA_ 0 0 0 SLITRK5|p.H899Ifs*27|1|0.27|ENSG00000165300|chr13:87678079-87678079|C/-|frameshift_variant SLITRK5|p.H899Ifs*27|1|0.27|ENSG00000165300|chr13:87678079-87678079|C/-|frameshift_variant SLITRK5|p.H899Ifs*27|1|0.27|ENSG00000165300|chr13:87678079-87678079|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 397.2330322265625 2 397.184694 792.354836 NaN NaN NaN NaN NaN NaN NaN 62.32 1 59.358 58.858 59.858 -2.9614 0 0 0 0.21486 1 12024 12024 4.756 2.1785 1 5331 25695 3244 3247 5609 5609 -0.04964733770782459 CTRVAEQI 8 Unmodified _CTRVAEQI_ 0 0 0 REV__NOC4L|p.P381Lfs*103|1|0.35|ENSG00000184967|chr12:132151548-132151548|C/-|frameshift_variant REV__NOC4L|p.P381Lfs*103|1|0.35|ENSG00000184967|chr12:132151548-132151548|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2350158691406 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 131.5 1 126.64 126.14 127.14 -4.8527 0 0 0 0.21486 1 25253 25253 10.824 0.64053 1 + 5332 24371 3245 3248 5610 5610 -0.0031903201407885717 CTRVCRRWYNL 11 Unmodified _CTRVCRRWYNL_ 0 0 0 FBXL7|p.A138T|1|0.37|ENSG00000183580|chr5:15928174-15928174|G/A|missense_variant FBXL7|p.A138T|1|0.37|ENSG00000183580|chr5:15928174-15928174|G/A|missense_variant FBXL7|p.A138T|1|0.37|ENSG00000183580|chr5:15928174-15928174|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26629638671875 3 490.57994 1468.71799 -0.54837 -0.00026902 0.056349 2.7644E-05 -0.49202 -0.00024138 490.5799983275031 14.111 0.45685 12.997 12.875 13.331 -1.1142 42 12 6 0 0 0 0.66298 1 2134 2134 0.094841 0 1 27035000 5333 11803 3246 3249 5611 5611 0.00238175956383202 CTSSKAPR 8 Unmodified _CTSSKAPR_ 0 0 0 nc|ENSG00000170162|Q8N8G2-2|VGLL2;ENSG00000170162|ENST00000326274|VGLL2 nc|ENSG00000170162|Q8N8G2-2|VGLL2 nc|ENSG00000170162|Q8N8G2-2|VGLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2445068359375 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 13.472 1 13.472 12.972 13.972 0 0 0 0 0.23811 1 1947 1947 0.12286 0.11459 1 5334 6043 3247 3250 5612 5612 -0.012835877025963782 CTTQCCSPCCC 11 Unmodified _CTTQCCSPCCC_ 0 0 0 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3335571289062 2 576.159476 1150.3044 NaN NaN NaN NaN NaN NaN NaN 68.162 1 68.162 67.662 68.662 0 0 0 0 0.22632 1 13179 13179 0 0 1 + 5335 19569 3248 3251 5613 5613 -0.26474174860618405 CTTQCCSPCCC 11 Unmodified _CTTQCCSPCCC_ 0 0 0 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3253173828125 2 576.159476 1150.3044 NaN NaN NaN NaN NaN NaN NaN 71.197 1 71.197 70.697 71.697 0 0 0 0 0.22632 1 13791 13791 0 0 1 + 5336 19569 3248 3251 5614 5614 -0.26474174860618405 CTTQCCSPCCC 11 Unmodified _CTTQCCSPCCC_ 0 0 0 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3123779296875 2 576.159476 1150.3044 NaN NaN NaN NaN NaN NaN NaN 71.213 1 71.213 70.713 71.713 0 0 0 0 0.23698 1 13794 13794 0 0 1 + 5337 19569 3248 3251 5615 5615 -0.26474174860618405 CTTQCCSPCCC 11 Unmodified _CTTQCCSPCCC_ 0 0 0 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3301391601562 2 576.159476 1150.3044 NaN NaN NaN NaN NaN NaN NaN 91.524 1 87.599 87.099 88.099 -3.9251 0 0 0 0.22632 1 17916 17916 0 0 1 + 5338 19569 3248 3251 5616 5616 -0.26474174860618405 CTTQCCSPCCC 11 Unmodified _CTTQCCSPCCC_ 0 0 0 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3301391601562 2 576.159476 1150.3044 NaN NaN NaN NaN NaN NaN NaN 91.533 1 87.608 87.108 88.108 -3.9251 0 0 0 0.23698 1 17917 17917 0 0 1 + 5339 19569 3248 3251 5617 5617 -0.26474174860618405 CTTQCCSPCCC 11 Unmodified _CTTQCCSPCCC_ 0 0 0 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3110961914062 2 576.159476 1150.3044 NaN NaN NaN NaN NaN NaN NaN 165.42 1 160.63 160.13 161.13 -4.7898 0 0 0 0.23698 1 33128 33128 0 0 1 + 5340 19569 3248 3251 5618 5618 -0.26474174860618405 CTTQCCSPCCC 11 Unmodified _CTTQCCSPCCC_ 0 0 0 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3389892578125 2 576.159476 1150.3044 NaN NaN NaN NaN NaN NaN NaN 165.5 1 160.71 160.21 161.21 -4.7898 0 0 0 0.23698 1 33148 33148 0 0 1 + 5341 19569 3248 3251 5619 5619 -0.26474174860618405 CTTQCCSPCCC 11 Unmodified _CTTQCCSPCCC_ 0 0 0 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3311157226562 2 576.159476 1150.3044 NaN NaN NaN NaN NaN NaN NaN 103.06 1 98.741 98.241 99.241 -4.3208 0 0 0 0.23698 1 19734 19734 0 0 1 + 5342 19569 3248 3251 5620 5620 -0.26474174860618405 CTTQCCSPCCC 11 Unmodified _CTTQCCSPCCC_ 0 0 0 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 REV__ENSG00000204880|ENST00000333822|KRTAP4-8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3325805664062 2 576.159476 1150.3044 NaN NaN NaN NaN NaN NaN NaN 71.118 1 67.651 67.151 68.151 -3.467 0 0 0 0.22632 1 13475 13475 0 0 1 + 5343 19569 3248 3251 5621 5621 -0.26474174860618405 CVCADTVY 8 Unmodified _CVCADTVY_ 0 0 0 ENST00000483571.5_1_14:60582139-60592559:+|nuORF;ENSG00000126773|ENST00000406854|PCNX4 ENST00000483571.5_1_14:60582139-60592559:+|nuORF ENST00000483571.5_1_14:60582139-60592559:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2145690917969 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 76.585 1 72.862 72.362 73.362 -3.7227 0 0 0 0.21486 1 14505 14505 9.3474 2.0582 1 5344 3444 3249 3252 5622 5622 -0.10045147314099268 CVDTAISPYL 10 Unmodified _CVDTAISPYL_ 0 0 0 ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENST00000461347.5_1_2:232319904-232323320:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2777709960938 2 541.26535 1080.51615 0.75462 0.00040845 -4.3496 -0.0023543 -3.595 -0.0019459 541.7644174753015 108.73 0.17329 104.55 104.49 104.66 -4.1826 6 4 2 0 0 0 0.87854 1 20920 20920 13.906 9.5768 1 725230 5345 10069 3250 3253 5623 5623 -0.020890292482363293 CVECACAG 8 Unmodified _CVECACAG_ 0 0 0 ENST00000415030.6_1_11:118004671-118004854:-|nuORF ENST00000415030.6_1_11:118004671-118004854:-|nuORF ENST00000415030.6_1_11:118004671-118004854:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 378.1291198730469 2 378.129685 754.244816 NaN NaN NaN NaN NaN NaN NaN 179.7 1 174.79 174.29 175.29 -4.9114 0 0 0 0.21486 1 35859 35859 0.69038 0 1 5346 9608 3251 3254 5624 5624 -0.14213618425844743 CVGLLNIINK 10 Unmodified _CVGLLNIINK_ 0 0 0 REV__nc|ENSG00000160867|P22455-2|FGFR4 REV__nc|ENSG00000160867|P22455-2|FGFR4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7801513671875 2 543.820627 1085.6267 0.33881 0.00018425 -1.1342 -0.00061681 -0.79541 -0.00043256 543.8213444625303 146.61 0.16887 146.61 146.54 146.7 0 7 4 2 0 0 0 1.1102 1 29311 29311 0.20733 0 1 2313600 + 5347 24121 3252 3255 5625 5625 0.08731235530694903 CVGVGSFADPD 11 Unmodified _CVGVGSFADPD_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26220703125 2 533.729132 1065.44371 0.52749 0.00028153 0.034879 1.8616E-05 0.56236 0.00030015 534.230068268107 84.543 0.17157 80.633 80.492 80.664 -3.9093 5 4 2 0 0 0 0.85028 1 16048 16048 17.113 7.039 1 456630 5348 1581 3253 3256 5626 5626 -0.08639363321799465 CVHLIFLFF 9 Unmodified _CVHLIFLFF_ 0 0 0 ENST00000450114.6_1_11:9610449-9610605:+|nuORF ENST00000450114.6_1_11:9610449-9610605:+|nuORF ENST00000450114.6_1_11:9610449-9610605:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 380.2075500488281 3 380.208779 1137.60451 NaN NaN NaN NaN NaN NaN NaN 43.424 1 40.704 40.204 41.204 -2.7191 0 0 0 0.18489 1 8141 8141 17.113 16.455 1 5349 9970 3254 3257 5627 5627 0.04121055852920108 CVIMQKNGA 9 Unmodified _CVIMQKNGA_ 0 0 0 ENSG00000146425|ENST00000367089|DYNLT1 ENSG00000146425|ENST00000367089|DYNLT1 ENSG00000146425|ENST00000367089|DYNLT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77276611328125 2 482.241155 962.467757 NaN NaN NaN NaN NaN NaN NaN 114.85 1 110.29 109.79 110.79 -4.555 0 0 0 0.18489 1 22050 22050 17.113 13.526 1 5350 4654 3255 3258 5628 5628 -0.014978013691120395 CVLETTIWTH 10 Unmodified _CVLETTIWTH_ 0 0 0 ENSG00000175711|ENST00000320865|B3GNTL1 ENSG00000175711|ENST00000320865|B3GNTL1 ENSG00000175711|ENST00000320865|B3GNTL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 401.3531494140625 3 401.533991 1201.58014 -0.13945 -5.5994E-05 -0.81187 -0.00032599 -0.95132 -0.00038199 401.53363924503145 14.267 0.4211 14.267 14.036 14.457 0 29 11 4 0 0 0 0.72703 1 2111 2111 8.4443 0.49891 1 13298000 5351 6429 3256 3259 5629 5629 -0.0125824909127914 CVLETTIWTH 10 Unmodified _CVLETTIWTH_ 0 0 0 ENSG00000175711|ENST00000320865|B3GNTL1 ENSG00000175711|ENST00000320865|B3GNTL1 ENSG00000175711|ENST00000320865|B3GNTL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 401.533991 1201.58014 -0.81719 -0.00032813 -0.30916 -0.00012414 -1.1264 -0.00045227 401.5337974081076 15.121 0.4222 14.007 13.744 14.167 -1.1142 -0.066307 0.0002041 NaN 8.4443 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 5556600 5352 6429 3256 3259 -0.0125824909127914 CVLETTIWTH 10 Unmodified _CVLETTIWTH_ 0 0 0 ENSG00000175711|ENST00000320865|B3GNTL1 ENSG00000175711|ENST00000320865|B3GNTL1 ENSG00000175711|ENST00000320865|B3GNTL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 401.533991 1201.58014 -0.60495 -0.00024291 -0.18191 -7.3042E-05 -0.78686 -0.00031595 401.5338433783716 15.168 0.27191 13.946 13.861 14.133 -1.2219 -0.12769 0.00035739 NaN 8.4443 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2071300 5353 6429 3256 3259 -0.0125824909127914 CVLPSITTE 9 Unmodified _CVLPSITTE_ 0 0 0 PHB|p.R117C|1|0.14|ENSG00000167085|chr17:49409375-49409375|G/A|missense_variant PHB|p.R117C|1|0.14|ENSG00000167085|chr17:49409375-49409375|G/A|missense_variant PHB|p.R117C|1|0.14|ENSG00000167085|chr17:49409375-49409375|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2418518066406 2 481.746793 961.479033 0.18178 8.7573E-05 -0.65283 -0.0003145 -0.47105 -0.00022693 481.7464599465893 124.13 0.42518 119.54 119.23 119.66 -4.5926 17 11 2 0 0 0 0.62649 1 23864 23864 1.2148 0 1 1063100 5354 12780 3257 3260 5630 5630 -0.003247007939876312 CVPDGYDECED 11 Unmodified _CVPDGYDECED_ 0 0 0 REV__ENSG00000119681|ENST00000261978|LTBP2 REV__ENSG00000119681|ENST00000261978|LTBP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7578735351562 2 622.707736 1243.40092 NaN NaN NaN NaN NaN NaN NaN 150.48 1 150.48 149.98 150.98 0 0 0 0 0.22632 1 30129 30129 0.00056442 0.00056442 1 + 5355 15588 3258 3261 5631 5631 -0.21104546232186294 CVSTGGRPP 9 Unmodified _CVSTGGRPP_ 0 0 0 nc|ENSG00000073008|P15151-3|PVR;nc|ENSG00000073008|P15151-2|PVR;nc|ENSG00000073008|P15151-4|PVR;ENST00000187830.2_1_19:45147391-45165075:+|nuORF;nc|ENSG00000073008|P15151|PVR;ENSG00000073008|ENST00000425690|PVR nc|ENSG00000073008|P15151-3|PVR nc|ENSG00000073008|P15151-3|PVR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2286071777344 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 110.79 1 110.79 110.29 111.29 0 0 0 0 0.19684 1 21790 21790 0.12781 0 1 5356 1479 3259 3262 5632 5632 -0.023875877025943737 CVSTGGRPP 9 Unmodified _CVSTGGRPP_ 0 0 0 nc|ENSG00000073008|P15151-3|PVR;nc|ENSG00000073008|P15151-2|PVR;nc|ENSG00000073008|P15151-4|PVR;ENST00000187830.2_1_19:45147391-45165075:+|nuORF;nc|ENSG00000073008|P15151|PVR;ENSG00000073008|ENST00000425690|PVR nc|ENSG00000073008|P15151-3|PVR nc|ENSG00000073008|P15151-3|PVR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2159423828125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 110.9 1 110.9 110.4 111.4 0 0 0 0 0.23508 1 21814 21814 7.9102 0.62092 1 5357 1479 3259 3262 5633 5633 -0.023875877025943737 CVSTGGRPP 9 Unmodified _CVSTGGRPP_ 0 0 0 nc|ENSG00000073008|P15151-3|PVR;nc|ENSG00000073008|P15151-2|PVR;nc|ENSG00000073008|P15151-4|PVR;ENST00000187830.2_1_19:45147391-45165075:+|nuORF;nc|ENSG00000073008|P15151|PVR;ENSG00000073008|ENST00000425690|PVR nc|ENSG00000073008|P15151-3|PVR nc|ENSG00000073008|P15151-3|PVR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22796630859375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 115.62 1 111.3 110.8 111.8 -4.3136 0 0 0 0.19684 1 22257 22257 0.12781 0.063827 1 5358 1479 3259 3262 5634 5634 -0.023875877025943737 CVTIPADVEIM 11 Unmodified _CVTIPADVEIM_ 0 0 0 REV__nc|ENSG00000120910|P48454-2|PPP3CC REV__nc|ENSG00000120910|P48454-2|PPP3CC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 397.2080993652344 3 397.53137 1189.57228 -0.025803 -1.0257E-05 -0.35482 -0.00014105 -0.38062 -0.00015131 397.53117925910516 40.31 0.85035 37.77 37.498 38.348 -2.5398 54 23 3 0 0 0 0.88957 1 7179 7179 3.0723 3.0689 1 6893000 + 5359 15638 3260 3263 5635 5635 -0.014921444030733255 CVTIPADVEIM 11 Unmodified _CVTIPADVEIM_ 0 0 0 REV__nc|ENSG00000120910|P48454-2|PPP3CC REV__nc|ENSG00000120910|P48454-2|PPP3CC MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 397.53137 1189.57228 0.044929 1.7861E-05 -0.19306 -7.6747E-05 -0.14813 -5.8886E-05 397.53124613987086 37.909 0.77626 37.909 37.683 38.459 0 0.069051 -0.00014152 NaN 3.0723 55 21 3 NaN NaN NaN NaN 0 NaN NaN 0 17980000 + 5360 15638 3260 3263 -0.014921444030733255 CVTIPADVEIM 11 Unmodified _CVTIPADVEIM_ 0 0 0 REV__nc|ENSG00000120910|P48454-2|PPP3CC REV__nc|ENSG00000120910|P48454-2|PPP3CC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 397.53137 1189.57228 -0.42718 -0.00016982 0.10388 4.1294E-05 -0.3233 -0.00012852 397.5313650016721 40.504 0.92557 37.869 37.471 38.396 -2.6348 0.029705 0.0002126 NaN 3.0723 59 25 3 NaN NaN NaN NaN 0 NaN NaN 0 9500600 + 5361 15638 3260 3263 -0.014921444030733255 CVTIPADVEIM 11 Unmodified _CVTIPADVEIM_ 0 0 0 REV__nc|ENSG00000120910|P48454-2|PPP3CC REV__nc|ENSG00000120910|P48454-2|PPP3CC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 397.53137 1189.57228 -0.46134 -0.0001834 0.13337 5.3018E-05 -0.32797 -0.00013038 397.5314172860382 40.3 0.81012 37.81 37.509 38.319 -2.4896 -0.029177 0.00024777 NaN 3.0723 43 22 2 NaN NaN NaN NaN 0 NaN NaN 0 5165300 + 5362 15638 3260 3263 -0.014921444030733255 CVTWLYKLTRW 11 Unmodified _CVTWLYKLTRW_ 0 0 0 REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27178955078125 3 490.263835 1467.76968 NaN NaN NaN NaN NaN NaN NaN 90.428 1 90.428 89.928 90.928 0 0 0 0 0.22632 1 17663 17663 0.00056442 0 1 + 5363 17246 3261 3264 5636 5636 0.054502429218700854 CVTWLYKLTRW 11 Unmodified _CVTWLYKLTRW_ 0 0 0 REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26312255859375 3 490.263835 1467.76968 NaN NaN NaN NaN NaN NaN NaN 152.51 1 152.51 152.01 153.01 0 0 0 0 0.22632 1 30547 30547 0.026206 0 1 + 5364 17246 3261 3264 5637 5637 0.054502429218700854 CVTWLYKLTRW 11 Unmodified _CVTWLYKLTRW_ 0 0 0 REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2645568847656 3 490.263835 1467.76968 NaN NaN NaN NaN NaN NaN NaN 41.331 1 38.791 38.291 39.291 -2.5398 0 0 0 0.22632 1 7423 7423 0.03141 0 1 + 5365 17246 3261 3264 5638 5638 0.054502429218700854 CVTWLYKLTRW 11 Unmodified _CVTWLYKLTRW_ 0 0 0 REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2645263671875 3 490.263835 1467.76968 NaN NaN NaN NaN NaN NaN NaN 104.21 1 100.15 99.655 100.65 -4.0543 0 0 0 0.22632 1 20039 20039 0.0059557 0 1 + 5366 17246 3261 3264 5639 5639 0.054502429218700854 CVVDKGILD 9 Unmodified _CVVDKGILD_ 0 0 0 REV__nc|ENSG00000119121|Q9BX84-6|TRPM6 REV__nc|ENSG00000119121|Q9BX84-6|TRPM6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25408935546875 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 78.364 1 74.705 74.205 75.205 -3.6588 0 0 0 0.21469 1 14926 14926 19.257 2.1441 1 + 5367 15569 3262 3265 5640 5640 0.013190054429401243 CVYMEAHTQ 9 Unmodified _CVYMEAHTQ_ 0 0 0 ENST00000551214.5_1_12:63114458-63114617:-|nuORF ENST00000551214.5_1_12:63114458-63114617:-|nuORF ENST00000551214.5_1_12:63114458-63114617:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.2039794921875 3 361.152893 1080.43685 NaN NaN NaN NaN NaN NaN NaN 92.285 1 88.19 87.69 88.69 -4.0946 0 0 0 0.19691 1 17581 17581 0.12781 0.098532 1 5368 11182 3263 3266 5641 5641 -0.10014999473992248 CVYQQASLWF 10 Unmodified _CVYQQASLWF_ 0 0 0 ENST00000481285.5_1_X:118146936-118151650:+|nuORF;nc|ENSG00000175556|Q496Y0-2|LONRF3;ENSG00000175556|ENST00000371628|LONRF3 ENST00000481285.5_1_X:118146936-118151650:+|nuORF ENST00000481285.5_1_X:118146936-118151650:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7755126953125 2 622.792066 1243.56958 NaN NaN NaN NaN NaN NaN NaN 148.44 1 143.74 143.24 144.24 -4.7095 0 0 0 2.8426 1 29477 29477 0.063865 0.037659 1 5369 6420 3264 3267 5642 5642 -0.04246231745719342 CWCCPCCS 8 Unmodified _CWCCPCCS_ 0 0 0 ENSG00000178750|ENST00000315099|STX19 ENSG00000178750|ENST00000315099|STX19 ENSG00000178750|ENST00000315099|STX19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.0167541503906 3 302.080807 903.220592 NaN NaN NaN NaN NaN NaN NaN 54.061 1 54.061 53.561 54.561 0 0 0 0 0.21486 1 10306 10306 0 0 1 5370 6591 3265 3268 5643 5643 -0.2348891817537151 CWCHCGPKF 9 Unmodified _CWCHCGPKF_ 0 0 0 BRINP3|p.E623*|1|0.15|ENSG00000162670|chr1:190098452-190098453|-/A|frameshift_variant;nc|ENSG00000162670|Q76B58-2|BRINP3;ENSG00000162670|ENST00000367462|BRINP3 BRINP3|p.E623*|1|0.15|ENSG00000162670|chr1:190098452-190098453|-/A|frameshift_variant BRINP3|p.E623*|1|0.15|ENSG00000162670|chr1:190098452-190098453|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.216796875 3 360.811926 1079.41395 -0.16895 -6.0959E-05 0.471 0.00016994 0.30205 0.00010898 360.8119882615852 84.702 0.59981 84.702 84.416 85.015 0 26 16 2 0 0 0 0.88278 1 16556 16556 1.0715 0.8646 1 2281100 5371 336 3266 3269 5644 5644 -0.12258297072457935 CWDSMSDL 8 Unmodified _CWDSMSDL_ 0 0 0 REV__nc|ENSG00000076043|Q9Y3B8-2|REXO2 REV__nc|ENSG00000076043|Q9Y3B8-2|REXO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7314147949219 2 478.678053 955.341554 0.079226 3.7924E-05 -0.84469 -0.00040434 -0.76547 -0.00036641 478.6789401158795 58.748 0.73949 55.496 55.1 55.839 -3.2517 41 20 3 0 0 0 0.99494 1 10851 10851 4.756 0.81161 1 1307900 + 5372 14343 3267 3270 5645 5645 -0.13790352665034789 CWEAFRAP 8 Unmodified _CWEAFRAP_ 0 0 0 ENST00000467101.5_1_20:60776216-60776357:+|nuORF ENST00000467101.5_1_20:60776216-60776357:+|nuORF ENST00000467101.5_1_20:60776216-60776357:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.264892578125 2 490.226362 978.438172 0.17177 8.4204E-05 2.7544 0.0013503 2.9262 0.0014345 490.2279716554928 33.267 0.23808 31.052 30.944 31.182 -2.2158 9 6 2 0 0 0 8448 1 5781 5781 0.62683 0.61855 1 342300 5373 10143 3268 3271 5646 5646 -0.05190997322938529 CWHFYDKC 8 Unmodified _CWHFYDKC_ 0 0 0 REV__ENSG00000145536|ENST00000274181|ADAMTS16 REV__ENSG00000145536|ENST00000274181|ADAMTS16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 551.2171020507812 2 551.21768 1100.42081 NaN NaN NaN NaN NaN NaN NaN 5.9338 1 5.9338 5.4338 6.4338 0 0 0 0 0.21486 1 383 383 0.79363 0 1 + 5374 16839 3269 3272 5647 5647 -0.1253866092026783 CWKRKREWWDE 11 Unmodified _CWKRKREWWDE_ 0 0 0 nc|ENSG00000205482|P0DV79|SPDYE18;ENSG00000185040|ENST00000633306|SPDYE16;ENSG00000230358|ENST00000424157|SPDYE21 nc|ENSG00000205482|P0DV79|SPDYE18;ENSG00000230358|ENST00000424157|SPDYE21 ENSG00000230358|ENST00000424157|SPDYE21 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3859252929688 2 811.388259 1620.76197 NaN NaN NaN NaN NaN NaN NaN 150.68 1 150.68 150.18 151.18 0 0 0 0 0.23698 1 30170 30170 0.26902 0.26902 1 5375 6956;7805 3270 3273 5648 5648 -0.023585163456573355 CWKRKREWWDE 11 Unmodified _CWKRKREWWDE_ 0 0 0 nc|ENSG00000205482|P0DV79|SPDYE18;ENSG00000185040|ENST00000633306|SPDYE16;ENSG00000230358|ENST00000424157|SPDYE21 nc|ENSG00000205482|P0DV79|SPDYE18;ENSG00000230358|ENST00000424157|SPDYE21 ENSG00000230358|ENST00000424157|SPDYE21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.264892578125 3 541.261265 1620.76197 NaN NaN NaN NaN NaN NaN NaN 113.1 1 108.83 108.33 109.33 -4.2725 0 0 0 0.22632 1 21782 21782 0.026206 0 1 5376 6956;7805 3270 3273 5649 5649 -0.023585163456573355 CWKRKREWWDE 11 Unmodified _CWKRKREWWDE_ 0 0 0 nc|ENSG00000205482|P0DV79|SPDYE18;ENSG00000185040|ENST00000633306|SPDYE16;ENSG00000230358|ENST00000424157|SPDYE21 nc|ENSG00000205482|P0DV79|SPDYE18;ENSG00000230358|ENST00000424157|SPDYE21 ENSG00000230358|ENST00000424157|SPDYE21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.35498046875 2 811.388259 1620.76197 NaN NaN NaN NaN NaN NaN NaN 172.15 1 167.27 166.77 167.77 -4.881 0 0 0 0.23698 1 34150 34150 1.0715 0.76443 1 5377 6956;7805 3270 3273 5650 5650 -0.023585163456573355 CWVREMGY 8 Unmodified _CWVREMGY_ 0 0 0 REV__nc|ENSG00000184432|P35606-2|COPB2 REV__nc|ENSG00000184432|P35606-2|COPB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2698364257812 2 522.225505 1042.43646 0.95067 0.00049646 1.1174 0.00058355 2.0681 0.00108 522.2260700587259 25.527 0.4905 23.878 23.649 24.14 -1.6482 21 13 2 0 0 0 0.37918 1 4492 4492 44.407 26.272 1 3337600 + 5378 18896 3271 3274 5651 5651 -0.0830637440319606 CWWECCVH 8 Unmodified _CWWECCVH_ 0 0 0 ENST00000509294.1_1_5:470082-471349:+|nuORF;ENST00000515601.6_1_5:471214-471349:+|nuORF ENST00000509294.1_1_5:470082-471349:+|nuORF ENST00000509294.1_1_5:470082-471349:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 532.8619995117188 2 533.190608 1064.36666 NaN NaN NaN NaN NaN NaN NaN 8.6091 1 7.8149 7.3149 8.3149 -0.79424 0 0 0 0.2396 1 911 911 0.12286 0 1 5379 10728 3272 3275 5652 5652 -0.16294576343443623 CWYFIFYKWTI 11 Unmodified _CWYFIFYKWTI_ 0 0 0 ENST00000378308.6_2_X:40945184-40982842:+|nuORF ENST00000378308.6_2_X:40945184-40982842:+|nuORF ENST00000378308.6_2_X:40945184-40982842:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.38427734375 2 785.383591 1568.75263 NaN NaN NaN NaN NaN NaN NaN 51.27 1 48.219 47.719 48.719 -3.0517 0 0 0 0.23698 1 9443 9443 0.35063 0 1 5380 9279 3273 3276 5653 5653 -0.008996776839012455 CYAVMALC 8 Unmodified _CYAVMALC_ 0 0 0 REV__LYNX1|p.P40L|1|0.23|ENSG00000180155|chr8:142775628-142775628|G/A|missense_variant REV__LYNX1|p.P40L|1|0.23|ENSG00000180155|chr8:142775628-142775628|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2164001464844 2 437.187003 872.359452 NaN NaN NaN NaN NaN NaN NaN 178.29 1 178.29 177.79 178.79 0 0 0 0 0.21486 1 36935 36935 2.8892 2.0956 1 + 5381 23827 3274 3277 5654 5654 -0.08183308943887369 CYCCGESG 8 Unmodified _CYCCGESG_ 0 0 0 ENSG00000187969|ENST00000339534|ZCCHC13 ENSG00000187969|ENST00000339534|ZCCHC13 ENSG00000187969|ENST00000339534|ZCCHC13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.1173400878906 2 411.116774 820.218996 NaN NaN NaN NaN NaN NaN NaN 138.79 1 133.94 133.44 134.44 -4.8492 0 0 0 0.21486 1 26752 26752 0.79363 0.79363 1 5382 7139 3275 3278 5655 5655 -0.19830512668113442 CYCCSCCCCC 10 Unmodified _CYCCSCCCCC_ 0 0 0 REV__CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant REV__CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.2492065429688 2 547.096975 1092.1794 NaN NaN NaN NaN NaN NaN NaN 167.18 1 162.29 161.79 162.79 -4.8916 0 0 0 0.22588 1 32843 32843 0 0 1 + 5383 13590 3276 3279 5656 5656 -0.3630050659303379 CYCHTCSD 8 Unmodified _CYCHTCSD_ 0 0 0 REV__CRIM1|p.P856Lfs*67|1|0.19|ENSG00000150938|chr2:36537485-36537485|C/-|frameshift_variant REV__CRIM1|p.P856Lfs*67|1|0.19|ENSG00000150938|chr2:36537485-36537485|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 466.13934326171875 2 466.140781 930.267008 NaN NaN NaN NaN NaN NaN NaN 6.4344 1 5.8082 5.3082 6.3082 -0.62626 0 0 0 0.21486 1 479 479 0 0 1 + 5384 13583 3277 3280 5657 5657 -0.20091438748090695 CYDDDDSGNEE 11 Unmodified _CYDDDDSGNEE_ 0 0 0 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7710571289062 2 631.193504 1260.37246 1.0576 0.00066755 2.9829 0.0018828 4.0404 0.0025503 631.6965338561446 150.71 0.1073 145.98 145.89 146 -4.7323 4 2 2 0 0 0 0.8912 1 29932 29932 0 0 1 1484800 5385 2420 3278 3281 5658 5658 -0.24731572607765884 CYDHDGSG 8 Unmodified _CYDHDGSG_ 0 0 0 REV__nc|ENSG00000148840|Q5VV67-2|PPRC1 REV__nc|ENSG00000148840|Q5VV67-2|PPRC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 427.1415100097656 2 427.142692 852.270831 NaN NaN NaN NaN NaN NaN NaN 150.43 1 150.43 149.93 150.93 0 0 0 0 0.21486 1 30120 30120 0.69038 0.088878 1 + 5386 16990 3279 3282 5659 5659 -0.16121309658342398 CYEHQHVYT 9 Unmodified _CYEHQHVYT_ 0 0 0 DYRK2|p.R378H|1|0.39|ENSG00000127334|chr12:67658040-67658040|G/A|missense_variant DYRK2|p.R378H|1|0.39|ENSG00000127334|chr12:67658040-67658040|G/A|missense_variant DYRK2|p.R378H|1|0.39|ENSG00000127334|chr12:67658040-67658040|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2498168945312 2 590.248023 1178.48149 NaN NaN NaN NaN NaN NaN NaN 102.8 1 98.618 98.118 99.118 -4.1861 0 0 0 0.23508 1 20208 20208 11.64 4.9171 1 5387 902 3280 3283 5660 5660 -0.10060852336323478 CYFCCCLC 8 Unmodified _CYFCCCLC_ 0 0 0 ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72222900390625 2 479.143423 956.272294 NaN NaN NaN NaN NaN NaN NaN 139.27 1 134.63 134.13 135.13 -4.6439 0 0 0 0.21486 1 27496 27496 2.8892 2.0956 1 5388 4709 3281 3284 5661 5661 -0.20759174481486298 CYFMRYWILKF 11 Unmodified _CYFMRYWILKF_ 0 0 0 RASGRP3|p.N237Ifs*5|1|0.36|ENSG00000152689|chr2:33524447-33524447|A/-|frameshift_variant;nc|ENSG00000152689|Q8IV61-2|RASGRP3;ENSG00000152689|ENST00000403687|RASGRP3 RASGRP3|p.N237Ifs*5|1|0.36|ENSG00000152689|chr2:33524447-33524447|A/-|frameshift_variant RASGRP3|p.N237Ifs*5|1|0.36|ENSG00000152689|chr2:33524447-33524447|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3929443359375 2 785.390893 1568.76723 NaN NaN NaN NaN NaN NaN NaN 151.93 1 146.69 146.19 147.19 -5.2365 0 0 0 0.22632 1 29452 29452 0.026206 0 1 5389 4937 3282 3285 5662 5662 0.0056007119260357285 CYGDNDEF 8 Unmodified _CYGDNDEF_ 0 0 0 ACAN|p.K224N|1|0.09|ENSG00000157766|chr15:88841782-88841782|G/T|missense_variant ACAN|p.K224N|1|0.09|ENSG00000157766|chr15:88841782-88841782|G/T|missense_variant ACAN|p.K224N|1|0.09|ENSG00000157766|chr15:88841782-88841782|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7838439941406 2 481.663457 961.312362 NaN NaN NaN NaN NaN NaN NaN 142.58 1 142.58 142.08 143.08 0 0 0 0 0.21486 1 28428 28428 2.8892 0.31174 1 5390 29 3283 3286 5663 5663 -0.16984173689684212 CYGYCCKRLA 10 Unmodified _CYGYCCKRLA_ 0 0 0 REV__ENSG00000116032|ENST00000234389|GRIN3B REV__ENSG00000116032|ENST00000234389|GRIN3B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2603149414062 2 590.259022 1178.50349 NaN NaN NaN NaN NaN NaN NaN 133.44 1 128.62 128.12 129.12 -4.8175 0 0 0 2.8426 1 25682 25682 3.8763 0 1 + 5391 15463 3284 3287 5664 5664 -0.0786208718375292 CYISALRIHQR 11 Unmodified _CYISALRIHQR_ 0 0 0 ENST00000585568.5_1_19:44513139-44515613:+|nuORF;ZNF224|p.K426Nfs*47|1|0.38|ENSG00000267680|chr19:44107434-44107434|A/-|frameshift_variant;ENSG00000159882|ENST00000429154|ZNF230;ENST00000591551.1_1_19:44610541-44612434:+|nuORF;ENSG00000267680|ENST00000693561|ZNF224 ENST00000585568.5_1_19:44513139-44515613:+|nuORF ENST00000585568.5_1_19:44513139-44515613:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.87841796875 3 453.915318 1358.72412 NaN NaN NaN NaN NaN NaN NaN 10.685 1 9.7811 9.2811 10.281 -0.90401 0 0 0 0.23698 1 1358 1358 0.094841 0 1 5392 5221 3285 3288 5665 5665 0.05911017459516188 CYLGQLQQENL 11 Unmodified _CYLGQLQQENL_ 0 0 0 REV__NACC1|p.R24Q|1|0.26|ENSG00000160877|chr19:13135278-13135278|G/A|missense_variant REV__NACC1|p.R24Q|1|0.26|ENSG00000160877|chr19:13135278-13135278|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2160339355469 3 436.879939 1307.61799 0.13079 5.7141E-05 1.1836 0.00051707 1.3143 0.00057421 437.21579934209853 114.67 0.28465 110.11 110.01 110.29 -4.555 10 7 2 0 0 0 0.79196 1 21998 21998 4.7159 1.8726 1 463600 + 5393 23915 3286 3289 5666 5666 -0.023517828964486398 CYLGQLQQENL 11 Unmodified _CYLGQLQQENL_ 0 0 0 REV__NACC1|p.R24Q|1|0.26|ENSG00000160877|chr19:13135278-13135278|G/A|missense_variant REV__NACC1|p.R24Q|1|0.26|ENSG00000160877|chr19:13135278-13135278|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 436.879939 1307.61799 0.13079 5.7141E-05 1.1836 0.00051707 1.3143 0.00057421 437.21579934209853 114.67 0.28465 110.11 110.01 110.29 -4.555 0 0 NaN 4.7159 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 463600 + 5394 23915 3286 3289 -0.023517828964486398 CYLLCCAMY 9 Unmodified _CYLLCCAMY_ 0 0 0 REV__ENST00000442868.1_1_1:202822165-202825009:-|nuORF REV__ENST00000442868.1_1_1:202822165-202825009:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2691040039062 2 541.712527 1081.4105 0.077304 4.1877E-05 -1.9547 -0.0010589 -1.8774 -0.001017 542.2129230058931 131.15 0.20383 126.31 126.24 126.44 -4.8355 6 5 2 0 0 0 0.60888 1 25208 25208 2.6312 0 1 845510 + 5395 21723 3287 3290 5667 5667 -0.12694727961343233 CYLYPYYPY 9 Unmodified _CYLYPYYPY_ 0 0 0 REV__nc|ENSG00000167034|Q99801-3|NKX3-1 REV__nc|ENSG00000167034|Q99801-3|NKX3-1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.771240234375 2 622.770268 1243.52598 NaN NaN NaN NaN NaN NaN NaN 40.787 1 38.248 37.748 38.748 -2.5398 0 0 0 0.23508 1 7314 7314 2.3027 0 1 + 5396 17896 3288 3291 5668 5668 -0.0860384124284792 CYMVTRRERT 10 Unmodified _CYMVTRRERT_ 0 0 0 ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;JADE2|p.P642Hfs*26|1|0.27|ENSG00000043143|chr5:134578865-134578865|G/-|frameshift_variant;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2 ENST00000470876.1_1_5:133900168-133909634:+|nuORF ENST00000470876.1_1_5:133900168-133909634:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 438.8849792480469 3 438.88503 1313.63326 NaN NaN NaN NaN NaN NaN NaN 11.289 1 10.385 9.8848 10.885 -0.90401 0 0 0 0.22588 1 1486 1486 0.15932 0 1 5397 10204 3289 3292 5669 5669 -0.011011945802465561 CYNYRIRV 8 Unmodified _CYNYRIRV_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant;MUC5B|p.S2205Qfs*54|1|0.2|ENSG00000117983|chr11:1243486-1243487|-/C|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.791015625 2 543.779293 1085.54403 NaN NaN NaN NaN NaN NaN NaN 155.81 1 150.56 150.06 151.06 -5.2526 0 0 0 0.23782 1 30216 30216 0.12286 0.049601 1 5398 3010 3290 3293 5670 5670 0.004683385225234815 CYQRQMFILI 10 Unmodified _CYQRQMFILI_ 0 0 0 ENST00000447654.5_1_6:34213577-34213877:+|nuORF ENST00000447654.5_1_6:34213577-34213877:+|nuORF ENST00000447654.5_1_6:34213577-34213877:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 438.8951416015625 3 438.894755 1313.66243 NaN NaN NaN NaN NaN NaN NaN 11.449 1 11.449 10.949 11.949 0 0 0 0 0.22588 1 1518 1518 0.15932 0 1 5399 9951 3291 3294 5671 5671 0.01814949716049341 CYREKKFRE 9 Unmodified _CYREKKFRE_ 0 0 0 nc|ENSG00000174521|Q8N6N2-2|TTC9B;ENST00000593586.1_1_19:40723712-40724288:-|nuORF;ENSG00000174521|ENST00000311308|TTC9B nc|ENSG00000174521|Q8N6N2-2|TTC9B nc|ENSG00000174521|Q8N6N2-2|TTC9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 629.8214111328125 2 629.821689 1257.62883 NaN NaN NaN NaN NaN NaN NaN 10.896 1 9.802 9.302 10.302 -1.0936 0 0 0 0.23508 1 1264 1264 0.6015 0 1 5400 6355 3292 3295 5672 5672 0.01031664268498389 CYSGATMQGY 10 Unmodified _CYSGATMQGY_ 0 0 0 REV__UROC1|p.K307Rfs*77|1|0.35|ENSG00000159650|chr3:126501263-126501263|T/-|frameshift_variant REV__UROC1|p.K307Rfs*77|1|0.35|ENSG00000159650|chr3:126501263-126501263|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.216552734375 3 360.809015 1079.40522 -0.50498 -0.0001822 0.44078 0.00015904 -0.064198 -2.3163E-05 360.8099096034441 126.6 0.78728 121.9 121.61 122.4 -4.6998 37 21 3 0 0 0 0.91149 1 24350 24350 3.5871 0 1 1302900 + 5401 25521 3293 3296 5673 5673 -0.13130992227934257 CYTGGDYPS 9 Unmodified _CYTGGDYPS_ 0 0 0 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7799987792969 2 481.68165 961.348747 NaN NaN NaN NaN NaN NaN NaN 151 1 146.25 145.75 146.75 -4.7523 0 0 0 0.19632 1 29996 29996 0.073264 0.073264 1 + 5402 19212 3294 3297 5674 5674 -0.13347296792983343 CYTVRILVR 9 Unmodified _CYTVRILVR_ 0 0 0 REV__ENSG00000186838|ENST00000335426|SELENOV REV__ENSG00000186838|ENST00000335426|SELENOV MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.8876647949219 3 374.886588 1121.63793 NaN NaN NaN NaN NaN NaN NaN 10.79 1 9.8859 9.3859 10.386 -0.90401 0 0 0 0.23508 1 1380 1380 0.26902 0.26902 1 + 5403 19057 3295 3298 5675 5675 0.08198057624827015 CYTVRILVR 9 Unmodified _CYTVRILVR_ 0 0 0 REV__ENSG00000186838|ENST00000335426|SELENOV REV__ENSG00000186838|ENST00000335426|SELENOV MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 374.88623046875 3 374.886588 1121.63793 NaN NaN NaN NaN NaN NaN NaN 10.158 1 9.0918 8.5918 9.5918 -1.0664 0 0 0 0.23508 1 1082 1082 0.26902 0.26902 1 + 5404 19057 3295 3298 5676 5676 0.08198057624827015 CYVTDKHGKLP 11 Unmodified _CYVTDKHGKLP_ 0 0 0 REV__ENSG00000163913|ENST00000348417|IFT122 REV__ENSG00000163913|ENST00000348417|IFT122 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7633056640625 2 630.823898 1259.63324 NaN NaN NaN NaN NaN NaN NaN 10.176 1 9.1094 8.6094 9.6094 -1.0664 0 0 0 0.23698 1 1085 1085 1.3295 0.72803 1 + 5405 17628 3296 3299 5677 5677 0.013811286914005905 CYWIKGNY 8 Unmodified _CYWIKGNY_ 0 0 0 nc|ENSG00000150687|O95084-2|PRSS23;ENSG00000150687|ENST00000280258|PRSS23 nc|ENSG00000150687|O95084-2|PRSS23 nc|ENSG00000150687|O95084-2|PRSS23 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6926879882812 2 523.741845 1045.46914 -0.074677 -3.9111E-05 -0.0044311 -2.3208E-06 -0.079108 -4.1432E-05 523.7417547341305 126.51 0.98709 121.89 121.41 122.4 -4.6172 80 27 4 0 0 0 8448 1 24897 24897 4.2837 4.2837 1 24175000 5406 4833 3297 3300 5678 5678 -0.051778440086991395 CYYMATDES 9 Unmodified _CYYMATDES_ 0 0 0 REV__nc|ENSG00000211961|A0A0A0MS14|IGHV1-45 REV__nc|ENSG00000211961|A0A0A0MS14|IGHV1-45 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.278076171875 2 541.6939 1081.37325 NaN NaN NaN NaN NaN NaN NaN 34.815 1 32.539 32.039 33.039 -2.2766 0 0 0 0.19622 1 6111 6111 0.96228 0.83941 1 + 5407 24261 3298 3301 5679 5679 -0.1641840470176703 CYYVLFHLH 9 Unmodified _CYYVLFHLH_ 0 0 0 ENST00000467542.5_1_13:20411687-20425669:-|nuORF;nc|ENSG00000132950|Q9UJ78-1|ZMYM5 ENST00000467542.5_1_13:20411687-20425669:-|nuORF ENST00000467542.5_1_13:20411687-20425669:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 398.86883544921875 3 398.863672 1193.56919 NaN NaN NaN NaN NaN NaN NaN 11.384 1 10.318 9.8179 10.818 -1.0664 0 0 0 0.23508 1 1287 1287 0.26902 0 1 5408 10152 3299 3302 5680 5680 -0.01985606674884366 DAAAMYEESEE 11 Unmodified _DAAAMYEESEE_ 0 0 0 REV__ENST00000510666.1_1_5:68840710-68849495:+|nuORF REV__ENST00000510666.1_1_5:68840710-68849495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7672119140625 2 622.734808 1243.45506 NaN NaN NaN NaN NaN NaN NaN 63.877 1 60.88 60.38 61.38 -2.9975 0 0 0 0.22943 1 12348 12348 8.7454 3.0136 1 + 5409 19365 3300 3303 5681 5681 -0.1569263080896235 DAAAPPPPPP 10 Unmodified _DAAAPPPPPP_ 0 0 0 ENST00000296498.3_1_4:119273813-119274023:-|nuORF ENST00000296498.3_1_4:119273813-119274023:-|nuORF ENST00000296498.3_1_4:119273813-119274023:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23974609375 2 465.239993 928.465432 -0.45654 -0.0002124 0.50346 0.00023423 0.04692 2.1829E-05 465.24017317738793 36.284 3.3587 33.89 32.599 35.957 -2.3938 214 95 3 0 0 0 0.057863 1 6494 6494 81.613 6.6841 1 8545700 5410 8510 3301 3304 5682 5682 -0.0016619051091311121 DAAAPPPPPP 10 Unmodified _DAAAPPPPPP_ 0 0 0 ENST00000296498.3_1_4:119273813-119274023:-|nuORF ENST00000296498.3_1_4:119273813-119274023:-|nuORF ENST00000296498.3_1_4:119273813-119274023:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2388916015625 2 465.239993 928.465432 0.26968 0.00012546 -0.38044 -0.000177 -0.11077 -5.1533E-05 465.2395926826212 36.067 5.1361 33.79 32.726 37.862 -2.2766 248 146 3 0 0 0 0.096811 1 7129 7129 61.357 2.6787 1 7106700 5411 8510 3301 3304 5683 5683 -0.0016619051091311121 DAAGQLKVA 9 Unmodified _DAAGQLKVA_ 0 0 0 REV__ENSG00000152784|ENST00000415738|PRDM8 REV__ENSG00000152784|ENST00000415738|PRDM8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2182312011719 2 436.745442 871.476331 -0.1007 -4.3979E-05 -0.69613 -0.00030403 -0.79683 -0.00034801 436.7453949555075 42.044 0.3596 39.393 39.141 39.5 -2.651 12 9 2 0 0 0 0.69192 1 7542 7542 6.2058 0 1 386320 + 5412 17122 3302 3305 5684 5684 0.035452118633770624 DAAHAAWTH 9 Unmodified _DAAHAAWTH_ 0 0 0 RBM15|p.L500M|1|0.28|ENSG00000162775|chr1:110340903-110340903|C/A|missense_variant;RBM15|p.P592Qfs*23|1|0.22|ENSG00000162775|chr1:110341176-110341176|C/-|frameshift_variant;nc|ENSG00000162775|Q96T37-4|RBM15;RBM15|p.G910Afs*41|1|0.42|ENSG00000162775|chr1:110342129-110342129|G/-|frameshift_variant;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15 RBM15|p.L500M|1|0.28|ENSG00000162775|chr1:110340903-110340903|C/A|missense_variant RBM15|p.L500M|1|0.28|ENSG00000162775|chr1:110340903-110340903|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2734375 2 490.222665 978.430778 NaN NaN NaN NaN NaN NaN NaN 79.502 1 75.992 75.492 76.492 -3.5102 0 0 0 0.20628 1 15525 15525 21.747 2.4897 1 5413 5368 3303 3306 5685 5685 -0.05930013599015638 DAAVEMKR 8 Unmodified _DAAVEMKR_ 0 0 0 ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1;ENST00000471767.1_1_5:176893910-176894598:-|nuORF ENST00000472831.5_1_5:176884436-176895158:-|nuORF ENST00000472831.5_1_5:176884436-176895158:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2396545410156 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 35.785 1 33.532 33.032 34.032 -2.2527 0 0 0 0.21039 1 6315 6315 16.942 1.0951 1 5414 2761 3304 3307 5686 5686 -0.003190320140674885 DAAVLKRRGY 10 Unmodified _DAAVLKRRGY_ 0 0 0 ENSG00000212122|ENST00000390666|TSSK1B ENSG00000212122|ENST00000390666|TSSK1B ENSG00000212122|ENST00000390666|TSSK1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 574.8278198242188 2 574.830372 1147.64619 NaN NaN NaN NaN NaN NaN NaN 51.847 1 51.847 51.347 52.347 0 0 0 0 0.22588 1 9848 9848 6.7232 0.51738 1 5415 7679 3305 3308 5687 5687 0.0782732786581164 DACDCDCDYR 10 Unmodified _DACDCDCDYR_ 0 0 0 REV__ENSG00000213139|ENST00000307944|CRYGS REV__ENSG00000213139|ENST00000307944|CRYGS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2493286132812 2 589.680998 1177.34744 0.60077 0.00035426 -0.98609 -0.00058148 -0.38532 -0.00022722 589.6803253387947 166.12 0.20671 161.14 161.05 161.26 -4.9811 7 5 2 0 0 0 0.76714 1 32549 32549 0.35063 0.35063 1 7388200 + 5416 19634 3306 3309 5688 5688 -0.2341362221570762 DADDTDAGTY 10 Unmodified _DADDTDAGTY_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6817626953125 2 522.193633 1042.37271 0.28754 0.00015015 -2.5603 -0.001337 -2.2728 -0.0011868 522.6944788521337 124.8 0.82037 120.15 119.78 120.6 -4.6495 68 22 5 0 0 0 0.51311 1 24003 24003 0.26539 0 1 3617800 5417 5053;26536 3307 3310 5689 5689 -0.14677784825607887 DADDVAILTY 10 Unmodified _DADDVAILTY_ 0 0 0 TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant;ENSG00000166848|ENST00000300086|TERF2IP TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7760620117188 2 548.263862 1094.51317 0.10272 5.6319E-05 -0.10795 -5.9182E-05 -0.0052222 -2.8631E-06 548.2640211580477 139.6 0.67387 134.65 134.17 134.85 -4.952 27 18 2 0 0 0 0.52179 1 26804 26804 32.786 15.673 1 1362000 5418 5754 3308 3311 5690 5690 -0.030305811013704442 DADDVAILTY 10 Unmodified _DADDVAILTY_ 0 0 0 TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant;ENSG00000166848|ENST00000300086|TERF2IP TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 548.263862 1094.51317 0.32791 0.00017978 -5.6178 -0.0030801 -5.2899 -0.0029003 548.7607993806616 139.22 0.10214 134.37 134.29 134.39 -4.8492 -0.13836 -0.0053355 NaN 32.786 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 642690 5419 5754 3308 3311 -0.030305811013704442 DAEFPKVGV 9 Unmodified _DAEFPKVGV_ 0 0 0 REV__SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant REV__SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24462890625 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 59.463 1 56.149 55.649 56.649 -3.3139 0 0 0 0.23508 1 11057 11057 11.64 0 1 + 5420 16974 3309 3312 5691 5691 0.009820786605814646 DAEGSVYPKQ 10 Unmodified _DAEGSVYPKQ_ 0 0 0 REV__nc|ENSG00000100034|P49593-2|PPM1F REV__nc|ENSG00000100034|P49593-2|PPM1F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7763061523438 2 547.261653 1092.50875 0.32208 0.00017626 0.28802 0.00015762 0.61009 0.00033388 547.261611637269 21.379 0.3342 21.379 21.194 21.528 0 22 9 3 0 0 0 0.68509 1 3557 3557 32.786 5.1569 1 1412800 + 5421 14658 3310 3313 5692 5692 -0.03380045524295383 DAEGSVYPKQ 10 Unmodified _DAEGSVYPKQ_ 0 0 0 REV__nc|ENSG00000100034|P49593-2|PPM1F REV__nc|ENSG00000100034|P49593-2|PPM1F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7763671875 2 547.261653 1092.50875 0.90958 0.00049778 -0.5564 -0.0003045 0.35318 0.00019328 547.2611406421121 22.875 0.3085 21.321 21.132 21.441 -1.5532 14 8 2 0 0 0 0.8126 1 3950 3950 24.991 10.153 1 844160 + 5422 14658 3310 3313 5693 5693 -0.03380045524295383 DAFIFKSDV 9 Unmodified _DAFIFKSDV_ 0 0 0 FASTKD2|p.G89V|1|0.44|ENSG00000118246|chr2:206766959-206766959|G/T|missense_variant;FASTKD2|p.G89R|1|0.44|ENSG00000118246|chr2:206766958-206766958|G/C|missense_variant;nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2 FASTKD2|p.G89V|1|0.44|ENSG00000118246|chr2:206766959-206766959|G/T|missense_variant FASTKD2|p.G89V|1|0.44|ENSG00000118246|chr2:206766959-206766959|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.269775390625 2 521.266207 1040.51786 0.78038 0.00040679 -0.50736 -0.00026447 0.27302 0.00014232 521.2658732280837 104.51 1.3502 100.46 99.735 101.08 -4.0543 103 37 4 0 0 0 0.46882 1 20182 20182 21.537 4.4241 1 18753000 5423 3024 3311 3314 5694 5694 -0.0007765216794268781 DAFTVEVAE 9 Unmodified _DAFTVEVAE_ 0 0 0 REV__ENSG00000163466|ENST00000315717|ARPC2 REV__ENSG00000163466|ENST00000315717|ARPC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.254638671875 2 490.732197 979.449842 0.41258 0.00020247 -0.34573 -0.00016966 0.06685 3.2806E-05 490.7319733365155 103.82 0.66914 99.769 99.243 99.913 -4.0543 31 18 2 0 0 0 0.47479 1 19893 19893 30.637 10.183 1 2396900 + 5424 17573 3312 3315 5695 5695 -0.04070521818607631 DAGAAFAK 8 Unmodified _DAGAAFAK_ 0 0 0 REV__ENSG00000127884|ENST00000368547|ECHS1 REV__ENSG00000127884|ENST00000368547|ECHS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 752.3838500976562 1 750.37808 749.370804 0.55455 0.00041613 -0.40085 -0.00030079 0.15371 0.00011534 750.3776728560686 51.413 2.0168 51.413 51.058 53.075 0 121 56 3 0 0 0 0.71273 3 9716 9716;9739;9787 12.532 2.3482 1 19710000 + 5425 15901 3313 3316 5696;5697;5698 5696 -0.013907042622349763 DAGAAFAK 8 Unmodified _DAGAAFAK_ 0 0 0 REV__ENSG00000127884|ENST00000368547|ECHS1 REV__ENSG00000127884|ENST00000368547|ECHS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 752.3832397460938 1 750.37808 749.370804 0.40768 0.00030592 -0.20477 -0.00015366 0.20291 0.00015226 750.3777929864348 54.121 2.2034 51.237 50.872 53.076 -2.8837 143 63 3 0 0 0 0.71273 1 10348 10348 12.532 3.9383 1 28481000 + 5426 15901 3313 3316 5699 5699 -0.013907042622349763 DAGANGPVHML 11 Unmodified _DAGANGPVHML_ 0 0 0 REV__nc|ENSG00000167930|Q9H0X4-2|FAM234A REV__nc|ENSG00000167930|Q9H0X4-2|FAM234A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.25830078125 2 541.258391 1080.50223 NaN NaN NaN NaN NaN NaN NaN 125.48 1 120.83 120.33 121.33 -4.6495 0 0 0 0.224 1 24142 24142 13.042 1.4022 1 + 5427 17981 3314 3317 5700 5700 -0.034802619566335125 DAGEKLPSV 9 Unmodified _DAGEKLPSV_ 0 0 0 nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62;nc|ENSG00000075702|O43379-3|WDR62;ENST00000378860.8_1_19:36545867-36564559:+|nuORF;nc|ENSG00000075702|O43379-2|WDR62;ENST00000608676.1_1_19:36545867-36550933:+|nuORF nc|ENSG00000075702|O43379|WDR62 nc|ENSG00000075702|O43379|WDR62 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2291259765625 2 458.242732 914.470912 -0.050696 -2.3231E-05 0.15706 7.1974E-05 0.10637 4.8743E-05 458.2427294345381 95.931 1.2375 91.882 91.479 92.717 -4.0496 73 35 3 0 0 0 0.19311 1 18923 18923 37.974 1.847 1 7306200 5428 1525 3315 3318 5701 5701 0.010254882809022092 DAGGKIKPGKL 11 Unmodified _DAGGKIKPGKL_ 0 0 0 REV__AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant REV__AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 542.3316040039062 2 542.329673 1082.64479 NaN NaN NaN NaN NaN NaN NaN 166.32 1 161.53 161.03 162.03 -4.7898 0 0 0 0.22632 1 33399 33399 3.0723 2.1971 1 + 5429 12987 3316 3319 5702 5702 0.10677693777029162 DAGGWDHY 8 Unmodified _DAGGWDHY_ 0 0 0 REV__ENSG00000168582|ENST00000304502|CRYGA REV__ENSG00000168582|ENST00000304502|CRYGA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2454833984375 2 460.680299 919.346045 NaN NaN NaN NaN NaN NaN NaN 103.85 1 103.85 103.35 104.35 0 0 0 0 0.21486 1 20410 20410 8.5933 3.3626 1 + 5430 18038 3317 3320 5703 5703 -0.11685384135626009 DAGPCCCCYC 10 Unmodified _DAGPCCCCYC_ 0 0 0 ENST00000220931.10_1_8:102803112-102803181:-|nuORF ENST00000220931.10_1_8:102803112-102803181:-|nuORF ENST00000220931.10_1_8:102803112-102803181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 518.785888671875 2 519.136326 1036.2581 NaN NaN NaN NaN NaN NaN NaN 169.16 1 164.28 163.78 164.78 -4.873 0 0 0 2.8426 1 33397 33397 0.0013812 0.0013812 1 5431 8132 3318 3321 5704 5704 -0.258578717004184 DAGYFFSTA 9 Unmodified _DAGYFFSTA_ 0 0 0 ENSG00000172404|ENST00000307221|DNAJB7 ENSG00000172404|ENST00000307221|DNAJB7 ENSG00000172404|ENST00000307221|DNAJB7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25665283203125 2 489.713808 977.413062 0.013702 6.71E-06 0.38883 0.00019041 0.40253 0.00019712 489.7131865125808 49.186 0.38689 46.305 46.098 46.485 -2.8811 12 10 2 0 0 0 0.46541 1 9283 9283 21.747 2.4897 1 689090 5432 6220 3319 3322 5705 5705 -0.07654773644503621 DAHGVFLVRQ 10 Unmodified _DAHGVFLVRQ_ 0 0 0 ENSG00000111252|ENST00000341259|SH2B3;SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant ENSG00000111252|ENST00000341259|SH2B3 ENSG00000111252|ENST00000341259|SH2B3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.20989990234375 3 381.208607 1140.60399 NaN NaN NaN NaN NaN NaN NaN 60.02 1 56.706 56.206 57.206 -3.3139 0 0 0 2.8426 1 11171 11171 0.26539 0.19213 1 5433 2611 3320 3323 5706 5706 0.03931352457425419 DAHLDMAT 8 Unmodified _DAHLDMAT_ 0 0 0 REV__ZNF365|p.K399Sfs*6|3|0.2|ENSG00000138311|chr10:62399754-62399754|A/-|frameshift_variant REV__ZNF365|p.K399Sfs*6|3|0.2|ENSG00000138311|chr10:62399754-62399754|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2284851074219 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 98.282 1 94.013 93.513 94.513 -4.2692 0 0 0 0.2343 1 18784 18784 0.62683 0.61855 1 + 5434 16450 3321 3324 5707 5707 -0.07147286693441401 DAIYDIILDMK 11 Unmodified _DAIYDIILDMK_ 0 0 0 INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant;INPP5F|p.A917Qfs*71|1|0.07|ENSG00000198825|chr10:119827129-119827130|-/CAGAGTG|frameshift_variant;ENSG00000198825|ENST00000650623|INPP5F INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2297058105469 3 437.228456 1308.66354 NaN NaN NaN NaN NaN NaN NaN 53.513 1 53.513 53.013 54.013 0 0 0 0 0.22632 1 10193 10193 0.172 0 1 5435 7502 3322 3325 5708 5708 0.02155442565890553 DAKDWVPV 8 Unmodified _DAKDWVPV_ 0 0 0 nc|ENSG00000146966|Q9ULE3-2|DENND2A;ENSG00000146966|ENST00000496613|DENND2A nc|ENSG00000146966|Q9ULE3-2|DENND2A nc|ENSG00000146966|Q9ULE3-2|DENND2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24176025390625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 61.425 1 61.425 60.925 61.925 0 0 0 0 0.23312 1 11784 11784 6.2058 6.1975 1 5436 4677 3323 3326 5709 5709 -0.0016619051090174253 DALGQLEK 8 Unmodified _DALGQLEK_ 0 0 0 REV__CYP2A13|p.E245A|1|0.21|ENSG00000197838|chr19:41091811-41091811|A/C|missense_variant REV__CYP2A13|p.E245A|1|0.21|ENSG00000197838|chr19:41091811-41091811|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2294006347656 2 437.23745 872.460347 0.027454 1.2004E-05 0.019222 8.4044E-06 0.046676 2.0408E-05 437.2373976040042 89.631 0.74248 89.631 89.206 89.949 0 51 20 3 0 0 0 8448 2 17472 17472;17516 28.46 13.474 1 10538000 + 5437 13626 3324 3327 5710;5711 5710 0.019015056264720442 DALGQLEK 8 Unmodified _DALGQLEK_ 0 0 0 REV__CYP2A13|p.E245A|1|0.21|ENSG00000197838|chr19:41091811-41091811|A/C|missense_variant REV__CYP2A13|p.E245A|1|0.21|ENSG00000197838|chr19:41091811-41091811|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2281799316406 2 437.23745 872.460347 -0.13187 -5.7657E-05 0.34636 0.00015144 0.21449 9.3783E-05 437.2376488576376 93.452 1.033 89.461 88.968 90.001 -3.9907 66 29 3 0 0 0 0.27447 1 18235 18235 37.974 7.3375 1 18021000 + 5438 13626 3324 3327 5712 5712 0.019015056264720442 DALGQLEK 8 Unmodified _DALGQLEK_ 0 0 0 REV__CYP2A13|p.E245A|1|0.21|ENSG00000197838|chr19:41091811-41091811|A/C|missense_variant REV__CYP2A13|p.E245A|1|0.21|ENSG00000197838|chr19:41091811-41091811|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22943115234375 2 437.23745 872.460347 0.1778 7.7741E-05 -0.33328 -0.00014572 -0.15548 -6.798E-05 437.2372474331148 93.71 0.80979 89.566 89.115 89.925 -4.1435 60 23 3 0 0 0 8448 1 17822 17822 23.722 0 1 17346000 + 5439 13626 3324 3327 5713 5713 0.019015056264720442 DALGQLEK 8 Unmodified _DALGQLEK_ 0 0 0 REV__CYP2A13|p.E245A|1|0.21|ENSG00000197838|chr19:41091811-41091811|A/C|missense_variant REV__CYP2A13|p.E245A|1|0.21|ENSG00000197838|chr19:41091811-41091811|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2291564941406 2 437.23745 872.460347 -0.11577 -5.0618E-05 0.27728 0.00012124 0.16151 7.0619E-05 437.2375762875755 93.47 1.0026 89.626 89.158 90.16 -3.844 64 28 3 0 0 0 8448 1 17866 17866 28.46 4.7381 1 16848000 + 5440 13626 3324 3327 5714 5714 0.019015056264720442 DALKRFWQRRP 11 Unmodified _DALKRFWQRRP_ 0 0 0 REV__ASIC2|p.T213Dfs*15|1|0.38|ENSG00000108684|chr17:33111986-33111987|-/C|frameshift_variant REV__ASIC2|p.T213Dfs*15|1|0.38|ENSG00000108684|chr17:33111986-33111987|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 736.9871215820312 2 736.915301 1471.81605 NaN NaN NaN NaN NaN NaN NaN 167.2 1 162.41 161.91 162.91 -4.7898 0 0 0 0.23429 1 33692 33692 4.897 0 1 + 5441 13132 3325 3328 5715 5715 0.09901443868193383 DALVQGSSPGL 11 Unmodified _DALVQGSSPGL_ 0 0 0 ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000124469|ENST00000244336|CEACAM8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2706298828125 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 97.436 1 97.436 96.936 97.936 0 0 0 0 0.21121 1 19094 19094 1.4074 0.56249 1 5442 3316 3326 3329 5716 5716 0.009925448553985916 DALYKELTE 9 Unmodified _DALYKELTE_ 0 0 0 REV__ENSG00000111860|ENST00000368491|CEP85L REV__ENSG00000111860|ENST00000368491|CEP85L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2581787109375 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 120.05 1 120.05 119.55 120.55 0 0 0 0 0.23508 1 23660 23660 10.074 2.1638 1 + 5443 15267 3327 3330 5717 5717 -0.0031399072172462184 DAMDVAGEQ 9 Unmodified _DAMDVAGEQ_ 0 0 0 ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3 ENST00000486268.5_1_20:34129846-34130758:+|nuORF ENST00000486268.5_1_20:34129846-34130758:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 467.7187805175781 2 468.192382 934.370211 -0.069103 -3.2353E-05 1.2346 0.00057805 1.1655 0.0005457 468.19293640714193 45.86 1.0419 43.019 42.584 43.626 -2.8409 48 29 2 0 0 0 0.61212 1 8707 8707 1.2148 0.53344 1 2208300 5444 3409 3328 3331 5718 5718 -0.09959911764246954 DAMDVAGEQ 9 Unmodified _DAMDVAGEQ_ 0 0 0 ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3 ENST00000486268.5_1_20:34129846-34130758:+|nuORF ENST00000486268.5_1_20:34129846-34130758:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 468.192382 934.370211 0.28844 0.00013505 1.3099 0.00061328 1.5983 0.00074832 468.1929963633271 43.038 1.011 43.038 42.456 43.467 0 0.029969 0.00017547 NaN 1.2148 47 28 2 NaN NaN NaN NaN 0 NaN NaN 0 2224200 5445 3409 3328 3331 -0.09959911764246954 DAMDVAGEQ 9 Unmodified _DAMDVAGEQ_ 0 0 0 ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3 ENST00000486268.5_1_20:34129846-34130758:+|nuORF ENST00000486268.5_1_20:34129846-34130758:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 468.192382 934.370211 -0.053179 -2.4898E-05 1.4038 0.00065723 1.3506 0.00063233 468.19302278677395 45.85 1.0685 42.985 42.693 43.761 -2.8653 -0.02291 0.00026338 NaN 1.2148 52 30 2 NaN NaN NaN NaN 0 NaN NaN 0 3399700 5446 3409 3328 3331 -0.09959911764246954 DAMDVAGEQ 9 Unmodified _DAMDVAGEQ_ 0 0 0 ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3 ENST00000486268.5_1_20:34129846-34130758:+|nuORF ENST00000486268.5_1_20:34129846-34130758:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 468.192382 934.370211 -0.098578 -4.6154E-05 0.7098 0.00033232 0.61122 0.00028617 468.19263722069167 45.856 0.96958 42.99 42.677 43.646 -2.8666 -0.018264 -0.00038643 NaN 1.2148 49 27 2 NaN NaN NaN NaN 0 NaN NaN 0 4324200 5447 3409 3328 3331 -0.09959911764246954 DANFLLYVS 9 Unmodified _DANFLLYVS_ 0 0 0 REV__nc|ENSG00000182585|Q6UW88-7|EPGN REV__nc|ENSG00000182585|Q6UW88-7|EPGN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2681884765625 2 521.266207 1040.51786 -0.45069 -0.00023493 0.79126 0.00041246 0.34057 0.00017753 521.2665549602184 104.75 1.3224 100.53 99.924 101.25 -4.2183 112 37 4 0 0 0 0.40602 1 20546 20546 25.399 3.6527 1 21065000 + 5448 24200 3329 3332 5719 5719 -0.0007765216794268781 DANFLLYVS 9 Unmodified _DANFLLYVS_ 0 0 0 REV__nc|ENSG00000182585|Q6UW88-7|EPGN REV__nc|ENSG00000182585|Q6UW88-7|EPGN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2691650390625 2 521.266207 1040.51786 -0.57599 -0.00030025 0.84859 0.00044234 0.2726 0.0001421 521.2665672144208 104.81 1.3498 100.47 99.833 101.18 -4.346 105 38 4 0 0 0 0.40602 1 20043 20043 25.399 1.3787 1 24103000 + 5449 24200 3329 3332 5720 5720 -0.0007765216794268781 DANFLLYVS 9 Unmodified _DANFLLYVS_ 0 0 0 REV__nc|ENSG00000182585|Q6UW88-7|EPGN REV__nc|ENSG00000182585|Q6UW88-7|EPGN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2684326171875 2 521.266207 1040.51786 0.78038 0.00040679 -0.50736 -0.00026447 0.27302 0.00014232 521.2658732280837 104.51 1.3502 100.46 99.735 101.08 -4.0543 103 37 4 0 0 0 0.40602 1 20047 20047 25.399 8.457 1 18753000 + 5450 24200 3329 3332 5721 5721 -0.0007765216794268781 DAPAQTCRLDA 11 Unmodified _DAPAQTCRLDA_ 0 0 0 REV__nc|ENSG00000132470|P16144-5|ITGB4 REV__nc|ENSG00000132470|P16144-5|ITGB4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.70941162109375 3 387.517 1159.52917 0.072575 2.8124E-05 0.44232 0.00017141 0.51489 0.00019953 387.5171256917703 58.425 3.3036 55.174 53.274 56.578 -3.2517 172 93 3 0 0 0 0.75092 1 10876 10876 8.2864 1.6561 1 5214700 + 5451 24040 3330 3333 5722 5722 -0.044211981361286234 DAPAQTCRLDA 11 Unmodified _DAPAQTCRLDA_ 0 0 0 REV__nc|ENSG00000132470|P16144-5|ITGB4 REV__nc|ENSG00000132470|P16144-5|ITGB4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 387.517 1159.52917 -0.19886 -7.7063E-05 0.75112 0.00029107 0.55225 0.00021401 387.5172446359395 55.183 3.5284 55.183 53.458 56.986 0 0.017273 -8.5811E-05 NaN 8.2864 222 99 4 NaN NaN NaN NaN 0 NaN NaN 0 6992700 + 5452 24040 3330 3333 -0.044211981361286234 DAPAQTCRLDA 11 Unmodified _DAPAQTCRLDA_ 0 0 0 REV__nc|ENSG00000132470|P16144-5|ITGB4 REV__nc|ENSG00000132470|P16144-5|ITGB4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 387.517 1159.52917 -0.30721 -0.00011905 0.81867 0.00031725 0.51146 0.0001982 387.51726777516245 58.041 2.7201 55.13 53.598 56.318 -2.9105 -0.035238 -7.2811E-06 NaN 8.2864 161 77 3 NaN NaN NaN NaN 0 NaN NaN 0 4008000 + 5453 24040 3330 3333 -0.044211981361286234 DAPAQTCRLDA 11 Unmodified _DAPAQTCRLDA_ 0 0 0 REV__nc|ENSG00000132470|P16144-5|ITGB4 REV__nc|ENSG00000132470|P16144-5|ITGB4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 387.517 1159.52917 -0.55565 -0.00021532 1.1077 0.00042926 0.55206 0.00021393 387.5173874289858 58.381 3.0356 55.175 53.586 56.622 -3.2052 0.0098583 0.00032875 NaN 8.2864 201 86 4 NaN NaN NaN NaN 0 NaN NaN 0 5348500 + 5454 24040 3330 3333 -0.044211981361286234 DAPVVTNVT 9 Unmodified _DAPVVTNVT_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2316589355469 2 458.242732 914.470912 0.1328 6.0856E-05 0.043502 1.9935E-05 0.1763 8.079E-05 458.24272094068834 89.145 1.2308 89.145 88.682 89.913 0 92 34 4 0 0 0 0.35556 1 17417 17417 12.241 0 1 77483000 5455 998 3331 3334 5723 5723 0.010254882809135779 DAREKLHIP 9 Unmodified _DAREKLHIP_ 0 0 0 nc|ENSG00000120063|Q14344-2|GNA13;ENSG00000120063|ENST00000439174|GNA13 nc|ENSG00000120063|Q14344-2|GNA13 nc|ENSG00000120063|Q14344-2|GNA13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2052001953125 3 360.204974 1077.59309 NaN NaN NaN NaN NaN NaN NaN 36.817 1 34.348 33.848 34.848 -2.4688 0 0 0 0.19636 1 6801 6801 2.4985 0.59211 1 5456 3117 3332 3335 5724 5724 0.057399500831252226 DARHHQVV 8 Unmodified _DARHHQVV_ 0 0 0 ENST00000374213.2_1_1:26646834-26646963:+|nuORF ENST00000374213.2_1_1:26646834-26646963:+|nuORF ENST00000374213.2_1_1:26646834-26646963:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2515869140625 2 481.251757 960.488962 0.60738 0.0002923 -1.2514 -0.00060222 -0.64398 -0.00030992 481.25118399669964 22.037 0.14289 20.563 20.484 20.626 -1.4742 5 3 2 0 0 0 0.70613 1 3758 3758 13.508 1.8676 1 256790 5457 9215 3333 3336 5725 5725 0.007136680462849654 DARPLPAPAAC 11 Unmodified _DARPLPAPAAC_ 0 0 0 NKPD1|p.L170Cfs*14|1|0.31|ENSG00000179846|chr19:45153264-45153264|C/-|frameshift_variant;ENSG00000179846|ENST00000686631|NKPD1 NKPD1|p.L170Cfs*14|1|0.31|ENSG00000179846|chr19:45153264-45153264|C/-|frameshift_variant NKPD1|p.L170Cfs*14|1|0.31|ENSG00000179846|chr19:45153264-45153264|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27587890625 2 541.276583 1080.53861 NaN NaN NaN NaN NaN NaN NaN 129.11 1 124.37 123.87 124.87 -4.7408 0 0 0 0.23087 1 24845 24845 7.609 0.31972 1 5458 6646 3334 3337 5726 5726 0.0015661494005598797 DARRCCMWY 9 Unmodified _DARRCCMWY_ 0 0 0 REV__ENSG00000177051|ENST00000317683|FBXO46 REV__ENSG00000177051|ENST00000317683|FBXO46 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.295166015625 2 602.246446 1202.47834 NaN NaN NaN NaN NaN NaN NaN 51.951 1 48.906 48.406 49.406 -3.0453 0 0 0 0.1963 1 9549 9549 0.20686 0.16307 1 + 5459 18536 3335 3338 5727 5727 -0.11480141986316994 DARSGPAQAA 10 Unmodified _DARSGPAQAA_ 0 0 0 ENST00000557978.6_1_19:19680348-19681054:-|nuORF ENST00000557978.6_1_19:19680348-19681054:-|nuORF ENST00000557978.6_1_19:19680348-19681054:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1621398925781 3 315.157912 942.451907 NaN NaN NaN NaN NaN NaN NaN 25.541 1 23.893 23.393 24.393 -1.6482 0 0 0 2.8426 1 4482 4482 3.8763 0.59502 1 5460 11261 3336 3339 5728 5728 -0.021620482901539617 DASEAAEERAL 11 Unmodified _DASEAAEERAL_ 0 0 0 ENST00000512760.5_1_4:79841695-79860421:-|nuORF ENST00000512760.5_1_4:79841695-79860421:-|nuORF ENST00000512760.5_1_4:79841695-79860421:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7125549316406 3 387.850925 1160.53095 NaN NaN NaN NaN NaN NaN NaN 57.354 1 57.354 56.854 57.854 0 0 0 0 0.23211 1 10962 10962 6.6235 0.84002 1 5461 10759 3337 3340 5729 5729 -0.04289865846521934 DASGDFYSFL 10 Unmodified _DASGDFYSFL_ 0 0 0 nc|ENSG00000178217|Q5SQS7|SH2D4B;ENSG00000178217|ENST00000646907|SH2D4B nc|ENSG00000178217|Q5SQS7|SH2D4B nc|ENSG00000178217|Q5SQS7|SH2D4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21917724609375 3 374.497712 1120.47131 -0.20739 -7.7667E-05 -2.6399 -0.00098864 -2.8473 -0.0010663 374.4974814566307 19.055 0.86642 19.055 18.892 19.758 0 92 24 6 0 0 0 0.74847 1 3136 3136 6.1918 0.40842 1 54649000 5462 6568 3338 3341 5730 5730 -0.08411136789891316 DASGDIVELY 10 Unmodified _DASGDIVELY_ 0 0 0 ENSG00000188869|ENST00000359440|TMC3 ENSG00000188869|ENST00000359440|TMC3 ENSG00000188869|ENST00000359440|TMC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2590942382812 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 128.97 1 124.34 123.84 124.84 -4.6292 0 0 0 0.22588 1 25426 25426 10.824 2.2306 1 5463 7204 3339 3342 5731 5731 -0.03950867618414122 DASQRTEI 8 Unmodified _DASQRTEI_ 0 0 0 ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 ENST00000452150.6_1_6:131179278-131188835:-|nuORF ENST00000452150.6_1_6:131179278-131188835:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.226806640625 2 460.227613 918.440674 NaN NaN NaN NaN NaN NaN NaN 52.012 1 48.935 48.435 49.435 -3.0773 0 0 0 0.21171 1 9561 9561 14.582 0 1 5464 1601 3340 3343 5732 5732 -0.021808703842907562 DATKEKDEM 9 Unmodified _DATKEKDEM_ 0 0 0 REV__nc|ENSG00000169169|Q8TCG5-3|CPT1C REV__nc|ENSG00000169169|Q8TCG5-3|CPT1C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2858276367188 2 533.739696 1065.46484 -0.12672 -6.7637E-05 0.62258 0.00033229 0.49585 0.00026466 533.7398272352539 40.886 0.31934 38.252 38.148 38.468 -2.6348 10 8 2 0 0 0 0.73268 1 7654 7654 18.146 3.3081 1 413750 + 5465 24157 3341 3344 5733 5733 -0.06527398012917729 DATPDSLSL 9 Unmodified _DATPDSLSL_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant;TNXB|p.G2152Afs*46|1|0.18|ENSG00000168477|chr6:32067750-32067750|C/-|frameshift_variant;TNXB|p.E2633Sfs*2|1|0.06|ENSG00000168477|chr6:32056832-32056832|C/-|frameshift_variant;TNXB|p.V2311M|1|0.33|ENSG00000168477|chr6:32062394-32062394|C/T|missense_variant nc|ENSG00000168477|P22105-1|TNXB nc|ENSG00000168477|P22105-1|TNXB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.226318359375 2 459.724372 917.434192 0.13682 6.2899E-05 0.22471 0.0001033 0.36153 0.0001662 459.72438849318274 98.236 0.76313 93.967 93.604 94.367 -4.2692 52 21 4 0 0 0 0.095051 1 18747 18747 57.471 2.6978 1 10504000 5466 5911 3342 3345 5734 5734 -0.027828083356666866 DAVHEDQF 8 Unmodified _DAVHEDQF_ 0 0 0 REV__nc|ENSG00000288701|Q5JSZ5|PRRC2B REV__nc|ENSG00000288701|Q5JSZ5|PRRC2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2359924316406 2 480.706514 959.398475 0.023529 1.131E-05 -4.2487 -0.0020424 -4.2252 -0.0020311 480.70369779087287 93.083 0.79785 89.093 88.622 89.42 -3.9907 32 22 2 0 0 0 0.91917 1 18257 18257 14.838 0 1 1404400 + 5467 24322 3343 3346 5735 5735 -0.08284845792661599 DAYLQRILA 9 Unmodified _DAYLQRILA_ 0 0 0 ENSG00000132003|ENST00000590508|ZSWIM4 ENSG00000132003|ENST00000590508|ZSWIM4 ENSG00000132003|ENST00000590508|ZSWIM4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.28076171875 2 531.800749 1061.58694 0.79372 0.0004221 -0.88046 -0.00046823 -0.086739 -4.6128E-05 531.8003346391896 105.58 1.9822 101.49 100.94 102.92 -4.0913 161 56 4 0 0 0 0.19983 1 20289 20289 19.626 0 1 320440000 5468 3704 3344 3347 5736 5736 0.05861431851622001 DCCCCCCCEE 10 Unmodified _DCCCCCCCEE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 556.930908203125 2 557.100769 1112.18699 NaN NaN NaN NaN NaN NaN NaN 173.44 1 168.65 168.15 169.15 -4.7898 0 0 0 2.8426 1 35380 35380 0 0 1 5469 6036 3345 3348 5737 5737 -0.3646207579174643 DCCYCEFFG 9 Unmodified _DCCYCEFFG_ 0 0 0 FAM193B|p.S518Qfs*20|1|0.34|ENSG00000146067|chr5:177524930-177524930|G/-|frameshift_variant;FAM193B|p.P574Lfs*11|1|0.1|ENSG00000146067|chr5:177524765-177524765|C/-|frameshift_variant;ENSG00000146067|ENST00000514747|FAM193B;ENST00000510479.5_1_5:176959168-176964941:-|nuORF;ENST00000506955.5_1_5:176959168-176966109:-|nuORF;nc|ENSG00000146067|Q96PV7|FAM193B;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A;ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.M833Wfs*23|2|0.34|ENSG00000125386|chr4:2696450-2696450|A/-|frameshift_variant FAM193B|p.S518Qfs*20|1|0.34|ENSG00000146067|chr5:177524930-177524930|G/-|frameshift_variant;nc|ENSG00000125386|P78312-4|FAM193A nc|ENSG00000125386|P78312-4|FAM193A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7725830078125 2 543.671914 1085.32927 NaN NaN NaN NaN NaN NaN NaN 165.47 1 160.52 160.02 161.02 -4.9484 0 0 0 0.23508 1 32336 32336 0.6015 0 1 5470 3356;4637 3346 3349 5738 5738 -0.20997712399753254 DCDCPASCY 9 Unmodified _DCDCPASCY_ 0 0 0 ENSG00000177679|ENST00000611745|SRRM3;nc|ENSG00000177679|A6NNA2|SRRM3 ENSG00000177679|ENST00000611745|SRRM3 ENSG00000177679|ENST00000611745|SRRM3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 326.1131591796875 3 326.099689 975.277239 NaN NaN NaN NaN NaN NaN NaN 177.58 1 177.58 177.08 178.08 0 0 0 0 0.23508 1 36786 36786 0.26902 0.26902 1 5471 6529 3347 3350 5739 5739 -0.2113887581350582 DCDDAHGNCQC 11 Unmodified _DCDDAHGNCQC_ 0 0 0 REV__LAMB1|p.T1709Lfs*22|3|0.29|ENSG00000091136|chr7:107924329-107924329|T/-|frameshift_variant REV__LAMB1|p.T1709Lfs*22|3|0.29|ENSG00000091136|chr7:107924329-107924329|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2650756835938 2 590.676247 1179.33794 NaN NaN NaN NaN NaN NaN NaN 125.2 1 120.43 119.93 120.93 -4.7681 0 0 0 0.22632 1 24033 24033 0 0 1 + 5472 14564 3348 3351 5740 5740 -0.24455390501225338 DCDMSCSMCE 10 Unmodified _DCDMSCSMCE_ 0 0 0 REV__nc|ENSG00000152894|Q15262-3|PTPRK REV__nc|ENSG00000152894|Q15262-3|PTPRK MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21502685546875 3 375.100484 1122.27962 NaN NaN NaN NaN NaN NaN NaN 20.168 1 18.843 18.343 19.343 -1.3251 0 0 0 2.8426 1 3116 3116 0.0013812 0.0013812 1 + 5473 24102 3349 3352 5741 5741 -0.2766253146235158 DCEDHANL 8 Unmodified _DCEDHANL_ 0 0 0 nc|ENSG00000101624|Q8TAP6-3|CEP76;nc|ENSG00000101624|Q8TAP6-2|CEP76;ENST00000590143.5_1_18:12662154-12700964:-|nuORF;ENSG00000101624|ENST00000262127|CEP76 nc|ENSG00000101624|Q8TAP6-3|CEP76 nc|ENSG00000101624|Q8TAP6-3|CEP76 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2310791015625 2 458.676899 915.339245 NaN NaN NaN NaN NaN NaN NaN 129.96 1 125.32 124.82 125.82 -4.6359 0 0 0 0.22934 1 25611 25611 0.62683 0.61855 1 5474 2079 3350 3353 5742 5742 -0.12181065078493702 DCEEVAVEEE 10 Unmodified _DCEEVAVEEE_ 0 0 0 REV__ENSG00000164080|ENST00000684192|RAD54L2 REV__ENSG00000164080|ENST00000684192|RAD54L2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3223876953125 2 576.224076 1150.4336 NaN NaN NaN NaN NaN NaN NaN 124.91 1 120.14 119.64 120.64 -4.7681 0 0 0 2.8426 1 23987 23987 0.26539 0 1 + 5475 17646 3351 3354 5743 5743 -0.13560015837674655 DCFLGLHDRK 10 Unmodified _DCFLGLHDRK_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2923583984375 2 602.30059 1202.58663 NaN NaN NaN NaN NaN NaN NaN 142.92 1 138.26 137.76 138.76 -4.656 0 0 0 2.8426 1 28253 28253 1.9064 1.8425 1 5476 7642 3352 3355 5744 5744 -0.006563111399373156 DCGSPWGPLD 10 Unmodified _DCGSPWGPLD_ 0 0 0 ENSG00000050555|ENST00000361069|LAMC3 ENSG00000050555|ENST00000361069|LAMC3 ENSG00000050555|ENST00000361069|LAMC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6853637695312 2 523.716024 1045.4175 NaN NaN NaN NaN NaN NaN NaN 36.29 1 33.942 33.442 34.442 -2.3479 0 0 0 0.22588 1 6417 6417 10.074 0.72649 1 5477 1242 3353 3356 5745 5745 -0.10339632493264617 DCHLRFSFGY 10 Unmodified _DCHLRFSFGY_ 0 0 0 ENST00000462591.1_1_1:114440257-114440542:-|nuORF ENST00000462591.1_1_1:114440257-114440542:-|nuORF ENST00000462591.1_1_1:114440257-114440542:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7652587890625 2 622.77949 1243.54443 0.83815 0.00052198 -0.14088 -8.7739E-05 0.69726 0.00043424 622.7794845441907 79.175 0.59048 79.175 78.854 79.444 0 26 16 2 0 0 0 0.42762 1 15437 15437 10.151 3.5202 1 2513900 5478 10087 3354 3357 5746 5746 -0.06760286548251315 DCHSDGGY 8 Unmodified _DCHSDGGY_ 0 0 0 ENST00000553238.5_1_12:113745708-113770716:-|nuORF;nc|ENSG00000089060|Q6J4K2-2|SLC8B1;ENSG00000089060|ENST00000680972|SLC8B1;ENST00000548477.5_1_12:113758555-113770610:-|nuORF ENST00000553238.5_1_12:113745708-113770716:-|nuORF ENST00000553238.5_1_12:113745708-113770716:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.14117431640625 2 427.142692 852.270831 NaN NaN NaN NaN NaN NaN NaN 39.067 1 36.662 36.162 37.162 -2.4049 0 0 0 0.21486 1 6965 6965 0.79363 0.79363 1 5479 1748 3355 3358 5747 5747 -0.16121309658353766 DCLECQLKPM 10 Unmodified _DCLECQLKPM_ 0 0 0 REV__ENSG00000177311|ENST00000321464|ZBTB38 REV__ENSG00000177311|ENST00000321464|ZBTB38 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2620239257812 2 590.26397 1178.51339 NaN NaN NaN NaN NaN NaN NaN 44.311 1 41.521 41.021 42.021 -2.79 0 0 0 2.8426 1 8325 8325 3.8763 3.7043 1 + 5480 18552 3356 3359 5748 5748 -0.06872943969028711 DCLLKIDVY 9 Unmodified _DCLLKIDVY_ 0 0 0 ENST00000502503.1_1_5:93410379-93447342:-|nuORF ENST00000502503.1_1_5:93410379-93447342:-|nuORF ENST00000502503.1_1_5:93410379-93447342:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.260986328125 2 541.283543 1080.55253 0.30044 0.00016263 2.569 0.0013906 2.8694 0.0015532 541.7857435804253 119.41 0.10203 119.41 119.34 119.44 0 4 2 2 0 0 0 0.6329 1 23519 23519 10.824 0.75 1 397530 5481 10627 3357 3360 5749 5749 0.015478476484986459 DCNCHCSCFC 10 Unmodified _DCNCHCSCFC_ 0 0 0 REV__ENST00000472558.6_1_12:6657995-6658223:-|nuORF REV__ENST00000472558.6_1_12:6657995-6658223:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 567.6182861328125 2 567.650132 1133.28571 NaN NaN NaN NaN NaN NaN NaN 165.11 1 160.16 159.66 160.66 -4.9484 0 0 0 2.8426 1 32244 32244 0 0 1 + 5482 22056 3358 3361 5750 5750 -0.2755996844018682 DCNCSCDN 8 Unmodified _DCNCSCDN_ 0 0 0 REV__ENSG00000242120|ENST00000567252|MDFIC2 REV__ENSG00000242120|ENST00000567252|MDFIC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23016357421875 2 437.11222 872.209887 NaN NaN NaN NaN NaN NaN NaN 37.806 1 37.806 37.306 38.306 0 0 0 0 0.2396 1 6998 6998 0.0082765 0.004896 1 + 5483 19791 3359 3362 5751 5751 -0.23132906024466138 DCQSFFCCYE 10 Unmodified _DCQSFFCCYE_ 0 0 0 ENSG00000182256|ENST00000615808|GABRG3 ENSG00000182256|ENST00000615808|GABRG3 ENSG00000182256|ENST00000615808|GABRG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.76708984375 2 622.706485 1243.39842 0.41667 0.00025946 4.109 0.0025587 4.5257 0.0028182 622.7104193765446 159.73 0.21429 154.5 154.3 154.52 -5.2299 6 5 2 0 0 0 0.52989 1 30991 30991 1.9064 1.641 1 1040100 5484 6777 3360 3363 5752 5752 -0.21354673170822025 DCSCGCCWC 9 Unmodified _DCSCGCCWC_ 0 0 0 ENST00000222584.7_1_7:21470186-21470375:+|nuORF ENST00000222584.7_1_7:21470186-21470375:+|nuORF ENST00000222584.7_1_7:21470186-21470375:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2607421875 2 490.115394 978.216235 NaN NaN NaN NaN NaN NaN NaN 114.73 1 110.25 109.75 110.75 -4.4726 0 0 0 0.19635 1 22608 22608 0 0 1 5485 8135 3361 3364 5753 5753 -0.2737442738895197 DCSHWFYTRWK 11 Unmodified _DCSHWFYTRWK_ 0 0 0 ZRANB1|p.R600Pfs*6|1|0.11|ENSG00000019995|chr10:124983576-124983577|-/C|frameshift_variant;ZRANB1|p.A663Gfs*25|1|0.07|ENSG00000019995|chr10:124984850-124984851|-/AGGAATG|frameshift_variant;ENSG00000019995|ENST00000359653|ZRANB1 ZRANB1|p.R600Pfs*6|1|0.11|ENSG00000019995|chr10:124983576-124983577|-/C|frameshift_variant ZRANB1|p.R600Pfs*6|1|0.11|ENSG00000019995|chr10:124983576-124983577|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 510.2430419921875 3 510.231194 1527.67175 NaN NaN NaN NaN NaN NaN NaN 129.36 1 129.36 128.86 129.86 0 0 0 0 0.22632 1 25556 25556 3.0723 1.6171 1 5486 1123 3362 3365 5754 5754 -0.07097565674121142 DCSSTSCC 8 Unmodified _DCSSTSCC_ 0 0 0 REV__nc|ENSG00000205629|Q9UIC8-3|LCMT1 REV__nc|ENSG00000205629|Q9UIC8-3|LCMT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 403.105712890625 2 403.111689 804.208825 NaN NaN NaN NaN NaN NaN NaN 169.3 1 164.37 163.87 164.87 -4.9295 0 0 0 0.21486 1 33421 33421 0 0 1 + 5487 19596 3363 3366 5755 5755 -0.2011112039336922 DCTEDEACSFF 11 Unmodified _DCTEDEACSFF_ 0 0 0 TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;TG|p.E2744Vfs*20|1|0.07|ENSG00000042832|chr8:133134716-133134717|GG/-|frameshift_variant;ENSG00000042832|ENST00000220616|TG TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 634.06103515625 2 633.718104 1265.42165 NaN NaN NaN NaN NaN NaN NaN 169.24 1 169.24 168.74 169.74 0 0 0 0 0.22632 1 34727 34727 0.172 0 1 5488 1205 3364 3367 5756 5756 -0.20043955852520412 DCTSSMSDLG 10 Unmodified _DCTSSMSDLG_ 0 0 0 REV__ENST00000368685.5_1_1:153634113-153634215:+|nuORF REV__ENST00000368685.5_1_1:153634113-153634215:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.4629211425781 3 339.128414 1014.36341 -0.40286 -0.00013662 -1.2327 -0.00041804 -1.6355 -0.00055466 339.1281013328025 49.978 0.38364 47.097 46.941 47.324 -2.8811 14 10 2 0 0 0 0.52989 1 9514 9514 0.26539 0.26201 1 849980 + 5489 20947 3365 3368 5757 5757 -0.14319592707124684 DCTSSMSDLG 10 Unmodified _DCTSSMSDLG_ 0 0 0 REV__ENST00000368685.5_1_1:153634113-153634215:+|nuORF REV__ENST00000368685.5_1_1:153634113-153634215:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 339.128414 1014.36341 -0.022229 -7.5383E-06 -0.92863 -0.00031492 -0.95086 -0.00032246 339.1280464556749 47.037 0.63583 47.037 46.799 47.435 0 -0.076138 0.00023624 NaN 0.26539 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 729310 + 5490 20947 3365 3368 -0.14319592707124684 DCTSSMSDLG 10 Unmodified _DCTSSMSDLG_ 0 0 0 REV__ENST00000368685.5_1_1:153634113-153634215:+|nuORF REV__ENST00000368685.5_1_1:153634113-153634215:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 339.128414 1014.36341 -0.40286 -0.00013662 -1.2327 -0.00041804 -1.6355 -0.00055466 339.1281013328025 49.978 0.38364 47.097 46.941 47.324 -2.8811 -0.016037 -7.3101E-05 NaN 0.26539 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 849980 + 5491 20947 3365 3368 -0.14319592707124684 DCTSSMSDLG 10 Unmodified _DCTSSMSDLG_ 0 0 0 REV__ENST00000368685.5_1_1:153634113-153634215:+|nuORF REV__ENST00000368685.5_1_1:153634113-153634215:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 339.128414 1014.36341 0.038382 1.3016E-05 -1.6451 -0.0005579 -1.6067 -0.00054489 339.1279719466778 50.136 0.56973 47.137 46.833 47.402 -2.999 0.023789 -0.0004927 NaN 0.26539 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 890240 + 5492 20947 3365 3368 -0.14319592707124684 DCTSSMSDLG 10 Unmodified _DCTSSMSDLG_ 0 0 0 REV__ENST00000368685.5_1_1:153634113-153634215:+|nuORF REV__ENST00000368685.5_1_1:153634113-153634215:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 339.128414 1014.36341 -0.75653 -0.00025656 -0.89353 -0.00030302 -1.6501 -0.00055958 339.12820869571715 50.188 0.63929 47.181 46.839 47.479 -3.0068 0.068385 0.00027195 NaN 0.26539 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 597260 + 5493 20947 3365 3368 -0.14319592707124684 DCVFHLPV 8 Unmodified _DCVFHLPV_ 0 0 0 ENST00000478423.6_1_1:5964753-5964852:-|nuORF ENST00000478423.6_1_1:5964753-5964852:-|nuORF ENST00000478423.6_1_1:5964753-5964852:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2502746582031 2 465.231113 928.447674 0.068754 3.1987E-05 0.49567 0.0002306 0.56443 0.00026259 465.2311901885308 75.947 0.54977 72.224 71.897 72.447 -3.7227 20 15 2 0 0 0 8448 1 14414 14414 0.68139 0 1 976460 5494 10319 3366 3369 5758 5758 -0.0194122903741345 DCVRQVSRLQ 10 Unmodified _DCVRQVSRLQ_ 0 0 0 ENSG00000178597|ENST00000319098|PSAPL1 ENSG00000178597|ENST00000319098|PSAPL1 ENSG00000178597|ENST00000319098|PSAPL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2734985351562 2 602.316771 1202.61899 NaN NaN NaN NaN NaN NaN NaN 44.146 1 41.356 40.856 41.856 -2.79 0 0 0 0.22588 1 8288 8288 10.8 0 1 5495 6584 3367 3370 5759 5759 0.02578476263124685 DCYFYPQVSDY 11 Unmodified _DCYFYPQVSDY_ 0 0 0 REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 467.24017333984375 3 467.188549 1398.54382 -0.013649 -6.3767E-06 -1.9248 -0.00089925 -1.9385 -0.00090562 467.1877814936502 96.939 0.45277 92.842 92.595 93.047 -4.0978 19 12 2 0 0 0 0.89074 1 18993 18993 1.4551 0.75745 1 1444100 + 5496 16369 3368 3371 5760 5760 -0.1395117077863688 DCYFYPQVSDY 11 Unmodified _DCYFYPQVSDY_ 0 0 0 REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 467.188549 1398.54382 0.096036 4.4867E-05 -2.4361 -0.0011381 -2.3401 -0.0010933 467.5216236389158 96.858 0.68284 92.623 92.372 93.055 -4.2348 -0.10214 -0.0003617 NaN 1.4551 25 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2060300 + 5497 16369 3368 3371 -0.1395117077863688 DCYFYPQVSDY 11 Unmodified _DCYFYPQVSDY_ 0 0 0 REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 467.188549 1398.54382 -0.040603 -1.8969E-05 -2.1003 -0.00098125 -2.1409 -0.0010002 467.1876756477663 96.631 0.45526 92.711 92.398 92.853 -3.9194 -0.014052 0.00010894 NaN 1.4551 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1374000 + 5498 16369 3368 3371 -0.1395117077863688 DCYNCKHP 8 Unmodified _DCYNCKHP_ 0 0 0 REV__ZBTB26|p.F363Lfs*7|1|0.33|ENSG00000171448|chr9:122918846-122918846|A/-|frameshift_variant REV__ZBTB26|p.F363Lfs*7|1|0.33|ENSG00000171448|chr9:122918846-122918846|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2640075683594 2 490.191662 978.368771 NaN NaN NaN NaN NaN NaN NaN 112.75 1 108.47 107.97 108.97 -4.2725 0 0 0 0.23664 1 21709 21709 3.2813 3.252 1 + 5499 18225 3369 3372 5761 5761 -0.12127824334004345 DCYVEYFR 8 Unmodified _DCYVEYFR_ 0 0 0 REV__DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant REV__DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77490234375 2 547.734217 1093.45388 NaN NaN NaN NaN NaN NaN NaN 18.341 1 17.069 16.569 17.569 -1.2722 0 0 0 0.21486 1 2746 2746 4.756 0 1 + 5500 13710 3370 3373 5762 5762 -0.0891075559654837 DDAVALQITV 10 Unmodified _DDAVALQITV_ 0 0 0 nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3;ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3 nc|ENSG00000108465|Q96JB5-3|CDK5RAP3 nc|ENSG00000108465|Q96JB5-3|CDK5RAP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.271728515625 2 522.782222 1043.54989 -0.25858 -0.00013518 -0.54782 -0.00028639 -0.8064 -0.00042157 522.7830690071759 86.21 0.46563 82.483 82.19 82.655 -3.727 16 12 2 0 0 0 1.1149 1 16882 16882 3.5927 3.5794 1 1476100 5501 2475 3371 3374 5763 5763 0.02985715515183074 DDDCQWQH 8 Unmodified _DDDCQWQH_ 0 0 0 ENSG00000133858|ENST00000378743|ZFC3H1;nc|ENSG00000133858|O60293-2|ZFC3H1;ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant ENSG00000133858|ENST00000378743|ZFC3H1 ENSG00000133858|ENST00000378743|ZFC3H1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6880493164062 2 523.685256 1045.35596 NaN NaN NaN NaN NaN NaN NaN 133.06 1 128.42 127.92 128.92 -4.6399 0 0 0 0.23782 1 26233 26233 0.62683 0 1 5502 3818 3372 3375 5764 5764 -0.16490564192554302 DDDDDEEEIG 10 Unmodified _DDDDDEEEIG_ 0 0 0 REV__nc|ENSG00000083312|Q92973-3|TNPO1 REV__nc|ENSG00000083312|Q92973-3|TNPO1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.323486328125 2 576.19657 1150.37859 NaN NaN NaN NaN NaN NaN NaN 103.15 1 98.826 98.326 99.326 -4.3211 0 0 0 2.8426 1 19754 19754 0.043787 0 1 + 5503 14449 3373 3376 5765 5765 -0.1905873110461016 DDDDDMPHST 10 Unmodified _DDDDDMPHST_ 0 0 0 ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 ENSG00000181191|ENST00000374571|PJA1 ENSG00000181191|ENST00000374571|PJA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 574.2152709960938 2 574.19585 1146.37715 NaN NaN NaN NaN NaN NaN NaN 151.32 1 151.32 150.82 151.82 0 0 0 0 2.8426 1 30301 30301 0.043787 0.030522 1 5504 6713 3374 3377 5766 5766 -0.1901864367437156 DDDDDNDRT 9 Unmodified _DDDDDNDRT_ 0 0 0 SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant;SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6;SENP6|p.F580Lfs*72|2|0.17|ENSG00000112701|chr6:75677142-75677142|T/-|frameshift_variant SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.275634765625 2 540.689246 1079.36394 0.31992 0.00017297 -2.8926 -0.001564 -2.5727 -0.001391 540.6870473182962 137.53 0.14012 132.69 132.59 132.73 -4.84 5 3 2 0 0 0 0.6215 1 26487 26487 0.073264 0.069883 1 771600 5505 2706 3375 3378 5767 5767 -0.17256758462099242 DDDDDNLPQ 9 Unmodified _DDDDDNLPQ_ 0 0 0 ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant;ANKRD40|p.G147Afs*26|2|0.23|ENSG00000154945|chr17:50699737-50699737|C/-|frameshift_variant;ENSG00000154945|ENST00000285243|ANKRD40 ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6981201171875 2 523.699083 1045.38361 NaN NaN NaN NaN NaN NaN NaN 140.75 1 135.88 135.38 136.38 -4.8678 0 0 0 0.23508 1 27144 27144 3.9444 0.3479 1 5506 163 3376 3379 5768 5768 -0.13726382451318386 DDDDDYNPSP 10 Unmodified _DDDDDYNPSP_ 0 0 0 REV__ENSG00000110395|ENST00000264033|CBL REV__ENSG00000110395|ENST00000264033|CBL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3202514648438 2 576.701822 1151.38909 NaN NaN NaN NaN NaN NaN NaN 29.417 1 27.342 26.842 27.842 -2.0743 0 0 0 2.8426 1 5000 5000 0.0013812 0 1 + 5507 15199 3377 3380 5769 5769 -0.18054703659504412 DDDDEEDYDN 10 Unmodified _DDDDEEDYDN_ 0 0 0 CHD1|p.D221dup|1|0.31|ENSG00000153922|chr5:98901004-98901005|-/TCA|inframe_insertion CHD1|p.D221dup|1|0.31|ENSG00000153922|chr5:98901004-98901005|-/TCA|inframe_insertion CHD1|p.D221dup|1|0.31|ENSG00000153922|chr5:98901004-98901005|-/TCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.780029296875 2 622.689109 1243.36367 NaN NaN NaN NaN NaN NaN NaN 14.021 1 12.811 12.311 13.311 -1.2106 0 0 0 0.22588 1 1824 1824 0.40072 0.093686 1 5508 511 3378 3381 5770 5770 -0.24828222972587355 DDDDSDYGSSK 11 Unmodified _DDDDSDYGSSK_ 0 0 0 nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1 nc|ENSG00000069275|Q9H1E3-2|NUCKS1 nc|ENSG00000069275|Q9H1E3-2|NUCKS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2875366210938 2 602.217837 1202.42112 NaN NaN NaN NaN NaN NaN NaN 174.2 1 169.31 168.81 169.81 -4.8916 0 0 0 0.22632 1 34669 34669 0.026206 0 1 5509 1415 3379 3382 5771 5771 -0.1719933597637464 DDDEEMDPE 9 Unmodified _DDDEEMDPE_ 0 0 0 REV__ENSG00000185624|ENST00000331483|P4HB REV__ENSG00000185624|ENST00000331483|P4HB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.787841796875 2 547.676959 1093.33936 NaN NaN NaN NaN NaN NaN NaN 158.98 1 153.7 153.2 154.2 -5.2748 0 0 0 0.19626 1 30859 30859 0.073264 0.069883 1 + 5510 18980 3380 3383 5772 5772 -0.20357154659814114 DDDNDDDSI 9 Unmodified _DDDNDDDSI_ 0 0 0 REV__ENSG00000147174|ENST00000373696|GCNA REV__ENSG00000147174|ENST00000373696|GCNA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 512.2418823242188 2 512.172898 1022.33124 NaN NaN NaN NaN NaN NaN NaN 133.47 1 128.83 128.33 129.33 -4.6399 0 0 0 0.19623 1 26315 26315 0.40827 0.2854 1 + 5511 16924 3381 3384 5773 5773 -0.17902965584937647 DDDPCSDY 8 Unmodified _DDDPCSDY_ 0 0 0 ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB ENSG00000127329|ENST00000334414|PTPRB ENSG00000127329|ENST00000334414|PTPRB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2487487792969 2 465.145098 928.275642 NaN NaN NaN NaN NaN NaN NaN 113.95 1 109.5 109 110 -4.4539 0 0 0 0.21486 1 22452 22452 2.5775 0.27475 1 5512 3471 3382 3385 5774 5774 -0.1913647030625043 DDDPCSDY 8 Unmodified _DDDPCSDY_ 0 0 0 ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB ENSG00000127329|ENST00000334414|PTPRB ENSG00000127329|ENST00000334414|PTPRB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2503356933594 2 465.145098 928.275642 NaN NaN NaN NaN NaN NaN NaN 113.86 1 109.59 109.09 110.09 -4.2725 0 0 0 0.21486 1 21928 21928 2.5775 0.27475 1 5513 3471 3382 3385 5775 5775 -0.1913647030625043 DDDSYSETY 9 Unmodified _DDDSYSETY_ 0 0 0 REV__nc|ENSG00000143748|O15381-5|NVL REV__nc|ENSG00000143748|O15381-5|NVL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7779541015625 2 547.693466 1093.37238 NaN NaN NaN NaN NaN NaN NaN 81.071 1 77.232 76.732 77.732 -3.8392 0 0 0 0.19632 1 15388 15388 0.40827 0 1 + 5514 16747 3383 3386 5776 5776 -0.17057204545449167 DDDVEPITEF 10 Unmodified _DDDVEPITEF_ 0 0 0 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2710571289062 2 590.256234 1178.49791 NaN NaN NaN NaN NaN NaN NaN 148.5 1 143.34 142.84 143.84 -5.1557 0 0 0 2.8426 1 28752 28752 1.9064 1.8771 1 5515 1494 3384 3387 5777 5777 -0.08419492689222352 DDEAPRFG 8 Unmodified _DDEAPRFG_ 0 0 0 REV__CD248|p.E673Gfs*12|1|0.27|ENSG00000174807|chr11:66315010-66315011|-/C|frameshift_variant REV__CD248|p.E673Gfs*12|1|0.27|ENSG00000174807|chr11:66315010-66315011|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7591552734375 2 453.701232 905.38791 NaN NaN NaN NaN NaN NaN NaN 97.754 1 97.754 97.254 98.254 0 0 0 0 0.21486 1 19157 19157 7.9102 0 1 + 5516 13330 3385 3388 5778 5778 -0.06856828447087082 DDEDDEAQQD 10 Unmodified _DDEDDEAQQD_ 0 0 0 REV__nc|ENSG00000188343|A1XBS5-2|CIBAR1 REV__nc|ENSG00000188343|A1XBS5-2|CIBAR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2769165039062 2 590.199644 1178.38473 NaN NaN NaN NaN NaN NaN NaN 119.41 1 119.41 118.91 119.91 0 0 0 0 0.22588 1 23528 23528 5.2969 1.3525 1 + 5517 19143 3386 3389 5779 5779 -0.19732212873077515 DDEDDGFC 8 Unmodified _DDEDDGFC_ 0 0 0 REV__ENST00000593036.4_1_19:541247-541549:+|nuORF REV__ENST00000593036.4_1_19:541247-541549:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2337951660156 2 458.137272 914.259992 NaN NaN NaN NaN NaN NaN NaN 30.197 1 30.197 29.697 30.697 0 0 0 0 0.2396 1 5422 5422 0.30703 0.30703 1 + 5518 14642 3387 3390 5780 5780 -0.20056756823294108 DDEDEEGENE 10 Unmodified _DDEDEEGENE_ 0 0 0 nc|ENSG00000148835|Q15542-2|TAF5;ENSG00000148835|ENST00000369839|TAF5 nc|ENSG00000148835|Q15542-2|TAF5 nc|ENSG00000148835|Q15542-2|TAF5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2569580078125 2 590.691652 1179.36875 NaN NaN NaN NaN NaN NaN NaN 163.36 1 158.57 158.07 159.07 -4.7898 0 0 0 2.8426 1 32561 32561 0.84494 0.57955 1 5519 4762 3388 3391 5781 5781 -0.21375919109959796 DDEEDDDD 8 Unmodified _DDEEDDDD_ 0 0 0 HMGB1|p.E208D|1|0.1|ENSG00000189403|chr13:30461381-30461381|T/A|missense_variant REV__ASCC2|p.R715Efs*40|1|0.04|ENSG00000100325|chr22:29789144-29789144|G/-|frameshift_variant;REV__ENSG00000115053|ENST00000322723|NCL REV__ENSG00000115053|ENST00000322723|NCL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.0940246582031 3 323.093079 966.257409 NaN NaN NaN NaN NaN NaN NaN 6.74 1 5.6954 5.1954 6.1954 -1.0446 0 0 0 0.21486 1 500 500 0.45834 0 1 + 5520 13130;15399 3389 3392 5782 5782 -0.22706933747269886 DDEEDTSAAL 10 Unmodified _DDEEDTSAAL_ 0 0 0 ARHGEF10L|p.S54Afs*12|1|0.24|ENSG00000074964|chr1:17587578-17587578|C/-|frameshift_variant;ARHGEF10L|p.P64Hfs*2|1|0.36|ENSG00000074964|chr1:17587608-17587608|C/-|frameshift_variant;ARHGEF10L|p.F122Sfs*8|1|0.23|ENSG00000074964|chr1:17603521-17603521|T/-|frameshift_variant;ARHGEF10L|p.P650Hfs*34|1|0.39|ENSG00000074964|chr1:17637904-17637904|C/-|frameshift_variant;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L ARHGEF10L|p.S54Afs*12|1|0.24|ENSG00000074964|chr1:17587578-17587578|C/-|frameshift_variant ARHGEF10L|p.S54Afs*12|1|0.24|ENSG00000074964|chr1:17587578-17587578|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.263916015625 2 533.214566 1064.41458 NaN NaN NaN NaN NaN NaN NaN 91.082 1 87.222 86.722 87.722 -3.8595 0 0 0 0.22588 1 17824 17824 6.7232 0.96273 1 5521 207 3390 3393 5783 5783 -0.11505229137083006 DDEPEETKREE 11 Unmodified _DDEPEETKREE_ 0 0 0 CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2395324707031 3 459.531921 1375.57393 0.31513 0.00014481 -1.4498 -0.00066622 -1.1346 -0.00052141 459.86562338567273 37.752 0.45393 37.752 37.473 37.927 0 32 12 4 0 0 0 0.66124 1 7000 7000 0.172 0 1 2565300 5522 360 3391 3394 5784 5784 -0.09883140579722749 DDESLKYLT 9 Unmodified _DDESLKYLT_ 0 0 0 nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2 nc|ENSG00000148426|Q86WR7-2|PROSER2 nc|ENSG00000148426|Q86WR7-2|PROSER2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79150390625 2 542.263862 1082.51317 0.091099 4.94E-05 -0.50678 -0.00027481 -0.41568 -0.00022541 542.2635070733113 76.836 1.2518 73.07 72.678 73.93 -3.7664 124 35 5 0 0 0 0.55979 1 14537 14537 15.847 1.0089 1 109510000 5523 4745 3392 3395 5785 5785 -0.02478581101377131 DDFGECCC 8 Unmodified _DDFGECCC_ 0 0 0 ENSG00000105427|ENST00000222032|CNFN ENSG00000105427|ENST00000222032|CNFN ENSG00000105427|ENST00000222032|CNFN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 446.1199951171875 2 446.119514 890.224475 NaN NaN NaN NaN NaN NaN NaN 165.34 1 165.34 164.84 165.84 0 0 0 0 0.21486 1 33544 33544 0 0 1 5524 2310 3393 3396 5786 5786 -0.22502833876319528 DDFGECCC 8 Unmodified _DDFGECCC_ 0 0 0 ENSG00000105427|ENST00000222032|CNFN ENSG00000105427|ENST00000222032|CNFN ENSG00000105427|ENST00000222032|CNFN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 446.1197204589844 2 446.119514 890.224475 NaN NaN NaN NaN NaN NaN NaN 168.89 1 164.1 163.6 164.6 -4.7898 0 0 0 0.21486 1 34169 34169 0 0 1 5525 2310 3393 3396 5787 5787 -0.22502833876319528 DDFGECCC 8 Unmodified _DDFGECCC_ 0 0 0 ENSG00000105427|ENST00000222032|CNFN ENSG00000105427|ENST00000222032|CNFN ENSG00000105427|ENST00000222032|CNFN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 446.1199951171875 2 446.119514 890.224475 NaN NaN NaN NaN NaN NaN NaN 169.32 1 164.53 164.03 165.03 -4.7898 0 0 0 0.21486 1 34293 34293 0 0 1 5526 2310 3393 3396 5788 5788 -0.22502833876319528 DDFGECCC 8 Unmodified _DDFGECCC_ 0 0 0 ENSG00000105427|ENST00000222032|CNFN ENSG00000105427|ENST00000222032|CNFN ENSG00000105427|ENST00000222032|CNFN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 446.12005615234375 2 446.119514 890.224475 NaN NaN NaN NaN NaN NaN NaN 167.81 1 162.86 162.36 163.36 -4.948 0 0 0 0.21486 1 33046 33046 0 0 1 5527 2310 3393 3396 5789 5789 -0.22502833876319528 DDFGECCC 8 Unmodified _DDFGECCC_ 0 0 0 ENSG00000105427|ENST00000222032|CNFN ENSG00000105427|ENST00000222032|CNFN ENSG00000105427|ENST00000222032|CNFN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 446.1202087402344 2 446.119514 890.224475 NaN NaN NaN NaN NaN NaN NaN 170.05 1 165.12 164.62 165.62 -4.9295 0 0 0 0.21486 1 33610 33610 0 0 1 5528 2310 3393 3396 5790 5790 -0.22502833876319528 DDFVKQKY 8 Unmodified _DDFVKQKY_ 0 0 0 ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;ENST00000490581.6_1_X:51805127-51807590:-|nuORF ENST00000470594.5_1_X:51805328-51809606:-|nuORF ENST00000470594.5_1_X:51805328-51809606:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2648315429688 2 521.763832 1041.51311 -0.2826 -0.00014745 1.0845 0.00056588 0.80194 0.00041842 521.764308021376 75.515 0.69218 72.099 71.781 72.473 -3.4151 50 19 3 0 0 0 8448 1 14682 14682 6.2058 6.2058 1 16190000 5529 5017 3394 3397 5791 5791 -0.00598536310712916 DDGGGGPG 8 Unmodified _DDGGGGPG_ 0 0 0 ENST00000413305.5_1_3:8675424-8686428:-|nuORF ENST00000413305.5_1_3:8675424-8686428:-|nuORF ENST00000413305.5_1_3:8675424-8686428:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.749267578125 1 631.23181 630.224533 1.2034 0.00075962 1.3074 0.00082526 2.5108 0.0015849 631.2292874481715 171.82 0.20969 167.03 166.95 167.16 -4.7898 6 5 2 0 0 0 1.0268 1 34974 34974 0 0 1 6200200 5530 9590 3395 3398 5792 5792 -0.10537006498122992 DDGRIIVKY 9 Unmodified _DDGRIIVKY_ 0 0 0 ENSG00000180346|ENST00000603357|TIGD2 ENSG00000180346|ENST00000603357|TIGD2 ENSG00000180346|ENST00000603357|TIGD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 69.866 1 66.687 66.187 67.187 -3.1796 0 0 0 0.23508 1 13589 13589 10.8 5.9025 1 5531 6669 3396 3399 5793 5793 0.0461712798901317 DDGSSSEIK 9 Unmodified _DDGSSSEIK_ 0 0 0 TECTA|p.D2032Gfs*22|1|0.13|ENSG00000109927|chr11:121187922-121187923|-/G|frameshift_variant;ENSG00000109927|ENST00000392793|TECTA TECTA|p.D2032Gfs*22|1|0.13|ENSG00000109927|chr11:121187922-121187923|-/G|frameshift_variant TECTA|p.D2032Gfs*22|1|0.13|ENSG00000109927|chr11:121187922-121187923|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.14093017578125 3 313.141816 936.40362 NaN NaN NaN NaN NaN NaN NaN 42.508 1 39.902 39.402 40.402 -2.606 0 0 0 0.23508 1 7648 7648 4.897 0.36815 1 5532 2549 3397 3400 5794 5794 -0.06712586720698255 DDIAKAIAY 9 Unmodified _DDIAKAIAY_ 0 0 0 REV__nc|ENSG00000021826|P31327-3|CPS1 REV__nc|ENSG00000021826|P31327-3|CPS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25927734375 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 89.756 1 85.897 85.397 86.397 -3.8595 0 0 0 0.19684 1 17561 17561 7.4771 7.2117 1 + 5533 13987 3398 3401 5795 5795 0.012100613149868877 DDISYVLPEH 10 Unmodified _DDISYVLPEH_ 0 0 0 nc|ENSG00000131473|P53396-3|ACLY;nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.M1099T|1|0.37|ENSG00000131473|chr17:41867820-41867820|A/G|missense_variant;ENST00000588779.1_1_17:40024065-40026676:-|nuORF nc|ENSG00000131473|P53396-3|ACLY nc|ENSG00000131473|P53396-3|ACLY MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 594.3512573242188 2 594.282586 1186.55062 0.58123 0.00034541 -1.25 -0.00074282 -0.66872 -0.00039741 594.7829806651696 68.89 0.21007 65.71 65.518 65.728 -3.1796 8 5 2 0 0 0 0.90091 1 13361 13361 6.2058 0 1 1680000 5534 3679 3399 3402 5796 5796 -0.0351948983575312 DDISYVLPEH 10 Unmodified _DDISYVLPEH_ 0 0 0 nc|ENSG00000131473|P53396-3|ACLY;nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.M1099T|1|0.37|ENSG00000131473|chr17:41867820-41867820|A/G|missense_variant;ENST00000588779.1_1_17:40024065-40026676:-|nuORF nc|ENSG00000131473|P53396-3|ACLY nc|ENSG00000131473|P53396-3|ACLY MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 594.282586 1186.55062 0.74625 0.00044348 -0.4148 -0.00024651 0.33145 0.00019698 594.2824508368418 69.205 0.18785 65.669 65.575 65.763 -3.5362 -0.020556 0.00033636 NaN 6.2058 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1031800 5535 3679 3399 3402 -0.0351948983575312 DDLDRIPRS 9 Unmodified _DDLDRIPRS_ 0 0 0 REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7821655273438 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 150.36 1 145.16 144.66 145.66 -5.1994 0 0 0 0.23508 1 29136 29136 12.241 2.1667 1 + 5536 13715 3400 3403 5797 5797 0.0071846546118194965 DDLEATMEY 9 Unmodified _DDLEATMEY_ 0 0 0 REV__ENST00000480001.5_1_3:25470222-25636040:+|nuORF REV__ENST00000480001.5_1_3:25470222-25636040:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.782470703125 2 543.71843 1085.42231 NaN NaN NaN NaN NaN NaN NaN 131.66 1 126.81 126.31 127.31 -4.8527 0 0 0 0.19684 1 25287 25287 1.2148 0.588 1 + 5537 14357 3401 3404 5798 5798 -0.11698793141135866 DDLHVERY 8 Unmodified _DDLHVERY_ 0 0 0 ENSG00000162910|ENST00000336520|MRPL55;nc|ENSG00000162910|Q7Z7F7-2|MRPL55 ENSG00000162910|ENST00000336520|MRPL55 ENSG00000162910|ENST00000336520|MRPL55 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7003173828125 2 523.748713 1045.48287 0.42983 0.00022512 0.19918 0.00010432 0.629 0.00032944 523.7488559191567 43.3 0.51441 43.3 42.987 43.501 0 27 14 2 0 0 0 0.17909 1 8108 8108 61.602 38.866 1 4098000 5538 5381 3402 3405 5799 5799 -0.03804894975883144 DDLHVERY 8 Unmodified _DDLHVERY_ 0 0 0 ENSG00000162910|ENST00000336520|MRPL55;nc|ENSG00000162910|Q7Z7F7-2|MRPL55 ENSG00000162910|ENST00000336520|MRPL55 ENSG00000162910|ENST00000336520|MRPL55 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6998291015625 2 523.748713 1045.48287 -0.56164 -0.00029416 1.4091 0.00073802 0.84747 0.00044386 523.7495881281136 46.311 0.6593 43.446 43.067 43.726 -2.8653 24 16 2 0 0 0 0.45962 1 8403 8403 29.841 13.993 1 2253000 5539 5381 3402 3405 5800 5800 -0.03804894975883144 DDLKVSEL 8 Unmodified _DDLKVSEL_ 0 0 0 MYOCD|p.S481Pfs*18|2|0.35|ENSG00000141052|chr17:12752724-12752724|C/-|frameshift_variant;MYOCD|p.P457Rfs*42|2|0.26|ENSG00000141052|chr17:12752653-12752653|C/-|frameshift_variant;nc|ENSG00000141052|Q8IZQ8-2|MYOCD;MYOCD|p.Q636Sfs*59|1|0.39|ENSG00000141052|chr17:12753188-12753189|-/C|frameshift_variant;nc|ENSG00000141052|Q8IZQ8|MYOCD;ENSG00000141052|ENST00000425538|MYOCD;nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB MYOCD|p.S481Pfs*18|2|0.35|ENSG00000141052|chr17:12752724-12752724|C/-|frameshift_variant;nc|ENSG00000186260|Q9ULH7-4|MRTFB MYOCD|p.S481Pfs*18|2|0.35|ENSG00000141052|chr17:12752724-12752724|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2352600097656 2 459.742565 917.470577 0.28602 0.0001315 -0.77584 -0.00035668 -0.48981 -0.00022519 459.74203234040317 87.914 0.66913 83.919 83.447 84.116 -3.9953 22 18 2 0 0 0 0.78482 1 16733 16733 32.305 0 1 940400 5540 4345;7048 3403 3406 5801 5801 0.008540685610569199 DDLLEWEER 9 Unmodified _DDLLEWEER_ 0 0 0 REV__ENST00000594803.1_1_19:58233776-58238980:-|nuORF REV__ENST00000594803.1_1_19:58233776-58238980:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2999877929688 2 602.777667 1203.54078 1.0589 0.00063829 2.264 0.0013647 3.3229 0.002003 602.7791691260502 128.35 0.29382 123.72 123.58 123.87 -4.6292 11 7 2 0 0 0 0.74655 1 25327 25327 21.747 0.20967 1 729600 + 5541 14459 3404 3407 5802 5802 -0.05284677841154917 DDLLVVEKY 9 Unmodified _DDLLVVEKY_ 0 0 0 nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant;MYOF|p.G944Afs*24|1|0.38|ENSG00000138119|chr10:93363998-93363998|C/-|frameshift_variant nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7931518554688 2 547.292422 1092.57029 0.32033 0.00017532 -0.10114 -5.5354E-05 0.21919 0.00011996 547.2923368445577 117.9 0.70885 117.9 117.51 118.22 0 31 19 2 0 0 0 0.076312 1 23190 23190 67.838 29.864 1 7861400 5542 4153 3405 3408 5803 5803 0.0277088617501704 DDLLVVEKY 9 Unmodified _DDLLVVEKY_ 0 0 0 nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant;MYOF|p.G944Afs*24|1|0.38|ENSG00000138119|chr10:93363998-93363998|C/-|frameshift_variant nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.777587890625 2 547.292422 1092.57029 0.40611 0.00022226 -0.23136 -0.00012662 0.17475 9.5638E-05 547.2921148829469 122.39 0.6731 117.84 117.53 118.2 -4.5476 34 18 2 0 0 0 0.39629 1 24062 24062 33.445 14.188 1 5065800 5543 4153 3405 3408 5804 5804 0.0277088617501704 DDLLVVEKY 9 Unmodified _DDLLVVEKY_ 0 0 0 nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant;MYOF|p.G944Afs*24|1|0.38|ENSG00000138119|chr10:93363998-93363998|C/-|frameshift_variant nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.784423828125 2 547.292422 1092.57029 0.53048 0.00029033 -0.57006 -0.00031199 -0.039578 -2.1661E-05 547.2920335973796 122.7 0.85848 117.97 117.43 118.29 -4.731 43 24 2 0 0 0 0.058839 5 23524 23487;23496;23524;23577;23595 86.332 77.439 1 4776800 5544 4153 3405 3408 5805;5806;5807;5808;5809 5807 0.0277088617501704 DDLPIWGI 8 Unmodified _DDLPIWGI_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3;TM9SF3|p.F404Lfs*6|3|0.31|ENSG00000077147|chr10:96533164-96533164|A/-|frameshift_variant ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16351318359375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 150.05 1 144.85 144.35 145.35 -5.1994 0 0 0 0.23837 1 29071 29071 0.62683 0 1 5545 1552 3406 3409 5810 5810 0.003546936318457483 DDLRYIQRDSY 11 Unmodified _DDLRYIQRDSY_ 0 0 0 REV__ABCC11|p.L656R|1|0.23|ENSG00000121270|chr16:48200391-48200391|A/C|missense_variant REV__ABCC11|p.L656R|1|0.23|ENSG00000121270|chr16:48200391-48200391|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78717041015625 3 481.900279 1442.67901 -0.040632 -1.958E-05 2.0589 0.00099219 2.0183 0.00097261 482.23480916234575 69.419 0.53748 66.239 65.974 66.511 -3.1796 20 14 2 0 0 0 0.96129 1 13484 13484 6.2344 5.0195 1 2161200 + 5546 12899 3407 3410 5811 5811 -0.0246255459267104 DDLTRVNP 8 Unmodified _DDLTRVNP_ 0 0 0 nc|ENSG00000278259|Q96H55-2|MYO19;nc|ENSG00000278259|Q96H55-3|MYO19;nc|ENSG00000278259|Q96H55-4|MYO19;ENSG00000278259|ENST00000614623|MYO19 nc|ENSG00000278259|Q96H55-2|MYO19 nc|ENSG00000278259|Q96H55-2|MYO19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.23846435546875 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 166.29 1 166.29 165.79 166.79 0 0 0 0 0.21292 1 33855 33855 14.838 1.2234 1 5547 8041 3408 3411 5812 5812 -0.005682800046201919 DDLVYYDNY 9 Unmodified _DDLVYYDNY_ 0 0 0 REV__ENST00000564733.1_1_16:21666528-21666750:+|nuORF REV__ENST00000564733.1_1_16:21666528-21666750:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2666625976562 2 590.245669 1178.47678 NaN NaN NaN NaN NaN NaN NaN 103.83 1 99.614 99.114 100.11 -4.2183 0 0 0 0.19656 1 20415 20415 0.073264 0 1 + 5548 19296 3409 3412 5813 5813 -0.10531457998104088 DDMDPTPE 8 Unmodified _DDMDPTPE_ 0 0 0 ENSG00000184619|ENST00000396267|KRBA2;nc|ENSG00000184619|Q6ZNG9|KRBA2 ENSG00000184619|ENST00000396267|KRBA2 ENSG00000184619|ENST00000396267|KRBA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24041748046875 2 460.171115 918.327678 0.28997 0.00013344 0.7766 0.00035737 1.0666 0.0004908 460.1714061643634 97.508 1.0728 97.508 97.084 98.157 0 48 30 2 0 0 0 0.66265 2 19075 19071;19075 18.135 4.6271 1 3209100 5549 6926 3410 3413 5814;5815 5815 -0.1347530689248515 DDNEYIDY 8 Unmodified _DDNEYIDY_ 0 0 0 tr|U7SEN4|U7SEN4_FUSNUGlutamate-1-semialdehyde2,1-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemLPE=3SV=1 tr|U7SEN4|U7SEN4_FUSNUGlutamate-1-semialdehyde2,1-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemLPE=3SV=1 tr|U7SEN4|U7SEN4_FUSNUGlutamate-1-semialdehyde2,1-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemLPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6910400390625 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 118.2 1 113.7 113.2 114.2 -4.502 0 0 0 0.21486 1 23301 23301 9.3474 0.75416 1 5550 25881 3411 3414 5816 5816 -0.13324292957599937 DDRGITLKY 9 Unmodified _DDRGITLKY_ 0 0 0 REV__ENSG00000198960|ENST00000361910|ARMCX6 REV__ENSG00000198960|ENST00000361910|ARMCX6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2843627929688 2 540.787838 1079.56112 0.18733 0.0001013 -0.10858 -5.8717E-05 0.07875 4.2587E-05 540.7877912941657 37.002 0.34091 34.654 34.482 34.823 -2.3479 13 9 2 0 0 0 0.60061 1 6536 6536 13.042 0 1 521680 + 5551 19491 3412 3415 5817 5817 0.024525376093151863 DDRRRPWERQR 11 Unmodified _DDRRRPWERQR_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.410400390625 2 785.408903 1568.80325 NaN NaN NaN NaN NaN NaN NaN 43.291 1 43.291 42.791 43.791 0 0 0 0 0.23698 1 8109 8109 0.96228 0.61164 1 5552 12588 3413 3416 5818 5818 0.04160380738017011 DDTPHAAKT 9 Unmodified _DDTPHAAKT_ 0 0 0 REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.1495056152344 3 319.154168 954.440674 NaN NaN NaN NaN NaN NaN NaN 71.713 1 71.713 71.213 72.213 0 0 0 0 0.23508 1 13897 13897 0.96228 0 1 + 5553 14529 3414 3417 5819 5819 -0.03836870384282065 DDTPHAAKT 9 Unmodified _DDTPHAAKT_ 0 0 0 REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.0320739746094 3 319.154168 954.440674 NaN NaN NaN NaN NaN NaN NaN 85.744 1 82.08 81.58 82.58 -3.6641 0 0 0 0.23508 1 16763 16763 0.96228 0 1 + 5554 14529 3414 3417 5820 5820 -0.03836870384282065 DDTPHAAKT 9 Unmodified _DDTPHAAKT_ 0 0 0 REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.16986083984375 3 319.154168 954.440674 NaN NaN NaN NaN NaN NaN NaN 90.518 1 86.658 86.158 87.158 -3.8595 0 0 0 0.23508 1 17709 17709 0.96228 0 1 + 5555 14529 3414 3417 5821 5821 -0.03836870384282065 DDTPHAAKT 9 Unmodified _DDTPHAAKT_ 0 0 0 REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.2013244628906 3 319.154168 954.440674 NaN NaN NaN NaN NaN NaN NaN 86.754 1 83.025 82.525 83.525 -3.7289 0 0 0 0.23508 1 16594 16594 0.96228 0 1 + 5556 14529 3414 3417 5822 5822 -0.03836870384282065 DDVKVVEKY 9 Unmodified _DDVKVVEKY_ 0 0 0 UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant;ENST00000466379.1_1_1:10189503-10195243:+|nuORF;nc|ENSG00000130939|O95155-3|UBE4B;UBE4B|p.L1117Ffs*8|1|0.36|ENSG00000130939|chr1:10171152-10171153|-/T|frameshift_variant;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7879638671875 2 547.790047 1093.56554 0.55464 0.00030383 -2.6674 -0.0014612 -2.1127 -0.0011573 547.7877507840553 42.534 0.66458 42.534 42.183 42.847 0 27 18 2 0 0 0 0.5354 1 7976 7976 17.443 5.8023 1 1704800 5557 26545 3415 3418 5823 5823 0.022500020322468117 DDVKVVEKY 9 Unmodified _DDVKVVEKY_ 0 0 0 UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant;ENST00000466379.1_1_1:10189503-10195243:+|nuORF;nc|ENSG00000130939|O95155-3|UBE4B;UBE4B|p.L1117Ffs*8|1|0.36|ENSG00000130939|chr1:10171152-10171153|-/T|frameshift_variant;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.789306640625 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 45.522 1 42.681 42.181 43.181 -2.8409 0 0 0 0.072437 1 8576 8576 43.477 21.887 1 5558 26545 3415 3418 5824 5824 0.022500020322468117 DDVKVVEKY 9 Unmodified _DDVKVVEKY_ 0 0 0 UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant;ENST00000466379.1_1_1:10189503-10195243:+|nuORF;nc|ENSG00000130939|O95155-3|UBE4B;UBE4B|p.L1117Ffs*8|1|0.36|ENSG00000130939|chr1:10171152-10171153|-/T|frameshift_variant;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7678833007812 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 45.643 1 42.802 42.302 43.302 -2.8409 0 0 0 0.075887 1 8603 8603 42.835 23.473 1 5559 26545 3415 3418 5825 5825 0.022500020322468117 DDVKVVEKY 9 Unmodified _DDVKVVEKY_ 0 0 0 UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant;ENST00000466379.1_1_1:10189503-10195243:+|nuORF;nc|ENSG00000130939|O95155-3|UBE4B;UBE4B|p.L1117Ffs*8|1|0.36|ENSG00000130939|chr1:10171152-10171153|-/T|frameshift_variant;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7891845703125 2 547.790047 1093.56554 0.0076924 4.2138E-06 1.5687 0.00085931 1.5764 0.00086352 547.7910157206702 45.655 0.41319 42.789 42.588 43.001 -2.8653 16 11 2 0 0 0 0.52027 1 8275 8275 18.373 8.99 1 1404200 5560 26545 3415 3418 5826 5826 0.022500020322468117 DDVKVVEKY 9 Unmodified _DDVKVVEKY_ 0 0 0 UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant;ENST00000466379.1_1_1:10189503-10195243:+|nuORF;nc|ENSG00000130939|O95155-3|UBE4B;UBE4B|p.L1117Ffs*8|1|0.36|ENSG00000130939|chr1:10171152-10171153|-/T|frameshift_variant;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7876586914062 2 547.790047 1093.56554 -0.029903 -1.638E-05 -2.1708 -0.0011892 -2.2007 -0.0012055 547.7881424056203 45.716 0.84285 42.85 42.12 42.963 -2.8666 33 23 2 0 0 0 0.23083 1 8274 8274 35.612 15.198 1 1415900 5561 26545 3415 3418 5827 5827 0.022500020322468117 DDYYYYDY 8 Unmodified _DDYYYYDY_ 0 0 0 REV__COL24A1|p.E476D|1|0.14|ENSG00000171502|chr1:86124908-86124908|C/G|missense_variant REV__COL24A1|p.E476D|1|0.14|ENSG00000171502|chr1:86124908-86124908|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2590942382812 2 590.211295 1178.40804 NaN NaN NaN NaN NaN NaN NaN 57.033 1 53.844 53.344 54.344 -3.1895 0 0 0 0.2396 1 10582 10582 0.12286 0 1 + 5562 13483 3416 3419 5828 5828 -0.17403122297810114 DEAAFLERL 9 Unmodified _DEAAFLERL_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2774047851562 2 532.274564 1062.53457 0.09344 4.9736E-05 0.16562 8.8155E-05 0.25906 0.00013789 532.2746241277933 148.44 0.83252 148.44 147.99 148.82 0 83 23 4 0 0 0 0.022938 3 29682 29682;29760;29781 89.401 56.615 1 107210000 5563 367 3417 3420 5829;5830;5831 5829 0.00580848718004745 DEAAFLERL 9 Unmodified _DEAAFLERL_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2780151367188 2 532.274564 1062.53457 0.18739 9.9742E-05 1.5839 0.00084307 1.7713 0.00094282 532.2754521536051 153.24 1.1453 148.47 147.9 149.05 -4.7684 108 31 5 0 0 0 0.15128 1 30524 30524 43.982 14.9 1 119930000 5564 367 3417 3420 5832 5832 0.00580848718004745 DEAAFLERL 9 Unmodified _DEAAFLERL_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.277587890625 2 532.274564 1062.53457 0.52097 0.0002773 1.3981 0.00074417 1.9191 0.0010215 532.2753668562095 153.79 1.0747 148.52 148.09 149.17 -5.2669 106 30 4 0 0 0 0.010532 4 29796 29746;29796;29833;29846 103.35 63.404 1 98964000 5565 367 3417 3420 5833;5834;5835;5836 5834 0.00580848718004745 DEAAFLERL 9 Unmodified _DEAAFLERL_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2774658203125 2 532.274564 1062.53457 0.43643 0.0002323 0.63403 0.00033748 1.0705 0.00056978 532.2749466266173 153.69 1.139 148.47 148 149.14 -5.2209 103 32 4 0 0 0 0.012534 2 29783 29783;29827 99.755 57.916 1 105290000 5566 367 3417 3420 5837;5838 5837 0.00580848718004745 DEAAFQKL 8 Unmodified _DEAAFQKL_ 0 0 0 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5429992675781 2 461.23745 920.460347 0.32016 0.00014767 -0.077498 -3.5745E-05 0.24266 0.00011192 461.23740466458287 74.738 0.4575 74.738 74.463 74.921 0 20 12 2 0 0 0 0.17453 2 14534 14491;14534 48.346 19.859 1 1897300 5567 7236 3418 3421 5839;5840 5840 -0.003064943735239467 DEAAFQKL 8 Unmodified _DEAAFQKL_ 0 0 0 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.23745 920.460347 -0.076903 -3.5471E-05 0.39597 0.00018263 0.31906 0.00014716 461.2375978174434 78.07 0.6067 74.606 74.287 74.894 -3.4633 -0.061458 9.5801E-05 NaN 48.346 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2968400 5568 7236 3418 3421 -0.003064943735239467 DEAAFQKL 8 Unmodified _DEAAFQKL_ 0 0 0 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.23745 920.460347 -0.058054 -2.6777E-05 0.35269 0.00016268 0.29464 0.0001359 461.2376101232131 78.416 0.56107 74.649 74.353 74.914 -3.7664 -0.018369 5.5882E-05 NaN 48.346 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2866000 5569 7236 3418 3421 -0.003064943735239467 DEAAFQKL 8 Unmodified _DEAAFQKL_ 0 0 0 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.23745 920.460347 0.0083064 3.8312E-06 0.32849 0.00015151 0.3368 0.00015534 461.2375955843533 78.336 0.77783 74.678 74.2 74.978 -3.6588 0.0098779 3.3557E-05 NaN 48.346 33 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2702800 5570 7236 3418 3421 -0.003064943735239467 DEAAYIWKV 9 Unmodified _DEAAYIWKV_ 0 0 0 ENSG00000143476|ENST00000366991|DTL;DTL|p.I387Sfs*4|1|0.34|ENSG00000143476|chr1:212080644-212080644|A/-|frameshift_variant ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7756958007812 2 547.779482 1093.54441 0.32956 0.00018052 0.38832 0.00021271 0.71787 0.00039324 547.7792983349 136.35 0.55869 136.35 136.24 136.8 0 26 15 2 0 0 0 0.050568 5 26999 26999;27003;27056;27069;27097 56.177 33.083 1 4540500 5571 4494 3419 3422 5841;5842;5843;5844;5845 5841 0.0013803672338781325 DEAAYIWKV 9 Unmodified _DEAAYIWKV_ 0 0 0 ENSG00000143476|ENST00000366991|DTL;DTL|p.I387Sfs*4|1|0.34|ENSG00000143476|chr1:212080644-212080644|A/-|frameshift_variant ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7803344726562 2 547.779482 1093.54441 0.23538 0.00012894 -0.25114 -0.00013757 -0.015757 -8.6316E-06 547.7796817692642 141.35 0.58592 136.7 136.33 136.92 -4.6493 34 16 3 0 0 0 0.12505 4 27908 27857;27887;27908;27939 47.749 22.758 1 2678000 5572 4494 3419 3422 5846;5847;5848;5849 5848 0.0013803672338781325 DEAAYIWKV 9 Unmodified _DEAAYIWKV_ 0 0 0 ENSG00000143476|ENST00000366991|DTL;DTL|p.I387Sfs*4|1|0.34|ENSG00000143476|chr1:212080644-212080644|A/-|frameshift_variant ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7748413085938 2 547.779482 1093.54441 0.11281 6.1797E-05 0.93507 0.00051221 1.0479 0.00057401 548.2810169224508 141.43 0.56308 136.44 136.34 136.91 -4.9877 32 15 3 0 0 0 0.050568 4 27230 27230;27244;27275;27314 47.749 41.351 1 2806100 5573 4494 3419 3422 5850;5851;5852;5853 5850 0.0013803672338781325 DEAAYIWKV 9 Unmodified _DEAAYIWKV_ 0 0 0 ENSG00000143476|ENST00000366991|DTL;DTL|p.I387Sfs*4|1|0.34|ENSG00000143476|chr1:212080644-212080644|A/-|frameshift_variant ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.780029296875 2 547.779482 1093.54441 0.34907 0.00019121 -0.24114 -0.00013209 0.10793 5.9122E-05 547.7796671507286 141.44 0.66808 136.57 136.15 136.82 -4.8678 29 18 2 0 0 0 0.12505 3 27274 27229;27274;27323 47.749 41.84 1 2777700 5574 4494 3419 3422 5854;5855;5856 5855 0.0013803672338781325 DEADDKTY 8 Unmodified _DEADDKTY_ 0 0 0 CLDND1|p.E61D|1|0.27|ENSG00000080822|chr3:98521242-98521242|T/G|missense_variant CLDND1|p.E61D|1|0.27|ENSG00000080822|chr3:98521242-98521242|T/G|missense_variant CLDND1|p.E61D|1|0.27|ENSG00000080822|chr3:98521242-98521242|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72357177734375 2 478.695812 955.377071 0.023481 1.124E-05 -0.8215 -0.00039325 -0.79802 -0.00038201 478.6951912817343 49.381 0.23962 46.382 46.207 46.447 -2.999 9 6 2 0 0 0 1.0147 1 8999 8999 5.2307 0 1 457550 5575 573 3420 3423 5857 5857 -0.10240275612034111 DEAEVHLKF 9 Unmodified _DEAEVHLKF_ 0 0 0 GAS7|p.A283V|1|0.14|ENSG00000007237|chr17:9934203-9934203|G/A|missense_variant;nc|ENSG00000007237|O60861-2|GAS7;nc|ENSG00000007237|O60861-1|GAS7;nc|ENSG00000007237|O60861-4|GAS7;ENSG00000007237|ENST00000432992|GAS7 GAS7|p.A283V|1|0.14|ENSG00000007237|chr17:9934203-9934203|G/A|missense_variant GAS7|p.A283V|1|0.14|ENSG00000007237|chr17:9934203-9934203|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7695922851562 2 544.274564 1086.53457 0.13577 7.3896E-05 0.51355 0.00027951 0.64932 0.00035341 544.2748742118937 92.019 0.60608 92.019 91.659 92.265 0 29 16 2 0 0 0 0.13841 1 17963 17963 63.961 34.879 1 1820600 5576 1018 3421 3424 5858 5858 -0.005231512819818818 DEAEVHLKF 9 Unmodified _DEAEVHLKF_ 0 0 0 GAS7|p.A283V|1|0.14|ENSG00000007237|chr17:9934203-9934203|G/A|missense_variant;nc|ENSG00000007237|O60861-2|GAS7;nc|ENSG00000007237|O60861-1|GAS7;nc|ENSG00000007237|O60861-4|GAS7;ENSG00000007237|ENST00000432992|GAS7 GAS7|p.A283V|1|0.14|ENSG00000007237|chr17:9934203-9934203|G/A|missense_variant GAS7|p.A283V|1|0.14|ENSG00000007237|chr17:9934203-9934203|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7938842773438 2 544.274564 1086.53457 0.13692 7.4521E-05 0.40508 0.00022047 0.54199 0.00029499 544.7764686067119 96.189 0.79808 91.954 91.433 92.231 -4.2348 35 22 2 0 0 0 0.31673 1 18275 18275 47.749 13.347 1 1873600 5577 1018 3421 3424 5859 5859 -0.005231512819818818 DEAGGPAPAAT 11 Unmodified _DEAGGPAPAAT_ 0 0 0 REV__ENST00000566963.1_1_16:77225382-77227709:+|nuORF REV__ENST00000566963.1_1_16:77225382-77227709:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7340087890625 2 478.719621 955.42469 0.14084 6.7425E-05 0.094219 4.5104E-05 0.23506 0.00011253 478.71962361364757 35.845 0.86861 33.592 33.019 33.888 -2.2527 41 24 3 0 0 0 0.43921 1 6249 6249 26.268 11.43 1 2487700 + 5578 14865 3422 3425 5860 5860 -0.05480576621198452 DEAIGVRHF 9 Unmodified _DEAIGVRHF_ 0 0 0 nc|ENSG00000181982|Q6ZUS6-6|CCDC149;nc|ENSG00000181982|Q6ZUS6|CCDC149;nc|ENSG00000181982|Q6ZUS6-5|CCDC149;nc|ENSG00000181982|Q6ZUS6-4|CCDC149;ENSG00000181982|ENST00000635206|CCDC149;ENST00000324309.8_1_4:24833126-24981729:-|nuORF;nc|ENSG00000181982|Q6ZUS6-2|CCDC149 nc|ENSG00000181982|Q6ZUS6-6|CCDC149 nc|ENSG00000181982|Q6ZUS6-6|CCDC149 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2623901367188 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 135.03 1 135.03 134.53 135.53 0 0 0 0 0.23508 1 26740 26740 11.64 2.2929 1 5579 6755 3423 3426 5861 5861 3.401640651645721E-05 DEAILRGGV 9 Unmodified _DEAILRGGV_ 0 0 0 REV__FMN2|p.P158L|1|0.07|ENSG00000155816|chr1:240092582-240092582|C/T|missense_variant REV__FMN2|p.P158L|1|0.07|ENSG00000155816|chr1:240092582-240092582|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25592041015625 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 74.63 1 74.63 74.13 75.13 0 0 0 0 0.21469 1 14489 14489 19.257 0 1 + 5580 23540 3424 3427 5862 5862 0.030685968921034146 DEAILRGGV 9 Unmodified _DEAILRGGV_ 0 0 0 REV__FMN2|p.P158L|1|0.07|ENSG00000155816|chr1:240092582-240092582|C/T|missense_variant REV__FMN2|p.P158L|1|0.07|ENSG00000155816|chr1:240092582-240092582|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2566223144531 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 74.842 1 74.842 74.342 75.342 0 0 0 0 0.13613 1 14532 14532 32.305 2.0807 1 + 5581 23540 3424 3427 5863 5863 0.030685968921034146 DEAILRGGV 9 Unmodified _DEAILRGGV_ 0 0 0 REV__FMN2|p.P158L|1|0.07|ENSG00000155816|chr1:240092582-240092582|C/T|missense_variant REV__FMN2|p.P158L|1|0.07|ENSG00000155816|chr1:240092582-240092582|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2567443847656 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 78.443 1 74.676 74.176 75.176 -3.7664 0 0 0 0.17061 1 14876 14876 27.629 4.8925 1 + 5582 23540 3424 3427 5864 5864 0.030685968921034146 DEAILRGGV 9 Unmodified _DEAILRGGV_ 0 0 0 REV__FMN2|p.P158L|1|0.07|ENSG00000155816|chr1:240092582-240092582|C/T|missense_variant REV__FMN2|p.P158L|1|0.07|ENSG00000155816|chr1:240092582-240092582|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2567443847656 2 465.256174 928.497795 0.0036641 1.7047E-06 0.042338 1.9698E-05 0.046002 2.1403E-05 465.2566791123099 78.33 0.38959 74.671 74.551 74.941 -3.6588 15 10 2 0 0 0 0.25183 2 14927 14927;14933 34.402 11.665 1 509350 + 5583 23540 3424 3427 5865;5866 5865 0.030685968921034146 DEAKAEVL 8 Unmodified _DEAKAEVL_ 0 0 0 ENSG00000162377|ENST00000371538|COA7 ENSG00000162377|ENST00000371538|COA7 ENSG00000162377|ENST00000371538|COA7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21697998046875 2 437.729458 873.444362 -0.073628 -3.2229E-05 0.33884 0.00014832 0.26522 0.00011609 437.7294970668039 44.359 0.54882 41.593 41.286 41.835 -2.7661 23 15 2 0 0 0 0.93121 1 8030 8030 21.537 3.3906 1 715990 5584 5325 3425 3428 5867 5867 0.0025779938957839477 DEAKAEVL 8 Unmodified _DEAKAEVL_ 0 0 0 ENSG00000162377|ENST00000371538|COA7 ENSG00000162377|ENST00000371538|COA7 ENSG00000162377|ENST00000371538|COA7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2196044921875 2 437.729458 873.444362 -0.2501 -0.00010948 0.32122 0.00014061 0.071113 3.1128E-05 437.7295927172477 44.275 0.66315 41.527 41.291 41.954 -2.7475 22 18 2 0 0 0 0.94768 1 7985 7985 24.021 9.1823 1 738940 5585 5325 3425 3428 5868 5868 0.0025779938957839477 DEAKIKTSPG 10 Unmodified _DEAKIKTSPG_ 0 0 0 REV__nc|ENSG00000028277|P09086-5|POU2F2 REV__nc|ENSG00000028277|P09086-5|POU2F2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.69287109375 2 523.279846 1044.54514 0.22062 0.00011545 0.23247 0.00012165 0.45309 0.00023709 523.2798402900055 90.243 0.66703 86.466 86.044 86.711 -3.7779 39 18 3 0 0 0 0.78938 1 17304 17304 11.495 0 1 2052300 + 5586 23932 3426 3429 5869 5869 0.02464831372435583 DEAKLIAV 8 Unmodified _DEAKLIAV_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 430.7398986816406 2 429.750193 857.485833 -0.010434 -4.4838E-06 -0.01087 -4.6714E-06 -0.021304 -9.1552E-06 429.7501010194519 89.524 0.91235 89.524 89.103 90.015 0 60 25 3 0 0 0 8448 1 17530 17530 28.46 13.622 1 16374000 5587 565 3427 3430 5870 5870 0.05138980148910832 DEAKLIQNL 9 Unmodified _DEAKLIQNL_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2660522460938 2 522.290214 1042.56587 0.36935 0.00019291 -0.050049 -2.614E-05 0.31931 0.00016677 522.2901305793827 107.72 1.206 107.72 106.93 108.14 0 85 34 4 0 0 0 0.00016281 1 21143 21143 122.18 10.892 1 13831000 5588 3544 3428 3431 5871 5871 0.04629421752088092 DEAKLIQNL 9 Unmodified _DEAKLIQNL_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2804565429688 2 522.290214 1042.56587 -0.46516 -0.00024295 0.57544 0.00030055 0.11028 5.7597E-05 522.2905709503507 112.16 1.3937 107.74 106.68 108.07 -4.4231 112 39 4 0 0 0 5.8017E-05 1 22012 22012 129.77 18.485 1 8852800 5589 3544 3428 3431 5872 5872 0.04629421752088092 DEAKLIQNL 9 Unmodified _DEAKLIQNL_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2796020507812 2 522.290214 1042.56587 -0.73193 -0.00038228 0.84577 0.00044174 0.11384 5.9456E-05 522.2907341107245 112.32 1.2539 107.8 106.93 108.18 -4.5259 80 35 3 0 0 0 5.8017E-05 2 21448 21448;21501 129.77 29.973 1 9148900 5590 3544 3428 3431 5873;5874 5873 0.04629421752088092 DEAKLIQNL 9 Unmodified _DEAKLIQNL_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.267333984375 2 522.290214 1042.56587 0.64923 0.00033908 -0.53483 -0.00027934 0.1144 5.9748E-05 522.2900438261307 112.03 1.3263 107.8 106.94 108.26 -4.2289 87 37 4 0 0 0 0.031786 1 21439 21439 79.596 17.024 1 9294000 5591 3544 3428 3431 5875 5875 0.04629421752088092 DEALAAAAAAS 11 Unmodified _DEALAAAAAAS_ 0 0 0 sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1;sp|P16793|UL52_HCMVAPackagingproteinUL32homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL52PE=3SV=1 sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1 sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2489013671875 2 480.735271 959.45599 0.050348 2.4204E-05 0.21553 0.00010361 0.26588 0.00012782 480.7353820424743 39.379 1.2942 36.937 35.947 37.241 -2.4419 54 36 2 0 0 0 0.81285 1 7002 7002 17.443 0 1 1563600 5592 25760 3429 3432 5876 5876 -0.025360035871017317 DEALAQYF 8 Unmodified _DEALAQYF_ 0 0 0 TOP3A|p.R758Gfs*15|5|0.44|ENSG00000177302|chr17:18278231-18278231|G/-|frameshift_variant;nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A TOP3A|p.R758Gfs*15|5|0.44|ENSG00000177302|chr17:18278231-18278231|G/-|frameshift_variant TOP3A|p.R758Gfs*15|5|0.44|ENSG00000177302|chr17:18278231-18278231|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7235107421875 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 146.02 1 141.33 140.83 141.83 -4.6868 0 0 0 0.21323 1 28955 28955 14.582 4.3983 1 5593 6505 3430 3433 5877 5877 -0.05078487127468634 DEALVVHF 8 Unmodified _DEALVVHF_ 0 0 0 REV__KIF7|p.R1260Afs*16|2|0.28|ENSG00000166813|chr15:89628673-89628673|G/-|frameshift_variant REV__KIF7|p.R1260Afs*16|2|0.28|ENSG00000166813|chr15:89628673-89628673|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2412414550781 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 63.164 1 59.749 59.249 60.249 -3.4158 0 0 0 0.22676 1 11796 11796 1.7423 1.4908 1 + 5594 17873 3431 3434 5878 5878 -0.0016619051090174253 DEAMHDEYG 9 Unmodified _DEAMHDEYG_ 0 0 0 REV__nc|ENSG00000066044|Q15717-2|ELAVL1 REV__nc|ENSG00000066044|Q15717-2|ELAVL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2775268554688 2 533.692746 1065.37094 0.20933 0.00011172 -0.28593 -0.0001526 -0.076598 -4.088E-05 533.6915326866911 152.94 0.17474 148.17 148.05 148.22 -4.7684 5 4 2 0 0 0 0.58066 1 30388 30388 0.029283 0 1 711540 + 5595 14199 3432 3435 5879 5879 -0.15913117115201203 DEANVILYK 9 Unmodified _DEANVILYK_ 0 0 0 REV__tr|U7SQT7|U7SQT7_FUSNUCo-chaperoninGroESOS=FusobacteriumnucleatumCTI-5OX=1316586GN=groESPE=3SV=1 REV__tr|U7SQT7|U7SQT7_FUSNUCo-chaperoninGroESOS=FusobacteriumnucleatumCTI-5OX=1316586GN=groESPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2868041992188 2 532.784764 1063.55498 0.41023 0.00021857 -0.67486 -0.00035955 -0.26462 -0.00014099 532.7845820580405 71.57 2.546 68.103 67.767 70.314 -3.4671 199 72 6 0 0 0 0.40602 1 13799 13799 25.399 2.663 1 604140000 + 5596 25017 3433 3436 5880 5880 0.025740193778119647 DEAPTRQG 8 Unmodified _DEAPTRQG_ 0 0 0 ENST00000375856.4_1_13:110408345-110408618:-|nuORF ENST00000375856.4_1_13:110408345-110408618:-|nuORF ENST00000375856.4_1_13:110408345-110408618:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2354431152344 2 437.206681 872.398809 NaN NaN NaN NaN NaN NaN NaN 100.04 1 96.048 95.548 96.548 -3.9895 0 0 0 0.21452 1 19215 19215 13.508 4.1604 1 5597 9240 3434 3437 5881 5881 -0.04249426072806273 DEAPVLDVRY 10 Unmodified _DEAPVLDVRY_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.264404296875 2 588.798403 1175.58225 0.943 0.00055524 -0.32913 -0.00019379 0.61387 0.00036144 588.7979454013067 119.54 0.88535 114.9 114.42 115.31 -4.645 77 24 4 0 0 0 0.092113 1 22948 22948 63.227 40.491 1 37332000 5598 1772 3435 3438 5882 5882 0.0014850291820494022 DEAPVLDVRY 10 Unmodified _DEAPVLDVRY_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2762451171875 2 588.798403 1175.58225 0.40614 0.00023914 0.49086 0.00028902 0.897 0.00052815 588.7983279541413 119.3 0.9734 114.84 114.43 115.4 -4.467 84 27 4 0 0 0 0.65108 1 22909 22909 16.149 2.2431 1 38027000 5599 1772 3435 3438 5883 5883 0.0014850291820494022 DEAPVLDVRY 10 Unmodified _DEAPVLDVRY_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 588.798403 1175.58225 0.32934 0.00019392 0.8921 0.00052527 1.2214 0.00071919 588.7983928441697 114.9 0.90042 114.9 114.44 115.34 0 0.023982 0.00089408 NaN 63.227 67 25 3 NaN NaN NaN NaN 0 NaN NaN 0 34770000 5600 1772 3435 3438 0.0014850291820494022 DEAPVLDVRY 10 Unmodified _DEAPVLDVRY_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 588.798403 1175.58225 0.70591 0.00041564 0.0063925 3.7639E-06 0.71231 0.0004194 588.7981457574269 119.4 1.1971 114.88 114.41 115.61 -4.5221 2.7794E-05 -0.00014893 NaN 63.227 92 33 4 NaN NaN NaN NaN 0 NaN NaN 0 46900000 5601 1772 3435 3438 0.0014850291820494022 DEAPVLDVRY 10 Unmodified _DEAPVLDVRY_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 588.798403 1175.58225 0.40614 0.00023914 0.49086 0.00028902 0.897 0.00052815 588.7983279541413 119.3 0.9734 114.84 114.43 115.4 -4.467 -0.042056 0.00042158 NaN 63.227 84 27 4 NaN NaN NaN NaN 0 NaN NaN 0 38027000 5602 1772 3435 3438 0.0014850291820494022 DEAQKLIY 8 Unmodified _DEAQKLIY_ 0 0 0 RGS21|p.C117Y|1|0.11|ENSG00000253148|chr1:192366015-192366015|G/A|missense_variant;ENSG00000253148|ENST00000417209|RGS21 RGS21|p.C117Y|1|0.11|ENSG00000253148|chr1:192366015-192366015|G/A|missense_variant RGS21|p.C117Y|1|0.11|ENSG00000253148|chr1:192366015-192366015|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27252197265625 2 490.258382 978.502212 0.091847 4.5029E-05 0.22543 0.00011052 0.31727 0.00015555 490.25849317703353 131.59 0.4525 126.95 126.79 127.24 -4.6368 18 12 2 0 0 0 0.27274 1 25920 25920 38.151 2.107 1 1134900 5603 7910 3436 3439 5884 5884 0.012100613149982564 DEAQKLIY 8 Unmodified _DEAQKLIY_ 0 0 0 RGS21|p.C117Y|1|0.11|ENSG00000253148|chr1:192366015-192366015|G/A|missense_variant;ENSG00000253148|ENST00000417209|RGS21 RGS21|p.C117Y|1|0.11|ENSG00000253148|chr1:192366015-192366015|G/A|missense_variant RGS21|p.C117Y|1|0.11|ENSG00000253148|chr1:192366015-192366015|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2581481933594 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 131.87 1 127.02 126.52 127.52 -4.8527 0 0 0 0.064425 1 25326 25326 50.855 0.92203 1 5604 7910 3436 3439 5885 5885 0.012100613149982564 DEAQYIKN 8 Unmodified _DEAQYIKN_ 0 0 0 tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2641296386719 2 490.737814 979.461075 -0.020558 -1.0089E-05 -0.48238 -0.00023672 -0.50294 -0.00024681 490.73722648217665 71.194 0.42472 67.945 67.67 68.095 -3.2492 17 11 2 0 0 0 0.96386 1 13849 13849 14.838 3.198 1 1085300 5605 26191 3437 3440 5886 5886 -0.02947699724472841 DEARGLLAA 9 Unmodified _DEARGLLAA_ 0 0 0 REV__ENSG00000205922|ENST00000382349|ONECUT3 REV__ENSG00000205922|ENST00000382349|ONECUT3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2384338378906 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 55.084 1 52.201 51.701 52.701 -2.8837 0 0 0 0.12123 1 10532 10532 34.402 5.3201 1 + 5606 19606 3438 3441 5887 5887 0.021483103750597365 DEARGLLAA 9 Unmodified _DEARGLLAA_ 0 0 0 REV__ENSG00000205922|ENST00000382349|ONECUT3 REV__ENSG00000205922|ENST00000382349|ONECUT3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2388916015625 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 55.288 1 52.15 51.65 52.65 -3.1377 0 0 0 0.054963 1 10260 10260 49.933 6.965 1 + 5607 19606 3438 3441 5888 5888 0.021483103750597365 DEARPNTI 8 Unmodified _DEARPNTI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2385559082031 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 66.941 1 63.832 63.332 64.332 -3.1086 0 0 0 0.2074 1 12979 12979 19.439 1.304 1 5608 4448 3439 3442 5889 5889 -0.0148856652166387 DEARPNTI 8 Unmodified _DEARPNTI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22991943359375 2 458.230156 914.445759 -0.7893 -0.00036168 0.80518 0.00036896 0.01588 7.2767E-06 458.2305344850001 20.98 0.3474 19.259 19.079 19.427 -1.7211 13 9 2 0 0 0 8448 1 3255 3255 0.12286 0 1 183580 5609 4448 3439 3442 5890 5890 -0.0148856652166387 DEARRQRWRGL 11 Unmodified _DEARRQRWRGL_ 0 0 0 REV__ENSG00000237489|ENST00000637128|C10orf143 REV__ENSG00000237489|ENST00000637128|C10orf143 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2546691894531 3 481.595635 1441.76508 NaN NaN NaN NaN NaN NaN NaN 135.83 1 131.19 130.69 131.69 -4.6399 0 0 0 0.23689 1 26795 26795 2.8433 0 1 + 5610 19771 3440 3443 5891 5891 0.061864948233505856 DEATGWLFR 9 Unmodified _DEATGWLFR_ 0 0 0 REV__ENST00000556883.1_1_14:93650616-93651154:-|nuORF REV__ENST00000556883.1_1_14:93650616-93651154:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7667236328125 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 157.34 1 152.55 152.05 153.05 -4.7885 0 0 0 0.23508 1 31289 31289 9.3831 0.63772 1 + 5611 23007 3441 3444 5892 5892 -0.023760180791896346 DEAVLNLIAE 10 Unmodified _DEAVLNLIAE_ 0 0 0 ENSG00000112877|ENST00000264935|CEP72 ENSG00000112877|ENST00000264935|CEP72 ENSG00000112877|ENST00000264935|CEP72 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7882690429688 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 118.47 1 114.06 113.56 114.56 -4.4088 0 0 0 2.8426 1 22797 22797 3.5927 0 1 5612 2715 3442 3445 5893 5893 0.021096981696246075 DEAWGLQK 8 Unmodified _DEAWGLQK_ 0 0 0 REV__ENST00000305097.5_1_3:152555723-152555759:+|nuORF REV__ENST00000305097.5_1_3:152555723-152555759:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1595153808594 3 316.159142 945.455596 NaN NaN NaN NaN NaN NaN NaN 77.708 1 73.942 73.442 74.442 -3.7664 0 0 0 0.21486 1 14726 14726 1.6526 0 1 + 5613 20431 3443 3446 5894 5894 -0.019313785162808017 DEAWSDSDY 9 Unmodified _DEAWSDSDY_ 0 0 0 REV__ENSG00000111254|ENST00000228850|AKAP3 REV__ENSG00000111254|ENST00000228850|AKAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7732543945312 2 544.196176 1086.3778 0.1185 6.4486E-05 -1.0081 -0.00054862 -0.88963 -0.00048413 544.1955338409362 37.465 1.3025 35.117 34.006 35.308 -2.3479 57 37 2 0 0 0 0.73309 1 6578 6578 4.756 0 1 663240 + 5614 15237 3444 3447 5895 5895 -0.16193480962965623 DEAWTPPF 8 Unmodified _DEAWTPPF_ 0 0 0 REV__nc|ENSG00000011451|O95785|WIZ REV__nc|ENSG00000011451|O95785|WIZ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2383728027344 2 481.71635 961.418148 0.049567 2.3877E-05 -1.0564 -0.00050887 -1.0068 -0.00048499 481.71578135730283 129.97 0.67744 125.34 125.04 125.72 -4.6359 35 18 2 0 0 0 0.73426 1 25628 25628 9.3474 0.75416 1 2808300 + 5615 13937 3445 3448 5896 5896 -0.06410469781906158 DECCDCVGMC 10 Unmodified _DECCDCVGMC_ 0 0 0 ENSG00000128791|ENST00000262120|TWSG1 ENSG00000128791|ENST00000262120|TWSG1 ENSG00000128791|ENST00000262120|TWSG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 539.1448364257812 2 539.144348 1076.27414 NaN NaN NaN NaN NaN NaN NaN 166.54 1 166.54 166.04 167.04 0 0 0 0 2.8426 1 33941 33941 0 0 1 5616 3541 3446 3449 5897 5897 -0.2609421025415486 DECDLRVMTY 10 Unmodified _DECDLRVMTY_ 0 0 0 REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.781982421875 2 622.767931 1243.52131 NaN NaN NaN NaN NaN NaN NaN 110.47 1 105.98 105.48 106.48 -4.4915 0 0 0 0.22588 1 21205 21205 9.3831 0 1 + 5617 13708 3447 3450 5898 5898 -0.09071093447869316 DECDRNNI 8 Unmodified _DECDRNNI_ 0 0 0 tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1 tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1 tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27667236328125 2 489.700906 977.387258 0.029915 1.4649E-05 -1.4381 -0.00070424 -1.4082 -0.00068959 489.7001042274261 89.168 0.58913 85.376 85.057 85.646 -3.7926 20 16 2 0 0 0 1.0249 1 17487 17487 2.5775 2.5775 1 1129800 5618 26186 3448 3451 5899 5899 -0.10233991158452227 DECKKAHV 8 Unmodified _DECKKAHV_ 0 0 0 ENST00000593859.5_1_19:51322452-51323394:-|nuORF;nc|ENSG00000167748|P06870-2|KLK1;ENSG00000167748|ENST00000301420|KLK1 ENST00000593859.5_1_19:51322452-51323394:-|nuORF ENST00000593859.5_1_19:51322452-51323394:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25152587890625 2 465.229102 928.443651 0.52787 0.00024558 -1.0627 -0.0004944 -0.53482 -0.00024881 465.22864447627643 30.031 3.5999 27.957 26.893 30.493 -2.0743 269 102 4 0 0 0 8448 1 5569 5569 0.30703 0 1 14243000 5619 5843 3449 3452 5900 5900 -0.023433185311318994 DECQTRNGG 9 Unmodified _DECQTRNGG_ 0 0 0 nc|ENSG00000175356|Q9NQ36-3|SCUBE2;SCUBE2|p.N754Kfs*2|1|0.22|ENSG00000175356|chr11:9029954-9029955|-/T|frameshift_variant;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2 nc|ENSG00000175356|Q9NQ36-3|SCUBE2 nc|ENSG00000175356|Q9NQ36-3|SCUBE2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2555236816406 2 490.19853 978.382507 0.30463 0.00014933 1.35 0.00066176 1.6546 0.00081109 490.1988179600279 30.314 0.25036 28.239 28.11 28.36 -2.0743 8 6 2 0 0 0 0.87634 1 5178 5178 6.7232 0.96273 1 219570 5620 6404 3450 3453 5901 5901 -0.10754875301199718 DECVTGIH 8 Unmodified _DECVTGIH_ 0 0 0 CON__ENSEMBL:ENSBTAP00000016046;nc|ENSG00000077942|P23142-2|FBLN1;nc|ENSG00000077942|P23142-3|FBLN1;nc|ENSG00000077942|P23142-4|FBLN1;ENSG00000077942|ENST00000327858|FBLN1;ENST00000476366.1_1_22:45937122-45946826:+|nuORF CON__ENSEMBL:ENSBTAP00000016046;nc|ENSG00000077942|P23142-2|FBLN1 nc|ENSG00000077942|P23142-2|FBLN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22711181640625 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 67.726 1 64.23 63.73 64.73 -3.4965 0 0 0 0.23749 1 12712 12712 0.12286 0 1 + 5621 640;1565 3451 3454 5902 5902 -0.07147286693464139 DECYDCMFDDK 11 Unmodified _DECYDCMFDDK_ 0 0 0 REV__ZNF423|p.Q394Rfs*36|1|0.13|ENSG00000102935|chr16:49637973-49637973|C/-|frameshift_variant REV__ZNF423|p.Q394Rfs*36|1|0.13|ENSG00000102935|chr16:49637973-49637973|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.54339599609375 3 461.822773 1382.44649 NaN NaN NaN NaN NaN NaN NaN 162.59 1 157.4 156.9 157.9 -5.1878 0 0 0 0.23698 1 31579 31579 0.40827 0.31342 1 + 5622 14857 3452 3455 5903 5903 -0.2294364404147018 DEDAQIQEM 9 Unmodified _DEDAQIQEM_ 0 0 0 nc|ENSG00000048052|Q9UKV0-4|HDAC9;nc|ENSG00000048052|Q9UKV0-11|HDAC9;nc|ENSG00000048052|Q9UKV0-9|HDAC9;nc|ENSG00000048052|Q9UKV0-10|HDAC9;nc|ENSG00000048052|Q9UKV0-8|HDAC9;nc|ENSG00000048052|Q9UKV0-3|HDAC9;ENST00000461159.6_1_7:18330122-18868840:+|nuORF;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9 nc|ENSG00000048052|Q9UKV0-4|HDAC9 nc|ENSG00000048052|Q9UKV0-4|HDAC9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015075683594 3 360.150095 1077.42845 NaN NaN NaN NaN NaN NaN NaN 99.449 1 95.179 94.679 95.679 -4.2692 0 0 0 0.23508 1 19010 19010 5.2969 0.76802 1 5623 12214 3453 3456 5904 5904 -0.1071627490962328 DEDCRHGM 8 Unmodified _DEDCRHGM_ 0 0 0 ENST00000580963.1_1_17:65211970-65214920:-|nuORF ENST00000580963.1_1_17:65211970-65214920:-|nuORF ENST00000580963.1_1_17:65211970-65214920:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.4519348144531 3 321.453343 961.3382 NaN NaN NaN NaN NaN NaN NaN 124.49 1 119.91 119.41 120.41 -4.5757 0 0 0 0.2386 1 24548 24548 0.12286 0.12286 1 5624 11500 3454 3457 5905 5905 -0.14401602719033235 DEDDCEDVR 9 Unmodified _DEDDCEDVR_ 0 0 0 C8A|p.G124S|1|0.4|ENSG00000157131|chr1:56876115-56876115|G/A|missense_variant;ENSG00000157131|ENST00000361249|C8A C8A|p.G124S|1|0.4|ENSG00000157131|chr1:56876115-56876115|G/A|missense_variant C8A|p.G124S|1|0.4|ENSG00000157131|chr1:56876115-56876115|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7901611328125 2 548.198393 1094.38223 0.12643 6.9311E-05 -0.32878 -0.00018024 -0.20235 -0.00011093 548.6977674235281 86.532 0.10892 82.805 82.728 82.837 -3.727 4 2 2 0 0 0 0.74655 1 16911 16911 15.847 11.518 1 505850 5625 353 3455 3458 5906 5906 -0.16118339811737314 DEDDDDEDL 9 Unmodified _DEDDDDEDL_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2630004882812 2 540.678013 1079.34147 0.23015 0.00012444 0.10502 5.678E-05 0.33516 0.00018122 540.6778417747677 100.37 0.82798 96.215 95.904 96.732 -4.1594 69 23 5 0 0 0 0.87258 1 19777 19777 7.9102 0 1 7135100 5626 3650 3456 3459 5907 5907 -0.19502402650368822 DEDDDDEDL 9 Unmodified _DEDDDDEDL_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.263916015625 2 540.678013 1079.34147 0.36937 0.00019971 -0.070452 -3.8092E-05 0.29892 0.00016162 540.6777901313087 100.6 0.74818 96.3 95.92 96.669 -4.297 39 21 2 0 0 0 0.87974 1 19287 19287 4.3292 2.2695 1 5036800 5627 3650 3456 3459 5908 5908 -0.19502402650368822 DEDDDEAGG 9 Unmodified _DEDDDEAGG_ 0 0 0 ENSG00000059915|ENST00000020673|PSD ENSG00000059915|ENST00000020673|PSD ENSG00000059915|ENST00000020673|PSD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5301513671875 2 461.649059 921.283564 NaN NaN NaN NaN NaN NaN NaN 125.72 1 121.12 120.62 121.62 -4.5984 0 0 0 0.19652 1 24786 24786 0.029283 0.021006 1 5628 1303 3457 3460 5909 5909 -0.18022619785119787 DEDDDEAGG 9 Unmodified _DEDDDEAGG_ 0 0 0 ENSG00000059915|ENST00000020673|PSD ENSG00000059915|ENST00000020673|PSD ENSG00000059915|ENST00000020673|PSD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5311279296875 2 461.649059 921.283564 NaN NaN NaN NaN NaN NaN NaN 125.67 1 121.02 120.52 121.52 -4.6495 0 0 0 0.19652 1 24181 24181 0.12781 0.063827 1 5629 1303 3457 3460 5910 5910 -0.18022619785119787 DEDDDFSKW 9 Unmodified _DEDDDFSKW_ 0 0 0 APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 386.1518859863281 3 386.152493 1155.43565 NaN NaN NaN NaN NaN NaN NaN 6.4052 1 6.4052 5.9052 6.9052 0 0 0 0 0.23508 1 476 476 0.26902 0 1 5630 185 3458 3461 5911 5911 -0.13585219037554452 DEDDDYYF 8 Unmodified _DEDDDYYF_ 0 0 0 ENSG00000103381|ENST00000381774|CPPED1 ENSG00000103381|ENST00000381774|CPPED1 ENSG00000103381|ENST00000381774|CPPED1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.277099609375 2 541.185277 1080.356 0.32041 0.0001734 -3.8817 -0.0021007 -3.5613 -0.0019273 541.6867368997817 150.61 0.21472 145.88 145.71 145.93 -4.7323 7 5 2 0 0 0 0.89147 1 29925 29925 0.12286 0.079078 1 1609200 5631 2187 3459 3462 5912 5912 -0.18096285711567361 DEDDEESGGSY 11 Unmodified _DEDDEESGGSY_ 0 0 0 STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant;nc|ENSG00000130052|Q92502|STARD8;STARD8|p.L976Afs*8|1|0.27|ENSG00000130052|chrX:68724090-68724091|-/G|frameshift_variant;ENSG00000130052|ENST00000374599|STARD8 STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.296630859375 2 601.702019 1201.38949 0.048264 2.904E-05 -1.4207 -0.00085482 -1.3724 -0.00082578 601.7010566005449 19.576 0.23585 18.251 18.11 18.346 -1.3251 10 6 2 0 0 0 0.81736 1 2980 2980 1.3295 0.5359 1 527590 5632 3582 3460 3463 5913 5913 -0.20315328730293913 DEDDHEDH 8 Unmodified _DEDDHEDH_ 0 0 0 nc|ENSG00000101746|O94818-2|NOL4;ENSG00000101746|ENST00000261592|NOL4;nc|ENSG00000101746|O94818-4|NOL4;ENST00000586314.5_1_18:31432808-31708839:-|nuORF;nc|ENSG00000101746|O94818-3|NOL4 nc|ENSG00000101746|O94818-2|NOL4 nc|ENSG00000101746|O94818-2|NOL4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 506.17974853515625 2 506.16795 1010.32135 NaN NaN NaN NaN NaN NaN NaN 122.5 1 117.95 117.45 118.45 -4.5476 0 0 0 0.23312 1 24150 24150 6.2058 4.8763 1 5633 2082 3461 3464 5914 5914 -0.18340108799657173 DEDDHRNSHV 10 Unmodified _DEDDHRNSHV_ 0 0 0 KIF26B|p.G746Efs*98|1|0.05|ENSG00000162849|chr1:245646258-245646259|-/AGAT|frameshift_variant;KIF26B|p.R1067Gfs*65|1|0.27|ENSG00000162849|chr1:245686177-245686177|C/-|frameshift_variant;nc|ENSG00000162849|Q2KJY2-2|KIF26B;KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant;ENSG00000162849|ENST00000407071|KIF26B KIF26B|p.G746Efs*98|1|0.05|ENSG00000162849|chr1:245646258-245646259|-/AGAT|frameshift_variant KIF26B|p.G746Efs*98|1|0.05|ENSG00000162849|chr1:245646258-245646259|-/AGAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 612.441650390625 2 612.255422 1222.49629 NaN NaN NaN NaN NaN NaN NaN 173.17 1 168.38 167.88 168.88 -4.7898 0 0 0 2.8426 1 35312 35312 0.063865 0 1 5634 5375 3462 3465 5915 5915 -0.10605688934606405 DEDDQCLLQ 9 Unmodified _DEDDQCLLQ_ 0 0 0 nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant;MYCBP2|p.K375Sfs*4|1|0.3|ENSG00000005810|chr13:77270014-77270014|T/-|frameshift_variant;MYCBP2|p.G651Efs*24|1|0.04|ENSG00000005810|chr13:77257781-77257782|-/ATTAGTTTTT|frameshift_variant nc|ENSG00000005810|O75592-2|MYCBP2 nc|ENSG00000005810|O75592-2|MYCBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20123291015625 3 360.150095 1077.42845 -0.59536 -0.00021442 0.64435 0.00023206 0.048995 1.7646E-05 360.1503930967477 98.114 0.57592 94.158 93.957 94.533 -3.9564 21 16 2 0 0 0 0.87609 1 18830 18830 7.609 6.9113 1 1128400 5635 996 3463 3466 5916 5916 -0.1071627490962328 DEDDTTEEEP 10 Unmodified _DEDDTTEEEP_ 0 0 0 ENSG00000105613|ENST00000251472|MAST1 ENSG00000105613|ENST00000251472|MAST1 ENSG00000105613|ENST00000251472|MAST1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2603149414062 2 590.21222 1178.40989 0.64525 0.00038083 0.36328 0.00021441 1.0085 0.00059525 590.2123760779588 33.101 0.97827 30.955 30.655 31.634 -2.1468 68 27 3 0 0 0 0.75565 1 5718 5718 3.9444 3.9444 1 5083200 5636 2322 3464 3467 5917 5917 -0.1721815807047733 DEDDTWEH 8 Unmodified _DEDDTWEH_ 0 0 0 REV__nc|ENSG00000196104|Q9BQ16-7|SPOCK3 REV__nc|ENSG00000196104|Q9BQ16-7|SPOCK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6925659179688 2 523.688518 1045.36248 0.31625 0.00016562 -0.67604 -0.00035403 -0.35978 -0.00018841 523.68763141215 75.015 0.70882 75.015 74.567 75.276 0 31 19 2 0 0 0 0.64227 3 14507 14498;14507;14589 19.439 5.9311 1 2135600 + 5637 19214 3465 3468 5918;5919;5920 5919 -0.15838347760154647 DEDEDEDDTY 10 Unmodified _DEDEDEDDTY_ 0 0 0 REV__nc|ENSG00000112419|O75167-5|PHACTR2 REV__nc|ENSG00000112419|O75167-5|PHACTR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7518920898438 2 623.19931 1244.38407 NaN NaN NaN NaN NaN NaN NaN 111.25 1 111.25 110.75 111.75 0 0 0 0 0.22588 1 21880 21880 10.824 6.8795 1 + 5638 15299 3466 3469 5921 5921 -0.22835052312780135 DEDEDGDNDA 10 Unmodified _DEDEDGDNDA_ 0 0 0 REV__NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant REV__NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7799072265625 2 547.673262 1093.33197 NaN NaN NaN NaN NaN NaN NaN 166.25 1 161.27 160.77 161.77 -4.9811 0 0 0 0.22588 1 32565 32565 3.5965 1.019 1 + 5639 19234 3467 3470 5922 5922 -0.21096170935879854 DEDEDGDNDA 10 Unmodified _DEDEDGDNDA_ 0 0 0 REV__NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant REV__NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7874145507812 2 547.673262 1093.33197 NaN NaN NaN NaN NaN NaN NaN 166.27 1 161.29 160.79 161.79 -4.9811 0 0 0 0.22588 1 32572 32572 3.5965 1.5367 1 + 5640 19234 3467 3470 5923 5923 -0.21096170935879854 DEDEEDKVWEF 11 Unmodified _DEDEEDKVWEF_ 0 0 0 REV__ENSG00000138078|ENST00000409411|PREPL REV__ENSG00000138078|ENST00000409411|PREPL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2511291503906 3 480.8649 1439.57287 NaN NaN NaN NaN NaN NaN NaN 20.207 1 18.882 18.382 19.382 -1.3251 0 0 0 0.23698 1 3124 3124 0.45452 0 1 + 5641 16433 3468 3471 5924 5924 -0.1293335494863186 DEDEEDKVWEF 11 Unmodified _DEDEEDKVWEF_ 0 0 0 REV__ENSG00000138078|ENST00000409411|PREPL REV__ENSG00000138078|ENST00000409411|PREPL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.236572265625 3 480.8649 1439.57287 NaN NaN NaN NaN NaN NaN NaN 20.091 1 18.455 17.955 18.955 -1.6351 0 0 0 0.23698 1 3072 3072 1.3296 0 1 + 5642 16433 3468 3471 5925 5925 -0.1293335494863186 DEDEEDSDSY 10 Unmodified _DEDEEDSDSY_ 0 0 0 REV__HAP1|p.L341Rfs*3|1|0.55|ENSG00000173805|chr17:41731539-41731540|AA/-|frameshift_variant REV__HAP1|p.L341Rfs*3|1|0.55|ENSG00000173805|chr17:41731539-41731540|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.298095703125 2 602.194027 1202.3735 NaN NaN NaN NaN NaN NaN NaN 95.528 1 95.528 95.028 96.028 0 0 0 0 0.22588 1 18715 18715 6.7232 3.7279 1 + 5643 18375 3469 3472 5926 5926 -0.2195903496722167 DEDEEDSDSY 10 Unmodified _DEDEEDSDSY_ 0 0 0 REV__HAP1|p.L341Rfs*3|1|0.55|ENSG00000173805|chr17:41731539-41731540|AA/-|frameshift_variant REV__HAP1|p.L341Rfs*3|1|0.55|ENSG00000173805|chr17:41731539-41731540|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2884521484375 2 602.194027 1202.3735 NaN NaN NaN NaN NaN NaN NaN 128.03 1 123.21 122.71 123.71 -4.817 0 0 0 0.22588 1 24576 24576 1.6526 1.0511 1 + 5644 18375 3469 3472 5927 5927 -0.2195903496722167 DEDEFFGEV 9 Unmodified _DEDEFFGEV_ 0 0 0 REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9 REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7824096679688 2 543.716744 1085.41894 NaN NaN NaN NaN NaN NaN NaN 133.79 1 128.97 128.47 129.47 -4.8175 0 0 0 0.19632 1 25752 25752 0.073264 0 1 + 5645 23961 3470 3473 5928 5928 -0.12035719923505894 DEDEYNKKYQL 11 Unmodified _DEDEYNKKYQL_ 0 0 0 REV__TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant REV__TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 482.2026672363281 3 482.224539 1443.65179 NaN NaN NaN NaN NaN NaN NaN 156.11 1 156.11 155.61 156.61 0 0 0 0 0.22632 1 31312 31312 1.4551 1.4546 1 + 5646 16087 3471 3474 5929 5929 -0.05229082923688111 DEDFFKGDL 9 Unmodified _DEDFFKGDL_ 0 0 0 REV__tr|U7T2J7|U7T2J7_FUSNUDUF1877domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00730PE=4SV=1 REV__tr|U7T2J7|U7T2J7_FUSNUDUF1877domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00730PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7809448242188 2 543.242929 1084.47131 0.32248 0.00017519 0.86274 0.00046868 1.1852 0.00064386 543.2433051149657 114.44 0.71059 114.44 114.01 114.72 0 25 19 2 0 0 0 0.79204 1 22431 22431 16.942 4.4107 1 1673500 + 5647 25333 3472 3475 5930 5930 -0.06755136789888638 DEDIEDLDHC 10 Unmodified _DEDIEDLDHC_ 0 0 0 ENST00000354771.8_1_15:85081845-85089490:-|nuORF;ENST00000339094.5_1_15:85081807-85112930:-|nuORF ENST00000354771.8_1_15:85081845-85089490:-|nuORF ENST00000354771.8_1_15:85081845-85089490:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2792358398438 2 602.22715 1202.43975 NaN NaN NaN NaN NaN NaN NaN 97.61 1 93.375 92.875 93.875 -4.2348 0 0 0 2.8426 1 18647 18647 0.26539 0 1 5648 8835 3473 3476 5931 5931 -0.15337497606128636 DEDIGINAIS 10 Unmodified _DEDIGINAIS_ 0 0 0 ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;nc|ENSG00000196159|Q6V0I7-3|FAT4;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-2|FAT4 ENSG00000196159|ENST00000394329|FAT4 ENSG00000196159|ENST00000394329|FAT4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6976928710938 2 523.753661 1045.49277 NaN NaN NaN NaN NaN NaN NaN 140.08 1 135.23 134.73 135.73 -4.8492 0 0 0 0.22588 1 27011 27011 7.609 0.31972 1 5649 7238 3474 3477 5932 5932 -0.02815751761181673 DEDIKDSPY 9 Unmodified _DEDIKDSPY_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant;FLNB|p.A832Rfs*9|1|0.26|ENSG00000136068|chr3:58111795-58111796|-/C|frameshift_variant nc|ENSG00000136068|O75369-5|FLNB nc|ENSG00000136068|O75369-5|FLNB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.282470703125 2 541.237844 1080.46113 NaN NaN NaN NaN NaN NaN NaN 41.582 1 41.582 41.082 42.082 0 0 0 0 0.22658 1 7760 7760 21.537 8.0291 1 5650 3982 3475 3478 5933 5933 -0.07587744515149097 DEDIKDSPY 9 Unmodified _DEDIKDSPY_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant;FLNB|p.A832Rfs*9|1|0.26|ENSG00000136068|chr3:58111795-58111796|-/C|frameshift_variant nc|ENSG00000136068|O75369-5|FLNB nc|ENSG00000136068|O75369-5|FLNB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2603149414062 2 541.237844 1080.46113 NaN NaN NaN NaN NaN NaN NaN 41.623 1 41.623 41.123 42.123 0 0 0 0 0.22658 1 7768 7768 21.537 7.6309 1 5651 3982 3475 3478 5934 5934 -0.07587744515149097 DEDIKDSPY 9 Unmodified _DEDIKDSPY_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant;FLNB|p.A832Rfs*9|1|0.26|ENSG00000136068|chr3:58111795-58111796|-/C|frameshift_variant nc|ENSG00000136068|O75369-5|FLNB nc|ENSG00000136068|O75369-5|FLNB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2693481445312 2 541.237844 1080.46113 NaN NaN NaN NaN NaN NaN NaN 41.735 1 41.735 41.235 42.235 0 0 0 0 0.22378 1 7791 7791 22.736 7.898 1 5652 3982 3475 3478 5935 5935 -0.07587744515149097 DEDLEAELLAL 11 Unmodified _DEDLEAELLAL_ 0 0 0 CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B;nc|ENSG00000154222|Q5T0F9-5|CC2D1B;ENST00000491136.6_1_1:52826785-52830292:-|nuORF;CC2D1B|p.L517Cfs*53|1|0.58|ENSG00000154222|chr1:52357829-52357829|G/-|frameshift_variant CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.200927734375 3 410.874848 1229.60271 -0.18471 -7.5893E-05 1.431 0.00058798 1.2463 0.00051209 410.87532577064087 77.454 0.71242 73.991 73.683 74.396 -3.4633 39 19 3 0 0 0 0.96192 1 15183 15183 1.3296 0.55311 1 2655000 5653 404 3476 3479 5936 5936 -0.00290371212622631 DEDLEAELLAL 11 Unmodified _DEDLEAELLAL_ 0 0 0 CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B;nc|ENSG00000154222|Q5T0F9-5|CC2D1B;ENST00000491136.6_1_1:52826785-52830292:-|nuORF;CC2D1B|p.L517Cfs*53|1|0.58|ENSG00000154222|chr1:52357829-52357829|G/-|frameshift_variant CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 410.874848 1229.60271 0.092696 3.8087E-05 1.1126 0.00045715 1.2053 0.00049523 410.8752031836525 74.048 0.55589 74.048 73.734 74.29 0 0.030141 -0.00032668 NaN 1.3296 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2315300 5654 404 3476 3479 -0.00290371212622631 DEDLEAELLAL 11 Unmodified _DEDLEAELLAL_ 0 0 0 CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B;nc|ENSG00000154222|Q5T0F9-5|CC2D1B;ENST00000491136.6_1_1:52826785-52830292:-|nuORF;CC2D1B|p.L517Cfs*53|1|0.58|ENSG00000154222|chr1:52357829-52357829|G/-|frameshift_variant CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 410.874848 1229.60271 -0.0021265 -8.7374E-07 1.1137 0.00045758 1.1116 0.00045671 410.875170008435 77.819 0.56787 74.053 73.68 74.248 -3.7664 0.03488 -0.00032536 NaN 1.3296 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1588400 5655 404 3476 3479 -0.00290371212622631 DEDLEAELLAL 11 Unmodified _DEDLEAELLAL_ 0 0 0 CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B;nc|ENSG00000154222|Q5T0F9-5|CC2D1B;ENST00000491136.6_1_1:52826785-52830292:-|nuORF;CC2D1B|p.L517Cfs*53|1|0.58|ENSG00000154222|chr1:52357829-52357829|G/-|frameshift_variant CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 410.874848 1229.60271 -0.3491 -0.00014344 1.7222 0.00070762 1.3731 0.00056419 410.87540995909563 77.639 0.69535 73.98 73.573 74.268 -3.6588 -0.037775 0.00042475 NaN 1.3296 40 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2040500 5656 404 3476 3479 -0.00290371212622631 DEDLERWLQ 9 Unmodified _DEDLERWLQ_ 0 0 0 ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14 ENSG00000121101|ENST00000349033|TEX14 ENSG00000121101|ENST00000349033|TEX14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.301513671875 2 602.28566 1202.55677 NaN NaN NaN NaN NaN NaN NaN 148.19 1 148.19 147.69 148.69 0 0 0 0 0.23508 1 29654 29654 7.9102 1.187 1 5657 3170 3477 3480 5937 5937 -0.03640971604227161 DEDLKLSDM 9 Unmodified _DEDLKLSDM_ 0 0 0 ENST00000530101.5_1_11:65619099-65623644:+|nuORF;ENSG00000172803|ENST00000308342|SNX32 ENST00000530101.5_1_11:65619099-65623644:+|nuORF ENST00000530101.5_1_11:65619099-65623644:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2670288085938 2 533.242072 1064.46959 0.08976 4.7864E-05 3.8273 0.0020409 3.917 0.0020887 533.7438947002867 113.13 0.17836 113.13 113.07 113.24 0 5 4 2 0 0 0 0.57447 1 22248 22248 14.838 0.93222 1 472380 5658 6241 3478 3481 5938 5938 -0.06006513870170238 DEDLSWGDE 9 Unmodified _DEDLSWGDE_ 0 0 0 ENST00000485840.1_1_2:113993107-113994485:-|nuORF ENST00000485840.1_1_2:113993107-113994485:-|nuORF ENST00000485840.1_1_2:113993107-113994485:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26171875 2 533.204001 1064.39345 NaN NaN NaN NaN NaN NaN NaN 147.31 1 142.31 141.81 142.81 -5 0 0 0 0.23508 1 28516 28516 7.2892 0 1 5659 10446 3479 3482 5939 5939 -0.13617194445942005 DEDMPTPD 8 Unmodified _DEDMPTPD_ 0 0 0 REV__ENST00000425690.7_1_19:45165089-45165437:+|nuORF REV__ENST00000425690.7_1_19:45165089-45165437:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.1729431152344 2 460.171115 918.327678 NaN NaN NaN NaN NaN NaN NaN 133.68 1 129.04 128.54 129.54 -4.6399 0 0 0 0.23749 1 26360 26360 0.0082765 0 1 + 5660 21558 3480 3483 5940 5940 -0.1347530689249652 DEDQDDLN 8 Unmodified _DEDQDDLN_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;nc|ENSG00000133454|Q8IUG5-2|MYO18B ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7783508300781 2 482.180526 962.346499 0.30744 0.00014824 -0.96766 -0.00046658 -0.66022 -0.00031834 482.179946016549 115.89 0.40237 111.31 111.19 111.59 -4.5815 14 11 2 0 0 0 0.88445 1 22239 22239 0.12286 0.049601 1 778350 5661 3804 3481 3484 5941 5941 -0.13618053997083734 DEDQFYTVY 9 Unmodified _DEDQFYTVY_ 0 0 0 ENSG00000183690|ENST00000420999|EFHC2 ENSG00000183690|ENST00000420999|EFHC2 ENSG00000183690|ENST00000420999|EFHC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.248046875 2 590.245669 1178.47678 0.51691 0.0003051 2.701 0.0015943 3.2179 0.0018994 590.2473911629935 116.1 0.16982 111.61 111.48 111.65 -4.486 5 4 2 0 0 0 0.66537 1 22886 22886 8.5933 0.68312 1 682370 5662 6861 3482 3485 5942 5942 -0.1053145799808135 DEDSDCDPF 9 Unmodified _DEDSDCDPF_ 0 0 0 REV__ENST00000426861.5_1_17:56598198-56599363:-|nuORF REV__ENST00000426861.5_1_17:56598198-56599363:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2618408203125 2 521.668937 1041.32332 0.20638 0.00010766 1.3936 0.00072699 1.6 0.00083465 522.1729021303752 134.64 0.17679 134.64 134.53 134.71 0 6 4 2 0 0 0 0.87888 1 26656 26656 2.0598 0 1 3239600 + 5663 15118 3483 3486 5943 5943 -0.19568816106061604 DEDTDRDD 8 Unmodified _DEDTDRDD_ 0 0 0 nc|ENSG00000158220|A0FGR9-2|ESYT3;ENST00000486831.5_1_3:138153640-138188991:+|nuORF;ESYT3|p.C770Sfs*5|1|0.25|ENSG00000158220|chr3:138473607-138473607|G/-|frameshift_variant;ESYT3|p.F827Lfs*7|2|0.28|ENSG00000158220|chr3:138476230-138476230|T/-|frameshift_variant;ENSG00000158220|ENST00000389567|ESYT3 nc|ENSG00000158220|A0FGR9-2|ESYT3 nc|ENSG00000158220|A0FGR9-2|ESYT3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27239990234375 2 490.675608 979.336662 NaN NaN NaN NaN NaN NaN NaN 130.13 1 130.13 129.63 130.63 0 0 0 0 0.21486 1 25713 25713 7.2892 0.56607 1 5664 5156 3484 3487 5944 5944 -0.15383242002451425 DEDVEDLRIKF 11 Unmodified _DEDVEDLRIKF_ 0 0 0 REV__ENSG00000203697|ENST00000366872|CAPN8 REV__ENSG00000203697|ENST00000366872|CAPN8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2334289550781 3 460.233146 1377.67761 NaN NaN NaN NaN NaN NaN NaN 145.74 1 140.74 140.24 141.24 -5 0 0 0 0.22632 1 28190 28190 2.732 0 1 + 5665 19495 3485 3488 5945 5945 0.0038781131854648265 DEDWQYTEY 9 Unmodified _DEDWQYTEY_ 0 0 0 REV__ENSG00000127083|ENST00000375550|OMD REV__ENSG00000127083|ENST00000375550|OMD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 416.82965087890625 3 416.827897 1247.46186 NaN NaN NaN NaN NaN NaN NaN 103.06 1 99.04 98.54 99.54 -4.0212 0 0 0 0.19512 1 19814 19814 0.073264 0 1 + 5666 15877 3486 3489 5946 5946 -0.15196949866071918 DEDYESGTM 9 Unmodified _DEDYESGTM_ 0 0 0 REV__tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1 REV__tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.685546875 2 523.684587 1045.35462 NaN NaN NaN NaN NaN NaN NaN 167.38 1 162.59 162.09 163.09 -4.7898 0 0 0 0.19652 1 33749 33749 0.40827 0 1 + 5667 24869 3487 3490 5947 5947 -0.16624243071964884 DEDYLNHLEP 10 Unmodified _DEDYLNHLEP_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;NPLOC4|p.F249Lfs*88|1|0.11|ENSG00000182446|chr17:81604635-81604635|A/-|frameshift_variant ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7650146484375 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 139.85 1 135 134.5 135.5 -4.8492 0 0 0 0.22588 1 26964 26964 6.7232 0.99131 1 5668 6789 3488 3491 5948 5948 -0.07632981703773112 DEDYVQFY 8 Unmodified _DEDYVQFY_ 0 0 0 REV__ENSG00000146233|ENST00000275016|CYP39A1 REV__ENSG00000146233|ENST00000275016|CYP39A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20172119140625 3 360.150312 1077.42911 0.20329 7.3214E-05 -0.74539 -0.00026845 -0.5421 -0.00019524 360.1500576215784 98.573 0.62489 94.304 94.019 94.644 -4.2692 22 17 2 0 0 0 1.0248 1 18891 18891 1.4819 0 1 1710900 + 5669 16878 3489 3492 5949 5949 -0.10651112198252122 DEDYVYNY 8 Unmodified _DEDYVYNY_ 0 0 0 REV__ENSG00000077522|ENST00000366578|ACTN2 REV__ENSG00000077522|ENST00000366578|ACTN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2630615234375 2 540.711462 1079.40837 0.30722 0.00016612 -3.2999 -0.0017843 -2.9927 -0.0016182 541.2114868532228 126.53 0.63974 121.92 121.59 122.23 -4.6172 37 16 3 0 0 0 0.68128 1 24975 24975 16.942 2.3606 1 2618700 + 5670 14367 3490 3493 5950 5950 -0.12815702577950105 DEDYVYNY 8 Unmodified _DEDYVYNY_ 0 0 0 REV__ENSG00000077522|ENST00000366578|ACTN2 REV__ENSG00000077522|ENST00000366578|ACTN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2843017578125 2 540.711462 1079.40837 0.26195 0.00014164 -1.4594 -0.0007891 -1.1974 -0.00064746 540.7108698043377 126.79 0.75038 122.09 121.64 122.4 -4.6998 34 20 2 0 0 0 0.68128 2 24343 24332;24343 16.942 4.4107 1 2377900 + 5671 14367 3490 3493 5951;5952 5952 -0.12815702577950105 DEDYVYNY 8 Unmodified _DEDYVYNY_ 0 0 0 REV__ENSG00000077522|ENST00000366578|ACTN2 REV__ENSG00000077522|ENST00000366578|ACTN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2587890625 2 540.711462 1079.40837 0.26195 0.00014164 -1.4594 -0.0007891 -1.1974 -0.00064746 540.7108698043377 126.79 0.75038 122.09 121.64 122.4 -4.6998 34 20 2 0 0 0 0.9455 1 24383 24383 23.148 6.2061 1 2377900 + 5672 14367 3490 3493 5953 5953 -0.12815702577950105 DEEAPKQV 8 Unmodified _DEEAPKQV_ 0 0 0 ENST00000565367.5_1_15:55611435-55622003:+|nuORF ENST00000565367.5_1_15:55611435-55622003:+|nuORF ENST00000565367.5_1_15:55611435-55622003:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2239685058594 2 458.224539 914.434526 -0.083026 -3.8044E-05 -0.64929 -0.00029752 -0.73231 -0.00033556 458.22417185333103 49.095 1.2554 46.089 45.518 46.774 -3.0068 93 35 4 0 0 0 0.70613 1 9130 9130 13.508 0.97634 1 32412000 5673 11355 3491 3494 5954 5954 -0.0261138861579866 DEECLCGAER 10 Unmodified _DEECLCGAER_ 0 0 0 ENST00000528533.5_1_11:119180598-119181683:-|nuORF ENST00000528533.5_1_11:119180598-119181683:-|nuORF ENST00000528533.5_1_11:119180598-119181683:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2054443359375 3 375.483079 1123.42741 -0.41205 -0.00015472 1.2281 0.00046112 0.81602 0.0003064 375.4836117205837 51.968 0.13397 49.086 48.969 49.103 -2.8824 5 3 2 0 0 0 0.75318 1 9883 9883 4.7159 0.18705 1 428970 5674 10936 3492 3495 5955 5955 -0.1293681255019692 DEECLIIDTE 10 Unmodified _DEECLIIDTE_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2;ICE2|p.R760Tfs*25|1|0.32|ENSG00000128915|chr15:60447987-60447988|-/T|frameshift_variant ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2576904296875 2 590.257919 1178.50128 NaN NaN NaN NaN NaN NaN NaN 65.458 1 62.175 61.675 62.675 -3.2832 0 0 0 0.22588 1 12305 12305 10.074 5.3179 1 5675 3549 3493 3496 5956 5956 -0.08082565906852324 DEECRTGSF 9 Unmodified _DEECRTGSF_ 0 0 0 REV__NOTCH4|p.P1441Lfs*17|1|0.22|ENSG00000204301|chr6:32199139-32199139|G/-|frameshift_variant REV__NOTCH4|p.P1441Lfs*17|1|0.22|ENSG00000204301|chr6:32199139-32199139|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2783203125 2 522.208563 1042.40257 NaN NaN NaN NaN NaN NaN NaN 91.219 1 91.219 90.719 91.719 0 0 0 0 0.23508 1 17823 17823 7.9102 0.62092 1 + 5676 19522 3494 3497 5957 5957 -0.11693124361249829 DEEDDDDYY 9 Unmodified _DEEDDDDYY_ 0 0 0 SV2C|p.D213Kfs*9|1|0.43|ENSG00000122012|chr5:76194973-76194976|CAGA/-|frameshift_variant;ENSG00000122012|ENST00000502798|SV2C SV2C|p.D213Kfs*9|1|0.43|ENSG00000122012|chr5:76194973-76194976|CAGA/-|frameshift_variant SV2C|p.D213Kfs*9|1|0.43|ENSG00000122012|chr5:76194973-76194976|CAGA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.249755859375 2 589.685838 1177.35712 0.27731 0.00016353 -0.94297 -0.00055606 -0.66566 -0.00039253 589.6850214516836 113.17 0.21368 108.71 108.61 108.83 -4.4539 7 5 2 0 0 0 0.88237 1 22312 22312 0.6015 0 1 1712800 5677 3204 3495 3498 5958 5958 -0.22446116133323812 DEEDDDDYY 9 Unmodified _DEEDDDDYY_ 0 0 0 SV2C|p.D213Kfs*9|1|0.43|ENSG00000122012|chr5:76194973-76194976|CAGA/-|frameshift_variant;ENSG00000122012|ENST00000502798|SV2C SV2C|p.D213Kfs*9|1|0.43|ENSG00000122012|chr5:76194973-76194976|CAGA/-|frameshift_variant SV2C|p.D213Kfs*9|1|0.43|ENSG00000122012|chr5:76194973-76194976|CAGA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2760009765625 2 589.685838 1177.35712 0.52115 0.00030731 -0.61592 -0.0003632 -0.094776 -5.5888E-05 589.6830832354215 146.26 0.10345 141.15 141.07 141.17 -5.1108 6 2 3 0 0 0 0.88278 1 28275 28275 2.0598 1.4583 1 1084800 5678 3204 3495 3498 5959 5959 -0.22446116133323812 DEEDDDDYY 9 Unmodified _DEEDDDDYY_ 0 0 0 SV2C|p.D213Kfs*9|1|0.43|ENSG00000122012|chr5:76194973-76194976|CAGA/-|frameshift_variant;ENSG00000122012|ENST00000502798|SV2C SV2C|p.D213Kfs*9|1|0.43|ENSG00000122012|chr5:76194973-76194976|CAGA/-|frameshift_variant SV2C|p.D213Kfs*9|1|0.43|ENSG00000122012|chr5:76194973-76194976|CAGA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2689819335938 2 589.685838 1177.35712 0.51763 0.00030524 3.7623 0.0022186 4.28 0.0025238 589.6881449031296 115.57 0.14026 111.26 111.19 111.33 -4.3136 5 3 2 0 0 0 0.61568 1 22253 22253 0.073264 0 1 453830 5679 3204 3495 3498 5960 5960 -0.22446116133323812 DEEDEEGESL 10 Unmodified _DEEDEEGESL_ 0 0 0 ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 384.16455078125 3 384.478934 1150.41497 -0.18724 -7.1991E-05 -0.43466 -0.00016712 -0.62191 -0.00023911 384.4789250746779 79.946 0.70233 76.436 76.121 76.824 -3.5102 55 19 4 0 0 0 1.1216 1 15602 15602 0.84494 0.43668 1 2028300 5680 6856 3496 3499 5961 5961 -0.15421854207875185 DEEDEEGESL 10 Unmodified _DEEDEEGESL_ 0 0 0 ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 384.478934 1150.41497 -0.79622 -0.00030613 0.47347 0.00018204 -0.32275 -0.00012409 384.47908951695723 80.046 0.58514 76.37 76.009 76.594 -3.676 -0.020295 0.00068483 NaN 0.84494 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1776400 5681 6856 3496 3499 -0.15421854207875185 DEEDEENHY 9 Unmodified _DEEDEENHY_ 0 0 0 REV__ENSG00000148411|ENST00000277554|NACC2 REV__ENSG00000148411|ENST00000277554|NACC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2651977539062 2 590.207272 1178.39999 NaN NaN NaN NaN NaN NaN NaN 131.71 1 127.07 126.57 127.57 -4.6399 0 0 0 0.23508 1 25956 25956 4.756 0 1 + 5682 16976 3497 3500 5962 5962 -0.18207301285224275 DEEDMEPCL 9 Unmodified _DEEDMEPCL_ 0 0 0 ARID4A|p.K653Rfs*19|1|0.3|ENSG00000032219|chr14:58360917-58360917|A/-|frameshift_variant;ARID4A|p.T779Nfs*5|1|0.11|ENSG00000032219|chr14:58364418-58364419|-/A|frameshift_variant;ARID4A|p.I869*|1|0.29|ENSG00000032219|chr14:58364688-58364688|A/-|frameshift_variant;nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ARID4A|p.R1216Dfs*2|1|0.19|ENSG00000032219|chr14:58367001-58367001|A/-|frameshift_variant;ENSG00000032219|ENST00000355431|ARID4A ARID4A|p.K653Rfs*19|1|0.3|ENSG00000032219|chr14:58360917-58360917|A/-|frameshift_variant ARID4A|p.K653Rfs*19|1|0.3|ENSG00000032219|chr14:58360917-58360917|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018127441406 3 360.800185 1079.37873 -0.32027 -0.00011555 1.0578 0.00038164 0.73749 0.00026609 360.80058074582655 102.81 0.63506 98.623 98.272 98.907 -4.1861 25 17 2 0 0 0 0.88237 1 20202 20202 1.1933 0 1 847270 5683 221 3498 3501 5963 5963 -0.15778725909945024 DEEDSLEH 8 Unmodified _DEEDSLEH_ 0 0 0 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 487.69097900390625 2 487.190894 972.367234 0.20702 0.00010086 0.36655 0.00017858 0.57357 0.00027944 487.1912405268777 32.481 0.77178 30.333 29.999 30.771 -2.1483 64 21 5 0 0 0 0.89951 1 5708 5708 0 0 1 20606000 5684 3574 3499 3502 5964 5964 -0.12005463617401801 DEEDSLEH 8 Unmodified _DEEDSLEH_ 0 0 0 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 487.190894 972.367234 0.18053 8.7952E-05 0.54421 0.00026513 0.72474 0.00035309 487.1912634401966 30.426 0.73006 30.426 30.095 30.825 0 0.075029 0.0001959 NaN 0 60 20 4 NaN NaN NaN NaN 0 NaN NaN 0 32683000 5685 3574 3499 3502 -0.12005463617401801 DEEDSLEH 8 Unmodified _DEEDSLEH_ 0 0 0 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 487.190894 972.367234 0.27089 0.00013198 0.23009 0.0001121 0.50098 0.00024407 487.19121487230586 32.533 0.67393 30.303 29.972 30.646 -2.2305 -0.048303 -0.00011017 NaN 0 64 18 5 NaN NaN NaN NaN 0 NaN NaN 0 26139000 5686 3574 3499 3502 -0.12005463617401801 DEEDSLEH 8 Unmodified _DEEDSLEH_ 0 0 0 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 487.190894 972.367234 0.4014 0.00019556 0.14316 6.9744E-05 0.54456 0.0002653 487.1911571484407 32.368 0.70155 30.342 30.008 30.709 -2.0264 -0.0088644 -0.00019488 NaN 0 65 19 5 NaN NaN NaN NaN 0 NaN NaN 0 24971000 5687 3574 3499 3502 -0.12005463617401801 DEEDYANNP 9 Unmodified _DEEDYANNP_ 0 0 0 REV__nc|ENSG00000118004|Q9BWP8-9|COLEC11 REV__nc|ENSG00000118004|Q9BWP8-9|COLEC11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2695922851562 2 533.701625 1065.3887 0.16921 9.0309E-05 -3.5216 -0.0018795 -3.3524 -0.0017892 533.6989880843818 27.198 0.26966 27.198 27.115 27.385 0 9 7 2 0 0 0 0.87258 1 4793 4793 1.8442 0.19162 1 456460 + 5688 24013 3500 3503 5965 5965 -0.14138078588712233 DEEEDSDEN 9 Unmodified _DEEEDSDEN_ 0 0 0 nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A;PPP1R9A|p.K495Nfs*3|2|0.28|ENSG00000158528|chr7:95111344-95111344|A/-|frameshift_variant;PPP1R9A|p.K592Nfs*5|1|0.07|ENSG00000158528|chr7:95198366-95198366|A/-|frameshift_variant;PPP1R9A|p.T716Nfs*11|1|0.27|ENSG00000158528|chr7:95250065-95250066|-/A|frameshift_variant nc|ENSG00000158528|Q9ULJ8|PPP1R9A nc|ENSG00000158528|Q9ULJ8|PPP1R9A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2627563476562 2 541.175637 1080.33672 NaN NaN NaN NaN NaN NaN NaN 103.23 1 98.88 98.38 99.38 -4.346 0 0 0 0.23508 1 19768 19768 7.2892 2.96 1 5689 5170 3501 3504 5966 5966 -0.20023286793116313 DEEEEKTED 9 Unmodified _DEEEEKTED_ 0 0 0 REV__ENSG00000134321|ENST00000382040|RSAD2 REV__ENSG00000134321|ENST00000382040|RSAD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21112060546875 3 375.147296 1122.42006 NaN NaN NaN NaN NaN NaN NaN 33.325 1 33.325 32.825 33.825 0 0 0 0 0.19677 1 6080 6080 0.40827 0 1 + 5690 16205 3502 3505 5967 5967 -0.1362555034527304 DEEEETDL 8 Unmodified _DEEEETDL_ 0 0 0 REV__RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant REV__RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2762756347656 2 490.190559 978.366566 NaN NaN NaN NaN NaN NaN NaN 125.35 1 125.35 124.85 125.85 0 0 0 0 0.21486 1 24723 24723 9.3474 3.587 1 + 5691 19428 3503 3506 5968 5968 -0.12348303057126486 DEEEHSAP 8 Unmodified _DEEEHSAP_ 0 0 0 ENST00000368331.5_1_1:155719648-155719831:-|nuORF ENST00000368331.5_1_1:155719648-155719831:-|nuORF ENST00000368331.5_1_1:155719648-155719831:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 457.18231201171875 2 457.180329 912.346105 NaN NaN NaN NaN NaN NaN NaN 100.63 1 96.333 95.833 96.833 -4.297 0 0 0 0.23025 1 19251 19251 1.4551 1.148 1 5692 9094 3504 3507 5969 5969 -0.11357428926282864 DEEEPHEQGCS 11 Unmodified _DEEEPHEQGCS_ 0 0 0 REV__AMER3|p.N67Qfs*106|1|0.12|ENSG00000178171|chr2:130762266-130762267|-/C|frameshift_variant REV__AMER3|p.N67Qfs*106|1|0.12|ENSG00000178171|chr2:130762266-130762267|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7544555664062 2 630.227681 1258.44081 0.50172 0.0003162 -4.2225 -0.0026612 -3.7208 -0.002345 630.2230804870462 126.47 0.10417 121.67 121.6 121.7 -4.7958 4 2 2 0 0 0 0.85028 1 24262 24262 22.736 8.8302 1 937800 + 5693 13036 3505 3508 5970 5970 -0.1780728323724361 DEEEPNLLK 9 Unmodified _DEEEPNLLK_ 0 0 0 REV__ENSG00000080572|ENST00000372453|DNAAF6 REV__ENSG00000080572|ENST00000372453|DNAAF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7911376953125 2 543.769311 1085.52407 -0.017206 -9.3564E-06 0.41162 0.00022383 0.39441 0.00021447 543.7694547796906 80.236 0.69437 76.409 76.118 76.813 -3.8272 50 19 3 0 0 0 0.15889 1 15183 15183 22.736 0 1 10161000 + 5694 14412 3506 3509 5971 5971 -0.015271787271103676 DEEERLLG 8 Unmodified _DEEERLLG_ 0 0 0 ENST00000416132.5_1_2:3687900-3691705:+|nuORF ENST00000416132.5_1_2:3687900-3691705:+|nuORF ENST00000416132.5_1_2:3687900-3691705:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24542236328125 2 480.735271 959.45599 -0.10865 -5.223E-05 0.31727 0.00015252 0.20862 0.00010029 480.7353767990116 52.294 0.93935 49.199 48.716 49.656 -3.0954 71 26 4 0 0 0 0.44108 1 9706 9706 38.151 9.6643 1 11542000 5695 9620 3507 3510 5972 5972 -0.02536003587090363 DEEFARTL 8 Unmodified _DEEFARTL_ 0 0 0 RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2657470703125 2 490.737814 979.461075 0.54012 0.00026506 -0.42262 -0.00020739 0.1175 5.7663E-05 490.7375971162274 77.931 0.73534 77.931 77.634 78.37 0 49 20 3 0 0 0 0.35319 1 15152 15152 43.772 14.691 1 8230900 5696 1169 3508 3511 5973 5973 -0.02947699724472841 DEEFARTL 8 Unmodified _DEEFARTL_ 0 0 0 RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2741394042969 2 490.737814 979.461075 0.11615 5.7002E-05 -0.063916 -3.1366E-05 0.052238 2.5635E-05 490.737768191388 81.528 0.79653 77.971 77.511 78.307 -3.557 53 22 3 0 0 0 0.18575 1 15920 15920 66.457 24.617 1 9835900 5697 1169 3508 3511 5974 5974 -0.02947699724472841 DEEFARTL 8 Unmodified _DEEFARTL_ 0 0 0 RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26531982421875 2 490.737814 979.461075 0.1205 5.9133E-05 -0.014856 -7.2904E-06 0.10564 5.1843E-05 490.7377554362351 81.828 0.72073 77.989 77.611 78.331 -3.8392 53 20 3 0 0 0 0.0028501 1 15568 15568 122.18 40.315 1 7522900 5698 1169 3508 3511 5975 5975 -0.02947699724472841 DEEFARTL 8 Unmodified _DEEFARTL_ 0 0 0 RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25726318359375 2 490.737814 979.461075 -0.40542 -0.00019895 0.49093 0.00024092 0.085511 4.1964E-05 490.73803161336997 81.719 0.80196 78.031 77.592 78.394 -3.6879 56 22 3 0 0 0 0.12244 1 15604 15604 89.401 7.5367 1 8597900 5699 1169 3508 3511 5976 5976 -0.02947699724472841 DEEIIVKAM 9 Oxidation (M) _DEEIIVKAM(Oxidation (M))_ DEEIIVKAM(1) DEEIIVKAM(50) 0 0 1 ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF ENSG00000146574|ENST00000316731|CCZ1B ENSG00000146574|ENST00000316731|CCZ1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2872314453125 2 532.270632 1062.52671 -0.14293 -7.6078E-05 0.21215 0.00011292 0.069217 3.6842E-05 532.2707483297621 57.314 0.55783 57.314 57.022 57.58 0 31 15 3 0 0 0 0.11717 1 10949 10949 49.933 17.147 1 3132400 5700 3237 3509 3512 5977 5977 48 -0.002050465937827539 DEEIIVKAM 9 Oxidation (M) _DEEIIVKAM(Oxidation (M))_ DEEIIVKAM(1) DEEIIVKAM(42) 0 0 1 ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF ENSG00000146574|ENST00000316731|CCZ1B ENSG00000146574|ENST00000316731|CCZ1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2739868164062 2 532.270632 1062.52671 0.45946 0.00024456 -0.36593 -0.00019477 0.093526 4.9781E-05 532.270348374584 59.935 0.62688 56.621 56.243 56.87 -3.3139 38 17 3 0 0 0 0.16619 1 11126 11126 41.84 15.571 1 2310400 5701 3237 3509 3512 5978 5978 48 -0.002050465937827539 DEEIIVKAM 9 Oxidation (M) _DEEIIVKAM(Oxidation (M))_ 0 0 1 ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF ENSG00000146574|ENST00000316731|CCZ1B ENSG00000146574|ENST00000316731|CCZ1B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.270632 1062.52671 -0.10137 -5.3959E-05 -0.13142 -6.995E-05 -0.23279 -0.00012391 532.2707603507473 56.643 0.69271 56.643 56.294 56.986 0 0.049914 4.2921E-05 NaN 41.84 44 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2970400 5702 3237 3509 3512 48 -0.002050465937827539 DEEIIVKAM 9 Oxidation (M) _DEEIIVKAM(Oxidation (M))_ 0 0 1 ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF ENSG00000146574|ENST00000316731|CCZ1B ENSG00000146574|ENST00000316731|CCZ1B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.270632 1062.52671 0.04267 2.2712E-05 0.12633 6.7243E-05 0.169 8.9955E-05 532.2708994309585 60.144 0.55441 57.21 56.889 57.444 -2.9333 -0.048568 0.00016108 NaN 49.933 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4666200 5703 3237 3509 3512 48 -0.002050465937827539 DEEIIVKAM 9 Oxidation (M) _DEEIIVKAM(Oxidation (M))_ 0 0 1 ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF ENSG00000146574|ENST00000316731|CCZ1B ENSG00000146574|ENST00000316731|CCZ1B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.270632 1062.52671 0.45652 0.00024299 -0.57857 -0.00030795 -0.12205 -6.4964E-05 532.2704545635139 60.556 0.66142 57.242 56.907 57.568 -3.3139 -0.016695 -0.00058931 NaN 49.933 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3750600 5704 3237 3509 3512 48 -0.002050465937827539 DEEIIVKAM 9 Unmodified _DEEIIVKAM_ 0 0 0 ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF ENSG00000146574|ENST00000316731|CCZ1B ENSG00000146574|ENST00000316731|CCZ1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69873046875 2 524.273175 1046.5318 0.59759 0.0003133 -0.52795 -0.00027679 0.069639 3.651E-05 524.272944845874 101.14 0.7417 101.14 100.76 101.5 0 52 20 3 0 0 0 0.075749 1 19847 19847 69.105 49.848 1 13074000 5705 3237 3509 3513 5979 5979 0.01039257268826077 DEEIIVKAM 9 Unmodified _DEEIIVKAM_ 0 0 0 ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF ENSG00000146574|ENST00000316731|CCZ1B ENSG00000146574|ENST00000316731|CCZ1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6834106445312 2 524.273175 1046.5318 -0.38192 -0.00020023 0.40074 0.0002101 0.018816 9.8646E-06 524.2734602515262 105.41 1.4334 101.03 100.59 102.03 -4.3764 99 40 5 0 0 0 0.075749 1 20154 20154 51.63 36.792 1 23468000 5706 3237 3509 3513 5980 5980 0.01039257268826077 DEEIIVKAM 9 Unmodified _DEEIIVKAM_ 0 0 0 ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF ENSG00000146574|ENST00000316731|CCZ1B ENSG00000146574|ENST00000316731|CCZ1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6898193359375 2 524.273175 1046.5318 0.80408 0.00042156 -0.67798 -0.00035545 0.1261 6.611E-05 524.272807804418 105.15 1.5076 101.05 100.55 102.05 -4.0913 76 42 3 0 0 0 0.27865 1 20284 20284 41.84 22.583 1 17625000 5707 3237 3509 3513 5981 5981 0.01039257268826077 DEEIYKEFF 9 Unmodified _DEEIYKEFF_ 0 0 0 MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1;nc|ENSG00000133895|O00255-3|MEN1 MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 610.6726684570312 2 610.279512 1218.54447 0.49712 0.00030339 0.0923 5.6329E-05 0.58942 0.00035971 610.2794025942283 164.77 0.17328 159.72 159.63 159.8 -5.0446 7 4 2 0 0 0 0.69192 1 32154 32154 20.454 8.8133 1 6710100 5708 3821 3510 3514 5982 5982 -0.056060080672978074 DEEIYKEFF 9 Unmodified _DEEIYKEFF_ 0 0 0 MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1;nc|ENSG00000133895|O00255-3|MEN1 MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 610.279512 1218.54447 1.1407 0.00069613 -0.30612 -0.00018682 0.83456 0.00050932 610.2799380544309 164.42 0.28119 159.63 159.57 159.85 -4.7898 -0.044943 -0.00025581 NaN 20.454 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 10104000 5709 3821 3510 3514 -0.056060080672978074 DEELHAPGL 9 Unmodified _DEELHAPGL_ 0 0 0 REV__ENST00000485925.5_1_9:136321326-136321824:+|nuORF REV__ENST00000485925.5_1_9:136321326-136321824:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2648010253906 2 490.737814 979.461075 0.11615 5.7002E-05 -0.063916 -3.1366E-05 0.052238 2.5635E-05 490.737768191388 81.528 0.79653 77.971 77.511 78.307 -3.557 53 22 3 0 0 0 0.050517 1 15952 15952 70.716 0.38353 1 9835900 + 5710 22228 3511 3515 5983 5983 -0.02947699724472841 DEELPEQKV 9 Unmodified _DEELPEQKV_ 0 0 0 REV__nc|ENSG00000075426|P15408-3|FOSL2 REV__nc|ENSG00000075426|P15408-3|FOSL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7883911132812 2 543.769311 1085.52407 0.57716 0.00031384 -0.28911 -0.00015721 0.28805 0.00015663 543.769060070075 76.436 0.73917 76.436 76.063 76.802 0 51 20 4 0 0 0 0.46541 1 14920 14920 21.747 1.293 1 4869000 + 5711 14331 3512 3516 5984 5984 -0.015271787270876303 DEENDSNHS 9 Unmodified _DEENDSNHS_ 0 0 0 REV__nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1 REV__nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.688720703125 2 523.686507 1045.35846 -0.45251 -0.00023697 0.11721 6.1381E-05 -0.3353 -0.00017559 524.1863489706816 142.62 0.17384 137.6 137.48 137.65 -5.0261 7 4 2 0 0 0 0.56709 1 27494 27494 0.073264 0.064987 1 1939500 + 5712 19512 3513 3517 5985 5985 -0.16240437253873097 DEENHNTD 8 Unmodified _DEENHNTD_ 0 0 0 REV__nc|ENSG00000114062|Q05086-2|UBE3A REV__nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 488.1837158203125 2 487.178318 972.342082 0.43743 0.00021311 -0.3884 -0.00018922 0.049033 2.3888E-05 487.1771530087466 105.21 1.1587 105.21 104.65 105.81 0 108 32 5 0 0 0 8448 1 20627 20627 0.68139 0.16497 1 10551000 + 5713 15362 3514 3518 5986 5986 -0.14519518419990618 DEENHNTD 8 Unmodified _DEENHNTD_ 0 0 0 REV__nc|ENSG00000114062|Q05086-2|UBE3A REV__nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 487.178318 972.342082 -0.28491 -0.0001388 -1.0027 -0.0004885 -1.2876 -0.0006273 487.177644279251 109.89 0.93707 105.51 104.92 105.86 -4.3776 0.089796 -0.0001148 NaN 0.68139 46 26 2 NaN NaN NaN NaN 0 NaN NaN 0 2201900 + 5714 15362 3514 3518 -0.14519518419990618 DEENHNTD 8 Unmodified _DEENHNTD_ 0 0 0 REV__nc|ENSG00000114062|Q05086-2|UBE3A REV__nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 487.178318 972.342082 -0.061638 -3.0029E-05 -1.0084 -0.00049128 -1.0701 -0.00052131 487.1775513001424 109.86 0.84443 105.41 105.02 105.86 -4.4518 -0.011478 -0.00012036 NaN 0.68139 42 23 2 NaN NaN NaN NaN 0 NaN NaN 0 2358500 + 5715 15362 3514 3518 -0.14519518419990618 DEENHNTD 8 Unmodified _DEENHNTD_ 0 0 0 REV__nc|ENSG00000114062|Q05086-2|UBE3A REV__nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 487.178318 972.342082 0.40524 0.00019742 -0.9092 -0.00044294 -0.50396 -0.00024552 487.17725271867454 109.74 0.98923 105.55 104.87 105.86 -4.1826 0.13417 -2.3682E-05 NaN 0.68139 54 27 3 NaN NaN NaN NaN 0 NaN NaN 0 2112800 + 5716 15362 3514 3518 -0.14519518419990618 DEENKVPSY 9 Unmodified _DEENKVPSY_ 0 0 0 REV__ENSG00000115414|ENST00000354785|FN1 REV__ENSG00000115414|ENST00000354785|FN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2625732421875 2 540.745836 1079.47712 0.22455 0.00012143 0.41254 0.00022308 0.63709 0.0003445 540.7458295354676 100.83 0.72235 96.672 96.187 96.91 -4.1594 36 20 3 0 0 0 0.57447 1 19730 19730 14.838 6.6827 1 2293900 + 5717 15427 3515 3519 5987 5987 -0.05944038278221342 DEENLPEKL 9 Unmodified _DEENLPEKL_ 0 0 0 nc|ENSG00000126878|Q9BQI0-4|AIF1L;nc|ENSG00000126878|Q9BQI0-3|AIF1L;ENSG00000126878|ENST00000247291|AIF1L;ENST00000472942.5_1_9:133986989-133989557:+|nuORF;nc|ENSG00000126878|Q9BQI0-2|AIF1L;ENST00000478257.1_1_9:133972232-133987208:+|nuORF nc|ENSG00000126878|Q9BQI0-4|AIF1L;ENST00000478257.1_1_9:133972232-133987208:+|nuORF nc|ENSG00000126878|Q9BQI0-4|AIF1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78173828125 2 543.769311 1085.52407 0.57716 0.00031384 -0.28911 -0.00015721 0.28805 0.00015663 543.769060070075 76.436 0.73917 76.436 76.063 76.802 0 51 20 4 0 0 0 4.8487E-06 2 14843 14829;14843 140.63 74.176 1 4869000 5718 3453;10313 3516 3520 5988;5989 5989 -0.015271787270876303 DEENLPEKL 9 Unmodified _DEENLPEKL_ 0 0 0 nc|ENSG00000126878|Q9BQI0-4|AIF1L;nc|ENSG00000126878|Q9BQI0-3|AIF1L;ENSG00000126878|ENST00000247291|AIF1L;ENST00000472942.5_1_9:133986989-133989557:+|nuORF;nc|ENSG00000126878|Q9BQI0-2|AIF1L;ENST00000478257.1_1_9:133972232-133987208:+|nuORF nc|ENSG00000126878|Q9BQI0-4|AIF1L;ENST00000478257.1_1_9:133972232-133987208:+|nuORF nc|ENSG00000126878|Q9BQI0-4|AIF1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7696533203125 2 543.769311 1085.52407 0.25211 0.00013709 0.22114 0.00012025 0.47325 0.00025734 543.7693601231152 79.978 0.67204 76.467 76.083 76.755 -3.5102 55 18 5 0 0 0 2.9164E-05 3 15608 15564;15608;15653 132.38 63.275 1 11205000 5719 3453;10313 3516 3520 5990;5991;5992 5991 -0.015271787270876303 DEENLPEKL 9 Unmodified _DEENLPEKL_ 0 0 0 nc|ENSG00000126878|Q9BQI0-4|AIF1L;nc|ENSG00000126878|Q9BQI0-3|AIF1L;ENSG00000126878|ENST00000247291|AIF1L;ENST00000472942.5_1_9:133986989-133989557:+|nuORF;nc|ENSG00000126878|Q9BQI0-2|AIF1L;ENST00000478257.1_1_9:133972232-133987208:+|nuORF nc|ENSG00000126878|Q9BQI0-4|AIF1L;ENST00000478257.1_1_9:133972232-133987208:+|nuORF nc|ENSG00000126878|Q9BQI0-4|AIF1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7808837890625 2 543.769311 1085.52407 -0.017206 -9.3564E-06 0.41162 0.00022383 0.39441 0.00021447 543.7694547796906 80.236 0.69437 76.409 76.118 76.813 -3.8272 50 19 3 0 0 0 4.8487E-06 3 15203 15197;15203;15251 140.63 74.851 1 10161000 5720 3453;10313 3516 3520 5993;5994;5995 5994 -0.015271787270876303 DEENLPEKL 9 Unmodified _DEENLPEKL_ 0 0 0 nc|ENSG00000126878|Q9BQI0-4|AIF1L;nc|ENSG00000126878|Q9BQI0-3|AIF1L;ENSG00000126878|ENST00000247291|AIF1L;ENST00000472942.5_1_9:133986989-133989557:+|nuORF;nc|ENSG00000126878|Q9BQI0-2|AIF1L;ENST00000478257.1_1_9:133972232-133987208:+|nuORF nc|ENSG00000126878|Q9BQI0-4|AIF1L;ENST00000478257.1_1_9:133972232-133987208:+|nuORF nc|ENSG00000126878|Q9BQI0-4|AIF1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7695922851562 2 543.769311 1085.52407 -0.06686 -3.6357E-05 0.44139 0.00024002 0.37453 0.00020366 543.7695460054807 80.234 0.65723 76.558 76.181 76.839 -3.676 48 18 3 0 0 0 4.8487E-06 3 15263 15246;15263;15317 140.63 71.528 1 10078000 5721 3453;10313 3516 3520 5996;5997;5998 5997 -0.015271787270876303 DEEPDFDP 8 Unmodified _DEEPDFDP_ 0 0 0 REV__nc|ENSG00000066027|Q15172-2|PPP2R5A REV__nc|ENSG00000066027|Q15172-2|PPP2R5A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7653503417969 2 482.182537 962.350522 0.56023 0.00027013 -0.091935 -4.4329E-05 0.4683 0.0002258 482.1827247611838 109.51 0.73905 105.33 104.95 105.68 -4.1826 53 20 4 0 0 0 1.0147 1 21088 21088 9.3474 9.3474 1 5559300 + 5722 14197 3517 3521 5999 5999 -0.13215964503365285 DEEPGEML 8 Unmodified _DEEPGEML_ 0 0 0 REV__nc|ENSG00000090565|O75154-2|RAB11FIP3 REV__nc|ENSG00000090565|O75154-2|RAB11FIP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2467956542969 2 460.189308 918.364063 0.49844 0.00022938 0.3471 0.00015973 0.84554 0.00038911 460.1893607799925 115.73 1.0568 111.37 110.93 111.99 -4.3585 45 29 2 0 0 0 0.96284 1 22304 22304 13.508 0 1 1471100 + 5723 14550 3518 3522 6000 6000 -0.09838429995772913 DEEPLTEMCL 10 Unmodified _DEEPLTEMCL_ 0 0 0 REV__ENSG00000235034|ENST00000425202|C19orf81 REV__ENSG00000235034|ENST00000425202|C19orf81 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2523803710938 2 590.24904 1178.48353 NaN NaN NaN NaN NaN NaN NaN 114.66 1 110.11 109.61 110.61 -4.555 0 0 0 0.22588 1 22016 22016 6.7232 1.4263 1 + 5724 19761 3519 3523 6001 6001 -0.09857604433364031 DEEQMNRVRN 10 Unmodified _DEEQMNRVRN_ 0 0 0 FBXW7|p.V37Rfs*24|1|0.48|ENSG00000109670|chr4:152411689-152411695|CCTCTAC/-|frameshift_variant FBXW7|p.V37Rfs*24|1|0.48|ENSG00000109670|chr4:152411689-152411695|CCTCTAC/-|frameshift_variant FBXW7|p.V37Rfs*24|1|0.48|ENSG00000109670|chr4:152411689-152411695|CCTCTAC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 431.0934753417969 3 430.866692 1289.57825 -0.32481 -0.00013995 0.46431 0.00020006 0.1395 6.0105E-05 430.8669261180442 46.495 0.41634 43.628 43.406 43.823 -2.8666 20 11 2 0 0 0 0.91149 1 8457 8457 0.69767 0 1 1336500 5725 11809 3520 3524 6002 6002 -0.0549590984714996 DEERMITHF 9 Unmodified _DEERMITHF_ 0 0 0 nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000568067.1_1_15:42503908-42510186:-|nuORF nc|ENSG00000103978|Q8NBN3-3|TMEM87A nc|ENSG00000103978|Q8NBN3-3|TMEM87A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2488403320312 2 589.268955 1176.52336 0.54556 0.00032148 -1.48 -0.0008721 -0.9344 -0.00055061 589.2688709928901 83.804 1.235 79.895 79.499 80.734 -3.9093 86 34 4 0 0 0 0.11219 2 15880 15880;15900 51.63 20.361 1 3792400 5726 2212 3521 3525 6003;6004 6003 -0.057842966478119706 DEERMITHF 9 Unmodified _DEERMITHF_ 0 0 0 nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000568067.1_1_15:42503908-42510186:-|nuORF nc|ENSG00000103978|Q8NBN3-3|TMEM87A nc|ENSG00000103978|Q8NBN3-3|TMEM87A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2554931640625 2 589.268955 1176.52336 -0.051558 -3.0381E-05 -1.1944 -0.00070379 -1.2459 -0.00073418 589.2692090717311 83.548 1.4637 79.849 79.455 80.919 -3.6985 99 41 4 0 0 0 0.13708 3 15907 15907;15937;15982 46.021 18.392 1 5183100 5727 2212 3521 3525 6005;6006;6007 6005 -0.057842966478119706 DEERNKKF 8 Unmodified _DEERNKKF_ 0 0 0 REV__CACNA2D1|p.Y629Tfs*3|1|0.3|ENSG00000153956|chr7:81984680-81984680|A/-|frameshift_variant REV__CACNA2D1|p.Y629Tfs*3|1|0.3|ENSG00000153956|chr7:81984680-81984680|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2698364257812 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 72.441 1 69.13 68.63 69.63 -3.3107 0 0 0 0.22636 1 14118 14118 3.5871 2.3722 1 + 5728 13239 3522 3526 6008 6008 -0.004609195675357114 DEERNKKF 8 Unmodified _DEERNKKF_ 0 0 0 REV__CACNA2D1|p.Y629Tfs*3|1|0.3|ENSG00000153956|chr7:81984680-81984680|A/-|frameshift_variant REV__CACNA2D1|p.Y629Tfs*3|1|0.3|ENSG00000153956|chr7:81984680-81984680|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2696533203125 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 72.514 1 68.975 68.475 69.475 -3.5385 0 0 0 0.22657 1 13749 13749 1.7423 0 1 + 5729 13239 3522 3526 6009 6009 -0.004609195675357114 DEERYNRYCVP 11 Unmodified _DEERYNRYCVP_ 0 0 0 REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7777404785156 3 481.882231 1442.62486 0.12269 5.9124E-05 0.42305 0.00020386 0.54574 0.00026298 482.2171347296687 59.58 1.0526 56.266 55.854 56.907 -3.3139 52 29 3 0 0 0 0.88591 1 11163 11163 0.03141 0.0052036 1 1982700 + 5730 23940 3523 3527 6010 6010 -0.07874470015894985 DEERYNRYCVP 11 Unmodified _DEERYNRYCVP_ 0 0 0 REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77032470703125 3 481.882231 1442.62486 0.044039 2.1222E-05 0.3956 0.00019063 0.43964 0.00021185 481.88218630538427 59.425 0.8025 56.202 55.945 56.747 -3.2237 34 22 2 0 0 0 0.88591 1 11191 11191 0.03141 0 1 3085400 + 5731 23940 3523 3527 6011 6011 -0.07874470015894985 DEERYNRYCVP 11 Unmodified _DEERYNRYCVP_ 0 0 0 REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 481.882231 1442.62486 -0.14569 -7.0204E-05 0.31958 0.000154 0.17389 8.3797E-05 481.882342710653 56.062 0.56524 56.062 55.728 56.294 0 -0.17328 -0.00011169 NaN 0.03141 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2700000 + 5732 23940 3523 3527 -0.07874470015894985 DEESDSSEAL 10 Unmodified _DEESDSSEAL_ 0 0 0 REV__ENSG00000148843|ENST00000369797|PDCD11 REV__ENSG00000148843|ENST00000369797|PDCD11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2619018554688 2 541.212023 1080.40949 0.15729 8.5129E-05 -2.4271 -0.0013136 -2.2698 -0.0012285 541.7126127564721 83.143 0.68761 79.269 78.916 79.604 -3.8736 51 19 4 0 0 0 0.871 1 15841 15841 10.074 5.3179 1 4338700 + 5733 16991 3524 3528 6012 6012 -0.12749532999714575 DEESIDIF 8 Unmodified _DEESIDIF_ 0 0 0 REV__nc|ENSG00000149100|Q7L2H7-2|EIF3M REV__nc|ENSG00000149100|Q7L2H7-2|EIF3M MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 484.25567626953125 2 484.21638 966.418207 NaN NaN NaN NaN NaN NaN NaN 71.594 1 67.967 67.467 68.467 -3.6275 0 0 0 0.21486 1 13505 13505 14.582 0 1 + 5734 24092 3525 3529 6013 6013 -0.06634514572567696 DEETMEPAQ 9 Unmodified _DEETMEPAQ_ 0 0 0 REV__nc|ENSG00000185739|Q86TD4-1|SRL REV__nc|ENSG00000185739|Q86TD4-1|SRL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 350.4842224121094 3 350.474578 1048.40191 0.30143 0.00010564 0.24316 8.522E-05 0.54459 0.00019086 350.4747064328077 101.05 0.23642 96.756 96.572 96.808 -4.297 11 6 2 0 0 0 0.50726 1 19340 19340 1.2148 0 1 1005800 + 5735 24209 3526 3530 6014 6014 -0.12035963800985883 DEETTETQI 9 Unmodified _DEETTETQI_ 0 0 0 REV__nc|ENSG00000067445|Q12816-2|TRO REV__nc|ENSG00000067445|Q12816-2|TRO MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2666625976562 2 533.232758 1064.45096 0.44754 0.00023864 3.3939 0.0018097 3.8414 0.0020484 533.2356126176754 154.59 0.64188 149.34 149.05 149.69 -5.2526 29 15 3 0 0 0 0.28819 1 29977 29977 32.305 5.4218 1 1576900 + 5736 14213 3527 3531 6015 6015 -0.07868352240370768 DEFANLIQH 9 Unmodified _DEFANLIQH_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7749633789062 2 543.764363 1085.51417 0.44265 0.0002407 -0.56072 -0.0003049 -0.11807 -6.4202E-05 543.7640692775414 109.1 0.55926 109.1 108.77 109.33 0 28 15 2 0 0 0 0.029716 1 21422 21422 81.89 56.491 1 2974000 5737 4558 3528 3532 6016 6016 -0.025163219418118388 DEFANLIQH 9 Unmodified _DEFANLIQH_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78955078125 2 543.764363 1085.51417 0.092077 5.0068E-05 0.029681 1.6139E-05 0.12176 6.6208E-05 543.7644829370038 113.5 0.59689 109.05 108.76 109.35 -4.4538 29 16 2 0 0 0 0.010349 5 22377 22366;22369;22374;22377;22389 103.75 74.667 1 3043900 5738 4558 3528 3532 6017;6018;6019;6020;6021 6020 -0.025163219418118388 DEFANLIQH 9 Unmodified _DEFANLIQH_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7840576171875 2 543.764363 1085.51417 0.10515 5.7179E-05 0.12619 6.8618E-05 0.23134 0.0001258 543.7644700337347 113.66 0.69686 109.13 108.85 109.55 -4.5259 31 19 2 0 0 0 0.09143 2 21789 21789;21874 58.679 35.53 1 2944100 5739 4558 3528 3532 6022;6023 6022 -0.025163219418118388 DEFANLIQH 9 Unmodified _DEFANLIQH_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7864379882812 2 543.764363 1085.51417 0.64798 0.00035235 -0.38615 -0.00020998 0.26183 0.00014237 543.7642038493267 113.39 0.59523 109.12 108.85 109.44 -4.2725 29 16 2 0 0 0 0.029716 1 21861 21861 81.89 57.87 1 2876900 5740 4558 3528 3532 6024 6024 -0.025163219418118388 DEFARAPR 8 Unmodified _DEFARAPR_ 0 0 0 REV__ENSG00000204950|ENST00000378075|LRRC10B REV__ENSG00000204950|ENST00000378075|LRRC10B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2458190917969 2 481.246141 960.477728 NaN NaN NaN NaN NaN NaN NaN 107.47 1 103.06 102.56 103.56 -4.4121 0 0 0 0.20896 1 20620 20620 18.135 3.5533 1 + 5741 19574 3529 3533 6025 6025 -0.004091540478725619 DEFFDILVP 9 Unmodified _DEFFDILVP_ 0 0 0 REV__ENSG00000113905|ENST00000232003|HRG REV__ENSG00000113905|ENST00000232003|HRG MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7785034179688 2 547.773865 1093.53318 NaN NaN NaN NaN NaN NaN NaN 83.273 1 79.665 79.165 80.165 -3.6079 0 0 0 0.23508 1 16277 16277 10.824 2.9138 1 + 5742 15356 3530 3534 6026 6026 -0.00984785370769714 DEFFDILVP 9 Unmodified _DEFFDILVP_ 0 0 0 REV__ENSG00000113905|ENST00000232003|HRG REV__ENSG00000113905|ENST00000232003|HRG MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7723999023438 2 547.773865 1093.53318 NaN NaN NaN NaN NaN NaN NaN 83.325 1 79.626 79.126 80.126 -3.6985 0 0 0 0.23508 1 15905 15905 10.824 2.2306 1 + 5743 15356 3530 3534 6027 6027 -0.00984785370769714 DEFFIPREV 9 Unmodified _DEFFIPREV_ 0 0 0 ENST00000483138.5_1_1:33093465-33116130:-|nuORF;ENSG00000176261|ENST00000468695|ZBTB8OS ENST00000483138.5_1_1:33093465-33116130:-|nuORF ENST00000483138.5_1_1:33093465-33116130:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3214721679688 2 576.290214 1150.56587 0.14227 8.1988E-05 0.39752 0.00022909 0.53979 0.00031108 576.2905752306692 153.36 0.81807 148.6 148.33 149.15 -4.7684 31 22 2 0 0 0 0.58395 1 30519 30519 34.932 16.786 1 3659400 5744 6459 3531 3535 6028 6028 -0.0033857824791994062 DEFFIPREV 9 Unmodified _DEFFIPREV_ 0 0 0 ENST00000483138.5_1_1:33093465-33116130:-|nuORF;ENSG00000176261|ENST00000468695|ZBTB8OS ENST00000483138.5_1_1:33093465-33116130:-|nuORF ENST00000483138.5_1_1:33093465-33116130:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3359375 2 576.290214 1150.56587 0.25698 0.00014809 0.35446 0.00020427 0.61144 0.00035237 576.2902916663174 153.97 0.59418 148.7 148.33 148.92 -5.2669 28 16 2 0 0 0 0.16539 2 29848 29848;29882 41.956 28.072 1 4430600 5745 6459 3531 3535 6029;6030 6029 -0.0033857824791994062 DEFFIPREV 9 Unmodified _DEFFIPREV_ 0 0 0 ENST00000483138.5_1_1:33093465-33116130:-|nuORF;ENSG00000176261|ENST00000468695|ZBTB8OS ENST00000483138.5_1_1:33093465-33116130:-|nuORF ENST00000483138.5_1_1:33093465-33116130:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3148193359375 2 576.290214 1150.56587 0.3944 0.00022729 -0.35153 -0.00020258 0.042874 2.4708E-05 576.7917699291272 153.84 0.76019 148.62 148.25 149.01 -5.2209 31 21 2 0 0 0 0.50419 1 29871 29871 19.362 10.617 1 2782800 5746 6459 3531 3535 6031 6031 -0.0033857824791994062 DEFGNSKY 8 Unmodified _DEFGNSKY_ 0 0 0 ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENSG00000137947|ENST00000370500|GTF2B ENSG00000137947|ENST00000370500|GTF2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2351379394531 2 480.208889 958.403226 -0.12972 -6.2291E-05 0.58645 0.00028162 0.45673 0.00021933 480.20901008163474 42.044 0.51979 39.325 39.035 39.555 -2.7191 36 14 3 0 0 0 0.70344 1 7880 7880 13.906 0.39817 1 3753200 5747 4127 3532 3536 6032 6032 -0.0776396164990274 DEFGNSKY 8 Unmodified _DEFGNSKY_ 0 0 0 ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENSG00000137947|ENST00000370500|GTF2B ENSG00000137947|ENST00000370500|GTF2B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.208889 958.403226 0.095929 4.6066E-05 0.25981 0.00012476 0.35574 0.00017083 480.2089780761535 39.218 0.78769 39.218 38.891 39.679 0 -0.046177 -0.00020996 NaN 13.906 39 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2625900 5748 4127 3532 3536 -0.0776396164990274 DEFGNSKY 8 Unmodified _DEFGNSKY_ 0 0 0 ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENSG00000137947|ENST00000370500|GTF2B ENSG00000137947|ENST00000370500|GTF2B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.208889 958.403226 -0.12972 -6.2291E-05 0.58645 0.00028162 0.45673 0.00021933 480.20901008163474 42.044 0.51979 39.325 39.035 39.555 -2.7191 0.060325 0.00010374 NaN 13.906 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3753200 5749 4127 3532 3536 -0.0776396164990274 DEFGNSKY 8 Unmodified _DEFGNSKY_ 0 0 0 ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENSG00000137947|ENST00000370500|GTF2B ENSG00000137947|ENST00000370500|GTF2B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.208889 958.403226 -0.044938 -2.1579E-05 0.53728 0.00025801 0.49234 0.00023643 480.2089633618452 41.937 0.67303 39.286 38.934 39.607 -2.651 0.021852 5.6519E-05 NaN 13.906 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3536300 5750 4127 3532 3536 -0.0776396164990274 DEFGNSKY 8 Unmodified _DEFGNSKY_ 0 0 0 ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENSG00000137947|ENST00000370500|GTF2B ENSG00000137947|ENST00000370500|GTF2B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.208889 958.403226 -0.014278 -6.8564E-06 0.58348 0.00028019 0.56921 0.00027334 480.2091047787512 41.834 1.3716 39.228 38.84 40.212 -2.606 -0.036 0.0001009 NaN 13.906 59 38 3 NaN NaN NaN NaN 0 NaN NaN 0 3106400 5751 4127 3532 3536 -0.0776396164990274 DEFHFVAD 8 Unmodified _DEFHFVAD_ 0 0 0 ENST00000479037.5_1_2:230672327-230744801:-|nuORF;TRIP12|p.N880Kfs*36|1|0.21|ENSG00000153827|chr2:229804013-229804014|-/T|frameshift_variant;TRIP12|p.S1195Lfs*24|6|0.27|ENSG00000153827|chr2:229796599-229796599|A/-|frameshift_variant;TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12 ENST00000479037.5_1_2:230672327-230744801:-|nuORF ENST00000479037.5_1_2:230672327-230744801:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2738037109375 2 490.211432 978.408311 0.60459 0.00029638 -1.6439 -0.00080588 -1.0393 -0.0005095 490.2105260993347 101.23 0.77771 101.23 100.66 101.43 0 38 21 2 0 0 0 0.08026 2 19874 19818;19874 74.423 30.016 1 2455700 5752 4981 3533 3537 6033;6034 6034 -0.08175657787285218 DEFHFVAD 8 Unmodified _DEFHFVAD_ 0 0 0 ENST00000479037.5_1_2:230672327-230744801:-|nuORF;TRIP12|p.N880Kfs*36|1|0.21|ENSG00000153827|chr2:229804013-229804014|-/T|frameshift_variant;TRIP12|p.S1195Lfs*24|6|0.27|ENSG00000153827|chr2:229796599-229796599|A/-|frameshift_variant;TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12 ENST00000479037.5_1_2:230672327-230744801:-|nuORF ENST00000479037.5_1_2:230672327-230744801:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25372314453125 2 490.211432 978.408311 -0.16909 -8.289E-05 -1.2659 -0.00062057 -1.435 -0.00070346 490.2108184611699 105.59 0.87985 101.32 100.71 101.59 -4.2638 43 24 2 0 0 0 0.23259 1 20769 20769 67.344 22.937 1 2510800 5753 4981 3533 3537 6035 6035 -0.08175657787285218 DEFHFVAD 8 Unmodified _DEFHFVAD_ 0 0 0 ENST00000479037.5_1_2:230672327-230744801:-|nuORF;TRIP12|p.N880Kfs*36|1|0.21|ENSG00000153827|chr2:229804013-229804014|-/T|frameshift_variant;TRIP12|p.S1195Lfs*24|6|0.27|ENSG00000153827|chr2:229796599-229796599|A/-|frameshift_variant;TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12 ENST00000479037.5_1_2:230672327-230744801:-|nuORF ENST00000479037.5_1_2:230672327-230744801:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25335693359375 2 490.211432 978.408311 0.18028 8.8375E-05 -1.3732 -0.00067315 -1.1929 -0.00058477 490.2104542005789 105.58 0.81059 101.21 100.73 101.54 -4.3764 47 22 3 0 0 0 0.12867 1 20268 20268 57.471 15.377 1 2822700 5754 4981 3533 3537 6036 6036 -0.08175657787285218 DEFHISVI 8 Unmodified _DEFHISVI_ 0 0 0 ENSG00000110721|ENST00000265689|CHKA;nc|ENSG00000110721|P35790-2|CHKA ENSG00000110721|ENST00000265689|CHKA ENSG00000110721|ENST00000265689|CHKA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2482604980469 2 480.245275 958.475997 -0.023156 -1.1121E-05 0.25704 0.00012344 0.23389 0.00011232 480.2453294577477 146.84 0.89896 146.84 146.47 147.37 0 60 25 3 0 0 0 0.18731 2 29392 29329;29392 46.921 7.4431 1 17029000 5755 2585 3534 3538 6037;6038 6038 -0.004902078564896328 DEFHISVI 8 Unmodified _DEFHISVI_ 0 0 0 ENSG00000110721|ENST00000265689|CHKA;nc|ENSG00000110721|P35790-2|CHKA ENSG00000110721|ENST00000265689|CHKA ENSG00000110721|ENST00000265689|CHKA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2480773925781 2 480.245275 958.475997 0.14584 7.0039E-05 -0.090713 -4.3565E-05 0.055126 2.6474E-05 480.2451729096314 151.62 1.0951 146.86 146.22 147.31 -4.7523 73 30 4 0 0 0 0.18731 1 30112 30112 46.921 12.818 1 22353000 5756 2585 3534 3538 6039 6039 -0.004902078564896328 DEFHISVI 8 Unmodified _DEFHISVI_ 0 0 0 ENSG00000110721|ENST00000265689|CHKA;nc|ENSG00000110721|P35790-2|CHKA ENSG00000110721|ENST00000265689|CHKA ENSG00000110721|ENST00000265689|CHKA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2483825683594 2 480.245275 958.475997 0.32714 0.00015711 -0.16105 -7.7344E-05 0.16609 7.9765E-05 480.24512758140986 152 0.95108 146.82 146.35 147.3 -5.1759 64 26 3 0 0 0 0.18731 2 29447 29447;29495 46.921 12.818 1 16181000 5757 2585 3534 3538 6040;6041 6040 -0.004902078564896328 DEFHISVI 8 Unmodified _DEFHISVI_ 0 0 0 ENSG00000110721|ENST00000265689|CHKA;nc|ENSG00000110721|P35790-2|CHKA ENSG00000110721|ENST00000265689|CHKA ENSG00000110721|ENST00000265689|CHKA MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.245275 958.475997 0.15736 7.5572E-05 0.034023 1.6339E-05 0.19138 9.1912E-05 480.2452140541328 152.2 0.858 146.96 146.46 147.32 -5.2365 0.090652 1.838E-05 NaN 46.921 59 23 3 NaN NaN NaN NaN 0 NaN NaN 0 21013000 5758 2585 3534 3538 -0.004902078564896328 DEFIGEKTF 9 Unmodified _DEFIGEKTF_ 0 0 0 nc|ENSG00000152348|Q9H0Y0-2|ATG10;ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant;ENSG00000152348|ENST00000282185|ATG10 nc|ENSG00000152348|Q9H0Y0-2|ATG10 nc|ENSG00000152348|Q9H0Y0-2|ATG10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7929077148438 2 543.261122 1084.50769 0.68295 0.00037102 -0.63619 -0.00034562 0.046763 2.5405E-05 543.2607416699881 103.74 0.80376 103.74 103.34 104.14 0 54 22 3 0 0 0 0.028327 2 20405 20336;20405 83.429 16.658 1 11575000 5759 247 3535 3539 6042;6043 6043 -0.03118259893199138 DEFIGEKTF 9 Unmodified _DEFIGEKTF_ 0 0 0 nc|ENSG00000152348|Q9H0Y0-2|ATG10;ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant;ENSG00000152348|ENST00000282185|ATG10 nc|ENSG00000152348|Q9H0Y0-2|ATG10 nc|ENSG00000152348|Q9H0Y0-2|ATG10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7822875976562 2 543.261122 1084.50769 -0.2792 -0.00015168 0.50141 0.0002724 0.22221 0.00012072 543.2612629490131 108.18 0.82782 103.86 103.42 104.24 -4.32 61 23 4 0 0 0 0.00017171 4 21315 21245;21268;21315;21335 121.53 86.239 1 13686000 5760 247 3535 3539 6044;6045;6046;6047 6046 -0.03118259893199138 DEFIGEKTF 9 Unmodified _DEFIGEKTF_ 0 0 0 nc|ENSG00000152348|Q9H0Y0-2|ATG10;ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant;ENSG00000152348|ENST00000282185|ATG10 nc|ENSG00000152348|Q9H0Y0-2|ATG10 nc|ENSG00000152348|Q9H0Y0-2|ATG10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7933349609375 2 543.261122 1084.50769 -0.08121 -4.4118E-05 0.22062 0.00011985 0.13941 7.5735E-05 543.2611698571591 108.26 0.82532 103.85 103.44 104.26 -4.4121 72 23 4 0 0 0 0.007198 2 20779 20734;20779 110.55 41.448 1 11890000 5761 247 3535 3539 6048;6049 6049 -0.03118259893199138 DEFIGEKTF 9 Unmodified _DEFIGEKTF_ 0 0 0 nc|ENSG00000152348|Q9H0Y0-2|ATG10;ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant;ENSG00000152348|ENST00000282185|ATG10 nc|ENSG00000152348|Q9H0Y0-2|ATG10 nc|ENSG00000152348|Q9H0Y0-2|ATG10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7964477539062 2 543.261122 1084.50769 0.77502 0.00042104 -0.52799 -0.00028684 0.24702 0.0001342 543.2607710144665 107.93 0.76958 103.8 103.46 104.23 -4.135 56 21 3 0 0 0 0.0048421 3 20768 20710;20768;20803 114.2 48.967 1 14356000 5762 247 3535 3539 6050;6051;6052 6051 -0.03118259893199138 DEFIGMIR 8 Unmodified _DEFIGMIR_ 0 0 0 tr|U7SWM2|U7SWM2_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01096PE=4SV=1 tr|U7SWM2|U7SWM2_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01096PE=4SV=1 tr|U7SWM2|U7SWM2_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01096PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27587890625 2 490.747127 979.479702 0.12047 5.9118E-05 -0.15938 -7.8215E-05 -0.038912 -1.9096E-05 490.7469609121732 136.59 0.70523 131.95 131.6 132.31 -4.6399 33 19 2 0 0 0 0.93477 1 26903 26903 24.674 11.166 1 5090800 5763 26250 3536 3540 6053 6053 -0.010858613542609419 DEFILPTGA 9 Unmodified _DEFILPTGA_ 0 0 0 nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23 nc|ENSG00000204152|Q5SRD1-2|TIMM23B nc|ENSG00000204152|Q5SRD1-2|TIMM23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78192138671875 2 481.745108 961.475663 0.0098788 4.759E-06 0.18356 8.843E-05 0.19344 9.3189E-05 481.7451446014277 138.81 0.91071 138.81 138.38 139.29 0 70 25 3 0 0 0 0.038675 2 27494 27494;27498 71.134 41.079 1 38361000 5764 6578 3537 3541 6054;6055 6054 -0.006616275763349222 DEFILPTGA 9 Unmodified _DEFILPTGA_ 0 0 0 nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23 nc|ENSG00000204152|Q5SRD1-2|TIMM23B nc|ENSG00000204152|Q5SRD1-2|TIMM23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7651672363281 2 481.745108 961.475663 0.10947 5.2738E-05 0.1067 5.1401E-05 0.21617 0.00010414 481.74506307770775 143.86 1.2226 139.21 138.61 139.83 -4.656 91 34 4 0 0 0 1.3328E-06 5 28413 28357;28413;28568;28571;28587 141.83 70.693 1 41683000 5765 6578 3537 3541 6056;6057;6058;6059;6060 6057 -0.006616275763349222 DEFILPTGA 9 Unmodified _DEFILPTGA_ 0 0 0 nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23 nc|ENSG00000204152|Q5SRD1-2|TIMM23B nc|ENSG00000204152|Q5SRD1-2|TIMM23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7718811035156 2 481.745108 961.475663 0.13721 6.6101E-05 0.082781 3.9879E-05 0.21999 0.00010598 481.74507761608584 144.25 1.213 139.18 138.63 139.84 -5.0671 93 34 4 0 0 0 4.1063E-11 5 27832 27723;27726;27826;27832;27910 156.16 74.292 1 33684000 5766 6578 3537 3541 6061;6062;6063;6064;6065 6064 -0.006616275763349222 DEFILPTGA 9 Unmodified _DEFILPTGA_ 0 0 0 nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23 nc|ENSG00000204152|Q5SRD1-2|TIMM23B nc|ENSG00000204152|Q5SRD1-2|TIMM23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 483.23797607421875 2 481.745108 961.475663 0.21849 0.00010526 0.024701 1.19E-05 0.24319 0.00011716 481.7450247842612 144.05 1.2947 139.11 138.53 139.83 -4.9445 95 36 4 0 0 0 0.066709 1 27791 27791 31.728 29.097 1 40310000 5767 6578 3537 3541 6066 6066 -0.006616275763349222 DEFKELVY 8 Unmodified _DEFKELVY_ 0 0 0 ENST00000478914.1_1_22:42052971-42057696:+|nuORF;nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6 ENST00000478914.1_1_22:42052971-42057696:+|nuORF ENST00000478914.1_1_22:42052971-42057696:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2596435546875 2 521.758215 1041.50188 0.19039 9.9336E-05 0.16048 8.373E-05 0.35086 0.00018307 521.7582152554231 113.08 0.88399 113.08 112.63 113.51 0 74 25 4 0 0 0 0.069961 3 22219 22176;22219;22263 69.105 17.475 1 9010300 5768 7264 3538 3542 6067;6068;6069 6068 -0.017213584048704433 DEFKELVY 8 Unmodified _DEFKELVY_ 0 0 0 ENST00000478914.1_1_22:42052971-42057696:+|nuORF;nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6 ENST00000478914.1_1_22:42052971-42057696:+|nuORF ENST00000478914.1_1_22:42052971-42057696:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2596435546875 2 521.758215 1041.50188 0.1946 0.00010153 0.23586 0.00012306 0.43046 0.0002246 522.2599860201552 116.45 0.83509 116.45 115.91 116.74 0 33 23 2 0 0 0 0.17453 2 22899 22899;22946 48.346 12.302 1 1555400 5769 7264 3538 3542 6070;6071 6070 -0.017213584048704433 DEFKELVY 8 Unmodified _DEFKELVY_ 0 0 0 ENST00000478914.1_1_22:42052971-42057696:+|nuORF;nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6 ENST00000478914.1_1_22:42052971-42057696:+|nuORF ENST00000478914.1_1_22:42052971-42057696:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2598876953125 2 521.758215 1041.50188 -0.035511 -1.8528E-05 0.55731 0.00029078 0.52179 0.00027225 521.7582933718613 117.77 0.74063 113.27 112.89 113.63 -4.502 61 20 4 0 0 0 0.069961 6 23209 23169;23209;23216;23242;23256;23257 69.105 25.75 1 10358000 5770 7264 3538 3542 6072;6073;6074;6075;6076;6077 6073 -0.017213584048704433 DEFKELVY 8 Unmodified _DEFKELVY_ 0 0 0 ENST00000478914.1_1_22:42052971-42057696:+|nuORF;nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6 ENST00000478914.1_1_22:42052971-42057696:+|nuORF ENST00000478914.1_1_22:42052971-42057696:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2589111328125 2 521.758215 1041.50188 -0.30123 -0.00015717 0.77363 0.00040365 0.4724 0.00024648 521.758449702962 117.8 0.87901 113.19 112.79 113.67 -4.6106 66 24 4 0 0 0 0.069961 7 22558 22547;22558;22579;22590;22593;22603;22656 69.105 31.267 1 9483600 5771 7264 3538 3542 6078;6079;6080;6081;6082;6083;6084 6079 -0.017213584048704433 DEFKELVY 8 Unmodified _DEFKELVY_ 0 0 0 ENST00000478914.1_1_22:42052971-42057696:+|nuORF;nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6 ENST00000478914.1_1_22:42052971-42057696:+|nuORF ENST00000478914.1_1_22:42052971-42057696:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2600708007812 2 521.758215 1041.50188 0.50123 0.00026152 -0.018322 -9.5599E-06 0.4829 0.00025196 521.7580624070749 117.61 0.89185 113.2 112.71 113.6 -4.4088 73 24 4 0 0 0 0.069961 5 22616 22571;22611;22616;22663;22689 69.105 25.75 1 7238700 5772 7264 3538 3542 6085;6086;6087;6088;6089 6087 -0.017213584048704433 DEFKSQIDV 9 Unmodified _DEFKSQIDV_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;UPF1|p.L1083I|1|0.39|ENSG00000005007|chr19:18865755-18865755|C/A|missense_variant;ENST00000600689.1_1_19:18976320-18976969:+|nuORF ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.266357421875 2 540.764029 1079.5135 0.41091 0.00022221 -1.381 -0.00074677 -0.97005 -0.00052457 541.2636532896079 84.259 1.2648 84.259 83.326 84.591 0 73 35 3 0 0 0 0.29284 2 16383 16383;16433 32.037 14.925 1 3708000 5773 980 3539 3543 6090;6091 6090 -0.023071613815318415 DEFKSQIDV 9 Unmodified _DEFKSQIDV_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;UPF1|p.L1083I|1|0.39|ENSG00000005007|chr19:18865755-18865755|C/A|missense_variant;ENST00000600689.1_1_19:18976320-18976969:+|nuORF ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2615966796875 2 540.764029 1079.5135 0.12467 6.7419E-05 -3.4583 -0.0018701 -3.3336 -0.0018027 540.7639987867514 88.113 1.0098 84.321 83.577 84.587 -3.7926 49 27 3 0 0 0 0.075017 2 17219 17177;17219 63.227 30.442 1 3934600 5774 980 3539 3543 6092;6093 6093 -0.023071613815318415 DEFKSVSKF 9 Unmodified _DEFKSVSKF_ 0 0 0 ENST00000475550.5_1_2:64069329-64114799:+|nuORF;UGP2|p.N469Mfs*4|1|0.39|ENSG00000169764|chr2:63890167-63890167|A/-|frameshift_variant;UGP2|p.N469Kfs*16|1|0.3|ENSG00000169764|chr2:63890166-63890167|-/A|frameshift_variant;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2 ENST00000475550.5_1_2:64069329-64114799:+|nuORF ENST00000475550.5_1_2:64069329-64114799:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7762451171875 2 543.776939 1085.53933 0.0011878 6.4589E-07 -1.7232 -0.00093704 -1.722 -0.0009364 543.7760461776153 68.173 0.89421 68.173 67.79 68.684 0 57 24 3 0 0 0 0.04524 1 13216 13216 73.196 29.338 1 4072400 5775 6006 3540 3544 6094 6094 -2.2671392343909247E-05 DEFKSVSKF 9 Unmodified _DEFKSVSKF_ 0 0 0 ENST00000475550.5_1_2:64069329-64114799:+|nuORF;UGP2|p.N469Mfs*4|1|0.39|ENSG00000169764|chr2:63890167-63890167|A/-|frameshift_variant;UGP2|p.N469Kfs*16|1|0.3|ENSG00000169764|chr2:63890166-63890167|-/A|frameshift_variant;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2 ENST00000475550.5_1_2:64069329-64114799:+|nuORF ENST00000475550.5_1_2:64069329-64114799:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.776611328125 2 543.776939 1085.53933 0.086393 4.6978E-05 -1.6176 -0.00087961 -1.5312 -0.00083263 543.7760948092308 71.45 0.77656 68.201 67.816 68.593 -3.2492 46 21 3 0 0 0 0.13904 2 13929 13925;13929 45.74 16.658 1 2543300 5776 6006 3540 3544 6095;6096 6096 -2.2671392343909247E-05 DEFLIFVP 8 Unmodified _DEFLIFVP_ 0 0 0 PADI1|p.T478I|1|0.2|ENSG00000142623|chr1:17237433-17237433|C/T|missense_variant PADI1|p.T478I|1|0.2|ENSG00000142623|chr1:17237433-17237433|C/T|missense_variant PADI1|p.T478I|1|0.2|ENSG00000142623|chr1:17237433-17237433|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2590637207031 2 490.260394 978.506234 NaN NaN NaN NaN NaN NaN NaN 153.5 1 148.23 147.73 148.73 -5.2669 0 0 0 0.21486 1 29753 29753 10.183 0.83596 1 5777 12748 3541 3545 6097 6097 0.016121508087167058 DEFNLKLT 8 Unmodified _DEFNLKLT_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25811767578125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 148 1 143.29 142.79 143.79 -4.7095 0 0 0 0.20033 1 29382 29382 13.615 10.028 1 5778 3655 3542 3546 6098 6098 0.012100613149868877 DEFPEVYRF 9 Unmodified _DEFPEVYRF_ 0 0 0 ENSG00000074935|ENST00000368662|TUBE1;ENST00000604689.1_1_6:112397497-112397677:-|nuORF;TUBE1|p.K249Sfs*10|2|0.19|ENSG00000074935|chr6:112076003-112076003|T/-|frameshift_variant ENSG00000074935|ENST00000368662|TUBE1 ENSG00000074935|ENST00000368662|TUBE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2825317382812 2 601.279846 1200.54514 0.39349 0.0002366 0.10207 6.1372E-05 0.49556 0.00029797 601.2798364221237 148.54 0.90634 148.54 148.09 148.99 0 74 25 4 0 0 0 0.058839 5 29719 29673;29719;29764;29813;29815 86.332 58.452 1 25345000 5779 1506 3543 3547 6099;6100;6101;6102;6103 6100 -0.04711168627591178 DEFPEVYRF 9 Unmodified _DEFPEVYRF_ 0 0 0 ENSG00000074935|ENST00000368662|TUBE1;ENST00000604689.1_1_6:112397497-112397677:-|nuORF;TUBE1|p.K249Sfs*10|2|0.19|ENSG00000074935|chr6:112076003-112076003|T/-|frameshift_variant ENSG00000074935|ENST00000368662|TUBE1 ENSG00000074935|ENST00000368662|TUBE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2828369140625 2 601.279846 1200.54514 1.1239 0.00067578 -0.73263 -0.00044052 0.39128 0.00023527 601.2793682591198 153.68 1.0645 148.91 148.4 149.47 -4.7684 97 29 4 0 0 0 0.01249 5 30559 30513;30557;30559;30603;30623 99.799 81.616 1 41192000 5780 1506 3543 3547 6104;6105;6106;6107;6108 6106 -0.04711168627591178 DEFPEVYRF 9 Unmodified _DEFPEVYRF_ 0 0 0 ENSG00000074935|ENST00000368662|TUBE1;ENST00000604689.1_1_6:112397497-112397677:-|nuORF;TUBE1|p.K249Sfs*10|2|0.19|ENSG00000074935|chr6:112076003-112076003|T/-|frameshift_variant ENSG00000074935|ENST00000368662|TUBE1 ENSG00000074935|ENST00000368662|TUBE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.282958984375 2 601.279846 1200.54514 0.50494 0.00030361 -0.058439 -3.5138E-05 0.44651 0.00026847 601.2797281868442 154.21 1.0438 148.94 148.37 149.41 -5.2669 94 29 4 0 0 0 0.023341 4 29883 29877;29883;29933;29939 88.954 58.452 1 27086000 5781 1506 3543 3547 6109;6110;6111;6112 6110 -0.04711168627591178 DEFPEVYRF 9 Unmodified _DEFPEVYRF_ 0 0 0 ENSG00000074935|ENST00000368662|TUBE1;ENST00000604689.1_1_6:112397497-112397677:-|nuORF;TUBE1|p.K249Sfs*10|2|0.19|ENSG00000074935|chr6:112076003-112076003|T/-|frameshift_variant ENSG00000074935|ENST00000368662|TUBE1 ENSG00000074935|ENST00000368662|TUBE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2835693359375 2 601.279846 1200.54514 0.46205 0.00027782 -0.015949 -9.59E-06 0.4461 0.00026823 601.2797165537797 154 1.0409 148.78 148.28 149.32 -5.2209 99 29 4 0 0 0 0.053942 3 29819 29819;29864;29912 69.105 43.706 1 26196000 5782 1506 3543 3547 6113;6114;6115 6113 -0.04711168627591178 DEFQRNCEY 9 Unmodified _DEFQRNCEY_ 0 0 0 REV__nc|ENSG00000100722|Q6PJT7-8|ZC3H14 REV__nc|ENSG00000100722|Q6PJT7-8|ZC3H14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.289306640625 2 602.240395 1202.46624 NaN NaN NaN NaN NaN NaN NaN 154.78 1 149.53 149.03 150.03 -5.2526 0 0 0 0.19632 1 30012 30012 0.40827 0.14288 1 + 5783 23971 3544 3548 6116 6116 -0.12689763924163344 DEFRMPYL 8 Oxidation (M) _DEFRM(Oxidation (M))PYL_ DEFRM(1)PYL DEFRM(59)PYL 0 0 1 ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 ENSG00000124214|ENST00000371856|STAU1 ENSG00000124214|ENST00000371856|STAU1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78173828125 2 543.749867 1085.48518 -0.28428 -0.00015458 0.37867 0.0002059 0.094392 5.1326E-05 543.749998150373 108.58 0.72848 104.26 103.87 104.59 -4.32 49 20 3 0 0 0 0.35245 1 21389 21389 58.679 26.562 1 4654600 5784 3302 3545 3549 6117 6117 51 -0.05414182562458336 DEFRMPYL 8 Oxidation (M) _DEFRM(Oxidation (M))PYL_ DEFRM(1)PYL DEFRM(56)PYL 0 0 1 ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 ENSG00000124214|ENST00000371856|STAU1 ENSG00000124214|ENST00000371856|STAU1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7825317382812 2 543.749867 1085.48518 -0.10715 -5.8265E-05 0.25215 0.00013711 0.145 7.8844E-05 543.7500042958743 108.67 0.61732 104.22 103.85 104.46 -4.4518 43 17 3 0 0 0 0.38349 1 20877 20877 56.177 40.33 1 2075000 5785 3302 3545 3549 6118 6118 51 -0.05414182562458336 DEFRMPYL 8 Oxidation (M) _DEFRM(Oxidation (M))PYL_ DEFRM(1)PYL DEFRM(96)PYL 0 0 1 ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 ENSG00000124214|ENST00000371856|STAU1 ENSG00000124214|ENST00000371856|STAU1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7820434570312 2 543.749867 1085.48518 0.76431 0.00041559 -0.89485 -0.00048657 -0.13054 -7.0979E-05 543.749476521622 108.35 0.69496 104.22 103.84 104.54 -4.135 56 19 4 0 0 0 0.12337 1 20848 20848 96.285 69.401 1 4814000 5786 3302 3545 3549 6119 6119 51 -0.05414182562458336 DEFRYRMY 8 Unmodified _DEFRYRMY_ 0 0 0 ENST00000496699.1_1_1:117509714-117517097:+|nuORF;ENSG00000134247|ENST00000393203|PTGFRN ENST00000496699.1_1_1:117509714-117517097:+|nuORF ENST00000496699.1_1_1:117509714-117517097:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2769775390625 2 590.266216 1178.51788 NaN NaN NaN NaN NaN NaN NaN 123.73 1 119 118.5 119.5 -4.731 0 0 0 0.21486 1 23765 23765 9.3474 3.6156 1 5787 3834 3546 3550 6120 6120 -0.0642397543961124 DEFSGSNQY 9 Unmodified _DEFSGSNQY_ 0 0 0 REV__ENST00000348513.10_1_17:38804216-38804279:-|nuORF REV__ENST00000348513.10_1_17:38804216-38804279:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6914672851562 2 523.706711 1045.39887 NaN NaN NaN NaN NaN NaN NaN 124.16 1 119.58 119.08 120.08 -4.5757 0 0 0 0.19684 1 24479 24479 0.40827 0 1 + 5788 20760 3547 3551 6121 6121 -0.12201470863465147 DEFTAQSI 8 Unmodified _DEFTAQSI_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000489375.5_1_19:40739781-40741265:-|nuORF;ENST00000496089.6_1_19:40739781-40742062:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 nc|ENSG00000105221|P31751-2|AKT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 910.414794921875 1 910.415253 909.407977 0.58153 0.00052943 -0.36559 -0.00033283 0.21594 0.0001966 910.4148941230732 84.844 0.52613 84.844 84.591 85.117 0 25 14 2 0 0 0 0.036491 1 16577 16577 100.37 52.026 1 2806400 5789 2287 3548 3552 6122 6122 -0.050350775071365206 DEFTAQSI 8 Unmodified _DEFTAQSI_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000489375.5_1_19:40739781-40741265:-|nuORF;ENST00000496089.6_1_19:40739781-40742062:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 nc|ENSG00000105221|P31751-2|AKT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.4138793945312 1 910.415253 909.407977 0.35604 0.00032414 -0.20913 -0.0001904 0.14691 0.00013374 910.414989038285 88.783 0.77338 85.033 84.777 85.55 -3.7501 35 21 2 0 0 0 0.036491 2 16969 16969;17048 100.37 52.026 1 5356700 5790 2287 3548 3552 6123;6124 6123 -0.050350775071365206 DEFTAQSI 8 Unmodified _DEFTAQSI_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000489375.5_1_19:40739781-40741265:-|nuORF;ENST00000496089.6_1_19:40739781-40742062:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 nc|ENSG00000105221|P31751-2|AKT2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 910.415253 909.407977 0.10945 9.9646E-05 -0.057367 -5.2228E-05 0.052084 4.7418E-05 910.4151616783905 88.818 0.63701 85.026 84.734 85.371 -3.7926 0.040489 0.00016052 NaN 100.37 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4151500 5791 2287 3548 3552 -0.050350775071365206 DEFTAQSI 8 Unmodified _DEFTAQSI_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000489375.5_1_19:40739781-40741265:-|nuORF;ENST00000496089.6_1_19:40739781-40742062:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 nc|ENSG00000105221|P31751-2|AKT2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 910.415253 909.407977 0.63059 0.0005741 -0.35614 -0.00032423 0.27445 0.00024987 910.4147823238645 89.083 0.6627 85.039 84.754 85.417 -4.0443 0.053597 -0.00011148 NaN 100.37 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 4506000 5792 2287 3548 3552 -0.050350775071365206 DEFTHDLFR 9 Unmodified _DEFTHDLFR_ 0 0 0 RYR3|p.R3733H|1|0.08|ENSG00000198838|chr15:33826705-33826705|G/A|missense_variant RYR3|p.R3733H|1|0.08|ENSG00000198838|chr15:33826705-33826705|G/A|missense_variant RYR3|p.R3733H|1|0.08|ENSG00000198838|chr15:33826705-33826705|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2745361328125 2 590.275095 1178.53564 NaN NaN NaN NaN NaN NaN NaN 141.46 1 141.46 140.96 141.96 0 0 0 0 0.23508 1 28186 28186 6.2058 0 1 5793 25632 3549 3553 6125 6125 -0.046489369130767955 DEFYQTTY 8 Unmodified _DEFYQTTY_ 0 0 0 ENST00000471423.1_1_1:151158258-151162597:-|nuORF;ENSG00000163159|ENST00000368892|VPS72;nc|ENSG00000163159|Q15906-2|VPS72 ENST00000471423.1_1_1:151158258-151162597:-|nuORF ENST00000471423.1_1_1:151158258-151162597:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2744140625 2 533.72183 1065.42911 0.029466 1.5727E-05 0.17568 9.3764E-05 0.20515 0.00010949 533.72191826449 87.636 1.1407 87.636 87.186 88.327 0 90 32 4 0 0 0 0.08026 2 17075 17060;17075 74.423 42.117 1 26410000 5794 5406 3550 3554 6126;6127 6127 -0.10099112198281546 DEFYQTTY 8 Unmodified _DEFYQTTY_ 0 0 0 ENST00000471423.1_1_1:151158258-151162597:-|nuORF;ENSG00000163159|ENST00000368892|VPS72;nc|ENSG00000163159|Q15906-2|VPS72 ENST00000471423.1_1_1:151158258-151162597:-|nuORF ENST00000471423.1_1_1:151158258-151162597:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2649536132812 2 533.72183 1065.42911 0.060607 3.2347E-05 0.25998 0.00013876 0.32059 0.0001711 533.7218848436671 92.193 1.036 88.268 87.791 88.827 -3.9251 89 29 5 0 0 0 0.14574 1 18082 18082 78.149 38.192 1 21390000 5795 5406 3550 3554 6128 6128 -0.10099112198281546 DEFYQTTY 8 Unmodified _DEFYQTTY_ 0 0 0 ENST00000471423.1_1_1:151158258-151162597:-|nuORF;ENSG00000163159|ENST00000368892|VPS72;nc|ENSG00000163159|Q15906-2|VPS72 ENST00000471423.1_1_1:151158258-151162597:-|nuORF ENST00000471423.1_1_1:151158258-151162597:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2806396484375 2 533.72183 1065.42911 0.62702 0.00033465 -0.29748 -0.00015877 0.32953 0.00017588 533.7215941760614 92.349 1.2196 88.255 87.668 88.888 -4.0946 92 34 4 0 0 0 0.27601 1 17635 17635 64.236 42.49 1 19407000 5796 5406 3550 3554 6129 6129 -0.10099112198281546 DEFYQTTY 8 Unmodified _DEFYQTTY_ 0 0 0 ENST00000471423.1_1_1:151158258-151162597:-|nuORF;ENSG00000163159|ENST00000368892|VPS72;nc|ENSG00000163159|Q15906-2|VPS72 ENST00000471423.1_1_1:151158258-151162597:-|nuORF ENST00000471423.1_1_1:151158258-151162597:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2630615234375 2 533.72183 1065.42911 0.16368 8.7358E-05 0.11504 6.1401E-05 0.27872 0.00014876 533.7218069216509 92.038 1.0987 88.23 87.754 88.853 -3.8083 91 31 4 0 0 0 0.38287 1 17669 17669 54.774 30.1 1 19742000 5797 5406 3550 3554 6130 6130 -0.10099112198281546 DEFYSDPH 8 Unmodified _DEFYSDPH_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ARHGAP17|p.P543Lfs*55|1|0.3|ENSG00000140750|chr16:24939460-24939460|G/-|frameshift_variant;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;ENST00000576387.1_1_16:24960717-24966004:-|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 505.7660217285156 2 505.198522 1008.38249 -0.18745 -9.4699E-05 0.31286 0.00015806 0.12541 6.3357E-05 505.1989284438945 44.43 0.48977 41.683 41.464 41.954 -2.7475 19 13 2 0 0 0 0.87562 1 8034 8034 18.373 12.181 1 721260 5798 4323 3551 3555 6131 6131 -0.12136552029573977 DEFYSDPH 8 Unmodified _DEFYSDPH_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ARHGAP17|p.P543Lfs*55|1|0.3|ENSG00000140750|chr16:24939460-24939460|G/-|frameshift_variant;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;ENST00000576387.1_1_16:24960717-24966004:-|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 505.198522 1008.38249 0.39121 0.00019764 -0.5308 -0.00026816 -0.13959 -7.0521E-05 505.1982202395774 41.452 0.45667 41.452 41.232 41.689 0 -0.11506 -0.00014813 NaN 18.373 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 734480 5799 4323 3551 3555 -0.12136552029573977 DEGEEEDDEYE 11 Unmodified _DEGEEEDDEYE_ 0 0 0 REV__ENSG00000177432|ENST00000323061|NAP1L5 REV__ENSG00000177432|ENST00000323061|NAP1L5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.74786376953125 3 453.484525 1357.43174 NaN NaN NaN NaN NaN NaN NaN 110.09 1 110.09 109.59 110.59 0 0 0 0 0.23698 1 21650 21650 0.40827 0.13925 1 + 5800 18557 3552 3556 6132 6132 -0.2326739811257994 DEGEWDEI 8 Unmodified _DEGEWDEI_ 0 0 0 REV__nc|ENSG00000136002|Q9NR80-4|ARHGEF4;REV__ENSG00000136002|ENST00000409359|ARHGEF4 REV__nc|ENSG00000136002|Q9NR80-4|ARHGEF4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 497.2252502441406 2 496.695812 991.377071 0.22925 0.00011387 -1.2778 -0.0006347 -1.0486 -0.00052083 496.69487507668475 161.7 0.42032 156.91 156.64 157.06 -4.7898 13 11 2 0 0 0 0.88445 1 32134 32134 1.7423 0 1 1018500 + 5801 24050;16306 3553 3557 6133 6133 -0.11896275612048157 DEGGGLGHGY 10 Unmodified _DEGGGLGHGY_ 0 0 0 REV__ENST00000574330.5_1_17:7076980-7077256:-|nuORF REV__ENST00000574330.5_1_17:7076980-7077256:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25164794921875 2 481.204138 960.393724 NaN NaN NaN NaN NaN NaN NaN 68.98 1 65.8 65.3 66.3 -3.1796 0 0 0 0.22588 1 13404 13404 11.64 2.2929 1 + 5802 16633 3554 3558 6134 6134 -0.0880572993540909 DEGGLKLTF 9 Unmodified _DEGGLKLTF_ 0 0 0 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2586669921875 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 134.51 1 134.51 134.01 135.01 0 0 0 0 0.18489 1 26628 26628 30.703 24.512 1 5803 522 3555 3559 6135 6135 0.012100613149982564 DEGGLKLTF 9 Unmodified _DEGGLKLTF_ 0 0 0 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2586669921875 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 134.52 1 134.52 134.02 135.02 0 0 0 0 0.024584 1 26629 26629 65.474 25.516 1 5804 522 3555 3559 6136 6136 0.012100613149982564 DEGGLKLTF 9 Unmodified _DEGGLKLTF_ 0 0 0 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2585754394531 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 134.73 1 134.73 134.23 135.23 0 0 0 0 0.18017 1 26674 26674 30.703 24.312 1 5805 522 3555 3559 6137 6137 0.012100613149982564 DEGGLKLTF 9 Unmodified _DEGGLKLTF_ 0 0 0 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25811767578125 2 490.258382 978.502212 0.14372 7.0461E-05 -0.22797 -0.00011177 -0.084253 -4.1306E-05 490.2581644266833 139.07 0.5648 134.43 134.16 134.72 -4.6439 21 15 2 0 0 0 0.028327 3 27467 27429;27467;27481 83.429 37.79 1 3233300 5806 522 3555 3559 6138;6139;6140 6139 0.012100613149982564 DEGGLKLTF 9 Unmodified _DEGGLKLTF_ 0 0 0 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25762939453125 2 490.258382 978.502212 0.17075 8.371E-05 0.2124 0.00010413 0.38315 0.00018784 490.25847061893325 139.37 0.6069 134.42 134.1 134.71 -4.952 27 16 2 0 0 0 0.031786 4 26784 26755;26780;26784;26828 79.596 34.438 1 1824000 5807 522 3555 3559 6141;6142;6143;6144 6143 0.012100613149982564 DEGGLKLTF 9 Unmodified _DEGGLKLTF_ 0 0 0 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25885009765625 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 139.69 1 134.73 134.23 135.23 -4.952 0 0 0 0.1888 1 26871 26871 19.626 16.039 1 5808 522 3555 3559 6145 6145 0.012100613149982564 DEGGLKLTF 9 Unmodified _DEGGLKLTF_ 0 0 0 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25885009765625 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 139.7 1 134.75 134.25 135.25 -4.952 0 0 0 0.038964 1 26874 26874 57.722 17.765 1 5809 522 3555 3559 6146 6146 0.012100613149982564 DEGGLKLTF 9 Unmodified _DEGGLKLTF_ 0 0 0 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2577819824219 2 490.258382 978.502212 0.014044 6.885E-06 0.55809 0.00027361 0.57214 0.0002805 490.25850145716583 139.38 0.5576 134.53 134.25 134.81 -4.8492 25 15 2 0 0 0 0.024872 3 26889 26842;26889;26923 87.258 38.103 1 1114200 5810 522 3555 3559 6147;6148;6149 6148 0.012100613149982564 DEGHQTLVF 9 Unmodified _DEGHQTLVF_ 0 0 0 ENSG00000186871|ENST00000334463|ERCC6L ENSG00000186871|ENST00000334463|ERCC6L ENSG00000186871|ENST00000334463|ERCC6L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6900024414062 2 523.251089 1044.48762 0.42268 0.00022117 0.10759 5.6299E-05 0.53028 0.00027747 523.2514088011258 99.267 0.79675 99.267 98.856 99.653 0 40 22 3 0 0 0 0.09885 1 19454 19454 56.177 18.026 1 3251000 5811 7080 3556 3560 6150 6150 -0.03284010833135653 DEGHQTLVF 9 Unmodified _DEGHQTLVF_ 0 0 0 ENSG00000186871|ENST00000334463|ERCC6L ENSG00000186871|ENST00000334463|ERCC6L ENSG00000186871|ENST00000334463|ERCC6L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.70068359375 2 523.251089 1044.48762 -0.29328 -0.00015346 1.2723 0.00066575 0.97904 0.00051229 523.2518073642154 103.41 0.77988 99.219 98.771 99.551 -4.1861 39 22 2 0 0 0 0.17935 2 20315 20261;20315 39.95 14.55 1 3235200 5812 7080 3556 3560 6151;6152 6152 -0.03284010833135653 DEGHQTLVF 9 Unmodified _DEGHQTLVF_ 0 0 0 ENSG00000186871|ENST00000334463|ERCC6L ENSG00000186871|ENST00000334463|ERCC6L ENSG00000186871|ENST00000334463|ERCC6L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6793212890625 2 523.251089 1044.48762 0.65384 0.00034212 0.45081 0.00023589 1.1047 0.00057801 523.2513946958438 103.28 0.82079 99.26 98.77 99.591 -4.0212 36 22 2 0 0 0 0.31673 1 19816 19816 47.749 13.646 1 3332200 5813 7080 3556 3560 6153 6153 -0.03284010833135653 DEGIKKLN 8 Unmodified _DEGIKKLN_ 0 0 0 REV__NOL8|p.N280Ifs*29|1|0.04|ENSG00000198000|chr9:92315786-92315786|T/-|frameshift_variant;REV__NOL8|p.D1050*|1|0.39|ENSG00000198000|chr9:92301578-92301579|-/A|frameshift_variant REV__NOL8|p.D1050*|1|0.39|ENSG00000198000|chr9:92301578-92301579|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2372741699219 2 458.758549 915.502546 -0.086155 -3.9524E-05 -0.31453 -0.00014429 -0.40068 -0.00018382 458.75846202287767 130.04 0.24753 125.4 125.3 125.54 -4.6359 9 6 2 0 0 0 0.86749 1 25651 25651 28.487 15.955 1 510340 + 5814 24373;19382 3557 3561 6154 6154 0.041414810348555875 DEGKLHVL 8 Unmodified _DEGKLHVL_ 0 0 0 NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant;ENSG00000136937|ENST00000375147|NCBP1 NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 305.1568298339844 3 304.17127 909.491981 -0.24742 -7.5258E-05 0.30376 9.2395E-05 0.056341 1.7137E-05 304.17130208172233 64.552 0.6993 61.554 61.219 61.919 -2.9975 61 19 4 0 0 0 8448 1 12464 12464 18.373 8.2992 1 13902000 5815 4055 3558 3562 6155 6155 0.03361498380422745 DEGKLHVL 8 Unmodified _DEGKLHVL_ 0 0 0 NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant;ENSG00000136937|ENST00000375147|NCBP1 NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 304.17127 909.491981 0.22236 6.7635E-05 -0.27436 -8.3452E-05 -0.051998 -1.5816E-05 304.17115782662324 65.049 0.66819 61.591 61.225 61.893 -3.4581 0.029933 -0.00036582 NaN 18.373 47 18 3 NaN NaN NaN NaN 0 NaN NaN 0 8727800 5816 4055 3558 3562 0.03361498380422745 DEGKLHVL 8 Unmodified _DEGKLHVL_ 0 0 0 NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant;ENSG00000136937|ENST00000375147|NCBP1 NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 304.17127 909.491981 -0.38673 -0.00011763 0.28355 8.6249E-05 -0.10318 -3.1385E-05 304.17130856879425 64.822 0.71983 61.539 61.174 61.894 -3.2832 -0.02261 0.00014329 NaN 18.373 49 20 3 NaN NaN NaN NaN 0 NaN NaN 0 9055700 5817 4055 3558 3562 0.03361498380422745 DEGKVIRF 8 Unmodified _DEGKVIRF_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7659606933594 2 482.266542 962.51853 -0.31102 -0.00014999 0.26365 0.00012715 -0.047368 -2.2844E-05 482.26663573987594 67.118 1.3353 67.118 66.627 67.963 0 73 37 2 0 0 0 0.091403 1 12977 12977 92.491 35.02 1 116750000 5818 1278 3559 3563 6156 6156 0.03577187271753246 DEGKVIRF 8 Unmodified _DEGKVIRF_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7654113769531 2 482.266542 962.51853 -0.053047 -2.5583E-05 0.04394 2.1191E-05 -0.0091067 -4.3919E-06 482.26653897230034 70.16 1.761 66.911 66.442 68.203 -3.2492 118 49 3 0 0 0 4.7765E-05 1 13655 13655 110.67 35.746 1 104310000 5819 1278 3559 3563 6157 6157 0.03577187271753246 DEGKVIRF 8 Unmodified _DEGKVIRF_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7782287597656 2 482.266542 962.51853 0.41231 0.00019884 -0.39476 -0.00019038 0.017554 8.4656E-06 482.2663184291392 70.508 1.8305 66.928 66.45 68.28 -3.5798 93 51 2 0 0 0 4.7765E-05 1 13295 13295 134.3 38.011 1 94076000 5820 1278 3559 3563 6158 6158 0.03577187271753246 DEGKVIRF 8 Unmodified _DEGKVIRF_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.266542 962.51853 0.2563 0.0001236 -0.21523 -0.0001038 0.041064 1.9804E-05 482.2664210547051 70.404 1.6917 66.937 66.394 68.086 -3.467 -0.036301 -0.00011622 NaN 110.67 87 47 2 NaN NaN NaN NaN 0 NaN NaN 0 95876000 5821 1278 3559 3563 0.03577187271753246 DEGLIIHVF 9 Unmodified _DEGLIIHVF_ 0 0 0 ENSG00000067606|ENST00000378567|PRKCZ;ENST00000479566.5_1_1:1986898-2002796:+|nuORF;PRKCZ|p.S262Afs*10|1|0.39|ENSG00000067606|chr1:2150886-2150886|A/-|frameshift_variant ENSG00000067606|ENST00000378567|PRKCZ ENSG00000067606|ENST00000378567|PRKCZ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2803344726562 2 521.782025 1041.5495 0.57106 0.00029797 -0.40254 -0.00021004 0.16853 8.7934E-05 521.7818302709978 168.71 0.17171 163.84 163.73 163.9 -4.873 10 4 3 0 0 0 5.8232E-11 2 33275 33257;33275 153.26 102.41 1 12014000 5822 1391 3560 3564 6159;6160 6160 0.030383405859993218 DEGLIIHVF 9 Unmodified _DEGLIIHVF_ 0 0 0 ENSG00000067606|ENST00000378567|PRKCZ;ENST00000479566.5_1_1:1986898-2002796:+|nuORF;PRKCZ|p.S262Afs*10|1|0.39|ENSG00000067606|chr1:2150886-2150886|A/-|frameshift_variant ENSG00000067606|ENST00000378567|PRKCZ ENSG00000067606|ENST00000378567|PRKCZ MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.782025 1041.5495 0.0017289 9.0211E-07 -0.38287 -0.00019977 -0.38114 -0.00019887 521.7817696834172 168.63 0.13565 163.84 163.73 163.86 -4.7898 0.021012 -0.00054044 NaN 153.26 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 19792000 5823 1391 3560 3564 0.030383405859993218 DEGLIIHVF 9 Unmodified _DEGLIIHVF_ 0 0 0 ENSG00000067606|ENST00000378567|PRKCZ;ENST00000479566.5_1_1:1986898-2002796:+|nuORF;PRKCZ|p.S262Afs*10|1|0.39|ENSG00000067606|chr1:2150886-2150886|A/-|frameshift_variant ENSG00000067606|ENST00000378567|PRKCZ ENSG00000067606|ENST00000378567|PRKCZ MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.782025 1041.5495 -0.53205 -0.00027762 0.75616 0.00039455 0.22411 0.00011694 521.7825064310958 168.7 0.20978 163.77 163.65 163.86 -4.9295 -0.043469 0.00064821 NaN 153.26 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 13252000 5824 1391 3560 3564 0.030383405859993218 DEGLKVRY 8 Unmodified _DEGLKVRY_ 0 0 0 ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant;ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant ALDH3A1|p.P445Rfs*6|4|0.31|ENSG00000108602|chr17:19738336-19738336|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25994873046875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 61.722 1 58.483 57.983 58.983 -3.2395 0 0 0 0.21323 1 11559 11559 14.582 0.67564 1 5825 121 3561 3565 6161 6161 0.023328834091330464 DEGLPAAPPI 10 Unmodified _DEGLPAAPPI_ 0 0 0 nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ARAP1|p.D335Efs*16|1|0.41|ENSG00000186635|chr11:72712213-72712213|G/-|frameshift_variant nc|ENSG00000186635|Q96P48-3|ARAP1 nc|ENSG00000186635|Q96P48-3|ARAP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25567626953125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 87.197 1 83.47 82.97 83.97 -3.727 0 0 0 0.22588 1 17047 17047 11.64 0.81637 1 5826 7070 3562 3566 6162 6162 0.012100613149868877 DEGPQCPGLTY 11 Unmodified _DEGPQCPGLTY_ 0 0 0 ENST00000503120.5_1_5:138724308-138724542:-|nuORF ENST00000503120.5_1_5:138724308-138724542:-|nuORF ENST00000503120.5_1_5:138724308-138724542:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2767333984375 2 590.252971 1178.49139 NaN NaN NaN NaN NaN NaN NaN 61.768 1 58.528 58.028 59.028 -3.2395 0 0 0 0.22943 1 11568 11568 8.7454 0.83525 1 5827 10642 3563 3567 6163 6163 -0.0907170912159927 DEGRREGP 8 Unmodified _DEGRREGP_ 0 0 0 REV__ENST00000545307.6_1_14:58666901-58669614:+|nuORF REV__ENST00000545307.6_1_14:58666901-58669614:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2373046875 2 458.21758 914.420607 NaN NaN NaN NaN NaN NaN NaN 51.762 1 48.717 48.217 49.217 -3.0453 0 0 0 0.21039 1 9511 9511 16.942 4.4107 1 + 5828 22887 3564 3568 6164 6164 -0.04002621324229949 DEGSQCWSGP 10 Unmodified _DEGSQCWSGP_ 0 0 0 ENST00000535516.5_1_13:111303118-111303271:-|nuORF ENST00000535516.5_1_13:111303118-111303271:-|nuORF ENST00000535516.5_1_13:111303118-111303271:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2852172851562 2 533.200738 1064.38692 NaN NaN NaN NaN NaN NaN NaN 54.074 1 50.939 50.439 51.439 -3.1352 0 0 0 0.22588 1 9965 9965 12.241 1.4167 1 5829 11017 3565 3569 6165 6165 -0.14269410878318922 DEGSQCWSGP 10 Unmodified _DEGSQCWSGP_ 0 0 0 ENST00000535516.5_1_13:111303118-111303271:-|nuORF ENST00000535516.5_1_13:111303118-111303271:-|nuORF ENST00000535516.5_1_13:111303118-111303271:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2683715820312 2 533.200738 1064.38692 NaN NaN NaN NaN NaN NaN NaN 54.123 1 50.987 50.487 51.487 -3.1352 0 0 0 0.22535 1 9975 9975 20.415 1.0526 1 5830 11017 3565 3569 6166 6166 -0.14269410878318922 DEGTCCSH 8 Unmodified _DEGTCCSH_ 0 0 0 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.2129821777344 2 426.136553 850.258552 NaN NaN NaN NaN NaN NaN NaN 94.502 1 90.311 89.811 90.811 -4.1911 0 0 0 0.23749 1 18027 18027 0.0082765 0 1 5831 7508 3566 3570 6167 6167 -0.17256669393043467 DEGVGLVH 8 Unmodified _DEGVGLVH_ 0 0 0 ENSG00000112972|ENST00000325110|HMGCS1 ENSG00000112972|ENST00000325110|HMGCS1 ENSG00000112972|ENST00000325110|HMGCS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 413.17449951171875 2 413.208692 824.402832 NaN NaN NaN NaN NaN NaN NaN 48.776 1 45.769 45.269 46.269 -3.0068 0 0 0 0.21486 1 8931 8931 10.183 0.83596 1 5832 2720 3567 3571 6168 6168 -0.016393365790918324 DEGYVYGLK 9 Unmodified _DEGYVYGLK_ 0 0 0 ENSG00000151151|ENST00000373935|IPMK ENSG00000151151|ENST00000373935|IPMK ENSG00000151151|ENST00000373935|IPMK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2566528320312 2 522.25584 1042.49713 -0.20271 -0.00010587 -0.89899 -0.00046951 -1.1017 -0.00057537 522.2553937822646 78.617 0.17739 75.154 75.076 75.253 -3.4633 7 4 2 0 0 0 0.62102 1 15364 15364 11.64 0 1 1023500 5833 4851 3568 3572 6169 6169 -0.022422425476406715 DEHAGVISV 9 Unmodified _DEHAGVISV_ 0 0 0 ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5 ENST00000531779.1_1_1:110946539-110950281:-|nuORF ENST00000531779.1_1_1:110946539-110950281:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2369079589844 2 463.732532 925.45051 -0.058894 -2.7311E-05 -0.078461 -3.6385E-05 -0.13735 -6.3696E-05 463.7324459236622 70.142 0.95404 70.142 69.672 70.626 0 79 26 4 0 0 0 0.19311 2 13545 13545;13595 37.974 14.826 1 45514000 5834 3835 3569 3573 6170;6171 6170 -0.015196823788869551 DEHAGVISV 9 Unmodified _DEHAGVISV_ 0 0 0 ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5 ENST00000531779.1_1_1:110946539-110950281:-|nuORF ENST00000531779.1_1_1:110946539-110950281:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2366638183594 2 463.732532 925.45051 -0.17516 -8.1227E-05 0.11375 5.2748E-05 -0.061412 -2.8479E-05 463.7325461896568 73.213 1.0348 69.903 69.455 70.489 -3.3107 81 28 4 0 0 0 0.057505 2 14282 14241;14282 68.081 30.107 1 56845000 5835 3835 3569 3573 6172;6173 6173 -0.015196823788869551 DEHAGVISV 9 Unmodified _DEHAGVISV_ 0 0 0 ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5 ENST00000531779.1_1_1:110946539-110950281:-|nuORF ENST00000531779.1_1_1:110946539-110950281:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2373352050781 2 463.732532 925.45051 0.17969 8.3329E-05 -0.26835 -0.00012444 -0.088661 -4.1115E-05 463.73236045764367 73.517 0.97563 69.841 69.474 70.45 -3.6764 86 27 5 0 0 0 0.19311 2 13878 13878;13925 37.974 14.826 1 46110000 5836 3835 3569 3573 6174;6175 6174 -0.015196823788869551 DEHAGVISV 9 Unmodified _DEHAGVISV_ 0 0 0 ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5 ENST00000531779.1_1_1:110946539-110950281:-|nuORF ENST00000531779.1_1_1:110946539-110950281:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.236328125 2 463.732532 925.45051 0.373 0.00017297 -0.52978 -0.00024568 -0.15678 -7.2703E-05 463.73223524696203 73.589 1.1186 69.995 69.489 70.607 -3.594 95 31 4 0 0 0 0.13708 2 13985 13941;13985 46.021 11.919 1 53269000 5837 3835 3569 3573 6176;6177 6177 -0.015196823788869551 DEHCWLPG 8 Unmodified _DEHCWLPG_ 0 0 0 REV__ENSG00000073910|ENST00000542859|FRY REV__ENSG00000073910|ENST00000542859|FRY MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7379455566406 2 478.700177 955.385802 NaN NaN NaN NaN NaN NaN NaN 39.937 1 37.447 36.947 37.947 -2.4896 0 0 0 0.21486 1 7135 7135 10.183 2.2732 1 + 5838 14307 3570 3574 6178 6178 -0.09367580456535052 DEHDCEPSDP 10 Unmodified _DEHDCEPSDP_ 0 0 0 ENST00000461845.1_1_2:85822886-85823939:+|nuORF;ENSG00000168894|ENST00000306368|RNF181 ENST00000461845.1_1_2:85822886-85823939:+|nuORF ENST00000461845.1_1_2:85822886-85823939:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2102355957031 3 381.801354 1142.38223 -0.11471 -4.3796E-05 0.84608 0.00032303 0.73137 0.00027924 381.80163231380203 22.719 0.39062 22.719 22.536 22.927 0 19 10 2 0 0 0 0.91149 1 3852 3852 1.7423 0 1 1043400 5839 5945 3571 3575 6179 6179 -0.18326339811710568 DEHEDQFRQ 9 Unmodified _DEHEDQFRQ_ 0 0 0 REV__ENST00000601803.5_1_19:19032987-19035509:+|nuORF REV__ENST00000601803.5_1_19:19032987-19035509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2871704101562 2 602.254891 1202.49523 NaN NaN NaN NaN NaN NaN NaN 73.112 1 69.801 69.301 70.301 -3.3107 0 0 0 0.19512 1 14254 14254 14.957 6.2054 1 + 5840 13656 3572 3576 6180 6180 -0.09791903303516847 DEHGHLAAL 9 Unmodified _DEHGHLAAL_ 0 0 0 REV__ENSG00000198944|ENST00000378693|SOWAHA REV__ENSG00000198944|ENST00000378693|SOWAHA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2374572753906 2 481.738148 961.461744 0.81364 0.00039196 -0.63907 -0.00030786 0.17457 8.4097E-05 481.73774705811053 28.502 0.54984 26.546 26.26 26.81 -1.9561 35 15 3 0 0 0 0.65155 1 5091 5091 28.487 12.64 1 5397900 + 5841 19487 3573 3577 6181 6181 -0.020528602847662114 DEHGIDPTGTY 11 Unmodified _DEHGIDPTGTY_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2841796875 2 602.759475 1203.5044 0.087682 5.2851E-05 -0.45907 -0.00027671 -0.37139 -0.00022386 602.7596081185102 59.364 0.81491 59.364 58.969 59.784 0 79 22 6 0 0 0 1.4743E-14 1 11360 11360 149.91 123.65 1 23378000 5842 2259 3574 3578 6182 6182 -0.08921554737844417 DEHGIDPTGTY 11 Unmodified _DEHGIDPTGTY_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2754516601562 2 602.759475 1203.5044 1.0743 0.00064753 -1.5283 -0.00092121 -0.45403 -0.00027367 602.7590429188683 62.604 0.93597 59.643 59.252 60.188 -2.9614 95 26 5 0 0 0 0.0046091 1 12102 12102 96.367 79.801 1 21366000 5843 2259 3574 3578 6183 6183 -0.08921554737844417 DEHGIDPTGTY 11 Unmodified _DEHGIDPTGTY_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2728881835938 2 602.759475 1203.5044 0.50072 0.00030181 -1.1118 -0.00067014 -0.61106 -0.00036832 602.7594088071448 63.044 0.85123 59.628 59.228 60.079 -3.4158 87 23 6 0 0 0 0.07652 1 11774 11774 79.596 65.981 1 15405000 5844 2259 3574 3578 6184 6184 -0.08921554737844417 DEHGIDPTGTY 11 Unmodified _DEHGIDPTGTY_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2832641601562 2 602.759475 1203.5044 0.31988 0.00019281 -0.92575 -0.000558 -0.60587 -0.00036519 602.759490741956 62.876 0.8625 59.619 59.226 60.089 -3.2567 93 24 6 0 0 0 0.011972 2 11864 11812;11864 118.07 86.8 1 19120000 5845 2259 3574 3578 6185;6186 6186 -0.08921554737844417 DEHGTEEF 8 Unmodified _DEHGTEEF_ 0 0 0 REV__ENSG00000138078|ENST00000409411|PREPL REV__ENSG00000138078|ENST00000409411|PREPL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.768310546875 2 482.188154 962.361755 NaN NaN NaN NaN NaN NaN NaN 139.74 1 139.74 139.24 140.24 0 0 0 0 0.21486 1 27791 27791 5.7604 0.52976 1 + 5846 16433 3575 3579 6187 6187 -0.12093142409219126 DEHHFVAV 8 Unmodified _DEHHFVAV_ 0 0 0 ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72161865234375 2 477.227417 952.44028 -0.2079 -9.9217E-05 0.040879 1.9508E-05 -0.16702 -7.9709E-05 477.2274029883342 55.214 1.3086 55.214 54.595 55.904 0 114 36 4 0 0 0 0.27274 4 10501 10501;10515;10560;10608 38.151 28.077 1 89227000 5847 4787 3576 3580 6188;6189;6190;6191 6188 -0.03784245313477186 DEHHFVAV 8 Unmodified _DEHHFVAV_ 0 0 0 ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73199462890625 2 477.227417 952.44028 -0.10533 -5.0268E-05 0.12157 5.8016E-05 0.016235 7.748E-06 477.2274614689148 57.876 1.3936 54.966 54.254 55.648 -2.9105 138 39 5 0 0 0 0.31517 2 11108 11108;11158 36.044 11.508 1 81123000 5848 4787 3576 3580 6192;6193 6192 -0.03784245313477186 DEHHFVAV 8 Unmodified _DEHHFVAV_ 0 0 0 ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7314147949219 2 477.227417 952.44028 0.057244 2.7318E-05 -0.0047104 -2.2479E-06 0.052533 2.507E-05 477.22738914241535 58.186 1.8394 54.934 54.147 55.986 -3.2517 142 51 4 0 0 0 0.45067 3 10851 10719;10805;10851 30.225 13.283 1 65122000 5849 4787 3576 3580 6194;6195;6196 6196 -0.03784245313477186 DEHHFVAV 8 Unmodified _DEHHFVAV_ 0 0 0 ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7315368652344 2 477.227417 952.44028 0.090516 4.3197E-05 -0.048746 -2.3263E-05 0.04177 1.9934E-05 477.227366506816 58.238 1.7775 55.033 54.253 56.03 -3.2052 161 50 5 0 0 0 0.31517 4 10827 10778;10827;10875;10921 36.044 15.859 1 70586000 5850 4787 3576 3580 6197;6198;6199;6200 6198 -0.03784245313477186 DEHNSLAQILH 11 Unmodified _DEHNSLAQILH_ 0 0 0 REV__ENSG00000136463|ENST00000258975|TACO1 REV__ENSG00000136463|ENST00000258975|TACO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.2906799316406 3 426.214198 1275.62076 -0.055708 -2.3744E-05 -0.30647 -0.00013062 -0.36218 -0.00015437 426.2141055156163 45.207 0.42929 42.342 42.09 42.52 -2.8653 25 11 3 0 0 0 0.96192 1 8178 8178 0.45452 0.29519 1 1609800 + 5851 16332 3577 3581 6201 6201 -0.006021914472739809 DEHNSLAQILH 11 Unmodified _DEHNSLAQILH_ 0 0 0 REV__ENSG00000136463|ENST00000258975|TACO1 REV__ENSG00000136463|ENST00000258975|TACO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 426.214198 1275.62076 0.31995 0.00013637 -1.1719 -0.0004995 -0.85199 -0.00036313 426.2135188745345 42.177 0.5259 42.177 41.861 42.387 0 -0.11304 -0.00090845 NaN 0.45452 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1110400 + 5852 16332 3577 3581 -0.006021914472739809 DEHNSLAQILH 11 Unmodified _DEHNSLAQILH_ 0 0 0 REV__ENSG00000136463|ENST00000258975|TACO1 REV__ENSG00000136463|ENST00000258975|TACO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 426.214198 1275.62076 -0.16314 -6.9531E-05 -0.58339 -0.00024865 -0.74653 -0.00031818 426.2137826768782 45.081 0.84857 42.291 41.677 42.526 -2.79 0.00080043 -0.00015591 NaN 0.45452 37 23 3 NaN NaN NaN NaN 0 NaN NaN 0 2098200 + 5853 16332 3577 3581 -0.006021914472739809 DEHPNVIRY 9 Unmodified _DEHPNVIRY_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ERN1|p.C630Y|1|0.19|ENSG00000178607|chr17:64054314-64054314|C/T|missense_variant;ENST00000583077.1_1_17:62131582-62132105:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2186279296875 3 381.524484 1141.55162 -0.39675 -0.00015137 0.34604 0.00013202 -0.050711 -1.9348E-05 381.5245768068307 55.748 1.2045 52.864 52.491 53.695 -2.8837 114 34 4 0 0 0 0.033674 1 10663 10663 78.06 49.566 1 69211000 5854 6585 3578 3582 6202 6202 -0.013492306761918371 DEHPNVIRY 9 Unmodified _DEHPNVIRY_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ERN1|p.C630Y|1|0.19|ENSG00000178607|chr17:64054314-64054314|C/T|missense_variant;ENST00000583077.1_1_17:62131582-62132105:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.20477294921875 3 381.524484 1141.55162 0.065744 2.5083E-05 -0.15182 -5.7924E-05 -0.086077 -3.284E-05 381.52439305380557 56.001 1.2301 52.811 52.529 53.759 -3.1895 113 34 4 0 0 0 0.080883 1 10529 10529 61.602 48.729 1 53106000 5855 6585 3578 3582 6203 6203 -0.013492306761918371 DEHPNVIRY 9 Unmodified _DEHPNVIRY_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ERN1|p.C630Y|1|0.19|ENSG00000178607|chr17:64054314-64054314|C/T|missense_variant;ENST00000583077.1_1_17:62131582-62132105:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2056579589844 3 381.524484 1141.55162 -0.66024 -0.0002519 0.58824 0.00022443 -0.071996 -2.7468E-05 381.5246737130719 55.998 1.2688 52.822 52.518 53.787 -3.1761 119 35 4 0 0 0 0.22356 1 10573 10573 57.249 44.377 1 49972000 5856 6585 3578 3582 6204 6204 -0.013492306761918371 DEHPNVIRY 9 Unmodified _DEHPNVIRY_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ERN1|p.C630Y|1|0.19|ENSG00000178607|chr17:64054314-64054314|C/T|missense_variant;ENST00000583077.1_1_17:62131582-62132105:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 381.524484 1141.55162 -0.096063 -3.6651E-05 0.037169 1.4181E-05 -0.058895 -2.247E-05 381.52446162635346 52.79 1.2423 52.79 52.501 53.744 0 -0.031688 -0.00017349 NaN 78.06 103 34 4 NaN NaN NaN NaN 0 NaN NaN 0 59980000 5857 6585 3578 3582 -0.013492306761918371 DEHQRPRKL 9 Unmodified _DEHQRPRKL_ 0 0 0 nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;nc|ENSG00000205726|Q15811-5|ITSN1;ITSN1|p.P1076Tfs*2|1|0.25|ENSG00000205726|chr21:33826852-33826853|-/A|frameshift_variant;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1 nc|ENSG00000205726|Q15811-4|ITSN1 nc|ENSG00000205726|Q15811-4|ITSN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2547607421875 2 589.823078 1177.6316 NaN NaN NaN NaN NaN NaN NaN 62.407 1 62.407 61.907 62.907 0 0 0 0 0.19627 1 11984 11984 0.0033805 0 1 + 5858 7655 3579 3583 6205 6205 0.049892557176463015 DEHSPFEF 8 Unmodified _DEHSPFEF_ 0 0 0 ENSG00000132464|ENST00000396073|ENAM;ENAM|p.D1114Y|1|0.2|ENSG00000132464|chr4:70644766-70644766|G/T|missense_variant ENSG00000132464|ENST00000396073|ENAM ENSG00000132464|ENST00000396073|ENAM MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.4798889160156 3 336.475018 1006.40323 NaN NaN NaN NaN NaN NaN NaN 54.868 1 51.731 51.231 52.231 -3.1377 0 0 0 0.22674 1 10168 10168 14.838 4.7643 1 5859 3729 3580 3584 6206 6206 -0.0997196164989873 DEHTLVTT 8 Unmodified _DEHTLVTT_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2246398925781 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 38.165 1 38.165 37.665 38.665 0 0 0 0 0.20462 1 7072 7072 21.747 3.6117 1 5860 1446 3581 3585 6207 6207 -0.026113886158100286 DEHTLVTT 8 Unmodified _DEHTLVTT_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2245788574219 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 40.545 1 37.91 37.41 38.41 -2.6348 0 0 0 0.10184 1 7556 7556 44.407 20.386 1 5861 1446 3581 3585 6208 6208 -0.026113886158100286 DEHTLVTT 8 Unmodified _DEHTLVTT_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2246398925781 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 40.494 1 37.954 37.454 38.454 -2.5398 0 0 0 0.11793 1 7259 7259 42.095 13.608 1 5862 1446 3581 3585 6209 6209 -0.026113886158100286 DEHTLVTT 8 Unmodified _DEHTLVTT_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22418212890625 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 40.426 1 37.936 37.436 38.436 -2.4896 0 0 0 0.11793 1 7235 7235 42.095 18.946 1 5863 1446 3581 3585 6210 6210 -0.026113886158100286 DEHTRVLQP 9 Unmodified _DEHTRVLQP_ 0 0 0 REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7821044921875 2 547.783087 1093.55162 0.35199 0.00019282 -3.0105 -0.0016491 -2.6585 -0.0014563 548.2842220239991 158.19 0.21544 153.39 153.22 153.44 -4.7952 6 5 2 0 0 0 0.6329 1 31426 31426 10.824 0 1 772600 + 5864 14238 3582 3586 6211 6211 0.008587693238041538 DEIDFIEKKY 10 Unmodified _DEIDFIEKKY_ 0 0 0 tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1 tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1 tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.8889465332031 3 433.887088 1298.63943 NaN NaN NaN NaN NaN NaN NaN 37.808 1 35.34 34.84 35.84 -2.4688 0 0 0 0.22588 1 6992 6992 3.5871 0.95582 1 5865 26153 3583 3587 6212 6212 0.002059254039068037 DEIDFKETGF 10 Unmodified _DEIDFKETGF_ 0 0 0 nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2786865234375 2 600.774593 1199.53463 0.38045 0.00022856 -0.31173 -0.00018728 0.068715 4.1282E-05 600.7743451508809 120.04 0.8429 120.04 119.58 120.43 0 74 23 4 0 0 0 0.096197 2 23649 23649;23693 61.602 20.357 1 28957000 5866 2560 3584 3588 6213;6214 6213 -0.05715196072674189 DEIDFKETGF 10 Unmodified _DEIDFKETGF_ 0 0 0 nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2786865234375 2 600.774593 1199.53463 1.119 0.00067229 -1.0127 -0.00060843 0.10629 6.3859E-05 600.7739012563736 124.67 1.0103 120.07 119.67 120.68 -4.5984 92 28 4 0 0 0 0.18128 4 24554 24554;24571;24603;24649 45.74 23.082 1 54127000 5867 2560 3584 3588 6215;6216;6217;6218 6215 -0.05715196072674189 DEIDFKETGF 10 Unmodified _DEIDFKETGF_ 0 0 0 nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.297607421875 2 600.774593 1199.53463 0.71977 0.00043242 -0.68304 -0.00041035 0.036731 2.2067E-05 600.77413279476 124.87 1.0234 120.11 119.63 120.65 -4.7681 92 28 4 0 0 0 0.12513 1 23972 23972 53.404 24.909 1 53029000 5868 2560 3584 3588 6219 6219 -0.05715196072674189 DEIDFKETGF 10 Unmodified _DEIDFKETGF_ 0 0 0 nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2779541015625 2 600.774593 1199.53463 0.30899 0.00018563 -0.18791 -0.00011289 0.12108 7.2742E-05 600.7744530713409 124.78 1.2138 120.13 119.6 120.81 -4.6495 103 33 4 0 0 0 0.15447 1 23966 23966 47.594 12.662 1 36862000 5869 2560 3584 3588 6220 6220 -0.05715196072674189 DEIEDLTCEH 10 Unmodified _DEIEDLTCEH_ 0 0 0 RIPPLY2|p.N128H|1|0.42|ENSG00000203877|chr6:83857384-83857384|A/C|missense_variant RIPPLY2|p.N128H|1|0.42|ENSG00000203877|chr6:83857384-83857384|A/C|missense_variant RIPPLY2|p.N128H|1|0.42|ENSG00000203877|chr6:83857384-83857384|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2786865234375 2 602.245343 1202.47613 NaN NaN NaN NaN NaN NaN NaN 51.78 1 48.898 48.398 49.398 -2.8824 0 0 0 2.8426 1 9842 9842 0.26539 0 1 5870 25612 3585 3589 6221 6221 -0.11700620709461873 DEIEMKVV 8 Unmodified _DEIEMKVV_ 0 0 0 nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000591502.1_1_19:33481365-33482797:-|nuORF;ENST00000592247.1_1_19:33470904-33481620:-|nuORF;nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2 nc|ENSG00000258628|A8MT19|RHPN2P1 nc|ENSG00000258628|A8MT19|RHPN2P1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7655334472656 2 481.746793 961.479033 NaN NaN NaN NaN NaN NaN NaN 94.814 1 90.765 90.265 91.265 -4.0496 0 0 0 0.13285 1 18582 18582 39.95 14.55 1 5871 12635 3586 3590 6222 6222 -0.003247007939648938 DEIEMKVV 8 Unmodified _DEIEMKVV_ 0 0 0 nc|ENSG00000258628|A8MT19|RHPN2P1;ENST00000591502.1_1_19:33481365-33482797:-|nuORF;ENST00000592247.1_1_19:33470904-33481620:-|nuORF;nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2 nc|ENSG00000258628|A8MT19|RHPN2P1 nc|ENSG00000258628|A8MT19|RHPN2P1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77838134765625 2 481.746793 961.479033 NaN NaN NaN NaN NaN NaN NaN 94.81 1 90.929 90.429 91.429 -3.881 0 0 0 0.027494 1 18192 18192 60.074 16.216 1 5872 12635 3586 3590 6223 6223 -0.003247007939648938 DEIENSIV 8 Unmodified _DEIENSIV_ 0 0 0 ENSG00000108651|ENST00000261708|UTP6;ENST00000579878.1_1_17:30219240-30228646:-|nuORF;ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000560291.2_1_15:52152484-52153489:-|nuORF;ENST00000583408.5_1_17:30207568-30228646:-|nuORF ENSG00000108651|ENST00000261708|UTP6 ENSG00000108651|ENST00000261708|UTP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2336120605469 2 459.724372 917.434192 0.25235 0.00011601 0.031036 1.4268E-05 0.28339 0.00013028 459.7243441341287 85.27 0.73872 85.27 85.049 85.788 0 33 20 2 0 0 0 8448 1 16659 16659 33.593 9.8712 1 2453200 5873 2491 3587 3591 6224 6224 -0.02782808335655318 DEIENSIV 8 Unmodified _DEIENSIV_ 0 0 0 ENSG00000108651|ENST00000261708|UTP6;ENST00000579878.1_1_17:30219240-30228646:-|nuORF;ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000560291.2_1_15:52152484-52153489:-|nuORF;ENST00000583408.5_1_17:30207568-30228646:-|nuORF ENSG00000108651|ENST00000261708|UTP6 ENSG00000108651|ENST00000261708|UTP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22735595703125 2 459.724372 917.434192 -0.17742 -8.1566E-05 0.38681 0.00017783 0.20939 9.6261E-05 459.7244556018496 89.158 0.66249 85.366 85.057 85.719 -3.7926 30 18 2 0 0 0 0.68128 1 17401 17401 16.942 4.4107 1 1719300 5874 2491 3587 3591 6225 6225 -0.02782808335655318 DEIENSIV 8 Unmodified _DEIENSIV_ 0 0 0 ENSG00000108651|ENST00000261708|UTP6;ENST00000579878.1_1_17:30219240-30228646:-|nuORF;ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000560291.2_1_15:52152484-52153489:-|nuORF;ENST00000583408.5_1_17:30207568-30228646:-|nuORF ENSG00000108651|ENST00000261708|UTP6 ENSG00000108651|ENST00000261708|UTP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.22674560546875 2 459.724372 917.434192 0.1973 9.0703E-05 0.17587 8.0854E-05 0.37317 0.00017156 459.72442885424726 89.212 0.91032 85.46 85.094 86.004 -3.7516 32 25 2 0 0 0 0.52597 1 17060 17060 26.884 5.137 1 1444000 5875 2491 3587 3591 6226 6226 -0.02782808335655318 DEIEPAAM 8 Unmodified _DEIEPAAM_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 439.2073974609375 2 438.194393 874.374234 -0.26066 -0.00011422 0.22523 9.8694E-05 -0.035433 -1.5527E-05 438.19450125627395 71.363 1.2019 68.114 67.53 68.732 -3.2492 79 33 3 0 0 0 8448 1 13870 13870 45.004 38.612 1 8061000 5876 2821 3588 3592 6227 6227 -0.06797822270550569 DEIEPAAM 8 Unmodified _DEIEPAAM_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 438.194393 874.374234 -0.16279 -7.1332E-05 -0.089363 -3.9158E-05 -0.25215 -0.00011049 438.1944007491178 67.973 1.455 67.973 67.368 68.823 0 -0.094863 0.00010287 NaN 45.004 81 40 3 NaN NaN NaN NaN 0 NaN NaN 0 3885400 5877 2821 3588 3592 -0.06797822270550569 DEIEPAAM 8 Unmodified _DEIEPAAM_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 438.194393 874.374234 0.27224 0.00011929 -0.40023 -0.00017538 -0.128 -5.6088E-05 438.19426587281475 71.731 1.1697 68.103 67.561 68.731 -3.6275 0.035113 -0.00016957 NaN 45.004 70 32 3 NaN NaN NaN NaN 0 NaN NaN 0 3793400 5878 2821 3588 3592 -0.06797822270550569 DEIEPAAM 8 Unmodified _DEIEPAAM_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 438.194393 874.374234 0.19049 8.3473E-05 -0.46563 -0.00020404 -0.27514 -0.00012056 438.1942821866557 71.588 1.1244 68.082 67.621 68.746 -3.5057 0.01386 -0.00022688 NaN 45.004 82 31 3 NaN NaN NaN NaN 0 NaN NaN 0 4244600 5879 2821 3588 3592 -0.06797822270550569 DEIGKMELF 9 Unmodified _DEIGKMELF_ 0 0 0 ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR ENST00000487953.1_1_1:233091430-233112053:+|nuORF ENST00000487953.1_1_1:233091430-233112053:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2651977539062 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 145.8 1 145.8 145.3 146.3 0 0 0 0 0.23508 1 29145 29145 13.042 1.4022 1 5880 3952 3589 3593 6228 6228 -0.020890292482363293 DEIGKMELF 9 Unmodified _DEIGKMELF_ 0 0 0 ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR ENST00000487953.1_1_1:233091430-233112053:+|nuORF ENST00000487953.1_1_1:233091430-233112053:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27734375 2 541.26535 1080.51615 0.32144 0.00017398 0.1571 8.5032E-05 0.47854 0.00025901 541.265377157852 150.41 0.56767 145.68 145.43 146 -4.7323 31 15 3 0 0 0 0.18865 2 29869 29869;29889 38.615 16.868 1 4294700 5881 3952 3589 3593 6229;6230 6229 -0.020890292482363293 DEIGKMELF 9 Unmodified _DEIGKMELF_ 0 0 0 ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR ENST00000487953.1_1_1:233091430-233112053:+|nuORF ENST00000487953.1_1_1:233091430-233112053:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2656860351562 2 541.26535 1080.51615 0.19566 0.00010591 0.25352 0.00013722 0.44918 0.00024313 541.2654205623435 150.96 0.98698 145.72 144.99 145.97 -5.2365 59 27 3 0 0 0 0.10699 2 29258 29212;29258 53.404 22.767 1 4053500 5882 3952 3589 3593 6231;6232 6232 -0.020890292482363293 DEIGKMELF 9 Unmodified _DEIGKMELF_ 0 0 0 ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR ENST00000487953.1_1_1:233091430-233112053:+|nuORF ENST00000487953.1_1_1:233091430-233112053:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.265625 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 150.79 1 145.67 145.17 146.17 -5.1204 0 0 0 0.1543 1 29226 29226 29.841 8.0939 1 5883 3952 3589 3593 6233 6233 -0.020890292482363293 DEIGKMELF 9 Unmodified _DEIGKMELF_ 0 0 0 ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR ENST00000487953.1_1_1:233091430-233112053:+|nuORF ENST00000487953.1_1_1:233091430-233112053:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.265625 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 151.02 1 145.84 145.34 146.34 -5.1759 0 0 0 0.18966 1 29274 29274 24.882 11.267 1 5884 3952 3589 3593 6234 6234 -0.020890292482363293 DEIGRKVY 8 Unmodified _DEIGRKVY_ 0 0 0 nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENSG00000156787|ENST00000287380|TBC1D31 nc|ENSG00000156787|Q96DN5-2|TBC1D31 nc|ENSG00000156787|Q96DN5-2|TBC1D31 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2626037597656 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 82.107 1 78.419 77.919 78.919 -3.6879 0 0 0 0.21452 1 15654 15654 13.508 0.97634 1 5885 5103 3590 3594 6235 6235 0.023328834091330464 DEIIDNGF 8 Unmodified _DEIIDNGF_ 0 0 0 tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1 tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1 tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5421142578125 2 461.711265 921.407977 NaN NaN NaN NaN NaN NaN NaN 62.854 1 59.893 59.393 60.393 -2.9614 0 0 0 0.20896 1 12132 12132 18.135 5.6034 1 5886 26346 3591 3595 6236 6236 -0.05587077507129834 DEIKDKTA 8 Unmodified _DEIKDKTA_ 0 0 0 ENSG00000147251|ENST00000276202|DOCK11;ENST00000553480.1_1_14:45329665-45330565:-|nuORF ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2484436035156 2 460.24019 918.465826 0.24109 0.00011096 -0.45791 -0.00021075 -0.21682 -9.9788E-05 460.2398491412787 35.523 0.4105 35.523 35.346 35.757 0 19 11 2 0 0 0 0.66265 2 6495 6495;6524 18.135 1.0951 1 648440 5887 4694 3592 3596 6237;6238 6237 0.0033318441827532297 DEIKDKTA 8 Unmodified _DEIKDKTA_ 0 0 0 ENSG00000147251|ENST00000276202|DOCK11;ENST00000553480.1_1_14:45329665-45330565:-|nuORF ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2489013671875 2 460.24019 918.465826 0.21635 9.9575E-05 -0.73394 -0.00033779 -0.51758 -0.00023821 460.2398651508732 37.616 0.44846 35.279 35.016 35.464 -2.3375 16 12 2 0 0 0 0.73426 1 6638 6638 9.3474 0 1 483580 5888 4694 3592 3596 6239 6239 0.0033318441827532297 DEIKEGIQY 9 Unmodified _DEIKEGIQY_ 0 0 0 ENSG00000172482|ENST00000307503|AGXT ENSG00000172482|ENST00000307503|AGXT ENSG00000172482|ENST00000307503|AGXT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.790283203125 2 547.771854 1093.52915 0.18269 0.00010007 -0.25219 -0.00013814 -0.069503 -3.8072E-05 548.2729963036769 84.153 0.41797 80.243 80.074 80.492 -3.9093 16 11 2 0 0 0 0.40602 1 15968 15968 25.399 4.9848 1 1234000 5889 6227 3593 3597 6240 6240 -0.01386874864465426 DEIKTDYY 8 Unmodified _DEIKTDYY_ 0 0 0 REV__nc|ENSG00000137757|P51878-4|CASP5 REV__nc|ENSG00000137757|P51878-4|CASP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6981811523438 2 523.73748 1045.46041 NaN NaN NaN NaN NaN NaN NaN 126.74 1 126.74 126.24 127.24 0 0 0 0 0.21486 1 25013 25013 11.64 0 1 + 5890 13264 3594 3598 6241 6241 -0.06050539164175461 DEIKTDYY 8 Unmodified _DEIKTDYY_ 0 0 0 REV__nc|ENSG00000137757|P51878-4|CASP5 REV__nc|ENSG00000137757|P51878-4|CASP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6920166015625 2 523.73748 1045.46041 -0.499 -0.00026135 -2.1502 -0.0011261 -2.6492 -0.0013875 523.736711217575 131.77 0.92955 126.92 126.64 127.57 -4.8527 48 26 3 0 0 0 0.69713 2 25355 25290;25355 14.838 2.8044 1 2060900 + 5891 13264 3594 3598 6242;6243 6243 -0.06050539164175461 DEIKTDYY 8 Unmodified _DEIKTDYY_ 0 0 0 REV__nc|ENSG00000137757|P51878-4|CASP5 REV__nc|ENSG00000137757|P51878-4|CASP5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6838989257812 2 523.73748 1045.46041 NaN NaN NaN NaN NaN NaN NaN 131.77 1 126.97 126.47 127.47 -4.799 0 0 0 0.22674 1 25367 25367 6.3914 3.7602 1 + 5892 13264 3594 3598 6244 6244 -0.06050539164175461 DEINLPDM 8 Oxidation (M) _DEINLPDM(Oxidation (M))_ DEINLPDM(1) DEINLPDM(52) 0 0 1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7701416015625 2 481.710408 961.406262 0.42401 0.00020425 -0.37346 -0.0001799 0.050552 2.4352E-05 481.7102662031467 78.835 1.6723 78.835 78.262 79.935 0 124 47 4 0 0 0 8448 2 15272 15272;15305 64.86 58.469 1 29513000 5893 899 3595 3599 6245;6246 6245 3 -0.07598454587400738 DEINLPDM 8 Oxidation (M) _DEINLPDM(Oxidation (M))_ DEINLPDM(1) DEINLPDM(190) 0 0 1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25030517578125 2 481.710408 961.406262 0.041399 1.9942E-05 -0.020896 -1.0066E-05 0.020503 9.8764E-06 481.7104105618793 82.354 2.2367 78.762 78.201 80.438 -3.5921 165 63 4 0 0 0 2.4084000000000003E-33 1 16073 16073 189.78 141.43 1 36963000 5894 899 3595 3599 6247 6247 3 -0.07598454587400738 DEINLPDM 8 Oxidation (M) _DEINLPDM(Oxidation (M))_ DEINLPDM(1) DEINLPDM(120) 0 0 1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2540588378906 2 481.710408 961.406262 0.1309 6.3058E-05 -0.055815 -2.6887E-05 0.075089 3.6171E-05 481.7104116660808 82.773 2.5067 78.9 78.366 80.873 -3.8736 156 71 4 0 0 0 6.1274E-05 1 15689 15689 115.69 75.735 1 24782000 5895 899 3595 3599 6248 6248 3 -0.07598454587400738 DEINSIIDY 9 Unmodified _DEINSIIDY_ 0 0 0 LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2;LAMA2|p.V2281Cfs*12|1|0.36|ENSG00000196569|chr6:129456464-129456465|-/T|frameshift_variant;LAMA2|p.A2665Cfs*4|1|0.15|ENSG00000196569|chr6:129491988-129491989|-/G|frameshift_variant LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2657470703125 2 541.256037 1080.49752 0.30131 0.00016308 -0.32216 -0.00017437 -0.020853 -1.1287E-05 541.2558468289681 111.53 0.66117 111.53 111.21 111.87 0 32 18 2 0 0 0 0.2932 1 22009 22009 14.957 0 1 2991400 5896 7283 3596 3600 6249 6249 -0.03950867618414122 DEIPEHYY 8 Unmodified _DEIPEHYY_ 0 0 0 PITPNC1|p.R148H|1|0.07|ENSG00000154217|chr17:67632219-67632219|G/A|missense_variant PITPNC1|p.R148H|1|0.07|ENSG00000154217|chr17:67632219-67632219|G/A|missense_variant PITPNC1|p.R148H|1|0.07|ENSG00000154217|chr17:67632219-67632219|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2738647460938 2 533.229822 1064.44509 0.45119 0.00024059 3.7391 0.0019938 4.1903 0.0022344 533.2321794072134 101.24 0.56004 97.247 96.86 97.42 -3.9895 22 15 2 0 0 0 0.95284 1 19453 19453 14.582 0 1 745260 5897 12792 3597 3601 6250 6250 -0.08455405961376528 DEIRGYKL 8 Unmodified _DEIRGYKL_ 0 0 0 HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant;HTATSF1|p.V610Cfs*2|1|0.32|ENSG00000102241|chrX:136511568-136511568|A/-|frameshift_variant;ENSG00000102241|ENST00000218364|HTATSF1;HTATSF1|p.T358Pfs*9|1|0.2|ENSG00000102241|chrX:136510815-136510815|A/-|frameshift_variant HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.0055236816406 3 331.850308 992.529095 -0.29322 -9.7307E-05 0.26606 8.8291E-05 -0.027168 -9.0156E-06 331.8503369331661 66.585 0.66087 63.477 62.991 63.652 -3.1086 31 18 2 0 0 0 0.98676 1 12890 12890 6.7232 0 1 1776800 5898 2120 3598 3602 6251 6251 0.03253169926199462 DEIRVWLDNFQ 11 Unmodified _DEIRVWLDNFQ_ 0 0 0 REV__ENSG00000269113|ENST00000606738|TRABD2B REV__ENSG00000269113|ENST00000606738|TRABD2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7275085449219 3 478.905253 1433.69393 -0.04346 -2.0813E-05 -0.29399 -0.00014079 -0.33744 -0.0001616 478.9053456873478 75.447 0.79312 72.032 71.539 72.332 -3.4151 47 22 3 0 0 0 0.59836 1 14671 14671 0.03141 0 1 5287700 + 5899 19911 3599 3603 6252 6252 -0.005570627246697768 DEISTNVSV 9 Unmodified _DEISTNVSV_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7830810546875 2 482.235104 962.455655 0.29211 0.00014086 2.0288 0.00097836 2.3209 0.0011192 482.2355348908267 76.749 1.2237 76.749 76.273 77.496 0 93 34 4 0 0 0 0.62921 1 14939 14939 18.146 0 1 4705000 5900 5824 3600 3604 6253 6253 -0.02707423306947021 DEISTNVSV 9 Unmodified _DEISTNVSV_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7786865234375 2 482.235104 962.455655 NaN NaN NaN NaN NaN NaN NaN 80.208 1 76.698 76.198 77.198 -3.5102 0 0 0 0.04992 1 15664 15664 52.268 12.319 1 5901 5824 3600 3604 6254 6254 -0.02707423306947021 DEISTNVSV 9 Unmodified _DEISTNVSV_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.235104 962.455655 -0.26694 -0.00012873 3.0127 0.0014528 2.7458 0.0013241 482.23619165917484 80.415 3.0304 76.73 75.295 78.325 -3.6847 -0.0097319 0.0004486 NaN 18.146 151 86 4 NaN NaN NaN NaN 0 NaN NaN 0 6732300 5902 5824 3600 3604 -0.02707423306947021 DEITAVGNP 9 Unmodified _DEITAVGNP_ 0 0 0 REV__ENSG00000151812|ENST00000556826|SLC35F4 REV__ENSG00000151812|ENST00000556826|SLC35F4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2245178222656 2 458.224539 914.434526 -0.26301 -0.00012052 0.1317 6.0348E-05 -0.13131 -6.0171E-05 458.22460840704053 41.697 0.68682 39.062 38.847 39.534 -2.6348 28 19 2 0 0 0 0.46541 1 7816 7816 21.747 0.87544 1 786810 + 5903 17085 3601 3605 6255 6255 -0.0261138861579866 DEITAVGNP 9 Unmodified _DEITAVGNP_ 0 0 0 REV__ENSG00000151812|ENST00000556826|SLC35F4 REV__ENSG00000151812|ENST00000556826|SLC35F4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.224539 914.434526 -0.26301 -0.00012052 0.1317 6.0348E-05 -0.13131 -6.0171E-05 458.22460840704053 41.697 0.68682 39.062 38.847 39.534 -2.6348 -0.14527 -3.5483E-06 NaN 21.747 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 786810 + 5904 17085 3601 3605 -0.0261138861579866 DEITILSY 8 Unmodified _DEITILSY_ 0 0 0 REV__NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant REV__NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 477.2459716796875 2 477.244941 952.475328 NaN NaN NaN NaN NaN NaN NaN 130.96 1 126.33 125.83 126.83 -4.6359 0 0 0 0.2343 1 25809 25809 0.25148 0.12861 1 + 5905 14239 3602 3606 6256 6256 -0.0028104729618689817 DEITLESV 8 Unmodified _DEITLESV_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;AHCTF1|p.G1113Wfs*13|1|0.07|ENSG00000153207|chr1:246867281-246867282|-/A|frameshift_variant ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.752197265625 2 453.226748 904.438943 0.38401 0.00017405 -0.11042 -5.0045E-05 0.27359 0.000124 453.2265732637717 108.48 0.84677 108.48 108.07 108.92 0 40 23 3 0 0 0 0.038062 1 21313 21313 57.885 45.886 1 2735000 5906 4962 3603 3607 6257 6257 -0.017099241928917763 DEITLESV 8 Unmodified _DEITLESV_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;AHCTF1|p.G1113Wfs*13|1|0.07|ENSG00000153207|chr1:246867281-246867282|-/A|frameshift_variant ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7548522949219 2 453.226748 904.438943 -0.28858 -0.00013079 0.5043 0.00022856 0.21572 9.7771E-05 453.2269401661242 112.89 0.85075 108.44 107.98 108.83 -4.4539 40 23 2 0 0 0 0.1059 1 22243 22243 23.722 17.331 1 1680100 5907 4962 3603 3607 6258 6258 -0.017099241928917763 DEITLESV 8 Unmodified _DEITLESV_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;AHCTF1|p.G1113Wfs*13|1|0.07|ENSG00000153207|chr1:246867281-246867282|-/A|frameshift_variant ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7521667480469 2 453.226748 904.438943 -0.011201 -5.0765E-06 0.013709 6.2131E-06 0.0025078 1.1366E-06 453.22666057792145 113.06 0.8129 108.53 108.18 108.99 -4.5259 36 22 2 0 0 0 0.27274 1 21766 21766 38.151 13.477 1 2531100 5908 4962 3603 3607 6259 6259 -0.017099241928917763 DEITLESV 8 Unmodified _DEITLESV_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;AHCTF1|p.G1113Wfs*13|1|0.07|ENSG00000153207|chr1:246867281-246867282|-/A|frameshift_variant ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7531433105469 2 453.226748 904.438943 0.53408 0.00024206 -0.53972 -0.00024461 -0.0056344 -2.5536E-06 453.2264459764838 112.72 0.80015 108.44 108.05 108.85 -4.2725 34 22 2 0 0 0 0.12109 1 21678 21678 28.46 25.817 1 1349200 5909 4962 3603 3607 6260 6260 -0.017099241928917763 DEITLLEE 8 Unmodified _DEITLLEE_ 0 0 0 REV__ENSG00000115267|ENST00000649979|IFIH1 REV__ENSG00000115267|ENST00000649979|IFIH1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2391662597656 2 481.239855 960.465157 NaN NaN NaN NaN NaN NaN NaN 130.94 1 126.1 125.6 126.6 -4.8355 0 0 0 0.2343 1 25141 25141 0.12286 0.049601 1 + 5910 15417 3604 3608 6261 6261 -0.016656550214179333 DEITYVEL 8 Unmodified _DEITYVEL_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000468690.2_2_1:245019158-245019479:-|nuORF ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.7393493652344 2 491.242398 980.470243 0.15432 7.5809E-05 0.25669 0.0001261 0.41101 0.00020191 491.2424689626955 142.04 0.78081 137.01 136.59 137.37 -5.0261 51 22 3 0 0 0 0.074656 1 27387 27387 51.264 22.804 1 3249900 5911 4960 3605 3609 6262 6262 -0.020773511587890425 DEITYVEL 8 Unmodified _DEITYVEL_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000468690.2_2_1:245019158-245019479:-|nuORF ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 491.242398 980.470243 0.19043 9.3549E-05 -0.21474 -0.00010549 -0.024307 -1.194E-05 491.2421606896373 136.86 0.68625 136.86 136.41 137.1 0 -0.14251 -0.00033892 NaN 51.264 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 4148200 5912 4960 3605 3609 -0.020773511587890425 DEITYVEL 8 Unmodified _DEITYVEL_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000468690.2_2_1:245019158-245019479:-|nuORF ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 491.242398 980.470243 0.15106 7.4206E-05 0.098315 4.8296E-05 0.24937 0.0001225 491.2423828085201 141.75 1.0089 137.1 136.61 137.62 -4.6493 0.10313 -3.1352E-05 NaN 51.264 44 28 2 NaN NaN NaN NaN 0 NaN NaN 0 5726800 5913 4960 3605 3609 -0.020773511587890425 DEITYVEL 8 Unmodified _DEITYVEL_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000468690.2_2_1:245019158-245019479:-|nuORF ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 491.242398 980.470243 0.046294 2.2742E-05 0.17966 8.8257E-05 0.22596 0.000111 491.2424313908092 141.89 0.76723 137.03 136.61 137.37 -4.8678 0.027264 4.8571E-05 NaN 51.264 46 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3457800 5914 4960 3605 3609 -0.020773511587890425 DEIVCIQH 8 Unmodified _DEIVCIQH_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7298889160156 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 147.1 1 142.41 141.91 142.91 -4.6868 0 0 0 0.23025 1 29181 29181 0.25148 0 1 5915 2140 3606 3610 6263 6263 -0.03618738250975184 DEIYHTGTF 9 Unmodified _DEIYHTGTF_ 0 0 0 nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF nc|ENSG00000196365|P36776-2|LONP1 nc|ENSG00000196365|P36776-2|LONP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2620849609375 2 541.743096 1081.47164 0.74621 0.00040425 -0.57196 -0.00030986 0.17425 9.4398E-05 541.7426001001369 79.841 0.66779 79.841 79.477 80.145 0 30 18 2 0 0 0 0.026338 1 15535 15535 88.904 58.267 1 2441000 5916 7259 3607 3611 6264 6264 -0.06583717070043349 DEIYHTGTF 9 Unmodified _DEIYHTGTF_ 0 0 0 nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF nc|ENSG00000196365|P36776-2|LONP1 nc|ENSG00000196365|P36776-2|LONP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2618408203125 2 541.743096 1081.47164 0.19748 0.00010698 -0.080672 -4.3704E-05 0.1168 6.3278E-05 541.7428017596909 83.71 0.59155 80.102 79.797 80.389 -3.6079 30 16 2 0 0 0 0.12295 1 16338 16338 64.236 30.134 1 2342700 5917 7259 3607 3611 6265 6265 -0.06583717070043349 DEIYHTGTF 9 Unmodified _DEIYHTGTF_ 0 0 0 nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF nc|ENSG00000196365|P36776-2|LONP1 nc|ENSG00000196365|P36776-2|LONP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2623901367188 2 541.743096 1081.47164 0.19299 0.00010455 -0.27015 -0.00014635 -0.077161 -4.1801E-05 541.742764315601 83.99 0.56396 80.081 79.79 80.353 -3.9093 24 15 2 0 0 0 0.49001 1 15983 15983 28.487 8.0332 1 1813300 5918 7259 3607 3611 6266 6266 -0.06583717070043349 DEIYHTGTF 9 Unmodified _DEIYHTGTF_ 0 0 0 nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF nc|ENSG00000196365|P36776-2|LONP1 nc|ENSG00000196365|P36776-2|LONP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2622680664062 2 541.743096 1081.47164 0.028925 1.567E-05 0.32314 0.00017506 0.35206 0.00019073 542.2450310323792 83.716 0.70326 80.018 79.726 80.429 -3.6985 32 19 2 0 0 0 0.14834 1 15945 15945 57.471 23.369 1 2078300 5919 7259 3607 3611 6267 6267 -0.06583717070043349 DEKAFVFSV 9 Unmodified _DEKAFVFSV_ 0 0 0 ENST00000565112.1_1_16:46836866-46841953:-|nuORF;nc|nan|Q6PH81-2|C16orf87;ENSG00000155330|ENST00000285697|C16orf87 ENST00000565112.1_1_16:46836866-46841953:-|nuORF ENST00000565112.1_1_16:46836866-46841953:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2691650390625 2 521.266207 1040.51786 -0.10329 -5.3841E-05 0.16076 8.3801E-05 0.057476 2.996E-05 521.2661873956558 153.18 0.49899 148.42 148.08 148.58 -4.7684 29 13 3 0 0 0 0.5685 1 30418 30418 15.248 2.206 1 3144100 5920 5043 3608 3612 6268 6268 -0.0007765216794268781 DEKAFVFSV 9 Unmodified _DEKAFVFSV_ 0 0 0 ENST00000565112.1_1_16:46836866-46841953:-|nuORF;nc|nan|Q6PH81-2|C16orf87;ENSG00000155330|ENST00000285697|C16orf87 ENST00000565112.1_1_16:46836866-46841953:-|nuORF ENST00000565112.1_1_16:46836866-46841953:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.266207 1040.51786 0.21297 0.00011101 0.0092755 4.835E-06 0.22224 0.00011585 521.2661264125262 148.42 0.55737 148.42 148.05 148.61 0 0.045104 1.7863E-05 NaN 15.248 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4306400 5921 5043 3608 3612 -0.0007765216794268781 DEKDFYLY 8 Unmodified _DEKDFYLY_ 0 0 0 ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24 ENST00000555762.1_1_14:94524146-94547480:-|nuORF ENST00000555762.1_1_14:94524146-94547480:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7915649414062 2 546.747847 1091.48114 0.31948 0.00017467 -0.11126 -6.0829E-05 0.20822 0.00011384 546.7477369358738 116.58 0.93867 116.58 116.12 117.05 0 82 26 4 0 0 0 0.16655 3 22941 22941;22993;23001 49.933 17.628 1 29419000 5922 1769 3609 3613 6269;6270;6271 6269 -0.06093948784518943 DEKDFYLY 8 Unmodified _DEKDFYLY_ 0 0 0 ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24 ENST00000555762.1_1_14:94524146-94547480:-|nuORF ENST00000555762.1_1_14:94524146-94547480:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.789306640625 2 546.747847 1091.48114 0.43512 0.0002379 -0.10072 -5.507E-05 0.33439 0.00018283 546.747667910744 121.55 0.92548 117.01 116.49 117.42 -4.5476 81 25 4 0 0 0 0.19921 2 24000 23885;24000 45.7 13.394 1 24624000 5923 1769 3609 3613 6272;6273 6273 -0.06093948784518943 DEKDFYLY 8 Unmodified _DEKDFYLY_ 0 0 0 ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24 ENST00000555762.1_1_14:94524146-94547480:-|nuORF ENST00000555762.1_1_14:94524146-94547480:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7931518554688 2 546.747847 1091.48114 0.59946 0.00032775 -0.29038 -0.00015876 0.30908 0.00016899 546.7475896513886 121.55 1.1264 116.87 116.35 117.48 -4.6873 92 31 4 0 0 0 0.19921 2 23285 23285;23389 45.7 13.394 1 22334000 5924 1769 3609 3613 6274;6275 6274 -0.06093948784518943 DEKEFIHF 8 Unmodified _DEKEFIHF_ 0 0 0 ENSG00000066697|ENST00000395067|MSANTD3;MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant ENSG00000066697|ENST00000395067|MSANTD3 ENSG00000066697|ENST00000395067|MSANTD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2765502929688 2 532.756007 1063.49746 0.078038 4.1575E-05 0.17382 9.2602E-05 0.25185 0.00013418 532.7560619040131 112.67 0.78072 112.67 112.25 113.03 0 74 22 4 0 0 0 0.28309 1 22113 22113 65.235 38.351 1 13176000 5925 1375 3610 3614 6276 6276 -0.03174822827782009 DEKEFIHF 8 Unmodified _DEKEFIHF_ 0 0 0 ENSG00000066697|ENST00000395067|MSANTD3;MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant ENSG00000066697|ENST00000395067|MSANTD3 ENSG00000066697|ENST00000395067|MSANTD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2743530273438 2 532.756007 1063.49746 0.20257 0.00010792 -0.15296 -8.149E-05 0.049609 2.6429E-05 532.7559284467495 116.99 0.90609 112.51 112.11 113.01 -4.486 75 25 4 0 0 0 0.0083977 1 23082 23082 139.14 81.667 1 9754200 5926 1375 3610 3614 6277 6277 -0.03174822827782009 DEKEFIHF 8 Unmodified _DEKEFIHF_ 0 0 0 ENSG00000066697|ENST00000395067|MSANTD3;MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant ENSG00000066697|ENST00000395067|MSANTD3 ENSG00000066697|ENST00000395067|MSANTD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28125 2 532.756007 1063.49746 0.73742 0.00039286 -0.72223 -0.00038477 0.015187 8.0911E-06 532.7556290908992 116.99 1.0109 112.41 111.97 112.98 -4.5815 81 28 5 0 0 0 2.1483E-05 1 22465 22465 139.14 78.749 1 9039300 5927 1375 3610 3614 6278 6278 -0.03174822827782009 DEKEFIHF 8 Unmodified _DEKEFIHF_ 0 0 0 ENSG00000066697|ENST00000395067|MSANTD3;MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant ENSG00000066697|ENST00000395067|MSANTD3 ENSG00000066697|ENST00000395067|MSANTD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2811279296875 2 532.756007 1063.49746 0.52729 0.00028092 -0.30803 -0.00016411 0.21925 0.00011681 532.7558526053224 116.76 0.88153 112.4 111.99 112.87 -4.3585 93 24 5 0 0 0 0.13046 1 22517 22517 92.822 41.967 1 11748000 5928 1375 3610 3614 6279 6279 -0.03174822827782009 DEKEISHVL 9 Unmodified _DEKEISHVL_ 0 0 0 nc|ENSG00000164338|Q8TED0-2|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;ENSG00000164338|ENST00000296792|UTP15 nc|ENSG00000164338|Q8TED0-2|UTP15 nc|ENSG00000164338|Q8TED0-2|UTP15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5574035644531 3 357.188989 1068.54514 -0.58141 -0.00020767 0.92452 0.00033023 0.34311 0.00012256 357.18935295005144 65.09 0.86362 65.09 64.515 65.379 0 46 24 3 0 0 0 0.63326 1 12519 12519 10.8 2.644 1 3056600 5929 5537 3611 3615 6280 6280 0.013608313724262189 DEKELRTSF 9 Unmodified _DEKELRTSF_ 0 0 0 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2048645019531 3 375.524261 1123.55095 -0.29344 -0.00011019 0.35863 0.00013468 0.065197 2.4483E-05 375.52427992683573 58.985 0.70468 56.074 55.683 56.388 -2.9105 38 19 3 0 0 0 0.59658 1 11325 11325 29.437 3.4165 1 2711600 5930 5968 3612 3616 6281 6281 -0.005880701158957891 DEKELRTSF 9 Unmodified _DEKELRTSF_ 0 0 0 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2043151855469 3 375.524261 1123.55095 0.085666 3.217E-05 -0.20728 -7.7838E-05 -0.12161 -4.5668E-05 375.52410328517163 59.359 0.63906 56.045 55.604 56.243 -3.3139 35 17 3 0 0 0 0.80676 1 11049 11049 14.218 0 1 2080200 5931 5968 3612 3616 6282 6282 -0.005880701158957891 DEKELRTSF 9 Unmodified _DEKELRTSF_ 0 0 0 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.524261 1123.55095 -0.31816 -0.00011948 0.3105 0.0001166 -0.0076613 -2.877E-06 375.52433198465354 56.12 0.63194 56.12 55.728 56.36 0 0.044532 0.0001042 NaN 29.437 34 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2576800 5932 5968 3612 3616 -0.005880701158957891 DEKELRTSF 9 Unmodified _DEKELRTSF_ 0 0 0 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 375.524261 1123.55095 -0.57096 -0.00021441 0.50902 0.00019115 -0.061941 -2.326E-05 375.52437868948635 59.283 0.59021 56.062 55.737 56.327 -3.2207 -0.012895 0.00032784 NaN 29.437 40 16 4 NaN NaN NaN NaN 0 NaN NaN 0 2827300 5933 5968 3612 3616 -0.005880701158957891 DEKEWDGDAD 10 Unmodified _DEKEWDGDAD_ 0 0 0 REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2609252929688 2 590.225465 1178.43638 NaN NaN NaN NaN NaN NaN NaN 170.9 1 165.98 165.48 166.48 -4.9149 0 0 0 2.8426 1 33809 33809 0.063865 0.032455 1 + 5934 13643 3613 3617 6283 6283 -0.14570424388512038 DEKFAKLKY 9 Unmodified _DEKFAKLKY_ 0 0 0 tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1 tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1 tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2130432128906 3 381.213246 1140.61791 -0.020225 -7.7099E-06 -0.022466 -8.5642E-06 -0.04269 -1.6274E-05 381.2131760886015 74.566 0.8458 74.566 74.221 75.067 0 58 23 3 0 0 0 0.6329 1 14430 14430 7.1017 2.2047 1 9095600 5935 26057 3614 3618 6284 6284 0.053225851658453394 DEKGRKNY 8 Unmodified _DEKGRKNY_ 0 0 0 tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.12835693359375 2 505.256705 1008.49886 0.61612 0.0003113 -0.38094 -0.00019247 0.23518 0.00011883 505.25645960318803 22.633 0.72089 21.08 20.651 21.372 -1.5532 65 20 5 0 0 0 1.0095 1 3835 3835 5.7604 0 1 24069000 5936 26317 3615 3619 6285 6285 -0.005051887390095544 DEKGRKNY 8 Unmodified _DEKGRKNY_ 0 0 0 tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 505.256705 1008.49886 0.18767 9.4822E-05 0.14381 7.2663E-05 0.33148 0.00016748 505.25673316882944 21.175 0.75918 21.175 20.668 21.427 0 0.081114 -0.00015637 NaN 5.7604 66 21 5 NaN NaN NaN NaN 0 NaN NaN 0 22165000 5937 26317 3615 3619 -0.005051887390095544 DEKGRKNY 8 Unmodified _DEKGRKNY_ 0 0 0 tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 505.256705 1008.49886 -0.40837 -0.00020633 0.63947 0.0003231 0.2311 0.00011676 505.25703155774534 22.55 0.81097 21.096 20.697 21.507 -1.4535 0.002855 0.0003445 NaN 5.7604 65 22 5 NaN NaN NaN NaN 0 NaN NaN 0 24240000 5938 26317 3615 3619 -0.005051887390095544 DEKGRKNY 8 Unmodified _DEKGRKNY_ 0 0 0 tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 505.256705 1008.49886 -0.61009 -0.00030825 0.75036 0.00037913 0.14027 7.0874E-05 505.25706313880715 22.812 0.71687 21.023 20.607 21.324 -1.7886 -0.070108 0.00045656 NaN 5.7604 70 20 5 NaN NaN NaN NaN 0 NaN NaN 0 16371000 5939 26317 3615 3619 -0.005051887390095544 DEKHHRRKRRF 11 Unmodified _DEKHHRRKRRF_ 0 0 0 REV__ENSG00000145888|ENST00000274576|GLRA1 REV__ENSG00000145888|ENST00000274576|GLRA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2765502929688 3 522.294179 1563.86071 NaN NaN NaN NaN NaN NaN NaN 145.23 1 145.23 144.73 145.73 0 0 0 0 0.22632 1 29022 29022 0.172 0.14579 1 + 5940 16859 3616 3620 6286 6286 0.10133267734227047 DEKHSKKV 8 Unmodified _DEKHSKKV_ 0 0 0 tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1 tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1 tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.14434814453125 3 324.182058 969.524344 NaN NaN NaN NaN NaN NaN NaN 73.789 1 70.424 69.924 70.924 -3.3643 0 0 0 0.21486 1 14387 14387 1.4819 0.41044 1 5941 25936 3617 3621 6287 6287 0.03836285783427229 DEKIISGL 8 Unmodified _DEKIISGL_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21490478515625 2 437.74765 873.480748 -0.028634 -1.2534E-05 -0.39828 -0.00017435 -0.42691 -0.00018688 437.74744893870206 95.009 1.2117 95.009 94.279 95.491 0 80 34 3 0 0 0 0.0028501 1 18599 18599 110.67 1.0454 1 15163000 5942 1474 3618 3622 6288 6288 0.03894676286279264 DEKIISGL 8 Unmodified _DEKIISGL_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2169189453125 2 437.74765 873.480748 -0.099113 -4.3387E-05 -0.27226 -0.00011918 -0.37137 -0.00016257 437.74745485435307 98.757 1.1761 94.625 93.987 95.163 -4.1326 94 33 4 0 0 0 4.7765E-05 1 19357 19357 110.67 1.0454 1 20436000 5943 1474 3618 3622 6289 6289 0.03894676286279264 DEKIISGL 8 Unmodified _DEKIISGL_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2165222167969 2 437.74765 873.480748 0.17957 7.8607E-05 -0.49314 -0.00021587 -0.31357 -0.00013726 437.7473613538168 99.058 1.2895 94.789 94.086 95.375 -4.2692 93 36 4 0 0 0 4.7765E-05 1 18892 18892 134.3 24.666 1 19672000 5944 1474 3618 3622 6290 6290 0.03894676286279264 DEKIISGL 8 Unmodified _DEKIISGL_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2358093261719 2 437.74765 873.480748 -0.026339 -1.153E-05 -0.25072 -0.00010975 -0.27706 -0.00012128 437.7474632744534 98.753 1.486 94.796 93.854 95.34 -3.9564 108 43 4 0 0 0 4.7765E-05 1 18951 18951 134.3 16.697 1 19179000 5945 1474 3618 3622 6291 6291 0.03894676286279264 DEKILKMH 8 Unmodified _DEKILKMH_ 0 0 0 REV__ENST00000310045.7_1_18:65182523-65182601:-|nuORF REV__ENST00000310045.7_1_18:65182523-65182601:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 338.86041259765625 3 338.519794 1012.53755 -0.16027 -5.4255E-05 -0.21877 -7.4059E-05 -0.37904 -0.00012831 338.5196817084116 30.79 0.3506 28.716 28.5 28.85 -2.0743 14 9 2 0 0 0 0.8956 1 5299 5299 0.68139 0.55853 1 507720 + 5946 20476 3619 3623 6292 6292 0.03178400571152906 DEKILKMH 8 Unmodified _DEKILKMH_ 0 0 0 REV__ENST00000310045.7_1_18:65182523-65182601:-|nuORF REV__ENST00000310045.7_1_18:65182523-65182601:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 338.519794 1012.53755 0.14467 4.8973E-05 -0.55122 -0.0001866 -0.40656 -0.00013763 338.5195252846773 30.716 0.35346 28.599 28.435 28.789 -2.1167 -0.076559 -0.00022773 NaN 0.68139 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 698320 + 5947 20476 3619 3623 0.03178400571152906 DEKILKMH 8 Unmodified _DEKILKMH_ 0 0 0 REV__ENST00000310045.7_1_18:65182523-65182601:-|nuORF REV__ENST00000310045.7_1_18:65182523-65182601:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 338.519794 1012.53755 0.32251 0.00010918 -0.041464 -1.4036E-05 0.28105 9.514E-05 338.85427360179386 30.605 0.28692 28.712 28.591 28.878 -1.8928 0.036283 0.00028996 NaN 0.68139 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 492340 + 5948 20476 3619 3623 0.03178400571152906 DEKIVPIL 8 Unmodified _DEKIVPIL_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 464.1612548828125 2 463.781493 925.548434 0.066333 3.0764E-05 -0.19721 -9.1463E-05 -0.13088 -6.0699E-05 463.7813443914915 145.74 0.54694 140.63 140.35 140.89 -5.1108 23 15 2 0 0 0 0.89552 1 28175 28175 26.341 8.2063 1 2028300 5949 4516 3620 3624 6293 6293 0.08268126217080862 DEKIVPIL 8 Unmodified _DEKIVPIL_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 463.781493 925.548434 0.0049734 2.3066E-06 0.0037755 1.751E-06 0.0087488 4.0575E-06 463.78136876188927 145.24 0.66298 140.57 140.27 140.93 -4.6694 -0.042235 9.9402E-05 NaN 26.341 24 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1998600 5950 4516 3620 3624 0.08268126217080862 DEKKFDEAL 9 Unmodified _DEKKFDEAL_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF nc|ENSG00000152556|P08237-2|PFKM nc|ENSG00000152556|P08237-2|PFKM MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7717895507812 2 547.771854 1093.52915 0.12082 6.6184E-05 -0.073776 -4.0412E-05 0.047049 2.5772E-05 547.7717643132373 56.913 0.87687 56.913 56.499 57.376 0 76 24 4 0 0 0 0.030811 3 10895 10811;10895;10938 80.676 38.836 1 22766000 5951 4930 3621 3625 6294;6295;6296 6295 -0.013868748644881634 DEKKFDEAL 9 Unmodified _DEKKFDEAL_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF nc|ENSG00000152556|P08237-2|PFKM nc|ENSG00000152556|P08237-2|PFKM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7717895507812 2 547.771854 1093.52915 0.1549 8.4849E-05 -0.13744 -7.5285E-05 0.01746 9.5643E-06 547.7717730735382 59.661 1.6126 56.727 55.625 57.238 -2.9333 105 45 4 0 0 0 0.0087973 2 11493 11449;11493 107.1 57.167 1 25489000 5952 4930 3621 3625 6297;6298 6298 -0.013868748644881634 DEKKFDEAL 9 Unmodified _DEKKFDEAL_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF nc|ENSG00000152556|P08237-2|PFKM nc|ENSG00000152556|P08237-2|PFKM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7719116210938 2 547.771854 1093.52915 0.113 6.1899E-05 -0.069746 -3.8205E-05 0.043257 2.3695E-05 547.7717699827208 60.03 1.1207 56.716 56.173 57.294 -3.3139 90 31 4 0 0 0 0.010502 6 11155 11090;11110;11142;11155;11197;11241 103.42 53.486 1 28047000 5953 4930 3621 3625 6299;6300;6301;6302;6303;6304 6302 -0.013868748644881634 DEKKFDEAL 9 Unmodified _DEKKFDEAL_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF nc|ENSG00000152556|P08237-2|PFKM nc|ENSG00000152556|P08237-2|PFKM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7718505859375 2 547.771854 1093.52915 0.2144 0.00011744 -0.21105 -0.00011561 0.0033536 1.837E-06 547.7717140282692 59.967 1.0226 56.743 56.253 57.276 -3.2237 92 28 4 0 0 0 0.022252 2 11231 11231;11272 90.135 31.456 1 27783000 5954 4930 3621 3625 6305;6306 6305 -0.013868748644881634 DEKKLILKFL 10 Unmodified _DEKKLILKFL_ 0 0 0 REV__ENST00000525547.5_1_11:112014321-112020942:-|nuORF REV__ENST00000525547.5_1_11:112014321-112020942:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 416.26434326171875 3 416.26383 1245.76966 NaN NaN NaN NaN NaN NaN NaN 66.01 1 62.727 62.227 63.227 -3.2832 0 0 0 0.22588 1 12418 12418 0.69767 0.07084 1 + 5955 17044 3622 3626 6307 6307 0.1566056619358278 DEKKNMNWKQL 11 Unmodified _DEKKNMNWKQL_ 0 0 0 ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C;DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C ENST00000380437.8_1_9:19290781-19335045:+|nuORF ENST00000380437.8_1_9:19290781-19335045:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7296447753906 3 478.578371 1432.71328 NaN NaN NaN NaN NaN NaN NaN 148.13 1 143.07 142.57 143.57 -5.0595 0 0 0 0.22632 1 28688 28688 0.172 0 1 5956 816 3623 3627 6308 6308 0.014235702945825324 DEKKNMNWKQL 11 Unmodified _DEKKNMNWKQL_ 0 0 0 ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C;DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C ENST00000380437.8_1_9:19290781-19335045:+|nuORF ENST00000380437.8_1_9:19290781-19335045:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7410583496094 3 478.578371 1432.71328 NaN NaN NaN NaN NaN NaN NaN 148.14 1 143.09 142.59 143.59 -5.0595 0 0 0 0.23103 1 28692 28692 7.4771 1.2427 1 5957 816 3623 3627 6309 6309 0.014235702945825324 DEKLSQNSTMR 11 Unmodified _DEKLSQNSTMR_ 0 0 0 REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21722412109375 3 436.878598 1307.61396 NaN NaN NaN NaN NaN NaN NaN 98.295 1 94.163 93.663 94.663 -4.1326 0 0 0 0.23001 1 19301 19301 8.2864 0.34103 1 + 5958 15734 3624 3628 6310 6310 -0.027538723901898265 DEKNFVVVM 9 Unmodified _DEKNFVVVM_ 0 0 0 ENSG00000119318|ENST00000358015|RAD23B;ENST00000588329.5_1_19:13056723-13059660:+|nuORF;nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A ENSG00000119318|ENST00000358015|RAD23B;ENST00000588329.5_1_19:13056723-13059660:+|nuORF ENSG00000119318|ENST00000358015|RAD23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2748413085938 2 540.773342 1079.53213 0.29449 0.00015925 -2.1767 -0.0011771 -1.8822 -0.0010179 540.7729496412355 122.72 0.62607 122.72 122.37 123 0 42 17 3 0 0 0 0.24263 1 24189 24189 34.932 11.784 1 3343300 5959 3068;6620 3625 3629 6311 6311 -0.004453230113085738 DEKNFVVVM 9 Unmodified _DEKNFVVVM_ 0 0 0 ENSG00000119318|ENST00000358015|RAD23B;ENST00000588329.5_1_19:13056723-13059660:+|nuORF;nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A ENSG00000119318|ENST00000358015|RAD23B;ENST00000588329.5_1_19:13056723-13059660:+|nuORF ENSG00000119318|ENST00000358015|RAD23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2753295898438 2 540.773342 1079.53213 0.28546 0.00015437 -0.5122 -0.00027698 -0.22674 -0.00012261 541.2748321282234 127.26 0.9422 122.64 122.08 123.03 -4.6172 46 26 3 0 0 0 0.16539 1 25101 25101 41.956 20.209 1 3199600 5960 3068;6620 3625 3629 6312 6312 -0.004453230113085738 DEKNFVVVM 9 Unmodified _DEKNFVVVM_ 0 0 0 ENSG00000119318|ENST00000358015|RAD23B;ENST00000588329.5_1_19:13056723-13059660:+|nuORF;nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A ENSG00000119318|ENST00000358015|RAD23B;ENST00000588329.5_1_19:13056723-13059660:+|nuORF ENSG00000119318|ENST00000358015|RAD23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.275390625 2 540.773342 1079.53213 0.28372 0.00015343 -0.11984 -6.4808E-05 0.16387 8.8619E-05 540.7733273259802 127.44 0.82098 122.65 122.2 123.02 -4.7958 34 22 3 0 0 0 0.17935 1 24491 24491 39.95 20.511 1 2738500 5961 3068;6620 3625 3629 6313 6313 -0.004453230113085738 DEKNFVVVM 9 Unmodified _DEKNFVVVM_ 0 0 0 ENSG00000119318|ENST00000358015|RAD23B;ENST00000588329.5_1_19:13056723-13059660:+|nuORF;nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A ENSG00000119318|ENST00000358015|RAD23B;ENST00000588329.5_1_19:13056723-13059660:+|nuORF ENSG00000119318|ENST00000358015|RAD23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2756958007812 2 540.773342 1079.53213 0.24261 0.0001312 0.44093 0.00023844 0.68354 0.00036964 540.7736048118226 127.37 0.6396 122.67 122.29 122.93 -4.6998 30 17 2 0 0 0 0.04795 2 24507 24465;24507 71.922 33.948 1 3206200 5962 3068;6620 3625 3629 6314;6315 6315 -0.004453230113085738 DEKNINTF 8 Unmodified _DEKNINTF_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67 nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25555419921875 2 490.737814 979.461075 -0.032339 -1.587E-05 -2.7411 -0.0013452 -2.7735 -0.0013611 490.7378118039407 50.503 1.3395 47.622 46.625 47.964 -2.8811 53 37 2 0 0 0 0.002247 1 9540 9540 96.285 54.19 1 3621500 5963 528 3626 3630 6316 6316 -0.029476997244614722 DEKPFSSF 8 Unmodified _DEKPFSSF_ 0 0 0 nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6;RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;ENSG00000169435|ENST00000307439|RASSF6 nc|ENSG00000169435|Q6ZTQ3-3|RASSF6 nc|ENSG00000169435|Q6ZTQ3-3|RASSF6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72247314453125 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 97.097 1 92.862 92.362 93.362 -4.2348 0 0 0 0.20896 1 18542 18542 18.135 1.1927 1 5964 12454 3627 3631 6317 6317 -0.05078487127468634 DEKPLNVF 8 Unmodified _DEKPLNVF_ 0 0 0 REV__ENSG00000073711|ENST00000264977|PPP2R3A REV__ENSG00000073711|ENST00000264977|PPP2R3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.254638671875 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 146.86 1 142.17 141.67 142.67 -4.6868 0 0 0 0.21486 1 29131 29131 9.3474 0.75416 1 + 5965 14303 3628 3632 6318 6318 0.009820786605587273 DEKPNPFY 8 Unmodified _DEKPNPFY_ 0 0 0 REV__nc|ENSG00000121775|Q9GZU3-3|TMEM39B REV__nc|ENSG00000121775|Q9GZU3-3|TMEM39B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.12835693359375 2 505.234907 1008.45526 0.59783 0.00030204 -1.5873 -0.00080194 -0.98944 -0.0004999 505.23423617438436 22.551 0.19861 21.022 20.851 21.049 -1.5284 7 5 2 0 0 0 1.0095 1 3835 3835 5.7604 0 1 298670 + 5966 24019 3629 3633 6319 6319 -0.048627982361495015 DEKPSPGNL 9 Unmodified _DEKPSPGNL_ 0 0 0 nc|ENSG00000144560|Q14135-3|VGLL4;ENST00000426568.5_1_3:11712809-11744508:-|nuORF nc|ENSG00000144560|Q14135-3|VGLL4 nc|ENSG00000144560|Q14135-3|VGLL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73663330078125 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 124.62 1 124.62 124.12 125.12 0 0 0 0 0.23508 1 24576 24576 12.532 0.89125 1 5967 9728 3630 3634 6320 6320 -0.018436997244748454 DEKQFLIS 8 Unmodified _DEKQFLIS_ 0 0 0 tr|U7SEE2|U7SEE2_FUSNURibosomalproteinL11methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmAPE=3SV=1 tr|U7SEE2|U7SEE2_FUSNURibosomalproteinL11methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmAPE=3SV=1 tr|U7SEE2|U7SEE2_FUSNURibosomalproteinL11methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2577819824219 2 490.258382 978.502212 0.21081 0.00010335 0.27233 0.00013351 0.48314 0.00023686 490.25781803439827 116.61 0.73523 112.13 111.72 112.46 -4.486 34 20 3 0 0 0 8448 1 22937 22937 0.68139 0.3018 1 1376600 5968 25877 3631 3635 6321 6321 0.012100613150096251 DEKQQHIVY 9 Unmodified _DEKQQHIVY_ 0 0 0 ENST00000493419.1_1_12:69202221-69210726:+|nuORF;MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-8|MDM2 ENST00000493419.1_1_12:69202221-69210726:+|nuORF ENST00000493419.1_1_12:69202221-69210726:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.718505859375 3 387.196256 1158.56694 -0.077306 -2.9933E-05 -0.29823 -0.00011547 -0.37554 -0.00014541 387.19611992630166 35.672 0.5795 35.672 35.31 35.889 0 60 16 5 0 0 0 0.65397 1 6518 6518 32.037 26.254 1 45904000 5969 3944 3632 3636 6322 6322 -0.006003638790161858 DEKQQHIVY 9 Unmodified _DEKQQHIVY_ 0 0 0 ENST00000493419.1_1_12:69202221-69210726:+|nuORF;MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-8|MDM2 ENST00000493419.1_1_12:69202221-69210726:+|nuORF ENST00000493419.1_1_12:69202221-69210726:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7126159667969 3 387.196256 1158.56694 0.063231 2.4483E-05 -0.42705 -0.00016535 -0.36382 -0.00014087 387.19607454844476 38.055 0.5622 35.613 35.248 35.81 -2.4419 51 15 4 0 0 0 0.1166 1 6741 6741 67.187 64.304 1 77739000 5970 3944 3632 3636 6323 6323 -0.006003638790161858 DEKQQHIVY 9 Unmodified _DEKQQHIVY_ 0 0 0 ENST00000493419.1_1_12:69202221-69210726:+|nuORF;MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-8|MDM2 ENST00000493419.1_1_12:69202221-69210726:+|nuORF ENST00000493419.1_1_12:69202221-69210726:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 387.196256 1158.56694 -0.56045 -0.000217 0.31729 0.00012285 -0.24315 -9.4148E-05 387.19634880150113 38.161 0.61996 35.692 35.297 35.917 -2.4688 0.034272 0.00039849 NaN 67.187 61 17 5 NaN NaN NaN NaN 0 NaN NaN 0 86555000 5971 3944 3632 3636 -0.006003638790161858 DEKQQHIVY 9 Unmodified _DEKQQHIVY_ 0 0 0 ENST00000493419.1_1_12:69202221-69210726:+|nuORF;MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-8|MDM2 ENST00000493419.1_1_12:69202221-69210726:+|nuORF ENST00000493419.1_1_12:69202221-69210726:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 387.196256 1158.56694 -0.44002 -0.00017037 0.086932 3.366E-05 -0.35308 -0.00013671 387.1962605601271 37.992 0.6541 35.655 35.292 35.946 -2.3375 -0.0032903 0.0001309 NaN 67.187 61 18 4 NaN NaN NaN NaN 0 NaN NaN 0 86356000 5972 3944 3632 3636 -0.006003638790161858 DEKSVITY 8 Unmodified _DEKSVITY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7310791015625 2 477.742565 953.470577 -0.40366 -0.00019285 0.58446 0.00027922 0.1808 8.6375E-05 477.7427890213131 62.499 0.69625 62.499 62.106 62.803 0 52 19 3 0 0 0 0.081241 1 12001 12001 74.929 26.583 1 8751900 5973 4896;3487 3633 3637 6324 6324 -0.008019314389457577 DEKSVITY 8 Unmodified _DEKSVITY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74456787109375 2 477.742565 953.470577 0.2356 0.00011255 -0.12375 -5.9122E-05 0.11184 5.3433E-05 477.74249262228255 65.98 0.66113 62.521 62.209 62.87 -3.4581 43 18 3 0 0 0 0.15482 2 12392 12350;12392 52.268 27.081 1 5819900 5974 4896;3487 3633 3637 6325;6326 6326 -0.008019314389457577 DEKSVITY 8 Unmodified _DEKSVITY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.742565 953.470577 0.0051995 2.484E-06 0.098554 4.7084E-05 0.10375 4.9568E-05 477.7425758120886 65.593 0.73761 62.546 62.139 62.876 -3.047 0.035855 -2.3324E-05 NaN 74.929 48 21 3 NaN NaN NaN NaN 0 NaN NaN 0 7869000 5975 4896;3487 3633 3637 -0.008019314389457577 DEKSVITY 8 Unmodified _DEKSVITY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.742565 953.470577 0.31845 0.00015214 -0.061586 -2.9422E-05 0.25687 0.00012272 477.7424632730111 65.758 0.72811 62.474 62.13 62.858 -3.2832 -0.035811 -0.00017634 NaN 74.929 51 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6104500 5976 4896;3487 3633 3637 -0.008019314389457577 DEKTKDVPF 9 Unmodified _DEKTKDVPF_ 0 0 0 ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 3 360.185356 1077.53424 NaN NaN NaN NaN NaN NaN NaN 52.397 1 52.397 51.897 52.897 0 0 0 0 0.20699 1 9959 9959 15.739 8.7015 1 5977 3654 3634 3638 6327 6327 -0.001425710018565951 DEKTKDVPF 9 Unmodified _DEKTKDVPF_ 0 0 0 ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2136535644531 3 360.185356 1077.53424 NaN NaN NaN NaN NaN NaN NaN 52.53 1 52.53 52.03 53.03 0 0 0 0 0.19721 1 9986 9986 17.443 12.727 1 5978 3654 3634 3638 6328 6328 -0.001425710018565951 DEKTKDVPF 9 Unmodified _DEKTKDVPF_ 0 0 0 ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 3 360.185356 1077.53424 NaN NaN NaN NaN NaN NaN NaN 54.985 1 51.85 51.35 52.35 -3.1352 0 0 0 0.081239 1 10154 10154 32.037 21.722 1 5979 3654 3634 3638 6329 6329 -0.001425710018565951 DEKTKDVPF 9 Unmodified _DEKTKDVPF_ 0 0 0 ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2012634277344 3 360.185356 1077.53424 NaN NaN NaN NaN NaN NaN NaN 54.8 1 51.662 51.162 52.162 -3.1377 0 0 0 0.23508 1 10153 10153 7.609 3.0801 1 5980 3654 3634 3638 6330 6330 -0.001425710018565951 DEKTQLNL 8 Unmodified _DEKTQLNL_ 0 0 0 REV__SNRNP35|p.K148Rfs*6|2|0.33|ENSG00000184209|chr12:123465978-123465978|A/-|frameshift_variant REV__SNRNP35|p.K148Rfs*6|2|0.33|ENSG00000184209|chr12:123465978-123465978|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76861572265625 2 480.753464 959.492375 -0.16832 -8.0923E-05 0.43748 0.00021032 0.26915 0.0001294 480.75365601213696 95.357 0.75858 95.357 95.042 95.801 0 42 21 3 0 0 0 0.56049 1 18663 18663 24.674 1.5255 1 4516200 + 5981 18884 3635 3639 6331 6331 0.011008733095991374 DEKTQLNL 8 Unmodified _DEKTQLNL_ 0 0 0 REV__SNRNP35|p.K148Rfs*6|2|0.33|ENSG00000184209|chr12:123465978-123465978|A/-|frameshift_variant REV__SNRNP35|p.K148Rfs*6|2|0.33|ENSG00000184209|chr12:123465978-123465978|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77911376953125 2 480.753464 959.492375 0.26501 0.0001274 -0.047219 -2.2701E-05 0.21779 0.0001047 480.7534113028717 99.604 0.74317 95.335 94.963 95.706 -4.2692 48 21 3 0 0 0 0.56049 1 19065 19065 24.674 1.5255 1 6281400 + 5982 18884 3635 3639 6332 6332 0.011008733095991374 DEKTTKKI 8 Unmodified _DEKTTKKI_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77923583984375 2 481.779482 961.544411 NaN NaN NaN NaN NaN NaN NaN 59.686 1 56.753 56.253 57.253 -2.9333 0 0 0 0.22699 1 11479 11479 4.2837 3.6023 1 5983 528 3636 3640 6333 6333 0.06210036723382473 DEKVLIEAY 9 Unmodified _DEKVLIEAY_ 0 0 0 ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2 ENSG00000024048|ENST00000372901|UBR2 ENSG00000024048|ENST00000372901|UBR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2775268554688 2 540.284597 1078.55464 -0.25266 -0.00013651 0.48285 0.00026087 0.23019 0.00012437 540.2847342245312 107.46 0.83458 103.14 102.72 103.55 -4.32 65 23 4 0 0 0 0.045725 2 21124 21124;21178 72.968 36.924 1 19740000 5984 1135 3637 3641 6334;6335 6334 0.01850599657973362 DEKVLIEAY 9 Unmodified _DEKVLIEAY_ 0 0 0 ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2 ENSG00000024048|ENST00000372901|UBR2 ENSG00000024048|ENST00000372901|UBR2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.284597 1078.55464 0.65511 0.00035395 -0.38478 -0.00020789 0.27033 0.00014606 540.2843300826806 103.12 0.81852 103.12 102.76 103.58 0 -0.016865 -0.00025333 NaN 72.968 70 23 4 NaN NaN NaN NaN 0 NaN NaN 0 21574000 5985 1135 3637 3641 0.01850599657973362 DEKVLIEAY 9 Unmodified _DEKVLIEAY_ 0 0 0 ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2 ENSG00000024048|ENST00000372901|UBR2 ENSG00000024048|ENST00000372901|UBR2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.284597 1078.55464 0.049303 2.6638E-05 0.14203 7.6737E-05 0.19133 0.00010337 540.2846057124216 107.55 0.85738 103.14 102.76 103.61 -4.4121 0.0051054 0.00031592 NaN 72.968 74 24 4 NaN NaN NaN NaN 0 NaN NaN 0 21508000 5986 1135 3637 3641 0.01850599657973362 DEKVLIEAY 9 Unmodified _DEKVLIEAY_ 0 0 0 ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2 ENSG00000024048|ENST00000372901|UBR2 ENSG00000024048|ENST00000372901|UBR2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.284597 1078.55464 0.78362 0.00042338 -0.55644 -0.00030063 0.22719 0.00012275 540.2842170765769 107.28 0.95844 103.15 102.74 103.7 -4.135 0.010879 -0.00043882 NaN 72.968 82 27 4 NaN NaN NaN NaN 0 NaN NaN 0 21599000 5987 1135 3637 3641 0.01850599657973362 DEKVLRVFSAP 11 Unmodified _DEKVLRVFSAP_ 0 0 0 nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2 nc|ENSG00000134759|Q6IA86-2|ELP2 nc|ENSG00000134759|Q6IA86-2|ELP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7568359375 2 630.85097 1259.68739 NaN NaN NaN NaN NaN NaN NaN 106.57 1 106.57 106.07 107.07 0 0 0 0 0.22595 1 20950 20950 11.495 1.3441 1 5988 12336 3638 3642 6336 6336 0.06793044114624536 DEKWYPDEY 9 Unmodified _DEKWYPDEY_ 0 0 0 REV__ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant REV__ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7566528320312 2 622.758943 1243.50333 NaN NaN NaN NaN NaN NaN NaN 25.193 1 25.193 24.693 25.693 0 0 0 0 0.23508 1 4362 4362 10.824 4.1008 1 + 5989 25590 3639 3643 6337 6337 -0.10867769106744163 DEKWYPDEY 9 Unmodified _DEKWYPDEY_ 0 0 0 REV__ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant REV__ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7590942382812 2 622.758943 1243.50333 NaN NaN NaN NaN NaN NaN NaN 63.649 1 60.651 60.151 61.151 -2.9975 0 0 0 0.23508 1 12302 12302 4.756 0 1 + 5990 25590 3639 3643 6338 6338 -0.10867769106744163 DEKWYPDEY 9 Unmodified _DEKWYPDEY_ 0 0 0 REV__ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant REV__ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7576293945312 2 622.758943 1243.50333 NaN NaN NaN NaN NaN NaN NaN 112.57 1 108.05 107.55 108.55 -4.5259 0 0 0 0.23508 1 21608 21608 4.756 0 1 + 5991 25590 3639 3643 6339 6339 -0.10867769106744163 DEKWYPDEY 9 Unmodified _DEKWYPDEY_ 0 0 0 REV__ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant REV__ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7520141601562 2 622.758943 1243.50333 NaN NaN NaN NaN NaN NaN NaN 142.99 1 138.09 137.59 138.59 -4.8982 0 0 0 0.23508 1 27597 27597 4.756 0.42677 1 + 5992 25590 3639 3643 6340 6340 -0.10867769106744163 DELAEPKK 8 Unmodified _DELAEPKK_ 0 0 0 PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1;PLXND1|p.T1680M|1|0.32|ENSG00000004399|chr3:129560424-129560424|G/A|missense_variant PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25921630859375 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 83.274 1 79.4 78.9 79.9 -3.8736 0 0 0 0.21452 1 15816 15816 13.508 4.1248 1 5993 973 3640 3644 6341 6341 0.01945774797957256 DELAHLTELY 10 Unmodified _DELAHLTELY_ 0 0 0 REV__ENST00000544576.1_1_8:145297127-145303835:+|nuORF REV__ENST00000544576.1_1_8:145297127-145303835:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.29931640625 2 602.298236 1202.58192 NaN NaN NaN NaN NaN NaN NaN 63.991 1 60.993 60.493 61.493 -2.9975 0 0 0 0.22588 1 12370 12370 6.7232 0 1 + 5994 18669 3641 3645 6342 6342 -0.011269168016724507 DELAKELP 8 Unmodified _DELAKELP_ 0 0 0 tr|U7ST49|U7ST49_FUSNUProtein-exportmembraneproteinSecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secFPE=3SV=1 tr|U7ST49|U7ST49_FUSNUProtein-exportmembraneproteinSecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secFPE=3SV=1 tr|U7ST49|U7ST49_FUSNUProtein-exportmembraneproteinSecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secFPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2375183105469 2 457.745108 913.475663 0.43045 0.00019704 -0.20255 -9.2716E-05 0.2279 0.00010432 457.74495620288366 118.13 1.1421 113.72 112.96 114.1 -4.4088 55 31 2 0 0 0 8448 1 22763 22763 1.7423 1.1154 1 1818400 5995 26123 3642 3646 6343 6343 0.015463724236610688 DELALSLGY 9 Unmodified _DELALSLGY_ 0 0 0 ENSG00000172375|ENST00000648610|C2CD2L;nc|ENSG00000172375|O14523-2|C2CD2L;ENST00000525598.1_1_11:118984446-118985209:+|nuORF ENSG00000172375|ENST00000648610|C2CD2L ENSG00000172375|ENST00000648610|C2CD2L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2527770996094 2 490.75039 979.486227 0.49518 0.00024301 0.9425 0.00046253 1.4377 0.00070554 490.7532182478284 104.52 0.18007 100.47 100.31 100.49 -4.0543 6 4 2 0 0 0 0.79204 1 20100 20100 11.64 0 1 417760 5996 6215 3643 3647 6344 6344 -0.004336449219067617 DELASIQRY 9 Unmodified _DELASIQRY_ 0 0 0 REV__NDE1|p.L245Pfs*70|1|0.15|ENSG00000072864|chr16:15694188-15694189|-/C|frameshift_variant REV__NDE1|p.L245Pfs*70|1|0.15|ENSG00000072864|chr16:15694188-15694189|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7762451171875 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 37.79 1 35.442 34.942 35.942 -2.3479 0 0 0 0.17061 1 6705 6705 27.629 6.7576 1 + 5997 24344 3644 3648 6345 6345 -0.0026405277033063612 DELCGPDPSL 10 Unmodified _DELCGPDPSL_ 0 0 0 nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.L1398Sfs*26|1|0.18|ENSG00000076555|chr12:109233795-109233795|C/-|frameshift_variant;ACACB|p.T1476Hfs*7|1|0.28|ENSG00000076555|chr12:109235620-109235621|-/T|frameshift_variant nc|ENSG00000076555|O00763-3|ACACB nc|ENSG00000076555|O00763-3|ACACB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6915283203125 2 523.228965 1044.44338 0.21616 0.0001131 0.81027 0.00042396 1.0264 0.00053706 523.2294038806978 129.38 0.88271 124.64 124.19 125.07 -4.7408 55 24 3 0 0 0 0.42868 1 24887 24887 8.7518 7.537 1 6890200 5998 1540 3645 3649 6346 6346 -0.0770678304163539 DELEDQFSDY 10 Unmodified _DELEDQFSDY_ 0 0 0 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1;REV__ENSG00000172086|ENST00000347055|KRCC1 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7699584960938 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 112.33 1 108.06 107.56 108.56 -4.2725 0 0 0 0.22588 1 21628 21628 10.824 4.1008 1 + 5999 17848;18272 3646 3650 6347 6347 -0.13636984557206233 DELEHLEKK 9 Unmodified _DELEHLEKK_ 0 0 0 tr|U7T281|U7T281_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00582PE=4SV=1 tr|U7T281|U7T281_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00582PE=4SV=1 tr|U7T281|U7T281_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00582PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2198486328125 3 380.868027 1139.58225 -0.081189 -3.0922E-05 0.023298 8.8736E-06 -0.05789 -2.2049E-05 380.8678714062994 25.276 0.30976 25.276 25.081 25.391 0 12 8 2 0 0 0 0.85359 1 4360 4360 11.495 3.0504 1 578100 6000 26349 3647 3651 6348 6348 0.018045029181848804 DELEIKAY 8 Unmodified _DELEIKAY_ 0 0 0 ENST00000526904.5_1_1:1250884-1259984:-|nuORF;ENST00000526113.1_1_1:1250782-1259984:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11 ENST00000526904.5_1_1:1250884-1259984:-|nuORF ENST00000526904.5_1_1:1250884-1259984:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2764587402344 2 490.75039 979.486227 0.13352 6.5525E-05 0.17129 8.4063E-05 0.30481 0.00014959 490.7504082773703 86.461 1.0774 86.461 86.041 87.118 0 97 30 4 0 0 0 2.7292E-05 1 16875 16875 136.33 26.704 1 27549000 6001 3459 3648 3652 6349 6349 -0.004336449219181304 DELEIKAY 8 Unmodified _DELEIKAY_ 0 0 0 ENST00000526904.5_1_1:1250884-1259984:-|nuORF;ENST00000526113.1_1_1:1250782-1259984:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11 ENST00000526904.5_1_1:1250884-1259984:-|nuORF ENST00000526904.5_1_1:1250884-1259984:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2762756347656 2 490.75039 979.486227 0.0428 2.1004E-05 0.16197 7.9489E-05 0.20477 0.00010049 490.7504114002439 90.469 0.94714 86.61 86.08 87.028 -3.8595 85 26 4 0 0 0 0.11605 1 17744 17744 88.954 24.718 1 34497000 6002 3459 3648 3652 6350 6350 -0.004336449219181304 DELEIKAY 8 Unmodified _DELEIKAY_ 0 0 0 ENST00000526904.5_1_1:1250884-1259984:-|nuORF;ENST00000526113.1_1_1:1250782-1259984:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11 ENST00000526904.5_1_1:1250884-1259984:-|nuORF ENST00000526904.5_1_1:1250884-1259984:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27642822265625 2 490.75039 979.486227 0.42266 0.00020742 -0.18425 -9.0422E-05 0.2384 0.000117 490.75024056052655 90.611 1.0821 86.566 86.055 87.137 -4.0443 91 30 4 0 0 0 2.4387E-07 1 17265 17265 136.33 26.704 1 33239000 6003 3459 3648 3652 6351 6351 -0.004336449219181304 DELEIKAY 8 Unmodified _DELEIKAY_ 0 0 0 ENST00000526904.5_1_1:1250884-1259984:-|nuORF;ENST00000526113.1_1_1:1250782-1259984:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11 ENST00000526904.5_1_1:1250884-1259984:-|nuORF ENST00000526904.5_1_1:1250884-1259984:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2751159667969 2 490.75039 979.486227 -0.07296 -3.5805E-05 0.28196 0.00013837 0.209 0.00010257 490.7504624322363 90.367 1.0814 86.589 86.078 87.16 -3.7779 92 30 4 0 0 0 2.4387E-07 1 17309 17309 149.99 40.365 1 28675000 6004 3459 3648 3652 6352 6352 -0.004336449219181304 DELEKDKKWEF 11 Unmodified _DELEKDKKWEF_ 0 0 0 tr|U7T579|U7T579_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00475PE=4SV=1 tr|U7T579|U7T579_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00475PE=4SV=1 tr|U7T579|U7T579_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00475PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 489.60797119140625 3 489.576913 1465.70891 NaN NaN NaN NaN NaN NaN NaN 132.31 1 132.31 131.81 132.81 0 0 0 0 0.23698 1 26156 26156 1.3296 0 1 6005 26455 3649 3653 6353 6353 -0.005316156473327283 DELESIERRY 10 Unmodified _DELESIERRY_ 0 0 0 ZNF26|p.S105R|1|0.36|ENSG00000198393|chr12:133010194-133010194|C/A|missense_variant ZNF26|p.S105R|1|0.36|ENSG00000198393|chr12:133010194-133010194|C/A|missense_variant ZNF26|p.S105R|1|0.36|ENSG00000198393|chr12:133010194-133010194|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2164001464844 3 437.217608 1308.63099 NaN NaN NaN NaN NaN NaN NaN 88.894 1 85.143 84.643 85.643 -3.7501 0 0 0 0.22588 1 17019 17019 5.7834 1.9071 1 6006 26609 3650 3654 6354 6354 -0.010976285127071606 DELEVPCGL 9 Unmodified _DELEVPCGL_ 0 0 0 nc|ENSG00000156206|Q6P656-2|CFAP161;ENSG00000156206|ENST00000286732|CFAP161 nc|ENSG00000156206|Q6P656-2|CFAP161 nc|ENSG00000156206|Q6P656-2|CFAP161 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 487.2415466308594 2 487.7286 973.442648 0.20903 0.00010195 0.25414 0.00012395 0.46317 0.0002259 487.72842705244835 146.11 0.4502 141.42 141.12 141.57 -4.6868 21 12 2 0 0 0 0.46004 1 28972 28972 8.9129 6.2699 1 3675400 6007 5079 3651 3655 6355 6355 -0.04513577690681814 DELFGQTF 8 Unmodified _DELFGQTF_ 0 0 0 ZNF70|p.Q86R|1|0.29|ENSG00000187792|chr22:23744884-23744884|T/C|missense_variant;ENSG00000187792|ENST00000341976|ZNF70 ZNF70|p.Q86R|1|0.29|ENSG00000187792|chr22:23744884-23744884|T/C|missense_variant ZNF70|p.Q86R|1|0.29|ENSG00000187792|chr22:23744884-23744884|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72149658203125 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 152.75 1 147.98 147.48 148.48 -4.7684 0 0 0 0.2074 1 30352 30352 19.439 4.8573 1 6008 7128 3652 3656 6356 6356 -0.05078487127468634 DELFGQTF 8 Unmodified _DELFGQTF_ 0 0 0 ZNF70|p.Q86R|1|0.29|ENSG00000187792|chr22:23744884-23744884|T/C|missense_variant;ENSG00000187792|ENST00000341976|ZNF70 ZNF70|p.Q86R|1|0.29|ENSG00000187792|chr22:23744884-23744884|T/C|missense_variant ZNF70|p.Q86R|1|0.29|ENSG00000187792|chr22:23744884-23744884|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72125244140625 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 153 1 148.23 147.73 148.73 -4.7684 0 0 0 0.19492 1 30403 30403 26.341 8.1949 1 6009 7128 3652 3656 6357 6357 -0.05078487127468634 DELFGQTF 8 Unmodified _DELFGQTF_ 0 0 0 ZNF70|p.Q86R|1|0.29|ENSG00000187792|chr22:23744884-23744884|T/C|missense_variant;ENSG00000187792|ENST00000341976|ZNF70 ZNF70|p.Q86R|1|0.29|ENSG00000187792|chr22:23744884-23744884|T/C|missense_variant ZNF70|p.Q86R|1|0.29|ENSG00000187792|chr22:23744884-23744884|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7215576171875 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 153.3 1 148.08 147.58 148.58 -5.2209 0 0 0 0.21452 1 29712 29712 13.508 4.1604 1 6010 7128 3652 3656 6358 6358 -0.05078487127468634 DELHMVCF 8 Unmodified _DELHMVCF_ 0 0 0 REV__nc|ENSG00000217128|Q8TF40-3|FNIP1 REV__nc|ENSG00000217128|Q8TF40-3|FNIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 497.2847595214844 2 497.212063 992.409574 0.019453 9.6723E-06 1.0297 0.00051198 1.0492 0.00052166 497.2124778879924 145.67 1.307 140.56 140.14 141.45 -5.1108 89 37 3 0 0 0 0.87247 1 28088 28088 6.1918 6.1918 1 16304000 + 6011 19700 3653 3657 6359 6359 -0.08693483014383219 DELHMVCF 8 Unmodified _DELHMVCF_ 0 0 0 REV__nc|ENSG00000217128|Q8TF40-3|FNIP1 REV__nc|ENSG00000217128|Q8TF40-3|FNIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 497.24652099609375 2 497.212063 992.409574 0.13468 6.6967E-05 0.94924 0.00047197 1.0839 0.00053894 497.2125033449665 145.51 1.0107 140.56 140.17 141.18 -4.9445 59 28 3 0 0 0 0.88214 1 28051 28051 3.5871 3.5871 1 8297300 + 6012 19700 3653 3657 6360 6360 -0.08693483014383219 DELHMVCF 8 Unmodified _DELHMVCF_ 0 0 0 REV__nc|ENSG00000217128|Q8TF40-3|FNIP1 REV__nc|ENSG00000217128|Q8TF40-3|FNIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 497.212063 992.409574 0.19541 9.7158E-05 1.0924 0.00054316 1.2878 0.00064032 497.21241027916363 140.38 0.76791 140.38 139.95 140.72 0 -0.16402 0.00012858 NaN 6.1918 41 21 2 NaN NaN NaN NaN 0 NaN NaN 0 9262400 + 6013 19700 3653 3657 -0.08693483014383219 DELHMVCF 8 Unmodified _DELHMVCF_ 0 0 0 REV__nc|ENSG00000217128|Q8TF40-3|FNIP1 REV__nc|ENSG00000217128|Q8TF40-3|FNIP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 497.212063 992.409574 0.11003 5.4709E-05 0.84521 0.00042025 0.95524 0.00047496 497.2124208636271 145.35 1.0124 140.68 140.27 141.28 -4.6694 0.13572 -0.00011725 NaN 6.1918 67 28 3 NaN NaN NaN NaN 0 NaN NaN 0 10582000 + 6014 19700 3653 3657 -0.08693483014383219 DELHTEPEWTD 11 Unmodified _DELHTEPEWTD_ 0 0 0 REV__ENST00000538078.1_1_12:7592002-7592584:-|nuORF REV__ENST00000538078.1_1_12:7592002-7592584:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2381896972656 3 457.86149 1370.56264 NaN NaN NaN NaN NaN NaN NaN 123.42 1 118.83 118.33 119.33 -4.5926 0 0 0 0.23452 1 23761 23761 4.7159 0 1 + 6015 22837 3654 3658 6361 6361 -0.10781917883241476 DELHTRFY 8 Unmodified _DELHTRFY_ 0 0 0 REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant REV__DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26025390625 2 540.759081 1079.50361 0.25471 0.00013774 4.1836 0.0022623 4.4383 0.0024001 541.2614424751879 87.939 0.62866 84.188 83.872 84.5 -3.7501 39 17 3 0 0 0 0.68128 1 16799 16799 16.942 1.0951 1 4470600 + 6016 13715 3655 3659 6362 6362 -0.032963045962333126 DELHYLEVY 9 Unmodified _DELHYLEVY_ 0 0 0 ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENSG00000069329|ENST00000299138|VPS35;ENST00000569950.1_1_16:46710493-46715410:-|nuORF ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENST00000568784.6_1_16:46694386-46722246:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2526245117188 2 590.779679 1179.5448 0.35043 0.00020702 0.5928 0.00035021 0.94322 0.00055724 590.7800890261143 138.65 0.62958 138.65 138.32 138.95 0 28 17 2 0 0 0 0.71527 1 27572 27572 25.399 7.2643 1 8128900 6017 1416 3656 3660 6363 6363 -0.03778588347427103 DELHYLEVY 9 Unmodified _DELHYLEVY_ 0 0 0 ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENSG00000069329|ENST00000299138|VPS35;ENST00000569950.1_1_16:46710493-46715410:-|nuORF ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENST00000568784.6_1_16:46694386-46722246:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2640991210938 2 590.779679 1179.5448 0.55088 0.00032545 -0.43082 -0.00025452 0.12006 7.0927E-05 591.2809788817235 143.66 0.5531 139.01 138.79 139.34 -4.656 22 15 2 0 0 0 0.71527 1 28409 28409 25.399 11.493 1 6358800 6018 1416 3656 3660 6364 6364 -0.03778588347427103 DELHYLEVY 9 Unmodified _DELHYLEVY_ 0 0 0 ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENSG00000069329|ENST00000299138|VPS35;ENST00000569950.1_1_16:46710493-46715410:-|nuORF ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENST00000568784.6_1_16:46694386-46722246:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2626342773438 2 590.779679 1179.5448 0.51213 0.00030255 -0.5978 -0.00035317 -0.085676 -5.0616E-05 590.779253317516 144.1 0.65491 139.04 138.77 139.42 -5.0671 27 18 2 0 0 0 0.58699 1 27764 27764 25.399 11.493 1 6945900 6019 1416 3656 3660 6365 6365 -0.03778588347427103 DELHYLEVY 9 Unmodified _DELHYLEVY_ 0 0 0 ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENSG00000069329|ENST00000299138|VPS35;ENST00000569950.1_1_16:46710493-46715410:-|nuORF ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENST00000568784.6_1_16:46694386-46722246:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2597045898438 2 590.779679 1179.5448 0.30831 0.00018214 0.18477 0.00010916 0.49308 0.0002913 590.7797839256187 143.87 0.60089 138.94 138.66 139.26 -4.9268 28 16 2 0 0 0 0.42289 1 27797 27797 32.305 13.049 1 5545700 6020 1416 3656 3660 6366 6366 -0.03778588347427103 DELIIEKNI 9 Unmodified _DELIIEKNI_ 0 0 0 tr|U7SYY7|U7SYY7_FUSNUGTPcyclohydrolase1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=folEPE=3SV=1 tr|U7SYY7|U7SYY7_FUSNUGTPcyclohydrolase1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=folEPE=3SV=1 tr|U7SYY7|U7SYY7_FUSNUGTPcyclohydrolase1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=folEPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7769775390625 2 543.805697 1085.59684 0.095312 5.1831E-05 1.2886 0.00070073 1.3839 0.00075256 543.8062486616245 139.75 0.56087 134.8 134.46 135.02 -4.952 24 15 2 0 0 0 0.41081 1 26818 26818 2.6312 0 1 1961000 6021 26289 3657 3661 6367 6367 0.05746575066336845 DELIQPQL 8 Unmodified _DELIQPQL_ 0 0 0 ENSG00000135931|ENST00000611582|ARMC9;nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENST00000486787.1_1_2:232160870-232209803:+|nuORF ENSG00000135931|ENST00000611582|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7293701171875 2 478.258382 954.502212 0.24731 0.00011828 0.054652 2.6138E-05 0.30196 0.00014442 478.2582765288923 124.6 0.67231 119.95 119.68 120.35 -4.6495 27 18 2 0 0 0 0.69702 1 24029 24029 6.3914 6.126 1 1043200 6022 3968 3658 3662 6368 6368 0.023140613149848832 DELKIKYRQSY 11 Unmodified _DELKIKYRQSY_ 0 0 0 ENST00000470811.5_1_3:156544101-156697065:+|nuORF;ENSG00000197980|ENST00000356539|LEKR1;ENST00000489350.5_1_3:156638427-156660333:+|nuORF;ENST00000467376.5_1_3:156547149-156638484:+|nuORF;nc|ENSG00000197980|Q6ZMV7|LEKR1 ENST00000470811.5_1_3:156544101-156697065:+|nuORF ENST00000470811.5_1_3:156544101-156697065:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77728271484375 3 481.592786 1441.75653 NaN NaN NaN NaN NaN NaN NaN 63.102 1 59.845 59.345 60.345 -3.2567 0 0 0 0.22632 1 11840 11840 0.2986 0.26719 1 6023 7418 3659 3663 6369 6369 0.053320833435236636 DELKIVAS 8 Unmodified _DELKIVAS_ 0 0 0 tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1 tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1 tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2362976074219 2 437.74765 873.480748 -0.053861 -2.3578E-05 -0.04472 -1.9576E-05 -0.098581 -4.3154E-05 437.7475867577787 70.113 0.60214 70.113 69.742 70.344 0 34 16 3 0 0 0 0.25047 1 13576 13576 69.105 17.475 1 2730600 6024 26106 3660 3664 6370 6370 0.03894676286279264 DELKIVAS 8 Unmodified _DELKIVAS_ 0 0 0 tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1 tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1 tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2162780761719 2 437.74765 873.480748 -0.2384 -0.00010436 0.14994 6.5634E-05 -0.088468 -3.8727E-05 437.7476815445408 73.19 0.68221 69.879 69.562 70.244 -3.3107 41 18 3 0 0 0 0.98537 1 14332 14332 12.241 1.4167 1 5366300 6025 26106 3660 3664 6371 6371 0.03894676286279264 DELKIVAS 8 Unmodified _DELKIVAS_ 0 0 0 tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1 tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1 tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2164001464844 2 437.74765 873.480748 0.20157 8.8236E-05 -0.19357 -8.4736E-05 0.007995 3.4998E-06 437.74752869193105 73.503 0.70256 69.909 69.589 70.292 -3.594 35 19 2 0 0 0 0.35245 1 13947 13947 49.933 2.1843 1 3808200 6026 26106 3660 3664 6372 6372 0.03894676286279264 DELKLASHS 9 Unmodified _DELKLASHS_ 0 0 0 REV__MS4A14|p.P357Lfs*19|1|0.1|ENSG00000166928|chr11:60416034-60416034|C/-|frameshift_variant REV__MS4A14|p.P357Lfs*19|1|0.1|ENSG00000166928|chr11:60416034-60416034|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.5065612792969 3 333.841701 998.503274 -0.43894 -0.00014654 0.86978 0.00029037 0.43084 0.00014383 333.84191499135665 34.53 0.58807 32.212 31.876 32.464 -2.3175 39 16 3 0 0 0 0.24122 1 6317 6317 24.882 13.983 1 5821500 + 6027 17892 3661 3665 6373 6373 0.0039627568389732915 DELKLASHS 9 Unmodified _DELKLASHS_ 0 0 0 REV__MS4A14|p.P357Lfs*19|1|0.1|ENSG00000166928|chr11:60416034-60416034|C/-|frameshift_variant REV__MS4A14|p.P357Lfs*19|1|0.1|ENSG00000166928|chr11:60416034-60416034|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 333.841701 998.503274 -0.40364 -0.00013475 0.64901 0.00021667 0.24537 8.1915E-05 333.84190598883754 32.413 0.55974 32.413 32.082 32.642 0 0.12961 5.0795E-05 NaN 24.882 42 15 4 NaN NaN NaN NaN 0 NaN NaN 0 4908600 + 6028 17892 3661 3665 0.0039627568389732915 DELKLASHS 9 Unmodified _DELKLASHS_ 0 0 0 REV__MS4A14|p.P357Lfs*19|1|0.1|ENSG00000166928|chr11:60416034-60416034|C/-|frameshift_variant REV__MS4A14|p.P357Lfs*19|1|0.1|ENSG00000166928|chr11:60416034-60416034|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 333.841701 998.503274 0.19333 6.4543E-05 0.22331 7.4549E-05 0.41664 0.00013909 333.8417345893242 34.489 0.80337 32.236 31.802 32.606 -2.2527 -0.047076 -0.00037556 NaN 24.882 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 5142700 + 6029 17892 3661 3665 0.0039627568389732915 DELKLASHS 9 Unmodified _DELKLASHS_ 0 0 0 REV__MS4A14|p.P357Lfs*19|1|0.1|ENSG00000166928|chr11:60416034-60416034|C/-|frameshift_variant REV__MS4A14|p.P357Lfs*19|1|0.1|ENSG00000166928|chr11:60416034-60416034|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 333.841701 998.503274 -0.32637 -0.00010895 0.60626 0.00020239 0.27989 9.3439E-05 333.84189869990416 34.487 0.59668 32.271 31.984 32.581 -2.2158 -0.011745 7.9737E-06 NaN 24.882 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4837700 + 6030 17892 3661 3665 0.0039627568389732915 DELKLKQL 8 Unmodified _DELKLKQL_ 0 0 0 ENSG00000151422|ENST00000281092|FER;FER|p.K652R|1|0.05|ENSG00000151422|chr5:109100426-109100426|A/G|missense_variant;nc|ENSG00000151422|P16591-3|FER;nc|ENSG00000151422|P16591-2|FER ENSG00000151422|ENST00000281092|FER ENSG00000151422|ENST00000281092|FER MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 494.2386474609375 2 493.797675 985.580796 -0.040377 -1.9938E-05 0.32861 0.00016227 0.28823 0.00014233 493.79777564231233 79.041 0.63398 75.236 74.876 75.51 -3.8048 34 17 3 0 0 0 0.83238 1 14952 14952 20.454 5.6154 1 3284500 6031 4866 3662 3666 6374 6374 0.08742913620085346 DELKLKQL 8 Unmodified _DELKLKQL_ 0 0 0 ENSG00000151422|ENST00000281092|FER;FER|p.K652R|1|0.05|ENSG00000151422|chr5:109100426-109100426|A/G|missense_variant;nc|ENSG00000151422|P16591-3|FER;nc|ENSG00000151422|P16591-2|FER ENSG00000151422|ENST00000281092|FER ENSG00000151422|ENST00000281092|FER MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 493.797675 985.580796 0.36258 0.00017904 -0.26202 -0.00012938 0.10056 4.9658E-05 493.79751122226094 75.472 0.44061 75.472 75.24 75.681 0 0.18729 -0.00039248 NaN 20.454 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4534000 6032 4866 3662 3666 0.08742913620085346 DELKLKQL 8 Unmodified _DELKLKQL_ 0 0 0 ENSG00000151422|ENST00000281092|FER;FER|p.K652R|1|0.05|ENSG00000151422|chr5:109100426-109100426|A/G|missense_variant;nc|ENSG00000151422|P16591-3|FER;nc|ENSG00000151422|P16591-2|FER ENSG00000151422|ENST00000281092|FER ENSG00000151422|ENST00000281092|FER MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 493.797675 985.580796 0.089518 4.4204E-05 0.086344 4.2636E-05 0.17586 8.684E-05 493.7976804139134 78.65 0.57259 75.187 74.818 75.391 -3.4633 -0.098165 -4.8439E-05 NaN 20.454 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3445200 6033 4866 3662 3666 0.08742913620085346 DELKLKQL 8 Unmodified _DELKLKQL_ 0 0 0 ENSG00000151422|ENST00000281092|FER;FER|p.K652R|1|0.05|ENSG00000151422|chr5:109100426-109100426|A/G|missense_variant;nc|ENSG00000151422|P16591-3|FER;nc|ENSG00000151422|P16591-2|FER ENSG00000151422|ENST00000281092|FER ENSG00000151422|ENST00000281092|FER MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 493.797675 985.580796 -0.24927 -0.00012309 0.43772 0.00021615 0.18845 9.3055E-05 493.79787240737164 78.92 0.55154 75.244 74.96 75.512 -3.676 -0.040861 0.00029858 NaN 20.454 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3196600 6034 4866 3662 3666 0.08742913620085346 DELKLQAG 8 Unmodified _DELKLQAG_ 0 0 0 ENSG00000214193|ENST00000453908|SH3D21;SH3D21|p.H471Tfs*31|1|0.4|ENSG00000214193|chr1:36320403-36320403|C/-|frameshift_variant ENSG00000214193|ENST00000453908|SH3D21 ENSG00000214193|ENST00000453908|SH3D21 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23602294921875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 69.863 1 69.863 69.363 70.363 0 0 0 0 0.20896 1 13526 13526 18.135 1.9859 1 6035 7722 3663 3667 6375 6375 0.019015056264720442 DELKLQAG 8 Unmodified _DELKLQAG_ 0 0 0 ENSG00000214193|ENST00000453908|SH3D21;SH3D21|p.H471Tfs*31|1|0.4|ENSG00000214193|chr1:36320403-36320403|C/-|frameshift_variant ENSG00000214193|ENST00000453908|SH3D21 ENSG00000214193|ENST00000453908|SH3D21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22802734375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 73.539 1 69.945 69.445 70.445 -3.594 0 0 0 0.22692 1 13960 13960 11.999 0 1 6036 7722 3663 3667 6376 6376 0.019015056264720442 DELKLQAG 8 Unmodified _DELKLQAG_ 0 0 0 ENSG00000214193|ENST00000453908|SH3D21;SH3D21|p.H471Tfs*31|1|0.4|ENSG00000214193|chr1:36320403-36320403|C/-|frameshift_variant ENSG00000214193|ENST00000453908|SH3D21 ENSG00000214193|ENST00000453908|SH3D21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23590087890625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 73.621 1 70.027 69.527 70.527 -3.594 0 0 0 0.20462 1 13974 13974 21.747 2.3076 1 6037 7722 3663 3667 6377 6377 0.019015056264720442 DELKRYEE 8 Unmodified _DELKRYEE_ 0 0 0 REV__tr|U7T237|U7T237_FUSNURibonucleaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00457PE=4SV=1 REV__tr|U7T237|U7T237_FUSNURibonucleaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00457PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2619018554688 2 541.261653 1080.50875 0.21369 0.00011566 0.60458 0.00032723 0.81827 0.0004429 541.2622193787894 78.021 0.67569 74.557 74.181 74.857 -3.4633 44 16 4 0 0 0 0.25515 1 15232 15232 39.957 0 1 4150600 + 6038 25306 3664 3668 6378 6378 -0.028280455242793323 DELKVDKI 8 Unmodified _DELKVDKI_ 0 0 0 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;REV__SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2541198730469 2 480.274032 958.533512 -0.33275 -0.00015981 0.076883 3.6925E-05 -0.25586 -0.00012289 480.27402127897915 59.947 0.63255 59.947 59.648 60.28 0 37 17 3 0 0 0 0.16845 1 11495 11495 49.554 7.5987 1 6276500 6039 2750;15080 3665 3669 6379 6379 0.05258634349092972 DELKVDKI 8 Unmodified _DELKVDKI_ 0 0 0 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;REV__SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25457763671875 2 480.274032 958.533512 0.19634 9.4297E-05 -0.30546 -0.00014671 -0.10912 -5.241E-05 480.27381039311535 62.995 0.61877 59.738 59.436 60.055 -3.2567 44 17 3 0 0 0 0.072337 1 11813 11813 70.332 16.928 1 6222300 6040 2750;15080 3665 3669 6380 6380 0.05258634349092972 DELKVDKI 8 Unmodified _DELKVDKI_ 0 0 0 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;REV__SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.274032 958.533512 0.10035 4.8196E-05 -0.059457 -2.8556E-05 0.040894 1.964E-05 480.2739329180999 62.634 0.66431 59.672 59.323 59.987 -2.9614 -0.10196 8.3256E-05 NaN 70.332 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 7024700 6041 2750;15080 3665 3669 0.05258634349092972 DELKVIVK 8 Unmodified _DELKVIVK_ 0 0 0 REV__nc|ENSG00000150347|Q14865-3|ARID5B REV__nc|ENSG00000150347|Q14865-3|ARID5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.15570068359375 3 315.198937 942.574983 -0.71442 -0.00022519 0.76996 0.00024269 0.05554 1.7506E-05 315.1991083261305 84.321 0.84534 80.61 80.134 80.979 -3.7117 55 23 3 0 0 0 1.0158 1 16060 16060 3.2813 0 1 4054300 + 6042 17028 3666 3670 6381 6381 0.10139815108436778 DELKWKFI 8 Unmodified _DELKWKFI_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2012939453125 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 99.098 1 94.965 94.465 95.465 -4.1326 0 0 0 0.21486 1 19462 19462 3.2813 0.54611 1 6043 3540 3667 3671 6382 6382 0.05019217482708882 DELLASLSA 9 Unmodified _DELLASLSA_ 0 0 0 ENSG00000170807|ENST00000458573|LMOD2;nc|ENSG00000170807|Q6P5Q4-3|LMOD2;nc|ENSG00000170807|Q6P5Q4-2|LMOD2;LMOD2|p.P401Ifs*14|1|0.04|ENSG00000170807|chr7:123662786-123662787|-/ATATTTCTTGT|frameshift_variant;LMOD2|p.K405Qfs*119|1|0.49|ENSG00000170807|chr7:123662794-123662795|-/C|frameshift_variant ENSG00000170807|ENST00000458573|LMOD2 ENSG00000170807|ENST00000458573|LMOD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2446594238281 2 459.742565 917.470577 0.12095 5.5607E-05 0.53544 0.00024617 0.6564 0.00030177 459.7427337762283 122.51 0.73978 117.96 117.71 118.45 -4.5476 34 20 2 0 0 0 0.28246 1 24215 24215 1.6919 0 1 2193500 6044 6097 3668 3672 6383 6383 0.008540685610455512 DELLLTEM 8 Oxidation (M) _DELLLTEM(Oxidation (M))_ DELLLTEM(1) DELLLTEM(42) 0 0 1 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.253173828125 2 490.236258 978.457964 NaN NaN NaN NaN NaN NaN NaN 106.3 1 101.93 101.43 102.43 -4.3764 0 0 0 0.11793 1 20387 20387 42.095 9.9776 1 6045 1187 3669 3673 6384 6384 7 -0.03212710893478743 DELLVTEVY 9 Unmodified _DELLVTEVY_ 0 0 0 nc|ENSG00000101639|Q8TEP8-1|CEP192;CEP192|p.R2464Kfs*5|1|0.13|ENSG00000101639|chr18:13116476-13116477|-/AAATCCA|frameshift_variant;ENSG00000101639|ENST00000506447|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENST00000540847.6_1_18:13088862-13124766:+|nuORF nc|ENSG00000101639|Q8TEP8-1|CEP192 nc|ENSG00000101639|Q8TEP8-1|CEP192 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2781982421875 2 540.776605 1079.53866 0.22891 0.00012379 0.069127 3.7382E-05 0.29804 0.00016117 540.7767812948877 153.27 1.277 148 147.47 148.75 -5.2669 67 36 3 0 0 0 0.042631 4 29721 29630;29672;29721;29769 74.423 28.192 1 5526600 6046 491 3670 3674 6385;6386;6387;6388 6387 0.0020689342104560637 DELLVTEVY 9 Unmodified _DELLVTEVY_ 0 0 0 nc|ENSG00000101639|Q8TEP8-1|CEP192;CEP192|p.R2464Kfs*5|1|0.13|ENSG00000101639|chr18:13116476-13116477|-/AAATCCA|frameshift_variant;ENSG00000101639|ENST00000506447|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENST00000540847.6_1_18:13088862-13124766:+|nuORF nc|ENSG00000101639|Q8TEP8-1|CEP192 nc|ENSG00000101639|Q8TEP8-1|CEP192 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.278564453125 2 540.776605 1079.53866 0.46256 0.00025014 0.25067 0.00013556 0.71323 0.0003857 540.7768694907782 153.15 1.2956 147.93 147.57 148.87 -5.2209 71 36 3 0 0 0 0.029966 4 29671 29662;29671;29763;29774 81.613 37.206 1 4727400 6047 491 3670 3674 6389;6390;6391;6392 6390 0.0020689342104560637 DELNFDLD 8 Unmodified _DELNFDLD_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2718811035156 2 490.714005 979.413456 NaN NaN NaN NaN NaN NaN NaN 111.25 1 106.75 106.25 107.25 -4.4915 0 0 0 0.21486 1 21352 21352 11.64 2.2929 1 6048 2145 3671 3675 6393 6393 -0.07707398715319869 DELNHASL 8 Unmodified _DELNHASL_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.8918151855469 2 449.716882 897.41921 -0.27901 -0.00012547 1.3848 0.00062277 1.1058 0.0004973 449.71757283157365 51.494 0.51331 48.612 48.42 48.934 -2.8824 26 14 3 0 0 0 0.32245 1 9804 9804 15.478 0 1 2200300 6049 1994 3672 3676 6394 6394 -0.033602554129970486 DELNHASL 8 Unmodified _DELNHASL_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 449.716882 897.41921 0.51216 0.00023033 0.018079 8.1302E-06 0.53024 0.00023846 449.71683537359274 48.754 0.42695 48.754 48.488 48.915 0 0.06881 -0.00064148 NaN 15.478 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2015400 6050 1994 3672 3676 -0.033602554129970486 DELNHASL 8 Unmodified _DELNHASL_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.716882 897.41921 -0.0029017 -1.305E-06 1.8412 0.000828 1.8383 0.00082669 449.71774351006246 51.698 0.62521 48.653 48.333 48.958 -3.0453 -0.031715 0.00099826 NaN 15.478 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1544300 6051 1994 3672 3676 -0.033602554129970486 DELNHASL 8 Unmodified _DELNHASL_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 449.716882 897.41921 -0.13226 -5.9479E-05 1.8798 0.00084538 1.7476 0.0007859 449.7176469307729 51.772 0.55338 48.721 48.417 48.97 -3.0517 0.035901 0.001033 NaN 15.478 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1163700 6052 1994 3672 3676 -0.033602554129970486 DELPELTNL 9 Unmodified _DELPELTNL_ 0 0 0 REV__LTV1|p.T382Qfs*23|1|0.08|ENSG00000135521|chr6:143863110-143863110|A/-|frameshift_variant REV__LTV1|p.T382Qfs*23|1|0.08|ENSG00000135521|chr6:143863110-143863110|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2767333984375 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 147.76 1 142.7 142.2 143.2 -5.0595 0 0 0 0.22621 1 28610 28610 15.847 1.2655 1 + 6053 16275 3673 3677 6395 6395 -0.0013027723878167308 DELPIAKV 8 Unmodified _DELPIAKV_ 0 0 0 ENSG00000183475|ENST00000332783|ASB7 ENSG00000183475|ENST00000332783|ASB7 ENSG00000183475|ENST00000332783|ASB7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 443.2491760253906 2 442.758018 883.501483 0.45068 0.00019954 -1.0125 -0.0004483 -0.56184 -0.00024876 442.75784996533434 99.538 0.66655 99.538 99.195 99.862 0 26 18 2 0 0 0 8448 1 19518 19518 29.841 6.0508 1 1040000 6054 6848 3674 3678 6396 6396 0.05507266665949828 DELPIAKV 8 Unmodified _DELPIAKV_ 0 0 0 ENSG00000183475|ENST00000332783|ASB7 ENSG00000183475|ENST00000332783|ASB7 ENSG00000183475|ENST00000332783|ASB7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 442.758018 883.501483 -0.22557 -9.9872E-05 0.34503 0.00015276 0.11946 5.2891E-05 442.75808276320686 103.39 0.6769 99.204 98.841 99.518 -4.1861 -0.13117 0.00040108 NaN 29.841 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1851000 6055 6848 3674 3678 0.05507266665949828 DELPIAKV 8 Unmodified _DELPIAKV_ 0 0 0 ENSG00000183475|ENST00000332783|ASB7 ENSG00000183475|ENST00000332783|ASB7 ENSG00000183475|ENST00000332783|ASB7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 442.758018 883.501483 0.17994 7.9672E-05 -0.21969 -9.7271E-05 -0.03975 -1.7599E-05 442.75787536238903 103.64 0.656 99.291 98.929 99.585 -4.346 -0.044488 -9.8992E-05 NaN 29.841 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1613600 6056 6848 3674 3678 0.05507266665949828 DELPLLGACL 10 Unmodified _DELPLLGACL_ 0 0 0 nc|ENSG00000176510|Q8NH08|OR10AC1 nc|ENSG00000176510|Q8NH08|OR10AC1 nc|ENSG00000176510|Q8NH08|OR10AC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2698364257812 2 522.275718 1042.53688 NaN NaN NaN NaN NaN NaN NaN 148.42 1 148.42 147.92 148.92 0 0 0 0 0.22588 1 29704 29704 10.074 0.72649 1 6057 12480 3675 3679 6397 6397 0.017315611314415946 DELQKRREE 9 Unmodified _DELQKRREE_ 0 0 0 HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant;ENSG00000103657|ENST00000443617|HERC1;HERC1|p.V1879Lfs*26|1|0.37|ENSG00000103657|chr15:63694004-63694004|T/-|frameshift_variant;HERC1|p.M2237*|1|0.39|ENSG00000103657|chr15:63678206-63678206|T/-|frameshift_variant;HERC1|p.C2300Hfs*14|1|0.44|ENSG00000103657|chr15:63678017-63678018|AA/-|frameshift_variant HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2837524414062 2 601.809833 1201.60511 1.1439 0.00068839 -4.3475 -0.0026163 -3.2036 -0.001928 601.8065887972891 154.46 0.20392 149.69 149.57 149.77 -4.7791 7 5 2 0 0 0 0.69259 1 30704 30704 6.7232 0.51738 1 1645000 6058 2202 3676 3680 6398 6398 0.012375220356716454 DELQLLEEY 9 Unmodified _DELQLLEEY_ 0 0 0 REV__nc|ENSG00000141622|Q6ZSG1-2|ARK2C REV__nc|ENSG00000141622|Q6ZSG1-2|ARK2C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3206176757812 2 576.276969 1150.53938 NaN NaN NaN NaN NaN NaN NaN 142.75 1 137.73 137.23 138.23 -5.0261 0 0 0 0.23508 1 27518 27518 7.9102 0.62092 1 + 6059 16645 3677 3681 6399 6399 -0.029863119298852325 DELQQPLEL 9 Unmodified _DELQQPLEL_ 0 0 0 ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2 ENST00000556539.5_1_12:56737175-56743495:-|nuORF ENST00000556539.5_1_12:56737175-56743495:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.785400390625 2 542.779679 1083.5448 0.24893 0.00013511 -1.6871 -0.00091574 -1.4382 -0.00078063 542.7784969349219 137.6 0.80966 132.96 132.48 133.29 -4.6413 49 22 3 0 0 0 0.34411 1 27135 27135 29.082 9.8246 1 5297200 6060 6082 3678 3682 6400 6400 0.0063741165256487875 DELQQPLEL 9 Unmodified _DELQQPLEL_ 0 0 0 ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2 ENST00000556539.5_1_12:56737175-56743495:-|nuORF ENST00000556539.5_1_12:56737175-56743495:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7833251953125 2 542.779679 1083.5448 0.083916 4.5548E-05 -1.8477 -0.0010029 -1.7638 -0.00095734 542.778569588092 137.84 0.80342 132.92 132.55 133.35 -4.9216 48 22 3 0 0 0 0.41266 2 26503 26454;26503 24.991 4.5764 1 4998100 6061 6082 3678 3682 6401;6402 6402 0.0063741165256487875 DELQQPLEL 9 Unmodified _DELQQPLEL_ 0 0 0 ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2 ENST00000556539.5_1_12:56737175-56743495:-|nuORF ENST00000556539.5_1_12:56737175-56743495:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.779679 1083.5448 0.32929 0.00017873 -1.9867 -0.0010783 -1.6574 -0.0008996 542.7786119441838 137.76 1.0999 132.92 132.41 133.51 -4.84 -0.009546 -0.00018408 NaN 29.082 45 30 2 NaN NaN NaN NaN 0 NaN NaN 0 4193700 6062 6082 3678 3682 0.0063741165256487875 DELQSILNY 9 Unmodified _DELQSILNY_ 0 0 0 NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant;NBEA|p.N854Kfs*18|1|0.22|ENSG00000172915|chr13:35156110-35156111|-/A|frameshift_variant;NBEA|p.N1121Kfs*2|1|0.35|ENSG00000172915|chr13:35159525-35159526|-/A|frameshift_variant;NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant;nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7720947265625 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 160.56 1 160.56 160.06 161.06 0 0 0 0 0.11195 1 32240 32240 36.127 12.106 1 6063 6251 3679 3683 6403 6403 -0.01386874864465426 DELQSILNY 9 Unmodified _DELQSILNY_ 0 0 0 NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant;NBEA|p.N854Kfs*18|1|0.22|ENSG00000172915|chr13:35156110-35156111|-/A|frameshift_variant;NBEA|p.N1121Kfs*2|1|0.35|ENSG00000172915|chr13:35159525-35159526|-/A|frameshift_variant;NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant;nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7725830078125 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 164.58 1 159.79 159.29 160.29 -4.7898 0 0 0 0.1599 1 32897 32897 29.082 5.061 1 6064 6251 3679 3683 6404 6404 -0.01386874864465426 DELQSILNY 9 Unmodified _DELQSILNY_ 0 0 0 NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant;NBEA|p.N854Kfs*18|1|0.22|ENSG00000172915|chr13:35156110-35156111|-/A|frameshift_variant;NBEA|p.N1121Kfs*2|1|0.35|ENSG00000172915|chr13:35159525-35159526|-/A|frameshift_variant;NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant;nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7901611328125 2 547.771854 1093.52915 0.21851 0.00011969 -1.29 -0.00070665 -1.0715 -0.00058695 547.7719268629652 164.96 0.31927 159.98 159.79 160.11 -4.9834 10 8 2 0 0 0 0.40602 2 32198 32187;32198 25.399 6.1423 1 6260700 6065 6251 3679 3683 6405;6406 6406 -0.01386874864465426 DELQSILNY 9 Unmodified _DELQSILNY_ 0 0 0 NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant;NBEA|p.N854Kfs*18|1|0.22|ENSG00000172915|chr13:35156110-35156111|-/A|frameshift_variant;NBEA|p.N1121Kfs*2|1|0.35|ENSG00000172915|chr13:35159525-35159526|-/A|frameshift_variant;NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant;nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77197265625 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 164.87 1 159.8 159.3 160.3 -5.0648 0 0 0 0.1599 1 32182 32182 29.082 11.969 1 6066 6251 3679 3683 6407 6407 -0.01386874864465426 DELQYSFSY 9 Unmodified _DELQYSFSY_ 0 0 0 REV__ENSG00000187266|ENST00000222139|EPOR REV__ENSG00000187266|ENST00000222139|EPOR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3343505859375 2 576.248212 1150.48187 NaN NaN NaN NaN NaN NaN NaN 136.83 1 136.83 136.33 137.33 0 0 0 0 0.22193 1 27121 27121 17.113 0.1706 1 + 6067 19084 3680 3684 6408 6408 -0.08735154135456469 DELQYSFSY 9 Unmodified _DELQYSFSY_ 0 0 0 REV__ENSG00000187266|ENST00000222139|EPOR REV__ENSG00000187266|ENST00000222139|EPOR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3208618164062 2 576.248212 1150.48187 NaN NaN NaN NaN NaN NaN NaN 142.2 1 137.3 136.8 137.8 -4.8982 0 0 0 0.19162 1 27437 27437 10.899 6.183 1 + 6068 19084 3680 3684 6409 6409 -0.08735154135456469 DELRAKAL 8 Unmodified _DELRAKAL_ 0 0 0 nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.234619140625 2 458.266542 914.51853 0.34049 0.00015604 -0.46854 -0.00021472 -0.12805 -5.868E-05 458.2662763381039 37.727 0.34938 37.727 37.508 37.858 0 13 9 2 0 0 0 0.19921 1 6980 6980 45.7 5.7423 1 795430 6069 2904 3681 3685 6410 6410 0.05785187271760606 DELRAKAL 8 Unmodified _DELRAKAL_ 0 0 0 nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2193603515625 2 458.266542 914.51853 -0.34484 -0.00015803 0.15139 6.9375E-05 -0.19346 -8.8654E-05 458.2666327268999 40.112 0.35658 37.504 37.326 37.683 -2.6075 16 9 2 0 0 0 0.44257 1 7473 7473 49.933 20.851 1 839950 6070 2904 3681 3685 6411 6411 0.05785187271760606 DELRAKAL 8 Unmodified _DELRAKAL_ 0 0 0 nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.266542 914.51853 -0.053362 -2.4454E-05 -0.0081894 -3.7529E-06 -0.061551 -2.8207E-05 458.266556829741 40.165 0.28043 37.625 37.394 37.675 -2.5398 0.026327 9.2957E-05 NaN 45.7 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 636000 6071 2904 3681 3685 0.05785187271760606 DELRAKAL 8 Unmodified _DELRAKAL_ 0 0 0 nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 458.266542 914.51853 0.10813 4.9554E-05 -0.1449 -6.6404E-05 -0.036767 -1.6849E-05 458.2664535942687 40.028 0.27983 37.538 37.37 37.649 -2.4896 -0.060474 -3.2344E-05 NaN 45.7 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 875930 6072 2904 3681 3685 0.05785187271760606 DELRAVMF 8 Unmodified _DELRAVMF_ 0 0 0 MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant;nc|ENSG00000129680|Q8IWC1-3|MAP7D3;nc|ENSG00000129680|Q8IWC1-4|MAP7D3;ENSG00000129680|ENST00000316077|MAP7D3 MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2579650878906 2 490.747127 979.479702 0.1441 7.0718E-05 -0.46174 -0.0002266 -0.31764 -0.00015588 490.74683993249363 136.81 0.59592 131.88 131.6 132.19 -4.9216 29 16 2 0 0 0 0.44257 1 26309 26309 34.402 17.459 1 5256200 6073 3572 3682 3686 6412 6412 -0.010858613542609419 DELRAVMF 8 Unmodified _DELRAVMF_ 0 0 0 MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant;nc|ENSG00000129680|Q8IWC1-3|MAP7D3;nc|ENSG00000129680|Q8IWC1-4|MAP7D3;ENSG00000129680|ENST00000316077|MAP7D3 MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2559509277344 2 490.747127 979.479702 -0.0043174 -2.1188E-06 0.16006 7.8551E-05 0.15575 7.6433E-05 490.74711893641535 136.79 0.76332 131.96 131.52 132.29 -4.8307 31 21 2 0 0 0 0.55701 1 26371 26371 41.84 33.246 1 6033300 6074 3572 3682 3686 6413 6413 -0.010858613542609419 DELRAVMF 8 Unmodified _DELRAVMF_ 0 0 0 MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant;nc|ENSG00000129680|Q8IWC1-3|MAP7D3;nc|ENSG00000129680|Q8IWC1-4|MAP7D3;ENSG00000129680|ENST00000316077|MAP7D3 MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 490.747127 979.479702 0.18867 9.2588E-05 -0.28018 -0.0001375 -0.091514 -4.491E-05 490.7469083692766 132.04 0.65866 132.04 131.64 132.3 0 0.081817 -9.3823E-05 NaN 34.402 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3514900 6075 3572 3682 3686 -0.010858613542609419 DELRKYGY 8 Unmodified _DELRKYGY_ 0 0 0 tr|U7T561|U7T561_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00450PE=4SV=1 tr|U7T561|U7T561_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00450PE=4SV=1 tr|U7T561|U7T561_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00450PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.260498046875 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 69.648 1 66.469 65.969 66.969 -3.1796 0 0 0 0.21486 1 13543 13543 12.532 1.7076 1 6076 26452 3683 3687 6414 6414 -0.011194204534604069 DELRRIEL 8 Unmodified _DELRRIEL_ 0 0 0 REV__nc|ENSG00000141956|P57071|PRDM15 REV__nc|ENSG00000141956|P57071|PRDM15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.277587890625 2 522.29583 1042.57711 NaN NaN NaN NaN NaN NaN NaN 148.53 1 148.53 148.03 149.03 0 0 0 0 0.21486 1 29726 29726 12.532 0 1 + 6077 24076 3684 3688 6415 6415 0.057522438462456194 DELRTLDSV 9 Unmodified _DELRTLDSV_ 0 0 0 KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant;KIF20B|p.R1552Gfs*9|1|0.39|ENSG00000138182|chr10:89758852-89758852|A/-|frameshift_variant;nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.693603515625 2 524.269478 1046.5244 -0.16808 -8.8121E-05 0.29809 0.00015628 0.13 6.8157E-05 524.2696857653143 91.13 0.47942 87.035 86.846 87.325 -4.0946 14 13 2 0 0 0 0.77644 1 17371 17371 15.248 6.5031 1 825160 6078 4160 3685 3689 6416 6416 0.0030024099276033667 DELRTLDSV 9 Unmodified _DELRTLDSV_ 0 0 0 KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant;KIF20B|p.R1552Gfs*9|1|0.39|ENSG00000138182|chr10:89758852-89758852|A/-|frameshift_variant;nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.269478 1046.5244 0.19318 0.00010128 0.70882 0.00037161 0.902 0.00047289 524.2697134215607 91.008 0.44702 87.199 86.961 87.408 -3.8083 0.082151 0.00030497 NaN 15.248 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 455880 6079 4160 3685 3689 0.0030024099276033667 DELRVNQL 8 Unmodified _DELRVNQL_ 0 0 0 ENSG00000253710|ENST00000521508|ALG11 ENSG00000253710|ENST00000521508|ALG11 ENSG00000253710|ENST00000521508|ALG11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 494.7582092285156 2 493.766906 985.519259 0.13919 6.8726E-05 0.51128 0.00025245 0.65047 0.00032118 493.76710010804976 83.829 1.0966 79.919 79.36 80.457 -3.9093 80 30 4 0 0 0 8448 1 15886 15886 35.996 14.196 1 29201000 6080 7916 3686 3690 6417 6417 0.025919819208070294 DELRVNQL 8 Unmodified _DELRVNQL_ 0 0 0 ENSG00000253710|ENST00000521508|ALG11 ENSG00000253710|ENST00000521508|ALG11 ENSG00000253710|ENST00000521508|ALG11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 493.766906 985.519259 0.60362 0.00029805 -0.25578 -0.00012629 0.34784 0.00017175 493.76671405731844 80.053 1.01 80.053 79.582 80.591 0 0.09921 -0.00065387 NaN 35.996 93 28 4 NaN NaN NaN NaN 0 NaN NaN 0 35594000 6081 7916 3686 3690 0.025919819208070294 DELRVNQL 8 Unmodified _DELRVNQL_ 0 0 0 ENSG00000253710|ENST00000521508|ALG11 ENSG00000253710|ENST00000521508|ALG11 ENSG00000253710|ENST00000521508|ALG11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 493.766906 985.519259 0.056011 2.7656E-05 0.41044 0.00020266 0.46645 0.00023032 493.76706670411636 83.458 1.0173 79.85 79.339 80.356 -3.6079 -0.10333 4.0354E-06 NaN 35.996 91 28 4 NaN NaN NaN NaN 0 NaN NaN 0 37459000 6082 7916 3686 3690 0.025919819208070294 DELRVNQL 8 Unmodified _DELRVNQL_ 0 0 0 ENSG00000253710|ENST00000521508|ALG11 ENSG00000253710|ENST00000521508|ALG11 ENSG00000253710|ENST00000521508|ALG11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 493.766906 985.519259 -0.27039 -0.00013351 0.90269 0.00044572 0.63231 0.00031221 493.7673014057174 83.69 0.97998 79.992 79.487 80.467 -3.6985 0.038104 0.00049015 NaN 35.996 90 27 4 NaN NaN NaN NaN 0 NaN NaN 0 35383000 6083 7916 3686 3690 0.025919819208070294 DELSDVIDIKD 11 Unmodified _DELSDVIDIKD_ 0 0 0 nc|ENSG00000144736|Q6PI26-2|SHQ1;ENSG00000144736|ENST00000325599|SHQ1 nc|ENSG00000144736|Q6PI26-2|SHQ1 nc|ENSG00000144736|Q6PI26-2|SHQ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.749267578125 2 631.31154 1260.60853 0.285 0.00017992 -0.56789 -0.00035852 -0.28289 -0.00017859 631.3109072712411 88.812 0.66488 88.812 88.542 89.206 0 29 18 2 0 0 0 0.76241 1 17282 17282 29.082 0 1 3077900 6084 4574 3687 3691 6418 6418 -0.011352727010034869 DELSDVIDIKD 11 Unmodified _DELSDVIDIKD_ 0 0 0 nc|ENSG00000144736|Q6PI26-2|SHQ1;ENSG00000144736|ENST00000325599|SHQ1 nc|ENSG00000144736|Q6PI26-2|SHQ1 nc|ENSG00000144736|Q6PI26-2|SHQ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7506103515625 2 631.31154 1260.60853 0.49503 0.00031252 -1.4757 -0.0009316 -0.98063 -0.00061909 631.3107224318358 92.729 0.6628 88.586 88.246 88.909 -4.1435 34 18 3 0 0 0 0.76241 1 17689 17689 29.082 0 1 2209500 6085 4574 3687 3691 6419 6419 -0.011352727010034869 DELSDVIDIKD 11 Unmodified _DELSDVIDIKD_ 0 0 0 nc|ENSG00000144736|Q6PI26-2|SHQ1;ENSG00000144736|ENST00000325599|SHQ1 nc|ENSG00000144736|Q6PI26-2|SHQ1 nc|ENSG00000144736|Q6PI26-2|SHQ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7495727539062 2 631.31154 1260.60853 0.33113 0.00020905 -1.2883 -0.00081334 -0.9572 -0.00060429 631.3107845970293 92.51 0.74077 88.702 88.312 89.053 -3.8083 40 21 3 0 0 0 0.76241 1 17784 17784 29.082 0 1 3233300 6086 4574 3687 3691 6420 6420 -0.011352727010034869 DELSGKGY 8 Unmodified _DELSGKGY_ 0 0 0 ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 ENSG00000144747|ENST00000398559|TMF1 ENSG00000144747|ENST00000398559|TMF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.9116516113281 2 434.705983 867.397412 -0.085882 -3.7333E-05 -0.16949 -7.3679E-05 -0.25537 -0.00011101 434.7058406670507 33.141 0.45164 30.824 30.627 31.079 -2.3175 15 12 2 0 0 0 0.99494 1 6070 6070 8.5933 7.9029 1 429030 6087 4578 3688 3692 6421 6421 -0.04159060161555317 DELSHFTI 8 Unmodified _DELSHFTI_ 0 0 0 REV__tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1 REV__tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2341613769531 2 481.234907 960.455261 0.10439 5.0237E-05 0.7939 0.00038205 0.89829 0.00043229 481.2352922821062 90.193 0.66703 86.415 86.044 86.711 -3.7779 24 18 2 0 0 0 0.69887 1 17211 17211 14.582 0 1 972440 + 6088 24962 3689 3693 6422 6422 -0.026547982361194045 DELSKKEI 8 Unmodified _DELSKKEI_ 0 0 0 REV__nc|ENSG00000129422|Q9ULD2-2|MTUS1 REV__nc|ENSG00000129422|Q9ULD2-2|MTUS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25396728515625 2 481.263665 960.512776 NaN NaN NaN NaN NaN NaN NaN 66.803 1 63.476 62.976 63.976 -3.3268 0 0 0 0.21323 1 12584 12584 14.582 2.0501 1 + 6089 15961 3690 3694 6423 6423 0.030940439694290944 DELSLPEGP 9 Unmodified _DELSLPEGP_ 0 0 0 nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62;ENST00000587391.5_1_19:36592854-36593151:+|nuORF nc|ENSG00000075702|O43379|WDR62 nc|ENSG00000075702|O43379|WDR62 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7306213378906 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 98.849 1 94.892 94.392 95.392 -3.9564 0 0 0 0.19679 1 18974 18974 1.2148 0 1 6090 1525 3691 3695 6424 6424 -0.029665218185982667 DELSLRAL 8 Unmodified _DELSLRAL_ 0 0 0 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2374267578125 2 458.758549 915.502546 0.24045 0.00011031 -0.1211 -5.5556E-05 0.11934 5.475E-05 458.7584997358072 119.05 0.66081 119.05 118.71 119.37 0 41 18 3 0 0 0 0.31943 1 23448 23448 45.7 5.7499 1 5540500 6091 4189 3692 3696 6425 6425 0.04141481034866956 DELSLRAL 8 Unmodified _DELSLRAL_ 0 0 0 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2376708984375 2 458.758549 915.502546 0.094555 4.3378E-05 -0.0038603 -1.7709E-06 0.090695 4.1607E-05 458.7585470728874 123.39 0.64273 118.81 118.49 119.13 -4.5757 40 17 3 0 0 0 0.28309 1 24356 24356 39.95 1.9757 1 4456400 6092 4189 3692 3696 6426 6426 0.04141481034866956 DELSLRAL 8 Unmodified _DELSLRAL_ 0 0 0 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2381896972656 2 458.758549 915.502546 0.27092 0.00012429 -0.097834 -4.4882E-05 0.17308 7.9404E-05 458.75855807943697 123.5 0.84837 118.91 118.48 119.33 -4.5926 53 24 3 0 0 0 0.03854 1 23761 23761 99.799 17.909 1 5336700 6093 4189 3692 3696 6427 6427 0.04141481034866956 DELSLRAL 8 Unmodified _DELSLRAL_ 0 0 0 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.758549 915.502546 0.3938 0.00018066 -0.25318 -0.00011615 0.14062 6.4511E-05 458.7584529312063 123.62 0.6759 118.89 118.54 119.21 -4.731 -0.026226 -0.00012982 NaN 99.799 41 18 4 NaN NaN NaN NaN 0 NaN NaN 0 4081400 6094 4189 3692 3696 0.04141481034866956 DELSLTQLY 9 Unmodified _DELSLTQLY_ 0 0 0 REV__CNKSR2|p.P788S|1|0.54|ENSG00000149970|chrX:21609287-21609287|C/T|missense_variant REV__CNKSR2|p.P788S|1|0.54|ENSG00000149970|chrX:21609287-21609287|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2748413085938 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 113.71 1 109.25 108.75 109.75 -4.4539 0 0 0 0.17061 1 22402 22402 27.629 4.8925 1 + 6095 13458 3693 3697 6428 6428 -0.0031399072170188447 DELSPSWQ 8 Unmodified _DELSPSWQ_ 0 0 0 REV__ENST00000557786.1_1_14:102904792-102906791:+|nuORF REV__ENST00000557786.1_1_14:102904792-102906791:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2353820800781 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 77.444 1 73.785 73.285 74.285 -3.6588 0 0 0 0.21452 1 14745 14745 13.508 1.8676 1 + 6096 23016 3694 3698 6429 6429 -0.06291675132843011 DELSPSWQ 8 Unmodified _DELSPSWQ_ 0 0 0 REV__ENST00000557786.1_1_14:102904792-102906791:+|nuORF REV__ENST00000557786.1_1_14:102904792-102906791:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23370361328125 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 82.135 1 78.447 77.947 78.947 -3.6879 0 0 0 0.21452 1 15661 15661 13.508 0 1 + 6097 23016 3694 3698 6430 6430 -0.06291675132843011 DELTAAHSL 9 Unmodified _DELTAAHSL_ 0 0 0 ENST00000467699.5_1_17:7604102-7605361:+|nuORF;ENST00000498311.5_1_17:7604102-7606801:+|nuORF;ENSG00000141499|ENST00000396463|WRAP53 ENST00000467699.5_1_17:7604102-7605361:+|nuORF ENST00000467699.5_1_17:7604102-7605361:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73797607421875 2 478.737814 955.461075 -0.39415 -0.0001887 1.0125 0.00048472 0.61835 0.00029603 478.7381340427982 66.957 0.5631 66.957 66.664 67.227 0 30 15 3 0 0 0 0.081765 2 12922 12893;12922 61.357 27.255 1 3930300 6098 4374 3695 3699 6431;6432 6432 -0.018436997244748454 DELTAAHSL 9 Unmodified _DELTAAHSL_ 0 0 0 ENST00000467699.5_1_17:7604102-7605361:+|nuORF;ENST00000498311.5_1_17:7604102-7606801:+|nuORF;ENSG00000141499|ENST00000396463|WRAP53 ENST00000467699.5_1_17:7604102-7605361:+|nuORF ENST00000467699.5_1_17:7604102-7605361:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72369384765625 2 478.737814 955.461075 -0.090713 -4.3428E-05 0.42779 0.0002048 0.33708 0.00016137 478.7380054370721 70.057 0.63385 66.807 66.476 67.11 -3.2492 28 17 2 0 0 0 0.023387 3 13668 13596;13646;13668 88.904 34.13 1 4141000 6099 4374 3695 3699 6433;6434;6435 6435 -0.018436997244748454 DELTAAHSL 9 Unmodified _DELTAAHSL_ 0 0 0 ENST00000467699.5_1_17:7604102-7605361:+|nuORF;ENST00000498311.5_1_17:7604102-7606801:+|nuORF;ENSG00000141499|ENST00000396463|WRAP53 ENST00000467699.5_1_17:7604102-7605361:+|nuORF ENST00000467699.5_1_17:7604102-7605361:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73785400390625 2 478.737814 955.461075 0.3657 0.00017507 -0.36737 -0.00017587 -0.0016657 -7.9744E-07 478.73766608390264 70.541 0.63909 66.961 66.625 67.264 -3.5798 33 17 2 0 0 0 0.023387 1 13293 13293 88.904 34.13 1 3606400 6100 4374 3695 3699 6436 6436 -0.018436997244748454 DELTAAHSL 9 Unmodified _DELTAAHSL_ 0 0 0 ENST00000467699.5_1_17:7604102-7605361:+|nuORF;ENST00000498311.5_1_17:7604102-7606801:+|nuORF;ENSG00000141499|ENST00000396463|WRAP53 ENST00000467699.5_1_17:7604102-7605361:+|nuORF ENST00000467699.5_1_17:7604102-7605361:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7377624511719 2 478.737814 955.461075 0.34264 0.00016403 -0.14286 -6.8392E-05 0.19978 9.5642E-05 478.73773864087667 70.464 0.7054 66.997 66.638 67.343 -3.467 34 19 2 0 0 0 0.0083817 2 13351 13315;13351 108 49.318 1 2939800 6101 4374 3695 3699 6437;6438 6438 -0.018436997244748454 DELTVENV 8 Unmodified _DELTVENV_ 0 0 0 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;XRN1|p.M1309Cfs*14|1|0.4|ENSG00000114127|chr3:142335462-142335462|T/-|frameshift_variant;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22711181640625 2 459.724372 917.434192 -0.15532 -7.1404E-05 0.27194 0.00012502 0.11662 5.3613E-05 459.72441398950235 87.036 0.63335 83.309 83.079 83.713 -3.727 22 17 2 0 0 0 0.64118 1 17054 17054 38.151 6.0342 1 1514800 6102 26585;2778 3696 3700 6439 6439 -0.027828083356666866 DELVLQQL 8 Unmodified _DELVLQQL_ 0 0 0 MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant;MYO9B|p.K1385Sfs*68|1|0.45|ENSG00000099331|chr19:17198220-17198220|A/-|frameshift_variant;nc|ENSG00000099331|Q13459-2|MYO9B;MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant;ENSG00000099331|ENST00000682292|MYO9B MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 480.26361083984375 2 479.266207 956.517862 -0.047855 -2.2935E-05 -0.44161 -0.00021165 -0.48946 -0.00023458 479.2660722272121 142.72 1.0082 142.72 142.3 143.31 0 52 28 3 0 0 0 8448 1 28432 28432 96.24 24.053 1 10093000 6103 12194 3697 3701 6440 6440 0.03786347832055981 DELVLQQL 8 Unmodified _DELVLQQL_ 0 0 0 MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant;MYO9B|p.K1385Sfs*68|1|0.45|ENSG00000099331|chr19:17198220-17198220|A/-|frameshift_variant;nc|ENSG00000099331|Q13459-2|MYO9B;MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant;ENSG00000099331|ENST00000682292|MYO9B MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 479.7776184082031 2 479.266207 956.517862 0.10601 5.0808E-05 -0.28329 -0.00013577 -0.17728 -8.4965E-05 479.2660261524892 147.39 0.9968 142.7 142.33 143.33 -4.6868 63 28 3 0 0 0 8448 1 29204 29204 51.264 17.671 1 12379000 6104 12194 3697 3701 6441 6441 0.03786347832055981 DELVLQQL 8 Unmodified _DELVLQQL_ 0 0 0 MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant;MYO9B|p.K1385Sfs*68|1|0.45|ENSG00000099331|chr19:17198220-17198220|A/-|frameshift_variant;nc|ENSG00000099331|Q13459-2|MYO9B;MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant;ENSG00000099331|ENST00000682292|MYO9B MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74188232421875 2 479.266207 956.517862 0.31256 0.0001498 -0.41299 -0.00019793 -0.10043 -4.8133E-05 479.26593857299196 147.86 0.91113 142.8 142.39 143.3 -5.0595 56 25 3 0 0 0 0.12337 1 28644 28644 85.272 35.339 1 9063800 6105 12194 3697 3701 6442 6442 0.03786347832055981 DELVLQQL 8 Unmodified _DELVLQQL_ 0 0 0 MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant;MYO9B|p.K1385Sfs*68|1|0.45|ENSG00000099331|chr19:17198220-17198220|A/-|frameshift_variant;nc|ENSG00000099331|Q13459-2|MYO9B;MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant;ENSG00000099331|ENST00000682292|MYO9B MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.266207 956.517862 0.12447 5.9656E-05 -0.51069 -0.00024476 -0.38622 -0.0001851 479.26600683473515 147.96 0.84969 142.8 142.41 143.26 -5.1558 0.049642 -9.9361E-05 NaN 85.272 50 23 3 NaN NaN NaN NaN 0 NaN NaN 0 6140400 6106 12194 3697 3701 0.03786347832055981 DELVNNILY 9 Unmodified _DELVNNILY_ 0 0 0 REV__tr|U7SH74|U7SH74_FUSNUCRISPRsystemCmsproteinCsm5OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02351PE=3SV=1 REV__tr|U7SH74|U7SH74_FUSNUCRISPRsystemCmsproteinCsm5OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02351PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7710571289062 2 546.782222 1091.54989 -0.037899 -2.0723E-05 2.7292 0.0014923 2.6913 0.0014716 546.7826069332532 82.699 0.65998 79.001 78.694 79.354 -3.6985 36 18 3 0 0 0 0.60805 1 15720 15720 12.532 0.89125 1 2803300 + 6107 24881 3698 3702 6443 6443 0.007777155151870829 DELYAKQI 8 Unmodified _DELYAKQI_ 0 0 0 REV__PIPOX|p.R56Q|1|0.59|ENSG00000179761|chr17:29044911-29044911|G/A|missense_variant REV__PIPOX|p.R56Q|1|0.59|ENSG00000179761|chr17:29044911-29044911|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25799560546875 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 147.51 1 142.8 142.3 143.3 -4.7095 0 0 0 0.17841 1 29269 29269 32.305 3.2239 1 + 6108 24473 3699 3703 6444 6444 0.012100613149868877 DELYAKQI 8 Unmodified _DELYAKQI_ 0 0 0 REV__PIPOX|p.R56Q|1|0.59|ENSG00000179761|chr17:29044911-29044911|G/A|missense_variant REV__PIPOX|p.R56Q|1|0.59|ENSG00000179761|chr17:29044911-29044911|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25616455078125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 147.84 1 142.78 142.28 143.28 -5.0595 0 0 0 0.17841 1 28627 28627 32.305 3.2239 1 + 6109 24473 3699 3703 6445 6445 0.012100613149868877 DELYEFPEY 9 Unmodified _DELYEFPEY_ 0 0 0 KDM1B|p.E545Gfs*8|1|0.11|ENSG00000165097|chr6:18217825-18217826|-/G|frameshift_variant;ENSG00000165097|ENST00000650836|KDM1B KDM1B|p.E545Gfs*8|1|0.11|ENSG00000165097|chr6:18217825-18217826|-/G|frameshift_variant KDM1B|p.E545Gfs*8|1|0.11|ENSG00000165097|chr6:18217825-18217826|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2962646484375 2 602.755869 1203.49719 1.144 0.00068954 0.25129 0.00015147 1.3953 0.00084101 602.7558933498119 154.48 0.45453 149.7 149.28 149.74 -4.7791 17 12 2 0 0 0 0.84208 1 30623 30623 7.2892 5.9597 1 2189800 6110 5595 3700 3704 6446 6446 -0.09642287338260758 DEMAAVMGF 9 Unmodified _DEMAAVMGF_ 0 0 0 ENST00000506644.3_1_5:140083564-140085338:+|nuORF;ENSG00000146007|ENST00000274712|ZMAT2 ENST00000506644.3_1_5:140083564-140085338:+|nuORF ENST00000506644.3_1_5:140083564-140085338:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 486.2154846191406 2 485.704071 969.393589 0.29675 0.00014413 -0.16778 -8.1491E-05 0.12897 6.2642E-05 485.70398352588376 161.65 0.98499 156.86 156.42 157.41 -4.7898 60 27 3 0 0 0 1.1384E-05 1 32199 32199 74.216 60.601 1 8205800 6111 4634 3701 3705 6447 6447 -0.09233189251278873 DEMAAVMGF 9 Unmodified _DEMAAVMGF_ 0 0 0 ENST00000506644.3_1_5:140083564-140085338:+|nuORF;ENSG00000146007|ENST00000274712|ZMAT2 ENST00000506644.3_1_5:140083564-140085338:+|nuORF ENST00000506644.3_1_5:140083564-140085338:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 485.704071 969.393589 0.3155 0.00015324 -0.56952 -0.00027662 -0.25402 -0.00012338 485.70396281739545 162.27 0.78365 157.12 156.62 157.4 -5.1438 0.12878 -0.00024759 NaN 74.216 36 22 2 NaN NaN NaN NaN 0 NaN NaN 0 5723000 6112 4634 3701 3705 -0.09233189251278873 DEMAAVMGF 9 Unmodified _DEMAAVMGF_ 0 0 0 ENST00000506644.3_1_5:140083564-140085338:+|nuORF;ENSG00000146007|ENST00000274712|ZMAT2 ENST00000506644.3_1_5:140083564-140085338:+|nuORF ENST00000506644.3_1_5:140083564-140085338:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 485.704071 969.393589 0.25617 0.00012442 -0.43707 -0.00021229 -0.1809 -8.7864E-05 485.70380057913786 162.19 0.82542 157 156.44 157.26 -5.1878 0.0027869 -0.00011892 NaN 74.216 30 23 2 NaN NaN NaN NaN 0 NaN NaN 0 3849100 6113 4634 3701 3705 -0.09233189251278873 DEMDEITQ 8 Unmodified _DEMDEITQ_ 0 0 0 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;DNAH8|p.V3263Sfs*23|1|0.16|ENSG00000124721|chr6:38918047-38918048|-/A|frameshift_variant;DNAH8|p.V3263Sfs*28|1|0.47|ENSG00000124721|chr6:38918048-38918048|A/-|frameshift_variant;DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2708435058594 2 490.697497 979.380442 NaN NaN NaN NaN NaN NaN NaN 154.01 1 148.79 148.29 149.29 -5.2209 0 0 0 0.21486 1 29854 29854 7.9102 0 1 6114 867 3702 3706 6448 6448 -0.11007348829684815 DEMDNFLPD 9 Unmodified _DEMDNFLPD_ 0 0 0 KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549;KIAA1549|p.L283*|1|0.24|ENSG00000122778|chr7:138918778-138918778|A/-|frameshift_variant;KIAA1549|p.N577Kfs*17|1|0.09|ENSG00000122778|chr7:138917895-138917896|-/T|frameshift_variant;KIAA1549|p.G773Afs*8|1|0.2|ENSG00000122778|chr7:138917310-138917310|G/-|frameshift_variant;KIAA1549|p.P943Afs*6|1|0.07|ENSG00000122778|chr7:138916800-138916801|-/T|frameshift_variant;KIAA1549|p.E1477Gfs*3|1|0.36|ENSG00000122778|chr7:138871280-138871281|-/G|frameshift_variant KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7714233398438 2 548.218597 1094.42264 0.43317 0.00023747 0.43406 0.00023796 0.86723 0.00047543 548.2189212016149 100.84 0.58489 96.849 96.516 97.1 -3.9895 37 16 3 0 0 0 0.85111 1 19390 19390 1.4819 0 1 2887500 6115 3241 3703 3707 6449 6449 -0.12079373421306627 DEMFSDIY 8 Unmodified _DEMFSDIY_ 0 0 0 ENSG00000133112|ENST00000530705|TPT1;ENST00000442760.2_1_13:45914489-45915204:-|nuORF ENSG00000133112|ENST00000530705|TPT1 ENSG00000133112|ENST00000530705|TPT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 511.2185363769531 2 510.204958 1018.39536 0.2333 0.00011903 -0.14962 -7.6335E-05 0.083681 4.2695E-05 510.2048717794287 142.93 1.5542 138.04 137.49 139.04 -4.8982 105 43 3 0 0 0 8448 1 27545 27545 57.885 29.424 1 19674000 6116 3785 3704 3708 6450 6450 -0.11309856961679543 DEMFSDIY 8 Unmodified _DEMFSDIY_ 0 0 0 ENSG00000133112|ENST00000530705|TPT1;ENST00000442760.2_1_13:45914489-45915204:-|nuORF ENSG00000133112|ENST00000530705|TPT1 ENSG00000133112|ENST00000530705|TPT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 510.204958 1018.39536 -0.051998 -2.653E-05 -0.043475 -2.2181E-05 -0.095473 -4.8711E-05 510.2049389424368 142.97 1.5225 138.32 137.72 139.24 -4.656 0.17347 -7.9506E-05 NaN 57.885 98 43 4 NaN NaN NaN NaN 0 NaN NaN 0 24032000 6117 3785 3704 3708 -0.11309856961679543 DEMFSDIY 8 Unmodified _DEMFSDIY_ 0 0 0 ENSG00000133112|ENST00000530705|TPT1;ENST00000442760.2_1_13:45914489-45915204:-|nuORF ENSG00000133112|ENST00000530705|TPT1 ENSG00000133112|ENST00000530705|TPT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 510.204958 1018.39536 -0.33216 -0.00016947 0.35348 0.00018035 0.021321 1.0878E-05 510.20509687262387 143.1 1.3635 138.08 137.58 138.94 -5.0261 -0.065849 0.00032555 NaN 57.885 93 38 3 NaN NaN NaN NaN 0 NaN NaN 0 18936000 6118 3785 3704 3708 -0.11309856961679543 DEMKDRAD 8 Unmodified _DEMKDRAD_ 0 0 0 REV__ENSG00000108055|ENST00000361804|SMC3 REV__ENSG00000108055|ENST00000361804|SMC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2539978027344 2 490.211106 978.407659 0.50912 0.00024958 -1.7128 -0.00083965 -1.2037 -0.00059008 490.2103385398338 105.35 0.84204 101.26 100.69 101.53 -4.0913 51 23 3 0 0 0 0.94768 1 20249 20249 24.021 0 1 1988000 + 6119 15107 3705 3709 6451 6451 -0.08240820498645007 DEMKVLVL 8 Oxidation (M) _DEM(Oxidation (M))KVLVL_ DEM(1)KVLVL DEM(85)KVLVL 0 0 1 nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7651062011719 2 481.764986 961.515419 0.37552 0.00018091 -0.18837 -9.0748E-05 0.18716 9.0166E-05 481.76485874768883 103.24 0.78638 103.24 102.83 103.62 0 39 22 2 0 0 0 0.060682 2 20292 20292;20348 85.272 31.696 1 4650200 6120 2844 3706 3710 6452;6453 6452 34 0.03312176102735975 DEMKVLVL 8 Oxidation (M) _DEM(Oxidation (M))KVLVL_ DEM(1)KVLVL DEM(56)KVLVL 0 0 1 nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7652893066406 2 481.764986 961.515419 -0.37685 -0.00018155 0.61329 0.00029546 0.23644 0.00011391 481.765278031522 107.15 0.69733 102.83 102.47 103.17 -4.32 36 19 2 0 0 0 0.13517 1 21129 21129 56.177 25.952 1 1785600 6121 2844 3706 3710 6454 6454 34 0.03312176102735975 DEMKVLVL 8 Oxidation (M) _DEM(Oxidation (M))KVLVL_ DEM(1)KVLVL DEM(65)KVLVL 0 0 1 nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76531982421875 2 481.764986 961.515419 0.00042472 2.0462E-07 -0.0054043 -2.6036E-06 -0.0049795 -2.399E-06 481.76500009426877 107.27 0.75889 102.86 102.54 103.3 -4.4121 36 21 2 0 0 0 0.089098 1 20605 20605 65.235 20.828 1 1401200 6122 2844 3706 3710 6455 6455 34 0.03312176102735975 DEMKVLVL 8 Oxidation (M) _DEM(Oxidation (M))KVLVL_ DEM(1)KVLVL DEM(75)KVLVL 0 0 1 nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76513671875 2 481.764986 961.515419 0.63143 0.0003042 -0.27378 -0.0001319 0.35765 0.0001723 481.7648010230726 107.03 0.86003 102.89 102.46 103.32 -4.135 41 24 2 0 0 0 0.081241 2 20605 20559;20605 74.929 36.778 1 2988400 6123 2844 3706 3710 6456;6457 6457 34 0.03312176102735975 DEMLNKGF 8 Unmodified _DEMLNKGF_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7261657714844 2 477.223485 952.432418 -0.0017048 -8.1358E-07 -1.0423 -0.00049742 -1.044 -0.00049823 477.2234767004599 78.044 0.81822 74.581 74.111 74.929 -3.4633 64 22 4 0 0 0 0.2118 2 15246 15216;15246 44.407 35.06 1 8034300 6124 4382 3707 3711 6458;6459 6459 -0.04570140625253316 DEMLNKGF 8 Unmodified _DEMLNKGF_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7273864746094 2 477.223485 952.432418 -0.028085 -1.3403E-05 -0.42198 -0.00020138 -0.45006 -0.00021478 477.22347905978665 78.312 0.84401 74.545 74.214 75.058 -3.7664 52 23 4 0 0 0 0.56049 1 14847 14847 24.674 1.5255 1 8262600 6125 4382 3707 3711 6460 6460 -0.04570140625253316 DEMLNKGF 8 Unmodified _DEMLNKGF_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.223485 952.432418 0.0053757 2.5654E-06 -0.044607 -2.1287E-05 -0.039231 -1.8722E-05 477.22349334389816 74.536 1.1245 74.536 74.082 75.206 0 -0.018781 0.00020432 NaN 44.407 70 31 3 NaN NaN NaN NaN 0 NaN NaN 0 4615800 6126 4382 3707 3711 -0.04570140625253316 DEMLNKGF 8 Unmodified _DEMLNKGF_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.223485 952.432418 0.029622 1.4136E-05 -0.01782 -8.5043E-06 0.011801 5.6319E-06 477.22344373480104 78.216 0.84419 74.557 74.2 75.044 -3.6588 0.0025854 0.00022988 NaN 44.407 51 23 3 NaN NaN NaN NaN 0 NaN NaN 0 7483100 6127 4382 3707 3711 -0.04570140625253316 DEMLSRGF 8 Unmodified _DEMLSRGF_ 0 0 0 ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 ENST00000465792.1_1_3:186503888-186504086:+|nuORF ENST00000465792.1_1_3:186503888-186504086:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7237243652344 2 477.72111 953.427666 -0.067837 -3.2407E-05 -0.27834 -0.00013297 -0.34617 -0.00016537 477.72107456216816 85.334 0.98771 85.334 84.908 85.895 0 84 27 4 0 0 0 0.075417 4 16661 16609;16661;16703;16715 74.423 45.039 1 47308000 6128 933 3708 3712 6461;6462;6463;6464 6462 -0.05091024768023544 DEMLSRGF 8 Unmodified _DEMLSRGF_ 0 0 0 ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 ENST00000465792.1_1_3:186503888-186504086:+|nuORF ENST00000465792.1_1_3:186503888-186504086:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7237854003906 2 477.72111 953.427666 -0.087608 -4.1852E-05 -0.2752 -0.00013147 -0.3628 -0.00017332 477.72111597443586 89.195 0.98398 85.402 84.946 85.93 -3.7926 102 27 5 0 0 0 0.042072 4 17412 17412;17459;17499;17511 88.954 46.859 1 70513000 6129 933 3708 3712 6465;6466;6467;6468 6465 -0.05091024768023544 DEMLSRGF 8 Unmodified _DEMLSRGF_ 0 0 0 ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 ENST00000465792.1_1_3:186503888-186504086:+|nuORF ENST00000465792.1_1_3:186503888-186504086:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7237243652344 2 477.72111 953.427666 0.37975 0.00018141 -0.85427 -0.0004081 -0.47452 -0.00022669 477.72087159691927 89.459 1.1298 85.415 84.891 86.021 -4.0443 115 31 6 0 0 0 0.077776 4 17074 16974;17026;17074;17086 81.89 44.626 1 67537000 6130 933 3708 3712 6469;6470;6471;6472 6471 -0.05091024768023544 DEMLSRGF 8 Unmodified _DEMLSRGF_ 0 0 0 ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 ENST00000465792.1_1_3:186503888-186504086:+|nuORF ENST00000465792.1_1_3:186503888-186504086:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7236328125 2 477.72111 953.427666 0.21284 0.00010168 -0.32423 -0.00015489 -0.11138 -5.3211E-05 477.7210146902078 89.146 1.0908 85.396 84.915 86.006 -3.7501 120 30 6 0 0 0 0.07456 3 17105 17018;17064;17105 81.89 47.788 1 57746000 6131 933 3708 3712 6473;6474;6475 6475 -0.05091024768023544 DEMNVKVL 8 Oxidation (M) _DEM(Oxidation (M))NVKVL_ DEM(1)NVKVL DEM(56)NVKVL 0 0 1 ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6 ENST00000548725.5_1_12:56552185-56553955:+|nuORF ENST00000548725.5_1_12:56552185-56553955:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7651672363281 2 482.244418 962.474282 -0.099219 -4.7848E-05 -0.24497 -0.00011813 -0.34419 -0.00016598 482.2442741718454 55.498 1.0947 55.498 54.914 56.008 0 64 30 3 0 0 0 0.18374 1 10574 10574 56.177 35.723 1 9719600 6132 1840 3709 3713 6476 6476 16 -0.00845584936735122 DEMNVKVL 8 Oxidation (M) _DEM(Oxidation (M))NVKVL_ DEM(1)NVKVL DEM(75)NVKVL 0 0 1 ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6 ENST00000548725.5_1_12:56552185-56553955:+|nuORF ENST00000548725.5_1_12:56552185-56553955:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78192138671875 2 482.244418 962.474282 -0.041746 -2.0132E-05 -0.15976 -7.7043E-05 -0.20151 -9.7175E-05 482.2443278861231 58.119 1.0088 55.209 54.674 55.683 -2.9105 53 28 2 0 0 0 0.15816 1 11185 11185 74.929 54.475 1 7000200 6133 1840 3709 3713 6477 6477 16 -0.00845584936735122 DEMNVKVL 8 Oxidation (M) _DEM(Oxidation (M))NVKVL_ DEM(1)NVKVL DEM(100)NVKVL 0 0 1 ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6 ENST00000548725.5_1_12:56552185-56553955:+|nuORF ENST00000548725.5_1_12:56552185-56553955:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78607177734375 2 482.244418 962.474282 0.12105 5.8377E-05 -0.28843 -0.0001391 -0.16738 -8.0719E-05 482.2442860690915 58.44 1.083 55.188 54.616 55.699 -3.2517 56 30 2 0 0 0 0.03854 1 10807 10807 99.799 48.944 1 5451000 6134 1840 3709 3713 6478 6478 16 -0.00845584936735122 DEMNVKVL 8 Oxidation (M) _DEM(Oxidation (M))NVKVL_ 0 0 1 ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6 ENST00000548725.5_1_12:56552185-56553955:+|nuORF ENST00000548725.5_1_12:56552185-56553955:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.244418 962.474282 -2.0113E-05 -9.6995E-09 -0.053432 -2.5767E-05 -0.053452 -2.5777E-05 482.2443576935607 58.476 1.2858 55.271 54.644 55.93 -3.2052 -0.020476 0.00011669 NaN 99.799 63 36 2 NaN NaN NaN NaN 0 NaN NaN 0 7275000 6135 1840 3709 3713 16 -0.00845584936735122 DEMNVVRF 8 Unmodified _DEMNVVRF_ 0 0 0 nc|ENSG00000184613|Q99435-4|NELL2;ENSG00000184613|ENST00000429094|NELL2;nc|ENSG00000184613|Q99435-2|NELL2;nc|ENSG00000184613|Q99435-3|NELL2 nc|ENSG00000184613|Q99435-4|NELL2 nc|ENSG00000184613|Q99435-4|NELL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.1044921875 2 505.242209 1008.46987 -0.13033 -6.5849E-05 0.69285 0.00035006 0.56252 0.00028421 505.24264824696684 43.714 0.95425 40.924 40.373 41.327 -2.79 43 26 2 0 0 0 1.0191 1 8230 8230 4.756 2.9118 1 1597200 6136 6925 3710 3714 6479 6479 -0.03403049359644683 DEMNVVRF 8 Unmodified _DEMNVVRF_ 0 0 0 nc|ENSG00000184613|Q99435-4|NELL2;ENSG00000184613|ENST00000429094|NELL2;nc|ENSG00000184613|Q99435-2|NELL2;nc|ENSG00000184613|Q99435-3|NELL2 nc|ENSG00000184613|Q99435-4|NELL2 nc|ENSG00000184613|Q99435-4|NELL2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 505.242209 1008.46987 -0.33895 -0.00017125 0.84712 0.000428 0.50816 0.00025675 505.24280571329257 43.498 1.0029 40.732 40.357 41.36 -2.7661 -0.095955 7.5811E-05 NaN 4.756 44 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1826700 6137 6925 3710 3714 -0.03403049359644683 DEMRDKTVT 9 Unmodified _DEMRDKTVT_ 0 0 0 REV__nc|ENSG00000100644|Q16665-2|HIF1A REV__nc|ENSG00000100644|Q16665-2|HIF1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7742919921875 2 547.760963 1093.50737 0.027556 1.5094E-05 -1.3552 -0.00074235 -1.3277 -0.00072726 547.7602896219607 41.916 0.37926 39.196 39.035 39.414 -2.7191 19 10 2 0 0 0 0.62921 1 7841 7841 18.146 0 1 4544500 + 6138 14731 3711 3715 6480 6480 -0.035640028846728455 DEMSAIRPY 9 Unmodified _DEMSAIRPY_ 0 0 0 REV__ENSG00000170074|ENST00000614127|FAM153A REV__ENSG00000170074|ENST00000614127|FAM153A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2807006835938 2 541.252774 1080.491 NaN NaN NaN NaN NaN NaN NaN 21.598 1 19.877 19.377 20.377 -1.7211 0 0 0 0.23508 1 3385 3385 7.9102 0 1 + 6139 18138 3712 3716 6481 6481 -0.0460308405079104 DEMSIRRH 8 Unmodified _DEMSIRRH_ 0 0 0 REV__nc|ENSG00000059758|Q00537-2|CDK17 REV__nc|ENSG00000059758|Q00537-2|CDK17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2725219726562 2 522.256182 1042.49781 0.50798 0.00026529 0.37076 0.00019363 0.87874 0.00045893 522.2552177757585 161.71 0.1028 156.52 156.47 156.58 -5.1878 4 2 2 0 0 0 1.0191 1 31384 31384 4.756 2.6963 1 1101300 + 6140 14138 3713 3717 6482 6482 -0.021737263795557737 DEMTYLTQ 8 Unmodified _DEMTYLTQ_ 0 0 0 REV__nc|ENSG00000111783|Q33E94-4|RFX4 REV__nc|ENSG00000111783|Q33E94-4|RFX4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 500.74359130859375 2 500.718233 999.421912 0.15394 7.7082E-05 0.92934 0.00046534 1.0833 0.00054242 500.7186135695677 144.07 1.122 139.13 138.6 139.72 -4.9445 72 31 3 0 0 0 8448 1 27913 27913 10.074 3.8681 1 12186000 + 6141 15262 3714 3718 6483 6483 -0.07782168070366424 DEMTYLTQ 8 Unmodified _DEMTYLTQ_ 0 0 0 REV__nc|ENSG00000111783|Q33E94-4|RFX4 REV__nc|ENSG00000111783|Q33E94-4|RFX4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 500.718233 999.421912 0.19725 9.8769E-05 0.67577 0.00033837 0.87303 0.00043714 500.7185610832112 138.86 0.97989 138.86 138.38 139.36 0 -0.2067 -0.00026677 NaN 10.074 63 27 3 NaN NaN NaN NaN 0 NaN NaN 0 13472000 + 6142 15262 3714 3718 -0.07782168070366424 DEMTYLTQ 8 Unmodified _DEMTYLTQ_ 0 0 0 REV__nc|ENSG00000111783|Q33E94-4|RFX4 REV__nc|ENSG00000111783|Q33E94-4|RFX4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 500.718233 999.421912 0.060413 3.025E-05 0.77719 0.00038915 0.83761 0.0004194 500.718561963961 143.77 0.89731 139.11 138.76 139.65 -4.656 0.043592 -0.0001652 NaN 10.074 54 25 3 NaN NaN NaN NaN 0 NaN NaN 0 10595000 + 6143 15262 3714 3718 -0.07782168070366424 DEMTYLTQ 8 Unmodified _DEMTYLTQ_ 0 0 0 REV__nc|ENSG00000111783|Q33E94-4|RFX4 REV__nc|ENSG00000111783|Q33E94-4|RFX4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 500.718233 999.421912 -0.078901 -3.9507E-05 1.2488 0.00062532 1.1699 0.00058581 500.71883275297864 144.24 1.0362 139.17 138.63 139.66 -5.0671 0.10042 0.00030712 NaN 10.074 73 29 3 NaN NaN NaN NaN 0 NaN NaN 0 21865000 + 6144 15262 3714 3718 -0.07782168070366424 DEMTYLTQ 8 Unmodified _DEMTYLTQ_ 0 0 0 REV__nc|ENSG00000111783|Q33E94-4|RFX4 REV__nc|ENSG00000111783|Q33E94-4|RFX4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 500.718233 999.421912 0.15394 7.7082E-05 0.92934 0.00046534 1.0833 0.00054242 500.7186135695677 144.07 1.122 139.13 138.6 139.72 -4.9445 0.062685 -1.2841E-05 NaN 10.074 72 31 3 NaN NaN NaN NaN 0 NaN NaN 0 12186000 + 6145 15262 3714 3718 -0.07782168070366424 DEMVGANF 8 Unmodified _DEMVGANF_ 0 0 0 SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant;SNX18|p.A416Pfs*42|2|0.34|ENSG00000178996|chr5:54519192-54519192|C/-|frameshift_variant;nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 441.2118835449219 2 441.686736 881.358918 NaN NaN NaN NaN NaN NaN NaN 91.922 1 91.922 91.422 92.422 0 0 0 0 0.15004 1 17972 17972 8.966 7.5109 1 6146 6598 3715 3719 6484 6484 -0.08650689067735584 DEMVGIIY 8 Oxidation (M) _DEM(Oxidation (M))VGIIY_ DEM(1)VGIIY DEM(57)VGIIY 0 0 1 ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7269592285156 2 478.225694 954.436834 0.068722 3.2865E-05 0.3228 0.00015437 0.39152 0.00018723 478.2257613896147 116.08 0.93735 111.59 111.17 112.11 -4.486 37 26 2 0 0 0 0.13334 1 22907 22907 56.541 30.2 1 1122500 6147 4537 3716 3720 6485 6485 71 -0.042206762023511146 DEMVGIIY 8 Oxidation (M) _DEM(Oxidation (M))VGIIY_ DEM(1)VGIIY DEM(47)VGIIY 0 0 1 ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72705078125 2 478.225694 954.436834 0.50646 0.0002422 -0.33438 -0.00015991 0.17207 8.229E-05 478.22557062797995 115.83 0.5596 111.47 111.25 111.81 -4.3585 27 15 2 0 0 0 0.18731 1 22330 22330 46.921 14.804 1 1274900 6148 4537 3716 3720 6486 6486 71 -0.042206762023511146 DENDADSDY 9 Unmodified _DENDADSDY_ 0 0 0 CON__Q28107 CON__Q28107 CON__Q28107 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2821655273438 2 522.175441 1042.33633 NaN NaN NaN NaN NaN NaN NaN 94.843 1 90.962 90.462 91.462 -3.881 0 0 0 0.23508 1 18198 18198 4.756 1.1595 1 + 6149 684 3717 3721 6487 6487 -0.18314661722320125 DENDDDDDE 9 Unmodified _DENDDDDDE_ 0 0 0 REV__ENST00000415681.1_1_6:55804812-55805085:-|nuORF REV__ENST00000415681.1_1_6:55804812-55805085:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2737426757812 2 541.157445 1080.30034 NaN NaN NaN NaN NaN NaN NaN 111.89 1 111.89 111.39 112.39 0 0 0 0 0.19624 1 22013 22013 0 0 1 + 6150 21458 3718 3722 6488 6488 -0.23660163689851288 DENDEEEY 8 Unmodified _DENDEEEY_ 0 0 0 ENSG00000140259|ENST00000267812|MFAP1 ENSG00000140259|ENST00000267812|MFAP1 ENSG00000140259|ENST00000267812|MFAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2694702148438 2 521.677816 1041.34108 0.23545 0.00012283 0.7854 0.00040972 1.0208 0.00053255 521.6784520240474 23.594 0.38508 23.594 23.514 23.899 0 16 10 2 0 0 0 1.0249 1 4072 4072 0.69038 0 1 475290 6151 4284 3719 3723 6489 6489 -0.17793777579549896 DENDQNRR 8 Unmodified _DENDQNRR_ 0 0 0 REV__KAT5|p.Q172Rfs*41|1|0.35|ENSG00000172977|chr11:65713657-65713657|T/-|frameshift_variant REV__KAT5|p.Q172Rfs*41|1|0.35|ENSG00000172977|chr11:65713657-65713657|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6853637695312 2 523.734126 1045.4537 NaN NaN NaN NaN NaN NaN NaN 22.237 1 20.783 20.283 21.283 -1.4535 0 0 0 0.23664 1 3538 3538 3.2813 0.78282 1 + 6152 23695 3720 3724 6490 6490 -0.06721039272201779 DENEHQLSL 9 Unmodified _DENEHQLSL_ 0 0 0 ENST00000436123.1_1_3:24138699-24138891:-|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000523339.1_1_5:170814874-170817152:+|nuORF;NPM1|p.A160Tfs*3|1|0.11|ENSG00000181163|chr5:171392931-171392932|-/ACCA|frameshift_variant;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1 ENST00000436123.1_1_3:24138699-24138891:-|nuORF ENST00000436123.1_1_3:24138699-24138891:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7809448242188 2 542.74891 1083.48327 0.011811 6.4102E-06 0.41232 0.00022379 0.42414 0.0002302 542.7490899210778 65.616 0.85992 65.616 65.139 65.999 0 57 24 3 0 0 0 0.12505 1 12628 12628 47.749 5.6541 1 8867000 6153 6712 3721 3725 6491 6491 -0.055135200467020695 DENEHQLSL 9 Unmodified _DENEHQLSL_ 0 0 0 ENST00000436123.1_1_3:24138699-24138891:-|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000523339.1_1_5:170814874-170817152:+|nuORF;NPM1|p.A160Tfs*3|1|0.11|ENSG00000181163|chr5:171392931-171392932|-/ACCA|frameshift_variant;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1 ENST00000436123.1_1_3:24138699-24138891:-|nuORF ENST00000436123.1_1_3:24138699-24138891:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7761840820312 2 542.74891 1083.48327 0.16179 8.7812E-05 -0.045795 -2.4855E-05 0.116 6.2957E-05 542.7488388740629 68.594 0.83313 65.414 65.035 65.868 -3.1796 55 23 3 0 0 0 0.09885 1 13340 13340 56.177 10.156 1 14688000 6154 6712 3721 3725 6492 6492 -0.055135200467020695 DENEHQLSL 9 Unmodified _DENEHQLSL_ 0 0 0 ENST00000436123.1_1_3:24138699-24138891:-|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000523339.1_1_5:170814874-170817152:+|nuORF;NPM1|p.A160Tfs*3|1|0.11|ENSG00000181163|chr5:171392931-171392932|-/ACCA|frameshift_variant;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1 ENST00000436123.1_1_3:24138699-24138891:-|nuORF ENST00000436123.1_1_3:24138699-24138891:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7796630859375 2 542.74891 1083.48327 0.36297 0.000197 -0.1473 -7.9947E-05 0.21567 0.00011706 542.748844419432 69.06 0.7253 65.524 65.074 65.799 -3.5362 45 19 3 0 0 0 0.34411 2 12977 12932;12977 29.082 5.6234 1 9995300 6155 6712 3721 3725 6493;6494 6494 -0.055135200467020695 DENEHQLSL 9 Unmodified _DENEHQLSL_ 0 0 0 ENST00000436123.1_1_3:24138699-24138891:-|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000523339.1_1_5:170814874-170817152:+|nuORF;NPM1|p.A160Tfs*3|1|0.11|ENSG00000181163|chr5:171392931-171392932|-/ACCA|frameshift_variant;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1 ENST00000436123.1_1_3:24138699-24138891:-|nuORF ENST00000436123.1_1_3:24138699-24138891:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.74891 1083.48327 0.42185 0.00022896 -0.197 -0.00010692 0.22486 0.00012204 542.7487905156088 68.851 0.9 65.46 65.081 65.981 -3.3903 -0.043335 -0.00022773 NaN 56.177 48 25 3 NaN NaN NaN NaN 0 NaN NaN 0 11402000 6156 6712 3721 3725 -0.055135200467020695 DENEICAY 8 Unmodified _DENEICAY_ 0 0 0 REV__ENSG00000235568|ENST00000329021|NFAM1 REV__ENSG00000235568|ENST00000329021|NFAM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7239990234375 2 478.686933 955.359312 NaN NaN NaN NaN NaN NaN NaN 117.33 1 112.84 112.34 113.34 -4.486 0 0 0 0.21486 1 23128 23128 10.183 0.83596 1 + 6157 19763 3722 3726 6495 6495 -0.12015314138545818 DENETENEAE 10 Unmodified _DENETENEAE_ 0 0 0 REV__AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant REV__AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2750854492188 2 590.217837 1178.42112 NaN NaN NaN NaN NaN NaN NaN 119.98 1 115.51 115.01 116.01 -4.467 0 0 0 0.22588 1 23097 23097 3.2813 0.28607 1 + 6158 12985 3723 3727 6496 6496 -0.1609533597634254 DENFILKH 8 Unmodified _DENFILKH_ 0 0 0 ENSG00000114857|ENST00000232978|NKTR;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;nc|ENSG00000084072|Q9UNP9-3|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-2|PPIE;ENST00000482751.5_1_1:40208803-40219024:+|nuORF;ENSG00000196262|ENST00000468812|PPIA;PPIE|p.T229M|1|0.16|ENSG00000084072|chr1:39749080-39749080|C/T|missense_variant;ENST00000414193.2_1_X:100698832-100699039:-|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000470213.5_1_1:40214588-40218763:+|nuORF;ENST00000441944.2_1_9:7597894-7598236:+|nuORF;ENST00000567559.1_1_16:77926320-77926647:+|nuORF;ENST00000468735.6_1_3:42662892-42668896:+|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;ENST00000567565.3_1_15:76039287-76039500:+|nuORF;ENST00000466553.1_1_3:42662892-42672698:+|nuORF;ENST00000452411.1_1_7:98083525-98083918:-|nuORF;ENST00000577627.1_1_18:5002795-5003119:-|nuORF ENSG00000114857|ENST00000232978|NKTR;ENST00000577627.1_1_18:5002795-5003119:-|nuORF ENSG00000114857|ENST00000232978|NKTR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 508.2640686035156 2 508.263999 1014.51345 -0.037849 -1.9237E-05 0.20016 0.00010173 0.16231 8.2497E-05 508.2640318904597 68.747 1.1439 65.211 64.691 65.834 -3.5362 72 31 3 0 0 0 0.66265 1 12837 12837 18.135 6.4947 1 34807000 6159 2814;11469 3724 3728 6497 6497 0.006768834091417375 DENFILKH 8 Unmodified _DENFILKH_ 0 0 0 ENSG00000114857|ENST00000232978|NKTR;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;nc|ENSG00000084072|Q9UNP9-3|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-2|PPIE;ENST00000482751.5_1_1:40208803-40219024:+|nuORF;ENSG00000196262|ENST00000468812|PPIA;PPIE|p.T229M|1|0.16|ENSG00000084072|chr1:39749080-39749080|C/T|missense_variant;ENST00000414193.2_1_X:100698832-100699039:-|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000470213.5_1_1:40214588-40218763:+|nuORF;ENST00000441944.2_1_9:7597894-7598236:+|nuORF;ENST00000567559.1_1_16:77926320-77926647:+|nuORF;ENST00000468735.6_1_3:42662892-42668896:+|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;ENST00000567565.3_1_15:76039287-76039500:+|nuORF;ENST00000466553.1_1_3:42662892-42672698:+|nuORF;ENST00000452411.1_1_7:98083525-98083918:-|nuORF;ENST00000577627.1_1_18:5002795-5003119:-|nuORF ENSG00000114857|ENST00000232978|NKTR;ENST00000577627.1_1_18:5002795-5003119:-|nuORF ENSG00000114857|ENST00000232978|NKTR MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 508.263999 1014.51345 -0.1231 -6.2565E-05 0.22363 0.00011366 0.10053 5.1097E-05 508.2640497236999 65.303 1.1443 65.303 64.65 65.794 0 0.062751 9.7602E-05 NaN 18.135 93 32 4 NaN NaN NaN NaN 0 NaN NaN 0 25707000 6160 2814;11469 3724 3728 0.006768834091417375 DENFILKH 8 Unmodified _DENFILKH_ 0 0 0 ENSG00000114857|ENST00000232978|NKTR;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;nc|ENSG00000084072|Q9UNP9-3|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-2|PPIE;ENST00000482751.5_1_1:40208803-40219024:+|nuORF;ENSG00000196262|ENST00000468812|PPIA;PPIE|p.T229M|1|0.16|ENSG00000084072|chr1:39749080-39749080|C/T|missense_variant;ENST00000414193.2_1_X:100698832-100699039:-|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000470213.5_1_1:40214588-40218763:+|nuORF;ENST00000441944.2_1_9:7597894-7598236:+|nuORF;ENST00000567559.1_1_16:77926320-77926647:+|nuORF;ENST00000468735.6_1_3:42662892-42668896:+|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;ENST00000567565.3_1_15:76039287-76039500:+|nuORF;ENST00000466553.1_1_3:42662892-42672698:+|nuORF;ENST00000452411.1_1_7:98083525-98083918:-|nuORF;ENST00000577627.1_1_18:5002795-5003119:-|nuORF ENSG00000114857|ENST00000232978|NKTR;ENST00000577627.1_1_18:5002795-5003119:-|nuORF ENSG00000114857|ENST00000232978|NKTR MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 508.263999 1014.51345 -0.14946 -7.5964E-05 0.30276 0.00015388 0.1533 7.7918E-05 508.2641097618512 68.369 1.0707 65.189 64.692 65.763 -3.1796 -0.050606 0.00017804 NaN 18.135 79 30 4 NaN NaN NaN NaN 0 NaN NaN 0 43546000 6161 2814;11469 3724 3728 0.006768834091417375 DENFILKH 8 Unmodified _DENFILKH_ 0 0 0 ENSG00000114857|ENST00000232978|NKTR;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;nc|ENSG00000084072|Q9UNP9-3|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-2|PPIE;ENST00000482751.5_1_1:40208803-40219024:+|nuORF;ENSG00000196262|ENST00000468812|PPIA;PPIE|p.T229M|1|0.16|ENSG00000084072|chr1:39749080-39749080|C/T|missense_variant;ENST00000414193.2_1_X:100698832-100699039:-|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000470213.5_1_1:40214588-40218763:+|nuORF;ENST00000441944.2_1_9:7597894-7598236:+|nuORF;ENST00000567559.1_1_16:77926320-77926647:+|nuORF;ENST00000468735.6_1_3:42662892-42668896:+|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;ENST00000567565.3_1_15:76039287-76039500:+|nuORF;ENST00000466553.1_1_3:42662892-42672698:+|nuORF;ENST00000452411.1_1_7:98083525-98083918:-|nuORF;ENST00000577627.1_1_18:5002795-5003119:-|nuORF ENSG00000114857|ENST00000232978|NKTR;ENST00000577627.1_1_18:5002795-5003119:-|nuORF ENSG00000114857|ENST00000232978|NKTR MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 508.263999 1014.51345 0.25924 0.00013176 -0.17167 -8.7252E-05 0.087574 4.4511E-05 508.26385656499644 68.647 1.3847 65.257 64.596 65.981 -3.3903 0.016817 -0.00030423 NaN 18.135 120 39 4 NaN NaN NaN NaN 0 NaN NaN 0 32043000 6162 2814;11469 3724 3728 0.006768834091417375 DENGSKGYAF 10 Unmodified _DENGSKGYAF_ 0 0 0 PABPC4|p.V294*|1|0.12|ENSG00000090621|chr1:39567843-39567843|C/-|frameshift_variant;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4 PABPC4|p.V294*|1|0.12|ENSG00000090621|chr1:39567843-39567843|C/-|frameshift_variant PABPC4|p.V294*|1|0.12|ENSG00000090621|chr1:39567843-39567843|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7887573242188 2 544.238178 1086.4618 NaN NaN NaN NaN NaN NaN NaN 52.254 1 52.254 51.754 52.754 0 0 0 0 0.13776 1 9930 9930 38.615 7.9782 1 6163 1791 3725 3729 6498 6498 -0.07796905075429095 DENILWLDY 9 Unmodified _DENILWLDY_ 0 0 0 ENST00000562784.1_1_15:72501984-72509791:-|nuORF;nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM ENST00000562784.1_1_15:72501984-72509791:-|nuORF ENST00000562784.1_1_15:72501984-72509791:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2693481445312 2 590.779679 1179.5448 0.36152 0.00021358 -1.3994 -0.00082675 -1.0379 -0.00061317 591.2795272309445 171.24 0.1673 171.24 171.17 171.33 0 6 4 2 0 0 0 0.64397 1 35257 35257 24.991 16.246 1 19609000 6164 1389 3726 3730 6499 6499 -0.03778588347427103 DENILWLDY 9 Unmodified _DENILWLDY_ 0 0 0 ENST00000562784.1_1_15:72501984-72509791:-|nuORF;nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM ENST00000562784.1_1_15:72501984-72509791:-|nuORF ENST00000562784.1_1_15:72501984-72509791:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2760620117188 2 590.779679 1179.5448 0.67962 0.00040151 -3.8836 -0.0022943 -3.2039 -0.0018928 591.2788622731305 72.666 0.28915 69.038 68.838 69.127 -3.6275 10 7 2 0 0 0 0.7906 1 13735 13735 13.042 1.4022 1 731080 6165 1389 3726 3730 6500 6500 -0.03778588347427103 DENITQML 8 Unmodified _DENITQML_ 0 0 0 nc|ENSG00000171444|P23508|MCC nc|ENSG00000171444|P23508|MCC nc|ENSG00000171444|P23508|MCC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78668212890625 2 482.226225 962.437897 0.10001 4.8227E-05 0.029174 1.4069E-05 0.12918 6.2295E-05 482.2262954705439 136.02 0.63168 131.13 130.82 131.45 -4.8951 23 17 2 0 0 0 0.55701 1 26116 26116 41.84 3.8656 1 2338700 6166 12461 3727 3731 6501 6501 -0.0448246183344736 DENITQML 8 Unmodified _DENITQML_ 0 0 0 nc|ENSG00000171444|P23508|MCC nc|ENSG00000171444|P23508|MCC nc|ENSG00000171444|P23508|MCC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.226225 962.437897 0.13612 6.564E-05 0.39505 0.0001905 0.53117 0.00025614 482.22640208075 136.04 0.53886 131.21 130.98 131.52 -4.8307 0.043589 0.00021979 NaN 49.933 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1397100 6167 12461 3727 3731 -0.0448246183344736 DENKKTFSP 9 Unmodified _DENKKTFSP_ 0 0 0 REV__ENSG00000155761|ENST00000336338|SPAG17 REV__ENSG00000155761|ENST00000336338|SPAG17 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 38.141 1 35.699 35.199 36.199 -2.4419 0 0 0 0.18705 1 6777 6777 25.399 0 1 + 6168 17225 3728 3732 6502 6502 -0.015837416616705013 DENLRKQY 8 Unmodified _DENLRKQY_ 0 0 0 LUC7L3|p.C195Vfs*5|1|0.12|ENSG00000108848|chr17:50744702-50744702|A/-|frameshift_variant;ENST00000508482.5_1_17:48797176-48828101:+|nuORF;LUC7L3|p.S389Kfs*2|3|0.28|ENSG00000108848|chr17:50750520-50750521|-/A|frameshift_variant;LUC7L3|p.S389Vfs*3|1|0.27|ENSG00000108848|chr17:50750521-50750521|A/-|frameshift_variant;LUC7L3|p.S389Kfs*4|1|0.13|ENSG00000108848|chr17:50750520-50750521|-/AA|frameshift_variant;ENSG00000108848|ENST00000505658|LUC7L3 LUC7L3|p.C195Vfs*5|1|0.12|ENSG00000108848|chr17:50744702-50744702|A/-|frameshift_variant LUC7L3|p.C195Vfs*5|1|0.12|ENSG00000108848|chr17:50744702-50744702|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.269775390625 2 533.269813 1064.52507 0.10724 5.7188E-05 0.071372 3.806E-05 0.17861 9.5248E-05 533.26965448556 33.228 0.48503 33.228 32.954 33.439 0 22 13 2 0 0 0 0.58432 1 6075 6075 23.148 2.6948 1 1948900 6169 2498 3729 3733 6503 6503 -0.004609195675357114 DENLVEVKF 9 Unmodified _DENLVEVKF_ 0 0 0 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7741088867188 2 546.782222 1091.54989 0.19967 0.00010918 0.18191 9.9463E-05 0.38158 0.00020864 546.7821688183797 134.91 0.6396 130.27 129.98 130.62 -4.6399 41 17 3 0 0 0 0.080883 3 26608 26589;26608;26645 61.602 42.345 1 4225400 6170 4352 3730 3734 6504;6505;6506 6505 0.007777155151870829 DENLVEVKF 9 Unmodified _DENLVEVKF_ 0 0 0 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7880859375 2 546.782222 1091.54989 0.078314 4.282E-05 0.36257 0.00019825 0.44089 0.00024107 546.7823498564056 135.23 0.59415 130.34 130.01 130.6 -4.8951 46 16 4 0 0 0 0.19171 3 25961 25953;25961;26009 38.176 23.337 1 5713400 6171 4352 3730 3734 6507;6508;6509 6508 0.007777155151870829 DENLVEVKF 9 Unmodified _DENLVEVKF_ 0 0 0 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.782222 1091.54989 0.32915 0.00017997 0.12444 6.8044E-05 0.45359 0.00024802 546.7822136441725 130.57 0.60094 130.57 130.16 130.76 0 0.16462 -4.1615E-05 NaN 61.602 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 6766200 6172 4352 3730 3734 0.007777155151870829 DENLVEVKF 9 Unmodified _DENLVEVKF_ 0 0 0 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.782222 1091.54989 0.2958 0.00016174 -0.013149 -7.1897E-06 0.28265 0.00015455 546.7822813489879 135.29 0.70425 130.46 130.07 130.77 -4.8307 0.051449 -0.00019208 NaN 61.602 44 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4641400 6173 4352 3730 3734 0.007777155151870829 DENMTASTY 9 Unmodified _DENMTASTY_ 0 0 0 nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;TANC2|p.L657Sfs*6|1|0.02|ENSG00000170921|chr17:63354997-63354998|-/T|frameshift_variant;nc|ENSG00000170921|Q9HCD6-3|TANC2;nc|ENSG00000170921|Q9HCD6-4|TANC2;TANC2|p.P1519Lfs*33|3|0.27|ENSG00000170921|chr17:63420533-63420533|C/-|frameshift_variant nc|ENSG00000170921|Q9HCD6|TANC2 nc|ENSG00000170921|Q9HCD6|TANC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 516.7922973632812 2 516.202947 1030.39134 -0.23627 -0.00012196 0.17881 9.23E-05 -0.057461 -2.9662E-05 516.203017414577 43.823 1.0412 41.033 40.771 41.812 -2.79 38 29 2 0 0 0 0.80521 1 8292 8292 15.847 10.617 1 1020300 6174 6112 3731 3735 6510 6510 -0.12263946455391306 DENMTASTY 9 Unmodified _DENMTASTY_ 0 0 0 nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;TANC2|p.L657Sfs*6|1|0.02|ENSG00000170921|chr17:63354997-63354998|-/T|frameshift_variant;nc|ENSG00000170921|Q9HCD6-3|TANC2;nc|ENSG00000170921|Q9HCD6-4|TANC2;TANC2|p.P1519Lfs*33|3|0.27|ENSG00000170921|chr17:63420533-63420533|C/-|frameshift_variant nc|ENSG00000170921|Q9HCD6|TANC2 nc|ENSG00000170921|Q9HCD6|TANC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 516.202947 1030.39134 -0.62009 -0.00032009 0.2955 0.00015254 -0.32459 -0.00016755 516.2030099480712 44.182 0.68998 41.416 40.974 41.664 -2.7661 0.1915 6.6733E-05 NaN 15.847 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 951250 6175 6112 3731 3735 -0.12263946455391306 DENQFVAV 8 Unmodified _DENQFVAV_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53936767578125 2 461.219257 920.423961 0.038497 1.7756E-05 0.93228 0.00042999 0.97078 0.00044774 461.2196784169492 90.644 1.207 90.644 90.15 91.357 0 73 33 3 0 0 0 0.036491 1 17688 17688 100.37 29.238 1 7168200 6176 886 3732 3736 6511 6511 -0.039433712702361845 DENQFVAV 8 Unmodified _DENQFVAV_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.219257 920.423961 -0.055092 -2.5409E-05 1.6517 0.00076181 1.5966 0.0007364 461.22017709882306 94.623 1.3606 90.632 90.036 91.397 -3.9907 0.0057917 0.00062618 NaN 100.37 71 38 3 NaN NaN NaN NaN 0 NaN NaN 0 5858000 6177 886 3732 3736 -0.039433712702361845 DENQFVAV 8 Unmodified _DENQFVAV_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.219257 920.423961 0.12163 5.61E-05 0.79886 0.00036845 0.9205 0.00042455 461.2195895712058 94.76 1.0153 90.569 90.195 91.21 -4.1911 -0.056694 -0.00016054 NaN 100.37 60 28 3 NaN NaN NaN NaN 0 NaN NaN 0 5828400 6178 886 3732 3736 -0.039433712702361845 DENQFVAV 8 Unmodified _DENQFVAV_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.219257 920.423961 0.018549 8.5552E-06 0.89963 0.00041493 0.91818 0.00042348 461.21970049715134 94.512 1.1815 90.659 90.288 91.47 -3.8523 0.033209 -6.7588E-05 NaN 100.37 79 33 3 NaN NaN NaN NaN 0 NaN NaN 0 6591000 6179 886 3732 3736 -0.039433712702361845 DENRIAVI 8 Unmodified _DENRIAVI_ 0 0 0 FLRT2|p.L542Cfs*5|1|0.43|ENSG00000185070|chr14:85623130-85623130|C/-|frameshift_variant;ENSG00000185070|ENST00000330753|FLRT2 FLRT2|p.L542Cfs*5|1|0.43|ENSG00000185070|chr14:85623130-85623130|C/-|frameshift_variant FLRT2|p.L542Cfs*5|1|0.43|ENSG00000185070|chr14:85623130-85623130|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2557067871094 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 65.31 1 65.31 64.81 65.81 0 0 0 0 0.17841 1 12589 12589 32.305 0 1 6180 6957 3733 3737 6512 6512 0.03068596892092046 DENRVPDL 8 Unmodified _DENRVPDL_ 0 0 0 nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7420959472656 2 479.235439 956.456324 -0.3794 -0.00018182 0.59793 0.00028655 0.21853 0.00010473 479.23567149897997 65.479 0.86987 65.479 64.924 65.794 0 36 24 2 0 0 0 0.18575 1 12651 12651 66.457 16.524 1 4021400 6181 4267 3734 3738 6513 6513 -0.023645838672450736 DENRVPDL 8 Unmodified _DENRVPDL_ 0 0 0 nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7389831542969 2 479.235439 956.456324 -0.049721 -2.3828E-05 0.30823 0.00014772 0.25851 0.00012389 479.2355437456545 68.57 0.76308 65.39 65.035 65.798 -3.1796 36 21 2 0 0 0 0.17068 1 13290 13290 72.968 29.11 1 4831400 6182 4267 3734 3738 6514 6514 -0.023645838672450736 DENRVPDL 8 Unmodified _DENRVPDL_ 0 0 0 nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7283630371094 2 479.235439 956.456324 0.34811 0.00016683 -0.16018 -7.6762E-05 0.18793 9.0063E-05 479.2353387719959 68.892 0.7253 65.356 65.074 65.799 -3.5362 31 19 2 0 0 0 0.13033 1 12992 12992 96.111 42.278 1 3304500 6183 4267 3734 3738 6515 6515 -0.023645838672450736 DENRVPDL 8 Unmodified _DENRVPDL_ 0 0 0 nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7425842285156 2 479.235439 956.456324 0.31741 0.00015211 -0.10393 -4.9809E-05 0.21347 0.0001023 479.23537773050356 68.816 0.89719 65.425 64.912 65.809 -3.3903 42 25 2 0 0 0 0.38197 1 12942 12942 57.722 5.4536 1 3919000 6184 4267 3734 3738 6516 6516 -0.023645838672450736 DENSFSYGY 9 Unmodified _DENSFSYGY_ 0 0 0 REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1 REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.267333984375 2 541.209086 1080.40362 NaN NaN NaN NaN NaN NaN NaN 81.002 1 77.445 76.945 77.945 -3.557 0 0 0 0.23508 1 15816 15816 8.5933 1.304 1 + 6185 25189 3735 3739 6517 6517 -0.13336586720697596 DENTSIIFR 9 Unmodified _DENTSIIFR_ 0 0 0 nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA nc|ENSG00000164944|Q69YN4-4|VIRMA nc|ENSG00000164944|Q69YN4-4|VIRMA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7820434570312 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 141.2 1 136.22 135.72 136.72 -4.9877 0 0 0 0.23508 1 27188 27188 10.074 0.6908 1 6186 5579 3736 3740 6518 6518 -0.0026405277030789875 DENVTGYIAL 10 Unmodified _DENVTGYIAL_ 0 0 0 REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7719116210938 2 547.771854 1093.52915 0.1549 8.4849E-05 -0.13744 -7.5285E-05 0.01746 9.5643E-06 547.7717730735382 59.661 1.6126 56.727 55.625 57.238 -2.9333 105 45 4 0 0 0 0.33865 1 11541 11541 34.932 0 1 25489000 + 6187 16717 3737 3741 6519 6519 -0.013868748644881634 DENWTPPTS 9 Unmodified _DENWTPPTS_ 0 0 0 REV__COL26A1|p.S218Lfs*131|1|0.12|ENSG00000160963|chr7:101544035-101544035|C/-|frameshift_variant REV__COL26A1|p.S218Lfs*131|1|0.12|ENSG00000160963|chr7:101544035-101544035|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6812744140625 2 523.724904 1045.43525 -0.12293 -6.438E-05 -2.3637 -0.0012379 -2.4866 -0.0013023 523.7243908727578 60.644 0.38824 60.644 60.591 60.979 0 13 10 2 0 0 0 0.67531 1 11627 11627 7.9102 1.7044 1 1504300 + 6188 13484 3738 3742 6520 6520 -0.08564593966752909 DENYFVNY 8 Unmodified _DENYFVNY_ 0 0 0 KBTBD4|p.L138Wfs*13|1|0.08|ENSG00000123444|chr11:47577587-47577587|A/-|frameshift_variant;nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4 KBTBD4|p.L138Wfs*13|1|0.08|ENSG00000123444|chr11:47577587-47577587|A/-|frameshift_variant KBTBD4|p.L138Wfs*13|1|0.08|ENSG00000123444|chr11:47577587-47577587|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2720947265625 2 532.221997 1062.42944 0.85256 0.00045375 -1.0546 -0.00056129 -0.20206 -0.00010754 532.2213189691587 118.62 0.79155 114.01 113.67 114.46 -4.6106 40 21 3 0 0 0 8448 2 22760 22760;22801 33.593 27.005 1 2891400 6189 3269 3739 3743 6521;6522 6521 -0.09927692478413519 DENYFVNY 8 Unmodified _DENYFVNY_ 0 0 0 KBTBD4|p.L138Wfs*13|1|0.08|ENSG00000123444|chr11:47577587-47577587|A/-|frameshift_variant;nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4 KBTBD4|p.L138Wfs*13|1|0.08|ENSG00000123444|chr11:47577587-47577587|A/-|frameshift_variant KBTBD4|p.L138Wfs*13|1|0.08|ENSG00000123444|chr11:47577587-47577587|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.221997 1062.42944 0.31545 0.00016789 -0.49522 -0.00026357 -0.17978 -9.5682E-05 532.2217307234304 118.63 0.76936 114.12 113.8 114.57 -4.502 0.06373 0.00024892 NaN 33.593 44 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3571700 6190 3269 3739 3743 -0.09927692478413519 DENYFVNY 8 Unmodified _DENYFVNY_ 0 0 0 KBTBD4|p.L138Wfs*13|1|0.08|ENSG00000123444|chr11:47577587-47577587|A/-|frameshift_variant;nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4 KBTBD4|p.L138Wfs*13|1|0.08|ENSG00000123444|chr11:47577587-47577587|A/-|frameshift_variant KBTBD4|p.L138Wfs*13|1|0.08|ENSG00000123444|chr11:47577587-47577587|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.221997 1062.42944 0.47606 0.00025337 -0.61228 -0.00032587 -0.13622 -7.2498E-05 532.2215489621029 118.45 0.67427 114.05 113.71 114.38 -4.4088 -0.014477 0.00012432 NaN 33.593 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2543600 6191 3269 3739 3743 -0.09927692478413519 DEPAPPEGTAP 11 Unmodified _DEPAPPEGTAP_ 0 0 0 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.268310546875 2 540.745836 1079.47712 0.29991 0.00016217 0.45346 0.00024521 0.75337 0.00040738 540.7459845079405 33.661 0.45158 31.514 31.255 31.707 -2.1468 30 12 3 0 0 0 0.89764 1 5834 5834 12.241 0 1 3707200 6192 5298 3740 3744 6523 6523 -0.05944038278221342 DEPCPDTGPD 10 Unmodified _DEPCPDTGPD_ 0 0 0 REV__TLE6|p.C196Y|1|0.1|ENSG00000104953|chr19:2987752-2987752|G/A|missense_variant REV__TLE6|p.C196Y|1|0.1|ENSG00000104953|chr19:2987752-2987752|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6884155273438 2 523.192579 1044.37061 -0.020227 -1.0583E-05 -3.5733 -0.0018695 -3.5936 -0.0018801 523.1921381645329 159.83 0.17575 155.03 154.91 155.08 -4.7952 6 4 2 0 0 0 0.5179 1 31775 31775 0.043787 0.035511 1 1197700 + 6193 14954 3741 3745 6524 6524 -0.14980536835059866 DEPDKVGEKY 10 Unmodified _DEPDKVGEKY_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-3|VPS13A REV__nc|ENSG00000197969|Q96RL7-3|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.26025390625 2 590.280043 1178.54553 NaN NaN NaN NaN NaN NaN NaN 106.63 1 102.54 102.04 103.04 -4.0913 0 0 0 0.22588 1 20503 20503 10.074 0.72649 1 + 6194 19379 3742 3746 6525 6525 -0.03659793698352587 DEPDSVVI 8 Unmodified _DEPDSVVI_ 0 0 0 REV__nc|ENSG00000065243|Q16513-3|PKN2 REV__nc|ENSG00000065243|Q16513-3|PKN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2153625488281 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 121.1 1 121.1 120.6 121.6 0 0 0 0 0.21486 1 23869 23869 10.183 0 1 + 6195 14183 3743 3747 6526 6526 -0.028581933643749835 DEPESVHQC 9 Unmodified _DEPESVHQC_ 0 0 0 REV__ENSG00000136929|ENST00000616898|HEMGN REV__ENSG00000136929|ENST00000616898|HEMGN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2789916992188 2 522.208563 1042.40257 0.0069602 3.6347E-06 0.17894 9.3442E-05 0.1859 9.7077E-05 522.710790006612 53.572 0.75345 50.477 50.139 50.893 -3.0954 62 21 5 0 0 0 0.87511 1 9966 9966 1.6526 1.1943 1 4871900 + 6196 16362 3744 3748 6527 6527 -0.11693124361249829 DEPHAILY 8 Unmodified _DEPHAILY_ 0 0 0 REV__ENST00000242848.8_2_13:46619177-46626639:-|nuORF REV__ENST00000242848.8_2_13:46619177-46626639:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7425537109375 2 479.23745 956.460347 0.025011 1.1986E-05 0.2129 0.00010203 0.23791 0.00011402 479.23758346700214 81.603 0.65237 78.046 77.655 78.307 -3.557 31 18 2 0 0 0 0.50973 1 15980 15980 40.449 0.49126 1 1994400 + 6197 20091 3745 3749 6528 6528 -0.019624943735152556 DEPHAILY 8 Unmodified _DEPHAILY_ 0 0 0 REV__ENST00000242848.8_2_13:46619177-46626639:-|nuORF REV__ENST00000242848.8_2_13:46619177-46626639:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7222900390625 2 479.23745 956.460347 0.041327 1.9806E-05 0.41166 0.00019728 0.45299 0.00021709 479.2375732246537 81.765 0.82379 77.926 77.508 78.331 -3.8392 33 23 2 0 0 0 0.40947 1 15536 15536 32.117 0 1 1232000 + 6198 20091 3745 3749 6529 6529 -0.019624943735152556 DEPHAILY 8 Unmodified _DEPHAILY_ 0 0 0 REV__ENST00000242848.8_2_13:46619177-46626639:-|nuORF REV__ENST00000242848.8_2_13:46619177-46626639:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7314453125 2 479.23745 956.460347 -0.18836 -9.0271E-05 0.36998 0.00017731 0.18162 8.7039E-05 479.2376198099795 81.612 0.69931 77.924 77.523 78.223 -3.6879 27 19 2 0 0 0 0.67678 1 15523 15523 26.341 2.3207 1 1431200 + 6199 20091 3745 3749 6530 6530 -0.019624943735152556 DEPHASTVT 9 Unmodified _DEPHASTVT_ 0 0 0 REV__nc|ENSG00000211747|A0A075B6N2|TRBV20-1 REV__nc|ENSG00000211747|A0A075B6N2|TRBV20-1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7210998535156 2 478.719621 955.42469 NaN NaN NaN NaN NaN NaN NaN 112.64 1 108.37 107.87 108.87 -4.2725 0 0 0 0.22621 1 21688 21688 15.847 3.3156 1 + 6200 24254 3746 3750 6531 6531 -0.054805766211757145 DEPHASTVT 9 Unmodified _DEPHASTVT_ 0 0 0 REV__nc|ENSG00000211747|A0A075B6N2|TRBV20-1 REV__nc|ENSG00000211747|A0A075B6N2|TRBV20-1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72174072265625 2 478.719621 955.42469 NaN NaN NaN NaN NaN NaN NaN 141.17 1 136.3 135.8 136.8 -4.8678 0 0 0 0.23508 1 27239 27239 10.824 1.4765 1 + 6201 24254 3746 3750 6532 6532 -0.054805766211757145 DEPHLYSLI 9 Unmodified _DEPHLYSLI_ 0 0 0 REV__PER3|p.H914Dfs*28|1|0.08|ENSG00000049246|chr1:7827691-7827692|-/TGATATC|frameshift_variant REV__PER3|p.H914Dfs*28|1|0.08|ENSG00000049246|chr1:7827691-7827692|-/TGATATC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7776489257812 2 543.776939 1085.53933 0.52399 0.00028493 -0.4501 -0.00024475 0.073888 4.0179E-05 543.77669083001 117.96 0.53789 113.55 113.24 113.78 -4.4088 26 14 2 0 0 0 0.35443 1 22675 22675 28.487 3.6053 1 1190600 + 6202 14078 3747 3751 6533 6533 -2.2671392343909247E-05 DEPHSKDE 8 Unmodified _DEPHSKDE_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72198486328125 2 478.701429 955.388304 NaN NaN NaN NaN NaN NaN NaN 78.949 1 78.949 78.449 79.449 0 0 0 0 0.20462 1 15366 15366 21.747 3.6117 1 6203 217 3748 3752 6534 6534 -0.09117453517899321 DEPIELSI 8 Unmodified _DEPIELSI_ 0 0 0 REV__tr|U7SZ55|U7SZ55_FUSNUHicB-likeantitoxinoftoxin-antitoxinsystemdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00850PE=4SV=1 REV__tr|U7SZ55|U7SZ55_FUSNUHicB-likeantitoxinoftoxin-antitoxinsystemdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00850PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2381286621094 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 63.713 1 63.713 63.213 64.213 0 0 0 0 0.21452 1 12254 12254 13.508 1.8676 1 + 6204 25240 3749 3753 6535 6535 -0.0009733381323258072 DEPKKLCP 8 Unmodified _DEPKKLCP_ 0 0 0 REV__ENSG00000182601|ENST00000331351|HS3ST4 REV__ENSG00000182601|ENST00000331351|HS3ST4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2391357421875 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 76.686 1 76.686 76.186 77.186 0 0 0 0 0.20462 1 14902 14902 21.747 0.87544 1 + 6205 18790 3750 3754 6536 6536 0.0017073627144554848 DEPLLDKIT 9 Unmodified _DEPLLDKIT_ 0 0 0 REV__UNC79|p.K1493Sfs*12|1|0.52|ENSG00000133958|chr14:93621704-93621704|A/-|frameshift_variant REV__UNC79|p.K1493Sfs*12|1|0.52|ENSG00000133958|chr14:93621704-93621704|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2575073242188 2 522.284597 1042.55464 NaN NaN NaN NaN NaN NaN NaN 38.21 1 38.21 37.71 38.71 0 0 0 0 0.23508 1 7082 7082 7.2892 1.5574 1 + 6206 16183 3751 3755 6537 6537 0.03506599657953302 DEPLYSFCI 9 Unmodified _DEPLYSFCI_ 0 0 0 ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7846069335938 2 543.74425 1085.47395 NaN NaN NaN NaN NaN NaN NaN 125.76 1 121.16 120.66 121.66 -4.5984 0 0 0 0.23508 1 24793 24793 11.64 0 1 6207 3057 3752 3756 6538 6538 -0.06537004656593126 DEPNKKATY 9 Unmodified _DEPNKKATY_ 0 0 0 ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.264892578125 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 106.62 1 106.62 106.12 107.12 0 0 0 0 0.23508 1 20962 20962 12.532 0 1 6208 4211 3753 3757 6539 6539 -0.015837416616705013 DEPNRFTY 8 Unmodified _DEPNRFTY_ 0 0 0 REV__ENSG00000179407|ENST00000319153|DNAJB8 REV__ENSG00000179407|ENST00000319153|DNAJB8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2730102539062 2 521.235439 1040.45632 -0.097814 -5.0984E-05 0.29824 0.00015545 0.20042 0.00010447 521.2354839935897 60.065 0.49312 60.065 59.821 60.314 0 30 13 3 0 0 0 0.73426 1 11516 11516 9.3474 1.4373 1 3110900 + 6209 18656 3754 3758 6540 6540 -0.062285838672323734 DEPNRFTY 8 Unmodified _DEPNRFTY_ 0 0 0 REV__ENSG00000179407|ENST00000319153|DNAJB8 REV__ENSG00000179407|ENST00000319153|DNAJB8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.235439 1040.45632 -0.097814 -5.0984E-05 0.29824 0.00015545 0.20042 0.00010447 521.2354839935897 60.065 0.49312 60.065 59.821 60.314 0 -0.16192 0.00012014 NaN 9.3474 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3110900 + 6210 18656 3754 3758 -0.062285838672323734 DEPNRFTY 8 Unmodified _DEPNRFTY_ 0 0 0 REV__ENSG00000179407|ENST00000319153|DNAJB8 REV__ENSG00000179407|ENST00000319153|DNAJB8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.235439 1040.45632 -0.17225 -8.9782E-05 0.12759 6.6506E-05 -0.044656 -2.3276E-05 521.2354546438764 63.339 0.67409 60.341 59.951 60.625 -2.9975 0.11422 -5.7755E-05 NaN 9.3474 41 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2731700 + 6211 18656 3754 3758 -0.062285838672323734 DEPNRFTY 8 Unmodified _DEPNRFTY_ 0 0 0 REV__ENSG00000179407|ENST00000319153|DNAJB8 REV__ENSG00000179407|ENST00000319153|DNAJB8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.235439 1040.45632 -0.54252 -0.00028278 0.76367 0.00039805 0.22115 0.00011527 521.2357855919919 63.691 0.73129 60.276 59.937 60.669 -3.4158 0.048245 0.00060534 NaN 9.3474 38 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1917100 + 6212 18656 3754 3758 -0.062285838672323734 DEPVASVQA 9 Unmodified _DEPVASVQA_ 0 0 0 nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1 nc|ENSG00000171603|O94985-2|CLSTN1 nc|ENSG00000171603|O94985-2|CLSTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2243957519531 2 458.224539 914.434526 0.38586 0.00017681 -0.030159 -1.382E-05 0.3557 0.00016299 458.22445027359413 39.247 0.61782 39.247 38.957 39.575 0 21 17 2 0 0 0 0.44262 1 7311 7311 23.148 2.2772 1 581580 6213 6156 3755 3759 6541 6541 -0.026113886158100286 DEPVASVQA 9 Unmodified _DEPVASVQA_ 0 0 0 nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1 nc|ENSG00000171603|O94985-2|CLSTN1 nc|ENSG00000171603|O94985-2|CLSTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2247009277344 2 458.224539 914.434526 -0.11153 -5.1107E-05 0.32918 0.00015084 0.21765 9.973E-05 458.22479740334745 41.964 0.56429 39.313 38.9 39.464 -2.651 27 15 2 0 0 0 0.46541 2 7487 7479;7487 21.747 2.3076 1 734300 6214 6156 3755 3759 6542;6543 6543 -0.026113886158100286 DEPVASVQA 9 Unmodified _DEPVASVQA_ 0 0 0 nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1 nc|ENSG00000171603|O94985-2|CLSTN1 nc|ENSG00000171603|O94985-2|CLSTN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2242431640625 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 41.578 1 39.089 38.589 39.589 -2.4896 0 0 0 0.22621 1 7464 7464 15.847 1.0089 1 6215 6156 3755 3759 6544 6544 -0.026113886158100286 DEQEVINF 8 Unmodified _DEQEVINF_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;RQCD1|p.E162Nfs*14|1|0.27|ENSG00000144580|chr2:218587638-218587639|AG/-|frameshift_variant nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 497.81005859375 2 497.229822 992.445091 0.17973 8.9369E-05 0.080909 4.023E-05 0.26064 0.0001296 497.22981319145526 113.86 0.81084 113.86 113.45 114.26 0 53 22 3 0 0 0 8448 1 22416 22416 64.86 45.47 1 4394500 6216 4561 3756 3760 6545 6545 -0.051434059613711725 DEQEVINF 8 Unmodified _DEQEVINF_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;RQCD1|p.E162Nfs*14|1|0.27|ENSG00000144580|chr2:218587638-218587639|AG/-|frameshift_variant nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 497.229822 992.445091 0.27848 0.00013847 0.28265 0.00014054 0.56113 0.00027901 497.22994803211634 118.52 0.93833 114.02 113.49 114.43 -4.502 0.068901 0.00011023 NaN 64.86 60 26 3 NaN NaN NaN NaN 0 NaN NaN 0 4651500 6217 4561 3756 3760 -0.051434059613711725 DEQEVINF 8 Unmodified _DEQEVINF_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;RQCD1|p.E162Nfs*14|1|0.27|ENSG00000144580|chr2:218587638-218587639|AG/-|frameshift_variant nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 497.229822 992.445091 0.38737 0.00019261 0.15586 7.7497E-05 0.54322 0.00027011 497.22989172611074 118.59 0.75743 113.98 113.63 114.39 -4.6106 0.029252 -1.5862E-05 NaN 64.86 50 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3885500 6218 4561 3756 3760 -0.051434059613711725 DEQEVINF 8 Unmodified _DEQEVINF_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;RQCD1|p.E162Nfs*14|1|0.27|ENSG00000144580|chr2:218587638-218587639|AG/-|frameshift_variant nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 497.229822 992.445091 0.25209 0.00012535 0.15753 7.8328E-05 0.40962 0.00020368 497.22991125058286 118.35 0.85187 113.95 113.5 114.35 -4.4088 -0.0057858 -1.42E-05 NaN 64.86 52 23 3 NaN NaN NaN NaN 0 NaN NaN 0 4011500 6219 4561 3756 3760 -0.051434059613711725 DEQFSFDEY 9 Unmodified _DEQFSFDEY_ 0 0 0 REV__UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant REV__UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2565307617188 2 590.227476 1178.4404 NaN NaN NaN NaN NaN NaN NaN 142.62 1 142.62 142.12 143.12 0 0 0 0 0.20628 1 28437 28437 21.747 3.6003 1 + 6220 17125 3757 3761 6546 6546 -0.14168334894793588 DEQFVVKAF 9 Unmodified _DEQFVVKAF_ 0 0 0 ENSG00000141642|ENST00000269466|ELAC1;ELAC1|p.R179H|1|0.1|ENSG00000141642|chr18:50984474-50984474|G/A|missense_variant ENSG00000141642|ENST00000269466|ELAC1 ENSG00000141642|ENST00000269466|ELAC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2769775390625 2 541.779482 1081.54441 0.31864 0.00017263 0.12279 6.6525E-05 0.44143 0.00023916 541.7794250514529 127.04 0.76647 127.04 126.68 127.44 0 46 21 3 0 0 0 0.27332 1 25114 25114 43.772 34.389 1 7684900 6221 4390 3758 3762 6547 6547 0.0069003672338112665 DEQFVVKAF 9 Unmodified _DEQFVVKAF_ 0 0 0 ENSG00000141642|ENST00000269466|ELAC1;ELAC1|p.R179H|1|0.1|ENSG00000141642|chr18:50984474-50984474|G/A|missense_variant ENSG00000141642|ENST00000269466|ELAC1 ENSG00000141642|ENST00000269466|ELAC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2791748046875 2 541.779482 1081.54441 0.19895 0.00010779 0.31012 0.00016802 0.50907 0.0002758 541.7795063740411 131.64 0.87857 127 126.53 127.41 -4.6399 60 24 3 0 0 0 0.091344 1 25940 25940 76.825 61.987 1 7979200 6222 4390 3758 3762 6548 6548 0.0069003672338112665 DEQFVVKAF 9 Unmodified _DEQFVVKAF_ 0 0 0 ENSG00000141642|ENST00000269466|ELAC1;ELAC1|p.R179H|1|0.1|ENSG00000141642|chr18:50984474-50984474|G/A|missense_variant ENSG00000141642|ENST00000269466|ELAC1 ENSG00000141642|ENST00000269466|ELAC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.283935546875 2 541.779482 1081.54441 0.079821 4.3246E-05 0.3678 0.00019927 0.44762 0.00024251 541.7795962401765 131.85 0.86082 127 126.53 127.39 -4.8527 56 24 3 0 0 0 0.078741 1 25325 25325 79.596 64.758 1 8279600 6223 4390 3758 3762 6549 6549 0.0069003672338112665 DEQFVVKAF 9 Unmodified _DEQFVVKAF_ 0 0 0 ENSG00000141642|ENST00000269466|ELAC1;ELAC1|p.R179H|1|0.1|ENSG00000141642|chr18:50984474-50984474|G/A|missense_variant ENSG00000141642|ENST00000269466|ELAC1 ENSG00000141642|ENST00000269466|ELAC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2818603515625 2 541.779482 1081.54441 0.27248 0.00014762 0.15549 8.4242E-05 0.42797 0.00023187 541.7794014737508 131.79 0.88037 126.99 126.61 127.49 -4.799 49 24 3 0 0 0 0.12694 1 25362 25362 67.838 57.014 1 8125500 6224 4390 3758 3762 6550 6550 0.0069003672338112665 DEQGRFLP 8 Unmodified _DEQGRFLP_ 0 0 0 REV__ENSG00000133048|ENST00000255409|CHI3L1 REV__ENSG00000133048|ENST00000255409|CHI3L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2404479980469 2 481.240524 960.466495 0.010224 4.9203E-06 0.36844 0.00017731 0.37867 0.00018223 481.2405605685041 35.432 0.55369 35.432 35.203 35.757 0 24 15 2 0 0 0 0.68128 1 6552 6552 16.942 3.0362 1 946150 + 6225 16151 3759 3763 6551 6551 -0.015319761420073519 DEQGRSLLY 9 Unmodified _DEQGRSLLY_ 0 0 0 REV__ENST00000498159.1_1_3:157287125-157287392:+|nuORF REV__ENST00000498159.1_1_3:157287125-157287392:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2607421875 2 540.769645 1079.52474 0.18429 9.9656E-05 1.2752 0.00068958 1.4595 0.00078923 540.7701380347883 132.07 0.59514 127.43 127.06 127.66 -4.6399 25 16 2 0 0 0 0.46882 1 26006 26006 21.537 0.66577 1 2279800 + 6226 22410 3760 3764 6552 6552 -0.011843392873743142 DEQGRSLLY 9 Unmodified _DEQGRSLLY_ 0 0 0 REV__ENST00000498159.1_1_3:157287125-157287392:+|nuORF REV__ENST00000498159.1_1_3:157287125-157287392:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2708740234375 2 540.769645 1079.52474 0.1234 6.6729E-05 0.88118 0.00047651 1.0046 0.00054324 540.7700615219393 132.28 0.91515 127.42 127.01 127.92 -4.8527 40 25 2 0 0 0 0.36931 3 25346 25325;25346;25361 27.629 10.687 1 3599500 + 6227 22410 3760 3764 6553;6554;6555 6554 -0.011843392873743142 DEQGRSLLY 9 Unmodified _DEQGRSLLY_ 0 0 0 REV__ENST00000498159.1_1_3:157287125-157287392:+|nuORF REV__ENST00000498159.1_1_3:157287125-157287392:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.25927734375 2 540.769645 1079.52474 0.2724 0.0001473 0.64501 0.0003488 0.91741 0.00049611 540.7703392524214 132.16 0.57677 127.36 127.08 127.66 -4.799 24 16 2 0 0 0 0.46882 2 25423 25423;25436 21.537 4.5947 1 2106900 + 6228 22410 3760 3764 6556;6557 6556 -0.011843392873743142 DEQHQSKL 8 Unmodified _DEQHQSKL_ 0 0 0 REV__NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant REV__NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 492.2787170410156 2 492.740888 983.467223 0.64895 0.00031977 -0.50009 -0.00024642 0.14886 7.3349E-05 492.7406996944602 120.77 0.27321 116.13 116.01 116.28 -4.645 9 7 2 0 0 0 0.87195 1 23163 23163 0.62683 0 1 416480 + 6229 17661 3761 3765 6558 6558 -0.025171814929535685 DEQHQSKL 8 Unmodified _DEQHQSKL_ 0 0 0 REV__NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant REV__NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 492.740888 983.467223 0.13125 6.4674E-05 1.9944 0.00098273 2.1257 0.0010474 492.7431559780877 120.91 0.3242 116.44 116.34 116.66 -4.4736 0.15318 0.00091692 NaN 0.62683 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 602460 + 6230 17661 3761 3765 -0.025171814929535685 DEQLLTNVL 9 Unmodified _DEQLLTNVL_ 0 0 0 CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2 CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2706298828125 2 522.782222 1043.54989 -0.017506 -9.152E-06 0.37893 0.0001981 0.36143 0.00018895 522.7821892781318 161.3 0.80391 156.51 156.11 156.91 -4.7952 48 22 3 0 0 0 0.19141 1 32081 32081 49.554 31.408 1 3666900 6231 718 3762 3766 6559 6559 0.029857155152058112 DEQLLTNVL 9 Unmodified _DEQLLTNVL_ 0 0 0 CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2 CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2733764648438 2 522.782222 1043.54989 -0.46586 -0.00024354 0.41027 0.00021448 -0.055589 -2.9061E-05 522.7823559876347 162.04 0.57935 156.89 156.48 157.06 -5.1438 24 16 2 0 0 0 0.29058 1 31498 31498 36.81 27.897 1 2875400 6232 718 3762 3766 6560 6560 0.029857155152058112 DEQLLTNVL 9 Unmodified _DEQLLTNVL_ 0 0 0 CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2 CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2791137695312 2 522.782222 1043.54989 0.51054 0.0002669 -0.16281 -8.5112E-05 0.34774 0.00018179 522.7820967488876 162.08 0.58632 156.89 156.47 157.06 -5.1878 24 16 2 0 0 0 0.19141 1 31458 31458 49.554 31.408 1 3212400 6233 718 3762 3766 6561 6561 0.029857155152058112 DEQLVQVK 8 Unmodified _DEQLVQVK_ 0 0 0 nc|ENSG00000152969|Q96N16-6|JAKMIP1;nc|ENSG00000152969|Q96N16-3|JAKMIP1;nc|ENSG00000152969|Q96N16-7|JAKMIP1;nc|ENSG00000152969|Q96N16-4|JAKMIP1;nc|ENSG00000152969|Q96N16|JAKMIP1;nc|ENSG00000152969|Q96N16-5|JAKMIP1;JAKMIP1|p.L821Cfs*5|1|0.31|ENSG00000152969|chr4:6026262-6026262|A/-|frameshift_variant;ENSG00000152969|ENST00000409021|JAKMIP1 nc|ENSG00000152969|Q96N16-6|JAKMIP1 nc|ENSG00000152969|Q96N16-6|JAKMIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7688903808594 2 479.763832 957.513111 0.31321 0.00015027 0.44197 0.00021204 0.75517 0.00036231 479.7641536101503 47.531 1.4721 47.531 46.946 48.418 0 131 41 5 0 0 0 0.62642 1 9003 9003 20.454 1.1966 1 151620000 6234 4950 3763 3767 6562 6562 0.032654636892857525 DEQNIFSLTL 10 Unmodified _DEQNIFSLTL_ 0 0 0 tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2587890625 2 590.298236 1178.58192 NaN NaN NaN NaN NaN NaN NaN 130.4 1 125.63 125.13 126.13 -4.7725 0 0 0 0.22588 1 25096 25096 13.042 0 1 6235 26032 3764 3768 6563 6563 -0.00022916801685823884 DEQPKHQPD 9 Unmodified _DEQPKHQPD_ 0 0 0 nc|ENSG00000122376|Q86V20|SHLD2;ENSG00000122376|ENST00000298786|SHLD2 nc|ENSG00000122376|Q86V20|SHLD2 nc|ENSG00000122376|Q86V20|SHLD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7761840820312 2 547.249077 1092.4836 0.33905 0.00018554 -1.4935 -0.00081732 -1.1545 -0.00063177 547.2488852715783 22.434 0.80485 22.434 22.155 22.96 0 30 22 2 0 0 0 0.73268 1 3752 3752 13.042 4.4492 1 460080 6236 3220 3765 3769 6564 6564 -0.058941003268500936 DEQPKHQPD 9 Unmodified _DEQPKHQPD_ 0 0 0 nc|ENSG00000122376|Q86V20|SHLD2;ENSG00000122376|ENST00000298786|SHLD2 nc|ENSG00000122376|Q86V20|SHLD2 nc|ENSG00000122376|Q86V20|SHLD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7764892578125 2 547.249077 1092.4836 1.1077 0.0006062 -2.9329 -0.001605 -1.8252 -0.00099883 547.2486055070732 23.906 0.9707 22.353 22.117 23.088 -1.5532 38 27 2 0 0 0 0.62921 1 4100 4100 18.146 9.9908 1 580370 6237 3220 3765 3769 6565 6565 -0.058941003268500936 DEQPREVTL 9 Unmodified _DEQPREVTL_ 0 0 0 REV__ENST00000568662.1_1_16:90072745-90075357:-|nuORF REV__ENST00000568662.1_1_16:90072745-90075357:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7759399414062 2 543.774928 1085.5353 0.32572 0.00017712 1.8405 0.0010008 2.1662 0.0011779 543.7761427732092 71.708 0.74193 68.08 67.847 68.589 -3.6275 49 20 3 0 0 0 0.57447 1 13547 13547 14.838 1.7958 1 3646900 + 6238 13826 3766 3770 6566 6566 -0.004043566329301029 DEQRRWPG 8 Unmodified _DEQRRWPG_ 0 0 0 ENSG00000149150|ENST00000278426|SLC43A1;nc|ENSG00000149150|O75387-2|SLC43A1 ENSG00000149150|ENST00000278426|SLC43A1 ENSG00000149150|ENST00000278426|SLC43A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2572021484375 2 522.254497 1042.49444 NaN NaN NaN NaN NaN NaN NaN 126.99 1 126.99 126.49 127.49 0 0 0 0 0.21323 1 25065 25065 14.582 2.9414 1 6239 4771 3767 3771 6567 6567 -0.02510653161925802 DEQSLKKI 8 Unmodified _DEQSLKKI_ 0 0 0 ENSG00000153930|ENST00000682825|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2360534667969 2 480.771657 959.528761 0.12468 5.9944E-05 0.090741 4.3626E-05 0.21542 0.00010357 480.7715377890089 37.095 0.37644 34.747 34.447 34.823 -2.3479 16 10 2 0 0 0 0.91917 1 6547 6547 20.454 0 1 544410 6240 4986 3768 3772 6568 6568 0.04737750206345481 DEQSPKES 8 Unmodified _DEQSPKES_ 0 0 0 REV__ENSG00000164615|ENST00000297156|CAMLG REV__ENSG00000164615|ENST00000297156|CAMLG MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.22991943359375 2 460.203804 918.393055 NaN NaN NaN NaN NaN NaN NaN 101.77 1 97.745 97.245 98.245 -4.0212 0 0 0 0.21486 1 19555 19555 8.5933 0 1 + 6241 17695 3769 3773 6569 6569 -0.06940569375126415 DEQSQMQNWEE 11 Unmodified _DEQSQMQNWEE_ 0 0 0 REV__ENST00000472285.1_1_1:28136783-28144445:+|nuORF REV__ENST00000472285.1_1_1:28136783-28144445:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 475.20147705078125 3 475.185867 1422.53577 NaN NaN NaN NaN NaN NaN NaN 122.23 1 117.68 117.18 118.18 -4.5476 0 0 0 0.22632 1 24095 24095 1.4551 1.4237 1 + 6242 15529 3770 3774 6570 6570 -0.15859349766060404 DEQSVSKY 8 Unmodified _DEQSVSKY_ 0 0 0 REV__FAM163B|p.R120C|1|0.29|ENSG00000196990|chr9:133579165-133579165|G/A|missense_variant REV__FAM163B|p.R120C|1|0.29|ENSG00000196990|chr9:133579165-133579165|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7336120605469 2 478.221997 954.429441 -0.23091 -0.00011043 0.46485 0.0002223 0.23395 0.00011188 478.22218828217626 35.003 0.56136 32.609 32.318 32.88 -2.3938 36 15 3 0 0 0 0.73426 1 6381 6381 9.3474 0.75416 1 4437300 + 6243 19293 3771 3775 6571 6571 -0.04959692478416855 DEQSVSKY 8 Unmodified _DEQSVSKY_ 0 0 0 REV__FAM163B|p.R120C|1|0.29|ENSG00000196990|chr9:133579165-133579165|G/A|missense_variant REV__FAM163B|p.R120C|1|0.29|ENSG00000196990|chr9:133579165-133579165|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7393798828125 2 478.221997 954.429441 -0.23091 -0.00011043 0.46485 0.0002223 0.23395 0.00011188 478.22218828217626 35.003 0.56136 32.609 32.318 32.88 -2.3938 36 15 3 0 0 0 0.97173 1 6482 6482 18.135 1.1927 1 4437300 + 6244 19293 3771 3775 6572 6572 -0.04959692478416855 DEQSYTKLFN 10 Unmodified _DEQSYTKLFN_ 0 0 0 REV__OR4A16|p.E230D|1|0.27|ENSG00000181961|chr11:55343890-55343890|G/T|missense_variant REV__OR4A16|p.E230D|1|0.27|ENSG00000181961|chr11:55343890-55343890|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76123046875 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 74.317 1 70.723 70.223 71.223 -3.594 0 0 0 0.22588 1 14114 14114 8.7454 1.4562 1 + 6245 24407 3772 3776 6573 6573 -0.039961048070381366 DEQTRPGQL 9 Unmodified _DEQTRPGQL_ 0 0 0 REV__ENST00000564333.1_1_16:2487101-2487449:+|nuORF REV__ENST00000564333.1_1_16:2487101-2487449:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2711181640625 2 522.259445 1042.50434 NaN NaN NaN NaN NaN NaN NaN 155.06 1 149.77 149.27 150.27 -5.2854 0 0 0 0.23508 1 30072 30072 7.2892 0 1 + 6246 23089 3773 3777 6574 6574 -0.015215099471788562 DEQVFYIQY 9 Unmodified _DEQVFYIQY_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2875366210938 2 602.779679 1203.5448 1.163 0.00070106 -0.27978 -0.00016865 0.88326 0.00053241 602.7793676244411 157.18 0.63963 152.39 151.95 152.59 -4.7885 29 17 2 0 0 0 0.14376 1 31263 31263 54.068 49.353 1 3182000 6247 3249 3774 3778 6575 6575 -0.0488258834741373 DEQVFYIQY 9 Unmodified _DEQVFYIQY_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.284912109375 2 602.779679 1203.5448 0.51457 0.00031017 -0.1441 -8.6859E-05 0.37047 0.00022331 603.2810663657781 157.63 0.74646 152.34 152.04 152.79 -5.2854 39 20 3 0 0 0 0.74858 1 30647 30647 17.113 3.605 1 4443900 6248 3249 3774 3778 6576 6576 -0.0488258834741373 DEQVFYIQY 9 Unmodified _DEQVFYIQY_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3003540039062 2 602.779679 1203.5448 0.50238 0.00030282 -0.82338 -0.00049631 -0.321 -0.00019349 602.7794947942481 157.58 0.82201 152.31 151.87 152.69 -5.2712 41 22 3 0 0 0 0.60663 1 30537 30537 32.786 24.876 1 2630200 6249 3249 3774 3778 6577 6577 -0.0488258834741373 DEQVLPHNL 9 Unmodified _DEQVLPHNL_ 0 0 0 ENSG00000179988|ENST00000406217|PSTK;ENST00000465232.5_1_10:124742932-124749886:+|nuORF ENSG00000179988|ENST00000406217|PSTK ENSG00000179988|ENST00000406217|PSTK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2623901367188 2 532.772188 1063.52982 -0.07103 -3.7843E-05 0.20115 0.00010716 0.13012 6.9322E-05 532.7722664251648 90.544 1.4778 90.544 89.913 91.391 0 115 41 4 0 0 0 0.016216 3 17781 17781;17796;17845 96.111 33.813 1 67623000 6250 6653 3775 3779 6578;6579;6580 6578 0.0005996457521177945 DEQVLPHNL 9 Unmodified _DEQVLPHNL_ 0 0 0 ENSG00000179988|ENST00000406217|PSTK;ENST00000465232.5_1_10:124742932-124749886:+|nuORF ENSG00000179988|ENST00000406217|PSTK ENSG00000179988|ENST00000406217|PSTK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2731323242188 2 532.772188 1063.52982 0.081915 4.3642E-05 -0.091298 -4.8641E-05 -0.0093833 -4.9992E-06 532.7721942618671 94.288 1.3795 90.444 90.061 91.44 -3.844 101 39 4 0 0 0 0.010349 2 18223 18204;18223 103.75 35.668 1 53789000 6251 6653 3775 3779 6581;6582 6582 0.0005996457521177945 DEQVLQRDF 9 Unmodified _DEQVLQRDF_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3275146484375 2 575.280377 1148.5462 0.17362 9.9879E-05 -0.207 -0.00011908 -0.033378 -1.9201E-05 575.2804019520548 87.869 0.63235 84.119 83.763 84.396 -3.7501 36 17 4 0 0 0 0.16539 1 16798 16798 41.956 15.687 1 2908000 6252 1583 3776 3780 6583 6583 -0.022129542586753814 DEQVLQRDF 9 Unmodified _DEQVLQRDF_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.280377 1148.5462 0.41448 0.00023844 -0.16638 -9.5716E-05 0.2481 0.00014273 575.2803039428676 84.054 0.5927 84.054 83.615 84.208 0 -0.02104 2.646E-05 NaN 41.956 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1860300 6253 1583 3776 3780 -0.022129542586753814 DEQVLQRDF 9 Unmodified _DEQVLQRDF_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 575.280377 1148.5462 -0.093627 -5.3862E-05 -0.21557 -0.00012401 -0.3092 -0.00017787 575.2804386251175 87.844 0.69126 84.052 83.721 84.412 -3.7926 -0.022932 -3.0134E-05 NaN 41.956 36 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2283100 6254 1583 3776 3780 -0.022129542586753814 DERAIEAL 8 Unmodified _DERAIEAL_ 0 0 0 nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2384948730469 2 458.740357 915.46616 -0.12653 -5.8044E-05 0.29417 0.00013495 0.16765 7.6906E-05 458.7404595073805 76.412 0.91359 72.996 72.541 73.455 -3.4151 62 25 3 0 0 0 0.11605 1 14916 14916 88.954 0.050263 1 18847000 6255 3915 3777 3781 6584 6584 0.005046041381433497 DERAIEAL 8 Unmodified _DERAIEAL_ 0 0 0 nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23876953125 2 458.740357 915.46616 0.017023 7.809E-06 0.26662 0.00012231 0.28364 0.00013012 458.7404196185602 76.745 0.7584 72.978 72.643 73.401 -3.7664 60 21 3 0 0 0 0.11605 1 14536 14536 88.954 0.050263 1 15183000 6256 3915 3777 3781 6585 6585 0.005046041381433497 DERAKIPDP 9 Unmodified _DERAKIPDP_ 0 0 0 nc|ENSG00000153132|O14967-2|CLGN;CLGN|p.H500Tfs*2|1|0.22|ENSG00000153132|chr4:140392372-140392373|-/T|frameshift_variant;ENSG00000153132|ENST00000325617|CLGN;CLGN|p.N381Ifs*24|1|0.22|ENSG00000153132|chr4:140395823-140395826|TAGT/-|frameshift_variant;CLGN|p.I429Lfs*25|1|0.04|ENSG00000153132|chr4:140393905-140393906|AT/-|frameshift_variant nc|ENSG00000153132|O14967-2|CLGN nc|ENSG00000153132|O14967-2|CLGN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.259033203125 2 520.772188 1039.52982 0.22797 0.00011872 -0.090161 -4.6954E-05 0.13781 7.1766E-05 520.7720204426279 23.154 0.51654 23.154 22.892 23.409 0 40 14 4 0 0 0 0.58804 2 3943 3943;3956 13.906 0.86358 1 6119500 6257 577 3778 3782 6586;6587 6586 0.011639645752211436 DERAKIPDP 9 Unmodified _DERAKIPDP_ 0 0 0 nc|ENSG00000153132|O14967-2|CLGN;CLGN|p.H500Tfs*2|1|0.22|ENSG00000153132|chr4:140392372-140392373|-/T|frameshift_variant;ENSG00000153132|ENST00000325617|CLGN;CLGN|p.N381Ifs*24|1|0.22|ENSG00000153132|chr4:140395823-140395826|TAGT/-|frameshift_variant;CLGN|p.I429Lfs*25|1|0.04|ENSG00000153132|chr4:140393905-140393906|AT/-|frameshift_variant nc|ENSG00000153132|O14967-2|CLGN nc|ENSG00000153132|O14967-2|CLGN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 520.772188 1039.52982 0.76436 0.00039806 -0.47241 -0.00024602 0.29196 0.00015204 520.7718971427458 24.523 1.1122 22.875 22.157 23.269 -1.6482 -0.1396 -0.00019103 NaN 13.906 53 31 3 NaN NaN NaN NaN 0 NaN NaN 0 4876600 6258 577 3778 3782 0.011639645752211436 DERASLRCRRR 11 Unmodified _DERASLRCRRR_ 0 0 0 REV__ENST00000577339.5_1_17:42976711-42978377:+|nuORF REV__ENST00000577339.5_1_17:42976711-42978377:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 472.7873229980469 3 473.256625 1416.74805 NaN NaN NaN NaN NaN NaN NaN 117.36 1 112.88 112.38 113.38 -4.486 0 0 0 0.22632 1 23137 23137 0.58532 0 1 + 6259 23215 3779 3783 6588 6588 0.05634250945877284 DERDCPEV 8 Unmodified _DERDCPEV_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1;LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7746887207031 2 481.697832 961.38111 NaN NaN NaN NaN NaN NaN NaN 32.277 1 30.25 29.75 30.75 -2.0264 0 0 0 0.21486 1 5594 5594 5.2307 0 1 6260 3265 3780 3784 6589 6589 -0.10112509389978186 DERDRAEA 8 Unmodified _DERDRAEA_ 0 0 0 nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11 nc|ENSG00000133392|P35749-4|MYH11 nc|ENSG00000133392|P35749-4|MYH11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7690124511719 2 481.22032 960.426087 0.65272 0.0003141 -3.8094 -0.0018331 -3.1566 -0.001519 481.2199888445904 104.43 0.77892 100.37 99.983 100.76 -4.0543 60 21 4 0 0 0 0.64512 1 20103 20103 19.257 3.4098 1 4790200 6261 3798 3781 3785 6590 6590 -0.05570942532438039 DEREMVTV 8 Unmodified _DEREMVTV_ 0 0 0 REV__ENST00000377671.7_1_20:18269181-18279006:+|nuORF REV__ENST00000377671.7_1_20:18269181-18279006:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2554016113281 2 489.731674 977.448796 0.11232 5.5008E-05 -1.2661 -0.00062006 -1.1538 -0.00056505 489.7308757450597 47.5 0.56195 44.558 44.41 44.972 -2.9421 21 15 2 0 0 0 0.31517 1 8694 8694 36.044 8.4154 1 743310 + 6262 21103 3782 3786 6591 6591 -0.04083059459162541 DEREREEFY 9 Unmodified _DEREREEFY_ 0 0 0 ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25555419921875 3 424.854558 1271.54184 0.40347 0.00017141 -0.099746 -4.2378E-05 0.30372 0.00012904 424.8544633003622 45.304 0.45992 45.304 45.023 45.483 0 21 12 2 0 0 0 0.84849 1 8503 8503 8.9762 1.4992 1 1007200 6263 1988 3783 3787 6592 6592 -0.08306463472217729 DEREREEFY 9 Unmodified _DEREREEFY_ 0 0 0 ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2543029785156 3 424.854558 1271.54184 -0.015763 -6.6971E-06 0.31779 0.00013502 0.30203 0.00012832 424.85462028734355 48.418 0.60029 45.476 45.144 45.744 -2.9421 25 16 2 0 0 0 0.81016 1 8846 8846 12.873 6.1494 1 2073400 6264 1988 3783 3787 6593 6593 -0.08306463472217729 DEREREEFY 9 Unmodified _DEREREEFY_ 0 0 0 ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2549133300781 3 424.854558 1271.54184 -0.36017 -0.00015302 0.6815 0.00028954 0.32133 0.00013652 424.8547739534451 48.384 0.48918 45.434 45.156 45.646 -2.9499 28 13 3 0 0 0 0.73573 1 8844 8844 20.581 13.858 1 1422200 6265 1988 3783 3787 6594 6594 -0.08306463472217729 DEREREEFY 9 Unmodified _DEREREEFY_ 0 0 0 ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 424.854558 1271.54184 -0.23625 -0.00010037 0.39867 0.00016938 0.16242 6.9005E-05 424.8547193587147 48.396 0.52951 45.527 45.236 45.766 -2.869 0.091973 4.9964E-05 NaN 20.581 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1774200 6266 1988 3783 3787 -0.08306463472217729 DERESDSPF 9 Unmodified _DERESDSPF_ 0 0 0 REV__nc|ENSG00000159208|Q8N365-2|CIART REV__nc|ENSG00000159208|Q8N365-2|CIART MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2637329101562 2 541.225268 1080.43598 0.23123 0.00012515 1.2771 0.00069121 1.5084 0.00081636 541.2258822089659 78.841 0.80978 75.33 74.882 75.692 -3.5102 41 22 3 0 0 0 0.58699 1 15384 15384 32.305 5.4218 1 2977800 + 6267 17364 3784 3788 6595 6595 -0.10101799317703808 DERESDSPF 9 Unmodified _DERESDSPF_ 0 0 0 REV__nc|ENSG00000159208|Q8N365-2|CIART REV__nc|ENSG00000159208|Q8N365-2|CIART MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2635498046875 2 541.225268 1080.43598 0.035856 1.9406E-05 1.4403 0.00077955 1.4762 0.00079895 541.2261226804824 78.999 0.83994 75.323 74.887 75.727 -3.676 40 23 3 0 0 0 0.74655 1 15056 15056 21.747 0 1 2935900 + 6268 17364 3784 3788 6596 6596 -0.10101799317703808 DERFGKLTI 9 Unmodified _DERFGKLTI_ 0 0 0 REV__ENST00000463545.1_1_3:154070629-154071064:-|nuORF REV__ENST00000463545.1_1_3:154070629-154071064:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 104.76 1 104.76 104.26 105.26 0 0 0 0 0.23508 1 20589 20589 4.897 0.95262 1 + 6269 21922 3785 3789 6597 6597 0.0461712798901317 DERFGKLTI 9 Unmodified _DERFGKLTI_ 0 0 0 REV__ENST00000463545.1_1_3:154070629-154071064:-|nuORF REV__ENST00000463545.1_1_3:154070629-154071064:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 110.13 1 105.75 105.25 106.25 -4.3776 0 0 0 0.23508 1 21705 21705 4.897 0.95262 1 + 6270 21922 3785 3789 6598 6598 0.0461712798901317 DERFGKLTI 9 Unmodified _DERFGKLTI_ 0 0 0 REV__ENST00000463545.1_1_3:154070629-154071064:-|nuORF REV__ENST00000463545.1_1_3:154070629-154071064:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 109.23 1 104.78 104.28 105.28 -4.4518 0 0 0 0.23508 1 20963 20963 4.897 0.95262 1 + 6271 21922 3785 3789 6599 6599 0.0461712798901317 DERGIQVV 8 Unmodified _DERGIQVV_ 0 0 0 nc|ENSG00000163918|P35249-2|RFC4;ENST00000494047.5_1_3:186509405-186522502:-|nuORF;ENSG00000163918|ENST00000296273|RFC4 nc|ENSG00000163918|P35249-2|RFC4 nc|ENSG00000163918|P35249-2|RFC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2334899902344 2 458.248349 914.482145 -0.052329 -2.398E-05 0.31324 0.00014354 0.26091 0.00011956 458.2484714751671 61.297 0.7199 61.297 61.013 61.733 0 55 20 3 0 0 0 0.081241 5 11778 11754;11766;11771;11774;11778 74.929 41.417 1 9262000 6272 5481 3786 3790 6600;6601;6602;6603;6604 6604 0.02148310375048368 DERGIQVV 8 Unmodified _DERGIQVV_ 0 0 0 nc|ENSG00000163918|P35249-2|RFC4;ENST00000494047.5_1_3:186509405-186522502:-|nuORF;ENSG00000163918|ENST00000296273|RFC4 nc|ENSG00000163918|P35249-2|RFC4 nc|ENSG00000163918|P35249-2|RFC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2277526855469 2 458.248349 914.482145 -0.057808 -2.649E-05 0.29339 0.00013445 0.23559 0.00010796 458.2484460841106 64.179 0.94181 61.182 60.733 61.675 -2.9975 63 26 3 0 0 0 0.07456 4 12397 12394;12397;12451;12462 68.081 43.787 1 14361000 6273 5481 3786 3790 6605;6606;6607;6608 6606 0.02148310375048368 DERGIQVV 8 Unmodified _DERGIQVV_ 0 0 0 nc|ENSG00000163918|P35249-2|RFC4;ENST00000494047.5_1_3:186509405-186522502:-|nuORF;ENSG00000163918|ENST00000296273|RFC4 nc|ENSG00000163918|P35249-2|RFC4 nc|ENSG00000163918|P35249-2|RFC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2286376953125 2 458.248349 914.482145 0.15594 7.1457E-05 0.13627 6.2445E-05 0.2922 0.0001339 458.24838210209754 64.695 0.91254 61.237 60.733 61.646 -3.4581 61 25 3 0 0 0 0.075417 2 12121 12074;12121 71.922 27.515 1 13853000 6274 5481 3786 3790 6609;6610 6610 0.02148310375048368 DERGIQVV 8 Unmodified _DERGIQVV_ 0 0 0 nc|ENSG00000163918|P35249-2|RFC4;ENST00000494047.5_1_3:186509405-186522502:-|nuORF;ENSG00000163918|ENST00000296273|RFC4 nc|ENSG00000163918|P35249-2|RFC4 nc|ENSG00000163918|P35249-2|RFC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2394714355469 2 458.248349 914.482145 0.2846 0.00013042 0.0032916 1.5084E-06 0.28789 0.00013193 458.24833401221275 64.475 0.80093 61.218 60.849 61.649 -3.2567 56 22 3 0 0 0 0.07456 3 12096 12081;12096;12143 68.081 46.98 1 13684000 6275 5481 3786 3790 6611;6612;6613 6612 0.02148310375048368 DERLLQEAL 9 Unmodified _DERLLQEAL_ 0 0 0 ENSG00000148296|ENST00000372022|SURF6;ENST00000468290.1_1_9:136198707-136199617:-|nuORF ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7730102539062 2 543.793121 1085.57169 0.42907 0.00023333 -0.49468 -0.000269 -0.065606 -3.5676E-05 543.7928985475335 122.66 0.45685 118.11 117.88 118.34 -4.5476 18 12 2 0 0 0 0.71913 1 24193 24193 20.415 6.5085 1 1568700 6276 4736 3787 3791 6614 6614 0.032325202637593975 DERLLQEAL 9 Unmodified _DERLLQEAL_ 0 0 0 ENSG00000148296|ENST00000372022|SURF6;ENST00000468290.1_1_9:136198707-136199617:-|nuORF ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7926025390625 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 122.75 1 118.02 117.52 118.52 -4.731 0 0 0 0.20681 1 23578 23578 21.59 0.053175 1 6277 4736 3787 3791 6615 6615 0.032325202637593975 DERLLQEAL 9 Unmodified _DERLLQEAL_ 0 0 0 ENSG00000148296|ENST00000372022|SURF6;ENST00000468290.1_1_9:136198707-136199617:-|nuORF ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7935180664062 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 123.02 1 118.29 117.79 118.79 -4.731 0 0 0 0.1543 1 23631 23631 29.841 4.4413 1 6278 4736 3787 3791 6616 6616 0.032325202637593975 DERLLQEAL 9 Unmodified _DERLLQEAL_ 0 0 0 ENSG00000148296|ENST00000372022|SURF6;ENST00000468290.1_1_9:136198707-136199617:-|nuORF ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.781982421875 2 543.793121 1085.57169 0.38128 0.00020733 -0.68931 -0.00037484 -0.30803 -0.00016751 543.7933586261337 122.81 0.60631 118.22 117.88 118.48 -4.5926 27 16 3 0 0 0 0.15889 2 23644 23598;23644 27.223 16.13 1 1189400 6279 4736 3787 3791 6617;6618 6618 0.032325202637593975 DERLVDIKY 9 Unmodified _DERLVDIKY_ 0 0 0 tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1 tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1 tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.310791015625 2 575.808771 1149.60299 0.35105 0.00020214 -0.55052 -0.000317 -0.19947 -0.00011486 575.8084816523286 74.511 0.38319 70.917 70.676 71.059 -3.594 12 10 2 0 0 0 0.48707 1 14160 14160 20.415 2.2682 1 958470 6280 26181 3788 3792 6619 6619 0.03417093297844076 DERLVYESA 9 Unmodified _DERLVYESA_ 0 0 0 ENC1|p.S350Lfs*37|1|0.18|ENSG00000171617|chr5:74635439-74635439|C/-|frameshift_variant;ENC1|p.R348Gfs*39|1|0.42|ENSG00000171617|chr5:74635445-74635445|C/-|frameshift_variant;nc|ENSG00000171617|O14682-2|ENC1;ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant;ENSG00000171617|ENST00000302351|ENC1 ENC1|p.S350Lfs*37|1|0.18|ENSG00000171617|chr5:74635439-74635439|C/-|frameshift_variant ENC1|p.S350Lfs*37|1|0.18|ENSG00000171617|chr5:74635439-74635439|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2614135742188 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 63.394 1 60.397 59.897 60.897 -2.9975 0 0 0 0.21768 1 12248 12248 18.373 2.5259 1 6281 944 3789 3793 6620 6620 -0.028280455243020697 DERLVYESA 9 Unmodified _DERLVYESA_ 0 0 0 ENC1|p.S350Lfs*37|1|0.18|ENSG00000171617|chr5:74635439-74635439|C/-|frameshift_variant;ENC1|p.R348Gfs*39|1|0.42|ENSG00000171617|chr5:74635445-74635445|C/-|frameshift_variant;nc|ENSG00000171617|O14682-2|ENC1;ENC1|p.G499Vfs*26|1|0.12|ENSG00000171617|chr5:74634990-74634990|C/-|frameshift_variant;ENSG00000171617|ENST00000302351|ENC1 ENC1|p.S350Lfs*37|1|0.18|ENSG00000171617|chr5:74635439-74635439|C/-|frameshift_variant ENC1|p.S350Lfs*37|1|0.18|ENSG00000171617|chr5:74635439-74635439|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.26171875 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 63.647 1 60.231 59.731 60.731 -3.4158 0 0 0 0.23508 1 11893 11893 12.241 0.60036 1 6282 944 3789 3793 6621 6621 -0.028280455243020697 DERMELSKS 9 Unmodified _DERMELSKS_ 0 0 0 C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant;ENSG00000171155|ENST00000304661|C1GALT1C1 C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.774169921875 2 547.760963 1093.50737 -0.03417 -1.8717E-05 -1.3087 -0.00071688 -1.3429 -0.00073559 547.7603098523501 41.861 0.42211 39.21 38.968 39.39 -2.651 24 11 3 0 0 0 0.74858 1 7560 7560 22.736 5.6234 1 3776400 6283 348 3790 3794 6622 6622 -0.03564002884695583 DERPYMCDIC 10 Unmodified _DERPYMCDIC_ 0 0 0 OSR2|p.T201M|1|0.25|ENSG00000164920|chr8:98949554-98949554|C/T|missense_variant OSR2|p.T201M|1|0.25|ENSG00000164920|chr8:98949554-98949554|C/T|missense_variant OSR2|p.T201M|1|0.25|ENSG00000164920|chr8:98949554-98949554|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7655029296875 2 622.740859 1243.46716 NaN NaN NaN NaN NaN NaN NaN 143.18 1 138.15 137.65 138.65 -5.0261 0 0 0 0.22588 1 27601 27601 3.9444 0 1 6284 12740 3791 3795 6623 6623 -0.14483008871116 DERRQLQH 8 Unmodified _DERRQLQH_ 0 0 0 PALM|p.M164*|1|0.22|ENSG00000099864|chr19:736061-736061|C/-|frameshift_variant;ENST00000592870.5_1_19:709146-734268:+|nuORF;nc|ENSG00000099864|O75781-2|PALM;ENSG00000099864|ENST00000338448|PALM PALM|p.M164*|1|0.22|ENSG00000099864|chr19:736061-736061|C/-|frameshift_variant PALM|p.M164*|1|0.22|ENSG00000099864|chr19:736061-736061|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2809448242188 2 541.278503 1080.54245 NaN NaN NaN NaN NaN NaN NaN 39.729 1 37.18 36.68 37.68 -2.5491 0 0 0 0.21486 1 7388 7388 8.5933 1.304 1 6285 1906 3792 3796 6624 6624 0.005404207581477749 DERSNFQEA 9 Unmodified _DERSNFQEA_ 0 0 0 MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant;nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3 MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7825317382812 2 548.238709 1094.46287 0.90569 0.00049653 -0.82736 -0.00045359 0.078329 4.2943E-05 548.2381869146327 28.79 0.82921 26.834 26.434 27.263 -1.9561 70 23 4 0 0 0 0.81359 1 5198 5198 7.609 0 1 4009300 6286 3093 3793 3797 6625 6625 -0.08058690706502603 DERTSLQVP 9 Unmodified _DERTSLQVP_ 0 0 0 ENSG00000186910|ENST00000334708|SERPINA11 ENSG00000186910|ENST00000334708|SERPINA11 ENSG00000186910|ENST00000334708|SERPINA11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2791748046875 2 522.769645 1043.52474 -0.10479 -5.478E-05 0.40149 0.00020988 0.2967 0.0001551 522.7695681549761 58.574 0.41219 58.574 58.344 58.757 0 14 11 2 0 0 0 0.85111 1 11212 11212 6.7232 6.7232 1 1045100 6287 7082 3794 3798 6626 6626 0.004716607126283634 DERVQQLRRRI 11 Unmodified _DERVQQLRRRI_ 0 0 0 ENSG00000206113|ENST00000635017|CFAP99 ENSG00000206113|ENST00000635017|CFAP99 ENSG00000206113|ENST00000635017|CFAP99 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.257568359375 3 490.28669 1467.83824 NaN NaN NaN NaN NaN NaN NaN 81.339 1 77.782 77.282 78.282 -3.557 0 0 0 0.22632 1 15884 15884 0.026206 0 1 6288 7666 3795 3799 6627 6627 0.12303623545972187 DERYVREL 8 Unmodified _DERYVREL_ 0 0 0 REV__nc|ENSG00000167994|Q8TBN0-2|RAB3IL1 REV__nc|ENSG00000167994|Q8TBN0-2|RAB3IL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2769165039062 2 540.277638 1078.54072 0.13787 7.4487E-05 -0.37747 -0.00020394 -0.2396 -0.00012945 540.2774428352152 131.49 1.1323 126.64 126.08 127.21 -4.8527 66 32 3 0 0 0 0.54916 2 25288 25288;25292 25.399 4.9848 1 7346300 + 6289 17985 3796 3800 6628;6629 6628 0.004593669495079666 DESAEACP 8 Unmodified _DESAEACP_ 0 0 0 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.200927734375 2 411.152726 820.290898 -0.18375 -7.5549E-05 1.4822 0.00060942 1.2985 0.00053387 411.1547218755454 77.434 1.0975 73.971 73.542 74.64 -3.4633 53 30 4 0 0 0 1.0095 1 15183 15183 5.7604 0 1 1495100 6290 6147 3797 3801 6630 6630 -0.12643558718411896 DESAEHDEY 9 Unmodified _DESAEHDEY_ 0 0 0 nc|ENSG00000153015|Q6UX04-2|CWC27;ENSG00000153015|ENST00000381070|CWC27;ENST00000506168.1_1_5:64096077-64100214:+|nuORF;CWC27|p.K288Nfs*2|1|0.31|ENSG00000153015|chr5:64804307-64804307|A/-|frameshift_variant;CWC27|p.L289Ifs*10|1|0.24|ENSG00000153015|chr5:64804306-64804307|-/A|frameshift_variant nc|ENSG00000153015|Q6UX04-2|CWC27 nc|ENSG00000153015|Q6UX04-2|CWC27 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7918090820312 2 547.699083 1093.38361 NaN NaN NaN NaN NaN NaN NaN 113.71 1 109.26 108.76 109.76 -4.4539 0 0 0 0.23508 1 22404 22404 7.9102 2.1497 1 6291 4953 3798 3802 6631 6631 -0.15934382451337115 DESAEHDEY 9 Unmodified _DESAEHDEY_ 0 0 0 nc|ENSG00000153015|Q6UX04-2|CWC27;ENSG00000153015|ENST00000381070|CWC27;ENST00000506168.1_1_5:64096077-64100214:+|nuORF;CWC27|p.K288Nfs*2|1|0.31|ENSG00000153015|chr5:64804307-64804307|A/-|frameshift_variant;CWC27|p.L289Ifs*10|1|0.24|ENSG00000153015|chr5:64804306-64804307|-/A|frameshift_variant nc|ENSG00000153015|Q6UX04-2|CWC27 nc|ENSG00000153015|Q6UX04-2|CWC27 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7719116210938 2 547.699083 1093.38361 0.16971 9.2949E-05 -0.68708 -0.00037631 -0.51737 -0.00028336 547.6988592247795 60.024 1.0018 57.091 56.642 57.644 -2.9333 59 28 3 0 0 0 0.87888 1 11541 11541 4.756 0 1 6220800 6292 4953 3798 3802 6632 6632 -0.15934382451337115 DESAEHDEY 9 Unmodified _DESAEHDEY_ 0 0 0 nc|ENSG00000153015|Q6UX04-2|CWC27;ENSG00000153015|ENST00000381070|CWC27;ENST00000506168.1_1_5:64096077-64100214:+|nuORF;CWC27|p.K288Nfs*2|1|0.31|ENSG00000153015|chr5:64804307-64804307|A/-|frameshift_variant;CWC27|p.L289Ifs*10|1|0.24|ENSG00000153015|chr5:64804306-64804307|-/A|frameshift_variant nc|ENSG00000153015|Q6UX04-2|CWC27 nc|ENSG00000153015|Q6UX04-2|CWC27 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.76953125 2 547.699083 1093.38361 0.22393 0.00012265 -0.65634 -0.00035948 -0.43241 -0.00023683 547.6986845245539 60.137 0.92293 56.914 56.638 57.561 -3.2237 58 25 3 0 0 0 0.87888 1 11317 11317 4.756 0 1 3776100 6293 4953 3798 3802 6633 6633 -0.15934382451337115 DESCSDDSSV 10 Unmodified _DESCSDDSSV_ 0 0 0 REV__ENSG00000150051|ENST00000419761|MKX REV__ENSG00000150051|ENST00000419761|MKX MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2672119140625 2 522.177126 1042.3397 NaN NaN NaN NaN NaN NaN NaN 94.893 1 91.012 90.512 91.512 -3.881 0 0 0 2.8426 1 18207 18207 0.043787 0 1 + 6294 17024 3799 3803 6634 6634 -0.17977734939950096 DESCTSCFSS 10 Unmodified _DESCTSCFSS_ 0 0 0 REV__ENSG00000188738|ENST00000424728|FSIP2 REV__ENSG00000188738|ENST00000424728|FSIP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2869873046875 2 533.178614 1064.34268 0.42391 0.00022602 -1.7978 -0.00095857 -1.3739 -0.00073255 533.1776394972323 74.149 0.24296 70.555 70.467 70.71 -3.594 9 6 2 0 0 0 0.81109 1 14099 14099 18.146 4.2403 1 1278300 + 6295 19166 3800 3804 6635 6635 -0.18692183086795922 DESELLGRY 9 Unmodified _DESELLGRY_ 0 0 0 REV__CON__A2AB72 REV__CON__A2AB72 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2681274414062 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 104.04 1 104.04 103.54 104.54 0 0 0 0 0.22621 1 20449 20449 15.847 1.0089 1 + + 6296 13500 3801 3805 6636 6636 -0.028280455242793323 DESFARVV 8 Unmodified _DESFARVV_ 0 0 0 nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;PTK7|p.P254Rfs*35|1|0.33|ENSG00000112655|chr6:43130606-43130606|C/-|frameshift_variant;PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant;PTK7|p.D618Gfs*36|1|0.42|ENSG00000112655|chr6:43142009-43142010|-/G|frameshift_variant nc|ENSG00000112655|Q13308-5|PTK7;REV__ENSG00000147799|ENST00000377307|ARHGAP39 REV__ENSG00000147799|ENST00000377307|ARHGAP39 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5351867675781 2 461.735074 921.455596 0.18796 8.6786E-05 0.16527 7.6312E-05 0.35323 0.0001631 461.73511438427937 85.783 0.59209 81.833 81.492 82.084 -3.9503 39 16 3 0 0 0 0.66247 2 16263 16252;16263 18.146 3.5647 1 3799900 6297 2703;16951 3802 3806 6637;6638 6638 -0.008273785162828062 DESFARVV 8 Unmodified _DESFARVV_ 0 0 0 nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;PTK7|p.P254Rfs*35|1|0.33|ENSG00000112655|chr6:43130606-43130606|C/-|frameshift_variant;PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant;PTK7|p.D618Gfs*36|1|0.42|ENSG00000112655|chr6:43142009-43142010|-/G|frameshift_variant nc|ENSG00000112655|Q13308-5|PTK7;REV__ENSG00000147799|ENST00000377307|ARHGAP39 REV__ENSG00000147799|ENST00000377307|ARHGAP39 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.735074 921.455596 0.46977 0.00021691 -0.19537 -9.0208E-05 0.2744 0.0001267 461.7349861327027 81.928 0.71108 81.928 81.58 82.291 0 0.049814 -0.00031756 NaN 18.146 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 5909800 6298 2703;16951 3802 3806 -0.008273785162828062 DESFARVV 8 Unmodified _DESFARVV_ 0 0 0 nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;PTK7|p.P254Rfs*35|1|0.33|ENSG00000112655|chr6:43130606-43130606|C/-|frameshift_variant;PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant;PTK7|p.D618Gfs*36|1|0.42|ENSG00000112655|chr6:43142009-43142010|-/G|frameshift_variant nc|ENSG00000112655|Q13308-5|PTK7;REV__ENSG00000147799|ENST00000377307|ARHGAP39 REV__ENSG00000147799|ENST00000377307|ARHGAP39 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.735074 921.455596 -0.12313 -5.6851E-05 0.30582 0.00014121 0.1827 8.4357E-05 461.7352109531066 85.527 0.71378 81.863 81.466 82.18 -3.6641 -0.015457 0.00014527 NaN 18.146 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4293100 6299 2703;16951 3802 3806 -0.008273785162828062 DESFARVV 8 Unmodified _DESFARVV_ 0 0 0 nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;PTK7|p.P254Rfs*35|1|0.33|ENSG00000112655|chr6:43130606-43130606|C/-|frameshift_variant;PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant;PTK7|p.D618Gfs*36|1|0.42|ENSG00000112655|chr6:43142009-43142010|-/G|frameshift_variant nc|ENSG00000112655|Q13308-5|PTK7;REV__ENSG00000147799|ENST00000377307|ARHGAP39 REV__ENSG00000147799|ENST00000377307|ARHGAP39 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.735074 921.455596 0.039933 1.8438E-05 0.21687 0.00010014 0.2568 0.00011857 461.7351943364061 85.601 0.79268 81.889 81.43 82.222 -3.7117 0.011042 6.3124E-05 NaN 18.146 48 22 3 NaN NaN NaN NaN 0 NaN NaN 0 6042000 6300 2703;16951 3802 3806 -0.008273785162828062 DESGLWVIY 9 Unmodified _DESGLWVIY_ 0 0 0 nc|ENSG00000185585|Q68BL7-3|OLFML2A;nc|ENSG00000185585|Q68BL7-2|OLFML2A;ENSG00000185585|ENST00000373580|OLFML2A;OLFML2A|p.A536T|1|0.2|ENSG00000185585|chr9:124810059-124810059|G/A|missense_variant nc|ENSG00000185585|Q68BL7-3|OLFML2A nc|ENSG00000185585|Q68BL7-3|OLFML2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2623291015625 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 64.222 1 61.225 60.725 61.725 -2.9975 0 0 0 0.20155 1 12420 12420 23.148 5.0134 1 6301 7000 3803 3807 6639 6639 -0.02425956030560883 DESGLWVIY 9 Unmodified _DESGLWVIY_ 0 0 0 nc|ENSG00000185585|Q68BL7-3|OLFML2A;nc|ENSG00000185585|Q68BL7-2|OLFML2A;ENSG00000185585|ENST00000373580|OLFML2A;OLFML2A|p.A536T|1|0.2|ENSG00000185585|chr9:124810059-124810059|G/A|missense_variant nc|ENSG00000185585|Q68BL7-3|OLFML2A nc|ENSG00000185585|Q68BL7-3|OLFML2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2741088867188 2 541.263665 1080.51278 0.27608 0.00014943 -2.5684 -0.0013902 -2.2923 -0.0012407 541.2625290809766 64.827 0.63358 61.369 60.837 61.471 -3.4581 19 17 2 0 0 0 0.14832 2 12066 12066;12088 44.407 10.645 1 1141200 6302 7000 3803 3807 6640;6641 6640 -0.02425956030560883 DESGVFIY 8 Unmodified _DESGVFIY_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 930.5147094726562 1 929.42509 928.417813 0.52926 0.00049191 -0.079254 -7.3661E-05 0.45001 0.00041825 929.4246454021554 125.8 0.77841 125.8 125.47 126.24 0 37 21 2 0 0 0 0.080209 2 24830 24773;24830 74.396 33.948 1 5274400 6303 3214 3804 3808 6642;6643 6643 -0.04925889501760139 DESGVFIY 8 Unmodified _DESGVFIY_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2554016113281 2 465.216183 928.417813 NaN NaN NaN NaN NaN NaN NaN 130.68 1 126.04 125.54 126.54 -4.6359 0 0 0 0.17894 1 25752 25752 32.117 17.535 1 6304 3214 3804 3808 6644 6644 -0.04925889501760139 DESGVFIY 8 Unmodified _DESGVFIY_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 930.4774169921875 1 929.42509 928.417813 0.26646 0.00024766 -0.01636 -1.5205E-05 0.2501 0.00023245 929.4249210649614 131.02 1.0113 126.19 125.78 126.79 -4.8355 44 28 2 0 0 0 0.05639 1 25175 25175 86.121 43.153 1 5393400 6305 3214 3804 3808 6645 6645 -0.04925889501760139 DESGVFIY 8 Unmodified _DESGVFIY_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24029541015625 2 465.216183 928.417813 NaN NaN NaN NaN NaN NaN NaN 101.96 1 97.644 97.144 98.144 -4.3208 0 0 0 0.17294 1 19518 19518 34.187 2.0704 1 6306 3214 3804 3808 6646 6646 -0.04925889501760139 DESGVFIY 8 Unmodified _DESGVFIY_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 930.48193359375 1 929.42509 928.417813 0.31746 0.00029506 -0.078254 -7.2731E-05 0.23921 0.00022232 929.4249898385277 130.95 0.86243 126.18 125.74 126.6 -4.7725 42 24 2 0 0 0 0.080209 1 25168 25168 74.396 40.209 1 6126300 6307 3214 3804 3808 6647 6647 -0.04925889501760139 DESILRDL 8 Unmodified _DESILRDL_ 0 0 0 REV__ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant REV__ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2357177734375 2 480.753464 959.492375 -0.037169 -1.7869E-05 0.43873 0.00021092 0.40156 0.00019305 480.75382171593395 90.057 0.18076 86.198 86.116 86.297 -3.8595 6 4 2 0 0 0 0.9383 1 17633 17633 25.399 3.6527 1 467950 + 6308 18160 3805 3809 6648 6648 0.011008733096218748 DESIPIMY 8 Unmodified _DESIPIMY_ 0 0 0 nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3 nc|ENSG00000036549|Q8IYH5-3|ZZZ3 nc|ENSG00000036549|Q8IYH5-3|ZZZ3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 483.9094543457031 2 484.225694 966.436834 0.13736 6.6515E-05 -0.087922 -4.2574E-05 0.049441 2.3941E-05 484.2256028958414 142.52 0.82492 137.87 137.45 138.27 -4.656 40 23 2 0 0 0 0.95284 1 28096 28096 20.871 11.524 1 6093900 6309 1173 3806 3810 6649 6649 -0.04772676202344428 DESIPIMY 8 Unmodified _DESIPIMY_ 0 0 0 nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3 nc|ENSG00000036549|Q8IYH5-3|ZZZ3 nc|ENSG00000036549|Q8IYH5-3|ZZZ3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 484.225694 966.436834 0.18381 8.9004E-05 0.18979 9.1902E-05 0.3736 0.00018091 484.22566691269276 142.88 0.90596 137.86 137.37 138.28 -5.0261 0.077649 9.8362E-05 NaN 20.871 63 25 3 NaN NaN NaN NaN 0 NaN NaN 0 4897000 6310 1173 3806 3810 -0.04772676202344428 DESIPIMY 8 Unmodified _DESIPIMY_ 0 0 0 nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3 nc|ENSG00000036549|Q8IYH5-3|ZZZ3 nc|ENSG00000036549|Q8IYH5-3|ZZZ3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 484.225694 966.436834 0.12932 6.2621E-05 0.17348 8.4002E-05 0.3028 0.00014662 484.2257067338549 142.51 0.89291 137.62 137.31 138.2 -4.8982 -0.16358 8.2563E-05 NaN 20.871 41 24 2 NaN NaN NaN NaN 0 NaN NaN 0 5023900 6311 1173 3806 3810 -0.04772676202344428 DESKSDIY 8 Unmodified _DESKSDIY_ 0 0 0 REV__ENST00000469999.1_1_7:152064752-152065184:+|nuORF REV__ENST00000469999.1_1_7:152064752-152065184:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7366638183594 2 478.714005 955.413456 -0.3871 -0.00018531 0.57925 0.0002773 0.19216 9.1987E-05 478.71417542605667 64.046 0.59362 64.046 63.815 64.409 0 28 16 2 0 0 0 0.40661 2 12381 12329;12381 32.117 4.8255 1 2269600 + 6312 22024 3807 3811 6650;6651 6651 -0.06603398715333242 DESKSDIY 8 Unmodified _DESKSDIY_ 0 0 0 REV__ENST00000469999.1_1_7:152064752-152065184:+|nuORF REV__ENST00000469999.1_1_7:152064752-152065184:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7425842285156 2 478.714005 955.413456 -0.026539 -1.2705E-05 -0.031062 -1.487E-05 -0.057601 -2.7574E-05 478.71393878271743 67.4 1.4883 64.292 63.514 65.003 -3.1086 64 42 2 0 0 0 0.2118 2 13065 12973;13065 44.407 3.7094 1 1941000 + 6313 22024 3807 3811 6652;6653 6653 -0.06603398715333242 DESKSDIY 8 Unmodified _DESKSDIY_ 0 0 0 REV__ENST00000469999.1_1_7:152064752-152065184:+|nuORF REV__ENST00000469999.1_1_7:152064752-152065184:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72161865234375 2 478.714005 955.413456 NaN NaN NaN NaN NaN NaN NaN 64.6 1 61.317 60.817 61.817 -3.2832 0 0 0 0.21452 1 12130 12130 13.508 0 1 + 6314 22024 3807 3811 6654 6654 -0.06603398715333242 DESKSDIY 8 Unmodified _DESKSDIY_ 0 0 0 REV__ENST00000469999.1_1_7:152064752-152065184:+|nuORF REV__ENST00000469999.1_1_7:152064752-152065184:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.714005 955.413456 -0.3871 -0.00018531 0.57925 0.0002773 0.19216 9.1987E-05 478.71417542605667 64.046 0.59362 64.046 63.815 64.409 0 -0.19945 0.00062247 NaN 44.407 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2269600 + 6315 22024 3807 3811 -0.06603398715333242 DESLPGLAA 9 Unmodified _DESLPGLAA_ 0 0 0 REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2156677246094 2 436.721633 871.428712 0.43628 0.00019053 -0.3834 -0.00016744 0.052885 2.3096E-05 436.7213978135406 99.713 0.73011 99.713 99.338 100.07 0 35 20 2 0 0 0 0.085258 2 19582 19498;19582 60.39 31.903 1 3158900 6316 1664 3808 3812 6655;6656 6656 -0.01214487127481334 DESLPGLAA 9 Unmodified _DESLPGLAA_ 0 0 0 REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22332763671875 2 436.721633 871.428712 -0.27987 -0.00012222 0.36804 0.00016073 0.088172 3.8507E-05 436.7217010196522 103.88 0.8204 99.663 99.278 100.1 -4.2183 45 23 3 0 0 0 0.085258 4 20385 20385;20399;20431;20483 60.39 31.903 1 3795000 6317 1664 3808 3812 6657;6658;6659;6660 6657 -0.01214487127481334 DESLPGLAA 9 Unmodified _DESLPGLAA_ 0 0 0 REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.223388671875 2 436.721633 871.428712 0.14427 6.3005E-05 -0.18986 -8.2915E-05 -0.045591 -1.9911E-05 436.721498983888 104.19 0.82976 99.84 99.418 100.25 -4.346 38 23 2 0 0 0 0.050517 4 19950 19950;19971;19986;20000 70.716 26.309 1 3489600 6318 1664 3808 3812 6661;6662;6663;6664 6661 -0.01214487127481334 DESLPGLAA 9 Unmodified _DESLPGLAA_ 0 0 0 REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2153625488281 2 436.721633 871.428712 0.48973 0.00021387 -0.42511 -0.00018565 0.064616 2.8219E-05 436.721390410249 103.81 0.77776 99.752 99.453 100.23 -4.0543 36 21 2 0 0 0 0.060164 2 19993 19967;19993 67.344 33.241 1 4220900 6319 1664 3808 3812 6665;6666 6666 -0.01214487127481334 DESLQYLAQ 9 Unmodified _DESLQYLAQ_ 0 0 0 REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2 REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2688598632812 2 533.756204 1065.49785 -0.18758 -0.00010012 -0.75741 -0.00040427 -0.94499 -0.00050439 533.7558146804172 59.012 0.49287 59.012 58.792 59.284 0 20 13 2 0 0 0 0.80521 1 11335 11335 6.7232 5.2413 1 1013800 + 6320 18078 3809 3813 6667 6667 -0.032274478985755195 DESNKSLY 8 Unmodified _DESNKSLY_ 0 0 0 REV__nc|ENSG00000048649|Q96T23-3|RSF1 REV__nc|ENSG00000048649|Q96T23-3|RSF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.723388671875 2 478.221997 954.429441 -0.068337 -3.268E-05 0.17054 8.1557E-05 0.1022 4.8877E-05 478.2220308468999 32.755 0.62608 32.755 32.399 33.025 0 40 17 4 0 0 0 0.69713 1 6001 6001 14.838 0.25658 1 5939200 + 6321 14075 3810 3814 6668 6668 -0.04959692478416855 DESNLPEI 8 Unmodified _DESNLPEI_ 0 0 0 nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-7|PPHLN1;ENST00000547440.1_1_12:42781241-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-6|PPHLN1 nc|ENSG00000134283|Q8NEY8|PPHLN1 nc|ENSG00000134283|Q8NEY8|PPHLN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22894287109375 2 458.716547 915.418542 -0.22206 -0.00010186 0.49936 0.00022906 0.27729 0.0001272 458.71674334996305 103.68 0.64466 99.462 99.111 99.756 -4.2183 31 18 2 0 0 0 0.47546 1 20416 20416 36.044 11.37 1 1273300 6322 12334 3811 3815 6669 6669 -0.042550948527264154 DESNLPEI 8 Unmodified _DESNLPEI_ 0 0 0 nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-7|PPHLN1;ENST00000547440.1_1_12:42781241-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-6|PPHLN1 nc|ENSG00000134283|Q8NEY8|PPHLN1 nc|ENSG00000134283|Q8NEY8|PPHLN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2384033203125 2 458.716547 915.418542 0.15118 6.935E-05 0.36252 0.00016629 0.5137 0.00023564 458.7165691689051 103.92 0.65561 99.577 99.213 99.869 -4.346 26 18 2 0 0 0 0.86749 1 19938 19938 28.487 23.731 1 1029800 6323 12334 3811 3815 6670 6670 -0.042550948527264154 DESPRVNY 8 Unmodified _DESPRVNY_ 0 0 0 REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26336669921875 2 490.227613 978.440674 0.50943 0.00024974 -0.54345 -0.00026642 -0.034022 -1.6679E-05 490.2273458093358 47.561 5.9984 47.561 44.849 50.848 0 217 171 2 0 0 0 0.71273 1 8599 8599 12.532 0.89125 1 7435900 + 6324 18430 3812 3816 6671 6671 -0.04940870384291429 DESPYVVGP 9 Unmodified _DESPYVVGP_ 0 0 0 REV__ENSG00000134697|ENST00000373062|GNL2 REV__ENSG00000134697|ENST00000373062|GNL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7689514160156 2 481.726915 961.439277 NaN NaN NaN NaN NaN NaN NaN 130.73 1 125.9 125.4 126.4 -4.8355 0 0 0 0.23508 1 25100 25100 11.64 0.81637 1 + 6325 16223 3813 3817 6672 6672 -0.04298504473035791 DESQTGEPG 9 Unmodified _DESQTGEPG_ 0 0 0 nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;nc|ENSG00000205726|Q15811-5|ITSN1;ITSN1|p.P1076Tfs*2|1|0.25|ENSG00000205726|chr21:33826852-33826853|-/A|frameshift_variant;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;CON__ENSEMBL:ENSBTAP00000001528 nc|ENSG00000205726|Q15811-4|ITSN1 nc|ENSG00000205726|Q15811-4|ITSN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353210449219 2 460.185611 918.35667 -0.09385 -4.3188E-05 -1.4817 -0.00068185 -1.5755 -0.00072504 460.18499576174776 79.159 0.59535 75.354 74.984 75.58 -3.8048 23 16 2 0 0 0 0.80521 1 15042 15042 15.847 6.4997 1 862310 + 6326 7655 3814 3818 6673 6673 -0.10577446271838653 DESRHRRKFRP 11 Unmodified _DESRHRRKFRP_ 0 0 0 REV__ENSG00000100207|ENST00000677622|TCF20 REV__ENSG00000100207|ENST00000677622|TCF20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.4013061523438 2 742.403089 1482.79163 NaN NaN NaN NaN NaN NaN NaN 162.54 1 162.54 162.04 163.04 0 0 0 0 0.23634 1 32684 32684 3.2813 0.28607 1 + 6327 14674 3815 3819 6674 6674 0.069541837146744 DESRIVRESSM 11 Unmodified _DESRIVRESSM_ 0 0 0 REV__nc|ENSG00000172794|Q96AX2-4|RAB37 REV__nc|ENSG00000172794|Q96AX2-4|RAB37 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2152404785156 3 436.878598 1307.61396 0.54018 0.00023599 4.089 0.0017864 4.6292 0.0020224 436.8791658980964 104.34 0.25269 100.29 100.16 100.41 -4.0543 9 6 2 0 0 0 0.79428 1 20041 20041 4.4062 0.81909 1 515620 + 6328 18310 3816 3820 6675 6675 -0.027538723901898265 DESRTNSVSSY 11 Unmodified _DESRTNSVSSY_ 0 0 0 sp|F5HCK7|UL140_HCMVMProteinUL140OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL140PE=4SV=1 sp|F5HCK7|UL140_HCMVMProteinUL140OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL140PE=4SV=1 sp|F5HCK7|UL140_HCMVMProteinUL140OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL140PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7720336914062 2 622.773113 1243.53167 NaN NaN NaN NaN NaN NaN NaN 110.62 1 106.13 105.63 106.63 -4.4915 0 0 0 0.22501 1 21234 21234 12.241 0 1 6329 25726 3817 3821 6676 6676 -0.08035071197446086 DESSDEQP 8 Unmodified _DESSDEQP_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2;ERCC6L2|p.T191Nfs*22|1|0.04|ENSG00000182150|chr9:96004683-96004683|C/-|frameshift_variant;ERCC6L2|p.T303Hfs*50|1|0.13|ENSG00000182150|chr9:96012537-96012537|A/-|frameshift_variant;ENST00000479391.6_3_9:98729892-98767017:+|nuORF ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7474670410156 2 453.669794 905.325035 -0.32885 -0.00014919 1.886 0.00085561 1.5571 0.00070642 453.670754912547 53.602 0.31314 50.718 50.595 50.908 -2.8837 11 8 2 0 0 0 1.0191 1 10201 10201 4.756 2.9118 1 317290 6330 6767 3818 3822 6677 6677 -0.13141439025798718 DESSEEEEEY 10 Unmodified _DESSEEEEEY_ 0 0 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.763427734375 2 623.217502 1244.42045 0.63166 0.00039366 0.9515 0.00059299 1.5832 0.00098665 623.2180808697839 106.29 0.31224 106.29 106.09 106.4 0 11 8 2 0 0 0 0.89521 1 20856 20856 3.5965 0.31518 1 1399300 6331 5840 3819 3823 6678 6678 -0.1919817541604516 DESSFMNEE 9 Unmodified _DESSFMNEE_ 0 0 0 ENSG00000183395|ENST00000329406|PMCH ENSG00000183395|ENST00000329406|PMCH ENSG00000183395|ENST00000329406|PMCH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7824096679688 2 544.197861 1086.38117 0.55648 0.00030283 1.0764 0.00058578 1.6329 0.00088861 544.1982801459268 49.728 0.44485 49.728 49.547 49.992 0 17 12 2 0 0 0 0.77734 1 9406 9406 13.906 5.9959 1 707780 6332 6844 3820 3824 6679 6679 -0.15856554180618332 DESSFSDME 9 Unmodified _DESSFSDME_ 0 0 0 REV__nc|ENSG00000042062|Q96MK2-2|RIPOR3 REV__nc|ENSG00000042062|Q96MK2-2|RIPOR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6864013671875 2 523.684587 1045.35462 NaN NaN NaN NaN NaN NaN NaN 164.56 1 159.49 158.99 159.99 -5.0648 0 0 0 0.19652 1 32100 32100 0.073264 0 1 + 6333 14051 3821 3825 6680 6680 -0.16624243071964884 DESTSTAY 8 Unmodified _DESTSTAY_ 0 0 0 nc|ENSG00000280411|A0A0B4J2H0|IGHV1-69D nc|ENSG00000280411|A0A0B4J2H0|IGHV1-69D nc|ENSG00000280411|A0A0B4J2H0|IGHV1-69D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2252197265625 2 437.177255 872.339957 NaN NaN NaN NaN NaN NaN NaN 65.064 1 62.017 61.517 62.517 -3.047 0 0 0 0.21486 1 12588 12588 5.7604 0.52976 1 6334 12642 3822 3826 6681 6681 -0.10131947157810828 DESWALKA 8 Unmodified _DESWALKA_ 0 0 0 ENST00000476938.5_1_7:23401151-23509630:-|nuORF;ENST00000468005.1_1_7:23455823-23509786:-|nuORF;ENSG00000136231|ENST00000258729|IGF2BP3 ENST00000476938.5_1_7:23401151-23509630:-|nuORF ENST00000476938.5_1_7:23401151-23509630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2290344238281 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 37.971 1 35.529 35.029 36.029 -2.4419 0 0 0 0.21486 1 6743 6743 8.5933 0 1 6335 3992 3823 3827 6682 6682 -0.017787808905836755 DESYKLQSP 9 Unmodified _DESYKLQSP_ 0 0 0 REV__PCSK1|p.D715Y|1|0.07|ENSG00000175426|chr5:96393120-96393120|C/A|missense_variant REV__PCSK1|p.D715Y|1|0.07|ENSG00000175426|chr5:96393120-96393120|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2640991210938 2 533.756204 1065.49785 0.43515 0.00023226 -1.8065 -0.00096421 -1.3713 -0.00073195 533.755397194807 57.725 0.77946 54.474 54.113 54.892 -3.2517 23 21 2 0 0 0 0.66788 1 10657 10657 17.113 0 1 803510 + 6336 24449 3824 3828 6683 6683 -0.03227447898552782 DETAKKIQY 9 Unmodified _DETAKKIQY_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7781372070312 2 548.287671 1094.56079 0.60683 0.00033272 -0.72682 -0.00039851 -0.11999 -6.5789E-05 548.2873517126626 30.731 0.46122 28.615 28.399 28.861 -2.1167 19 12 2 0 0 0 0.7906 1 5574 5574 13.042 0 1 1091100 6337 3180 3825 3829 6684 6684 0.01729117889499321 DETARDTRM 9 Unmodified _DETARDTRM_ 0 0 0 REV__ENST00000317357.9_1_6:107811396-107811426:+|nuORF REV__ENST00000317357.9_1_6:107811396-107811426:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7791748046875 2 547.748387 1093.48222 0.21579 0.0001182 0.077973 4.2709E-05 0.29376 0.00016091 547.7487444369691 61.337 0.7878 58.375 57.863 58.651 -2.9614 37 22 2 0 0 0 0.55979 1 11843 11843 15.847 1.0089 1 1866700 + 6338 20529 3826 3830 6685 6685 -0.060780576872502934 DETCRNGY 8 Unmodified _DETCRNGY_ 0 0 0 KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-8|KMT2E KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7358093261719 2 479.190174 956.365795 NaN NaN NaN NaN NaN NaN NaN 78.173 1 74.71 74.21 75.21 -3.4633 0 0 0 0.23366 1 15265 15265 0.12286 0 1 6339 993 3827 3831 6686 6686 -0.1141337618715852 DETCRNGY 8 Unmodified _DETCRNGY_ 0 0 0 KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-8|KMT2E KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72967529296875 2 479.190174 956.365795 NaN NaN NaN NaN NaN NaN NaN 108.93 1 104.55 104.05 105.05 -4.3776 0 0 0 0.21486 1 21466 21466 9.3474 0 1 6340 993 3827 3831 6687 6687 -0.1141337618715852 DETEEDNNQ 9 Unmodified _DETEEDNNQ_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.775390625 2 547.199447 1092.38434 0.28368 0.00015523 -4.441 -0.0024301 -4.1574 -0.0022749 547.1965321591676 133.94 0.17186 129.12 129.06 129.23 -4.8175 7 4 2 0 0 0 0.87511 1 25775 25775 3.9444 3.254 1 1114700 6341 1307 3828 3832 6688 6688 -0.15815587802285336 DETEEEGSGTV 11 Unmodified _DETEEEGSGTV_ 0 0 0 REV__ENSG00000282936|ENST00000634965|unknown REV__ENSG00000282936|ENST00000634965|unknown MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3362426757812 2 576.73058 1151.44661 NaN NaN NaN NaN NaN NaN NaN 105.04 1 105.04 104.54 105.54 0 0 0 0 0.22943 1 20648 20648 8.7454 0.15213 1 + 6342 19954 3829 3833 6689 6689 -0.12305861453933176 DETEHTGQE 9 Unmodified _DETEHTGQE_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2 nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6859130859375 2 523.207075 1044.3996 0.1876 9.8155E-05 0.12478 6.5287E-05 0.31238 0.00016344 523.2066993053711 138.84 0.91071 138.84 138.38 139.29 0 65 25 4 0 0 0 0.2219 2 27581 27573;27581 36.127 8.628 1 11379000 6343 7505;7465;7246 3830 3834 6690;6691 6691 -0.12082676214413368 DETEKKVL 8 Unmodified _DETEKKVL_ 0 0 0 nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1 nc|ENSG00000145734|A6H8Y1-2|BDP1 nc|ENSG00000145734|A6H8Y1-2|BDP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25384521484375 2 481.263665 960.512776 NaN NaN NaN NaN NaN NaN NaN 105.08 1 100.99 100.49 101.49 -4.0861 0 0 0 0.20294 1 20212 20212 23.148 0 1 6344 4618 3831 3835 6692 6692 0.030940439694290944 DETELARQM 9 Unmodified _DETELARQM_ 0 0 0 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7665405273438 2 546.753138 1091.49172 0.14985 8.1933E-05 -0.19049 -0.00010415 -0.040639 -2.2219E-05 546.753159409149 62.146 0.63673 58.777 58.429 59.065 -3.3694 32 17 3 0 0 0 0.17935 2 11619 11612;11619 39.95 15.929 1 3290900 6345 3823 3832 3836 6693;6694 6694 -0.05036289401732574 DETELARQM 9 Unmodified _DETELARQM_ 0 0 0 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.753138 1091.49172 0.030091 1.6453E-05 0.20453 0.00011183 0.23462 0.00012828 546.7532585693596 58.717 0.56116 58.717 58.442 59.004 0 -0.0054098 0.0002733 NaN 39.95 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2597500 6346 3823 3832 3836 -0.05036289401732574 DETELARQM 9 Unmodified _DETELARQM_ 0 0 0 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.753138 1091.49172 0.23664 0.00012939 -0.42517 -0.00023247 -0.18853 -0.00010308 546.752951897274 61.617 0.56041 58.656 58.377 58.937 -2.9614 -0.066779 -0.00041529 NaN 39.95 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3370400 6347 3823 3832 3836 -0.05036289401732574 DETELARQM 9 Unmodified _DETELARQM_ 0 0 0 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.753138 1091.49172 0.28304 0.00015475 0.040937 2.2383E-05 0.32397 0.00017713 546.7531911992518 61.98 0.65665 58.74 58.381 59.037 -3.2395 0.017679 9.4411E-05 NaN 39.95 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 4155100 6348 3823 3832 3836 -0.05036289401732574 DETERVLGY 9 Unmodified _DETERVLGY_ 0 0 0 REV__nc|ENSG00000123427|Q96AZ1-2|EEF1AKMT3 REV__nc|ENSG00000123427|Q96AZ1-2|EEF1AKMT3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2614135742188 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 54.479 1 54.479 53.979 54.979 0 0 0 0 0.20628 1 10389 10389 21.747 5.8995 1 + 6349 24021 3833 3837 6695 6695 -0.028280455242793323 DETERVLGY 9 Unmodified _DETERVLGY_ 0 0 0 REV__nc|ENSG00000123427|Q96AZ1-2|EEF1AKMT3 REV__nc|ENSG00000123427|Q96AZ1-2|EEF1AKMT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2625732421875 2 541.261653 1080.50875 0.05226 2.8286E-05 0.75222 0.00040715 0.80448 0.00043544 541.2624301843427 78.396 0.66638 74.63 74.248 74.914 -3.7664 40 18 3 0 0 0 0.57447 1 14911 14911 14.838 0.93222 1 3981500 + 6350 24021 3833 3837 6696 6696 -0.028280455242793323 DETFDCQE 8 Unmodified _DETFDCQE_ 0 0 0 REV__ENST00000546630.1_1_12:56552185-56553570:+|nuORF REV__ENST00000546630.1_1_12:56552185-56553570:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 493.67352294921875 2 493.674022 985.333491 NaN NaN NaN NaN NaN NaN NaN 162.42 1 157.63 157.13 158.13 -4.7898 0 0 0 0.23487 1 32322 32322 0.12286 0.049601 1 + 6351 22896 3834 3838 6697 6697 -0.1597620838082321 DETGHFVLY 9 Unmodified _DETGHFVLY_ 0 0 0 ENST00000511334.1_1_5:64872783-64879053:+|nuORF;nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1 ENST00000511334.1_1_5:64872783-64879053:+|nuORF ENST00000511334.1_1_5:64872783-64879053:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2762451171875 2 540.753464 1079.49238 0.27959 0.00015119 0.15471 8.3657E-05 0.43429 0.00023485 540.7536250116398 116.61 0.66239 116.61 116.22 116.88 0 31 18 2 0 0 0 0.084379 2 22958 22958;22961 42.232 38.645 1 4293100 6352 2751 3835 3839 6698;6699 6698 -0.04419126690345365 DETGHFVLY 9 Unmodified _DETGHFVLY_ 0 0 0 ENST00000511334.1_1_5:64872783-64879053:+|nuORF;nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1 ENST00000511334.1_1_5:64872783-64879053:+|nuORF ENST00000511334.1_1_5:64872783-64879053:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2727661132812 2 540.753464 1079.49238 0.44562 0.00024097 0.45231 0.00024459 0.89793 0.00048556 540.7538433808395 121.27 1.0307 116.72 116.21 117.24 -4.5476 48 23 3 0 0 0 0.060164 2 23891 23891;23938 67.344 38.857 1 4391600 6353 2751 3835 3839 6700;6701 6700 -0.04419126690345365 DETGHFVLY 9 Unmodified _DETGHFVLY_ 0 0 0 ENST00000511334.1_1_5:64872783-64879053:+|nuORF;nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1 ENST00000511334.1_1_5:64872783-64879053:+|nuORF ENST00000511334.1_1_5:64872783-64879053:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2733154296875 2 540.753464 1079.49238 0.66962 0.0003621 0.76445 0.00041338 1.4341 0.00077548 540.7540268362397 121.32 1.1626 116.64 116.04 117.2 -4.6873 58 32 3 0 0 0 0.084379 3 23273 23273;23275;23340 50.855 32.688 1 5223800 6354 2751 3835 3839 6702;6703;6704 6702 -0.04419126690345365 DETGHFVLY 9 Unmodified _DETGHFVLY_ 0 0 0 ENST00000511334.1_1_5:64872783-64879053:+|nuORF;nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1 ENST00000511334.1_1_5:64872783-64879053:+|nuORF ENST00000511334.1_1_5:64872783-64879053:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26806640625 2 540.753464 1079.49238 0.42538 0.00023003 0.54614 0.00029533 0.97153 0.00052536 540.7539283169327 121.17 1.0086 116.64 116.03 117.04 -4.5305 52 26 3 0 0 0 0.060164 1 23330 23330 67.344 44.195 1 4946300 6355 2751 3835 3839 6705 6705 -0.04419126690345365 DETIIKLPD 9 Unmodified _DETIIKLPD_ 0 0 0 REV__BRPF3|p.P854Rfs*6|3|0.23|ENSG00000096070|chr6:36213952-36213952|C/-|frameshift_variant REV__BRPF3|p.P854Rfs*6|3|0.23|ENSG00000096070|chr6:36213952-36213952|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2611694335938 2 522.284597 1042.55464 NaN NaN NaN NaN NaN NaN NaN 85.766 1 81.816 81.316 82.316 -3.9503 0 0 0 0.23508 1 16316 16316 11.64 0.81637 1 + 6356 13209 3836 3840 6706 6706 0.03506599657953302 DETIYIIEV 9 Unmodified _DETIYIIEV_ 0 0 0 REV__nc|ENSG00000138161|Q86UP6-3|CUZD1 REV__nc|ENSG00000138161|Q86UP6-3|CUZD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7802734375 2 547.78443 1093.55431 NaN NaN NaN NaN NaN NaN NaN 60.776 1 60.776 60.276 61.276 0 0 0 0 0.23508 1 11658 11658 7.2892 0.93513 1 + 6357 16443 3837 3841 6707 6707 0.011271799381120218 DETNLNAYSDC 11 Unmodified _DETNLNAYSDC_ 0 0 0 REV__nc|ENSG00000205213|Q9BXB1-2|LGR4 REV__nc|ENSG00000205213|Q9BXB1-2|LGR4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7655029296875 2 622.740425 1243.4663 NaN NaN NaN NaN NaN NaN NaN 143.16 1 138.14 137.64 138.64 -5.0261 0 0 0 0.22632 1 27598 27598 0.03141 0 1 + 6358 19582 3838 3842 6708 6708 -0.1456980871482756 DETPRMTI 8 Unmodified _DETPRMTI_ 0 0 0 FREM2|p.F2459Lfs*27|1|0.21|ENSG00000150893|chr13:38859443-38859443|T/-|frameshift_variant;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2 FREM2|p.F2459Lfs*27|1|0.21|ENSG00000150893|chr13:38859443-38859443|T/-|frameshift_variant FREM2|p.F2459Lfs*27|1|0.21|ENSG00000150893|chr13:38859443-38859443|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76507568359375 2 481.734217 961.453881 NaN NaN NaN NaN NaN NaN NaN 57.745 1 54.834 54.334 55.334 -2.9105 0 0 0 0.21323 1 11080 11080 14.582 0 1 6359 4840 3839 3843 6709 6709 -0.02838755596530973 DETQITHL 8 Unmodified _DETQITHL_ 0 0 0 REV__nc|ENSG00000107829|P57775|FBXW4 REV__nc|ENSG00000107829|P57775|FBXW4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7387390136719 2 478.737814 955.461075 0.0030207 1.4461E-06 -0.64509 -0.00030883 -0.64207 -0.00030738 478.7374090536517 47.72 1.2903 44.778 44.134 45.425 -2.9421 58 36 2 0 0 0 8448 1 8651 8651 10.074 5.5969 1 1317200 + 6360 15093 3840 3844 6710 6710 -0.018436997244748454 DETRTIISL 9 Unmodified _DETRTIISL_ 0 0 0 AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant;ENSG00000018510|ENST00000264167|AGPS AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6937255859375 2 524.287671 1046.56079 0.17046 8.937E-05 -0.31214 -0.00016365 -0.14168 -7.4281E-05 524.2874771773438 119.93 1.0915 119.93 119.51 120.6 0 72 30 3 0 0 0 0.078741 1 23658 23658 79.596 30.042 1 27531000 6361 100 3841 3845 6711 6711 0.03937117889495312 DETRTIISL 9 Unmodified _DETRTIISL_ 0 0 0 AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant;ENSG00000018510|ENST00000264167|AGPS AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6914672851562 2 524.287671 1046.56079 0.0033159 1.7385E-06 0.0097915 5.1335E-06 0.013107 6.872E-06 524.2876447939205 124.27 0.97672 119.69 119.13 120.11 -4.5757 79 27 4 0 0 0 0.30018 1 24481 24481 51.415 14.909 1 30083000 6362 100 3841 3845 6712 6712 0.03937117889495312 DETRTIISL 9 Unmodified _DETRTIISL_ 0 0 0 AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant;ENSG00000018510|ENST00000264167|AGPS AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6904296875 2 524.287671 1046.56079 -0.09327 -4.89E-05 0.29918 0.00015686 0.20591 0.00010796 524.2878185928936 124.5 0.94714 119.74 119.25 120.2 -4.7681 72 26 4 0 0 0 0.38759 1 23959 23959 31.728 22.184 1 15020000 6363 100 3841 3845 6713 6713 0.03937117889495312 DETRTIISL 9 Unmodified _DETRTIISL_ 0 0 0 AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant;ENSG00000018510|ENST00000264167|AGPS AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6928100585938 2 524.287671 1046.56079 0.30033 0.00015746 -0.26839 -0.00014071 0.031947 1.675E-05 524.2874795244347 124.3 1.101 119.71 119.2 120.3 -4.5926 85 30 4 0 0 0 0.545 1 23993 23993 29.841 7.1043 1 19526000 6364 100 3841 3845 6714 6714 0.03937117889495312 DETSAITL 8 Unmodified _DETSAITL_ 0 0 0 nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;TCERG1|p.I983Nfs*3|1|0.36|ENSG00000113649|chr5:146507901-146507902|-/A|frameshift_variant;TCERG1|p.I983Sfs*41|1|0.35|ENSG00000113649|chr5:146507902-146507902|A/-|frameshift_variant;ENST00000506524.5_1_5:145862104-145889630:+|nuORF nc|ENSG00000113649|O14776-2|TCERG1 nc|ENSG00000113649|O14776-2|TCERG1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.23626708984375 2 425.21364 848.412728 NaN NaN NaN NaN NaN NaN NaN 96.152 1 92.103 91.603 92.603 -4.0496 0 0 0 0.19492 1 18850 18850 26.341 6.9023 1 6365 2757 3842 3846 6715 6715 -0.017541933643656193 DETTSESDY 9 Unmodified _DETTSESDY_ 0 0 0 ENST00000488605.1_1_13:50096192-50101394:+|nuORF;nc|ENSG00000136147|Q9UIL8-2|PHF11;ENSG00000136147|ENST00000378319|PHF11 ENST00000488605.1_1_13:50096192-50101394:+|nuORF ENST00000488605.1_1_13:50096192-50101394:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6895751953125 2 523.693466 1045.37238 NaN NaN NaN NaN NaN NaN NaN 113.37 1 113.37 112.87 113.87 0 0 0 0 0.19691 1 22292 22292 0.40827 0 1 6366 3985 3843 3847 6716 6716 -0.14849204545453176 DETTVRKL 8 Unmodified _DETTVRKL_ 0 0 0 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7707824707031 2 481.269281 960.52401 0.060334 2.9037E-05 0.23754 0.00011432 0.29787 0.00014336 481.26935043557546 26.369 0.74948 26.369 26.09 26.839 0 56 21 4 0 0 0 0.00062204 4 4633 4582;4633;4671;4676 166.45 42.997 1 22272000 6367 3606 3844 3848 6717;6718;6719;6720 6718 0.04216866063575253 DETTVRKL 8 Unmodified _DETTVRKL_ 0 0 0 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7708435058594 2 481.269281 960.52401 0.87079 0.00041908 -0.47797 -0.00023003 0.39282 0.00018905 481.2690164093313 28.077 0.48989 26.121 25.909 26.399 -1.9561 42 13 4 0 0 0 0.012652 3 4988 4988;5038;5045 144.35 20.9 1 18673000 6368 3606 3844 3848 6721;6722;6723 6721 0.04216866063575253 DETTVRKL 8 Unmodified _DETTVRKL_ 0 0 0 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7709045410156 2 481.269281 960.52401 0.2741 0.00013192 0.15509 7.4642E-05 0.4292 0.00020656 481.26931416521876 27.984 0.56558 26.229 25.93 26.496 -1.7552 44 15 4 0 0 0 0.023497 4 4724 4674;4689;4724;4739 152.41 41.125 1 23493000 6369 3606 3844 3848 6724;6725;6726;6727 6726 0.04216866063575253 DETTVRKL 8 Unmodified _DETTVRKL_ 0 0 0 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77105712890625 2 481.269281 960.52401 0.21282 0.00010242 0.33291 0.00016022 0.54573 0.00026264 481.2693705056099 28.166 0.76581 26.169 25.894 26.66 -1.9962 53 21 4 0 0 0 0.023497 1 4750 4750 152.41 41.125 1 16691000 6370 3606 3844 3848 6728 6728 0.04216866063575253 DETVPVTF 8 Unmodified _DETVPVTF_ 0 0 0 FZD6|p.Y128C|1|0.05|ENSG00000164930|chr8:103324489-103324489|A/G|missense_variant;ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6 FZD6|p.Y128C|1|0.05|ENSG00000164930|chr8:103324489-103324489|A/G|missense_variant FZD6|p.Y128C|1|0.05|ENSG00000164930|chr8:103324489-103324489|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7536926269531 2 454.224008 906.433463 0.097045 4.408E-05 0.17878 8.1208E-05 0.27583 0.00012529 454.2239985709685 122.92 0.70781 118.34 117.96 118.67 -4.5757 29 19 2 0 0 0 0.080209 1 24210 24210 74.396 27.475 1 1572400 6371 5576 3845 3849 6729 6729 -0.023496029847024147 DETVPVTF 8 Unmodified _DETVPVTF_ 0 0 0 FZD6|p.Y128C|1|0.05|ENSG00000164930|chr8:103324489-103324489|A/G|missense_variant;ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6 FZD6|p.Y128C|1|0.05|ENSG00000164930|chr8:103324489-103324489|A/G|missense_variant FZD6|p.Y128C|1|0.05|ENSG00000164930|chr8:103324489-103324489|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 454.224008 906.433463 0.24503 0.0001113 0.14545 6.6069E-05 0.39049 0.00017737 454.2240330156627 118.33 0.53401 118.33 118 118.54 0 -0.0018008 -2.742E-05 NaN 74.396 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1125400 6372 5576 3845 3849 -0.023496029847024147 DETVPVTF 8 Unmodified _DETVPVTF_ 0 0 0 FZD6|p.Y128C|1|0.05|ENSG00000164930|chr8:103324489-103324489|A/G|missense_variant;ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6 FZD6|p.Y128C|1|0.05|ENSG00000164930|chr8:103324489-103324489|A/G|missense_variant FZD6|p.Y128C|1|0.05|ENSG00000164930|chr8:103324489-103324489|A/G|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 454.224008 906.433463 0.42488 0.00019299 -0.18813 -8.5455E-05 0.23674 0.00010753 454.2238248790839 123.18 0.49091 118.45 118.15 118.64 -4.731 0.11518 -0.00033047 NaN 74.396 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1043200 6373 5576 3845 3849 -0.023496029847024147 DETVTVVL 8 Unmodified _DETVTVVL_ 0 0 0 ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 438.73870849609375 2 438.239658 874.464763 0.16337 7.1593E-05 -0.057065 -2.5008E-05 0.1063 4.6585E-05 438.23956558134626 120.67 0.6841 120.67 120.35 121.04 0 24 18 2 0 0 0 0.11797 1 23831 23831 15.478 9.0871 1 1442100 6374 1259 3846 3850 6730 6730 0.022509700493856144 DETVTVVL 8 Unmodified _DETVTVVL_ 0 0 0 ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 438.239658 874.464763 0.010794 4.7305E-06 0.12501 5.4784E-05 0.1358 5.9514E-05 438.2395874501693 125.12 1.1698 120.52 119.98 121.15 -4.5984 -0.052498 9.3156E-05 NaN 15.478 49 32 2 NaN NaN NaN NaN 0 NaN NaN 0 1811300 6375 1259 3846 3850 0.022509700493856144 DETVTVVL 8 Unmodified _DETVTVVL_ 0 0 0 ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 438.239658 874.464763 0.29148 0.00012774 -0.11634 -5.0986E-05 0.17514 7.6753E-05 438.2395329185673 125.38 1.1178 120.61 120.16 121.28 -4.7681 0.034229 -0.00011838 NaN 15.478 52 31 2 NaN NaN NaN NaN 0 NaN NaN 0 2234400 6376 1259 3846 3850 0.022509700493856144 DETVTVVL 8 Unmodified _DETVTVVL_ 0 0 0 ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 438.239658 874.464763 0.056294 2.467E-05 0.13463 5.9E-05 0.19092 8.367E-05 438.23960145604366 125.15 1.0542 120.5 120.14 121.19 -4.6495 -0.078219 0.00010159 NaN 15.478 54 29 3 NaN NaN NaN NaN 0 NaN NaN 0 2257600 6377 1259 3846 3850 0.022509700493856144 DETWTIGDDQ 10 Unmodified _DETWTIGDDQ_ 0 0 0 chr22:23779368-23780359|430|16.83|0.78|4.44|+|ENST00000437086|MMP11,MMP11;ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11 chr22:23779368-23780359|430|16.83|0.78|4.44|+|ENST00000437086|MMP11,MMP11 chr22:23779368-23780359|430|16.83|0.78|4.44|+|ENST00000437086|MMP11,MMP11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2516479492188 2 590.243657 1178.47276 NaN NaN NaN NaN NaN NaN NaN 163.02 1 157.83 157.33 158.33 -5.1878 0 0 0 0.22559 1 31694 31694 17.113 2.2746 1 6378 547 3847 3851 6731 6731 -0.10933547491777063 DEVDLGRSA 9 Unmodified _DEVDLGRSA_ 0 0 0 REV__DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant REV__DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2445068359375 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 127.78 1 123.08 122.58 123.58 -4.6998 0 0 0 0.1761 1 24583 24583 26.884 2.2098 1 + 6379 13657 3848 3852 6732 6732 -0.030568877298605912 DEVDLTSAL 9 Unmodified _DEVDLTSAL_ 0 0 0 nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant nc|ENSG00000106348|P20839-2|IMPDH1 nc|ENSG00000106348|P20839-2|IMPDH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2548828125 2 481.73748 961.460406 0.0038994 1.8785E-06 -0.12649 -6.0934E-05 -0.12259 -5.9056E-05 481.7374513692371 123.07 0.7103 123.07 122.71 123.42 0 33 19 2 0 0 0 0.65155 1 24204 24204 28.487 11.545 1 1654700 6380 2380 3849 3853 6733 6733 -0.02186539164210899 DEVDLTSAL 9 Unmodified _DEVDLTSAL_ 0 0 0 nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant nc|ENSG00000106348|P20839-2|IMPDH1 nc|ENSG00000106348|P20839-2|IMPDH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2546081542969 2 481.73748 961.460406 0.12062 5.8109E-05 -0.28128 -0.0001355 -0.16065 -7.7393E-05 481.7373186293967 127.49 1.156 122.87 122.4 123.55 -4.6172 43 32 2 0 0 0 0.13419 1 25116 25116 50.855 14.811 1 1734400 6381 2380 3849 3853 6734 6734 -0.02186539164210899 DEVDLTSAL 9 Unmodified _DEVDLTSAL_ 0 0 0 nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant nc|ENSG00000106348|P20839-2|IMPDH1 nc|ENSG00000106348|P20839-2|IMPDH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2542724609375 2 481.73748 961.460406 0.21258 0.00010241 -0.84856 -0.00040878 -0.63598 -0.00030638 481.7371778340305 127.67 1.0197 122.88 122.63 123.65 -4.7959 44 28 2 0 0 0 0.054955 1 24539 24539 81.613 20.256 1 1613700 6382 2380 3849 3853 6735 6735 -0.02186539164210899 DEVDRGDEF 9 Unmodified _DEVDRGDEF_ 0 0 0 ENST00000484159.5_1_9:6434093-6493966:+|nuORF;ENSG00000147854|ENST00000276893|UHRF2 ENST00000484159.5_1_9:6434093-6493966:+|nuORF ENST00000484159.5_1_9:6434093-6493966:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2633056640625 2 541.225268 1080.43598 0.015185 8.2187E-06 1.314 0.00071118 1.3292 0.0007194 541.2261333790726 79.198 0.77202 75.394 75.055 75.827 -3.8048 44 21 3 0 0 0 0.76271 1 15054 15054 20.454 0 1 2568800 6383 4719 3850 3854 6736 6736 -0.10101799317703808 DEVEDPRP 8 Unmodified _DEVEDPRP_ 0 0 0 REV__ENSG00000213512|ENST00000294671|GBP7 REV__ENSG00000213512|ENST00000294671|GBP7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7378845214844 2 478.719621 955.42469 0.14084 6.7425E-05 0.094219 4.5104E-05 0.23506 0.00011253 478.71962361364757 35.845 0.86861 33.592 33.019 33.888 -2.2527 41 24 3 0 0 0 0.44415 1 6346 6346 38.151 0 1 2487700 + 6384 19642 3851 3855 6737 6737 -0.05480576621187083 DEVEDPRP 8 Unmodified _DEVEDPRP_ 0 0 0 REV__ENSG00000213512|ENST00000294671|GBP7 REV__ENSG00000213512|ENST00000294671|GBP7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73748779296875 2 478.719621 955.42469 0.2967 0.00014204 0.12452 5.9611E-05 0.42123 0.00020165 478.7196444001607 35.844 0.94865 33.567 32.964 33.913 -2.2766 46 26 2 0 0 0 0.44415 1 6323 6323 38.151 0 1 1893000 + 6385 19642 3851 3855 6738 6738 -0.05480576621187083 DEVEVLIY 8 Unmodified _DEVEVLIY_ 0 0 0 tr|U7SSW2|U7SSW2_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01396PE=3SV=1 tr|U7SSW2|U7SSW2_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01396PE=3SV=1 tr|U7SSW2|U7SSW2_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01396PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2744140625 2 490.252766 978.490978 NaN NaN NaN NaN NaN NaN NaN 77.992 1 74.225 73.725 74.725 -3.7664 0 0 0 0.21452 1 14783 14783 13.508 1.8676 1 6386 26114 3852 3856 6739 6739 0.0008723922085209779 DEVEWTWWVQ 10 Unmodified _DEVEWTWWVQ_ 0 0 0 REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22900390625 3 459.875182 1376.60372 -0.072741 -3.3452E-05 0.22956 0.00010557 0.15681 7.2115E-05 459.8752394991961 136.61 0.88153 131.97 131.6 132.48 -4.6399 54 24 4 0 0 0 0.75679 1 26896 26896 3.5871 0 1 6646500 + 6387 13704 3853 3857 6740 6740 -0.06952112053113524 DEVEWTWWVQ 10 Unmodified _DEVEWTWWVQ_ 0 0 0 REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 459.875182 1376.60372 -0.072741 -3.3452E-05 0.22956 0.00010557 0.15681 7.2115E-05 459.8752394991961 136.61 0.88153 131.97 131.6 132.48 -4.6399 -0.033499 0.00010107 NaN 3.5871 54 24 4 NaN NaN NaN NaN 0 NaN NaN 0 6646500 + 6388 13704 3853 3857 -0.06952112053113524 DEVEWTWWVQ 10 Unmodified _DEVEWTWWVQ_ 0 0 0 REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 459.875182 1376.60372 0.013692 6.2965E-06 0.1984 9.1239E-05 0.21209 9.7535E-05 459.8752424709762 136.91 0.73407 131.98 131.6 132.33 -4.9215 -0.016156 5.8088E-05 NaN 3.5871 52 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6045000 + 6389 13704 3853 3857 -0.06952112053113524 DEVEWTWWVQ 10 Unmodified _DEVEWTWWVQ_ 0 0 0 REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 459.875182 1376.60372 0.22926 0.00010543 0.14463 6.6511E-05 0.37389 0.00017194 459.8752609496828 136.9 0.72769 132.06 131.69 132.41 -4.84 0.055609 -1.6094E-05 NaN 3.5871 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4091700 + 6390 13704 3853 3857 -0.06952112053113524 DEVFFSEKIY 10 Unmodified _DEVFFSEKIY_ 0 0 0 ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF ENST00000557929.5_1_15:78834269-78838932:+|nuORF ENST00000557929.5_1_15:78834269-78838932:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 638.30224609375 2 638.808436 1275.60232 0.40988 0.00026184 0.28662 0.0001831 0.6965 0.00044493 638.8082033908626 146.67 0.55182 146.67 146.39 146.94 0 26 15 2 0 0 0 0.87854 1 29358 29358 13.906 3.8321 1 4430400 6391 1195 3854 3858 6741 6741 -0.024457461418478488 DEVFFSEKIY 10 Unmodified _DEVFFSEKIY_ 0 0 0 ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF ENST00000557929.5_1_15:78834269-78838932:+|nuORF ENST00000557929.5_1_15:78834269-78838932:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 638.808436 1275.60232 1.0444 0.00066716 -0.36769 -0.00023488 0.6767 0.00043228 638.8080272985313 151.74 0.64453 146.98 146.71 147.35 -4.7523 0.10352 -0.00034841 NaN 13.906 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 6877400 6392 1195 3854 3858 -0.024457461418478488 DEVFFSEKIY 10 Unmodified _DEVFFSEKIY_ 0 0 0 ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF ENST00000557929.5_1_15:78834269-78838932:+|nuORF ENST00000557929.5_1_15:78834269-78838932:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 638.808436 1275.60232 0.37804 0.00024149 0.059371 3.7927E-05 0.43741 0.00027942 639.3099995780999 152.21 0.78839 146.97 146.6 147.39 -5.2365 0.092481 0.0001972 NaN 13.906 43 21 3 NaN NaN NaN NaN 0 NaN NaN 0 9158900 6393 1195 3854 3858 -0.024457461418478488 DEVFFSEKIY 10 Unmodified _DEVFFSEKIY_ 0 0 0 ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF ENST00000557929.5_1_15:78834269-78838932:+|nuORF ENST00000557929.5_1_15:78834269-78838932:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 638.808436 1275.60232 0.60595 0.00038709 -0.23691 -0.00015134 0.36903 0.00023574 638.808366741777 152.07 0.74603 146.89 146.52 147.26 -5.1759 0.012536 -0.00018133 NaN 13.906 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4303900 6394 1195 3854 3858 -0.024457461418478488 DEVFLGGSEI 10 Unmodified _DEVFLGGSEI_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2734375 2 533.258579 1064.50261 NaN NaN NaN NaN NaN NaN NaN 134.97 1 130.33 129.83 130.83 -4.6399 0 0 0 2.8426 1 26620 26620 1.0651 0 1 + 6395 23644 3855 3859 6742 6742 -0.02706563755782554 DEVFNLKP 8 Unmodified _DEVFNLKP_ 0 0 0 REV__ENSG00000176994|ENST00000406438|SMCR8 REV__ENSG00000176994|ENST00000406438|SMCR8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25030517578125 2 481.2531 960.491647 0.029095 1.4002E-05 0.5818 0.00027999 0.61089 0.00029399 481.25330423356525 82.992 1.477 79.384 78.604 80.081 -3.6079 155 41 5 0 0 0 0.31517 1 16073 16073 36.044 3.9272 1 53951000 + 6396 18533 3856 3860 6743 6743 0.009820786605587273 DEVFNLKP 8 Unmodified _DEVFNLKP_ 0 0 0 REV__ENSG00000176994|ENST00000406438|SMCR8 REV__ENSG00000176994|ENST00000406438|SMCR8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7658386230469 2 481.2531 960.491647 -0.16247 -7.8188E-05 0.7202 0.0003466 0.55773 0.00026841 481.2533904723 83.001 1.4887 79.303 78.481 79.97 -3.6985 161 42 5 0 0 0 0.54916 2 15704 15700;15704 25.399 0.72543 1 61137000 + 6397 18533 3856 3860 6744;6745 6745 0.009820786605587273 DEVFPDPDL 9 Unmodified _DEVFPDPDL_ 0 0 0 ENST00000484207.5_1_14:96131359-96134831:+|nuORF ENST00000484207.5_1_14:96131359-96134831:+|nuORF ENST00000484207.5_1_14:96131359-96134831:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6861572265625 2 523.73748 1045.46041 NaN NaN NaN NaN NaN NaN NaN 126.58 1 126.58 126.08 127.08 0 0 0 0 0.23508 1 24981 24981 11.64 0 1 6398 10429 3857 3861 6746 6746 -0.06050539164175461 DEVFVNKL 8 Unmodified _DEVFVNKL_ 0 0 0 ENST00000495790.1_1_10:32581422-32635732:-|nuORF;nc|ENSG00000120616|Q9H2F5-3|EPC1;EPC1|p.V808Rfs*9|1|0.18|ENSG00000120616|chr10:32271569-32271570|AC/-|frameshift_variant;ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1 ENST00000495790.1_1_10:32581422-32635732:-|nuORF ENST00000495790.1_1_10:32581422-32635732:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7689514160156 2 482.260925 962.507297 0.38196 0.00018421 -0.16585 -7.9982E-05 0.21611 0.00010422 482.26071948430575 100.68 0.83978 100.68 100.1 100.94 0 31 23 2 0 0 0 0.9383 1 19744 19744 25.399 9.5521 1 953470 6399 3141 3858 3862 6747 6747 0.02454365177618456 DEVHGYKN 8 Unmodified _DEVHGYKN_ 0 0 0 tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1 tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1 tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24334716796875 2 481.222331 960.430109 NaN NaN NaN NaN NaN NaN NaN 130.47 1 130.47 129.97 130.97 0 0 0 0 0.23025 1 25788 25788 0.25148 0.18749 1 6400 26220 3859 3863 6748 6748 -0.05168853038708221 DEVHGYKN 8 Unmodified _DEVHGYKN_ 0 0 0 tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1 tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1 tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2408142089844 2 481.222331 960.430109 NaN NaN NaN NaN NaN NaN NaN 140.41 1 135.76 135.26 136.26 -4.6493 0 0 0 0.21486 1 27722 27722 8.5933 3.3626 1 6401 26220 3859 3863 6749 6749 -0.05168853038708221 DEVIGQVL 8 Unmodified _DEVIGQVL_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22894287109375 2 436.739825 871.465098 0.15497 6.7681E-05 -0.15359 -6.7079E-05 0.0013785 6.0206E-07 436.7396865789358 119.92 1.0893 119.92 119.44 120.53 0 75 30 3 0 0 0 0.039878 3 23630 23630;23635;23697 101.72 41.138 1 31639000 6402 1450 3860 3864 6750;6751;6752 6750 0.024223897692422725 DEVIGQVL 8 Unmodified _DEVIGQVL_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22772216796875 2 436.739825 871.465098 0.026823 1.1715E-05 0.015828 6.9125E-06 0.042651 1.8627E-05 436.73978253312737 124.38 1.295 119.8 119.31 120.6 -4.5757 104 36 4 0 0 0 8448 2 24459 24459;24628 64.86 31.267 1 55949000 6403 1450 3860 3864 6753;6754 6753 0.024223897692422725 DEVIGQVL 8 Unmodified _DEVIGQVL_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2147216796875 2 436.739825 871.465098 0.33698 0.00014717 -0.22061 -9.635E-05 0.11637 5.0822E-05 436.7396501945363 124.68 1.41 119.91 119.42 120.83 -4.7681 103 39 4 0 0 0 0.039878 2 23899 23899;24038 101.72 12.295 1 35320000 6404 1450 3860 3864 6755;6756 6755 0.024223897692422725 DEVIGQVL 8 Unmodified _DEVIGQVL_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2169494628906 2 436.739825 871.465098 0.064805 2.8303E-05 0.026539 1.1591E-05 0.091344 3.9894E-05 436.7397800863906 124.49 1.2937 119.84 119.27 120.57 -4.6495 95 35 4 0 0 0 0.039878 3 23935 23881;23897;23935 101.72 31.267 1 41556000 6405 1450 3860 3864 6757;6758;6759 6759 0.024223897692422725 DEVIHGIF 8 Unmodified _DEVIHGIF_ 0 0 0 TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3 TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2396545410156 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 131.61 1 131.61 131.11 132.11 0 0 0 0 0.020965 1 26013 26013 67.035 17.366 1 6406 1334 3861 3865 6760 6760 -0.0016619051091311121 DEVIHGIF 8 Unmodified _DEVIHGIF_ 0 0 0 TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3 TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2399597167969 2 465.239993 928.465432 -0.050334 -2.3418E-05 0.046084 2.144E-05 -0.0042499 -1.9772E-06 465.23983172698115 136.18 0.48691 131.54 131.36 131.85 -4.6399 18 13 2 0 0 0 0.13334 3 26904 26832;26852;26904 56.541 24.424 1 1539800 6407 1334 3861 3865 6761;6762;6763 6763 -0.0016619051091311121 DEVIHGIF 8 Unmodified _DEVIHGIF_ 0 0 0 TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3 TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2398681640625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 136.56 1 131.66 131.16 132.16 -4.8951 0 0 0 0.036493 1 26242 26242 56.541 24.424 1 6408 1334 3861 3865 6764 6764 -0.0016619051091311121 DEVIHGIF 8 Unmodified _DEVIHGIF_ 0 0 0 TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3 TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant TNPO3|p.N628Mfs*22|1|0.13|ENSG00000064419|chr7:128980008-128980008|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2400207519531 2 465.239993 928.465432 0.22961 0.00010683 -0.25204 -0.00011726 -0.022431 -1.0436E-05 465.239803119228 136.4 0.5723 131.57 131.27 131.84 -4.8307 30 15 3 0 0 0 0.13334 2 26231 26231;26277 56.541 24.424 1 1573500 6409 1334 3861 3865 6765;6766 6765 -0.0016619051091311121 DEVIIEQF 8 Unmodified _DEVIIEQF_ 0 0 0 ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2 ENSG00000135775|ENST00000366669|COG2 ENSG00000135775|ENST00000366669|COG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 497.75299072265625 2 496.75039 991.486227 0.1948 9.6767E-05 -1.2878 -0.00063973 -1.093 -0.00054296 496.75039805308705 138.81 1.2568 138.81 138.28 139.54 0 101 35 4 0 0 0 8448 1 27507 27507 113.99 91.371 1 71231000 6410 3951 3862 3866 6767 6767 -0.009856449219000751 DEVIIEQF 8 Unmodified _DEVIIEQF_ 0 0 0 ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2 ENSG00000135775|ENST00000366669|COG2 ENSG00000135775|ENST00000366669|COG2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 496.75039 991.486227 0.10322 5.1275E-05 -1.1079 -0.00055034 -1.0047 -0.00049907 496.7504377686783 143.69 1.5345 139.03 138.54 140.07 -4.656 0.080576 -5.3486E-05 NaN 113.99 121 43 4 NaN NaN NaN NaN 0 NaN NaN 0 71648000 6411 3951 3862 3866 -0.009856449219000751 DEVIIEQF 8 Unmodified _DEVIIEQF_ 0 0 0 ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2 ENSG00000135775|ENST00000366669|COG2 ENSG00000135775|ENST00000366669|COG2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 496.75039 991.486227 0.022003 1.093E-05 -0.65645 -0.00032609 -0.63445 -0.00031516 496.75046950142274 144.09 1.4867 139.03 138.52 140.01 -5.0671 0.073552 0.00039501 NaN 113.99 124 42 4 NaN NaN NaN NaN 0 NaN NaN 0 88472000 6412 3951 3862 3866 -0.009856449219000751 DEVIIEQF 8 Unmodified _DEVIIEQF_ 0 0 0 ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2 ENSG00000135775|ENST00000366669|COG2 ENSG00000135775|ENST00000366669|COG2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 496.75039 991.486227 0.11799 5.8613E-05 -1.3969 -0.00069393 -1.2789 -0.00063531 496.7504654542799 143.88 1.7732 138.94 138.46 140.24 -4.9435 -0.014015 -0.00034065 NaN 113.99 139 50 6 NaN NaN NaN NaN 0 NaN NaN 0 68205000 6413 3951 3862 3866 -0.009856449219000751 DEVIITGY 8 Unmodified _DEVIITGY_ 0 0 0 ENST00000559217.1_1_15:80469766-80478548:+|nuORF;nc|ENSG00000103876|P16930-2|FAH;ENSG00000103876|ENST00000561421|FAH ENST00000559217.1_1_15:80469766-80478548:+|nuORF ENST00000559217.1_1_15:80469766-80478548:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 910.3811645507812 1 909.45639 908.449113 0.76834 0.00069877 -0.3541 -0.00032204 0.41424 0.00037673 909.4559360593021 105.91 0.90002 105.91 105.6 106.5 0 55 25 3 0 0 0 0.087158 1 20789 20789 77.984 17.595 1 14095000 6414 2208 3863 3867 6768 6768 -0.008773164676654233 DEVIITGY 8 Unmodified _DEVIITGY_ 0 0 0 ENST00000559217.1_1_15:80469766-80478548:+|nuORF;nc|ENSG00000103876|P16930-2|FAH;ENSG00000103876|ENST00000561421|FAH ENST00000559217.1_1_15:80469766-80478548:+|nuORF ENST00000559217.1_1_15:80469766-80478548:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.4066772460938 1 909.45639 908.449113 -0.15014 -0.00013655 0.61727 0.00056138 0.46713 0.00042484 909.4568825589873 110.51 1.0422 106.09 105.78 106.82 -4.4231 65 29 3 0 0 0 0.07308 1 21764 21764 70.716 7.1527 1 14917000 6415 2208 3863 3867 6769 6769 -0.008773164676654233 DEVIITGY 8 Unmodified _DEVIITGY_ 0 0 0 ENST00000559217.1_1_15:80469766-80478548:+|nuORF;nc|ENSG00000103876|P16930-2|FAH;ENSG00000103876|ENST00000561421|FAH ENST00000559217.1_1_15:80469766-80478548:+|nuORF ENST00000559217.1_1_15:80469766-80478548:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 909.45639 908.449113 0.087173 7.928E-05 0.4257 0.00038716 0.51287 0.00046644 909.4566141574472 110.6 1.1376 106.11 105.82 106.96 -4.4915 0.045856 0.00030685 NaN 70.716 73 31 3 NaN NaN NaN NaN 0 NaN NaN 0 9130200 6416 2208 3863 3867 -0.008773164676654233 DEVIITGY 8 Unmodified _DEVIITGY_ 0 0 0 ENST00000559217.1_1_15:80469766-80478548:+|nuORF;nc|ENSG00000103876|P16930-2|FAH;ENSG00000103876|ENST00000561421|FAH ENST00000559217.1_1_15:80469766-80478548:+|nuORF ENST00000559217.1_1_15:80469766-80478548:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 909.45639 908.449113 0.77622 0.00070594 -0.29952 -0.0002724 0.4767 0.00043354 909.4559884360607 110.34 1.1584 106.15 105.82 106.98 -4.1891 0.085733 -0.00035271 NaN 70.716 72 32 3 NaN NaN NaN NaN 0 NaN NaN 0 12199000 6417 2208 3863 3867 -0.008773164676654233 DEVIVNQY 8 Unmodified _DEVIVNQY_ 0 0 0 ENSG00000212864|ENST00000391553|RNF208 ENSG00000212864|ENST00000391553|RNF208 ENSG00000212864|ENST00000391553|RNF208 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2647399902344 2 490.24019 978.465826 0.23808 0.00011672 -0.88728 -0.00043498 -0.6492 -0.00031826 490.2397969026054 36.57 0.67515 36.57 36.317 36.993 0 25 18 2 0 0 0 0.60622 1 6713 6713 21.747 0.20967 1 962820 6418 7680 3864 3868 6770 6770 -0.0242681558172535 DEVKFKSF 8 Unmodified _DEVKFKSF_ 0 0 0 ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;JADE2|p.P642Hfs*26|1|0.27|ENSG00000043143|chr5:134578865-134578865|G/-|frameshift_variant;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2 ENST00000470876.1_1_5:133900168-133909634:+|nuORF ENST00000470876.1_1_5:133900168-133909634:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.79632568359375 3 333.843042 998.507297 -0.63639 -0.00021245 0.4099 0.00013684 -0.22649 -7.5614E-05 333.8431466073964 70.141 0.56818 70.141 69.707 70.275 0 19 15 2 0 0 0 8448 1 13583 13583 36.506 21.668 1 1538300 6419 10204 3865 3869 6771 6771 0.007983651776271472 DEVKFKSF 8 Unmodified _DEVKFKSF_ 0 0 0 ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;JADE2|p.P642Hfs*26|1|0.27|ENSG00000043143|chr5:134578865-134578865|G/-|frameshift_variant;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2 ENST00000470876.1_1_5:133900168-133909634:+|nuORF ENST00000470876.1_1_5:133900168-133909634:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 333.843042 998.507297 -0.38027 -0.00012695 0.17948 5.9919E-05 -0.20079 -6.7031E-05 333.8430742867204 73.319 0.46588 70.008 69.778 70.244 -3.3107 0.017928 0.00010752 NaN 36.506 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1453600 6420 10204 3865 3869 0.007983651776271472 DEVKFKSF 8 Unmodified _DEVKFKSF_ 0 0 0 ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;JADE2|p.P642Hfs*26|1|0.27|ENSG00000043143|chr5:134578865-134578865|G/-|frameshift_variant;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2 ENST00000470876.1_1_5:133900168-133909634:+|nuORF ENST00000470876.1_1_5:133900168-133909634:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 333.843042 998.507297 0.22578 7.5376E-05 -0.74624 -0.00024913 -0.52045 -0.00017375 333.84279346710997 73.555 0.49278 69.878 69.614 70.107 -3.6764 -0.11213 -0.00081962 NaN 36.506 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 631180 6421 10204 3865 3869 0.007983651776271472 DEVKFKSF 8 Unmodified _DEVKFKSF_ 0 0 0 ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;JADE2|p.P642Hfs*26|1|0.27|ENSG00000043143|chr5:134578865-134578865|G/-|frameshift_variant;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2 ENST00000470876.1_1_5:133900168-133909634:+|nuORF ENST00000470876.1_1_5:133900168-133909634:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 333.843042 998.507297 -0.31327 -0.00010458 0.31075 0.00010374 -0.0025222 -8.4203E-07 333.8431188826267 73.529 0.49438 69.935 69.657 70.151 -3.594 -0.055853 0.00023899 NaN 36.506 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1073100 6422 10204 3865 3869 0.007983651776271472 DEVKLIGF 8 Unmodified _DEVKLIGF_ 0 0 0 ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39;ENSG00000198648|ENST00000355999|STK39 ENST00000487143.5_1_2:168812008-168969496:-|nuORF ENST00000487143.5_1_2:168812008-168969496:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2425537109375 2 460.758018 919.501483 -0.0049424 -2.2773E-06 0.24652 0.00011359 0.24158 0.00011131 460.7580367352311 145.85 0.94067 141.16 140.67 141.61 -4.6868 79 26 4 0 0 0 0.18374 1 28839 28839 56.177 2.6015 1 40910000 6423 7467 3866 3870 6772 6772 0.03851266665969888 DEVKLIGF 8 Unmodified _DEVKLIGF_ 0 0 0 ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39;ENSG00000198648|ENST00000355999|STK39 ENST00000487143.5_1_2:168812008-168969496:-|nuORF ENST00000487143.5_1_2:168812008-168969496:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.52813720703125 2 460.758018 919.501483 0.063882 2.9434E-05 0.18738 8.6336E-05 0.25126 0.00011577 460.75802250058837 146.28 1.0287 141.17 140.69 141.72 -5.1108 86 29 4 0 0 0 0.13517 1 28340 28340 56.177 11.77 1 33813000 6424 7467 3866 3870 6773 6773 0.03851266665969888 DEVKLIGF 8 Unmodified _DEVKLIGF_ 0 0 0 ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39;ENSG00000198648|ENST00000355999|STK39 ENST00000487143.5_1_2:168812008-168969496:-|nuORF ENST00000487143.5_1_2:168812008-168969496:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.758018 919.501483 0.21342 9.8336E-05 0.040006 1.8433E-05 0.25343 0.00011677 460.757954447753 141.24 0.88879 141.24 140.82 141.71 0 0.045976 -6.1022E-05 NaN 56.177 68 25 3 NaN NaN NaN NaN 0 NaN NaN 0 35065000 6425 7467 3866 3870 0.03851266665969888 DEVKLIGF 8 Unmodified _DEVKLIGF_ 0 0 0 ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39;ENSG00000198648|ENST00000355999|STK39 ENST00000487143.5_1_2:168812008-168969496:-|nuORF ENST00000487143.5_1_2:168812008-168969496:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 460.758018 919.501483 0.3136 0.00014449 0.013709 6.3167E-06 0.32731 0.00015081 460.75796579824447 146.2 1.0736 141.2 140.6 141.67 -5 0.0094838 -8.5255E-05 NaN 56.177 88 30 4 NaN NaN NaN NaN 0 NaN NaN 0 37045000 6426 7467 3866 3870 0.03851266665969888 DEVKRGVL 8 Unmodified _DEVKRGVL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;ENST00000492091.1_1_2:136609063-136622601:-|nuORF ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23876953125 2 458.266542 914.51853 NaN NaN NaN NaN NaN NaN NaN 124.51 1 119.86 119.36 120.36 -4.6495 0 0 0 0.21323 1 23958 23958 14.582 4.3983 1 6427 1532 3867 3871 6774 6774 0.05785187271760606 DEVKSTIKF 9 Unmodified _DEVKSTIKF_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000427498.1_1_1:242528894-242529077:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26708984375 2 533.792589 1065.57063 -0.15084 -8.0516E-05 -0.16717 -8.9233E-05 -0.318 -0.00016975 533.7924124093947 69.376 0.81039 69.376 68.966 69.777 0 72 22 4 0 0 0 0.018239 1 13435 13435 97.741 41.564 1 43502000 6428 7487 3868 3872 6775 6775 0.04046305894848956 DEVKSTIKF 9 Unmodified _DEVKSTIKF_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000427498.1_1_1:242528894-242529077:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2860717773438 2 533.792589 1065.57063 -0.038436 -2.0517E-05 0.089698 4.788E-05 0.051261 2.7363E-05 533.792550140778 72.446 0.92862 69.136 68.67 69.599 -3.3107 81 25 4 0 0 0 0.036328 1 14149 14149 84.522 46.347 1 41984000 6429 7487 3868 3872 6776 6776 0.04046305894848956 DEVKSTIKF 9 Unmodified _DEVKSTIKF_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000427498.1_1_1:242528894-242529077:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.286865234375 2 533.792589 1065.57063 0.61492 0.00032824 -0.47512 -0.00025362 0.1398 7.4627E-05 533.7922579149318 72.731 0.86059 69.103 68.696 69.557 -3.6275 74 23 4 0 0 0 0.018239 1 13750 13750 107.56 65.608 1 40187000 6430 7487 3868 3872 6777 6777 0.04046305894848956 DEVKSTIKF 9 Unmodified _DEVKSTIKF_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000427498.1_1_1:242528894-242529077:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.0878601074219 3 356.197485 1065.57063 -0.32021 -0.00011406 0.28719 0.0001023 -0.033026 -1.1764E-05 356.1974985684212 72.684 0.90108 69.146 68.676 69.577 -3.5385 86 25 4 0 0 0 0.8319 1 13867 13867 2.4985 0 1 26650000 6431 7487 3868 3872 6778 6778 0.04046305894848956 DEVKSTIKF 9 Unmodified _DEVKSTIKF_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000427498.1_1_1:242528894-242529077:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2862548828125 2 533.792589 1065.57063 0.42223 0.00022538 -0.38485 -0.00020543 0.037377 1.9952E-05 533.7922626852925 72.68 0.9688 69.141 68.676 69.645 -3.5385 80 27 4 0 0 0 0.028868 1 13754 13754 97.741 39.062 1 44515000 6432 7487 3868 3872 6779 6779 0.04046305894848956 DEVLINAQY 9 Unmodified _DEVLINAQY_ 0 0 0 REV__ENSG00000145723|ENST00000399004|GIN1 REV__ENSG00000145723|ENST00000399004|GIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.268798828125 2 532.766571 1063.51859 -0.04957 -2.6409E-05 0.12626 6.7266E-05 0.076689 4.0857E-05 532.7665502126906 72.757 0.75295 69.447 68.99 69.743 -3.3107 28 20 2 0 0 0 0.46541 1 14162 14162 21.747 0.20967 1 2050000 + 6433 16849 3869 3873 6780 6780 -0.010628575189002731 DEVLLQKL 8 Unmodified _DEVLLQKL_ 0 0 0 ENST00000556254.1_1_14:35579616-35591165:-|nuORF;ENST00000557773.5_1_14:35568434-35591165:-|nuORF;ENSG00000092020|ENST00000261475|PPP2R3C ENST00000556254.1_1_14:35579616-35591165:-|nuORF ENST00000556254.1_1_14:35579616-35591165:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73406982421875 2 479.2844 956.554247 0.15491 7.4247E-05 0.24009 0.00011507 0.395 0.00018932 479.2843219114327 125.29 0.71369 120.69 120.3 121.01 -4.5984 42 19 3 0 0 0 0.44415 1 24711 24711 30.225 13.283 1 3049400 6434 1820 3870 3874 6781 6781 0.0742322472875685 DEVLLQKL 8 Unmodified _DEVLLQKL_ 0 0 0 ENST00000556254.1_1_14:35579616-35591165:-|nuORF;ENST00000557773.5_1_14:35568434-35591165:-|nuORF;ENSG00000092020|ENST00000261475|PPP2R3C ENST00000556254.1_1_14:35579616-35591165:-|nuORF ENST00000556254.1_1_14:35579616-35591165:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.731689453125 2 479.2844 956.554247 0.32531 0.00015592 -0.14333 -6.8697E-05 0.18198 8.7219E-05 479.2842972283808 125.51 0.73775 120.74 120.4 121.14 -4.7681 34 20 2 0 0 0 0.79951 1 24131 24131 29.841 11.467 1 2406200 6435 1820 3870 3874 6782 6782 0.0742322472875685 DEVLLQKL 8 Unmodified _DEVLLQKL_ 0 0 0 ENST00000556254.1_1_14:35579616-35591165:-|nuORF;ENST00000557773.5_1_14:35568434-35591165:-|nuORF;ENSG00000092020|ENST00000261475|PPP2R3C ENST00000556254.1_1_14:35579616-35591165:-|nuORF ENST00000556254.1_1_14:35579616-35591165:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7323913574219 2 479.2844 956.554247 0.19792 9.486E-05 0.28269 0.00013549 0.48061 0.00023035 479.2844395351932 125.5 0.6226 120.85 120.53 121.15 -4.6495 33 17 3 0 0 0 0.69702 1 24154 24154 43.772 25.399 1 2656100 6436 1820 3870 3874 6783 6783 0.0742322472875685 DEVNGLISM 9 Unmodified _DEVNGLISM_ 0 0 0 nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2 nc|ENSG00000108883|Q15029-2|EFTUD2 nc|ENSG00000108883|Q15029-2|EFTUD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2574462890625 2 489.23405 976.453547 0.18571 9.0856E-05 0.013478 6.5938E-06 0.19919 9.745E-05 489.2340192695844 125.84 1.1746 125.84 125.29 126.47 0 72 32 3 0 0 0 0.15214 3 24846 24781;24805;24846 43.858 14.38 1 20545000 6437 2502 3871 3875 6784;6785;6786 6786 -0.03562175316403682 DEVNGLISM 9 Unmodified _DEVNGLISM_ 0 0 0 nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2 nc|ENSG00000108883|Q15029-2|EFTUD2 nc|ENSG00000108883|Q15029-2|EFTUD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27130126953125 2 489.23405 976.453547 0.1172 5.734E-05 -0.17465 -8.5443E-05 -0.057441 -2.8102E-05 489.2340108386123 130.4 1.3143 125.76 125.26 126.57 -4.6359 102 36 4 0 0 0 0.068672 2 25657 25657;25764 54.068 50.964 1 32067000 6438 2502 3871 3875 6787;6788 6787 -0.03562175316403682 DEVNGLISM 9 Unmodified _DEVNGLISM_ 0 0 0 nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2 nc|ENSG00000108883|Q15029-2|EFTUD2 nc|ENSG00000108883|Q15029-2|EFTUD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2744445800781 2 489.23405 976.453547 -0.073033 -3.573E-05 0.12872 6.2976E-05 0.05569 2.7246E-05 489.2340916242904 130.59 1.174 125.82 125.35 126.53 -4.7725 90 33 4 0 0 0 0.053942 3 25133 25082;25133;25174 69.105 36.238 1 21373000 6439 2502 3871 3875 6789;6790;6791 6790 -0.03562175316403682 DEVNGLISM 9 Unmodified _DEVNGLISM_ 0 0 0 nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2 nc|ENSG00000108883|Q15029-2|EFTUD2 nc|ENSG00000108883|Q15029-2|EFTUD2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.23405 976.453547 0.14917 7.2981E-05 -0.13252 -6.4835E-05 0.016651 8.1463E-06 489.23401270632763 130.77 1.3237 125.94 125.36 126.69 -4.8355 0.096896 -8.4894E-05 NaN 69.105 96 37 4 NaN NaN NaN NaN 0 NaN NaN 0 27514000 6440 2502 3871 3875 -0.03562175316403682 DEVPEQKL 8 Unmodified _DEVPEQKL_ 0 0 0 REV__MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant REV__MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7341613769531 2 479.248015 956.481476 0.1073 5.1422E-05 -0.097589 -4.6769E-05 0.0097081 4.6526E-06 479.2479388370895 114 0.72851 109.44 108.96 109.69 -4.555 27 20 2 0 0 0 0.8784 1 21840 21840 3.5871 0 1 1157600 + 6441 17447 3872 3876 6792 6792 0.001494709353323742 DEVPEQKL 8 Unmodified _DEVPEQKL_ 0 0 0 REV__MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant REV__MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.248015 956.481476 -0.10342 -4.9563E-05 0.1889 9.053E-05 0.085483 4.0967E-05 479.2479921294101 113.74 0.59026 109.28 108.9 109.49 -4.4539 -0.065221 0.00026248 NaN 3.5871 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1187300 + 6442 17447 3872 3876 0.001494709353323742 DEVPEQKL 8 Unmodified _DEVPEQKL_ 0 0 0 REV__MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant REV__MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 479.248015 956.481476 0.54273 0.0002601 -0.31262 -0.00014982 0.23011 0.00011028 479.2478357424886 113.59 0.62788 109.32 108.99 109.62 -4.2725 -0.029021 -0.00021823 NaN 3.5871 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1123200 + 6443 17447 3872 3876 0.001494709353323742 DEVPVGVEM 9 Unmodified _DEVPVGVEM_ 0 0 0 nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-2|ZMYM4 nc|ENSG00000146463|Q5VZL5-2|ZMYM4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 489.23223876953125 2 487.7286 973.442648 0.38034 0.0001855 -0.23011 -0.00011223 0.15023 7.3269E-05 487.72845014266943 110.47 1.1259 106.24 105.67 106.8 -4.2289 102 31 4 0 0 0 0.28246 1 21221 21221 11.749 11.068 1 18741000 6444 4657 3873 3877 6793 6793 -0.04513577690681814 DEVPVGVEM 9 Unmodified _DEVPVGVEM_ 0 0 0 nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-2|ZMYM4 nc|ENSG00000146463|Q5VZL5-2|ZMYM4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 487.7286 973.442648 0.4085 0.00019924 -0.2836 -0.00013832 0.1249 6.0916E-05 487.7284488782349 106.01 1.0088 106.01 105.57 106.57 0 -0.13754 -0.00029159 NaN 11.749 70 28 3 NaN NaN NaN NaN 0 NaN NaN 0 13456000 6445 4657 3873 3877 -0.04513577690681814 DEVPVGVEM 9 Unmodified _DEVPVGVEM_ 0 0 0 nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-2|ZMYM4 nc|ENSG00000146463|Q5VZL5-2|ZMYM4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 487.7286 973.442648 -0.22608 -0.00011027 0.31979 0.00015597 0.093706 4.5703E-05 487.72876192241796 110.51 1.32 106.08 105.57 106.89 -4.4231 -0.067354 0.00029699 NaN 11.749 93 37 4 NaN NaN NaN NaN 0 NaN NaN 0 25685000 6446 4657 3873 3877 -0.04513577690681814 DEVPVGVEM 9 Unmodified _DEVPVGVEM_ 0 0 0 nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-2|ZMYM4 nc|ENSG00000146463|Q5VZL5-2|ZMYM4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 487.7286 973.442648 -0.0038897 -1.8971E-06 0.12117 5.9099E-05 0.11728 5.7202E-05 487.72863743103335 110.76 1.445 106.27 105.55 107 -4.4915 0.11419 0.00010325 NaN 11.749 97 40 4 NaN NaN NaN NaN 0 NaN NaN 0 21627000 6447 4657 3873 3877 -0.04513577690681814 DEVQEVVY 8 Unmodified _DEVQEVVY_ 0 0 0 nc|ENSG00000144306|Q0VDG4-2|SCRN3;SCRN3|p.A79Gfs*7|1|0.4|ENSG00000144306|chr2:174399991-174399992|-/G|frameshift_variant;SCRN3|p.F309Lfs*26|1|0.06|ENSG00000144306|chr2:174424480-174424480|T/-|frameshift_variant;SCRN3|p.N391Kfs*5|1|0.32|ENSG00000144306|chr2:174427788-174427789|-/A|frameshift_variant;ENSG00000136193|ENST00000242059|SCRN1;ENSG00000144306|ENST00000272732|SCRN3;nc|ENSG00000136193|Q12765-2|SCRN1 nc|ENSG00000144306|Q0VDG4-2|SCRN3 nc|ENSG00000144306|Q0VDG4-2|SCRN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26190185546875 2 490.732197 979.449842 0.51169 0.0002511 0.00012486 6.1271E-08 0.51182 0.00025117 490.7322369830803 77.549 0.38038 77.549 77.357 77.737 0 15 10 2 0 0 0 0.20134 1 15097 15097 71.134 6.8973 1 1829900 6448 12365 3874 3878 6794 6794 -0.04070521818607631 DEVQEVVY 8 Unmodified _DEVQEVVY_ 0 0 0 nc|ENSG00000144306|Q0VDG4-2|SCRN3;SCRN3|p.A79Gfs*7|1|0.4|ENSG00000144306|chr2:174399991-174399992|-/G|frameshift_variant;SCRN3|p.F309Lfs*26|1|0.06|ENSG00000144306|chr2:174424480-174424480|T/-|frameshift_variant;SCRN3|p.N391Kfs*5|1|0.32|ENSG00000144306|chr2:174427788-174427789|-/A|frameshift_variant;ENSG00000136193|ENST00000242059|SCRN1;ENSG00000144306|ENST00000272732|SCRN3;nc|ENSG00000136193|Q12765-2|SCRN1 nc|ENSG00000144306|Q0VDG4-2|SCRN3 nc|ENSG00000144306|Q0VDG4-2|SCRN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.255615234375 2 490.732197 979.449842 0.27348 0.0001342 0.27702 0.00013594 0.5505 0.00027015 490.7320154181921 104.01 0.795 99.666 99.283 100.08 -4.346 43 22 3 0 0 0 0.96386 1 19870 19870 14.838 0 1 2763000 6449 12365 3874 3878 6795 6795 -0.04070521818607631 DEVQVVRGHY 10 Unmodified _DEVQVVRGHY_ 0 0 0 ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1 ENST00000495104.1_1_4:165841962-165842070:-|nuORF ENST00000495104.1_1_4:165841962-165842070:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2805786132812 2 601.301644 1200.58874 0.7844 0.00047166 -0.47069 -0.00028303 0.31371 0.00018863 601.3013283095008 53.021 0.86847 50.138 49.689 50.558 -2.8837 64 24 4 0 0 0 0.096197 1 10036 10036 61.602 47.696 1 13711000 6450 1176 3875 3879 6796 6796 -0.0035355913041712483 DEVQVVRGHY 10 Unmodified _DEVQVVRGHY_ 0 0 0 ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1 ENST00000495104.1_1_4:165841962-165842070:-|nuORF ENST00000495104.1_1_4:165841962-165842070:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 601.301644 1200.58874 0.59297 0.00035655 -0.36516 -0.00021957 0.22781 0.00013698 601.3013974753385 50.091 0.95634 50.091 49.547 50.504 0 -0.0844 -0.00017713 NaN 61.602 80 27 4 NaN NaN NaN NaN 0 NaN NaN 0 19151000 6451 1176 3875 3879 -0.0035355913041712483 DEVQVVRGHY 10 Unmodified _DEVQVVRGHY_ 0 0 0 ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1 ENST00000495104.1_1_4:165841962-165842070:-|nuORF ENST00000495104.1_1_4:165841962-165842070:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 601.301644 1200.58874 0.40592 0.00024408 -0.06714 -4.0372E-05 0.33878 0.00020371 601.3015678561621 53.339 0.77484 50.252 49.832 50.607 -3.0876 0.075914 0.00018127 NaN 61.602 64 21 4 NaN NaN NaN NaN 0 NaN NaN 0 14524000 6452 1176 3875 3879 -0.0035355913041712483 DEVQVVRGHY 10 Unmodified _DEVQVVRGHY_ 0 0 0 ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1 ENST00000495104.1_1_4:165841962-165842070:-|nuORF ENST00000495104.1_1_4:165841962-165842070:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 601.301644 1200.58874 0.02846 1.7113E-05 0.35435 0.00021307 0.38281 0.00023019 601.301784110467 53.318 0.81831 50.222 49.795 50.614 -3.0954 0.04667 0.00068816 NaN 61.602 74 23 4 NaN NaN NaN NaN 0 NaN NaN 0 12485000 6453 1176 3875 3879 -0.0035355913041712483 DEVSPIKK 8 Unmodified _DEVSPIKK_ 0 0 0 REV__nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1 REV__nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2383728027344 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 70.206 1 70.206 69.706 70.706 0 0 0 0 0.20462 1 13596 13596 21.747 4.8044 1 + 6454 16998 3876 3880 6797 6797 0.04662365177614447 DEVTALASL 9 Unmodified _DEVTALASL_ 0 0 0 REV__nc|ENSG00000115825|O94806-2|PRKD3 REV__nc|ENSG00000115825|O94806-2|PRKD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2452392578125 2 459.742565 917.470577 0.15024 6.907E-05 -0.45196 -0.00020779 -0.30172 -0.00013871 459.74218285568793 87.748 0.53098 83.997 83.588 84.118 -3.7501 23 14 2 0 0 0 0.54354 1 16806 16806 16.942 0 1 764710 + 6455 15452 3877 3881 6798 6798 0.008540685610341825 DEVTGELGV 9 Unmodified _DEVTGELGV_ 0 0 0 DCHS2|p.A454V|1|0.32|ENSG00000197410|chr4:154489995-154489995|G/A|missense_variant DCHS2|p.A454V|1|0.32|ENSG00000197410|chr4:154489995-154489995|G/A|missense_variant DCHS2|p.A454V|1|0.32|ENSG00000197410|chr4:154489995-154489995|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2267761230469 2 459.724372 917.434192 -0.10168 -4.6746E-05 0.22852 0.00010505 0.12683 5.8308E-05 459.72437031737076 68.413 0.75227 68.413 68.071 68.823 0 43 20 3 0 0 0 0.35443 1 13299 13299 28.487 3.0875 1 3872000 6456 790 3878 3882 6799 6799 -0.027828083356666866 DEVTGELGV 9 Unmodified _DEVTGELGV_ 0 0 0 DCHS2|p.A454V|1|0.32|ENSG00000197410|chr4:154489995-154489995|G/A|missense_variant DCHS2|p.A454V|1|0.32|ENSG00000197410|chr4:154489995-154489995|G/A|missense_variant DCHS2|p.A454V|1|0.32|ENSG00000197410|chr4:154489995-154489995|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.22637939453125 2 459.724372 917.434192 0.35671 0.00016399 -0.30638 -0.00014085 0.050334 2.314E-05 459.72423140892664 72.021 0.86629 68.483 68.048 68.914 -3.5385 50 24 3 0 0 0 0.28819 1 13727 13727 32.305 5.4218 1 2953200 6457 790 3878 3882 6800 6800 -0.027828083356666866 DEVTKFQL 8 Unmodified _DEVTKFQL_ 0 0 0 PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant;ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ;PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2577209472656 2 490.258382 978.502212 -0.12892 -6.3204E-05 0.94463 0.00046311 0.81571 0.00039991 490.2588079783634 63.751 0.45085 63.751 63.401 63.852 0 17 12 2 0 0 0 0.62642 1 12212 12212 20.454 1.1966 1 1786600 6458 4236 3879 3883 6801 6801 0.012100613149868877 DEVTTNLK 8 Unmodified _DEVTTNLK_ 0 0 0 REV__tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1 REV__tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23883056640625 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 131.3 1 131.3 130.8 131.8 0 0 0 0 0.21486 1 25959 25959 7.9102 2.6795 1 + 6459 25314 3880 3884 6802 6802 0.0033318441827532297 DEVTVTAL 8 Unmodified _DEVTVTAL_ 0 0 0 nc|ENSG00000137818|P05386-2|RPLP1 nc|ENSG00000137818|P05386-2|RPLP1 nc|ENSG00000137818|P05386-2|RPLP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.23565673828125 2 424.224008 846.433463 0.24979 0.00010597 0.012614 5.3511E-06 0.2624 0.00011132 424.2239179330541 100.44 1.2659 96.142 95.746 97.012 -4.297 88 36 3 0 0 0 0.53444 1 19295 19295 26.341 6.9023 1 21974000 6460 12349 3881 3885 6803 6803 0.004103970152641523 DEVTVTAL 8 Unmodified _DEVTVTAL_ 0 0 0 nc|ENSG00000137818|P05386-2|RPLP1 nc|ENSG00000137818|P05386-2|RPLP1 nc|ENSG00000137818|P05386-2|RPLP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2528381347656 2 424.224008 846.433463 0.02372 1.0063E-05 0.19844 8.4182E-05 0.22216 9.4245E-05 424.22402537758023 100.22 1.2301 96.227 95.763 96.993 -3.9895 89 35 3 0 0 0 0.53444 1 19298 19298 26.341 6.9023 1 23048000 6461 12349 3881 3885 6804 6804 0.004103970152641523 DEVTVTAL 8 Unmodified _DEVTVTAL_ 0 0 0 nc|ENSG00000137818|P05386-2|RPLP1 nc|ENSG00000137818|P05386-2|RPLP1 nc|ENSG00000137818|P05386-2|RPLP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 424.224008 846.433463 0.038886 1.6496E-05 0.14528 6.1631E-05 0.18416 7.8127E-05 424.2239941304715 96.294 1.248 96.294 95.836 97.084 0 0.10376 -4.1978E-05 NaN 26.341 92 35 4 NaN NaN NaN NaN 0 NaN NaN 0 20842000 6462 12349 3881 3885 0.004103970152641523 DEVTVTAL 8 Unmodified _DEVTVTAL_ 0 0 0 nc|ENSG00000137818|P05386-2|RPLP1 nc|ENSG00000137818|P05386-2|RPLP1 nc|ENSG00000137818|P05386-2|RPLP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 424.224008 846.433463 -0.12826 -5.4411E-05 0.4034 0.00017113 0.27514 0.00011672 424.224100902472 100.26 1.3557 96.098 95.519 96.874 -4.1594 -0.092136 0.00017703 NaN 26.341 103 38 4 NaN NaN NaN NaN 0 NaN NaN 0 19865000 6463 12349 3881 3885 0.004103970152641523 DEVVMGDTSL 10 Unmodified _DEVVMGDTSL_ 0 0 0 REV__nc|ENSG00000166323|Q8NCR3-2|MFI REV__nc|ENSG00000166323|Q8NCR3-2|MFI MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.262939453125 2 533.242072 1064.46959 NaN NaN NaN NaN NaN NaN NaN 155.72 1 150.43 149.93 150.93 -5.2854 0 0 0 0.22576 1 30204 30204 14.838 2.3067 1 + 6464 17840 3882 3886 6805 6805 -0.06006513870147501 DEVVYPPP 8 Unmodified _DEVVYPPP_ 0 0 0 ENST00000524933.1_1_11:13716477-13732426:+|nuORF;ENSG00000197601|ENST00000354817|FAR1 ENST00000524933.1_1_11:13716477-13732426:+|nuORF ENST00000524933.1_1_11:13716477-13732426:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22674560546875 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 56.439 1 53.545 53.045 54.045 -2.8944 0 0 0 0.21486 1 10813 10813 11.114 0.93107 1 6465 7384 3883 3887 6806 6806 -0.02209299122102948 DEVYAVKV 8 Unmodified _DEVYAVKV_ 0 0 0 ENSG00000171132|ENST00000306156|PRKCE ENSG00000171132|ENST00000306156|PRKCE ENSG00000171132|ENST00000306156|PRKCE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5359802246094 2 461.74765 921.480748 0.08778 4.0532E-05 0.2274 0.000105 0.31518 0.00014553 461.74776368086077 83.718 0.25778 79.843 79.712 79.97 -3.8751 11 6 2 0 0 0 0.68128 1 15882 15882 16.942 4.4107 1 737360 6466 6125 3884 3888 6807 6807 0.01686676286283273 DEVYEWLVY 9 Unmodified _DEVYEWLVY_ 0 0 0 nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3 nc|ENSG00000137944|Q6YP21-3|KYAT3 nc|ENSG00000137944|Q6YP21-3|KYAT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3003845214844 3 405.857128 1214.54956 -0.071809 -2.9144E-05 -0.18272 -7.416E-05 -0.25453 -0.0001033 405.85701704672283 32.748 0.38652 30.517 30.294 30.68 -2.2305 15 10 2 0 0 0 0.8825 1 5952 5952 2.7352 0.45242 1 627580 6467 4126 3885 3889 6808 6808 -0.0491370420468229 DEVYLWDRVN 10 Unmodified _DEVYLWDRVN_ 0 0 0 REV__tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1 REV__tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2158508300781 3 436.878815 1307.61462 -0.075368 -3.2927E-05 3.9471 0.0017244 3.8717 0.0016915 436.87929044815314 80.03 0.76201 76.225 76.004 76.766 -3.8048 27 21 2 0 0 0 0.74977 1 15261 15261 5.7834 1.6668 1 629630 + 6468 24993 3886 3890 6809 6809 -0.026887096788186682 DEWCQNGQ 8 Unmodified _DEWCQNGQ_ 0 0 0 ENST00000474900.5_1_11:132182607-132182652:+|nuORF ENST00000474900.5_1_11:132182607-132182652:+|nuORF ENST00000474900.5_1_11:132182607-132182652:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2541198730469 2 490.182349 978.350144 -0.042328 -2.0748E-05 1.1687 0.00057286 1.1263 0.00055212 490.1827112861655 103.95 0.85259 99.731 99.343 100.2 -4.2183 57 24 3 0 0 0 1.0066 1 20510 20510 11.64 11.64 1 5654900 6469 10270 3887 3891 6810 6810 -0.13989662704204875 DEWHHYAL 8 Unmodified _DEWHHYAL_ 0 0 0 ENSG00000139182|ENST00000266546|CLSTN3;nc|ENSG00000139182|Q9BQT9-2|CLSTN3 ENSG00000139182|ENST00000266546|CLSTN3 ENSG00000139182|ENST00000266546|CLSTN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5538330078125 3 357.494524 1069.46174 -0.5137 -0.00018364 0.56893 0.00020339 0.055229 1.9744E-05 357.4946808288595 87.919 0.65907 84.169 83.947 84.606 -3.7501 23 18 2 0 0 0 0.83238 1 16824 16824 23.722 20.84 1 1116800 6470 4229 3888 3892 6811 6811 -0.07020860284774244 DEWIAKEA 8 Unmodified _DEWIAKEA_ 0 0 0 nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7;ENST00000513980.5_1_17:47892935-47904861:+|nuORF;ENST00000512616.5_1_17:47892935-47904861:+|nuORF;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7;nc|ENSG00000136504|O95251-2|KAT7 nc|ENSG00000136504|O95251-4|KAT7 nc|ENSG00000136504|O95251-4|KAT7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2352294921875 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 68.793 1 65.614 65.114 66.114 -3.1796 0 0 0 0.19136 1 13367 13367 27.629 11.782 1 6471 4016 3889 3893 6812 6812 -0.02654798236142142 DEWIAKEA 8 Unmodified _DEWIAKEA_ 0 0 0 nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7;ENST00000513980.5_1_17:47892935-47904861:+|nuORF;ENST00000512616.5_1_17:47892935-47904861:+|nuORF;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7;nc|ENSG00000136504|O95251-2|KAT7 nc|ENSG00000136504|O95251-4|KAT7 nc|ENSG00000136504|O95251-4|KAT7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2341613769531 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 69.106 1 65.57 65.07 66.07 -3.5362 0 0 0 0.21019 1 13006 13006 17.113 0.1706 1 6472 4016 3889 3893 6813 6813 -0.02654798236142142 DEWIDEDEDDD 11 Unmodified _DEWIDEDEDDD_ 0 0 0 REV__PPP6R2|p.P854Rfs*23|1|0.41|ENSG00000100239|chr22:50440981-50440981|C/-|frameshift_variant REV__PPP6R2|p.P854Rfs*23|1|0.41|ENSG00000100239|chr22:50440981-50440981|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2568359375 3 465.828403 1394.46338 -0.13278 -6.1851E-05 -0.16045 -7.4741E-05 -0.29322 -0.00013659 466.16259731652116 87.452 1.8646 83.725 83.291 85.156 -3.727 127 51 3 0 0 0 0.96225 1 17165 17165 0.08335 0 1 46353000 + 6473 14679 3890 3894 6814 6814 -0.21807405358663345 DEWIDEDEDDD 11 Unmodified _DEWIDEDEDDD_ 0 0 0 REV__PPP6R2|p.P854Rfs*23|1|0.41|ENSG00000100239|chr22:50440981-50440981|C/-|frameshift_variant REV__PPP6R2|p.P854Rfs*23|1|0.41|ENSG00000100239|chr22:50440981-50440981|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2497863769531 3 465.828403 1394.46338 0.13932 6.4901E-05 -0.41661 -0.00019407 -0.27728 -0.00012917 466.1624513796263 87.162 1.7177 83.433 83.012 84.73 -3.7289 119 48 3 0 0 0 0.96225 1 16870 16870 0.08335 0 1 40768000 + 6474 14679 3890 3894 6815 6815 -0.21807405358663345 DEWKHLDH 8 Unmodified _DEWKHLDH_ 0 0 0 nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2 nc|ENSG00000078699|O43439-2|CBFA2T2 nc|ENSG00000078699|O43439-2|CBFA2T2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.1997985839844 3 360.501679 1078.48321 -0.1874 -6.7559E-05 0.16092 5.8012E-05 -0.026481 -9.5465E-06 360.501716515851 27.556 0.55408 27.556 27.351 27.905 0 34 15 3 0 0 0 0.41395 1 4866 4866 36.127 19.978 1 2139400 6475 1585 3891 3895 6816 6816 -0.052894752560632696 DEWKHLDH 8 Unmodified _DEWKHLDH_ 0 0 0 nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2 nc|ENSG00000078699|O43439-2|CBFA2T2 nc|ENSG00000078699|O43439-2|CBFA2T2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.200439453125 3 360.501679 1078.48321 0.33515 0.00012082 -0.35976 -0.00012969 -0.02461 -8.8718E-06 360.50151752026983 29.614 0.59362 27.498 27.214 27.807 -2.1167 38 16 3 0 0 0 0.61952 1 5331 5331 32.786 18.88 1 2326700 6476 1585 3891 3895 6817 6817 -0.052894752560632696 DEWKHLDH 8 Unmodified _DEWKHLDH_ 0 0 0 nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2 nc|ENSG00000078699|O43439-2|CBFA2T2 nc|ENSG00000078699|O43439-2|CBFA2T2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.202392578125 3 360.501679 1078.48321 0.34515 0.00012443 -0.36221 -0.00013058 -0.017064 -6.1515E-06 360.50148308634454 29.434 0.59335 27.541 27.263 27.856 -1.8928 41 16 3 0 0 0 0.88839 1 5059 5059 22.736 21.407 1 2707000 6477 1585 3891 3895 6818 6818 -0.052894752560632696 DEWKHLDH 8 Unmodified _DEWKHLDH_ 0 0 0 nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2 nc|ENSG00000078699|O43439-2|CBFA2T2 nc|ENSG00000078699|O43439-2|CBFA2T2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2020263671875 3 360.501679 1078.48321 -0.19068 -6.8741E-05 0.21419 7.7217E-05 0.023514 8.4767E-06 360.5016988486738 29.596 0.59028 27.522 27.241 27.831 -2.0743 43 16 3 0 0 0 0.70215 1 5048 5048 22.736 11.242 1 1909900 6478 1585 3891 3895 6819 6819 -0.052894752560632696 DEWQMCFD 8 Unmodified _DEWQMCFD_ 0 0 0 MYO18B|p.R1521C|1|0.72|ENSG00000133454|chr22:25895173-25895173|C/T|missense_variant MYO18B|p.R1521C|1|0.72|ENSG00000133454|chr22:25895173-25895173|C/T|missense_variant MYO18B|p.R1521C|1|0.72|ENSG00000133454|chr22:25895173-25895173|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 358.1463623046875 3 358.461616 1072.36302 -0.46584 -0.00016699 0.49462 0.0001773 0.028781 1.0317E-05 358.46181188710233 75.876 0.51134 72.243 72.1 72.611 -3.6337 19 14 2 0 0 0 1.0265 1 14493 14493 1.6526 0 1 1272300 6479 12187 3892 3896 6820 6820 -0.17026967636320478 DEWQMCFD 8 Unmodified _DEWQMCFD_ 0 0 0 MYO18B|p.R1521C|1|0.72|ENSG00000133454|chr22:25895173-25895173|C/T|missense_variant MYO18B|p.R1521C|1|0.72|ENSG00000133454|chr22:25895173-25895173|C/T|missense_variant MYO18B|p.R1521C|1|0.72|ENSG00000133454|chr22:25895173-25895173|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 358.461616 1072.36302 -0.31833 -0.00011411 0.42314 0.00015168 0.10481 3.757E-05 358.4617828086782 72.189 0.41879 72.189 71.952 72.371 0 -0.084053 0.00021388 NaN 1.6526 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1703600 6480 12187 3892 3896 -0.17026967636320478 DEWQMCFD 8 Unmodified _DEWQMCFD_ 0 0 0 MYO18B|p.R1521C|1|0.72|ENSG00000133454|chr22:25895173-25895173|C/T|missense_variant MYO18B|p.R1521C|1|0.72|ENSG00000133454|chr22:25895173-25895173|C/T|missense_variant MYO18B|p.R1521C|1|0.72|ENSG00000133454|chr22:25895173-25895173|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 358.461616 1072.36302 0.10498 3.763E-05 -0.10385 -3.7227E-05 0.0011269 4.0396E-07 358.46153560997277 76.109 0.48261 72.387 72.101 72.583 -3.7227 0.11413 -0.00035285 NaN 1.6526 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1089200 6481 12187 3892 3896 -0.17026967636320478 DEWQQLDLAQK 11 Unmodified _DEWQQLDLAQK_ 0 0 0 ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484;ZNF484|p.I377Ffs*23|1|0.37|ENSG00000127081|chr9:92847658-92847658|T/-|frameshift_variant ENSG00000127081|ENST00000375495|ZNF484 ENSG00000127081|ENST00000375495|ZNF484 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.2279052734375 4 344.17285 1372.66229 0.27357 9.4154E-05 -2.1296 -0.00073296 -1.8561 -0.00063881 344.4232286850271 100.38 0.92567 96.085 95.646 96.572 -4.297 36 26 2 0 0 0 0.89021 1 19216 19216 0.03141 0.024127 1 5559000 6482 3461 3893 3897 6821 6821 -0.00913055478622482 DEWQQLDLAQK 11 Unmodified _DEWQQLDLAQK_ 0 0 0 ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484;ZNF484|p.I377Ffs*23|1|0.37|ENSG00000127081|chr9:92847658-92847658|T/-|frameshift_variant ENSG00000127081|ENST00000375495|ZNF484 ENSG00000127081|ENST00000375495|ZNF484 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 344.17285 1372.66229 -0.25033 -8.6157E-05 -1.7554 -0.00060415 -2.0057 -0.00069031 344.42339302851997 100.12 1.7438 95.959 95.345 97.089 -4.1594 -0.062986 0.0002519 NaN 0.03141 66 49 2 NaN NaN NaN NaN 0 NaN NaN 0 2406900 6483 3461 3893 3897 -0.00913055478622482 DEWRAFHY 8 Unmodified _DEWRAFHY_ 0 0 0 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20831298828125 3 375.170041 1122.48829 -0.79224 -0.00029722 -0.91364 -0.00034277 -1.7059 -0.00064 375.1695989611369 45.531 0.45609 42.664 42.362 42.818 -2.8666 16 12 2 0 0 0 0.85653 1 8275 8275 1.8442 0.19162 1 590390 + 6484 13711 3894 3898 6822 6822 -0.06805171393443743 DEWSLNSI 8 Unmodified _DEWSLNSI_ 0 0 0 REV__nc|ENSG00000162723|Q96A28-2|SLAMF9 REV__nc|ENSG00000162723|Q96A28-2|SLAMF9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7780456542969 2 482.224539 962.434526 0.050913 2.4551E-05 1.1089 0.00053475 1.1598 0.00055931 482.22505525601645 60.058 0.88237 56.835 56.429 57.312 -3.2237 31 24 2 0 0 0 0.95515 1 11289 11289 21.747 5.8995 1 1066700 + 6485 17524 3895 3899 6823 6823 -0.048193886158060195 DEWSLNSI 8 Unmodified _DEWSLNSI_ 0 0 0 REV__nc|ENSG00000162723|Q96A28-2|SLAMF9 REV__nc|ENSG00000162723|Q96A28-2|SLAMF9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 482.224539 962.434526 0.018158 8.7563E-06 0.44925 0.00021664 0.46741 0.0002254 482.2247682661698 59.7 0.59768 56.767 56.537 57.135 -2.9333 -0.033694 -0.00024053 NaN 15.847 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1279800 + 6486 17524 3895 3899 -0.048193886158060195 DEWTVETV 8 Unmodified _DEWTVETV_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2529296875 2 489.724372 977.434192 0.21087 0.00010327 0.060139 2.9452E-05 0.27101 0.00013272 489.7243189677304 110.97 1.0793 110.97 110.54 111.62 0 90 30 4 0 0 0 0.58903 1 21812 21812 38.151 0 1 18061000 6487 3922 3896 3900 6824 6824 -0.05542808335655991 DEWTVETV 8 Unmodified _DEWTVETV_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2567138671875 2 489.724372 977.434192 0.1639 8.0267E-05 0.0099851 4.89E-06 0.17389 8.5157E-05 489.72428185978634 115.78 1.5217 111.29 110.73 112.25 -4.486 131 43 4 0 0 0 0.11963 1 22804 22804 81.864 0 1 32177000 6488 3922 3896 3900 6825 6825 -0.05542808335655991 DEWTVETV 8 Unmodified _DEWTVETV_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2723388671875 2 489.724372 977.434192 0.373 0.00018267 -0.20782 -0.00010177 0.16518 8.0892E-05 489.7241922584115 115.92 1.4593 111.34 110.87 112.33 -4.5815 122 41 4 0 0 0 0.079144 1 22260 22260 89.427 18.711 1 21471000 6489 3922 3896 3900 6826 6826 -0.05542808335655991 DEWTVETV 8 Unmodified _DEWTVETV_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2569580078125 2 489.724372 977.434192 0.26131 0.00012797 -0.021606 -1.0581E-05 0.23971 0.00011739 489.7243152775063 115.66 1.4167 111.3 110.78 112.2 -4.3585 116 39 4 0 0 0 0.30817 1 22225 22225 60.39 15.983 1 19357000 6490 3922 3896 3900 6827 6827 -0.05542808335655991 DEYAIGYF 8 Unmodified _DEYAIGYF_ 0 0 0 nc|ENSG00000108773|Q92830-2|KAT2A;ENSG00000108773|ENST00000225916|KAT2A;ENST00000468111.1_1_3:20168975-20187957:+|nuORF;ENSG00000114166|ENST00000263754|KAT2B nc|ENSG00000108773|Q92830-2|KAT2A nc|ENSG00000108773|Q92830-2|KAT2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 489.5837707519531 2 489.216183 976.417813 0.13541 6.6246E-05 0.30735 0.00015036 0.44277 0.00021661 489.21637513072386 153.85 0.55533 148.62 148.31 148.87 -5.2209 24 15 3 0 0 0 0.53444 1 29786 29786 26.341 11.76 1 1348700 6491 2493 3897 3901 6828 6828 -0.0713388950175613 DEYAIGYF 8 Unmodified _DEYAIGYF_ 0 0 0 nc|ENSG00000108773|Q92830-2|KAT2A;ENSG00000108773|ENST00000225916|KAT2A;ENST00000468111.1_1_3:20168975-20187957:+|nuORF;ENSG00000114166|ENST00000263754|KAT2B nc|ENSG00000108773|Q92830-2|KAT2A nc|ENSG00000108773|Q92830-2|KAT2A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.216183 976.417813 0.25479 0.00012465 -0.1975 -9.662E-05 0.057289 2.8027E-05 489.2159176987707 153.65 0.70934 148.88 148.48 149.19 -4.7684 0.12843 -0.00014913 NaN 26.341 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1729400 6492 2493 3897 3901 -0.0713388950175613 DEYDDEEDSYY 11 Unmodified _DEYDDEEDSYY_ 0 0 0 tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1 tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1 tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77423095703125 3 481.496653 1441.46813 NaN NaN NaN NaN NaN NaN NaN 123.13 1 118.4 117.9 118.9 -4.731 0 0 0 0.23698 1 23652 23652 1.3296 0.87513 1 6493 26346 3898 3902 6829 6829 -0.2349452121586637 DEYDDEEDSYY 11 Unmodified _DEYDDEEDSYY_ 0 0 0 tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1 tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1 tr|U7T272|U7T272_FUSNUHemolysinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00572PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.787109375 3 481.496653 1441.46813 NaN NaN NaN NaN NaN NaN NaN 119.99 1 115.52 115.02 116.02 -4.467 0 0 0 0.23698 1 23099 23099 1.3296 0.55311 1 6494 26346 3898 3902 6830 6830 -0.2349452121586637 DEYDFYRSF 9 Unmodified _DEYDFYRSF_ 0 0 0 nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;EXOSC10|p.I202Nfs*17|1|0.1|ENSG00000171824|chr1:11091052-11091053|-/T|frameshift_variant;EXOSC10|p.N179Ifs*84|1|0.05|ENSG00000171824|chr1:11091121-11091121|T/-|frameshift_variant nc|ENSG00000171824|Q01780-2|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7635498046875 2 621.259111 1240.50367 1.0278 0.00063853 -0.6301 -0.00039145 0.3977 0.00024708 621.2586834746863 142.58 0.85835 137.92 137.51 138.37 -4.656 73 24 4 0 0 0 0.10537 4 28143 28126;28136;28143;28223 51.415 50.2 1 41236000 6495 6178 3899 3903 6831;6832;6833;6834 6833 -0.10696349386921611 DEYDFYRSF 9 Unmodified _DEYDFYRSF_ 0 0 0 nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;EXOSC10|p.I202Nfs*17|1|0.1|ENSG00000171824|chr1:11091052-11091053|-/T|frameshift_variant;EXOSC10|p.N179Ifs*84|1|0.05|ENSG00000171824|chr1:11091121-11091121|T/-|frameshift_variant nc|ENSG00000171824|Q01780-2|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7643432617188 2 621.259111 1240.50367 0.33598 0.00020873 0.2155 0.00013388 0.55148 0.00034261 621.2591664597923 142.79 0.87117 137.76 137.3 138.18 -5.0261 82 24 4 0 0 0 0.09885 3 27504 27500;27504;27556 56.177 46.026 1 29542000 6496 6178 3899 3903 6835;6836;6837 6836 -0.10696349386921611 DEYDFYRSF 9 Unmodified _DEYDFYRSF_ 0 0 0 nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;EXOSC10|p.I202Nfs*17|1|0.1|ENSG00000171824|chr1:11091052-11091053|-/T|frameshift_variant;EXOSC10|p.N179Ifs*84|1|0.05|ENSG00000171824|chr1:11091121-11091121|T/-|frameshift_variant nc|ENSG00000171824|Q01780-2|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.78076171875 2 621.259111 1240.50367 0.47522 0.00029523 0.098829 6.1398E-05 0.57405 0.00035663 621.2591181539007 142.51 0.99345 137.62 137.17 138.16 -4.8982 80 27 4 0 0 0 0.41266 2 27467 27453;27467 24.991 21.394 1 34640000 6497 6178 3899 3903 6838;6839 6839 -0.10696349386921611 DEYDGHSTY 9 Unmodified _DEYDGHSTY_ 0 0 0 ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7901611328125 2 543.704168 1085.39378 0.39112 0.00021265 -0.17945 -9.7567E-05 0.21167 0.00011509 543.7039774169257 27.136 0.71762 27.136 26.773 27.49 0 50 20 3 0 0 0 0.00011526 2 4750 4750;4776 125.62 89.58 1 4092500 6498 1774 3900 3904 6840;6841 6840 -0.14549774726060605 DEYDGHSTY 9 Unmodified _DEYDGHSTY_ 0 0 0 ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7904052734375 2 543.704168 1085.39378 0.87861 0.00047771 -0.56644 -0.00030797 0.31218 0.00016973 543.7037623420913 29.152 0.81073 27.196 26.878 27.689 -1.9561 59 22 3 0 0 0 0.027812 1 5245 5245 92.822 64.335 1 4029200 6499 1774 3900 3904 6842 6842 -0.14549774726060605 DEYDGHSTY 9 Unmodified _DEYDGHSTY_ 0 0 0 ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.775634765625 2 543.704168 1085.39378 0.33847 0.00018403 -0.055815 -3.0347E-05 0.28266 0.00015368 543.7040891625027 29.154 0.77434 27.261 26.843 27.617 -1.8928 55 21 3 0 0 0 0.45972 1 5013 5013 10.899 9.6841 1 3692700 6500 1774 3900 3904 6843 6843 -0.14549774726060605 DEYDGHSTY 9 Unmodified _DEYDGHSTY_ 0 0 0 ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7733154296875 2 543.704168 1085.39378 0.52797 0.00028706 -0.32762 -0.00017813 0.20034 0.00010893 543.7039693461503 29.194 0.83594 27.197 26.9 27.736 -1.9962 58 23 3 0 0 0 0.027812 1 4937 4937 92.822 64.335 1 3052600 6501 1774 3900 3904 6844 6844 -0.14549774726060605 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.70068359375 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 63.578 1 63.578 63.078 64.078 0 0 0 0 0.21486 1 12226 12226 11.64 3.047 1 6502 2864 3901 3905 6845 6845 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6792602539062 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 63.717 1 63.717 63.217 64.217 0 0 0 0 0.21039 1 12255 12255 16.942 8.349 1 6503 2864 3901 3905 6846 6846 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6954345703125 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 63.766 1 63.766 63.266 64.266 0 0 0 0 0.11871 1 12268 12268 39.111 24.706 1 6504 2864 3901 3905 6847 6847 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6954345703125 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 63.785 1 63.785 63.285 64.285 0 0 0 0 0.20294 1 12271 12271 23.148 1.6114 1 6505 2864 3901 3905 6848 6848 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7019653320312 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 63.842 1 63.842 63.342 64.342 0 0 0 0 0.20462 1 12283 12283 21.747 8.7042 1 6506 2864 3901 3905 6849 6849 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7011108398438 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 64.07 1 64.07 63.57 64.57 0 0 0 0 0.21486 1 12330 12330 12.532 6.3258 1 6507 2864 3901 3905 6850 6850 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7008056640625 2 523.701094 1045.38764 -0.21219 -0.00011113 -1.0583 -0.00055424 -1.2705 -0.00066536 523.7003637675122 67.154 0.87082 64.045 63.618 64.489 -3.1086 33 24 2 0 0 0 0.68128 3 12963 12963;13013;13101 16.942 9.0321 1 1576200 6508 2864 3901 3905 6851;6852;6853 6851 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.701416015625 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 67.331 1 63.835 63.335 64.335 -3.4965 0 0 0 0.21486 1 12630 12630 12.532 4.6214 1 6509 2864 3901 3905 6854 6854 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.69921875 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 67.8 1 64.303 63.803 64.803 -3.4965 0 0 0 0.21039 1 12727 12727 16.942 3.8998 1 6510 2864 3901 3905 6855 6855 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.701171875 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 67.019 1 63.692 63.192 64.192 -3.3268 0 0 0 0.21486 1 12629 12629 9.3474 1.4373 1 6511 2864 3901 3905 6856 6856 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7007446289062 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 67.301 1 63.974 63.474 64.474 -3.3268 0 0 0 0.21039 1 12686 12686 16.942 0.79319 1 6512 2864 3901 3905 6857 6857 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6996459960938 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 67.532 1 64.206 63.706 64.706 -3.3268 0 0 0 0.21039 1 12734 12734 16.942 3.8998 1 6513 2864 3901 3905 6858 6858 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.701904296875 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 67.794 1 64.467 63.967 64.967 -3.3268 0 0 0 0.21039 1 12787 12787 16.942 8.1969 1 6514 2864 3901 3905 6859 6859 -0.13324292957599937 DEYENETF 8 Unmodified _DEYENETF_ 0 0 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7010498046875 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 68.019 1 64.692 64.192 65.192 -3.3268 0 0 0 0.21486 1 12834 12834 11.64 0.81637 1 6515 2864 3901 3905 6860 6860 -0.13324292957599937 DEYEYDQY 8 Unmodified _DEYEYDQY_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000007350 REV__CON__ENSEMBL:ENSBTAP00000007350 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2124938964844 3 375.473343 1123.3982 NaN NaN NaN NaN NaN NaN NaN 60.45 1 60.45 59.95 60.95 0 0 0 0 0.23487 1 11588 11588 1.7423 1.1154 1 + + 6516 13504 3902 3906 6861 6861 -0.1585631030316108 DEYGAKDY 8 Unmodified _DEYGAKDY_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENST00000462306.5_1_2:128047812-128051699:-|nuORF;ENST00000490062.1_1_2:128050061-128051699:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2456359863281 2 480.700897 959.387241 0.036361 1.7479E-05 0.57467 0.00027624 0.61103 0.00029372 480.70103942226825 27.7 0.58633 27.7 27.419 28.006 0 38 16 3 0 0 0 0.53679 1 4899 4899 36.506 21.668 1 1411500 6517 5407 3903 3907 6862 6862 -0.09407667886796389 DEYGAKDY 8 Unmodified _DEYGAKDY_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENST00000462306.5_1_2:128047812-128051699:-|nuORF;ENST00000490062.1_1_2:128050061-128051699:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23687744140625 2 480.700897 959.387241 0.60262 0.00028968 -0.20089 -9.6566E-05 0.40174 0.00019312 480.70075672277756 29.811 0.80069 27.694 27.247 28.048 -2.1167 37 22 2 0 0 0 0.53679 1 5339 5339 43.772 43.708 1 955190 6518 5407 3903 3907 6863 6863 -0.09407667886796389 DEYGAKDY 8 Unmodified _DEYGAKDY_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENST00000462306.5_1_2:128047812-128051699:-|nuORF;ENST00000490062.1_1_2:128050061-128051699:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2458190917969 2 480.700897 959.387241 0.36961 0.00017767 0.09417 4.5268E-05 0.46378 0.00022294 480.7008755503547 29.615 0.87543 27.723 27.332 28.207 -1.8928 37 24 2 0 0 0 0.96386 1 5008 5008 14.838 3.198 1 1373700 6519 5407 3903 3907 6864 6864 -0.09407667886796389 DEYGAKDY 8 Unmodified _DEYGAKDY_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENST00000462306.5_1_2:128047812-128051699:-|nuORF;ENST00000490062.1_1_2:128050061-128051699:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.245849609375 2 480.700897 959.387241 0.469 0.00022545 -0.023946 -1.1511E-05 0.44505 0.00021394 480.7008283208758 29.824 0.8009 27.749 27.345 28.146 -2.0743 37 22 2 0 0 0 0.94768 1 5044 5044 18.146 6.5061 1 953540 6520 5407 3903 3907 6865 6865 -0.09407667886796389 DEYHGEYQDDY 11 Unmodified _DEYHGEYQDDY_ 0 0 0 nc|ENSG00000117519|Q15417-3|CNN3;ENSG00000117519|ENST00000370206|CNN3;nc|ENSG00000117519|Q15417-2|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7323303222656 3 478.509116 1432.50552 NaN NaN NaN NaN NaN NaN NaN 71.179 1 67.93 67.43 68.43 -3.2492 0 0 0 0.23698 1 13856 13856 1.3296 0 1 6521 2990 3904 3908 6866 6866 -0.19343385159595528 DEYHMVHL 8 Unmodified _DEYHMVHL_ 0 0 0 ENSG00000122557|ENST00000311350|HERPUD2 ENSG00000122557|ENST00000311350|HERPUD2 ENSG00000122557|ENST00000311350|HERPUD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2623901367188 2 522.234384 1042.45422 NaN NaN NaN NaN NaN NaN NaN 86.149 1 82.199 81.699 82.699 -3.9503 0 0 0 0.21486 1 16394 16394 9.3474 0.75416 1 6522 3231 3905 3909 6867 6867 -0.06531335876684352 DEYHVIRY 8 Unmodified _DEYHVIRY_ 0 0 0 GCDH|p.H403Y|1|0.56|ENSG00000105607|chr19:12897827-12897827|C/T|missense_variant GCDH|p.H403Y|1|0.56|ENSG00000105607|chr19:12897827-12897827|C/T|missense_variant GCDH|p.H403Y|1|0.56|ENSG00000105607|chr19:12897827-12897827|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7667236328125 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 102.37 1 98.046 97.546 98.546 -4.3208 0 0 0 0.21486 1 19599 19599 9.3474 0.75416 1 6523 11842 3906 3910 6868 6868 -0.023760180791896346 DEYIAIAK 8 Unmodified _DEYIAIAK_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1;RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant;RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant;RCOR1|p.N307Ifs*32|1|0.37|ENSG00000089902|chr14:102714480-102714480|A/-|frameshift_variant;RCOR1|p.E299Kfs*40|1|0.42|ENSG00000089902|chr14:102714453-102714453|A/-|frameshift_variant;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53179931640625 2 461.74765 921.480748 -0.13814 -6.3785E-05 0.44592 0.0002059 0.30779 0.00014212 461.7477915362283 67.363 0.88519 67.363 66.904 67.79 0 72 24 4 0 0 0 0.089098 2 13031 12976;13031 65.235 19.214 1 23867000 6524 1772 3907 3911 6869;6870 6870 0.01686676286283273 DEYIAIAK 8 Unmodified _DEYIAIAK_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1;RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant;RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant;RCOR1|p.N307Ifs*32|1|0.37|ENSG00000089902|chr14:102714480-102714480|A/-|frameshift_variant;RCOR1|p.E299Kfs*40|1|0.42|ENSG00000089902|chr14:102714453-102714453|A/-|frameshift_variant;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5381164550781 2 461.74765 921.480748 NaN NaN NaN NaN NaN NaN NaN 67.902 1 67.902 67.402 68.402 0 0 0 0 0.20618 1 13127 13127 20.454 7.9221 1 6525 1772 3907 3911 6871 6871 0.01686676286283273 DEYIAIAK 8 Unmodified _DEYIAIAK_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1;RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant;RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant;RCOR1|p.N307Ifs*32|1|0.37|ENSG00000089902|chr14:102714480-102714480|A/-|frameshift_variant;RCOR1|p.E299Kfs*40|1|0.42|ENSG00000089902|chr14:102714453-102714453|A/-|frameshift_variant;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5411071777344 2 461.74765 921.480748 -0.19068 -8.8045E-05 0.45121 0.00020834 0.26053 0.0001203 461.7477958670642 70.591 1.0612 67.342 66.825 67.886 -3.2492 85 29 4 0 0 0 0.66247 1 13651 13651 18.146 6.5061 1 39433000 6526 1772 3907 3911 6872 6872 0.01686676286283273 DEYIAIAK 8 Unmodified _DEYIAIAK_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1;RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant;RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant;RCOR1|p.N307Ifs*32|1|0.37|ENSG00000089902|chr14:102714480-102714480|A/-|frameshift_variant;RCOR1|p.E299Kfs*40|1|0.42|ENSG00000089902|chr14:102714453-102714453|A/-|frameshift_variant;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5299377441406 2 461.74765 921.480748 0.30397 0.00014036 -0.0054854 -2.5329E-06 0.29848 0.00013782 461.747580156652 70.999 1.0192 67.419 66.911 67.93 -3.5798 84 28 4 0 0 0 0.089098 1 13424 13424 65.235 27.261 1 33600000 6527 1772 3907 3911 6873 6873 0.01686676286283273 DEYIAIAK 8 Unmodified _DEYIAIAK_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1;RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant;RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant;RCOR1|p.N307Ifs*32|1|0.37|ENSG00000089902|chr14:102714480-102714480|A/-|frameshift_variant;RCOR1|p.E299Kfs*40|1|0.42|ENSG00000089902|chr14:102714453-102714453|A/-|frameshift_variant;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.74765 921.480748 0.34901 0.00016115 -0.055995 -2.5856E-05 0.29301 0.0001353 461.74755078646956 70.864 0.98593 67.396 66.919 67.905 -3.467 0.016461 -0.00027346 NaN 65.235 82 27 4 NaN NaN NaN NaN 0 NaN NaN 0 36754000 6528 1772 3907 3911 0.01686676286283273 DEYIERLVWR 10 Unmodified _DEYIERLVWR_ 0 0 0 ENST00000555749.5_1_14:57710864-57735366:-|nuORF;ENST00000554598.5_1_14:57706266-57735366:-|nuORF;EXOC5|p.L483Ffs*15|1|0.17|ENSG00000070367|chr14:57219399-57219400|-/A|frameshift_variant;ENSG00000070367|ENST00000621441|EXOC5 ENST00000555749.5_1_14:57710864-57735366:-|nuORF ENST00000555749.5_1_14:57710864-57735366:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2419128417969 3 460.241976 1377.7041 NaN NaN NaN NaN NaN NaN NaN 142.43 1 137.41 136.91 137.91 -5.0261 0 0 0 2.8426 1 27454 27454 0.043787 0 1 6529 1430 3908 3912 6874 6874 0.030355450005572493 DEYIERLVWR 10 Unmodified _DEYIERLVWR_ 0 0 0 ENST00000555749.5_1_14:57710864-57735366:-|nuORF;ENST00000554598.5_1_14:57706266-57735366:-|nuORF;EXOC5|p.L483Ffs*15|1|0.17|ENSG00000070367|chr14:57219399-57219400|-/A|frameshift_variant;ENSG00000070367|ENST00000621441|EXOC5 ENST00000555749.5_1_14:57710864-57735366:-|nuORF ENST00000555749.5_1_14:57710864-57735366:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2418212890625 3 460.241976 1377.7041 NaN NaN NaN NaN NaN NaN NaN 143.51 1 138.61 138.11 139.11 -4.8982 0 0 0 2.8426 1 27700 27700 0.043787 0 1 6530 1430 3908 3912 6875 6875 0.030355450005572493 DEYIQSHNF 9 Unmodified _DEYIQSHNF_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.33349609375 2 576.751453 1151.48835 0.063294 3.6505E-05 2.771 0.0015982 2.8343 0.0016347 576.7516058146804 69.878 0.68265 69.878 69.524 70.207 0 44 18 3 0 0 0 0.64397 1 13497 13497 31.268 15.119 1 7862600 6531 7178 3909 3913 6876 6876 -0.0813321618406917 DEYIQSHNF 9 Unmodified _DEYIQSHNF_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3358154296875 2 576.751453 1151.48835 -0.066268 -3.822E-05 3.0134 0.001738 2.9471 0.0016997 576.7514939892266 73.444 0.75192 70.133 69.671 70.423 -3.3107 59 20 4 0 0 0 0.0029765 1 14313 14313 122.18 86.052 1 9779200 6532 7178 3909 3913 6877 6877 -0.0813321618406917 DEYIQSHNF 9 Unmodified _DEYIQSHNF_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.327392578125 2 576.751453 1151.48835 0.33169 0.00019131 -0.24151 -0.00013929 0.090182 5.2012E-05 576.7512748520506 73.712 0.55621 70.036 69.79 70.347 -3.6764 29 15 2 0 0 0 0.086396 1 13901 13901 60.074 46.168 1 5760300 6533 7178 3909 3913 6878 6878 -0.0813321618406917 DEYIQSHNF 9 Unmodified _DEYIQSHNF_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3338012695312 2 576.751453 1151.48835 0.38282 0.00022079 3.3297 0.0019204 3.7126 0.0021412 576.7512452667708 73.646 0.70531 70.052 69.657 70.362 -3.594 64 19 5 0 0 0 0.089388 1 13980 13980 66.457 50.609 1 8315900 6534 7178 3909 3913 6879 6879 -0.0813321618406917 DEYKEHFYN 9 Unmodified _DEYKEHFYN_ 0 0 0 ENSG00000257594|ENST00000529983|GALNT4;nc|ENSG00000257594|Q8N4A0-2|GALNT4;ENST00000547474.1_3_12:89916592-89919989:-|nuORF ENSG00000257594|ENST00000529983|GALNT4 ENSG00000257594|ENST00000529983|GALNT4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7640991210938 2 622.76456 1243.51457 NaN NaN NaN NaN NaN NaN NaN 142.87 1 137.97 137.47 138.47 -4.8982 0 0 0 0.19679 1 27573 27573 0.37959 0 1 6535 7946 3910 3914 6880 6880 -0.09744947012609373 DEYKVNKEGY 10 Unmodified _DEYKVNKEGY_ 0 0 0 nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7801513671875 2 622.793318 1243.57208 0.42275 0.00026328 -0.30663 -0.00019097 0.11612 7.2317E-05 622.7930112185783 31.038 0.24916 31.038 30.859 31.108 0 13 6 3 0 0 0 0.22719 1 5601 5601 64.692 49.443 1 1180200 6536 7687 3911 3915 6881 6881 -0.03996104807015399 DEYKVNKEGY 10 Unmodified _DEYKVNKEGY_ 0 0 0 nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7660522460938 2 622.793318 1243.57208 0.46115 0.0002872 -0.24731 -0.00015402 0.21383 0.00013317 622.7930717516737 33.399 0.31385 31.252 31.113 31.427 -2.1468 15 8 2 0 0 0 0.07619 1 5833 5833 70.496 40.655 1 853790 6537 7687 3911 3915 6882 6882 -0.03996104807015399 DEYKVNKEGY 10 Unmodified _DEYKVNKEGY_ 0 0 0 nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7811279296875 2 622.793318 1243.57208 0.60524 0.00037694 -0.37083 -0.00023095 0.2344 0.00014599 622.7929985936332 33.426 0.37926 31.211 31.044 31.423 -2.2158 17 10 2 0 0 0 0.58541 1 5811 5811 41.347 25.198 1 891940 6538 7687 3911 3915 6883 6883 -0.03996104807015399 DEYKVNKEGY 10 Unmodified _DEYKVNKEGY_ 0 0 0 nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 622.793318 1243.57208 0.94847 0.0005907 -1.235 -0.00076916 -0.28654 -0.00017846 622.7927471939729 33.588 0.34692 31.271 31.079 31.426 -2.3175 0.077837 -0.00093017 NaN 70.496 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 978380 6539 7687 3911 3915 -0.03996104807015399 DEYLLRAKD 9 Unmodified _DEYLLRAKD_ 0 0 0 sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1;sp|F5HGT1|MCP_HCMVMMajorcapsidproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=MCPPE=3SV=1 sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1 sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2117004394531 3 374.864506 1121.57169 -0.19305 -7.2367E-05 0.36823 0.00013804 0.17518 6.5669E-05 374.86451208180415 61.683 0.31696 58.721 58.547 58.864 -2.9614 12 8 2 0 0 0 0.58077 1 11909 11909 14.405 0 1 920510 6540 25740 3912 3916 6884 6884 0.015765202637794573 DEYLLRAKD 9 Unmodified _DEYLLRAKD_ 0 0 0 sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1;sp|F5HGT1|MCP_HCMVMMajorcapsidproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=MCPPE=3SV=1 sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1 sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.22198486328125 3 374.864506 1121.57169 -0.48124 -0.0001804 0.74021 0.00027748 0.25897 9.7077E-05 374.86465839165044 61.911 0.40981 58.672 58.484 58.893 -3.2395 18 11 2 0 0 0 0.6427 1 11639 11639 10.151 0 1 1054100 6541 25740 3912 3916 6885 6885 0.015765202637794573 DEYRRHWWRCN 11 Unmodified _DEYRRHWWRCN_ 0 0 0 SPRTN|p.F417Lfs*11|1|0.36|ENSG00000010072|chr1:231353138-231353138|T/-|frameshift_variant;ENSG00000010072|ENST00000295050|SPRTN;nc|ENSG00000010072|Q9H040-3|SPRTN;SPRTN|p.G222Afs*7|4|0.25|ENSG00000010072|chr1:231351510-231351510|A/-|frameshift_variant;nc|ENSG00000010072|Q9H040-2|SPRTN SPRTN|p.F417Lfs*11|1|0.36|ENSG00000010072|chr1:231353138-231353138|T/-|frameshift_variant SPRTN|p.F417Lfs*11|1|0.36|ENSG00000010072|chr1:231353138-231353138|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2674560546875 3 540.912747 1619.71641 NaN NaN NaN NaN NaN NaN NaN 166.59 1 161.61 161.11 162.11 -4.9811 0 0 0 0.23698 1 32671 32671 0.32927 0.23443 1 6542 1059 3913 3917 6886 6886 -0.06865741808019266 DEYRVLLYREQ 11 Unmodified _DEYRVLLYREQ_ 0 0 0 REV__ENSG00000140835|ENST00000539698|CHST4 REV__ENSG00000140835|ENST00000539698|CHST4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3809204101562 2 742.380623 1482.74669 NaN NaN NaN NaN NaN NaN NaN 163.23 1 158.44 157.94 158.94 -4.7898 0 0 0 0.23476 1 32526 32526 4.5289 1.5336 1 + 6543 16600 3914 3918 6887 6887 0.024628953381352403 DEYSVKGLAT 10 Unmodified _DEYSVKGLAT_ 0 0 0 REV__nc|ENSG00000164542|Q8NCT3-2|MATCAP2 REV__nc|ENSG00000164542|Q8NCT3-2|MATCAP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77685546875 2 541.771854 1081.52915 0.084539 4.5801E-05 -0.10135 -5.491E-05 -0.016813 -9.1088E-06 541.7717103086392 55.809 0.62141 52.633 52.281 52.903 -3.1761 58 17 5 0 0 0 0.71097 1 10369 10369 10.074 0.6908 1 46587000 + 6544 24140 3915 3919 6888 6888 -0.008348748644721127 DFAPGSFDDQY 11 Unmodified _DFAPGSFDDQY_ 0 0 0 ART4|p.H193Lfs*24|1|0.06|ENSG00000111339|chr12:14840720-14840721|-/TATAAATA|frameshift_variant;ENSG00000111339|ENST00000228936|ART4 ART4|p.H193Lfs*24|1|0.06|ENSG00000111339|chr12:14840720-14840721|-/TATAAATA|frameshift_variant ART4|p.H193Lfs*24|1|0.06|ENSG00000111339|chr12:14840720-14840721|-/TATAAATA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7677001953125 2 631.254025 1260.4935 0.4684 0.00029568 0.52613 0.00033212 0.99454 0.00062781 631.2542288449263 109.96 0.75278 109.96 109.65 110.4 0 32 21 2 0 0 0 0.74417 1 21618 21618 8.7454 1.4562 1 2562100 6545 225 3916 3920 6889 6889 -0.1263295711214596 DFDCPDHSDE 10 Unmodified _DFDCPDHSDE_ 0 0 0 LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.I3028Nfs*2|1|0.39|ENSG00000168702|chr2:140492645-140492646|-/T|frameshift_variant;LRP1B|p.N3100Kfs*6|1|0.21|ENSG00000168702|chr2:140485468-140485469|-/T|frameshift_variant;LRP1B|p.Y3120*|1|0.16|ENSG00000168702|chr2:140485402-140485408|AGTAGGG/-|frameshift_variant;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant;LRP1B|p.G2867A|1|0.06|ENSG00000168702|chr2:140503025-140503025|C/G|missense_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.25048828125 2 590.198393 1178.38223 NaN NaN NaN NaN NaN NaN NaN 152.12 1 146.95 146.45 147.45 -5.1759 0 0 0 0.22588 1 29480 29480 1.6526 0 1 6546 5927 3917 3921 6890 6890 -0.19982339811735983 DFDENQDFCK 10 Unmodified _DFDENQDFCK_ 0 0 0 REV__nc|ENSG00000182983|Q6ZS27-2|ZNF662 REV__nc|ENSG00000182983|Q6ZS27-2|ZNF662 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7595825195312 2 630.74551 1259.47647 NaN NaN NaN NaN NaN NaN NaN 155.76 1 150.98 150.48 151.48 -4.7791 0 0 0 0.22588 1 30964 30964 3.9444 0.3479 1 + 6547 18813 3918 3922 6891 6891 -0.14289200989605888 DFEISPVL 8 Unmodified _DFEISPVL_ 0 0 0 REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2413024902344 2 460.242201 918.469849 NaN NaN NaN NaN NaN NaN NaN 142.25 1 137.35 136.85 137.85 -4.8982 0 0 0 0.23025 1 27446 27446 3.5871 1.8448 1 + 6548 25147 3919 3923 6892 6892 0.0073527391199377234 DFERLHRN 8 Unmodified _DFERLHRN_ 0 0 0 nc|ENSG00000124104|Q969T3-2|SNX21;ENSG00000124104|ENST00000491381|SNX21 nc|ENSG00000124104|Q969T3-2|SNX21 nc|ENSG00000124104|Q969T3-2|SNX21 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7765502929688 2 543.775597 1085.53664 NaN NaN NaN NaN NaN NaN NaN 11.993 1 10.864 10.364 11.364 -1.1293 0 0 0 0.21486 1 1450 1450 2.5775 0.27475 1 6549 3290 3920 3924 6893 6893 -0.002706777535195215 DFFAHPDL 8 Unmodified _DFFAHPDL_ 0 0 0 nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;ENST00000533825.1_1_1:52237763-52247292:+|nuORF nc|ENSG00000117859|Q96SU4-5|OSBPL9 nc|ENSG00000117859|Q96SU4-5|OSBPL9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2326354980469 2 481.224342 960.434132 NaN NaN NaN NaN NaN NaN NaN 150.69 1 145.49 144.99 145.99 -5.1994 0 0 0 0.21486 1 29201 29201 9.3474 2.6243 1 6550 3005 3921 3925 6894 6894 -0.0476676354500114 DFFFLAAV 8 Unmodified _DFFFLAAV_ 0 0 0 REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1 REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24188232421875 2 465.242004 928.469455 NaN NaN NaN NaN NaN NaN NaN 69.904 1 66.325 65.825 66.825 -3.5798 0 0 0 0.12938 1 13168 13168 40.449 2.2974 1 + 6551 24701 3922 3926 6895 6895 0.0023589898280533816 DFFFLAAV 8 Unmodified _DFFFLAAV_ 0 0 0 REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1 REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24200439453125 2 465.242004 928.469455 NaN NaN NaN NaN NaN NaN NaN 69.801 1 66.411 65.911 66.911 -3.3903 0 0 0 0.17894 1 13207 13207 32.117 1.8922 1 + 6552 24701 3922 3926 6896 6896 0.0023589898280533816 DFGPPGHRGPY 11 Unmodified _DFGPPGHRGPY_ 0 0 0 REV__ENSG00000081052|ENST00000396625|COL4A4 REV__ENSG00000081052|ENST00000396625|COL4A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2999877929688 2 600.283254 1198.55196 0.12593 7.5595E-05 -0.97785 -0.00058699 -0.85192 -0.00051139 600.2826528110643 93.47 1.1702 89.626 89.192 90.362 -3.844 106 33 5 0 0 0 0.61937 1 17933 17933 17.113 1.8644 1 114000000 + 6553 14424 3923 3927 6897 6897 -0.03937810956313115 DFGSERIR 8 Unmodified _DFGSERIR_ 0 0 0 ENSG00000183960|ENST00000328405|KCNH8 ENSG00000183960|ENST00000328405|KCNH8 ENSG00000183960|ENST00000328405|KCNH8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25347900390625 2 490.251423 978.488293 NaN NaN NaN NaN NaN NaN NaN 26.28 1 24.646 24.146 25.146 -1.6347 0 0 0 0.21452 1 4352 4352 13.508 2.684 1 6554 6882 3924 3928 6898 6898 -0.001811713934330328 DFHLRKLNR 9 Unmodified _DFHLRKLNR_ 0 0 0 REV__ENST00000547496.5_1_12:89853476-89885774:-|nuORF REV__ENST00000547496.5_1_12:89853476-89885774:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.2324523925781 3 400.231634 1197.67307 NaN NaN NaN NaN NaN NaN NaN 176.14 1 171.35 170.85 171.85 -4.7898 0 0 0 0.23508 1 36015 36015 0.26902 0 1 + 6555 16514 3925 3929 6899 6899 0.0821443647698743 DFHQYDTGFD 10 Unmodified _DFHQYDTGFD_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant;RYR2|p.K1745Nfs*25|1|0.49|ENSG00000198626|chr1:237614358-237614358|A/-|frameshift_variant;RYR2|p.L2146Gfs*3|1|0.05|ENSG00000198626|chr1:237628075-237628076|-/GGTCT|frameshift_variant;RYR2|p.A2213Lfs*22|1|0.28|ENSG00000198626|chr1:237633654-237633654|A/-|frameshift_variant ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7653198242188 2 622.746367 1243.47818 NaN NaN NaN NaN NaN NaN NaN 10.418 1 9.3246 8.8246 9.8246 -1.0936 0 0 0 0.22588 1 1183 1183 0.40072 0 1 6556 7465 3926 3930 6900 6900 -0.1338182390932161 DFIIFLRDL 9 Unmodified _DFIIFLRDL_ 0 0 0 ENST00000356056.9_1_15:72116561-72116612:-|nuORF ENST00000356056.9_1_15:72116561-72116612:-|nuORF ENST00000356056.9_1_15:72116561-72116612:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.328369140625 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 90.342 1 86.564 86.064 87.064 -3.7779 0 0 0 0.19649 1 17289 17289 0.87518 0 1 6557 8966 3927 3931 6901 6901 0.06935175545527272 DFIKFYLW 8 Unmodified _DFIKFYLW_ 0 0 0 REV__TBCCD1|p.E77K|1|0.2|ENSG00000113838|chr3:186564101-186564101|C/T|missense_variant REV__TBCCD1|p.E77K|1|0.2|ENSG00000113838|chr3:186564101-186564101|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.2239685058594 3 377.867299 1130.58007 0.51679 0.00019528 1.8682 0.00070591 2.3849 0.00090119 377.8679233960595 23.088 0.53081 21.535 21.338 21.868 -1.5532 13 8 2 0 0 0 0.89926 1 4011 4011 1.7423 0.28716 1 393020 + 6558 24773 3928 3932 6902 6902 0.020001189710455947 DFIKFYLW 8 Unmodified _DFIKFYLW_ 0 0 0 REV__TBCCD1|p.E77K|1|0.2|ENSG00000113838|chr3:186564101-186564101|C/T|missense_variant REV__TBCCD1|p.E77K|1|0.2|ENSG00000113838|chr3:186564101-186564101|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 377.867299 1130.58007 -0.154 -5.819E-05 1.6563 0.00062587 1.5023 0.00056768 377.8680546307169 21.564 0.61317 21.564 21.124 21.737 0 0.050391 -0.00059166 NaN 1.7423 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 623550 + 6559 24773 3928 3932 0.020001189710455947 DFIKFYLW 8 Unmodified _DFIKFYLW_ 0 0 0 REV__TBCCD1|p.E77K|1|0.2|ENSG00000113838|chr3:186564101-186564101|C/T|missense_variant REV__TBCCD1|p.E77K|1|0.2|ENSG00000113838|chr3:186564101-186564101|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 377.867299 1130.58007 -1.1362 -0.00042934 3.1681 0.0011971 2.0319 0.00076778 377.86836634467653 23.23 0.51513 21.441 21.258 21.773 -1.7886 -0.072222 0.0011221 NaN 1.7423 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 552590 + 6560 24773 3928 3932 0.020001189710455947 DFIQRELAA 9 Unmodified _DFIQRELAA_ 0 0 0 REV__ENST00000533581.1_1_1:31658018-31661124:-|nuORF REV__ENST00000533581.1_1_1:31658018-31661124:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2684936523438 2 531.782556 1061.55056 0.36801 0.0001957 -0.16786 -8.9264E-05 0.20016 0.00010644 531.7824612152793 122.03 1.3945 117.5 117.08 118.47 -4.5305 123 38 5 0 0 0 0.44932 1 23535 23535 22.736 2.3217 1 117570000 + 6561 14467 3929 3933 6903 6903 0.022245549548870258 DFLDRCFQ 8 Unmodified _DFLDRCFQ_ 0 0 0 ENSG00000124374|ENST00000244221|PAIP2B ENSG00000124374|ENST00000244221|PAIP2B ENSG00000124374|ENST00000244221|PAIP2B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.270751953125 2 522.234384 1042.45422 NaN NaN NaN NaN NaN NaN NaN 133.51 1 128.87 128.37 129.37 -4.6399 0 0 0 0.21039 1 26322 26322 16.942 3.4344 1 6562 3312 3930 3934 6904 6904 -0.0653133587670709 DFLSRNRR 8 Unmodified _DFLSRNRR_ 0 0 0 ENST00000455976.6_1_15:48633742-48634229:+|nuORF ENST00000455976.6_1_15:48633742-48634229:+|nuORF ENST00000455976.6_1_15:48633742-48634229:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2732543945312 2 532.291414 1062.56827 0.49968 0.00026598 1.5172 0.00080761 2.0169 0.0010736 532.2923409142331 101.09 0.66875 101.09 100.73 101.4 0 49 18 3 0 0 0 8448 1 19791 19791 1.7423 0 1 6068200 6563 10023 3931 3935 6905 6905 0.03949315000409115 DFLTRLSQ 8 Unmodified _DFLTRLSQ_ 0 0 0 REV__ENSG00000186193|ENST00000409687|SAPCD2 REV__ENSG00000186193|ENST00000409687|SAPCD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2634582519531 2 490.263999 978.513445 0.069424 3.4036E-05 -0.24418 -0.00011971 -0.17475 -8.5675E-05 490.2638454845085 85.278 0.56047 81.614 81.331 81.892 -3.6641 39 15 3 0 0 0 0.66247 1 16725 16725 18.146 1.0335 1 3571200 + 6564 19020 3932 3936 6906 6906 0.023328834091330464 DFMLHLRYSVL 11 Unmodified _DFMLHLRYSVL_ 0 0 0 REV__ENSG00000135749|ENST00000258229|PCNX2 REV__ENSG00000135749|ENST00000258229|PCNX2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24688720703125 3 465.248074 1392.72239 NaN NaN NaN NaN NaN NaN NaN 152.18 1 146.94 146.44 147.44 -5.2365 0 0 0 0.22632 1 29502 29502 1.4551 1.4289 1 + 6565 16287 3933 3937 6907 6907 0.04173963650919177 DFNRMRNL 8 Unmodified _DFNRMRNL_ 0 0 0 REV__ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant REV__ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2680053710938 2 533.26655 1064.51855 NaN NaN NaN NaN NaN NaN NaN 164.52 1 164.52 164.02 165.02 0 0 0 0 0.23811 1 33276 33276 0.12286 0.049601 1 + 6566 12909 3934 3938 6908 6908 -0.011131359998898915 DFPDLPDPQ 9 Unmodified _DFPDLPDPQ_ 0 0 0 ENSG00000096717|ENST00000212015|SIRT1;SIRT1|p.G415Wfs*2|2|0.27|ENSG00000096717|chr10:67909321-67909322|-/T|frameshift_variant;nc|ENSG00000096717|Q96EB6-2|SIRT1 ENSG00000096717|ENST00000212015|SIRT1 ENSG00000096717|ENST00000212015|SIRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6886596679688 2 522.237647 1042.46074 -0.3976 -0.00020764 0.34543 0.0001804 -0.052174 -2.7247E-05 522.2377660421672 104.29 1.2013 100.07 99.587 100.79 -4.2183 111 34 5 0 0 0 0.60061 1 20480 20480 13.042 1.4022 1 91333000 6567 1878 3935 3939 6909 6909 -0.05879119444330172 DFQFLKWSNKE 11 Unmodified _DFQFLKWSNKE_ 0 0 0 REV__ENSG00000102287|ENST00000370328|GABRE REV__ENSG00000102287|ENST00000370328|GABRE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2414855957031 3 481.241865 1440.70376 0.22682 0.00010916 -0.22184 -0.00010676 0.0049872 2.4E-06 481.24186507049046 74.16 1.149 70.483 69.614 70.763 -3.6764 45 32 2 0 0 0 0.66087 1 13944 13944 1.4551 0 1 1690200 + 6568 14832 3936 3940 6910 6910 0.0010412528067718085 DFQFLKWSNKE 11 Unmodified _DFQFLKWSNKE_ 0 0 0 REV__ENSG00000102287|ENST00000370328|GABRE REV__ENSG00000102287|ENST00000370328|GABRE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24151611328125 3 481.241865 1440.70376 0.30889 0.00014865 -0.45844 -0.00022062 -0.14954 -7.1967E-05 481.2417715126485 74.138 1.0229 70.544 69.758 70.781 -3.594 73 28 3 0 0 0 0.65515 1 13982 13982 3.0723 0 1 3378500 + 6569 14832 3936 3940 6911 6911 0.0010412528067718085 DFRIPRVY 8 Unmodified _DFRIPRVY_ 0 0 0 tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1 tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1 tr|U7STV3|U7STV3_FUSNUGlutamatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00995PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2745361328125 2 533.295633 1064.57671 NaN NaN NaN NaN NaN NaN NaN 145 1 140.33 139.83 140.83 -4.6694 0 0 0 0.2343 1 28731 28731 1.7423 1.669 1 6570 26170 3937 3941 6912 6912 0.04700868917052503 DFRKALDTE 9 Unmodified _DFRKALDTE_ 0 0 0 REV__ENSG00000155660|ENST00000652332|PDIA4 REV__ENSG00000155660|ENST00000652332|PDIA4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7772827148438 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 174.93 1 170.14 169.64 170.64 -4.7898 0 0 0 0.23508 1 35750 35750 6.2058 1.4498 1 + 6571 17222 3938 3942 6913 6913 -0.002640527703533735 DFRNNRFP 8 Unmodified _DFRNNRFP_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2662353515625 2 533.264865 1064.51518 NaN NaN NaN NaN NaN NaN NaN 150.26 1 145.14 144.64 145.64 -5.1204 0 0 0 0.23584 1 29118 29118 0.68139 0 1 6572 1275 3939 3943 6914 6914 -0.0145006278225992 DFSDEVKIE 9 Unmodified _DFSDEVKIE_ 0 0 0 nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2783203125 2 541.256037 1080.49752 0.28363 0.00015351 -0.19031 -0.00010301 0.093312 5.0506E-05 541.2557769601935 116.18 0.73013 111.7 111.34 112.07 -4.486 51 20 3 0 0 0 0.69259 1 22836 22836 6.7232 0.51738 1 5802300 6573 3962 3940 3944 6915 6915 -0.039508676184368596 DFSLLNVQDQ 10 Unmodified _DFSLLNVQDQ_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;FRAS1|p.V2385Sfs*37|1|0.28|ENSG00000138759|chr4:78466329-78466329|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4-5|FRAS1 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2738647460938 2 589.788035 1177.56152 0.34797 0.00020523 0.077088 4.5466E-05 0.42506 0.00025069 590.2879976780184 141.07 0.099243 141.07 140.99 141.09 0 4 2 2 0 0 0 0.84281 1 28084 28084 5.7319 0.43497 1 1553800 6574 4208 3941 3945 6916 6916 -0.02016087461470306 DFSNRKPFINR 11 Unmodified _DFSNRKPFINR_ 0 0 0 nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5 nc|ENSG00000119231|Q96HI0-2|SENP5 nc|ENSG00000119231|Q96HI0-2|SENP5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2475891113281 3 465.249354 1392.72623 NaN NaN NaN NaN NaN NaN NaN 156.74 1 151.96 151.46 152.46 -4.7885 0 0 0 0.22632 1 31170 31170 0.172 0.14059 1 6575 3063 3942 3946 6917 6917 0.045577694689882264 DFVLRRTPF 9 Unmodified _DFVLRRTPF_ 0 0 0 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3240356445312 2 575.822015 1149.62948 0.2923 0.00016831 -3.3944 -0.0019546 -3.1021 -0.0017862 576.3224587223272 130.15 0.13278 130.15 130.06 130.19 0 5 3 2 0 0 0 0.45972 1 25727 25727 8.1555 7.8901 1 901630 + 6576 16771 3943 3947 6918 6918 0.06064826979832105 DFVLRRTPF 9 Unmodified _DFVLRRTPF_ 0 0 0 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.822015 1149.62948 0.2923 0.00016831 -3.3944 -0.0019546 -3.1021 -0.0017862 576.3224587223272 130.15 0.13278 130.15 130.06 130.19 0 0.12479 -0.00073978 NaN 8.1555 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 901630 + 6577 16771 3943 3947 0.06064826979832105 DFVLRRTPF 9 Unmodified _DFVLRRTPF_ 0 0 0 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.822015 1149.62948 0.22222 0.00012796 -1.7857 -0.0010283 -1.5635 -0.0009003 575.8191216608938 134.72 0.10957 129.9 129.83 129.94 -4.8175 -0.12479 0.0011128 NaN 8.1555 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 746180 + 6578 16771 3943 3947 0.06064826979832105 DFVQLPCLF 9 Unmodified _DFVQLPCLF_ 0 0 0 REV__ENST00000494909.5_1_2:114398284-114398608:+|nuORF REV__ENST00000494909.5_1_2:114398284-114398608:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2754516601562 2 541.272978 1080.5314 NaN NaN NaN NaN NaN NaN NaN 121 1 116.47 115.97 116.97 -4.5305 0 0 0 0.18039 1 23300 23300 6.4869 2.0099 1 + 6579 22372 3944 3948 6919 6919 -0.0056411766038309 DFYYLVKSFT 10 Unmodified _DFYYLVKSFT_ 0 0 0 SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 428.1341247558594 3 428.216657 1281.62814 0.15932 6.8221E-05 -0.93559 -0.00040064 -0.77628 -0.00033242 428.21637340594503 33.483 1.9807 31.267 30.004 31.984 -2.2158 164 56 4 0 0 0 0.75844 1 5736 5736 3.0723 0.78949 1 6166400 6580 25691 3945 3949 6920 6920 -0.0014085189959587296 DFYYLVKSFT 10 Unmodified _DFYYLVKSFT_ 0 0 0 SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 428.216657 1281.62814 0.13958 5.9771E-05 -0.88888 -0.00038063 -0.7493 -0.00032086 428.2163637764759 31.23 1.7484 31.23 30.164 31.913 0 -0.11518 -2.5393E-05 NaN 3.0723 145 49 4 NaN NaN NaN NaN 0 NaN NaN 0 10008000 6581 25691 3945 3949 -0.0014085189959587296 DFYYLVKSFT 10 Unmodified _DFYYLVKSFT_ 0 0 0 SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 428.216657 1281.62814 -0.16986 -7.2737E-05 -0.67541 -0.00028922 -0.84527 -0.00036196 428.2164560788199 33.735 1.7357 31.418 30.279 32.015 -2.3175 0.072718 0.00024885 NaN 3.0723 164 49 4 NaN NaN NaN NaN 0 NaN NaN 0 7065800 6582 25691 3945 3949 -0.0014085189959587296 DFYYLVKSFT 10 Unmodified _DFYYLVKSFT_ 0 0 0 SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 428.216657 1281.62814 0.19196 8.2202E-05 -0.99597 -0.00042649 -0.804 -0.00034429 428.21632534074274 33.612 1.8459 31.465 30.203 32.048 -2.1468 0.11992 -0.00016296 NaN 3.0723 157 52 4 NaN NaN NaN NaN 0 NaN NaN 0 7668200 6583 25691 3945 3949 -0.0014085189959587296 DFYYLVKSFT 10 Unmodified _DFYYLVKSFT_ 0 0 0 SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant SLC6A8|p.G155D|1|0.24|ENSG00000130821|chrX:153691373-153691373|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 428.216657 1281.62814 0.15932 6.8221E-05 -0.93559 -0.00040064 -0.77628 -0.00033242 428.21637340594503 33.483 1.9807 31.267 30.004 31.984 -2.2158 -0.077452 -8.5403E-05 NaN 3.0723 164 56 4 NaN NaN NaN NaN 0 NaN NaN 0 6166400 6584 25691 3945 3949 -0.0014085189959587296 DFYYMDYLM 9 Unmodified _DFYYMDYLM_ 0 0 0 ENSG00000124302|ENST00000650847|CHST8 ENSG00000124302|ENST00000650847|CHST8 ENSG00000124302|ENST00000650847|CHST8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7516479492188 2 630.751218 1259.48788 NaN NaN NaN NaN NaN NaN NaN 166.08 1 161.29 160.79 161.79 -4.7898 0 0 0 0.23508 1 33317 33317 4.756 1.1595 1 6585 3309 3946 3950 6921 6921 -0.13148095219821698 DGAGSLPWPG 10 Unmodified _DGAGSLPWPG_ 0 0 0 ENSG00000152382|ENST00000367874|TADA1 ENSG00000152382|ENST00000367874|TADA1 ENSG00000152382|ENST00000367874|TADA1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7266845703125 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 76.702 1 73.287 72.787 73.787 -3.4151 0 0 0 0.22583 1 14970 14970 13.906 1.3745 1 6586 4919 3947 3951 6922 6922 -0.039556650333452126 DGCDDDSDCH 10 Unmodified _DGCDDDSDCH_ 0 0 0 REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;REV__LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.1253051757812 2 541.145303 1080.27605 NaN NaN NaN NaN NaN NaN NaN 170.75 1 170.75 170.25 171.25 0 0 0 0 2.8426 1 35129 35129 0 0 1 + 6587 18047;23811 3948 3952 6923 6923 -0.26087418648717176 DGCDDDSDCH 10 Unmodified _DGCDDDSDCH_ 0 0 0 REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;REV__LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2639770507812 2 541.145303 1080.27605 NaN NaN NaN NaN NaN NaN NaN 155.28 1 150.5 150 151 -4.7791 0 0 0 2.8426 1 30868 30868 0 0 1 + 6588 18047;23811 3948 3952 6924 6924 -0.26087418648717176 DGEQLENNY 9 Unmodified _DGEQLENNY_ 0 0 0 ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB ENST00000505896.5_1_5:49695109-49707239:-|nuORF ENST00000505896.5_1_5:49695109-49707239:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.265625 2 541.225268 1080.43598 NaN NaN NaN NaN NaN NaN NaN 133.27 1 128.64 128.14 129.14 -4.6399 0 0 0 0.19636 1 26276 26276 2.4985 2.4252 1 6589 6081 3949 3953 6925 6925 -0.10101799317703808 DGFRVLCL 8 Unmodified _DGFRVLCL_ 0 0 0 REV__ENST00000583908.1_1_17:80442656-80446105:+|nuORF REV__ENST00000583908.1_1_17:80442656-80446105:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5341491699219 2 461.744388 921.474223 0.017765 8.2028E-06 1.1071 0.00051118 1.1248 0.00051938 461.7448488628116 136.86 1.1609 131.94 131.6 132.76 -4.9216 83 32 3 0 0 0 0.7908 1 26431 26431 6.1918 4.4496 1 37079000 + 6590 23219 3950 3954 6926 6926 0.010344598539063554 DGFYEGEL 8 Unmodified _DGFYEGEL_ 0 0 0 ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C;RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant;nc|ENSG00000060709|O15034-2|RIMBP2;RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant;nc|ENSG00000060709|O15034|RIMBP2;ENSG00000060709|ENST00000690449|RIMBP2 ENSG00000275793|ENST00000619918|RIMBP3;nc|ENSG00000060709|O15034-2|RIMBP2 ENSG00000275793|ENST00000619918|RIMBP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2471008300781 2 465.19799 928.381428 NaN NaN NaN NaN NaN NaN NaN 124.45 1 119.88 119.38 120.38 -4.5757 0 0 0 0.22834 1 24540 24540 0.62683 0.50396 1 6591 6836;1312 3951 3955 6927 6927 -0.08562766398472377 DGGCCCGGGGG 11 Unmodified _DGGCCCGGGGG_ 0 0 0 REV__ENST00000431489.5_1_2:62932928-62934072:+|nuORF REV__ENST00000431489.5_1_2:62932928-62934072:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.4002685546875 1 842.222584 841.215307 0.68736 0.00057891 1.6825 0.001417 2.3698 0.0019959 842.2249110497517 173.36 0.10396 168.48 168.41 168.51 -4.881 4 2 2 0 0 0 0.66313 2 34446 34446;34448 0 0 1 6959800 + 6592 21620 3952 3956 6928;6929 6928 -0.21165182441950492 DGGDDRER 8 Unmodified _DGGDDRER_ 0 0 0 REV__ENST00000591120.1_1_19:5621399-5622763:-|nuORF REV__ENST00000591120.1_1_19:5621399-5622763:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2333068847656 2 460.196845 918.379136 NaN NaN NaN NaN NaN NaN NaN 175.35 1 170.46 169.96 170.96 -4.8916 0 0 0 0.21486 1 34950 34950 2.3027 0.24298 1 + 6593 23328 3953 3957 6930 6930 -0.08331802083557704 DGGKKAGG 8 Unmodified _DGGKKAGG_ 0 0 0 REV__ENSG00000164778|ENST00000297375|EN2 REV__ENSG00000164778|ENST00000297375|EN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.2144470214844 2 345.182478 688.350402 NaN NaN NaN NaN NaN NaN NaN 25.29 1 25.29 24.79 25.79 0 0 0 0 0.23487 1 4381 4381 0.12286 0.11459 1 + 6594 17708 3954 3958 6931 6931 -0.0062387492204152295 DGGNFDEEY 9 Unmodified _DGGNFDEEY_ 0 0 0 REV__nc|ENSG00000154864|Q9H5I5-4|PIEZO2 REV__nc|ENSG00000154864|Q9H5I5-4|PIEZO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6917724609375 2 523.190894 1044.36723 0.47716 0.00024965 -2.3479 -0.0012284 -1.8707 -0.00097874 523.1896043670721 104.93 1.2964 104.93 104.41 105.71 0 129 36 5 0 0 0 0.52396 2 20647 20647;20734 18.146 5.1039 1 16677000 + 6595 17201 3955 3959 6932;6933 6932 -0.15317463617407157 DGHQLLSAQPS 11 Unmodified _DGHQLLSAQPS_ 0 0 0 REV__ENST00000508743.1_1_17:46952351-46969644:-|nuORF REV__ENST00000508743.1_1_17:46952351-46969644:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3258666992188 2 576.785827 1151.5571 -0.22053 -0.0001272 0.51569 0.00029745 0.29516 0.00017025 576.7862265770725 35.068 0.45782 32.674 32.422 32.88 -2.3938 16 12 2 0 0 0 0.95396 1 6466 6466 6.6304 0 1 747020 + 6596 22517 3956 3960 6934 6934 -0.012615518843631435 DGHYLSEEP 9 Unmodified _DGHYLSEEP_ 0 0 0 nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000480227.5_1_16:2149506-2153780:-|nuORF nc|ENSG00000008710|P98161-2|PKD1 nc|ENSG00000008710|P98161-2|PKD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6871948242188 2 523.724904 1045.43525 NaN NaN NaN NaN NaN NaN NaN 40.351 1 40.351 39.851 40.851 0 0 0 0 0.22251 1 7505 7505 16.942 3.0362 1 6597 1047 3957 3961 6935 6935 -0.08564593966752909 DGILCVADR 9 Unmodified _DGILCVADR_ 0 0 0 nc|ENSG00000164616|Q9UKT6|FBXL21P nc|ENSG00000164616|Q9UKT6|FBXL21P nc|ENSG00000164616|Q9UKT6|FBXL21P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2413635253906 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 47.463 1 47.463 46.963 47.963 0 0 0 0 0.14817 1 8950 8950 4.477 2.7347 1 6598 12426 3958 3962 6936 6936 -0.011950493596486922 DGLITCLHR 9 Unmodified _DGLITCLHR_ 0 0 0 REV__ENSG00000161714|ENST00000619929|PLCD3 REV__ENSG00000161714|ENST00000619929|PLCD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.0202331542969 3 343.183293 1026.52805 -2.2942 -0.00078733 -1.3183 -0.00045243 -3.6125 -0.0012398 343.18284708345266 14.736 0.50393 13.526 13.348 13.852 -1.2106 32 14 3 0 0 0 0.88413 1 2014 2014 0.23584 0 1 462610 + 6599 17467 3959 3963 6937 6937 0.015846322856077677 DGNKKKAYY 9 Unmodified _DGNKKKAYY_ 0 0 0 REV__ENST00000485596.5_1_15:85634092-85681131:+|nuORF REV__ENST00000485596.5_1_15:85634092-85681131:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.783447265625 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 52.463 1 49.375 48.875 49.875 -3.0876 0 0 0 0.19679 1 9649 9649 0.40827 0 1 + 6600 14301 3960 3964 6938 6938 0.01120554954900399 DGPEPCTSYP 10 Unmodified _DGPEPCTSYP_ 0 0 0 REV__ENSG00000188051|ENST00000341130|TMEM221 REV__ENSG00000188051|ENST00000341130|TMEM221 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2708740234375 2 533.213314 1064.41208 NaN NaN NaN NaN NaN NaN NaN 96.011 1 96.011 95.511 96.511 0 0 0 0 0.22544 1 18808 18808 19.257 0 1 + 6601 19129 3961 3965 6939 6939 -0.11755356075764212 DGPHPPPP 8 Unmodified _DGPHPPPP_ 0 0 0 ENSG00000147234|ENST00000683843|FRMPD3;FRMPD3|p.S1014Afs*18|1|0.32|ENSG00000147234|chrX:107600973-107600973|C/-|frameshift_variant ENSG00000147234|ENST00000683843|FRMPD3 ENSG00000147234|ENST00000683843|FRMPD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 407.1998596191406 2 407.198128 812.381703 NaN NaN NaN NaN NaN NaN NaN 41.173 1 41.173 40.673 41.673 0 0 0 0 0.22834 1 7677 7677 1.7423 1.6194 1 6602 4692 3962 3966 6940 6940 -0.031993018879575175 DGPLSLVMP 9 Unmodified _DGPLSLVMP_ 0 0 0 nc|ENSG00000165891|Q96AV8-2|E2F7;E2F7|p.P729Lfs*53|1|0.24|ENSG00000165891|chr12:77025937-77025937|G/-|frameshift_variant;nc|ENSG00000165891|Q96AV8-3|E2F7;ENSG00000165891|ENST00000322886|E2F7 nc|ENSG00000165891|Q96AV8-2|E2F7 nc|ENSG00000165891|Q96AV8-2|E2F7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1708984375 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 116.68 1 112.1 111.6 112.6 -4.5815 0 0 0 0.23508 1 22390 22390 1.1933 0 1 6603 906 3963 3967 6941 6941 0.00691620414204408 DGPSSAAY 8 Unmodified _DGPSSAAY_ 0 0 0 REV__nc|ENSG00000122512|P54278-3|PMS2 REV__nc|ENSG00000122512|P54278-3|PMS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 384.16455078125 2 384.163951 766.313348 NaN NaN NaN NaN NaN NaN NaN 79.889 1 76.379 75.879 76.879 -3.5102 0 0 0 0.23366 1 15602 15602 0.62683 0.50396 1 + 6604 15694 3964 3968 6942 6942 -0.07915591258472432 DGPVKRKK 8 Unmodified _DGPVKRKK_ 0 0 0 REV__ENST00000265052.9_1_3:127410783-127410831:-|nuORF REV__ENST00000265052.9_1_3:127410783-127410831:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1654052734375 3 309.86266 926.566149 NaN NaN NaN NaN NaN NaN NaN 42.84 1 40.121 39.621 40.621 -2.7191 0 0 0 0.21486 1 8020 8020 3.5965 0 1 + 6605 20237 3965 3969 6943 6943 0.0999288626261432 DGRRACLE 8 Unmodified _DGRRACLE_ 0 0 0 REV__ENST00000328649.10_1_15:90775541-90777175:-|nuORF REV__ENST00000328649.10_1_15:90775541-90777175:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 307.1543884277344 3 307.151993 918.434149 NaN NaN NaN NaN NaN NaN NaN 113.01 1 108.74 108.24 109.24 -4.2725 0 0 0 0.21486 1 21763 21763 1.6526 0 1 + 6606 20598 3966 3970 6944 6944 -0.028330868166449363 DGSCGVAY 8 Unmodified _DGSCGVAY_ 0 0 0 FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.R2288H|1|0.41|ENSG00000196924|chrX:154351928-154351928|C/T|missense_variant;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 386.15234375 2 386.152529 770.290504 NaN NaN NaN NaN NaN NaN NaN 179.47 1 179.47 178.97 179.97 0 0 0 0 0.21486 1 37178 37178 0.69038 0 1 6607 7316 3967 3971 6945 6945 -0.10382933647599657 DGSKWKKHR 9 Unmodified _DGSKWKKHR_ 0 0 0 nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;nc|ENSG00000290456|Q8N1L4|CYP4Z2P;ENSG00000186160|ENST00000334194|CYP4Z1 nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21026611328125 3 381.212351 1140.61522 NaN NaN NaN NaN NaN NaN NaN 24.955 1 24.955 24.455 25.455 0 0 0 0 0.23508 1 4311 4311 4.5289 0.94181 1 6608 7038 3968 3972 6946 6946 0.05054174551560209 DGSPGYFHY 9 Unmodified _DGSPGYFHY_ 0 0 0 REV__ENST00000528488.5_1_11:47073946-47158905:+|nuORF REV__ENST00000528488.5_1_11:47073946-47158905:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2589721679688 2 521.716882 1041.41921 -0.022178 -1.1571E-05 2.233 0.001165 2.2108 0.0011534 522.2194124680045 49.764 0.37563 46.758 46.599 46.975 -3.0068 15 10 2 0 0 0 0.86532 1 9137 9137 4.756 0.81161 1 1425400 + 6609 22726 3969 3973 6947 6947 -0.0998425541299639 DGSPGYFHY 9 Unmodified _DGSPGYFHY_ 0 0 0 REV__ENST00000528488.5_1_11:47073946-47158905:+|nuORF REV__ENST00000528488.5_1_11:47073946-47158905:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.716882 1041.41921 -0.69577 -0.00036299 2.1055 0.0010985 1.4098 0.00073549 521.71845457606 49.974 0.41973 46.975 46.618 47.038 -2.999 0.10847 -8.7902E-05 NaN 8.5933 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 743320 + 6610 22726 3969 3973 -0.0998425541299639 DGSRASPVQ 9 Unmodified _DGSRASPVQ_ 0 0 0 MED16|p.S235R|1|0.56|ENSG00000175221|chr19:885944-885944|G/C|missense_variant MED16|p.S235R|1|0.56|ENSG00000175221|chr19:885944-885944|G/C|missense_variant MED16|p.S235R|1|0.56|ENSG00000175221|chr19:885944-885944|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.1903381347656 3 306.154279 915.441008 NaN NaN NaN NaN NaN NaN NaN 79.052 1 75.376 74.876 75.876 -3.676 0 0 0 0.23508 1 15058 15058 0.96228 0 1 6611 12123 3970 3974 6948 6948 -0.020094506644227295 DGSTVERR 8 Unmodified _DGSTVERR_ 0 0 0 REV__NDUFAF5|p.V33D|1|0.23|ENSG00000101247|chr20:13785166-13785166|T/A|missense_variant REV__NDUFAF5|p.V33D|1|0.23|ENSG00000101247|chr20:13785166-13785166|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2332763671875 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 91.992 1 88.183 87.683 88.683 -3.8083 0 0 0 0.20294 1 17620 17620 23.148 3.7094 1 + 6612 24345 3971 3975 6949 6949 -0.010580482901445976 DGTIHLYIY 9 Unmodified _DGTIHLYIY_ 0 0 0 KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.K873Nfs*8|4|0.41|ENSG00000005483|chr7:105106538-105106538|A/-|frameshift_variant;KMT2E|p.T553Nfs*4|1|0.43|ENSG00000005483|chr7:105091243-105091244|-/A|frameshift_variant;KMT2E|p.T553Lfs*7|1|0.44|ENSG00000005483|chr7:105091244-105091244|A/-|frameshift_variant;KMT2E|p.R802Kfs*8|1|0.35|ENSG00000005483|chr7:105105640-105105641|-/A|frameshift_variant;nc|ENSG00000005483|Q8IZD2-4|KMT2E;nc|ENSG00000005483|Q8IZD2-3|KMT2E KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-3|KMT2E KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7933959960938 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 130.77 1 125.93 125.43 126.43 -4.8355 0 0 0 0.23508 1 25107 25107 12.532 0.89125 1 6613 993;12204 3972 3976 6950 6950 0.0013803672338781325 DGTLVWVK 8 Unmodified _DGTLVWVK_ 0 0 0 REV__ENST00000490303.5_1_3:182583321-182631816:+|nuORF REV__ENST00000490303.5_1_3:182583321-182631816:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23974609375 2 459.258185 916.501818 -0.27403 -0.00012585 0.11914 5.4718E-05 -0.15489 -7.1133E-05 459.25826115671947 52.083 0.76125 49.2 48.831 49.592 -2.8824 37 21 2 0 0 0 0.73936 1 9862 9862 8.5933 0 1 2688600 + 6614 14128 3973 3977 6951 6951 0.04022686385803809 DGVALRGS 8 Unmodified _DGVALRGS_ 0 0 0 ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;ENSG00000196628|ENST00000354452|TCF4 ENST00000562680.5_1_18:52899738-53018213:-|nuORF ENST00000562680.5_1_18:52899738-53018213:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7084045410156 2 387.70886 773.403166 0.67455 0.00026153 -1.3843 -0.0005367 -0.70973 -0.00027517 387.7083497446999 23.855 0.69827 22.301 22.012 22.71 -1.5532 39 19 3 0 0 0 0.67861 1 4159 4159 17.113 0 1 3029500 6615 7293 3974 3978 6952 6952 0.007400831407608166 DGVKVTEVD 9 Unmodified _DGVKVTEVD_ 0 0 0 REV__tr|U7STT9|U7STT9_FUSNUDUF4367domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01183PE=4SV=1 REV__tr|U7STT9|U7STT9_FUSNUDUF4367domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01183PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2419128417969 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 78.097 1 74.438 73.938 74.938 -3.6588 0 0 0 0.19711 1 14876 14876 1.2148 0.588 1 + 6616 25122 3975 3979 6953 6953 -0.005428329272717747 DGVLTGRG 8 Unmodified _DGVLTGRG_ 0 0 0 REV__ENSG00000003509|ENST00000002125|NDUFAF7 REV__ENSG00000003509|ENST00000002125|NDUFAF7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7087097167969 2 387.70886 773.403166 -0.085706 -3.3229E-05 -0.24628 -9.5483E-05 -0.33198 -0.00012871 387.7088181704423 22.566 0.80586 22.566 22.121 22.927 0 42 22 3 0 0 0 0.51112 2 3798 3798;3845 27.629 4.4187 1 3386100 + 6617 13830 3976 3980 6954;6955 6954 0.007400831407721853 DGVLTGRG 8 Unmodified _DGVLTGRG_ 0 0 0 REV__ENSG00000003509|ENST00000002125|NDUFAF7 REV__ENSG00000003509|ENST00000002125|NDUFAF7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7091369628906 2 387.70886 773.403166 0.90787 0.00035199 -0.69535 -0.00026959 0.21252 8.2397E-05 387.70852817670254 26.214 0.88741 24.432 24.039 24.926 -1.7821 58 25 3 0 0 0 0.70928 1 4710 4710 13.042 2.9685 1 4653000 + 6618 13830 3976 3980 6956 6956 0.007400831407721853 DGVLTGRG 8 Unmodified _DGVLTGRG_ 0 0 0 REV__ENSG00000003509|ENST00000002125|NDUFAF7 REV__ENSG00000003509|ENST00000002125|NDUFAF7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7082214355469 2 387.70886 773.403166 0.11946 4.6318E-05 -0.026389 -1.0231E-05 0.093076 3.6086E-05 387.70877536590655 26.13 0.45482 24.495 24.23 24.685 -1.6347 18 12 2 0 0 0 0.59076 2 4300 4300;4347 22.736 3.4793 1 388470 + 6619 13830 3976 3980 6957;6958 6957 0.007400831407721853 DGVLTGRG 8 Unmodified _DGVLTGRG_ 0 0 0 REV__ENSG00000003509|ENST00000002125|NDUFAF7 REV__ENSG00000003509|ENST00000002125|NDUFAF7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7087707519531 2 387.70886 773.403166 NaN NaN NaN NaN NaN NaN NaN 26.187 1 24.265 23.765 24.765 -1.9222 0 0 0 0.21486 1 4327 4327 9.3831 0 1 + 6620 13830 3976 3980 6959 6959 0.007400831407721853 DGVSGLAR 8 Unmodified _DGVSGLAR_ 0 0 0 sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2;sp|F5HG51|PRIM_HCMVMDNAprimaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL70PE=3SV=1 sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2 sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7088317871094 2 387.70886 773.403166 -0.05003 -1.9397E-05 -0.35278 -0.00013678 -0.40281 -0.00015617 387.70870383181176 24.876 0.8822 24.876 24.475 25.358 0 62 25 3 0 0 0 0.47729 1 4277 4277 29.082 0 1 3338300 6621 25737 3977 3981 6960 6960 0.007400831407608166 DGVSGLAR 8 Unmodified _DGVSGLAR_ 0 0 0 sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2;sp|F5HG51|PRIM_HCMVMDNAprimaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL70PE=3SV=1 sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2 sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7088928222656 2 387.70886 773.403166 0.90787 0.00035199 -0.69535 -0.00026959 0.21252 8.2397E-05 387.70852817670254 26.214 0.88741 24.432 24.039 24.926 -1.7821 58 25 3 0 0 0 0.47729 1 4566 4566 29.082 0 1 4653000 6622 25737 3977 3981 6961 6961 0.007400831407608166 DGYCCYEF 8 Unmodified _DGYCCYEF_ 0 0 0 REV__ENSG00000122025|ENST00000241453|FLT3 REV__ENSG00000122025|ENST00000241453|FLT3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 500.1708984375 2 500.164779 998.315004 NaN NaN NaN NaN NaN NaN NaN 140.2 1 140.2 139.7 140.7 0 0 0 0 0.2396 1 27903 27903 0.12286 0 1 + 6623 15672 3978 3982 6962 6962 -0.18422041556391378 DHACRHLL 8 Unmodified _DHACRHLL_ 0 0 0 ENST00000317204.10_1_11:1296275-1296467:-|nuORF ENST00000317204.10_1_11:1296275-1296467:-|nuORF ENST00000317204.10_1_11:1296275-1296467:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.18560791015625 3 322.164233 963.470869 NaN NaN NaN NaN NaN NaN NaN 50.741 1 47.859 47.359 48.359 -2.8824 0 0 0 0.21486 1 9630 9630 6.7232 1.8262 1 6624 8685 3979 3983 6963 6963 -0.012327902000834001 DHALPSPH 8 Unmodified _DHALPSPH_ 0 0 0 ENST00000447501.5_1_7:56141874-56147121:+|nuORF ENST00000447501.5_1_7:56141874-56147121:+|nuORF ENST00000447501.5_1_7:56141874-56147121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2156677246094 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 159.31 1 159.31 158.81 159.81 0 0 0 0 0.21486 1 31985 31985 4.756 2.1785 1 6625 9950 3980 3984 6964 6964 -0.027245144849530334 DHALPSPH 8 Unmodified _DHALPSPH_ 0 0 0 ENST00000447501.5_1_7:56141874-56147121:+|nuORF ENST00000447501.5_1_7:56141874-56147121:+|nuORF ENST00000447501.5_1_7:56141874-56147121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21527099609375 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 158.21 1 153.41 152.91 153.91 -4.7952 0 0 0 0.21486 1 31459 31459 7.9102 2.1497 1 6626 9950 3980 3984 6965 6965 -0.027245144849530334 DHALPSPH 8 Unmodified _DHALPSPH_ 0 0 0 ENST00000447501.5_1_7:56141874-56147121:+|nuORF ENST00000447501.5_1_7:56141874-56147121:+|nuORF ENST00000447501.5_1_7:56141874-56147121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2155456542969 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 170.7 1 165.79 165.29 166.29 -4.9149 0 0 0 0.21486 1 33764 33764 7.9102 3.5809 1 6627 9950 3980 3984 6966 6966 -0.027245144849530334 DHALPSPH 8 Unmodified _DHALPSPH_ 0 0 0 ENST00000447501.5_1_7:56141874-56147121:+|nuORF ENST00000447501.5_1_7:56141874-56147121:+|nuORF ENST00000447501.5_1_7:56141874-56147121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21649169921875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 112.64 1 108.37 107.87 108.87 -4.2725 0 0 0 0.21486 1 21689 21689 9.3474 3.587 1 6628 9950 3980 3984 6967 6967 -0.027245144849530334 DHALPSPH 8 Unmodified _DHALPSPH_ 0 0 0 ENST00000447501.5_1_7:56141874-56147121:+|nuORF ENST00000447501.5_1_7:56141874-56147121:+|nuORF ENST00000447501.5_1_7:56141874-56147121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2160339355469 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 116.68 1 112.32 111.82 112.82 -4.3585 0 0 0 0.21452 1 22461 22461 13.508 4.9146 1 6629 9950 3980 3984 6968 6968 -0.027245144849530334 DHANLIQLY 9 Unmodified _DHANLIQLY_ 0 0 0 MYLK4|p.E336Dfs*7|1|0.06|ENSG00000145949|chr6:2678252-2678252|C/-|frameshift_variant;nc|ENSG00000145949|Q86YV6-2|MYLK4;ENSG00000145949|ENST00000274643|MYLK4 MYLK4|p.E336Dfs*7|1|0.06|ENSG00000145949|chr6:2678252-2678252|C/-|frameshift_variant MYLK4|p.E336Dfs*7|1|0.06|ENSG00000145949|chr6:2678252-2678252|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7813720703125 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 119.31 1 119.31 118.81 119.81 0 0 0 0 0.19669 1 23505 23505 0.40827 0.23627 1 6630 4631 3981 3985 6969 6969 0.011205549549231364 DHFFRGSF 8 Unmodified _DHFFRGSF_ 0 0 0 REV__ENSG00000160294|ENST00000291688|MCM3AP REV__ENSG00000160294|ENST00000291688|MCM3AP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.15972900390625 3 338.159365 1011.45626 NaN NaN NaN NaN NaN NaN NaN 86.786 1 82.836 82.336 83.336 -3.9503 0 0 0 0.21486 1 16525 16525 1.8442 0 1 + 6631 17413 3982 3986 6970 6970 -0.04900539076561472 DHGMKKGR 8 Unmodified _DHGMKKGR_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16485595703125 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 78.34 1 78.34 77.84 78.84 0 0 0 0 0.21486 1 15245 15245 3.5965 1.9439 1 + 6632 15083 3983 3987 6971 6971 0.004232097999306461 DHGMKKGR 8 Unmodified _DHGMKKGR_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16949462890625 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 78.42 1 78.42 77.92 78.92 0 0 0 0 0.23626 1 15263 15263 0.063987 0.060607 1 + 6633 15083 3983 3987 6972 6972 0.004232097999306461 DHGMKKGR 8 Unmodified _DHGMKKGR_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650390625 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 72.221 1 68.91 68.41 69.41 -3.3107 0 0 0 0.23626 1 14075 14075 0.12286 0 1 + 6634 15083 3983 3987 6973 6973 0.004232097999306461 DHGMKKGR 8 Unmodified _DHGMKKGR_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647644042969 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 82.163 1 78.289 77.789 78.789 -3.8736 0 0 0 0.23626 1 15607 15607 0.063987 0 1 + 6635 15083 3983 3987 6974 6974 0.004232097999306461 DHGMKKGR 8 Unmodified _DHGMKKGR_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647644042969 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 82.174 1 78.3 77.8 78.8 -3.8736 0 0 0 0.21486 1 15609 15609 3.5965 0.8613 1 + 6636 15083 3983 3987 6975 6975 0.004232097999306461 DHGMKKGR 8 Unmodified _DHGMKKGR_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648864746094 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 82.406 1 78.532 78.032 79.032 -3.8736 0 0 0 0.23626 1 15658 15658 0.063987 0 1 + 6637 15083 3983 3987 6976 6976 0.004232097999306461 DHGMKKGR 8 Unmodified _DHGMKKGR_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 81.961 1 78.273 77.773 78.773 -3.6879 0 0 0 0.23881 1 15623 15623 0.063987 0 1 + 6638 15083 3983 3987 6977 6977 0.004232097999306461 DHGMKKGR 8 Unmodified _DHGMKKGR_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 81.977 1 78.289 77.789 78.789 -3.6879 0 0 0 0.21486 1 15625 15625 3.5965 0 1 + 6639 15083 3983 3987 6978 6978 0.004232097999306461 DHGMKKGR 8 Unmodified _DHGMKKGR_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16485595703125 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 82.205 1 78.507 78.007 79.007 -3.6985 0 0 0 0.23626 1 15675 15675 0.063987 0 1 + 6640 15083 3983 3987 6979 6979 0.004232097999306461 DHGMKKGR 8 Unmodified _DHGMKKGR_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16485595703125 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 82.227 1 78.528 78.028 79.028 -3.6985 0 0 0 0.21486 1 15679 15679 3.5965 0.8613 1 + 6641 15083 3983 3987 6980 6980 0.004232097999306461 DHHEEDMDMSD 11 Unmodified _DHHEEDMDMSD_ 0 0 0 nc|ENSG00000116754|Q05519-2|SRSF11;ENSG00000116754|ENST00000370949|SRSF11 nc|ENSG00000116754|Q05519-2|SRSF11 nc|ENSG00000116754|Q05519-2|SRSF11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7681884765625 3 454.152058 1359.43434 0.026913 1.2223E-05 0.2682 0.0001218 0.29511 0.00013402 454.15232624973436 25.405 0.34959 23.871 23.643 23.992 -1.5342 13 9 2 0 0 0 0.96173 1 4191 4191 4.1166 2.9018 1 466870 6642 2952 3984 3988 6981 6981 -0.23099544460296784 DHHEEDMDMSD 11 Unmodified _DHHEEDMDMSD_ 0 0 0 nc|ENSG00000116754|Q05519-2|SRSF11;ENSG00000116754|ENST00000370949|SRSF11 nc|ENSG00000116754|Q05519-2|SRSF11 nc|ENSG00000116754|Q05519-2|SRSF11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7475891113281 3 454.152058 1359.43434 -0.13384 -6.0782E-05 0.46947 0.00021321 0.33564 0.00015243 454.1522413148242 25.609 0.20876 23.756 23.638 23.847 -1.8534 8 5 2 0 0 0 0.96197 1 4200 4200 1.2148 0.80657 1 341350 6643 2952 3984 3988 6982 6982 -0.23099544460296784 DHIASAFL 8 Unmodified _DHIASAFL_ 0 0 0 REV__nc|ENSG00000285188|Q08493-2|PDE4C REV__nc|ENSG00000285188|Q08493-2|PDE4C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2161560058594 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 108.99 1 108.99 108.49 109.49 0 0 0 0 0.21486 1 21430 21430 10.183 0 1 + 6644 15006 3985 3989 6983 6983 -0.0021045968237558554 DHITNISY 8 Unmodified _DHITNISY_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77923583984375 2 481.732532 961.45051 -0.31974 -0.00015403 1.0927 0.00052641 0.77301 0.00037238 481.7328862560144 65.893 0.61967 65.893 65.586 66.205 0 29 17 2 0 0 0 0.27447 1 12733 12733 37.974 5.6685 1 3060500 6645 7627 3986 3990 6984 6984 -0.031756823789010014 DHKYYNQHRYF 11 Unmodified _DHKYYNQHRYF_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.8629150390625 2 785.862931 1569.71131 NaN NaN NaN NaN NaN NaN NaN 176.6 1 171.81 171.31 172.31 -4.7898 0 0 0 0.22632 1 36114 36114 0.026206 0 1 6646 12285 3987 3991 6985 6985 -0.05075722399010374 DHLESQDPRY 10 Unmodified _DHLESQDPRY_ 0 0 0 ENSG00000114455|ENST00000467761|HHLA2 ENSG00000114455|ENST00000467761|HHLA2 ENSG00000114455|ENST00000467761|HHLA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.756103515625 2 630.286191 1258.55783 1.1245 0.00070873 2.4852 0.0015664 3.6097 0.0022751 630.2876813286472 160.06 0.18048 155.26 155.12 155.3 -4.7952 6 4 2 0 0 0 0.744 1 31819 31819 6.7232 0.99131 1 1120200 6647 2791 3988 3992 6986 6986 -0.06110757235342135 DHLKVHSFYNT 11 Unmodified _DHLKVHSFYNT_ 0 0 0 ENST00000273859.7_1_4:47594224-47594362:+|nuORF ENST00000273859.7_1_4:47594224-47594362:+|nuORF ENST00000273859.7_1_4:47594224-47594362:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75750732421875 3 454.226326 1359.65715 -0.011217 -5.0949E-06 1.6022 0.00072775 1.5909 0.00072265 454.2275353639289 106.23 0.93059 101.85 101.51 102.44 -4.3764 37 26 2 0 0 0 0.96068 1 20325 20325 5.8681 3.2369 1 2399400 6648 8421 3989 3993 6987 6987 -0.008293145505604116 DHLLMNVK 8 Unmodified _DHLLMNVK_ 0 0 0 ENST00000480342.5_1_1:8525723-8716473:-|nuORF;RERE|p.S1084Rfs*173|1|0.21|ENSG00000142599|chr1:8360258-8360258|C/-|frameshift_variant;RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant;ENSG00000142599|ENST00000400908|RERE ENST00000480342.5_1_1:8525723-8716473:-|nuORF ENST00000480342.5_1_1:8525723-8716473:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1940612792969 3 323.844389 968.511337 0.14666 4.7493E-05 -0.6397 -0.00020716 -0.49305 -0.00015967 323.84408752314226 62.738 0.59034 59.323 58.914 59.504 -3.4158 35 16 3 0 0 0 0.75713 1 11691 11691 6.2058 2.6093 1 1899600 6649 4428 3990 3994 6988 6988 0.025821313996857498 DHLLMNVK 8 Unmodified _DHLLMNVK_ 0 0 0 ENST00000480342.5_1_1:8525723-8716473:-|nuORF;RERE|p.S1084Rfs*173|1|0.21|ENSG00000142599|chr1:8360258-8360258|C/-|frameshift_variant;RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant;ENSG00000142599|ENST00000400908|RERE ENST00000480342.5_1_1:8525723-8716473:-|nuORF ENST00000480342.5_1_1:8525723-8716473:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1856994628906 3 323.844389 968.511337 -0.46232 -0.00014972 -0.16986 -5.5009E-05 -0.63218 -0.00020473 323.844238074925 62.545 0.69831 59.305 58.929 59.627 -3.2395 36 19 3 0 0 0 0.75713 2 11702 11702;11743 6.2058 2.6093 1 2275500 6650 4428 3990 3994 6989;6990 6989 0.025821313996857498 DHLLMNVK 8 Unmodified _DHLLMNVK_ 0 0 0 ENST00000480342.5_1_1:8525723-8716473:-|nuORF;RERE|p.S1084Rfs*173|1|0.21|ENSG00000142599|chr1:8360258-8360258|C/-|frameshift_variant;RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant;ENSG00000142599|ENST00000400908|RERE ENST00000480342.5_1_1:8525723-8716473:-|nuORF ENST00000480342.5_1_1:8525723-8716473:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 323.844389 968.511337 -0.76909 -0.00024907 0.50514 0.00016359 -0.26395 -8.548E-05 323.844361444705 59.618 0.64585 59.618 59.249 59.895 0 0.20243 0.00059461 NaN 6.2058 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2344500 6651 4428 3990 3994 0.025821313996857498 DHLRIHTGE 9 Unmodified _DHLRIHTGE_ 0 0 0 ENSG00000136866|ENST00000374227|ZFP37;nc|ENSG00000136866|Q9Y6Q3-3|ZFP37;nc|ENSG00000136866|Q9Y6Q3-2|ZFP37 ENSG00000136866|ENST00000374227|ZFP37 ENSG00000136866|ENST00000374227|ZFP37 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20391845703125 3 359.852712 1076.53631 -0.13268 -4.7745E-05 -3.8276 -0.0013774 -3.9603 -0.0014251 359.851308572308 22.123 0.38191 20.669 20.528 20.91 -1.4535 17 10 2 0 0 0 0.85359 1 3525 3525 7.609 0 1 1061800 6652 4044 3991 3995 6991 6991 0.0010990252662850253 DHLRQRDRVRT 11 Unmodified _DHLRQRDRVRT_ 0 0 0 ENST00000272217.6_1_1:202104910-202113731:-|nuORF ENST00000272217.6_1_1:202104910-202113731:-|nuORF ENST00000272217.6_1_1:202104910-202113731:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 484.6026611328125 3 484.60279 1450.78654 NaN NaN NaN NaN NaN NaN NaN 178.46 1 173.67 173.17 174.17 -4.7898 0 0 0 0.22632 1 36512 36512 0 0 1 6653 8405 3992 3996 6992 6992 0.0791787985206156 DHLYSMQNS 9 Unmodified _DHLYSMQNS_ 0 0 0 nc|ENSG00000162761|Q8TE12-2|LMX1A;ENSG00000162761|ENST00000342310|LMX1A nc|ENSG00000162761|Q8TE12-2|LMX1A nc|ENSG00000162761|Q8TE12-2|LMX1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7738647460938 2 547.732206 1093.44986 0.2357 0.0001291 -0.30446 -0.00016676 -0.068759 -3.7661E-05 547.7321994312365 38.975 1.1513 36.57 36.021 37.173 -2.4049 83 32 3 0 0 0 0.77734 1 7014 7014 19.257 2.3147 1 2842100 6654 5365 3993 3997 6993 6993 -0.09312845090266819 DHMEMEPETME 11 Unmodified _DHMEMEPETME_ 0 0 0 FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant;FRMPD4|p.S1105Vfs*3|1|0.29|ENSG00000169933|chrX:12718134-12718134|A/-|frameshift_variant;FRMPD4|p.L1210Pfs*39|1|0.05|ENSG00000169933|chrX:12718454-12718455|-/CT|frameshift_variant;nc|ENSG00000169933|Q14CM0|FRMPD4;ENSG00000169933|ENST00000675598|FRMPD4 FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2399597167969 3 460.170173 1377.48869 0.026404 1.215E-05 0.3507 0.00016138 0.3771 0.00017353 460.1703297792162 37.886 0.59423 35.444 35.073 35.668 -2.4419 44 16 4 0 0 0 0.90919 1 6725 6725 13.519 0 1 3724900 6655 6023 3994 3998 6994 6994 -0.18495668633090645 DHNFCVVK 8 Unmodified _DHNFCVVK_ 0 0 0 REV__ENST00000474802.1_1_2:27355436-27356101:-|nuORF REV__ENST00000474802.1_1_2:27355436-27356101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2319641113281 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 178.93 1 178.93 178.43 179.43 0 0 0 0 0.21486 1 37064 37064 0.6015 0 1 + 6656 16431 3995 3999 6995 6995 -0.03307014668507691 DHQERMIRG 9 Unmodified _DHQERMIRG_ 0 0 0 ENST00000421692.5_2_6:30003742-30025305:-|nuORF;ENST00000431012.5_1_6:30024744-30025305:-|nuORF ENST00000421692.5_2_6:30003742-30025305:-|nuORF ENST00000421692.5_2_6:30003742-30025305:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2109680175781 3 381.189218 1140.54582 NaN NaN NaN NaN NaN NaN NaN 141.78 1 137.13 136.63 137.63 -4.6493 0 0 0 0.23508 1 28014 28014 3.8763 0.27984 1 6657 9671 3996 4000 6996 6996 -0.018826524595169758 DHQERMIRG 9 Unmodified _DHQERMIRG_ 0 0 0 ENST00000421692.5_2_6:30003742-30025305:-|nuORF;ENST00000431012.5_1_6:30024744-30025305:-|nuORF ENST00000421692.5_2_6:30003742-30025305:-|nuORF ENST00000421692.5_2_6:30003742-30025305:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21148681640625 3 381.189218 1140.54582 NaN NaN NaN NaN NaN NaN NaN 75.549 1 71.826 71.326 72.326 -3.7227 0 0 0 0.19634 1 14292 14292 0.073264 0 1 6658 9671 3996 4000 6997 6997 -0.018826524595169758 DHSGDNDY 8 Unmodified _DHSGDNDY_ 0 0 0 REV__ENST00000517862.1_1_8:87552529-87557099:+|nuORF REV__ENST00000517862.1_1_8:87552529-87557099:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5357360839844 2 461.662303 921.310054 0.65696 0.00030329 -1.2138 -0.00056038 -0.55687 -0.00025709 461.6611643261337 103.82 0.70764 99.77 99.382 100.09 -4.0543 45 19 3 0 0 0 0.88047 1 19905 19905 0.79363 0 1 3049700 + 6659 14476 3997 4001 6998 6998 -0.15374886103143126 DHSGDNDY 8 Unmodified _DHSGDNDY_ 0 0 0 REV__ENST00000517862.1_1_8:87552529-87557099:+|nuORF REV__ENST00000517862.1_1_8:87552529-87557099:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.662303 921.310054 -0.23178 -0.000107 -1.6016 -0.00073941 -1.8334 -0.00084642 461.66150069771265 103.91 0.54653 99.694 99.485 100.03 -4.2183 -0.034825 -0.00019694 NaN 0.79363 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1887500 + 6660 14476 3997 4001 -0.15374886103143126 DHSGDNDY 8 Unmodified _DHSGDNDY_ 0 0 0 REV__ENST00000517862.1_1_8:87552529-87557099:+|nuORF REV__ENST00000517862.1_1_8:87552529-87557099:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.662303 921.310054 0.1438 6.6386E-05 -1.2839 -0.00059273 -1.1401 -0.00052635 461.6614120045873 104.07 0.69266 99.723 99.35 100.04 -4.346 -0.0058281 9.6417E-05 NaN 0.79363 39 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2614100 + 6661 14476 3997 4001 -0.15374886103143126 DHSLHPPL 8 Unmodified _DHSLHPPL_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;WDFY3|p.L1060Cfs*41|1|0.4|ENSG00000163625|chr4:84794968-84794968|A/-|frameshift_variant;WDFY3|p.N1207Tfs*16|1|0.37|ENSG00000163625|chr4:84789775-84789775|T/-|frameshift_variant;WDFY3|p.L1842Yfs*10|1|0.19|ENSG00000163625|chr4:84755300-84755300|A/-|frameshift_variant nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23828125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 99.102 1 94.969 94.469 95.469 -4.1326 0 0 0 0.21452 1 19463 19463 13.508 0.97634 1 6662 5449 3998 4002 6999 6999 0.00036345066178000707 DHSLHPPL 8 Unmodified _DHSLHPPL_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;WDFY3|p.L1060Cfs*41|1|0.4|ENSG00000163625|chr4:84794968-84794968|A/-|frameshift_variant;WDFY3|p.N1207Tfs*16|1|0.37|ENSG00000163625|chr4:84789775-84789775|T/-|frameshift_variant;WDFY3|p.L1842Yfs*10|1|0.19|ENSG00000163625|chr4:84755300-84755300|A/-|frameshift_variant nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23199462890625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 100.42 1 96.256 95.756 96.756 -4.1594 0 0 0 0.21486 1 19736 19736 9.3474 3.587 1 6663 5449 3998 4002 7000 7000 0.00036345066178000707 DHSPYFTN 8 Unmodified _DHSPYFTN_ 0 0 0 nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.N1793Kfs*14|1|0.21|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant;FAT3|p.V1884Sfs*21|1|0.26|ENSG00000165323|chr11:92799110-92799110|G/-|frameshift_variant;FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant;FAT3|p.P4078Rfs*36|1|0.42|ENSG00000165323|chr11:92883135-92883135|C/-|frameshift_variant;FAT3|p.V4210Cfs*6|1|0.05|ENSG00000165323|chr11:92889212-92889213|-/T|frameshift_variant nc|ENSG00000165323|Q8TDW7|FAT3 nc|ENSG00000165323|Q8TDW7|FAT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2647399902344 2 490.709057 979.40356 0.06172 3.0286E-05 0.032511 1.5953E-05 0.09423 4.624E-05 490.709299449898 64.789 0.41089 61.506 61.281 61.692 -3.2832 12 11 2 0 0 0 1.0147 1 12179 12179 5.2307 0 1 331090 6664 5619 3999 4003 7001 7001 -0.08696541930044077 DHSVLLVGFG 10 Unmodified _DHSVLLVGFG_ 0 0 0 CTSW|p.A335Pfs*34|1|0.24|ENSG00000172543|chr11:65883402-65883402|G/-|frameshift_variant;ENSG00000172543|ENST00000307886|CTSW CTSW|p.A335Pfs*34|1|0.24|ENSG00000172543|chr11:65883402-65883402|G/-|frameshift_variant CTSW|p.A335Pfs*34|1|0.24|ENSG00000172543|chr11:65883402-65883402|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2816162109375 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 167.03 1 167.03 166.53 167.53 0 0 0 0 0.22588 1 34106 34106 10.074 1.4806 1 6665 753 4000 4004 7002 7002 0.02517456443251831 DHVDKQSS 8 Unmodified _DHVDKQSS_ 0 0 0 ENST00000549154.1_1_12:53683840-53684149:+|nuORF ENST00000549154.1_1_12:53683840-53684149:+|nuORF ENST00000549154.1_1_12:53683840-53684149:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23687744140625 2 458.211963 914.409374 NaN NaN NaN NaN NaN NaN NaN 28.728 1 26.972 26.472 27.472 -1.7552 0 0 0 0.22674 1 4863 4863 3.5871 0 1 6666 11159 4001 4005 7003 7003 -0.05125443418376108 DHVYTYSY 8 Unmodified _DHVYTYSY_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6898803710938 2 524.224539 1046.43453 0.35275 0.00018492 -0.39195 -0.00020547 -0.039202 -2.0551E-05 524.2243322286448 35.784 0.59419 33.507 33.246 33.84 -2.2766 37 16 3 0 0 0 0.98792 1 6297 6297 9.3474 0 1 4798000 6667 7379 4002 4006 7004 7004 -0.08683388615804688 DIAGDSLAGH 10 Unmodified _DIAGDSLAGH_ 0 0 0 REV__ENSG00000160294|ENST00000291688|MCM3AP REV__ENSG00000160294|ENST00000291688|MCM3AP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7325134277344 2 478.227613 954.440674 -0.11602 -5.5486E-05 0.68526 0.00032771 0.56923 0.00027222 478.2278375779481 19.581 0.31374 19.581 19.344 19.658 0 15 8 2 0 0 0 0.34654 1 3178 3178 34.402 11.665 1 693000 + 6668 17413 4003 4007 7005 7005 -0.03836870384282065 DIAGDSLAGH 10 Unmodified _DIAGDSLAGH_ 0 0 0 REV__ENSG00000160294|ENST00000291688|MCM3AP REV__ENSG00000160294|ENST00000291688|MCM3AP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.227613 954.440674 -0.11602 -5.5486E-05 0.68526 0.00032771 0.56923 0.00027222 478.2278375779481 19.581 0.31374 19.581 19.344 19.658 0 0 0 NaN 34.402 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 693000 + 6669 17413 4003 4007 -0.03836870384282065 DIARRPSF 8 Unmodified _DIARRPSF_ 0 0 0 REV__ENSG00000229474|ENST00000682850|PATL2 REV__ENSG00000229474|ENST00000682850|PATL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.232421875 2 481.264333 960.514114 NaN NaN NaN NaN NaN NaN NaN 120.12 1 115.48 114.98 115.98 -4.645 0 0 0 0.21486 1 23056 23056 9.3474 0.75416 1 + 6670 19741 4004 4008 7006 7006 0.032277228488510445 DICFSSITA 9 Unmodified _DICFSSITA_ 0 0 0 ENSG00000172742|ENST00000641962|OR4D9 ENSG00000172742|ENST00000641962|OR4D9 ENSG00000172742|ENST00000641962|OR4D9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.722900390625 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 73.428 1 73.428 72.928 73.928 0 0 0 0 0.20628 1 14250 14250 21.747 0 1 6671 6236 4005 4009 7007 7007 -0.047415603451327115 DICFSSITA 9 Unmodified _DICFSSITA_ 0 0 0 ENSG00000172742|ENST00000641962|OR4D9 ENSG00000172742|ENST00000641962|OR4D9 ENSG00000172742|ENST00000641962|OR4D9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7322082519531 2 478.723318 955.432083 -0.19293 -9.2361E-05 -1.2104 -0.00057943 -1.4033 -0.00067179 478.72229065546213 109.6 0.70671 105.15 104.78 105.49 -4.4518 26 19 2 0 0 0 0.40602 1 20993 20993 25.399 4.9457 1 901920 6672 6236 4005 4009 7008 7008 -0.047415603451327115 DICFSSITA 9 Unmodified _DICFSSITA_ 0 0 0 ENSG00000172742|ENST00000641962|OR4D9 ENSG00000172742|ENST00000641962|OR4D9 ENSG00000172742|ENST00000641962|OR4D9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72265625 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 52.716 1 49.628 49.128 50.128 -3.0876 0 0 0 0.22962 1 9697 9697 14.838 0 1 6673 6236 4005 4009 7009 7009 -0.047415603451327115 DICFTEKT 8 Unmodified _DICFTEKT_ 0 0 0 REV__ENSG00000154099|ENST00000378553|DNAAF1 REV__ENSG00000154099|ENST00000378553|DNAAF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72198486328125 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 105.14 1 105.14 104.64 105.64 0 0 0 0 0.21039 1 20667 20667 16.942 0 1 + 6674 17165 4006 4010 7010 7010 -0.04741560345121343 DICFTEKT 8 Unmodified _DICFTEKT_ 0 0 0 REV__ENSG00000154099|ENST00000378553|DNAAF1 REV__ENSG00000154099|ENST00000378553|DNAAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7314758300781 2 478.723318 955.432083 -0.43272 -0.00020715 -0.38873 -0.00018609 -0.82145 -0.00039325 478.7222858116056 109.37 0.39069 104.99 104.85 105.24 -4.3776 13 10 2 0 0 0 0.69031 1 21598 21598 15.847 0 1 629410 + 6675 17165 4006 4010 7011 7011 -0.04741560345121343 DICFTEKT 8 Unmodified _DICFTEKT_ 0 0 0 REV__ENSG00000154099|ENST00000378553|DNAAF1 REV__ENSG00000154099|ENST00000378553|DNAAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7322082519531 2 478.723318 955.432083 -0.19293 -9.2361E-05 -1.2104 -0.00057943 -1.4033 -0.00067179 478.72229065546213 109.6 0.70671 105.15 104.78 105.49 -4.4518 26 19 2 0 0 0 8448 1 20990 20990 0.62683 0.49901 1 901920 + 6676 17165 4006 4010 7012 7012 -0.04741560345121343 DICFTTSVA 9 Unmodified _DICFTTSVA_ 0 0 0 ENSG00000188558|ENST00000641804|OR2G6;OR2G6|p.N269Tfs*12|1|0.27|ENSG00000188558|chr1:248522448-248522448|A/-|frameshift_variant ENSG00000188558|ENST00000641804|OR2G6 ENSG00000188558|ENST00000641804|OR2G6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7235412597656 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 123.39 1 123.39 122.89 123.89 0 0 0 0 0.23508 1 24322 24322 10.824 1.4765 1 6677 7177 4007 4011 7013 7013 -0.04741560345121343 DICFTTSVA 9 Unmodified _DICFTTSVA_ 0 0 0 ENSG00000188558|ENST00000641804|OR2G6;OR2G6|p.N269Tfs*12|1|0.27|ENSG00000188558|chr1:248522448-248522448|A/-|frameshift_variant ENSG00000188558|ENST00000641804|OR2G6 ENSG00000188558|ENST00000641804|OR2G6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7239685058594 2 478.723318 955.432083 -0.016123 -7.7184E-06 0.9467 0.00045321 0.93058 0.00044549 478.7237034430472 84.068 2.6812 80.46 79.266 81.948 -3.6079 138 76 2 0 0 0 0.55979 1 16247 16247 15.847 2.3393 1 3096100 6678 7177 4007 4011 7014 7014 -0.04741560345121343 DICFTTSVA 9 Unmodified _DICFTTSVA_ 0 0 0 ENSG00000188558|ENST00000641804|OR2G6;OR2G6|p.N269Tfs*12|1|0.27|ENSG00000188558|chr1:248522448-248522448|A/-|frameshift_variant ENSG00000188558|ENST00000641804|OR2G6 ENSG00000188558|ENST00000641804|OR2G6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7237243652344 2 478.723318 955.432083 -0.03929 -1.8809E-05 0.83419 0.00039934 0.7949 0.00038054 478.723623360889 84.283 2.4981 80.571 79.306 81.804 -3.7117 120 71 2 0 0 0 0.46541 1 15862 15862 21.747 9.2151 1 3113500 6679 7177 4007 4011 7015 7015 -0.04741560345121343 DICTFVFSY 9 Unmodified _DICTFVFSY_ 0 0 0 ENSG00000182687|ENST00000329003|GALR2 ENSG00000182687|ENST00000329003|GALR2 ENSG00000182687|ENST00000329003|GALR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7930297851562 2 547.746793 1093.47903 NaN NaN NaN NaN NaN NaN NaN 112.39 1 108.11 107.61 108.61 -4.2725 0 0 0 0.23508 1 21641 21641 11.64 2.2929 1 6680 6805 4008 4012 7016 7016 -0.06396700793970922 DICTTEDYPGF 11 Unmodified _DICTTEDYPGF_ 0 0 0 REV__ENSG00000241945|ENST00000291576|PWP2 REV__ENSG00000241945|ENST00000291576|PWP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7613525390625 2 630.758086 1259.50162 NaN NaN NaN NaN NaN NaN NaN 164.64 1 159.58 159.08 160.08 -5.0648 0 0 0 0.23324 1 32119 32119 5.7319 2.4505 1 + 6681 19789 4009 4013 7017 7017 -0.1177514618702844 DIDCHQNCV 9 Unmodified _DIDCHQNCV_ 0 0 0 REV__ENSG00000117983|ENST00000529681|MUC5B REV__ENSG00000117983|ENST00000529681|MUC5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6918334960938 2 523.705134 1045.39571 NaN NaN NaN NaN NaN NaN NaN 154.62 1 149.84 149.34 150.34 -4.7791 0 0 0 0.19684 1 30736 30736 0.073264 0 1 + 6682 15534 4010 4014 7018 7018 -0.12516760513494773 DIDDDYLDNY 10 Unmodified _DIDDDYLDNY_ 0 0 0 REV__UBE2R2|p.D208N|1|0.24|ENSG00000107341|chr9:33917142-33917142|G/A|missense_variant REV__UBE2R2|p.D208N|1|0.24|ENSG00000107341|chr9:33917142-33917142|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7673950195312 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 117.69 1 117.69 117.19 118.19 0 0 0 0 0.22588 1 23182 23182 3.9444 0 1 + 6683 25511 4011 4015 7019 7019 -0.13636984557206233 DIDECESGAHQ 11 Unmodified _DIDECESGAHQ_ 0 0 0 ENST00000530806.5_2_11:65635459-65636005:-|nuORF;ENSG00000172638|ENST00000307998|EFEMP2 ENST00000530806.5_2_11:65635459-65636005:-|nuORF ENST00000530806.5_2_11:65635459-65636005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2017822265625 2 602.232767 1202.45098 NaN NaN NaN NaN NaN NaN NaN 167.04 1 162.25 161.75 162.75 -4.7898 0 0 0 0.23429 1 33634 33634 4.897 0.95262 1 6684 6233 4012 4016 7020 7020 -0.14214675512016584 DIDEDPCL 8 Unmodified _DIDEDPCL_ 0 0 0 ENSG00000102753|ENST00000261667|KPNA3 ENSG00000102753|ENST00000261667|KPNA3 ENSG00000102753|ENST00000261667|KPNA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24615478515625 2 460.189308 918.364063 -0.037453 -1.7236E-05 1.0335 0.00047561 0.99605 0.00045837 460.1897670978529 115.91 0.65097 111.42 111.07 111.72 -4.486 32 18 2 0 0 0 0.74718 1 22822 22822 18.135 1.1927 1 1077900 6685 2143 4013 4017 7021 7021 -0.0983842999579565 DIDEDPCL 8 Unmodified _DIDEDPCL_ 0 0 0 ENSG00000102753|ENST00000261667|KPNA3 ENSG00000102753|ENST00000261667|KPNA3 ENSG00000102753|ENST00000261667|KPNA3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.189308 918.364063 0.23185 0.00010669 0.8422 0.00038757 1.074 0.00049426 460.189623658203 116.04 1.1387 111.46 111.08 112.22 -4.5815 0.062304 7.0698E-05 NaN 18.135 45 32 2 NaN NaN NaN NaN 0 NaN NaN 0 1571800 6686 2143 4013 4017 -0.0983842999579565 DIDHCFAAA 9 Unmodified _DIDHCFAAA_ 0 0 0 REV__ENSG00000095464|ENST00000371447|PDE6C REV__ENSG00000095464|ENST00000371447|PDE6C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7856750488281 2 481.70546 961.396366 NaN NaN NaN NaN NaN NaN NaN 161.97 1 157.18 156.68 157.68 -4.7898 0 0 0 0.23508 1 32213 32213 7.2892 2.0586 1 + 6687 14609 4014 4018 7022 7022 -0.08587597802136315 DIDLDALAA 9 Unmodified _DIDLDALAA_ 0 0 0 EIF5B|p.K748Nfs*29|1|0.22|ENSG00000158417|chr2:99382889-99382889|A/-|frameshift_variant;EIF5B|p.Q1121Rfs*13|1|0.27|ENSG00000158417|chr2:99396867-99396868|AG/-|frameshift_variant;ENSG00000158417|ENST00000289371|EIF5B EIF5B|p.K748Nfs*29|1|0.22|ENSG00000158417|chr2:99382889-99382889|A/-|frameshift_variant EIF5B|p.K748Nfs*29|1|0.22|ENSG00000158417|chr2:99382889-99382889|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2385559082031 2 458.73474 915.454927 0.021154 9.7041E-06 0.24176 0.0001109 0.26291 0.00012061 458.73480071461546 116.72 1.0449 112.24 111.79 112.84 -4.486 60 29 3 0 0 0 0.12295 1 23059 23059 54.774 6.4277 1 7449600 6688 934 4015 4019 7023 7023 -0.006182179560028089 DIDLDALAA 9 Unmodified _DIDLDALAA_ 0 0 0 EIF5B|p.K748Nfs*29|1|0.22|ENSG00000158417|chr2:99382889-99382889|A/-|frameshift_variant;EIF5B|p.Q1121Rfs*13|1|0.27|ENSG00000158417|chr2:99396867-99396868|AG/-|frameshift_variant;ENSG00000158417|ENST00000289371|EIF5B EIF5B|p.K748Nfs*29|1|0.22|ENSG00000158417|chr2:99382889-99382889|A/-|frameshift_variant EIF5B|p.K748Nfs*29|1|0.22|ENSG00000158417|chr2:99382889-99382889|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2375183105469 2 458.73474 915.454927 0.29569 0.00013564 -0.11544 -5.2955E-05 0.18025 8.2688E-05 458.73465081560187 116.99 0.98015 112.4 111.94 112.92 -4.5815 57 27 3 0 0 0 0.10777 1 22452 22452 67.344 0 1 8551400 6689 934 4015 4019 7024 7024 -0.006182179560028089 DIDLNKVL 8 Unmodified _DIDLNKVL_ 0 0 0 tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1 tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1 tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2402038574219 2 465.26875 928.522947 -0.11678 -5.4333E-05 -0.13881 -6.4586E-05 -0.25559 -0.00011892 465.26849225645793 94.487 0.89758 94.487 94.005 94.903 0 54 25 3 0 0 0 0.17017 1 18494 18494 77.984 0 1 5012700 6690 26093 4016 4020 7025 7025 0.05582651694669494 DIDLNKVL 8 Unmodified _DIDLNKVL_ 0 0 0 tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1 tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1 tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2403869628906 2 465.26875 928.522947 0.088472 4.1163E-05 -0.049823 -2.3181E-05 0.038649 1.7982E-05 465.2686344857421 98.2 0.8822 94.244 93.749 94.631 -3.9564 55 25 3 0 0 0 0.17017 1 18852 18852 67.344 3.1075 1 3018400 6691 26093 4016 4020 7026 7026 0.05582651694669494 DIEGFNHTY 9 Unmodified _DIEGFNHTY_ 0 0 0 REV__tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1 REV__tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.79248046875 2 548.240721 1094.46689 0.22814 0.00012507 -0.35384 -0.00019399 -0.12571 -6.8918E-05 548.2404138406613 115.79 0.31238 111.31 111.17 111.48 -4.486 12 8 2 0 0 0 0.8319 1 22844 22844 12.532 1.4171 1 511280 + 6692 25081 4017 4021 7027 7027 -0.0765660121280689 DIEGKLKPG 9 Unmodified _DIEGKLKPG_ 0 0 0 REV__AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant REV__AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73724365234375 2 478.7742 955.533846 -0.054589 -2.6136E-05 -0.35761 -0.00017122 -0.4122 -0.00019735 478.77387199197824 53.096 0.45104 50.001 49.724 50.175 -3.0954 14 12 2 0 0 0 0.50943 1 9838 9838 1.2148 0 1 324900 + 6693 12987 4018 4022 7028 7028 0.054300540689382615 DIEKLNQAL 9 Unmodified _DIEKLNQAL_ 0 0 0 ENST00000580676.1_1_17:26905530-26906263:-|nuORF;ENSG00000076382|ENST00000321765|SPAG5 ENST00000580676.1_1_17:26905530-26906263:-|nuORF ENST00000580676.1_1_17:26905530-26906263:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2706298828125 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 154.21 1 149.44 148.94 149.94 -4.7684 0 0 0 0.23508 1 30649 30649 7.2892 0 1 6694 1539 4019 4023 7029 7029 0.04629421752088092 DIEQNLLQV 9 Unmodified _DIEQNLLQV_ 0 0 0 REV__ENSG00000102221|ENST00000614628|JADE3 REV__ENSG00000102221|ENST00000614628|JADE3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5486755371094 3 357.860873 1070.56079 NaN NaN NaN NaN NaN NaN NaN 96.217 1 96.217 95.717 96.717 0 0 0 0 0.23508 1 18850 18850 4.897 0.36815 1 + 6695 14828 4020 4024 7030 7030 0.028331178894632103 DIESVITFY 9 Unmodified _DIESVITFY_ 0 0 0 ENST00000484231.1_1_3:99998514-100002656:+|nuORF;TBC1D23|p.A351Ifs*23|1|0.05|ENSG00000036054|chr3:100299289-100299290|-/ATTCACA|frameshift_variant;ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23 ENST00000484231.1_1_3:99998514-100002656:+|nuORF ENST00000484231.1_1_3:99998514-100002656:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7798461914062 2 543.771322 1085.52809 NaN NaN NaN NaN NaN NaN NaN 151.54 1 146.79 146.29 147.29 -4.7523 0 0 0 0.23508 1 30107 30107 7.2892 0.56607 1 6696 1170 4021 4025 7031 7031 -0.011250892333919182 DIFDRELKQP 10 Unmodified _DIFDRELKQP_ 0 0 0 tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1 tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1 tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.77880859375 2 630.832777 1259.651 NaN NaN NaN NaN NaN NaN NaN 150.97 1 145.74 145.24 146.24 -5.2365 0 0 0 0.22588 1 29260 29260 9.3831 0 1 6697 26319 4022 4026 7032 7032 0.031561672178895606 DIFENQGFFQ 10 Unmodified _DIFENQGFFQ_ 0 0 0 ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK;ENST00000493544.1_1_2:242054361-242072488:-|nuORF;nc|ENSG00000115687|Q96RG2-4|PASK ENSG00000115687|ENST00000234040|PASK ENSG00000115687|ENST00000234040|PASK MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7816162109375 2 622.782753 1243.55095 NaN NaN NaN NaN NaN NaN NaN 66.47 1 62.974 62.474 63.474 -3.4965 0 0 0 0.22588 1 12458 12458 12.241 0.60036 1 6698 2878 4023 4027 7033 7033 -0.06108070115897135 DIFENQGFFQ 10 Unmodified _DIFENQGFFQ_ 0 0 0 ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK;ENST00000493544.1_1_2:242054361-242072488:-|nuORF;nc|ENSG00000115687|Q96RG2-4|PASK ENSG00000115687|ENST00000234040|PASK ENSG00000115687|ENST00000234040|PASK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.779296875 2 622.782753 1243.55095 NaN NaN NaN NaN NaN NaN NaN 65.832 1 62.549 62.049 63.049 -3.2832 0 0 0 0.22543 1 12381 12381 19.362 2.249 1 6699 2878 4023 4027 7034 7034 -0.06108070115897135 DIFFKRTIKKL 11 Unmodified _DIFFKRTIKKL_ 0 0 0 tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1 tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1 tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 705.2557373046875 2 704.937379 1407.86021 NaN NaN NaN NaN NaN NaN NaN 169.88 1 164.95 164.45 165.45 -4.9295 0 0 0 0.23698 1 33564 33564 1.3295 0 1 6700 26497 4024 4028 7035 7035 0.17259035241841048 DIFRQLFR 8 Unmodified _DIFRQLFR_ 0 0 0 REV__MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant REV__MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7882690429688 2 547.808908 1093.60326 NaN NaN NaN NaN NaN NaN NaN 155.27 1 150.02 149.52 150.52 -5.2526 0 0 0 0.21486 1 30108 30108 7.9102 2.6133 1 + 6701 14939 4025 4029 7036 7036 0.06020557808369631 DIFRQLFRQFN 11 Unmodified _DIFRQLFRQFN_ 0 0 0 REV__MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant REV__MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3953857421875 2 742.393867 1482.77318 NaN NaN NaN NaN NaN NaN NaN 178.02 1 173.15 172.65 173.65 -4.8686 0 0 0 0.2367 1 35438 35438 2.9952 0 1 + 6702 14939 4026 4030 7037 7037 0.051106290201232696 DIGINSVLSY 10 Unmodified _DIGINSVLSY_ 0 0 0 CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant;nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;ENST00000398792.3_1_10:73483820-73501738:+|nuORF CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2839965820312 2 540.782222 1079.54989 0.21133 0.00011428 -0.0082375 -4.4547E-06 0.20309 0.00010983 540.7821014821556 81.443 0.44733 77.886 77.689 78.136 -3.557 21 12 2 0 0 0 0.51199 1 15935 15935 24.021 0.87215 1 1702600 6703 462 4027 4031 7038 7038 0.013297155152031337 DIHAVKELNL 10 Unmodified _DIHAVKELNL_ 0 0 0 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3311157226562 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 138.36 1 138.36 137.86 138.86 0 0 0 0 0.22588 1 27467 27467 11.495 0.67078 1 6704 1424 4028 4032 7039 7039 0.06533086051808823 DIHGGPKTVY 10 Unmodified _DIHGGPKTVY_ 0 0 0 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7825317382812 2 543.782556 1085.55056 -0.11617 -6.3173E-05 1.3246 0.00072031 1.2085 0.00065714 543.7832938090773 108.74 0.76752 104.29 103.98 104.75 -4.4518 29 21 2 0 0 0 0.4942 1 20877 20877 24.991 1.8425 1 2102700 6705 26100 4029 4033 7040 7040 0.01120554954900399 DIHLHTPVY 9 Unmodified _DIHLHTPVY_ 0 0 0 ENSG00000168828|ENST00000377981|OR13J1 ENSG00000168828|ENST00000377981|OR13J1 ENSG00000168828|ENST00000377981|OR13J1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7840576171875 2 547.785099 1093.55564 0.1074 5.8833E-05 -0.67132 -0.00036774 -0.56392 -0.00030891 548.2869918989757 88.186 0.28818 84.394 84.229 84.518 -3.7926 10 7 2 0 0 0 0.60805 1 17243 17243 12.532 0.89125 1 1096800 6706 5939 4030 4034 7041 7041 0.012608588174998658 DIHPRPPP 8 Unmodified _DIHPRPPP_ 0 0 0 ENSG00000106571|ENST00000395925|GLI3;GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant ENSG00000106571|ENST00000395925|GLI3 ENSG00000106571|ENST00000395925|GLI3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700134277344 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 102.24 1 102.24 101.74 102.74 0 0 0 0 0.21486 1 20082 20082 1.8442 0.19162 1 6707 2391 4031 4035 7042 7042 0.026003378201380656 DIHPRPPP 8 Unmodified _DIHPRPPP_ 0 0 0 ENSG00000106571|ENST00000395925|GLI3;GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant ENSG00000106571|ENST00000395925|GLI3 ENSG00000106571|ENST00000395925|GLI3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1703796386719 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 109.5 1 105.04 104.54 105.54 -4.4518 0 0 0 0.21486 1 21017 21017 1.8442 0.19162 1 6708 2391 4031 4035 7043 7043 0.026003378201380656 DIHQWVSC 8 Unmodified _DIHQWVSC_ 0 0 0 REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 494.03741455078125 2 494.221277 986.428001 NaN NaN NaN NaN NaN NaN NaN 164.62 1 159.56 159.06 160.06 -5.0648 0 0 0 0.21486 1 32114 32114 12.532 3.1841 1 + 6709 13860 4032 4036 7044 7044 -0.06575605048169564 DIHRQLVY 8 Unmodified _DIHRQLVY_ 0 0 0 TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2704467773438 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 114.9 1 114.9 114.4 115.4 0 0 0 0 0.21452 1 22606 22606 13.508 4.1248 1 6710 26515 4033 4037 7045 7045 0.03640278537386621 DIHRQLVY 8 Unmodified _DIHRQLVY_ 0 0 0 TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.266845703125 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 123.57 1 123.57 123.07 124.07 0 0 0 0 0.21452 1 24359 24359 13.508 0.46542 1 6711 26515 4033 4037 7046 7046 0.03640278537386621 DIHRQLVY 8 Unmodified _DIHRQLVY_ 0 0 0 TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2656860351562 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 123.89 1 123.89 123.39 124.39 0 0 0 0 0.21452 1 24422 24422 13.508 4.1248 1 6712 26515 4033 4037 7047 7047 0.03640278537386621 DIHRQLVY 8 Unmodified _DIHRQLVY_ 0 0 0 TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2789916992188 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 146.7 1 146.7 146.2 147.2 0 0 0 0 0.21486 1 29341 29341 8.5933 1.304 1 6713 26515 4033 4037 7048 7048 0.03640278537386621 DIHRQLVY 8 Unmodified _DIHRQLVY_ 0 0 0 TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant TRAM1|p.P194H|1|0.35|ENSG00000067167|chr8:70587166-70587166|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2808227539062 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 129.76 1 125.13 124.63 125.63 -4.6292 0 0 0 0.21486 1 25570 25570 8.5933 0.68312 1 6714 26515 4033 4037 7049 7049 0.03640278537386621 DIHVGSVDLY 10 Unmodified _DIHVGSVDLY_ 0 0 0 REV__ENST00000506157.1_1_4:2889441-2900342:+|nuORF REV__ENST00000506157.1_1_4:2889441-2900342:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.10321044921875 3 373.188989 1116.54514 -0.41131 -0.0001535 0.098405 3.6724E-05 -0.31291 -0.00011677 373.18898417065986 69.812 0.47095 69.812 69.598 70.068 0 39 12 5 0 0 0 0.91051 1 13529 13529 6.1918 0.46 1 16806000 + 6715 22486 4034 4038 7050 7050 -0.008471686275470347 DIHVGSVDLY 10 Unmodified _DIHVGSVDLY_ 0 0 0 REV__ENST00000506157.1_1_4:2889441-2900342:+|nuORF REV__ENST00000506157.1_1_4:2889441-2900342:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 373.188989 1116.54514 -0.34612 -0.00012917 0.16133 6.0205E-05 -0.18479 -6.8961E-05 373.1890186997951 73.108 0.50021 69.797 69.562 70.062 -3.3107 0.013251 0.00022379 NaN 6.1918 40 13 4 NaN NaN NaN NaN 0 NaN NaN 0 17630000 + 6716 22486 4034 4038 -0.008471686275470347 DIHVGSVDLY 10 Unmodified _DIHVGSVDLY_ 0 0 0 REV__ENST00000506157.1_1_4:2889441-2900342:+|nuORF REV__ENST00000506157.1_1_4:2889441-2900342:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 373.188989 1116.54514 0.23336 8.7089E-05 -0.50273 -0.00018761 -0.26936 -0.00010052 373.1887382777587 73.423 0.63233 69.747 69.474 70.107 -3.6764 -0.036758 -0.00051966 NaN 6.1918 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 10638000 + 6717 22486 4034 4038 -0.008471686275470347 DIHVGSVDLY 10 Unmodified _DIHVGSVDLY_ 0 0 0 REV__ENST00000506157.1_1_4:2889441-2900342:+|nuORF REV__ENST00000506157.1_1_4:2889441-2900342:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 373.188989 1116.54514 -0.31448 -0.00011736 0.042566 1.5885E-05 -0.27192 -0.00010148 373.18895874830577 73.363 0.62978 69.779 69.531 70.161 -3.5841 -0.0044096 9.0828E-05 NaN 6.1918 52 17 4 NaN NaN NaN NaN 0 NaN NaN 0 11654000 + 6718 22486 4034 4038 -0.008471686275470347 DIIPLHSTKQ 10 Unmodified _DIIPLHSTKQ_ 0 0 0 REV__COL2A1|p.R1459H|1|0.41|ENSG00000139219|chr12:47973495-47973495|C/T|missense_variant REV__COL2A1|p.R1459H|1|0.41|ENSG00000139219|chr12:47973495-47973495|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3131713867188 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 158.75 1 153.48 152.98 153.98 -5.2712 0 0 0 0.22588 1 30801 30801 10.8 1.8233 1 + 6719 13488 4035 4039 7051 7051 0.06533086051786086 DIIQHYKQFR 10 Unmodified _DIIQHYKQFR_ 0 0 0 ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;nc|ENSG00000196159|Q6V0I7-3|FAT4;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-2|FAT4 ENSG00000196159|ENST00000394329|FAT4 ENSG00000196159|ENST00000394329|FAT4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 450.1293029785156 3 449.910449 1346.70952 0.26942 0.00012121 1.8108 0.0008147 2.0802 0.00093591 450.245228161445 29.259 0.34365 29.259 29.09 29.434 0 13 9 2 0 0 0 0.91149 1 5221 5221 0.62683 0 1 494590 6720 7238 4036 4040 7052 7052 0.05003268583004683 DIKDIDVNY 9 Unmodified _DIKDIDVNY_ 0 0 0 tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1 tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1 tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7694702148438 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 128.34 1 128.34 127.84 128.84 0 0 0 0 0.23508 1 25347 25347 11.64 0 1 6721 26209 4037 4041 7053 7053 -0.01386874864465426 DIKETPQVN 9 Unmodified _DIKETPQVN_ 0 0 0 tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1 tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1 tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.257568359375 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 130.48 1 125.71 125.21 126.21 -4.7725 0 0 0 0.23508 1 25110 25110 10.074 1.4806 1 6722 26198 4038 4042 7054 7054 0.009925448553985916 DIKYKCCESGD 11 Unmodified _DIKYKCCESGD_ 0 0 0 REV__OSMR|p.N900Tfs*3|1|0.34|ENSG00000145623|chr5:38933197-38933197|A/-|frameshift_variant REV__OSMR|p.N900Tfs*3|1|0.34|ENSG00000145623|chr5:38933197-38933197|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.751220703125 2 630.765388 1259.51622 NaN NaN NaN NaN NaN NaN NaN 159.76 1 154.53 154.03 155.03 -5.2299 0 0 0 0.23379 1 31012 31012 5.2969 2.3016 1 + 6723 16843 4039 4043 7055 7055 -0.10315397310546359 DILADLLA 8 Unmodified _DILADLLA_ 0 0 0 nc|nan|A6NN90|C2orf81;ENSG00000284308|ENST00000684111|C2orf81 nc|nan|A6NN90|C2orf81 nc|nan|A6NN90|C2orf81 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4129638671875 1 843.482211 842.474934 0.39204 0.00033068 -0.031825 -2.6844E-05 0.36022 0.00030384 843.4821744835796 155.23 0.97375 149.95 149.53 150.51 -5.2854 45 26 2 0 0 0 0.2118 1 30031 30031 44.407 3.9584 1 9418200 6724 8062 4040 4044 7056 7056 0.04739577774626014 DILDREYY 8 Unmodified _DILDREYY_ 0 0 0 nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF nc|ENSG00000164078|Q04912-7|MST1R nc|ENSG00000164078|Q04912-7|MST1R MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.781982421875 2 543.758746 1085.50294 NaN NaN NaN NaN NaN NaN NaN 129.37 1 124.55 124.05 125.05 -4.817 0 0 0 0.21486 1 24835 24835 10.183 0.10947 1 6725 5504 4041 4045 7057 7057 -0.03639144035946629 DILDREYY 8 Unmodified _DILDREYY_ 0 0 0 nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF nc|ENSG00000164078|Q04912-7|MST1R nc|ENSG00000164078|Q04912-7|MST1R MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7711181640625 2 543.758746 1085.50294 NaN NaN NaN NaN NaN NaN NaN 129.43 1 124.61 124.11 125.11 -4.817 0 0 0 0.21486 1 24848 24848 10.183 1.5901 1 6726 5504 4041 4045 7058 7058 -0.03639144035946629 DILEEFQYFQL 11 Unmodified _DILEEFQYFQL_ 0 0 0 KIAA1586|p.S537Qfs*20|1|0.31|ENSG00000168116|chr6:57054105-57054105|T/-|frameshift_variant KIAA1586|p.S537Qfs*20|1|0.31|ENSG00000168116|chr6:57054105-57054105|T/-|frameshift_variant KIAA1586|p.S537Qfs*20|1|0.31|ENSG00000168116|chr6:57054105-57054105|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.786865234375 3 482.238009 1443.6922 0.159 7.6674E-05 2.1146 0.0010198 2.2736 0.0010964 482.57449102143937 61.816 0.21184 58.446 58.32 58.532 -3.3694 6 5 2 0 0 0 0.96165 1 11539 11539 0.36667 0 1 378860 6727 11995 4042 4046 7059 7059 -0.011901165333028985 DILKFLKKKK 10 Unmodified _DILKFLKKKK_ 0 0 0 ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF;ENSG00000196704|ENST00000359904|AMZ2;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2 ENST00000578175.5_1_17:66246915-66252971:+|nuORF ENST00000578175.5_1_17:66246915-66252971:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7512817382812 2 630.923741 1259.83293 NaN NaN NaN NaN NaN NaN NaN 128.98 1 128.98 128.48 129.48 0 0 0 0 0.22588 1 25473 25473 1.6526 0.32309 1 6728 7303 4043 4047 7060 7060 0.2134055170145075 DILKFLKKKK 10 Unmodified _DILKFLKKKK_ 0 0 0 ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF;ENSG00000196704|ENST00000359904|AMZ2;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2 ENST00000578175.5_1_17:66246915-66252971:+|nuORF ENST00000578175.5_1_17:66246915-66252971:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7513427734375 2 630.923741 1259.83293 NaN NaN NaN NaN NaN NaN NaN 138.28 1 133.64 133.14 134.14 -4.6413 0 0 0 0.22588 1 27301 27301 1.4819 0.28856 1 6729 7303 4043 4047 7061 7061 0.2134055170145075 DILKFLKKKK 10 Unmodified _DILKFLKKKK_ 0 0 0 ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF;ENSG00000196704|ENST00000359904|AMZ2;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2 ENST00000578175.5_1_17:66246915-66252971:+|nuORF ENST00000578175.5_1_17:66246915-66252971:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7635498046875 2 630.923741 1259.83293 NaN NaN NaN NaN NaN NaN NaN 134.48 1 129.66 129.16 130.16 -4.8175 0 0 0 2.8426 1 25890 25890 0 0 1 6730 7303 4043 4047 7062 7062 0.2134055170145075 DILKFLKKKK 10 Unmodified _DILKFLKKKK_ 0 0 0 ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF;ENSG00000196704|ENST00000359904|AMZ2;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2 ENST00000578175.5_1_17:66246915-66252971:+|nuORF ENST00000578175.5_1_17:66246915-66252971:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7576904296875 2 630.923741 1259.83293 NaN NaN NaN NaN NaN NaN NaN 177.82 1 172.92 172.42 173.42 -4.9088 0 0 0 0.22588 1 35465 35465 3.2813 0.54611 1 6731 7303 4043 4047 7063 7063 0.2134055170145075 DILKKRRER 9 Unmodified _DILKKRRER_ 0 0 0 ENST00000335712.10_2_2:60686003-60686195:-|nuORF ENST00000335712.10_2_2:60686003-60686195:-|nuORF ENST00000335712.10_2_2:60686003-60686195:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.2528381347656 3 405.254439 1212.74149 NaN NaN NaN NaN NaN NaN NaN 43.148 1 40.429 39.929 40.929 -2.7191 0 0 0 0.23508 1 8083 8083 7.1017 3.5147 1 6732 8800 4044 4048 7064 7064 0.14362681056832116 DILPGMELTP 10 Unmodified _DILPGMELTP_ 0 0 0 nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;ENSG00000148584|ENST00000373997|A1CF;nc|ENSG00000148584|Q9NQ94|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF nc|ENSG00000148584|Q9NQ94-5|A1CF nc|ENSG00000148584|Q9NQ94-5|A1CF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.782470703125 2 543.281 1084.54745 0.26052 0.00014154 -0.53178 -0.0002889 -0.27126 -0.00014737 543.280715976422 98.21 0.94145 94.078 93.429 94.37 -4.1326 43 26 2 0 0 0 0.63858 1 19316 19316 17.113 17.113 1 1832200 6733 4750 4045 4049 7065 7065 0.00855543785860391 DILSHGRYKR 10 Unmodified _DILSHGRYKR_ 0 0 0 CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7783203125 2 622.846553 1243.67855 NaN NaN NaN NaN NaN NaN NaN 123.7 1 123.7 123.2 124.2 0 0 0 0 0.22588 1 24384 24384 5.7319 0 1 6734 519 4046 4050 7066 7066 0.06646115268790709 DILSTIKLNY 10 Unmodified _DILSTIKLNY_ 0 0 0 REV__ENST00000560723.5_1_15:81605599-81615081:-|nuORF REV__ENST00000560723.5_1_15:81605599-81615081:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2557373046875 2 590.334621 1178.65469 NaN NaN NaN NaN NaN NaN NaN 120.13 1 115.61 115.11 116.11 -4.5221 0 0 0 0.22588 1 23686 23686 6.7232 0 1 + 6735 23043 4047 4051 7067 7067 0.07250836991738652 DILYECTHAD 10 Unmodified _DILYECTHAD_ 0 0 0 REV__sp|P16769|UNG_HCMVAUracil-DNAglycosylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL114PE=3SV=1 REV__sp|P16769|UNG_HCMVAUracil-DNAglycosylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL114PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2734375 2 590.252971 1178.49139 0.544 0.0003211 1.9722 0.0011641 2.5162 0.0014852 590.2523270827068 147.28 0.10574 142.6 142.51 142.61 -4.6868 4 2 2 0 0 0 0.74994 1 29217 29217 5.7319 0.43497 1 1687700 + 6736 24699 4048 4052 7068 7068 -0.0907170912159927 DIMFIVDIL 9 Unmodified _DIMFIVDIL_ 0 0 0 nc|ENSG00000055118|Q12809-6|KCNH2;ENST00000461280.1_1_7:150646989-150652738:-|nuORF;nc|ENSG00000055118|Q12809-5|KCNH2;ENST00000473610.5_1_7:150648470-150652738:-|nuORF;nc|ENSG00000055118|Q12809-2|KCNH2;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2 nc|ENSG00000055118|Q12809-6|KCNH2 nc|ENSG00000055118|Q12809-6|KCNH2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015686035156 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 80.028 1 76.518 76.018 77.018 -3.5102 0 0 0 0.23508 1 15628 15628 2.7352 0.23671 1 6737 10068 4049 4053 7069 7069 0.04233322170921383 DIMRCWVR 8 Unmodified _DIMRCWVR_ 0 0 0 ENST00000585435.5_1_19:13218480-13220441:-|nuORF ENST00000585435.5_1_19:13218480-13220441:-|nuORF ENST00000585435.5_1_19:13218480-13220441:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21197509765625 3 360.181006 1077.52119 NaN NaN NaN NaN NaN NaN NaN 13.965 1 12.755 12.255 13.255 -1.2106 0 0 0 0.2396 1 1812 1812 0.0082765 0 1 6738 11533 4050 4054 7070 7070 -0.014470038665876928 DIMRKFLY 8 Unmodified _DIMRKFLY_ 0 0 0 REV__sp|P06473|GB_HCMVAEnvelopeglycoproteinBOS=Humancytomegalovirus(strainAD169)OX=10360GN=gBPE=1SV=1 REV__sp|P06473|GB_HCMVAEnvelopeglycoproteinBOS=Humancytomegalovirus(strainAD169)OX=10360GN=gBPE=1SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7725830078125 2 543.294245 1084.57394 0.32652 0.0001774 -1.0615 -0.00057672 -0.73501 -0.00039933 543.7936465273782 118.32 0.60553 118.32 117.86 118.47 0 28 16 3 0 0 0 0.56049 1 23322 23322 24.674 8.8267 1 2885300 + 6739 24681 4051 4055 7071 7071 0.035032774678711576 DIMSLPGWSSG 11 Unmodified _DIMSLPGWSSG_ 0 0 0 REV__ENST00000383808.6_1_3:10048968-10049073:-|nuORF REV__ENST00000383808.6_1_3:10048968-10049073:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3124389648438 2 575.265881 1148.51721 0.16547 9.5191E-05 -0.31805 -0.00018297 -0.15258 -8.7775E-05 575.2661018605876 82.563 0.78763 78.689 78.332 79.119 -3.8736 44 22 3 0 0 0 0.74417 1 15665 15665 8.7454 0.83525 1 1801600 + 6740 21185 4052 4056 7072 7072 -0.051108148792991415 DINGKVQTIV 10 Unmodified _DINGKVQTIV_ 0 0 0 ENSG00000136492|ENST00000259008|BRIP1;nc|ENSG00000136492|Q9BX63-2|BRIP1 ENSG00000136492|ENST00000259008|BRIP1 ENSG00000136492|ENST00000259008|BRIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7725830078125 2 543.811313 1085.60807 0.32603 0.0001773 -3.0947 -0.001683 -2.7687 -0.0015057 544.3091889675917 118.35 0.17273 118.35 118.29 118.47 0 6 4 2 0 0 0 0.83236 1 23322 23322 22.658 7.4096 1 1967300 6741 4015 4053 4057 7073 7073 0.06869397160448898 DINIVRSY 8 Unmodified _DINIVRSY_ 0 0 0 REV__nc|ENSG00000118058|Q03164-2|KMT2A REV__nc|ENSG00000118058|Q03164-2|KMT2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2652893066406 2 490.263999 978.513445 0.37748 0.00018506 0.58669 0.00028763 0.96416 0.00047269 490.264405409272 102.73 0.90856 98.413 98.045 98.954 -4.3208 30 25 2 0 0 0 8448 1 19684 19684 0.62683 0.50396 1 1115300 + 6742 15538 4054 4058 7074 7074 0.023328834091330464 DINLPPIELQ 10 Unmodified _DINLPPIELQ_ 0 0 0 tr|U7SRE4|U7SRE4_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01569PE=3SV=1 tr|U7SRE4|U7SRE4_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01569PE=3SV=1 tr|U7SRE4|U7SRE4_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01569PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.319580078125 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 153.38 1 153.38 152.88 153.88 0 0 0 0 0.22588 1 30731 30731 8.1555 0 1 6743 26078 4055 4059 7075 7075 0.05410263957674033 DIPARYLRKL 10 Unmodified _DIPARYLRKL_ 0 0 0 REV__nc|ENSG00000119523|Q9H553-2|ALG2 REV__nc|ENSG00000119523|Q9H553-2|ALG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.2436828613281 3 415.587307 1243.74009 -0.24226 -0.00010068 0.26969 0.00011208 0.027431 1.14E-05 415.587398013982 59.577 1.0091 56.353 55.843 56.852 -3.2237 88 28 4 0 0 0 1.128 1 11077 11077 0.20733 0.19406 1 9564200 + 6744 15583 4056 4060 7076 7076 0.12797046968080394 DIPDLEHGW 9 Unmodified _DIPDLEHGW_ 0 0 0 CFH|p.E696D|1|0.21|ENSG00000000971|chr1:196726792-196726792|A/C|missense_variant CFH|p.E696D|1|0.21|ENSG00000000971|chr1:196726792-196726792|A/C|missense_variant CFH|p.E696D|1|0.21|ENSG00000000971|chr1:196726792-196726792|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2683715820312 2 541.251089 1080.48762 NaN NaN NaN NaN NaN NaN NaN 159.98 1 155.18 154.68 155.68 -4.7952 0 0 0 0.23508 1 31810 31810 7.2892 2.5332 1 6745 504 4057 4061 7077 7077 -0.04940010833138331 DIPEWRRD 8 Unmodified _DIPEWRRD_ 0 0 0 nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;ENST00000478809.2_1_10:108360440-108378027:-|nuORF nc|ENSG00000108018|Q8WY21-4|SORCS1 nc|ENSG00000108018|Q8WY21-4|SORCS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79150390625 2 543.76998 1085.52541 NaN NaN NaN NaN NaN NaN NaN 171.4 1 166.52 166.02 167.02 -4.873 0 0 0 0.21486 1 33966 33966 7.9102 0 1 6746 2453 4058 4062 7078 7078 -0.013934998476770488 DIPLLFETKK 10 Unmodified _DIPLLFETKK_ 0 0 0 ENSG00000172992|ENST00000651974|DCAKD ENSG00000172992|ENST00000651974|DCAKD ENSG00000172992|ENST00000651974|DCAKD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2909545898438 2 602.352814 1202.69108 NaN NaN NaN NaN NaN NaN NaN 154.32 1 154.32 153.82 154.82 0 0 0 0 0.22588 1 30929 30929 9.3831 0 1 6747 6258 4059 4063 7079 7079 0.09783713888441525 DIPQSTEQY 9 Unmodified _DIPQSTEQY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant;nc|ENSG00000115524|O75533-2|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.262939453125 2 540.745836 1079.47712 0.23614 0.00012769 0.2344 0.00012675 0.47054 0.00025445 540.7459859963267 96.417 0.7246 96.417 96.011 96.736 0 31 20 2 0 0 0 0.5059 1 18940 18940 19.257 2.3147 1 2701900 6748 2862 4060 4064 7080 7080 -0.05944038278221342 DIPYSDWCEQ 10 Unmodified _DIPYSDWCEQ_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 628.2962036132812 2 628.250428 1254.4863 NaN NaN NaN NaN NaN NaN NaN 171.27 1 166.4 165.9 166.9 -4.873 0 0 0 0.22588 1 33936 33936 3.5965 0.31518 1 6749 5534 4061 4065 7081 7081 -0.13076012984220142 DIQKKAIKK 9 Unmodified _DIQKKAIKK_ 0 0 0 ENST00000475065.5_1_7:102953018-102963086:-|nuORF;nc|ENSG00000105821|Q99543-2|DNAJC2;ENSG00000105821|ENST00000379263|DNAJC2 ENST00000475065.5_1_7:102953018-102963086:-|nuORF ENST00000475065.5_1_7:102953018-102963086:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5606689453125 3 357.901003 1070.68118 -0.48345 -0.00017303 0.40504 0.00014496 -0.078411 -2.8063E-05 357.90111152845856 89.193 0.45499 85.443 85.201 85.656 -3.7501 17 12 2 0 0 0 0.87609 1 17032 17032 2.2828 0 1 989090 6750 2345 4062 4066 7082 7082 0.1486657067375745 DIQRPQIKEWR 11 Unmodified _DIQRPQIKEWR_ 0 0 0 REV__ENSG00000150637|ENST00000582621|CD226 REV__ENSG00000150637|ENST00000582621|CD226 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2698669433594 3 490.272158 1467.79465 NaN NaN NaN NaN NaN NaN NaN 143.76 1 143.76 143.26 144.26 0 0 0 0 0.22632 1 28696 28696 0.172 0 1 + 6751 17037 4063 4067 7083 7083 0.07946014048843608 DIQRPQIKEWR 11 Unmodified _DIQRPQIKEWR_ 0 0 0 REV__ENSG00000150637|ENST00000582621|CD226 REV__ENSG00000150637|ENST00000582621|CD226 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2702331542969 3 490.272158 1467.79465 NaN NaN NaN NaN NaN NaN NaN 152.42 1 152.42 151.92 152.92 0 0 0 0 0.22632 1 30529 30529 0.026206 0 1 + 6752 17037 4063 4067 7084 7084 0.07946014048843608 DIQRPQIKEWR 11 Unmodified _DIQRPQIKEWR_ 0 0 0 REV__ENSG00000150637|ENST00000582621|CD226 REV__ENSG00000150637|ENST00000582621|CD226 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2694396972656 3 490.272158 1467.79465 NaN NaN NaN NaN NaN NaN NaN 146.33 1 141.21 140.71 141.71 -5.1108 0 0 0 0.22632 1 28296 28296 0.026206 0 1 + 6753 17037 4063 4067 7085 7085 0.07946014048843608 DIQRPQIKEWR 11 Unmodified _DIQRPQIKEWR_ 0 0 0 REV__ENSG00000150637|ENST00000582621|CD226 REV__ENSG00000150637|ENST00000582621|CD226 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27130126953125 3 490.272158 1467.79465 NaN NaN NaN NaN NaN NaN NaN 153.49 1 148.27 147.77 148.77 -5.2209 0 0 0 0.22632 1 29749 29749 0.026206 0 1 + 6754 17037 4063 4067 7086 7086 0.07946014048843608 DIQTLVAN 8 Unmodified _DIQTLVAN_ 0 0 0 REV__ENST00000512024.5_1_5:893053-908577:+|nuORF REV__ENST00000512024.5_1_5:893053-908577:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23577880859375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 64.001 1 60.745 60.245 61.245 -3.2567 0 0 0 0.14659 1 12009 12009 37.974 3.8716 1 + 6755 14272 4064 4068 7087 7087 0.019015056264720442 DIRADIDKKY 10 Unmodified _DIRADIDKKY_ 0 0 0 ENST00000472564.1_1_13:113960786-113974926:+|nuORF;ENSG00000185896|ENST00000332556|LAMP1 ENST00000472564.1_1_13:113960786-113974926:+|nuORF ENST00000472564.1_1_13:113960786-113974926:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.170166015625 4 309.920027 1235.651 -0.53195 -0.00016486 0.85554 0.00026515 0.3236 0.00010029 309.92060570458926 18.774 0.44766 18.774 18.548 18.996 0 22 12 3 0 0 0 0.75917 1 3011 3011 2.8433 1.3882 1 929720 6756 7017 4065 4069 7088 7088 0.04260167217898925 DIRATRTQTPG 11 Unmodified _DIRATRTQTPG_ 0 0 0 ENST00000593960.5_1_19:58859125-58865114:+|nuORF ENST00000593960.5_1_19:58859125-58865114:+|nuORF ENST00000593960.5_1_19:58859125-58865114:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 406.25244140625 3 405.886192 1214.63675 -0.27915 -0.0001133 0.29649 0.00012034 0.017339 7.0378E-06 406.22061223729094 43.352 0.68103 40.633 40.196 40.877 -2.7191 40 18 3 0 0 0 0.806 1 8062 8062 2.8433 0.21205 1 3909800 6757 11649 4066 4070 7089 7089 0.038015147896203416 DIREGRWY 8 Unmodified _DIREGRWY_ 0 0 0 REV__ENST00000510189.5_1_4:68359569-68411187:-|nuORF REV__ENST00000510189.5_1_4:68359569-68411187:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7794799804688 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 145.46 1 140.52 140.02 141.02 -4.9445 0 0 0 0.21486 1 28123 28123 8.5933 0 1 + 6758 16829 4067 4071 7090 7090 -0.012531959850548446 DIRNTYCSA 9 Unmodified _DIRNTYCSA_ 0 0 0 ENSG00000135801|ENST00000258281|TAF5L ENSG00000135801|ENST00000258281|TAF5L ENSG00000135801|ENST00000258281|TAF5L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2810668945312 2 521.734748 1041.45494 0.51418 0.00026827 -1.6768 -0.00087485 -1.1626 -0.00060659 521.7339299651968 117.1 0.60713 112.74 112.48 113.09 -4.3585 19 16 2 0 0 0 0.69192 1 22518 22518 26.884 3.7352 1 1071900 6759 3953 4068 4072 7091 7091 -0.06412541227632573 DIRRGGIPVL 10 Unmodified _DIRRGGIPVL_ 0 0 0 ENST00000544208.1_1_9:37522456-37525129:-|nuORF;ENST00000543968.5_1_9:37521875-37532049:-|nuORF;nc|ENSG00000147912|Q9UK96-2|FBXO10;ENST00000541804.1_1_9:37512546-37588833:-|nuORF;ENSG00000147912|ENST00000432825|FBXO10 ENST00000544208.1_1_9:37522456-37525129:-|nuORF ENST00000544208.1_1_9:37522456-37525129:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7820434570312 2 548.33529 1094.65603 0.11142 6.1093E-05 -1.3996 -0.00076747 -1.2882 -0.00070638 548.3329723367355 141.19 0.17633 136.2 136.06 136.24 -4.9877 5 4 2 0 0 0 0.88533 1 27188 27188 5.2969 0.066215 1 1019400 6760 4724 4069 4073 7092 7092 0.11248515871170639 DIRWGIRY 8 Unmodified _DIRWGIRY_ 0 0 0 ENST00000484452.1_1_7:108206198-108210073:-|nuORF;THAP5|p.F275Lfs*37|1|0.13|ENSG00000177683|chr7:108564554-108564554|A/-|frameshift_variant;nc|ENSG00000177683|Q7Z6K1-2|THAP5;ENSG00000177683|ENST00000415914|THAP5 ENST00000484452.1_1_7:108206198-108210073:-|nuORF ENST00000484452.1_1_7:108206198-108210073:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20184326171875 3 360.197931 1077.57196 -0.26025 -9.3741E-05 3.4763 0.0012521 3.216 0.0011584 360.5329958038603 82.084 0.69777 78.527 78.202 78.9 -3.557 31 19 2 0 0 0 0.72935 2 16022 16022;16075 10.074 1.3285 1 2338900 6761 6530 4070 4074 7093;7094 7093 0.03627984774266224 DISCAYSGSY 10 Unmodified _DISCAYSGSY_ 0 0 0 nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2783203125 2 533.213314 1064.41208 NaN NaN NaN NaN NaN NaN NaN 132.93 1 128.08 127.58 128.58 -4.8527 0 0 0 0.22588 1 25533 25533 6.7232 0.96273 1 6762 3140 4071 4075 7095 7095 -0.11755356075741474 DISEAMITY 9 Unmodified _DISEAMITY_ 0 0 0 EID3|p.E322D|1|0.39|ENSG00000255150|chr12:104304900-104304900|A/C|missense_variant EID3|p.E322D|1|0.39|ENSG00000255150|chr12:104304900-104304900|A/C|missense_variant EID3|p.E322D|1|0.39|ENSG00000255150|chr12:104304900-104304900|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.275390625 2 521.741708 1041.46886 0.23168 0.00012088 -0.13286 -6.932E-05 0.098821 5.1559E-05 521.7415124399259 131.15 0.59027 126.37 125.97 126.56 -4.7725 23 16 2 0 0 0 0.35443 1 25229 25229 28.487 1.6032 1 1389000 6763 925 4072 4076 7096 7096 -0.05021308519212653 DISGRDPAV 9 Unmodified _DISGRDPAV_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2362365722656 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 153.58 1 148.81 148.31 149.31 -4.7684 0 0 0 0.23508 1 30521 30521 4.756 0.81161 1 6764 5126;11929 4073 4077 7097 7097 -0.005682800046201919 DISGSLIVTA 10 Unmodified _DISGSLIVTA_ 0 0 0 REV__ENSG00000123154|ENST00000418543|WDR83 REV__ENSG00000123154|ENST00000418543|WDR83 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 488.2619934082031 2 488.27149 974.528426 NaN NaN NaN NaN NaN NaN NaN 105.67 1 101.58 101.08 102.08 -4.0913 0 0 0 2.8426 1 20329 20329 1.0651 0 1 + 6765 15720 4074 4078 7098 7098 0.04014330486484141 DISLIQQY 8 Unmodified _DISLIQQY_ 0 0 0 REV3L|p.K2887Q|1|0.31|ENSG00000009413|chr6:111311205-111311205|T/G|missense_variant REV3L|p.K2887Q|1|0.31|ENSG00000009413|chr6:111311205-111311205|T/G|missense_variant REV3L|p.K2887Q|1|0.31|ENSG00000009413|chr6:111311205-111311205|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2572326660156 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 111.79 1 111.79 111.29 112.29 0 0 0 0 0.22665 1 21993 21993 1.7423 0 1 6766 25604 4075 4079 7099 7099 0.012100613149982564 DITFNRLY 8 Unmodified _DITFNRLY_ 0 0 0 ENSG00000279012|ENST00000624187|OR51B2;ENSG00000176239|ENST00000380219|OR51B6 ENSG00000279012|ENST00000624187|OR51B2 ENSG00000279012|ENST00000624187|OR51B2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2750244140625 2 521.271824 1040.5291 -0.36719 -0.0001914 0.39862 0.00020779 0.031437 1.6387E-05 521.2719425872077 50.327 0.81243 47.446 47.045 47.857 -2.8811 72 22 4 0 0 0 0.60622 1 9594 9594 21.747 2.3076 1 21510000 6767 6456 4076 4080 7100 7100 0.010451699261921021 DITGQLGNND 10 Unmodified _DITGQLGNND_ 0 0 0 ENST00000573153.5_1_17:1964788-1969297:-|nuORF;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6;ENSG00000070366|ENST00000263073|SMG6 ENST00000573153.5_1_17:1964788-1969297:-|nuORF ENST00000573153.5_1_17:1964788-1969297:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6915283203125 2 523.741085 1045.46762 NaN NaN NaN NaN NaN NaN NaN 100.53 1 100.53 100.03 101.03 0 0 0 0 0.22559 1 19724 19724 17.113 0.1706 1 6768 1429 4077 4081 7101 7101 -0.053298065637363834 DITHTYKY 8 Unmodified _DITHTYKY_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 521.1754150390625 2 520.756007 1039.49746 -0.63447 -0.0003304 -1.1648 -0.0006066 -1.7993 -0.000937 520.7553746362474 82.289 0.61691 78.415 78.197 78.814 -3.8736 26 17 2 0 0 0 1.0147 1 15624 15624 5.2307 0.47466 1 3065700 6769 7532 4078 4082 7102 7102 -0.020708228277499074 DITHTYKY 8 Unmodified _DITHTYKY_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 520.756007 1039.49746 -0.099761 -5.1951E-05 -1.7017 -0.00088619 -1.8015 -0.00093814 520.7550583956825 82.144 0.55167 78.456 78.187 78.739 -3.6879 0.020165 -0.00034297 NaN 5.2307 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1945800 6770 7532 4078 4082 -0.020708228277499074 DITKGTQSL 9 Unmodified _DITKGTQSL_ 0 0 0 ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1 ENST00000486234.1_1_2:74754275-74754965:-|nuORF ENST00000486234.1_1_2:74754275-74754965:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77423095703125 2 481.761289 961.508025 0.25805 0.00012432 0.43878 0.00021139 0.69683 0.00033571 481.76134381630817 99.392 0.42266 99.392 99.267 99.69 0 15 11 2 0 0 0 0.24263 2 19497 19497;19532 34.932 2.6266 1 842130 6771 2845 4079 4083 7103;7104 7103 0.025731598266816036 DITKGTQSL 9 Unmodified _DITKGTQSL_ 0 0 0 ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1 ENST00000486234.1_1_2:74754275-74754965:-|nuORF ENST00000486234.1_1_2:74754275-74754965:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2438049316406 2 481.761289 961.508025 -0.066683 -3.2125E-05 0.35394 0.00017052 0.28726 0.00013839 481.76144636370134 103.38 0.67719 99.197 98.907 99.584 -4.1861 30 19 2 0 0 0 0.30909 1 20309 20309 41.956 3.78 1 1749300 6772 2845 4079 4083 7105 7105 0.025731598266816036 DITKGTQSL 9 Unmodified _DITKGTQSL_ 0 0 0 ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1 ENST00000486234.1_1_2:74754275-74754965:-|nuORF ENST00000486234.1_1_2:74754275-74754965:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2527160644531 2 481.761289 961.508025 0.54383 0.00026199 0.065764 3.1683E-05 0.60959 0.00029368 481.7611094232413 103.37 0.6292 99.319 99.069 99.698 -4.0543 22 17 2 0 0 0 0.30909 1 19861 19861 34.932 0 1 1670800 6773 2845 4079 4083 7106 7106 0.025731598266816036 DITKGTQSL 9 Unmodified _DITKGTQSL_ 0 0 0 ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1 ENST00000486234.1_1_2:74754275-74754965:-|nuORF ENST00000486234.1_1_2:74754275-74754965:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 481.761289 961.508025 0.25102 0.00012093 0.60765 0.00029274 0.85868 0.00041368 481.7613090738307 103.69 0.58257 99.347 99.036 99.619 -4.346 0.033243 0.00024034 NaN 34.932 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1663800 6774 2845 4079 4083 0.025731598266816036 DITPLRSLHQ 10 Unmodified _DITPLRSLHQ_ 0 0 0 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2531127929688 2 590.327662 1178.64077 NaN NaN NaN NaN NaN NaN NaN 166.04 1 166.04 165.54 166.54 0 0 0 0 0.17567 1 33770 33770 32.786 8.7651 1 + 6775 15100 4080 4084 7107 7107 0.058596042833414685 DITQNYKY 8 Unmodified _DITQNYKY_ 0 0 0 nc|ENSG00000166947|P16452-3|EPB42;EPB42|p.C670Sfs*10|1|0.04|ENSG00000166947|chr15:43197369-43197370|-/TATAAAGG|frameshift_variant;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42;ENST00000567019.1_1_15:43489502-43501706:-|nuORF;EPB42|p.L487Pfs*13|1|0.39|ENSG00000166947|chr15:43206488-43206489|-/G|frameshift_variant nc|ENSG00000166947|P16452-3|EPB42 nc|ENSG00000166947|P16452-3|EPB42 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2615966796875 2 522.753464 1043.49238 0.31147 0.00016282 -1.6371 -0.00085581 -1.3256 -0.00069299 522.7527255539359 139.89 0.63281 135.04 134.7 135.34 -4.8492 27 17 2 0 0 0 0.93477 1 26911 26911 12.532 2.4576 1 1617600 6776 5770 4081 4085 7108 7108 -0.027631266903881624 DIVCVAEKC 9 Unmodified _DIVCVAEKC_ 0 0 0 REV__PDPR|p.E826Kfs*5|1|0.12|ENSG00000090857|chr16:70156711-70156711|G/-|frameshift_variant REV__PDPR|p.E826Kfs*5|1|0.12|ENSG00000090857|chr16:70156711-70156711|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27386474609375 2 490.232996 978.451438 NaN NaN NaN NaN NaN NaN NaN 92.736 1 88.593 88.093 89.093 -4.1435 0 0 0 0.23277 1 17670 17670 13.906 0.39817 1 + 6777 14553 4082 4086 7109 7109 -0.03864927325867029 DIVESLGKPE 10 Unmodified _DIVESLGKPE_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78857421875 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 99.116 1 94.983 94.483 95.483 -4.1326 0 0 0 2.8426 1 19466 19466 0.84494 0.63761 1 6778 1162 4083 4087 7110 7110 0.02109698169647345 DIVKSLSRY 9 Unmodified _DIVKSLSRY_ 0 0 0 tr|U7T614|U7T614_FUSNU7,8-dihydro-8-oxoguaninetriphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00337PE=4SV=1 tr|U7T614|U7T614_FUSNU7,8-dihydro-8-oxoguaninetriphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00337PE=4SV=1 tr|U7T614|U7T614_FUSNU7,8-dihydro-8-oxoguaninetriphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00337PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2733154296875 2 540.806031 1079.59751 0.27971 0.00015127 -0.87759 -0.0004746 -0.59787 -0.00032333 540.8063823771547 114.65 0.30968 114.65 114.44 114.75 0 12 8 2 0 0 0 0.85913 1 22562 22562 3.2813 1.2216 1 3460400 6779 26484 4084 4088 7111 7111 0.060894145060501614 DIVLLRALP 9 Unmodified _DIVLLRALP_ 0 0 0 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 504.8283996582031 2 505.32386 1008.63317 0.18588 9.3927E-05 0.3482 0.00017596 0.53408 0.00026988 505.32408015290844 169.3 0.20612 164.51 164.38 164.59 -4.7898 9 5 2 0 0 0 0.38759 1 34285 34285 1.6919 0.62673 1 29199000 6780 7840 4085 4089 7112 7112 0.12919496753693238 DIVLLRALP 9 Unmodified _DIVLLRALP_ 0 0 0 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 505.32386 1008.63317 -0.10868 -5.4918E-05 0.47404 0.00023955 0.36536 0.00018463 505.32414524084345 169.45 0.27444 164.52 164.32 164.6 -4.9295 0.01215 0.00022759 NaN 4.7159 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 13510000 6781 7840 4085 4089 0.12919496753693238 DIVLLRALP 9 Unmodified _DIVLLRALP_ 0 0 0 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 505.32386 1008.63317 0.41903 0.00021175 0.015977 8.0738E-06 0.43501 0.00021982 505.32385662348514 169.37 0.20943 164.5 164.38 164.58 -4.873 -0.007937 -0.00023535 NaN 4.7159 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 19146000 6782 7840 4085 4089 0.12919496753693238 DIVLQVVK 8 Unmodified _DIVLQVVK_ 0 0 0 ASPM|p.L1016V|1|0.29|ENSG00000066279|chr1:197125082-197125082|G/C|missense_variant ASPM|p.L1016V|1|0.29|ENSG00000066279|chr1:197125082-197125082|G/C|missense_variant ASPM|p.L1016V|1|0.29|ENSG00000066279|chr1:197125082-197125082|G/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23785400390625 2 457.289485 912.564418 -0.35235 -0.00016113 0.51697 0.0002364 0.16461 7.5275E-05 457.2897381136369 111.8 0.60362 107.38 107.27 107.87 -4.4231 22 16 2 0 0 0 0.74602 1 22084 22084 10.074 0 1 1737100 6783 240 4086 4090 7113 7113 0.10463832454001931 DIVSGLSLL 9 Unmodified _DIVSGLSLL_ 0 0 0 REV__PDE2A|p.P98Hfs*53|1|0.29|ENSG00000186642|chr11:72605168-72605168|G/-|frameshift_variant REV__PDE2A|p.P98Hfs*53|1|0.29|ENSG00000186642|chr11:72605168-72605168|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2414245605469 2 458.771126 915.527698 -0.01302 -5.9734E-06 0.22437 0.00010293 0.21134 9.6959E-05 458.77115790785643 116.26 1.1478 111.78 111.31 112.46 -4.486 103 32 4 0 0 0 0.064469 1 22927 22927 67.344 18.998 1 78738000 + 6784 19044 4087 4091 7114 7114 0.06655535837444404 DIWFDFETM 9 Unmodified _DIWFDFETM_ 0 0 0 ENSG00000198960|ENST00000361910|ARMCX6 ENSG00000198960|ENST00000361910|ARMCX6 ENSG00000198960|ENST00000361910|ARMCX6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2750244140625 2 602.254982 1202.49541 NaN NaN NaN NaN NaN NaN NaN 163.47 1 158.68 158.18 159.18 -4.7898 0 0 0 0.23508 1 32586 32586 4.3292 0.73274 1 6785 7533 4088 4092 7115 7115 -0.09773619627890184 DIWKKFEL 8 Unmodified _DIWKKFEL_ 0 0 0 ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;MYCL|p.T41Rfs*69|1|0.16|ENSG00000116990|chr1:39901315-39901315|G/-|frameshift_variant;nc|ENSG00000116990|P12524-2|MYCL;ENSG00000134323|ENST00000281043|MYCN;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000204053|P12525|MYCLP1 ENSG00000116990|ENST00000372816|MYCL;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000204053|P12525|MYCLP1 MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20135498046875 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 95.941 1 95.941 95.441 96.441 0 0 0 0 0.21486 1 18791 18791 6.7232 1.8262 1 6786 2966;4060;12557 4089 4093 7116 7116 0.05019217482708882 DIWKKFEL 8 Unmodified _DIWKKFEL_ 0 0 0 ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;MYCL|p.T41Rfs*69|1|0.16|ENSG00000116990|chr1:39901315-39901315|G/-|frameshift_variant;nc|ENSG00000116990|P12524-2|MYCL;ENSG00000134323|ENST00000281043|MYCN;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000204053|P12525|MYCLP1 ENSG00000116990|ENST00000372816|MYCL;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000204053|P12525|MYCLP1 MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 99.648 1 95.515 95.015 96.015 -4.1326 0 0 0 0.21486 1 19578 19578 6.7232 1.8262 1 6787 2966;4060;12557 4089 4093 7117 7117 0.05019217482708882 DIWKKFEL 8 Unmodified _DIWKKFEL_ 0 0 0 ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;MYCL|p.T41Rfs*69|1|0.16|ENSG00000116990|chr1:39901315-39901315|G/-|frameshift_variant;nc|ENSG00000116990|P12524-2|MYCL;ENSG00000134323|ENST00000281043|MYCN;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000204053|P12525|MYCLP1 ENSG00000116990|ENST00000372816|MYCL;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000204053|P12525|MYCLP1 MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.200927734375 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 102.02 1 97.831 97.331 98.331 -4.1861 0 0 0 0.21486 1 20047 20047 3.9444 0.3479 1 6788 2966;4060;12557 4089 4093 7118 7118 0.05019217482708882 DIWKKFEL 8 Unmodified _DIWKKFEL_ 0 0 0 ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;MYCL|p.T41Rfs*69|1|0.16|ENSG00000116990|chr1:39901315-39901315|G/-|frameshift_variant;nc|ENSG00000116990|P12524-2|MYCL;ENSG00000134323|ENST00000281043|MYCN;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000204053|P12525|MYCLP1 ENSG00000116990|ENST00000372816|MYCL;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000204053|P12525|MYCLP1 MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20159912109375 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 105.77 1 101.51 101.01 102.01 -4.2638 0 0 0 0.21486 1 20819 20819 10.824 2.6684 1 6789 2966;4060;12557 4089 4093 7119 7119 0.05019217482708882 DIWKKFEL 8 Unmodified _DIWKKFEL_ 0 0 0 ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;MYCL|p.T41Rfs*69|1|0.16|ENSG00000116990|chr1:39901315-39901315|G/-|frameshift_variant;nc|ENSG00000116990|P12524-2|MYCL;ENSG00000134323|ENST00000281043|MYCN;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000204053|P12525|MYCLP1 ENSG00000116990|ENST00000372816|MYCL;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000204053|P12525|MYCLP1 MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 100.08 1 95.786 95.286 96.286 -4.297 0 0 0 0.21486 1 19137 19137 10.824 0.024421 1 6790 2966;4060;12557 4089 4093 7120 7120 0.05019217482708882 DIWKKFEL 8 Unmodified _DIWKKFEL_ 0 0 0 ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;MYCL|p.T41Rfs*69|1|0.16|ENSG00000116990|chr1:39901315-39901315|G/-|frameshift_variant;nc|ENSG00000116990|P12524-2|MYCL;ENSG00000134323|ENST00000281043|MYCN;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000204053|P12525|MYCLP1 ENSG00000116990|ENST00000372816|MYCL;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000204053|P12525|MYCLP1 MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20172119140625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 100.32 1 96.021 95.521 96.521 -4.297 0 0 0 0.21486 1 19184 19184 10.824 2.6684 1 6791 2966;4060;12557 4089 4093 7121 7121 0.05019217482708882 DIWKKFEL 8 Unmodified _DIWKKFEL_ 0 0 0 ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;MYCL|p.T41Rfs*69|1|0.16|ENSG00000116990|chr1:39901315-39901315|G/-|frameshift_variant;nc|ENSG00000116990|P12524-2|MYCL;ENSG00000134323|ENST00000281043|MYCN;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000204053|P12525|MYCLP1 ENSG00000116990|ENST00000372816|MYCL;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000204053|P12525|MYCLP1 MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2014465332031 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 99.766 1 95.809 95.309 96.309 -3.9564 0 0 0 0.21486 1 19159 19159 6.7232 1.8262 1 6792 2966;4060;12557 4089 4093 7122 7122 0.05019217482708882 DIWKKFEL 8 Unmodified _DIWKKFEL_ 0 0 0 ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;MYCL|p.T41Rfs*69|1|0.16|ENSG00000116990|chr1:39901315-39901315|G/-|frameshift_variant;nc|ENSG00000116990|P12524-2|MYCL;ENSG00000134323|ENST00000281043|MYCN;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000204053|P12525|MYCLP1 ENSG00000116990|ENST00000372816|MYCL;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000204053|P12525|MYCLP1 MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20159912109375 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 100 1 96.012 95.512 96.512 -3.9895 0 0 0 0.21486 1 19207 19207 10.824 2.6684 1 6793 2966;4060;12557 4089 4093 7123 7123 0.05019217482708882 DIWKKFEL 8 Unmodified _DIWKKFEL_ 0 0 0 ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;MYCL|p.T41Rfs*69|1|0.16|ENSG00000116990|chr1:39901315-39901315|G/-|frameshift_variant;nc|ENSG00000116990|P12524-2|MYCL;ENSG00000134323|ENST00000281043|MYCN;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000204053|P12525|MYCLP1 ENSG00000116990|ENST00000372816|MYCL;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000204053|P12525|MYCLP1 MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2381591796875 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 100.06 1 96.074 95.574 96.574 -3.9895 0 0 0 0.21486 1 19221 19221 10.824 2.6684 1 6794 2966;4060;12557 4089 4093 7124 7124 0.05019217482708882 DIWKKFEL 8 Unmodified _DIWKKFEL_ 0 0 0 ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;MYCL|p.T41Rfs*69|1|0.16|ENSG00000116990|chr1:39901315-39901315|G/-|frameshift_variant;nc|ENSG00000116990|P12524-2|MYCL;ENSG00000134323|ENST00000281043|MYCN;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000204053|P12525|MYCLP1 ENSG00000116990|ENST00000372816|MYCL;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000204053|P12525|MYCLP1 MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20159912109375 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 105.28 1 101.19 100.69 101.69 -4.0913 0 0 0 0.21486 1 20247 20247 6.7232 1.8262 1 6795 2966;4060;12557 4089 4093 7125 7125 0.05019217482708882 DIWKKFEL 8 Unmodified _DIWKKFEL_ 0 0 0 ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;MYCL|p.T41Rfs*69|1|0.16|ENSG00000116990|chr1:39901315-39901315|G/-|frameshift_variant;nc|ENSG00000116990|P12524-2|MYCL;ENSG00000134323|ENST00000281043|MYCN;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000204053|P12525|MYCLP1 ENSG00000116990|ENST00000372816|MYCL;MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000204053|P12525|MYCLP1 MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015075683594 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 105.88 1 101.79 101.29 102.29 -4.0913 0 0 0 0.21486 1 20367 20367 10.824 2.6684 1 6796 2966;4060;12557 4089 4093 7126 7126 0.05019217482708882 DIYFWRLWGPH 11 Unmodified _DIYFWRLWGPH_ 0 0 0 nc|ENSG00000186111|O60331-2|PIP5K1C nc|ENSG00000186111|O60331-2|PIP5K1C nc|ENSG00000186111|O60331-2|PIP5K1C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 497.32708740234375 3 497.250695 1488.73025 NaN NaN NaN NaN NaN NaN NaN 92.82 1 88.895 88.395 89.395 -3.9251 0 0 0 0.22632 1 18182 18182 0.00056442 0 1 6797 12519 4090 4094 7127 7127 0.0054385896269195655 DIYPLNKIID 10 Unmodified _DIYPLNKIID_ 0 0 0 REV__tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1 REV__tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2960815429688 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 154.58 1 154.58 154.08 155.08 0 0 0 0 0.22588 1 30981 30981 9.3831 1.2276 1 + 6798 24852 4091 4095 7128 7128 0.06146836991774762 DIYRMSFY 8 Unmodified _DIYRMSFY_ 0 0 0 REV__ARG2|p.D221Y|1|0.32|ENSG00000081181|chr14:67646964-67646964|G/T|missense_variant REV__ARG2|p.D221Y|1|0.32|ENSG00000081181|chr14:67646964-67646964|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7799072265625 2 547.75241 1093.49027 NaN NaN NaN NaN NaN NaN NaN 54.219 1 54.219 53.719 54.719 0 0 0 0 0.21486 1 10336 10336 9.3474 1.4373 1 + 6799 13095 4092 4096 7129 7129 -0.05273878699836132 DIYRMSFY 8 Unmodified _DIYRMSFY_ 0 0 0 REV__ARG2|p.D221Y|1|0.32|ENSG00000081181|chr14:67646964-67646964|G/T|missense_variant REV__ARG2|p.D221Y|1|0.32|ENSG00000081181|chr14:67646964-67646964|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7811279296875 2 547.75241 1093.49027 0.44514 0.00024383 -4.4339 -0.0024287 -3.9888 -0.0021849 548.2496169688403 120.88 0.21128 116.36 116.17 116.38 -4.5221 8 5 2 0 0 0 1.0147 1 23827 23827 2.3027 0 1 1302900 + 6800 13095 4092 4096 7130 7130 -0.05273878699836132 DIYRMSFY 8 Unmodified _DIYRMSFY_ 0 0 0 REV__ARG2|p.D221Y|1|0.32|ENSG00000081181|chr14:67646964-67646964|G/T|missense_variant REV__ARG2|p.D221Y|1|0.32|ENSG00000081181|chr14:67646964-67646964|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.769287109375 2 547.75241 1093.49027 NaN NaN NaN NaN NaN NaN NaN 146.76 1 141.65 141.15 142.15 -5.1108 0 0 0 0.21486 1 28388 28388 8.5933 0.68312 1 + 6801 13095 4092 4096 7131 7131 -0.05273878699836132 DIYSTLQNI 9 Unmodified _DIYSTLQNI_ 0 0 0 REV__PXDN|p.N1194Tfs*8|1|0.25|ENSG00000130508|chr2:1648199-1648199|T/-|frameshift_variant REV__PXDN|p.N1194Tfs*8|1|0.25|ENSG00000130508|chr2:1648199-1648199|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2704467773438 2 533.774396 1065.53424 0.25883 0.00013816 -1.2418 -0.00066283 -0.98295 -0.00052467 533.7740349857775 111.38 0.52676 106.89 106.61 107.14 -4.4915 20 14 2 0 0 0 0.79204 1 21331 21331 3.9444 0 1 2207200 + 6802 16008 4093 4097 7132 7132 0.004094289981367183 DKAFNYSSY 9 Unmodified _DKAFNYSSY_ 0 0 0 ENSG00000277462|ENST00000366503|ZNF670 ENSG00000277462|ENST00000366503|ZNF670 ENSG00000277462|ENST00000366503|ZNF670 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.770263671875 2 547.743096 1093.47164 NaN NaN NaN NaN NaN NaN NaN 154.02 1 148.8 148.3 149.3 -5.2209 0 0 0 0.23508 1 29856 29856 7.9102 0 1 6803 8037 4094 4098 7133 7133 -0.07135717070036662 DKAFRRDSHL 10 Unmodified _DKAFRRDSHL_ 0 0 0 ENSG00000167562|ENST00000391785|ZNF701;nc|ENSG00000167562|Q9NV72|ZNF701;nc|ENSG00000198538|P17035-2|ZNF28;ENSG00000213793|ENST00000638862|ZNF888;ENSG00000198538|ENST00000457749|ZNF28 ENSG00000167562|ENST00000391785|ZNF701 ENSG00000167562|ENST00000391785|ZNF701 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7692260742188 2 622.82836 1243.64217 NaN NaN NaN NaN NaN NaN NaN 172.51 1 167.61 167.11 168.11 -4.8977 0 0 0 0.22588 1 34216 34216 11.495 4.393 1 6804 5818 4095 4099 7134 7134 0.03009238372078471 DKALNALNNL 10 Unmodified _DKALNALNNL_ 0 0 0 ENST00000313754.4_1_3:94225612-94226386:-|nuORF ENST00000313754.4_1_3:94225612-94226386:-|nuORF ENST00000313754.4_1_3:94225612-94226386:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7859497070312 2 543.301113 1084.58767 0.33471 0.00018185 1.589 0.0008633 1.9237 0.0010452 543.8018411863658 131.79 0.31259 131.79 131.61 131.92 0 10 8 2 0 0 0 0.88998 1 26060 26060 16.149 7.9936 1 1259900 6805 8665 4096 4100 7135 7135 0.04876226500641678 DKARQRTQKN 10 Unmodified _DKARQRTQKN_ 0 0 0 REV__ENST00000369626.7_1_1:113498661-113498787:-|nuORF REV__ENST00000369626.7_1_1:113498661-113498787:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7523803710938 2 622.844542 1243.67453 NaN NaN NaN NaN NaN NaN NaN 147.77 1 143.06 142.56 143.56 -4.7095 0 0 0 0.22588 1 29333 29333 10.8 0.64894 1 + 6806 20964 4097 4101 7136 7136 0.06244025775094997 DKAVVPRSPL 10 Unmodified _DKAVVPRSPL_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2711791992188 2 541.321848 1080.62914 NaN NaN NaN NaN NaN NaN NaN 160.31 1 155.52 155.02 156.02 -4.7952 0 0 0 0.22588 1 31880 31880 8.1555 0.24537 1 + 6807 17221 4098 4102 7137 7137 0.09205407259992171 DKCCNWCDQM 10 Unmodified _DKCCNWCDQM_ 0 0 0 REV__nc|ENSG00000159625|Q8IY82-2|DRC7 REV__nc|ENSG00000159625|Q8IY82-2|DRC7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7588500976562 2 623.211411 1244.40827 NaN NaN NaN NaN NaN NaN NaN 74.794 1 74.794 74.294 75.294 0 0 0 0 0.22588 1 14523 14523 1.4819 0 1 + 6808 17378 4099 4103 7138 7138 -0.2041580843713291 DKCEVETLDQ 10 Unmodified _DKCEVETLDQ_ 0 0 0 ATG2A|p.L1176Q|1|0.4|ENSG00000110046|chr11:64903598-64903598|A/T|missense_variant ATG2A|p.L1176Q|1|0.4|ENSG00000110046|chr11:64903598-64903598|A/T|missense_variant ATG2A|p.L1176Q|1|0.4|ENSG00000110046|chr11:64903598-64903598|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2615356445312 2 590.263536 1178.51252 0.50744 0.00029952 -0.14048 -8.292E-05 0.36696 0.0002166 590.2635423251502 142.12 0.20251 137.47 137.38 137.58 -4.6493 6 5 2 0 0 0 0.72406 1 28091 28091 8.7454 0 1 1613600 6809 250 4100 4104 7139 7139 -0.06959743812740271 DKCEYHREG 9 Unmodified _DKCEYHREG_ 0 0 0 REV__nc|ENSG00000147124|P51814-4|ZNF41 REV__nc|ENSG00000147124|P51814-4|ZNF41 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 569.0218505859375 2 568.743105 1135.47166 0.51324 0.0002919 0.45694 0.00025988 0.97018 0.00055178 569.2450058736233 166.25 0.19931 161.3 161.18 161.38 -4.9484 7 5 2 0 0 0 0.79204 1 32529 32529 7.2892 1.0834 1 56868000 + 6810 16919 4101 4105 7140 7140 -0.09066040341690496 DKCMQDHDC 9 Unmodified _DKCMQDHDC_ 0 0 0 ENST00000379061.8_1_17:26712241-26725107:+|nuORF;nc|ENSG00000004139|Q6SZW1-2|SARM1;ENSG00000004139|ENST00000585482|SARM1 ENST00000379061.8_1_17:26712241-26725107:+|nuORF ENST00000379061.8_1_17:26712241-26725107:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7880249023438 2 547.688626 1093.3627 0.42927 0.00023511 1.7744 0.00097181 2.2037 0.0012069 547.6896697625784 150.28 0.21272 145.16 145 145.21 -5.1204 6 5 2 0 0 0 0.87974 1 29093 29093 1.8442 0 1 652870 6811 971 4102 4106 7141 7141 -0.18024710627832974 DKCQDCEPEL 10 Unmodified _DKCQDCEPEL_ 0 0 0 REV__ENSG00000106780|ENST00000373930|MEGF9 REV__ENSG00000106780|ENST00000373930|MEGF9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2584228515625 2 590.236464 1178.45837 NaN NaN NaN NaN NaN NaN NaN 152.26 1 147.09 146.59 147.59 -5.1759 0 0 0 0.22588 1 29509 29509 5.7319 0.97584 1 + 6812 15063 4103 4107 7142 7142 -0.12371659235964216 DKCQYPAEE 9 Unmodified _DKCQYPAEE_ 0 0 0 REV__ENSG00000166529|ENST00000292450|ZSCAN21 REV__ENSG00000166529|ENST00000292450|ZSCAN21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2579956054688 2 541.726589 1081.43863 0.3266 0.00017693 1.0235 0.00055443 1.3501 0.00073136 542.2289096273797 155.44 0.13806 155.44 155.35 155.49 0 5 3 2 0 0 0 0.87511 1 31161 31161 1.6526 0 1 2636100 + 6813 17858 4104 4108 7143 7143 -0.09883667184408296 DKCSCVSCRDE 11 Unmodified _DKCSCVSCRDE_ 0 0 0 REV__nc|ENSG00000165973|Q92832-2|NELL1 REV__nc|ENSG00000165973|Q92832-2|NELL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7813110351562 2 622.738847 1243.46314 NaN NaN NaN NaN NaN NaN NaN 170.94 1 166.02 165.52 166.52 -4.9149 0 0 0 0.23698 1 33819 33819 2.4985 0.43874 1 + 6814 17814 4105 4109 7144 7144 -0.1488509836481171 DKDAQFYCE 9 Unmodified _DKDAQFYCE_ 0 0 0 ENSG00000076706|ENST00000264036|MCAM;nc|ENSG00000076706|P43121-2|MCAM;ENST00000528533.5_1_11:119181936-119187838:-|nuORF ENSG00000076706|ENST00000264036|MCAM ENSG00000076706|ENST00000264036|MCAM MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 560.0927734375 2 559.726589 1117.43863 NaN NaN NaN NaN NaN NaN NaN 167.77 1 167.77 167.27 168.27 0 0 0 0 0.22621 1 34308 34308 15.847 1.0089 1 6815 1543 4106 4110 7145 7145 -0.11539667184410973 DKDEDQVHII 10 Unmodified _DKDEDQVHII_ 0 0 0 ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1 ENST00000472190.5_1_1:233765551-233807273:+|nuORF ENST00000472190.5_1_1:233765551-233807273:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 605.7896118164062 2 606.298767 1210.58298 0.40198 0.00024372 1.074 0.00065117 1.476 0.00089489 606.7988129009644 166 0.097656 166 165.94 166.03 0 4 2 2 0 0 0 0.90091 1 33760 33760 6.2058 3.2105 1 19025000 6816 3949 4107 4111 7146 7146 -0.013887024327459585 DKDEEHEDEV 10 Unmodified _DKDEEHEDEV_ 0 0 0 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7529907226562 2 622.749304 1243.48405 NaN NaN NaN NaN NaN NaN NaN 152.35 1 147.6 147.1 148.1 -4.7523 0 0 0 0.22588 1 30272 30272 5.7319 1.4026 1 6817 1132 4108 4112 7147 7147 -0.1279477018833859 DKDEEQTEW 9 Unmodified _DKDEEQTEW_ 0 0 0 REV__nc|ENSG00000142186|Q96KG9-2|SCYL1 REV__nc|ENSG00000142186|Q96KG9-2|SCYL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2646484375 2 590.243657 1178.47276 NaN NaN NaN NaN NaN NaN NaN 137.88 1 137.88 137.38 138.38 0 0 0 0 0.23508 1 27360 27360 4.3292 0 1 + 6818 16658 4109 4113 7148 7148 -0.10933547491822537 DKDGKFQML 9 Unmodified _DKDGKFQML_ 0 0 0 DENND5A|p.G1213D|1|0.18|ENSG00000184014|chr11:9141982-9141982|C/T|missense_variant DENND5A|p.G1213D|1|0.18|ENSG00000184014|chr11:9141982-9141982|C/T|missense_variant DENND5A|p.G1213D|1|0.18|ENSG00000184014|chr11:9141982-9141982|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26513671875 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 138.4 1 133.56 133.06 134.06 -4.84 0 0 0 0.23508 1 26671 26671 10.074 2.1638 1 6819 817 4110 4114 7149 7149 -0.00966207154078802 DKDIPAAILFT 11 Unmodified _DKDIPAAILFT_ 0 0 0 ENSG00000232382|ENST00000642057|OR5K1 ENSG00000232382|ENST00000642057|OR5K1 ENSG00000232382|ENST00000642057|OR5K1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2993774414062 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 134.17 1 134.17 133.67 134.67 0 0 0 0 0.23018 1 26553 26553 8.1555 0.54658 1 6820 7812 4111 4115 7150 7150 0.06146836991752025 DKDKWMSFFG 10 Unmodified _DKDKWMSFFG_ 0 0 0 REV__ENST00000263168.3_1_1:113212757-113212823:+|nuORF REV__ENST00000263168.3_1_1:113212757-113212823:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7611083984375 2 630.789524 1259.56449 NaN NaN NaN NaN NaN NaN NaN 170.56 1 170.56 170.06 171.06 0 0 0 0 0.22588 1 35073 35073 6.7232 0.51738 1 + 6821 20204 4112 4116 7151 7151 -0.054905356083509105 DKDKWMSFFG 10 Unmodified _DKDKWMSFFG_ 0 0 0 REV__ENST00000263168.3_1_1:113212757-113212823:+|nuORF REV__ENST00000263168.3_1_1:113212757-113212823:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.763427734375 2 630.789524 1259.56449 0.3137 0.00019788 0.091192 5.7523E-05 0.40489 0.0002554 630.7893535518511 139.8 0.20869 134.85 134.67 134.88 -4.952 6 5 2 0 0 0 0.744 1 26881 26881 6.7232 0.99131 1 1047700 + 6822 20204 4112 4116 7152 7152 -0.054905356083509105 DKDLVIMNV 9 Unmodified _DKDLVIMNV_ 0 0 0 REV__ENST00000479534.5_1_1:17395541-17401618:-|nuORF REV__ENST00000479534.5_1_1:17395541-17401618:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6807861328125 2 523.781167 1045.54778 -0.027358 -1.433E-05 2.7723 0.0014521 2.7449 0.0014377 523.7824850203413 156.61 0.13994 151.83 151.77 151.91 -4.7885 5 3 2 0 0 0 0.31673 1 31135 31135 39.95 20.693 1 1463700 + 6823 15513 4113 4117 7153 7153 0.026829635057310952 DKDQLIERPM 10 Unmodified _DKDQLIERPM_ 0 0 0 REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7797241210938 2 622.818812 1243.62307 NaN NaN NaN NaN NaN NaN NaN 163.38 1 158.33 157.83 158.83 -5.0446 0 0 0 0.22588 1 31790 31790 6.2058 0 1 + 6824 17751 4114 4118 7154 7154 0.011005209661561821 DKDQPQRLS 9 Unmodified _DKDQPQRLS_ 0 0 0 REV__LONP1|p.R786Q|1|0.26|ENSG00000196365|chr19:5693733-5693733|C/T|missense_variant REV__LONP1|p.R786Q|1|0.26|ENSG00000196365|chr19:5693733-5693733|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7951049804688 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 145.01 1 139.94 139.44 140.44 -5.0671 0 0 0 0.23508 1 28001 28001 11.495 2.1116 1 + 6825 23803 4115 4119 7155 7155 0.0071846546118194965 DKDRRLLLSLL 11 Unmodified _DKDRRLLLSLL_ 0 0 0 ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 671.62744140625 2 671.414269 1340.81398 NaN NaN NaN NaN NaN NaN NaN 168.66 1 168.66 168.16 169.16 0 0 0 0 0.22632 1 34563 34563 0.0059557 0 1 6826 5169 4116 4120 7156 7156 0.15720970339771156 DKDTQTLKF 9 Unmodified _DKDTQTLKF_ 0 0 0 REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|46|2|sense REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|46|2|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7711791992188 2 548.287671 1094.56079 0.51455 0.00028212 -0.044852 -2.4592E-05 0.46969 0.00025753 548.7886109564607 159.92 0.14563 154.67 154.54 154.68 -5.2526 5 3 2 0 0 0 0.77734 1 31020 31020 9.3831 7.7305 1 1235900 + 6827 23780 4117 4121 7157 7157 0.017291178894765835 DKEDKWCY 8 Unmodified _DKEDKWCY_ 0 0 0 REV__nc|ENSG00000215864|P0C2Y1|NBPF7P REV__nc|ENSG00000215864|P0C2Y1|NBPF7P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7698974609375 2 543.731674 1085.4488 NaN NaN NaN NaN NaN NaN NaN 28.184 1 28.184 27.684 28.684 0 0 0 0 0.21486 1 4996 4996 9.3474 1.4373 1 + 6828 24272 4118 4122 7158 7158 -0.09051059459170574 DKEEFQRQ 8 Unmodified _DKEEFQRQ_ 0 0 0 ENST00000366554.2_1_1:241757174-241757237:-|nuORF ENST00000366554.2_1_1:241757174-241757237:-|nuORF ENST00000366554.2_1_1:241757174-241757237:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2107849121094 3 360.508722 1078.50434 0.19651 7.0845E-05 -0.2887 -0.00010408 -0.092191 -3.3236E-05 360.5086681792392 21.379 0.35145 19.904 19.701 20.052 -1.4742 12 9 2 0 0 0 1.0197 1 3595 3595 5.7319 3.6458 1 711900 6829 9046 4119 4123 7159 7159 -0.03177509947181534 DKEEFQRQ 8 Unmodified _DKEEFQRQ_ 0 0 0 ENST00000366554.2_1_1:241757174-241757237:-|nuORF ENST00000366554.2_1_1:241757174-241757237:-|nuORF ENST00000366554.2_1_1:241757174-241757237:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 3 360.508722 1078.50434 -1.3857 -0.00049955 0.92138 0.00033216 -0.4643 -0.00016738 360.50891877245186 21.558 0.41893 19.837 19.566 19.985 -1.7211 16 11 2 0 0 0 0.98537 1 3347 3347 8.1555 1.0538 1 308840 6830 9046 4119 4123 7160 7160 -0.03177509947181534 DKEEFYVVCL 10 Unmodified _DKEEFYVVCL_ 0 0 0 REV__ENSG00000139324|ENST00000266712|TMTC3 REV__ENSG00000139324|ENST00000266712|TMTC3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.751708984375 2 622.797014 1243.57948 NaN NaN NaN NaN NaN NaN NaN 141.62 1 141.62 141.12 142.12 0 0 0 0 0.22588 1 28224 28224 10.824 2.6684 1 + 6831 16515 4120 4124 7161 7161 -0.03257088530972396 DKEEIIELY 9 Unmodified _DKEEIIELY_ 0 0 0 REV__tr|U7SYH8|U7SYH8_FUSNUMethylated-DNA--protein-cysteinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00864PE=3SV=1 REV__tr|U7SYH8|U7SYH8_FUSNUMethylated-DNA--protein-cysteinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00864PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3359985351562 2 576.295162 1150.57577 NaN NaN NaN NaN NaN NaN NaN 102.77 1 98.444 97.944 98.944 -4.3208 0 0 0 0.20628 1 19675 19675 21.747 5.8995 1 + 6832 25230 4121 4125 7162 7162 0.006505649668270053 DKEEIIELY 9 Unmodified _DKEEIIELY_ 0 0 0 REV__tr|U7SYH8|U7SYH8_FUSNUMethylated-DNA--protein-cysteinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00864PE=3SV=1 REV__tr|U7SYH8|U7SYH8_FUSNUMethylated-DNA--protein-cysteinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00864PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3241577148438 2 576.295162 1150.57577 NaN NaN NaN NaN NaN NaN NaN 102.83 1 98.511 98.011 99.011 -4.3208 0 0 0 0.23508 1 19688 19688 10.824 0.024421 1 + 6833 25230 4121 4125 7163 7163 0.006505649668270053 DKEELIPSR 9 Unmodified _DKEELIPSR_ 0 0 0 REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7944946289062 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 139.97 1 139.97 139.47 140.47 0 0 0 0 0.23108 1 27844 27844 14.405 4.8614 1 + 6834 13202 4122 4126 7164 7164 0.032325202637593975 DKEHYCHY 8 Unmodified _DKEHYCHY_ 0 0 0 REV__ENSG00000162377|ENST00000371538|COA7 REV__ENSG00000162377|ENST00000371538|COA7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.79296875 2 547.721641 1093.42873 0.11493 6.2949E-05 0.83813 0.00045906 0.95306 0.00052201 547.7222680914398 142.1 0.13425 137.07 136.97 137.1 -5.0261 5 3 2 0 0 0 1.0147 1 27371 27371 2.3027 0 1 1463400 + 6835 17490 4123 4127 7165 7165 -0.11424810399125818 DKEKDKDKEK 10 Unmodified _DKEKDKDKEK_ 0 0 0 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 631.8035278320312 2 631.832974 1261.6514 NaN NaN NaN NaN NaN NaN NaN 167.27 1 162.49 161.99 162.99 -4.7898 0 0 0 0.22588 1 33716 33716 11.495 2.7493 1 6836 2160 4124 4128 7166 7166 0.0310354214709605 DKELGAEL 8 Unmodified _DKELGAEL_ 0 0 0 REV__ENST00000358207.9_2_2:217277495-217279408:+|nuORF REV__ENST00000358207.9_2_2:217277495-217279408:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2357482910156 2 437.729458 873.444362 -0.16251 -7.1135E-05 0.31839 0.00013937 0.15588 6.8235E-05 437.7295056994705 66.914 0.63363 66.914 66.664 67.298 0 25 17 2 0 0 0 0.78482 1 12926 12926 19.257 2.3147 1 1856700 + 6837 20834 4125 4129 7167 7167 0.002577993895556574 DKELMLERIN 10 Unmodified _DKELMLERIN_ 0 0 0 REV__ENST00000457177.5_1_19:58057843-58058188:-|nuORF REV__ENST00000457177.5_1_19:58057843-58058188:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7637939453125 2 630.834462 1259.65437 NaN NaN NaN NaN NaN NaN NaN 135.47 1 130.64 130.14 131.14 -4.8307 0 0 0 0.22588 1 26080 26080 8.1555 0 1 + 6838 21858 4126 4130 7168 7168 0.03493094000259589 DKELTFESI 9 Unmodified _DKELTFESI_ 0 0 0 REV__ZSCAN12|p.K467Nfs*109|1|0.22|ENSG00000158691|chr6:28390889-28390889|T/-|frameshift_variant REV__ZSCAN12|p.K467Nfs*109|1|0.22|ENSG00000158691|chr6:28390889-28390889|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2776489257812 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 145.8 1 140.69 140.19 141.19 -5.1108 0 0 0 0.23508 1 28183 28183 8.1555 1.4324 1 + 6839 25596 4127 4131 7169 7169 -0.0031399072172462184 DKEQQANF 8 Unmodified _DKEQQANF_ 0 0 0 tr|U7T8L1|U7T8L1_FUSNUPhagetailsheathproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00090PE=4SV=1 tr|U7T8L1|U7T8L1_FUSNUPhagetailsheathproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00090PE=4SV=1 tr|U7T8L1|U7T8L1_FUSNUPhagetailsheathproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00090PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2644958496094 2 490.227613 978.440674 -0.30668 -0.00015034 0.21113 0.0001035 -0.095556 -4.6844E-05 490.2277288453064 50.782 3.151 47.731 46.197 49.348 -3.0517 149 90 2 0 0 0 0.47729 1 9541 9541 29.082 5.061 1 4717000 6840 26508 4128 4132 7170 7170 -0.04940870384291429 DKERQKREHEE 11 Unmodified _DKERQKREHEE_ 0 0 0 ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT ENST00000549192.5_1_12:95650374-95690042:+|nuORF ENST00000549192.5_1_12:95650374-95690042:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3727416992188 2 742.366035 1482.71752 NaN NaN NaN NaN NaN NaN NaN 170.62 1 165.7 165.2 166.2 -4.9149 0 0 0 0.2367 1 33742 33742 2.9952 0 1 6841 1148 4129 4133 7171 7171 -0.0045324895813791954 DKESKGKQ 8 Unmodified _DKESKGKQ_ 0 0 0 ENST00000510552.1_1_4:38792706-38796227:-|nuORF ENST00000510552.1_1_4:38792706-38796227:-|nuORF ENST00000510552.1_1_4:38792706-38796227:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24615478515625 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 174 1 169.12 168.62 169.62 -4.8845 0 0 0 0.21486 1 34562 34562 5.2307 0 1 6842 10744 4130 4134 7172 7172 0.014560065124328503 DKESRRVLD 9 Unmodified _DKESRRVLD_ 0 0 0 REV__nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1 REV__nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.1250915527344 3 373.203522 1116.58874 -0.48806 -0.00018215 -0.0069712 -2.6017E-06 -0.49504 -0.00018475 373.5365321815386 62.891 0.10617 62.891 62.839 62.945 0 4 2 2 0 0 0 0.88158 1 12087 12087 0.69767 0.07084 1 478210 + 6843 17266 4131 4135 7173 7173 0.03510440869581544 DKEYDECTSD 10 Unmodified _DKEYDECTSD_ 0 0 0 nc|ENSG00000071537|Q9UBV2-2|SEL1L;ENSG00000071537|ENST00000336735|SEL1L nc|ENSG00000071537|Q9UBV2-2|SEL1L nc|ENSG00000071537|Q9UBV2-2|SEL1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2998046875 2 602.719158 1203.42376 0.48216 0.00029061 1.5674 0.00094468 2.0495 0.0012353 603.2217341572433 151.26 0.13831 146.02 145.94 146.07 -5.2365 5 3 2 0 0 0 0.91149 1 29322 29322 0.35063 0 1 1964000 6844 1448 4132 4136 7174 7174 -0.1698120384307913 DKFDLDLVT 9 Unmodified _DKFDLDLVT_ 0 0 0 REV__tr|U7SRM7|U7SRM7_FUSNURqc2homologRqcHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rqcHPE=3SV=1 REV__tr|U7SRM7|U7SRM7_FUSNURqc2homologRqcHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rqcHPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27685546875 2 533.276772 1064.53899 0.62849 0.00033516 -0.23486 -0.00012525 0.39363 0.00020991 533.2765762688794 86.232 1.0865 82.282 81.976 83.063 -3.9503 82 30 4 0 0 0 0.15889 1 16464 16464 22.736 0.6274 1 19406000 + 6845 25034 4133 4137 7175 7175 0.009303131409069465 DKFEQLTFI 9 Unmodified _DKFEQLTFI_ 0 0 0 REV__tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1 REV__tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2044982910156 3 380.869368 1139.58628 -0.20398 -7.7689E-05 2.2707 0.00086483 2.0667 0.00078714 380.87063057882614 80.68 0.52284 77.123 76.919 77.442 -3.557 23 14 2 0 0 0 0.79239 1 15805 15805 2.086 0.17963 1 1049200 + 6846 25315 4134 4138 7176 7176 0.022065924119033298 DKFICIREK 9 Unmodified _DKFICIREK_ 0 0 0 nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.P253Sfs*7|1|0.11|ENSG00000070371|chr22:19239313-19239314|-/A|frameshift_variant;CLTCL1|p.M473Ifs*76|1|0.05|ENSG00000070371|chr22:19233268-19233269|-/TCGG|frameshift_variant;CLTCL1|p.T738Qfs*24|1|0.03|ENSG00000070371|chr22:19223971-19223972|-/TTCTG|frameshift_variant nc|ENSG00000141367|Q00610-2|CLTC;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant nc|ENSG00000141367|Q00610-2|CLTC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3170776367188 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 175.12 1 170.33 169.83 170.83 -4.7898 0 0 0 0.23508 1 35801 35801 11.495 0 1 6847 4356;588 4135 4139 7177 7177 0.04758047525274378 DKFKSLIE 8 Unmodified _DKFKSLIE_ 0 0 0 REV__tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1 REV__tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2751770019531 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 154.3 1 149.08 148.58 149.58 -5.2209 0 0 0 0.21486 1 29915 29915 12.532 0 1 + 6848 25112 4136 4140 7178 7178 0.04846938211721863 DKFLESAELK 10 Unmodified _DKFLESAELK_ 0 0 0 REV__nc|ENSG00000128641|O43795-2|MYO1B REV__nc|ENSG00000128641|O43795-2|MYO1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2572631835938 2 590.316428 1178.6183 NaN NaN NaN NaN NaN NaN NaN 153.81 1 148.55 148.05 149.05 -5.2669 0 0 0 0.22543 1 29821 29821 19.362 7.1213 1 + 6849 15931 4137 4141 7179 7179 0.03613960095026414 DKFLKEKIKL 10 Unmodified _DKFLKEKIKL_ 0 0 0 ENST00000420252.1_1_7:12511002-12511287:+|nuORF ENST00000420252.1_1_7:12511002-12511287:+|nuORF ENST00000420252.1_1_7:12511002-12511287:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 631.4002685546875 2 631.397556 1260.78056 NaN NaN NaN NaN NaN NaN NaN 164.74 1 164.74 164.24 165.24 0 0 0 0 0.22588 1 33349 33349 3.5965 0.31518 1 6850 9657 4138 4142 7180 7180 0.16059968567833494 DKFLKHYQQNY 11 Unmodified _DKFLKHYQQNY_ 0 0 0 REV__ENSG00000175318|ENST00000309731|GRAMD2A REV__ENSG00000175318|ENST00000309731|GRAMD2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3678588867188 2 742.370058 1482.72556 NaN NaN NaN NaN NaN NaN NaN 140.31 1 140.31 139.81 140.81 0 0 0 0 0.23429 1 27928 27928 4.897 1.9018 1 + 6851 18472 4139 4143 7181 7181 0.003509300292989792 DKFLKHYQQNY 11 Unmodified _DKFLKHYQQNY_ 0 0 0 REV__ENSG00000175318|ENST00000309731|GRAMD2A REV__ENSG00000175318|ENST00000309731|GRAMD2A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3684692382812 2 742.370058 1482.72556 NaN NaN NaN NaN NaN NaN NaN 168.44 1 163.49 162.99 163.99 -4.948 0 0 0 0.23429 1 33207 33207 4.897 0.70751 1 + 6852 18472 4139 4143 7182 7182 0.003509300292989792 DKFTQTCSSY 10 Unmodified _DKFTQTCSSY_ 0 0 0 PARP15|p.R515Q|1|0.28|ENSG00000173200|chr3:122632191-122632191|G/A|missense_variant PARP15|p.R515Q|1|0.28|ENSG00000173200|chr3:122632191-122632191|G/A|missense_variant PARP15|p.R515Q|1|0.28|ENSG00000173200|chr3:122632191-122632191|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2538452148438 2 590.252971 1178.49139 NaN NaN NaN NaN NaN NaN NaN 41.839 1 41.839 41.339 42.339 0 0 0 0 0.22588 1 7813 7813 6.2058 0.47393 1 6853 12752 4140 4144 7183 7183 -0.0907170912159927 DKFTQTCSSY 10 Unmodified _DKFTQTCSSY_ 0 0 0 PARP15|p.R515Q|1|0.28|ENSG00000173200|chr3:122632191-122632191|G/A|missense_variant PARP15|p.R515Q|1|0.28|ENSG00000173200|chr3:122632191-122632191|G/A|missense_variant PARP15|p.R515Q|1|0.28|ENSG00000173200|chr3:122632191-122632191|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2491455078125 2 590.252971 1178.49139 0.51801 0.00030575 -1.8466 -0.00109 -1.3286 -0.00078422 590.251687781993 144.89 0.51596 139.82 139.49 140.01 -5.0671 22 14 2 0 0 0 0.6817 1 27918 27918 13.042 0.80181 1 4635100 6854 12752 4140 4144 7184 7184 -0.0907170912159927 DKFVEYSEED 10 Unmodified _DKFVEYSEED_ 0 0 0 REV__ENSG00000166165|ENST00000348956|CKB REV__ENSG00000166165|ENST00000348956|CKB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7537231445312 2 630.766965 1259.51938 NaN NaN NaN NaN NaN NaN NaN 137.69 1 132.85 132.35 133.35 -4.84 0 0 0 0.22588 1 26530 26530 6.2058 0 1 + 6855 17830 4141 4145 7185 7185 -0.10000107660516733 DKGGKQSPRL 10 Unmodified _DKGGKQSPRL_ 0 0 0 REV__ENST00000342081.7_1_4:74477471-74486347:-|nuORF REV__ENST00000342081.7_1_4:74477471-74486347:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79443359375 2 543.306729 1084.59891 0.14268 7.7522E-05 -0.26062 -0.0001416 -0.11794 -6.4077E-05 543.8091128329385 149.02 0.17264 143.87 143.82 143.99 -5.1557 5 4 2 0 0 0 0.86856 1 28857 28857 11.495 4.393 1 1314300 + 6856 20718 4142 4146 7186 7186 0.059990485947992056 DKGGTEMCYEQ 11 Unmodified _DKGGTEMCYEQ_ 0 0 0 REV__ENST00000567980.5_1_16:81819579-81955027:+|nuORF REV__ENST00000567980.5_1_16:81819579-81955027:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7540893554688 2 630.747195 1259.47984 NaN NaN NaN NaN NaN NaN NaN 139.35 1 134.5 134 135 -4.8492 0 0 0 0.23476 1 26862 26862 4.5289 0.93237 1 + 6857 19375 4143 4147 7187 7187 -0.13952274207258597 DKGPILLLIL 10 Unmodified _DKGPILLLIL_ 0 0 0 REV__ENST00000275072.4_1_6:89862778-89862823:+|nuORF REV__ENST00000275072.4_1_6:89862778-89862823:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7672119140625 2 547.862818 1093.71108 NaN NaN NaN NaN NaN NaN NaN 134.35 1 134.35 133.85 134.85 0 0 0 0 0.22588 1 26593 26593 1.4819 0 1 + 6858 20290 4144 4148 7188 7188 0.16797509619095763 DKGRISSRY 9 Unmodified _DKGRISSRY_ 0 0 0 nc|ENSG00000132259|Q8IV77-2|CNGA4;ENSG00000132259|ENST00000379936|CNGA4 nc|ENSG00000132259|Q8IV77-2|CNGA4 nc|ENSG00000132259|Q8IV77-2|CNGA4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2774047851562 2 541.291079 1080.56761 NaN NaN NaN NaN NaN NaN NaN 114.93 1 110.46 109.96 110.96 -4.4726 0 0 0 0.23508 1 22652 22652 11.64 0.52583 1 6859 3712 4145 4149 7189 7189 0.030544755607024854 DKHILAKIR 9 Unmodified _DKHILAKIR_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;SMARCA4|p.W875R|1|0.18|ENSG00000127616|chr19:11021731-11021731|T/C|missense_variant nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7672729492188 2 547.345658 1092.67676 0.45641 0.00024981 -0.25421 -0.00013914 0.2022 0.00011067 547.345412857608 153.15 0.14499 147.93 147.86 148 -5.2209 5 3 2 0 0 0 0.85913 1 29690 29690 10.074 8.0142 1 540450 6860 1613 4146 4150 7190 7190 0.13413106250823148 DKHKELEDL 9 Unmodified _DKHKELEDL_ 0 0 0 ENSG00000172296|ENST00000399002|SPTLC3 ENSG00000172296|ENST00000399002|SPTLC3 ENSG00000172296|ENST00000399002|SPTLC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.19622802734375 3 376.196144 1125.5666 NaN NaN NaN NaN NaN NaN NaN 60.122 1 56.808 56.308 57.308 -3.3139 0 0 0 0.23508 1 11192 11192 5.2969 1.4206 1 6861 6206 4147 4151 7191 7191 0.008842164011412024 DKHKPFGWVF 10 Unmodified _DKHKPFGWVF_ 0 0 0 REV__nc|ENSG00000116396|Q03721-2|KCNC4 REV__nc|ENSG00000116396|Q03721-2|KCNC4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7554321289062 2 630.82984 1259.64513 NaN NaN NaN NaN NaN NaN NaN 141.69 1 136.7 136.2 137.2 -4.9877 0 0 0 0.22588 1 27289 27289 10.824 2.6684 1 + 6862 22299 4148 4152 7192 7192 0.025691134968838014 DKHKVKRQRL 10 Unmodified _DKHKVKRQRL_ 0 0 0 nc|ENSG00000175029|P56545|CTBP2 nc|ENSG00000175029|P56545|CTBP2 nc|ENSG00000175029|P56545|CTBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 654.687255859375 2 654.40457 1306.79459 1.1514 0.00075347 -2.9723 -0.0019451 -1.8209 -0.0011916 654.9052707814851 173.35 0.17072 168.56 168.51 168.68 -4.7898 5 4 2 0 0 0 0.74994 1 35373 35373 5.7319 1.7875 1 3840100 6863 12474 4149 4153 7193 7193 0.1534605883950917 DKHQFGAA 8 Unmodified _DKHQFGAA_ 0 0 0 REV__nc|ENSG00000113389|P17342-2|NPR3 REV__nc|ENSG00000113389|P17342-2|NPR3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.228271484375 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 28.721 1 28.721 28.221 29.221 0 0 0 0 0.23107 1 5111 5111 1.4551 1.1594 1 + 6864 15340 4150 4154 7194 7194 -0.027245144849530334 DKIADTYHGLK 11 Unmodified _DKIADTYHGLK_ 0 0 0 REV__ENSG00000197860|ENST00000381007|SGTB REV__ENSG00000197860|ENST00000381007|SGTB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.770263671875 2 630.832777 1259.651 NaN NaN NaN NaN NaN NaN NaN 154.74 1 149.96 149.46 150.46 -4.7791 0 0 0 0.21872 1 30758 30758 14.405 2.9107 1 + 6865 19367 4151 4155 7195 7195 0.031561672178895606 DKIDVNIY 8 Unmodified _DKIDVNIY_ 0 0 0 REV__tr|U7T169|U7T169_FUSNUPeptidaseC39-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00712PE=4SV=1 REV__tr|U7T169|U7T169_FUSNUPeptidaseC39-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00712PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2575988769531 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 169.95 1 169.95 169.45 170.45 0 0 0 0 0.21486 1 34909 34909 10.824 0.75 1 + 6866 25290 4152 4156 7196 7196 0.012100613149982564 DKIEENCE 8 Unmodified _DKIEENCE_ 0 0 0 REV__nc|ENSG00000165240|Q04656-6|ATP7A REV__nc|ENSG00000165240|Q04656-6|ATP7A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2751770019531 2 490.205489 978.396426 NaN NaN NaN NaN NaN NaN NaN 145.22 1 140.28 139.78 140.78 -4.9445 0 0 0 0.21486 1 28073 28073 10.824 2.9138 1 + 6867 24145 4153 4157 7197 7197 -0.09363642592779797 DKIEYIPYY 9 Unmodified _DKIEYIPYY_ 0 0 0 REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.27197265625 2 602.300247 1202.58594 1.0906 0.00065687 2.2102 0.0013312 3.3008 0.0019881 602.8047284642754 145.29 0.17044 140.62 140.51 140.68 -4.6694 5 3 2 0 0 0 0.60805 1 28786 28786 12.532 2.4576 1 4299700 + 6868 17891 4154 4158 7198 7198 -0.007248273079312639 DKIEYIPYY 9 Unmodified _DKIEYIPYY_ 0 0 0 REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3007202148438 2 602.300247 1202.58594 NaN NaN NaN NaN NaN NaN NaN 142.79 1 138.13 137.63 138.63 -4.656 0 0 0 0.23508 1 28226 28226 10.824 0.75 1 + 6869 17891 4154 4158 7199 7199 -0.007248273079312639 DKIEYIPYY 9 Unmodified _DKIEYIPYY_ 0 0 0 REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.29833984375 2 602.300247 1202.58594 1.0906 0.00065687 2.2102 0.0013312 3.3008 0.0019881 602.8047284642754 145.29 0.17044 140.62 140.51 140.68 -4.6694 5 3 2 0 0 0 0.8319 1 28808 28808 12.532 5.2423 1 4299700 + 6870 17891 4154 4158 7200 7200 -0.007248273079312639 DKIEYIPYY 9 Unmodified _DKIEYIPYY_ 0 0 0 REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2972412109375 2 602.300247 1202.58594 NaN NaN NaN NaN NaN NaN NaN 145.63 1 140.52 140.02 141.02 -5.1108 0 0 0 0.23508 1 28144 28144 12.532 2.4576 1 + 6871 17891 4154 4158 7201 7201 -0.007248273079312639 DKIEYSVVDH 10 Unmodified _DKIEYSVVDH_ 0 0 0 REV__ENSG00000206530|ENST00000393845|CFAP44 REV__ENSG00000206530|ENST00000393845|CFAP44 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2926635742188 2 602.79586 1203.57717 0.60271 0.00036331 0.32061 0.00019326 0.92332 0.00055658 603.2959857236049 170.31 0.13863 165.44 165.33 165.47 -4.873 5 3 2 0 0 0 0.89145 1 33677 33677 8.1555 1.9497 1 6584500 + 6872 19622 4155 4159 7202 7202 -0.016478009444199415 DKILEKSEY 9 Unmodified _DKILEKSEY_ 0 0 0 REV__nc|ENSG00000138802|O95487-2|SEC24B REV__nc|ENSG00000138802|O95487-2|SEC24B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 376.0814514160156 3 375.532645 1123.5761 -0.4296 -0.00016133 0.33646 0.00012635 -0.093144 -3.4979E-05 375.5327691586288 36.786 0.42605 34.449 34.275 34.701 -2.3375 15 11 2 0 0 0 0.88109 1 6501 6501 2.086 0 1 726330 + 6873 16495 4156 4160 7203 7203 0.019259846866816588 DKINMFRRKYI 11 Unmodified _DKINMFRRKYI_ 0 0 0 tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1 tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1 tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.37109375 2 742.413746 1482.81294 NaN NaN NaN NaN NaN NaN NaN 140.05 1 140.05 139.55 140.55 0 0 0 0 0.2367 1 27863 27863 2.9952 0.26005 1 6874 26179 4157 4161 7204 7204 0.09084432699205536 DKIQCTYLC 9 Unmodified _DKIQCTYLC_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF;REV__ENSG00000154144|ENST00000441174|TBRG1 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.777099609375 2 543.751553 1085.48855 0.41428 0.00022527 -1.4871 -0.00080861 -1.0728 -0.00058335 544.2537170240355 147.54 0.1057 142.48 142.42 142.53 -5.0595 4 2 2 0 0 0 0.67531 1 28559 28559 7.9102 0 1 939160 + 6875 22757;17170 4158 4162 7205 7205 -0.05077255780111045 DKISVVKGLK 10 Unmodified _DKISVVKGLK_ 0 0 0 tr|U7SG99|U7SG99_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02230PE=3SV=1 tr|U7SG99|U7SG99_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02230PE=3SV=1 tr|U7SG99|U7SG99_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02230PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7838745117188 2 543.847699 1085.68084 NaN NaN NaN NaN NaN NaN NaN 158.51 1 153.72 153.22 154.22 -4.7952 0 0 0 0.22559 1 31521 31521 17.113 5.4726 1 6876 25896 4159 4163 7206 7206 0.14143150953873374 DKKASALL 8 Unmodified _DKKASALL_ 0 0 0 REV__nc|ENSG00000138180|Q53EZ4-2|CEP55 REV__nc|ENSG00000138180|Q53EZ4-2|CEP55 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 424.27044677734375 2 423.258185 844.501818 -0.12989 -5.4977E-05 0.36858 0.00015601 0.23869 0.00010103 423.2582840877036 27.27 0.81098 25.348 25.122 25.933 -1.9222 58 22 3 0 0 0 8448 1 4610 4610 18.373 8.8291 1 15539000 + 6877 16445 4160 4164 7207 7207 0.07334686385797795 DKKDKLRY 8 Unmodified _DKKDKLRY_ 0 0 0 nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B nc|ENSG00000139718|Q9UPS6-2|SETD1B nc|ENSG00000139718|Q9UPS6-2|SETD1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2860717773438 2 533.306198 1064.59784 0.35056 0.00018696 4.0018 0.0021342 4.3524 0.0023212 533.8072577129442 143.96 0.35364 139.01 138.74 139.1 -4.9445 13 9 2 0 0 0 0.99494 1 27805 27805 2.0598 0.40713 1 1592100 6878 4261 4161 4165 7208 7208 0.06812834225888764 DKKFQEAVE 9 Unmodified _DKKFQEAVE_ 0 0 0 ENSG00000177239|ENST00000371589|MAN1B1 ENSG00000177239|ENST00000371589|MAN1B1 ENSG00000177239|ENST00000371589|MAN1B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7808227539062 2 547.279846 1092.54514 0.31824 0.00017417 -1.7796 -0.00097394 -1.4614 -0.00079978 547.2789554694278 152.61 0.22449 147.86 147.77 148 -4.7523 6 5 2 0 0 0 0.81703 1 30310 30310 10.074 2.1638 1 671850 6879 6502 4162 4166 7209 7209 0.002568313724395921 DKKHKKRKHR 10 Unmodified _DKKHKKRKHR_ 0 0 0 ENSG00000165632|ENST00000344293|TAF3 ENSG00000165632|ENST00000344293|TAF3 ENSG00000165632|ENST00000344293|TAF3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 680.9244384765625 2 680.923461 1359.83237 NaN NaN NaN NaN NaN NaN NaN 166.76 1 166.76 166.26 167.26 0 0 0 0 0.22588 1 34010 34010 3.2813 0.28607 1 6880 5645 4163 4167 7210 7210 0.16684569824951723 DKKHVSSYCI 10 Unmodified _DKKHVSSYCI_ 0 0 0 REV__nc|ENSG00000022840|Q8N5U6-2|RNF10 REV__nc|ENSG00000022840|Q8N5U6-2|RNF10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2766723632812 2 590.294973 1178.57539 NaN NaN NaN NaN NaN NaN NaN 151.49 1 146.31 145.81 146.81 -5.1759 0 0 0 0.22588 1 29361 29361 9.3831 0.63772 1 + 6881 13991 4164 4168 7211 7211 -0.006751332340172667 DKKIHKLLV 9 Unmodified _DKKIHKLLV_ 0 0 0 REV__ENST00000350896.3_1_8:16035456-16050289:-|nuORF REV__ENST00000350896.3_1_8:16035456-16050289:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78271484375 2 547.358234 1092.70191 0.24402 0.00013357 -1.1263 -0.00061648 -0.88227 -0.00048292 547.3585136124035 141.93 0.1794 137.28 137.17 137.35 -4.6493 6 4 2 0 0 0 0.87974 1 28024 28024 4.3292 3.8709 1 2023100 + 6882 20766 4165 4169 7212 7212 0.15927161053400596 DKKIKEDKIQ 10 Unmodified _DKKIKEDKIQ_ 0 0 0 REV__ENST00000482470.5_1_7:134552484-134644871:+|nuORF REV__ENST00000482470.5_1_7:134552484-134644871:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7652587890625 2 622.864077 1243.7136 NaN NaN NaN NaN NaN NaN NaN 138.15 1 133.31 132.81 133.81 -4.84 0 0 0 0.22588 1 26620 26620 9.3831 0 1 + 6883 22191 4166 4170 7213 7213 0.10149313286069628 DKKIKEYY 8 Unmodified _DKKIKEYY_ 0 0 0 REV__CLASRP|p.P95Lfs*81|3|0.29|ENSG00000104859|chr19:45052871-45052871|C/-|frameshift_variant;REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7932739257812 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 173.05 1 168.17 167.67 168.67 -4.881 0 0 0 0.21486 1 34383 34383 12.532 1.7076 1 + 6884 13442;14948 4167 4171 7214 7214 0.036346097574551095 DKKIKRPRTKI 11 Unmodified _DKKIKRPRTKI_ 0 0 0 REV__PRPF38B|p.R352Lfs*11|1|0.04|ENSG00000134186|chr1:108699431-108699432|-/TCTT|frameshift_variant REV__PRPF38B|p.R352Lfs*11|1|0.04|ENSG00000134186|chr1:108699431-108699432|-/TCTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 691.7474975585938 2 691.951353 1381.88815 NaN NaN NaN NaN NaN NaN NaN 167.87 1 167.87 167.37 168.37 0 0 0 0 0.2367 1 34333 34333 2.9952 0 1 + 6885 16196 4168 4172 7215 7215 0.21248358221896524 DKKIRAPIPR 10 Unmodified _DKKIRAPIPR_ 0 0 0 REV__ENST00000334944.9_1_11:64546129-64546228:-|nuORF REV__ENST00000334944.9_1_11:64546129-64546228:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 597.4127197265625 2 597.377489 1192.74043 NaN NaN NaN NaN NaN NaN NaN 166.3 1 166.3 165.8 166.8 0 0 0 0 0.22588 1 33858 33858 8.7454 0.58988 1 + 6886 20649 4169 4173 7216 7216 0.15176466687921675 DKKKEKEKKLI 11 Unmodified _DKKKEKEKKLI_ 0 0 0 REV__ENSG00000187554|ENST00000642603|TLR5 REV__ENSG00000187554|ENST00000642603|TLR5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 693.705078125 2 693.937576 1385.8606 NaN NaN NaN NaN NaN NaN NaN 171 1 166.21 165.71 166.71 -4.7898 0 0 0 0.22683 1 34739 34739 10.8 7.5182 1 + 6887 19096 4170 4174 7217 7217 0.18310410171034164 DKKKFKNMI 9 Unmodified _DKKKFKNMI_ 0 0 0 REV__ENST00000258149.9_1_12:69235976-69236204:+|nuORF REV__ENST00000258149.9_1_12:69235976-69236204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3168334960938 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 165.97 1 165.97 165.47 166.47 0 0 0 0 0.23508 1 33747 33747 10.824 1.4408 1 + 6888 20147 4171 4175 7218 7218 0.08394924422009353 DKKKKDKKRR 10 Unmodified _DKKKKDKKRR_ 0 0 0 ZNF609|p.K734Rfs*12|2|0.43|ENSG00000180357|chr15:64675048-64675048|A/-|frameshift_variant ZNF609|p.K734Rfs*12|2|0.43|ENSG00000180357|chr15:64675048-64675048|A/-|frameshift_variant ZNF609|p.K734Rfs*12|2|0.43|ENSG00000180357|chr15:64675048-64675048|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 665.1957397460938 2 665.425502 1328.83645 0.42905 0.0002855 1.8113 0.0012053 2.2403 0.0014908 665.4246835936609 170.49 0.098923 170.49 170.41 170.51 0 4 2 2 0 0 0 0.91149 1 35055 35055 3.2813 0.28607 1 9955900 6889 26631 4172 4176 7219 7219 0.18518614528011312 DKKLPEMDID 10 Unmodified _DKKLPEMDID_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000170606|P34932-2|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.281005859375 2 602.299921 1202.58529 NaN NaN NaN NaN NaN NaN NaN 166.24 1 161.29 160.79 161.79 -4.9484 0 0 0 0.22583 1 32552 32552 13.906 0 1 6890 6085 4173 4177 7220 7220 -0.007899900193251597 DKKLVLIPLI 10 Unmodified _DKKLVLIPLI_ 0 0 0 ENSG00000180758|ENST00000377411|GPR157 ENSG00000180758|ENST00000377411|GPR157 ENSG00000180758|ENST00000377411|GPR157 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3231201171875 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 137.18 1 132.34 131.84 132.84 -4.84 0 0 0 0.22588 1 26427 26427 1.4819 0.28856 1 6891 6692 4174 4178 7221 7221 0.19957771544500247 DKKPYKCEEC 10 Unmodified _DKKPYKCEEC_ 0 0 0 nc|ENSG00000196268|Q6ZR52|ZNF493;ZNF493|p.K499Nfs*51|1|0.16|ENSG00000196268|chr19:21424536-21424536|A/-|frameshift_variant;ENSG00000196268|ENST00000392288|ZNF493 nc|ENSG00000196268|Q6ZR52|ZNF493 nc|ENSG00000196268|Q6ZR52|ZNF493 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 621.9485473632812 2 621.778299 1241.54204 NaN NaN NaN NaN NaN NaN NaN 171.47 1 166.55 166.05 167.05 -4.9149 0 0 0 0.22588 1 33960 33960 5.7319 0 1 6892 7252 4175 4179 7222 7222 -0.06906503068239545 DKKRKLKRKRQ 11 Unmodified _DKKRKLKRKRQ_ 0 0 0 REV__IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant REV__IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3713989257812 2 742.486425 1482.9583 NaN NaN NaN NaN NaN NaN NaN 162.72 1 162.72 162.22 163.22 0 0 0 0 0.23698 1 32735 32735 1.1933 0.92432 1 + 6893 14420 4176 4180 7223 7223 0.2361365661038235 DKKRKLKRKRQ 11 Unmodified _DKKRKLKRKRQ_ 0 0 0 REV__IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant REV__IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3727416992188 2 742.486425 1482.9583 NaN NaN NaN NaN NaN NaN NaN 172.49 1 167.61 167.11 168.11 -4.881 0 0 0 0.23698 1 34243 34243 2.7352 2.7352 1 + 6894 14420 4176 4180 7224 7224 0.2361365661038235 DKKRKLKRKRQ 11 Unmodified _DKKRKLKRKRQ_ 0 0 0 REV__IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant REV__IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3988647460938 2 742.486425 1482.9583 NaN NaN NaN NaN NaN NaN NaN 173.18 1 168.3 167.8 168.8 -4.881 0 0 0 0.23698 1 34415 34415 1.0715 1.0715 1 + 6895 14420 4176 4180 7225 7225 0.2361365661038235 DKKRLHLG 8 Unmodified _DKKRLHLG_ 0 0 0 ENST00000533774.5_1_11:22848847-22850842:-|nuORF;ENST00000530199.5_1_11:22848844-22850840:-|nuORF;ENST00000354193.4_1_11:22848847-22851305:-|nuORF ENST00000533774.5_1_11:22848847-22850842:-|nuORF ENST00000533774.5_1_11:22848847-22850842:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.86676025390625 3 322.866293 965.577048 NaN NaN NaN NaN NaN NaN NaN 18.202 1 18.202 17.702 18.702 0 0 0 0 0.21486 1 2915 2915 0.45834 0 1 6896 8939 4177 4181 7226 7226 0.09288288636901143 DKKTRRKFLDL 11 Unmodified _DKKTRRKFLDL_ 0 0 0 SAMD14|p.S286Afs*67|1|0.49|ENSG00000167100|chr17:50114274-50114274|G/-|frameshift_variant;ENST00000508892.5_1_17:48190259-48195083:-|nuORF;ENSG00000167100|ENST00000330175|SAMD14;nc|ENSG00000167100|Q8IZD0-2|SAMD14 SAMD14|p.S286Afs*67|1|0.49|ENSG00000167100|chr17:50114274-50114274|G/-|frameshift_variant SAMD14|p.S286Afs*67|1|0.49|ENSG00000167100|chr17:50114274-50114274|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 473.7752380371094 3 473.952537 1418.83578 NaN NaN NaN NaN NaN NaN NaN 155.56 1 155.56 155.06 156.06 0 0 0 0 0.22632 1 31187 31187 0.172 0 1 6897 5781 4178 4182 7227 7227 0.14311775088322065 DKLAAIEKEMP 11 Unmodified _DKLAAIEKEMP_ 0 0 0 REV__ENST00000575475.2_1_17:5185712-5281605:+|nuORF REV__ENST00000575475.2_1_17:5185712-5281605:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7589721679688 2 622.831388 1243.64822 NaN NaN NaN NaN NaN NaN NaN 152.86 1 148.09 147.59 148.59 -4.7684 0 0 0 0.22683 1 30373 30373 10.8 1.4164 1 + 6898 14012 4179 4183 7228 7228 0.0361457576873363 DKLAKQERKE 10 Unmodified _DKLAKQERKE_ 0 0 0 ENSG00000180329|ENST00000315286|CCDC43 ENSG00000180329|ENST00000315286|CCDC43 ENSG00000180329|ENST00000315286|CCDC43 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.780517578125 2 622.851501 1243.68845 NaN NaN NaN NaN NaN NaN NaN 148.37 1 148.37 147.87 148.87 0 0 0 0 0.22588 1 29690 29690 11.495 0.6952 1 6899 6667 4180 4184 7229 7229 0.0763525848349218 DKLALLGWY 9 Unmodified _DKLALLGWY_ 0 0 0 REV__ENST00000350997.11_1_11:61568989-61569154:-|nuORF REV__ENST00000350997.11_1_11:61568989-61569154:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015686035156 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 95.628 1 91.437 90.937 91.937 -4.1911 0 0 0 0.21768 1 18251 18251 18.373 0.93045 1 + 6900 20767 4181 4185 7230 7230 0.05019217482708882 DKLANMSTENG 11 Unmodified _DKLANMSTENG_ 0 0 0 REV__ENSG00000187545|ENST00000235347|PRAMEF10 REV__ENSG00000187545|ENST00000235347|PRAMEF10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.27587890625 2 590.269152 1178.52375 NaN NaN NaN NaN NaN NaN NaN 161.74 1 156.55 156.05 157.05 -5.1878 0 0 0 0.23151 1 31392 31392 7.1017 0.37856 1 + 6901 19094 4182 4186 7231 7231 -0.05836921718582744 DKLAQLNTT 9 Unmodified _DKLAQLNTT_ 0 0 0 REV__ENSG00000283528|ENST00000636941|TCAF2C REV__ENSG00000283528|ENST00000636941|TCAF2C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.1954040527344 3 335.185468 1002.53457 NaN NaN NaN NaN NaN NaN NaN 57.939 1 57.939 57.439 58.439 0 0 0 0 0.23508 1 11084 11084 4.897 1.31 1 + 6902 18157 4183 4187 7232 7232 0.033408487179940494 DKLAYLVDDQ 10 Unmodified _DKLAYLVDDQ_ 0 0 0 REV__ENSG00000085840|ENST00000371568|ORC1 REV__ENSG00000085840|ENST00000371568|ORC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2660522460938 2 590.298236 1178.58192 NaN NaN NaN NaN NaN NaN NaN 161.87 1 156.68 156.18 157.18 -5.1878 0 0 0 0.22588 1 31421 31421 11.495 4.2055 1 + 6903 14479 4184 4188 7233 7233 -0.00022916801663086517 DKLEQIRKDY 10 Unmodified _DKLEQIRKDY_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2161560058594 3 436.569981 1306.68811 0.087934 3.8389E-05 -0.081758 -3.5693E-05 0.0061764 2.6964E-06 436.5700202181179 104.95 1.878 100.58 100.08 101.96 -4.3742 172 53 6 0 0 0 0.71402 1 20244 20244 9.7643 0.52048 1 276660000 6904 4282 4185 4189 7234 7234 0.04703838763657586 DKLEQIRKDY 10 Unmodified _DKLEQIRKDY_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2158508300781 3 436.569981 1306.68811 0.57041 0.00024902 -0.51816 -0.00022621 0.052245 2.2809E-05 436.5698345611249 104.66 2.17 100.6 100.13 102.3 -4.0543 190 61 6 0 0 0 0.67701 1 20263 20263 13.519 5.2322 1 288340000 6905 4282 4185 4189 7235 7235 0.04703838763657586 DKLEQIRKDY 10 Unmodified _DKLEQIRKDY_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 436.569981 1306.68811 -0.36148 -0.00015781 0.41731 0.00018219 0.055835 2.4376E-05 436.5702561618844 104.81 1.716 100.59 100.16 101.88 -4.2183 0.0023759 0.00054231 NaN 13.519 177 48 6 NaN NaN NaN NaN 0 NaN NaN 0 324880000 6906 4282 4185 4189 0.04703838763657586 DKLEQIRKDY 10 Unmodified _DKLEQIRKDY_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 436.569981 1306.68811 0.087934 3.8389E-05 -0.081758 -3.5693E-05 0.0061764 2.6964E-06 436.5700202181179 104.95 1.878 100.58 100.08 101.96 -4.3742 -0.014482 -0.00011133 NaN 13.519 172 53 6 NaN NaN NaN NaN 0 NaN NaN 0 276660000 6907 4282 4185 4189 0.04703838763657586 DKLEWRYR 8 Unmodified _DKLEWRYR_ 0 0 0 REV__nc|ENSG00000140932|Q8TAZ6-2|CMTM2 REV__nc|ENSG00000140932|Q8TAZ6-2|CMTM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 389.2447509765625 3 389.208607 1164.60399 0.24232 9.4311E-05 -1.1801 -0.00045931 -0.9378 -0.000365 389.207879980676 65.915 0.69781 62.457 62.209 62.907 -3.4581 23 19 2 0 0 0 0.86826 1 12411 12411 1.3295 0.25807 1 751290 + 6908 16604 4186 4190 7236 7236 0.028273524573933173 DKLEWRYR 8 Unmodified _DKLEWRYR_ 0 0 0 REV__nc|ENSG00000140932|Q8TAZ6-2|CMTM2 REV__nc|ENSG00000140932|Q8TAZ6-2|CMTM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 389.208607 1164.60399 -0.40338 -0.000157 -0.08505 -3.3102E-05 -0.48843 -0.0001901 389.2084653994361 62.754 0.63808 62.754 62.381 63.019 0 0.2546 0.00060847 NaN 1.3295 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 852300 + 6909 16604 4186 4190 0.028273524573933173 DKLEWRYR 8 Unmodified _DKLEWRYR_ 0 0 0 REV__nc|ENSG00000140932|Q8TAZ6-2|CMTM2 REV__nc|ENSG00000140932|Q8TAZ6-2|CMTM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 389.208607 1164.60399 -0.20368 -7.9274E-05 -0.57091 -0.0002222 -0.77459 -0.00030148 389.20833597180706 65.447 0.67045 62.4 62.139 62.809 -3.047 -0.099448 4.1167E-05 NaN 1.3295 22 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1525100 + 6910 16604 4186 4190 0.028273524573933173 DKLEWRYR 8 Unmodified _DKLEWRYR_ 0 0 0 REV__nc|ENSG00000140932|Q8TAZ6-2|CMTM2 REV__nc|ENSG00000140932|Q8TAZ6-2|CMTM2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 389.208607 1164.60399 0.24232 9.4311E-05 -1.1801 -0.00045931 -0.9378 -0.000365 389.207879980676 65.915 0.69781 62.457 62.209 62.907 -3.4581 -0.043022 -0.00067016 NaN 1.3295 23 19 2 NaN NaN NaN NaN 0 NaN NaN 0 751290 + 6911 16604 4186 4190 0.028273524573933173 DKLEWRYR 8 Unmodified _DKLEWRYR_ 0 0 0 REV__nc|ENSG00000140932|Q8TAZ6-2|CMTM2 REV__nc|ENSG00000140932|Q8TAZ6-2|CMTM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 389.208607 1164.60399 -0.32244 -0.0001255 -1.0539 -0.00041019 -1.3764 -0.00053569 389.20803982963747 65.671 0.41969 62.388 62.23 62.65 -3.2832 -0.11213 -0.0005228 NaN 1.3295 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 794940 + 6912 16604 4186 4190 0.028273524573933173 DKLEYDVTV 9 Unmodified _DKLEYDVTV_ 0 0 0 nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5 nc|ENSG00000052126|Q9HAU0-5|PLEKHA5 nc|ENSG00000052126|Q9HAU0-5|PLEKHA5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2737426757812 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 141.46 1 141.46 140.96 141.96 0 0 0 0 0.23508 1 28184 28184 13.042 2.9685 1 6913 1250 4187 4191 7237 7237 -0.0031399072172462184 DKLEYDVTV 9 Unmodified _DKLEYDVTV_ 0 0 0 nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5 nc|ENSG00000052126|Q9HAU0-5|PLEKHA5 nc|ENSG00000052126|Q9HAU0-5|PLEKHA5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2704467773438 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 146.17 1 141.17 140.67 141.67 -5 0 0 0 0.23508 1 28282 28282 8.7454 0 1 6914 1250 4187 4191 7238 7238 -0.0031399072172462184 DKLFKRQF 8 Unmodified _DKLFKRQF_ 0 0 0 REV__nc|ENSG00000228741|Q96N96-5|SPATA13 REV__nc|ENSG00000228741|Q96N96-5|SPATA13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2784423828125 2 541.311284 1080.60801 NaN NaN NaN NaN NaN NaN NaN 135.92 1 135.92 135.42 136.42 0 0 0 0 0.21171 1 26929 26929 15.847 1.2655 1 + 6915 18812 4188 4192 7239 7239 0.07093441951110435 DKLFRYIDEER 11 Unmodified _DKLFRYIDEER_ 0 0 0 REV__nc|ENSG00000124256|Q9H171-6|ZBP1 REV__nc|ENSG00000124256|Q9H171-6|ZBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3812866210938 2 742.380623 1482.74669 NaN NaN NaN NaN NaN NaN NaN 171.54 1 171.54 171.04 172.04 0 0 0 0 0.23429 1 35347 35347 4.897 1.9018 1 + 6916 15768 4189 4193 7240 7240 0.02462895338112503 DKLFVNML 8 Unmodified _DKLFVNML_ 0 0 0 REV__CON__Q2UVX4 REV__CON__Q2UVX4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26702880859375 2 490.267696 978.520839 NaN NaN NaN NaN NaN NaN NaN 170.13 1 170.13 169.63 170.63 0 0 0 0 0.2343 1 34966 34966 0.62683 0 1 + + 6917 13541 4190 4194 7241 7241 0.030718996851987868 DKLGSFMYDK 10 Unmodified _DKLGSFMYDK_ 0 0 0 REV__ENSG00000102218|ENST00000218340|RP2 REV__ENSG00000102218|ENST00000218340|RP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3004760742188 2 602.289356 1202.56416 NaN NaN NaN NaN NaN NaN NaN 148.49 1 143.33 142.83 143.83 -5.1557 0 0 0 0.22588 1 28748 28748 11.495 1.4208 1 + 6918 14827 4191 4195 7242 7242 -0.029019553281614208 DKLKEETVY 9 Unmodified _DKLKEETVY_ 0 0 0 REV__ENSG00000133030|ENST00000651222|MPRIP REV__ENSG00000133030|ENST00000651222|MPRIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.11773681640625 3 375.532645 1123.5761 0.2275 8.5434E-05 -0.63073 -0.00023686 -0.40323 -0.00015143 375.5323917559935 33.432 0.45523 31.285 31.041 31.496 -2.1468 31 12 4 0 0 0 0.68708 1 5806 5806 7.1017 0 1 1773400 + 6919 16150 4192 4196 7243 7243 0.019259846866589214 DKLKKSISY 9 Unmodified _DKLKKSISY_ 0 0 0 REV__tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1 REV__tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2728881835938 2 541.316232 1080.61791 0.21904 0.00011857 3.1662 0.0017139 3.3852 0.0018325 541.3175849849662 81.695 0.34318 78.138 77.859 78.202 -3.557 14 9 2 0 0 0 0.82765 1 15905 15905 2.9952 1.5133 1 874830 + 6920 25087 4193 4197 7244 7244 0.08082585165857381 DKLKTCFMT 9 Unmodified _DKLKTCFMT_ 0 0 0 REV__ENST00000512983.5_1_4:156617950-156632415:+|nuORF REV__ENST00000512983.5_1_4:156617950-156632415:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.776123046875 2 543.769745 1085.52494 NaN NaN NaN NaN NaN NaN NaN 162.31 1 157.52 157.02 158.02 -4.7898 0 0 0 0.23508 1 32294 32294 10.074 1.4806 1 + 6921 22565 4194 4198 7245 7245 -0.014403788833988074 DKLMACANKW 10 Unmodified _DKLMACANKW_ 0 0 0 REV__ENSG00000101346|ENST00000375749|POFUT1 REV__ENSG00000101346|ENST00000375749|POFUT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2765502929688 2 590.286094 1178.55763 NaN NaN NaN NaN NaN NaN NaN 147.54 1 147.54 147.04 148.04 0 0 0 0 0.22588 1 29510 29510 6.2058 0.9089 1 + 6922 14782 4195 4199 7246 7246 -0.02450171760574449 DKLNFSNML 9 Unmodified _DKLNFSNML_ 0 0 0 REV__ENSG00000127580|ENST00000293883|WDR24 REV__ENSG00000127580|ENST00000293883|WDR24 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2737426757812 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 137.8 1 137.8 137.3 138.3 0 0 0 0 0.22823 1 27340 27340 15.248 5.1746 1 + 6923 15892 4196 4200 7247 7247 -0.00966207154078802 DKLNFSNML 9 Unmodified _DKLNFSNML_ 0 0 0 REV__ENSG00000127580|ENST00000293883|WDR24 REV__ENSG00000127580|ENST00000293883|WDR24 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2710571289062 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 144.31 1 144.31 143.81 144.81 0 0 0 0 0.23508 1 28829 28829 12.241 0.60036 1 + 6924 15892 4196 4200 7248 7248 -0.00966207154078802 DKLSNHQYF 9 Unmodified _DKLSNHQYF_ 0 0 0 REV__VAV1|p.Q747H|1|0.4|ENSG00000141968|chr19:6852988-6852988|G/T|missense_variant REV__VAV1|p.Q747H|1|0.4|ENSG00000141968|chr19:6852988-6852988|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.326904296875 2 576.277638 1150.54072 NaN NaN NaN NaN NaN NaN NaN 171.15 1 166.27 165.77 166.77 -4.873 0 0 0 0.22621 1 33906 33906 15.847 7.937 1 + 6925 25532 4197 4201 7249 7249 -0.028526330504973885 DKLVDENAY 9 Unmodified _DKLVDENAY_ 0 0 0 tr|U7T508|U7T508_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00628PE=3SV=1 tr|U7T508|U7T508_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00628PE=3SV=1 tr|U7T508|U7T508_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00628PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.265625 2 533.756204 1065.49785 0.1284 6.8535E-05 -0.33059 -0.00017645 -0.20219 -0.00010792 534.2573667866379 140.5 0.1478 135.85 135.76 135.91 -4.6493 5 3 2 0 0 0 0.80521 1 27745 27745 10.824 5.0635 1 1494800 6926 26444 4198 4202 7250 7250 -0.032274478985755195 DKLYWLEFEKI 11 Unmodified _DKLYWLEFEKI_ 0 0 0 tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3984375 2 742.39521 1482.77587 NaN NaN NaN NaN NaN NaN NaN 149.69 1 149.69 149.19 150.19 0 0 0 0 0.23379 1 29968 29968 5.2969 0.76802 1 6927 26355 4199 4203 7251 7251 0.053790396344084 DKLYWLEFEKI 11 Unmodified _DKLYWLEFEKI_ 0 0 0 tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3930053710938 2 742.39521 1482.77587 NaN NaN NaN NaN NaN NaN NaN 150.56 1 150.56 150.06 151.06 0 0 0 0 0.21872 1 30144 30144 14.405 9.8765 1 6928 26355 4199 4203 7252 7252 0.053790396344084 DKLYWLEFEKI 11 Unmodified _DKLYWLEFEKI_ 0 0 0 tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.396484375 2 742.39521 1482.77587 NaN NaN NaN NaN NaN NaN NaN 152.66 1 147.39 146.89 147.89 -5.2669 0 0 0 0.23087 1 29599 29599 7.609 2.3121 1 6929 26355 4199 4203 7253 7253 0.053790396344084 DKLYWLEFEKI 11 Unmodified _DKLYWLEFEKI_ 0 0 0 tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3934936523438 2 742.39521 1482.77587 NaN NaN NaN NaN NaN NaN NaN 145.72 1 140.72 140.22 141.22 -5 0 0 0 0.23379 1 28185 28185 5.2969 0 1 6930 26355 4199 4203 7254 7254 0.053790396344084 DKMDESYDEI 10 Unmodified _DKMDESYDEI_ 0 0 0 REV__ENSG00000158014|ENST00000374276|SLC30A2 REV__ENSG00000158014|ENST00000374276|SLC30A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7628173828125 2 622.753001 1243.49145 NaN NaN NaN NaN NaN NaN NaN 165.74 1 165.74 165.24 166.24 0 0 0 0 0.22588 1 33668 33668 5.7319 0.83484 1 + 6931 17318 4200 4204 7255 7255 -0.12055753912250111 DKMENDFKEKY 11 Unmodified _DKMENDFKEKY_ 0 0 0 REV__ENSG00000078114|ENST00000377122|NEBL REV__ENSG00000078114|ENST00000377122|NEBL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 723.8408203125 2 723.832117 1445.64968 NaN NaN NaN NaN NaN NaN NaN 166.2 1 161.22 160.72 161.72 -4.9811 0 0 0 0.23429 1 32553 32553 4.897 0 1 + 6932 14374 4201 4205 7256 7256 -0.05531834933185564 DKMKRQKRKR 10 Unmodified _DKMKRQKRKR_ 0 0 0 ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant;nc|ENSG00000116539|Q9NR48|ASH1L ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 687.223876953125 2 687.417154 1372.81975 NaN NaN NaN NaN NaN NaN NaN 167.26 1 162.37 161.87 162.87 -4.8916 0 0 0 0.22588 1 32872 32872 5.2969 2.3016 1 6933 232 4202 4206 7257 7257 0.14825790370400682 DKMKRQKRKRK 11 Unmodified _DKMKRQKRKRK_ 0 0 0 ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant;nc|ENSG00000116539|Q9NR48|ASH1L ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 751.5812377929688 2 751.464635 1500.91472 NaN NaN NaN NaN NaN NaN NaN 172.4 1 167.61 167.11 168.11 -4.7898 0 0 0 0.22632 1 35121 35121 0 0 1 6934 232 4203 4207 7258 7258 0.18429723841586565 DKMQLEKLL 9 Unmodified _DKMQLEKLL_ 0 0 0 REV__nc|ENSG00000256553|A0A0B4J238|TRAV1-2 REV__nc|ENSG00000256553|A0A0B4J238|TRAV1-2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 373.1037292480469 3 373.21437 1116.62128 -0.23507 -8.773E-05 0.1901 7.0948E-05 -0.044965 -1.6781E-05 373.21439237051123 77.962 1.3559 74.499 73.862 75.218 -3.4633 84 37 4 0 0 0 0.87497 1 15113 15113 0.20686 0 1 12868000 + 6935 24296 4204 4208 7259 7259 0.06763511948201995 DKMQLEKLL 9 Unmodified _DKMQLEKLL_ 0 0 0 REV__nc|ENSG00000256553|A0A0B4J238|TRAV1-2 REV__nc|ENSG00000256553|A0A0B4J238|TRAV1-2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 373.21437 1116.62128 -0.053238 -1.9869E-05 -0.10131 -3.7812E-05 -0.15455 -5.7681E-05 373.21426819684433 74.747 0.709 74.747 74.394 75.103 0 0.17172 -0.00030336 NaN 0.20686 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6304500 + 6936 24296 4204 4208 0.06763511948201995 DKMQLEKLL 9 Unmodified _DKMQLEKLL_ 0 0 0 REV__nc|ENSG00000256553|A0A0B4J238|TRAV1-2 REV__nc|ENSG00000256553|A0A0B4J238|TRAV1-2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 373.21437 1116.62128 -0.0042622 -1.5907E-06 -0.11506 -4.2943E-05 -0.11932 -4.4533E-05 373.21429278968765 78.303 1.6879 74.536 73.86 75.548 -3.7664 -0.038366 -0.00031875 NaN 0.20686 84 47 4 NaN NaN NaN NaN 0 NaN NaN 0 12650000 + 6937 24296 4204 4208 0.06763511948201995 DKMQLEKLL 9 Unmodified _DKMQLEKLL_ 0 0 0 REV__nc|ENSG00000256553|A0A0B4J238|TRAV1-2 REV__nc|ENSG00000256553|A0A0B4J238|TRAV1-2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 373.21437 1116.62128 -0.66854 -0.00024951 0.62184 0.00023208 -0.046696 -1.7428E-05 373.21455190953685 78.176 1.4374 74.518 74.092 75.529 -3.6588 -0.057259 0.00050632 NaN 0.20686 87 40 4 NaN NaN NaN NaN 0 NaN NaN 0 8568600 + 6938 24296 4204 4208 0.06763511948201995 DKMSLHECFTD 11 Unmodified _DKMSLHECFTD_ 0 0 0 REV__ENSG00000100314|ENST00000216144|CABP7 REV__ENSG00000100314|ENST00000216144|CABP7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 663.0215454101562 2 663.278663 1324.54277 NaN NaN NaN NaN NaN NaN NaN 166.72 1 166.72 166.22 167.22 0 0 0 0 0.23476 1 33993 33993 4.5289 0.19963 1 + 6939 14690 4205 4209 7260 7260 -0.10651708419209172 DKMVDYNRY 9 Unmodified _DKMVDYNRY_ 0 0 0 REV__ENSG00000164919|ENST00000520468|COX6C REV__ENSG00000164919|ENST00000520468|COX6C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2743530273438 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 167.63 1 162.68 162.18 163.18 -4.948 0 0 0 0.23508 1 32996 32996 10.824 0.75 1 + 6940 17722 4206 4210 7261 7261 -0.054160101307388686 DKNAFAVNEA 10 Unmodified _DKNAFAVNEA_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2133483886719 3 360.176972 1077.50909 -0.35885 -0.00012925 0.33311 0.00011998 -0.025731 -9.2677E-06 360.17714426590715 18.197 0.27782 16.886 16.725 17.002 -1.3109 17 7 3 0 0 0 0.9068 1 2937 2937 10.899 8.1638 1 1389100 + 6941 18377 4207 4211 7262 7262 -0.02656625804434043 DKNAFAVNEA 10 Unmodified _DKNAFAVNEA_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.213134765625 3 360.176972 1077.50909 -0.39522 -0.00014235 0.39078 0.00014075 -0.0044404 -1.5993E-06 360.17709896445314 18.128 0.23318 16.856 16.73 16.964 -1.2722 17 6 3 0 0 0 0.70283 1 2707 2707 10.899 5.1155 1 946240 + 6942 18377 4207 4211 7263 7263 -0.02656625804434043 DKNAFAVNEA 10 Unmodified _DKNAFAVNEA_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 360.176972 1077.50909 -0.39522 -0.00014235 0.39078 0.00014075 -0.0044404 -1.5993E-06 360.17709896445314 18.128 0.23318 16.856 16.73 16.964 -1.2722 -0.050387 3.733E-05 NaN 10.899 17 6 3 NaN NaN NaN NaN 0 NaN NaN 0 946240 + 6943 18377 4207 4211 -0.02656625804434043 DKNDSYKFY 9 Unmodified _DKNDSYKFY_ 0 0 0 REV__ZNF639|p.F53_D54insKYS|1|0.05|ENSG00000121864|chr3:179329717-179329718|-/CAAGTACAG|inframe_insertion REV__ZNF639|p.F53_D54insKYS|1|0.05|ENSG00000121864|chr3:179329717-179329718|-/CAAGTACAG|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2529907226562 2 590.269478 1178.5244 NaN NaN NaN NaN NaN NaN NaN 147.05 1 147.05 146.55 147.55 0 0 0 0 0.23508 1 29412 29412 12.532 4.376 1 + 6944 25587 4208 4212 7264 7264 -0.05771759007234323 DKNDSYKFY 9 Unmodified _DKNDSYKFY_ 0 0 0 REV__ZNF639|p.F53_D54insKYS|1|0.05|ENSG00000121864|chr3:179329717-179329718|-/CAAGTACAG|inframe_insertion REV__ZNF639|p.F53_D54insKYS|1|0.05|ENSG00000121864|chr3:179329717-179329718|-/CAAGTACAG|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.270263671875 2 590.269478 1178.5244 NaN NaN NaN NaN NaN NaN NaN 141.71 1 137.07 136.57 137.57 -4.6493 0 0 0 0.23508 1 27998 27998 7.9102 1.187 1 + 6945 25587 4208 4212 7265 7265 -0.05771759007234323 DKNENIILI 9 Unmodified _DKNENIILI_ 0 0 0 tr|U7SSX1|U7SSX1_FUSNUNADPH-dependentFMNreductase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01406PE=4SV=1 tr|U7SSX1|U7SSX1_FUSNUNADPH-dependentFMNreductase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01406PE=4SV=1 tr|U7SSX1|U7SSX1_FUSNUNADPH-dependentFMNreductase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01406PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5508728027344 3 357.873001 1070.59717 -0.58651 -0.0002099 -3.2097 -0.0011487 -3.7963 -0.0013586 358.2066451548225 38.742 0.34659 36.192 36.05 36.396 -2.5491 7 4 2 0 0 0 0.68708 1 7167 7167 7.1017 1.699 1 447760 6946 26115 4209 4213 7266 7266 0.06469994786198185 DKNFLQIIK 9 Unmodified _DKNFLQIIK_ 0 0 0 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 374.54833984375 3 373.557125 1117.64954 -0.3105 -0.00011599 0.13666 5.1051E-05 -0.17384 -6.494E-05 373.5571377513566 55.755 0.67637 55.755 55.44 56.116 0 50 18 3 0 0 0 0.79239 1 10631 10631 2.086 0 1 8126300 + 6947 25144 4210 4214 7267 7267 0.09542577919796713 DKNFLQIIK 9 Unmodified _DKNFLQIIK_ 0 0 0 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 373.557125 1117.64954 -0.3105 -0.00011599 0.13666 5.1051E-05 -0.17384 -6.494E-05 373.5571377513566 55.755 0.67637 55.755 55.44 56.116 0 0.14916 0.00018417 NaN 2.086 50 18 3 NaN NaN NaN NaN 0 NaN NaN 0 8126300 + 6948 25144 4210 4214 0.09542577919796713 DKNFLQIIK 9 Unmodified _DKNFLQIIK_ 0 0 0 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 373.557125 1117.64954 -0.31419 -0.00011737 -0.10527 -3.9323E-05 -0.41946 -0.00015669 373.5570373032215 58.472 0.79852 55.562 55.203 56.001 -2.9105 -0.044665 -8.6954E-05 NaN 2.086 66 22 4 NaN NaN NaN NaN 0 NaN NaN 0 9711200 + 6949 25144 4210 4214 0.09542577919796713 DKNFLQIIK 9 Unmodified _DKNFLQIIK_ 0 0 0 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 373.557125 1117.64954 0.083682 3.126E-05 -0.45107 -0.0001685 -0.36739 -0.00013724 373.55689640904455 58.754 0.92371 55.503 55.135 56.059 -3.2517 -0.10359 -0.00047449 NaN 2.086 72 25 4 NaN NaN NaN NaN 0 NaN NaN 0 9647300 + 6950 25144 4210 4214 0.09542577919796713 DKNFLQIIK 9 Unmodified _DKNFLQIIK_ 0 0 0 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 373.557125 1117.64954 -0.58654 -0.00021911 0.28963 0.00010819 -0.29691 -0.00011091 373.5571710155365 58.81 0.80021 55.605 55.196 55.997 -3.2052 -0.00090177 0.0003556 NaN 2.086 62 22 4 NaN NaN NaN NaN 0 NaN NaN 0 7963400 + 6951 25144 4210 4214 0.09542577919796713 DKNKRKRRFRL 11 Unmodified _DKNKRKRRFRL_ 0 0 0 REV__nc|ENSG00000145451|O75311-2|GLRA3 REV__nc|ENSG00000145451|O75311-2|GLRA3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 758.948974609375 2 758.9684 1515.92225 NaN NaN NaN NaN NaN NaN NaN 171.22 1 166.43 165.93 166.93 -4.7898 0 0 0 0.2367 1 34798 34798 2.9952 2.6882 1 + 6952 24084 4211 4215 7268 7268 0.1849219943353546 DKNLRSGVRKY 11 Unmodified _DKNLRSGVRKY_ 0 0 0 ENST00000583350.1_1_18:14377547-14378720:-|nuORF;ENST00000518961.1_1_8:73944214-73958369:+|nuORF;nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1 ENST00000583350.1_1_18:14377547-14378720:-|nuORF ENST00000583350.1_1_18:14377547-14378720:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 668.46826171875 2 668.378217 1334.74188 NaN NaN NaN NaN NaN NaN NaN 166.43 1 161.64 161.14 162.14 -4.7898 0 0 0 0.22765 1 33436 33436 10.151 0.076642 1 6953 11514 4212 4216 7269 7269 0.0879005598603726 DKNMGPCLGF 10 Unmodified _DKNMGPCLGF_ 0 0 0 REV__LTR8_dup2971|chr17:8380695-8381392:+|3.615424572808221|0.2447948664736123|3.88|483.0|50|2|anti-sense REV__LTR8_dup2971|chr17:8380695-8381392:+|3.615424572808221|0.2447948664736123|3.88|483.0|50|2|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2619018554688 2 541.243895 1080.47324 0.21741 0.00011767 0.32372 0.00017521 0.54113 0.00029288 541.2440203349774 71.768 1.7771 71.768 71.142 72.919 0 108 50 3 0 0 0 0.72179 1 14102 14102 14.838 14.838 1 9948600 + 6954 23826 4213 4217 7270 7270 -0.0637812257728001 DKPDPVNDECI 11 Unmodified _DKPDPVNDECI_ 0 0 0 REV__ENSG00000127419|ENST00000264771|TMEM175 REV__ENSG00000127419|ENST00000264771|TMEM175 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7567749023438 2 622.77681 1243.53907 NaN NaN NaN NaN NaN NaN NaN 137.48 1 132.83 132.33 133.33 -4.6413 0 0 0 0.23018 1 27132 27132 8.1555 1.4324 1 + 6955 15886 4214 4218 7271 7271 -0.07296054921403083 DKPDTRAL 8 Unmodified _DKPDTRAL_ 0 0 0 REV__ENST00000558674.5_1_14:24566116-24567637:+|nuORF REV__ENST00000558674.5_1_14:24566116-24567637:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23370361328125 2 458.248349 914.482145 -0.35476 -0.00016257 0.18705 8.5717E-05 -0.16771 -7.6852E-05 458.2484135430283 39.925 0.63359 37.376 37.071 37.704 -2.5491 27 17 2 0 0 0 0.86749 1 7467 7467 21.747 0 1 819720 + 6956 14746 4215 4219 7272 7272 0.021483103750369992 DKPITIELH 9 Unmodified _DKPITIELH_ 0 0 0 REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1 REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27880859375 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 141.66 1 141.66 141.16 142.16 0 0 0 0 0.19657 1 28233 28233 4.897 0 1 + 6957 16626 4216 4220 7273 7273 0.05690012131753974 DKPKELFMS 9 Unmodified _DKPKELFMS_ 0 0 0 REV__CCSER1|p.T841M|1|0.17|ENSG00000184305|chr4:91598876-91598876|C/T|missense_variant REV__CCSER1|p.T841M|1|0.17|ENSG00000184305|chr4:91598876-91598876|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7809448242188 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 170.74 1 165.95 165.45 166.45 -4.7898 0 0 0 0.19698 1 34674 34674 0.37959 0.20759 1 + 6958 13318 4217 4221 7274 7274 0.004749635057351043 DKPLKKRKQDS 11 Unmodified _DKPLKKRKQDS_ 0 0 0 NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant;NIPBL|p.K603Sfs*11|2|0.29|ENSG00000164190|chr5:36984981-36984981|A/-|frameshift_variant NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 671.8931884765625 2 671.8937 1341.77285 NaN NaN NaN NaN NaN NaN NaN 167.21 1 162.26 161.76 162.76 -4.948 0 0 0 0.23018 1 32867 32867 8.1555 1.4324 1 6959 5523 4218 4222 7275 7275 0.11563209300265953 DKPSLNPNLP 10 Unmodified _DKPSLNPNLP_ 0 0 0 ENST00000557871.1_1_15:52214044-52217987:-|nuORF ENST00000557871.1_1_15:52214044-52217987:-|nuORF ENST00000557871.1_1_15:52214044-52217987:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7929077148438 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 154.34 1 149.12 148.62 149.62 -5.2209 0 0 0 0.22588 1 29924 29924 13.042 1.4022 1 6960 11258 4219 4223 7276 7276 0.03372824126381602 DKPSPNSENEQ 11 Unmodified _DKPSPNSENEQ_ 0 0 0 ENSG00000178691|ENST00000322652|SUZ12 ENSG00000178691|ENST00000322652|SUZ12 ENSG00000178691|ENST00000322652|SUZ12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7512817382812 2 622.773113 1243.53167 NaN NaN NaN NaN NaN NaN NaN 140.14 1 135.19 134.69 135.69 -4.952 0 0 0 0.23519 1 26968 26968 4.1895 0.59301 1 6961 6587 4220 4224 7277 7277 -0.08035071197468824 DKPSQISVMQQ 11 Unmodified _DKPSQISVMQQ_ 0 0 0 ZFYVE9|p.E921D|1|0.22|ENSG00000157077|chr1:52278508-52278508|G/T|missense_variant ZFYVE9|p.E921D|1|0.22|ENSG00000157077|chr1:52278508-52278508|G/T|missense_variant ZFYVE9|p.E921D|1|0.22|ENSG00000157077|chr1:52278508-52278508|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.74853515625 2 630.81627 1259.61799 0.42274 0.00026667 4.463 0.0028153 4.8858 0.003082 631.3196781236308 114.93 0.18236 110.37 110.29 110.48 -4.555 6 4 2 0 0 0 0.94841 1 22058 22058 2.086 0 1 2018700 6962 26600 4221 4225 7278 7278 -0.0014378289642991149 DKQEEHMKCY 10 Unmodified _DKQEEHMKCY_ 0 0 0 REV__ENSG00000153820|ENST00000392056|SPHKAP REV__ENSG00000153820|ENST00000392056|SPHKAP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23052978515625 3 437.521645 1309.54311 0.032997 1.4437E-05 0.43716 0.00019127 0.47015 0.0002057 437.52184989884535 37.959 0.27899 35.517 35.315 35.594 -2.4419 16 7 3 0 0 0 0.91149 1 6742 6742 3.5871 0 1 1855100 + 6963 17157 4222 4226 7279 7279 -0.09928288699325094 DKQLFDDHYL 10 Unmodified _DKQLFDDHYL_ 0 0 0 chr19:41727352-41769320|187|11.17|0.17|6.01|+|1|TE_info:MER65-int,MER65-int_dup834,ERV1,LTR,acceptor,+,41769320,41770124|CEACAM5,None|5 chr19:41727352-41769320|187|11.17|0.17|6.01|+|1|TE_info:MER65-int,MER65-int_dup834,ERV1,LTR,acceptor,+,41769320,41770124|CEACAM5,None|5 chr19:41727352-41769320|187|11.17|0.17|6.01|+|1|TE_info:MER65-int,MER65-int_dup834,ERV1,LTR,acceptor,+,41769320,41770124|CEACAM5,None|5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 431.8746032714844 3 431.875182 1292.60372 NaN NaN NaN NaN NaN NaN NaN 27.299 1 25.377 24.877 25.877 -1.9222 0 0 0 0.22588 1 4558 4558 1.7423 0.41263 1 6964 543 4223 4227 7280 7280 -0.03088112053092118 DKQLNVKEI 9 Unmodified _DKQLNVKEI_ 0 0 0 REV__tr|U7SUA0|U7SUA0_FUSNUCalcineurin-likephosphoesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01155PE=4SV=1 REV__tr|U7SUA0|U7SUA0_FUSNUCalcineurin-likephosphoesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01155PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77880859375 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 144.14 1 139.47 138.97 139.97 -4.6694 0 0 0 0.22193 1 28531 28531 17.113 0.96379 1 + 6965 25153 4224 4228 7281 7281 0.06869397160471635 DKQLREVTKS 10 Unmodified _DKQLREVTKS_ 0 0 0 REV__CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant REV__CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3009643554688 2 602.338227 1202.6619 NaN NaN NaN NaN NaN NaN NaN 132.97 1 132.97 132.47 133.47 0 0 0 0 0.22588 1 26297 26297 8.1555 0.54658 1 + 6966 13376 4225 4229 7282 7282 0.06867569592168365 DKQQQMIEKI 10 Unmodified _DKQQQMIEKI_ 0 0 0 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7576293945312 2 630.834462 1259.65437 NaN NaN NaN NaN NaN NaN NaN 156 1 151.22 150.72 151.72 -4.7791 0 0 0 0.22588 1 31012 31012 13.042 4.2971 1 6967 1424 4226 4230 7283 7283 0.03493094000259589 DKQRFRGMLWF 11 Unmodified _DKQRFRGMLWF_ 0 0 0 nc|ENSG00000133863|Q9BXT5|TEX15;TEX15|p.S2464Vfs*33|1|0.4|ENSG00000133863|chr8:30837745-30837745|T/-|frameshift_variant;ENSG00000133863|ENST00000643185|TEX15 nc|ENSG00000133863|Q9BXT5|TEX15 nc|ENSG00000133863|Q9BXT5|TEX15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3817138671875 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 145.03 1 145.03 144.53 145.53 0 0 0 0 0.23379 1 28984 28984 5.2969 2.3016 1 6968 3819 4227 4231 7284 7284 0.03335590493611562 DKQRFRGMLWF 11 Unmodified _DKQRFRGMLWF_ 0 0 0 nc|ENSG00000133863|Q9BXT5|TEX15;TEX15|p.S2464Vfs*33|1|0.4|ENSG00000133863|chr8:30837745-30837745|T/-|frameshift_variant;ENSG00000133863|ENST00000643185|TEX15 nc|ENSG00000133863|Q9BXT5|TEX15 nc|ENSG00000133863|Q9BXT5|TEX15 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3721923828125 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 138.28 1 133.36 132.86 133.86 -4.9216 0 0 0 0.23698 1 26588 26588 2.4985 0.84587 1 6969 3819 4227 4231 7285 7285 0.03335590493611562 DKQSRRPFHFL 11 Unmodified _DKQSRRPFHFL_ 0 0 0 REV__ENSG00000158683|ENST00000289672|PKD1L1 REV__ENSG00000158683|ENST00000289672|PKD1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 715.8865356445312 2 715.88621 1429.75787 NaN NaN NaN NaN NaN NaN NaN 178.22 1 178.22 177.72 178.72 0 0 0 0 0.22632 1 36921 36921 0.026206 0 1 + 6970 17342 4228 4232 7286 7286 0.060177622229275585 DKQSSPLPPP 10 Unmodified _DKQSSPLPPP_ 0 0 0 REV__MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant REV__MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2822875976562 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 90.855 1 86.995 86.495 87.495 -3.8595 0 0 0 0.22588 1 17778 17778 10.8 0.72558 1 + 6971 15119 4229 4233 7287 7287 0.020531352350417365 DKQTQNDMVT 10 Unmodified _DKQTQNDMVT_ 0 0 0 DDX59|p.L599M|1|0.18|ENSG00000118197|chr1:200644319-200644319|G/T|missense_variant DDX59|p.L599M|1|0.18|ENSG00000118197|chr1:200644319-200644319|G/T|missense_variant DDX59|p.L599M|1|0.18|ENSG00000118197|chr1:200644319-200644319|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2640991210938 2 590.269152 1178.52375 NaN NaN NaN NaN NaN NaN NaN 144.26 1 139.19 138.69 139.69 -5.0671 0 0 0 0.22588 1 27822 27822 8.7454 0.83525 1 6972 806 4230 4234 7288 7288 -0.05836921718605481 DKRDPEFVF 9 Unmodified _DKRDPEFVF_ 0 0 0 nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN nc|ENSG00000125912|Q969V3-2|NCLN nc|ENSG00000125912|Q969V3-2|NCLN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3343505859375 2 576.787838 1151.56112 0.29775 0.00017174 -3.3249 -0.0019178 -3.0272 -0.001746 577.2891723564467 136.91 0.16911 136.91 136.76 136.93 0 5 4 2 0 0 0 0.85111 1 27121 27121 6.7232 0.51738 1 3966600 6973 3404 4231 4235 7289 7289 -0.008594623906901688 DKRHKELHEEY 11 Unmodified _DKRHKELHEEY_ 0 0 0 REV__ENST00000488606.5_1_1:36921391-36923601:-|nuORF REV__ENST00000488606.5_1_1:36921391-36923601:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.379150390625 2 742.368047 1482.72154 NaN NaN NaN NaN NaN NaN NaN 115.81 1 115.81 115.31 116.31 0 0 0 0 0.2367 1 22796 22796 2.9952 0 1 + 6974 15506 4232 4236 7290 7290 -0.0005115946441947017 DKRHKELHEEY 11 Unmodified _DKRHKELHEEY_ 0 0 0 REV__ENST00000488606.5_1_1:36921391-36923601:-|nuORF REV__ENST00000488606.5_1_1:36921391-36923601:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3695678710938 2 742.368047 1482.72154 NaN NaN NaN NaN NaN NaN NaN 145.94 1 145.94 145.44 146.44 0 0 0 0 0.23429 1 29177 29177 4.897 0 1 + 6975 15506 4232 4236 7291 7291 -0.0005115946441947017 DKRHKELHEEY 11 Unmodified _DKRHKELHEEY_ 0 0 0 REV__ENST00000488606.5_1_1:36921391-36923601:-|nuORF REV__ENST00000488606.5_1_1:36921391-36923601:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.372314453125 2 742.368047 1482.72154 NaN NaN NaN NaN NaN NaN NaN 166.46 1 166.46 165.96 166.96 0 0 0 0 0.23476 1 33914 33914 4.5289 0.33936 1 + 6976 15506 4232 4236 7292 7292 -0.0005115946441947017 DKRHKELHEEY 11 Unmodified _DKRHKELHEEY_ 0 0 0 REV__ENST00000488606.5_1_1:36921391-36923601:-|nuORF REV__ENST00000488606.5_1_1:36921391-36923601:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3683471679688 2 742.368047 1482.72154 NaN NaN NaN NaN NaN NaN NaN 141.05 1 136.18 135.68 136.68 -4.8678 0 0 0 0.23429 1 27213 27213 4.897 0 1 + 6977 15506 4232 4236 7293 7293 -0.0005115946441947017 DKRKEKRRQKR 11 Unmodified _DKRKEKRRQKR_ 0 0 0 nc|ENSG00000132970|Q9UPY6-2|WASF3 nc|ENSG00000132970|Q9UPY6-2|WASF3 nc|ENSG00000132970|Q9UPY6-2|WASF3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 509.98193359375 3 509.981601 1526.92297 NaN NaN NaN NaN NaN NaN NaN 171.75 1 166.96 166.46 167.46 -4.7898 0 0 0 0.23698 1 34941 34941 0.36667 0.27183 1 6978 12328 4233 4237 7294 7294 0.1805899408257119 DKRKPPWVIWW 11 Unmodified _DKRKPPWVIWW_ 0 0 0 nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A;nc|ENSG00000168356|Q9UI33-2|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 504.2805480957031 3 504.282106 1509.82449 NaN NaN NaN NaN NaN NaN NaN 167.48 1 162.53 162.03 163.03 -4.948 0 0 0 0.22632 1 32949 32949 0.172 0 1 6979 5900 4234 4238 7295 7295 0.08996997784834093 DKRKSRRRRRR 11 Unmodified _DKRKSRRRRRR_ 0 0 0 REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3846435546875 2 785.490896 1568.96724 NaN NaN NaN NaN NaN NaN NaN 154.09 1 154.09 153.59 154.59 0 0 0 0 0.23698 1 30881 30881 0.96228 0.65524 1 + 6980 12951 4235 4239 7296 7296 0.20551443019417093 DKRKSRRRRRR 11 Unmodified _DKRKSRRRRRR_ 0 0 0 REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6890258789062 3 523.996356 1568.96724 0.18465 9.6759E-05 2.2099 0.001158 2.3946 0.0012547 524.3322348351885 147.59 0.17117 147.59 147.43 147.61 0 5 4 2 0 0 0 0.96195 1 29492 29492 0.92553 0.85227 1 2879800 + 6981 12951 4235 4239 7297 7297 0.20551443019417093 DKRKSRRRRRR 11 Unmodified _DKRKSRRRRRR_ 0 0 0 REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6981201171875 3 523.996356 1568.96724 0.18316 9.5976E-05 2.9003 0.0015198 3.0835 0.0016157 523.9988892055975 138.22 0.16971 138.22 138.08 138.25 0 6 4 2 0 0 0 0.96183 1 27436 27436 0.36667 0 1 2930800 + 6982 12951 4235 4239 7298 7298 0.20551443019417093 DKRKSRRRRRR 11 Unmodified _DKRKSRRRRRR_ 0 0 0 REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3806762695312 2 785.490896 1568.96724 0.4696 0.00036887 -2.6753 -0.0021015 -2.2057 -0.0017326 785.9913199062082 134.53 0.3577 134.53 134.35 134.71 0 11 9 2 0 0 0 0.96183 1 26608 26608 1.0715 0.76443 1 5700900 + 6983 12951 4235 4239 7299 7299 0.20551443019417093 DKRKSRRRRRR 11 Unmodified _DKRKSRRRRRR_ 0 0 0 REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4080810546875 2 785.490896 1568.96724 NaN NaN NaN NaN NaN NaN NaN 158.24 1 153.44 152.94 153.94 -4.7952 0 0 0 0.23698 1 31465 31465 1.1933 1.1933 1 + 6984 12951 4235 4239 7300 7300 0.20551443019417093 DKRKSRRRRRR 11 Unmodified _DKRKSRRRRRR_ 0 0 0 REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4058837890625 2 785.490896 1568.96724 NaN NaN NaN NaN NaN NaN NaN 160.68 1 155.88 155.38 156.38 -4.7952 0 0 0 0.23698 1 31954 31954 1.1933 0.88631 1 + 6985 12951 4235 4239 7301 7301 0.20551443019417093 DKRKSRRRRRR 11 Unmodified _DKRKSRRRRRR_ 0 0 0 REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3841552734375 2 785.490896 1568.96724 NaN NaN NaN NaN NaN NaN NaN 150.47 1 145.27 144.77 145.77 -5.1994 0 0 0 0.23698 1 29159 29159 1.1933 1.1933 1 + 6986 12951 4235 4239 7302 7302 0.20551443019417093 DKRKSRRRRRR 11 Unmodified _DKRKSRRRRRR_ 0 0 0 REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3757934570312 2 785.490896 1568.96724 NaN NaN NaN NaN NaN NaN NaN 145.84 1 140.84 140.34 141.34 -5 0 0 0 0.23698 1 28211 28211 1.0715 1.0715 1 + 6987 12951 4235 4239 7303 7303 0.20551443019417093 DKRKSRRRRRR 11 Unmodified _DKRKSRRRRRR_ 0 0 0 REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3731079101562 2 785.490896 1568.96724 NaN NaN NaN NaN NaN NaN NaN 161.21 1 155.96 155.46 156.46 -5.2526 0 0 0 0.23698 1 31285 31285 1.1933 0.88631 1 + 6988 12951 4235 4239 7304 7304 0.20551443019417093 DKRKSRRRRRR 11 Unmodified _DKRKSRRRRRR_ 0 0 0 REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6784057617188 3 523.996356 1568.96724 0.30415 0.00015938 -1.2611 -0.00066082 -0.95697 -0.00050145 524.3310269523673 139.1 0.20618 134.25 134.18 134.39 -4.8492 6 5 2 0 0 0 0.96215 1 26809 26809 0.064406 0 1 2109500 + 6989 12951 4235 4239 7305 7305 0.20551443019417093 DKRLFRFL 8 Unmodified _DKRLFRFL_ 0 0 0 REV__ENST00000436551.1_1_2:42160642-42160720:-|nuORF REV__ENST00000436551.1_1_2:42160642-42160720:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7886352539062 2 547.827101 1093.63965 NaN NaN NaN NaN NaN NaN NaN 154.68 1 149.39 148.89 149.89 -5.2854 0 0 0 0.21486 1 29995 29995 8.5933 1.8701 1 + 6990 21672 4236 4240 7306 7306 0.09657434705081869 DKRLRSECK 9 Unmodified _DKRLRSECK_ 0 0 0 KBTBD2-CYFIP1|1|fusion;ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1 KBTBD2-CYFIP1|1|fusion KBTBD2-CYFIP1|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 379.1945495605469 3 378.873118 1133.59753 -0.059928 -2.2705E-05 -0.95925 -0.00036344 -1.0192 -0.00038614 378.87269327295496 79.743 0.67517 75.938 75.646 76.321 -3.8048 35 18 3 0 0 0 0.88109 1 15076 15076 0.77653 0 1 2328300 6991 8012 4237 4241 7307 7307 0.036070912343802775 DKRLYNWS 8 Unmodified _DKRLYNWS_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2739868164062 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 141.27 1 136.28 135.78 136.78 -4.9877 0 0 0 0.21486 1 27201 27201 7.9102 0.62092 1 + 6992 15894 4238 4242 7308 7308 -0.001803118423140404 DKRPFFVKY 9 Unmodified _DKRPFFVKY_ 0 0 0 REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 400.34991455078125 3 400.557236 1198.64988 0.19977 8.002E-05 -0.70914 -0.00028405 -0.50936 -0.00020403 400.5569198562073 42.702 0.49657 42.702 42.422 42.919 0 25 13 2 0 0 0 0.8799 1 7958 7958 0.96228 0.0979 1 1358600 + 6993 12882 4239 4243 7309 7309 0.05849997639666071 DKRPFFVKY 9 Unmodified _DKRPFFVKY_ 0 0 0 REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 400.557236 1198.64988 -0.20377 -8.162E-05 -0.26284 -0.00010528 -0.4666 -0.0001869 400.55713140476905 45.671 0.62732 42.831 42.475 43.102 -2.8409 0.010251 0.00011666 NaN 0.96228 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2095300 + 6994 12882 4239 4243 0.05849997639666071 DKRPFFVKY 9 Unmodified _DKRPFFVKY_ 0 0 0 REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 400.557236 1198.64988 -0.03166 -1.2682E-05 -0.55141 -0.00022087 -0.58307 -0.00023355 400.55704443699955 45.754 0.58432 42.888 42.553 43.138 -2.8653 0.068079 -0.00023011 NaN 0.96228 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1357500 + 6995 12882 4239 4243 0.05849997639666071 DKRPFFVKY 9 Unmodified _DKRPFFVKY_ 0 0 0 REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 400.557236 1198.64988 -0.63296 -0.00025354 0.090628 3.6302E-05 -0.54233 -0.00021723 400.55730978120675 45.727 0.52812 42.861 42.537 43.065 -2.8665 0.040283 0.00054141 NaN 0.96228 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1460400 + 6996 12882 4239 4243 0.05849997639666071 DKRQDENLWG 10 Unmodified _DKRQDENLWG_ 0 0 0 REV__LTN1|p.S725Ifs*7|1|0.06|ENSG00000198862|chr21:28960696-28960697|-/ATGTTAAAAA|frameshift_variant REV__LTN1|p.S725Ifs*7|1|0.06|ENSG00000198862|chr21:28960696-28960697|-/ATGTTAAAAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7487182617188 2 630.802008 1259.58946 NaN NaN NaN NaN NaN NaN NaN 148.52 1 148.52 148.02 149.02 0 0 0 0 0.22588 1 29725 29725 9.3831 1.2276 1 + 6997 19465 4240 4244 7310 7310 -0.02994764481400125 DKRRPKKQEL 10 Unmodified _DKRRPKKQEL_ 0 0 0 REV__nc|ENSG00000106341|O96001-2|PPP1R17 REV__nc|ENSG00000106341|O96001-2|PPP1R17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 649.3554077148438 2 649.388585 1296.76262 NaN NaN NaN NaN NaN NaN NaN 164.57 1 164.57 164.07 165.07 0 0 0 0 0.22588 1 33291 33291 5.7319 1.203 1 + 6998 15045 4241 4245 7311 7311 0.12610646365692446 DKRRRLEEVKL 11 Unmodified _DKRRRLEEVKL_ 0 0 0 nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2396545410156 3 481.291441 1440.85249 0.12256 5.8988E-05 2.4112 0.0011605 2.5338 0.0012195 481.2924513412098 131.76 0.18079 126.96 126.87 127.05 -4.799 6 4 2 0 0 0 0.89092 1 25369 25369 0.026206 0 1 550570 6999 4794 4242 4246 7312 7312 0.1497027597424676 DKRRRRRRRE 10 Unmodified _DKRRRRRRRE_ 0 0 0 ENST00000495703.5_1_1:45808500-45809371:+|nuORF;nc|ENSG00000132773|Q96GM8-2|TOE1;ENSG00000132773|ENST00000372090|TOE1 ENST00000495703.5_1_1:45808500-45809371:+|nuORF ENST00000495703.5_1_1:45808500-45809371:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3800659179688 2 742.448697 1482.88284 NaN NaN NaN NaN NaN NaN NaN 166.68 1 166.68 166.18 167.18 0 0 0 0 0.22588 1 33979 33979 1.4819 0.15237 1 7000 3762 4243 4247 7313 7313 0.16071492202650006 DKRVAYQRV 9 Unmodified _DKRVAYQRV_ 0 0 0 ENSG00000135636|ENST00000410020|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-7|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923-3|DYSF;DYSF|p.F1960Lfs*6|1|0.23|ENSG00000135636|chr2:71679165-71679165|T/-|frameshift_variant;nc|ENSG00000135636|O75923-15|DYSF;DYSF|p.F1290Lfs*55|1|0.1|ENSG00000135636|chr2:71601522-71601522|T/-|frameshift_variant;DYSF|p.P1020Rfs*37|2|0.33|ENSG00000135636|chr2:71570621-71570621|C/-|frameshift_variant ENSG00000135636|ENST00000410020|DYSF ENSG00000135636|ENST00000410020|DYSF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 568.162109375 2 567.822547 1133.63054 NaN NaN NaN NaN NaN NaN NaN 169.24 1 169.24 168.74 169.74 0 0 0 0 0.23508 1 34726 34726 6.7232 0 1 7001 903 4244 4248 7314 7314 0.06907041348722487 DKRWNLIHY 9 Unmodified _DKRWNLIHY_ 0 0 0 nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant;ENST00000489023.5_1_2:210693994-210832362:+|nuORF nc|ENSG00000144406|Q8N2C7-4|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7802124023438 2 622.830372 1243.64619 NaN NaN NaN NaN NaN NaN NaN 137.51 1 132.67 132.17 133.17 -4.84 0 0 0 0.23508 1 26492 26492 12.532 3.1484 1 7002 4551 4245 4249 7315 7315 0.03411327865819658 DKRWRLNEQ 9 Unmodified _DKRWRLNEQ_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7818603515625 2 622.82836 1243.64217 NaN NaN NaN NaN NaN NaN NaN 137.06 1 132.42 131.92 132.92 -4.6413 0 0 0 0.23508 1 27047 27047 10.824 2.0785 1 + 7003 15487 4246 4250 7316 7316 0.03009238372078471 DKRYVTIRGGP 11 Unmodified _DKRYVTIRGGP_ 0 0 0 REV__ENST00000564844.1_1_16:87426873-87433248:+|nuORF REV__ENST00000564844.1_1_16:87426873-87433248:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7525024414062 2 631.354211 1260.69387 0.40326 0.0002546 -3.0733 -0.0019404 -2.6701 -0.0016858 631.3524018533848 136.09 0.17651 136.09 135.95 136.13 0 7 4 2 0 0 0 0.8952 1 26945 26945 18.373 2.224 1 1932400 + 7004 23100 4247 4251 7317 7317 0.0739498206596636 DKSDPNHPMY 10 Unmodified _DKSDPNHPMY_ 0 0 0 REV__CEP126|p.I527M|1|0.23|ENSG00000110318|chr11:101962616-101962616|A/G|missense_variant REV__CEP126|p.I527M|1|0.23|ENSG00000110318|chr11:101962616-101962616|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.27392578125 2 602.258588 1202.50262 NaN NaN NaN NaN NaN NaN NaN 142.78 1 137.88 137.38 138.38 -4.8982 0 0 0 0.22588 1 27551 27551 3.5965 0 1 + 7005 13374 4248 4252 7318 7318 -0.09052887027451106 DKSEKSIL 8 Unmodified _DKSEKSIL_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.I1115Tfs*203|1|0.24|ENSG00000167522|chr16:89283198-89283198|A/-|frameshift_variant;ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant;ANKRD11|p.D1104Mfs*214|1|0.28|ENSG00000167522|chr16:89283233-89283233|T/-|frameshift_variant ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2480163574219 2 460.258382 918.502212 0.047028 2.1645E-05 -0.65128 -0.00029976 -0.60426 -0.00027811 460.2580429140273 26.582 0.54762 24.659 24.436 24.984 -1.9222 24 15 2 0 0 0 0.5743 1 4417 4417 22.736 0 1 890390 7006 5813 4249 4253 7319 7319 0.03970061315010298 DKSELKAE 8 Unmodified _DKSELKAE_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000471482.5_1_2:172544095-172549436:+|nuORF;DYNC1I2|p.F272Lfs*47|1|0.14|ENSG00000077380|chr2:171726234-171726234|T/-|frameshift_variant nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2395324707031 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 67.176 1 63.849 63.349 64.349 -3.3268 0 0 0 0.21479 1 12662 12662 4.2837 0 1 7007 1558 4250 4254 7320 7320 0.0033318441827532297 DKSFLEHIY 9 Unmodified _DKSFLEHIY_ 0 0 0 REV__ENSG00000158470|ENST00000371711|B4GALT5 REV__ENSG00000158470|ENST00000371711|B4GALT5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3348999023438 2 576.290214 1150.56587 0.26907 0.00015506 3.6238 0.0020884 3.8929 0.0022434 576.2929596984369 139.93 0.17606 135.08 134.95 135.12 -4.8492 6 4 2 0 0 0 0.74655 1 26987 26987 6.7232 0 1 1475000 + 7008 17335 4251 4255 7321 7321 -0.0033857824791994062 DKSFMEESI 9 Unmodified _DKSFMEESI_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7842407226562 2 543.244615 1084.47468 0.52054 0.00028278 -3.4627 -0.0018811 -2.9421 -0.0015983 543.242664919919 159.16 0.32655 153.89 153.69 154.02 -5.2712 10 8 2 0 0 0 0.57447 1 30862 30862 14.838 2.3067 1 819700 + 7009 15903 4252 4256 7322 7322 -0.06418210007541347 DKSFQGFQ 8 Unmodified _DKSFQGFQ_ 0 0 0 REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7270202636719 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 165.69 1 165.69 165.19 166.19 0 0 0 0 0.21171 1 33654 33654 15.847 0 1 + 7010 13683 4253 4257 7323 7323 -0.03955665033322475 DKSLQESL 8 Unmodified _DKSLQESL_ 0 0 0 ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant;ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2401428222656 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 64.191 1 61.193 60.693 61.693 -2.9975 0 0 0 0.20135 1 12414 12414 24.021 1.2843 1 7011 1397 4254 4258 7324 7324 0.0033318441828669165 DKSMEWFT 8 Unmodified _DKSMEWFT_ 0 0 0 ENSG00000163806|ENST00000334056|SPDYA ENSG00000163806|ENST00000334056|SPDYA ENSG00000163806|ENST00000334056|SPDYA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2567749023438 2 522.228768 1042.44298 -0.55502 -0.00028985 1.7973 0.00093859 1.2423 0.00064874 522.2296588860974 35.264 0.69862 33.011 32.497 33.195 -2.2527 25 19 2 0 0 0 0.71876 1 6149 6149 11.64 3.047 1 1642800 7012 5466 4255 4259 7325 7325 -0.07654157970819142 DKSSFKPYSKG 11 Unmodified _DKSSFKPYSKG_ 0 0 0 ENSG00000183779|ENST00000331569|ZNF703 ENSG00000183779|ENST00000331569|ZNF703 ENSG00000183779|ENST00000331569|ZNF703 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7611694335938 2 622.319502 1242.62445 NaN NaN NaN NaN NaN NaN NaN 38.775 1 38.775 38.275 39.275 0 0 0 0 0.22632 1 7193 7193 0.172 0 1 7013 6869 4256 4260 7326 7326 0.012844783265336446 DKSSRLVRGY 10 Unmodified _DKSSRLVRGY_ 0 0 0 ENSG00000106479|ENST00000223210|ZNF862 ENSG00000106479|ENST00000223210|ZNF862 ENSG00000106479|ENST00000223210|ZNF862 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.256103515625 2 590.825286 1179.63602 0.2505 0.000148 0.21876 0.00012925 0.46926 0.00027725 590.8253937698817 15.382 0.41371 15.382 15.193 15.607 0 20 11 3 0 0 0 0.91149 1 2372 2372 3.5965 0.31518 1 4623700 7014 2386 4257 4261 7327 7327 0.0533872014057124 DKSVFRRAS 9 Unmodified _DKSVFRRAS_ 0 0 0 REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.274169921875 2 533.293622 1064.57269 NaN NaN NaN NaN NaN NaN NaN 144.45 1 139.39 138.89 139.89 -5.0671 0 0 0 0.22193 1 27870 27870 17.113 1.2657 1 + 7015 21069 4258 4262 7328 7328 0.042987794233113164 DKSWSFHRHKR 11 Unmodified _DKSWSFHRHKR_ 0 0 0 RBMX2|p.S299_H300insWSF|1|0.05|ENSG00000134597|chrX:130412776-130412777|-/TGGTCTTTT|inframe_insertion RBMX2|p.S299_H300insWSF|1|0.05|ENSG00000134597|chrX:130412776-130412777|-/TGGTCTTTT|inframe_insertion RBMX2|p.S299_H300insWSF|1|0.05|ENSG00000134597|chrX:130412776-130412777|-/TGGTCTTTT|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3878784179688 2 742.386908 1482.75926 NaN NaN NaN NaN NaN NaN NaN 140.52 1 135.87 135.37 136.37 -4.6493 0 0 0 0.23698 1 27742 27742 2.2828 0.95324 1 7016 12873 4259 4263 7329 7329 0.03719396311680612 DKTDTHLKE 9 Unmodified _DKTDTHLKE_ 0 0 0 nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3 nc|ENSG00000162643|Q8IWG1-2|DNAI3 nc|ENSG00000162643|Q8IWG1-2|DNAI3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77880859375 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 145.65 1 145.65 145.15 146.15 0 0 0 0 0.23508 1 29112 29112 13.042 2.9685 1 7017 5350 4260 4264 7330 7330 -0.004043566329301029 DKTEPPLMSW 10 Unmodified _DKTEPPLMSW_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000007350 REV__CON__ENSEMBL:ENSBTAP00000007350 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2882080078125 2 602.289356 1202.56416 NaN NaN NaN NaN NaN NaN NaN 149.05 1 143.86 143.36 144.36 -5.1894 0 0 0 0.22588 1 28867 28867 4.897 1.3005 1 + + 7018 13504 4261 4265 7331 7331 -0.029019553281614208 DKTLFVGLPP 10 Unmodified _DKTLFVGLPP_ 0 0 0 ENST00000489194.5_1_1:224418997-224455817:-|nuORF;nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-4|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL ENST00000489194.5_1_1:224418997-224455817:-|nuORF ENST00000489194.5_1_1:224418997-224455817:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.791259765625 2 543.813325 1085.6121 0.27159 0.00014769 1.4026 0.00076277 1.6742 0.00091046 544.3162050495712 142.04 0.17743 137.39 137.27 137.45 -4.6493 6 4 2 0 0 0 0.86078 1 28062 28062 4.897 3.4151 1 1379100 7019 4514 4262 4266 7332 7332 0.07271486654190085 DKTLRKKDKE 10 Unmodified _DKTLRKKDKE_ 0 0 0 nc|ENSG00000126012|P41229-4|KDM5C;KDM5C|p.L1399Wfs*5|2|0.16|ENSG00000126012|chrX:53193560-53193560|G/-|frameshift_variant;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;ENST00000497995.1_1_X:53244961-53245340:-|nuORF nc|ENSG00000126012|P41229-4|KDM5C nc|ENSG00000126012|P41229-4|KDM5C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7715454101562 2 630.867151 1259.71975 0.37539 0.00023682 -2.968 -0.0018724 -2.5926 -0.0016356 630.8628905427338 151.71 0.20686 146.48 146.36 146.57 -5.2365 6 5 2 0 0 0 0.90598 1 29387 29387 2.9952 0 1 2173300 7020 3413 4263 4267 7333 7333 0.10027831517618324 DKTLVRKNP 9 Unmodified _DKTLVRKNP_ 0 0 0 ENSG00000101323|ENST00000378789|HAO1 ENSG00000101323|ENST00000378789|HAO1 ENSG00000101323|ENST00000378789|HAO1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55029296875 3 357.548741 1069.62439 NaN NaN NaN NaN NaN NaN NaN 169.1 1 164.31 163.81 164.81 -4.7898 0 0 0 0.23508 1 34227 34227 2.4985 0.41248 1 7021 2057 4264 4268 7334 7334 0.09236523117237994 DKTLYKYFLRV 11 Unmodified _DKTLYKYFLRV_ 0 0 0 nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;GRM1|p.P1015Lfs*16|1|0.39|ENSG00000152822|chr6:146434251-146434251|C/-|frameshift_variant;ENSG00000152822|ENST00000282753|GRM1;ENST00000507005.1_1_6:146350692-146480734:+|nuORF nc|ENSG00000152822|Q13255-2|GRM1 nc|ENSG00000152822|Q13255-2|GRM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 723.2713012695312 2 723.411195 1444.80784 0.92371 0.00066822 2.5804 0.0018667 3.5041 0.0025349 723.9132214574623 167.07 0.19879 162.28 162.19 162.39 -4.7898 8 5 2 0 0 0 0.96132 1 33663 33663 4.897 0.36815 1 48273000 7022 4943 4265 4269 7335 7335 0.10322452108198377 DKTPEFLHV 9 Unmodified _DKTPEFLHV_ 0 0 0 ENSG00000078114|ENST00000377122|NEBL ENSG00000078114|ENST00000377122|NEBL ENSG00000078114|ENST00000377122|NEBL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7743530273438 2 543.284931 1084.55531 0.27422 0.00014898 0.2098 0.00011398 0.48402 0.00026296 543.2850376273061 131.86 0.17284 127.06 126.98 127.15 -4.799 6 4 2 0 0 0 0.55979 1 25386 25386 15.847 0.5987 1 639990 7023 1568 4266 4270 7336 7336 0.0164143909764789 DKTRDYRSY 9 Unmodified _DKTRDYRSY_ 0 0 0 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2732543945312 2 602.291276 1202.568 NaN NaN NaN NaN NaN NaN NaN 144.49 1 139.82 139.32 140.32 -4.6694 0 0 0 0.23508 1 28614 28614 11.64 3.7301 1 + 7024 14454 4267 4271 7337 7337 -0.025181495101151086 DKTYFKNYI 9 Unmodified _DKTYFKNYI_ 0 0 0 REV__tr|U7T3I6|U7T3I6_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00421PE=4SV=1 REV__tr|U7T3I6|U7T3I6_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00421PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 398.18096923828125 3 397.873001 1190.59717 -0.69614 -0.00027698 0.94626 0.00037649 0.25012 9.9515E-05 397.8733745783227 82.208 0.58747 78.51 78.246 78.833 -3.6985 24 16 2 0 0 0 0.88109 1 15643 15643 0.77653 0 1 1319700 + 7025 25359 4268 4272 7338 7338 0.009499947861968394 DKVAPTVSV 9 Unmodified _DKVAPTVSV_ 0 0 0 REV__ENSG00000138785|ENST00000340139|INTS12 REV__ENSG00000138785|ENST00000340139|INTS12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.21978759765625 2 458.260925 914.507297 0.31167 0.00014282 -0.087098 -3.9914E-05 0.22457 0.00010291 458.26082322508523 122.08 0.53571 117.55 117.26 117.8 -4.5305 21 14 2 0 0 0 0.64382 1 23448 23448 10.074 2.1638 1 1177600 + 7026 16491 4269 4273 7339 7339 0.04662365177614447 DKVEPTSNCAQ 11 Unmodified _DKVEPTSNCAQ_ 0 0 0 REV__CGNL1|p.S607P|1|0.06|ENSG00000128849|chr15:57451515-57451515|T/C|missense_variant REV__CGNL1|p.S607P|1|0.06|ENSG00000128849|chr15:57451515-57451515|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 397.90289306640625 3 397.848527 1190.52375 NaN NaN NaN NaN NaN NaN NaN 16.205 1 16.205 15.705 16.705 0 0 0 0 0.23698 1 2510 2510 1.3296 0 1 + 7027 13395 4270 4274 7340 7340 -0.06388921718598795 DKVKLELKV 9 Unmodified _DKVKLELKV_ 0 0 0 ENST00000543205.1_1_12:122762601-122763649:-|nuORF;nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1 ENST00000543205.1_1_12:122762601-122763649:-|nuORF ENST00000543205.1_1_12:122762601-122763649:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5552062988281 3 357.897258 1070.66995 -0.019916 -7.128E-06 0.414 0.00014817 0.39408 0.00014104 357.89743648716853 45.243 0.17751 42.378 42.307 42.484 -2.8653 7 4 2 0 0 0 0.882 1 8198 8198 0.62683 0 1 313720 7028 3636 4271 4275 7341 7341 0.1374374857962266 DKVNEFLAF 9 Unmodified _DKVNEFLAF_ 0 0 0 ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant;ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant;ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.V722Sfs*7|1|0.25|ENSG00000188994|chr6:87255786-87255787|-/A|frameshift_variant ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.282958984375 2 541.779482 1081.54441 0.096667 5.2372E-05 -1.9166 -0.0010384 -1.8199 -0.00098598 541.777297219494 72.618 0.287 69.308 69.132 69.419 -3.3107 11 7 2 0 0 0 0.74858 1 14148 14148 12.241 0 1 1184300 7029 7211 4272 4276 7342 7342 0.0069003672338112665 DKVQQRALT 9 Unmodified _DKVQQRALT_ 0 0 0 REV__KLHL1|p.L143Wfs*32|1|0.54|ENSG00000150361|chr13:70107277-70107277|T/-|frameshift_variant REV__KLHL1|p.L143Wfs*32|1|0.54|ENSG00000150361|chr13:70107277-70107277|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 529.7821655273438 2 529.80128 1057.58801 NaN NaN NaN NaN NaN NaN NaN 142.55 1 142.55 142.05 143.05 0 0 0 0 0.23277 1 28423 28423 13.906 1.6654 1 + 7030 23723 4273 4277 7343 7343 0.06151646220496332 DKVSWHSEY 9 Unmodified _DKVSWHSEY_ 0 0 0 RBMX2|p.K169Rfs*26|1|0.25|ENSG00000134597|chrX:130412378-130412378|A/-|frameshift_variant;ENSG00000134597|ENST00000305536|RBMX2 RBMX2|p.K169Rfs*26|1|0.25|ENSG00000134597|chrX:130412378-130412378|A/-|frameshift_variant RBMX2|p.K169Rfs*26|1|0.25|ENSG00000134597|chrX:130412378-130412378|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3299560546875 2 575.76182 1149.50909 0.58519 0.00033693 -0.53039 -0.00030538 0.054799 3.1551E-05 575.7614961456408 44.836 0.41835 44.836 44.605 45.023 0 22 11 3 0 0 0 0.82765 1 8452 8452 9.3831 7.9012 1 2644200 7031 3864 4274 4278 7344 7344 -0.05968625804416661 DKVSYRWLL 9 Unmodified _DKVSYRWLL_ 0 0 0 THBS4|p.F884L|1|0.36|ENSG00000113296|chr5:80080043-80080043|T/C|missense_variant THBS4|p.F884L|1|0.36|ENSG00000113296|chr5:80080043-80080043|T/C|missense_variant THBS4|p.F884L|1|0.36|ENSG00000113296|chr5:80080043-80080043|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2688598632812 2 590.329673 1178.64479 NaN NaN NaN NaN NaN NaN NaN 154.06 1 149.29 148.79 149.79 -4.7684 0 0 0 0.23508 1 30618 30618 10.824 0 1 7032 25844 4275 4279 7345 7345 0.0626169377703718 DKVVCDCVNCY 11 Unmodified _DKVVCDCVNCY_ 0 0 0 REV__ENSG00000146007|ENST00000274712|ZMAT2 REV__ENSG00000146007|ENST00000274712|ZMAT2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7713623046875 2 630.756509 1259.49846 NaN NaN NaN NaN NaN NaN NaN 112.83 1 112.83 112.33 113.33 0 0 0 0 0.2367 1 22189 22189 2.9952 1.151 1 + 7033 16866 4276 4280 7346 7346 -0.12090435837012592 DKVYHPETG 9 Unmodified _DKVYHPETG_ 0 0 0 nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7 nc|ENSG00000083223|Q5VYS8-4|TUT7 nc|ENSG00000083223|Q5VYS8-4|TUT7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6969604492188 2 523.251089 1044.48762 0.17193 8.9962E-05 0.87731 0.00045905 1.0492 0.00054902 523.2511350860769 31.228 0.87877 29.111 28.399 29.278 -2.1167 33 24 3 0 0 0 0.42289 1 5667 5667 25.399 0 1 1132700 7034 1651 4277 4281 7347 7347 -0.032840108331583906 DKVYHPETG 9 Unmodified _DKVYHPETG_ 0 0 0 nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7 nc|ENSG00000083223|Q5VYS8-4|TUT7 nc|ENSG00000083223|Q5VYS8-4|TUT7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6972045898438 2 523.251089 1044.48762 0.56204 0.00029409 0.38429 0.00020108 0.94633 0.00049517 523.2508982965031 31.125 0.94563 28.977 28.355 29.3 -2.1483 47 26 3 0 0 0 0.42289 1 5368 5368 25.399 0 1 1030500 7035 1651 4277 4281 7348 7348 -0.032840108331583906 DKWIGGSPP 9 Unmodified _DKWIGGSPP_ 0 0 0 GABBR1|p.A575Sfs*2|3|0.31|ENSG00000204681|chr6:29609366-29609367|-/G|frameshift_variant;nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;nc|ENSG00000204681|Q9UBS5-4|GABBR1;ENSG00000204681|ENST00000377034|GABBR1 GABBR1|p.A575Sfs*2|3|0.31|ENSG00000204681|chr6:29609366-29609367|-/G|frameshift_variant GABBR1|p.A575Sfs*2|3|0.31|ENSG00000204681|chr6:29609366-29609367|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7207336425781 2 478.745442 955.476331 NaN NaN NaN NaN NaN NaN NaN 21.456 1 19.982 19.482 20.482 -1.4742 0 0 0 0.1599 1 3629 3629 29.082 2.1979 1 7036 7605 4278 4282 7349 7349 -0.003187881366102374 DKWINPKW 8 Unmodified _DKWINPKW_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-3|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-3|WDFY4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7913208007812 2 543.790184 1085.56581 NaN NaN NaN NaN NaN NaN NaN 174.35 1 169.46 168.96 169.96 -4.8916 0 0 0 0.21486 1 34707 34707 8.5933 0.68312 1 + 7037 24031 4279 4283 7350 7350 0.026454665427536384 DKWIWLIL 8 Unmodified _DKWIWLIL_ 0 0 0 REV__ENSG00000183695|ENST00000329773|MRGPRX2 REV__ENSG00000183695|ENST00000329773|MRGPRX2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7897338867188 2 543.820953 1085.62735 NaN NaN NaN NaN NaN NaN NaN 147.45 1 142.39 141.89 142.89 -5.0595 0 0 0 0.21486 1 28544 28544 12.532 0.29089 1 + 7038 18853 4280 4284 7351 7351 0.08796398242043324 DKWPRPRERAK 11 Unmodified _DKWPRPRERAK_ 0 0 0 REV__ITPKC|p.R507W|1|0.2|ENSG00000086544|chr19:40733209-40733209|C/T|missense_variant REV__ITPKC|p.R507W|1|0.2|ENSG00000086544|chr19:40733209-40733209|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 719.98779296875 2 719.904934 1437.79531 0.42838 0.0003084 2.724 0.001961 3.1524 0.0022694 720.4108894261059 166.08 0.1747 161.1 161.02 161.19 -4.9811 5 4 2 0 0 0 0.96077 1 32504 32504 7.1017 1.3699 1 10725000 + 7039 23686 4281 4285 7352 7352 0.09392853488520814 DKWQRRRWLRP 11 Unmodified _DKWQRRRWLRP_ 0 0 0 nc|ENSG00000105618|Q8WWY3-2|PRPF31 nc|ENSG00000105618|Q8WWY3-2|PRPF31 nc|ENSG00000105618|Q8WWY3-2|PRPF31 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2797241210938 3 532.970925 1595.89095 0.10163 5.4164E-05 -3.8091 -0.0020301 -3.7074 -0.001976 533.3026619393825 158.99 0.31746 158.99 158.85 159.16 0 10 8 2 0 0 0 0.82427 1 31925 31925 0.40827 0.31342 1 1266400 7040 12272 4282 4286 7353 7353 0.11683626399440072 DKYEGRYR 8 Unmodified _DKYEGRYR_ 0 0 0 REV__ENSG00000136854|ENST00000373299|STXBP1 REV__ENSG00000136854|ENST00000373299|STXBP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7714233398438 2 543.76998 1085.52541 NaN NaN NaN NaN NaN NaN NaN 174.08 1 169.19 168.69 169.69 -4.8845 0 0 0 0.21486 1 34578 34578 8.5933 0.68312 1 + 7041 16355 4283 4287 7354 7354 -0.013934998476770488 DKYELESY 8 Unmodified _DKYELESY_ 0 0 0 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.677734375 2 523.73748 1045.46041 NaN NaN NaN NaN NaN NaN NaN 139.35 1 134.5 134 135 -4.8492 0 0 0 0.21486 1 26861 26861 5.2307 0 1 7042 25984 4284 4288 7355 7355 -0.06050539164175461 DKYELESY 8 Unmodified _DKYELESY_ 0 0 0 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.69775390625 2 523.73748 1045.46041 NaN NaN NaN NaN NaN NaN NaN 139.37 1 134.52 134.02 135.02 -4.8492 0 0 0 0.21486 1 26867 26867 5.2307 0 1 7043 25984 4284 4288 7356 7356 -0.06050539164175461 DKYLEIVHA 9 Unmodified _DKYLEIVHA_ 0 0 0 ENSG00000144648|ENST00000422265|ACKR2 ENSG00000144648|ENST00000422265|ACKR2 ENSG00000144648|ENST00000422265|ACKR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.791748046875 2 544.292756 1086.57096 0.33915 0.0001846 -3.0264 -0.0016472 -2.6872 -0.0014626 544.7909161520731 150.37 0.17148 150.37 150.22 150.39 0 6 4 2 0 0 0 0.8319 1 30096 30096 4.3292 2.0265 1 1435800 7044 4565 4285 4289 7357 7357 0.031137256146848813 DKYLRTVRE 9 Unmodified _DKYLRTVRE_ 0 0 0 REV__nc|ENSG00000092871|Q8WZ73-3|RFFL REV__nc|ENSG00000092871|Q8WZ73-3|RFFL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2759399414062 2 590.327662 1178.64077 NaN NaN NaN NaN NaN NaN NaN 130.22 1 130.22 129.72 130.72 0 0 0 0 0.23508 1 25736 25736 7.609 1.8771 1 + 7045 14590 4286 4290 7358 7358 0.05859604283318731 DKYRVEKLE 9 Unmodified _DKYRVEKLE_ 0 0 0 nc|ENSG00000290359|Q0D2H9|GOLGA8DP;ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000183629|ENST00000525590|GOLGA8G nc|ENSG00000290359|Q0D2H9|GOLGA8DP nc|ENSG00000290359|Q0D2H9|GOLGA8DP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2564086914062 2 590.322045 1178.62954 NaN NaN NaN NaN NaN NaN NaN 137.69 1 137.69 137.19 138.19 0 0 0 0 0.23277 1 27314 27314 13.906 3.0821 1 7046 4974 4287 4291 7359 7359 0.04736782189183941 DKYTGHIDP 9 Unmodified _DKYTGHIDP_ 0 0 0 REV__CON__Q95121 REV__CON__Q95121 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.696533203125 2 523.251089 1044.48762 0.22944 0.00012005 -0.19333 -0.00010116 0.036108 1.8893E-05 523.2509273931875 28.968 0.58838 28.968 28.81 29.398 0 27 16 2 0 0 0 0.58699 1 5189 5189 25.399 6.1423 1 1802600 + + 7047 13558 4288 4292 7360 7360 -0.032840108331583906 DKYYGCNEC 9 Unmodified _DKYYGCNEC_ 0 0 0 nc|ENSG00000196458|Q86T29-2|ZNF605;ENSG00000196458|ENST00000360187|ZNF605 nc|ENSG00000196458|Q86T29-2|ZNF605 nc|ENSG00000196458|Q86T29-2|ZNF605 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.787353515625 2 547.699517 1093.38448 NaN NaN NaN NaN NaN NaN NaN 155.55 1 150.29 149.79 150.79 -5.2526 0 0 0 0.23508 1 30164 30164 4.3292 1.0479 1 7048 7269 4289 4293 7361 7361 -0.15847582607625554 DLAAGNHPDQG 11 Unmodified _DLAAGNHPDQG_ 0 0 0 nc|ENSG00000293134|O15428|PIN1P1 nc|ENSG00000293134|O15428|PIN1P1 nc|ENSG00000293134|O15428|PIN1P1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.79296875 2 547.746702 1093.47885 0.37387 0.00020478 -0.30865 -0.00016906 0.065215 3.5721E-05 547.7464179524089 117.63 0.9086 113.12 112.79 113.7 -4.502 54 25 3 0 0 0 0.59457 1 23270 23270 18.373 1.2602 1 6636100 7049 12665 4290 4294 7362 7362 -0.06414984469643059 DLAAGNHPDQG 11 Unmodified _DLAAGNHPDQG_ 0 0 0 nc|ENSG00000293134|O15428|PIN1P1 nc|ENSG00000293134|O15428|PIN1P1 nc|ENSG00000293134|O15428|PIN1P1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7745971679688 2 547.746702 1093.47885 0.44707 0.00024488 -0.56532 -0.00030965 -0.11825 -6.477E-05 547.7465072043548 117.81 0.85033 113.2 112.85 113.7 -4.6106 54 23 3 0 0 0 0.51025 1 22568 22568 22.658 4.5117 1 5564900 7050 12665 4290 4294 7363 7363 -0.06414984469643059 DLADNTQSNWP 11 Unmodified _DLADNTQSNWP_ 0 0 0 REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1 REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.768798828125 2 630.778199 1259.54184 NaN NaN NaN NaN NaN NaN NaN 114.21 1 109.74 109.24 110.24 -4.4726 0 0 0 0.23476 1 22505 22505 4.5289 0 1 + 7051 25321 4291 4295 7364 7364 -0.07754463472247153 DLAEEFCTLWY 11 Unmodified _DLAEEFCTLWY_ 0 0 0 REV__ENSG00000157881|ENST00000378466|PANK4 REV__ENSG00000157881|ENST00000378466|PANK4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2491760253906 3 463.872561 1388.59585 -0.17028 -7.8989E-05 0.23945 0.00011108 0.069173 3.2087E-05 463.872741533337 80.386 0.80399 76.71 76.247 77.051 -3.676 75 22 5 0 0 0 0.66106 1 15279 15279 0.026206 0 1 7085100 + 7052 17312 4292 4296 7365 7365 -0.08290007364871599 DLAGAAAPLY 10 Unmodified _DLAGAAAPLY_ 0 0 0 REV__ENST00000508448.5_1_4:41937256-41937487:+|nuORF REV__ENST00000508448.5_1_4:41937256-41937487:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2546081542969 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 57.77 1 54.859 54.359 55.359 -2.9105 0 0 0 0.22588 1 11086 11086 10.824 0.64053 1 + 7053 22472 4293 4297 7366 7366 0.009820786605587273 DLAGGSLHDY 10 Unmodified _DLAGGSLHDY_ 0 0 0 ENSG00000213203|ENST00000307194|GIMAP1 ENSG00000213203|ENST00000307194|GIMAP1 ENSG00000213203|ENST00000307194|GIMAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.685546875 2 524.240721 1046.46689 -0.38111 -0.00019979 -0.072741 -3.8134E-05 -0.45385 -0.00023793 524.2406200561809 53.267 0.34883 50.384 50.283 50.632 -2.8837 13 9 2 0 0 0 0.871 1 10152 10152 10.074 2.7847 1 792930 7054 7688 4294 4298 7367 7367 -0.054486012128108996 DLAGTRPW 8 Unmodified _DLAGTRPW_ 0 0 0 REV__ENST00000538804.5_1_12:120644448-120647718:+|nuORF REV__ENST00000538804.5_1_12:120644448-120647718:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2393798828125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 150.05 1 150.05 149.55 150.55 0 0 0 0 0.21486 1 30040 30040 4.756 0.42677 1 + 7055 22844 4295 4299 7368 7368 0.00036345066178000707 DLAKKYVCTY 10 Unmodified _DLAKKYVCTY_ 0 0 0 nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant nc|ENSG00000187627|P0DJD0|RGPD1 nc|ENSG00000187627|P0DJD0|RGPD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2742309570312 2 602.307549 1202.60055 NaN NaN NaN NaN NaN NaN NaN 121.29 1 121.29 120.79 121.79 0 0 0 0 0.22588 1 23908 23908 6.7232 0.99131 1 7056 6979 4296 4300 7369 7369 0.00734921568550817 DLALLDDKY 9 Unmodified _DLALLDDKY_ 0 0 0 REV__LAPTM4A|p.F175Lfs*5|2|0.2|ENSG00000068697|chr2:20034970-20034970|A/-|frameshift_variant REV__LAPTM4A|p.F175Lfs*5|2|0.2|ENSG00000068697|chr2:20034970-20034970|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2841186523438 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 142.66 1 137.77 137.27 138.27 -4.8982 0 0 0 0.23508 1 27529 27529 11.64 1.5664 1 + 7057 14231 4297 4301 7370 7370 0.009303131409069465 DLANSHSW 8 Unmodified _DLANSHSW_ 0 0 0 ENST00000326474.4_2_3:159944631-159944829:+|nuORF ENST00000326474.4_2_3:159944631-159944829:+|nuORF ENST00000326474.4_2_3:159944631-159944829:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.249755859375 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 104.44 1 100.39 99.886 100.89 -4.0543 0 0 0 0.21452 1 20084 20084 13.508 0 1 7058 8745 4298 4302 7371 7371 -0.06317122210191428 DLASREWLP 9 Unmodified _DLASREWLP_ 0 0 0 nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;nc|ENSG00000088812|O75882-3|ATRN nc|ENSG00000088812|O75882-2|ATRN nc|ENSG00000088812|O75882-2|ATRN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7935180664062 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 49.815 1 49.815 49.315 50.315 0 0 0 0 0.22621 1 9421 9421 15.847 2.8047 1 7059 1734 4299 4303 7372 7372 0.01120554954900399 DLASREWLP 9 Unmodified _DLASREWLP_ 0 0 0 nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;nc|ENSG00000088812|O75882-3|ATRN nc|ENSG00000088812|O75882-2|ATRN nc|ENSG00000088812|O75882-2|ATRN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7825317382812 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 52.887 1 50.003 49.503 50.503 -2.8837 0 0 0 0.22193 1 10069 10069 17.113 0.96379 1 7060 1734 4299 4303 7373 7373 0.01120554954900399 DLASREWLP 9 Unmodified _DLASREWLP_ 0 0 0 nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;nc|ENSG00000088812|O75882-3|ATRN nc|ENSG00000088812|O75882-2|ATRN nc|ENSG00000088812|O75882-2|ATRN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7810668945312 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 174.25 1 169.46 168.96 169.96 -4.7898 0 0 0 0.19638 1 35591 35591 0.029283 0.016017 1 7061 1734 4299 4303 7374 7374 0.01120554954900399 DLAVKLLGQ 9 Unmodified _DLAVKLLGQ_ 0 0 0 REV__DACH2|p.I497Kfs*24|1|0.17|ENSG00000126733|chrX:86813216-86813217|-/AG|frameshift_variant REV__DACH2|p.I497Kfs*24|1|0.17|ENSG00000126733|chrX:86813216-86813217|-/AG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7235412597656 2 478.792392 955.570232 -0.2777 -0.00013296 0.47041 0.00022523 0.19271 9.2269E-05 478.7925428494874 92.503 0.5581 92.503 92.191 92.749 0 22 15 2 0 0 0 0.54076 1 18109 18109 17.113 0 1 1595800 + 7062 13636 4300 4304 7375 7375 0.09066930965673237 DLAYLMHHFG 10 Unmodified _DLAYLMHHFG_ 0 0 0 ENSG00000138867|ENST00000435822|GUCD1;nc|ENSG00000138867|Q96NT3|GUCD1;nc|ENSG00000138867|Q96NT3-3|GUCD1;ENST00000468170.1_1_22:24943827-24950959:-|nuORF;ENST00000490922.1_1_22:24936902-24943992:-|nuORF ENSG00000138867|ENST00000435822|GUCD1 ENSG00000138867|ENST00000435822|GUCD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.28759765625 2 602.284408 1202.55426 NaN NaN NaN NaN NaN NaN NaN 164.27 1 159.21 158.71 159.71 -5.0648 0 0 0 0.22588 1 32021 32021 6.7232 1.4263 1 7063 4216 4301 4305 7376 7376 -0.03891098542908367 DLCDAHNQE 9 Unmodified _DLCDAHNQE_ 0 0 0 REV__nc|ENSG00000165671|Q96L73-2|NSD1 REV__nc|ENSG00000165671|Q96L73-2|NSD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2616577148438 2 522.706188 1043.39782 0.18496 9.6677E-05 3.8393 0.0020068 4.0242 0.0021035 523.210965661125 117.06 0.2115 117.06 116.99 117.2 0 6 5 2 0 0 0 0.85913 1 23048 23048 6.2058 2.2614 1 1621700 + 7064 17793 4302 4306 7377 7377 -0.12214008504020057 DLCLSALQPED 11 Unmodified _DLCLSALQPED_ 0 0 0 REV__nc|ENSG00000064726|Q9H0C5-2|BTBD1 REV__nc|ENSG00000064726|Q9H0C5-2|BTBD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2935791015625 2 602.281728 1202.5489 NaN NaN NaN NaN NaN NaN NaN 153.38 1 148.16 147.66 148.66 -5.2209 0 0 0 0.23379 1 29727 29727 5.2969 0.96765 1 + 7065 13216 4303 4307 7378 7378 -0.0442686691601466 DLCMHNDDC 9 Unmodified _DLCMHNDDC_ 0 0 0 REV__DSG4|p.T740Qfs*76|1|0.34|ENSG00000175065|chr18:31411307-31411307|G/-|frameshift_variant REV__DSG4|p.T740Qfs*76|1|0.34|ENSG00000175065|chr18:31411307-31411307|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2653198242188 2 533.175352 1064.33615 NaN NaN NaN NaN NaN NaN NaN 161.87 1 157.08 156.58 157.58 -4.7898 0 0 0 0.23508 1 32194 32194 2.0598 0 1 + 7066 13754 4304 4308 7379 7379 -0.1934439951917284 DLCMHNDDC 9 Unmodified _DLCMHNDDC_ 0 0 0 REV__DSG4|p.T740Qfs*76|1|0.34|ENSG00000175065|chr18:31411307-31411307|G/-|frameshift_variant REV__DSG4|p.T740Qfs*76|1|0.34|ENSG00000175065|chr18:31411307-31411307|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2753295898438 2 533.175352 1064.33615 NaN NaN NaN NaN NaN NaN NaN 163.37 1 158.33 157.83 158.83 -5.0446 0 0 0 0.19632 1 31789 31789 0.0033805 0 1 + 7067 13754 4304 4308 7380 7380 -0.1934439951917284 DLCQFDHGNDP 11 Unmodified _DLCQFDHGNDP_ 0 0 0 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7518310546875 2 630.751127 1259.4877 NaN NaN NaN NaN NaN NaN NaN 133.09 1 128.24 127.74 128.74 -4.8527 0 0 0 0.23476 1 25567 25567 4.5289 0.93237 1 7068 1799 4305 4309 7381 7381 -0.1316637889544836 DLCSELEACDY 11 Unmodified _DLCSELEACDY_ 0 0 0 REV__nc|ENSG00000162006|Q96KJ4|MSLNL REV__nc|ENSG00000162006|Q96KJ4|MSLNL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7703247070312 2 630.741579 1259.4686 NaN NaN NaN NaN NaN NaN NaN 124.98 1 120.21 119.71 120.71 -4.7681 0 0 0 0.20277 1 23999 23999 18.146 8.7632 1 + 7069 17478 4306 4310 7382 7382 -0.1507509630137065 DLCSQITPDC 10 Unmodified _DLCSQITPDC_ 0 0 0 REV__ENSG00000115970|ENST00000405975|THADA REV__ENSG00000115970|ENST00000405975|THADA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7669677734375 2 547.728274 1093.442 NaN NaN NaN NaN NaN NaN NaN 96.67 1 92.572 92.072 93.072 -4.0978 0 0 0 0.22588 1 18961 18961 6.7232 0.36906 1 + 7070 15459 4307 4311 7383 7383 -0.10098740402031581 DLCVTDDEAN 10 Unmodified _DLCVTDDEAN_ 0 0 0 REV__nc|ENSG00000151694|P78536-2|ADAM17 REV__nc|ENSG00000151694|P78536-2|ADAM17 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7699584960938 2 547.718961 1093.42337 NaN NaN NaN NaN NaN NaN NaN 125.99 1 121.22 120.72 121.72 -4.7681 0 0 0 0.22588 1 24181 24181 9.3831 0.78985 1 + 7071 17079 4308 4312 7384 7384 -0.11960578772254848 DLDFLHSVF 9 Unmodified _DLDFLHSVF_ 0 0 0 CASK|p.N757Tfs*40|1|0.18|ENSG00000147044|chrX:41534753-41534753|T/-|frameshift_variant;nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK CASK|p.N757Tfs*40|1|0.18|ENSG00000147044|chrX:41534753-41534753|T/-|frameshift_variant CASK|p.N757Tfs*40|1|0.18|ENSG00000147044|chrX:41534753-41534753|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7718505859375 2 546.771657 1091.52876 0.22437 0.00012268 -0.8655 -0.00047323 -0.64112 -0.00035055 546.7715983391544 99.498 0.97478 95.366 94.992 95.967 -4.1326 48 27 3 0 0 0 0.46541 1 19663 19663 21.747 0.20967 1 2723600 7072 395 4309 4313 7385 7385 -0.013342497936491782 DLDGWPNL 8 Unmodified _DLDGWPNL_ 0 0 0 ENSG00000186340|ENST00000617924|THBS2 ENSG00000186340|ENST00000617924|THBS2 ENSG00000186340|ENST00000617924|THBS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24896240234375 2 465.2218 928.429047 0.51056 0.00023752 -0.9702 -0.00045136 -0.45964 -0.00021384 465.22124678101346 119.5 0.88535 114.85 114.42 115.31 -4.645 41 24 2 0 0 0 8448 1 22872 22872 3.5871 0 1 2141400 7073 7052 4310 4314 7386 7386 -0.03803067407625349 DLDHSIGTQY 10 Unmodified _DLDHSIGTQY_ 0 0 0 nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant nc|ENSG00000092203|O94842-2|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant nc|ENSG00000092203|O94842-2|TOX4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3182373046875 2 574.76456 1147.51457 0.12144 6.9798E-05 -0.097766 -5.6192E-05 0.023672 1.3606E-05 574.7644798193841 70.826 0.83464 70.826 70.344 71.179 0 70 23 4 0 0 0 0.076343 1 13707 13707 70.332 46.311 1 65919000 7074 1831;25871 4311 4315 7387 7387 -0.053289470125946536 DLDHSIGTQY 10 Unmodified _DLDHSIGTQY_ 0 0 0 nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant nc|ENSG00000092203|O94842-2|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant nc|ENSG00000092203|O94842-2|TOX4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3248291015625 2 574.76456 1147.51457 -0.11251 -6.4668E-05 0.22977 0.00013206 0.11726 6.7396E-05 574.7647067719312 74.404 0.91581 71.04 70.639 71.555 -3.3643 79 25 4 0 0 0 0.096197 1 14519 14519 61.602 36.203 1 84804000 7075 1831;25871 4311 4315 7388 7388 -0.053289470125946536 DLDHSIGTQY 10 Unmodified _DLDHSIGTQY_ 0 0 0 nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant nc|ENSG00000092203|O94842-2|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant nc|ENSG00000092203|O94842-2|TOX4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 574.76456 1147.51457 0.23902 0.00013738 -0.11737 -6.746E-05 0.12165 6.9921E-05 574.7644827490592 74.793 1.0749 71.116 70.587 71.662 -3.6764 0.093029 -8.3058E-05 NaN 70.332 100 30 5 NaN NaN NaN NaN 0 NaN NaN 0 68778000 7076 1831;25871 4311 4315 -0.053289470125946536 DLDHSIGTQY 10 Unmodified _DLDHSIGTQY_ 0 0 0 nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant nc|ENSG00000092203|O94842-2|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant nc|ENSG00000092203|O94842-2|TOX4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 574.76456 1147.51457 0.33578 0.000193 -0.24596 -0.00014137 0.089827 5.1629E-05 574.7643902859941 74.705 0.89825 71.111 70.676 71.574 -3.594 0.08801 -0.00023087 NaN 70.332 81 25 4 NaN NaN NaN NaN 0 NaN NaN 0 76153000 7077 1831;25871 4311 4315 -0.053289470125946536 DLDHYLFPIVY 11 Unmodified _DLDHYLFPIVY_ 0 0 0 ENSG00000140030|ENST00000267549|GPR65 ENSG00000140030|ENST00000267549|GPR65 ENSG00000140030|ENST00000267549|GPR65 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24609375 3 465.571211 1393.6918 -0.12657 -5.8926E-05 -1.7262 -0.00080366 -1.8527 -0.00086259 465.5698456982998 75.009 1.1194 71.645 70.849 71.969 -3.3643 56 31 3 0 0 0 0.96104 1 14628 14628 4.4062 1.9714 1 3118200 7078 4280 4312 4316 7389 7389 0.010705085375093404 DLDHYLFPIVY 11 Unmodified _DLDHYLFPIVY_ 0 0 0 ENSG00000140030|ENST00000267549|GPR65 ENSG00000140030|ENST00000267549|GPR65 ENSG00000140030|ENST00000267549|GPR65 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2489318847656 3 465.571211 1393.6918 0.10159 4.7299E-05 -2.2595 -0.001052 -2.1579 -0.0010047 465.56970578009077 75.24 0.69643 71.518 71.235 71.931 -3.7227 42 19 3 0 0 0 0.96089 1 14230 14230 4.7159 2.0847 1 2514200 7079 4280 4312 4316 7390 7390 0.010705085375093404 DLDKCMDCASC 11 Unmodified _DLDKCMDCASC_ 0 0 0 ENSG00000006327|ENST00000326577|TNFRSF12A ENSG00000006327|ENST00000326577|TNFRSF12A ENSG00000006327|ENST00000326577|TNFRSF12A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3018188476562 2 602.211077 1202.4076 NaN NaN NaN NaN NaN NaN NaN 118.09 1 118.09 117.59 118.59 0 0 0 0 0.23698 1 23260 23260 2.7352 0.15772 1 7080 1007 4313 4317 7391 7391 -0.1855064787680476 DLDKSTGRY 9 Unmodified _DLDKSTGRY_ 0 0 0 DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1;nc|ENSG00000100592|Q9Y4D1-3|DAAM1 DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 352.8449401855469 3 352.176972 1053.50909 -0.059785 -2.1055E-05 -0.087727 -3.0895E-05 -0.14751 -5.195E-05 352.17699234572274 23.251 0.42327 21.797 21.612 22.035 -1.4535 22 11 3 0 0 0 0.5428 1 3736 3736 4.897 4.4887 1 942460 7081 774 4314 4318 7392 7392 -0.015526258044246788 DLDKSTGRY 9 Unmodified _DLDKSTGRY_ 0 0 0 DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1;nc|ENSG00000100592|Q9Y4D1-3|DAAM1 DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 352.176972 1053.50909 0.52139 0.00018362 -0.74698 -0.00026307 -0.22559 -7.9447E-05 352.1767179947184 23.368 0.50482 21.814 21.542 22.047 -1.5532 0.0085389 -0.00029759 NaN 4.897 22 13 3 NaN NaN NaN NaN 0 NaN NaN 0 816560 7082 774 4314 4318 -0.015526258044246788 DLDLSPLEY 9 Unmodified _DLDLSPLEY_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.273681640625 2 532.760955 1063.50736 0.09733 5.1854E-05 0.37858 0.00020169 0.47591 0.00025354 532.7613374889942 160.72 0.68535 160.72 160.42 161.1 0 21 18 2 0 0 0 0.1793 2 32286 32250;32286 39.957 13.074 1 3688900 7083 1160 4315 4319 7393;7394 7394 -0.021856796130578005 DLDLSSLCSL 10 Unmodified _DLDLSSLCSL_ 0 0 0 PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant;nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2 PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2613525390625 2 533.260265 1064.50598 NaN NaN NaN NaN NaN NaN NaN 164.7 1 159.91 159.41 160.41 -4.7898 0 0 0 0.22559 1 32933 32933 17.113 0 1 7084 1193 4316 4320 7395 7395 -0.023696369734580003 DLDLYDFEG 9 Unmodified _DLDLYDFEG_ 0 0 0 REV__CNTNAP2|p.W833Gfs*18|1|0.41|ENSG00000174469|chr7:148118226-148118226|C/-|frameshift_variant REV__CNTNAP2|p.W833Gfs*18|1|0.41|ENSG00000174469|chr7:148118226-148118226|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7720947265625 2 543.734937 1085.45532 0.24469 0.00013305 1.5459 0.00084058 1.7906 0.00097362 543.7347963306503 61.225 0.20493 58.285 58.193 58.398 -2.9402 10 5 3 0 0 0 0.74655 1 11778 11778 15.847 8.558 1 475450 + 7085 13467 4317 4321 7396 7396 -0.08398843026816394 DLDNTQLDFV 10 Unmodified _DLDNTQLDFV_ 0 0 0 nc|ENSG00000111087|P08151-3|GLI1;nc|ENSG00000111087|P08151-2|GLI1;GLI1|p.N1082Tfs*7|1|0.25|ENSG00000111087|chr12:57471978-57471978|C/-|frameshift_variant;ENSG00000111087|ENST00000228682|GLI1 nc|ENSG00000111087|P08151-3|GLI1 nc|ENSG00000111087|P08151-3|GLI1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.253173828125 2 590.280043 1178.54553 NaN NaN NaN NaN NaN NaN NaN 162.63 1 157.44 156.94 157.94 -5.1878 0 0 0 0.22588 1 31587 31587 9.3831 0 1 7086 2605 4318 4322 7397 7397 -0.03659793698398062 DLDQKIQKY 9 Unmodified _DLDQKIQKY_ 0 0 0 REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3107299804688 2 575.808771 1149.60299 -0.083962 -4.8346E-05 -0.27684 -0.00015941 -0.3608 -0.00020775 576.3099208108396 74.349 0.38137 70.985 70.675 71.057 -3.3643 15 10 2 0 0 0 0.39189 1 14493 14493 26.268 1.2772 1 1448600 + 7087 17048 4319 4323 7398 7398 0.034170932978668134 DLDRASVSV 9 Unmodified _DLDRASVSV_ 0 0 0 REV__PCDHB7|p.A540Rfs*2|1|0.1|ENSG00000113212|chr5:141174448-141174448|C/-|frameshift_variant REV__PCDHB7|p.A540Rfs*2|1|0.1|ENSG00000113212|chr5:141174448-141174448|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2359924316406 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 149.51 1 144.31 143.81 144.81 -5.1994 0 0 0 0.15832 1 28961 28961 2.6312 0 1 + 7088 15329 4320 4324 7399 7399 0.005799891668630153 DLDSDEDSF 9 Unmodified _DLDSDEDSF_ 0 0 0 REV__ENST00000565598.2_1_16:53404185-53404910:-|nuORF REV__ENST00000565598.2_1_16:53404185-53404910:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2572631835938 2 521.696009 1041.37746 -0.70096 -0.00036569 1.0571 0.00055147 0.3561 0.00018578 521.6972054365699 112.97 0.36115 108.44 108.18 108.54 -4.5259 13 9 3 0 0 0 0.84208 1 21700 21700 7.2892 0 1 1673100 + 7089 23111 4321 4325 7400 7400 -0.14156900682860396 DLDSLDRGRFD 11 Unmodified _DLDSLDRGRFD_ 0 0 0 REV__ENSG00000004534|ENST00000266022|RBM6 REV__ENSG00000004534|ENST00000266022|RBM6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21636962890625 3 436.877474 1307.61059 NaN NaN NaN NaN NaN NaN NaN 120.47 1 120.47 119.97 120.97 0 0 0 0 0.22942 1 23747 23747 8.7518 4.0359 1 + 7090 13837 4322 4326 7401 7401 -0.030907991725371176 DLDSVRSNW 9 Unmodified _DLDSVRSNW_ 0 0 0 REV__ENSG00000059588|ENST00000040877|TARBP1 REV__ENSG00000059588|ENST00000040877|TARBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7824096679688 2 546.259445 1090.50434 -0.020107 -1.0983E-05 0.057869 3.1611E-05 0.037762 2.0628E-05 546.259498717662 80.144 2.2791 76.339 75.716 77.995 -3.8048 179 64 5 0 0 0 0.25976 1 15137 15137 17.113 7.8691 1 163350000 + 7091 14136 4323 4327 7402 7402 -0.037295099471975846 DLDSWDDP 8 Unmodified _DLDSWDDP_ 0 0 0 REV__CARD14|p.G974D|1|0.14|ENSG00000141527|chr17:80208251-80208251|G/A|missense_variant REV__CARD14|p.G974D|1|0.14|ENSG00000141527|chr17:80208251-80208251|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77301025390625 2 481.690529 961.366506 NaN NaN NaN NaN NaN NaN NaN 162.55 1 157.37 156.87 157.87 -5.1878 0 0 0 0.21486 1 31569 31569 8.5933 0.68312 1 + 7092 13260 4324 4328 7403 7403 -0.11572258266471636 DLDTARCTTS 10 Unmodified _DLDTARCTTS_ 0 0 0 ENSG00000173801|ENST00000393931|JUP;JUP|p.S197N|1|0.38|ENSG00000173801|chr17:41769086-41769086|C/T|missense_variant ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2606811523438 2 541.74277 1081.47099 0.75657 0.00040986 -0.15372 -8.3276E-05 0.60285 0.00032659 541.7425164847293 101.41 0.51976 101.41 101.12 101.64 0 22 14 2 0 0 0 0.67319 1 19894 19894 13.906 13.906 1 1449300 7093 6310 4325 4329 7404 7404 -0.0664887978139177 DLDTVSLLA 9 Unmodified _DLDTVSLLA_ 0 0 0 REV__PCDHGC3|p.F556Lfs*34|1|0.18|ENSG00000240184|chr5:141477782-141477782|T/-|frameshift_variant REV__PCDHGC3|p.F556Lfs*34|1|0.18|ENSG00000240184|chr5:141477782-141477782|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.1754455566406 3 316.174569 945.501877 NaN NaN NaN NaN NaN NaN NaN 137.4 1 132.76 132.26 133.26 -4.6413 0 0 0 0.23508 1 27118 27118 2.7352 0 1 + 7094 19779 4326 4330 7405 7405 0.02694641595144276 DLEANVEALI 10 Unmodified _DLEANVEALI_ 0 0 0 ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;ENSG00000170442|ENST00000423955|KRT86;CON__O43790;ENSG00000205426|ENST00000327741|KRT81;CON__Q14533 ENSG00000170523|ENST00000293670|KRT83 ENSG00000170523|ENST00000293670|KRT83 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78662109375 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 168.88 1 168.88 168.38 169.38 0 0 0 0 2.8426 1 34626 34626 0.51642 0 1 + 7095 675 4327 4331 7406 7406 0.021096981696246075 DLECRPGQF 9 Unmodified _DLECRPGQF_ 0 0 0 REV__nc|ENSG00000148204|Q5IJ48-2|CRB2 REV__nc|ENSG00000148204|Q5IJ48-2|CRB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2701416015625 2 532.745116 1063.47568 0.94631 0.00050414 -1.106 -0.00058922 -0.15971 -8.5083E-05 532.742787822724 119.55 0.17444 114.91 114.77 114.95 -4.645 5 4 2 0 0 0 0.62102 1 22928 22928 11.64 2.2929 1 582290 + 7096 16964 4328 4332 7407 7407 -0.05351950847966691 DLEEEPIEA 9 Unmodified _DLEEEPIEA_ 0 0 0 REV__ENSG00000178187|ENST00000519564|ZNF454 REV__ENSG00000178187|ENST00000519564|ZNF454 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7019653320312 2 522.740219 1043.46589 -0.1866 -9.7543E-05 0.94428 0.00049362 0.75769 0.00039607 522.7407437565624 33.288 0.72747 30.97 30.698 31.426 -2.3175 44 19 3 0 0 0 0.55979 1 6086 6086 15.847 15.847 1 3789500 + 7097 18592 4329 4333 7408 7408 -0.05410860372376192 DLEEEPIEA 9 Unmodified _DLEEEPIEA_ 0 0 0 REV__ENSG00000178187|ENST00000519564|ZNF454 REV__ENSG00000178187|ENST00000519564|ZNF454 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6889038085938 2 522.740219 1043.46589 0.46505 0.0002431 0.49903 0.00026086 0.96408 0.00050396 522.7404606499704 33.21 0.75321 30.995 30.739 31.492 -2.2158 46 20 3 0 0 0 0.48644 1 5797 5797 20.454 3.5113 1 3601700 + 7098 18592 4329 4333 7409 7409 -0.05410860372376192 DLEGREPT 8 Unmodified _DLEGREPT_ 0 0 0 nc|ENSG00000146966|Q9ULE3-2|DENND2A;ENSG00000146966|ENST00000496613|DENND2A nc|ENSG00000146966|Q9ULE3-2|DENND2A nc|ENSG00000146966|Q9ULE3-2|DENND2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2374267578125 2 458.722164 915.429775 0.24351 0.0001117 -0.35675 -0.00016365 -0.11324 -5.1946E-05 458.72191746451944 119.15 0.62398 119.15 118.82 119.44 0 28 17 2 0 0 0 0.98676 1 23448 23448 15.847 7.2539 1 2612500 7099 4677 4330 4334 7410 7410 -0.03132272758580257 DLEILDYQG 9 Unmodified _DLEILDYQG_ 0 0 0 ENST00000332503.5_1_17:46656675-46656903:-|nuORF ENST00000332503.5_1_17:46656675-46656903:-|nuORF ENST00000332503.5_1_17:46656675-46656903:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2650146484375 2 533.258579 1064.50261 NaN NaN NaN NaN NaN NaN NaN 101.75 1 101.75 101.25 102.25 0 0 0 0 0.10202 1 19978 19978 37.974 1.847 1 7100 8785 4331 4335 7411 7411 -0.027065637558052913 DLELKYLMQ 9 Unmodified _DLELKYLMQ_ 0 0 0 BRINP1|p.L492M|1|0.46|ENSG00000078725|chr9:119167896-119167896|G/T|missense_variant BRINP1|p.L492M|1|0.46|ENSG00000078725|chr9:119167896-119167896|G/T|missense_variant BRINP1|p.L492M|1|0.46|ENSG00000078725|chr9:119167896-119167896|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.316162109375 2 576.8021 1151.58965 -0.016313 -9.4095E-06 -3.867 -0.0022305 -3.8834 -0.0022399 576.8007767458383 67.698 0.13715 64.589 64.489 64.626 -3.1086 5 3 2 0 0 0 0.79204 1 13127 13127 3.9444 0 1 838850 7101 332 4332 4336 7412 7412 0.0199151919423457 DLENLLDPDA 10 Unmodified _DLENLLDPDA_ 0 0 0 ITGAE|p.L601Pfs*8|1|0.31|ENSG00000083457|chr17:3751741-3751742|-/G|frameshift_variant;ITGAE|p.I909Lfs*19|1|0.09|ENSG00000083457|chr17:3732398-3732398|C/-|frameshift_variant;ENSG00000083457|ENST00000263087|ITGAE;ITGAE|p.A480Lfs*87|1|0.48|ENSG00000083457|chr17:3753872-3753872|C/-|frameshift_variant ITGAE|p.L601Pfs*8|1|0.31|ENSG00000083457|chr17:3751741-3751742|-/G|frameshift_variant ITGAE|p.L601Pfs*8|1|0.31|ENSG00000083457|chr17:3751741-3751742|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 557.7647705078125 2 557.766768 1113.51898 NaN NaN NaN NaN NaN NaN NaN 163.31 1 158.52 158.02 159.02 -4.7898 0 0 0 0.22576 1 32548 32548 14.838 4.7643 1 7102 1654 4333 4337 7413 7413 -0.03323482589712512 DLEPPRKTM 9 Unmodified _DLEPPRKTM_ 0 0 0 ENST00000566470.1_1_16:30216115-30216589:-|nuORF ENST00000566470.1_1_16:30216115-30216589:-|nuORF ENST00000566470.1_1_16:30216115-30216589:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7855224609375 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 36.778 1 36.778 36.278 37.278 0 0 0 0 0.23508 1 6786 6786 6.2058 0.44535 1 7103 11368 4334 4338 7414 7414 0.0145748173724769 DLEREAGKVY 10 Unmodified _DLEREAGKVY_ 0 0 0 nc|ENSG00000067955|Q13951|CBFB;ENST00000567947.1_1_16:67070547-67100710:+|nuORF;ENSG00000067955|ENST00000412916|CBFB nc|ENSG00000067955|Q13951|CBFB nc|ENSG00000067955|Q13951|CBFB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2677612304688 2 590.303852 1178.59315 NaN NaN NaN NaN NaN NaN NaN 144.12 1 139.17 138.67 139.67 -4.9445 0 0 0 0.22588 1 27827 27827 10.074 1.3285 1 7104 12230 4335 4339 7415 7415 0.010999052924944408 DLERETFKY 9 Unmodified _DLERETFKY_ 0 0 0 nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA nc|ENSG00000164944|Q69YN4-4|VIRMA nc|ENSG00000164944|Q69YN4-4|VIRMA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.301513671875 2 600.798403 1199.58225 1.0127 0.00060842 -0.77425 -0.00046517 0.23844 0.00014325 600.7978896200378 128.66 0.81995 124.03 123.58 124.4 -4.6292 73 22 4 0 0 0 0.31714 1 25382 25382 30.637 9.0996 1 21784000 7105 5579 4336 4340 7416 7416 -0.00955497081804424 DLETNKLDP 9 Unmodified _DLETNKLDP_ 0 0 0 BMPR2|p.E672Kfs*28|1|0.3|ENSG00000204217|chr2:202555675-202555675|A/-|frameshift_variant;ENSG00000204217|ENST00000374580|BMPR2 BMPR2|p.E672Kfs*28|1|0.3|ENSG00000204217|chr2:202555675-202555675|A/-|frameshift_variant BMPR2|p.E672Kfs*28|1|0.3|ENSG00000204217|chr2:202555675-202555675|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2725219726562 2 522.764029 1043.5135 -0.52102 -0.00027237 -0.59745 -0.00031233 -1.1185 -0.0005847 523.2649327758907 146.48 0.43811 141.36 141.11 141.55 -5.1108 18 12 2 0 0 0 0.78865 1 28339 28339 19.362 3.5148 1 8455000 7106 324 4337 4341 7417 7417 -0.006511613815291639 DLETVHESDCI 11 Unmodified _DLETVHESDCI_ 0 0 0 USP31|p.H723Tfs*68|1|0.2|ENSG00000103404|chr16:23079956-23079956|C/-|frameshift_variant;ENSG00000103404|ENST00000219689|USP31 USP31|p.H723Tfs*68|1|0.2|ENSG00000103404|chr16:23079956-23079956|C/-|frameshift_variant USP31|p.H723Tfs*68|1|0.2|ENSG00000103404|chr16:23079956-23079956|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7742919921875 2 630.774267 1259.53398 NaN NaN NaN NaN NaN NaN NaN 134.59 1 129.72 129.22 130.22 -4.8726 0 0 0 0.22943 1 25853 25853 8.7454 2.0222 1 7107 2188 4338 4342 7418 7418 -0.08540358784011914 DLFCGCHY 8 Unmodified _DLFCGCHY_ 0 0 0 sp|F5HF35|UL136_HCMVMProteinUL136OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL136PE=1SV=1 sp|F5HF35|UL136_HCMVMProteinUL136OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL136PE=1SV=1 sp|F5HF35|UL136_HCMVMProteinUL136OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL136PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7409362792969 2 479.183306 956.352059 NaN NaN NaN NaN NaN NaN NaN 143.68 1 139.02 138.52 139.52 -4.656 0 0 0 0.21486 1 28428 28428 5.2307 0 1 7108 25736 4339 4343 7419 7419 -0.12786325219963146 DLFDNYMVY 9 Unmodified _DLFDNYMVY_ 0 0 0 USP46|p.M117_Q118insVYYF|1|0.05|ENSG00000109189|chr4:52626227-52626228|-/AAAATAATAAAC|inframe_insertion USP46|p.M117_Q118insVYYF|1|0.05|ENSG00000109189|chr4:52626227-52626228|-/AAAATAATAAAC|inframe_insertion USP46|p.M117_Q118insVYYF|1|0.05|ENSG00000109189|chr4:52626227-52626228|-/AAAATAATAAAC|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2493896484375 2 590.254982 1178.49541 NaN NaN NaN NaN NaN NaN NaN 146.59 1 141.59 141.09 142.09 -5 0 0 0 0.23508 1 28372 28372 12.532 5.8084 1 7109 26562 4340 4344 7420 7420 -0.0866961962788082 DLFEILLQCSE 11 Unmodified _DLFEILLQCSE_ 0 0 0 nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11 nc|ENSG00000104133|Q96JI7-2|SPG11 nc|ENSG00000104133|Q96JI7-2|SPG11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21697998046875 3 437.216328 1308.62715 NaN NaN NaN NaN NaN NaN NaN 74.164 1 74.164 73.664 74.664 0 0 0 0 0.22814 1 14394 14394 9.7643 0.52048 1 7110 2219 4341 4345 7421 7421 -0.014814343307534728 DLFTIFYY 8 Unmodified _DLFTIFYY_ 0 0 0 REV__tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1 REV__tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.275634765625 2 541.265676 1080.5168 0.22535 0.00012198 -3.6289 -0.0019642 -3.4035 -0.0018422 541.7653851155517 115.46 0.40756 110.99 110.81 111.22 -4.4726 14 11 2 0 0 0 0.71273 1 22743 22743 12.532 0.29089 1 1340400 + 7111 25245 4342 4346 7422 7422 -0.020238665368424336 DLFTIFYY 8 Unmodified _DLFTIFYY_ 0 0 0 REV__tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1 REV__tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.265676 1080.5168 0.22535 0.00012198 -3.6289 -0.0019642 -3.4035 -0.0018422 541.7653851155517 115.46 0.40756 110.99 110.81 111.22 -4.4726 0 0 NaN 12.532 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1340400 + 7112 25245 4342 4346 -0.020238665368424336 DLFYMRNQ 8 Unmodified _DLFYMRNQ_ 0 0 0 tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1 tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1 tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7885131835938 2 543.755484 1085.49641 NaN NaN NaN NaN NaN NaN NaN 170.73 1 170.73 170.23 171.23 0 0 0 0 0.21486 1 35121 35121 11.64 5.8799 1 7113 25908 4343 4347 7423 7423 -0.04291360468300809 DLGETWAQY 9 Unmodified _DLGETWAQY_ 0 0 0 REV__ENSG00000132702|ENST00000255039|HAPLN2 REV__ENSG00000132702|ENST00000255039|HAPLN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.280029296875 2 541.743096 1081.47164 0.17722 9.6006E-05 0.0084873 4.598E-06 0.1857 0.0001006 541.7430635330469 96.82 0.65251 92.585 92.231 92.883 -4.2348 23 18 2 0 0 0 0.79204 1 18420 18420 7.2892 5.445 1 1314000 + 7114 16128 4344 4348 7424 7424 -0.06583717070043349 DLGINGKVSY 10 Unmodified _DLGINGKVSY_ 0 0 0 PCDH12|p.L685Yfs*7|3|0.18|ENSG00000113555|chr5:141955800-141955800|G/-|frameshift_variant;ENSG00000113555|ENST00000231484|PCDH12 PCDH12|p.L685Yfs*7|3|0.18|ENSG00000113555|chr5:141955800-141955800|G/-|frameshift_variant PCDH12|p.L685Yfs*7|3|0.18|ENSG00000113555|chr5:141955800-141955800|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2823486328125 2 533.282389 1064.55022 0.23043 0.00012289 -0.12183 -6.4969E-05 0.1086 5.7916E-05 533.2823100455149 89.907 1.4737 86.129 85.484 86.958 -3.7779 122 41 4 0 0 0 0.71778 1 17364 17364 9.3831 0.78985 1 11397000 7115 2748 4345 4349 7425 7425 0.020531352350417365 DLGMPPIKSE 10 Unmodified _DLGMPPIKSE_ 0 0 0 REV__HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant REV__HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7706909179688 2 543.778625 1085.5427 NaN NaN NaN NaN NaN NaN NaN 124.37 1 124.37 123.87 124.87 0 0 0 0 0.22588 1 24520 24520 8.7454 1.4562 1 + 7116 14895 4346 4350 7426 7426 0.003346596431129001 DLGTAYYL 8 Unmodified _DLGTAYYL_ 0 0 0 nc|ENSG00000134463|Q96DC8-2|ECHDC3;ENSG00000134463|ENST00000379215|ECHDC3 nc|ENSG00000134463|Q96DC8-2|ECHDC3 nc|ENSG00000134463|Q96DC8-2|ECHDC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2267150878906 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 86.612 1 82.883 82.383 83.383 -3.7289 0 0 0 0.2343 1 16562 16562 0.25148 0.12861 1 7117 3855 4347 4351 7427 7427 -0.022092991221143166 DLHFIREGHRY 11 Unmodified _DLHFIREGHRY_ 0 0 0 nc|ENSG00000141441|Q9H706-2|GAREM1;nc|ENSG00000141441|Q9H706-3|GAREM1;ENSG00000141441|ENST00000269209|GAREM1 nc|ENSG00000141441|Q9H706-2|GAREM1 nc|ENSG00000141441|Q9H706-2|GAREM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77996826171875 3 481.581103 1441.72148 0.076043 3.6621E-05 -1.006 -0.00048447 -0.92996 -0.00044785 481.91477928887707 98.269 0.49081 94.136 93.915 94.406 -4.1326 20 13 2 0 0 0 0.96147 1 19336 19336 1.3296 0 1 1554200 7118 4366 4348 4352 7428 7428 0.018288853262220073 DLHGNPWECSC 11 Unmodified _DLHGNPWECSC_ 0 0 0 ENSG00000178235|ENST00000674365|SLITRK1 ENSG00000178235|ENST00000674365|SLITRK1 ENSG00000178235|ENST00000674365|SLITRK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7490234375 2 630.742247 1259.46994 NaN NaN NaN NaN NaN NaN NaN 163.29 1 158.5 158 159 -4.7898 0 0 0 0.2367 1 32543 32543 2.9952 0.69251 1 7119 6572 4349 4353 7429 7429 -0.1494141742193733 DLHLKWTE 8 Unmodified _DLHLKWTE_ 0 0 0 nc|ENSG00000152270|Q13370-2|PDE3B;ENSG00000152270|ENST00000282096|PDE3B nc|ENSG00000152270|Q13370-2|PDE3B nc|ENSG00000152270|Q13370-2|PDE3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2747802734375 2 521.271824 1040.5291 0.56079 0.00029232 -0.44268 -0.00023076 0.1181 6.1563E-05 521.2714942103793 47.529 0.80657 47.529 47.158 47.965 0 68 22 4 0 0 0 0.49114 1 8988 8988 28.487 0 1 19733000 7120 4913 4350 4354 7430 7430 0.010451699261693648 DLHNPEEMC 9 Unmodified _DLHNPEEMC_ 0 0 0 REV__nc|ENSG00000100888|Q9HCK8-2|CHD8 REV__nc|ENSG00000100888|Q9HCK8-2|CHD8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.1419982910156 3 363.144287 1086.41103 NaN NaN NaN NaN NaN NaN NaN 91.883 1 91.883 91.383 92.383 0 0 0 0 0.23508 1 17964 17964 2.4985 0.59211 1 + 7121 13405 4351 4355 7431 7431 -0.12871893716283012 DLHSKWGVH 9 Unmodified _DLHSKWGVH_ 0 0 0 sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1;sp|P16784|ITP_HCMVAInnertegumentproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL47PE=1SV=2 sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1 sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2129211425781 3 360.185802 1077.53558 0.38641 0.00013918 -1.4721 -0.00053024 -1.0857 -0.00039106 360.18520914248285 29.261 0.56617 27.305 27.015 27.581 -1.9561 26 15 2 0 0 0 0.73309 1 5279 5279 5.2969 2.7984 1 359550 7122 25757 4352 4356 7432 7432 -8.892122423276305E-05 DLHSLLDTE 9 Unmodified _DLHSLLDTE_ 0 0 0 REV__ENSG00000081721|ENST00000367943|DUSP12 REV__ENSG00000081721|ENST00000367943|DUSP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.267578125 2 521.756204 1041.49785 0.26844 0.00014006 -4.419 -0.0023057 -4.1506 -0.0021656 521.7557389268503 125.46 0.14049 120.81 120.71 120.85 -4.6495 5 3 2 0 0 0 0.54076 1 24121 24121 17.113 0.1706 1 578630 + 7123 14431 4353 4357 7433 7433 -0.021234478985661553 DLHSLLDTE 9 Unmodified _DLHSLLDTE_ 0 0 0 REV__ENSG00000081721|ENST00000367943|DUSP12 REV__ENSG00000081721|ENST00000367943|DUSP12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2789916992188 2 521.756204 1041.49785 0.26844 0.00014006 -4.419 -0.0023057 -4.1506 -0.0021656 521.7557389268503 125.46 0.14049 120.81 120.71 120.85 -4.6495 5 3 2 0 0 0 0.81703 1 24138 24138 10.074 1.4806 1 578630 + 7124 14431 4353 4357 7434 7434 -0.021234478985661553 DLIAKDSDPL 10 Unmodified _DLIAKDSDPL_ 0 0 0 REV__CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant REV__CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7739868164062 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 126.02 1 121.25 120.75 121.75 -4.7681 0 0 0 0.22552 1 24189 24189 18.146 2.2992 1 + 7125 13259 4354 4358 7435 7435 0.021096981696246075 DLIKKLEKV 9 Unmodified _DLIKKLEKV_ 0 0 0 REV__ENST00000482262.1_1_3:51425158-51426517:+|nuORF REV__ENST00000482262.1_1_3:51425158-51426517:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7855224609375 2 543.350074 1084.6856 0.34339 0.00018658 -0.75627 -0.00041092 -0.41289 -0.00022434 543.3493451945411 36.805 0.24579 34.468 34.312 34.557 -2.3375 9 6 2 0 0 0 0.45972 1 6505 6505 8.1555 4.2792 1 278610 + 7126 16818 4355 4359 7436 7436 0.14664035096643602 DLIKKLEKV 9 Unmodified _DLIKKLEKV_ 0 0 0 REV__ENST00000482262.1_1_3:51425158-51426517:+|nuORF REV__ENST00000482262.1_1_3:51425158-51426517:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.350074 1084.6856 0.12517 6.8012E-05 0.12683 6.8911E-05 0.252 0.00013692 543.3500519474196 36.88 0.2745 34.533 34.38 34.655 -2.3479 0.032294 0.0001427 NaN 8.1555 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 690230 + 7127 16818 4355 4359 0.14664035096643602 DLIKKLEKV 9 Unmodified _DLIKKLEKV_ 0 0 0 REV__ENST00000482262.1_1_3:51425158-51426517:+|nuORF REV__ENST00000482262.1_1_3:51425158-51426517:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.350074 1084.6856 0.34339 0.00018658 -0.75627 -0.00041092 -0.41289 -0.00022434 543.3493451945411 36.805 0.24579 34.468 34.312 34.557 -2.3375 -0.032294 -0.00081697 NaN 8.1555 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 278610 + 7128 16818 4355 4359 0.14664035096643602 DLIQMEGSPP 10 Unmodified _DLIQMEGSPP_ 0 0 0 nc|ENSG00000100228|O95755-2|RAB36;ENSG00000100228|ENST00000263116|RAB36 nc|ENSG00000100228|O95755-2|RAB36 nc|ENSG00000100228|O95755-2|RAB36 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7781372070312 2 543.760432 1085.50631 NaN NaN NaN NaN NaN NaN NaN 140.85 1 135.98 135.48 136.48 -4.8678 0 0 0 0.22323 1 27167 27167 24.021 9.1823 1 7129 1940 4356 4360 7437 7437 -0.03302217253599338 DLIRRLGN 8 Unmodified _DLIRRLGN_ 0 0 0 REV__CON__A2AB72 REV__CON__A2AB72 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.737060546875 2 478.785433 955.556313 0.14565 6.9736E-05 0.014271 6.8328E-06 0.15992 7.6569E-05 478.78538107212194 153.48 0.51846 148.21 147.92 148.43 -5.2669 21 14 2 0 0 0 8448 1 29720 29720 10.074 3.8681 1 1049100 + + 7130 13500 4357 4361 7438 7438 0.07675698257230579 DLISLPTTV 9 Unmodified _DLISLPTTV_ 0 0 0 ENSG00000159658|ENST00000371933|EFCAB14 ENSG00000159658|ENST00000371933|EFCAB14 ENSG00000159658|ENST00000371933|EFCAB14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.1856689453125 3 320.186697 957.538263 NaN NaN NaN NaN NaN NaN NaN 91.927 1 88.002 87.502 88.502 -3.9251 0 0 0 0.23508 1 17999 17999 2.7352 0 1 7131 5214 4358 4362 7439 7439 0.057795184918518316 DLIVDIMFI 9 Unmodified _DLIVDIMFI_ 0 0 0 ENSG00000184611|ENST00000332142|KCNH7;nc|ENSG00000184611|Q9NS40-2|KCNH7;KCNH7|p.N805Mfs*21|1|0.44|ENSG00000184611|chr2:162396939-162396939|T/-|frameshift_variant;KCNH7|p.D991Kfs*12|1|0.24|ENSG00000184611|chr2:162380007-162380014|GCATGTCA/-|frameshift_variant;nc|ENSG00000055118|Q12809-6|KCNH2;ENST00000461280.1_1_7:150646989-150652738:-|nuORF;nc|ENSG00000055118|Q12809-5|KCNH2;ENST00000473610.5_1_7:150648470-150652738:-|nuORF;nc|ENSG00000055118|Q12809-2|KCNH2;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2 ENSG00000184611|ENST00000332142|KCNH7;nc|ENSG00000055118|Q12809-6|KCNH2 ENSG00000184611|ENST00000332142|KCNH7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20123291015625 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 123.71 1 123.71 123.21 124.21 0 0 0 0 0.23508 1 24387 24387 7.609 2.7119 1 7132 6924;10068 4359 4363 7440 7440 0.04233322170921383 DLKDLEAHID 10 Unmodified _DLKDLEAHID_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 584.7753295898438 2 584.79586 1167.57717 NaN NaN NaN NaN NaN NaN NaN 167.68 1 162.89 162.39 163.39 -4.7898 0 0 0 0.22583 1 33847 33847 13.906 3.0821 1 7133 1957 4360 4364 7441 7441 8.199055582736037E-05 DLKFSLSLQT 10 Unmodified _DLKFSLSLQT_ 0 0 0 REV__ENSG00000198786|ENST00000361567|MT-ND5 REV__ENSG00000198786|ENST00000361567|MT-ND5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.32275390625 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 80.816 1 80.816 80.316 81.316 0 0 0 0 2.8426 1 15735 15735 0.26539 0 1 + 7134 19449 4361 4365 7442 7442 0.05410263957674033 DLKGLKLHY 9 Unmodified _DLKGLKLHY_ 0 0 0 ENSG00000144451|ENST00000331683|SPAG16;nc|ENSG00000144451|Q8N0X2-5|SPAG16;SPAG16|p.F348Lfs*8|1|0.2|ENSG00000144451|chr2:213490060-213490060|T/-|frameshift_variant;ENST00000452556.5_1_2:214162070-215102915:+|nuORF;nc|ENSG00000144451|Q8N0X2-2|SPAG16;nc|ENSG00000144451|Q8N0X2-3|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7833862304688 2 543.818941 1085.62333 NaN NaN NaN NaN NaN NaN NaN 156.28 1 151.49 150.99 151.99 -4.7885 0 0 0 0.21848 1 31075 31075 18.135 1.9859 1 7135 4554 4362 4366 7443 7443 0.08394308748324875 DLKHEKLYYRI 11 Unmodified _DLKHEKLYYRI_ 0 0 0 REV__tr|U7SFW4|U7SFW4_FUSNUTriacylglycerollipaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02258PE=4SV=1 REV__tr|U7SFW4|U7SFW4_FUSNUTriacylglycerollipaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02258PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 493.74713134765625 3 493.276909 1476.8089 NaN NaN NaN NaN NaN NaN NaN 132.47 1 132.47 131.97 132.97 0 0 0 0 0.22632 1 26190 26190 0.172 0 1 + 7136 24863 4363 4367 7444 7444 0.0895666647716098 DLKHLLRSL 9 Unmodified _DLKHLLRSL_ 0 0 0 ENSG00000165059|ENST00000377276|PRKACG ENSG00000165059|ENST00000377276|PRKACG ENSG00000165059|ENST00000377276|PRKACG MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7678833007812 2 547.837665 1093.66078 NaN NaN NaN NaN NaN NaN NaN 155.31 1 150.03 149.53 150.53 -5.2854 0 0 0 0.23508 1 30125 30125 10.074 2.7847 1 7137 5591 4364 4368 7445 7445 0.11769400013940867 DLKKDTKRQL 10 Unmodified _DLKKDTKRQL_ 0 0 0 REV__nc|ENSG00000172869|Q9Y485|DMXL1 REV__nc|ENSG00000172869|Q9Y485|DMXL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.751708984375 2 622.869694 1243.72483 NaN NaN NaN NaN NaN NaN NaN 164.49 1 159.44 158.94 159.94 -5.0446 0 0 0 0.22588 1 32083 32083 8.7454 1.1365 1 + 7138 13701 4365 4369 7446 7446 0.11272135380249892 DLKKKKKKRRL 11 Unmodified _DLKKKKKKRRL_ 0 0 0 REV__ENSG00000114923|ENST00000358055|SLC4A3 REV__ENSG00000114923|ENST00000358055|SLC4A3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2530517578125 3 480.999822 1439.97764 NaN NaN NaN NaN NaN NaN NaN 138.63 1 133.99 133.49 134.49 -4.6429 0 0 0 0.23698 1 27373 27373 1.3296 1.2348 1 + 7139 15393 4366 4370 7447 7447 0.2752461290131123 DLKKKKKKRRL 11 Unmodified _DLKKKKKKRRL_ 0 0 0 REV__ENSG00000114923|ENST00000358055|SLC4A3 REV__ENSG00000114923|ENST00000358055|SLC4A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 480.9254150390625 3 480.999822 1439.97764 NaN NaN NaN NaN NaN NaN NaN 115.67 1 111.31 110.81 111.81 -4.3585 0 0 0 0.22632 1 22269 22269 0 0 1 + 7140 15393 4366 4370 7448 7448 0.2752461290131123 DLKLYESKK 9 Unmodified _DLKLYESKK_ 0 0 0 REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2938232421875 3 375.216768 1122.62847 NaN NaN NaN NaN NaN NaN NaN 12.781 1 11.771 11.271 12.271 -1.0098 0 0 0 0.23508 1 1805 1805 1.1933 0.23107 1 + 7141 24943 4367 4371 7449 7449 0.07206567820298915 DLKRFQSTGK 10 Unmodified _DLKRFQSTGK_ 0 0 0 KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;ENST00000547733.1_1_12:39688228-39705384:-|nuORF KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2770385742188 2 590.327662 1178.64077 NaN NaN NaN NaN NaN NaN NaN 165.39 1 160.6 160.1 161.1 -4.7898 0 0 0 0.22552 1 33118 33118 18.146 4.2403 1 7142 4222 4368 4372 7450 7450 0.05859604283318731 DLKRKETKW 9 Unmodified _DLKRKETKW_ 0 0 0 nc|ENSG00000151849|Q9HC77-2|CENPJ;ENSG00000151849|ENST00000381884|CENPJ nc|ENSG00000151849|Q9HC77-2|CENPJ nc|ENSG00000151849|Q9HC77-2|CENPJ MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.299560546875 2 602.345855 1202.67716 NaN NaN NaN NaN NaN NaN NaN 166.24 1 166.24 165.74 166.74 0 0 0 0 0.23508 1 33837 33837 11.64 0.14559 1 7143 4894 4369 4373 7451 7451 0.08392481180044342 DLKSFKNNL 9 Unmodified _DLKSFKNNL_ 0 0 0 nc|ENSG00000115252|P54750-3|PDE1A;nc|ENSG00000115252|P54750-8|PDE1A;nc|ENSG00000115252|P54750-9|PDE1A;nc|ENSG00000115252|P54750-2|PDE1A;ENSG00000115252|ENST00000409365|PDE1A;nc|ENSG00000115252|P54750|PDE1A;nc|ENSG00000115252|P54750-7|PDE1A;nc|ENSG00000115252|P54750-4|PDE1A;nc|ENSG00000115252|P54750-5|PDE1A nc|ENSG00000115252|P54750-3|PDE1A nc|ENSG00000115252|P54750-3|PDE1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 132.01 1 127.15 126.65 127.65 -4.8527 0 0 0 0.23508 1 25354 25354 2.7352 0.23671 1 7144 2836 4370 4374 7452 7452 0.0461712798901317 DLKSFKNNL 9 Unmodified _DLKSFKNNL_ 0 0 0 nc|ENSG00000115252|P54750-3|PDE1A;nc|ENSG00000115252|P54750-8|PDE1A;nc|ENSG00000115252|P54750-9|PDE1A;nc|ENSG00000115252|P54750-2|PDE1A;ENSG00000115252|ENST00000409365|PDE1A;nc|ENSG00000115252|P54750|PDE1A;nc|ENSG00000115252|P54750-7|PDE1A;nc|ENSG00000115252|P54750-4|PDE1A;nc|ENSG00000115252|P54750-5|PDE1A nc|ENSG00000115252|P54750-3|PDE1A nc|ENSG00000115252|P54750-3|PDE1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 159.75 1 154.52 154.02 155.02 -5.2299 0 0 0 0.23508 1 31009 31009 2.7352 0.23671 1 7145 2836 4370 4374 7453 7453 0.0461712798901317 DLKSQEKGWL 10 Unmodified _DLKSQEKGWL_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2821044921875 2 602.322045 1202.62954 NaN NaN NaN NaN NaN NaN NaN 163.21 1 158.17 157.67 158.67 -5.0446 0 0 0 0.22588 1 31746 31746 6.7232 0 1 + 7146 13287 4371 4375 7454 7454 0.036327821891973144 DLKVHDSNIY 10 Unmodified _DLKVHDSNIY_ 0 0 0 ENSG00000111110|ENST00000228705|PPM1H ENSG00000111110|ENST00000228705|PPM1H ENSG00000111110|ENST00000228705|PPM1H MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3011474609375 2 602.303852 1202.59315 NaN NaN NaN NaN NaN NaN NaN 109.44 1 105.06 104.56 105.56 -4.3776 0 0 0 0.22588 1 21568 21568 12.241 6.5088 1 7147 2606 4372 4376 7455 7455 -4.094707514923357E-05 DLKYELEMY 9 Unmodified _DLKYELEMY_ 0 0 0 nc|ENSG00000101181|Q9H4K7-2|MTG2;ENSG00000101181|ENST00000370823|MTG2 nc|ENSG00000101181|Q9H4K7-2|MTG2 nc|ENSG00000101181|Q9H4K7-2|MTG2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2792358398438 2 602.28374 1202.55293 NaN NaN NaN NaN NaN NaN NaN 148.72 1 143.57 143.07 144.07 -5.1557 0 0 0 0.19679 1 28799 28799 0.37959 0.17226 1 7148 2043 4373 4377 7456 7456 -0.04024777422296211 DLKYLKWIQNY 11 Unmodified _DLKYLKWIQNY_ 0 0 0 ENST00000315554.12_3_1:22379221-22404982:+|nuORF;ENST00000344548.7_3_1:22379221-22404982:+|nuORF ENST00000315554.12_3_1:22379221-22404982:+|nuORF ENST00000315554.12_3_1:22379221-22404982:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.40380859375 2 742.400827 1482.7871 NaN NaN NaN NaN NaN NaN NaN 163.03 1 158.24 157.74 158.74 -4.7898 0 0 0 0.23379 1 32468 32468 5.2969 0.76802 1 7149 8676 4374 4378 7457 7457 0.06501861728565927 DLKYRWIHN 9 Unmodified _DLKYRWIHN_ 0 0 0 CEACAM18|p.H266R|1|0.09|ENSG00000213822|chr19:51483140-51483140|A/G|missense_variant CEACAM18|p.H266R|1|0.09|ENSG00000213822|chr19:51483140-51483140|A/G|missense_variant CEACAM18|p.H266R|1|0.09|ENSG00000213822|chr19:51483140-51483140|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7733154296875 2 622.830372 1243.64619 NaN NaN NaN NaN NaN NaN NaN 139.96 1 135.32 134.82 135.82 -4.6439 0 0 0 0.23508 1 27632 27632 6.7232 0 1 7150 475 4375 4379 7458 7458 0.03411327865819658 DLLCRAVKY 9 Unmodified _DLLCRAVKY_ 0 0 0 AVPR1B|p.L140Cfs*38|1|0.27|ENSG00000198049|chr1:206116473-206116473|G/-|frameshift_variant;ENSG00000198049|ENST00000367126|AVPR1B AVPR1B|p.L140Cfs*38|1|0.27|ENSG00000198049|chr1:206116473-206116473|G/-|frameshift_variant AVPR1B|p.L140Cfs*38|1|0.27|ENSG00000198049|chr1:206116473-206116473|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2822875976562 2 540.797152 1079.57975 NaN NaN NaN NaN NaN NaN NaN 174.51 1 169.72 169.22 170.22 -4.7898 0 0 0 0.23508 1 35655 35655 10.824 0.75 1 7151 283 4376 4380 7459 7459 0.043143759795157166 DLLDTEPPF 9 Unmodified _DLLDTEPPF_ 0 0 0 ENST00000374825.8_1_6:32948646-32949051:+|nuORF ENST00000374825.8_1_6:32948646-32949051:+|nuORF ENST00000374825.8_1_6:32948646-32949051:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6836547851562 2 523.755672 1045.49679 0.29481 0.00015441 -2.2438 -0.0011752 -1.949 -0.0010208 523.7542486335956 21.484 0.35427 20.01 19.841 20.195 -1.4742 16 9 2 0 0 0 0.60805 1 3602 3602 12.532 2.4576 1 648170 7152 9230 4377 4381 7460 7460 -0.024136622674632235 DLLETFKGR 9 Unmodified _DLLETFKGR_ 0 0 0 REV__tr|U7T3J8|U7T3J8_FUSNUExodeoxyribonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00689PE=3SV=1 REV__tr|U7T3J8|U7T3J8_FUSNUExodeoxyribonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00689PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 60.515 1 60.515 60.015 61.015 0 0 0 0 0.23508 1 11602 11602 7.609 2.7119 1 + 7153 25365 4378 4382 7461 7461 0.0461712798901317 DLLETFKGR 9 Unmodified _DLLETFKGR_ 0 0 0 REV__tr|U7T3J8|U7T3J8_FUSNUExodeoxyribonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00689PE=3SV=1 REV__tr|U7T3J8|U7T3J8_FUSNUExodeoxyribonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00689PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 81.134 1 77.576 77.076 78.076 -3.557 0 0 0 0.23508 1 15841 15841 6.6304 1.3335 1 + 7154 25365 4378 4382 7462 7462 0.0461712798901317 DLLETFKGR 9 Unmodified _DLLETFKGR_ 0 0 0 REV__tr|U7T3J8|U7T3J8_FUSNUExodeoxyribonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00689PE=3SV=1 REV__tr|U7T3J8|U7T3J8_FUSNUExodeoxyribonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00689PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 100.12 1 95.962 95.462 96.462 -4.1594 0 0 0 0.23508 1 19673 19673 11.495 4.7715 1 + 7155 25365 4378 4382 7463 7463 0.0461712798901317 DLLFDPAQYY 10 Unmodified _DLLFDPAQYY_ 0 0 0 REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7804565429688 2 622.795329 1243.5761 NaN NaN NaN NaN NaN NaN NaN 161.68 1 156.89 156.39 157.39 -4.7898 0 0 0 0.22588 1 32157 32157 10.074 0.6908 1 + 7156 14796 4379 4383 7464 7464 -0.03594015313319687 DLLFECCWTM 10 Unmodified _DLLFECCWTM_ 0 0 0 ENST00000300688.7_1_11:118279830-118279890:+|nuORF ENST00000300688.7_1_11:118279830-118279890:+|nuORF ENST00000300688.7_1_11:118279830-118279890:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7508544921875 2 630.75852 1259.50249 NaN NaN NaN NaN NaN NaN NaN 163.74 1 158.7 158.2 159.2 -5.0446 0 0 0 0.22588 1 31882 31882 3.5965 0 1 7157 8548 4380 4384 7465 7465 -0.11688346343339617 DLLFECCWTM 10 Unmodified _DLLFECCWTM_ 0 0 0 ENST00000300688.7_1_11:118279830-118279890:+|nuORF ENST00000300688.7_1_11:118279830-118279890:+|nuORF ENST00000300688.7_1_11:118279830-118279890:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7577514648438 2 630.75852 1259.50249 NaN NaN NaN NaN NaN NaN NaN 163.78 1 158.73 158.23 159.23 -5.0446 0 0 0 0.22588 1 31892 31892 3.2813 0 1 7158 8548 4380 4384 7466 7466 -0.11688346343339617 DLLFGQSLRPY 11 Unmodified _DLLFGQSLRPY_ 0 0 0 REV__ENSG00000197136|ENST00000355703|PCNX3 REV__ENSG00000197136|ENST00000355703|PCNX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2154235839844 3 436.903072 1307.68739 0.16285 7.1151E-05 -0.47235 -0.00020637 -0.3095 -0.00013522 436.90288475036107 115.16 0.50242 110.6 110.29 110.8 -4.555 17 13 2 0 0 0 0.81736 1 22053 22053 1.3296 0.25818 1 892890 + 7159 19310 4381 4385 7467 7467 0.04585044114628545 DLLFTQPRP 9 Unmodified _DLLFTQPRP_ 0 0 0 REV__ENSG00000171132|ENST00000306156|PRKCE REV__ENSG00000171132|ENST00000306156|PRKCE MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7845458984375 2 543.800749 1085.58694 0.26032 0.00014156 -0.69527 -0.00037809 -0.43495 -0.00023653 543.7989402021118 128.85 0.17563 124.22 124.12 124.29 -4.6292 6 4 2 0 0 0 0.45788 1 25409 25409 0.40827 0 1 772890 + 7160 18204 4382 4386 7468 7468 0.04757431851612637 DLLHGNKY 8 Unmodified _DLLHGNKY_ 0 0 0 nc|ENSG00000172575|O95267-3|RASGRP1 nc|ENSG00000172575|O95267-3|RASGRP1 nc|ENSG00000172575|O95267-3|RASGRP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.254638671875 2 480.250892 958.48723 -0.15512 -7.4499E-05 0.61996 0.00029774 0.46483 0.00022324 480.25087211541324 110.39 0.52258 105.9 105.62 106.14 -4.4915 25 14 3 0 0 0 0.68128 2 21212 21165;21212 16.942 4.1604 1 1095500 7161 12465 4383 4387 7469;7470 7470 0.006326142376565258 DLLHGNKY 8 Unmodified _DLLHGNKY_ 0 0 0 nc|ENSG00000172575|O95267-3|RASGRP1 nc|ENSG00000172575|O95267-3|RASGRP1 nc|ENSG00000172575|O95267-3|RASGRP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.250892 958.48723 -0.33781 -0.00016223 0.33732 0.000162 -0.00049337 -2.3694E-07 480.25088885628094 110.36 0.38281 105.98 105.86 106.24 -4.3776 0.039325 -0.00011258 NaN 16.942 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 828500 7162 12465 4383 4387 0.006326142376565258 DLLHKVDFDI 10 Unmodified _DLLHKVDFDI_ 0 0 0 HS6ST2|p.R217H|1|0.31|ENSG00000171004|chrX:132957105-132957105|C/T|missense_variant HS6ST2|p.R217H|1|0.31|ENSG00000171004|chrX:132957105-132957105|C/T|missense_variant HS6ST2|p.R217H|1|0.31|ENSG00000171004|chrX:132957105-132957105|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 607.5967407226562 2 607.824421 1213.63429 NaN NaN NaN NaN NaN NaN NaN 170.18 1 165.39 164.89 165.89 -4.7898 0 0 0 0.22588 1 34521 34521 8.7454 1.1365 1 7163 11917 4384 4388 7471 7471 0.03601666331951492 DLLLGHLM 8 Unmodified _DLLLGHLM_ 0 0 0 REV__nc|ENSG00000137822|Q9UGJ1|TUBGCP4 REV__nc|ENSG00000137822|Q9UGJ1|TUBGCP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 456.2946472167969 2 456.254588 910.494624 NaN NaN NaN NaN NaN NaN NaN 128.61 1 123.98 123.48 124.48 -4.6292 0 0 0 0.22636 1 25354 25354 0.68139 0.37436 1 + 7164 16415 4385 4389 7472 7472 0.03579630513729626 DLLQHGKKF 9 Unmodified _DLLQHGKKF_ 0 0 0 REV__ENSG00000027075|ENST00000332981|PRKCH REV__ENSG00000027075|ENST00000332981|PRKCH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7760620117188 2 543.308741 1084.60293 0.23692 0.00012872 -1.2413 -0.00067443 -1.0044 -0.00054571 543.8096680283719 127.75 0.10654 123.05 123 123.1 -4.6998 4 2 2 0 0 0 0.52414 1 24581 24581 18.135 4.2289 1 729320 + 7165 14006 4386 4390 7473 7473 0.06401138088517655 DLLSKKKT 8 Unmodified _DLLSKKKT_ 0 0 0 ENSG00000176200|ENST00000313253|OR4D11 ENSG00000176200|ENST00000313253|OR4D11 ENSG00000176200|ENST00000313253|OR4D11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 466.7904968261719 2 466.792392 931.570232 NaN NaN NaN NaN NaN NaN NaN 165.28 1 160.34 159.84 160.84 -4.9484 0 0 0 0.16809 1 32287 32287 26.884 12.045 1 7166 6453 4387 4391 7474 7474 0.10170930965671232 DLLSPLFAQAW 11 Unmodified _DLLSPLFAQAW_ 0 0 0 REV__ACSBG1|p.M724Nfs*59|1|0.29|ENSG00000103740|chr15:78171448-78171449|-/T|frameshift_variant REV__ACSBG1|p.M724Nfs*59|1|0.29|ENSG00000103740|chr15:78171448-78171449|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7774047851562 2 630.834788 1259.65502 NaN NaN NaN NaN NaN NaN NaN 161.66 1 156.47 155.97 156.97 -5.1878 0 0 0 0.23324 1 31375 31375 5.7319 0.43497 1 + 7167 12921 4388 4392 7475 7475 0.03558256711630747 DLLVLTRPG 9 Unmodified _DLLVLTRPG_ 0 0 0 REV__ENST00000477229.1_1_1:20987242-20987843:-|nuORF REV__ENST00000477229.1_1_1:20987242-20987843:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 329.0129699707031 3 328.53432 982.581131 -0.52535 -0.00017259 0.034992 1.1496E-05 -0.49036 -0.0001611 328.53436021377865 98.785 0.77724 94.829 94.599 95.376 -3.9564 25 22 2 0 0 0 0.88284 1 18978 18978 0.96228 0 1 1852100 + 7168 19808 4389 4393 7476 7476 0.08914333339930636 DLLWPDIG 8 Unmodified _DLLWPDIG_ 0 0 0 ENSG00000012232|ENST00000220562|EXTL3;EXTL3|p.E704D|1|0.06|ENSG00000012232|chr8:28718171-28718171|G/T|missense_variant ENSG00000012232|ENST00000220562|EXTL3 ENSG00000012232|ENST00000220562|EXTL3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16436767578125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 147.47 1 147.47 146.97 147.97 0 0 0 0 0.23837 1 29497 29497 0.13829 0.015425 1 7169 1088 4390 4394 7477 7477 0.00354693631857117 DLMCADHFL 9 Unmodified _DLMCADHFL_ 0 0 0 ENST00000289081.7_1_9:98011544-98079973:-|nuORF;ENST00000433829.1_3_9:98011544-98079129:-|nuORF;ENST00000375305.5_1_9:98011544-98079438:-|nuORF ENST00000289081.7_1_9:98011544-98079973:-|nuORF ENST00000289081.7_1_9:98011544-98079973:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.276611328125 2 532.73062 1063.44669 0.11458 6.1042E-05 3.0321 0.0016153 3.1467 0.0016764 532.733283357845 141.66 0.13994 137.01 136.92 137.06 -4.6493 5 3 2 0 0 0 0.84208 1 27991 27991 1.6526 0.17072 1 1719000 7170 8466 4391 4395 7478 7478 -0.08249811468635926 DLMDSIVQIAV 11 Unmodified _DLMDSIVQIAV_ 0 0 0 REV__tr|U7SKK2|U7SKK2_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02018PE=4SV=1 REV__tr|U7SKK2|U7SKK2_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02018PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3011474609375 2 602.318114 1202.62167 1.2921 0.00077823 -0.20647 -0.00012436 1.0856 0.00065387 602.3177634694025 120.27 0.34426 115.75 115.5 115.85 -4.5221 16 9 2 0 0 0 0.5544 1 23681 23681 20.415 0.78858 1 1427900 + 7171 24932 4392 4396 7479 7479 0.028468868774098155 DLMFNRQY 8 Unmodified _DLMFNRQY_ 0 0 0 REV__nc|ENSG00000018236|Q12860-2|CNTN1 REV__nc|ENSG00000018236|Q12860-2|CNTN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7828979492188 2 543.755484 1085.49641 0.10634 5.7821E-05 -0.29905 -0.00016261 -0.19271 -0.00010479 543.7548281476529 97.41 0.76678 93.491 93.228 93.994 -3.9194 32 21 2 0 0 0 0.67678 1 18792 18792 13.508 0 1 2078800 + 7172 13970 4393 4397 7480 7480 -0.04291360468300809 DLNFDLHGY 9 Unmodified _DLNFDLHGY_ 0 0 0 REV__nc|ENSG00000104812|P13807-2|GYS1 REV__nc|ENSG00000104812|P13807-2|GYS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7684326171875 2 547.251089 1092.48762 0.36692 0.0002008 0.69587 0.00038081 1.0628 0.00058161 547.2514055177464 64.52 0.5648 61.257 60.977 61.542 -3.2623 26 15 2 0 0 0 0.70212 1 12138 12138 27.629 6.0918 1 1352100 + 7173 14942 4394 4398 7481 7481 -0.054920108331543815 DLNKNLWLGDA 11 Unmodified _DLNKNLWLGDA_ 0 0 0 REV__ENST00000594248.1_1_19:58697033-58697075:+|nuORF REV__ENST00000594248.1_1_19:58697033-58697075:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 629.9741821289062 2 629.824952 1257.63535 NaN NaN NaN NaN NaN NaN NaN 171.5 1 166.71 166.21 167.21 -4.7898 0 0 0 0.2321 1 34875 34875 6.6304 0.42459 1 + 7174 23365 4395 4399 7482 7482 0.01683880700852569 DLNKTIVNF 9 Unmodified _DLNKTIVNF_ 0 0 0 tr|U7T296|U7T296_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00517PE=3SV=1 tr|U7T296|U7T296_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00517PE=3SV=1 tr|U7T296|U7T296_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00517PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2630615234375 2 532.292756 1062.57096 0.47582 0.00025328 -0.6149 -0.00032731 -0.13908 -7.4033E-05 532.2923487723357 105.32 0.66221 100.94 100.53 101.19 -4.3764 48 18 3 0 0 0 0.55979 1 20120 20120 15.847 1.0089 1 6723600 7175 26351 4396 4400 7483 7483 0.04217725614716983 DLNLQEWLDD 10 Unmodified _DLNLQEWLDD_ 0 0 0 REV__PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant REV__PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7681884765625 2 630.790775 1259.567 NaN NaN NaN NaN NaN NaN NaN 169.45 1 164.58 164.08 165.08 -4.873 0 0 0 0.22588 1 33467 33467 3.2813 0 1 + 7176 16754 4397 4401 7484 7484 -0.05240408669669705 DLNPLTFVPA 10 Unmodified _DLNPLTFVPA_ 0 0 0 ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 ENSG00000099956|ENST00000644036|SMARCB1 ENSG00000099956|ENST00000644036|SMARCB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7962036132812 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 122.99 1 122.99 122.49 123.49 0 0 0 0 0.22583 1 24238 24238 13.906 0.39817 1 7177 1912 4398 4402 7485 7485 0.03634609757477847 DLNRWRAGREQ 11 Unmodified _DLNRWRAGREQ_ 0 0 0 ENSG00000166398|ENST00000299505|GARRE1 ENSG00000166398|ENST00000299505|GARRE1 ENSG00000166398|ENST00000299505|GARRE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 700.9130859375 2 700.860723 1399.70689 NaN NaN NaN NaN NaN NaN NaN 174.66 1 174.66 174.16 175.16 0 0 0 0 0.22632 1 36167 36167 5.4027 2.6707 1 7178 5718 4399 4403 7486 7486 0.023028131780620242 DLPAALDP 8 Unmodified _DLPAALDP_ 0 0 0 REV__ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant REV__ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3693237304688 1 811.41961 810.412334 0.69769 0.00056612 -2.942 -0.0023872 -2.2443 -0.0018211 811.418652153883 171.05 0.27917 166.18 166.05 166.33 -4.873 11 7 2 0 0 0 0.97173 1 33895 33895 12.532 2.3482 1 13583000 + 7179 18262 4400 4404 7487 7487 -0.00045568293580799946 DLPAKLFRRE 10 Unmodified _DLPAKLFRRE_ 0 0 0 REV__BAZ1A|p.F1348Hfs*8|1|0.02|ENSG00000198604|chr14:34761959-34761960|-/CAAGTGA|frameshift_variant REV__BAZ1A|p.F1348Hfs*8|1|0.02|ENSG00000198604|chr14:34761959-34761960|-/CAAGTGA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7593383789062 2 622.859129 1243.70371 0.32302 0.00020119 1.688 0.0010514 2.011 0.0012526 623.3599356826089 141.58 0.24971 136.59 136.45 136.7 -4.9877 8 6 2 0 0 0 0.86078 1 27288 27288 8.1555 0 1 858860 + 7180 13180 4401 4405 7488 7488 0.09160170071345419 DLPAPPPLV 9 Unmodified _DLPAPPPLV_ 0 0 0 REV__nc|ENSG00000172943|Q9UPP1-3|PHF8 REV__nc|ENSG00000172943|Q9UPP1-3|PHF8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.246337890625 2 459.768386 917.522219 NaN NaN NaN NaN NaN NaN NaN 150.13 1 150.13 149.63 150.63 0 0 0 0 0.23508 1 30057 30057 5.2307 0.47466 1 + 7181 24171 4402 4406 7489 7489 0.06015857045611028 DLPASYLRF 9 Unmodified _DLPASYLRF_ 0 0 0 ENST00000358689.8_2_8:23288242-23288569:-|nuORF ENST00000358689.8_2_8:23288242-23288569:-|nuORF ENST00000358689.8_2_8:23288242-23288569:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.283935546875 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 160.05 1 155.25 154.75 155.75 -4.7952 0 0 0 0.23508 1 31825 31825 9.3831 1.473 1 7182 8993 4403 4407 7490 7490 0.023337429602634074 DLPASYLRF 9 Unmodified _DLPASYLRF_ 0 0 0 ENST00000358689.8_2_8:23288242-23288569:-|nuORF ENST00000358689.8_2_8:23288242-23288569:-|nuORF ENST00000358689.8_2_8:23288242-23288569:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2634887695312 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 160.54 1 155.31 154.81 155.81 -5.2299 0 0 0 0.23508 1 31172 31172 10.824 2.2306 1 7183 8993 4403 4407 7491 7491 0.023337429602634074 DLPCKRSYL 9 Unmodified _DLPCKRSYL_ 0 0 0 TBX4|p.P371Lfs*8|2|0.28|ENSG00000121075|chr17:61482984-61482984|C/-|frameshift_variant;nc|ENSG00000121075|P57082|TBX4;ENSG00000121075|ENST00000644296|TBX4 TBX4|p.P371Lfs*8|2|0.28|ENSG00000121075|chr17:61482984-61482984|C/-|frameshift_variant TBX4|p.P371Lfs*8|2|0.28|ENSG00000121075|chr17:61482984-61482984|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7836303710938 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 148.03 1 142.88 142.38 143.38 -5.1557 0 0 0 0.23508 1 28650 28650 12.532 0.89125 1 7184 3169 4404 4408 7492 7492 0.015977855998698942 DLPEEKGKK 9 Unmodified _DLPEEKGKK_ 0 0 0 ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant;CMYA5|p.I3735Hfs*2|1|0.08|ENSG00000164309|chr5:79758842-79758843|-/T|frameshift_variant;CMYA5|p.N2399Ifs*16|1|0.46|ENSG00000164309|chr5:79735957-79735957|A/-|frameshift_variant ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2804565429688 2 522.290214 1042.56587 -0.36185 -0.00018899 0.90398 0.00047214 0.54213 0.00028315 522.2906701450785 116.94 0.6687 112.36 112.15 112.82 -4.5815 30 18 2 0 0 0 0.68435 1 22523 22523 7.2892 0.56607 1 3047100 7185 5532 4405 4409 7493 7493 0.04629421752088092 DLPEQLSIK 9 Unmodified _DLPEQLSIK_ 0 0 0 REV__nc|ENSG00000140525|Q9NVI1-2|FANCI REV__nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2727661132812 2 521.792589 1041.57063 -0.056657 -2.9563E-05 -0.32273 -0.0001684 -0.37939 -0.00019796 522.2939416836101 159.59 0.70767 154.8 154.48 155.19 -4.7952 30 19 2 0 0 0 0.37458 1 31774 31774 8.9129 6.999 1 3335100 + 7186 16583 4406 4410 7494 7494 0.0515030589485832 DLPERFQLRS 10 Unmodified _DLPERFQLRS_ 0 0 0 SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant;ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7606201171875 2 630.838394 1259.66223 NaN NaN NaN NaN NaN NaN NaN 152.99 1 148.22 147.72 148.72 -4.7684 0 0 0 0.22588 1 30401 30401 8.1555 1.0538 1 7187 2517 4407 4411 7495 7495 0.04278989312047088 DLPGALDEKE 10 Unmodified _DLPGALDEKE_ 0 0 0 ENSG00000143862|ENST00000272217|ARL8A ENSG00000143862|ENST00000272217|ARL8A ENSG00000143862|ENST00000272217|ARL8A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7776489257812 2 543.769311 1085.52407 NaN NaN NaN NaN NaN NaN NaN 93.519 1 89.528 89.028 90.028 -3.9907 0 0 0 0.21796 1 18318 18318 24.991 2.3329 1 7188 4525 4408 4412 7496 7496 -0.015271787270876303 DLPGAMGRG 9 Unmodified _DLPGAMGRG_ 0 0 0 REV__ENSG00000130584|ENST00000245663|ZBTB46 REV__ENSG00000130584|ENST00000245663|ZBTB46 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.217041015625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 77.452 1 73.793 73.293 74.293 -3.6588 0 0 0 0.23508 1 14747 14747 7.2892 0.93513 1 + 7189 16017 4409 4413 7497 7497 -0.02387587702583005 DLPGAMGRG 9 Unmodified _DLPGAMGRG_ 0 0 0 REV__ENSG00000130584|ENST00000245663|ZBTB46 REV__ENSG00000130584|ENST00000245663|ZBTB46 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21722412109375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 126.39 1 121.69 121.19 122.19 -4.6998 0 0 0 0.23508 1 24313 24313 6.7232 0.96273 1 + 7190 16017 4409 4413 7498 7498 -0.02387587702583005 DLPISDEM 8 Unmodified _DLPISDEM_ 0 0 0 REV__VANGL2|p.V99I|1|0.24|ENSG00000162738|chr1:160419104-160419104|G/A|missense_variant REV__VANGL2|p.V99I|1|0.24|ENSG00000162738|chr1:160419104-160419104|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2294616699219 2 460.207501 918.400449 NaN NaN NaN NaN NaN NaN NaN 111.7 1 107.21 106.71 107.71 -4.4915 0 0 0 0.2074 1 21441 21441 19.439 2.4967 1 + 7191 25530 4410 4414 7499 7499 -0.062015530990720436 DLPKDKNI 8 Unmodified _DLPKDKNI_ 0 0 0 ENST00000237841.5_1_12:3949907-3950609:+|nuORF;ENST00000455611.6_1_4:146049153-146095893:-|nuORF;nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4 ENST00000237841.5_1_12:3949907-3950609:+|nuORF ENST00000237841.5_1_12:3949907-3950609:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.86669921875 3 314.846675 941.518196 NaN NaN NaN NaN NaN NaN NaN 30.161 1 30.161 29.661 30.661 0 0 0 0 0.23312 1 5415 5415 6.2058 1.3088 1 7192 5517 4411 4415 7500 7500 0.04509767551905952 DLPKTLPSHS 10 Unmodified _DLPKTLPSHS_ 0 0 0 REV__RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant REV__RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7803955078125 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 162.65 1 157.51 157.01 158.01 -5.1438 0 0 0 0.22588 1 31611 31611 8.1555 0.24537 1 + 7193 18503 4412 4416 7501 7501 0.03372824126381602 DLPLFPPQDY 10 Unmodified _DLPLFPPQDY_ 0 0 0 ENST00000479591.1_1_20:30749036-30753244:+|nuORF ENST00000479591.1_1_20:30749036-30753244:+|nuORF ENST00000479591.1_1_20:30749036-30753244:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3009643554688 2 602.797872 1203.58119 1.0547 0.0006358 4.4049 0.0026553 5.4597 0.0032911 602.8002087334016 141.52 0.28094 136.87 136.78 137.06 -4.6493 9 7 2 0 0 0 0.871 1 27936 27936 6.2058 2.2614 1 2702900 7194 10344 4413 4417 7502 7502 -0.012457114507014921 DLPQNAAQQP 10 Unmodified _DLPQNAAQQP_ 0 0 0 REV__nc|ENSG00000129566|Q99973-2|TEP1 REV__nc|ENSG00000129566|Q99973-2|TEP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2843017578125 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 157.87 1 157.87 157.37 158.37 0 0 0 0 0.22588 1 31692 31692 10.074 0.72649 1 + 7195 15967 4414 4418 7503 7503 -0.017052234301445424 DLPQNAAQQP 10 Unmodified _DLPQNAAQQP_ 0 0 0 REV__nc|ENSG00000129566|Q99973-2|TEP1 REV__nc|ENSG00000129566|Q99973-2|TEP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.26318359375 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 157.97 1 157.97 157.47 158.47 0 0 0 0 0.22588 1 31714 31714 10.074 2.1638 1 + 7196 15967 4414 4418 7504 7504 -0.017052234301445424 DLPRRLQLYS 10 Unmodified _DLPRRLQLYS_ 0 0 0 DPP6|p.R512L|1|0.37|ENSG00000130226|chr7:154804952-154804952|G/T|missense_variant DPP6|p.R512L|1|0.37|ENSG00000130226|chr7:154804952-154804952|G/T|missense_variant DPP6|p.R512L|1|0.37|ENSG00000130226|chr7:154804952-154804952|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7677612304688 2 630.856586 1259.69862 NaN NaN NaN NaN NaN NaN NaN 162.4 1 157.26 156.76 157.76 -5.1438 0 0 0 0.22588 1 31552 31552 9.3831 0.63772 1 7197 884 4415 4419 7505 7505 0.07915866208759326 DLPSLHTF 8 Unmodified _DLPSLHTF_ 0 0 0 nc|ENSG00000176438|Q6ZMZ3-3|SYNE3;nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3;ENST00000555759.1_1_14:95904955-95916441:-|nuORF nc|ENSG00000176438|Q6ZMZ3-3|SYNE3 nc|ENSG00000176438|Q6ZMZ3-3|SYNE3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2502746582031 2 465.239993 928.465432 -0.17682 -8.2261E-05 0.67179 0.00031254 0.49497 0.00023028 465.2397158059815 80.459 0.10737 76.771 76.719 76.827 -3.6879 4 2 2 0 0 0 0.73426 1 15332 15332 9.3474 0 1 364100 7198 6467 4416 4420 7506 7506 -0.0016619051091311121 DLPVSAFLGY 10 Unmodified _DLPVSAFLGY_ 0 0 0 tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2827758789062 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 71.174 1 71.174 70.674 71.674 0 0 0 0 0.22576 1 13785 13785 14.838 2.3067 1 7199 26098 4417 4421 7507 7507 0.012109208661513549 DLPVSGLFPV 10 Unmodified _DLPVSGLFPV_ 0 0 0 REV__ENSG00000095906|ENST00000262302|NUBP2 REV__ENSG00000095906|ENST00000262302|NUBP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2737426757812 2 522.292225 1042.5699 NaN NaN NaN NaN NaN NaN NaN 162.52 1 157.38 156.88 157.88 -5.1438 0 0 0 0.22588 1 31582 31582 6.7232 0.51738 1 + 7200 14617 4418 4422 7508 7508 0.050315112458065414 DLPVSSFRNLP 11 Unmodified _DLPVSSFRNLP_ 0 0 0 REV__nc|ENSG00000174015|Q8NA61-2|CBY2 REV__nc|ENSG00000174015|Q8NA61-2|CBY2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7532958984375 2 622.83532 1243.65609 NaN NaN NaN NaN NaN NaN NaN 123.2 1 118.62 118.12 119.12 -4.5757 0 0 0 0.23379 1 24287 24287 5.2969 0 1 + 7201 18387 4419 4423 7509 7509 0.04400471080543866 DLPWFRTLSWY 11 Unmodified _DLPWFRTLSWY_ 0 0 0 ENSG00000101290|ENST00000460006|CDS2;ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENSG00000163624|ENST00000295887|CDS1;ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2 ENSG00000101290|ENST00000460006|CDS2;ENST00000467923.5_1_20:5107766-5163790:+|nuORF ENSG00000101290|ENST00000460006|CDS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3744506835938 2 742.372069 1482.72959 NaN NaN NaN NaN NaN NaN NaN 174.14 1 169.35 168.85 169.85 -4.7898 0 0 0 0.23476 1 35560 35560 4.5289 0.33936 1 7202 2054;10158 4420 4424 7510 7510 0.007530195230174286 DLPWFRTLSWY 11 Unmodified _DLPWFRTLSWY_ 0 0 0 ENSG00000101290|ENST00000460006|CDS2;ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENSG00000163624|ENST00000295887|CDS1;ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2 ENSG00000101290|ENST00000460006|CDS2;ENST00000467923.5_1_20:5107766-5163790:+|nuORF ENSG00000101290|ENST00000460006|CDS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3734130859375 2 742.372069 1482.72959 NaN NaN NaN NaN NaN NaN NaN 161.13 1 155.9 155.4 156.4 -5.2299 0 0 0 0.2367 1 31291 31291 2.9952 0.49676 1 7203 2054;10158 4420 4424 7511 7511 0.007530195230174286 DLQALLDNEDD 11 Unmodified _DLQALLDNEDD_ 0 0 0 ENST00000470542.5_1_7:129933020-129945674:+|nuORF;ENSG00000128510|ENST00000222482|CPA4 ENST00000470542.5_1_7:129933020-129945674:+|nuORF ENST00000470542.5_1_7:129933020-129945674:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7587280273438 2 630.783147 1259.55174 NaN NaN NaN NaN NaN NaN NaN 156.28 1 156.28 155.78 156.78 0 0 0 0 0.23519 1 31351 31351 4.1895 0.24511 1 7204 3524 4421 4425 7512 7512 -0.06765320257522944 DLQDALTLPT 10 Unmodified _DLQDALTLPT_ 0 0 0 REV__SHANK2|p.A205D|1|0.38|ENSG00000162105|chr11:71094667-71094667|G/T|missense_variant REV__SHANK2|p.A205D|1|0.38|ENSG00000162105|chr11:71094667-71094667|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.787109375 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 170.31 1 165.4 164.9 165.9 -4.9149 0 0 0 2.8426 1 33670 33670 0.043787 0 1 + 7205 24612 4422 4426 7513 7513 0.021096981696246075 DLQDCVEVSRP 11 Unmodified _DLQDCVEVSRP_ 0 0 0 nc|ENSG00000232416|Q9GZL8|BPESC1 nc|ENSG00000232416|Q9GZL8|BPESC1 nc|ENSG00000232416|Q9GZL8|BPESC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7572021484375 2 630.798077 1259.5816 NaN NaN NaN NaN NaN NaN NaN 165.46 1 160.67 160.17 161.17 -4.7898 0 0 0 0.23087 1 33138 33138 7.609 0.31972 1 7206 12608 4423 4427 7514 7514 -0.037806597931648867 DLQEDADGFG 10 Unmodified _DLQEDADGFG_ 0 0 0 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant;PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000580283.1_1_18:9594966-9614260:-|nuORF PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant;ENST00000580283.1_1_18:9594966-9614260:-|nuORF PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2719116210938 2 533.719818 1065.42508 0.35562 0.0001898 -0.33884 -0.00018085 0.01678 8.9558E-06 534.2200909515592 99.356 0.10675 99.356 99.267 99.374 0 4 2 2 0 0 0 0.71097 1 19488 19488 10.074 0.6908 1 876660 7207 5028;11494 4424 4428 7515 7515 -0.10501201691977258 DLQLYGYFDHL 11 Unmodified _DLQLYGYFDHL_ 0 0 0 REV__sp|P09709|US34_HCMVAProteinUS34OS=Humancytomegalovirus(strainAD169)OX=10360GN=US34PE=3SV=1 REV__sp|P09709|US34_HCMVAProteinUS34OS=Humancytomegalovirus(strainAD169)OX=10360GN=US34PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.54156494140625 3 461.890832 1382.65067 -0.4409 -0.00020365 0.072253 3.3373E-05 -0.36865 -0.00017028 461.89103421889445 106.41 1.1535 102.15 101.76 102.91 -4.2638 61 32 4 0 0 0 0.96165 1 21053 21053 1.1098 0 1 3992400 + 7208 24689 4425 4429 7516 7516 -0.025352525019343375 DLQLYGYFDHL 11 Unmodified _DLQLYGYFDHL_ 0 0 0 REV__sp|P09709|US34_HCMVAProteinUS34OS=Humancytomegalovirus(strainAD169)OX=10360GN=US34PE=3SV=1 REV__sp|P09709|US34_HCMVAProteinUS34OS=Humancytomegalovirus(strainAD169)OX=10360GN=US34PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 461.890832 1382.65067 0.61941 0.0002861 0.092424 4.269E-05 0.71184 0.00032879 461.8909123720285 101.87 0.56184 101.87 101.57 102.13 0 -0.099163 0.00038547 NaN 1.1098 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3699600 + 7209 24689 4425 4429 -0.025352525019343375 DLQLYGYFDHL 11 Unmodified _DLQLYGYFDHL_ 0 0 0 REV__sp|P09709|US34_HCMVAProteinUS34OS=Humancytomegalovirus(strainAD169)OX=10360GN=US34PE=3SV=1 REV__sp|P09709|US34_HCMVAProteinUS34OS=Humancytomegalovirus(strainAD169)OX=10360GN=US34PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 461.890832 1382.65067 0.73149 0.00033787 -0.53638 -0.00024775 0.19511 9.012E-05 461.89065110045436 105.98 0.58788 101.89 101.61 102.19 -4.0913 -0.079058 -0.00048584 NaN 1.1098 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3171500 + 7210 24689 4425 4429 -0.025352525019343375 DLQPSGLW 8 Unmodified _DLQPSGLW_ 0 0 0 ENSG00000188585|ENST00000623247|CLEC20A ENSG00000188585|ENST00000623247|CLEC20A ENSG00000188585|ENST00000623247|CLEC20A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2333068847656 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 161.56 1 156.77 156.27 157.27 -4.7898 0 0 0 0.21486 1 32132 32132 8.5933 0 1 7211 7179 4426 4430 7517 7517 -0.010864770279454206 DLQQKIIPD 9 Unmodified _DLQQKIIPD_ 0 0 0 ENSG00000151779|ENST00000281513|NBAS;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant ENSG00000151779|ENST00000281513|NBAS ENSG00000151779|ENST00000281513|NBAS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5594177246094 3 357.201118 1068.58152 -0.24075 -8.5996E-05 1.2719 0.00045433 1.0312 0.00036833 357.20165161958596 31.692 0.35164 31.692 31.458 31.809 0 19 9 3 0 0 0 0.82357 1 5750 5750 10.8 0.64894 1 585160 7212 4887 4427 4431 7518 7518 0.04997708269161194 DLQQLVSA 8 Unmodified _DLQQLVSA_ 0 0 0 REV__MED26|p.D308Vfs*113|1|0.45|ENSG00000105085|chr19:16576907-16576907|T/-|frameshift_variant REV__MED26|p.D308Vfs*113|1|0.45|ENSG00000105085|chr19:16576907-16576907|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21630859375 2 437.23745 872.460347 -0.11577 -5.0618E-05 0.27728 0.00012124 0.16151 7.0619E-05 437.2375762875755 93.47 1.0026 89.626 89.158 90.16 -3.844 64 28 3 0 0 0 0.087478 1 17868 17868 78.149 7.0158 1 16848000 + 7213 14961 4428 4432 7519 7519 0.019015056264720442 DLQSLSWL 8 Unmodified _DLQSLSWL_ 0 0 0 FOXN4|p.P152Rfs*50|1|0.13|ENSG00000139445|chr12:109287857-109287857|G/-|frameshift_variant;nc|ENSG00000139445|Q96NZ1-2|FOXN4;ENSG00000139445|ENST00000299162|FOXN4 FOXN4|p.P152Rfs*50|1|0.13|ENSG00000139445|chr12:109287857-109287857|G/-|frameshift_variant FOXN4|p.P152Rfs*50|1|0.13|ENSG00000139445|chr12:109287857-109287857|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2534484863281 2 481.2531 960.491647 -0.40587 -0.00019532 1.1188 0.00053844 0.71296 0.00034312 481.2535774783836 109.43 0.70076 105.05 104.61 105.31 -4.3776 28 19 2 0 0 0 0.70613 1 21596 21596 13.508 1.8676 1 1467500 7214 4248 4429 4433 7520 7520 0.00982078660570096 DLQYELAQ 8 Unmodified _DLQYELAQ_ 0 0 0 ENST00000568284.1_1_16:90108802-90109750:+|nuORF;ENST00000564789.5_1_16:90106452-90109750:+|nuORF;ENST00000569558.5_1_16:90103573-90109750:+|nuORF;nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8 ENST00000568284.1_1_16:90108802-90109750:+|nuORF ENST00000568284.1_1_16:90108802-90109750:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2544250488281 2 490.24019 978.465826 0.42535 0.00020853 -0.3484 -0.0001708 0.076954 3.7726E-05 490.23993535624356 99.316 0.83353 99.316 98.856 99.69 0 54 23 4 0 0 0 0.71273 1 19405 19405 12.532 0.89125 1 8676500 7215 4342 4430 4434 7521 7521 -0.0242681558172535 DLRAFYAELY 10 Unmodified _DLRAFYAELY_ 0 0 0 ENST00000559005.2_1_14:24612620-24612898:-|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENSG00000100911|ENST00000216802|PSME2 ENST00000559005.2_1_14:24612620-24612898:-|nuORF ENST00000559005.2_1_14:24612620-24612898:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7755737304688 2 630.816596 1259.61864 NaN NaN NaN NaN NaN NaN NaN 126 1 121.35 120.85 121.85 -4.6495 0 0 0 0.22588 1 24241 24241 10.074 2.7847 1 7216 2023 4431 4435 7522 7522 -0.0007862018510422786 DLRATCLEGT 10 Unmodified _DLRATCLEGT_ 0 0 0 ENST00000585885.5_1_19:10818158-10819649:+|nuORF ENST00000585885.5_1_19:10818158-10819649:+|nuORF ENST00000585885.5_1_19:10818158-10819649:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2132873535156 3 360.178096 1077.51246 0.37801 0.00013615 -0.2273 -8.1867E-05 0.15071 5.4284E-05 360.17803199481585 22.436 0.51497 20.962 20.73 21.245 -1.4742 45 14 5 0 0 0 0.89825 1 3827 3827 12.175 8.8934 1 3136400 7217 11539 4432 4436 7523 7523 -0.02319699022086752 DLREFETRI 9 Unmodified _DLREFETRI_ 0 0 0 ENSG00000115825|ENST00000234179|PRKD3 ENSG00000115825|ENST00000234179|PRKD3 ENSG00000115825|ENST00000234179|PRKD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 393.2908935546875 3 393.543655 1177.60914 0.0052695 2.0738E-06 0.086841 3.4176E-05 0.092111 3.625E-05 393.54361181215415 77.935 0.31824 74.168 73.93 74.248 -3.7664 14 8 2 0 0 0 0.85111 1 14776 14776 4.1895 0.90819 1 747120 7218 2886 4433 4437 7524 7524 0.027436115293767216 DLRERQAHC 9 Unmodified _DLRERQAHC_ 0 0 0 REV__ENST00000559466.1_1_21:9908333-9912191:-|nuORF REV__ENST00000559466.1_1_21:9908333-9912191:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 376.1871337890625 3 376.517335 1126.53017 -0.89505 -0.000337 0.55351 0.0002084 -0.34154 -0.0001286 376.51743815285715 24.84 0.54785 22.986 22.744 23.292 -1.8534 29 15 3 0 0 0 0.65034 1 4016 4016 0.073264 0.069883 1 1113000 + 7219 23030 4434 4438 7525 7525 -0.02802938976560654 DLRERQAHC 9 Unmodified _DLRERQAHC_ 0 0 0 REV__ENST00000559466.1_1_21:9908333-9912191:-|nuORF REV__ENST00000559466.1_1_21:9908333-9912191:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 376.517335 1126.53017 -0.13627 -5.1309E-05 -0.14786 -5.5672E-05 -0.28413 -0.00010698 376.5171613122467 23.078 0.41009 23.078 22.892 23.303 0 0.028341 -8.1604E-05 NaN 0.073264 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1522300 + 7220 23030 4434 4438 -0.02802938976560654 DLRERQAHC 9 Unmodified _DLRERQAHC_ 0 0 0 REV__ENST00000559466.1_1_21:9908333-9912191:-|nuORF REV__ENST00000559466.1_1_21:9908333-9912191:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 376.517335 1126.53017 0.80717 0.00030391 -0.79595 -0.00029969 0.011225 4.2266E-06 376.5168864791516 24.716 0.61747 23.068 22.789 23.407 -1.6482 0.017778 -0.00081365 NaN 0.073264 33 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1560800 + 7221 23030 4434 4438 -0.02802938976560654 DLRERQAHC 9 Unmodified _DLRERQAHC_ 0 0 0 REV__ENST00000559466.1_1_21:9908333-9912191:-|nuORF REV__ENST00000559466.1_1_21:9908333-9912191:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 376.517335 1126.53017 0.026689 1.0049E-05 -0.02801 -1.0546E-05 -0.0013208 -4.9732E-07 376.51721218302134 24.601 0.48122 23.067 22.817 23.299 -1.5342 0.017362 5.3774E-05 NaN 0.073264 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1270300 + 7222 23030 4434 4438 -0.02802938976560654 DLRGLVSTFT 10 Unmodified _DLRGLVSTFT_ 0 0 0 ENSG00000167702|ENST00000645548|KIFC2;nc|ENSG00000167702|Q96AC6|KIFC2;nc|ENSG00000167702|Q96AC6-2|KIFC2 ENSG00000167702|ENST00000645548|KIFC2 ENSG00000167702|ENST00000645548|KIFC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 555.126708984375 2 554.803488 1107.59242 NaN NaN NaN NaN NaN NaN NaN 170.15 1 165.36 164.86 165.86 -4.7898 0 0 0 0.22588 1 34513 34513 6.2058 0 1 7223 5838 4435 4439 7526 7526 0.04293110643448017 DLRHYLNL 8 Unmodified _DLRHYLNL_ 0 0 0 MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant;nc|ENSG00000187391|Q86UL8-2|MAGI2;ENSG00000187391|ENST00000354212|MAGI2;MAGI2|p.D644Vfs*8|1|0.05|ENSG00000187391|chr7:78256059-78256060|-/AAGACAAACA|frameshift_variant MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2683715820312 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 151.76 1 146.59 146.09 147.09 -5.1759 0 0 0 0.23107 1 29410 29410 0.62683 0.49901 1 7224 7106 4436 4440 7527 7527 0.036402785373638835 DLRINLWHL 9 Unmodified _DLRINLWHL_ 0 0 0 nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C;nc|ENSG00000074211|Q9Y2T4-4|PPP2R2C;nc|ENSG00000074211|Q9Y2T4-2|PPP2R2C;ENSG00000074211|ENST00000382599|PPP2R2C;ENST00000490777.2_10:133754324-133769464:+|nuORF;ABHD12-PPP2R2A|1|fusion;PPP2R2A|p.S282Pfs*10|2|0.41|ENSG00000221914|chr8:26363756-26363756|T/-|frameshift_variant;ENSG00000221914|ENST00000380737|PPP2R2A;ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C;PPP2R2A|p.S282Pfs*10|2|0.41|ENSG00000221914|chr8:26363756-26363756|T/-|frameshift_variant PPP2R2A|p.S282Pfs*10|2|0.41|ENSG00000221914|chr8:26363756-26363756|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2533569335938 2 590.33529 1178.65603 NaN NaN NaN NaN NaN NaN NaN 174.03 1 169.15 168.65 169.65 -4.8845 0 0 0 0.23508 1 34568 34568 10.074 2.7847 1 7225 1495;6413 4437 4441 7528 7528 0.0738451587117197 DLRKSLKIKV 10 Unmodified _DLRKSLKIKV_ 0 0 0 REV__ENST00000565846.2_1_15:56485023-56485380:-|nuORF REV__ENST00000565846.2_1_15:56485023-56485380:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 600.3941040039062 2 600.395348 1198.77614 NaN NaN NaN NaN NaN NaN NaN 164.59 1 159.52 159.02 160.02 -5.0648 0 0 0 0.22588 1 32105 32105 6.2058 2.9245 1 + 7226 23116 4438 4442 7529 7529 0.18470504144920596 DLRLRLWP 8 Unmodified _DLRLRLWP_ 0 0 0 ENSG00000173080|ENST00000368318|RXFP4 ENSG00000173080|ENST00000368318|RXFP4 ENSG00000173080|ENST00000368318|RXFP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 535.28759765625 2 534.819276 1067.624 NaN NaN NaN NaN NaN NaN NaN 169.24 1 164.32 163.82 164.82 -4.9295 0 0 0 0.21486 1 33406 33406 4.756 0 1 7227 6263 4439 4443 7530 7530 0.09289148188031504 DLRQRKVKH 9 Unmodified _DLRQRKVKH_ 0 0 0 REV__nc|ENSG00000175029|P56545|CTBP2 REV__nc|ENSG00000175029|P56545|CTBP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2603149414062 2 590.357088 1178.69962 NaN NaN NaN NaN NaN NaN NaN 116.37 1 111.78 111.28 112.28 -4.5815 0 0 0 0.19628 1 22330 22330 0.029283 0 1 + 7228 24180 4440 4444 7531 7531 0.11742125368323286 DLRREMVY 8 Unmodified _DLRREMVY_ 0 0 0 SRCIN1|p.K846Rfs*3|1|0.3|ENSG00000277363|chr17:38552078-38552078|G/-|frameshift_variant;SRCIN1|p.S866Afs*4|3|0.35|ENSG00000277363|chr17:38552018-38552018|G/-|frameshift_variant;SRCIN1|p.P868Rfs*2|1|0.47|ENSG00000277363|chr17:38552010-38552010|G/-|frameshift_variant;nc|ENSG00000277363|Q9C0H9-2|SRCIN1;ENSG00000277363|ENST00000617146|SRCIN1 SRCIN1|p.K846Rfs*3|1|0.3|ENSG00000277363|chr17:38552078-38552078|G/-|frameshift_variant SRCIN1|p.K846Rfs*3|1|0.3|ENSG00000277363|chr17:38552078-38552078|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2583618164062 2 541.276583 1080.53861 NaN NaN NaN NaN NaN NaN NaN 79.872 1 76.362 75.862 76.862 -3.5102 0 0 0 0.21486 1 15598 15598 9.3474 0 1 7229 8035 4441 4445 7532 7532 0.0015661494007872534 DLRRLWRWFWS 11 Unmodified _DLRRLWRWFWS_ 0 0 0 REV__ENST00000339526.8_1_1:182360314-182360662:-|nuORF REV__ENST00000339526.8_1_1:182360314-182360662:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3780517578125 2 810.930951 1619.84735 NaN NaN NaN NaN NaN NaN NaN 162.34 1 162.34 161.84 162.84 0 0 0 0 0.23698 1 32634 32634 1.3295 1.0605 1 + 7230 20695 4442 4446 7533 7533 0.062220169022793925 DLRSCCCRCSD 11 Unmodified _DLRSCCCRCSD_ 0 0 0 ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7498168945312 2 630.733042 1259.45153 NaN NaN NaN NaN NaN NaN NaN 123.88 1 119.31 118.81 119.81 -4.5757 0 0 0 0.23698 1 24423 24423 2.4985 0.43874 1 7231 11709 4443 4447 7534 7534 -0.16781618659820197 DLRYGGDYDSF 11 Unmodified _DLRYGGDYDSF_ 0 0 0 ASTE1|p.T170Lfs*6|1|0.43|ENSG00000034533|chr3:131024799-131024799|T/-|frameshift_variant;nc|ENSG00000034533|Q2TB18-2|ASTE1;ENSG00000034533|ENST00000264992|ASTE1 ASTE1|p.T170Lfs*6|1|0.43|ENSG00000034533|chr3:131024799-131024799|T/-|frameshift_variant ASTE1|p.T170Lfs*6|1|0.43|ENSG00000034533|chr3:131024799-131024799|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2172546386719 3 436.522808 1306.5466 -0.18568 -8.1053E-05 0.041197 1.7983E-05 -0.14448 -6.3069E-05 436.5228008197466 75.574 0.89291 72.159 71.716 72.608 -3.4151 98 25 5 0 0 0 0.78057 1 14816 14816 6.2344 0.042509 1 88041000 7232 242 4444 4448 7535 7535 -0.09441579329472916 DLRYGGDYDSF 11 Unmodified _DLRYGGDYDSF_ 0 0 0 ASTE1|p.T170Lfs*6|1|0.43|ENSG00000034533|chr3:131024799-131024799|T/-|frameshift_variant;nc|ENSG00000034533|Q2TB18-2|ASTE1;ENSG00000034533|ENST00000264992|ASTE1 ASTE1|p.T170Lfs*6|1|0.43|ENSG00000034533|chr3:131024799-131024799|T/-|frameshift_variant ASTE1|p.T170Lfs*6|1|0.43|ENSG00000034533|chr3:131024799-131024799|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 436.522808 1306.5466 -0.18568 -8.1053E-05 0.041197 1.7983E-05 -0.14448 -6.3069E-05 436.5228008197466 75.574 0.89291 72.159 71.716 72.608 -3.4151 0.040155 0.00014696 NaN 6.2344 98 25 5 NaN NaN NaN NaN 0 NaN NaN 0 88041000 7233 242 4444 4448 -0.09441579329472916 DLRYGGDYDSF 11 Unmodified _DLRYGGDYDSF_ 0 0 0 ASTE1|p.T170Lfs*6|1|0.43|ENSG00000034533|chr3:131024799-131024799|T/-|frameshift_variant;nc|ENSG00000034533|Q2TB18-2|ASTE1;ENSG00000034533|ENST00000264992|ASTE1 ASTE1|p.T170Lfs*6|1|0.43|ENSG00000034533|chr3:131024799-131024799|T/-|frameshift_variant ASTE1|p.T170Lfs*6|1|0.43|ENSG00000034533|chr3:131024799-131024799|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 436.522808 1306.5466 0.055386 2.4177E-05 -0.20136 -8.7897E-05 -0.14597 -6.372E-05 436.5226915094389 75.712 1.1721 72.078 71.643 72.815 -3.6337 -0.040155 -0.00017068 NaN 6.2344 126 33 5 NaN NaN NaN NaN 0 NaN NaN 0 77272000 7234 242 4444 4448 -0.09441579329472916 DLSAQLTAT 9 Unmodified _DLSAQLTAT_ 0 0 0 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2408142089844 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 58.902 1 55.65 55.15 56.15 -3.2517 0 0 0 0.19343 1 10949 10949 0.40827 0.028676 1 + 7235 24026 4445 4449 7536 7536 0.0033318441828669165 DLSELEPHF 9 Unmodified _DLSELEPHF_ 0 0 0 REV__ENST00000473217.5_1_17:27901722-27902547:-|nuORF REV__ENST00000473217.5_1_17:27901722-27902547:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7840576171875 2 543.758746 1085.50294 0.32557 0.00017703 -2.2565 -0.001227 -1.9309 -0.0010499 543.7575964102936 101.25 0.67157 96.956 96.505 97.176 -4.297 27 19 2 0 0 0 0.37087 1 19304 19304 0.96228 0.69689 1 1955100 + 7236 15112 4446 4450 7537 7537 -0.03639144035946629 DLSESSNWGCY 11 Unmodified _DLSESSNWGCY_ 0 0 0 ENSG00000144214|ENST00000308528|LYG1 ENSG00000144214|ENST00000308528|LYG1 ENSG00000144214|ENST00000308528|LYG1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.75439453125 2 630.74551 1259.47647 NaN NaN NaN NaN NaN NaN NaN 121.05 1 116.51 116.01 117.01 -4.5441 0 0 0 0.23429 1 23865 23865 4.897 0.141 1 7237 4545 4447 4451 7538 7538 -0.14289200989560413 DLSHNQLLF 9 Unmodified _DLSHNQLLF_ 0 0 0 ENSG00000174004|ENST00000328557|NRROS ENSG00000174004|ENST00000328557|NRROS ENSG00000174004|ENST00000328557|NRROS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.782470703125 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 139.39 1 134.75 134.25 135.25 -4.6439 0 0 0 0.18039 1 27518 27518 0.40827 0 1 7238 6322 4448 4452 7539 7539 0.01120554954900399 DLSHRCLL 8 Unmodified _DLSHRCLL_ 0 0 0 REV__ENST00000324379.9_1_1:40219137-40219350:+|nuORF REV__ENST00000324379.9_1_1:40219137-40219350:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7273864746094 2 478.752744 955.490935 NaN NaN NaN NaN NaN NaN NaN 102.28 1 98.095 97.595 98.595 -4.1861 0 0 0 0.22647 1 20100 20100 6.1918 0 1 + 7239 20569 4449 4453 7540 7540 0.011409607398718435 DLSIHAPEY 9 Unmodified _DLSIHAPEY_ 0 0 0 REV__nc|ENSG00000204613|Q9UDY6-2|TRIM10 REV__nc|ENSG00000204613|Q9UDY6-2|TRIM10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2604370117188 2 522.753464 1043.49238 -0.37845 -0.00019784 0.18277 9.5546E-05 -0.19568 -0.00010229 522.7535113210135 28.339 1.1889 26.584 26.105 27.294 -1.7552 78 33 3 0 0 0 0.72864 1 4920 4920 16.942 6.1184 1 22319000 + 7240 19553 4450 4454 7541 7541 -0.027631266903881624 DLSQVPVPNL 10 Unmodified _DLSQVPVPNL_ 0 0 0 nc|ENSG00000172379|Q9HBZ2-2|ARNT2;ENSG00000172379|ENST00000303329|ARNT2 nc|ENSG00000172379|Q9HBZ2-2|ARNT2 nc|ENSG00000172379|Q9HBZ2-2|ARNT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2652587890625 2 541.298039 1080.58152 NaN NaN NaN NaN NaN NaN NaN 163.74 1 158.7 158.2 159.2 -5.0446 0 0 0 0.22588 1 31883 31883 12.241 0.60036 1 7241 6216 4451 4455 7542 7542 0.04445708269145143 DLSRFEFDEC 10 Unmodified _DLSRFEFDEC_ 0 0 0 CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant;CIC|p.P518Rfs*5|2|0.37|ENSG00000079432|chr19:42290317-42290317|C/-|frameshift_variant;CIC|p.P509Hfs*14|2|0.27|ENSG00000079432|chr19:42290289-42290289|C/-|frameshift_variant;CIC|p.A785Pfs*139|1|0.34|ENSG00000079432|chr19:42291117-42291117|G/-|frameshift_variant;CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant;CIC|p.E1288Gfs*56|1|0.3|ENSG00000079432|chr19:42293654-42293655|-/G|frameshift_variant;ENSG00000079432|ENST00000681038|CIC CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.76123046875 2 630.763703 1259.51285 NaN NaN NaN NaN NaN NaN NaN 91.258 1 91.258 90.758 91.758 0 0 0 0 0.22588 1 17830 17830 8.1555 1.4324 1 7242 560 4452 4456 7543 7543 -0.10652324092848175 DLSRQIPQ 8 Unmodified _DLSRQIPQ_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR;MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7232971191406 2 478.761623 955.508694 -0.37072 -0.00017749 0.46845 0.00022427 0.097726 4.6787E-05 478.7618562938693 59.532 0.75414 59.532 59.141 59.895 0 34 20 2 0 0 0 0.27447 1 11451 11451 37.974 1.9298 1 1993600 7243 7494 4453 4457 7544 7544 0.02915999266383551 DLSVCSALV 9 Unmodified _DLSVCSALV_ 0 0 0 SLC36A3|p.R374C|1|0.27|ENSG00000186334|chr5:151281038-151281038|G/A|missense_variant SLC36A3|p.R374C|1|0.27|ENSG00000186334|chr5:151281038-151281038|G/A|missense_variant SLC36A3|p.R374C|1|0.27|ENSG00000186334|chr5:151281038-151281038|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75982666015625 2 453.733686 905.452819 0.24554 0.00011141 -0.65197 -0.00029582 -0.40643 -0.00018441 453.7333949811844 87.005 0.6685 83.055 82.754 83.423 -3.9503 32 18 2 0 0 0 0.76271 1 16571 16571 20.454 4.6064 1 3039300 7244 25682 4454 4458 7545 7545 -0.003689699654501055 DLSVSELRY 9 Unmodified _DLSVSELRY_ 0 0 0 REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2792358398438 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 93.733 1 89.889 89.389 90.389 -3.844 0 0 0 0.20628 1 17971 17971 21.747 0 1 + 7245 14796 4455 4459 7546 7546 0.008088313724329055 DLTDQQAAV 9 Unmodified _DLTDQQAAV_ 0 0 0 REV__ENSG00000124198|ENST00000371917|ARFGEF2 REV__ENSG00000124198|ENST00000371917|ARFGEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2539978027344 2 480.735271 959.45599 0.069888 3.3598E-05 0.079215 3.8081E-05 0.1491 7.1679E-05 480.7352495051411 52.341 0.84349 49.253 48.845 49.689 -3.0876 57 23 3 0 0 0 0.21532 1 9672 9672 39.957 5.8549 1 15185000 + 7246 15761 4456 4460 7547 7547 -0.02536003587090363 DLTEEERKLKI 11 Unmodified _DLTEEERKLKI_ 0 0 0 REV__ENST00000569319.5_1_16:70399881-70405886:+|nuORF REV__ENST00000569319.5_1_16:70399881-70405886:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22894287109375 3 458.592675 1372.75619 0.65411 0.00029997 -0.79853 -0.0003662 -0.14443 -6.6232E-05 458.59227391884764 103.81 0.42388 99.752 99.489 99.913 -4.0543 13 11 2 0 0 0 0.96197 1 19960 19960 1.2148 1.1416 1 1145700 + 7247 17292 4457 4461 7548 7548 0.08472663623660992 DLTEFSPLSS 10 Unmodified _DLTEFSPLSS_ 0 0 0 REV__nc|ENSG00000121289|Q96ST8-3|CEP89 REV__nc|ENSG00000121289|Q96ST8-3|CEP89 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7769775390625 2 548.263862 1094.51317 -0.058426 -3.2033E-05 0.92829 0.00050895 0.86986 0.00047691 548.2646125838012 112.04 0.63438 107.62 107.3 107.94 -4.4231 26 17 3 0 0 0 0.70987 1 22034 22034 30.637 2.1497 1 1642000 + 7248 15650 4458 4462 7549 7549 -0.030305811013704442 DLTEFSPLSS 10 Unmodified _DLTEFSPLSS_ 0 0 0 REV__nc|ENSG00000121289|Q96ST8-3|CEP89 REV__nc|ENSG00000121289|Q96ST8-3|CEP89 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 548.263862 1094.51317 -0.017123 -9.3878E-06 0.87181 0.00047798 0.85468 0.00046859 548.2643475366718 112 0.35022 107.47 107.38 107.73 -4.5259 -0.073436 -4.1926E-05 NaN 30.637 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 964390 + 7249 15650 4458 4462 -0.030305811013704442 DLTFLWDMFG 10 Unmodified _DLTFLWDMFG_ 0 0 0 MPP7|p.I139*|1|0.24|ENSG00000150054|chr10:28131592-28131592|T/-|frameshift_variant;ENSG00000150054|ENST00000683449|MPP7 MPP7|p.I139*|1|0.24|ENSG00000150054|chr10:28131592-28131592|T/-|frameshift_variant MPP7|p.I139*|1|0.24|ENSG00000150054|chr10:28131592-28131592|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7572021484375 2 622.78645 1243.55835 NaN NaN NaN NaN NaN NaN NaN 164.18 1 159.14 158.64 159.64 -5.0446 0 0 0 0.22588 1 32001 32001 3.9444 0 1 7250 4820 4459 4463 7550 7550 -0.05369053839854132 DLTGRTQQAP 10 Unmodified _DLTGRTQQAP_ 0 0 0 REV__ENST00000579125.1_1_17:62776100-62776705:-|nuORF REV__ENST00000579125.1_1_17:62776100-62776705:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7784423828125 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 167.01 1 162.22 161.72 162.72 -4.7898 0 0 0 0.22559 1 33623 33623 17.113 2.2746 1 + 7251 23222 4460 4464 7551 7551 0.00718465461204687 DLTHKLADI 9 Unmodified _DLTHKLADI_ 0 0 0 nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.Q529Rfs*32|2|0.24|ENSG00000181222|chr17:7499400-7499400|C/-|frameshift_variant;nc|ENSG00000181222|P24928-2|POLR2A nc|ENSG00000181222|P24928|POLR2A nc|ENSG00000181222|P24928|POLR2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 513.2841796875 2 513.284931 1024.55531 NaN NaN NaN NaN NaN NaN NaN 146.37 1 141.69 141.19 142.19 -4.6868 0 0 0 0.18039 1 29029 29029 4.7159 0 1 7252 6715 4461 4465 7552 7552 0.044014390976599316 DLTIVAIILL 10 Unmodified _DLTIVAIILL_ 0 0 0 REV__OR14I1|p.Q242Pfs*48|1|0.28|ENSG00000189181|chr1:248681580-248681581|-/G|frameshift_variant REV__OR14I1|p.Q242Pfs*48|1|0.28|ENSG00000189181|chr1:248681580-248681581|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 542.4879150390625 2 542.354825 1082.6951 NaN NaN NaN NaN NaN NaN NaN 166.57 1 166.57 166.07 167.07 0 0 0 0 0.22588 1 33949 33949 10.074 3.3508 1 + 7253 19200 4462 4466 7553 7553 0.15705803382184058 DLTKLKSFTV 10 Unmodified _DLTKLKSFTV_ 0 0 0 nc|ENSG00000118407|Q7Z7B0-3|FILIP1;nc|ENSG00000118407|Q7Z7B0-2|FILIP1;ENSG00000118407|ENST00000237172|FILIP1;FILIP1|p.I519*|1|0.32|ENSG00000118407|chr6:75314277-75314277|T/-|frameshift_variant nc|ENSG00000118407|Q7Z7B0-3|FILIP1 nc|ENSG00000118407|Q7Z7B0-3|FILIP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3344116210938 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 131.45 1 126.68 126.18 127.18 -4.7725 0 0 0 0.22588 1 25303 25303 5.7319 1.4026 1 7254 3033 4463 4467 7554 7554 0.09047140854363533 DLTLSLGHII 10 Unmodified _DLTLSLGHII_ 0 0 0 REV__FARSB|p.L514_L515insSLT|1|0.05|ENSG00000116120|chr2:222600003-222600004|-/AGTTAGTGA|inframe_insertion REV__FARSB|p.L514_L515insSLT|1|0.05|ENSG00000116120|chr2:222600003-222600004|-/AGTTAGTGA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2776489257812 2 541.316232 1080.61791 NaN NaN NaN NaN NaN NaN NaN 125.56 1 120.79 120.29 121.29 -4.7681 0 0 0 0.22588 1 24098 24098 5.7319 0.50118 1 + 7255 23522 4464 4468 7555 7555 0.08082585165857381 DLTLTAQSI 9 Unmodified _DLTLTAQSI_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16;REV__MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant REV__ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2438049316406 2 481.263665 960.512776 NaN NaN NaN NaN NaN NaN NaN 103.31 1 99.121 98.621 99.621 -4.1861 0 0 0 0.055781 1 20309 20309 49.554 9.3151 1 + 7256 18720;23888 4465 4469 7556 7556 0.030940439694290944 DLTPESCYYL 10 Unmodified _DLTPESCYYL_ 0 0 0 REV__nc|ENSG00000109339|P53779-2|MAPK10 REV__nc|ENSG00000109339|P53779-2|MAPK10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2772827148438 2 602.265547 1202.51654 NaN NaN NaN NaN NaN NaN NaN 110.27 1 110.27 109.77 110.77 0 0 0 0 0.22576 1 21687 21687 14.838 2.3067 1 + 7257 15160 4466 4470 7557 7557 -0.07661654319008449 DLTQLWVS 8 Unmodified _DLTQLWVS_ 0 0 0 REV__ENST00000555451.1_1_14:104166863-104169620:-|nuORF REV__ENST00000555451.1_1_14:104166863-104169620:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2532958984375 2 481.2531 960.491647 -0.15687 -7.5492E-05 0.28137 0.00013541 0.1245 5.9918E-05 481.2532178760344 109.54 0.66756 105.09 104.71 105.38 -4.4518 30 18 2 0 0 0 0.69031 1 21056 21056 15.847 1.2655 1 1373100 + 7258 22983 4467 4471 7558 7558 0.009820786605587273 DLTVALQAE 9 Unmodified _DLTVALQAE_ 0 0 0 ENSG00000065060|ENST00000192788|BLTP3A ENSG00000065060|ENST00000192788|BLTP3A ENSG00000065060|ENST00000192788|BLTP3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25115966796875 2 480.25584 958.497126 -0.37698 -0.00018105 0.26375 0.00012667 -0.11323 -5.4381E-05 480.2559420926776 36.078 1.7363 33.684 32.388 34.124 -2.3938 108 48 4 0 0 0 0.46541 1 6530 6530 21.747 1.293 1 138440000 7259 1351 4468 4472 7559 7559 0.016217574523693656 DLVAKLFY 8 Unmodified _DLVAKLFY_ 0 0 0 ENST00000433214.2_1_10:88753296-88760106:+|nuORF ENST00000433214.2_1_10:88753296-88760106:+|nuORF ENST00000433214.2_1_10:88753296-88760106:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 484.77618408203125 2 484.776211 967.537869 NaN NaN NaN NaN NaN NaN NaN 141.79 1 137.14 136.64 137.64 -4.6493 0 0 0 0.23366 1 28017 28017 0.62683 0.50396 1 7260 9807 4469 4473 7560 7560 0.052801435626633975 DLVEKLRR 8 Unmodified _DLVEKLRR_ 0 0 0 REV__nc|ENSG00000058453|Q5TZA2-2|CROCC REV__nc|ENSG00000058453|Q5TZA2-2|CROCC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.2187805175781 3 343.545219 1027.61383 0.68482 0.00023527 -0.47093 -0.00016178 0.21389 7.3482E-05 343.54500790021297 27.161 0.81247 25.378 25.096 25.909 -1.7821 39 22 2 0 0 0 0.88497 1 4833 4833 10.074 9.7669 1 4326900 + 7261 14129 4470 4474 7561 7561 0.10112540462819197 DLVHHFEKG 9 Unmodified _DLVHHFEKG_ 0 0 0 ENSG00000080200|ENST00000389622|CRYBG3;nc|ENSG00000080200|Q68DQ2-1|CRYBG3 ENSG00000080200|ENST00000389622|CRYBG3 ENSG00000080200|ENST00000389622|CRYBG3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2772216796875 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 123.98 1 123.98 123.48 124.48 0 0 0 0 0.19674 1 24440 24440 0.87518 0.60979 1 7262 1609 4471 4475 7562 7562 -0.0018031184229130304 DLVIEPSSP 9 Unmodified _DLVIEPSSP_ 0 0 0 REV__nc|ENSG00000123106|Q7Z6B0-3|CCDC91 REV__nc|ENSG00000123106|Q7Z6B0-3|CCDC91 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7238464355469 2 478.75039 955.486227 0.068598 3.2842E-05 1.1053 0.00052919 1.1739 0.00056203 478.75029067175603 128.19 0.68084 123.56 123.26 123.94 -4.6292 41 18 4 0 0 0 0.16442 1 25259 25259 42.095 4.1206 1 2406500 + 7263 15717 4472 4476 7563 7563 0.006703550781026024 DLVIEPSSP 9 Unmodified _DLVIEPSSP_ 0 0 0 REV__nc|ENSG00000123106|Q7Z6B0-3|CCDC91 REV__nc|ENSG00000123106|Q7Z6B0-3|CCDC91 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7229919433594 2 478.75039 955.486227 0.15225 7.2892E-05 -0.016633 -7.963E-06 0.13562 6.4929E-05 478.750249955229 128.43 0.60043 123.69 123.41 124.01 -4.7408 24 16 2 0 0 0 0.12183 1 24716 24716 48.346 2.3249 1 1418400 + 7264 15717 4472 4476 7564 7564 0.006703550781026024 DLVIEPSSP 9 Unmodified _DLVIEPSSP_ 0 0 0 REV__nc|ENSG00000123106|Q7Z6B0-3|CCDC91 REV__nc|ENSG00000123106|Q7Z6B0-3|CCDC91 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.75039 955.486227 0.15225 7.2892E-05 -0.016633 -7.963E-06 0.13562 6.4929E-05 478.750249955229 128.43 0.60043 123.69 123.41 124.01 -4.7408 0.036846 -0.00012848 NaN 48.346 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1418400 + 7265 15717 4472 4476 0.006703550781026024 DLVISLNIP 9 Unmodified _DLVISLNIP_ 0 0 0 ENSG00000162433|ENST00000327299|AK4 ENSG00000162433|ENST00000327299|AK4 ENSG00000162433|ENST00000327299|AK4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 492.7732849121094 2 492.292225 982.569897 0.27694 0.00013634 -0.23126 -0.00011385 0.045682 2.2489E-05 492.29205833258413 109.55 0.79151 109.55 109.13 109.92 0 56 22 3 0 0 0 0.33512 1 21506 21506 2.8827 0 1 9011000 7266 5333 4473 4477 7565 7565 0.07791511245784477 DLVISLNIP 9 Unmodified _DLVISLNIP_ 0 0 0 ENSG00000162433|ENST00000327299|AK4 ENSG00000162433|ENST00000327299|AK4 ENSG00000162433|ENST00000327299|AK4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 492.292225 982.569897 -0.034854 -1.7158E-05 0.30432 0.00014982 0.26947 0.00013266 492.29229568909255 113.67 1.0226 109.21 108.65 109.67 -4.4539 -0.084429 0.00027503 NaN 2.8827 77 28 4 NaN NaN NaN NaN 0 NaN NaN 0 9457600 7267 5333 4473 4477 0.07791511245784477 DLVISLNIP 9 Unmodified _DLVISLNIP_ 0 0 0 ENSG00000162433|ENST00000327299|AK4 ENSG00000162433|ENST00000327299|AK4 ENSG00000162433|ENST00000327299|AK4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 492.292225 982.569897 0.1322 6.508E-05 0.12667 6.236E-05 0.25887 0.00012744 492.29218535301806 113.74 0.96748 109.22 108.72 109.68 -4.5259 -0.081509 0.00010012 NaN 2.8827 69 27 3 NaN NaN NaN NaN 0 NaN NaN 0 9606400 7268 5333 4473 4477 0.07791511245784477 DLVISLNIP 9 Unmodified _DLVISLNIP_ 0 0 0 ENSG00000162433|ENST00000327299|AK4 ENSG00000162433|ENST00000327299|AK4 ENSG00000162433|ENST00000327299|AK4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 492.292225 982.569897 0.33949 0.00016713 -0.053605 -2.6389E-05 0.28589 0.00014074 492.2921146556471 113.49 1.0149 109.21 108.67 109.69 -4.2725 -0.084662 -7.7376E-05 NaN 2.8827 75 28 4 NaN NaN NaN NaN 0 NaN NaN 0 9443000 7269 5333 4473 4477 0.07791511245784477 DLVKKKKKRRK 11 Unmodified _DLVKKKKKRRK_ 0 0 0 REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 713.9302368164062 2 713.988269 1425.96199 NaN NaN NaN NaN NaN NaN NaN 166.12 1 161.33 160.83 161.83 -4.7898 0 0 0 0.23698 1 33331 33331 2.7352 1.4057 1 + 7270 15249 4474 4478 7566 7566 0.26604326384244814 DLVKQDYY 8 Unmodified _DLVKQDYY_ 0 0 0 ENST00000524636.1_1_11:30516841-30557583:-|nuORF;ENST00000525519.1_1_11:30473620-30557628:-|nuORF;nc|ENSG00000066382|Q15777-2|MPPED2;ENSG00000066382|ENST00000358117|MPPED2 ENST00000524636.1_1_11:30516841-30557583:-|nuORF ENST00000524636.1_1_11:30516841-30557583:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2715454101562 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 50.138 1 47.139 46.639 47.639 -2.999 0 0 0 0.2074 1 9178 9178 19.439 1.304 1 7271 1372 4475 4479 7567 7567 -0.022422425476179342 DLVLVKNEN 9 Unmodified _DLVLVKNEN_ 0 0 0 REV__CON__P02754 REV__CON__P02754 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2615966796875 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 119.14 1 114.5 114 115 -4.645 0 0 0 0.23508 1 22864 22864 8.7454 0.83525 1 + + 7272 13520 4476 4480 7568 7568 0.04629421752088092 DLVMALEGL 9 Unmodified _DLVMALEGL_ 0 0 0 REV__ENSG00000124194|ENST00000342560|GDAP1L1 REV__ENSG00000124194|ENST00000342560|GDAP1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24102783203125 2 480.757161 959.499769 0.17543 8.434E-05 -0.66975 -0.00032199 -0.49432 -0.00023765 480.75703179004836 97.377 0.71572 93.142 92.746 93.462 -4.2348 33 20 2 0 0 0 0.46541 1 18625 18625 21.747 0 1 1904800 + 7273 15759 4477 4481 7569 7569 0.01839889585698984 DLVPATSYSL 10 Unmodified _DLVPATSYSL_ 0 0 0 ENST00000558165.3_1_15:76552958-76553450:-|nuORF ENST00000558165.3_1_15:76552958-76553450:-|nuORF ENST00000558165.3_1_15:76552958-76553450:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2769165039062 2 533.276772 1064.53899 0.62849 0.00033516 -0.23486 -0.00012525 0.39363 0.00020991 533.2765762688794 86.232 1.0865 82.282 81.976 83.063 -3.9503 82 30 4 0 0 0 0.12551 1 16413 16413 8.7518 0 1 19406000 7274 11263 4478 4482 7570 7570 0.009303131409069465 DLVQTRCEM 9 Unmodified _DLVQTRCEM_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7929077148438 2 547.752084 1093.48961 NaN NaN NaN NaN NaN NaN NaN 133.42 1 128.54 128.04 129.04 -4.8726 0 0 0 0.22193 1 25631 25631 17.113 1.2657 1 7275 2136;12261 4479 4483 7571 7571 -0.05339041411184553 DLVRQFDELTH 11 Unmodified _DLVRQFDELTH_ 0 0 0 REV__ENST00000477706.1_1_X:53458466-53459266:-|nuORF REV__ENST00000477706.1_1_X:53458466-53459266:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23333740234375 3 458.233369 1371.67828 NaN NaN NaN NaN NaN NaN NaN 146.86 1 146.86 146.36 147.36 0 0 0 0 0.22632 1 29375 29375 0.026206 0 1 + 7276 14287 4480 4484 7572 7572 0.007306507582825361 DLVSDMWYMT 10 Unmodified _DLVSDMWYMT_ 0 0 0 REV__NID2|p.T1203M|1|0.35|ENSG00000087303|chr14:52010990-52010990|G/A|missense_variant REV__NID2|p.T1203M|1|0.35|ENSG00000087303|chr14:52010990-52010990|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7639770507812 2 630.7674 1259.52025 NaN NaN NaN NaN NaN NaN NaN 162.31 1 162.31 161.81 162.81 0 0 0 0 0.22588 1 32625 32625 3.5965 0 1 + 7277 24359 4481 4485 7573 7573 -0.0991330781682791 DLVSMIGPP 9 Unmodified _DLVSMIGPP_ 0 0 0 REV__ENSG00000142347|ENST00000644032|MYO1F REV__ENSG00000142347|ENST00000644032|MYO1F MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1617736816406 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 105.95 1 105.95 105.45 106.45 0 0 0 0 0.19661 1 20826 20826 0.073264 0 1 + 7278 16667 4482 4486 7574 7574 0.006916204142157767 DLVSMIGPP 9 Unmodified _DLVSMIGPP_ 0 0 0 REV__ENSG00000142347|ENST00000644032|MYO1F REV__ENSG00000142347|ENST00000644032|MYO1F MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16534423828125 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 105.99 1 105.99 105.49 106.49 0 0 0 0 0.19638 1 20832 20832 0.073264 0 1 + 7279 16667 4482 4486 7575 7575 0.006916204142157767 DLVVNYDFP 9 Unmodified _DLVVNYDFP_ 0 0 0 DDX28|p.E467D|1|0.33|ENSG00000182810|chr16:68021802-68021802|C/A|missense_variant DDX28|p.E467D|1|0.33|ENSG00000182810|chr16:68021802-68021802|C/A|missense_variant DDX28|p.E467D|1|0.33|ENSG00000182810|chr16:68021802-68021802|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2655029296875 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 156.58 1 151.29 150.79 151.79 -5.2854 0 0 0 0.19643 1 30378 30378 0.40827 0.2854 1 7280 800 4483 4487 7576 7576 -0.02425956030560883 DLWAGQQLL 9 Unmodified _DLWAGQQLL_ 0 0 0 nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R;nc|ENSG00000077238|P24394-2|IL4R;IL4R|p.E684Kfs*3|1|0.54|ENSG00000077238|chr16:27363398-27363398|G/-|frameshift_variant nc|ENSG00000077238|P24394-3|IL4R nc|ENSG00000077238|P24394-3|IL4R MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2626342773438 2 522.279649 1042.54475 -0.12053 -6.2948E-05 0.64211 0.00033536 0.52159 0.00027241 522.2798767458386 126.73 0.77013 122.11 121.73 122.5 -4.6172 45 21 3 0 0 0 0.17664 1 25011 25011 4.7159 0 1 3638600 7281 1556 4484 4488 7577 7577 0.025174564432290936 DLWDEAEDQS 10 Unmodified _DLWDEAEDQS_ 0 0 0 REV__ENST00000582201.5_1_17:62781409-62811241:-|nuORF;REV__PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant REV__PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 403.12493896484375 3 403.163169 1206.46768 0.17832 7.189E-05 -2.1566 -0.00086948 -1.9783 -0.00079758 403.16242517863725 103.84 0.55301 99.489 99.386 99.939 -4.346 17 15 2 0 0 0 0.76317 1 19919 19919 1.5923 0.89462 1 741220 + 7282 23248;19723 4485 4489 7578 7578 -0.12729851354424682 DLWDWFESF 9 Unmodified _DLWDWFESF_ 0 0 0 ENST00000467302.5_1_1:109236213-109238974:+|nuORF;nc|ENSG00000134186|Q5VTL8-2|PRPF38B;PRPF38B|p.R352Lfs*11|1|0.04|ENSG00000134186|chr1:108699431-108699432|-/TCTT|frameshift_variant;PRPF38B|p.K487Nfs*44|1|0.41|ENSG00000134186|chr1:108699834-108699834|A/-|frameshift_variant;ENSG00000134186|ENST00000370025|PRPF38B ENST00000467302.5_1_1:109236213-109238974:+|nuORF ENST00000467302.5_1_1:109236213-109238974:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7783203125 2 622.766571 1243.51859 NaN NaN NaN NaN NaN NaN NaN 143.37 1 138.35 137.85 138.85 -5.0261 0 0 0 0.23508 1 27640 27640 7.9102 0.62092 1 7283 3831 4486 4490 7579 7579 -0.09342857518913661 DLWRNPLQY 9 Unmodified _DLWRNPLQY_ 0 0 0 ENSG00000258992|ENST00000451548|TSPY1;ENSG00000236424|ENST00000428845|TSPY10;ENSG00000229549|ENST00000287721|TSPY8;ENSG00000228927|ENST00000457222|TSPY3;ENSG00000168757|ENST00000320701|TSPY2;ENSG00000238074|ENST00000440215|TSPY9;ENSG00000233803|ENST00000426950|TSPY4 ENSG00000258992|ENST00000451548|TSPY1 ENSG00000258992|ENST00000451548|TSPY1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2970581054688 2 602.809105 1203.60366 0.91437 0.00055119 -1.0169 -0.00061299 -0.10252 -6.18E-05 602.8085313829614 73.817 0.44669 70.452 70.263 70.71 -3.3643 22 12 2 0 0 0 0.80521 1 14418 14418 6.7232 0 1 3409000 7284 5931 4487 4491 7580 7580 0.009999327375680878 DLWSLGVILY 10 Unmodified _DLWSLGVILY_ 0 0 0 nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5;ENST00000587416.5_1_19:2040939-2042512:-|nuORF;nc|ENSG00000099875|Q9HBH9-2|MKNK2;ENSG00000099875|ENST00000250896|MKNK2;nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4 nc|ENSG00000100784|O75582-3|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2680053710938 2 589.826432 1177.63831 0.19085 0.00011257 -3.6659 -0.0021623 -3.4751 -0.0020497 590.324243735934 131.24 0.35535 126.47 126.32 126.67 -4.7725 12 9 2 0 0 0 0.51311 1 25285 25285 0.043787 0 1 1105600 7285 2013 4488 4492 7581 7581 0.05659755825672619 DLWSSMSKRRK 11 Unmodified _DLWSSMSKRRK_ 0 0 0 REV__SAGE1|p.I823Lfs*5|1|0.48|ENSG00000181433|chrX:135911895-135911895|G/-|frameshift_variant REV__SAGE1|p.I823Lfs*5|1|0.48|ENSG00000181433|chrX:135911895-135911895|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2498779296875 3 465.250477 1392.7296 NaN NaN NaN NaN NaN NaN NaN 172.36 1 172.36 171.86 172.86 0 0 0 0 0.22632 1 35579 35579 3.0723 2.4869 1 + 7286 18731 4489 4493 7582 7582 0.048946962513355174 DLYFRPLY 8 Unmodified _DLYFRPLY_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7935791015625 2 543.784567 1085.55458 -0.27859 -0.00015149 -2.831 -0.0015395 -3.1096 -0.001691 543.7831455826388 108.54 0.66035 104.22 104.01 104.67 -4.32 24 18 2 0 0 0 0.60622 2 21377 21377;21435 21.747 3.6117 1 1657100 7287 2220 4490 4494 7583;7584 7583 0.015226444486188484 DLYLLLRRD 9 Unmodified _DLYLLLRRD_ 0 0 0 nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 588.8399658203125 2 588.840405 1175.66626 NaN NaN NaN NaN NaN NaN NaN 173.69 1 168.9 168.4 169.4 -4.7898 0 0 0 0.19687 1 35449 35449 8.1555 7.6391 1 7288 4622 4491 4495 7585 7585 0.08545078805764206 DLYSAPQPA 9 Unmodified _DLYSAPQPA_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2350158691406 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 170.32 1 165.45 164.95 165.95 -4.873 0 0 0 0.23508 1 33698 33698 7.9102 0 1 7289 7353 4492 4496 7586 7586 -0.02654798236142142 DLYSFQNHE 9 Unmodified _DLYSFQNHE_ 0 0 0 ZNF442|p.F472L|1|0.28|ENSG00000198342|chr19:12350169-12350169|G/T|missense_variant ZNF442|p.F472L|1|0.28|ENSG00000198342|chr19:12350169-12350169|G/T|missense_variant ZNF442|p.F472L|1|0.28|ENSG00000198342|chr19:12350169-12350169|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3206176757812 2 576.751453 1151.48835 NaN NaN NaN NaN NaN NaN NaN 110.61 1 110.61 110.11 111.11 0 0 0 0 0.23508 1 21755 21755 10.824 0 1 7290 26619 4493 4497 7587 7587 -0.08133216184091907 DLYVEKPRIE 10 Unmodified _DLYVEKPRIE_ 0 0 0 REV__SYK|p.E442Sfs*31|1|0.11|ENSG00000165025|chr9:90877711-90877711|C/-|frameshift_variant REV__SYK|p.E442Sfs*31|1|0.11|ENSG00000165025|chr9:90877711-90877711|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7523803710938 2 631.342978 1260.6714 0.40224 0.00025395 4.4129 0.002786 4.8151 0.00304 631.8479648189734 131.94 0.27864 131.94 131.75 132.03 0 12 7 3 0 0 0 0.89145 1 26049 26049 4.897 0 1 3479100 + 7291 17735 4494 4498 7588 7588 0.051493378777195176 DMAHDTAI 8 Unmodified _DMAHDTAI_ 0 0 0 REV__ENSG00000078814|ENST00000262873|MYH7B REV__ENSG00000078814|ENST00000262873|MYH7B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2222595214844 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 67.409 1 64.301 63.801 64.801 -3.1086 0 0 0 0.2343 1 13075 13075 0.62683 0 1 + 7292 14388 4495 4499 7589 7589 -0.07147286693464139 DMAMQLSTGQY 11 Unmodified _DMAMQLSTGQY_ 0 0 0 REV__chr16:2998979-2999902|177|19.34|0.95|4.35|+|0|GREP1,GREP1|1 REV__chr16:2998979-2999902|177|19.34|0.95|4.35|+|0|GREP1,GREP1|1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7682495117188 2 622.767931 1243.52131 0.68585 0.00042712 -0.23569 -0.00014678 0.45016 0.00028034 622.7677148596587 39.442 0.45938 36.893 36.681 37.14 -2.5491 29 12 3 0 0 0 0.35625 2 7352 7308;7352 51.63 3.8811 1 1785300 + 7293 13419 4496 4500 7590;7591 7591 -0.09071093447892054 DMAMQLSTGQY 11 Unmodified _DMAMQLSTGQY_ 0 0 0 REV__chr16:2998979-2999902|177|19.34|0.95|4.35|+|0|GREP1,GREP1|1 REV__chr16:2998979-2999902|177|19.34|0.95|4.35|+|0|GREP1,GREP1|1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.768310546875 2 622.767931 1243.52131 0.26085 0.00016245 0.16347 0.0001018 0.42431 0.00026425 622.768067662659 39.377 0.45097 36.935 36.649 37.1 -2.4419 27 12 3 0 0 0 0.35468 1 7030 7030 55.503 13.547 1 1284500 + 7294 13419 4496 4500 7592 7592 -0.09071093447892054 DMAMQLSTGQY 11 Unmodified _DMAMQLSTGQY_ 0 0 0 REV__chr16:2998979-2999902|177|19.34|0.95|4.35|+|0|GREP1,GREP1|1 REV__chr16:2998979-2999902|177|19.34|0.95|4.35|+|0|GREP1,GREP1|1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7542114257812 2 622.767931 1243.52131 0.34693 0.00021605 0.25651 0.00015975 0.60343 0.0003758 622.7681184607972 39.253 0.55861 36.848 36.545 37.103 -2.4049 25 15 2 0 0 0 0.4577 1 7015 7015 40.239 10.399 1 1174400 + 7295 13419 4496 4500 7593 7593 -0.09071093447892054 DMAMQLSTGQY 11 Unmodified _DMAMQLSTGQY_ 0 0 0 REV__chr16:2998979-2999902|177|19.34|0.95|4.35|+|0|GREP1,GREP1|1 REV__chr16:2998979-2999902|177|19.34|0.95|4.35|+|0|GREP1,GREP1|1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 622.767931 1243.52131 0.34693 0.00021605 0.25651 0.00015975 0.60343 0.0003758 622.7681184607972 39.253 0.55861 36.848 36.545 37.103 -2.4049 -0.007298 0.00033232 NaN 55.503 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1174400 + 7296 13419 4496 4500 -0.09071093447892054 DMCACFKND 9 Unmodified _DMCACFKND_ 0 0 0 nc|ENSG00000115977|Q2M2I8-2|AAK1 nc|ENSG00000115977|Q2M2I8-2|AAK1 nc|ENSG00000115977|Q2M2I8-2|AAK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6924438476562 2 523.690638 1045.36672 NaN NaN NaN NaN NaN NaN NaN 168.47 1 168.47 167.97 168.97 0 0 0 0 0.19652 1 34504 34504 0.073264 0 1 7297 12293 4497 4501 7594 7594 -0.1541462113414127 DMDDYNPIVY 10 Unmodified _DMDDYNPIVY_ 0 0 0 REV__ENSG00000106624|ENST00000223357|AEBP1 REV__ENSG00000106624|ENST00000223357|AEBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7615966796875 2 622.760629 1243.5067 0.065959 4.1077E-05 1.4207 0.00088478 1.4867 0.00092586 622.7624383071915 67.998 0.20982 67.998 67.826 68.035 0 6 5 2 0 0 0 0.75565 1 13135 13135 3.9444 0.94915 1 1232700 + 7298 15059 4498 4502 7595 7595 -0.10530842324419609 DMDDYNPIVY 10 Unmodified _DMDDYNPIVY_ 0 0 0 REV__ENSG00000106624|ENST00000223357|AEBP1 REV__ENSG00000106624|ENST00000223357|AEBP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7591552734375 2 622.760629 1243.5067 NaN NaN NaN NaN NaN NaN NaN 72.549 1 69.238 68.738 69.738 -3.3107 0 0 0 2.8426 1 14139 14139 0.26539 0.23918 1 + 7299 15059 4498 4502 7596 7596 -0.10530842324419609 DMDGKIKPG 9 Unmodified _DMDGKIKPG_ 0 0 0 REV__AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant REV__AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2542724609375 2 480.744585 959.474617 0.35675 0.00017151 -0.48306 -0.00023223 -0.12631 -6.0721E-05 480.7444781888456 29.336 0.87691 27.443 26.979 27.856 -1.8928 55 24 3 0 0 0 0.6329 1 4899 4899 10.824 0 1 2215900 + 7300 12987 4499 4503 7597 7597 -0.006741652168898327 DMDKVLLKY 9 Unmodified _DMDKVLLKY_ 0 0 0 ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;MEF2D|p.Q182Pfs*20|1|0.31|ENSG00000116604|chr1:156479648-156479649|-/G|frameshift_variant;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;MEF2C|p.T70M|1|0.34|ENSG00000081189|chr5:88804647-88804647|G/A|missense_variant ENSG00000116604|ENST00000348159|MEF2D ENSG00000116604|ENST00000348159|MEF2D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2129211425781 3 375.538854 1123.59473 -0.73005 -0.00027416 0.64244 0.00024126 -0.087611 -3.2901E-05 375.539083920316 108.67 0.59242 104.35 104.07 104.67 -4.32 28 16 3 0 0 0 0.54058 1 21387 21387 12.241 8.3643 1 1356700 7301 2936 4500 4504 7598 7598 0.03787823056882189 DMELLNVK 8 Unmodified _DMELLNVK_ 0 0 0 REV__nc|ENSG00000149554|O14757-2|CHEK1 REV__nc|ENSG00000149554|O14757-2|CHEK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24322509765625 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 83.434 1 83.434 82.934 83.934 0 0 0 0 0.22674 1 16269 16269 18.373 18.122 1 + 7302 17012 4501 4505 7599 7599 0.013190054429287557 DMFDEYVK 8 Unmodified _DMFDEYVK_ 0 0 0 nc|ENSG00000175727|Q9HAP2-2|MLXIP;ENSG00000175727|ENST00000319080|MLXIP nc|ENSG00000175727|Q9HAP2-2|MLXIP nc|ENSG00000175727|Q9HAP2-2|MLXIP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.696044921875 2 523.7286 1045.44265 NaN NaN NaN NaN NaN NaN NaN 108.08 1 108.08 107.58 108.58 0 0 0 0 0.21486 1 21253 21253 11.64 0.52583 1 7303 6430 4502 4506 7600 7600 -0.07825577690709906 DMHWIRWYLWI 11 Unmodified _DMHWIRWYLWI_ 0 0 0 REV__ENST00000467733.1_1_3:156262080-156272878:-|nuORF REV__ENST00000467733.1_1_3:156262080-156272878:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 810.0856323242188 2 809.903014 1617.79147 NaN NaN NaN NaN NaN NaN NaN 175.15 1 170.26 169.76 170.76 -4.8845 0 0 0 0.23698 1 34823 34823 0.35063 0.043601 1 + 7304 15390 4503 4507 7601 7601 0.007290476704838511 DMLALLFTY 9 Unmodified _DMLALLFTY_ 0 0 0 REV__ENSG00000149488|ENST00000358864|TMC2 REV__ENSG00000149488|ENST00000358864|TMC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.781982421875 2 543.780636 1085.54672 NaN NaN NaN NaN NaN NaN NaN 85.572 1 81.908 81.408 82.408 -3.6641 0 0 0 0.19638 1 16731 16731 2.6312 0.70373 1 + 7305 17008 4504 4508 7602 7602 0.007367491368313495 DMLFLVLLD 9 Unmodified _DMLFLVLLD_ 0 0 0 REV__DEPDC7|p.F420Lfs*11|1|0.37|ENSG00000121690|chr11:33032786-33032786|T/-|frameshift_variant REV__DEPDC7|p.F420Lfs*11|1|0.37|ENSG00000121690|chr11:33032786-33032786|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015380859375 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 141.37 1 136.5 136 137 -4.8678 0 0 0 0.23508 1 27281 27281 7.609 0.88579 1 + 7306 13668 4505 4509 7603 7603 0.04233322170921383 DMNFLKRY 8 Unmodified _DMNFLKRY_ 0 0 0 ENSG00000110848|ENST00000228434|CD69 ENSG00000110848|ENST00000228434|CD69 ENSG00000110848|ENST00000228434|CD69 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7915649414062 2 543.773677 1085.5328 NaN NaN NaN NaN NaN NaN NaN 150.89 1 146.15 145.65 146.65 -4.7323 0 0 0 0.21486 1 29970 29970 9.3474 0.75416 1 7307 2591 4506 4510 7604 7604 -0.006544835715885711 DMQYQLAVR 9 Unmodified _DMQYQLAVR_ 0 0 0 REV__ENSG00000161652|ENST00000293405|IZUMO2 REV__ENSG00000161652|ENST00000293405|IZUMO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2132568359375 3 375.190336 1122.54918 -0.49629 -0.0001862 -1.5183 -0.00056965 -2.0146 -0.00075585 375.18980748924287 68.054 0.57631 68.054 67.963 68.539 0 18 15 2 0 0 0 0.69394 1 13163 13163 6.6304 0.0069188 1 1136500 + 7308 17463 4507 4511 7605 7605 -0.007194024055252157 DMQYQLAVR 9 Unmodified _DMQYQLAVR_ 0 0 0 REV__ENSG00000161652|ENST00000293405|IZUMO2 REV__ENSG00000161652|ENST00000293405|IZUMO2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.190336 1122.54918 0.31891 0.00011965 -3.0108 -0.0011296 -2.6919 -0.00101 375.18919981975836 71.624 0.56469 67.997 67.737 68.301 -3.6275 -0.037439 -0.00044546 NaN 6.6304 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1184400 + 7309 17463 4507 4511 -0.007194024055252157 DMQYQLAVR 9 Unmodified _DMQYQLAVR_ 0 0 0 REV__ENSG00000161652|ENST00000293405|IZUMO2 REV__ENSG00000161652|ENST00000293405|IZUMO2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 375.190336 1122.54918 -0.32957 -0.00012365 -2.5668 -0.00096303 -2.8964 -0.0010867 375.52365908362316 71.518 0.52827 68.051 67.838 68.366 -3.467 0.017274 5.4287E-05 NaN 6.6304 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1178200 + 7310 17463 4507 4511 -0.007194024055252157 DMTAADVGVT 10 Unmodified _DMTAADVGVT_ 0 0 0 REV__RICTOR|p.T1246A|1|0.27|ENSG00000164327|chr5:38950112-38950112|T/C|missense_variant REV__RICTOR|p.T1246A|1|0.27|ENSG00000164327|chr5:38950112-38950112|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2529296875 2 490.223682 978.432811 NaN NaN NaN NaN NaN NaN NaN 97.579 1 93.481 92.981 93.981 -4.0978 0 0 0 0.21574 1 19150 19150 25.399 1.3787 1 + 7311 24566 4508 4512 7606 7606 -0.057267656960675595 DMTVNERGY 9 Unmodified _DMTVNERGY_ 0 0 0 REV__ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant REV__ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 542.7359619140625 2 542.740031 1083.46551 NaN NaN NaN NaN NaN NaN NaN 86.281 1 82.331 81.831 82.831 -3.9503 0 0 0 0.19674 1 16423 16423 1.2148 0.36989 1 + 7312 12895 4509 4513 7607 7607 -0.07288558573213777 DMWILFFLWLW 11 Unmodified _DMWILFFLWLW_ 0 0 0 ENSG00000204642|ENST00000259951|HLA-F ENSG00000204642|ENST00000259951|HLA-F ENSG00000204642|ENST00000259951|HLA-F MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3735961914062 2 785.401784 1568.78901 NaN NaN NaN NaN NaN NaN NaN 172.69 1 172.69 172.19 173.19 0 0 0 0 0.23698 1 35664 35664 1.4819 0.15237 1 7313 7601 4510 4514 7608 7608 0.027371992128337297 DNCLSEDMA 9 Unmodified _DNCLSEDMA_ 0 0 0 ENSG00000171722|ENST00000367935|SPATA46 ENSG00000171722|ENST00000367935|SPATA46 ENSG00000171722|ENST00000367935|SPATA46 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.9987487792969 3 333.124892 996.352847 -0.43802 -0.00014592 -0.16096 -5.3621E-05 -0.59898 -0.00019954 333.1249818602864 63.273 0.55181 60.017 59.778 60.329 -3.2567 27 15 3 0 0 0 0.88284 1 11857 11857 2.4985 2.4985 1 1139200 7314 6160 4511 4515 7609 7609 -0.14547575361575582 DNCLSEDMA 9 Unmodified _DNCLSEDMA_ 0 0 0 ENSG00000171722|ENST00000367935|SPATA46 ENSG00000171722|ENST00000367935|SPATA46 ENSG00000171722|ENST00000367935|SPATA46 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 333.124892 996.352847 -0.20908 -6.965E-05 -0.041474 -1.3816E-05 -0.25056 -8.3466E-05 333.12491699100065 62.859 0.3807 59.898 59.775 60.155 -2.9614 -0.059316 4.2939E-05 NaN 2.4985 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1142900 7315 6160 4511 4515 -0.14547575361575582 DNDFMILTL 9 Unmodified _DNDFMILTL_ 0 0 0 CELSR2-KIAA1324|1|fusion;ENST00000490758.6_1_1:109716345-109734117:+|nuORF;ENST00000369936.2_1_1:109730792-109745631:+|nuORF;ENST00000369938.5_1_1:109730226-109745631:+|nuORF;nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;ENST00000527996.5_1_1:109656894-109745573:+|nuORF;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1 CELSR2-KIAA1324|1|fusion CELSR2-KIAA1324|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.264892578125 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 113.13 1 108.86 108.36 109.36 -4.2725 0 0 0 0.1599 1 21786 21786 29.082 8.628 1 7316 478 4512 4516 7610 7610 -0.02089029248213592 DNDYDEEDDD 10 Unmodified _DNDYDEEDDD_ 0 0 0 REV__CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant REV__CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7752075195312 2 622.689109 1243.36367 NaN NaN NaN NaN NaN NaN NaN 96.037 1 96.037 95.537 96.537 0 0 0 0 2.8426 1 18814 18814 0.0013812 0.0008168 1 + 7317 13397 4513 4517 7611 7611 -0.24828222972610092 DNDYDEEDDD 10 Unmodified _DNDYDEEDDD_ 0 0 0 REV__CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant REV__CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.751953125 2 622.689109 1243.36367 NaN NaN NaN NaN NaN NaN NaN 100.77 1 96.475 95.975 96.975 -4.297 0 0 0 0.22588 1 19279 19279 0.35063 0.043601 1 + 7318 13397 4513 4517 7612 7612 -0.24828222972610092 DNKFCACMD 9 Unmodified _DNKFCACMD_ 0 0 0 REV__nc|ENSG00000115977|Q2M2I8-2|AAK1 REV__nc|ENSG00000115977|Q2M2I8-2|AAK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6943359375 2 523.690638 1045.36672 NaN NaN NaN NaN NaN NaN NaN 135.67 1 130.84 130.34 131.34 -4.8307 0 0 0 0.1963 1 26122 26122 0.20686 0.13359 1 + 7319 24011 4514 4518 7613 7613 -0.1541462113414127 DNKLYKQVA 9 Unmodified _DNKLYKQVA_ 0 0 0 REV__ENSG00000138892|ENST00000433387|TTLL8 REV__ENSG00000138892|ENST00000433387|TTLL8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 95.354 1 91.305 90.805 91.805 -4.0496 0 0 0 0.23508 1 18690 18690 11.495 4.8643 1 + 7320 16499 4515 4519 7614 7614 0.0461712798901317 DNLYFVMDY 9 Unmodified _DNLYFVMDY_ 0 0 0 LATS1|p.Y808Nfs*12|1|0.09|ENSG00000131023|chr6:149680046-149680047|-/ATTTATT|frameshift_variant;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;LATS1|p.F1039Lfs*19|1|0.19|ENSG00000131023|chr6:149662005-149662005|A/-|frameshift_variant;ENSG00000131023|ENST00000543571|LATS1 LATS1|p.Y808Nfs*12|1|0.09|ENSG00000131023|chr6:149680046-149680047|-/ATTTATT|frameshift_variant LATS1|p.Y808Nfs*12|1|0.09|ENSG00000131023|chr6:149680046-149680047|-/ATTTATT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2544555664062 2 590.254982 1178.49541 NaN NaN NaN NaN NaN NaN NaN 27.464 1 25.682 25.182 26.182 -1.7821 0 0 0 0.19626 1 4882 4882 0.073264 0 1 7321 3656 4516 4520 7615 7615 -0.0866961962788082 DNMIYCDTRN 10 Unmodified _DNMIYCDTRN_ 0 0 0 REV__ENSG00000124177|ENST00000373233|CHD6 REV__ENSG00000124177|ENST00000373233|CHD6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.753173828125 2 622.755355 1243.49616 NaN NaN NaN NaN NaN NaN NaN 32.695 1 30.464 29.964 30.964 -2.2305 0 0 0 0.22588 1 5965 5965 3.2813 0.28607 1 + 7322 15756 4517 4521 7616 7616 -0.11585148250469501 DNPFTESEW 9 Unmodified _DNPFTESEW_ 0 0 0 REV__PLCG2|p.R564W|1|0.41|ENSG00000197943|chr16:81908548-81908548|C/T|missense_variant REV__PLCG2|p.R564W|1|0.41|ENSG00000197943|chr16:81908548-81908548|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.20465087890625 3 375.489216 1123.44582 -0.53399 -0.00020051 -1.2783 -0.00047998 -1.8123 -0.00068049 375.48852459877355 35.364 0.4636 32.97 32.774 33.238 -2.3938 15 12 2 0 0 0 0.87876 1 6505 6505 1.7423 0.78 1 1206700 + 7323 24480 4518 4522 7617 7617 -0.11096611312314053 DNQSRLQRY 9 Unmodified _DNQSRLQRY_ 0 0 0 NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant;ENSG00000069248|ENST00000261396|NUP133 NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2720947265625 2 590.296893 1178.57923 NaN NaN NaN NaN NaN NaN NaN 119.85 1 115.32 114.82 115.82 -4.5221 0 0 0 0.23508 1 23632 23632 7.2892 1.0834 1 7324 1414 4519 4523 7618 7618 -0.0029132741597095446 DNRGFDGERGG 11 Unmodified _DNRGFDGERGG_ 0 0 0 REV__ENST00000444886.1_1_9:128358162-128358726:+|nuORF REV__ENST00000444886.1_1_9:128358162-128358726:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2582397460938 2 590.260508 1178.50646 NaN NaN NaN NaN NaN NaN NaN 168.23 1 163.34 162.84 163.84 -4.8916 0 0 0 0.22632 1 33155 33155 0.172 0.14579 1 + 7325 21743 4520 4524 7619 7619 -0.07565081209418167 DNRLSFSISPH 11 Unmodified _DNRLSFSISPH_ 0 0 0 REV__MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant REV__MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2381896972656 3 424.882559 1271.62585 -1.6374 -0.00069571 2.585 0.0010983 0.94759 0.00040262 425.2171543159033 17.134 0.38799 15.619 15.346 15.734 -1.5148 17 10 3 0 0 0 0.96173 1 2453 2453 4.1166 1.3814 1 210870 + 7326 15590 4521 4525 7620 7620 0.0009011241531879932 DNSATVAK 8 Unmodified _DNSATVAK_ 0 0 0 REV__nc|ENSG00000106078|O75128-6|COBL REV__nc|ENSG00000106078|O75128-6|COBL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 402.884765625 2 403.20615 804.397747 NaN NaN NaN NaN NaN NaN NaN 91.782 1 87.857 87.357 88.357 -3.9251 0 0 0 0.23664 1 17969 17969 3.2813 0 1 + 7327 13470 4522 4526 7621 7621 -0.012276404417207232 DNSGCDAPGN 10 Unmodified _DNSGCDAPGN_ 0 0 0 nc|ENSG00000139218|Q99590-2|SCAF11;ENSG00000139218|ENST00000369367|SCAF11;SCAF11|p.Q367Afs*32|1|0.18|ENSG00000139218|chr12:45928603-45928604|-/T|frameshift_variant;SCAF11|p.L495Tfs*9|1|0.07|ENSG00000139218|chr12:45928218-45928219|-/T|frameshift_variant;SCAF11|p.T602Qfs*5|1|0.33|ENSG00000139218|chr12:45927897-45927897|T/-|frameshift_variant;SCAF11|p.K853Rfs*46|1|0.06|ENSG00000139218|chr12:45927143-45927143|T/-|frameshift_variant nc|ENSG00000139218|Q99590-2|SCAF11 nc|ENSG00000139218|Q99590-2|SCAF11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.23858642578125 3 317.115384 948.324324 NaN NaN NaN NaN NaN NaN NaN 8.1289 1 7.4498 6.9498 7.9498 -0.67913 0 0 0 0.22588 1 812 812 0.15932 0.15932 1 7328 4231 4523 4527 7622 7622 -0.1519055694649296 DNSGCDAPGN 10 Unmodified _DNSGCDAPGN_ 0 0 0 nc|ENSG00000139218|Q99590-2|SCAF11;ENSG00000139218|ENST00000369367|SCAF11;SCAF11|p.Q367Afs*32|1|0.18|ENSG00000139218|chr12:45928603-45928604|-/T|frameshift_variant;SCAF11|p.L495Tfs*9|1|0.07|ENSG00000139218|chr12:45928218-45928219|-/T|frameshift_variant;SCAF11|p.T602Qfs*5|1|0.33|ENSG00000139218|chr12:45927897-45927897|T/-|frameshift_variant;SCAF11|p.K853Rfs*46|1|0.06|ENSG00000139218|chr12:45927143-45927143|T/-|frameshift_variant nc|ENSG00000139218|Q99590-2|SCAF11 nc|ENSG00000139218|Q99590-2|SCAF11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.15496826171875 3 317.115384 948.324324 NaN NaN NaN NaN NaN NaN NaN 13.384 1 12.211 11.711 12.711 -1.173 0 0 0 0.22588 1 1731 1731 0.15932 0.15932 1 7329 4231 4523 4527 7623 7623 -0.1519055694649296 DNTAMFRFDK 10 Unmodified _DNTAMFRFDK_ 0 0 0 REV__ENST00000541058.1_1_12:67663497-67675834:+|nuORF REV__ENST00000541058.1_1_12:67663497-67675834:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7589111328125 2 622.790055 1243.56556 NaN NaN NaN NaN NaN NaN NaN 153.39 1 148.12 147.62 148.62 -5.2669 0 0 0 2.8426 1 29730 29730 0.043787 0 1 + 7330 13251 4524 4528 7624 7624 -0.04648321239415054 DNVDLRQTY 9 Unmodified _DNVDLRQTY_ 0 0 0 nc|ENSG00000180336|A2RUB1-5|MEIOC;ENSG00000180336|ENST00000409122|MEIOC nc|ENSG00000180336|A2RUB1-5|MEIOC nc|ENSG00000180336|A2RUB1-5|MEIOC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2149963378906 3 375.184127 1122.53055 NaN NaN NaN NaN NaN NaN NaN 92.17 1 92.17 91.67 92.67 0 0 0 0 0.23508 1 18019 18019 7.1017 0.37856 1 7331 6668 4525 4529 7625 7625 -0.025812407757030087 DNVNPIDGL 9 Unmodified _DNVNPIDGL_ 0 0 0 REV__ENST00000357871.6_1_Y:14514177-14532211:-|nuORF REV__ENST00000357871.6_1_Y:14514177-14532211:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73577880859375 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 129.41 1 124.78 124.28 125.28 -4.6292 0 0 0 0.22621 1 25503 25503 15.847 1.2655 1 + 7332 20831 4526 4530 7626 7626 -0.018436997244748454 DNVNSFRIK 9 Unmodified _DNVNSFRIK_ 0 0 0 CON__Q95M17 CON__Q95M17 CON__Q95M17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 364.88128662109375 3 364.864729 1091.57236 NaN NaN NaN NaN NaN NaN NaN 85.403 1 81.739 81.239 82.239 -3.6641 0 0 0 0.19512 1 16697 16697 12.241 4.0851 1 + 7333 705 4527 4531 7627 7627 0.03023359703456663 DNWEYAKDGF 10 Unmodified _DNWEYAKDGF_ 0 0 0 REV__ACE2|p.L628F|1|0.6|ENSG00000130234|chrX:15570309-15570309|G/A|missense_variant REV__ACE2|p.L628F|1|0.6|ENSG00000130234|chrX:15570309-15570309|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7674560546875 2 622.76456 1243.51457 NaN NaN NaN NaN NaN NaN NaN 66.806 1 66.806 66.306 67.306 0 0 0 0 0.22588 1 12906 12906 5.7319 0.43497 1 + 7334 12914 4528 4532 7628 7628 -0.0974494701263211 DNWLWAVWLAV 11 Unmodified _DNWLWAVWLAV_ 0 0 0 REV__nc|ENSG00000128973|Q9NWW5-2|CLN6 REV__nc|ENSG00000128973|Q9NWW5-2|CLN6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23748779296875 3 458.239796 1371.69756 NaN NaN NaN NaN NaN NaN NaN 109.16 1 104.71 104.21 105.21 -4.4518 0 0 0 0.22632 1 20950 20950 0.03141 0 1 + 7335 15942 4529 4533 7629 7629 0.026576518398314875 DPAALFSVAA 10 Unmodified _DPAALFSVAA_ 0 0 0 nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2 nc|ENSG00000180264|Q7Z7M1|ADGRD2 nc|ENSG00000180264|Q7Z7M1|ADGRD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25323486328125 2 481.2531 960.491647 -0.065773 -3.1654E-05 0.43948 0.0002115 0.3737 0.00017985 481.2533288834899 70.197 0.63531 66.948 66.615 67.25 -3.2492 32 17 2 0 0 0 0.37773 1 13661 13661 32.305 3.8186 1 4295500 7336 6665 4530 4534 7630 7630 0.009820786605587273 DPADLAAGHP 10 Unmodified _DPADLAAGHP_ 0 0 0 ENSG00000178828|ENST00000375121|RNF186 ENSG00000178828|ENST00000375121|RNF186 ENSG00000178828|ENST00000375121|RNF186 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7851257324219 2 482.230156 962.445759 -0.2006 -9.6735E-05 -0.36214 -0.00017463 -0.56274 -0.00027137 482.22962034028745 45.599 1.1612 42.733 41.835 42.996 -2.8665 61 32 3 0 0 0 0.40256 1 8231 8231 30.637 0.41173 1 1131100 7337 6594 4531 4535 7631 7631 -0.036965665216712296 DPAGCHAPGP 10 Unmodified _DPAGCHAPGP_ 0 0 0 REV__nc|ENSG00000179832|Q8NDA8-3|MROH1 REV__nc|ENSG00000179832|Q8NDA8-3|MROH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53253173828125 2 461.197802 920.381051 0.55825 0.00025746 0.63291 0.0002919 1.1912 0.00054936 461.1980593841628 46.711 1.507 46.711 46.244 47.751 0 76 42 2 0 0 0 0.42868 1 8793 8793 1.0651 1.0651 1 7168500 + 7338 24190 4532 4536 7632 7632 -0.08232464599313971 DPAGCHAPGP 10 Unmodified _DPAGCHAPGP_ 0 0 0 REV__nc|ENSG00000179832|Q8NDA8-3|MROH1 REV__nc|ENSG00000179832|Q8NDA8-3|MROH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5350646972656 2 461.197802 920.381051 -0.011081 -5.1104E-06 1.089 0.00050223 1.0779 0.00049712 461.19826898195674 50.183 1.6158 47.184 46.479 48.095 -2.999 85 46 2 0 0 0 0.43819 1 9272 9272 1.0651 0 1 11788000 + 7339 24190 4532 4536 7633 7633 -0.08232464599313971 DPAGSDQLLK 10 Unmodified _DPAGSDQLLK_ 0 0 0 REV__ENST00000554231.5_1_14:74537838-74551097:-|nuORF REV__ENST00000554231.5_1_14:74537838-74551097:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.271240234375 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 160.41 1 155.18 154.68 155.68 -5.2299 0 0 0 2.8426 1 31145 31145 20.871 14.679 1 + 7340 15593 4533 4537 7634 7634 0.009925448553758542 DPAGSDQLLK 10 Unmodified _DPAGSDQLLK_ 0 0 0 REV__ENST00000554231.5_1_14:74537838-74551097:-|nuORF REV__ENST00000554231.5_1_14:74537838-74551097:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.271240234375 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 160.42 1 155.19 154.69 155.69 -5.2299 0 0 0 0.18733 1 31148 31148 30.637 1.555 1 + 7341 15593 4533 4537 7635 7635 0.009925448553758542 DPAGTPRWRWM 11 Unmodified _DPAGTPRWRWM_ 0 0 0 REV__ENST00000257940.6_1_12:56512880-56512925:+|nuORF REV__ENST00000257940.6_1_12:56512880-56512925:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.223876953125 3 458.224151 1371.65062 NaN NaN NaN NaN NaN NaN NaN 41.18 1 38.691 38.191 39.191 -2.4896 0 0 0 0.22632 1 7387 7387 3.0723 3.0409 1 + 7342 20145 4534 4538 7636 7636 -0.0203353098295338 DPAHTHPRL 9 Unmodified _DPAHTHPRL_ 0 0 0 ENST00000527564.1_1_4:102269031-102269525:+|nuORF ENST00000527564.1_1_4:102269031-102269525:+|nuORF ENST00000527564.1_1_4:102269031-102269525:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2747192382812 2 522.27269 1042.53083 NaN NaN NaN NaN NaN NaN NaN 100.5 1 96.507 96.007 97.007 -3.9895 0 0 0 0.19684 1 19308 19308 0.40827 0 1 7343 10928 4535 4539 7637 7637 0.01126223734809173 DPAKKTQL 8 Unmodified _DPAKKTQL_ 0 0 0 REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.2806701660156 2 450.761092 899.507631 -0.11535 -5.1993E-05 0.054761 2.4684E-05 -0.060585 -2.7309E-05 450.7610985586281 52.759 0.48357 49.664 49.484 49.967 -3.0954 20 13 2 0 0 0 1.0147 1 9725 9725 5.2307 2.9279 1 666800 + 7344 20878 4536 4540 7638 7638 0.05385784897487156 DPAWYQTWPG 10 Unmodified _DPAWYQTWPG_ 0 0 0 ENSG00000120896|ENST00000240123|SORBS3;ENST00000523402.5_1_8:22411983-22419017:+|nuORF;ENST00000517535.5_1_8:22411983-22423386:+|nuORF ENSG00000120896|ENST00000240123|SORBS3 ENSG00000120896|ENST00000240123|SORBS3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 407.5174255371094 3 407.517218 1219.52982 NaN NaN NaN NaN NaN NaN NaN 21.079 1 19.605 19.105 20.105 -1.4742 0 0 0 0.22588 1 3550 3550 1.9064 0.57673 1 7345 3160 4537 4541 7639 7639 -0.07116035424769507 DPCCGGCR 8 Unmodified _DPCCGGCR_ 0 0 0 REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3792724609375 1 810.26914 809.261863 0.61648 0.00049951 1.2783 0.0010358 1.8948 0.0015353 810.2708776933803 159.64 0.13791 154.36 154.31 154.45 -5.2712 5 3 2 0 0 0 8448 1 30990 30990 0 0 1 1235500 + 7346 18358 4538 4542 7640 7640 -0.1503969782003196 DPCQDFYSF 9 Unmodified _DPCQDFYSF_ 0 0 0 ECEL1|p.P567Hfs*48|2|0.32|ENSG00000171551|chr2:232482594-232482594|G/-|frameshift_variant;nc|ENSG00000171551|O95672-2|ECEL1;ENSG00000171551|ENST00000304546|ECEL1 ECEL1|p.P567Hfs*48|2|0.32|ENSG00000171551|chr2:232482594-232482594|G/-|frameshift_variant ECEL1|p.P567Hfs*48|2|0.32|ENSG00000171551|chr2:232482594-232482594|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2107238769531 3 374.479664 1120.41716 0.2009 7.5232E-05 -0.56937 -0.00021322 -0.36848 -0.00013799 374.4796395480641 34.14 1.5589 31.994 31.255 32.814 -2.1468 87 44 4 0 0 0 0.64764 1 5974 5974 0.073264 0.029476 1 963080 7347 909 4539 4543 7641 7641 -0.13823052213137998 DPDEMLESF 9 Unmodified _DPDEMLESF_ 0 0 0 REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.26611328125 2 541.720972 1081.42739 0.64748 0.00035075 0.89483 0.00048475 1.5423 0.0008355 541.7213509753477 81.115 0.532 81.115 80.874 81.406 0 22 14 2 0 0 0 0.76271 1 15792 15792 6.2058 0 1 1426600 + 7348 13860 4540 4544 7642 7642 -0.11006489278520348 DPDKLTGSQ 9 Unmodified _DPDKLTGSQ_ 0 0 0 REV__ENSG00000157152|ENST00000621198|SYN2 REV__ENSG00000157152|ENST00000621198|SYN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2485656738281 2 480.735271 959.45599 0.099132 4.7656E-05 0.00033381 1.6047E-07 0.099466 4.7817E-05 480.7352470842884 39.144 0.80424 36.739 36.369 37.173 -2.4049 40 22 2 0 0 0 0.77644 1 7020 7020 10.8 2.0541 1 1383300 + 7349 17285 4541 4545 7643 7643 -0.02536003587090363 DPDLNAVLY 9 Unmodified _DPDLNAVLY_ 0 0 0 ENSG00000243725|ENST00000371281|TTC4;ENST00000486621.1_1_1:55181548-55183334:+|nuORF ENSG00000243725|ENST00000371281|TTC4 ENSG00000243725|ENST00000371281|TTC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 510.7585754394531 2 510.25584 1018.49713 0.31175 0.00015907 -0.14794 -7.5488E-05 0.16381 8.3586E-05 510.25567549163463 151.58 1.054 146.4 145.96 147.02 -5.1759 64 29 3 0 0 0 0.54354 1 29442 29442 16.942 9.0321 1 3989300 7350 7873 4542 4546 7644 7644 -0.011382425476199387 DPDLNAVLY 9 Unmodified _DPDLNAVLY_ 0 0 0 ENSG00000243725|ENST00000371281|TTC4;ENST00000486621.1_1_1:55181548-55183334:+|nuORF ENSG00000243725|ENST00000371281|TTC4 ENSG00000243725|ENST00000371281|TTC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 510.25584 1018.49713 0.20533 0.00010477 -0.12446 -6.3508E-05 0.080868 4.1263E-05 510.2557671419881 145.9 1.0175 145.9 145.37 146.39 0 -0.35235 -0.0001954 NaN 16.942 56 28 3 NaN NaN NaN NaN 0 NaN NaN 0 4313600 7351 7873 4542 4546 -0.011382425476199387 DPDLNAVLY 9 Unmodified _DPDLNAVLY_ 0 0 0 ENSG00000243725|ENST00000371281|TTC4;ENST00000486621.1_1_1:55181548-55183334:+|nuORF ENSG00000243725|ENST00000371281|TTC4 ENSG00000243725|ENST00000371281|TTC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 510.25584 1018.49713 0.005945 3.0335E-06 0.1288 6.572E-05 0.13474 6.8754E-05 510.25586825919356 151.04 1.3351 146.29 145.8 147.13 -4.7523 0.041703 6.3059E-05 NaN 16.942 66 37 2 NaN NaN NaN NaN 0 NaN NaN 0 4774800 7352 7873 4542 4546 -0.011382425476199387 DPDLNAVLY 9 Unmodified _DPDLNAVLY_ 0 0 0 ENSG00000243725|ENST00000371281|TTC4;ENST00000486621.1_1_1:55181548-55183334:+|nuORF ENSG00000243725|ENST00000371281|TTC4 ENSG00000243725|ENST00000371281|TTC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 510.25584 1018.49713 -0.28941 -0.00014767 0.37672 0.00019222 0.087308 4.455E-05 510.25592726286226 151.64 1.4228 146.41 146.04 147.46 -5.2365 0.15902 0.00031607 NaN 16.942 68 39 3 NaN NaN NaN NaN 0 NaN NaN 0 4020700 7353 7873 4542 4546 -0.011382425476199387 DPDMTLPPA 9 Unmodified _DPDMTLPPA_ 0 0 0 ENSG00000148602|ENST00000372105|LRIT1;LRIT1|p.P59Rfs*109|1|0.15|ENSG00000148602|chr10:84237633-84237633|G/-|frameshift_variant ENSG00000148602|ENST00000372105|LRIT1 ENSG00000148602|ENST00000372105|LRIT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72381591796875 2 478.723318 955.432083 0.16304 7.8049E-05 0.71606 0.00034279 0.87909 0.00042084 478.72360444283004 84.341 2.4156 80.432 79.43 81.846 -3.9093 116 68 2 0 0 0 0.55979 1 16251 16251 15.847 3.3156 1 2218600 7354 4751 4543 4547 7645 7645 -0.04741560345109974 DPDNHNAWI 9 Unmodified _DPDNHNAWI_ 0 0 0 ENST00000301454.8_1_19:6441086-6441584:-|nuORF ENST00000301454.8_1_19:6441086-6441584:-|nuORF ENST00000301454.8_1_19:6441086-6441584:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2803344726562 2 541.238513 1080.46247 0.13771 7.4535E-05 -0.13972 -7.5619E-05 -0.0020036 -1.0844E-06 541.2384040613588 25.333 0.45319 23.798 23.504 23.958 -1.5342 21 12 2 0 0 0 0.85111 1 4180 4180 3.5965 2.1146 1 825540 7355 8559 4544 4548 7646 7646 -0.07454065635715779 DPDNHNAWI 9 Unmodified _DPDNHNAWI_ 0 0 0 ENST00000301454.8_1_19:6441086-6441584:-|nuORF ENST00000301454.8_1_19:6441086-6441584:-|nuORF ENST00000301454.8_1_19:6441086-6441584:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.238513 1080.46247 0.32926 0.00017821 -0.32115 -0.00017382 0.0081055 4.387E-06 541.2381551802724 23.718 0.66436 23.718 23.199 23.863 0 -0.022074 0.00010079 NaN 3.5965 21 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1044300 7356 8559 4544 4548 -0.07454065635715779 DPDSKPFRY 9 Unmodified _DPDSKPFRY_ 0 0 0 ENST00000506047.1_1_4:77936059-77941836:+|nuORF ENST00000506047.1_1_4:77936059-77941836:+|nuORF ENST00000506047.1_1_4:77936059-77941836:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.0753479003906 3 375.517218 1123.52982 -0.10459 -3.9274E-05 -0.13279 -4.9867E-05 -0.23738 -8.9141E-05 375.5170556877554 27.174 0.37846 27.174 26.939 27.318 0 19 10 3 0 0 0 0.87258 1 4814 4814 4.897 4.0326 1 802800 7357 10677 4545 4549 7647 7647 -0.027000354247547875 DPDSLRIY 8 Unmodified _DPDSLRIY_ 0 0 0 ENSG00000057468|ENST00000263187|MSH4 ENSG00000057468|ENST00000263187|MSH4 ENSG00000057468|ENST00000263187|MSH4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2764892578125 2 489.748182 977.481811 -0.37206 -0.00018222 0.5243 0.00025678 0.15224 7.4559E-05 489.7484994698346 108.1 0.62741 103.78 103.24 103.87 -4.32 24 17 2 0 0 0 0.97966 1 21273 21273 7.2892 0 1 1123500 7358 1285 4546 4550 7648 7648 -0.007831093448089632 DPDSLRIY 8 Unmodified _DPDSLRIY_ 0 0 0 ENSG00000057468|ENST00000263187|MSH4 ENSG00000057468|ENST00000263187|MSH4 ENSG00000057468|ENST00000263187|MSH4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27618408203125 2 489.748182 977.481811 0.44331 0.00021711 -0.031478 -1.5416E-05 0.41183 0.00020169 489.74802975673526 107.96 0.52446 103.83 103.46 103.98 -4.135 19 14 2 0 0 0 0.96284 1 20779 20779 4.756 2.1785 1 935600 7359 1285 4546 4550 7649 7649 -0.007831093448089632 DPDTGAPDQ 9 Unmodified _DPDTGAPDQ_ 0 0 0 REV__ENSG00000188897|ENST00000696174|unknown REV__ENSG00000188897|ENST00000696174|unknown MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2384338378906 2 458.188154 914.361755 NaN NaN NaN NaN NaN NaN NaN 73.156 1 69.497 68.997 69.997 -3.6593 0 0 0 0.22962 1 13823 13823 14.838 2.3067 1 + 7360 19178 4547 4551 7650 7650 -0.09885142409234504 DPEEAEELD 9 Unmodified _DPEEAEELD_ 0 0 0 REV__ENSG00000185624|ENST00000331483|P4HB REV__ENSG00000185624|ENST00000331483|P4HB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.67626953125 2 523.711659 1045.40876 NaN NaN NaN NaN NaN NaN NaN 116.25 1 111.76 111.26 112.26 -4.486 0 0 0 0.22621 1 22921 22921 15.847 1.2655 1 + 7361 18980 4548 4552 7651 7651 -0.11212327648740938 DPEEETMDL 9 Unmodified _DPEEETMDL_ 0 0 0 REV__ENSG00000106948|ENST00000374088|AKNA REV__ENSG00000106948|ENST00000374088|AKNA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20166015625 3 360.14635 1077.41722 -0.018891 -6.8035E-06 0.18058 6.5034E-05 0.16168 5.823E-05 360.14633836732435 112.36 0.5215 107.83 107.55 108.07 -4.5259 18 12 2 0 0 0 0.8799 1 21597 21597 0.20686 0 1 1396000 + 7362 15070 4549 4553 7652 7652 -0.11839097003780807 DPEFVQWKK 9 Unmodified _DPEFVQWKK_ 0 0 0 ENSG00000100077|ENST00000324198|GRK3 ENSG00000100077|ENST00000324198|GRK3 ENSG00000100077|ENST00000324198|GRK3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 393.29071044921875 3 392.873113 1175.59751 0.33387 0.00013117 0.23734 9.3243E-05 0.5712 0.00022441 392.8731984323083 30.109 0.62746 28.216 27.719 28.346 -1.8928 26 17 2 0 0 0 0.88054 1 5046 5046 0.86438 0.16671 1 448810 7363 1925 4550 4554 7653 7653 0.016734145060127048 DPEFVQWKK 9 Unmodified _DPEFVQWKK_ 0 0 0 ENSG00000100077|ENST00000324198|GRK3 ENSG00000100077|ENST00000324198|GRK3 ENSG00000100077|ENST00000324198|GRK3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 392.873113 1175.59751 -0.053921 -2.1184E-05 0.76073 0.00029887 0.70681 0.00027769 392.8733531734132 29.967 0.98104 27.893 27.624 28.605 -2.0743 -0.16139 0.00028541 NaN 0.86438 29 27 2 NaN NaN NaN NaN 0 NaN NaN 0 698840 7364 1925 4550 4554 0.016734145060127048 DPEHAHPED 9 Unmodified _DPEHAHPED_ 0 0 0 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6842041015625 2 523.712328 1045.4101 NaN NaN NaN NaN NaN NaN NaN 156.83 1 152.04 151.54 152.54 -4.7885 0 0 0 0.18525 1 31188 31188 0.12781 0.063827 1 7365 3484 4551 4555 7654 7654 -0.1107864876930762 DPEHAHPED 9 Unmodified _DPEHAHPED_ 0 0 0 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6842041015625 2 523.712328 1045.4101 NaN NaN NaN NaN NaN NaN NaN 156.84 1 152.05 151.55 152.55 -4.7885 0 0 0 0.23508 1 31190 31190 11.64 0 1 7366 3484 4551 4555 7655 7655 -0.1107864876930762 DPEKLNVF 8 Unmodified _DPEKLNVF_ 0 0 0 ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4;ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant;ERBB4|p.H801Mfs*27|1|0.39|ENSG00000178568|chr2:211561989-211561989|G/-|frameshift_variant;ENST00000484594.5_1_2:212426591-213403254:-|nuORF;ERBB3|p.A805Hfs*95|1|0.33|ENSG00000065361|chr12:56097178-56097178|G/-|frameshift_variant;ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3 ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2528991699219 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 45.412 1 45.412 44.912 45.912 0 0 0 0 0.19954 1 8536 8536 24.674 0 1 7367 11780 4552 4556 7656 7656 0.009820786605587273 DPELPTHVLG 10 Unmodified _DPELPTHVLG_ 0 0 0 REV__TBX5|p.A11V|1|0.16|ENSG00000089225|chr12:114403867-114403867|G/A|missense_variant REV__TBX5|p.A11V|1|0.16|ENSG00000089225|chr12:114403867-114403867|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2130126953125 3 359.857351 1076.55022 -1.9149 -0.00068908 -0.64741 -0.00023298 -2.5623 -0.00092206 359.85709408377835 17.985 0.35117 16.47 16.327 16.678 -1.5148 17 9 3 0 0 0 0.91149 1 2681 2681 0 0 1 752080 + 7368 24777 4553 4557 7657 7657 0.015011352350256857 DPEQKRSRA 9 Unmodified _DPEQKRSRA_ 0 0 0 ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7870483398438 2 543.786161 1085.55777 NaN NaN NaN NaN NaN NaN NaN 138.38 1 138.38 137.88 138.88 0 0 0 0 0.19687 1 27470 27470 2.6312 2.223 1 7369 3777 4554 4558 7658 7658 0.018412875553167396 DPERKIKKK 9 Unmodified _DPERKIKKK_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B;nc|ENSG00000116117|Q8TEW8-5|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21807861328125 3 381.239907 1140.69789 -0.14842 -5.6583E-05 -0.29274 -0.0001116 -0.44115 -0.00016819 381.23989502214357 20.682 1.0118 20.682 20.351 21.362 0 44 28 3 0 0 0 0.88413 1 3531 3531 1.0715 0.83562 1 2605500 7370 2907 4555 4559 7659 7659 0.13317071559686156 DPESERALQ 9 Unmodified _DPESERALQ_ 0 0 0 nc|ENSG00000163346|Q96AQ6-3|PBXIP1;nc|ENSG00000163346|Q96AQ6-2|PBXIP1;ENSG00000163346|ENST00000368463|PBXIP1 nc|ENSG00000163346|Q96AQ6-3|PBXIP1 nc|ENSG00000163346|Q96AQ6-3|PBXIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2645874023438 2 522.751453 1043.48835 0.23031 0.0001204 -0.43486 -0.00022732 -0.20455 -0.00010693 522.7511880998537 29.663 0.48535 29.663 29.398 29.884 0 20 13 2 0 0 0 0.81703 1 5266 5266 6.2058 0.47393 1 2454900 7371 5417 4556 4560 7660 7660 -0.03165216184106612 DPESERALQ 9 Unmodified _DPESERALQ_ 0 0 0 nc|ENSG00000163346|Q96AQ6-3|PBXIP1;nc|ENSG00000163346|Q96AQ6-2|PBXIP1;ENSG00000163346|ENST00000368463|PBXIP1 nc|ENSG00000163346|Q96AQ6-3|PBXIP1 nc|ENSG00000163346|Q96AQ6-3|PBXIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2608642578125 2 522.751453 1043.48835 -0.37256 -0.00019476 0.25608 0.00013387 -0.11648 -6.089E-05 522.7516157487239 31.586 0.35781 29.559 29.372 29.73 -2.0264 16 9 2 0 0 0 0.76271 1 5440 5440 20.454 1.1966 1 1602200 7372 5417 4556 4560 7661 7661 -0.03165216184106612 DPESERALQ 9 Unmodified _DPESERALQ_ 0 0 0 nc|ENSG00000163346|Q96AQ6-3|PBXIP1;nc|ENSG00000163346|Q96AQ6-2|PBXIP1;ENSG00000163346|ENST00000368463|PBXIP1 nc|ENSG00000163346|Q96AQ6-3|PBXIP1 nc|ENSG00000163346|Q96AQ6-3|PBXIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.751453 1043.48835 0.060503 3.1628E-05 -0.16929 -8.8494E-05 -0.10878 -5.6866E-05 522.7513775015256 31.754 0.35608 29.524 29.301 29.657 -2.2305 -0.057644 7.0591E-05 NaN 20.454 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1757700 7373 5417 4556 4560 -0.03165216184106612 DPESQPLLG 9 Unmodified _DPESQPLLG_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7412109375 2 478.24019 954.465826 0.40327 0.00019286 -0.47713 -0.00022818 -0.073851 -3.5319E-05 478.2398800245033 33.723 0.52482 31.507 31.216 31.74 -2.2158 23 14 2 0 0 0 0.63326 1 5847 5847 10.824 0.75 1 885850 7374 2311 4557 4561 7662 7662 -0.013228155816932485 DPESQPLLG 9 Unmodified _DPESQPLLG_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.24019 954.465826 -0.029096 -1.3915E-05 -0.048285 -2.3092E-05 -0.077381 -3.7007E-05 478.2401200365314 33.692 0.48225 31.375 31.148 31.63 -2.3175 -0.052867 0.000277 NaN 10.824 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1655900 7375 2311 4557 4561 -0.013228155816932485 DPFKDIILY 9 Unmodified _DPFKDIILY_ 0 0 0 BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2063903808594 3 375.20598 1122.59611 NaN NaN NaN NaN NaN NaN NaN 19.988 1 18.663 18.163 19.163 -1.3251 0 0 0 0.23508 1 3080 3080 2.7352 0.89096 1 7376 347 4558 4562 7663 7663 0.03971780417282389 DPFQLPTLY 9 Unmodified _DPFQLPTLY_ 0 0 0 REV__tr|U7T539|U7T539_FUSNUTetratricopeptiderepeatfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00425PE=4SV=1 REV__tr|U7T539|U7T539_FUSNUTetratricopeptiderepeatfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00425PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.766845703125 2 547.281857 1092.54916 -0.162 -8.8658E-05 0.73984 0.0004049 0.57784 0.00031624 547.7843683376307 109.57 0.6641 105.12 104.68 105.34 -4.4518 36 18 3 0 0 0 0.48707 1 21014 21014 20.415 2.2682 1 799920 + 7377 25405 4559 4563 7664 7664 0.006589208661580415 DPFYEDFL 8 Unmodified _DPFYEDFL_ 0 0 0 ENSG00000187550|ENST00000413299|SBK2 ENSG00000187550|ENST00000413299|SBK2 ENSG00000187550|ENST00000413299|SBK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6998901367188 2 523.22929 1044.44403 NaN NaN NaN NaN NaN NaN NaN 64.826 1 61.368 60.868 61.868 -3.4581 0 0 0 0.21486 1 12123 12123 9.3474 0.75416 1 7378 7113 4560 4564 7665 7665 -0.07641620330286969 DPGAGVCH 8 Unmodified _DPGAGVCH_ 0 0 0 ENST00000582168.5_1_17:72769713-72772433:-|nuORF;ENST00000582993.5_1_17:72769713-72772472:-|nuORF ENST00000582168.5_1_17:72769713-72772433:-|nuORF ENST00000582168.5_1_17:72769713-72772433:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.1545104980469 2 378.160688 754.306823 NaN NaN NaN NaN NaN NaN NaN 78.85 1 78.85 78.35 79.35 0 0 0 0 0.23366 1 15347 15347 0.0082765 0 1 7379 11510 4561 4565 7666 7666 -0.08015807690844667 DPGRQQGQDDE 11 Unmodified _DPGRQQGQDDE_ 0 0 0 nc|ENSG00000181827|Q2KHR2-1|RFX7;ENSG00000181827|ENST00000559447|RFX7 nc|ENSG00000181827|Q2KHR2-1|RFX7 nc|ENSG00000181827|Q2KHR2-1|RFX7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7603759765625 2 622.760537 1243.50652 NaN NaN NaN NaN NaN NaN NaN 50.757 1 47.705 47.205 48.205 -3.0517 0 0 0 0.23379 1 9335 9335 5.2969 0 1 7380 6748 4562 4566 7667 7667 -0.10549126000023534 DPGVGRPSPGF 11 Unmodified _DPGVGRPSPGF_ 0 0 0 ENST00000460087.1_1_22:50755275-50757393:-|nuORF ENST00000460087.1_1_22:50755275-50757393:-|nuORF ENST00000460087.1_1_22:50755275-50757393:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7720947265625 2 543.272355 1084.53016 -0.038882 -2.1123E-05 0.33407 0.00018149 0.29519 0.00016037 543.2728850674899 35.135 0.17505 32.741 32.67 32.845 -2.3938 6 4 2 0 0 0 0.46434 1 6473 6473 24.991 4.5764 1 305370 7381 10052 4563 4567 7668 7668 -0.008726157049068206 DPGYFLSY 8 Unmodified _DPGYFLSY_ 0 0 0 ENST00000447416.5_3_22:25003962-25007052:+|nuORF;ENST00000455483.5_2_22:24999236-25007052:+|nuORF ENST00000447416.5_3_22:25003962-25007052:+|nuORF ENST00000447416.5_3_22:25003962-25007052:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2342529296875 2 481.218726 960.422899 NaN NaN NaN NaN NaN NaN NaN 82.946 1 82.946 82.446 83.446 0 0 0 0 0.21323 1 16169 16169 14.582 1.0738 1 7382 9949 4564 4568 7669 7669 -0.0588958563913593 DPGYRFDPR 9 Unmodified _DPGYRFDPR_ 0 0 0 nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS nc|ENSG00000135677|P15586-2|GNS nc|ENSG00000135677|P15586-2|GNS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 374.8460693359375 3 374.849079 1121.52541 NaN NaN NaN NaN NaN NaN NaN 19.709 1 18.384 17.884 18.884 -1.3251 0 0 0 0.23508 1 3021 3021 4.5289 2.0304 1 7383 3943 4565 4569 7670 7670 -0.030494998476797264 DPHDFNYQ 8 Unmodified _DPHDFNYQ_ 0 0 0 REV__ENST00000459858.1_1_9:134404461-134406630:-|nuORF;REV__nc|ENSG00000130717|Q9HA47-2|UCK1 REV__ENST00000459858.1_1_9:134404461-134406630:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 517.7161254882812 2 518.211963 1034.40937 -0.56823 -0.00029446 1.1984 0.00062101 0.63013 0.00032654 518.7136645206016 138.7 0.18047 133.75 133.67 133.85 -4.952 5 4 2 0 0 0 0.89276 1 26675 26675 0.0082765 0 1 2160300 + 7384 21869;24036 4566 4570 7671 7671 -0.10645443418388822 DPHPFYGP 8 Unmodified _DPHPFYGP_ 0 0 0 REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2520446777344 2 465.211235 928.407917 NaN NaN NaN NaN NaN NaN NaN 68.026 1 68.026 67.526 68.526 0 0 0 0 0.23366 1 13151 13151 0.12286 0 1 + 7385 15062 4567 4571 7672 7672 -0.059150327164843475 DPHSLHPA 8 Unmodified _DPHSLHPA_ 0 0 0 ENST00000532206.1_1_16:50731151-50744498:+|nuORF;nc|ENSG00000167207|Q9HC29-3|NOD2;ENST00000526417.6_1_16:50727539-50743880:+|nuORF;NOD2|p.S506Pfs*11|2|0.28|ENSG00000167207|chr16:50711420-50711420|G/-|frameshift_variant;NOD2|p.S506Vfs*73|1|0.24|ENSG00000167207|chr16:50711419-50711420|-/G|frameshift_variant;NOD2|p.P528Qfs*235|4|0.37|ENSG00000167207|chr16:50711488-50711488|C/-|frameshift_variant;ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2 ENST00000532206.1_1_16:50731151-50744498:+|nuORF ENST00000532206.1_1_16:50731151-50744498:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2355041503906 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 83.637 1 83.637 83.137 84.137 0 0 0 0 0.21452 1 16307 16307 13.508 2.684 1 7386 5794 4568 4572 7673 7673 -0.02724514484964402 DPHSPHLA 8 Unmodified _DPHSPHLA_ 0 0 0 REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2280578613281 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 88.75 1 84.754 84.254 85.254 -3.9953 0 0 0 0.23366 1 16909 16909 0.12286 0 1 + 7387 17127 4569 4573 7674 7674 -0.02724514484964402 DPHSPHLA 8 Unmodified _DPHSPHLA_ 0 0 0 REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2278137207031 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 102.1 1 97.782 97.282 98.282 -4.3208 0 0 0 0.21486 1 19547 19547 10.183 0 1 + 7388 17127 4569 4573 7675 7675 -0.02724514484964402 DPHWERALKKY 11 Unmodified _DPHWERALKKY_ 0 0 0 REV__DNAJC16|p.G599Afs*5|2|0.35|ENSG00000116138|chr1:15567109-15567109|A/-|frameshift_variant REV__DNAJC16|p.G599Afs*5|2|0.35|ENSG00000116138|chr1:15567109-15567109|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2459411621094 3 481.589487 1441.74663 -0.43801 -0.00021094 0.71179 0.00034279 0.27378 0.00013185 481.92408747482307 23.836 0.27402 22.048 21.876 22.15 -1.7886 11 7 2 0 0 0 0.96157 1 3867 3867 0.073264 0 1 386610 + 7389 13723 4570 4574 7676 7676 0.04342940128776718 DPIGPVNSY 9 Unmodified _DPIGPVNSY_ 0 0 0 REV__ENST00000538266.5_1_11:62621288-62622635:-|nuORF REV__ENST00000538266.5_1_11:62621288-62622635:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2359619140625 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 163.82 1 158.76 158.26 159.26 -5.0648 0 0 0 0.19451 1 31902 31902 0.40827 0 1 + 7390 22838 4571 4575 7677 7677 -0.02654798236142142 DPILYYFM 8 Unmodified _DPILYYFM_ 0 0 0 P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant;ENSG00000078589|ENST00000171757|P2RY10 P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 354.8402404785156 3 354.505262 1060.49396 -0.33351 -0.00011823 0.3129 0.00011092 -0.020614 -7.3077E-06 354.50532425029377 18.083 0.59866 18.083 17.803 18.402 0 35 16 3 0 0 0 0.86089 1 2858 2858 1.6526 0 1 1315500 7391 1580 4572 4576 7678 7678 -0.03387208925983032 DPILYYFM 8 Unmodified _DPILYYFM_ 0 0 0 P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant;ENSG00000078589|ENST00000171757|P2RY10 P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 354.505262 1060.49396 -0.33351 -0.00011823 0.3129 0.00011092 -0.020614 -7.3077E-06 354.50532425029377 18.083 0.59866 18.083 17.803 18.402 0 0.067224 -3.9678E-05 NaN 1.6526 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1315500 7392 1580 4572 4576 -0.03387208925983032 DPILYYFM 8 Unmodified _DPILYYFM_ 0 0 0 P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant;ENSG00000078589|ENST00000171757|P2RY10 P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 354.505262 1060.49396 -0.15189 -5.3846E-05 0.223 7.9053E-05 0.071107 2.5208E-05 354.5052941633843 19.386 0.67138 17.989 17.741 18.412 -1.3966 -0.026606 -0.00013529 NaN 1.6526 39 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1329800 7393 1580 4572 4576 -0.03387208925983032 DPILYYFM 8 Unmodified _DPILYYFM_ 0 0 0 P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant;ENSG00000078589|ENST00000171757|P2RY10 P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 354.505262 1060.49396 -0.31582 -0.00011196 0.50788 0.00018004 0.19206 6.8085E-05 354.50534398821884 19.3 0.59407 17.975 17.685 18.279 -1.3251 -0.040618 0.00016768 NaN 1.6526 32 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1470200 7394 1580 4572 4576 -0.03387208925983032 DPKIDKKII 9 Unmodified _DPKIDKKII_ 0 0 0 CARF|p.V469Efs*5|1|0.06|ENSG00000138380|chr2:202974377-202974378|-/AAAGACATAATTTATCTTTTTTTCCAACTGAAAA|frameshift_variant;nc|ENSG00000138380|Q8N187-3|CARF;ENSG00000138380|ENST00000438828|CARF CARF|p.V469Efs*5|1|0.06|ENSG00000138380|chr2:202974377-202974378|-/AAAGACATAATTTATCTTTTTTTCCAACTGAAAA|frameshift_variant CARF|p.V469Efs*5|1|0.06|ENSG00000138380|chr2:202974377-202974378|-/AAAGACATAATTTATCTTTTTTTCCAACTGAAAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5605773925781 3 357.225375 1068.6543 -0.24614 -8.7928E-05 4.3541 0.0015554 4.108 0.0014675 357.5599808605026 22.678 0.14055 22.678 22.609 22.749 0 5 3 2 0 0 0 0.78802 1 3853 3853 2.2828 0 1 217630 7395 391 4573 4577 7679 7679 0.12271462062562932 DPKKYEKS 8 Unmodified _DPKKYEKS_ 0 0 0 REV__tr|U7SHY1|U7SHY1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02195PE=4SV=1 REV__tr|U7SHY1|U7SHY1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02195PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.005615234375 3 332.178313 993.513111 0.14309 4.7533E-05 -0.34667 -0.00011515 -0.20357 -6.7622E-05 332.17819628337963 30.699 0.88074 28.583 28.189 29.07 -2.1167 53 24 3 0 0 0 1.0277 1 5552 5552 1.6526 1.6526 1 908120 + 7396 24888 4574 4578 7680 7680 0.01609463689283075 DPKPIPGNW 9 Unmodified _DPKPIPGNW_ 0 0 0 ENSG00000135821|ENST00000331872|GLUL;ENST00000491322.1_1_1:182354490-182354655:-|nuORF;ENST00000324731.7_1_9:34917810-34918290:+|nuORF ENSG00000135821|ENST00000331872|GLUL;ENST00000324731.7_1_9:34917810-34918290:+|nuORF ENST00000324731.7_1_9:34917810-34918290:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.22027587890625 3 341.846787 1022.51853 -0.22801 -7.7946E-05 -0.03293 -1.1257E-05 -0.26094 -8.9203E-05 341.84670487589875 61.918 0.4201 58.956 58.725 59.145 -2.9614 16 11 2 0 0 0 0.8825 1 11968 11968 2.7352 0 1 894940 7397 3954;8730 4575 4579 7681 7681 0.00817187271752573 DPKPSAPQTC 10 Unmodified _DPKPSAPQTC_ 0 0 0 ENST00000474135.1_1_7:150747249-150747845:+|nuORF ENST00000474135.1_1_7:150747249-150747845:+|nuORF ENST00000474135.1_1_7:150747249-150747845:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.270263671875 2 522.244949 1042.47534 NaN NaN NaN NaN NaN NaN NaN 26.472 1 26.472 25.972 26.972 0 0 0 0 0.22518 1 4635 4635 22.736 1.1993 1 7398 10253 4576 4580 7682 7682 -0.044193705678253536 DPLELIFY 8 Unmodified _DPLELIFY_ 0 0 0 REV__ENST00000592404.5_1_19:28288763-28290260:+|nuORF REV__ENST00000592404.5_1_19:28288763-28290260:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.18853759765625 3 337.179543 1008.5168 -0.39417 -0.0001329 -3.0078 -0.0010142 -3.402 -0.0011471 337.1786363612572 21.875 0.38217 21.875 21.635 22.017 0 15 10 3 0 0 0 8448 1 3686 3686 1.7423 1.0609 1 370770 + 7399 23351 4577 4581 7683 7683 0.012881334631515529 DPLNWFGI 8 Unmodified _DPLNWFGI_ 0 0 0 ENSG00000136710|ENST00000259229|CCDC115;nc|ENSG00000136710|Q96NT0-2|CCDC115 ENSG00000136710|ENST00000259229|CCDC115 ENSG00000136710|ENST00000259229|CCDC115 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2432556152344 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 106.92 1 102.78 102.28 103.28 -4.135 0 0 0 0.22676 1 20558 20558 1.7423 0 1 7400 4031 4578 4582 7684 7684 -0.011298866482775338 DPLNWFGI 8 Unmodified _DPLNWFGI_ 0 0 0 ENSG00000136710|ENST00000259229|CCDC115;nc|ENSG00000136710|Q96NT0-2|CCDC115 ENSG00000136710|ENST00000259229|CCDC115 ENSG00000136710|ENST00000259229|CCDC115 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2451171875 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 107.22 1 103.08 102.58 103.58 -4.135 0 0 0 0.22684 1 20621 20621 3.5871 1.8448 1 7401 4031 4578 4582 7685 7685 -0.011298866482775338 DPLPTNFEED 10 Unmodified _DPLPTNFEED_ 0 0 0 MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant;ENSG00000146263|ENST00000683635|MMS22L;ENST00000508820.1_1_6:97720576-97730353:-|nuORF;MMS22L|p.K389Sfs*10|1|0.09|ENSG00000146263|chr6:97246644-97246644|T/-|frameshift_variant;ENST00000508976.5_1_6:97702357-97730353:-|nuORF MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.29034423828125 3 392.840026 1175.49825 -0.18207 -7.1524E-05 1.3424 0.00052735 1.1603 0.00045583 392.8410105655292 14.473 2.2648 14.473 14.279 16.543 0 187 64 8 0 0 0 0.91149 1 2125 2125 0.13989 0 1 690180000 7402 4648 4579 4583 7686 7686 -0.08248072969377063 DPLPTNFEED 10 Unmodified _DPLPTNFEED_ 0 0 0 MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant;ENSG00000146263|ENST00000683635|MMS22L;ENST00000508820.1_1_6:97720576-97730353:-|nuORF;MMS22L|p.K389Sfs*10|1|0.09|ENSG00000146263|chr6:97246644-97246644|T/-|frameshift_variant;ENST00000508976.5_1_6:97702357-97730353:-|nuORF MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 392.840026 1175.49825 -0.77201 -0.00030328 1.949 0.00076566 1.177 0.00046238 392.8412925209066 15.438 2.3382 14.324 14.131 16.47 -1.1142 0.033814 -0.00010552 NaN 0.13989 163 66 6 NaN NaN NaN NaN 0 NaN NaN 0 696430000 7403 4648 4579 4583 -0.08248072969377063 DPLPTNFEED 10 Unmodified _DPLPTNFEED_ 0 0 0 MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant;ENSG00000146263|ENST00000683635|MMS22L;ENST00000508820.1_1_6:97720576-97730353:-|nuORF;MMS22L|p.K389Sfs*10|1|0.09|ENSG00000146263|chr6:97246644-97246644|T/-|frameshift_variant;ENST00000508976.5_1_6:97702357-97730353:-|nuORF MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 392.840026 1175.49825 -0.57844 -0.00022723 1.7793 0.00069896 1.2008 0.00047173 392.8411887643791 15.471 2.6455 14.25 14.101 16.746 -1.2219 -0.040218 -0.00030559 NaN 0.13989 201 76 7 NaN NaN NaN NaN 0 NaN NaN 0 586300000 7404 4648 4579 4583 -0.08248072969377063 DPLPTNFEED 10 Unmodified _DPLPTNFEED_ 0 0 0 MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant;ENSG00000146263|ENST00000683635|MMS22L;ENST00000508820.1_1_6:97720576-97730353:-|nuORF;MMS22L|p.K389Sfs*10|1|0.09|ENSG00000146263|chr6:97246644-97246644|T/-|frameshift_variant;ENST00000508976.5_1_6:97702357-97730353:-|nuORF MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 392.840026 1175.49825 -2.195 -0.00086228 3.3156 0.0013025 1.1207 0.00044024 392.84186264403314 15.467 3.0503 14.113 13.957 17.008 -1.3534 -0.17649 0.0015051 NaN 0.13989 227 87 6 NaN NaN NaN NaN 0 NaN NaN 0 478580000 7405 4648 4579 4583 -0.08248072969377063 DPLQPGKLC 9 Unmodified _DPLQPGKLC_ 0 0 0 REV__HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant REV__HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1806945800781 3 324.172394 969.495352 0.1344 4.357E-05 -0.94464 -0.00030623 -0.81024 -0.00026266 324.1719168690071 62.286 0.70599 58.916 58.568 59.274 -3.3694 43 19 3 0 0 0 0.87918 1 11590 11590 0.23584 0 1 2483400 + 7406 14895 4580 4584 7687 7687 0.009384251627807316 DPLSALKY 8 Unmodified _DPLSALKY_ 0 0 0 ENST00000496815.1_1_7:131155619-131156414:+|nuORF;ENST00000498778.5_1_7:131151082-131172419:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1 ENST00000496815.1_1_7:131155619-131156414:+|nuORF ENST00000496815.1_1_7:131155619-131156414:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74969482421875 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 145.32 1 140.37 139.87 140.87 -4.9445 0 0 0 0.10566 1 28093 28093 43.858 13.222 1 7407 3530 4581 4585 7688 7688 0.029309801489034726 DPLSGVKSA 9 Unmodified _DPLSGVKSA_ 0 0 0 REV__ENST00000518618.2_1_20:61916981-61917215:+|nuORF REV__ENST00000518618.2_1_20:61916981-61917215:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2252197265625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 23.819 1 23.819 23.319 24.319 0 0 0 0 0.19636 1 4079 4079 2.4985 2.3756 1 + 7408 22607 4582 4586 7689 7689 0.019015056264720442 DPLSSDPLFC 10 Unmodified _DPLSSDPLFC_ 0 0 0 REV__ENSG00000167654|ENST00000450849|ATCAY REV__ENSG00000167654|ENST00000450849|ATCAY MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.772705078125 2 547.247157 1092.47976 0.54802 0.0002999 -3.4348 -0.0018797 -2.8868 -0.0015798 547.7472015125682 82.701 0.16573 82.701 82.568 82.734 0 9 4 3 0 0 0 0.87854 1 16095 16095 5.7319 1.7875 1 1415300 + 7409 17951 4583 4587 7690 7690 -0.0627790614494188 DPNDIQDSYH 10 Unmodified _DPNDIQDSYH_ 0 0 0 REV__ENST00000476788.5_1_1:17303371-17307094:-|nuORF REV__ENST00000476788.5_1_1:17303371-17307094:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3016357421875 2 602.249274 1202.484 1.9849 0.0011954 -1.3336 -0.00080314 0.65135 0.00039227 602.2485490492586 24.325 0.27909 22.677 22.543 22.822 -1.6482 11 7 2 0 0 0 0.871 1 4248 4248 10.074 7.3387 1 458150 + 7410 15514 4584 4588 7691 7691 -0.10914725397651637 DPNERESDR 9 Unmodified _DPNERESDR_ 0 0 0 nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2;nc|ENSG00000169129|Q8N4X5-3|AFAP1L2;ENST00000491814.1_1_10:116056685-116061337:-|nuORF nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.104248046875 3 373.167136 1116.47958 0.066222 2.4712E-05 -1.0366 -0.00038681 -0.97035 -0.0003621 373.1666983384981 43.046 0.45193 43.046 42.771 43.223 0 15 12 2 0 0 0 0.8799 1 8077 8077 2.4985 0.75621 1 514030 7411 5965 4585 4589 7692 7692 -0.07400189820577907 DPNIKKLE 8 Unmodified _DPNIKKLE_ 0 0 0 REV__nc|ENSG00000110675|Q8N336-3|ELMOD1 REV__nc|ENSG00000110675|Q8N336-3|ELMOD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73675537109375 2 478.7742 955.533846 0.15653 7.4945E-05 -0.15892 -7.6084E-05 -0.0023809 -1.1399E-06 478.7741830547474 155.57 0.78217 150.79 150.41 151.19 -4.7791 38 21 3 0 0 0 8448 1 30985 30985 10.074 8.3317 1 2562900 + 7412 15208 4586 4590 7693 7693 0.0543005406894963 DPNNFSVST 9 Unmodified _DPNNFSVST_ 0 0 0 PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant;PLCH2|p.G1073Rfs*20|1|0.35|ENSG00000149527|chr1:2504173-2504174|-/C|frameshift_variant;ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2 PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2581481933594 2 490.719621 979.42469 0.059413 2.9155E-05 0.43283 0.0002124 0.49225 0.00024155 490.7197516213462 45.156 0.94786 42.29 41.986 42.934 -2.8653 42 26 2 0 0 0 0.086188 1 8223 8223 65.235 0 1 1708800 7413 4796 4587 4591 7694 7694 -0.0658457662117371 DPNPAALIA 9 Unmodified _DPNPAALIA_ 0 0 0 REV__STX1B|p.Q72Tfs*29|1|0.41|ENSG00000099365|chr16:31000994-31000995|-/T|frameshift_variant REV__STX1B|p.Q72Tfs*29|1|0.41|ENSG00000099365|chr16:31000994-31000995|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 441.741455078125 2 441.239993 880.465432 0.097903 4.3199E-05 -0.069786 -3.0792E-05 0.028117 1.2406E-05 441.23987105950204 104.79 0.75301 100.44 100.04 100.8 -4.346 53 21 3 0 0 0 0.35556 1 20148 20148 13.535 1.5358 1 5401300 + 7414 14636 4588 4592 7695 7695 0.020418094890828797 DPNPAALIA 9 Unmodified _DPNPAALIA_ 0 0 0 REV__STX1B|p.Q72Tfs*29|1|0.41|ENSG00000099365|chr16:31000994-31000995|-/T|frameshift_variant REV__STX1B|p.Q72Tfs*29|1|0.41|ENSG00000099365|chr16:31000994-31000995|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 441.239993 880.465432 0.54873 0.00024212 -0.36747 -0.00016214 0.18126 7.998E-05 441.2397141230289 100.64 1.1495 100.64 99.792 100.94 0 0.16983 -0.00016912 NaN 13.535 57 32 3 NaN NaN NaN NaN 0 NaN NaN 0 3495100 + 7415 14636 4588 4592 0.020418094890828797 DPNPAALIA 9 Unmodified _DPNPAALIA_ 0 0 0 REV__STX1B|p.Q72Tfs*29|1|0.41|ENSG00000099365|chr16:31000994-31000995|-/T|frameshift_variant REV__STX1B|p.Q72Tfs*29|1|0.41|ENSG00000099365|chr16:31000994-31000995|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 441.239993 880.465432 -0.32925 -0.00014528 0.38238 0.00016872 0.053133 2.3444E-05 441.2400812177304 104.57 0.72345 100.35 99.96 100.68 -4.2183 -0.12256 0.00049261 NaN 13.535 49 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5625800 + 7416 14636 4588 4592 0.020418094890828797 DPNPAALIA 9 Unmodified _DPNPAALIA_ 0 0 0 REV__STX1B|p.Q72Tfs*29|1|0.41|ENSG00000099365|chr16:31000994-31000995|-/T|frameshift_variant REV__STX1B|p.Q72Tfs*29|1|0.41|ENSG00000099365|chr16:31000994-31000995|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 441.239993 880.465432 0.59531 0.00026267 -0.62817 -0.00027717 -0.032864 -1.4501E-05 441.23965267890514 104.51 0.77826 100.46 100.09 100.87 -4.0543 -0.014872 -0.00039918 NaN 13.535 54 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5264300 + 7417 14636 4588 4592 0.020418094890828797 DPNPPGTAPD 10 Unmodified _DPNPPGTAPD_ 0 0 0 ENST00000514049.5_1_15:67636411-67663825:+|nuORF ENST00000514049.5_1_15:67636411-67663825:+|nuORF ENST00000514049.5_1_15:67636411-67663825:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2529602050781 2 490.719621 979.42469 0.10058 4.9356E-05 0.19395 9.5174E-05 0.29453 0.00014453 490.7197099270329 45.109 0.78295 42.319 42.059 42.842 -2.79 36 21 2 0 0 0 0.84281 1 8546 8546 19.257 2.3147 1 2135800 7418 10769 4589 4593 7696 7696 -0.06584576621185079 DPNPPGTAPD 10 Unmodified _DPNPPGTAPD_ 0 0 0 ENST00000514049.5_1_15:67636411-67663825:+|nuORF ENST00000514049.5_1_15:67636411-67663825:+|nuORF ENST00000514049.5_1_15:67636411-67663825:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2762451171875 2 490.719621 979.42469 -0.34434 -0.00016898 0.63199 0.00031013 0.28765 0.00014115 490.7198687878198 45.273 0.84285 42.407 42.12 42.963 -2.8666 33 23 2 0 0 0 0.57141 1 8179 8179 31.268 8.5321 1 1072100 7419 10769 4589 4593 7697 7697 -0.06584576621185079 DPNVARREQPE 11 Unmodified _DPNVARREQPE_ 0 0 0 nc|ENSG00000181322|Q86XW9-3|NME9;nc|ENSG00000181322|Q86XW9-2|NME9;ENSG00000181322|ENST00000333911|NME9 nc|ENSG00000181322|Q86XW9-3|NME9 nc|ENSG00000181322|Q86XW9-3|NME9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.88714599609375 3 437.553102 1309.63748 -0.35567 -0.00015563 0.21009 9.1924E-05 -0.14559 -6.3701E-05 437.5532150223446 25.021 0.86028 23.168 22.913 23.773 -1.8534 69 24 5 0 0 0 0.81736 1 4178 4178 1.3296 0.21989 1 23009000 7420 6720 4590 4594 7698 7698 -0.004956905613653362 DPPAELHLS 9 Unmodified _DPPAELHLS_ 0 0 0 DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant;ENSG00000197587|ENST00000360032|DMBX1;nc|ENSG00000197587|Q8NFW5|DMBX1 DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25531005859375 2 489.748182 977.481811 0.041866 2.0504E-05 0.12855 6.2957E-05 0.17042 8.3461E-05 489.7484320508247 114.26 0.31938 109.79 109.61 109.93 -4.4726 12 8 2 0 0 0 0.54076 1 22485 22485 26.884 7.6267 1 1222200 7421 851 4591 4595 7699 7699 -0.007831093447975945 DPPAHGENCHC 11 Unmodified _DPPAHGENCHC_ 0 0 0 REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2908630371094 3 393.815052 1178.42333 -0.38062 -0.00014989 2.2071 0.00086919 1.8265 0.0007193 394.1503987966919 63.419 0.83741 63.419 63.121 63.959 0 74 23 5 0 0 0 0.96166 1 12148 12148 0.45452 0 1 8348200 + 7422 22928 4592 4596 7700 7700 -0.15874857253220398 DPPAPSSRPSA 11 Unmodified _DPPAPSSRPSA_ 0 0 0 REV__ZSCAN18|p.M88Dfs*16|1|0.16|ENSG00000121413|chr19:58090006-58090007|-/C|frameshift_variant REV__ZSCAN18|p.M88Dfs*16|1|0.16|ENSG00000121413|chr19:58090006-58090007|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2662353515625 2 541.26727 1080.51999 -0.73179 -0.00039609 0.089059 4.8205E-05 -0.64273 -0.00034789 541.2671220267158 20.769 0.6938 19.048 18.659 19.353 -1.7211 30 19 2 0 0 0 0.60781 1 3210 3210 5.4027 0.5057 1 1078600 + 7423 15658 4593 4597 7701 7701 -0.01705223430121805 DPPDEFGP 8 Unmodified _DPPDEFGP_ 0 0 0 GRPEL2|p.L53F|1|0.42|ENSG00000164284|chr5:149348351-149348351|C/T|missense_variant GRPEL2|p.L53F|1|0.42|ENSG00000164284|chr5:149348351-149348351|C/T|missense_variant GRPEL2|p.L53F|1|0.42|ENSG00000164284|chr5:149348351-149348351|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2292785644531 2 437.184883 872.355213 NaN NaN NaN NaN NaN NaN NaN 23.644 1 21.855 21.355 22.355 -1.7886 0 0 0 0.21486 1 3812 3812 5.7604 0.52976 1 7424 11867 4594 4598 7702 7702 -0.08607035569934851 DPPFSYQPH 9 Unmodified _DPPFSYQPH_ 0 0 0 REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7794799804688 2 544.245806 1086.47706 0.62497 0.00034014 -0.11813 -6.429E-05 0.50684 0.00027585 544.2456360020833 104.94 1.0087 104.94 104.38 105.39 0 62 28 3 0 0 0 0.74655 1 20662 20662 15.847 5.0233 1 6627500 + 7425 19640 4595 4599 7703 7703 -0.06271993487553118 DPPFSYQPH 9 Unmodified _DPPFSYQPH_ 0 0 0 REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7733764648438 2 544.245806 1086.47706 -0.18322 -9.9719E-05 0.91723 0.0004992 0.73401 0.00039948 544.246406359399 110.03 0.94741 105.58 105.13 106.07 -4.4518 55 24 3 0 0 0 0.57447 1 21138 21138 14.838 4.6549 1 9148500 + 7426 19640 4595 4599 7704 7704 -0.06271993487553118 DPPFSYQPH 9 Unmodified _DPPFSYQPH_ 0 0 0 REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7713623046875 2 544.245806 1086.47706 0.73244 0.00039863 0.64448 0.00035075 1.3769 0.00074938 544.2464240094652 109.73 1.0181 105.55 105.09 106.1 -4.1826 59 24 3 0 0 0 0.55979 1 21076 21076 15.847 4.2069 1 8686300 + 7427 19640 4595 4599 7705 7705 -0.06271993487553118 DPPFSYQPH 9 Unmodified _DPPFSYQPH_ 0 0 0 REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 544.245806 1086.47706 -0.18322 -9.9719E-05 0.91723 0.0004992 0.73401 0.00039948 544.246406359399 110.03 0.94741 105.58 105.13 106.07 -4.4518 -0.011677 -0.00010734 NaN 15.847 55 24 3 NaN NaN NaN NaN 0 NaN NaN 0 9148500 + 7428 19640 4595 4599 -0.06271993487553118 DPPFSYQPH 9 Unmodified _DPPFSYQPH_ 0 0 0 REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 544.245806 1086.47706 0.73244 0.00039863 0.64448 0.00035075 1.3769 0.00074938 544.2464240094652 109.73 1.0181 105.55 105.09 106.1 -4.1826 -0.043525 -0.00040423 NaN 15.847 59 24 3 NaN NaN NaN NaN 0 NaN NaN 0 8686300 + 7429 19640 4595 4599 -0.06271993487553118 DPPLVIACT 9 Unmodified _DPPLVIACT_ 0 0 0 REV__ENST00000314728.9_1_17:19239740-19240025:+|nuORF REV__ENST00000314728.9_1_17:19239740-19240025:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1641540527344 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 176.06 1 171.27 170.77 171.77 -4.7898 0 0 0 0.19638 1 35999 35999 0.0033805 0 1 + 7430 20511 4596 4600 7706 7706 0.00691620414204408 DPPLVIACT 9 Unmodified _DPPLVIACT_ 0 0 0 REV__ENST00000314728.9_1_17:19239740-19240025:+|nuORF REV__ENST00000314728.9_1_17:19239740-19240025:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1641540527344 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 176.07 1 171.28 170.78 171.78 -4.7898 0 0 0 0.23508 1 36000 36000 2.7352 0 1 + 7431 20511 4596 4600 7707 7707 0.00691620414204408 DPPLVIACT 9 Unmodified _DPPLVIACT_ 0 0 0 REV__ENST00000314728.9_1_17:19239740-19240025:+|nuORF REV__ENST00000314728.9_1_17:19239740-19240025:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16436767578125 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 176.29 1 171.5 171 172 -4.7898 0 0 0 0.19638 1 36047 36047 0.0033805 0 1 + 7432 20511 4596 4600 7708 7708 0.00691620414204408 DPPQQPWFY 9 Unmodified _DPPQQPWFY_ 0 0 0 REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2908630371094 3 393.181946 1176.52401 -0.074665 -2.9357E-05 -0.25365 -9.9732E-05 -0.32832 -0.00012909 393.181742289603 21.444 0.98708 21.444 20.816 21.804 0 73 28 3 0 0 0 0.88413 1 3650 3650 0.23584 0 1 2220200 + 7433 15453 4597 4601 7709 7709 -0.05719133936418075 DPPQQPWFY 9 Unmodified _DPPQQPWFY_ 0 0 0 REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 393.181946 1176.52401 0.54883 0.00021579 -1.0666 -0.00041938 -0.51779 -0.00020359 393.18161439860955 23.104 0.87902 21.55 21.061 21.94 -1.5532 0.023229 -0.00049976 NaN 0.23584 52 24 3 NaN NaN NaN NaN 0 NaN NaN 0 1169300 + 7434 15453 4597 4601 -0.05719133936418075 DPPQQPWFY 9 Unmodified _DPPQQPWFY_ 0 0 0 REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 393.181946 1176.52401 -0.091664 -3.6041E-05 -0.56377 -0.00022166 -0.65543 -0.0002577 393.1817592180385 23.04 0.87355 21.587 21.014 21.888 -1.4535 0.059855 9.3373E-05 NaN 0.23584 45 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1259500 + 7435 15453 4597 4601 -0.05719133936418075 DPQDMDKNLNA 11 Unmodified _DPQDMDKNLNA_ 0 0 0 nc|ENSG00000141161|Q8IWX7-2|UNC45B;ENSG00000141161|ENST00000394570|UNC45B;nc|ENSG00000141161|Q8IWX7|UNC45B nc|ENSG00000141161|Q8IWX7-2|UNC45B nc|ENSG00000141161|Q8IWX7-2|UNC45B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7530517578125 2 630.779884 1259.54522 NaN NaN NaN NaN NaN NaN NaN 81.584 1 81.584 81.084 82.084 0 0 0 0 0.22595 1 15889 15889 11.495 0.67078 1 7436 4349 4598 4602 7710 7710 -0.07417536689854387 DPQERAWYD 9 Unmodified _DPQERAWYD_ 0 0 0 ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21 ENSG00000168724|ENST00000648817|DNAJC21 ENSG00000168724|ENST00000648817|DNAJC21 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2573852539062 2 590.256902 1178.49925 NaN NaN NaN NaN NaN NaN NaN 174.54 1 174.54 174.04 175.04 0 0 0 0 0.19632 1 36134 36134 0.073264 0.069883 1 7437 5929 4599 4603 7711 7711 -0.0828581380981177 DPQRVFFQYLE 11 Unmodified _DPQRVFFQYLE_ 0 0 0 REV__ENSG00000139131|ENST00000324868|YARS2 REV__ENSG00000139131|ENST00000324868|YARS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24615478515625 3 481.241865 1440.70376 0.22682 0.00010916 -0.22184 -0.00010676 0.0049872 2.4E-06 481.24186507049046 74.16 1.149 70.483 69.614 70.763 -3.6764 45 32 2 0 0 0 0.6614 1 13869 13869 0.026206 0.02025 1 1690200 + 7438 16501 4600 4604 7712 7712 0.0010412528072265559 DPQSPWHRE 9 Unmodified _DPQSPWHRE_ 0 0 0 REV__ENSG00000188897|ENST00000696174|unknown REV__ENSG00000188897|ENST00000696174|unknown MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3391723632812 2 576.265062 1150.51557 -0.28517 -0.00016433 -1.393 -0.00080274 -1.6782 -0.00096707 576.2641839590367 39.232 0.46287 36.683 36.363 36.825 -2.5491 18 12 2 0 0 0 0.38188 1 7224 7224 26.884 5.3467 1 894040 + 7439 19178 4601 4605 7713 7713 -0.05366687853052099 DPQSPWHRE 9 Unmodified _DPQSPWHRE_ 0 0 0 REV__ENSG00000188897|ENST00000696174|unknown REV__ENSG00000188897|ENST00000696174|unknown MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 576.265062 1150.51557 -0.28517 -0.00016433 -1.393 -0.00080274 -1.6782 -0.00096707 576.2641839590367 39.232 0.46287 36.683 36.363 36.825 -2.5491 -0.0036467 0.00026819 NaN 26.884 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 894040 + 7440 19178 4601 4605 -0.05366687853052099 DPQSPWHRE 9 Unmodified _DPQSPWHRE_ 0 0 0 REV__ENSG00000188897|ENST00000696174|unknown REV__ENSG00000188897|ENST00000696174|unknown MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.265062 1150.51557 0.13729 7.9117E-05 -1.9711 -0.0011359 -1.8338 -0.0010568 576.2641330624742 39.132 0.30784 36.69 36.513 36.821 -2.4419 0.0036467 -0.0003981 NaN 26.884 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 709730 + 7441 19178 4601 4605 -0.05366687853052099 DPQYETYY 8 Unmodified _DPQYETYY_ 0 0 0 MAGI3|p.G354E|1|0.32|ENSG00000081026|chr1:113614643-113614643|G/A|missense_variant MAGI3|p.G354E|1|0.32|ENSG00000081026|chr1:113614643-113614643|G/A|missense_variant MAGI3|p.G354E|1|0.32|ENSG00000081026|chr1:113614643-113614643|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20196533203125 3 360.150312 1077.42911 -0.18372 -6.6168E-05 0.54081 0.00019477 0.35709 0.00012861 360.1503614777181 26.936 1.441 26.936 26.224 27.665 0 83 41 4 0 0 0 0.80867 1 4763 4763 3.9444 1.4459 1 2131500 7442 12104 4602 4606 7714 7714 -0.10651112198274859 DPQYFGILL 9 Unmodified _DPQYFGILL_ 0 0 0 REV__GMPPA|p.L65Sfs*5|1|0.25|ENSG00000144591|chr2:219501527-219501527|C/-|frameshift_variant REV__GMPPA|p.L65Sfs*5|1|0.25|ENSG00000144591|chr2:219501527-219501527|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2817993164062 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 122.58 1 118.03 117.53 118.53 -4.5476 0 0 0 0.23508 1 24163 24163 11.64 3.7301 1 + 7443 16789 4603 4607 7715 7715 0.024552247287829232 DPREFRFTGWM 11 Unmodified _DPREFRFTGWM_ 0 0 0 REV__ENSG00000004142|ENST00000540200|POLDIP2 REV__ENSG00000004142|ENST00000540200|POLDIP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24237060546875 3 481.227561 1440.66085 NaN NaN NaN NaN NaN NaN NaN 59.254 1 56.343 55.843 56.843 -2.9105 0 0 0 0.22632 1 11389 11389 0.172 0.16604 1 + 7444 13833 4604 4608 7716 7716 -0.04184968048389237 DPRGEESCE 9 Unmodified _DPRGEESCE_ 0 0 0 ENST00000249883.9_1_3:134076230-134076503:-|nuORF ENST00000249883.9_1_3:134076230-134076503:-|nuORF ENST00000249883.9_1_3:134076230-134076503:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 341.8076171875 3 341.134556 1020.38184 0.067703 2.3096E-05 -1.5643 -0.00053365 -1.4966 -0.00051055 341.13409101014855 55.433 0.97603 52.297 52.133 53.109 -3.1352 37 27 2 0 0 0 0.62137 1 10278 10278 0.12781 0.0049496 1 3001600 7445 8218 4605 4609 7717 7717 -0.12753714740915711 DPRGEESCE 9 Unmodified _DPRGEESCE_ 0 0 0 ENST00000249883.9_1_3:134076230-134076503:-|nuORF ENST00000249883.9_1_3:134076230-134076503:-|nuORF ENST00000249883.9_1_3:134076230-134076503:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 341.134556 1020.38184 -0.70239 -0.00023961 -0.71774 -0.00024485 -1.4201 -0.00048446 341.13441883235095 55.439 0.72358 52.301 51.833 52.556 -3.1377 0.0019326 0.0004838 NaN 0.12781 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 5584500 7446 8218 4605 4609 -0.12753714740915711 DPRHDPFP 8 Unmodified _DPRHDPFP_ 0 0 0 REV__ENSG00000157330|ENST00000614859|CFAP107 REV__ENSG00000157330|ENST00000614859|CFAP107 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25531005859375 2 490.732866 979.451179 0.12945 6.3524E-05 0.65771 0.00032276 0.78715 0.00038628 490.73323558439296 17.943 0.32274 17.943 17.767 18.09 0 20 8 3 0 0 0 0.9455 1 2877 2877 16.942 0 1 3277800 + 7447 17291 4606 4610 7718 7718 -0.039368429391970494 DPRKQLSAK 9 Unmodified _DPRKQLSAK_ 0 0 0 REV__ENSG00000141564|ENST00000306801|RPTOR REV__ENSG00000141564|ENST00000306801|RPTOR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2627563476562 2 521.803823 1041.59309 0.23918 0.00012481 -0.28864 -0.00015061 -0.049459 -2.5808E-05 521.8034334062629 23.982 0.19863 23.982 23.933 24.132 0 6 5 2 0 0 0 0.87258 1 4144 4144 1.8442 0 1 365510 + 7448 16639 4607 4611 7719 7719 0.073959500831279 DPRLVISY 8 Unmodified _DPRLVISY_ 0 0 0 ENSG00000265203|ENST00000584701|RBP3;RBP3|p.G237Afs*33|1|0.2|ENSG00000265203|chr10:47349191-47349191|G/-|frameshift_variant ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76739501953125 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 163.77 1 158.71 158.21 159.21 -5.0648 0 0 0 0.18898 1 31889 31889 28.487 10.352 1 7449 7975 4608 4612 7720 7720 0.040980714145121055 DPRVPMLT 8 Unmodified _DPRVPMLT_ 0 0 0 UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1;ENST00000566493.1_1_15:43280936-43282283:-|nuORF UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16943359375 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 44.789 1 44.789 44.289 45.289 0 0 0 0 0.21486 1 8409 8409 3.5965 1.7523 1 7450 5209 4609 4613 7721 7721 0.018144425083505666 DPRYYRHV 8 Unmodified _DPRYYRHV_ 0 0 0 REV__ENSG00000204954|ENST00000378090|UQCC6 REV__ENSG00000204954|ENST00000378090|UQCC6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 369.19000244140625 3 369.189435 1104.54648 NaN NaN NaN NaN NaN NaN NaN 94.111 1 90.267 89.767 90.767 -3.844 0 0 0 0.21486 1 18051 18051 1.3295 0.13619 1 + 7451 19575 4610 4614 7722 7722 -0.0016148974816587724 DPSCGFARRA 10 Unmodified _DPSCGFARRA_ 0 0 0 ENST00000393832.7_1_4:156588357-156618096:+|nuORF;ENST00000509901.5_1_4:156588357-156617929:+|nuORF ENST00000393832.7_1_4:156588357-156618096:+|nuORF ENST00000393832.7_1_4:156588357-156618096:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2582397460938 2 540.256182 1078.49781 0.18626 0.00010063 -1.647 -0.0008898 -1.4607 -0.00078917 540.2554865777934 15.611 0.30666 15.611 15.473 15.779 0 21 8 3 0 0 0 0.59928 1 2393 2393 19.257 2.3147 1 1026300 7452 9398 4611 4615 7723 7723 -0.03829726379558451 DPSCGFARRA 10 Unmodified _DPSCGFARRA_ 0 0 0 ENST00000393832.7_1_4:156588357-156618096:+|nuORF;ENST00000509901.5_1_4:156588357-156617929:+|nuORF ENST00000393832.7_1_4:156588357-156618096:+|nuORF ENST00000393832.7_1_4:156588357-156618096:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.256182 1078.49781 0.18626 0.00010063 -1.647 -0.0008898 -1.4607 -0.00078917 540.2554865777934 15.611 0.30666 15.611 15.473 15.779 0 0.041141 -0.00089344 NaN 19.257 21 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1026300 7453 9398 4611 4615 -0.03829726379558451 DPSCGFARRA 10 Unmodified _DPSCGFARRA_ 0 0 0 ENST00000393832.7_1_4:156588357-156618096:+|nuORF;ENST00000509901.5_1_4:156588357-156617929:+|nuORF ENST00000393832.7_1_4:156588357-156618096:+|nuORF ENST00000393832.7_1_4:156588357-156618096:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.256182 1078.49781 -0.16754 -9.0516E-05 -0.72383 -0.00039105 -0.89138 -0.00048157 540.2558943138248 16.656 0.28244 15.44 15.285 15.567 -1.2159 -0.12996 0.00010405 NaN 19.257 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 813500 7454 9398 4611 4615 -0.03829726379558451 DPSCGFARRA 10 Unmodified _DPSCGFARRA_ 0 0 0 ENST00000393832.7_1_4:156588357-156618096:+|nuORF;ENST00000509901.5_1_4:156588357-156617929:+|nuORF ENST00000393832.7_1_4:156588357-156618096:+|nuORF ENST00000393832.7_1_4:156588357-156618096:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.256182 1078.49781 -1.2725 -0.00068746 0.53593 0.00028954 -0.73654 -0.00039792 540.2566352603739 17.174 0.28353 15.659 15.521 15.804 -1.5148 0.088821 0.0014652 NaN 19.257 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 167880 7455 9398 4611 4615 -0.03829726379558451 DPSIDVLLLT 10 Unmodified _DPSIDVLLLT_ 0 0 0 nc|ENSG00000095564|O14981-2|BTAF1;ENSG00000095564|ENST00000265990|BTAF1 nc|ENSG00000095564|O14981-2|BTAF1 nc|ENSG00000095564|O14981-2|BTAF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.3511352539062 2 543.308072 1084.60159 NaN NaN NaN NaN NaN NaN NaN 166.99 1 162.09 161.59 162.59 -4.8916 0 0 0 0.22588 1 32781 32781 10.074 2.7847 1 7456 1863 4612 4616 7724 7724 0.06267459209107074 DPSLDFRN 8 Unmodified _DPSLDFRN_ 0 0 0 KANSL1|p.G179Efs*23|2|0.22|ENSG00000120071|chr17:46171608-46171608|C/-|frameshift_variant;KANSL1|p.G204Vfs*2|2|0.24|ENSG00000120071|chr17:46171533-46171533|C/-|frameshift_variant;KANSL1|p.K267Sfs*12|1|0.22|ENSG00000120071|chr17:46171344-46171344|T/-|frameshift_variant;KANSL1|p.G260Vfs*19|5|0.26|ENSG00000120071|chr17:46171365-46171365|C/-|frameshift_variant;KANSL1|p.K437Nfs*43|1|0.37|ENSG00000120071|chr17:46094680-46094680|T/-|frameshift_variant;KANSL1|p.Q968Sfs*46|1|0.27|ENSG00000120071|chr17:46032235-46032235|G/-|frameshift_variant;ENSG00000120071|ENST00000432791|KANSL1 KANSL1|p.G179Efs*23|2|0.22|ENSG00000120071|chr17:46171608-46171608|C/-|frameshift_variant KANSL1|p.G179Efs*23|2|0.22|ENSG00000120071|chr17:46171608-46171608|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7688903808594 2 482.230156 962.445759 -0.36812 -0.00017752 -1.3407 -0.00064652 -1.7088 -0.00082404 482.22981360705916 36.684 0.63107 34.215 33.904 34.535 -2.4688 23 17 2 0 0 0 0.96284 1 6822 6822 13.508 1.8676 1 502600 7457 3118 4613 4617 7725 7725 -0.03696566521659861 DPSLGHMIVT 10 Unmodified _DPSLGHMIVT_ 0 0 0 ENSG00000135577|ENST00000258042|NMBR ENSG00000135577|ENST00000258042|NMBR ENSG00000135577|ENST00000258042|NMBR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5594177246094 3 357.18307 1068.52738 -0.24402 -8.7159E-05 0.72861 0.00026025 0.48459 0.00017309 357.1833819379681 31.961 0.55359 31.961 31.671 32.224 0 22 15 2 0 0 0 0.91149 1 5750 5750 5.7834 3.2849 1 1501800 7458 3936 4614 4618 7726 7726 -0.004142071540627512 DPSPPPPGR 9 Unmodified _DPSPPPPGR_ 0 0 0 ENST00000550078.2_2_1:203764919-203765303:+|nuORF ENST00000550078.2_2_1:203764919-203765303:+|nuORF ENST00000550078.2_2_1:203764919-203765303:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23785400390625 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 67.673 1 64.564 64.064 65.064 -3.1086 0 0 0 0.21065 1 13129 13129 20.454 0 1 7459 11171 4615 4619 7727 7727 -0.006559587964261482 DPSQCDANNM 10 Unmodified _DPSQCDANNM_ 0 0 0 SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant;SPAG17|p.L1608Ifs*4|1|0.34|ENSG00000155761|chr1:117996698-117996699|-/T|frameshift_variant;SPAG17|p.T1729Lfs*21|2|0.43|ENSG00000155761|chr1:117992642-117992642|T/-|frameshift_variant;ENSG00000155761|ENST00000336338|SPAG17 SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7841796875 2 547.697506 1093.38046 0.34207 0.00018735 -1.1969 -0.00065553 -0.85482 -0.00046818 547.6982594308538 156.5 0.1804 151.71 151.59 151.77 -4.7885 6 4 2 0 0 0 1.1302 1 31124 31124 0.26539 0.19213 1 918900 7460 5062 4616 4620 7728 7728 -0.16249672101344004 DPSSDCGG 8 Unmodified _DPSSDCGG_ 0 0 0 ENST00000389048.7_2_2:30143734-30144202:-|nuORF ENST00000389048.7_2_2:30143734-30144202:-|nuORF ENST00000389048.7_2_2:30143734-30144202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 369.2054443359375 2 369.123968 736.233383 NaN NaN NaN NaN NaN NaN NaN 44.512 1 41.745 41.245 42.245 -2.7661 0 0 0 0.23749 1 8060 8060 0.0082765 0 1 7461 9352 4617 4621 7729 7729 -0.14528400923961726 DPSSLSSSTLS 11 Unmodified _DPSSLSSSTLS_ 0 0 0 REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1 REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2581787109375 2 540.756401 1079.49825 0.18878 0.00010208 1.0776 0.00058272 1.2664 0.0006848 540.7570871256596 15.269 0.13622 15.269 15.193 15.33 0 5 3 2 0 0 0 0.88709 1 2325 2325 18.146 1.0335 1 342250 + 7462 16914 4618 4622 7730 7730 -0.038320729693623434 DPSSNFCNY 9 Unmodified _DPSSNFCNY_ 0 0 0 ENSG00000198915|ENST00000395810|RASGEF1A;nc|ENSG00000198915|Q8N9B8-2|RASGEF1A ENSG00000198915|ENST00000395810|RASGEF1A ENSG00000198915|ENST00000395810|RASGEF1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.696533203125 2 523.697832 1045.38111 -0.52181 -0.00027327 -1.5168 -0.00079436 -2.0386 -0.0010676 523.6968459064317 50.556 0.6461 47.511 47.089 47.735 -3.0453 31 18 2 0 0 0 0.46598 2 9217 9217;9219 12.532 3.9383 1 1271300 7463 7523 4619 4623 7731;7732 7731 -0.13976509389976854 DPSSNFCNY 9 Unmodified _DPSSNFCNY_ 0 0 0 ENSG00000198915|ENST00000395810|RASGEF1A;nc|ENSG00000198915|Q8N9B8-2|RASGEF1A ENSG00000198915|ENST00000395810|RASGEF1A ENSG00000198915|ENST00000395810|RASGEF1A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.697832 1045.38111 -0.016091 -8.4267E-06 -2.6174 -0.0013707 -2.6335 -0.0013792 523.6963060575586 50.463 0.41302 47.416 47.269 47.682 -3.047 -0.040993 -0.0007007 NaN 12.532 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 701740 7464 7523 4619 4623 -0.13976509389976854 DPSTPLVDL 9 Unmodified _DPSTPLVDL_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7278137207031 2 478.75039 955.486227 0.068598 3.2842E-05 1.1053 0.00052919 1.1739 0.00056203 478.75029067175603 128.19 0.68084 123.56 123.26 123.94 -4.6292 41 18 4 0 0 0 0.23667 1 25315 25315 26.884 0 1 2406500 7465 7268 4620 4624 7733 7733 0.006703550781026024 DPSTPLVDL 9 Unmodified _DPSTPLVDL_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73895263671875 2 478.75039 955.486227 0.13369 6.4003E-05 -0.10842 -5.1908E-05 0.025263 1.2095E-05 478.75019926786035 128.52 0.64389 123.7 123.37 124.02 -4.817 27 17 2 0 0 0 0.28156 1 24699 24699 25.399 4.9457 1 1616700 7466 7268 4620 4624 7734 7734 0.006703550781026024 DPSVLIGV 8 Unmodified _DPSVLIGV_ 0 0 0 REV__ENSG00000163376|ENST00000417314|KBTBD8 REV__ENSG00000163376|ENST00000417314|KBTBD8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.2540283203125 2 400.231636 798.448719 NaN NaN NaN NaN NaN NaN NaN 79.704 1 76.194 75.694 76.694 -3.5102 0 0 0 0.21486 1 15567 15567 9.3474 0 1 + 7467 17564 4621 4625 7735 7735 0.04143308603158857 DPTEGPQSHSP 11 Unmodified _DPTEGPQSHSP_ 0 0 0 REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18 REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3319702148438 2 576.251817 1150.48908 0.34142 0.00019674 0.10786 6.2154E-05 0.44928 0.0002589 576.251817033211 24.917 0.47079 24.917 24.647 25.118 0 25 13 2 0 0 0 0.48275 1 4299 4299 36.506 13.77 1 1309100 + 7468 14949 4622 4626 7736 7736 -0.08014421535040128 DPTEGPQSHSP 11 Unmodified _DPTEGPQSHSP_ 0 0 0 REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18 REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3192749023438 2 576.251817 1150.48908 1.0543 0.00060757 -0.55973 -0.00032254 0.49461 0.00028502 576.2515476363264 26.747 0.58224 24.965 24.655 25.238 -1.7821 37 16 3 0 0 0 0.86301 1 4779 4779 16.149 3.1066 1 1039200 + 7469 14949 4622 4626 7737 7737 -0.08014421535040128 DPTEGPQSHSP 11 Unmodified _DPTEGPQSHSP_ 0 0 0 REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18 REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3154296875 2 576.251817 1150.48908 0.09674 5.5746E-05 0.16503 9.5098E-05 0.26177 0.00015084 576.2519716957255 26.851 0.55009 24.929 24.675 25.226 -1.9222 28 15 2 0 0 0 0.46138 1 4460 4460 39.95 15.929 1 1151200 + 7470 14949 4622 4626 7738 7738 -0.08014421535040128 DPTEGPQSHSP 11 Unmodified _DPTEGPQSHSP_ 0 0 0 REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18 REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.251817 1150.48908 0.34142 0.00019674 0.10786 6.2154E-05 0.44928 0.0002589 576.251817033211 24.917 0.47079 24.917 24.647 25.118 0 -0.032712 0.00010608 NaN 39.95 25 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1309100 + 7471 14949 4622 4626 -0.08014421535040128 DPTIDQCSV 9 Unmodified _DPTIDQCSV_ 0 0 0 REV__ENSG00000168754|ENST00000490605|FAM178B REV__ENSG00000168754|ENST00000490605|FAM178B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 489.77178955078125 2 489.215857 976.417161 0.11587 5.6687E-05 -0.14219 -6.9561E-05 -0.026315 -1.2873E-05 489.2157280873345 45.13 0.60959 42.34 41.989 42.599 -2.79 29 16 2 0 0 0 0.47976 1 8439 8439 1.2148 0 1 2266900 + 7472 18049 4623 4627 7739 7739 -0.07199052213104551 DPTKPIDPP 9 Unmodified _DPTKPIDPP_ 0 0 0 REV__ENSG00000248905|ENST00000616417|FMN1 REV__ENSG00000248905|ENST00000616417|FMN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2558898925781 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 20 1 18.365 17.865 18.865 -1.6351 0 0 0 0.23508 1 3052 3052 11.64 3.047 1 + 7473 19818 4624 4628 7740 7740 0.012100613149868877 DPTPEHDFS 9 Unmodified _DPTPEHDFS_ 0 0 0 ENSG00000144031|ENST00000360589|ANKRD53 ENSG00000144031|ENST00000360589|ANKRD53 ENSG00000144031|ENST00000360589|ANKRD53 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.2855834960938 2 522.717079 1043.4196 -0.592 -0.00030945 -0.76699 -0.00040092 -1.359 -0.00071037 522.7173051509202 138.01 0.17264 133.09 132.97 133.14 -4.9215 5 4 2 0 0 0 0.6215 1 26542 26542 0.40827 0 1 813920 7474 4539 4625 4629 7741 7741 -0.100368804837899 DPTPRPSQG 9 Unmodified _DPTPRPSQG_ 0 0 0 REV__nc|ENSG00000124155|Q969N2-3|PIGT REV__nc|ENSG00000124155|Q969N2-3|PIGT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7351379394531 2 477.735606 953.456658 -0.1703 -8.136E-05 0.23818 0.00011379 0.067874 3.2426E-05 477.73555720422166 16.561 0.8305 16.561 16.129 16.96 0 50 23 3 0 0 0 0.64382 1 2548 2548 10.074 0.6908 1 1544600 + 7475 24022 4626 4630 7742 7742 -0.02193164147377047 DPTVTVTID 9 Unmodified _DPTVTVTID_ 0 0 0 REV__PFAS|p.A836V|1|0.15|ENSG00000178921|chr17:8265601-8265601|C/T|missense_variant REV__PFAS|p.A836V|1|0.15|ENSG00000178921|chr17:8265601-8265601|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24896240234375 2 480.747847 959.481142 -0.066966 -3.2194E-05 0.036749 1.7667E-05 -0.030217 -1.4527E-05 480.74776180197085 111.48 0.62951 106.99 106.64 107.27 -4.4915 38 17 3 0 0 0 0.12935 1 21363 21363 14.987 12.104 1 6050200 + 7476 24456 4627 4631 7743 7743 -0.0002194878450154647 DPVEEGRLGR 10 Unmodified _DPVEEGRLGR_ 0 0 0 REV__ENST00000405925.2_1_13:108863643-108870712:-|nuORF REV__ENST00000405925.2_1_13:108863643-108870712:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1172180175781 3 376.531638 1126.57309 0.10372 3.9052E-05 0.037655 1.4178E-05 0.14137 5.323E-05 376.5315875853229 37.031 0.82211 34.683 34.277 35.099 -2.3479 39 23 2 0 0 0 0.91149 1 6524 6524 3.3196 0.82116 1 999220 + 7477 21387 4628 4632 7744 7744 0.014861543525285015 DPVELPNFR 9 Unmodified _DPVELPNFR_ 0 0 0 ENST00000563517.5_1_15:43663326-43663422:+|nuORF ENST00000563517.5_1_15:43663326-43663422:+|nuORF ENST00000563517.5_1_15:43663326-43663422:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.779541015625 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 13.93 1 12.719 12.219 13.219 -1.2106 0 0 0 0.23508 1 1805 1805 4.3292 0 1 7478 11333 4629 4633 7745 7745 0.011205549548776617 DPVQLDFHFR 10 Unmodified _DPVQLDFHFR_ 0 0 0 nc|ENSG00000143450|Q9UMX2-2|OAZ3;ENSG00000143450|ENST00000400999|OAZ3 nc|ENSG00000143450|Q9UMX2-2|OAZ3 nc|ENSG00000143450|Q9UMX2-2|OAZ3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2420654296875 3 425.21565 1272.62512 NaN NaN NaN NaN NaN NaN NaN 53.237 1 50.353 49.853 50.853 -2.8837 0 0 0 0.22588 1 10140 10140 11.518 1.3673 1 7479 4490 4630 4634 7746 7746 -0.0002868223373297951 DPVRERHFA 9 Unmodified _DPVRERHFA_ 0 0 0 REV__ADRB1|p.L353R|1|0.19|ENSG00000043591|chr10:114045190-114045190|T/G|missense_variant REV__ADRB1|p.L353R|1|0.19|ENSG00000043591|chr10:114045190-114045190|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1180725097656 3 376.19659 1125.56794 NaN NaN NaN NaN NaN NaN NaN 37.149 1 34.802 34.302 35.302 -2.3479 0 0 0 0.23508 1 6581 6581 4.897 0.36815 1 + 7480 12970 4631 4635 7747 7747 0.010178952805745212 DPVYTKLV 8 Unmodified _DPVYTKLV_ 0 0 0 REV__PLCB4|p.P887Lfs*31|1|0.08|ENSG00000101333|chr20:9437081-9437081|C/-|frameshift_variant REV__PLCB4|p.P887Lfs*31|1|0.08|ENSG00000101333|chr20:9437081-9437081|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.216552734375 3 312.179654 933.517133 NaN NaN NaN NaN NaN NaN NaN 61.519 1 58.558 58.058 59.058 -2.9614 0 0 0 0.21486 1 11862 11862 1.4819 0 1 + 7481 14779 4632 4636 7748 7748 0.047715531829908286 DPWHRVLR 8 Unmodified _DPWHRVLR_ 0 0 0 ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201904296875 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 149.48 1 149.48 148.98 149.98 0 0 0 0 0.21486 1 29926 29926 3.9444 0.35734 1 7482 11409 4633 4637 7749 7749 0.047508068684237514 DPWHRVLR 8 Unmodified _DPWHRVLR_ 0 0 0 ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2021179199219 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 80.288 1 76.777 76.277 77.277 -3.5102 0 0 0 0.21486 1 15681 15681 3.2813 1.3749 1 7483 11409 4633 4637 7750 7750 0.047508068684237514 DPWHRVLR 8 Unmodified _DPWHRVLR_ 0 0 0 ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20220947265625 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 154.55 1 149.77 149.27 150.27 -4.7791 0 0 0 0.21486 1 30720 30720 1.6526 0.58116 1 7484 11409 4633 4637 7751 7751 0.047508068684237514 DPWHRVLR 8 Unmodified _DPWHRVLR_ 0 0 0 ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20184326171875 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 157.09 1 151.8 151.3 152.3 -5.2854 0 0 0 0.21486 1 30480 30480 3.9444 1.2092 1 7485 11409 4633 4637 7752 7752 0.047508068684237514 DPWHRVLR 8 Unmodified _DPWHRVLR_ 0 0 0 ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 157.33 1 152.05 151.55 152.55 -5.2854 0 0 0 0.21486 1 30529 30529 3.9444 0.35734 1 7486 11409 4633 4637 7753 7753 0.047508068684237514 DPWHRVLR 8 Unmodified _DPWHRVLR_ 0 0 0 ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012939453125 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 157.65 1 152.36 151.86 152.86 -5.2854 0 0 0 0.21486 1 30595 30595 1.4819 0.41044 1 7487 11409 4633 4637 7754 7754 0.047508068684237514 DPWHRVLR 8 Unmodified _DPWHRVLR_ 0 0 0 ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF ENST00000569840.6_1_17:74928850-74934194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017822265625 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 157.43 1 152.16 151.66 152.66 -5.2712 0 0 0 0.21486 1 30538 30538 3.9444 1.2092 1 7488 11409 4633 4637 7755 7755 0.047508068684237514 DPWKTNYR 8 Unmodified _DPWKTNYR_ 0 0 0 ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.8513488769531 3 360.513807 1078.51959 0.85984 0.00030998 -0.91459 -0.00032972 -0.054753 -1.9739E-05 360.5134441505147 25.248 0.69532 23.6 23.235 23.931 -1.6482 57 19 4 0 0 0 8448 1 4416 4416 6.2058 5.9404 1 21056000 7489 4259 4634 4638 7756 7756 -0.016525983593737692 DPYKLMSDR 9 Unmodified _DPYKLMSDR_ 0 0 0 REV__nc|ENSG00000143575|O00165-5|HAX1 REV__nc|ENSG00000143575|O00165-5|HAX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2120666503906 3 375.518341 1123.53319 -0.15451 -5.8023E-05 -0.14406 -5.4098E-05 -0.29858 -0.00011212 375.5182711976468 22.351 0.66409 22.351 21.945 22.609 0 29 18 2 0 0 0 0.87262 1 3747 3747 8.7454 1.1365 1 684780 + 7490 16739 4635 4639 7757 7757 -0.02363108642384759 DPYKLMSDR 9 Unmodified _DPYKLMSDR_ 0 0 0 REV__nc|ENSG00000143575|O00165-5|HAX1 REV__nc|ENSG00000143575|O00165-5|HAX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.518341 1123.53319 -0.02704 -1.0154E-05 -0.47776 -0.00017941 -0.5048 -0.00018956 375.5182289382729 23.778 0.3378 22.244 21.99 22.328 -1.5342 -0.053877 -0.00020304 NaN 5.2969 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 328510 + 7491 16739 4635 4639 -0.02363108642384759 DPYSRISQE 9 Unmodified _DPYSRISQE_ 0 0 0 HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7720947265625 2 547.759278 1093.504 NaN NaN NaN NaN NaN NaN NaN 38.232 1 35.763 35.263 36.263 -2.4688 0 0 0 0.19704 1 7080 7080 0.40827 0.028676 1 7492 1827 4636 4640 7758 7758 -0.03900929667042874 DQALANLLG 9 Unmodified _DQALANLLG_ 0 0 0 REV__ENST00000471704.1_1_2:62132813-62228123:+|nuORF REV__ENST00000471704.1_1_2:62132813-62228123:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2417297363281 2 457.750724 913.486896 -0.075151 -3.44E-05 0.29776 0.0001363 0.22261 0.0001019 457.7508141227856 80.638 1.1546 77.081 76.602 77.757 -3.557 70 32 3 0 0 0 0.17935 1 15662 15662 39.95 1.9757 1 14392000 + 7493 18331 4637 4641 7759 7759 0.02669194517818596 DQALPHTETA 10 Unmodified _DQALPHTETA_ 0 0 0 REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2 REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2759399414062 2 541.759278 1081.504 0.13895 7.528E-05 -1.1689 -0.00063324 -1.0299 -0.00055796 542.2595918195904 43.63 0.31385 40.878 40.74 41.054 -2.7524 14 8 2 0 0 0 0.87854 1 8206 8206 5.7319 0 1 656530 + 7494 24682 4638 4642 7760 7760 -0.033489296670495605 DQALPHTETA 10 Unmodified _DQALPHTETA_ 0 0 0 REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2 REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.269775390625 2 541.759278 1081.504 0.040661 2.2029E-05 -0.88172 -0.00047768 -0.84106 -0.00045565 541.7592930578124 43.549 0.45485 40.801 40.625 41.08 -2.7475 16 12 2 0 0 0 0.67319 1 7871 7871 13.906 0.86358 1 690620 + 7495 24682 4638 4642 7761 7761 -0.033489296670495605 DQALPHTETA 10 Unmodified _DQALPHTETA_ 0 0 0 REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2 REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2625732421875 2 541.759278 1081.504 0.040661 2.2029E-05 -0.88172 -0.00047768 -0.84106 -0.00045565 541.7592930578124 43.549 0.45485 40.801 40.625 41.08 -2.7475 16 12 2 0 0 0 0.86078 1 7844 7844 12.241 5.5175 1 690620 + 7496 24682 4638 4642 7762 7762 -0.033489296670495605 DQALPHTETA 10 Unmodified _DQALPHTETA_ 0 0 0 REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2 REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 541.759278 1081.504 -0.0060711 -3.2891E-06 -2.0702 -0.0011215 -2.0762 -0.0011248 542.2596736214332 43.589 0.43073 40.823 40.611 41.042 -2.7661 -0.011037 -0.00096504 NaN 13.906 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1280100 + 7497 24682 4638 4642 -0.033489296670495605 DQAQFVAAA 9 Unmodified _DQAQFVAAA_ 0 0 0 REV__nc|ENSG00000120729|Q9UBF9-2|MYOT REV__nc|ENSG00000120729|Q9UBF9-2|MYOT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2279052734375 2 460.727249 919.439946 0.22754 0.00010484 1.7919 0.00082557 2.0194 0.00093041 460.7281808701212 22.769 0.42677 22.769 22.466 22.892 0 13 11 2 0 0 0 0.85111 1 3872 3872 6.7232 0 1 795010 + 7498 15632 4639 4643 7763 7763 -0.02299665033342535 DQARPLLRI 9 Unmodified _DQARPLLRI_ 0 0 0 REV__ENST00000522126.5_1_5:141021104-141024617:-|nuORF REV__ENST00000522126.5_1_5:141021104-141024617:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.2126159667969 3 361.220735 1080.64038 NaN NaN NaN NaN NaN NaN NaN 106.66 1 102.28 101.78 102.78 -4.3764 0 0 0 0.23508 1 20460 20460 0.96228 0 1 + 7499 19376 4640 4644 7764 7764 0.10328229354126961 DQCCAAWC 8 Unmodified _DQCCAAWC_ 0 0 0 REV__KIAA0319L|p.I439Nfs*10|1|0.33|ENSG00000142687|chr1:35460416-35460417|-/T|frameshift_variant REV__KIAA0319L|p.I439Nfs*10|1|0.33|ENSG00000142687|chr1:35460416-35460417|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.2457275390625 2 450.145866 898.277179 NaN NaN NaN NaN NaN NaN NaN 109.77 1 105.59 105.09 106.09 -4.1826 0 0 0 0.2396 1 21125 21125 0.12286 0 1 + 7500 16684 4641 4645 7765 7765 -0.17602831022861665 DQCELDCDECH 11 Unmodified _DQCELDCDECH_ 0 0 0 VCAN|p.F3128C|1|0.34|ENSG00000038427|chr5:83547974-83547974|T/G|missense_variant VCAN|p.F3128C|1|0.34|ENSG00000038427|chr5:83547974-83547974|T/G|missense_variant VCAN|p.F3128C|1|0.34|ENSG00000038427|chr5:83547974-83547974|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21466064453125 3 437.142505 1308.40569 NaN NaN NaN NaN NaN NaN NaN 29.565 1 27.49 26.99 27.99 -2.0743 0 0 0 0.2367 1 5030 5030 1.2148 0 1 7501 26569 4642 4646 7766 7766 -0.23617985361079263 DQCEPDEGRFD 11 Unmodified _DQCEPDEGRFD_ 0 0 0 REV__ENSG00000099625|ENST00000650044|CBARP REV__ENSG00000099625|ENST00000650044|CBARP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21575927734375 3 437.503308 1309.48809 0.5557 0.00024312 0.18727 8.1931E-05 0.74297 0.00032505 437.8376062939936 102.79 0.4841 102.79 102.48 102.97 0 26 13 3 0 0 0 0.96068 1 20177 20177 5.8681 2.2811 1 1405300 + 7502 14641 4643 4647 7767 7767 -0.154270039662606 DQDEKGKARDF 11 Unmodified _DQDEKGKARDF_ 0 0 0 SCNN1G|p.H439Sfs*28|1|0.07|ENSG00000166828|chr16:23212696-23212697|-/CTCTG|frameshift_variant;SCNN1G|p.K626Qfs*23|1|0.1|ENSG00000166828|chr16:23215388-23215389|-/C|frameshift_variant;ENSG00000166828|ENST00000300061|SCNN1G SCNN1G|p.H439Sfs*28|1|0.07|ENSG00000166828|chr16:23212696-23212697|-/CTCTG|frameshift_variant SCNN1G|p.H439Sfs*28|1|0.07|ENSG00000166828|chr16:23212696-23212697|-/CTCTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2174072265625 3 436.877474 1307.61059 NaN NaN NaN NaN NaN NaN NaN 79.643 1 75.967 75.467 76.467 -3.676 0 0 0 0.23211 1 15176 15176 6.6235 0.75532 1 7503 5751 4644 4648 7768 7768 -0.030907991725371176 DQDFWCPDSY 10 Unmodified _DQDFWCPDSY_ 0 0 0 ENSG00000165757|ENST00000375377|JCAD ENSG00000165757|ENST00000375377|JCAD ENSG00000165757|ENST00000375377|JCAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2430419921875 3 425.825611 1274.455 -0.13412 -5.711E-05 -0.10314 -4.3919E-05 -0.23726 -0.00010103 426.15972510808956 78.614 0.17917 75.151 75.039 75.218 -3.4633 6 4 2 0 0 0 1.1318 1 15347 15347 0.043787 0.017581 1 728980 7504 5660 4645 4649 7769 7769 -0.1712458601830349 DQDIALQPG 9 Unmodified _DQDIALQPG_ 0 0 0 AluSz_dup101715|chr22:30660842-30661140:-|1.4532773959523846|0.4395440284853391|1.73|482.0|3|1|sense AluSz_dup101715|chr22:30660842-30661140:-|1.4532773959523846|0.4395440284853391|1.73|482.0|3|1|sense AluSz_dup101715|chr22:30660842-30661140:-|1.4532773959523846|0.4395440284853391|1.73|482.0|3|1|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73858642578125 2 478.737814 955.461075 0.23632 0.00011313 0.16566 7.9306E-05 0.40197 0.00019244 478.73812338398 62.985 0.30631 59.729 59.574 59.88 -3.2567 12 8 2 0 0 0 0.067773 1 11811 11811 65.235 2.6623 1 699570 7505 136 4646 4650 7770 7770 -0.018436997244634767 DQDIALQPG 9 Unmodified _DQDIALQPG_ 0 0 0 AluSz_dup101715|chr22:30660842-30661140:-|1.4532773959523846|0.4395440284853391|1.73|482.0|3|1|sense AluSz_dup101715|chr22:30660842-30661140:-|1.4532773959523846|0.4395440284853391|1.73|482.0|3|1|sense AluSz_dup101715|chr22:30660842-30661140:-|1.4532773959523846|0.4395440284853391|1.73|482.0|3|1|sense MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.737814 955.461075 0.083345 3.99E-05 0.64234 0.00030751 0.72568 0.00034741 478.73813485211696 62.658 0.41589 59.696 59.536 59.952 -2.9614 -0.016155 0.00030405 NaN 65.235 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 593790 7506 136 4646 4650 -0.018436997244634767 DQDRTAPI 8 Unmodified _DQDRTAPI_ 0 0 0 REV__nc|ENSG00000026508|P16070-15|CD44 REV__nc|ENSG00000026508|P16070-15|CD44 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2298278808594 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 146.74 1 142.05 141.55 142.55 -4.6868 0 0 0 0.22647 1 29104 29104 0.68139 0 1 + 7507 23931 4647 4651 7771 7771 -0.014885665216866073 DQDRTAPI 8 Unmodified _DQDRTAPI_ 0 0 0 REV__nc|ENSG00000026508|P16070-15|CD44 REV__nc|ENSG00000026508|P16070-15|CD44 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2291564941406 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 147.16 1 142.16 141.66 142.66 -5 0 0 0 0.22692 1 28483 28483 0.25148 0 1 + 7508 23931 4647 4651 7772 7772 -0.014885665216866073 DQDVQPARY 9 Unmodified _DQDVQPARY_ 0 0 0 ENSG00000169992|ENST00000302926|NLGN2 ENSG00000169992|ENST00000302926|NLGN2 ENSG00000169992|ENST00000302926|NLGN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7899780273438 2 546.259445 1090.50434 0.55199 0.00030153 -0.6397 -0.00034944 -0.087705 -4.791E-05 546.2591079098203 76.126 1.6064 76.126 75.578 77.185 0 136 45 5 0 0 0 0.25183 1 14750 14750 34.402 3.1334 1 123880000 7509 6029 4648 4652 7773 7773 -0.037295099471975846 DQEDDQFRRLF 11 Unmodified _DQEDDQFRRLF_ 0 0 0 ENSG00000203697|ENST00000366872|CAPN8 ENSG00000203697|ENST00000366872|CAPN8 ENSG00000203697|ENST00000366872|CAPN8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2630920410156 3 490.232028 1467.67426 NaN NaN NaN NaN NaN NaN NaN 119.77 1 115.12 114.62 115.62 -4.645 0 0 0 0.22632 1 22986 22986 0.026206 0 1 7510 7539 4649 4653 7774 7774 -0.040874387354506325 DQEEIDYDDT 10 Unmodified _DQEEIDYDDT_ 0 0 0 F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant;ENSG00000185010|ENST00000360256|F8 F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7549438476562 2 621.735862 1241.45717 0.3024 0.00018801 -4.0902 -0.002543 -3.7878 -0.002355 622.7354737714056 55.427 0.34511 52.291 52.133 52.478 -3.1352 22 9 4 0 0 0 0.71097 1 10246 10246 10.074 0.6908 1 3302400 7511 6953 4650 4654 7775 7775 -0.1538987879951037 DQEIREKTEMY 11 Unmodified _DQEIREKTEMY_ 0 0 0 REV__nc|ENSG00000183347|Q6ZN66-2|GBP6 REV__nc|ENSG00000183347|Q6ZN66-2|GBP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2538146972656 3 481.225775 1440.65549 0.32117 0.00015455 -0.33271 -0.00016011 -0.011549 -5.5575E-06 481.2256889004918 104.17 0.65578 104.17 103.86 104.52 0 43 18 3 0 0 0 0.72919 1 20469 20469 9.7643 3.1408 1 2824000 + 7512 18831 4651 4655 7776 7776 -0.047207364214955305 DQEKELYFRKK 11 Unmodified _DQEKELYFRKK_ 0 0 0 ENST00000399201.5_1_21:37431190-37451630:-|nuORF ENST00000399201.5_1_21:37431190-37451630:-|nuORF ENST00000399201.5_1_21:37431190-37451630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.396484375 2 742.398815 1482.78308 NaN NaN NaN NaN NaN NaN NaN 152.66 1 147.39 146.89 147.89 -5.2669 0 0 0 0.22632 1 29598 29598 0.026206 0 1 7513 9494 4652 4656 7777 7777 0.06099772234824741 DQELSQLALY 10 Unmodified _DQELSQLALY_ 0 0 0 REV__ENSG00000125686|ENST00000300651|MED1 REV__ENSG00000125686|ENST00000300651|MED1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.249755859375 2 590.298236 1178.58192 NaN NaN NaN NaN NaN NaN NaN 130.77 1 125.94 125.44 126.44 -4.8355 0 0 0 0.22559 1 25108 25108 17.113 0 1 + 7514 15823 4653 4657 7778 7778 -0.00022916801685823884 DQEPSQSPP 9 Unmodified _DQEPSQSPP_ 0 0 0 SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant;SLX4|p.P1414Hfs*36|1|0.43|ENSG00000188827|chr16:3589397-3589397|G/-|frameshift_variant;nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4 SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 493.2763671875 2 492.717079 983.419604 0.10013 4.9335E-05 -3.904 -0.0019235 -3.8038 -0.0018742 492.7144394479205 138.43 0.24399 133.51 133.28 133.53 -4.9216 8 6 2 0 0 0 0.49746 1 26582 26582 2.6312 1.669 1 891420 7515 7201 4654 4658 7779 7779 -0.07276880483800596 DQEPSQSPP 9 Unmodified _DQEPSQSPP_ 0 0 0 SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant;SLX4|p.P1414Hfs*36|1|0.43|ENSG00000188827|chr16:3589397-3589397|G/-|frameshift_variant;nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4 SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 492.717079 983.419604 0.19036 9.3795E-05 -4.4131 -0.0021744 -4.2227 -0.0020806 492.714101553232 133.44 0.49072 133.44 133.24 133.73 0 -0.035588 -0.00027473 NaN 2.6312 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2091900 7516 7201 4654 4658 -0.07276880483800596 DQEVKYAK 8 Unmodified _DQEVKYAK_ 0 0 0 tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1 tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1 tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27069091796875 2 490.756007 979.497461 0.19387 9.5144E-05 -0.072203 -3.5434E-05 0.12167 5.971E-05 490.7560055736085 22.126 0.31205 22.126 21.981 22.293 0 15 8 2 0 0 0 0.64118 1 3710 3710 24.021 3.5669 1 1462000 7517 26386 4655 4659 7780 7780 0.006891771722280282 DQEVNELVEE 10 Unmodified _DQEVNELVEE_ 0 0 0 ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;ENST00000506603.5_1_5:79034050-79057839:+|nuORF ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2938232421875 2 602.272415 1202.53028 NaN NaN NaN NaN NaN NaN NaN 156.94 1 152.15 151.65 152.65 -4.7885 0 0 0 2.8426 1 31210 31210 10.151 8.9357 1 7518 5532 4656 4660 7781 7781 -0.0628870528621519 DQEWSRNF 8 Unmodified _DQEWSRNF_ 0 0 0 DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.F2761Lfs*20|1|0.09|ENSG00000187240|chr11:103203742-103203742|T/-|frameshift_variant;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1 DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.26123046875 2 541.238513 1080.46247 NaN NaN NaN NaN NaN NaN NaN 130.4 1 125.57 125.07 126.07 -4.8355 0 0 0 0.21486 1 25038 25038 7.9102 0.62092 1 7519 900 4657 4661 7782 7782 -0.07454065635715779 DQFREKPF 8 Unmodified _DQFREKPF_ 0 0 0 REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2814331054688 2 533.769448 1065.52434 0.3211 0.0001714 -0.013103 -6.9941E-06 0.308 0.0001644 533.7693932236862 112.11 0.3461 107.58 107.49 107.83 -4.5259 11 9 2 0 0 0 0.95515 1 21541 21541 10.824 3.5347 1 683710 + 7520 19228 4658 4662 7783 7783 -0.005797142165647529 DQGAHIIVTPE 11 Unmodified _DQGAHIIVTPE_ 0 0 0 ENSG00000112299|ENST00000367928|VNN1;VNN1|p.P154Lfs*44|1|0.28|ENSG00000112299|chr6:132694063-132694063|G/-|frameshift_variant ENSG00000112299|ENST00000367928|VNN1 ENSG00000112299|ENST00000367928|VNN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2767944335938 2 590.303852 1178.59315 NaN NaN NaN NaN NaN NaN NaN 136.84 1 132.2 131.7 132.7 -4.6399 0 0 0 0.23324 1 26999 26999 5.7319 0.43497 1 7521 2685 4659 4663 7784 7784 0.010999052924717034 DQGENEFNYE 10 Unmodified _DQGENEFNYE_ 0 0 0 REV__ENST00000443317.1_1_20:32802260-32803361:-|nuORF REV__ENST00000443317.1_1_20:32802260-32803361:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.765625 2 622.738739 1243.46293 NaN NaN NaN NaN NaN NaN NaN 128.24 1 123.62 123.12 124.12 -4.6292 0 0 0 0.22588 1 25288 25288 10.8 0.72558 1 + 7522 21729 4660 4664 7785 7785 -0.14906735497197587 DQGHFPSQGI 10 Unmodified _DQGHFPSQGI_ 0 0 0 REV__nc|ENSG00000065675|Q04759-3|PRKCQ REV__nc|ENSG00000065675|Q04759-3|PRKCQ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7716674804688 2 543.254163 1084.49377 0.67137 0.00036473 1.013 0.00055033 1.6844 0.00091506 543.254648917347 30.617 0.45929 28.5 28.224 28.683 -2.1167 21 12 2 0 0 0 0.67319 1 5517 5517 13.906 3.0821 1 763730 + 7523 14192 4661 4665 7786 7786 -0.045094926016190584 DQGHFPSQGI 10 Unmodified _DQGHFPSQGI_ 0 0 0 REV__nc|ENSG00000065675|Q04759-3|PRKCQ REV__nc|ENSG00000065675|Q04759-3|PRKCQ MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.254163 1084.49377 0.62273 0.0003383 1.4248 0.00077402 2.0475 0.0011123 543.2549556800486 30.559 0.38449 28.484 28.257 28.641 -2.0743 -0.0077582 0.00029553 NaN 13.906 20 10 2 NaN NaN NaN NaN 0 NaN NaN 0 537550 + 7524 14192 4661 4665 -0.045094926016190584 DQGMCGSCWAF 11 Unmodified _DQGMCGSCWAF_ 0 0 0 ENST00000529199.1_1_11:66333209-66333615:-|nuORF;ENST00000527141.5_1_11:66331945-66334941:-|nuORF;ENSG00000174080|ENST00000310325|CTSF ENST00000529199.1_1_11:66333209-66333615:-|nuORF ENST00000529199.1_1_11:66333209-66333615:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2818603515625 2 602.714644 1203.41474 NaN NaN NaN NaN NaN NaN NaN 50.931 1 47.879 47.379 48.379 -3.0517 0 0 0 0.23018 1 9371 9371 8.1555 0.8663 1 7525 6326 4662 4666 7787 7787 -0.17883547214091777 DQGRMGPI 8 Unmodified _DQGRMGPI_ 0 0 0 REV__ENST00000573937.5_1_17:1707859-1733034:-|nuORF REV__ENST00000573937.5_1_17:1707859-1733034:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2160339355469 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 86.215 1 82.486 81.986 82.986 -3.7289 0 0 0 0.21452 1 16485 16485 13.508 4.1604 1 + 7526 23189 4663 4667 7788 7788 -0.023875877025943737 DQGSSSQPN 9 Unmodified _DQGSSSQPN_ 0 0 0 nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP nc|ENSG00000123485|Q8NCD3-3|HJURP nc|ENSG00000123485|Q8NCD3-3|HJURP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2317199707031 2 460.191228 918.367903 -0.050002 -2.3011E-05 -0.70467 -0.00032428 -0.75467 -0.00034729 460.1908911095613 53.176 0.81892 50.08 49.76 50.579 -3.0954 38 23 2 0 0 0 0.82765 1 9826 9826 9.3831 4.8543 1 1471000 7527 3271 4664 4668 7789 7789 -0.09454624177703863 DQGSSSQPN 9 Unmodified _DQGSSSQPN_ 0 0 0 nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP nc|ENSG00000123485|Q8NCD3-3|HJURP nc|ENSG00000123485|Q8NCD3-3|HJURP MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.191228 918.367903 0.42042 0.00019348 -1.6767 -0.00077158 -1.2562 -0.0005781 460.1903338878478 50.142 0.8883 50.142 49.753 50.641 0 0.0307 -0.00052835 NaN 9.3831 34 25 2 NaN NaN NaN NaN 0 NaN NaN 0 819340 7528 3271 4664 4668 -0.09454624177703863 DQHDPVRL 8 Unmodified _DQHDPVRL_ 0 0 0 REV__GALNT2|p.N516Mfs*16|1|0.24|ENSG00000143641|chr1:230274548-230274548|A/-|frameshift_variant REV__GALNT2|p.N516Mfs*16|1|0.24|ENSG00000143641|chr1:230274548-230274548|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2757568359375 2 490.251423 978.488293 -0.02451 -1.2016E-05 -1.6332 -0.00080069 -1.6577 -0.00081271 490.25050953538397 75.911 0.44424 72.277 72.1 72.544 -3.6337 16 12 2 0 0 0 0.93477 1 14401 14401 18.135 5.6034 1 1447700 + 7529 16742 4665 4669 7790 7790 -0.0018117139344440147 DQHHIHFLLT 10 Unmodified _DQHHIHFLLT_ 0 0 0 REV__ENST00000281881.7_1_1:176905297-177133812:-|nuORF REV__ENST00000281881.7_1_1:176905297-177133812:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.75634765625 2 630.827829 1259.64111 NaN NaN NaN NaN NaN NaN NaN 80.119 1 76.314 75.814 76.814 -3.8048 0 0 0 2.8426 1 15201 15201 0.043787 0 1 + 7530 13134 4666 4670 7791 7791 0.02167024003165352 DQHNLLTEL 9 Unmodified _DQHNLLTEL_ 0 0 0 REV__ENSG00000162598|ENST00000371201|C1orf87 REV__ENSG00000162598|ENST00000371201|C1orf87 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2734985351562 2 541.77747 1081.54039 0.48925 0.00026506 -1.8317 -0.0009924 -1.3425 -0.00072733 542.2779996283134 120.47 0.84105 115.95 115.47 116.31 -4.5221 53 23 3 0 0 0 0.32967 1 23662 23662 4.7159 3.5011 1 2911200 + 7531 17507 4667 4671 7792 7792 0.0028794722966267727 DQHQYRFFFFF 11 Unmodified _DQHQYRFFFFF_ 0 0 0 REV__ENST00000555275.5_1_14:58740703-58758361:-|nuORF REV__ENST00000555275.5_1_14:58740703-58758361:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 791.3676147460938 2 791.367318 1580.72008 NaN NaN NaN NaN NaN NaN NaN 54.702 1 51.818 51.318 52.318 -2.8837 0 0 0 0.23698 1 10448 10448 1.1933 0 1 + 7532 22982 4668 4672 7793 7793 -0.04704748762583222 DQILVAVKCY 10 Unmodified _DQILVAVKCY_ 0 0 0 REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.311279296875 2 576.310092 1150.60563 NaN NaN NaN NaN NaN NaN NaN 135.85 1 130.95 130.45 131.45 -4.8951 0 0 0 0.22579 1 26099 26099 14.405 3.6059 1 + 7533 13643 4669 4673 7794 7794 0.03635225431139588 DQIQYTKLS 9 Unmodified _DQIQYTKLS_ 0 0 0 GJC1|p.E303K|1|0.38|ENSG00000182963|chr17:44804911-44804911|C/T|missense_variant GJC1|p.E303K|1|0.38|ENSG00000182963|chr17:44804911-44804911|C/T|missense_variant GJC1|p.E303K|1|0.38|ENSG00000182963|chr17:44804911-44804911|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7926635742188 2 548.287671 1094.56079 0.50397 0.00027632 -1.0071 -0.00055217 -0.50312 -0.00027586 548.2869258623333 40.881 0.31463 40.881 40.709 41.023 0 10 8 2 0 0 0 0.79204 1 7642 7642 7.2892 5.8073 1 1748800 7534 11850 4670 4674 7795 7795 0.017291178894765835 DQISNIKY 8 Unmodified _DQISNIKY_ 0 0 0 nc|ENSG00000002834|Q14847-3|LASP1;ENSG00000002834|ENST00000318008|LASP1;nc|ENSG00000002834|Q14847-2|LASP1 nc|ENSG00000002834|Q14847-3|LASP1 nc|ENSG00000002834|Q14847-3|LASP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25433349609375 2 490.756007 979.497461 0.0051084 2.507E-06 0.054409 2.6702E-05 0.059518 2.9209E-05 490.7560012015716 73.521 0.68106 70.211 69.707 70.388 -3.3107 35 18 2 0 0 0 0.24385 1 14278 14278 49.933 0 1 3693600 7535 965 4671 4675 7796 7796 0.006891771722166595 DQITKMKV 8 Unmodified _DQITKMKV_ 0 0 0 PHIP|p.K421Q|1|0.3|ENSG00000146247|chr6:79015758-79015758|T/G|missense_variant PHIP|p.K421Q|1|0.3|ENSG00000146247|chr6:79015758-79015758|T/G|missense_variant PHIP|p.K421Q|1|0.3|ENSG00000146247|chr6:79015758-79015758|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77197265625 2 481.770603 961.526652 NaN NaN NaN NaN NaN NaN NaN 149.01 1 143.85 143.35 144.35 -5.1557 0 0 0 0.21486 1 28858 28858 9.3831 0.78985 1 7536 12784 4672 4676 7797 7797 0.04434998196882134 DQIWYAKF 8 Unmodified _DQIWYAKF_ 0 0 0 REV__nc|ENSG00000254685|O14772-3|FPGT REV__nc|ENSG00000254685|O14772-3|FPGT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.1039123535156 3 357.515037 1069.52328 0.084553 3.0229E-05 -0.8456 -0.00030231 -0.76105 -0.00027209 357.51461442358914 46.519 0.24337 46.519 46.418 46.661 0 8 6 2 0 0 0 1.0248 1 8765 8765 1.4819 1.4819 1 286060 + 7537 24295 4673 4677 7798 7798 -0.008699285854845584 DQKECVDKE 9 Unmodified _DQKECVDKE_ 0 0 0 REV__nc|ENSG00000018189|Q7L099|RUFY3 REV__nc|ENSG00000018189|Q7L099|RUFY3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7706909179688 2 547.245146 1092.47574 0.20732 0.00011346 0.68697 0.00037594 0.89429 0.0004894 547.2454058259492 81.223 0.58392 77.666 77.341 77.925 -3.557 40 16 3 0 0 0 0.66788 1 15908 15908 22.736 2.3217 1 6982800 + 7538 13969 4674 4678 7799 7799 -0.06679995638637592 DQKECVDKE 9 Unmodified _DQKECVDKE_ 0 0 0 REV__nc|ENSG00000018189|Q7L099|RUFY3 REV__nc|ENSG00000018189|Q7L099|RUFY3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7931518554688 2 547.245146 1092.47574 -0.11647 -6.3739E-05 1.0386 0.00056837 0.92213 0.00050463 547.2456628355511 81.228 0.58449 77.54 77.247 77.831 -3.6879 40 16 3 0 0 0 0.74858 1 15528 15528 12.241 0 1 8246500 + 7539 13969 4674 4678 7800 7800 -0.06679995638637592 DQKIFTDL 8 Unmodified _DQKIFTDL_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2756042480469 2 490.258382 978.502212 -0.010564 -5.179E-06 0.031898 1.5638E-05 0.021334 1.0459E-05 490.25857035332103 62.706 0.48831 59.467 59.173 59.661 -3.2395 21 13 3 0 0 0 0.56049 1 11750 11750 24.674 0.65332 1 1353700 7540 2449 4675 4679 7801 7801 0.012100613149868877 DQLAEAVSK 9 Unmodified _DQLAEAVSK_ 0 0 0 REV__ENSG00000168016|ENST00000645898|TRANK1 REV__ENSG00000168016|ENST00000645898|TRANK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25506591796875 2 480.753464 959.492375 -0.12042 -5.7895E-05 0.1536 7.3845E-05 0.033177 1.595E-05 480.7534521981586 50.706 0.55665 47.654 47.331 47.888 -3.0517 41 15 3 0 0 0 0.46882 1 9366 9366 21.537 2.28 1 3165200 + 7541 17989 4676 4680 7802 7802 0.011008733096218748 DQLAHFKG 8 Unmodified _DQLAHFKG_ 0 0 0 TSHZ1|p.K249Rfs*24|1|0.31|ENSG00000179981|chr18:75286152-75286153|AA/-|frameshift_variant;TSHZ1|p.C363Afs*14|2|0.34|ENSG00000179981|chr18:75286488-75286488|C/-|frameshift_variant;TSHZ1|p.K450Efs*47|1|0.13|ENSG00000179981|chr18:75286754-75286755|TA/-|frameshift_variant;nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;TSHZ1|p.A1028Pfs*41|1|0.22|ENSG00000179981|chr18:75288485-75288485|G/-|frameshift_variant;ENSG00000179981|ENST00000580243|TSHZ1 TSHZ1|p.K249Rfs*24|1|0.31|ENSG00000179981|chr18:75286152-75286153|AA/-|frameshift_variant TSHZ1|p.K249Rfs*24|1|0.31|ENSG00000179981|chr18:75286152-75286153|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2385559082031 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 61.916 1 58.677 58.177 59.177 -3.2395 0 0 0 0.21486 1 11599 11599 12.532 0 1 7542 6652 4677 4681 7803 7803 0.0003634506618936939 DQLAHFKG 8 Unmodified _DQLAHFKG_ 0 0 0 TSHZ1|p.K249Rfs*24|1|0.31|ENSG00000179981|chr18:75286152-75286153|AA/-|frameshift_variant;TSHZ1|p.C363Afs*14|2|0.34|ENSG00000179981|chr18:75286488-75286488|C/-|frameshift_variant;TSHZ1|p.K450Efs*47|1|0.13|ENSG00000179981|chr18:75286754-75286755|TA/-|frameshift_variant;nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;TSHZ1|p.A1028Pfs*41|1|0.22|ENSG00000179981|chr18:75288485-75288485|G/-|frameshift_variant;ENSG00000179981|ENST00000580243|TSHZ1 TSHZ1|p.K249Rfs*24|1|0.31|ENSG00000179981|chr18:75286152-75286153|AA/-|frameshift_variant TSHZ1|p.K249Rfs*24|1|0.31|ENSG00000179981|chr18:75286152-75286153|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2377014160156 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 62.125 1 58.885 58.385 59.385 -3.2395 0 0 0 0.21486 1 11642 11642 12.532 0 1 7543 6652 4677 4681 7804 7804 0.0003634506618936939 DQLAPPLIEA 10 Unmodified _DQLAPPLIEA_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2 REV__ENSG00000054654|ENST00000555002|SYNE2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2681884765625 2 533.792589 1065.57063 -0.15552 -8.3014E-05 0.74561 0.000398 0.59009 0.00031499 533.7930155127807 40.382 0.56758 37.747 37.299 37.866 -2.6348 30 15 3 0 0 0 0.86856 1 7486 7486 11.495 0 1 5889100 + 7544 14106 4678 4682 7805 7805 0.04046305894848956 DQLCGPKL 8 Unmodified _DQLCGPKL_ 0 0 0 REV__nc|ENSG00000172717|Q8N9W8-2|GARIN2 REV__nc|ENSG00000172717|Q8N9W8-2|GARIN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2272033691406 2 437.228571 872.442588 NaN NaN NaN NaN NaN NaN NaN 85.794 1 81.844 81.344 82.344 -3.9503 0 0 0 0.21486 1 16321 16321 4.3292 0 1 + 7545 18302 4679 4683 7806 7806 0.0012646709996033678 DQLDKSVQL 9 Unmodified _DQLDKSVQL_ 0 0 0 nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM;NRCAM|p.I903Dfs*20|1|0.06|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant nc|ENSG00000091129|Q92823-3|NRCAM nc|ENSG00000091129|Q92823-3|NRCAM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6943359375 2 523.279846 1044.54514 -0.022495 -1.1771E-05 -0.52553 -0.000275 -0.54802 -0.00028677 523.2795755337826 49.682 0.35123 46.675 46.488 46.839 -3.0068 15 9 2 0 0 0 0.77644 1 9121 9121 15.248 7.093 1 1131300 7546 1804 4680 4684 7807 7807 0.02464831372435583 DQLDKSVQL 9 Unmodified _DQLDKSVQL_ 0 0 0 nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM;NRCAM|p.I903Dfs*20|1|0.06|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant nc|ENSG00000091129|Q92823-3|NRCAM nc|ENSG00000091129|Q92823-3|NRCAM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.279846 1044.54514 -0.58127 -0.00030417 0.59282 0.00031021 0.01155 6.0439E-06 523.2802452327995 49.731 0.31976 46.732 46.513 46.833 -2.999 0.046737 0.00076148 NaN 15.248 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2034100 7547 1804 4680 4684 0.02464831372435583 DQLEALNL 8 Unmodified _DQLEALNL_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2388000488281 2 458.242732 914.470912 0.21227 9.7273E-05 -0.080012 -3.6665E-05 0.13226 6.0608E-05 458.2426755954393 86.254 1.1587 86.254 85.824 86.982 0 47 32 2 0 0 0 0.68128 1 16783 16783 16.942 0 1 1511700 + 7548 15894 4681 4685 7808 7808 0.010254882808908405 DQLEYDQR 8 Unmodified _DQLEYDQR_ 0 0 0 REV__nc|ENSG00000157388|Q01668-3|CACNA1D REV__nc|ENSG00000157388|Q01668-3|CACNA1D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2719116210938 2 533.743628 1065.4727 0.37576 0.00020056 -0.29496 -0.00015743 0.0808 4.3127E-05 533.7435017209883 39.597 0.39042 37.155 36.961 37.352 -2.4419 14 10 2 0 0 0 0.94038 1 7104 7104 26.268 5.8536 1 581660 + 7549 17296 4682 4686 7809 7809 -0.0574150270113023 DQLKLADVLRT 11 Unmodified _DQLKLADVLRT_ 0 0 0 REV__nc|ENSG00000141338|O94911-1|ABCA8 REV__nc|ENSG00000141338|O94911-1|ABCA8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2530212402344 3 424.58211 1270.7245 0.4081 0.00017327 -0.1825 -7.7485E-05 0.2256 9.5787E-05 424.58192318841674 108.02 0.66934 103.88 103.52 104.19 -4.135 45 18 3 0 0 0 0.77537 1 20728 20728 6.6235 0 1 3005400 + 7550 16621 4683 4687 7810 7810 0.09996715660349764 DQLLLLQLL 9 Unmodified _DQLLLLQLL_ 0 0 0 REV__ENST00000484016.1_1_12:56226082-56226935:+|nuORF REV__ENST00000484016.1_1_12:56226082-56226935:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5624694824219 3 356.893625 1067.65905 -0.19067 -6.8048E-05 -0.25075 -8.949E-05 -0.44142 -0.00015754 356.89354872324566 127.42 0.62788 122.81 122.4 123.03 -4.6172 26 17 2 0 0 0 0.74567 1 25145 25145 4.1895 1.4543 1 1407300 + 7551 22208 4684 4688 7811 7811 0.1279234620533316 DQLLRTLDI 9 Unmodified _DQLLRTLDI_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ADAM33|p.A455Pfs*14|1|0.31|ENSG00000149451|chr20:3672575-3672575|C/-|frameshift_variant nc|ENSG00000149451|Q9BZ11-2|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.778076171875 2 543.811313 1085.60807 0.25489 0.00013861 -0.0098281 -5.3446E-06 0.24506 0.00013327 543.8112684268742 129.87 0.78322 125.1 124.71 125.5 -4.7725 52 21 3 0 0 0 0.16619 1 25045 25045 41.84 0 1 8025900 7552 4792 4685 4689 7812 7812 0.06869397160471635 DQLLYRPG 8 Unmodified _DQLLYRPG_ 0 0 0 REV__TREML2|p.R203*|1|0.03|ENSG00000112195|chr6:41194603-41194604|-/CA|frameshift_variant REV__TREML2|p.R203*|1|0.03|ENSG00000112195|chr6:41194603-41194604|-/CA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2541809082031 2 481.258717 960.50288 NaN NaN NaN NaN NaN NaN NaN 45.616 1 42.749 42.249 43.249 -2.8666 0 0 0 0.21486 1 8283 8283 9.3474 0 1 + 7553 15284 4686 4690 7813 7813 0.02104900754704886 DQLPSLGGVA 10 Unmodified _DQLPSLGGVA_ 0 0 0 REV__FCAMR|p.R66Kfs*103|3|0.26|ENSG00000162897|chr1:206965831-206965832|-/T|frameshift_variant REV__FCAMR|p.R66Kfs*103|3|0.26|ENSG00000162897|chr1:206965831-206965832|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7376708984375 2 478.756007 955.497461 0.21523 0.00010304 -1.7342 -0.00083027 -1.519 -0.00072723 478.7559127483395 44.377 1.9484 44.377 43.569 45.518 0 109 55 3 0 0 0 0.21204 1 8307 8307 72.968 16.791 1 19357000 + 7554 23530 4687 4691 7814 7814 0.01793177172248761 DQLPSLGGVA 10 Unmodified _DQLPSLGGVA_ 0 0 0 REV__FCAMR|p.R66Kfs*103|3|0.26|ENSG00000162897|chr1:206965831-206965832|-/T|frameshift_variant REV__FCAMR|p.R66Kfs*103|3|0.26|ENSG00000162897|chr1:206965831-206965832|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7279357910156 2 478.756007 955.497461 -0.044274 -2.1197E-05 -1.3427 -0.00064284 -1.387 -0.00066404 478.7560403631429 47.23 1.782 44.361 43.806 45.588 -2.869 106 50 3 0 0 0 0.21204 1 8903 8903 72.968 16.791 1 20448000 + 7555 23530 4687 4691 7815 7815 0.01793177172248761 DQLPSLGGVA 10 Unmodified _DQLPSLGGVA_ 0 0 0 REV__FCAMR|p.R66Kfs*103|3|0.26|ENSG00000162897|chr1:206965831-206965832|-/T|frameshift_variant REV__FCAMR|p.R66Kfs*103|3|0.26|ENSG00000162897|chr1:206965831-206965832|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7398681640625 2 478.756007 955.497461 0.00077364 3.7039E-07 -1.4895 -0.00071312 -1.4887 -0.00071275 478.756019953004 47.302 2.2317 44.36 43.441 45.673 -2.9421 117 63 3 0 0 0 0.26296 1 8604 8604 63.961 16.212 1 20037000 + 7556 23530 4687 4691 7816 7816 0.01793177172248761 DQLQGLSL 8 Unmodified _DQLQGLSL_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1;ENST00000549154.1_1_12:53682884-53683443:+|nuORF ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2359619140625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 60.644 1 60.644 60.144 61.144 0 0 0 0 0.18417 1 11631 11631 30.225 5.5509 1 7557 3928 4688 4692 7817 7817 0.019015056264720442 DQLQGLSL 8 Unmodified _DQLQGLSL_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1;ENST00000549154.1_1_12:53682884-53683443:+|nuORF ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2356262207031 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 60.864 1 60.864 60.364 61.364 0 0 0 0 0.2074 1 11675 11675 19.439 1.304 1 7558 3928 4688 4692 7818 7818 0.019015056264720442 DQLRCAPL 8 Unmodified _DQLRCAPL_ 0 0 0 REV__nc|ENSG00000008441|Q14938-5|NFIX REV__nc|ENSG00000008441|Q14938-5|NFIX MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22296142578125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 59.007 1 59.007 58.507 59.507 0 0 0 0 0.20896 1 11302 11302 18.135 0 1 + 7559 23927 4689 4693 7819 7819 0.0037327184851392303 DQLRCAPL 8 Unmodified _DQLRCAPL_ 0 0 0 REV__nc|ENSG00000008441|Q14938-5|NFIX REV__nc|ENSG00000008441|Q14938-5|NFIX MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23876953125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 59.112 1 59.112 58.612 59.612 0 0 0 0 0.21486 1 11322 11322 12.532 0 1 + 7560 23927 4689 4693 7820 7820 0.0037327184851392303 DQLSKTNLY 9 Unmodified _DQLSKTNLY_ 0 0 0 ENST00000477486.1_1_2:161223725-161223878:-|nuORF;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1;ENSG00000076067|ENST00000262031|RBMS2 ENST00000477486.1_1_2:161223725-161223878:-|nuORF ENST00000477486.1_1_2:161223725-161223878:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2791748046875 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 88.145 1 84.15 83.65 84.65 -3.9953 0 0 0 0.16777 1 16789 16789 2.8827 0.25143 1 7561 1534 4690 4694 7821 7821 0.008088313724329055 DQLSRETL 8 Unmodified _DQLSRETL_ 0 0 0 REV__SEMA5B|p.Q905Rfs*147|1|0.47|ENSG00000082684|chr3:122912855-122912855|G/-|frameshift_variant REV__SEMA5B|p.Q905Rfs*147|1|0.47|ENSG00000082684|chr3:122912855-122912855|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25054931640625 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 84.324 1 84.324 83.824 84.824 0 0 0 0 0.21404 1 16443 16443 13.906 0 1 + 7562 14442 4691 4695 7822 7822 0.005799891668516466 DQLTVPRCY 9 Unmodified _DQLTVPRCY_ 0 0 0 REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.775390625 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 45.655 1 42.788 42.288 43.288 -2.8666 0 0 0 0.21469 1 8290 8290 19.257 4.0085 1 + 7563 23008 4692 4696 7823 7823 -0.020390912968423436 DQLVMVNRL 9 Unmodified _DQLVMVNRL_ 0 0 0 REV__nc|ENSG00000170469|Q86W54-2|SPATA24 REV__nc|ENSG00000170469|Q86W54-2|SPATA24 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7705688476562 2 544.300059 1086.58556 0.29447 0.00016028 -4.4761 -0.0024364 -4.1817 -0.0022761 544.2970735147273 145.55 0.28441 140.88 140.75 141.04 -4.6694 8 7 2 0 0 0 0.73268 1 28877 28877 18.146 0 1 2579100 + 7564 18165 4693 4697 7824 7824 0.045734744911896996 DQLYKAESQY 10 Unmodified _DQLYKAESQY_ 0 0 0 REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7670288085938 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 94.944 1 94.944 94.444 95.444 0 0 0 0 0.22566 1 18595 18595 16.149 2.2431 1 + 7565 21699 4694 4698 7825 7825 -0.039961048070381366 DQLYKAESQY 10 Unmodified _DQLYKAESQY_ 0 0 0 REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7593383789062 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 95.176 1 95.176 94.676 95.676 0 0 0 0 0.22552 1 18644 18644 18.146 7.3224 1 + 7566 21699 4694 4698 7826 7826 -0.039961048070381366 DQLYKAESQY 10 Unmodified _DQLYKAESQY_ 0 0 0 REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7803344726562 2 622.793318 1243.57208 0.99683 0.00062082 -0.84478 -0.00052612 0.15205 9.4697E-05 622.79310898057 99.499 0.38227 95.367 95.199 95.581 -4.1326 13 10 2 0 0 0 0.5575 2 19555 19555;19571 21.537 9.0054 1 1436800 + 7567 21699 4694 4698 7827;7828 7827 -0.039961048070381366 DQLYKAESQY 10 Unmodified _DQLYKAESQY_ 0 0 0 REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.781982421875 2 622.793318 1243.57208 0.48511 0.00030212 -0.94043 -0.00058569 -0.45532 -0.00028357 622.7930642978843 99.775 0.43355 95.478 95.278 95.711 -4.297 17 12 3 0 0 0 0.65108 1 19115 19115 16.149 0 1 1549400 + 7568 21699 4694 4698 7829 7829 -0.039961048070381366 DQLYKAESQY 10 Unmodified _DQLYKAESQY_ 0 0 0 REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 622.793318 1243.57208 0.99683 0.00062082 -0.84478 -0.00052612 0.15205 9.4697E-05 622.79310898057 99.499 0.38227 95.367 95.199 95.581 -4.1326 -0.079922 -0.00010945 NaN 21.537 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1436800 + 7569 21699 4694 4698 -0.039961048070381366 DQLYKAESQY 10 Unmodified _DQLYKAESQY_ 0 0 0 REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 622.793318 1243.57208 0.48511 0.00030212 -0.94043 -0.00058569 -0.45532 -0.00028357 622.7930642978843 99.775 0.43355 95.478 95.278 95.711 -4.297 0.031673 -0.00022858 NaN 21.537 17 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1549400 + 7570 21699 4694 4698 -0.039961048070381366 DQLYKAESQY 10 Unmodified _DQLYKAESQY_ 0 0 0 REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF REV__ENST00000439908.1_1_X:18883921-18884101:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 622.793318 1243.57208 0.4117 0.0002564 -0.53816 -0.00033516 -0.12646 -7.876E-05 622.793090218563 99.451 0.62549 95.495 95.206 95.832 -3.9564 0.048248 0.00027248 NaN 21.537 20 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1704600 + 7571 21699 4694 4698 -0.039961048070381366 DQMERWVM 8 Unmodified _DQMERWVM_ 0 0 0 REV__nc|ENSG00000185880|Q86WT6-4|TRIM69 REV__nc|ENSG00000185880|Q86WT6-4|TRIM69 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7717895507812 2 547.741519 1093.46849 NaN NaN NaN NaN NaN NaN NaN 169.06 1 164.18 163.68 164.68 -4.873 0 0 0 0.22665 1 33374 33374 0.68139 0 1 + 7572 18995 4695 4699 7830 7830 -0.07451006720043551 DQMWMCYF 8 Unmodified _DQMWMCYF_ 0 0 0 REV__ENST00000492638.1_1_21:45209510-45212627:+|nuORF REV__ENST00000492638.1_1_21:45209510-45212627:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21630859375 3 375.139708 1122.39729 -0.77386 -0.00029031 0.58706 0.00022023 -0.1868 -7.0077E-05 375.4741128513144 47.855 0.17219 44.905 44.844 45.016 -2.9499 6 4 2 0 0 0 0.89848 1 8763 8763 0.62683 0.21856 1 915790 + 7573 17405 4696 4700 7831 7831 -0.15900842749078947 DQNFAISL 8 Unmodified _DQNFAISL_ 0 0 0 REV__nc|ENSG00000132003|Q9H7M6|ZSWIM4 REV__nc|ENSG00000132003|Q9H7M6|ZSWIM4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.76837158203125 2 454.229625 906.444697 0.2548 0.00011574 -0.19407 -8.8153E-05 0.06073 2.7585E-05 454.229553617696 111.4 0.66078 111.4 111.1 111.76 0 29 18 2 0 0 0 0.50387 1 21888 21888 20.454 4.6064 1 1763200 + 7574 16094 4697 4701 7832 7832 -0.012267808905676247 DQNFAISL 8 Unmodified _DQNFAISL_ 0 0 0 REV__nc|ENSG00000132003|Q9H7M6|ZSWIM4 REV__nc|ENSG00000132003|Q9H7M6|ZSWIM4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.750244140625 2 454.229625 906.444697 0.2243 0.00010189 -0.20377 -9.2559E-05 0.020532 9.3262E-06 454.2295719292563 116.06 0.64923 111.48 111.12 111.77 -4.5815 31 18 2 0 0 0 0.38287 1 22266 22266 30.637 0 1 2162700 + 7575 16094 4697 4701 7833 7833 -0.012267808905676247 DQNFAISL 8 Unmodified _DQNFAISL_ 0 0 0 REV__nc|ENSG00000132003|Q9H7M6|ZSWIM4 REV__nc|ENSG00000132003|Q9H7M6|ZSWIM4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7505798339844 2 454.229625 906.444697 0.46498 0.00021121 -0.47268 -0.00021471 -0.0077026 -3.4987E-06 454.2293830286039 115.86 0.84245 111.5 111.04 111.88 -4.3585 37 23 2 0 0 0 0.64118 1 22262 22262 24.021 3.5669 1 1472800 + 7576 16094 4697 4701 7834 7834 -0.012267808905676247 DQNGVVGPH 9 Unmodified _DQNGVVGPH_ 0 0 0 nc|ENSG00000110074|Q96CU9-3|FOXRED1;ENSG00000110074|ENST00000263578|FOXRED1;ENST00000532590.1_1_11:126146908-126147581:+|nuORF;nc|ENSG00000110074|Q96CU9-2|FOXRED1 nc|ENSG00000110074|Q96CU9-3|FOXRED1 nc|ENSG00000110074|Q96CU9-3|FOXRED1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5412902832031 2 461.722498 921.430444 NaN NaN NaN NaN NaN NaN NaN 28.627 1 26.871 26.371 27.371 -1.7552 0 0 0 0.23508 1 4841 4841 7.2892 2.0586 1 7577 2559 4698 4702 7835 7835 -0.03341433318860254 DQNIEEVVDFY 11 Unmodified _DQNIEEVVDFY_ 0 0 0 REV__AP3M1|p.D188Nfs*31|1|0.11|ENSG00000185009|chr10:74134037-74134052|TATAATTGCGTCTATT/-|frameshift_variant REV__AP3M1|p.D188Nfs*31|1|0.11|ENSG00000185009|chr10:74134037-74134052|TATAATTGCGTCTATT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23419189453125 3 457.541869 1369.60378 0.28406 0.00012997 0.9107 0.00041668 1.1948 0.00054665 457.54226145606646 32.03 0.48499 32.03 31.776 32.261 0 33 13 3 0 0 0 0.69297 1 5814 5814 12.228 4.7505 1 5890800 + 7578 13074 4699 4703 7836 7836 -0.0662415684375901 DQNIEEVVDFY 11 Unmodified _DQNIEEVVDFY_ 0 0 0 REV__AP3M1|p.D188Nfs*31|1|0.11|ENSG00000185009|chr10:74134037-74134052|TATAATTGCGTCTATT/-|frameshift_variant REV__AP3M1|p.D188Nfs*31|1|0.11|ENSG00000185009|chr10:74134037-74134052|TATAATTGCGTCTATT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2273864746094 3 457.541869 1369.60378 0.35116 0.00016067 0.83064 0.00038005 1.1818 0.00054072 457.5421895640952 34.452 0.52527 32.236 32.02 32.545 -2.2158 40 14 4 0 0 0 0.74408 1 6024 6024 8.7518 2.9684 1 3581700 + 7579 13074 4699 4703 7837 7837 -0.0662415684375901 DQNNVIENEE 10 Unmodified _DQNNVIENEE_ 0 0 0 ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-2|MIA2 ENSG00000150527|ENST00000640607|MIA2 ENSG00000150527|ENST00000640607|MIA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2861938476562 2 602.259839 1202.50512 NaN NaN NaN NaN NaN NaN NaN 130.92 1 126.15 125.65 126.65 -4.7725 0 0 0 0.22588 1 25201 25201 8.1555 0.24537 1 7580 4827 4700 4704 7838 7838 -0.08802760088769901 DQNNYHYL 8 Unmodified _DQNNYHYL_ 0 0 0 REV__TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant REV__TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2698364257812 2 533.733063 1065.45157 0.18513 9.881E-05 0.46509 0.00024823 0.65022 0.00034704 533.7329201166498 37.346 0.27822 37.346 37.16 37.438 0 11 7 2 0 0 0 1.0011 1 6885 6885 4.3292 0 1 361020 + 7581 16303 4701 4705 7839 7839 -0.07853468010011966 DQNQDLSH 8 Unmodified _DQNQDLSH_ 0 0 0 REV__SLC25A23|p.R91Q|1|0.41|ENSG00000125648|chr19:6458209-6458209|C/T|missense_variant REV__SLC25A23|p.R91Q|1|0.41|ENSG00000125648|chr19:6458209-6458209|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7440490722656 2 478.707045 955.399537 0.19194 9.1884E-05 1.4456 0.00069204 1.6376 0.00078392 478.7075703441788 34.273 0.3823 32.126 31.942 32.324 -2.1468 18 10 2 0 0 0 0.9455 1 5990 5990 11.64 0 1 1237600 + 7582 24631 4702 4706 7840 7840 -0.07994631423753162 DQPCRLAA 8 Unmodified _DQPCRLAA_ 0 0 0 REV__ENST00000488605.1_1_13:50096192-50101394:+|nuORF REV__ENST00000488605.1_1_13:50096192-50101394:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2296142578125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 76.201 1 76.201 75.701 76.701 0 0 0 0 0.2074 1 14808 14808 19.439 2.4967 1 + 7583 22276 4703 4707 7841 7841 -0.02387587702617111 DQPEENESP 9 Unmodified _DQPEENESP_ 0 0 0 nc|ENSG00000112782|Q9NZA1|CLIC5 nc|ENSG00000112782|Q9NZA1|CLIC5 nc|ENSG00000112782|Q9NZA1|CLIC5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2733154296875 2 522.709451 1043.40435 -0.58953 -0.00030815 0.89496 0.0004678 0.30543 0.00015965 522.711118287933 53.554 0.70536 50.466 50.178 50.883 -3.0876 44 17 4 0 0 0 0.81703 1 9855 9855 10.074 0 1 3231600 7584 12287 4704 4708 7842 7842 -0.11561792071665877 DQPHHQPP 8 Unmodified _DQPHHQPP_ 0 0 0 ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2 ENST00000528599.1_1_6:111894079-111913289:-|nuORF ENST00000528599.1_1_6:111894079-111913289:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7211608886719 2 478.222665 954.430778 0.1601 7.6563E-05 -1.7332 -0.00082886 -1.5731 -0.0007523 478.22208144304653 43.148 0.48509 43.148 42.809 43.295 0 17 13 2 0 0 0 0.9455 1 8097 8097 7.2892 0 1 656950 7585 1281 4705 4709 7843 7843 -0.048260135990062736 DQPQPPAGAP 10 Unmodified _DQPQPPAGAP_ 0 0 0 REV__ENSG00000140740|ENST00000268379|UQCRC2 REV__ENSG00000140740|ENST00000268379|UQCRC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2555236816406 2 489.237981 976.461409 0.52192 0.00025534 -0.67246 -0.00032899 -0.15054 -7.365E-05 489.237620043889 46.286 0.62625 46.286 45.898 46.525 0 35 17 3 0 0 0 0.63858 1 8738 8738 17.113 0 1 1620400 + 7586 16594 4706 4710 7844 7844 -0.027762800046275515 DQQAQVHQL 9 Unmodified _DQQAQVHQL_ 0 0 0 nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;TNRC6A|p.E1066Sfs*20|1|0.3|ENSG00000090905|chr16:24793488-24793488|G/-|frameshift_variant;ENST00000568903.5_1_16:24803023-24807335:+|nuORF nc|ENSG00000090905|Q8NDV7-2|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2645874023438 2 533.767437 1065.52032 0.12861 6.8648E-05 0.58801 0.00031386 0.71662 0.00038251 533.7672933746645 32.113 0.34826 32.113 31.913 32.261 0 14 9 2 0 0 0 0.81703 1 5822 5822 6.2058 0.47393 1 643210 7587 1795 4707 4711 7845 7845 -0.009818037103059396 DQQCYRRL 8 Unmodified _DQQCYRRL_ 0 0 0 REV__ENSG00000142233|ENST00000270235|NTN5 REV__ENSG00000142233|ENST00000270235|NTN5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2846069335938 2 541.264007 1080.51346 NaN NaN NaN NaN NaN NaN NaN 87.304 1 83.575 83.075 84.075 -3.7289 0 0 0 0.20896 1 16701 16701 18.135 3.2967 1 + 7588 16662 4708 4712 7846 7846 -0.0235743986252146 DQQPPMSL 8 Unmodified _DQQPPMSL_ 0 0 0 ENST00000471774.5_1_9:35813331-35813685:-|nuORF ENST00000471774.5_1_9:35813331-35813685:-|nuORF ENST00000471774.5_1_9:35813331-35813685:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2377624511719 2 458.21566 914.416767 0.039531 1.8113E-05 -0.5484 -0.00025128 -0.50887 -0.00023317 458.2155116644412 60.885 0.72976 57.516 57.099 57.829 -3.3694 31 20 2 0 0 0 0.71876 1 11271 11271 11.64 2.2572 1 1070100 7589 10215 4709 4713 7847 7847 -0.04386427142298999 DQQQFGKA 8 Unmodified _DQQQFGKA_ 0 0 0 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5337829589844 2 461.224874 920.435195 0.51009 0.00023527 -0.062202 -2.8689E-05 0.44789 0.00020658 461.22473881056703 29.742 0.55597 27.668 27.381 27.937 -2.0743 29 15 3 0 0 0 0.97173 1 5008 5008 12.532 3.1484 1 1508600 7590 4999 4710 4714 7848 7848 -0.02820549176090026 DQQQFGKA 8 Unmodified _DQQQFGKA_ 0 0 0 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.224874 920.435195 0.25504 0.00011763 -0.024862 -1.1467E-05 0.23018 0.00010617 461.224847154956 27.852 0.5484 27.852 27.631 28.18 0 0.15081 3.2409E-05 NaN 12.532 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1755200 7591 4999 4710 4714 -0.02820549176090026 DQQQFGKA 8 Unmodified _DQQQFGKA_ 0 0 0 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.224874 920.435195 0.49843 0.00022989 0.10575 4.8775E-05 0.60418 0.00027866 461.2247552550599 29.691 0.52693 27.575 27.35 27.877 -2.1167 -0.12685 0.00015289 NaN 12.532 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1683900 7592 4999 4710 4714 -0.02820549176090026 DQQQFGKA 8 Unmodified _DQQQFGKA_ 0 0 0 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.224874 920.435195 0.303 0.00013975 -0.32306 -0.000149 -0.020056 -9.2501E-06 461.2246179452314 29.604 0.49045 27.711 27.366 27.856 -1.8928 0.0098903 -0.00024266 NaN 12.532 24 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1521400 7593 4999 4710 4714 -0.02820549176090026 DQQQLANF 8 Unmodified _DQQQLANF_ 0 0 0 nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP;TRPC4AP|p.N270Mfs*8|1|0.04|ENSG00000100991|chr20:35044561-35044561|T/-|frameshift_variant nc|ENSG00000100991|Q8TEL6-2|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7690124511719 2 482.230156 962.445759 -0.074238 -3.58E-05 -0.63155 -0.00030455 -0.70579 -0.00034035 482.2297940993279 49.907 0.98033 47.026 46.415 47.395 -2.8811 36 27 2 0 0 0 0.89552 1 9490 9490 4.756 0 1 717150 7594 2029 4711 4715 7849 7849 -0.036965665216712296 DQQRQFCY 8 Unmodified _DQQRQFCY_ 0 0 0 REV__nc|ENSG00000196104|Q9BQ16-7|SPOCK3 REV__nc|ENSG00000196104|Q9BQ16-7|SPOCK3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7816162109375 2 544.234916 1086.45528 -0.012761 -6.945E-06 0.25298 0.00013768 0.24022 0.00013073 544.2349950008157 107.24 1.069 102.83 102.44 103.51 -4.4121 64 30 3 0 0 0 0.9455 1 20594 20594 16.942 3.4344 1 8260800 + 7595 19214 4712 4716 7850 7850 -0.08449121507783275 DQQRQFCY 8 Unmodified _DQQRQFCY_ 0 0 0 REV__nc|ENSG00000196104|Q9BQ16-7|SPOCK3 REV__nc|ENSG00000196104|Q9BQ16-7|SPOCK3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.792724609375 2 544.234916 1086.45528 0.79466 0.00043248 -1.079 -0.00058725 -0.28438 -0.00015477 544.2342828956049 106.97 0.89252 102.84 102.46 103.35 -4.135 66 25 3 0 0 0 0.9455 1 20613 20613 11.64 3.047 1 8786300 + 7596 19214 4712 4716 7851 7851 -0.08449121507783275 DQRFRLGLF 9 Unmodified _DQRFRLGLF_ 0 0 0 REV__ENSG00000184451|ENST00000332438|CCR10 REV__ENSG00000184451|ENST00000332438|CCR10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3228759765625 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 69.285 1 65.894 65.394 66.394 -3.3903 0 0 0 0.19646 1 13101 13101 0.029283 0.016017 1 + 7597 18898 4713 4717 7852 7852 0.055439428370846144 DQRGKREFERY 11 Unmodified _DQRGKREFERY_ 0 0 0 ENSG00000130956|ENST00000375249|HABP4 ENSG00000130956|ENST00000375249|HABP4 ENSG00000130956|ENST00000375249|HABP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3759155273438 2 742.373663 1482.73277 NaN NaN NaN NaN NaN NaN NaN 172.45 1 167.66 167.16 168.16 -4.7898 0 0 0 0.22632 1 35133 35133 1.4551 0.8698 1 7598 3652 4714 4718 7853 7853 0.010716626296925824 DQRGRRRSF 9 Unmodified _DQRGRRRSF_ 0 0 0 nc|ENSG00000140798|Q96J65-5|ABCC12;nc|ENSG00000140798|Q96J65-3|ABCC12;nc|ENSG00000140798|Q96J65-2|ABCC12;ABCC12|p.M936Yfs*84|1|0.32|ENSG00000140798|chr16:48104236-48104237|-/A|frameshift_variant;ABCC12|p.R1075Cfs*54|1|0.38|ENSG00000140798|chr16:48091182-48091183|-/CA|frameshift_variant;nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12;nc|ENSG00000140798|Q96J65-4|ABCC12 nc|ENSG00000140798|Q96J65-5|ABCC12 nc|ENSG00000140798|Q96J65-5|ABCC12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.26220703125 2 589.318494 1176.62244 0.43261 0.00025494 0.88926 0.00052405 1.3219 0.000779 589.3189703389662 81.861 0.72982 78.304 77.959 78.689 -3.557 51 20 3 0 0 0 0.74257 1 16052 16052 4.3292 4.3292 1 6657500 7599 16 4715 4719 7854 7854 0.04118907151973872 DQRHNDGPW 9 Unmodified _DQRHNDGPW_ 0 0 0 REV__MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant REV__MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.22076416015625 3 375.50045 1123.47952 -0.19796 -7.4332E-05 -2.6132 -0.00098125 -2.8111 -0.0010556 375.499738829222 72.63 0.17719 72.63 72.471 72.648 0 6 4 2 0 0 0 0.8606 1 14081 14081 4.1895 0 1 986520 + 7600 23888 4716 4720 7855 7855 -0.07728145029909683 DQRIIDGY 8 Unmodified _DQRIIDGY_ 0 0 0 REV__B3GALNT1|p.T222Pfs*23|1|0.35|ENSG00000169255|chr3:161086091-161086091|T/-|frameshift_variant REV__B3GALNT1|p.T222Pfs*23|1|0.35|ENSG00000169255|chr3:161086091-161086091|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2767028808594 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 65.702 1 62.419 61.919 62.919 -3.2832 0 0 0 0.20896 1 12355 12355 18.135 1.9859 1 + 7601 13165 4717 4721 7856 7856 -0.013039934875678227 DQSADSEGDY 10 Unmodified _DQSADSEGDY_ 0 0 0 ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK ENSG00000123572|ENST00000243300|NRK ENSG00000123572|ENST00000243300|NRK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7738647460938 2 543.69654 1085.37853 NaN NaN NaN NaN NaN NaN NaN 123.91 1 123.91 123.41 124.41 0 0 0 0 0.22588 1 24426 24426 6.7232 0.51738 1 7602 3274 4718 4722 7857 7857 -0.16074686313936581 DQSFRERANQK 11 Unmodified _DQSFRERANQK_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2311706542969 3 460.232251 1377.67492 NaN NaN NaN NaN NaN NaN NaN 112.05 1 107.62 107.12 108.12 -4.4231 0 0 0 0.22632 1 22081 22081 0.03141 0 1 7603 7917 4719 4723 7858 7858 0.0011940070428408944 DQSHHHGY 8 Unmodified _DQSHHHGY_ 0 0 0 REV__nc|ENSG00000153094|O43521-17|BCL2L11 REV__nc|ENSG00000153094|O43521-17|BCL2L11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26513671875 2 490.702097 979.389641 -0.022871 -1.1223E-05 0.7619 0.00037387 0.73903 0.00036264 490.7022561387179 70.157 0.45625 70.157 69.921 70.378 0 29 12 3 0 0 0 0.86749 1 13575 13575 21.747 0 1 3466800 + 7604 24103 4720 4724 7859 7859 -0.10087774638475366 DQSINLLTA 9 Unmodified _DQSINLLTA_ 0 0 0 ENST00000538503.5_1_12:121868093-121877978:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B ENST00000538503.5_1_12:121868093-121877978:-|nuORF ENST00000538503.5_1_12:121868093-121877978:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2656555175781 2 487.761289 973.508025 -0.2824 -0.00013775 0.42481 0.0002072 0.1424 6.946E-05 487.76235588978847 43.109 4.8749 40.503 40.142 45.017 -2.606 439 139 6 0 0 0 0.46882 1 7865 7865 21.537 2.175 1 3396799999.9999995 7605 1749 4721 4725 7860 7860 0.020211598266769215 DQSLRPPAP 9 Unmodified _DQSLRPPAP_ 0 0 0 REV__ENSG00000161328|ENST00000270115|LRRC56 REV__ENSG00000161328|ENST00000270115|LRRC56 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2745056152344 2 490.761623 979.508694 -0.018027 -8.8472E-06 -0.26919 -0.00013211 -0.28721 -0.00014095 490.7615417852324 49.973 0.45502 47.092 46.763 47.218 -2.8811 18 12 2 0 0 0 0.32263 1 9428 9428 46.021 8.047 1 1101000 + 7606 17455 4722 4726 7861 7861 0.01811999266362818 DQSVVEVYF 9 Unmodified _DQSVVEVYF_ 0 0 0 PCDH7|p.G536D|1|0.41|ENSG00000169851|chr4:30723029-30723029|G/A|missense_variant PCDH7|p.G536D|1|0.41|ENSG00000169851|chr4:30723029-30723029|G/A|missense_variant PCDH7|p.G536D|1|0.41|ENSG00000169851|chr4:30723029-30723029|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7822875976562 2 543.261122 1084.50769 0.45795 0.00024879 -2.6834 -0.0014578 -2.2255 -0.001209 543.2601617136872 120.28 0.6181 115.81 115.37 115.99 -4.467 27 17 2 0 0 0 0.62921 1 23136 23136 18.146 2.2992 1 1240800 7607 12756 4723 4727 7862 7862 -0.03118259893199138 DQSWRGHLS 9 Unmodified _DQSWRGHLS_ 0 0 0 MTX1|p.W163Lfs*69|1|0.19|ENSG00000173171|chr1:155209284-155209285|-/G|frameshift_variant MTX1|p.W163Lfs*69|1|0.19|ENSG00000173171|chr1:155209284-155209285|-/G|frameshift_variant MTX1|p.W163Lfs*69|1|0.19|ENSG00000173171|chr1:155209284-155209285|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7931518554688 2 543.259779 1084.50501 0.49468 0.00026874 -1.0164 -0.00055214 -0.52167 -0.0002834 543.2596135316967 120.41 0.69888 115.89 115.47 116.17 -4.5221 25 19 2 0 0 0 0.69192 1 23663 23663 14.838 0 1 1851400 7608 12173 4724 4728 7863 7863 -0.033866705074842685 DQSWRGHLS 9 Unmodified _DQSWRGHLS_ 0 0 0 MTX1|p.W163Lfs*69|1|0.19|ENSG00000173171|chr1:155209284-155209285|-/G|frameshift_variant MTX1|p.W163Lfs*69|1|0.19|ENSG00000173171|chr1:155209284-155209285|-/G|frameshift_variant MTX1|p.W163Lfs*69|1|0.19|ENSG00000173171|chr1:155209284-155209285|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7930297851562 2 543.259779 1084.50501 0.63878 0.00034702 -0.70384 -0.00038237 -0.065062 -3.5346E-05 543.2596462351808 120.46 0.62418 115.82 115.42 116.04 -4.645 24 17 2 0 0 0 0.69192 1 23071 23071 20.454 5.6154 1 2143100 7609 12173 4724 4728 7864 7864 -0.033866705074842685 DQTIACGVL 9 Unmodified _DQTIACGVL_ 0 0 0 REV__ENSG00000008869|ENST00000233099|HEATR5B REV__ENSG00000008869|ENST00000233099|HEATR5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2460021972656 2 460.23131 918.448068 -0.099178 -4.5645E-05 -0.048251 -2.2207E-05 -0.14743 -6.7851E-05 460.23131516641246 45.784 0.52029 42.944 42.548 43.068 -2.8409 20 14 2 0 0 0 0.55979 1 8592 8592 15.847 3.3156 1 1391100 + 7610 13906 4725 4729 7865 7865 -0.014418541082250158 DQTILENKQQY 11 Unmodified _DQTILENKQQY_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000487498.1_1_3:123649947-123650302:-|nuORF;nc|ENSG00000175455|Q49A88-4|CCDC14;ENST00000495381.5_1_3:123633936-123674711:-|nuORF;CCDC14|p.E558Vfs*7|1|0.04|ENSG00000175455|chr3:123931228-123931229|-/TTGAATAA|frameshift_variant;CCDC14|p.E558Rfs*13|1|0.03|ENSG00000175455|chr3:123931229-123931230|-/T|frameshift_variant;CCDC14|p.V615Afs*13|1|0.05|ENSG00000175455|chr3:123915674-123915675|-/TAATGAG|frameshift_variant nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.52587890625 3 460.564896 1378.67286 0.007559 3.4814E-06 0.22552 0.00010387 0.23308 0.00010735 460.5649923390026 53.772 0.45525 50.645 50.388 50.843 -3.1271 30 12 4 0 0 0 0.79428 1 9902 9902 4.4062 1.7749 1 2370300 7611 6411 4726 4730 7866 7866 -0.0013307282420100819 DQTPDHAH 8 Unmodified _DQTPDHAH_ 0 0 0 ENST00000247930.4_1_7:149129383-149129452:-|nuORF ENST00000247930.4_1_7:149129383-149129452:-|nuORF ENST00000247930.4_1_7:149129383-149129452:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2332763671875 2 460.696481 919.378408 0.66534 0.00030652 -0.08149 -3.7542E-05 0.58385 0.00026898 460.6963469909568 108.81 0.59347 104.63 104.35 104.95 -4.1826 25 16 2 0 0 0 0.97966 1 20922 20922 11.64 11.64 1 1099700 7612 8212 4727 4731 7867 7867 -0.08450596732620852 DQVDRQMW 8 Unmodified _DQVDRQMW_ 0 0 0 REV__nc|ENSG00000204071|Q6IPX3-2|TCEAL6 REV__nc|ENSG00000204071|Q6IPX3-2|TCEAL6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2021179199219 3 359.830919 1076.47093 -0.23005 -8.278E-05 1.1501 0.00041385 0.92008 0.00033107 359.8313838156279 64.337 0.21607 61.34 61.255 61.471 -2.9975 6 5 2 0 0 0 0.99312 1 12435 12435 1.3295 0 1 569800 + 7613 19253 4728 4732 7868 7868 -0.0642483499075297 DQVELRWF 8 Unmodified _DQVELRWF_ 0 0 0 REV__ENST00000260563.4_1_1:100731885-100733749:+|nuORF REV__ENST00000260563.4_1_1:100731885-100733749:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7806396484375 2 546.777274 1091.53999 -0.31444 -0.00017193 0.40219 0.00021991 0.087749 4.7979E-05 546.7774577072882 108.26 1.041 103.94 103.52 104.56 -4.32 90 29 4 0 0 0 0.49114 1 21388 21388 28.487 2.1456 1 42284000 + 7614 20158 4729 4733 7869 7869 -0.002114276995371256 DQVFFIFFFVF 11 Unmodified _DQVFFIFFFVF_ 0 0 0 REV__ENST00000472397.5_1_1:155226487-155230214:-|nuORF REV__ENST00000472397.5_1_1:155226487-155230214:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 728.7764892578125 2 728.371007 1454.72746 NaN NaN NaN NaN NaN NaN NaN 174.94 1 170.04 169.54 170.54 -4.8916 0 0 0 0.22632 1 34848 34848 5.4027 5.2917 1 + 7615 15483 4730 4734 7870 7870 0.018285907851577576 DQVFRCVI 8 Unmodified _DQVFRCVI_ 0 0 0 REV__ENSG00000168461|ENST00000578921|RAB31 REV__ENSG00000168461|ENST00000578921|RAB31 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26531982421875 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 46.95 1 44.008 43.508 44.508 -2.9421 0 0 0 0.17344 1 8545 8545 34.102 17.16 1 + 7616 18027 4731 4735 7871 7871 0.005578448826440763 DQVFRCVI 8 Unmodified _DQVFRCVI_ 0 0 0 REV__ENSG00000168461|ENST00000578921|RAB31 REV__ENSG00000168461|ENST00000578921|RAB31 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2560729980469 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 54.693 1 51.558 51.058 52.058 -3.1352 0 0 0 0.21486 1 10098 10098 11.64 0 1 + 7617 18027 4731 4735 7872 7872 0.005578448826440763 DQVLNVLL 8 Unmodified _DQVLNVLL_ 0 0 0 nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2 nc|ENSG00000089057|Q9UGH3-2|SLC23A2 nc|ENSG00000089057|Q9UGH3-2|SLC23A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23974609375 2 457.271293 912.528032 -0.15031 -6.8733E-05 0.38195 0.00017466 0.23164 0.00010592 457.27138531572166 47.012 0.58724 44.171 43.972 44.56 -2.8409 27 16 2 0 0 0 0.68128 1 8858 8858 16.942 0 1 931360 7618 1747 4732 4736 7873 7873 0.06826955557301062 DQVLNVLL 8 Unmodified _DQVLNVLL_ 0 0 0 nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2 nc|ENSG00000089057|Q9UGH3-2|SLC23A2 nc|ENSG00000089057|Q9UGH3-2|SLC23A2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 457.271293 912.528032 0.55351 0.00025311 -0.40916 -0.0001871 0.14436 6.601E-05 457.27109998552737 44.506 0.48895 44.506 44.288 44.777 0 0.18592 -0.00046947 NaN 16.942 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 837000 7619 1747 4732 4736 0.06826955557301062 DQVLNVLL 8 Unmodified _DQVLNVLL_ 0 0 0 nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2 nc|ENSG00000089057|Q9UGH3-2|SLC23A2 nc|ENSG00000089057|Q9UGH3-2|SLC23A2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 457.271293 912.528032 -0.05258 -2.4043E-05 0.20411 9.3334E-05 0.15153 6.9291E-05 457.2713441992222 47.225 0.65085 44.283 43.827 44.478 -2.9421 -0.036942 9.1387E-05 NaN 16.942 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1339600 7620 1747 4732 4736 0.06826955557301062 DQVQVMPL 8 Unmodified _DQVQVMPL_ 0 0 0 SORCS2|p.F959V|1|0.14|ENSG00000184985|chr4:7728355-7728355|T/G|missense_variant SORCS2|p.F959V|1|0.14|ENSG00000184985|chr4:7728355-7728355|T/G|missense_variant SORCS2|p.F959V|1|0.14|ENSG00000184985|chr4:7728355-7728355|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2416687011719 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 84.163 1 80.253 79.753 80.753 -3.9093 0 0 0 0.20896 1 15994 15994 18.135 0 1 7621 25708 4733 4737 7874 7874 0.0017073627145691717 DQVRLDES 8 Unmodified _DQVRLDES_ 0 0 0 REV__ENSG00000153107|ENST00000341068|ANAPC1 REV__ENSG00000153107|ENST00000341068|ANAPC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23614501953125 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 87.186 1 87.186 86.686 87.686 0 0 0 0 0.22684 1 17017 17017 0.62683 0 1 + 7622 17135 4734 4738 7875 7875 -0.030568877298605912 DQVRQHRR 8 Unmodified _DQVRQHRR_ 0 0 0 REV__ENSG00000110811|ENST00000290510|P3H3 REV__ENSG00000110811|ENST00000290510|P3H3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.777587890625 2 547.799937 1093.58532 0.14868 8.1446E-05 -3.347 -0.0018335 -3.1984 -0.0017521 547.7983421740115 76.064 0.1409 72.649 72.574 72.715 -3.4151 5 3 2 0 0 0 0.97173 1 14845 14845 7.9102 0 1 1109100 + 7623 15220 4735 4739 7876 7876 0.04227235606208524 DQVSILAVVT 10 Unmodified _DQVSILAVVT_ 0 0 0 REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26708984375 2 522.800414 1043.58628 -0.35526 -0.00018573 1.0984 0.00057426 0.74317 0.00038853 522.8005554658868 91.871 0.20982 87.777 87.598 87.808 -4.0946 8 5 2 0 0 0 0.8821 1 17491 17491 6.6304 1.3335 1 691490 + 7624 19794 4736 4740 7877 7877 0.06622592411918049 DQVWPGGD 8 Unmodified _DQVWPGGD_ 0 0 0 REV__ENSG00000154856|ENST00000355285|APCDD1 REV__ENSG00000154856|ENST00000355285|APCDD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2279968261719 2 437.1905 872.366446 NaN NaN NaN NaN NaN NaN NaN 67.83 1 64.722 64.222 65.222 -3.1086 0 0 0 0.23584 1 13161 13161 0.25148 0 1 + 7625 17200 4737 4741 7878 7878 -0.07484213475800061 DQVYSSTTF 9 Unmodified _DQVYSSTTF_ 0 0 0 REV__nc|ENSG00000136536|Q9H992-2|MARCHF7 REV__nc|ENSG00000136536|Q9H992-2|MARCHF7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.696533203125 2 524.235104 1046.45566 0.076103 3.9896E-05 -2.1503 -0.0011272 -2.0742 -0.0010873 524.2339332455849 119.8 0.54187 115.16 114.91 115.45 -4.645 21 14 2 0 0 0 0.70212 1 23003 23003 16.149 8.239 1 2879700 + 7626 16338 4738 4742 7879 7879 -0.0657142330694569 DQWCPDGSH 9 Unmodified _DQWCPDGSH_ 0 0 0 ZNF48|p.R249Dfs*43|3|0.2|ENSG00000180035|chr16:30397989-30397989|C/-|frameshift_variant ZNF48|p.R249Dfs*43|3|0.2|ENSG00000180035|chr16:30397989-30397989|C/-|frameshift_variant ZNF48|p.R249Dfs*43|3|0.2|ENSG00000180035|chr16:30397989-30397989|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6968994140625 2 522.695623 1043.37669 0.23202 0.00012127 1.7828 0.00093184 2.0148 0.0010531 522.6963331661593 110.62 0.59702 110.62 110.33 110.93 0 38 16 4 0 0 0 0.42842 1 21739 21739 1.2148 1.087 1 4285000 7627 26623 4739 4743 7880 7880 -0.14325973812901793 DQWKIENY 8 Unmodified _DQWKIENY_ 0 0 0 ENSG00000176681|ENST00000320254|LRRC37A;ENSG00000238083|ENST00000576629|LRRC37A2;ENST00000572638.1_1_17:44625595-44632942:+|nuORF ENSG00000176681|ENST00000320254|LRRC37A ENSG00000176681|ENST00000320254|LRRC37A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7733764648438 2 548.258914 1094.50327 0.38281 0.00020988 2.6034 0.0014273 2.9862 0.0016372 548.2601393573119 36.854 0.57241 36.854 36.455 37.027 0 21 15 3 0 0 0 0.70215 1 6822 6822 36.127 0 1 1674200 7628 6481 4740 4744 7881 7881 -0.04019724316094653 DQYAEWVG 8 Unmodified _DQYAEWVG_ 0 0 0 REV__ENSG00000171246|ENST00000306773|NPTX1 REV__ENSG00000171246|ENST00000306773|NPTX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.1684875488281 3 323.14338 966.408311 -0.17501 -5.6554E-05 0.33952 0.00010971 0.16451 5.316E-05 323.1434899982592 77.132 0.51687 77.132 76.91 77.427 0 18 14 2 0 0 0 1.0278 1 14967 14967 0 0 1 911880 + 7629 18215 4741 4745 7882 7882 -0.07623657787280536 DQYIIFGTE 9 Unmodified _DQYIIFGTE_ 0 0 0 ENST00000554990.5_1_14:50886739-50915587:-|nuORF;ENSG00000012983|ENST00000682126|MAP4K5 ENST00000554990.5_1_14:50886739-50915587:-|nuORF ENST00000554990.5_1_14:50886739-50915587:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7936401367188 2 543.261122 1084.50769 0.10427 5.6648E-05 -2.0705 -0.0011248 -1.9662 -0.0010681 543.7614506733548 141.52 0.52754 136.53 136.34 136.87 -4.9877 23 14 3 0 0 0 0.27986 2 27249 27249;27284 32.786 5.1569 1 2621400 7630 1089 4742 4746 7883;7884 7883 -0.03118259893199138 DQYKRIPN 8 Unmodified _DQYKRIPN_ 0 0 0 REV__TPX2|p.G723D|1|0.19|ENSG00000088325|chr20:31801004-31801004|G/A|missense_variant REV__TPX2|p.G723D|1|0.19|ENSG00000088325|chr20:31801004-31801004|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 516.7825927734375 2 517.274898 1032.53524 -0.26003 -0.00013451 -0.065315 -3.3786E-05 -0.32534 -0.00016829 517.2747886299958 47.963 0.49953 45.094 44.809 45.308 -2.869 19 13 2 0 0 0 0.97966 1 9022 9022 3.9444 0 1 1116900 + 7631 24840 4743 4747 7885 7885 0.020276881577274253 DQYWLRTT 8 Unmodified _DQYWLRTT_ 0 0 0 REV__ENST00000551132.5_1_12:70672019-70695521:+|nuORF REV__ENST00000551132.5_1_12:70672019-70695521:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7733764648438 2 541.766906 1081.51926 0.18089 9.8001E-05 0.20223 0.00010956 0.38312 0.00020756 541.7669614214841 86.517 1.2674 82.788 82.274 83.542 -3.7289 114 35 6 0 0 0 0.69031 1 16549 16549 15.847 0 1 77529000 + 7632 22931 4744 4748 7886 7886 -0.018240180791963212 DRAETLIP 8 Unmodified _DRAETLIP_ 0 0 0 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2339782714844 2 457.750724 913.486896 0.061808 2.8293E-05 0.55368 0.00025345 0.61549 0.00028174 457.7508850634773 26.007 0.82844 24.372 23.788 24.616 -1.6347 48 23 3 0 0 0 8448 1 4182 4182 1.7423 1.1154 1 3130000 7633 26079 4745 4749 7887 7887 0.026691945178072274 DRCTQCLGGE 10 Unmodified _DRCTQCLGGE_ 0 0 0 REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2633056640625 2 541.223691 1080.43283 0.62538 0.00033847 -1.4068 -0.00076138 -0.78141 -0.00042292 541.7234102041353 119.69 0.1501 115.04 114.91 115.06 -4.645 5 3 2 0 0 0 0.871 1 22953 22953 10.074 0 1 409590 + 7634 14511 4746 4750 7888 7888 -0.10417088967710697 DRCYNCYE 8 Unmodified _DRCYNCYE_ 0 0 0 REV__nc|ENSG00000196460|Q6ZV50|RFX8 REV__nc|ENSG00000196460|Q6ZV50|RFX8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 532.8533935546875 2 533.191859 1064.36917 NaN NaN NaN NaN NaN NaN NaN 8.5751 1 7.7809 7.2809 8.2809 -0.79424 0 0 0 0.2396 1 904 904 0.30703 0 1 + 7635 19249 4747 4751 7889 7889 -0.1604444940483063 DRCYNCYE 8 Unmodified _DRCYNCYE_ 0 0 0 REV__nc|ENSG00000196460|Q6ZV50|RFX8 REV__nc|ENSG00000196460|Q6ZV50|RFX8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 532.8552856445312 2 533.191859 1064.36917 NaN NaN NaN NaN NaN NaN NaN 11.553 1 10.649 10.149 11.149 -0.90401 0 0 0 0.2396 1 1538 1538 0.30703 0 1 + 7636 19249 4747 4751 7890 7890 -0.1604444940483063 DRCYNCYE 8 Unmodified _DRCYNCYE_ 0 0 0 REV__nc|ENSG00000196460|Q6ZV50|RFX8 REV__nc|ENSG00000196460|Q6ZV50|RFX8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2700805664062 2 533.191859 1064.36917 NaN NaN NaN NaN NaN NaN NaN 13.742 1 12.569 12.069 13.069 -1.173 0 0 0 0.2396 1 1811 1811 0.30703 0 1 + 7637 19249 4747 4751 7891 7891 -0.1604444940483063 DRCYNCYE 8 Unmodified _DRCYNCYE_ 0 0 0 REV__nc|ENSG00000196460|Q6ZV50|RFX8 REV__nc|ENSG00000196460|Q6ZV50|RFX8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27001953125 2 533.191859 1064.36917 NaN NaN NaN NaN NaN NaN NaN 13.645 1 12.434 11.934 12.934 -1.2106 0 0 0 0.2396 1 1744 1744 0.30703 0 1 + 7638 19249 4747 4751 7892 7892 -0.1604444940483063 DRCYNCYE 8 Unmodified _DRCYNCYE_ 0 0 0 REV__nc|ENSG00000196460|Q6ZV50|RFX8 REV__nc|ENSG00000196460|Q6ZV50|RFX8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2685546875 2 533.191859 1064.36917 NaN NaN NaN NaN NaN NaN NaN 13.915 1 12.705 12.205 13.205 -1.2106 0 0 0 0.2396 1 1803 1803 0.30703 0 1 + 7639 19249 4747 4751 7893 7893 -0.1604444940483063 DRCYNCYE 8 Unmodified _DRCYNCYE_ 0 0 0 REV__nc|ENSG00000196460|Q6ZV50|RFX8 REV__nc|ENSG00000196460|Q6ZV50|RFX8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2703247070312 2 533.191859 1064.36917 NaN NaN NaN NaN NaN NaN NaN 16.128 1 14.775 14.275 15.275 -1.3534 0 0 0 0.2396 1 2269 2269 0.30703 0 1 + 7640 19249 4747 4751 7894 7894 -0.1604444940483063 DRCYNCYE 8 Unmodified _DRCYNCYE_ 0 0 0 REV__nc|ENSG00000196460|Q6ZV50|RFX8 REV__nc|ENSG00000196460|Q6ZV50|RFX8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2778930664062 2 533.191859 1064.36917 NaN NaN NaN NaN NaN NaN NaN 18.977 1 17.342 16.842 17.842 -1.6351 0 0 0 0.2396 1 2839 2839 0.30703 0 1 + 7641 19249 4747 4751 7895 7895 -0.1604444940483063 DRCYNCYE 8 Unmodified _DRCYNCYE_ 0 0 0 REV__nc|ENSG00000196460|Q6ZV50|RFX8 REV__nc|ENSG00000196460|Q6ZV50|RFX8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2704467773438 2 533.191859 1064.36917 NaN NaN NaN NaN NaN NaN NaN 19.149 1 17.514 17.014 18.014 -1.6351 0 0 0 0.2396 1 2873 2873 0.30703 0 1 + 7642 19249 4747 4751 7896 7896 -0.1604444940483063 DRCYNCYE 8 Unmodified _DRCYNCYE_ 0 0 0 REV__nc|ENSG00000196460|Q6ZV50|RFX8 REV__nc|ENSG00000196460|Q6ZV50|RFX8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.268310546875 2 533.191859 1064.36917 NaN NaN NaN NaN NaN NaN NaN 22.312 1 20.523 20.023 21.023 -1.7886 0 0 0 0.2396 1 3536 3536 0.30703 0 1 + 7643 19249 4747 4751 7897 7897 -0.1604444940483063 DRCYNCYE 8 Unmodified _DRCYNCYE_ 0 0 0 REV__nc|ENSG00000196460|Q6ZV50|RFX8 REV__nc|ENSG00000196460|Q6ZV50|RFX8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2771606445312 2 533.191859 1064.36917 NaN NaN NaN NaN NaN NaN NaN 23.581 1 21.793 21.293 22.293 -1.7886 0 0 0 0.2396 1 3800 3800 0.30703 0 1 + 7644 19249 4747 4751 7898 7898 -0.1604444940483063 DRDFQIRH 8 Unmodified _DRDFQIRH_ 0 0 0 MYO1D|p.R504Q|1|0.17|ENSG00000176658|chr17:32748963-32748963|C/T|missense_variant MYO1D|p.R504Q|1|0.17|ENSG00000176658|chr17:32748963-32748963|C/T|missense_variant MYO1D|p.R504Q|1|0.17|ENSG00000176658|chr17:32748963-32748963|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7772216796875 2 543.775597 1085.53664 0.55065 0.00029943 1.7719 0.00096352 2.3226 0.001263 543.7768846393423 106.69 0.70808 106.69 106.26 106.97 0 30 19 2 0 0 0 0.49114 2 20993 20992;20993 28.487 3.4387 1 2032400 7645 12189 4748 4752 7899;7900 7900 -0.0027067775354225887 DRFARVTD 8 Unmodified _DRFARVTD_ 0 0 0 REV__POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant REV__POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2541198730469 2 490.251423 978.488293 NaN NaN NaN NaN NaN NaN NaN 101.4 1 101.4 100.9 101.9 0 0 0 0 0.21171 1 19903 19903 15.847 4.2069 1 + 7646 18538 4749 4753 7901 7901 -0.0018117139344440147 DRFGIWTGEY 10 Unmodified _DRFGIWTGEY_ 0 0 0 ENSG00000247315|ENST00000500893|ZCCHC3;nc|ENSG00000247315|Q9NUD5-2|ZCCHC3 ENSG00000247315|ENST00000500893|ZCCHC3 ENSG00000247315|ENST00000500893|ZCCHC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7635498046875 2 622.290745 1242.56694 0.33986 0.00021149 0.92096 0.00057311 1.2608 0.0007846 622.2909546235594 86.595 0.70126 86.595 86.245 86.946 0 31 19 3 0 0 0 0.44698 1 16924 16924 0.84494 0 1 2487500 7647 7887 4750 4754 7902 7902 -0.04464363878992117 DRFHYLLD 8 Unmodified _DRFHYLLD_ 0 0 0 ENSG00000128268|ENST00000341184|MGAT3 ENSG00000128268|ENST00000341184|MGAT3 ENSG00000128268|ENST00000341184|MGAT3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20172119140625 3 360.182058 1077.52434 NaN NaN NaN NaN NaN NaN NaN 119.95 1 115.49 114.99 115.99 -4.467 0 0 0 0.21486 1 23092 23092 2.9952 1.8019 1 7648 3514 4751 4755 7903 7903 -0.011317142165808036 DRFVLEAFS 9 Unmodified _DRFVLEAFS_ 0 0 0 REV__nc|ENSG00000022556|Q9NX02-4|NLRP2 REV__nc|ENSG00000022556|Q9NX02-4|NLRP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.781982421875 2 542.277106 1082.53966 0.65158 0.00035334 -0.842 -0.0004566 -0.19042 -0.00010326 542.2766104118516 48.056 0.70208 48.056 47.786 48.488 0 59 19 4 0 0 0 0.46882 1 9065 9065 21.537 3.3906 1 20817000 + 7649 13989 4752 4756 7904 7904 0.0016915258061089844 DRFWDQWYLWY 11 Unmodified _DRFWDQWYLWY_ 0 0 0 nc|ENSG00000160145|O60229|KALRN;nc|ENSG00000160145|O60229-2|KALRN;ENST00000488825.5_1_3:123813684-123881061:+|nuORF nc|ENSG00000160145|O60229|KALRN nc|ENSG00000160145|O60229|KALRN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4561767578125 2 839.377883 1676.74121 NaN NaN NaN NaN NaN NaN NaN 169.38 1 164.59 164.09 165.09 -4.7898 0 0 0 0.23698 1 34307 34307 0.35063 0.35063 1 7650 12404 4753 4757 7905 7905 -0.0700878345367073 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.1080322265625 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 5.4672 1 5.4672 4.9672 5.9672 0 0 0 0 0.23698 1 291 291 0 0 1 + 7651 23123 4754 4758 7906 7906 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.1017761230469 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 12.255 1 12.255 11.755 12.755 0 0 0 0 0.23698 1 1694 1694 0 0 1 + 7652 23123 4754 4758 7907 7907 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2091979980469 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 13.49 1 13.49 12.99 13.99 0 0 0 0 0.23698 1 1950 1950 0 0 1 + 7653 23123 4754 4758 7908 7908 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2130126953125 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 14.683 1 14.683 14.183 15.183 0 0 0 0 0.22632 1 2202 2202 0 0 1 + 7654 23123 4754 4758 7909 7909 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2084045410156 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 18.058 1 18.058 17.558 18.558 0 0 0 0 0.23698 1 2886 2886 0 0 1 + 7655 23123 4754 4758 7910 7910 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.1013488769531 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 4.0729 1 3.4467 2.9467 3.9467 -0.62626 0 0 0 0.23698 1 14 14 0 0 1 + 7656 23123 4754 4758 7911 7911 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.1017761230469 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 6.2071 1 5.5808 5.0808 6.0808 -0.62626 0 0 0 0.23698 1 434 434 0 0 1 + 7657 23123 4754 4758 7912 7912 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.1013488769531 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 12.882 1 11.872 11.372 12.372 -1.0098 0 0 0 0.23698 1 1827 1827 0 0 1 + 7658 23123 4754 4758 7913 7913 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2046813964844 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 13.044 1 12.035 11.535 12.535 -1.0098 0 0 0 0.23698 1 1862 1862 0 0 1 + 7659 23123 4754 4758 7914 7914 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.1011962890625 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 13.492 1 12.482 11.982 12.982 -1.0098 0 0 0 0.23698 1 1960 1960 0 0 1 + 7660 23123 4754 4758 7915 7915 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.222900390625 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 13.617 1 12.607 12.107 13.107 -1.0098 0 0 0 0.23698 1 1987 1987 0 0 1 + 7661 23123 4754 4758 7916 7916 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2218017578125 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 17.417 1 16.106 15.606 16.606 -1.3109 0 0 0 0.23698 1 2787 2787 0 0 1 + 7662 23123 4754 4758 7917 7917 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.10186767578125 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 52.03 1 49.148 48.648 49.648 -2.8824 0 0 0 0.23698 1 9895 9895 0 0 1 + 7663 23123 4754 4758 7918 7918 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.10125732421875 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 179.13 1 174.34 173.84 174.84 -4.7898 0 0 0 0.23698 1 36652 36652 0 0 1 + 7664 23123 4754 4758 7919 7919 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21807861328125 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 11.882 1 10.753 10.253 11.253 -1.1293 0 0 0 0.22632 1 1433 1433 0 0 1 + 7665 23123 4754 4758 7920 7920 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21807861328125 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 11.894 1 10.764 10.264 11.264 -1.1293 0 0 0 0.23698 1 1434 1434 0 0 1 + 7666 23123 4754 4758 7921 7921 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21820068359375 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 12.136 1 11.006 10.506 11.506 -1.1293 0 0 0 0.22632 1 1471 1471 0 0 1 + 7667 23123 4754 4758 7922 7922 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2108459472656 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 12.223 1 11.093 10.593 11.593 -1.1293 0 0 0 0.22632 1 1485 1485 0 0 1 + 7668 23123 4754 4758 7923 7923 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2108459472656 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 12.238 1 11.109 10.609 11.609 -1.1293 0 0 0 0.23698 1 1487 1487 0 0 1 + 7669 23123 4754 4758 7924 7924 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2225646972656 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 13.235 1 12.062 11.562 12.562 -1.173 0 0 0 0.23698 1 1699 1699 0 0 1 + 7670 23123 4754 4758 7925 7925 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2063903808594 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 13.359 1 12.186 11.686 12.686 -1.173 0 0 0 0.23698 1 1725 1725 0 0 1 + 7671 23123 4754 4758 7926 7926 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2140197753906 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 13.856 1 12.683 12.183 13.183 -1.173 0 0 0 0.22632 1 1832 1832 0 0 1 + 7672 23123 4754 4758 7927 7927 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2223815917969 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 13.922 1 12.749 12.249 13.249 -1.173 0 0 0 0.23698 1 1847 1847 0 0 1 + 7673 23123 4754 4758 7928 7928 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.1009826660156 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 14.768 1 13.595 13.095 14.095 -1.173 0 0 0 0.23698 1 2022 2022 0 0 1 + 7674 23123 4754 4758 7929 7929 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.10272216796875 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 15.521 1 14.299 13.799 14.799 -1.2219 0 0 0 0.23698 1 2179 2179 0 0 1 + 7675 23123 4754 4758 7930 7930 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2145690917969 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 17.951 1 16.679 16.179 17.179 -1.2722 0 0 0 0.22632 1 2671 2671 0 0 1 + 7676 23123 4754 4758 7931 7931 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2200012207031 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 18.44 1 17.142 16.642 17.642 -1.2977 0 0 0 0.23698 1 2765 2765 0 0 1 + 7677 23123 4754 4758 7932 7932 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2046813964844 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 22.191 1 20.738 20.238 21.238 -1.4535 0 0 0 0.23698 1 3527 3527 0 0 1 + 7678 23123 4754 4758 7933 7933 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21136474609375 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 24.981 1 23.447 22.947 23.947 -1.5342 0 0 0 0.23698 1 4088 4088 0.08335 0 1 + 7679 23123 4754 4758 7934 7934 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2074279785156 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 26.016 1 24.382 23.882 24.882 -1.6347 0 0 0 0.23698 1 4301 4301 0 0 1 + 7680 23123 4754 4758 7935 7935 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.1007080078125 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 26.08 1 24.445 23.945 24.945 -1.6347 0 0 0 0.23698 1 4313 4313 0 0 1 + 7681 23123 4754 4758 7936 7936 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2117614746094 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 26.146 1 24.511 24.011 25.011 -1.6347 0 0 0 0.22632 1 4327 4327 0 0 1 + 7682 23123 4754 4758 7937 7937 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.1011962890625 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 29.302 1 27.41 26.91 27.91 -1.8928 0 0 0 0.23698 1 4979 4979 0 0 1 + 7683 23123 4754 4758 7938 7938 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2143249511719 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 8.5438 1 7.5092 7.0092 8.0092 -1.0347 0 0 0 0.22632 1 808 808 0 0 1 + 7684 23123 4754 4758 7939 7939 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.1016845703125 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 22.716 1 20.928 20.428 21.428 -1.7886 0 0 0 0.23698 1 3621 3621 0.08335 0.08335 1 + 7685 23123 4754 4758 7940 7940 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21588134765625 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 179.65 1 174.73 174.23 175.23 -4.9114 0 0 0 0.22632 1 35848 35848 0 0 1 + 7686 23123 4754 4758 7941 7941 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21588134765625 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 179.65 1 174.74 174.24 175.24 -4.9114 0 0 0 0.23698 1 35849 35849 0 0 1 + 7687 23123 4754 4758 7942 7942 -0.2719192580059371 DRGCCCCCCGT 11 Unmodified _DRGCCCCCCGT_ 0 0 0 REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.1015319824219 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 179.69 1 174.78 174.28 175.28 -4.9114 0 0 0 0.23698 1 35857 35857 0 0 1 + 7688 23123 4754 4758 7943 7943 -0.2719192580059371 DRGLKQRHL 9 Unmodified _DRGLKQRHL_ 0 0 0 ENST00000305783.12_1_17:58040598-58041981:-|nuORF ENST00000305783.12_1_17:58040598-58041981:-|nuORF ENST00000305783.12_1_17:58040598-58041981:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 374.8871154785156 3 374.887868 1121.64177 NaN NaN NaN NaN NaN NaN NaN 17.26 1 15.745 15.245 16.245 -1.5148 0 0 0 0.18691 1 2497 2497 1.2148 0 1 7689 8607 4755 4759 7944 7944 0.08581863442896065 DRGPGGAWN 9 Unmodified _DRGPGGAWN_ 0 0 0 ENST00000588732.5_1_16:4853794-4854569:-|nuORF ENST00000588732.5_1_16:4853794-4854569:-|nuORF ENST00000588732.5_1_16:4853794-4854569:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2480773925781 2 465.21484 928.415128 NaN NaN NaN NaN NaN NaN NaN 126.96 1 122.26 121.76 122.76 -4.6998 0 0 0 0.23508 1 24424 24424 7.2892 2.0586 1 7690 11575 4756 4760 7945 7945 -0.05194300116056638 DRGTGKCL 8 Unmodified _DRGTGKCL_ 0 0 0 ENSG00000164283|ENST00000381405|ESM1 ENSG00000164283|ENST00000381405|ESM1 ENSG00000164283|ENST00000381405|ESM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2366943359375 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 71.636 1 68.098 67.598 68.598 -3.5385 0 0 0 0.21323 1 13581 13581 14.582 2.0501 1 7691 5527 4757 4761 7946 7946 -0.012835877026191156 DRHEPMCA 8 Unmodified _DRHEPMCA_ 0 0 0 REV__nc|ENSG00000003402|O15519-4|CFLAR REV__nc|ENSG00000003402|O15519-4|CFLAR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.1338806152344 3 320.133833 957.37967 NaN NaN NaN NaN NaN NaN NaN 139.01 1 134.06 133.56 134.56 -4.952 0 0 0 0.21486 1 26740 26740 0.45834 0 1 + 7692 13829 4758 4762 7947 7947 -0.10072421959728217 DRHEVYYL 8 Unmodified _DRHEVYYL_ 0 0 0 REV__ENSG00000138078|ENST00000409411|PREPL REV__ENSG00000138078|ENST00000409411|PREPL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7686157226562 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 62.385 1 62.385 61.885 62.885 0 0 0 0 0.21181 1 11979 11979 15.768 2.2603 1 + 7693 16433 4759 4763 7948 7948 -0.023760180791896346 DRHLFNNK 8 Unmodified _DRHLFNNK_ 0 0 0 REV__CDK13|p.K831N|1|0.46|ENSG00000065883|chr7:40045975-40045975|G/T|missense_variant REV__CDK13|p.K831N|1|0.46|ENSG00000065883|chr7:40045975-40045975|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.272216796875 2 522.27269 1042.53083 NaN NaN NaN NaN NaN NaN NaN 173.49 1 173.49 172.99 173.99 0 0 0 0 0.23487 1 35880 35880 0.12286 0 1 + 7694 13353 4760 4764 7949 7949 0.01126223734809173 DRIRWRRWRLE 11 Unmodified _DRIRWRRWRLE_ 0 0 0 ENST00000256858.10_2_18:59854532-59854781:+|nuORF ENST00000256858.10_2_18:59854532-59854781:+|nuORF ENST00000256858.10_2_18:59854532-59854781:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7799682617188 3 547.97808 1640.91241 0.32561 0.00017843 0.40769 0.00022341 0.7333 0.00040183 547.9788187607566 125.08 0.17628 125.08 124.94 125.11 0 6 4 2 0 0 0 0.96216 1 24654 24654 1.3296 0.87513 1 1193500 7695 8260 4761 4765 7950 7950 0.11759011428148369 DRIYQNGTK 9 Unmodified _DRIYQNGTK_ 0 0 0 REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|9|1|sense REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|9|1|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.775390625 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 156.38 1 151.59 151.09 152.09 -4.7885 0 0 0 0.19669 1 31096 31096 1.2148 0.80657 1 + 7696 23746 4762 4766 7951 7951 0.008587693238041538 DRKIIMWDHDL 11 Unmodified _DRKIIMWDHDL_ 0 0 0 EML4|p.L535M|1|0.25|ENSG00000143924|chr2:42301354-42301354|C/A|missense_variant EML4|p.L535M|1|0.25|ENSG00000143924|chr2:42301354-42301354|C/A|missense_variant EML4|p.L535M|1|0.25|ENSG00000143924|chr2:42301354-42301354|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2451477050781 3 481.246733 1440.71837 NaN NaN NaN NaN NaN NaN NaN 72.921 1 69.61 69.11 70.11 -3.3107 0 0 0 0.22632 1 14213 14213 3.0723 3.0461 1 7697 941 4763 4767 7952 7952 0.015638741572047365 DRKIQVKWRRR 11 Unmodified _DRKIQVKWRRR_ 0 0 0 REV__ENSG00000099139|ENST00000674117|PCSK5 REV__ENSG00000099139|ENST00000674117|PCSK5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 514.3228759765625 3 514.314692 1539.92225 NaN NaN NaN NaN NaN NaN NaN 172.02 1 167.23 166.73 167.73 -4.7898 0 0 0 0.22632 1 35015 35015 0.026206 0 1 + 7698 14629 4764 4768 7953 7953 0.1738819943350336 DRKKRERKFYW 11 Unmodified _DRKKRERKFYW_ 0 0 0 ENST00000394507.5_2_7:91870378-91871424:-|nuORF ENST00000394507.5_2_7:91870378-91871424:-|nuORF ENST00000394507.5_2_7:91870378-91871424:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 537.9859619140625 3 537.967069 1610.87938 NaN NaN NaN NaN NaN NaN NaN 176.21 1 176.21 175.71 176.71 0 0 0 0 0.22632 1 36504 36504 0 0 1 7699 9414 4765 4769 7954 7954 0.0983738458546668 DRKSGRAE 8 Unmodified _DRKSGRAE_ 0 0 0 nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1 nc|ENSG00000176884|Q05586-4|GRIN1 nc|ENSG00000176884|Q05586-4|GRIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2336730957031 2 459.741222 917.467892 -0.11634 -5.3488E-05 0.58531 0.00026909 0.46897 0.00021561 459.7414211923907 84.241 2.1503 80.577 79.741 81.892 -3.6641 112 61 2 0 0 0 8448 1 16637 16637 0.62683 0 1 3560400 7700 6484 4766 4770 7955 7955 0.005856579467604206 DRLFLHMVYLS 11 Unmodified _DRLFLHMVYLS_ 0 0 0 ENST00000367941.6_1_6:132781183-132781276:-|nuORF ENST00000367941.6_1_6:132781183-132781276:-|nuORF ENST00000367941.6_1_6:132781183-132781276:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2491760253906 3 465.248074 1392.72239 NaN NaN NaN NaN NaN NaN NaN 177.04 1 177.04 176.54 177.54 0 0 0 0 0.22632 1 36673 36673 0.50596 0 1 7701 9086 4767 4771 7956 7956 0.04173963650941914 DRLGKKVK 8 Unmodified _DRLGKKVK_ 0 0 0 FRZB|p.D290G|1|0.13|ENSG00000162998|chr2:182834958-182834958|T/C|missense_variant;ENSG00000162998|ENST00000295113|FRZB FRZB|p.D290G|1|0.13|ENSG00000162998|chr2:182834958-182834958|T/C|missense_variant FRZB|p.D290G|1|0.13|ENSG00000162998|chr2:182834958-182834958|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.206298828125 3 315.206426 942.597449 NaN NaN NaN NaN NaN NaN NaN 86.153 1 82.203 81.703 82.703 -3.9503 0 0 0 0.21486 1 16395 16395 1.4819 0 1 7702 5390 4768 4772 7957 7957 0.12385459296706358 DRPLPVSRLV 10 Unmodified _DRPLPVSRLV_ 0 0 0 ENST00000526443.5_1_11:14535901-14541492:-|nuORF;ENST00000528307.5_1_11:14535901-14541893:-|nuORF;ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1 ENST00000526443.5_1_11:14535901-14541492:-|nuORF ENST00000526443.5_1_11:14535901-14541492:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3270263671875 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 159.26 1 154.47 153.97 154.97 -4.7952 0 0 0 2.8426 1 31665 31665 1.9064 0 1 7703 3555 4769 4773 7958 7958 0.11292785042655851 DRPRDWYRRMF 11 Unmodified _DRPRDWYRRMF_ 0 0 0 ENSG00000120896|ENST00000240123|SORBS3;ENST00000523402.5_1_8:22411983-22419017:+|nuORF;ENST00000517535.5_1_8:22411983-22423386:+|nuORF ENSG00000120896|ENST00000240123|SORBS3 ENSG00000120896|ENST00000240123|SORBS3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2757568359375 3 533.265009 1596.7732 NaN NaN NaN NaN NaN NaN NaN 152.79 1 147.57 147.07 148.07 -5.2209 0 0 0 0.22632 1 29613 29613 0.094841 0.068635 1 7704 3160 4770 4774 7959 7959 -0.001316942515586561 DRRQYFLVY 9 Unmodified _DRRQYFLVY_ 0 0 0 REV__ENSG00000114316|ENST00000265560|USP4 REV__ENSG00000114316|ENST00000265560|USP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.763427734375 2 630.330205 1258.64586 NaN NaN NaN NaN NaN NaN NaN 31.988 1 29.757 29.257 30.257 -2.2305 0 0 0 0.23508 1 5818 5818 7.9102 1.7044 1 + 7705 15368 4771 4775 7960 7960 0.026879081459355803 DRRRNPRRFQY 11 Unmodified _DRRRNPRRFQY_ 0 0 0 nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL;ENST00000502438.6_1_16:1449373-1453182:-|nuORF;ENST00000509981.1_1_16:1447085-1449499:-|nuORF nc|ENSG00000059145|Q9H9P5-5|UNKL nc|ENSG00000059145|Q9H9P5-5|UNKL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2711791992188 3 521.950301 1562.82907 -0.054273 -2.8328E-05 0.83467 0.00043566 0.7804 0.00040733 521.950930702307 45.537 0.21 42.67 42.537 42.747 -2.8666 7 5 2 0 0 0 0.89134 1 8259 8259 0.094841 0 1 1179700 7706 1297 4772 4776 7961 7961 0.07017274980307775 DRRTMMGE 8 Unmodified _DRRTMMGE_ 0 0 0 REV__ENST00000319283.7_1_3:39149466-39149664:-|nuORF REV__ENST00000319283.7_1_3:39149466-39149664:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.144775390625 3 332.484755 994.432434 -0.11294 -3.7551E-05 0.44441 0.00014776 0.33147 0.00011021 332.48354095726836 48.238 0.87801 48.238 47.858 48.736 0 70 24 4 0 0 0 8448 1 9093 9093 3.5871 0 1 4867300 + 7707 20538 4773 4777 7962 7962 -0.0650046389689578 DRSFRWKYHQF 11 Unmodified _DRSFRWKYHQF_ 0 0 0 ENST00000568818.1_1_16:69964069-69965708:+|nuORF;nc|ENSG00000198373|O00308-3|WWP2;nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2 ENST00000568818.1_1_16:69964069-69965708:+|nuORF ENST00000568818.1_1_16:69964069-69965708:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3914794921875 2 785.389116 1568.76368 NaN NaN NaN NaN NaN NaN NaN 14.437 1 13.323 12.823 13.823 -1.1142 0 0 0 0.22632 1 2164 2164 0.094841 0.094841 1 7708 7446 4774 4778 7963 7963 0.0020486073458414467 DRSFRWKYHQF 11 Unmodified _DRSFRWKYHQF_ 0 0 0 ENST00000568818.1_1_16:69964069-69965708:+|nuORF;nc|ENSG00000198373|O00308-3|WWP2;nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2 ENST00000568818.1_1_16:69964069-69965708:+|nuORF ENST00000568818.1_1_16:69964069-69965708:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.392578125 2 785.389116 1568.76368 NaN NaN NaN NaN NaN NaN NaN 139.35 1 134.71 134.21 135.21 -4.6439 0 0 0 0.22632 1 27512 27512 0.50596 0.41111 1 7709 7446 4774 4778 7964 7964 0.0020486073458414467 DRTFLKQHP 9 Unmodified _DRTFLKQHP_ 0 0 0 REV__nc|ENSG00000173480|Q8TAU3-2|ZNF417 REV__nc|ENSG00000173480|Q8TAU3-2|ZNF417 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2079772949219 3 381.208607 1140.60399 NaN NaN NaN NaN NaN NaN NaN 81.977 1 78.138 77.638 78.638 -3.8392 0 0 0 0.23508 1 15569 15569 4.5289 0.33936 1 + 7710 18356 4775 4779 7965 7965 0.039313524574026815 DRTLQIGLY 9 Unmodified _DRTLQIGLY_ 0 0 0 REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|159|3|sense;REV__nc|ENSG999|O00370|L1_ORF2 REV__nc|ENSG999|O00370|L1_ORF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 84.505 1 84.505 84.005 85.005 0 0 0 0 0.23508 1 16485 16485 4.5289 0.58447 1 + 7711 24337;23772 4776 4780 7966 7966 0.0461712798901317 DRTSKAINDIQ 11 Unmodified _DRTSKAINDIQ_ 0 0 0 REV__ENSG00000269526|ENST00000602168|ERVV-1 REV__ENSG00000269526|ENST00000602168|ERVV-1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7611694335938 2 630.830766 1259.64698 NaN NaN NaN NaN NaN NaN NaN 128.28 1 123.54 123.04 124.04 -4.7408 0 0 0 0.22632 1 24682 24682 0.58532 0.41332 1 + 7712 19909 4777 4781 7967 7967 0.027540777241711112 DRVKVEGEL 9 Unmodified _DRVKVEGEL_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;SYNE1|p.I2756*|1|0.12|ENSG00000131018|chr6:152387293-152387293|T/-|frameshift_variant;SYNE1|p.N2333Kfs*2|1|0.32|ENSG00000131018|chr6:152401168-152401169|-/T|frameshift_variant;SYNE1|p.S2126Pfs*10|1|0.33|ENSG00000131018|chr6:152409564-152409564|A/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-6|SYNE1;SYNE1|p.M2832Nfs*53|1|0.25|ENSG00000131018|chr6:152385831-152385832|-/T|frameshift_variant ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2647705078125 2 522.787838 1043.56112 -0.70523 -0.00036869 0.50938 0.0002663 -0.19585 -0.00010239 522.7881919884721 79.184 0.51789 75.379 75.128 75.646 -3.8048 23 14 2 0 0 0 0.4376 1 15047 15047 2.6312 0 1 1985800 7713 3655 4778 4782 7968 7968 0.04108537609340601 DRVLTPPM 8 Unmodified _DRVLTPPM_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI;ENST00000509485.5_1_5:135390439-135392141:+|nuORF ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2503356933594 2 464.74967 927.484787 -0.11177 -5.1946E-05 -0.43366 -0.00020154 -0.54543 -0.00025349 464.74949706583493 114.5 0.67267 110.03 109.79 110.46 -4.4726 32 18 2 0 0 0 8448 1 22538 22538 6.2058 5.9543 1 2074600 7714 3150 4779 4783 7969 7969 0.018144425083505666 DRWAAPLS 8 Unmodified _DRWAAPLS_ 0 0 0 PABPN1|p.R289Gfs*24|1|0.28|ENSG00000100836|chr14:23324270-23324270|C/-|frameshift_variant PABPN1|p.R289Gfs*24|1|0.28|ENSG00000100836|chr14:23324270-23324270|C/-|frameshift_variant PABPN1|p.R289Gfs*24|1|0.28|ENSG00000100836|chr14:23324270-23324270|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2371826171875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 126.28 1 126.28 125.78 126.78 0 0 0 0 0.21486 1 24919 24919 11.64 0.52583 1 7715 12747 4780 4784 7970 7970 0.00036345066178000707 DRYEGEKPT 9 Unmodified _DRYEGEKPT_ 0 0 0 REV__MCTP1|p.S388Y|1|0.22|ENSG00000175471|chr5:94940094-94940094|G/T|missense_variant REV__MCTP1|p.S388Y|1|0.22|ENSG00000175471|chr5:94940094-94940094|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7742919921875 2 547.759278 1093.504 0.1095 5.9979E-05 1.4761 0.00080854 1.5856 0.00086852 547.7601973456972 41.783 0.38011 39.177 38.98 39.36 -2.606 24 10 3 0 0 0 0.73268 1 7486 7486 24.021 9.6152 1 3170000 + 7716 23837 4781 4785 7971 7971 -0.03900929667042874 DRYYREVWSKY 11 Unmodified _DRYYREVWSKY_ 0 0 0 REV__ENSG00000130827|ENST00000369682|PLXNA3 REV__ENSG00000130827|ENST00000369682|PLXNA3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2715454101562 3 522.256285 1563.74703 NaN NaN NaN NaN NaN NaN NaN 50.119 1 47.12 46.62 47.62 -2.999 0 0 0 0.22632 1 9175 9175 0.026206 0 1 + 7717 16035 4782 4786 7972 7972 -0.012296849420181388 DSAGAAPRAAG 11 Unmodified _DSAGAAPRAAG_ 0 0 0 ENST00000275521.10_1_7:45960389-45960869:-|nuORF ENST00000275521.10_1_7:45960389-45960869:-|nuORF ENST00000275521.10_1_7:45960389-45960869:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1788635253906 3 315.157912 942.451907 NaN NaN NaN NaN NaN NaN NaN 32.025 1 32.025 31.525 32.525 0 0 0 0 0.23698 1 5803 5803 0.50596 0.047615 1 7718 8426 4783 4787 7973 7973 -0.021620482901539617 DSAIDILSF 9 Unmodified _DSAIDILSF_ 0 0 0 MYH3|p.G341S|1|0.35|ENSG00000109063|chr17:10645827-10645827|C/T|missense_variant MYH3|p.G341S|1|0.35|ENSG00000109063|chr17:10645827-10645827|C/T|missense_variant MYH3|p.G341S|1|0.35|ENSG00000109063|chr17:10645827-10645827|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2634582519531 2 490.75039 979.486227 0.25127 0.00012331 0.019799 9.7164E-06 0.27107 0.00013303 490.7503591307127 124.9 1.0515 120.3 119.85 120.9 -4.5984 68 29 3 0 0 0 0.095051 1 24689 24689 57.471 5.203 1 13947000 7719 12184 4784 4788 7974 7974 -0.0043364492189539305 DSAKGGVK 8 Unmodified _DSAKGGVK_ 0 0 0 ENST00000481470.5_1_3:58118395-58154450:+|nuORF ENST00000481470.5_1_3:58118395-58154450:+|nuORF ENST00000481470.5_1_3:58118395-58154450:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21014404296875 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 84.236 1 80.525 80.025 81.025 -3.7117 0 0 0 0.23487 1 16086 16086 0.25148 0 1 7720 10375 4785 4789 7975 7975 0.018129672835243582 DSALHDLLY 9 Unmodified _DSALHDLLY_ 0 0 0 REV__ENST00000477418.2_1_1:27206170-27212721:-|nuORF REV__ENST00000477418.2_1_1:27206170-27212721:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6909790039062 2 523.761289 1045.50803 NaN NaN NaN NaN NaN NaN NaN 83.049 1 83.049 82.549 83.549 0 0 0 0 0.05839 1 16190 16190 48.346 6.2513 1 + 7721 16687 4786 4790 7976 7976 -0.012908401733284336 DSANMNDDIT 10 Unmodified _DSANMNDDIT_ 0 0 0 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.8570251464844 3 365.813482 1094.41862 NaN NaN NaN NaN NaN NaN NaN 108.89 1 104.51 104.01 105.01 -4.3776 0 0 0 2.8426 1 21459 21459 0.043787 0 1 7722 838 4787 4791 7977 7977 -0.12481462915047814 DSASKGETY 9 Unmodified _DSASKGETY_ 0 0 0 nc|nan|Q7Z7L8|C11orf96 nc|nan|Q7Z7L8|C11orf96 nc|nan|Q7Z7L8|C11orf96 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74072265625 2 479.211629 956.408705 -0.0051764 -2.4806E-06 1.1952 0.00057273 1.19 0.00057025 479.2121574695787 36.588 0.84237 36.588 36.317 37.16 0 38 23 2 0 0 0 0.74655 1 6792 6792 21.747 4.6338 1 1612100 7723 12671 4788 4792 7978 7978 -0.07124282858080733 DSDDDDDEDY 10 Unmodified _DSDDDDDEDY_ 0 0 0 REV__ENSG00000188613|ENST00000425699|NANOS1 REV__ENSG00000188613|ENST00000425699|NANOS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2764282226562 2 602.175834 1202.33712 NaN NaN NaN NaN NaN NaN NaN 121.66 1 121.66 121.16 122.16 0 0 0 0 0.22588 1 23981 23981 0.45834 0 1 + 7724 19159 4789 4793 7979 7979 -0.2559591186391117 DSDDDDDEDY 10 Unmodified _DSDDDDDEDY_ 0 0 0 REV__ENSG00000188613|ENST00000425699|NANOS1 REV__ENSG00000188613|ENST00000425699|NANOS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2966918945312 2 602.175834 1202.33712 NaN NaN NaN NaN NaN NaN NaN 121.68 1 121.68 121.18 122.18 0 0 0 0 0.22588 1 23986 23986 0.45834 0.057624 1 + 7725 19159 4789 4793 7980 7980 -0.2559591186391117 DSDDECDDGDC 11 Unmodified _DSDDECDDGDC_ 0 0 0 REV__LRP4|p.N94del|1|0.47|ENSG00000134569|chr11:46900296-46900298|GTT/-|inframe_deletion REV__LRP4|p.N94del|1|0.47|ENSG00000134569|chr11:46900296-46900298|GTT/-|inframe_deletion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 594.522705078125 2 594.650615 1187.28668 NaN NaN NaN NaN NaN NaN NaN 170.35 1 165.47 164.97 165.97 -4.873 0 0 0 0.22632 1 33705 33705 0 0 1 + 7726 23816 4790 4794 7981 7981 -0.29947480784903746 DSDEMPSECI 10 Unmodified _DSDEMPSECI_ 0 0 0 ENST00000533834.1_1_1:104080032-104087738:+|nuORF;nc|ENSG00000185946|Q96LT9-2|RNPC3;ENSG00000185946|ENST00000423855|RNPC3 ENST00000533834.1_1_1:104080032-104087738:+|nuORF ENST00000533834.1_1_1:104080032-104087738:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.219970703125 3 375.80734 1124.40019 -0.50399 -0.0001894 0.90092 0.00033857 0.39693 0.00014917 375.80767579706776 76.372 1.4958 72.739 72.171 73.667 -3.6337 53 42 2 0 0 0 0.91149 1 14521 14521 3.8763 3.8763 1 1279900 7727 7021 4791 4795 7982 7982 -0.15703340881236727 DSDETRVLF 9 Unmodified _DSDETRVLF_ 0 0 0 REV__tr|U7STK8|U7STK8_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01522PE=3SV=1 REV__tr|U7STK8|U7STK8_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01522PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2630615234375 2 541.261653 1080.50875 0.080655 4.3655E-05 0.28145 0.00015234 0.3621 0.00019599 541.2624079180208 57.006 0.73027 54.111 53.718 54.448 -2.8944 32 20 3 0 0 0 0.46541 1 10938 10938 21.747 4.6338 1 1186400 + 7728 25111 4792 4796 7983 7983 -0.028280455243020697 DSDETRVLF 9 Unmodified _DSDETRVLF_ 0 0 0 REV__tr|U7STK8|U7STK8_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01522PE=3SV=1 REV__tr|U7STK8|U7STK8_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01522PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2630615234375 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 57.218 1 54.028 53.528 54.528 -3.1895 0 0 0 0.20628 1 10620 10620 21.747 1.293 1 + 7729 25111 4792 4796 7984 7984 -0.028280455243020697 DSDETRVLF 9 Unmodified _DSDETRVLF_ 0 0 0 REV__tr|U7STK8|U7STK8_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01522PE=3SV=1 REV__tr|U7STK8|U7STK8_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01522PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26220703125 2 541.261653 1080.50875 0.13655 7.3911E-05 1.1169 0.00060456 1.2535 0.00067847 541.2625147130084 57.552 0.71692 54.347 53.829 54.546 -3.2052 28 19 2 0 0 0 0.46541 1 10666 10666 21.747 1.293 1 763420 + 7730 25111 4792 4796 7985 7985 -0.028280455243020697 DSDFRKDDFY 10 Unmodified _DSDFRKDDFY_ 0 0 0 ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT ENST00000549192.5_1_12:95650374-95690042:+|nuORF ENST00000549192.5_1_12:95650374-95690042:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2355651855469 3 436.522808 1306.5466 0.063435 2.7691E-05 -0.17663 -7.7105E-05 -0.1132 -4.9414E-05 436.52269990820287 71.752 1.1214 71.752 71.316 72.438 0 106 31 5 0 0 0 0.34922 3 13887 13887;13946;13979 34.222 24.978 1 86993000 7731 1148 4793 4797 7986;7987;7988 7986 -0.09441579329472916 DSDFRKDDFY 10 Unmodified _DSDFRKDDFY_ 0 0 0 ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT ENST00000549192.5_1_12:95650374-95690042:+|nuORF ENST00000549192.5_1_12:95650374-95690042:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22857666015625 3 436.522808 1306.5466 0.074285 3.2427E-05 -0.20267 -8.8469E-05 -0.12838 -5.6042E-05 436.5226871861513 75.849 0.99824 72.127 71.688 72.686 -3.7227 100 28 5 0 0 0 0.0077871 1 14354 14354 98.501 90.056 1 61230000 7732 1148 4793 4797 7989 7989 -0.09441579329472916 DSDHWAPIHY 10 Unmodified _DSDHWAPIHY_ 0 0 0 ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-2|KRIT1 ENST00000486261.5_1_7:91830052-91864980:-|nuORF ENST00000486261.5_1_7:91830052-91864980:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 414.2491760253906 3 414.184238 1239.53089 -0.15994 -6.6246E-05 0.19091 7.9073E-05 0.030969 1.2827E-05 414.18427920562135 99.493 0.73117 95.536 95.172 95.904 -3.9564 56 20 4 0 0 0 0.91149 1 19065 19065 3.8763 1.1411 1 7070200 7733 960 4794 4798 7990 7990 -0.07929821055859065 DSDHWAPIHY 10 Unmodified _DSDHWAPIHY_ 0 0 0 ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-2|KRIT1 ENST00000486261.5_1_7:91830052-91864980:-|nuORF ENST00000486261.5_1_7:91830052-91864980:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 414.184238 1239.53089 -0.10812 -4.478E-05 -0.0068948 -2.8557E-06 -0.11501 -4.7636E-05 414.18419413781766 95.452 0.62209 95.452 95.109 95.731 0 -0.095797 7.8871E-06 NaN 3.8763 32 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4887000 7734 960 4794 4798 -0.07929821055859065 DSDHWAPIHY 10 Unmodified _DSDHWAPIHY_ 0 0 0 ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-2|KRIT1 ENST00000486261.5_1_7:91830052-91864980:-|nuORF ENST00000486261.5_1_7:91830052-91864980:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 414.184238 1239.53089 -0.14247 -5.9008E-05 0.12624 5.2287E-05 -0.016227 -6.7211E-06 414.18422250173666 99.831 0.73485 95.698 95.267 96.002 -4.1326 0.15004 0.00017331 NaN 3.8763 57 20 4 NaN NaN NaN NaN 0 NaN NaN 0 10159000 7735 960 4794 4798 -0.07929821055859065 DSDHWAPIHY 10 Unmodified _DSDHWAPIHY_ 0 0 0 ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-2|KRIT1 ENST00000486261.5_1_7:91830052-91864980:-|nuORF ENST00000486261.5_1_7:91830052-91864980:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 414.184238 1239.53089 0.22808 9.4466E-05 -0.37597 -0.00015572 -0.14789 -6.1254E-05 414.184063182334 99.803 0.74757 95.506 95.173 95.92 -4.297 -0.042123 -0.0004507 NaN 3.8763 52 21 3 NaN NaN NaN NaN 0 NaN NaN 0 7659100 7736 960 4794 4798 -0.07929821055859065 DSDKRLKWR 9 Unmodified _DSDKRLKWR_ 0 0 0 REV__SOX4|p.L100R|1|0.18|ENSG00000124766|chr6:21594833-21594833|T/G|missense_variant REV__SOX4|p.L100R|1|0.18|ENSG00000124766|chr6:21594833-21594833|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2847900390625 2 602.333279 1202.652 NaN NaN NaN NaN NaN NaN NaN 80 1 76.195 75.695 76.695 -3.8048 0 0 0 0.1963 1 15181 15181 0.0033805 0.0019993 1 + 7737 24668 4795 4799 7991 7991 0.05878426377466894 DSDLRNDSY 9 Unmodified _DSDLRNDSY_ 0 0 0 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10;MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7827758789062 2 542.730717 1083.44688 0.60548 0.00032861 -0.16976 -9.2133E-05 0.43572 0.00023648 542.7306111584516 30.927 0.94563 28.852 28.429 29.374 -2.0743 72 26 4 0 0 0 0.037046 1 5291 5291 93.166 58.764 1 5663400 7738 1579 4796 4800 7992 7992 -0.09150396943414307 DSDLRNDSY 9 Unmodified _DSDLRNDSY_ 0 0 0 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10;MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.730717 1083.44688 0.37807 0.00020519 -0.083295 -4.5207E-05 0.29478 0.00015999 542.7306864861105 28.802 0.94433 28.802 28.525 29.469 0 -0.018423 1.0032E-05 NaN 93.166 55 26 3 NaN NaN NaN NaN 0 NaN NaN 0 6322700 7739 1579 4796 4800 -0.09150396943414307 DSDLRNDSY 9 Unmodified _DSDLRNDSY_ 0 0 0 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10;MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.730717 1083.44688 0.62211 0.00033764 -0.36489 -0.00019804 0.25722 0.0001396 542.7305083469347 30.935 1.0193 28.818 28.259 29.278 -2.1167 -0.0022187 -0.00029563 NaN 93.166 82 28 4 NaN NaN NaN NaN 0 NaN NaN 0 7072600 7740 1579 4796 4800 -0.09150396943414307 DSDLRNDSY 9 Unmodified _DSDLRNDSY_ 0 0 0 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10;MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.730717 1083.44688 0.32952 0.00017884 0.28095 0.00015248 0.61047 0.00033132 542.7308989240943 30.818 0.95039 28.809 28.369 29.319 -2.0095 -0.011405 0.00040541 NaN 93.166 64 26 3 NaN NaN NaN NaN 0 NaN NaN 0 7608700 7741 1579 4796 4800 -0.09150396943414307 DSDMQTLVY 9 Oxidation (M) _DSDM(Oxidation (M))QTLVY_ DSDM(1)QTLVY DSDM(120)QTLVY 0 0 1 ENSG00000149823|ENST00000279281|VPS51 ENSG00000149823|ENST00000279281|VPS51 ENSG00000149823|ENST00000279281|VPS51 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7741088867188 2 544.234247 1086.45394 0.29844 0.00016242 -0.60097 -0.00032707 -0.30252 -0.00016464 544.2339676941126 72.44 2.1647 72.44 71.917 74.082 0 153 61 4 0 0 0 0.02872 1 14041 14041 115.69 77.718 1 55304000 7742 4813 4797 4801 7993 7993 75 -0.08582800387216594 DSDMQTLVY 9 Oxidation (M) _DSDM(Oxidation (M))QTLVY_ DSDM(1)QTLVY DSDM(120)QTLVY 0 0 1 ENSG00000149823|ENST00000279281|VPS51 ENSG00000149823|ENST00000279281|VPS51 ENSG00000149823|ENST00000279281|VPS51 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.789306640625 2 544.234247 1086.45394 0.17936 9.7611E-05 -0.25955 -0.00014126 -0.080195 -4.3645E-05 544.2341711246431 76.055 2.5292 72.64 71.984 74.513 -3.4151 196 71 4 0 0 0 0.02872 1 14852 14852 115.69 69.671 1 43780000 7743 4813 4797 4801 7994 7994 75 -0.08582800387216594 DSDMQTLVY 9 Oxidation (M) _DSDM(Oxidation (M))QTLVY_ DSDM(1)QTLVY DSDM(120)QTLVY 0 0 1 ENSG00000149823|ENST00000279281|VPS51 ENSG00000149823|ENST00000279281|VPS51 ENSG00000149823|ENST00000279281|VPS51 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7815551757812 2 544.234247 1086.45394 0.093697 5.0993E-05 -0.073019 -3.974E-05 0.020677 1.1253E-05 544.2342547483831 76.491 2.5718 72.769 72.068 74.64 -3.7227 200 73 4 0 0 0 0.02872 1 14443 14443 115.69 60.918 1 28760000 7744 4813 4797 4801 7995 7995 75 -0.08582800387216594 DSDNRRIIRY 10 Unmodified _DSDNRRIIRY_ 0 0 0 ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2 ENSG00000138757|ENST00000359707|G3BP2 ENSG00000138757|ENST00000359707|G3BP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2323913574219 3 436.565342 1306.6742 0.22463 9.8064E-05 -0.44689 -0.0001951 -0.22226 -9.7033E-05 436.56519927377394 37.078 0.62044 37.078 36.743 37.363 0 50 17 4 0 0 0 0.73657 1 6831 6831 7.4771 0 1 8334900 7745 4207 4798 4802 7996 7996 0.03312606055237666 DSDPDRLTY 9 Unmodified _DSDPDRLTY_ 0 0 0 ENST00000532320.5_1_11:771189-774104:-|nuORF ENST00000532320.5_1_11:771189-774104:-|nuORF ENST00000532320.5_1_11:771189-774104:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2621459960938 2 541.24346 1080.47237 0.27832 0.00015064 -0.82094 -0.00044433 -0.54263 -0.00029369 541.2436030706044 53.921 0.71193 53.921 53.674 54.386 0 34 19 3 0 0 0 0.26627 1 10283 10283 45.74 20.341 1 1262500 7746 10981 4799 4803 7997 7997 -0.0646492242099157 DSDSDSDDEC 10 Unmodified _DSDSDSDDEC_ 0 0 0 ENST00000532162.5_1_11:8715645-8720554:-|nuORF;nc|ENSG00000166444|P78524-3|DENND2B;nc|ENSG00000166444|P78524-2|DENND2B;ENSG00000166444|ENST00000313726|DENND2B ENST00000532162.5_1_11:8715645-8720554:-|nuORF ENST00000532162.5_1_11:8715645-8720554:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7902221679688 2 544.153848 1086.29314 0.1301 7.0794E-05 -0.76008 -0.0004136 -0.62998 -0.0003428 544.6538127664274 146.3 0.20876 141.19 141 141.21 -5.1108 6 5 2 0 0 0 1.1333 1 28284 28284 0.043787 0 1 2698800 7747 5724 4800 4804 7998 7998 -0.24655219561896047 DSDTLREFV 9 Unmodified _DSDTLREFV_ 0 0 0 ENSG00000155660|ENST00000652332|PDIA4 ENSG00000155660|ENST00000652332|PDIA4 ENSG00000155660|ENST00000652332|PDIA4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2606811523438 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 108.43 1 104.11 103.61 104.61 -4.32 0 0 0 0.20699 1 21365 21365 21.537 4.5947 1 7748 5055 4801 4805 7999 7999 -0.028280455242793323 DSDYHDENMYY 11 Unmodified _DSDYHDENMYY_ 0 0 0 ENST00000551873.5_1_12:70671967-70723208:+|nuORF;ENST00000549443.5_1_12:70671967-70726591:+|nuORF;ENST00000548021.5_1_12:70671967-70729348:+|nuORF;ENST00000547321.5_1_12:70671967-70723393:+|nuORF;nc|ENSG00000111596|Q9NZN8-4|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2;CNOT2-GPCPD1|1|fusion ENST00000551873.5_1_12:70671967-70723208:+|nuORF ENST00000551873.5_1_12:70671967-70723208:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 726.0421752929688 2 726.256439 1450.49832 0.55441 0.00040264 -0.3077 -0.00022347 0.24671 0.00017918 726.2562334978372 71.809 0.5996 68.498 68.141 68.741 -3.3107 27 16 2 0 0 0 0.75285 1 13943 13943 8.1555 6.6736 1 2266400 7749 595 4802 4806 8000 8000 -0.20890441031656337 DSDYHDENMYY 11 Unmodified _DSDYHDENMYY_ 0 0 0 ENST00000551873.5_1_12:70671967-70723208:+|nuORF;ENST00000549443.5_1_12:70671967-70726591:+|nuORF;ENST00000548021.5_1_12:70671967-70729348:+|nuORF;ENST00000547321.5_1_12:70671967-70723393:+|nuORF;nc|ENSG00000111596|Q9NZN8-4|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2;CNOT2-GPCPD1|1|fusion ENST00000551873.5_1_12:70671967-70723208:+|nuORF ENST00000551873.5_1_12:70671967-70723208:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 726.256439 1450.49832 0.53213 0.00038646 0.09552 6.9372E-05 0.62765 0.00045584 726.256334566638 72.102 0.46432 68.475 68.161 68.625 -3.6275 0.044701 0.0003639 NaN 8.1555 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1794200 7750 595 4802 4806 -0.20890441031656337 DSDYHDENMYY 11 Unmodified _DSDYHDENMYY_ 0 0 0 ENST00000551873.5_1_12:70671967-70723208:+|nuORF;ENST00000549443.5_1_12:70671967-70726591:+|nuORF;ENST00000548021.5_1_12:70671967-70729348:+|nuORF;ENST00000547321.5_1_12:70671967-70723393:+|nuORF;nc|ENSG00000111596|Q9NZN8-4|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2;CNOT2-GPCPD1|1|fusion ENST00000551873.5_1_12:70671967-70723208:+|nuORF ENST00000551873.5_1_12:70671967-70723208:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 726.256439 1450.49832 0.56411 0.00040969 -0.34292 -0.00024904 0.2212 0.00016065 726.2565896190957 71.856 0.52379 68.317 68.116 68.64 -3.5385 -0.11266 -0.00027293 NaN 8.1555 25 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1403000 7751 595 4802 4806 -0.20890441031656337 DSDYQRGQLY 10 Unmodified _DSDYQRGQLY_ 0 0 0 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7680053710938 2 622.780741 1243.54693 NaN NaN NaN NaN NaN NaN NaN 58.158 1 55.247 54.747 55.747 -2.9105 0 0 0 0.19165 1 11166 11166 29.841 16.226 1 7752 4776 4803 4807 8001 8001 -0.06510159609592847 DSDYQRGQLY 10 Unmodified _DSDYQRGQLY_ 0 0 0 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7562255859375 2 622.780741 1243.54693 NaN NaN NaN NaN NaN NaN NaN 58.222 1 55.312 54.812 55.812 -2.9105 0 0 0 0.08475 1 11180 11180 74.2 46.976 1 7753 4776 4803 4807 8002 8002 -0.06510159609592847 DSDYQRGQLY 10 Unmodified _DSDYQRGQLY_ 0 0 0 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7801513671875 2 622.780741 1243.54693 NaN NaN NaN NaN NaN NaN NaN 58.251 1 55.34 54.84 55.84 -2.9105 0 0 0 0.012456 1 11186 11186 86.332 49.826 1 7754 4776 4803 4807 8003 8003 -0.06510159609592847 DSDYQRGQLY 10 Unmodified _DSDYQRGQLY_ 0 0 0 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.78076171875 2 622.780741 1243.54693 NaN NaN NaN NaN NaN NaN NaN 58.483 1 55.573 55.073 56.073 -2.9105 0 0 0 0.15215 1 11233 11233 36.506 9.283 1 7755 4776 4803 4807 8004 8004 -0.06510159609592847 DSDYQRGQLY 10 Unmodified _DSDYQRGQLY_ 0 0 0 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7561645507812 2 622.780741 1243.54693 NaN NaN NaN NaN NaN NaN NaN 58.521 1 55.27 54.77 55.77 -3.2517 0 0 0 0.093967 1 10877 10877 60.074 36.284 1 7756 4776 4803 4807 8005 8005 -0.06510159609592847 DSDYQRGQLY 10 Unmodified _DSDYQRGQLY_ 0 0 0 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7805786132812 2 622.780741 1243.54693 NaN NaN NaN NaN NaN NaN NaN 58.609 1 55.357 54.857 55.857 -3.2517 0 0 0 0.058818 1 10893 10893 67.838 44.048 1 7757 4776 4803 4807 8006 8006 -0.06510159609592847 DSDYQRGQLY 10 Unmodified _DSDYQRGQLY_ 0 0 0 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 ENSG00000149218|ENST00000278505|ENDOD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7631225585938 2 622.780741 1243.54693 0.29175 0.0001817 -0.061697 -3.8424E-05 0.23005 0.00014327 622.7806464177486 58.577 0.47895 55.372 55.095 55.574 -3.2052 19 13 2 0 0 0 0.076343 3 10926 10903;10926;10953 70.332 40.491 1 538860 7758 4776 4803 4807 8007;8008;8009 8008 -0.06510159609592847 DSECMRYIA 9 Unmodified _DSECMRYIA_ 0 0 0 nc|ENSG00000132466|O75179-7|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17 nc|ENSG00000132466|O75179-7|ANKRD17 nc|ENSG00000132466|O75179-7|ANKRD17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78466796875 2 544.230984 1086.44742 -0.0039422 -2.1455E-06 2.4326 0.0013239 2.4287 0.0013217 544.2340839095348 23.871 0.31087 22.337 22.159 22.47 -1.5342 22 8 4 0 0 0 0.65319 1 3881 3881 0.073264 0 1 624590 7759 12326 4804 4808 8010 8010 -0.09235016819570774 DSEEEWNRD 9 Unmodified _DSEEEWNRD_ 0 0 0 ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2711181640625 2 590.231081 1178.44761 NaN NaN NaN NaN NaN NaN NaN 81.97 1 78.282 77.782 78.782 -3.6879 0 0 0 0.1963 1 15624 15624 0.073264 0.029476 1 7760 5513 4805 4809 8011 8011 -0.13447602294377248 DSELDEHI 8 Unmodified _DSELDEHI_ 0 0 0 SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant;ENSG00000164483|ENST00000439090|SAMD3;nc|ENSG00000164483|Q8N6K7-3|SAMD3;SAMD3|p.L362Wfs*9|1|0.5|ENSG00000164483|chr6:130146120-130146120|A/-|frameshift_variant SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7417907714844 2 479.211629 956.408705 -0.28212 -0.0001352 0.84381 0.00040436 0.56168 0.00026917 479.212264354656 39.094 0.84695 36.545 36.259 37.106 -2.5491 40 23 3 0 0 0 0.74718 1 7346 7346 18.135 0 1 1762000 7761 5548 4806 4810 8012 8012 -0.07124282858092101 DSENQRLAY 9 Unmodified _DSENQRLAY_ 0 0 0 ENST00000447755.1_1_2:196859457-196859526:-|nuORF;nc|ENSG00000112242|O00716-2|E2F3;ENSG00000112242|ENST00000346618|E2F3 ENST00000447755.1_1_2:196859457-196859526:-|nuORF ENST00000447755.1_1_2:196859457-196859526:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.774658203125 2 548.256902 1094.49925 0.46737 0.00025624 -0.20324 -0.00011143 0.26412 0.00014481 548.256765512701 39.626 0.59201 39.626 39.372 39.964 0 27 16 2 0 0 0 0.0024901 1 7383 7383 114.2 72.362 1 5098400 7762 2677 4807 4811 8013 8013 -0.04421813809813102 DSENQRLAY 9 Unmodified _DSENQRLAY_ 0 0 0 ENST00000447755.1_1_2:196859457-196859526:-|nuORF;nc|ENSG00000112242|O00716-2|E2F3;ENSG00000112242|ENST00000346618|E2F3 ENST00000447755.1_1_2:196859457-196859526:-|nuORF ENST00000447755.1_1_2:196859457-196859526:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7742309570312 2 548.256902 1094.49925 0.042553 2.333E-05 0.14797 8.1125E-05 0.19052 0.00010446 548.2570011202507 42.328 0.45901 39.609 39.381 39.84 -2.7191 29 12 3 0 0 0 0.028848 1 7940 7940 88.954 68.5 1 11561000 7763 2677 4807 4811 8014 8014 -0.04421813809813102 DSENQRLAY 9 Unmodified _DSENQRLAY_ 0 0 0 ENST00000447755.1_1_2:196859457-196859526:-|nuORF;nc|ENSG00000112242|O00716-2|E2F3;ENSG00000112242|ENST00000346618|E2F3 ENST00000447755.1_1_2:196859457-196859526:-|nuORF ENST00000447755.1_1_2:196859457-196859526:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7742309570312 2 548.256902 1094.49925 -0.032122 -1.7611E-05 -0.22674 -0.00012431 -0.25886 -0.00014192 548.2569663763339 42.296 0.70282 39.646 39.321 40.024 -2.651 41 19 3 0 0 0 0.028245 1 7606 7606 99.799 69.162 1 6212300 7764 2677 4807 4811 8015 8015 -0.04421813809813102 DSENQRLAY 9 Unmodified _DSENQRLAY_ 0 0 0 ENST00000447755.1_1_2:196859457-196859526:-|nuORF;nc|ENSG00000112242|O00716-2|E2F3;ENSG00000112242|ENST00000346618|E2F3 ENST00000447755.1_1_2:196859457-196859526:-|nuORF ENST00000447755.1_1_2:196859457-196859526:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7744750976562 2 548.256902 1094.49925 0.088686 4.8623E-05 -0.18426 -0.00010102 -0.095577 -5.2401E-05 548.2567908771721 42.176 0.67989 39.57 39.36 40.04 -2.606 39 18 3 0 0 0 0.14998 1 7617 7617 43.772 22.901 1 7108000 7765 2677 4807 4811 8016 8016 -0.04421813809813102 DSESSGVLY 9 Unmodified _DSESSGVLY_ 0 0 0 nc|ENSG00000176390|Q8IUI8-2|CRLF3;ENSG00000176390|ENST00000324238|CRLF3 nc|ENSG00000176390|Q8IUI8-2|CRLF3 nc|ENSG00000176390|Q8IUI8-2|CRLF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7373046875 2 478.714005 955.413456 -0.026539 -1.2705E-05 -0.031062 -1.487E-05 -0.057601 -2.7574E-05 478.71393878271743 67.4 1.4883 64.292 63.514 65.003 -3.1086 64 42 2 0 0 0 0.11968 1 13020 13020 24.882 20.405 1 1941000 7766 6462 4808 4812 8017 8017 -0.06603398715310504 DSFCCCFC 8 Unmodified _DSFCCCFC_ 0 0 0 L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|252|2|anti-sense L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|252|2|anti-sense L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|252|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 464.1252136230469 2 464.128827 926.243102 NaN NaN NaN NaN NaN NaN NaN 30.871 1 28.845 28.345 29.345 -2.0264 0 0 0 0.21486 1 5309 5309 0 0 1 7767 12059 4809 4813 8018 8018 -0.22296995506110306 DSFFPMDDMF 10 Unmodified _DSFFPMDDMF_ 0 0 0 ENSG00000214842|ENST00000399080|RAD51AP2;RAD51AP2|p.V876Dfs*5|1|0.03|ENSG00000214842|chr2:17515789-17515790|-/CTGGT|frameshift_variant ENSG00000214842|ENST00000399080|RAD51AP2 ENSG00000214842|ENST00000399080|RAD51AP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 626.2384643554688 2 626.238475 1250.4624 NaN NaN NaN NaN NaN NaN NaN 6.2295 1 6.2295 5.7295 6.7295 0 0 0 0 0.22588 1 441 441 0 0 1 7768 7734 4810 4814 8019 8019 -0.15281569742251122 DSFFRFLY 8 Unmodified _DSFFRFLY_ 0 0 0 ENST00000296015.8_1_3:180319924-180320044:+|nuORF ENST00000296015.8_1_3:180319924-180320044:+|nuORF ENST00000296015.8_1_3:180319924-180320044:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7931518554688 2 547.768917 1093.52328 0.029199 1.5994E-05 0.14718 8.0619E-05 0.17638 9.6614E-05 547.7700265928637 47.449 0.58352 44.507 44.205 44.788 -2.9421 45 16 4 0 0 0 0.76728 1 8597 8597 5.7604 0.52976 1 3846400 7769 8501 4811 4815 8020 8020 -0.019739285854711852 DSFLIIPLM 9 Unmodified _DSFLIIPLM_ 0 0 0 REV__ENST00000367122.6_1_6:158491407-158491521:+|nuORF REV__ENST00000367122.6_1_6:158491407-158491521:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.04473876953125 3 350.196428 1047.56745 NaN NaN NaN NaN NaN NaN NaN 132.62 1 127.98 127.48 128.48 -4.6399 0 0 0 0.23508 1 26146 26146 1.0715 0 1 + 7770 20911 4812 4816 8021 8021 0.04557339516486536 DSFMHSMDP 9 Unmodified _DSFMHSMDP_ 0 0 0 ENST00000441149.6_1_9:131010813-131013220:+|nuORF;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1 ENST00000441149.6_1_9:131010813-131013220:+|nuORF ENST00000441149.6_1_9:131010813-131013220:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2872314453125 2 533.70206 1065.38957 0.25637 0.00013683 0.41986 0.00022408 0.67623 0.00036091 533.7026380826481 98.511 0.62927 98.511 98.054 98.683 0 23 17 2 0 0 0 0.80521 1 19271 19271 10.824 8.9797 1 1264000 7771 2409 4813 4817 8022 8022 -0.14051278745000673 DSGDGCDDNGD 11 Unmodified _DSGDGCDDNGD_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1;REV__LRP1|p.D1283Ifs*50|1|0.09|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant REV__ENSG00000123384|ENST00000243077|LRP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.10443115234375 3 357.105214 1068.29381 NaN NaN NaN NaN NaN NaN NaN 5.4892 1 4.4803 3.9803 4.9803 -1.0089 0 0 0 0.23698 1 252 252 0 0 1 + 7772 15726;23808 4814 4818 8023 8023 -0.23760380122189417 DSGDGCDDNGD 11 Unmodified _DSGDGCDDNGD_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1;REV__LRP1|p.D1283Ifs*50|1|0.09|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant REV__ENSG00000123384|ENST00000243077|LRP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.1046447753906 3 357.105214 1068.29381 NaN NaN NaN NaN NaN NaN NaN 5.8262 1 4.8173 4.3173 5.3173 -1.0089 0 0 0 0.23698 1 311 311 0 0 1 + 7773 15726;23808 4814 4818 8024 8024 -0.23760380122189417 DSGDGCDDNGD 11 Unmodified _DSGDGCDDNGD_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1;REV__LRP1|p.D1283Ifs*50|1|0.09|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant REV__ENSG00000123384|ENST00000243077|LRP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.1048889160156 3 357.105214 1068.29381 NaN NaN NaN NaN NaN NaN NaN 6.7329 1 5.7181 5.2181 6.2181 -1.0148 0 0 0 0.23698 1 472 472 0 0 1 + 7774 15726;23808 4814 4818 8025 8025 -0.23760380122189417 DSGDGCDDNGD 11 Unmodified _DSGDGCDDNGD_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1;REV__LRP1|p.D1283Ifs*50|1|0.09|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant REV__ENSG00000123384|ENST00000243077|LRP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.10406494140625 3 357.105214 1068.29381 NaN NaN NaN NaN NaN NaN NaN 12.974 1 11.854 11.354 12.354 -1.1206 0 0 0 0.23698 1 1596 1596 0 0 1 + 7775 15726;23808 4814 4818 8026 8026 -0.23760380122189417 DSGPGCGP 8 Unmodified _DSGPGCGP_ 0 0 0 REV__ENSG00000181444|ENST00000302017|ZNF467 REV__ENSG00000181444|ENST00000302017|ZNF467 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.1320495605469 2 345.131596 688.248639 NaN NaN NaN NaN NaN NaN NaN 51.543 1 51.543 51.043 52.043 0 0 0 0 0.23664 1 9782 9782 3.2813 0 1 + 7776 18732 4815 4819 8027 8027 -0.10795489336101127 DSGPKLVGT 9 Unmodified _DSGPKLVGT_ 0 0 0 REV__nc|ENSG00000092009|P23946-2|CMA1 REV__nc|ENSG00000092009|P23946-2|CMA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2362976074219 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 70.106 1 70.106 69.606 70.606 0 0 0 0 0.21065 1 13576 13576 20.454 1.0146 1 + 7777 14579 4816 4820 8028 8028 0.019015056264720442 DSGQALEQL 9 Unmodified _DSGQALEQL_ 0 0 0 PEX6|p.F679S|1|0.23|ENSG00000124587|chr6:42966583-42966583|A/G|missense_variant PEX6|p.F679S|1|0.23|ENSG00000124587|chr6:42966583-42966583|A/G|missense_variant PEX6|p.F679S|1|0.23|ENSG00000124587|chr6:42966583-42966583|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23681640625 2 480.735271 959.45599 -0.1468 -7.0571E-05 0.26385 0.00012684 0.11705 5.627E-05 480.73532616234195 51.997 0.86097 49.115 48.697 49.558 -2.8824 75 24 4 0 0 0 0.1629 2 9849 9849;9901 45.7 5.7499 1 23480000 7778 12777 4817 4821 8029;8030 8029 -0.025360035871017317 DSGQALEQL 9 Unmodified _DSGQALEQL_ 0 0 0 PEX6|p.F679S|1|0.23|ENSG00000124587|chr6:42966583-42966583|A/G|missense_variant PEX6|p.F679S|1|0.23|ENSG00000124587|chr6:42966583-42966583|A/G|missense_variant PEX6|p.F679S|1|0.23|ENSG00000124587|chr6:42966583-42966583|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2369384765625 2 480.735271 959.45599 0.069888 3.3598E-05 0.079215 3.8081E-05 0.1491 7.1679E-05 480.7352495051411 52.341 0.84349 49.253 48.845 49.689 -3.0876 57 23 3 0 0 0 0.31598 1 9656 9656 39.95 9.7249 1 15185000 7779 12777 4817 4821 8031 8031 -0.025360035871017317 DSGQALEQL 9 Unmodified _DSGQALEQL_ 0 0 0 PEX6|p.F679S|1|0.23|ENSG00000124587|chr6:42966583-42966583|A/G|missense_variant PEX6|p.F679S|1|0.23|ENSG00000124587|chr6:42966583-42966583|A/G|missense_variant PEX6|p.F679S|1|0.23|ENSG00000124587|chr6:42966583-42966583|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2369384765625 2 480.735271 959.45599 -0.10865 -5.223E-05 0.31727 0.00015252 0.20862 0.00010029 480.7353767990116 52.294 0.93935 49.199 48.716 49.656 -3.0954 71 26 4 0 0 0 0.20546 1 9635 9635 47.749 11.622 1 11542000 7780 12777 4817 4821 8032 8032 -0.025360035871017317 DSGRHHLH 8 Unmodified _DSGRHHLH_ 0 0 0 REV__ENST00000445028.1_1_X:43137608-43138196:-|nuORF REV__ENST00000445028.1_1_X:43137608-43138196:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.1703796386719 3 320.158247 957.45291 NaN NaN NaN NaN NaN NaN NaN 30.347 1 28.454 27.954 28.954 -1.8928 0 0 0 0.23312 1 5199 5199 6.2058 0 1 + 7781 21745 4818 4822 8033 8033 -0.02751789130581983 DSGVTATRL 9 Unmodified _DSGVTATRL_ 0 0 0 REV__nc|ENSG00000162066|Q9Y303-3|AMDHD2 REV__nc|ENSG00000162066|Q9Y303-3|AMDHD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2439880371094 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 174.59 1 169.7 169.2 170.2 -4.8916 0 0 0 0.23508 1 34763 34763 6.2058 1.4498 1 + 7782 24123 4819 4823 8034 8034 0.014560065124328503 DSGYLHLLY 9 Unmodified _DSGYLHLLY_ 0 0 0 nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENST00000525980.5_1_9:134025776-134070755:+|nuORF;NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant nc|ENSG00000126883|P35658-2|NUP214 nc|ENSG00000126883|P35658-2|NUP214 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2677001953125 2 540.771657 1079.52876 0.18428 9.9656E-05 -2.4443 -0.0013218 -2.26 -0.0012221 540.7701380347883 132.07 0.59514 127.43 127.06 127.66 -4.6399 25 16 2 0 0 0 0.44262 1 25974 25974 23.148 1.6114 1 2279800 7783 3454 4820 4824 8035 8035 -0.007822497936558648 DSHPASPY 8 Unmodified _DSHPASPY_ 0 0 0 nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3 nc|ENSG00000151136|A6QL63-2|ABTB3 nc|ENSG00000151136|A6QL63-2|ABTB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2356262207031 2 437.1905 872.366446 NaN NaN NaN NaN NaN NaN NaN 67.01 1 63.513 63.013 64.013 -3.4965 0 0 0 0.21486 1 12568 12568 5.7604 0 1 7784 4850 4821 4825 8036 8036 -0.0748421347581143 DSHPASPY 8 Unmodified _DSHPASPY_ 0 0 0 nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3 nc|ENSG00000151136|A6QL63-2|ABTB3 nc|ENSG00000151136|A6QL63-2|ABTB3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2174377441406 2 437.1905 872.366446 NaN NaN NaN NaN NaN NaN NaN 81.255 1 77.567 77.067 78.067 -3.6879 0 0 0 0.21486 1 15483 15483 12.532 3.1841 1 7785 4850 4821 4825 8037 8037 -0.0748421347581143 DSHTDLPPP 9 Unmodified _DSHTDLPPP_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2672119140625 2 489.729989 977.445425 0.11232 5.5008E-05 2.1754 0.0010654 2.2877 0.0011204 489.7308757450597 47.5 0.56195 44.558 44.41 44.972 -2.9421 21 15 2 0 0 0 0.54076 1 8731 8731 26.884 16.81 1 743310 7786 2423 4822 4826 8038 8038 -0.04419986241521201 DSIGYTMHSSY 11 Unmodified _DSIGYTMHSSY_ 0 0 0 REV__nc|ENSG00000132376|Q9BT40-2|INPP5K REV__nc|ENSG00000132376|Q9BT40-2|INPP5K MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.763671875 2 630.763703 1259.51285 NaN NaN NaN NaN NaN NaN NaN 91.623 1 91.623 91.123 92.123 0 0 0 0 0.22501 1 17910 17910 12.241 3.4953 1 + 7787 16111 4823 4827 8039 8039 -0.10652324092870913 DSKDEALAL 9 Unmodified _DSKDEALAL_ 0 0 0 REV__ENST00000489956.1_1_1:49226876-49242395:-|nuORF REV__ENST00000489956.1_1_1:49226876-49242395:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24090576171875 2 481.245472 960.476391 -0.0028081 -1.3514E-06 -1.6913 -0.00081393 -1.6941 -0.00081528 481.2443735995941 78.763 0.56695 74.958 74.769 75.336 -3.8048 19 15 2 0 0 0 0.45972 1 14931 14931 8.1555 1.8504 1 564760 + 7788 17489 4824 4828 8040 8040 -0.0054283292729451205 DSKEDGRKF 9 Unmodified _DSKEDGRKF_ 0 0 0 SAFB2|p.G824Afs*8|2|0.21|ENSG00000130254|chr19:5590332-5590332|C/-|frameshift_variant;SAFB2|p.P839Lfs*16|1|0.2|ENSG00000130254|chr19:5590287-5590287|G/-|frameshift_variant;SAFB2|p.L837Cfs*18|1|0.18|ENSG00000130254|chr19:5590295-5590295|C/-|frameshift_variant;ENSG00000130254|ENST00000252542|SAFB2;SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant;SAFB|p.D823Tfs*19|1|0.2|ENSG00000160633|chr19:5667361-5667361|G/-|frameshift_variant;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB SAFB2|p.G824Afs*8|2|0.21|ENSG00000130254|chr19:5590332-5590332|C/-|frameshift_variant;SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2655029296875 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 46.418 1 43.577 43.077 44.077 -2.8409 0 0 0 0.19162 1 8762 8762 4.7159 2.0847 1 7789 3595;5258 4825 4829 8041 8041 -0.017052234301445424 DSKFDIRRSNR 11 Unmodified _DSKFDIRRSNR_ 0 0 0 ENSG00000116273|ENST00000377648|PHF13 ENSG00000116273|ENST00000377648|PHF13 ENSG00000116273|ENST00000377648|PHF13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2461853027344 3 465.248013 1392.72221 NaN NaN NaN NaN NaN NaN NaN 157.12 1 151.84 151.34 152.34 -5.2854 0 0 0 0.22632 1 30488 30488 0.026206 0 1 7790 2922 4826 4830 8042 8042 0.04155679975269777 DSKFKYAA 8 Unmodified _DSKFKYAA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.240234375 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 42.146 1 39.427 38.927 39.927 -2.7191 0 0 0 0.18898 1 7877 7877 28.487 5.3384 1 + 7791 16525 4827 4831 8043 8043 -0.0016619051091311121 DSLDRFSWRRS 11 Unmodified _DSLDRFSWRRS_ 0 0 0 ENST00000451604.6_1_12:24102573-24102612:-|nuORF ENST00000451604.6_1_12:24102573-24102612:-|nuORF ENST00000451604.6_1_12:24102573-24102612:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 475.7811279296875 3 475.572496 1423.69566 0.29693 0.00014121 -1.1512 -0.00054747 -0.85425 -0.00040626 475.5719933082483 36.092 0.56129 33.816 33.595 34.157 -2.2766 39 15 3 0 0 0 0.88957 1 6382 6382 3.0723 3.0723 1 2149300 7792 9978 4828 4832 8044 8044 0.0007599108391787013 DSLDRFSWRRS 11 Unmodified _DSLDRFSWRRS_ 0 0 0 ENST00000451604.6_1_12:24102573-24102612:-|nuORF ENST00000451604.6_1_12:24102573-24102612:-|nuORF ENST00000451604.6_1_12:24102573-24102612:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 475.572496 1423.69566 -0.11917 -5.6672E-05 -0.8058 -0.00038322 -0.92497 -0.00043989 475.5721629108031 33.725 0.46474 33.725 33.474 33.938 0 -0.071662 6.0101E-05 NaN 3.0723 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2349500 7793 9978 4828 4832 0.0007599108391787013 DSLDRFSWRRS 11 Unmodified _DSLDRFSWRRS_ 0 0 0 ENST00000451604.6_1_12:24102573-24102612:-|nuORF ENST00000451604.6_1_12:24102573-24102612:-|nuORF ENST00000451604.6_1_12:24102573-24102612:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 475.572496 1423.69566 -0.44659 -0.00021239 -0.40707 -0.00019359 -0.85366 -0.00040598 475.57229162685223 36.239 0.56756 33.845 33.557 34.124 -2.3938 0.047856 0.00062898 NaN 3.0723 42 15 4 NaN NaN NaN NaN 0 NaN NaN 0 2566500 7794 9978 4828 4832 0.0007599108391787013 DSLDRFSWRRS 11 Unmodified _DSLDRFSWRRS_ 0 0 0 ENST00000451604.6_1_12:24102573-24102612:-|nuORF ENST00000451604.6_1_12:24102573-24102612:-|nuORF ENST00000451604.6_1_12:24102573-24102612:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 475.572496 1423.69566 0.097454 4.6347E-05 -1.0003 -0.00047571 -0.90284 -0.00042937 475.57203618190084 36.106 0.62807 33.802 33.555 34.183 -2.3044 0.005054 -0.00021739 NaN 3.0723 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2572200 7795 9978 4828 4832 0.0007599108391787013 DSLKLKSYL 9 Unmodified _DSLKLKSYL_ 0 0 0 tr|U7SMN1|U7SMN1_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01756PE=4SV=1 tr|U7SMN1|U7SMN1_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01756PE=4SV=1 tr|U7SMN1|U7SMN1_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01756PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.2094421386719 3 356.209613 1065.60701 NaN NaN NaN NaN NaN NaN NaN 46.283 1 43.417 42.917 43.917 -2.8666 0 0 0 0.19687 1 8421 8421 8.1555 7.7759 1 7796 26012 4829 4833 8045 8045 0.07683182791583931 DSLYWSVKP 9 Unmodified _DSLYWSVKP_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7810668945312 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 90.437 1 86.392 85.892 86.892 -4.0443 0 0 0 0.19512 1 17229 17229 4.7159 2.0847 1 7797 956 4830 4834 8046 8046 0.0013803672338781325 DSNIFREPFGK 11 Unmodified _DSNIFREPFGK_ 0 0 0 ENST00000389879.9_1_14:99947804-99959028:+|nuORF ENST00000389879.9_1_14:99947804-99959028:+|nuORF ENST00000389879.9_1_14:99947804-99959028:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22216796875 3 437.222693 1308.64625 NaN NaN NaN NaN NaN NaN NaN 22.536 1 20.747 20.247 21.247 -1.7886 0 0 0 0.21688 1 3583 3583 14.838 1.3192 1 7798 9358 4831 4835 8047 8047 0.004272830751233414 DSNLVTFAL 9 Unmodified _DSNLVTFAL_ 0 0 0 REV__tr|U7SV33|U7SV33_FUSNUGlutathionereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01112PE=4SV=1 REV__tr|U7SV33|U7SV33_FUSNUGlutathionereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01112PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2711181640625 2 490.258382 978.502212 0.13672 6.7029E-05 -0.053521 -2.6239E-05 0.083201 4.079E-05 490.2583853541985 129.27 0.55154 124.64 124.54 125.09 -4.6292 19 15 2 0 0 0 0.2213 1 25517 25517 7.4771 0 1 1136600 + 7799 25183 4832 4836 8048 8048 0.012100613150096251 DSNSHEDH 8 Unmodified _DSNSHEDH_ 0 0 0 REV__nc|ENSG00000102858|O60291-4|MGRN1 REV__nc|ENSG00000102858|O60291-4|MGRN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.185302734375 3 314.117894 939.331852 NaN NaN NaN NaN NaN NaN NaN 35.23 1 35.23 34.73 35.73 0 0 0 0 0.21486 1 6462 6462 0.45834 0 1 + 7800 23981 4833 4837 8049 8049 -0.14024081354568807 DSPLKQSV 8 Unmodified _DSPLKQSV_ 0 0 0 REV__ENST00000568808.5_1_15:55653104-55669251:-|nuORF REV__ENST00000568808.5_1_15:55653104-55669251:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2353210449219 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 74.108 1 70.514 70.014 71.014 -3.594 0 0 0 0.21486 1 14069 14069 8.5933 0 1 + 7801 23148 4834 4838 8050 8050 0.019015056264720442 DSPTEEDE 8 Unmodified _DSPTEEDE_ 0 0 0 REV__nc|ENSG00000171649|Q3SY52-2|ZIK1 REV__nc|ENSG00000171649|Q3SY52-2|ZIK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.1687927246094 2 461.169627 920.324701 NaN NaN NaN NaN NaN NaN NaN 4.9362 1 3.8962 3.3962 4.3962 -1.04 0 0 0 0.21486 1 182 182 0.79363 0 1 + 7802 18238 4835 4839 8051 8051 -0.13864858745660058 DSRKARGE 8 Unmodified _DSRKARGE_ 0 0 0 ENST00000598689.1_3_19:58095539-58095620:+|nuORF ENST00000598689.1_3_19:58095539-58095620:+|nuORF ENST00000598689.1_3_19:58095539-58095620:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2427062988281 2 459.741222 917.467892 -0.022191 -1.0202E-05 0.55997 0.00025744 0.53778 0.00024724 459.741429740106 84.22 2.3722 80.508 79.816 82.188 -3.7117 142 67 3 0 0 0 0.71876 1 16286 16286 11.64 0.52583 1 4900000 7803 11687 4836 4840 8052 8052 0.005856579467604206 DSRYENFI 8 Unmodified _DSRYENFI_ 0 0 0 ENSG00000139083|ENST00000396373|ETV6 ENSG00000139083|ENST00000396373|ETV6 ENSG00000139083|ENST00000396373|ETV6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2821655273438 2 522.243264 1042.47197 NaN NaN NaN NaN NaN NaN NaN 88.262 1 84.267 83.767 84.767 -3.9953 0 0 0 0.21171 1 16811 16811 15.847 1.9411 1 7804 4221 4837 4841 8053 8053 -0.04756297350195382 DSSDPGDG 8 Unmodified _DSSDPGDG_ 0 0 0 REV__ENSG00000025039|ENST00000369415|RRAGD REV__ENSG00000025039|ENST00000369415|RRAGD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21417236328125 2 375.132847 748.251142 NaN NaN NaN NaN NaN NaN NaN 7.4039 1 6.3891 5.8891 6.8891 -1.0148 0 0 0 0.2396 1 592 592 0.30703 0.30703 1 + 7805 13999 4838 4842 8054 8054 -0.133053623974547 DSSHHCVPG 9 Unmodified _DSSHHCVPG_ 0 0 0 ENST00000464251.5_1_X:148568821-148584844:-|nuORF ENST00000464251.5_1_X:148568821-148584844:-|nuORF ENST00000464251.5_1_X:148568821-148584844:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1694030761719 3 313.464348 937.371214 -0.70755 -0.00022179 -0.029033 -9.1009E-06 -0.73658 -0.00023089 313.4642983418455 43.074 0.83451 40.468 39.932 40.766 -2.606 38 23 2 0 0 0 0.8825 1 7729 7729 1.0715 0 1 2076300 7806 10108 4839 4843 8055 8055 -0.0999765260469303 DSSIDTHQY 9 Unmodified _DSSIDTHQY_ 0 0 0 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2836303710938 2 533.22781 1064.44107 NaN NaN NaN NaN NaN NaN NaN 34.315 1 31.998 31.498 32.498 -2.3175 0 0 0 0.21078 1 6297 6297 20.415 9.5906 1 7807 4534 4840 4844 8056 8056 -0.0885749545507224 DSSIDTHQY 9 Unmodified _DSSIDTHQY_ 0 0 0 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2767333984375 2 533.22781 1064.44107 NaN NaN NaN NaN NaN NaN NaN 34.38 1 32.062 31.562 32.562 -2.3175 0 0 0 0.034601 1 6310 6310 60.074 27.288 1 7808 4534 4840 4844 8057 8057 -0.0885749545507224 DSSIDTHQY 9 Unmodified _DSSIDTHQY_ 0 0 0 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2669677734375 2 533.22781 1064.44107 0.57346 0.00030579 -0.38676 -0.00020623 0.1867 9.9556E-05 533.2275111017269 34.406 0.48787 32.153 31.836 32.324 -2.2527 21 13 2 0 0 0 0.086396 1 6004 6004 60.074 30.992 1 779960 7809 4534 4840 4844 8058 8058 -0.0885749545507224 DSSIDTHQY 9 Unmodified _DSSIDTHQY_ 0 0 0 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 533.22781 1064.44107 0.41763 0.00022269 -0.51705 -0.00027571 -0.09942 -5.3014E-05 533.2275024625266 34.367 0.41797 32.151 31.951 32.369 -2.2158 -0.0010397 -9.4085E-05 NaN 60.074 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 509280 7810 4534 4840 4844 -0.0885749545507224 DSSSDSESESG 11 Unmodified _DSSSDSESESG_ 0 0 0 AP3B1|p.K923Nfs*4|5|0.24|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant;nc|ENSG00000132842|O00203-3|AP3B1;ENSG00000132842|ENST00000255194|AP3B1;AP3B1|p.E758Dfs*25|1|0.05|ENSG00000132842|chr5:78110330-78110331|-/GTTGTAATTGAAGGTAAATA|frameshift_variant AP3B1|p.K923Nfs*4|5|0.24|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant AP3B1|p.K923Nfs*4|5|0.24|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7817993164062 2 543.688912 1085.36327 NaN NaN NaN NaN NaN NaN NaN 127.26 1 122.47 121.97 122.97 -4.7958 0 0 0 0.22632 1 24429 24429 5.4027 2.3304 1 7811 175 4841 4845 8059 8059 -0.1759959790178982 DSSYPFANKES 11 Unmodified _DSSYPFANKES_ 0 0 0 nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ZMYM4|p.I347Sfs*51|1|0.15|ENSG00000146463|chr1:35370479-35370479|A/-|frameshift_variant;ZMYM4|p.Y806Ifs*12|1|0.16|ENSG00000146463|chr1:35389058-35389059|-/A|frameshift_variant;ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant nc|ENSG00000146463|Q5VZL5-2|ZMYM4 nc|ENSG00000146463|Q5VZL5-2|ZMYM4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.776123046875 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 136.71 1 131.88 131.38 132.38 -4.8307 0 0 0 0.1931 1 26329 26329 20.415 3.3016 1 7812 4657 4842 4846 8060 8060 -0.07632981703773112 DSTEERFY 8 Unmodified _DSTEERFY_ 0 0 0 ENSG00000151304|ENST00000339397|SRFBP1 ENSG00000151304|ENST00000339397|SRFBP1 ENSG00000151304|ENST00000339397|SRFBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7003173828125 2 523.724904 1045.43525 0.43113 0.00022579 -0.32594 -0.00017071 0.10519 5.5088E-05 523.724805506146 43.22 0.27791 43.22 43.155 43.433 0 10 7 2 0 0 0 0.81042 1 8108 8108 30.225 12.09 1 684620 7813 4858 4843 4847 8061 8061 -0.08564593966730172 DSTEQKVMK 9 Unmodified _DSTEQKVMK_ 0 0 0 REV__ENST00000498171.5_1_22:20077477-20097628:+|nuORF REV__ENST00000498171.5_1_22:20077477-20097628:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2633666992188 2 533.265881 1064.51721 NaN NaN NaN NaN NaN NaN NaN 38.212 1 35.77 35.27 36.27 -2.4419 0 0 0 0.13613 1 6793 6793 32.305 6.9062 1 + 7814 15914 4844 4848 8062 8062 -0.01246814879300473 DSTEQKVMK 9 Unmodified _DSTEQKVMK_ 0 0 0 REV__ENST00000498171.5_1_22:20077477-20097628:+|nuORF REV__ENST00000498171.5_1_22:20077477-20097628:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2647094726562 2 533.265881 1064.51721 NaN NaN NaN NaN NaN NaN NaN 38.21 1 35.805 35.305 36.305 -2.4049 0 0 0 0.13613 1 6789 6789 32.305 6.9062 1 + 7815 15914 4844 4848 8063 8063 -0.01246814879300473 DSTKDEIEE 9 Unmodified _DSTKDEIEE_ 0 0 0 REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1 REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.271728515625 2 533.232758 1064.45096 NaN NaN NaN NaN NaN NaN NaN 160.94 1 155.71 155.21 156.21 -5.2299 0 0 0 0.19665 1 31253 31253 0.12781 0 1 + 7816 24970 4845 4849 8064 8064 -0.07868352240370768 DSTYLHLL 8 Unmodified _DSTYLHLL_ 0 0 0 ENST00000369209.7_3_10:118434152-118434278:-|nuORF ENST00000369209.7_3_10:118434152-118434278:-|nuORF ENST00000369209.7_3_10:118434152-118434278:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2532958984375 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 144.97 1 140.3 139.8 140.8 -4.6694 0 0 0 0.21486 1 28724 28724 5.7604 0 1 7817 9112 4846 4850 8065 8065 0.00982078660570096 DSVSKKKK 8 Unmodified _DSVSKKKK_ 0 0 0 ENST00000493504.1_1_19:59093379-59093973:+|nuORF;AluSx4_dup10100|chr19:17815233-17815538:+|4.143453876782423|0.4987342787699046|3.05|481.0|14|3|sense;AluY_dup35561|chr6:33300685-33300983:+|1.1748435911146424|0.1243112229828391|3.24|479.0|4|1|sense;AluY_dup7324|chr1:206929266-206929570:+|9.241215358437865|0.0815861706738351|6.82|448.0|3|1|sense;AluSx3_dup29942|chr19:41728513-41728808:+|2.044018751923101|0.0786573993334847|4.7|480.0|9|3|sense;AluSx3_dup29941|chr19:41720501-41720799:-|1.5544935485926912|0.0583639242761596|4.74|481.0|2|1|sense;nc|ENSG00000170085|Q8NDZ2-2|SIMC1 ENST00000493504.1_1_19:59093379-59093973:+|nuORF ENST00000493504.1_1_19:59093379-59093973:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2304382324219 2 460.282192 918.549831 NaN NaN NaN NaN NaN NaN NaN 83.625 1 79.751 79.251 80.251 -3.8736 0 0 0 0.21486 1 15883 15883 2.5775 0.27475 1 7818 10547 4847 4851 8066 8066 0.08729760305857326 DSVSSWHL 8 Unmodified _DSVSSWHL_ 0 0 0 EPHB6|p.R284Qfs*41|1|0.43|ENSG00000106123|chr7:142864642-142864643|-/C|frameshift_variant;nc|ENSG00000106123|O15197-3|EPHB6;nc|ENSG00000106123|O15197|EPHB6;ENSG00000106123|ENST00000652003|EPHB6 EPHB6|p.R284Qfs*41|1|0.43|ENSG00000106123|chr7:142864642-142864643|-/C|frameshift_variant EPHB6|p.R284Qfs*41|1|0.43|ENSG00000106123|chr7:142864642-142864643|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2474670410156 2 465.719424 929.424296 -0.049706 -2.3149E-05 -0.22438 -0.0001045 -0.27409 -0.00012765 465.719362992755 52.631 0.45439 49.536 49.341 49.795 -3.0954 18 12 2 0 0 0 0.58903 1 9724 9724 38.151 2.107 1 966600 7819 2364 4848 4852 8067 8067 -0.0432395155037284 DSVSSWHL 8 Unmodified _DSVSSWHL_ 0 0 0 EPHB6|p.R284Qfs*41|1|0.43|ENSG00000106123|chr7:142864642-142864643|-/C|frameshift_variant;nc|ENSG00000106123|O15197-3|EPHB6;nc|ENSG00000106123|O15197|EPHB6;ENSG00000106123|ENST00000652003|EPHB6 EPHB6|p.R284Qfs*41|1|0.43|ENSG00000106123|chr7:142864642-142864643|-/C|frameshift_variant EPHB6|p.R284Qfs*41|1|0.43|ENSG00000106123|chr7:142864642-142864643|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.719424 929.424296 0.35069 0.00016332 0.075984 3.5387E-05 0.42668 0.00019871 465.7192878224798 49.589 0.41699 49.589 49.336 49.753 0 -0.0053368 0.00014858 NaN 38.151 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 709400 7820 2364 4848 4852 -0.0432395155037284 DSVVVHVY 8 Unmodified _DSVVVHVY_ 0 0 0 nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-2|USP19 nc|ENSG00000172046|O94966|USP19 nc|ENSG00000172046|O94966|USP19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2430114746094 2 459.239993 916.465432 0.68719 0.00031558 -0.43664 -0.00020052 0.25055 0.00011506 459.2397036858662 79.348 1.2561 79.348 78.819 80.075 0 102 35 4 0 0 0 0.015984 2 15431 15431;15473 136.08 91.674 1 37337000 7821 12463 4849 4853 8068;8069 8068 0.0038580948910293955 DSVVVHVY 8 Unmodified _DSVVVHVY_ 0 0 0 nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-2|USP19 nc|ENSG00000172046|O94966|USP19 nc|ENSG00000172046|O94966|USP19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23187255859375 2 459.239993 916.465432 -0.098529 -4.5248E-05 0.13762 6.3201E-05 0.039092 1.7953E-05 459.23995069506026 82.844 1.6124 79.237 78.185 79.797 -3.6079 116 45 5 0 0 0 0.046371 2 16175 16175;16224 119.03 74.621 1 52887000 7822 12463 4849 4853 8070;8071 8070 0.0038580948910293955 DSVVVHVY 8 Unmodified _DSVVVHVY_ 0 0 0 nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-2|USP19 nc|ENSG00000172046|O94966|USP19 nc|ENSG00000172046|O94966|USP19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2319641113281 2 459.239993 916.465432 0.057376 2.635E-05 0.18452 8.4739E-05 0.2419 0.00011109 459.24000394306927 83.155 1.3637 79.281 78.534 79.897 -3.8736 105 38 4 0 0 0 0.088049 2 15762 15737;15762 78.445 34.038 1 40936000 7823 12463 4849 4853 8072;8073 8073 0.0038580948910293955 DSVVVHVY 8 Unmodified _DSVVVHVY_ 0 0 0 nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-2|USP19 nc|ENSG00000172046|O94966|USP19 nc|ENSG00000172046|O94966|USP19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2430114746094 2 459.239993 916.465432 -0.10257 -4.7106E-05 0.16162 7.4221E-05 0.059043 2.7115E-05 459.2399116331518 83.001 1.7227 79.303 78.212 79.935 -3.6985 133 49 4 0 0 0 0.036776 5 15805 15805;15819;15853;15857;15906 112.56 68.151 1 48379000 7824 12463 4849 4853 8074;8075;8076;8077;8078 8074 0.0038580948910293955 DSYRKVYI 8 Unmodified _DSYRKVYI_ 0 0 0 ENST00000460800.5_1_12:69042504-69044290:+|nuORF ENST00000460800.5_1_12:69042504-69044290:+|nuORF ENST00000460800.5_1_12:69042504-69044290:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2689208984375 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 128.49 1 123.86 123.36 124.36 -4.6292 0 0 0 0.21486 1 25332 25332 5.2307 0.47466 1 7825 10058 4850 4854 8079 8079 0.025174564432290936 DTAAFTFPS 9 Unmodified _DTAAFTFPS_ 0 0 0 REV__ENSG00000110719|ENST00000265686|TCIRG1 REV__ENSG00000110719|ENST00000265686|TCIRG1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72198486328125 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 23.1 1 21.546 21.046 22.046 -1.5532 0 0 0 0.22962 1 3973 3973 14.838 1.3304 1 + 7826 15214 4851 4855 8080 8080 -0.05078487127468634 DTAAFTFPS 9 Unmodified _DTAAFTFPS_ 0 0 0 REV__ENSG00000110719|ENST00000265686|TCIRG1 REV__ENSG00000110719|ENST00000265686|TCIRG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7221374511719 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 23.237 1 21.783 21.283 22.283 -1.4535 0 0 0 0.22962 1 3741 3741 14.838 1.3304 1 + 7827 15214 4851 4855 8081 8081 -0.05078487127468634 DTAAHLEY 8 Unmodified _DTAAHLEY_ 0 0 0 REV__ENSG00000159200|ENST00000313806|RCAN1 REV__ENSG00000159200|ENST00000313806|RCAN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23016357421875 2 460.211432 918.408311 NaN NaN NaN NaN NaN NaN NaN 31.126 1 31.126 30.626 31.626 0 0 0 0 0.19954 1 5612 5612 24.674 1.5255 1 + 7828 17362 4852 4856 8082 8082 -0.054156577872845446 DTAAHLEY 8 Unmodified _DTAAHLEY_ 0 0 0 REV__ENSG00000159200|ENST00000313806|RCAN1 REV__ENSG00000159200|ENST00000313806|RCAN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2424621582031 2 460.211432 918.408311 NaN NaN NaN NaN NaN NaN NaN 33.096 1 30.88 30.38 31.38 -2.2158 0 0 0 0.21486 1 5755 5755 9.3474 1.4373 1 + 7829 17362 4852 4856 8083 8083 -0.054156577872845446 DTAAKFIGA 9 Unmodified _DTAAKFIGA_ 0 0 0 ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENSG00000135390|ENST00000394349|ATP5MC2;ENSG00000154518|ENST00000284727|ATP5MC3;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2 ENST00000497075.5_1_2:176043783-176046391:-|nuORF ENST00000497075.5_1_2:176043783-176046391:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 448.2531433105469 2 447.239993 892.465432 -0.090016 -4.0259E-05 0.17046 7.6235E-05 0.08044 3.5976E-05 447.2400320141016 60.619 0.66677 60.619 60.347 61.013 0 40 18 3 0 0 0 0.67531 1 11636 11636 7.9102 1.5561 1 4593100 7830 3923 4853 4857 8084 8084 0.01489809489100935 DTAAKFIGA 9 Unmodified _DTAAKFIGA_ 0 0 0 ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENSG00000135390|ENST00000394349|ATP5MC2;ENSG00000154518|ENST00000284727|ATP5MC3;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2 ENST00000497075.5_1_2:176043783-176046391:-|nuORF ENST00000497075.5_1_2:176043783-176046391:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 447.239993 892.465432 -0.062467 -2.7938E-05 -0.14178 -6.3408E-05 -0.20424 -9.1346E-05 447.2400274536029 63.508 0.65287 60.511 60.151 60.804 -2.9975 -0.034133 3.4328E-05 NaN 7.9102 48 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6527900 7831 3923 4853 4857 0.01489809489100935 DTAAKFIGA 9 Unmodified _DTAAKFIGA_ 0 0 0 ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENSG00000135390|ENST00000394349|ATP5MC2;ENSG00000154518|ENST00000284727|ATP5MC3;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2 ENST00000497075.5_1_2:176043783-176046391:-|nuORF ENST00000497075.5_1_2:176043783-176046391:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 447.239993 892.465432 0.13899 6.2161E-05 -0.29935 -0.00013388 -0.16036 -7.1721E-05 447.2399193260279 63.944 0.66087 60.528 60.219 60.879 -3.4158 -0.017128 -0.00010662 NaN 7.9102 49 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6201800 7832 3923 4853 4857 0.01489809489100935 DTAAKFIGA 9 Unmodified _DTAAKFIGA_ 0 0 0 ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENSG00000135390|ENST00000394349|ATP5MC2;ENSG00000154518|ENST00000284727|ATP5MC3;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2 ENST00000497075.5_1_2:176043783-176046391:-|nuORF ENST00000497075.5_1_2:176043783-176046391:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 447.239993 892.465432 0.17235 7.708E-05 -0.43579 -0.0001949 -0.26345 -0.00011782 447.23991397891484 63.779 0.72466 60.522 60.157 60.882 -3.2567 -0.022564 -0.00022866 NaN 7.9102 47 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5682500 7833 3923 4853 4857 0.01489809489100935 DTAATFNESHS 11 Unmodified _DTAATFNESHS_ 0 0 0 REV__nc|ENSG00000127863|Q9NS68-3|TNFRSF19 REV__nc|ENSG00000127863|Q9NS68-3|TNFRSF19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2672119140625 2 590.249274 1178.484 NaN NaN NaN NaN NaN NaN NaN 108.57 1 104.25 103.75 104.75 -4.32 0 0 0 0.22501 1 21395 21395 12.241 2.1667 1 + 7834 15899 4854 4858 8085 8085 -0.09810725397687747 DTAEDLRWEN 10 Unmodified _DTAEDLRWEN_ 0 0 0 REV__nc|ENSG00000150401|Q6PH85-2|DCUN1D2 REV__nc|ENSG00000150401|Q6PH85-2|DCUN1D2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 416.2643737792969 3 416.854558 1247.54184 -0.34882 -0.00014541 -0.79534 -0.00033154 -1.1442 -0.00047695 416.8541410985373 112.83 0.46805 108.37 108.07 108.54 -4.4539 15 12 2 0 0 0 0.91149 1 22186 22186 0.12286 0 1 1130500 + 7835 17030 4855 4859 8086 8086 -0.07202463472231102 DTAEDLRWEN 10 Unmodified _DTAEDLRWEN_ 0 0 0 REV__nc|ENSG00000150401|Q6PH85-2|DCUN1D2 REV__nc|ENSG00000150401|Q6PH85-2|DCUN1D2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 416.854558 1247.54184 0.23071 9.6174E-05 -1.3655 -0.00056922 -1.1348 -0.00047304 416.8538355855048 112.34 0.48672 108.06 107.91 108.39 -4.2725 -0.15477 -0.00029635 NaN 0.12286 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 807160 + 7836 17030 4855 4859 -0.07202463472231102 DTAHPELFL 9 Unmodified _DTAHPELFL_ 0 0 0 nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;BTN2A2|p.I493Sfs*20|1|0.29|ENSG00000124508|chr6:26392868-26392868|C/-|frameshift_variant;ENSG00000124508|ENST00000356709|BTN2A2;BTN2A2|p.P333T|1|0.31|ENSG00000124508|chr6:26392392-26392392|C/A|missense_variant nc|ENSG00000124508|Q8WVV5-5|BTN2A2 nc|ENSG00000124508|Q8WVV5-5|BTN2A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26904296875 2 521.763832 1041.51311 0.31251 0.00016306 0.14028 7.3195E-05 0.45279 0.00023625 521.7638318979916 109.17 0.55926 109.17 108.77 109.33 0 21 15 2 0 0 0 0.80521 1 21418 21418 10.824 8.7642 1 1544300 7837 346 4856 4860 8087 8087 -0.00598536310712916 DTAIRSGLE 9 Unmodified _DTAIRSGLE_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25177001953125 2 481.251089 960.487624 0.36212 0.00017427 -0.31154 -0.00014993 0.050575 2.4339E-05 481.25080571076177 30.179 0.34945 28.287 28.101 28.45 -1.8928 15 9 2 0 0 0 0.28819 1 5123 5123 32.305 3.2239 1 643740 7838 3195 4857 4861 8088 8088 0.005799891668630153 DTAISEEARQ 10 Unmodified _DTAISEEARQ_ 0 0 0 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 374.53125 3 373.847403 1118.52038 0.15222 5.6908E-05 -1.7704 -0.00066186 -1.6182 -0.00060495 373.8468201694467 62.87 0.74273 59.454 59.051 59.794 -3.4158 47 20 3 0 0 0 0.76269 1 11725 11725 1.7423 0.089654 1 3130700 7839 4407 4858 4862 8089 8089 -0.03413848500963468 DTAISEEARQ 10 Unmodified _DTAISEEARQ_ 0 0 0 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 373.847403 1118.52038 -0.16877 -6.3093E-05 -1.1636 -0.00043503 -1.3324 -0.00049812 373.84712725762694 62.388 1.1783 59.426 59.009 60.188 -2.9614 -0.014076 0.0003592 NaN 1.7423 55 33 3 NaN NaN NaN NaN 0 NaN NaN 0 3824900 7840 4407 4858 4862 -0.03413848500963468 DTAKDAVIS 9 Unmodified _DTAKDAVIS_ 0 0 0 nc|ENSG00000138942|Q96GF1-2|RNF185;ENSG00000138942|ENST00000326132|RNF185 nc|ENSG00000138942|Q96GF1-2|RNF185 nc|ENSG00000138942|Q96GF1-2|RNF185 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.239501953125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 75.563 1 71.84 71.34 72.34 -3.7227 0 0 0 0.22962 1 14294 14294 14.838 0.93222 1 7841 4218 4859 4863 8090 8090 0.0033318441828669165 DTAKKHGY 8 Unmodified _DTAKKHGY_ 0 0 0 ENSG00000106034|ENST00000310396|CPED1 ENSG00000106034|ENST00000310396|CPED1 ENSG00000106034|ENST00000310396|CPED1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23529052734375 2 460.235242 918.45593 -0.05854 -2.6942E-05 0.36277 0.00016696 0.30423 0.00014002 460.2353307348203 46.31 0.48504 43.445 43.172 43.657 -2.8653 29 13 3 0 0 0 8448 1 8449 8449 6.1918 3.5488 1 1695800 7842 2361 4860 4864 8091 8091 -0.006559587964261482 DTANYFSI 8 Unmodified _DTANYFSI_ 0 0 0 REV__ENST00000508906.6_3_6:26376811-26377501:+|nuORF REV__ENST00000508906.6_3_6:26376811-26377501:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2491760253906 2 465.713808 929.413062 0.11627 5.4147E-05 -0.29536 -0.00013755 -0.17909 -8.3404E-05 465.7134811850218 114.51 1.0266 109.95 109.45 110.48 -4.555 42 28 2 0 0 0 0.98792 1 21978 21978 2.3027 0 1 1017000 + 7843 15263 4861 4865 8092 8092 -0.054467736445189985 DTAPKQVAS 9 Unmodified _DTAPKQVAS_ 0 0 0 REV__ENST00000463189.1_1_2:74710589-74717392:+|nuORF REV__ENST00000463189.1_1_2:74710589-74717392:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22332763671875 2 458.740357 915.46616 0.23731 0.00010887 0.069855 3.2045E-05 0.30717 0.00014091 458.7404488239334 21.005 0.52349 21.005 20.742 21.265 0 20 14 2 0 0 0 0.77734 1 3494 3494 5.7319 0 1 328630 + 7844 21917 4862 4866 8093 8093 0.005046041381433497 DTAPKQVAS 9 Unmodified _DTAPKQVAS_ 0 0 0 REV__ENST00000463189.1_1_2:74710589-74717392:+|nuORF REV__ENST00000463189.1_1_2:74710589-74717392:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.740357 915.46616 0.56073 0.00025723 0.9318 0.00042746 1.4925 0.00068469 458.74045251807223 22.515 0.27177 21.041 20.905 21.177 -1.4742 0.018206 0.00031779 NaN 5.7319 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 249660 + 7845 21917 4862 4866 0.005046041381433497 DTARGTWI 8 Unmodified _DTARGTWI_ 0 0 0 REV__ENSG00000040608|ENST00000043402|RTN4R REV__ENSG00000040608|ENST00000043402|RTN4R MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2355041503906 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 54.723 1 51.586 51.086 52.086 -3.1377 0 0 0 0.19954 1 10136 10136 24.674 5.2349 1 + 7846 14048 4863 4867 8094 8094 -0.006559587964147795 DTASQGIVKY 10 Unmodified _DTASQGIVKY_ 0 0 0 REV__INTS7|p.R480Q|1|0.32|ENSG00000143493|chr1:211978303-211978303|C/T|missense_variant REV__INTS7|p.R480Q|1|0.32|ENSG00000143493|chr1:211978303-211978303|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27978515625 2 541.279846 1080.54514 -0.14728 -7.9718E-05 0.17418 9.4282E-05 0.026906 1.4564E-05 541.2799241179563 24.682 0.65038 22.828 22.606 23.256 -1.8534 35 18 2 0 0 0 0.68961 1 4104 4104 12.241 0.74595 1 5480900 + 7847 23666 4864 4868 8095 8095 0.008088313724556428 DTATFGCHETY 11 Unmodified _DTATFGCHETY_ 0 0 0 CON__P17690 CON__P17690 CON__P17690 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.763671875 2 622.748053 1243.48155 NaN NaN NaN NaN NaN NaN NaN 104.09 1 100.04 99.538 100.54 -4.0543 0 0 0 0.2196 1 20017 20017 1.2503 0.59225 1 + 7848 666 4865 4869 8096 8096 -0.13044897126951582 DTAVLAHET 9 Unmodified _DTAVLAHET_ 0 0 0 R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant;nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L;R3HCC1L|p.L487Wfs*8|1|0.1|ENSG00000166024|chr10:98209569-98209569|T/-|frameshift_variant R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant R3HCC1L|p.E618Rfs*66|1|0.43|ENSG00000166024|chr10:98231535-98231535|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73052978515625 2 478.737814 955.461075 0.0030207 1.4461E-06 -0.64509 -0.00030883 -0.64207 -0.00030738 478.7374090536517 47.72 1.2903 44.778 44.134 45.425 -2.9421 58 36 2 0 0 0 0.39168 1 8768 8768 2.6312 2.3658 1 1317200 7849 5683 4866 4870 8097 8097 -0.018436997244748454 DTCCSFHH 8 Unmodified _DTCCSFHH_ 0 0 0 REV__ENST00000589272.5_2_19:12945935-12946079:-|nuORF REV__ENST00000589272.5_2_19:12945935-12946079:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1817626953125 3 317.11455 948.321821 NaN NaN NaN NaN NaN NaN NaN 33.121 1 30.975 30.475 31.475 -2.1468 0 0 0 0.21486 1 5768 5768 1.6526 0 1 + 7850 23311 4867 4871 8098 8098 -0.1544068388515143 DTCCSFHH 8 Unmodified _DTCCSFHH_ 0 0 0 REV__ENST00000589272.5_2_19:12945935-12946079:-|nuORF REV__ENST00000589272.5_2_19:12945935-12946079:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1548767089844 3 317.11455 948.321821 NaN NaN NaN NaN NaN NaN NaN 33.164 1 31.017 30.517 31.517 -2.1468 0 0 0 0.21486 1 5777 5777 1.6526 0 1 + 7851 23311 4867 4871 8099 8099 -0.1544068388515143 DTCFVEHNWFH 11 Unmodified _DTCFVEHNWFH_ 0 0 0 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7374267578125 3 478.868033 1433.58227 NaN NaN NaN NaN NaN NaN NaN 16.894 1 15.678 15.178 16.178 -1.2159 0 0 0 0.23698 1 2682 2682 1.3296 0.55311 1 7852 4191 4868 4872 8100 8100 -0.11717820353464958 DTCFVEHNWFH 11 Unmodified _DTCFVEHNWFH_ 0 0 0 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72076416015625 3 478.868033 1433.58227 NaN NaN NaN NaN NaN NaN NaN 20.049 1 18.652 18.152 19.152 -1.3966 0 0 0 0.23698 1 3333 3333 1.3296 0 1 7853 4191 4868 4872 8101 8101 -0.11717820353464958 DTCSIMFL 8 Unmodified _DTCSIMFL_ 0 0 0 REV__ENSG00000197938|ENST00000355273|OR5H2 REV__ENSG00000197938|ENST00000355273|OR5H2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2541198730469 2 465.208989 928.403426 NaN NaN NaN NaN NaN NaN NaN 96.615 1 92.38 91.88 92.88 -4.2348 0 0 0 0.20568 1 18448 18448 20.871 0 1 + 7854 19374 4869 4873 8102 8102 -0.06364001245901818 DTDEDTAVNN 10 Unmodified _DTDEDTAVNN_ 0 0 0 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant;F5|p.G1754Efs*13|1|0.41|ENSG00000198734|chr1:169529768-169529768|T/-|frameshift_variant;ENSG00000198734|ENST00000367797|F5 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7896728515625 2 547.21764 1092.42073 0.33141 0.00018135 1.2106 0.00066246 1.542 0.00084381 547.2182799954707 36.829 0.8488 34.491 34.132 34.981 -2.3375 42 23 3 0 0 0 0.90091 1 6596 6596 1.3295 0 1 771770 7855 7482 4870 4874 8103 8103 -0.1217871090555036 DTDETFTK 8 Unmodified _DTDETFTK_ 0 0 0 ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7251281738281 2 478.714005 955.413456 NaN NaN NaN NaN NaN NaN NaN 86.48 1 86.48 85.98 86.98 0 0 0 0 0.2074 1 16879 16879 19.439 4.6007 1 7856 7671 4871 4875 8104 8104 -0.06603398715310504 DTDGKCLEY 9 Unmodified _DTDGKCLEY_ 0 0 0 ENST00000498524.5_1_3:15727727-15838055:-|nuORF;nc|ENSG00000206560|O15084-2|ANKRD28;nc|ENSG00000206560|O15084|ANKRD28;ENSG00000206560|ENST00000683139|ANKRD28;nc|ENSG00000206560|O15084-1|ANKRD28 ENST00000498524.5_1_3:15727727-15838055:-|nuORF ENST00000498524.5_1_3:15727727-15838055:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2767333984375 2 522.221139 1042.42773 NaN NaN NaN NaN NaN NaN NaN 52.891 1 50.007 49.507 50.507 -2.8837 0 0 0 0.022384 1 10070 10070 66.457 11.683 1 7857 7673 4872 4876 8105 8105 -0.09179069558695119 DTDGKCLEY 9 Unmodified _DTDGKCLEY_ 0 0 0 ENST00000498524.5_1_3:15727727-15838055:-|nuORF;nc|ENSG00000206560|O15084-2|ANKRD28;nc|ENSG00000206560|O15084|ANKRD28;ENSG00000206560|ENST00000683139|ANKRD28;nc|ENSG00000206560|O15084-1|ANKRD28 ENST00000498524.5_1_3:15727727-15838055:-|nuORF ENST00000498524.5_1_3:15727727-15838055:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2763671875 2 522.221139 1042.42773 NaN NaN NaN NaN NaN NaN NaN 53.215 1 50.128 49.628 50.628 -3.0876 0 0 0 0.19343 1 9794 9794 20.12 13.728 1 7858 7673 4872 4876 8106 8106 -0.09179069558695119 DTDISLIRY 9 Unmodified _DTDISLIRY_ 0 0 0 ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7884521484375 2 548.287671 1094.56079 0.32341 0.00017732 -0.061289 -3.3604E-05 0.26212 0.00014372 548.287570641484 122.11 0.92235 122.11 121.68 122.61 0 60 26 3 0 0 0 2.8988000000000002E-24 1 24062 24062 191.38 116.45 1 16124000 7859 2040 4873 4877 8107 8107 0.017291178894765835 DTDISLIRY 9 Unmodified _DTDISLIRY_ 0 0 0 ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7901000976562 2 548.287671 1094.56079 0.28354 0.00015546 -0.09154 -5.019E-05 0.192 0.00010527 548.287557973496 126.64 0.95232 122.02 121.48 122.43 -4.6172 84 26 4 0 0 0 1.3762E-17 1 24992 24992 185.05 92.559 1 33703000 7860 2040 4873 4877 8108 8108 0.017291178894765835 DTDISLIRY 9 Unmodified _DTDISLIRY_ 0 0 0 ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7788696289062 2 548.287671 1094.56079 0.26671 0.00014623 -0.096223 -5.2758E-05 0.17048 9.3474E-05 548.2875423925536 126.87 0.85223 122.08 121.63 122.49 -4.7958 74 23 4 0 0 0 1.0398E-44 1 24341 24341 215.27 130 1 33765000 7861 2040 4873 4877 8109 8109 0.017291178894765835 DTDISLIRY 9 Unmodified _DTDISLIRY_ 0 0 0 ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7908325195312 2 548.287671 1094.56079 0.25164 0.00013797 -0.01543 -8.46E-06 0.23621 0.00012951 548.2875900265856 126.81 0.88879 122.11 121.64 122.53 -4.6998 74 24 4 0 0 0 1.3762E-17 1 24415 24415 185.05 92.559 1 27887000 7862 2040 4873 4877 8110 8110 0.017291178894765835 DTDKVETF 8 Unmodified _DTDKVETF_ 0 0 0 GH1|p.M196T|1|0.23|ENSG00000259384|chr17:63917376-63917376|A/G|missense_variant GH1|p.M196T|1|0.23|ENSG00000259384|chr17:63917376-63917376|A/G|missense_variant GH1|p.M196T|1|0.23|ENSG00000259384|chr17:63917376-63917376|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7282409667969 2 477.724372 953.434192 -0.0015533 -7.4203E-07 0.30793 0.0001471 0.30637 0.00014636 477.72420415322466 65.832 0.64227 62.785 62.478 63.121 -3.047 38 18 3 0 0 0 0.52597 1 12738 12738 26.884 5.137 1 2863900 7863 11848 4874 4878 8111 8111 -0.04438808335646627 DTDKVETF 8 Unmodified _DTDKVETF_ 0 0 0 GH1|p.M196T|1|0.23|ENSG00000259384|chr17:63917376-63917376|A/G|missense_variant GH1|p.M196T|1|0.23|ENSG00000259384|chr17:63917376-63917376|A/G|missense_variant GH1|p.M196T|1|0.23|ENSG00000259384|chr17:63917376-63917376|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.724372 953.434192 -0.406 -0.00019396 0.99873 0.00047712 0.59273 0.00028316 477.724499587266 62.654 0.34856 62.654 62.381 62.73 0 -0.12792 0.00078742 NaN 26.884 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1101900 7864 11848 4874 4878 -0.04438808335646627 DTDKVETF 8 Unmodified _DTDKVETF_ 0 0 0 GH1|p.M196T|1|0.23|ENSG00000259384|chr17:63917376-63917376|A/G|missense_variant GH1|p.M196T|1|0.23|ENSG00000259384|chr17:63917376-63917376|A/G|missense_variant GH1|p.M196T|1|0.23|ENSG00000259384|chr17:63917376-63917376|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.724372 953.434192 0.24783 0.00011839 -0.50688 -0.00024215 -0.25905 -0.00012376 477.72379615749725 66.402 0.55531 62.906 62.558 63.114 -3.4965 0.12414 -0.00065112 NaN 26.884 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 940790 7865 11848 4874 4878 -0.04438808335646627 DTDMPKRY 8 Unmodified _DTDMPKRY_ 0 0 0 REV__ENSG00000154764|ENST00000285018|WNT7A REV__ENSG00000154764|ENST00000285018|WNT7A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 513.738037109375 2 513.239667 1024.46478 -0.089318 -4.5841E-05 1.228 0.00063026 1.1387 0.00058442 513.2404455369025 61.912 1.1602 58.95 58.58 59.741 -2.9614 49 32 2 0 0 0 0.69887 1 11889 11889 14.582 1.0738 1 1426400 + 7866 17195 4875 4879 8112 8112 -0.04647353222264883 DTDMPKRY 8 Unmodified _DTDMPKRY_ 0 0 0 REV__ENSG00000154764|ENST00000285018|WNT7A REV__ENSG00000154764|ENST00000285018|WNT7A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 513.239667 1024.46478 -0.09837 -5.0487E-05 1.3571 0.00069653 1.2588 0.00064605 513.2404744927159 59.04 1.2401 59.04 58.477 59.717 0 0.085063 -2.601E-05 NaN 14.582 47 34 2 NaN NaN NaN NaN 0 NaN NaN 0 1363100 + 7867 17195 4875 4879 -0.04647353222264883 DTDMPKRY 8 Unmodified _DTDMPKRY_ 0 0 0 REV__ENSG00000154764|ENST00000285018|WNT7A REV__ENSG00000154764|ENST00000285018|WNT7A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 513.239667 1024.46478 -0.089318 -4.5841E-05 1.228 0.00063026 1.1387 0.00058442 513.2404455369025 61.912 1.1602 58.95 58.58 59.741 -2.9614 -0.0043077 -0.00015855 NaN 14.582 49 32 2 NaN NaN NaN NaN 0 NaN NaN 0 1426400 + 7868 17195 4875 4879 -0.04647353222264883 DTDMPKRY 8 Unmodified _DTDMPKRY_ 0 0 0 REV__ENSG00000154764|ENST00000285018|WNT7A REV__ENSG00000154764|ENST00000285018|WNT7A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 513.239667 1024.46478 -0.37005 -0.00018992 1.7996 0.00092362 1.4295 0.00073369 513.2407218859202 62.367 1.3679 58.997 58.253 59.621 -3.3694 0.042361 0.00042816 NaN 14.582 54 38 2 NaN NaN NaN NaN 0 NaN NaN 0 1217200 + 7869 17195 4875 4879 -0.04647353222264883 DTDMPKRY 8 Unmodified _DTDMPKRY_ 0 0 0 REV__ENSG00000154764|ENST00000285018|WNT7A REV__ENSG00000154764|ENST00000285018|WNT7A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 513.239667 1024.46478 0.18612 9.5525E-05 1.2361 0.00063442 1.4222 0.00072994 513.240385750883 62.071 1.6235 58.832 58.137 59.761 -3.2395 -0.12312 -0.00015024 NaN 14.582 63 46 2 NaN NaN NaN NaN 0 NaN NaN 0 2041900 + 7870 17195 4875 4879 -0.04647353222264883 DTDPHVHH 8 Unmodified _DTDPHVHH_ 0 0 0 nc|ENSG00000267508|Q96NJ3-2|ZNF285;ENSG00000267508|ENST00000614994|ZNF285 nc|ENSG00000267508|Q96NJ3-2|ZNF285 nc|ENSG00000267508|Q96NJ3-2|ZNF285 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72161865234375 2 479.212298 956.410043 0.036009 1.7256E-05 -0.20687 -9.9135E-05 -0.17086 -8.1879E-05 479.2120049261349 39.042 0.94178 36.601 36.265 37.207 -2.4419 37 26 2 0 0 0 0.95284 1 6898 6898 14.582 5.2343 1 1584300 7871 7987 4876 4880 8113 8113 -0.06990603978670151 DTDQEEEE 8 Unmodified _DTDQEEEE_ 0 0 0 nc|ENSG00000160588|Q6UWV2-2|MPZL3;ENSG00000160588|ENST00000278949|MPZL3 nc|ENSG00000160588|Q6UWV2-2|MPZL3 nc|ENSG00000160588|Q6UWV2-2|MPZL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.9937744140625 3 332.12097 993.341079 NaN NaN NaN NaN NaN NaN NaN 47.464 1 44.522 44.022 45.022 -2.9421 0 0 0 0.21486 1 8656 8656 1.3295 0 1 7872 5256 4877 4881 8114 8114 -0.15585777579553906 DTDYRSMEY 9 Unmodified _DTDYRSMEY_ 0 0 0 ENSG00000004534|ENST00000266022|RBM6;RBM6|p.K834Nfs*27|4|0.24|ENSG00000004534|chr3:50062017-50062017|A/-|frameshift_variant;RBM6|p.K760Nfs*101|1|0.25|ENSG00000004534|chr3:50061143-50061143|A/-|frameshift_variant;nc|ENSG00000004534|P78332-3|RBM6 ENSG00000004534|ENST00000266022|RBM6 ENSG00000004534|ENST00000266022|RBM6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2534790039062 2 590.234778 1178.455 0.045332 2.6757E-05 0.068923 4.0681E-05 0.11425 6.7437E-05 590.2349293695868 59.247 0.71231 59.247 58.9 59.612 0 58 19 4 0 0 0 6.9608E-05 2 11336 11281;11336 128.93 75.1 1 14598000 7873 975 4878 4882 8115;8116 8116 -0.1270858601828877 DTDYRSMEY 9 Unmodified _DTDYRSMEY_ 0 0 0 ENSG00000004534|ENST00000266022|RBM6;RBM6|p.K834Nfs*27|4|0.24|ENSG00000004534|chr3:50062017-50062017|A/-|frameshift_variant;RBM6|p.K760Nfs*101|1|0.25|ENSG00000004534|chr3:50061143-50061143|A/-|frameshift_variant;nc|ENSG00000004534|P78332-3|RBM6 ENSG00000004534|ENST00000266022|RBM6 ENSG00000004534|ENST00000266022|RBM6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2682495117188 2 590.234778 1178.455 0.53549 0.00031606 -0.47989 -0.00028325 0.055597 3.2815E-05 590.2345635376221 62.606 0.76891 59.644 59.252 60.021 -2.9614 68 21 4 0 0 0 3.4741E-07 2 12099 12099;12103 140.63 86.8 1 20516000 7874 975 4878 4882 8117;8118 8117 -0.1270858601828877 DTDYRSMEY 9 Unmodified _DTDYRSMEY_ 0 0 0 ENSG00000004534|ENST00000266022|RBM6;RBM6|p.K834Nfs*27|4|0.24|ENSG00000004534|chr3:50062017-50062017|A/-|frameshift_variant;RBM6|p.K760Nfs*101|1|0.25|ENSG00000004534|chr3:50061143-50061143|A/-|frameshift_variant;nc|ENSG00000004534|P78332-3|RBM6 ENSG00000004534|ENST00000266022|RBM6 ENSG00000004534|ENST00000266022|RBM6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2512817382812 2 590.234778 1178.455 0.24372 0.00014385 -0.1888 -0.00011144 0.054921 3.2417E-05 590.2347142166228 62.841 0.89917 59.584 59.156 60.055 -3.2567 69 25 4 0 0 0 6.9608E-05 3 11740 11729;11740;11834 128.93 72.769 1 16873000 7875 975 4878 4882 8119;8120;8121 8120 -0.1270858601828877 DTDYRSMEY 9 Unmodified _DTDYRSMEY_ 0 0 0 ENSG00000004534|ENST00000266022|RBM6;RBM6|p.K834Nfs*27|4|0.24|ENSG00000004534|chr3:50062017-50062017|A/-|frameshift_variant;RBM6|p.K760Nfs*101|1|0.25|ENSG00000004534|chr3:50061143-50061143|A/-|frameshift_variant;nc|ENSG00000004534|P78332-3|RBM6 ENSG00000004534|ENST00000266022|RBM6 ENSG00000004534|ENST00000266022|RBM6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 590.234778 1178.455 0.5682 0.00033537 -0.52959 -0.00031258 0.038605 2.2786E-05 590.2344950876071 63.012 0.77882 59.596 59.194 59.973 -3.4158 0.07801 -0.00030987 NaN 140.63 67 21 4 NaN NaN NaN NaN 0 NaN NaN 0 13852000 7876 975 4878 4882 -0.1270858601828877 DTDYTITK 8 Unmodified _DTDYTITK_ 0 0 0 tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7333679199219 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 90.809 1 87.032 86.532 87.532 -3.7779 0 0 0 0.22676 1 17379 17379 0.30703 0 1 7877 26403 4879 4883 8122 8122 -0.029665218186096354 DTEEPNQP 8 Unmodified _DTEEPNQP_ 0 0 0 REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2574768066406 2 465.195979 928.377405 0.41929 0.00019505 -0.57678 -0.00026831 -0.15749 -7.3263E-05 465.19573160671973 31.058 2.9468 28.942 26.718 29.664 -2.1167 112 83 2 0 0 0 0.56049 1 5171 5171 24.674 1.5255 1 910470 + 7878 14589 4880 4884 8123 8123 -0.08964855892179457 DTEFENFQKS 10 Unmodified _DTEFENFQKS_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2;N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant;N4BP2|p.S1460Ifs*17|1|0.33|ENSG00000078177|chr4:40126175-40126176|-/A|frameshift_variant nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7730712890625 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 126.87 1 122.17 121.67 122.67 -4.6998 0 0 0 2.8426 1 24407 24407 0.26539 0.058062 1 7879 1572 4881 4885 8124 8124 -0.07632981703773112 DTEFLYYD 8 Unmodified _DTEFLYYD_ 0 0 0 REV__nc|ENSG00000154864|Q9H5I5-4|PIEZO2 REV__nc|ENSG00000154864|Q9H5I5-4|PIEZO2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2694091796875 2 533.224205 1064.43386 NaN NaN NaN NaN NaN NaN NaN 58.658 1 58.658 58.158 59.158 0 0 0 0 0.23749 1 11229 11229 0.12286 0 1 + 7880 17201 4882 4886 8125 8125 -0.09578228055511318 DTEKVFQWFRI 11 Unmodified _DTEKVFQWFRI_ 0 0 0 REV__ENST00000466609.1_1_3:98378565-98379411:+|nuORF REV__ENST00000466609.1_1_3:98378565-98379411:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2650451660156 3 490.257626 1467.75105 NaN NaN NaN NaN NaN NaN NaN 134.8 1 134.8 134.3 135.3 0 0 0 0 0.22632 1 26690 26690 1.4551 0 1 + 7881 21971 4883 4887 8126 8126 0.035884045516922924 DTELKQVAY 9 Unmodified _DTELKQVAY_ 0 0 0 ENSG00000131236|ENST00000372805|CAP1;nc|ENSG00000131236|Q01518-2|CAP1;ENST00000461993.1_1_1:40535258-40537202:+|nuORF ENSG00000131236|ENST00000372805|CAP1 ENSG00000131236|ENST00000372805|CAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2758178710938 2 533.774396 1065.53424 -0.19848 -0.00010594 -0.23377 -0.00012478 -0.43224 -0.00023072 533.774163193982 62.455 0.5584 62.455 62.207 62.766 0 28 15 3 0 0 0 0.23744 1 12029 12029 43.858 21.122 1 3991900 7882 3664 4884 4888 8127 8127 0.004094289981367183 DTELKQVAY 9 Unmodified _DTELKQVAY_ 0 0 0 ENSG00000131236|ENST00000372805|CAP1;nc|ENSG00000131236|Q01518-2|CAP1;ENST00000461993.1_1_1:40535258-40537202:+|nuORF ENSG00000131236|ENST00000372805|CAP1 ENSG00000131236|ENST00000372805|CAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2743530273438 2 533.774396 1065.53424 0.089585 4.7818E-05 0.099016 5.2852E-05 0.1886 0.00010067 533.7744610014648 65.608 0.70293 62.561 62.173 62.876 -3.047 42 20 3 0 0 0 0.0088712 2 12684 12684;12733 106.94 57.386 1 4975800 7883 3664 4884 4888 8128;8129 8128 0.004094289981367183 DTELKQVAY 9 Unmodified _DTELKQVAY_ 0 0 0 ENSG00000131236|ENST00000372805|CAP1;nc|ENSG00000131236|Q01518-2|CAP1;ENST00000461993.1_1_1:40535258-40537202:+|nuORF ENSG00000131236|ENST00000372805|CAP1 ENSG00000131236|ENST00000372805|CAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2781982421875 2 533.774396 1065.53424 0.60552 0.00032321 -0.43818 -0.00023389 0.16733 8.9319E-05 533.7740807750258 66.023 0.59229 62.565 62.35 62.942 -3.4581 32 16 3 0 0 0 0.022938 1 12366 12366 89.401 54.999 1 3380300 7884 3664 4884 4888 8130 8130 0.004094289981367183 DTELKQVAY 9 Unmodified _DTELKQVAY_ 0 0 0 ENSG00000131236|ENST00000372805|CAP1;nc|ENSG00000131236|Q01518-2|CAP1;ENST00000461993.1_1_1:40535258-40537202:+|nuORF ENSG00000131236|ENST00000372805|CAP1 ENSG00000131236|ENST00000372805|CAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2700805664062 2 533.774396 1065.53424 0.36504 0.00019485 -0.15602 -8.3279E-05 0.20902 0.00011157 533.7743831810102 65.821 0.76385 62.538 62.13 62.894 -3.2832 41 21 3 0 0 0 0.031786 1 12389 12389 79.596 43.469 1 3354700 7885 3664 4884 4888 8131 8131 0.004094289981367183 DTELLGLSA 9 Unmodified _DTELLGLSA_ 0 0 0 nc|ENSG00000126012|P41229-4|KDM5C;KDM5C|p.L1399Wfs*5|2|0.16|ENSG00000126012|chrX:53193560-53193560|G/-|frameshift_variant;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D nc|ENSG00000126012|P41229-4|KDM5C nc|ENSG00000126012|P41229-4|KDM5C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24334716796875 2 459.742565 917.470577 0.22313 0.00010258 0.25714 0.00011822 0.48027 0.0002208 459.74260140519897 118.14 0.70762 118.14 117.76 118.47 0 32 19 2 0 0 0 0.045444 2 23286 23243;23286 36.81 5.0818 1 2005700 7886 3413 4885 4889 8132;8133 8133 0.008540685610455512 DTELLGLSA 9 Unmodified _DTELLGLSA_ 0 0 0 nc|ENSG00000126012|P41229-4|KDM5C;KDM5C|p.L1399Wfs*5|2|0.16|ENSG00000126012|chrX:53193560-53193560|G/-|frameshift_variant;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D nc|ENSG00000126012|P41229-4|KDM5C nc|ENSG00000126012|P41229-4|KDM5C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2340087890625 2 459.742565 917.470577 0.12095 5.5607E-05 0.53544 0.00024617 0.6564 0.00030177 459.7427337762283 122.51 0.73978 117.96 117.71 118.45 -4.5476 34 20 2 0 0 0 0.095246 1 24205 24205 14.987 3.2373 1 2193500 7887 3413 4885 4889 8134 8134 0.008540685610455512 DTELNQIK 8 Unmodified _DTELNQIK_ 0 0 0 ENSG00000151952|ENST00000422113|TMEM132D;TMEM132D|p.S1011Afs*35|1|0.47|ENSG00000151952|chr12:129074144-129074144|T/-|frameshift_variant;nc|ENSG00000151952|Q14C87-2|TMEM132D ENSG00000151952|ENST00000422113|TMEM132D ENSG00000151952|ENST00000422113|TMEM132D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24017333984375 2 480.753464 959.492375 -0.14524 -6.9823E-05 0.19949 9.5905E-05 0.054251 2.6081E-05 480.75356676950435 44.682 0.56671 41.935 41.533 42.1 -2.7475 22 15 2 0 0 0 0.69713 1 8039 8039 14.838 0 1 2373500 7888 4897 4886 4890 8135 8135 0.011008733096332435 DTENVPIM 8 Unmodified _DTENVPIM_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2308654785156 2 459.715493 917.416433 -0.13973 -6.4236E-05 -0.09012 -4.143E-05 -0.22985 -0.00010567 459.7155470989437 47.079 0.65505 44.238 43.94 44.595 -2.8409 24 18 2 0 0 0 0.5707 1 8874 8874 24.021 9.4389 1 1333200 7889 2571 4887 4891 8136 8136 -0.045578468621670254 DTENVPIM 8 Unmodified _DTENVPIM_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.715493 917.416433 -0.096402 -4.4318E-05 -0.12249 -5.6309E-05 -0.21889 -0.00010063 459.71552424343406 47.182 0.59059 44.232 43.912 44.502 -2.9499 -0.083316 -2.8865E-05 NaN 24.021 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1012600 7890 2571 4887 4891 -0.045578468621670254 DTENVPIMY 9 Unmodified _DTENVPIMY_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.262451171875 2 541.247157 1080.47976 NaN NaN NaN NaN NaN NaN NaN 65.294 1 62.247 61.747 62.747 -3.047 0 0 0 0.23508 1 12636 12636 8.5933 0.68312 1 7891 2571 4888 4892 8137 8137 -0.0572590614492583 DTENVPIMY 9 Unmodified _DTENVPIMY_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2615356445312 2 541.247157 1080.47976 NaN NaN NaN NaN NaN NaN NaN 65.638 1 62.179 61.679 62.679 -3.4581 0 0 0 0.23411 1 12286 12286 13.508 2.684 1 7892 2571 4888 4892 8138 8138 -0.0572590614492583 DTERAIFAF 9 Unmodified _DTERAIFAF_ 0 0 0 ENST00000312990.10_1_12:58142143-58142311:-|nuORF ENST00000312990.10_1_12:58142143-58142311:-|nuORF ENST00000312990.10_1_12:58142143-58142311:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0492248535156 3 357.181946 1068.52401 -0.47126 -0.00016832 -2.1143 -0.00075519 -2.5855 -0.00092351 357.1810208844888 34.806 0.3466 32.488 32.293 32.639 -2.3175 14 9 2 0 0 0 0.84582 1 6368 6368 12.241 3.4953 1 419330 7893 8662 4889 4893 8139 8139 -0.00751133936455517 DTERAIFAF 9 Unmodified _DTERAIFAF_ 0 0 0 ENST00000312990.10_1_12:58142143-58142311:-|nuORF ENST00000312990.10_1_12:58142143-58142311:-|nuORF ENST00000312990.10_1_12:58142143-58142311:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.1033935546875 3 357.181946 1068.52401 -0.33418 -0.00011936 -1.8779 -0.00067074 -2.212 -0.0007901 357.18131044551905 34.694 0.38792 32.418 32.203 32.591 -2.2766 14 10 2 0 0 0 0.84582 1 6063 6063 12.241 3.4953 1 261120 7894 8662 4889 4893 8140 8140 -0.00751133936455517 DTERAIFAF 9 Unmodified _DTERAIFAF_ 0 0 0 ENST00000312990.10_1_12:58142143-58142311:-|nuORF ENST00000312990.10_1_12:58142143-58142311:-|nuORF ENST00000312990.10_1_12:58142143-58142311:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 357.181946 1068.52401 -0.24856 -8.878E-05 -2.6713 -0.00095415 -2.9199 -0.0010429 357.180930590905 32.519 0.13823 32.519 32.433 32.571 0 0.044291 -0.0004132 NaN 12.241 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 278400 7895 8662 4889 4893 -0.00751133936455517 DTERKYHLRY 10 Unmodified _DTERKYHLRY_ 0 0 0 nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL;ENST00000503648.1_1_16:1451355-1464692:-|nuORF nc|ENSG00000059145|Q9H9P5-5|UNKL nc|ENSG00000059145|Q9H9P5-5|UNKL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 345.85797119140625 4 345.930926 1379.6946 -0.24052 -8.3204E-05 -0.094811 -3.2798E-05 -0.33533 -0.000116 345.9308545230578 32.553 0.38254 30.405 30.245 30.627 -2.1483 25 10 4 0 0 0 1.1036 1 5662 5662 19.362 18.664 1 1334300 7896 1297 4890 4894 8141 8141 0.019937767150395302 DTERKYHLRY 10 Unmodified _DTERKYHLRY_ 0 0 0 nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL;ENST00000503648.1_1_16:1451355-1464692:-|nuORF nc|ENSG00000059145|Q9H9P5-5|UNKL nc|ENSG00000059145|Q9H9P5-5|UNKL MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 345.930926 1379.6946 -0.30468 -0.0001054 -0.11385 -3.9383E-05 -0.41852 -0.00014478 346.18151737368953 30.28 0.4958 30.28 30.024 30.519 0 -0.13248 0.00027384 NaN 19.362 22 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1110900 7897 1297 4890 4894 0.019937767150395302 DTERKYHLRY 10 Unmodified _DTERKYHLRY_ 0 0 0 nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL;ENST00000503648.1_1_16:1451355-1464692:-|nuORF nc|ENSG00000059145|Q9H9P5-5|UNKL nc|ENSG00000059145|Q9H9P5-5|UNKL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 345.930926 1379.6946 -0.1618 -5.5971E-05 -0.3546 -0.00012267 -0.51639 -0.00017864 345.9307221669293 32.726 0.38652 30.495 30.294 30.68 -2.2305 0.082762 -5.9293E-05 NaN 19.362 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 973930 7898 1297 4890 4894 0.019937767150395302 DTERKYHLRY 10 Unmodified _DTERKYHLRY_ 0 0 0 nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL;ENST00000503648.1_1_16:1451355-1464692:-|nuORF nc|ENSG00000059145|Q9H9P5-5|UNKL nc|ENSG00000059145|Q9H9P5-5|UNKL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 345.930926 1379.6946 0.25932 8.9707E-05 -0.80282 -0.00027772 -0.54349 -0.00018801 345.930566955382 32.565 0.45958 30.469 30.147 30.607 -2.0959 0.057175 -0.00067951 NaN 19.362 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1151700 7899 1297 4890 4894 0.019937767150395302 DTERPQTL 8 Unmodified _DTERPQTL_ 0 0 0 nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179 nc|ENSG00000277399|Q6PRD1|GPR179 nc|ENSG00000277399|Q6PRD1|GPR179 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2455749511719 2 480.243264 958.471974 0.39008 0.00018733 -0.58877 -0.00028275 -0.19869 -9.542E-05 480.24297372992413 32.871 0.76215 30.655 30.282 31.044 -2.2158 53 21 3 0 0 0 0.69713 1 5668 5668 14.838 1.7958 1 8595300 7900 8036 4891 4895 8142 8142 -0.008922973501853448 DTETGKRKM 9 Unmodified _DTETGKRKM_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.285400390625 2 533.271498 1064.52844 NaN NaN NaN NaN NaN NaN NaN 38.455 1 36.05 35.55 36.55 -2.4049 0 0 0 0.22621 1 6843 6843 15.847 1.0089 1 7901 5723 4892 4896 8143 8143 -0.0012399278516568302 DTETWTQY 8 Unmodified _DTETWTQY_ 0 0 0 REV__ENST00000243253.7_1_3:127789169-127789619:+|nuORF REV__ENST00000243253.7_1_3:127789169-127789619:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2786865234375 2 522.219454 1042.42436 NaN NaN NaN NaN NaN NaN NaN 70.637 1 67.057 66.557 67.557 -3.5798 0 0 0 0.21486 1 13316 13316 5.7604 0 1 + 7902 20094 4893 4897 8144 8144 -0.0951599634104241 DTEVKWLA 8 Unmodified _DTEVKWLA_ 0 0 0 REV__nc|ENSG00000184571|Q7Z3Z3|PIWIL3 REV__nc|ENSG00000184571|Q7Z3Z3|PIWIL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25396728515625 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 28.174 1 26.418 25.918 26.918 -1.7552 0 0 0 0.20568 1 4746 4746 20.871 6.2895 1 + 7903 18905 4894 4898 8145 8145 0.009820786605587273 DTEVKWLA 8 Unmodified _DTEVKWLA_ 0 0 0 REV__nc|ENSG00000184571|Q7Z3Z3|PIWIL3 REV__nc|ENSG00000184571|Q7Z3Z3|PIWIL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2539367675781 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 28.381 1 26.385 25.885 26.885 -1.9962 0 0 0 0.20568 1 4787 4787 20.871 1.4322 1 + 7904 18905 4894 4898 8146 8146 0.009820786605587273 DTFDRLEQA 9 Unmodified _DTFDRLEQA_ 0 0 0 REV__DOCK8|p.G84R|1|0.07|ENSG00000107099|chr9:286554-286554|G/A|missense_variant REV__DOCK8|p.G84R|1|0.07|ENSG00000107099|chr9:286554-286554|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7694702148438 2 547.759278 1093.504 0.71713 0.00039281 -0.56241 -0.00030806 0.15472 8.4752E-05 547.7591206829496 21.792 0.1462 20.318 20.231 20.377 -1.4742 6 3 2 0 0 0 0.40602 1 3683 3683 25.399 3.8623 1 326900 + 7905 13740 4895 4899 8147 8147 -0.03900929667042874 DTFEVKKI 8 Unmodified _DTFEVKKI_ 0 0 0 REV__nc|ENSG00000164093|Q99697|PITX2 REV__nc|ENSG00000164093|Q99697|PITX2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25775146484375 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 32.978 1 30.832 30.332 31.332 -2.1468 0 0 0 0.21486 1 5740 5740 8.5933 0 1 + 7906 24135 4896 4900 8148 8148 0.04846938211710494 DTFFSKNH 8 Unmodified _DTFFSKNH_ 0 0 0 REV__ENSG00000111348|ENST00000228945|ARHGDIB REV__ENSG00000111348|ENST00000228945|ARHGDIB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.00531005859375 3 332.490891 994.450845 NaN NaN NaN NaN NaN NaN NaN 27.239 1 25.605 25.105 26.105 -1.6347 0 0 0 0.21486 1 4549 4549 3.9444 0 1 + 7907 15240 4897 4901 8149 8149 -0.04660262659035652 DTFGEDWQ 8 Unmodified _DTFGEDWQ_ 0 0 0 ENSG00000148082|ENST00000375835|SHC3;nc|ENSG00000148082|Q92529-2|SHC3 ENSG00000148082|ENST00000375835|SHC3 ENSG00000148082|ENST00000375835|SHC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.19622802734375 3 333.134773 996.38249 -0.54421 -0.00018129 -0.76483 -0.00025479 -1.309 -0.00043609 333.46860652624673 89.157 0.17384 89.157 88.999 89.173 0 6 4 2 0 0 0 1.0281 1 17392 17392 0.45834 0.45834 1 878530 7908 4726 4898 4902 8150 8150 -0.11584552029569295 DTFHFLREEKF 11 Unmodified _DTFHFLREEKF_ 0 0 0 ZNF222|p.F294Sfs*5|1|0.25|ENSG00000159885|chr19:44032553-44032553|T/-|frameshift_variant;ENSG00000178386|ENST00000434772|ZNF223;ENSG00000159885|ENST00000391960|ZNF222 ZNF222|p.F294Sfs*5|1|0.25|ENSG00000159885|chr19:44032553-44032553|T/-|frameshift_variant ZNF222|p.F294Sfs*5|1|0.25|ENSG00000159885|chr19:44032553-44032553|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26495361328125 3 490.245498 1467.71466 NaN NaN NaN NaN NaN NaN NaN 62.918 1 59.661 59.161 60.161 -3.2567 0 0 0 0.22632 1 11802 11802 5.4027 0 1 7909 5222 4899 4903 8151 8151 -0.00048472344997207983 DTFKAWGKE 9 Unmodified _DTFKAWGKE_ 0 0 0 REV__PPP6R2|p.P854Rfs*23|1|0.41|ENSG00000100239|chr22:50440981-50440981|C/-|frameshift_variant REV__PPP6R2|p.P854Rfs*23|1|0.41|ENSG00000100239|chr22:50440981-50440981|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2708129882812 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 135.18 1 130.54 130.04 131.04 -4.6399 0 0 0 0.18489 1 26663 26663 2.6312 0 1 + 7910 14679 4900 4904 8152 8152 -0.01303133936426093 DTFKDFMNN 9 Unmodified _DTFKDFMNN_ 0 0 0 tr|U7SS12|U7SS12_FUSNUDipeptidaseEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01503PE=3SV=1 tr|U7SS12|U7SS12_FUSNUDipeptidaseEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01503PE=3SV=1 tr|U7SS12|U7SS12_FUSNUDipeptidaseEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01503PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.511962890625 3 377.830696 1130.47026 -0.083831 -3.1674E-05 0.68187 0.00025763 0.59804 0.00022596 378.16566052587183 26.054 0.65191 26.054 25.774 26.426 0 62 18 5 0 0 0 0.60489 1 4614 4614 0.12781 0.098532 1 4499500 7911 26089 4901 4905 8153 8153 -0.0897567443043954 DTFSIRRFSKH 11 Unmodified _DTFSIRRFSKH_ 0 0 0 REV__RASGRP3|p.N237Ifs*5|1|0.36|ENSG00000152689|chr2:33524447-33524447|A/-|frameshift_variant REV__RASGRP3|p.N237Ifs*5|1|0.36|ENSG00000152689|chr2:33524447-33524447|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24859619140625 3 465.249354 1392.72623 NaN NaN NaN NaN NaN NaN NaN 103.7 1 99.478 98.978 99.978 -4.2183 0 0 0 0.22632 1 20388 20388 0.0059557 0 1 + 7912 17119 4902 4906 8154 8154 0.04557769468965489 DTFVMMHL 8 Unmodified _DTFVMMHL_ 0 0 0 REV__nc|ENSG00000173077|Q9P2X7|DELEC1 REV__nc|ENSG00000173077|Q9P2X7|DELEC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.0054931640625 3 331.822596 992.445959 0.68053 0.00022582 -0.3514 -0.0001166 0.32913 0.00010921 331.8224475533148 24.281 0.72943 22.728 22.425 23.155 -1.5532 52 20 4 0 0 0 1.0243 1 4167 4167 3.9444 2.1002 1 24539000 + 7913 24172 4903 4907 8155 8155 -0.05056606117659612 DTGALYLY 8 Unmodified _DTGALYLY_ 0 0 0 ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6 ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENST00000489684.2_1_3:49044864-49050780:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.228271484375 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 137.95 1 133.02 132.52 133.52 -4.9216 0 0 0 0.19298 1 26525 26525 2.643 0.90076 1 7914 6573 4904 4908 8156 8156 -0.02209299122102948 DTGASTVPPA 10 Unmodified _DTGASTVPPA_ 0 0 0 REV__ENST00000005259.8_2_7:107220481-107220637:+|nuORF REV__ENST00000005259.8_2_7:107220481-107220637:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2249450683594 2 458.224539 914.434526 -0.040083 -1.8367E-05 0.60919 0.00027915 0.56911 0.00026078 458.2248023389424 48.162 0.45258 45.22 44.972 45.425 -2.9421 17 12 2 0 0 0 0.59928 1 8812 8812 19.257 2.1441 1 713540 + 7915 19966 4905 4909 8157 8157 -0.026113886158100286 DTGFSCDGSAS 11 Unmodified _DTGFSCDGSAS_ 0 0 0 ENSG00000133243|ENST00000255608|BTBD2;nc|ENSG00000133243|Q9BX70-2|BTBD2;ENST00000589685.2_1_19:1986489-1990887:-|nuORF ENSG00000133243|ENST00000255608|BTBD2 ENSG00000133243|ENST00000255608|BTBD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6912841796875 2 523.690204 1045.36585 NaN NaN NaN NaN NaN NaN NaN 39.857 1 39.857 39.357 40.357 0 0 0 0 0.22632 1 7404 7404 0.172 0 1 7916 3792 4906 4910 8158 8158 -0.15501420977830094 DTGMVAHIN 9 Unmodified _DTGMVAHIN_ 0 0 0 CAPN11|p.G232Afs*56|2|0.18|ENSG00000137225|chr6:44173246-44173246|G/-|frameshift_variant;ENSG00000137225|ENST00000398776|CAPN11 CAPN11|p.G232Afs*56|2|0.18|ENSG00000137225|chr6:44173246-44173246|G/-|frameshift_variant CAPN11|p.G232Afs*56|2|0.18|ENSG00000137225|chr6:44173246-44173246|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7370300292969 2 479.226559 956.438566 -0.2716 -0.00013016 0.4313 0.00020669 0.15971 7.6536E-05 479.22672627184033 39.334 1.1903 36.785 36.157 37.348 -2.5491 77 33 3 0 0 0 0.5059 1 7408 7408 19.257 1.122 1 5183500 7917 383 4907 4911 8159 8159 -0.04139622393756781 DTGTSLLTGP 10 Unmodified _DTGTSLLTGP_ 0 0 0 ENSG00000256713|ENST00000312403|PGA5;ENSG00000229859|ENST00000325558|PGA3;ENSG00000229183|ENST00000378149|PGA4 ENSG00000256713|ENST00000312403|PGA5 ENSG00000256713|ENST00000312403|PGA5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24444580078125 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 25.064 1 23.416 22.916 23.916 -1.6482 0 0 0 0.21574 1 4387 4387 25.399 0 1 7918 7802 4908 4912 8160 8160 -0.005428329272831434 DTGTSLLTGP 10 Unmodified _DTGTSLLTGP_ 0 0 0 ENSG00000256713|ENST00000312403|PGA5;ENSG00000229859|ENST00000325558|PGA3;ENSG00000229183|ENST00000378149|PGA4 ENSG00000256713|ENST00000312403|PGA5 ENSG00000256713|ENST00000312403|PGA5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2542724609375 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 25.113 1 23.465 22.965 23.965 -1.6482 0 0 0 0.17827 1 4398 4398 32.305 0 1 7919 7802 4908 4912 8161 8161 -0.005428329272831434 DTGTSLLTGP 10 Unmodified _DTGTSLLTGP_ 0 0 0 ENSG00000256713|ENST00000312403|PGA5;ENSG00000229859|ENST00000325558|PGA3;ENSG00000229183|ENST00000378149|PGA4 ENSG00000256713|ENST00000312403|PGA5 ENSG00000256713|ENST00000312403|PGA5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2362060546875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 25.016 1 23.482 22.982 23.982 -1.5342 0 0 0 0.17827 1 4094 4094 32.305 0 1 7920 7802 4908 4912 8162 8162 -0.005428329272831434 DTGTSLLTGP 10 Unmodified _DTGTSLLTGP_ 0 0 0 ENSG00000256713|ENST00000312403|PGA5;ENSG00000229859|ENST00000325558|PGA3;ENSG00000229183|ENST00000378149|PGA4 ENSG00000256713|ENST00000312403|PGA5 ENSG00000256713|ENST00000312403|PGA5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2451171875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 25.154 1 23.62 23.12 24.12 -1.5342 0 0 0 0.22323 1 4122 4122 24.021 0 1 7921 7802 4908 4912 8163 8163 -0.005428329272831434 DTGTSLLTGP 10 Unmodified _DTGTSLLTGP_ 0 0 0 ENSG00000256713|ENST00000312403|PGA5;ENSG00000229859|ENST00000325558|PGA3;ENSG00000229183|ENST00000378149|PGA4 ENSG00000256713|ENST00000312403|PGA5 ENSG00000256713|ENST00000312403|PGA5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2445068359375 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 25.158 1 23.305 22.805 23.805 -1.8534 0 0 0 0.14213 1 4121 4121 37.974 0 1 7922 7802 4908 4912 8164 8164 -0.005428329272831434 DTHPAHQTH 9 Unmodified _DTHPAHQTH_ 0 0 0 ENST00000445369.2_1_16:3063106-3063379:+|nuORF ENST00000445369.2_1_16:3063106-3063379:+|nuORF ENST00000445369.2_1_16:3063106-3063379:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26220703125 2 522.236304 1042.45806 0.328 0.00017129 -2.4326 -0.0012704 -2.1046 -0.0010991 522.2351393104286 39.222 0.45027 39.222 39.059 39.509 0 22 12 3 0 0 0 0.67531 1 7331 7331 7.9102 2.1497 1 1757500 7923 9931 4909 4913 8165 8165 -0.061475300586153026 DTHPDHQDI 9 Unmodified _DTHPDHQDI_ 0 0 0 ARHGEF6|p.T559Nfs*7|1|0.45|ENSG00000129675|chrX:136680759-136680760|-/T|frameshift_variant;ENSG00000129675|ENST00000250617|ARHGEF6;nc|ENSG00000129675|Q15052-2|ARHGEF6 ARHGEF6|p.T559Nfs*7|1|0.45|ENSG00000129675|chrX:136680759-136680760|-/T|frameshift_variant ARHGEF6|p.T559Nfs*7|1|0.45|ENSG00000129675|chrX:136680759-136680760|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2122497558594 3 359.82471 1076.4523 0.25999 9.355E-05 0.47384 0.0001705 0.73383 0.00026405 359.82485425756283 66.282 0.41543 62.786 62.453 62.868 -3.4965 13 11 2 0 0 0 0.84582 1 12416 12416 8.1555 6.5029 1 830790 7924 215 4910 4914 8166 8166 -0.082866733609535 DTHQAWAT 8 Unmodified _DTHQAWAT_ 0 0 0 REV__ENST00000525284.5_1_15:101565016-101602660:+|nuORF REV__ENST00000525284.5_1_15:101565016-101602660:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2571716308594 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 104.34 1 100.29 99.788 100.79 -4.0543 0 0 0 0.21486 1 20065 20065 12.532 0 1 + 7925 17173 4911 4915 8167 8167 -0.06317122210202797 DTIADLPDP 9 Unmodified _DTIADLPDP_ 0 0 0 ENSG00000102195|ENST00000218316|GPR50 ENSG00000102195|ENST00000218316|GPR50 ENSG00000102195|ENST00000218316|GPR50 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73187255859375 2 478.732197 955.449842 -0.2494 -0.00011939 1.0838 0.00051886 0.83443 0.00039947 478.7326417747176 105.35 1.4033 101.08 100.18 101.59 -4.2638 66 39 2 0 0 0 0.26282 1 20566 20566 0.40827 0 1 1897600 7926 2115 4912 4916 8168 8168 -0.02966521818621004 DTIDDNRI 8 Unmodified _DTIDDNRI_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1;REV__nc|ENSG00000151914|Q03001|DST REV__ENSG00000127603|ENST00000564288|MACF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2317199707031 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 101.18 1 101.18 100.68 101.68 0 0 0 0 0.21323 1 19856 19856 14.582 2.0501 1 + 7927 15894;24099 4913 4917 8169 8169 -0.030568877298492225 DTIGRTEK 8 Unmodified _DTIGRTEK_ 0 0 0 ENST00000464646.1_1_6:5002375-5002459:-|nuORF ENST00000464646.1_1_6:5002375-5002459:-|nuORF ENST00000464646.1_1_6:5002375-5002459:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23321533203125 2 460.245806 918.47706 0.235 0.00010816 1.8524 0.00085254 2.0874 0.0009607 460.2466528198314 32.362 0.41848 32.362 32.153 32.571 0 17 11 2 0 0 0 0.5707 3 5891 5852;5891;5898 24.021 3.5669 1 798620 7928 10112 4914 4918 8170;8171;8172 8171 0.014560065124328503 DTIGRTEK 8 Unmodified _DTIGRTEK_ 0 0 0 ENST00000464646.1_1_6:5002375-5002459:-|nuORF ENST00000464646.1_1_6:5002375-5002459:-|nuORF ENST00000464646.1_1_6:5002375-5002459:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2472229003906 2 460.245806 918.47706 -0.2636 -0.00012132 2.3263 0.0010707 2.0627 0.00094935 460.246867418129 34.561 0.44914 32.244 32.083 32.533 -2.3175 17 12 2 0 0 0 0.39104 1 6346 6346 32.786 0.66872 1 837870 7929 10112 4914 4918 8173 8173 0.014560065124328503 DTIGRTEK 8 Unmodified _DTIGRTEK_ 0 0 0 ENST00000464646.1_1_6:5002375-5002459:-|nuORF ENST00000464646.1_1_6:5002375-5002459:-|nuORF ENST00000464646.1_1_6:5002375-5002459:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24664306640625 2 460.245806 918.47706 0.14009 6.4475E-05 1.8433 0.00084839 1.9834 0.00091286 460.2466864624741 34.519 0.45087 32.267 32.012 32.463 -2.2527 22 12 2 0 0 0 0.55554 1 6074 6074 24.991 2.2547 1 796470 7930 10112 4914 4918 8174 8174 0.014560065124328503 DTIKQLFSVT 10 Unmodified _DTIKQLFSVT_ 0 0 0 REV__nc|ENSG00000072571|O75330-4|HMMR REV__nc|ENSG00000072571|O75330-4|HMMR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3370361328125 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 79.849 1 76.044 75.544 76.544 -3.8048 0 0 0 0.22588 1 15152 15152 6.2058 0 1 + 7931 14288 4915 4919 8175 8175 0.05410263957674033 DTIKYFKK 8 Unmodified _DTIKYFKK_ 0 0 0 PROKR1|p.V350I|1|0.36|ENSG00000169618|chr2:68655442-68655442|G/A|missense_variant PROKR1|p.V350I|1|0.36|ENSG00000169618|chr2:68655442-68655442|G/A|missense_variant PROKR1|p.V350I|1|0.36|ENSG00000169618|chr2:68655442-68655442|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.20147705078125 3 348.20257 1041.58588 NaN NaN NaN NaN NaN NaN NaN 75.866 1 72.451 71.951 72.951 -3.4151 0 0 0 0.21486 1 14801 14801 3.5965 0 1 7932 12830 4916 4920 8176 8176 0.0667521748271156 DTILCDLKY 9 Unmodified _DTILCDLKY_ 0 0 0 REV__ENST00000480758.1_1_1:92498118-92508548:+|nuORF REV__ENST00000480758.1_1_1:92498118-92508548:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7764282226562 2 542.273175 1082.5318 0.18785 0.00010187 -0.10783 -5.8472E-05 0.080021 4.3393E-05 542.2730581661076 63.353 1.0929 59.937 59.295 60.388 -3.4158 55 30 4 0 0 0 0.31714 1 11773 11773 30.637 1.555 1 6872800 + 7933 18267 4917 4921 8177 8177 -0.006167427311766005 DTILCDLKY 9 Unmodified _DTILCDLKY_ 0 0 0 REV__ENST00000480758.1_1_1:92498118-92508548:+|nuORF REV__ENST00000480758.1_1_1:92498118-92508548:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.273175 1082.5318 0.027994 1.518E-05 0.06447 3.496E-05 0.092463 5.014E-05 542.2731844803643 59.541 0.99766 59.541 59.176 60.174 0 -0.1615 0.00019796 NaN 30.637 73 27 3 NaN NaN NaN NaN 0 NaN NaN 0 11257000 + 7934 18267 4917 4921 -0.006167427311766005 DTILCDLKY 9 Unmodified _DTILCDLKY_ 0 0 0 REV__ENST00000480758.1_1_1:92498118-92508548:+|nuORF REV__ENST00000480758.1_1_1:92498118-92508548:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.273175 1082.5318 0.32277 0.00017503 -0.2503 -0.00013573 0.072466 3.9296E-05 542.2730232899921 62.887 0.58506 59.63 59.226 59.811 -3.2567 -0.072646 -0.00014342 NaN 30.637 41 16 3 NaN NaN NaN NaN 0 NaN NaN 0 8854600 + 7935 18267 4917 4921 -0.006167427311766005 DTINLTITA 9 Unmodified _DTINLTITA_ 0 0 0 REV__tr|U7SZW8|U7SZW8_FUSNUCopGfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00729PE=4SV=1 REV__tr|U7SZW8|U7SZW8_FUSNUCopGfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00729PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2529296875 2 481.263665 960.512776 NaN NaN NaN NaN NaN NaN NaN 67.864 1 64.537 64.037 65.037 -3.3268 0 0 0 0.21844 1 12803 12803 18.146 0 1 + 7936 25257 4918 4922 8178 8178 0.030940439694177257 DTIQVFQDT 9 Unmodified _DTIQVFQDT_ 0 0 0 REV__CPD|p.P638T|1|0.11|ENSG00000108582|chr17:30427453-30427453|C/A|missense_variant REV__CPD|p.P638T|1|0.11|ENSG00000108582|chr17:30427453-30427453|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2830810546875 2 533.756204 1065.49785 0.27595 0.00014729 -1.0847 -0.00057898 -0.80879 -0.0004317 533.7559201260165 62.376 0.62858 59.136 58.929 59.557 -3.2395 21 17 2 0 0 0 0.73268 1 11728 11728 24.021 3.5669 1 1086800 + 7937 13567 4919 4923 8179 8179 -0.03227447898552782 DTITIDANV 9 Unmodified _DTITIDANV_ 0 0 0 REV__ENSG00000162378|ENST00000294353|ZYG11B REV__ENSG00000162378|ENST00000294353|ZYG11B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2459411621094 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 103.05 1 99.028 98.528 99.528 -4.0212 0 0 0 0.16428 1 19810 19810 28.487 0 1 + 7938 17491 4920 4924 8180 8180 -0.005428329272831434 DTITIEPTVY 10 Unmodified _DTITIEPTVY_ 0 0 0 REV__ENSG00000232434|ENST00000436881|AJM1 REV__ENSG00000232434|ENST00000436881|AJM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3270263671875 2 576.295162 1150.57577 NaN NaN NaN NaN NaN NaN NaN 127.57 1 122.78 122.28 123.28 -4.7958 0 0 0 0.22588 1 24485 24485 10.824 1.4408 1 + 7939 19753 4921 4925 8181 8181 0.006505649668270053 DTIWLGWA 8 Unmodified _DTIWLGWA_ 0 0 0 REV__ENST00000568223.6_1_16:769319-769580:+|nuORF REV__ENST00000568223.6_1_16:769319-769580:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2431335449219 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 28.431 1 28.431 27.931 28.931 0 0 0 0 0.19492 1 5047 5047 26.341 0 1 + 7940 23141 4922 4926 8182 8182 -0.011298866482775338 DTKAEPSH 8 Unmodified _DTKAEPSH_ 0 0 0 ENSG00000106246|ENST00000292478|PTCD1;PTCD1|p.I598Hfs*42|1|0.12|ENSG00000106246|chr7:99423904-99423905|-/A|frameshift_variant ENSG00000106246|ENST00000292478|PTCD1 ENSG00000106246|ENST00000292478|PTCD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 443.7041320800781 2 442.709057 883.40356 0.15693 6.9476E-05 0.012677 5.6124E-06 0.16961 7.5089E-05 442.70902557923745 20.352 0.5613 18.955 18.653 19.214 -1.3966 37 15 3 0 0 0 8448 1 3408 3408 3.5871 0 1 2739300 7941 2367 4923 4927 8183 8183 -0.042805419300407266 DTKERHRVY 9 Unmodified _DTKERHRVY_ 0 0 0 KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549;nc|ENSG00000122778|Q9HCM3-3|KIAA1549;nc|ENSG00000122778|Q9HCM3-4|KIAA1549 KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2782592773438 2 602.315086 1202.61562 NaN NaN NaN NaN NaN NaN NaN 44.052 1 41.304 40.804 41.804 -2.7475 0 0 0 0.23508 1 7969 7969 10.824 1.4408 1 7942 3241 4924 4928 8184 8184 0.022415494807546565 DTKKALCH 8 Unmodified _DTKKALCH_ 0 0 0 REV__ENST00000522562.5_1_5:71523001-71533927:-|nuORF REV__ENST00000522562.5_1_5:71523001-71533927:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23895263671875 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 80.13 1 76.454 75.954 76.954 -3.676 0 0 0 0.21486 1 15272 15272 9.3474 0.75416 1 + 7943 15325 4925 4929 8185 8185 0.003732718485252917 DTKLGLWF 8 Unmodified _DTKLGLWF_ 0 0 0 REV__ENST00000354670.8_1_15:40382930-40383443:-|nuORF REV__ENST00000354670.8_1_15:40382930-40383443:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26409912109375 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 49.991 1 46.984 46.484 47.484 -3.0068 0 0 0 0.21181 1 9177 9177 15.768 1.8622 1 + 7944 20781 4926 4930 8186 8186 0.027349729028514957 DTKPIHLRGD 10 Unmodified _DTKPIHLRGD_ 0 0 0 REV__ENST00000609118.1_1_1:111506079-111506259:+|nuORF REV__ENST00000609118.1_1_1:111506079-111506259:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3136596679688 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 37.257 1 34.919 34.419 35.419 -2.3375 0 0 0 0.22588 1 6589 6589 6.2058 0 1 + 7945 23484 4927 4931 8187 8187 0.04019031249231375 DTKRRHFFSKF 11 Unmodified _DTKRRHFFSKF_ 0 0 0 REV__PEAK1|p.R933H|1|0.4|ENSG00000173517|chr15:77179129-77179129|C/T|missense_variant REV__PEAK1|p.R933H|1|0.4|ENSG00000173517|chr15:77179129-77179129|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2655029296875 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 86.593 1 86.593 86.093 87.093 0 0 0 0 0.22632 1 16901 16901 0.172 0 1 + 7946 24452 4928 4932 8188 8188 0.05834048739961872 DTLAHVLYY 9 Unmodified _DTLAHVLYY_ 0 0 0 POLR2B|p.R743C|1|0.05|ENSG00000047315|chr4:57017632-57017632|C/T|missense_variant;POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B POLR2B|p.R743C|1|0.05|ENSG00000047315|chr4:57017632-57017632|C/T|missense_variant POLR2B|p.R743C|1|0.05|ENSG00000047315|chr4:57017632-57017632|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7793579101562 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 21.648 1 20.264 19.764 20.764 -1.3847 0 0 0 0.19691 1 3417 3417 0.40827 0 1 7947 1214 4929 4933 8189 8189 0.0013803672338781325 DTLANAGVL 9 Unmodified _DTLANAGVL_ 0 0 0 ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant;ENSG00000198597|ENST00000355537|ZNF536 ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2212219238281 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 71.239 1 67.772 67.272 68.272 -3.467 0 0 0 0.21848 1 13500 13500 18.135 3.5533 1 7948 7462 4930 4934 8190 8190 0.019015056264720442 DTLASGNPV 9 Unmodified _DTLASGNPV_ 0 0 0 REV__nc|ENSG00000198373|O00308-2|WWP2 REV__nc|ENSG00000198373|O00308-2|WWP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2174377441406 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 58.606 1 55.401 54.901 55.901 -3.2052 0 0 0 0.23508 1 10939 10939 12.532 0.89125 1 + 7949 19409 4931 4935 8191 8191 -0.01735371270228825 DTLDLEEDP 9 Unmodified _DTLDLEEDP_ 0 0 0 ENSG00000158863|ENST00000289921|FHIP2B;ENST00000462914.3_1_8:21957359-21958496:+|nuORF;ENST00000491733.2_1_8:21958038-21958496:+|nuORF ENSG00000158863|ENST00000289921|FHIP2B ENSG00000158863|ENST00000289921|FHIP2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6890258789062 2 523.729852 1045.44515 NaN NaN NaN NaN NaN NaN NaN 19.323 1 19.323 18.823 19.823 0 0 0 0 0.23508 1 3154 3154 7.2892 2.0586 1 7950 5182 4932 4936 8192 8192 -0.075754507520287 DTLDLLYHP 9 Unmodified _DTLDLLYHP_ 0 0 0 REV__ITIH6|p.Q800Rfs*102|1|0.21|ENSG00000102313|chrX:54757676-54757676|G/-|frameshift_variant REV__ITIH6|p.Q800Rfs*102|1|0.21|ENSG00000102313|chrX:54757676-54757676|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7743530273438 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 62.804 1 59.552 59.052 60.052 -3.2522 0 0 0 0.15147 1 11777 11777 30.225 4.8255 1 + 7951 23683 4933 4937 8193 8193 -2.2671392343909247E-05 DTLDRRRY 8 Unmodified _DTLDRRRY_ 0 0 0 REV__RLF|p.H728Tfs*20|1|0.42|ENSG00000117000|chr1:40236880-40236880|T/-|frameshift_variant REV__RLF|p.H728Tfs*20|1|0.42|ENSG00000117000|chr1:40236880-40236880|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7908325195312 2 547.788704 1093.56285 NaN NaN NaN NaN NaN NaN NaN 126.92 1 122.22 121.72 122.72 -4.6998 0 0 0 0.17294 1 24415 24415 34.187 0.084896 1 + 7952 15511 4934 4938 8194 8194 0.019815914179389438 DTLFGGLK 8 Unmodified _DTLFGGLK_ 0 0 0 nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2372741699219 2 425.737086 849.459619 0.087088 3.7076E-05 0.44367 0.00018889 0.53076 0.00022596 425.73703713546803 71.324 0.38476 67.857 67.768 68.152 -3.467 14 10 2 0 0 0 0.96284 1 13529 13529 8.5933 0 1 686190 7953 1263 4935 4939 8195 8195 0.028867109774409982 DTLFGGLK 8 Unmodified _DTLFGGLK_ 0 0 0 nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 425.737086 849.459619 -0.27763 -0.0001182 0.59126 0.00025172 0.31364 0.00013353 425.73719712743986 71.212 0.4956 67.963 67.67 68.166 -3.2492 0.052888 4.9057E-05 NaN 4.756 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1283400 7954 1263 4935 4939 0.028867109774409982 DTLGWSVAA 9 Unmodified _DTLGWSVAA_ 0 0 0 REV__nc|ENSG00000115750|Q53T94-2|TAF1B REV__nc|ENSG00000115750|Q53T94-2|TAF1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2313537597656 2 460.229625 918.444697 0.7632 0.00035125 1.1341 0.00052193 1.8973 0.00087318 460.2310477008135 23.596 0.34733 22.043 21.904 22.252 -1.5532 14 9 2 0 0 0 0.62102 1 4109 4109 11.64 3.047 1 322880 + 7955 15446 4936 4940 8196 8196 -0.017787808905723068 DTLGWSVAA 9 Unmodified _DTLGWSVAA_ 0 0 0 REV__nc|ENSG00000115750|Q53T94-2|TAF1B REV__nc|ENSG00000115750|Q53T94-2|TAF1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2386779785156 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 23.843 1 22.055 21.555 22.555 -1.7886 0 0 0 0.23508 1 3853 3853 11.64 3.047 1 + 7956 15446 4936 4940 8197 8197 -0.017787808905723068 DTLHTVALS 9 Unmodified _DTLHTVALS_ 0 0 0 KLHL32|p.G405Afs*50|1|0.11|ENSG00000186231|chr6:97114365-97114365|G/-|frameshift_variant;nc|ENSG00000186231|Q96NJ5-2|KLHL32;ENSG00000186231|ENST00000369261|KLHL32;nc|ENSG00000186231|Q96NJ5-3|KLHL32 KLHL32|p.G405Afs*50|1|0.11|ENSG00000186231|chr6:97114365-97114365|G/-|frameshift_variant KLHL32|p.G405Afs*50|1|0.11|ENSG00000186231|chr6:97114365-97114365|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7325134277344 2 478.756007 955.497461 0.040262 1.9276E-05 -0.1318 -6.31E-05 -0.091539 -4.3825E-05 478.75592761459 94.857 0.63445 90.807 90.5 91.134 -4.0496 38 17 3 0 0 0 0.36034 1 18599 18599 22.736 0 1 2391900 7957 7047 4937 4941 8198 8198 0.01793177172248761 DTLIEHKVEP 10 Unmodified _DTLIEHKVEP_ 0 0 0 REV__ENSG00000134899|ENST00000652225|ERCC5 REV__ENSG00000134899|ENST00000652225|ERCC5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2628784179688 2 590.814053 1179.61355 0.73844 0.00043628 -0.42988 -0.00025398 0.30856 0.0001823 590.8139922371645 91.047 0.4866 86.953 86.708 87.194 -4.0946 22 13 2 0 0 0 0.46818 1 17361 17361 21.537 0 1 1539600 + 7958 16235 4938 4942 8199 8199 0.03093075952278923 DTLILLPIP 9 Unmodified _DTLILLPIP_ 0 0 0 REV__ENST00000546000.1_1_11:115047196-115049577:-|nuORF REV__ENST00000546000.1_1_11:115047196-115049577:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.207275390625 3 332.210954 993.611034 NaN NaN NaN NaN NaN NaN NaN 120.7 1 116.18 115.68 116.68 -4.5221 0 0 0 0.23508 1 23797 23797 2.7352 2.2769 1 + 7959 22892 4939 4943 8200 8200 0.11397272285284998 DTLILLPIP 9 Unmodified _DTLILLPIP_ 0 0 0 REV__ENST00000546000.1_1_11:115047196-115049577:-|nuORF REV__ENST00000546000.1_1_11:115047196-115049577:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.21197509765625 3 332.210954 993.611034 NaN NaN NaN NaN NaN NaN NaN 120.94 1 116.42 115.92 116.92 -4.5221 0 0 0 0.23508 1 23843 23843 2.7352 1.4057 1 + 7960 22892 4939 4943 8201 8201 0.11397272285284998 DTLIWVKF 8 Unmodified _DTLIWVKF_ 0 0 0 REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.18658447265625 3 341.195416 1020.56442 NaN NaN NaN NaN NaN NaN NaN 67.649 1 64.322 63.822 64.822 -3.3268 0 0 0 0.21486 1 12759 12759 10.824 6.4947 1 + 7961 15426 4940 4944 8202 8202 0.054958324539938985 DTLKALHKII 10 Unmodified _DTLKALHKII_ 0 0 0 REV__ENST00000543938.5_1_15:83328314-83349061:-|nuORF REV__ENST00000543938.5_1_15:83328314-83349061:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3136596679688 2 576.360973 1150.70739 NaN NaN NaN NaN NaN NaN NaN 127.68 1 122.89 122.39 123.39 -4.7958 0 0 0 0.22588 1 24507 24507 3.5965 0.31518 1 + 7962 14897 4941 4945 8203 8203 0.1380683984521056 DTLLSPDSSF 10 Unmodified _DTLLSPDSSF_ 0 0 0 ENSG00000090889|ENST00000374403|KIF4A;nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000226650|ENST00000435029|KIF4B ENSG00000090889|ENST00000374403|KIF4A;ENSG00000226650|ENST00000435029|KIF4B ENSG00000090889|ENST00000374403|KIF4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2757568359375 2 541.256037 1080.49752 0.3345 0.00018105 -2.6528 -0.0014359 -2.3183 -0.0012548 541.2539848361434 92.626 0.8691 88.482 87.862 88.731 -4.1435 34 24 2 0 0 0 0.13946 1 17558 17558 49.933 6.0747 1 2221800 7963 1794;7792 4942 4946 8204 8204 -0.03950867618414122 DTLLSPDSSF 10 Unmodified _DTLLSPDSSF_ 0 0 0 ENSG00000090889|ENST00000374403|KIF4A;nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000226650|ENST00000435029|KIF4B ENSG00000090889|ENST00000374403|KIF4A;ENSG00000226650|ENST00000435029|KIF4B ENSG00000090889|ENST00000374403|KIF4A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 541.256037 1080.49752 0.18132 9.8143E-05 0.80778 0.00043721 0.9891 0.00053536 541.2566981152611 92.395 0.44279 88.587 88.276 88.719 -3.8083 0.052194 0.00087075 NaN 49.933 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1854100 7964 1794;7792 4942 4946 -0.03950867618414122 DTLMRWKSS 9 Unmodified _DTLMRWKSS_ 0 0 0 REV__nc|ENSG851|Q9QC07|ERVK-18_pol REV__nc|ENSG851|Q9QC07|ERVK-18_pol MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2182922363281 3 375.190336 1122.54918 NaN NaN NaN NaN NaN NaN NaN 51.037 1 47.986 47.486 48.486 -3.0517 0 0 0 0.23508 1 9395 9395 4.897 0 1 + 7965 24335 4943 4947 8205 8205 -0.007194024055024784 DTLNKEEI 8 Unmodified _DTLNKEEI_ 0 0 0 REV__EPM2AIP1|p.D451Vfs*16|1|0.04|ENSG00000178567|chr3:36991726-36991727|-/CCATTTAA|frameshift_variant REV__EPM2AIP1|p.D451Vfs*16|1|0.04|ENSG00000178567|chr3:36991726-36991727|-/CCATTTAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2450866699219 2 481.245472 960.476391 0.3191 0.00015356 -0.83892 -0.00040372 -0.51982 -0.00025016 481.2447600690311 100.98 0.5555 96.994 96.789 97.345 -3.9895 23 15 2 0 0 0 0.58432 1 19387 19387 23.148 0 1 592860 + 7966 18610 4944 4948 8206 8206 -0.0054283292729451205 DTLNMDIKH 9 Unmodified _DTLNMDIKH_ 0 0 0 REV__ENSG00000101310|ENST00000650089|SEC23B REV__ENSG00000101310|ENST00000650089|SEC23B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77490234375 2 543.766049 1085.51754 NaN NaN NaN NaN NaN NaN NaN 58.525 1 55.274 54.774 55.774 -3.2517 0 0 0 0.21065 1 10878 10878 20.454 0 1 + 7967 14775 4945 4949 8207 8207 -0.02179395159487285 DTLNNWSI 8 Unmodified _DTLNNWSI_ 0 0 0 CCDC73|p.R1066Efs*13|1|0.08|ENSG00000186714|chr11:32602859-32602859|C/-|frameshift_variant;ENSG00000186714|ENST00000335185|CCDC73 CCDC73|p.R1066Efs*13|1|0.08|ENSG00000186714|chr11:32602859-32602859|C/-|frameshift_variant CCDC73|p.R1066Efs*13|1|0.08|ENSG00000186714|chr11:32602859-32602859|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2547302246094 2 481.732532 961.45051 -0.048114 -2.3178E-05 0.74355 0.00035819 0.69544 0.00033502 481.732621600468 73.814 0.33989 70.45 70.299 70.639 -3.3643 14 9 2 0 0 0 0.72565 1 14420 14420 34.102 1.9855 1 1371100 7968 424 4946 4950 8208 8208 -0.03175682378889633 DTLNRELTFER 11 Unmodified _DTLNRELTFER_ 0 0 0 REV__ENST00000598377.2_2_19:53715316-53715451:+|nuORF REV__ENST00000598377.2_2_19:53715316-53715451:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2501525878906 3 465.240524 1392.69974 NaN NaN NaN NaN NaN NaN NaN 33.522 1 31.375 30.875 31.875 -2.1468 0 0 0 0.22632 1 5850 5850 0.11104 0 1 + 7969 23393 4947 4951 8209 8209 0.019100357869774598 DTLQSVASV 9 Unmodified _DTLQSVASV_ 0 0 0 REV__AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant REV__AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2400207519531 2 460.24019 918.465826 0.42721 0.00019662 -1.1031 -0.0005077 -0.6759 -0.00031108 460.23971209266887 75.905 0.55476 75.905 75.681 76.236 0 26 15 2 0 0 0 0.17935 1 14794 14794 39.95 1.7741 1 2863600 + 7970 12995 4948 4952 8210 8210 0.0033318441828669165 DTLQSVASV 9 Unmodified _DTLQSVASV_ 0 0 0 REV__AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant REV__AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2399597167969 2 460.24019 918.465826 -0.054096 -2.4897E-05 -0.48561 -0.0002235 -0.5397 -0.00024839 460.2396973016305 79.196 0.70587 75.686 75.483 76.189 -3.5102 30 19 2 0 0 0 0.13932 1 15521 15521 45.7 1.9272 1 2914500 + 7971 12995 4948 4952 8211 8211 0.0033318441828669165 DTLQTLPGA 9 Unmodified _DTLQTLPGA_ 0 0 0 ENST00000587213.5_1_19:56159450-56160182:+|nuORF;ENST00000593069.1_2_19:56159450-56160373:+|nuORF ENST00000587213.5_1_19:56159450-56160182:+|nuORF ENST00000587213.5_1_19:56159450-56160182:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2322998046875 2 458.242732 914.470912 0.039026 1.7883E-05 0.44459 0.00020373 0.48361 0.00022161 458.2427716618523 37.373 0.38198 35.025 34.856 35.238 -2.3479 18 10 2 0 0 0 0.48644 1 6595 6595 20.454 2.3073 1 978960 7972 11560 4949 4953 8212 8212 0.010254882809135779 DTLRLMDP 8 Unmodified _DTLRLMDP_ 0 0 0 ENSG00000175764|ENST00000321582|TTLL11 ENSG00000175764|ENST00000321582|TTLL11 ENSG00000175764|ENST00000321582|TTLL11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2456359863281 2 480.744585 959.474617 0.037848 1.8195E-05 -0.24304 -0.00011684 -0.20519 -9.8643E-05 480.74454772189296 27.531 0.8916 27.531 27.15 28.042 0 54 25 3 0 0 0 0.58432 1 4901 4901 23.148 0 1 1981600 7973 6431 4950 4954 8213 8213 -0.00674165216878464 DTLVKIYK 8 Unmodified _DTLVKIYK_ 0 0 0 SLC25A32|p.Y176H|1|0.24|ENSG00000164933|chr8:103403190-103403190|A/G|missense_variant;ENSG00000164933|ENST00000297578|SLC25A32 SLC25A32|p.Y176H|1|0.24|ENSG00000164933|chr8:103403190-103403190|A/G|missense_variant SLC25A32|p.Y176H|1|0.24|ENSG00000164933|chr8:103403190-103403190|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25494384765625 2 490.294768 978.574983 NaN NaN NaN NaN NaN NaN NaN 32.629 1 30.398 29.898 30.898 -2.2305 0 0 0 0.21486 1 5951 5951 5.2307 0 1 7974 5577 4951 4955 8214 8214 0.08483815108411363 DTMADISPI 9 Unmodified _DTMADISPI_ 0 0 0 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2390441894531 2 481.7286 961.442648 0.25794 0.00012426 -0.49692 -0.00023938 -0.23898 -0.00011512 481.72842356780296 105.83 0.34589 105.83 105.64 105.98 0 14 9 2 0 0 0 0.79204 1 20796 20796 1.6526 0 1 1068100 7975 8025 4952 4956 8215 8215 -0.039615776906771316 DTMLDRGF 8 Unmodified _DTMLDRGF_ 0 0 0 REV__nc|ENSG00000197043|P08133-2|ANXA6 REV__nc|ENSG00000197043|P08133-2|ANXA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7250671386719 2 477.72111 953.427666 -0.040951 -1.9563E-05 1.3116 0.00062656 1.2706 0.000607 477.7217010920778 76.089 0.74144 72.674 72.297 73.039 -3.4151 53 20 3 0 0 0 0.70613 1 14796 14796 13.508 0 1 17553000 + 7976 19298 4953 4957 8216 8216 -0.050910247680121756 DTNENVDIY 9 Unmodified _DTNENVDIY_ 0 0 0 tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1 tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1 tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2743530273438 2 541.735468 1081.45638 0.71639 0.00038809 -0.57032 -0.00030897 0.14607 7.9129E-05 541.7350677427995 78.681 0.66376 78.681 78.225 78.889 0 31 18 2 0 0 0 0.80521 1 15285 15285 6.7232 0 1 1358800 7977 26002 4954 4958 8217 8217 -0.08108628657873851 DTNKGDIAYTY 11 Unmodified _DTNKGDIAYTY_ 0 0 0 REV__tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1 REV__tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7566528320312 2 630.790775 1259.567 NaN NaN NaN NaN NaN NaN NaN 117.09 1 112.73 112.23 113.23 -4.3585 0 0 0 0.21129 1 22540 22540 16.149 6.766 1 + 7978 25296 4955 4959 8218 8218 -0.05240408669669705 DTNLNLKY 8 Unmodified _DTNLNLKY_ 0 0 0 tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1 tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1 tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27520751953125 2 490.756007 979.497461 -0.30482 -0.00014959 -1.6396 -0.00080463 -1.9444 -0.00095422 490.75556092690016 50.259 0.99534 47.252 47.077 48.072 -3.0068 32 28 2 0 0 0 0.66066 1 9373 9373 28.487 3.813 1 817240 7979 26260 4956 4960 8219 8219 0.006891771722393969 DTNRLLGEF 9 Unmodified _DTNRLLGEF_ 0 0 0 REV__ENST00000418974.1_1:144284377-144311511:-|nuORF REV__ENST00000418974.1_1:144284377-144311511:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2627563476562 2 532.772188 1063.52982 0.46097 0.00024559 -1.3969 -0.00074422 -0.9359 -0.00049862 532.7712599759568 101.23 0.69904 97.242 97.066 97.766 -3.9895 41 19 3 0 0 0 0.24263 1 19524 19524 34.932 1.4872 1 4902300 + 7980 21490 4957 4961 8220 8220 0.0005996457523451681 DTNSDHTYE 9 Unmodified _DTNSDHTYE_ 0 0 0 REV__ENSG00000197329|ENST00000358912|PELI1 REV__ENSG00000197329|ENST00000358912|PELI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2750244140625 2 541.207075 1080.3996 0.27558 0.00014915 -2.6973 -0.0014598 -2.4217 -0.0013107 541.2068911937852 116.12 0.13695 111.64 111.59 111.72 -4.486 6 3 2 0 0 0 0.87634 1 22887 22887 1.4819 0 1 708720 + 7981 19325 4958 4962 8221 8221 -0.13738676214416046 DTNVIWYIQ 9 Unmodified _DTNVIWYIQ_ 0 0 0 TTC9|p.R202W|1|0.07|ENSG00000133985|chr14:70671090-70671090|C/T|missense_variant TTC9|p.R202W|1|0.07|ENSG00000133985|chr14:70671090-70671090|C/T|missense_variant TTC9|p.R202W|1|0.07|ENSG00000133985|chr14:70671090-70671090|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32373046875 2 576.290214 1150.56587 NaN NaN NaN NaN NaN NaN NaN 32.033 1 30.007 29.507 30.507 -2.0264 0 0 0 0.23508 1 5545 5545 6.7232 0 1 7982 26533 4959 4963 8222 8222 -0.0033857824791994062 DTPDDFQLH 9 Unmodified _DTPDDFQLH_ 0 0 0 ENST00000460156.1_1_1:155207923-155208412:-|nuORF;ENST00000459805.5_1_1:155186646-155187358:-|nuORF;nc|ENSG00000177628|P04062-3|GBA1;ENST00000486197.5_1_1:155184905-155187358:-|nuORF;ENST00000566701.5_1_1:155184905-155187601:-|nuORF;nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1 ENST00000460156.1_1_1:155207923-155208412:-|nuORF ENST00000460156.1_1_1:155207923-155208412:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7774658203125 2 544.238178 1086.4618 0.19251 0.00010477 -0.069739 -3.7955E-05 0.12277 6.6818E-05 544.2380124213722 63.662 0.34524 60.246 60.009 60.354 -3.4158 13 9 2 0 0 0 0.74655 1 11870 11870 15.847 0 1 1309500 7983 6525 4960 4964 8223 8223 -0.07796905075429095 DTPFEHIA 8 Unmodified _DTPFEHIA_ 0 0 0 REV__SLC24A4|p.F255Sfs*40|1|0.26|ENSG00000140090|chr14:92449096-92449096|T/-|frameshift_variant REV__SLC24A4|p.F255Sfs*40|1|0.26|ENSG00000140090|chr14:92449096-92449096|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25616455078125 2 465.2218 928.429047 -0.028793 -1.3395E-05 0.26884 0.00012507 0.24005 0.00011168 465.22191074543696 48.031 0.66996 45.089 44.755 45.425 -2.9421 44 18 3 0 0 0 0.50973 1 8729 8729 24.674 0 1 4029500 + 7984 16559 4961 4965 8224 8224 -0.0380306740761398 DTPFGERGT 9 Unmodified _DTPFGERGT_ 0 0 0 REV__ENSG00000278129|ENST00000621650|ZNF8 REV__ENSG00000278129|ENST00000621650|ZNF8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25714111328125 2 490.227613 978.440674 0.24487 0.00012004 -0.28223 -0.00013835 -0.03736 -1.8315E-05 490.22750229766433 27.133 0.68382 27.133 26.807 27.49 0 28 19 2 0 0 0 0.64382 1 4736 4736 10.074 3.3508 1 766040 + 7985 19946 4962 4966 8225 8225 -0.04940870384268692 DTPGAGFCPP 10 Unmodified _DTPGAGFCPP_ 0 0 0 REV__ENST00000596708.1_3_19:59065591-59066278:-|nuORF REV__ENST00000596708.1_3_19:59065591-59066278:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2424011230469 2 481.207835 960.401117 NaN NaN NaN NaN NaN NaN NaN 42.456 1 42.456 41.956 42.956 0 0 0 0 0.22588 1 7942 7942 10.824 2.2306 1 + 7986 23384 4963 4967 8226 8226 -0.08066713659354718 DTPHGQLSLR 10 Unmodified _DTPHGQLSLR_ 0 0 0 REV__ENST00000505131.1_1_4:48384636-48389420:+|nuORF REV__ENST00000505131.1_1_4:48384636-48389420:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2065734863281 3 375.2 1122.57817 0.0086351 3.2399E-06 0.0077592 2.9112E-06 0.016394 6.1511E-06 375.19986900304673 47.687 0.73195 44.745 44.342 45.074 -2.9421 42 20 3 0 0 0 0.65512 1 8647 8647 15.739 2.6962 1 5739000 + 7987 15155 4964 4968 8227 8227 0.02178458215144019 DTPIREQHV 9 Unmodified _DTPIREQHV_ 0 0 0 nc|ENSG00000178199|A2A288-3|ZC3H12D;nc|ENSG00000178199|A2A288-4|ZC3H12D;ZC3H12D|p.H417Sfs*82|1|0.2|ENSG00000178199|chr6:149451018-149451019|-/CT|frameshift_variant;ENSG00000178199|ENST00000409806|ZC3H12D nc|ENSG00000178199|A2A288-3|ZC3H12D nc|ENSG00000178199|A2A288-3|ZC3H12D MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7777709960938 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 147.48 1 142.32 141.82 142.82 -5.1557 0 0 0 0.19669 1 28539 28539 0.40827 0 1 7988 6565 4965 4969 8228 8228 0.008587693238041538 DTPLKPSAQ 9 Unmodified _DTPLKPSAQ_ 0 0 0 FNBP4|p.K790Efs*7|1|0.34|ENSG00000109920|chr11:47724123-47724124|TT/-|frameshift_variant;FNBP4|p.G931Efs*17|1|0.32|ENSG00000109920|chr11:47722991-47722991|T/-|frameshift_variant;FNBP4|p.W950Vfs*7|1|0.22|ENSG00000109920|chr11:47720045-47720046|-/T|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4 FNBP4|p.K790Efs*7|1|0.34|ENSG00000109920|chr11:47724123-47724124|TT/-|frameshift_variant FNBP4|p.K790Efs*7|1|0.34|ENSG00000109920|chr11:47724123-47724124|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7375793457031 2 478.756007 955.497461 -0.095806 -4.5868E-05 -1.1858 -0.00056773 -1.2816 -0.00061359 478.75602745760375 47.274 1.9077 44.324 43.633 45.541 -2.9499 69 54 2 0 0 0 0.57447 1 8585 8585 14.838 1.7958 1 17176000 7989 2548 4966 4970 8229 8229 0.017931771722373924 DTPPSREK 8 Unmodified _DTPPSREK_ 0 0 0 ENST00000527128.5_1_9:100038963-100041679:+|nuORF ENST00000527128.5_1_9:100038963-100041679:+|nuORF ENST00000527128.5_1_9:100038963-100041679:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2395935058594 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 43.598 1 40.832 40.332 41.332 -2.7661 0 0 0 0.18898 1 7876 7876 28.487 5.3384 1 7990 10924 4967 4971 8230 8230 -0.005682800046088232 DTPQAEALA 9 Unmodified _DTPQAEALA_ 0 0 0 ENSG00000188730|ENST00000340652|VWC2 ENSG00000188730|ENST00000340652|VWC2 ENSG00000188730|ENST00000340652|VWC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.224853515625 2 458.224539 914.434526 -0.1941 -8.8942E-05 -0.63213 -0.00028966 -0.82623 -0.0003786 458.2241915209431 48.902 1.8648 46.03 44.873 46.738 -2.872 108 52 4 0 0 0 0.46882 1 9134 9134 21.537 1.1224 1 40719000 7991 7190 4968 4972 8231 8231 -0.026113886158213973 DTPVQFLRR 9 Unmodified _DTPVQFLRR_ 0 0 0 ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 378.1905212402344 3 377.88049 1130.61964 0.10708 4.0462E-05 -0.83015 -0.0003137 -0.72308 -0.00027324 378.21410917653105 83.15 0.17652 79.277 79.186 79.362 -3.8736 6 4 2 0 0 0 0.72996 1 15802 15802 4.897 0 1 338010 7992 2696 4969 4973 8232 8232 0.05955638974478461 DTQALLSAT 9 Unmodified _DTQALLSAT_ 0 0 0 SLC26A6|p.V540*|2|0.21|ENSG00000225697|chr3:48628696-48628696|C/-|frameshift_variant;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;ENST00000482282.5_1_3:48670520-48671236:-|nuORF;SLC26A6|p.A305Pfs*10|1|0.33|ENSG00000225697|chr3:48631297-48631297|C/-|frameshift_variant SLC26A6|p.V540*|2|0.21|ENSG00000225697|chr3:48628696-48628696|C/-|frameshift_variant SLC26A6|p.V540*|2|0.21|ENSG00000225697|chr3:48628696-48628696|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2425537109375 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 145.49 1 140.82 140.32 141.32 -4.6694 0 0 0 0.22962 1 28839 28839 14.838 0 1 7993 7787 4970 4974 8233 8233 0.0033318441828669165 DTQDLTEFL 9 Unmodified _DTQDLTEFL_ 0 0 0 BEND3|p.E692Rfs*21|1|0.28|ENSG00000178409|chr6:107069117-107069118|-/G|frameshift_variant;ENSG00000178409|ENST00000369042|BEND3 BEND3|p.E692Rfs*21|1|0.28|ENSG00000178409|chr6:107069117-107069118|-/G|frameshift_variant BEND3|p.E692Rfs*21|1|0.28|ENSG00000178409|chr6:107069117-107069118|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.272705078125 2 541.256037 1080.49752 0.7543 0.00040827 -1.253 -0.00067819 -0.4987 -0.00026992 541.2553556390476 79.346 0.79897 79.346 78.923 79.722 0 58 22 3 0 0 0 0.25183 2 15367 15362;15367 34.402 4.1769 1 15935000 7994 314 4971 4975 8234;8235 8235 -0.03950867618414122 DTQEHKAQ 8 Unmodified _DTQEHKAQ_ 0 0 0 ENSG00000187135|ENST00000335523|VSTM2B ENSG00000187135|ENST00000335523|VSTM2B ENSG00000187135|ENST00000335523|VSTM2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7248229980469 2 478.725238 955.435923 -0.02311 -1.1063E-05 -0.43527 -0.00020837 -0.45838 -0.00021944 478.724953224567 28.846 1.2893 28.846 28.252 29.541 0 66 36 3 0 0 0 0.71876 1 5148 5148 11.64 2.2572 1 2806300 7995 7098 4972 4976 8236 8236 -0.043577545270409246 DTQEHKAQ 8 Unmodified _DTQEHKAQ_ 0 0 0 ENSG00000187135|ENST00000335523|VSTM2B ENSG00000187135|ENST00000335523|VSTM2B ENSG00000187135|ENST00000335523|VSTM2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7272033691406 2 478.725238 955.435923 NaN NaN NaN NaN NaN NaN NaN 30.975 1 28.949 28.449 29.449 -2.0264 0 0 0 0.21404 1 5330 5330 13.906 2.2658 1 7996 7098 4972 4976 8237 8237 -0.043577545270409246 DTQFWAGHY 9 Unmodified _DTQFWAGHY_ 0 0 0 ENSG00000161243|ENST00000292853|FBXO27 ENSG00000161243|ENST00000292853|FBXO27 ENSG00000161243|ENST00000292853|FBXO27 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.205810546875 3 375.498046 1123.47231 -0.11735 -4.4066E-05 -3.2344 -0.0012145 -3.3518 -0.0012586 375.4968610776228 24.715 0.26531 24.715 24.58 24.846 0 10 7 2 0 0 0 0.87609 1 4247 4247 2.2828 0 1 575540 7997 5287 4973 4977 8238 8238 -0.08448877630326024 DTQHSRVL 8 Unmodified _DTQHSRVL_ 0 0 0 ENST00000479322.1_1_1:218607587-218614701:+|nuORF;ENSG00000092969|ENST00000366930|TGFB2;nc|ENSG00000092969|P61812-2|TGFB2;TGFB2|p.S356A|1|0.13|ENSG00000092969|chr1:218437476-218437476|T/G|missense_variant ENST00000479322.1_1_1:218607587-218614701:+|nuORF ENST00000479322.1_1_1:218607587-218614701:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72113037109375 2 478.251423 954.488293 0.62618 0.00029947 -0.70785 -0.00033853 -0.081671 -3.9059E-05 478.25120522993865 22.324 0.37649 20.849 20.66 21.037 -1.4742 23 10 3 0 0 0 0.5707 1 3785 3785 24.021 3.1494 1 793890 7998 1844 4974 4978 8239 8239 0.009228286065763314 DTQKKTLP 8 Unmodified _DTQKKTLP_ 0 0 0 REV__nc|ENSG00000169760|Q8N2Q7|NLGN1 REV__nc|ENSG00000169760|Q8N2Q7|NLGN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2483215332031 2 465.766374 929.518196 0.20889 9.7294E-05 -1.4549 -0.00067766 -1.246 -0.00058036 465.7660528508958 20.229 0.49326 18.833 18.653 19.146 -1.3966 23 13 2 0 0 0 0.9455 1 3406 3406 23.148 9.6405 1 298530 + 7999 24158 4975 4979 8240 8240 0.05061767551910634 DTQLVDEV 8 Unmodified _DTQLVDEV_ 0 0 0 REV__ENSG00000114857|ENST00000232978|NKTR REV__ENSG00000114857|ENST00000232978|NKTR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2405700683594 2 459.724372 917.434192 -0.081281 -3.7367E-05 0.68874 0.00031663 0.60746 0.00027927 459.72467051823236 80.305 0.58743 76.466 76.18 76.767 -3.8392 24 16 2 0 0 0 0.88497 1 15194 15194 6.1918 4.977 1 724870 + 8000 15392 4976 4980 8241 8241 -0.027828083356666866 DTQNRRGSL 9 Unmodified _DTQNRRGSL_ 0 0 0 REV__ENST00000601065.5_1_19:49588680-49589718:+|nuORF REV__ENST00000601065.5_1_19:49588680-49589718:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6931762695312 2 523.770511 1045.52647 0.17835 9.3415E-05 0.53214 0.00027872 0.71049 0.00037213 524.2713807615459 123.4 0.10803 123.4 123.31 123.42 0 4 2 2 0 0 0 0.77734 1 24321 24321 13.906 4.5586 1 887560 + 8001 23417 4977 4981 8242 8242 0.005527145212454343 DTQQVRLSP 9 Unmodified _DTQQVRLSP_ 0 0 0 nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179;GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant;GPR179|p.K1289Rfs*12|1|0.29|ENSG00000277399|chr17:38329703-38329703|T/-|frameshift_variant;GPR179|p.R1290Efs*59|1|0.25|ENSG00000277399|chr17:38329702-38329703|-/T|frameshift_variant nc|ENSG00000277399|Q6PRD1|GPR179 nc|ENSG00000277399|Q6PRD1|GPR179 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.278564453125 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 20.921 1 19.447 18.947 19.947 -1.4742 0 0 0 0.23508 1 3516 3516 5.7319 0 1 8002 8036 4978 4982 8243 8243 0.021153669495333816 DTQRPIMH 8 Unmodified _DTQRPIMH_ 0 0 0 REV__SPEF2|p.K183Nfs*16|1|0.07|ENSG00000152582|chr5:35644485-35644485|A/-|frameshift_variant REV__SPEF2|p.K183Nfs*16|1|0.07|ENSG00000152582|chr5:35644485-35644485|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.1802978515625 3 333.167643 996.481099 NaN NaN NaN NaN NaN NaN NaN 79.142 1 75.632 75.132 76.132 -3.5102 0 0 0 0.21486 1 15456 15456 7.2892 0.18751 1 + 8003 17114 4979 4983 8244 8244 -0.01728227265505211 DTRGLVDGP 9 Unmodified _DTRGLVDGP_ 0 0 0 REV__ENST00000529970.5_1_11:120278459-120348246:+|nuORF REV__ENST00000529970.5_1_11:120278459-120348246:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2501525878906 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 46.239 1 43.373 42.873 43.873 -2.8653 0 0 0 0.20155 1 8401 8401 23.148 1.4018 1 + 8004 13109 4980 4984 8245 8245 -0.005682800046088232 DTRIILVP 8 Unmodified _DTRIILVP_ 0 0 0 REV__ENST00000568706.1_1_16:1834024-1837680:+|nuORF REV__ENST00000568706.1_1_16:1834024-1837680:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 464.12384033203125 2 463.78711 925.559667 0.38708 0.00017952 -0.64379 -0.00029858 -0.25671 -0.00011906 463.7868689033299 21.377 0.28108 19.903 19.735 20.016 -1.4742 12 7 2 0 0 0 1.0249 1 3580 3580 2.5775 0.51773 1 622060 + 8005 23146 4981 4985 8246 8246 0.0939094831123839 DTRIILVP 8 Unmodified _DTRIILVP_ 0 0 0 REV__ENST00000568706.1_1_16:1834024-1837680:+|nuORF REV__ENST00000568706.1_1_16:1834024-1837680:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 463.78711 925.559667 -0.23388 -0.00010847 0.27892 0.00012936 0.045042 2.089E-05 463.78722430549163 21.304 0.24532 19.919 19.757 20.002 -1.3847 0.026679 0.000168 NaN 2.5775 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 545220 + 8006 23146 4981 4985 0.0939094831123839 DTRIILVP 8 Unmodified _DTRIILVP_ 0 0 0 REV__ENST00000568706.1_1_16:1834024-1837680:+|nuORF REV__ENST00000568706.1_1_16:1834024-1837680:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 463.78711 925.559667 -0.6966 -0.00032307 0.71695 0.00033251 0.020356 9.4408E-06 463.78736253594576 21.577 0.2448 19.856 19.74 19.985 -1.7211 -0.036974 0.00057432 NaN 2.5775 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 368720 + 8007 23146 4981 4985 0.0939094831123839 DTRRALLLL 9 Unmodified _DTRRALLLL_ 0 0 0 REV__ENSG00000070018|ENST00000261349|LRP6 REV__ENSG00000070018|ENST00000261349|LRP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5605163574219 3 357.560869 1069.66078 -0.26854 -9.6019E-05 0.30701 0.00010977 0.038467 1.3754E-05 357.56088497940516 82.349 0.52635 78.763 78.417 78.943 -3.586 20 14 2 0 0 0 0.59831 1 16045 16045 0.0033805 0 1 807680 + 8008 14247 4982 4986 8247 8247 0.1287340001395023 DTRRLPHPSSH 11 Unmodified _DTRRLPHPSSH_ 0 0 0 REV__MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant REV__MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.8916320800781 3 434.89357 1301.65888 NaN NaN NaN NaN NaN NaN NaN 24.293 1 22.704 22.204 23.204 -1.5892 0 0 0 0.23689 1 4225 4225 2.8433 0.21205 1 + 8009 23892 4983 4987 8248 8248 0.020117392580459637 DTRVHCCVY 9 Unmodified _DTRVHCCVY_ 0 0 0 ENSG00000140623|ENST00000268231|SEPTIN12 ENSG00000140623|ENST00000268231|SEPTIN12 ENSG00000140623|ENST00000268231|SEPTIN12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.779052734375 2 548.239144 1094.46373 0.31912 0.00017495 -0.77264 -0.00042359 -0.45352 -0.00024864 548.2386241095548 28.681 0.86935 26.925 26.531 27.4 -1.7552 84 24 5 0 0 0 0.86532 1 4787 4787 4.756 0.42677 1 3894800 8010 4317 4984 4988 8249 8249 -0.0797189086281378 DTRYAIGLIG 10 Unmodified _DTRYAIGLIG_ 0 0 0 REV__tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1 REV__tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 92.795 1 88.87 88.37 89.37 -3.9251 0 0 0 0.22588 1 18176 18176 4.4062 1.4109 1 + 8011 24999 4985 4989 8250 8250 0.046171279889904326 DTSCDCCNW 9 Unmodified _DTSCDCCNW_ 0 0 0 ENSG00000134216|ENST00000369740|CHIA;nc|ENSG00000134216|Q9BZP6-3|CHIA;nc|ENSG00000134216|Q9BZP6-2|CHIA ENSG00000134216|ENST00000369740|CHIA ENSG00000134216|ENST00000369740|CHIA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.700927734375 2 523.654252 1045.29395 NaN NaN NaN NaN NaN NaN NaN 159.91 1 155.11 154.61 155.61 -4.7952 0 0 0 0.23508 1 31795 31795 2.0598 2.0598 1 8012 3832 4986 4990 8251 8251 -0.22688374927565746 DTSDAAPEYEY 11 Unmodified _DTSDAAPEYEY_ 0 0 0 REV__nc|ENSG00000133424|O95461-2|LARGE1 REV__nc|ENSG00000133424|O95461-2|LARGE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7490234375 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 96.668 1 96.668 96.168 97.168 0 0 0 0 0.22595 1 18939 18939 11.495 0 1 + 8013 16166 4987 4991 8252 8252 -0.1363698455722897 DTSDDDDDP 9 Unmodified _DTSDDDDDP_ 0 0 0 nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF;SHPRH|p.L762Wfs*6|1|0.29|ENSG00000146414|chr6:145941828-145941828|A/-|frameshift_variant;SHPRH|p.Y564H|1|0.6|ENSG00000146414|chr6:145943691-145943691|A/G|missense_variant;nc|ENSG00000146414|Q149N8-2|SHPRH nc|ENSG00000146414|Q149N8-4|SHPRH nc|ENSG00000146414|Q149N8-4|SHPRH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.0010681152344 3 332.108841 993.304694 NaN NaN NaN NaN NaN NaN NaN 125.35 1 120.58 120.08 121.08 -4.7681 0 0 0 0.23508 1 24060 24060 4.897 3.2444 1 8014 4653 4988 4992 8253 8253 -0.19222654476277512 DTSGVARPPG 10 Unmodified _DTSGVARPPG_ 0 0 0 WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant;ENSG00000176473|ENST00000402312|WDR25 WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7436218261719 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 78.438 1 74.974 74.474 75.474 -3.4633 0 0 0 0.22535 1 15315 15315 20.454 11.071 1 8015 6471 4989 4993 8254 8254 -0.007208776303286868 DTSHGRGRVLY 11 Unmodified _DTSHGRGRVLY_ 0 0 0 nc|ENSG00000087303|Q14112-2|NID2;NID2|p.K1297Nfs*26|1|0.42|ENSG00000087303|chr14:52006650-52006650|T/-|frameshift_variant;ENSG00000087303|ENST00000216286|NID2 nc|ENSG00000087303|Q14112-2|NID2 nc|ENSG00000087303|Q14112-2|NID2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7492065429688 2 630.825818 1259.63708 NaN NaN NaN NaN NaN NaN NaN 108.03 1 103.62 103.12 104.12 -4.4121 0 0 0 0.22862 1 20727 20727 9.3831 3.1773 1 8016 1717 4990 4994 8255 8255 0.017649345094923774 DTSKFKET 8 Unmodified _DTSKFKET_ 0 0 0 tr|U7STI5|U7STI5_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01497PE=4SV=1 tr|U7STI5|U7STI5_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01497PE=4SV=1 tr|U7STI5|U7STI5_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01497PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7422180175781 2 478.24019 954.465826 -0.01633 -7.8099E-06 0.6064 0.00029001 0.59007 0.0002822 478.2401993409187 26.924 0.78458 26.924 26.635 27.419 0 57 22 5 0 0 0 0.7147 1 4689 4689 15.847 2.3393 1 6975500 8017 26152 4991 4995 8256 8256 -0.013228155817046172 DTSLSTAAAAW 11 Unmodified _DTSLSTAAAAW_ 0 0 0 REV__ENST00000601169.1_1_19:47539221-47543970:+|nuORF REV__ENST00000601169.1_1_19:47539221-47543970:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7764282226562 2 547.261653 1092.50875 -0.069623 -3.8102E-05 0.65404 0.00035793 0.58441 0.00031983 547.2618776043912 22.745 0.28614 21.292 21.154 21.44 -1.4535 12 7 2 0 0 0 0.87468 1 3634 3634 15.248 1.6336 1 540070 + 8018 23418 4992 4996 8257 8257 -0.03380045524295383 DTSNRQEL 8 Unmodified _DTSNRQEL_ 0 0 0 ENST00000509500.1_1_4:190962567-190962723:+|nuORF ENST00000509500.1_1_4:190962567-190962723:+|nuORF ENST00000509500.1_1_4:190962567-190962723:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7710266113281 2 481.73052 961.446488 NaN NaN NaN NaN NaN NaN NaN 74.231 1 70.637 70.137 71.137 -3.594 0 0 0 0.17344 1 14097 14097 34.102 9.4286 1 8019 10733 4993 4997 8258 8258 -0.03577771872619451 DTSRHCLP 8 Unmodified _DTSRHCLP_ 0 0 0 ENSG00000087206|ENST00000511320|UIMC1;nc|ENSG00000087206|Q96RL1-3|UIMC1 ENSG00000087206|ENST00000511320|UIMC1 ENSG00000087206|ENST00000511320|UIMC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25 2 464.718901 927.42325 -0.19205 -8.925E-05 1.1989 0.00055713 1.0068 0.00046788 464.71921693467516 68.441 0.50078 68.441 68.217 68.718 0 18 13 2 0 0 0 0.89479 1 13195 13195 0.25148 0.18749 1 1466700 8020 1708 4994 4998 8259 8259 -0.0433648919092775 DTSRPLGDSMY 11 Unmodified _DTSRPLGDSMY_ 0 0 0 ENSG00000188554|ENST00000590996|NBR1;nc|ENSG00000188554|Q14596-2|NBR1 ENSG00000188554|ENST00000590996|NBR1 ENSG00000188554|ENST00000590996|NBR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7801513671875 2 621.276977 1240.5394 0.35758 0.00022216 -0.28198 -0.00017519 0.075606 4.6972E-05 621.2769572120502 75.777 0.82895 72.054 71.652 72.481 -3.7227 56 23 4 0 0 0 0.46434 2 14341 14341;14356 24.991 10.153 1 9518500 8021 7176 4995 4999 8260;8261 8260 -0.07124635201535057 DTSRPLGDSMY 11 Unmodified _DTSRPLGDSMY_ 0 0 0 ENSG00000188554|ENST00000590996|NBR1;nc|ENSG00000188554|Q14596-2|NBR1 ENSG00000188554|ENST00000590996|NBR1 ENSG00000188554|ENST00000590996|NBR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7813720703125 2 621.276977 1240.5394 0.43109 0.00026783 -0.079065 -4.9122E-05 0.35202 0.0002187 621.2769088182179 75.674 0.66096 72.04 71.714 72.375 -3.6337 48 18 4 0 0 0 0.44408 1 14377 14377 26.021 16.477 1 10389000 8022 7176 4995 4999 8262 8262 -0.07124635201535057 DTSRPLGDSMY 11 Unmodified _DTSRPLGDSMY_ 0 0 0 ENSG00000188554|ENST00000590996|NBR1;nc|ENSG00000188554|Q14596-2|NBR1 ENSG00000188554|ENST00000590996|NBR1 ENSG00000188554|ENST00000590996|NBR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 621.276977 1240.5394 0.29967 0.00018618 0.29457 0.00018301 0.59424 0.00036919 621.2771005426715 71.737 0.60556 71.737 71.382 71.988 0 -0.23634 0.00057481 NaN 26.021 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 7280200 8023 7176 4995 4999 -0.07124635201535057 DTSRPLGDSMY 11 Unmodified _DTSRPLGDSMY_ 0 0 0 ENSG00000188554|ENST00000590996|NBR1;nc|ENSG00000188554|Q14596-2|NBR1 ENSG00000188554|ENST00000590996|NBR1 ENSG00000188554|ENST00000590996|NBR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 621.276977 1240.5394 0.9175 0.00057002 -0.52006 -0.0003231 0.39744 0.00024692 621.2766605386707 75.477 0.7562 72.062 71.682 72.439 -3.4151 0.088467 -0.00043741 NaN 26.021 53 21 4 NaN NaN NaN NaN 0 NaN NaN 0 11308000 8024 7176 4995 4999 -0.07124635201535057 DTSRSDLMY 9 Unmodified _DTSRSDLMY_ 0 0 0 REV__KLHDC2|p.F310Rfs*26|1|0.05|ENSG00000165516|chr14:49780745-49780746|-/GAGAGTAT|frameshift_variant REV__KLHDC2|p.F310Rfs*26|1|0.05|ENSG00000165516|chr14:49780745-49780746|-/GAGAGTAT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.79638671875 2 544.239864 1086.46517 0.18552 0.00010097 -3.0478 -0.0016588 -2.8623 -0.0015578 544.2390715709072 59.736 0.14407 56.802 56.676 56.82 -2.9333 5 3 2 0 0 0 0.77732 1 11484 11484 12.532 1.7076 1 374700 + 8025 23721 4996 5000 8263 8263 -0.07459978293081804 DTSSGGPARAY 11 Unmodified _DTSSGGPARAY_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2691040039062 2 541.249077 1080.4836 0.22119 0.00011972 0.46341 0.00025082 0.6846 0.00037054 541.2492022215841 35.451 0.37825 33.198 33.055 33.433 -2.2527 19 10 2 0 0 0 0.51025 2 6226 6218;6226 22.658 1.1211 1 1871600 8026 1291 4997 5001 8264;8265 8265 -0.0534210032685678 DTSSPLSAAG 10 Unmodified _DTSSPLSAAG_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7547302246094 2 453.214172 904.413791 -0.51716 -0.00023439 0.39704 0.00017994 -0.12013 -5.4444E-05 453.2144034583701 36.769 0.97293 34.3 33.869 34.841 -2.4688 67 27 3 0 0 0 0.61964 1 6754 6754 18.146 2.2992 1 2480800 8027 7260 4998 5002 8266 8266 -0.042239789954578555 DTSSWEWGD 9 Unmodified _DTSSWEWGD_ 0 0 0 REV__nc|ENSG00000143954|Q6UW15-2|REG3G REV__nc|ENSG00000143954|Q6UW15-2|REG3G MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2630615234375 2 541.706711 1081.39887 NaN NaN NaN NaN NaN NaN NaN 66.672 1 63.563 63.063 64.063 -3.1086 0 0 0 0.22251 1 12925 12925 16.942 3.0362 1 + 8028 16760 4999 5003 8267 8267 -0.13857470863467825 DTSTGGCQGSY 11 Unmodified _DTSTGGCQGSY_ 0 0 0 ENSG00000118160|ENST00000236877|SLC8A2;SLC8A2|p.S220Pfs*12|6|0.28|ENSG00000118160|chr19:47465746-47465746|A/-|frameshift_variant;SLC8A2|p.A229Gfs*3|1|0.16|ENSG00000118160|chr19:47457584-47457584|G/-|frameshift_variant ENSG00000118160|ENST00000236877|SLC8A2 ENSG00000118160|ENST00000236877|SLC8A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 538.1349487304688 2 538.203478 1074.3924 -0.072754 -3.9156E-05 0.96876 0.00052139 0.89601 0.00048223 538.2039783040871 25.319 0.41577 23.466 23.223 23.638 -1.8534 20 11 3 0 0 0 0.96102 1 4136 4136 1.1933 0 1 925030 8029 3018 5000 5004 8268 8268 -0.1418173208646749 DTSTIEELDE 10 Unmodified _DTSTIEELDE_ 0 0 0 REV__ENSG00000266826|ENST00000583666|IGBP1C REV__ENSG00000266826|ENST00000583666|IGBP1C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.31298828125 2 576.251148 1150.48774 NaN NaN NaN NaN NaN NaN NaN 32.424 1 30.276 29.776 30.776 -2.1483 0 0 0 0.22588 1 5617 5617 10.824 0 1 + 8030 19904 5001 5005 8269 8269 -0.08148100414473447 DTTIRSDGP 9 Unmodified _DTTIRSDGP_ 0 0 0 PDZD7|p.A396T|1|0.17|ENSG00000186862|chr10:101018960-101018960|C/T|missense_variant PDZD7|p.A396T|1|0.17|ENSG00000186862|chr10:101018960-101018960|C/T|missense_variant PDZD7|p.A396T|1|0.17|ENSG00000186862|chr10:101018960-101018960|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23272705078125 2 481.232896 960.451239 0.12747 6.1343E-05 -0.012197 -5.8698E-06 0.11527 5.5473E-05 481.2331582178105 38.155 0.79995 35.75 35.569 36.369 -2.4049 36 22 2 0 0 0 0.58804 1 6874 6874 13.906 1.6654 1 1740400 8031 12770 5002 5006 8270 8270 -0.030568877298492225 DTTIRSDGP 9 Unmodified _DTTIRSDGP_ 0 0 0 PDZD7|p.A396T|1|0.17|ENSG00000186862|chr10:101018960-101018960|C/T|missense_variant PDZD7|p.A396T|1|0.17|ENSG00000186862|chr10:101018960-101018960|C/T|missense_variant PDZD7|p.A396T|1|0.17|ENSG00000186862|chr10:101018960-101018960|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.233154296875 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 22.37 1 20.581 20.081 21.081 -1.7886 0 0 0 0.23508 1 3548 3548 10.824 0 1 8032 12770 5002 5006 8271 8271 -0.030568877298492225 DTTKGSIKI 9 Unmodified _DTTKGSIKI_ 0 0 0 tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1 tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1 tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77789306640625 2 481.779482 961.544411 NaN NaN NaN NaN NaN NaN NaN 60.891 1 57.958 57.458 58.458 -2.9333 0 0 0 0.18489 1 11726 11726 1.6919 0.8167 1 8033 26201 5003 5007 8272 8272 0.06210036723382473 DTTPVSALQY 10 Unmodified _DTTPVSALQY_ 0 0 0 IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant;ENSG00000112706|ENST00000369950|IMPG1 IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7929077148438 2 547.771854 1093.52915 0.73342 0.00040175 -0.69117 -0.0003786 0.042258 2.3148E-05 547.7716563947563 80.198 0.27823 80.198 80.002 80.28 0 14 7 2 0 0 0 0.13946 2 15607 15598;15607 49.933 2.1843 1 1141700 8034 2707 5004 5008 8273;8274 8274 -0.01386874864465426 DTTPVSALQY 10 Unmodified _DTTPVSALQY_ 0 0 0 IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant;ENSG00000112706|ENST00000369950|IMPG1 IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7720336914062 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 83.968 1 80.36 79.86 80.86 -3.6079 0 0 0 0.20365 1 16414 16414 27.629 7.1752 1 8035 2707 5004 5008 8275 8275 -0.01386874864465426 DTVAGASDLI 10 Unmodified _DTVAGASDLI_ 0 0 0 nc|ENSG00000044090|Q14999-2|CUL7 nc|ENSG00000044090|Q14999-2|CUL7 nc|ENSG00000044090|Q14999-2|CUL7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2534484863281 2 481.245472 960.476391 0.19881 9.5676E-05 -0.36213 -0.00017427 -0.16332 -7.8598E-05 481.2452666262255 99.809 1.515 95.819 95.377 96.892 -3.9895 145 43 5 0 0 0 0.59928 1 19383 19383 19.257 0 1 182930000 8036 12212 5005 5009 8276 8276 -0.005428329272717747 DTVAPGENL 9 Unmodified _DTVAPGENL_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.237548828125 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 82.351 1 78.652 78.152 79.152 -3.6985 0 0 0 0.12288 1 15703 15703 34.102 10.954 1 8037 2183 5006 5010 8277 8277 -0.026113886158100286 DTVCRTSQR 9 Unmodified _DTVCRTSQR_ 0 0 0 ENST00000490021.2_1_1:110230443-110251195:+|nuORF ENST00000490021.2_1_1:110230443-110251195:+|nuORF ENST00000490021.2_1_1:110230443-110251195:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26123046875 2 533.258922 1064.50329 NaN NaN NaN NaN NaN NaN NaN 28.356 1 26.601 26.101 27.101 -1.7552 0 0 0 0.23508 1 4782 4782 10.074 2.1638 1 8038 10508 5007 5011 8278 8278 -0.02638047587743131 DTVDKHNK 8 Unmodified _DTVDKHNK_ 0 0 0 REV__ENSG00000174405|ENST00000442234|LIG4 REV__ENSG00000174405|ENST00000442234|LIG4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7414245605469 2 478.743431 955.472308 -0.071111 -3.4044E-05 -0.38611 -0.00018485 -0.45722 -0.00021889 478.74287986200557 21.563 0.30488 21.563 21.33 21.635 0 11 8 2 0 0 0 0.69031 1 3583 3583 15.847 1.0089 1 270390 + 8039 18411 5008 5012 8279 8279 -0.007208776303286868 DTVEEKQL 8 Unmodified _DTVEEKQL_ 0 0 0 REV__nc|ENSG00000160401|Q5JU67-2|CFAP157 REV__nc|ENSG00000160401|Q5JU67-2|CFAP157 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24273681640625 2 481.245472 960.476391 0.10602 5.102E-05 -0.47546 -0.00022881 -0.36944 -0.00017779 481.24457546735755 61.033 0.38508 57.799 57.689 58.074 -3.2347 17 10 3 0 0 0 0.58432 1 11422 11422 23.148 2.6948 1 668460 + 8040 17420 5009 5013 8280 8280 -0.005428329272717747 DTVEKIAW 8 Unmodified _DTVEKIAW_ 0 0 0 nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS;ENST00000488307.5_1_9:130565203-130570042:+|nuORF nc|ENSG00000136877|Q05932-3|FPGS nc|ENSG00000136877|Q05932-3|FPGS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2536315917969 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 70.932 1 67.683 67.183 68.183 -3.2492 0 0 0 0.21486 1 13809 13809 12.532 2.3482 1 8041 4048 5010 5014 8281 8281 0.009820786605587273 DTVKKIESF 9 Unmodified _DTVKKIESF_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2682495117188 2 533.792589 1065.57063 0.1635 8.7276E-05 0.16698 8.9131E-05 0.33048 0.00017641 533.7926876582166 40.168 0.70455 37.679 37.405 38.109 -2.4896 23 17 2 0 0 0 0.52242 1 7163 7163 22.736 0 1 2947900 8042 4961 5011 5015 8282 8282 0.04046305894848956 DTVLRIEHVP 10 Unmodified _DTVLRIEHVP_ 0 0 0 ATG2B|p.V745Lfs*6|1|0.47|ENSG00000066739|chr14:96325854-96325854|T/-|frameshift_variant;ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant;ATG2B|p.F1495Lfs*16|1|0.09|ENSG00000066739|chr14:96306735-96306735|A/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B ATG2B|p.V745Lfs*6|1|0.47|ENSG00000066739|chr14:96325854-96325854|T/-|frameshift_variant ATG2B|p.V745Lfs*6|1|0.47|ENSG00000066739|chr14:96325854-96325854|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2532348632812 2 589.830037 1177.64552 0.45588 0.00026889 -1.6974 -0.0010012 -1.2415 -0.0007323 590.3289374953363 78.301 0.11228 74.838 74.782 74.894 -3.4633 4 2 2 0 0 0 0.85223 1 15290 15290 13.042 0.80181 1 868180 8043 251 5012 5016 8283 8283 0.0638048842608896 DTVNSFVTP 9 Unmodified _DTVNSFVTP_ 0 0 0 REV__nc|ENSG00000128918|O94788-4|ALDH1A2 REV__nc|ENSG00000128918|O94788-4|ALDH1A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2763366699219 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 118.44 1 118.44 117.94 118.94 0 0 0 0 0.22962 1 23331 23331 14.838 0 1 + 8044 15940 5013 5017 8284 8284 -0.024268155817139814 DTVNVDHY 8 Unmodified _DTVNVDHY_ 0 0 0 REV__ENST00000527144.5_1_8:145138126-145139470:+|nuORF REV__ENST00000527144.5_1_8:145138126-145139470:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25146484375 2 481.714339 961.414125 -0.05775 -2.7819E-05 -0.12252 -5.9017E-05 -0.18027 -8.6836E-05 481.7142615633815 34.067 0.41812 31.749 31.596 32.015 -2.3175 19 11 2 0 0 0 0.64227 1 6298 6298 19.439 1.304 1 1721800 + 8045 22698 5014 5018 8285 8285 -0.06812559275613239 DTVPNNTVP 9 Unmodified _DTVPNNTVP_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7366638183594 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 93.574 1 89.583 89.083 90.083 -3.9907 0 0 0 0.22962 1 18330 18330 14.838 0.25658 1 8046 7947 5015 5019 8286 8286 -0.018436997244634767 DTVQVVRY 8 Unmodified _DTVQVVRY_ 0 0 0 REV__nc|ENSG00000105698|Q15853-2|USF2 REV__nc|ENSG00000105698|Q15853-2|USF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2731018066406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 55.962 1 52.772 52.272 53.272 -3.1895 0 0 0 0.21486 1 10358 10358 9.3474 0 1 + 8047 15011 5016 5020 8287 8287 0.02332883409144415 DTVQVVRY 8 Unmodified _DTVQVVRY_ 0 0 0 REV__nc|ENSG00000105698|Q15853-2|USF2 REV__nc|ENSG00000105698|Q15853-2|USF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2652893066406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 56.05 1 52.874 52.374 53.374 -3.1761 0 0 0 0.21486 1 10419 10419 8.5933 0 1 + 8048 15011 5016 5020 8288 8288 0.02332883409144415 DTVQVVRY 8 Unmodified _DTVQVVRY_ 0 0 0 REV__nc|ENSG00000105698|Q15853-2|USF2 REV__nc|ENSG00000105698|Q15853-2|USF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2637634277344 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 70.926 1 67.459 66.959 67.959 -3.467 0 0 0 0.20896 1 13437 13437 18.135 2.3668 1 + 8049 15011 5016 5020 8289 8289 0.02332883409144415 DTVRCRWFRVK 11 Unmodified _DTVRCRWFRVK_ 0 0 0 REV__nc|ENSG00000172869|Q9Y485|DMXL1 REV__nc|ENSG00000172869|Q9Y485|DMXL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.22869873046875 3 489.26635 1464.77722 NaN NaN NaN NaN NaN NaN NaN 76.52 1 72.797 72.297 73.297 -3.7227 0 0 0 0.22632 1 14491 14491 1.4551 0 1 + 8050 13701 5017 5021 8290 8290 0.06342395242154453 DTVRGPRR 8 Unmodified _DTVRGPRR_ 0 0 0 ENST00000322893.11_1_14:63483627-63512140:-|nuORF ENST00000322893.11_1_14:63483627-63512140:-|nuORF ENST00000322893.11_1_14:63483627-63512140:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7369384765625 2 478.772857 955.531161 0.12183 5.833E-05 1.4313 0.00068528 1.5532 0.00074361 478.7739747431416 59.591 0.2107 56.367 56.253 56.464 -3.2237 7 5 2 0 0 0 8448 1 11111 11111 0.25148 0.18749 1 404970 8051 8723 5018 5022 8291 8291 0.051616434546644996 DTVRGRLY 8 Unmodified _DTVRGRLY_ 0 0 0 nc|ENSG00000158458|O14511-6|NRG2;nc|ENSG00000158458|O14511-5|NRG2;nc|ENSG00000158458|O14511-7|NRG2;nc|ENSG00000158458|O14511-8|NRG2;nc|ENSG00000158458|O14511-2|NRG2;ENSG00000158458|ENST00000361474|NRG2;nc|ENSG00000158458|O14511-4|NRG2;nc|ENSG00000158458|O14511-3|NRG2 nc|ENSG00000158458|O14511-6|NRG2 nc|ENSG00000158458|O14511-6|NRG2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27099609375 2 490.269616 978.524678 NaN NaN NaN NaN NaN NaN NaN 56.248 1 53.059 52.559 53.559 -3.1895 0 0 0 0.21486 1 10420 10420 8.5933 0.68312 1 8052 5166 5019 5023 8292 8292 0.03455705503290574 DTVSIISNI 9 Unmodified _DTVSIISNI_ 0 0 0 ENSG00000174948|ENST00000389740|GPR149 ENSG00000174948|ENST00000389740|GPR149 ENSG00000174948|ENST00000389740|GPR149 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78021240234375 2 481.263665 960.512776 -0.0090808 -4.3702E-06 0.070022 3.3699E-05 0.060941 2.9329E-05 481.2635604250816 91.113 0.68057 87.253 86.929 87.61 -3.8595 40 19 3 0 0 0 0.25702 1 17887 17887 34.102 3.4659 1 3245800 8053 6377 5020 5024 8293 8293 0.030940439694290944 DTVSIISNI 9 Unmodified _DTVSIISNI_ 0 0 0 ENSG00000174948|ENST00000389740|GPR149 ENSG00000174948|ENST00000389740|GPR149 ENSG00000174948|ENST00000389740|GPR149 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7654724121094 2 481.263665 960.512776 0.072237 3.4765E-05 -0.084747 -4.0786E-05 -0.01251 -6.0204E-06 481.26350847832384 91.127 0.82681 87.319 86.892 87.719 -3.8083 38 23 2 0 0 0 0.081765 1 17473 17473 61.357 0 1 2524800 8054 6377 5020 5024 8294 8294 0.030940439694290944 DTVTSYNY 8 Unmodified _DTVTSYNY_ 0 0 0 ENSG00000101901|ENST00000394780|ALG13;nc|ENSG00000101901|Q9NP73-3|ALG13;nc|ENSG00000101901|Q9NP73-4|ALG13 ENSG00000101901|ENST00000394780|ALG13 ENSG00000101901|ENST00000394780|ALG13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7862854003906 2 481.708722 961.402892 NaN NaN NaN NaN NaN NaN NaN 48.396 1 45.527 45.027 46.027 -2.869 0 0 0 0.21452 1 9155 9155 13.508 0 1 8055 2095 5021 5025 8295 8295 -0.07935381369759398 DTVWLAGGP 9 Unmodified _DTVWLAGGP_ 0 0 0 ENST00000588396.1_1_18:59557720-59560115:-|nuORF ENST00000588396.1_1_18:59557720-59560115:-|nuORF ENST00000588396.1_1_18:59557720-59560115:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2295227050781 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 19.923 1 18.287 17.787 18.787 -1.6351 0 0 0 0.21848 1 3036 3036 18.135 1.0221 1 8056 11572 5022 5026 8296 8296 -0.010864770279567892 DTWATRSKE 9 Unmodified _DTWATRSKE_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9|HEATR5A REV__nc|ENSG00000129493|Q86XA9|HEATR5A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7696533203125 2 547.26727 1092.51999 0.68326 0.00037393 -0.094287 -5.16E-05 0.58897 0.00032233 547.2671299893702 21.559 0.35478 20.085 19.912 20.266 -1.4742 22 9 3 0 0 0 0.48644 1 3634 3634 20.454 1.0917 1 1951700 + 8057 15965 5023 5027 8297 8297 -0.022572234301378558 DTWKDLFPG 9 Unmodified _DTWKDLFPG_ 0 0 0 PIGO|p.P614Hfs*9|1|0.41|ENSG00000165282|chr9:35092046-35092046|G/-|frameshift_variant;nc|ENSG00000165282|Q8TEQ8-2|PIGO;PIGO|p.R731Vfs*17|3|0.41|ENSG00000165282|chr9:35091696-35091696|G/-|frameshift_variant;ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF PIGO|p.P614Hfs*9|1|0.41|ENSG00000165282|chr9:35092046-35092046|G/-|frameshift_variant PIGO|p.P614Hfs*9|1|0.41|ENSG00000165282|chr9:35092046-35092046|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017822265625 3 360.178313 1077.51311 NaN NaN NaN NaN NaN NaN NaN 40.604 1 40.604 40.104 41.104 0 0 0 0 0.23508 1 7554 7554 7.609 0.50723 1 8058 5616 5024 5028 8298 8298 -0.022545363107155936 DTWLVKWF 8 Unmodified _DTWLVKWF_ 0 0 0 REV__FIGN|p.K70Nfs*29|2|0.24|ENSG00000182263|chr2:163611622-163611622|T/-|frameshift_variant REV__FIGN|p.K70Nfs*29|2|0.24|ENSG00000182263|chr2:163611622-163611622|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7717895507812 2 547.78711 1093.55967 NaN NaN NaN NaN NaN NaN NaN 124.65 1 120.05 119.55 120.55 -4.5984 0 0 0 0.2074 1 24582 24582 19.439 5.9311 1 + 8059 23537 5025 5029 8299 8299 0.016629483112183152 DTWSQPEV 8 Unmodified _DTWSQPEV_ 0 0 0 CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant;CFAP46|p.E683Kfs*3|1|0.38|ENSG00000171811|chr10:132916623-132916623|G/-|frameshift_variant;CFAP46|p.L933Wfs*7|1|0.45|ENSG00000171811|chr10:132908595-132908595|G/-|frameshift_variant;CFAP46|p.V1485Cfs*2|1|0.35|ENSG00000171811|chr10:132872734-132872734|C/-|frameshift_variant;ENSG00000171811|ENST00000368586|CFAP46 CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant;ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2525939941406 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 48.944 1 45.937 45.437 46.437 -3.0068 0 0 0 0.2074 1 8967 8967 19.439 5.9311 1 8060 6174;500 5026 5030 8300 8300 -0.06291675132843011 DTWSSGSYQG 10 Unmodified _DTWSSGSYQG_ 0 0 0 REV__ENST00000382564.6_1_3:180704790-180707418:-|nuORF REV__ENST00000382564.6_1_3:180704790-180707418:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7828369140625 2 544.219985 1086.42542 0.69813 0.00037993 -0.70165 -0.00038185 -0.0035175 -1.9143E-06 544.2194968649692 103.32 0.75341 103.32 102.93 103.69 0 46 21 3 0 0 0 0.84281 1 20284 20284 19.257 2.1441 1 6384600 + 8061 21180 5027 5031 8301 8301 -0.11433781972141333 DTWVVETL 8 Unmodified _DTWVVETL_ 0 0 0 ENSG00000183318|ENST00000689094|SPDYE4 ENSG00000183318|ENST00000689094|SPDYE4 ENSG00000183318|ENST00000689094|SPDYE4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7821044921875 2 481.745108 961.475663 NaN NaN NaN NaN NaN NaN NaN 36.131 1 36.131 35.631 36.631 0 0 0 0 0.16002 1 6654 6654 36.044 5.8194 1 8062 6842 5028 5032 8302 8302 -0.006616275763121848 DTYDCDEY 8 Unmodified _DTYDCDEY_ 0 0 0 ENSG00000197961|ENST00000320451|ZNF121 ENSG00000197961|ENST00000320451|ZNF121 ENSG00000197961|ENST00000320451|ZNF121 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.2056884765625 2 512.16603 1022.31751 NaN NaN NaN NaN NaN NaN NaN 138.29 1 138.29 137.79 138.79 0 0 0 0 0.23749 1 27452 27452 0.12286 0 1 8063 7416 5029 5033 8303 8303 -0.19275914617742274 DTYELYVDY 9 Unmodified _DTYELYVDY_ 0 0 0 REV__ENSG00000164953|ENST00000453321|TMEM67 REV__ENSG00000164953|ENST00000453321|TMEM67 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2547607421875 2 590.755869 1179.49719 0.56232 0.00033219 -0.34595 -0.00020437 0.21637 0.00012782 590.7564078760923 97.326 0.17453 93.091 92.982 93.156 -4.2348 6 4 2 0 0 0 0.65155 1 18599 18599 28.487 5.3384 1 851700 + 8064 17729 5030 5034 8304 8304 -0.08538287338274131 DTYEYTWY 8 Unmodified _DTYEYTWY_ 0 0 0 REV__ENSG00000198712|ENST00000361739|MT-CO2 REV__ENSG00000198712|ENST00000361739|MT-CO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2101745605469 3 380.822195 1139.44476 -0.56703 -0.00021594 0.73426 0.00027962 0.16723 6.3687E-05 380.82244283368885 110.7 0.79408 106.27 105.88 106.68 -4.4231 57 22 3 0 0 0 0.88974 1 21818 21818 0.12286 0.12286 1 8459700 + 8065 19437 5031 5035 8305 8305 -0.11938825681227172 DTYKPRSI 8 Unmodified _DTYKPRSI_ 0 0 0 REV__MROH8|p.F768Lfs*38|1|0.13|ENSG00000101353|chr20:37120510-37120510|A/-|frameshift_variant REV__MROH8|p.F768Lfs*38|1|0.13|ENSG00000101353|chr20:37120510-37120510|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26617431640625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 52.044 1 52.044 51.544 52.544 0 0 0 0 0.21292 1 9885 9885 14.838 0.93222 1 + 8066 14783 5032 5036 8306 8306 0.023328834091330464 DTYLEQPG 8 Unmodified _DTYLEQPG_ 0 0 0 REV__nc|ENSG00000131242|Q86YS3-2|RAB11FIP4 REV__nc|ENSG00000131242|Q86YS3-2|RAB11FIP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.542724609375 2 461.711265 921.407977 NaN NaN NaN NaN NaN NaN NaN 37.795 1 35.326 34.826 35.826 -2.4688 0 0 0 0.21486 1 6989 6989 9.3474 0 1 + 8067 16063 5033 5037 8307 8307 -0.05587077507129834 DTYLSIHA 8 Unmodified _DTYLSIHA_ 0 0 0 REV__B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant REV__B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23004150390625 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 20.032 1 18.397 17.897 18.897 -1.6351 0 0 0 0.21486 1 3059 3059 9.3474 3.587 1 + 8068 13171 5034 5038 8308 8308 -0.017787808905723068 DTYQDYEEYWR 11 Unmodified _DTYQDYEEYWR_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6828002929688 3 523.216044 1566.6263 NaN NaN NaN NaN NaN NaN NaN 55.658 1 52.774 52.274 53.274 -2.8837 0 0 0 0.22632 1 10655 10655 0.50596 0.47975 1 8069 1342 5035 5039 8309 8309 -0.13434557446134932 DTYTCDIGQA 10 Unmodified _DTYTCDIGQA_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7700805664062 2 543.724046 1085.43354 0.34045 0.00018511 0.10493 5.7054E-05 0.44538 0.00024216 543.7240323789854 22.214 0.41488 22.214 22.017 22.432 0 24 11 3 0 0 0 0.4708 1 3759 3759 26.268 0.86883 1 1250400 8070 5009 5036 5040 8310 8310 -0.10575971047023813 DTYTCDIGQA 10 Unmodified _DTYTCDIGQA_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.724046 1085.43354 1.0906 0.00059297 -0.82118 -0.0004465 0.26939 0.00014647 543.723598400455 23.763 0.3102 22.21 22.081 22.392 -1.5532 -0.0016899 -0.00050065 NaN 26.268 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1341300 8071 5009 5036 5040 -0.10575971047023813 DTYTNEKS 8 Unmodified _DTYTNEKS_ 0 0 0 REV__RP1|p.P1648Lfs*62|1|0.32|ENSG00000104237|chr8:54628817-54628817|T/-|frameshift_variant REV__RP1|p.P1648Lfs*62|1|0.32|ENSG00000104237|chr8:54628817-54628817|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72283935546875 2 479.211629 956.408705 0.13943 6.6815E-05 0.98581 0.00047241 1.1252 0.00053923 479.211968133943 38.988 0.87139 36.583 36.266 37.137 -2.4049 49 24 3 0 0 0 0.97173 1 6963 6963 18.135 0 1 1942400 + 8072 14911 5037 5041 8311 8311 -0.07124282858080733 DVADVDKQA 9 Unmodified _DVADVDKQA_ 0 0 0 REV__ENSG00000160678|ENST00000292169|S100A1 REV__ENSG00000160678|ENST00000292169|S100A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23675537109375 2 480.735271 959.45599 -0.27105 -0.0001303 0.28301 0.00013605 0.011958 5.7485E-06 480.7354517081136 39.095 1.1616 36.546 35.873 37.035 -2.5491 51 32 2 0 0 0 0.48437 1 7286 7286 27.629 4.8925 1 2193200 + 8073 17426 5038 5042 8312 8312 -0.02536003587090363 DVADYHPG 8 Unmodified _DVADYHPG_ 0 0 0 ENST00000301021.7_1_16:88928009-88928081:+|nuORF ENST00000301021.7_1_16:88928009-88928081:+|nuORF ENST00000301021.7_1_16:88928009-88928081:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2173767089844 2 437.1905 872.366446 NaN NaN NaN NaN NaN NaN NaN 72.483 1 72.483 71.983 72.983 0 0 0 0 0.21486 1 14057 14057 5.7604 0 1 8074 8553 5039 5043 8313 8313 -0.07484213475800061 DVAEAIIGQAG 11 Unmodified _DVAEAIIGQAG_ 0 0 0 tr|U7SF29|U7SF29_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02374PE=4SV=1 tr|U7SF29|U7SF29_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02374PE=4SV=1 tr|U7SF29|U7SF29_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02374PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2717895507812 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 85.244 1 85.244 84.744 85.744 0 0 0 0 0.22632 1 16637 16637 0.11104 0.047054 1 8075 25884 5040 5044 8314 8314 0.009925448553985916 DVAFGEVS 8 Unmodified _DVAFGEVS_ 0 0 0 REV__ENSG00000141279|ENST00000322157|NPEPPS REV__ENSG00000141279|ENST00000322157|NPEPPS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.8672790527344 2 412.195251 822.375948 NaN NaN NaN NaN NaN NaN NaN 71.696 1 68.158 67.658 68.658 -3.5385 0 0 0 0.23664 1 13594 13594 3.2813 0 1 + 8076 16617 5041 5045 8315 8315 -0.042344451902749825 DVASSSKHV 9 Unmodified _DVASSSKHV_ 0 0 0 REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2393798828125 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 33.353 1 31.207 30.707 31.707 -2.1468 0 0 0 0.14843 1 5815 5815 30.637 5.2372 1 + 8077 17930 5042 5046 8316 8316 -0.005682800046088232 DVCLESKAP 9 Unmodified _DVCLESKAP_ 0 0 0 VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2457275390625 2 481.236593 960.458632 0.41311 0.00019881 -0.65599 -0.00031569 -0.24287 -0.00011688 481.23655509008177 89.716 1.1645 85.671 84.964 86.128 -4.0443 59 32 3 0 0 0 0.50943 1 17142 17142 0.12781 0 1 971570 8078 3741 5043 5047 8317 8317 -0.02317871453783482 DVCWHTGP 8 Unmodified _DVCWHTGP_ 0 0 0 nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3 nc|ENSG00000156218|P82987-2|ADAMTSL3 nc|ENSG00000156218|P82987-2|ADAMTSL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.234130859375 2 457.694895 913.375237 0.038173 1.7472E-05 0.77977 0.0003569 0.81794 0.00037437 457.6960338866179 41.578 1.0879 39.088 38.496 39.584 -2.4896 77 30 3 0 0 0 8448 1 7446 7446 1.7423 1.0609 1 1615000 8079 5080 5044 5048 8318 8318 -0.08491563110976585 DVDANKVI 8 Unmodified _DVDANKVI_ 0 0 0 ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant;ENST00000522846.1_1_8:29048390-29120551:-|nuORF ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2362976074219 2 437.23745 872.460347 -0.26222 -0.00011465 0.023389 1.0227E-05 -0.23883 -0.00010443 437.2373698961391 83.16 0.82335 79.462 79.076 79.899 -3.6985 34 23 2 0 0 0 0.69887 1 15812 15812 14.582 1.0738 1 1600300 8080 7410 5045 5049 8319 8319 0.019015056264720442 DVDEMNYEY 9 Unmodified _DVDEMNYEY_ 0 0 0 REV__tr|U7T5R8|U7T5R8_FUSNUMalonicsemialdehydereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00059PE=3SV=1 REV__tr|U7T5R8|U7T5R8_FUSNUMalonicsemialdehydereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00059PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.14208984375 3 393.149983 1176.42812 0.016106 6.3321E-06 0.38032 0.00014952 0.39643 0.00015586 393.48439068678 122.1 0.5352 117.55 117.35 117.88 -4.5476 23 14 2 0 0 0 0.48181 1 24065 24065 2.6312 0 1 1184500 + 8081 25421 5046 5050 8320 8320 -0.15303694629506026 DVDEVLNVY 9 Unmodified _DVDEVLNVY_ 0 0 0 REV__nc|ENSG00000151445|Q9H9C1-2|VIPAS39 REV__nc|ENSG00000151445|Q9H9C1-2|VIPAS39 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.274169921875 2 533.258579 1064.50261 0.67386 0.00035934 -0.19194 -0.00010235 0.48191 0.00025699 533.2588880926746 110.94 0.10249 106.71 106.62 106.73 -4.2289 4 2 2 0 0 0 0.66537 1 21340 21340 8.5933 0.68312 1 387110 + 8082 17066 5047 5051 8321 8321 -0.02706563755782554 DVDWGDVDY 9 Unmodified _DVDWGDVDY_ 0 0 0 NUBP1|p.E164D|1|0.28|ENSG00000103274|chr16:10757913-10757913|G/T|missense_variant NUBP1|p.E164D|1|0.28|ENSG00000103274|chr16:10757913-10757913|G/T|missense_variant NUBP1|p.E164D|1|0.28|ENSG00000103274|chr16:10757913-10757913|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.778564453125 2 542.216911 1082.41927 0.26039 0.00014119 1.7192 0.00093218 1.9796 0.0010734 542.2206111879012 79.47 0.78098 75.96 75.659 76.44 -3.5102 91 21 6 0 0 0 0.62102 1 15523 15523 11.64 0 1 8989100 8083 12716 5048 5052 8322 8322 -0.11864300203660605 DVDWGDVDY 9 Unmodified _DVDWGDVDY_ 0 0 0 NUBP1|p.E164D|1|0.28|ENSG00000103274|chr16:10757913-10757913|G/T|missense_variant NUBP1|p.E164D|1|0.28|ENSG00000103274|chr16:10757913-10757913|G/T|missense_variant NUBP1|p.E164D|1|0.28|ENSG00000103274|chr16:10757913-10757913|G/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.216911 1082.41927 0.52422 0.00028424 2.3362 0.0012667 2.8604 0.001551 542.2203628808728 75.743 0.65264 75.743 75.41 76.063 0 -0.16059 0.0002585 NaN 11.64 64 18 5 NaN NaN NaN NaN 0 NaN NaN 0 9868700 8084 12716 5048 5052 -0.11864300203660605 DVDWGDVDY 9 Unmodified _DVDWGDVDY_ 0 0 0 NUBP1|p.E164D|1|0.28|ENSG00000103274|chr16:10757913-10757913|G/T|missense_variant NUBP1|p.E164D|1|0.28|ENSG00000103274|chr16:10757913-10757913|G/T|missense_variant NUBP1|p.E164D|1|0.28|ENSG00000103274|chr16:10757913-10757913|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.216911 1082.41927 -0.03528 -1.9129E-05 2.4449 0.0013257 2.4096 0.0013065 542.2207373675149 79.797 0.81346 75.992 75.612 76.425 -3.8048 0.087869 0.00037636 NaN 11.64 106 22 7 NaN NaN NaN NaN 0 NaN NaN 0 16609000 8085 12716 5048 5052 -0.11864300203660605 DVDWGDVDY 9 Unmodified _DVDWGDVDY_ 0 0 0 NUBP1|p.E164D|1|0.28|ENSG00000103274|chr16:10757913-10757913|G/T|missense_variant NUBP1|p.E164D|1|0.28|ENSG00000103274|chr16:10757913-10757913|G/T|missense_variant NUBP1|p.E164D|1|0.28|ENSG00000103274|chr16:10757913-10757913|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.216911 1082.41927 -0.019284 -1.0456E-05 1.8592 0.0010081 1.8399 0.00099762 542.2205874131328 79.597 0.73315 75.921 75.654 76.387 -3.676 0.016688 -0.00025883 NaN 11.64 94 20 6 NaN NaN NaN NaN 0 NaN NaN 0 14221000 8086 12716 5048 5052 -0.11864300203660605 DVEYRLQR 8 Unmodified _DVEYRLQR_ 0 0 0 REV__ENSG00000174010|ENST00000328046|KLHL15 REV__ENSG00000174010|ENST00000328046|KLHL15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2086486816406 3 360.192845 1077.55671 -0.17761 -6.3974E-05 0.5205 0.00018748 0.34289 0.00012351 360.1930279597807 26.106 1.0329 26.106 25.669 26.702 0 100 29 5 0 0 0 8448 1 4637 4637 0.62683 0 1 72338000 + 8087 18386 5049 5053 8323 8323 0.021030731864129848 DVFKLLEQTKY 11 Unmodified _DVFKLLEQTKY_ 0 0 0 tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1 tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1 tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5334777832031 3 461.922132 1382.74457 0.004178 1.9299E-06 0.43975 0.00020313 0.44392 0.00020506 461.92208922145915 146.32 0.51868 141.63 141.4 141.92 -4.6868 26 14 3 0 0 0 0.65515 1 29058 29058 3.0723 0 1 2492100 8088 26252 5050 5054 8324 8324 0.06850466600349137 DVFKLLEQTKY 11 Unmodified _DVFKLLEQTKY_ 0 0 0 tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1 tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1 tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 461.922132 1382.74457 0.19454 8.986E-05 -0.39641 -0.00018311 -0.20187 -9.3248E-05 461.92198198632997 141.87 0.51892 141.87 141.64 142.16 0 0.13602 -0.00060147 NaN 3.0723 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3541900 8089 26252 5050 5054 0.06850466600349137 DVFKLLEQTKY 11 Unmodified _DVFKLLEQTKY_ 0 0 0 tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1 tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1 tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 461.922132 1382.74457 0.068657 3.1714E-05 -0.064103 -2.9611E-05 0.0045537 2.1035E-06 461.92199336496026 146.81 0.47984 141.7 141.45 141.93 -5.1108 -0.033668 -0.00014098 NaN 3.0723 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2056300 8090 26252 5050 5054 0.06850466600349137 DVFKLSDR 8 Unmodified _DVFKLSDR_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2643127441406 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 8448 1 11271 11271 0.62683 0 1 39769000 8091 2813 5051 5055 8325 8325 0.02332883409144415 DVFLFPQL 8 Unmodified _DVFLFPQL_ 0 0 0 REV__OR12D2|p.V28D|1|0.63|ENSG00000280236|chr6:29396782-29396782|T/A|missense_variant REV__OR12D2|p.V28D|1|0.63|ENSG00000280236|chr6:29396782-29396782|T/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2707824707031 2 489.768386 977.522219 0.12473 6.1087E-05 -0.87045 -0.00042632 -0.74572 -0.00036523 489.7680628059442 106.59 0.40939 102.21 101.96 102.37 -4.3764 16 11 2 0 0 0 8448 1 20427 20427 6.1918 4.4496 1 1521600 + 8092 24401 5052 5056 8326 8326 0.032558570455989866 DVGGNDQRLL 10 Unmodified _DVGGNDQRLL_ 0 0 0 REV__LHX9|p.E330D|1|0.09|ENSG00000143355|chr1:197929055-197929055|G/T|missense_variant REV__LHX9|p.E330D|1|0.09|ENSG00000143355|chr1:197929055-197929055|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7815551757812 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 132.29 1 127.65 127.15 128.15 -4.6399 0 0 0 2.8426 1 26077 26077 3.5927 1.6652 1 + 8093 23795 5053 5057 8327 8327 0.00718465461204687 DVGLWLLF 8 Unmodified _DVGLWLLF_ 0 0 0 nc|ENSG00000177595|Q9HB75-4|PIDD1;ENST00000524486.5_1_11:799309-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1;nc|ENSG00000177595|Q9HB75-7|PIDD1;ENST00000527357.5_1_11:801679-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-5|PIDD1;ENST00000534525.5_1_11:799959-803120:-|nuORF nc|ENSG00000177595|Q9HB75-4|PIDD1 nc|ENSG00000177595|Q9HB75-4|PIDD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7718200683594 2 481.770929 961.527304 NaN NaN NaN NaN NaN NaN NaN 153.16 1 147.94 147.44 148.44 -5.2209 0 0 0 0.21486 1 29684 29684 10.183 0 1 8094 6522 5054 5058 8328 8328 0.045001609082419236 DVGSSVVMY 9 Unmodified _DVGSSVVMY_ 0 0 0 REV__ENST00000445714.1_1_10:27638689-27639127:-|nuORF REV__ENST00000445714.1_1_10:27638689-27639127:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7247314453125 2 478.723318 955.432083 -0.016123 -7.7184E-06 0.9467 0.00045321 0.93058 0.00044549 478.7237034430472 84.068 2.6812 80.46 79.266 81.948 -3.6079 138 76 2 0 0 0 0.60805 1 16665 16665 12.532 0 1 3096100 + 8095 15749 5055 5059 8329 8329 -0.04741560345109974 DVHVLNPY 8 Unmodified _DVHVLNPY_ 0 0 0 REV__ENSG00000047188|ENST00000161863|YTHDC2 REV__ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72332763671875 2 478.745442 955.476331 -0.20813 -9.964E-05 0.4613 0.00022085 0.25318 0.00012121 478.7456310554386 40.696 0.98144 38.061 37.798 38.78 -2.6348 53 27 3 0 0 0 0.64227 1 7662 7662 19.439 3.5918 1 14395000 + 8096 14058 5056 5060 8330 8330 -0.003187881366329748 DVIKWVRY 8 Unmodified _DVIKWVRY_ 0 0 0 ENST00000461733.5_1_3:183898306-183901401:+|nuORF;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1 ENST00000461733.5_1_3:183898306-183901401:+|nuORF ENST00000461733.5_1_3:183898306-183901401:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2075500488281 3 360.206315 1077.59712 NaN NaN NaN NaN NaN NaN NaN 48.663 1 45.794 45.294 46.294 -2.869 0 0 0 0.23584 1 9207 9207 0.12286 0.049601 1 8097 5285 5057 5061 8331 8331 0.06142039576843672 DVIQVIYPP 9 Unmodified _DVIQVIYPP_ 0 0 0 REV__ENSG00000173124|ENST00000394005|ACSM6 REV__ENSG00000173124|ENST00000394005|ACSM6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2822875976562 2 522.292225 1042.5699 NaN NaN NaN NaN NaN NaN NaN 119.11 1 114.47 113.97 114.97 -4.645 0 0 0 0.23508 1 22856 22856 6.7232 0.96273 1 + 8098 18328 5058 5062 8332 8332 0.05031511245783804 DVIRNKYE 8 Unmodified _DVIRNKYE_ 0 0 0 ENST00000525127.1_1_11:66108392-66109705:-|nuORF;ENST00000534617.5_1_11:66108392-66109705:-|nuORF;ENSG00000174744|ENST00000359957|BRMS1;ENST00000530238.5_1_11:66105966-66109705:-|nuORF ENST00000525127.1_1_11:66108392-66109705:-|nuORF ENST00000525127.1_1_11:66108392-66109705:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.8919372558594 3 346.185579 1035.53491 -0.31104 -0.00010768 0.62989 0.00021806 0.31885 0.00011038 346.18568152735054 23.229 0.41866 23.229 23.096 23.514 0 18 11 3 0 0 0 1.0278 1 3959 3959 0.35063 0.2427 1 638870 8099 6367 5059 5063 8333 8333 0.018562684378593985 DVIRNKYE 8 Unmodified _DVIRNKYE_ 0 0 0 ENST00000525127.1_1_11:66108392-66109705:-|nuORF;ENST00000534617.5_1_11:66108392-66109705:-|nuORF;ENSG00000174744|ENST00000359957|BRMS1;ENST00000530238.5_1_11:66105966-66109705:-|nuORF ENST00000525127.1_1_11:66108392-66109705:-|nuORF ENST00000525127.1_1_11:66108392-66109705:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 346.185579 1035.53491 -0.86533 -0.00029957 0.72737 0.00025181 -0.13796 -4.7758E-05 346.1857421091801 25.092 0.31377 23.239 23.05 23.364 -1.8534 0.0052099 4.6798E-05 NaN 0.35063 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 598500 8100 6367 5059 5063 0.018562684378593985 DVKFHASH 8 Unmodified _DVKFHASH_ 0 0 0 REV__nc|ENSG00000131471|Q16853-2|AOC3 REV__nc|ENSG00000131471|Q16853-2|AOC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.1598815917969 3 314.159365 939.456264 NaN NaN NaN NaN NaN NaN NaN 63.077 1 60.079 59.579 60.579 -2.9975 0 0 0 0.21486 1 12179 12179 3.5965 0.31518 1 + 8101 13070 5060 5064 8334 8334 -0.015885390765788543 DVKTVKAGPAT 11 Unmodified _DVKTVKAGPAT_ 0 0 0 REV__tr|U7T624|U7T624_FUSNUPeptidaseM15Cdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00073PE=4SV=1 REV__tr|U7T624|U7T624_FUSNUPeptidaseM15Cdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00073PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7766723632812 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 166.42 1 161.63 161.13 162.13 -4.7898 0 0 0 0.17063 1 33429 33429 24.991 7.8781 1 + 8102 25435 5061 5065 8335 8335 0.06869397160448898 DVLAWLPD 8 Unmodified _DVLAWLPD_ 0 0 0 REV__ENSG00000107954|ENST00000369780|NEURL1 REV__ENSG00000107954|ENST00000369780|NEURL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1645202636719 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 150.69 1 150.69 150.19 151.19 0 0 0 0 0.23881 1 30173 30173 0.25148 0.25148 1 + 8103 15102 5062 5066 8336 8336 0.003546936318457483 DVLIKPKW 8 Unmodified _DVLIKPKW_ 0 0 0 REV__tr|U7SHA6|U7SHA6_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02242PE=4SV=1 REV__tr|U7SHA6|U7SHA6_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02242PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.53985595703125 3 333.539294 997.596052 NaN NaN NaN NaN NaN NaN NaN 65.595 1 65.595 65.095 66.095 0 0 0 0 0.2343 1 12653 12653 1.7423 1.1154 1 + 8104 24884 5063 5067 8337 8337 0.09715825207933904 DVLLDGFER 9 Unmodified _DVLLDGFER_ 0 0 0 REV__GAB2|p.P512Lfs*19|1|0.36|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant REV__GAB2|p.P512Lfs*19|1|0.36|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2640991210938 2 532.274564 1062.53457 0.44364 0.00023614 1.2149 0.00064668 1.6586 0.00088282 532.2742443321255 57.248 0.69681 54.058 53.723 54.42 -3.1895 49 19 3 0 0 0 0.48644 1 10657 10657 20.454 0 1 3190000 + 8105 14023 5064 5068 8338 8338 0.00580848718004745 DVLNQLSQF 9 Unmodified _DVLNQLSQF_ 0 0 0 ENST00000510223.5_1_4:89394995-89425581:+|nuORF;ENST00000502913.1_1_4:89394186-89425581:+|nuORF;ENSG00000138646|ENST00000264350|HERC5 ENST00000510223.5_1_4:89394995-89425581:+|nuORF ENST00000510223.5_1_4:89394995-89425581:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.281494140625 2 532.274564 1062.53457 0.10228 5.4442E-05 2.3387 0.0012448 2.441 0.0012993 532.2746135541951 57.283 0.7886 54.107 53.751 54.54 -3.1761 51 21 3 0 0 0 0.44932 1 10659 10659 22.736 2.2827 1 2451400 8106 4193 5065 5069 8339 8339 0.0058084871798200766 DVLPAPHT 8 Unmodified _DVLPAPHT_ 0 0 0 ENST00000531207.5_1_11:76119663-76122142:+|nuORF ENST00000531207.5_1_11:76119663-76122142:+|nuORF ENST00000531207.5_1_11:76119663-76122142:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2507629394531 2 425.226885 848.439217 NaN NaN NaN NaN NaN NaN NaN 50.304 1 50.304 49.804 50.804 0 0 0 0 0.23782 1 9524 9524 0.12286 0 1 8107 10966 5066 5070 8340 8340 0.0089354031762241 DVLQKAEA 8 Unmodified _DVLQKAEA_ 0 0 0 REV__tr|U7SQX0|U7SQX0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01832PE=4SV=1 REV__tr|U7SQX0|U7SQX0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01832PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2359313964844 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.781 1 63.781 63.281 64.281 0 0 0 0 0.21171 1 12270 12270 15.847 3.3156 1 + 8108 25021 5067 5071 8341 8341 0.019015056264720442 DVLTCLHK 8 Unmodified _DVLTCLHK_ 0 0 0 REV__ENST00000556029.5_2_12:98941636-98941723:+|nuORF REV__ENST00000556029.5_2_12:98941636-98941723:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16961669921875 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 20.008 1 20.008 19.508 20.508 0 0 0 0 0.21486 1 3293 3293 3.5965 0 1 + 8109 22991 5068 5072 8342 8342 0.018144425083619353 DVLTCLHK 8 Unmodified _DVLTCLHK_ 0 0 0 REV__ENST00000556029.5_2_12:98941636-98941723:+|nuORF REV__ENST00000556029.5_2_12:98941636-98941723:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.170166015625 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 139.46 1 139.46 138.96 139.96 0 0 0 0 0.21486 1 27721 27721 0.40072 0 1 + 8110 22991 5068 5072 8343 8343 0.018144425083619353 DVLTCLHK 8 Unmodified _DVLTCLHK_ 0 0 0 REV__ENST00000556029.5_2_12:98941636-98941723:+|nuORF REV__ENST00000556029.5_2_12:98941636-98941723:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.169921875 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 178.68 1 173.78 173.28 174.28 -4.9088 0 0 0 0.21486 1 35646 35646 1.6526 0 1 + 8111 22991 5068 5072 8344 8344 0.018144425083619353 DVPCSHFCN 9 Unmodified _DVPCSHFCN_ 0 0 0 C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant;ENSG00000182326|ENST00000360817|C1S;C1S|p.W283Lfs*14|1|0.37|ENSG00000182326|chr12:7065934-7065935|-/A|frameshift_variant;ENST00000463798.1_1_12:7171527-7172615:+|nuORF C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 341.135498046875 3 341.133722 1020.37934 0.06191 2.1119E-05 -0.05501 -1.8766E-05 0.0068999 2.3538E-06 341.1341863509672 54.544 1.3661 51.408 50.835 52.201 -3.1352 82 38 3 0 0 0 0.48659 1 10131 10131 0.87518 0 1 8421300 8112 351 5069 5073 8345 8345 -0.13003841679585548 DVPIEIQN 8 Unmodified _DVPIEIQN_ 0 0 0 LRRD1|p.K461Q|1|0.26|ENSG00000240720|chr7:92163822-92163822|T/G|missense_variant LRRD1|p.K461Q|1|0.26|ENSG00000240720|chr7:92163822-92163822|T/G|missense_variant LRRD1|p.K461Q|1|0.26|ENSG00000240720|chr7:92163822-92163822|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24603271484375 2 464.242732 926.470912 0.21079 9.7856E-05 -0.38943 -0.00018079 -0.17865 -8.2935E-05 464.24250111444337 120.01 1.761 115.49 115.08 116.84 -4.5221 93 49 3 0 0 0 8448 1 23742 23742 14.838 1.2234 1 10811000 8113 12090 5070 5074 8346 8346 0.0047348828089752715 DVPRLSLPGK 10 Unmodified _DVPRLSLPGK_ 0 0 0 nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF;ENST00000392495.7_1_12:121202804-121206971:-|nuORF;ENSG00000157837|ENST00000353487|SPPL3 nc|ENSG00000157837|Q8TCT6-3|SPPL3 nc|ENSG00000157837|Q8TCT6-3|SPPL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2666015625 2 541.321848 1080.62914 NaN NaN NaN NaN NaN NaN NaN 108.74 1 104.29 103.79 104.79 -4.4518 0 0 0 2.8426 1 20868 20868 0.063865 0 1 8114 5143 5071 5075 8347 8347 0.09205407259992171 DVPTAYCYTF 10 Unmodified _DVPTAYCYTF_ 0 0 0 ENSG00000146530|ENST00000275358|VWDE;VWDE|p.N589*|1|0.33|ENSG00000146530|chr7:12370687-12370688|-/A|frameshift_variant ENSG00000146530|ENST00000275358|VWDE ENSG00000146530|ENST00000275358|VWDE MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.254150390625 2 590.254982 1178.49541 NaN NaN NaN NaN NaN NaN NaN 166.77 1 161.98 161.48 162.48 -4.7898 0 0 0 0.22544 1 33543 33543 19.257 7.0163 1 8115 4659 5072 5076 8348 8348 -0.08669619627903558 DVQKNTVKF 9 Unmodified _DVQKNTVKF_ 0 0 0 nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;ENST00000459993.5_1_3:56657067-56667992:-|nuORF nc|ENSG00000163946|Q9UK61-2|TASOR nc|ENSG00000163946|Q9UK61-2|TASOR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2019958496094 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 116.13 1 116.13 115.63 116.63 0 0 0 0 0.23508 1 22864 22864 4.897 0.36815 1 8116 5489 5073 5077 8349 8349 0.046171279889904326 DVRAHARTII 10 Unmodified _DVRAHARTII_ 0 0 0 UHRF1|p.R207H|1|0.14|ENSG00000276043|chr19:4932791-4932791|G/A|missense_variant UHRF1|p.R207H|1|0.14|ENSG00000276043|chr19:4932791-4932791|G/A|missense_variant UHRF1|p.R207H|1|0.14|ENSG00000276043|chr19:4932791-4932791|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3189086914062 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 50.893 1 48.011 47.511 48.511 -2.8824 0 0 0 2.8426 1 9662 9662 0.013265 0.0049887 1 8117 26550 5074 5078 8350 8350 0.08778730240078403 DVRDFTKV 8 Unmodified _DVRDFTKV_ 0 0 0 UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000152818|P46939-4|UTRN UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2643127441406 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 0.71876 1 11273 11273 11.64 0.81637 1 39769000 8118 4942 5075 5079 8351 8351 0.023328834091330464 DVRELIERKYY 11 Unmodified _DVRELIERKYY_ 0 0 0 REV__ENST00000475698.1_1_1:201982922-201984448:+|nuORF REV__ENST00000475698.1_1_1:201982922-201984448:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.396484375 2 742.398815 1482.78308 NaN NaN NaN NaN NaN NaN NaN 85.942 1 82.215 81.715 82.715 -3.727 0 0 0 0.22632 1 16801 16801 0.50596 0.50539 1 + 8119 16263 5076 5080 8352 8352 0.060997722348702155 DVRGGYISQA 10 Unmodified _DVRGGYISQA_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.269287109375 2 533.269813 1064.52507 0.057383 3.0601E-05 -0.64602 -0.0003445 -0.58864 -0.0003139 533.2694805886441 45.893 0.4854 43.052 42.791 43.276 -2.8409 19 13 2 0 0 0 0.47611 1 8670 8670 6.6304 6.2221 1 1461700 + 8120 19304 5077 5081 8353 8353 -0.004609195675357114 DVRSVWGP 8 Unmodified _DVRSVWGP_ 0 0 0 REV__ENSG00000186603|ENST00000334815|HPDL REV__ENSG00000186603|ENST00000334815|HPDL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23858642578125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 74.715 1 74.715 74.215 75.215 0 0 0 0 0.21486 1 14506 14506 11.64 2.2929 1 + 8121 19040 5078 5082 8354 8354 0.0003634506618936939 DVRWFDAIG 9 Unmodified _DVRWFDAIG_ 0 0 0 REV__ENST00000421703.5_1_1:183440373-183440658:-|nuORF REV__ENST00000421703.5_1_1:183440373-183440658:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2841186523438 2 539.769448 1077.52434 0.1526 8.2369E-05 -0.13122 -7.083E-05 0.021378 1.1539E-05 539.7693665457531 67.217 0.83511 64.108 63.756 64.591 -3.1086 66 23 4 0 0 0 0.5354 1 13042 13042 18.146 1.0335 1 34137000 + 8122 21514 5079 5083 8355 8355 -0.01131714216603541 DVSGHWAGT 9 Unmodified _DVSGHWAGT_ 0 0 0 ENST00000600238.1_1_19:17973543-17973672:+|nuORF ENST00000600238.1_1_19:17973543-17973672:+|nuORF ENST00000600238.1_1_19:17973543-17973672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2563171386719 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 74.584 1 70.908 70.408 71.408 -3.6764 0 0 0 0.22621 1 14100 14100 15.847 5.0233 1 8123 11700 5080 5084 8356 8356 -0.06317122210202797 DVSGHWAGT 9 Unmodified _DVSGHWAGT_ 0 0 0 ENST00000600238.1_1_19:17973543-17973672:+|nuORF ENST00000600238.1_1_19:17973543-17973672:+|nuORF ENST00000600238.1_1_19:17973543-17973672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2567138671875 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 74.452 1 70.858 70.358 71.358 -3.594 0 0 0 0.22621 1 14141 14141 15.847 3.3156 1 8124 11700 5080 5084 8357 8357 -0.06317122210202797 DVSHCEAI 8 Unmodified _DVSHCEAI_ 0 0 0 REV__nc|ENSG00000113971|Q7Z494-6|NPHP3 REV__nc|ENSG00000113971|Q7Z494-6|NPHP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2277526855469 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 70.314 1 66.735 66.235 67.235 -3.5798 0 0 0 0.22666 1 13251 13251 0.62683 0.56284 1 + 8125 15358 5081 5085 8358 8358 -0.07147286693464139 DVSLGNDAAV 10 Unmodified _DVSLGNDAAV_ 0 0 0 nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2;nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2 nc|ENSG00000100320|O43251-3|RBFOX2 nc|ENSG00000100320|O43251-3|RBFOX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23736572265625 2 480.735271 959.45599 -0.10865 -5.223E-05 0.31727 0.00015252 0.20862 0.00010029 480.7353767990116 52.294 0.93935 49.199 48.716 49.656 -3.0954 71 26 4 0 0 0 0.62483 1 9586 9586 26.268 8.1218 1 11542000 8126 1952 5082 5086 8359 8359 -0.025360035871017317 DVSRNDIP 8 Unmodified _DVSRNDIP_ 0 0 0 nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB;SCRIB|p.A803Pfs*121|1|0.21|ENSG00000180900|chr8:143805375-143805375|C/-|frameshift_variant;SCRIB|p.T966Pfs*9|4|0.48|ENSG00000180900|chr8:143804682-143804682|G/-|frameshift_variant;nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160|SCRIB nc|ENSG00000180900|Q14160|SCRIB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2959899902344 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 179.04 1 174.18 173.68 174.68 -4.8685 0 0 0 0.2343 1 35652 35652 1.7423 0.52744 1 8127 6699 5083 5087 8360 8360 -0.0148856652166387 DVSSLELRWR 10 Unmodified _DVSSLELRWR_ 0 0 0 REV__ENST00000269973.9_1_19:44438625-44438820:-|nuORF REV__ENST00000269973.9_1_19:44438625-44438820:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.779296875 2 630.838394 1259.66223 NaN NaN NaN NaN NaN NaN NaN 89.987 1 89.987 89.487 90.487 0 0 0 0 0.22544 1 17576 17576 19.257 2.1441 1 + 8128 20267 5084 5088 8361 8361 0.04278989312047088 DVSSLKEKKVK 11 Unmodified _DVSSLKEKKVK_ 0 0 0 REV__SAFB2|p.E499K|1|0.34|ENSG00000130254|chr19:5604647-5604647|C/T|missense_variant REV__SAFB2|p.E499K|1|0.34|ENSG00000130254|chr19:5604647-5604647|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7568969726562 2 630.879727 1259.7449 NaN NaN NaN NaN NaN NaN NaN 116.47 1 112.11 111.61 112.61 -4.3585 0 0 0 0.22632 1 22424 22424 0.11104 0.10966 1 + 8129 24590 5085 5089 8362 8362 0.12541886320173035 DVTELMFLN 9 Unmodified _DVTELMFLN_ 0 0 0 REV__ENSG00000147471|ENST00000328195|PLPBP REV__ENSG00000147471|ENST00000328195|PLPBP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2616577148438 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 90.406 1 90.406 89.906 90.906 0 0 0 0 0.22621 1 17658 17658 15.847 2.8047 1 + 8130 16936 5086 5090 8363 8363 -0.020890292481908546 DVTSGDHGDY 10 Unmodified _DVTSGDHGDY_ 0 0 0 ENSG00000120054|ENST00000370418|CPN1 ENSG00000120054|ENST00000370418|CPN1 ENSG00000120054|ENST00000370418|CPN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.270263671875 2 533.209618 1064.40468 0.18743 9.9942E-05 -1.1735 -0.00062571 -0.98605 -0.00052577 533.2087466304598 116.68 0.66335 112.19 111.79 112.46 -4.486 61 18 5 0 0 0 1.1309 1 22933 22933 0.063865 0.063865 1 4762200 8131 3115 5087 5091 8364 8364 -0.12494372351784477 DVVEDKIY 8 Unmodified _DVVEDKIY_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1;LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant;LRP1|p.D1366Rfs*54|1|0.17|ENSG00000123384|chr12:57177143-57177144|-/CA|frameshift_variant ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2676086425781 2 490.75039 979.486227 -0.006836 -3.3548E-06 0.35588 0.00017465 0.34904 0.00017129 490.7504446873536 125.02 1.3343 120.37 119.89 121.23 -4.6495 77 37 3 0 0 0 0.89225 1 24133 24133 6.2058 0 1 16195000 8132 3265 5088 5092 8365 8365 -0.004336449219181304 DVVLSRVP 8 Unmodified _DVVLSRVP_ 0 0 0 ENST00000484061.5_1_2:47221411-47251446:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A ENST00000484061.5_1_2:47221411-47251446:+|nuORF ENST00000484061.5_1_2:47221411-47251446:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 444.2577209472656 2 442.763635 883.512717 -0.7785 -0.00034469 1.0813 0.00047874 0.30276 0.00013405 442.7640577528684 14.455 0.48691 13.341 13.014 13.501 -1.1142 32 13 4 0 0 0 8448 1 2161 2161 0.62683 0 1 3409900 8133 1408 5089 5093 8366 8366 0.06630088760084618 DVVMLQTGV 9 Unmodified _DVVMLQTGV_ 0 0 0 ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2 ENSG00000024048|ENST00000372901|UBR2 ENSG00000024048|ENST00000372901|UBR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2431335449219 2 481.254785 960.495018 0.35991 0.00017321 -0.33465 -0.00016105 0.025254 1.2154E-05 481.2547014183136 158.3 0.53458 153.02 152.62 153.15 -5.2712 22 14 2 0 0 0 0.5428 1 30657 30657 4.897 3.2051 1 942240 8134 1135 5090 5094 8367 8367 0.013190054429401243 DVVVAAGEPA 10 Unmodified _DVVVAAGEPA_ 0 0 0 ROBO2|p.W347Lfs*21|1|0.36|ENSG00000185008|chr3:77546436-77546437|-/T|frameshift_variant;ROBO2|p.K260Rfs*19|1|0.46|ENSG00000185008|chr3:77493351-77493351|A/-|frameshift_variant;ROBO2|p.P740Tfs*14|1|0.27|ENSG00000185008|chr3:77577498-77577499|-/C|frameshift_variant;ROBO2|p.G821Wfs*7|1|0.37|ENSG00000185008|chr3:77580078-77580079|-/T|frameshift_variant;nc|ENSG00000185008|Q9HCK4-2|ROBO2;ROBO2|p.K1290Nfs*20|1|0.44|ENSG00000185008|chr3:77634974-77634974|A/-|frameshift_variant;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2 ROBO2|p.W347Lfs*21|1|0.36|ENSG00000185008|chr3:77546436-77546437|-/T|frameshift_variant ROBO2|p.W347Lfs*21|1|0.36|ENSG00000185008|chr3:77546436-77546437|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2469177246094 2 464.242732 926.470912 0.56411 0.00026189 -0.59048 -0.00027413 -0.026372 -1.2243E-05 464.24236945401276 120.17 1.0128 115.53 115.17 116.18 -4.645 66 28 3 0 0 0 0.16385 1 23173 23173 12.228 7.7506 1 9599600 8135 25618 5091 5095 8368 8368 0.0047348828089752715 DVWNFKAW 8 Unmodified _DVWNFKAW_ 0 0 0 CCR7|p.R54W|1|0.35|ENSG00000126353|chr17:40555719-40555719|G/A|missense_variant CCR7|p.R54W|1|0.35|ENSG00000126353|chr17:40555719-40555719|G/A|missense_variant CCR7|p.R54W|1|0.35|ENSG00000126353|chr17:40555719-40555719|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.263427734375 2 533.261259 1064.50797 -0.2104 -0.0001122 -0.96992 -0.00051722 -1.1803 -0.00062942 533.7622796524366 39.189 1.0859 36.64 36.225 37.311 -2.5491 59 30 4 0 0 0 0.69031 1 7218 7218 15.847 1.9411 1 2173500 8136 435 5092 5096 8369 8369 -0.021707953826762605 DVYFSKLG 8 Unmodified _DVYFSKLG_ 0 0 0 ENST00000262809.8_1_19:18554062-18554356:-|nuORF ENST00000262809.8_1_19:18554062-18554356:-|nuORF ENST00000262809.8_1_19:18554062-18554356:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 155.08 1 155.08 154.58 155.58 0 0 0 0 0.21486 1 31084 31084 1.8442 0.19162 1 8137 8317 5093 5097 8370 8370 0.00354693631857117 DVYTVDAAYY 10 Unmodified _DVYTVDAAYY_ 0 0 0 ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1;ENST00000482260.1_1_X:48563729-48565958:+|nuORF;ENST00000462786.1_1_X:48564736-48564922:+|nuORF ENSG00000101945|ENST00000376687|SUV39H1 ENSG00000101945|ENST00000376687|SUV39H1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2642211914062 2 590.263862 1178.51317 NaN NaN NaN NaN NaN NaN NaN 127.06 1 122.27 121.77 122.77 -4.7958 0 0 0 0.22588 1 24390 24390 7.2892 2.0586 1 8138 2099 5094 5098 8371 8371 -0.06894581101369113 DWARLRWFVTI 11 Unmodified _DWARLRWFVTI_ 0 0 0 ENSG00000125531|ENST00000370097|FNDC11 ENSG00000125531|ENST00000370097|FNDC11 ENSG00000125531|ENST00000370097|FNDC11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 488.2685852050781 3 488.269978 1461.7881 NaN NaN NaN NaN NaN NaN NaN 135.17 1 130.53 130.03 131.03 -4.6399 0 0 0 0.22632 1 26661 26661 1.4074 0 1 8139 3367 5095 5099 8372 8372 0.07568120888117846 DWKKLLEF 8 Unmodified _DWKKLLEF_ 0 0 0 SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant;SYNJ2|p.L1226Tfs*32|1|0.22|ENSG00000078269|chr6:158093029-158093030|-/C|frameshift_variant;nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20135498046875 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 88.31 1 84.517 84.017 85.017 -3.7926 0 0 0 0.21486 1 17275 17275 9.3831 0.40688 1 8140 1575 5096 5100 8373 8373 0.05019217482708882 DWKRNAERWR 10 Unmodified _DWKRNAERWR_ 0 0 0 ENST00000302904.8_1_17:42294008-42298982:-|nuORF ENST00000302904.8_1_17:42294008-42298982:-|nuORF ENST00000302904.8_1_17:42294008-42298982:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 472.87371826171875 3 472.912964 1415.71706 NaN NaN NaN NaN NaN NaN NaN 12.69 1 12.69 12.19 13.19 0 0 0 0 2.8426 1 1785 1785 1.9064 0.45126 1 8141 8581 5097 5101 8374 8374 0.025834209032836952 DWNLVFKWDCM 11 Unmodified _DWNLVFKWDCM_ 0 0 0 GALNT2|p.Y284C|1|0.43|ENSG00000143641|chr1:230249217-230249217|A/G|missense_variant GALNT2|p.Y284C|1|0.43|ENSG00000143641|chr1:230249217-230249217|A/G|missense_variant GALNT2|p.Y284C|1|0.43|ENSG00000143641|chr1:230249217-230249217|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 728.3370361328125 2 728.82304 1455.63153 NaN NaN NaN NaN NaN NaN NaN 11.817 1 10.913 10.413 11.413 -0.90401 0 0 0 0.22632 1 1595 1595 0.026206 0 1 8142 11836 5098 5102 8375 8375 -0.078062483888516 DWQRQLRYYWD 11 Unmodified _DWQRQLRYYWD_ 0 0 0 ENSG00000115423|ENST00000389394|DNAH6;DNAH6|p.S3773Lfs*5|1|0.09|ENSG00000115423|chr2:84796377-84796377|T/-|frameshift_variant;DNAH6|p.R2682Kfs*27|1|0.42|ENSG00000115423|chr2:84701316-84701317|-/A|frameshift_variant;DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant;nc|ENSG00000115423|Q9C0G6-4|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7901611328125 3 543.591668 1627.75317 NaN NaN NaN NaN NaN NaN NaN 157.22 1 152.43 151.93 152.93 -4.7885 0 0 0 0.22632 1 31266 31266 0.094841 0 1 8143 2855 5099 5103 8376 8376 -0.03559166710488171 DWRDPVPLR 9 Unmodified _DWRDPVPLR_ 0 0 0 RAD54L2|p.E258Lfs*29|1|0.1|ENSG00000164080|chr3:51630877-51630878|-/CTCA|frameshift_variant RAD54L2|p.E258Lfs*29|1|0.1|ENSG00000164080|chr3:51630877-51630878|-/CTCA|frameshift_variant RAD54L2|p.E258Lfs*29|1|0.1|ENSG00000164080|chr3:51630877-51630878|-/CTCA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 385.2066650390625 3 385.208607 1152.60399 NaN NaN NaN NaN NaN NaN NaN 52.902 1 52.902 52.402 53.402 0 0 0 0 0.23508 1 10062 10062 11.495 0.6952 1 8144 12856 5100 5104 8377 8377 0.03379352457386631 DWSYVWWTLW 10 Unmodified _DWSYVWWTLW_ 0 0 0 REV__ENST00000494604.1_1_4:110605598-110605826:+|nuORF REV__ENST00000494604.1_1_4:110605598-110605826:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2453918457031 3 481.224034 1440.65027 NaN NaN NaN NaN NaN NaN NaN 27.268 1 27.268 26.768 27.768 0 0 0 0 2.8426 1 4805 4805 1.9275 0.47239 1 + 8145 13851 5101 5105 8378 8378 -0.05242627431152869 DWVFMCFF 8 Unmodified _DWVFMCFF_ 0 0 0 nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.778076171875 2 547.727349 1093.44015 NaN NaN NaN NaN NaN NaN NaN 59.065 1 59.065 58.565 59.565 0 0 0 0 0.23749 1 11313 11313 0.12286 0.049601 1 8146 1741 5102 5106 8379 8379 -0.10283704629341628 DWVFMCFF 8 Unmodified _DWVFMCFF_ 0 0 0 nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.78173828125 2 547.727349 1093.44015 NaN NaN NaN NaN NaN NaN NaN 114.82 1 110.26 109.76 110.76 -4.555 0 0 0 0.23366 1 22045 22045 0.62683 0 1 8147 1741 5102 5106 8380 8380 -0.10283704629341628 DWVFMCFF 8 Unmodified _DWVFMCFF_ 0 0 0 nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7869262695312 2 547.727349 1093.44015 NaN NaN NaN NaN NaN NaN NaN 114.3 1 109.99 109.49 110.49 -4.3136 0 0 0 0.23366 1 22018 22018 0.12286 0 1 8148 1741 5102 5106 8381 8381 -0.10283704629341628 DWVKLLFSA 9 Unmodified _DWVKLLFSA_ 0 0 0 REV__POT1|p.G186D|1|0.12|ENSG00000128513|chr7:124859102-124859102|C/T|missense_variant REV__POT1|p.G186D|1|0.12|ENSG00000128513|chr7:124859102-124859102|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2008056640625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 84.281 1 84.281 83.781 84.781 0 0 0 0 0.23508 1 16434 16434 3.8763 0.27984 1 + 8149 15922 5103 5107 8382 8382 0.05019217482708882 DWWERKRKWCF 11 Unmodified _DWWERKRKWCF_ 0 0 0 REV__nc|ENSG00000205482|P0DV79|SPDYE18 REV__nc|ENSG00000205482|P0DV79|SPDYE18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7825927734375 3 547.269872 1638.78779 0.17372 9.5071E-05 0.94806 0.00051884 1.1218 0.00061391 547.27134494171 153.67 0.24135 148.4 148.26 148.5 -5.2669 8 6 2 0 0 0 0.89134 1 29763 29763 0.026206 0 1 903930 + 8150 18934 5104 5108 8383 8383 -0.006056221033986731 DWYTRILWIE 10 Unmodified _DWYTRILWIE_ 0 0 0 REV__nc|ENSG00000271271|P0DTE5-2|UGT2A2 REV__nc|ENSG00000271271|P0DTE5-2|UGT2A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2417907714844 3 465.574955 1393.70304 NaN NaN NaN NaN NaN NaN NaN 124.02 1 119.44 118.94 119.94 -4.5757 0 0 0 2.8426 1 24452 24452 0.063865 0.0633 1 + 8151 16250 5105 5109 8384 8384 0.02193330631689605 DWYTSYLFHPI 11 Unmodified _DWYTSYLFHPI_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2412414550781 3 481.231077 1440.6714 NaN NaN NaN NaN NaN NaN NaN 22.126 1 20.652 20.152 21.152 -1.4742 0 0 0 0.22632 1 3768 3768 1.4551 0 1 8152 7832 5106 5110 8385 8385 -0.0313066212229387 DYAAISRAI 9 Unmodified _DYAAISRAI_ 0 0 0 ENST00000472429.1_1_21:30971125-31311818:-|nuORF;GRIK1|p.W655Lfs*33|1|0.12|ENSG00000171189|chr21:29577129-29577130|CC/-|frameshift_variant;GRIK1|p.W655Ffs*36|1|0.12|ENSG00000171189|chr21:29577130-29577131|-/AGATAGA|frameshift_variant;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1 ENST00000472429.1_1_21:30971125-31311818:-|nuORF ENST00000472429.1_1_21:30971125-31311818:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26470947265625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 99.063 1 99.063 98.563 99.563 0 0 0 0 0.22962 1 19425 19425 14.838 0 1 8153 6129 5107 5111 8386 8386 0.023328834091330464 DYAEMYDYGCD 11 Unmodified _DYAEMYDYGCD_ 0 0 0 REV__ENSG00000095587|ENST00000357947|TLL2 REV__ENSG00000095587|ENST00000357947|TLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 673.0554809570312 2 672.723386 1343.43222 NaN NaN NaN NaN NaN NaN NaN 9.0063 1 7.9716 7.4716 8.4716 -1.0347 0 0 0 0.23698 1 886 886 0 0 1 + 8154 14612 5108 5112 8387 8387 -0.22575973198081556 DYAGAKISGAI 11 Unmodified _DYAGAKISGAI_ 0 0 0 REV__tr|U7T3P3|U7T3P3_FUSNUTwo-componentsystem,NtrCfamily,nitrogenregulationresponseregulatorGlnGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00481PE=4SV=1 REV__tr|U7T3P3|U7T3P3_FUSNUTwo-componentsystem,NtrCfamily,nitrogenregulationresponseregulatorGlnGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00481PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.283203125 2 533.282389 1064.55022 0.084383 4.5E-05 0.034859 1.859E-05 0.11924 6.3589E-05 533.2823400911914 94.421 1.1362 90.577 89.851 90.987 -3.844 95 32 4 0 0 0 0.45791 1 17972 17972 32.786 0.4802 1 25601000 + 8155 25370 5109 5113 8388 8388 0.020531352350417365 DYDCDQDDY 9 Unmodified _DYDCDQDDY_ 0 0 0 MYO10|p.Y1091C|1|0.3|ENSG00000145555|chr5:16701123-16701123|T/C|missense_variant MYO10|p.Y1091C|1|0.3|ENSG00000145555|chr5:16701123-16701123|T/C|missense_variant MYO10|p.Y1091C|1|0.3|ENSG00000145555|chr5:16701123-16701123|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3270874023438 2 576.177126 1150.3397 NaN NaN NaN NaN NaN NaN NaN 113.69 1 113.69 113.19 114.19 0 0 0 0 0.19624 1 22357 22357 0.073264 0 1 8156 12186 5110 5114 8389 8389 -0.2294573493995813 DYDEDDDDDSD 11 Unmodified _DYDEDDDDDSD_ 0 0 0 ENSG00000188613|ENST00000425699|NANOS1 ENSG00000188613|ENST00000425699|NANOS1 ENSG00000188613|ENST00000425699|NANOS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 659.6887817382812 2 659.689306 1317.36406 NaN NaN NaN NaN NaN NaN NaN 178.21 1 178.21 177.71 178.71 0 0 0 0 0.22632 1 36919 36919 0 0 1 8157 7181 5111 5115 8390 8390 -0.2819284804340896 DYDKLNYY 8 Unmodified _DYDKLNYY_ 0 0 0 REV__tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1 REV__tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7784423828125 2 547.245472 1092.47639 0.63074 0.00034517 -0.43906 -0.00024027 0.19168 0.0001049 547.245135322363 77.29 0.65736 77.29 76.944 77.602 0 45 18 3 0 0 0 0.16655 1 15005 15005 49.933 4.2334 1 6239300 + 8158 25371 5112 5116 8391 8391 -0.06614832927266434 DYDRLQREVY 10 Unmodified _DYDRLQREVY_ 0 0 0 REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7557373046875 3 452.889603 1355.64698 0.59506 0.0002695 -0.63367 -0.00028698 -0.038613 -1.7487E-05 452.8891906005317 22.811 0.34327 21.258 21.098 21.441 -1.5532 19 9 3 0 0 0 0.53283 1 3910 3910 0.69767 0.65388 1 608770 + 8159 18030 5113 5117 8392 8392 -0.016619222757981333 DYDRLQREVY 10 Unmodified _DYDRLQREVY_ 0 0 0 REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 452.889603 1355.64698 0.2351 0.00010647 -0.23753 -0.00010757 -0.0024252 -1.0984E-06 452.88941817537574 21.105 0.34632 21.105 20.951 21.298 0 -0.089641 -0.0002045 NaN 0.69767 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 847470 + 8160 18030 5113 5117 -0.016619222757981333 DYDRLQREVY 10 Unmodified _DYDRLQREVY_ 0 0 0 REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 452.889603 1355.64698 0.59506 0.0002695 -0.63367 -0.00028698 -0.038613 -1.7487E-05 452.8891906005317 22.811 0.34327 21.258 21.098 21.441 -1.5532 0.063337 -0.00074274 NaN 0.69767 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 608770 + 8161 18030 5113 5117 -0.016619222757981333 DYDRLQREVY 10 Unmodified _DYDRLQREVY_ 0 0 0 REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 452.889603 1355.64698 -0.15063 -6.8217E-05 -0.0011315 -5.1245E-07 -0.15176 -6.8729E-05 452.889713205853 22.679 0.32015 21.225 21.049 21.37 -1.4535 0.030921 0.00011668 NaN 0.69767 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 728140 + 8162 18030 5113 5117 -0.016619222757981333 DYDRLQREVY 10 Unmodified _DYDRLQREVY_ 0 0 0 REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 452.889603 1355.64698 -0.53435 -0.000242 0.42978 0.00019464 -0.10457 -4.736E-05 452.8898859640054 22.978 0.26556 21.19 21.059 21.324 -1.7886 -0.0046173 0.00070214 NaN 0.69767 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 502280 + 8163 18030 5113 5117 -0.016619222757981333 DYETGHEG 8 Unmodified _DYETGHEG_ 0 0 0 REV__ENSG00000184281|ENST00000333256|TSSC4 REV__ENSG00000184281|ENST00000333256|TSSC4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75933837890625 2 454.175047 906.33554 NaN NaN NaN NaN NaN NaN NaN 123.91 1 119.34 118.84 119.84 -4.5757 0 0 0 0.23487 1 24430 24430 0.25148 0.18749 1 + 8164 18887 5114 5118 8393 8393 -0.1213741158069297 DYFGNGRV 8 Unmodified _DYFGNGRV_ 0 0 0 nc|ENSG00000240038|P19961-2|AMY2B;ENSG00000243480|ENST00000414303|AMY2A;ENSG00000240038|ENST00000684275|AMY2B;ENSG00000237763|ENST00000370083|AMY1A;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000174876|ENST00000330330|AMY1B;CON__Q3MHH8 nc|ENSG00000240038|P19961-2|AMY2B nc|ENSG00000240038|P19961-2|AMY2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2593994140625 2 464.219591 926.42463 -0.2694 -0.00012506 0.79326 0.00036825 0.52386 0.00024319 464.2199736068987 52.876 0.56141 49.992 49.722 50.283 -2.8837 29 15 3 0 0 0 0.73426 1 10068 10068 9.3474 0 1 1742500 + 8165 693 5115 5119 8394 8394 -0.04152531830504813 DYFGNGRV 8 Unmodified _DYFGNGRV_ 0 0 0 nc|ENSG00000240038|P19961-2|AMY2B;ENSG00000243480|ENST00000414303|AMY2A;ENSG00000240038|ENST00000684275|AMY2B;ENSG00000237763|ENST00000370083|AMY1A;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000174876|ENST00000330330|AMY1B;CON__Q3MHH8 nc|ENSG00000240038|P19961-2|AMY2B nc|ENSG00000240038|P19961-2|AMY2B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.219591 926.42463 0.3613 0.00016772 0.37701 0.00017502 0.73831 0.00034274 464.21986184437867 49.932 0.47572 49.932 49.62 50.095 0 -0.015854 6.4107E-06 NaN 9.3474 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 935730 + 8166 693 5115 5119 -0.04152531830504813 DYFGNGRV 8 Unmodified _DYFGNGRV_ 0 0 0 nc|ENSG00000240038|P19961-2|AMY2B;ENSG00000243480|ENST00000414303|AMY2A;ENSG00000240038|ENST00000684275|AMY2B;ENSG00000237763|ENST00000370083|AMY1A;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000174876|ENST00000330330|AMY1B;CON__Q3MHH8 nc|ENSG00000240038|P19961-2|AMY2B nc|ENSG00000240038|P19961-2|AMY2B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.219591 926.42463 0.010398 4.8272E-06 0.04746 2.2032E-05 0.057859 2.6859E-05 464.21960541580785 53.013 0.4896 49.926 49.654 50.144 -3.0876 -0.022187 -0.00029956 NaN 9.3474 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1424500 + 8167 693 5115 5119 -0.04152531830504813 DYFGNGRV 8 Unmodified _DYFGNGRV_ 0 0 0 nc|ENSG00000240038|P19961-2|AMY2B;ENSG00000243480|ENST00000414303|AMY2A;ENSG00000240038|ENST00000684275|AMY2B;ENSG00000237763|ENST00000370083|AMY1A;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000174876|ENST00000330330|AMY1B;CON__Q3MHH8 nc|ENSG00000240038|P19961-2|AMY2B nc|ENSG00000240038|P19961-2|AMY2B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.219591 926.42463 -0.048225 -2.2387E-05 0.48706 0.0002261 0.43884 0.00020372 464.21983340093385 53.037 0.58333 49.942 49.656 50.239 -3.0954 -0.0062181 0.00010859 NaN 9.3474 27 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1061800 + 8168 693 5115 5119 -0.04152531830504813 DYFNRNCY 8 Unmodified _DYFNRNCY_ 0 0 0 USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8 USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7813720703125 2 547.721641 1093.42873 0.29325 0.00016062 -0.58771 -0.0003219 -0.29446 -0.00016128 547.721400580172 149.54 0.66286 144.81 144.42 145.08 -4.7323 26 18 2 0 0 0 0.88497 1 29662 29662 10.074 6.4869 1 2385800 8169 4180 5116 5120 8395 8395 -0.1142481039910308 DYFVLASF 8 Unmodified _DYFVLASF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23687744140625 2 481.236919 960.459284 NaN NaN NaN NaN NaN NaN NaN 36.38 1 36.38 35.88 36.88 0 0 0 0 0.22657 1 6704 6704 2.643 1.188 1 8170 2938 5117 5121 8396 8396 -0.022527087424236925 DYGEKRLY 8 Unmodified _DYGEKRLY_ 0 0 0 REV__ENST00000480947.1_1_10:104243895-104247966:-|nuORF REV__ENST00000480947.1_1_10:104243895-104247966:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2614135742188 2 522.261456 1042.50836 -0.043505 -2.2721E-05 0.061394 3.2064E-05 0.01789 9.343E-06 522.2614723066043 83.044 0.75711 79.345 78.933 79.69 -3.6985 40 21 2 0 0 0 0.60622 1 15846 15846 21.747 0 1 3933500 + 8171 16438 5118 5122 8397 8397 -0.011194204534604069 DYGKDAGEDKY 11 Unmodified _DYGKDAGEDKY_ 0 0 0 tr|U7SM07|U7SM07_FUSNUFMN-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02007PE=4SV=1 tr|U7SM07|U7SM07_FUSNUFMN-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02007PE=4SV=1 tr|U7SM07|U7SM07_FUSNUFMN-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02007PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7726440429688 2 630.772582 1259.53061 NaN NaN NaN NaN NaN NaN NaN 108.33 1 104.19 103.69 104.69 -4.135 0 0 0 0.224 1 20841 20841 13.042 0 1 8172 25998 5119 5123 8398 8398 -0.08877285566359205 DYIGRPDQ 8 Unmodified _DYIGRPDQ_ 0 0 0 REV__nc|ENSG00000161270|O60500-2|NPHS1 REV__nc|ENSG00000161270|O60500-2|NPHS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7683410644531 2 482.230156 962.445759 -0.13664 -6.5893E-05 0.59928 0.00028899 0.46264 0.0002231 482.230307305836 53.318 0.60904 50.223 49.901 50.51 -3.0954 23 17 2 0 0 0 0.97173 1 9815 9815 12.532 12.532 1 1186700 + 8173 17453 5120 5124 8399 8399 -0.03696566521659861 DYIMDEDQSK 10 Unmodified _DYIMDEDQSK_ 0 0 0 nc|ENSG00000196482|P62508-4|ESRRG;nc|ENSG00000196482|P62508-2|ESRRG;nc|ENSG00000196482|P62508-3|ESRRG;ENSG00000196482|ENST00000408911|ESRRG;nc|ENSG00000196482|P62508-5|ESRRG nc|ENSG00000196482|P62508-4|ESRRG nc|ENSG00000196482|P62508-4|ESRRG MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7676391601562 2 622.260993 1242.50743 0.40807 0.00025393 2.7079 0.001685 3.116 0.001939 622.266583006295 162.83 0.13971 162.83 162.76 162.9 0 7 3 3 0 0 0 0.75676 1 32768 32768 3.5965 0.31518 1 7087200 8174 7271 5121 5125 8400 8400 -0.1041204767536783 DYIQVGNQSA 10 Unmodified _DYIQVGNQSA_ 0 0 0 REV__PDPR|p.E826Kfs*5|1|0.12|ENSG00000090857|chr16:70156711-70156711|G/-|frameshift_variant REV__PDPR|p.E826Kfs*5|1|0.12|ENSG00000090857|chr16:70156711-70156711|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.780029296875 2 547.759278 1093.504 NaN NaN NaN NaN NaN NaN NaN 38.135 1 35.666 35.166 36.166 -2.4688 0 0 0 2.8426 1 7059 7059 3.104 1.3617 1 + 8175 14553 5122 5126 8401 8401 -0.03900929667042874 DYKRRLDL 8 Unmodified _DYKRRLDL_ 0 0 0 ENSG00000159905|ENST00000587682|ZNF221 ENSG00000159905|ENST00000587682|ZNF221 ENSG00000159905|ENST00000587682|ZNF221 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2065124511719 3 360.204974 1077.59309 NaN NaN NaN NaN NaN NaN NaN 118.39 1 113.78 113.28 114.28 -4.6106 0 0 0 0.2293 1 22717 22717 1.7423 0 1 8176 5224 5123 5127 8402 8402 0.0573995008314796 DYKYRPRKKSK 11 Unmodified _DYKYRPRKKSK_ 0 0 0 ENSG00000177732|ENST00000342665|SOX12 ENSG00000177732|ENST00000342665|SOX12 ENSG00000177732|ENST00000342665|SOX12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2577209472656 3 490.284287 1467.83103 NaN NaN NaN NaN NaN NaN NaN 22.457 1 21.004 20.504 21.504 -1.4535 0 0 0 0.22632 1 3582 3582 0.00056442 0 1 8177 6536 5124 5128 8403 8403 0.11582890945533109 DYLEWRARYYY 11 Unmodified _DYLEWRARYYY_ 0 0 0 REV__ENSG00000181523|ENST00000326317|SGSH REV__ENSG00000181523|ENST00000326317|SGSH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2859497070312 3 533.252652 1596.73613 0.58946 0.00031433 3.2562 0.0017364 3.8456 0.0020507 533.2554313314885 93.88 0.20245 89.736 89.584 89.786 -4.1435 6 5 2 0 0 0 0.96173 1 17904 17904 4.1166 2.787 1 695890 + 8178 18733 5125 5129 8404 8404 -0.03837087316264842 DYNDKYWDQRY 11 Unmodified _DYNDKYWDQRY_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2762451171875 3 522.560034 1564.65827 0.29343 0.00015333 0.77784 0.00040647 1.0713 0.0005598 522.8946760737789 137.95 0.21239 133.11 132.95 133.16 -4.84 7 5 2 0 0 0 0.88957 1 26585 26585 3.0723 1.6171 1 1491900 8179 3621 5126 5130 8405 8405 -0.10147144972347633 DYPTQPAK 8 Unmodified _DYPTQPAK_ 0 0 0 REV__MMP25|p.G558Vfs*2|1|0.27|ENSG00000008516|chr16:3059077-3059077|G/-|frameshift_variant REV__MMP25|p.G558Vfs*2|1|0.27|ENSG00000008516|chr16:3059077-3059077|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22802734375 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 43.412 1 40.693 40.193 41.193 -2.7191 0 0 0 0.21452 1 8138 8138 13.508 4.9146 1 + 8180 13902 5127 5131 8406 8406 -0.017787808905723068 DYQALRTSI 9 Unmodified _DYQALRTSI_ 0 0 0 nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC nc|ENSG00000141367|Q00610-2|CLTC nc|ENSG00000141367|Q00610-2|CLTC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2859497070312 2 533.780013 1065.54547 0.0084444 4.5074E-06 0.18987 0.00010135 0.19831 0.00010585 533.7799999283122 88.426 0.73074 88.426 88.092 88.823 0 30 20 2 0 0 0 0.57311 1 17292 17292 31.636 8.9777 1 2875400 8181 4356 5128 5132 8407 8407 0.015322510922942456 DYQALRTSI 9 Unmodified _DYQALRTSI_ 0 0 0 nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC nc|ENSG00000141367|Q00610-2|CLTC nc|ENSG00000141367|Q00610-2|CLTC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2806396484375 2 533.780013 1065.54547 0.61878 0.00033029 -0.31807 -0.00016978 0.3007 0.00016051 533.7797570071324 92.637 0.6257 88.493 88.106 88.731 -4.1435 28 17 2 0 0 0 0.21577 1 17635 17635 37.771 20.658 1 2775900 8182 4356 5128 5132 8408 8408 0.015322510922942456 DYQGIENFYHR 11 Unmodified _DYQGIENFYHR_ 0 0 0 REV__GALNTL5|p.W332Lfs*32|1|0.15|ENSG00000106648|chr7:152007907-152007908|-/T|frameshift_variant REV__GALNTL5|p.W332Lfs*32|1|0.15|ENSG00000106648|chr7:152007907-152007908|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2374267578125 3 481.221352 1440.64223 NaN NaN NaN NaN NaN NaN NaN 33.366 1 31.049 30.549 31.549 -2.3175 0 0 0 0.22632 1 6100 6100 1.4551 1.4289 1 + 8183 15060 5129 5133 8409 8409 -0.0604680641856703 DYRDVPPG 8 Unmodified _DYRDVPPG_ 0 0 0 nc|ENSG00000120907|P35348-8|ADRA1A nc|ENSG00000120907|P35348-8|ADRA1A nc|ENSG00000120907|P35348-8|ADRA1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2311706542969 2 459.719424 917.424296 -0.29544 -0.00013582 -1.4502 -0.00066667 -1.7456 -0.00080248 459.7194993842907 53.07 0.39084 50.187 49.892 50.283 -2.8837 13 10 2 0 0 0 0.66265 1 10063 10063 18.135 3.5533 1 657260 8184 12299 5130 5134 8410 8410 -0.03771951550368158 DYRHSYEYQ 9 Unmodified _DYRHSYEYQ_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;nc|ENSG00000176444|P49760-2|CLK2;ENST00000476983.5_1_1:155238132-155243105:-|nuORF;ENST00000484699.1_1_1:155239218-155239476:-|nuORF nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7667236328125 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 61.027 1 58.094 57.594 58.594 -2.9333 0 0 0 0.21065 1 11753 11753 20.454 5.6154 1 8185 6468 5131 5135 8411 8411 -0.09866428781083414 DYRHSYEYQ 9 Unmodified _DYRHSYEYQ_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;nc|ENSG00000176444|P49760-2|CLK2;ENST00000476983.5_1_1:155238132-155243105:-|nuORF;ENST00000484699.1_1_1:155239218-155239476:-|nuORF nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7507934570312 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 61.145 1 58.211 57.711 58.711 -2.9333 0 0 0 0.1761 1 11779 11779 26.884 6.43 1 8186 6468 5131 5135 8412 8412 -0.09866428781083414 DYRHSYEYQ 9 Unmodified _DYRHSYEYQ_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;nc|ENSG00000176444|P49760-2|CLK2;ENST00000476983.5_1_1:155238132-155243105:-|nuORF;ENST00000484699.1_1_1:155239218-155239476:-|nuORF nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.765869140625 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 61.255 1 58.293 57.793 58.793 -2.9614 0 0 0 0.16777 1 11803 11803 4.7159 3.871 1 8187 6468 5131 5135 8413 8413 -0.09866428781083414 DYRHSYEYQ 9 Unmodified _DYRHSYEYQ_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;nc|ENSG00000176444|P49760-2|CLK2;ENST00000476983.5_1_1:155238132-155243105:-|nuORF;ENST00000484699.1_1_1:155239218-155239476:-|nuORF nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7681884765625 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 61.025 1 57.794 57.294 58.294 -3.231 0 0 0 0.17505 1 11419 11419 0.40827 0.40231 1 8188 6468 5131 5135 8414 8414 -0.09866428781083414 DYSENKRLQ 9 Unmodified _DYSENKRLQ_ 0 0 0 tr|U7SYQ4|U7SYQ4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00873PE=4SV=1 tr|U7SYQ4|U7SYQ4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00873PE=4SV=1 tr|U7SYQ4|U7SYQ4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00873PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3355712890625 2 576.785827 1151.5571 0.24874 0.00014347 2.1316 0.0012295 2.3803 0.0013729 576.788053553335 54.091 0.67501 54.091 53.886 54.561 0 20 18 2 0 0 0 0.54354 1 10351 10351 16.942 0.79319 1 2634900 8189 26282 5132 5136 8415 8415 -0.012615518843858808 DYSGNPLVP 9 Unmodified _DYSGNPLVP_ 0 0 0 REV__CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant REV__CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2352600097656 2 481.234907 960.455261 -0.31506 -0.00015162 -0.18315 -8.8136E-05 -0.49821 -0.00023975 481.2349099236572 62.798 1.1825 62.798 61.939 63.121 0 56 33 3 0 0 0 0.55979 1 12033 12033 15.847 2.3393 1 3142000 + 8190 13400 5133 5137 8416 8416 -0.02654798236130773 DYSGNPLVP 9 Unmodified _DYSGNPLVP_ 0 0 0 REV__CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant REV__CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2320251464844 2 481.234907 960.455261 0.03111 1.4971E-05 -0.11416 -5.4938E-05 -0.08305 -3.9967E-05 481.2348417862514 66.121 0.48783 63.074 62.776 63.264 -3.047 23 13 2 0 0 0 0.54354 1 12754 12754 16.942 2.3606 1 1045000 + 8191 13400 5133 5137 8417 8417 -0.02654798236130773 DYSQEDYATGY 11 Unmodified _DYSQEDYATGY_ 0 0 0 REV__ENSG00000131773|ENST00000355849|KHDRBS3 REV__ENSG00000131773|ENST00000355849|KHDRBS3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 656.2664184570312 2 656.254222 1310.49389 NaN NaN NaN NaN NaN NaN NaN 56.479 1 53.585 53.085 54.085 -2.8944 0 0 0 0.224 1 10822 10822 13.042 2.2185 1 + 8192 16089 5134 5138 8418 8418 -0.1489358218293546 DYSSKELVR 9 Unmodified _DYSSKELVR_ 0 0 0 REV__nc|ENSG00000125864|Q12934-3|BFSP1 REV__nc|ENSG00000125864|Q12934-3|BFSP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 366.1908874511719 3 366.192623 1095.55604 NaN NaN NaN NaN NaN NaN NaN 86.857 1 83.128 82.628 83.628 -3.7289 0 0 0 0.23508 1 16615 16615 4.5289 1.7937 1 + 8193 15839 5135 5139 8419 8419 0.012082337467290927 DYSVTYGHCP 10 Unmodified _DYSVTYGHCP_ 0 0 0 ENSG00000108582|ENST00000225719|CPD;CPD|p.E1177D|1|0.37|ENSG00000108582|chr17:30461212-30461212|A/C|missense_variant;nc|ENSG00000108582|O75976-2|CPD ENSG00000108582|ENST00000225719|CPD ENSG00000108582|ENST00000225719|CPD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21697998046875 3 381.158813 1140.45461 0.067891 2.5877E-05 0.66082 0.00025188 0.72872 0.00027776 381.1589869181731 138.15 0.66521 133.23 132.9 133.56 -4.9215 37 18 3 0 0 0 0.89825 1 26550 26550 12.175 5.969 1 3297500 8194 2487 5136 5140 8420 8420 -0.10999960947492582 DYSVTYGHCP 10 Unmodified _DYSVTYGHCP_ 0 0 0 ENSG00000108582|ENST00000225719|CPD;CPD|p.E1177D|1|0.37|ENSG00000108582|chr17:30461212-30461212|A/C|missense_variant;nc|ENSG00000108582|O75976-2|CPD ENSG00000108582|ENST00000225719|CPD ENSG00000108582|ENST00000225719|CPD MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 381.158813 1140.45461 -0.13168 -5.0192E-05 1.0106 0.00038519 0.87891 0.000335 381.1591583491964 133.43 0.55518 133.43 133 133.56 0 0.13869 0.00024331 NaN 12.175 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2722500 8195 2487 5136 5140 -0.10999960947492582 DYSVTYGHCP 10 Unmodified _DYSVTYGHCP_ 0 0 0 ENSG00000108582|ENST00000225719|CPD;CPD|p.E1177D|1|0.37|ENSG00000108582|chr17:30461212-30461212|A/C|missense_variant;nc|ENSG00000108582|O75976-2|CPD ENSG00000108582|ENST00000225719|CPD ENSG00000108582|ENST00000225719|CPD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 381.158813 1140.45461 -0.20031 -7.6349E-05 0.67298 0.00025651 0.47268 0.00018016 381.15914042962146 137.85 0.65979 133.21 133.01 133.67 -4.6413 -0.076832 -0.00014273 NaN 12.175 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2145900 8196 2487 5136 5140 -0.10999960947492582 DYVAWISVL 9 Unmodified _DYVAWISVL_ 0 0 0 ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1 ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2835693359375 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 113.73 1 113.73 113.23 114.23 0 0 0 0 0.20628 1 22363 22363 21.747 4.8044 1 8197 227 5137 5141 8421 8421 0.024552247287601858 DYVLMENYTP 10 Unmodified _DYVLMENYTP_ 0 0 0 REV__ENSG00000133056|ENST00000684373|PIK3C2B REV__ENSG00000133056|ENST00000684373|PIK3C2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.781005859375 2 622.778822 1243.54309 NaN NaN NaN NaN NaN NaN NaN 95.365 1 91.484 90.984 91.984 -3.881 0 0 0 0.21796 1 18296 18296 24.991 4.5764 1 + 8198 16152 5138 5142 8422 8422 -0.06893965427684634 DYVRYYWVFLF 11 Unmodified _DYVRYYWVFLF_ 0 0 0 REV__ENSG00000165168|ENST00000378588|CYBB REV__ENSG00000165168|ENST00000378588|CYBB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.67919921875 3 524.262489 1569.76564 0.52423 0.00027483 3.2445 0.001701 3.7687 0.0019758 524.2645588249819 163.54 0.17278 158.48 158.32 158.49 -5.0648 5 4 2 0 0 0 0.96224 1 31826 31826 0.094841 0.011491 1 9728800 + 8199 17743 5139 5143 8423 8423 0.0035447669984023378 DYWSNYEFH 9 Unmodified _DYWSNYEFH_ 0 0 0 ENSG00000133858|ENST00000378743|ZFC3H1;nc|ENSG00000133858|O60293-2|ZFC3H1 ENSG00000133858|ENST00000378743|ZFC3H1 ENSG00000133858|ENST00000378743|ZFC3H1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7506713867188 2 630.751453 1259.48835 NaN NaN NaN NaN NaN NaN NaN 4.7659 1 4.1397 3.6397 4.6397 -0.62626 0 0 0 0.23508 1 150 150 0.45834 0 1 8200 3818 5140 5144 8424 8424 -0.1310121618409994 DYYFVFEDY 9 Unmodified _DYYFVFEDY_ 0 0 0 nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19;ENST00000502873.5_1_4:26585743-26755545:+|nuORF nc|ENSG00000109680|Q8N5T2-2|TBC1D19 nc|ENSG00000109680|Q8N5T2-2|TBC1D19 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7667846679688 2 630.758412 1259.50227 NaN NaN NaN NaN NaN NaN NaN 114.39 1 109.83 109.33 110.33 -4.555 0 0 0 0.19632 1 21964 21964 0.40827 0 1 8201 2537 5141 5145 8425 8425 -0.11709983475657282 DYYKRYRVRSY 11 Unmodified _DYYKRYRVRSY_ 0 0 0 ENSG00000173914|ENST00000310046|RBM4B ENSG00000173914|ENST00000310046|RBM4B ENSG00000173914|ENST00000310046|RBM4B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6785888671875 3 523.603797 1567.78956 NaN NaN NaN NaN NaN NaN NaN 111.31 1 107.08 106.58 107.58 -4.2289 0 0 0 0.23698 1 21423 21423 1.2148 0.76031 1 8202 6316 5142 5146 8426 8426 0.028377101862133713 EAAAAAAEVI 10 Unmodified _EAAAAAAEVI_ 0 0 0 ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2347717285156 2 458.242732 914.470912 0.30321 0.00013895 0.49559 0.0002271 0.7988 0.00036605 458.2430133777562 28.388 1.8803 28.388 27.801 29.681 0 155 53 5 0 0 0 0.26497 1 5288 5288 39.95 15.929 1 86017000 8203 6839 5143 5147 8427 8427 0.010254882808908405 EAAAAAAEVI 10 Unmodified _EAAAAAAEVI_ 0 0 0 ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.241455078125 2 458.242732 914.470912 0.54107 0.00024794 -0.16533 -7.5762E-05 0.37574 0.00017218 458.2426248242289 30.327 1.7832 28.252 27.556 29.339 -2.0743 150 50 5 0 0 0 0.13946 1 5408 5408 49.933 19.296 1 61841000 8204 6839 5143 5147 8428 8428 0.010254882808908405 EAAAAAEAAAA 11 Unmodified _EAAAAAEAAAA_ 0 0 0 ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.24200439453125 2 458.722164 915.429775 0.20843 9.5611E-05 0.045255 2.076E-05 0.25368 0.00011637 458.72213962289163 31.463 0.87567 29.232 28.99 29.866 -2.2305 34 24 2 0 0 0 0.048039 1 5735 5735 88.954 10.226 1 1885300 8205 6839 5144 5148 8429 8429 -0.031322727585916255 EAAAAAEAAAA 11 Unmodified _EAAAAAEAAAA_ 0 0 0 ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2337951660156 2 458.722164 915.429775 0.13062 5.9916E-05 -0.04073 -1.8684E-05 0.089885 4.1232E-05 458.72211654126966 34.633 0.52459 32.381 32.184 32.708 -2.2527 20 14 2 0 0 0 0.86301 1 6060 6060 11.495 0 1 679740 8206 6839 5144 5148 8430 8430 -0.031322727585916255 EAAAAAEAAAA 11 Unmodified _EAAAAAEAAAA_ 0 0 0 ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2235107421875 2 458.722164 915.429775 0.48894 0.00022429 -0.30518 -0.00013999 0.18377 8.4299E-05 458.72199314333676 31.525 0.73522 29.376 28.987 29.722 -2.1483 33 20 2 0 0 0 0.53193 1 5479 5479 38.176 0 1 1421300 8207 6839 5144 5148 8431 8431 -0.031322727585916255 EAAAAAEAAAA 11 Unmodified _EAAAAAEAAAA_ 0 0 0 ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.722164 915.429775 -0.29353 -0.00013465 0.18189 8.3438E-05 -0.11164 -5.1213E-05 458.72227969218824 34.745 0.48447 32.428 32.19 32.675 -2.3175 0.023377 9.4001E-05 NaN 11.495 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 646320 8208 6839 5144 5148 -0.031322727585916255 EAAAAAEAAAA 11 Unmodified _EAAAAAEAAAA_ 0 0 0 ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A ENSG00000183304|ENST00000381003|FAM9A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.722164 915.429775 0.24241 0.0001112 0.098366 4.5123E-05 0.34078 0.00015632 458.7221689626591 31.379 0.74139 29.353 29.057 29.798 -2.0264 0.0055786 0.0001854 NaN 88.954 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2116100 8209 6839 5144 5148 -0.031322727585916255 EAAAAAVV 8 Unmodified _EAAAAAVV_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF;REV__MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 702.3702392578125 1 701.382831 700.375555 0.73722 0.00051707 -0.18545 -0.00013007 0.55177 0.000387 701.3825794371013 46 0.79696 43.159 42.724 43.521 -2.8409 35 22 2 0 0 0 0.27274 1 8637 8637 38.151 0 1 2183300 + 8210 20205;18072 5145 5149 8432 8432 0.013381798805198741 EAAAAAVV 8 Unmodified _EAAAAAVV_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF;REV__MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 701.382831 700.375555 0.68724 0.00048202 -0.20996 -0.00014726 0.47728 0.00033476 701.3827304607399 43.551 0.83066 43.551 43.087 43.917 0 0.20847 -0.00010328 NaN 38.151 33 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1932400 + 8211 20205;18072 5145 5149 0.013381798805198741 EAAAAAVV 8 Unmodified _EAAAAAVV_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF;REV__MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 701.382831 700.375555 0.73722 0.00051707 -0.18545 -0.00013007 0.55177 0.000387 701.3825794371013 46 0.79696 43.159 42.724 43.521 -2.8409 -0.18371 -8.6091E-05 NaN 38.151 35 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2183300 + 8212 20205;18072 5145 5149 0.013381798805198741 EAAAAAVV 8 Unmodified _EAAAAAVV_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF;REV__MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 701.382831 700.375555 0.22311 0.00015648 -0.056927 -3.9928E-05 0.16618 0.00011655 701.3828010993884 46.137 0.7235 43.272 42.934 43.657 -2.8653 -0.070999 4.0554E-06 NaN 38.151 33 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2212400 + 8213 20205;18072 5145 5149 0.013381798805198741 EAAAAAVV 8 Unmodified _EAAAAAVV_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF;REV__MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 701.382831 700.375555 0.11262 7.8991E-05 0.36143 0.0002535 0.47405 0.00033249 701.3829306886197 46.255 0.75349 43.389 42.893 43.646 -2.8666 0.046241 0.00029748 NaN 38.151 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2064200 + 8214 20205;18072 5145 5149 0.013381798805198741 EAAAAAVVA 9 Unmodified _EAAAAAVVA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.71636962890625 2 386.713611 771.412668 0.097693 3.7779E-05 -0.66266 -0.00025626 -0.56496 -0.00021848 386.7133032462909 41.565 1.2573 41.565 41.129 42.387 0 78 35 3 0 0 0 0.054622 4 7729 7729;7731;7781;7823 42.095 0 1 12979000 + 8215 20205 5146 5150 8433;8434;8435;8436 8433 0.017818514262785357 EAAAAAVVA 9 Unmodified _EAAAAAVVA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 386.2270202636719 2 386.713611 771.412668 0.097693 3.7779E-05 -0.66266 -0.00025626 -0.56496 -0.00021848 386.7133032462909 41.565 1.2573 41.565 41.129 42.387 0 78 35 3 0 0 0 0.067672 1 7820 7820 31.728 0 1 12979000 + 8216 20205 5146 5150 8437 8437 0.017818514262785357 EAAAAAVVA 9 Unmodified _EAAAAAVVA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7158203125 2 386.713611 771.412668 -0.26971 -0.0001043 -0.23076 -8.9237E-05 -0.50047 -0.00019354 386.7134736454173 44.037 1.4659 41.247 40.771 42.237 -2.79 108 41 4 0 0 0 0.054622 7 8353 8211;8257;8260;8308;8310;8353;8355 57.471 0 1 42503000 + 8217 20205 5146 5150 8438;8439;8440;8441;8442;8443;8444 8443 0.017818514262785357 EAAAAAVVA 9 Unmodified _EAAAAAVVA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.71630859375 2 386.713611 771.412668 -0.040875 -1.5807E-05 -0.39853 -0.00015412 -0.43941 -0.00016992 386.7133998034794 44.026 1.3583 41.26 40.867 42.225 -2.7661 98 38 3 0 0 0 0.039907 7 8026 7930;7977;7981;8026;8028;8077;8081 57.471 0 1 22933000 + 8218 20205 5146 5150 8445;8446;8447;8448;8449;8450;8451 8448 0.017818514262785357 EAAAAAVVA 9 Unmodified _EAAAAAVVA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7156066894531 2 386.713611 771.412668 -0.7208 -0.00027874 -0.032693 -1.2643E-05 -0.75349 -0.00029139 386.71354069518117 44.09 1.4351 41.343 40.905 42.34 -2.7475 99 40 4 0 0 0 0.054622 5 8021 7937;7974;7976;8021;8024 57.471 0 1 20855000 + 8219 20205 5146 5150 8452;8453;8454;8455;8456 8455 0.017818514262785357 EAAAAAVVA 9 Unmodified _EAAAAAVVA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 386.713611 771.412668 -0.26971 -0.0001043 -0.23076 -8.9237E-05 -0.50047 -0.00019354 386.7134736454173 44.037 1.4659 41.247 40.771 42.237 -2.79 -0.10645 7.3873E-05 NaN 26.995 108 41 4 NaN NaN NaN NaN 0 NaN NaN 0 42503000 + 8220 20205 5146 5150 0.017818514262785357 EAAAAAVVA 9 Unmodified _EAAAAAVVA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 386.713611 771.412668 -0.040875 -1.5807E-05 -0.39853 -0.00015412 -0.43941 -0.00016992 386.7133998034794 44.026 1.3583 41.26 40.867 42.225 -2.7661 -0.094103 -5.5888E-05 NaN 26.995 98 38 3 NaN NaN NaN NaN 0 NaN NaN 0 22933000 + 8221 20205 5146 5150 0.017818514262785357 EAAAAAVVA 9 Unmodified _EAAAAAVVA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 386.713611 771.412668 -0.7208 -0.00027874 -0.032693 -1.2643E-05 -0.75349 -0.00029139 386.71354069518117 44.09 1.4351 41.343 40.905 42.34 -2.7475 -0.01113 0.00022706 NaN 26.995 99 40 4 NaN NaN NaN NaN 0 NaN NaN 0 20855000 + 8222 20205 5146 5150 0.017818514262785357 EAAAAAVVAA 10 Unmodified _EAAAAAVVAA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3846435546875 1 843.457059 842.449782 0.17762 0.00014981 0.20505 0.00017295 0.38267 0.00032276 843.4571785928613 52.77 1.4927 49.886 49.449 50.942 -2.8837 110 42 4 0 0 0 0.087069 2 10162 10162;10216 65.235 0 1 146240000 + 8223 20205 5147 5151 8457;8458 8457 0.022255229720371972 EAAAAAVVAA 10 Unmodified _EAAAAAVVAA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3782348632812 1 843.457059 842.449782 0.11935 0.00010066 0.23692 0.00019983 0.35626 0.00030049 843.4572158926243 53.047 1.4091 49.952 49.484 50.893 -3.0954 132 40 5 0 0 0 0.040892 1 9905 9905 85.272 0 1 138650000 + 8224 20205 5147 5151 8459 8459 0.022255229720371972 EAAAAAVVAA 10 Unmodified _EAAAAAVVAA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 843.457059 842.449782 0.17762 0.00014981 0.20505 0.00017295 0.38267 0.00032276 843.4571785928613 52.77 1.4927 49.886 49.449 50.942 -2.8837 -0.031462 2.8486E-05 NaN 85.272 110 42 4 NaN NaN NaN NaN 0 NaN NaN 0 146240000 + 8225 20205 5147 5151 0.022255229720371972 EAAAAAVVAA 10 Unmodified _EAAAAAVVAA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 843.457059 842.449782 0.28612 0.00024133 0.10877 9.1739E-05 0.39489 0.00033307 843.4570988676647 53.003 1.4385 49.915 49.514 50.952 -3.0876 -0.0025421 -5.2725E-05 NaN 85.272 114 40 4 NaN NaN NaN NaN 0 NaN NaN 0 148170000 + 8226 20205 5147 5151 0.022255229720371972 EAAAAAVVAA 10 Unmodified _EAAAAAVVAA_ 0 0 0 REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 843.457059 842.449782 0.11935 0.00010066 0.23692 0.00019983 0.35626 0.00030049 843.4572158926243 53.047 1.4091 49.952 49.484 50.893 -3.0954 0.034004 5.5364E-05 NaN 85.272 132 40 5 NaN NaN NaN NaN 0 NaN NaN 0 138650000 + 8227 20205 5147 5151 0.022255229720371972 EAAAASTMAV 10 Unmodified _EAAAASTMAV_ 0 0 0 nc|ENSG00000167074|Q10587-2|TEF;ENSG00000167074|ENST00000266304|TEF nc|ENSG00000167074|Q10587-2|TEF nc|ENSG00000167074|Q10587-2|TEF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5282287597656 2 461.220943 920.427332 NaN NaN NaN NaN NaN NaN NaN 95.412 1 91.221 90.721 91.721 -4.1911 0 0 0 2.8426 1 18208 18208 11.57 5.0828 1 8228 5779 5148 5152 8460 8460 -0.03606444487877525 EAAAAVDVKTW 11 Unmodified _EAAAAVDVKTW_ 0 0 0 ENSG00000066084|ENST00000301180|DIP2B;DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7161560058594 3 387.536389 1159.58734 -0.26473 -0.00010259 -1.9798 -0.00076723 -2.2445 -0.00086983 387.8697501065623 44.218 0.35137 41.428 41.254 41.605 -2.79 11 9 2 0 0 0 0.94506 1 8310 8310 12.856 8.7393 1 508710 8229 1368 5149 5153 8461 8461 0.013928067807910338 EAAADTLAPA 10 Unmodified _EAAADTLAPA_ 0 0 0 REV__ENSG00000120071|ENST00000432791|KANSL1;REV__KANSL1|p.K267Sfs*12|1|0.22|ENSG00000120071|chr17:46171344-46171344|T/-|frameshift_variant REV__ENSG00000120071|ENST00000432791|KANSL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24798583984375 2 465.232364 928.450176 0.18221 8.4768E-05 -0.065056 -3.0266E-05 0.11715 5.4502E-05 465.23239644288446 25.178 0.44428 25.178 24.947 25.391 0 18 12 2 0 0 0 0.43819 1 4366 4366 1.9275 0 1 536380 + 8230 15609;23694 5150 5154 8462 8462 -0.016911020987663505 EAAAEQAQSC 10 Unmodified _EAAAEQAQSC_ 0 0 0 REV__ENST00000530342.2_1_11:67007518-67007740:+|nuORF REV__ENST00000530342.2_1_11:67007518-67007740:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.4578857421875 3 336.474801 1006.40257 NaN NaN NaN NaN NaN NaN NaN 54.342 1 51.204 50.704 51.704 -3.1377 0 0 0 2.8426 1 10054 10054 0.26539 0 1 + 8231 22753 5151 5155 8463 8463 -0.1003712436125852 EAAAGALLAS 10 Unmodified _EAAAGALLAS_ 0 0 0 LANCL2|p.S379Kfs*12|1|0.09|ENSG00000132434|chr7:55425378-55425379|-/TAAAGACCTG|frameshift_variant;ENSG00000132434|ENST00000254770|LANCL2 LANCL2|p.S379Kfs*12|1|0.09|ENSG00000132434|chr7:55425378-55425379|-/TAAAGACCTG|frameshift_variant LANCL2|p.S379Kfs*12|1|0.09|ENSG00000132434|chr7:55425378-55425379|-/TAAAGACCTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2297668457031 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 81.941 1 78.101 77.601 78.601 -3.8392 0 0 0 2.8426 1 15561 15561 3.104 0 1 8232 3725 5152 5156 8464 8464 0.01901505626483413 EAAAGLKQAA 10 Unmodified _EAAAGLKQAA_ 0 0 0 TLN1|p.N1250K|1|0.39|ENSG00000137076|chr9:35711724-35711724|A/T|missense_variant TLN1|p.N1250K|1|0.39|ENSG00000137076|chr9:35711724-35711724|A/T|missense_variant TLN1|p.N1250K|1|0.39|ENSG00000137076|chr9:35711724-35711724|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2403259277344 2 465.256174 928.497795 0.34697 0.00016143 -0.46247 -0.00021517 -0.1155 -5.3737E-05 465.2559334161572 42.386 0.59082 42.386 42.048 42.639 0 36 16 3 0 0 0 0.5575 1 7863 7863 21.537 5.3879 1 3134300 8233 25854 5153 5157 8465 8465 0.030685968920806772 EAAALKKALI 10 Unmodified _EAAALKKALI_ 0 0 0 REV__ENSG00000231989|ENST00000522232|PPP1R2B REV__ENSG00000231989|ENST00000522232|PPP1R2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 513.8834228515625 2 514.329142 1026.64373 -0.11914 -6.1278E-05 0.39002 0.0002006 0.27088 0.00013932 514.3293094053744 65.168 0.66234 65.168 64.786 65.448 0 32 18 2 0 0 0 0.83242 1 12619 12619 14.838 0 1 7487200 + 8234 19747 5154 5158 8466 8466 0.13147479408144136 EAAAPGARM 9 Unmodified _EAAAPGARM_ 0 0 0 REV__ENST00000561781.1_1_16:675821-676004:+|nuORF REV__ENST00000561781.1_1_16:675821-676004:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21661376953125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 79.202 1 75.691 75.191 76.191 -3.5102 0 0 0 0.20628 1 15469 15469 21.747 2.3076 1 + 8235 23059 5155 5159 8467 8467 -0.023875877025943737 EAAAPRPRR 9 Unmodified _EAAAPRPRR_ 0 0 0 REV__ENST00000559287.5_1_14:24701873-24701948:+|nuORF REV__ENST00000559287.5_1_14:24701873-24701948:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.79962158203125 3 341.865063 1022.57336 NaN NaN NaN NaN NaN NaN NaN 49.822 1 49.822 49.322 50.322 0 0 0 0 0.23508 1 9423 9423 7.609 2.2062 1 + 8236 23029 5156 5160 8468 8468 0.06297618863038679 EAAAQPWTGR 10 Unmodified _EAAAQPWTGR_ 0 0 0 ENST00000395827.5_2_22:50629058-50632804:+|nuORF ENST00000395827.5_2_22:50629058-50632804:+|nuORF ENST00000395827.5_2_22:50629058-50632804:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77197265625 2 543.76998 1085.52541 NaN NaN NaN NaN NaN NaN NaN 77.931 1 74.272 73.772 74.772 -3.6588 0 0 0 0.22588 1 14843 14843 6.2058 0 1 8237 9434 5157 5161 8469 8469 -0.013934998476770488 EAAARIRE 8 Unmodified _EAAARIRE_ 0 0 0 ENST00000578033.1_1_17:7127960-7128413:+|nuORF;ENST00000578319.5_1_17:7127738-7128413:+|nuORF;nc|ENSG00000072778|P49748-2|ACADVL;ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL ENST00000578033.1_1_17:7127960-7128413:+|nuORF ENST00000578033.1_1_17:7127960-7128413:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2386169433594 2 458.253966 914.493378 NaN NaN NaN NaN NaN NaN NaN 71.38 1 67.913 67.413 68.413 -3.467 0 0 0 0.21039 1 13528 13528 16.942 0 1 8238 1473 5158 5162 8470 8470 0.03271132469183158 EAAATQLGL 9 Unmodified _EAAATQLGL_ 0 0 0 ENST00000495483.5_2_1:161137139-161146869:+|nuORF;ENSG00000143224|ENST00000367999|PPOX ENST00000495483.5_2_1:161137139-161146869:+|nuORF ENST00000495483.5_2_1:161137139-161146869:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23553466796875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 79.04 1 75.364 74.864 75.864 -3.676 0 0 0 0.22251 1 15055 15055 16.942 0 1 8239 4465 5159 5163 8471 8471 0.019015056264720442 EAAAVVGEK 9 Unmodified _EAAAVVGEK_ 0 0 0 REV__nc|ENSG00000145335|P37840-2|SNCA REV__nc|ENSG00000145335|P37840-2|SNCA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2281799316406 2 437.23745 872.460347 -0.13187 -5.7657E-05 0.34636 0.00015144 0.21449 9.3783E-05 437.2376488576376 93.452 1.033 89.461 88.968 90.001 -3.9907 66 29 3 0 0 0 0.31728 1 18232 18232 1.6919 0 1 18021000 + 8240 14313 5160 5164 8472 8472 0.01901505626483413 EAACEMLR 8 Unmodified _EAACEMLR_ 0 0 0 nc|ENSG00000145284|Q86SK9-2|SCD5 nc|ENSG00000145284|Q86SK9-2|SCD5 nc|ENSG00000145284|Q86SK9-2|SCD5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5257568359375 2 461.709688 921.404823 0.035205 1.6255E-05 0.89148 0.00041161 0.92669 0.00042786 461.710037064049 58.766 1.3446 55.514 54.927 56.271 -3.2517 86 37 3 0 0 0 0.73936 1 11066 11066 8.5933 8.5933 1 19289000 8241 12366 5161 5165 8473 8473 -0.05902367157136723 EAACGRCENE 10 Unmodified _EAACGRCENE_ 0 0 0 SLC2A13|p.W480C|1|0.35|ENSG00000151229|chr12:39830108-39830108|C/A|missense_variant SLC2A13|p.W480C|1|0.35|ENSG00000151229|chr12:39830108-39830108|C/A|missense_variant SLC2A13|p.W480C|1|0.35|ENSG00000151229|chr12:39830108-39830108|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.26416015625 2 541.205498 1080.39644 NaN NaN NaN NaN NaN NaN NaN 76.387 1 76.387 75.887 76.887 0 0 0 0 0.22588 1 14844 14844 5.7319 0 1 8242 25678 5162 5166 8474 8474 -0.14053965864422935 EAACIPYPV 9 Unmodified _EAACIPYPV_ 0 0 0 REV__nc|ENSG00000120949|P28908-3|TNFRSF8 REV__nc|ENSG00000120949|P28908-3|TNFRSF8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.776611328125 2 481.736228 961.457904 NaN NaN NaN NaN NaN NaN NaN 53.809 1 53.809 53.309 54.309 0 0 0 0 0.1761 1 10252 10252 26.884 5.137 1 + 8243 15641 5163 5167 8475 8475 -0.02436666102835261 EAACRPWDP 9 Unmodified _EAACRPWDP_ 0 0 0 ENST00000406721.7_1_9:139635361-139636622:-|nuORF ENST00000406721.7_1_9:139635361-139636622:-|nuORF ENST00000406721.7_1_9:139635361-139636622:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7008666992188 2 522.732009 1043.44946 -0.3992 -0.00020867 0.39531 0.00020664 -0.0038811 -2.0288E-06 522.732223128454 52.589 1.1109 49.706 49.102 50.213 -2.8837 75 31 4 0 0 0 0.64382 1 9893 9893 10.074 2.1638 1 34824000 8244 9545 5164 5168 8476 8476 -0.0705222001945458 EAADDDDDD 9 Unmodified _EAADDDDDD_ 0 0 0 REV__ENST00000588366.1_1_18:46005350-46005533:+|nuORF REV__ENST00000588366.1_1_18:46005350-46005533:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2584228515625 2 490.651798 979.289044 NaN NaN NaN NaN NaN NaN NaN 38.646 1 36.204 35.704 36.704 -2.4419 0 0 0 0.23508 1 6883 6883 7.9102 2.1497 1 + 8245 15337 5165 5169 8477 8477 -0.2014294099332119 EAADDDDDDDG 11 Unmodified _EAADDDDDDDG_ 0 0 0 REV__ENST00000588366.1_1_18:46005350-46005533:+|nuORF REV__ENST00000588366.1_1_18:46005350-46005533:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3309936523438 2 576.676002 1151.33745 NaN NaN NaN NaN NaN NaN NaN 88.365 1 88.365 87.865 88.865 0 0 0 0 0.23698 1 17247 17247 1.1933 0.59184 1 + 8246 15337 5166 5170 8478 8478 -0.2321649214406989 EAADITITQ 9 Unmodified _EAADITITQ_ 0 0 0 tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1 tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1 tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.245361328125 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 22.568 1 20.78 20.28 21.28 -1.7886 0 0 0 0.1963 1 3590 3590 0.029283 0 1 8247 26131 5167 5171 8479 8479 -0.0054283292729451205 EAADKFGQI 9 Unmodified _EAADKFGQI_ 0 0 0 REV__nc|ENSG00000086475|P49903-2|SEPHS1 REV__nc|ENSG00000086475|P49903-2|SEPHS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2556457519531 2 489.748182 977.481811 -0.055825 -2.734E-05 0.23618 0.00011567 0.18036 8.8329E-05 489.7482522772279 38.314 0.59158 35.909 35.674 36.266 -2.4049 30 16 3 0 0 0 0.13708 1 6775 6775 46.021 15.384 1 3726800 + 8248 14484 5168 5172 8480 8480 -0.007831093447975945 EAADMEEY 8 Unmodified _EAADMEEY_ 0 0 0 nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF nc|ENSG00000144848|Q9NT62-2|ATG3 nc|ENSG00000144848|Q9NT62-2|ATG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7411804199219 2 479.17894 956.343328 NaN NaN NaN NaN NaN NaN NaN 68.49 1 64.954 64.454 65.454 -3.5362 0 0 0 0.21486 1 12874 12874 9.3474 3.587 1 8249 4582 5169 5173 8481 8481 -0.13659020375439468 EAAEASGS 8 Unmodified _EAAEASGS_ 0 0 0 REV__ENSG00000176410|ENST00000395176|DNAJC30 REV__ENSG00000176410|ENST00000395176|DNAJC30 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1532897949219 2 361.153583 720.292613 NaN NaN NaN NaN NaN NaN NaN 97.647 1 93.549 93.049 94.049 -4.0978 0 0 0 0.22684 1 19164 19164 2.643 0 1 + 8250 18508 5170 5174 8482 8482 -0.0787218163812895 EAAEEGSEEE 10 Unmodified _EAAEEGSEEE_ 0 0 0 REV__ENST00000542568.1_1_12:121017123-121017228:-|nuORF REV__ENST00000542568.1_1_12:121017123-121017228:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.279541015625 2 540.204198 1078.39384 0.046851 2.5309E-05 1.2789 0.00069085 1.3257 0.00071616 540.204939852188 93.142 1.4261 93.142 92.886 94.312 0 128 40 4 0 0 0 0.38778 1 18267 18267 12.228 0 1 132270000 + 8251 17914 5171 5175 8483 8483 -0.14221819516751566 EAAEERRKY 9 Unmodified _EAAEERRKY_ 0 0 0 nc|ENSG00000015592|Q9H169-3|STMN4;nc|ENSG00000015592|Q9H169|STMN4;nc|ENSG00000015592|Q9H169-4|STMN4;ENSG00000015592|ENST00000350889|STMN4 nc|ENSG00000015592|Q9H169-3|STMN4 nc|ENSG00000015592|Q9H169-3|STMN4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33544921875 2 576.293819 1150.57309 NaN NaN NaN NaN NaN NaN NaN 23.08 1 21.292 20.792 21.792 -1.7886 0 0 0 0.23508 1 3696 3696 3.9444 0.3479 1 8252 1114 5172 5176 8484 8484 0.003821543525418747 EAAEHDWVS 9 Unmodified _EAAEHDWVS_ 0 0 0 REV__ENST00000258341.4_1_1:183094003-183094580:+|nuORF REV__ENST00000258341.4_1_1:183094003-183094580:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27197265625 2 522.225071 1042.43559 NaN NaN NaN NaN NaN NaN NaN 24.465 1 24.465 23.965 24.965 0 0 0 0 0.19711 1 4217 4217 10.899 8.9715 1 + 8253 20148 5173 5177 8485 8485 -0.0839317424690762 EAAELGAGVG 10 Unmodified _EAAELGAGVG_ 0 0 0 REV__ENST00000485723.1_1_7:75283957-75368238:-|nuORF REV__ENST00000485723.1_1_7:75283957-75368238:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2290954589844 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 42.111 1 39.392 38.892 39.892 -2.7191 0 0 0 0.22588 1 7871 7871 13.042 0.51092 1 + 8254 15904 5174 5178 8486 8486 -0.017353712702174562 EAAEMLLAN 9 Unmodified _EAAEMLLAN_ 0 0 0 ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA ENSG00000137996|ENST00000370128|RTCA ENSG00000137996|ENST00000370128|RTCA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23736572265625 2 481.236593 960.458632 0.41311 0.00019881 -0.65599 -0.00031569 -0.24287 -0.00011688 481.23655509008177 89.716 1.1645 85.671 84.964 86.128 -4.0443 59 32 3 0 0 0 0.25702 2 17131 17131;17145 34.102 12.356 1 971570 8255 4135 5175 5179 8487;8488 8487 -0.02317871453783482 EAAEPRAKG 9 Unmodified _EAAEPRAKG_ 0 0 0 REV__CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant REV__CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2411193847656 2 464.745973 927.477394 0.27312 0.00012693 1.6645 0.00077355 1.9376 0.00090048 464.74553352787336 39.536 0.83239 39.536 39.166 39.998 0 49 23 3 0 0 0 0.35724 1 7411 7411 1.6919 0.8167 1 3642100 + 8256 13234 5176 5180 8489 8489 0.010754262322848263 EAAEQLGKN 9 Unmodified _EAAEQLGKN_ 0 0 0 nc|ENSG00000138698|P52306-6|RAP1GDS1;nc|ENSG00000138698|P52306-2|RAP1GDS1;nc|ENSG00000138698|P52306-3|RAP1GDS1;nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1 nc|ENSG00000138698|P52306-6|RAP1GDS1 nc|ENSG00000138698|P52306-6|RAP1GDS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2328186035156 2 480.243264 958.471974 0.41724 0.00020038 -0.35128 -0.0001687 0.065962 3.1678E-05 480.2431539516656 32.259 0.48537 30.111 29.864 30.35 -2.1483 34 13 3 0 0 0 0.65387 1 5552 5552 9.3831 0 1 1904700 8257 4203 5177 5181 8490 8490 -0.008922973501739762 EAAEQWLD 8 Unmodified _EAAEQWLD_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2356872558594 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 48.858 1 45.989 45.489 46.489 -2.869 0 0 0 0.21452 1 9249 9249 13.508 0 1 8258 1518 5178 5182 8491 8491 -0.06291675132843011 EAAEQWLD 8 Unmodified _EAAEQWLD_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2522888183594 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 48.947 1 46.066 45.566 46.566 -2.8811 0 0 0 0.21452 1 9267 9267 13.508 0 1 8259 1518 5178 5182 8492 8492 -0.06291675132843011 EAAEQWLD 8 Unmodified _EAAEQWLD_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2424621582031 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 49.06 1 46.179 45.679 46.679 -2.8811 0 0 0 0.21452 1 9290 9290 13.508 0 1 8260 1518 5178 5182 8493 8493 -0.06291675132843011 EAAERQVL 8 Unmodified _EAAERQVL_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9|HEATR5A REV__nc|ENSG00000129493|Q86XA9|HEATR5A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23394775390625 2 458.248349 914.482145 0.35112 0.0001609 -0.17591 -8.0609E-05 0.17521 8.029E-05 458.2480115394669 34.571 0.4593 32.349 32.115 32.574 -2.2224 27 12 3 0 0 0 0.69713 1 6039 6039 14.838 0 1 1146500 + 8261 15965 5179 5183 8494 8494 0.021483103750597365 EAAERVLQ 8 Unmodified _EAAERVLQ_ 0 0 0 REV__tr|U7T5A1|U7T5A1_FUSNUGlyceroldehydratasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00495PE=4SV=1 REV__tr|U7T5A1|U7T5A1_FUSNUGlyceroldehydratasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00495PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.224609375 2 458.248349 914.482145 0.27115 0.00012425 0.60116 0.00027548 0.87231 0.00039973 458.24830280608495 32.449 0.66179 32.449 32.188 32.85 0 28 18 2 0 0 0 8448 1 5919 5919 9.544 0 1 1518300 + 8262 25408 5180 5184 8495 8495 0.021483103750597365 EAAEVLNQ 8 Unmodified _EAAEVLNQ_ 0 0 0 REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4 REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21832275390625 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 49.788 1 46.781 46.281 47.281 -3.0068 0 0 0 0.21486 1 9136 9136 12.532 1.7076 1 + 8263 17051 5181 5185 8496 8496 -0.017353712702401936 EAAEVLQN 8 Unmodified _EAAEVLQN_ 0 0 0 ENSG00000130725|ENST00000253023|UBE2M ENSG00000130725|ENST00000253023|UBE2M ENSG00000130725|ENST00000253023|UBE2M MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21942138671875 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 79.04 1 75.236 74.736 75.736 -3.8048 0 0 0 0.2074 1 14994 14994 19.439 0 1 8264 3630 5182 5186 8497 8497 -0.017353712702401936 EAAEVNLGQI 10 Unmodified _EAAEVNLGQI_ 0 0 0 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2733154296875 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 97.176 1 93.257 92.757 93.757 -3.9194 0 0 0 2.8426 1 18648 18648 3.104 0 1 + 8265 19404 5183 5187 8498 8498 0.009925448553985916 EAAFPMKY 8 Unmodified _EAAFPMKY_ 0 0 0 REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1 REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73187255859375 2 478.730946 955.447339 -0.028176 -1.3489E-05 0.63955 0.00030617 0.61138 0.00029268 478.73109773415285 24.32 0.48294 24.32 24.132 24.615 0 29 13 3 0 0 0 8448 1 4164 4164 0.25148 0 1 5062100 + 8266 16568 5184 5188 8499 8499 -0.03216648757256735 EAAGEAQKR 9 Unmodified _EAAGEAQKR_ 0 0 0 REV__ENSG00000078814|ENST00000262873|MYH7B REV__ENSG00000078814|ENST00000262873|MYH7B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2539978027344 2 480.24888 958.483208 -0.24411 -0.00011723 -1.8633 -0.00089486 -2.1074 -0.0010121 480.2471711653302 81.224 0.62312 77.536 77.142 77.765 -3.6879 36 17 3 0 0 0 0.40602 1 15464 15464 25.399 4.9457 1 1061900 + 8267 14388 5185 5189 8500 8500 0.002305247439608138 EAAGEAQKR 9 Unmodified _EAAGEAQKR_ 0 0 0 REV__ENSG00000078814|ENST00000262873|MYH7B REV__ENSG00000078814|ENST00000262873|MYH7B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.24888 958.483208 0.044514 2.1378E-05 -4.2831 -0.002057 -4.2386 -0.0020356 480.2468774838182 81.043 0.62785 77.486 77.095 77.723 -3.557 -0.024835 -0.00019426 NaN 25.399 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1087300 + 8268 14388 5185 5189 0.002305247439608138 EAAGEAQKR 9 Unmodified _EAAGEAQKR_ 0 0 0 REV__ENSG00000078814|ENST00000262873|MYH7B REV__ENSG00000078814|ENST00000262873|MYH7B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.24888 958.483208 -0.24411 -0.00011723 -1.8633 -0.00089486 -2.1074 -0.0010121 480.2471711653302 81.224 0.62312 77.536 77.142 77.765 -3.6879 0.024835 0.00213 NaN 25.399 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1061900 + 8269 14388 5185 5189 0.002305247439608138 EAAGEDDPC 9 Unmodified _EAAGEDDPC_ 0 0 0 CCDC40|p.I914Tfs*84|1|0.32|ENSG00000141519|chr17:80089792-80089793|-/C|frameshift_variant CCDC40|p.I914Tfs*84|1|0.32|ENSG00000141519|chr17:80089792-80089793|-/C|frameshift_variant CCDC40|p.I914Tfs*84|1|0.32|ENSG00000141519|chr17:80089792-80089793|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75726318359375 2 453.660915 905.307277 NaN NaN NaN NaN NaN NaN NaN 61.314 1 57.945 57.445 58.445 -3.3694 0 0 0 0.23508 1 11431 11431 4.3292 1.44 1 8270 420 5186 5190 8501 8501 -0.14916477552299057 EAAGGLAHRPS 11 Unmodified _EAAGGLAHRPS_ 0 0 0 REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.270263671875 2 533.275429 1064.53631 0.16118 8.5953E-05 -3.4114 -0.0018192 -3.2502 -0.0017333 533.7761577662753 21.034 0.24839 19.649 19.509 19.757 -1.3847 9 6 2 0 0 0 0.72351 1 3284 3284 10.151 0.076642 1 419200 + 8271 23209 5187 5191 8502 8502 0.006619025266218159 EAAGHGGS 8 Unmodified _EAAGHGGS_ 0 0 0 ENST00000355773.5_1_6:74304015-74304120:-|nuORF ENST00000355773.5_1_6:74304015-74304120:-|nuORF ENST00000355773.5_1_6:74304015-74304120:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.1354064941406 2 343.148635 684.282717 NaN NaN NaN NaN NaN NaN NaN 43.243 1 40.637 40.137 41.137 -2.606 0 0 0 0.23025 1 7800 7800 0.68139 0.55853 1 8272 8963 5188 5192 8503 8503 -0.07205324852839112 EAAGIPTPHPP 11 Unmodified _EAAGIPTPHPP_ 0 0 0 REV__KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant REV__KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7825927734375 2 543.782556 1085.55056 -0.11617 -6.3173E-05 1.3246 0.00072031 1.2085 0.00065714 543.7832938090773 108.74 0.76752 104.29 103.98 104.75 -4.4518 29 21 2 0 0 0 0.64855 1 20921 20921 15.248 0 1 2102700 + 8273 23733 5189 5193 8504 8504 0.01120554954900399 EAAGQALWAGL 11 Unmodified _EAAGQALWAGL_ 0 0 0 ENST00000474602.5_1_9:99381659-99381992:-|nuORF ENST00000474602.5_1_9:99381659-99381992:-|nuORF ENST00000474602.5_1_9:99381659-99381992:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7793579101562 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 43.679 1 40.889 40.389 41.389 -2.79 0 0 0 0.12979 1 8191 8191 31.268 7.4786 1 8274 10263 5190 5194 8505 8505 0.01120554954900399 EAAGQPGTPS 10 Unmodified _EAAGQPGTPS_ 0 0 0 REV__ENSG00000169047|ENST00000305123|IRS1 REV__ENSG00000169047|ENST00000305123|IRS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2333984375 2 457.714339 913.414125 0.21038 9.6294E-05 -0.14431 -6.6053E-05 0.06607 3.0241E-05 457.7141083374419 18.175 0.31465 18.175 17.987 18.302 0 12 8 3 0 0 0 0.87854 1 2927 2927 9.3831 1.473 1 921660 + 8275 18071 5191 5195 8506 8506 -0.04604559275617248 EAAGSEKH 8 Unmodified _EAAGSEKH_ 0 0 0 REV__ENST00000590513.2_1_17:40704842-40705703:-|nuORF REV__ENST00000590513.2_1_17:40704842-40705703:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 414.5345764160156 2 414.695949 827.377345 NaN NaN NaN NaN NaN NaN NaN 28.083 1 26.328 25.828 26.828 -1.7552 0 0 0 0.2343 1 4728 4728 0.063987 0 1 + 8276 23322 5192 5196 8507 8507 -0.04324811101525938 EAAGSLRA 8 Unmodified _EAAGSLRA_ 0 0 0 ENST00000298892.9_1_12:30906843-30907164:-|nuORF ENST00000298892.9_1_12:30906843-30907164:-|nuORF ENST00000298892.9_1_12:30906843-30907164:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7080993652344 2 387.70886 773.403166 NaN NaN NaN NaN NaN NaN NaN 23.506 1 21.953 21.453 22.453 -1.5532 0 0 0 0.21486 1 4058 4058 7.9102 0 1 8277 8530 5193 5197 8508 8508 0.007400831407494479 EAAHYLPE 8 Unmodified _EAAHYLPE_ 0 0 0 REV__ENST00000270776.12_1_1:10480016-10480181:+|nuORF REV__ENST00000270776.12_1_1:10480016-10480181:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25006103515625 2 465.2218 928.429047 0.11776 5.4782E-05 0.26684 0.00012414 0.3846 0.00017892 465.22170246000036 114.53 0.74152 114.53 114.15 114.89 0 32 20 2 0 0 0 0.56049 1 22461 22461 24.674 5.2349 1 1779700 + 8278 20271 5194 5198 8509 8509 -0.0380306740761398 EAAHYLPE 8 Unmodified _EAAHYLPE_ 0 0 0 REV__ENST00000270776.12_1_1:10480016-10480181:+|nuORF REV__ENST00000270776.12_1_1:10480016-10480181:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.2218 928.429047 0.11776 5.4782E-05 0.26684 0.00012414 0.3846 0.00017892 465.22170246000036 114.53 0.74152 114.53 114.15 114.89 0 0 0 NaN 24.674 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1779700 + 8279 20271 5194 5198 -0.0380306740761398 EAAHYQIIV 9 Unmodified _EAAHYQIIV_ 0 0 0 FGD4|p.K16Nfs*24|1|0.35|ENSG00000139132|chr12:32576401-32576401|A/-|frameshift_variant FGD4|p.K16Nfs*24|1|0.35|ENSG00000139132|chr12:32576401-32576401|A/-|frameshift_variant FGD4|p.K16Nfs*24|1|0.35|ENSG00000139132|chr12:32576401-32576401|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2813720703125 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 58.341 1 58.341 57.841 58.841 0 0 0 0 0.20628 1 11162 11162 21.747 5.8995 1 8280 11813 5195 5199 8510 8510 0.025174564432290936 EAAIDHHGL 9 Unmodified _EAAIDHHGL_ 0 0 0 REV__ENST00000264036.5_1_11:119182998-119183043:-|nuORF REV__ENST00000264036.5_1_11:119182998-119183043:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7698974609375 2 481.738148 961.461744 -0.21482 -0.00010349 -1.4565 -0.00070165 -1.6713 -0.00080513 481.7366425442268 94.735 0.16985 94.735 94.628 94.798 0 7 4 2 0 0 0 0.79204 1 18539 18539 16.942 7.5949 1 577700 + 8281 20225 5196 5200 8511 8511 -0.02052860284743474 EAAIELNR 8 Unmodified _EAAIELNR_ 0 0 0 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2287902832031 2 458.248349 914.482145 0.27115 0.00012425 0.60116 0.00027548 0.87231 0.00039973 458.24830280608495 32.449 0.66179 32.449 32.188 32.85 0 28 18 2 0 0 0 0.71876 1 5840 5840 11.64 0 1 1518300 + 8282 18776 5197 5201 8512 8512 0.021483103750597365 EAAIKHYQ 8 Unmodified _EAAIKHYQ_ 0 0 0 ENST00000510457.1_1_4:48091737-48136211:-|nuORF;ENSG00000074966|ENST00000264316|TXK ENST00000510457.1_1_4:48091737-48136211:-|nuORF ENST00000510457.1_1_4:48091737-48136211:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24285888671875 2 480.250892 958.48723 0.13956 6.7023E-05 -0.71457 -0.00034317 -0.57501 -0.00027615 480.25077959478546 61.967 0.8824 58.598 58.149 59.032 -3.3694 59 24 3 0 0 0 0.71273 1 11506 11506 12.532 0 1 3692700 8283 1507 5198 5202 8513 8513 0.006326142376565258 EAAIRKWLHGK 11 Unmodified _EAAIRKWLHGK_ 0 0 0 ENSG00000144031|ENST00000360589|ANKRD53 ENSG00000144031|ENST00000360589|ANKRD53 ENSG00000144031|ENST00000360589|ANKRD53 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22772216796875 3 436.922689 1307.74624 0.21081 9.2106E-05 -2.1073 -0.00092072 -1.8965 -0.00082862 437.2558652865725 28.196 0.44679 28.196 27.905 28.352 0 15 12 2 0 0 0 0.806 1 4958 4958 2.8433 1.5136 1 686780 8284 4539 5199 5203 8514 8514 0.10467565199587625 EAAIWAVY 8 Unmodified _EAAIWAVY_ 0 0 0 REV__nc|ENSG00000125505|Q96N66-3|MBOAT7 REV__nc|ENSG00000125505|Q96N66-3|MBOAT7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5230407714844 2 461.737086 921.459619 NaN NaN NaN NaN NaN NaN NaN 51.163 1 48.111 47.611 48.611 -3.0517 0 0 0 0.21181 1 9421 9421 15.768 5.5848 1 + 8285 15820 5200 5204 8515 8515 -0.004252890225870942 EAAKDGPVE 9 Unmodified _EAAKDGPVE_ 0 0 0 REV__ENSG00000214753|ENST00000301785|HNRNPUL2 REV__ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2449645996094 2 458.224539 914.434526 -0.028417 -1.3022E-05 -0.67887 -0.00031107 -0.70729 -0.0003241 458.22416968700986 49.085 1.4356 46.086 45.468 46.904 -2.999 100 40 5 0 0 0 0.46541 1 8961 8961 21.747 4.8044 1 40911000 + 8286 19674 5201 5205 8516 8516 -0.0261138861579866 EAAKHRYQL 9 Unmodified _EAAKHRYQL_ 0 0 0 NMT2|p.F121L|1|0.12|ENSG00000152465|chr10:15135302-15135302|A/T|missense_variant NMT2|p.F121L|1|0.12|ENSG00000152465|chr10:15135302-15135302|A/T|missense_variant NMT2|p.F121L|1|0.12|ENSG00000152465|chr10:15135302-15135302|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 372.8651428222656 3 372.536724 1114.58834 -0.69191 -0.00025776 0.53472 0.0001992 -0.1572 -5.8561E-05 372.5368747666709 42.598 0.79827 39.992 39.65 40.448 -2.606 37 22 2 0 0 0 0.77797 1 7696 7696 2.7352 0 1 1806200 8287 12695 5202 5206 8517 8517 0.03563065940375054 EAAKHRYQL 9 Unmodified _EAAKHRYQL_ 0 0 0 NMT2|p.F121L|1|0.12|ENSG00000152465|chr10:15135302-15135302|A/T|missense_variant NMT2|p.F121L|1|0.12|ENSG00000152465|chr10:15135302-15135302|A/T|missense_variant NMT2|p.F121L|1|0.12|ENSG00000152465|chr10:15135302-15135302|A/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 372.536724 1114.58834 -0.050969 -1.8988E-05 -0.072186 -2.6892E-05 -0.12315 -4.588E-05 372.53659770069766 42.452 0.97191 39.801 39.5 40.472 -2.651 -0.095262 -0.00036197 NaN 2.7352 36 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1701000 8288 12695 5202 5206 0.03563065940375054 EAAKLAEMG 9 Unmodified _EAAKLAEMG_ 0 0 0 REV__ENSG00000176986|ENST00000345254|SEC24C REV__ENSG00000176986|ENST00000345254|SEC24C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23175048828125 2 460.23131 918.448068 -0.037367 -1.7198E-05 0.27948 0.00012862 0.24211 0.00011143 460.2315131205253 39.701 0.46087 37.161 37.002 37.463 -2.5398 17 12 2 0 0 0 0.55539 1 7130 7130 16.149 3.1066 1 611220 + 8289 18532 5203 5207 8518 8518 -0.014418541082022784 EAAKLAEMG 9 Unmodified _EAAKLAEMG_ 0 0 0 REV__ENSG00000176986|ENST00000345254|SEC24C REV__ENSG00000176986|ENST00000345254|SEC24C MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.23131 918.448068 -0.351 -0.00016154 1.196 0.00055042 0.84495 0.00038887 460.2317102456621 39.878 0.45495 37.328 36.999 37.454 -2.5491 0.083727 0.00031615 NaN 16.149 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 895410 + 8290 18532 5203 5207 -0.014418541082022784 EAAKLAEMG 9 Unmodified _EAAKLAEMG_ 0 0 0 REV__ENSG00000176986|ENST00000345254|SEC24C REV__ENSG00000176986|ENST00000345254|SEC24C MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.23131 918.448068 -0.037367 -1.7198E-05 0.27948 0.00012862 0.24211 0.00011143 460.2315131205253 39.701 0.46087 37.161 37.002 37.463 -2.5398 -0.083727 -0.00052743 NaN 16.149 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 611220 + 8291 18532 5203 5207 -0.014418541082022784 EAAKLEEE 8 Unmodified _EAAKLEEE_ 0 0 0 REV__TSHZ1|p.K450Efs*47|1|0.13|ENSG00000179981|chr18:75286754-75286755|TA/-|frameshift_variant REV__TSHZ1|p.K450Efs*47|1|0.13|ENSG00000179981|chr18:75286754-75286755|TA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2264404296875 2 459.724372 917.434192 -0.14022 -6.446E-05 0.60663 0.00027888 0.46641 0.00021442 459.7245582787501 59.172 1.7431 56.261 55.203 56.946 -2.9105 116 49 4 0 0 0 0.73426 1 11450 11450 9.3474 0 1 22593000 + 8292 25491 5204 5208 8519 8519 -0.02782808335655318 EAAKLYDLAK 10 Unmodified _EAAKLYDLAK_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93;NUP93|p.F699Lfs*19|1|0.34|ENSG00000102900|chr16:56839025-56839025|T/-|frameshift_variant nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2135314941406 3 374.544885 1120.61282 -0.78861 -0.00029537 0.67661 0.00025342 -0.11199 -4.1947E-05 374.5450817244528 45.943 0.69399 43.077 42.747 43.441 -2.8666 56 19 4 0 0 0 0.74977 1 8309 8309 5.7834 0 1 7473600 8293 2151 5205 5209 8520 8520 0.05734281303239186 EAAKPQLY 8 Unmodified _EAAKPQLY_ 0 0 0 REV__TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant REV__TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2476806640625 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 30.496 1 28.422 27.922 28.922 -2.0743 0 0 0 0.21486 1 5224 5224 8.5933 1.304 1 + 8294 14245 5206 5210 8521 8521 0.018580960061512997 EAALAALARGT 11 Unmodified _EAALAALARGT_ 0 0 0 IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant;ENSG00000167378|ENST00000422989|IRGQ IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2593994140625 2 522.29583 1042.57711 0.16297 8.5121E-05 0.1697 8.8633E-05 0.33267 0.00017375 522.295957906906 19.57 1.0045 19.57 18.754 19.758 0 42 28 2 0 0 0 0.96036 1 3064 3064 8.1555 4.2111 1 1289300 8295 5805 5207 5211 8522 8522 0.057522438462456194 EAALMLCPQRE 11 Unmodified _EAALMLCPQRE_ 0 0 0 nc|ENSG00000187258|Q6W5P4-5|NPSR1;nc|ENSG00000187258|Q6W5P4-4|NPSR1 nc|ENSG00000187258|Q6W5P4-5|NPSR1 nc|ENSG00000187258|Q6W5P4-5|NPSR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.759033203125 2 630.80739 1259.60023 NaN NaN NaN NaN NaN NaN NaN 52.914 1 52.914 52.414 53.414 0 0 0 0 0.22632 1 10065 10065 0.58532 0.55391 1 8296 12525 5208 5212 8523 8523 -0.019188214229870937 EAALRGAS 8 Unmodified _EAALRGAS_ 0 0 0 ENST00000435427.5_1_22:29601977-29627061:+|nuORF ENST00000435427.5_1_22:29601977-29627061:+|nuORF ENST00000435427.5_1_22:29601977-29627061:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.70892333984375 2 387.70886 773.403166 -0.05003 -1.9397E-05 -0.35278 -0.00013678 -0.40281 -0.00015617 387.70870383181176 24.876 0.8822 24.876 24.475 25.358 0 62 25 3 0 0 0 0.69713 1 4236 4236 14.838 0 1 3338300 8297 9825 5209 5213 8524 8524 0.007400831407608166 EAALRSGA 8 Unmodified _EAALRSGA_ 0 0 0 nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7088928222656 2 387.70886 773.403166 -0.05003 -1.9397E-05 -0.35278 -0.00013678 -0.40281 -0.00015617 387.70870383181176 24.876 0.8822 24.876 24.475 25.358 0 62 25 3 0 0 0 0.72428 1 4376 4376 10.824 0 1 3338300 8298 5842 5210 5214 8525 8525 0.007400831407608166 EAALRSGA 8 Unmodified _EAALRSGA_ 0 0 0 nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.70843505859375 2 387.70886 773.403166 NaN NaN NaN NaN NaN NaN NaN 23.733 1 22.28 21.78 22.78 -1.4535 0 0 0 0.21171 1 3841 3841 15.847 0 1 8299 5842 5210 5214 8526 8526 0.007400831407608166 EAALRSGA 8 Unmodified _EAALRSGA_ 0 0 0 nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.70904541015625 2 387.70886 773.403166 NaN NaN NaN NaN NaN NaN NaN 26.42 1 24.498 23.998 24.998 -1.9222 0 0 0 0.21486 1 4377 4377 7.2892 0 1 8300 5842 5210 5214 8527 8527 0.007400831407608166 EAALWIQWRPL 11 Unmodified _EAALWIQWRPL_ 0 0 0 REV__NRDE2|p.N752Tfs*5|1|0.34|ENSG00000119720|chr14:90289120-90289120|T/-|frameshift_variant REV__NRDE2|p.N752Tfs*5|1|0.34|ENSG00000119720|chr14:90289120-90289120|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5220642089844 3 461.590828 1381.75066 NaN NaN NaN NaN NaN NaN NaN 70.641 1 67.061 66.561 67.561 -3.5798 0 0 0 0.23491 1 13317 13317 4.4062 0 1 + 8301 15595 5211 5215 8528 8528 0.07505029622507209 EAAMKAKT 8 Unmodified _EAAMKAKT_ 0 0 0 ENSG00000114023|ENST00000477892|FAM162A ENSG00000114023|ENST00000477892|FAM162A ENSG00000114023|ENST00000477892|FAM162A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2395324707031 2 425.228571 848.442588 NaN NaN NaN NaN NaN NaN NaN 60.785 1 57.562 57.062 58.062 -3.2237 0 0 0 0.2343 1 11370 11370 0.063987 0 1 8302 2771 5212 5216 8529 8529 0.012304670999810696 EAAMVAVATV 10 Unmodified _EAAMVAVATV_ 0 0 0 REV__DEAF1|p.F297Lfs*18|1|0.13|ENSG00000177030|chr11:681069-681069|A/-|frameshift_variant REV__DEAF1|p.F297Lfs*18|1|0.13|ENSG00000177030|chr11:681069-681069|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2533264160156 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 49.648 1 49.648 49.148 50.148 0 0 0 0 0.22588 1 9389 9389 13.042 2.2185 1 + 8303 13661 5213 5217 8530 8530 0.013190054429287557 EAANAPTKN 9 Unmodified _EAANAPTKN_ 0 0 0 PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant;PARPBP|p.N533Mfs*19|1|0.15|ENSG00000185480|chr12:102196145-102196145|A/-|frameshift_variant;ENSG00000185480|ENST00000327680|PARPBP;nc|ENSG00000185480|Q9NWS1-2|PARPBP;nc|ENSG00000185480|Q9NWS1-5|PARPBP PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23126220703125 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 22.884 1 21.331 20.831 21.831 -1.5532 0 0 0 0.19674 1 3927 3927 0.12781 0.06395 1 8304 6994 5214 5218 8531 8531 -0.0148856652166387 EAANAPTKN 9 Unmodified _EAANAPTKN_ 0 0 0 PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant;PARPBP|p.N533Mfs*19|1|0.15|ENSG00000185480|chr12:102196145-102196145|A/-|frameshift_variant;ENSG00000185480|ENST00000327680|PARPBP;nc|ENSG00000185480|Q9NWS1-2|PARPBP;nc|ENSG00000185480|Q9NWS1-5|PARPBP PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23126220703125 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 22.898 1 21.345 20.845 21.845 -1.5532 0 0 0 0.20628 1 3930 3930 21.747 1.293 1 8305 6994 5214 5218 8532 8532 -0.0148856652166387 EAAPAAPQKP 10 Unmodified _EAAPAAPQKP_ 0 0 0 REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2637023925781 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 57.834 1 57.834 57.334 58.334 0 0 0 0 0.22583 1 11060 11060 13.906 2.2658 1 + 8306 13202 5215 5219 8533 8533 0.023328834091330464 EAAPAMCEEE 10 Unmodified _EAAPAMCEEE_ 0 0 0 ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF ENST00000488967.5_1_10:90706975-90712518:-|nuORF ENST00000488967.5_1_10:90706975-90712518:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2739868164062 2 540.204632 1078.39471 0.2298 0.00012414 0.0026252 1.4181E-06 0.23242 0.00012556 540.2047122432293 97.638 1.2879 93.541 93.186 94.474 -4.0978 121 36 4 0 0 0 0.51405 1 19106 19106 3.8763 0 1 88067000 8307 10492 5216 5220 8534 8534 -0.14135019673062743 EAAPAMCEEE 10 Unmodified _EAAPAMCEEE_ 0 0 0 ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF ENST00000488967.5_1_10:90706975-90712518:-|nuORF ENST00000488967.5_1_10:90706975-90712518:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2815551757812 2 540.204632 1078.39471 0.27742 0.00014986 1.2168 0.00065731 1.4942 0.00080718 540.2054103813088 97.731 1.5596 93.496 93.156 94.716 -4.2348 147 44 5 0 0 0 0.74842 1 18619 18619 6.2058 1.8765 1 150190000 8308 10492 5216 5220 8535 8535 -0.14135019673062743 EAAPEPAAP 9 Unmodified _EAAPEPAAP_ 0 0 0 ENSG00000197380|ENST00000391916|DACT3 ENSG00000197380|ENST00000391916|DACT3 ENSG00000197380|ENST00000391916|DACT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.13775634765625 2 426.708525 851.402498 -0.080299 -3.4264E-05 -0.15447 -6.5912E-05 -0.23476 -0.00010018 426.7084581315275 41.457 1.1923 38.806 38.272 39.464 -2.651 51 33 2 0 0 0 0.72864 1 7481 7481 16.942 1.0951 1 999410 8309 7361 5217 5221 8536 8536 -0.029147562989578546 EAAPEPAAP 9 Unmodified _EAAPEPAAP_ 0 0 0 ENSG00000197380|ENST00000391916|DACT3 ENSG00000197380|ENST00000391916|DACT3 ENSG00000197380|ENST00000391916|DACT3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 426.708525 851.402498 0.2219 9.4685E-05 -0.28667 -0.00012232 -0.064772 -2.7639E-05 426.708308849241 38.825 1.2296 38.825 38.247 39.477 0 -0.056022 -0.00017837 NaN 16.942 46 34 2 NaN NaN NaN NaN 0 NaN NaN 0 778060 8310 7361 5217 5221 -0.029147562989578546 EAAPEPAAP 9 Unmodified _EAAPEPAAP_ 0 0 0 ENSG00000197380|ENST00000391916|DACT3 ENSG00000197380|ENST00000391916|DACT3 ENSG00000197380|ENST00000391916|DACT3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 426.708525 851.402498 -0.32961 -0.00014065 0.20685 8.8264E-05 -0.12277 -5.2385E-05 426.70860803299365 41.648 1.1378 39.013 38.396 39.534 -2.6348 0.13169 0.00024281 NaN 16.942 44 32 2 NaN NaN NaN NaN 0 NaN NaN 0 1358700 8311 7361 5217 5221 -0.029147562989578546 EAAPIPFTQL 10 Unmodified _EAAPIPFTQL_ 0 0 0 REV__ENSG00000184162|ENST00000331552|NR2C2AP REV__ENSG00000184162|ENST00000331552|NR2C2AP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.781494140625 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 93.681 1 93.681 93.181 94.181 0 0 0 0 0.22576 1 18335 18335 14.838 0.25658 1 + 8312 18881 5218 5222 8537 8537 0.03634609757477847 EAAPREHLG 9 Unmodified _EAAPREHLG_ 0 0 0 PDE3A|p.M322Ifs*82|1|0.17|ENSG00000172572|chr12:20556663-20556664|-/T|frameshift_variant;ENSG00000172572|ENST00000359062|PDE3A PDE3A|p.M322Ifs*82|1|0.17|ENSG00000172572|chr12:20556663-20556664|-/T|frameshift_variant PDE3A|p.M322Ifs*82|1|0.17|ENSG00000172572|chr12:20556663-20556664|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2523498535156 2 490.251423 978.488293 NaN NaN NaN NaN NaN NaN NaN 26.892 1 25.109 24.609 25.609 -1.7821 0 0 0 0.23508 1 4760 4760 8.5933 0.68312 1 8313 6232 5219 5223 8538 8538 -0.001811713934330328 EAAPSTQLG 9 Unmodified _EAAPSTQLG_ 0 0 0 ENSG00000119574|ENST00000594051|ZBTB45;ZBTB45|p.V377A|1|0.24|ENSG00000119574|chr19:58516544-58516544|A/G|missense_variant ENSG00000119574|ENST00000594051|ZBTB45 ENSG00000119574|ENST00000594051|ZBTB45 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21929931640625 2 437.219257 872.423961 0.16678 7.2918E-05 -0.10627 -4.6462E-05 0.060511 2.6457E-05 437.2191843119361 33.54 1.1188 33.54 33.059 34.178 0 71 31 3 0 0 0 0.57447 1 6235 6235 14.838 0.93222 1 5196100 8314 3086 5220 5224 8539 8539 -0.017353712702174562 EAAPSTQLG 9 Unmodified _EAAPSTQLG_ 0 0 0 ENSG00000119574|ENST00000594051|ZBTB45;ZBTB45|p.V377A|1|0.24|ENSG00000119574|chr19:58516544-58516544|A/G|missense_variant ENSG00000119574|ENST00000594051|ZBTB45 ENSG00000119574|ENST00000594051|ZBTB45 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21795654296875 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 42.043 1 39.324 38.824 39.824 -2.7191 0 0 0 0.23508 1 7858 7858 11.64 1.5664 1 8315 3086 5220 5224 8540 8540 -0.017353712702174562 EAAPVDQEDL 10 Unmodified _EAAPVDQEDL_ 0 0 0 REV__ENSG00000139832|ENST00000267328|RAB20 REV__ENSG00000139832|ENST00000267328|RAB20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78271484375 2 543.751118 1085.48768 0.013227 7.1921E-06 3.1795 0.0017288 3.1927 0.001736 544.2567401748663 78.309 0.13731 74.543 74.423 74.561 -3.7664 5 3 2 0 0 0 0.67319 1 14848 14848 13.906 4.5586 1 524960 + 8316 16546 5221 5225 8541 8541 -0.05164055623799868 EAAQMRPA 8 Unmodified _EAAQMRPA_ 0 0 0 ENSG00000110697|ENST00000356404|PITPNM1 ENSG00000110697|ENST00000356404|PITPNM1 ENSG00000110697|ENST00000356404|PITPNM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21673583984375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 94.824 1 90.774 90.274 91.274 -4.0496 0 0 0 0.21486 1 18584 18584 9.3474 3.587 1 8317 2581 5222 5226 8542 8542 -0.023875877025943737 EAAQMRPA 8 Unmodified _EAAQMRPA_ 0 0 0 ENSG00000110697|ENST00000356404|PITPNM1 ENSG00000110697|ENST00000356404|PITPNM1 ENSG00000110697|ENST00000356404|PITPNM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.217041015625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 20.296 1 18.911 18.411 19.411 -1.3847 0 0 0 0.21486 1 3143 3143 8.5933 0 1 8318 2581 5222 5226 8543 8543 -0.023875877025943737 EAAQMRPA 8 Unmodified _EAAQMRPA_ 0 0 0 ENSG00000110697|ENST00000356404|PITPNM1 ENSG00000110697|ENST00000356404|PITPNM1 ENSG00000110697|ENST00000356404|PITPNM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2356262207031 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 23.009 1 21.555 21.055 22.055 -1.4535 0 0 0 0.21486 1 3693 3693 5.7604 0 1 8319 2581 5222 5226 8544 8544 -0.023875877025943737 EAAQNLLY 8 Unmodified _EAAQNLLY_ 0 0 0 REV__TXLNB|p.P545Lfs*2|1|0.31|ENSG00000164440|chr6:139242947-139242947|G/-|frameshift_variant REV__TXLNB|p.P545Lfs*2|1|0.31|ENSG00000164440|chr6:139242947-139242947|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5367126464844 2 461.23745 920.460347 0.044619 2.058E-05 -0.13085 -6.0352E-05 -0.08623 -3.9773E-05 461.23739396862726 95.349 0.61922 95.349 95.042 95.661 0 30 17 2 0 0 0 0.98792 1 18617 18617 0.6015 0.6015 1 2425400 + 8320 17684 5223 5227 8545 8545 -0.0030649437351257802 EAAQPFLF 8 Unmodified _EAAQPFLF_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant;MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant;MYH14|p.P548Lfs*25|2|0.32|ENSG00000105357|chr19:50250520-50250520|C/-|frameshift_variant nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5414123535156 2 461.737086 921.459619 NaN NaN NaN NaN NaN NaN NaN 75.071 1 71.477 70.977 71.977 -3.594 0 0 0 0.21486 1 14266 14266 9.3474 0 1 8321 2300 5224 5228 8546 8546 -0.0042528902256435686 EAAQSCLQM 9 Unmodified _EAAQSCLQM_ 0 0 0 REV__nc|ENSG00000102780|Q86XP1-5|DGKH REV__nc|ENSG00000102780|Q86XP1-5|DGKH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 328.0205383300781 3 327.477377 979.410302 -0.76152 -0.00024938 0.31229 0.00010227 -0.44924 -0.00014711 327.477310227438 61.699 0.40808 61.699 61.631 62.039 0 13 11 2 0 0 0 0.87974 1 11881 11881 2.4985 0 1 787760 + 8322 14847 5225 5229 8547 8547 -0.08022688365326758 EAAREGHEE 9 Unmodified _EAAREGHEE_ 0 0 0 nc|ENSG00000132466|O75179-7|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000490185.1_1_5:139838323-139844373:+|nuORF;nc|ENSG00000132466|O75179-5|ANKRD17;ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1 nc|ENSG00000132466|O75179-7|ANKRD17;ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.2178039550781 3 343.152827 1026.43665 NaN NaN NaN NaN NaN NaN NaN 41.682 1 39.031 38.531 39.531 -2.651 0 0 0 0.23508 1 7493 7493 2.4985 0 1 8323 3680;12326 5226 5230 8548 8548 -0.07550959877994501 EAAREQVQI 9 Unmodified _EAAREQVQI_ 0 0 0 ENSG00000102174|ENST00000379374|PHEX ENSG00000102174|ENST00000379374|PHEX ENSG00000102174|ENST00000379374|PHEX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2777099609375 2 522.277638 1042.54072 0.22427 0.00011713 -0.39713 -0.00020741 -0.17286 -9.0281E-05 522.2775102360081 98.955 0.7858 94.999 94.696 95.482 -3.9564 46 22 3 0 0 0 0.48644 1 18959 18959 20.454 0.039092 1 3883700 8324 2113 5227 5231 8549 8549 0.021153669495333816 EAARHLASDP 10 Unmodified _EAARHLASDP_ 0 0 0 FRMD4A|p.R481H|1|0.1|ENSG00000151474|chr10:13666258-13666258|C/T|missense_variant FRMD4A|p.R481H|1|0.1|ENSG00000151474|chr10:13666258-13666258|C/T|missense_variant FRMD4A|p.R481H|1|0.1|ENSG00000151474|chr10:13666258-13666258|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.271484375 2 533.767437 1065.52032 0.42674 0.00022778 -0.30929 -0.00016509 0.11745 6.2691E-05 533.7671553248547 34.238 0.38072 32.022 31.812 32.193 -2.2158 16 10 2 0 0 0 0.87854 1 5976 5976 9.3831 9.3831 1 495630 8325 11826 5228 5232 8550 8550 -0.009818037102832022 EAARNNAK 8 Unmodified _EAARNNAK_ 0 0 0 REV__nc|ENSG00000122705|P09496-5|CLTA REV__nc|ENSG00000122705|P09496-5|CLTA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2308654785156 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 36.031 1 36.031 35.531 36.531 0 0 0 0 0.21015 1 6633 6633 1.4551 0.77368 1 + 8326 15701 5229 5233 8551 8551 0.00510272918040755 EAARRKQA 8 Unmodified _EAARRKQA_ 0 0 0 REV__ENSG00000167880|ENST00000301607|EVPL REV__ENSG00000167880|ENST00000301607|EVPL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.23919677734375 2 465.267407 928.520262 NaN NaN NaN NaN NaN NaN NaN 43.869 1 41.121 40.621 41.621 -2.7475 0 0 0 0.21171 1 7933 7933 15.847 4.2069 1 + 8327 17976 5230 5234 8552 8552 0.053142410803729945 EAARSPDK 8 Unmodified _EAARSPDK_ 0 0 0 ENST00000469563.1_1_1:894013-894620:-|nuORF;ENST00000487214.1_1_1:889839-894659:-|nuORF;ENSG00000188976|ENST00000327044|NOC2L ENST00000469563.1_1_1:894013-894620:-|nuORF ENST00000469563.1_1_1:894013-894620:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2362976074219 2 437.224874 872.435195 NaN NaN NaN NaN NaN NaN NaN 19.653 1 19.653 19.153 20.153 0 0 0 0 0.21292 1 3220 3220 14.838 0.25658 1 8328 7209 5231 5235 8553 8553 -0.006125491760940349 EAASLLRR 8 Unmodified _EAASLLRR_ 0 0 0 REV__nc|ENSG00000155307|Q9NSI8-2|SAMSN1 REV__nc|ENSG00000155307|Q9NSI8-2|SAMSN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23638916015625 2 458.272158 914.529764 -0.04447 -2.0379E-05 0.913 0.0004184 0.86853 0.00039802 458.2725190944972 43.474 0.17348 40.726 40.591 40.765 -2.7475 6 4 2 0 0 0 0.70613 1 7845 7845 13.508 0 1 492120 + 8329 17213 5232 5236 8554 8554 0.06908009365906764 EAASLRCPVP 10 Unmodified _EAASLRCPVP_ 0 0 0 ENST00000381476.5_1_9:5891164-5892465:+|nuORF ENST00000381476.5_1_9:5891164-5892465:+|nuORF ENST00000381476.5_1_9:5891164-5892465:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.272705078125 2 521.771134 1041.52771 -0.21137 -0.00011029 0.41547 0.00021678 0.2041 0.00010649 521.7713312766832 80.855 1.3561 77.298 76.708 78.064 -3.557 68 38 3 0 0 0 0.65108 1 15784 15784 16.149 2.5342 1 5296700 8330 9329 5233 5237 8555 8555 0.00861212565769165 EAASLRVAY 9 Unmodified _EAASLRVAY_ 0 0 0 REV__nc|ENSG00000160285|P48449-2|LSS REV__nc|ENSG00000160285|P48449-2|LSS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26422119140625 2 490.263999 978.513445 0.080788 3.9608E-05 0.21972 0.00010772 0.3005 0.00014733 490.2641523399602 102.54 0.52681 98.359 98.027 98.554 -4.1861 21 14 2 0 0 0 0.28246 1 20195 20195 0.87518 0 1 1418700 + 8331 17412 5234 5238 8556 8556 0.023328834091330464 EAASLRVAY 9 Unmodified _EAASLRVAY_ 0 0 0 REV__nc|ENSG00000160285|P48449-2|LSS REV__nc|ENSG00000160285|P48449-2|LSS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.264404296875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 98.094 1 93.996 93.496 94.496 -4.0978 0 0 0 0.20628 1 19259 19259 21.747 4.8044 1 + 8332 17412 5234 5238 8557 8557 0.023328834091330464 EAASLRVAY 9 Unmodified _EAASLRVAY_ 0 0 0 REV__nc|ENSG00000160285|P48449-2|LSS REV__nc|ENSG00000160285|P48449-2|LSS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25494384765625 2 490.263999 978.513445 0.37748 0.00018506 0.58669 0.00028763 0.96416 0.00047269 490.264405409272 102.73 0.90856 98.413 98.045 98.954 -4.3208 30 25 2 0 0 0 0.54354 1 19723 19723 16.942 5.302 1 1115300 + 8333 17412 5234 5238 8558 8558 0.023328834091330464 EAASLRVAY 9 Unmodified _EAASLRVAY_ 0 0 0 REV__nc|ENSG00000160285|P48449-2|LSS REV__nc|ENSG00000160285|P48449-2|LSS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2668151855469 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 52.126 1 49.038 48.538 49.538 -3.0876 0 0 0 0.20155 1 9583 9583 23.148 6.2061 1 + 8334 17412 5234 5238 8559 8559 0.023328834091330464 EAASLRVAY 9 Unmodified _EAASLRVAY_ 0 0 0 REV__nc|ENSG00000160285|P48449-2|LSS REV__nc|ENSG00000160285|P48449-2|LSS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2652282714844 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 72.082 1 68.455 67.955 68.955 -3.6275 0 0 0 0.23508 1 13605 13605 11.64 3.047 1 + 8335 17412 5234 5238 8560 8560 0.023328834091330464 EAASLRVAY 9 Unmodified _EAASLRVAY_ 0 0 0 REV__nc|ENSG00000160285|P48449-2|LSS REV__nc|ENSG00000160285|P48449-2|LSS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2643127441406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 51.981 1 48.929 48.429 49.429 -3.0517 0 0 0 0.16473 1 9585 9585 2.8827 0 1 + 8336 17412 5234 5238 8561 8561 0.023328834091330464 EAASPRWV 8 Unmodified _EAASPRWV_ 0 0 0 ENST00000518547.5_2_8:125740268-125740424:-|nuORF ENST00000518547.5_2_8:125740268-125740424:-|nuORF ENST00000518547.5_2_8:125740268-125740424:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22564697265625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 77.845 1 74.079 73.579 74.579 -3.7664 0 0 0 0.2074 1 14751 14751 19.439 4.8573 1 8337 10806 5235 5239 8562 8562 0.0003634506618936939 EAASPRWV 8 Unmodified _EAASPRWV_ 0 0 0 ENST00000518547.5_2_8:125740268-125740424:-|nuORF ENST00000518547.5_2_8:125740268-125740424:-|nuORF ENST00000518547.5_2_8:125740268-125740424:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2384338378906 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 78.227 1 74.46 73.96 74.96 -3.7664 0 0 0 0.21452 1 14831 14831 13.508 1.8676 1 8338 10806 5235 5239 8563 8563 0.0003634506618936939 EAASRTAAP 9 Unmodified _EAASRTAAP_ 0 0 0 ENST00000526623.2_1_11:64948241-64949272:-|nuORF ENST00000526623.2_1_11:64948241-64949272:-|nuORF ENST00000526623.2_1_11:64948241-64949272:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22601318359375 2 437.224874 872.435195 0.11511 5.0329E-05 -0.61586 -0.00026927 -0.50075 -0.00021894 437.2246043812266 18.599 0.66422 18.599 18.402 19.066 0 47 18 4 0 0 0 0.64382 1 3097 3097 10.074 0 1 36085000 8339 10916 5236 5240 8564 8564 -0.006125491761054036 EAASVPRSL 9 Unmodified _EAASVPRSL_ 0 0 0 REV__ENST00000588295.1_1_17:43112299-43129026:-|nuORF REV__ENST00000588295.1_1_17:43112299-43129026:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2567443847656 2 465.256174 928.497795 1.093 0.00050851 -0.47026 -0.00021879 0.62271 0.00028972 465.2560872561363 25.435 0.31536 23.786 23.58 23.896 -1.6482 13 8 3 0 0 0 0.65387 1 4457 4457 9.3831 0 1 726380 + 8340 23293 5237 5241 8565 8565 0.03068596892092046 EAATAAGHQEC 11 Unmodified _EAATAAGHQEC_ 0 0 0 ENST00000474125.6_1_10:102771704-102781716:-|nuORF ENST00000474125.6_1_10:102771704-102781716:-|nuORF ENST00000474125.6_1_10:102771704-102781716:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7830200195312 2 544.227288 1086.44002 0.57754 0.00031431 0.7171 0.00039026 1.2946 0.00070458 544.7293677232541 43.12 0.44371 43.12 42.953 43.397 0 18 12 2 0 0 0 0.25905 2 8107 8107;8110 17.113 2.2746 1 804010 8341 10252 5238 5242 8566;8567 8566 -0.09974033095613777 EAATAAGHQEC 11 Unmodified _EAATAAGHQEC_ 0 0 0 ENST00000474125.6_1_10:102771704-102781716:-|nuORF ENST00000474125.6_1_10:102771704-102781716:-|nuORF ENST00000474125.6_1_10:102771704-102781716:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7774047851562 2 544.227288 1086.44002 0.19317 0.00010513 0.74456 0.00040521 0.93773 0.00051034 544.2275574471806 46.123 0.41732 43.282 43.068 43.486 -2.8409 21 11 3 0 0 0 0.34662 1 8684 8684 0.11104 0 1 1250400 8342 10252 5238 5242 8568 8568 -0.09974033095613777 EAATAAGHQEC 11 Unmodified _EAATAAGHQEC_ 0 0 0 ENST00000474125.6_1_10:102771704-102781716:-|nuORF ENST00000474125.6_1_10:102771704-102781716:-|nuORF ENST00000474125.6_1_10:102771704-102781716:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7864990234375 2 544.227288 1086.44002 0.006771 3.6849E-06 1.6441 0.00089479 1.6509 0.00089847 544.2281838348453 46.193 0.61767 43.327 42.901 43.518 -2.8653 23 17 2 0 0 0 0.34662 3 8352 8315;8352;8354 17.113 2.2746 1 2470200 8343 10252 5238 5242 8569;8570;8571 8570 -0.09974033095613777 EAATASVKP 9 Unmodified _EAATASVKP_ 0 0 0 REV__ENSG00000253293|ENST00000283921|HOXA10 REV__ENSG00000253293|ENST00000283921|HOXA10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2160339355469 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 62.731 1 59.492 58.992 59.992 -3.2395 0 0 0 0.23508 1 11763 11763 11.64 2.2929 1 + 8344 19833 5239 5243 8572 8572 0.01901505626483413 EAATHGSQKL 10 Unmodified _EAATHGSQKL_ 0 0 0 ENST00000525556.1_1_8:61878844-61880304:-|nuORF ENST00000525556.1_1_8:61878844-61880304:-|nuORF ENST00000525556.1_1_8:61878844-61880304:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 347.8601379394531 3 347.848967 1040.52507 NaN NaN NaN NaN NaN NaN NaN 33.754 1 31.538 31.038 32.038 -2.2158 0 0 0 2.8426 1 5894 5894 0.013265 0 1 8345 10896 5240 5244 8573 8573 0.006430804324963901 EAATKSSR 8 Unmodified _EAATKSSR_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;ENST00000375218.3_1_1:19438989-19439337:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2386169433594 2 425.224874 848.435195 NaN NaN NaN NaN NaN NaN NaN 34.927 1 32.533 32.033 33.033 -2.3938 0 0 0 0.21486 1 6424 6424 8.5933 2.3875 1 8346 3477 5241 5245 8574 8574 0.0049145082390396055 EAATLIAI 8 Unmodified _EAATLIAI_ 0 0 0 REV__nc|ENSG00000074416|Q99685-2|MGLL REV__nc|ENSG00000074416|Q99685-2|MGLL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 401.3544921875 2 401.239461 800.46437 NaN NaN NaN NaN NaN NaN NaN 40.099 1 40.099 39.599 40.599 0 0 0 0 0.21486 1 7453 7453 5.2307 0 1 + 8347 14314 5242 5246 8575 8575 0.056155951201731114 EAATRGGSH 9 Unmodified _EAATRGGSH_ 0 0 0 nc|ENSG00000162572|P51172-1|SCNN1D nc|ENSG00000162572|P51172-1|SCNN1D nc|ENSG00000162572|P51172-1|SCNN1D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 443.7105407714844 2 443.212298 884.410043 -0.14313 -6.3438E-05 1.0296 0.00045632 0.88644 0.00039288 443.2142437546117 46.067 0.62324 43.226 42.898 43.521 -2.8409 27 17 2 0 0 0 0.37087 1 8717 8717 0.12781 0 1 870690 8348 12412 5243 5247 8576 8576 -0.036786039786534275 EAATSTLGGL 10 Unmodified _EAATSTLGGL_ 0 0 0 BCOR|p.P126Rfs*35|1|0.19|ENSG00000183337|chrX:40074969-40074969|G/-|frameshift_variant;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant;BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR BCOR|p.P126Rfs*35|1|0.19|ENSG00000183337|chrX:40074969-40074969|G/-|frameshift_variant BCOR|p.P126Rfs*35|1|0.19|ENSG00000183337|chrX:40074969-40074969|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23858642578125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 64.729 1 64.729 64.229 65.229 0 0 0 0 0.22588 1 12464 12464 13.042 1.4022 1 8349 311 5244 5248 8577 8577 0.00333184418309429 EAATTQLE 8 Unmodified _EAATTQLE_ 0 0 0 nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 863.4249267578125 1 862.415253 861.407977 1.354 0.0011677 -0.7827 -0.00067501 0.57132 0.00049271 862.4145506485031 26.861 0.47849 25.079 24.794 25.272 -1.7821 23 13 2 0 0 0 0.70613 1 4718 4718 13.508 1.8676 1 1125400 8350 3411 5245 5249 8578 8578 -0.02827077507129161 EAATTQLE 8 Unmodified _EAATTQLE_ 0 0 0 nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 863.4157104492188 1 862.415253 861.407977 0.4025 0.00034712 0.21188 0.00018273 0.61437 0.00052985 862.4151025278442 26.769 0.31549 25.135 24.966 25.282 -1.6347 12 8 2 0 0 0 0.70613 1 4472 4472 13.508 1.8676 1 587660 8351 3411 5245 5249 8579 8579 -0.02827077507129161 EAATTQLE 8 Unmodified _EAATTQLE_ 0 0 0 nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 862.415253 861.407977 0.55503 0.00047867 -0.29928 -0.0002581 0.25575 0.00022057 862.4148964369081 25.395 0.30743 25.395 25.118 25.425 0 0.23133 1.5341E-05 NaN 13.508 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1855400 8352 3411 5245 5249 -0.02827077507129161 EAATTQLE 8 Unmodified _EAATTQLE_ 0 0 0 nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 862.415253 861.407977 0.26457 0.00022817 0.24662 0.00021269 0.51119 0.00044086 862.415461234618 26.968 0.41389 25.046 24.776 25.19 -1.9222 -0.1176 0.00048614 NaN 13.508 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 464180 8353 3411 5245 5249 -0.02827077507129161 EAAVAAAVAA 10 Unmodified _EAAVAAAVAA_ 0 0 0 ZBTB8B|p.Y348Sfs*25|1|0.18|ENSG00000273274|chr1:32480941-32480942|-/C|frameshift_variant;ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B ZBTB8B|p.Y348Sfs*25|1|0.18|ENSG00000273274|chr1:32480941-32480942|-/C|frameshift_variant ZBTB8B|p.Y348Sfs*25|1|0.18|ENSG00000273274|chr1:32480941-32480942|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3787841796875 1 843.457059 842.449782 0.69294 0.00058447 -0.435 -0.0003669 0.25794 0.00021756 843.4566442918318 50.113 1.5833 50.113 49.547 51.131 0 132 45 5 0 0 0 0.23765 1 9649 9649 41.84 1.8899 1 156130000 8354 8011 5246 5250 8580 8580 0.022255229720371972 EAAVATPASRA 11 Unmodified _EAAVATPASRA_ 0 0 0 REV__ENST00000542438.1_1_12:120972159-120972757:+|nuORF REV__ENST00000542438.1_1_12:120972159-120972757:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2777709960938 2 522.277638 1042.54072 -0.00093558 -4.8863E-07 0.017816 9.3051E-06 0.016881 8.8165E-06 522.277606553734 52.548 0.38713 49.452 49.199 49.586 -3.0954 17 10 2 0 0 0 0.75285 1 9722 9722 8.1555 0 1 1154600 + 8355 22872 5247 5251 8581 8581 0.021153669495333816 EAAVLQVA 8 Unmodified _EAAVLQVA_ 0 0 0 REV__nc|ENSG00000058453|Q5TZA2-2|CROCC REV__nc|ENSG00000058453|Q5TZA2-2|CROCC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 400.2319030761719 2 400.729261 799.443968 0.29118 0.00011668 -0.65126 -0.00026098 -0.36008 -0.00014429 400.72943790932055 71.859 0.10612 68.231 68.161 68.267 -3.6275 4 2 2 0 0 0 0.88303 1 13554 13554 1.4551 1.0755 1 247160 + 8356 14129 5248 5252 8582 8582 0.036224244603772604 EAAVPFKGT 9 Unmodified _EAAVPFKGT_ 0 0 0 REV__nc|ENSG00000167524|Q96LW2|RSKR REV__nc|ENSG00000167524|Q96LW2|RSKR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2463073730469 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 24.008 1 22.454 21.954 22.954 -1.5532 0 0 0 0.21844 1 4166 4166 18.146 4.2403 1 + 8357 17934 5249 5253 8583 8583 0.018580960061626683 EAAVQQLR 8 Unmodified _EAAVQQLR_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;nc|ENSG00000186472|Q9Y6V0-3|PCLO ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22442626953125 2 457.756341 913.498129 0.05978 2.7365E-05 0.14843 6.7943E-05 0.20821 9.5308E-05 457.7563914962932 36.772 0.71576 34.424 34.073 34.789 -2.3479 67 20 4 0 0 0 0.58432 1 6551 6551 23.148 2.6948 1 18828000 8358 7060 5250 5254 8584 8584 0.03792016611964755 EAAVSAAVAAA 11 Unmodified _EAAVSAAVAAA_ 0 0 0 ENST00000264433.10_2_4:159750240-159753046:+|nuORF ENST00000264433.10_2_4:159750240-159753046:+|nuORF ENST00000264433.10_2_4:159750240-159753046:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25738525390625 2 465.748182 929.481811 -0.19272 -8.976E-05 0.12688 5.9093E-05 -0.065844 -3.0667E-05 465.7480972811867 24.971 0.37569 23.118 22.881 23.256 -1.8534 13 10 2 0 0 0 0.85028 1 4089 4089 22.736 2.2827 1 480360 8359 8339 5251 5255 8585 8585 0.014248906551870277 EAAVTPAEPY 10 Unmodified _EAAVTPAEPY_ 0 0 0 TMEM132A|p.R959Gfs*5|1|0.33|ENSG00000006118|chr11:60936704-60936704|G/-|frameshift_variant;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A;TMEM132A|p.Q246Afs*17|1|0.26|ENSG00000006118|chr11:60928822-60928823|-/C|frameshift_variant;TMEM132A|p.G360Afs*2|1|0.39|ENSG00000006118|chr11:60931747-60931747|G/-|frameshift_variant;nc|ENSG00000006118|Q24JP5-3|TMEM132A;TMEM132A|p.V473Cfs*16|1|0.43|ENSG00000006118|chr11:60933597-60933597|G/-|frameshift_variant;TMEM132A|p.L494Cfs*82|1|0.14|ENSG00000006118|chr11:60933660-60933660|C/-|frameshift_variant TMEM132A|p.R959Gfs*5|1|0.33|ENSG00000006118|chr11:60936704-60936704|G/-|frameshift_variant TMEM132A|p.R959Gfs*5|1|0.33|ENSG00000006118|chr11:60936704-60936704|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6898803710938 2 524.253297 1046.49204 0.36002 0.00018874 -0.1625 -8.519E-05 0.19752 0.00010355 524.2531811378898 35.628 0.56002 33.352 33.072 33.632 -2.2766 35 15 3 0 0 0 0.83242 1 6297 6297 20.454 12.543 1 3022500 8360 1005 5252 5256 8586 8586 -0.029345464102334518 EAAVTVSRE 9 Unmodified _EAAVTVSRE_ 0 0 0 ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1 ENST00000566833.1_1_15:43477651-43481519:+|nuORF ENST00000566833.1_1_15:43477651-43481519:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2501525878906 2 481.251089 960.487624 0.00093799 4.5141E-07 0.12975 6.244E-05 0.13068 6.2891E-05 481.25114282534514 147.47 0.41809 147.47 147.26 147.68 0 19 11 2 0 0 0 0.31728 1 29484 29484 1.2148 0.588 1 2012400 8361 5769 5253 5257 8587 8587 0.005799891668630153 EAAVVVAAAE 10 Unmodified _EAAVVVAAAE_ 0 0 0 REV__LRRCC1|p.A6V|2|0.24|ENSG00000133739|chr8:85107312-85107312|C/T|missense_variant REV__LRRCC1|p.A6V|2|0.24|ENSG00000133739|chr8:85107312-85107312|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2525939941406 2 465.250557 928.486562 0.044576 2.0739E-05 1.2908 0.00060056 1.3354 0.0006213 465.25094359709425 25.521 0.17385 23.951 23.817 23.991 -1.5695 7 4 2 0 0 0 0.53552 1 4193 4193 22.736 0 1 431970 + 8362 23819 5254 5258 8588 8588 0.01945774797957256 EAAVVVAAAE 10 Unmodified _EAAVVVAAAE_ 0 0 0 REV__LRRCC1|p.A6V|2|0.24|ENSG00000133739|chr8:85107312-85107312|C/T|missense_variant REV__LRRCC1|p.A6V|2|0.24|ENSG00000133739|chr8:85107312-85107312|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 465.250557 928.486562 1.1254 0.00052359 -0.73543 -0.00034216 0.38997 0.00018143 465.250448624995 25.651 0.17566 24.002 23.859 24.035 -1.6482 0.069453 -0.0013033 NaN 22.736 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 736500 + 8363 23819 5254 5258 0.01945774797957256 EAAVVVAAAE 10 Unmodified _EAAVVVAAAE_ 0 0 0 REV__LRRCC1|p.A6V|2|0.24|ENSG00000133739|chr8:85107312-85107312|C/T|missense_variant REV__LRRCC1|p.A6V|2|0.24|ENSG00000133739|chr8:85107312-85107312|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.250557 928.486562 0.044576 2.0739E-05 1.2908 0.00060056 1.3354 0.0006213 465.25094359709425 25.521 0.17385 23.951 23.817 23.991 -1.5695 0.018445 0.00058219 NaN 22.736 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 431970 + 8364 23819 5254 5258 0.01945774797957256 EAAWTSAH 8 Unmodified _EAAWTSAH_ 0 0 0 ENSG00000250803|ENST00000509403|unknown ENSG00000250803|ENST00000509403|unknown ENSG00000250803|ENST00000509403|unknown MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2194519042969 2 436.698492 871.382431 0.29438 0.00012856 -0.25122 -0.00010971 0.043164 1.885E-05 436.69836862396204 31.899 0.55687 29.751 29.479 30.036 -2.1483 23 15 2 0 0 0 8448 1 5490 5490 0.063987 0 1 973850 8365 7907 5255 5259 8589 8589 -0.05840507238895043 EAAYAAGV 8 Unmodified _EAAYAAGV_ 0 0 0 ENSG00000183696|ENST00000395564|UPP1;ENST00000495446.1_1_7:48146453-48147951:+|nuORF;ENST00000395560.7_1_7:48134363-48147951:+|nuORF ENSG00000183696|ENST00000395564|UPP1 ENSG00000183696|ENST00000395564|UPP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.220458984375 2 376.184686 750.354819 NaN NaN NaN NaN NaN NaN NaN 41.697 1 39.046 38.546 39.546 -2.651 0 0 0 0.22834 1 7496 7496 3.5871 1.8448 1 8366 6862 5256 5260 8590 8590 -0.030344104991399945 EAAYIKAY 8 Unmodified _EAAYIKAY_ 0 0 0 REV__ENSG00000198796|ENST00000361673|ALPK2 REV__ENSG00000198796|ENST00000361673|ALPK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651611328125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.311 1 69.311 68.811 69.811 0 0 0 0 0.23584 1 13416 13416 0.12286 0 1 + 8367 19451 5257 5261 8591 8591 0.00354693631857117 EAAYIQQR 8 Unmodified _EAAYIQQR_ 0 0 0 REV__ENSG00000096696|ENST00000379802|DSP REV__ENSG00000096696|ENST00000379802|DSP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2572326660156 2 489.753798 977.493044 0.32521 0.00015927 -0.31553 -0.00015453 0.0096783 4.74E-06 489.7536990465212 33.661 0.24078 31.514 31.393 31.634 -2.1468 9 6 2 0 0 0 0.60622 1 5855 5855 21.747 3.6003 1 659570 + 8368 14625 5258 5262 8592 8592 0.003397127493371954 EAAYLHGL 8 Unmodified _EAAYLHGL_ 0 0 0 REV__CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant REV__CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2361755371094 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 82.559 1 78.86 78.36 79.36 -3.6985 0 0 0 0.21486 1 15744 15744 9.3474 0.75416 1 + 8369 13462 5259 5263 8593 8593 -0.0021045968237558554 EACARQAEVF 10 Unmodified _EACARQAEVF_ 0 0 0 REV__HAPLN4|p.A179V|1|0.27|ENSG00000187664|chr19:19258804-19258804|G/A|missense_variant REV__HAPLN4|p.A179V|1|0.27|ENSG00000187664|chr19:19258804-19258804|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2203063964844 3 375.178207 1122.51279 -0.32796 -0.00012304 -2.1982 -0.00082472 -2.5262 -0.00094777 375.17739281663484 70.774 0.41362 70.774 70.626 71.039 0 17 11 2 0 0 0 0.74847 1 13685 13685 6.1918 1.663 1 1389200 + 8370 23602 5260 5264 8594 8594 -0.04356279302214716 EACARQAEVF 10 Unmodified _EACARQAEVF_ 0 0 0 REV__HAPLN4|p.A179V|1|0.27|ENSG00000187664|chr19:19258804-19258804|G/A|missense_variant REV__HAPLN4|p.A179V|1|0.27|ENSG00000187664|chr19:19258804-19258804|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.178207 1122.51279 -0.32796 -0.00012304 -2.1982 -0.00082472 -2.5262 -0.00094777 375.17739281663484 70.774 0.41362 70.774 70.626 71.039 0 -0.050349 0.00051472 NaN 6.1918 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1389200 + 8371 23602 5260 5264 -0.04356279302214716 EACARQAEVF 10 Unmodified _EACARQAEVF_ 0 0 0 REV__HAPLN4|p.A179V|1|0.27|ENSG00000187664|chr19:19258804-19258804|G/A|missense_variant REV__HAPLN4|p.A179V|1|0.27|ENSG00000187664|chr19:19258804-19258804|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.178207 1122.51279 -0.31682 -0.00011886 -2.9392 -0.0011027 -3.256 -0.0012216 375.1770643773685 74.239 0.48656 70.875 70.605 71.092 -3.3643 0.050349 -0.00031924 NaN 6.1918 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1576300 + 8372 23602 5260 5264 -0.04356279302214716 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC ENST00000431629.5_2_7:114654517-114655986:+|nuORF ENST00000431629.5_2_7:114654517-114655986:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 396.0869140625 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 8.7709 1 7.7362 7.2362 8.2362 -1.0347 0 0 0 0.21486 1 846 846 0 0 1 8373 3912 5261 5265 8595 8595 -0.24581483963413575 EACCCCCGDEM 11 Unmodified _EACCCCCGDEM_ 0 0 0 ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC ENST00000431629.5_2_7:114654517-114655986:+|nuORF ENST00000431629.5_2_7:114654517-114655986:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 583.6399536132812 2 583.641116 1165.26768 NaN NaN NaN NaN NaN NaN NaN 168.73 1 163.8 163.3 164.3 -4.9295 0 0 0 0.22632 1 33278 33278 0.0072825 0.0072825 1 8374 3912 5262 5266 8596 8596 -0.3083447147721472 EACDCLFE 8 Unmodified _EACDCLFE_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT;ENST00000443317.1_1_20:32802260-32803361:-|nuORF;XPOT|p.F594Lfs*9|1|0.32|ENSG00000184575|chr12:64430089-64430089|T/-|frameshift_variant;XPOT|p.L602Hfs*4|1|0.04|ENSG00000184575|chr12:64430115-64430116|-/A|frameshift_variant;ENST00000449426.1_1_7:56356611-56356824:+|nuORF ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24871826171875 2 465.172604 928.330655 NaN NaN NaN NaN NaN NaN NaN 66.194 1 63.147 62.647 63.647 -3.047 0 0 0 0.23749 1 12822 12822 0.0082765 0 1 8375 6921 5263 5267 8597 8597 -0.13637755039326294 EACDMALELNA 11 Unmodified _EACDMALELNA_ 0 0 0 nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF nc|ENSG00000105618|Q8WWY3-2|PRPF31 nc|ENSG00000105618|Q8WWY3-2|PRPF31 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2542724609375 2 590.254656 1178.49476 NaN NaN NaN NaN NaN NaN NaN 59.617 1 56.684 56.184 57.184 -2.9333 0 0 0 0.23324 1 11465 11465 5.7319 0.97584 1 8376 12272 5264 5268 8598 8598 -0.08734782339229241 EACDQLFMY 9 Unmodified _EACDQLFMY_ 0 0 0 REV__PGS1|p.V250M|1|0.17|ENSG00000087157|chr17:78400723-78400723|G/A|missense_variant REV__PGS1|p.V250M|1|0.17|ENSG00000087157|chr17:78400723-78400723|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.0975341796875 3 373.821032 1118.44127 NaN NaN NaN NaN NaN NaN NaN 69.293 1 66.113 65.613 66.613 -3.1796 0 0 0 0.23508 1 13473 13473 2.7352 0 1 + 8377 24458 5265 5269 8599 8599 -0.11321535051092724 EACGCCDQS 9 Unmodified _EACGCCDQS_ 0 0 0 REV__ENST00000229270.8_1_12:6978034-6978127:+|nuORF REV__ENST00000229270.8_1_12:6978034-6978127:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2299499511719 2 458.135695 914.256838 NaN NaN NaN NaN NaN NaN NaN 78.895 1 78.895 78.395 79.395 0 0 0 0 0.19632 1 15355 15355 0.0033805 0 1 + 8378 20060 5266 5270 8600 8600 -0.20372046473312366 EACGWERSCY 10 Unmodified _EACGWERSCY_ 0 0 0 REV__ENSG00000136383|ENST00000258888|ALPK3 REV__ENSG00000136383|ENST00000258888|ALPK3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 401.3045654296875 3 401.823436 1202.44848 -0.16611 -6.6748E-05 -0.93582 -0.00037603 -1.1019 -0.00044278 401.82325208398055 100.46 0.75938 96.299 95.94 96.699 -4.1594 38 21 2 0 0 0 0.91149 1 19677 19677 0.13989 0.04505 1 2706000 + 8379 16328 5267 5271 8601 8601 -0.14464802450675052 EACNRGYYDVA 11 Unmodified _EACNRGYYDVA_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.I1115Tfs*203|1|0.24|ENSG00000167522|chr16:89283198-89283198|A/-|frameshift_variant;ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant;ANKRD11|p.D1104Mfs*214|1|0.28|ENSG00000167522|chr16:89283233-89283233|T/-|frameshift_variant;ENST00000378332.6_1_16:89353515-89371640:-|nuORF;ENST00000562275.5_1_16:89354878-89371640:-|nuORF;ANKRD11|p.N452Ifs*3|1|0.39|ENSG00000167522|chr16:89285187-89285187|T/-|frameshift_variant ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7713012695312 2 630.769319 1259.52409 NaN NaN NaN NaN NaN NaN NaN 50.928 1 47.882 47.382 48.382 -3.0453 0 0 0 0.23324 1 9340 9340 5.7319 1.7875 1 8380 5813 5268 5272 8602 8602 -0.09529501998736123 EACPGLSTAL 10 Unmodified _EACPGLSTAL_ 0 0 0 ENST00000481805.1_1_10:81926537-81928838:-|nuORF ENST00000481805.1_1_10:81926537-81928838:-|nuORF ENST00000481805.1_1_10:81926537-81928838:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7818908691406 2 481.236593 960.458632 -0.043043 -2.0714E-05 0.65184 0.00031369 0.6088 0.00029297 481.23685229500575 89.575 0.56517 85.716 85.373 85.938 -3.8595 26 15 2 0 0 0 0.48672 1 17557 17557 25.399 4.9457 1 1213500 8381 10383 5269 5273 8603 8603 -0.023178714538062195 EACRFCGS 8 Unmodified _EACRFCGS_ 0 0 0 nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2 nc|ENSG00000005810|O75592-2|MYCBP2 nc|ENSG00000005810|O75592-2|MYCBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2177429199219 2 436.673105 871.331658 0.0058593 2.5586E-06 1.2546 0.00054783 1.2604 0.00055039 436.673541203547 51.632 1.0177 48.587 48.226 49.244 -3.0453 59 28 3 0 0 0 0.73936 1 9422 9422 8.5933 8.5933 1 4421400 8382 996 5270 5274 8604 8604 -0.10915495879760329 EACSCGPVAA 10 Unmodified _EACSCGPVAA_ 0 0 0 REV__PRSS1|p.L140Pfs*31|1|0.2|ENSG00000204983|chr7:142751989-142751990|-/C|frameshift_variant REV__PRSS1|p.L140Pfs*31|1|0.2|ENSG00000204983|chr7:142751989-142751990|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74755859375 2 454.186045 906.357538 -0.081867 -3.7183E-05 0.99721 0.00045292 0.91535 0.00041574 454.1877338779249 53.157 0.71941 50.062 49.62 50.339 -3.0954 68 20 4 0 0 0 0.83242 1 9795 9795 20.454 3.3407 1 4555700 + 8383 24516 5271 5275 8605 8605 -0.09938646428156517 EADAAFRSPT 10 Unmodified _EADAAFRSPT_ 0 0 0 tr|U7T5M7|U7T5M7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00018PE=3SV=1 tr|U7T5M7|U7T5M7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00018PE=3SV=1 tr|U7T5M7|U7T5M7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00018PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2737426757812 2 532.753995 1063.49344 0.51955 0.00027679 -0.5682 -0.00030271 -0.048653 -2.592E-05 532.753757835627 26.168 0.98193 24.534 24.23 25.212 -1.6347 63 27 4 0 0 0 0.093758 1 4354 4354 62.573 3.8939 1 12393000 8384 26469 5272 5276 8606 8606 -0.03576912321477721 EADAAFRSPT 10 Unmodified _EADAAFRSPT_ 0 0 0 tr|U7T5M7|U7T5M7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00018PE=3SV=1 tr|U7T5M7|U7T5M7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00018PE=3SV=1 tr|U7T5M7|U7T5M7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00018PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.753995 1063.49344 1.1814 0.00062937 -1.2784 -0.00068108 -0.09706 -5.1709E-05 532.7533903173447 26.258 1.0231 24.476 24.141 25.165 -1.7821 -0.029035 -0.00036702 NaN 62.573 66 29 4 NaN NaN NaN NaN 0 NaN NaN 0 13520000 8385 26469 5272 5276 -0.03576912321477721 EADAHFNL 8 Unmodified _EADAHFNL_ 0 0 0 REV__ENSG00000104369|ENST00000342232|JPH1 REV__ENSG00000104369|ENST00000342232|JPH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.238037109375 2 458.711599 915.408646 -0.20279 -9.3024E-05 -1.5163 -0.00069552 -1.7191 -0.00078855 458.71048285151323 73.036 0.17809 69.725 69.671 69.85 -3.3107 6 4 2 0 0 0 0.96284 1 14228 14228 8.5933 0 1 581810 + 8386 14919 5273 5277 8607 8607 -0.052442380674278866 EADALARPS 9 Unmodified _EADALARPS_ 0 0 0 ENST00000495841.1_1_7:116140184-116146172:+|nuORF ENST00000495841.1_1_7:116140184-116146172:+|nuORF ENST00000495841.1_1_7:116140184-116146172:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2375793457031 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 23.623 1 23.623 23.123 24.123 0 0 0 0 0.23508 1 4037 4037 13.042 0.80181 1 8387 10570 5274 5278 8608 8608 -0.005682800046201919 EADALVALN 9 Unmodified _EADALVALN_ 0 0 0 REV__ENSG00000116685|ENST00000376572|KIAA2013 REV__ENSG00000116685|ENST00000376572|KIAA2013 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22674560546875 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 51.62 1 48.574 48.074 49.074 -3.0453 0 0 0 0.17505 1 9484 9484 0.37959 0 1 + 8388 15491 5275 5279 8609 8609 0.010254882809022092 EADAQEQR 8 Unmodified _EADAQEQR_ 0 0 0 DEFA6|p.G43W|1|0.31|ENSG00000164822|chr8:6925909-6925909|C/A|missense_variant;ENSG00000164822|ENST00000297436|DEFA6 DEFA6|p.G43W|1|0.31|ENSG00000164822|chr8:6925909-6925909|C/A|missense_variant DEFA6|p.G43W|1|0.31|ENSG00000164822|chr8:6925909-6925909|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.14599609375 3 316.145672 945.415188 NaN NaN NaN NaN NaN NaN NaN 30.7 1 28.807 28.307 29.307 -1.8928 0 0 0 0.21486 1 5272 5272 1.4819 0 1 8389 812 5276 5280 8610 8610 -0.0597034490670012 EADEPDPESP 10 Unmodified _EADEPDPESP_ 0 0 0 REV__ENSG00000188032|ENST00000548523|C19orf67 REV__ENSG00000188032|ENST00000548523|C19orf67 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7808837890625 2 543.217108 1084.41966 -0.0855 -4.6445E-05 -1.3166 -0.00071518 -1.4021 -0.00076162 543.2163360572334 22.663 0.28396 21.209 21.049 21.333 -1.4535 14 7 2 0 0 0 0.71097 1 3590 3590 10.074 0.72649 1 812430 + 8390 19126 5277 5281 8611 8611 -0.11916925274454115 EADEPIKEL 9 Unmodified _EADEPIKEL_ 0 0 0 REV__ENSG00000114923|ENST00000358055|SLC4A3 REV__ENSG00000114923|ENST00000358055|SLC4A3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2672729492188 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 102.88 1 98.561 98.061 99.061 -4.3208 0 0 0 0.18755 1 19699 19699 0.87518 0.60979 1 + 8391 15393 5278 5282 8612 8612 -0.001302772387589357 EADEPIKEL 9 Unmodified _EADEPIKEL_ 0 0 0 REV__ENSG00000114923|ENST00000358055|SLC4A3 REV__ENSG00000114923|ENST00000358055|SLC4A3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2671508789062 2 522.266404 1042.51826 0.57466 0.00030013 0.46746 0.00024414 1.0421 0.00054427 522.2666994336855 102.47 0.58334 98.447 98.15 98.733 -4.0212 30 16 2 0 0 0 0.26282 1 19700 19700 1.6919 0 1 1378700 + 8392 15393 5278 5282 8613 8613 -0.001302772387589357 EADHEEGW 8 Unmodified _EADHEEGW_ 0 0 0 ENST00000481053.5_1_9:139256466-139257898:-|nuORF ENST00000481053.5_1_9:139256466-139257898:-|nuORF ENST00000481053.5_1_9:139256466-139257898:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.1250915527344 3 324.79464 971.362089 -0.48424 -0.00015728 0.28102 9.1274E-05 -0.20322 -6.6004E-05 324.7950641083262 20.385 0.42828 20.385 20.134 20.562 0 26 11 3 0 0 0 8448 1 3390 3390 0.68139 0.55853 1 1147700 8393 10365 5279 5283 8614 8614 -0.1247372268936715 EADHLQEEY 9 Unmodified _EADHLQEEY_ 0 0 0 nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 566.7858276367188 2 567.240918 1132.46728 -0.26727 -0.00015161 0.052973 3.0048E-05 -0.2143 -0.00012156 567.2409587624599 42.317 0.59476 39.598 39.245 39.84 -2.7191 26 16 3 0 0 0 0.72864 1 7896 7896 23.148 10.617 1 3553400 8394 4200 5280 5284 8615 8615 -0.09365226283603079 EADHLQEEY 9 Unmodified _EADHLQEEY_ 0 0 0 nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 567.240918 1132.46728 0.41256 0.00023402 -0.44493 -0.00025238 -0.032367 -1.836E-05 567.2406158281262 39.47 0.44358 39.47 39.201 39.644 0 -0.10532 -0.00048539 NaN 23.148 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1343500 8395 4200 5280 5284 -0.09365226283603079 EADHLQEEY 9 Unmodified _EADHLQEEY_ 0 0 0 nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 567.240918 1132.46728 -0.076441 -4.3361E-05 0.2546 0.00014442 0.17816 0.00010106 567.2410201931954 42.281 0.48956 39.631 39.321 39.811 -2.651 0.054829 0.00030821 NaN 23.148 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3674800 8396 4200 5280 5284 -0.09365226283603079 EADHLQEEY 9 Unmodified _EADHLQEEY_ 0 0 0 nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 567.240918 1132.46728 0.035037 1.9875E-05 0.24046 0.0001364 0.2755 0.00015628 567.2408785324382 42.21 0.53307 39.604 39.254 39.788 -2.606 0.028214 0.00029218 NaN 23.148 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3178800 8397 4200 5280 5284 -0.09365226283603079 EADKFYEDY 9 Unmodified _EADKFYEDY_ 0 0 0 tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2764282226562 2 590.245669 1178.47678 0.38039 0.00022452 1.1868 0.00070052 1.5672 0.00092504 590.2463293399499 41.037 0.51835 38.497 38.313 38.831 -2.5398 21 14 2 0 0 0 0.73309 1 7411 7411 4.756 0 1 1475700 8398 26190 5281 5285 8616 8616 -0.1053145799808135 EADKKIVVY 9 Unmodified _EADKKIVVY_ 0 0 0 REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2728271484375 2 532.802957 1063.59136 -0.034661 -1.8467E-05 -0.51833 -0.00027617 -0.55299 -0.00029464 532.8026584256353 49.043 0.38562 46.161 45.995 46.38 -2.8811 16 10 2 0 0 0 0.84208 1 9276 9276 3.9444 3.9444 1 830550 + 8399 18410 5282 5286 8617 8617 0.0621089627454694 EADLGLSVTG 10 Unmodified _EADLGLSVTG_ 0 0 0 REV__nc|ENSG00000105655|Q9NPH2-3|ISYNA1 REV__nc|ENSG00000105655|Q9NPH2-3|ISYNA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24462890625 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 26.498 1 24.576 24.076 25.076 -1.9222 0 0 0 0.22518 1 4391 4391 22.736 4.3632 1 + 8400 15007 5283 5287 8618 8618 -0.00542832927260406 EADNLTLRY 9 Unmodified _EADNLTLRY_ 0 0 0 MGAT2|p.R116Gfs*48|1|0.14|ENSG00000168282|chr14:49621609-49621609|C/-|frameshift_variant;ENSG00000168282|ENST00000305386|MGAT2 MGAT2|p.R116Gfs*48|1|0.14|ENSG00000168282|chr14:49621609-49621609|C/-|frameshift_variant MGAT2|p.R116Gfs*48|1|0.14|ENSG00000168282|chr14:49621609-49621609|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7666625976562 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 54.942 1 52.058 51.558 52.558 -2.8837 0 0 0 0.20155 1 10499 10499 23.148 1.4018 1 8401 5892 5284 5288 8619 8619 -0.0026405277033063612 EADPEKKY 8 Unmodified _EADPEKKY_ 0 0 0 nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10 nc|ENSG00000111271|Q6JQN1-3|ACAD10 nc|ENSG00000111271|Q6JQN1-3|ACAD10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26715087890625 2 490.24019 978.465826 0.32542 0.00015953 -0.13558 -6.6466E-05 0.18984 9.3066E-05 490.24006498485636 99.385 1.4074 95.116 94.367 95.774 -4.2692 130 40 4 0 0 0 0.73426 1 18877 18877 9.3474 0.75416 1 44113000 8402 2613 5285 5289 8620 8620 -0.024268155817139814 EADPEKKY 8 Unmodified _EADPEKKY_ 0 0 0 nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10 nc|ENSG00000111271|Q6JQN1-3|ACAD10 nc|ENSG00000111271|Q6JQN1-3|ACAD10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2640380859375 2 490.24019 978.465826 -0.3429 -0.0001681 0.099773 4.8913E-05 -0.24313 -0.00011919 490.2402602644775 45.948 0.13406 43.081 43.031 43.165 -2.8666 5 3 2 0 0 0 0.71273 1 8354 8354 12.532 0 1 287060 8403 2613 5285 5289 8621 8621 -0.024268155817139814 EADPWHQLQCF 11 Unmodified _EADPWHQLQCF_ 0 0 0 ENST00000292823.6_1_3:195964684-195965080:-|nuORF ENST00000292823.6_1_3:195964684-195965080:-|nuORF ENST00000292823.6_1_3:195964684-195965080:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22735595703125 3 458.536283 1372.58702 NaN NaN NaN NaN NaN NaN NaN 78.125 1 74.359 73.859 74.859 -3.7664 0 0 0 0.23491 1 14809 14809 4.4062 1.7749 1 8404 8480 5286 5290 8622 8622 -0.08436936210682688 EADQCEPD 8 Unmodified _EADQCEPD_ 0 0 0 REV__ENSG00000099625|ENST00000650044|CBARP REV__ENSG00000099625|ENST00000650044|CBARP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7494812011719 2 453.660915 905.307277 -0.4234 -0.00019208 1.5735 0.00071384 1.1501 0.00052176 453.66329942147644 38.687 0.55624 36.138 35.91 36.466 -2.5491 37 15 4 0 0 0 1.0147 1 7144 7144 9.3474 0 1 1844300 + 8405 14641 5287 5291 8623 8623 -0.14916477552299057 EADQLTQVY 9 Unmodified _EADQLTQVY_ 0 0 0 REV__ENST00000330825.3_1_13:45963855-45964907:+|nuORF REV__ENST00000330825.3_1_13:45963855-45964907:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2818603515625 2 533.756204 1065.49785 0.40466 0.00021599 -0.39182 -0.00020914 0.01284 6.8537E-06 533.7560727810766 31.485 0.70025 29.254 28.783 29.483 -2.2305 30 19 2 0 0 0 0.58804 1 5750 5750 13.906 2.4113 1 1129600 + 8406 20608 5288 5292 8624 8624 -0.03227447898552782 EADREPWETQ 10 Unmodified _EADREPWETQ_ 0 0 0 ENSG00000130307|ENST00000252597|USHBP1 ENSG00000130307|ENST00000252597|USHBP1 ENSG00000130307|ENST00000252597|USHBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7784423828125 2 630.778199 1259.54184 NaN NaN NaN NaN NaN NaN NaN 53.413 1 53.413 52.913 53.913 0 0 0 0 0.22588 1 10171 10171 3.5965 0 1 8407 3600 5289 5293 8625 8625 -0.07754463472224415 EADRRRAS 8 Unmodified _EADRRRAS_ 0 0 0 ENST00000472546.5_1_3:57875741-57882262:+|nuORF;ENST00000428312.5_1_3:57850570-57882262:+|nuORF ENST00000472546.5_1_3:57875741-57882262:+|nuORF ENST00000472546.5_1_3:57875741-57882262:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24383544921875 2 480.752121 959.48969 0.45496 0.00021872 2.2058 0.0010604 2.6608 0.0012792 480.75327852278957 31.094 0.59575 28.946 28.813 29.409 -2.1483 20 16 2 0 0 0 0.66066 1 5352 5352 36.044 0 1 491060 8408 9750 5290 5294 8626 8626 0.008324626953367442 EADRWFIGT 9 Unmodified _EADRWFIGT_ 0 0 0 ENST00000461221.5_1_17:41276090-41277297:-|nuORF ENST00000461221.5_1_17:41276090-41277297:-|nuORF ENST00000461221.5_1_17:41276090-41277297:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7680053710938 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 15.917 1 15.917 15.417 16.417 0 0 0 0 0.23508 1 2451 2451 4.3292 0.38484 1 8409 10066 5291 5295 8627 8627 -0.023760180791668972 EADRYITI 8 Unmodified _EADRYITI_ 0 0 0 tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1 tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1 tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2647399902344 2 490.756007 979.497461 0.23391 0.0001148 0.7441 0.00036517 0.97801 0.00047997 490.75625788823663 36.371 0.42018 36.371 36.248 36.668 0 17 11 2 0 0 0 0.99494 1 6713 6713 8.5933 0 1 1134300 8410 26441 5292 5296 8628 8628 0.006891771722393969 EADSILEDP 9 Unmodified _EADSILEDP_ 0 0 0 ZNF831|p.D1025Tfs*40|6|0.36|ENSG00000124203|chr20:59194085-59194085|G/-|frameshift_variant;ENSG00000124203|ENST00000371030|ZNF831 ZNF831|p.D1025Tfs*40|6|0.36|ENSG00000124203|chr20:59194085-59194085|G/-|frameshift_variant ZNF831|p.D1025Tfs*40|6|0.36|ENSG00000124203|chr20:59194085-59194085|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 330.4696960449219 3 330.153833 987.439671 -0.30926 -0.0001021 0.65091 0.0002149 0.34165 0.0001128 330.154092206473 76.43 0.56851 73.015 72.715 73.284 -3.4151 21 15 2 0 0 0 0.8799 1 14860 14860 2.4985 0 1 1027000 8411 3300 5293 5297 8629 8629 -0.05455129543838666 EADTHLFF 8 Unmodified _EADTHLFF_ 0 0 0 REV__PTPRD|p.R17H|1|0.12|ENSG00000153707|chr9:8733794-8733794|C/T|missense_variant REV__PTPRD|p.R17H|1|0.12|ENSG00000153707|chr9:8733794-8733794|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2651672363281 2 490.229625 978.444697 NaN NaN NaN NaN NaN NaN NaN 31.017 1 31.017 30.517 31.517 0 0 0 0 0.21486 1 5588 5588 12.532 2.4576 1 + 8412 24530 5294 5298 8630 8630 -0.04538780890561611 EADTIKWP 8 Unmodified _EADTIKWP_ 0 0 0 REV__ENSG00000074803|ENST00000380993|SLC12A1 REV__ENSG00000074803|ENST00000380993|SLC12A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2490234375 2 480.245275 958.475997 0.074177 3.5623E-05 1.1598 0.000557 1.234 0.00059263 480.2451825541548 95.653 0.68452 91.604 91.374 92.059 -4.0496 35 19 3 0 0 0 0.56049 1 18739 18739 24.674 8.8267 1 1571700 + 8413 14320 5295 5299 8631 8631 -0.0049020785647826415 EADTIKWP 8 Unmodified _EADTIKWP_ 0 0 0 REV__ENSG00000074803|ENST00000380993|SLC12A1 REV__ENSG00000074803|ENST00000380993|SLC12A1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.245275 958.475997 -0.21398 -0.00010276 1.3966 0.00067073 1.1827 0.00056797 480.2453497230943 91.506 0.51759 91.506 91.253 91.77 0 -0.096899 0.00019998 NaN 24.674 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1081700 + 8414 14320 5295 5299 -0.0049020785647826415 EADTIKWP 8 Unmodified _EADTIKWP_ 0 0 0 REV__ENSG00000074803|ENST00000380993|SLC12A1 REV__ENSG00000074803|ENST00000380993|SLC12A1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.245275 958.475997 0.074177 3.5623E-05 1.1598 0.000557 1.234 0.00059263 480.2451825541548 95.653 0.68452 91.604 91.374 92.059 -4.0496 0.0013397 -2.7479E-05 NaN 24.674 35 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1571700 + 8415 14320 5295 5299 -0.0049020785647826415 EADTIKWP 8 Unmodified _EADTIKWP_ 0 0 0 REV__ENSG00000074803|ENST00000380993|SLC12A1 REV__ENSG00000074803|ENST00000380993|SLC12A1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.245275 958.475997 0.14106 6.7745E-05 0.96099 0.00046151 1.1021 0.00052925 480.2450911414466 95.889 0.61877 91.698 91.444 92.063 -4.1911 0.095559 -0.00021847 NaN 24.674 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1594700 + 8416 14320 5295 5299 -0.0049020785647826415 EADVGITKF 9 Unmodified _EADVGITKF_ 0 0 0 ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7;PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant;PUS7|p.K415Rfs*43|1|0.26|ENSG00000091127|chr7:105470842-105470842|T/-|frameshift_variant ENSG00000091127|ENST00000469408|PUS7 ENSG00000091127|ENST00000469408|PUS7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2577209472656 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 89.659 1 85.881 85.381 86.381 -3.7779 0 0 0 0.11838 1 17161 17161 34.932 4.2955 1 8417 1802 5296 5300 8632 8632 0.012100613150096251 EADVPFRFN 9 Unmodified _EADVPFRFN_ 0 0 0 REV__PABPC5|p.A70V|1|0.17|ENSG00000174740|chrX:91435786-91435786|C/T|missense_variant REV__PABPC5|p.A70V|1|0.17|ENSG00000174740|chrX:91435786-91435786|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.767578125 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 15.55 1 14.197 13.697 14.697 -1.3534 0 0 0 0.23508 1 2148 2148 4.3292 0 1 + 8418 24425 5297 5301 8633 8633 -0.023760180791668972 EADVRAGR 8 Unmodified _EADVRAGR_ 0 0 0 nc|ENSG00000108852|Q14168-5|MPP2;nc|ENSG00000108852|Q14168-6|MPP2;nc|ENSG00000108852|Q14168-2|MPP2;ENSG00000108852|ENST00000269095|MPP2;nc|ENSG00000108852|Q14168-3|MPP2;nc|ENSG00000108852|Q14168|MPP2;nc|ENSG00000108852|Q14168-4|MPP2 nc|ENSG00000108852|Q14168-5|MPP2 nc|ENSG00000108852|Q14168-5|MPP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2306213378906 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 40.608 1 40.608 40.108 41.108 0 0 0 0 0.21486 1 7555 7555 5.2307 0 1 8419 2499 5298 5302 8634 8634 0.005102729180521237 EADVRLRLA 9 Unmodified _EADVRLRLA_ 0 0 0 nc|ENSG00000068078|P22607-2|FGFR3 nc|ENSG00000068078|P22607-2|FGFR3 nc|ENSG00000068078|P22607-2|FGFR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.258544921875 2 521.803823 1041.59309 -0.86991 -0.00045392 1.1063 0.00057726 0.23636 0.00012333 521.8044180091288 21.972 0.24097 20.571 20.439 20.68 -1.4009 9 6 2 0 0 0 0.85913 1 3461 3461 6.2058 0.9089 1 385950 8420 12231 5299 5303 8635 8635 0.07395950083150638 EADVRLRLA 9 Unmodified _EADVRLRLA_ 0 0 0 nc|ENSG00000068078|P22607-2|FGFR3 nc|ENSG00000068078|P22607-2|FGFR3 nc|ENSG00000068078|P22607-2|FGFR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2591552734375 2 521.803823 1041.59309 -0.54346 -0.00028358 0.58432 0.0003049 0.040858 2.132E-05 521.804101905897 22.262 0.31507 20.493 20.278 20.593 -1.7691 11 8 2 0 0 0 0.81703 1 3523 3523 14.838 1.7958 1 331950 8421 12231 5299 5303 8636 8636 0.07395950083150638 EADVSGMQSY 10 Unmodified _EADVSGMQSY_ 0 0 0 nc|ENSG00000290584|Q9P1P4|TAAR3P nc|ENSG00000290584|Q9P1P4|TAAR3P nc|ENSG00000290584|Q9P1P4|TAAR3P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7711791992188 2 543.724046 1085.43354 0.41968 0.00022819 -0.24743 -0.00013454 0.17224 9.3653E-05 543.7239542948539 68.833 0.69173 65.443 65.081 65.772 -3.3903 30 19 2 0 0 0 0.744 1 12934 12934 6.7232 0.51738 1 4368400 8422 12661 5300 5304 8637 8637 -0.10575971047001076 EADVVEHY 8 Unmodified _EADVVEHY_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2538757324219 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 59.227 1 56.317 55.817 56.817 -2.9105 0 0 0 0.20896 1 11383 11383 18.135 4.6271 1 + 8423 17494 5301 5305 8638 8638 -0.06291675132843011 EADVVEHY 8 Unmodified _EADVVEHY_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2335510253906 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 59.516 1 56.293 55.793 56.793 -3.2237 0 0 0 0.20896 1 11118 11118 18.135 4.6271 1 + 8424 17494 5301 5305 8639 8639 -0.06291675132843011 EADVVEHY 8 Unmodified _EADVVEHY_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24407958984375 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 59.627 1 56.403 55.903 56.903 -3.2237 0 0 0 0.20896 1 11142 11142 18.135 4.6271 1 + 8425 17494 5301 5305 8640 8640 -0.06291675132843011 EADWNGDSQ 9 Unmodified _EADWNGDSQ_ 0 0 0 REV__SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant REV__SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.13421630859375 3 341.133432 1020.37847 -0.49733 -0.00016966 0.61032 0.0002082 0.11299 3.8543E-05 341.13438008068186 54.378 2.0686 51.494 50.908 52.977 -2.8837 117 59 3 0 0 0 0.5428 1 10304 10304 4.897 4.897 1 8631200 + 8426 17741 5302 5306 8641 8641 -0.1309064152327437 EADWQYKK 8 Unmodified _EADWQYKK_ 0 0 0 REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5 REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.07281494140625 3 356.510063 1066.50836 -0.057988 -2.0673E-05 1.4513 0.0005174 1.3933 0.00049673 356.84450966234124 19.978 0.3794 18.582 18.344 18.723 -1.3966 14 10 2 0 0 0 1.0265 1 3336 3336 3.9444 0 1 896110 + 8427 15600 5303 5307 8642 8642 -0.022234204534925084 EADWQYKK 8 Unmodified _EADWQYKK_ 0 0 0 REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5 REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 356.510063 1066.50836 -0.31503 -0.00011231 1.3838 0.00049332 1.0687 0.00038101 356.84455188105267 18.455 0.38628 18.455 18.23 18.616 0 -0.063318 -4.4159E-05 NaN 3.9444 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1955100 + 8428 15600 5303 5307 -0.022234204534925084 EAEAADFY 8 Unmodified _EAEAADFY_ 0 0 0 REV__ENSG00000115306|ENST00000356805|SPTBN1 REV__ENSG00000115306|ENST00000356805|SPTBN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2389221191406 2 458.190165 914.365778 NaN NaN NaN NaN NaN NaN NaN 45.602 1 42.761 42.261 43.261 -2.8409 0 0 0 0.19492 1 8594 8594 26.341 6.9023 1 + 8429 15420 5304 5308 8643 8643 -0.09483052915516055 EAEAADFY 8 Unmodified _EAEAADFY_ 0 0 0 REV__ENSG00000115306|ENST00000356805|SPTBN1 REV__ENSG00000115306|ENST00000356805|SPTBN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2396240234375 2 458.190165 914.365778 NaN NaN NaN NaN NaN NaN NaN 45.879 1 43.013 42.513 43.513 -2.8666 0 0 0 0.21323 1 8336 8336 14.582 0 1 + 8430 15420 5304 5308 8644 8644 -0.09483052915516055 EAEAAFFANL 10 Unmodified _EAEAAFFANL_ 0 0 0 nc|ENSG00000185532|Q13976|PRKG1;nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;ENSG00000185532|ENST00000373980|PRKG1 nc|ENSG00000185532|Q13976|PRKG1 nc|ENSG00000185532|Q13976|PRKG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2775268554688 2 541.761289 1081.50803 -0.22951 -0.00012434 -1.8075 -0.00097924 -2.037 -0.0011036 541.7599458154693 107.39 0.48406 103.07 102.86 103.34 -4.32 19 13 2 0 0 0 0.83242 1 21124 21124 10.074 0 1 880620 8431 6999 5305 5309 8645 8645 -0.02946840173331111 EAEAAGGGLV 10 Unmodified _EAEAAGGGLV_ 0 0 0 ENST00000336133.7_1_12:56211499-56211535:-|nuORF ENST00000336133.7_1_12:56211499-56211535:-|nuORF ENST00000336133.7_1_12:56211499-56211535:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2185974121094 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 23.595 1 22.042 21.542 22.542 -1.5532 0 0 0 0.22544 1 4078 4078 19.257 1.122 1 8432 8805 5306 5310 8646 8646 -0.017353712702174562 EAEADGAAW 9 Unmodified _EAEADGAAW_ 0 0 0 PDCD7|p.K308Nfs*18|1|0.15|ENSG00000090470|chr15:65129117-65129117|T/-|frameshift_variant;ENSG00000090470|ENST00000204549|PDCD7 PDCD7|p.K308Nfs*18|1|0.15|ENSG00000090470|chr15:65129117-65129117|T/-|frameshift_variant PDCD7|p.K308Nfs*18|1|0.15|ENSG00000090470|chr15:65129117-65129117|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24322509765625 2 460.193239 918.371926 NaN NaN NaN NaN NaN NaN NaN 105.11 1 100.73 100.23 101.23 -4.3764 0 0 0 0.23508 1 20146 20146 8.5933 0.68312 1 8433 1786 5307 5311 8647 8647 -0.09052534683996782 EAEAEAVAVA 10 Unmodified _EAEAEAVAVA_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H318Tfs*10|1|0.32|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant nc|ENSG00000164889|P04920-2|SLC4A2 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2406921386719 2 480.237647 958.460741 0.32406 0.00015563 -0.50092 -0.00024056 -0.17686 -8.4933E-05 480.23737132260504 46.859 0.874 46.859 46.453 47.327 0 65 24 3 0 0 0 0.32088 1 8882 8882 36.127 7.0454 1 10877000 8434 5572 5308 5312 8648 8648 -0.020151194443315035 EAEAEAVAVA 10 Unmodified _EAEAEAVAVA_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H318Tfs*10|1|0.32|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant nc|ENSG00000164889|P04920-2|SLC4A2 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25177001953125 2 480.237647 958.460741 -0.11443 -5.4955E-05 0.025768 1.2375E-05 -0.088665 -4.258E-05 480.2376564042504 49.77 0.96036 46.763 46.416 47.376 -3.0068 80 27 4 0 0 0 0.12982 2 9158 9158;9165 52.268 7.7313 1 16098000 8435 5572 5308 5312 8649;8650 8649 -0.020151194443315035 EAEAEAVLG 9 Unmodified _EAEAEAVLG_ 0 0 0 REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 890.4371948242188 1 888.430903 887.423627 0.16516 0.00014673 -0.5716 -0.00050783 -0.40644 -0.00036109 888.4308059025219 42.188 1.0933 39.582 39.254 40.348 -2.606 62 30 3 0 0 0 0.38188 1 7601 7601 26.884 0 1 4652800 + 8436 23252 5309 5313 8651 8651 -0.02458790990090165 EAEAEAVLG 9 Unmodified _EAEAEAVLG_ 0 0 0 REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 888.430903 887.423627 0.6573 0.00058397 -0.94773 -0.00084199 -0.29043 -0.00025803 888.4303958562633 39.784 0.90925 39.784 39.372 40.281 0 0.19417 -0.00028422 NaN 26.884 42 25 2 NaN NaN NaN NaN 0 NaN NaN 0 3686300 + 8437 23252 5309 5313 -0.02458790990090165 EAEAEAVLG 9 Unmodified _EAEAEAVLG_ 0 0 0 REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 888.430903 887.423627 0.11182 9.9349E-05 -0.39441 -0.00035041 -0.28259 -0.00025106 888.4307914061493 42.154 0.73695 39.435 39.177 39.914 -2.7191 -0.15564 0.00020737 NaN 26.884 44 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4932100 + 8438 23252 5309 5313 -0.02458790990090165 EAEAEAVLG 9 Unmodified _EAEAEAVLG_ 0 0 0 REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 888.430903 887.423627 0.17488 0.00015536 -0.5022 -0.00044617 -0.32733 -0.00029081 888.4310103448726 42.211 0.9114 39.56 39.216 40.128 -2.651 -0.0301 0.0001116 NaN 26.884 42 25 3 NaN NaN NaN NaN 0 NaN NaN 0 3958100 + 8439 23252 5309 5313 -0.02458790990090165 EAEAEAVLG 9 Unmodified _EAEAEAVLG_ 0 0 0 REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 888.430903 887.423627 0.16516 0.00014673 -0.5716 -0.00050783 -0.40644 -0.00036109 888.4308059025219 42.188 1.0933 39.582 39.254 40.348 -2.606 -0.0084278 4.9946E-05 NaN 26.884 62 30 3 NaN NaN NaN NaN 0 NaN NaN 0 4652800 + 8440 23252 5309 5313 -0.02458790990090165 EAEAEAVLGA 10 Unmodified _EAEAEAVLGA_ 0 0 0 REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23138427734375 2 480.237647 958.460741 -0.089835 -4.3142E-05 -0.085527 -4.1073E-05 -0.17536 -8.4215E-05 480.23756202835006 49.605 0.90934 46.724 46.344 47.253 -2.8811 68 25 3 0 0 0 0.44731 1 9349 9349 27.629 0 1 16659000 + 8441 23252 5310 5314 8652 8652 -0.020151194443315035 EAEAEAVLGA 10 Unmodified _EAEAEAVLGA_ 0 0 0 REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2514343261719 2 480.237647 958.460741 -0.11443 -5.4955E-05 0.025768 1.2375E-05 -0.088665 -4.258E-05 480.2376564042504 49.77 0.96036 46.763 46.416 47.376 -3.0068 80 27 4 0 0 0 0.32088 1 9104 9104 36.127 0 1 16098000 + 8442 23252 5310 5314 8653 8653 -0.020151194443315035 EAEAFRAHL 9 Unmodified _EAEAFRAHL_ 0 0 0 REV__nc|ENSG00000170004|Q12873-3|CHD3 REV__nc|ENSG00000170004|Q12873-3|CHD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2655639648438 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 98.254 1 94.121 93.621 94.621 -4.1326 0 0 0 0.22251 1 19291 19291 16.942 0 1 + 8443 24159 5311 5315 8654 8654 3.401640651645721E-05 EAEALPRPP 9 Unmodified _EAEALPRPP_ 0 0 0 ENST00000441644.1_1_3:196359342-196359432:-|nuORF ENST00000441644.1_1_3:196359342-196359432:-|nuORF ENST00000441644.1_1_3:196359342-196359432:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2651062011719 2 490.263999 978.513445 -0.2809 -0.00013772 -1.2088 -0.00059262 -1.4897 -0.00073034 490.26332487166826 54.076 0.31501 50.938 50.712 51.027 -3.1377 20 8 3 0 0 0 0.6329 1 9959 9959 10.824 0.75 1 25071000 8444 9893 5312 5316 8655 8655 0.02332883409144415 EAEALVLQ 8 Unmodified _EAEALVLQ_ 0 0 0 ENST00000475185.5_1_18:20877516-20877840:-|nuORF ENST00000475185.5_1_18:20877516-20877840:-|nuORF ENST00000475185.5_1_18:20877516-20877840:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2167053222656 2 436.739825 871.465098 -0.12137 -5.3005E-05 0.18484 8.0725E-05 0.063471 2.772E-05 436.73987621799733 108.02 0.48096 103.6 103.34 103.82 -4.4121 19 13 2 0 0 0 0.68128 1 20760 20760 16.942 0 1 646430 8445 10274 5313 5317 8656 8656 0.024223897692422725 EAEAMLQVA 9 Unmodified _EAEAMLQVA_ 0 0 0 REV__ENST00000472855.5_1_20:23375586-23402039:-|nuORF REV__ENST00000472855.5_1_20:23375586-23402039:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2455139160156 2 481.236593 960.458632 0.12587 6.0571E-05 -0.021567 -1.0379E-05 0.1043 5.0192E-05 481.23683899849163 89.317 1.0104 85.539 85.068 86.078 -3.7779 57 28 3 0 0 0 0.46541 1 17195 17195 21.747 1.293 1 1474400 + 8446 15831 5314 5318 8657 8657 -0.02317871453783482 EAEAQKKQL 9 Unmodified _EAEAQKKQL_ 0 0 0 nc|ENSG00000184672|Q86SE5-2|RALYL;ENSG00000184672|ENST00000521268|RALYL;nc|ENSG00000184672|Q86SE5-3|RALYL nc|ENSG00000184672|Q86SE5-2|RALYL nc|ENSG00000184672|Q86SE5-2|RALYL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2655639648438 2 522.787838 1043.56112 -0.16935 -8.8537E-05 0.65728 0.00034362 0.48793 0.00025508 522.787865343831 98.272 0.41915 94.14 93.987 94.406 -4.1326 17 11 2 0 0 0 0.42289 1 19291 19291 32.305 5.4218 1 769060 8447 6927 5315 5319 8658 8658 0.04108537609340601 EAEAQQGKV 9 Unmodified _EAEAQQGKV_ 0 0 0 ENST00000537192.1_1_12:5480728-5487080:+|nuORF ENST00000537192.1_1_12:5480728-5487080:+|nuORF ENST00000537192.1_1_12:5480728-5487080:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24615478515625 2 480.243264 958.471974 0.2628 0.00012621 -0.48211 -0.00023153 -0.21931 -0.00010532 480.24300525993715 32.835 1.1517 30.688 29.82 30.972 -2.1468 66 32 3 0 0 0 0.5059 2 5595 5551;5595 19.257 1.1106 1 9064100 8448 11035 5316 5320 8659;8660 8660 -0.008922973501739762 EAEARTVCSV 10 Unmodified _EAEARTVCSV_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.270263671875 2 532.755681 1063.49681 0.1791 9.5419E-05 0.53919 0.00028726 0.7183 0.00038268 532.7557887430735 20.909 0.37738 19.525 19.307 19.684 -1.3847 15 10 2 0 0 0 0.85881 1 3284 3284 13.615 0 1 1148900 + 8449 15083 5317 5321 8661 8661 -0.032399855391076926 EAEASERSTEA 11 Unmodified _EAEASERSTEA_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2572631835938 2 590.259839 1178.50512 NaN NaN NaN NaN NaN NaN NaN 28.609 1 26.854 26.354 27.354 -1.7552 0 0 0 0.20277 1 4837 4837 18.146 2.2992 1 8450 5009 5318 5322 8662 8662 -0.07698760088783274 EAEAVASLAT 10 Unmodified _EAEAVASLAT_ 0 0 0 nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3;FHOD3|p.E810Rfs*8|2|0.26|ENSG00000134775|chr18:36718298-36718298|G/-|frameshift_variant nc|ENSG00000134775|Q2V2M9-2|FHOD3 nc|ENSG00000134775|Q2V2M9-2|FHOD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2457275390625 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 64.16 1 64.16 63.66 64.66 0 0 0 0 2.8426 1 12350 12350 11.57 0 1 8451 3874 5319 5323 8663 8663 -0.005428329272717747 EAEAVASLAT 10 Unmodified _EAEAVASLAT_ 0 0 0 nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3;FHOD3|p.E810Rfs*8|2|0.26|ENSG00000134775|chr18:36718298-36718298|G/-|frameshift_variant nc|ENSG00000134775|Q2V2M9-2|FHOD3 nc|ENSG00000134775|Q2V2M9-2|FHOD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24566650390625 2 481.245472 960.476391 0.0083109 3.9996E-06 -1.106 -0.00053225 -1.0977 -0.00052825 481.24525748620704 67.196 0.73526 64.087 63.652 64.387 -3.1086 26 20 3 0 0 0 0.033838 1 13011 13011 11.57 0 1 977240 8452 3874 5319 5323 8664 8664 -0.005428329272717747 EAEAVIEKDSS 11 Unmodified _EAEAVIEKDSS_ 0 0 0 REV__ENST00000561380.1_1_14:103805131-103805697:+|nuORF REV__ENST00000561380.1_1_14:103805131-103805697:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2509155273438 2 589.282783 1176.55101 0.71423 0.00042088 -0.21201 -0.00012494 0.50221 0.00029595 589.2826181565144 29.018 0.66552 27.263 26.946 27.611 -1.7552 49 18 3 0 0 0 0.59903 1 4869 4869 18.146 0 1 30963000 + 8453 14732 5320 5324 8665 8665 -0.030201149065533173 EAEDEPQV 8 Unmodified _EAEDEPQV_ 0 0 0 REV__nc|ENSG00000211652|P04211|IGLV7-43 REV__nc|ENSG00000211652|P04211|IGLV7-43 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2249755859375 2 458.698355 915.382156 NaN NaN NaN NaN NaN NaN NaN 26.469 1 26.469 25.969 26.969 0 0 0 0 0.20294 1 4634 4634 23.148 6.2061 1 + 8454 24247 5321 5325 8666 8666 -0.07891971749415916 EAEDHVES 8 Unmodified _EAEDHVES_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.R900Efs*2|2|0.38|ENSG00000124201|chr20:49255914-49255914|T/-|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ZNFX1|p.R554Qfs*30|1|0.27|ENSG00000124201|chr20:49270153-49270154|-/C|frameshift_variant ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2242126464844 2 458.188154 914.361755 NaN NaN NaN NaN NaN NaN NaN 42.882 1 42.882 42.382 43.382 0 0 0 0 0.22934 1 8027 8027 1.3295 0.63187 1 8455 3299 5322 5326 8667 8667 -0.09885142409223135 EAEDHVES 8 Unmodified _EAEDHVES_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.R900Efs*2|2|0.38|ENSG00000124201|chr20:49255914-49255914|T/-|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ZNFX1|p.R554Qfs*30|1|0.27|ENSG00000124201|chr20:49270153-49270154|-/C|frameshift_variant ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2376708984375 2 458.188154 914.361755 NaN NaN NaN NaN NaN NaN NaN 46.221 1 43.355 42.855 43.855 -2.8653 0 0 0 0.21452 1 8397 8397 13.508 0 1 8456 3299 5322 5326 8668 8668 -0.09885142409223135 EAEDNCQN 8 Unmodified _EAEDNCQN_ 0 0 0 REV__ENST00000562354.2_1_16:31719651-31719993:+|nuORF REV__ENST00000562354.2_1_16:31719651-31719993:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5384216308594 2 461.663989 921.313425 NaN NaN NaN NaN NaN NaN NaN 74.82 1 71.226 70.726 71.726 -3.594 0 0 0 0.23749 1 14216 14216 0.0082765 0 1 + 8457 23064 5323 5327 8669 8669 -0.15037959320773098 EAEEAPYM 8 Unmodified _EAEEAPYM_ 0 0 0 nc|ENSG00000166405|Q7Z5B4-5|RIC3;ENSG00000166405|ENST00000309737|RIC3;ENST00000530060.5_1_11:8132247-8149890:-|nuORF;ENST00000524799.5_1_11:8132247-8159930:-|nuORF nc|ENSG00000166405|Q7Z5B4-5|RIC3 nc|ENSG00000166405|Q7Z5B4-5|RIC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.185546875 3 313.796993 938.369149 -0.545 -0.00017102 -2.4287 -0.00076211 -2.9737 -0.00093313 313.79653235257615 72.329 0.34879 72.329 72.056 72.404 0 14 9 2 0 0 0 1.0265 1 13986 13986 1.6526 0 1 939780 8458 5719 5324 5328 8670 8670 -0.1025012613315539 EAEEEDSGDL 10 Unmodified _EAEEEDSGDL_ 0 0 0 REV__nc|ENSG00000177380|O75145-2|PPFIA3 REV__nc|ENSG00000177380|O75145-2|PPFIA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7698364257812 2 547.212023 1092.40949 0.42827 0.00023436 -2.7667 -0.001514 -2.3385 -0.0012796 547.2102768225762 118.25 0.44708 113.74 113.67 114.11 -4.502 14 12 2 0 0 0 0.664 1 23332 23332 14.838 0 1 2203100 + 8459 18554 5325 5329 8671 8671 -0.13301532999707888 EAEEEDSGDL 10 Unmodified _EAEEEDSGDL_ 0 0 0 REV__nc|ENSG00000177380|O75145-2|PPFIA3 REV__nc|ENSG00000177380|O75145-2|PPFIA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7881469726562 2 547.212023 1092.40949 0.42827 0.00023436 -2.7667 -0.001514 -2.3385 -0.0012796 547.2102768225762 118.25 0.44708 113.74 113.67 114.11 -4.502 14 12 2 0 0 0 0.871 1 23369 23369 14.838 0 1 2203100 + 8460 18554 5325 5329 8672 8672 -0.13301532999707888 EAEEEDSGDL 10 Unmodified _EAEEEDSGDL_ 0 0 0 REV__nc|ENSG00000177380|O75145-2|PPFIA3 REV__nc|ENSG00000177380|O75145-2|PPFIA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7703247070312 2 547.212023 1092.40949 0.45389 0.00024837 -4.0757 -0.0022303 -3.6218 -0.0019819 547.2093796603135 118.7 0.1035 114.2 114.11 114.22 -4.502 4 2 2 0 0 0 0.89521 1 23402 23402 6.7232 1.9672 1 1082100 + 8461 18554 5325 5329 8673 8673 -0.13301532999707888 EAEEENVDYY 10 Unmodified _EAEEENVDYY_ 0 0 0 REV__nc|ENSG00000087303|Q14112-2|NID2 REV__nc|ENSG00000087303|Q14112-2|NID2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7498168945312 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 17.181 1 15.965 15.465 16.465 -1.2159 0 0 0 0.22588 1 2742 2742 5.7319 2.1354 1 + 8462 14502 5326 5330 8674 8674 -0.13636984557206233 EAEEENVDYY 10 Unmodified _EAEEENVDYY_ 0 0 0 REV__nc|ENSG00000087303|Q14112-2|NID2 REV__nc|ENSG00000087303|Q14112-2|NID2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7506103515625 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 56.335 1 53.441 52.941 53.941 -2.8944 0 0 0 0.22588 1 10790 10790 3.9444 0.3479 1 + 8463 14502 5326 5330 8675 8675 -0.13636984557206233 EAEEENVDYY 10 Unmodified _EAEEENVDYY_ 0 0 0 REV__nc|ENSG00000087303|Q14112-2|NID2 REV__nc|ENSG00000087303|Q14112-2|NID2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.74951171875 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 101.7 1 97.525 97.025 98.025 -4.1761 0 0 0 0.20365 1 19982 19982 27.629 7.2143 1 + 8464 14502 5326 5330 8676 8676 -0.13636984557206233 EAEEENVDYY 10 Unmodified _EAEEENVDYY_ 0 0 0 REV__nc|ENSG00000087303|Q14112-2|NID2 REV__nc|ENSG00000087303|Q14112-2|NID2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.749755859375 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 24.701 1 23.167 22.667 23.667 -1.5342 0 0 0 0.22588 1 4030 4030 3.9444 2.1002 1 + 8465 14502 5326 5330 8677 8677 -0.13636984557206233 EAEEHVTEA 9 Unmodified _EAEEHVTEA_ 0 0 0 MAGEC2|p.P161H|1|0.28|ENSG00000046774|chrX:142203506-142203506|G/T|missense_variant MAGEC2|p.P161H|1|0.28|ENSG00000046774|chrX:142203506-142203506|G/T|missense_variant MAGEC2|p.P161H|1|0.28|ENSG00000046774|chrX:142203506-142203506|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.8174743652344 3 338.817333 1013.43017 NaN NaN NaN NaN NaN NaN NaN 47.517 1 47.517 47.017 48.017 0 0 0 0 0.19654 1 8963 8963 0.37959 0 1 8466 12103 5327 5331 8678 8678 -0.07600897829365749 EAEEPQVP 8 Unmodified _EAEEPQVP_ 0 0 0 ENSG00000219607|ENST00000405617|PPP1R3G ENSG00000219607|ENST00000405617|PPP1R3G ENSG00000219607|ENST00000405617|PPP1R3G MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.7126159667969 2 449.711265 897.407977 0.018561 8.3472E-06 0.19372 8.7119E-05 0.21228 9.5466E-05 449.71129575062633 55.956 2.2673 52.766 51.73 53.998 -3.1895 126 64 3 0 0 0 8448 1 10332 10332 4.2837 2.8286 1 8887100 8467 7758 5328 5332 8679 8679 -0.044830775071318385 EAEERKKKRKA 11 Unmodified _EAEERKKKRKA_ 0 0 0 REV__NOL8|p.D1050*|1|0.39|ENSG00000198000|chr9:92301578-92301579|-/A|frameshift_variant REV__NOL8|p.D1050*|1|0.39|ENSG00000198000|chr9:92301578-92301579|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23907470703125 3 458.272158 1371.79465 0.18163 8.3234E-05 0.90048 0.00041267 1.0821 0.0004959 458.272802303466 96.188 0.27381 96.188 96.011 96.285 0 12 7 2 0 0 0 0.96197 1 18810 18810 1.2148 1.1416 1 1121000 + 8468 19382 5329 5333 8680 8680 0.1236201404883559 EAEERKSA 8 Unmodified _EAEERKSA_ 0 0 0 REV__ENST00000607414.1_1_14:102415521-102415596:+|nuORF REV__ENST00000607414.1_1_14:102415521-102415596:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2276611328125 2 460.227613 918.440674 0.19906 9.1614E-05 -0.098791 -4.5467E-05 0.10027 4.6147E-05 460.22760648378363 20.38 1.4726 20.38 19.825 21.298 0 101 41 5 0 0 0 0.69436 1 3516 3516 19.257 0 1 75994000 + 8469 23471 5330 5334 8681 8681 -0.021808703842907562 EAEERLRSP 9 Unmodified _EAEERLRSP_ 0 0 0 REV__DTX3|p.P151S|1|0.45|ENSG00000178498|chr12:57607314-57607314|C/T|missense_variant REV__DTX3|p.P151S|1|0.45|ENSG00000178498|chr12:57607314-57607314|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77978515625 2 543.780544 1085.54654 1.3584 0.00073868 -1.0622 -0.0005776 0.29622 0.00016108 543.7797322310778 25.317 0.62856 23.669 23.337 23.966 -1.6482 28 17 2 0 0 0 0.57447 1 4490 4490 14.838 0.93222 1 911050 + 8470 13757 5331 5335 8682 8682 0.00718465461204687 EAEEVEAFY 9 Unmodified _EAEEVEAFY_ 0 0 0 REV__KCNA1|p.A349V|1|0.12|ENSG00000111262|chr12:4912424-4912424|C/T|missense_variant REV__KCNA1|p.A349V|1|0.12|ENSG00000111262|chr12:4912424-4912424|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79345703125 2 543.734937 1085.45532 0.7415 0.00040318 -0.19464 -0.00010583 0.54686 0.00029735 544.2341614936965 101.01 0.14017 101.01 100.94 101.08 0 5 3 2 0 0 0 0.79204 1 19815 19815 16.942 12.186 1 621590 + 8471 23699 5332 5336 8683 8683 -0.08398843026816394 EAEGAIKPT 9 Unmodified _EAEGAIKPT_ 0 0 0 ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;ZFHX4|p.R2647Gfs*44|1|0.25|ENSG00000091656|chr8:76854854-76854854|A/-|frameshift_variant;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.D2246*|1|0.34|ENSG00000091656|chr8:76853650-76853651|-/T|frameshift_variant;ZFHX4|p.P2056Hfs*26|1|0.19|ENSG00000091656|chr8:76853081-76853084|CCTC/-|frameshift_variant;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ZFHX4|p.I2143Nfs*7|1|0.31|ENSG00000091656|chr8:76853343-76853344|-/A|frameshift_variant;ZFHX4|p.P2057Hfs*26|2|0.17|ENSG00000091656|chr8:76853084-76853084|C/-|frameshift_variant;ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant;ZFHX4|p.L1719Cfs*6|1|0.13|ENSG00000091656|chr8:76852073-76852073|T/-|frameshift_variant;ZFHX4|p.Q1674Afs*4|1|0.14|ENSG00000091656|chr8:76851934-76851935|-/A|frameshift_variant;ZFHX4|p.H1565Tfs*5|1|0.28|ENSG00000091656|chr8:76851613-76851613|T/-|frameshift_variant;ZFHX4|p.K1442Nfs*10|1|0.18|ENSG00000091656|chr8:76851241-76851241|A/-|frameshift_variant;ZFHX4|p.V1343Sfs*4|1|0.08|ENSG00000091656|chr8:76850945-76850946|-/A|frameshift_variant;ZFHX4|p.K1867Nfs*7|1|0.09|ENSG00000091656|chr8:76852518-76852518|A/-|frameshift_variant ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2395935058594 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 91.627 1 91.627 91.127 92.127 0 0 0 0 0.23508 1 17911 17911 10.074 2.1638 1 8472 1815 5333 5337 8684 8684 0.010254882809135779 EAEHKIDL 8 Unmodified _EAEHKIDL_ 0 0 0 ENSG00000165644|ENST00000372538|COMTD1;ENST00000490521.1_1_10:76994304-76995073:-|nuORF;ENST00000470947.5_1_10:76993833-76995157:-|nuORF ENSG00000165644|ENST00000372538|COMTD1 ENSG00000165644|ENST00000372538|COMTD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73468017578125 2 477.748182 953.481811 0.12357 5.9036E-05 -0.082648 -3.9485E-05 0.040923 1.9551E-05 477.7480876171593 42.193 0.73713 42.193 41.794 42.531 0 44 20 3 0 0 0 0.68128 1 7861 7861 16.942 0 1 6923700 8473 5646 5334 5338 8685 8685 0.0032089065517766358 EAEHKIDL 8 Unmodified _EAEHKIDL_ 0 0 0 ENSG00000165644|ENST00000372538|COMTD1;ENST00000490521.1_1_10:76994304-76995073:-|nuORF;ENST00000470947.5_1_10:76993833-76995157:-|nuORF ENSG00000165644|ENST00000372538|COMTD1 ENSG00000165644|ENST00000372538|COMTD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7242736816406 2 477.748182 953.481811 -0.097906 -4.6774E-05 0.19429 9.2822E-05 0.096385 4.6048E-05 477.74820183758385 45.247 0.6995 42.38 42.083 42.783 -2.8666 62 19 4 0 0 0 0.69031 1 8249 8249 15.847 4.2069 1 6965600 8474 5646 5334 5338 8686 8686 0.0032089065517766358 EAEHKIDL 8 Unmodified _EAEHKIDL_ 0 0 0 ENSG00000165644|ENST00000372538|COMTD1;ENST00000490521.1_1_10:76994304-76995073:-|nuORF;ENST00000470947.5_1_10:76993833-76995157:-|nuORF ENSG00000165644|ENST00000372538|COMTD1 ENSG00000165644|ENST00000372538|COMTD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.748182 953.481811 -0.036578 -1.7475E-05 0.21134 0.00010097 0.17476 8.3491E-05 477.7481852723161 45.27 0.6373 42.405 42.055 42.693 -2.8653 0.074067 6.0821E-05 NaN 16.942 54 17 4 NaN NaN NaN NaN 0 NaN NaN 0 6600600 8475 5646 5334 5338 0.0032089065517766358 EAEIEQINP 9 Unmodified _EAEIEQINP_ 0 0 0 REV__nc|ENSG00000151835|Q9NZJ4-2|SACS REV__nc|ENSG00000151835|Q9NZJ4-2|SACS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2734375 2 521.756204 1041.49785 0.45331 0.00023652 -2.5037 -0.0013063 -2.0504 -0.0010698 521.7550451895137 99.43 0.52555 99.43 99.127 99.653 0 21 13 2 0 0 0 0.55539 1 19469 19469 16.149 1.3108 1 1738300 + 8476 17086 5335 5339 8687 8687 -0.021234478985661553 EAEIKVREA 9 Unmodified _EAEIKVREA_ 0 0 0 nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1;EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant;EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;nc|ENSG00000049283|Q9H201-2|EPN3;ENST00000495155.5_1_17:19186396-19216987:+|nuORF;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000049283|ENST00000268933|EPN3;ENSG00000072134|ENST00000314728|EPN2 nc|ENSG00000063245|Q9Y6I3-3|EPN1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.270751953125 2 522.787838 1043.56112 -0.22257 -0.00011636 0.35256 0.00018431 0.12998 6.7952E-05 522.7880904682036 60.042 0.55566 57.109 56.785 57.341 -2.9333 40 15 4 0 0 0 0.43603 1 11546 11546 2.8827 0.25143 1 5243500 8477 1328 5336 5340 8688 8688 0.04108537609340601 EAEIRECL 8 Unmodified _EAEIRECL_ 0 0 0 ENSG00000114670|ENST00000383366|NEK11 ENSG00000114670|ENST00000383366|NEK11 ENSG00000114670|ENST00000383366|NEK11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7864074707031 2 481.734217 961.453881 NaN NaN NaN NaN NaN NaN NaN 92.422 1 88.614 88.114 89.114 -3.8083 0 0 0 0.19753 1 17709 17709 25.399 2.663 1 8478 2805 5337 5341 8689 8689 -0.028387555965537103 EAEKEKNAY 9 Unmodified _EAEKEKNAY_ 0 0 0 CEP55|p.D247Ifs*9|1|0.25|ENSG00000138180|chr10:93516987-93516987|A/-|frameshift_variant;nc|ENSG00000138180|Q53EZ4-2|CEP55;ENSG00000138180|ENST00000371485|CEP55 CEP55|p.D247Ifs*9|1|0.25|ENSG00000138180|chr10:93516987-93516987|A/-|frameshift_variant CEP55|p.D247Ifs*9|1|0.25|ENSG00000138180|chr10:93516987-93516987|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2633056640625 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 84.775 1 80.866 80.366 81.366 -3.9093 0 0 0 0.23508 1 16116 16116 7.9102 1.187 1 8479 497 5338 5342 8690 8690 -0.028280455243020697 EAEKGSPVV 9 Unmodified _EAEKGSPVV_ 0 0 0 ENSG00000105668|ENST00000222275|UPK1A;nc|ENSG00000105668|O00322-2|UPK1A ENSG00000105668|ENST00000222275|UPK1A ENSG00000105668|ENST00000222275|UPK1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2326354980469 2 458.242732 914.470912 0.22735 0.00010418 0.15335 7.0271E-05 0.3807 0.00017445 458.2426503725637 37.418 0.59328 35.081 34.663 35.256 -2.3375 24 16 2 0 0 0 0.6329 1 6568 6568 10.824 0 1 762080 8480 2330 5339 5343 8691 8691 0.010254882809135779 EAEKQLQN 8 Unmodified _EAEKQLQN_ 0 0 0 nc|ENSG00000185418|A2RTX5-2|TARS3;ENSG00000185418|ENST00000335968|TARS3 nc|ENSG00000185418|A2RTX5-2|TARS3 nc|ENSG00000185418|A2RTX5-2|TARS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24542236328125 2 480.243264 958.471974 0.41724 0.00020038 -0.35128 -0.0001687 0.065962 3.1678E-05 480.2431539516656 32.259 0.48537 30.111 29.864 30.35 -2.1483 34 13 3 0 0 0 0.72428 1 5618 5618 10.824 0 1 1904700 8481 6987 5340 5344 8692 8692 -0.008922973501967135 EAEKQLQN 8 Unmodified _EAEKQLQN_ 0 0 0 nc|ENSG00000185418|A2RTX5-2|TARS3;ENSG00000185418|ENST00000335968|TARS3 nc|ENSG00000185418|A2RTX5-2|TARS3 nc|ENSG00000185418|A2RTX5-2|TARS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.243264 958.471974 0.20986 0.00010078 -0.14483 -6.9554E-05 0.06503 3.123E-05 480.24316732843323 32.33 0.46051 30.1 29.798 30.259 -2.2305 -0.013953 0.00011202 NaN 10.824 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2056500 8482 6987 5340 5344 -0.008922973501967135 EAEKQLQN 8 Unmodified _EAEKQLQN_ 0 0 0 nc|ENSG00000185418|A2RTX5-2|TARS3;ENSG00000185418|ENST00000335968|TARS3 nc|ENSG00000185418|A2RTX5-2|TARS3 nc|ENSG00000185418|A2RTX5-2|TARS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.243264 958.471974 0.28306 0.00013594 -0.30504 -0.00014649 -0.021982 -1.0557E-05 480.2431749208463 32.157 0.59406 30.131 29.798 30.392 -2.0264 0.016805 -4.1857E-05 NaN 10.824 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2015100 8483 6987 5340 5344 -0.008922973501967135 EAEKRSFSK 9 Unmodified _EAEKRSFSK_ 0 0 0 REV__ENSG00000215218|ENST00000399816|UBE2QL1 REV__ENSG00000215218|ENST00000399816|UBE2QL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2836303710938 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 19.107 1 17.782 17.282 18.282 -1.3251 0 0 0 0.22962 1 2894 2894 14.838 0 1 + 8484 19685 5341 5345 8693 8693 0.019316534665676954 EAEKVQVL 8 Unmodified _EAEKVQVL_ 0 0 0 REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1 REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2381896972656 2 458.260925 914.507297 0.11507 5.2732E-05 -0.054785 -2.5106E-05 0.060284 2.7626E-05 458.2608387728874 71.119 0.68578 71.119 70.767 71.453 0 39 19 3 0 0 0 0.31517 1 13838 13838 36.044 5.4077 1 6785700 + 8485 17129 5342 5346 8694 8694 0.04662365177614447 EAEKVSKE 8 Unmodified _EAEKVSKE_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;ENST00000586052.5_1_17:76450753-76471822:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2418212890625 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 19.207 1 19.207 18.707 19.707 0 0 0 0 0.21486 1 3128 3128 11.64 0 1 8486 7127 5343 5347 8695 8695 0.0033318441828669165 EAEKYKLV 8 Unmodified _EAEKYKLV_ 0 0 0 ENSG00000085265|ENST00000371806|FCN1 ENSG00000085265|ENST00000371806|FCN1 ENSG00000085265|ENST00000371806|FCN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2765197753906 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 104.25 1 104.25 103.75 104.75 0 0 0 0 0.20462 1 20487 20487 21.747 2.4897 1 8487 1676 5344 5348 8696 8696 0.048469382116991255 EAEKYKLV 8 Unmodified _EAEKYKLV_ 0 0 0 ENSG00000085265|ENST00000371806|FCN1 ENSG00000085265|ENST00000371806|FCN1 ENSG00000085265|ENST00000371806|FCN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27618408203125 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 108.02 1 103.88 103.38 104.38 -4.135 0 0 0 0.18898 1 20779 20779 28.487 7.6156 1 8488 1676 5344 5348 8697 8697 0.048469382116991255 EAELEEFL 8 Unmodified _EAELEEFL_ 0 0 0 nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2 nc|ENSG00000095383|Q9BYX2-3|TBC1D2 nc|ENSG00000095383|Q9BYX2-3|TBC1D2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2752990722656 2 490.234573 978.454593 NaN NaN NaN NaN NaN NaN NaN 103.24 1 103.24 102.74 103.74 0 0 0 0 0.21323 1 20285 20285 14.582 1.0738 1 8489 1858 5345 5349 8698 8698 -0.03549637675848771 EAELIMRRFVD 11 Unmodified _EAELIMRRFVD_ 0 0 0 REV__ENST00000448647.2_1_10:46914432-46914702:+|nuORF REV__ENST00000448647.2_1_10:46914432-46914702:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24468994140625 3 460.2431 1377.70747 NaN NaN NaN NaN NaN NaN NaN 76.557 1 73.142 72.642 73.642 -3.4151 0 0 0 0.22632 1 14943 14943 8.4443 0 1 + 8490 21780 5346 5350 8699 8699 0.03372471782927278 EAELKVQI 8 Unmodified _EAELKVQI_ 0 0 0 REV__ENST00000604826.1_1_6:34158651-34158831:+|nuORF REV__ENST00000604826.1_1_6:34158651-34158831:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23638916015625 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 138.59 1 133.95 133.45 134.45 -4.6413 0 0 0 0.17344 1 27364 27364 34.102 0 1 + 8491 23444 5347 5351 8700 8700 0.05582651694669494 EAELQAPD 8 Unmodified _EAELQAPD_ 0 0 0 ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000467009.1_1_1:155754962-155791309:-|nuORF;GON4L|p.Q673Efs*2|1|0.21|ENSG00000116580|chr1:155777695-155777696|TG/-|frameshift_variant ENSG00000116580|ENST00000368331|GON4L ENSG00000116580|ENST00000368331|GON4L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2272033691406 2 436.70344 871.392327 0.16614 7.2554E-05 -0.30706 -0.00013409 -0.14092 -6.154E-05 436.7032674908399 22.113 0.52366 22.113 21.875 22.398 0 25 14 2 0 0 0 0.73936 1 3779 3779 8.5933 0 1 651040 8492 2934 5348 5352 8701 8701 -0.04851364024193572 EAELQAQQY 9 Unmodified _EAELQAQQY_ 0 0 0 REV__ENSG00000177479|ENST00000356401|ARIH2 REV__ENSG00000177479|ENST00000356401|ARIH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2742309570312 2 540.253828 1078.4931 0.14506 7.8368E-05 -0.33721 -0.00018218 -0.19216 -0.00010381 540.2536211817355 67.823 0.54846 64.714 64.421 64.969 -3.1086 33 15 3 0 0 0 0.52414 1 13119 13119 18.135 2.2878 1 4651500 + 8493 18561 5349 5353 8702 8702 -0.04300332041339061 EAELQAQQY 9 Unmodified _EAELQAQQY_ 0 0 0 REV__ENSG00000177479|ENST00000356401|ARIH2 REV__ENSG00000177479|ENST00000356401|ARIH2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.253828 1078.4931 -0.041848 -2.2609E-05 -0.18219 -9.8429E-05 -0.22404 -0.00012104 540.2537991990464 64.551 0.51561 64.551 64.306 64.821 0 -0.11726 9.4663E-05 NaN 18.135 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2382800 + 8494 18561 5349 5353 -0.04300332041339061 EAELQAQQY 9 Unmodified _EAELQAQQY_ 0 0 0 REV__ENSG00000177479|ENST00000356401|ARIH2 REV__ENSG00000177479|ENST00000356401|ARIH2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.253828 1078.4931 0.14506 7.8368E-05 -0.33721 -0.00018218 -0.19216 -0.00010381 540.2536211817355 67.823 0.54846 64.714 64.421 64.969 -3.1086 0.045735 -7.2841E-05 NaN 18.135 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4651500 + 8495 18561 5349 5353 -0.04300332041339061 EAELQAQQY 9 Unmodified _EAELQAQQY_ 0 0 0 REV__ENSG00000177479|ENST00000356401|ARIH2 REV__ENSG00000177479|ENST00000356401|ARIH2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.253828 1078.4931 0.40784 0.00022034 -0.33241 -0.00017959 0.075434 4.0754E-05 540.2536532288628 68.13 0.76127 64.74 64.319 65.081 -3.3903 0.071522 -6.7649E-05 NaN 18.135 37 21 3 NaN NaN NaN NaN 0 NaN NaN 0 2716000 + 8496 18561 5349 5353 -0.04300332041339061 EAELRRQFEER 11 Unmodified _EAELRRQFEER_ 0 0 0 ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant;PDE4DIP|p.V841Lfs*4|1|0.41|ENSG00000178104|chr1:148978357-148978357|A/-|frameshift_variant;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-9|PDE4DIP;nc|ENSG00000178104|Q5VU43-8|PDE4DIP;nc|ENSG00000178104|Q5VU43-12|PDE4DIP;ENST00000477941.2_1_1:144952199-144955307:-|nuORF;nc|ENSG00000178104|Q5VU43-10|PDE4DIP;nc|ENSG00000178104|Q5VU43-11|PDE4DIP;ENST00000533259.1_1_1:144952356-145039598:-|nuORF ENSG00000178104|ENST00000695795|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 488.7131042480469 3 488.251423 1461.73244 NaN NaN NaN NaN NaN NaN NaN 93.697 1 93.697 93.197 94.197 0 0 0 0 0.22632 1 18339 18339 0.0059557 0 1 8497 6556 5350 5354 8703 8703 0.020042429098566572 EAELVAHDQ 9 Unmodified _EAELVAHDQ_ 0 0 0 REV__ENSG00000143375|ENST00000271636|CGN REV__ENSG00000143375|ENST00000271636|CGN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 506.71240234375 2 506.240721 1010.46689 0.20153 0.00010202 2.0639 0.0010448 2.2654 0.0011469 506.24165006601663 141.67 1.0089 141.67 141.4 142.41 0 43 28 2 0 0 0 0.24122 1 28290 28290 2.8827 0 1 4405200 + 8498 16722 5351 5355 8704 8704 -0.03792601212808222 EAELVQNL 8 Unmodified _EAELVQNL_ 0 0 0 REV__ENSG00000175985|ENST00000322564|PLEKHD1 REV__ENSG00000175985|ENST00000322564|PLEKHD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2401123046875 2 458.242732 914.470912 0.28314 0.00012975 0.26822 0.00012291 0.55135 0.00025265 458.24283143633727 30.194 1.8549 28.301 27.651 29.506 -1.8928 165 52 5 0 0 0 0.70613 1 5067 5067 13.508 0 1 75773000 + 8499 18495 5352 5356 8705 8705 0.010254882809135779 EAEMDFSCD 9 Unmodified _EAEMDFSCD_ 0 0 0 REV__nc|ENSG00000132604|Q15554-4|TERF2 REV__nc|ENSG00000132604|Q15554-4|TERF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.700439453125 2 523.675708 1045.33686 NaN NaN NaN NaN NaN NaN NaN 80.382 1 76.543 76.043 77.043 -3.8392 0 0 0 0.23508 1 15254 15254 4.3292 1.7518 1 + 8500 16125 5353 5357 8706 8706 -0.18399281598453854 EAEMDMHG 8 Unmodified _EAEMDMHG_ 0 0 0 REV__SLC2A7|p.T247M|1|0.31|ENSG00000197241|chr1:9014844-9014844|G/A|missense_variant REV__SLC2A7|p.T247M|1|0.31|ENSG00000197241|chr1:9014844-9014844|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5322265625 2 460.167853 918.321152 0.065812 3.0285E-05 1.9264 0.00088646 1.9922 0.00091675 460.1709888108578 36.73 1.0974 34.382 33.863 34.96 -2.3479 111 31 5 0 0 0 8448 1 6495 6495 0.30703 0.29875 1 2329300 + 8501 24637 5354 5358 8707 8707 -0.141275233248507 EAEMSPQE 8 Unmodified _EAEMSPQE_ 0 0 0 nc|ENSG00000180398|Q8NI22-2|MCFD2;nc|ENSG00000180398|Q8NI22-3|MCFD2;ENSG00000180398|ENST00000319466|MCFD2;ENST00000477791.5_1_2:47134810-47142912:-|nuORF nc|ENSG00000180398|Q8NI22-2|MCFD2 nc|ENSG00000180398|Q8NI22-2|MCFD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.231201171875 2 460.686933 919.359312 -0.24628 -0.00011346 1.1855 0.00054616 0.93925 0.0004327 460.6891918461808 113.15 0.69209 108.7 108.21 108.9 -4.4539 43 18 4 0 0 0 0.86877 1 22257 22257 3.5871 2.9057 1 1969600 8502 6673 5355 5359 8708 8708 -0.10359314138543141 EAEMSPQE 8 Unmodified _EAEMSPQE_ 0 0 0 nc|ENSG00000180398|Q8NI22-2|MCFD2;nc|ENSG00000180398|Q8NI22-3|MCFD2;ENSG00000180398|ENST00000319466|MCFD2;ENST00000477791.5_1_2:47134810-47142912:-|nuORF nc|ENSG00000180398|Q8NI22-2|MCFD2 nc|ENSG00000180398|Q8NI22-2|MCFD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2313232421875 2 460.686933 919.359312 0.56801 0.00026168 -1.6062 -0.00073994 -1.0381 -0.00047826 460.6886857980695 113.04 0.73588 108.77 108.46 109.2 -4.2725 73 20 5 0 0 0 0.89276 1 21736 21736 0.12286 0 1 2822100 8503 6673 5355 5359 8709 8709 -0.10359314138543141 EAENEDDLF 9 Unmodified _EAENEDDLF_ 0 0 0 nc|ENSG00000027075|P24723-2|PRKCH;ENSG00000027075|ENST00000332981|PRKCH nc|ENSG00000027075|P24723-2|PRKCH nc|ENSG00000027075|P24723-2|PRKCH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.277099609375 2 541.219651 1080.42475 0.32248 0.00017453 0.71526 0.00038711 1.0377 0.00056165 541.7206927707728 150.58 0.21472 145.84 145.71 145.93 -4.7323 6 5 2 0 0 0 0.56979 1 29925 29925 0.40827 0.2854 1 2221300 8504 1145 5356 5360 8710 8710 -0.11224621411861335 EAEPCGAWV 9 Unmodified _EAEPCGAWV_ 0 0 0 FCGRT|p.G107Efs*29|1|0.3|ENSG00000104870|chr19:49514123-49514123|G/-|frameshift_variant;ENST00000595881.1_1_19:50017122-50017545:+|nuORF;ENST00000598936.1_1_19:50016657-50017545:+|nuORF;ENST00000595677.5_1_19:50017155-50024968:+|nuORF;ENST00000452439.1_1_19:50016657-50027781:+|nuORF;ENSG00000104870|ENST00000221466|FCGRT FCGRT|p.G107Efs*29|1|0.3|ENSG00000104870|chr19:49514123-49514123|G/-|frameshift_variant FCGRT|p.G107Efs*29|1|0.3|ENSG00000104870|chr19:49514123-49514123|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2528381347656 2 481.207835 960.401117 NaN NaN NaN NaN NaN NaN NaN 71.356 1 68.107 67.607 68.607 -3.2492 0 0 0 0.23508 1 13892 13892 12.532 3.1841 1 8505 2262 5357 5361 8711 8711 -0.08066713659354718 EAEPGHGR 8 Unmodified _EAEPGHGR_ 0 0 0 ENST00000591120.1_1_19:5621399-5622763:-|nuORF ENST00000591120.1_1_19:5621399-5622763:-|nuORF ENST00000591120.1_1_19:5621399-5622763:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 426.7389831542969 2 426.701566 851.388579 NaN NaN NaN NaN NaN NaN NaN 31.566 1 29.418 28.918 29.918 -2.1483 0 0 0 0.2343 1 5443 5443 0.12286 0 1 8506 11612 5358 5362 8712 8712 -0.04305989007377775 EAEPKNIVG 9 Unmodified _EAEPKNIVG_ 0 0 0 REV__ENST00000477791.5_1_2:47134810-47142912:-|nuORF REV__ENST00000477791.5_1_2:47134810-47142912:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7212219238281 2 478.756007 955.497461 NaN NaN NaN NaN NaN NaN NaN 103.45 1 103.45 102.95 103.95 0 0 0 0 0.21065 1 20328 20328 20.454 6.5476 1 + 8507 22124 5359 5363 8713 8713 0.01793177172248761 EAEPKNIVG 9 Unmodified _EAEPKNIVG_ 0 0 0 REV__ENST00000477791.5_1_2:47134810-47142912:-|nuORF REV__ENST00000477791.5_1_2:47134810-47142912:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7230529785156 2 478.756007 955.497461 NaN NaN NaN NaN NaN NaN NaN 107.8 1 103.48 102.98 103.98 -4.32 0 0 0 0.18705 1 21236 21236 25.399 8.2864 1 + 8508 22124 5359 5363 8714 8714 0.01793177172248761 EAEPPSVDI 9 Unmodified _EAEPPSVDI_ 0 0 0 REV__nc|ENSG00000146205|Q6IWH7-2|ANO7 REV__nc|ENSG00000146205|Q6IWH7-2|ANO7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73095703125 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 110.96 1 106.73 106.23 107.23 -4.2289 0 0 0 0.23508 1 21354 21354 11.64 1.4569 1 + 8509 24087 5360 5364 8715 8715 -0.02966521818621004 EAEPRPVY 8 Unmodified _EAEPRPVY_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2427062988281 2 480.742899 959.471246 0.28583 0.00013741 0.16285 7.8289E-05 0.44868 0.0002157 480.74270270889184 69.837 0.73385 66.382 66.126 66.86 -3.4548 45 20 3 0 0 0 0.53444 1 13290 13290 26.341 9.399 1 2889800 + 8510 13287 5361 5365 8716 8716 -0.010110919992484924 EAEPRVDY 8 Unmodified _EAEPRVDY_ 0 0 0 REV__tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1 REV__tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.264892578125 2 489.729989 977.445425 -0.024862 -1.2176E-05 0.76641 0.00037533 0.74155 0.00036316 489.73038201344946 37.699 0.86695 35.362 34.701 35.568 -2.3375 32 24 2 0 0 0 0.69887 1 6625 6625 14.582 0.67564 1 2081500 + 8511 25052 5362 5366 8717 8717 -0.0441998624153257 EAEQDSHV 8 Unmodified _EAEQDSHV_ 0 0 0 REV__ENST00000360803.8_1_10:1042096-1043181:+|nuORF REV__ENST00000360803.8_1_10:1042096-1043181:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2254333496094 2 457.696146 913.377739 0.38208 0.00017488 -1.2102 -0.0005539 -0.82811 -0.00037902 457.6958941010782 38.836 1.1609 38.836 38.211 39.372 0 75 32 3 0 0 0 8448 1 7163 7163 0.12286 0.049601 1 2802900 + 8512 20871 5363 5367 8718 8718 -0.08241436172329486 EAEQKSMP 8 Unmodified _EAEQKSMP_ 0 0 0 REV__ENSG00000169508|ENST00000376414|GPR183 REV__ENSG00000169508|ENST00000376414|GPR183 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2467956542969 2 460.213117 918.411682 -0.053002 -2.4392E-05 -0.92302 -0.00042479 -0.97603 -0.00044918 460.21303728811034 46.727 0.79471 43.785 43.374 44.168 -2.9421 50 22 3 0 0 0 0.27447 1 8463 8463 37.974 1.9298 1 1545400 + 8513 18107 5364 5368 8719 8719 -0.05078731004925885 EAEQKSMP 8 Unmodified _EAEQKSMP_ 0 0 0 REV__ENSG00000169508|ENST00000376414|GPR183 REV__ENSG00000169508|ENST00000376414|GPR183 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23974609375 2 460.213117 918.411682 NaN NaN NaN NaN NaN NaN NaN 42.114 1 39.463 38.963 39.963 -2.651 0 0 0 0.19136 1 7574 7574 27.629 4.8925 1 + 8514 18107 5364 5368 8720 8720 -0.05078731004925885 EAEQKSMP 8 Unmodified _EAEQKSMP_ 0 0 0 REV__ENSG00000169508|ENST00000376414|GPR183 REV__ENSG00000169508|ENST00000376414|GPR183 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23529052734375 2 460.213117 918.411682 -0.053002 -2.4392E-05 -0.92302 -0.00042479 -0.97603 -0.00044918 460.21303728811034 46.727 0.79471 43.785 43.374 44.168 -2.9421 50 22 3 0 0 0 0.83888 1 8451 8451 30.637 2.1497 1 1545400 + 8515 18107 5364 5368 8721 8721 -0.05078731004925885 EAEQLCVK 8 Unmodified _EAEQLCVK_ 0 0 0 REV__CCDC120|p.A127Gfs*11|1|0.07|ENSG00000147144|chrX:49064422-49064423|-/G|frameshift_variant REV__CCDC120|p.A127Gfs*11|1|0.07|ENSG00000147144|chrX:49064422-49064423|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23193359375 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 17.754 1 16.443 15.943 16.943 -1.3109 0 0 0 0.21452 1 2859 2859 13.508 0.97634 1 + 8516 13279 5365 5369 8722 8722 -0.014418541082136471 EAEQLPKF 8 Unmodified _EAEQLPKF_ 0 0 0 REV__ENST00000489676.1_1_21:43732368-43733772:-|nuORF REV__ENST00000489676.1_1_21:43732368-43733772:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25372314453125 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 88.247 1 84.454 83.954 84.954 -3.7926 0 0 0 0.20462 1 17260 17260 21.747 0 1 + 8517 17397 5366 5370 8723 8723 0.00982078660570096 EAEQLPSR 8 Unmodified _EAEQLPSR_ 0 0 0 REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2369689941406 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 24.924 1 23.389 22.889 23.889 -1.5342 0 0 0 0.20895 1 4077 4077 18.146 0 1 + 8518 13013 5367 5371 8724 8724 -0.005682800046088232 EAEQLRAY 8 Unmodified _EAEQLRAY_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.255859375 2 490.245806 978.47706 0.46059 0.0002258 -0.12986 -6.3663E-05 0.33073 0.00016214 490.2457466413081 44.215 1.2421 44.215 43.397 44.639 0 49 35 2 0 0 0 0.62642 1 8308 8308 20.454 0 1 1176300 8519 7670 5368 5372 8725 8725 -0.013039934875791914 EAEQSDDY 8 Unmodified _EAEQSDDY_ 0 0 0 REV__nc|ENSG00000163629|Q12923-2|PTPN13 REV__nc|ENSG00000163629|Q12923-2|PTPN13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7419128417969 2 478.677619 955.340685 NaN NaN NaN NaN NaN NaN NaN 39.488 1 39.488 38.988 39.988 0 0 0 0 0.21486 1 7332 7332 9.3474 0 1 + 8520 17593 5369 5373 8726 8726 -0.13877152508757717 EAEQVQQQS 9 Unmodified _EAEQVQQQS_ 0 0 0 REV__ENSG00000152284|ENST00000282111|TCF7L1 REV__ENSG00000152284|ENST00000282111|TCF7L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6954345703125 2 523.741085 1045.46762 NaN NaN NaN NaN NaN NaN NaN 58.817 1 55.906 55.406 56.406 -2.9105 0 0 0 0.22962 1 11299 11299 14.838 0.93222 1 + 8521 17105 5370 5374 8727 8727 -0.05329806563759121 EAEQVRGLY 9 Unmodified _EAEQVRGLY_ 0 0 0 REV__ENSG00000085831|ENST00000680483|TTC39A REV__ENSG00000085831|ENST00000680483|TTC39A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2637939453125 2 532.772188 1063.52982 0.4526 0.00024113 -0.88887 -0.00047357 -0.43628 -0.00023244 532.7717360851949 53.768 0.3843 50.647 50.431 50.815 -3.1218 17 10 2 0 0 0 0.77734 1 9878 9878 19.257 0 1 2028700 + 8522 14478 5371 5375 8728 8728 0.0005996457523451681 EAERASEQ 8 Unmodified _EAERASEQ_ 0 0 0 REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2439270019531 2 460.209421 918.404288 0.57589 0.00026503 1.2359 0.00056878 1.8118 0.00083381 460.20988894840303 46.955 1.6114 46.955 46.139 47.751 0 118 45 3 0 0 0 8448 1 8881 8881 4.2837 0 1 7190400 + 8523 13974 5372 5376 8729 8729 -0.05817747280991625 EAERASEQ 8 Unmodified _EAERASEQ_ 0 0 0 REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.209421 918.404288 -0.21212 -9.762E-05 1.9024 0.00087548 1.6902 0.00077786 460.2102120140752 49.967 1.621 47.086 46.38 48.001 -2.8811 0.029919 0.00014601 NaN 4.2837 125 45 4 NaN NaN NaN NaN 0 NaN NaN 0 12819000 + 8524 13974 5372 5376 -0.05817747280991625 EAERASEQ 8 Unmodified _EAERASEQ_ 0 0 0 REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.209421 918.404288 -0.012914 -5.943E-06 1.7631 0.00081138 1.7501 0.00080543 460.21016974422395 50.135 1.8525 47.136 46.278 48.131 -2.999 0.079949 1.7806E-05 NaN 4.2837 144 53 4 NaN NaN NaN NaN 0 NaN NaN 0 19982000 + 8525 13974 5372 5376 -0.05817747280991625 EAERASEQ 8 Unmodified _EAERASEQ_ 0 0 0 REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 460.209421 918.404288 -0.073622 -3.3881E-05 1.927 0.00088681 1.8534 0.00085293 460.210241644782 50.055 1.6917 47.048 46.416 48.107 -3.0068 -0.0081233 0.00016868 NaN 4.2837 121 48 3 NaN NaN NaN NaN 0 NaN NaN 0 8693000 + 8526 13974 5372 5376 -0.05817747280991625 EAEREAKS 8 Unmodified _EAEREAKS_ 0 0 0 REV__ENSG00000174243|ENST00000308025|DDX23 REV__ENSG00000174243|ENST00000308025|DDX23 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.227294921875 2 460.227613 918.440674 NaN NaN NaN NaN NaN NaN NaN 45.087 1 45.087 44.587 45.587 0 0 0 0 0.21486 1 8468 8468 13.508 0 1 + 8527 18404 5373 5377 8730 8730 -0.021808703842907562 EAERITCMEY 10 Unmodified _EAERITCMEY_ 0 0 0 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.767822265625 2 622.767931 1243.52131 NaN NaN NaN NaN NaN NaN NaN 47.221 1 44.279 43.779 44.779 -2.9421 0 0 0 0.22588 1 8602 8602 6.7232 1.8262 1 8528 5984 5374 5378 8731 8731 -0.09071093447892054 EAERITCMEY 10 Unmodified _EAERITCMEY_ 0 0 0 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7675170898438 2 622.767931 1243.52131 NaN NaN NaN NaN NaN NaN NaN 31.535 1 29.387 28.887 29.887 -2.1483 0 0 0 0.22588 1 5436 5436 3.9444 0 1 8529 5984 5374 5378 8732 8732 -0.09071093447892054 EAERITCMEY 10 Unmodified _EAERITCMEY_ 0 0 0 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7719116210938 2 622.767931 1243.52131 NaN NaN NaN NaN NaN NaN NaN 57.658 1 54.453 53.953 54.953 -3.2052 0 0 0 0.22588 1 10746 10746 3.9444 0 1 8530 5984 5374 5378 8733 8733 -0.09071093447892054 EAERLNVV 8 Unmodified _EAERLNVV_ 0 0 0 REV__KIF27|p.K1223Tfs*2|1|0.11|ENSG00000165115|chr9:83842289-83842290|TT/-|frameshift_variant REV__KIF27|p.K1223Tfs*2|1|0.11|ENSG00000165115|chr9:83842289-83842290|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2581787109375 2 465.256174 928.497795 -0.033748 -1.5701E-05 -0.27419 -0.00012757 -0.30794 -0.00014327 465.25601911782445 47.634 0.63005 44.691 44.41 45.04 -2.9421 30 17 2 0 0 0 0.71876 1 8633 8633 11.64 0 1 9390000 + 8531 17740 5375 5379 8734 8734 0.030685968920806772 EAERLQGEL 9 Unmodified _EAERLQGEL_ 0 0 0 REV__ENSG00000023892|ENST00000316637|DEF6 REV__ENSG00000023892|ENST00000316637|DEF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.268798828125 2 522.769645 1043.52474 -0.18612 -9.7296E-05 0.50998 0.0002666 0.32386 0.00016931 522.7698321665439 64.973 0.58446 61.926 61.589 62.173 -3.047 26 16 2 0 0 0 0.45788 1 12580 12580 26.268 11.02 1 2461900 + 8532 13995 5376 5380 8735 8735 0.004716607126283634 EAERLQGEL 9 Unmodified _EAERLQGEL_ 0 0 0 REV__ENSG00000023892|ENST00000316637|DEF6 REV__ENSG00000023892|ENST00000316637|DEF6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 522.769645 1043.52474 -0.11771 -6.1533E-05 0.44787 0.00023413 0.33017 0.0001726 522.7698153310605 62.075 0.61338 62.075 61.768 62.381 0 0.11038 2.3249E-05 NaN 26.268 33 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1939300 + 8533 13995 5376 5380 0.004716607126283634 EAERLQGEL 9 Unmodified _EAERLQGEL_ 0 0 0 REV__ENSG00000023892|ENST00000316637|DEF6 REV__ENSG00000023892|ENST00000316637|DEF6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.769645 1043.52474 -0.42015 -0.00021964 1.0071 0.00052646 0.58691 0.00030682 522.770186411155 65.411 0.66905 61.953 61.609 62.278 -3.4581 -0.011281 0.0006079 NaN 26.268 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1892700 + 8534 13995 5376 5380 0.004716607126283634 EAERQLLA 8 Unmodified _EAERQLLA_ 0 0 0 BLK|p.T155Pfs*10|1|0.32|ENSG00000136573|chr8:11550251-11550251|A/-|frameshift_variant;BLK|p.R238Gfs*27|1|0.27|ENSG00000136573|chr8:11555420-11555420|C/-|frameshift_variant;ENSG00000136573|ENST00000259089|BLK BLK|p.T155Pfs*10|1|0.32|ENSG00000136573|chr8:11550251-11550251|A/-|frameshift_variant BLK|p.T155Pfs*10|1|0.32|ENSG00000136573|chr8:11550251-11550251|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2572937011719 2 465.256174 928.497795 0.029001 1.3493E-05 0.6438 0.00029953 0.67281 0.00031303 465.2563732617557 56.319 0.91235 53.129 52.846 53.759 -3.1895 33 25 2 0 0 0 0.59076 1 10396 10396 22.736 0 1 4210900 8535 322 5377 5381 8736 8736 0.030685968920806772 EAERREREQ 9 Unmodified _EAERREREQ_ 0 0 0 REV__CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant REV__CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2987060546875 2 601.797257 1201.57996 0.38199 0.00022988 -0.43225 -0.00026013 -0.050262 -3.0247E-05 601.796939480262 15.121 0.24459 14.007 13.887 14.131 -1.1142 15 6 3 0 0 0 0.52027 1 2307 2307 13.906 0 1 6134700 + 8536 13244 5378 5382 8737 8737 -0.012765327669285398 EAERRTKPT 9 Unmodified _EAERRTKPT_ 0 0 0 REV__ENSG00000254647|ENST00000381330|INS REV__ENSG00000254647|ENST00000381330|INS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7846069335938 2 544.296362 1086.57817 0.20616 0.00011221 -0.27111 -0.00014756 -0.064951 -3.5353E-05 544.2961852067197 34.506 0.44843 32.254 32.048 32.497 -2.2527 23 12 2 0 0 0 0.57121 1 6094 6094 1.2148 0.80657 1 1402400 + 8537 15977 5379 5383 8738 8738 0.038344582151466966 EAERWPCPP 9 Unmodified _EAERWPCPP_ 0 0 0 REV__ENST00000326094.4_1_9:88889119-88897452:-|nuORF REV__ENST00000326094.4_1_9:88889119-88897452:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.775390625 2 542.747659 1083.48076 0.2666 0.0001447 1.5525 0.0008426 1.8191 0.0009873 542.7484889371499 17.279 0.55913 17.279 17.03 17.589 0 42 15 4 0 0 0 0.57447 1 2766 2766 14.838 1.2234 1 8079000 + 8538 20578 5380 5384 8739 8739 -0.05763646985383275 EAERWTGA 8 Unmodified _EAERWTGA_ 0 0 0 REV__ENST00000263360.10_1_11:85955988-85956345:+|nuORF REV__ENST00000263360.10_1_11:85955988-85956345:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24462890625 2 460.217049 918.419545 NaN NaN NaN NaN NaN NaN NaN 18.017 1 18.017 17.517 18.517 0 0 0 0 0.21486 1 2878 2878 8.5933 0.68312 1 + 8539 20211 5381 5385 8740 8740 -0.04292835693138386 EAESDYCSG 9 Unmodified _EAESDYCSG_ 0 0 0 REV__ENST00000367559.7_1_1:182555006-182555042:-|nuORF REV__ENST00000367559.7_1_1:182555006-182555042:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2427062988281 2 480.666197 959.317841 0.073232 3.52E-05 1.8563 0.00089227 1.9296 0.00092747 480.6676038051889 53.235 0.77523 50.147 49.726 50.501 -3.0876 34 21 2 0 0 0 0.56709 1 9802 9802 2.6312 0 1 1041700 + 8540 20925 5382 5386 8741 8741 -0.16344494897873574 EAESRWRARN 10 Unmodified _EAESRWRARN_ 0 0 0 REV__ENST00000366774.3_1_6:170151529-170151580:-|nuORF REV__ENST00000366774.3_1_6:170151529-170151580:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2511901855469 3 425.549803 1273.62758 -0.37478 -0.00015949 -0.31122 -0.00013244 -0.686 -0.00029193 425.5496134865846 17.47 0.27779 16.159 15.995 16.273 -1.3109 12 7 2 0 0 0 0.91149 1 2784 2784 3.5871 0.95582 1 526160 + 8541 20904 5383 5387 8742 8742 0.0017116622395860759 EAESWKAV 8 Unmodified _EAESWKAV_ 0 0 0 REV__ENST00000471339.1_1_5:173036664-173040193:-|nuORF REV__ENST00000471339.1_1_5:173036664-173040193:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2297058105469 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 29.777 1 27.884 27.384 28.384 -1.8928 0 0 0 0.21452 1 5078 5078 13.508 0 1 + 8542 20487 5384 5388 8743 8743 -0.017787808905723068 EAETESYCD 9 Unmodified _EAETESYCD_ 0 0 0 REV__CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant REV__CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.685546875 2 523.684587 1045.35462 NaN NaN NaN NaN NaN NaN NaN 17.722 1 17.722 17.222 18.222 0 0 0 0 0.23508 1 2817 2817 4.3292 2.0265 1 + 8543 13457 5385 5389 8744 8744 -0.16624243071964884 EAETWDVCL 9 Unmodified _EAETWDVCL_ 0 0 0 ENSG00000124827|ENST00000379491|GCM2 ENSG00000124827|ENST00000379491|GCM2 ENSG00000124827|ENST00000379491|GCM2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2696533203125 2 533.231507 1064.44846 NaN NaN NaN NaN NaN NaN NaN 53.652 1 53.652 53.152 54.152 0 0 0 0 0.23508 1 10221 10221 11.64 0 1 8544 3336 5386 5390 8745 8745 -0.08118479179029237 EAEVFSTDFSN 11 Unmodified _EAEVFSTDFSN_ 0 0 0 nc|ENSG00000170054|Q86WD7-5|SERPINA9;nc|ENSG00000170054|Q86WD7-6|SERPINA9;ENSG00000170054|ENST00000674397|SERPINA9;nc|ENSG00000170054|Q86WD7-7|SERPINA9;nc|ENSG00000170054|Q86WD7-4|SERPINA9 nc|ENSG00000170054|Q86WD7-5|SERPINA9 nc|ENSG00000170054|Q86WD7-5|SERPINA9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7609252929688 2 623.267133 1244.51971 0.40246 0.00025084 2.7698 0.0017263 3.1722 0.0019772 623.2695984805424 63.371 0.17548 59.955 59.903 60.079 -3.4158 5 4 2 0 0 0 0.96058 1 11850 11850 7.609 1.8485 1 1210300 8545 6035 5387 5391 8746 8746 -0.09276687940655393 EAEVKPASV 9 Unmodified _EAEVKPASV_ 0 0 0 REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2504577636719 2 465.250557 928.486562 0.36036 0.00016766 -0.80513 -0.00037459 -0.44477 -0.00020693 465.2499564549402 71.928 0.4883 68.39 68.116 68.604 -3.5385 20 13 2 0 0 0 0.42844 1 13613 13613 24.021 4.5816 1 793500 + 8546 12988 5388 5392 8747 8747 0.01945774797957256 EAEVLALKMAE 11 Unmodified _EAEVLALKMAE_ 0 0 0 nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2 nc|ENSG00000186575|P35240-4|NF2 nc|ENSG00000186575|P35240-4|NF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2889404296875 2 602.318114 1202.62167 NaN NaN NaN NaN NaN NaN NaN 93.374 1 93.374 92.874 93.874 0 0 0 0 0.224 1 18270 18270 13.042 2.2185 1 8547 7067 5389 5393 8748 8748 0.02846886877387078 EAEVLQLK 8 Unmodified _EAEVLQLK_ 0 0 0 REV__ENSG00000011454|ENST00000373647|RABGAP1 REV__ENSG00000011454|ENST00000373647|RABGAP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2585754394531 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 64.662 1 61.204 60.704 61.704 -3.4581 0 0 0 0.20294 1 12089 12089 23.148 0 1 + 8548 13938 5390 5394 8749 8749 0.05582651694658125 EAEVPGAAVS 10 Unmodified _EAEVPGAAVS_ 0 0 0 ENST00000374897.2_1_6:32805996-32806552:-|nuORF ENST00000374897.2_1_6:32805996-32806552:-|nuORF ENST00000374897.2_1_6:32805996-32806552:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2412109375 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 88.368 1 88.368 87.868 88.868 0 0 0 0 0.22588 1 17248 17248 10.074 0.72649 1 8549 9231 5391 5395 8750 8750 -0.01691102098754982 EAEVVRVQ 8 Unmodified _EAEVVRVQ_ 0 0 0 REV__ENSG00000160460|ENST00000598249|SPTBN4 REV__ENSG00000160460|ENST00000598249|SPTBN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24090576171875 2 465.256174 928.497795 0.10396 4.8367E-05 0.041142 1.9142E-05 0.1451 6.7509E-05 465.2561819567488 53.761 1.3077 53.761 53.422 54.729 0 65 36 2 0 0 0 0.60622 1 10419 10419 21.747 3.6003 1 3925000 + 8550 17421 5392 5396 8751 8751 0.03068596892092046 EAEVVRVQ 8 Unmodified _EAEVVRVQ_ 0 0 0 REV__ENSG00000160460|ENST00000598249|SPTBN4 REV__ENSG00000160460|ENST00000598249|SPTBN4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2393493652344 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 57.251 1 54.061 53.561 54.561 -3.1895 0 0 0 0.21039 1 10627 10627 16.942 2.104 1 + 8551 17421 5392 5396 8752 8752 0.03068596892092046 EAEWYHRGSTF 11 Unmodified _EAEWYHRGSTF_ 0 0 0 REV__BTN1A1|p.V362A|1|0.32|ENSG00000124557|chr6:26508678-26508678|T/C|missense_variant REV__BTN1A1|p.V362A|1|0.32|ENSG00000124557|chr6:26508678-26508678|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5436096191406 3 461.542314 1381.60511 NaN NaN NaN NaN NaN NaN NaN 123.24 1 123.24 122.74 123.74 0 0 0 0 0.23491 1 24291 24291 4.4062 0.28952 1 + 8552 13220 5393 5397 8753 8753 -0.0704247796436448 EAEYEKCI 8 Carbamidomethyl (C) _EAEYEKC(Carbamidomethyl (C))I_ EAEYEKC(1)I EAEYEKC(40)I 0 1 0 REV__IQCK|p.E56V|1|0.33|ENSG00000174628|chr16:19718473-19718473|A/T|missense_variant REV__IQCK|p.E56V|1|0.33|ENSG00000174628|chr16:19718473-19718473|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.693603515625 2 521.231507 1040.44846 0.073714 3.8422E-05 -0.37602 -0.00019599 -0.30231 -0.00015757 521.2321637905452 97.439 3.529 93.519 92.987 96.517 -3.9194 311 102 6 0 0 0 0.25036 1 18723 18723 40.449 18.702 1 1590799999.9999998 + 8553 18425 5394 5398 8754 8754 22 -0.0701447917904261 EAEYHAKSMN 10 Unmodified _EAEYHAKSMN_ 0 0 0 REV__ENSG00000174842|ENST00000370360|GLMN REV__ENSG00000174842|ENST00000370360|GLMN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.257080078125 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 40.146 1 37.512 37.012 38.012 -2.6348 0 0 0 0.22588 1 7472 7472 5.7319 0.97584 1 + 8554 18434 5395 5399 8755 8755 -0.07948887027441742 EAFAQHVL 8 Unmodified _EAFAQHVL_ 0 0 0 ENST00000488222.5_1_7:45142883-45145249:-|nuORF;TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;ENSG00000136270|ENST00000258770|TBRG4 ENST00000488222.5_1_7:45142883-45145249:-|nuORF ENST00000488222.5_1_7:45142883-45145249:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2403869628906 2 457.74016 913.465767 0.25327 0.00011593 -0.70497 -0.00032269 -0.45171 -0.00020676 457.7401960640642 112.43 0.5874 112.43 112.08 112.66 0 23 16 2 0 0 0 0.58432 1 22126 22126 23.148 23.148 1 1655500 8555 3999 5396 5400 8756 8756 0.005572292089482289 EAFAQHVL 8 Unmodified _EAFAQHVL_ 0 0 0 ENST00000488222.5_1_7:45142883-45145249:-|nuORF;TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;ENSG00000136270|ENST00000258770|TBRG4 ENST00000488222.5_1_7:45142883-45145249:-|nuORF ENST00000488222.5_1_7:45142883-45145249:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2419738769531 2 457.74016 913.465767 -0.012062 -5.5214E-06 0.00017694 8.0992E-08 -0.011885 -5.4404E-06 457.7401800106926 116.43 0.69661 111.94 111.48 112.18 -4.486 33 19 2 0 0 0 0.58432 1 22979 22979 23.148 23.148 1 1687500 8556 3999 5396 5400 8757 8757 0.005572292089482289 EAFAQHVL 8 Unmodified _EAFAQHVL_ 0 0 0 ENST00000488222.5_1_7:45142883-45145249:-|nuORF;TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;ENSG00000136270|ENST00000258770|TBRG4 ENST00000488222.5_1_7:45142883-45145249:-|nuORF ENST00000488222.5_1_7:45142883-45145249:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2408752441406 2 457.74016 913.465767 0.48016 0.00021979 -0.76468 -0.00035003 -0.28453 -0.00013024 457.73997744916954 116.33 0.60242 111.97 111.6 112.2 -4.3585 26 16 2 0 0 0 0.9455 1 22433 22433 23.148 23.148 1 1530600 8557 3999 5396 5400 8758 8758 0.005572292089482289 EAFAQHVL 8 Unmodified _EAFAQHVL_ 0 0 0 ENST00000488222.5_1_7:45142883-45145249:-|nuORF;TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;ENSG00000136270|ENST00000258770|TBRG4 ENST00000488222.5_1_7:45142883-45145249:-|nuORF ENST00000488222.5_1_7:45142883-45145249:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 457.74016 913.465767 0.25327 0.00011593 -0.70497 -0.00032269 -0.45171 -0.00020676 457.7401960640642 112.43 0.5874 112.43 112.08 112.66 0 0 0 NaN 23.148 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1655500 8558 3999 5396 5400 0.005572292089482289 EAFAQHVL 8 Unmodified _EAFAQHVL_ 0 0 0 ENST00000488222.5_1_7:45142883-45145249:-|nuORF;TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;ENSG00000136270|ENST00000258770|TBRG4 ENST00000488222.5_1_7:45142883-45145249:-|nuORF ENST00000488222.5_1_7:45142883-45145249:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.74016 913.465767 -0.012062 -5.5214E-06 0.00017694 8.0992E-08 -0.011885 -5.4404E-06 457.7401800106926 116.43 0.69661 111.94 111.48 112.18 -4.486 -0.021559 0.0002773 NaN 23.148 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1687500 8559 3999 5396 5400 0.005572292089482289 EAFAQHVL 8 Unmodified _EAFAQHVL_ 0 0 0 ENST00000488222.5_1_7:45142883-45145249:-|nuORF;TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;ENSG00000136270|ENST00000258770|TBRG4 ENST00000488222.5_1_7:45142883-45145249:-|nuORF ENST00000488222.5_1_7:45142883-45145249:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 457.74016 913.465767 0.25653 0.00011742 -0.12567 -5.7523E-05 0.13086 5.99E-05 457.7401064280055 116.57 0.65916 111.99 111.52 112.18 -4.5815 0.019807 0.00016209 NaN 23.148 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1345100 8560 3999 5396 5400 0.005572292089482289 EAFDTELVG 9 Unmodified _EAFDTELVG_ 0 0 0 REV__ENSG00000160838|ENST00000337428|LRRC71 REV__ENSG00000160838|ENST00000337428|LRRC71 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26708984375 2 490.732197 979.449842 0.01221 5.9918E-06 -1.7128 -0.00084053 -1.7006 -0.00083454 490.7314147623981 107.84 0.79317 103.43 103.09 103.89 -4.4121 30 22 2 0 0 0 0.32428 1 20630 20630 30.225 6.2042 1 1205300 + 8561 17438 5397 5401 8759 8759 -0.040705218186189995 EAFFKLLPL 9 Unmodified _EAFFKLLPL_ 0 0 0 ENST00000326080.9_2_5:154199664-154199799:-|nuORF ENST00000326080.9_2_5:154199664-154199799:-|nuORF ENST00000326080.9_2_5:154199664-154199799:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20135498046875 3 359.882949 1076.62702 NaN NaN NaN NaN NaN NaN NaN 122.44 1 122.44 121.94 122.94 0 0 0 0 0.23508 1 24135 24135 11.495 0.6952 1 8562 8742 5398 5402 8760 8760 0.09176978522191348 EAFFNYKY 8 Unmodified _EAFFNYKY_ 0 0 0 ENST00000339431.8_1_7:102585067-102585361:+|nuORF ENST00000339431.8_1_7:102585067-102585361:+|nuORF ENST00000339431.8_1_7:102585067-102585361:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2628173828125 2 541.2531 1080.49165 NaN NaN NaN NaN NaN NaN NaN 81.691 1 81.691 81.191 82.191 0 0 0 0 0.21486 1 15913 15913 9.3474 0.75416 1 8563 8838 5399 5403 8761 8761 -0.045379213394198814 EAFGGYEEDY 10 Unmodified _EAFGGYEEDY_ 0 0 0 REV__nc|ENSG00000006282|Q8TB22-4|SPATA20 REV__nc|ENSG00000006282|Q8TB22-4|SPATA20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2724609375 2 590.227476 1178.4404 0.37071 0.0002188 0.02757 1.6272E-05 0.39828 0.00023508 590.2275005500725 48.392 0.45721 45.523 45.308 45.766 -2.869 22 12 2 0 0 0 0.664 1 9192 9192 14.838 0 1 2821800 + 8564 13872 5400 5404 8762 8762 -0.14168334894793588 EAFHLIKA 8 Unmodified _EAFHLIKA_ 0 0 0 ENSG00000136935|ENST00000373555|GOLGA1;ENST00000475407.5_2_9:127642811-127683993:-|nuORF ENSG00000136935|ENST00000373555|GOLGA1 ENSG00000136935|ENST00000373555|GOLGA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2408752441406 2 464.766178 927.517802 -0.096747 -4.4965E-05 0.61036 0.00028368 0.51362 0.00023871 464.766090682859 84.597 0.41673 80.933 80.71 81.127 -3.6641 15 11 2 0 0 0 0.19921 2 16526 16524;16526 54.774 24.549 1 594430 8565 4054 5401 5405 8763;8764 8764 0.051143926227155134 EAFIIDFFEE 10 Unmodified _EAFIIDFFEE_ 0 0 0 REV__nc|ENSG00000171595|Q9GZS0-2|DNAI2 REV__nc|ENSG00000171595|Q9GZS0-2|DNAI2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7744140625 2 630.295162 1258.57577 0.76066 0.00047944 -0.38641 -0.00024355 0.37425 0.00023589 630.2950504408434 55.593 0.5913 52.709 52.247 52.839 -2.8837 35 16 3 0 0 0 0.74842 1 10578 10578 6.2058 0 1 5108500 + 8566 18236 5402 5406 8765 8765 -0.043174350331810274 EAFKADEF 8 Unmodified _EAFKADEF_ 0 0 0 nc|ENSG00000188508|P60985-2|KRTDAP nc|ENSG00000188508|P60985-2|KRTDAP nc|ENSG00000188508|P60985-2|KRTDAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72216796875 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 19.022 1 19.022 18.522 19.522 0 0 0 0 0.21486 1 3089 3089 8.5933 0 1 8567 12530 5403 5407 8766 8766 -0.050784871274800025 EAFLEAEELE 10 Unmodified _EAFLEAEELE_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2761840820312 2 590.274426 1178.5343 NaN NaN NaN NaN NaN NaN NaN 32.336 1 32.336 31.836 32.836 0 0 0 0 0.22588 1 5871 5871 6.7232 0.51738 1 + 8568 14875 5404 5408 8767 8767 -0.04782615792555589 EAFNRNEM 8 Unmodified _EAFNRNEM_ 0 0 0 REV__tr|U7SSV8|U7SSV8_FUSNUDUF3307domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01391PE=4SV=1 REV__tr|U7SSV8|U7SSV8_FUSNUDUF3307domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01391PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.8166809082031 3 337.48352 1009.42873 0.063757 2.1517E-05 -0.20993 -7.0848E-05 -0.14617 -4.9331E-05 337.4834498638346 54.842 0.56463 51.707 51.499 52.063 -3.1352 21 15 2 0 0 0 8448 1 10183 10183 0.25148 0 1 4360300 + 8569 25071 5405 5409 8768 8768 -0.07560810399127149 EAFNRVPS 8 Unmodified _EAFNRVPS_ 0 0 0 ENST00000217939.6_1_X:3242847-3242904:-|nuORF ENST00000217939.6_1_X:3242847-3242904:-|nuORF ENST00000217939.6_1_X:3242847-3242904:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2347717285156 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 114.62 1 110.3 109.8 110.8 -4.3136 0 0 0 0.22647 1 22070 22070 1.7423 0.28721 1 8570 8122 5406 5410 8769 8769 -0.006559587964261482 EAFPESSY 8 Unmodified _EAFPESSY_ 0 0 0 ENSG00000166262|ENST00000299338|FAM227B;nc|ENSG00000166262|Q96M60-2|FAM227B;FAM227B|p.K294Nfs*12|1|0.09|ENSG00000166262|chr15:49508341-49508341|T/-|frameshift_variant;FAM227B|p.A319Hfs*6|1|0.52|ENSG00000166262|chr15:49508269-49508269|T/-|frameshift_variant ENSG00000166262|ENST00000299338|FAM227B ENSG00000166262|ENST00000299338|FAM227B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2400817871094 2 465.19799 928.381428 0.1286 5.9825E-05 0.2489 0.00011579 0.3775 0.00017561 465.198040716655 33.959 0.79718 33.959 33.616 34.413 0 43 22 3 0 0 0 0.89552 1 6291 6291 26.341 1.6674 1 2347000 8571 5709 5407 5411 8770 8770 -0.08562766398472377 EAFPEWEY 8 Unmodified _EAFPEWEY_ 0 0 0 REV__ENSG00000187720|ENST00000261862|THSD4 REV__ENSG00000187720|ENST00000261862|THSD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0729064941406 3 357.487035 1069.43928 -0.37193 -0.00013296 1.3689 0.00048936 0.99695 0.0003564 357.48753886891734 49.17 0.52661 46.289 46.029 46.556 -2.8811 21 14 2 0 0 0 1.0265 1 9353 9353 1.6526 0 1 1549200 + 8572 19106 5408 5412 8771 8771 -0.09266504473043824 EAFPLLTE 8 Unmodified _EAFPLLTE_ 0 0 0 REV__ENST00000487114.1_1_1:36644989-36645856:+|nuORF REV__ENST00000487114.1_1_1:36644989-36645856:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2406311035156 2 460.242201 918.469849 NaN NaN NaN NaN NaN NaN NaN 38.442 1 35.893 35.393 36.393 -2.5491 0 0 0 0.23749 1 7126 7126 0.0082765 0 1 + 8573 15504 5409 5413 8772 8772 0.00735273912005141 EAFPRVNP 8 Unmodified _EAFPRVNP_ 0 0 0 ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2;LCMT2|p.F452Lfs*11|2|0.18|ENSG00000168806|chr15:43329134-43329134|A/-|frameshift_variant ENST00000567039.1_1_15:43620629-43622752:-|nuORF ENST00000567039.1_1_15:43620629-43622752:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2450256347656 2 465.245609 928.476666 -0.05889 -2.7399E-05 0.90715 0.00042205 0.84826 0.00039465 465.24564643431074 51.532 0.80581 48.481 48.027 48.833 -3.0517 62 22 4 0 0 0 0.66265 1 9425 9425 18.135 1.1927 1 2781800 8574 5936 5410 5414 8773 8773 0.009566315832330474 EAFRKFLM 8 Unmodified _EAFRKFLM_ 0 0 0 ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C;DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C ENST00000380437.8_1_9:19290781-19335045:+|nuORF ENST00000380437.8_1_9:19290781-19335045:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2775268554688 2 521.281137 1040.54772 0.53289 0.00027778 0.97655 0.00050906 1.5094 0.00078684 521.2816114899605 45.933 0.69386 45.933 45.621 46.315 0 51 19 3 0 0 0 0.71876 1 8600 8600 11.64 6.4096 1 7112100 8575 816 5411 5415 8774 8774 0.02907008296369895 EAFRVRKG 8 Unmodified _EAFRVRKG_ 0 0 0 REV__ENSG00000146909|ENST00000275820|NOM1 REV__ENSG00000146909|ENST00000275820|NOM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7784118652344 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 52.181 1 49.13 48.63 49.63 -3.0517 0 0 0 0.23487 1 9628 9628 0.30703 0 1 + 8576 16910 5412 5416 8775 8775 0.06343715602804423 EAFTSDQEL 9 Unmodified _EAFTSDQEL_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2825317382812 2 520.232561 1038.45057 0.52337 0.00027228 -0.80523 -0.00041891 -0.28186 -0.00014663 520.2320880581901 45.577 1.7738 45.577 44.99 46.764 0 195 50 6 0 0 0 0.68435 1 8475 8475 7.2892 0 1 129850000 + 8577 18798 5413 5417 8776 8776 -0.06711727169567894 EAFVPIFTY 9 Unmodified _EAFVPIFTY_ 0 0 0 MLN|p.E34K|1|0.31|ENSG00000096395|chr6:33801064-33801064|C/T|missense_variant;nc|ENSG00000096395|P12872-2|MLN;nc|ENSG00000096395|P12872-3|MLN;ENSG00000096395|ENST00000430124|MLN MLN|p.E34K|1|0.31|ENSG00000096395|chr6:33801064-33801064|C/T|missense_variant MLN|p.E34K|1|0.31|ENSG00000096395|chr6:33801064-33801064|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7809448242188 2 543.778951 1085.54335 NaN NaN NaN NaN NaN NaN NaN 20.319 1 18.923 18.423 19.423 -1.3966 0 0 0 0.23508 1 3391 3391 11.64 4.0313 1 8578 1875 5414 5418 8777 8777 0.0039982235448405845 EAFVPIFTY 9 Unmodified _EAFVPIFTY_ 0 0 0 MLN|p.E34K|1|0.31|ENSG00000096395|chr6:33801064-33801064|C/T|missense_variant;nc|ENSG00000096395|P12872-2|MLN;nc|ENSG00000096395|P12872-3|MLN;ENSG00000096395|ENST00000430124|MLN MLN|p.E34K|1|0.31|ENSG00000096395|chr6:33801064-33801064|C/T|missense_variant MLN|p.E34K|1|0.31|ENSG00000096395|chr6:33801064-33801064|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7808837890625 2 543.778951 1085.54335 -0.24281 -0.00013204 3.3108 0.0018003 3.0679 0.0016683 543.7806681738049 20.236 0.24573 18.871 18.726 18.972 -1.3652 10 6 2 0 0 0 0.62102 1 3122 3122 11.64 2.8949 1 348230 8579 1875 5414 5418 8778 8778 0.0039982235448405845 EAFVPIFTY 9 Unmodified _EAFVPIFTY_ 0 0 0 MLN|p.E34K|1|0.31|ENSG00000096395|chr6:33801064-33801064|C/T|missense_variant;nc|ENSG00000096395|P12872-2|MLN;nc|ENSG00000096395|P12872-3|MLN;ENSG00000096395|ENST00000430124|MLN MLN|p.E34K|1|0.31|ENSG00000096395|chr6:33801064-33801064|C/T|missense_variant MLN|p.E34K|1|0.31|ENSG00000096395|chr6:33801064-33801064|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7803344726562 2 543.778951 1085.54335 -0.023335 -1.2689E-05 2.8282 0.0015379 2.8048 0.0015252 543.7802177671382 43.561 0.63787 40.795 40.685 41.323 -2.7661 21 17 2 0 0 0 0.54354 1 7931 7931 16.942 0.37642 1 893470 8580 1875 5414 5418 8779 8779 0.0039982235448405845 EAFVPIFTY 9 Unmodified _EAFVPIFTY_ 0 0 0 MLN|p.E34K|1|0.31|ENSG00000096395|chr6:33801064-33801064|C/T|missense_variant;nc|ENSG00000096395|P12872-2|MLN;nc|ENSG00000096395|P12872-3|MLN;ENSG00000096395|ENST00000430124|MLN MLN|p.E34K|1|0.31|ENSG00000096395|chr6:33801064-33801064|C/T|missense_variant MLN|p.E34K|1|0.31|ENSG00000096395|chr6:33801064-33801064|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7800903320312 2 543.778951 1085.54335 NaN NaN NaN NaN NaN NaN NaN 44.112 1 41.364 40.864 41.864 -2.7475 0 0 0 0.23508 1 7977 7977 12.532 0.89125 1 8581 1875 5414 5418 8780 8780 0.0039982235448405845 EAFWGPSWL 9 Unmodified _EAFWGPSWL_ 0 0 0 REV__ENST00000479427.5_1_2:242334894-242335056:+|nuORF REV__ENST00000479427.5_1_2:242334894-242335056:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.19451904296875 3 364.843154 1091.50763 -0.63966 -0.00023338 0.18145 6.6201E-05 -0.45821 -0.00016717 364.8431959492459 37.481 0.99962 35.012 34.223 35.223 -2.4688 38 28 2 0 0 0 0.6226 1 6790 6790 4.897 1.6157 1 875040 + 8582 22152 5415 5419 8781 8781 -0.03446215102530914 EAFWGPSWL 9 Unmodified _EAFWGPSWL_ 0 0 0 REV__ENST00000479427.5_1_2:242334894-242335056:+|nuORF REV__ENST00000479427.5_1_2:242334894-242335056:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 364.843154 1091.50763 -0.2132 -7.7785E-05 -0.41836 -0.00015264 -0.63156 -0.00023042 364.84295978277294 35.292 0.86301 35.292 34.587 35.45 0 0.13985 -0.00031043 NaN 4.897 46 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1806300 + 8583 22152 5415 5419 -0.03446215102530914 EAGADPSLR 9 Unmodified _EAGADPSLR_ 0 0 0 ENSG00000154065|ENST00000592179|ANKRD29 ENSG00000154065|ENST00000592179|ANKRD29 ENSG00000154065|ENST00000592179|ANKRD29 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.228271484375 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.46 1 42.46 41.96 42.96 0 0 0 0 0.22193 1 7943 7943 17.113 2.2746 1 8584 4992 5416 5420 8782 8782 -0.014885665216752386 EAGAHTRDP 9 Unmodified _EAGAHTRDP_ 0 0 0 REV__ENST00000268035.10_1_15:99503820-99504300:+|nuORF REV__ENST00000268035.10_1_15:99503820-99504300:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7297058105469 2 477.225405 952.436257 0.66782 0.0003187 1.0318 0.00049241 1.6997 0.00081112 477.22586477972584 29.094 0.91533 27.137 26.774 27.689 -1.9561 74 25 4 0 0 0 0.58804 1 5221 5221 13.906 2.7916 1 16456000 + 8585 20260 5417 5421 8783 8783 -0.04186334807195635 EAGALLLCEPA 11 Unmodified _EAGALLLCEPA_ 0 0 0 LIPT2|p.G191Qfs*9|1|0.05|ENSG00000175536|chr11:74492261-74492262|-/GACTTGA|frameshift_variant;ENSG00000175536|ENST00000310109|LIPT2 LIPT2|p.G191Qfs*9|1|0.05|ENSG00000175536|chr11:74492261-74492262|-/GACTTGA|frameshift_variant LIPT2|p.G191Qfs*9|1|0.05|ENSG00000175536|chr11:74492261-74492262|-/GACTTGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7805786132812 2 543.778625 1085.5427 NaN NaN NaN NaN NaN NaN NaN 43.654 1 40.907 40.407 41.407 -2.7475 0 0 0 0.15347 1 7887 7887 27.629 4.8925 1 8586 6419 5418 5422 8784 8784 0.003346596431129001 EAGAMGEVR 9 Unmodified _EAGAMGEVR_ 0 0 0 REV__ENST00000472108.1_1_9:132641664-132642549:+|nuORF REV__ENST00000472108.1_1_9:132641664-132642549:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2408447265625 2 460.218734 918.422915 NaN NaN NaN NaN NaN NaN NaN 57.222 1 54.046 53.546 54.546 -3.1761 0 0 0 0.22621 1 10662 10662 15.847 1.2655 1 + 8587 22050 5419 5423 8785 8785 -0.03955908910779726 EAGAQCHTG 9 Unmodified _EAGAQCHTG_ 0 0 0 REV__ENST00000444228.2_1_16:31405642-31419232:+|nuORF REV__ENST00000444228.2_1_16:31405642-31419232:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2274169921875 2 437.179609 872.344665 NaN NaN NaN NaN NaN NaN NaN 73.342 1 70.031 69.531 70.531 -3.3107 0 0 0 0.19162 1 14299 14299 2.6312 0.88896 1 + 8588 21735 5420 5424 8786 8786 -0.09661341496030218 EAGASRELF 9 Unmodified _EAGASRELF_ 0 0 0 REV__ENST00000567909.1_1_16:58426604-58427511:+|nuORF REV__ENST00000567909.1_1_16:58426604-58427511:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26983642578125 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 122.01 1 117.48 116.98 117.98 -4.5305 0 0 0 0.22251 1 23490 23490 16.942 1.0951 1 + 8589 18748 5421 5425 8787 8787 -0.013039934875791914 EAGATVNLAA 10 Unmodified _EAGATVNLAA_ 0 0 0 ENSG00000161664|ENST00000293414|ASB16 ENSG00000161664|ENST00000293414|ASB16 ENSG00000161664|ENST00000293414|ASB16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23760986328125 2 458.740357 915.46616 -0.075941 -3.4837E-05 0.186 8.5327E-05 0.11006 5.0489E-05 458.7404054987602 45.118 0.64101 42.252 41.912 42.553 -2.8653 31 17 2 0 0 0 0.84281 1 8234 8234 19.257 6.2145 1 1056900 8590 5296 5422 5426 8788 8788 0.005046041381206123 EAGATVNLAA 10 Unmodified _EAGATVNLAA_ 0 0 0 ENSG00000161664|ENST00000293414|ASB16 ENSG00000161664|ENST00000293414|ASB16 ENSG00000161664|ENST00000293414|ASB16 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.740357 915.46616 -0.10802 -4.9552E-05 0.25597 0.00011742 0.14795 6.7873E-05 458.74033000373566 44.924 0.60734 42.134 41.847 42.455 -2.79 -0.10573 9.6432E-05 NaN 19.257 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1116500 8591 5296 5422 5426 0.005046041381206123 EAGCPAGRL 9 Unmodified _EAGCPAGRL_ 0 0 0 nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2168884277344 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 79.623 1 79.623 79.123 80.123 0 0 0 0 0.23508 1 15495 15495 12.532 1.4171 1 8592 12543 5423 5427 8789 8789 -0.023875877025943737 EAGCQLVPL 9 Unmodified _EAGCQLVPL_ 0 0 0 ENST00000216468.7_1_14:77807904-77808090:-|nuORF ENST00000216468.7_1_14:77807904-77808090:-|nuORF ENST00000216468.7_1_14:77807904-77808090:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2532958984375 2 465.241678 928.468803 0.12224 5.6872E-05 -0.093602 -4.3547E-05 0.028641 1.3325E-05 465.2416869779963 118.52 0.70629 118.52 118.11 118.82 0 27 19 2 0 0 0 0.45972 1 23404 23404 6.4869 5.8055 1 1595600 8593 8115 5424 5428 8790 8790 0.001707362714341798 EAGCQLVPL 9 Unmodified _EAGCQLVPL_ 0 0 0 ENST00000216468.7_1_14:77807904-77808090:-|nuORF ENST00000216468.7_1_14:77807904-77808090:-|nuORF ENST00000216468.7_1_14:77807904-77808090:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2501220703125 2 465.241678 928.468803 0.42451 0.0001975 -0.6947 -0.00032321 -0.27019 -0.0001257 465.2414026883363 123.31 0.77834 118.58 118.15 118.93 -4.731 43 21 3 0 0 0 0.60061 1 23617 23617 13.042 1.4022 1 1344200 8594 8115 5424 5428 8791 8791 0.001707362714341798 EAGDNPRLAT 10 Unmodified _EAGDNPRLAT_ 0 0 0 REV__nc|ENSG00000187634|Q96NU1-1|SAMD11 REV__nc|ENSG00000187634|Q96NU1-1|SAMD11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.25927734375 2 522.259445 1042.50434 0.57062 0.00029801 -0.82755 -0.0004322 -0.25693 -0.00013418 522.2589819944774 29.76 0.69345 27.686 27.381 28.074 -2.0743 50 19 4 0 0 0 0.53552 1 5123 5123 22.736 1.1993 1 5690100 + 8595 19101 5425 5429 8792 8792 -0.015215099471788562 EAGDSQGPDQ 10 Unmodified _EAGDSQGPDQ_ 0 0 0 REV__RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant REV__RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 502.2974548339844 2 502.201793 1002.38903 -0.070286 -3.5298E-05 -1.2918 -0.00064876 -1.3621 -0.00068406 502.2010924347558 75.606 0.65625 72.191 71.885 72.541 -3.4151 29 18 2 0 0 0 0.49448 1 14743 14743 0.20733 0 1 1893900 + 8596 18846 5426 5430 8793 8793 -0.11206658868843533 EAGEEQKK 8 Unmodified _EAGEEQKK_ 0 0 0 REV__TTF2|p.K619Rfs*10|1|0.36|ENSG00000116830|chr1:117081896-117081896|A/-|frameshift_variant REV__TTF2|p.K619Rfs*10|1|0.36|ENSG00000116830|chr1:117081896-117081896|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2355651855469 2 459.729989 917.445425 0.07448 3.4241E-05 0.49796 0.00022893 0.57245 0.00026317 459.73005880080746 40.782 0.70155 38.292 38.006 38.708 -2.4896 43 19 4 0 0 0 0.56049 1 7253 7253 24.674 0 1 1714000 + 8597 15501 5427 5431 8794 8794 -0.01659986241520528 EAGEISFY 8 Unmodified _EAGEISFY_ 0 0 0 ENSG00000162722|ENST00000366481|TRIM58 ENSG00000162722|ENST00000366481|TRIM58 ENSG00000162722|ENST00000366481|TRIM58 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2203369140625 2 458.208358 914.402163 NaN NaN NaN NaN NaN NaN NaN 46.007 1 43.14 42.64 43.64 -2.8666 0 0 0 0.19492 1 8363 8363 26.341 4.5946 1 8598 5358 5428 5432 8795 8795 -0.05846176018803817 EAGEQLHM 8 Unmodified _EAGEQLHM_ 0 0 0 ENST00000490203.5_1_1:201979803-201981353:+|nuORF;ENST00000495848.1_1_1:201979803-201981353:+|nuORF ENST00000490203.5_1_1:201979803-201981353:+|nuORF ENST00000490203.5_1_1:201979803-201981353:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2244567871094 2 457.70546 913.396366 -0.11967 -5.4776E-05 0.7237 0.00033124 0.60402 0.00027646 457.70578161430706 46.07 0.55209 43.229 42.969 43.521 -2.8409 24 15 2 0 0 0 8448 1 8699 8699 2.643 1.7981 1 1039800 8599 10511 5429 5433 8796 8796 -0.06379597802117587 EAGERERNGW 10 Unmodified _EAGERERNGW_ 0 0 0 ENST00000429541.6_1_11:3392284-3398995:-|nuORF ENST00000429541.6_1_11:3392284-3398995:-|nuORF ENST00000429541.6_1_11:3392284-3398995:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.279541015625 2 602.2787 1202.54285 NaN NaN NaN NaN NaN NaN NaN 52.864 1 49.769 49.269 50.269 -3.0954 0 0 0 0.22588 1 9766 9766 6.2058 0 1 8600 9762 5430 5434 8797 8797 -0.05032204312669819 EAGERVRV 8 Unmodified _EAGERVRV_ 0 0 0 ENST00000478899.1_1_1:156707192-156707995:-|nuORF;ENSG00000143314|ENST00000361531|MRPL24 ENST00000478899.1_1_1:156707192-156707995:-|nuORF ENST00000478899.1_1_1:156707192-156707995:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23974609375 2 458.253966 914.493378 NaN NaN NaN NaN NaN NaN NaN 51.841 1 48.79 48.29 49.29 -3.0517 0 0 0 0.21039 1 9559 9559 16.942 2.3606 1 8601 4471 5431 5435 8798 8798 0.032711324691945265 EAGETYRGKA 10 Unmodified _EAGETYRGKA_ 0 0 0 REV__ENSG00000173213|ENST00000308911|TUBB8B REV__ENSG00000173213|ENST00000308911|TUBB8B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2728271484375 2 541.26727 1080.51999 0.48312 0.0002615 0.56669 0.00030673 1.0498 0.00056823 541.2674637477453 28.978 0.21399 26.982 26.829 27.043 -1.9962 7 5 2 0 0 0 0.84281 1 4879 4879 9.3831 0 1 352080 + 8602 18338 5432 5436 8799 8799 -0.01705223430121805 EAGEWFGWPT 10 Unmodified _EAGEWFGWPT_ 0 0 0 REV__ENST00000481053.5_1_9:139256466-139257898:-|nuORF REV__ENST00000481053.5_1_9:139256466-139257898:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.25732421875 2 590.258914 1178.50327 NaN NaN NaN NaN NaN NaN NaN 27.175 1 25.253 24.753 25.753 -1.9222 0 0 0 0.22588 1 4530 4530 6.7232 1.9672 1 + 8603 22171 5433 5437 8800 8800 -0.07883724316093321 EAGFDWVYY 9 Unmodified _EAGFDWVYY_ 0 0 0 DHH|p.A166T|1|0.33|ENSG00000139549|chr12:49091197-49091197|C/T|missense_variant;IHH|p.R253*|1|0.66|ENSG00000163501|chr2:219055683-219055686|GCCT/-|frameshift_variant;IHH|p.P266Hfs*99|2|0.37|ENSG00000163501|chr2:219055646-219055646|G/-|frameshift_variant;IHH|p.Q386Sfs*11|1|0.4|ENSG00000163501|chr2:219055287-219055287|G/-|frameshift_variant;IHH|p.E379Rfs*18|2|0.25|ENSG00000163501|chr2:219055308-219055308|C/-|frameshift_variant;ENSG00000139549|ENST00000649637|DHH;ENSG00000163501|ENST00000295731|IHH;ENSG00000164690|ENST00000297261|SHH DHH|p.A166T|1|0.33|ENSG00000139549|chr12:49091197-49091197|C/T|missense_variant DHH|p.A166T|1|0.33|ENSG00000139549|chr12:49091197-49091197|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3133544921875 2 575.248015 1148.48148 -0.051906 -2.9859E-05 -0.16228 -9.335E-05 -0.21418 -0.00012321 575.2476382068917 67.115 0.38652 64.006 63.826 64.213 -3.1086 18 10 3 0 0 0 0.73309 1 13033 13033 4.756 0 1 1464300 8604 825 5434 5438 8801 8801 -0.08682529064662958 EAGFEITGR 9 Unmodified _EAGFEITGR_ 0 0 0 REV__ENST00000462639.1_1_X:23803380-23803605:+|nuORF REV__ENST00000462639.1_1_X:23803380-23803605:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2666015625 2 490.245806 978.47706 0.395 0.00019365 0.072441 3.5514E-05 0.46744 0.00022916 490.2458813713439 41.947 0.7678 41.947 41.583 42.351 0 44 21 3 0 0 0 0.42844 1 7901 7901 24.021 4.5816 1 9503100 + 8605 21906 5435 5439 8802 8802 -0.013039934875678227 EAGFLHLS 8 Unmodified _EAGFLHLS_ 0 0 0 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22528076171875 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 25.642 1 24.007 23.507 24.507 -1.6347 0 0 0 0.2074 1 4222 4222 19.439 3.5918 1 + 8606 25302 5436 5440 8803 8803 -0.0021045968237558554 EAGFLHLS 8 Unmodified _EAGFLHLS_ 0 0 0 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2275085449219 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 57.881 1 54.629 54.129 55.129 -3.2517 0 0 0 0.2074 1 10749 10749 19.439 5.9311 1 + 8607 25302 5436 5440 8804 8804 -0.0021045968237558554 EAGFRAPPA 9 Unmodified _EAGFRAPPA_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2400207519531 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 47.953 1 45.084 44.584 45.584 -2.869 0 0 0 0.1761 1 9068 9068 26.884 4.1474 1 8608 7616 5437 5441 8805 8805 0.00036345066178000707 EAGFRAPPA 9 Unmodified _EAGFRAPPA_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000481093.1_1_12:111085463-111085694:+|nuORF;ENST00000397656.8_1_12:111066004-111085694:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2396240234375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 48.148 1 45.198 44.698 45.698 -2.9499 0 0 0 0.10202 1 8809 8809 37.974 3.5723 1 8609 7616 5437 5441 8806 8806 0.00036345066178000707 EAGFYDLD 8 Unmodified _EAGFYDLD_ 0 0 0 tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1 tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1 tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698913574219 3 310.467752 928.381428 -0.486 -0.00015089 0.55724 0.000173 0.071235 2.2116E-05 310.4677977590008 33.995 0.52126 33.995 33.69 34.212 0 18 14 2 0 0 0 1.0271 1 6218 6218 1.6526 0.17072 1 629980 8610 25892 5438 5442 8807 8807 -0.08562766398472377 EAGGAWLAQIA 11 Unmodified _EAGGAWLAQIA_ 0 0 0 REV__nc|ENSG00000106123|O15197-2|EPHB6 REV__nc|ENSG00000106123|O15197-2|EPHB6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7794799804688 2 543.782556 1085.55056 0.34364 0.00018687 -3.0524 -0.0016598 -2.7087 -0.001473 543.7789202331065 63.584 0.2402 60.328 60.157 60.398 -3.2567 11 6 2 0 0 0 0.6353 1 11918 11918 16.149 0 1 969680 + 8611 15033 5439 5443 8808 8808 0.01120554954900399 EAGGGGGA 8 Unmodified _EAGGGGGA_ 0 0 0 ENSG00000095015|ENST00000399503|MAP3K1;ENST00000453744.6_1_4:103748709-103748769:-|nuORF ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3110961914062 1 575.24198 574.234704 0.042916 2.4687E-05 -1.0331 -0.00059427 -0.99016 -0.00056958 575.2422773773238 63.017 0.44145 60.019 59.844 60.285 -2.9975 15 12 2 0 0 0 0.73426 1 12162 12162 9.3474 0 1 1562600 8612 1851 5440 5444 8809 8809 -0.06944398772907334 EAGGPKATGQ 10 Unmodified _EAGGPKATGQ_ 0 0 0 BAHCC1|p.E1169K|1|0.17|ENSG00000266074|chr17:81447284-81447284|G/A|missense_variant BAHCC1|p.E1169K|1|0.17|ENSG00000266074|chr17:81447284-81447284|G/A|missense_variant BAHCC1|p.E1169K|1|0.17|ENSG00000266074|chr17:81447284-81447284|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2303466796875 2 458.230156 914.445759 0.23693 0.00010857 0.41523 0.00019027 0.65217 0.00029884 458.2303358065298 20.392 0.53382 20.392 20.134 20.668 0 26 14 2 0 0 0 0.32535 1 3348 3348 3.5927 1.8504 1 4422100 8613 295 5441 5445 8810 8810 -0.014885665216752386 EAGGPKATGQ 10 Unmodified _EAGGPKATGQ_ 0 0 0 BAHCC1|p.E1169K|1|0.17|ENSG00000266074|chr17:81447284-81447284|G/A|missense_variant BAHCC1|p.E1169K|1|0.17|ENSG00000266074|chr17:81447284-81447284|G/A|missense_variant BAHCC1|p.E1169K|1|0.17|ENSG00000266074|chr17:81447284-81447284|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2288513183594 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 67.006 1 63.898 63.398 64.398 -3.1086 0 0 0 0.22566 1 12993 12993 16.149 0.30192 1 8614 295 5441 5445 8811 8811 -0.014885665216752386 EAGGPKATGQ 10 Unmodified _EAGGPKATGQ_ 0 0 0 BAHCC1|p.E1169K|1|0.17|ENSG00000266074|chr17:81447284-81447284|G/A|missense_variant BAHCC1|p.E1169K|1|0.17|ENSG00000266074|chr17:81447284-81447284|G/A|missense_variant BAHCC1|p.E1169K|1|0.17|ENSG00000266074|chr17:81447284-81447284|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2307434082031 2 458.230156 914.445759 -0.21896 -0.00010034 0.44789 0.00020524 0.22893 0.0001049 458.23033238578546 21.613 0.45533 20.228 20.072 20.527 -1.3847 23 12 2 0 0 0 0.25854 1 3395 3395 3.5927 1.8504 1 2670200 8615 295 5441 5445 8812 8812 -0.014885665216752386 EAGGSVIHPL 10 Unmodified _EAGGSVIHPL_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2528076171875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 34.095 1 31.88 31.38 32.38 -2.2158 0 0 0 0.22588 1 5963 5963 10.074 1.3285 1 8616 2900 5442 5446 8813 8813 0.023328834091330464 EAGHLDEPLT 10 Unmodified _EAGHLDEPLT_ 0 0 0 ENST00000399824.6_2_22:30757952-30758048:+|nuORF ENST00000399824.6_2_22:30757952-30758048:+|nuORF ENST00000399824.6_2_22:30757952-30758048:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2744140625 2 541.261653 1080.50875 0.27608 0.00014943 1.1477 0.00062121 1.4238 0.00077064 541.2625290809766 64.827 0.63358 61.369 60.837 61.471 -3.4581 19 17 2 0 0 0 0.67319 1 12115 12115 13.906 0.86358 1 1141200 8617 9502 5443 5447 8814 8814 -0.028280455243020697 EAGHLLGWP 9 Unmodified _EAGHLLGWP_ 0 0 0 REV__ENST00000589036.1_1_17:39927815-39942960:-|nuORF REV__ENST00000589036.1_1_17:39927815-39942960:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.255859375 2 490.253434 978.492316 NaN NaN NaN NaN NaN NaN NaN 122.48 1 122.48 121.98 122.98 0 0 0 0 0.22251 1 24142 24142 16.942 2.3606 1 + 8618 23305 5444 5448 8815 8815 0.0022091810029678527 EAGHLLGWP 9 Unmodified _EAGHLLGWP_ 0 0 0 REV__ENST00000589036.1_1_17:39927815-39942960:-|nuORF REV__ENST00000589036.1_1_17:39927815-39942960:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2533264160156 2 490.253434 978.492316 NaN NaN NaN NaN NaN NaN NaN 117.35 1 112.99 112.49 113.49 -4.3585 0 0 0 0.20628 1 22587 22587 21.747 0 1 + 8619 23305 5444 5448 8816 8816 0.0022091810029678527 EAGHLLGWPD 10 Unmodified _EAGHLLGWPD_ 0 0 0 REV__ENST00000589036.1_1_17:39927815-39942960:-|nuORF REV__ENST00000589036.1_1_17:39927815-39942960:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7703247070312 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 17.298 1 17.298 16.798 17.798 0 0 0 0 0.22583 1 2733 2733 13.906 0 1 + 8620 23305 5445 5449 8817 8817 -0.023760180791668972 EAGHWHQW 8 Unmodified _EAGHWHQW_ 0 0 0 REV__nc|ENSG00000163617|Q8NCU4-2|CCDC191 REV__nc|ENSG00000163617|Q8NCU4-2|CCDC191 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 351.23712158203125 3 350.822864 1049.44676 -0.39308 -0.0001379 -1.0334 -0.00036254 -1.4265 -0.00050044 350.82241382617343 35.975 0.31505 33.699 33.56 33.875 -2.2766 11 8 2 0 0 0 1.0265 1 6326 6326 3.9444 0.068064 1 444130 + 8621 17590 5446 5450 8818 8818 -0.07598307362104606 EAGIHKALEN 10 Unmodified _EAGIHKALEN_ 0 0 0 ENST00000522590.1_1_6:154480965-154534056:-|nuORF;nc|ENSG00000074706|Q8WWN9|IPCEF1;ENSG00000074706|ENST00000367220|IPCEF1;nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3 ENST00000522590.1_1_6:154480965-154534056:-|nuORF ENST00000522590.1_1_6:154480965-154534056:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2842407226562 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 34.076 1 31.929 31.429 32.429 -2.1468 0 0 0 0.22552 1 5966 5966 18.146 3.3081 1 8622 1502 5447 5451 8819 8819 0.019316534665676954 EAGINFMVYRP 11 Unmodified _EAGINFMVYRP_ 0 0 0 MRPL18|p.Q147R|1|0.49|ENSG00000112110|chr6:159797487-159797487|A/G|missense_variant MRPL18|p.Q147R|1|0.49|ENSG00000112110|chr6:159797487-159797487|A/G|missense_variant MRPL18|p.Q147R|1|0.49|ENSG00000112110|chr6:159797487-159797487|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 432.8617858886719 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 30.312 1 28.196 27.696 28.696 -2.1167 0 0 0 0.23698 1 5471 5471 1.2148 0 1 8623 12160 5448 5452 8820 8820 -0.0027487130862482445 EAGIPEFYDY 10 Unmodified _EAGIPEFYDY_ 0 0 0 ENSG00000243649|ENST00000425368|CFB ENSG00000243649|ENST00000425368|CFB ENSG00000243649|ENST00000425368|CFB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2901000976562 2 602.263862 1202.51317 NaN NaN NaN NaN NaN NaN NaN 27.019 1 25.097 24.597 25.597 -1.9222 0 0 0 0.22588 1 4496 4496 3.9444 0 1 8624 7872 5449 5453 8821 8821 -0.07998581101378477 EAGIRAPLSP 10 Unmodified _EAGIRAPLSP_ 0 0 0 nc|ENSG00000186810|P49682-3|CXCR3 nc|ENSG00000186810|P49682-3|CXCR3 nc|ENSG00000186810|P49682-3|CXCR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.0208740234375 3 337.525825 1009.55564 -0.33845 -0.00011423 0.29808 0.00010061 -0.040363 -1.3624E-05 337.5258655492327 27.433 0.54984 27.433 27.15 27.7 0 39 15 3 0 0 0 0.91149 1 4807 4807 3.5871 0.85186 1 6340000 8625 12523 5450 5454 8822 8822 0.05124858817509903 EAGKGYSH 8 Unmodified _EAGKGYSH_ 0 0 0 ENSG00000261649|ENST00000567390|GOLGA6L7 ENSG00000261649|ENST00000567390|GOLGA6L7 ENSG00000261649|ENST00000567390|GOLGA6L7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.253173828125 2 424.698492 847.382431 0.28241 0.00011994 -0.46079 -0.0001957 -0.17838 -7.5756E-05 424.6982595456293 30.833 0.46153 28.807 28.527 28.989 -2.0264 19 12 2 0 0 0 0.95515 1 5286 5286 21.747 21.747 1 809690 8626 7962 5451 5455 8823 8823 -0.047365072388970475 EAGKHYVA 8 Unmodified _EAGKHYVA_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2297058105469 2 437.72451 873.434466 0.18471 8.0852E-05 -0.2566 -0.00011232 -0.071893 -3.1469E-05 437.7243921599417 52.983 1.4926 52.983 52.644 54.137 0 69 41 2 0 0 0 0.30817 1 10196 10196 60.39 60.39 1 4603000 8627 7597 5452 5456 8824 8824 -0.0073134382514581375 EAGKHYVA 8 Unmodified _EAGKHYVA_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22906494140625 2 437.72451 873.434466 -0.2994 -0.00013105 0.42538 0.0001862 0.12598 5.5146E-05 437.724658304667 56.028 1.3057 53.134 52.651 53.957 -2.8944 60 37 2 0 0 0 0.41341 1 10645 10645 50.855 2.5092 1 5040800 8628 7597 5452 5456 8825 8825 -0.0073134382514581375 EAGKHYVA 8 Unmodified _EAGKHYVA_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2350158691406 2 437.72451 873.434466 0.029225 1.2793E-05 0.025385 1.1111E-05 0.05461 2.3904E-05 437.724481815134 56.325 1.3973 53.136 52.637 54.034 -3.1895 70 39 2 0 0 0 0.11385 1 10402 10402 60.39 12.044 1 3958400 8629 7597 5452 5456 8826 8826 -0.0073134382514581375 EAGKHYVA 8 Unmodified _EAGKHYVA_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21588134765625 2 437.72451 873.434466 -0.15216 -6.6605E-05 0.20287 8.8802E-05 0.05071 2.2197E-05 437.72457770949023 56.205 1.448 53.029 52.657 54.105 -3.1761 67 40 2 0 0 0 0.41341 1 10406 10406 50.855 2.5092 1 3365100 8630 7597 5452 5456 8827 8827 -0.0073134382514581375 EAGKHYVAS 9 Unmodified _EAGKHYVAS_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7827453613281 2 481.240524 960.466495 0.10467 5.0371E-05 -0.07043 -3.3894E-05 0.03424 1.6478E-05 481.2404417129428 37.761 0.66107 35.413 35.063 35.724 -2.3479 29 18 2 0 0 0 0.39168 1 6734 6734 0.40827 0.2854 1 1202000 8631 7597 5453 5457 8828 8828 -0.015319761420073519 EAGKRREEI 9 Unmodified _EAGKRREEI_ 0 0 0 REV__nc|ENSG00000110025|Q9NRS6-2|SNX15 REV__nc|ENSG00000110025|Q9NRS6-2|SNX15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7718505859375 2 544.296362 1086.57817 0.44103 0.00024005 -0.41276 -0.00022466 0.028267 1.5385E-05 544.2960950501 34.548 0.4593 32.332 32.122 32.581 -2.2158 20 12 2 0 0 0 0.87258 1 6092 6092 7.9102 0 1 1357000 + 8632 15186 5454 5458 8829 8829 0.038344582151466966 EAGKRYAEY 9 Unmodified _EAGKRYAEY_ 0 0 0 tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1 tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1 tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7949829101562 2 543.764363 1085.51417 0.49719 0.00027036 -0.30557 -0.00016616 0.19163 0.0001042 543.7641476890013 75.415 0.61649 75.415 75.029 75.645 0 36 17 3 0 0 0 0.58804 1 14625 14625 13.906 1.6654 1 5552100 8633 26318 5455 5459 8830 8830 -0.025163219418118388 EAGKSRDPP 9 Unmodified _EAGKSRDPP_ 0 0 0 REV__nc|ENSG00000079841|Q86UR5-4|RIMS1 REV__nc|ENSG00000079841|Q86UR5-4|RIMS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7442932128906 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 17.409 1 16.098 15.598 16.598 -1.3109 0 0 0 0.23508 1 2785 2785 4.756 0 1 + 8634 14403 5456 5460 8831 8831 -0.007208776303286868 EAGKSRDPP 9 Unmodified _EAGKSRDPP_ 0 0 0 REV__nc|ENSG00000079841|Q86UR5-4|RIMS1 REV__nc|ENSG00000079841|Q86UR5-4|RIMS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7437744140625 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 34.035 1 31.82 31.32 32.32 -2.2158 0 0 0 0.22962 1 5950 5950 14.838 3.198 1 + 8635 14403 5456 5460 8832 8832 -0.007208776303286868 EAGKWKSI 8 Unmodified _EAGKWKSI_ 0 0 0 nc|ENSG00000173077|Q9P2X7|DELEC1 nc|ENSG00000173077|Q9P2X7|DELEC1 nc|ENSG00000173077|Q9P2X7|DELEC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.239501953125 2 459.75581 917.497067 -0.075344 -3.464E-05 -0.97802 -0.00044965 -1.0534 -0.00048429 459.75582240733894 81.319 0.69028 77.762 77.374 78.064 -3.557 27 19 2 0 0 0 0.97966 1 15930 15930 7.2892 0 1 1032500 8636 12467 5457 5461 8833 8833 0.03501802243044949 EAGLAERLC 9 Unmodified _EAGLAERLC_ 0 0 0 ENSG00000175264|ENST00000308064|CHST1 ENSG00000175264|ENST00000308064|CHST1 ENSG00000175264|ENST00000308064|CHST1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24267578125 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 53.204 1 53.204 52.704 53.704 0 0 0 0 0.23508 1 10127 10127 12.532 0 1 8637 6396 5458 5462 8834 8834 -0.011950493596486922 EAGLCFINL 9 Unmodified _EAGLCFINL_ 0 0 0 REV__ENST00000447413.1_1_2:178188087-178196943:-|nuORF REV__ENST00000447413.1_1_2:178188087-178196943:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.259033203125 2 490.249503 978.484453 NaN NaN NaN NaN NaN NaN NaN 40.827 1 38.287 37.787 38.787 -2.5398 0 0 0 0.22621 1 7322 7322 15.847 1.2655 1 + 8638 21769 5459 5463 8835 8835 -0.005649772115248197 EAGLETLP 8 Unmodified _EAGLETLP_ 0 0 0 ENST00000380250.7_2_13:32605479-32605650:+|nuORF ENST00000380250.7_2_13:32605479-32605650:+|nuORF ENST00000380250.7_2_13:32605479-32605650:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.208984375 2 415.218726 828.422899 0.27666 0.00011487 -0.45966 -0.00019086 -0.18301 -7.5988E-05 415.2184723319355 76.208 0.77011 76.208 75.961 76.731 0 32 21 2 0 0 0 0.64227 1 14770 14770 19.439 0 1 2725500 8639 9314 5460 5464 8836 8836 0.0018241436084736051 EAGLETLP 8 Unmodified _EAGLETLP_ 0 0 0 ENST00000380250.7_2_13:32605479-32605650:+|nuORF ENST00000380250.7_2_13:32605479-32605650:+|nuORF ENST00000380250.7_2_13:32605479-32605650:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 415.218726 828.422899 -0.13226 -5.4915E-05 -0.097562 -4.0509E-05 -0.22982 -9.5425E-05 415.2186794826164 79.603 0.5667 76.093 75.763 76.33 -3.5102 -0.057764 0.00014262 NaN 19.439 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1624800 8640 9314 5460 5464 0.0018241436084736051 EAGLKLNE 8 Unmodified _EAGLKLNE_ 0 0 0 REV__ENST00000473150.1_1_3:87372750-87373125:+|nuORF REV__ENST00000473150.1_1_3:87372750-87373125:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2361145019531 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 29.621 1 29.621 29.121 30.121 0 0 0 0 0.21486 1 5299 5299 7.9102 0 1 + 8641 22069 5461 5465 8837 8837 0.019015056264720442 EAGLREKDY 9 Unmodified _EAGLREKDY_ 0 0 0 ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-3|NEDD9;NEDD9|p.P245Lfs*3|2|0.37|ENSG00000111859|chr6:11191135-11191135|G/-|frameshift_variant ENSG00000111859|ENST00000379446|NEDD9 ENSG00000111859|ENST00000379446|NEDD9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2706909179688 2 540.769645 1079.52474 0.47607 0.00025744 -0.4931 -0.00026665 -0.017036 -9.2125E-06 540.7694225873418 41.17 0.35088 41.17 40.989 41.34 0 16 9 2 0 0 0 0.55979 1 7703 7703 15.847 1.4418 1 628750 8642 2654 5462 5466 8838 8838 -0.011843392873743142 EAGLSNDLTY 10 Unmodified _EAGLSNDLTY_ 0 0 0 REV__ENSG00000147234|ENST00000683843|FRMPD3 REV__ENSG00000147234|ENST00000683843|FRMPD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7697143554688 2 541.753661 1081.49277 -0.0071135 -3.8537E-06 0.12259 6.6414E-05 0.11548 6.256E-05 541.7544902333074 47.156 1.8018 44.206 43.563 45.365 -2.9499 211 51 6 0 0 0 0.57735 1 8711 8711 20.454 1.1966 1 1168900000 + 8643 16928 5463 5467 8839 8839 -0.044717517611843505 EAGLSWPVG 9 Unmodified _EAGLSWPVG_ 0 0 0 CHPF2|p.N513Kfs*133|1|0.29|ENSG00000033100|chr7:151237898-151237899|-/A|frameshift_variant;nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2 CHPF2|p.N513Kfs*133|1|0.29|ENSG00000033100|chr7:151237898-151237899|-/A|frameshift_variant CHPF2|p.N513Kfs*133|1|0.29|ENSG00000033100|chr7:151237898-151237899|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2306213378906 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 45.472 1 42.606 42.106 43.106 -2.8666 0 0 0 0.19684 1 8253 8253 0.12781 0 1 8644 526 5464 5468 8840 8840 -0.010864770279567892 EAGMDTLIM 9 Unmodified _EAGMDTLIM_ 0 0 0 nc|ENSG00000119514|Q8IXK2-2|GALNT12;ENSG00000119514|ENST00000375011|GALNT12 nc|ENSG00000119514|Q8IXK2-2|GALNT12 nc|ENSG00000119514|Q8IXK2-2|GALNT12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25750732421875 2 490.725003 979.435454 -0.66958 -0.00032858 1.3036 0.00063969 0.63397 0.00031111 490.725715513648 23.353 0.34443 21.565 21.392 21.736 -1.7886 17 9 2 0 0 0 0.87258 1 3718 3718 7.9102 0 1 612360 8645 3080 5465 5469 8841 8841 -0.0550863356274931 EAGMDTLIM 9 Unmodified _EAGMDTLIM_ 0 0 0 nc|ENSG00000119514|Q8IXK2-2|GALNT12;ENSG00000119514|ENST00000375011|GALNT12 nc|ENSG00000119514|Q8IXK2-2|GALNT12 nc|ENSG00000119514|Q8IXK2-2|GALNT12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 490.725003 979.435454 0.18757 9.2044E-05 0.73237 0.00035939 0.91994 0.00045144 490.7252770714882 21.709 0.34318 21.709 21.566 21.909 0 0.062824 -0.00016958 NaN 7.9102 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1056800 8646 3080 5465 5469 -0.0550863356274931 EAGMDTLIM 9 Unmodified _EAGMDTLIM_ 0 0 0 nc|ENSG00000119514|Q8IXK2-2|GALNT12;ENSG00000119514|ENST00000375011|GALNT12 nc|ENSG00000119514|Q8IXK2-2|GALNT12 nc|ENSG00000119514|Q8IXK2-2|GALNT12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.725003 979.435454 0.0091765 4.5031E-06 0.84739 0.00041584 0.85657 0.00042034 490.725424379899 23.118 0.27529 21.665 21.543 21.818 -1.4535 0.018656 -5.6693E-05 NaN 7.9102 12 7 3 NaN NaN NaN NaN 0 NaN NaN 0 900730 8647 3080 5465 5469 -0.0550863356274931 EAGNRSFIFY 10 Unmodified _EAGNRSFIFY_ 0 0 0 PKD2|p.D304G|1|0.12|ENSG00000118762|chr4:88038318-88038318|A/G|missense_variant PKD2|p.D304G|1|0.12|ENSG00000118762|chr4:88038318-88038318|A/G|missense_variant PKD2|p.D304G|1|0.12|ENSG00000118762|chr4:88038318-88038318|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2918090820312 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 51.611 1 48.559 48.059 49.059 -3.0517 0 0 0 0.22588 1 9513 9513 9.3831 1.473 1 8648 12797 5466 5470 8842 8842 -0.021160600163966592 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.239013671875 2 465.239993 928.465432 0.20162 9.3804E-05 -1.3933 -0.00064823 -1.1917 -0.00055443 465.239340088142 37.4 0.93559 37.4 36.887 37.823 0 41 26 2 0 0 0 0.29353 3 6834 6834;6886;6987 37.974 8.8924 1 873820 + 8649 22882 5467 5471 8843;8844;8845 8843 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2389221191406 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 36.058 1 36.058 35.558 36.558 0 0 0 0 0.18733 1 6638 6638 30.637 1.555 1 + 8650 22882 5467 5471 8846 8846 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25311279296875 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 36.489 1 36.489 35.989 36.989 0 0 0 0 0.10244 1 6726 6726 46.021 4.1813 1 + 8651 22882 5467 5471 8847 8847 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.23980712890625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 36.587 1 36.587 36.087 37.087 0 0 0 0 0.10244 1 6748 6748 46.021 4.1813 1 + 8652 22882 5467 5471 8848 8848 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2398986816406 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 36.81 1 36.81 36.31 37.31 0 0 0 0 0.14213 1 6793 6793 37.974 5.6685 1 + 8653 22882 5467 5471 8849 8849 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2392883300781 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 38.007 1 38.007 37.507 38.507 0 0 0 0 0.21574 1 7039 7039 25.399 7.253 1 + 8654 22882 5467 5471 8850 8850 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2395935058594 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 38.418 1 38.418 37.918 38.918 0 0 0 0 0.21574 1 7123 7123 25.399 4.9457 1 + 8655 22882 5467 5471 8851 8851 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24041748046875 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 38.669 1 38.669 38.169 39.169 0 0 0 0 0.22576 1 7173 7173 14.838 4.0143 1 + 8656 22882 5467 5471 8852 8852 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2400817871094 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 39.002 1 39.002 38.502 39.502 0 0 0 0 0.22576 1 7237 7237 14.838 4.0143 1 + 8657 22882 5467 5471 8853 8853 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.239501953125 2 465.239993 928.465432 -0.45654 -0.0002124 0.50346 0.00023423 0.04692 2.1829E-05 465.24017317738793 36.284 3.3587 33.89 32.599 35.957 -2.3938 214 95 3 0 0 0 0.29353 1 6445 6445 37.974 5.6685 1 8545700 + 8658 22882 5467 5471 8854 8854 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2388916015625 2 465.239993 928.465432 -0.31821 -0.00014804 -1.469 -0.00068345 -1.7872 -0.00083149 465.2392198501525 39.962 0.7441 37.413 37.071 37.815 -2.5491 40 20 3 0 0 0 0.10354 3 7435 7386;7435;7488 58.679 16.839 1 1547400 + 8659 22882 5467 5471 8855;8856;8857 8856 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2403259277344 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 33.716 1 31.398 30.898 31.898 -2.3175 0 0 0 0.22535 1 6172 6172 20.454 3.5113 1 + 8660 22882 5467 5471 8858 8858 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23846435546875 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 33.959 1 31.642 31.142 32.142 -2.3175 0 0 0 0.20769 1 6224 6224 26.884 2.2098 1 + 8661 22882 5467 5471 8859 8859 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25079345703125 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 37.337 1 34.869 34.369 35.369 -2.4688 0 0 0 2.8426 1 6895 6895 8.893 0 1 + 8662 22882 5467 5471 8860 8860 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2395935058594 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 38.346 1 35.848 35.348 36.348 -2.4978 0 0 0 0.13485 1 7104 7104 54.774 0.94076 1 + 8663 22882 5467 5471 8861 8861 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2398376464844 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 39.483 1 36.934 36.434 37.434 -2.5491 0 0 0 0.14213 1 7338 7338 37.974 1.847 1 + 8664 22882 5467 5471 8862 8862 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.239501953125 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 40.475 1 37.841 37.341 38.341 -2.6348 0 0 0 0.18733 1 7543 7543 30.637 10.183 1 + 8665 22882 5467 5471 8863 8863 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2489929199219 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 40.654 1 38.019 37.519 38.519 -2.6348 0 0 0 0.21574 1 7579 7579 25.399 2.663 1 + 8666 22882 5467 5471 8864 8864 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23980712890625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 41.219 1 38.584 38.084 39.084 -2.6348 0 0 0 0.21574 1 7693 7693 25.399 6.1423 1 + 8667 22882 5467 5471 8865 8865 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2397766113281 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 41.516 1 38.881 38.381 39.381 -2.6348 0 0 0 0.22544 1 7753 7753 19.257 4.4187 1 + 8668 22882 5467 5471 8866 8866 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2486267089844 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 44.507 1 41.717 41.217 42.217 -2.79 0 0 0 0.22588 1 8364 8364 10.074 1.4806 1 + 8669 22882 5467 5471 8867 8867 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2397766113281 2 465.239993 928.465432 0.092265 4.2925E-05 0.12256 5.7019E-05 0.21482 9.9944E-05 465.23992737871123 36.223 2.1405 33.875 32.613 34.754 -2.3479 166 61 3 0 0 0 0.48672 1 6150 6150 25.399 4.9457 1 6895100 + 8670 22882 5467 5471 8868 8868 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2384948730469 2 465.239993 928.465432 0.039287 1.8278E-05 -0.50646 -0.00023562 -0.46717 -0.00021735 465.2391344084747 37.615 2.581 35.267 34.72 37.301 -2.3479 123 73 3 0 0 0 0.016058 5 6681 6681;6785;6830;6980;7084 100.37 8.3947 1 3900200 + 8671 22882 5467 5471 8869;8870;8871;8872;8873 8869 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23876953125 2 465.239993 928.465432 -0.034063 -1.5847E-05 -1.9967 -0.00092893 -2.0307 -0.00094478 465.23890366128404 39.947 0.81253 37.407 36.897 37.71 -2.5398 36 22 2 0 0 0 0.13946 2 7129 7129;7175 49.933 13.427 1 1437100 + 8672 22882 5467 5471 8874;8875 8874 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2540283203125 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 32.456 1 30.43 29.93 30.93 -2.0264 0 0 0 0.22535 1 5632 5632 20.454 4.6064 1 + 8673 22882 5467 5471 8876 8876 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2395935058594 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 33.585 1 31.438 30.938 31.938 -2.1468 0 0 0 0.22535 1 5862 5862 20.454 7.9221 1 + 8674 22882 5467 5471 8877 8877 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2586669921875 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 40.224 1 37.684 37.184 38.184 -2.5398 0 0 0 0.18733 1 7201 7201 30.637 10.183 1 + 8675 22882 5467 5471 8878 8878 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2392883300781 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 40.325 1 37.786 37.286 38.286 -2.5398 0 0 0 0.22544 1 7222 7222 19.257 7.6167 1 + 8676 22882 5467 5471 8879 8879 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23944091796875 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 40.672 1 38.132 37.632 38.632 -2.5398 0 0 0 0.21574 1 7293 7293 25.399 2.2509 1 + 8677 22882 5467 5471 8880 8880 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.240478515625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 40.901 1 38.361 37.861 38.861 -2.5398 0 0 0 0.22544 1 7336 7336 19.257 2.1441 1 + 8678 22882 5467 5471 8881 8881 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2402648925781 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 41.174 1 38.634 38.134 39.134 -2.5398 0 0 0 0.22544 1 7390 7390 19.257 6.2145 1 + 8679 22882 5467 5471 8882 8882 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24053955078125 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 41.669 1 39.018 38.518 39.518 -2.651 0 0 0 0.22544 1 7490 7490 19.257 4.4187 1 + 8680 22882 5467 5471 8883 8883 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2392883300781 2 465.239993 928.465432 0.26968 0.00012546 -0.38044 -0.000177 -0.11077 -5.1533E-05 465.2395926826212 36.067 5.1361 33.79 32.726 37.862 -2.2766 248 146 3 0 0 0 0.089578 4 7078 6774;6870;7021;7078 64.236 15.89 1 7106700 + 8681 22882 5467 5471 8884;8885;8886;8887 8887 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2396240234375 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 33.582 1 31.366 30.866 31.866 -2.2158 0 0 0 0.22544 1 5855 5855 19.257 0 1 + 8682 22882 5467 5471 8888 8888 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2400817871094 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 33.821 1 31.605 31.105 32.105 -2.2158 0 0 0 0.20769 1 5908 5908 26.884 6.43 1 + 8683 22882 5467 5471 8889 8889 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24163818359375 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 34.935 1 32.658 32.158 33.158 -2.2766 0 0 0 0.22535 1 6134 6134 20.454 4.6064 1 + 8684 22882 5467 5471 8890 8890 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2409973144531 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 41.561 1 39.071 38.571 39.571 -2.4896 0 0 0 0.22323 1 7460 7460 24.021 9.1823 1 + 8685 22882 5467 5471 8891 8891 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2376403808594 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 45.151 1 42.366 41.866 42.866 -2.7849 0 0 0 0.22576 1 8189 8189 14.838 4.0143 1 + 8686 22882 5467 5471 8892 8892 -0.0016619051091311121 EAGPAPPPPP 10 Unmodified _EAGPAPPPPP_ 0 0 0 REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 465.239993 928.465432 -0.31821 -0.00014804 -1.469 -0.00068345 -1.7872 -0.00083149 465.2392198501525 39.962 0.7441 37.413 37.071 37.815 -2.5491 0.0065597 0.00013999 NaN 58.679 40 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1547400 + 8687 22882 5467 5471 -0.0016619051091311121 EAGPEDME 8 Unmodified _EAGPEDME_ 0 0 0 nc|ENSG00000175137|Q7L8J4-2|SH3BP5L;ENSG00000175137|ENST00000366472|SH3BP5L;ENST00000484202.2_1_1:249106101-249107397:-|nuORF;ENST00000475978.1_1_1:249106101-249108957:-|nuORF nc|ENSG00000175137|Q7L8J4-2|SH3BP5L nc|ENSG00000175137|Q7L8J4-2|SH3BP5L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 439.0569763183594 2 439.165833 876.317113 NaN NaN NaN NaN NaN NaN NaN 20.984 1 19.51 19.01 20.01 -1.4742 0 0 0 0.21486 1 3530 3530 9.3474 6.77 1 8688 6387 5468 5472 8893 8893 -0.12599289546915315 EAGPPGKAC 9 Unmodified _EAGPPGKAC_ 0 0 0 COL19A1|p.S585Afs*8|1|0.2|ENSG00000082293|chr6:70144987-70144987|A/-|frameshift_variant COL19A1|p.S585Afs*8|1|0.2|ENSG00000082293|chr6:70144987-70144987|A/-|frameshift_variant COL19A1|p.S585Afs*8|1|0.2|ENSG00000082293|chr6:70144987-70144987|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.1868591308594 2 415.19727 828.379988 NaN NaN NaN NaN NaN NaN NaN 29.4 1 29.4 28.9 29.9 0 0 0 0 0.19656 1 5253 5253 0.40827 0.335 1 8689 618 5469 5473 8894 8894 -0.041066789682190574 EAGPPHPPD 9 Unmodified _EAGPPHPPD_ 0 0 0 REV__ENST00000359878.7_1_2:201374639-201374747:-|nuORF REV__ENST00000359878.7_1_2:201374639-201374747:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.220703125 2 458.711599 915.408646 0.17138 7.8615E-05 -0.094135 -4.3181E-05 0.077247 3.5434E-05 458.71144581934243 33.522 0.38272 31.375 31.149 31.532 -2.1468 16 10 2 0 0 0 0.65155 1 5874 5874 28.487 8.0332 1 572030 + 8690 20857 5470 5474 8895 8895 -0.052442380674278866 EAGPRHAPS 9 Unmodified _EAGPRHAPS_ 0 0 0 REV__ZFYVE28|p.C366R|1|0.42|ENSG00000159733|chr4:2305244-2305244|A/G|missense_variant REV__ZFYVE28|p.C366R|1|0.42|ENSG00000159733|chr4:2305244-2305244|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5322265625 2 461.230491 920.446428 0.063099 2.9103E-05 -0.53354 -0.00024608 -0.47044 -0.00021698 461.2296909087931 36.867 0.20431 34.519 34.346 34.55 -2.3479 7 5 2 0 0 0 0.84208 1 6498 6498 7.2892 3.3448 1 325010 + 8691 17380 5471 5475 8896 8896 -0.01697727081955236 EAGPRHAPS 9 Unmodified _EAGPRHAPS_ 0 0 0 REV__ZFYVE28|p.C366R|1|0.42|ENSG00000159733|chr4:2305244-2305244|A/G|missense_variant REV__ZFYVE28|p.C366R|1|0.42|ENSG00000159733|chr4:2305244-2305244|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.230491 920.446428 0.24559 0.00011327 -2.6341 -0.0012149 -2.3885 -0.0011016 461.22900989014323 36.96 0.1808 34.622 34.557 34.738 -2.3375 0.051662 -0.0013803 NaN 7.2892 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 119730 + 8692 17380 5471 5475 -0.01697727081955236 EAGPTCFGRDA 11 Carbamidomethyl (C) _EAGPTC(Carbamidomethyl (C))FGRDA_ EAGPTC(1)FGRDA EAGPTC(42)FGRDA 0 1 0 ENST00000251691.4_1_6:138483291-138531090:+|nuORF ENST00000251691.4_1_6:138483291-138531090:+|nuORF ENST00000251691.4_1_6:138483291-138531090:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2696533203125 2 590.756212 1179.49787 0.19942 0.00011781 0.0037809 2.2336E-06 0.2032 0.00012004 590.7562838889246 55.978 0.56537 55.978 55.656 56.221 0 39 15 3 0 0 0 0.43589 1 10685 10685 41.956 9.1699 1 5798100 8693 8223 5472 5476 8897 8897 10 -0.08469771170189233 EAGPTCFGRDA 11 Carbamidomethyl (C) _EAGPTC(Carbamidomethyl (C))FGRDA_ 0 1 0 ENST00000251691.4_1_6:138483291-138531090:+|nuORF ENST00000251691.4_1_6:138483291-138531090:+|nuORF ENST00000251691.4_1_6:138483291-138531090:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 590.756212 1179.49787 0.43612 0.00025764 -0.35706 -0.00021094 0.079057 4.6703E-05 590.7560327209103 59.127 0.70352 56.216 55.857 56.56 -2.9105 0.11536 -0.00017064 NaN 41.956 59 19 4 NaN NaN NaN NaN 0 NaN NaN 0 11825000 8694 8223 5472 5476 10 -0.08469771170189233 EAGPTCFGRDA 11 Carbamidomethyl (C) _EAGPTC(Carbamidomethyl (C))FGRDA_ 0 1 0 ENST00000251691.4_1_6:138483291-138531090:+|nuORF ENST00000251691.4_1_6:138483291-138531090:+|nuORF ENST00000251691.4_1_6:138483291-138531090:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 590.756212 1179.49787 0.49514 0.00029251 -0.38664 -0.00022841 0.10851 6.4101E-05 590.7560344829708 59.387 0.73965 56.074 55.707 56.447 -3.3139 -0.027565 -0.00020558 NaN 41.956 57 20 4 NaN NaN NaN NaN 0 NaN NaN 0 10377000 8695 8223 5472 5476 10 -0.08469771170189233 EAGQDQAN 8 Unmodified _EAGQDQAN_ 0 0 0 REV__ENSG00000147872|ENST00000276914|PLIN2 REV__ENSG00000147872|ENST00000276914|PLIN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 416.4834289550781 2 416.675214 831.335875 NaN NaN NaN NaN NaN NaN NaN 56.545 1 53.651 53.151 54.151 -2.8944 0 0 0 0.22647 1 10837 10837 0.25148 0 1 + 8696 16955 5473 5477 8898 8898 -0.08653991860853694 EAGQIHQEPS 10 Unmodified _EAGQIHQEPS_ 0 0 0 ENST00000452148.2_1_9:97321391-97329922:+|nuORF ENST00000452148.2_1_9:97321391-97329922:+|nuORF ENST00000452148.2_1_9:97321391-97329922:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7825317382812 2 548.256902 1094.49925 0.85998 0.00047149 -0.36542 -0.00020034 0.49456 0.00027115 548.2567853847478 29.115 0.45982 27.159 26.878 27.338 -1.9561 27 12 3 0 0 0 0.88533 1 5198 5198 8.7454 2.0222 1 1228800 8697 9989 5474 5478 8899 8899 -0.04421813809813102 EAGQLSVIAA 10 Unmodified _EAGQLSVIAA_ 0 0 0 ENST00000367662.4_1_1:176734816-176734852:+|nuORF ENST00000367662.4_1_1:176734816-176734852:+|nuORF ENST00000367662.4_1_1:176734816-176734852:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.237548828125 2 479.763832 957.513111 -0.021924 -1.0518E-05 -0.24655 -0.00011828 -0.26847 -0.0001288 479.7636304773307 31.66 0.62858 31.66 31.284 31.913 0 56 17 4 0 0 0 0.57807 2 5716 5690;5716 20.415 5.1606 1 17974000 8698 9080 5475 5479 8900;8901 8901 0.032654636892857525 EAGQLSVIAA 10 Unmodified _EAGQLSVIAA_ 0 0 0 ENST00000367662.4_1_1:176734816-176734852:+|nuORF ENST00000367662.4_1_1:176734816-176734852:+|nuORF ENST00000367662.4_1_1:176734816-176734852:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2537536621094 2 479.763832 957.513111 0.22433 0.00010763 -0.46048 -0.00022092 -0.23615 -0.0001133 479.7635308414876 33.771 0.9398 31.624 30.902 31.841 -2.1468 61 26 4 0 0 0 0.67319 1 5925 5925 13.906 0.86358 1 18764000 8699 9080 5475 5479 8902 8902 0.032654636892857525 EAGQLSVIAA 10 Unmodified _EAGQLSVIAA_ 0 0 0 ENST00000367662.4_1_1:176734816-176734852:+|nuORF ENST00000367662.4_1_1:176734816-176734852:+|nuORF ENST00000367662.4_1_1:176734816-176734852:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2530212402344 2 479.763832 957.513111 0.36073 0.00017307 -0.55979 -0.00026857 -0.19906 -9.5504E-05 479.7634673888791 33.804 0.97134 31.588 30.874 31.846 -2.2158 61 27 4 0 0 0 0.67319 1 5931 5931 13.906 3.0821 1 14504000 8700 9080 5475 5479 8903 8903 0.032654636892857525 EAGQRLGYSV 10 Unmodified _EAGQRLGYSV_ 0 0 0 ENST00000487721.1_1_10:102796491-102797279:+|nuORF;ENSG00000107819|ENST00000393459|SFXN3 ENST00000487721.1_1_10:102796491-102797279:+|nuORF ENST00000487721.1_1_10:102796491-102797279:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.281005859375 2 540.277638 1078.54072 0.19208 0.00010378 -0.012482 -6.7437E-06 0.1796 9.7035E-05 540.2776025743376 37.395 0.71731 35.047 34.789 35.506 -2.3479 52 20 4 0 0 0 0.65108 1 6665 6665 16.149 2.5342 1 12941000 8701 2441 5476 5480 8904 8904 0.004593669495079666 EAGQVGPPFIY 11 Unmodified _EAGQVGPPFIY_ 0 0 0 REV__DTX3|p.V243I|2|0.38|ENSG00000178498|chr12:57607590-57607590|G/A|missense_variant REV__DTX3|p.V243I|2|0.38|ENSG00000178498|chr12:57607590-57607590|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2562866210938 2 589.298039 1176.58152 0.37334 0.00022001 1.6571 0.00097652 2.0304 0.0011965 589.2988043632379 102.66 1.0848 98.471 97.992 99.077 -4.1861 56 30 3 0 0 0 0.74417 1 20102 20102 8.7454 0.58988 1 5716400 + 8702 13758 5477 5481 8905 8905 0.0002970826915316138 EAGRERRALSV 11 Unmodified _EAGRERRALSV_ 0 0 0 nc|ENSG00000056291|Q9Y5X5|NPFFR2;nc|ENSG00000056291|Q9Y5X5-4|NPFFR2 nc|ENSG00000056291|Q9Y5X5|NPFFR2 nc|ENSG00000056291|Q9Y5X5|NPFFR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.1697082519531 3 415.233704 1242.67928 NaN NaN NaN NaN NaN NaN NaN 53.042 1 49.946 49.446 50.446 -3.0954 0 0 0 0.23379 1 9801 9801 2.4348 0 1 8703 12219 5478 5482 8906 8906 0.06764909917842488 EAGRFLNL 8 Unmodified _EAGRFLNL_ 0 0 0 REV__ENSG00000007341|ENST00000358039|ST7L;REV__nc|ENSG00000004866|Q9NRC1-6|ST7;REV__ENST00000497457.5_1_1:113121036-113161548:-|nuORF REV__ENSG00000007341|ENST00000358039|ST7L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24761962890625 2 460.253434 918.492316 NaN NaN NaN NaN NaN NaN NaN 54.141 1 54.141 53.641 54.641 0 0 0 0 0.21323 1 10322 10322 14.582 0 1 + 8704 13887;22403;13844 5479 5483 8907 8907 0.029809181002860896 EAGRIAASQY 10 Unmodified _EAGRIAASQY_ 0 0 0 REV__ENST00000394665.5_1_4:109541746-109541830:+|nuORF REV__ENST00000394665.5_1_4:109541746-109541830:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2702026367188 2 533.269813 1064.52507 0.37186 0.0001983 -0.07034 -3.751E-05 0.30152 0.00016079 533.2696417282177 35.472 0.52522 33.195 32.895 33.42 -2.2766 28 14 3 0 0 0 0.51199 1 6250 6250 24.021 4.5816 1 1266500 + 8705 21248 5480 5484 8908 8908 -0.004609195675357114 EAGRPWSI 8 Unmodified _EAGRPWSI_ 0 0 0 REV__ENST00000374171.4_1_9:116172648-116172913:-|nuORF REV__ENST00000374171.4_1_9:116172648-116172913:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2384033203125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 62.043 1 59.082 58.582 59.582 -2.9614 0 0 0 0.21039 1 11966 11966 16.942 1.0951 1 + 8706 21051 5481 5485 8909 8909 0.00036345066178000707 EAGRPWSI 8 Unmodified _EAGRPWSI_ 0 0 0 REV__ENST00000374171.4_1_9:116172648-116172913:-|nuORF REV__ENST00000374171.4_1_9:116172648-116172913:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2388916015625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 86.993 1 83.266 82.766 83.766 -3.727 0 0 0 0.21486 1 17007 17007 11.64 0 1 + 8707 21051 5481 5485 8910 8910 0.00036345066178000707 EAGRPWSI 8 Unmodified _EAGRPWSI_ 0 0 0 REV__ENST00000374171.4_1_9:116172648-116172913:-|nuORF REV__ENST00000374171.4_1_9:116172648-116172913:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2288513183594 2 458.237784 914.461016 0.036249 1.6611E-05 0.68976 0.00031607 0.72601 0.00033268 458.2380597892279 60.244 0.67417 56.93 56.516 57.19 -3.3139 38 18 3 0 0 0 0.70613 1 11257 11257 13.508 1.8676 1 1394700 + 8708 21051 5481 5485 8911 8911 0.00036345066178000707 EAGRPWSI 8 Unmodified _EAGRPWSI_ 0 0 0 REV__ENST00000374171.4_1_9:116172648-116172913:-|nuORF REV__ENST00000374171.4_1_9:116172648-116172913:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23797607421875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 97.596 1 93.676 93.176 94.176 -3.9194 0 0 0 0.21323 1 18729 18729 14.582 0 1 + 8709 21051 5481 5485 8912 8912 0.00036345066178000707 EAGRPWSI 8 Unmodified _EAGRPWSI_ 0 0 0 REV__ENST00000374171.4_1_9:116172648-116172913:-|nuORF REV__ENST00000374171.4_1_9:116172648-116172913:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2401428222656 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 112.39 1 108.12 107.62 108.62 -4.2725 0 0 0 0.21039 1 21643 21643 16.942 3.4344 1 + 8710 21051 5481 5485 8913 8913 0.00036345066178000707 EAGRRCVS 8 Unmodified _EAGRRCVS_ 0 0 0 ENSG00000147443|ENST00000276420|DOK2 ENSG00000147443|ENST00000276420|DOK2 ENSG00000147443|ENST00000276420|DOK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 439.2194519042969 2 439.219069 876.423584 NaN NaN NaN NaN NaN NaN NaN 56.291 1 53.102 52.602 53.602 -3.1895 0 0 0 0.21486 1 10429 10429 9.3474 0 1 8711 4702 5482 5486 8914 8914 -0.019570694710751013 EAGRTAYF 8 Unmodified _EAGRTAYF_ 0 0 0 nc|ENSG00000101605|P52179-2|MYOM1;ENSG00000101605|ENST00000356443|MYOM1 nc|ENSG00000101605|P52179-2|MYOM1 nc|ENSG00000101605|P52179-2|MYOM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2384033203125 2 457.721967 913.429381 0.034066 1.5593E-05 0.39931 0.00018277 0.43338 0.00019837 457.72204454283565 57.359 0.37838 57.359 57.165 57.543 0 17 10 2 0 0 0 0.95284 1 10939 10939 20.871 7.3633 1 983020 8712 2077 5483 5487 8915 8915 -0.03079647687764009 EAGSGVPLSL 10 Unmodified _EAGSGVPLSL_ 0 0 0 ENST00000295488.7_1_4:84376870-84377002:-|nuORF ENST00000295488.7_1_4:84376870-84377002:-|nuORF ENST00000295488.7_1_4:84376870-84377002:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25091552734375 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 78.923 1 78.923 78.423 79.423 0 0 0 0 0.22552 1 15360 15360 18.146 1.0335 1 8713 8493 5484 5488 8916 8916 0.01945774797957256 EAGSKNPVD 9 Unmodified _EAGSKNPVD_ 0 0 0 REV__nc|ENSG00000152291|O43493-6|TGOLN2 REV__nc|ENSG00000152291|O43493-6|TGOLN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2354431152344 2 458.722164 915.429775 0.066201 3.0368E-05 -0.013435 -6.1629E-06 0.052766 2.4205E-05 458.7219920295952 124.43 0.80372 119.85 119.41 120.21 -4.5757 35 22 2 0 0 0 0.57447 1 24448 24448 14.838 0 1 1928800 + 8714 17106 5485 5489 8917 8917 -0.03132272758568888 EAGSPEPEPAP 11 Unmodified _EAGSPEPEPAP_ 0 0 0 ENSG00000213638|ENST00000329478|ADAT3;nc|ENSG00000213638|Q96EY9|ADAT3 ENSG00000213638|ENST00000329478|ADAT3 ENSG00000213638|ENST00000329478|ADAT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2849731445312 2 540.745836 1079.47712 0.063894 3.455E-05 -0.10309 -5.5746E-05 -0.039197 -2.1196E-05 540.7457124858219 26.133 0.89164 24.211 23.917 24.808 -1.9222 100 25 6 0 0 0 0.6353 1 4426 4426 16.149 0.30192 1 75034000 8715 7701 5486 5490 8918 8918 -0.05944038278221342 EAGSPKAGAQ 10 Unmodified _EAGSPKAGAQ_ 0 0 0 REV__ENSG00000242252|ENST00000368272|BGLAP REV__ENSG00000242252|ENST00000368272|BGLAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2252502441406 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 19.401 1 18.005 17.505 18.505 -1.3966 0 0 0 0.22588 1 3195 3195 9.3831 0.78985 1 + 8716 19792 5487 5491 8919 8919 -0.0148856652166387 EAGSVWLTG 9 Unmodified _EAGSVWLTG_ 0 0 0 REV__ENST00000487163.5_1_1:161131815-161133927:+|nuORF REV__ENST00000487163.5_1_1:161131815-161133927:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2284851074219 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 22.436 1 20.982 20.482 21.482 -1.4535 0 0 0 0.23508 1 3577 3577 10.824 0 1 + 8717 22252 5488 5492 8920 8920 -0.017787808905723068 EAGTVELLQ 9 Unmodified _EAGTVELLQ_ 0 0 0 ENST00000591629.1_1_18:37115485-37380062:-|nuORF ENST00000591629.1_1_18:37115485-37380062:-|nuORF ENST00000591629.1_1_18:37115485-37380062:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2447509765625 2 480.25584 958.497126 -0.029857 -1.4339E-05 -3.1673 -0.0015211 -3.1971 -0.0015354 480.25583672712906 34.581 0.61295 34.581 34.312 34.925 0 55 17 4 0 0 0 0.48644 1 6313 6313 20.454 1.0146 1 3935700 8718 11626 5489 5493 8921 8921 0.01621757452392103 EAGTWRSL 8 Unmodified _EAGTWRSL_ 0 0 0 ENSG00000204767|ENST00000377365|INSYN2B ENSG00000204767|ENST00000377365|INSYN2B ENSG00000204767|ENST00000377365|INSYN2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23919677734375 2 460.235242 918.45593 -0.05854 -2.6942E-05 0.36277 0.00016696 0.30423 0.00014002 460.2353307348203 46.31 0.48504 43.445 43.172 43.657 -2.8653 29 13 3 0 0 0 0.68128 1 8364 8364 16.942 0 1 1695800 8719 7610 5490 5494 8922 8922 -0.006559587964375169 EAGVAAESKKP 11 Unmodified _EAGVAAESKKP_ 0 0 0 REV__ENST00000544050.1_1_12:4721694-4722916:+|nuORF REV__ENST00000544050.1_1_12:4721694-4722916:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.792724609375 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 17.121 1 15.905 15.405 16.405 -1.2159 0 0 0 0.22595 1 2729 2729 11.495 0.67078 1 + 8720 13917 5491 5495 8923 8923 0.032325202637593975 EAGVCPVRDP 10 Unmodified _EAGVCPVRDP_ 0 0 0 ENST00000029410.9_1_5:177036708-177037125:+|nuORF ENST00000029410.9_1_5:177036708-177037125:+|nuORF ENST00000029410.9_1_5:177036708-177037125:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2730712890625 2 521.752941 1041.49133 0.25963 0.00013546 -0.42067 -0.00021948 -0.16104 -8.4021E-05 521.7528189919068 21.603 0.35478 20.129 19.912 20.266 -1.4742 23 9 3 0 0 0 0.68961 1 3677 3677 12.241 3.6474 1 1128100 8721 8067 5492 5496 8924 8924 -0.02775664330943073 EAGVEYMDSS 10 Unmodified _EAGVEYMDSS_ 0 0 0 REV__ENST00000467533.5_1_5:141005762-141009272:-|nuORF REV__ENST00000467533.5_1_5:141005762-141009272:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7950439453125 2 544.216054 1086.41756 0.26034 0.00014168 0.97041 0.00052811 1.2307 0.00066979 544.7200175535645 140.77 0.14072 136.12 136.02 136.16 -4.6493 5 3 2 0 0 0 0.84281 1 27790 27790 9.3831 0 1 1228500 + 8722 21981 5493 5497 8925 8925 -0.12219677283906094 EAGVGAIAAVG 11 Unmodified _EAGVGAIAAVG_ 0 0 0 REV__CON__P04258 REV__CON__P04258 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2339782714844 2 457.750724 913.486896 0.061808 2.8293E-05 0.55368 0.00025345 0.61549 0.00028174 457.7508850634773 26.007 0.82844 24.372 23.788 24.616 -1.6347 48 23 3 0 0 0 0.6353 1 4184 4184 16.149 4.5088 1 3130000 + + 8723 13521 5494 5498 8926 8926 0.026691945178072274 EAGVISGSTT 10 Unmodified _EAGVISGSTT_ 0 0 0 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5397033691406 2 461.229822 920.445091 0.26274 0.00012118 -0.02158 -9.9531E-06 0.24116 0.00011123 461.2297010218644 36.952 0.7323 36.952 36.561 37.293 0 36 20 2 0 0 0 0.51199 1 6858 6858 24.021 5.8856 1 1271700 8724 26079 5495 5499 8927 8927 -0.018314059613658173 EAGVISGSTT 10 Unmodified _EAGVISGSTT_ 0 0 0 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.54327392578125 2 461.229822 920.445091 -0.021455 -9.8959E-06 0.26973 0.00012441 0.24828 0.00011451 461.2298293521247 39.316 0.94268 36.874 36.444 37.386 -2.4419 46 26 2 0 0 0 0.40256 1 7010 7010 30.637 5.2372 1 1671800 8725 26079 5495 5499 8928 8928 -0.018314059613658173 EAGVISGSTT 10 Unmodified _EAGVISGSTT_ 0 0 0 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.229822 920.445091 -0.37305 -0.00017206 0.70329 0.00032438 0.33024 0.00015232 461.2301138929452 39.237 0.77603 36.688 36.396 37.172 -2.5491 -0.13049 0.000338 NaN 30.637 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2132000 8726 26079 5495 5499 -0.018314059613658173 EAGVISGSTT 10 Unmodified _EAGVISGSTT_ 0 0 0 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.229822 920.445091 0.14386 6.6353E-05 0.26548 0.00012245 0.40934 0.0001888 461.2298210838547 39.166 0.841 36.761 36.441 37.282 -2.4049 -0.057858 -6.5862E-05 NaN 30.637 39 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1206700 8727 26079 5495 5499 -0.018314059613658173 EAGVKEQEA 9 Unmodified _EAGVKEQEA_ 0 0 0 REV__nc|ENSG00000146054|Q9C029-3|TRIM7 REV__nc|ENSG00000146054|Q9C029-3|TRIM7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2373962402344 2 480.735271 959.45599 -0.30372 -0.00014601 0.58691 0.00028215 0.2832 0.00013614 480.7355404277563 35.577 0.63995 33.183 32.88 33.52 -2.3938 31 17 2 0 0 0 0.43219 1 6518 6518 32.305 6.9062 1 2150600 + 8728 16867 5496 5500 8929 8929 -0.02536003587090363 EAGVKEQEA 9 Unmodified _EAGVKEQEA_ 0 0 0 REV__nc|ENSG00000146054|Q9C029-3|TRIM7 REV__nc|ENSG00000146054|Q9C029-3|TRIM7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2364807128906 2 480.735271 959.45599 0.17141 8.2402E-05 0.35848 0.00017233 0.52988 0.00025473 480.7354197998158 35.603 0.62193 33.35 33.019 33.641 -2.2527 29 17 2 0 0 0 0.19983 3 6293 6225;6293;6295 39.957 10.876 1 1488200 + 8729 16867 5496 5500 8930;8931;8932 8931 -0.02536003587090363 EAGVKEQEA 9 Unmodified _EAGVKEQEA_ 0 0 0 REV__nc|ENSG00000146054|Q9C029-3|TRIM7 REV__nc|ENSG00000146054|Q9C029-3|TRIM7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.236328125 2 480.735271 959.45599 0.25695 0.00012353 -0.050449 -2.4253E-05 0.2065 9.9273E-05 480.73517177505136 35.616 0.55873 33.34 33.037 33.595 -2.2766 26 15 2 0 0 0 0.37634 2 6242 6242;6287 36.127 5.4905 1 906040 + 8730 16867 5496 5500 8933;8934 8933 -0.02536003587090363 EAGVTLDSQ 9 Unmodified _EAGVTLDSQ_ 0 0 0 tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1 tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1 tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24542236328125 2 460.221997 918.429441 NaN NaN NaN NaN NaN NaN NaN 32.961 1 30.73 30.23 31.23 -2.2305 0 0 0 0.23508 1 6018 6018 11.64 0 1 8731 25964 5497 5501 8935 8935 -0.03303692478425546 EAGVWERL 8 Unmodified _EAGVWERL_ 0 0 0 ENST00000406721.7_1_9:139635361-139636622:-|nuORF ENST00000406721.7_1_9:139635361-139636622:-|nuORF ENST00000406721.7_1_9:139635361-139636622:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25250244140625 2 480.250892 958.48723 0.066765 3.2064E-05 -0.6172 -0.00029641 -0.55043 -0.00026435 480.2508361327229 61.604 0.76929 58.643 58.205 58.974 -2.9614 50 21 3 0 0 0 0.70613 1 11819 11819 13.508 0.97634 1 4897300 8732 9545 5498 5502 8936 8936 0.006326142376565258 EAGWGHCR 8 Unmodified _EAGWGHCR_ 0 0 0 IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2244873046875 2 458.198136 914.381719 -0.57509 -0.0002635 0.088323 4.0469E-05 -0.48676 -0.00022303 458.1981472122927 108.84 0.73383 104.46 104.15 104.89 -4.3776 44 20 3 0 0 0 8448 1 21442 21442 6.1918 0 1 1573500 8733 11941 5499 5503 8937 8937 -0.07889625159600655 EAGWGHCR 8 Unmodified _EAGWGHCR_ 0 0 0 IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.198136 914.381719 -0.57509 -0.0002635 0.088323 4.0469E-05 -0.48676 -0.00022303 458.1981472122927 108.84 0.73383 104.46 104.15 104.89 -4.3776 -0.05013 -0.00010847 NaN 6.1918 44 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1573500 8734 11941 5499 5503 -0.07889625159600655 EAGWGHCR 8 Unmodified _EAGWGHCR_ 0 0 0 IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.198136 914.381719 -0.20401 -9.3476E-05 0.31477 0.00014423 0.11077 5.0753E-05 458.19831499700143 109.02 0.62252 104.56 104.26 104.88 -4.4518 0.05013 9.9053E-05 NaN 6.1918 46 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4490800 8735 11941 5499 5503 -0.07889625159600655 EAGWPQIQH 9 Unmodified _EAGWPQIQH_ 0 0 0 REV__ENST00000422732.2_10:47098053-47098326:-|nuORF REV__ENST00000422732.2_10:47098053-47098326:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2608032226562 2 533.259248 1064.50394 NaN NaN NaN NaN NaN NaN NaN 28.697 1 26.741 26.241 27.241 -1.9561 0 0 0 0.23508 1 5139 5139 11.64 0 1 + 8736 21523 5500 5504 8938 8938 -0.025728848763719725 EAGYHILQ 8 Unmodified _EAGYHILQ_ 0 0 0 ENST00000494367.1_1_6:29974674-29976922:+|nuORF ENST00000494367.1_1_6:29974674-29976922:+|nuORF ENST00000494367.1_1_6:29974674-29976922:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2416687011719 2 465.737617 929.460681 0.28129 0.00013101 -0.13287 -6.1885E-05 0.14841 6.9122E-05 465.7373138077609 64.146 0.49 60.889 60.711 61.201 -3.2567 20 13 2 0 0 0 0.8784 1 12064 12064 3.5871 3.5871 1 1325500 8737 10556 5501 5505 8939 8939 -0.006870746536719707 EAHALGTL 8 Unmodified _EAHALGTL_ 0 0 0 ENST00000560168.1_1_19:46268761-46269535:-|nuORF;SIX5|p.H691Tfs*4|1|0.42|ENSG00000177045|chr19:45765650-45765650|G/-|frameshift_variant;SIX5|p.G712Vfs*14|2|0.39|ENSG00000177045|chr19:45765586-45765586|C/-|frameshift_variant;ENSG00000177045|ENST00000317578|SIX5 ENST00000560168.1_1_19:46268761-46269535:-|nuORF ENST00000560168.1_1_19:46268761-46269535:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 406.2533264160156 2 406.21906 810.423567 NaN NaN NaN NaN NaN NaN NaN 42.753 1 40.147 39.647 40.647 -2.606 0 0 0 0.21486 1 7698 7698 8.5933 0 1 8738 6494 5502 5506 8940 8940 0.010772538005767274 EAHAQDRCY 9 Unmodified _EAHAQDRCY_ 0 0 0 REV__nc|ENSG00000146205|Q6IWH7-2|ANO7 REV__nc|ENSG00000146205|Q6IWH7-2|ANO7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.781982421875 2 546.729997 1091.44544 0.085322 4.6648E-05 -0.22778 -0.00012453 -0.14245 -7.7884E-05 546.7298497870484 93.792 1.0872 93.792 93.292 94.379 0 87 30 4 0 0 0 0.62102 1 18419 18419 11.64 3.047 1 21573000 + 8739 24087 5503 5507 8941 8941 -0.0966230951316902 EAHCSQMN 8 Unmodified _EAHCSQMN_ 0 0 0 REV__nc|ENSG00000113361|P55285-2|CDH6 REV__nc|ENSG00000113361|P55285-2|CDH6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2298889160156 2 460.173469 918.332386 NaN NaN NaN NaN NaN NaN NaN 17.938 1 16.423 15.923 16.923 -1.5148 0 0 0 0.21486 1 2633 2633 2.5775 0 1 + 8740 24003 5504 5508 8942 8942 -0.1300470123071591 EAHDSIIL 8 Unmodified _EAHDSIIL_ 0 0 0 ENST00000533077.5_1_11:67048080-67048167:+|nuORF ENST00000533077.5_1_11:67048080-67048167:+|nuORF ENST00000533077.5_1_11:67048080-67048167:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.1133117675781 2 449.23745 896.460347 -0.054049 -2.4281E-05 0.2218 9.9641E-05 0.16775 7.536E-05 449.23753391236244 78.359 0.34695 74.593 74.389 74.736 -3.7664 11 9 2 0 0 0 0.97994 1 14840 14840 2.5775 0 1 770930 8741 10988 5505 5509 8943 8943 0.007975056264967861 EAHEGVHAL 9 Unmodified _EAHEGVHAL_ 0 0 0 REV__tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1 REV__tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2376708984375 2 481.738148 961.461744 0.93343 0.00044967 1.8192 0.00087638 2.7526 0.0013261 481.7389321708759 27.743 0.30737 25.961 25.775 26.083 -1.7821 13 8 2 0 0 0 0.74655 1 4936 4936 21.747 2.3076 1 550940 + 8742 25291 5506 5510 8944 8944 -0.020528602847662114 EAHEPLALY 9 Unmodified _EAHEPLALY_ 0 0 0 REV__DLX5|p.R167H|1|0.21|ENSG00000105880|chr7:97022225-97022225|C/T|missense_variant REV__DLX5|p.R167H|1|0.21|ENSG00000105880|chr7:97022225-97022225|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 348.1783752441406 3 348.178313 1041.51311 -0.30604 -0.00010656 -0.0019774 -6.885E-07 -0.30802 -0.00010724 348.17826077597573 35.444 0.58885 35.444 35.168 35.757 0 22 16 2 0 0 0 0.37087 1 6546 6546 0.37959 0 1 890570 + 8743 13698 5507 5511 8945 8945 -0.00598536310712916 EAHFDFVY 8 Unmodified _EAHFDFVY_ 0 0 0 REV__ACSS2|p.F518Sfs*17|1|0.05|ENSG00000131069|chr20:34923327-34923334|TCAAGCAG/-|frameshift_variant REV__ACSS2|p.F518Sfs*17|1|0.05|ENSG00000131069|chr20:34923327-34923334|TCAAGCAG/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.9969177246094 3 343.155509 1026.4447 -0.44323 -0.0001521 0.18797 6.4503E-05 -0.25526 -8.7595E-05 343.15556899976997 55.931 2.1759 53.047 52.525 54.701 -2.8837 143 62 4 0 0 0 1.0265 1 10985 10985 3.9444 1.2092 1 39677000 + 8744 12923 5508 5512 8946 8946 -0.06746780890557602 EAHFLSMAH 9 Unmodified _EAHFLSMAH_ 0 0 0 tr|U7SEN4|U7SEN4_FUSNUGlutamate-1-semialdehyde2,1-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemLPE=3SV=1 tr|U7SEN4|U7SEN4_FUSNUGlutamate-1-semialdehyde2,1-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemLPE=3SV=1 tr|U7SEN4|U7SEN4_FUSNUGlutamate-1-semialdehyde2,1-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemLPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2628173828125 2 521.742376 1041.4702 -0.74933 -0.00039096 -0.70208 -0.0003663 -1.4514 -0.00075726 522.2416847762407 80.571 0.13689 76.731 76.664 76.801 -3.8392 5 3 2 0 0 0 0.60698 1 15301 15301 16.942 2.3606 1 567020 8745 25881 5509 5513 8947 8947 -0.04887629639779334 EAHGPLLGL 9 Unmodified _EAHGPLLGL_ 0 0 0 ENST00000229239.9_1_12:6643106-6643487:+|nuORF ENST00000229239.9_1_12:6643106-6643487:+|nuORF ENST00000229239.9_1_12:6643106-6643487:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75592041015625 2 453.75581 905.497067 -0.22721 -0.0001031 0.46366 0.00021039 0.23645 0.00010729 453.7560703207879 72.519 0.64243 69.209 68.884 69.526 -3.3107 37 17 3 0 0 0 0.54354 1 14189 14189 16.942 0 1 5001500 8746 8151 5510 5514 8948 8948 0.04053802243049631 EAHGTLNAT 9 Unmodified _EAHGTLNAT_ 0 0 0 REV__nc|ENSG00000100784|O75582-2|RPS6KA5 REV__nc|ENSG00000100784|O75582-2|RPS6KA5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 305.2066955566406 3 305.150646 912.430109 NaN NaN NaN NaN NaN NaN NaN 91.827 1 87.902 87.402 88.402 -3.9251 0 0 0 0.23508 1 17978 17978 2.7352 1.0826 1 + 8747 14739 5511 5515 8949 8949 -0.029608530387235987 EAHKIFEGL 9 Unmodified _EAHKIFEGL_ 0 0 0 NCOR1|p.P1637Qfs*19|1|0.14|ENSG00000141027|chr17:16065526-16065526|G/-|frameshift_variant;nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;NCOR1|p.R572Efs*18|1|0.07|ENSG00000141027|chr17:16121191-16121191|C/-|frameshift_variant;nc|ENSG00000141027|O75376-3|NCOR1;NCOR1|p.V322Wfs*4|1|0.32|ENSG00000141027|chr17:16146495-16146495|T/-|frameshift_variant NCOR1|p.P1637Qfs*19|1|0.14|ENSG00000141027|chr17:16065526-16065526|G/-|frameshift_variant NCOR1|p.P1637Qfs*19|1|0.14|ENSG00000141027|chr17:16065526-16065526|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.28125 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 108.95 1 104.57 104.07 105.07 -4.3776 0 0 0 0.23508 1 21471 21471 12.532 1.4171 1 8748 4343 5512 5516 8950 8950 0.025174564432290936 EAHKKEEL 8 Unmodified _EAHKKEEL_ 0 0 0 REV__ENSG00000109265|ENST00000682029|CRACD REV__ENSG00000109265|ENST00000682029|CRACD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 328.5030822753906 3 328.510063 982.50836 NaN NaN NaN NaN NaN NaN NaN 19.092 1 19.092 18.592 19.592 0 0 0 0 0.2386 1 3105 3105 0.0082765 0 1 + 8749 15158 5513 5517 8951 8951 0.016405795465175288 EAHKREWN 8 Unmodified _EAHKREWN_ 0 0 0 nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5;ENST00000443199.6_1_17:73623504-73629591:-|nuORF nc|ENSG00000108469|O94762-4|RECQL5 nc|ENSG00000108469|O94762-4|RECQL5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.07281494140625 3 357.177307 1068.51009 -0.055799 -1.993E-05 -0.039519 -1.4115E-05 -0.095317 -3.4045E-05 357.1779733244766 19.965 0.34729 18.568 18.412 18.76 -1.3966 12 9 2 0 0 0 1.0265 1 3336 3336 3.9444 0 1 673230 8750 2476 5514 5518 8952 8952 -0.021423666448527 EAHKREWN 8 Unmodified _EAHKREWN_ 0 0 0 nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5;ENST00000443199.6_1_17:73623504-73629591:-|nuORF nc|ENSG00000108469|O94762-4|RECQL5 nc|ENSG00000108469|O94762-4|RECQL5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 357.177307 1068.51009 -0.31012 -0.00011077 -2.9803 -0.0010645 -3.2904 -0.0011753 357.51035101204366 18.448 0.49146 18.448 18.195 18.687 0 -0.060061 -0.0012281 NaN 3.9444 38 13 4 NaN NaN NaN NaN 0 NaN NaN 0 2383900 8751 2476 5514 5518 -0.021423666448527 EAHNVESVA 9 Unmodified _EAHNVESVA_ 0 0 0 tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1 tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1 tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7424621582031 2 478.227613 954.440674 -0.039277 -1.8783E-05 -3.4262 -0.0016385 -3.4654 -0.0016573 478.2274929316342 29.161 0.87132 29.161 28.738 29.61 0 33 24 2 0 0 0 0.40602 2 5230 5230;5242 25.399 1.3787 1 2441100 8752 26129 5515 5519 8953;8954 8953 -0.03836870384282065 EAHPLASLAA 10 Unmodified _EAHPLASLAA_ 0 0 0 ENST00000471809.5_1_22:37159849-37172159:-|nuORF;ENST00000476548.1_1_22:37168757-37172063:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2637939453125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 87.466 1 83.739 83.239 84.239 -3.727 0 0 0 0.22559 1 17104 17104 17.113 0 1 8753 10216 5516 5520 8955 8955 0.023328834091330464 EAHRILEGFQP 11 Unmodified _EAHRILEGFQP_ 0 0 0 ENSG00000112293|ENST00000230036|GPLD1 ENSG00000112293|ENST00000230036|GPLD1 ENSG00000112293|ENST00000230036|GPLD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 432.8949890136719 3 432.894688 1295.66223 NaN NaN NaN NaN NaN NaN NaN 30.167 1 30.167 29.667 30.667 0 0 0 0 0.23698 1 5416 5416 2.6312 0.88896 1 8754 2682 5517 5521 8956 8956 0.026229893120444103 EAHRQAEQL 9 Unmodified _EAHRQAEQL_ 0 0 0 REV__ENSG00000077420|ENST00000376236|APBB1IP REV__ENSG00000077420|ENST00000376236|APBB1IP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2706298828125 2 541.272887 1080.53122 NaN NaN NaN NaN NaN NaN NaN 124.04 1 124.04 123.54 124.54 0 0 0 0 0.19704 1 24453 24453 1.2148 0 1 + 8755 14365 5518 5522 8957 8957 -0.005824013360097524 EAHRVRRH 8 Unmodified _EAHRVRRH_ 0 0 0 COL20A1|p.R561Efs*168|2|0.4|ENSG00000101203|chr20:63311924-63311925|-/C|frameshift_variant COL20A1|p.R561Efs*168|2|0.4|ENSG00000101203|chr20:63311924-63311925|-/C|frameshift_variant COL20A1|p.R561Efs*168|2|0.4|ENSG00000101203|chr20:63311924-63311925|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 354.21209716796875 3 354.200557 1059.57984 NaN NaN NaN NaN NaN NaN NaN 20.556 1 18.835 18.335 19.335 -1.7211 0 0 0 0.21486 1 3170 3170 1.6526 0 1 8756 623 5519 5523 8958 8958 0.052435568144119316 EAHSPLVP 8 Unmodified _EAHSPLVP_ 0 0 0 ENST00000567274.5_1_15:43103896-43132622:-|nuORF ENST00000567274.5_1_15:43103896-43132622:-|nuORF ENST00000567274.5_1_15:43103896-43132622:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.23834228515625 2 425.226885 848.439217 NaN NaN NaN NaN NaN NaN NaN 82.396 1 78.788 78.288 79.288 -3.6079 0 0 0 0.21486 1 16104 16104 9.3474 0.75416 1 8757 11381 5520 5524 8959 8959 0.008935403176110412 EAHTCMSDEQK 11 Unmodified _EAHTCMSDEQK_ 0 0 0 REV__nc|ENSG00000112584|Q96EK7-2|FAM120B REV__nc|ENSG00000112584|Q96EK7-2|FAM120B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.13970947265625 3 426.841155 1277.50164 NaN NaN NaN NaN NaN NaN NaN 31.02 1 28.994 28.494 29.494 -2.0264 0 0 0 0.23698 1 5340 5340 2.6312 0.88896 1 + 8758 15303 5521 5525 8960 8960 -0.12601469458695647 EAHTPIQAI 9 Unmodified _EAHTPIQAI_ 0 0 0 REV__ZKSCAN4|p.N458Mfs*81|1|0.3|ENSG00000187626|chr6:28245381-28245381|T/-|frameshift_variant REV__ZKSCAN4|p.N458Mfs*81|1|0.3|ENSG00000187626|chr6:28245381-28245381|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2653503417969 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 49.53 1 49.53 49.03 50.03 0 0 0 0 0.19711 1 9367 9367 1.6919 0 1 + 8759 19100 5522 5526 8961 8961 0.023328834091330464 EAHVAAVPW 9 Unmodified _EAHVAAVPW_ 0 0 0 ENST00000426654.6_1_16:69599384-69602431:+|nuORF ENST00000426654.6_1_16:69599384-69602431:+|nuORF ENST00000426654.6_1_16:69599384-69602431:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2554931640625 2 490.253434 978.492316 NaN NaN NaN NaN NaN NaN NaN 65.864 1 62.817 62.317 63.317 -3.047 0 0 0 0.23411 1 12755 12755 13.508 4.1604 1 8760 9730 5523 5527 8962 8962 0.002209181002740479 EAHVNGPPV 9 Unmodified _EAHVNGPPV_ 0 0 0 REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2398681640625 2 460.235242 918.45593 0.16597 7.6386E-05 0.032699 1.5049E-05 0.19867 9.1435E-05 460.2353299272901 38.729 0.70168 36.324 36.021 36.723 -2.4049 38 19 3 0 0 0 0.66537 1 6838 6838 8.5933 1.304 1 2139400 + 8761 14238 5524 5528 8963 8963 -0.006559587964261482 EAHWLPPEALH 11 Unmodified _EAHWLPPEALH_ 0 0 0 REV__ENST00000477523.1_1_2:110602660-110613470:+|nuORF REV__ENST00000477523.1_1_2:110602660-110613470:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 433.8887023925781 3 433.887533 1298.64077 NaN NaN NaN NaN NaN NaN NaN 34.821 1 32.568 32.068 33.068 -2.2527 0 0 0 0.23689 1 6116 6116 2.8433 0.4085 1 + 8762 22120 5525 5529 8964 8964 0.003396042833401225 EAHYDWNPK 9 Unmodified _EAHYDWNPK_ 0 0 0 REV__ENSG00000135900|ENST00000258383|MRPL44 REV__ENSG00000135900|ENST00000258383|MRPL44 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7247009277344 3 387.177084 1158.50942 -0.23335 -9.0348E-05 0.24586 9.5193E-05 0.012513 4.8448E-06 387.177113114491 45.944 0.97408 43.103 42.512 43.486 -2.8409 40 27 2 0 0 0 0.8799 1 8587 8587 0.96228 0 1 1073100 + 8763 16295 5526 5530 8965 8965 -0.06349206084587422 EAIAKQRL 8 Unmodified _EAIAKQRL_ 0 0 0 REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16998291015625 3 310.190665 927.550165 -0.4508 -0.00013983 0.47874 0.0001485 0.027943 8.6677E-06 310.19076683408156 24.059 0.3347 24.059 23.899 24.234 0 15 9 2 0 0 0 0.66265 1 4146 4146 13.906 0 1 1150600 + 8764 19856 5527 5531 8966 8966 0.08349180025709302 EAIAKQRL 8 Unmodified _EAIAKQRL_ 0 0 0 REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 310.190665 927.550165 -0.4508 -0.00013983 0.47874 0.0001485 0.027943 8.6677E-06 310.19076683408156 24.059 0.3347 24.059 23.899 24.234 0 0.09541 0.00023325 NaN 13.906 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1150600 + 8765 19856 5527 5531 0.08349180025709302 EAIAKQRL 8 Unmodified _EAIAKQRL_ 0 0 0 REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 310.190665 927.550165 0.090883 2.8191E-05 -0.42142 -0.00013072 -0.33053 -0.00010253 310.1904721746079 25.588 0.27648 23.954 23.752 24.029 -1.6347 -0.0099394 -0.00060441 NaN 13.906 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1002400 + 8766 19856 5527 5531 0.08349180025709302 EAICKEQHL 9 Unmodified _EAICKEQHL_ 0 0 0 APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant;APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant;APOB|p.G1921Efs*13|1|0.19|ENSG00000084674|chr2:21011106-21011106|C/-|frameshift_variant;APOB|p.Y2149Vfs*2|2|0.29|ENSG00000084674|chr2:21010424-21010425|-/T|frameshift_variant;APOB|p.M1189*|1|0.34|ENSG00000084674|chr2:21015204-21015204|T/-|frameshift_variant;APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant;APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55975341796875 3 357.51482 1069.52263 0.33028 0.00011808 -0.36669 -0.0001311 -0.036411 -1.3017E-05 357.5146386690755 22.266 0.62391 20.792 20.413 21.037 -1.4742 32 17 2 0 0 0 0.75263 1 3749 3749 3.8763 0.27984 1 1008800 8767 185;184 5528 5532 8967 8967 -0.009350912968329794 EAICPRKG 8 Unmodified _EAICPRKG_ 0 0 0 REV__ENST00000375571.5_1_20:31434506-31436479:+|nuORF REV__ENST00000375571.5_1_20:31434506-31436479:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2361755371094 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 70.887 1 67.42 66.92 67.92 -3.467 0 0 0 0.21486 1 13429 13429 7.9102 2.1497 1 + 8768 21065 5529 5533 8968 8968 0.012492891941178641 EAICSREPQLY 11 Unmodified _EAICSREPQLY_ 0 0 0 REV__nc|ENSG00000147130|Q14202-2|ZMYM3 REV__nc|ENSG00000147130|Q14202-2|ZMYM3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2189636230469 3 436.879939 1307.61799 NaN NaN NaN NaN NaN NaN NaN 43.198 1 40.432 39.932 40.932 -2.7661 0 0 0 0.23698 1 7794 7794 1.3296 0 1 + 8769 16920 5530 5534 8969 8969 -0.023517828964486398 EAICSSLKAY 10 Unmodified _EAICSSLKAY_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7730102539062 2 542.7708 1083.52705 0.44209 0.00023996 -2.5441 -0.0013809 -2.102 -0.0011409 542.7689527489924 122.42 1.0278 117.88 117.28 118.3 -4.5476 60 28 3 0 0 0 0.63858 1 24193 24193 17.113 0 1 6199200 8770 2220 5531 5535 8970 8970 -0.011376268739240913 EAIEARLRE 9 Unmodified _EAIEARLRE_ 0 0 0 REV__ENSG00000017797|ENST00000383432|RALBP1 REV__ENSG00000017797|ENST00000383432|RALBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7803344726562 2 543.798737 1085.58292 0.057605 3.1326E-05 0.093417 5.08E-05 0.15102 8.2126E-05 543.7989652413855 24.822 0.41053 23.288 23.094 23.504 -1.5342 23 11 3 0 0 0 0.81359 1 4087 4087 16.149 0 1 818940 + 8771 13968 5532 5536 8971 8971 0.043553423578941874 EAIEARLRE 9 Unmodified _EAIEARLRE_ 0 0 0 REV__ENSG00000017797|ENST00000383432|RALBP1 REV__ENSG00000017797|ENST00000383432|RALBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.798737 1085.58292 0.35865 0.00019504 -0.10802 -5.8738E-05 0.25064 0.0001363 543.7987472612689 23.464 0.35322 23.464 23.199 23.552 0 0.14782 9.7161E-05 NaN 16.149 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 881230 + 8772 13968 5532 5536 0.043553423578941874 EAIEARLRE 9 Unmodified _EAIEARLRE_ 0 0 0 REV__ENSG00000017797|ENST00000383432|RALBP1 REV__ENSG00000017797|ENST00000383432|RALBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.798737 1085.58292 1.2867 0.00069972 -0.97232 -0.00052875 0.3144 0.00017097 543.7981436013406 24.95 0.34719 23.302 23.095 23.442 -1.6482 -0.013877 -0.00084285 NaN 16.149 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 606210 + 8773 13968 5532 5536 0.043553423578941874 EAIEPKDN 8 Unmodified _EAIEPKDN_ 0 0 0 nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-6|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22479248046875 2 458.224539 914.434526 0.25548 0.00011707 0.17969 8.2339E-05 0.43517 0.00019941 458.22448476624925 34.413 0.5815 34.413 34.108 34.689 0 27 16 2 0 0 0 0.68128 1 6311 6311 16.942 3.0362 1 889230 8774 12390 5533 5537 8972 8972 -0.026113886158100286 EAIEPKDN 8 Unmodified _EAIEPKDN_ 0 0 0 nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-6|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2375183105469 2 458.224539 914.434526 0.060728 2.7827E-05 0.24931 0.00011424 0.31004 0.00014207 458.2245958989299 36.76 0.51484 34.413 34.14 34.655 -2.3479 29 14 3 0 0 0 0.68128 1 6479 6479 16.942 2.3606 1 1434800 8775 12390 5533 5537 8973 8973 -0.026113886158100286 EAIERPSN 8 Unmodified _EAIERPSN_ 0 0 0 REV__ENSG00000196653|ENST00000436624|ZNF502 REV__ENSG00000196653|ENST00000436624|ZNF502 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2288818359375 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 80.191 1 76.387 75.887 76.887 -3.8048 0 0 0 0.23025 1 15217 15217 0.68139 0.55358 1 + 8776 19269 5534 5538 8974 8974 -0.0148856652166387 EAIESYYQR 9 Unmodified _EAIESYYQR_ 0 0 0 ENST00000567573.5_1_15:36871929-36940867:+|nuORF;ENSG00000186073|ENST00000566621|CDIN1;ENST00000570265.5_1_15:36871929-37039277:+|nuORF ENST00000567573.5_1_15:36871929-36940867:+|nuORF ENST00000567573.5_1_15:36871929-36940867:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7207336425781 3 386.852377 1157.5353 -0.053435 -2.0672E-05 -0.23553 -9.1114E-05 -0.28896 -0.00011179 386.8522658923022 23.472 0.55693 22.019 21.749 22.306 -1.4535 55 15 5 0 0 0 0.63326 1 3761 3761 10.8 4.1691 1 28545000 8777 7031 5535 5539 8975 8975 -0.037163566329581954 EAIESYYQR 9 Unmodified _EAIESYYQR_ 0 0 0 ENST00000567573.5_1_15:36871929-36940867:+|nuORF;ENSG00000186073|ENST00000566621|CDIN1;ENST00000570265.5_1_15:36871929-37039277:+|nuORF ENST00000567573.5_1_15:36871929-36940867:+|nuORF ENST00000567573.5_1_15:36871929-36940867:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 386.852377 1157.5353 -0.10028 -3.8795E-05 -0.32112 -0.00012423 -0.4214 -0.00016302 386.85224233513605 21.889 0.58807 21.889 21.635 22.223 0 -0.10842 0.00024216 NaN 10.8 53 16 5 NaN NaN NaN NaN 0 NaN NaN 0 23963000 8778 7031 5535 5539 -0.037163566329581954 EAIESYYQR 9 Unmodified _EAIESYYQR_ 0 0 0 ENST00000567573.5_1_15:36871929-36940867:+|nuORF;ENSG00000186073|ENST00000566621|CDIN1;ENST00000570265.5_1_15:36871929-37039277:+|nuORF ENST00000567573.5_1_15:36871929-36940867:+|nuORF ENST00000567573.5_1_15:36871929-36940867:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 386.852377 1157.5353 0.63081 0.00024403 -0.78934 -0.00030536 -0.15853 -6.1326E-05 386.8520637741805 23.638 0.62898 22.085 21.763 22.392 -1.5532 0.087179 -0.00030123 NaN 10.8 61 17 5 NaN NaN NaN NaN 0 NaN NaN 0 25593000 8779 7031 5535 5539 -0.037163566329581954 EAIGGQAGRG 10 Unmodified _EAIGGQAGRG_ 0 0 0 REV__ENSG00000125872|ENST00000378858|LRRN4 REV__ENSG00000125872|ENST00000378858|LRRN4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2367248535156 2 458.235773 914.456993 NaN NaN NaN NaN NaN NaN NaN 24.196 1 22.642 22.142 23.142 -1.5532 0 0 0 0.22588 1 4205 4205 11.495 2.1116 1 + 8780 15840 5536 5540 8976 8976 -0.003657444275177113 EAIGKIPAA 9 Unmodified _EAIGKIPAA_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2339782714844 2 435.258185 868.501818 -0.30021 -0.00013067 0.3138 0.00013658 0.013595 5.9174E-06 435.25826904768235 34.526 0.72644 32.209 31.913 32.639 -2.3175 63 20 5 0 0 0 0.55979 1 6329 6329 15.847 4.2069 1 81849000 8781 6411 5537 5541 8977 8977 0.062306863857997996 EAIGKIPAA 9 Unmodified _EAIGKIPAA_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 435.258185 868.501818 0.16684 7.2617E-05 -0.17157 -7.4677E-05 -0.004734 -2.0605E-06 435.2580773488595 32.312 0.83511 32.312 31.945 32.78 0 0.078658 -0.00010166 NaN 15.847 74 23 4 NaN NaN NaN NaN 0 NaN NaN 0 60120000 8782 6411 5537 5541 0.062306863857997996 EAIGKIPAA 9 Unmodified _EAIGKIPAA_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 435.258185 868.501818 0.15312 6.6647E-05 -0.14905 -6.4875E-05 0.0040725 1.7726E-06 435.25808946537893 34.42 0.90725 32.167 31.836 32.743 -2.2527 -0.066799 -8.2052E-05 NaN 15.847 77 25 5 NaN NaN NaN NaN 0 NaN NaN 0 84769000 8783 6411 5537 5541 0.062306863857997996 EAIGNRTRY 9 Unmodified _EAIGNRTRY_ 0 0 0 REV__PDE6A|p.A811Gfs*10|1|0.37|ENSG00000132915|chr5:149863193-149863193|G/-|frameshift_variant REV__PDE6A|p.A811Gfs*10|1|0.37|ENSG00000132915|chr5:149863193-149863193|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2127685546875 3 360.524595 1078.55196 -0.78084 -0.00028151 0.14055 5.0671E-05 -0.64029 -0.00023084 360.5249185924749 25.597 0.55684 23.743 23.499 24.056 -1.8534 23 14 2 0 0 0 0.8825 1 4261 4261 0.23584 0 1 407110 + 8784 16142 5538 5542 8978 8978 0.01582189043665494 EAIHHNKI 8 Unmodified _EAIHHNKI_ 0 0 0 ENSG00000166800|ENST00000280706|LDHAL6A;LDHAL6A|p.V234Sfs*7|1|0.31|ENSG00000166800|chr11:18476484-18476485|-/A|frameshift_variant;LDHAL6A|p.N156Tfs*33|1|0.34|ENSG00000166800|chr11:18475510-18475510|A/-|frameshift_variant ENSG00000166800|ENST00000280706|LDHAL6A ENSG00000166800|ENST00000280706|LDHAL6A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2513732910156 2 481.264333 960.514114 NaN NaN NaN NaN NaN NaN NaN 53.141 1 50.257 49.757 50.757 -2.8837 0 0 0 0.21486 1 10120 10120 11.64 0.81637 1 8785 5747 5539 5543 8979 8979 0.03227722848839676 EAIIDNRK 8 Unmodified _EAIIDNRK_ 0 0 0 tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1 tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1 tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2427673339844 2 479.769448 957.524344 -0.09259 -4.4422E-05 -0.10673 -5.1208E-05 -0.19933 -9.563E-05 479.76939735012746 34.2 0.45433 31.882 31.664 32.118 -2.3175 37 12 4 0 0 0 0.72428 1 6294 6294 10.824 0.64053 1 5592800 8786 26461 5540 5544 8980 8980 0.04388285783431911 EAILKKKIG 9 Unmodified _EAILKKKIG_ 0 0 0 nc|ENSG00000175497|Q8N608-4|DPP10;nc|ENSG00000175497|Q8N608-2|DPP10;ENSG00000175497|ENST00000410059|DPP10;nc|ENSG00000175497|Q8N608-3|DPP10 nc|ENSG00000175497|Q8N608-4|DPP10 nc|ENSG00000175497|Q8N608-4|DPP10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 500.7463073730469 2 500.331685 998.648816 0.048732 2.4382E-05 3.4404 0.0017213 3.4891 0.0017457 500.83486144623924 141.55 0.17586 136.9 136.81 136.99 -4.6493 6 4 2 0 0 0 0.61568 1 27946 27946 0.073264 0.029476 1 2204800 8787 6415 5541 5545 8981 8981 0.1494378327074628 EAILRPRVK 9 Unmodified _EAILRPRVK_ 0 0 0 REV__ENSG00000074071|ENST00000397375|MRPS34 REV__ENSG00000074071|ENST00000397375|MRPS34 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2626953125 2 541.345658 1080.67676 NaN NaN NaN NaN NaN NaN NaN 42.584 1 39.978 39.478 40.478 -2.606 0 0 0 0.23508 1 7662 7662 4.3292 1.7518 1 + 8788 14310 5542 5546 8982 8982 0.139651062508392 EAILSWQKQQE 11 Unmodified _EAILSWQKQQE_ 0 0 0 ENSG00000153446|ENST00000472572|C16orf89;nc|nan|Q6UX73|C16orf89 ENSG00000153446|ENST00000472572|C16orf89 ENSG00000153446|ENST00000472572|C16orf89 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76953125 3 453.90162 1358.68303 -0.15369 -6.9761E-05 0.020338 9.2313E-06 -0.13335 -6.053E-05 453.901668945142 47.016 0.54946 44.175 43.94 44.489 -2.8409 36 15 3 0 0 0 0.78057 1 8853 8853 6.2344 3.3911 1 2388300 8789 4970 5543 5547 8983 8983 0.018035349010233404 EAIPLPPTKKR 11 Unmodified _EAIPLPPTKKR_ 0 0 0 ENSG00000117877|ENST00000309424|POLR1G;nc|ENSG00000117877|O15446-2|POLR1G ENSG00000117877|ENST00000309424|POLR1G ENSG00000117877|ENST00000309424|POLR1G MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 417.22369384765625 3 417.259079 1248.75541 NaN NaN NaN NaN NaN NaN NaN 60.75 1 57.436 56.936 57.936 -3.3139 0 0 0 0.2367 1 11318 11318 1.2148 0.51716 1 8790 3007 5544 5548 8984 8984 0.1409791376524936 EAIPPPQMPD 10 Unmodified _EAIPPPQMPD_ 0 0 0 REV__ENSG00000159069|ENST00000325285|FBXW5 REV__ENSG00000159069|ENST00000325285|FBXW5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7701416015625 2 547.762975 1093.5114 NaN NaN NaN NaN NaN NaN NaN 50.674 1 47.622 47.122 48.122 -3.0517 0 0 0 0.22588 1 9317 9317 9.3831 0.78985 1 + 8791 17354 5545 5549 8985 8985 -0.031619133909771335 EAIPTILLA 9 Unmodified _EAIPTILLA_ 0 0 0 ENST00000524591.6_1_8:12878711-12878915:+|nuORF ENST00000524591.6_1_8:12878711-12878915:+|nuORF ENST00000524591.6_1_8:12878711-12878915:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1594543457031 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 120.86 1 120.86 120.36 121.36 0 0 0 0 0.23508 1 23822 23822 1.0715 0 1 8792 10885 5546 5550 8986 8986 0.09188412734158646 EAIQILLQLY 10 Unmodified _EAIQILLQLY_ 0 0 0 TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant;TRANK1|p.P972Qfs*12|1|0.34|ENSG00000168016|chr3:36856675-36856675|G/-|frameshift_variant;ENSG00000168016|ENST00000645898|TRANK1;TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant;ENSG00000168016|ENST00000645898|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.286865234375 2 602.352814 1202.69108 NaN NaN NaN NaN NaN NaN NaN 105.57 1 101.47 100.97 101.97 -4.0913 0 0 0 0.22588 1 20307 20307 3.9444 0.3479 1 8793 5869;26516 5547 5551 8987 8987 0.09783713888487 EAIQLTPAH 9 Unmodified _EAIQLTPAH_ 0 0 0 REV__ENSG00000102452|ENST00000251127|NALCN REV__ENSG00000102452|ENST00000251127|NALCN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2643127441406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 97.129 1 97.129 96.629 97.629 0 0 0 0 0.21065 1 19032 19032 20.454 1.1966 1 + 8794 14840 5548 5552 8988 8988 0.023328834091216777 EAIQYLSKI 9 Unmodified _EAIQYLSKI_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2821044921875 2 532.802957 1063.59136 0.25403 0.00013535 -3.9316 -0.0020948 -3.6776 -0.0019594 533.3009078118642 161.3 0.14592 156.51 156.42 156.56 -4.7952 5 3 2 0 0 0 0.60061 1 32068 32068 13.042 2.2185 1 1077000 8795 2573 5549 5553 8989 8989 0.062108962745242025 EAIRACWL 8 Unmodified _EAIRACWL_ 0 0 0 ENST00000368039.2_1_1:160771962-160772262:+|nuORF ENST00000368039.2_1_1:160771962-160772262:+|nuORF ENST00000368039.2_1_1:160771962-160772262:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24945068359375 2 481.249837 960.485122 NaN NaN NaN NaN NaN NaN NaN 90.741 1 90.741 90.241 91.241 0 0 0 0 0.22636 1 17730 17730 1.7423 0 1 8796 9087 5550 5554 8990 8990 0.0032986222820454714 EAIRLVTL 8 Unmodified _EAIRLVTL_ 0 0 0 STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.238525390625 2 457.78711 913.559667 NaN NaN NaN NaN NaN NaN NaN 94.597 1 90.716 90.216 91.216 -3.881 0 0 0 0.21486 1 18150 18150 8.5933 0 1 8797 3011 5551 5555 8991 8991 0.0994294831125444 EAISEGYF 8 Unmodified _EAISEGYF_ 0 0 0 ENSG00000219626|ENST00000615575|FAM228B ENSG00000219626|ENST00000615575|FAM228B ENSG00000219626|ENST00000615575|FAM228B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.226318359375 2 458.208358 914.402163 NaN NaN NaN NaN NaN NaN NaN 105.07 1 100.85 100.35 101.35 -4.2183 0 0 0 0.22934 1 20672 20672 0.25148 0 1 8798 7759 5552 5556 8992 8992 -0.05846176018792448 EAISMRCP 8 Unmodified _EAISMRCP_ 0 0 0 REV__nc|ENSG00000168397|Q9Y4P1-6|ATG4B REV__nc|ENSG00000168397|Q9Y4P1-6|ATG4B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7662048339844 2 453.71223 905.409908 NaN NaN NaN NaN NaN NaN NaN 97.939 1 93.669 93.169 94.169 -4.2692 0 0 0 0.20294 1 18715 18715 23.148 2.2772 1 + 8799 18021 5553 5557 8993 8993 -0.04658063294527892 EAISNQVI 8 Unmodified _EAISNQVI_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2235107421875 2 437.23745 872.460347 0.52873 0.00023118 -1.3532 -0.00059166 -0.82443 -0.00036047 437.23694120197274 78.07 0.45827 78.07 77.876 78.334 0 15 12 2 0 0 0 8448 1 15238 15238 0.25148 0 1 862280 8800 7191 5554 5558 8994 8994 0.019015056264720442 EAISNQVI 8 Unmodified _EAISNQVI_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2356872558594 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 62.073 1 62.073 61.573 62.573 0 0 0 0 0.21486 1 11914 11914 9.3474 0 1 8801 7191 5554 5558 8995 8995 0.019015056264720442 EAISNQVI 8 Unmodified _EAISNQVI_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2169189453125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 66.77 1 66.77 66.27 67.27 0 0 0 0 0.21323 1 12899 12899 14.582 0 1 8802 7191 5554 5558 8996 8996 0.019015056264720442 EAISNQVI 8 Unmodified _EAISNQVI_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21673583984375 2 437.23745 872.460347 0.0759 3.3186E-05 -0.17706 -7.7419E-05 -0.10116 -4.4233E-05 437.23732306284353 83.392 0.56149 79.518 79.152 79.714 -3.8736 23 15 2 0 0 0 0.40222 1 15795 15795 32.305 1.6689 1 1735100 8803 7191 5554 5558 8997 8997 0.019015056264720442 EAISNQVI 8 Unmodified _EAISNQVI_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2353820800781 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.309 1 60.052 59.552 60.552 -3.2567 0 0 0 0.21486 1 11877 11877 9.3474 0 1 8804 7191 5554 5558 8998 8998 0.019015056264720442 EAISNQVI 8 Unmodified _EAISNQVI_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2357482910156 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 66.069 1 62.786 62.286 63.286 -3.2832 0 0 0 0.21486 1 12430 12430 9.3474 0 1 8805 7191 5554 5558 8999 8999 0.019015056264720442 EAISNQVI 8 Unmodified _EAISNQVI_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2362060546875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 68.964 1 65.574 65.074 66.074 -3.3903 0 0 0 0.21486 1 13032 13032 9.3474 0 1 8806 7191 5554 5558 9000 9000 0.019015056264720442 EAISNQVI 8 Unmodified _EAISNQVI_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2164001464844 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 82.003 1 78.315 77.815 78.815 -3.6879 0 0 0 0.20294 1 15632 15632 23.148 0 1 8807 7191 5554 5558 9001 9001 0.019015056264720442 EAITTRTQ 8 Unmodified _EAITTRTQ_ 0 0 0 REV__ENSG00000173442|ENST00000309295|EHBP1L1 REV__ENSG00000173442|ENST00000309295|EHBP1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2474060058594 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 77.372 1 73.713 73.213 74.213 -3.6588 0 0 0 0.21292 1 14729 14729 14.838 0 1 + 8808 18355 5555 5559 9002 9002 0.014560065124328503 EAIVAYTLATA 11 Unmodified _EAIVAYTLATA_ 0 0 0 sp|F5HCM1|VIE1_HCMVMImmediateearlyproteinIE1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL123PE=3SV=1;sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1 sp|F5HCM1|VIE1_HCMVMImmediateearlyproteinIE1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL123PE=3SV=1 sp|F5HCM1|VIE1_HCMVMImmediateearlyproteinIE1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL123PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2066345214844 3 374.87289 1121.59684 -0.49587 -0.00018589 0.45601 0.00017095 -0.039855 -1.4941E-05 374.8730908244092 67.555 0.52719 67.555 67.262 67.79 0 26 14 2 0 0 0 0.79428 1 13100 13100 4.4062 0.46175 1 1552000 8809 25727 5556 5560 9003 9003 0.04090575066334168 EAIVCLKAP 9 Unmodified _EAIVCLKAP_ 0 0 0 REV__ENSG00000171497|ENST00000307720|PPID REV__ENSG00000171497|ENST00000307720|PPID MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1797790527344 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 108.5 1 104.18 103.68 104.68 -4.32 0 0 0 0.23508 1 21380 21380 2.4985 1.0166 1 + 8810 18231 5557 5561 9004 9004 0.04727899685201464 EAIYCTKE 8 Unmodified _EAIYCTKE_ 0 0 0 RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant;ENSG00000174373|ENST00000680220|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENST00000554704.5_1_14:36176787-36221314:-|nuORF;ENST00000443361.1_1_9:108283251-108284913:+|nuORF;RALGAPA1|p.N609Ifs*2|1|0.26|ENSG00000174373|chr14:35725064-35725064|T/-|frameshift_variant;RALGAPA1|p.N609Kfs*36|1|0.25|ENSG00000174373|chr14:35725063-35725064|-/T|frameshift_variant;RALGAPA1|p.H698Afs*9|1|0.27|ENSG00000174373|chr14:35723040-35723041|-/T|frameshift_variant;ENST00000554652.5_1_14:36147090-36221314:-|nuORF;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1 RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7234191894531 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 39.904 1 39.904 39.404 40.404 0 0 0 0 0.21039 1 7413 7413 16.942 4.4107 1 8811 6346 5558 5562 9005 9005 -0.04741560345121343 EAKAGSSTLP 10 Unmodified _EAKAGSSTLP_ 0 0 0 ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1;ARFGEF1|p.F501Lfs*19|1|0.46|ENSG00000066777|chr8:67271771-67271771|A/-|frameshift_variant;ARFGEF1|p.G612Vfs*2|1|0.33|ENSG00000066777|chr8:67266964-67266964|T/-|frameshift_variant;ARFGEF1|p.K888Rfs*10|1|0.36|ENSG00000066777|chr8:67253485-67253486|TT/-|frameshift_variant ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2544860839844 2 480.753464 959.492375 0.039811 1.9139E-05 -0.79747 -0.00038338 -0.75765 -0.00036424 480.75307765865807 26.882 1.0608 26.882 26.189 27.25 0 39 30 2 0 0 0 0.53552 1 4727 4727 22.736 3.4793 1 690350 8812 197 5559 5563 9006 9006 0.011008733096218748 EAKAGSSTLP 10 Unmodified _EAKAGSSTLP_ 0 0 0 ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1;ARFGEF1|p.F501Lfs*19|1|0.46|ENSG00000066777|chr8:67271771-67271771|A/-|frameshift_variant;ARFGEF1|p.G612Vfs*2|1|0.33|ENSG00000066777|chr8:67266964-67266964|T/-|frameshift_variant;ARFGEF1|p.K888Rfs*10|1|0.36|ENSG00000066777|chr8:67253485-67253486|TT/-|frameshift_variant ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2549743652344 2 480.753464 959.492375 0.30401 0.00014615 -0.69523 -0.00033424 -0.39123 -0.00018808 480.7529714587665 28.519 1.0496 26.764 26.211 27.26 -1.7552 42 29 2 0 0 0 0.57807 1 4795 4795 20.415 5.5763 1 552470 8813 197 5559 5563 9007 9007 0.011008733096218748 EAKAGSSTLP 10 Unmodified _EAKAGSSTLP_ 0 0 0 ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1;ARFGEF1|p.F501Lfs*19|1|0.46|ENSG00000066777|chr8:67271771-67271771|A/-|frameshift_variant;ARFGEF1|p.G612Vfs*2|1|0.33|ENSG00000066777|chr8:67266964-67266964|T/-|frameshift_variant;ARFGEF1|p.K888Rfs*10|1|0.36|ENSG00000066777|chr8:67253485-67253486|TT/-|frameshift_variant ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2547607421875 2 480.753464 959.492375 0.31142 0.00014971 -0.82097 -0.00039468 -0.50955 -0.00024497 480.75295994801303 28.663 1.2197 26.667 26.134 27.354 -1.9962 45 34 2 0 0 0 0.65108 1 4841 4841 16.149 1.3108 1 416560 8814 197 5559 5563 9008 9008 0.011008733096218748 EAKAPLNM 8 Unmodified _EAKAPLNM_ 0 0 0 ENSG00000164626|ENST00000359534|KCNK5;KCNK5|p.G452V|1|0.28|ENSG00000164626|chr6:39191035-39191035|C/A|missense_variant ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2293701171875 2 437.228571 872.442588 NaN NaN NaN NaN NaN NaN NaN 69.389 1 69.389 68.889 69.889 0 0 0 0 0.21039 1 13433 13433 16.942 0 1 8815 5556 5560 5564 9009 9009 0.0012646709996033678 EAKAVDIPH 9 Unmodified _EAKAVDIPH_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2640380859375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 14.524 1 14.524 14.024 15.024 0 0 0 0 0.23508 1 2167 2167 11.64 4.3511 1 8816 7487 5561 5565 9010 9010 0.023328834091330464 EAKCSRAVP 9 Unmodified _EAKCSRAVP_ 0 0 0 ENST00000301732.9_1_16:2358503-2367727:-|nuORF ENST00000301732.9_1_16:2358503-2367727:-|nuORF ENST00000301732.9_1_16:2358503-2367727:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25146484375 2 480.750201 959.48585 -0.12699 -6.1048E-05 -0.22755 -0.00010939 -0.35454 -0.00017044 480.75020155751287 21.95 0.28082 20.566 20.383 20.664 -1.3847 12 7 2 0 0 0 0.7009 1 3490 3490 6.2058 0 1 327710 8817 8564 5562 5566 9011 9011 0.004486568772449573 EAKDFGMLM 9 Unmodified _EAKDFGMLM_ 0 0 0 REV__ENSG00000120029|ENST00000370033|ARMH3 REV__ENSG00000120029|ENST00000370033|ARMH3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2630004882812 2 521.240821 1040.46709 0.06345 3.3073E-05 -0.18889 -9.8457E-05 -0.12544 -6.5385E-05 521.240371233032 31.59 0.56053 29.359 28.99 29.551 -2.2305 39 15 3 0 0 0 0.67531 1 5704 5704 7.9102 0 1 2860400 + 8818 15606 5563 5567 9012 9012 -0.05152640808819342 EAKDVKGT 8 Unmodified _EAKDVKGT_ 0 0 0 ENST00000367203.8_1_1:204082043-204086879:+|nuORF;SOX13|p.S324Qfs*23|1|0.18|ENSG00000143842|chr1:204122337-204122338|-/C|frameshift_variant;SOX13|p.T329Rfs*77|1|0.14|ENSG00000143842|chr1:204122356-204122356|C/-|frameshift_variant;SOX13|p.S324Afs*82|1|0.39|ENSG00000143842|chr1:204122338-204122338|C/-|frameshift_variant;SOX13|p.P337Rfs*69|2|0.13|ENSG00000143842|chr1:204122380-204122380|C/-|frameshift_variant;ENSG00000143842|ENST00000367204|SOX13 ENST00000367203.8_1_1:204082043-204086879:+|nuORF ENST00000367203.8_1_1:204082043-204086879:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.240234375 2 424.229625 846.444697 -0.2263 -9.6003E-05 0.42515 0.00018036 0.19885 8.4357E-05 424.2297591100684 18.322 0.4495 17.011 16.795 17.245 -1.3109 32 12 4 0 0 0 0.77935 1 2946 2946 5.2307 0 1 6922400 8819 4522 5564 5568 9013 9013 0.015332191094330483 EAKDVKGT 8 Unmodified _EAKDVKGT_ 0 0 0 ENST00000367203.8_1_1:204082043-204086879:+|nuORF;SOX13|p.S324Qfs*23|1|0.18|ENSG00000143842|chr1:204122337-204122338|-/C|frameshift_variant;SOX13|p.T329Rfs*77|1|0.14|ENSG00000143842|chr1:204122356-204122356|C/-|frameshift_variant;SOX13|p.S324Afs*82|1|0.39|ENSG00000143842|chr1:204122338-204122338|C/-|frameshift_variant;SOX13|p.P337Rfs*69|2|0.13|ENSG00000143842|chr1:204122380-204122380|C/-|frameshift_variant;ENSG00000143842|ENST00000367204|SOX13 ENST00000367203.8_1_1:204082043-204086879:+|nuORF ENST00000367203.8_1_1:204082043-204086879:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 424.229625 846.444697 0.025016 1.0613E-05 0.062383 2.6465E-05 0.087399 3.7077E-05 424.22959365457626 17.22 0.45052 17.22 17.03 17.48 0 0.13902 -0.00027246 NaN 5.2307 29 12 4 NaN NaN NaN NaN 0 NaN NaN 0 10121000 8820 4522 5564 5568 0.015332191094330483 EAKDVKGT 8 Unmodified _EAKDVKGT_ 0 0 0 ENST00000367203.8_1_1:204082043-204086879:+|nuORF;SOX13|p.S324Qfs*23|1|0.18|ENSG00000143842|chr1:204122337-204122338|-/C|frameshift_variant;SOX13|p.T329Rfs*77|1|0.14|ENSG00000143842|chr1:204122356-204122356|C/-|frameshift_variant;SOX13|p.S324Afs*82|1|0.39|ENSG00000143842|chr1:204122338-204122338|C/-|frameshift_variant;SOX13|p.P337Rfs*69|2|0.13|ENSG00000143842|chr1:204122380-204122380|C/-|frameshift_variant;ENSG00000143842|ENST00000367204|SOX13 ENST00000367203.8_1_1:204082043-204086879:+|nuORF ENST00000367203.8_1_1:204082043-204086879:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 424.229625 846.444697 -0.41724 -0.000177 0.67679 0.00028712 0.25956 0.00011011 424.2298726174827 18.285 0.30493 17.013 16.864 17.169 -1.2722 -0.068521 0.00024884 NaN 5.2307 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 990160 8821 4522 5564 5568 0.015332191094330483 EAKDWDGEM 9 Unmodified _EAKDWDGEM_ 0 0 0 REV__nc|ENSG00000162923|Q9H7D7-2|WDR26 REV__nc|ENSG00000162923|Q9H7D7-2|WDR26 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2743530273438 2 540.718764 1079.42298 0.68504 0.00037041 0.57663 0.0003118 1.2617 0.00068221 541.2202331053614 78.392 0.73167 78.392 78.122 78.854 0 48 16 4 0 0 0 0.58804 1 15285 15285 13.906 0.39817 1 2676900 + 8822 17538 5565 5569 9014 9014 -0.11355953701468025 EAKDWDGEM 9 Unmodified _EAKDWDGEM_ 0 0 0 REV__nc|ENSG00000162923|Q9H7D7-2|WDR26 REV__nc|ENSG00000162923|Q9H7D7-2|WDR26 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.718764 1079.42298 0.68504 0.00037041 0.57663 0.0003118 1.2617 0.00068221 541.2202331053614 78.392 0.73167 78.392 78.122 78.854 0 -0.02955 -0.00080619 NaN 13.906 48 16 4 NaN NaN NaN NaN 0 NaN NaN 0 2676900 + 8823 17538 5565 5569 -0.11355953701468025 EAKEKDLQ 8 Unmodified _EAKEKDLQ_ 0 0 0 REV__CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant REV__CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25439453125 2 480.753464 959.492375 0.039811 1.9139E-05 -0.79747 -0.00038338 -0.75765 -0.00036424 480.75307765865807 26.882 1.0608 26.882 26.189 27.25 0 39 30 2 0 0 0 0.60622 1 4785 4785 21.747 0 1 690350 + 8824 13380 5566 5570 9015 9015 0.011008733096218748 EAKELAAEV 9 Unmodified _EAKELAAEV_ 0 0 0 CYC1|p.E254Rfs*3|1|0.5|ENSG00000179091|chr8:144096730-144096731|-/A|frameshift_variant;ENST00000533444.1_1_8:145150729-145152236:+|nuORF;ENSG00000179091|ENST00000318911|CYC1 CYC1|p.E254Rfs*3|1|0.5|ENSG00000179091|chr8:144096730-144096731|-/A|frameshift_variant CYC1|p.E254Rfs*3|1|0.5|ENSG00000179091|chr8:144096730-144096731|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2549743652344 2 480.25584 958.497126 0.13133 6.3073E-05 -3.6734 -0.0017642 -3.5421 -0.0017011 480.2557355966851 36.733 0.74999 34.385 34.073 34.823 -2.3479 60 21 4 0 0 0 0.5059 1 6483 6483 19.257 3.4098 1 2808700 8825 762 5567 5571 9016 9016 0.016217574523693656 EAKELFRS 8 Unmodified _EAKELFRS_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1;TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2645263671875 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 0.68128 1 11318 11318 16.942 0 1 39769000 8826 3971 5568 5572 9017 9017 0.023328834091330464 EAKERESI 8 Unmodified _EAKERESI_ 0 0 0 REV__DLC1|p.K446R|1|0.11|ENSG00000164741|chr8:13305280-13305280|T/C|missense_variant REV__DLC1|p.K446R|1|0.11|ENSG00000164741|chr8:13305280-13305280|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2520446777344 2 481.251089 960.487624 -0.25867 -0.00012448 0.69094 0.00033252 0.43227 0.00020803 481.2513701927699 57.753 0.51804 57.753 57.41 57.928 0 23 14 3 0 0 0 0.60622 1 10997 10997 21.747 0 1 1295000 + 8827 13687 5569 5573 9018 9018 0.005799891668516466 EAKERESI 8 Unmodified _EAKERESI_ 0 0 0 REV__DLC1|p.K446R|1|0.11|ENSG00000164741|chr8:13305280-13305280|T/C|missense_variant REV__DLC1|p.K446R|1|0.11|ENSG00000164741|chr8:13305280-13305280|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7655944824219 2 481.251089 960.487624 0.02893 1.3922E-05 0.76575 0.00036852 0.79468 0.00038244 481.2514135573215 60.355 0.68763 57.422 57.065 57.752 -2.9333 23 19 2 0 0 0 0.17924 1 11596 11596 47.749 11.622 1 1236900 + 8828 13687 5569 5573 9019 9019 0.005799891668516466 EAKERESI 8 Unmodified _EAKERESI_ 0 0 0 REV__DLC1|p.K446R|1|0.11|ENSG00000164741|chr8:13305280-13305280|T/C|missense_variant REV__DLC1|p.K446R|1|0.11|ENSG00000164741|chr8:13305280-13305280|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.251708984375 2 481.251089 960.487624 0.099727 4.7994E-05 0.5569 0.00026801 0.65663 0.000316 481.2511786195053 60.74 0.59968 57.516 57.134 57.734 -3.2237 24 16 2 0 0 0 0.31517 1 11396 11396 36.044 0 1 2254500 + 8829 13687 5569 5573 9020 9020 0.005799891668516466 EAKETQPI 8 Unmodified _EAKETQPI_ 0 0 0 ENSG00000165626|ENST00000466271|BEND7 ENSG00000165626|ENST00000466271|BEND7 ENSG00000165626|ENST00000466271|BEND7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22552490234375 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 43.807 1 43.807 43.307 44.307 0 0 0 0 0.23182 1 8206 8206 0.68139 0 1 8830 5643 5570 5574 9021 9021 0.010254882809135779 EAKFQLYPR 9 Unmodified _EAKFQLYPR_ 0 0 0 REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141 REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.33349609375 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 49.232 1 49.232 48.732 49.732 0 0 0 0 0.23508 1 9305 9305 7.2892 1.0834 1 + 8831 17577 5571 5575 9022 9022 0.04421120742927087 EAKGILYKKKM 11 Unmodified _EAKGILYKKKM_ 0 0 0 ENST00000489597.1_1_2:231042247-231042924:-|nuORF;nc|ENSG00000135899|Q9HB58-4|SP110;nc|ENSG00000135899|Q9HB58-2|SP110;nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110 ENST00000489597.1_1_2:231042247-231042924:-|nuORF ENST00000489597.1_1_2:231042247-231042924:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2273254394531 3 436.928453 1307.76353 NaN NaN NaN NaN NaN NaN NaN 42.988 1 40.337 39.837 40.837 -2.651 0 0 0 0.23698 1 7751 7751 2.6312 0.37851 1 8832 3960 5572 5576 9023 9023 0.12195724690354837 EAKGQFPP 8 Unmodified _EAKGQFPP_ 0 0 0 REV__ENST00000484465.1_1_21:42799714-42799849:+|nuORF REV__ENST00000484465.1_1_21:42799714-42799849:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2153625488281 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 30.491 1 28.417 27.917 28.917 -2.0743 0 0 0 0.21486 1 5223 5223 5.7604 0.52976 1 + 8833 22210 5573 5577 9024 9024 -0.0021045968238695423 EAKGSTKCVY 10 Unmodified _EAKGSTKCVY_ 0 0 0 REV__CASZ1|p.S1201F|1|0.07|ENSG00000130940|chr1:10646222-10646222|G/A|missense_variant REV__CASZ1|p.S1201F|1|0.07|ENSG00000130940|chr1:10646222-10646222|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.790771484375 2 543.268424 1084.5223 0.1092 5.9325E-05 -0.16283 -8.8462E-05 -0.053633 -2.9137E-05 543.7698708875364 78.193 0.21093 74.534 74.375 74.586 -3.6588 7 5 2 0 0 0 0.664 1 14885 14885 14.838 0.25658 1 527040 + 8834 13273 5574 5578 9025 9025 -0.01658511016717057 EAKGVEQL 8 Unmodified _EAKGVEQL_ 0 0 0 REV__ENSG00000183161|ENST00000327470|FANCF REV__ENSG00000183161|ENST00000327470|FANCF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23504638671875 2 437.23745 872.460347 0.16659 7.2838E-05 -0.62214 -0.00027202 -0.45555 -0.00019918 437.2372300912278 22.025 0.41928 22.025 21.77 22.189 0 14 11 2 0 0 0 0.72935 1 3694 3694 10.074 0.6908 1 451390 + 8835 18822 5575 5579 9026 9026 0.019015056264720442 EAKGVEQL 8 Unmodified _EAKGVEQL_ 0 0 0 REV__ENSG00000183161|ENST00000327470|FANCF REV__ENSG00000183161|ENST00000327470|FANCF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 437.23745 872.460347 0.16659 7.2838E-05 -0.62214 -0.00027202 -0.45555 -0.00019918 437.2372300912278 22.025 0.41928 22.025 21.77 22.189 0 -0.2455 -0.00060835 NaN 10.074 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 451390 + 8836 18822 5575 5579 0.019015056264720442 EAKGVEQL 8 Unmodified _EAKGVEQL_ 0 0 0 REV__ENSG00000183161|ENST00000327470|FANCF REV__ENSG00000183161|ENST00000327470|FANCF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 437.23745 872.460347 -0.48297 -0.00021117 0.25513 0.00011155 -0.22784 -9.962E-05 437.23742763832746 24.221 0.31553 22.368 22.155 22.471 -1.8534 0.097667 0.0001588 NaN 10.074 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 524940 + 8837 18822 5575 5579 0.019015056264720442 EAKHPWDVV 9 Unmodified _EAKHPWDVV_ 0 0 0 REV__nc|ENSG00000137449|Q7Z5Q1-7|CPEB2 REV__nc|ENSG00000137449|Q7Z5Q1-7|CPEB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2796020507812 2 540.777274 1079.53999 0.72633 0.00039278 0.55166 0.00029832 1.278 0.00069111 540.7771481640634 109.88 1.4389 105.7 104.87 106.31 -4.1826 95 40 3 0 0 0 0.13832 1 21060 21060 4.7159 0.2389 1 5333300 + 8838 13569 5576 5580 9027 9027 0.003405723004561878 EAKIEPSPES 10 Unmodified _EAKIEPSPES_ 0 0 0 REV__LIMCH1|p.E420Sfs*61|1|0.09|ENSG00000064042|chr4:41646277-41646277|A/-|frameshift_variant REV__LIMCH1|p.E420Sfs*61|1|0.09|ENSG00000064042|chr4:41646277-41646277|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7702026367188 2 543.769311 1085.52407 0.37083 0.00020165 3.884 0.002112 4.2548 0.0023136 543.7701546844492 73.622 0.17751 73.622 73.485 73.663 0 6 4 2 0 0 0 0.6817 1 14287 14287 13.042 1.4022 1 432770 + 8839 14162 5577 5581 9028 9028 -0.015271787271103676 EAKIEPSPES 10 Unmodified _EAKIEPSPES_ 0 0 0 REV__LIMCH1|p.E420Sfs*61|1|0.09|ENSG00000064042|chr4:41646277-41646277|A/-|frameshift_variant REV__LIMCH1|p.E420Sfs*61|1|0.09|ENSG00000064042|chr4:41646277-41646277|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.769311 1085.52407 0.37083 0.00020165 3.884 0.002112 4.2548 0.0023136 543.7701546844492 73.622 0.17751 73.622 73.485 73.663 0 0 0 NaN 13.042 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 432770 + 8840 14162 5577 5581 -0.015271787271103676 EAKIKKVDTKN 11 Unmodified _EAKIKKVDTKN_ 0 0 0 tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1 tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1 tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2530822753906 3 425.253993 1272.74015 NaN NaN NaN NaN NaN NaN NaN 25.08 1 23.227 22.727 23.727 -1.8534 0 0 0 0.23698 1 4105 4105 2.4348 0 1 8841 26004 5578 5582 9029 9029 0.11469002177409493 EAKKAAKQ 8 Unmodified _EAKKAAKQ_ 0 0 0 nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;EIF2A|p.I537Sfs*4|1|0.78|ENSG00000144895|chr3:150581723-150581723|A/-|frameshift_variant;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-2|EIF2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2188415527344 2 437.261259 872.507966 NaN NaN NaN NaN NaN NaN NaN 30.833 1 30.833 30.333 31.333 0 0 0 0 0.21486 1 5553 5553 5.2307 0.47466 1 8842 926 5579 5583 9030 9030 0.06661204617319072 EAKKAFLD 8 Unmodified _EAKKAFLD_ 0 0 0 ENST00000600274.5_1_19:42392153-42396275:+|nuORF;ARHGEF1|p.L344Wfs*12|2|0.31|ENSG00000076928|chr19:41896386-41896386|C/-|frameshift_variant;ARHGEF1|p.G859Afs*4|1|0.32|ENSG00000076928|chr19:41906537-41906537|G/-|frameshift_variant;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1 ENST00000600274.5_1_19:42392153-42396275:+|nuORF ENST00000600274.5_1_19:42392153-42396275:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5261535644531 2 461.255643 920.496732 -0.046825 -2.1598E-05 0.22244 0.0001026 0.17562 8.1005E-05 461.25572560970807 61.377 0.80424 58.416 58.205 59.009 -2.9614 36 22 2 0 0 0 0.71273 1 11820 11820 12.532 0.89125 1 1880200 8843 11701 5580 5584 9031 9031 0.033303825231769224 EAKKEISD 8 Unmodified _EAKKEISD_ 0 0 0 REV__tr|U7T261|U7T261_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00482PE=3SV=1 REV__tr|U7T261|U7T261_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00482PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2369079589844 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 41.879 1 39.228 38.728 39.728 -2.651 0 0 0 0.23025 1 7528 7528 0.063987 0 1 + 8844 25310 5581 5585 9032 9032 0.0033318441828669165 EAKKKGGAQQ 10 Unmodified _EAKKKGGAQQ_ 0 0 0 REV__ENSG00000153187|ENST00000640218|HNRNPU REV__ENSG00000153187|ENST00000640218|HNRNPU MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2798461914062 2 522.793455 1043.57236 -0.427 -0.00022324 0.27392 0.0001432 -0.15309 -8.0034E-05 522.7935192917753 17.452 0.13785 16.141 16.066 16.204 -1.3109 5 3 2 0 0 0 0.91049 1 2786 2786 8.7454 0 1 246620 + 8845 17139 5582 5586 9033 9033 0.05231359703475391 EAKKKKKKKK 10 Unmodified _EAKKKKKKKK_ 0 0 0 REV__SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant REV__SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7576904296875 2 622.432264 1242.84998 NaN NaN NaN NaN NaN NaN NaN 105.65 1 101.38 100.88 101.88 -4.2638 0 0 0 0.22588 1 20792 20792 1.6526 1.2519 1 + 8846 15895 5583 5587 9034 9034 0.2382647230724615 EAKKLLFKK 9 Unmodified _EAKKLLFKK_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 368.855224609375 3 368.909498 1103.70667 -0.18261 -6.7365E-05 -0.44617 -0.0001646 -0.62877 -0.00023196 368.9091436120294 35.355 0.35091 35.355 35.203 35.554 0 15 9 2 0 0 0 0.65126 1 6497 6497 0.0033805 0 1 721000 + 8847 14574 5584 5588 9035 9035 0.15896045196154773 EAKLDLKY 8 Unmodified _EAKLDLKY_ 0 0 0 ENSG00000132938|ENST00000612955|MTUS2 ENSG00000132938|ENST00000612955|MTUS2 ENSG00000132938|ENST00000612955|MTUS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2761535644531 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 103.98 1 103.98 103.48 104.48 0 0 0 0 0.20896 1 20439 20439 18.135 2.2878 1 8848 3772 5585 5589 9036 9036 0.04846938211710494 EAKLKLIF 8 Unmodified _EAKLKLIF_ 0 0 0 REV__CEP152|p.Q965Lfs*16|1|0.02|ENSG00000103995|chr15:48756354-48756355|-/ACAAACTTGTCTA|frameshift_variant REV__CEP152|p.Q965Lfs*16|1|0.02|ENSG00000103995|chr15:48756354-48756355|-/ACAAACTTGTCTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7654113769531 2 481.307678 960.600803 NaN NaN NaN NaN NaN NaN NaN 55.412 1 52.277 51.777 52.777 -3.1352 0 0 0 0.21486 1 10240 10240 5.7604 0 1 + 8849 13375 5586 5590 9037 9037 0.1189270935070681 EAKLLLLY 8 Unmodified _EAKLLLLY_ 0 0 0 REV__ENST00000517521.5_1_8:30240060-30242719:-|nuORF REV__ENST00000517521.5_1_8:30240060-30242719:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7830810546875 2 481.799686 961.584819 0.23814 0.00011474 0.21341 0.00010282 0.45155 0.00021755 481.7996669367269 64.53 0.46017 61.072 60.837 61.297 -3.4581 20 12 2 0 0 0 8448 1 12029 12029 0.12286 0.049601 1 977940 + 8850 22600 5587 5591 9038 9038 0.10249003113790423 EAKLPRQASS 10 Unmodified _EAKLPRQASS_ 0 0 0 nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD;ENST00000490764.5_1_2:234327938-234366271:+|nuORF;DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant nc|ENSG00000077044|Q16760-2|DGKD nc|ENSG00000077044|Q16760-2|DGKD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7861938476562 2 543.798737 1085.58292 NaN NaN NaN NaN NaN NaN NaN 72.156 1 72.156 71.656 72.656 0 0 0 0 0.22583 1 13984 13984 13.906 2.2658 1 8851 1549 5588 5592 9039 9039 0.043553423578941874 EAKLQVHYV 9 Unmodified _EAKLQVHYV_ 0 0 0 REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2 REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79248046875 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 77.781 1 74.122 73.622 74.622 -3.6588 0 0 0 0.23508 1 14814 14814 11.64 4.3511 1 + 8852 14869 5589 5593 9040 9040 0.04757431851612637 EAKMAVLSA 9 Unmodified _EAKMAVLSA_ 0 0 0 ENST00000436115.6_1_19:1383907-1389591:+|nuORF;ENST00000545446.5_1_19:1383907-1388593:+|nuORF;ENST00000538662.5_1_19:1383907-1391085:+|nuORF ENST00000436115.6_1_19:1383907-1389591:+|nuORF;ENST00000538662.5_1_19:1383907-1391085:+|nuORF ENST00000538662.5_1_19:1383907-1391085:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.248779296875 2 460.249503 918.484453 NaN NaN NaN NaN NaN NaN NaN 43.416 1 40.702 40.202 41.202 -2.7134 0 0 0 0.23508 1 7836 7836 9.3831 0.035688 1 8853 9835;11051 5590 5594 9041 9041 0.02195022788487222 EAKNPDIKE 9 Unmodified _EAKNPDIKE_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2781982421875 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 74.791 1 71.426 70.926 71.926 -3.3643 0 0 0 0.23508 1 14594 14594 10.074 0.72649 1 8854 7385 5591 5595 9042 9042 0.009925448553758542 EAKPEPPPP 9 Unmodified _EAKPEPPPP_ 0 0 0 REV__GAPDHS|p.Y327Lfs*26|1|0.12|ENSG00000105679|chr19:35543744-35543745|-/C|frameshift_variant REV__GAPDHS|p.Y327Lfs*26|1|0.12|ENSG00000105679|chr19:35543744-35543745|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2315979003906 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 28.546 1 26.59 26.09 27.09 -1.9561 0 0 0 0.22251 1 5110 5110 16.942 1.0951 1 + 8855 15010 5592 5596 9043 9043 0.009820786605587273 EAKPEPPPP 9 Unmodified _EAKPEPPPP_ 0 0 0 REV__GAPDHS|p.Y327Lfs*26|1|0.12|ENSG00000105679|chr19:35543744-35543745|-/C|frameshift_variant REV__GAPDHS|p.Y327Lfs*26|1|0.12|ENSG00000105679|chr19:35543744-35543745|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2546691894531 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 55.414 1 52.531 52.031 53.031 -2.8837 0 0 0 0.23508 1 10604 10604 8.5933 0.68312 1 + 8856 15010 5592 5596 9044 9044 0.009820786605587273 EAKPEPPPP 9 Unmodified _EAKPEPPPP_ 0 0 0 REV__GAPDHS|p.Y327Lfs*26|1|0.12|ENSG00000105679|chr19:35543744-35543745|-/C|frameshift_variant REV__GAPDHS|p.Y327Lfs*26|1|0.12|ENSG00000105679|chr19:35543744-35543745|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24237060546875 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 78.231 1 74.464 73.964 74.964 -3.7664 0 0 0 0.23508 1 14832 14832 11.64 0.81637 1 + 8857 15010 5592 5596 9045 9045 0.009820786605587273 EAKPEPPPP 9 Unmodified _EAKPEPPPP_ 0 0 0 REV__GAPDHS|p.Y327Lfs*26|1|0.12|ENSG00000105679|chr19:35543744-35543745|-/C|frameshift_variant REV__GAPDHS|p.Y327Lfs*26|1|0.12|ENSG00000105679|chr19:35543744-35543745|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25482177734375 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 55.878 1 52.702 52.202 53.202 -3.1761 0 0 0 0.21848 1 10384 10384 18.135 2.2878 1 + 8858 15010 5592 5596 9046 9046 0.009820786605587273 EAKPRILLYT 10 Unmodified _EAKPRILLYT_ 0 0 0 tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.29296875 2 602.358431 1202.70231 NaN NaN NaN NaN NaN NaN NaN 63.839 1 60.583 60.083 61.083 -3.2567 0 0 0 0.22588 1 11978 11978 3.2813 0 1 8859 25958 5593 5597 9047 9047 0.1090653598262179 EAKPYKNQ 8 Unmodified _EAKPYKNQ_ 0 0 0 REV__ENSG00000198108|ENST00000305031|CHSY3 REV__ENSG00000198108|ENST00000305031|CHSY3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2580871582031 2 489.256174 976.497795 -0.1182 -5.7829E-05 -0.85351 -0.00041758 -0.9717 -0.00047541 489.2557383575465 60.458 0.59307 60.458 60.174 60.767 0 36 16 3 0 0 0 0.68128 1 11597 11597 16.942 1.0951 1 4325300 + 8860 19391 5594 5598 9048 9048 0.008605968920846863 EAKQFDESL 9 Unmodified _EAKQFDESL_ 0 0 0 REV__nc|ENSG00000020129|Q9UBB6-2|NCDN REV__nc|ENSG00000020129|Q9UBB6-2|NCDN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.268798828125 2 533.756204 1065.49785 0.13795 7.3631E-05 -1.1467 -0.00061205 -1.0087 -0.00053842 533.7556548695694 62.046 0.49331 59.084 58.864 59.357 -2.9614 21 13 2 0 0 0 0.74655 1 11980 11980 10.824 6.4947 1 963450 + 8861 13979 5595 5599 9049 9049 -0.03227447898552782 EAKQGGQFDP 10 Unmodified _EAKQGGQFDP_ 0 0 0 REV__ENST00000521766.5_1_14:102695625-102698074:-|nuORF REV__ENST00000521766.5_1_14:102695625-102698074:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2582397460938 2 538.753995 1075.49344 0.43996 0.00023703 0.14099 7.5957E-05 0.58095 0.00031299 538.7543073002429 28.498 1.9582 26.743 26.175 28.133 -1.7552 144 48 6 0 0 0 0.68961 2 4781 4781;4806 12.241 1.4167 1 33451000 + 8862 22654 5596 5600 9050;9051 9050 -0.04128912321448297 EAKQISTGQ 9 Unmodified _EAKQISTGQ_ 0 0 0 REV__ENST00000289175.10_2_2:238672670-238672859:+|nuORF REV__ENST00000289175.10_2_2:238672670-238672859:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24859619140625 2 481.251089 960.487624 0.08258 3.9742E-05 -0.81517 -0.0003923 -0.73259 -0.00035256 481.2505084892255 37.909 2.4506 37.909 36.887 39.338 0 134 69 4 0 0 0 0.48181 1 7246 7246 0.20686 0 1 99259000 + 8863 20346 5597 5601 9052 9052 0.005799891668630153 EAKQKENN 8 Unmodified _EAKQKENN_ 0 0 0 REV__ENSG00000153684|ENST00000526619|GOLGA8F;REV__ENSG00000215252|ENST00000683415|GOLGA8B REV__ENSG00000153684|ENST00000526619|GOLGA8F MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2408752441406 2 480.740888 959.467223 -0.0017104 -8.2228E-07 0.031816 1.5295E-05 0.030106 1.4473E-05 480.74086870872117 22.753 1.3972 22.753 22.466 23.863 0 78 39 4 0 0 0 0.68128 1 3955 3955 16.942 3.0362 1 51491000 + 8864 17152;18466 5598 5602 9053 9053 -0.01413181492955573 EAKQTSGPP 9 Unmodified _EAKQTSGPP_ 0 0 0 REV__nc|ENSG00000115085|P43403-2|ZAP70 REV__nc|ENSG00000115085|P43403-2|ZAP70 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2337341308594 2 457.732532 913.45051 0.28548 0.00013067 0.088276 4.0407E-05 0.37376 0.00017108 457.73257731483307 31.842 0.48065 31.842 31.566 32.047 0 20 13 2 0 0 0 0.5059 1 5762 5762 19.257 1.1106 1 900640 + 8865 15402 5599 5603 9054 9054 -0.009676823789050104 EAKRAESERCQ 11 Unmodified _EAKRAESERCQ_ 0 0 0 REV__ENST00000500741.2_1_12:120929021-120929129:-|nuORF REV__ENST00000500741.2_1_12:120929021-120929129:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.214599609375 3 436.210459 1305.60955 -0.12537 -5.4688E-05 0.51576 0.00022498 0.39039 0.00017029 436.21061766329655 69.155 0.87933 69.155 68.718 69.598 0 83 24 4 0 0 0 0.77537 1 13439 13439 6.6235 0.75532 1 24672000 + 8866 22426 5600 5604 9055 9055 -0.031033368130692907 EAKRIAEM 8 Unmodified _EAKRIAEM_ 0 0 0 ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-4|SLC8A3;nc|ENSG00000100678|P57103-5|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1599426269531 3 316.504143 946.490601 -0.0802 -2.5383E-05 -0.24268 -7.681E-05 -0.32288 -0.00010219 316.50402811898874 22.934 0.31605 21.48 21.296 21.612 -1.4535 18 8 3 0 0 0 1.0265 1 3670 3670 1.6526 0 1 1086400 8867 2006 5601 5605 9056 9056 0.015215410200084989 EAKRIAEM 8 Unmodified _EAKRIAEM_ 0 0 0 ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-4|SLC8A3;nc|ENSG00000100678|P57103-5|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 316.504143 946.490601 0.47058 0.00014894 -0.83071 -0.00026292 -0.36013 -0.00011398 316.50380918858093 23.055 0.28106 21.502 21.372 21.653 -1.5532 -0.018827 -0.00048614 NaN 1.6526 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 960010 8868 2006 5601 5605 0.015215410200084989 EAKRVESH 8 Unmodified _EAKRVESH_ 0 0 0 ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.1130676269531 3 319.170041 954.488293 NaN NaN NaN NaN NaN NaN NaN 24.914 1 23.38 22.88 23.88 -1.5342 0 0 0 0.21486 1 4074 4074 1.8442 0 1 8869 11077 5602 5606 9057 9057 0.009228286065649627 EAKSKKEAA 9 Unmodified _EAKSKKEAA_ 0 0 0 REV__ENSG00000155827|ENST00000389120|RNF20 REV__ENSG00000155827|ENST00000389120|RNF20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2424011230469 2 481.269281 960.52401 NaN NaN NaN NaN NaN NaN NaN 31.263 1 31.263 30.763 31.763 0 0 0 0 0.23508 1 5640 5640 18.146 3.3081 1 + 8870 17227 5603 5607 9058 9058 0.042168660635638844 EAKSKLAIE 9 Unmodified _EAKSKLAIE_ 0 0 0 REV__ENSG00000139648|ENST00000267119|KRT71 REV__ENSG00000139648|ENST00000267119|KRT71 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 329.99676513671875 3 330.193963 987.560061 0.24505 8.0913E-05 -0.61893 -0.00020437 -0.37388 -0.00012345 330.19372602780237 32.937 0.41447 30.79 30.522 30.937 -2.1468 13 11 2 0 0 0 0.8799 1 5675 5675 0.20686 0 1 488690 + + 8871 13545 5604 5608 9059 9059 0.065783232404101 EAKSKSLAE 9 Unmodified _EAKSKSLAE_ 0 0 0 REV__ENST00000420252.1_1_7:12511002-12511287:+|nuORF REV__ENST00000420252.1_1_7:12511002-12511287:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7862548828125 2 481.761289 961.508025 0.37614 0.00018121 -1.0374 -0.00049978 -0.66127 -0.00031857 481.76127137261483 90.796 0.48637 86.735 86.393 86.879 -4.0609 22 13 3 0 0 0 0.46882 1 17259 17259 21.537 3.3906 1 886840 + 8872 16457 5605 5609 9060 9060 0.025731598266588662 EAKSRHDSI 9 Unmodified _EAKSRHDSI_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2823486328125 2 521.767437 1041.52032 -0.9532 -0.00049735 -2.4959 -0.0013023 -3.4491 -0.0017996 521.7662433545268 20.632 0.51734 19.248 19.096 19.614 -1.3847 21 14 2 0 0 0 0.69259 1 3262 3262 6.7232 0 1 305410 8873 7597 5606 5610 9061 9061 0.0012219628970342455 EAKSTKLP 8 Unmodified _EAKSTKLP_ 0 0 0 REV__nc|ENSG00000105486|P18858-2|LIG1 REV__nc|ENSG00000105486|P18858-2|LIG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2276306152344 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 30.414 1 28.339 27.839 28.839 -2.0743 0 0 0 0.21486 1 5207 5207 4.756 0 1 + 8874 14994 5607 5611 9062 9062 0.055383825231729134 EAKSVKRY 8 Unmodified _EAKSVKRY_ 0 0 0 REV__ENST00000527125.1_1_11:123504853-123509099:-|nuORF REV__ENST00000527125.1_1_11:123504853-123509099:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2212219238281 2 490.779816 979.545079 -0.0050071 -2.4574E-06 0.23266 0.00011419 0.22766 0.00011173 490.77987092773566 34.079 0.79861 31.761 31.461 32.26 -2.3175 39 22 2 0 0 0 0.89147 1 6237 6237 0.62683 0 1 750790 + 8875 17833 5608 5612 9063 9063 0.054488761630864246 EAKSVLIA 8 Unmodified _EAKSVLIA_ 0 0 0 REV__nc|ENSG00000198010|Q9P1A6-3|DLGAP2 REV__nc|ENSG00000198010|Q9P1A6-3|DLGAP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 416.26434326171875 2 415.752736 829.490919 -0.05301 -2.2039E-05 2.7818 0.0011565 2.7288 0.0011345 415.75274758546357 66.37 1.1801 63.044 62.362 63.542 -3.3268 46 33 2 0 0 0 1.0191 1 12418 12418 8.5933 4.264 1 1114700 + 8876 19384 5609 5613 9064 9064 0.06935284011512977 EAKTLSTLSH 10 Unmodified _EAKTLSTLSH_ 0 0 0 REV__tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1 REV__tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7937622070312 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 18.027 1 16.716 16.216 17.216 -1.3109 0 0 0 0.22588 1 2916 2916 6.7232 0.51738 1 + 8877 25375 5610 5614 9065 9065 0.032325202637593975 EAKTLSTLSH 10 Unmodified _EAKTLSTLSH_ 0 0 0 REV__tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1 REV__tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7903442382812 2 543.793121 1085.57169 0.61724 0.00033565 -0.57235 -0.00031124 0.044893 2.4413E-05 543.7927764636723 120.12 0.84935 115.47 114.99 115.84 -4.645 58 23 3 0 0 0 0.4551 1 22979 22979 0.26539 0.26539 1 13455000 + 8878 25375 5610 5614 9066 9066 0.032325202637593975 EAKVKFEERY 10 Unmodified _EAKVKFEERY_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 433.8968200683594 3 433.562827 1297.66665 -0.090665 -3.9309E-05 0.029154 1.264E-05 -0.061512 -2.6669E-05 433.5627967307498 42.733 0.45105 40.082 39.744 40.195 -2.651 20 12 2 0 0 0 0.76216 2 7657 7657;7673 1.9064 0 1 1048600 8879 3678 5611 5615 9067;9068 9067 0.02972453734969349 EAKVKFEERY 10 Unmodified _EAKVKFEERY_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 433.562827 1297.66665 -0.26028 -0.00011285 0.1012 4.3874E-05 -0.15909 -6.8974E-05 433.5628928951531 42.688 0.53532 39.969 39.768 40.303 -2.7191 -0.043425 -6.1916E-05 NaN 1.9064 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1788300 8880 3678 5611 5615 0.02972453734969349 EAKVKFEERY 10 Unmodified _EAKVKFEERY_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 433.562827 1297.66665 -0.20625 -8.9421E-05 0.31994 0.00013871 0.11369 4.9293E-05 433.8972498377192 42.592 0.49594 39.986 39.75 40.246 -2.606 -0.026113 0.0002226 NaN 1.9064 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1231500 8881 3678 5611 5615 0.02972453734969349 EAKVLQKKRE 10 Unmodified _EAKVLQKKRE_ 0 0 0 REV__CAMSAP3|p.V883Gfs*10|1|0.45|ENSG00000076826|chr19:7613137-7613138|-/G|frameshift_variant REV__CAMSAP3|p.V883Gfs*10|1|0.45|ENSG00000076826|chr19:7613137-7613138|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 410.11004638671875 3 410.250583 1227.72992 -0.38713 -0.00015882 0.43082 0.00017674 0.043689 1.7923E-05 410.2506359051316 18.621 0.24656 17.296 17.151 17.398 -1.3251 10 6 2 0 0 0 0.91149 1 2778 2778 0.62683 0.21856 1 511880 + 8882 13247 5612 5616 9069 9069 0.1251643924281325 EAKVPGQTQ 9 Unmodified _EAKVPGQTQ_ 0 0 0 REV__nc|ENSG00000130518|Q9H0B3-5|IQCN REV__nc|ENSG00000130518|Q9H0B3-5|IQCN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73101806640625 2 479.253631 956.49271 -0.37021 -0.00017743 0.74524 0.00035716 0.37503 0.00017974 479.25411509496985 62.87 0.43033 62.87 62.622 63.053 0 15 11 2 0 0 0 0.80521 1 12076 12076 1.4819 0.15237 1 934380 + 8883 16011 5613 5617 9070 9070 0.012722930294785328 EAKVPPAP 8 Unmodified _EAKVPPAP_ 0 0 0 REV__nc|ENSG00000170011|Q8NFW9-2|MYRIP REV__nc|ENSG00000170011|Q8NFW9-2|MYRIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.2998046875 2 404.731803 807.449054 -0.12772 -5.1692E-05 0.019298 7.8106E-06 -0.10842 -4.3882E-05 404.7317743224022 22.372 1.5758 20.919 20.349 21.925 -1.4535 74 44 2 0 0 0 1.0095 1 3468 3468 5.7604 0 1 673380 + 8884 18136 5614 5618 9071 9071 0.03762728322988096 EAKVQLKGI 9 Unmodified _EAKVQLKGI_ 0 0 0 ENSG00000175946|ENST00000684634|KLHL38;KLHL38|p.E96Rfs*12|1|0.08|ENSG00000175946|chr8:123652641-123652641|C/-|frameshift_variant;KLHL38|p.A159Gfs*29|1|0.08|ENSG00000175946|chr8:123652451-123652452|-/C|frameshift_variant;KLHL38|p.G339Afs*20|1|0.39|ENSG00000175946|chr8:123651911-123651911|C/-|frameshift_variant ENSG00000175946|ENST00000684634|KLHL38 ENSG00000175946|ENST00000684634|KLHL38 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 328.9947509765625 3 329.206203 984.596781 -0.03158 -1.0396E-05 0.25893 8.5242E-05 0.22735 7.4846E-05 329.20633446052125 107.37 0.96598 102.96 102.44 103.4 -4.4121 47 27 3 0 0 0 0.88054 1 20623 20623 2.2828 0 1 3647500 8885 6441 5615 5619 9072 9072 0.10386619857001733 EAKVQLKGI 9 Unmodified _EAKVQLKGI_ 0 0 0 ENSG00000175946|ENST00000684634|KLHL38;KLHL38|p.E96Rfs*12|1|0.08|ENSG00000175946|chr8:123652641-123652641|C/-|frameshift_variant;KLHL38|p.A159Gfs*29|1|0.08|ENSG00000175946|chr8:123652451-123652452|-/C|frameshift_variant;KLHL38|p.G339Afs*20|1|0.39|ENSG00000175946|chr8:123651911-123651911|C/-|frameshift_variant ENSG00000175946|ENST00000684634|KLHL38 ENSG00000175946|ENST00000684634|KLHL38 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 329.206203 984.596781 -0.70133 -0.00023088 1.061 0.0003493 0.35971 0.00011842 329.20656477039034 107.12 0.94186 102.8 102.51 103.45 -4.32 -0.11217 0.00053552 NaN 2.2828 41 26 2 NaN NaN NaN NaN 0 NaN NaN 0 3135200 8886 6441 5615 5619 0.10386619857001733 EAKVQLKGI 9 Unmodified _EAKVQLKGI_ 0 0 0 ENSG00000175946|ENST00000684634|KLHL38;KLHL38|p.E96Rfs*12|1|0.08|ENSG00000175946|chr8:123652641-123652641|C/-|frameshift_variant;KLHL38|p.A159Gfs*29|1|0.08|ENSG00000175946|chr8:123652451-123652452|-/C|frameshift_variant;KLHL38|p.G339Afs*20|1|0.39|ENSG00000175946|chr8:123651911-123651911|C/-|frameshift_variant ENSG00000175946|ENST00000684634|KLHL38 ENSG00000175946|ENST00000684634|KLHL38 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 329.206203 984.596781 0.021348 7.028E-06 0.10896 3.587E-05 0.13031 4.2898E-05 329.20629326939695 107.12 1.1322 102.99 102.46 103.59 -4.135 0.073316 -0.00040477 NaN 2.2828 57 32 3 NaN NaN NaN NaN 0 NaN NaN 0 3372700 8887 6441 5615 5619 0.10386619857001733 EAKVVTVLY 9 Unmodified _EAKVVTVLY_ 0 0 0 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.5225830078125 3 341.202459 1020.58555 0.24304 8.2926E-05 -0.44737 -0.00015264 -0.20432 -6.9716E-05 341.20219328491527 65.657 0.83948 62.199 61.926 62.765 -3.4581 62 23 4 0 0 0 0.6171 1 12244 12244 0.0033805 0 1 11016000 + 8888 17744 5616 5620 9073 9073 0.07607797762841528 EAKYKNKSQ 9 Unmodified _EAKYKNKSQ_ 0 0 0 REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.779052734375 2 548.293288 1094.57202 0.054912 3.0108E-05 1.5387 0.00084366 1.5936 0.00087377 548.2957709512333 72.161 0.71086 68.85 68.494 69.205 -3.3107 28 19 3 0 0 0 0.82765 1 14095 14095 13.906 0 1 1839500 + 8889 16441 5617 5621 9074 9074 0.028519399836113735 EALAAQLSA 9 Unmodified _EALAAQLSA_ 0 0 0 REV__nc|ENSG00000128573|O15409-2|FOXP2 REV__nc|ENSG00000128573|O15409-2|FOXP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21636962890625 2 437.23745 872.460347 0.52873 0.00023118 -1.3532 -0.00059166 -0.82443 -0.00036047 437.23694120197274 78.07 0.45827 78.07 77.876 78.334 0 15 12 2 0 0 0 0.52396 1 15217 15217 18.146 0 1 862280 + 8890 15925 5618 5622 9075 9075 0.019015056264606756 EALAAQLSA 9 Unmodified _EALAAQLSA_ 0 0 0 REV__nc|ENSG00000128573|O15409-2|FOXP2 REV__nc|ENSG00000128573|O15409-2|FOXP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2161560058594 2 437.23745 872.460347 -0.12147 -5.311E-05 -0.30802 -0.00013468 -0.42949 -0.00018779 437.2373329036224 81.468 0.58118 77.911 77.655 78.236 -3.557 27 16 2 0 0 0 0.31714 1 15915 15915 30.637 3.7529 1 947440 + 8891 15925 5618 5622 9076 9076 0.019015056264606756 EALAENNL 8 Unmodified _EALAENNL_ 0 0 0 ENSG00000136244|ENST00000258743|IL6 ENSG00000136244|ENST00000258743|IL6 ENSG00000136244|ENST00000258743|IL6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21942138671875 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 79.03 1 75.225 74.725 75.725 -3.8048 0 0 0 0.23025 1 14992 14992 1.7423 1.6194 1 8892 3996 5619 5623 9077 9077 -0.017353712702515622 EALAESVAQ 9 Unmodified _EALAESVAQ_ 0 0 0 ENSG00000184389|ENST00000442999|A3GALT2 ENSG00000184389|ENST00000442999|A3GALT2 ENSG00000184389|ENST00000442999|A3GALT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2355041503906 2 459.232364 916.450176 0.37663 0.00017296 -0.13654 -6.2705E-05 0.24009 0.00011026 459.232250680748 51.173 1.4342 51.173 50.536 51.97 0 118 40 5 0 0 0 0.38188 1 9750 9750 26.884 0 1 109770000 8893 6908 5620 5624 9078 9078 -0.011391020987616685 EALAESVAQ 9 Unmodified _EALAESVAQ_ 0 0 0 ENSG00000184389|ENST00000442999|A3GALT2 ENSG00000184389|ENST00000442999|A3GALT2 ENSG00000184389|ENST00000442999|A3GALT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.236083984375 2 459.232364 916.450176 0.0074256 3.4101E-06 0.35222 0.00016175 0.35965 0.00016516 459.23246623088926 54.093 1.3975 50.958 50.49 51.887 -3.1352 115 39 5 0 0 0 0.2219 1 9924 9924 36.127 3.8215 1 146050000 8894 6908 5620 5624 9079 9079 -0.011391020987616685 EALAGLPALR 10 Unmodified _EALAGLPALR_ 0 0 0 nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL nc|ENSG00000100399|Q6NUI6-2|CHADL nc|ENSG00000100399|Q6NUI6-2|CHADL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0504455566406 3 337.537953 1009.59203 -0.2869 -9.684E-05 0.35695 0.00012048 0.070046 2.3643E-05 337.53804319338855 34.19 2.2295 31.974 30.07 32.299 -2.2158 86 63 2 0 0 0 0.91149 1 5990 5990 0.62683 0 1 1253700 8895 1970 5621 5625 9080 9080 0.08761735714210772 EALAPKGSKY 10 Unmodified _EALAPKGSKY_ 0 0 0 REV__nc|ENSG00000134779|Q68CL5-3|TPGS2 REV__nc|ENSG00000134779|Q68CL5-3|TPGS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2626953125 2 532.292756 1062.57096 0.56003 0.0002981 -0.64321 -0.00034237 -0.083176 -4.4274E-05 532.2924031074564 115.63 0.81008 111.31 110.86 111.67 -4.3243 44 22 3 0 0 0 0.5575 1 22231 22231 21.537 2.28 1 3189100 + 8896 16228 5622 5626 9081 9081 0.04217725614716983 EALAPQCWAY 10 Unmodified _EALAPQCWAY_ 0 0 0 ENST00000291232.4_2_22:42319190-42319607:-|nuORF ENST00000291232.4_2_22:42319190-42319607:-|nuORF ENST00000291232.4_2_22:42319190-42319607:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3333740234375 2 576.263142 1150.51173 NaN NaN NaN NaN NaN NaN NaN 68.905 1 65.369 64.869 65.869 -3.5362 0 0 0 0.22588 1 12963 12963 6.7232 0.51738 1 8897 8477 5623 5627 9082 9082 -0.057504936711211485 EALARFARAF 10 Unmodified _EALARFARAF_ 0 0 0 SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1;ENST00000530213.5_1_11:64809351-64812196:+|nuORF SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3125610351562 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 68.803 1 65.413 64.913 65.913 -3.3903 0 0 0 0.22588 1 12999 12999 6.7232 1.9672 1 8898 5875 5624 5628 9083 9083 0.055439428370846144 EALARFARAF 10 Unmodified _EALARFARAF_ 0 0 0 SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1;ENST00000530213.5_1_11:64809351-64812196:+|nuORF SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3219604492188 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 72.669 1 69.13 68.63 69.63 -3.5385 0 0 0 0.22588 1 13778 13778 10.074 2.7847 1 8899 5875 5624 5628 9084 9084 0.055439428370846144 EALARLDK 8 Unmodified _EALARLDK_ 0 0 0 nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2210693359375 2 458.266542 914.51853 -0.038603 -1.7691E-05 0.23682 0.00010853 0.19821 9.0835E-05 458.2666025629076 58.476 0.68613 58.476 58.105 58.792 0 54 19 4 0 0 0 0.17924 1 11245 11245 47.749 0.1543 1 18054000 8900 3188 5625 5629 9085 9085 0.05785187271749237 EALARLDK 8 Unmodified _EALARLDK_ 0 0 0 nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2393798828125 2 458.266542 914.51853 0.059035 2.7054E-05 0.18057 8.2748E-05 0.2396 0.0001098 458.26655015763197 61.699 0.5301 58.33 58.002 58.532 -3.3694 41 14 3 0 0 0 0.14695 1 11503 11503 53.833 0.42879 1 7324900 8901 3188 5625 5629 9086 9086 0.05785187271749237 EALATAWSL 9 Unmodified _EALATAWSL_ 0 0 0 REV__nc|ENSG00000182253|O15061-2|SYNM REV__nc|ENSG00000182253|O15061-2|SYNM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2538146972656 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 84.651 1 80.741 80.241 81.241 -3.9093 0 0 0 0.22962 1 16092 16092 14.838 0.93222 1 + 8902 18769 5626 5630 9087 9087 0.00982078660570096 EALCRECP 8 Unmodified _EALCRECP_ 0 0 0 ENSG00000258429|ENST00000288022|PDF ENSG00000258429|ENST00000288022|PDF ENSG00000258429|ENST00000288022|PDF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24017333984375 2 460.701863 919.389172 NaN NaN NaN NaN NaN NaN NaN 55.571 1 52.381 51.881 52.881 -3.1895 0 0 0 0.20761 1 10276 10276 19.257 1.122 1 8903 7951 5627 5631 9088 9088 -0.07374653674196452 EALDELASL 9 Unmodified _EALDELASL_ 0 0 0 ENSG00000164985|ENST00000380733|PSIP1 ENSG00000164985|ENST00000380733|PSIP1 ENSG00000164985|ENST00000380733|PSIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2531433105469 2 480.747847 959.481142 0.39314 0.000189 -0.21683 -0.00010424 0.17631 8.476E-05 480.7476854761429 124.72 1.8222 119.96 119.25 121.07 -4.7681 137 51 5 0 0 0 0.12183 1 24099 24099 48.346 0 1 87697000 8904 5585 5628 5632 9089 9089 -0.00021948784524283838 EALDELEKEKG 11 Unmodified _EALDELEKEKG_ 0 0 0 tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1 tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1 tr|U7T190|U7T190_FUSNUTranscriptiontermination/antiterminationproteinNusAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.773681640625 2 630.819532 1259.62451 NaN NaN NaN NaN NaN NaN NaN 134.15 1 129.51 129.01 130.01 -4.6399 0 0 0 0.17845 1 26450 26450 23.79 4.4278 1 8905 26321 5629 5633 9090 9090 0.005084335359015313 EALDGYFMAY 10 Unmodified _EALDGYFMAY_ 0 0 0 REV__nc|ENSG00000184887|Q96KE9-2|BTBD6 REV__nc|ENSG00000184887|Q96KE9-2|BTBD6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.253173828125 2 590.254982 1178.49541 NaN NaN NaN NaN NaN NaN NaN 39.793 1 37.253 36.753 37.753 -2.5398 0 0 0 0.22588 1 7113 7113 7.2892 1.0834 1 + 8906 18920 5630 5634 9091 9091 -0.0866961962788082 EALDIQKY 8 Unmodified _EALDIQKY_ 0 0 0 tr|U7T554|U7T554_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00315PE=3SV=1 tr|U7T554|U7T554_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00315PE=3SV=1 tr|U7T554|U7T554_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00315PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25860595703125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 26.03 1 24.382 23.882 24.882 -1.6482 0 0 0 0.17841 1 4580 4580 32.305 0 1 8907 26450 5631 5635 9092 9092 0.012100613149868877 EALEEGGPP 9 Unmodified _EALEEGGPP_ 0 0 0 nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS;ENST00000488506.5_1_9:130570554-130575491:+|nuORF;ENST00000467826.5_1_9:130570554-130576503:+|nuORF nc|ENSG00000136877|Q05932-3|FPGS nc|ENSG00000136877|Q05932-3|FPGS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.15277099609375 2 449.711265 897.407977 -0.069421 -3.1219E-05 0.32761 0.00014733 0.25819 0.00011611 449.71130341310396 55.848 2.1377 52.672 51.794 53.932 -3.1761 117 60 3 0 0 0 0.66537 1 10583 10583 8.5933 0 1 6172400 8908 4048 5632 5636 9093 9093 -0.044830775071318385 EALEEGGPP 9 Unmodified _EALEEGGPP_ 0 0 0 nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS;ENST00000488506.5_1_9:130570554-130575491:+|nuORF;ENST00000467826.5_1_9:130570554-130576503:+|nuORF nc|ENSG00000136877|Q05932-3|FPGS nc|ENSG00000136877|Q05932-3|FPGS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 449.711265 897.407977 -0.29574 -0.000133 0.49145 0.00022101 0.19571 8.8011E-05 449.7114197589818 55.775 1.9934 52.891 51.839 53.833 -2.8837 0.11462 0.00013953 NaN 8.5933 105 57 2 NaN NaN NaN NaN 0 NaN NaN 0 10618000 8909 4048 5632 5636 -0.044830775071318385 EALEGGGPLH 10 Unmodified _EALEGGGPLH_ 0 0 0 VASP|p.P119Lfs*34|1|0.18|ENSG00000125753|chr19:45521330-45521330|C/-|frameshift_variant VASP|p.P119Lfs*34|1|0.18|ENSG00000125753|chr19:45521330-45521330|C/-|frameshift_variant VASP|p.P119Lfs*34|1|0.18|ENSG00000125753|chr19:45521330-45521330|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2655944824219 2 490.245806 978.47706 0.098749 4.8411E-05 0.13815 6.7728E-05 0.2369 0.00011614 490.24588119881207 74.562 1.0771 70.968 70.396 71.473 -3.594 63 30 3 0 0 0 0.59928 1 14241 14241 19.257 0 1 11323000 8910 26568 5633 5637 9094 9094 -0.013039934875678227 EALEHILVTFH 11 Unmodified _EALEHILVTFH_ 0 0 0 REV__nc|ENSG00000064886|Q15782-5|CHI3L2 REV__nc|ENSG00000064886|Q15782-5|CHI3L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2152404785156 3 436.903072 1307.68739 -0.45283 -0.00019784 1.904 0.00083186 1.4512 0.00063402 437.2377624936317 105.95 0.63032 101.69 101.31 101.94 -4.2638 25 17 2 0 0 0 0.79196 1 20856 20856 4.7159 0 1 696900 + 8911 14175 5634 5638 9095 9095 0.04585044114628545 EALEQRYR 8 Unmodified _EALEQRYR_ 0 0 0 REV__nc|ENSG00000243708|P0C869-4|PLA2G4B REV__nc|ENSG00000243708|P0C869-4|PLA2G4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.261474609375 2 532.777805 1063.54106 0.27555 0.00014681 -0.25179 -0.00013415 0.023763 1.2661E-05 532.7776818242285 22.233 0.87785 20.78 20.562 21.44 -1.4535 31 24 2 0 0 0 0.74398 1 3505 3505 7.9102 0.62092 1 487680 + 8912 19802 5635 5639 9096 9096 0.011827866693693068 EALERRTDP 9 Unmodified _EALERRTDP_ 0 0 0 REV__nc|ENSG00000163875|Q9HAF1-2|MEAF6 REV__nc|ENSG00000163875|Q9HAF1-2|MEAF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7803344726562 2 543.780544 1085.54654 0.083072 4.5173E-05 0.36822 0.00020023 0.45129 0.0002454 543.7803637971817 25.159 0.45334 23.625 23.435 23.889 -1.5342 23 12 2 0 0 0 0.58804 1 4087 4087 13.906 3.7555 1 1046300 + 8913 24133 5636 5640 9097 9097 0.0071846546118194965 EALESLSAT 9 Unmodified _EALESLSAT_ 0 0 0 CON__P00735 CON__P00735 CON__P00735 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2360534667969 2 460.732197 919.449842 0.20607 9.4944E-05 0.38456 0.00017718 0.59064 0.00027212 460.7322773238924 62.026 0.72466 58.786 58.519 59.243 -3.2395 28 20 2 0 0 0 0.32967 1 11629 11629 11.749 0 1 1263800 + 8914 648 5637 5641 9098 9098 -0.013105218185955891 EALETVYHL 9 Unmodified _EALETVYHL_ 0 0 0 REV__ENSG00000162654|ENST00000355754|GBP4 REV__ENSG00000162654|ENST00000355754|GBP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 358.8997802734375 3 358.853718 1073.53933 NaN NaN NaN NaN NaN NaN NaN 31.611 1 29.381 28.881 29.881 -2.2305 0 0 0 0.23508 1 5742 5742 2.7352 0 1 + 8915 17517 5638 5642 9099 9099 0.005497328607589225 EALFAGEAL 9 Unmodified _EALFAGEAL_ 0 0 0 REV__ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant REV__ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2304992675781 2 460.739825 919.465098 0.27874 0.00012843 -0.012532 -5.7738E-06 0.26621 0.00012265 460.7397651941916 116.76 0.8431 112.18 111.7 112.54 -4.5815 52 23 3 0 0 0 0.72864 1 22441 22441 11.64 2.2929 1 6048400 + 8916 16720 5639 5643 9100 9100 0.002143897692462815 EALFGVPND 9 Unmodified _EALFGVPND_ 0 0 0 ENSG00000173214|ENST00000671876|MFSD4B ENSG00000173214|ENST00000671876|MFSD4B ENSG00000173214|ENST00000671876|MFSD4B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2367248535156 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 31.702 1 29.676 29.176 30.176 -2.0264 0 0 0 0.19649 1 5480 5480 0.12781 0.0049496 1 8917 6277 5640 5644 9101 9101 -0.02654798236130773 EALFLLEK 8 Unmodified _EALFLLEK_ 0 0 0 nc|ENSG00000158079|A2A3K4|PTPDC1;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7810974121094 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 54.57 1 51.432 50.932 51.932 -3.1377 0 0 0 0.22699 1 10103 10103 4.2837 0 1 8918 5153 5641 5645 9102 9102 0.06612126217100922 EALGGSSPVT 10 Unmodified _EALGGSSPVT_ 0 0 0 ENST00000308027.6_1_17:6939578-6939698:+|nuORF ENST00000308027.6_1_17:6939578-6939698:+|nuORF ENST00000308027.6_1_17:6939578-6939698:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2374267578125 2 459.232364 916.450176 0.37663 0.00017296 -0.13654 -6.2705E-05 0.24009 0.00011026 459.232250680748 51.173 1.4342 51.173 50.536 51.97 0 118 40 5 0 0 0 0.67319 1 9610 9610 13.906 2.2658 1 109770000 8919 8623 5642 5646 9103 9103 -0.011391020987502998 EALGHTGRH 9 Unmodified _EALGHTGRH_ 0 0 0 ENST00000560573.1_1_15:89182370-89182579:+|nuORF ENST00000560573.1_1_15:89182370-89182579:+|nuORF ENST00000560573.1_1_15:89182370-89182579:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25762939453125 2 489.249215 976.483876 0.21762 0.00010647 1.7619 0.00086201 1.9795 0.00096848 489.2504741139054 117.06 0.88681 112.7 112.24 113.12 -4.3585 75 24 5 0 0 0 0.62102 1 22485 22485 11.64 1.4569 1 5574200 8920 11290 5643 5647 9104 9104 -0.005306358163352343 EALGKVESE 9 Unmodified _EALGKVESE_ 0 0 0 NES|p.P1439Qfs*11|1|0.19|ENSG00000132688|chr1:156669874-156669874|C/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES NES|p.P1439Qfs*11|1|0.19|ENSG00000132688|chr1:156669874-156669874|C/-|frameshift_variant NES|p.P1439Qfs*11|1|0.19|ENSG00000132688|chr1:156669874-156669874|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2428283691406 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 66.354 1 63.307 62.807 63.807 -3.047 0 0 0 0.18705 1 12854 12854 25.399 0 1 8921 3754 5644 5648 9105 9105 -0.005428329272831434 EALGRFHEVR 10 Unmodified _EALGRFHEVR_ 0 0 0 nc|ENSG00000159267|P50747|HLCS;ENSG00000159267|ENST00000674895|HLCS nc|ENSG00000159267|P50747|HLCS nc|ENSG00000159267|P50747|HLCS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.310546875 3 405.219395 1212.63635 NaN NaN NaN NaN NaN NaN NaN 32.13 1 32.13 31.63 32.63 0 0 0 0 0.22588 1 5826 5826 3.0723 0.57378 1 8922 5200 5645 5649 9106 9106 0.03854139860391115 EALGRLEAA 9 Unmodified _EALGRLEAA_ 0 0 0 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2562255859375 2 465.256174 928.497795 0.10396 4.8367E-05 0.041142 1.9142E-05 0.1451 6.7509E-05 465.2561819567488 53.761 1.3077 53.761 53.422 54.729 0 65 36 2 0 0 0 0.10573 1 10242 10242 53.833 0.42879 1 3925000 8923 7791 5646 5650 9107 9107 0.030685968920806772 EALGRLEAA 9 Unmodified _EALGRLEAA_ 0 0 0 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2400207519531 2 465.256174 928.497795 -0.064581 -3.0047E-05 -0.23525 -0.00010945 -0.29983 -0.0001395 465.25611791511335 45.073 0.57214 42.208 41.877 42.449 -2.8653 36 15 3 0 0 0 0.55539 1 8122 8122 16.149 0 1 1695500 8924 7791 5646 5650 9108 9108 0.030685968920806772 EALGSPRW 8 Unmodified _EALGSPRW_ 0 0 0 DCLK3|p.K99Efs*8|1|0.1|ENSG00000163673|chr3:36738365-36738366|-/C|frameshift_variant;DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant;ENSG00000163673|ENST00000636136|DCLK3 DCLK3|p.K99Efs*8|1|0.1|ENSG00000163673|chr3:36738365-36738366|-/C|frameshift_variant DCLK3|p.K99Efs*8|1|0.1|ENSG00000163673|chr3:36738365-36738366|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2388916015625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 100.85 1 96.693 96.193 97.193 -4.1594 0 0 0 0.21452 1 19826 19826 13.508 0.97634 1 8925 791 5647 5651 9109 9109 0.00036345066178000707 EALGSSGTPP 10 Unmodified _EALGSSGTPP_ 0 0 0 nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA nc|ENSG00000196588|Q969V6|MRTFA nc|ENSG00000196588|Q969V6|MRTFA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.223876953125 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 41.203 1 38.713 38.213 39.213 -2.4896 0 0 0 0.22588 1 7390 7390 10.074 0 1 8926 7287 5648 5652 9110 9110 -0.026113886158100286 EALGVSAEW 9 Unmodified _EALGVSAEW_ 0 0 0 REV__nc|ENSG00000165671|Q96L73-2|NSD1 REV__nc|ENSG00000165671|Q96L73-2|NSD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23260498046875 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 11.983 1 10.862 10.362 11.362 -1.1206 0 0 0 0.23508 1 1398 1398 4.3292 0 1 + 8927 17793 5649 5653 9111 9111 -0.02654798236142142 EALHANMEQ 9 Unmodified _EALHANMEQ_ 0 0 0 REV__PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant REV__PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2822875976562 2 521.734748 1041.45494 -0.33264 -0.00017355 -3.9024 -0.002036 -4.235 -0.0022096 521.734303095553 89.427 0.14101 85.383 85.276 85.417 -4.0443 5 3 2 0 0 0 0.87511 1 17040 17040 7.2892 6.4956 1 530540 + 8928 13834 5650 5654 9112 9112 -0.0641254122765531 EALHEQSSY 9 Unmodified _EALHEQSSY_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40 nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2612915039062 2 532.238178 1062.4618 -0.33613 -0.0001789 0.84736 0.000451 0.51123 0.00027209 532.2386558671228 37.213 0.58552 34.745 34.465 35.05 -2.4688 34 16 3 0 0 0 0.68435 1 6864 6864 7.2892 0.56607 1 1584100 8929 1686 5651 5655 9113 9113 -0.0669290507541973 EALHEQSSY 9 Unmodified _EALHEQSSY_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40 nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.238178 1062.4618 0.081544 4.3401E-05 0.11941 6.3556E-05 0.20096 0.00010696 532.2381973171421 34.674 0.54591 34.674 34.449 34.995 0 -0.070054 3.1953E-05 NaN 7.2892 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1133500 8930 1686 5651 5655 -0.0669290507541973 EALHEQSSY 9 Unmodified _EALHEQSSY_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40 nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.238178 1062.4618 0.46362 0.00024676 -0.30701 -0.0001634 0.15661 8.3354E-05 532.238065330039 37.132 0.51154 34.784 34.516 35.028 -2.3479 0.039538 -0.00042196 NaN 7.2892 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1575400 8931 1686 5651 5655 -0.0669290507541973 EALHEQSSY 9 Unmodified _EALHEQSSY_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40 nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.238178 1062.4618 0.29493 0.00015697 -0.19782 -0.00010529 0.097112 5.1687E-05 532.2382130805869 37.112 0.56535 34.774 34.521 35.086 -2.3375 0.030087 -0.00030573 NaN 7.2892 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1185700 8932 1686 5651 5655 -0.0669290507541973 EALHERLK 8 Unmodified _EALHERLK_ 0 0 0 REV__ENSG00000142621|ENST00000688493|FHAD1 REV__ENSG00000142621|ENST00000688493|FHAD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.01544189453125 3 332.525936 994.555979 0.33548 0.00011156 -0.3082 -0.00010248 0.027281 9.0716E-06 332.5257365719675 30.302 0.73275 28.409 27.928 28.661 -1.8928 39 20 3 0 0 0 1.0277 1 5132 5132 0.40072 0 1 1632700 + 8933 16680 5652 5656 9114 9114 0.05848278537371243 EALHERLK 8 Unmodified _EALHERLK_ 0 0 0 REV__ENSG00000142621|ENST00000688493|FHAD1 REV__ENSG00000142621|ENST00000688493|FHAD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 332.525936 994.555979 0.20071 6.674E-05 -0.46711 -0.00015533 -0.2664 -8.8586E-05 332.52577136187926 30.4 0.63002 28.284 27.909 28.539 -2.1167 -0.047805 -0.00024714 NaN 0.40072 32 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1424400 + 8934 16680 5652 5656 0.05848278537371243 EALHERLK 8 Unmodified _EALHERLK_ 0 0 0 REV__ENSG00000142621|ENST00000688493|FHAD1 REV__ENSG00000142621|ENST00000688493|FHAD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 332.525936 994.555979 -0.14261 -4.7421E-05 -0.097584 -3.2449E-05 -0.24019 -7.987E-05 332.52586396375955 30.383 0.63298 28.309 27.972 28.605 -2.0743 -0.022947 0.00012149 NaN 0.40072 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1113100 + 8935 16680 5652 5656 0.05848278537371243 EALHLRVWQEL 11 Unmodified _EALHLRVWQEL_ 0 0 0 ZSCAN25|p.T385Yfs*269|1|0.23|ENSG00000197037|chr7:99629534-99629535|-/T|frameshift_variant ZSCAN25|p.T385Yfs*269|1|0.23|ENSG00000197037|chr7:99629534-99629535|-/T|frameshift_variant ZSCAN25|p.T385Yfs*269|1|0.23|ENSG00000197037|chr7:99629534-99629535|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2414855957031 3 465.257738 1392.75138 NaN NaN NaN NaN NaN NaN NaN 56.715 1 53.82 53.32 54.32 -2.8944 0 0 0 0.22632 1 10872 10872 0.00056442 0 1 8936 26641 5653 5657 9115 9115 0.07071824271565674 EALHPVVADL 10 Unmodified _EALHPVVADL_ 0 0 0 REV__ENSG00000283632|ENST00000413988|EXOC3L2 REV__ENSG00000283632|ENST00000413988|EXOC3L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.261962890625 2 532.292756 1062.57096 0.63727 0.00033921 -0.9051 -0.00048178 -0.26783 -0.00014256 532.2922986655303 115.86 0.8242 111.28 110.91 111.73 -4.5815 51 23 3 0 0 0 0.51199 1 22214 22214 24.021 0 1 3423400 + 8937 19960 5654 5658 9116 9116 0.04217725614716983 EALHSSPEDP 10 Unmodified _EALHSSPEDP_ 0 0 0 ENSG00000185133|ENST00000331075|INPP5J ENSG00000185133|ENST00000331075|INPP5J ENSG00000185133|ENST00000331075|INPP5J MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.279541015625 2 541.24346 1080.47237 0.41809 0.00022629 -0.53915 -0.00029181 -0.12106 -6.5523E-05 541.2433767366266 32.003 0.84735 29.772 29.446 30.294 -2.2305 44 23 3 0 0 0 0.79872 1 5912 5912 13.906 0 1 888720 8938 6964 5655 5659 9117 9117 -0.0646492242099157 EALIFKYG 8 Unmodified _EALIFKYG_ 0 0 0 REV__MUC6|p.N1717Tfs*10|1|0.03|ENSG00000184956|chr11:1017653-1017653|G/-|frameshift_variant REV__MUC6|p.N1717Tfs*10|1|0.03|ENSG00000184956|chr11:1017653-1017653|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1712951660156 3 314.176133 939.506569 NaN NaN NaN NaN NaN NaN NaN 99.235 1 94.965 94.465 95.465 -4.2692 0 0 0 0.21486 1 18968 18968 1.4819 0 1 + 8939 18924 5656 5660 9118 9118 0.03439570528564673 EALKAAGPAS 10 Unmodified _EALKAAGPAS_ 0 0 0 ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2332458496094 2 457.750724 913.486896 -0.018295 -8.3747E-06 0.37945 0.00017369 0.36115 0.00016532 457.75083410972843 26.195 0.86877 24.273 23.741 24.609 -1.9222 44 24 3 0 0 0 0.63858 1 4283 4283 17.113 1.2657 1 2160900 8940 7302 5657 5661 9119 9119 0.026691945178072274 EALKAETSA 9 Unmodified _EALKAETSA_ 0 0 0 REV__ENST00000498240.6_1_16:3355454-3358318:+|nuORF REV__ENST00000498240.6_1_16:3355454-3358318:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2392883300781 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 69.769 1 66.379 65.879 66.879 -3.3903 0 0 0 0.23508 1 13200 13200 11.64 1.4569 1 + 8941 22412 5658 5662 9120 9120 0.0033318441827532297 EALKEEQN 8 Unmodified _EALKEEQN_ 0 0 0 nc|ENSG00000216937|Q96M83-5|CCDC7;nc|ENSG00000216937|Q96M83-4|CCDC7;nc|ENSG00000216937|Q96M83-3|CCDC7;ENSG00000216937|ENST00000639629|CCDC7;nc|ENSG00000216937|Q96M83-2|CCDC7 nc|ENSG00000216937|Q96M83-5|CCDC7 nc|ENSG00000216937|Q96M83-5|CCDC7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 962.4684448242188 1 960.463266 959.45599 -0.12963 -0.00012451 0.25324 0.00024323 0.12361 0.00011872 960.4634375517012 51.968 0.68502 49.086 48.766 49.451 -2.8824 46 19 3 0 0 0 0.73402 1 9921 9921 7.9102 3.9658 1 6391700 8942 12598 5659 5663 9121 9121 -0.02536003587090363 EALKERIRELH 11 Unmodified _EALKERIRELH_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1;REV__RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant REV__nc|ENSG00000196218|P21817-3|RYR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25 3 465.268525 1392.78375 NaN NaN NaN NaN NaN NaN NaN 83.956 1 80.046 79.546 80.546 -3.9093 0 0 0 0.22632 1 15954 15954 1.2503 0 1 + 8943 19227;19428 5660 5664 9122 9122 0.103066116745822 EALKETHE 8 Unmodified _EALKETHE_ 0 0 0 REV__nc|ENSG00000185973|Q9NVH6-4|TMLHE REV__nc|ENSG00000185973|Q9NVH6-4|TMLHE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7372741699219 2 478.737814 955.461075 -0.073254 -3.5069E-05 0.3603 0.00017249 0.28705 0.00013742 478.73793313650765 50.233 1.1586 47.226 46.774 47.933 -3.0068 57 33 2 0 0 0 0.62642 1 9352 9352 20.454 3.3407 1 26733000 + 8944 19003 5661 5665 9123 9123 -0.018436997244634767 EALKFKIL 8 Unmodified _EALKFKIL_ 0 0 0 nc|ENSG00000139151|Q86YW0-2|PLCZ1;nc|ENSG00000139151|Q86YW0-3|PLCZ1;ENSG00000139151|ENST00000266505|PLCZ1 nc|ENSG00000139151|Q86YW0-2|PLCZ1 nc|ENSG00000139151|Q86YW0-2|PLCZ1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7654724121094 2 481.307678 960.600803 NaN NaN NaN NaN NaN NaN NaN 52.048 1 52.048 51.548 52.548 0 0 0 0 0.21486 1 9886 9886 2.5775 0 1 8945 4225 5662 5666 9124 9124 0.11892709350718178 EALKFKIL 8 Unmodified _EALKFKIL_ 0 0 0 nc|ENSG00000139151|Q86YW0-2|PLCZ1;nc|ENSG00000139151|Q86YW0-3|PLCZ1;ENSG00000139151|ENST00000266505|PLCZ1 nc|ENSG00000139151|Q86YW0-2|PLCZ1 nc|ENSG00000139151|Q86YW0-2|PLCZ1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2380065917969 2 481.307678 960.600803 NaN NaN NaN NaN NaN NaN NaN 22.669 1 21.116 20.616 21.616 -1.5532 0 0 0 0.2396 1 3883 3883 0 0 1 8946 4225 5662 5666 9125 9125 0.11892709350718178 EALKHDLSAP 10 Unmodified _EALKHDLSAP_ 0 0 0 REV__nc|ENSG00000187239|Q96RU3-4|FNBP1 REV__nc|ENSG00000187239|Q96RU3-4|FNBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2832641601562 2 540.787838 1079.56112 0.13787 7.456E-05 0.24788 0.00013405 0.38576 0.00020861 540.7877948696911 75.167 0.38055 71.802 71.521 71.902 -3.3643 15 10 2 0 0 0 0.57807 1 14618 14618 20.415 4.2654 1 1199200 + 8947 19080 5663 5667 9126 9126 0.024525376093379236 EALKHLAPK 9 Unmodified _EALKHLAPK_ 0 0 0 REV__UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant REV__UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.0433044433594 3 336.206315 1005.59712 -1.5903 -0.00053466 1.6291 0.00054772 0.038837 1.3057E-05 336.2072827869778 20.188 3.8809 18.553 18.083 21.963 -1.6351 235 111 6 0 0 0 0.8799 1 3469 3469 0.96228 0 1 538080000 + 8948 17125 5664 5668 9127 9127 0.09454039576849027 EALKLRDV 8 Unmodified _EALKLRDV_ 0 0 0 REV__ENST00000547915.1_1_12:112327863-112331371:+|nuORF REV__ENST00000547915.1_1_12:112327863-112331371:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1907653808594 3 315.190553 942.549831 NaN NaN NaN NaN NaN NaN NaN 108.67 1 104.35 103.85 104.85 -4.32 0 0 0 0.21486 1 21414 21414 3.5965 0 1 + 8949 14516 5665 5669 9128 9128 0.0762576030585933 EALKQSPPPD 10 Unmodified _EALKQSPPPD_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;ENST00000490135.6_1_6:152637953-152655276:-|nuORF ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.278076171875 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 64.576 1 61.579 61.079 62.079 -2.9975 0 0 0 0.22588 1 12491 12491 11.495 0.67078 1 8950 3655 5666 5670 9129 9129 0.008088313724329055 EALKTVHM 8 Unmodified _EALKTVHM_ 0 0 0 REV__ENSG00000182885|ENST00000333493|ADGRG3 REV__ENSG00000182885|ENST00000333493|ADGRG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2589111328125 2 464.74967 927.484787 -0.11177 -5.1946E-05 -0.43366 -0.00020154 -0.54543 -0.00025349 464.74949706583493 114.5 0.67267 110.03 109.79 110.46 -4.4726 32 18 2 0 0 0 0.68128 1 22523 22523 16.942 0 1 2074600 + 8951 18807 5667 5671 9130 9130 0.018144425083505666 EALLIIGYLF 10 Unmodified _EALLIIGYLF_ 0 0 0 REV__nc|ENSG00000046653|Q13491-2|GPM6B REV__nc|ENSG00000046653|Q13491-2|GPM6B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.338623046875 2 576.339175 1150.6638 NaN NaN NaN NaN NaN NaN NaN 31.417 1 29.269 28.769 29.769 -2.1483 0 0 0 0.22588 1 5413 5413 3.5965 0.60125 1 + 8952 14057 5668 5672 9131 9131 0.09449230348081983 EALLMNQT 8 Unmodified _EALLMNQT_ 0 0 0 ENST00000592042.5_1_17:74621414-74633692:-|nuORF;ENSG00000070526|ENST00000156626|ST6GALNAC1 ENST00000592042.5_1_17:74621414-74633692:-|nuORF ENST00000592042.5_1_17:74621414-74633692:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23236083984375 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 31.05 1 28.933 28.433 29.433 -2.1167 0 0 0 0.20896 1 5625 5625 18.135 2.2878 1 8953 1434 5669 5673 9132 9132 -0.014418541082250158 EALLSHFL 8 Unmodified _EALLSHFL_ 0 0 0 ENST00000436747.5_1_2:242688429-242688768:+|nuORF ENST00000436747.5_1_2:242688429-242688768:+|nuORF ENST00000436747.5_1_2:242688429-242688768:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2592468261719 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 116.31 1 111.95 111.45 112.45 -4.3585 0 0 0 0.21486 1 22390 22390 9.3474 0 1 8954 9843 5670 5674 9133 9133 0.034706863857991266 EALLTLMQY 9 Unmodified _EALLTLMQY_ 0 0 0 REV__nc|ENSG00000051009|Q8N612-2|FHIP1B REV__nc|ENSG00000051009|Q8N612-2|FHIP1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2833251953125 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 70.911 1 70.911 70.411 71.411 0 0 0 0 0.22621 1 13735 13735 15.847 2.3393 1 + 8955 14086 5671 5675 9134 9134 0.015478476484986459 EALLTQKL 8 Unmodified _EALLTQKL_ 0 0 0 REV__nc|ENSG00000167608|Q7Z404-1|TMC4 REV__nc|ENSG00000167608|Q7Z404-1|TMC4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2381286621094 2 458.279118 914.543683 NaN NaN NaN NaN NaN NaN NaN 67.044 1 63.717 63.217 64.217 -3.3268 0 0 0 0.20618 1 12635 12635 20.454 4.6064 1 + 8956 17943 5672 5676 9135 9135 0.08299242074338053 EALLWYSEA 9 Unmodified _EALLWYSEA_ 0 0 0 nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;TTC21A|p.L505Pfs*116|1|0.3|ENSG00000168026|chr3:39126352-39126353|-/C|frameshift_variant nc|ENSG00000168026|Q8NDW8-6|TTC21A nc|ENSG00000168026|Q8NDW8-6|TTC21A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2622680664062 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 63.867 1 60.451 59.951 60.951 -3.4158 0 0 0 0.21065 1 11942 11942 20.454 2.0805 1 8957 5870 5673 5677 9136 9136 -0.02425956030560883 EALNRTPL 8 Unmodified _EALNRTPL_ 0 0 0 REV__ENST00000557266.5_1_15:91500194-91504996:+|nuORF REV__ENST00000557266.5_1_15:91500194-91504996:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.228271484375 2 457.258717 912.50288 -0.06528 -2.985E-05 0.13341 6.1003E-05 0.06813 3.1153E-05 457.2587561982334 80.762 0.72892 76.923 76.532 77.261 -3.8392 46 20 3 0 0 0 0.69713 1 15289 15289 13.508 0 1 2686000 + 8958 17894 5674 5678 9137 9137 0.04312900754723614 EALNVAARL 9 Unmodified _EALNVAARL_ 0 0 0 REV__ENSG00000154529|ENST00000377561|CNTNAP3B REV__ENSG00000154529|ENST00000377561|CNTNAP3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7232666015625 2 478.779816 955.545079 -0.2519 -0.0001206 0.3634 0.00017399 0.1115 5.3385E-05 478.7798772836425 91.534 0.62323 91.534 91.217 91.84 0 25 17 2 0 0 0 0.52396 1 17940 17940 18.146 3.3081 1 2597600 + 8959 17185 5675 5679 9138 9138 0.0655287616308442 EALNVAARL 9 Unmodified _EALNVAARL_ 0 0 0 REV__ENSG00000154529|ENST00000377561|CNTNAP3B REV__ENSG00000154529|ENST00000377561|CNTNAP3B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.779816 955.545079 -0.2519 -0.0001206 0.3634 0.00017399 0.1115 5.3385E-05 478.7798772836425 91.534 0.62323 91.534 91.217 91.84 0 0 0 NaN 18.146 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2597600 + 8960 17185 5675 5679 0.0655287616308442 EALPGPAGHA 10 Unmodified _EALPGPAGHA_ 0 0 0 nc|ENSG00000184916|Q9Y219-2|JAG2;ENSG00000184916|ENST00000331782|JAG2;ENST00000546616.1_1_14:105609034-105613077:-|nuORF nc|ENSG00000184916|Q9Y219-2|JAG2 nc|ENSG00000184916|Q9Y219-2|JAG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23516845703125 2 460.235242 918.45593 -0.18778 -8.6423E-05 0.54259 0.00024972 0.35481 0.0001633 460.23544590090756 57.762 0.56388 54.851 54.604 55.168 -2.9105 22 15 2 0 0 0 0.46704 1 11141 11141 0.84494 0 1 715910 8961 6942 5676 5680 9139 9139 -0.006559587964261482 EALQGEKRY 9 Unmodified _EALQGEKRY_ 0 0 0 nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B nc|ENSG00000156970|O60566-3|BUB1B nc|ENSG00000156970|O60566-3|BUB1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7696533203125 2 547.285463 1092.55637 0.00096923 5.3045E-07 1.2873 0.00070454 1.2883 0.00070507 547.2860831930944 52.46 1.6897 49.576 48.695 50.385 -2.8837 197 48 6 0 0 0 0.40602 1 10121 10121 25.399 0.51775 1 85085000 8962 5113 5677 5681 9140 9140 0.01379653466574382 EALQKDLY 8 Unmodified _EALQKDLY_ 0 0 0 REV__tr|U7SIX5|U7SIX5_FUSNUTranscriptionterminationfactorRhoOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rhoPE=3SV=1 REV__tr|U7SIX5|U7SIX5_FUSNUTranscriptionterminationfactorRhoOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rhoPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2574768066406 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 83.764 1 83.764 83.264 84.264 0 0 0 0 0.20294 1 16332 16332 23.148 0 1 + 8963 24898 5678 5682 9141 9141 0.012100613149982564 EALQQEHLD 9 Unmodified _EALQQEHLD_ 0 0 0 ENSG00000090615|ENST00000450791|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;nc|ENSG00000090615|Q08378-4|GOLGA3 ENSG00000090615|ENST00000450791|GOLGA3 ENSG00000090615|ENST00000450791|GOLGA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.261962890625 2 541.759278 1081.504 -0.24602 -0.00013329 1.6418 0.00088946 1.3958 0.00075617 542.2615042367587 19.775 0.14151 18.45 18.346 18.487 -1.3251 5 3 2 0 0 0 0.84208 1 3037 3037 3.9444 0 1 465730 8964 1790 5679 5683 9142 9142 -0.033489296670495605 EALQQRLQG 9 Unmodified _EALQQRLQG_ 0 0 0 ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT;PCNT|p.G2137Vfs*2|1|0.18|ENSG00000160299|chr21:46416323-46416323|G/-|frameshift_variant ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2821044921875 2 521.78563 1041.55671 -0.74184 -0.00038708 -2.0035 -0.0010454 -2.7454 -0.0014325 522.2854728596142 108.46 0.23972 104.14 104.04 104.28 -4.32 8 6 2 0 0 0 0.62102 1 21357 21357 11.64 0 1 480850 8965 5247 5680 5684 9143 9143 0.037590731864384 EALQRQWD 8 Unmodified _EALQRQWD_ 0 0 0 GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant;ENSG00000090581|ENST00000204679|GNPTG;ENST00000527076.1_1_16:1412406-1412616:+|nuORF;ENST00000527168.5_1_16:1412406-1413089:+|nuORF GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.685546875 2 523.256705 1044.49886 0.12472 6.5261E-05 -0.54438 -0.00028485 -0.41966 -0.00021959 523.2563293014082 17.569 0.28615 17.569 17.445 17.731 0 10 7 2 0 0 0 1.0254 1 2817 2817 5.2307 3.1709 1 908570 8966 1789 5681 5685 9144 9144 -0.021611887390008633 EALQRQWD 8 Unmodified _EALQRQWD_ 0 0 0 GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant;ENSG00000090581|ENST00000204679|GNPTG;ENST00000527076.1_1_16:1412406-1412616:+|nuORF;ENST00000527168.5_1_16:1412406-1413089:+|nuORF GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6903686523438 2 523.256705 1044.49886 -0.95238 -0.00049834 0.44521 0.00023296 -0.50717 -0.00026538 523.2568907780725 18.853 0.25056 17.528 17.398 17.648 -1.3251 11 6 3 0 0 0 0.77935 1 2831 2831 5.2307 0 1 808120 8967 1789 5681 5685 9145 9145 -0.021611887390008633 EALQRQWD 8 Unmodified _EALQRQWD_ 0 0 0 GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant;ENSG00000090581|ENST00000204679|GNPTG;ENST00000527076.1_1_16:1412406-1412616:+|nuORF;ENST00000527168.5_1_16:1412406-1413089:+|nuORF GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.256705 1044.49886 -0.15718 -8.2244E-05 -0.016768 -8.7738E-06 -0.17395 -9.1018E-05 523.2566814213111 18.958 0.20558 17.647 17.521 17.726 -1.3109 0.099654 1.571E-05 NaN 5.2307 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 767180 8968 1789 5681 5685 -0.021611887390008633 EALQRQWD 8 Unmodified _EALQRQWD_ 0 0 0 GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant;ENSG00000090581|ENST00000204679|GNPTG;ENST00000527076.1_1_16:1412406-1412616:+|nuORF;ENST00000527168.5_1_16:1412406-1413089:+|nuORF GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.256705 1044.49886 -1.0083 -0.00052759 0.74342 0.000389 -0.26487 -0.0001386 523.2571120477828 19.08 0.44983 17.445 17.325 17.775 -1.6351 -0.10213 0.00081125 NaN 5.2307 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 502710 8969 1789 5681 5685 -0.021611887390008633 EALRAPGKVPN 11 Unmodified _EALRAPGKVPN_ 0 0 0 ENSG00000178814|ENST00000618853|OPLAH;ENST00000527993.1_1_8:145108066-145109551:-|nuORF ENSG00000178814|ENST00000618853|OPLAH ENSG00000178814|ENST00000618853|OPLAH MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3324584960938 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 42.265 1 39.659 39.159 40.159 -2.606 0 0 0 0.23379 1 7596 7596 5.2969 0.54088 1 8970 6593 5682 5686 9146 9146 0.0765590814596635 EALRDVLSY 9 Unmodified _EALRDVLSY_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1;ENST00000492058.1_1_2:183799470-183800113:-|nuORF nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2850341796875 2 533.282389 1064.55022 0.46978 0.00025053 0.49058 0.00026162 0.96036 0.00051214 533.7845601421874 103.37 0.51361 103.37 103.07 103.58 0 34 14 3 0 0 0 0.44932 2 20338 20306;20338 22.736 0 1 1966100 8971 1318 5683 5687 9147;9148 9148 0.020531352350417365 EALREKLRH 9 Unmodified _EALREKLRH_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-3|CNTRL;nc|ENSG00000119397|Q7Z7A1-4|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3367919921875 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 28.556 1 28.556 28.056 29.056 0 0 0 0 0.23508 1 5075 5075 4.3292 0 1 8972 3073 5684 5688 9149 9149 0.08778730240078403 EALRGCPQ 8 Unmodified _EALRGCPQ_ 0 0 0 ITGAM|p.H481Ifs*44|1|0.12|ENSG00000169896|chr16:31297593-31297593|C/-|frameshift_variant;ENSG00000169896|ENST00000544665|ITGAM;nc|ENSG00000169896|P11215-2|ITGAM ITGAM|p.H481Ifs*44|1|0.12|ENSG00000169896|chr16:31297593-31297593|C/-|frameshift_variant ITGAM|p.H481Ifs*44|1|0.12|ENSG00000169896|chr16:31297593-31297593|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2164306640625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 109.92 1 105.55 105.05 106.05 -4.3776 0 0 0 0.21486 1 21663 21663 12.532 3.1841 1 8973 6018 5685 5689 9150 9150 -0.023875877025943737 EALRGCPQ 8 Unmodified _EALRGCPQ_ 0 0 0 ITGAM|p.H481Ifs*44|1|0.12|ENSG00000169896|chr16:31297593-31297593|C/-|frameshift_variant;ENSG00000169896|ENST00000544665|ITGAM;nc|ENSG00000169896|P11215-2|ITGAM ITGAM|p.H481Ifs*44|1|0.12|ENSG00000169896|chr16:31297593-31297593|C/-|frameshift_variant ITGAM|p.H481Ifs*44|1|0.12|ENSG00000169896|chr16:31297593-31297593|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2165832519531 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 132.1 1 127.3 126.8 127.8 -4.799 0 0 0 0.21486 1 25431 25431 8.5933 0 1 8974 6018 5685 5689 9151 9151 -0.023875877025943737 EALRLPKKPT 10 Unmodified _EALRLPKKPT_ 0 0 0 REV__ENST00000318003.11_1_19:14041204-14041669:+|nuORF REV__ENST00000318003.11_1_19:14041204-14041669:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3143310546875 2 576.858598 1151.70264 0.017791 1.0263E-05 -2.2322 -0.0012877 -2.2144 -0.0012774 576.8574896910696 22.612 0.60471 21.159 20.801 21.405 -1.4535 22 16 2 0 0 0 0.91149 1 3595 3595 6.7232 0 1 607050 + 8975 20531 5686 5690 9152 9152 0.1328595570246307 EALRLPKKPT 10 Unmodified _EALRLPKKPT_ 0 0 0 REV__ENST00000318003.11_1_19:14041204-14041669:+|nuORF REV__ENST00000318003.11_1_19:14041204-14041669:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.858598 1151.70264 -0.44179 -0.00025485 -2.2878 -0.0013197 -2.7296 -0.0015746 576.8584282323858 23.208 0.16792 21.419 21.358 21.526 -1.7886 0.13046 -4.9718E-05 NaN 6.7232 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 300370 + 8976 20531 5686 5690 0.1328595570246307 EALRMQALY 9 Unmodified _EALRMQALY_ 0 0 0 ENSG00000123607|ENST00000243344|TTC21B;nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF;TTC21B|p.D262Ifs*2|1|0.39|ENSG00000123607|chr2:165932984-165932984|C/-|frameshift_variant ENSG00000123607|ENST00000243344|TTC21B ENSG00000123607|ENST00000243344|TTC21B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7862548828125 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 56.662 1 53.486 52.986 53.986 -3.1761 0 0 0 0.23508 1 10547 10547 7.9102 1.187 1 8977 3276 5687 5691 9153 9153 0.015977855998926316 EALRNERHQF 10 Unmodified _EALRNERHQF_ 0 0 0 REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.8884582519531 3 433.889937 1298.64798 NaN NaN NaN NaN NaN NaN NaN 31.999 1 29.768 29.268 30.268 -2.2305 0 0 0 0.22588 1 5821 5821 1.9064 0.1641 1 + 8978 19389 5688 5692 9154 9154 0.010603368837337257 EALRNERHQF 10 Unmodified _EALRNERHQF_ 0 0 0 REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 433.8889465332031 3 433.889937 1298.64798 NaN NaN NaN NaN NaN NaN NaN 33.051 1 30.905 30.405 31.405 -2.1468 0 0 0 0.22588 1 5754 5754 1.9064 0.31409 1 + 8979 19389 5688 5692 9155 9155 0.010603368837337257 EALRQSREH 9 Unmodified _EALRQSREH_ 0 0 0 ENSG00000187902|ENST00000376325|SHISA7;ENST00000416792.1_3_19:55944525-55949973:-|nuORF ENSG00000187902|ENST00000376325|SHISA7 ENSG00000187902|ENST00000376325|SHISA7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1177673339844 3 375.863499 1124.56867 NaN NaN NaN NaN NaN NaN NaN 18.98 1 17.655 17.155 18.155 -1.3251 0 0 0 0.23508 1 2872 2872 2.7352 0.82882 1 8980 7135 5689 5693 9156 9156 0.011366899296263 EALRRHIL 8 Unmodified _EALRRHIL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.5315856933594 3 336.541809 1006.6036 NaN NaN NaN NaN NaN NaN NaN 24.306 1 22.678 22.178 23.178 -1.6282 0 0 0 0.23664 1 4228 4228 3.2813 2.873 1 8981 7957 5690 5694 9157 9157 0.10055977528224957 EALRRPGE 8 Unmodified _EALRRPGE_ 0 0 0 ENST00000563492.1_1_16:65159877-65160000:-|nuORF ENST00000563492.1_1_16:65159877-65160000:-|nuORF ENST00000563492.1_1_16:65159877-65160000:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2548828125 2 464.253966 926.493378 0.1032 4.7911E-05 0.65481 0.000304 0.75801 0.00035191 464.253894989852 26.37 0.69917 24.735 24.548 25.247 -1.6347 33 19 3 0 0 0 0.69031 1 4374 4374 15.847 3.3156 1 1865600 8982 11331 5691 5695 9158 9158 0.027191324691898444 EALRTKPD 8 Unmodified _EALRTKPD_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;KDM3A|p.A825Gfs*25|1|0.17|ENSG00000115548|chr2:86480321-86480322|-/G|frameshift_variant ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25616455078125 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 65.454 1 62.171 61.671 62.671 -3.2832 0 0 0 0.21486 1 12304 12304 9.3474 0.75416 1 8983 2865 5692 5696 9159 9159 0.030685968920806772 EALRVWEET 9 Unmodified _EALRVWEET_ 0 0 0 REV__nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3 REV__nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.1907653808594 3 378.192623 1131.55604 NaN NaN NaN NaN NaN NaN NaN 57.586 1 57.586 57.086 58.086 0 0 0 0 0.23508 1 11012 11012 4.897 0.70751 1 + 8984 15568 5693 5697 9160 9160 -0.0044776625329632225 EALRVWEET 9 Unmodified _EALRVWEET_ 0 0 0 REV__nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3 REV__nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 378.19091796875 3 378.192623 1131.55604 NaN NaN NaN NaN NaN NaN NaN 97.639 1 93.72 93.22 94.22 -3.9194 0 0 0 0.23508 1 18739 18739 4.897 0 1 + 8985 15568 5693 5697 9161 9161 -0.0044776625329632225 EALSEVLNS 9 Unmodified _EALSEVLNS_ 0 0 0 ENSG00000177694|ENST00000454872|NAALADL2 ENSG00000177694|ENST00000454872|NAALADL2 ENSG00000177694|ENST00000454872|NAALADL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2528381347656 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 32.326 1 30.095 29.595 30.595 -2.2305 0 0 0 0.22621 1 5887 5887 15.847 1.0089 1 8986 6532 5694 5698 9162 9162 -0.005428329272831434 EALSITEKA 9 Unmodified _EALSITEKA_ 0 0 0 REV__ENSG00000131370|ENST00000383791|SH3BP5 REV__ENSG00000131370|ENST00000383791|SH3BP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7661437988281 2 481.263665 960.512776 -0.18768 -9.0324E-05 0.82235 0.00039577 0.63466 0.00030544 481.2640723865913 53.768 0.97116 50.884 50.317 51.288 -2.8837 65 27 4 0 0 0 0.54076 1 10153 10153 17.113 0.1706 1 12351000 + 8987 16068 5695 5699 9163 9163 0.030940439694177257 EALSLSNEAP 10 Unmodified _EALSLSNEAP_ 0 0 0 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 515.2412719726562 2 515.756204 1029.49785 0.32222 0.00016619 -0.72601 -0.00037445 -0.4038 -0.00020826 515.755949901952 30.322 0.55898 28.205 27.877 28.435 -2.1167 23 15 2 0 0 0 0.90598 1 5435 5435 9.3831 2.66 1 586840 + 8988 18616 5696 5700 9164 9164 -0.01571447898572842 EALSLSNEAP 10 Unmodified _EALSLSNEAP_ 0 0 0 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 515.756204 1029.49785 -0.23447 -0.00012093 0.22761 0.00011739 -0.0068558 -3.5359E-06 515.7563483118034 30.163 0.42055 28.27 27.996 28.416 -1.8928 0.03182 0.00057714 NaN 9.3831 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 801110 + 8989 18616 5696 5700 -0.01571447898572842 EALSLSNEAP 10 Unmodified _EALSLSNEAP_ 0 0 0 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 515.756204 1029.49785 0.54367 0.0002804 -0.50779 -0.0002619 0.035884 1.8507E-05 515.755683105765 30.314 0.52761 28.24 27.972 28.5 -2.0743 0.0015551 -0.00018143 NaN 9.3831 28 14 3 NaN NaN NaN NaN 0 NaN NaN 0 517620 + 8990 18616 5696 5700 -0.01571447898572842 EALSLTAQS 9 Unmodified _EALSLTAQS_ 0 0 0 REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2397766113281 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 36.218 1 33.942 33.442 34.442 -2.2766 0 0 0 0.19652 1 6385 6385 0.20686 0 1 + 8991 19514 5697 5701 9165 9165 0.0033318441827532297 EALSPSRFH 9 Unmodified _EALSPSRFH_ 0 0 0 REV__nc|ENSG00000216671|P0C7X3|CCNYL3 REV__nc|ENSG00000216671|P0C7X3|CCNYL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2686157226562 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 22.366 1 20.578 20.078 21.078 -1.7886 0 0 0 0.23508 1 3547 3547 10.824 3.5347 1 + 8992 24273 5698 5702 9166 9166 3.4016406743830885E-05 EALSSVRSA 9 Unmodified _EALSSVRSA_ 0 0 0 REV__ENSG00000158195|ENST00000618852|WASF2 REV__ENSG00000158195|ENST00000618852|WASF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24639892578125 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 22.532 1 22.532 22.032 23.032 0 0 0 0 0.20294 1 3815 3815 22.736 3.4793 1 + 8993 17328 5699 5703 9167 9167 0.014560065124328503 EALSSVRSA 9 Unmodified _EALSSVRSA_ 0 0 0 REV__ENSG00000158195|ENST00000618852|WASF2 REV__ENSG00000158195|ENST00000618852|WASF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2470703125 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 21.387 1 20.002 19.502 20.502 -1.3847 0 0 0 0.23508 1 3363 3363 9.3831 0 1 + 8994 17328 5699 5703 9168 9168 0.014560065124328503 EALSSVRSA 9 Unmodified _EALSSVRSA_ 0 0 0 REV__ENSG00000158195|ENST00000618852|WASF2 REV__ENSG00000158195|ENST00000618852|WASF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24664306640625 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 23.815 1 22.281 21.781 22.781 -1.5342 0 0 0 0.23277 1 3859 3859 13.906 0 1 + 8995 17328 5699 5703 9169 9169 0.014560065124328503 EALTLMVAA 9 Unmodified _EALTLMVAA_ 0 0 0 REV__nc|ENSG00000054267|Q4LE39-2|ARID4B REV__nc|ENSG00000054267|Q4LE39-2|ARID4B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23980712890625 2 459.751879 917.489204 NaN NaN NaN NaN NaN NaN NaN 33.413 1 33.413 32.913 33.913 0 0 0 0 0.23508 1 6098 6098 12.532 0 1 + 8996 14102 5700 5704 9170 9170 0.027159069312574502 EALTQGPGKW 10 Unmodified _EALTQGPGKW_ 0 0 0 REV__ENST00000243786.2_1_2:220436948-220437065:+|nuORF REV__ENST00000243786.2_1_2:220436948-220437065:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7828979492188 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 18.407 1 18.407 17.907 18.907 0 0 0 0 0.22588 1 2960 2960 6.2058 0.47393 1 + 8997 20095 5701 5705 9171 9171 0.01120554954900399 EALVDTLTG 9 Unmodified _EALVDTLTG_ 0 0 0 ENSG00000198700|ENST00000361565|IPO9;IPO9|p.K22N|1|0.24|ENSG00000198700|chr1:201829275-201829275|G/T|missense_variant;ENST00000464348.5_1_1:201798292-201804083:+|nuORF;IPO9|p.Q68Pfs*30|1|0.19|ENSG00000198700|chr1:201847313-201847314|-/C|frameshift_variant ENSG00000198700|ENST00000361565|IPO9 ENSG00000198700|ENST00000361565|IPO9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24383544921875 2 459.742565 917.470577 0.21613 9.9365E-05 0.042501 1.9539E-05 0.25863 0.0001189 459.74250559869716 113.76 0.95047 113.76 113.34 114.29 0 72 26 4 0 0 0 0.084379 1 22305 22305 8.9129 0 1 23098000 8998 7475 5702 5706 9172 9172 0.008540685610455512 EALVDTLTG 9 Unmodified _EALVDTLTG_ 0 0 0 ENSG00000198700|ENST00000361565|IPO9;IPO9|p.K22N|1|0.24|ENSG00000198700|chr1:201829275-201829275|G/T|missense_variant;ENST00000464348.5_1_1:201798292-201804083:+|nuORF;IPO9|p.Q68Pfs*30|1|0.19|ENSG00000198700|chr1:201847313-201847314|-/C|frameshift_variant ENSG00000198700|ENST00000361565|IPO9 ENSG00000198700|ENST00000361565|IPO9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24420166015625 2 459.742565 917.470577 0.40568 0.00018651 -0.24368 -0.00011203 0.162 7.4478E-05 459.74239806167276 118.35 1.0428 113.74 113.21 114.25 -4.6106 70 28 3 0 0 0 0.2213 1 22774 22774 6.4869 0 1 22694000 8999 7475 5702 5706 9173 9173 0.008540685610455512 EALVENVST 9 Unmodified _EALVENVST_ 0 0 0 ENSG00000189139|ENST00000340446|FSCB ENSG00000189139|ENST00000340446|FSCB ENSG00000189139|ENST00000340446|FSCB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2466735839844 2 481.245472 960.476391 0.0083109 3.9996E-06 -1.106 -0.00053225 -1.0977 -0.00052825 481.24525748620704 67.196 0.73526 64.087 63.652 64.387 -3.1086 26 20 3 0 0 0 0.52396 1 12961 12961 18.146 0 1 977240 9000 7217 5703 5707 9174 9174 -0.005428329272717747 EALVQAHIY 9 Unmodified _EALVQAHIY_ 0 0 0 ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2778930664062 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 43.923 1 41.175 40.675 41.675 -2.7475 0 0 0 0.23508 1 7944 7944 12.532 3.1841 1 9001 5253 5704 5708 9175 9175 0.025174564432290936 EALWPEGK 8 Unmodified _EALWPEGK_ 0 0 0 ENSG00000126870|ENST00000407559|DYNC2I1 ENSG00000126870|ENST00000407559|DYNC2I1 ENSG00000126870|ENST00000407559|DYNC2I1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2407531738281 2 465.239993 928.465432 0.12907 6.0049E-05 0.16383 7.6219E-05 0.2929 0.00013627 465.23995691058656 33.488 2.737 33.488 32.188 34.925 0 197 78 3 0 0 0 0.64227 1 5863 5863 19.439 0.18201 1 7519200 9002 3452 5705 5709 9176 9176 -0.0016619051090174253 EALYLVRIRQ 10 Unmodified _EALYLVRIRQ_ 0 0 0 ENST00000448467.1_1_22:30939341-30940067:+|nuORF ENST00000448467.1_1_22:30939341-30940067:+|nuORF ENST00000448467.1_1_22:30939341-30940067:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7705688476562 2 630.874779 1259.73501 NaN NaN NaN NaN NaN NaN NaN 56.835 1 53.645 53.145 54.145 -3.1895 0 0 0 0.22588 1 10542 10542 3.5965 0 1 9003 9956 5706 5710 9177 9177 0.11552743105471563 EAMCNQIN 8 Unmodified _EAMCNQIN_ 0 0 0 REV__ENSG00000189376|ENST00000276704|C8orf76 REV__ENSG00000189376|ENST00000276704|C8orf76 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.54449462890625 2 461.691495 921.368437 NaN NaN NaN NaN NaN NaN NaN 66.602 1 63.493 62.993 63.993 -3.1086 0 0 0 0.21452 1 12909 12909 13.508 0.97634 1 + 9004 19207 5707 5711 9178 9178 -0.0953924405386033 EAMFLRRR 8 Unmodified _EAMFLRRR_ 0 0 0 nc|ENSG00000126254|Q9BTD8-4|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2018127441406 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 93.807 1 93.807 93.307 94.307 0 0 0 0 0.21486 1 18362 18362 6.7232 0.93973 1 9005 12308 5708 5712 9179 9179 0.05087733650748305 EAMIGNAPVDY 11 Unmodified _EAMIGNAPVDY_ 0 0 0 tr|U7SFU1|U7SFU1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02233PE=3SV=1 tr|U7SFU1|U7SFU1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02233PE=3SV=1 tr|U7SFU1|U7SFU1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02233PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.272216796875 2 590.271164 1178.52777 NaN NaN NaN NaN NaN NaN NaN 103.31 1 98.967 98.467 99.467 -4.346 0 0 0 0.21129 1 19785 19785 16.149 5.3252 1 9006 25890 5709 5713 9180 9180 -0.05434832224887032 EAMKIAEK 8 Unmodified _EAMKIAEK_ 0 0 0 tr|U7T2E2|U7T2E2_FUSNUD-alanine--D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ddlPE=3SV=1 tr|U7T2E2|U7T2E2_FUSNUD-alanine--D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ddlPE=3SV=1 tr|U7T2E2|U7T2E2_FUSNUD-alanine--D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ddlPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2486877441406 2 460.249503 918.484453 NaN NaN NaN NaN NaN NaN NaN 21.044 1 19.323 18.823 19.823 -1.7211 0 0 0 0.21486 1 3269 3269 4.756 0 1 9007 26358 5710 5714 9181 9181 0.02195022788487222 EAMLTIYQL 9 Unmodified _EAMLTIYQL_ 0 0 0 ENSG00000133636|ENST00000256010|NTS ENSG00000133636|ENST00000256010|NTS ENSG00000133636|ENST00000256010|NTS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.284912109375 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 67.589 1 64.481 63.981 64.981 -3.1086 0 0 0 0.20155 1 13110 13110 23.148 2.2772 1 9008 3810 5711 5715 9182 9182 0.015478476484986459 EAMNVLWV 8 Unmodified _EAMNVLWV_ 0 0 0 REV__ENST00000555867.1_1_14:73673029-73685994:+|nuORF REV__ENST00000555867.1_1_14:73673029-73685994:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24462890625 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 26.482 1 24.56 24.06 25.06 -1.9222 0 0 0 0.23025 1 4389 4389 1.7423 1.334 1 + 9009 14417 5712 5716 9183 9183 -0.007929598659302428 EAMRLIKEKR 10 Unmodified _EAMRLIKEKR_ 0 0 0 tr|U7SYB0|U7SYB0_FUSNUStressresponseproteinNST1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00952PE=4SV=1 tr|U7SYB0|U7SYB0_FUSNUStressresponseproteinNST1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00952PE=4SV=1 tr|U7SYB0|U7SYB0_FUSNUStressresponseproteinNST1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00952PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25262451171875 3 425.251818 1272.73363 NaN NaN NaN NaN NaN NaN NaN 23.341 1 23.341 22.841 23.841 0 0 0 0 0.22588 1 3980 3980 1.7423 0 1 9010 26276 5713 5717 9184 9184 0.10816785745032576 EAMSKVTAYS 10 Unmodified _EAMSKVTAYS_ 0 0 0 REV__ENST00000461428.1_1_22:39102134-39112093:+|nuORF REV__ENST00000461428.1_1_22:39102134-39112093:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7869262695312 2 543.760432 1085.50631 NaN NaN NaN NaN NaN NaN NaN 53.278 1 50.191 49.691 50.691 -3.0876 0 0 0 0.22323 1 9805 9805 24.021 2.2739 1 + 9011 14677 5714 5718 9185 9185 -0.03302217253599338 EAMTITWK 8 Unmodified _EAMTITWK_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26495361328125 2 490.249503 978.484453 0.29209 0.0001432 -0.50001 -0.00024513 -0.20792 -0.00010193 490.249246493796 74.583 0.69873 74.583 74.082 74.781 0 26 19 2 0 0 0 0.72428 1 14401 14401 10.824 1.4765 1 2542400 9012 5053;26536 5715 5719 9186 9186 -0.00564977211513451 EAMTSDGY 8 Unmodified _EAMTSDGY_ 0 0 0 ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4 ENSG00000183421|ENST00000332512|RIPK4 ENSG00000183421|ENST00000332512|RIPK4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21954345703125 2 437.168376 872.322198 NaN NaN NaN NaN NaN NaN NaN 49.129 1 46.248 45.748 46.748 -2.8811 0 0 0 0.21486 1 9304 9304 10.183 0 1 9013 6845 5716 5720 9187 9187 -0.11906985684311167 EAMWEDFITC 10 Unmodified _EAMWEDFITC_ 0 0 0 ENSG00000179988|ENST00000406217|PSTK;ENST00000493461.1_1_10:124742263-124743062:+|nuORF;nc|ENSG00000179988|Q8IV42-2|PSTK;nc|ENSG00000179988|Q8IV42|PSTK ENSG00000179988|ENST00000406217|PSTK ENSG00000179988|ENST00000406217|PSTK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7542114257812 2 622.75175 1243.48895 NaN NaN NaN NaN NaN NaN NaN 19.237 1 19.237 18.737 19.737 0 0 0 0 0.22588 1 3135 3135 3.5965 0 1 9014 6653 5717 5721 9188 9188 -0.12305880850908579 EAMWGPKLY 9 Unmodified _EAMWGPKLY_ 0 0 0 nc|ENSG00000137710|P35241-5|RDX;nc|ENSG00000137710|P35241-3|RDX;nc|ENSG00000137710|P35241-2|RDX nc|ENSG00000137710|P35241-5|RDX nc|ENSG00000137710|P35241-5|RDX MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.767822265625 2 547.770603 1093.52665 NaN NaN NaN NaN NaN NaN NaN 47.073 1 44.123 43.623 44.623 -2.9499 0 0 0 0.23508 1 8582 8582 7.9102 0.3012 1 9015 12348 5718 5722 9189 9189 -0.01637001803101157 EANGQEEND 9 Unmodified _EANGQEEND_ 0 0 0 ZEB2|p.F904Ifs*47|1|0.04|ENSG00000169554|chr2:144398477-144398478|-/CAAGGAT|frameshift_variant;nc|ENSG00000169554|O60315-2|ZEB2;ENSG00000169554|ENST00000627532|ZEB2 ZEB2|p.F904Ifs*47|1|0.04|ENSG00000169554|chr2:144398477-144398478|-/CAAGGAT|frameshift_variant ZEB2|p.F904Ifs*47|1|0.04|ENSG00000169554|chr2:144398477-144398478|-/CAAGGAT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 503.7824401855469 2 503.191425 1004.3683 0.27342 0.00013758 -0.38056 -0.0001915 -0.10714 -5.3913E-05 503.19062319959374 109.71 0.75688 109.71 109.33 110.09 0 38 21 2 0 0 0 0.59016 1 21603 21603 0.029283 0 1 3369800 9016 5988 5719 5723 9190 9190 -0.1337124924851878 EANHAMNYP 9 Unmodified _EANHAMNYP_ 0 0 0 REV__nc|ENSG00000175166|Q13200-2|PSMD2 REV__nc|ENSG00000175166|Q13200-2|PSMD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6881713867188 2 523.721641 1045.42873 NaN NaN NaN NaN NaN NaN NaN 62.615 1 59.654 59.154 60.154 -2.9614 0 0 0 0.23508 1 12083 12083 7.2892 1.5288 1 + 9017 18458 5720 5724 9191 9191 -0.0921681039910709 EANHRRQHR 9 Unmodified _EANHRRQHR_ 0 0 0 REV__ZNF24|p.L350I|1|0.42|ENSG00000172466|chr18:35337291-35337291|G/T|missense_variant REV__ZNF24|p.L350I|1|0.42|ENSG00000172466|chr18:35337291-35337291|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 401.86474609375 3 401.878254 1202.61293 NaN NaN NaN NaN NaN NaN NaN 19.448 1 19.448 18.948 19.948 0 0 0 0 0.23508 1 3179 3179 0.96228 0 1 + 9018 18287 5721 5725 9192 9192 0.019731388664467886 EANKNSSNSYY 11 Unmodified _EANKNSSNSYY_ 0 0 0 tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1 tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1 tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 427.2707214355469 3 426.186196 1275.53676 0.16041 6.8362E-05 -1.2418 -0.00052926 -1.0814 -0.0004609 426.1859770641361 36.751 0.4673 36.751 36.525 36.993 0 52 12 5 0 0 0 0.81736 1 6753 6753 1.3296 0 1 12993000 9019 26414 5722 5726 9193 9193 -0.08998767334855984 EANLFWILWR 10 Unmodified _EANLFWILWR_ 0 0 0 nc|ENSG00000173421|Q8IYA8-3|IHO1 nc|ENSG00000173421|Q8IYA8-3|IHO1 nc|ENSG00000173421|Q8IYA8-3|IHO1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.1558532714844 3 449.91179 1346.71354 NaN NaN NaN NaN NaN NaN NaN 17.902 1 16.591 16.091 17.091 -1.3109 0 0 0 0.22588 1 2890 2890 0.69767 0 1 9020 12468 5723 5727 9194 9194 0.054053580767231324 EANLFWILWR 10 Unmodified _EANLFWILWR_ 0 0 0 nc|ENSG00000173421|Q8IYA8-3|IHO1 nc|ENSG00000173421|Q8IYA8-3|IHO1 nc|ENSG00000173421|Q8IYA8-3|IHO1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.1145324707031 3 449.91179 1346.71354 NaN NaN NaN NaN NaN NaN NaN 26.47 1 24.835 24.335 25.335 -1.6347 0 0 0 0.22588 1 4393 4393 1.7423 0.14999 1 9021 12468 5723 5727 9195 9195 0.054053580767231324 EANLLPMKK 9 Unmodified _EANLLPMKK_ 0 0 0 GAS2|p.E38K|1|0.27|ENSG00000148935|chr11:22674981-22674981|G/A|missense_variant GAS2|p.E38K|1|0.27|ENSG00000148935|chr11:22674981-22674981|G/A|missense_variant GAS2|p.E38K|1|0.27|ENSG00000148935|chr11:22674981-22674981|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2592163085938 2 522.299527 1042.5845 NaN NaN NaN NaN NaN NaN NaN 27.023 1 25.101 24.601 25.601 -1.9222 0 0 0 0.23508 1 4497 4497 4.3292 0.38484 1 9022 11838 5724 5728 9196 9196 0.06491260122288622 EANNKRLSY 9 Unmodified _EANNKRLSY_ 0 0 0 tr|U7T586|U7T586_FUSNUDNApolymeraseIIIsubunitgamma/tauOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaXPE=3SV=1 tr|U7T586|U7T586_FUSNUDNApolymeraseIIIsubunitgamma/tauOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaXPE=3SV=1 tr|U7T586|U7T586_FUSNUDNApolymeraseIIIsubunitgamma/tauOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaXPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7833251953125 2 547.783087 1093.55162 0.35558 0.00019478 0.54575 0.00029895 0.90133 0.00049373 547.7830995644395 30.631 0.37399 30.631 30.451 30.825 0 16 10 2 0 0 0 0.67531 2 5492 5492;5536 7.9102 0.62092 1 772950 9023 26456 5725 5729 9197;9198 9197 0.008587693238041538 EANNLAAVA 9 Unmodified _EANNLAAVA_ 0 0 0 ENST00000477642.5_1_2:38525261-38527422:-|nuORF;ATL1|p.M371Wfs*29|1|0.04|ENSG00000198513|chr14:50623234-50623234|A/-|frameshift_variant;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;ATL1|p.A352T|1|0.16|ENSG00000198513|chr14:50623183-50623183|G/A|missense_variant ENST00000477642.5_1_2:38525261-38527422:-|nuORF ENST00000477642.5_1_2:38525261-38527422:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.229248046875 2 436.727249 871.439946 0.043693 1.9082E-05 0.032502 1.4195E-05 0.076196 3.3277E-05 436.72720218186726 59.185 0.49589 55.871 55.535 56.031 -3.3139 23 13 2 0 0 0 0.52396 1 10959 10959 18.146 0 1 1210100 9024 256 5726 5730 9199 9199 -0.0009166503334654408 EANPRETY 8 Unmodified _EANPRETY_ 0 0 0 REV__KIR2DL3|p.L336R|1|0.32|ENSG00000243772|chr19:54752500-54752500|T/G|missense_variant REV__KIR2DL3|p.L336R|1|0.32|ENSG00000243772|chr19:54752500-54752500|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2745056152344 2 490.227613 978.440674 0.31974 0.00015674 0.26696 0.00013087 0.58669 0.00028761 490.22760871623865 39.344 0.728 39.344 39.024 39.752 0 33 20 2 0 0 0 0.97966 1 7363 7363 16.942 2.104 1 3794000 + 9025 23719 5727 5731 9200 9200 -0.04940870384302798 EANQDLLRNS 10 Unmodified _EANQDLLRNS_ 0 0 0 TMEM132C|p.D986Mfs*13|1|0.27|ENSG00000181234|chr12:128705920-128705920|G/-|frameshift_variant;ENSG00000181234|ENST00000435159|TMEM132C TMEM132C|p.D986Mfs*13|1|0.27|ENSG00000181234|chr12:128705920-128705920|G/-|frameshift_variant TMEM132C|p.D986Mfs*13|1|0.27|ENSG00000181234|chr12:128705920-128705920|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 386.8855895996094 3 387.194915 1158.56291 -0.38469 -0.00014895 0.039444 1.5272E-05 -0.34525 -0.00013368 387.19508092263584 17.732 0.55661 16.421 16.239 16.795 -1.3109 43 15 4 0 0 0 1.1276 1 2919 2919 6.6304 0 1 11017000 9026 6716 5728 5732 9201 9201 -0.010024533727118978 EANQNDSVAF 10 Unmodified _EANQNDSVAF_ 0 0 0 nc|ENSG00000214189|Q6ZQV5|ZNF788P nc|ENSG00000214189|Q6ZQV5|ZNF788P nc|ENSG00000214189|Q6ZQV5|ZNF788P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7781982421875 2 547.741085 1093.46762 NaN NaN NaN NaN NaN NaN NaN 33.607 1 33.607 33.107 34.107 0 0 0 0 0.22588 1 6138 6138 10.074 0 1 9027 12591 5729 5733 9202 9202 -0.07537806563755112 EANREIEKY 9 Unmodified _EANREIEKY_ 0 0 0 ENSG00000088854|ENST00000252032|DNAAF9 ENSG00000088854|ENST00000252032|DNAAF9 ENSG00000088854|ENST00000252032|DNAAF9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3209228515625 2 576.288202 1150.56185 -0.39563 -0.000228 0.32297 0.00018612 -0.07266 -4.1873E-05 576.2886413587463 36.846 0.48634 34.378 34.153 34.639 -2.4688 29 13 3 0 0 0 0.68435 1 6839 6839 7.2892 1.5574 1 1703600 9028 1737 5730 5734 9203 9203 -0.007406677416156526 EANTMDSLVD 10 Unmodified _EANTMDSLVD_ 0 0 0 ENSG00000118507|ENST00000431975|AKAP7;AKAP7|p.I239*|1|0.37|ENSG00000118507|chr6:131219667-131219667|A/-|frameshift_variant;AKAP7|p.I239Nfs*4|1|0.17|ENSG00000118507|chr6:131219666-131219667|-/A|frameshift_variant;AKAP7|p.K79Rfs*21|1|0.73|ENSG00000118507|chr6:131160136-131160136|A/-|frameshift_variant ENSG00000118507|ENST00000431975|AKAP7 ENSG00000118507|ENST00000431975|AKAP7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7890014648438 2 547.737154 1093.45975 NaN NaN NaN NaN NaN NaN NaN 71.341 1 68.092 67.592 68.592 -3.2492 0 0 0 0.22588 1 13888 13888 5.7319 0.43497 1 9029 3040 5731 5735 9204 9204 -0.08323701875519873 EANVRHSPP 9 Unmodified _EANVRHSPP_ 0 0 0 REV__nc|ENSG00000008300|Q9NYQ7-2|CELSR3 REV__nc|ENSG00000008300|Q9NYQ7-2|CELSR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 504.12591552734375 2 503.756872 1005.49919 -0.19985 -0.00010068 0.75363 0.00037964 0.55377 0.00027897 503.75715935277196 17.814 0.34245 16.503 16.307 16.649 -1.3109 16 9 2 0 0 0 0.87888 1 2834 2834 4.756 4.756 1 483410 + 9030 23926 5732 5736 9205 9205 -0.0033376901915289636 EAPACGHH 8 Unmodified _EAPACGHH_ 0 0 0 ENST00000356317.7_1_12:51773482-51784642:-|nuORF;ENST00000543196.6_1_12:51773482-51777253:-|nuORF;ENST00000604847.5_1_12:51773482-51785195:-|nuORF ENST00000356317.7_1_12:51773482-51784642:-|nuORF ENST00000356317.7_1_12:51773482-51784642:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.11468505859375 2 411.171587 820.328621 NaN NaN NaN NaN NaN NaN NaN 17.87 1 16.598 16.098 17.098 -1.2722 0 0 0 0.21486 1 2654 2654 5.7604 0.52976 1 9031 8967 5733 5737 9206 9206 -0.08873002942266339 EAPATTAAAA 10 Unmodified _EAPATTAAAA_ 0 0 0 ENST00000604081.1_1_12:54388423-54388660:-|nuORF ENST00000604081.1_1_12:54388423-54388660:-|nuORF ENST00000604081.1_1_12:54388423-54388660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2196044921875 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 39.579 1 39.579 39.079 40.079 0 0 0 0 0.22588 1 7350 7350 9.3831 0 1 9032 11727 5734 5738 9207 9207 -0.017353712702515622 EAPAVTAGLK 10 Unmodified _EAPAVTAGLK_ 0 0 0 nc|ENSG00000102524|Q9Y275-3|TNFSF13B;TNFSF13B|p.F194Lfs*18|1|0.19|ENSG00000102524|chr13:108303348-108303348|T/-|frameshift_variant;nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B nc|ENSG00000102524|Q9Y275-3|TNFSF13B nc|ENSG00000102524|Q9Y275-3|TNFSF13B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7320556640625 2 478.7742 955.533846 0.80436 0.00038511 0.75535 0.00036164 1.5597 0.00074675 478.7744869325477 28.372 0.61977 26.416 26.053 26.672 -1.9561 29 17 2 0 0 0 0.88533 1 5056 5056 13.042 3.6593 1 1467100 9033 2132 5735 5739 9208 9208 0.0543005406894963 EAPEQLAVT 9 Unmodified _EAPEQLAVT_ 0 0 0 REV__tr|U7SRF2|U7SRF2_FUSNUProteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01579PE=4SV=1 REV__tr|U7SRF2|U7SRF2_FUSNUProteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01579PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7419128417969 2 479.248015 956.481476 0.073491 3.522E-05 -0.12244 -5.8679E-05 -0.04895 -2.3459E-05 479.2479088412116 39.461 1.3634 39.461 38.531 39.895 0 72 38 2 0 0 0 0.11171 1 7332 7332 49.933 6.0747 1 10122000 + 9034 25029 5736 5740 9209 9209 0.001494709353323742 EAPFLTTK 8 Unmodified _EAPFLTTK_ 0 0 0 REV__ENSG00000168631|ENST00000462446|MUCL3 REV__ENSG00000168631|ENST00000462446|MUCL3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7485656738281 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 35.854 1 35.854 35.354 36.354 0 0 0 0 0.21486 1 6595 6595 8.5933 0 1 + 9035 18041 5737 5741 9210 9210 0.02930980148892104 EAPGAVAGAA 10 Unmodified _EAPGAVAGAA_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3;ENST00000480209.1_1_7:44524201-44524862:-|nuORF ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.36572265625 1 813.410108 812.402832 0.54915 0.00044668 -0.086612 -7.0451E-05 0.46253 0.00037623 813.409975068708 32.916 0.73161 30.685 30.294 31.025 -2.2305 46 20 3 0 0 0 0.47611 1 5971 5971 6.6304 0.42459 1 5364100 9036 1115 5738 5742 9211 9211 -0.01087336579098519 EAPGPWWEA 9 Unmodified _EAPGPWWEA_ 0 0 0 REV__ENSG00000106948|ENST00000374088|AKNA REV__ENSG00000106948|ENST00000374088|AKNA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2804565429688 2 521.735074 1041.4556 -0.34231 -0.0001786 0.29723 0.00015507 -0.045084 -2.3522E-05 521.7350411213977 117.31 0.6962 112.7 112.51 113.21 -4.6074 31 19 2 0 0 0 0.65155 1 22523 22523 21.747 5.8995 1 1498300 + 9037 15070 5739 5743 9212 9212 -0.06347378516284152 EAPGVDRY 8 Unmodified _EAPGVDRY_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.2564392089844 2 453.719424 905.424296 0.49008 0.00022236 -0.29319 -0.00013303 0.19689 8.9333E-05 453.7192333727822 29.937 0.94596 27.863 27.345 28.291 -2.0743 45 26 2 0 0 0 0.73936 1 5192 5192 8.5933 2.8329 1 699830 9038 7385 5740 5744 9213 9213 -0.03219951550386213 EAPGVSRHLV 10 Unmodified _EAPGVSRHLV_ 0 0 0 ENSG00000164946|ENST00000380880|FREM1;FREM1|p.S839Lfs*8|1|0.23|ENSG00000164946|chr9:14819265-14819265|A/-|frameshift_variant;FREM1|p.S1085Afs*5|1|0.39|ENSG00000164946|chr9:14806682-14806682|T/-|frameshift_variant;FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.263916015625 2 532.795998 1063.57744 -0.1352 -7.2032E-05 0.092011 4.9023E-05 -0.043186 -2.3009E-05 532.7960184934816 52.908 0.72567 50.024 49.625 50.35 -2.8837 47 20 3 0 0 0 0.86856 1 10132 10132 11.495 0 1 6927400 9039 5580 5741 5745 9214 9214 0.048196635660815446 EAPGVSRHLV 10 Unmodified _EAPGVSRHLV_ 0 0 0 ENSG00000164946|ENST00000380880|FREM1;FREM1|p.S839Lfs*8|1|0.23|ENSG00000164946|chr9:14819265-14819265|A/-|frameshift_variant;FREM1|p.S1085Afs*5|1|0.39|ENSG00000164946|chr9:14806682-14806682|T/-|frameshift_variant;FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2644653320312 2 532.795998 1063.57744 0.44401 0.00023657 -0.42406 -0.00022593 0.019957 1.0633E-05 532.7957276994473 53.194 0.73886 50.107 49.689 50.428 -3.0876 55 20 3 0 0 0 0.83271 1 9831 9831 21.537 12.792 1 7245600 9040 5580 5741 5745 9215 9215 0.048196635660815446 EAPIPGLQLLT 11 Unmodified _EAPIPGLQLLT_ 0 0 0 REV__nc|ENSG00000165555|Q6NXP6-2|NOXRED1 REV__nc|ENSG00000165555|Q6NXP6-2|NOXRED1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3359985351562 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 59.456 1 59.456 58.956 59.956 0 0 0 0 0.23324 1 11391 11391 5.7319 0.43497 1 + 9041 17781 5742 5746 9216 9216 0.09047140854386271 EAPKYIEH 8 Unmodified _EAPKYIEH_ 0 0 0 PDK2|p.G15E|1|0.78|ENSG00000005882|chr17:50095479-50095479|G/A|missense_variant PDK2|p.G15E|1|0.78|ENSG00000005882|chr17:50095479-50095479|G/A|missense_variant PDK2|p.G15E|1|0.78|ENSG00000005882|chr17:50095479-50095479|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 330.0126037597656 3 329.502908 985.486896 0.34387 0.00011331 -0.27507 -9.0638E-05 0.068799 2.2669E-05 329.50267281666214 30 0.42276 28.107 27.856 28.279 -1.8928 22 11 3 0 0 0 1.0265 1 5094 5094 0.40072 0 1 762940 9042 12769 5743 5747 9217 9217 -0.006428054822094964 EAPLEGNRMY 10 Unmodified _EAPLEGNRMY_ 0 0 0 REV__USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant REV__USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2766723632812 2 590.27678 1178.53901 NaN NaN NaN NaN NaN NaN NaN 45.052 1 45.052 44.552 45.552 0 0 0 0 0.22588 1 8460 8460 3.9444 0 1 + 9043 15779 5744 5748 9218 9218 -0.043120101307295045 EAPLEGPLGP 10 Unmodified _EAPLEGPLGP_ 0 0 0 ENSG00000092445|ENST00000263798|TYRO3 ENSG00000092445|ENST00000263798|TYRO3 ENSG00000092445|ENST00000263798|TYRO3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2584228515625 2 490.258382 978.502212 0.14639 7.1771E-05 0.074131 3.6343E-05 0.22052 0.00010811 490.2583593057579 38.477 0.49027 36.035 35.704 36.195 -2.4419 25 13 3 0 0 0 0.51311 1 6879 6879 1.9275 0.96523 1 2587100 9044 1836 5745 5749 9219 9219 0.012100613149982564 EAPLESFY 8 Unmodified _EAPLESFY_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENST00000463054.1_1_13:96529939-96547453:-|nuORF ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72442626953125 2 478.224008 954.433463 -0.039277 -1.8783E-05 4.1128 0.0019668 4.0735 0.001948 478.2274929316342 29.161 0.87132 29.161 28.738 29.61 0 33 24 2 0 0 0 0.64227 1 5289 5289 19.439 4.8573 1 2441100 9045 2139 5746 5750 9220 9220 -0.04557602984709774 EAPLIVAARF 10 Unmodified _EAPLIVAARF_ 0 0 0 ENST00000511885.6_1_4:2230963-2243443:-|nuORF;ENST00000506763.5_1_4:2242801-2243443:-|nuORF ENST00000511885.6_1_4:2230963-2243443:-|nuORF ENST00000511885.6_1_4:2230963-2243443:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7759399414062 2 543.818941 1085.62333 NaN NaN NaN NaN NaN NaN NaN 71.14 1 67.673 67.173 68.173 -3.467 0 0 0 0.22588 1 13479 13479 6.7232 1.9672 1 9046 10685 5747 5751 9221 9221 0.08394308748302137 EAPLLKYK 8 Unmodified _EAPLLKYK_ 0 0 0 DNAH5|p.P3316Lfs*22|3|0.33|ENSG00000039139|chr5:13766130-13766130|G/-|frameshift_variant;DNAH5|p.I4068*|1|0.07|ENSG00000039139|chr5:13721077-13721077|T/-|frameshift_variant;DNAH5|p.F4486Lfs*7|2|0.23|ENSG00000039139|chr5:13701317-13701317|A/-|frameshift_variant;ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.I1855Sfs*16|1|0.33|ENSG00000039139|chr5:13841052-13841052|T/-|frameshift_variant;DNAH5|p.G1976Efs*78|3|0.44|ENSG00000039139|chr5:13830731-13830731|C/-|frameshift_variant;DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant DNAH5|p.P3316Lfs*22|3|0.33|ENSG00000039139|chr5:13766130-13766130|G/-|frameshift_variant DNAH5|p.P3316Lfs*22|3|0.33|ENSG00000039139|chr5:13766130-13766130|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2549743652344 2 481.289485 960.564418 NaN NaN NaN NaN NaN NaN NaN 18.625 1 18.625 18.125 19.125 0 0 0 0 0.21486 1 3007 3007 5.2307 0 1 9047 864 5748 5752 9222 9222 0.08255832453983203 EAPLSWVN 8 Unmodified _EAPLSWVN_ 0 0 0 REV__ENST00000389120.7_1_9:104303128-104303197:+|nuORF REV__ENST00000389120.7_1_9:104303128-104303197:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2326354980469 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 37.138 1 34.801 34.301 35.301 -2.3375 0 0 0 0.23538 1 6565 6565 0.25148 0.12366 1 + 9048 21191 5749 5753 9223 9223 -0.010864770279567892 EAPPAQPPP 9 Unmodified _EAPPAQPPP_ 0 0 0 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75518798828125 2 452.232168 902.449782 -0.033561 -1.5177E-05 1.5236 0.00068904 1.4901 0.00067387 452.2338310665411 48.469 1.1213 45.495 44.867 45.988 -2.9742 79 31 4 0 0 0 0.62102 1 8825 8825 11.64 0 1 2338100 9049 6744 5750 5754 9224 9224 -0.005344770279521072 EAPPAQPPP 9 Unmodified _EAPPAQPPP_ 0 0 0 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 452.232168 902.449782 0.55881 0.00025271 1.0169 0.00045986 1.5757 0.00071257 452.23362007830025 45.511 1.184 45.511 44.955 46.139 0 -0.018557 -0.00049593 NaN 11.64 73 33 4 NaN NaN NaN NaN 0 NaN NaN 0 2566200 9050 6744 5750 5754 -0.005344770279521072 EAPPAQPPP 9 Unmodified _EAPPAQPPP_ 0 0 0 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 452.232168 902.449782 -0.1902 -8.6012E-05 1.7634 0.00079748 1.5732 0.00071147 452.2339577195912 48.423 1.1988 45.554 44.842 46.041 -2.869 0.024618 0.00017932 NaN 11.64 82 33 4 NaN NaN NaN NaN 0 NaN NaN 0 3339700 9051 6744 5750 5754 -0.005344770279521072 EAPPAQPPP 9 Unmodified _EAPPAQPPP_ 0 0 0 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 452.232168 902.449782 -0.13511 -6.11E-05 1.877 0.00084884 1.7419 0.00078774 452.2338175506351 48.507 1.4542 45.557 44.638 46.092 -2.9499 0.028211 0.00028203 NaN 11.64 80 41 3 NaN NaN NaN NaN 0 NaN NaN 0 2405900 9052 6744 5750 5754 -0.005344770279521072 EAPPEGEQSP 10 Unmodified _EAPPEGEQSP_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 521.1463012695312 2 520.730186 1039.44582 0.24999 0.00013017 -0.20678 -0.00010768 0.043204 2.2497E-05 520.7300479534996 36.34 0.70785 36.34 36.035 36.743 0 30 19 2 0 0 0 0.91149 1 6769 6769 3.5965 0.60125 1 3107600 + 9053 19549 5751 5755 9225 9225 -0.07232611312315385 EAPPMVMKY 9 Unmodified _EAPPMVMKY_ 0 0 0 REV__SPAG17|p.T1274M|1|0.3|ENSG00000155761|chr1:118025326-118025326|G/A|missense_variant REV__SPAG17|p.T1274M|1|0.3|ENSG00000155761|chr1:118025326-118025326|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2777709960938 2 533.259013 1064.50347 NaN NaN NaN NaN NaN NaN NaN 28.35 1 26.394 25.894 26.894 -1.9561 0 0 0 0.23508 1 5068 5068 7.9102 0.62092 1 + 9054 24726 5752 5756 9226 9226 -0.02619763912093731 EAPPMVMKY 9 Unmodified _EAPPMVMKY_ 0 0 0 REV__SPAG17|p.T1274M|1|0.3|ENSG00000155761|chr1:118025326-118025326|G/A|missense_variant REV__SPAG17|p.T1274M|1|0.3|ENSG00000155761|chr1:118025326-118025326|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2688598632812 2 533.259013 1064.50347 NaN NaN NaN NaN NaN NaN NaN 31.102 1 28.954 28.454 29.454 -2.1483 0 0 0 0.23508 1 5347 5347 11.64 0 1 + 9055 24726 5752 5756 9227 9227 -0.02619763912093731 EAPPPPPPP 9 Unmodified _EAPPPPPPP_ 0 0 0 REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant;REV__nc|ENSG00000095539|Q9NTN9|SEMA4G REV__TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.35333251953125 2 449.737086 897.459619 0.38106 0.00017138 -0.76723 -0.00034505 -0.38617 -0.00017368 449.7368676168446 39.946 2.3174 39.946 39.095 41.412 0 109 65 2 0 0 0 0.72864 1 7515 7515 23.148 0 1 2122600 9056 15574;14610 5753 5757 9228 9228 0.006787109774222699 EAPQKEMF 8 Unmodified _EAPQKEMF_ 0 0 0 ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2764587402344 2 490.23131 978.448068 NaN NaN NaN NaN NaN NaN NaN 92.352 1 88.544 88.044 89.044 -3.8083 0 0 0 0.21323 1 17696 17696 14.582 2.0501 1 9057 6446 5754 5758 9229 9229 -0.0420185410821432 EAPQSALRSQ 10 Unmodified _EAPQSALRSQ_ 0 0 0 nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP nc|ENSG00000100106|Q9H2D6-6|TRIOBP nc|ENSG00000100106|Q9H2D6-6|TRIOBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.780517578125 2 543.780544 1085.54654 0.28963 0.00015749 0.73426 0.00039927 1.0239 0.00055677 543.7810867059407 18.9 0.17301 18.9 18.788 18.961 0 6 4 2 0 0 0 0.73527 1 3065 3065 7.609 1.4032 1 349690 9058 1930 5755 5759 9230 9230 0.0071846546118194965 EAPQSRVS 8 Unmodified _EAPQSRVS_ 0 0 0 REV__ENST00000377182.4_1_9:72723208-72723295:+|nuORF REV__ENST00000377182.4_1_9:72723208-72723295:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2248840332031 2 437.224874 872.435195 0.19961 8.7275E-05 -0.13995 -6.1188E-05 0.059664 2.6087E-05 437.224781758843 24.241 0.40427 24.241 23.933 24.337 0 19 11 2 0 0 0 0.70613 1 4174 4174 13.508 2.684 1 1306000 + 9059 21091 5756 5760 9231 9231 -0.006125491760940349 EAPQSRVS 8 Unmodified _EAPQSRVS_ 0 0 0 REV__ENST00000377182.4_1_9:72723208-72723295:+|nuORF REV__ENST00000377182.4_1_9:72723208-72723295:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2251892089844 2 437.224874 872.435195 NaN NaN NaN NaN NaN NaN NaN 25.652 1 24.004 23.504 24.504 -1.6482 0 0 0 0.21452 1 4503 4503 13.508 2.684 1 + 9060 21091 5756 5760 9232 9232 -0.006125491760940349 EAPREAMC 8 Unmodified _EAPREAMC_ 0 0 0 REV__ENST00000528694.1_1_11:830558-830714:+|nuORF REV__ENST00000528694.1_1_11:830558-830714:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7638244628906 2 453.694038 905.373522 NaN NaN NaN NaN NaN NaN NaN 55.417 1 55.417 54.917 55.917 0 0 0 0 0.21452 1 10580 10580 13.508 7.7475 1 + 9061 22713 5757 5761 9233 9233 -0.08294940191251499 EAPRESTTGF 10 Unmodified _EAPRESTTGF_ 0 0 0 REV__ZNF436|p.Q213Pfs*14|1|0.33|ENSG00000125945|chr1:23362744-23362745|-/GATG|frameshift_variant REV__ZNF436|p.Q213Pfs*14|1|0.33|ENSG00000125945|chr1:23362744-23362745|-/GATG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7740478515625 2 547.759278 1093.504 NaN NaN NaN NaN NaN NaN NaN 89.317 1 89.317 88.817 89.817 0 0 0 0 0.22588 1 17441 17441 10.824 2.9138 1 + 9062 15844 5758 5762 9234 9234 -0.03900929667042874 EAPRGGRRRQP 11 Unmodified _EAPRGGRRRQP_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.13726806640625 3 427.241193 1278.70175 0.078873 3.3698E-05 -0.82297 -0.00035161 -0.7441 -0.00031791 427.24079529352787 25.925 0.24602 24.29 24.162 24.408 -1.6347 13 6 3 0 0 0 0.96218 1 4257 4257 1.2148 0.10508 1 576600 9063 1695 5759 5763 9235 9235 0.07354554106132127 EAPRGGRRRQP 11 Unmodified _EAPRGGRRRQP_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 427.241193 1278.70175 0.98697 0.00042168 -2.0485 -0.00087519 -1.0615 -0.00045352 427.240414463446 26.149 0.3057 24.367 24.177 24.483 -1.7821 0.03719 -0.0011856 NaN 1.2148 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 476880 9064 1695 5759 5763 0.07354554106132127 EAPRGGRRRQP 11 Unmodified _EAPRGGRRRQP_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 427.241193 1278.70175 -0.26473 -0.00011311 -0.84768 -0.00036216 -1.1124 -0.00047527 427.2408938429981 26.254 0.28081 24.332 24.122 24.402 -1.9222 0.0024294 0.00035345 NaN 1.2148 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 399820 9065 1695 5759 5763 0.07354554106132127 EAPRIDGAQ 9 Unmodified _EAPRIDGAQ_ 0 0 0 REV__ENSG00000103740|ENST00000258873|ACSBG1 REV__ENSG00000103740|ENST00000258873|ACSBG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.743408203125 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 29.953 1 29.953 29.453 30.453 0 0 0 0 0.19006 1 5371 5371 24.991 0.97039 1 + 9066 14898 5760 5764 9236 9236 -0.007208776303286868 EAPRPEEE 8 Unmodified _EAPRPEEE_ 0 0 0 nc|ENSG00000074855|Q9HCE9-2|ANO8;ENSG00000074855|ENST00000159087|ANO8;ENST00000597643.5_1_19:17434328-17439993:-|nuORF nc|ENSG00000074855|Q9HCE9-2|ANO8 nc|ENSG00000074855|Q9HCE9-2|ANO8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72088623046875 2 478.719621 955.42469 NaN NaN NaN NaN NaN NaN NaN 27.879 1 25.882 25.382 26.382 -1.9962 0 0 0 0.21039 1 4681 4681 16.942 1.0951 1 9067 1505 5761 5765 9237 9237 -0.05480576621187083 EAPRPVWPD 9 Unmodified _EAPRPVWPD_ 0 0 0 ZNF831|p.D1025Tfs*40|6|0.36|ENSG00000124203|chr20:59194085-59194085|G/-|frameshift_variant;ENSG00000124203|ENST00000371030|ZNF831 ZNF831|p.D1025Tfs*40|6|0.36|ENSG00000124203|chr20:59194085-59194085|G/-|frameshift_variant ZNF831|p.D1025Tfs*40|6|0.36|ENSG00000124203|chr20:59194085-59194085|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.262451171875 2 533.769448 1065.52434 0.69649 0.00037176 0.61308 0.00032724 1.3096 0.00069901 533.7695680341016 30.028 0.21005 28.135 27.961 28.171 -1.8928 7 5 2 0 0 0 0.80521 1 5129 5129 10.824 8.2464 1 224800 9068 3300 5762 5766 9238 9238 -0.005797142165647529 EAPRTELP 8 Unmodified _EAPRTELP_ 0 0 0 REV__ENSG00000135631|ENST00000486777|RAB11FIP5 REV__ENSG00000135631|ENST00000486777|RAB11FIP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23394775390625 2 456.742899 911.471246 0.31788 0.00014519 -0.3864 -0.00017648 -0.068518 -3.1295E-05 456.7427911843601 30.68 2.458 28.563 27.701 30.159 -2.1167 219 69 5 0 0 0 0.68128 1 5617 5617 16.942 1.0951 1 172310000 + 9069 16282 5763 5767 9239 9239 0.011969080007474986 EAPRTELP 8 Unmodified _EAPRTELP_ 0 0 0 REV__ENSG00000135631|ENST00000486777|RAB11FIP5 REV__ENSG00000135631|ENST00000486777|RAB11FIP5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 456.742899 911.471246 0.30879 0.00014104 -0.34727 -0.00015861 -0.038476 -1.7574E-05 456.7427779613283 28.9 3.1388 28.9 28.006 31.144 0 0.2202 1.1671E-05 NaN 16.942 211 89 3 NaN NaN NaN NaN 0 NaN NaN 0 265260000 + 9070 16282 5763 5767 0.011969080007474986 EAPRTELP 8 Unmodified _EAPRTELP_ 0 0 0 REV__ENSG00000135631|ENST00000486777|RAB11FIP5 REV__ENSG00000135631|ENST00000486777|RAB11FIP5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 456.742899 911.471246 0.26775 0.00012229 -0.22242 -0.00010159 0.04533 2.0704E-05 456.742813622044 30.537 3.7227 28.644 27.819 31.542 -1.8928 -0.035824 0.00012572 NaN 16.942 222 105 3 NaN NaN NaN NaN 0 NaN NaN 0 155170000 + 9071 16282 5763 5767 0.011969080007474986 EAPRTELP 8 Unmodified _EAPRTELP_ 0 0 0 REV__ENSG00000135631|ENST00000486777|RAB11FIP5 REV__ENSG00000135631|ENST00000486777|RAB11FIP5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 456.742899 911.471246 0.51088 0.00023334 -0.57272 -0.00026159 -0.061847 -2.8248E-05 456.742657408418 30.686 3.5295 28.612 27.76 31.289 -2.0743 -0.067728 -0.00019428 NaN 16.942 226 100 3 NaN NaN NaN NaN 0 NaN NaN 0 120630000 + 9072 16282 5763 5767 0.011969080007474986 EAPSEDLL 8 Unmodified _EAPSEDLL_ 0 0 0 SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant;SLX4|p.P1414Hfs*36|1|0.43|ENSG00000188827|chr16:3589397-3589397|G/-|frameshift_variant;nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4 SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21533203125 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 140.91 1 135.92 135.42 136.42 -4.9877 0 0 0 0.21323 1 27126 27126 14.582 0 1 9073 7201 5764 5768 9240 9240 -0.028581933643749835 EAPSGDPYS 9 Unmodified _EAPSGDPYS_ 0 0 0 REV__ENSG00000160111|ENST00000443236|CPAMD8 REV__ENSG00000160111|ENST00000443236|CPAMD8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5224304199219 2 461.693072 921.371591 -0.28674 -0.00013238 0.67918 0.00031357 0.39244 0.00018119 461.6933720720049 53.012 1.1461 50.128 49.657 50.803 -2.8837 66 32 3 0 0 0 0.8319 1 10037 10037 12.532 2.3482 1 2776900 + 9074 17394 5765 5769 9241 9241 -0.0922395440385344 EAPSGWRL 8 Unmodified _EAPSGWRL_ 0 0 0 ENST00000493582.5_1_2:240274529-240323149:-|nuORF ENST00000493582.5_1_2:240274529-240323149:-|nuORF ENST00000493582.5_1_2:240274529-240323149:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23846435546875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 64.028 1 64.028 63.528 64.528 0 0 0 0 0.2074 1 12321 12321 19.439 5.9311 1 9075 10548 5766 5770 9242 9242 0.00036345066178000707 EAPSGWRL 8 Unmodified _EAPSGWRL_ 0 0 0 ENST00000493582.5_1_2:240274529-240323149:-|nuORF ENST00000493582.5_1_2:240274529-240323149:-|nuORF ENST00000493582.5_1_2:240274529-240323149:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23797607421875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 67.544 1 64.217 63.717 64.717 -3.3268 0 0 0 0.21452 1 12737 12737 13.508 0.97634 1 9076 10548 5766 5770 9243 9243 0.00036345066178000707 EAPSHQSSH 9 Unmodified _EAPSHQSSH_ 0 0 0 ENST00000538212.6_1_7:144345963-144421230:-|nuORF ENST00000538212.6_1_7:144345963-144421230:-|nuORF ENST00000538212.6_1_7:144345963-144421230:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2646484375 2 490.215037 978.415522 NaN NaN NaN NaN NaN NaN NaN 27.795 1 26.04 25.54 26.54 -1.7552 0 0 0 0.22621 1 4667 4667 15.847 2.3393 1 9077 11047 5767 5771 9244 9244 -0.07454925186857508 EAPSRAPAEGP 11 Unmodified _EAPSRAPAEGP_ 0 0 0 ENST00000494080.5_1_11:64109091-64110096:+|nuORF;CCDC88B|p.W639Gfs*3|1|0.52|ENSG00000168071|chr11:64344456-64344456|T/-|frameshift_variant;nc|ENSG00000168071|A6NC98-2|CCDC88B;ENST00000463837.5_1_11:64107738-64120281:+|nuORF;nc|ENSG00000168071|A6NC98-4|CCDC88B;ENSG00000168071|ENST00000356786|CCDC88B ENST00000494080.5_1_11:64109091-64110096:+|nuORF ENST00000494080.5_1_11:64109091-64110096:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2662353515625 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 110.98 1 106.49 105.99 106.99 -4.4915 0 0 0 0.091531 1 21302 21302 1.4074 0 1 9078 426 5768 5772 9245 9245 -0.017052234301445424 EAPSRAPAEGP 11 Unmodified _EAPSRAPAEGP_ 0 0 0 ENST00000494080.5_1_11:64109091-64110096:+|nuORF;CCDC88B|p.W639Gfs*3|1|0.52|ENSG00000168071|chr11:64344456-64344456|T/-|frameshift_variant;nc|ENSG00000168071|A6NC98-2|CCDC88B;ENST00000463837.5_1_11:64107738-64120281:+|nuORF;nc|ENSG00000168071|A6NC98-4|CCDC88B;ENSG00000168071|ENST00000356786|CCDC88B ENST00000494080.5_1_11:64109091-64110096:+|nuORF ENST00000494080.5_1_11:64109091-64110096:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2662353515625 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 111.01 1 106.52 106.02 107.02 -4.4915 0 0 0 0.17845 1 21306 21306 23.79 0.64136 1 9079 426 5768 5772 9246 9246 -0.017052234301445424 EAPSTQAAV 9 Unmodified _EAPSTQAAV_ 0 0 0 ENST00000302392.4_1_3:44906560-44906683:+|nuORF ENST00000302392.4_1_3:44906560-44906683:+|nuORF ENST00000302392.4_1_3:44906560-44906683:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2192687988281 2 437.219257 872.423961 0.10578 4.6249E-05 -0.085915 -3.7564E-05 0.019865 8.6852E-06 437.21922158631816 35.655 1.2131 33.402 33.09 34.303 -2.2527 74 34 3 0 0 0 0.40602 1 6400 6400 25.399 3.6527 1 3794300 9080 8572 5769 5773 9247 9247 -0.017353712702515622 EAPTSTKVF 9 Unmodified _EAPTSTKVF_ 0 0 0 REV__ENSG00000168016|ENST00000645898|TRANK1 REV__ENSG00000168016|ENST00000645898|TRANK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2593078613281 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 25.361 1 23.713 23.213 24.213 -1.6482 0 0 0 0.19684 1 4447 4447 0.37959 0.25177 1 + 9081 17989 5770 5774 9248 9248 0.012100613149982564 EAPVHWTLQET 11 Unmodified _EAPVHWTLQET_ 0 0 0 nc|ENSG00000100987|Q9NZR4-7|VSX1 nc|ENSG00000100987|Q9NZR4-7|VSX1 nc|ENSG00000100987|Q9NZR4-7|VSX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.217529296875 3 437.550698 1309.63027 -0.12381 -5.4172E-05 0.12534 5.4843E-05 0.0015329 6.7071E-07 437.5506654049202 41.475 1.2708 38.986 38.386 39.657 -2.4896 31 14 3 0 0 0 0.79428 1 7452 7452 4.4062 1.0865 1 1964400 9082 12259 5771 5775 9249 9249 -0.012164231617589394 EAQAHFGR 8 Unmodified _EAQAHFGR_ 0 0 0 nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1;nc|ENSG00000160688|Q8NFF5-4|FLAD1;nc|ENSG00000160688|Q8NFF5-5|FLAD1;ENST00000489992.5_1_1:154961096-154965253:+|nuORF nc|ENSG00000160688|Q8NFF5-3|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.229736328125 2 458.225208 914.435863 -0.11153 -5.1107E-05 -1.1302 -0.00051786 -1.2417 -0.00056897 458.22479740334745 41.964 0.56429 39.313 38.9 39.464 -2.651 27 15 2 0 0 0 8448 1 7477 7477 0.68139 0.27313 1 734300 9083 5260 5772 5776 9250 9250 -0.024777097363880785 EAQAHLKY 8 Unmodified _EAQAHLKY_ 0 0 0 REV__nc|ENSG00000162520|Q9H7C4-2|SYNC REV__nc|ENSG00000162520|Q9H7C4-2|SYNC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24285888671875 2 480.250892 958.48723 -0.32752 -0.00015729 0.3194 0.00015339 -0.0081217 -3.9004E-06 480.25116058977056 58.688 0.89688 58.688 58.279 59.176 0 59 25 3 0 0 0 0.71876 1 11186 11186 11.64 1.5664 1 4176100 + 9084 17504 5773 5777 9251 9251 0.006326142376565258 EAQAPDQI 8 Unmodified _EAQAPDQI_ 0 0 0 REV__ENSG00000103275|ENST00000397514|UBE2I REV__ENSG00000103275|ENST00000397514|UBE2I MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22113037109375 2 436.211432 870.408311 0.30294 0.00013215 -0.096483 -4.2087E-05 0.20646 9.006E-05 436.21139765912926 30.643 1.0226 28.526 28.011 29.033 -2.1167 62 28 3 0 0 0 0.74818 1 5568 5568 7.2892 0 1 1320500 + 9085 14873 5774 5778 9252 9252 -0.03207657787288554 EAQAPMST 8 Unmodified _EAQAPMST_ 0 0 0 ENST00000599156.5_1_19:19033185-19035061:+|nuORF ENST00000599156.5_1_19:19033185-19035061:+|nuORF ENST00000599156.5_1_19:19033185-19035061:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 417.2220458984375 2 417.686736 833.358918 0.23011 9.6112E-05 0.63935 0.00026705 0.86946 0.00036316 417.68704917058 66.181 0.55842 62.685 62.381 62.939 -3.4965 24 15 2 0 0 0 0.77935 1 12418 12418 5.2307 2.3415 1 1325800 9086 11690 5775 5779 9253 9253 -0.06442689067728224 EAQAPMST 8 Unmodified _EAQAPMST_ 0 0 0 ENST00000599156.5_1_19:19033185-19035061:+|nuORF ENST00000599156.5_1_19:19033185-19035061:+|nuORF ENST00000599156.5_1_19:19033185-19035061:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 417.686736 833.358918 -0.16346 -6.8274E-05 1.1531 0.00048164 0.98966 0.00041337 417.6871689001057 65.74 0.5407 62.693 62.478 63.019 -3.047 0.012204 0.00015469 NaN 5.2307 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1479200 9087 11690 5775 5779 -0.06442689067728224 EAQAPMST 8 Unmodified _EAQAPMST_ 0 0 0 ENST00000599156.5_1_19:19033185-19035061:+|nuORF ENST00000599156.5_1_19:19033185-19035061:+|nuORF ENST00000599156.5_1_19:19033185-19035061:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 417.686736 833.358918 -0.036173 -1.5109E-05 0.87698 0.0003663 0.8408 0.00035119 417.6870870825896 65.951 0.627 62.668 62.441 63.068 -3.2832 -0.012633 -7.5998E-05 NaN 5.2307 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2022400 9088 11690 5775 5779 -0.06442689067728224 EAQAVSLN 8 Unmodified _EAQAVSLN_ 0 0 0 REV__ENST00000494129.1_1_2:192246088-192252282:+|nuORF REV__ENST00000494129.1_1_2:192246088-192252282:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 416.2125244140625 2 416.213975 830.413397 -0.40414 -0.00016821 -0.03283 -1.3664E-05 -0.43697 -0.00018187 416.21385348304284 54.008 0.89391 50.87 50.06 50.954 -3.1377 35 25 2 0 0 0 0.58432 1 9857 9857 23.148 2.6948 1 1997900 + 9089 22360 5776 5780 9254 9254 -0.008593539246703585 EAQAVSLN 8 Unmodified _EAQAVSLN_ 0 0 0 REV__ENST00000494129.1_1_2:192246088-192252282:+|nuORF REV__ENST00000494129.1_1_2:192246088-192252282:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 416.213975 830.413397 0.20507 8.5353E-05 -0.49455 -0.00020584 -0.28949 -0.00012049 416.2136880043292 50.94 0.52631 50.94 50.604 51.131 0 0.08785 -0.00037872 NaN 23.148 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1888300 + 9090 22360 5776 5780 -0.008593539246703585 EAQAVSLN 8 Unmodified _EAQAVSLN_ 0 0 0 REV__ENST00000494129.1_1_2:192246088-192252282:+|nuORF REV__ENST00000494129.1_1_2:192246088-192252282:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 416.213975 830.413397 -0.38715 -0.00016114 0.34106 0.00014195 -0.046085 -1.9181E-05 416.2139886695523 53.627 1.2214 50.743 49.791 51.013 -2.8837 -0.10905 0.00031688 NaN 23.148 47 34 2 NaN NaN NaN NaN 0 NaN NaN 0 2119900 + 9091 22360 5776 5780 -0.008593539246703585 EAQAVSLN 8 Unmodified _EAQAVSLN_ 0 0 0 REV__ENST00000494129.1_1_2:192246088-192252282:+|nuORF REV__ENST00000494129.1_1_2:192246088-192252282:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 416.213975 830.413397 0.030554 1.2717E-05 -0.00192 -7.9914E-07 0.028634 1.1918E-05 416.2139505468415 53.991 0.70116 50.856 50.274 50.975 -3.1352 0.0032145 3.1368E-05 NaN 23.148 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2249100 + 9092 22360 5776 5780 -0.008593539246703585 EAQAVSLN 8 Unmodified _EAQAVSLN_ 0 0 0 REV__ENST00000494129.1_1_2:192246088-192252282:+|nuORF REV__ENST00000494129.1_1_2:192246088-192252282:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 416.213975 830.413397 -0.40414 -0.00016821 -0.03283 -1.3664E-05 -0.43697 -0.00018187 416.21385348304284 54.008 0.89391 50.87 50.06 50.954 -3.1377 0.017989 5.6379E-06 NaN 23.148 35 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1997900 + 9093 22360 5776 5780 -0.008593539246703585 EAQCGVLLP 9 Unmodified _EAQCGVLLP_ 0 0 0 REV__ENST00000609742.2_1_10:33177235-33177406:-|nuORF REV__ENST00000609742.2_1_10:33177235-33177406:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24261474609375 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 34.526 1 32.209 31.709 32.709 -2.3175 0 0 0 0.19679 1 6342 6342 0.12781 0 1 + 9094 23487 5777 5781 9255 9255 0.001707362714341798 EAQCGYHGASP 11 Unmodified _EAQCGYHGASP_ 0 0 0 nc|ENSG00000177943|Q6UXC1-3|MAMDC4;ENSG00000177943|ENST00000317446|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4 nc|ENSG00000177943|Q6UXC1-3|MAMDC4 nc|ENSG00000177943|Q6UXC1-3|MAMDC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 374.0972595214844 3 373.822312 1118.44511 -0.34669 -0.0001296 -0.19343 -7.231E-05 -0.54013 -0.00020191 373.82211156063903 69.504 0.27876 66.113 66.015 66.294 -3.3903 12 7 3 0 0 0 0.96175 1 13165 13165 1.2148 0.97899 1 729280 9095 12486 5778 5782 9256 9256 -0.10937729233023674 EAQDAGYRMY 10 Unmodified _EAQDAGYRMY_ 0 0 0 nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB;ENST00000495897.2_1_10:75227245-75231333:-|nuORF;PPP3CB|p.S316Rfs*6|1|0.06|ENSG00000107758|chr10:73470723-73470723|A/-|frameshift_variant;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000120910|P48454-2|PPP3CC;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000120910|ENST00000240139|PPP3CC;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000120910|P48454-3|PPP3CC;ENSG00000138814|ENST00000394854|PPP3CA nc|ENSG00000107758|P16298-3|PPP3CB nc|ENSG00000107758|P16298-3|PPP3CB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2742919921875 2 602.258588 1202.50262 NaN NaN NaN NaN NaN NaN NaN 68.883 1 65.493 64.993 65.993 -3.3903 0 0 0 0.22588 1 13014 13014 3.9444 0 1 9096 2437 5779 5783 9257 9257 -0.09052887027451106 EAQEERPP 8 Unmodified _EAQEERPP_ 0 0 0 ENST00000374825.8_1_6:32940419-32940701:+|nuORF ENST00000374825.8_1_6:32940419-32940701:+|nuORF ENST00000374825.8_1_6:32940419-32940701:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7423400878906 2 478.227613 954.440674 -1.0782 -0.00051564 0.94048 0.00044976 -0.13776 -6.588E-05 478.2280179473479 18.883 0.59154 17.248 17.112 17.704 -1.6351 22 16 2 0 0 0 1.0249 1 2905 2905 5.7604 1.0044 1 1098900 9097 9229 5780 5784 9258 9258 -0.03836870384282065 EAQEILVN 8 Unmodified _EAQEILVN_ 0 0 0 REV__ENSG00000104714|ENST00000262109|ERICH1 REV__ENSG00000104714|ENST00000262109|ERICH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2355041503906 2 458.242732 914.470912 -0.47622 -0.00021822 1.3083 0.00059952 0.83209 0.0003813 458.2431655603706 37.367 0.37876 34.898 34.772 35.151 -2.4688 14 10 2 0 0 0 8448 1 6891 6891 0.25148 0.12861 1 824530 + 9098 14935 5781 5785 9259 9259 0.010254882809135779 EAQEVALVA 9 Unmodified _EAQEVALVA_ 0 0 0 ENST00000480825.6_1_1:36934562-36937301:-|nuORF;ENST00000487540.6_1_1:36933583-36937977:-|nuORF;ENST00000464365.2_1_1:36934562-36941005:-|nuORF;nc|ENSG00000119535|Q99062-2|CSF3R;nc|ENSG00000119535|Q99062-4|CSF3R;ENSG00000119535|ENST00000373106|CSF3R;nc|ENSG00000119535|Q99062-3|CSF3R ENST00000480825.6_1_1:36934562-36937301:-|nuORF ENST00000480825.6_1_1:36934562-36937301:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25054931640625 2 465.250557 928.486562 0.24219 0.00011268 -0.32314 -0.00015034 -0.080953 -3.7664E-05 465.2502292605724 108.92 0.70526 108.92 108.52 109.23 0 40 19 3 0 0 0 0.09143 2 21429 21384;21429 58.679 3.9053 1 2557700 9099 3083 5782 5786 9260;9261 9261 0.01945774797957256 EAQEVALVA 9 Unmodified _EAQEVALVA_ 0 0 0 ENST00000480825.6_1_1:36934562-36937301:-|nuORF;ENST00000487540.6_1_1:36933583-36937977:-|nuORF;ENST00000464365.2_1_1:36934562-36941005:-|nuORF;nc|ENSG00000119535|Q99062-2|CSF3R;nc|ENSG00000119535|Q99062-4|CSF3R;ENSG00000119535|ENST00000373106|CSF3R;nc|ENSG00000119535|Q99062-3|CSF3R ENST00000480825.6_1_1:36934562-36937301:-|nuORF ENST00000480825.6_1_1:36934562-36937301:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2502746582031 2 465.250557 928.486562 -0.21266 -9.8942E-05 -0.0051755 -2.4079E-06 -0.21784 -0.00010135 465.2504337111759 113.28 0.75372 108.82 108.4 109.15 -4.4539 47 20 3 0 0 0 0.057505 1 22306 22306 68.081 6.7232 1 3956200 9100 3083 5782 5786 9262 9262 0.01945774797957256 EAQEYGSF 8 Unmodified _EAQEYGSF_ 0 0 0 TPP2|p.F663Lfs*13|1|0.13|ENSG00000134900|chr13:102640342-102640342|T/-|frameshift_variant;TPP2|p.F722Lfs*12|1|0.06|ENSG00000134900|chr13:102643366-102643367|-/AAACTTA|frameshift_variant;nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2 TPP2|p.F663Lfs*13|1|0.13|ENSG00000134900|chr13:102640342-102640342|T/-|frameshift_variant TPP2|p.F663Lfs*13|1|0.13|ENSG00000134900|chr13:102640342-102640342|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2498474121094 2 465.695615 929.376677 0.049908 2.3242E-05 -0.06957 -3.2398E-05 -0.019662 -9.1567E-06 465.6955206742542 72.029 0.76228 72.029 71.777 72.539 0 37 21 2 0 0 0 0.50387 1 14009 14009 34.102 7.7612 1 2952700 9101 3882 5783 5787 9263 9263 -0.09083650541231236 EAQFSFQR 8 Unmodified _EAQFSFQR_ 0 0 0 ENST00000261597.8_1_18:2571510-2573058:+|nuORF ENST00000261597.8_1_18:2571510-2573058:+|nuORF ENST00000261597.8_1_18:2571510-2573058:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.8392639160156 3 338.166408 1011.47739 -0.38534 -0.00013031 0.4381 0.00014815 0.052754 1.784E-05 338.16654101756745 22.114 0.38368 22.114 21.875 22.258 0 19 10 2 0 0 0 0.88497 1 3679 3679 1.7423 1.6194 1 1012600 9102 8302 5784 5788 9264 9264 -0.027885737677138422 EAQFSFQR 8 Unmodified _EAQFSFQR_ 0 0 0 ENST00000261597.8_1_18:2571510-2573058:+|nuORF ENST00000261597.8_1_18:2571510-2573058:+|nuORF ENST00000261597.8_1_18:2571510-2573058:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 338.166408 1011.47739 0.57938 0.00019593 -0.42469 -0.00014362 0.15469 5.2313E-05 338.16625371706687 23.688 0.52316 22.135 21.868 22.392 -1.5532 0.019353 -0.00046636 NaN 1.7423 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1918000 9103 8302 5784 5788 -0.027885737677138422 EAQFSFQR 8 Unmodified _EAQFSFQR_ 0 0 0 ENST00000261597.8_1_18:2571510-2573058:+|nuORF ENST00000261597.8_1_18:2571510-2573058:+|nuORF ENST00000261597.8_1_18:2571510-2573058:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 338.166408 1011.47739 -0.039512 -1.3361E-05 0.19452 6.578E-05 0.15501 5.2418E-05 338.1664114243727 23.551 0.52223 22.098 21.818 22.34 -1.4535 -0.017861 0.00016183 NaN 1.7423 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1726500 9104 8302 5784 5788 -0.027885737677138422 EAQGAQASPP 10 Unmodified _EAQGAQASPP_ 0 0 0 SLC6A5|p.G226Efs*9|1|0.22|ENSG00000165970|chr11:20604418-20604418|G/-|frameshift_variant;nc|ENSG00000165970|Q9Y345-3|SLC6A5;ENSG00000165970|ENST00000525748|SLC6A5 SLC6A5|p.G226Efs*9|1|0.22|ENSG00000165970|chr11:20604418-20604418|G/-|frameshift_variant SLC6A5|p.G226Efs*9|1|0.22|ENSG00000165970|chr11:20604418-20604418|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7289123535156 2 478.227613 954.440674 -0.15653 -7.4855E-05 -0.32301 -0.00015447 -0.47953 -0.00022933 478.22762626114076 25.109 0.55497 23.256 23.084 23.638 -1.8534 28 15 3 0 0 0 0.67319 1 4157 4157 13.906 0.86358 1 1126600 9105 5681 5785 5789 9265 9265 -0.03836870384282065 EAQGWLEP 8 Unmodified _EAQGWLEP_ 0 0 0 ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant;CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant ENSG00000008300|ENST00000164024|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2441711425781 2 465.2218 928.429047 0.51056 0.00023752 -0.9702 -0.00045136 -0.45964 -0.00021384 465.22124678101346 119.5 0.88535 114.85 114.42 115.31 -4.645 41 24 2 0 0 0 8448 1 22902 22902 8.966 4.6824 1 2141400 9106 1042 5786 5790 9266 9266 -0.0380306740761398 EAQGWLEP 8 Unmodified _EAQGWLEP_ 0 0 0 ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant;CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant ENSG00000008300|ENST00000164024|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2498779296875 2 465.2218 928.429047 0.40166 0.00018686 -0.39305 -0.00018286 0.0086082 4.0047E-06 465.22146657329284 119.36 0.86948 114.89 114.36 115.23 -4.467 40 24 2 0 0 0 8448 1 22915 22915 8.966 8.7145 1 1677700 9107 1042 5786 5790 9267 9267 -0.0380306740761398 EAQIKASVP 9 Unmodified _EAQIKASVP_ 0 0 0 ENSG00000162929|ENST00000402291|SANBR;nc|ENSG00000162929|Q6NSI8-3|SANBR;ENST00000488322.2_1_2:61343196-61348412:+|nuORF ENSG00000162929|ENST00000402291|SANBR ENSG00000162929|ENST00000402291|SANBR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 471.7816467285156 2 471.766374 941.518196 0.49538 0.00023371 -0.41317 -0.00019492 0.082214 3.8786E-05 471.76611043318843 31.589 1.0481 29.441 29.023 30.071 -2.1483 86 29 4 0 0 0 0.11483 1 5401 5401 4.477 0 1 11676000 9108 5385 5787 5791 9268 9268 0.045097675518945834 EAQKAEKL 8 Unmodified _EAQKAEKL_ 0 0 0 ENSG00000205517|ENST00000380456|RGL3;ENST00000561687.1_1_19:11522087-11526832:-|nuORF;ENST00000563726.5_1_19:11522073-11527633:-|nuORF;RGL3|p.L196Wfs*60|1|0.18|ENSG00000205517|chr19:11415987-11415987|A/-|frameshift_variant;RGL3|p.D445Ifs*30|1|0.28|ENSG00000205517|chr19:11402244-11402244|C/-|frameshift_variant;nc|ENSG00000205517|Q3MIN7-2|RGL3 ENSG00000205517|ENST00000380456|RGL3 ENSG00000205517|ENST00000380456|RGL3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23516845703125 2 458.758549 915.502546 0.071441 3.2774E-05 0.26783 0.00012287 0.33927 0.00015564 458.75861497799417 40.871 0.45329 38.382 38.182 38.635 -2.4896 20 12 2 0 0 0 0.55701 1 7357 7357 41.84 5.7126 1 836940 9109 7647 5788 5792 9269 9269 0.04141481034844219 EAQKALRKA 9 Unmodified _EAQKALRKA_ 0 0 0 nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1;ENST00000569825.1_1_16:70287541-70292096:-|nuORF nc|ENSG00000090861|P49588-2|AARS1 nc|ENSG00000090861|P49588-2|AARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.5421142578125 3 338.873336 1013.59818 0.19159 6.4924E-05 -0.81042 -0.00027463 -0.61883 -0.0002097 338.87311858243316 27.032 0.77224 25.397 25.178 25.95 -1.6347 47 21 3 0 0 0 0.59831 1 4495 4495 0.0033805 0 1 4296600 9110 1793 5789 5793 9270 9270 0.09192253945741413 EAQKGGHF 8 Unmodified _EAQKGGHF_ 0 0 0 MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;ENST00000538136.1_1_2:48011218-48025765:+|nuORF;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2147216796875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 96.185 1 92.135 91.635 92.635 -4.0496 0 0 0 0.21486 1 18857 18857 8.5933 1.304 1 9111 2905 5790 5794 9271 9271 -0.027245144849416647 EAQKKVFSE 9 Unmodified _EAQKKVFSE_ 0 0 0 REV__MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant REV__MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2642822265625 2 533.282389 1064.55022 0.10612 5.659E-05 0.73647 0.00039275 0.84259 0.00044934 533.7844442979363 34.931 0.34073 34.931 34.759 35.099 0 20 9 3 0 0 0 0.55979 2 6383 6383;6390 15.847 5.0233 1 1050700 + 9112 14615 5791 5795 9272;9273 9272 0.020531352350417365 EAQKKVFSE 9 Unmodified _EAQKKVFSE_ 0 0 0 REV__MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant REV__MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825317382812 2 533.282389 1064.55022 0.2915 0.00015545 0.30039 0.00016019 0.59189 0.00031564 533.2822933388209 37.245 0.56295 34.907 34.557 35.12 -2.3375 22 15 2 0 0 0 0.54354 1 6617 6617 16.942 3.0362 1 637000 + 9113 14615 5791 5795 9274 9274 0.020531352350417365 EAQKRYEAA 9 Unmodified _EAQKRYEAA_ 0 0 0 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2689819335938 2 533.269813 1064.52507 0.34007 0.00018135 -0.96906 -0.00051677 -0.62898 -0.00033542 533.2691403477792 43.024 0.38013 43.024 42.809 43.19 0 13 10 2 0 0 0 0.57447 1 8057 8057 14.838 3.198 1 558270 9114 25903 5792 5796 9275 9275 -0.004609195675357114 EAQKRYEAA 9 Unmodified _EAQKRYEAA_ 0 0 0 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2693481445312 2 533.269813 1064.52507 -0.082584 -4.4039E-05 0.10522 5.611E-05 0.022635 1.2071E-05 533.2698127370397 41.989 0.82595 39.27 38.763 39.589 -2.7191 51 23 4 0 0 0 0.54354 1 7769 7769 16.942 0 1 8064100 9115 25903 5792 5796 9276 9276 -0.004609195675357114 EAQKRYEAA 9 Unmodified _EAQKRYEAA_ 0 0 0 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.269287109375 2 533.269813 1064.52507 0.057383 3.0601E-05 -0.64602 -0.0003445 -0.58864 -0.0003139 533.2694805886441 45.893 0.4854 43.052 42.791 43.276 -2.8409 19 13 2 0 0 0 0.52396 1 8673 8673 18.146 4.2403 1 1461700 9116 25903 5792 5796 9277 9277 -0.004609195675357114 EAQKRYEAA 9 Unmodified _EAQKRYEAA_ 0 0 0 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2696533203125 2 533.269813 1064.52507 -0.049262 -2.627E-05 -0.46445 -0.00024768 -0.51371 -0.00027395 533.269532099928 45.915 0.41779 43.049 42.747 43.165 -2.8666 17 11 2 0 0 0 0.52396 2 8347 8324;8347 18.146 3.741 1 1351400 9117 25903 5792 5796 9278;9279 9279 -0.004609195675357114 EAQKVKQAS 9 Unmodified _EAQKVKQAS_ 0 0 0 LXN|p.V34A|1|0.07|ENSG00000079257|chr3:158672378-158672378|A/G|missense_variant LXN|p.V34A|1|0.07|ENSG00000079257|chr3:158672378-158672378|A/G|missense_variant LXN|p.V34A|1|0.07|ENSG00000079257|chr3:158672378-158672378|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 330.012939453125 3 330.185579 987.534909 0.014259 4.7081E-06 0.0139 4.5896E-06 0.028159 9.2978E-06 330.18552074744304 24.355 0.3117 22.821 22.679 22.991 -1.5342 12 8 2 0 0 0 0.88284 1 3950 3950 0.96228 0 1 599280 9118 12100 5793 5797 9280 9280 0.040642684378553895 EAQKVKQAS 9 Unmodified _EAQKVKQAS_ 0 0 0 LXN|p.V34A|1|0.07|ENSG00000079257|chr3:158672378-158672378|A/G|missense_variant LXN|p.V34A|1|0.07|ENSG00000079257|chr3:158672378-158672378|A/G|missense_variant LXN|p.V34A|1|0.07|ENSG00000079257|chr3:158672378-158672378|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 330.185579 987.534909 0.71639 0.00023654 -0.67689 -0.0002235 0.0395 1.3042E-05 330.1853088304259 24.497 0.31028 22.849 22.649 22.959 -1.6482 0.014011 -0.00034874 NaN 0.96228 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 708150 9119 12100 5793 5797 0.040642684378553895 EAQKVKWTIR 10 Unmodified _EAQKVKWTIR_ 0 0 0 REV__TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant REV__TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7605590820312 2 629.866954 1257.71936 0.31531 0.00019861 -0.064581 -4.0678E-05 0.25073 0.00015793 629.8679736528434 58.463 0.21247 55.212 55.135 55.348 -3.2517 6 5 2 0 0 0 0.75777 1 10873 10873 3.2813 0.54611 1 404620 + 9120 16181 5794 5798 9281 9281 0.10080456588411835 EAQKVKWTIR 10 Unmodified _EAQKVKWTIR_ 0 0 0 REV__TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant REV__TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 629.866954 1257.71936 0.31531 0.00019861 -0.064581 -4.0678E-05 0.25073 0.00015793 629.8679736528434 58.463 0.21247 55.212 55.135 55.348 -3.2517 -0.052508 0.002641 NaN 3.2813 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 404620 + 9121 16181 5794 5798 0.10080456588411835 EAQKVKWTIR 10 Unmodified _EAQKVKWTIR_ 0 0 0 REV__TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant REV__TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 629.866954 1257.71936 0.32905 0.00020726 -3.7357 -0.002353 -3.4067 -0.0021457 630.3649283714153 58.522 0.20528 55.317 55.163 55.368 -3.2052 0.052508 -0.0019836 NaN 3.2813 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 563910 + 9122 16181 5794 5798 0.10080456588411835 EAQLARPPP 9 Unmodified _EAQLARPPP_ 0 0 0 REV__ENSG00000081985|ENST00000674203|IL12RB2 REV__ENSG00000081985|ENST00000674203|IL12RB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2745361328125 2 489.771991 977.529429 0.1034 5.0642E-05 0.28984 0.00014195 0.39323 0.0001926 489.7721615535647 16.351 0.27538 16.351 16.129 16.405 0 11 7 2 0 0 0 0.57447 1 2524 2524 14.838 3.3436 1 311710 + 9123 14434 5795 5799 9282 9282 0.039765896460380645 EAQLLPPMKP 10 Unmodified _EAQLLPPMKP_ 0 0 0 REV__BAIAP2L1|p.A287Lfs*11|2|0.27|ENSG00000006453|chr7:98310542-98310542|G/-|frameshift_variant REV__BAIAP2L1|p.A287Lfs*11|2|0.27|ENSG00000006453|chr7:98310542-98310542|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21002197265625 3 375.210849 1122.61072 NaN NaN NaN NaN NaN NaN NaN 46.451 1 43.61 43.11 44.11 -2.8409 0 0 0 2.8426 1 8769 8769 0.043787 0 1 + 9124 13177 5796 5800 9283 9283 0.0543152929376447 EAQLRELMEKV 11 Unmodified _EAQLRELMEKV_ 0 0 0 nc|ENSG00000133561|Q6P9H5-2|GIMAP6;ENSG00000133561|ENST00000328902|GIMAP6 nc|ENSG00000133561|Q6P9H5-2|GIMAP6 nc|ENSG00000133561|Q6P9H5-2|GIMAP6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.12115478515625 3 449.242988 1344.70714 0.3907 0.00017552 -2.2588 -0.0010147 -1.8681 -0.00083922 449.2419463974598 32.096 0.41522 29.948 29.722 30.137 -2.1483 16 11 2 0 0 0 0.96197 1 5555 5555 0.40827 0 1 507640 9125 3807 5797 5801 9284 9284 0.04857052063039191 EAQLRRAEWRQ 11 Unmodified _EAQLRRAEWRQ_ 0 0 0 nc|ENSG00000176155|Q2TAC2|CCDC57;ENSG00000176155|ENST00000694881|CCDC57;CCDC57|p.A501Hfs*12|1|0.38|ENSG00000176155|chr17:82178479-82178479|C/-|frameshift_variant;nc|ENSG00000176155|Q2TAC2-2|CCDC57 nc|ENSG00000176155|Q2TAC2|CCDC57 nc|ENSG00000176155|Q2TAC2|CCDC57 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2427673339844 3 481.591891 1441.75384 -0.060874 -2.9317E-05 -1.1987 -0.00057726 -1.2595 -0.00060658 481.59129423863214 34.116 0.31729 31.799 31.664 31.981 -2.3175 12 8 2 0 0 0 0.66106 1 6291 6291 0.00056442 0 1 717790 9126 6451 5798 5802 9285 9285 0.05063672729193058 EAQNGWLY 8 Unmodified _EAQNGWLY_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2653503417969 2 490.727249 979.439946 NaN NaN NaN NaN NaN NaN NaN 42.52 1 39.801 39.301 40.301 -2.7191 0 0 0 0.20294 1 7955 7955 23.148 1.4018 1 9127 3519 5799 5803 9286 9286 -0.05059665033343208 EAQNPQRSI 9 Unmodified _EAQNPQRSI_ 0 0 0 ENSG00000165349|ENST00000374299|SLC7A3 ENSG00000165349|ENST00000374299|SLC7A3 ENSG00000165349|ENST00000374299|SLC7A3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2811889648438 2 521.767437 1041.52032 -0.85615 -0.00044671 -2.0735 -0.0010819 -2.9297 -0.0015286 521.7659240899983 22.155 0.83943 20.701 20.386 21.226 -1.4535 34 23 2 0 0 0 0.68435 1 3503 3503 7.2892 0.56607 1 393380 9128 5621 5800 5804 9287 9287 0.0012219628970342455 EAQPARPPP 9 Unmodified _EAQPARPPP_ 0 0 0 ENST00000586582.5_1_19:4543214-4543517:-|nuORF ENST00000586582.5_1_19:4543214-4543517:-|nuORF ENST00000586582.5_1_19:4543214-4543517:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7784729003906 2 481.756341 961.498129 0.13702 6.601E-05 -0.044844 -2.1604E-05 0.092174 4.4406E-05 481.75624997986426 62.294 1.0728 59.054 58.554 59.627 -3.2395 90 30 4 0 0 0 0.52414 1 11789 11789 18.135 1.0221 1 25796000 9129 11554 5801 5805 9288 9288 0.015840166119346577 EAQPPLFK 8 Unmodified _EAQPPLFK_ 0 0 0 REV__nc|ENSG00000155093|Q92932-2|PTPRN2 REV__nc|ENSG00000155093|Q92932-2|PTPRN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.23876953125 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 40.925 1 40.925 40.425 41.425 0 0 0 0 0.21486 1 7623 7623 10.824 0.64053 1 + 9130 17207 5802 5806 9289 9289 0.034706863857991266 EAQPRFPA 8 Unmodified _EAQPRFPA_ 0 0 0 ENST00000548477.5_1_12:113772646-113772703:-|nuORF ENST00000548477.5_1_12:113772646-113772703:-|nuORF ENST00000548477.5_1_12:113772646-113772703:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2383117675781 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 48.869 1 45.871 45.371 46.371 -2.999 0 0 0 0.17344 1 8925 8925 34.102 1.797 1 9131 11152 5803 5807 9290 9290 0.00036345066178000707 EAQPRFPA 8 Unmodified _EAQPRFPA_ 0 0 0 ENST00000548477.5_1_12:113772646-113772703:-|nuORF ENST00000548477.5_1_12:113772646-113772703:-|nuORF ENST00000548477.5_1_12:113772646-113772703:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2378234863281 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 48.888 1 45.881 45.381 46.381 -3.0068 0 0 0 0.18303 1 8956 8956 30.637 5.2372 1 9132 11152 5803 5807 9291 9291 0.00036345066178000707 EAQPRFPA 8 Unmodified _EAQPRFPA_ 0 0 0 ENST00000548477.5_1_12:113772646-113772703:-|nuORF ENST00000548477.5_1_12:113772646-113772703:-|nuORF ENST00000548477.5_1_12:113772646-113772703:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384948730469 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 109.59 1 105.4 104.9 105.9 -4.1826 0 0 0 0.21486 1 21090 21090 5.7604 0 1 9133 11152 5803 5807 9292 9292 0.00036345066178000707 EAQQDLGI 8 Unmodified _EAQQDLGI_ 0 0 0 REV__ENSG00000147896|ENST00000276943|IFNK REV__ENSG00000147896|ENST00000276943|IFNK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21929931640625 2 437.219257 872.423961 0.16678 7.2918E-05 -0.10627 -4.6462E-05 0.060511 2.6457E-05 437.2191843119361 33.54 1.1188 33.54 33.059 34.178 0 71 31 3 0 0 0 8448 1 6233 6233 0.62683 0 1 5196100 + 9134 16958 5804 5808 9293 9293 -0.017353712702515622 EAQQLILVHQ 10 Unmodified _EAQQLILVHQ_ 0 0 0 REV__ENST00000392806.3_1_12:108984974-108985196:-|nuORF REV__ENST00000392806.3_1_12:108984974-108985196:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2572631835938 2 589.830037 1177.64552 NaN NaN NaN NaN NaN NaN NaN 28.587 1 26.832 26.332 27.332 -1.7552 0 0 0 2.8426 1 4833 4833 0.043787 0.030522 1 + 9135 21225 5805 5809 9294 9294 0.0638048842608896 EAQRDYHY 8 Unmodified _EAQRDYHY_ 0 0 0 REV__CATSPERD|p.S206Ffs*33|1|0.31|ENSG00000174898|chr19:5744462-5744463|-/T|frameshift_variant REV__CATSPERD|p.S206Ffs*33|1|0.31|ENSG00000174898|chr19:5744462-5744463|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2742309570312 2 541.238513 1080.46247 0.10602 5.738E-05 -0.97962 -0.00053021 -0.8736 -0.00047283 541.2379544211036 70.337 1.1935 70.337 69.777 70.97 0 98 33 4 0 0 0 8448 1 13743 13743 1.7423 0 1 34083000 + 9136 13274 5806 5810 9295 9295 -0.07454065635715779 EAQRDYHY 8 Unmodified _EAQRDYHY_ 0 0 0 REV__CATSPERD|p.S206Ffs*33|1|0.31|ENSG00000174898|chr19:5744462-5744463|-/T|frameshift_variant REV__CATSPERD|p.S206Ffs*33|1|0.31|ENSG00000174898|chr19:5744462-5744463|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.279296875 2 541.238513 1080.46247 0.29652 0.00016049 1.9325 0.0010459 2.229 0.0012064 541.7411212643956 37.784 0.17224 35.446 35.362 35.535 -2.3375 6 4 2 0 0 0 0.71876 1 6694 6694 11.64 4.9171 1 319860 + 9137 13274 5806 5810 9296 9296 -0.07454065635715779 EAQRDYHY 8 Unmodified _EAQRDYHY_ 0 0 0 REV__CATSPERD|p.S206Ffs*33|1|0.31|ENSG00000174898|chr19:5744462-5744463|-/T|frameshift_variant REV__CATSPERD|p.S206Ffs*33|1|0.31|ENSG00000174898|chr19:5744462-5744463|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27587890625 2 541.238513 1080.46247 NaN NaN NaN NaN NaN NaN NaN 89.234 1 85.463 84.963 85.963 -3.7706 0 0 0 0.21452 1 17087 17087 13.508 4.9146 1 + 9138 13274 5806 5810 9297 9297 -0.07454065635715779 EAQREADMH 9 Unmodified _EAQREADMH_ 0 0 0 ENST00000496443.5_1_2:220111358-220112169:+|nuORF;ENST00000475342.5_1_2:220110721-220112169:+|nuORF;ENST00000461417.5_1_2:220110721-220111658:+|nuORF;ENST00000496800.5_1_2:220110721-220112335:+|nuORF;ENST00000475696.5_1_2:220110721-220112662:+|nuORF;ENSG00000115661|ENST00000396738|STK16 ENST00000496443.5_1_2:220111358-220112169:+|nuORF ENST00000496443.5_1_2:220111358-220112169:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7725830078125 2 543.73528 1085.45601 NaN NaN NaN NaN NaN NaN NaN 15.857 1 14.635 14.135 15.135 -1.2219 0 0 0 0.23508 1 2248 2248 4.756 0.81161 1 9139 2876 5807 5811 9298 9298 -0.08330326858754233 EAQRGEVTGP 10 Unmodified _EAQRGEVTGP_ 0 0 0 nc|ENSG00000174516|Q8N2H9-4|PELI3;ENSG00000174516|ENST00000320740|PELI3 nc|ENSG00000174516|Q8N2H9-4|PELI3 nc|ENSG00000174516|Q8N2H9-4|PELI3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2597045898438 2 522.259445 1042.50434 NaN NaN NaN NaN NaN NaN NaN 25.319 1 25.319 24.819 25.819 0 0 0 0 0.22588 1 4387 4387 10.8 0.72558 1 9140 6354 5808 5812 9299 9299 -0.015215099471561189 EAQRGPCL 8 Unmodified _EAQRGPCL_ 0 0 0 ENSG00000007376|ENST00000007264|RPUSD1 ENSG00000007376|ENST00000007264|RPUSD1 ENSG00000007376|ENST00000007264|RPUSD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2168273925781 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 93.732 1 93.732 93.232 94.232 0 0 0 0 0.21486 1 18346 18346 10.183 0.83596 1 9141 1023 5809 5813 9300 9300 -0.023875877025943737 EAQRGPCL 8 Unmodified _EAQRGPCL_ 0 0 0 ENSG00000007376|ENST00000007264|RPUSD1 ENSG00000007376|ENST00000007264|RPUSD1 ENSG00000007376|ENST00000007264|RPUSD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.216796875 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 63.434 1 60.018 59.518 60.518 -3.4158 0 0 0 0.21486 1 11849 11849 5.7604 0 1 9142 1023 5809 5813 9301 9301 -0.023875877025943737 EAQRKKEEY 9 Unmodified _EAQRKKEEY_ 0 0 0 REV__USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant REV__USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2674560546875 2 590.801477 1179.5884 0.36328 0.00021463 -0.38161 -0.00022545 -0.018324 -1.0826E-05 590.8009734414495 49.762 0.48945 46.881 46.59 47.079 -2.8811 21 13 2 0 0 0 0.8319 1 9415 9415 7.9102 0 1 1586500 + 9143 15251 5810 5814 9302 9302 0.005790211497242126 EAQRRGAQ 8 Unmodified _EAQRRGAQ_ 0 0 0 ENST00000344920.8_1_5:43603232-43609347:+|nuORF ENST00000344920.8_1_5:43603232-43609347:+|nuORF ENST00000344920.8_1_5:43603232-43609347:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2396240234375 2 458.24139 914.468226 NaN NaN NaN NaN NaN NaN NaN 62.944 1 59.528 59.028 60.028 -3.4158 0 0 0 0.21171 1 11755 11755 15.847 4.2069 1 9144 8900 5811 5815 9303 9303 0.0075707766661707865 EAQRRGRGN 9 Unmodified _EAQRRGRGN_ 0 0 0 REV__ENST00000556674.1_1_14:76448035-76449188:-|nuORF REV__ENST00000556674.1_1_14:76448035-76449188:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2787475585938 2 522.276295 1042.53804 NaN NaN NaN NaN NaN NaN NaN 130.94 1 130.94 130.44 131.44 0 0 0 0 0.23508 1 25887 25887 6.2058 0.44535 1 + 9145 23001 5812 5816 9304 9304 0.01846956335248251 EAQRSYIL 8 Unmodified _EAQRSYIL_ 0 0 0 ENSG00000175354|ENST00000309660|PTPN2;nc|ENSG00000175354|P17706-3|PTPN2;nc|ENSG00000175354|P17706-2|PTPN2;PTPN1|p.G377Efs*27|2|0.27|ENSG00000196396|chr20:50581301-50581301|G/-|frameshift_variant;nc|ENSG00000175354|P17706-4|PTPN2;ENSG00000196396|ENST00000371621|PTPN1 ENSG00000175354|ENST00000309660|PTPN2 ENSG00000175354|ENST00000309660|PTPN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2645263671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 87.702 1 83.91 83.41 84.41 -3.7926 0 0 0 0.2074 1 17151 17151 19.439 0 1 9146 6403 5813 5817 9305 9305 0.023328834091330464 EAQSDEDDD 9 Unmodified _EAQSDEDDD_ 0 0 0 REV__HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant REV__HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.1488952636719 3 341.784357 1022.33124 NaN NaN NaN NaN NaN NaN NaN 43.19 1 43.19 42.69 43.69 0 0 0 0 0.19623 1 8091 8091 0.20686 0.20348 1 + 9147 14618 5814 5818 9306 9306 -0.17902965584937647 EAQSDEEEE 9 Unmodified _EAQSDEEEE_ 0 0 0 REV__ENST00000580029.1_1_17:37790107-37792115:+|nuORF REV__ENST00000580029.1_1_17:37790107-37792115:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2813110351562 2 533.196373 1064.37819 NaN NaN NaN NaN NaN NaN NaN 28.361 1 28.361 27.861 28.861 0 0 0 0 0.23508 1 5034 5034 3.9444 0.3479 1 + 9148 16088 5815 5819 9307 9307 -0.15142106033795244 EAQTLQQY 8 Unmodified _EAQTLQQY_ 0 0 0 STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant;STAT5B|p.K583Nfs*16|2|0.34|ENSG00000173757|chr17:42210429-42210429|T/-|frameshift_variant;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.260498046875 2 490.737814 979.461075 NaN NaN NaN NaN NaN NaN NaN 39.947 1 37.397 36.897 37.897 -2.5491 0 0 0 0.21171 1 7431 7431 15.847 1.0089 1 9149 3436 5816 5820 9308 9308 -0.02947699724472841 EAQVFVRLRR 10 Unmodified _EAQVFVRLRR_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2535705566406 3 425.254439 1272.74149 NaN NaN NaN NaN NaN NaN NaN 24.925 1 23.276 22.776 23.776 -1.6482 0 0 0 0.22588 1 4359 4359 3.0723 1.1448 1 9150 1843 5817 5821 9309 9309 0.11602681056820074 EAQVHTIRI 9 Unmodified _EAQVHTIRI_ 0 0 0 ENSG00000277322|ENST00000619213|GOLGA6L6;nc|ENSG00000273756|P0DX02|GOLGA6L26;ENSG00000273976|ENST00000614055|GOLGA6L1;ENST00000567652.1_3_15:28798864-28806522:+|nuORF;nc|ENSG00000227717|P0DX01|GOLGA6L25;ENSG00000277865|ENST00000622895|GOLGA6L22 ENSG00000277322|ENST00000619213|GOLGA6L6 ENSG00000277322|ENST00000619213|GOLGA6L6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26904296875 2 533.803823 1065.59309 -0.70798 -0.00037792 1.2653 0.00067541 0.55729 0.00029748 533.8044058671624 21.139 0.34525 19.418 19.253 19.598 -1.7211 15 9 2 0 0 0 0.86693 1 3321 3321 6.2058 0 1 1192400 9151 8034 5818 5822 9310 9310 0.06291950083118536 EAQVPQGNI 9 Unmodified _EAQVPQGNI_ 0 0 0 ENSG00000164073|ENST00000641686|MFSD8;ENST00000505284.5_1_4:128842916-128886288:-|nuORF;ENST00000515130.5_1_4:128842916-128886236:-|nuORF ENSG00000164073|ENST00000641686|MFSD8 ENSG00000164073|ENST00000641686|MFSD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7236633300781 2 478.245806 954.47706 0.034848 1.6666E-05 -0.32537 -0.00015561 -0.29052 -0.00013894 478.245591139474 51.627 0.37971 48.582 48.368 48.748 -3.0453 16 10 2 0 0 0 0.57447 1 9449 9449 14.838 0.93222 1 693100 9152 5502 5819 5823 9311 9311 -0.001999934875584586 EAQVRCAP 8 Unmodified _EAQVRCAP_ 0 0 0 REV__PPIP5K2|p.G519C|1|0.1|ENSG00000145725|chr5:103158253-103158253|G/T|missense_variant REV__PPIP5K2|p.G519C|1|0.1|ENSG00000145725|chr5:103158253-103158253|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2102355957031 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 15.659 1 14.437 13.937 14.937 -1.2219 0 0 0 0.23899 1 2209 2209 1.3295 1.3213 1 + 9153 24500 5820 5824 9312 9312 -0.023875877026057424 EAQYAVEYL 9 Unmodified _EAQYAVEYL_ 0 0 0 REV__ENSG00000113569|ENST00000231498|NUP155 REV__ENSG00000113569|ENST00000231498|NUP155 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7715454101562 2 543.261122 1084.50769 0.45795 0.00024879 -2.6834 -0.0014578 -2.2255 -0.001209 543.2601617136872 120.28 0.6181 115.81 115.37 115.99 -4.467 27 17 2 0 0 0 0.46882 1 23158 23158 21.537 3.3906 1 1240800 + 9154 15347 5821 5825 9313 9313 -0.03118259893199138 EAQYFKQCY 9 Unmodified _EAQYFKQCY_ 0 0 0 REV__nc|ENSG00000166401|P50452-2|SERPINB8 REV__nc|ENSG00000166401|P50452-2|SERPINB8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2605590820312 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 31.817 1 31.817 31.317 32.317 0 0 0 0 0.23508 1 5758 5758 4.756 0.81161 1 + 9155 17844 5822 5826 9314 9314 -0.0754679753374603 EAQYFKQCY 9 Unmodified _EAQYFKQCY_ 0 0 0 REV__nc|ENSG00000166401|P50452-2|SERPINB8 REV__nc|ENSG00000166401|P50452-2|SERPINB8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2586059570312 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 20.045 1 18.648 18.148 19.148 -1.3966 0 0 0 0.23508 1 3332 3332 7.9102 3.9658 1 + 9156 17844 5822 5826 9315 9315 -0.0754679753374603 EAQYFKQCY 9 Unmodified _EAQYFKQCY_ 0 0 0 REV__nc|ENSG00000166401|P50452-2|SERPINB8 REV__nc|ENSG00000166401|P50452-2|SERPINB8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2625732421875 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 44.947 1 42.157 41.657 42.657 -2.79 0 0 0 0.23508 1 8458 8458 4.756 0.81161 1 + 9157 17844 5822 5826 9316 9316 -0.0754679753374603 EAQYGLGRSV 10 Unmodified _EAQYGLGRSV_ 0 0 0 REV__ENST00000397412.7_1_16:1725816-1726149:+|nuORF REV__ENST00000397412.7_1_16:1725816-1726149:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2804565429688 2 540.277638 1078.54072 -0.18432 -9.9584E-05 0.45655 0.00024666 0.27222 0.00014708 540.277819481488 37.502 0.55199 35.033 34.708 35.26 -2.4688 48 15 4 0 0 0 0.67606 1 6958 6958 13.615 1.3742 1 12976000 + 9158 21302 5823 5827 9317 9317 0.004593669495079666 EAQYQREY 8 Unmodified _EAQYQREY_ 0 0 0 ENST00000589493.1_1_17:40967924-40970674:-|nuORF;ENSG00000126581|ENST00000590099|BECN1 ENST00000589493.1_1_17:40967924-40970674:-|nuORF ENST00000589493.1_1_17:40967924-40970674:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7728881835938 2 543.74617 1085.47779 NaN NaN NaN NaN NaN NaN NaN 32.709 1 32.709 32.209 33.209 0 0 0 0 0.20294 1 5950 5950 23.148 3.7094 1 9159 3438 5824 5828 9318 9318 -0.061531988385240766 EAQYVRLY 8 Unmodified _EAQYVRLY_ 0 0 0 ENST00000559259.1_1_15:89448967-89449934:-|nuORF;nc|ENSG00000140545|Q08431-2|MFGE8;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;MFGE8|p.A307Pfs*66|1|0.25|ENSG00000140545|chr15:88899763-88899763|C/-|frameshift_variant;ENSG00000140545|ENST00000268150|MFGE8 ENST00000559259.1_1_15:89448967-89449934:-|nuORF ENST00000559259.1_1_15:89448967-89449934:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2718505859375 2 521.271824 1040.5291 0.20595 0.00010735 0.62031 0.00032335 0.82625 0.0004307 521.2720779900853 127.85 0.8009 127.85 127.44 128.24 0 46 22 3 0 0 0 0.27274 1 25214 25214 38.151 0 1 6112600 9160 4311 5825 5829 9319 9319 0.010451699261921021 EAQYVRLY 8 Unmodified _EAQYVRLY_ 0 0 0 ENST00000559259.1_1_15:89448967-89449934:-|nuORF;nc|ENSG00000140545|Q08431-2|MFGE8;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;MFGE8|p.A307Pfs*66|1|0.25|ENSG00000140545|chr15:88899763-88899763|C/-|frameshift_variant;ENSG00000140545|ENST00000268150|MFGE8 ENST00000559259.1_1_15:89448967-89449934:-|nuORF ENST00000559259.1_1_15:89448967-89449934:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.271824 1040.5291 -0.24656 -0.00012853 0.61114 0.00031857 0.36457 0.00019004 521.2721390596035 132.45 0.67807 127.81 127.48 128.16 -4.6399 -0.0010465 1.6841E-05 NaN 38.151 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 5276500 9161 4311 5825 5829 0.010451699261921021 EAQYVRLY 8 Unmodified _EAQYVRLY_ 0 0 0 ENST00000559259.1_1_15:89448967-89449934:-|nuORF;nc|ENSG00000140545|Q08431-2|MFGE8;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;MFGE8|p.A307Pfs*66|1|0.25|ENSG00000140545|chr15:88899763-88899763|C/-|frameshift_variant;ENSG00000140545|ENST00000268150|MFGE8 ENST00000559259.1_1_15:89448967-89449934:-|nuORF ENST00000559259.1_1_15:89448967-89449934:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.271824 1040.5291 -0.67588 -0.00035232 0.97768 0.00050964 0.3018 0.00015732 521.2723332880042 132.65 0.74873 127.8 127.46 128.21 -4.8527 -0.016552 0.00039897 NaN 38.151 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5159600 9162 4311 5825 5829 0.010451699261921021 EAQYVRLY 8 Unmodified _EAQYVRLY_ 0 0 0 ENST00000559259.1_1_15:89448967-89449934:-|nuORF;nc|ENSG00000140545|Q08431-2|MFGE8;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;MFGE8|p.A307Pfs*66|1|0.25|ENSG00000140545|chr15:88899763-88899763|C/-|frameshift_variant;ENSG00000140545|ENST00000268150|MFGE8 ENST00000559259.1_1_15:89448967-89449934:-|nuORF ENST00000559259.1_1_15:89448967-89449934:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.271824 1040.5291 0.24246 0.00012639 0.22909 0.00011942 0.47154 0.0002458 521.2719318775268 132.59 0.83063 127.79 127.39 128.22 -4.799 -0.023461 -0.00038147 NaN 38.151 43 23 2 NaN NaN NaN NaN 0 NaN NaN 0 4413600 9163 4311 5825 5829 0.010451699261921021 EARAGEGPKR 10 Unmodified _EARAGEGPKR_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A REV__ENSG00000198785|ENST00000361820|GRIN3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.548583984375 3 357.528228 1069.56285 -0.25015 -8.9434E-05 -4.3322 -0.0015489 -4.5823 -0.0016383 357.52641863802893 22.381 0.62704 22.381 21.909 22.536 0 22 17 2 0 0 0 0.75212 1 3800 3800 5.0475 0 1 859950 + 9164 19448 5826 5830 9320 9320 0.030855914179255706 EARAGEGPKR 10 Unmodified _EARAGEGPKR_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A REV__ENSG00000198785|ENST00000361820|GRIN3A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 357.528228 1069.56285 -0.024491 -8.7561E-06 -3.5018 -0.001252 -3.5263 -0.0012608 357.5268708484538 23.798 0.37797 22.264 22.092 22.47 -1.5342 -0.046342 0.00031011 NaN 5.0475 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1766900 + 9165 19448 5826 5830 0.030855914179255706 EARAGEGPKR 10 Unmodified _EARAGEGPKR_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A REV__ENSG00000198785|ENST00000361820|GRIN3A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.528228 1069.56285 -1.0105 -0.00036129 -3.5449 -0.0012674 -4.5555 -0.0016287 357.52680138936324 24.075 0.44917 22.221 21.949 22.398 -1.8534 -0.088707 0.0002639 NaN 5.0475 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 920700 + 9166 19448 5826 5830 0.030855914179255706 EARAGNPCLL 10 Unmodified _EARAGNPCLL_ 0 0 0 REV__MFI2|p.V627Cfs*29|1|0.15|ENSG00000163975|chr3:197006608-197006609|-/A|frameshift_variant REV__MFI2|p.V627Cfs*29|1|0.15|ENSG00000163975|chr3:197006608-197006609|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.269287109375 2 522.268758 1042.52296 NaN NaN NaN NaN NaN NaN NaN 15.75 1 15.75 15.25 16.25 0 0 0 0 0.22588 1 2416 2416 3.2813 0 1 + 9167 17633 5827 5831 9321 9321 0.003403284230216741 EARAGNPCLL 10 Unmodified _EARAGNPCLL_ 0 0 0 REV__MFI2|p.V627Cfs*29|1|0.15|ENSG00000163975|chr3:197006608-197006609|-/A|frameshift_variant REV__MFI2|p.V627Cfs*29|1|0.15|ENSG00000163975|chr3:197006608-197006609|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2568359375 2 522.268758 1042.52296 -1.019 -0.00053221 1.4981 0.0007824 0.47904 0.00025019 522.2691353375973 19.43 0.59086 18.105 17.755 18.346 -1.3251 26 16 3 0 0 0 0.68961 1 2983 2983 12.241 2.8575 1 2860700 + 9168 17633 5827 5831 9322 9322 0.003403284230216741 EARANQLA 8 Unmodified _EARANQLA_ 0 0 0 nc|ENSG00000204842|Q99700-2|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ATXN2|p.T582Yfs*32|1|0.16|ENSG00000204842|chr12:111516266-111516267|-/T|frameshift_variant;nc|ENSG00000204842|Q99700-5|ATXN2 nc|ENSG00000204842|Q99700-2|ATXN2 nc|ENSG00000204842|Q99700-2|ATXN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2355041503906 2 436.732866 871.451179 -0.81086 -0.00035413 1.131 0.00049394 0.32012 0.00013981 436.7331959587612 21.992 0.33894 20.271 20.087 20.425 -1.7211 15 9 2 0 0 0 0.69031 1 3466 3466 15.847 1.4418 1 663410 9169 7613 5828 5832 9323 9323 0.010311570607996146 EARAPPSQLP 10 Unmodified _EARAPPSQLP_ 0 0 0 ENSG00000178882|ENST00000546355|RFLNA ENSG00000178882|ENST00000546355|RFLNA ENSG00000178882|ENST00000546355|RFLNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2871704101562 2 533.288005 1064.56146 0.010207 5.4431E-06 0.41208 0.00021976 0.42229 0.0002252 533.2881674554787 15.7 0.58491 15.7 15.473 16.058 0 38 16 3 0 0 0 0.5575 2 2378 2378;2452 21.537 5.3879 1 1743900 9170 6596 5829 5833 9324;9325 9324 0.031759573291765264 EARAPPSQLP 10 Unmodified _EARAPPSQLP_ 0 0 0 ENSG00000178882|ENST00000546355|RFLNA ENSG00000178882|ENST00000546355|RFLNA ENSG00000178882|ENST00000546355|RFLNA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.275390625 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 16.906 1 15.634 15.134 16.134 -1.2722 0 0 0 0.22588 1 2459 2459 13.042 0.51092 1 9171 6596 5829 5833 9326 9326 0.031759573291765264 EARCCCCAC 9 Unmodified _EARCCCCAC_ 0 0 0 nc|nan|Q9H972-2|C14orf93;ENSG00000100802|ENST00000299088|C14orf93 nc|nan|Q9H972-2|C14orf93 nc|nan|Q9H972-2|C14orf93 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2547302246094 2 481.144486 960.274419 NaN NaN NaN NaN NaN NaN NaN 32 1 32 31.5 32.5 0 0 0 0 0.23508 1 5798 5798 2.0598 1.2661 1 9172 2014 5830 5834 9327 9327 -0.20730745743674106 EARDKGLRHEP 11 Unmodified _EARDKGLRHEP_ 0 0 0 ENSG00000047578|ENST00000261588|KATNIP ENSG00000047578|ENST00000261588|KATNIP ENSG00000047578|ENST00000261588|KATNIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21978759765625 3 436.565342 1306.6742 -0.045966 -2.0067E-05 -0.34153 -0.0001491 -0.38749 -0.00016917 436.56527466262423 39.535 0.66592 37.13 36.823 37.489 -2.4049 54 18 4 0 0 0 0.65934 1 7011 7011 0.0059557 0.0045745 1 7471100 9173 1216 5831 5835 9328 9328 0.03312606055260403 EARDLHCL 8 Unmodified _EARDLHCL_ 0 0 0 ENSG00000099860|ENST00000215631|GADD45B;ENST00000592937.1_1_19:2476862-2477408:+|nuORF ENSG00000099860|ENST00000215631|GADD45B ENSG00000099860|ENST00000215631|GADD45B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7327575683594 2 478.734551 955.45455 NaN NaN NaN NaN NaN NaN NaN 95.144 1 91.094 90.594 91.594 -4.0496 0 0 0 0.23025 1 18647 18647 1.7423 1.4908 1 9174 1905 5832 5836 9329 9329 -0.02495916156851763 EARDREPA 8 Unmodified _EARDREPA_ 0 0 0 REV__ENST00000605275.1_1_9:34646808-34647045:+|nuORF REV__ENST00000605275.1_1_9:34646808-34647045:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.13409423828125 3 315.157912 942.451907 NaN NaN NaN NaN NaN NaN NaN 53.441 1 50.346 49.846 50.846 -3.0954 0 0 0 0.21486 1 9875 9875 1.6526 0 1 + 9175 23448 5833 5837 9330 9330 -0.021620482901539617 EAREDLQP 8 Unmodified _EAREDLQP_ 0 0 0 ENST00000578730.1_1_4:1243843-1244044:+|nuORF;ENST00000507044.1_1_4:1243264-1244044:+|nuORF ENST00000578730.1_1_4:1243843-1244044:+|nuORF ENST00000578730.1_1_4:1243843-1244044:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74371337890625 2 479.235439 956.456324 0.40427 0.00019374 -0.34385 -0.00016479 0.060421 2.8956E-05 479.2352130987564 29.063 0.72811 27.067 26.763 27.491 -1.9962 35 20 2 0 0 0 0.98676 1 4939 4939 6.7232 0 1 1093700 9176 10689 5834 5838 9331 9331 -0.023645838672450736 EAREEKLFRIC 11 Unmodified _EAREEKLFRIC_ 0 0 0 REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.247802734375 3 465.246733 1392.71837 NaN NaN NaN NaN NaN NaN NaN 54.678 1 54.678 54.178 55.178 0 0 0 0 0.22632 1 10431 10431 3.0723 0 1 + 9177 14371 5835 5839 9332 9332 0.037718741572007275 EARELAGCL 9 Unmodified _EARELAGCL_ 0 0 0 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24273681640625 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 116.95 1 112.59 112.09 113.09 -4.3585 0 0 0 0.20155 1 22513 22513 23.148 0 1 9178 4415 5836 5840 9333 9333 -0.011950493596600609 EAREPPAPP 9 Unmodified _EAREPPAPP_ 0 0 0 ENSG00000149679|ENST00000279101|CABLES2 ENSG00000149679|ENST00000279101|CABLES2 ENSG00000149679|ENST00000279101|CABLES2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7707214355469 2 482.248349 962.482145 0.43039 0.00020756 -0.24703 -0.00011913 0.18336 8.8423E-05 482.24819372749545 29.854 1.2579 27.78 27.102 28.36 -2.0743 64 35 2 0 0 0 0.7906 1 4981 4981 13.042 6.3193 1 1340400 9179 4807 5837 5841 9334 9334 -0.0005968962495899177 EAREPPPPPP 10 Unmodified _EAREPPPPPP_ 0 0 0 REV__ENSG00000061455|ENST00000407847|PRDM6 REV__ENSG00000061455|ENST00000407847|PRDM6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7826538085938 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 27.724 1 25.728 25.228 26.228 -1.9962 0 0 0 0.22588 1 4648 4648 7.2892 1.5288 1 + 9180 14150 5838 5842 9335 9335 0.011205549548776617 EARESTCSY 9 Unmodified _EARESTCSY_ 0 0 0 ENST00000336787.5_1_15:55520896-55527041:-|nuORF ENST00000336787.5_1_15:55520896-55527041:-|nuORF ENST00000336787.5_1_15:55520896-55527041:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.68798828125 2 523.216388 1044.41822 -0.21086 -0.00011032 -3.477 -0.0018192 -3.6878 -0.0019295 523.7153735014718 77.004 0.13892 73.589 73.487 73.626 -3.4151 5 3 2 0 0 0 0.56709 1 15023 15023 0.12781 0 1 626000 9181 8811 5839 5843 9336 9336 -0.10220837844212838 EAREVTVTG 9 Unmodified _EAREVTVTG_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25091552734375 2 481.251089 960.487624 0.36212 0.00017427 -0.31154 -0.00014993 0.050575 2.4339E-05 481.25080571076177 30.179 0.34945 28.287 28.101 28.45 -1.8928 15 9 2 0 0 0 0.27986 1 5163 5163 32.786 3.7041 1 643740 9182 5009 5840 5844 9337 9337 0.005799891668630153 EAREVTVTG 9 Unmodified _EAREVTVTG_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2508850097656 2 481.251089 960.487624 0.48036 0.00023118 -0.26885 -0.00012938 0.21152 0.00010179 481.2509986329913 30.358 0.42345 28.284 28.04 28.464 -2.0743 20 11 2 0 0 0 0.44932 1 5220 5220 22.736 3.4793 1 651620 9183 5009 5840 5844 9338 9338 0.005799891668630153 EARGEGRW 8 Unmodified _EARGEGRW_ 0 0 0 nc|ENSG00000163362|Q3KP66|INAVA nc|ENSG00000163362|Q3KP66|INAVA nc|ENSG00000163362|Q3KP66|INAVA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2372131347656 2 480.73594 959.457327 -0.30372 -0.00014601 -0.80408 -0.00038655 -1.1078 -0.00053256 480.7355404277563 35.577 0.63995 33.183 32.88 33.52 -2.3938 31 17 2 0 0 0 8448 1 6607 6607 0.68139 0 1 2150600 9184 12416 5841 5845 9339 9339 -0.02402324707668413 EARGMRRR 8 Unmodified _EARGMRRR_ 0 0 0 ENST00000371475.7_2_9:140352959-140353738:-|nuORF ENST00000371475.7_2_9:140352959-140353738:-|nuORF ENST00000371475.7_2_9:140352959-140353738:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.23907470703125 3 344.526164 1030.55666 -0.10574 -3.6429E-05 -0.24812 -8.5484E-05 -0.35386 -0.00012191 344.52598009588314 42.882 0.69023 42.882 42.639 43.329 0 26 19 2 0 0 0 1.0267 1 7994 7994 3.5965 3.3606 1 864880 9185 9159 5842 5846 9340 9340 0.04260794705442095 EARGMRRR 8 Unmodified _EARGMRRR_ 0 0 0 ENST00000371475.7_2_9:140352959-140353738:-|nuORF ENST00000371475.7_2_9:140352959-140353738:-|nuORF ENST00000371475.7_2_9:140352959-140353738:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 344.526164 1030.55666 -0.29222 -0.00010068 -0.36185 -0.00012467 -0.65408 -0.00022535 344.5260111006975 45.836 0.65776 42.995 42.584 43.241 -2.8409 0.056709 -5.1676E-05 NaN 3.5965 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1147800 9186 9159 5842 5846 0.04260794705442095 EARGNPEPS 9 Unmodified _EARGNPEPS_ 0 0 0 ICAM5|p.P756Lfs*12|1|0.13|ENSG00000105376|chr19:10295378-10295378|C/-|frameshift_variant;ENSG00000105376|ENST00000221980|ICAM5 ICAM5|p.P756Lfs*12|1|0.13|ENSG00000105376|chr19:10295378-10295378|C/-|frameshift_variant ICAM5|p.P756Lfs*12|1|0.13|ENSG00000105376|chr19:10295378-10295378|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7247009277344 2 478.725238 955.435923 0.52721 0.00025239 -1.3402 -0.00064157 -0.81295 -0.00038918 478.72468561550625 30.674 0.52391 28.599 28.22 28.744 -2.0743 19 14 2 0 0 0 0.69259 1 5273 5273 6.7232 0.51738 1 412540 9187 2303 5843 5847 9341 9341 -0.043577545270409246 EARGNPSP 8 Unmodified _EARGNPSP_ 0 0 0 CNTN3|p.S585Ifs*9|1|0.05|ENSG00000113805|chr3:74302724-74302725|-/GGAAATA|frameshift_variant;CNTN3|p.S585Tfs*10|1|0.04|ENSG00000113805|chr3:74302722-74302723|-/AG|frameshift_variant;ENSG00000113805|ENST00000263665|CNTN3;CNTN3|p.Y60C|1|0.05|ENSG00000113805|chr3:74499662-74499662|T/C|missense_variant CNTN3|p.S585Ifs*9|1|0.05|ENSG00000113805|chr3:74302724-74302725|-/GGAAATA|frameshift_variant CNTN3|p.S585Ifs*9|1|0.05|ENSG00000113805|chr3:74302724-74302725|-/GGAAATA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 414.2702331542969 2 414.203941 826.39333 NaN NaN NaN NaN NaN NaN NaN 24.3 1 24.3 23.8 24.8 0 0 0 0 0.21486 1 4181 4181 7.9102 0 1 9188 599 5844 5848 9342 9342 -0.0268110486462092 EARGPCCCCRY 11 Unmodified _EARGPCCCCRY_ 0 0 0 REV__ENST00000332499.3_1_17:43226607-43226646:+|nuORF REV__ENST00000332499.3_1_17:43226607-43226646:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7636108398438 2 630.74067 1259.46679 0.57404 0.00036207 -0.5588 -0.00035246 0.015242 9.6136E-06 630.7403549341487 35.828 0.49216 33.435 33.276 33.768 -2.3938 20 13 2 0 0 0 0.80486 1 6667 6667 2.9952 0.93549 1 1729600 + 9189 20627 5845 5849 9343 9343 -0.15256707071989695 EARGPGEAGL 10 Unmodified _EARGPGEAGL_ 0 0 0 REV__ENST00000249373.7_1_7:128828715-128828973:+|nuORF REV__ENST00000249373.7_1_7:128828715-128828973:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73773193359375 2 478.743431 955.472308 1.0172 0.00048698 -1.0634 -0.00050909 -0.046183 -2.211E-05 478.74287510140675 24.51 0.79767 22.862 22.402 23.199 -1.6482 35 22 2 0 0 0 0.71097 1 4184 4184 10.074 0 1 618660 + 9190 20107 5846 5850 9344 9344 -0.007208776303286868 EARGTLSPV 9 Unmodified _EARGTLSPV_ 0 0 0 REV__ENSG00000196159|ENST00000394329|FAT4;REV__FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant REV__ENSG00000196159|ENST00000394329|FAT4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.256103515625 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 19.762 1 19.762 19.262 20.262 0 0 0 0 0.22193 1 3243 3243 17.113 3.2068 1 + 9191 19222;23527 5847 5851 9345 9345 0.030685968920806772 EARGTLSPV 9 Unmodified _EARGTLSPV_ 0 0 0 REV__ENSG00000196159|ENST00000394329|FAT4;REV__FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant REV__ENSG00000196159|ENST00000394329|FAT4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2559509277344 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 21.149 1 19.675 19.175 20.175 -1.4742 0 0 0 0.20294 1 3564 3564 22.736 3.4793 1 + 9192 19222;23527 5847 5851 9346 9346 0.030685968920806772 EARGTLSPV 9 Unmodified _EARGTLSPV_ 0 0 0 REV__ENSG00000196159|ENST00000394329|FAT4;REV__FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant REV__ENSG00000196159|ENST00000394329|FAT4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.255859375 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 21.082 1 19.697 19.197 20.197 -1.3847 0 0 0 0.22193 1 3301 3301 17.113 2.2746 1 + 9193 19222;23527 5847 5851 9347 9347 0.030685968920806772 EARHCEYY 8 Unmodified _EARHCEYY_ 0 0 0 L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|80|3|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|80|3|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|80|3|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.060791015625 3 357.48352 1069.42873 0.014886 5.3215E-06 -4.1644 -0.0014887 -4.1495 -0.0014834 357.48225848626424 44.089 0.43707 44.089 43.987 44.424 0 16 12 2 0 0 0 1.0252 1 8273 8273 3.2813 2.2098 1 1317600 9194 12038 5848 5852 9348 9348 -0.10320810399139191 EARHCEYY 8 Unmodified _EARHCEYY_ 0 0 0 L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|80|3|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|80|3|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|80|3|anti-sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.48352 1069.42873 -0.31431 -0.00011236 -1.8491 -0.00066103 -2.1634 -0.0007734 357.4827088991054 47.043 0.34019 44.202 43.972 44.313 -2.8409 0.056438 0.00092439 NaN 3.2813 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 421060 9195 12038 5848 5852 -0.10320810399139191 EARIQQME 8 Unmodified _EARIQQME_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;CNTRL|p.N1300Tfs*22|1|0.32|ENSG00000119397|chr9:121150412-121150412|C/-|frameshift_variant;CNTRL|p.K1802Sfs*9|2|0.21|ENSG00000119397|chr9:121162247-121162247|A/-|frameshift_variant;CNTRL|p.K957Rfs*16|1|0.17|ENSG00000119397|chr9:121142265-121142265|A/-|frameshift_variant nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.0599670410156 3 335.49917 1003.47568 -1.9706 -0.00066113 -1.1984 -0.00040205 -3.169 -0.0010632 335.4987634746756 17.582 0.20933 16.068 16.01 16.219 -1.5148 9 5 2 0 0 0 1.0277 1 2569 2569 0.40072 0 1 194610 9196 3073 5849 5853 9349 9349 -0.025919508479887554 EARKEEQPP 9 Unmodified _EARKEEQPP_ 0 0 0 REV__ENST00000465771.3_1_1:39330344-39338266:-|nuORF REV__ENST00000465771.3_1_1:39330344-39338266:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7744140625 2 542.275095 1082.53564 -0.054248 -2.9417E-05 0.23905 0.00012963 0.18481 0.00010022 542.2753287822608 17.131 0.38068 15.915 15.636 16.016 -1.2159 22 10 4 0 0 0 0.68435 1 2710 2710 7.2892 1.0834 1 2282300 + 9197 19660 5850 5854 9350 9350 -0.0023293691308481357 EARKEEQPP 9 Unmodified _EARKEEQPP_ 0 0 0 REV__ENST00000465771.3_1_1:39330344-39338266:-|nuORF REV__ENST00000465771.3_1_1:39330344-39338266:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.275095 1082.53564 0.24304 0.00013179 -1.1097 -0.00060174 -0.86661 -0.00046994 542.2751337919894 16.01 0.31517 16.01 15.849 16.164 0 0.11401 -0.0014289 NaN 7.2892 20 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2287900 + 9198 19660 5850 5854 -0.0023293691308481357 EARKEEQPP 9 Unmodified _EARKEEQPP_ 0 0 0 REV__ENST00000465771.3_1_1:39330344-39338266:-|nuORF REV__ENST00000465771.3_1_1:39330344-39338266:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.275095 1082.53564 -0.054248 -2.9417E-05 0.23905 0.00012963 0.18481 0.00010022 542.2753287822608 17.131 0.38068 15.915 15.636 16.016 -1.2159 0.019125 3.3793E-05 NaN 7.2892 22 10 4 NaN NaN NaN NaN 0 NaN NaN 0 2282300 + 9199 19660 5850 5854 -0.0023293691308481357 EARKEEQPP 9 Unmodified _EARKEEQPP_ 0 0 0 REV__ENST00000465771.3_1_1:39330344-39338266:-|nuORF REV__ENST00000465771.3_1_1:39330344-39338266:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.275095 1082.53564 -0.43383 -0.00023525 0.48604 0.00026357 0.052215 2.8315E-05 542.2755669434202 17.179 0.41582 15.907 15.625 16.041 -1.2722 0.010936 0.00030167 NaN 7.2892 19 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1859500 + 9200 19660 5850 5854 -0.0023293691308481357 EARKEEQPP 9 Unmodified _EARKEEQPP_ 0 0 0 REV__ENST00000465771.3_1_1:39330344-39338266:-|nuORF REV__ENST00000465771.3_1_1:39330344-39338266:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.275095 1082.53564 -1.2506 -0.00067819 0.90217 0.00048923 -0.34846 -0.00018896 542.2758316185128 17.267 0.35188 15.752 15.557 15.909 -1.5148 -0.14407 0.00075298 NaN 7.2892 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1582900 + 9201 19660 5850 5854 -0.0023293691308481357 EARKLYEA 8 Unmodified _EARKLYEA_ 0 0 0 REV__nc|ENSG00000110025|Q9NRS6-2|SNX15 REV__nc|ENSG00000110025|Q9NRS6-2|SNX15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.263916015625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 63.283 1 60.285 59.785 60.785 -2.9975 0 0 0 0.21039 1 12224 12224 16.942 3.4344 1 + 9202 15186 5851 5855 9351 9351 0.023328834091216777 EARKPKEV 8 Unmodified _EARKPKEV_ 0 0 0 REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1 REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7430419921875 2 478.779816 955.545079 0.06613 3.1661E-05 -0.44364 -0.00021241 -0.37751 -0.00018075 478.7796527207321 25.266 0.52239 23.732 23.435 23.958 -1.5342 22 14 2 0 0 0 0.40222 1 4157 4157 32.305 2.0807 1 1269900 + 9203 25263 5852 5856 9352 9352 0.0655287616308442 EARKPKEV 8 Unmodified _EARKPKEV_ 0 0 0 REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1 REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7288818359375 2 478.779816 955.545079 0.06613 3.1661E-05 -0.44364 -0.00021241 -0.37751 -0.00018075 478.7796527207321 25.266 0.52239 23.732 23.435 23.958 -1.5342 22 14 2 0 0 0 0.97174 1 4105 4105 13.906 3.0821 1 1269900 + 9204 25263 5852 5856 9353 9353 0.0655287616308442 EARKQLMIY 9 Unmodified _EARKQLMIY_ 0 0 0 nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.316650390625 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 40.759 1 38.22 37.72 38.72 -2.5398 0 0 0 0.23508 1 7309 7309 7.2892 0.56607 1 9205 5559 5853 5857 9354 9354 0.047580475252971155 EARKQLMIY 9 Unmodified _EARKQLMIY_ 0 0 0 nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3140258789062 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 35.391 1 33.114 32.614 33.614 -2.2766 0 0 0 0.23508 1 6220 6220 4.756 0.42677 1 9206 5559 5853 5857 9355 9355 0.047580475252971155 EARKRALAR 9 Unmodified _EARKRALAR_ 0 0 0 ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3 ENSG00000130363|ENST00000367069|RSPH3 ENSG00000130363|ENST00000367069|RSPH3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5549621582031 3 357.55623 1069.64686 NaN NaN NaN NaN NaN NaN NaN 19.543 1 18.146 17.646 18.646 -1.3966 0 0 0 0.23508 1 3224 3224 3.8763 1.5936 1 9207 3605 5854 5858 9356 9356 0.11482167305484836 EARKRLEY 8 Unmodified _EARKRLEY_ 0 0 0 nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2752075195312 2 532.795998 1063.57744 0.088566 4.7188E-05 -2.1839 -0.0011636 -2.0954 -0.0011164 532.7956633037843 115.57 0.23933 111.1 110.91 111.15 -4.4726 9 6 2 0 0 0 0.70613 1 22761 22761 13.508 0.46542 1 1103100 9208 4740 5855 5859 9357 9357 0.048196635660815446 EARKSLKRKD 10 Unmodified _EARKSLKRKD_ 0 0 0 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.10748291015625 3 410.914083 1229.72042 NaN NaN NaN NaN NaN NaN NaN 18.843 1 17.532 17.032 18.032 -1.3109 0 0 0 0.22588 1 3082 3082 1.5923 0 1 + 9209 24128 5856 5860 9358 9358 0.1147467095729553 EARKVIVPR 9 Unmodified _EARKVIVPR_ 0 0 0 tr|U7SPR2|U7SPR2_FUSNUHotDogACOT-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01870PE=4SV=1 tr|U7SPR2|U7SPR2_FUSNUHotDogACOT-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01870PE=4SV=1 tr|U7SPR2|U7SPR2_FUSNUHotDogACOT-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01870PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.07257080078125 3 356.560981 1066.66111 -0.10421 -3.7156E-05 0.097869 3.4896E-05 -0.0063381 -2.2599E-06 356.5609301597843 40.382 0.50124 40.382 40.032 40.534 0 20 13 2 0 0 0 0.88109 1 7478 7478 2.086 0 1 955490 9210 26047 5857 5861 9359 9359 0.1304481973379552 EARKVVLAW 9 Unmodified _EARKVVLAW_ 0 0 0 nc|ENSG00000146842|Q96SK2-4|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209 nc|ENSG00000146842|Q96SK2-4|TMEM209 nc|ENSG00000146842|Q96SK2-4|TMEM209 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5487976074219 3 357.881831 1070.62366 0.75399 0.00026984 -0.59817 -0.00021407 0.15582 5.5766E-05 357.8814957101759 26.908 0.1717 25.126 24.993 25.165 -1.7821 6 4 2 0 0 0 0.83265 1 4739 4739 6.6304 4.3476 1 194170 9211 4674 5858 5862 9360 9360 0.09117728468163477 EARKWLQL 8 Unmodified _EARKWLQL_ 0 0 0 ENSG00000124602|ENST00000244565|UNC5CL ENSG00000124602|ENST00000244565|UNC5CL ENSG00000124602|ENST00000244565|UNC5CL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2655639648438 2 522.303458 1042.59236 -0.17733 -9.2622E-05 3.5104 0.0018335 3.3331 0.0017409 522.8061124240259 98.134 0.52569 94.036 93.774 94.3 -4.0978 18 14 2 0 0 0 0.95284 1 19291 19291 14.582 5.2343 1 1507200 9212 3326 5859 5863 9361 9361 0.07277155434076121 EARLADSAS 9 Unmodified _EARLADSAS_ 0 0 0 REV__ENSG00000257315|ENST00000550078|ZBED6 REV__ENSG00000257315|ENST00000550078|ZBED6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2305908203125 2 460.227613 918.440674 0.42223 0.00019432 -0.43182 -0.00019874 -0.0095915 -4.4143E-06 460.2274133789789 21.675 0.68016 20.2 19.876 20.557 -1.4742 55 18 4 0 0 0 0.70121 1 3628 3628 9.3831 0 1 40193000 + 9213 19871 5860 5864 9362 9362 -0.021808703842907562 EARLDILKI 9 Unmodified _EARLDILKI_ 0 0 0 ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5 ENST00000579147.5_1_17:61906826-61909326:+|nuORF ENST00000579147.5_1_17:61906826-61909326:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5574645996094 3 357.557125 1069.64954 -1.7607 -0.00062953 -0.90686 -0.00032426 -2.6675 -0.00095379 357.55680389328415 19.023 0.31271 17.388 17.217 17.529 -1.6351 11 8 2 0 0 0 0.78323 1 2836 2836 2.4985 0.21571 1 286110 9214 1707 5861 5865 9363 9363 0.11750577919792704 EARLEALQ 8 Unmodified _EARLEALQ_ 0 0 0 REV__nc|ENSG00000196141|Q9NUQ6-2|SPATS2L REV__nc|ENSG00000196141|Q9NUQ6-2|SPATS2L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25634765625 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 27.228 1 25.446 24.946 25.946 -1.7821 0 0 0 0.043664 1 4830 4830 71.922 0 1 + 9215 19220 5862 5866 9364 9364 0.030685968920693085 EARLEALQ 8 Unmodified _EARLEALQ_ 0 0 0 REV__nc|ENSG00000196141|Q9NUQ6-2|SPATS2L REV__nc|ENSG00000196141|Q9NUQ6-2|SPATS2L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2557678222656 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 27.342 1 25.42 24.92 25.92 -1.9222 0 0 0 0.20344 1 4568 4568 22.736 0 1 + 9216 19220 5862 5866 9365 9365 0.030685968920693085 EARLHKEI 8 Unmodified _EARLHKEI_ 0 0 0 ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4 ENSG00000136875|ENST00000374198|PRPF4 ENSG00000136875|ENST00000374198|PRPF4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.99932861328125 3 332.525936 994.555979 -0.37777 -0.00012562 0.071325 2.3718E-05 -0.30645 -0.0001019 332.5259401081288 28.325 0.59337 28.325 28.042 28.635 0 26 16 2 0 0 0 1.0281 1 5070 5070 0 0 1 1074100 9217 4047 5863 5867 9366 9366 0.05848278537382612 EARLKEAQLR 10 Unmodified _EARLKEAQLR_ 0 0 0 nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF nc|ENSG00000101596|A6NHR9-2|SMCHD1 nc|ENSG00000101596|A6NHR9-2|SMCHD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3004455566406 3 405.238566 1212.69387 NaN NaN NaN NaN NaN NaN NaN 44.706 1 41.916 41.416 42.416 -2.79 0 0 0 0.22588 1 8406 8406 3.0723 1.33 1 9218 2076 5864 5868 9367 9367 0.09602982065962351 EARLLKAK 8 Unmodified _EARLLKAK_ 0 0 0 REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650695800781 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 110.55 1 106.13 105.63 106.63 -4.4231 0 0 0 0.2386 1 21788 21788 0.0082765 0 1 + 9219 18563 5865 5869 9368 9368 0.11986056922410171 EARLLPVYY 9 Unmodified _EARLLPVYY_ 0 0 0 REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2082824707031 3 375.209725 1122.60735 NaN NaN NaN NaN NaN NaN NaN 40.472 1 37.837 37.337 38.337 -2.6348 0 0 0 0.23508 1 7542 7542 2.7352 0 1 + 9220 18525 5866 5870 9369 9369 0.05094602511417179 EARLQLAA 8 Unmodified _EARLQLAA_ 0 0 0 CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant;nc|ENSG00000188596|Q96N23-2|CFAP54;ENSG00000188596|ENST00000524981|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2271728515625 2 436.253434 870.492316 0.0088864 3.8767E-06 0.1279 5.5797E-05 0.13679 5.9674E-05 436.25341923058943 52.267 0.73702 49.179 48.742 49.479 -3.0876 54 20 4 0 0 0 0.71876 1 9576 9576 11.64 3.047 1 11875000 9221 502 5867 5871 9370 9370 0.05188918100259343 EARLSALY 8 Unmodified _EARLSALY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.52655029296875 2 461.753267 921.491981 -0.16454 -7.5978E-05 1.4404 0.00066513 1.2759 0.00058915 461.75397457656175 89.282 0.30775 85.489 85.338 85.646 -3.7926 13 8 2 0 0 0 0.72565 1 17455 17455 20.454 3.5113 1 777730 9222 7253 5868 5872 9371 9371 0.02809498380418063 EARNAGLLSL 10 Unmodified _EARNAGLLSL_ 0 0 0 REV__nc|ENSG00000161888|Q8NBT2-2|SPC24 REV__nc|ENSG00000161888|Q8NBT2-2|SPC24 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.25830078125 2 522.29583 1042.57711 NaN NaN NaN NaN NaN NaN NaN 20.552 1 18.831 18.331 19.331 -1.7211 0 0 0 0.22588 1 3169 3169 3.2813 0 1 + 9223 17471 5869 5873 9372 9372 0.057522438462456194 EARNVTMETE 10 Unmodified _EARNVTMETE_ 0 0 0 ENSG00000143742|ENST00000304786|SRP9 ENSG00000143742|ENST00000304786|SRP9 ENSG00000143742|ENST00000304786|SRP9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.267822265625 2 590.269152 1178.52375 NaN NaN NaN NaN NaN NaN NaN 36.497 1 34.149 33.649 34.649 -2.3479 0 0 0 0.22588 1 6454 6454 5.7319 0 1 9224 4513 5870 5874 9373 9373 -0.05836921718605481 EARPESGGPG 10 Unmodified _EARPESGGPG_ 0 0 0 REV__ENST00000337120.9_2_16:28875348-28875633:+|nuORF REV__ENST00000337120.9_2_16:28875348-28875633:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7242126464844 2 478.725238 955.435923 NaN NaN NaN NaN NaN NaN NaN 43.699 1 40.909 40.409 41.409 -2.79 0 0 0 0.22552 1 8195 8195 18.146 5.1039 1 + 9225 20672 5871 5875 9374 9374 -0.04357754527029556 EARPPSSAAA 10 Unmodified _EARPPSSAAA_ 0 0 0 REV__ENSG00000053918|ENST00000155840|KCNQ1 REV__ENSG00000053918|ENST00000155840|KCNQ1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7439880371094 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 27.397 1 25.474 24.974 25.974 -1.9222 0 0 0 0.20365 1 4579 4579 27.629 2.2295 1 + 9226 14100 5872 5876 9375 9375 -0.007208776303400555 EARPQAPSPQ 10 Unmodified _EARPQAPSPQ_ 0 0 0 REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31 REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2823486328125 2 540.775262 1079.53597 0.34537 0.00018677 1.7772 0.00096105 2.1225 0.0011478 540.7760345827056 36.805 0.42846 36.805 36.632 37.06 0 14 11 2 0 0 0 0.71097 1 6787 6787 10.074 1.3285 1 678830 + 9227 14871 5873 5877 9376 9376 -0.0006151719326226157 EARPQAPSPQ 10 Unmodified _EARPQAPSPQ_ 0 0 0 REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31 REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.775262 1079.53597 0.34537 0.00018677 1.7772 0.00096105 2.1225 0.0011478 540.7760345827056 36.805 0.42846 36.805 36.632 37.06 0 0 0 NaN 10.074 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 678830 + 9228 14871 5873 5877 -0.0006151719326226157 EARPQQLS 8 Unmodified _EARPQQLS_ 0 0 0 REV__nc|ENSG00000124782|Q92766-5|RREB1 REV__nc|ENSG00000124782|Q92766-5|RREB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650695800781 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 106.43 1 106.43 105.93 106.93 0 0 0 0 0.2325 1 20923 20923 0.12286 0 1 + 9229 15794 5874 5878 9377 9377 0.010754262322848263 EARPQQLS 8 Unmodified _EARPQQLS_ 0 0 0 REV__nc|ENSG00000124782|Q92766-5|RREB1 REV__nc|ENSG00000124782|Q92766-5|RREB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650390625 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 108.07 1 108.07 107.57 108.57 0 0 0 0 0.23584 1 21250 21250 0.12286 0 1 + 9230 15794 5874 5878 9378 9378 0.010754262322848263 EARPQQLS 8 Unmodified _EARPQQLS_ 0 0 0 REV__nc|ENSG00000124782|Q92766-5|RREB1 REV__nc|ENSG00000124782|Q92766-5|RREB1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1657409667969 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 110.85 1 106.62 106.12 107.12 -4.2289 0 0 0 0.2325 1 21331 21331 0.12286 0 1 + 9231 15794 5874 5878 9379 9379 0.010754262322848263 EARPQQMTG 9 Unmodified _EARPQQMTG_ 0 0 0 REV__ENST00000376055.8_1_20:30253807-30253882:-|nuORF REV__ENST00000376055.8_1_20:30253807-30253882:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.85833740234375 3 339.830919 1016.47093 NaN NaN NaN NaN NaN NaN NaN 28.037 1 26.04 25.54 26.54 -1.9962 0 0 0 0.19673 1 4715 4715 0.12781 0 1 + 9232 21072 5875 5879 9380 9380 -0.036648349907295596 EARPVCSGS 9 Unmodified _EARPVCSGS_ 0 0 0 ENST00000539672.1_3_12:21654239-21654503:-|nuORF ENST00000539672.1_3_12:21654239-21654503:-|nuORF ENST00000539672.1_3_12:21654239-21654503:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7538146972656 2 453.210909 904.407265 0.31244 0.0001416 1.0847 0.00049161 1.3972 0.00063321 453.21133150788324 26.076 0.96379 26.076 25.705 26.668 0 62 27 3 0 0 0 0.30681 1 4587 4587 7.4771 1.0857 1 9341300 9233 11059 5876 5880 9381 9381 -0.04876195427834773 EARPVCSGS 9 Unmodified _EARPVCSGS_ 0 0 0 ENST00000539672.1_3_12:21654239-21654503:-|nuORF ENST00000539672.1_3_12:21654239-21654503:-|nuORF ENST00000539672.1_3_12:21654239-21654503:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7687683105469 2 453.210909 904.407265 0.21146 9.5835E-05 1.2003 0.00054399 1.4118 0.00063983 453.2114531046099 27.929 0.73647 25.932 25.644 26.381 -1.9962 38 20 2 0 0 0 0.25183 1 4666 4666 34.402 2.0962 1 3179100 9234 11059 5876 5880 9382 9382 -0.04876195427834773 EARPVCSGS 9 Unmodified _EARPVCSGS_ 0 0 0 ENST00000539672.1_3_12:21654239-21654503:-|nuORF ENST00000539672.1_3_12:21654239-21654503:-|nuORF ENST00000539672.1_3_12:21654239-21654503:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 453.210909 904.407265 0.18376 8.3283E-05 1.5039 0.00068159 1.6877 0.00076488 453.21153488415365 27.728 0.84554 25.973 25.65 26.496 -1.7552 -0.012807 0.00040652 NaN 34.402 59 23 3 NaN NaN NaN NaN 0 NaN NaN 0 6915300 9235 11059 5876 5880 -0.04876195427834773 EARPVTSF 8 Unmodified _EARPVTSF_ 0 0 0 B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant;ENSG00000182272|ENST00000329962|B4GALNT4 B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76385498046875 2 453.737617 905.460681 NaN NaN NaN NaN NaN NaN NaN 67.432 1 64.323 63.823 64.823 -3.1086 0 0 0 0.21039 1 13078 13078 16.942 3.4344 1 9236 291 5877 5881 9383 9383 0.004169253463373934 EARQILKA 8 Unmodified _EARQILKA_ 0 0 0 REV__RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;REV__nc|ENSG00000187627|P0DJD0|RGPD1 REV__nc|ENSG00000187627|P0DJD0|RGPD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2567138671875 2 464.782359 927.550165 0.25687 0.00011939 -0.282 -0.00013107 -0.025125 -1.1678E-05 464.7821961916101 31.29 0.46002 29.264 29.057 29.517 -2.0264 21 12 2 0 0 0 0.97174 1 5406 5406 19.257 0 1 814910 + 9237 17140;18957 5878 5882 9384 9384 0.08349180025709302 EARQTTQQ 8 Unmodified _EARQTTQQ_ 0 0 0 REV__C3|p.A655T|1|0.42|ENSG00000125730|chr19:6707812-6707812|C/T|missense_variant REV__C3|p.A655T|1|0.42|ENSG00000125730|chr19:6707812-6707812|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23944091796875 2 481.238513 960.462472 NaN NaN NaN NaN NaN NaN NaN 47.306 1 44.356 43.856 44.856 -2.9499 0 0 0 0.23312 1 8633 8633 0.68139 0.054566 1 + 9238 13225 5879 5883 9385 9385 -0.019340656357258013 EARRHNAPD 9 Unmodified _EARRHNAPD_ 0 0 0 REV__ENST00000464356.6_2_1:156452388-156453148:-|nuORF REV__ENST00000464356.6_2_1:156452388-156453148:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2614135742188 2 533.262853 1064.51115 NaN NaN NaN NaN NaN NaN NaN 28.432 1 26.476 25.976 26.976 -1.9561 0 0 0 0.23277 1 5085 5085 13.906 2.2658 1 + 9239 21934 5880 5884 9386 9386 -0.01852152275955632 EARRKELEE 9 Unmodified _EARRKELEE_ 0 0 0 ENSG00000092054|ENST00000355349|MYH7 ENSG00000092054|ENST00000355349|MYH7 ENSG00000092054|ENST00000355349|MYH7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7165832519531 3 387.207043 1158.5993 -0.61345 -0.00023753 0.70988 0.00027487 0.096426 3.7337E-05 387.20732703131455 14.902 0.3116 13.729 13.563 13.875 -1.173 16 8 2 0 0 0 0.87918 1 2042 2042 5.2969 0 1 598520 9240 1822 5881 5885 9387 9387 0.0263442352400034 EARRPRCA 8 Unmodified _EARRPRCA_ 0 0 0 ENSG00000214193|ENST00000453908|SH3D21;SH3D21|p.H471Tfs*31|1|0.4|ENSG00000214193|chr1:36320403-36320403|C/-|frameshift_variant;ENST00000393606.7_1_17:42295651-42297108:-|nuORF ENSG00000214193|ENST00000453908|SH3D21 ENSG00000214193|ENST00000453908|SH3D21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.1708068847656 3 320.171499 957.492667 NaN NaN NaN NaN NaN NaN NaN 31.484 1 29.336 28.836 29.836 -2.1483 0 0 0 0.21486 1 5426 5426 1.6526 0 1 9241 7722 5882 5886 9388 9388 0.012220145484775458 EARRQRRQRRW 11 Unmodified _EARRQRRQRRW_ 0 0 0 ENSG00000123572|ENST00000243300|NRK;NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant;nc|ENSG00000123572|Q7Z2Y5-2|NRK ENSG00000123572|ENST00000243300|NRK ENSG00000123572|ENST00000243300|NRK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2639770507812 3 533.305078 1596.89341 0.39983 0.00021323 3.9666 0.0021154 4.3665 0.0023287 533.3071526265276 70.263 0.2802 66.796 66.707 66.988 -3.467 9 7 2 0 0 0 0.96201 1 13335 13335 2.4348 2.3514 1 1511500 9242 3274 5883 5887 9389 9389 0.11883474857086185 EARRREEER 9 Unmodified _EARRREEER_ 0 0 0 REV__TNIK|p.S560Ifs*2|1|0.05|ENSG00000154310|chr3:171128809-171128810|-/T|frameshift_variant REV__TNIK|p.S560Ifs*2|1|0.05|ENSG00000154310|chr3:171128809-171128810|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 410.87969970703125 3 410.881441 1229.62249 NaN NaN NaN NaN NaN NaN NaN 28.782 1 28.782 28.282 29.282 0 0 0 0 0.23508 1 5123 5123 2.4985 0 1 + 9243 17177 5884 5888 9390 9390 0.016868623612936062 EARRSFPSP 9 Unmodified _EARRSFPSP_ 0 0 0 REV__ENST00000505903.1_1_17:47072677-47072911:-|nuORF REV__ENST00000505903.1_1_17:47072677-47072911:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6790161132812 2 523.772522 1045.53049 NaN NaN NaN NaN NaN NaN NaN 46.808 1 43.967 43.467 44.467 -2.8409 0 0 0 0.23508 1 8831 8831 10.824 0.75 1 + 9244 22481 5885 5889 9391 9391 0.009548040149411463 EARSASASATE 11 Unmodified _EARSASASATE_ 0 0 0 REV__ENST00000262662.5_1_1:51434219-51434396:+|nuORF REV__ENST00000262662.5_1_1:51434219-51434396:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2658081054688 2 540.251817 1078.48908 0.30725 0.00016599 1.1498 0.00062118 1.4571 0.00078718 540.2524496989314 34.004 0.6572 31.857 31.532 32.189 -2.1468 44 18 3 0 0 0 0.60996 1 5987 5987 0.58532 0 1 7052300 + 9245 20201 5886 5890 9392 9392 -0.047024215350575105 EARSERDLA 9 Unmodified _EARSERDLA_ 0 0 0 REV__ENSG00000113211|ENST00000231136|PCDHB6 REV__ENSG00000113211|ENST00000231136|PCDHB6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6784057617188 2 523.764894 1045.51524 NaN NaN NaN NaN NaN NaN NaN 45.543 1 42.677 42.177 43.177 -2.8666 0 0 0 0.23508 1 8267 8267 7.9102 0 1 + 9246 15328 5887 5891 9393 9393 -0.0057010757288935565 EARSILEPD 9 Unmodified _EARSILEPD_ 0 0 0 ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1 ENST00000518683.5_1_8:87410815-87460532:+|nuORF ENST00000518683.5_1_8:87410815-87460532:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 515.2412719726562 2 515.264196 1028.51384 0.32748 0.00016874 0.098915 5.0967E-05 0.4264 0.00021971 515.2641179120839 30.304 0.35329 28.187 27.941 28.295 -2.1167 14 9 2 0 0 0 0.87258 1 5435 5435 7.9102 3.5809 1 696000 9247 3251 5888 5892 9394 9394 0.0007225833835491358 EARSSVKLHP 10 Unmodified _EARSSVKLHP_ 0 0 0 ENST00000396403.8_1_19:53996005-53996560:+|nuORF ENST00000396403.8_1_19:53996005-53996560:+|nuORF ENST00000396403.8_1_19:53996005-53996560:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2120666503906 3 375.212128 1122.61456 -0.15154 -5.6859E-05 -0.23886 -8.9623E-05 -0.3904 -0.00014648 375.21206885853184 21.837 0.41777 20.452 20.246 20.664 -1.3847 27 11 3 0 0 0 0.73195 1 3483 3483 7.9454 0.33645 1 2615100 9248 9444 5889 5893 9395 9395 0.05815335111856257 EARTKVDP 8 Unmodified _EARTKVDP_ 0 0 0 ENST00000571102.1_1_16:3018320-3020013:-|nuORF ENST00000571102.1_1_16:3018320-3020013:-|nuORF ENST00000571102.1_1_16:3018320-3020013:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2215881347656 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 41.977 1 41.977 41.477 42.477 0 0 0 0 0.10566 1 7840 7840 43.858 11.553 1 9249 11420 5890 5894 9396 9396 0.021483103750369992 EARTKVDP 8 Unmodified _EARTKVDP_ 0 0 0 ENST00000571102.1_1_16:3018320-3020013:-|nuORF ENST00000571102.1_1_16:3018320-3020013:-|nuORF ENST00000571102.1_1_16:3018320-3020013:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23895263671875 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 42.374 1 42.374 41.874 42.874 0 0 0 0 0.20761 1 7927 7927 19.257 1.1106 1 9250 11420 5890 5894 9397 9397 0.021483103750369992 EARTKVDP 8 Unmodified _EARTKVDP_ 0 0 0 ENST00000571102.1_1_16:3018320-3020013:-|nuORF ENST00000571102.1_1_16:3018320-3020013:-|nuORF ENST00000571102.1_1_16:3018320-3020013:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2387390136719 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 44.878 1 42.131 41.631 42.631 -2.7475 0 0 0 0.18734 1 8130 8130 29.082 9.8246 1 9251 11420 5890 5894 9398 9398 0.021483103750369992 EARTPEVN 8 Unmodified _EARTPEVN_ 0 0 0 sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2;sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1 sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2 sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2295837402344 2 458.230156 914.445759 0.41437 0.00018987 -0.23578 -0.00010804 0.17859 8.1833E-05 458.22999901239467 40.067 0.52924 40.067 39.895 40.424 0 20 14 2 0 0 0 0.52597 1 7433 7433 26.884 3.7352 1 1026800 9252 25755 5891 5895 9399 9399 -0.014885665216752386 EARTPEVN 8 Unmodified _EARTPEVN_ 0 0 0 sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2;sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1 sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2 sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2286071777344 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 32.902 1 32.902 32.402 33.402 0 0 0 0 0.23182 1 5992 5992 0.25148 0 1 9253 25755 5891 5895 9400 9400 -0.014885665216752386 EARTPEVN 8 Unmodified _EARTPEVN_ 0 0 0 sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2;sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1 sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2 sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2301025390625 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 108.92 1 108.92 108.42 109.42 0 0 0 0 0.23025 1 21416 21416 0.30703 0 1 9254 25755 5891 5895 9401 9401 -0.014885665216752386 EARTPTLQ 8 Unmodified _EARTPTLQ_ 0 0 0 REV__nc|ENSG00000131149|Q14687-2|GSE1 REV__nc|ENSG00000131149|Q14687-2|GSE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22747802734375 2 458.248349 914.482145 0.45211 0.00020718 -0.036121 -1.6552E-05 0.41598 0.00019062 458.248135891471 50.205 0.34344 50.205 50.061 50.405 0 12 9 2 0 0 0 0.47729 2 9496 9496;9519 29.082 6.3453 1 479620 + 9255 16057 5892 5896 9402;9403 9402 0.021483103750369992 EARTPTLQ 8 Unmodified _EARTPTLQ_ 0 0 0 REV__nc|ENSG00000131149|Q14687-2|GSE1 REV__nc|ENSG00000131149|Q14687-2|GSE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2294616699219 2 458.248349 914.482145 -0.051157 -2.3443E-05 0.47365 0.00021705 0.4225 0.00019361 458.24854597238146 53.238 0.33844 50.143 49.967 50.306 -3.0954 11 9 2 0 0 0 0.64512 1 9827 9827 19.257 3.4098 1 479060 + 9256 16057 5892 5896 9404 9404 0.021483103750369992 EARTSYGTDED 11 Unmodified _EARTSYGTDED_ 0 0 0 ENSG00000138867|ENST00000435822|GUCD1;nc|ENSG00000138867|Q96NT3|GUCD1;nc|ENSG00000138867|Q96NT3-3|GUCD1 ENSG00000138867|ENST00000435822|GUCD1 ENSG00000138867|ENST00000435822|GUCD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.75927734375 2 622.257296 1242.50004 0.73538 0.0004576 -0.13138 -8.1752E-05 0.604 0.00037585 622.2574389806318 46.34 0.48477 46.34 46.107 46.592 0 24 13 3 0 0 0 0.57511 1 8713 8713 19.362 0.10495 1 1768400 9257 4216 5893 5897 9405 9405 -0.11151063951410833 EARTSYGTDED 11 Unmodified _EARTSYGTDED_ 0 0 0 ENSG00000138867|ENST00000435822|GUCD1;nc|ENSG00000138867|Q96NT3|GUCD1;nc|ENSG00000138867|Q96NT3-3|GUCD1 ENSG00000138867|ENST00000435822|GUCD1 ENSG00000138867|ENST00000435822|GUCD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7587890625 2 622.257296 1242.50004 0.26907 0.00016743 0.59403 0.00036964 0.8631 0.00053707 622.2577150387912 49.687 0.45857 46.688 46.479 46.938 -2.999 19 12 2 0 0 0 0.91597 1 9067 9067 10.8 0 1 1990000 9258 4216 5893 5897 9406 9406 -0.11151063951410833 EARTSYGTDED 11 Unmodified _EARTSYGTDED_ 0 0 0 ENSG00000138867|ENST00000435822|GUCD1;nc|ENSG00000138867|Q96NT3|GUCD1;nc|ENSG00000138867|Q96NT3-3|GUCD1 ENSG00000138867|ENST00000435822|GUCD1 ENSG00000138867|ENST00000435822|GUCD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7810668945312 2 622.257296 1242.50004 0.12247 7.6207E-05 0.49854 0.00031022 0.62101 0.00038643 622.257743007621 49.71 0.52535 46.703 46.416 46.941 -3.0068 23 14 2 0 0 0 0.66095 1 9142 9142 14.405 2.1647 1 1599800 9259 4216 5893 5897 9407 9407 -0.11151063951410833 EARVGCPAA 9 Unmodified _EARVGCPAA_ 0 0 0 REV__ENST00000408936.7_1_9:124544949-124545033:+|nuORF REV__ENST00000408936.7_1_9:124544949-124545033:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2274169921875 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 51.503 1 48.451 47.951 48.951 -3.0517 0 0 0 0.19656 1 9491 9491 0.073264 0 1 + 9260 21398 5894 5898 9408 9408 -0.023875877026057424 EARVGCPAA 9 Unmodified _EARVGCPAA_ 0 0 0 REV__ENST00000408936.7_1_9:124544949-124545033:+|nuORF REV__ENST00000408936.7_1_9:124544949-124545033:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2168884277344 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 82.909 1 79.211 78.711 79.711 -3.6985 0 0 0 0.23508 1 15818 15818 11.64 0 1 + 9261 21398 5894 5898 9409 9409 -0.023875877026057424 EARVIRDVI 9 Unmodified _EARVIRDVI_ 0 0 0 REV__nc|ENSG00000106617|Q9UGJ0-2|PRKAG2 REV__nc|ENSG00000106617|Q9UGJ0-2|PRKAG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.548583984375 3 357.548741 1069.62439 -0.26252 -9.3863E-05 0.34601 0.00012371 0.083489 2.9851E-05 357.54879525240335 73.102 0.42534 73.102 72.816 73.241 0 17 11 2 0 0 0 0.6427 1 14202 14202 10.151 1.1743 1 977590 + 9262 15058 5895 5899 9410 9410 0.09236523117237994 EARVPARAAC 10 Unmodified _EARVPARAAC_ 0 0 0 REV__ENST00000564731.5_1_16:46761123-46772038:-|nuORF REV__ENST00000564731.5_1_16:46761123-46772038:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2717895507812 2 522.274375 1042.5342 NaN NaN NaN NaN NaN NaN NaN 28.216 1 28.216 27.716 28.716 0 0 0 0 0.22588 1 5003 5003 6.7232 1.9672 1 + 9263 16596 5896 5900 9411 9411 0.014631505171337267 EARVPCTE 8 Unmodified _EARVPCTE_ 0 0 0 REV__ENST00000574149.6_1_17:19314736-19316565:+|nuORF REV__ENST00000574149.6_1_17:19314736-19316565:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.0325622558594 3 302.144615 903.412016 NaN NaN NaN NaN NaN NaN NaN 35.253 1 32.977 32.477 33.477 -2.2766 0 0 0 0.21486 1 6194 6194 3.5965 1.9439 1 + 9264 15919 5897 5901 9412 9412 -0.04355311285087282 EARVRFQY 8 Unmodified _EARVRFQY_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5523376464844 3 356.857686 1067.55123 -0.24965 -8.909E-05 -1.1267 -0.00040206 -1.3763 -0.00049115 356.8573666752979 32.476 0.93977 32.476 31.945 32.885 0 69 26 4 0 0 0 0.82378 1 5864 5864 3.2813 0 1 4650900 + 9265 17221 5898 5902 9413 9413 0.020153943946070285 EARVTLAR 8 Unmodified _EARVTLAR_ 0 0 0 REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23638916015625 2 458.272158 914.529764 -0.04447 -2.0379E-05 0.913 0.0004184 0.86853 0.00039802 458.2725190944972 43.474 0.17348 40.726 40.591 40.765 -2.7475 6 4 2 0 0 0 8448 1 7840 7840 0.0082765 0 1 492120 + 9266 13642 5899 5903 9414 9414 0.06908009365906764 EARYYQLQ 8 Unmodified _EARYYQLQ_ 0 0 0 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5496826171875 3 357.513696 1069.51926 NaN NaN NaN NaN NaN NaN NaN 18.427 1 17.116 16.616 17.616 -1.3109 0 0 0 0.21486 1 2992 2992 5.2969 0 1 9267 4982 5900 5904 9415 9415 -0.012720180792030078 EASAEMWA 8 Oxidation (M) _EASAEM(Oxidation (M))WA_ EASAEM(1)WA EASAEM(82)WA 0 0 1 ENST00000449049.7_1_12:57624376-57624707:+|nuORF ENST00000449049.7_1_12:57624376-57624707:+|nuORF ENST00000449049.7_1_12:57624376-57624707:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.3881225585938 1 910.361109 909.353833 0.23596 0.00021481 -0.23013 -0.0002095 0.0058359 5.3128E-06 910.3610406370447 97.638 0.97382 93.54 93.254 94.228 -4.0978 61 27 3 0 0 0 0.077908 1 19199 19199 81.864 25.323 1 9864300 9268 9962 5901 5905 9416 9416 113 -0.10446992930360466 EASAEMWA 8 Oxidation (M) _EASAEM(Oxidation (M))WA_ 0 0 1 ENST00000449049.7_1_12:57624376-57624707:+|nuORF ENST00000449049.7_1_12:57624376-57624707:+|nuORF ENST00000449049.7_1_12:57624376-57624707:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 910.361109 909.353833 0.29066 0.00026461 0.29045 0.00026441 0.58111 0.00052902 910.3613031677094 93.232 0.94026 93.232 92.959 93.899 0 -0.2256 0.00030905 NaN 81.864 48 26 2 NaN NaN NaN NaN 0 NaN NaN 0 8609100 9269 9962 5901 5905 113 -0.10446992930360466 EASAEMWA 8 Oxidation (M) _EASAEM(Oxidation (M))WA_ 0 0 1 ENST00000449049.7_1_12:57624376-57624707:+|nuORF ENST00000449049.7_1_12:57624376-57624707:+|nuORF ENST00000449049.7_1_12:57624376-57624707:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 910.361109 909.353833 0.40718 0.00037068 -0.31685 -0.00028844 0.090329 8.2232E-05 910.3611772816658 97.827 1.0048 93.592 93.221 94.226 -4.2348 0.13456 -0.00024381 NaN 81.864 68 28 3 NaN NaN NaN NaN 0 NaN NaN 0 8996900 9270 9962 5901 5905 113 -0.10446992930360466 EASAEMWA 8 Oxidation (M) _EASAEM(Oxidation (M))WA_ 0 0 1 ENST00000449049.7_1_12:57624376-57624707:+|nuORF ENST00000449049.7_1_12:57624376-57624707:+|nuORF ENST00000449049.7_1_12:57624376-57624707:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 910.361109 909.353833 0.16566 0.00015081 -0.037274 -3.3932E-05 0.12838 0.00011687 910.3613634980668 97.386 1.0049 93.467 93.159 94.164 -3.9194 0.0089583 1.0705E-05 NaN 81.864 63 28 3 NaN NaN NaN NaN 0 NaN NaN 0 8898000 9271 9962 5901 5905 113 -0.10446992930360466 EASASCHGAF 10 Unmodified _EASASCHGAF_ 0 0 0 REV__ENST00000492715.1_1_X:48457171-48457486:+|nuORF REV__ENST00000492715.1_1_X:48457171-48457486:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2760009765625 2 490.200541 978.38653 0.16385 8.0321E-05 0.74993 0.00036761 0.91378 0.00044793 490.2008879373198 72.727 0.73499 72.727 72.471 73.206 0 31 20 2 0 0 0 0.91149 1 14064 14064 7.2892 3.6927 1 2818800 + 9272 22337 5902 5906 9417 9417 -0.10352785807504006 EASATLTVQ 9 Unmodified _EASATLTVQ_ 0 0 0 ENST00000484514.1_1_3:78710132-78763649:-|nuORF;ROBO1|p.F755Lfs*28|2|0.21|ENSG00000169855|chr3:78661085-78661085|A/-|frameshift_variant;ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant;ROBO1|p.R1504Sfs*40|1|0.01|ENSG00000169855|chr3:78606968-78606969|-/TGAC|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1;ENST00000488735.1_1_3:78742324-78763649:-|nuORF ENST00000484514.1_1_3:78710132-78763649:-|nuORF ENST00000484514.1_1_3:78710132-78763649:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2391357421875 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 56.776 1 53.881 53.381 54.381 -2.8944 0 0 0 0.19669 1 10886 10886 0.87518 0 1 9273 6011 5903 5907 9418 9418 0.0033318441827532297 EASATLTVQ 9 Unmodified _EASATLTVQ_ 0 0 0 ENST00000484514.1_1_3:78710132-78763649:-|nuORF;ROBO1|p.F755Lfs*28|2|0.21|ENSG00000169855|chr3:78661085-78661085|A/-|frameshift_variant;ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant;ROBO1|p.R1504Sfs*40|1|0.01|ENSG00000169855|chr3:78606968-78606969|-/TGAC|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1;ENST00000488735.1_1_3:78742324-78763649:-|nuORF ENST00000484514.1_1_3:78710132-78763649:-|nuORF ENST00000484514.1_1_3:78710132-78763649:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.231201171875 2 460.24019 918.465826 -0.11156 -5.1345E-05 2.1086 0.00097047 1.997 0.00091912 460.2399173802921 79.692 0.91512 75.887 75.406 76.321 -3.8048 36 25 3 0 0 0 0.072678 1 15149 15149 0.37959 0 1 3091600 9274 6011 5903 5907 9419 9419 0.0033318441827532297 EASAVQNYV 9 Unmodified _EASAVQNYV_ 0 0 0 ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2557678222656 2 490.737814 979.461075 -0.028904 -1.4184E-05 0.10683 5.2426E-05 0.077927 3.8241E-05 490.7378829036039 71.621 0.46338 68.372 68.129 68.593 -3.2492 14 12 2 0 0 0 0.80521 1 13942 13942 15.847 1.9411 1 784470 9275 5513 5904 5908 9420 9420 -0.02947699724472841 EASCSAGNHCS 11 Unmodified _EASCSAGNHCS_ 0 0 0 REV__nc|ENSG00000157890|A6BM72-3|MEGF11 REV__nc|ENSG00000157890|A6BM72-3|MEGF11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.271728515625 2 533.189848 1064.36514 NaN NaN NaN NaN NaN NaN NaN 148.49 1 143.34 142.84 143.84 -5.1557 0 0 0 0.2367 1 28749 28749 2.9952 0.41776 1 + 9276 17313 5905 5909 9421 9421 -0.16446538898526342 EASCSAGNHCS 11 Unmodified _EASCSAGNHCS_ 0 0 0 REV__nc|ENSG00000157890|A6BM72-3|MEGF11 REV__nc|ENSG00000157890|A6BM72-3|MEGF11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2719116210938 2 533.189848 1064.36514 NaN NaN NaN NaN NaN NaN NaN 19.758 1 18.123 17.623 18.623 -1.6351 0 0 0 0.23698 1 3001 3001 2.7352 0.15772 1 + 9277 17313 5905 5909 9422 9422 -0.16446538898526342 EASDLPLGL 9 Unmodified _EASDLPLGL_ 0 0 0 ENSG00000164256|ENST00000296682|PRDM9;ENSG00000126856|ENST00000449207|PRDM7;nc|ENSG00000126856|Q9NQW5-1|PRDM7;nc|ENSG00000126856|Q9NQW5-2|PRDM7 ENSG00000164256|ENST00000296682|PRDM9 ENSG00000164256|ENST00000296682|PRDM9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23779296875 2 457.745108 913.475663 0.11144 5.101E-05 0.1289 5.9002E-05 0.24034 0.00011001 457.7450992069584 118.16 1.1132 113.66 112.89 114.01 -4.502 54 31 2 0 0 0 0.14832 1 23240 23240 44.407 2.3125 1 2864000 9278 5526 5906 5910 9423 9423 0.015463724236610688 EASEDDYEY 9 Unmodified _EASEDDYEY_ 0 0 0 ENSG00000144451|ENST00000331683|SPAG16;nc|ENSG00000144451|Q8N0X2-5|SPAG16;SPAG16|p.F348Lfs*8|1|0.2|ENSG00000144451|chr2:213490060-213490060|T/-|frameshift_variant;SPAG16|p.N166Rfs*6|1|0.15|ENSG00000144451|chr2:213317316-213317317|-/GGGTTTATATC|frameshift_variant;nc|ENSG00000144451|Q8N0X2-4|SPAG16;SPAG16|p.N207Tfs*3|1|0.37|ENSG00000144451|chr2:213340240-213340240|A/-|frameshift_variant ENSG00000144451|ENST00000331683|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 374.1584777832031 3 374.13662 1119.38803 NaN NaN NaN NaN NaN NaN NaN 33.646 1 31.43 30.93 31.93 -2.2158 0 0 0 0.23508 1 5870 5870 2.7352 1.6637 1 9279 4554 5907 5911 9424 9424 -0.1668891802842154 EASEFDVY 8 Unmodified _EASEFDVY_ 0 0 0 REV__ENSG00000115053|ENST00000322723|NCL REV__ENSG00000115053|ENST00000322723|NCL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2530822753906 2 480.203273 958.391992 0.068579 3.2932E-05 0.26289 0.00012624 0.33147 0.00015917 480.2033351204132 96.899 0.90234 92.802 92.457 93.359 -4.0978 53 25 3 0 0 0 0.69887 1 19006 19006 14.582 1.0738 1 2391800 + 9280 15399 5908 5912 9425 9425 -0.0888678374403753 EASEFDVY 8 Unmodified _EASEFDVY_ 0 0 0 REV__ENSG00000115053|ENST00000322723|NCL REV__ENSG00000115053|ENST00000322723|NCL MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.203273 958.391992 0.068579 3.2932E-05 0.26289 0.00012624 0.33147 0.00015917 480.2033351204132 96.899 0.90234 92.802 92.457 93.359 -4.0978 -0.065559 -0.0001107 NaN 14.582 53 25 3 NaN NaN NaN NaN 0 NaN NaN 0 2391800 + 9281 15399 5908 5912 -0.0888678374403753 EASEFDVY 8 Unmodified _EASEFDVY_ 0 0 0 REV__ENSG00000115053|ENST00000322723|NCL REV__ENSG00000115053|ENST00000322723|NCL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.203273 958.391992 0.16107 7.7348E-05 0.33603 0.00016136 0.49711 0.00023871 480.20338544375744 97.164 1.0614 92.929 92.471 93.533 -4.2348 0.06183 -4.0457E-05 NaN 14.582 53 30 3 NaN NaN NaN NaN 0 NaN NaN 0 1591700 + 9282 15399 5908 5912 -0.0888678374403753 EASEFDVY 8 Unmodified _EASEFDVY_ 0 0 0 REV__ENSG00000115053|ENST00000322723|NCL REV__ENSG00000115053|ENST00000322723|NCL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.203273 958.391992 -0.083897 -4.0288E-05 0.64907 0.00031169 0.56518 0.0002714 480.2035196311275 96.79 0.96387 92.871 92.504 93.468 -3.9194 0.0037284 0.00026019 NaN 14.582 57 27 3 NaN NaN NaN NaN 0 NaN NaN 0 2832300 + 9283 15399 5908 5912 -0.0888678374403753 EASETVHLA 9 Unmodified _EASETVHLA_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7362365722656 2 478.737814 955.461075 0.17831 8.5362E-05 -0.76144 -0.00036453 -0.58314 -0.00027917 478.737667855193 32.366 0.42997 30.135 29.936 30.366 -2.2305 19 11 2 0 0 0 0.48181 1 5879 5879 4.7159 2.0847 1 1022500 9284 5117 5909 5913 9426 9426 -0.01843699724486214 EASEVREAA 9 Unmodified _EASEVREAA_ 0 0 0 REV__nc|ENSG00000230487|Q96PY0|PSMG3-AS1 REV__nc|ENSG00000230487|Q96PY0|PSMG3-AS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2334289550781 2 481.232896 960.451239 -0.015525 -7.4712E-06 -0.71097 -0.00034214 -0.7265 -0.00034961 481.23355134172544 21.041 0.45567 21.041 20.668 21.124 0 15 12 3 0 0 0 0.46882 1 3506 3506 21.537 2.175 1 343350 + 9285 21679 5910 5914 9427 9427 -0.030568877298605912 EASFFHVIE 9 Unmodified _EASFFHVIE_ 0 0 0 ENST00000311275.11_1_20:45838578-45838890:-|nuORF ENST00000311275.11_1_20:45838578-45838890:-|nuORF ENST00000311275.11_1_20:45838578-45838890:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20135498046875 3 360.178313 1077.51311 -0.25584 -9.2147E-05 0.35844 0.0001291 0.10261 3.6957E-05 360.17843025056396 20.923 0.79993 20.923 20.562 21.362 0 43 22 3 0 0 0 0.77797 1 3523 3523 2.7352 0 1 3182400 9286 8649 5911 5915 9428 9428 -0.022545363107155936 EASFQPLRRG 10 Unmodified _EASFQPLRRG_ 0 0 0 REV__ENSG00000166016|ENST00000435224|ABTB2 REV__ENSG00000166016|ENST00000435224|ABTB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7218933105469 3 387.543878 1159.60981 -0.15354 -5.9504E-05 1.1045 0.00042806 0.95101 0.00036856 387.5441975597712 31.616 0.31836 29.468 29.3 29.619 -2.1483 19 8 3 0 0 0 1.1284 1 5463 5463 0.013265 0 1 939910 + 9287 17817 5912 5916 9429 9429 0.03638450969083351 EASGDCVWKYS 11 Unmodified _EASGDCVWKYS_ 0 0 0 REV__nc|ENSG00000130164|P01130-5|LDLR REV__nc|ENSG00000130164|P01130-5|LDLR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7647705078125 2 622.766245 1243.51794 NaN NaN NaN NaN NaN NaN NaN 56.686 1 53.792 53.292 54.292 -2.8944 0 0 0 0.23018 1 10866 10866 8.1555 0 1 + 9288 24033 5913 5917 9430 9430 -0.09408020230262082 EASGIPPPLY 10 Unmodified _EASGIPPPLY_ 0 0 0 ENSG00000181778|ENST00000377311|TMEM252 ENSG00000181778|ENST00000377311|TMEM252 ENSG00000181778|ENST00000377311|TMEM252 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2608032226562 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 70.607 1 67.14 66.64 67.64 -3.467 0 0 0 0.22588 1 13373 13373 11.64 0.81637 1 9289 6741 5914 5918 9431 9431 0.013946343490943036 EASGLGLSMP 10 Unmodified _EASGLGLSMP_ 0 0 0 REV__ENST00000537898.5_1_1:210502321-210522362:+|nuORF REV__ENST00000537898.5_1_1:210502321-210522362:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2364196777344 2 481.236593 960.458632 0.14098 6.7843E-05 -0.15715 -7.5627E-05 -0.016173 -7.7831E-06 481.2365003535211 32.767 0.69718 30.537 30.259 30.956 -2.2305 22 19 2 0 0 0 0.67319 1 5943 5943 13.906 0.86358 1 569530 + 9290 22831 5915 5919 9432 9432 -0.023178714537721135 EASGLGLSMP 10 Unmodified _EASGLGLSMP_ 0 0 0 REV__ENST00000537898.5_1_1:210502321-210522362:+|nuORF REV__ENST00000537898.5_1_1:210502321-210522362:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77105712890625 2 481.236593 960.458632 0.37368 0.00017983 -0.40986 -0.00019724 -0.036181 -1.7412E-05 481.23644226214935 32.724 0.8062 30.576 30.171 30.977 -2.1483 26 22 2 0 0 0 0.32088 1 5684 5684 36.127 1.7253 1 673620 + 9291 22831 5915 5919 9433 9433 -0.023178714537721135 EASGLGLSMP 10 Unmodified _EASGLGLSMP_ 0 0 0 REV__ENST00000537898.5_1_1:210502321-210522362:+|nuORF REV__ENST00000537898.5_1_1:210502321-210522362:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77105712890625 2 481.236593 960.458632 0.37368 0.00017983 -0.40986 -0.00019724 -0.036181 -1.7412E-05 481.23644226214935 32.724 0.8062 30.576 30.171 30.977 -2.1483 26 22 2 0 0 0 0.59264 1 5684 5684 36.127 1.7253 1 673620 + 9292 22831 5915 5919 9434 9434 -0.023178714537721135 EASGRKDPP 9 Unmodified _EASGRKDPP_ 0 0 0 ENST00000392238.2_1_2:203630558-203630642:+|nuORF ENST00000392238.2_1_2:203630558-203630642:+|nuORF ENST00000392238.2_1_2:203630558-203630642:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.743896484375 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 23.306 1 21.753 21.253 22.253 -1.5532 0 0 0 0.22621 1 4015 4015 15.847 3.6065 1 9293 9371 5916 5920 9435 9435 -0.007208776303400555 EASGRSLLS 9 Unmodified _EASGRSLLS_ 0 0 0 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2;ENSG00000152527|ENST00000282406|PLEKHH2;ENST00000405223.6_1_2:43871812-43968195:+|nuORF;PLEKHH2|p.K1079Nfs*10|1|0.37|ENSG00000152527|chr2:43742753-43742753|A/-|frameshift_variant;PLEKHH2|p.Y1238Tfs*12|1|0.04|ENSG00000152527|chr2:43753676-43753677|-/ACTTCTGTTTC|frameshift_variant nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2458190917969 2 460.245806 918.47706 0.19236 8.8533E-05 -1.8181 -0.0008368 -1.6258 -0.00074826 460.2458713052185 31.68 0.35179 29.449 29.234 29.586 -2.2305 18 9 3 0 0 0 0.46882 1 5778 5778 21.537 3.3906 1 910400 9294 4929 5917 5921 9436 9436 0.014560065124328503 EASGVVVT 8 Unmodified _EASGVVVT_ 0 0 0 REV__ENST00000536613.6_1_17:37342683-37349731:-|nuORF REV__ENST00000536613.6_1_17:37342683-37349731:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2055358886719 2 381.205618 760.396684 NaN NaN NaN NaN NaN NaN NaN 50.827 1 47.945 47.445 48.445 -2.8824 0 0 0 0.21452 1 9649 9649 13.508 0 1 + 9295 22817 5918 5922 9437 9437 0.006901451893781996 EASHRNQLRY 10 Unmodified _EASHRNQLRY_ 0 0 0 ENSG00000267796|ENST00000301159|LIN37;ENST00000595455.1_1_19:36244761-36245372:+|nuORF;ENST00000587108.5_1_19:36245240-36245372:+|nuORF ENSG00000267796|ENST00000301159|LIN37 ENSG00000267796|ENST00000301159|LIN37 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2449951171875 3 425.218054 1272.63233 NaN NaN NaN NaN NaN NaN NaN 105.62 1 105.62 105.12 106.12 0 0 0 0 2.8426 1 20759 20759 0.013265 0 1 9296 7990 5919 5923 9438 9438 0.006920503667060984 EASHRNQLRY 10 Unmodified _EASHRNQLRY_ 0 0 0 ENSG00000267796|ENST00000301159|LIN37;ENST00000595455.1_1_19:36244761-36245372:+|nuORF;ENST00000587108.5_1_19:36245240-36245372:+|nuORF ENSG00000267796|ENST00000301159|LIN37 ENSG00000267796|ENST00000301159|LIN37 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24920654296875 3 425.218054 1272.63233 NaN NaN NaN NaN NaN NaN NaN 52.92 1 50.036 49.536 50.536 -2.8837 0 0 0 0.22588 1 10077 10077 8.9762 2.3459 1 9297 7990 5919 5923 9439 9439 0.006920503667060984 EASILPQSA 9 Unmodified _EASILPQSA_ 0 0 0 ENST00000423828.5_1_12:50135594-50135960:+|nuORF ENST00000423828.5_1_12:50135594-50135960:+|nuORF ENST00000423828.5_1_12:50135594-50135960:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23089599609375 2 458.242732 914.470912 -0.47622 -0.00021822 1.3083 0.00059952 0.83209 0.0003813 458.2431655603706 37.367 0.37876 34.898 34.772 35.151 -2.4688 14 10 2 0 0 0 0.57447 1 6940 6940 14.838 0.93222 1 824530 9298 9694 5920 5924 9440 9440 0.010254882809022092 EASIRGELS 9 Unmodified _EASIRGELS_ 0 0 0 ANXA6|p.P225Q|1|0.21|ENSG00000197043|chr5:151132538-151132538|G/T|missense_variant;nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6 ANXA6|p.P225Q|1|0.21|ENSG00000197043|chr5:151132538-151132538|G/T|missense_variant ANXA6|p.P225Q|1|0.21|ENSG00000197043|chr5:151132538-151132538|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2496032714844 2 481.251089 960.487624 -0.25817 -0.00012424 -1.0402 -0.00050061 -1.2984 -0.00062485 481.250401421321 39.107 0.80782 36.558 36.192 36.999 -2.5491 59 22 4 0 0 0 0.15889 1 7300 7300 2.8827 1.1404 1 4294100 9299 171 5921 5925 9441 9441 0.005799891668516466 EASITISQL 9 Unmodified _EASITISQL_ 0 0 0 REV__ENST00000443024.6_1_9:95050095-95050472:-|nuORF REV__ENST00000443024.6_1_9:95050095-95050472:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2390441894531 2 481.263665 960.512776 NaN NaN NaN NaN NaN NaN NaN 53.465 1 50.369 49.869 50.869 -3.0954 0 0 0 0.19652 1 9879 9879 0.029283 0 1 + 9300 21727 5922 5926 9442 9442 0.030940439694290944 EASKDSKPP 9 Unmodified _EASKDSKPP_ 0 0 0 nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-5|CUX1 nc|ENSG00000257923|P39880-4|CUX1 nc|ENSG00000257923|P39880-4|CUX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23236083984375 2 479.745639 957.476725 0.78172 0.00037503 -0.82726 -0.00039687 -0.045541 -2.1848E-05 479.7451897440349 23.138 0.56436 21.585 21.269 21.834 -1.5532 47 15 4 0 0 0 0.67531 1 3931 3931 7.9102 0.62092 1 11131000 9301 7948 5923 5927 9443 9443 -0.003714132074264853 EASKFHDK 8 Unmodified _EASKFHDK_ 0 0 0 PPA2-YLPM1|2|fusion;PPA2-YLPM1|1|fusion;PPA2-YLPM1|3|fusion PPA2-YLPM1|2|fusion PPA2-YLPM1|2|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2406921386719 2 481.240524 960.466495 0.052696 2.5359E-05 0.80521 0.0003875 0.8579 0.00041286 481.2408169113099 24.601 0.31108 23.067 22.884 23.195 -1.5342 13 8 2 0 0 0 0.59076 1 4022 4022 22.736 0 1 814170 9302 12816 5924 5928 9444 9444 -0.015319761420073519 EASKTGHKRK 10 Unmodified _EASKTGHKRK_ 0 0 0 REV__nc|ENSG00000007264|P42679-3|MATK REV__nc|ENSG00000007264|P42679-3|MATK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2198486328125 3 381.219395 1140.63635 -0.079096 -3.0153E-05 0.15763 6.0092E-05 0.078534 2.9939E-05 381.2193961549658 25.26 0.30976 25.26 25.081 25.391 0 14 8 2 0 0 0 0.75212 1 4360 4360 5.0475 0.51865 1 808470 + 9303 13885 5925 5929 9445 9445 0.07166139860419207 EASLATNIP 9 Unmodified _EASLATNIP_ 0 0 0 REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2347717285156 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 28.993 1 27.238 26.738 27.738 -1.7552 0 0 0 0.23508 1 4915 4915 11.64 0 1 + 9304 13356 5926 5930 9446 9446 0.010254882808908405 EASLKGQQT 9 Unmodified _EASLKGQQT_ 0 0 0 REV__nc|ENSG00000089250|P29475-2|NOS1 REV__nc|ENSG00000089250|P29475-2|NOS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24957275390625 2 481.251089 960.487624 0.04405 2.1199E-05 -2.0114 -0.00096798 -1.9673 -0.00094678 481.2500217451735 36.651 0.63965 36.651 36.248 36.887 0 28 17 2 0 0 0 0.25976 1 6718 6718 0.87518 0.19379 1 3615800 + 9305 14528 5927 5931 9447 9447 0.005799891668516466 EASLKRKAE 9 Unmodified _EASLKRKAE_ 0 0 0 ENST00000473067.1_1_2:37315561-37321362:+|nuORF;nc|ENSG00000152133|Q8N954-2|GPATCH11;ENSG00000152133|ENST00000674370|GPATCH11;nc|ENSG00000152133|Q8N954|GPATCH11 ENST00000473067.1_1_2:37315561-37321362:+|nuORF ENST00000473067.1_1_2:37315561-37321362:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.1932067871094 3 344.532979 1030.57711 0.52202 0.00017985 -0.68996 -0.00023771 -0.16794 -5.7861E-05 344.53270373885 28.316 0.31027 26.36 26.192 26.502 -1.9561 10 8 2 0 0 0 0.58921 1 5071 5071 1.2148 0.80657 1 398190 9306 4904 5928 5932 9448 9448 0.06304243846238933 EASLKRKAE 9 Unmodified _EASLKRKAE_ 0 0 0 ENST00000473067.1_1_2:37315561-37321362:+|nuORF;nc|ENSG00000152133|Q8N954-2|GPATCH11;ENSG00000152133|ENST00000674370|GPATCH11;nc|ENSG00000152133|Q8N954|GPATCH11 ENST00000473067.1_1_2:37315561-37321362:+|nuORF ENST00000473067.1_1_2:37315561-37321362:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 344.532979 1030.57711 -0.28374 -9.7759E-05 -0.28087 -9.677E-05 -0.56462 -0.00019453 344.53290157739593 26.538 0.38031 26.538 26.392 26.773 0 0.12917 -0.00012663 NaN 1.2148 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 466700 9307 4904 5928 5932 0.06304243846238933 EASLKRKAE 9 Unmodified _EASLKRKAE_ 0 0 0 ENST00000473067.1_1_2:37315561-37321362:+|nuORF;nc|ENSG00000152133|Q8N954-2|GPATCH11;ENSG00000152133|ENST00000674370|GPATCH11;nc|ENSG00000152133|Q8N954|GPATCH11 ENST00000473067.1_1_2:37315561-37321362:+|nuORF ENST00000473067.1_1_2:37315561-37321362:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 344.532979 1030.57711 -0.38052 -0.0001311 0.32795 0.00011299 -0.052573 -1.8113E-05 344.5330469247597 28.349 0.4194 26.353 26.099 26.519 -1.9962 -0.056142 0.00050265 NaN 1.2148 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 336910 9308 4904 5928 5932 0.06304243846238933 EASLLLDL 8 Unmodified _EASLLLDL_ 0 0 0 REV__GFRA1|p.P177Rfs*68|1|0.28|ENSG00000151892|chr10:116125461-116125461|G/-|frameshift_variant REV__GFRA1|p.P177Rfs*68|1|0.28|ENSG00000151892|chr10:116125461-116125461|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.216064453125 2 437.250026 872.485499 NaN NaN NaN NaN NaN NaN NaN 95.976 1 92.095 91.595 92.595 -3.881 0 0 0 0.20896 1 18419 18419 18.135 0 1 + 9309 17088 5929 5933 9449 9449 0.04415560429049492 EASLRKEE 8 Unmodified _EASLRKEE_ 0 0 0 REV__nc|ENSG00000180900|Q14160-2|SCRIB REV__nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25030517578125 2 481.251089 960.487624 0.04405 2.1199E-05 -2.0114 -0.00096798 -1.9673 -0.00094678 481.2500217451735 36.651 0.63965 36.651 36.248 36.887 0 28 17 2 0 0 0 8448 1 6771 6771 0.62683 0 1 3615800 + 9310 18703 5930 5934 9450 9450 0.005799891668516466 EASLWARS 8 Unmodified _EASLWARS_ 0 0 0 REV__ENST00000463608.5_1_22:21828989-21829627:-|nuORF REV__ENST00000463608.5_1_22:21828989-21829627:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2355041503906 2 460.235242 918.45593 0.41958 0.00019311 -0.089907 -4.1378E-05 0.32967 0.00015173 460.23514948763085 41.67 0.74065 41.67 41.232 41.973 0 37 20 2 0 0 0 0.70613 1 7730 7730 13.508 0 1 1910300 + 9311 21923 5931 5935 9451 9451 -0.006559587964375169 EASLWARS 8 Unmodified _EASLWARS_ 0 0 0 REV__ENST00000463608.5_1_22:21828989-21829627:-|nuORF REV__ENST00000463608.5_1_22:21828989-21829627:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23553466796875 2 460.235242 918.45593 -0.13137 -6.0463E-05 0.35241 0.00016219 0.22104 0.00010173 460.2353966781765 44.378 0.79656 41.588 41.051 41.847 -2.79 35 22 2 0 0 0 0.64227 1 8275 8275 19.439 0 1 1821500 + 9312 21923 5931 5935 9452 9452 -0.006559587964375169 EASLWARS 8 Unmodified _EASLWARS_ 0 0 0 REV__ENST00000463608.5_1_22:21828989-21829627:-|nuORF REV__ENST00000463608.5_1_22:21828989-21829627:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2353515625 2 460.235242 918.45593 -0.080304 -3.6959E-05 0.34312 0.00015792 0.26282 0.00012096 460.23538480978965 44.307 0.83736 41.56 41.08 41.917 -2.7475 41 23 2 0 0 0 0.64227 1 7962 7962 19.439 0 1 1502300 + 9313 21923 5931 5935 9453 9453 -0.006559587964375169 EASLYKGPP 9 Unmodified _EASLYKGPP_ 0 0 0 REV__ZBED4|p.F125Lfs*16|3|0.41|ENSG00000100426|chr22:49884031-49884031|T/-|frameshift_variant REV__ZBED4|p.F125Lfs*16|3|0.41|ENSG00000100426|chr22:49884031-49884031|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24237060546875 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 78.207 1 74.441 73.941 74.941 -3.7664 0 0 0 0.19679 1 14827 14827 0.12781 0 1 + 9314 14711 5932 5936 9454 9454 0.00982078660570096 EASMCHRW 8 Unmodified _EASMCHRW_ 0 0 0 ENSG00000189320|ENST00000338588|FAM180A ENSG00000189320|ENST00000338588|FAM180A ENSG00000189320|ENST00000338588|FAM180A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 510.2138977050781 2 510.212929 1018.4113 NaN NaN NaN NaN NaN NaN NaN 69.396 1 66.217 65.717 66.717 -3.1796 0 0 0 0.22676 1 13495 13495 0.30703 0.10017 1 9315 7224 5933 5937 9455 9455 -0.09716429205775512 EASNLRNTG 9 Unmodified _EASNLRNTG_ 0 0 0 REV__ENSG00000079999|ENST00000171111|KEAP1 REV__ENSG00000079999|ENST00000171111|KEAP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24072265625 2 481.238513 960.462472 NaN NaN NaN NaN NaN NaN NaN 47.528 1 44.586 44.086 45.086 -2.9421 0 0 0 0.20699 1 8667 8667 21.537 3.1639 1 + 9316 14404 5934 5938 9456 9456 -0.019340656357144326 EASPAHPRP 9 Unmodified _EASPAHPRP_ 0 0 0 REV__ENST00000607222.1_1_1:1550975-1551155:-|nuORF REV__ENST00000607222.1_1_1:1550975-1551155:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24578857421875 2 481.246141 960.477728 -0.30752 -0.00014799 -0.36842 -0.0001773 -0.67594 -0.00032529 481.24591869732234 19.152 0.49875 17.827 17.469 17.968 -1.3251 26 13 2 0 0 0 0.40602 1 2845 2845 25.399 2.2509 1 1447400 + 9317 23470 5935 5939 9457 9457 -0.004091540478725619 EASPHLLSCS 10 Unmodified _EASPHLLSCS_ 0 0 0 REV__ENST00000460219.2_1_6:36937722-36937803:-|nuORF REV__ENST00000460219.2_1_6:36937722-36937803:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2582397460938 2 522.244949 1042.47534 NaN NaN NaN NaN NaN NaN NaN 71.45 1 68.201 67.701 68.701 -3.2492 0 0 0 0.22588 1 13911 13911 10.074 1.4806 1 + 9318 21875 5936 5940 9458 9458 -0.04419370567848091 EASPNPTSP 9 Unmodified _EASPNPTSP_ 0 0 0 PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1;PLXND1|p.S1268Qfs*34|1|0.3|ENSG00000004399|chr3:129569907-129569908|-/C|frameshift_variant;PLXND1|p.R739Q|1|0.16|ENSG00000004399|chr3:129583592-129583592|C/T|missense_variant;PLXND1|p.S804Cfs*5|1|0.07|ENSG00000004399|chr3:129575790-129575791|AG/-|frameshift_variant PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.114013671875 2 450.208889 898.403226 -0.16569 -7.4593E-05 0.20614 9.2805E-05 0.040452 1.8212E-05 450.2089626950399 22.438 0.70143 20.985 20.595 21.296 -1.4535 30 19 2 0 0 0 0.68435 1 3521 3521 7.2892 2.5332 1 846510 9319 973 5937 5941 9459 9459 -0.050039616499134354 EASPPEPP 8 Unmodified _EASPPEPP_ 0 0 0 REV__nc|ENSG00000132879|Q9H4M3-2|FBXO44 REV__nc|ENSG00000132879|Q9H4M3-2|FBXO44 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 825.3914184570312 1 823.383225 822.375948 0.13538 0.00011147 0.28334 0.0002333 0.41872 0.00034477 823.383263583715 54.183 0.80775 51.045 50.886 51.693 -3.1377 38 22 3 0 0 0 0.64227 1 10023 10023 19.439 0 1 19797000 + 9320 24042 5938 5942 9460 9460 -0.04234445190286351 EASPVSNLP 9 Unmodified _EASPVSNLP_ 0 0 0 ENSG00000141431|ENST00000269197|ASXL3;ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant;ASXL3|p.V876Cfs*59|3|0.42|ENSG00000141431|chr18:33740022-33740022|A/-|frameshift_variant ENSG00000141431|ENST00000269197|ASXL3 ENSG00000141431|ENST00000269197|ASXL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2375183105469 2 457.234907 912.455261 0.26582 0.00012154 -0.018199 -8.3212E-06 0.24762 0.00011322 457.23487050396375 34.146 1.1698 34.146 33.654 34.823 0 74 33 3 0 0 0 0.5685 1 6236 6236 15.847 0 1 2978800 9321 4362 5939 5943 9461 9461 -0.004467982361461509 EASPVSNLP 9 Unmodified _EASPVSNLP_ 0 0 0 ENSG00000141431|ENST00000269197|ASXL3;ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant;ASXL3|p.V876Cfs*59|3|0.42|ENSG00000141431|chr18:33740022-33740022|A/-|frameshift_variant ENSG00000141431|ENST00000269197|ASXL3 ENSG00000141431|ENST00000269197|ASXL3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.234907 912.455261 -0.52299 -0.00023913 0.71734 0.00032799 0.19436 8.8867E-05 457.2352145843272 36.262 1.1238 33.868 33.451 34.575 -2.3938 -0.13901 0.00029346 NaN 15.847 52 31 2 NaN NaN NaN NaN 0 NaN NaN 0 2240100 9322 4362 5939 5943 -0.004467982361461509 EASQHLSLY 9 Unmodified _EASQHLSLY_ 0 0 0 REV__nc|ENSG00000141258|O43147-5|SGSM2 REV__nc|ENSG00000141258|O43147-5|SGSM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.685791015625 2 524.258914 1046.50327 -0.37413 -0.00019614 1.1708 0.00061379 0.79664 0.00041765 524.2594908667643 62.017 0.46075 58.648 58.32 58.781 -3.3694 17 12 2 0 0 0 0.81703 1 11570 11570 10.074 0 1 768070 + 9323 16616 5940 5944 9462 9462 -0.018117243160759244 EASQTPRPSA 10 Unmodified _EASQTPRPSA_ 0 0 0 nc|ENSG00000170374|Q8TDD2-2|SP7;ENSG00000170374|ENST00000536324|SP7 nc|ENSG00000170374|Q8TDD2-2|SP7 nc|ENSG00000170374|Q8TDD2-2|SP7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2814331054688 2 522.259445 1042.50434 NaN NaN NaN NaN NaN NaN NaN 26.751 1 25.116 24.616 25.616 -1.6347 0 0 0 0.22588 1 4451 4451 13.042 3.6593 1 9324 6064 5941 5945 9463 9463 -0.015215099471788562 EASRASKPD 9 Unmodified _EASRASKPD_ 0 0 0 GCLC|p.P414Lfs*11|1|0.25|ENSG00000001084|chr6:53505852-53505852|G/-|frameshift_variant;ENSG00000001084|ENST00000650454|GCLC GCLC|p.P414Lfs*11|1|0.25|ENSG00000001084|chr6:53505852-53505852|G/-|frameshift_variant GCLC|p.P414Lfs*11|1|0.25|ENSG00000001084|chr6:53505852-53505852|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2450866699219 2 480.740888 959.467223 -0.0017104 -8.2228E-07 0.031816 1.5295E-05 0.030106 1.4473E-05 480.74086870872117 22.753 1.3972 22.753 22.466 23.863 0 78 39 4 0 0 0 0.48644 1 4086 4086 20.454 0.039092 1 51491000 9325 953 5942 5946 9464 9464 -0.01413181492955573 EASRLEQE 8 Unmodified _EASRLEQE_ 0 0 0 ENSG00000137760|ENST00000428149|ALKBH8;nc|ENSG00000137760|Q96BT7-4|ALKBH8 ENSG00000137760|ENST00000428149|ALKBH8 ENSG00000137760|ENST00000428149|ALKBH8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2315368652344 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 18.615 1 17.29 16.79 17.79 -1.3251 0 0 0 0.21486 1 2801 2801 7.2892 0 1 9326 4104 5943 5947 9465 9465 -0.030568877298492225 EASRPRGT 8 Unmodified _EASRPRGT_ 0 0 0 ENST00000583121.5_3_17:27717493-27778530:+|nuORF ENST00000583121.5_3_17:27717493-27778530:+|nuORF ENST00000583121.5_3_17:27717493-27778530:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23016357421875 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 41.275 1 38.641 38.141 39.141 -2.6348 0 0 0 0.22692 1 7704 7704 0.25148 0 1 9327 11513 5944 5948 9466 9466 0.00510272918040755 EASRSDPPP 9 Unmodified _EASRSDPPP_ 0 0 0 ENST00000596119.5_1_19:4175573-4175816:-|nuORF;ENST00000596298.5_1_19:4175573-4182530:-|nuORF ENST00000596119.5_1_19:4175573-4175816:-|nuORF ENST00000596119.5_1_19:4175573-4175816:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7211608886719 2 478.227613 954.440674 -0.36749 -0.00017574 0.38415 0.00018371 0.016662 7.9683E-06 478.2277781739813 18.707 0.49947 17.382 17.222 17.721 -1.3251 21 13 2 0 0 0 0.40602 1 2790 2790 25.399 8.2864 1 1897700 9328 11664 5945 5949 9467 9467 -0.03836870384282065 EASSAAPAVA 10 Unmodified _EASSAAPAVA_ 0 0 0 REV__ENSG00000184867|ENST00000356824|ARMCX2 REV__ENSG00000184867|ENST00000356824|ARMCX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2192687988281 2 437.219257 872.423961 0.10578 4.6249E-05 -0.085915 -3.7564E-05 0.019865 8.6852E-06 437.21922158631816 35.655 1.2131 33.402 33.09 34.303 -2.2527 74 34 3 0 0 0 0.41835 1 6398 6398 3.5927 2.7477 1 3794300 + 9329 18919 5946 5950 9468 9468 -0.017353712702515622 EASSKLEEF 9 Unmodified _EASSKLEEF_ 0 0 0 RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant;RPRD2|p.P772Lfs*42|2|0.19|ENSG00000163125|chr1:150471259-150471259|C/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-5|RPRD2;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;RPRD2|p.T1353Pfs*60|1|0.13|ENSG00000163125|chr1:150473001-150473001|C/-|frameshift_variant;RPRD2|p.P1275Lfs*138|1|0.15|ENSG00000163125|chr1:150472768-150472768|C/-|frameshift_variant;RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant;RPRD2|p.G1389Efs*24|1|0.39|ENSG00000163125|chr1:150473110-150473110|G/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2 RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2708129882812 2 520.250754 1038.48696 -0.68327 -0.00035547 0.59533 0.00030972 -0.087934 -4.5747E-05 520.2510730353265 106.71 0.96866 102.29 101.75 102.72 -4.4121 87 27 5 0 0 0 0.54354 1 20458 20458 16.942 1.0951 1 17521000 9330 5404 5947 5951 9469 9469 -0.03074850272855656 EASSKLEEF 9 Unmodified _EASSKLEEF_ 0 0 0 RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant;RPRD2|p.P772Lfs*42|2|0.19|ENSG00000163125|chr1:150471259-150471259|C/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-5|RPRD2;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;RPRD2|p.T1353Pfs*60|1|0.13|ENSG00000163125|chr1:150473001-150473001|C/-|frameshift_variant;RPRD2|p.P1275Lfs*138|1|0.15|ENSG00000163125|chr1:150472768-150472768|C/-|frameshift_variant;RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant;RPRD2|p.G1389Efs*24|1|0.39|ENSG00000163125|chr1:150473110-150473110|G/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2 RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 520.250754 1038.48696 -0.59375 -0.0003089 0.45028 0.00023426 -0.14347 -7.464E-05 520.250948143219 106.55 0.90887 102.29 101.8 102.71 -4.2638 -0.0035247 -6.7619E-05 NaN 16.942 81 25 4 NaN NaN NaN NaN 0 NaN NaN 0 19222000 9331 5404 5947 5951 -0.03074850272855656 EASSLNQLENV 11 Unmodified _EASSLNQLENV_ 0 0 0 REV__ENSG00000136231|ENST00000258729|IGF2BP3 REV__ENSG00000136231|ENST00000258729|IGF2BP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2962646484375 2 602.296224 1202.5779 NaN NaN NaN NaN NaN NaN NaN 34.923 1 32.529 32.029 33.029 -2.3938 0 0 0 0.23379 1 6423 6423 5.2969 1.3525 1 + 9332 16318 5948 5952 9470 9470 -0.015290062953681627 EASSPISRN 9 Unmodified _EASSPISRN_ 0 0 0 ENSG00000196793|ENST00000374446|ZNF239 ENSG00000196793|ENST00000374446|ZNF239 ENSG00000196793|ENST00000374446|ZNF239 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2355651855469 2 480.740888 959.467223 -0.0017104 -8.2228E-07 0.031816 1.5295E-05 0.030106 1.4473E-05 480.74086870872117 22.753 1.3972 22.753 22.466 23.863 0 78 39 4 0 0 0 0.34411 1 4036 4036 29.082 0 1 51491000 9333 7311 5949 5953 9471 9471 -0.01413181492955573 EASSPKQPA 9 Unmodified _EASSPKQPA_ 0 0 0 REV__HDX|p.L313Rfs*2|1|0.04|ENSG00000165259|chrX:84468779-84468785|GATGCCA/-|frameshift_variant REV__HDX|p.L313Rfs*2|1|0.04|ENSG00000165259|chrX:84468779-84468785|GATGCCA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23382568359375 2 457.732532 913.45051 0.13684 6.2636E-05 -0.25604 -0.0001172 -0.1192 -5.4561E-05 457.7323962470646 31.936 0.34923 29.706 29.551 29.9 -2.2305 15 9 2 0 0 0 0.54354 1 5800 5800 16.942 0.79319 1 295990 + 9334 17749 5950 5954 9472 9472 -0.009676823789050104 EASSPKQPA 9 Unmodified _EASSPKQPA_ 0 0 0 REV__HDX|p.L313Rfs*2|1|0.04|ENSG00000165259|chrX:84468779-84468785|GATGCCA/-|frameshift_variant REV__HDX|p.L313Rfs*2|1|0.04|ENSG00000165259|chrX:84468779-84468785|GATGCCA/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.732532 913.45051 0.13684 6.2636E-05 -0.25604 -0.0001172 -0.1192 -5.4561E-05 457.7323962470646 31.936 0.34923 29.706 29.551 29.9 -2.2305 -0.04831 -0.00023303 NaN 16.942 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 295990 + 9335 17749 5950 5954 -0.009676823789050104 EASSPKQPA 9 Unmodified _EASSPKQPA_ 0 0 0 REV__HDX|p.L313Rfs*2|1|0.04|ENSG00000165259|chrX:84468779-84468785|GATGCCA/-|frameshift_variant REV__HDX|p.L313Rfs*2|1|0.04|ENSG00000165259|chrX:84468779-84468785|GATGCCA/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 457.732532 913.45051 0.22494 0.00010296 0.23688 0.00010843 0.46182 0.00021139 457.732499044713 31.829 0.31637 29.802 29.658 29.974 -2.0264 0.04831 0.00021822 NaN 16.942 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 432680 + 9336 17749 5950 5954 -0.009676823789050104 EASSSPTTAE 10 Unmodified _EASSSPTTAE_ 0 0 0 MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant;nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17;MUC17|p.G3033S|1|0.15|ENSG00000169876|chr7:101040513-101040513|G/A|missense_variant;MUC17|p.S3486Qfs*18|1|0.41|ENSG00000169876|chr7:101041869-101041870|-/C|frameshift_variant MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.274169921875 2 490.214369 978.414184 0.12433 6.0948E-05 -0.32089 -0.0001573 -0.19656 -9.6356E-05 490.2141371399552 39.224 0.1002 36.782 36.721 36.821 -2.4419 4 2 2 0 0 0 0.84281 1 7004 7004 9.3831 0 1 224240 9337 6016 5951 5955 9473 9473 -0.07588604066279458 EASSTKGRMV 10 Unmodified _EASSTKGRMV_ 0 0 0 nc|ENSG00000165271|Q9H6R4-3|NOL6 nc|ENSG00000165271|Q9H6R4-3|NOL6 nc|ENSG00000165271|Q9H6R4-3|NOL6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.270751953125 2 533.271498 1064.52844 NaN NaN NaN NaN NaN NaN NaN 17.285 1 17.285 16.785 17.785 0 0 0 0 0.22588 1 2729 2729 8.7454 0.83525 1 9338 12431 5952 5956 9474 9474 -0.0012399278516568302 EASSWGGDDEP 11 Unmodified _EASSWGGDDEP_ 0 0 0 REV__ENST00000491028.1_1_13:113745283-113749039:+|nuORF REV__ENST00000491028.1_1_13:113745283-113749039:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3359985351562 2 575.220182 1148.42581 0.50674 0.00029149 -0.91567 -0.00052671 -0.40893 -0.00023522 575.2195885186258 82.687 0.7533 82.687 82.361 83.114 0 54 21 3 0 0 0 0.75285 1 16127 16127 8.1555 0.24537 1 12906000 + 9339 15851 5953 5957 9475 9475 -0.14246407042946885 EASSWGGDDEP 11 Unmodified _EASSWGGDDEP_ 0 0 0 REV__ENST00000491028.1_1_13:113745283-113749039:+|nuORF REV__ENST00000491028.1_1_13:113745283-113749039:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.220182 1148.42581 0.50674 0.00029149 -0.91567 -0.00052671 -0.40893 -0.00023522 575.2195885186258 82.687 0.7533 82.687 82.361 83.114 0 0 0 NaN 8.1555 54 21 3 NaN NaN NaN NaN 0 NaN NaN 0 12906000 + 9340 15851 5953 5957 -0.14246407042946885 EASTRKEV 8 Unmodified _EASTRKEV_ 0 0 0 REV__ENST00000567980.5_1_16:81819579-81955027:+|nuORF REV__ENST00000567980.5_1_16:81819579-81955027:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.239990234375 2 460.245806 918.47706 0.25715 0.00011835 -0.066243 -3.0488E-05 0.1909 8.7863E-05 460.2457511785916 29.773 0.37874 29.773 29.576 29.955 0 14 10 2 0 0 0 0.70928 1 5297 5297 13.042 13.042 1 1231500 + 9341 19375 5954 5958 9476 9476 0.014560065124214816 EASTVQKHFD 10 Unmodified _EASTVQKHFD_ 0 0 0 REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3 REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7216491699219 3 387.85601 1160.5462 NaN NaN NaN NaN NaN NaN NaN 28.738 1 26.741 26.241 27.241 -1.9962 0 0 0 0.22588 1 4861 4861 3.5871 1.0886 1 + 9342 14168 5955 5959 9477 9477 -0.027649542586686948 EASTYVPL 8 Unmodified _EASTYVPL_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 440.7003479003906 2 440.226551 878.438549 NaN NaN NaN NaN NaN NaN NaN 52.686 1 49.59 49.09 50.09 -3.0954 0 0 0 0.23782 1 9731 9731 0.063987 0 1 + 9343 19081 5956 5960 9478 9478 -0.005532991220889016 EASVALDAW 9 Unmodified _EASVALDAW_ 0 0 0 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23675537109375 2 481.234907 960.455261 0.10211 4.9139E-05 -0.027805 -1.3381E-05 0.074306 3.5759E-05 481.2349575560895 19.024 1.0786 17.627 17.265 18.344 -1.3966 81 30 4 0 0 0 0.46541 1 3073 3073 21.747 0 1 12742000 9344 5207 5957 5961 9479 9479 -0.026547982361535105 EASVEVSVH 9 Unmodified _EASVEVSVH_ 0 0 0 REV__CTSB|p.E201Rfs*74|1|0.37|ENSG00000164733|chr8:11847754-11847754|C/-|frameshift_variant REV__CTSB|p.E201Rfs*74|1|0.37|ENSG00000164733|chr8:11847754-11847754|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7372741699219 2 478.737814 955.461075 0.0030207 1.4461E-06 -0.64509 -0.00030883 -0.64207 -0.00030738 478.7374090536517 47.72 1.2903 44.778 44.134 45.425 -2.9421 58 36 2 0 0 0 0.28246 1 8740 8740 1.2148 0 1 1317200 + 9345 13609 5958 5962 9480 9480 -0.018436997244634767 EASVKVNEPN 10 Unmodified _EASVKVNEPN_ 0 0 0 REV__ENSG00000142207|ENST00000382751|URB1 REV__ENSG00000142207|ENST00000382751|URB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7739868164062 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 19.237 1 17.84 17.34 18.34 -1.3966 0 0 0 0.22588 1 3162 3162 9.3831 0 1 + 9346 16660 5959 5963 9481 9481 -0.004043566329301029 EASVLGERT 9 Unmodified _EASVLGERT_ 0 0 0 nc|ENSG00000198298|Q8NCK3-2|ZNF485;ENSG00000198298|ENST00000361807|ZNF485 nc|ENSG00000198298|Q8NCK3-2|ZNF485 nc|ENSG00000198298|Q8NCK3-2|ZNF485 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25189208984375 2 481.251089 960.487624 0.039169 1.885E-05 0.39218 0.00018874 0.43135 0.00020759 481.25128374491516 28.412 0.38094 28.412 28.18 28.561 0 15 10 2 0 0 0 0.28819 1 5026 5026 32.305 0 1 1101900 9347 7441 5960 5964 9482 9482 0.0057998916687438395 EASVNKLI 8 Unmodified _EASVNKLI_ 0 0 0 REV__nc|ENSG00000101384|P78504-2|JAG1 REV__nc|ENSG00000101384|P78504-2|JAG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2281494140625 2 437.255643 872.496732 -0.10471 -4.5786E-05 -0.21586 -9.4387E-05 -0.32057 -0.00014017 437.2555203798476 79.134 0.59393 75.624 75.206 75.8 -3.5102 27 16 2 0 0 0 0.31517 1 15413 15413 36.044 0 1 1737200 + 9348 14785 5961 5965 9483 9483 0.05538382523195651 EASVPEGTK 9 Unmodified _EASVPEGTK_ 0 0 0 REV__MTHFD1|p.K596T|1|0.08|ENSG00000100714|chr14:64440238-64440238|A/C|missense_variant REV__MTHFD1|p.K596T|1|0.08|ENSG00000100714|chr14:64440238-64440238|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2355041503906 2 459.232364 916.450176 -0.31991 -0.00014691 0.46113 0.00021177 0.14123 6.4856E-05 459.23254856184354 53.882 1.146 50.998 50.42 51.566 -2.8837 97 32 4 0 0 0 0.46541 1 10338 10338 21.747 2.3076 1 193220000 + 9349 23886 5962 5966 9484 9484 -0.011391020987616685 EASVQVLAS 9 Unmodified _EASVQVLAS_ 0 0 0 REV__ENST00000493224.5_1_1:153963248-153963386:+|nuORF REV__ENST00000493224.5_1_1:153963248-153963386:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7471923828125 2 452.242732 902.470912 -0.047352 -2.1414E-05 0.0098326 4.4467E-06 -0.037519 -1.6968E-05 452.2427074094974 40.042 0.92431 37.502 37.075 37.999 -2.5398 85 25 5 0 0 0 0.59228 1 7114 7114 13.615 0.5724 1 72388000 + 9350 22345 5963 5967 9485 9485 0.015774882809068913 EASVRFHY 8 Unmodified _EASVRFHY_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 504.7476806640625 2 504.748516 1007.48248 NaN NaN NaN NaN NaN NaN NaN 41.169 1 38.68 38.18 39.18 -2.4896 0 0 0 0.21486 1 7384 7384 5.7604 0.52976 1 + 9351 17221 5964 5968 9486 9486 -0.020962699050983247 EASVRLLQ 8 Unmodified _EASVRLLQ_ 0 0 0 ENST00000549336.5_1_12:48237153-48237348:-|nuORF ENST00000549336.5_1_12:48237153-48237348:-|nuORF ENST00000549336.5_1_12:48237153-48237348:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2221984863281 2 458.266542 914.51853 NaN NaN NaN NaN NaN NaN NaN 102.32 1 98.131 97.631 98.631 -4.1861 0 0 0 0.21452 1 20108 20108 13.508 1.8676 1 9352 11162 5965 5969 9487 9487 0.05785187271760606 EASVVLKNVK 10 Unmodified _EASVVLKNVK_ 0 0 0 REV__tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1 REV__tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7835693359375 2 543.829506 1085.64446 NaN NaN NaN NaN NaN NaN NaN 17.551 1 17.551 17.051 18.051 0 0 0 0 0.22588 1 2785 2785 9.3831 1.7742 1 + 9353 25339 5966 5970 9488 9488 0.10506274057183873 EASVWIDAA 9 Unmodified _EASVWIDAA_ 0 0 0 ENSG00000142319|ENST00000270349|SLC6A3;SLC6A3|p.Y370Vfs*68|1|0.4|ENSG00000142319|chr5:1414739-1414740|-/C|frameshift_variant ENSG00000142319|ENST00000270349|SLC6A3 ENSG00000142319|ENST00000270349|SLC6A3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2339172363281 2 481.234907 960.455261 -0.06568 -3.1608E-05 0.31973 0.00015387 0.25405 0.00012226 481.23514919133453 17.836 0.81705 17.836 17.378 18.195 0 63 22 4 0 0 0 0.042631 1 2852 2852 74.423 16.951 1 16072000 9354 4414 5967 5971 9489 9489 -0.02654798236142142 EASVWIDAA 9 Unmodified _EASVWIDAA_ 0 0 0 ENSG00000142319|ENST00000270349|SLC6A3;SLC6A3|p.Y370Vfs*68|1|0.4|ENSG00000142319|chr5:1414739-1414740|-/C|frameshift_variant ENSG00000142319|ENST00000270349|SLC6A3 ENSG00000142319|ENST00000270349|SLC6A3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2340393066406 2 481.234907 960.455261 0.10211 4.9139E-05 -0.027805 -1.3381E-05 0.074306 3.5759E-05 481.2349575560895 19.024 1.0786 17.627 17.265 18.344 -1.3966 81 30 4 0 0 0 0.042631 1 3122 3122 74.423 15.744 1 12742000 9355 4414 5967 5971 9490 9490 -0.02654798236142142 EASWNTSY 8 Unmodified _EASWNTSY_ 0 0 0 REV__nc|ENSG00000099250|O14786-3|NRP1 REV__nc|ENSG00000099250|O14786-3|NRP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7442321777344 2 479.201064 956.387576 0.52656 0.00025233 -0.27914 -0.00013376 0.24742 0.00011857 479.20078181943404 21.666 0.2871 20.191 20.052 20.34 -1.4742 12 7 2 0 0 0 1.0249 1 3665 3665 5.7604 0 1 479980 + 9356 14630 5968 5972 9491 9491 -0.09236248166962469 EATAAAIK 8 Unmodified _EATAAAIK_ 0 0 0 nc|ENSG00000155085|Q5TCS8-3|AK9;AK9|p.R1209Gfs*39|2|0.33|ENSG00000155085|chr6:109529019-109529019|T/-|frameshift_variant;nc|ENSG00000155085|Q5TCS8-6|AK9;ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-1|AK9 nc|ENSG00000155085|Q5TCS8-3|AK9 nc|ENSG00000155085|Q5TCS8-3|AK9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7215576171875 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 40.207 1 40.207 39.707 40.707 0 0 0 0 0.21486 1 7476 7476 2.5775 0 1 9357 109 5969 5973 9492 9492 0.03254137943315527 EATAADVEAY 10 Unmodified _EATAADVEAY_ 0 0 0 ENSG00000165194|ENST00000373034|PCDH19;nc|ENSG00000165194|Q8TAB3-3|PCDH19;nc|ENSG00000165194|Q8TAB3-2|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.28173828125 2 520.232561 1038.45057 0.52337 0.00027228 -0.80523 -0.00041891 -0.28186 -0.00014663 520.2320880581901 45.577 1.7738 45.577 44.99 46.764 0 195 50 6 0 0 0 0.67319 1 8534 8534 13.906 5.1606 1 129850000 9358 5606 5970 5974 9493 9493 -0.06711727169567894 EATAARGNSIP 11 Unmodified _EATAARGNSIP_ 0 0 0 ENSG00000117643|ENST00000374332|MAN1C1;ENST00000263979.7_1_1:25944342-25980780:+|nuORF ENSG00000117643|ENST00000374332|MAN1C1 ENSG00000117643|ENST00000374332|MAN1C1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7788696289062 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 43.058 1 43.058 42.558 43.558 0 0 0 0 0.1832 1 8062 8062 22.736 2.2827 1 9359 2997 5971 5975 9494 9494 0.0071846546118194965 EATAIPVQK 9 Unmodified _EATAIPVQK_ 0 0 0 REV__nc|ENSG00000166833|Q8IVL1-5|NAV2 REV__nc|ENSG00000166833|Q8IVL1-5|NAV2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7390441894531 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 50.216 1 50.216 49.716 50.716 0 0 0 0 0.19679 1 9507 9507 0.12781 0 1 + 9360 17878 5972 5976 9495 9495 0.054300540689382615 EATAIPVQK 9 Unmodified _EATAIPVQK_ 0 0 0 REV__nc|ENSG00000166833|Q8IVL1-5|NAV2 REV__nc|ENSG00000166833|Q8IVL1-5|NAV2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7388000488281 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 52.824 1 49.737 49.237 50.237 -3.0876 0 0 0 0.19679 1 9717 9717 0.12781 0 1 + 9361 17878 5972 5976 9496 9496 0.054300540689382615 EATAIPVQK 9 Unmodified _EATAIPVQK_ 0 0 0 REV__nc|ENSG00000166833|Q8IVL1-5|NAV2 REV__nc|ENSG00000166833|Q8IVL1-5|NAV2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7375793457031 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 53.168 1 50.08 49.58 50.58 -3.0876 0 0 0 0.19679 1 9785 9785 0.12781 0 1 + 9362 17878 5972 5976 9497 9497 0.054300540689382615 EATDRARP 8 Unmodified _EATDRARP_ 0 0 0 CHGA|p.G148R|1|0.33|ENSG00000100604|chr14:92931336-92931336|G/A|missense_variant CHGA|p.G148R|1|0.33|ENSG00000100604|chr14:92931336-92931336|G/A|missense_variant CHGA|p.G148R|1|0.33|ENSG00000100604|chr14:92931336-92931336|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386169433594 2 458.235773 914.456993 NaN NaN NaN NaN NaN NaN NaN 46.954 1 46.954 46.454 47.454 0 0 0 0 0.21486 1 8847 8847 11.64 0 1 9363 525 5973 5977 9498 9498 -0.0036574442752908 EATGAETWN 9 Unmodified _EATGAETWN_ 0 0 0 ENST00000358888.7_1_12:56511327-56511564:+|nuORF ENST00000358888.7_1_12:56511327-56511564:+|nuORF ENST00000358888.7_1_12:56511327-56511564:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2634582519531 2 489.711796 977.40904 0.24825 0.00012157 -0.034224 -1.676E-05 0.21403 0.00010481 489.7119898289677 36.956 0.66585 36.956 36.561 37.227 0 24 18 2 0 0 0 0.81703 1 6795 6795 10.074 0 1 668950 9364 8994 5974 5978 9499 9499 -0.08056863138233439 EATGKRFY 8 Unmodified _EATGKRFY_ 0 0 0 CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;ENSG00000016490|ENST00000394711|CLCA1;CLCA1|p.N76_V77insLLF|1|0.06|ENSG00000016490|chr1:86473481-86473482|-/CTTGTTATT|inframe_insertion CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 325.1717529296875 3 324.50302 970.48723 -0.78485 -0.00025468 0.73376 0.00023811 -0.051087 -1.6578E-05 324.5032232438049 46.305 2.0787 43.438 42.607 44.686 -2.8665 109 59 3 0 0 0 8448 1 8428 8428 2.643 1.9616 1 2187100 9365 566 5975 5979 9500 9500 0.0008061423766321241 EATGPQEAL 9 Unmodified _EATGPQEAL_ 0 0 0 ENST00000600048.1_1_19:59082132-59084077:-|nuORF;nc|ENSG00000099326|P28698-3|MZF1;ENSG00000099326|ENST00000215057|MZF1 ENST00000600048.1_1_19:59082132-59084077:-|nuORF ENST00000600048.1_1_19:59082132-59084077:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22454833984375 2 458.224539 914.434526 -0.31577 -0.0001447 0.54094 0.00024787 0.22516 0.00010317 458.2247154695287 53.461 0.69398 50.577 50.283 50.977 -2.8837 38 19 2 0 0 0 0.084379 1 10178 10178 6.4869 1.771 1 7286200 9366 1886 5976 5980 9501 9501 -0.026113886158100286 EATGPQEAL 9 Unmodified _EATGPQEAL_ 0 0 0 ENST00000600048.1_1_19:59082132-59084077:-|nuORF;nc|ENSG00000099326|P28698-3|MZF1;ENSG00000099326|ENST00000215057|MZF1 ENST00000600048.1_1_19:59082132-59084077:-|nuORF ENST00000600048.1_1_19:59082132-59084077:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2245178222656 2 458.224539 914.434526 0.0031988 1.4658E-06 0.23401 0.00010723 0.23721 0.0001087 458.224614042524 53.741 0.66636 50.653 50.321 50.988 -3.0876 33 18 2 0 0 0 0.30056 1 9949 9949 4.7159 0 1 4778800 9367 1886 5976 5980 9502 9502 -0.026113886158100286 EATIALHY 8 Unmodified _EATIALHY_ 0 0 0 tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1 tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1 tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.245361328125 2 459.239993 916.465432 -0.10257 -4.7106E-05 0.16162 7.4221E-05 0.059043 2.7115E-05 459.2399116331518 83.001 1.7227 79.303 78.212 79.935 -3.6985 133 49 4 0 0 0 0.66265 1 15706 15706 18.135 4.6271 1 48379000 9368 26434 5977 5981 9503 9503 0.0038580948909157087 EATKAGGK 8 Unmodified _EATKAGGK_ 0 0 0 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21148681640625 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 97.501 1 93.581 93.081 94.081 -3.9194 0 0 0 0.21486 1 18710 18710 5.7604 0 1 9369 4005 5978 5982 9504 9504 0.01812967283535727 EATKKKKKK 9 Unmodified _EATKKKKKK_ 0 0 0 REV__nc|ENSG00000070814|Q13428-2|TCOF1 REV__nc|ENSG00000070814|Q13428-2|TCOF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 544.6083374023438 2 544.861141 1087.70773 NaN NaN NaN NaN NaN NaN NaN 173.29 1 173.29 172.79 173.79 0 0 0 0 0.19632 1 35826 35826 0.0033805 0 1 + 9370 14268 5979 5983 9505 9505 0.1673825956509063 EATKRARPP 9 Unmodified _EATKRARPP_ 0 0 0 REV__SLC6A2|p.L25P|1|0.31|ENSG00000103546|chr16:55656768-55656768|T/C|missense_variant REV__SLC6A2|p.L25P|1|0.31|ENSG00000103546|chr16:55656768-55656768|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.7892456054688 2 513.296165 1024.57778 0.58427 0.00029991 0.42226 0.00021674 1.0065 0.00051665 513.2972166010883 102.82 1.1372 102.82 102.3 103.44 0 84 32 3 0 0 0 0.49746 1 20308 20308 2.6312 2.558 1 3539400 + 9371 24651 5980 5984 9506 9506 0.06647083285952249 EATKRARPP 9 Unmodified _EATKRARPP_ 0 0 0 REV__SLC6A2|p.L25P|1|0.31|ENSG00000103546|chr16:55656768-55656768|T/C|missense_variant REV__SLC6A2|p.L25P|1|0.31|ENSG00000103546|chr16:55656768-55656768|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 513.296165 1024.57778 -0.5243 -0.00026912 0.83669 0.00042947 0.31239 0.00016035 513.7975619619675 106.89 0.92864 102.48 102.09 103.02 -4.4121 -0.14185 0.00045926 NaN 2.6312 71 26 4 NaN NaN NaN NaN 0 NaN NaN 0 4419500 + 9372 24651 5980 5984 0.06647083285952249 EATKRARPP 9 Unmodified _EATKRARPP_ 0 0 0 REV__SLC6A2|p.L25P|1|0.31|ENSG00000103546|chr16:55656768-55656768|T/C|missense_variant REV__SLC6A2|p.L25P|1|0.31|ENSG00000103546|chr16:55656768-55656768|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 513.296165 1024.57778 0.69156 0.00035497 -0.061491 -3.1563E-05 0.63007 0.00032341 513.7967905086572 106.65 1.8654 102.56 102.19 104.06 -4.0913 -0.059405 -0.0004628 NaN 2.6312 93 53 3 NaN NaN NaN NaN 0 NaN NaN 0 4376500 + 9373 24651 5980 5984 0.06647083285952249 EATLDLQEQ 9 Unmodified _EATLDLQEQ_ 0 0 0 nc|ENSG00000170322|Q6P4R8-2|NFRKB nc|ENSG00000170322|Q6P4R8-2|NFRKB nc|ENSG00000170322|Q6P4R8-2|NFRKB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.677734375 2 523.753661 1045.49277 NaN NaN NaN NaN NaN NaN NaN 37.568 1 35.23 34.73 35.73 -2.3375 0 0 0 0.23508 1 6655 6655 6.2058 0 1 9374 12456 5981 5985 9507 9507 -0.02815751761181673 EATLDTTLP 9 Unmodified _EATLDTTLP_ 0 0 0 REV__KIAA0319L|p.I439Nfs*10|1|0.33|ENSG00000142687|chr1:35460416-35460417|-/T|frameshift_variant REV__KIAA0319L|p.I439Nfs*10|1|0.33|ENSG00000142687|chr1:35460416-35460417|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.250244140625 2 480.747847 959.481142 0.19279 9.2681E-05 -0.20359 -9.7875E-05 -0.010803 -5.1934E-06 480.74768745623453 94.654 0.69972 90.463 90.264 90.964 -4.1911 24 19 2 0 0 0 0.35443 1 18101 18101 28.487 5.3384 1 1482000 + 9375 16684 5982 5986 9508 9508 -0.00021948784524283838 EATLDTTLP 9 Unmodified _EATLDTTLP_ 0 0 0 REV__KIAA0319L|p.I439Nfs*10|1|0.33|ENSG00000142687|chr1:35460416-35460417|-/T|frameshift_variant REV__KIAA0319L|p.I439Nfs*10|1|0.33|ENSG00000142687|chr1:35460416-35460417|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23187255859375 2 480.747847 959.481142 -0.031414 -1.5102E-05 -0.13444 -6.4631E-05 -0.16585 -7.9733E-05 480.747761915466 94.506 0.732 90.659 90.392 91.124 -3.847 30 20 3 0 0 0 0.35443 1 18170 18170 28.487 1.6032 1 2127800 + 9376 16684 5982 5986 9509 9509 -0.00021948784524283838 EATLFYTEL 9 Unmodified _EATLFYTEL_ 0 0 0 nc|ENSG00000007516|O94812-7|BAIAP3;nc|ENSG00000007516|O94812-5|BAIAP3;nc|ENSG00000007516|O94812-3|BAIAP3;ENSG00000007516|ENST00000426824|BAIAP3;nc|ENSG00000007516|O94812-2|BAIAP3;nc|ENSG00000007516|O94812|BAIAP3 nc|ENSG00000007516|O94812-7|BAIAP3 nc|ENSG00000007516|O94812-7|BAIAP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77197265625 2 543.771322 1085.52809 NaN NaN NaN NaN NaN NaN NaN 146.54 1 141.54 141.04 142.04 -5 0 0 0 0.20155 1 28359 28359 23.148 6.2061 1 9377 1026 5983 5987 9510 9510 -0.011250892333919182 EATLKKLI 8 Unmodified _EATLKKLI_ 0 0 0 REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9 REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2379150390625 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 76.812 1 73.397 72.897 73.897 -3.4151 0 0 0 0.21486 1 14991 14991 10.183 0 1 + 9378 17258 5984 5988 9511 9511 0.11936118971038923 EATLKQPWN 9 Unmodified _EATLKQPWN_ 0 0 0 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7801513671875 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 40.822 1 40.822 40.322 41.322 0 0 0 0 0.13613 1 7600 7600 32.305 1.6689 1 9379 12082 5985 5989 9512 9512 0.01120554954900399 EATLKQPWN 9 Unmodified _EATLKQPWN_ 0 0 0 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7734375 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 40.831 1 40.831 40.331 41.331 0 0 0 0 0.13613 1 7603 7603 32.305 1.0371 1 9380 12082 5985 5989 9513 9513 0.01120554954900399 EATLNFLK 8 Unmodified _EATLNFLK_ 0 0 0 ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1467590332031 3 312.511404 934.512382 -0.62583 -0.00019558 0.7055 0.00022048 0.079672 2.4899E-05 312.5115247126746 41.218 0.56955 38.729 38.422 38.992 -2.4896 19 15 2 0 0 0 1.0277 1 7427 7427 0.40072 0 1 717680 9381 2920 5986 5990 9514 9514 0.04250669040243338 EATLNFLK 8 Unmodified _EATLNFLK_ 0 0 0 ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 312.511404 934.512382 -0.36868 -0.00011522 0.61608 0.00019253 0.2474 7.7315E-05 312.51156698447636 38.898 0.38443 38.898 38.675 39.059 0 0.14945 9.0407E-05 NaN 0.40072 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 488500 9382 2920 5986 5990 0.04250669040243338 EATLNFLK 8 Unmodified _EATLNFLK_ 0 0 0 ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 312.511404 934.512382 -0.4676 -0.00014613 0.66347 0.00020734 0.19587 6.121E-05 312.51152563291976 41.341 0.41347 38.706 38.468 38.881 -2.6348 -0.042205 0.00013484 NaN 0.40072 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 769100 9383 2920 5986 5990 0.04250669040243338 EATLNFLK 8 Unmodified _EATLNFLK_ 0 0 0 ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 312.511404 934.512382 -0.035823 -1.1195E-05 0.060518 1.8912E-05 0.024695 7.7174E-06 312.5113528496091 41.201 0.44789 38.661 38.455 38.903 -2.5398 -0.087572 -0.00043045 NaN 0.40072 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 610950 9384 2920 5986 5990 0.04250669040243338 EATQHELTI 9 Unmodified _EATQHELTI_ 0 0 0 ENSG00000283247|ENST00000636578|CCDC201 ENSG00000283247|ENST00000636578|CCDC201 ENSG00000283247|ENST00000636578|CCDC201 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 521.1720581054688 2 521.264196 1040.51384 0.78598 0.0004097 -0.7318 -0.00038146 0.054177 2.8241E-05 521.2637989588279 26.93 0.27511 25.148 24.926 25.202 -1.7821 10 7 2 0 0 0 0.88048 1 4772 4772 3.9444 2.2918 1 337630 9385 8054 5987 5991 9515 9515 -0.004797416616611372 EATQHELTI 9 Unmodified _EATQHELTI_ 0 0 0 ENSG00000283247|ENST00000636578|CCDC201 ENSG00000283247|ENST00000636578|CCDC201 ENSG00000283247|ENST00000636578|CCDC201 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.264196 1040.51384 0.25703 0.00013398 -0.72903 -0.00038002 -0.472 -0.00024604 521.2637947000173 25.016 0.20464 25.016 24.913 25.118 0 -0.06566 1.6976E-06 NaN 3.9444 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 321890 9386 8054 5987 5991 -0.004797416616611372 EATQIRYY 8 Unmodified _EATQIRYY_ 0 0 0 REV__ENSG00000198574|ENST00000367929|SH2D1B REV__ENSG00000198574|ENST00000367929|SH2D1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.270751953125 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 26.826 1 25.191 24.691 25.691 -1.6347 0 0 0 0.21486 1 4464 4464 9.3474 1.1919 1 + 9387 19423 5988 5992 9516 9516 -0.011194204534604069 EATQIRYY 8 Unmodified _EATQIRYY_ 0 0 0 REV__ENSG00000198574|ENST00000367929|SH2D1B REV__ENSG00000198574|ENST00000367929|SH2D1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2598266601562 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 26.875 1 25.24 24.74 25.74 -1.6347 0 0 0 0.21486 1 4471 4471 9.3474 1.1919 1 + 9388 19423 5988 5992 9517 9517 -0.011194204534604069 EATQLRGGSF 10 Unmodified _EATQLRGGSF_ 0 0 0 PFKL|p.P704Qfs*6|1|0.29|ENSG00000141959|chr21:44326177-44326177|C/-|frameshift_variant;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF PFKL|p.P704Qfs*6|1|0.29|ENSG00000141959|chr21:44326177-44326177|C/-|frameshift_variant PFKL|p.P704Qfs*6|1|0.29|ENSG00000141959|chr21:44326177-44326177|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.263427734375 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 59.202 1 55.997 55.497 56.497 -3.2052 0 0 0 0.22588 1 11055 11055 9.3831 0.78985 1 9389 4401 5989 5993 9518 9518 -0.00460919567512974 EATQPISQ 8 Unmodified _EATQPISQ_ 0 0 0 ADGRG4|p.R1598Qfs*86|1|0.06|ENSG00000156920|chrX:136348492-136348493|-/C|frameshift_variant;ADGRG4|p.N1783Kfs*3|1|0.45|ENSG00000156920|chrX:136349048-136349049|-/A|frameshift_variant;ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ADGRG4|p.D2874Rfs*16|1|0.45|ENSG00000156920|chrX:136403281-136403282|-/A|frameshift_variant;ADGRG4|p.F2955Vfs*21|1|0.32|ENSG00000156920|chrX:136405894-136405895|-/G|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4 ADGRG4|p.R1598Qfs*86|1|0.06|ENSG00000156920|chrX:136348492-136348493|-/C|frameshift_variant ADGRG4|p.R1598Qfs*86|1|0.06|ENSG00000156920|chrX:136348492-136348493|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2226257324219 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 37.858 1 35.389 34.889 35.889 -2.4688 0 0 0 0.23182 1 7001 7001 0.68139 0.42991 1 9390 80 5990 5994 9519 9519 -0.01735371270228825 EATQRITT 8 Unmodified _EATQRITT_ 0 0 0 nc|ENSG00000157554|P11308-6|ERG;ENST00000468474.5_1_21:39772286-39947633:-|nuORF;ENST00000492833.5_1_21:39767491-39817511:-|nuORF;ERG|p.R263Gfs*35|1|0.38|ENSG00000157554|chr21:38392425-38392425|G/-|frameshift_variant;nc|ENSG00000157554|P11308-5|ERG;ERG|p.P411Rfs*25|2|0.39|ENSG00000157554|chr21:38383632-38383632|G/-|frameshift_variant;ERG|p.A454Cfs*19|2|0.22|ENSG00000157554|chr21:38383504-38383505|-/A|frameshift_variant;ENSG00000157554|ENST00000288319|ERG;nc|ENSG00000157554|P11308-3|ERG nc|ENSG00000157554|P11308-6|ERG nc|ENSG00000157554|P11308-6|ERG MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2467041015625 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 37.043 1 34.695 34.195 35.195 -2.3479 0 0 0 0.21486 1 6560 6560 9.3474 0 1 9391 10169 5991 5995 9520 9520 0.01456006512410113 EATRDILVY 9 Unmodified _EATRDILVY_ 0 0 0 REV__ENSG00000165406|ENST00000453424|MARCHF8 REV__ENSG00000165406|ENST00000453424|MARCHF8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2755126953125 2 540.290214 1078.56587 0.58103 0.00031392 -0.42415 -0.00022916 0.15688 8.4762E-05 540.2898336452114 77.124 0.89651 77.124 76.91 77.806 0 36 25 3 0 0 0 0.54354 1 14985 14985 16.942 0 1 1604100 + 9392 17766 5992 5996 9521 9521 0.029734217520854145 EATRDWAL 8 Unmodified _EATRDWAL_ 0 0 0 ENST00000600059.5_1_19:48988799-49002658:-|nuORF ENST00000600059.5_1_19:48988799-49002658:-|nuORF ENST00000600059.5_1_19:48988799-49002658:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2433166503906 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 97.162 1 92.928 92.428 93.428 -4.2348 0 0 0 0.21452 1 18556 18556 13.508 0 1 9393 11697 5993 5997 9522 9522 -0.015319761420073519 EATRLPTQ 8 Unmodified _EATRLPTQ_ 0 0 0 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.228271484375 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 42.449 1 42.449 41.949 42.949 0 0 0 0 0.23025 1 7941 7941 0.063987 0 1 9394 7151 5994 5998 9523 9523 0.021483103750369992 EATRLPTQ 8 Unmodified _EATRLPTQ_ 0 0 0 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2248840332031 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 62.661 1 59.7 59.2 60.2 -2.9614 0 0 0 0.22847 1 12093 12093 1.7423 0 1 9395 7151 5994 5998 9524 9524 0.021483103750369992 EATRPPPTVR 10 Unmodified _EATRPPPTVR_ 0 0 0 nc|ENSG00000283787|A8MZF0|PRR33;ENSG00000283787|ENST00000640310|PRR33 nc|ENSG00000283787|A8MZF0|PRR33 nc|ENSG00000283787|A8MZF0|PRR33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2120666503906 3 375.212128 1122.61456 -0.25444 -9.5468E-05 -0.33799 -0.00012682 -0.59243 -0.00022229 375.21201776444997 15.831 0.41683 15.831 15.641 16.058 0 34 11 4 0 0 0 0.75917 1 2475 2475 2.8433 0.10809 1 20845000 9396 8060 5995 5999 9525 9525 0.05815335111856257 EATRVEGPG 9 Unmodified _EATRVEGPG_ 0 0 0 REV__ENSG00000165566|ENST00000515384|AMER2 REV__ENSG00000165566|ENST00000515384|AMER2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2284851074219 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 81.407 1 77.85 77.35 78.35 -3.557 0 0 0 0.19669 1 15898 15898 0.12781 0 1 + 9397 17782 5996 6000 9526 9526 -0.014885665216525013 EATRVVKL 8 Unmodified _EATRVVKL_ 0 0 0 REV__EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant REV__EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2381591796875 2 458.284734 914.554916 0.2281 0.00010454 0.027604 1.2651E-05 0.25571 0.00011719 458.28470545515063 72.376 0.75473 68.748 68.337 69.091 -3.6275 33 20 2 0 0 0 0.70613 1 13589 13589 13.508 0 1 5086800 + 9398 17061 5997 6001 9527 9527 0.09422064168484212 EATRVVKL 8 Unmodified _EATRVVKL_ 0 0 0 REV__EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant REV__EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22723388671875 2 458.284734 914.554916 NaN NaN NaN NaN NaN NaN NaN 63.26 1 59.844 59.344 60.344 -3.4158 0 0 0 0.21486 1 11815 11815 8.5933 0 1 + 9399 17061 5997 6001 9528 9528 0.09422064168484212 EATSIRRKY 9 Unmodified _EATSIRRKY_ 0 0 0 REV__ENST00000357219.3_1_6:37186200-37186806:-|nuORF REV__ENST00000357219.3_1_6:37186200-37186806:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2186279296875 3 375.212128 1122.61456 -0.17241 -6.4691E-05 -0.045655 -1.713E-05 -0.21807 -8.1821E-05 375.2120762936588 21.249 0.27546 21.249 21.087 21.362 0 12 7 2 0 0 0 0.77797 1 3552 3552 2.7352 0.64919 1 421040 + 9400 18304 5998 6002 9529 9529 0.05815335111856257 EATSKIAQ 8 Unmodified _EATSKIAQ_ 0 0 0 REV__ENSG00000140830|ENST00000268483|TXNL4B REV__ENSG00000140830|ENST00000268483|TXNL4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2439270019531 2 424.229625 846.444697 0.21658 9.1879E-05 0.119 5.0481E-05 0.33557 0.00014236 424.2296097504194 20.875 0.35691 19.401 19.24 19.597 -1.4742 22 9 3 0 0 0 0.74398 1 3490 3490 7.9102 0 1 3250600 + 9401 16598 5999 6003 9530 9530 0.015332191094216796 EATSKIAQ 8 Unmodified _EATSKIAQ_ 0 0 0 REV__ENSG00000140830|ENST00000268483|TXNL4B REV__ENSG00000140830|ENST00000268483|TXNL4B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 424.229625 846.444697 0.061501 2.6091E-05 0.39578 0.0001679 0.45728 0.00019399 424.22970961641005 19.595 0.47894 19.595 19.38 19.859 0 0.17221 -5.1135E-05 NaN 7.9102 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 5087700 + 9402 16598 5999 6003 0.015332191094216796 EATSKIAQ 8 Unmodified _EATSKIAQ_ 0 0 0 REV__ENSG00000140830|ENST00000268483|TXNL4B REV__ENSG00000140830|ENST00000268483|TXNL4B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 424.229625 846.444697 -0.25353 -0.00010756 0.72362 0.00030698 0.47008 0.00019942 424.2299639394463 20.784 0.27127 19.399 19.271 19.542 -1.3847 -0.023938 0.00022702 NaN 7.9102 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 373820 + 9403 16598 5999 6003 0.015332191094216796 EATSKIAQ 8 Unmodified _EATSKIAQ_ 0 0 0 REV__ENSG00000140830|ENST00000268483|TXNL4B REV__ENSG00000140830|ENST00000268483|TXNL4B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 424.229625 846.444697 -1.0593 -0.00044939 1.2948 0.00054928 0.23546 9.9887E-05 424.23012899903836 21.019 0.20674 19.298 19.183 19.39 -1.7211 -0.12565 0.00071162 NaN 7.9102 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 382970 + 9404 16598 5999 6003 0.015332191094216796 EATSPTKVQ 9 Unmodified _EATSPTKVQ_ 0 0 0 nc|ENSG00000117013|P56696-2|KCNQ4;ENSG00000117013|ENST00000347132|KCNQ4 nc|ENSG00000117013|P56696-2|KCNQ4 nc|ENSG00000117013|P56696-2|KCNQ4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2549743652344 2 480.753464 959.492375 0.30401 0.00014615 -0.69523 -0.00033424 -0.39123 -0.00018808 480.7529714587665 28.519 1.0496 26.764 26.211 27.26 -1.7552 42 29 2 0 0 0 0.55979 1 4842 4842 15.847 0 1 552470 9405 2971 6000 6004 9531 9531 0.011008733096218748 EATSWLSY 8 Unmodified _EATSWLSY_ 0 0 0 REV__ENST00000425050.5_1_10:109631494-109803030:-|nuORF REV__ENST00000425050.5_1_10:109631494-109803030:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7218933105469 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 99.559 1 99.559 99.059 100.06 0 0 0 0 0.2074 1 19525 19525 19.439 0 1 + 9406 21554 6001 6005 9532 9532 -0.05078487127468634 EATTAPPRPF 10 Unmodified _EATTAPPRPF_ 0 0 0 ENSG00000163251|ENST00000295417|FZD5 ENSG00000163251|ENST00000295417|FZD5 ENSG00000163251|ENST00000295417|FZD5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7830200195312 2 543.782556 1085.55056 0.28691 0.00015601 -0.17133 -9.3165E-05 0.11558 6.285E-05 543.78235821687 86.286 0.8774 86.286 85.859 86.737 0 57 24 4 0 0 0 0.47483 1 16905 16905 0.13989 0 1 6344800 9407 5410 6002 6006 9533 9533 0.01120554954900399 EATTLQGLA 9 Unmodified _EATTLQGLA_ 0 0 0 nc|ENSG00000091128|A4D0S4-2|LAMB4;ENST00000475469.1_1_7:107703197-107763609:-|nuORF;nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4 nc|ENSG00000091128|A4D0S4-2|LAMB4 nc|ENSG00000091128|A4D0S4-2|LAMB4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7473449707031 2 452.242732 902.470912 -0.093343 -4.2214E-05 0.24598 0.00011124 0.15264 6.9028E-05 452.24279141956873 54.077 0.76603 50.94 50.401 51.167 -3.1377 62 21 4 0 0 0 0.46541 1 9965 9965 21.747 5.8995 1 45820000 9408 1803 6003 6007 9534 9534 0.015774882809068913 EATTVVEWF 9 Unmodified _EATTVVEWF_ 0 0 0 ENSG00000166257|ENST00000299333|SCN3B ENSG00000166257|ENST00000299333|SCN3B ENSG00000166257|ENST00000299333|SCN3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2650146484375 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 24.272 1 22.719 22.219 23.219 -1.5532 0 0 0 0.23508 1 4220 4220 7.9102 0.62092 1 9409 5707 6004 6008 9535 9535 -0.02425956030560883 EATVLEKIY 9 Unmodified _EATVLEKIY_ 0 0 0 nc|ENSG00000163412|Q8N5X7-2|EIF4E3;ENSG00000163412|ENST00000425534|EIF4E3 nc|ENSG00000163412|Q8N5X7-2|EIF4E3 nc|ENSG00000163412|Q8N5X7-2|EIF4E3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825317382812 2 533.294965 1064.57538 0.071048 3.789E-05 2.216 0.0011818 2.2871 0.0012197 533.2963041680284 94.728 0.4136 90.847 90.64 91.054 -3.881 18 11 2 0 0 0 0.77732 1 18156 18156 12.532 1.0368 1 1116900 9410 5424 6005 6009 9536 9536 0.04567190037619184 EATVPNNKIT 10 Unmodified _EATVPNNKIT_ 0 0 0 ENSG00000111716|ENST00000350669|LDHB;ENST00000544151.1_1_12:21807353-21810687:-|nuORF ENSG00000111716|ENST00000350669|LDHB ENSG00000111716|ENST00000350669|LDHB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7922973632812 2 543.793121 1085.57169 0.44878 0.00024405 -0.5473 -0.00029762 -0.098517 -5.3573E-05 543.7928394754787 51.568 1.0498 51.568 50.848 51.898 0 41 29 2 0 0 0 0.40256 1 9662 9662 30.637 4.3684 1 6356100 9411 2640 6006 6010 9537 9537 0.032325202637593975 EATVSVFRA 9 Unmodified _EATVSVFRA_ 0 0 0 nc|ENSG00000279847|E5RJ46|LINC02906 nc|ENSG00000279847|E5RJ46|LINC02906 nc|ENSG00000279847|E5RJ46|LINC02906 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26434326171875 2 490.263999 978.513445 0.14289 7.0054E-05 -0.073015 -3.5797E-05 0.069876 3.4258E-05 490.26409947470756 52.443 0.34865 49.355 49.202 49.551 -3.0876 11 9 2 0 0 0 0.48644 1 9635 9635 20.454 1.1966 1 976390 9412 12641 6007 6011 9538 9538 0.02332883409144415 EATVSVFRA 9 Unmodified _EATVSVFRA_ 0 0 0 nc|ENSG00000279847|E5RJ46|LINC02906 nc|ENSG00000279847|E5RJ46|LINC02906 nc|ENSG00000279847|E5RJ46|LINC02906 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2650146484375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 52.487 1 49.391 48.891 49.891 -3.0954 0 0 0 0.21065 1 9688 9688 20.454 0 1 9413 12641 6007 6011 9539 9539 0.02332883409144415 EATVWKDI 8 Unmodified _EATVWKDI_ 0 0 0 ENSG00000110975|ENST00000228567|SYT10 ENSG00000110975|ENST00000228567|SYT10 ENSG00000110975|ENST00000228567|SYT10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25494384765625 2 481.2531 960.491647 0.054447 2.6203E-05 0.44289 0.00021314 0.49734 0.00023935 481.2532559292357 65.088 1.1882 62.041 61.522 62.71 -3.047 72 34 3 0 0 0 0.54916 1 12518 12518 25.399 4.9457 1 3888300 9414 2600 6008 6012 9540 9540 0.00982078660570096 EATYEGSGLR 10 Unmodified _EATYEGSGLR_ 0 0 0 REV__JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant REV__JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.27294921875 2 541.759278 1081.504 0.019877 1.0769E-05 -1.4938 -0.0008093 -1.474 -0.00079853 541.7588037026668 40.736 0.42163 38.196 38.034 38.455 -2.5398 21 11 3 0 0 0 1.1258 1 7340 7340 0.013265 0 1 1520900 + 9415 23690 6009 6013 9541 9541 -0.033489296670495605 EATYLLEQQ 9 Unmodified _EATYLLEQQ_ 0 0 0 KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7796020507812 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 132.79 1 132.79 132.29 133.29 0 0 0 0 0.23508 1 26259 26259 10.824 2.9138 1 9416 3597 6010 6014 9542 9542 -0.013868748644881634 EAVAFVVDI 9 Unmodified _EAVAFVVDI_ 0 0 0 REV__ENST00000593093.5_1_19:1272938-1273439:+|nuORF REV__ENST00000593093.5_1_19:1272938-1273439:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2455749511719 2 481.7633 961.512048 0.3147 0.00015161 -0.22959 -0.00011061 0.085108 4.1002E-05 481.76311586127576 100.46 0.61848 96.164 95.92 96.539 -4.297 37 17 3 0 0 0 0.42289 1 19268 19268 32.305 16.458 1 3679900 + 9417 23356 6011 6015 9543 9543 0.029752493203773156 EAVAKQLQR 9 Unmodified _EAVAKQLQR_ 0 0 0 REV__nc|ENSG00000058453|Q5TZA2-2|CROCC REV__nc|ENSG00000058453|Q5TZA2-2|CROCC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 348.2095031738281 3 348.204974 1041.59309 -0.76044 -0.00026479 0.30868 0.00010749 -0.45176 -0.0001573 348.20518209803026 25.767 0.24816 23.887 23.748 23.996 -1.8793 10 6 2 0 0 0 0.6215 1 4231 4231 0.073264 0 1 581730 + 9418 14129 6012 6016 9544 9544 0.073959500831279 EAVALKEN 8 Unmodified _EAVALKEN_ 0 0 0 REV__ENST00000469463.1_1_1:186321098-186322975:-|nuORF REV__ENST00000469463.1_1_1:186321098-186322975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2355651855469 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 62.035 1 58.796 58.296 59.296 -3.2395 0 0 0 0.21486 1 11623 11623 5.2307 0 1 + 9419 14063 6013 6017 9545 9545 0.019015056264606756 EAVCEEEEP 9 Unmodified _EAVCEEEEP_ 0 0 0 REV__GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant REV__GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.1442565917969 3 345.470945 1033.39101 -0.53772 -0.00018577 -3.9684 -0.001371 -4.5062 -0.0015567 345.4702158674154 94.941 0.44827 94.941 94.628 95.076 0 13 12 2 0 0 0 0.88284 1 18549 18549 0.20686 0 1 1148400 + 9420 15485 6014 6018 9546 9546 -0.12435366175236595 EAVCELCYC 9 Unmodified _EAVCELCYC_ 0 0 0 REV__SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant REV__SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.797607421875 3 344.799351 1031.37622 NaN NaN NaN NaN NaN NaN NaN 55.617 1 52.734 52.234 53.234 -2.8837 0 0 0 0.19638 1 10648 10648 0.40827 0.335 1 + 9421 15080 6015 6019 9547 9547 -0.13820852848584764 EAVEAKVPS 9 Unmodified _EAVEAKVPS_ 0 0 0 REV__ENSG00000131711|ENST00000296755|MAP1B REV__ENSG00000131711|ENST00000296755|MAP1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24859619140625 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 116.81 1 112.33 111.83 112.83 -4.486 0 0 0 0.22621 1 23029 23029 15.847 1.2655 1 + 9422 16086 6016 6020 9548 9548 0.01945774797957256 EAVELIKK 8 Unmodified _EAVELIKK_ 0 0 0 tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1 tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1 tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2472839355469 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 74.467 1 74.467 73.967 74.967 0 0 0 0 0.20294 1 14457 14457 23.148 5.0134 1 9423 26379 6017 6021 9549 9549 0.09219528591370363 EAVELIKK 8 Unmodified _EAVELIKK_ 0 0 0 tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1 tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1 tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25030517578125 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 104.67 1 100.61 100.11 101.11 -4.0543 0 0 0 0.2343 1 20130 20130 0.063987 0 1 9424 26379 6017 6021 9550 9550 0.09219528591370363 EAVELQPPP 9 Unmodified _EAVELQPPP_ 0 0 0 nc|ENSG00000146112|Q6NYC8-3|PPP1R18;ENSG00000146112|ENST00000274853|PPP1R18 nc|ENSG00000146112|Q6NYC8-3|PPP1R18 nc|ENSG00000146112|Q6NYC8-3|PPP1R18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2569580078125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 20.305 1 18.67 18.17 19.17 -1.6351 0 0 0 0.23508 1 3119 3119 8.5933 1.304 1 9425 4640 6018 6022 9551 9551 0.012100613149868877 EAVEMHLT 8 Unmodified _EAVEMHLT_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2485656738281 2 465.223485 928.432418 NaN NaN NaN NaN NaN NaN NaN 106.71 1 102.62 102.12 103.12 -4.0913 0 0 0 0.21452 1 20519 20519 13.508 4.1604 1 9426 3363 6019 6023 9552 9552 -0.03466140625266689 EAVFFQSHSV 10 Unmodified _EAVFFQSHSV_ 0 0 0 POLR2I|p.A102V|1|0.38|ENSG00000105258|chr19:36114025-36114025|G/A|missense_variant POLR2I|p.A102V|1|0.38|ENSG00000105258|chr19:36114025-36114025|G/A|missense_variant POLR2I|p.A102V|1|0.38|ENSG00000105258|chr19:36114025-36114025|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3272705078125 2 575.780013 1149.54547 0.13779 7.9339E-05 0.16968 9.7699E-05 0.30747 0.00017704 575.7800973326082 90.278 0.56428 90.278 90.015 90.58 0 23 15 2 0 0 0 0.59736 1 17681 17681 19.362 1.2156 1 3765000 9427 12812 6020 6024 9553 9553 -0.023317489077271603 EAVGALLPAS 10 Unmodified _EAVGALLPAS_ 0 0 0 ENST00000265354.5_1_6:43147153-43147468:+|nuORF ENST00000265354.5_1_6:43147153-43147468:+|nuORF ENST00000265354.5_1_6:43147153-43147468:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2481689453125 2 464.260925 926.507297 -0.15726 -7.3009E-05 0.23217 0.00010779 0.074917 3.4781E-05 464.2609884920101 111.06 1.4432 106.57 106.18 107.62 -4.4915 83 40 4 0 0 0 0.32088 1 21312 21312 36.127 1.195 1 10917000 9428 8356 6021 6025 9554 9554 0.041103651776211336 EAVGALLPAS 10 Unmodified _EAVGALLPAS_ 0 0 0 ENST00000265354.5_1_6:43147153-43147468:+|nuORF ENST00000265354.5_1_6:43147153-43147468:+|nuORF ENST00000265354.5_1_6:43147153-43147468:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.260925 926.507297 0.35814 0.00016627 -0.24851 -0.00011537 0.10963 5.0897E-05 464.26077059877883 106.73 1.2545 106.73 106.26 107.51 0 0.12701 -0.000202 NaN 36.127 71 35 3 NaN NaN NaN NaN 0 NaN NaN 0 7033900 9429 8356 6021 6025 0.041103651776211336 EAVGALLPAS 10 Unmodified _EAVGALLPAS_ 0 0 0 ENST00000265354.5_1_6:43147153-43147468:+|nuORF ENST00000265354.5_1_6:43147153-43147468:+|nuORF ENST00000265354.5_1_6:43147153-43147468:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.260925 926.507297 -0.39266 -0.0001823 0.53117 0.0002466 0.1385 6.4301E-05 464.2610987448503 110.95 1.3227 106.52 106.09 107.41 -4.4231 -0.085949 0.00052194 NaN 36.127 84 37 4 NaN NaN NaN NaN 0 NaN NaN 0 13768000 9430 8356 6021 6025 0.041103651776211336 EAVGALLPAS 10 Unmodified _EAVGALLPAS_ 0 0 0 ENST00000265354.5_1_6:43147153-43147468:+|nuORF ENST00000265354.5_1_6:43147153-43147468:+|nuORF ENST00000265354.5_1_6:43147153-43147468:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.260925 926.507297 0.621 0.00028831 -0.52346 -0.00024302 0.09754 4.5284E-05 464.2606196862172 110.83 1.51 106.6 106.12 107.63 -4.2289 -0.004718 -0.0004573 NaN 36.127 82 42 3 NaN NaN NaN NaN 0 NaN NaN 0 10917000 9431 8356 6021 6025 0.041103651776211336 EAVGQDEAVY 10 Unmodified _EAVGQDEAVY_ 0 0 0 AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant;ENSG00000124608|ENST00000244571|AARS2 AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2763061523438 2 540.745836 1079.47712 0.23614 0.00012769 0.2344 0.00012675 0.47054 0.00025445 540.7459859963267 96.417 0.7246 96.417 96.011 96.736 0 31 20 2 0 0 0 0.6817 1 18858 18858 13.042 0.80181 1 2701900 9432 3 6022 6026 9555 9555 -0.05944038278244079 EAVGYFLY 8 Unmodified _EAVGYFLY_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24444580078125 2 481.236919 960.459284 NaN NaN NaN NaN NaN NaN NaN 123.28 1 118.55 118.05 119.05 -4.731 0 0 0 0.21323 1 23682 23682 14.582 1.5392 1 9433 4150 6023 6027 9556 9556 -0.02252708742435061 EAVHDLLR 8 Unmodified _EAVHDLLR_ 0 0 0 PARVB|p.D240Efs*17|1|0.03|ENSG00000188677|chr22:44147868-44147868|T/-|frameshift_variant;nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB PARVB|p.D240Efs*17|1|0.03|ENSG00000188677|chr22:44147868-44147868|T/-|frameshift_variant PARVB|p.D240Efs*17|1|0.03|ENSG00000188677|chr22:44147868-44147868|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.04705810546875 3 318.178536 951.513779 NaN NaN NaN NaN NaN NaN NaN 49.017 1 49.017 48.517 49.517 0 0 0 0 0.21486 1 9262 9262 3.2813 0 1 9434 7188 6024 6028 9557 9557 0.036083031289990686 EAVHEDSS 8 Unmodified _EAVHEDSS_ 0 0 0 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22796630859375 2 437.182872 872.35119 NaN NaN NaN NaN NaN NaN NaN 97.268 1 97.268 96.768 97.768 0 0 0 0 0.23025 1 19060 19060 0.62683 0.50396 1 9435 12368 6025 6029 9558 9558 -0.090091250636533 EAVHLAEPP 9 Unmodified _EAVHLAEPP_ 0 0 0 ENST00000355716.4_1_1:2494745-2494943:+|nuORF ENST00000355716.4_1_1:2494745-2494943:+|nuORF ENST00000355716.4_1_1:2494745-2494943:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7733154296875 2 481.750724 961.486896 NaN NaN NaN NaN NaN NaN NaN 31.372 1 29.142 28.642 29.642 -2.2305 0 0 0 0.23508 1 5692 5692 7.9102 2.1497 1 9436 8961 6026 6030 9559 9559 0.0046119451779986775 EAVHNLKAV 9 Unmodified _EAVHNLKAV_ 0 0 0 MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant;nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7 MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2527770996094 2 490.779816 979.545079 0.24843 0.00012193 0.29204 0.00014333 0.54048 0.00026525 490.779761719903 26.795 0.39046 25.16 24.891 25.282 -1.6347 16 10 2 0 0 0 0.80521 1 4469 4469 10.824 1.4408 1 1045200 9437 6903 6027 6031 9560 9560 0.05448876163075056 EAVHNPLSL 9 Unmodified _EAVHNPLSL_ 0 0 0 REV__ENST00000306376.9_1_3:185765741-185765801:-|nuORF REV__ENST00000306376.9_1_3:185765741-185765801:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.265869140625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 74.903 1 74.903 74.403 75.403 0 0 0 0 0.19674 1 14547 14547 0.12781 0 1 + 9438 20439 6028 6032 9561 9561 0.023328834091330464 EAVHRCGEEQC 11 Unmodified _EAVHRCGEEQC_ 0 0 0 REV__ARID5A|p.G283V|1|0.21|ENSG00000196843|chr2:96551376-96551376|G/T|missense_variant REV__ARID5A|p.G283V|1|0.21|ENSG00000196843|chr2:96551376-96551376|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.757080078125 2 630.758429 1259.5023 NaN NaN NaN NaN NaN NaN NaN 24.666 1 23.132 22.632 23.632 -1.5342 0 0 0 0.23476 1 4023 4023 4.5289 0.58447 1 + 9439 13119 6029 6033 9562 9562 -0.1170663001896628 EAVIAKLSS 9 Unmodified _EAVIAKLSS_ 0 0 0 REV__nc|ENSG00000035928|P35251|RFC1 REV__nc|ENSG00000035928|P35251|RFC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.529296875 3 306.514925 916.522947 NaN NaN NaN NaN NaN NaN NaN 31.846 1 31.846 31.346 32.346 0 0 0 0 0.19674 1 5765 5765 0.40827 0 1 + 9440 14030 6030 6034 9563 9563 0.06134651694674176 EAVKEYVDI 9 Unmodified _EAVKEYVDI_ 0 0 0 nc|ENSG00000184507|Q86Y26|NUTM1;nc|ENSG00000184507|Q86Y26-3|NUTM1;ENSG00000184507|ENST00000537011|NUTM1;nc|ENSG00000184507|Q86Y26-2|NUTM1;NUTM1|p.K444Nfs*8|1|0.34|ENSG00000184507|chr15:34355070-34355070|A/-|frameshift_variant;NUTM1|p.G519Afs*26|2|0.3|ENSG00000184507|chr15:34355644-34355644|G/-|frameshift_variant;NUTM1|p.M697Wfs*28|1|0.12|ENSG00000184507|chr15:34356176-34356176|C/-|frameshift_variant;NUTM1|p.Q931Kfs*53|1|0.37|ENSG00000184507|chr15:34356879-34356879|C/-|frameshift_variant nc|ENSG00000184507|Q86Y26|NUTM1 nc|ENSG00000184507|Q86Y26|NUTM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2786865234375 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 28.621 1 26.665 26.165 27.165 -1.9561 0 0 0 0.1963 1 5125 5125 0.073264 0.029476 1 9441 6915 6031 6035 9564 9564 0.009303131409069465 EAVKKLFK 8 Unmodified _EAVKKLFK_ 0 0 0 NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7860107421875 2 481.805303 961.596052 NaN NaN NaN NaN NaN NaN NaN 78.322 1 74.555 74.055 75.055 -3.7664 0 0 0 0.21486 1 14852 14852 9.3474 0.75416 1 9442 6270 6032 6036 9565 9565 0.1137182520794795 EAVKNFSQ 8 Unmodified _EAVKNFSQ_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.53704833984375 2 461.735074 921.455596 NaN NaN NaN NaN NaN NaN NaN 28.804 1 26.808 26.308 27.308 -1.9962 0 0 0 0.21452 1 4875 4875 13.508 1.8676 1 + 9443 17006 6033 6037 9566 9566 -0.008273785162828062 EAVKTLGG 8 Unmodified _EAVKTLGG_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2;IREB2|p.F724Lfs*48|1|0.13|ENSG00000136381|chr15:78490512-78490512|T/-|frameshift_variant ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.72186279296875 2 387.721436 773.428318 -0.092452 -3.5846E-05 0.44564 0.00017278 0.35319 0.00013694 387.7215178713328 33.216 0.73621 33.216 32.954 33.69 0 32 20 2 0 0 0 0.76728 1 6027 6027 5.7604 0 1 1096100 9444 4008 6034 6038 9567 9567 0.03254137943349633 EAVLFLEW 8 Unmodified _EAVLFLEW_ 0 0 0 REV__ENST00000423961.1_1_7:27502029-27502443:+|nuORF REV__ENST00000423961.1_1_7:27502029-27502443:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.5069885253906 3 336.179654 1005.51713 NaN NaN NaN NaN NaN NaN NaN 18.426 1 16.911 16.411 17.411 -1.5148 0 0 0 0.2386 1 2730 2730 0.0082765 0.0082765 1 + 9445 21540 6035 6039 9568 9568 0.014595531829968422 EAVLFVTK 8 Unmodified _EAVLFVTK_ 0 0 0 REV__VWA8|p.T1319Kfs*27|1|0.09|ENSG00000102763|chr13:41690186-41690186|G/-|frameshift_variant REV__VWA8|p.T1319Kfs*27|1|0.09|ENSG00000102763|chr13:41690186-41690186|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7681884765625 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 25.488 1 23.954 23.454 24.454 -1.5342 0 0 0 0.21486 1 4191 4191 5.2307 0 1 + 9446 14846 6036 6040 9569 9569 0.0656785704561571 EAVLLRREP 9 Unmodified _EAVLLRREP_ 0 0 0 REV__nc|ENSG00000134444|Q9P260|RELCH REV__nc|ENSG00000134444|Q9P260|RELCH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.23291015625 3 361.548741 1081.62439 -0.3578 -0.00012936 0.34906 0.0001262 -0.0087351 -3.1582E-06 361.5487964598395 68.264 0.55635 64.874 64.49 65.046 -3.3903 24 15 2 0 0 0 0.87497 1 12893 12893 0.96228 0 1 1322900 + 9447 16210 6037 6041 9570 9570 0.08684523117221943 EAVLLVLPLVV 11 Unmodified _EAVLLVLPLVV_ 0 0 0 nc|ENSG00000141524|Q7Z403-4|TMC6;nc|ENSG00000141524|Q7Z403-3|TMC6;TMC6|p.Y488Tfs*67|1|0.39|ENSG00000141524|chr17:78121087-78121087|G/-|frameshift_variant;ENST00000588087.5_1_17:76116732-76122925:-|nuORF;ENSG00000141524|ENST00000590602|TMC6 nc|ENSG00000141524|Q7Z403-4|TMC6 nc|ENSG00000141524|Q7Z403-4|TMC6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 582.8822021484375 2 582.88375 1163.75295 NaN NaN NaN NaN NaN NaN NaN 56.252 1 53.062 52.562 53.562 -3.1895 0 0 0 0.2367 1 10421 10421 2.9952 1.3426 1 9448 4378 6038 6042 9571 9571 0.17762065307601915 EAVLRQVY 8 Unmodified _EAVLRQVY_ 0 0 0 sp|P16801|UL95_HCMVAProteinUL95OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL95PE=3SV=1;sp|Q6SW48|UL95_HCMVMProteinUL95OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL95PE=3SV=1 sp|P16801|UL95_HCMVAProteinUL95OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL95PE=3SV=1 sp|P16801|UL95_HCMVAProteinUL95OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL95PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27313232421875 2 489.274367 976.53418 0.045353 2.219E-05 -0.028235 -1.3815E-05 0.017118 8.3752E-06 489.27430820379936 48.093 0.92043 45.224 44.809 45.729 -2.869 83 25 4 0 0 0 0.73426 1 9028 9028 9.3474 0.75416 1 58156000 9449 25761 6039 6043 9572 9572 0.04497473788796924 EAVLYASY 8 Unmodified _EAVLYASY_ 0 0 0 REV__ENSG00000096384|ENST00000371646|HSP90AB1 REV__ENSG00000096384|ENST00000371646|HSP90AB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.226806640625 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 62.747 1 59.331 58.831 59.831 -3.4158 0 0 0 0.21486 1 11717 11717 9.3474 0 1 + 9450 14621 6040 6044 9573 9573 -0.02209299122102948 EAVLYMKVI 9 Unmodified _EAVLYMKVI_ 0 0 0 MASP2|p.F518Lfs*16|1|0.11|ENSG00000009724|chr1:11027392-11027392|A/-|frameshift_variant MASP2|p.F518Lfs*16|1|0.11|ENSG00000009724|chr1:11027392-11027392|A/-|frameshift_variant MASP2|p.F518Lfs*16|1|0.11|ENSG00000009724|chr1:11027392-11027392|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2703247070312 2 533.304278 1064.594 NaN NaN NaN NaN NaN NaN NaN 64.367 1 64.367 63.867 64.867 0 0 0 0 0.22251 1 12391 12391 16.942 5.302 1 9451 12113 6041 6045 9574 9574 0.06429028407842452 EAVMDCMY 8 Unmodified _EAVMDCMY_ 0 0 0 REV__GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant REV__GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2406005859375 2 481.176832 960.339111 0.18144 8.7305E-05 1.3044 0.00062766 1.4859 0.00071497 481.17732914493814 84.08 0.41559 80.171 80.041 80.457 -3.9093 15 11 2 0 0 0 0.89147 1 16021 16021 0.12286 0 1 794850 + 9452 18628 6042 6046 9575 9575 -0.14264524394366163 EAVNHGTID 9 Unmodified _EAVNHGTID_ 0 0 0 tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1 tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1 tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7292175292969 2 478.227613 954.440674 -0.054527 -2.6076E-05 -0.15577 -7.4495E-05 -0.2103 -0.00010057 478.2275163191147 23.496 0.59562 23.496 23.267 23.863 0 26 16 2 0 0 0 0.57447 1 4046 4046 14.838 2.3067 1 1158500 9453 26325 6043 6047 9576 9576 -0.03836870384282065 EAVQEITEY 9 Unmodified _EAVQEITEY_ 0 0 0 ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG ENSG00000132170|ENST00000651735|PPARG ENSG00000132170|ENST00000651735|PPARG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.270751953125 2 541.256037 1080.49752 0.43246 0.00023407 -0.10433 -5.647E-05 0.32813 0.0001776 541.2559487473428 69.684 0.88217 66.104 65.568 66.45 -3.5798 58 24 4 0 0 0 0.12542 1 13141 13141 47.749 0 1 15625000 9454 3708 6044 6048 9577 9577 -0.039508676184368596 EAVQEITEY 9 Unmodified _EAVQEITEY_ 0 0 0 ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG ENSG00000132170|ENST00000651735|PPARG ENSG00000132170|ENST00000651735|PPARG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2705688476562 2 541.256037 1080.49752 0.42357 0.00022926 -0.17999 -9.7419E-05 0.24359 0.00013184 541.2559042280238 69.569 0.87295 66.179 65.772 66.645 -3.3903 57 24 3 0 0 0 0.13813 1 13170 13170 45.7 0 1 16850000 9455 3708 6044 6048 9578 9578 -0.039508676184368596 EAVQLVFR 8 Unmodified _EAVQLVFR_ 0 0 0 nc|ENSG00000069998|Q9BXW7-2|HDHD5;ENSG00000069998|ENST00000336737|HDHD5;ENST00000486462.1_1_22:17618913-17622310:-|nuORF;ENST00000477157.5_1_22:17618913-17622310:-|nuORF nc|ENSG00000069998|Q9BXW7-2|HDHD5 nc|ENSG00000069998|Q9BXW7-2|HDHD5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7789001464844 2 481.276909 960.539266 0.12047 5.7979E-05 0.047624 2.292E-05 0.16809 8.0899E-05 481.27687248266113 60.892 2.1052 57.523 56.391 58.497 -3.3694 85 59 2 0 0 0 8448 1 11400 11400 0.62683 0 1 1455300 9456 1422 6045 6049 9579 9579 0.057417776514284924 EAVQPKKY 8 Unmodified _EAVQPKKY_ 0 0 0 REV__RSPH14|p.E325K|1|0.15|ENSG00000100218|chr22:23059536-23059536|C/T|missense_variant REV__RSPH14|p.E325K|1|0.15|ENSG00000100218|chr22:23059536-23059536|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7685546875 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 24.474 1 22.826 22.326 23.326 -1.6482 0 0 0 0.21486 1 4263 4263 9.3474 1.4373 1 + 9457 24583 6046 6050 9580 9580 0.040980714145121055 EAVQPKKY 8 Unmodified _EAVQPKKY_ 0 0 0 REV__RSPH14|p.E325K|1|0.15|ENSG00000100218|chr22:23059536-23059536|C/T|missense_variant REV__RSPH14|p.E325K|1|0.15|ENSG00000100218|chr22:23059536-23059536|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7685852050781 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 62.779 1 59.818 59.318 60.318 -2.9614 0 0 0 0.21486 1 12117 12117 12.532 0.89125 1 + 9458 24583 6046 6050 9581 9581 0.040980714145121055 EAVQPKKY 8 Unmodified _EAVQPKKY_ 0 0 0 REV__RSPH14|p.E325K|1|0.15|ENSG00000100218|chr22:23059536-23059536|C/T|missense_variant REV__RSPH14|p.E325K|1|0.15|ENSG00000100218|chr22:23059536-23059536|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77093505859375 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 31.218 1 29.192 28.692 29.692 -2.0264 0 0 0 0.21486 1 5382 5382 9.3474 3.1417 1 + 9459 24583 6046 6050 9582 9582 0.040980714145121055 EAVQVQRQ 8 Unmodified _EAVQVQRQ_ 0 0 0 REV__nc|ENSG00000125967|Q96P71-2|NECAB3 REV__nc|ENSG00000125967|Q96P71-2|NECAB3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7430114746094 2 479.259248 956.503943 0.18751 8.9867E-05 0.97756 0.0004685 1.1651 0.00055837 479.25979302638757 19.709 0.34302 18.313 18.173 18.516 -1.3966 11 9 2 0 0 0 1.0254 1 3302 3302 5.2307 0 1 502830 + 9460 15846 6047 6051 9583 9583 0.023951151236246915 EAVQYKTQV 9 Unmodified _EAVQYKTQV_ 0 0 0 ENSG00000121552|ENST00000264474|CSTA ENSG00000121552|ENST00000264474|CSTA ENSG00000121552|ENST00000264474|CSTA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2817993164062 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 60.868 1 60.868 60.368 61.368 0 0 0 0 0.23508 1 11676 11676 10.074 1.3285 1 9461 3181 6048 6052 9584 9584 0.02053135235018999 EAVQYKTQV 9 Unmodified _EAVQYKTQV_ 0 0 0 ENSG00000121552|ENST00000264474|CSTA ENSG00000121552|ENST00000264474|CSTA ENSG00000121552|ENST00000264474|CSTA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2825927734375 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 63.744 1 60.746 60.246 61.246 -2.9975 0 0 0 0.22962 1 12321 12321 14.838 3.198 1 9462 3181 6048 6052 9585 9585 0.02053135235018999 EAVQYKTQV 9 Unmodified _EAVQYKTQV_ 0 0 0 ENSG00000121552|ENST00000264474|CSTA ENSG00000121552|ENST00000264474|CSTA ENSG00000121552|ENST00000264474|CSTA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2818603515625 2 533.282389 1064.55022 0.56807 0.00030294 -0.81118 -0.00043259 -0.24311 -0.00012965 533.2819118816406 64.161 0.45761 60.746 60.494 60.952 -3.4158 17 12 2 0 0 0 0.57447 1 12011 12011 14.838 2.5976 1 739170 9463 3181 6048 6052 9586 9586 0.02053135235018999 EAVRAPAVAP 10 Unmodified _EAVRAPAVAP_ 0 0 0 REV__ENST00000552943.5_1_16:699416-703842:+|nuORF REV__ENST00000552943.5_1_16:699416-703842:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2530212402344 2 490.779816 979.545079 0.24024 0.00011791 -0.016783 -8.2369E-06 0.22346 0.00010967 490.77959398440044 25.178 0.34483 25.178 25.013 25.358 0 14 9 2 0 0 0 0.87854 1 4363 4363 13.906 3.0821 1 852380 + 9464 22954 6049 6053 9587 9587 0.05448876163075056 EAVRDLLAP 9 Unmodified _EAVRDLLAP_ 0 0 0 ENSG00000167702|ENST00000645548|KIFC2;nc|ENSG00000167702|Q96AC6|KIFC2;ENST00000531423.1_1_8:145696018-145698106:+|nuORF ENSG00000167702|ENST00000645548|KIFC2 ENSG00000167702|ENST00000645548|KIFC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 492.26751708984375 2 492.279649 982.544745 NaN NaN NaN NaN NaN NaN NaN 102.56 1 102.56 102.06 103.06 0 0 0 0 0.19674 1 20145 20145 0.029283 0 1 9465 5838 6050 6054 9588 9588 0.052774564432297666 EAVREFVQ 8 Unmodified _EAVREFVQ_ 0 0 0 REV__ENST00000460059.1_1_7:27868343-27872346:+|nuORF REV__ENST00000460059.1_1_7:27868343-27872346:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2740478515625 2 489.256174 976.497795 0.29611 0.00014487 -0.85669 -0.00041914 -0.56058 -0.00027427 489.2556539092891 63.76 0.38074 60.345 60.113 60.494 -3.4158 23 10 3 0 0 0 0.69031 1 11930 11930 15.847 0 1 4042600 + 9466 21871 6051 6055 9589 9589 0.00860596892096055 EAVREFVQ 8 Unmodified _EAVREFVQ_ 0 0 0 REV__ENST00000460059.1_1_7:27868343-27872346:+|nuORF REV__ENST00000460059.1_1_7:27868343-27872346:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2646179199219 2 489.256174 976.497795 0.0093034 4.5517E-06 -0.80452 -0.00039362 -0.79522 -0.00038907 489.25579318278295 63.63 0.41272 60.374 60.055 60.468 -3.2567 28 11 3 0 0 0 0.69031 1 11945 11945 15.847 0 1 5208900 + 9467 21871 6051 6055 9590 9590 0.00860596892096055 EAVRGFQL 8 Unmodified _EAVRGFQL_ 0 0 0 REV__nc|ENSG00000112041|O00294-2|TULP1 REV__nc|ENSG00000112041|O00294-2|TULP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2278137207031 2 460.253434 918.492316 NaN NaN NaN NaN NaN NaN NaN 113.25 1 108.72 108.22 109.22 -4.5259 0 0 0 0.21452 1 21738 21738 13.508 0.97634 1 + 9468 15275 6052 6056 9591 9591 0.029809181002860896 EAVRLDDVAV 10 Unmodified _EAVRLDDVAV_ 0 0 0 ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 ENSG00000139926|ENST00000344768|FRMD6 ENSG00000139926|ENST00000344768|FRMD6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79296875 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 17.239 1 15.725 15.225 16.225 -1.5148 0 0 0 0.22588 1 2492 2492 3.9444 0 1 9469 4271 6053 6057 9592 9592 0.0323252026373666 EAVRPALILI 10 Unmodified _EAVRPALILI_ 0 0 0 nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant;ENST00000489023.5_1_2:210693994-210832362:+|nuORF;nc|ENSG00000144406|Q8N2C7-6|UNC80;nc|ENSG00000144406|Q8N2C7-5|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.784423828125 2 547.850242 1093.68593 NaN NaN NaN NaN NaN NaN NaN 98.043 1 93.774 93.274 94.274 -4.2692 0 0 0 2.8426 1 18735 18735 0.043787 0 1 9470 4551 6054 6058 9593 9593 0.14283454816518315 EAVRQDVL 8 Unmodified _EAVRQDVL_ 0 0 0 REV__POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant REV__POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2559814453125 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 50.811 1 47.929 47.429 48.429 -2.8824 0 0 0 0.21039 1 9644 9644 16.942 0 1 + 9471 16702 6055 6059 9594 9594 0.03068596892092046 EAVRVHRATL 10 Unmodified _EAVRVHRATL_ 0 0 0 REV__ENST00000493082.5_1_5:850626-880074:-|nuORF REV__ENST00000493082.5_1_5:850626-880074:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3361206054688 2 576.335821 1150.65709 0.38217 0.00022026 3.3598 0.0019364 3.742 0.0021566 576.8395912548169 66.622 0.14014 63.126 63.044 63.184 -3.4965 5 3 2 0 0 0 0.91149 1 12495 12495 1.3295 0.80477 1 1738400 + 9472 22340 6056 6060 9595 9595 0.08778730240078403 EAVSIFNSI 9 Unmodified _EAVSIFNSI_ 0 0 0 REV__nc|ENSG00000116703|P20941-2|PDC REV__nc|ENSG00000116703|P20941-2|PDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25860595703125 2 490.258382 978.502212 0.22479 0.00011021 0.27142 0.00013306 0.49621 0.00024327 490.2583196998363 36.158 0.42814 36.158 35.925 36.353 0 15 11 2 0 0 0 0.55979 1 6688 6688 15.847 0 1 2811200 + 9473 15494 6057 6061 9596 9596 0.012100613150096251 EAVSLMGQQ 9 Unmodified _EAVSLMGQQ_ 0 0 0 REV__nc|ENSG00000145916|Q96G75-2|RMND5B REV__nc|ENSG00000145916|Q96G75-2|RMND5B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7682189941406 2 481.734217 961.453881 NaN NaN NaN NaN NaN NaN NaN 92.29 1 88.482 87.982 88.982 -3.8083 0 0 0 0.21065 1 17682 17682 20.454 4.6064 1 + 9474 16862 6058 6062 9597 9597 -0.02838755596530973 EAVSTQMEKWY 11 Unmodified _EAVSTQMEKWY_ 0 0 0 ENST00000518253.5_1_6:90312741-90340720:+|nuORF;nc|ENSG00000135299|Q9Y2G4-4|ANKRD6;nc|ENSG00000135299|Q9Y2G4-1|ANKRD6;nc|ENSG00000135299|Q9Y2G4-3|ANKRD6;ENSG00000135299|ENST00000339746|ANKRD6 ENST00000518253.5_1_6:90312741-90340720:+|nuORF ENST00000518253.5_1_6:90312741-90340720:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2380065917969 3 457.879827 1370.61765 0.19195 8.7892E-05 -0.46324 -0.00021211 -0.27128 -0.00012422 457.87975214535993 99.182 1.374 95.225 94.764 96.138 -3.9564 155 39 6 0 0 0 0.80759 1 18949 18949 2.6312 1.3016 1 219150000 9475 3913 6059 6063 9598 9598 -0.052832026162832335 EAVSVVLTY 9 Unmodified _EAVSVVLTY_ 0 0 0 REV__nc|ENSG00000164830|Q8N573-4|OXR1 REV__nc|ENSG00000164830|Q8N573-4|OXR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2587585449219 2 490.768583 979.522613 0.13837 6.7908E-05 0.009839 4.8287E-06 0.14821 7.2737E-05 490.7687276701779 98.767 0.41437 94.635 94.406 94.82 -4.1326 17 11 2 0 0 0 0.80521 1 19362 19362 10.824 4.1008 1 895530 + 9476 24142 6060 6064 9599 9599 0.03203231974805476 EAVSYCML 8 Unmodified _EAVSYCML_ 0 0 0 REV__nc|ENSG00000138794|P55212-2|CASP6 REV__nc|ENSG00000138794|P55212-2|CASP6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23846435546875 2 458.201164 914.387775 NaN NaN NaN NaN NaN NaN NaN 105.17 1 105.17 104.67 105.67 0 0 0 0 0.21486 1 20672 20672 5.7604 0 1 + 9477 16492 6061 6065 9600 9600 -0.07284287762968233 EAVTFKFGPQ 10 Unmodified _EAVTFKFGPQ_ 0 0 0 REV__nc|ENSG00000140332|Q04726-4|TLE3 REV__nc|ENSG00000140332|Q04726-4|TLE3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.220703125 3 375.197596 1122.57096 NaN NaN NaN NaN NaN NaN NaN 30.587 1 30.587 30.087 31.087 0 0 0 0 0.22588 1 5500 5500 8.4443 1.8139 1 + 9478 24069 6062 6066 9601 9601 0.014577256147049411 EAVTPSQAA 9 Unmodified _EAVTPSQAA_ 0 0 0 REV__ENST00000591483.1_1_19:3284796-3293329:+|nuORF REV__ENST00000591483.1_1_19:3284796-3293329:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2357482910156 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 68.742 1 65.352 64.852 65.852 -3.3903 0 0 0 0.22251 1 12985 12985 16.942 2.3606 1 + 9479 23338 6063 6067 9602 9602 -0.017353712702515622 EAVVEKKAS 9 Unmodified _EAVVEKKAS_ 0 0 0 REV__ENSG00000130826|ENST00000369550|DKC1 REV__ENSG00000130826|ENST00000369550|DKC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2358703613281 2 480.771657 959.528761 -0.5509 -0.00026486 1.8376 0.00088347 1.2867 0.00061861 480.7726236097655 22.907 0.23077 21.118 20.992 21.223 -1.7886 9 6 2 0 0 0 0.61228 1 3670 3670 12.241 2.8575 1 165920 + 9480 16034 6064 6068 9603 9603 0.047377502063341126 EAVVKAEQ 8 Unmodified _EAVVKAEQ_ 0 0 0 ENST00000261037.7_1_3:99394558-99463832:+|nuORF;ENST00000452013.5_1_3:99357381-99463832:+|nuORF ENST00000261037.7_1_3:99394558-99463832:+|nuORF ENST00000261037.7_1_3:99394558-99463832:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2352600097656 2 437.23745 872.460347 -0.055539 -2.4284E-05 0.0027654 1.2091E-06 -0.052774 -2.3075E-05 437.23738799456345 23.952 0.31532 22.418 22.259 22.575 -1.5342 13 8 2 0 0 0 0.74818 1 3854 3854 7.2892 0 1 842520 9481 8289 6065 6069 9604 9604 0.019015056264720442 EAVVLEDR 8 Unmodified _EAVVLEDR_ 0 0 0 REV__ENST00000543938.5_1_15:83328314-83349061:-|nuORF REV__ENST00000543938.5_1_15:83328314-83349061:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25775146484375 2 465.748182 929.481811 -0.0047623 -2.218E-06 -0.55289 -0.00025751 -0.55765 -0.00025973 465.74800392949425 24.713 0.41257 23.179 22.955 23.367 -1.5342 17 11 2 0 0 0 0.97966 1 4036 4036 16.942 0 1 665700 + 9482 14897 6066 6070 9605 9605 0.014248906551870277 EAVVLFTQ 8 Unmodified _EAVVLFTQ_ 0 0 0 ENST00000487623.1_1_2:74718721-74719901:+|nuORF;ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31 ENST00000487623.1_1_2:74718721-74719901:+|nuORF ENST00000487623.1_1_2:74718721-74719901:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.74853515625 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 26.453 1 24.818 24.318 25.318 -1.6347 0 0 0 0.21486 1 4389 4389 5.2307 2.3415 1 9483 2841 6067 6071 9606 9606 0.029309801489034726 EAVVYPLQE 9 Unmodified _EAVVYPLQE_ 0 0 0 ENST00000592297.2_1_19:1083019-1086002:+|nuORF;ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45 ENST00000592297.2_1_19:1083019-1086002:+|nuORF ENST00000592297.2_1_19:1083019-1086002:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6890258789062 2 524.27149 1046.52843 0.13883 7.2787E-05 -3.1517 -0.0016523 -3.0128 -0.0015795 524.2697540266096 19.234 0.38496 19.234 19.101 19.486 0 13 10 2 0 0 0 0.87511 1 3154 3154 7.2892 1.0974 1 565390 9484 6676 6068 6072 9607 9607 0.00702330486478786 EAVWLAYK 8 Unmodified _EAVWLAYK_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;ENST00000505431.1_1_5:37205375-37206408:-|nuORF nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26470947265625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 66.405 1 62.909 62.409 63.409 -3.4965 0 0 0 0.21039 1 12443 12443 16.942 2.104 1 9485 7385 6069 6073 9608 9608 0.027349729028514957 EAWEEKTFY 9 Unmodified _EAWEEKTFY_ 0 0 0 REV__ENSG00000126856|ENST00000449207|PRDM7 REV__ENSG00000126856|ENST00000449207|PRDM7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2733154296875 2 601.771854 1201.52915 0.62119 0.00037382 -0.53412 -0.00032142 0.087076 5.24E-05 601.7713460718777 30.314 0.38944 28.239 28.074 28.464 -2.0743 16 10 2 0 0 0 0.87974 1 5230 5230 4.3292 0 1 637000 + 9486 15869 6070 6074 9609 9609 -0.06354874864496196 EAWHLYNY 8 Unmodified _EAWHLYNY_ 0 0 0 LCT|p.D1584Y|1|0.32|ENSG00000115850|chr2:135800723-135800723|C/A|missense_variant LCT|p.D1584Y|1|0.32|ENSG00000115850|chr2:135800723-135800723|C/A|missense_variant LCT|p.D1584Y|1|0.32|ENSG00000115850|chr2:135800723-135800723|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7919311523438 2 548.248349 1094.48214 0.63139 0.00034616 1.0828 0.00059364 1.7142 0.00093979 548.2493019947158 45.228 0.17796 45.228 45.092 45.27 0 5 4 2 0 0 0 1.0249 1 8487 8487 5.7604 3.7007 1 662390 9487 12072 6071 6075 9610 9610 -0.06131689624930914 EAWKAKKK 8 Unmodified _EAWKAKKK_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4;ENST00000534407.5_1_11:124757602-124761787:-|nuORF;ENST00000532216.5_1_11:124756354-124763822:-|nuORF nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 330.01385498046875 3 330.202793 987.58655 -0.284 -9.3777E-05 1.2586 0.0004156 0.97461 0.00032182 330.20317197352983 19.811 0.41818 18.486 18.279 18.698 -1.3251 20 11 2 0 0 0 1.0115 1 3059 3059 3.5965 3.2459 1 704540 9488 4996 6072 6076 9611 9611 0.09226056922409498 EAWKAKKK 8 Unmodified _EAWKAKKK_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4;ENST00000534407.5_1_11:124757602-124761787:-|nuORF;ENST00000532216.5_1_11:124756354-124763822:-|nuORF nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 330.202793 987.58655 -0.48892 -0.00016144 1.299 0.00042893 0.81006 0.00026748 330.2031359886042 18.455 0.38652 18.455 18.266 18.652 0 -0.052129 9.1503E-05 NaN 3.5965 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1002600 9489 4996 6072 6076 0.09226056922409498 EAWKAKKK 8 Unmodified _EAWKAKKK_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4;ENST00000534407.5_1_11:124757602-124761787:-|nuORF;ENST00000532216.5_1_11:124756354-124763822:-|nuORF nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 330.202793 987.58655 -0.059348 -1.9597E-05 1.0677 0.00035255 1.0083 0.00033295 330.20302688605676 19.977 0.34472 18.58 18.379 18.723 -1.3966 0.073301 -0.00013763 NaN 3.5965 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 484740 9490 4996 6072 6076 0.09226056922409498 EAWPGARRA 9 Unmodified _EAWPGARRA_ 0 0 0 ENST00000415949.5_1_7:54826988-54827489:-|nuORF ENST00000415949.5_1_7:54826988-54827489:-|nuORF ENST00000415949.5_1_7:54826988-54827489:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 506.706787109375 2 507.267407 1012.52026 0.27994 0.00014201 -1.3746 -0.00069731 -1.0947 -0.0005553 507.2667972644057 72.325 1.0798 68.787 68.186 69.266 -3.5385 51 30 2 0 0 0 0.59847 1 13630 13630 0.0033805 0 1 1117600 9491 9617 6073 6077 9612 9612 0.014502410803629573 EAWPGKWGL 9 Unmodified _EAWPGKWGL_ 0 0 0 REV__ENST00000593532.5_1_19:50885885-50886227:+|nuORF REV__ENST00000593532.5_1_19:50885885-50886227:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2805786132812 2 522.269084 1042.52362 -0.91896 -0.00047995 0.16128 8.4232E-05 -0.75768 -0.00039571 522.2690580633938 19.731 0.48292 18.096 17.878 18.361 -1.6351 22 13 3 0 0 0 0.68435 1 2957 2957 7.2892 1.5574 1 2536800 + 9492 23361 6074 6078 9613 9613 0.004054911343700951 EAWPGKWGL 9 Unmodified _EAWPGKWGL_ 0 0 0 REV__ENST00000593532.5_1_19:50885885-50886227:+|nuORF REV__ENST00000593532.5_1_19:50885885-50886227:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2689208984375 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 23.275 1 21.487 20.987 21.987 -1.7886 0 0 0 0.23508 1 3735 3735 6.7232 2.3939 1 + 9493 23361 6074 6078 9614 9614 0.004054911343700951 EAWRAWGRYGG 11 Unmodified _EAWRAWGRYGG_ 0 0 0 ENST00000394532.7_1_11:64051867-64051981:-|nuORF ENST00000394532.7_1_11:64051867-64051981:-|nuORF ENST00000394532.7_1_11:64051867-64051981:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21533203125 3 436.879261 1307.61595 NaN NaN NaN NaN NaN NaN NaN 44.454 1 44.454 43.954 44.954 0 0 0 0 0.23698 1 8342 8342 1.3296 0 1 9494 9416 6075 6079 9615 9615 -0.025550307994080868 EAWRFLTY 8 Unmodified _EAWRFLTY_ 0 0 0 REV__ENSG00000164169|ENST00000322396|PRMT9 REV__ENSG00000164169|ENST00000322396|PRMT9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7752075195312 2 543.274367 1084.53418 0.1467 7.9697E-05 0.73112 0.0003972 0.87781 0.00047689 543.7749161482025 58.631 0.83362 55.72 55.168 56.001 -2.9105 46 23 3 0 0 0 0.66265 1 11284 11284 18.135 4.6271 1 1845200 + 9495 17657 6076 6080 9616 9616 -0.004705262112111086 EAWRFLTY 8 Unmodified _EAWRFLTY_ 0 0 0 REV__ENSG00000164169|ENST00000322396|PRMT9 REV__ENSG00000164169|ENST00000322396|PRMT9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7886352539062 2 543.274367 1084.53418 0.18673 0.00010144 0.94119 0.00051133 1.1279 0.00061277 543.7748792451532 58.9 0.76597 55.695 55.264 56.03 -3.2052 40 21 3 0 0 0 0.66265 1 11058 11058 18.135 3.2967 1 686480 + 9496 17657 6076 6080 9617 9617 -0.004705262112111086 EAWRLHQK 8 Unmodified _EAWRLHQK_ 0 0 0 ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A ENSG00000164077|ENST00000296473|MON1A ENSG00000164077|ENST00000296473|MON1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.0731506347656 3 356.52968 1066.56721 -0.29384 -0.00010476 3.5261 0.0012572 3.2323 0.0011524 356.53100972274194 19.653 0.23709 18.328 18.214 18.451 -1.3251 9 6 2 0 0 0 1.0248 1 3031 3031 3.5965 0 1 469600 9497 5503 6077 6081 9618 9618 0.03659100631512047 EAWRRLERFD 10 Unmodified _EAWRRLERFD_ 0 0 0 ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1 ENSG00000138399|ENST00000453153|FASTKD1 ENSG00000138399|ENST00000453153|FASTKD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2386779785156 3 459.905587 1376.69493 NaN NaN NaN NaN NaN NaN NaN 18.097 1 16.825 16.325 17.325 -1.2722 0 0 0 0.22588 1 2698 2698 0.15932 0 1 9498 4168 6078 6082 9619 9619 0.021651964348620822 EAWWPDSA 8 Unmodified _EAWWPDSA_ 0 0 0 REV__NUP133|p.R578W|1|0.2|ENSG00000069248|chr1:229477621-229477621|G/A|missense_variant REV__NUP133|p.R578W|1|0.2|ENSG00000069248|chr1:229477621-229477621|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2547302246094 2 481.20615 960.397747 NaN NaN NaN NaN NaN NaN NaN 21.731 1 20.257 19.757 20.757 -1.4742 0 0 0 0.21486 1 3687 3687 12.532 3.1484 1 + 9499 24392 6079 6083 9620 9620 -0.08403640441713378 EAYASINSRI 10 Unmodified _EAYASINSRI_ 0 0 0 L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|126|3|sense L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|126|3|sense L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|126|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2218017578125 3 375.196256 1122.56694 -0.62804 -0.00023564 1.3774 0.00051679 0.74934 0.00028115 375.19667780524884 14.542 0.3176 13.369 13.279 13.597 -1.173 15 8 3 0 0 0 0.76625 1 2019 2019 0.62683 0 1 1289900 9500 12057 6080 6084 9621 9621 0.010556361210092291 EAYATVQFI 9 Unmodified _EAYATVQFI_ 0 0 0 REV__ENSG00000156395|ENST00000369701|SORCS3 REV__ENSG00000156395|ENST00000369701|SORCS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2688598632812 2 521.266207 1040.51786 0.25757 0.00013426 0.052636 2.7437E-05 0.3102 0.0001617 521.2661581595206 134.22 1.0229 129.4 128.95 129.97 -4.8175 87 28 4 0 0 0 0.48644 1 25771 25771 20.454 0 1 27356000 + 9501 17257 6081 6085 9622 9622 -0.0007765216794268781 EAYDPFHN 8 Unmodified _EAYDPFHN_ 0 0 0 KLHL6|p.T440A|1|0.19|ENSG00000172578|chr3:183494111-183494111|T/C|missense_variant KLHL6|p.T440A|1|0.19|ENSG00000172578|chr3:183494111-183494111|T/C|missense_variant KLHL6|p.T440A|1|0.19|ENSG00000172578|chr3:183494111-183494111|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 331.0096130371094 3 331.47513 991.40356 -0.40553 -0.00013442 0.36734 0.00012177 -0.038188 -1.2658E-05 331.4752858080866 23.487 0.2469 23.487 23.267 23.514 0 11 6 3 0 0 0 1.0277 1 4011 4011 1.6526 0 1 568190 9502 12008 6082 6086 9623 9623 -0.09248541930048759 EAYDPFHN 8 Unmodified _EAYDPFHN_ 0 0 0 KLHL6|p.T440A|1|0.19|ENSG00000172578|chr3:183494111-183494111|T/C|missense_variant KLHL6|p.T440A|1|0.19|ENSG00000172578|chr3:183494111-183494111|T/C|missense_variant KLHL6|p.T440A|1|0.19|ENSG00000172578|chr3:183494111-183494111|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 331.47513 991.40356 0.045333 1.5027E-05 -0.48496 -0.00016075 -0.43963 -0.00014573 331.4749549212699 24.874 0.3064 23.34 23.163 23.469 -1.5342 -0.073474 -0.00032307 NaN 1.6526 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 397550 9503 12008 6082 6086 -0.09248541930048759 EAYDQHDDPI 10 Unmodified _EAYDQHDDPI_ 0 0 0 REV__PLCB3|p.R918Afs*95|5|0.32|ENSG00000149782|chr11:64265045-64265045|C/-|frameshift_variant REV__PLCB3|p.R918Afs*95|5|0.32|ENSG00000149782|chr11:64265045-64265045|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2836303710938 2 601.75165 1201.48875 0.58097 0.0003496 -3.2613 -0.0019625 -2.6803 -0.0016129 602.2497980659049 166.96 0.14101 162.06 161.98 162.12 -4.8916 5 3 2 0 0 0 0.72406 1 32779 32779 8.7454 2.0222 1 20334000 + 9504 17020 6083 6087 9624 9624 -0.10393841254881409 EAYFAIQPR 9 Unmodified _EAYFAIQPR_ 0 0 0 nc|ENSG00000151615|Q12837-2|POU4F2;ENSG00000091010|ENST00000646991|POU4F3;ENSG00000151615|ENST00000281321|POU4F2 nc|ENSG00000151615|Q12837-2|POU4F2 nc|ENSG00000151615|Q12837-2|POU4F2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7843017578125 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 15.298 1 14.076 13.576 14.576 -1.2219 0 0 0 0.23508 1 2131 2131 4.3292 0.38484 1 9505 1800 6084 6088 9625 9625 0.012608588174998658 EAYHPDKVK 9 Unmodified _EAYHPDKVK_ 0 0 0 REV__nc|ENSG00000170004|Q12873-3|CHD3 REV__nc|ENSG00000170004|Q12873-3|CHD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7830200195312 2 543.782556 1085.55056 0.28691 0.00015601 -0.17133 -9.3165E-05 0.11558 6.285E-05 543.78235821687 86.286 0.8774 86.286 85.859 86.737 0 57 24 4 0 0 0 0.68435 1 16908 16908 7.2892 0 1 6344800 + 9506 24159 6085 6089 9626 9626 0.01120554954900399 EAYIAKQKQ 9 Unmodified _EAYIAKQKQ_ 0 0 0 GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 97.515 1 93.418 92.918 93.918 -4.0978 0 0 0 0.23508 1 19135 19135 8.1555 0 1 9507 11844 6086 6090 9627 9627 0.0461712798901317 EAYIAKQKQ 9 Unmodified _EAYIAKQKQ_ 0 0 0 GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 97.776 1 93.678 93.178 94.178 -4.0978 0 0 0 0.23508 1 19191 19191 8.1555 0 1 9508 11844 6086 6090 9628 9628 0.0461712798901317 EAYIAKQKQ 9 Unmodified _EAYIAKQKQ_ 0 0 0 GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 98.033 1 93.935 93.435 94.435 -4.0978 0 0 0 0.23508 1 19247 19247 8.1555 0 1 9509 11844 6086 6090 9629 9629 0.0461712798901317 EAYIAKQKQ 9 Unmodified _EAYIAKQKQ_ 0 0 0 GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 97.74 1 93.505 93.005 94.005 -4.2348 0 0 0 0.23508 1 18673 18673 8.1555 0 1 9510 11844 6086 6090 9630 9630 0.0461712798901317 EAYIAKQKQ 9 Unmodified _EAYIAKQKQ_ 0 0 0 GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 97.963 1 93.694 93.194 94.194 -4.2692 0 0 0 0.23508 1 18721 18721 8.1555 0 1 9511 11844 6086 6090 9631 9631 0.0461712798901317 EAYIAKQKQ 9 Unmodified _EAYIAKQKQ_ 0 0 0 GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2020568847656 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 98.187 1 93.918 93.418 94.418 -4.2692 0 0 0 0.23508 1 18764 18764 8.1555 0 1 9512 11844 6086 6090 9632 9632 0.0461712798901317 EAYIAKQKQ 9 Unmodified _EAYIAKQKQ_ 0 0 0 GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant GDAP1|p.R191Q|1|0.37|ENSG00000104381|chr8:74361971-74361971|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20184326171875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 98.439 1 94.169 93.669 94.669 -4.2692 0 0 0 0.23508 1 18816 18816 8.1555 0 1 9513 11844 6086 6090 9633 9633 0.0461712798901317 EAYKERKR 8 Unmodified _EAYKERKR_ 0 0 0 REV__ENSG00000128908|ENST00000648947|INO80 REV__ENSG00000128908|ENST00000648947|INO80 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.02783203125 3 360.536724 1078.58834 -0.26529 -9.5645E-05 0.73357 0.00026448 0.46828 0.00016883 360.8713460250207 45.342 0.46496 42.552 42.31 42.775 -2.79 16 12 2 0 0 0 1.0267 1 8531 8531 3.5965 1.8542 1 581960 + 9514 15939 6087 6091 9634 9634 0.05219065940377732 EAYKERKR 8 Unmodified _EAYKERKR_ 0 0 0 REV__ENSG00000128908|ENST00000648947|INO80 REV__ENSG00000128908|ENST00000648947|INO80 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 360.536724 1078.58834 -0.018897 -6.8132E-06 -0.20081 -7.2401E-05 -0.21971 -7.9214E-05 360.536657978465 45.36 0.38596 42.495 42.271 42.657 -2.8653 -0.028875 -0.00058828 NaN 3.5965 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 417640 + 9515 15939 6087 6091 0.05219065940377732 EAYLCAKY 8 Unmodified _EAYLCAKY_ 0 0 0 REV__ENSG00000196659|ENST00000408939|TTC30B REV__ENSG00000196659|ENST00000408939|TTC30B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25048828125 2 480.728403 959.442254 -0.14438 -6.9406E-05 -2.8776 -0.0013833 -3.0219 -0.0014527 480.72824441215306 47.178 0.38064 44.228 44.053 44.433 -2.9499 12 10 2 0 0 0 0.99494 1 8589 8589 13.508 9.1786 1 709230 + 9516 19270 6088 6092 9635 9635 -0.03908952619883621 EAYLQFLARY 10 Unmodified _EAYLQFLARY_ 0 0 0 REV__ENSG00000232125|ENST00000452335|DYTN REV__ENSG00000232125|ENST00000452335|DYTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2387390136719 3 425.224034 1272.65027 0.11036 4.6928E-05 -0.44119 -0.0001876 -0.33083 -0.00014067 425.2237423335518 32.579 0.72891 32.579 32.296 33.025 0 27 20 2 0 0 0 0.74847 1 5971 5971 6.1918 0 1 803040 + 9517 19749 6089 6093 9636 9636 0.024853725688444683 EAYRKAEL 8 Unmodified _EAYRKAEL_ 0 0 0 tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26275634765625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 17.1 1 15.827 15.327 16.327 -1.2722 0 0 0 0.21486 1 2498 2498 4.756 0 1 9518 26509 6090 6094 9637 9637 0.023328834091330464 EAYSHCCD 8 Unmodified _EAYSHCCD_ 0 0 0 REV__nc|ENSG00000102445|Q9H714-3|RUBCNL REV__nc|ENSG00000102445|Q9H714-3|RUBCNL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.1513671875 2 464.152203 926.289852 NaN NaN NaN NaN NaN NaN NaN 26.977 1 25.055 24.555 25.555 -1.9222 0 0 0 0.21486 1 4488 4488 2.5775 0.27475 1 + 9519 14839 6091 6095 9638 9638 -0.17624096358952102 EAYSLIQR 8 Unmodified _EAYSLIQR_ 0 0 0 CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant;nc|ENSG00000188596|Q96N23-2|CFAP54;ENSG00000188596|ENST00000524981|CFAP54 CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2633361816406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 34.183 1 31.967 31.467 32.467 -2.2158 0 0 0 0.2343 1 5981 5981 0.62683 0 1 9520 502 6092 6096 9639 9639 0.02332883409144415 EAYSLQKQL 9 Unmodified _EAYSLQKQL_ 0 0 0 ENSG00000000460|ENST00000359326|C1orf112 ENSG00000000460|ENST00000359326|C1orf112 ENSG00000000460|ENST00000359326|C1orf112 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2750244140625 2 540.290214 1078.56587 0.29143 0.00015746 -0.33148 -0.0001791 -0.040048 -2.1638E-05 540.2899830012302 98.306 0.80471 94.037 93.672 94.477 -4.2692 76 22 4 0 0 0 0.46598 1 18728 18728 1.2148 0.94944 1 27146000 9521 951 6093 6097 9640 9640 0.029734217520854145 EAYSSSAAAV 10 Unmodified _EAYSSSAAAV_ 0 0 0 CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1;CAMTA1|p.K1259Ifs*22|1|0.18|ENSG00000171735|chr1:7738075-7738076|-/TACAACT|frameshift_variant CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7232971191406 2 478.221997 954.429441 -0.40144 -0.00019198 0.44168 0.00021122 0.040242 1.9245E-05 478.2221645391981 36.848 2.0909 34.379 33.482 35.573 -2.4688 156 59 4 0 0 0 0.57735 1 6987 6987 20.454 1.1966 1 13145000 9522 375 6094 6098 9641 9641 -0.04959692478416855 EAYSSSAAAV 10 Unmodified _EAYSSSAAAV_ 0 0 0 CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1;CAMTA1|p.K1259Ifs*22|1|0.18|ENSG00000171735|chr1:7738075-7738076|-/TACAACT|frameshift_variant CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7228088378906 2 478.221997 954.429441 0.098716 4.7208E-05 -0.16577 -7.9277E-05 -0.067059 -3.2069E-05 478.2219118001858 36.817 2.1067 34.469 33.582 35.688 -2.3479 167 60 4 0 0 0 0.57735 1 6713 6713 20.454 1.1966 1 8798600 9523 375 6094 6098 9642 9642 -0.04959692478416855 EAYSSSAAAV 10 Unmodified _EAYSSSAAAV_ 0 0 0 CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1;CAMTA1|p.K1259Ifs*22|1|0.18|ENSG00000171735|chr1:7738075-7738076|-/TACAACT|frameshift_variant CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72296142578125 2 478.221997 954.429441 0.25758 0.00012318 -0.28954 -0.00013847 -0.031969 -1.5288E-05 478.2218365195836 37.001 2.0618 34.664 33.609 35.671 -2.3375 141 58 3 0 0 0 0.57735 1 6683 6683 20.454 5.6154 1 7079900 9524 375 6094 6098 9643 9643 -0.04959692478416855 EAYTAVVY 8 Unmodified _EAYTAVVY_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1091Lfs*4|1|0.38|ENSG00000116641|chr1:62539572-62539572|A/-|frameshift_variant;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22772216796875 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 56.89 1 53.701 53.201 54.201 -3.1895 0 0 0 0.21486 1 10553 10553 5.7604 0 1 9525 2937 6095 6099 9644 9644 -0.022092991220915792 EAYVNDLLE 9 Unmodified _EAYVNDLLE_ 0 0 0 REV__TRIO|p.D697N|1|0.19|ENSG00000038382|chr5:14358220-14358220|G/A|missense_variant REV__TRIO|p.D697N|1|0.19|ENSG00000038382|chr5:14358220-14358220|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2808837890625 2 533.258579 1064.50261 NaN NaN NaN NaN NaN NaN NaN 29.112 1 27.115 26.615 27.615 -1.9962 0 0 0 0.23508 1 4938 4938 13.042 0 1 + 9526 25483 6096 6100 9645 9645 -0.02706563755782554 EAYVQALEG 9 Unmodified _EAYVQALEG_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26495361328125 2 490.24019 978.465826 0.060639 2.9728E-05 0.10189 4.9953E-05 0.16253 7.968E-05 490.2402902463071 89.374 0.59991 89.374 88.93 89.53 0 24 16 2 0 0 0 0.62102 1 17407 17407 11.64 0 1 2590700 9527 4656 6097 6101 9646 9646 -0.024268155817139814 EAYVQALEG 9 Unmodified _EAYVQALEG_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26495361328125 2 490.24019 978.465826 -0.17667 -8.6609E-05 0.13046 6.3956E-05 -0.046207 -2.2653E-05 490.24030647023017 93.259 0.59077 89.415 89.158 89.748 -3.844 26 16 2 0 0 0 0.62102 1 17833 17833 11.64 0 1 1856200 9528 4656 6097 6101 9647 9647 -0.024268155817139814 EAYVQILA 8 Unmodified _EAYVQILA_ 0 0 0 REV__nc|ENSG00000153317|Q9ULH1-2|ASAP1 REV__nc|ENSG00000153317|Q9ULH1-2|ASAP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7507629394531 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 103.44 1 99.229 98.729 99.729 -4.2135 0 0 0 0.21486 1 20338 20338 9.3474 0 1 + 9529 17145 6098 6102 9648 9648 0.029309801489148413 EAYWFLGQA 9 Unmodified _EAYWFLGQA_ 0 0 0 ENST00000475983.1_1_19:40877588-40880546:+|nuORF;ENSG00000105223|ENST00000409735|PLD3 ENST00000475983.1_1_19:40877588-40880546:+|nuORF ENST00000475983.1_1_19:40877588-40880546:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7891235351562 2 542.758549 1083.50255 0.29051 0.00015767 -0.73584 -0.00039938 -0.44533 -0.00024171 542.7565407136689 54.211 0.92131 54.211 53.674 54.595 0 65 25 4 0 0 0 0.42844 1 10365 10365 24.021 0.23079 1 3776800 9530 2288 6099 6103 9649 9649 -0.03586518965130381 EAYWFLGQA 9 Unmodified _EAYWFLGQA_ 0 0 0 ENST00000475983.1_1_19:40877588-40880546:+|nuORF;ENSG00000105223|ENST00000409735|PLD3 ENST00000475983.1_1_19:40877588-40880546:+|nuORF ENST00000475983.1_1_19:40877588-40880546:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7911987304688 2 542.758549 1083.50255 0.090927 4.9351E-05 -0.69108 -0.00037509 -0.60015 -0.00032574 542.7568326081871 57.449 1.196 54.198 53.696 54.892 -3.2517 79 33 4 0 0 0 0.2219 1 10651 10651 36.127 11.136 1 2922000 9531 2288 6099 6103 9650 9650 -0.03586518965130381 EAYWFLGQA 9 Unmodified _EAYWFLGQA_ 0 0 0 ENST00000475983.1_1_19:40877588-40880546:+|nuORF;ENSG00000105223|ENST00000409735|PLD3 ENST00000475983.1_1_19:40877588-40880546:+|nuORF ENST00000475983.1_1_19:40877588-40880546:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7761840820312 2 542.758549 1083.50255 0.14504 7.8719E-05 -0.75192 -0.00040811 -0.60689 -0.00032939 542.7569346007443 57.686 1.1611 54.481 53.758 54.919 -3.2052 78 30 3 0 0 0 0.34411 1 10753 10753 29.082 5.2918 1 2898000 9532 2288 6099 6103 9651 9651 -0.03586518965130381 ECACSEDP 8 Unmodified _ECACSEDP_ 0 0 0 ENSG00000283071|ENST00000634353|LBHD2 ENSG00000283071|ENST00000634353|LBHD2 ENSG00000283071|ENST00000634353|LBHD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.13885498046875 2 427.138761 852.262969 NaN NaN NaN NaN NaN NaN NaN 146.44 1 141.44 140.94 141.94 -5 0 0 0 0.21486 1 28338 28338 2.5775 0 1 9533 8052 6100 6104 9652 9652 -0.16907204970141265 ECCCCCCCDLF 11 Unmodified _ECCCCCCCDLF_ 0 0 0 REV__ENSG00000170075|ENST00000367282|GPR37L1 REV__ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7606811523438 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 153.62 1 148.85 148.35 149.35 -4.7684 0 0 0 0.22632 1 30530 30530 0.026206 0.012396 1 + 9534 18139 6101 6105 9653 9653 -0.31504650452575333 ECCCCCCEMFA 11 Unmodified _ECCCCCCEMFA_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7698974609375 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 130.36 1 130.36 129.86 130.86 0 0 0 0 0.23698 1 25766 25766 0.35063 0.35063 1 + 9535 18178 6102 6106 9654 9654 -0.31504650452575333 ECDDGDLVS 9 Unmodified _ECDDGDLVS_ 0 0 0 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.1548767089844 3 318.123657 951.349141 NaN NaN NaN NaN NaN NaN NaN 114.18 1 109.87 109.37 110.37 -4.3136 0 0 0 0.23508 1 21994 21994 0.96228 0.56156 1 9536 2913 6103 6107 9655 9655 -0.12847921863772171 ECEQYLRLLAR 11 Unmodified _ECEQYLRLLAR_ 0 0 0 REV__nc|ENSG00000120694|Q92598-2|HSPH1 REV__nc|ENSG00000120694|Q92598-2|HSPH1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24847412109375 3 465.246733 1392.71837 NaN NaN NaN NaN NaN NaN NaN 143.47 1 138.44 137.94 138.94 -5.0261 0 0 0 0.22632 1 27658 27658 1.4551 0 1 + 9537 15629 6104 6108 9656 9656 0.0377187415717799 ECGDNSDEDHC 11 Unmodified _ECGDNSDEDHC_ 0 0 0 LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 612.1820678710938 2 612.182417 1222.35028 NaN NaN NaN NaN NaN NaN NaN 27.439 1 25.684 25.184 26.184 -1.7552 0 0 0 0.23698 1 4593 4593 0.26902 0.26902 1 9538 5927 6105 6109 9657 9657 -0.25200075557177115 ECGHPGPG 8 Unmodified _ECGHPGPG_ 0 0 0 ENST00000572067.1_1_16:67918638-67918992:+|nuORF ENST00000572067.1_1_16:67918638-67918992:+|nuORF ENST00000572067.1_1_16:67918638-67918992:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 377.1778869628906 2 377.152863 752.291173 NaN NaN NaN NaN NaN NaN NaN 34.247 1 32.031 31.531 32.531 -2.2158 0 0 0 0.2396 1 5995 5995 0.12286 0 1 9539 11429 6106 6110 9658 9658 -0.0948809420787029 ECMSCSMDCD 10 Unmodified _ECMSCSMDCD_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK nc|ENSG00000152894|Q15262|PTPRK nc|ENSG00000152894|Q15262|PTPRK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21392822265625 3 375.100484 1122.27962 NaN NaN NaN NaN NaN NaN NaN 177.26 1 172.47 171.97 172.97 -4.7898 0 0 0 2.8426 1 36253 36253 0 0 1 9540 4944 6107 6111 9659 9659 -0.2766253146235158 ECMSCSMDCD 10 Unmodified _ECMSCSMDCD_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK nc|ENSG00000152894|Q15262|PTPRK nc|ENSG00000152894|Q15262|PTPRK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21392822265625 3 375.100484 1122.27962 NaN NaN NaN NaN NaN NaN NaN 177.27 1 172.48 171.98 172.98 -4.7898 0 0 0 0.22588 1 36256 36256 0 0 1 9541 4944 6107 6111 9660 9660 -0.2766253146235158 ECNLERSWTLK 11 Unmodified _ECNLERSWTLK_ 0 0 0 REV__ENST00000515013.5_1_4:81112705-81118128:+|nuORF REV__ENST00000515013.5_1_4:81112705-81118128:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2314453125 3 460.230971 1377.67108 NaN NaN NaN NaN NaN NaN NaN 22.321 1 22.321 21.821 22.821 0 0 0 0 0.22632 1 3772 3772 0.026206 0 1 + 9542 22582 6108 6112 9661 9661 -0.002644051138076975 ECQQCYCRPMW 11 Unmodified _ECQQCYCRPMW_ 0 0 0 ENST00000460722.1_1_4:1718909-1719921:-|nuORF;ENST00000476253.1_1_4:1718909-1719614:-|nuORF;ENSG00000168936|ENST00000382936|TMEM129 ENST00000460722.1_1_4:1718909-1719921:-|nuORF ENST00000460722.1_1_4:1718909-1719921:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 482.8379821777344 3 482.852232 1445.53487 NaN NaN NaN NaN NaN NaN NaN 10.114 1 9.0208 8.5208 9.5208 -1.0936 0 0 0 0.23698 1 1130 1130 0 0 1 9543 5952 6109 6113 9662 9662 -0.17007882211987635 ECRSAKTER 9 Unmodified _ECRSAKTER_ 0 0 0 REV__PRC1|p.R171C|1|0.2|ENSG00000198901|chr15:90981660-90981660|G/A|missense_variant REV__PRC1|p.R171C|1|0.2|ENSG00000198901|chr15:90981660-90981660|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2682495117188 2 540.266747 1078.51894 1.3167 0.00071139 -0.93142 -0.00050321 0.38532 0.00020818 540.2662954128837 25.246 0.6629 23.598 23.303 23.966 -1.6482 37 18 3 0 0 0 0.63318 1 4385 4385 0.073264 0 1 3371600 + 9544 24504 6110 6114 9663 9663 -0.01717761070699453 ECTECGKAFTR 11 Unmodified _ECTECGKAFTR_ 0 0 0 ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484;nc|ENSG00000127081|Q5JVG2-2|ZNF484 ENSG00000127081|ENST00000375495|ZNF484 ENSG00000127081|ENST00000375495|ZNF484 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7735595703125 2 622.773548 1243.53254 NaN NaN NaN NaN NaN NaN NaN 16.135 1 14.782 14.282 15.282 -1.3534 0 0 0 0.23698 1 2270 2270 1.0715 0.5467 1 9545 3461 6111 6115 9664 9664 -0.07948271353780001 ECVELMWTA 9 Unmodified _ECVELMWTA_ 0 0 0 REV__nc|ENSG00000118971|P30279-2|CCND2 REV__nc|ENSG00000118971|P30279-2|CCND2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2762451171875 2 541.238278 1080.462 0.91109 0.00049312 -0.39583 -0.00021424 0.51526 0.00027888 541.2379658260822 22.79 0.51523 21.237 20.991 21.507 -1.5532 23 14 2 0 0 0 0.5428 1 3921 3921 4.897 2.3985 1 937090 + 9546 15193 6112 6116 9665 9665 -0.07500944671437537 ECYFHSKCY 9 Unmodified _ECYFHSKCY_ 0 0 0 ENST00000579585.5_1_17:61771490-61771586:+|nuORF ENST00000579585.5_1_17:61771490-61771586:+|nuORF ENST00000579585.5_1_17:61771490-61771586:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2635498046875 2 590.233527 1178.4525 0.37978 0.00022416 -0.7028 -0.00041482 -0.32302 -0.00019066 590.2330134994938 43.51 0.84295 40.791 40.482 41.325 -2.7191 66 23 4 0 0 0 0.6231 1 8242 8242 0.40827 0.14288 1 13978000 9547 11486 6113 6117 9666 9666 -0.12958712956947238 EDAAILLQ 8 Unmodified _EDAAILLQ_ 0 0 0 nc|ENSG00000014123|O94874-3|UFL1;nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1 nc|ENSG00000014123|O94874-3|UFL1 nc|ENSG00000014123|O94874-3|UFL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22784423828125 2 436.739825 871.465098 NaN NaN NaN NaN NaN NaN NaN 103.83 1 103.83 103.33 104.33 0 0 0 0 0.21486 1 20406 20406 11.64 0 1 9548 1104 6114 6118 9667 9667 0.024223897692422725 EDAAILLQ 8 Unmodified _EDAAILLQ_ 0 0 0 nc|ENSG00000014123|O94874-3|UFL1;nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1 nc|ENSG00000014123|O94874-3|UFL1 nc|ENSG00000014123|O94874-3|UFL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2164611816406 2 436.739825 871.465098 NaN NaN NaN NaN NaN NaN NaN 103.85 1 103.85 103.35 104.35 0 0 0 0 0.21486 1 20411 20411 12.532 0 1 9549 1104 6114 6118 9668 9668 0.024223897692422725 EDAATPRPP 9 Unmodified _EDAATPRPP_ 0 0 0 TLE6|p.S208A|1|0.24|ENSG00000104953|chr19:2987787-2987787|T/G|missense_variant TLE6|p.S208A|1|0.24|ENSG00000104953|chr19:2987787-2987787|T/G|missense_variant TLE6|p.S208A|1|0.24|ENSG00000104953|chr19:2987787-2987787|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74261474609375 2 477.237981 952.461409 -0.44171 -0.0002108 0.53449 0.00025508 0.092782 4.4279E-05 477.23809120058013 23.222 0.60823 21.433 21.091 21.699 -1.7886 55 17 4 0 0 0 0.60805 1 3698 3698 12.532 0.89125 1 2842700 9550 25852 6115 6119 9669 9669 -0.016722800046181874 EDAATPRPP 9 Unmodified _EDAATPRPP_ 0 0 0 TLE6|p.S208A|1|0.24|ENSG00000104953|chr19:2987787-2987787|T/G|missense_variant TLE6|p.S208A|1|0.24|ENSG00000104953|chr19:2987787-2987787|T/G|missense_variant TLE6|p.S208A|1|0.24|ENSG00000104953|chr19:2987787-2987787|T/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.237981 952.461409 -0.10878 -5.1916E-05 0.052678 2.514E-05 -0.056107 -2.6776E-05 477.2379603681663 21.458 0.57998 21.458 21.124 21.704 0 0.0082772 -0.00012085 NaN 12.532 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4637000 9551 25852 6115 6119 -0.016722800046181874 EDAATPRPP 9 Unmodified _EDAATPRPP_ 0 0 0 TLE6|p.S208A|1|0.24|ENSG00000104953|chr19:2987787-2987787|T/G|missense_variant TLE6|p.S208A|1|0.24|ENSG00000104953|chr19:2987787-2987787|T/G|missense_variant TLE6|p.S208A|1|0.24|ENSG00000104953|chr19:2987787-2987787|T/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.237981 952.461409 -0.10447 -4.9859E-05 -0.032848 -1.5676E-05 -0.13732 -6.5535E-05 477.2379122267652 22.911 0.52571 21.457 21.19 21.716 -1.4535 0.0079317 -0.00020248 NaN 12.532 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3389700 9552 25852 6115 6119 -0.016722800046181874 EDACHLLA 8 Unmodified _EDACHLLA_ 0 0 0 PPP1R12C|p.R277H|1|0.48|ENSG00000125503|chr19:55098997-55098997|C/T|missense_variant PPP1R12C|p.R277H|1|0.48|ENSG00000125503|chr19:55098997-55098997|C/T|missense_variant PPP1R12C|p.R277H|1|0.48|ENSG00000125503|chr19:55098997-55098997|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2161865234375 2 436.202553 870.390553 0.10154 4.429E-05 1.1065 0.00048264 1.208 0.00052693 436.2029736566898 96.329 0.96938 96.329 95.906 96.875 0 64 27 3 0 0 0 0.73426 1 18865 18865 9.3474 2.9933 1 6851900 9553 12820 6116 6120 9670 9670 -0.049826963137888924 EDACHLLA 8 Unmodified _EDACHLLA_ 0 0 0 PPP1R12C|p.R277H|1|0.48|ENSG00000125503|chr19:55098997-55098997|C/T|missense_variant PPP1R12C|p.R277H|1|0.48|ENSG00000125503|chr19:55098997-55098997|C/T|missense_variant PPP1R12C|p.R277H|1|0.48|ENSG00000125503|chr19:55098997-55098997|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21746826171875 2 436.202553 870.390553 0.24206 0.00010559 0.96057 0.000419 1.2026 0.00052459 436.20290506648996 100.52 0.95769 96.219 95.816 96.774 -4.297 65 27 3 0 0 0 0.70613 2 19190 19190;19229 13.508 4.9146 1 5943100 9554 12820 6116 6120 9671;9672 9671 -0.049826963137888924 EDACHLLA 8 Unmodified _EDACHLLA_ 0 0 0 PPP1R12C|p.R277H|1|0.48|ENSG00000125503|chr19:55098997-55098997|C/T|missense_variant PPP1R12C|p.R277H|1|0.48|ENSG00000125503|chr19:55098997-55098997|C/T|missense_variant PPP1R12C|p.R277H|1|0.48|ENSG00000125503|chr19:55098997-55098997|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.202553 870.390553 -0.10858 -4.7365E-05 1.2339 0.00053824 1.1253 0.00049088 436.20308062119034 100.27 1.1149 96.113 95.519 96.634 -4.1594 -0.11155 0.00013604 NaN 13.508 71 31 3 NaN NaN NaN NaN 0 NaN NaN 0 6768200 9555 12820 6116 6120 -0.049826963137888924 EDACHLLA 8 Unmodified _EDACHLLA_ 0 0 0 PPP1R12C|p.R277H|1|0.48|ENSG00000125503|chr19:55098997-55098997|C/T|missense_variant PPP1R12C|p.R277H|1|0.48|ENSG00000125503|chr19:55098997-55098997|C/T|missense_variant PPP1R12C|p.R277H|1|0.48|ENSG00000125503|chr19:55098997-55098997|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 436.202553 870.390553 0.12032 5.2484E-05 1.0351 0.00045153 1.1555 0.00050401 436.2029713978455 100.23 1.1291 96.237 95.763 96.892 -3.9895 0.012188 -3.7393E-05 NaN 13.508 54 32 2 NaN NaN NaN NaN 0 NaN NaN 0 6527800 9556 12820 6116 6120 -0.049826963137888924 EDADEVGIAF 10 Unmodified _EDADEVGIAF_ 0 0 0 REV__COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant REV__COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2685546875 2 533.240386 1064.46622 NaN NaN NaN NaN NaN NaN NaN 135.06 1 135.06 134.56 135.56 0 0 0 0 0.22588 1 26746 26746 10.824 2.2306 1 + 9557 13496 6117 6121 9673 9673 -0.06343440652517529 EDAEHHPDE 9 Unmodified _EDAEHHPDE_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 3 360.140587 1077.39993 NaN NaN NaN NaN NaN NaN NaN 55.062 1 55.062 54.562 55.562 0 0 0 0 0.23508 1 10503 10503 4.5289 0.58447 1 9558 2059 6118 6122 9674 9674 -0.13567256494570756 EDAEIMHLAL 10 Unmodified _EDAEIMHLAL_ 0 0 0 RSPH6A|p.P606L|1|0.08|ENSG00000104941|chr19:45800545-45800545|G/A|missense_variant RSPH6A|p.P606L|1|0.08|ENSG00000104941|chr19:45800545-45800545|G/A|missense_variant RSPH6A|p.P606L|1|0.08|ENSG00000104941|chr19:45800545-45800545|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20721435546875 3 381.190113 1140.54851 NaN NaN NaN NaN NaN NaN NaN 77.345 1 73.881 73.381 74.381 -3.4633 0 0 0 0.22588 1 15099 15099 9.544 3.3521 1 9559 25626 6119 6123 9675 9675 -0.01614241845209108 EDAELYDDLY 10 Unmodified _EDAELYDDLY_ 0 0 0 ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21 ENSG00000168724|ENST00000648817|DNAJC21 ENSG00000168724|ENST00000648817|DNAJC21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.76611328125 2 623.261516 1244.50848 0.094134 5.867E-05 1.5943 0.00099369 1.6885 0.0010524 623.2611869380848 60.054 0.17515 60.054 59.963 60.138 0 6 4 2 0 0 0 0.83242 1 11499 11499 14.838 4.7643 1 626940 9560 5929 6120 6124 9676 9676 -0.1039951003481292 EDAFELADA 9 Unmodified _EDAFELADA_ 0 0 0 REV__ENST00000462798.1_1_1:6592521-6593409:-|nuORF REV__ENST00000462798.1_1_1:6592521-6593409:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2554931640625 2 490.714005 979.413456 0.19934 9.7821E-05 1.3951 0.00068459 1.5944 0.00078241 490.7148380792696 32.767 0.31905 30.618 30.452 30.771 -2.1483 13 8 2 0 0 0 0.84208 1 5682 5682 11.64 4.3511 1 558300 + 9561 17495 6121 6125 9677 9677 -0.07707398715319869 EDAFELADA 9 Unmodified _EDAFELADA_ 0 0 0 REV__ENST00000462798.1_1_1:6592521-6593409:-|nuORF REV__ENST00000462798.1_1_1:6592521-6593409:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 490.714005 979.413456 0.20012 9.82E-05 1.6662 0.00081764 1.8663 0.00091584 490.71498356074807 32.846 0.34933 30.615 30.399 30.749 -2.2305 -0.0015798 0.00016683 NaN 16.942 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 533560 + 9562 17495 6121 6125 -0.07707398715319869 EDAKAKVL 8 Unmodified _EDAKAKVL_ 0 0 0 DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;ENSG00000137628|ENST00000393743|DDX60;DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21820068359375 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 44.276 1 41.486 40.986 41.986 -2.79 0 0 0 0.2074 1 8317 8317 19.439 3.5918 1 9563 808;807 6122 6126 9678 9678 0.05538382523195651 EDALCVFHPMV 11 Unmodified _EDALCVFHPMV_ 0 0 0 REV__ENSG00000187479|ENST00000617612|C11orf96 REV__ENSG00000187479|ENST00000617612|C11orf96 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.76416015625 2 630.791209 1259.56787 NaN NaN NaN NaN NaN NaN NaN 115.87 1 111.51 111.01 112.01 -4.3585 0 0 0 0.2196 1 22306 22306 0.11104 0 1 + 9564 19089 6123 6127 9679 9679 -0.05153608825958145 EDALKPQE 8 Unmodified _EDALKPQE_ 0 0 0 ENSG00000151612|ENST00000508784|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;nc|ENSG00000151612|Q17R98-3|ZNF827 ENSG00000151612|ENST00000508784|ZNF827 ENSG00000151612|ENST00000508784|ZNF827 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2494812011719 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 85.069 1 81.405 80.905 81.905 -3.6641 0 0 0 0.21486 1 16631 16631 9.3474 0 1 9565 4876 6124 6128 9680 9680 -0.01691102098754982 EDALLQQL 8 Unmodified _EDALLQQL_ 0 0 0 nc|ENSG00000100162|Q9NSP4-2|CENPM;ENST00000396437.3_1_22:42341142-42343146:-|nuORF;ENST00000460824.1_1_22:42342419-42343080:-|nuORF;nc|ENSG00000100162|Q9NSP4-4|CENPM;ENSG00000100162|ENST00000215980|CENPM nc|ENSG00000100162|Q9NSP4-2|CENPM nc|ENSG00000100162|Q9NSP4-2|CENPM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2508544921875 2 465.250557 928.486562 -0.031476 -1.4644E-05 -0.12596 -5.8605E-05 -0.15744 -7.3249E-05 465.2503688211382 115.64 1.3797 111.17 110.64 112.02 -4.4726 64 39 3 0 0 0 0.69887 1 22926 22926 14.582 1.0738 1 3965800 9566 9445 6125 6129 9681 9681 0.01945774797957256 EDANRKTFTV 10 Unmodified _EDANRKTFTV_ 0 0 0 CADM2|p.L281Pfs*5|1|0.15|ENSG00000175161|chr3:85961546-85961549|TAAA/-|frameshift_variant;ENSG00000175161|ENST00000383699|CADM2;nc|ENSG00000175161|Q8N3J6|CADM2;nc|ENSG00000175161|Q8N3J6-3|CADM2;nc|ENSG00000175161|Q8N3J6-4|CADM2;nc|ENSG00000175161|Q8N3J6-5|CADM2 CADM2|p.L281Pfs*5|1|0.15|ENSG00000175161|chr3:85961546-85961549|TAAA/-|frameshift_variant CADM2|p.L281Pfs*5|1|0.15|ENSG00000175161|chr3:85961546-85961549|TAAA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2671508789062 2 590.801477 1179.5884 -0.060092 -3.5502E-05 0.31811 0.00018794 0.25802 0.00015244 590.8016481564712 49.883 0.51273 46.876 46.564 47.077 -3.0068 23 14 2 0 0 0 0.89521 1 9110 9110 10.824 0 1 1819500 9567 366 6126 6130 9682 9682 0.005790211497242126 EDAPEKCH 8 Unmodified _EDAPEKCH_ 0 0 0 ENSG00000170745|ENST00000304101|KCNS3 ENSG00000170745|ENST00000304101|KCNS3 ENSG00000170745|ENST00000304101|KCNS3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2559509277344 2 464.695092 927.375631 0.33597 0.00015612 -0.3116 -0.0001448 0.024366 1.1323E-05 464.6948463513841 21.044 0.38574 19.57 19.42 19.806 -1.4742 21 10 3 0 0 0 0.97966 1 3564 3564 11.64 0 1 1185700 9568 6093 6127 6131 9683 9683 -0.09096188181786147 EDAPNGQSY 9 Unmodified _EDAPNGQSY_ 0 0 0 REV__ENST00000544307.1_1_12:20725060-20833202:+|nuORF REV__ENST00000544307.1_1_12:20725060-20833202:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.263916015625 2 490.701429 979.388304 -0.015395 -7.5544E-06 1.1505 0.00056453 1.1351 0.00055697 490.7031382688913 56.955 0.55645 56.955 56.572 57.128 0 26 15 2 0 0 0 0.80521 1 10866 10866 6.7232 2.7788 1 1610800 + 9569 18294 6128 6132 9684 9684 -0.10221453517885948 EDAPPQPPPP 10 Unmodified _EDAPPQPPPP_ 0 0 0 REV__nc|ENSG00000110721|P35790-2|CHKA REV__nc|ENSG00000110721|P35790-2|CHKA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6860961914062 2 522.753464 1043.49238 0.38725 0.00020244 -0.5761 -0.00030116 -0.18885 -9.8721E-05 522.7531287557395 28.5 1.0809 26.503 26.064 27.145 -1.9962 77 30 3 0 0 0 0.7323 1 4742 4742 7.9102 1.7044 1 16576000 + 9570 15215 6129 6133 9685 9685 -0.027631266903881624 EDAQHGARY 9 Unmodified _EDAQHGARY_ 0 0 0 REV__nc|ENSG00000172794|Q96AX2-4|RAB37 REV__nc|ENSG00000172794|Q96AX2-4|RAB37 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6962890625 2 523.736137 1045.45772 NaN NaN NaN NaN NaN NaN NaN 50.885 1 47.833 47.333 48.333 -3.0517 0 0 0 0.23508 1 9361 9361 10.824 1.4765 1 + 9571 18310 6130 6134 9686 9686 -0.06318949778460592 EDAREQLS 8 Unmodified _EDAREQLS_ 0 0 0 REV__ENSG00000164816|ENST00000330590|DEFA5 REV__ENSG00000164816|ENST00000330590|DEFA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1753845214844 3 316.485806 946.435589 -0.061122 -1.9344E-05 -0.64843 -0.00020522 -0.70956 -0.00022456 316.485483614779 79.725 0.56416 75.92 75.612 76.176 -3.8048 25 15 3 0 0 0 0.8748 1 15111 15111 1.7423 0 1 1367500 + 9572 17711 6131 6135 9687 9687 -0.03977174246881532 EDAREQLS 8 Unmodified _EDAREQLS_ 0 0 0 REV__ENSG00000164816|ENST00000330590|DEFA5 REV__ENSG00000164816|ENST00000330590|DEFA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 316.485806 946.435589 -0.28553 -9.0366E-05 -0.85877 -0.00027179 -1.1443 -0.00036215 316.4854456873826 75.81 0.62141 75.81 75.546 76.167 0 0.0074946 -0.00018922 NaN 1.7423 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2704900 + 9573 17711 6131 6135 -0.03977174246881532 EDAREQLS 8 Unmodified _EDAREQLS_ 0 0 0 REV__ENSG00000164816|ENST00000330590|DEFA5 REV__ENSG00000164816|ENST00000330590|DEFA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 316.485806 946.435589 -0.24627 -7.7942E-05 -0.75261 -0.00023819 -0.99888 -0.00031613 316.48551237099497 79.234 0.59898 75.723 75.344 75.943 -3.5102 -0.078707 -8.8425E-05 NaN 1.7423 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1708400 + 9574 17711 6131 6135 -0.03977174246881532 EDAREQLS 8 Unmodified _EDAREQLS_ 0 0 0 REV__ENSG00000164816|ENST00000330590|DEFA5 REV__ENSG00000164816|ENST00000330590|DEFA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 316.485806 946.435589 -0.77911 -0.00024658 -0.4149 -0.00013131 -1.194 -0.00037789 316.48562429241133 79.431 0.73459 75.755 75.548 76.282 -3.676 -0.046824 0.00023221 NaN 1.7423 24 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1732500 + 9575 17711 6131 6135 -0.03977174246881532 EDARLGRV 8 Unmodified _EDARLGRV_ 0 0 0 SEMA6C|p.P861Lfs*37|2|0.24|ENSG00000143434|chr1:151132695-151132695|G/-|frameshift_variant;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C SEMA6C|p.P861Lfs*37|2|0.24|ENSG00000143434|chr1:151132695-151132695|G/-|frameshift_variant SEMA6C|p.P861Lfs*37|2|0.24|ENSG00000143434|chr1:151132695-151132695|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23260498046875 2 458.253966 914.493378 NaN NaN NaN NaN NaN NaN NaN 79.111 1 75.307 74.807 75.807 -3.8048 0 0 0 0.2343 1 15007 15007 0.30703 0.055553 1 9576 4485 6132 6136 9688 9688 0.032711324691945265 EDATILPSPT 10 Unmodified _EDATILPSPT_ 0 0 0 ENSG00000249751|ENST00000618155|ECSCR ENSG00000249751|ENST00000618155|ECSCR ENSG00000249751|ENST00000618155|ECSCR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2677001953125 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 108.35 1 103.94 103.44 104.44 -4.4121 0 0 0 2.8426 1 20791 20791 1.0651 0 1 9577 7900 6133 6137 9689 9689 -0.001302772387589357 EDATITVRG 9 Unmodified _EDATITVRG_ 0 0 0 REV__nc|ENSG00000280411|A0A0B4J2H0|IGHV1-69D REV__nc|ENSG00000280411|A0A0B4J2H0|IGHV1-69D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2410583496094 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 94.775 1 90.894 90.394 91.394 -3.881 0 0 0 0.21469 1 18186 18186 19.257 3.4098 1 + 9578 24313 6134 6138 9690 9690 0.005799891668630153 EDATVEPL 8 Unmodified _EDATVEPL_ 0 0 0 REV__ENST00000468918.5_1_3:119396099-119396264:-|nuORF REV__ENST00000468918.5_1_3:119396099-119396264:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21527099609375 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 137.4 1 132.56 132.06 133.06 -4.84 0 0 0 0.21486 1 26471 26471 9.3474 0 1 + 9579 22003 6135 6139 9691 9691 -0.028581933643749835 EDAVKFSKY 9 Unmodified _EDAVKFSKY_ 0 0 0 REV__ENSG00000085265|ENST00000371806|FCN1 REV__ENSG00000085265|ENST00000371806|FCN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7771606445312 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 155.01 1 155.01 154.51 155.51 0 0 0 0 0.18966 1 31070 31070 1.2148 1.151 1 + 9580 14472 6136 6140 9692 9692 -2.267139211653557E-05 EDAVKFSKY 9 Unmodified _EDAVKFSKY_ 0 0 0 REV__ENSG00000085265|ENST00000371806|FCN1 REV__ENSG00000085265|ENST00000371806|FCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.775634765625 2 543.776939 1085.53933 0.086393 4.6978E-05 -1.6176 -0.00087961 -1.5312 -0.00083263 543.7760948092308 71.45 0.77656 68.201 67.816 68.593 -3.2492 46 21 3 0 0 0 0.64382 1 13982 13982 10.074 0.6908 1 2543300 + 9581 14472 6136 6140 9693 9693 -2.267139211653557E-05 EDAVKKLL 8 Unmodified _EDAVKKLL_ 0 0 0 REV__KIAA1671|p.R299K|1|0.19|ENSG00000197077|chr22:25028895-25028895|G/A|missense_variant REV__KIAA1671|p.R299K|1|0.19|ENSG00000197077|chr22:25028895-25028895|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22369384765625 2 458.279118 914.543683 NaN NaN NaN NaN NaN NaN NaN 77.952 1 74.293 73.793 74.793 -3.6588 0 0 0 0.2074 1 14848 14848 19.439 4.8573 1 + 9582 23714 6137 6141 9694 9694 0.08299242074338053 EDAVQKKAA 9 Unmodified _EDAVQKKAA_ 0 0 0 REV__LMNB1|p.L184V|1|0.08|ENSG00000113368|chr5:126805604-126805604|T/G|missense_variant REV__LMNB1|p.L184V|1|0.08|ENSG00000113368|chr5:126805604-126805604|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24267578125 2 480.261456 958.50836 -0.33119 -0.00015906 0.24243 0.00011643 -0.088766 -4.2631E-05 480.26147587957615 59.774 0.77992 59.774 59.249 60.029 0 51 21 3 0 0 0 0.68435 1 11427 11427 7.2892 1.0834 1 4232500 + 9583 23800 6138 6142 9695 9695 0.02744579546526893 EDCAELHDY 9 Unmodified _EDCAELHDY_ 0 0 0 ENSG00000181847|ENST00000383671|TIGIT ENSG00000181847|ENST00000383671|TIGIT ENSG00000181847|ENST00000383671|TIGIT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.782470703125 2 547.708396 1093.40224 NaN NaN NaN NaN NaN NaN NaN 73.497 1 70.186 69.686 70.686 -3.3107 0 0 0 0.23508 1 14328 14328 4.756 0.42677 1 9584 6750 6139 6143 9696 9696 -0.1407254408109111 EDCAELHDY 9 Unmodified _EDCAELHDY_ 0 0 0 ENSG00000181847|ENST00000383671|TIGIT ENSG00000181847|ENST00000383671|TIGIT ENSG00000181847|ENST00000383671|TIGIT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7752685546875 2 547.708396 1093.40224 NaN NaN NaN NaN NaN NaN NaN 73.518 1 70.207 69.707 70.707 -3.3107 0 0 0 0.23508 1 14333 14333 4.756 0.42677 1 9585 6750 6139 6143 9697 9697 -0.1407254408109111 EDCCQTKRL 9 Unmodified _EDCCQTKRL_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7694091796875 2 548.249708 1094.48486 0.12664 6.9432E-05 0.29262 0.00016043 0.41926 0.00022986 548.2498595482139 75.34 0.82588 71.924 71.363 72.189 -3.4151 45 23 3 0 0 0 0.84208 1 14637 14637 11.64 11.64 1 10362000 + 9586 15218 6140 6144 9698 9698 -0.05859925553954781 EDCDCAQDENC 11 Unmodified _EDCDCAQDENC_ 0 0 0 ENSG00000180447|ENST00000298743|GAS1 ENSG00000180447|ENST00000298743|GAS1 ENSG00000180447|ENST00000298743|GAS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7705688476562 2 622.678653 1243.34275 NaN NaN NaN NaN NaN NaN NaN 125.32 1 120.73 120.23 121.23 -4.5984 0 0 0 0.23698 1 24709 24709 1.3295 0.92882 1 9587 6675 6141 6145 9699 9699 -0.2691855114910595 EDCDGLEFES 10 Unmodified _EDCDGLEFES_ 0 0 0 ENSG00000089048|ENST00000617257|ESF1 ENSG00000089048|ENST00000617257|ESF1 ENSG00000089048|ENST00000617257|ESF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2119140625 3 381.809738 1142.40738 -0.28676 -0.00010949 0.84963 0.0003244 0.56288 0.00021491 381.81002906954444 86.878 0.94968 83.151 82.728 83.678 -3.727 80 26 4 0 0 0 0.91051 1 16953 16953 3.5871 0 1 23832000 9588 1746 6142 6146 9700 9700 -0.15812285009155858 EDCDGLEFES 10 Unmodified _EDCDGLEFES_ 0 0 0 ENSG00000089048|ENST00000617257|ESF1 ENSG00000089048|ENST00000617257|ESF1 ENSG00000089048|ENST00000617257|ESF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21240234375 3 381.809738 1142.40738 0.2962 0.00011309 0.18506 7.0657E-05 0.48126 0.00018375 381.8097650287691 87 1.017 83.05 82.684 83.701 -3.9503 86 28 4 0 0 0 0.87285 1 16562 16562 5.4027 0 1 28830000 9589 1746 6142 6146 9701 9701 -0.15812285009155858 EDCDPEGSQD 10 Unmodified _EDCDPEGSQD_ 0 0 0 ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant;ENSG00000181652|ENST00000639579|ATG9B;ATG9B|p.P254Sfs*5|1|0.12|ENSG00000181652|chr7:151023103-151023106|ACGG/-|frameshift_variant;nc|ENSG00000181652|Q674R7-3|ATG9B ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7677001953125 2 547.682575 1093.3506 NaN NaN NaN NaN NaN NaN NaN 111.97 1 107.74 107.24 108.24 -4.2289 0 0 0 0.22588 1 21557 21557 1.3295 0.25807 1 9590 254 6143 6147 9702 9702 -0.19234332565656587 EDCELPHSSY 10 Unmodified _EDCELPHSSY_ 0 0 0 ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant;ANKRD26|p.K1452Rfs*7|1|0.29|ENSG00000107890|chr10:27017653-27017653|T/-|frameshift_variant;ANKRD26|p.N1518Lfs*11|1|0.04|ENSG00000107890|chr10:27014666-27014667|-/AGAATCATAGGAAATAA|frameshift_variant;ANKRD26|p.N1518Ifs*14|1|0.04|ENSG00000107890|chr10:27014665-27014666|-/A|frameshift_variant;ANKRD26|p.Y1555Ifs*2|1|0.28|ENSG00000107890|chr10:27014555-27014556|-/T|frameshift_variant;ANKRD26|p.N1659Kfs*4|1|0.3|ENSG00000107890|chr10:27006939-27006940|-/T|frameshift_variant;ENSG00000107890|ENST00000376087|ANKRD26;nc|ENSG00000107890|Q9UPS8-2|ANKRD26 ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2666625976562 2 590.234778 1178.455 NaN NaN NaN NaN NaN NaN NaN 88.109 1 88.109 87.609 88.609 0 0 0 0 2.8426 1 17194 17194 0.043787 0 1 9591 160 6144 6148 9703 9703 -0.1270858601828877 EDCELPHSSY 10 Unmodified _EDCELPHSSY_ 0 0 0 ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant;ANKRD26|p.K1452Rfs*7|1|0.29|ENSG00000107890|chr10:27017653-27017653|T/-|frameshift_variant;ANKRD26|p.N1518Lfs*11|1|0.04|ENSG00000107890|chr10:27014666-27014667|-/AGAATCATAGGAAATAA|frameshift_variant;ANKRD26|p.N1518Ifs*14|1|0.04|ENSG00000107890|chr10:27014665-27014666|-/A|frameshift_variant;ANKRD26|p.Y1555Ifs*2|1|0.28|ENSG00000107890|chr10:27014555-27014556|-/T|frameshift_variant;ANKRD26|p.N1659Kfs*4|1|0.3|ENSG00000107890|chr10:27006939-27006940|-/T|frameshift_variant;ENSG00000107890|ENST00000376087|ANKRD26;nc|ENSG00000107890|Q9UPS8-2|ANKRD26 ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2708129882812 2 590.234778 1178.455 NaN NaN NaN NaN NaN NaN NaN 86 1 82.049 81.549 82.549 -3.9503 0 0 0 0.22588 1 16365 16365 6.2058 0.9089 1 9592 160 6144 6148 9704 9704 -0.1270858601828877 EDCELPHSSY 10 Unmodified _EDCELPHSSY_ 0 0 0 ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant;ANKRD26|p.K1452Rfs*7|1|0.29|ENSG00000107890|chr10:27017653-27017653|T/-|frameshift_variant;ANKRD26|p.N1518Lfs*11|1|0.04|ENSG00000107890|chr10:27014666-27014667|-/AGAATCATAGGAAATAA|frameshift_variant;ANKRD26|p.N1518Ifs*14|1|0.04|ENSG00000107890|chr10:27014665-27014666|-/A|frameshift_variant;ANKRD26|p.Y1555Ifs*2|1|0.28|ENSG00000107890|chr10:27014555-27014556|-/T|frameshift_variant;ANKRD26|p.N1659Kfs*4|1|0.3|ENSG00000107890|chr10:27006939-27006940|-/T|frameshift_variant;ENSG00000107890|ENST00000376087|ANKRD26;nc|ENSG00000107890|Q9UPS8-2|ANKRD26 ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2547607421875 2 590.234778 1178.455 NaN NaN NaN NaN NaN NaN NaN 86.091 1 82.141 81.641 82.641 -3.9503 0 0 0 2.8426 1 16384 16384 0.26539 0.093389 1 9593 160 6144 6148 9705 9705 -0.1270858601828877 EDCELPHSSY 10 Unmodified _EDCELPHSSY_ 0 0 0 ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant;ANKRD26|p.K1452Rfs*7|1|0.29|ENSG00000107890|chr10:27017653-27017653|T/-|frameshift_variant;ANKRD26|p.N1518Lfs*11|1|0.04|ENSG00000107890|chr10:27014666-27014667|-/AGAATCATAGGAAATAA|frameshift_variant;ANKRD26|p.N1518Ifs*14|1|0.04|ENSG00000107890|chr10:27014665-27014666|-/A|frameshift_variant;ANKRD26|p.Y1555Ifs*2|1|0.28|ENSG00000107890|chr10:27014555-27014556|-/T|frameshift_variant;ANKRD26|p.N1659Kfs*4|1|0.3|ENSG00000107890|chr10:27006939-27006940|-/T|frameshift_variant;ENSG00000107890|ENST00000376087|ANKRD26;nc|ENSG00000107890|Q9UPS8-2|ANKRD26 ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2503051757812 2 590.234778 1178.455 NaN NaN NaN NaN NaN NaN NaN 81.948 1 78.26 77.76 78.76 -3.6879 0 0 0 0.22588 1 15619 15619 10.074 6.4774 1 9594 160 6144 6148 9706 9706 -0.1270858601828877 EDCELPHSSY 10 Unmodified _EDCELPHSSY_ 0 0 0 ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant;ANKRD26|p.K1452Rfs*7|1|0.29|ENSG00000107890|chr10:27017653-27017653|T/-|frameshift_variant;ANKRD26|p.N1518Lfs*11|1|0.04|ENSG00000107890|chr10:27014666-27014667|-/AGAATCATAGGAAATAA|frameshift_variant;ANKRD26|p.N1518Ifs*14|1|0.04|ENSG00000107890|chr10:27014665-27014666|-/A|frameshift_variant;ANKRD26|p.Y1555Ifs*2|1|0.28|ENSG00000107890|chr10:27014555-27014556|-/T|frameshift_variant;ANKRD26|p.N1659Kfs*4|1|0.3|ENSG00000107890|chr10:27006939-27006940|-/T|frameshift_variant;ENSG00000107890|ENST00000376087|ANKRD26;nc|ENSG00000107890|Q9UPS8-2|ANKRD26 ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2644653320312 2 590.234778 1178.455 NaN NaN NaN NaN NaN NaN NaN 90.906 1 87.128 86.628 87.628 -3.7779 0 0 0 2.8426 1 17399 17399 0.26539 0.25212 1 9595 160 6144 6148 9707 9707 -0.1270858601828877 EDCERHVWHRN 11 Unmodified _EDCERHVWHRN_ 0 0 0 REV__CUL1|p.R146H|1|0.34|ENSG00000055130|chr7:148757104-148757104|G/A|missense_variant REV__CUL1|p.R146H|1|0.34|ENSG00000055130|chr7:148757104-148757104|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 494.31121826171875 3 494.221469 1479.64258 NaN NaN NaN NaN NaN NaN NaN 161.94 1 156.79 156.29 157.29 -5.1438 0 0 0 0.22632 1 31452 31452 0.50596 0 1 + 9596 13615 6145 6149 9708 9708 -0.07805709970375574 EDCGHCVCD 9 Unmodified _EDCGHCVCD_ 0 0 0 REV__ENST00000444380.5_1_2:85828554-85829758:-|nuORF REV__ENST00000444380.5_1_2:85828554-85829758:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25335693359375 2 490.64897 979.283387 NaN NaN NaN NaN NaN NaN NaN 112.83 1 112.83 112.33 113.33 0 0 0 0 0.23508 1 22190 22190 2.0598 1.2661 1 + 9597 20438 6146 6150 9709 9709 -0.20708357581986547 EDCGHCVCD 9 Unmodified _EDCGHCVCD_ 0 0 0 REV__ENST00000444380.5_1_2:85828554-85829758:-|nuORF REV__ENST00000444380.5_1_2:85828554-85829758:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2596130371094 2 490.64897 979.283387 0.21643 0.00010619 -1.8006 -0.00088346 -1.5842 -0.00077727 490.6478224032791 126.25 0.17706 121.65 121.57 121.75 -4.5984 6 4 2 0 0 0 0.88278 1 24890 24890 2.0598 1.2661 1 563560 + 9598 20438 6146 6150 9710 9710 -0.20708357581986547 EDCISVDEEG 10 Unmodified _EDCISVDEEG_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD;FOCAD|p.D482Vfs*9|1|0.04|ENSG00000188352|chr9:20789597-20789598|-/TC|frameshift_variant;FOCAD|p.S483Ffs*25|1|0.04|ENSG00000188352|chr9:20789598-20789599|-/C|frameshift_variant;FOCAD|p.F778Lfs*5|1|0.29|ENSG00000188352|chr9:20881882-20881882|T/-|frameshift_variant ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.776611328125 2 548.210969 1094.40738 0.75876 0.00041596 1.1855 0.00064992 1.9443 0.0010659 548.2115132128617 79.752 0.63545 79.752 79.509 80.145 0 24 17 2 0 0 0 0.85223 1 15552 15552 13.042 0 1 2638100 9599 7167 6147 6151 9711 9711 -0.13604285009159867 EDCKKRYEEEI 11 Unmodified _EDCKKRYEEEI_ 0 0 0 CON__Q6NXH9 CON__Q6NXH9 CON__Q6NXH9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2549743652344 3 481.225775 1440.65549 -0.46392 -0.00022325 0.36001 0.00017325 -0.1039 -5.0001E-05 481.2260406357706 108.62 0.73082 104.3 103.97 104.7 -4.32 50 20 4 0 0 0 0.80907 1 21345 21345 2.4348 0 1 4399900 + 9600 701 6148 6152 9712 9712 -0.04720736421472793 EDCKKRYEEEI 11 Unmodified _EDCKKRYEEEI_ 0 0 0 CON__Q6NXH9 CON__Q6NXH9 CON__Q6NXH9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2448425292969 3 481.225775 1440.65549 -0.1036 -4.9854E-05 0.2896 0.00013936 0.186 8.951E-05 481.2259315640547 108.74 0.65551 104.29 103.95 104.6 -4.4518 49 18 3 0 0 0 0.79428 1 20803 20803 4.4062 1.5629 1 4733200 + 9601 701 6148 6152 9713 9713 -0.04720736421472793 EDCLVMPD 8 Unmodified _EDCLVMPD_ 0 0 0 PDE6A|p.T174Dfs*24|1|0.3|ENSG00000132915|chr5:149934674-149934675|-/T|frameshift_variant;PDE6A|p.R582Afs*19|1|0.45|ENSG00000132915|chr5:149886360-149886361|-/T|frameshift_variant;PDE6A|p.A811Gfs*10|1|0.37|ENSG00000132915|chr5:149863193-149863193|G/-|frameshift_variant;ENSG00000132915|ENST00000255266|PDE6A PDE6A|p.T174Dfs*24|1|0.3|ENSG00000132915|chr5:149934674-149934675|-/T|frameshift_variant PDE6A|p.T174Dfs*24|1|0.3|ENSG00000132915|chr5:149934674-149934675|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.52227783203125 2 461.188254 920.361955 NaN NaN NaN NaN NaN NaN NaN 103.73 1 103.73 103.23 104.23 0 0 0 0 0.21486 1 20384 20384 7.2892 2.5332 1 9602 3771 6149 6153 9714 9714 -0.1014118200523626 EDCNCESNCY 10 Unmodified _EDCNCESNCY_ 0 0 0 REV__nc|ENSG00000205754|G3V0H7|SLCO1B7 REV__nc|ENSG00000205754|G3V0H7|SLCO1B7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2612915039062 2 590.173006 1178.33146 NaN NaN NaN NaN NaN NaN NaN 148.26 1 143.11 142.61 143.61 -5.1557 0 0 0 2.8426 1 28703 28703 0.043787 0.042406 1 + 9603 15258 6150 6154 9715 9715 -0.250573284525899 EDCNCESNCY 10 Unmodified _EDCNCESNCY_ 0 0 0 REV__nc|ENSG00000205754|G3V0H7|SLCO1B7 REV__nc|ENSG00000205754|G3V0H7|SLCO1B7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2666625976562 2 590.173006 1178.33146 NaN NaN NaN NaN NaN NaN NaN 21.879 1 20.158 19.658 20.658 -1.7211 0 0 0 0.22588 1 3445 3445 1.8442 1.2427 1 + 9604 15258 6150 6154 9716 9716 -0.250573284525899 EDCNCESNCY 10 Unmodified _EDCNCESNCY_ 0 0 0 REV__nc|ENSG00000205754|G3V0H7|SLCO1B7 REV__nc|ENSG00000205754|G3V0H7|SLCO1B7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2596435546875 2 590.173006 1178.33146 NaN NaN NaN NaN NaN NaN NaN 146.32 1 141.32 140.82 141.82 -5 0 0 0 2.8426 1 28312 28312 0.043787 0 1 + 9605 15258 6150 6154 9717 9717 -0.250573284525899 EDCRGLSSPC 10 Unmodified _EDCRGLSSPC_ 0 0 0 REV__ENST00000361361.6_1_1:155224850-155225021:-|nuORF REV__ENST00000361361.6_1_1:155224850-155225021:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2700805664062 2 533.718241 1065.42193 NaN NaN NaN NaN NaN NaN NaN 38.47 1 36.028 35.528 36.528 -2.4419 0 0 0 0.20365 1 6847 6847 27.629 8.1898 1 + 9606 20881 6151 6155 9718 9718 -0.10816491341984147 EDCVEVQP 8 Unmodified _EDCVEVQP_ 0 0 0 nc|ENSG00000161944|P07307-3|ASGR2;nc|ENSG00000161944|P07307-2|ASGR2;ENSG00000161944|ENST00000691900|ASGR2;nc|ENSG00000161944|P07307|ASGR2 nc|ENSG00000161944|P07307-3|ASGR2 nc|ENSG00000161944|P07307-3|ASGR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2475891113281 2 459.6973 917.380048 0.72797 0.00033465 0.0012972 5.9634E-07 0.72927 0.00033524 459.6973581049528 104.51 0.60046 100.45 100.13 100.73 -4.0543 25 16 2 0 0 0 0.97173 1 20097 20097 18.135 1.1927 1 1487700 9607 5308 6152 6156 9719 9719 -0.08194723758879263 EDCVPSPIP 9 Unmodified _EDCVPSPIP_ 0 0 0 ENST00000225873.8_2_17:33905316-33905562:-|nuORF ENST00000225873.8_2_17:33905316-33905562:-|nuORF ENST00000225873.8_2_17:33905316-33905562:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7431335449219 2 478.723318 955.432083 -0.016123 -7.7184E-06 0.9467 0.00045321 0.93058 0.00044549 478.7237034430472 84.068 2.6812 80.46 79.266 81.948 -3.6079 138 76 2 0 0 0 0.54354 1 16602 16602 16.942 0 1 3096100 9608 8145 6153 6157 9720 9720 -0.04741560345121343 EDCVPSPIP 9 Unmodified _EDCVPSPIP_ 0 0 0 ENST00000225873.8_2_17:33905316-33905562:-|nuORF ENST00000225873.8_2_17:33905316-33905562:-|nuORF ENST00000225873.8_2_17:33905316-33905562:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72344970703125 2 478.723318 955.432083 0.16304 7.8049E-05 0.71606 0.00034279 0.87909 0.00042084 478.72360444283004 84.341 2.4156 80.432 79.43 81.846 -3.9093 116 68 2 0 0 0 0.54354 1 16146 16146 16.942 1.0951 1 2218600 9609 8145 6153 6157 9721 9721 -0.04741560345121343 EDCYSDERY 9 Unmodified _EDCYSDERY_ 0 0 0 CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.26123046875 2 590.216585 1178.41862 0.4308 0.00025427 -0.66829 -0.00039444 -0.23749 -0.00014017 590.7172761934246 157.74 0.25388 152.47 152.36 152.62 -5.2712 9 6 2 0 0 0 0.79297 1 30622 30622 2.0598 0 1 1209600 9610 495 6154 6158 9722 9722 -0.16345462915023745 EDCYSDERY 9 Unmodified _EDCYSDERY_ 0 0 0 CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2688598632812 2 590.216585 1178.41862 0.32626 0.00019256 1.2883 0.0007604 1.6146 0.00095297 590.2171389580266 66.887 0.20598 63.56 63.442 63.648 -3.3268 6 5 2 0 0 0 0.87888 1 12586 12586 2.0598 0 1 1166200 9611 495 6154 6158 9723 9723 -0.16345462915023745 EDCYSDERY 9 Unmodified _EDCYSDERY_ 0 0 0 CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 590.216585 1178.41862 0.43529 0.00025692 0.98453 0.00058108 1.4198 0.000838 590.718085232607 66.83 0.31013 63.721 63.481 63.791 -3.1086 0.080735 -0.00019241 NaN 0.52476 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 943280 9612 495 6154 6158 -0.16345462915023745 EDDCDSFLC 9 Unmodified _EDDCDSFLC_ 0 0 0 LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.I3028Nfs*2|1|0.39|ENSG00000168702|chr2:140492645-140492646|-/T|frameshift_variant;LRP1B|p.N3100Kfs*6|1|0.21|ENSG00000168702|chr2:140485468-140485469|-/T|frameshift_variant;LRP1B|p.Y3120*|1|0.16|ENSG00000168702|chr2:140485402-140485408|AGTAGGG/-|frameshift_variant;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant;LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant;LRP1B|p.T2640Pfs*5|1|0.12|ENSG00000168702|chr2:140525952-140525952|T/-|frameshift_variant;LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant;LRP1B|p.S1126L|1|0.31|ENSG00000168702|chr2:140908020-140908020|G/A|missense_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6763916015625 2 523.675708 1045.33686 NaN NaN NaN NaN NaN NaN NaN 13.13 1 12.01 11.51 12.51 -1.1206 0 0 0 0.23508 1 1631 1631 0.52476 0.52476 1 9613 5927 6155 6159 9724 9724 -0.18399281598453854 EDDDCEFY 8 Unmodified _EDDDCEFY_ 0 0 0 REV__tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1 REV__tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 518.1543579101562 2 518.16603 1034.31751 NaN NaN NaN NaN NaN NaN NaN 144.53 1 139.86 139.36 140.36 -4.6694 0 0 0 0.23749 1 28623 28623 0.12286 0 1 + 9614 25180 6156 6160 9725 9725 -0.1982791461771285 EDDDEDDQL 9 Unmodified _EDDDEDDQL_ 0 0 0 REV__ENSG00000109501|ENST00000226760|WFS1 REV__ENSG00000109501|ENST00000226760|WFS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7801513671875 2 547.19383 1092.37311 0.071232 3.8978E-05 -0.32949 -0.00018029 -0.25825 -0.00014132 547.1941323776558 133.8 0.1768 128.93 128.82 128.99 -4.8726 6 4 2 0 0 0 0.87888 1 25697 25697 2.0598 0 1 631810 + 9615 15164 6157 6161 9726 9726 -0.16938409896397388 EDDDFHSD 8 Unmodified _EDDDFHSD_ 0 0 0 REV__MMP2|p.C349Vfs*72|1|0.45|ENSG00000087245|chr16:55489684-55489684|C/-|frameshift_variant REV__MMP2|p.C349Vfs*72|1|0.45|ENSG00000087245|chr16:55489684-55489684|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26385498046875 2 490.167419 978.320284 NaN NaN NaN NaN NaN NaN NaN 150.76 1 146.03 145.53 146.53 -4.7323 0 0 0 0.2396 1 29946 29946 0 0 1 + 9616 14496 6158 6162 9727 9727 -0.16974323168551564 EDDDSYPKP 9 Unmodified _EDDDSYPKP_ 0 0 0 REV__ENSG00000218305|ENST00000650262|CDC14C REV__ENSG00000218305|ENST00000650262|CDC14C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2692260742188 2 533.222194 1064.42983 NaN NaN NaN NaN NaN NaN NaN 142.79 1 142.79 142.29 143.29 0 0 0 0 0.23508 1 28475 28475 11.64 2.2929 1 + 9617 19703 6159 6163 9728 9728 -0.09980317549229767 EDDEEPIVE 9 Unmodified _EDDEEPIVE_ 0 0 0 nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.T1208Kfs*3|1|0.87|ENSG00000101972|chrX:124095400-124095400|C/-|frameshift_variant;ENSG00000101972|ENST00000371145|STAG2;ENST00000475602.1_1_X:123227886-123229311:+|nuORF nc|ENSG00000101972|Q8N3U4|STAG2 nc|ENSG00000101972|Q8N3U4|STAG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 358.4840393066406 3 358.820631 1073.44006 0.59743 0.00021437 -0.72403 -0.0002598 -0.1266 -4.5425E-05 358.8202921565366 120 0.63224 115.36 115.1 115.73 -4.645 29 17 2 0 0 0 0.54058 1 23065 23065 0.40827 0 1 1915400 9618 2101 6160 6164 9729 9729 -0.09371754614653582 EDDFDDGDD 9 Unmodified _EDDFDDGDD_ 0 0 0 REV__ENST00000427761.1_1_13:68406302-68406587:-|nuORF REV__ENST00000427761.1_1_13:68406302-68406587:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2791137695312 2 521.659623 1041.30469 0.51032 0.00026621 1.6343 0.00085254 2.1446 0.0011188 521.6605820436183 162.06 0.16821 156.87 156.72 156.89 -5.1878 5 4 2 0 0 0 0.74257 1 31458 31458 4.3292 2.2695 1 1276000 + 9619 21584 6161 6165 9730 9730 -0.21430654476262134 EDDGRIIY 8 Unmodified _EDDGRIIY_ 0 0 0 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2637023925781 2 490.737814 979.461075 -0.13387 -6.5695E-05 -0.79344 -0.00038937 -0.92731 -0.00045507 490.73923657668615 65.19 0.10693 65.19 65.139 65.246 0 4 2 2 0 0 0 0.70613 1 12551 12551 13.508 3.3245 1 1000400 + 9620 16262 6162 6166 9731 9731 -0.029476997244614722 EDDGRIIY 8 Unmodified _EDDGRIIY_ 0 0 0 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 490.737814 979.461075 -0.13387 -6.5695E-05 -0.79344 -0.00038937 -0.92731 -0.00045507 490.73923657668615 65.19 0.10693 65.19 65.139 65.246 0 0 0 NaN 13.508 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1000400 + 9621 16262 6162 6166 -0.029476997244614722 EDDIMYME 8 Unmodified _EDDIMYME_ 0 0 0 REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1 REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6915893554688 2 523.196276 1044.378 0.33423 0.00017487 2.7633 0.0014457 3.0975 0.0016206 523.6985958371779 142.36 0.5011 137.46 137.27 137.77 -4.8982 18 13 2 0 0 0 8448 1 27508 27508 0.12286 0.049601 1 3385100 + 9622 25265 6163 6167 9732 9732 -0.14241520558994125 EDDIYLLY 8 Unmodified _EDDIYLLY_ 0 0 0 RBM12B|p.E570Gfs*14|1|0.25|ENSG00000183808|chr8:93734704-93734705|-/G|frameshift_variant;ENSG00000183808|ENST00000520560|RBM12B RBM12B|p.E570Gfs*14|1|0.25|ENSG00000183808|chr8:93734704-93734705|-/G|frameshift_variant RBM12B|p.E570Gfs*14|1|0.25|ENSG00000183808|chr8:93734704-93734705|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2709350585938 2 522.250223 1042.48589 NaN NaN NaN NaN NaN NaN NaN 66.856 1 63.359 62.859 63.859 -3.4965 0 0 0 0.21486 1 12537 12537 10.183 0.83596 1 9623 6872 6164 6168 9733 9733 -0.03365064641729987 EDDKPTLY 8 Unmodified _EDDKPTLY_ 0 0 0 REV__ENST00000570395.1_1_16:53844054-53848662:+|nuORF REV__ENST00000570395.1_1_16:53844054-53848662:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2762756347656 2 490.732197 979.449842 0.28001 0.00013741 1.1273 0.00055319 1.4073 0.0006906 490.7326941869865 37.996 0.81156 37.996 37.647 38.459 0 55 22 3 0 0 0 0.72565 1 7110 7110 34.102 12.356 1 33850000 + 9624 16593 6165 6169 9734 9734 -0.04070521818607631 EDDKPTLY 8 Unmodified _EDDKPTLY_ 0 0 0 REV__ENST00000570395.1_1_16:53844054-53848662:+|nuORF REV__ENST00000570395.1_1_16:53844054-53848662:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.732197 979.449842 0.069211 3.3964E-05 1.6092 0.00078968 1.6784 0.00082365 490.73288361092335 40.408 0.85035 37.868 37.498 38.348 -2.5398 -0.010316 6.4635E-05 NaN 34.102 53 23 3 NaN NaN NaN NaN 0 NaN NaN 0 35066000 + 9625 16593 6165 6169 -0.04070521818607631 EDDLQRYRDEE 11 Unmodified _EDDLQRYRDEE_ 0 0 0 REV__nc|ENSG00000104218|Q1MSJ5-1|CSPP1 REV__nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2646484375 3 489.883065 1466.62737 0.15664 7.6737E-05 -0.082371 -4.0352E-05 0.074272 3.6385E-05 489.8832701985054 52.939 0.45401 49.852 49.551 50.005 -3.0876 13 12 2 0 0 0 0.66087 1 9747 9747 1.4551 0 1 1091300 + 9626 14910 6166 6170 9735 9735 -0.08728343077223144 EDDLTMKLT 9 Unmodified _EDDLTMKLT_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A;POLR3A|p.K348Nfs*33|1|0.16|ENSG00000148606|chr10:78021864-78021864|T/-|frameshift_variant ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2784423828125 2 533.260265 1064.50598 NaN NaN NaN NaN NaN NaN NaN 147.67 1 142.61 142.11 143.11 -5.0595 0 0 0 0.22962 1 28593 28593 14.838 3.198 1 9627 4752 6167 6171 9736 9736 -0.023696369734580003 EDDMTDSLRDY 11 Unmodified _EDDMTDSLRDY_ 0 0 0 nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75592041015625 3 453.850485 1358.52962 -0.035106 -1.5933E-05 -2.0846 -0.00094609 -2.1197 -0.00096202 454.1837830266739 69.081 0.56282 69.081 68.858 69.421 0 25 15 2 0 0 0 0.96165 1 13403 13403 1.1098 0.48293 1 1465000 9628 5834 6168 6172 9737 9737 -0.13529867997590372 EDDMVQTLD 9 Unmodified _EDDMVQTLD_ 0 0 0 REV__MGST1|p.V12E|1|0.2|ENSG00000008394|chr12:16354287-16354287|T/A|missense_variant REV__MGST1|p.V12E|1|0.2|ENSG00000008394|chr12:16354287-16354287|T/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2718505859375 2 533.223879 1064.43321 0.22554 0.00012026 0.68783 0.00036677 0.91337 0.00048703 533.2259566174953 108.96 0.38152 104.51 104.26 104.64 -4.4518 20 10 3 0 0 0 0.81703 1 20897 20897 6.2058 0 1 2525400 + 9629 13901 6169 6173 9738 9738 -0.09643390766859739 EDDMYEGF 8 Unmodified _EDDMYEGF_ 0 0 0 REV__PABPC3|p.D201Y|1|0.13|ENSG00000151846|chr13:25096799-25096799|G/T|missense_variant REV__PABPC3|p.D201Y|1|0.13|ENSG00000151846|chr13:25096799-25096799|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 502.7036437988281 2 503.17894 1004.34333 0.0084364 4.245E-06 -1.5058 -0.00075768 -1.4974 -0.00075344 503.1779659474538 76.872 0.63945 73.234 73.024 73.664 -3.6374 27 17 2 0 0 0 0.88214 1 14650 14650 0.62683 0.3198 1 1799800 + 9630 24424 6170 6174 9739 9739 -0.1586702037543546 EDDMYEGF 8 Unmodified _EDDMYEGF_ 0 0 0 REV__PABPC3|p.D201Y|1|0.13|ENSG00000151846|chr13:25096799-25096799|G/T|missense_variant REV__PABPC3|p.D201Y|1|0.13|ENSG00000151846|chr13:25096799-25096799|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 503.17894 1004.34333 0.20607 0.00010369 -0.6586 -0.00033139 -0.45253 -0.0002277 503.1781923315566 73.173 0.84696 73.173 72.85 73.697 0 -0.030984 0.00038309 NaN 0.62683 71 23 4 NaN NaN NaN NaN 0 NaN NaN 0 12422000 + 9631 24424 6170 6174 -0.1586702037543546 EDDNPPCPR 9 Unmodified _EDDNPPCPR_ 0 0 0 ENSG00000266338|ENST00000581897|NBPF15 ENSG00000266338|ENST00000581897|NBPF15 ENSG00000266338|ENST00000581897|NBPF15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26220703125 2 521.716556 1041.41856 0.044898 2.3424E-05 3.8213 0.0019936 3.8662 0.002017 521.7199556526618 31.596 0.35608 29.365 29.301 29.657 -2.2305 11 9 2 0 0 0 0.6215 1 5776 5776 2.6312 2.558 1 487560 9632 7983 6171 6175 9740 9740 -0.10049418124344811 EDDRISRPHPS 11 Unmodified _EDDRISRPHPS_ 0 0 0 nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4 nc|ENSG00000161813|Q71RC2-2|LARP4 nc|ENSG00000161813|Q71RC2-2|LARP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2162170410156 3 436.881219 1307.62183 0.26413 0.00011539 -1.1356 -0.00049613 -0.87148 -0.00038073 437.2162070348492 101.84 1.5946 97.821 96.893 98.488 -4.0212 55 45 2 0 0 0 0.79196 1 19660 19660 4.7159 0 1 1033100 9633 5302 6172 6176 9741 9741 -0.019679770783795902 EDDSHKII 8 Unmodified _EDDSHKII_ 0 0 0 REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7372741699219 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 121.58 1 121.58 121.08 122.08 0 0 0 0 0.2074 1 23966 23966 19.439 2.4967 1 + 9634 16379 6173 6177 9742 9742 -0.01843699724452108 EDDVFQPED 9 Unmodified _EDDVFQPED_ 0 0 0 nc|ENSG00000104081|Q96LC9-3|BMF;nc|ENSG00000104081|Q96LC9-2|BMF;ENSG00000104081|ENST00000354670|BMF nc|ENSG00000104081|Q96LC9-3|BMF nc|ENSG00000104081|Q96LC9-3|BMF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7816162109375 2 547.219651 1092.42475 -0.16805 -9.1961E-05 3.1772 0.0017386 3.0092 0.0016467 547.724089070795 110.46 0.17712 106.08 106.03 106.21 -4.3776 5 4 2 0 0 0 0.72864 1 21777 21777 23.148 3.7094 1 994240 9635 2217 6174 6178 9743 9743 -0.11776621411831911 EDDVYCSCL 9 Unmodified _EDDVYCSCL_ 0 0 0 NKPD1|p.L170Cfs*14|1|0.31|ENSG00000179846|chr19:45153264-45153264|C/-|frameshift_variant;ENSG00000179846|ENST00000686631|NKPD1 NKPD1|p.L170Cfs*14|1|0.31|ENSG00000179846|chr19:45153264-45153264|C/-|frameshift_variant NKPD1|p.L170Cfs*14|1|0.31|ENSG00000179846|chr19:45153264-45153264|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6951904296875 2 523.6939 1045.37325 NaN NaN NaN NaN NaN NaN NaN 156.03 1 150.74 150.24 151.24 -5.2854 0 0 0 0.19656 1 30265 30265 0.073264 0 1 9636 6646 6175 6179 9744 9744 -0.14762404701764353 EDDYDFRS 8 Unmodified _EDDYDFRS_ 0 0 0 REV__nc|ENSG00000197446|P24903-2|CYP2F1 REV__nc|ENSG00000197446|P24903-2|CYP2F1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6785888671875 2 523.706711 1045.39887 NaN NaN NaN NaN NaN NaN NaN 82.836 1 78.962 78.462 79.462 -3.8736 0 0 0 0.21486 1 15733 15733 7.2892 0.93513 1 + 9637 19337 6176 6180 9745 9745 -0.12201470863465147 EDDYRVINER 10 Unmodified _EDDYRVINER_ 0 0 0 REV__ENSG00000081138|ENST00000397968|CDH7 REV__ENSG00000081138|ENST00000397968|CDH7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2167053222656 3 436.877474 1307.61059 NaN NaN NaN NaN NaN NaN NaN 95.202 1 91.152 90.652 91.652 -4.0496 0 0 0 0.22588 1 18660 18660 3.3196 0.47636 1 + 9638 14425 6177 6181 9746 9746 -0.030907991725143802 EDEAQRVASA 10 Unmodified _EDEAQRVASA_ 0 0 0 REV__ENST00000460680.5_1_3:52443893-52444115:-|nuORF REV__ENST00000460680.5_1_3:52443893-52444115:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 538.1448364257812 2 538.25436 1074.49417 0.54415 0.00029289 -0.15325 -8.2486E-05 0.3909 0.0002104 538.2543686717227 31.989 1.0808 29.841 29.338 30.419 -2.1483 47 21 4 0 0 0 0.87854 1 5529 5529 9.3831 0 1 5391200 + 9639 21880 6178 6182 9747 9747 -0.040101176724192555 EDEDDEEDH 9 Unmodified _EDEDDEEDH_ 0 0 0 ENSG00000135931|ENST00000611582|ARMC9;nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENST00000486787.1_1_2:232160870-232209803:+|nuORF ENSG00000135931|ENST00000611582|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 566.6356201171875 2 566.681087 1131.34762 NaN NaN NaN NaN NaN NaN NaN 142.77 1 142.77 142.27 143.27 0 0 0 0 0.23508 1 28470 28470 2.0598 0 1 9640 3968 6179 6183 9748 9748 -0.2127988441884554 EDEDDEWDD 9 Unmodified _EDEDDEWDD_ 0 0 0 ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 584.183837890625 2 584.183463 1166.35237 NaN NaN NaN NaN NaN NaN NaN 168.83 1 168.83 168.33 169.33 0 0 0 0 0.19631 1 34614 34614 0.20686 0 1 9641 1109 6180 6184 9749 9749 -0.22415000276055252 EDEDEEDY 8 Unmodified _EDEDEEDY_ 0 0 0 REV__ENSG00000277494|ENST00000622500|GPIHBP1 REV__ENSG00000277494|ENST00000622500|GPIHBP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2645874023438 2 522.169824 1042.32509 NaN NaN NaN NaN NaN NaN NaN 95.131 1 90.94 90.44 91.44 -4.1911 0 0 0 0.21486 1 18154 18154 5.7604 0 1 + 9642 19944 6181 6185 9750 9750 -0.19437483816432177 EDEDEYYSC 9 Unmodified _EDEDEYYSC_ 0 0 0 REV__nc|ENSG00000111912|Q8NI08-5|NCOA7 REV__nc|ENSG00000111912|Q8NI08-5|NCOA7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3312377929688 2 576.687326 1151.3601 NaN NaN NaN NaN NaN NaN NaN 36.075 1 33.822 33.322 34.322 -2.2527 0 0 0 0.23508 1 6375 6375 2.0598 0 1 + 9643 15270 6182 6186 9751 9751 -0.2095256428015091 EDEDVDMDDP 10 Unmodified _EDEDVDMDDP_ 0 0 0 REV__DNAJB5|p.P170Qfs*21|1|0.64|ENSG00000137094|chr9:34996557-34996557|C/-|frameshift_variant REV__DNAJB5|p.P170Qfs*21|1|0.64|ENSG00000137094|chr9:34996557-34996557|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2909240722656 3 393.804653 1178.39213 -0.021072 -8.2981E-06 2.8103 0.0011067 2.7892 0.0010984 393.8061941418244 28.62 0.35265 28.62 28.421 28.774 0 13 9 2 0 0 0 0.91149 1 5060 5060 0.13989 0 1 1198500 + 9644 13720 6183 6187 9752 9752 -0.18993196597011774 EDEEEEDSI 9 Unmodified _EDEEEEDSI_ 0 0 0 ENSG00000168016|ENST00000645898|TRANK1;TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant;nc|ENSG00000168016|O15050|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7838134765625 2 547.704031 1093.39351 NaN NaN NaN NaN NaN NaN NaN 144.49 1 139.42 138.92 139.92 -5.0671 0 0 0 0.23508 1 27877 27877 4.3292 0 1 9645 5869 6184 6188 9753 9753 -0.1494523923659017 EDEEEERRRQE 11 Unmodified _EDEEEERRRQE_ 0 0 0 REV__ENST00000513898.5_1_4:2696860-2717089:+|nuORF REV__ENST00000513898.5_1_4:2696860-2717089:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 502.2762145996094 3 502.225602 1503.65498 NaN NaN NaN NaN NaN NaN NaN 36.869 1 34.521 34.021 35.021 -2.3479 0 0 0 0.22632 1 6525 6525 1.4551 0 1 + 9646 15811 6185 6189 9754 9754 -0.07670439817002261 EDEEEKTY 8 Unmodified _EDEEEKTY_ 0 0 0 REV__nc|ENSG00000168566|Q6IEG0-2|SNRNP48 REV__nc|ENSG00000168566|Q6IEG0-2|SNRNP48 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26171875 2 521.714202 1041.41385 0.20259 0.00010569 0.85088 0.00044392 1.0535 0.00054961 522.216959122803 125.91 0.17508 125.91 125.79 125.96 0 6 4 2 0 0 0 1.0147 1 24824 24824 5.2307 0 1 904460 + 9647 18036 6186 6190 9755 9755 -0.10520023786125421 EDEEENHY 8 Unmodified _EDEEENHY_ 0 0 0 REV__ZNF330|p.D269N|1|0.35|ENSG00000109445|chr4:141233831-141233831|G/A|missense_variant REV__ZNF330|p.D269N|1|0.35|ENSG00000109445|chr4:141233831-141233831|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.281005859375 2 532.6938 1063.37305 0.33809 0.0001801 -1.6349 -0.00087089 -1.2968 -0.00069079 532.6931967214185 42.668 0.35081 40.017 39.811 40.161 -2.651 11 9 2 0 0 0 0.93477 1 7646 7646 7.9102 0 1 827940 + 9648 25574 6187 6191 9756 9756 -0.15610365105749224 EDEEKNNP 8 Unmodified _EDEEKNNP_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1 ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 487.583740234375 2 487.706711 973.398869 NaN NaN NaN NaN NaN NaN NaN 60.178 1 57.244 56.744 57.744 -2.9333 0 0 0 0.21486 1 11576 11576 8.5933 0.68312 1 9649 4113 6188 6192 9757 9757 -0.0888947086347116 EDEENDSI 8 Unmodified _EDEENDSI_ 0 0 0 nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-6|UNC80;nc|ENSG00000144406|Q8N2C7-5|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 475.6825256347656 2 475.682901 949.35125 NaN NaN NaN NaN NaN NaN NaN 154.71 1 154.71 154.21 155.21 0 0 0 0 0.22834 1 31009 31009 0.62683 0 1 9650 4551 6189 6193 9758 9758 -0.12545169854331562 EDEENIYWY 9 Unmodified _EDEENIYWY_ 0 0 0 REV__nc|ENSG00000149970|Q8WXI2-4|CNKSR2 REV__nc|ENSG00000149970|Q8WXI2-4|CNKSR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7764892578125 2 630.756401 1259.49825 NaN NaN NaN NaN NaN NaN NaN 129.85 1 125.08 124.58 125.58 -4.7725 0 0 0 0.23508 1 24983 24983 4.3292 0.73274 1 + 9651 17022 6190 6194 9759 9759 -0.12112072969398469 EDEEPEEEEEE 11 Unmodified _EDEEPEEEEEE_ 0 0 0 ENSG00000177732|ENST00000342665|SOX12 ENSG00000177732|ENST00000342665|SOX12 ENSG00000177732|ENST00000342665|SOX12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23748779296875 3 464.831813 1391.47361 0.76228 0.00035433 0.64421 0.00029945 1.4065 0.00065378 464.83224825718247 28.12 0.62794 26.164 25.874 26.502 -1.9561 56 17 5 0 0 0 0.96216 1 4989 4989 0.45452 0 1 6593700 9652 6536 6191 6195 9760 9760 -0.20646842424048373 EDEEQDNDW 9 Unmodified _EDEEQDNDW_ 0 0 0 nc|ENSG00000139973|Q17RD7-4|SYT16;nc|ENSG00000139973|Q17RD7-2|SYT16;ENSG00000139973|ENST00000683842|SYT16 nc|ENSG00000139973|Q17RD7-4|SYT16 nc|ENSG00000139973|Q17RD7-4|SYT16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.267578125 2 590.207272 1178.39999 NaN NaN NaN NaN NaN NaN NaN 163.47 1 163.47 162.97 163.97 0 0 0 0 0.19626 1 32953 32953 0.0033805 0 1 9653 4273 6192 6196 9761 9761 -0.18207301285224275 EDEESMKL 8 Unmodified _EDEESMKL_ 0 0 0 REV__ENSG00000165912|ENST00000298838|PACSIN3 REV__ENSG00000165912|ENST00000298838|PACSIN3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2657470703125 2 490.71569 979.416827 NaN NaN NaN NaN NaN NaN NaN 77.867 1 77.867 77.367 78.367 0 0 0 0 0.22676 1 15148 15148 0.68139 0 1 + 9654 17807 6193 6197 9762 9762 -0.07370471932961209 EDEFDDPQA 9 Unmodified _EDEFDDPQA_ 0 0 0 ENST00000479155.1_1_17:18137242-18138852:+|nuORF;LLGL1|p.R436Pfs*18|1|0.37|ENSG00000131899|chr17:18235484-18235485|-/G|frameshift_variant;ENSG00000131899|ENST00000316843|LLGL1 ENST00000479155.1_1_17:18137242-18138852:+|nuORF ENST00000479155.1_1_17:18137242-18138852:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2689819335938 2 533.204001 1064.39345 0.2384 0.00012711 -2.8349 -0.0015116 -2.5965 -0.0013844 533.202429955999 51.135 0.21326 51.135 51.022 51.235 0 6 5 2 0 0 0 0.34815 1 9692 9692 1.2148 0 1 1572900 9655 3698 6194 6198 9763 9763 -0.13617194445942005 EDEFFTRT 8 Unmodified _EDEFFTRT_ 0 0 0 REV__ENSG00000171495|ENST00000399564|MROH2B REV__ENSG00000171495|ENST00000399564|MROH2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6846313476562 2 522.735271 1043.45599 0.3551 0.00018562 -0.37185 -0.00019438 -0.016744 -8.7526E-06 522.7350308794367 100.23 0.95381 96.241 95.799 96.753 -3.9895 57 27 3 0 0 0 0.73936 1 19269 19269 8.5933 0.68312 1 5777200 + 9656 18230 6195 6199 9764 9764 -0.06400003587077663 EDEFRYRMY 9 Unmodified _EDEFRYRMY_ 0 0 0 ENST00000496699.1_1_1:117509714-117517097:+|nuORF;ENSG00000134247|ENST00000393203|PTGFRN ENST00000496699.1_1_1:117509714-117517097:+|nuORF ENST00000496699.1_1_1:117509714-117517097:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21875 3 436.860767 1307.56047 -0.43136 -0.00018845 -1.9217 -0.00083953 -2.3531 -0.001028 436.8599380437968 39.137 0.39302 36.588 36.396 36.789 -2.5491 14 10 2 0 0 0 0.78802 1 7266 7266 2.2828 0.69049 1 783130 9657 3834 6196 6200 9765 9765 -0.08100625102019876 EDEGCCCCEP 10 Unmodified _EDEGCCCCEP_ 0 0 0 nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF;ENSG00000197136|ENST00000355703|PCNX3 nc|ENSG00000197136|Q9H6A9-3|PCNX3 nc|ENSG00000197136|Q9H6A9-3|PCNX3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78857421875 2 544.145403 1086.27625 NaN NaN NaN NaN NaN NaN NaN 96.015 1 96.015 95.515 96.515 0 0 0 0 0.22588 1 18809 18809 1.6526 1.2519 1 9658 7333 6197 6201 9766 9766 -0.2634345824474167 EDEIWKQRR 9 Unmodified _EDEIWKQRR_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant;PRRC2C|p.K551Nfs*17|1|0.23|ENSG00000117523|chr1:171532743-171532743|A/-|frameshift_variant nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7786254882812 2 630.328193 1258.64183 NaN NaN NaN NaN NaN NaN NaN 100.97 1 96.811 96.311 97.311 -4.1594 0 0 0 0.23508 1 19850 19850 7.2892 0 1 9659 2991 6198 6202 9767 9767 0.02285818652217131 EDELDGGGVA 10 Unmodified _EDELDGGGVA_ 0 0 0 REV__nc|ENSG00000114646|O95196-3|CSPG5 REV__nc|ENSG00000114646|O95196-3|CSPG5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24102783203125 2 481.209086 960.40362 0.18686 8.9921E-05 1.0137 0.00048779 1.2005 0.00057771 481.2093013388798 97.551 0.30408 93.316 93.124 93.428 -4.2348 13 8 2 0 0 0 0.81109 1 18625 18625 18.146 0 1 651710 + 9660 15380 6199 6203 9768 9768 -0.0781658672069625 EDELGRLTGP 10 Unmodified _EDELGRLTGP_ 0 0 0 REV__ENSG00000283632|ENST00000413988|EXOC3L2 REV__ENSG00000283632|ENST00000413988|EXOC3L2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7763061523438 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 27.501 1 25.579 25.079 26.079 -1.9222 0 0 0 0.22588 1 4603 4603 8.7454 1.4562 1 + 9661 19960 6200 6204 9769 9769 -0.004043566329528403 EDELQLLPE 9 Unmodified _EDELQLLPE_ 0 0 0 REV__CCDC178|p.Y665Mfs*4|2|0.25|ENSG00000166960|chr18:33215635-33215635|A/-|frameshift_variant REV__CCDC178|p.Y665Mfs*4|2|0.25|ENSG00000166960|chr18:33215635-33215635|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7733154296875 2 543.271687 1084.52882 0.50334 0.00027345 2.9051 0.0015782 3.4084 0.0018517 543.2732129223631 29.057 0.20956 27.061 26.971 27.18 -1.9962 7 5 2 0 0 0 0.68435 1 4937 4937 7.2892 0.56607 1 294090 + 9662 13292 6201 6205 9770 9770 -0.01006294584317402 EDENVNIYR 9 Unmodified _EDENVNIYR_ 0 0 0 nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3;ENSG00000123427|ENST00000300209|EEF1AKMT3 nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3 nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3151245117188 2 576.27001 1150.52547 0.24736 0.00014254 -0.65761 -0.00037896 -0.41025 -0.00023642 576.2696046725162 18.751 0.44959 18.751 18.511 18.961 0 24 12 3 0 0 0 0.75112 1 2991 2991 3.9444 0 1 1837200 9663 3268 6202 6206 9771 9771 -0.043775446383278904 EDEQHVRELWQ 11 Unmodified _EDEQHVRELWQ_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000001528 REV__CON__ENSEMBL:ENSBTAP00000001528 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2648010253906 3 490.232028 1467.67426 NaN NaN NaN NaN NaN NaN NaN 81.65 1 78.093 77.593 78.593 -3.557 0 0 0 0.22632 1 15949 15949 0.0059557 0 1 + + 9664 13503 6203 6207 9772 9772 -0.04087438735427895 EDESEQFY 8 Unmodified _EDESEQFY_ 0 0 0 REV__tr|U7SUS8|U7SUS8_FUSNUGH3auxin-responsivepromoterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00992PE=4SV=1 REV__tr|U7SUS8|U7SUS8_FUSNUGH3auxin-responsivepromoterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00992PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7017822265625 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 64.311 1 64.311 63.811 64.811 0 0 0 0 0.21486 1 12379 12379 5.7604 0 1 + 9665 25173 6204 6208 9773 9773 -0.13324292957599937 EDESPAEP 8 Unmodified _EDESPAEP_ 0 0 0 REV__ENST00000610279.1_1_10:69609402-69609453:+|nuORF REV__ENST00000610279.1_1_10:69609402-69609453:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2170104980469 2 437.177255 872.339957 NaN NaN NaN NaN NaN NaN NaN 78.429 1 78.429 77.929 78.929 0 0 0 0 0.21486 1 15264 15264 8.5933 1.304 1 + 9666 23490 6205 6209 9774 9774 -0.10131947157799459 EDESTYHHVQ 10 Unmodified _EDESTYHHVQ_ 0 0 0 REV__ENST00000489623.1_1_6:43022205-43025873:-|nuORF REV__ENST00000489623.1_1_6:43022205-43025873:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7642211914062 2 622.762549 1243.51054 NaN NaN NaN NaN NaN NaN NaN 68.163 1 64.627 64.127 65.127 -3.5362 0 0 0 0.22588 1 12802 12802 10.074 2.1638 1 + 9667 22294 6206 6210 9775 9775 -0.10147036506327822 EDEVVICPY 9 Unmodified _EDEVVICPY_ 0 0 0 nc|ENSG00000168566|Q6IEG0-2|SNRNP48;ENSG00000168566|ENST00000342415|SNRNP48 nc|ENSG00000168566|Q6IEG0-2|SNRNP48 nc|ENSG00000168566|Q6IEG0-2|SNRNP48 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.263916015625 2 533.741708 1065.46886 NaN NaN NaN NaN NaN NaN NaN 60.936 1 57.567 57.067 58.067 -3.3694 0 0 0 0.23508 1 11354 11354 7.9102 0.62092 1 9668 5922 6207 6211 9776 9776 -0.06125308519222017 EDEWNLLY 8 Unmodified _EDEWNLLY_ 0 0 0 ENST00000470353.1_1_10:5967388-5971349:+|nuORF;ENST00000479433.5_1_10:5967388-5970349:+|nuORF;ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 ENST00000470353.1_1_10:5967388-5971349:+|nuORF ENST00000470353.1_1_10:5967388-5971349:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27001953125 2 541.245472 1080.47639 0.50043 0.00027085 -0.16346 -8.847E-05 0.33697 0.00018238 541.2452660547516 98.94 0.76079 98.94 98.506 99.267 0 36 21 2 0 0 0 0.73936 1 19309 19309 8.5933 0 1 6435100 9669 3853 6208 6212 9777 9777 -0.06062832927273121 EDEYAPAIQSG 11 Unmodified _EDEYAPAIQSG_ 0 0 0 ENST00000553115.1_1_12:55516583-55517273:-|nuORF ENST00000553115.1_1_12:55516583-55517273:-|nuORF ENST00000553115.1_1_12:55516583-55517273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2601928710938 2 590.26185 1178.50915 NaN NaN NaN NaN NaN NaN NaN 156.14 1 150.89 150.39 151.39 -5.2526 0 0 0 0.22632 1 30279 30279 0.0059557 0 1 9670 11203 6209 6213 9778 9778 -0.072966705951103 EDEYDVPP 8 Unmodified _EDEYDVPP_ 0 0 0 REV__nc|ENSG00000136754|Q8IZP0-11|ABI1 REV__nc|ENSG00000136754|Q8IZP0-11|ABI1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7662658691406 2 482.20073 962.386907 NaN NaN NaN NaN NaN NaN NaN 63.414 1 60.157 59.657 60.657 -3.2567 0 0 0 0.2074 1 11899 11899 19.439 4.6007 1 + 9671 16346 6210 6214 9779 9779 -0.09579087606653047 EDEYDYDYESL 11 Unmodified _EDEYDYDYESL_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.253662109375 3 480.849027 1439.52525 NaN NaN NaN NaN NaN NaN NaN 127.75 1 127.75 127.25 128.25 0 0 0 0 0.23698 1 25222 25222 1.2148 0.76031 1 9672 4161 6211 6215 9780 9780 -0.17693053939501624 EDEYKAFY 8 Unmodified _EDEYKAFY_ 0 0 0 ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000550479.1_1_12:104332030-104335334:+|nuORF ENST00000548462.5_1_12:104324233-104336580:+|nuORF ENST00000548462.5_1_12:104324233-104336580:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2728881835938 2 532.732197 1063.44984 -0.094565 -5.0378E-05 2.4879 0.0013254 2.3934 0.001275 533.2363998142839 56.577 0.76622 56.577 56.185 56.951 0 30 21 2 0 0 0 0.6199 1 10840 10840 20.871 1.6142 1 1202900 9673 5738 6212 6216 9781 9781 -0.079345218186063 EDEYKAFY 8 Unmodified _EDEYKAFY_ 0 0 0 ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000550479.1_1_12:104332030-104335334:+|nuORF ENST00000548462.5_1_12:104324233-104336580:+|nuORF ENST00000548462.5_1_12:104324233-104336580:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.270263671875 2 532.732197 1063.44984 0.47972 0.00025556 -0.29604 -0.00015771 0.18368 9.7853E-05 532.7313537898959 59.871 0.69798 56.557 56.209 56.907 -3.3139 31 19 2 0 0 0 0.69887 1 11078 11078 14.582 2.0501 1 1455100 9674 5738 6212 6216 9782 9782 -0.079345218186063 EDEYKKKF 8 Unmodified _EDEYKKKF_ 0 0 0 REV__CON__Q3TTY5 REV__CON__Q3TTY5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7877807617188 2 543.776939 1085.53933 0.70597 0.00038389 0.17411 9.4677E-05 0.88008 0.00047856 543.7766967791914 110.9 0.56061 106.67 106.38 106.94 -4.2289 34 15 4 0 0 0 0.73936 1 21288 21288 8.5933 1.304 1 2875300 + + 9675 13546 6213 6217 9783 9783 -2.2671392343909247E-05 EDFAHVISF 9 Unmodified _EDFAHVISF_ 0 0 0 nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B nc|ENSG00000110844|Q6NWY9-2|PRPF40B nc|ENSG00000110844|Q6NWY9-2|PRPF40B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2703247070312 2 532.756007 1063.49746 0.2354 0.00012541 1.0417 0.00055498 1.2771 0.00068039 532.7566650642025 158.86 0.43124 154.07 153.8 154.23 -4.7952 15 11 2 0 0 0 0.060164 1 31588 31588 67.344 31.3 1 2108500 9676 2590 6214 6218 9784 9784 -0.03174822827782009 EDFDQGQATSY 11 Unmodified _EDFDQGQATSY_ 0 0 0 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7555541992188 2 630.754389 1259.49423 NaN NaN NaN NaN NaN NaN NaN 101.31 1 97.016 96.516 97.516 -4.297 0 0 0 0.22862 1 19386 19386 9.3831 2.66 1 9677 4133 6215 6219 9785 9785 -0.12514162463071443 EDFEQDQNA 9 Unmodified _EDFEQDQNA_ 0 0 0 ENSG00000127311|ENST00000247815|HELB;nc|ENSG00000127311|Q8NG08-2|HELB;HELB|p.I742Lfs*2|1|0.06|ENSG00000127311|chr12:66322015-66322016|-/CTATG|frameshift_variant ENSG00000127311|ENST00000247815|HELB ENSG00000127311|ENST00000247815|HELB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7890014648438 2 548.2149 1094.41525 0.74802 0.00041007 0.73214 0.00040137 1.4802 0.00081145 548.2152593096071 78.865 1.2103 78.865 78.299 79.509 0 85 34 3 0 0 0 0.77734 1 15344 15344 19.257 3.1079 1 5311800 9678 3469 6216 6220 9786 9786 -0.12818389697372368 EDFEQDQNA 9 Unmodified _EDFEQDQNA_ 0 0 0 ENSG00000127311|ENST00000247815|HELB;nc|ENSG00000127311|Q8NG08-2|HELB;HELB|p.I742Lfs*2|1|0.06|ENSG00000127311|chr12:66322015-66322016|-/CTATG|frameshift_variant ENSG00000127311|ENST00000247815|HELB ENSG00000127311|ENST00000247815|HELB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7785034179688 2 548.2149 1094.41525 0.17411 9.545E-05 0.86978 0.00047682 1.0439 0.00057227 548.2153004304461 83.006 1.3062 79.398 78.775 80.081 -3.6079 91 36 3 0 0 0 0.71527 1 16277 16277 19.257 3.1079 1 5104900 9679 3469 6216 6220 9787 9787 -0.12818389697372368 EDFEQDQNA 9 Unmodified _EDFEQDQNA_ 0 0 0 ENSG00000127311|ENST00000247815|HELB;nc|ENSG00000127311|Q8NG08-2|HELB;HELB|p.I742Lfs*2|1|0.06|ENSG00000127311|chr12:66322015-66322016|-/CTATG|frameshift_variant ENSG00000127311|ENST00000247815|HELB ENSG00000127311|ENST00000247815|HELB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7901000976562 2 548.2149 1094.41525 0.1443 7.9107E-05 1.0904 0.00059776 1.2347 0.00067687 548.2153871433337 83.454 1.7187 79.581 78.74 80.459 -3.8736 113 48 3 0 0 0 0.77734 1 15815 15815 19.257 7.6167 1 5928600 9680 3469 6216 6220 9788 9788 -0.12818389697372368 EDFEQDQNA 9 Unmodified _EDFEQDQNA_ 0 0 0 ENSG00000127311|ENST00000247815|HELB;nc|ENSG00000127311|Q8NG08-2|HELB;HELB|p.I742Lfs*2|1|0.06|ENSG00000127311|chr12:66322015-66322016|-/CTATG|frameshift_variant ENSG00000127311|ENST00000247815|HELB ENSG00000127311|ENST00000247815|HELB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7723999023438 2 548.2149 1094.41525 -0.016807 -9.2136E-06 1.004 0.00055042 0.98722 0.00054121 548.2153127658903 82.949 1.5231 79.251 78.728 80.252 -3.6985 87 43 3 0 0 0 0.77734 1 15905 15905 19.257 3.1079 1 5333000 9681 3469 6216 6220 9789 9789 -0.12818389697372368 EDFFLEHE 8 Unmodified _EDFFLEHE_ 0 0 0 ENST00000492226.1_1_3:183861886-183862561:+|nuORF;ENST00000465218.2_1_3:183861194-183862728:+|nuORF;ENST00000491144.5_1_3:183857994-183862728:+|nuORF;ENSG00000145191|ENST00000648915|EIF2B5 ENST00000492226.1_1_3:183861886-183862561:+|nuORF ENST00000492226.1_1_3:183861886-183862561:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2865600585938 2 533.229822 1064.44509 0.099445 5.3027E-05 0.37021 0.00019741 0.46966 0.00025043 533.2301642389901 130.2 0.48895 130.2 129.95 130.44 0 18 13 2 0 0 0 0.27274 1 25761 25761 38.151 16.405 1 2305400 9682 4595 6217 6221 9790 9790 -0.08455405961376528 EDFFQYCNN 9 Unmodified _EDFFQYCNN_ 0 0 0 REV__ENST00000540267.5_1_12:10525715-10532097:-|nuORF REV__ENST00000540267.5_1_12:10525715-10532097:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2501220703125 2 590.224214 1178.43387 NaN NaN NaN NaN NaN NaN NaN 147.2 1 142.51 142.01 143.01 -4.6868 0 0 0 0.23508 1 29201 29201 4.3292 0.73274 1 + 9683 19647 6218 6222 9791 9791 -0.14820551327147768 EDFFVMSDY 9 Unmodified _EDFFVMSDY_ 0 0 0 ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF ENST00000462639.1_1_X:23803380-23803605:+|nuORF ENST00000462639.1_1_X:23803380-23803605:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3126831054688 2 576.73134 1151.44813 NaN NaN NaN NaN NaN NaN NaN 109.89 1 105.52 105.02 106.02 -4.3776 0 0 0 0.22251 1 21655 21655 16.942 4.4107 1 9684 3585 6219 6223 9792 9792 -0.12153898898873194 EDFILAVR 8 Unmodified _EDFILAVR_ 0 0 0 ENSG00000214042|ENST00000239347|IFNA7 ENSG00000214042|ENST00000239347|IFNA7 ENSG00000214042|ENST00000239347|IFNA7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7674560546875 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 63.331 1 59.915 59.415 60.415 -3.4158 0 0 0 0.21486 1 11829 11829 11.64 2.2572 1 9685 7719 6220 6224 9793 9793 0.040980714145121055 EDFIVEQY 8 Unmodified _EDFIVEQY_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2613525390625 2 521.740022 1041.46549 -0.064686 -3.3749E-05 0.1966 0.00010258 0.13192 6.8828E-05 521.7402115279954 124.16 0.77525 119.59 119.17 119.94 -4.5757 33 21 2 0 0 0 0.14825 1 24453 24453 53.576 26.692 1 2899600 9686 1532 6221 6225 9794 9794 -0.05358235301559944 EDFIVEQY 8 Unmodified _EDFIVEQY_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2618408203125 2 521.740022 1041.46549 -0.32286 -0.00016845 0.47222 0.00024637 0.14936 7.7926E-05 521.7403166732131 124.31 0.67313 119.58 119.17 119.84 -4.7346 31 18 2 0 0 0 0.14825 3 23883 23881;23883;23890 57.885 33.003 1 2233700 9687 1532 6221 6225 9795;9796;9797 9796 -0.05358235301559944 EDFIVEQY 8 Unmodified _EDFIVEQY_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2568359375 2 521.740022 1041.46549 0.30826 0.00016083 -0.083913 -4.3781E-05 0.22435 0.00011705 521.7398695973985 124.06 0.6749 119.47 119.17 119.84 -4.5926 32 18 2 0 0 0 0.68128 2 23835 23835;23910 39.111 27.362 1 2023000 9688 1532 6221 6225 9798;9799 9798 -0.05358235301559944 EDFKAALY 8 Unmodified _EDFKAALY_ 0 0 0 DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72332763671875 2 478.739825 955.465098 NaN NaN NaN NaN NaN NaN NaN 64.072 1 61.075 60.575 61.575 -2.9975 0 0 0 0.21486 1 12387 12387 10.183 0 1 9689 808 6222 6226 9800 9800 -0.014416102307677647 EDFKEGEPD 9 Unmodified _EDFKEGEPD_ 0 0 0 ENSG00000100583|ENST00000216471|SAMD15;nc|ENSG00000100583|Q9P1V8-2|SAMD15;SAMD15|p.K108Nfs*21|1|0.09|ENSG00000100583|chr14:77377741-77377742|-/T|frameshift_variant ENSG00000100583|ENST00000216471|SAMD15 ENSG00000100583|ENST00000216471|SAMD15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2816772460938 2 533.222194 1064.42983 0.056896 3.0338E-05 -0.24275 -0.00012944 -0.18585 -9.9099E-05 533.2221323875249 42.361 0.73803 39.755 39.577 40.315 -2.606 26 20 2 0 0 0 0.58804 1 7670 7670 13.906 3.8321 1 1652700 9690 1992 6223 6227 9801 9801 -0.0998031754920703 EDFKILWK 8 Unmodified _EDFKILWK_ 0 0 0 THAP2|p.E207Wfs*17|1|0.02|ENSG00000173451|chr12:71677014-71677015|-/TCCTTTGGAAGATTTTAAGA|frameshift_variant THAP2|p.E207Wfs*17|1|0.02|ENSG00000173451|chr12:71677014-71677015|-/TCCTTTGGAAGATTTTAAGA|frameshift_variant THAP2|p.E207Wfs*17|1|0.02|ENSG00000173451|chr12:71677014-71677015|-/TCCTTTGGAAGATTTTAAGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20147705078125 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 110.63 1 106.14 105.64 106.64 -4.4915 0 0 0 0.21486 1 21235 21235 3.2813 0.54611 1 9691 25842 6224 6228 9802 9802 0.05019217482708882 EDFKILWK 8 Unmodified _EDFKILWK_ 0 0 0 THAP2|p.E207Wfs*17|1|0.02|ENSG00000173451|chr12:71677014-71677015|-/TCCTTTGGAAGATTTTAAGA|frameshift_variant THAP2|p.E207Wfs*17|1|0.02|ENSG00000173451|chr12:71677014-71677015|-/TCCTTTGGAAGATTTTAAGA|frameshift_variant THAP2|p.E207Wfs*17|1|0.02|ENSG00000173451|chr12:71677014-71677015|-/TCCTTTGGAAGATTTTAAGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20135498046875 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 128.84 1 124.1 123.6 124.6 -4.7408 0 0 0 0.21486 1 24791 24791 5.7319 1.8555 1 9692 25842 6224 6228 9803 9803 0.05019217482708882 EDFLAKSF 8 Unmodified _EDFLAKSF_ 0 0 0 REV__tr|U7SU59|U7SU59_FUSNUtRNA(Met)cytidineacetateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tmcALPE=3SV=1 REV__tr|U7SU59|U7SU59_FUSNUtRNA(Met)cytidineacetateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tmcALPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7406005859375 2 478.739825 955.465098 NaN NaN NaN NaN NaN NaN NaN 112.44 1 107.91 107.41 108.41 -4.5259 0 0 0 0.21452 1 21582 21582 13.508 0.97634 1 + 9693 25143 6225 6229 9804 9804 -0.014416102307677647 EDFLTILK 8 Unmodified _EDFLTILK_ 0 0 0 ENST00000323981.6_1_11:93470365-93471279:-|nuORF;ENST00000532235.1_1_11:93470365-93472473:-|nuORF ENST00000323981.6_1_11:93470365-93471279:-|nuORF ENST00000323981.6_1_11:93470365-93471279:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25811767578125 2 489.778951 977.543348 0.2092 0.00010246 0.11433 5.5997E-05 0.32353 0.00015846 489.7788570534988 147.89 0.64809 143.18 142.9 143.54 -4.7095 29 18 2 0 0 0 0.19607 1 29386 29386 46.021 4.1813 1 6368100 9694 8726 6226 6230 9805 9805 0.05367822354469354 EDFMYRHLQYY 11 Unmodified _EDFMYRHLQYY_ 0 0 0 ENST00000529712.5_1_11:47690447-47736202:-|nuORF;ENSG00000165923|ENST00000525123|AGBL2 ENST00000529712.5_1_11:47690447-47736202:-|nuORF ENST00000529712.5_1_11:47690447-47736202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2655639648438 3 522.234493 1563.68165 NaN NaN NaN NaN NaN NaN NaN 56.87 1 53.975 53.475 54.475 -2.8944 0 0 0 0.22632 1 10908 10908 0.50596 0 1 9695 5678 6227 6231 9806 9806 -0.07764422459331399 EDFNAFFN 8 Unmodified _EDFNAFFN_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 503.2474670410156 2 502.211432 1002.40831 -0.23876 -0.00011991 -0.13595 -6.8277E-05 -0.37472 -0.00018819 502.21132560162033 53.994 2.4404 51.11 50.872 53.313 -2.8837 191 70 3 0 0 0 8448 1 10378 10378 1.7423 0 1 68940000 9696 3322 6228 6232 9807 9807 -0.09279657787283213 EDFNIKVI 8 Unmodified _EDFNIKVI_ 0 0 0 CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant;nc|ENSG00000120334|Q8N0S6-3|CENPL;ENST00000496683.5_1_1:173772617-173780437:-|nuORF;ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 489.9476013183594 2 489.26875 976.522947 0.19115 9.3524E-05 -0.0038217 -1.8698E-06 0.18733 9.1654E-05 489.2686059426014 142.79 0.55914 142.79 142.48 143.04 0 21 15 2 0 0 0 8448 1 28430 28430 20.411 0 1 4274500 9697 485 6229 6233 9808 9808 0.03374651694673503 EDFNIKVI 8 Unmodified _EDFNIKVI_ 0 0 0 CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant;nc|ENSG00000120334|Q8N0S6-3|CENPL;ENST00000496683.5_1_1:173772617-173780437:-|nuORF;ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2722473144531 2 489.26875 976.522947 0.23857 0.00011673 -0.1757 -8.5964E-05 0.062873 3.0762E-05 489.268631369196 147.87 0.78026 142.72 142.3 143.08 -5.1557 38 21 3 0 0 0 0.49114 1 28625 28625 28.487 0 1 3894500 9698 485 6229 6233 9809 9809 0.03374651694673503 EDFNIKVI 8 Unmodified _EDFNIKVI_ 0 0 0 CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant;nc|ENSG00000120334|Q8N0S6-3|CENPL;ENST00000496683.5_1_1:173772617-173780437:-|nuORF;ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.26875 976.522947 0.19115 9.3524E-05 -0.0038217 -1.8698E-06 0.18733 9.1654E-05 489.2686059426014 142.79 0.55914 142.79 142.48 143.04 0 0.068739 0.00011848 NaN 28.487 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4274500 9699 485 6229 6233 0.03374651694673503 EDFNIKVI 8 Unmodified _EDFNIKVI_ 0 0 0 CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant;nc|ENSG00000120334|Q8N0S6-3|CENPL;ENST00000496683.5_1_1:173772617-173780437:-|nuORF;ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.26875 976.522947 0.21154 0.0001035 -0.11717 -5.7329E-05 0.094368 4.6171E-05 489.2685982233315 147.44 0.58679 142.73 142.38 142.96 -4.7095 0.0022833 7.5601E-06 NaN 28.487 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3752200 9700 485 6229 6233 0.03374651694673503 EDFNIKVI 8 Unmodified _EDFNIKVI_ 0 0 0 CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant;nc|ENSG00000120334|Q8N0S6-3|CENPL;ENST00000496683.5_1_1:173772617-173780437:-|nuORF;ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant CENPL|p.G112R|1|0.03|ENSG00000120334|chr1:173807353-173807353|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.26875 976.522947 0.080196 3.9238E-05 -0.11998 -5.8702E-05 -0.039782 -1.9464E-05 489.26868786675396 147.73 0.55844 142.67 142.42 142.98 -5.0595 -0.060095 4.8154E-06 NaN 28.487 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3126500 9701 485 6229 6233 0.03374651694673503 EDFNQNVL 8 Unmodified _EDFNQNVL_ 0 0 0 nc|ENSG00000198911|Q12772-2|SREBF2;ENSG00000198911|ENST00000361204|SREBF2 nc|ENSG00000198911|Q12772-2|SREBF2 nc|ENSG00000198911|Q12772-2|SREBF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25799560546875 2 489.729989 977.445425 0.20762 0.00010168 3.7593 0.001841 3.9669 0.0019427 489.7321122647923 147.58 0.40344 142.87 142.66 143.06 -4.7095 18 11 2 0 0 0 0.97173 1 29269 29269 18.135 3.5533 1 1536600 9702 7522 6230 6234 9810 9810 -0.04419986241521201 EDFQEVSDL 9 Unmodified _EDFQEVSDL_ 0 0 0 ENSG00000118017|ENST00000236709|A4GNT ENSG00000118017|ENST00000236709|A4GNT ENSG00000118017|ENST00000236709|A4GNT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.265625 2 541.237844 1080.46113 0.315 0.00017049 0.45969 0.0002488 0.77468 0.00041929 541.2383249442873 150.29 0.14133 145.56 145.46 145.61 -4.7323 5 3 2 0 0 0 0.53499 1 29842 29842 0.40827 0 1 3565400 9703 3012 6231 6235 9811 9811 -0.07587744515149097 EDFRKAVMV 9 Unmodified _EDFRKAVMV_ 0 0 0 ENSG00000136449|ENST00000323776|MYCBPAP;nc|ENSG00000136449|Q8TBZ2|MYCBPAP ENSG00000136449|ENST00000323776|MYCBPAP ENSG00000136449|ENST00000323776|MYCBPAP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7879028320312 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 51.934 1 48.883 48.383 49.383 -3.0517 0 0 0 0.23508 1 9575 9575 11.64 1.4569 1 9704 4011 6232 6236 9812 9812 0.015977855998698942 EDFTIKLI 8 Unmodified _EDFTIKLI_ 0 0 0 ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK;PASK|p.A1137T|1|0.34|ENSG00000115687|chr2:241112364-241112364|C/T|missense_variant;ENST00000475666.1_1_2:242048116-242051833:-|nuORF ENSG00000115687|ENST00000234040|PASK ENSG00000115687|ENST00000234040|PASK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2718811035156 2 489.778951 977.543348 0.22683 0.0001111 0.26965 0.00013207 0.49648 0.00024316 489.7789373013585 148.41 0.60187 143.26 142.97 143.58 -5.1558 32 16 3 0 0 0 0.17453 1 28750 28750 48.346 0 1 3541100 9705 2878 6233 6237 9813 9813 0.053678223544807224 EDFTIKLI 8 Unmodified _EDFTIKLI_ 0 0 0 ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK;PASK|p.A1137T|1|0.34|ENSG00000115687|chr2:241112364-241112364|C/T|missense_variant;ENST00000475666.1_1_2:242048116-242051833:-|nuORF ENSG00000115687|ENST00000234040|PASK ENSG00000115687|ENST00000234040|PASK MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.778951 977.543348 0.092694 4.54E-05 -1.5332 -0.00075095 -1.4405 -0.00070555 489.77847021784004 148.58 0.1001 143.52 143.47 143.57 -5.0595 0.17724 -0.0017044 NaN 48.346 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 635530 9706 2878 6233 6237 0.053678223544807224 EDFTRITGK 9 Unmodified _EDFTRITGK_ 0 0 0 REV__tr|U7SJS3|U7SJS3_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02071PE=4SV=1 REV__tr|U7SJS3|U7SJS3_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02071PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2649536132812 2 533.780013 1065.54547 0.065397 3.4908E-05 0.33104 0.0001767 0.39643 0.00021161 533.7799532847955 92.475 0.5611 88.55 88.232 88.793 -3.9251 30 15 3 0 0 0 0.58699 1 18082 18082 25.399 0 1 2998000 + 9707 24925 6234 6238 9814 9814 0.015322510922715082 EDFTRNRK 8 Unmodified _EDFTRNRK_ 0 0 0 REV__ENST00000252804.8_1_2:1637315-1637576:-|nuORF REV__ENST00000252804.8_1_2:1637315-1637576:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.275146484375 2 533.275429 1064.53631 NaN NaN NaN NaN NaN NaN NaN 92.758 1 88.614 88.114 89.114 -4.1435 0 0 0 0.22692 1 17675 17675 1.7423 1.4908 1 + 9708 20115 6235 6239 9815 9815 0.0066190252659907856 EDFYLRDCMDY 11 Unmodified _EDFYLRDCMDY_ 0 0 0 REV__CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;REV__ENSG00000084774|ENST00000264705|CAD REV__ENSG00000084774|ENST00000264705|CAD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2730712890625 3 490.528577 1468.5639 NaN NaN NaN NaN NaN NaN NaN 148.19 1 143.48 142.98 143.98 -4.7095 0 0 0 0.23698 1 29422 29422 1.2148 0.70888 1 + 9709 13242;14470 6236 6240 9816 9816 -0.15163743110338146 EDGCCCCCAE 10 Unmodified _EDGCCCCCAE_ 0 0 0 REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 518.1187744140625 2 518.120873 1034.22719 NaN NaN NaN NaN NaN NaN NaN 170.43 1 165.52 165.02 166.02 -4.9149 0 0 0 0.22588 1 33700 33700 0 0 1 + 9710 16255 6237 6241 9817 9817 -0.2885506980533137 EDGDREFVD 9 Unmodified _EDGDREFVD_ 0 0 0 REV__ENSG00000214309|ENST00000398075|MBLAC1 REV__ENSG00000214309|ENST00000398075|MBLAC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2650756835938 2 541.225268 1080.43598 0.44023 0.00023826 0.62272 0.00033703 1.0629 0.00057529 541.2257981935599 74.932 0.67088 74.932 74.639 75.31 0 31 18 3 0 0 0 0.74858 1 14521 14521 22.736 7.898 1 1603500 + 9711 19665 6238 6242 9818 9818 -0.1010179931768107 EDGENPPSSR 10 Unmodified _EDGENPPSSR_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7953491210938 2 544.236167 1086.45778 NaN NaN NaN NaN NaN NaN NaN 80.665 1 77.108 76.608 77.608 -3.557 0 0 0 0.22588 1 15753 15753 13.042 2.9685 1 9712 1648 6239 6243 9819 9819 -0.08198994569124807 EDGEYDAISVY 11 Unmodified _EDGEYDAISVY_ 0 0 0 REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7708129882812 2 630.766965 1259.51938 NaN NaN NaN NaN NaN NaN NaN 125.12 1 120.47 119.97 120.97 -4.6495 0 0 0 0.23324 1 24071 24071 5.7319 0.83484 1 + 9713 15103 6240 6244 9820 9820 -0.10000107660516733 EDGFFVPP 8 Unmodified _EDGFFVPP_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.747802734375 2 454.213443 906.412334 0.23843 0.0001083 1.1964 0.00054343 1.4348 0.00065173 454.21409297567203 75.235 0.49706 71.601 71.467 71.964 -3.6337 18 13 2 0 0 0 1.0095 1 14351 14351 2.5775 0.51773 1 927370 9714 3214 6241 6245 9821 9821 -0.04461568293561413 EDGMVLAVK 9 Unmodified _EDGMVLAVK_ 0 0 0 REV__ENST00000596624.1_2_19:50363311-50363501:-|nuORF REV__ENST00000596624.1_2_19:50363311-50363501:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2550354003906 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 89.949 1 86.09 85.59 86.59 -3.8595 0 0 0 0.20628 1 17598 17598 21.747 4.8044 1 + 9715 23383 6242 6246 9822 9822 0.013190054429287557 EDGPELEEILT 11 Unmodified _EDGPELEEILT_ 0 0 0 nc|ENSG00000254986|Q9NY33-2|DPP3;nc|ENSG00000254986|Q9NY33-4|DPP3;ENSG00000254986|ENST00000531863|DPP3 nc|ENSG00000254986|Q9NY33-2|DPP3 nc|ENSG00000254986|Q9NY33-2|DPP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7627563476562 2 622.798266 1243.58198 NaN NaN NaN NaN NaN NaN NaN 144.15 1 139.08 138.58 139.58 -5.0671 0 0 0 0.23324 1 27797 27797 5.7319 1.7875 1 9716 7928 6243 6247 9823 9823 -0.03006961592313928 EDGPTTRF 8 Unmodified _EDGPTTRF_ 0 0 0 ENSG00000100024|ENST00000326010|UPB1 ENSG00000100024|ENST00000326010|UPB1 ENSG00000100024|ENST00000326010|UPB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.53240966796875 2 461.716882 921.41921 0.14878 6.8695E-05 0.091531 4.2261E-05 0.24031 0.00011096 461.71690149333887 64.305 0.71018 60.889 60.421 61.131 -3.4158 31 19 2 0 0 0 1.0191 1 11951 11951 4.756 2.6963 1 3045700 9717 1921 6244 6248 9824 9824 -0.04464255412995044 EDGRIGTAP 9 Unmodified _EDGRIGTAP_ 0 0 0 ENST00000533300.1_1_8:70746402-70762383:+|nuORF ENST00000533300.1_1_8:70746402-70762383:+|nuORF ENST00000533300.1_1_8:70746402-70762383:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2301330566406 2 458.230156 914.445759 -0.27973 -0.00012818 0.12523 5.7384E-05 -0.1545 -7.0799E-05 458.23020078445694 20.733 0.20763 19.348 19.202 19.41 -1.3847 8 5 2 0 0 0 0.31714 1 3225 3225 30.637 3.7529 1 355230 9718 10993 6245 6249 9825 9825 -0.014885665216525013 EDGRIGTAP 9 Unmodified _EDGRIGTAP_ 0 0 0 ENST00000533300.1_1_8:70746402-70762383:+|nuORF ENST00000533300.1_1_8:70746402-70762383:+|nuORF ENST00000533300.1_1_8:70746402-70762383:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.230156 914.445759 0.22352 0.00010243 0.037413 1.7144E-05 0.26094 0.00011957 458.2301480819281 19.406 0.31192 19.406 19.276 19.588 0 0.06865 -0.00012507 NaN 30.637 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 616030 9719 10993 6245 6249 -0.014885665216525013 EDGSSGGS 8 Unmodified _EDGSSGGS_ 0 0 0 REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2 REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.1271057128906 2 348.127565 694.240577 NaN NaN NaN NaN NaN NaN NaN 52.991 1 50.107 49.607 50.607 -2.8837 0 0 0 0.21486 1 10092 10092 5.7604 0 1 + 9720 17956 6246 6250 9826 9826 -0.11877345051868815 EDGSSGLG 8 Unmodified _EDGSSGLG_ 0 0 0 ENST00000440126.7_1_21:27512552-27512660:-|nuORF ENST00000440126.7_1_21:27512552-27512660:-|nuORF ENST00000440126.7_1_21:27512552-27512660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.1880187988281 2 361.153583 720.292613 NaN NaN NaN NaN NaN NaN NaN 26.917 1 24.995 24.495 25.495 -1.9222 0 0 0 0.23749 1 4476 4476 0.0082765 0 1 9721 9882 6247 6251 9827 9827 -0.07872181638117581 EDGTGVAY 8 Unmodified _EDGTGVAY_ 0 0 0 REV__ENSG00000204347|ENST00000375366|BTBD17 REV__ENSG00000204347|ENST00000375366|BTBD17 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 406.1753234863281 2 406.177058 810.339563 NaN NaN NaN NaN NaN NaN NaN 55.896 1 52.706 52.206 53.206 -3.1895 0 0 0 0.21486 1 10345 10345 5.7604 0 1 + 9722 19527 6248 6252 9828 9828 -0.07319322086993907 EDGTSRAML 9 Unmodified _EDGTSRAML_ 0 0 0 REV__ENST00000535225.6_1_12:51834522-51846003:+|nuORF REV__ENST00000535225.6_1_12:51834522-51846003:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2646484375 2 490.229299 978.444045 NaN NaN NaN NaN NaN NaN NaN 123.5 1 118.9 118.4 119.4 -4.5926 0 0 0 0.22621 1 23775 23775 15.847 1.9411 1 + 9723 22808 6249 6253 9829 9829 -0.04603943601921401 EDGVNFIY 8 Unmodified _EDGVNFIY_ 0 0 0 REV__tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1 REV__tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.720947265625 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 93.165 1 93.165 92.665 93.665 0 0 0 0 0.21181 1 18224 18224 15.768 1.1865 1 + 9724 24935 6250 6254 9830 9830 -0.05078487127468634 EDGVRQKHQLY 11 Unmodified _EDGVRQKHQLY_ 0 0 0 ENST00000462917.1_1_17:39847432-39847507:+|nuORF ENST00000462917.1_1_17:39847432-39847507:+|nuORF ENST00000462917.1_1_17:39847432-39847507:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2372741699219 3 458.237114 1371.68951 NaN NaN NaN NaN NaN NaN NaN 130.14 1 125.5 125 126 -4.6359 0 0 0 0.22632 1 25648 25648 0.172 0.16604 1 9725 10093 6251 6255 9831 9831 0.018534728524400634 EDGYILGLY 9 Unmodified _EDGYILGLY_ 0 0 0 LIPJ|p.F165Lfs*3|1|0.05|ENSG00000204022|chr10:88596330-88596330|T/-|frameshift_variant;LIPJ|p.G278Afs*5|1|0.15|ENSG00000204022|chr10:88605667-88605667|G/-|frameshift_variant;ENSG00000204022|ENST00000371939|LIPJ LIPJ|p.F165Lfs*3|1|0.05|ENSG00000204022|chr10:88596330-88596330|T/-|frameshift_variant LIPJ|p.F165Lfs*3|1|0.05|ENSG00000204022|chr10:88596330-88596330|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2586669921875 2 521.758215 1041.50188 0.19039 9.9336E-05 0.16048 8.373E-05 0.35086 0.00018307 521.7582152554231 113.08 0.88399 113.08 112.63 113.51 0 74 25 4 0 0 0 0.41781 1 22315 22315 24.674 4.2203 1 9010300 9726 7554 6252 6256 9832 9832 -0.01721358404847706 EDHADSASAY 10 Unmodified _EDHADSASAY_ 0 0 0 ETNPPL|p.E328Ifs*14|1|0.03|ENSG00000164089|chr4:108748105-108748106|-/AAAAT|frameshift_variant;nc|ENSG00000164089|Q8TBG4-3|ETNPPL;nc|ENSG00000164089|Q8TBG4-2|ETNPPL;ENSG00000164089|ENST00000296486|ETNPPL ETNPPL|p.E328Ifs*14|1|0.03|ENSG00000164089|chr4:108748105-108748106|-/AAAAT|frameshift_variant ETNPPL|p.E328Ifs*14|1|0.03|ENSG00000164089|chr4:108748105-108748106|-/AAAAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2613525390625 2 533.209618 1064.40468 NaN NaN NaN NaN NaN NaN NaN 140.58 1 135.72 135.22 136.22 -4.8678 0 0 0 0.22588 1 27107 27107 3.9444 0.3479 1 9727 5506 6253 6257 9833 9833 -0.12494372351784477 EDHCEQGTY 9 Unmodified _EDHCEQGTY_ 0 0 0 MEGF10|p.R181H|1|0.15|ENSG00000145794|chr5:127396661-127396661|G/A|missense_variant MEGF10|p.R181H|1|0.15|ENSG00000145794|chr5:127396661-127396661|G/A|missense_variant MEGF10|p.R181H|1|0.15|ENSG00000145794|chr5:127396661-127396661|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27392578125 2 541.198196 1080.38184 0.24792 0.00013417 -0.51523 -0.00027884 -0.2673 -0.00014466 541.1980545204569 64.056 0.81002 61.059 60.661 61.471 -2.9975 34 22 2 0 0 0 0.84208 1 12336 12336 11.64 5.8799 1 1240000 9728 12125 6254 6258 9834 9834 -0.15513714740905016 EDHCEQGTY 9 Unmodified _EDHCEQGTY_ 0 0 0 MEGF10|p.R181H|1|0.15|ENSG00000145794|chr5:127396661-127396661|G/A|missense_variant MEGF10|p.R181H|1|0.15|ENSG00000145794|chr5:127396661-127396661|G/A|missense_variant MEGF10|p.R181H|1|0.15|ENSG00000145794|chr5:127396661-127396661|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2626953125 2 541.198196 1080.38184 NaN NaN NaN NaN NaN NaN NaN 64.931 1 61.473 60.973 61.973 -3.4581 0 0 0 0.23508 1 12142 12142 11.64 4.9171 1 9729 12125 6254 6258 9835 9835 -0.15513714740905016 EDHCEQGTY 9 Unmodified _EDHCEQGTY_ 0 0 0 MEGF10|p.R181H|1|0.15|ENSG00000145794|chr5:127396661-127396661|G/A|missense_variant MEGF10|p.R181H|1|0.15|ENSG00000145794|chr5:127396661-127396661|G/A|missense_variant MEGF10|p.R181H|1|0.15|ENSG00000145794|chr5:127396661-127396661|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2843627929688 2 541.198196 1080.38184 NaN NaN NaN NaN NaN NaN NaN 65.171 1 61.713 61.213 62.213 -3.4581 0 0 0 0.23508 1 12191 12191 11.64 1.5664 1 9730 12125 6254 6258 9836 9836 -0.15513714740905016 EDHCEQGTY 9 Unmodified _EDHCEQGTY_ 0 0 0 MEGF10|p.R181H|1|0.15|ENSG00000145794|chr5:127396661-127396661|G/A|missense_variant MEGF10|p.R181H|1|0.15|ENSG00000145794|chr5:127396661-127396661|G/A|missense_variant MEGF10|p.R181H|1|0.15|ENSG00000145794|chr5:127396661-127396661|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 541.198196 1080.38184 0.26527 0.00014357 -0.13406 -7.2551E-05 0.13122 7.1015E-05 541.1981894815327 64.387 0.14278 60.928 60.803 60.946 -3.4581 -0.065232 0.00026483 NaN 11.64 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 479750 9731 12125 6254 6258 -0.15513714740905016 EDHDATHQL 9 Unmodified _EDHDATHQL_ 0 0 0 ITIH1|p.Q466H|1|0.45|ENSG00000055957|chr3:52784468-52784468|G/T|missense_variant ITIH1|p.Q466H|1|0.45|ENSG00000055957|chr3:52784468-52784468|G/T|missense_variant ITIH1|p.Q466H|1|0.45|ENSG00000055957|chr3:52784468-52784468|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2802124023438 2 533.233427 1064.4523 NaN NaN NaN NaN NaN NaN NaN 153.89 1 149.12 148.62 149.62 -4.7684 0 0 0 0.21065 1 30581 30581 20.454 1.0146 1 9732 11964 6255 6259 9837 9837 -0.0773467336093745 EDHLEDSL 8 Unmodified _EDHLEDSL_ 0 0 0 nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7403564453125 2 479.211629 956.408705 NaN NaN NaN NaN NaN NaN NaN 143.14 1 143.14 142.64 143.64 0 0 0 0 0.21486 1 28556 28556 9.3474 0 1 9733 1141 6256 6260 9838 9838 -0.07124282858092101 EDHLFCQYLFR 11 Unmodified _EDHLFCQYLFR_ 0 0 0 nc|ENSG00000242515|Q9HAW8-2|UGT1A10;ENSG00000242515|ENST00000344644|UGT1A10 nc|ENSG00000242515|Q9HAW8-2|UGT1A10 nc|ENSG00000242515|Q9HAW8-2|UGT1A10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.8605041503906 3 490.899333 1469.67617 NaN NaN NaN NaN NaN NaN NaN 138.84 1 138.84 138.34 139.34 0 0 0 0 0.23429 1 27582 27582 2.2527 1.143 1 9734 7867 6257 6261 9839 9839 -0.03988101251184162 EDHLYRAY 8 Unmodified _EDHLYRAY_ 0 0 0 ENST00000398588.2_1_6:58446590-58447106:-|nuORF ENST00000398588.2_1_6:58446590-58447106:-|nuORF ENST00000398588.2_1_6:58446590-58447106:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.263427734375 2 533.751256 1065.48796 0.69923 0.00037322 0.077772 4.1511E-05 0.777 0.00041473 533.749004030974 87.948 0.21498 83.953 83.868 84.083 -3.9953 7 5 2 0 0 0 1.0095 1 16758 16758 2.5775 1.8871 1 407980 9735 9484 6258 6262 9840 9840 -0.04216591113299728 EDHPSMQL 8 Unmodified _EDHPSMQL_ 0 0 0 REV__ENST00000368178.3_1_1:157738776-157739058:-|nuORF REV__ENST00000368178.3_1_1:157738776-157739058:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7220458984375 2 478.710742 955.406931 NaN NaN NaN NaN NaN NaN NaN 74.394 1 71.03 70.53 71.53 -3.3643 0 0 0 0.21486 1 14512 14512 12.532 2.4576 1 + 9736 20935 6259 6263 9841 9841 -0.0725561514769879 EDHVFSSDYY 10 Unmodified _EDHVFSSDYY_ 0 0 0 ENSG00000185989|ENST00000334062|RASA3;nc|ENSG00000185989|Q14644-2|RASA3 ENSG00000185989|ENST00000334062|RASA3 ENSG00000185989|ENST00000334062|RASA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.748779296875 2 631.254025 1260.4935 0.782 0.00049364 2.2891 0.001445 3.0711 0.0019387 631.2578190653994 114.2 0.17132 109.89 109.82 109.99 -4.3135 6 4 2 0 0 0 0.91149 1 21985 21985 3.9444 0 1 810920 9737 7027 6260 6264 9842 9842 -0.12632957112123222 EDHVIYIRSYF 11 Unmodified _EDHVIYIRSYF_ 0 0 0 REV__ENST00000557290.1_1_14:58737043-58738610:+|nuORF REV__ENST00000557290.1_1_14:58737043-58738610:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24310302734375 3 481.241865 1440.70376 NaN NaN NaN NaN NaN NaN NaN 45.44 1 45.44 44.94 45.94 0 0 0 0 0.22632 1 8542 8542 0.58532 0 1 + 9738 23009 6261 6265 9843 9843 0.0010412528067718085 EDHVIYIRSYF 11 Unmodified _EDHVIYIRSYF_ 0 0 0 REV__ENST00000557290.1_1_14:58737043-58738610:+|nuORF REV__ENST00000557290.1_1_14:58737043-58738610:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2425537109375 3 481.241865 1440.70376 NaN NaN NaN NaN NaN NaN NaN 104.85 1 100.63 100.13 101.13 -4.2183 0 0 0 0.22632 1 20627 20627 0.094841 0.068635 1 + 9739 23009 6261 6265 9844 9844 0.0010412528067718085 EDHVIYIRSYF 11 Unmodified _EDHVIYIRSYF_ 0 0 0 REV__ENST00000557290.1_1_14:58737043-58738610:+|nuORF REV__ENST00000557290.1_1_14:58737043-58738610:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2441711425781 3 481.241865 1440.70376 NaN NaN NaN NaN NaN NaN NaN 113.11 1 108.59 108.09 109.09 -4.5259 0 0 0 0.22632 1 21712 21712 0.03141 0.0052036 1 + 9740 23009 6261 6265 9845 9845 0.0010412528067718085 EDHYHSHY 8 Unmodified _EDHYHSHY_ 0 0 0 REV__ENST00000568980.1_1_15:34781792-34782686:-|nuORF REV__ENST00000568980.1_1_15:34781792-34782686:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78857421875 2 544.215037 1086.41552 NaN NaN NaN NaN NaN NaN NaN 53.042 1 53.042 52.542 53.542 0 0 0 0 0.21486 1 10092 10092 9.3474 1.4373 1 + 9741 14945 6262 6266 9846 9846 -0.12422925186842804 EDICCFCLP 9 Unmodified _EDICCFCLP_ 0 0 0 ENST00000431520.5_1_2:213881686-213886719:-|nuORF ENST00000431520.5_1_2:213881686-213886719:-|nuORF ENST00000431520.5_1_2:213881686-213886719:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2584838867188 2 521.705756 1041.39696 0.59292 0.00030933 -2.4488 -0.0012775 -1.8558 -0.00096821 521.7071615155298 114.18 1.424 109.87 109.37 110.79 -4.3136 222 40 7 0 0 0 0.54354 1 22110 22110 16.942 5.302 1 28390000 9742 9787 6263 6267 9847 9847 -0.12208262468925568 EDIDAKRY 8 Unmodified _EDIDAKRY_ 0 0 0 REV__tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1 REV__tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.5169372558594 3 337.169818 1008.48762 0.26309 8.8706E-05 -1.0733 -0.0003619 -0.81025 -0.00027319 337.5034918393684 21.811 0.21707 20.337 20.266 20.484 -1.4742 7 5 2 0 0 0 0.89108 1 3690 3690 0.62683 0 1 356580 + 9743 25415 6264 6268 9848 9848 -0.016280108331443444 EDIDECENDY 10 Unmodified _EDIDECENDY_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1;SCUBE1|p.G673Wfs*39|1|0.31|ENSG00000159307|chr22:43214126-43214127|-/A|frameshift_variant ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7571411132812 2 622.716615 1243.41868 NaN NaN NaN NaN NaN NaN NaN 120.18 1 120.18 119.68 120.68 0 0 0 0 0.22588 1 23688 23688 6.7232 2.7788 1 9744 5201 6265 6269 9849 9849 -0.19329507705674587 EDIDECENDY 10 Unmodified _EDIDECENDY_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1;SCUBE1|p.G673Wfs*39|1|0.31|ENSG00000159307|chr22:43214126-43214127|-/A|frameshift_variant ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7620239257812 2 622.716615 1243.41868 NaN NaN NaN NaN NaN NaN NaN 125.95 1 121.18 120.68 121.68 -4.7681 0 0 0 0.22588 1 24173 24173 6.7232 2.3939 1 9745 5201 6265 6269 9850 9850 -0.19329507705674587 EDIDECENDY 10 Unmodified _EDIDECENDY_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1;SCUBE1|p.G673Wfs*39|1|0.31|ENSG00000159307|chr22:43214126-43214127|-/A|frameshift_variant ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7777709960938 2 622.716615 1243.41868 NaN NaN NaN NaN NaN NaN NaN 125.99 1 121.22 120.72 121.72 -4.7681 0 0 0 0.22588 1 24180 24180 6.7232 3.1267 1 9746 5201 6265 6269 9851 9851 -0.19329507705674587 EDIDEDSTY 9 Unmodified _EDIDEDSTY_ 0 0 0 REV__nc|ENSG00000239388|A6NK59|ASB14 REV__nc|ENSG00000239388|A6NK59|ASB14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7954711914062 2 543.709116 1085.40368 NaN NaN NaN NaN NaN NaN NaN 124.23 1 119.65 119.15 120.15 -4.5757 0 0 0 0.23508 1 24493 24493 4.3292 0 1 + 9747 19773 6266 6270 9852 9852 -0.13560631511359134 EDIDEDSTY 9 Unmodified _EDIDEDSTY_ 0 0 0 REV__nc|ENSG00000239388|A6NK59|ASB14 REV__nc|ENSG00000239388|A6NK59|ASB14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7929077148438 2 543.709116 1085.40368 0.12092 6.5744E-05 1.8413 0.0010011 1.9622 0.0010669 543.7108151762138 83.089 0.24284 79.215 79.119 79.362 -3.8736 9 6 2 0 0 0 0.84208 1 15800 15800 11.64 3.7301 1 558020 + 9748 19773 6266 6270 9853 9853 -0.13560631511359134 EDIFLITK 8 Unmodified _EDIFLITK_ 0 0 0 REV__nc|ENSG00000124535|Q96S55-3|WRNIP1 REV__nc|ENSG00000124535|Q96S55-3|WRNIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.4472961425781 2 489.778951 977.543348 0.19162 9.3849E-05 0.3982 0.00019503 0.58981 0.00028888 489.7790321677256 143.41 0.68861 143.41 143 143.69 0 30 19 2 0 0 0 8448 2 28565 28565;28639 23.79 4.0709 1 4531400 + 9749 15782 6267 6271 9854;9855 9854 0.05367822354469354 EDIIHEFY 8 Unmodified _EDIIHEFY_ 0 0 0 ENST00000438163.1_1_2:32427703-32427886:+|nuORF ENST00000438163.1_1_2:32427703-32427886:+|nuORF ENST00000438163.1_1_2:32427703-32427886:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2685546875 2 533.248015 1064.48148 NaN NaN NaN NaN NaN NaN NaN 114.45 1 114.45 113.95 114.95 0 0 0 0 0.21486 1 22512 22512 9.3474 0 1 9750 9859 6268 6272 9856 9856 -0.048185290646415524 EDIILHMFQY 10 Unmodified _EDIILHMFQY_ 0 0 0 ENST00000478361.6_1_10:94240585-94297282:-|nuORF;IDE|p.L569Ffs*9|2|0.33|ENSG00000119912|chr10:92483287-92483288|-/A|frameshift_variant;IDE|p.L569Cfs*45|3|0.41|ENSG00000119912|chr10:92483288-92483288|A/-|frameshift_variant;ENSG00000119912|ENST00000265986|IDE ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENST00000478361.6_1_10:94240585-94297282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.217041015625 3 436.88128 1307.62201 NaN NaN NaN NaN NaN NaN NaN 131.52 1 126.73 126.23 127.23 -4.7871 0 0 0 0.22588 1 25318 25318 1.9064 0 1 9751 3106 6269 6273 9857 9857 -0.019496934027529278 EDIIPYMSMHF 11 Unmodified _EDIIPYMSMHF_ 0 0 0 REV__tr|U7STA7|U7STA7_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00988PE=4SV=1 REV__tr|U7STA7|U7STA7_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00988PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.54266357421875 3 461.542158 1381.60464 NaN NaN NaN NaN NaN NaN NaN 135.47 1 130.64 130.14 131.14 -4.8307 0 0 0 0.23698 1 26082 26082 1.3296 0 1 + 9752 25093 6270 6274 9858 9858 -0.07089357000063501 EDIKALNA 8 Unmodified _EDIKALNA_ 0 0 0 ENSG00000143473|ENST00000271751|KCNH1;nc|ENSG00000143473|O95259-2|KCNH1 ENSG00000143473|ENST00000271751|KCNH1 ENSG00000143473|ENST00000271751|KCNH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2359924316406 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 72.792 1 69.253 68.753 69.753 -3.5385 0 0 0 0.21486 1 13803 13803 11.64 0 1 9753 4493 6271 6275 9859 9859 0.019015056264720442 EDIKDMTK 8 Unmodified _EDIKDMTK_ 0 0 0 nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;ENST00000508360.5_1_4:89653076-89671014:-|nuORF nc|ENSG00000138640|O94988-6|FAM13A nc|ENSG00000138640|O94988-6|FAM13A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2646179199219 2 490.241875 978.469197 0.11597 5.6852E-05 0.32824 0.00016092 0.4442 0.00021777 490.2418690723851 71.743 0.52843 68.204 67.869 68.398 -3.5385 24 14 2 0 0 0 0.47729 1 13608 13608 29.082 3.6823 1 2501400 9754 4190 6272 6276 9860 9860 -0.020898887993553217 EDIKFLGTR 9 Unmodified _EDIKFLGTR_ 0 0 0 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.21734619140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 93.126 1 88.983 88.483 89.483 -4.1435 0 0 0 0.23508 1 17748 17748 2.7352 0 1 + 9755 13711 6273 6277 9861 9861 0.0461712798901317 EDIKRQLY 8 Unmodified _EDIKRQLY_ 0 0 0 REV__nc|ENSG00000153046|Q9Y232-3|CDYL REV__nc|ENSG00000153046|Q9Y232-3|CDYL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.265869140625 2 532.790381 1063.56621 0.20393 0.00010865 -3.8974 -0.0020765 -3.6935 -0.0019678 533.2875123383333 154.04 0.10626 149.27 149.22 149.33 -4.7684 4 2 2 0 0 0 0.52597 1 30625 30625 26.884 3.7352 1 714190 + 9756 17132 6274 6278 9862 9862 0.03696841471969492 EDILFAHKI 9 Unmodified _EDILFAHKI_ 0 0 0 REV__ENST00000445636.1_1_13:50935548-50935701:-|nuORF REV__ENST00000445636.1_1_13:50935548-50935701:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7958984375 2 543.303124 1084.5917 0.50067 0.00027202 1.875 0.0010187 2.3757 0.0012907 543.8052158226919 118.66 0.18524 114.05 113.96 114.15 -4.6106 6 4 2 0 0 0 0.55979 1 22784 22784 15.847 2.8047 1 1232600 + 9757 21753 6275 6279 9863 9863 0.05278315994382865 EDILVKPK 8 Unmodified _EDILVKPK_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.8564758300781 3 314.527054 940.559333 0.040397 1.2706E-05 -0.047136 -1.4825E-05 -0.0067387 -2.1195E-06 314.5269840743997 38.97 0.6282 36.528 36.16 36.788 -2.4419 39 17 3 0 0 0 8448 1 6989 6989 8.966 0 1 2389400 9758 1406 6276 6280 9864 9864 0.0866752859137705 EDILVKPK 8 Unmodified _EDILVKPK_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.8573303222656 3 314.527054 940.559333 -0.52301 -0.0001645 0.50468 0.00015873 -0.018333 -5.7663E-06 314.52716347137385 38.974 0.63043 36.569 36.125 36.756 -2.4049 37 17 3 0 0 0 8448 1 6937 6937 19.391 0 1 1641100 9759 1406 6276 6280 9865 9865 0.0866752859137705 EDIPEITY 8 Unmodified _EDIPEITY_ 0 0 0 REV__ENST00000378770.1_1_4:190394307-190396341:+|nuORF REV__ENST00000378770.1_1_4:190394307-190396341:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2647399902344 2 490.234573 978.454593 NaN NaN NaN NaN NaN NaN NaN 58.118 1 58.118 57.618 58.618 0 0 0 0 0.21486 1 11118 11118 9.3474 0.75416 1 + 9760 21123 6277 6281 9866 9866 -0.0354963767586014 EDIQNLTHKY 10 Unmodified _EDIQNLTHKY_ 0 0 0 REV__ENSG00000145192|ENST00000411641|AHSG REV__ENSG00000145192|ENST00000411641|AHSG MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7659912109375 2 630.814584 1259.61462 NaN NaN NaN NaN NaN NaN NaN 125.96 1 121.31 120.81 121.81 -4.6495 0 0 0 0.22588 1 24234 24234 9.3831 2.0939 1 + 9761 16825 6278 6282 9867 9867 -0.004807096788226772 EDIQYIDAY 9 Unmodified _EDIQYIDAY_ 0 0 0 tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1 tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1 tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 566.2576904296875 2 565.256037 1128.49752 0.069471 3.9269E-05 -0.045684 -2.5823E-05 0.023787 1.3446E-05 565.2559040758172 142.39 1.2406 137.36 136.87 138.11 -5.0261 85 35 3 0 0 0 0.74257 1 27340 27340 4.3292 0 1 17829000 9762 26102 6279 6283 9868 9868 -0.061588676184328506 EDIQYIDAY 9 Unmodified _EDIQYIDAY_ 0 0 0 tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1 tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1 tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 565.256037 1128.49752 -0.057023 -3.2233E-05 -0.28123 -0.00015897 -0.33826 -0.0001912 565.2557154413189 142.04 1.3932 137.39 136.85 138.24 -4.6493 0.049803 -4.472E-05 NaN 4.3292 98 39 4 NaN NaN NaN NaN 0 NaN NaN 0 19705000 9763 26102 6279 6283 -0.061588676184328506 EDIQYIDAY 9 Unmodified _EDIQYIDAY_ 0 0 0 tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1 tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1 tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 565.256037 1128.49752 0.30404 0.00017186 -0.39312 -0.00022221 -0.089078 -5.0352E-05 565.2558413861581 142.17 1.1629 137.27 136.75 137.92 -4.8982 -0.07096 -0.00017121 NaN 4.3292 96 32 4 NaN NaN NaN NaN 0 NaN NaN 0 18179000 9764 26102 6279 6283 -0.061588676184328506 EDIRHFNI 8 Unmodified _EDIRHFNI_ 0 0 0 nc|ENSG00000150967|Q9NP78-7|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9;nc|ENSG00000150967|Q9NP78-3|ABCB9;ENST00000538895.5_1_12:123424612-123444782:-|nuORF;nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9 nc|ENSG00000150967|Q9NP78-7|ABCB9 nc|ENSG00000150967|Q9NP78-7|ABCB9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2673950195312 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 147.18 1 142.5 142 143 -4.6868 0 0 0 0.15004 1 29198 29198 18.373 3.4159 1 9765 4842 6280 6284 9869 9869 3.401640651645721E-05 EDIRHFNI 8 Unmodified _EDIRHFNI_ 0 0 0 nc|ENSG00000150967|Q9NP78-7|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9;nc|ENSG00000150967|Q9NP78-3|ABCB9;ENST00000538895.5_1_12:123424612-123444782:-|nuORF;nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9 nc|ENSG00000150967|Q9NP78-7|ABCB9 nc|ENSG00000150967|Q9NP78-7|ABCB9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2665405273438 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 147.95 1 142.8 142.3 143.3 -5.1557 0 0 0 0.21015 1 28636 28636 6.1918 1.4759 1 9766 4842 6280 6284 9870 9870 3.401640651645721E-05 EDIVALLA 8 Unmodified _EDIVALLA_ 0 0 0 tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4037475585938 1 843.482211 842.474934 0.49874 0.00042068 -0.26424 -0.00022289 0.2345 0.0001978 843.4818308096983 149.89 0.73996 149.89 149.55 150.29 0 34 20 2 0 0 0 8448 1 30079 30079 6.3914 0 1 7229500 9767 26032 6281 6285 9871 9871 0.04739577774626014 EDIVALLA 8 Unmodified _EDIVALLA_ 0 0 0 tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4020385742188 1 843.482211 842.474934 0.39204 0.00033068 -0.031825 -2.6844E-05 0.36022 0.00030384 843.4821744835796 155.23 0.97375 149.95 149.53 150.51 -5.2854 45 26 2 0 0 0 0.14825 2 30197 30193;30197 53.576 0 1 9418200 9768 26032 6281 6285 9872;9873 9873 0.04739577774626014 EDIVALLA 8 Unmodified _EDIVALLA_ 0 0 0 tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.4105834960938 1 843.482211 842.474934 0.5653 0.00047682 -0.11687 -9.8575E-05 0.44844 0.00037825 843.4821127263889 155.14 0.81967 149.88 149.58 150.4 -5.2526 40 22 2 0 0 0 0.097641 3 30171 30072;30117;30171 63.563 0 1 6208200 9769 26032 6281 6285 9874;9875;9876 9876 0.04739577774626014 EDIVCVRQ 8 Unmodified _EDIVCVRQ_ 0 0 0 REV__ENST00000487953.1_1_1:233091430-233112053:+|nuORF REV__ENST00000487953.1_1_1:233091430-233112053:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2425231933594 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 56.073 1 52.884 52.384 53.384 -3.1895 0 0 0 0.21452 1 10382 10382 13.508 0 1 + 9770 16290 6282 6286 9877 9877 -0.011950493596373235 EDIYLASRK 9 Unmodified _EDIYLASRK_ 0 0 0 ENSG00000146122|ENST00000274867|DAAM2;nc|ENSG00000146122|Q86T65-4|DAAM2 ENSG00000146122|ENST00000274867|DAAM2 ENSG00000146122|ENST00000274867|DAAM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7840576171875 2 547.795663 1093.57677 0.10937 5.991E-05 0.57045 0.00031249 0.67981 0.0003724 547.7955956704147 88.09 0.36164 84.298 84.088 84.45 -3.7926 15 9 2 0 0 0 0.8319 1 17243 17243 7.9102 5.3327 1 1049500 9771 4641 6283 6287 9878 9878 0.03372824126358864 EDKADEPI 8 Unmodified _EDKADEPI_ 0 0 0 ENSG00000203668|ENST00000366553|CHML;CHML|p.K330Nfs*2|1|0.34|ENSG00000203668|chr1:241634777-241634777|T/-|frameshift_variant ENSG00000203668|ENST00000366553|CHML ENSG00000203668|ENST00000366553|CHML MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23760986328125 2 458.716547 915.418542 0.50675 0.00023245 -0.22087 -0.00010132 0.28587 0.00013114 458.7163905943717 99.509 0.6303 99.509 99.161 99.792 0 22 17 2 0 0 0 0.97173 1 19483 19483 12.532 0 1 1774100 9772 7537 6284 6288 9879 9879 -0.042550948527264154 EDKADLVKY 9 Unmodified _EDKADLVKY_ 0 0 0 nc|ENSG00000169347|P55259-4|GP2;nc|ENSG00000169347|P55259-2|GP2;ENSG00000169347|ENST00000302555|GP2;nc|ENSG00000169347|P55259|GP2 nc|ENSG00000169347|P55259-4|GP2 nc|ENSG00000169347|P55259-4|GP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.270263671875 2 540.782222 1079.54989 0.73783 0.00039901 -0.21194 -0.00011461 0.52589 0.00028439 540.7817331681422 101.43 0.91047 101.43 100.98 101.89 0 117 25 6 0 0 0 0.0045467 7 19867 19829;19841;19867;19881;19930;19974;19991 114.65 39.72 1 54130000 9773 5978 6285 6289 9880;9881;9882;9883;9884;9885;9886 9882 0.013297155152031337 EDKADLVKY 9 Unmodified _EDKADLVKY_ 0 0 0 nc|ENSG00000169347|P55259-4|GP2;nc|ENSG00000169347|P55259-2|GP2;ENSG00000169347|ENST00000302555|GP2;nc|ENSG00000169347|P55259|GP2 nc|ENSG00000169347|P55259-4|GP2 nc|ENSG00000169347|P55259-4|GP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2598266601562 2 540.782222 1079.54989 -0.089376 -4.8333E-05 0.28184 0.00015241 0.19246 0.00010408 540.7819941248412 105.65 1.1587 101.38 100.81 101.97 -4.2638 139 32 7 0 0 0 0.006766 6 20844 20712;20718;20768;20816;20844;20866 111.29 42.182 1 87535000 9774 5978 6285 6289 9887;9888;9889;9890;9891;9892 9891 0.013297155152031337 EDKADLVKY 9 Unmodified _EDKADLVKY_ 0 0 0 nc|ENSG00000169347|P55259-4|GP2;nc|ENSG00000169347|P55259-2|GP2;ENSG00000169347|ENST00000302555|GP2;nc|ENSG00000169347|P55259|GP2 nc|ENSG00000169347|P55259-4|GP2 nc|ENSG00000169347|P55259-4|GP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2835693359375 2 540.782222 1079.54989 0.14681 7.9394E-05 0.25292 0.00013677 0.39973 0.00021617 540.781958471806 105.78 1.1149 101.41 100.91 102.03 -4.3764 143 31 7 0 0 0 0.01249 5 20265 20209;20252;20265;20310;20358 99.799 32.318 1 89165000 9775 5978 6285 6289 9893;9894;9895;9896;9897 9895 0.013297155152031337 EDKADLVKY 9 Unmodified _EDKADLVKY_ 0 0 0 nc|ENSG00000169347|P55259-4|GP2;nc|ENSG00000169347|P55259-2|GP2;ENSG00000169347|ENST00000302555|GP2;nc|ENSG00000169347|P55259|GP2 nc|ENSG00000169347|P55259-4|GP2 nc|ENSG00000169347|P55259-4|GP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2835083007812 2 540.782222 1079.54989 0.82727 0.00044737 -0.64068 -0.00034647 0.18659 0.00010091 540.7815538934075 105.48 1.1524 101.38 100.9 102.05 -4.0913 142 32 6 0 0 0 0.006766 4 20292 20240;20292;20341;20356 111.29 42.182 1 94135000 9776 5978 6285 6289 9898;9899;9900;9901 9899 0.013297155152031337 EDKDMYSNY 9 Unmodified _EDKDMYSNY_ 0 0 0 REV__nc|ENSG00000143469|Q8NB59-3|SYT14 REV__nc|ENSG00000143469|Q8NB59-3|SYT14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 390.814453125 3 388.821978 1163.4441 0.12555 4.8816E-05 -2.0634 -0.0008023 -1.9379 -0.00075348 388.822159104053 106.61 1.0488 106.61 106.22 107.27 0 146 29 7 0 0 0 0.56084 1 20998 20998 0.87518 0.35876 1 32356000 + 9777 16731 6286 6290 9902 9902 -0.13107988392584957 EDKEEEEQPQ 10 Unmodified _EDKEEEEQPQ_ 0 0 0 REV__KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant REV__KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7633056640625 2 630.764954 1259.51536 NaN NaN NaN NaN NaN NaN NaN 26.592 1 26.592 26.092 27.092 0 0 0 0 2.8426 1 4662 4662 0.063865 0 1 + 9778 14520 6287 6291 9903 9903 -0.10402197154235182 EDKEEEEQPQ 10 Unmodified _EDKEEEEQPQ_ 0 0 0 REV__KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant REV__KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7650146484375 2 630.764954 1259.51536 NaN NaN NaN NaN NaN NaN NaN 59.013 1 56.102 55.602 56.602 -2.9105 0 0 0 2.8426 1 11338 11338 0.063865 0.032455 1 + 9779 14520 6287 6291 9904 9904 -0.10402197154235182 EDKETFISYK 10 Unmodified _EDKETFISYK_ 0 0 0 REV__nc|ENSG00000168397|Q9Y4P1-6|ATG4B REV__nc|ENSG00000168397|Q9Y4P1-6|ATG4B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7631225585938 2 630.311343 1258.60813 NaN NaN NaN NaN NaN NaN NaN 28.693 1 26.937 26.437 27.437 -1.7552 0 0 0 0.22588 1 4855 4855 9.3831 0 1 + 9780 18021 6288 6292 9905 9905 -0.010826476302099763 EDKFARTL 8 Unmodified _EDKFARTL_ 0 0 0 REV__ENSG00000130368|ENST00000674077|MAS1 REV__ENSG00000130368|ENST00000674077|MAS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2636413574219 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 78.252 1 78.252 77.752 78.752 0 0 0 0 0.20761 1 15228 15228 19.257 3.4098 1 + 9781 16001 6289 6293 9906 9906 0.023328834091330464 EDKFARTL 8 Unmodified _EDKFARTL_ 0 0 0 REV__ENSG00000130368|ENST00000674077|MAS1 REV__ENSG00000130368|ENST00000674077|MAS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2655334472656 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 81.817 1 78.129 77.629 78.629 -3.6879 0 0 0 0.22681 1 15591 15591 23.79 13.716 1 + 9782 16001 6289 6293 9907 9907 0.023328834091330464 EDKFARTL 8 Unmodified _EDKFARTL_ 0 0 0 REV__ENSG00000130368|ENST00000674077|MAS1 REV__ENSG00000130368|ENST00000674077|MAS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25726318359375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 81.884 1 78.197 77.697 78.697 -3.6879 0 0 0 0.19753 1 15604 15604 25.399 3.6527 1 + 9783 16001 6289 6293 9908 9908 0.023328834091330464 EDKFARTLV 9 Unmodified _EDKFARTLV_ 0 0 0 REV__ENSG00000130368|ENST00000674077|MAS1 REV__ENSG00000130368|ENST00000674077|MAS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2020263671875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 116.36 1 116.36 115.86 116.86 0 0 0 0 0.23508 1 22912 22912 2.7352 0 1 + 9784 16001 6290 6294 9909 9909 0.046171279889904326 EDKFARTLV 9 Unmodified _EDKFARTLV_ 0 0 0 REV__ENSG00000130368|ENST00000674077|MAS1 REV__ENSG00000130368|ENST00000674077|MAS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21539306640625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 116.44 1 116.44 115.94 116.94 0 0 0 0 0.23508 1 22928 22928 2.7352 0 1 + 9785 16001 6290 6294 9910 9910 0.046171279889904326 EDKGDPEMPG 10 Unmodified _EDKGDPEMPG_ 0 0 0 REV__nc|ENSG00000130202|Q92692-2|NECTIN2 REV__nc|ENSG00000130202|Q92692-2|NECTIN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 538.1448364257812 2 537.724046 1073.43354 0.52705 0.00028341 -0.17391 -9.3514E-05 0.35315 0.00018989 537.7239141448101 32.336 0.97866 30.187 29.722 30.701 -2.1483 40 27 2 0 0 0 0.871 1 5529 5529 14.838 10.082 1 1254300 + 9786 24034 6291 6295 9911 9911 -0.100239710470305 EDKGDPEMPG 10 Unmodified _EDKGDPEMPG_ 0 0 0 REV__nc|ENSG00000130202|Q92692-2|NECTIN2 REV__nc|ENSG00000130202|Q92692-2|NECTIN2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 537.724046 1073.43354 0.24355 0.00013096 -0.11413 -6.1371E-05 0.12942 6.9591E-05 537.7239414948941 30.205 0.84436 30.205 29.849 30.693 0 0.068964 5.2423E-05 NaN 14.838 38 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1813100 + 9787 24034 6291 6295 -0.100239710470305 EDKGDPEMPG 10 Unmodified _EDKGDPEMPG_ 0 0 0 REV__nc|ENSG00000130202|Q92692-2|NECTIN2 REV__nc|ENSG00000130202|Q92692-2|NECTIN2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 537.724046 1073.43354 0.32194 0.00017311 -0.10722 -5.7656E-05 0.21472 0.00011546 537.7240341490716 32.251 0.88686 30.02 29.691 30.578 -2.2305 -0.11611 5.9852E-05 NaN 14.838 41 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1291000 + 9788 24034 6291 6295 -0.100239710470305 EDKGDPEMPG 10 Unmodified _EDKGDPEMPG_ 0 0 0 REV__nc|ENSG00000130202|Q92692-2|NECTIN2 REV__nc|ENSG00000130202|Q92692-2|NECTIN2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 537.724046 1073.43354 0.46927 0.00025234 -0.29238 -0.00015722 0.17689 9.5116E-05 537.7238823461228 32.159 0.80966 30.132 29.833 30.643 -2.0264 -0.0039426 -0.00013928 NaN 14.838 42 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1446500 + 9789 24034 6291 6295 -0.100239710470305 EDKHLKIRI 9 Unmodified _EDKHLKIRI_ 0 0 0 CON__P31096 CON__P31096 CON__P31096 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.319580078125 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 142.28 1 142.28 141.78 142.78 0 0 0 0 0.19632 1 28369 28369 0.0033805 0 1 + 9790 670 6292 6296 9912 9912 0.11292785042633113 EDKIKRVDKI 10 Unmodified _EDKIKRVDKI_ 0 0 0 REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7757568359375 2 622.372069 1242.72959 NaN NaN NaN NaN NaN NaN NaN 123.28 1 118.55 118.05 119.05 -4.731 0 0 0 0.22588 1 23681 23681 3.2813 0 1 + 9791 16146 6293 6297 9913 9913 0.11793019522997383 EDKISFQL 8 Unmodified _EDKISFQL_ 0 0 0 ENST00000509080.5_1_5:180629908-180630064:+|nuORF ENST00000509080.5_1_5:180629908-180630064:+|nuORF ENST00000509080.5_1_5:180629908-180630064:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2657470703125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 77.889 1 77.889 77.389 78.389 0 0 0 0 0.20294 1 15152 15152 23.148 0 1 9792 10724 6294 6298 9914 9914 0.012100613149868877 EDKKERFCCC 10 Unmodified _EDKKERFCCC_ 0 0 0 ENST00000296027.4_1_4:74863223-74863334:-|nuORF ENST00000296027.4_1_4:74863223-74863334:-|nuORF ENST00000296027.4_1_4:74863223-74863334:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7606201171875 2 630.762126 1259.5097 NaN NaN NaN NaN NaN NaN NaN 55.965 1 55.965 55.465 56.465 0 0 0 0 2.8426 1 10688 10688 0.013265 0 1 9793 8502 6295 6299 9915 9915 -0.10967613742877802 EDKKMWIE 8 Unmodified _EDKKMWIE_ 0 0 0 REV__IQCA1|p.N612Kfs*25|1|0.24|ENSG00000132321|chr2:236363813-236363814|-/T|frameshift_variant REV__IQCA1|p.N612Kfs*25|1|0.24|ENSG00000132321|chr2:236363813-236363814|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20159912109375 3 360.179437 1077.51648 NaN NaN NaN NaN NaN NaN NaN 99.731 1 95.434 94.934 95.934 -4.297 0 0 0 0.21486 1 19067 19067 1.6526 0.58116 1 + 9794 16105 6296 6300 9916 9916 -0.019176095283455652 EDKLNNAKY 9 Unmodified _EDKLNNAKY_ 0 0 0 ENSG00000120756|ENST00000457734|PLS1 ENSG00000120756|ENST00000457734|PLS1 ENSG00000120756|ENST00000457734|PLS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7861938476562 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 68.237 1 64.847 64.347 65.347 -3.3903 0 0 0 0.23508 1 12878 12878 7.9102 0 1 9795 3153 6297 6301 9917 9917 -0.0026405277033063612 EDKLPEAK 8 Unmodified _EDKLPEAK_ 0 0 0 REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.249755859375 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 112.52 1 108.25 107.75 108.75 -4.2725 0 0 0 0.21486 1 21666 21666 12.532 0 1 + 9796 16393 6298 6302 9918 9918 0.019457747979458873 EDKNGFLKK 9 Unmodified _EDKNGFLKK_ 0 0 0 REV__nc|ENSG00000089177|Q96L93-5|KIF16B REV__nc|ENSG00000089177|Q96L93-5|KIF16B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 94.907 1 91.026 90.526 91.526 -3.881 0 0 0 0.23508 1 18209 18209 5.2969 0 1 + 9797 14525 6299 6303 9919 9919 0.0461712798901317 EDKNTITV 8 Unmodified _EDKNTITV_ 0 0 0 REV__LRRIQ1|p.K1224N|1|0.23|ENSG00000133640|chr12:85124184-85124184|G/T|missense_variant REV__LRRIQ1|p.K1224N|1|0.23|ENSG00000133640|chr12:85124184-85124184|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23992919921875 2 460.24019 918.465826 0.24109 0.00011096 -0.45791 -0.00021075 -0.21682 -9.9788E-05 460.2398491412787 35.523 0.4105 35.523 35.346 35.757 0 19 11 2 0 0 0 0.69713 1 6558 6558 14.838 0 1 648440 + 9798 23820 6300 6304 9920 9920 0.0033318441827532297 EDKQNRQR 8 Unmodified _EDKQNRQR_ 0 0 0 ENSG00000215853|ENST00000316073|RPTN ENSG00000215853|ENST00000316073|RPTN ENSG00000215853|ENST00000316073|RPTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 358.87860107421875 3 358.519733 1072.53737 -0.4148 -0.00014871 0.46355 0.00016619 0.048747 1.7477E-05 358.51981550726015 63.942 0.79972 60.685 60.329 61.129 -3.2567 33 22 3 0 0 0 0.89108 1 11958 11958 0.25148 0.25148 1 1364800 9799 7753 6301 6305 9921 9921 0.004001168955255707 EDKRFLISA 9 Unmodified _EDKRFLISA_ 0 0 0 tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1 tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1 tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2051086425781 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 77.405 1 77.405 76.905 77.905 0 0 0 0 0.23508 1 15050 15050 7.9454 0 1 9800 25915 6302 6306 9922 9922 0.0461712798901317 EDKSQVTL 8 Unmodified _EDKSQVTL_ 0 0 0 tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2388000488281 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 73.386 1 69.792 69.292 70.292 -3.594 0 0 0 0.21171 1 13928 13928 15.847 0 1 9801 25996 6303 6307 9923 9923 0.0033318441828669165 EDKVSIYKL 9 Unmodified _EDKVSIYKL_ 0 0 0 MYH8|p.E348D|1|0.11|ENSG00000133020|chr17:10414005-10414005|C/A|missense_variant MYH8|p.E348D|1|0.11|ENSG00000133020|chr17:10414005-10414005|C/A|missense_variant MYH8|p.E348D|1|0.11|ENSG00000133020|chr17:10414005-10414005|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7864379882812 2 547.808239 1093.60193 0.53057 0.00029065 -0.34584 -0.00018945 0.18473 0.0001012 547.8079956084154 101.76 0.65398 97.741 97.425 98.079 -4.0212 29 18 2 0 0 0 0.64382 1 19614 19614 10.074 2.7847 1 1525400 9802 12185 6304 6308 9924 9924 0.058868789289590495 EDKYKKRDY 9 Unmodified _EDKYKKRDY_ 0 0 0 REV__nc|ENSG00000179119|Q68D10-2|SPTY2D1 REV__nc|ENSG00000179119|Q68D10-2|SPTY2D1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7753295898438 2 622.817127 1243.6197 NaN NaN NaN NaN NaN NaN NaN 121.28 1 116.59 116.09 117.09 -4.6873 0 0 0 0.23508 1 23281 23281 7.2892 1.5574 1 + 9803 18640 6305 6309 9925 9925 0.007635941838316285 EDLAASLEA 9 Unmodified _EDLAASLEA_ 0 0 0 ENSG00000184675|ENST00000374869|AMER1;AMER1|p.G1103Vfs*36|1|0.05|ENSG00000184675|chrX:64189979-64189980|-/TATATATATATATATATATACACACA|frameshift_variant ENSG00000184675|ENST00000374869|AMER1 ENSG00000184675|ENST00000374869|AMER1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2361755371094 2 459.724372 917.434192 0.18542 8.5241E-05 0.056301 2.5883E-05 0.24172 0.00011112 459.7243713683507 61.492 1.073 58.253 57.787 58.86 -3.2395 62 30 3 0 0 0 0.072678 1 11535 11535 18.614 0 1 4729400 9804 146 6306 6310 9926 9926 -0.027828083356666866 EDLAEIVQ 8 Unmodified _EDLAEIVQ_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23876953125 2 458.73474 915.454927 -0.46648 -0.00021399 0.44146 0.00020251 -0.025019 -1.1477E-05 458.7349287903625 106.55 0.80141 102.29 101.94 102.74 -4.2638 45 22 3 0 0 0 0.30817 1 20981 20981 42.095 0 1 2912200 9805 2799 6307 6311 9927 9927 -0.0061821795599144025 EDLAEIVQ 8 Unmodified _EDLAEIVQ_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23828125 2 458.73474 915.454927 0.71733 0.00032906 -0.3404 -0.00015615 0.37692 0.00017291 458.734463274917 106.5 0.79891 102.4 102.05 102.85 -4.0913 48 22 3 0 0 0 0.30817 1 20460 20460 42.095 6.0504 1 2679300 9806 2799 6307 6311 9928 9928 -0.0061821795599144025 EDLASLKF 8 Unmodified _EDLASLKF_ 0 0 0 ENST00000471383.5_1_2:202131194-202137540:+|nuORF;CASP8|p.V205Gfs*13|1|0.13|ENSG00000064012|chr2:201274902-201274903|-/G|frameshift_variant;nc|ENSG00000064012|Q14790-6|CASP8;nc|ENSG00000064012|Q14790-5|CASP8;CASP8|p.G234Dfs*4|1|0.36|ENSG00000064012|chr2:201276864-201276864|G/-|frameshift_variant;nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF;CASP8|p.I357Yfs*8|1|0.35|ENSG00000064012|chr2:201285075-201285076|-/T|frameshift_variant;CASP8|p.F356Lfs*26|1|0.21|ENSG00000064012|chr2:201285076-201285076|T/-|frameshift_variant;nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;CASP8|p.K461Efs*19|1|0.36|ENSG00000064012|chr2:201286530-201286531|-/G|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8 ENST00000471383.5_1_2:202131194-202137540:+|nuORF ENST00000471383.5_1_2:202131194-202137540:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5294494628906 2 461.74765 921.480748 0.13103 6.0502E-05 0.11174 5.1596E-05 0.24277 0.0001121 461.74767074058235 86.767 0.9743 86.767 86.317 87.291 0 45 27 2 0 0 0 0.66247 1 16909 16909 18.146 2.8979 1 2099200 9807 397 6308 6312 9929 9929 0.01686676286283273 EDLASLKF 8 Unmodified _EDLASLKF_ 0 0 0 ENST00000471383.5_1_2:202131194-202137540:+|nuORF;CASP8|p.V205Gfs*13|1|0.13|ENSG00000064012|chr2:201274902-201274903|-/G|frameshift_variant;nc|ENSG00000064012|Q14790-6|CASP8;nc|ENSG00000064012|Q14790-5|CASP8;CASP8|p.G234Dfs*4|1|0.36|ENSG00000064012|chr2:201276864-201276864|G/-|frameshift_variant;nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF;CASP8|p.I357Yfs*8|1|0.35|ENSG00000064012|chr2:201285075-201285076|-/T|frameshift_variant;CASP8|p.F356Lfs*26|1|0.21|ENSG00000064012|chr2:201285076-201285076|T/-|frameshift_variant;nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;CASP8|p.K461Efs*19|1|0.36|ENSG00000064012|chr2:201286530-201286531|-/G|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8 ENST00000471383.5_1_2:202131194-202137540:+|nuORF ENST00000471383.5_1_2:202131194-202137540:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5436096191406 2 461.74765 921.480748 0.28909 0.00013349 0.32964 0.00015221 0.61873 0.0002857 461.747703619827 90.903 0.76587 86.808 86.428 87.194 -4.0946 42 21 3 0 0 0 0.15482 1 17297 17297 52.268 17.867 1 3083200 9808 397 6308 6312 9930 9930 0.01686676286283273 EDLASLKF 8 Unmodified _EDLASLKF_ 0 0 0 ENST00000471383.5_1_2:202131194-202137540:+|nuORF;CASP8|p.V205Gfs*13|1|0.13|ENSG00000064012|chr2:201274902-201274903|-/G|frameshift_variant;nc|ENSG00000064012|Q14790-6|CASP8;nc|ENSG00000064012|Q14790-5|CASP8;CASP8|p.G234Dfs*4|1|0.36|ENSG00000064012|chr2:201276864-201276864|G/-|frameshift_variant;nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF;CASP8|p.I357Yfs*8|1|0.35|ENSG00000064012|chr2:201285075-201285076|-/T|frameshift_variant;CASP8|p.F356Lfs*26|1|0.21|ENSG00000064012|chr2:201285076-201285076|T/-|frameshift_variant;nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;CASP8|p.K461Efs*19|1|0.36|ENSG00000064012|chr2:201286530-201286531|-/G|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8 ENST00000471383.5_1_2:202131194-202137540:+|nuORF ENST00000471383.5_1_2:202131194-202137540:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.74765 921.480748 -0.13634 -6.2957E-05 0.8495 0.00039225 0.71315 0.0003293 461.74793515446464 90.656 0.93304 86.796 86.404 87.337 -3.8595 0.0067938 0.00035142 NaN 52.268 54 26 3 NaN NaN NaN NaN 0 NaN NaN 0 3892800 9809 397 6308 6312 0.01686676286283273 EDLASLKF 8 Unmodified _EDLASLKF_ 0 0 0 ENST00000471383.5_1_2:202131194-202137540:+|nuORF;CASP8|p.V205Gfs*13|1|0.13|ENSG00000064012|chr2:201274902-201274903|-/G|frameshift_variant;nc|ENSG00000064012|Q14790-6|CASP8;nc|ENSG00000064012|Q14790-5|CASP8;CASP8|p.G234Dfs*4|1|0.36|ENSG00000064012|chr2:201276864-201276864|G/-|frameshift_variant;nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF;CASP8|p.I357Yfs*8|1|0.35|ENSG00000064012|chr2:201285075-201285076|-/T|frameshift_variant;CASP8|p.F356Lfs*26|1|0.21|ENSG00000064012|chr2:201285076-201285076|T/-|frameshift_variant;nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;CASP8|p.K461Efs*19|1|0.36|ENSG00000064012|chr2:201286530-201286531|-/G|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8 ENST00000471383.5_1_2:202131194-202137540:+|nuORF ENST00000471383.5_1_2:202131194-202137540:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.74765 921.480748 0.15343 7.0845E-05 0.47601 0.0002198 0.62944 0.00029064 461.7477955968546 90.565 1.1803 86.787 86.259 87.439 -3.7779 -0.0028528 6.5088E-06 NaN 52.268 58 33 3 NaN NaN NaN NaN 0 NaN NaN 0 3382500 9810 397 6308 6312 0.01686676286283273 EDLCSQYD 8 Unmodified _EDLCSQYD_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.1250915527344 3 324.792019 971.354227 -0.48463 -0.00015741 -3.9053 -0.0012684 -4.3899 -0.0014258 324.7907652358049 20.385 0.21937 20.385 20.276 20.495 0 8 5 2 0 0 0 0.89225 1 3390 3390 6.2058 1.3088 1 167050 9811 4752 6309 6313 9931 9931 -0.13259618001166018 EDLDKSHL 8 Unmodified _EDLDKSHL_ 0 0 0 NCOR2|p.E2073D|1|0.59|ENSG00000196498|chr12:124335529-124335529|C/A|missense_variant NCOR2|p.E2073D|1|0.59|ENSG00000196498|chr12:124335529-124335529|C/A|missense_variant NCOR2|p.E2073D|1|0.59|ENSG00000196498|chr12:124335529-124335529|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7377014160156 2 478.737814 955.461075 -0.39415 -0.0001887 1.0125 0.00048472 0.61835 0.00029603 478.7381340427982 66.957 0.5631 66.957 66.664 67.227 0 30 15 3 0 0 0 0.0942 1 12972 12972 64.236 2.8788 1 3930300 9812 12678 6310 6314 9932 9932 -0.018436997244748454 EDLDKSHL 8 Unmodified _EDLDKSHL_ 0 0 0 NCOR2|p.E2073D|1|0.59|ENSG00000196498|chr12:124335529-124335529|C/A|missense_variant NCOR2|p.E2073D|1|0.59|ENSG00000196498|chr12:124335529-124335529|C/A|missense_variant NCOR2|p.E2073D|1|0.59|ENSG00000196498|chr12:124335529-124335529|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7290954589844 2 478.737814 955.461075 -0.090713 -4.3428E-05 0.42779 0.0002048 0.33708 0.00016137 478.7380054370721 70.057 0.63385 66.807 66.476 67.11 -3.2492 28 17 2 0 0 0 0.078324 1 13685 13685 67.344 12.57 1 4141000 9813 12678 6310 6314 9933 9933 -0.018436997244748454 EDLDKSHL 8 Unmodified _EDLDKSHL_ 0 0 0 NCOR2|p.E2073D|1|0.59|ENSG00000196498|chr12:124335529-124335529|C/A|missense_variant NCOR2|p.E2073D|1|0.59|ENSG00000196498|chr12:124335529-124335529|C/A|missense_variant NCOR2|p.E2073D|1|0.59|ENSG00000196498|chr12:124335529-124335529|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73785400390625 2 478.737814 955.461075 0.3657 0.00017507 -0.36737 -0.00017587 -0.0016657 -7.9744E-07 478.73766608390264 70.541 0.63909 66.961 66.625 67.264 -3.5798 33 17 2 0 0 0 8448 2 13290 13290;13339 18.373 0 1 3606400 9814 12678 6310 6314 9934;9935 9934 -0.018436997244748454 EDLDKSHL 8 Unmodified _EDLDKSHL_ 0 0 0 NCOR2|p.E2073D|1|0.59|ENSG00000196498|chr12:124335529-124335529|C/A|missense_variant NCOR2|p.E2073D|1|0.59|ENSG00000196498|chr12:124335529-124335529|C/A|missense_variant NCOR2|p.E2073D|1|0.59|ENSG00000196498|chr12:124335529-124335529|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7378845214844 2 478.737814 955.461075 0.34264 0.00016403 -0.14286 -6.8392E-05 0.19978 9.5642E-05 478.73773864087667 70.464 0.7054 66.997 66.638 67.343 -3.467 34 19 2 0 0 0 0.12867 1 13402 13402 57.471 6.6163 1 2939800 9815 12678 6310 6314 9936 9936 -0.018436997244748454 EDLDPVSEDPE 11 Unmodified _EDLDPVSEDPE_ 0 0 0 ENSG00000198816|ENST00000597229|ZNF358 ENSG00000198816|ENST00000597229|ZNF358 ENSG00000198816|ENST00000597229|ZNF358 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7562255859375 2 622.76188 1243.50921 NaN NaN NaN NaN NaN NaN NaN 142.22 1 137.32 136.82 137.82 -4.8982 0 0 0 0.22943 1 27441 27441 8.7454 4.801 1 9816 7501 6311 6315 9937 9937 -0.10280715385761141 EDLDRRYNMEK 11 Unmodified _EDLDRRYNMEK_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2688903808594 3 490.233152 1467.67763 0.26851 0.00013163 -0.085199 -4.1767E-05 0.18331 8.9864E-05 490.2330404591025 158.23 0.18228 152.96 152.83 153.02 -5.2748 8 4 2 0 0 0 0.66087 1 30699 30699 1.4551 0 1 913540 9817 3370 6312 6316 9938 9938 -0.03750511953080604 EDLECQQN 8 Unmodified _EDLECQQN_ 0 0 0 REV__sp|Q6SW65|CVC2_HCMVMCapsidvertexcomponent2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC2PE=3SV=1 REV__sp|Q6SW65|CVC2_HCMVMCapsidvertexcomponent2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC2PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2647399902344 2 489.695289 977.376025 -0.077223 -3.7816E-05 -1.016 -0.00049752 -1.0932 -0.00053534 489.69449608280917 90.251 0.4209 86.473 86.152 86.573 -3.7779 17 11 2 0 0 0 0.93477 1 17283 17283 24.674 10.092 1 887770 + 9818 24706 6313 6317 9939 9939 -0.11356813252587017 EDLEKYVKK 9 Unmodified _EDLEKYVKK_ 0 0 0 nc|ENSG00000144130|Q86YG4|NT5DC4;ENSG00000144130|ENST00000688554|NT5DC4 nc|ENSG00000144130|Q86YG4|NT5DC4 nc|ENSG00000144130|Q86YG4|NT5DC4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3278198242188 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 142.11 1 137.22 136.72 137.72 -4.8857 0 0 0 0.19652 1 27419 27419 0.029283 0 1 9819 4543 6314 6318 9940 9940 0.05410263957674033 EDLEPLGT 8 Unmodified _EDLEPLGT_ 0 0 0 nc|ENSG00000148200|Q15406-3|NR6A1;nc|ENSG00000148200|Q15406-5|NR6A1;nc|ENSG00000148200|Q15406-2|NR6A1;nc|ENSG00000148200|Q15406-4|NR6A1;ENSG00000148200|ENST00000487099|NR6A1 nc|ENSG00000148200|Q15406-3|NR6A1 nc|ENSG00000148200|Q15406-3|NR6A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.215087890625 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 73.711 1 70.035 69.535 70.535 -3.6764 0 0 0 0.20896 1 13933 13933 18.135 4.6271 1 9820 4732 6315 6319 9941 9941 -0.028581933643749835 EDLFIFFY 8 Unmodified _EDLFIFFY_ 0 0 0 ENST00000608477.1_1_7:128169020-128169233:-|nuORF ENST00000608477.1_1_7:128169020-128169233:-|nuORF ENST00000608477.1_1_7:128169020-128169233:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7698974609375 2 547.265676 1092.5168 0.32968 0.00018042 3.0215 0.0016535 3.3511 0.001834 547.7692160368681 134.96 0.13956 134.96 134.85 134.99 0 5 3 2 0 0 0 0.72861 1 26730 26730 10.183 0.83596 1 2177700 9821 11765 6316 6320 9942 9942 -0.025758665368584843 EDLGAGNLEY 10 Unmodified _EDLGAGNLEY_ 0 0 0 GIMAP8|p.D577Y|1|0.11|ENSG00000171115|chr7:150477511-150477511|G/T|missense_variant GIMAP8|p.D577Y|1|0.11|ENSG00000171115|chr7:150477511-150477511|G/T|missense_variant GIMAP8|p.D577Y|1|0.11|ENSG00000171115|chr7:150477511-150477511|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2667236328125 2 540.745836 1079.47712 0.23614 0.00012769 0.2344 0.00012675 0.47054 0.00025445 540.7459859963267 96.417 0.7246 96.417 96.011 96.736 0 31 20 2 0 0 0 0.37059 1 18870 18870 32.786 5.1569 1 2701900 9822 11849 6317 6321 9943 9943 -0.05944038278221342 EDLGAGNLEY 10 Unmodified _EDLGAGNLEY_ 0 0 0 GIMAP8|p.D577Y|1|0.11|ENSG00000171115|chr7:150477511-150477511|G/T|missense_variant GIMAP8|p.D577Y|1|0.11|ENSG00000171115|chr7:150477511-150477511|G/T|missense_variant GIMAP8|p.D577Y|1|0.11|ENSG00000171115|chr7:150477511-150477511|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2626953125 2 540.745836 1079.47712 0.42116 0.00022774 0.0054154 2.9283E-06 0.42657 0.00023067 540.7457812729866 100.66 0.54364 96.669 96.381 96.925 -3.9895 34 15 3 0 0 0 0.57807 1 19344 19344 20.415 2.2682 1 2471900 9823 11849 6317 6321 9944 9944 -0.05944038278221342 EDLGETVCSL 10 Unmodified _EDLGETVCSL_ 0 0 0 ENSG00000167702|ENST00000645548|KIFC2;ENST00000301332.2_1_8:145698463-145698769:+|nuORF ENSG00000167702|ENST00000645548|KIFC2 ENSG00000167702|ENST00000645548|KIFC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2823486328125 2 533.242072 1064.46959 0.60236 0.0003212 3.6987 0.0019723 4.301 0.0022935 533.7439316278152 103.48 0.55423 99.138 98.929 99.483 -4.346 20 15 2 0 0 0 0.87854 1 19786 19786 5.7319 3.8876 1 1149700 9824 5838 6318 6322 9945 9945 -0.06006513870147501 EDLHFVAV 8 Unmodified _EDLHFVAV_ 0 0 0 ENSG00000214376|ENST00000409977|VSTM5 ENSG00000214376|ENST00000409977|VSTM5 ENSG00000214376|ENST00000409977|VSTM5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2406311035156 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 70.047 1 66.58 66.08 67.08 -3.467 0 0 0 0.2074 1 13257 13257 19.439 0 1 9825 7726 6319 6323 9946 9946 -0.0016619051090174253 EDLIMLDI 8 Unmodified _EDLIMLDI_ 0 0 0 nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1 nc|ENSG00000090861|P49588-2|AARS1 nc|ENSG00000090861|P49588-2|AARS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2493896484375 2 481.249169 960.483784 NaN NaN NaN NaN NaN NaN NaN 113.39 1 108.87 108.37 109.37 -4.5259 0 0 0 0.21452 1 21768 21768 13.508 0 1 9826 1793 6320 6324 9947 9947 0.001961833487939657 EDLKALQNL 9 Unmodified _EDLKALQNL_ 0 0 0 ENSG00000155530|ENST00000285928|LRGUK;LRGUK|p.T659Hfs*19|1|0.22|ENSG00000155530|chr7:134221904-134221904|A/-|frameshift_variant;LRGUK|p.T659Nfs*26|1|0.44|ENSG00000155530|chr7:134221903-134221904|-/A|frameshift_variant ENSG00000155530|ENST00000285928|LRGUK ENSG00000155530|ENST00000285928|LRGUK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2822875976562 2 522.290214 1042.56587 0.36935 0.00019291 -0.050049 -2.614E-05 0.31931 0.00016677 522.2901305793827 107.72 1.206 107.72 106.93 108.14 0 85 34 4 0 0 0 0.36931 1 21092 21092 27.629 3.6082 1 13831000 9827 5049 6321 6325 9948 9948 0.04629421752088092 EDLKALQNL 9 Unmodified _EDLKALQNL_ 0 0 0 ENSG00000155530|ENST00000285928|LRGUK;LRGUK|p.T659Hfs*19|1|0.22|ENSG00000155530|chr7:134221904-134221904|A/-|frameshift_variant;LRGUK|p.T659Nfs*26|1|0.44|ENSG00000155530|chr7:134221903-134221904|-/A|frameshift_variant ENSG00000155530|ENST00000285928|LRGUK ENSG00000155530|ENST00000285928|LRGUK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2800903320312 2 522.290214 1042.56587 -0.46516 -0.00024295 0.57544 0.00030055 0.11028 5.7597E-05 522.2905709503507 112.16 1.3937 107.74 106.68 108.07 -4.4231 112 39 4 0 0 0 0.44932 1 21907 21907 22.736 3.4793 1 8852800 9828 5049 6321 6325 9949 9949 0.04629421752088092 EDLKALQNL 9 Unmodified _EDLKALQNL_ 0 0 0 ENSG00000155530|ENST00000285928|LRGUK;LRGUK|p.T659Hfs*19|1|0.22|ENSG00000155530|chr7:134221904-134221904|A/-|frameshift_variant;LRGUK|p.T659Nfs*26|1|0.44|ENSG00000155530|chr7:134221903-134221904|-/A|frameshift_variant ENSG00000155530|ENST00000285928|LRGUK ENSG00000155530|ENST00000285928|LRGUK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2810668945312 2 522.290214 1042.56587 0.64923 0.00033908 -0.53483 -0.00027934 0.1144 5.9748E-05 522.2900438261307 112.03 1.3263 107.8 106.94 108.26 -4.2289 87 37 4 0 0 0 0.11717 1 21416 21416 49.933 0 1 9294000 9829 5049 6321 6325 9950 9950 0.04629421752088092 EDLLCKLQ 8 Unmodified _EDLLCKLQ_ 0 0 0 REV__ENSG00000150667|ENST00000350221|FSIP1 REV__ENSG00000150667|ENST00000350221|FSIP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2447509765625 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 77.863 1 74.204 73.704 74.704 -3.6588 0 0 0 0.22674 1 14830 14830 14.838 4.7643 1 + 9830 17039 6322 6326 9951 9951 0.013190054429401243 EDLLKEHY 8 Unmodified _EDLLKEHY_ 0 0 0 ENST00000512768.1_1_17:49231734-49237541:+|nuORF;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;nc|ENSG00000243678|P22392-2|NME2 ENST00000512768.1_1_17:49231734-49237541:+|nuORF ENST00000512768.1_1_17:49231734-49237541:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6880493164062 2 523.761289 1045.50803 NaN NaN NaN NaN NaN NaN NaN 125.74 1 125.74 125.24 126.24 0 0 0 0 0.21292 1 24804 24804 14.838 2.5976 1 9831 7837 6323 6327 9952 9952 -0.01290840173351171 EDLLLIKPK 9 Unmodified _EDLLLIKPK_ 0 0 0 REV__ENSG00000004846|ENST00000404938|ABCB5 REV__ENSG00000004846|ENST00000404938|ABCB5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5623779296875 3 356.893625 1067.65905 -0.26462 -9.4439E-05 0.02544 9.0792E-06 -0.23918 -8.536E-05 356.89370865417726 123.29 0.5677 123.29 123.06 123.63 0 22 15 2 0 0 0 0.60489 1 24298 24298 0.029283 0 1 1423800 + 9832 13841 6324 6328 9953 9953 0.12792346205310423 EDLLLIKPK 9 Unmodified _EDLLLIKPK_ 0 0 0 REV__ENSG00000004846|ENST00000404938|ABCB5 REV__ENSG00000004846|ENST00000404938|ABCB5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 356.893625 1067.65905 -0.26462 -9.4439E-05 0.02544 9.0792E-06 -0.23918 -8.536E-05 356.89370865417726 123.29 0.5677 123.29 123.06 123.63 0 0 0 NaN 0.029283 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1423800 + 9833 13841 6324 6328 0.12792346205310423 EDLLTDIP 8 Unmodified _EDLLTDIP_ 0 0 0 ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4;ENTPD4|p.V203Cfs*14|1|0.3|ENSG00000197217|chr8:23443911-23443911|G/-|frameshift_variant;ENTPD4|p.N300Kfs*5|1|0.29|ENSG00000197217|chr8:23439898-23439899|-/T|frameshift_variant ENST00000523958.5_1_8:23291828-23307413:-|nuORF ENST00000523958.5_1_8:23291828-23307413:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2362365722656 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 49.82 1 46.814 46.314 47.314 -3.0068 0 0 0 0.21323 1 9143 9143 14.582 0 1 9834 7342 6325 6329 9954 9954 -0.0009733381323258072 EDLMNMQHC 9 Unmodified _EDLMNMQHC_ 0 0 0 ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10;ENST00000488481.1_1_X:153199817-153200402:-|nuORF;ENST00000478177.1_1_X:153199394-153200402:-|nuORF ENST00000466877.5_1_X:153197755-153200402:-|nuORF ENST00000466877.5_1_X:153197755-153200402:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2208251953125 3 374.145522 1119.41474 -0.17694 -6.6202E-05 2.0748 0.00077629 1.8979 0.00071009 374.4805862507177 117.52 0.8755 117.52 117.09 117.97 0 74 24 4 0 0 0 0.72996 1 23143 23143 4.897 0.36815 1 7302000 9835 2105 6326 6330 9955 9955 -0.14019547214070371 EDLNDWVA 8 Unmodified _EDLNDWVA_ 0 0 0 ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.253173828125 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 78.658 1 78.658 78.158 79.158 0 0 0 0 0.19954 1 15307 15307 24.674 1.5255 1 9836 6192 6327 6331 9956 9956 -0.0629167513285438 EDLNNNEM 8 Unmodified _EDLNNNEM_ 0 0 0 REV__ENSG00000145723|ENST00000399004|GIN1 REV__ENSG00000145723|ENST00000399004|GIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2766418457031 2 489.695289 977.376025 0.051301 2.5122E-05 -1.2917 -0.00063253 -1.2404 -0.00060741 489.69459179816636 90.207 0.49654 86.347 86.154 86.65 -3.8595 19 13 2 0 0 0 0.74718 1 17643 17643 24.674 8.8267 1 723490 + 9837 16849 6328 6332 9957 9957 -0.11356813252587017 EDLPALSV 8 Unmodified _EDLPALSV_ 0 0 0 REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4010620117188 1 843.445825 842.438549 0.28318 0.00023885 0.042805 3.6103E-05 0.32598 0.00027495 843.4459331961857 134.21 0.68695 129.34 128.96 129.65 -4.8726 28 19 2 0 0 0 0.036491 2 25815 25715;25815 100.37 0 1 3911500 + 9838 13369 6329 6333 9958;9959 9959 0.011027008779024072 EDLPALSV 8 Unmodified _EDLPALSV_ 0 0 0 REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.37646484375 1 843.445825 842.438549 0.37534 0.00031658 0.032328 2.7267E-05 0.40767 0.00034385 843.4458132676782 134.13 0.70129 129.31 128.95 129.65 -4.8175 31 19 2 0 0 0 0.059776 1 25805 25805 112.59 0 1 4127300 + 9839 13369 6329 6333 9960 9960 0.011027008779024072 EDLPALSV 8 Unmodified _EDLPALSV_ 0 0 0 REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 843.445825 842.438549 0.37495 0.00031625 -0.017491 -1.4753E-05 0.35746 0.0003015 843.4456484327646 133.94 0.67163 129.3 128.92 129.6 -4.6399 -0.015645 -3.4516E-05 NaN 100.37 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 5544000 + 9840 13369 6329 6333 0.011027008779024072 EDLPALSV 8 Unmodified _EDLPALSV_ 0 0 0 REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 843.445825 842.438549 0.28318 0.00023885 0.042805 3.6103E-05 0.32598 0.00027495 843.4459331961857 134.21 0.68695 129.34 128.96 129.65 -4.8726 0.023936 1.6341E-05 NaN 100.37 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3911500 + 9841 13369 6329 6333 0.011027008779024072 EDLPALSV 8 Unmodified _EDLPALSV_ 0 0 0 REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 843.445825 842.438549 0.37534 0.00031658 0.032328 2.7267E-05 0.40767 0.00034385 843.4458132676782 134.13 0.70129 129.31 128.95 129.65 -4.8175 -0.0082903 7.504E-06 NaN 100.37 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 4127300 + 9842 13369 6329 6333 0.011027008779024072 EDLQLCFL 8 Unmodified _EDLQLCFL_ 0 0 0 REV__nc|ENSG00000166263|Q6ZWJ1-2|STXBP4 REV__nc|ENSG00000166263|Q6ZWJ1-2|STXBP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25799560546875 2 490.741511 979.468469 0.61488 0.00030175 -1.7038 -0.00083612 -1.0889 -0.00053437 490.740148818649 101.86 0.59796 101.86 101.64 102.24 0 40 16 3 0 0 0 0.74718 1 20035 20035 18.135 0 1 4289000 + 9843 17834 6330 6334 9961 9961 -0.02208683448395732 EDLQSEHSRC 10 Unmodified _EDLQSEHSRC_ 0 0 0 PCNT|p.G428S|1|0.19|ENSG00000160299|chr21:46349758-46349758|G/A|missense_variant PCNT|p.G428S|1|0.19|ENSG00000160299|chr21:46349758-46349758|G/A|missense_variant PCNT|p.G428S|1|0.19|ENSG00000160299|chr21:46349758-46349758|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2975463867188 2 602.256576 1202.4986 NaN NaN NaN NaN NaN NaN NaN 138.92 1 133.97 133.47 134.47 -4.952 0 0 0 0.22588 1 26719 26719 5.2969 0.54088 1 9844 12764 6331 6335 9962 9962 -0.09454976521146818 EDLRKELY 8 Unmodified _EDLRKELY_ 0 0 0 ENST00000609477.5_1_6:125555503-125614049:-|nuORF;ENST00000608461.1_1_6:125598188-125614049:-|nuORF;nc|ENSG00000111906|Q7Z4H3-2|HDDC2;ENSG00000111906|ENST00000398153|HDDC2 ENST00000609477.5_1_6:125555503-125614049:-|nuORF ENST00000609477.5_1_6:125555503-125614049:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28369140625 2 533.282389 1064.55022 0.50266 0.00026806 -2.7666 -0.0014754 -2.264 -0.0012073 533.7816762426331 150.28 0.17557 145.09 144.95 145.13 -5.1994 6 4 2 0 0 0 0.66265 1 29116 29116 18.135 1.1927 1 819450 9845 2658 6332 6336 9963 9963 0.020531352350417365 EDLRKYEE 8 Unmodified _EDLRKYEE_ 0 0 0 REV__ENSG00000173786|ENST00000393892|CNP REV__ENSG00000173786|ENST00000393892|CNP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2653198242188 2 541.261653 1080.50875 0.21369 0.00011566 0.60458 0.00032723 0.81827 0.0004429 541.2622193787894 78.021 0.67569 74.557 74.181 74.857 -3.4633 44 16 4 0 0 0 0.66247 1 15180 15180 18.146 0 1 4150600 + 9846 18374 6333 6337 9964 9964 -0.028280455242793323 EDLRQCLNRY 10 Unmodified _EDLRQCLNRY_ 0 0 0 nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1 nc|ENSG00000110841|Q86W92-3|PPFIBP1 nc|ENSG00000110841|Q86W92-3|PPFIBP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21466064453125 3 437.215433 1308.62447 NaN NaN NaN NaN NaN NaN NaN 90.318 1 86.541 86.041 87.041 -3.7779 0 0 0 0.22588 1 17284 17284 6.1918 0.40842 1 9847 2589 6334 6338 9965 9965 -0.017498449450613407 EDLRRAAHN 9 Unmodified _EDLRRAAHN_ 0 0 0 CON__ENSEMBL:ENSBTAP00000007350 CON__ENSEMBL:ENSBTAP00000007350 CON__ENSEMBL:ENSBTAP00000007350 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2801513671875 2 541.278503 1080.54245 NaN NaN NaN NaN NaN NaN NaN 63.412 1 60.415 59.915 60.915 -2.9975 0 0 0 0.22193 1 12252 12252 17.113 0.96379 1 + 9848 638 6335 6339 9966 9966 0.005404207581477749 EDLRVEVT 8 Unmodified _EDLRVEVT_ 0 0 0 SLC22A9|p.P546L|1|0.21|ENSG00000149742|chr11:63409837-63409837|C/T|missense_variant SLC22A9|p.P546L|1|0.21|ENSG00000149742|chr11:63409837-63409837|C/T|missense_variant SLC22A9|p.P546L|1|0.21|ENSG00000149742|chr11:63409837-63409837|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2543029785156 2 480.753464 959.492375 0.63763 0.00030654 -1.5393 -0.00074004 -0.90171 -0.0004335 480.75281917941214 107.8 0.38682 103.67 103.46 103.84 -4.135 13 10 2 0 0 0 0.70613 1 20767 20767 13.508 0 1 403820 9849 25676 6336 6340 9967 9967 0.011008733096218748 EDLSDIASL 9 Unmodified _EDLSDIASL_ 0 0 0 ENST00000464026.1_1_1:118426024-118439585:-|nuORF;GDAP2|p.F440Lfs*9|2|0.27|ENSG00000196505|chr1:117878135-117878135|A/-|frameshift_variant;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2 ENST00000464026.1_1_1:118426024-118439585:-|nuORF ENST00000464026.1_1_1:118426024-118439585:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25372314453125 2 481.73748 961.460406 0.068079 3.2796E-05 -0.76939 -0.00037064 -0.70131 -0.00033785 481.7372064557283 78.909 0.69792 75.399 75.029 75.727 -3.5102 30 19 2 0 0 0 0.72864 1 15359 15359 11.64 4.3511 1 919540 9850 7275 6337 6341 9968 9968 -0.021865391641881615 EDLSELMTNQ 10 Unmodified _EDLSELMTNQ_ 0 0 0 REV__TCHHL1|p.L720M|1|0.26|ENSG00000182898|chr1:152085524-152085524|G/T|missense_variant REV__TCHHL1|p.L720M|1|0.26|ENSG00000182898|chr1:152085524-152085524|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.265625 2 590.263536 1178.51252 NaN NaN NaN NaN NaN NaN NaN 69.624 1 66.234 65.734 66.734 -3.3903 0 0 0 0.22583 1 13171 13171 13.906 4.5229 1 + 9851 24781 6338 6342 9969 9969 -0.06959743812717534 EDLSETKIF 9 Unmodified _EDLSETKIF_ 0 0 0 nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L nc|ENSG00000143569|Q14157-4|UBAP2L nc|ENSG00000143569|Q14157-4|UBAP2L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2744750976562 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 151.07 1 145.83 145.33 146.33 -5.2365 0 0 0 0.18064 1 29278 29278 26.268 0 1 9852 4505 6339 6343 9970 9970 -0.0031399072172462184 EDLSEWDKR 9 Unmodified _EDLSEWDKR_ 0 0 0 REV__ZNF195|p.F271Ifs*19|1|0.28|ENSG00000005801|chr11:3360197-3360198|-/T|frameshift_variant REV__ZNF195|p.F271Ifs*19|1|0.28|ENSG00000005801|chr11:3360197-3360198|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2593383789062 2 589.277835 1176.54112 0.25837 0.00015225 -0.13155 -7.752E-05 0.12682 7.4735E-05 589.277559943428 63.324 0.7909 60.067 59.677 60.468 -3.2567 50 22 3 0 0 0 0.54354 1 11934 11934 16.942 2.104 1 7037900 + 9853 13862 6340 6344 9971 9971 -0.04009258121300263 EDLSEWDKR 9 Unmodified _EDLSEWDKR_ 0 0 0 REV__ZNF195|p.F271Ifs*19|1|0.28|ENSG00000005801|chr11:3360197-3360198|-/T|frameshift_variant REV__ZNF195|p.F271Ifs*19|1|0.28|ENSG00000005801|chr11:3360197-3360198|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.277835 1176.54112 0.57083 0.00033637 -0.51286 -0.00030222 0.057961 3.4155E-05 589.2774107720668 63.519 0.80895 60.103 59.72 60.529 -3.4158 0.062646 -0.00037017 NaN 16.942 50 22 3 NaN NaN NaN NaN 0 NaN NaN 0 6055400 + 9854 13862 6340 6344 -0.04009258121300263 EDLSEWDKR 9 Unmodified _EDLSEWDKR_ 0 0 0 REV__ZNF195|p.F271Ifs*19|1|0.28|ENSG00000005801|chr11:3360197-3360198|-/T|frameshift_variant REV__ZNF195|p.F271Ifs*19|1|0.28|ENSG00000005801|chr11:3360197-3360198|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 589.277835 1176.54112 0.25837 0.00015225 -0.13155 -7.752E-05 0.12682 7.4735E-05 589.277559943428 63.324 0.7909 60.067 59.677 60.468 -3.2567 0.026778 7.923E-05 NaN 16.942 50 22 3 NaN NaN NaN NaN 0 NaN NaN 0 7037900 + 9855 13862 6340 6344 -0.04009258121300263 EDLSLSKQ 8 Unmodified _EDLSLSKQ_ 0 0 0 nc|ENSG00000173276|Q9ULJ3-2|ZBTB21;ENSG00000173276|ENST00000310826|ZBTB21 nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2397766113281 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 36.24 1 33.963 33.463 34.463 -2.2766 0 0 0 0.21452 1 6389 6389 13.508 3.3245 1 9856 6285 6341 6345 9972 9972 0.0033318441829806034 EDLSPHPLSS 10 Unmodified _EDLSPHPLSS_ 0 0 0 ENSG00000100625|ENST00000216513|SIX4 ENSG00000100625|ENST00000216513|SIX4 ENSG00000100625|ENST00000216513|SIX4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2625732421875 2 541.261653 1080.50875 0.10118 5.4766E-05 1.5985 0.00086523 1.6997 0.00091999 541.2629069865609 78.189 1.155 74.53 74.129 75.284 -3.6588 43 16 3 0 0 0 0.40256 1 14920 14920 30.637 0.79596 1 5026600 9857 1998 6342 6346 9973 9973 -0.028280455242793323 EDLSRSFFWS 10 Unmodified _EDLSRSFFWS_ 0 0 0 REV__ENST00000529978.1_1_8:12870155-12879550:+|nuORF REV__ENST00000529978.1_1_8:12870155-12879550:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2367248535156 3 425.199777 1272.5775 0.094761 4.0292E-05 1.0347 0.00043996 1.1295 0.00048026 425.2002434165824 96.865 0.59305 96.865 96.598 97.191 0 22 16 2 0 0 0 0.72703 1 18954 18954 8.4443 8.4443 1 1179500 + 9858 19824 6343 6347 9974 9974 -0.04788381224580007 EDLSSIDAM 9 Unmodified _EDLSSIDAM_ 0 0 0 REV__tr|U7T4U8|U7T4U8_FUSNUPutativeN-acetylmannosamine-6-phosphate2-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nanEPE=3SV=1 REV__tr|U7T4U8|U7T4U8_FUSNUPutativeN-acetylmannosamine-6-phosphate2-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nanEPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.276611328125 2 490.71569 979.416827 0.43646 0.00021418 1.1464 0.00056253 1.5828 0.00077671 490.71598979351654 90.459 0.45753 86.415 86.091 86.548 -4.0443 15 12 2 0 0 0 0.77732 1 17218 17218 12.532 0 1 508460 + 9859 25395 6344 6348 9975 9975 -0.07370471932961209 EDLSSLANL 9 Unmodified _EDLSSLANL_ 0 0 0 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2542419433594 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 101.15 1 101.15 100.65 101.65 0 0 0 0 0.22251 1 19848 19848 16.942 2.3606 1 + 9860 24010 6345 6349 9976 9976 -0.005428329272717747 EDLTAGSY 8 Unmodified _EDLTAGSY_ 0 0 0 REV__ENSG00000160801|ENST00000449590|PTH1R REV__ENSG00000160801|ENST00000449590|PTH1R MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 428.13409423828125 2 428.190165 854.365778 NaN NaN NaN NaN NaN NaN NaN 66.456 1 63.409 62.909 63.909 -3.047 0 0 0 0.21486 1 12878 12878 5.7604 2.8712 1 + 9861 17437 6346 6350 9977 9977 -0.06723052915504013 EDLTEKKP 8 Unmodified _EDLTEKKP_ 0 0 0 ENSG00000160200|ENST00000398165|CBS;nc|ENSG00000160200|P35520-2|CBS;ENST00000462349.5_1_21:44473992-44479496:-|nuORF ENSG00000160200|ENST00000398165|CBS ENSG00000160200|ENST00000398165|CBS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2391662597656 2 480.25584 958.497126 0.23965 0.00011509 0.019712 9.4669E-06 0.25936 0.00012456 480.2558619137213 115.34 0.84712 110.79 110.4 111.25 -4.555 38 23 2 0 0 0 0.74818 1 22117 22117 7.2892 0.56607 1 2434400 9862 5236 6347 6351 9978 9978 0.01621757452392103 EDLTEKKP 8 Unmodified _EDLTEKKP_ 0 0 0 ENSG00000160200|ENST00000398165|CBS;nc|ENSG00000160200|P35520-2|CBS;ENST00000462349.5_1_21:44473992-44479496:-|nuORF ENSG00000160200|ENST00000398165|CBS ENSG00000160200|ENST00000398165|CBS MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.25584 958.497126 -0.0017225 -8.2722E-07 0.30687 0.00014738 0.30515 0.00014655 480.25603225422697 110.8 0.76898 110.8 110.51 111.27 0 0.014061 0.0001572 NaN 7.2892 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1915700 9863 5236 6347 6351 0.01621757452392103 EDLTEKKP 8 Unmodified _EDLTEKKP_ 0 0 0 ENSG00000160200|ENST00000398165|CBS;nc|ENSG00000160200|P35520-2|CBS;ENST00000462349.5_1_21:44473992-44479496:-|nuORF ENSG00000160200|ENST00000398165|CBS ENSG00000160200|ENST00000398165|CBS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.25584 958.497126 0.021647 1.0396E-05 0.56226 0.00027003 0.58391 0.00028042 480.2561029484912 115.2 0.82867 110.72 110.26 111.08 -4.4726 -0.066203 0.00040251 NaN 7.2892 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 3329800 9864 5236 6347 6351 0.01621757452392103 EDLTEKKP 8 Unmodified _EDLTEKKP_ 0 0 0 ENSG00000160200|ENST00000398165|CBS;nc|ENSG00000160200|P35520-2|CBS;ENST00000462349.5_1_21:44473992-44479496:-|nuORF ENSG00000160200|ENST00000398165|CBS ENSG00000160200|ENST00000398165|CBS MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.25584 958.497126 0.23965 0.00011509 0.019712 9.4669E-06 0.25936 0.00012456 480.2558619137213 115.34 0.84712 110.79 110.4 111.25 -4.555 -0.002141 -0.00011861 NaN 7.2892 38 23 2 NaN NaN NaN NaN 0 NaN NaN 0 2434400 9865 5236 6347 6351 0.01621757452392103 EDLTEKKP 8 Unmodified _EDLTEKKP_ 0 0 0 ENSG00000160200|ENST00000398165|CBS;nc|ENSG00000160200|P35520-2|CBS;ENST00000462349.5_1_21:44473992-44479496:-|nuORF ENSG00000160200|ENST00000398165|CBS ENSG00000160200|ENST00000398165|CBS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.25584 958.497126 0.48023 0.00023063 -0.25392 -0.00012195 0.22631 0.00010869 480.25574543081404 115.16 0.84579 110.84 110.48 111.33 -4.3135 0.054283 -0.00038144 NaN 7.2892 38 23 2 NaN NaN NaN NaN 0 NaN NaN 0 2332200 9866 5236 6347 6351 0.01621757452392103 EDLTVINI 8 Unmodified _EDLTVINI_ 0 0 0 ENST00000573523.5_1_17:4574736-4578861:-|nuORF;ENSG00000141456|ENST00000572293|PELP1 ENST00000573523.5_1_17:4574736-4578861:-|nuORF ENST00000573523.5_1_17:4574736-4578861:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2340087890625 2 458.752933 915.491313 0.019665 9.0212E-06 0.42804 0.00019636 0.4477 0.00020539 458.753040883127 85.225 0.61629 81.513 81.22 81.837 -3.7117 24 17 2 0 0 0 0.70215 1 16297 16297 36.127 3.3413 1 1631900 9867 11436 6348 6352 9979 9979 0.030186589406980602 EDLVAIGY 8 Unmodified _EDLVAIGY_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 441.7055358886719 2 440.226551 878.438549 0.1242 5.4677E-05 0.068607 3.0203E-05 0.19281 8.4879E-05 440.22650197628064 128.1 1.4142 123.28 122.71 124.13 -4.817 100 39 4 0 0 0 8448 1 24614 24614 15.478 0 1 21178000 9868 1641 6349 6353 9980 9980 -0.005532991220889016 EDLVAIGY 8 Unmodified _EDLVAIGY_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 440.226551 878.438549 0.177 7.7921E-05 -0.035441 -1.5602E-05 0.14156 6.2319E-05 440.2264547224745 122.95 1.2347 122.95 122.47 123.71 0 -0.19864 -0.00015894 NaN 15.478 86 34 4 NaN NaN NaN NaN 0 NaN NaN 0 22692000 9869 1641 6349 6353 -0.005532991220889016 EDLVAIGY 8 Unmodified _EDLVAIGY_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 440.226551 878.438549 -0.060121 -2.6467E-05 0.24964 0.0001099 0.18952 8.3431E-05 440.22660401997024 127.77 1.4174 123.15 122.64 124.06 -4.6172 -0.0028409 9.2059E-05 NaN 15.478 104 39 4 NaN NaN NaN NaN 0 NaN NaN 0 31484000 9870 1641 6349 6353 -0.005532991220889016 EDLVAIGY 8 Unmodified _EDLVAIGY_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 440.226551 878.438549 0.0018149 7.9897E-07 0.2547 0.00011213 0.25652 0.00011293 440.226599301947 127.93 1.3761 123.23 122.68 124.05 -4.6998 0.074119 9.6519E-05 NaN 15.478 87 38 3 NaN NaN NaN NaN 0 NaN NaN 0 20798000 9871 1641 6349 6353 -0.005532991220889016 EDLVLRFFL 9 Unmodified _EDLVLRFFL_ 0 0 0 REV__sp|F5HA06|UL147_HCMVMPutativeviralCXCchemokine2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL147PE=3SV=1 REV__sp|F5HA06|UL147_HCMVMPutativeviralCXCchemokine2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL147PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3275146484375 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 136.78 1 136.78 136.28 137.28 0 0 0 0 0.1963 1 27111 27111 0.029283 0.027901 1 + 9872 24676 6350 6354 9981 9981 0.06935175545504535 EDLVLRFFL 9 Unmodified _EDLVLRFFL_ 0 0 0 REV__sp|F5HA06|UL147_HCMVMPutativeviralCXCchemokine2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL147PE=3SV=1 REV__sp|F5HA06|UL147_HCMVMPutativeviralCXCchemokine2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL147PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3289794921875 2 576.326599 1150.63865 0.058975 3.3989E-05 0.18524 0.00010676 0.24422 0.00014075 576.3270926484349 141.96 0.21452 137.31 137.13 137.35 -4.6493 7 5 2 0 0 0 0.55728 1 28034 28034 0.029283 0.016017 1 7641600 + 9873 24676 6350 6354 9982 9982 0.06935175545504535 EDLVRMGH 8 Unmodified _EDLVRMGH_ 0 0 0 ENSG00000099338|ENST00000409235|CATSPERG;CATSPERG|p.P884Qfs*18|1|0.48|ENSG00000099338|chr19:38367188-38367188|C/-|frameshift_variant ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73406982421875 2 478.734551 955.45455 NaN NaN NaN NaN NaN NaN NaN 125.33 1 120.73 120.23 121.23 -4.5984 0 0 0 0.21452 1 24711 24711 13.508 0 1 9874 1888 6351 6355 9983 9983 -0.024959161568290256 EDLYRIERAVD 11 Unmodified _EDLYRIERAVD_ 0 0 0 REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2366027832031 3 460.236891 1377.68884 NaN NaN NaN NaN NaN NaN NaN 51.098 1 48.216 47.716 48.716 -2.8824 0 0 0 0.22632 1 9704 9704 0.026206 0.02025 1 + 9875 24110 6352 6356 9984 9984 0.0151063341270401 EDLYSRYKKLQ 11 Unmodified _EDLYSRYKKLQ_ 0 0 0 PSMC4|p.R200Efs*65|2|0.33|ENSG00000013275|chr19:39974747-39974747|C/-|frameshift_variant;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF PSMC4|p.R200Efs*65|2|0.33|ENSG00000013275|chr19:39974747-39974747|C/-|frameshift_variant PSMC4|p.R200Efs*65|2|0.33|ENSG00000013275|chr19:39974747-39974747|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2467346191406 3 481.592786 1441.75653 NaN NaN NaN NaN NaN NaN NaN 160.48 1 155.23 154.73 155.73 -5.2526 0 0 0 0.22632 1 31151 31151 5.4027 3.9476 1 9876 1091 6353 6357 9985 9985 0.053320833435236636 EDLYSRYKKLQ 11 Unmodified _EDLYSRYKKLQ_ 0 0 0 PSMC4|p.R200Efs*65|2|0.33|ENSG00000013275|chr19:39974747-39974747|C/-|frameshift_variant;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF PSMC4|p.R200Efs*65|2|0.33|ENSG00000013275|chr19:39974747-39974747|C/-|frameshift_variant PSMC4|p.R200Efs*65|2|0.33|ENSG00000013275|chr19:39974747-39974747|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7749328613281 3 481.592786 1441.75653 NaN NaN NaN NaN NaN NaN NaN 161.73 1 156.54 156.04 157.04 -5.1878 0 0 0 0.22632 1 31389 31389 5.4027 2.3304 1 9877 1091 6353 6357 9986 9986 0.053320833435236636 EDLYVDPPA 9 Unmodified _EDLYVDPPA_ 0 0 0 REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 509.28570556640625 2 509.740022 1017.46549 -0.16765 -8.5456E-05 -1.6198 -0.0008257 -1.7875 -0.00091115 509.73868787685086 45.129 0.45191 42.382 42.029 42.481 -2.7475 15 12 2 0 0 0 0.8204 1 8185 8185 4.756 0 1 477380 + 9878 17748 6354 6358 9987 9987 -0.04254235301573317 EDMDLCSQM 9 Unmodified _EDMDLCSQM_ 0 0 0 SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.I2020Nfs*4|1|0.32|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant;SETX|p.S1600*|1|0.07|ENSG00000107290|chr9:132326800-132326801|-/A|frameshift_variant;SETX|p.F1748Sfs*3|1|0.55|ENSG00000107290|chr9:132326355-132326355|A/-|frameshift_variant SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5533447265625 3 357.797899 1070.37187 -0.18329 -6.558E-05 -1.7029 -0.00060929 -1.8862 -0.00067487 357.7980321529038 109.59 0.67023 105.13 104.75 105.42 -4.4518 39 18 3 0 0 0 0.64253 1 21066 21066 0.029283 0.021006 1 832710 9879 2419 6355 6359 9988 9988 -0.16050362062173917 EDMDLCSQM 9 Unmodified _EDMDLCSQM_ 0 0 0 SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.I2020Nfs*4|1|0.32|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant;SETX|p.S1600*|1|0.07|ENSG00000107290|chr9:132326800-132326801|-/A|frameshift_variant;SETX|p.F1748Sfs*3|1|0.55|ENSG00000107290|chr9:132326355-132326355|A/-|frameshift_variant SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.797899 1070.37187 -0.025921 -9.2746E-06 0.39521 0.00014141 0.36929 0.00013213 357.79806565298196 109.28 0.70387 105.09 104.63 105.33 -4.1826 0.098777 0.0002898 NaN 0.029283 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1048900 9880 2419 6355 6359 -0.16050362062173917 EDMDYEEL 8 Unmodified _EDMDYEEL_ 0 0 0 tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1 tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1 tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.280517578125 2 522.19733 1042.38011 0.32824 0.0001714 1.7832 0.00093118 2.1114 0.0011026 522.1985553029159 141.77 0.5968 136.91 136.57 137.17 -4.8677 15 11 2 0 0 0 1.0147 1 27377 27377 5.2307 3.3864 1 2805600 9881 26176 6356 6360 9989 9989 -0.13938768549542147 EDMEDLEMSY 10 Unmodified _EDMEDLEMSY_ 0 0 0 REV__ENSG00000198173|ENST00000358047|FAM47C REV__ENSG00000198173|ENST00000358047|FAM47C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7777099609375 2 631.233587 1260.45262 0.85183 0.0005377 -1.2199 -0.00077005 -0.36808 -0.00023235 631.2328349488623 103.27 0.73714 99.251 99.065 99.802 -4.0212 29 20 2 0 0 0 0.90091 1 19860 19860 3.2813 0 1 3336400 + 9882 19395 6357 6361 9990 9990 -0.1671880253825293 EDMISAVKS 9 Unmodified _EDMISAVKS_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2528991699219 2 490.241875 978.469197 NaN NaN NaN NaN NaN NaN NaN 112.53 1 108.25 107.75 108.75 -4.2725 0 0 0 0.22251 1 21668 21668 16.942 2.3606 1 9883 1057 6358 6362 9991 9991 -0.020898887993553217 EDMLSPAPP 9 Unmodified _EDMLSPAPP_ 0 0 0 REV__ENSG00000078804|ENST00000374810|TP53INP2 REV__ENSG00000078804|ENST00000374810|TP53INP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7235107421875 2 478.723318 955.432083 0.32936 0.00015767 0.47238 0.00022614 0.80173 0.00038381 478.7234255228666 79.971 2.3781 79.971 79.132 81.51 0 120 67 2 0 0 0 0.38188 1 15714 15714 26.884 1.4843 1 3798900 + 9884 14387 6359 6363 9992 9992 -0.047415603451327115 EDMLSPAPP 9 Unmodified _EDMLSPAPP_ 0 0 0 REV__ENSG00000078804|ENST00000374810|TP53INP2 REV__ENSG00000078804|ENST00000374810|TP53INP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7232360839844 2 478.723318 955.432083 -0.016123 -7.7184E-06 0.9467 0.00045321 0.93058 0.00044549 478.7237034430472 84.068 2.6812 80.46 79.266 81.948 -3.6079 138 76 2 0 0 0 0.35443 1 16571 16571 28.487 5.3384 1 3096100 + 9885 14387 6359 6363 9993 9993 -0.047415603451327115 EDMNLNED 8 Unmodified _EDMNLNED_ 0 0 0 nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2730407714844 2 490.187297 978.36004 NaN NaN NaN NaN NaN NaN NaN 142.21 1 137.18 136.68 137.68 -5.0261 0 0 0 0.21486 1 27403 27403 8.5933 2.8329 1 9886 4265 6360 6364 9994 9994 -0.13000519489492035 EDMPFSYISMY 11 Unmodified _EDMPFSYISMY_ 0 0 0 REV__ENSG00000069956|ENST00000261845|MAPK6 REV__ENSG00000069956|ENST00000261845|MAPK6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.52764892578125 3 461.526285 1381.55703 NaN NaN NaN NaN NaN NaN NaN 40.322 1 37.782 37.282 38.282 -2.5398 0 0 0 0.2341 1 7221 7221 5.0475 3.7179 1 + 9887 14246 6361 6365 9995 9995 -0.11849055990910529 EDMTHCSP 8 Unmodified _EDMTHCSP_ 0 0 0 ENSG00000168038|ENST00000301831|ULK4 ENSG00000168038|ENST00000301831|ULK4 ENSG00000168038|ENST00000301831|ULK4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24737548828125 2 460.167853 918.321152 0.065812 3.0285E-05 1.9264 0.00088646 1.9922 0.00091675 460.1709888108578 36.73 1.0974 34.382 33.863 34.96 -2.3479 111 31 5 0 0 0 1.0147 1 6484 6484 5.2307 0 1 2329300 9888 5872 6362 6366 9996 9996 -0.141275233248507 EDNDMDEY 8 Unmodified _EDNDMDEY_ 0 0 0 tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1 tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1 tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.1165771484375 3 344.11505 1029.32332 -0.11199 -3.8537E-05 0.44408 0.00015281 0.33209 0.00011428 344.1158568572771 106.22 0.20563 106.22 106.09 106.29 0 7 5 2 0 0 0 0.86089 1 20891 20891 1.6526 0 1 692850 9889 26096 6363 6367 9997 9997 -0.19016816106045553 EDNDNEDGGRG 11 Unmodified _EDNDNEDGGRG_ 0 0 0 ENST00000438766.1_1_2:139654799-139654901:+|nuORF ENST00000438766.1_1_2:139654799-139654901:+|nuORF ENST00000438766.1_1_2:139654799-139654901:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2610473632812 2 589.221245 1176.42794 0.66867 0.00039399 1.6054 0.00094595 2.2741 0.0013399 589.2231114907682 115.96 0.78711 111.38 110.94 111.73 -4.5815 52 22 4 0 0 0 0.563 1 22226 22226 0.172 0 1 2922900 9890 9863 6364 6368 9998 9998 -0.15321978305132689 EDNFSFNASG 10 Unmodified _EDNFSFNASG_ 0 0 0 REV__CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant REV__CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7955932617188 2 544.219985 1086.42542 0.6147 0.00033453 -0.81228 -0.00044206 -0.19758 -0.00010753 544.2194484462225 99.73 0.69193 99.73 99.41 100.1 0 39 19 3 0 0 0 0.91149 1 19547 19547 1.3295 1.3295 1 3557400 + 9891 13322 6365 6369 9999 9999 -0.1143378197216407 EDNIVVKL 8 Unmodified _EDNIVVKL_ 0 0 0 REV__tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1 REV__tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.250244140625 2 465.26875 928.522947 -0.0266 -1.2376E-05 0.0042621 1.983E-06 -0.022338 -1.0393E-05 465.26859026090466 98.154 0.90186 94.038 93.554 94.456 -4.1164 51 25 3 0 0 0 0.19607 1 19208 19208 46.021 9.8939 1 3391300 + 9892 25398 6366 6370 10000 10000 0.05582651694669494 EDNIVVKL 8 Unmodified _EDNIVVKL_ 0 0 0 REV__tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1 REV__tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2468566894531 2 465.26875 928.522947 -0.0266 -1.2376E-05 0.0042621 1.983E-06 -0.022338 -1.0393E-05 465.26859026090466 98.154 0.90186 94.038 93.554 94.456 -4.1164 51 25 3 0 0 0 0.38287 1 19260 19260 46.021 9.8939 1 3391300 + 9893 25398 6366 6370 10001 10001 0.05582651694669494 EDNIVVKL 8 Unmodified _EDNIVVKL_ 0 0 0 REV__tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1 REV__tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2406005859375 2 465.26875 928.522947 0.15736 7.3217E-05 -0.24526 -0.00011411 -0.087894 -4.0894E-05 465.2685612970886 98.546 0.93827 94.277 93.672 94.61 -4.2692 54 26 3 0 0 0 0.35245 1 18853 18853 49.933 3.912 1 3349600 + 9894 25398 6366 6370 10002 10002 0.05582651694669494 EDNIVVKL 8 Unmodified _EDNIVVKL_ 0 0 0 REV__tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1 REV__tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2572937011719 2 465.26875 928.522947 0.088472 4.1163E-05 -0.049823 -2.3181E-05 0.038649 1.7982E-05 465.2686344857421 98.2 0.8822 94.244 93.749 94.631 -3.9564 55 25 3 0 0 0 0.27447 1 18793 18793 37.974 3.8716 1 3018400 + 9895 25398 6366 6370 10003 10003 0.05582651694669494 EDNKPEAI 8 Unmodified _EDNKPEAI_ 0 0 0 tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1 tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1 tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2242736816406 2 458.224539 914.434526 0.4249 0.0001947 -0.22746 -0.00010423 0.19744 9.0473E-05 458.22438308935915 50.626 0.75771 50.626 50.3 51.058 0 35 21 2 0 0 0 0.68128 1 9545 9545 16.942 2.104 1 2477200 9896 26395 6367 6371 10004 10004 -0.026113886158100286 EDNKPEAI 8 Unmodified _EDNKPEAI_ 0 0 0 tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1 tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1 tr|U7T3D2|U7T3D2_FUSNUIon-translocatingoxidoreductasecomplexsubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfCPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2246398925781 2 458.224539 914.434526 -0.31577 -0.0001447 0.54094 0.00024787 0.22516 0.00010317 458.2247154695287 53.461 0.69398 50.577 50.283 50.977 -2.8837 38 19 2 0 0 0 0.27274 1 10135 10135 38.151 4.0487 1 7286200 9897 26395 6367 6371 10005 10005 -0.026113886158100286 EDNKTLVY 8 Unmodified _EDNKTLVY_ 0 0 0 REV__ENST00000490365.1_1_10:76744849-76785012:+|nuORF REV__ENST00000490365.1_1_10:76744849-76785012:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 328.0166015625 3 327.834435 980.481476 0.8081 0.00026492 -1.0129 -0.00033208 -0.20483 -6.7152E-05 327.83405786871265 25.034 0.44954 23.386 23.131 23.58 -1.6482 31 12 3 0 0 0 1.0243 1 4417 4417 3.9444 0 1 4595200 + 9898 17265 6368 6372 10006 10006 -0.009545290646656213 EDNKTLVY 8 Unmodified _EDNKTLVY_ 0 0 0 REV__ENST00000490365.1_1_10:76744849-76785012:+|nuORF REV__ENST00000490365.1_1_10:76744849-76785012:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 327.834435 980.481476 0.049645 1.6275E-05 -0.27139 -8.8972E-05 -0.22175 -7.2696E-05 327.83433020885144 24.919 0.51355 23.385 23.129 23.643 -1.5342 -0.00050407 0.00039808 NaN 3.9444 38 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3909000 + 9899 17265 6368 6372 -0.009545290646656213 EDNMLNSMYQ 10 Unmodified _EDNMLNSMYQ_ 0 0 0 ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38 ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38 ENSG00000140829|ENST00000268482|DHX38 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7661743164062 2 622.749738 1243.48492 NaN NaN NaN NaN NaN NaN NaN 66.139 1 63.092 62.592 63.592 -3.047 0 0 0 0.22588 1 12809 12809 6.7232 0 1 9900 4326;12358 6369 6373 10007 10007 -0.1270797034460429 EDNPVDEY 8 Unmodified _EDNPVDEY_ 0 0 0 ENST00000442031.1_1_X:51665090-51665543:-|nuORF;ENSG00000205339|ENST00000379719|IPO7 ENST00000442031.1_1_X:51665090-51665543:-|nuORF;ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2546691894531 2 490.695812 979.377071 0.42249 0.00020732 -1.7982 -0.00088239 -1.3757 -0.00067507 490.69687243049043 49.561 0.17974 49.561 49.44 49.62 0 7 4 2 0 0 0 1.0095 1 9371 9371 2.5775 0 1 339580 9901 9897;7642 6370 6374 10008 10008 -0.11344275612043475 EDNSFEQF 8 Unmodified _EDNSFEQF_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F394S|1|0.36|ENSG00000128641|chr2:191370288-191370288|T/C|missense_variant;ENSG00000166866|ENST00000300119|MYO1A MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENSG00000166866|ENST00000300119|MYO1A MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.3870544433594 2 508.203804 1014.39306 0.20221 0.00010277 -0.39849 -0.00020251 -0.19627 -9.9746E-05 508.2035219464667 140.4 0.84183 140.4 139.95 140.79 0 41 23 2 0 0 0 1.0254 1 27867 27867 0.6015 0 1 7428500 9902 3536;5757 6371 6375 10009 10009 -0.11356569375129766 EDNSFEQF 8 Unmodified _EDNSFEQF_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F394S|1|0.36|ENSG00000128641|chr2:191370288-191370288|T/C|missense_variant;ENSG00000166866|ENST00000300119|MYO1A MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENSG00000166866|ENST00000300119|MYO1A MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 508.203804 1014.39306 -0.01249 -6.3474E-06 -0.35935 -0.00018262 -0.37184 -0.00018897 508.2034873289626 145.37 0.97835 140.7 140.3 141.28 -4.6694 0.14609 8.7414E-05 NaN 0.6015 59 27 3 NaN NaN NaN NaN 0 NaN NaN 0 8366200 9903 3536;5757 6371 6375 -0.11356569375129766 EDNSFEQF 8 Unmodified _EDNSFEQF_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F394S|1|0.36|ENSG00000128641|chr2:191370288-191370288|T/C|missense_variant;ENSG00000166866|ENST00000300119|MYO1A MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENSG00000166866|ENST00000300119|MYO1A MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 508.203804 1014.39306 -0.26747 -0.00013593 -0.35865 -0.00018227 -0.62612 -0.0003182 508.2036456388928 145.68 0.93304 140.57 140.14 141.07 -5.1108 0.0088253 8.8122E-05 NaN 0.6015 54 26 3 NaN NaN NaN NaN 0 NaN NaN 0 6163500 9904 3536;5757 6371 6375 -0.11356569375129766 EDNSFEQF 8 Unmodified _EDNSFEQF_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.F394S|1|0.36|ENSG00000128641|chr2:191370288-191370288|T/C|missense_variant;ENSG00000166866|ENST00000300119|MYO1A MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENSG00000166866|ENST00000300119|MYO1A MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 508.203804 1014.39306 0.23779 0.00012084 -0.64382 -0.00032719 -0.40603 -0.00020635 508.2034546040994 145.51 1.0435 140.56 140.14 141.18 -4.9445 0.0044901 -0.00020172 NaN 0.6015 56 29 3 NaN NaN NaN NaN 0 NaN NaN 0 6125800 9905 3536;5757 6371 6375 -0.11356569375129766 EDPDEGIKY 9 Unmodified _EDPDEGIKY_ 0 0 0 EFCAB1|p.D148Y|1|0.26|ENSG00000034239|chr8:48729749-48729749|C/A|missense_variant EFCAB1|p.D148Y|1|0.26|ENSG00000034239|chr8:48729749-48729749|C/A|missense_variant EFCAB1|p.D148Y|1|0.26|ENSG00000034239|chr8:48729749-48729749|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2706298828125 2 533.240386 1064.46622 0.37117 0.00019792 0.76343 0.00040709 1.1346 0.00060502 533.2405900070803 44.095 0.40557 44.095 43.917 44.323 0 15 11 2 0 0 0 0.096847 1 8267 8267 52.268 29.12 1 1583400 9906 919 6372 6376 10010 10010 -0.06343440652517529 EDPDEGIKY 9 Unmodified _EDPDEGIKY_ 0 0 0 EFCAB1|p.D148Y|1|0.26|ENSG00000034239|chr8:48729749-48729749|C/A|missense_variant EFCAB1|p.D148Y|1|0.26|ENSG00000034239|chr8:48729749-48729749|C/A|missense_variant EFCAB1|p.D148Y|1|0.26|ENSG00000034239|chr8:48729749-48729749|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2696533203125 2 533.240386 1064.46622 0.024041 1.282E-05 1.4158 0.00075494 1.4398 0.00076776 533.2406919389365 47.177 0.52093 44.308 44.046 44.567 -2.869 22 14 2 0 0 0 0.096847 1 8869 8869 52.268 18.166 1 1235600 9907 919 6372 6376 10011 10011 -0.06343440652517529 EDPDEGIKY 9 Unmodified _EDPDEGIKY_ 0 0 0 EFCAB1|p.D148Y|1|0.26|ENSG00000034239|chr8:48729749-48729749|C/A|missense_variant EFCAB1|p.D148Y|1|0.26|ENSG00000034239|chr8:48729749-48729749|C/A|missense_variant EFCAB1|p.D148Y|1|0.26|ENSG00000034239|chr8:48729749-48729749|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2701416015625 2 533.240386 1064.46622 0.37854 0.00020185 0.19138 0.00010205 0.56991 0.0003039 533.2401410253774 47.198 0.54588 44.256 44.033 44.579 -2.9421 20 15 2 0 0 0 0.07121 1 8580 8580 68.081 42.681 1 1923800 9908 919 6372 6376 10012 10012 -0.06343440652517529 EDPDEGIKY 9 Unmodified _EDPDEGIKY_ 0 0 0 EFCAB1|p.D148Y|1|0.26|ENSG00000034239|chr8:48729749-48729749|C/A|missense_variant EFCAB1|p.D148Y|1|0.26|ENSG00000034239|chr8:48729749-48729749|C/A|missense_variant EFCAB1|p.D148Y|1|0.26|ENSG00000034239|chr8:48729749-48729749|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2706298828125 2 533.240386 1064.46622 -0.039102 -2.0851E-05 1.1966 0.0006381 1.1575 0.00061724 533.2408618106949 47.217 0.61968 44.268 43.948 44.568 -2.9499 21 17 2 0 0 0 0.14967 1 8605 8605 49.933 32.991 1 1461200 9909 919 6372 6376 10013 10013 -0.06343440652517529 EDPECQDAE 9 Unmodified _EDPECQDAE_ 0 0 0 ENSG00000099625|ENST00000650044|CBARP;nc|ENSG00000099625|Q8N350-4|CBARP ENSG00000099625|ENST00000650044|CBARP ENSG00000099625|ENST00000650044|CBARP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.7896423339844 3 345.790566 1034.34987 NaN NaN NaN NaN NaN NaN NaN 60.673 1 60.673 60.173 61.173 0 0 0 0 0.19657 1 11637 11637 0.073264 0 1 9910 1897 6373 6377 10014 10014 -0.16593127214741799 EDPELSLI 8 Unmodified _EDPELSLI_ 0 0 0 REV__ENST00000563636.5_1_16:89961526-89967207:+|nuORF REV__ENST00000563636.5_1_16:89961526-89967207:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2380065917969 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 77.898 1 74.435 73.935 74.935 -3.4633 0 0 0 0.21323 1 15209 15209 14.582 0 1 + 9911 16609 6374 6378 10015 10015 -0.0009733381323258072 EDPELSLI 8 Unmodified _EDPELSLI_ 0 0 0 REV__ENST00000563636.5_1_16:89961526-89967207:+|nuORF REV__ENST00000563636.5_1_16:89961526-89967207:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2384338378906 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 77.941 1 74.175 73.675 74.675 -3.7664 0 0 0 0.21323 1 14772 14772 14.582 0 1 + 9912 16609 6374 6378 10016 10016 -0.0009733381323258072 EDPGTMLSI 9 Unmodified _EDPGTMLSI_ 0 0 0 ENST00000261180.8_1_12:72771793-72771838:+|nuORF ENST00000261180.8_1_12:72771793-72771838:+|nuORF ENST00000261180.8_1_12:72771793-72771838:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7756042480469 2 481.7286 961.442648 NaN NaN NaN NaN NaN NaN NaN 101.41 1 97.1 96.6 97.6 -4.3146 0 0 0 0.22251 1 19408 19408 16.942 1.0951 1 9913 8290 6375 6379 10017 10017 -0.039615776906771316 EDPLELSA 8 Unmodified _EDPLELSA_ 0 0 0 SLC9A9|p.V406Cfs*92|1|0.4|ENSG00000181804|chr3:143493752-143493753|-/A|frameshift_variant SLC9A9|p.V406Cfs*92|1|0.4|ENSG00000181804|chr3:143493752-143493753|-/A|frameshift_variant SLC9A9|p.V406Cfs*92|1|0.4|ENSG00000181804|chr3:143493752-143493753|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2145080566406 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 144.15 1 139.09 138.59 139.59 -5.0671 0 0 0 0.21486 1 27801 27801 8.5933 0 1 9914 25693 6376 6380 10018 10018 -0.028581933643863522 EDPLPLLEV 9 Unmodified _EDPLPLLEV_ 0 0 0 ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant;ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant;ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.V722Sfs*7|1|0.25|ENSG00000188994|chr6:87255786-87255787|-/A|frameshift_variant;ZNF292|p.L151*|1|0.19|ENSG00000188994|chr6:87218640-87218640|T/-|frameshift_variant ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.19873046875 3 342.190219 1023.54883 NaN NaN NaN NaN NaN NaN NaN 109.59 1 105.41 104.91 105.91 -4.1826 0 0 0 0.19661 1 21092 21092 0.0033805 0 1 9915 7211 6377 6381 10019 10019 0.0379950114629537 EDPPHLQGFL 10 Unmodified _EDPPHLQGFL_ 0 0 0 REV__ENSG00000275700|ENST00000619387|AATF REV__ENSG00000275700|ENST00000619387|AATF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3140258789062 2 576.787838 1151.56112 NaN NaN NaN NaN NaN NaN NaN 102.83 1 98.646 98.146 99.146 -4.1861 0 0 0 0.22576 1 20216 20216 14.838 3.198 1 + 9916 19936 6378 6382 10020 10020 -0.008594623906674315 EDPREREY 8 Unmodified _EDPREREY_ 0 0 0 PPP2R5B|p.E341Dfs*3|1|0.26|ENSG00000068971|chr11:64931774-64931775|-/TTCTT|frameshift_variant;nc|ENSG00000068971|Q15173-2|PPP2R5B;ENSG00000068971|ENST00000164133|PPP2R5B PPP2R5B|p.E341Dfs*3|1|0.26|ENSG00000068971|chr11:64931774-64931775|-/TTCTT|frameshift_variant PPP2R5B|p.E341Dfs*3|1|0.26|ENSG00000068971|chr11:64931774-64931775|-/TTCTT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7713623046875 2 547.249077 1092.4836 0.23317 0.0001276 0.7785 0.00042603 1.0117 0.00055364 547.2493504351216 97.161 0.62232 93.064 92.805 93.427 -4.0978 27 17 2 0 0 0 0.97173 1 19067 19067 18.135 7.3111 1 1858800 9917 1412 6379 6383 10021 10021 -0.058941003268500936 EDPRQMGP 8 Unmodified _EDPRQMGP_ 0 0 0 ENST00000495272.5_1_1:95705378-95709907:+|nuORF ENST00000495272.5_1_1:95705378-95709907:+|nuORF ENST00000495272.5_1_1:95705378-95709907:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2511291503906 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 96.427 1 96.427 95.927 96.927 0 0 0 0 0.23025 1 18892 18892 0.25148 0.12861 1 9918 10565 6380 6384 10022 10022 -0.059801954278327685 EDPTVLEL 8 Unmodified _EDPTVLEL_ 0 0 0 ENSG00000005421|ENST00000222381|PON1 ENSG00000005421|ENST00000222381|PON1 ENSG00000005421|ENST00000222381|PON1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23797607421875 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 109.66 1 105.28 104.78 105.78 -4.3776 0 0 0 0.21486 1 21609 21609 9.3474 0 1 9919 990 6381 6385 10023 10023 -0.0009733381323258072 EDPVKIVR 8 Unmodified _EDPVKIVR_ 0 0 0 ENST00000493197.5_1_5:177656705-177658704:-|nuORF;ENST00000511716.1_1_5:177653644-177659518:-|nuORF;ENSG00000175309|ENST00000308158|PHYKPL ENST00000493197.5_1_5:177656705-177658704:-|nuORF ENST00000493197.5_1_5:177656705-177658704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.721923828125 2 478.282192 954.549831 NaN NaN NaN NaN NaN NaN NaN 121.08 1 121.08 120.58 121.58 0 0 0 0 0.21292 1 23865 23865 19.439 5.9311 1 9920 6400 6382 6386 10024 10024 0.07073760305854648 EDQEGAHEE 9 Unmodified _EDQEGAHEE_ 0 0 0 REV__FBXW7|p.T263Nfs*24|1|0.12|ENSG00000109670|chr4:152337875-152337876|-/T|frameshift_variant REV__FBXW7|p.T263Nfs*24|1|0.12|ENSG00000109670|chr4:152337875-152337876|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2732543945312 2 522.19925 1042.38395 NaN NaN NaN NaN NaN NaN NaN 55.158 1 52.275 51.775 52.775 -2.8837 0 0 0 0.23508 1 10548 10548 10.824 0.64053 1 + 9921 15168 6383 6387 10025 10025 -0.1355496273145036 EDQEGAHEE 9 Unmodified _EDQEGAHEE_ 0 0 0 REV__FBXW7|p.T263Nfs*24|1|0.12|ENSG00000109670|chr4:152337875-152337876|-/T|frameshift_variant REV__FBXW7|p.T263Nfs*24|1|0.12|ENSG00000109670|chr4:152337875-152337876|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2822875976562 2 522.19925 1042.38395 NaN NaN NaN NaN NaN NaN NaN 55.764 1 52.588 52.088 53.088 -3.1761 0 0 0 0.23508 1 10360 10360 10.824 0.64053 1 + 9922 15168 6383 6387 10026 10026 -0.1355496273145036 EDQEKMKEMFK 11 Unmodified _EDQEKMKEMFK_ 0 0 0 nc|ENSG00000141429|Q10472-2|GALNT1;ENSG00000141429|ENST00000269195|GALNT1 nc|ENSG00000141429|Q10472-2|GALNT1 nc|ENSG00000141429|Q10472-2|GALNT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7803649902344 3 481.559989 1441.65814 NaN NaN NaN NaN NaN NaN NaN 119.01 1 114.51 114.01 115.01 -4.502 0 0 0 0.23491 1 23468 23468 4.4062 0 1 9923 4361 6384 6388 10027 10027 -0.04502604288200018 EDQGNAAVDY 10 Unmodified _EDQGNAAVDY_ 0 0 0 REV__ENSG00000176746|ENST00000379034|MAGEB6 REV__ENSG00000176746|ENST00000379034|MAGEB6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.264892578125 2 541.225268 1080.43598 0.23123 0.00012515 1.2771 0.00069121 1.5084 0.00081636 541.2258822089659 78.841 0.80978 75.33 74.882 75.692 -3.5102 41 22 3 0 0 0 0.51199 1 15329 15329 24.021 3.5669 1 2977800 + 9924 18520 6385 6389 10028 10028 -0.10101799317703808 EDQILFNAH 9 Unmodified _EDQILFNAH_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7698974609375 2 543.764363 1085.51417 NaN NaN NaN NaN NaN NaN NaN 95.914 1 91.723 91.223 92.223 -4.1911 0 0 0 0.1761 1 18309 18309 26.884 1.4843 1 9925 3010 6386 6390 10029 10029 -0.025163219418118388 EDQKISGP 8 Unmodified _EDQKISGP_ 0 0 0 REV__ENSG00000198483|ENST00000355594|ANKRD35 REV__ENSG00000198483|ENST00000355594|ANKRD35 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2192687988281 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 45.501 1 42.66 42.16 43.16 -2.8409 0 0 0 0.21486 1 8571 8571 5.2307 0 1 + 9926 19416 6387 6391 10030 10030 -0.017353712702401936 EDQKRQIY 8 Unmodified _EDQKRQIY_ 0 0 0 nc|ENSG00000166833|Q8IVL1-11|NAV2 nc|ENSG00000166833|Q8IVL1-11|NAV2 nc|ENSG00000166833|Q8IVL1-11|NAV2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.206298828125 3 360.520851 1078.54072 -0.34941 -0.00012597 0.37646 0.00013572 0.027044 9.75E-06 360.5209522122639 43.378 0.49505 40.659 40.558 41.053 -2.7191 22 13 2 0 0 0 1.0265 1 8197 8197 1.6526 0 1 1591600 9927 12442 6388 6392 10031 10031 0.00459366949530704 EDQPYISK 8 Unmodified _EDQPYISK_ 0 0 0 ENST00000508037.1_1_5:111788403-111788643:-|nuORF ENST00000508037.1_1_5:111788403-111788643:-|nuORF ENST00000508037.1_1_5:111788403-111788643:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2547912597656 2 490.24019 978.465826 0.31601 0.00015492 -0.23756 -0.00011646 0.07845 3.8459E-05 490.24016129560977 93.561 0.63755 89.417 89.115 89.752 -4.1435 27 18 2 0 0 0 0.71876 1 17803 17803 11.64 0 1 1799400 9928 10706 6389 6393 10032 10032 -0.0242681558172535 EDQQGGREF 9 Unmodified _EDQQGGREF_ 0 0 0 ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1 ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENST00000446331.6_1_8:11660331-11696115:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2735595703125 2 533.233427 1064.4523 0.70602 0.00037647 -2.4811 -0.001323 -1.7751 -0.00094655 533.2315313085726 101.79 0.1064 97.472 97.4 97.507 -4.3208 4 2 2 0 0 0 0.79204 1 19468 19468 7.2892 2.5332 1 356360 9929 1596 6390 6394 10033 10033 -0.0773467336093745 EDQTTAETSL 10 Unmodified _EDQTTAETSL_ 0 0 0 REV__nc|ENSG00000138434|P28290-3|ITPRID2 REV__nc|ENSG00000138434|P28290-3|ITPRID2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.770263671875 2 547.746033 1093.47751 NaN NaN NaN NaN NaN NaN NaN 137.54 1 132.7 132.2 133.2 -4.84 0 0 0 0.22588 1 26500 26500 10.074 0 1 + 9930 16461 6391 6395 10034 10034 -0.06548663349030903 EDQVILRLR 9 Unmodified _EDQVILRLR_ 0 0 0 nc|ENSG00000103067|Q9H6T0|ESRP2;ENSG00000103067|ENST00000473183|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF nc|ENSG00000103067|Q9H6T0|ESRP2 nc|ENSG00000103067|Q9H6T0|ESRP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2099914550781 3 381.227779 1140.66151 NaN NaN NaN NaN NaN NaN NaN 115.72 1 111.37 110.87 111.87 -4.3585 0 0 0 0.19623 1 22278 22278 0.0033805 0 1 9931 2163 6392 6396 10035 10035 0.09680194662973918 EDQVQAIAA 9 Unmodified _EDQVQAIAA_ 0 0 0 ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36 ENSG00000163482|ENST00000295709|STK36 ENSG00000163482|ENST00000295709|STK36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 472.7908630371094 2 472.737814 943.461075 -0.061552 -2.9098E-05 0.090702 4.2878E-05 0.02915 1.378E-05 472.7378308838603 76.649 1.7998 73.234 72.679 74.479 -3.4151 158 50 4 0 0 0 0.41081 1 14861 14861 1.6919 0.23681 1 58273000 9932 5432 6393 6397 10036 10036 -0.01291699724481532 EDQVQAIAA 9 Unmodified _EDQVQAIAA_ 0 0 0 ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36 ENSG00000163482|ENST00000295709|STK36 ENSG00000163482|ENST00000295709|STK36 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 472.737814 943.461075 -0.057219 -2.7049E-05 0.043043 2.0348E-05 -0.014175 -6.7012E-06 472.73780523697263 73.465 1.6473 73.465 72.886 74.533 0 0.093526 1.3818E-05 NaN 1.6919 137 46 4 NaN NaN NaN NaN 0 NaN NaN 0 28517000 9933 5432 6393 6397 -0.01291699724481532 EDQVQAIAA 9 Unmodified _EDQVQAIAA_ 0 0 0 ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36 ENSG00000163482|ENST00000295709|STK36 ENSG00000163482|ENST00000295709|STK36 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 472.737814 943.461075 0.0010734 5.0746E-07 0.027984 1.3229E-05 0.029058 1.3737E-05 472.7377824298039 77.185 2.1737 73.419 72.778 74.951 -3.7664 0.047335 -4.2004E-07 NaN 1.6919 160 61 4 NaN NaN NaN NaN 0 NaN NaN 0 44581000 9934 5432 6393 6397 -0.01291699724481532 EDQVQAIAA 9 Unmodified _EDQVQAIAA_ 0 0 0 ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36 ENSG00000163482|ENST00000295709|STK36 ENSG00000163482|ENST00000295709|STK36 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 472.737814 943.461075 0.11775 5.5665E-05 -0.099034 -4.6817E-05 0.018716 8.848E-06 472.7377233906745 77.026 2.115 73.367 72.826 74.941 -3.6588 -0.0039397 -0.00012051 NaN 1.6919 170 59 4 NaN NaN NaN NaN 0 NaN NaN 0 42188000 9935 5432 6393 6397 -0.01291699724481532 EDQVVKVL 8 Unmodified _EDQVVKVL_ 0 0 0 ILVBL|p.D603N|1|0.4|ENSG00000105135|chr19:15115344-15115344|C/T|missense_variant;ENSG00000105135|ENST00000263383|ILVBL ILVBL|p.D603N|1|0.4|ENSG00000105135|chr19:15115344-15115344|C/T|missense_variant ILVBL|p.D603N|1|0.4|ENSG00000105135|chr19:15115344-15115344|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24835205078125 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 95.215 1 95.215 94.715 95.715 0 0 0 0 0.21486 1 18652 18652 10.183 0 1 9936 2280 6394 6398 10037 10037 0.05582651694669494 EDRDDHTRCN 10 Unmodified _EDRDDHTRCN_ 0 0 0 ENSG00000135720|ENST00000258198|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7532958984375 2 630.754732 1259.49491 NaN NaN NaN NaN NaN NaN NaN 27.174 1 25.392 24.892 25.892 -1.7821 0 0 0 0.22588 1 4822 4822 1.4819 0.28856 1 9937 3946 6395 6399 10038 10038 -0.12445646295009283 EDRDDHTRCN 10 Unmodified _EDRDDHTRCN_ 0 0 0 ENSG00000135720|ENST00000258198|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7550048828125 2 630.754732 1259.49491 NaN NaN NaN NaN NaN NaN NaN 152.14 1 146.96 146.46 147.46 -5.1759 0 0 0 2.8426 1 29486 29486 0.043787 0.017581 1 9938 3946 6395 6399 10039 10039 -0.12445646295009283 EDRDVNDP 8 Unmodified _EDRDVNDP_ 0 0 0 ENSG00000109586|ENST00000265000|GALNT7;GALNT7|p.L158Wfs*25|1|0.21|ENSG00000109586|chr4:173248323-173248323|T/-|frameshift_variant ENSG00000109586|ENST00000265000|GALNT7 ENSG00000109586|ENST00000265000|GALNT7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 480.2084045410156 2 480.206878 958.399203 NaN NaN NaN NaN NaN NaN NaN 68.39 1 65.211 64.711 65.711 -3.1796 0 0 0 0.20896 1 13282 13282 18.135 3.2967 1 9939 2533 6396 6400 10040 10040 -0.08166051143621189 EDRFEDDRY 9 Unmodified _EDRFEDDRY_ 0 0 0 nc|ENSG00000073146|Q9BXT6-2|MOV10L1;nc|ENSG00000073146|Q9BXT6-5|MOV10L1;ENSG00000073146|ENST00000262794|MOV10L1 nc|ENSG00000073146|Q9BXT6-2|MOV10L1 nc|ENSG00000073146|Q9BXT6-2|MOV10L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7779541015625 2 622.762549 1243.51054 NaN NaN NaN NaN NaN NaN NaN 63.807 1 60.392 59.892 60.892 -3.4158 0 0 0 0.23508 1 11928 11928 7.2892 0.56607 1 9940 1482 6397 6401 10041 10041 -0.10147036506327822 EDRFEDDRY 9 Unmodified _EDRFEDDRY_ 0 0 0 nc|ENSG00000073146|Q9BXT6-2|MOV10L1;nc|ENSG00000073146|Q9BXT6-5|MOV10L1;ENSG00000073146|ENST00000262794|MOV10L1 nc|ENSG00000073146|Q9BXT6-2|MOV10L1 nc|ENSG00000073146|Q9BXT6-2|MOV10L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7645263671875 2 622.762549 1243.51054 NaN NaN NaN NaN NaN NaN NaN 123.58 1 118.99 118.49 119.49 -4.5926 0 0 0 0.23508 1 23787 23787 4.756 0 1 9941 1482 6397 6401 10042 10042 -0.10147036506327822 EDRFPRFE 8 Unmodified _EDRFPRFE_ 0 0 0 REV__ENSG00000058729|ENST00000283109|RIOK2 REV__ENSG00000058729|ENST00000283109|RIOK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7840576171875 2 548.26453 1094.51451 -0.22414 -0.00012289 -2.281 -0.0012506 -2.5052 -0.0013735 548.2642730501826 109.84 0.37675 105.47 105.21 105.58 -4.3776 9 6 2 0 0 0 0.97966 1 21631 21631 16.942 6.8684 1 950660 + 9942 14131 6398 6402 10043 10043 -0.028969022219598628 EDRGRTLGHY 10 Unmodified _EDRGRTLGHY_ 0 0 0 nc|ENSG00000185436|Q8IU57-2|IFNLR1;ENSG00000185436|ENST00000327535|IFNLR1 nc|ENSG00000185436|Q8IU57-2|IFNLR1 nc|ENSG00000185436|Q8IU57-2|IFNLR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2799072265625 2 602.296893 1202.57923 NaN NaN NaN NaN NaN NaN NaN 107.27 1 102.85 102.35 103.35 -4.4121 0 0 0 0.22588 1 20577 20577 7.2892 0.56607 1 9943 6990 6399 6403 10044 10044 -0.013953274159575813 EDRKQLNY 8 Unmodified _EDRKQLNY_ 0 0 0 ENST00000503051.1_1_4:53527145-53527238:+|nuORF ENST00000503051.1_1_4:53527145-53527238:+|nuORF ENST00000503051.1_1_4:53527145-53527238:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2715454101562 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 59.28 1 56.061 55.561 56.561 -3.2192 0 0 0 0.21486 1 11070 11070 10.824 0.75 1 9944 10639 6400 6404 10045 10045 -0.004609195675357114 EDRLLTKGF 9 Unmodified _EDRLLTKGF_ 0 0 0 REV__PDE6A|p.A811Gfs*10|1|0.37|ENSG00000132915|chr5:149863193-149863193|G/-|frameshift_variant REV__PDE6A|p.A811Gfs*10|1|0.37|ENSG00000132915|chr5:149863193-149863193|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 109.13 1 104.95 104.45 105.45 -4.1826 0 0 0 0.23508 1 21001 21001 5.2969 0.39987 1 + 9945 16142 6401 6405 10046 10046 0.046171279889904326 EDRMIRFV 8 Unmodified _EDRMIRFV_ 0 0 0 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.282470703125 2 533.279126 1064.5437 NaN NaN NaN NaN NaN NaN NaN 147.27 1 142.58 142.08 143.08 -4.6868 0 0 0 0.21486 1 29215 29215 9.3474 3.587 1 9946 4585 6402 6406 10047 10047 0.014009188026875563 EDRNQIEY 8 Unmodified _EDRNQIEY_ 0 0 0 REV__OTUD4|p.A469T|1|0.17|ENSG00000164164|chr4:145146284-145146284|C/T|missense_variant REV__OTUD4|p.A469T|1|0.17|ENSG00000164164|chr4:145146284-145146284|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2625732421875 2 533.743628 1065.4727 0.65656 0.00035043 2.7903 0.0014893 3.4469 0.0018398 533.745584048575 103.33 0.84811 99.294 98.906 99.754 -4.0353 18 12 2 0 0 0 0.70613 1 19892 19892 13.508 0.97634 1 1227600 + 9947 17654 6403 6407 10048 10048 -0.0574150270113023 EDRPDDKF 8 Unmodified _EDRPDDKF_ 0 0 0 REV__ENSG00000186660|ENST00000316059|ZFP91 REV__ENSG00000186660|ENST00000316059|ZFP91 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.17791748046875 3 341.157689 1020.45124 NaN NaN NaN NaN NaN NaN NaN 67.437 1 64.11 63.61 64.61 -3.3268 0 0 0 0.21486 1 12715 12715 10.824 2.6684 1 + 9948 19046 6404 6408 10049 10049 -0.05816887729861264 EDRPVVFTHL 10 Unmodified _EDRPVVFTHL_ 0 0 0 nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82 nc|nan|Q6P1X6-2|C8orf82 nc|nan|Q6P1X6-2|C8orf82 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3300476074219 3 404.8839 1211.62987 -0.19065 -7.719E-05 -3.1789 -0.0012871 -3.3695 -0.0013643 404.88280636847384 45.202 0.18264 42.412 42.272 42.455 -2.79 6 4 2 0 0 0 0.91149 1 8513 8513 0.13989 0 1 212180 9949 7698 6405 6409 10050 10050 0.032522019090492904 EDRRKLLAIF 10 Unmodified _EDRRKLLAIF_ 0 0 0 ENST00000260665.11_1_2:44175627-44176776:-|nuORF ENST00000260665.11_1_2:44175627-44176776:-|nuORF ENST00000260665.11_1_2:44175627-44176776:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7489624023438 2 630.874779 1259.73501 NaN NaN NaN NaN NaN NaN NaN 98.645 1 94.512 94.012 95.012 -4.1326 0 0 0 0.22588 1 19369 19369 7.2892 1.0834 1 9950 8285 6406 6410 10051 10051 0.11552743105448826 EDRRRLALI 9 Unmodified _EDRRRLALI_ 0 0 0 nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-2|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-5|CASP5 nc|ENSG00000137757|P51878-3|CASP5 nc|ENSG00000137757|P51878-3|CASP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.20892333984375 3 381.231523 1140.67274 NaN NaN NaN NaN NaN NaN NaN 33.665 1 33.665 33.165 34.165 0 0 0 0 0.19623 1 6149 6149 0.0033805 0 1 9951 4103 6407 6411 10052 10052 0.10803016757108708 EDRRWIAT 8 Unmodified _EDRRWIAT_ 0 0 0 ENSG00000158023|ENST00000288912|CFAP251;nc|ENSG00000158023|Q8TBY9-2|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6775512695312 2 523.772522 1045.53049 -0.54412 -0.00028499 -0.85916 -0.00045001 -1.4033 -0.000735 523.7722347080082 47.233 0.37738 44.291 44.1 44.478 -2.9421 16 10 2 0 0 0 1.0147 1 8646 8646 5.2307 0 1 1382600 9952 5147 6408 6412 10053 10053 0.009548040149411463 EDRSSRLG 8 Unmodified _EDRSSRLG_ 0 0 0 ENST00000525941.1_1_11:784028-784256:+|nuORF ENST00000525941.1_1_11:784028-784256:+|nuORF ENST00000525941.1_1_11:784028-784256:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2330322265625 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 51.187 1 48.136 47.636 48.636 -3.0517 0 0 0 0.21486 1 9426 9426 8.5933 0.68312 1 9953 10905 6409 6413 10054 10054 -0.010580482901332289 EDRTYCPY 8 Unmodified _EDRTYCPY_ 0 0 0 REV__ENST00000466707.1_1_9:139912423-139912525:-|nuORF REV__ENST00000466707.1_1_9:139912423-139912525:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6835327148438 2 523.716024 1045.4175 NaN NaN NaN NaN NaN NaN NaN 74.863 1 71.186 70.686 71.686 -3.6764 0 0 0 0.21486 1 14153 14153 5.7604 0 1 + 9954 21972 6410 6414 10055 10055 -0.10339632493264617 EDRVALLAA 9 Unmodified _EDRVALLAA_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000016285 REV__CON__ENSEMBL:ENSBTAP00000016285 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7236633300781 2 479.271824 956.529095 -0.38011 -0.00018218 0.79653 0.00038175 0.41642 0.00019958 479.27220813914784 66.007 0.51324 66.007 65.692 66.205 0 24 14 2 0 0 0 0.62921 1 12705 12705 18.146 1.0335 1 7333200 + + 9955 13506 6411 6415 10056 10056 0.04909169926179402 EDRYLTLR 8 Unmodified _EDRYLTLR_ 0 0 0 REV__nc|ENSG00000107186|O75970-5|MPDZ REV__nc|ENSG00000107186|O75970-5|MPDZ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2621459960938 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 161.14 1 155.89 155.39 156.39 -5.2526 0 0 0 0.21404 1 31270 31270 13.906 3.8321 1 + 9956 15077 6412 6416 10057 10057 0.031759573291765264 EDSAVPTPD 9 Unmodified _EDSAVPTPD_ 0 0 0 ENST00000526768.5_1_11:1475616-1478267:+|nuORF ENST00000526768.5_1_11:1475616-1478267:+|nuORF ENST00000526768.5_1_11:1475616-1478267:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.241943359375 2 465.70618 929.397806 -0.18193 -8.4728E-05 -3.3797 -0.001574 -3.5617 -0.0016587 465.7037849192063 59.452 0.53813 59.452 59.074 59.612 0 20 14 2 0 0 0 0.80521 1 11410 11410 15.847 0 1 609960 9957 10919 6413 6417 10058 10058 -0.06971685232383606 EDSCSERMS 9 Unmodified _EDSCSERMS_ 0 0 0 ENST00000569150.1_1_16:25251139-25264321:-|nuORF;ENSG00000155592|ENST00000328086|ZKSCAN2 ENST00000569150.1_1_16:25251139-25264321:-|nuORF ENST00000569150.1_1_16:25251139-25264321:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2774658203125 2 522.192056 1042.36956 NaN NaN NaN NaN NaN NaN NaN 76.272 1 72.638 72.138 73.138 -3.6337 0 0 0 0.23508 1 14518 14518 7.2892 0.56607 1 9958 5051 6414 6418 10059 10059 -0.14993074475614776 EDSDDECDDGD 11 Unmodified _EDSDDECDDGD_ 0 0 0 REV__LRP4|p.N94del|1|0.47|ENSG00000134569|chr11:46900296-46900298|GTT/-|inframe_deletion REV__LRP4|p.N94del|1|0.47|ENSG00000134569|chr11:46900296-46900298|GTT/-|inframe_deletion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.4599609375 3 405.447305 1213.32009 NaN NaN NaN NaN NaN NaN NaN 38.46 1 38.46 37.96 38.96 0 0 0 0 0.22632 1 7133 7133 0.094841 0.094841 1 + 9959 23816 6415 6419 10060 10060 -0.27804155741409886 EDSEALMK 8 Unmodified _EDSEALMK_ 0 0 0 REV__OSBP|p.I255Nfs*16|1|0.03|ENSG00000110048|chr11:59608542-59608543|-/AACATAAT|frameshift_variant REV__OSBP|p.I255Nfs*16|1|0.03|ENSG00000110048|chr11:59608542-59608543|-/AACATAAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.54461669921875 2 461.71295 921.411348 NaN NaN NaN NaN NaN NaN NaN 73.973 1 73.973 73.473 74.473 0 0 0 0 0.21486 1 14356 14356 8.5933 0.68312 1 + 9960 15187 6416 6420 10061 10061 -0.05250150724782543 EDSEEENDD 9 Unmodified _EDSEEENDD_ 0 0 0 REV__ENST00000475957.1_1_9:20363472-20620706:-|nuORF REV__ENST00000475957.1_1_9:20363472-20620706:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.280517578125 2 541.175637 1080.33672 NaN NaN NaN NaN NaN NaN NaN 41.835 1 41.835 41.335 42.335 0 0 0 0 0.23508 1 7812 7812 7.2892 0 1 + 9961 18255 6417 6421 10062 10062 -0.20023286793116313 EDSEGELLME 10 Unmodified _EDSEGELLME_ 0 0 0 REV__MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant REV__MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3359985351562 2 576.242269 1150.46998 NaN NaN NaN NaN NaN NaN NaN 54.052 1 54.052 53.552 54.552 0 0 0 0 0.21574 1 10304 10304 25.399 4.9457 1 + 9962 14126 6418 6422 10063 10063 -0.09923138940962417 EDSFFRQRM 9 Unmodified _EDSFFRQRM_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-2|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.31134033203125 3 405.857357 1214.55024 -0.031679 -1.2857E-05 -0.90375 -0.00036679 -0.93543 -0.00037965 405.85689870726014 32.661 0.45624 30.513 30.245 30.701 -2.1483 20 12 2 0 0 0 0.8799 1 5661 5661 4.897 3.6822 1 597830 9963 1465 6419 6423 10064 10064 -0.04845188036597392 EDSFFRQRM 9 Unmodified _EDSFFRQRM_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-2|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 405.857357 1214.55024 0.027806 1.1285E-05 -1.233 -0.0005004 -1.2051 -0.00048912 405.85677948344556 30.376 0.39203 30.376 30.199 30.591 0 -0.08677 -0.00036941 NaN 4.897 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1268600 9964 1465 6419 6423 -0.04845188036597392 EDSFFRQRM 9 Unmodified _EDSFFRQRM_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-2|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 405.857357 1214.55024 0.23577 9.569E-05 -0.95402 -0.0003872 -0.71825 -0.00029151 405.85678719119784 32.575 0.4201 30.446 30.22 30.64 -2.129 -0.01666 -2.979E-05 NaN 4.897 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 877850 9965 1465 6419 6423 -0.04845188036597392 EDSGISFKAK 10 Unmodified _EDSGISFKAK_ 0 0 0 REV__ENSG00000114923|ENST00000358055|SLC4A3 REV__ENSG00000114923|ENST00000358055|SLC4A3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2649536132812 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 165.75 1 160.77 160.27 161.27 -4.9811 0 0 0 0.22588 1 32425 32425 10.8 1.4164 1 + 9966 15393 6420 6424 10065 10065 0.008088313724329055 EDSIVRKLML 10 Unmodified _EDSIVRKLML_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5;CUL5|p.N565Kfs*3|1|0.32|ENSG00000166266|chr11:108094930-108094931|-/A|frameshift_variant;CUL5|p.N565Ifs*18|1|0.28|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2868041992188 2 602.341923 1202.66929 NaN NaN NaN NaN NaN NaN NaN 153.67 1 148.4 147.9 148.9 -5.2669 0 0 0 0.22588 1 29789 29789 6.2058 0 1 9967 5710 6421 6425 10066 10066 0.07606585868256843 EDSNSPDSI 9 Unmodified _EDSNSPDSI_ 0 0 0 KMT2D|p.D4700N|1|0.25|ENSG00000167548|chr12:49029214-49029214|C/T|missense_variant KMT2D|p.D4700N|1|0.25|ENSG00000167548|chr12:49029214-49029214|C/T|missense_variant KMT2D|p.D4700N|1|0.25|ENSG00000167548|chr12:49029214-49029214|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7697448730469 2 482.198719 962.382884 NaN NaN NaN NaN NaN NaN NaN 148.41 1 143.26 142.76 143.76 -5.1557 0 0 0 0.23508 1 28733 28733 10.824 1.4765 1 9968 12011 6422 6426 10067 10067 -0.09981177100371497 EDSPNILVVT 10 Unmodified _EDSPNILVVT_ 0 0 0 REV__ENSG00000131711|ENST00000296755|MAP1B REV__ENSG00000131711|ENST00000296755|MAP1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7894287109375 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 75.891 1 72.169 71.669 72.669 -3.7227 0 0 0 2.8426 1 14360 14360 0.043787 0 1 + 9969 16086 6423 6427 10068 10068 0.021096981696246075 EDSPPLEM 8 Unmodified _EDSPPLEM_ 0 0 0 nc|ENSG00000055957|P19827-3|ITIH1;nc|ENSG00000055957|P19827-2|ITIH1;ENSG00000055957|ENST00000273283|ITIH1 nc|ENSG00000055957|P19827-3|ITIH1 nc|ENSG00000055957|P19827-3|ITIH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2442932128906 2 459.199676 916.384799 0.11712 5.378E-05 0.92995 0.00042703 1.0471 0.00048081 459.20006301193854 127.98 1.1964 123.16 122.75 123.95 -4.817 84 33 3 0 0 0 0.73426 1 24636 24636 9.3474 0 1 29682000 9970 1276 6424 6428 10069 10069 -0.07673839616109035 EDSSEEDSDEC 11 Unmodified _EDSSEEDSDEC_ 0 0 0 nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7660522460938 2 622.690794 1243.36704 NaN NaN NaN NaN NaN NaN NaN 136.94 1 136.94 136.44 137.44 0 0 0 0 0.23698 1 27144 27144 1.3295 0 1 9971 5873 6425 6429 10070 10070 -0.24491296190217327 EDSSEESSEVY 11 Unmodified _EDSSEESSEVY_ 0 0 0 REV__ENSG00000068985|ENST00000376150|PAGE1 REV__ENSG00000068985|ENST00000376150|PAGE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7711181640625 2 630.741145 1259.46774 0.44756 0.0002823 -3.1275 -0.0019727 -2.68 -0.0016904 631.2403599631918 93.752 0.47714 89.609 89.448 89.925 -4.1435 22 13 2 0 0 0 0.69278 1 17884 17884 12.241 2.1667 1 2273700 + 9972 14236 6426 6430 10071 10071 -0.15161896145059472 EDSSEESSEVY 11 Unmodified _EDSSEESSEVY_ 0 0 0 REV__ENSG00000068985|ENST00000376150|PAGE1 REV__ENSG00000068985|ENST00000376150|PAGE1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 630.741145 1259.46774 0.95314 0.00060118 -3.8665 -0.0024387 -2.9133 -0.0018376 631.2398610378184 93.766 0.51437 89.775 89.487 90.001 -3.9907 0.10164 -9.0348E-05 NaN 12.241 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1739300 + 9973 14236 6426 6430 -0.15161896145059472 EDSSEIGCIK 10 Unmodified _EDSSEIGCIK_ 0 0 0 REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1 REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2637939453125 2 540.747521 1079.48049 0.38595 0.0002087 -0.56886 -0.00030761 -0.1829 -9.8904E-05 540.7472978584436 65.312 0.23613 62.029 61.928 62.164 -3.2832 10 6 2 0 0 0 0.48196 1 12275 12275 0.26539 0 1 1406300 + 9974 25162 6427 6431 10072 10072 -0.05607111495896788 EDSSINCLY 9 Unmodified _EDSSINCLY_ 0 0 0 REV__nc|ENSG00000114455|Q9UM44-2|HHLA2 REV__nc|ENSG00000114455|Q9UM44-2|HHLA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2697143554688 2 522.221139 1042.42773 NaN NaN NaN NaN NaN NaN NaN 118.24 1 113.74 113.24 114.24 -4.502 0 0 0 0.23277 1 23309 23309 13.906 0.39817 1 + 9975 15376 6428 6432 10073 10073 -0.09179069558672381 EDSSMSGYLY 10 Unmodified _EDSSMSGYLY_ 0 0 0 ENST00000451107.3_1_12:95475298-95611245:-|nuORF;ENSG00000180263|ENST00000343958|FGD6;nc|ENSG00000180263|Q6ZV73-2|FGD6 ENST00000451107.3_1_12:95475298-95611245:-|nuORF ENST00000451107.3_1_12:95475298-95611245:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3118286132812 2 576.231704 1150.44886 NaN NaN NaN NaN NaN NaN NaN 88.535 1 84.54 84.04 85.04 -3.9953 0 0 0 0.22588 1 16865 16865 10.074 0 1 9976 6664 6429 6433 10074 10074 -0.12035104249821416 EDSSMYREY 9 Unmodified _EDSSMYREY_ 0 0 0 ENSG00000112367|ENST00000230124|FIG4 ENSG00000112367|ENST00000230124|FIG4 ENSG00000112367|ENST00000230124|FIG4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2770385742188 2 590.234778 1178.455 NaN NaN NaN NaN NaN NaN NaN 90.585 1 86.725 86.225 87.225 -3.8595 0 0 0 0.23508 1 17722 17722 7.9102 0 1 9977 2693 6430 6434 10075 10075 -0.1270858601828877 EDSSVLIPT 9 Unmodified _EDSSVLIPT_ 0 0 0 ENST00000420250.1_2_2:190526231-190530834:+|nuORF;nc|ENSG00000286053|L0R819|ASDURF;nc|ENSG00000109111|Q7KZ85-2|SUPT6H ENST00000420250.1_2_2:190526231-190530834:+|nuORF ENST00000420250.1_2_2:190526231-190530834:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.249755859375 2 480.747847 959.481142 0.056065 2.6953E-05 0.11531 5.5434E-05 0.17137 8.2387E-05 480.7478231841345 94.61 0.73708 90.619 90.212 90.949 -3.9907 26 20 2 0 0 0 0.17664 1 18574 18574 4.477 0 1 3530500 9978 9655 6431 6435 10076 10076 -0.00021948784524283838 EDSSVRWE 8 Unmodified _EDSSVRWE_ 0 0 0 ENST00000529357.5_1_17:43475293-43487738:-|nuORF;ENST00000531735.5_1_17:43481393-43507645:-|nuORF;nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27 ENST00000529357.5_1_17:43475293-43487738:-|nuORF ENST00000529357.5_1_17:43475293-43487738:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 504.7476806640625 2 504.225071 1006.43559 -0.060211 -3.036E-05 0.54891 0.00027677 0.48869 0.00024641 504.2253190046736 41.41 0.94851 38.92 38.422 39.371 -2.4896 56 26 3 0 0 0 1.0191 1 7384 7384 8.5933 6.9407 1 5282900 9979 5202 6432 6436 10077 10077 -0.06737174246893574 EDSSVRWE 8 Unmodified _EDSSVRWE_ 0 0 0 ENST00000529357.5_1_17:43475293-43487738:-|nuORF;ENST00000531735.5_1_17:43481393-43507645:-|nuORF;nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27 ENST00000529357.5_1_17:43475293-43487738:-|nuORF ENST00000529357.5_1_17:43475293-43487738:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 504.225071 1006.43559 0.31523 0.00015895 0.074763 3.7697E-05 0.38999 0.00019665 504.2250466176253 38.929 0.59797 38.929 38.603 39.201 0 0.016214 -0.00044213 NaN 8.5933 41 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4522800 9980 5202 6432 6436 -0.06737174246893574 EDSSVRWE 8 Unmodified _EDSSVRWE_ 0 0 0 ENST00000529357.5_1_17:43475293-43487738:-|nuORF;ENST00000531735.5_1_17:43481393-43507645:-|nuORF;nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27 ENST00000529357.5_1_17:43475293-43487738:-|nuORF ENST00000529357.5_1_17:43475293-43487738:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 504.225071 1006.43559 -0.22218 -0.00011203 0.66674 0.00033618 0.44455 0.00022415 504.2253958150578 41.625 0.75516 38.991 38.607 39.362 -2.6348 0.077707 0.00015484 NaN 8.5933 52 21 4 NaN NaN NaN NaN 0 NaN NaN 0 8349800 9981 5202 6432 6436 -0.06737174246893574 EDSSVRWE 8 Unmodified _EDSSVRWE_ 0 0 0 ENST00000529357.5_1_17:43475293-43487738:-|nuORF;ENST00000531735.5_1_17:43481393-43507645:-|nuORF;nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27 ENST00000529357.5_1_17:43475293-43487738:-|nuORF ENST00000529357.5_1_17:43475293-43487738:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 504.225071 1006.43559 -0.31808 -0.00016038 0.67237 0.00033902 0.35429 0.00017864 504.22538578185043 41.463 0.66057 38.812 38.443 39.103 -2.651 -0.10127 0.00016052 NaN 8.5933 45 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6491600 9982 5202 6432 6436 -0.06737174246893574 EDSYEDIS 8 Unmodified _EDSYEDIS_ 0 0 0 F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant;ENSG00000185010|ENST00000360256|F8;F8|p.N982Mfs*22|1|0.31|ENSG00000185010|chrX:154930845-154930845|T/-|frameshift_variant;F8|p.E1101Rfs*17|1|0.25|ENSG00000185010|chrX:154930489-154930490|-/T|frameshift_variant;F8|p.E1292Rfs*16|2|0.53|ENSG00000185010|chrX:154929920-154929920|T/-|frameshift_variant;F8|p.G1291Rfs*29|1|0.48|ENSG00000185010|chrX:154929919-154929920|-/T|frameshift_variant F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7403259277344 2 479.18782 956.361086 NaN NaN NaN NaN NaN NaN NaN 160.58 1 155.35 154.85 155.85 -5.2299 0 0 0 0.21486 1 31184 31184 5.7604 0 1 9983 6953 6433 6437 10078 10078 -0.11883981848939129 EDTAVKAQV 9 Unmodified _EDTAVKAQV_ 0 0 0 nc|ENSG00000187288|Q96AQ7-3|CIDEC nc|ENSG00000187288|Q96AQ7-3|CIDEC nc|ENSG00000187288|Q96AQ7-3|CIDEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2549133300781 2 480.753464 959.492375 0.00043021 2.0683E-07 0.38157 0.00018344 0.382 0.00018365 480.7534394418095 44.566 0.45385 41.776 41.605 42.059 -2.79 22 12 2 0 0 0 0.28819 1 8403 8403 32.305 5.4218 1 1863500 9984 12526 6434 6438 10079 10079 0.011008733096218748 EDTDDEAHL 9 Unmodified _EDTDDEAHL_ 0 0 0 REV__ENSG00000243414|ENST00000427199|TICAM2 REV__ENSG00000243414|ENST00000427199|TICAM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27978515625 2 522.709451 1043.40435 0.19742 0.0001032 -3.311 -0.0017307 -3.1135 -0.0016275 522.7091787297182 141.06 0.099243 141.06 140.99 141.09 0 4 2 2 0 0 0 0.86532 1 28083 28083 4.756 4.2312 1 1608600 + 9985 19800 6435 6439 10080 10080 -0.11561792071665877 EDTEDEELEA 10 Unmodified _EDTEDEELEA_ 0 0 0 nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1 nc|ENSG00000185024|Q92994-9|BRF1 nc|ENSG00000185024|Q92994-9|BRF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.25390625 2 590.230413 1178.44627 NaN NaN NaN NaN NaN NaN NaN 135.72 1 130.89 130.39 131.39 -4.8307 0 0 0 2.8426 1 26134 26134 0.043787 0.014505 1 9986 6954 6436 6440 10081 10081 -0.1358128117378783 EDTEFQEFLS 10 Unmodified _EDTEFQEFLS_ 0 0 0 RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19 RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7684936523438 2 622.769508 1243.52446 NaN NaN NaN NaN NaN NaN NaN 134.58 1 129.94 129.44 130.44 -4.6399 0 0 0 0.22588 1 26540 26540 9.3831 0 1 9987 3247 6437 6441 10082 10082 -0.08755803797885164 EDTESGKTL 9 Unmodified _EDTESGKTL_ 0 0 0 nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2741394042969 2 490.232561 978.45057 NaN NaN NaN NaN NaN NaN NaN 81.512 1 77.955 77.455 78.455 -3.557 0 0 0 0.15147 1 15920 15920 30.225 7.0764 1 9988 1915 6438 6442 10083 10083 -0.03951727169555852 EDTFHELLFKY 11 Unmodified _EDTFHELLFKY_ 0 0 0 REV__NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant REV__NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2380676269531 3 481.23812 1440.69253 0.28127 0.00013536 -0.64115 -0.00030855 -0.35988 -0.00017319 481.23787506293263 105.02 0.34295 105.02 104.83 105.17 0 13 9 2 0 0 0 0.79196 1 20660 20660 4.7159 0.52642 1 1812900 + 9989 17072 6439 6443 10084 10084 -0.010186968134348717 EDTFKQIY 8 Unmodified _EDTFKQIY_ 0 0 0 nc|ENSG00000182132|Q9NZI2-3|KCNIP1;ENSG00000182132|ENST00000328939|KCNIP1;nc|ENSG00000182132|Q9NZI2-4|KCNIP1;nc|ENSG00000182132|Q9NZI2|KCNIP1;nc|ENSG00000182132|Q9NZI2-5|KCNIP1 nc|ENSG00000182132|Q9NZI2-3|KCNIP1 nc|ENSG00000182132|Q9NZI2-3|KCNIP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2673950195312 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 109.2 1 104.82 104.32 105.32 -4.3776 0 0 0 0.21323 1 21522 21522 14.582 4.3983 1 9990 6765 6440 6444 10085 10085 -0.022422425476179342 EDTHTKRHQ 9 Unmodified _EDTHTKRHQ_ 0 0 0 REV__ZNF528|p.R426Q|1|0.23|ENSG00000167555|chr19:52416129-52416129|G/A|missense_variant REV__ZNF528|p.R426Q|1|0.23|ENSG00000167555|chr19:52416129-52416129|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3179321289062 2 576.281243 1150.54793 -0.10928 -6.2975E-05 3.2709 0.001885 3.1616 0.001822 576.2828135533385 57.294 0.52417 54.399 54.166 54.69 -2.8944 18 14 2 0 0 0 0.46541 1 11026 11026 21.747 1.293 1 1803700 + 9991 25581 6441 6445 10086 10086 -0.02131900450035573 EDTIEPFG 8 Unmodified _EDTIEPFG_ 0 0 0 REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1 REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7633972167969 2 454.205815 906.397078 NaN NaN NaN NaN NaN NaN NaN 63.857 1 60.601 60.101 61.101 -3.2567 0 0 0 0.21323 1 11982 11982 14.582 0 1 + 9992 25344 6442 6446 10087 10087 -0.05986479881403284 EDTKSDGPETT 11 Unmodified _EDTKSDGPETT_ 0 0 0 nc|ENSG00000198000|Q76FK4-2|NOL8;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8;NOL8|p.D1050*|1|0.39|ENSG00000198000|chr9:92301578-92301579|-/A|frameshift_variant nc|ENSG00000198000|Q76FK4-2|NOL8 nc|ENSG00000198000|Q76FK4-2|NOL8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2547607421875 2 590.254222 1178.49389 NaN NaN NaN NaN NaN NaN NaN 62.008 1 58.639 58.139 59.139 -3.3694 0 0 0 0.23379 1 11569 11569 5.2969 0.066215 1 9993 7420 6443 6447 10088 10088 -0.08821582182940801 EDTLRDIRY 9 Unmodified _EDTLRDIRY_ 0 0 0 REV__nc|ENSG00000138802|O95487-2|SEC24B REV__nc|ENSG00000138802|O95487-2|SEC24B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2674560546875 2 590.801477 1179.5884 0.44432 0.00026251 -0.49343 -0.00029152 -0.04911 -2.9014E-05 590.8011453012499 49.925 0.4136 46.926 46.689 47.103 -2.999 22 11 3 0 0 0 0.84208 1 9129 9129 11.64 0.84079 1 1674600 + 9994 16495 6444 6448 10089 10089 0.005790211497014752 EDTLRGIRY 9 Unmodified _EDTLRGIRY_ 0 0 0 REV__SEC24B|p.D1125G|1|0.13|ENSG00000138802|chr4:109531506-109531506|A/G|missense_variant REV__SEC24B|p.D1125G|1|0.13|ENSG00000138802|chr4:109531506-109531506|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21875 3 374.86825 1121.58292 0.054217 2.0324E-05 -1.2651 -0.00047423 -1.2108 -0.00045391 374.86739395222577 53.055 0.63054 49.967 49.726 50.356 -3.0876 31 17 3 0 0 0 0.58077 1 9774 9774 14.405 0.79051 1 2219800 + 9995 24600 6445 6449 10090 10090 0.026993423579142473 EDTLRGIRY 9 Unmodified _EDTLRGIRY_ 0 0 0 REV__SEC24B|p.D1125G|1|0.13|ENSG00000138802|chr4:109531506-109531506|A/G|missense_variant REV__SEC24B|p.D1125G|1|0.13|ENSG00000138802|chr4:109531506-109531506|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2122802734375 3 374.86825 1121.58292 -0.73452 -0.00027535 0.54561 0.00020453 -0.18891 -7.0817E-05 374.86834533856967 53.038 0.58333 49.942 49.656 50.239 -3.0954 26 16 2 0 0 0 0.50419 1 9808 9808 19.362 2.7961 1 1533900 + 9996 24600 6445 6449 10091 10091 0.026993423579142473 EDTMVSVLS 9 Unmodified _EDTMVSVLS_ 0 0 0 REV__nc|ENSG00000198947|P11532-16|DMD REV__nc|ENSG00000198947|P11532-16|DMD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2676696777344 2 490.733883 979.453213 -0.12738 -6.2508E-05 0.75801 0.00037198 0.63063 0.00030947 490.73406067358286 86.792 0.45757 83.063 82.872 83.33 -3.7289 16 12 2 0 0 0 0.65155 1 16568 16568 6.7232 0 1 1171500 + 9997 24235 6446 6450 10092 10092 -0.037335950362376025 EDTNKWGL 8 Unmodified _EDTNKWGL_ 0 0 0 nc|ENSG00000285188|Q08493-2|PDE4C;ENSG00000105650|ENST00000262805|PDE4C;nc|ENSG00000285188|Q08493|PDE4C nc|ENSG00000285188|Q08493-2|PDE4C nc|ENSG00000285188|Q08493-2|PDE4C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7867126464844 2 481.732532 961.45051 NaN NaN NaN NaN NaN NaN NaN 44.687 1 41.897 41.397 42.397 -2.79 0 0 0 0.20896 1 8401 8401 18.135 0 1 9998 2327 6447 6451 10093 10093 -0.03175682378889633 EDTNWIFY 8 Unmodified _EDTNWIFY_ 0 0 0 L1MD2_dup3350|chr5:176309943-176310863:+|2.4169742649477106|0.265229905058228|3.19|483.0|4|1|sense L1MD2_dup3350|chr5:176309943-176310863:+|2.4169742649477106|0.265229905058228|3.19|483.0|4|1|sense L1MD2_dup3350|chr5:176309943-176310863:+|2.4169742649477106|0.265229905058228|3.19|483.0|4|1|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.772216796875 2 544.24019 1086.46583 0.31402 0.0001709 0.88318 0.00048066 1.1972 0.00065156 544.2414804301702 136.55 0.17493 131.72 131.63 131.8 -4.8307 6 4 2 0 0 0 1.0095 1 26309 26309 5.7604 0.52976 1 698190 9999 12031 6448 6452 10094 10094 -0.07394815581710645 EDTPIEPD 8 Unmodified _EDTPIEPD_ 0 0 0 REV__nc|ENSG00000075292|Q14966-3|ZNF638 REV__nc|ENSG00000075292|Q14966-3|ZNF638 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.224609375 2 458.20073 914.386907 NaN NaN NaN NaN NaN NaN NaN 78.708 1 75.245 74.745 75.745 -3.4633 0 0 0 0.2343 1 15369 15369 0.12286 0 1 + 10000 14328 6449 6453 10095 10095 -0.07371087606668425 EDTPIEPD 8 Unmodified _EDTPIEPD_ 0 0 0 REV__nc|ENSG00000075292|Q14966-3|ZNF638 REV__nc|ENSG00000075292|Q14966-3|ZNF638 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2270812988281 2 458.20073 914.386907 NaN NaN NaN NaN NaN NaN NaN 57.156 1 53.98 53.48 54.48 -3.1761 0 0 0 0.21486 1 10647 10647 8.5933 1.304 1 + 10001 14328 6449 6453 10096 10096 -0.07371087606668425 EDTQKKIHKF 10 Unmodified _EDTQKKIHKF_ 0 0 0 CEP112|p.E582Rfs*4|1|0.3|ENSG00000154240|chr17:65961592-65961592|T/-|frameshift_variant;ENSG00000154240|ENST00000535342|CEP112 CEP112|p.E582Rfs*4|1|0.3|ENSG00000154240|chr17:65961592-65961592|T/-|frameshift_variant CEP112|p.E582Rfs*4|1|0.3|ENSG00000154240|chr17:65961592-65961592|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.237060546875 3 425.234822 1272.68264 NaN NaN NaN NaN NaN NaN NaN 146.36 1 141.36 140.86 141.86 -5 0 0 0 0.22588 1 28320 28320 3.5871 0.26742 1 10002 486 6450 6454 10097 10097 0.05720159971838257 EDTQLINF 8 Unmodified _EDTQLINF_ 0 0 0 ENSG00000114204|ENST00000264677|SERPINI2 ENSG00000114204|ENST00000264677|SERPINI2 ENSG00000114204|ENST00000264677|SERPINI2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2547302246094 2 490.24019 978.465826 0.10925 5.3559E-05 0.29048 0.0001424 0.39973 0.00019596 490.2402645867852 70.864 0.67131 67.396 67.06 67.731 -3.467 29 18 2 0 0 0 0.68128 1 13487 13487 16.942 2.3606 1 3040000 10003 2779 6451 6455 10098 10098 -0.024268155817139814 EDTRIKAF 8 Unmodified _EDTRIKAF_ 0 0 0 ENSG00000173376|ENST00000379692|NDNF ENSG00000173376|ENST00000379692|NDNF ENSG00000173376|ENST00000379692|NDNF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2641296386719 2 490.263999 978.513445 0.22559 0.0001106 0.017622 8.6395E-06 0.24321 0.00011924 490.26405705337817 83.605 0.61133 79.731 79.466 80.077 -3.8736 24 16 2 0 0 0 8448 1 15944 15944 0.063987 0.034705 1 1851500 10004 6290 6452 6456 10099 10099 0.02332883409144415 EDTSAGNR 8 Unmodified _EDTSAGNR_ 0 0 0 ENST00000495137.5_1_6:394829-397293:+|nuORF ENST00000495137.5_1_6:394829-397293:+|nuORF ENST00000495137.5_1_6:394829-397293:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2379455566406 2 425.188488 848.362424 0.29706 0.0001263 0.026905 1.144E-05 0.32396 0.00013774 425.1899511210546 68.326 1.3402 64.79 64.092 65.433 -3.5362 62 37 3 0 0 0 0.98676 1 12786 12786 6.7232 3.7279 1 4547400 10005 10562 6453 6457 10100 10100 -0.06782302969509146 EDTVKVVGI 9 Unmodified _EDTVKVVGI_ 0 0 0 ENST00000530105.1_1_11:57156392-57157417:-|nuORF;nc|ENSG00000186652|P13727-2|PRG2;ENSG00000186652|ENST00000311862|PRG2 ENST00000530105.1_1_11:57156392-57157417:-|nuORF ENST00000530105.1_1_11:57156392-57157417:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76654052734375 2 480.274032 958.533512 -0.33275 -0.00015981 0.076883 3.6925E-05 -0.25586 -0.00012289 480.27402127897915 59.947 0.63255 59.947 59.648 60.28 0 37 17 3 0 0 0 0.6329 1 11468 11468 10.824 0 1 6276500 10006 7074 6454 6458 10101 10101 0.052586343491157095 EDTVLHLCL 9 Unmodified _EDTVLHLCL_ 0 0 0 ENSG00000092439|ENST00000646667|TRPM7;ENST00000560516.1_1_15:50866997-50867273:-|nuORF ENSG00000092439|ENST00000646667|TRPM7 ENSG00000092439|ENST00000646667|TRPM7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2688598632812 2 521.765517 1041.51648 0.49639 0.000259 -0.78607 -0.00041014 -0.28968 -0.00015115 521.765052332357 104.95 0.62468 104.95 104.62 105.24 0 34 17 3 0 0 0 0.52414 1 20603 20603 18.135 1.0221 1 2469900 10007 1835 6455 6459 10102 10102 -0.00261609528365625 EDVAELSIS 9 Unmodified _EDVAELSIS_ 0 0 0 ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-5|FN1;ENST00000492816.6_1_2:216249553-216256565:-|nuORF;nc|ENSG00000115414|P02751-4|FN1;FN1|p.S1791Rfs*9|1|0.07|ENSG00000115414|chr2:215378239-215378239|A/-|frameshift_variant;FN1|p.L1714*|1|0.2|ENSG00000115414|chr2:215380832-215380832|G/-|frameshift_variant ENSG00000115414|ENST00000354785|FN1 ENSG00000115414|ENST00000354785|FN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76544189453125 2 481.73748 961.460406 NaN NaN NaN NaN NaN NaN NaN 116.53 1 111.95 111.45 112.45 -4.5815 0 0 0 0.22621 1 22362 22362 15.847 2.3393 1 10008 2853 6456 6460 10103 10103 -0.021865391641881615 EDVALYLSR 9 Unmodified _EDVALYLSR_ 0 0 0 ZNF205|p.E473Rfs*64|1|0.27|ENSG00000122386|chr16:3120076-3120076|C/-|frameshift_variant;ENSG00000122386|ENST00000219091|ZNF205 ZNF205|p.E473Rfs*64|1|0.27|ENSG00000122386|chr16:3120076-3120076|C/-|frameshift_variant ZNF205|p.E473Rfs*64|1|0.27|ENSG00000122386|chr16:3120076-3120076|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2820434570312 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 130.61 1 125.84 125.34 126.34 -4.7725 0 0 0 0.20699 1 25140 25140 21.537 5.3879 1 10009 3221 6457 6461 10104 10104 0.02053135235018999 EDVERAPHE 9 Unmodified _EDVERAPHE_ 0 0 0 REV__ENST00000332830.8_2_17:27277920-27278154:-|nuORF REV__ENST00000332830.8_2_17:27277920-27278154:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2656860351562 2 541.249077 1080.4836 0.12094 6.5456E-05 0.95814 0.00051859 1.0791 0.00058405 541.7518028062694 136.34 0.31464 131.45 131.31 131.62 -4.8951 12 8 2 0 0 0 0.60061 1 26208 26208 13.042 0.51092 1 1607200 + 10010 20633 6458 6462 10105 10105 -0.053421003268795175 EDVFGKLGP 9 Unmodified _EDVFGKLGP_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1;REV__LRP1|p.D1283Ifs*50|1|0.09|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant REV__ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25445556640625 2 481.2531 960.491647 0.061341 2.9521E-05 0.094592 4.5523E-05 0.15593 7.5044E-05 481.25304133174143 78.843 0.63702 75.333 74.918 75.555 -3.5102 36 17 3 0 0 0 0.6329 1 15314 15314 10.824 0.75 1 4449900 + 10011 15726;23808 6459 6463 10106 10106 0.009820786605814646 EDVGGEAL 8 Unmodified _EDVGGEAL_ 0 0 0 ENST00000388967.3_1_3:36809324-36810203:-|nuORF ENST00000388967.3_1_3:36809324-36810203:-|nuORF ENST00000388967.3_1_3:36809324-36810203:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 790.3670654296875 1 789.36249 788.355213 0.29805 0.00023527 -0.082271 -6.4941E-05 0.21578 0.00017033 789.3623338593384 54.722 2.1411 51.587 51.391 53.532 -3.1352 106 60 2 0 0 0 0.49114 1 10083 10083 28.487 0 1 12473000 10012 9350 6460 6464 10107 10107 -0.04743035569947551 EDVGGEAL 8 Unmodified _EDVGGEAL_ 0 0 0 ENST00000388967.3_1_3:36809324-36810203:-|nuORF ENST00000388967.3_1_3:36809324-36810203:-|nuORF ENST00000388967.3_1_3:36809324-36810203:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 789.36249 788.355213 0.54314 0.00042874 -0.31978 -0.00025242 0.22336 0.00017632 789.3621431109187 51.729 2.0244 51.729 51.542 53.567 0 0.092311 -0.00017772 NaN 28.487 90 56 2 NaN NaN NaN NaN 0 NaN NaN 0 11072000 10013 9350 6460 6464 -0.04743035569947551 EDVGGEAL 8 Unmodified _EDVGGEAL_ 0 0 0 ENST00000388967.3_1_3:36809324-36810203:-|nuORF ENST00000388967.3_1_3:36809324-36810203:-|nuORF ENST00000388967.3_1_3:36809324-36810203:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 789.36249 788.355213 0.31353 0.00024749 -0.019764 -1.5601E-05 0.29377 0.00023189 789.3624237814979 54.511 2.1275 51.627 51.394 53.522 -2.8837 -0.00987 5.91E-05 NaN 28.487 107 61 2 NaN NaN NaN NaN 0 NaN NaN 0 35310000 10014 9350 6460 6464 -0.04743035569947551 EDVGGEAL 8 Unmodified _EDVGGEAL_ 0 0 0 ENST00000388967.3_1_3:36809324-36810203:-|nuORF ENST00000388967.3_1_3:36809324-36810203:-|nuORF ENST00000388967.3_1_3:36809324-36810203:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 789.36249 788.355213 0.1721 0.00013585 0.034907 2.7554E-05 0.207 0.0001634 789.3624480497683 54.743 2.555 51.605 51.38 53.934 -3.1377 -0.031947 0.00010226 NaN 28.487 115 72 2 NaN NaN NaN NaN 0 NaN NaN 0 15729000 10015 9350 6460 6464 -0.04743035569947551 EDVGRQVL 8 Unmodified _EDVGRQVL_ 0 0 0 CCDC47-PMPCA|1|fusion;nc|ENSG00000165688|Q10713-2|PMPCA;ENSG00000165688|ENST00000371717|PMPCA CCDC47-PMPCA|1|fusion CCDC47-PMPCA|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23187255859375 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 124.55 1 119.79 119.29 120.29 -4.7681 0 0 0 0.22657 1 23919 23919 1.4551 0.77368 1 10016 421 6461 6465 10108 10108 0.021483103750369992 EDVGVNKL 8 Unmodified _EDVGVNKL_ 0 0 0 REV__NQO2|p.A26G|1|0.36|ENSG00000124588|chr6:3010094-3010094|C/G|missense_variant REV__NQO2|p.A26G|1|0.36|ENSG00000124588|chr6:3010094-3010094|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2357482910156 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 68.064 1 68.064 67.564 68.564 0 0 0 0 0.18417 1 13158 13158 30.225 8.4782 1 + 10017 24380 6462 6466 10109 10109 0.019015056264720442 EDVGVNKL 8 Unmodified _EDVGVNKL_ 0 0 0 REV__NQO2|p.A26G|1|0.36|ENSG00000124588|chr6:3010094-3010094|C/G|missense_variant REV__NQO2|p.A26G|1|0.36|ENSG00000124588|chr6:3010094-3010094|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2355651855469 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.52 1 60.263 59.763 60.763 -3.2567 0 0 0 0.21486 1 11919 11919 9.3474 0 1 + 10018 24380 6462 6466 10110 10110 0.019015056264720442 EDVISRQD 8 Unmodified _EDVISRQD_ 0 0 0 nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;ENSG00000117155|ENST00000342203|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP nc|ENSG00000117155|Q9Y2D8-2|SSX2IP nc|ENSG00000117155|Q9Y2D8-2|SSX2IP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2315368652344 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 138.59 1 138.59 138.09 139.09 0 0 0 0 0.21039 1 27523 27523 16.942 1.0951 1 10019 2977 6463 6467 10111 10111 -0.030568877298605912 EDVKGRIY 8 Unmodified _EDVKGRIY_ 0 0 0 NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENSG00000010292|ENST00000315579|NCAPD2;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2648010253906 2 490.263999 978.513445 0.079089 3.8774E-05 -0.22238 -0.00010902 -0.14329 -7.025E-05 490.26381936217626 67.216 0.56035 64.107 63.826 64.387 -3.1086 22 15 2 0 0 0 0.70613 1 13001 13001 13.508 2.684 1 2054600 10020 1061;11089 6464 6468 10112 10112 0.02332883409144415 EDVKGRIY 8 Unmodified _EDVKGRIY_ 0 0 0 NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENSG00000010292|ENST00000315579|NCAPD2;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2541198730469 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 81.199 1 77.36 76.86 77.86 -3.8392 0 0 0 0.21486 1 15414 15414 8.5933 0 1 10021 1061;11089 6464 6468 10113 10113 0.02332883409144415 EDVKGRIY 8 Unmodified _EDVKGRIY_ 0 0 0 NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENSG00000010292|ENST00000315579|NCAPD2;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2643127441406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 51.996 1 48.944 48.444 49.444 -3.0517 0 0 0 0.20294 1 9588 9588 23.148 0 1 10022 1061;11089 6464 6468 10114 10114 0.02332883409144415 EDVKGRIY 8 Unmodified _EDVKGRIY_ 0 0 0 NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENSG00000010292|ENST00000315579|NCAPD2;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2641296386719 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 77.487 1 73.828 73.328 74.328 -3.6588 0 0 0 0.21452 1 14754 14754 13.508 0 1 10023 1061;11089 6464 6468 10115 10115 0.02332883409144415 EDVKVLNF 8 Unmodified _EDVKVLNF_ 0 0 0 ENST00000528566.1_1_11:85427448-85429851:-|nuORF ENST00000528566.1_1_11:85427448-85429851:-|nuORF ENST00000528566.1_1_11:85427448-85429851:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7686767578125 2 482.260925 962.507297 -0.16679 -8.0437E-05 0.55538 0.00026784 0.38859 0.0001874 482.26115761801617 104.74 0.7225 100.53 100.07 100.79 -4.2183 27 20 2 0 0 0 0.93477 1 20538 20538 24.674 1.5255 1 1494800 10024 10937 6465 6469 10116 10116 0.02454365177618456 EDVLAAAKL 9 Unmodified _EDVLAAAKL_ 0 0 0 REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2579040527344 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 94.519 1 90.328 89.828 90.828 -4.1911 0 0 0 0.091359 1 18030 18030 39.957 11.47 1 + 10025 15651 6466 6470 10117 10117 0.055826516946467564 EDVLAAAKL 9 Unmodified _EDVLAAAKL_ 0 0 0 REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2496337890625 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 94.207 1 90.363 89.863 90.863 -3.844 0 0 0 0.12288 1 18071 18071 34.102 3.8776 1 + 10026 15651 6466 6470 10118 10118 0.055826516946467564 EDVLGGLIY 9 Unmodified _EDVLGGLIY_ 0 0 0 REV__ENST00000488673.6_1_9:37763841-37777701:+|nuORF REV__ENST00000488673.6_1_9:37763841-37777701:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2662048339844 2 489.760758 977.506963 0.076702 3.7566E-05 0.18545 9.0827E-05 0.26215 0.00012839 489.7605590070767 91.509 0.61776 87.584 87.206 87.823 -3.9251 32 17 2 0 0 0 0.59384 1 17836 17836 13.508 0 1 2155600 + 10027 17752 6467 6471 10119 10119 0.017309454577684846 EDVLWTKA 8 Unmodified _EDVLWTKA_ 0 0 0 ENST00000229328.9_1_12:120119136-120119388:+|nuORF ENST00000229328.9_1_12:120119136-120119388:+|nuORF ENST00000229328.9_1_12:120119136-120119388:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2540283203125 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 56.992 1 56.992 56.492 57.492 0 0 0 0 0.20896 1 10889 10889 18.135 0 1 10028 8152 6468 6472 10120 10120 0.009820786605473586 EDVNKWGL 8 Unmodified _EDVNKWGL_ 0 0 0 nc|ENSG00000113448|Q08499-11|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant;ENSG00000113448|ENST00000340635|PDE4D nc|ENSG00000113448|Q08499-11|PDE4D;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24151611328125 2 480.742899 959.471246 0.41067 0.00019743 1.873 0.00090043 2.2837 0.0010979 480.7451935232949 117.14 0.18144 112.78 112.73 112.91 -4.3585 6 4 2 0 0 0 0.72861 1 22557 22557 10.183 0.83596 1 743410 10029 12289;2743 6469 6473 10121 10121 -0.010110919992371237 EDVNLVLQ 8 Unmodified _EDVNLVLQ_ 0 0 0 tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1 tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1 tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2503967285156 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 107.91 1 107.91 107.41 108.41 0 0 0 0 0.20294 1 21218 21218 23.148 0 1 10030 26375 6470 6474 10122 10122 0.01945774797957256 EDVNLVLQ 8 Unmodified _EDVNLVLQ_ 0 0 0 tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1 tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1 tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25823974609375 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 112.22 1 107.95 107.45 108.45 -4.2725 0 0 0 0.20462 1 21606 21606 21.747 3.6117 1 10031 26375 6470 6474 10123 10123 0.01945774797957256 EDVNQLVL 8 Unmodified _EDVNQLVL_ 0 0 0 CCDC168|p.L5649V|1|0.35|ENSG00000175820|chr13:102733752-102733752|A/C|missense_variant CCDC168|p.L5649V|1|0.35|ENSG00000175820|chr13:102733752-102733752|A/C|missense_variant CCDC168|p.L5649V|1|0.35|ENSG00000175820|chr13:102733752-102733752|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2503356933594 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 68.434 1 65.254 64.754 65.754 -3.1796 0 0 0 0.21039 1 13291 13291 16.942 2.104 1 10032 415 6471 6475 10124 10124 0.01945774797957256 EDVQKKKSSNP 11 Unmodified _EDVQKKKSSNP_ 0 0 0 ENSG00000186871|ENST00000334463|ERCC6L ENSG00000186871|ENST00000334463|ERCC6L ENSG00000186871|ENST00000334463|ERCC6L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.754638671875 2 630.333141 1258.65173 0.66722 0.00042057 -0.50597 -0.00031893 0.16126 0.00010165 630.3328733649869 35.256 0.38494 32.862 32.67 33.055 -2.3938 18 10 2 0 0 0 0.77729 1 6460 6460 29.841 16.226 1 1964000 10033 7080 6472 6476 10125 10125 0.03274961866964077 EDVRRSAM 8 Unmodified _EDVRRSAM_ 0 0 0 nc|ENSG00000089234|Q7Z569-2|BRAP;ENSG00000089234|ENST00000419234|BRAP nc|ENSG00000089234|Q7Z569-2|BRAP nc|ENSG00000089234|Q7Z569-2|BRAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7842102050781 2 482.237458 962.460364 NaN NaN NaN NaN NaN NaN NaN 108.08 1 108.08 107.58 108.58 0 0 0 0 0.21452 1 21252 21252 13.508 2.3934 1 10034 1757 6473 6477 10126 10126 -0.022368176451664112 EDVRTKLP 8 Unmodified _EDVRTKLP_ 0 0 0 REV__ENSG00000115423|ENST00000389394|DNAH6 REV__ENSG00000115423|ENST00000389394|DNAH6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74407958984375 2 479.271824 956.529095 0.037583 1.8012E-05 -0.028294 -1.3561E-05 0.0092886 4.4518E-06 479.27173021935556 101.18 0.73578 97.022 96.666 97.402 -4.1594 45 20 3 0 0 0 0.66066 1 19916 19916 28.487 0 1 5040600 + 10035 15430 6474 6478 10127 10127 0.04909169926179402 EDVSGMPAL 9 Unmodified _EDVSGMPAL_ 0 0 0 GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant;ENSG00000114480|ENST00000429644|GBE1;GBE1|p.G429Vfs*7|2|0.09|ENSG00000114480|chr3:81586141-81586141|C/-|frameshift_variant GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24725341796875 2 459.715493 917.416433 -0.024066 -1.1063E-05 0.50114 0.00023038 0.47707 0.00021932 459.71550840623865 116.07 0.5556 111.59 111.28 111.83 -4.486 20 15 2 0 0 0 0.54354 1 22900 22900 16.942 1.0951 1 864710 10036 2793 6475 6479 10128 10128 -0.04557846862178394 EDVTEKLQ 8 Unmodified _EDVTEKLQ_ 0 0 0 ENSG00000140795|ENST00000394809|MYLK3 ENSG00000140795|ENST00000394809|MYLK3 ENSG00000140795|ENST00000394809|MYLK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24505615234375 2 481.245472 960.476391 -0.092127 -4.4336E-05 -0.177 -8.5182E-05 -0.26913 -0.00012952 481.24499023692965 78.767 0.59064 75.091 74.851 75.442 -3.676 19 16 2 0 0 0 8448 1 14978 14978 0.68139 0 1 735360 10037 4324 6476 6480 10129 10129 -0.0054283292729451205 EDVTVILNSP 10 Unmodified _EDVTVILNSP_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.G3718Afs*6|1|0.04|ENSG00000143341|chr1:186113995-186113995|G/-|frameshift_variant;HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant;HMCN1|p.Y2955Ifs*3|1|0.29|ENSG00000143341|chr1:186082933-186082934|-/A|frameshift_variant;HMCN1|p.L3491Hfs*10|1|0.12|ENSG00000143341|chr1:186095419-186095420|-/ATAT|frameshift_variant nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7899780273438 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 29.101 1 27.104 26.604 27.604 -1.9962 0 0 0 2.8426 1 4936 4936 0.043787 0.017581 1 10038 4474 6477 6481 10130 10130 0.02109698169647345 EDVVAHVVL 9 Unmodified _EDVVAHVVL_ 0 0 0 REV__nc|ENSG00000141576|Q96PX1-2|RNF157 REV__nc|ENSG00000141576|Q96PX1-2|RNF157 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2634582519531 2 490.7742 979.533846 0.23917 0.00011738 -0.25565 -0.00012547 -0.016484 -8.0899E-06 490.77411970842775 125.46 0.46812 120.86 120.58 121.05 -4.5984 19 12 2 0 0 0 0.54076 1 24689 24689 34.102 1.797 1 1420200 + 10039 16642 6478 6482 10131 10131 0.04326054068940266 EDVVLKLF 8 Unmodified _EDVVLKLF_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8;SNX8|p.L175M|1|0.42|ENSG00000106266|chr7:2271867-2271867|G/T|missense_variant ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78082275390625 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 20.258 1 18.623 18.123 19.123 -1.6351 0 0 0 0.2396 1 3109 3109 0 0 1 10040 2370 6479 6483 10132 10132 0.06612126217089553 EDVVQVRL 8 Unmodified _EDVVQVRL_ 0 0 0 REV__nc|ENSG00000172845|Q02447-4|SP3 REV__nc|ENSG00000172845|Q02447-4|SP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72357177734375 2 479.271824 956.529095 -0.014779 -7.083E-06 0.077319 3.7057E-05 0.06254 2.9974E-05 479.2718405109417 97.34 0.73104 97.34 96.945 97.676 0 48 20 3 0 0 0 0.44459 1 19096 19096 48.346 17.709 1 7518800 + 10041 18313 6480 6484 10133 10133 0.04909169926202139 EDVVQVRL 8 Unmodified _EDVVQVRL_ 0 0 0 REV__nc|ENSG00000172845|Q02447-4|SP3 REV__nc|ENSG00000172845|Q02447-4|SP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7232666015625 2 479.271824 956.529095 0.31749 0.00015216 -0.27671 -0.00013262 0.040778 1.9544E-05 479.2716593000475 101.42 0.65019 97.102 96.751 97.402 -4.3194 48 18 3 0 0 0 0.78482 1 19380 19380 25.399 0 1 6197900 + 10042 18313 6480 6484 10134 10134 0.04909169926202139 EDVVQVRL 8 Unmodified _EDVVQVRL_ 0 0 0 REV__nc|ENSG00000172845|Q02447-4|SP3 REV__nc|ENSG00000172845|Q02447-4|SP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7229309082031 2 479.271824 956.529095 0.37232 0.00017844 -0.31339 -0.0001502 0.058926 2.8242E-05 479.27165825086786 101.15 0.70233 97.162 96.789 97.491 -3.9895 47 19 3 0 0 0 0.9455 1 19401 19401 23.148 5.0021 1 4792000 + 10043 18313 6480 6484 10135 10135 0.04909169926202139 EDWCPFARR 9 Unmodified _EDWCPFARR_ 0 0 0 REV__ENSG00000141279|ENST00000322157|NPEPPS REV__ENSG00000141279|ENST00000322157|NPEPPS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2741088867188 2 590.271832 1178.52911 NaN NaN NaN NaN NaN NaN NaN 178.73 1 173.86 173.36 174.36 -4.8686 0 0 0 0.23508 1 35586 35586 1.8442 0.19162 1 + 10044 16617 6481 6485 10136 10136 -0.05301153345453713 EDWDERTK 8 Unmodified _EDWDERTK_ 0 0 0 CALR|p.A223T|1|0.31|ENSG00000179218|chr19:12940417-12940417|G/A|missense_variant CALR|p.A223T|1|0.31|ENSG00000179218|chr19:12940417-12940417|G/A|missense_variant CALR|p.A223T|1|0.31|ENSG00000179218|chr19:12940417-12940417|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20147705078125 3 360.164844 1077.4727 NaN NaN NaN NaN NaN NaN NaN 129.21 1 124.58 124.08 125.08 -4.6292 0 0 0 0.21486 1 25469 25469 3.2813 0.54611 1 10045 369 6482 6486 10137 10137 -0.06293502701146281 EDWFLKKL 8 Unmodified _EDWFLKKL_ 0 0 0 REV__nc|ENSG00000158163|Q8IYY4-2|DZIP1L REV__nc|ENSG00000158163|Q8IYY4-2|DZIP1L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2018127441406 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 147.89 1 142.73 142.23 143.23 -5.1557 0 0 0 0.21486 1 28624 28624 1.6526 0 1 + 10046 13769 6483 6487 10138 10138 0.05019217482708882 EDWNMGDI 8 Unmodified _EDWNMGDI_ 0 0 0 GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant;ENSG00000114480|ENST00000429644|GBE1 GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2730407714844 2 490.194925 978.375297 NaN NaN NaN NaN NaN NaN NaN 147.62 1 142.56 142.06 143.06 -5.0595 0 0 0 0.21486 1 28584 28584 5.7604 0 1 10047 2793 6484 6488 10139 10139 -0.11475607901627427 EDWPLHMLY 9 Unmodified _EDWPLHMLY_ 0 0 0 LOXL3|p.R547W|1|0.13|ENSG00000115318|chr2:74534715-74534715|G/A|missense_variant LOXL3|p.R547W|1|0.13|ENSG00000115318|chr2:74534715-74534715|G/A|missense_variant LOXL3|p.R547W|1|0.13|ENSG00000115318|chr2:74534715-74534715|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2798461914062 2 602.278792 1202.54303 0.34061 0.00020514 1.5023 0.00090478 1.8429 0.0011099 602.2796461333897 54.214 0.45763 54.214 54.103 54.561 0 15 12 2 0 0 0 0.73309 1 10337 10337 4.756 0.42677 1 838530 10048 12081 6485 6489 10140 10140 -0.05013920637020419 EDWPLHMLY 9 Unmodified _EDWPLHMLY_ 0 0 0 LOXL3|p.R547W|1|0.13|ENSG00000115318|chr2:74534715-74534715|G/A|missense_variant LOXL3|p.R547W|1|0.13|ENSG00000115318|chr2:74534715-74534715|G/A|missense_variant LOXL3|p.R547W|1|0.13|ENSG00000115318|chr2:74534715-74534715|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2811279296875 2 602.278792 1202.54303 NaN NaN NaN NaN NaN NaN NaN 108.57 1 104.44 103.94 104.94 -4.135 0 0 0 0.23508 1 20890 20890 8.5933 0.43775 1 10049 12081 6485 6489 10141 10141 -0.05013920637020419 EDWWEMKRKWC 11 Unmodified _EDWWEMKRKWC_ 0 0 0 REV__ENSG00000260097|ENST00000563237|SPDYE6 REV__ENSG00000260097|ENST00000563237|SPDYE6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2715454101562 3 532.907723 1595.70134 NaN NaN NaN NaN NaN NaN NaN 27.665 1 25.883 25.383 26.383 -1.7821 0 0 0 0.23698 1 4922 4922 0.45452 0.046251 1 + 10050 18141 6486 6490 10142 10142 -0.07268369720259216 EDWWERKRKWC 11 Unmodified _EDWWERKRKWC_ 0 0 0 REV__nc|ENSG00000205482|P0DV79|SPDYE18 REV__nc|ENSG00000205482|P0DV79|SPDYE18 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3846435546875 2 811.388259 1620.76197 NaN NaN NaN NaN NaN NaN NaN 116.92 1 116.92 116.42 117.42 0 0 0 0 0.23698 1 23028 23028 0.35063 0.081612 1 + 10051 18934 6487 6491 10143 10143 -0.02358516345680073 EDWWERKRKWC 11 Unmodified _EDWWERKRKWC_ 0 0 0 REV__nc|ENSG00000205482|P0DV79|SPDYE18 REV__nc|ENSG00000205482|P0DV79|SPDYE18 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3892211914062 2 811.388259 1620.76197 NaN NaN NaN NaN NaN NaN NaN 163.19 1 158.4 157.9 158.9 -4.7898 0 0 0 0.23698 1 32516 32516 1.3295 1.0225 1 + 10052 18934 6487 6491 10144 10144 -0.02358516345680073 EDWWERKRKWC 11 Unmodified _EDWWERKRKWC_ 0 0 0 REV__nc|ENSG00000205482|P0DV79|SPDYE18 REV__nc|ENSG00000205482|P0DV79|SPDYE18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3908081054688 2 811.388259 1620.76197 NaN NaN NaN NaN NaN NaN NaN 101.05 1 96.756 96.256 97.256 -4.297 0 0 0 0.23698 1 19335 19335 0.35063 0.081612 1 + 10053 18934 6487 6491 10145 10145 -0.02358516345680073 EDWWERKRKWC 11 Unmodified _EDWWERKRKWC_ 0 0 0 REV__nc|ENSG00000205482|P0DV79|SPDYE18 REV__nc|ENSG00000205482|P0DV79|SPDYE18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3877563476562 2 811.388259 1620.76197 NaN NaN NaN NaN NaN NaN NaN 116.19 1 111.61 111.11 112.11 -4.5815 0 0 0 0.23698 1 22295 22295 0 0 1 + 10054 18934 6487 6491 10146 10146 -0.02358516345680073 EDWWERKRKWC 11 Unmodified _EDWWERKRKWC_ 0 0 0 REV__nc|ENSG00000205482|P0DV79|SPDYE18 REV__nc|ENSG00000205482|P0DV79|SPDYE18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3896484375 2 811.388259 1620.76197 NaN NaN NaN NaN NaN NaN NaN 162.1 1 156.96 156.46 157.46 -5.1438 0 0 0 0.23634 1 31486 31486 3.2813 3.2813 1 + 10055 18934 6487 6491 10147 10147 -0.02358516345680073 EDWWERKRKWC 11 Unmodified _EDWWERKRKWC_ 0 0 0 REV__nc|ENSG00000205482|P0DV79|SPDYE18 REV__nc|ENSG00000205482|P0DV79|SPDYE18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3867797851562 2 811.388259 1620.76197 NaN NaN NaN NaN NaN NaN NaN 162.81 1 157.67 157.17 158.17 -5.1438 0 0 0 0.23698 1 31649 31649 0.30703 0 1 + 10056 18934 6487 6491 10148 10148 -0.02358516345680073 EDWWERKRKWC 11 Unmodified _EDWWERKRKWC_ 0 0 0 REV__nc|ENSG00000205482|P0DV79|SPDYE18 REV__nc|ENSG00000205482|P0DV79|SPDYE18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3880004882812 2 811.388259 1620.76197 NaN NaN NaN NaN NaN NaN NaN 177.2 1 172.33 171.83 172.83 -4.8739 0 0 0 0.23698 1 35263 35263 0 0 1 + 10057 18934 6487 6491 10149 10149 -0.02358516345680073 EDWWERKRKWC 11 Unmodified _EDWWERKRKWC_ 0 0 0 REV__nc|ENSG00000205482|P0DV79|SPDYE18 REV__nc|ENSG00000205482|P0DV79|SPDYE18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2647705078125 3 541.261265 1620.76197 NaN NaN NaN NaN NaN NaN NaN 65.932 1 62.649 62.149 63.149 -3.2832 0 0 0 0.22632 1 12400 12400 0 0 1 + 10058 18934 6487 6491 10150 10150 -0.02358516345680073 EDWWERKRKWC 11 Unmodified _EDWWERKRKWC_ 0 0 0 REV__nc|ENSG00000205482|P0DV79|SPDYE18 REV__nc|ENSG00000205482|P0DV79|SPDYE18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.390625 2 811.388259 1620.76197 NaN NaN NaN NaN NaN NaN NaN 119.26 1 114.79 114.29 115.29 -4.467 0 0 0 0.23698 1 22955 22955 0.30703 0.30703 1 + 10059 18934 6487 6491 10151 10151 -0.02358516345680073 EDWWERKRKWC 11 Unmodified _EDWWERKRKWC_ 0 0 0 REV__nc|ENSG00000205482|P0DV79|SPDYE18 REV__nc|ENSG00000205482|P0DV79|SPDYE18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2648315429688 3 541.261265 1620.76197 0.25485 0.00013794 3.8185 0.0020668 4.0733 0.0022047 541.5973785005713 126.97 0.13997 122.27 122.22 122.36 -4.6998 5 3 2 0 0 0 0.89084 1 24438 24438 0.00056442 0 1 718170 + 10060 18934 6487 6491 10152 10152 -0.02358516345680073 EDYDVMSFF 9 Unmodified _EDYDVMSFF_ 0 0 0 REV__ENST00000509177.1_1_8:15480615-15508356:+|nuORF REV__ENST00000509177.1_1_8:15480615-15508356:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3146362304688 2 576.73134 1151.44813 NaN NaN NaN NaN NaN NaN NaN 110.18 1 105.73 105.23 106.23 -4.4518 0 0 0 0.23508 1 21145 21145 11.64 1.5664 1 + 10061 14937 6488 6492 10153 10153 -0.12153898898873194 EDYEDLSCGF 10 Unmodified _EDYEDLSCGF_ 0 0 0 REV__ENST00000235345.5_1_1:67468895-67468988:-|nuORF REV__ENST00000235345.5_1_1:67468895-67468988:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2515869140625 2 589.221336 1176.42812 0.66867 0.00039399 1.4502 0.00085448 2.1189 0.0012485 589.2231114907682 115.96 0.78711 111.38 110.94 111.73 -4.5815 52 22 4 0 0 0 0.73842 1 22195 22195 7.2892 2.5332 1 2922900 + 10062 20081 6489 6493 10154 10154 -0.15303694629506026 EDYEPWKENFL 11 Unmodified _EDYEPWKENFL_ 0 0 0 REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2543029785156 3 490.55763 1468.65106 NaN NaN NaN NaN NaN NaN NaN 147.99 1 147.99 147.49 148.49 0 0 0 0 0.23698 1 29609 29609 2.6312 1.3016 1 + 10063 25320 6490 6494 10155 10155 -0.06451877572749254 EDYICYARF 9 Unmodified _EDYICYARF_ 0 0 0 nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM;NRCAM|p.I903Dfs*20|1|0.06|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant;NRCAM|p.N344Kfs*3|1|0.34|ENSG00000091129|chr7:108209464-108209464|G/-|frameshift_variant;NRCAM|p.A345Cfs*12|1|0.11|ENSG00000091129|chr7:108209463-108209464|-/A|frameshift_variant;NRCAM|p.F651Lfs*3|1|0.46|ENSG00000091129|chr7:108189730-108189730|G/-|frameshift_variant nc|ENSG00000091129|Q92823-3|NRCAM nc|ENSG00000091129|Q92823-3|NRCAM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2608642578125 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 139.31 1 134.67 134.17 135.17 -4.6439 0 0 0 0.19656 1 27505 27505 0.40827 0 1 10064 1804 6491 6495 10156 10156 -0.0754679753374603 EDYIMDEE 8 Unmodified _EDYIMDEE_ 0 0 0 nc|ENSG00000119715|O95718|ESRRB;ENSG00000119715|ENST00000644823|ESRRB;nc|ENSG00000119715|O95718-2|ESRRB;nc|ENSG00000119715|O95718-1|ESRRB nc|ENSG00000119715|O95718|ESRRB nc|ENSG00000119715|O95718|ESRRB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2734375 2 522.19733 1042.38011 NaN NaN NaN NaN NaN NaN NaN 52.429 1 52.429 51.929 52.929 0 0 0 0 0.21486 1 9965 9965 8.5933 1.304 1 10065 3097 6492 6496 10157 10157 -0.13938768549542147 EDYKYISE 8 Unmodified _EDYKYISE_ 0 0 0 ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2 ENST00000461880.5_1_6:31847863-31852380:-|nuORF ENST00000461880.5_1_6:31847863-31852380:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6910400390625 2 523.73748 1045.46041 -0.499 -0.00026135 -2.1502 -0.0011261 -2.6492 -0.0013875 523.736711217575 131.77 0.92955 126.92 126.64 127.57 -4.8527 48 26 3 0 0 0 0.60622 1 25294 25294 21.747 3.6003 1 2060900 10066 7574 6493 6497 10158 10158 -0.06050539164152724 EDYLKHLE 8 Unmodified _EDYLKHLE_ 0 0 0 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6897583007812 2 523.761289 1045.50803 NaN NaN NaN NaN NaN NaN NaN 164.35 1 159.56 159.06 160.06 -4.7898 0 0 0 0.22934 1 32840 32840 0.063987 0 1 + 10067 18324 6494 6498 10159 10159 -0.012908401733284336 EDYLKHLE 8 Unmodified _EDYLKHLE_ 0 0 0 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6897583007812 2 523.761289 1045.50803 NaN NaN NaN NaN NaN NaN NaN 164.37 1 159.58 159.08 160.08 -4.7898 0 0 0 0.21486 1 32845 32845 9.3474 0 1 + 10068 18324 6494 6498 10160 10160 -0.012908401733284336 EDYQFNYGYAL 11 Unmodified _EDYQFNYGYAL_ 0 0 0 REV__ENST00000529239.1_1_8:61850552-61850903:-|nuORF REV__ENST00000529239.1_1_8:61850552-61850903:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5350646972656 3 461.534825 1381.58265 NaN NaN NaN NaN NaN NaN NaN 144.05 1 139.11 138.61 139.61 -4.9445 0 0 0 0.23689 1 27815 27815 2.8433 0 1 + 10069 22740 6495 6499 10161 10161 -0.09288122152588585 EDYRAVVEEL 10 Unmodified _EDYRAVVEEL_ 0 0 0 REV__tr|U7SPH6|U7SPH6_FUSNUPeptidechainreleasefactor1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfAPE=3SV=1 REV__tr|U7SPH6|U7SPH6_FUSNUPeptidechainreleasefactor1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 408.1175537109375 3 408.203187 1221.58773 NaN NaN NaN NaN NaN NaN NaN 62.58 1 59.618 59.118 60.118 -2.9614 0 0 0 0.22588 1 12077 12077 6.1918 2.3155 1 + 10070 25004 6496 6500 10162 10162 -0.01419818289991781 EDYRDFLDTA 10 Unmodified _EDYRDFLDTA_ 0 0 0 REV__ENST00000485073.5_1_1:6713895-6761860:-|nuORF REV__ENST00000485073.5_1_1:6713895-6761860:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.777587890625 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 33.021 1 30.79 30.29 31.29 -2.2305 0 0 0 0.22588 1 6029 6029 3.9444 0.66309 1 + 10071 13893 6497 6501 10163 10163 -0.07632981703750374 EDYRKVLG 8 Unmodified _EDYRKVLG_ 0 0 0 REV__tr|U7SZZ4|U7SZZ4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00754PE=4SV=1 REV__tr|U7SZZ4|U7SZZ4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00754PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2645568847656 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 78.029 1 74.565 74.065 75.065 -3.4633 0 0 0 0.18417 1 15236 15236 30.225 0 1 + 10072 25259 6498 6502 10164 10164 0.02332883409144415 EEAAAIIAQ 9 Unmodified _EEAAAIIAQ_ 0 0 0 ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1 ENST00000472831.5_1_5:176884436-176895158:-|nuORF ENST00000472831.5_1_5:176884436-176895158:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2481384277344 2 458.242732 914.470912 0.30321 0.00013895 0.49559 0.0002271 0.7988 0.00036605 458.2430133777562 28.388 1.8803 28.388 27.801 29.681 0 155 53 5 0 0 0 0.62102 1 4970 4970 11.64 0 1 86017000 10073 2761 6499 6503 10165 10165 0.010254882809022092 EEAAELLYR 9 Unmodified _EEAAELLYR_ 0 0 0 REV__ENSG00000132518|ENST00000254854|GUCY2D REV__ENSG00000132518|ENST00000254854|GUCY2D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7683715820312 2 547.279846 1092.54514 -0.11313 -6.1915E-05 0.50435 0.00027602 0.39121 0.0002141 547.2801460810347 111.2 0.34986 106.77 106.58 106.93 -4.4231 13 9 2 0 0 0 0.81703 1 21936 21936 14.838 4.0388 1 1060200 + 10074 16121 6500 6504 10166 10166 0.002568313724395921 EEAAELLYR 9 Unmodified _EEAAELLYR_ 0 0 0 REV__ENSG00000132518|ENST00000254854|GUCY2D REV__ENSG00000132518|ENST00000254854|GUCY2D MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.279846 1092.54514 -0.078779 -4.3114E-05 0.94491 0.00051713 0.86613 0.00047402 547.2799326990095 111.34 0.31516 106.84 106.64 106.96 -4.4915 0.035423 0.00032991 NaN 14.838 16 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1368500 + 10075 16121 6500 6504 0.002568313724395921 EEAAERYL 8 Unmodified _EEAAERYL_ 0 0 0 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2746276855469 2 490.737814 979.461075 0.17022 8.3531E-05 -0.29147 -0.00014303 -0.12125 -5.9504E-05 490.73766169483565 76.346 0.57777 72.623 72.31 72.888 -3.7227 26 16 2 0 0 0 0.74718 1 14487 14487 24.674 6.5389 1 2007100 10076 7327 6501 6505 10167 10167 -0.02947699724472841 EEAAERYL 8 Unmodified _EEAAERYL_ 0 0 0 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 490.737814 979.461075 0.065339 3.2064E-05 -0.30314 -0.00014876 -0.2378 -0.0001167 490.7377096564343 76.048 0.4962 72.633 72.404 72.9 -3.4151 -0.010714 -0.00015551 NaN 24.674 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1865000 10077 7327 6501 6505 -0.02947699724472841 EEAAERYL 8 Unmodified _EEAAERYL_ 0 0 0 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 490.737814 979.461075 -0.045884 -2.2517E-05 0.27959 0.0001372 0.2337 0.00011469 490.73782301624 76.249 0.62024 72.615 72.305 72.925 -3.6337 -0.02893 0.00041643 NaN 24.674 34 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2304800 10078 7327 6501 6505 -0.02947699724472841 EEAAGAAPGAS 11 Unmodified _EEAAGAAPGAS_ 0 0 0 REV__nc|ENSG00000205189|Q96DT7-2|ZBTB10 REV__nc|ENSG00000205189|Q96DT7-2|ZBTB10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2505798339844 2 465.711796 929.40904 0.50838 0.00023676 1.449 0.00067482 1.9574 0.00091157 465.71234484315744 115.65 0.52388 111.3 111.05 111.57 -4.3503 25 14 2 0 0 0 0.59056 1 22288 22288 36.506 8.0117 1 1483200 + 10079 19581 6502 6506 10168 10168 -0.05848863138237448 EEAAGAAPGAS 11 Unmodified _EEAAGAAPGAS_ 0 0 0 REV__nc|ENSG00000205189|Q96DT7-2|ZBTB10 REV__nc|ENSG00000205189|Q96DT7-2|ZBTB10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.711796 929.40904 0.13479 6.2776E-05 1.7222 0.00080204 1.857 0.00086482 465.7124380928473 111.18 0.62485 111.18 110.82 111.45 0 -0.062054 3.5186E-05 NaN 36.506 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1827100 + 10080 19581 6502 6506 -0.05848863138237448 EEAAGAAPGAS 11 Unmodified _EEAAGAAPGAS_ 0 0 0 REV__nc|ENSG00000205189|Q96DT7-2|ZBTB10 REV__nc|ENSG00000205189|Q96DT7-2|ZBTB10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 465.711796 929.40904 -0.022508 -1.0482E-05 2.0299 0.00094537 2.0074 0.00093489 465.71259753153026 115.67 0.72163 111.2 110.94 111.67 -4.4726 -0.043876 0.00032184 NaN 36.506 33 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2186700 + 10081 19581 6502 6506 -0.05848863138237448 EEAAGAAPGAS 11 Unmodified _EEAAGAAPGAS_ 0 0 0 REV__nc|ENSG00000205189|Q96DT7-2|ZBTB10 REV__nc|ENSG00000205189|Q96DT7-2|ZBTB10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.711796 929.40904 0.22477 0.00010468 1.5767 0.00073427 1.8014 0.00083895 465.71241997810785 115.87 0.64752 111.29 111.01 111.66 -4.5815 0.048473 -0.00010036 NaN 36.506 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3255900 + 10082 19581 6502 6506 -0.05848863138237448 EEAAGPGAAAL 11 Unmodified _EEAAGPGAAAL_ 0 0 0 ENSG00000133243|ENST00000255608|BTBD2 ENSG00000133243|ENST00000255608|BTBD2 ENSG00000133243|ENST00000255608|BTBD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7381591796875 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 60.334 1 57.02 56.52 57.52 -3.3139 0 0 0 0.15347 1 11234 11234 27.629 4.8925 1 10083 3792 6503 6507 10169 10169 -0.018436997244748454 EEAAMALKV 9 Unmodified _EEAAMALKV_ 0 0 0 MOG|p.E141A|1|0.25|ENSG00000204655|chr6:29659652-29659652|A/C|missense_variant MOG|p.E141A|1|0.25|ENSG00000204655|chr6:29659652-29659652|A/C|missense_variant MOG|p.E141A|1|0.25|ENSG00000204655|chr6:29659652-29659652|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2538757324219 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 74.546 1 74.546 74.046 75.046 0 0 0 0 0.1761 1 14473 14473 26.884 0 1 10084 12157 6504 6508 10170 10170 0.01319005442917387 EEAAMALKV 9 Unmodified _EEAAMALKV_ 0 0 0 MOG|p.E141A|1|0.25|ENSG00000204655|chr6:29659652-29659652|A/C|missense_variant MOG|p.E141A|1|0.25|ENSG00000204655|chr6:29659652-29659652|A/C|missense_variant MOG|p.E141A|1|0.25|ENSG00000204655|chr6:29659652-29659652|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2531433105469 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 86.922 1 82.971 82.471 83.471 -3.9503 0 0 0 0.21065 1 16551 16551 20.454 2.3073 1 10085 12157 6504 6508 10171 10171 0.01319005442917387 EEAAMALKV 9 Unmodified _EEAAMALKV_ 0 0 0 MOG|p.E141A|1|0.25|ENSG00000204655|chr6:29659652-29659652|A/C|missense_variant MOG|p.E141A|1|0.25|ENSG00000204655|chr6:29659652-29659652|A/C|missense_variant MOG|p.E141A|1|0.25|ENSG00000204655|chr6:29659652-29659652|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2533874511719 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 86.648 1 82.919 82.419 83.419 -3.7289 0 0 0 0.18705 1 16569 16569 25.399 4.9457 1 10086 12157 6504 6508 10172 10172 0.01319005442917387 EEAANLKV 8 Unmodified _EEAANLKV_ 0 0 0 REV__ENSG00000166387|ENST00000299492|PPFIBP2 REV__ENSG00000166387|ENST00000299492|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.236328125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 23.547 1 21.994 21.494 22.494 -1.5532 0 0 0 0.21486 1 4068 4068 8.5933 0 1 + 10087 17842 6505 6509 10173 10173 0.019015056264720442 EEAASKGHVIY 11 Unmodified _EEAASKGHVIY_ 0 0 0 NCOR1|p.P1637Qfs*19|1|0.14|ENSG00000141027|chr17:16065526-16065526|G/-|frameshift_variant;nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1 NCOR1|p.P1637Qfs*19|1|0.14|ENSG00000141027|chr17:16065526-16065526|G/-|frameshift_variant NCOR1|p.P1637Qfs*19|1|0.14|ENSG00000141027|chr17:16065526-16065526|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3016357421875 2 602.303852 1202.59315 NaN NaN NaN NaN NaN NaN NaN 73.408 1 70.097 69.597 70.597 -3.3107 0 0 0 0.224 1 14310 14310 13.042 1.4022 1 10088 4343 6506 6510 10174 10174 -4.094707514923357E-05 EEAASLCKL 9 Unmodified _EEAASLCKL_ 0 0 0 REV__ENST00000600996.1_1_19:42012510-42012810:+|nuORF REV__ENST00000600996.1_1_19:42012510-42012810:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77484130859375 2 482.244418 962.474282 0.018388 8.8675E-06 -0.56575 -0.00027283 -0.54736 -0.00026396 482.24402436631783 40.048 1.1293 37.559 36.911 38.04 -2.4896 71 31 4 0 0 0 0.79204 1 7041 7041 16.942 6.7589 1 17813000 + 10089 23415 6507 6511 10175 10175 -0.008455849367464907 EEAATRIPA 9 Unmodified _EEAATRIPA_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.744140625 2 479.253631 956.49271 -0.02907 -1.3932E-05 -0.25981 -0.00012451 -0.28888 -0.00013845 479.25358333259896 35.755 0.43999 35.755 35.485 35.925 0 19 12 3 0 0 0 0.73268 1 6553 6553 24.021 11.489 1 1528000 10090 1558 6508 6512 10176 10176 0.012722930294671642 EEAAVASV 8 Unmodified _EEAAVASV_ 0 0 0 ENST00000485631.1_1_22:18189492-18210297:+|nuORF;nc|ENSG00000099968|Q9BXK5-4|BCL2L13;ENSG00000099968|ENST00000317582|BCL2L13 ENST00000485631.1_1_22:18189492-18210297:+|nuORF ENST00000485631.1_1_22:18189492-18210297:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7095031738281 2 388.195251 774.375948 NaN NaN NaN NaN NaN NaN NaN 94.354 1 94.354 93.854 94.854 0 0 0 0 0.21486 1 18476 18476 9.3474 0.75416 1 10091 1914 6509 6513 10177 10177 -0.020264451902903602 EEAAVVQY 8 Unmodified _EEAAVVQY_ 0 0 0 nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.3994140625 1 908.435989 907.428712 0.45175 0.00041039 -0.00042175 -3.8314E-07 0.45133 0.00041001 908.4359519658655 65.565 0.82448 62.282 61.86 62.684 -3.2832 46 23 3 0 0 0 0.31517 1 12326 12326 36.044 5.8194 1 4328400 10092 12344 6510 6514 10178 10178 -0.02870487127472643 EEAAVVQY 8 Unmodified _EEAAVVQY_ 0 0 0 nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 908.435989 907.428712 0.21054 0.00019126 0.17475 0.00015875 0.38529 0.00035001 908.4360711279221 62.057 0.6803 62.057 61.733 62.414 0 -0.17286 2.1152E-05 NaN 36.044 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 4727800 10093 12344 6510 6514 -0.02870487127472643 EEAAVVQY 8 Unmodified _EEAAVVQY_ 0 0 0 nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 908.435989 907.428712 0.21624 0.00019644 0.38722 0.00035176 0.60346 0.0005482 908.4363213279387 65.318 0.60726 62.271 61.97 62.578 -3.047 0.041842 0.00021416 NaN 36.044 33 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4867600 10094 12344 6510 6514 -0.02870487127472643 EEAAVVQY 8 Unmodified _EEAAVVQY_ 0 0 0 nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 908.435989 907.428712 0.47685 0.00043319 -0.013764 -1.2504E-05 0.46309 0.00042068 908.435917922005 65.766 0.63729 62.308 61.995 62.632 -3.4581 0.078752 -0.0001501 NaN 36.044 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2668200 10095 12344 6510 6514 -0.02870487127472643 EEACSGQCC 9 Unmodified _EEACSGQCC_ 0 0 0 ENST00000393577.7_1_12:66232345-66346194:+|nuORF ENST00000393577.7_1_12:66232345-66346194:+|nuORF ENST00000393577.7_1_12:66232345-66346194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2507629394531 2 465.14352 928.272488 NaN NaN NaN NaN NaN NaN NaN 76.022 1 72.607 72.107 73.107 -3.4151 0 0 0 0.19451 1 14834 14834 0.96228 0.954 1 10096 9396 6511 6515 10179 10179 -0.19451759956268688 EEACSGQCC 9 Unmodified _EEACSGQCC_ 0 0 0 ENST00000393577.7_1_12:66232345-66346194:+|nuORF ENST00000393577.7_1_12:66232345-66346194:+|nuORF ENST00000393577.7_1_12:66232345-66346194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24615478515625 2 465.14352 928.272488 NaN NaN NaN NaN NaN NaN NaN 76.617 1 72.894 72.394 73.394 -3.7227 0 0 0 0.19451 1 14511 14511 0.96228 0.954 1 10097 9396 6511 6515 10180 10180 -0.19451759956268688 EEADMMDEL 9 Unmodified _EEADMMDEL_ 0 0 0 REV__nc|ENSG00000178568|Q15303-4|ERBB4 REV__nc|ENSG00000178568|Q15303-4|ERBB4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2623291015625 2 541.704465 1081.39438 0.099851 5.409E-05 -3.7315 -0.0020214 -3.6317 -0.0019673 541.7023194416114 38.5 0.42531 36.058 35.983 36.408 -2.4419 16 11 2 0 0 0 0.54354 1 6865 6865 16.942 1.0951 1 528090 + 10098 18611 6512 6516 10181 10181 -0.14306439392908032 EEADRHQRY 9 Unmodified _EEADRHQRY_ 0 0 0 REV__nc|ENSG00000129159|P48547|KCNC1;REV__nc|ENSG00000116396|Q03721-2|KCNC4 REV__nc|ENSG00000116396|Q03721-2|KCNC4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2808837890625 2 602.2787 1202.54285 NaN NaN NaN NaN NaN NaN NaN 49.959 1 46.952 46.452 47.452 -3.0068 0 0 0 0.23508 1 9171 9171 12.532 1.7076 1 + 10099 15950;22299 6513 6517 10182 10182 -0.05032204312669819 EEAEFYNIA 9 Unmodified _EEAEFYNIA_ 0 0 0 ENSG00000180901|ENST00000322444|KCTD2 ENSG00000180901|ENST00000322444|KCTD2 ENSG00000180901|ENST00000322444|KCTD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7908935546875 2 543.242929 1084.47131 0.51902 0.00028195 0.33371 0.00018128 0.85273 0.00046324 543.2428791416208 119.34 1.0574 114.82 114.23 115.29 -4.5221 41 29 2 0 0 0 0.19311 1 23573 23573 37.974 25.442 1 2016400 10100 6700 6514 6518 10183 10183 -0.06755136789888638 EEAEFYNIA 9 Unmodified _EEAEFYNIA_ 0 0 0 ENSG00000180901|ENST00000322444|KCTD2 ENSG00000180901|ENST00000322444|KCTD2 ENSG00000180901|ENST00000322444|KCTD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7938232421875 2 543.242929 1084.47131 0.49033 0.00026637 0.089462 4.86E-05 0.57979 0.00031497 543.2428649297002 119.13 0.55872 114.73 114.42 114.98 -4.4088 25 15 2 0 0 0 0.35443 1 22903 22903 28.487 15.955 1 1423200 10101 6700 6514 6518 10184 10184 -0.06755136789888638 EEAEGRPDEPD 11 Unmodified _EEAEGRPDEPD_ 0 0 0 REV__ENSG00000130584|ENST00000245663|ZBTB46 REV__ENSG00000130584|ENST00000245663|ZBTB46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7589721679688 2 622.257296 1242.50004 0.12247 7.6207E-05 0.49854 0.00031022 0.62101 0.00038643 622.257743007621 49.71 0.52535 46.703 46.416 46.941 -3.0068 23 14 2 0 0 0 0.64855 1 9135 9135 15.248 3.0078 1 1599800 + 10102 16017 6515 6519 10185 10185 -0.11151063951410833 EEAEIIRKY 9 Unmodified _EEAEIIRKY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3349609375 2 575.808771 1149.60299 0.51439 0.00029619 -0.35383 -0.00020374 0.16057 9.2456E-05 575.8085972290108 49.72 0.7255 49.72 49.44 50.166 0 48 20 3 0 0 0 0.031786 1 9453 9453 79.596 43.469 1 6347400 10103 4520 6516 6520 10186 10186 0.034170932978668134 EEAEIIRKY 9 Unmodified _EEAEIIRKY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3115844726562 2 575.808771 1149.60299 -0.20193 -0.00011628 0.42241 0.00024323 0.22048 0.00012695 575.8089615836121 52.779 0.79824 49.895 49.449 50.247 -2.8837 57 22 3 0 0 0 0.00011658 3 9984 9984;10029;10089 125.53 73.261 1 8464900 10104 4520 6516 6520 10187;10188;10189 10187 0.034170932978668134 EEAEIIRKY 9 Unmodified _EEAEIIRKY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.329833984375 2 575.808771 1149.60299 0.14794 8.5186E-05 0.0038528 2.2185E-06 0.15179 8.7404E-05 575.8087978367329 52.869 0.80543 49.781 49.479 50.284 -3.0876 55 22 3 0 0 0 5.8837000000000003E-33 5 9745 9711;9745;9791;9815;9817 185.05 116.97 1 7015900 10105 4520 6516 6520 10190;10191;10192;10193;10194 10191 0.034170932978668134 EEAEIIRKY 9 Unmodified _EEAEIIRKY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.332763671875 2 575.808771 1149.60299 -0.040621 -2.339E-05 0.15102 8.6959E-05 0.1104 6.3569E-05 575.8088349885677 52.835 0.8254 49.739 49.414 50.239 -3.0954 58 23 3 0 0 0 5.0227E-44 3 9779 9723;9750;9779 199.75 131.67 1 5557500 10106 4520 6516 6520 10195;10196;10197 10197 0.034170932978668134 EEAEPYMHRA 10 Unmodified _EEAEPYMHRA_ 0 0 0 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-3|TAOK2;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.1073303222656 3 411.517 1231.52917 0.31261 0.00012865 -0.64059 -0.00026361 -0.32798 -0.00013497 411.51680141743697 30.167 0.59524 28.274 27.961 28.556 -1.8928 50 16 4 0 0 0 0.91149 1 5169 5169 6.1918 3.6934 1 7424500 10107 4817;12382 6517 6521 10198 10198 -0.07733198136111241 EEAEPYMHRA 10 Unmodified _EEAEPYMHRA_ 0 0 0 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-3|TAOK2;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 411.517 1231.52917 0.076607 3.1525E-05 -0.49689 -0.00020448 -0.42028 -0.00017295 411.51690482299335 28.157 0.516 28.157 27.905 28.421 0 -0.061534 8.6665E-05 NaN 6.1918 44 14 4 NaN NaN NaN NaN 0 NaN NaN 0 4649600 10108 4817;12382 6517 6521 -0.07733198136111241 EEAEPYMHRA 10 Unmodified _EEAEPYMHRA_ 0 0 0 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-3|TAOK2;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 411.517 1231.52917 0.3064 0.00012609 -0.59207 -0.00024365 -0.28567 -0.00011756 411.5167950782483 30.358 0.5654 28.241 27.941 28.507 -2.1167 0.02272 -3.0838E-05 NaN 6.1918 45 15 4 NaN NaN NaN NaN 0 NaN NaN 0 6971800 10109 4817;12382 6517 6521 -0.07733198136111241 EEAERPNEL 9 Unmodified _EEAERPNEL_ 0 0 0 REV__ENSG00000171798|ENST00000304613|KNDC1 REV__ENSG00000171798|ENST00000304613|KNDC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7787475585938 2 543.756735 1085.49892 NaN NaN NaN NaN NaN NaN NaN 119.32 1 114.68 114.18 115.18 -4.645 0 0 0 0.20155 1 22897 22897 23.148 0 1 + 10110 18250 6518 6522 10199 10199 -0.04041233529665078 EEAESGQSSY 10 Unmodified _EEAESGQSSY_ 0 0 0 REV__ENSG00000163913|ENST00000348417|IFT122 REV__ENSG00000163913|ENST00000348417|IFT122 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7782592773438 2 543.714733 1085.41491 NaN NaN NaN NaN NaN NaN NaN 58.059 1 54.854 54.354 55.354 -3.2052 0 0 0 0.22527 1 10828 10828 21.537 1.0834 1 + 10111 17628 6519 6523 10200 10200 -0.12437809417201606 EEAESGQSSY 10 Unmodified _EEAESGQSSY_ 0 0 0 REV__ENSG00000163913|ENST00000348417|IFT122 REV__ENSG00000163913|ENST00000348417|IFT122 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7920532226562 2 543.714733 1085.41491 NaN NaN NaN NaN NaN NaN NaN 58.09 1 54.885 54.385 55.385 -3.2052 0 0 0 0.22552 1 10834 10834 18.146 5.1039 1 + 10112 17628 6519 6523 10201 10201 -0.12437809417201606 EEAESGQSSY 10 Unmodified _EEAESGQSSY_ 0 0 0 REV__ENSG00000163913|ENST00000348417|IFT122 REV__ENSG00000163913|ENST00000348417|IFT122 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79638671875 2 543.714733 1085.41491 0.032575 1.7712E-05 -0.78515 -0.0004269 -0.75257 -0.00040919 543.7141946242178 52.492 0.73 49.397 48.994 49.724 -3.0954 57 20 4 0 0 0 0.52179 1 9661 9661 32.786 5.1569 1 9042100 + 10113 17628 6519 6523 10202 10202 -0.12437809417201606 EEAEVWSL 8 Unmodified _EEAEVWSL_ 0 0 0 REV__ENST00000573641.1_1_17:2598433-2598937:-|nuORF REV__ENST00000573641.1_1_17:2598433-2598937:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24395751953125 2 481.726915 961.439277 0.32545 0.00015678 -0.043363 -2.0889E-05 0.28209 0.00013589 481.72678061467343 101.27 0.63766 97.277 96.957 97.595 -3.9895 22 17 2 0 0 0 0.89552 1 19475 19475 19.439 5.9311 1 603070 + 10114 23188 6520 6524 10203 10203 -0.04298504473035791 EEAFCRTV 8 Unmodified _EEAFCRTV_ 0 0 0 REV__ENSG00000172348|ENST00000371374|RCAN2 REV__ENSG00000172348|ENST00000371374|RCAN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7248229980469 2 477.72111 953.427666 -0.040951 -1.9563E-05 1.3116 0.00062656 1.2706 0.000607 477.7217010920778 76.089 0.74144 72.674 72.297 73.039 -3.4151 53 20 3 0 0 0 0.53444 2 14844 14844;14902 26.341 3.5533 1 17553000 + 10115 18283 6521 6525 10204;10205 10204 -0.05091024768023544 EEAFCRTV 8 Unmodified _EEAFCRTV_ 0 0 0 REV__ENSG00000172348|ENST00000371374|RCAN2 REV__ENSG00000172348|ENST00000371374|RCAN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7381591796875 2 477.72111 953.427666 0.17892 8.5472E-05 1.8463 0.00088203 2.0252 0.0009675 477.72167216726046 76.444 1.2236 72.811 72.444 73.667 -3.6337 74 34 4 0 0 0 0.66265 1 14548 14548 18.135 3.5533 1 10839000 + 10116 18283 6521 6525 10206 10206 -0.05091024768023544 EEAFHKCG 8 Unmodified _EEAFHKCG_ 0 0 0 REV__ENST00000526623.2_1_11:64948241-64949272:-|nuORF REV__ENST00000526623.2_1_11:64948241-64949272:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2359313964844 2 460.700177 919.385802 0.26886 0.00012386 0.89209 0.00041098 1.1609 0.00053485 460.70058212840985 68.149 1.1555 64.613 63.884 65.04 -3.5362 56 32 3 0 0 0 0.83888 1 12808 12808 30.225 30.225 1 3917500 + 10117 22693 6522 6526 10207 10207 -0.07711580456543743 EEAFHKCG 8 Unmodified _EEAFHKCG_ 0 0 0 REV__ENST00000526623.2_1_11:64948241-64949272:-|nuORF REV__ENST00000526623.2_1_11:64948241-64949272:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2376708984375 2 460.700177 919.385802 0.3237 0.00014913 0.83124 0.00038295 1.1549 0.00053208 460.70058434396304 67.994 1.3465 64.667 63.935 65.282 -3.3268 92 38 3 0 0 0 0.88646 1 12776 12776 3.2813 3.2813 1 3058700 + 10118 22693 6522 6526 10208 10208 -0.07711580456543743 EEAFHKCG 8 Unmodified _EEAFHKCG_ 0 0 0 REV__ENST00000526623.2_1_11:64948241-64949272:-|nuORF REV__ENST00000526623.2_1_11:64948241-64949272:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.700177 919.385802 -0.10665 -4.9132E-05 1.3261 0.00061093 1.2194 0.0005618 460.7007769445645 64.553 1.2467 64.553 63.642 64.889 0 -0.053939 0.00021736 NaN 30.225 60 35 2 NaN NaN NaN NaN 0 NaN NaN 0 2587800 + 10119 22693 6522 6526 -0.07711580456543743 EEAFHKCG 8 Unmodified _EEAFHKCG_ 0 0 0 REV__ENST00000526623.2_1_11:64948241-64949272:-|nuORF REV__ENST00000526623.2_1_11:64948241-64949272:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.700177 919.385802 -0.12726 -5.863E-05 1.346 0.00062011 1.2187 0.00056148 460.7007427334221 67.704 1.3855 64.595 63.826 65.212 -3.1086 -0.011977 0.00023572 NaN 30.225 93 39 3 NaN NaN NaN NaN 0 NaN NaN 0 4329900 + 10120 22693 6522 6526 -0.07711580456543743 EEAGAWLVS 9 Unmodified _EEAGAWLVS_ 0 0 0 ENST00000479339.5_1_6:154799465-154799582:-|nuORF ENST00000479339.5_1_6:154799465-154799582:-|nuORF ENST00000479339.5_1_6:154799465-154799582:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2344970703125 2 481.234907 960.455261 0.0069781 3.3581E-06 0.61895 0.00029786 0.62593 0.00030122 481.2349449797452 67.259 0.2811 64.15 64.001 64.283 -3.1086 14 7 3 0 0 0 0.46541 1 13062 13062 21.747 2.3076 1 515100 10121 10338 6523 6527 10209 10209 -0.02654798236130773 EEAGAWLVS 9 Unmodified _EEAGAWLVS_ 0 0 0 ENST00000479339.5_1_6:154799465-154799582:-|nuORF ENST00000479339.5_1_6:154799465-154799582:-|nuORF ENST00000479339.5_1_6:154799465-154799582:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23468017578125 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 67.576 1 64.249 63.749 64.749 -3.3268 0 0 0 0.12288 1 12743 12743 34.102 7.7612 1 10122 10338 6523 6527 10210 10210 -0.02654798236130773 EEAGFAGTQAT 11 Unmodified _EEAGFAGTQAT_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2745361328125 2 541.24346 1080.47237 0.17201 9.3097E-05 0.82405 0.00044601 0.99606 0.00053911 541.243866373638 75.914 2.2143 72.191 71.509 73.724 -3.7227 135 63 3 0 0 0 0.72919 1 14599 14599 12.241 2.8932 1 7365700 10123 7612 6524 6528 10211 10211 -0.0646492242099157 EEAGGLRSP 9 Unmodified _EEAGGLRSP_ 0 0 0 REV__ENSG00000251322|ENST00000262795|SHANK3 REV__ENSG00000251322|ENST00000262795|SHANK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2300720214844 2 458.230156 914.445759 0.19657 9.0077E-05 0.24642 0.00011292 0.44299 0.00020299 458.2302184880799 17.695 0.43498 17.695 17.48 17.915 0 18 11 2 0 0 0 0.5059 1 2835 2835 19.257 1.1106 1 439050 + 10124 19830 6525 6529 10212 10212 -0.014885665216752386 EEAGVDKVN 9 Unmodified _EEAGVDKVN_ 0 0 0 REV__ATAD5|p.S1470Ffs*4|1|0.42|ENSG00000176208|chr17:30892750-30892751|-/T|frameshift_variant REV__ATAD5|p.S1470Ffs*4|1|0.42|ENSG00000176208|chr17:30892750-30892751|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23809814453125 2 480.735271 959.45599 0.2394 0.00011509 -0.11919 -5.7299E-05 0.12021 5.779E-05 480.73517754774167 49.194 0.88139 49.194 48.703 49.584 0 56 24 3 0 0 0 0.55539 1 9220 9220 23.148 5.0134 1 10694000 + 10125 13138 6526 6530 10213 10213 -0.025360035871017317 EEAHRALETP 10 Unmodified _EEAHRALETP_ 0 0 0 STAP2|p.R145H|1|0.45|ENSG00000178078|chr19:4329982-4329982|C/T|missense_variant STAP2|p.R145H|1|0.45|ENSG00000178078|chr19:4329982-4329982|C/T|missense_variant STAP2|p.R145H|1|0.45|ENSG00000178078|chr19:4329982-4329982|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.315185546875 2 576.785827 1151.5571 0.26348 0.00015197 2.682 0.0015469 2.9455 0.0016989 576.7871200838026 96.648 0.383 96.648 96.387 96.77 0 16 10 2 0 0 0 0.86078 1 18955 18955 17.113 0.96379 1 1936600 10126 25794 6527 6531 10214 10214 -0.012615518843858808 EEAHVPCGL 9 Unmodified _EEAHVPCGL_ 0 0 0 ENST00000360222.8_1_19:14857708-14876689:-|nuORF ENST00000360222.8_1_19:14857708-14876689:-|nuORF ENST00000360222.8_1_19:14857708-14876689:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72509765625 2 477.72111 953.427666 0.17892 8.5472E-05 1.8463 0.00088203 2.0252 0.0009675 477.72167216726046 76.444 1.2236 72.811 72.444 73.667 -3.6337 74 34 4 0 0 0 0.52414 1 14533 14533 18.135 1.1927 1 10839000 10127 9012 6528 6532 10215 10215 -0.05091024768034913 EEAHVPCGL 9 Unmodified _EEAHVPCGL_ 0 0 0 ENST00000360222.8_1_19:14857708-14876689:-|nuORF ENST00000360222.8_1_19:14857708-14876689:-|nuORF ENST00000360222.8_1_19:14857708-14876689:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.72111 953.427666 -0.040951 -1.9563E-05 1.3116 0.00062656 1.2706 0.000607 477.7217010920778 76.089 0.74144 72.674 72.297 73.039 -3.4151 -0.079335 -0.00022384 NaN 18.135 53 20 3 NaN NaN NaN NaN 0 NaN NaN 0 17553000 10128 9012 6528 6532 -0.05091024768034913 EEAHVPCGL 9 Unmodified _EEAHVPCGL_ 0 0 0 ENST00000360222.8_1_19:14857708-14876689:-|nuORF ENST00000360222.8_1_19:14857708-14876689:-|nuORF ENST00000360222.8_1_19:14857708-14876689:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.72111 953.427666 0.063938 3.0545E-05 1.3677 0.00065336 1.4316 0.0006839 477.72170936634257 76.494 0.75463 72.772 72.447 73.202 -3.7227 0.017859 -0.00017025 NaN 18.135 61 21 4 NaN NaN NaN NaN 0 NaN NaN 0 13233000 10129 9012 6528 6532 -0.05091024768034913 EEAICCRV 8 Unmodified _EEAICCRV_ 0 0 0 REV__ENST00000437774.5_1_16:90039155-90044150:+|nuORF REV__ENST00000437774.5_1_16:90039155-90044150:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5406494140625 2 461.709688 921.404823 0.099027 4.5722E-05 0.83158 0.00038395 0.93061 0.00042967 461.71000326069316 58.838 1.2462 55.633 54.99 56.236 -3.2052 79 35 3 0 0 0 0.49114 1 10934 10934 28.487 28.487 1 9554900 + 10130 21509 6529 6533 10216 10216 -0.05902367157148092 EEAICCRV 8 Unmodified _EEAICCRV_ 0 0 0 REV__ENST00000437774.5_1_16:90039155-90044150:+|nuORF REV__ENST00000437774.5_1_16:90039155-90044150:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.709688 921.404823 0.074431 3.4365E-05 0.80481 0.00037159 0.87924 0.00040595 461.7100311329626 55.498 1.168 55.498 54.877 56.046 0 -0.040029 -6.4907E-05 NaN 28.487 74 32 3 NaN NaN NaN NaN 0 NaN NaN 0 12994000 + 10131 21509 6529 6533 -0.05902367157148092 EEAICCRV 8 Unmodified _EEAICCRV_ 0 0 0 REV__ENST00000437774.5_1_16:90039155-90044150:+|nuORF REV__ENST00000437774.5_1_16:90039155-90044150:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.709688 921.404823 -0.15688 -7.2433E-05 0.98888 0.00045657 0.832 0.00038414 461.71011420961923 58.418 1.3879 55.508 54.861 56.248 -2.9105 -0.030499 0.00010506 NaN 28.487 98 39 3 NaN NaN NaN NaN 0 NaN NaN 0 12226000 + 10132 21509 6529 6533 -0.05902367157148092 EEAICCRV 8 Unmodified _EEAICCRV_ 0 0 0 REV__ENST00000437774.5_1_16:90039155-90044150:+|nuORF REV__ENST00000437774.5_1_16:90039155-90044150:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.709688 921.404823 0.035205 1.6255E-05 0.89148 0.00041161 0.92669 0.00042786 461.710037064049 58.766 1.3446 55.514 54.927 56.271 -3.2517 -0.024114 1.5126E-05 NaN 28.487 86 37 3 NaN NaN NaN NaN 0 NaN NaN 0 19289000 + 10133 21509 6529 6533 -0.05902367157148092 EEAICCRV 8 Unmodified _EEAICCRV_ 0 0 0 REV__ENST00000437774.5_1_16:90039155-90044150:+|nuORF REV__ENST00000437774.5_1_16:90039155-90044150:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.709688 921.404823 0.099027 4.5722E-05 0.83158 0.00038395 0.93061 0.00042967 461.71000326069316 58.838 1.2462 55.633 54.99 56.236 -3.2052 0.094642 -4.0185E-05 NaN 28.487 79 35 3 NaN NaN NaN NaN 0 NaN NaN 0 9554900 + 10134 21509 6529 6533 -0.05902367157148092 EEAIEEME 8 Unmodified _EEAIEEME_ 0 0 0 FECH|p.R327Gfs*9|1|0.1|ENSG00000066926|chr18:57554359-57554359|C/-|frameshift_variant;ENSG00000066926|ENST00000262093|FECH;nc|ENSG00000066926|P22830-2|FECH FECH|p.R327Gfs*9|1|0.1|ENSG00000066926|chr18:57554359-57554359|C/-|frameshift_variant FECH|p.R327Gfs*9|1|0.1|ENSG00000066926|chr18:57554359-57554359|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2746276855469 2 490.199873 978.385193 0.17482 8.5695E-05 2.3061 0.0011304 2.4809 0.0012161 490.200824089461 76.495 0.54822 72.772 72.549 73.097 -3.7227 28 15 2 0 0 0 0.96284 1 14487 14487 13.508 9.5635 1 1899700 10135 1380 6530 6534 10217 10217 -0.10486464686925956 EEAIIDKY 8 Unmodified _EEAIIDKY_ 0 0 0 RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2644958496094 2 490.75039 979.486227 NaN NaN NaN NaN NaN NaN NaN 70.206 1 66.957 66.457 67.457 -3.2492 0 0 0 0.23312 1 13660 13660 9.544 6.2627 1 10136 1202 6531 6535 10218 10218 -0.004336449219181304 EEAIIDKY 8 Unmodified _EEAIIDKY_ 0 0 0 RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2644958496094 2 490.75039 979.486227 NaN NaN NaN NaN NaN NaN NaN 70.225 1 66.975 66.475 67.475 -3.2492 0 0 0 0.18734 1 13664 13664 29.082 13.234 1 10137 1202 6531 6535 10219 10219 -0.004336449219181304 EEAIIYSY 8 Unmodified _EEAIIYSY_ 0 0 0 SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant;ENSG00000090054|ENST00000262554|SPTLC1 SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 990.4139404296875 1 987.466955 986.459678 -0.2228 -0.00022001 0.21838 0.00021564 -0.0044213 -4.3659E-06 987.4669611853317 112.86 1.1357 108.41 107.94 109.08 -4.4539 94 31 4 0 0 0 0.18731 1 22226 22226 46.921 26.05 1 51550000 10138 1776 6532 6536 10220 10220 -0.03409333813237936 EEAIIYSY 8 Unmodified _EEAIIYSY_ 0 0 0 SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant;ENSG00000090054|ENST00000262554|SPTLC1 SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 990.4169921875 1 987.466955 986.459678 0.7028 0.00069399 -0.63633 -0.00062836 0.066469 6.5636E-05 987.4662034427207 112.53 1.3232 108.26 107.59 108.91 -4.2726 114 37 5 0 0 0 0.18731 1 21675 21675 46.921 26.05 1 43817000 10139 1776 6532 6536 10221 10221 -0.03409333813237936 EEAIQTLSA 9 Unmodified _EEAIQTLSA_ 0 0 0 ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000182568|Q01826-2|SATB1 ENSG00000182568|ENST00000338745|SATB1 ENSG00000182568|ENST00000338745|SATB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2455749511719 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 24.901 1 23.366 22.866 23.866 -1.5342 0 0 0 0.20155 1 4071 4071 23.148 3.8914 1 10140 6795 6533 6537 10222 10222 -0.005428329272831434 EEAKFLRIS 9 Unmodified _EEAKFLRIS_ 0 0 0 ENST00000426339.1_1_10:98320174-98320360:+|nuORF ENST00000426339.1_1_10:98320174-98320360:+|nuORF ENST00000426339.1_1_10:98320174-98320360:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.766845703125 2 546.806031 1091.59751 0.33313 0.00018216 -0.25026 -0.00013684 0.082869 4.5313E-05 546.8058049444979 101.27 0.78251 96.975 96.572 97.354 -4.297 54 22 4 0 0 0 0.6329 1 19437 19437 10.824 2.2306 1 6928800 10141 9723 6534 6538 10223 10223 0.05537414506034111 EEAKIRSS 8 Unmodified _EEAKIRSS_ 0 0 0 REV__nc|ENSG00000197641|Q9UIV8-2|SERPINB13 REV__nc|ENSG00000197641|Q9UIV8-2|SERPINB13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24578857421875 2 460.245806 918.47706 0.24149 0.00011115 -0.124 -5.7069E-05 0.1175 5.4078E-05 460.2456903165578 23.078 0.41009 23.078 22.892 23.303 0 19 11 2 0 0 0 0.66265 1 3954 3954 18.135 3.5533 1 3083300 + 10142 19356 6535 6539 10224 10224 0.014560065124214816 EEAKIRSS 8 Unmodified _EEAKIRSS_ 0 0 0 REV__nc|ENSG00000197641|Q9UIV8-2|SERPINB13 REV__nc|ENSG00000197641|Q9UIV8-2|SERPINB13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2460021972656 2 460.245806 918.47706 -0.23728 -0.00010921 0.48372 0.00022263 0.24645 0.00011343 460.2460745372215 24.693 0.37291 22.84 22.642 23.015 -1.8534 20 10 2 0 0 0 0.66265 1 4058 4058 18.135 3.5533 1 1491800 + 10143 19356 6535 6539 10225 10225 0.014560065124214816 EEAKLDKE 8 Unmodified _EEAKLDKE_ 0 0 0 ENSG00000278685|ENST00000615129|IQCA1L ENSG00000278685|ENST00000615129|IQCA1L ENSG00000278685|ENST00000615129|IQCA1L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2376403808594 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 32.353 1 30.123 29.623 30.623 -2.2305 0 0 0 0.19753 1 5892 5892 25.399 4.9457 1 10144 8045 6536 6540 10226 10226 -0.0054283292729451205 EEAKLIGY 8 Unmodified _EEAKLIGY_ 0 0 0 REV__ENST00000449329.2_1_9:12972844-12973225:-|nuORF REV__ENST00000449329.2_1_9:12972844-12973225:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5425109863281 2 461.74765 921.480748 0.048796 2.2532E-05 0.062766 2.8982E-05 0.11156 5.1513E-05 461.7476886708615 76.2 0.65111 72.477 72.17 72.821 -3.7227 28 18 2 0 0 0 0.52597 1 14439 14439 26.884 2.8631 1 1119600 + 10145 21787 6537 6541 10227 10227 0.01686676286283273 EEAKLIGY 8 Unmodified _EEAKLIGY_ 0 0 0 REV__ENST00000449329.2_1_9:12972844-12973225:-|nuORF REV__ENST00000449329.2_1_9:12972844-12973225:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5425109863281 2 461.74765 921.480748 0.048796 2.2532E-05 0.062766 2.8982E-05 0.11156 5.1513E-05 461.7476886708615 76.2 0.65111 72.477 72.17 72.821 -3.7227 28 18 2 0 0 0 0.91917 1 14439 14439 26.884 6.43 1 1119600 + 10146 21787 6537 6541 10228 10228 0.01686676286283273 EEAKLIGY 8 Unmodified _EEAKLIGY_ 0 0 0 REV__ENST00000449329.2_1_9:12972844-12973225:-|nuORF REV__ENST00000449329.2_1_9:12972844-12973225:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.74765 921.480748 0.14256 6.5827E-05 0.27981 0.0001292 0.42237 0.00019503 461.74762535920854 72.409 0.52333 72.409 72.125 72.648 0 -0.024725 1.6449E-05 NaN 26.884 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1778000 + 10147 21787 6537 6541 0.01686676286283273 EEAKLIGY 8 Unmodified _EEAKLIGY_ 0 0 0 REV__ENST00000449329.2_1_9:12972844-12973225:-|nuORF REV__ENST00000449329.2_1_9:12972844-12973225:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.74765 921.480748 -0.1243 -5.7395E-05 0.7804 0.00036035 0.6561 0.00030295 461.74780224779715 75.79 0.5984 72.375 72.154 72.752 -3.4151 -0.058564 0.00047874 NaN 26.884 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1089400 + 10148 21787 6537 6541 0.01686676286283273 EEAKLIGY 8 Unmodified _EEAKLIGY_ 0 0 0 REV__ENST00000449329.2_1_9:12972844-12973225:-|nuORF REV__ENST00000449329.2_1_9:12972844-12973225:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.74765 921.480748 0.19832 9.1573E-05 0.1021 4.7144E-05 0.30042 0.00013872 461.7476043452992 76.107 0.61078 72.473 72.205 72.815 -3.6337 0.039825 -0.00014767 NaN 26.884 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1563300 + 10149 21787 6537 6541 0.01686676286283273 EEAKNILAA 9 Unmodified _EEAKNILAA_ 0 0 0 ENST00000604988.1_1_6:338073-350865:+|nuORF;nc|ENSG00000112679|Q9NRW4|DUSP22 ENST00000604988.1_1_6:338073-350865:+|nuORF ENST00000604988.1_1_6:338073-350865:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7693786621094 2 479.763832 957.513111 -0.1073 -5.148E-05 0.23699 0.0001137 0.12969 6.222E-05 479.7639846739819 50.114 1.8353 47.233 46.763 48.598 -2.8811 144 51 6 0 0 0 0.60805 1 9447 9447 12.532 0 1 189620000 10150 11731 6538 6542 10229 10229 0.032654636892857525 EEAKNILAA 9 Unmodified _EEAKNILAA_ 0 0 0 ENST00000604988.1_1_6:338073-350865:+|nuORF;nc|ENSG00000112679|Q9NRW4|DUSP22 ENST00000604988.1_1_6:338073-350865:+|nuORF ENST00000604988.1_1_6:338073-350865:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76812744140625 2 479.763832 957.513111 0.047665 2.2868E-05 0.11291 5.4169E-05 0.16057 7.7037E-05 479.7639539988803 50.252 0.88043 47.209 46.719 47.6 -3.0429 118 25 6 0 0 0 0.60805 1 9130 9130 12.532 0 1 227000000 10151 11731 6538 6542 10230 10230 0.032654636892857525 EEAKRWMEA 9 Unmodified _EEAKRWMEA_ 0 0 0 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3142700195312 2 575.271498 1148.52844 0.080662 4.6403E-05 0.012193 7.0144E-06 0.092856 5.3417E-05 575.2715828595938 46.717 0.69249 43.775 43.374 44.066 -2.9421 60 19 4 0 0 0 0.52396 1 8455 8455 18.146 4.2403 1 17710000 10152 6875;4315 6539 6543 10231 10231 -0.039879927851643515 EEAKRWMEA 9 Unmodified _EEAKRWMEA_ 0 0 0 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.271498 1148.52844 0.5507 0.0003168 -0.51607 -0.00029688 0.034634 1.9924E-05 575.2712454942888 43.751 0.694 43.751 43.329 44.023 0 -0.067441 -0.00055869 NaN 18.146 66 19 4 NaN NaN NaN NaN 0 NaN NaN 0 35755000 10153 6875;4315 6539 6543 -0.039879927851643515 EEAKRWMEA 9 Unmodified _EEAKRWMEA_ 0 0 0 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 575.271498 1148.52844 -0.056181 -3.2319E-05 0.17659 0.00010159 0.12041 6.9267E-05 575.2716497932397 46.745 0.68917 43.904 43.521 44.21 -2.8409 0.085832 0.00023824 NaN 18.146 59 19 4 NaN NaN NaN NaN 0 NaN NaN 0 22747000 10154 6875;4315 6539 6543 -0.039879927851643515 EEAKRWMEA 9 Unmodified _EEAKRWMEA_ 0 0 0 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.271498 1148.52844 -0.087661 -5.0429E-05 0.23122 0.00013302 0.14356 8.2587E-05 575.2717285368371 46.71 0.83178 43.843 43.371 44.203 -2.8665 0.025073 0.0003011 NaN 18.146 66 23 4 NaN NaN NaN NaN 0 NaN NaN 0 18540000 10155 6875;4315 6539 6543 -0.039879927851643515 EEAKVDNGE 9 Unmodified _EEAKVDNGE_ 0 0 0 REV__TMUB2|p.E108V|1|0.21|ENSG00000168591|chr17:44189309-44189309|A/T|missense_variant REV__TMUB2|p.E108V|1|0.21|ENSG00000168591|chr17:44189309-44189309|A/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 331.2288818359375 3 330.817333 989.430169 -0.30983 -0.0001025 -1.1559 -0.0003824 -1.4657 -0.00048489 330.8168934594733 76.427 0.71152 73.012 72.644 73.355 -3.4151 37 19 3 0 0 0 0.87609 1 14869 14869 7.609 4.0125 1 2769200 + 10156 24824 6540 6544 10232 10232 -0.06496897829367754 EEAKVDNGE 9 Unmodified _EEAKVDNGE_ 0 0 0 REV__TMUB2|p.E108V|1|0.21|ENSG00000168591|chr17:44189309-44189309|A/T|missense_variant REV__TMUB2|p.E108V|1|0.21|ENSG00000168591|chr17:44189309-44189309|A/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 330.817333 989.430169 -0.46527 -0.00015392 -1.0807 -0.00035752 -1.546 -0.00051144 330.81687489246156 72.661 0.65269 72.661 72.301 72.953 0 -0.28819 0.00017315 NaN 7.609 34 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2491800 + 10157 24824 6540 6544 -0.06496897829367754 EEAKVDNGE 9 Unmodified _EEAKVDNGE_ 0 0 0 REV__TMUB2|p.E108V|1|0.21|ENSG00000168591|chr17:44189309-44189309|A/T|missense_variant REV__TMUB2|p.E108V|1|0.21|ENSG00000168591|chr17:44189309-44189309|A/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 330.817333 989.430169 0.070561 2.3343E-05 -1.768 -0.0005849 -1.6975 -0.00056156 330.81674884297155 76.781 0.58437 73.015 72.712 73.296 -3.7664 0.065469 -0.00050898 NaN 7.609 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2168800 + 10158 24824 6540 6544 -0.06496897829367754 EEAKVDNGE 9 Unmodified _EEAKVDNGE_ 0 0 0 REV__TMUB2|p.E108V|1|0.21|ENSG00000168591|chr17:44189309-44189309|A/T|missense_variant REV__TMUB2|p.E108V|1|0.21|ENSG00000168591|chr17:44189309-44189309|A/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 330.817333 989.430169 -0.53444 -0.0001768 -1.1205 -0.00037067 -1.6549 -0.00054747 330.81693014298315 76.743 0.70835 73.109 72.681 73.39 -3.6337 0.16007 0.00013372 NaN 7.609 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2517400 + 10159 24824 6540 6544 -0.06496897829367754 EEAKVMEK 8 Unmodified _EEAKVMEK_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7765197753906 2 482.244418 962.474282 0.10444 5.0366E-05 0.088882 4.2863E-05 0.19332 9.3229E-05 482.24433410618076 38.382 1.0551 35.94 35.594 36.649 -2.4419 91 29 4 0 0 0 1.0011 1 6924 6924 12.532 0 1 27449000 + 10160 14286 6541 6545 10233 10233 -0.00845584936735122 EEAKVMEK 8 Unmodified _EEAKVMEK_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 482.244418 962.474282 -0.27958 -0.00013482 0.49847 0.00024039 0.2189 0.00010556 482.24456849759537 38.443 1.1183 35.894 35.562 36.681 -2.5491 0.0059305 0.00026579 NaN 12.532 91 31 4 NaN NaN NaN NaN 0 NaN NaN 0 35352000 + 10161 14286 6541 6545 -0.00845584936735122 EEAKVMEK 8 Unmodified _EEAKVMEK_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.244418 962.474282 0.092817 4.476E-05 0.090506 4.3646E-05 0.18332 8.8406E-05 482.24434443291386 38.234 1.1553 35.829 35.535 36.69 -2.4049 -0.058759 -0.00012769 NaN 12.532 97 32 4 NaN NaN NaN NaN 0 NaN NaN 0 25547000 + 10162 14286 6541 6545 -0.00845584936735122 EEAKVQSQY 9 Unmodified _EEAKVQSQY_ 0 0 0 AMOT|p.P239Hfs*14|2|0.34|ENSG00000126016|chrX:112822411-112822411|G/-|frameshift_variant;AMOT|p.S319Pfs*56|1|0.11|ENSG00000126016|chrX:112815796-112815796|C/-|frameshift_variant;AMOT|p.Q392Lfs*49|1|0.09|ENSG00000126016|chrX:112815575-112815576|-/TCCA|frameshift_variant;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant;ENSG00000126016|ENST00000371959|AMOT AMOT|p.P239Hfs*14|2|0.34|ENSG00000126016|chrX:112822411-112822411|G/-|frameshift_variant AMOT|p.P239Hfs*14|2|0.34|ENSG00000126016|chrX:112822411-112822411|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.261474609375 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 109.44 1 105.06 104.56 105.56 -4.3776 0 0 0 0.1761 1 21567 21567 26.884 8.7373 1 10163 148 6542 6546 10234 10234 -0.028280455242793323 EEALAQRF 8 Unmodified _EEALAQRF_ 0 0 0 nc|ENSG00000139637|Q9HB07|MYG1;ENSG00000139637|ENST00000267103|MYG1 nc|ENSG00000139637|Q9HB07|MYG1 nc|ENSG00000139637|Q9HB07|MYG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7703552246094 2 482.248349 962.482145 -0.081736 -3.9417E-05 -0.50893 -0.00024543 -0.59066 -0.00028485 482.2481245170171 72.154 0.67504 68.843 68.494 69.169 -3.3107 23 18 2 0 0 0 0.47312 1 14010 14010 46.021 11.919 1 1427900 10164 4257 6543 6547 10235 10235 -0.0005968962494762309 EEALAQRF 8 Unmodified _EEALAQRF_ 0 0 0 nc|ENSG00000139637|Q9HB07|MYG1;ENSG00000139637|ENST00000267103|MYG1 nc|ENSG00000139637|Q9HB07|MYG1 nc|ENSG00000139637|Q9HB07|MYG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 482.248349 962.482145 0.32165 0.00015512 -0.60847 -0.00029344 -0.28682 -0.00013832 482.2481393737672 72.428 0.71996 68.8 68.371 69.091 -3.6275 -0.041853 -0.0001676 NaN 46.021 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 995430 10165 4257 6543 6547 -0.0005968962494762309 EEALAQRF 8 Unmodified _EEALAQRF_ 0 0 0 nc|ENSG00000139637|Q9HB07|MYG1;ENSG00000139637|ENST00000267103|MYG1 nc|ENSG00000139637|Q9HB07|MYG1 nc|ENSG00000139637|Q9HB07|MYG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.248349 962.482145 0.27327 0.00013178 -0.29079 -0.00014023 -0.017517 -8.4473E-06 482.24825742388896 72.373 0.47925 68.834 68.536 69.016 -3.5385 -0.0078861 0.0001388 NaN 46.021 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1188000 10166 4257 6543 6547 -0.0005968962494762309 EEALGLVGVQ 10 Unmodified _EEALGLVGVQ_ 0 0 0 nc|ENSG00000242520|P43359|MAGEA5P nc|ENSG00000242520|P43359|MAGEA5P nc|ENSG00000242520|P43359|MAGEA5P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.1668395996094 3 338.853718 1013.53933 -0.45972 -0.00015578 0.13351 4.5241E-05 -0.32621 -0.00011054 338.85366736308185 16.869 0.3202 16.869 16.78 17.1 0 13 8 2 0 0 0 1.1001 1 2638 2638 1.0651 0.54873 1 2265000 10167 12620 6544 6548 10236 10236 0.03309732860770964 EEALGLVGVQ 10 Unmodified _EEALGLVGVQ_ 0 0 0 nc|ENSG00000242520|P43359|MAGEA5P nc|ENSG00000242520|P43359|MAGEA5P nc|ENSG00000242520|P43359|MAGEA5P MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 338.853718 1013.53933 -0.37686 -0.0001277 0.27991 9.4848E-05 -0.096948 -3.2851E-05 338.85366623740947 18.148 0.31591 16.837 16.686 17.002 -1.3109 -0.010511 7.8607E-05 NaN 1.914 22 8 4 NaN NaN NaN NaN 0 NaN NaN 0 2230700 10168 12620 6544 6548 0.03309732860770964 EEALGLVGVQ 10 Unmodified _EEALGLVGVQ_ 0 0 0 nc|ENSG00000242520|P43359|MAGEA5P nc|ENSG00000242520|P43359|MAGEA5P nc|ENSG00000242520|P43359|MAGEA5P MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 338.853718 1013.53933 -0.3964 -0.00013432 0.21221 7.1909E-05 -0.18419 -6.2413E-05 338.85365853721606 18.109 0.26778 16.837 16.696 16.964 -1.2722 -0.011038 9.7905E-06 NaN 1.914 19 7 4 NaN NaN NaN NaN 0 NaN NaN 0 1341500 10169 12620 6544 6548 0.03309732860770964 EEALKENP 8 Unmodified _EEALKENP_ 0 0 0 tr|U7SYX5|U7SYX5_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00851PE=4SV=1 tr|U7SYX5|U7SYX5_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00851PE=4SV=1 tr|U7SYX5|U7SYX5_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00851PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2403869628906 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 72.314 1 72.314 71.814 72.814 0 0 0 0 0.2074 1 14020 14020 19.439 0 1 10170 26286 6545 6549 10237 10237 -0.016911020987663505 EEALPVTTA 9 Unmodified _EEALPVTTA_ 0 0 0 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 930.478271484375 1 930.477854 929.470577 0.50754 0.00047226 -0.28066 -0.00026115 0.22688 0.00021111 930.4775018164349 72.702 1.2546 72.702 72.301 73.555 0 108 35 5 0 0 0 4.1063E-11 6 14076 14031;14076;14124;14177;14220;14274 156.16 81.733 1 267050000 10171 6939 6546 6550 10238;10239;10240;10241;10242;10243 10239 0.003020685610522378 EEALPVTTA 9 Unmodified _EEALPVTTA_ 0 0 0 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2501525878906 2 465.742565 929.470577 0.092632 4.3143E-05 -0.17155 -7.9899E-05 -0.078919 -3.6756E-05 465.7424651686115 72.751 1.3967 72.751 72.301 73.697 0 116 39 4 0 0 0 0.0057446 1 14165 14165 125.62 79.604 1 204070000 10172 6939 6546 6550 10244 10244 0.003020685610522378 EEALPVTTA 9 Unmodified _EEALPVTTA_ 0 0 0 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.4776611328125 1 930.477854 929.470577 0.10518 9.7867E-05 0.037439 3.4837E-05 0.14262 0.0001327 930.4778056905234 76.079 1.1971 72.664 72.225 73.422 -3.4151 106 33 5 0 0 0 1.3328E-06 6 14830 14776;14830;14886;14934;14954;14987 141.83 77.59 1 241590000 10173 6939 6546 6550 10245;10246;10247;10248;10249;10250 10246 0.003020685610522378 EEALPVTTA 9 Unmodified _EEALPVTTA_ 0 0 0 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2507629394531 2 465.742565 929.470577 -0.099489 -4.6336E-05 -0.044167 -2.0571E-05 -0.14366 -6.6907E-05 465.7425332480979 76.112 1.5434 72.697 72.154 73.697 -3.4151 137 43 6 0 0 0 4.3823E-06 1 14837 14837 147.83 99.485 1 245040000 10174 6939 6546 6550 10251 10251 0.003020685610522378 EEALPVTTA 9 Unmodified _EEALPVTTA_ 0 0 0 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 930.4779052734375 1 930.477854 929.470577 0.31235 0.00029064 -0.079821 -7.4272E-05 0.23253 0.00021637 930.4777007830719 76.496 1.0647 72.773 72.38 73.445 -3.7227 108 30 5 0 0 0 1.3328E-06 4 14481 14431;14481;14532;14580 141.83 78.862 1 209660000 10175 6939 6546 6550 10252;10253;10254;10255 10253 0.003020685610522378 EEALPVTTA 9 Unmodified _EEALPVTTA_ 0 0 0 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2502746582031 2 465.742565 929.470577 0.039405 1.8352E-05 -0.11154 -5.1947E-05 -0.07213 -3.3594E-05 465.7424870583662 76.495 1.2754 72.773 72.31 73.585 -3.7227 121 36 5 0 0 0 0.54076 1 14417 14417 34.102 15.967 1 123740000 10176 6939 6546 6550 10256 10256 0.003020685610522378 EEALPVTTA 9 Unmodified _EEALPVTTA_ 0 0 0 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 930.4779663085938 1 930.477854 929.470577 0.30806 0.00028665 -0.15566 -0.00014483 0.15241 0.00014181 930.47761468076 76.463 1.3962 72.829 72.375 73.771 -3.6337 112 39 5 0 0 0 4.1063E-11 6 14532 14483;14532;14581;14630;14680;14727 156.16 77.59 1 173150000 10177 6939 6546 6550 10257;10258;10259;10260;10261;10262 10258 0.003020685610522378 EEALPVTTA 9 Unmodified _EEALPVTTA_ 0 0 0 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2508239746094 2 465.742565 929.470577 0.17235 8.027E-05 -0.26823 -0.00012493 -0.095881 -4.4656E-05 465.7424030625021 76.433 1.6691 72.799 72.171 73.841 -3.6337 138 47 5 0 0 0 0.029847 1 14487 14487 100.37 64.327 1 118590000 10178 6939 6546 6550 10263 10263 0.003020685610522378 EEALRHVVL 9 Unmodified _EEALRHVVL_ 0 0 0 REV__ENST00000311085.8_2_5:118556714-118560404:+|nuORF REV__ENST00000311085.8_2_5:118556714-118560404:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2788696289062 2 533.306198 1064.59784 NaN NaN NaN NaN NaN NaN NaN 113.31 1 108.78 108.28 109.28 -4.5259 0 0 0 0.23508 1 21750 21750 7.2892 0.93513 1 + 10179 20486 6547 6551 10264 10264 0.06812834225888764 EEALRKAY 8 Unmodified _EEALRKAY_ 0 0 0 CUX2|p.K1180del|1|0.26|ENSG00000111249|chr12:111341930-111341932|AGA/-|inframe_deletion CUX2|p.K1180del|1|0.26|ENSG00000111249|chr12:111341930-111341932|AGA/-|inframe_deletion CUX2|p.K1180del|1|0.26|ENSG00000111249|chr12:111341930-111341932|AGA/-|inframe_deletion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2643127441406 2 490.263999 978.513445 0.022089 1.083E-05 -2.7213 -0.0013342 -2.6992 -0.0013233 490.26473991618633 58.184 0.1716 55.274 55.133 55.304 -2.9105 5 4 2 0 0 0 0.72861 1 11167 11167 10.183 1.5901 1 262360 10180 759 6548 6552 10265 10265 0.023328834091216777 EEALTSDKS 9 Unmodified _EEALTSDKS_ 0 0 0 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2735900878906 2 490.232561 978.45057 -0.30035 -0.00014724 0.77687 0.00038085 0.47652 0.0002336 490.2328696654196 36.769 1.1161 34.3 33.869 34.985 -2.4688 66 31 3 0 0 0 0.55979 1 6912 6912 15.847 0.078963 1 1486800 + 10181 15432 6549 6553 10266 10266 -0.03951727169567221 EEALVTVPAH 10 Unmodified _EEALVTVPAH_ 0 0 0 nc|ENSG00000114268|Q16877-3|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF;nc|ENSG00000114268|Q16877-2|PFKFB4 nc|ENSG00000114268|Q16877-3|PFKFB4 nc|ENSG00000114268|Q16877-3|PFKFB4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.282470703125 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 54.586 1 54.586 54.086 55.086 0 0 0 0 0.22569 1 10410 10410 15.847 3.3156 1 10182 2780 6550 6554 10267 10267 0.02053135235018999 EEANICKI 8 Unmodified _EEANICKI_ 0 0 0 REV__tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1 REV__tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2321472167969 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 141.72 1 137.07 136.57 137.57 -4.6493 0 0 0 0.21452 1 27999 27999 13.508 3.434 1 + 10183 25458 6551 6555 10268 10268 -0.014418541082250158 EEAPKVQTAA 10 Unmodified _EEAPKVQTAA_ 0 0 0 REV__ENST00000481438.1_1_9:34613781-34613940:-|nuORF REV__ENST00000481438.1_1_9:34613781-34613940:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2708129882812 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 35.836 1 33.56 33.06 34.06 -2.2766 0 0 0 0.22588 1 6310 6310 10.824 2.2306 1 + 10184 16377 6552 6556 10269 10269 0.009925448553758542 EEAPPDGAVA 10 Unmodified _EEAPPDGAVA_ 0 0 0 nc|ENSG00000153015|Q6UX04-2|CWC27;ENSG00000153015|ENST00000381070|CWC27;ENST00000545000.1_1_5:64180068-64314145:+|nuORF nc|ENSG00000153015|Q6UX04-2|CWC27 nc|ENSG00000153015|Q6UX04-2|CWC27 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7408752441406 2 478.221997 954.429441 -0.081134 -3.88E-05 0.026095 1.2479E-05 -0.055039 -2.6321E-05 478.22196286045386 34.384 1.8309 34.384 33.654 35.485 0 143 52 4 0 0 0 0.011669 6 6327 6222;6266;6310;6327;6363;6411 103.75 59.89 1 7753300 10185 4953 6553 6557 10270;10271;10272;10273;10274;10275 10273 -0.04959692478428224 EEAPPDGAVA 10 Unmodified _EEAPPDGAVA_ 0 0 0 nc|ENSG00000153015|Q6UX04-2|CWC27;ENSG00000153015|ENST00000381070|CWC27;ENST00000545000.1_1_5:64180068-64314145:+|nuORF nc|ENSG00000153015|Q6UX04-2|CWC27 nc|ENSG00000153015|Q6UX04-2|CWC27 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7234191894531 2 478.221997 954.429441 -0.40144 -0.00019198 0.44168 0.00021122 0.040242 1.9245E-05 478.2221645391981 36.848 2.0909 34.379 33.482 35.573 -2.4688 156 59 4 0 0 0 8.7244E-05 6 6815 6728;6773;6815;6859;6901;6945 131.27 71.194 1 13145000 10186 4953 6553 6557 10276;10277;10278;10279;10280;10281 10278 -0.04959692478428224 EEAPPDGAVA 10 Unmodified _EEAPPDGAVA_ 0 0 0 nc|ENSG00000153015|Q6UX04-2|CWC27;ENSG00000153015|ENST00000381070|CWC27;ENST00000545000.1_1_5:64180068-64314145:+|nuORF nc|ENSG00000153015|Q6UX04-2|CWC27 nc|ENSG00000153015|Q6UX04-2|CWC27 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7232971191406 2 478.221997 954.429441 0.098716 4.7208E-05 -0.16577 -7.9277E-05 -0.067059 -3.2069E-05 478.2219118001858 36.817 2.1067 34.469 33.582 35.688 -2.3479 167 60 4 0 0 0 0.00018778 7 6482 6444;6482;6522;6566;6619;6644;6663 123.45 64.772 1 8798600 10187 4953 6553 6557 10282;10283;10284;10285;10286;10287;10288 10283 -0.04959692478428224 EEAPPDGAVA 10 Unmodified _EEAPPDGAVA_ 0 0 0 nc|ENSG00000153015|Q6UX04-2|CWC27;ENSG00000153015|ENST00000381070|CWC27;ENST00000545000.1_1_5:64180068-64314145:+|nuORF nc|ENSG00000153015|Q6UX04-2|CWC27 nc|ENSG00000153015|Q6UX04-2|CWC27 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7231750488281 2 478.221997 954.429441 0.25758 0.00012318 -0.28954 -0.00013847 -0.031969 -1.5288E-05 478.2218365195836 37.001 2.0618 34.664 33.609 35.671 -2.3375 141 58 3 0 0 0 0.0023783 5 6449 6449;6496;6542;6586;6629 111.29 61.354 1 7079900 10188 4953 6553 6557 10289;10290;10291;10292;10293 10289 -0.04959692478428224 EEAPPPPPP 9 Unmodified _EEAPPPPPP_ 0 0 0 nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2 nc|ENSG00000119042|Q9UPW6-2|SATB2 nc|ENSG00000119042|Q9UPW6-2|SATB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2385559082031 2 465.732 929.449448 0.13332 6.2092E-05 -1.0858 -0.00050569 -0.95246 -0.00044359 465.7311747254895 35.469 0.62402 35.469 35.099 35.723 0 29 17 2 0 0 0 0.5026 1 6529 6529 34.187 7.8461 1 517950 10189 3058 6554 6558 10294 10294 -0.018098967478181294 EEAPPPPPP 9 Unmodified _EEAPPPPPP_ 0 0 0 nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2 nc|ENSG00000119042|Q9UPW6-2|SATB2 nc|ENSG00000119042|Q9UPW6-2|SATB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.23992919921875 2 465.732 929.449448 0.17593 8.1937E-05 -0.28743 -0.00013387 -0.1115 -5.193E-05 465.731792522162 38.595 0.3842 36.19 36.021 36.406 -2.4049 14 10 2 0 0 0 0.55758 1 6870 6870 24.674 6.5389 1 438920 10190 3058 6554 6558 10295 10295 -0.018098967478181294 EEAPQSEAP 9 Unmodified _EEAPQSEAP_ 0 0 0 nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;nc|ENSG00000138434|P28290-2|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF nc|ENSG00000138434|P28290-3|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7433776855469 2 479.211629 956.408705 -0.025029 -1.1994E-05 0.96726 0.00046352 0.94223 0.00045153 479.2115363774455 23.33 1.3774 23.33 22.823 24.201 0 117 39 4 0 0 0 0.56623 1 3926 3926 34.402 15.145 1 3026800 10191 4170 6555 6559 10296 10296 -0.07124282858092101 EEAPQSEAP 9 Unmodified _EEAPQSEAP_ 0 0 0 nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;nc|ENSG00000138434|P28290-2|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF nc|ENSG00000138434|P28290-3|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7434387207031 2 479.211629 956.408705 1.0868 0.00052079 -0.55352 -0.00026525 0.53323 0.00025553 479.2110264688128 24.844 1.3171 23.196 22.683 24 -1.6482 121 37 5 0 0 0 0.19141 1 4299 4299 49.554 5.696 1 4113000 10192 4170 6555 6559 10297 10297 -0.07124282858092101 EEAPQSEAP 9 Unmodified _EEAPQSEAP_ 0 0 0 nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;nc|ENSG00000138434|P28290-2|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF nc|ENSG00000138434|P28290-3|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7433776855469 2 479.211629 956.408705 -0.1972 -9.4499E-05 0.75864 0.00036355 0.56144 0.00026905 479.21159319830446 25.063 1.1396 23.209 22.744 23.883 -1.8534 98 32 4 0 0 0 0.14998 1 4077 4077 51.63 17.228 1 2811300 10193 4170 6555 6559 10298 10298 -0.07124282858092101 EEAPRGISA 9 Unmodified _EEAPRGISA_ 0 0 0 ENST00000525987.5_1_11:111959732-112064455:+|nuORF;ENST00000460924.6_1_11:112046255-112064455:+|nuORF;nc|ENSG00000197580|Q9BYV7-5|BCO2;nc|ENSG00000197580|Q9BYV7-4|BCO2;nc|ENSG00000197580|Q9BYV7-2|BCO2;ENSG00000197580|ENST00000357685|BCO2 ENST00000525987.5_1_11:111959732-112064455:+|nuORF ENST00000525987.5_1_11:111959732-112064455:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2382507324219 2 465.237981 928.461409 0.15704 7.3062E-05 1.5254 0.00070966 1.6824 0.00078272 465.23870516204494 30.659 0.62302 30.659 30.417 31.04 0 21 17 2 0 0 0 0.21532 1 5535 5535 36.506 8.8774 1 947480 10194 7381 6556 6560 10299 10299 -0.005682800046088232 EEAPRGISA 9 Unmodified _EEAPRGISA_ 0 0 0 ENST00000525987.5_1_11:111959732-112064455:+|nuORF;ENST00000460924.6_1_11:112046255-112064455:+|nuORF;nc|ENSG00000197580|Q9BYV7-5|BCO2;nc|ENSG00000197580|Q9BYV7-4|BCO2;nc|ENSG00000197580|Q9BYV7-2|BCO2;ENSG00000197580|ENST00000357685|BCO2 ENST00000525987.5_1_11:111959732-112064455:+|nuORF ENST00000525987.5_1_11:111959732-112064455:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23846435546875 2 465.237981 928.461409 0.012042 5.6023E-06 1.4334 0.00066686 1.4454 0.00067246 465.23885899129203 32.95 0.9733 30.719 30.331 31.304 -2.2305 33 27 2 0 0 0 0.12612 1 6000 6000 47.594 11.467 1 638140 10195 7381 6556 6560 10300 10300 -0.005682800046088232 EEAPRGISA 9 Unmodified _EEAPRGISA_ 0 0 0 ENST00000525987.5_1_11:111959732-112064455:+|nuORF;ENST00000460924.6_1_11:112046255-112064455:+|nuORF;nc|ENSG00000197580|Q9BYV7-5|BCO2;nc|ENSG00000197580|Q9BYV7-4|BCO2;nc|ENSG00000197580|Q9BYV7-2|BCO2;ENSG00000197580|ENST00000357685|BCO2 ENST00000525987.5_1_11:111959732-112064455:+|nuORF ENST00000525987.5_1_11:111959732-112064455:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2379455566406 2 465.237981 928.461409 0.20646 9.6054E-05 0.50256 0.00023381 0.70902 0.00032986 465.2382304596207 32.777 0.62903 30.63 30.343 30.972 -2.1468 28 17 2 0 0 0 0.15274 1 5710 5710 43.772 11.467 1 911200 10196 7381 6556 6560 10301 10301 -0.005682800046088232 EEAPRGISA 9 Unmodified _EEAPRGISA_ 0 0 0 ENST00000525987.5_1_11:111959732-112064455:+|nuORF;ENST00000460924.6_1_11:112046255-112064455:+|nuORF;nc|ENSG00000197580|Q9BYV7-5|BCO2;nc|ENSG00000197580|Q9BYV7-4|BCO2;nc|ENSG00000197580|Q9BYV7-2|BCO2;ENSG00000197580|ENST00000357685|BCO2 ENST00000525987.5_1_11:111959732-112064455:+|nuORF ENST00000525987.5_1_11:111959732-112064455:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2383728027344 2 465.237981 928.461409 0.42954 0.00019984 1.0221 0.00047552 1.4516 0.00067536 465.2384906816404 32.875 0.83079 30.66 30.351 31.182 -2.2158 33 23 2 0 0 0 0.15274 1 5704 5704 43.772 7.6454 1 639020 10197 7381 6556 6560 10302 10302 -0.005682800046088232 EEAPVGRLRAY 11 Unmodified _EEAPVGRLRAY_ 0 0 0 REV__ENSG00000198691|ENST00000370225|ABCA4 REV__ENSG00000198691|ENST00000370225|ABCA4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7572631835938 2 630.838394 1259.66223 NaN NaN NaN NaN NaN NaN NaN 111.62 1 107.13 106.63 107.63 -4.4915 0 0 0 0.23324 1 21422 21422 5.7319 0 1 + 10198 19436 6557 6561 10303 10303 0.04278989312047088 EEAQALAIQA 10 Unmodified _EEAQALAIQA_ 0 0 0 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.271728515625 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 86.365 1 82.638 82.138 83.138 -3.727 0 0 0 2.8426 1 16882 16882 19.362 17.434 1 10199 6229 6558 6562 10304 10304 0.009925448553758542 EEAQALAIQA 10 Unmodified _EEAQALAIQA_ 0 0 0 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.273193359375 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 86.595 1 82.868 82.368 83.368 -3.727 0 0 0 2.8426 1 16929 16929 14.405 13.56 1 10200 6229 6558 6562 10305 10305 0.009925448553758542 EEAQDDQADPN 11 Unmodified _EEAQDDQADPN_ 0 0 0 REV__ENST00000511802.5_1_5:10353827-10401026:+|nuORF REV__ENST00000511802.5_1_5:10353827-10401026:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.2001037597656 3 411.161828 1230.46365 -0.25906 -0.00010652 -1.2907 -0.00053067 -1.5497 -0.00063719 411.1613517644566 58.341 0.61588 55.43 55.032 55.648 -2.9105 35 17 3 0 0 0 0.78332 1 11174 11174 5.8681 4.1259 1 2031300 + 10201 16838 6559 6563 10306 10306 -0.14235940848129758 EEAQDDQADPN 11 Unmodified _EEAQDDQADPN_ 0 0 0 REV__ENST00000511802.5_1_5:10353827-10401026:+|nuORF REV__ENST00000511802.5_1_5:10353827-10401026:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 411.161828 1230.46365 -0.06765 -2.7815E-05 -1.1558 -0.00047524 -1.2235 -0.00050305 411.4955944220256 55.035 0.57244 55.035 54.729 55.302 0 -0.24679 0.00018094 NaN 5.8681 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2171700 + 10202 16838 6559 6563 -0.14235940848129758 EEAQDDQADPN 11 Unmodified _EEAQDDQADPN_ 0 0 0 REV__ENST00000511802.5_1_5:10353827-10401026:+|nuORF REV__ENST00000511802.5_1_5:10353827-10401026:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 411.161828 1230.46365 -0.25906 -0.00010652 -1.2907 -0.00053067 -1.5497 -0.00063719 411.1613517644566 58.341 0.61588 55.43 55.032 55.648 -2.9105 0.14833 1.4646E-05 NaN 5.8681 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2031300 + 10203 16838 6559 6563 -0.14235940848129758 EEAQDDQADPN 11 Unmodified _EEAQDDQADPN_ 0 0 0 REV__ENST00000511802.5_1_5:10353827-10401026:+|nuORF REV__ENST00000511802.5_1_5:10353827-10401026:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 411.161828 1230.46365 0.058079 2.388E-05 -1.6275 -0.00066917 -1.5694 -0.00064529 411.1611344969271 58.614 0.49492 55.363 55.066 55.561 -3.2517 0.080924 -0.00040087 NaN 5.8681 34 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2917300 + 10204 16838 6559 6563 -0.14235940848129758 EEAQDDQADPN 11 Unmodified _EEAQDDQADPN_ 0 0 0 REV__ENST00000511802.5_1_5:10353827-10401026:+|nuORF REV__ENST00000511802.5_1_5:10353827-10401026:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 411.161828 1230.46365 -0.32412 -0.00013327 -1.049 -0.00043129 -1.3731 -0.00056456 411.16143379800224 58.504 0.55421 55.299 55.128 55.683 -3.2052 0.01753 0.00031278 NaN 5.8681 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1822100 + 10205 16838 6559 6563 -0.14235940848129758 EEAQHVLEVV 10 Unmodified _EEAQHVLEVV_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000477222.5_1_2:238402069-238415922:+|nuORF;ENST00000469619.5_1_2:238402069-238419788:+|nuORF nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3361206054688 2 576.798403 1151.58225 0.050359 2.9047E-05 -0.51775 -0.00029864 -0.46739 -0.00026959 576.7981032054015 100.66 0.47865 96.499 96.187 96.666 -4.1594 21 13 2 0 0 0 0.68509 1 19745 19745 26.268 2.2476 1 1759500 10206 2874 6560 6564 10307 10307 0.012525029181688296 EEAQHVLEVV 10 Unmodified _EEAQHVLEVV_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000477222.5_1_2:238402069-238415922:+|nuORF;ENST00000469619.5_1_2:238402069-238419788:+|nuORF nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3369140625 2 576.798403 1151.58225 0.33726 0.00019453 -0.30964 -0.0001786 0.027622 1.5933E-05 576.7980519394077 100.48 0.54453 96.487 96.245 96.789 -3.9895 24 15 2 0 0 0 0.82238 1 19282 19282 22.736 9.6938 1 1343700 10207 2874 6560 6564 10308 10308 0.012525029181688296 EEAQHVLEVV 10 Unmodified _EEAQHVLEVV_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000477222.5_1_2:238402069-238415922:+|nuORF;ENST00000469619.5_1_2:238402069-238419788:+|nuORF nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.798403 1151.58225 0.40774 0.00023518 -0.59892 -0.00034546 -0.19119 -0.00011028 576.7979556825527 100.83 0.4424 96.533 96.296 96.738 -4.297 0.026572 -0.00013828 NaN 26.268 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1940400 10208 2874 6560 6564 0.012525029181688296 EEAQKIVY 8 Unmodified _EEAQKIVY_ 0 0 0 ENSG00000127074|ENST00000391995|RGS13 ENSG00000127074|ENST00000391995|RGS13 ENSG00000127074|ENST00000391995|RGS13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25714111328125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 34.966 1 32.572 32.072 33.072 -2.3938 0 0 0 0.21486 1 6432 6432 10.183 0 1 10209 3460 6561 6565 10309 10309 0.012100613149868877 EEAQKYAKV 9 Unmodified _EEAQKYAKV_ 0 0 0 REV__nc|ENSG00000157827|Q96PY5|FMNL2 REV__nc|ENSG00000157827|Q96PY5|FMNL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.285888671875 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 145.28 1 140.61 140.11 141.11 -4.6694 0 0 0 0.23508 1 28793 28793 11.64 0.81637 1 + 10210 17310 6562 6566 10310 10310 0.02053135235018999 EEAQLFKP 8 Unmodified _EEAQLFKP_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.252685546875 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 22.04 1 22.04 21.54 22.54 0 0 0 0 0.19954 1 3714 3714 24.674 2.9272 1 + 10211 19354 6563 6567 10311 10311 0.00982078660570096 EEAQLPRL 8 Unmodified _EEAQLPRL_ 0 0 0 ENSG00000007080|ENST00000445755|CCDC124 ENSG00000007080|ENST00000445755|CCDC124 ENSG00000007080|ENST00000445755|CCDC124 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7397766113281 2 478.263999 954.513445 -0.33079 -0.0001582 1.6489 0.0007886 1.3181 0.00063039 478.2646377322135 94.435 0.65839 94.435 94.005 94.664 0 27 18 2 0 0 0 8448 1 18489 18489 29.841 11.467 1 1382800 10212 1015 6564 6568 10312 10312 0.03436883409131042 EEAQLPRL 8 Unmodified _EEAQLPRL_ 0 0 0 ENSG00000007080|ENST00000445755|CCDC124 ENSG00000007080|ENST00000445755|CCDC124 ENSG00000007080|ENST00000445755|CCDC124 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.736083984375 2 478.263999 954.513445 0.039603 1.8941E-05 0.95415 0.00045634 0.99375 0.00047528 478.26475022452115 98.158 1.0379 94.038 93.62 94.658 -4.12 35 29 2 0 0 0 0.078324 1 19281 19281 67.344 16.489 1 1333500 10213 1015 6564 6568 10313 10313 0.03436883409131042 EEAQLPRL 8 Unmodified _EEAQLPRL_ 0 0 0 ENSG00000007080|ENST00000445755|CCDC124 ENSG00000007080|ENST00000445755|CCDC124 ENSG00000007080|ENST00000445755|CCDC124 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.263999 954.513445 0.1881 8.996E-05 2.541 0.0012153 2.7291 0.0013052 478.2641678233324 98.511 0.24693 94.242 94.086 94.333 -4.2692 0.0039194 0.0010359 NaN 67.344 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1076200 10214 1015 6564 6568 0.03436883409131042 EEAQLRLP 8 Unmodified _EEAQLRLP_ 0 0 0 REV__ENST00000528162.1_1_6:117803944-117806198:+|nuORF REV__ENST00000528162.1_1_6:117803944-117806198:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.736083984375 2 478.263999 954.513445 0.039603 1.8941E-05 0.95415 0.00045634 0.99375 0.00047528 478.26475022452115 98.158 1.0379 94.038 93.62 94.658 -4.12 35 29 2 0 0 0 8448 1 19277 19277 18.373 0 1 1333500 + 10215 17686 6565 6569 10314 10314 0.03436883409131042 EEAQLVAGV 9 Unmodified _EEAQLVAGV_ 0 0 0 REV__SPATA5|p.Q583Tfs*3|1|0.24|ENSG00000145375|chr4:122979257-122979258|-/A|frameshift_variant REV__SPATA5|p.Q583Tfs*3|1|0.24|ENSG00000145375|chr4:122979257-122979258|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22979736328125 2 458.242732 914.470912 -0.10194 -4.6715E-05 -0.32747 -0.00015006 -0.42941 -0.00019677 458.24253316951814 46.591 0.69629 43.725 43.507 44.203 -2.8666 27 19 2 0 0 0 0.084379 1 8472 8472 6.4869 0 1 695000 + 10216 16834 6566 6570 10315 10315 0.010254882809135779 EEAQPLPPV 9 Unmodified _EEAQPLPPV_ 0 0 0 nc|ENSG00000157060|Q9BZQ2-4|SHCBP1L;SHCBP1L|p.F179Lfs*8|1|0.5|ENSG00000157060|chr1:182951336-182951336|A/-|frameshift_variant;SHCBP1L|p.Y340Ifs*3|1|0.31|ENSG00000157060|chr1:182939234-182939235|-/T|frameshift_variant;SHCBP1L|p.K339Nfs*5|1|0.26|ENSG00000157060|chr1:182939235-182939235|T/-|frameshift_variant;ENSG00000157060|ENST00000367547|SHCBP1L nc|ENSG00000157060|Q9BZQ2-4|SHCBP1L nc|ENSG00000157060|Q9BZQ2-4|SHCBP1L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2579345703125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 37.033 1 34.696 34.196 35.196 -2.3375 0 0 0 0.14843 1 6543 6543 30.637 10.183 1 10217 5115 6567 6571 10316 10316 0.012100613149982564 EEAQPMAAP 9 Oxidation (M) _EEAQPM(Oxidation (M))AAP_ EEAQPM(1)AAP EEAQPM(50)AAP 0 0 1 ENSG00000255302|ENST00000530028|EID1 ENSG00000255302|ENST00000530028|EID1 ENSG00000255302|ENST00000530028|EID1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24578857421875 2 480.210575 958.406597 -0.027496 -1.3204E-05 0.084713 4.068E-05 0.057217 2.7476E-05 480.21060783709294 21.978 1.1866 21.978 21.493 22.679 0 86 33 3 0 0 0 0.11717 1 3746 3746 49.933 29.479 1 14217000 10218 7932 6568 6572 10317 10317 105 -0.0742703486754408 EEAQPMAAP 9 Oxidation (M) _EEAQPM(Oxidation (M))AAP_ EEAQPM(1)AAP EEAQPM(59)AAP 0 0 1 ENSG00000255302|ENST00000530028|EID1 ENSG00000255302|ENST00000530028|EID1 ENSG00000255302|ENST00000530028|EID1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25445556640625 2 480.210575 958.406597 0.83962 0.00040319 -0.94421 -0.00045342 -0.10459 -5.0226E-05 480.21015467480174 23.501 1.1223 21.948 21.338 22.46 -1.5532 87 31 4 0 0 0 0.09143 3 4079 4039;4079;4093 58.679 41.737 1 11613000 10219 7932 6568 6572 10318;10319;10320 10319 105 -0.0742703486754408 EEAQPMAAP 9 Oxidation (M) _EEAQPM(Oxidation (M))AAP_ EEAQPM(1)AAP EEAQPM(48)AAP 0 0 1 ENSG00000255302|ENST00000530028|EID1 ENSG00000255302|ENST00000530028|EID1 ENSG00000255302|ENST00000530028|EID1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.233642578125 2 480.210575 958.406597 -0.038196 -1.8342E-05 0.099864 4.7956E-05 0.061668 2.9613E-05 480.2106065438316 23.451 1.1476 21.998 21.44 22.588 -1.4535 77 32 3 0 0 0 0.12505 1 3821 3821 47.749 22.349 1 8897800 10220 7932 6568 6572 10321 10321 105 -0.0742703486754408 EEAQQKIQL 9 Unmodified _EEAQQKIQL_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7919311523438 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 72.526 1 69.215 68.715 69.715 -3.3107 0 0 0 0.22251 1 14134 14134 16.942 2.104 1 10221 3804 6569 6573 10322 10322 0.032325202637593975 EEARDWLY 8 Unmodified _EEARDWLY_ 0 0 0 ENSG00000132622|ENST00000254963|HSPA12B ENSG00000132622|ENST00000254963|HSPA12B ENSG00000132622|ENST00000254963|HSPA12B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2759399414062 2 541.251089 1080.48762 NaN NaN NaN NaN NaN NaN NaN 43.746 1 40.956 40.456 41.456 -2.79 0 0 0 0.14536 1 8206 8206 38.151 5.8457 1 10222 3749 6570 6574 10323 10323 -0.04940010833138331 EEARESNE 8 Unmodified _EEARESNE_ 0 0 0 REV__ENSG00000004846|ENST00000404938|ABCB5 REV__ENSG00000004846|ENST00000404938|ABCB5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7703552246094 2 482.204335 962.394118 NaN NaN NaN NaN NaN NaN NaN 71.915 1 68.604 68.104 69.104 -3.3107 0 0 0 0.21323 1 14010 14010 14.582 0 1 + 10223 13841 6571 6575 10324 10324 -0.08858355006225338 EEARKAHQL 9 Unmodified _EEARKAHQL_ 0 0 0 nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-3|IMMT nc|ENSG00000132305|Q16891-2|IMMT nc|ENSG00000132305|Q16891-2|IMMT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2821655273438 2 541.291079 1080.56761 NaN NaN NaN NaN NaN NaN NaN 138.1 1 133.46 132.96 133.96 -4.6413 0 0 0 0.22621 1 27262 27262 15.847 3.3156 1 10224 3714 6572 6576 10325 10325 0.030544755607024854 EEARKLLPP 9 Unmodified _EEARKLLPP_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.20037841796875 3 351.541475 1051.60259 0.060879 2.1401E-05 -0.080185 -2.8188E-05 -0.019306 -6.787E-06 351.54140344325936 54.114 6.8414 50.979 48.623 55.464 -3.1352 385 194 3 0 0 0 0.47592 1 9591 9591 17.113 17.04 1 19109000 10225 7732 6573 6577 10326 10326 0.07885718368675043 EEARKLLPP 9 Unmodified _EEARKLLPP_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 351.1797180175781 3 351.541475 1051.60259 -0.71509 -0.00025138 0.72096 0.00025345 0.0058703 2.0636E-06 351.5416761868269 54.149 7.0314 51.011 48.539 55.57 -3.1377 420 201 3 0 0 0 0.54058 1 9638 9638 12.241 4.0851 1 19718000 10226 7732 6573 6577 10327 10327 0.07885718368675043 EEARKLLPP 9 Unmodified _EEARKLLPP_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 351.541475 1051.60259 -0.18055 -6.3471E-05 0.17257 6.0665E-05 -0.0079816 -2.8059E-06 351.5414851364981 51.481 6.1351 51.481 48.88 55.015 0 0.33332 -0.00019975 NaN 17.113 384 174 3 NaN NaN NaN NaN 0 NaN NaN 0 11120000 10227 7732 6573 6577 0.07885718368675043 EEARKLLPP 9 Unmodified _EEARKLLPP_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 351.541475 1051.60259 -0.48409 -0.00017018 0.47589 0.00016729 -0.0082077 -2.8854E-06 351.5415863275522 54.005 6.5325 51.121 48.662 55.194 -2.8837 -0.02686 0.00012014 NaN 17.113 396 188 4 NaN NaN NaN NaN 0 NaN NaN 0 15314000 10228 7732 6573 6577 0.07885718368675043 EEARLAAL 8 Unmodified _EEARLAAL_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000488719.1_1_22:30975009-30975285:-|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2354431152344 2 436.745442 871.476331 0.018298 7.9917E-06 -0.59229 -0.00025868 -0.574 -0.00025069 436.7451376853925 71.146 0.72958 71.146 70.834 71.564 0 29 20 2 0 0 0 0.075417 1 13760 13760 71.922 13.243 1 2351400 10229 1922 6574 6578 10328 10328 0.03545211863365694 EEARLAAL 8 Unmodified _EEARLAAL_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000488719.1_1_22:30975009-30975285:-|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2167053222656 2 436.745442 871.476331 -0.21725 -9.4882E-05 -2.8176 -0.0012306 -3.0349 -0.0013255 436.7455168770645 74.226 0.69408 70.862 70.505 71.199 -3.3643 46 19 4 0 0 0 0.037024 2 14484 14465;14484 92.491 17.562 1 2891900 10230 1922 6574 6578 10329;10330 10330 0.03545211863365694 EEARLAAL 8 Unmodified _EEARLAAL_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000488719.1_1_22:30975009-30975285:-|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2355651855469 2 436.745442 871.476331 0.16577 7.2397E-05 -0.13325 -5.8194E-05 0.03252 1.4203E-05 436.74535899071435 74.549 0.69643 70.955 70.503 71.199 -3.594 31 19 2 0 0 0 0.21172 1 14176 14176 71.922 6.6873 1 2408800 10231 1922 6574 6578 10331 10331 0.03545211863365694 EEARLAAL 8 Unmodified _EEARLAAL_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000488719.1_1_22:30975009-30975285:-|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 436.745442 871.476331 0.13802 6.0281E-05 0.060278 2.6326E-05 0.1983 8.6607E-05 436.74540243378874 74.485 0.72606 70.808 70.482 71.208 -3.6764 -0.13449 0.00026485 NaN 92.491 36 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2013900 10232 1922 6574 6578 0.03545211863365694 EEARLASM 8 Unmodified _EEARLASM_ 0 0 0 ENSG00000187017|ENST00000645284|ESPN;nc|ENSG00000187017|B1AK53-2|ESPN;ENST00000477679.1_1_1:6511829-6520203:+|nuORF ENSG00000187017|ENST00000645284|ESPN ENSG00000187017|ENST00000645284|ESPN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7532653808594 2 453.72111 905.427666 NaN NaN NaN NaN NaN NaN NaN 45.837 1 42.996 42.496 43.496 -2.8409 0 0 0 0.23312 1 8642 8642 6.2058 1.3088 1 10233 7089 6575 6579 10332 10332 -0.02883024768038922 EEARLASM 8 Unmodified _EEARLASM_ 0 0 0 ENSG00000187017|ENST00000645284|ESPN;nc|ENSG00000187017|B1AK53-2|ESPN;ENST00000477679.1_1_1:6511829-6520203:+|nuORF ENSG00000187017|ENST00000645284|ESPN ENSG00000187017|ENST00000645284|ESPN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7532653808594 2 453.72111 905.427666 NaN NaN NaN NaN NaN NaN NaN 45.852 1 43.011 42.511 43.511 -2.8409 0 0 0 0.17145 1 8645 8645 34.402 9.0024 1 10234 7089 6575 6579 10333 10333 -0.02883024768038922 EEARLHKEIP 10 Unmodified _EEARLHKEIP_ 0 0 0 ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4 ENSG00000136875|ENST00000374198|PRPF4 ENSG00000136875|ENST00000374198|PRPF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 306.4261779785156 4 306.17011 1220.65134 0.26832 8.215E-05 -0.29421 -9.0078E-05 -0.025893 -7.9277E-06 306.16999723263126 32.295 0.69918 30.268 29.764 30.463 -2.0264 26 19 2 0 0 0 0.42762 1 5612 5612 10.151 6.2742 1 506220 10235 4047 6576 6580 10334 10334 0.04983586937760265 EEARLHKEIP 10 Unmodified _EEARLHKEIP_ 0 0 0 ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4 ENSG00000136875|ENST00000374198|PRPF4 ENSG00000136875|ENST00000374198|PRPF4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 306.17011 1220.65134 -0.22927 -7.0197E-05 0.33269 0.00010186 0.10341 3.1662E-05 306.17018877102953 32.231 0.48706 30.083 29.965 30.452 -2.1483 -0.092604 0.00034243 NaN 10.151 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 465500 10236 4047 6576 6580 0.04983586937760265 EEARLVAVA 9 Unmodified _EEARLVAVA_ 0 0 0 REV__ENST00000552540.5_2_12:57118240-57118823:-|nuORF REV__ENST00000552540.5_2_12:57118240-57118823:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7248229980469 2 479.271824 956.529095 -0.024347 -1.1669E-05 0.15707 7.528E-05 0.13272 6.3611E-05 479.27184879724916 76.088 0.67149 72.673 72.404 73.075 -3.4151 29 18 2 0 0 0 0.45788 1 14844 14844 26.268 10.421 1 3178000 + 10237 22948 6577 6581 10335 10335 0.04909169926179402 EEARLVAVA 9 Unmodified _EEARLVAVA_ 0 0 0 REV__ENST00000552540.5_2_12:57118240-57118823:-|nuORF REV__ENST00000552540.5_2_12:57118240-57118823:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72515869140625 2 479.271824 956.529095 0.083784 4.0155E-05 0.13107 6.2821E-05 0.21486 0.00010298 479.27187318301986 76.532 0.68389 72.809 72.447 73.131 -3.7227 34 19 2 0 0 0 0.45788 1 14515 14515 32.786 4.2988 1 1924000 + 10238 22948 6577 6581 10336 10336 0.04909169926179402 EEARRQLAA 9 Unmodified _EEARRQLAA_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26806640625 2 522.283254 1042.55196 0.11913 6.2221E-05 -0.19209 -0.00010033 -0.072959 -3.8105E-05 522.2831272604951 16.551 0.34132 16.551 16.405 16.746 0 19 9 3 0 0 0 0.62921 1 2562 2562 13.042 5.7532 1 4796800 10239 2935 6578 6582 10337 10337 0.032381890436681715 EEARRQLAA 9 Unmodified _EEARRQLAA_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2821044921875 2 522.283254 1042.55196 -1.1379 -0.00059431 0.99273 0.00051849 -0.14518 -7.5824E-05 522.283788698236 17.675 0.34229 16.402 16.178 16.52 -1.2722 13 9 2 0 0 0 0.64382 1 2605 2605 10.074 1.3285 1 1582500 10240 2935 6578 6582 10338 10338 0.032381890436681715 EEARRQLAA 9 Unmodified _EEARRQLAA_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2671508789062 2 522.283254 1042.55196 -1.206 -0.00062987 1.0362 0.00054121 -0.16975 -8.8655E-05 522.283797734678 17.793 0.28721 16.278 16.148 16.435 -1.5148 17 7 3 0 0 0 0.47592 1 2596 2596 17.113 16.705 1 1194600 10241 2935 6578 6582 10339 10339 0.032381890436681715 EEARSRAH 8 Unmodified _EEARSRAH_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7221374511719 2 478.238847 954.463141 -0.30093 -0.00014392 0.73371 0.00035089 0.43278 0.00020697 478.2402610439546 57.202 1.0433 57.202 56.536 57.58 0 48 29 2 0 0 0 0.69031 2 10834 10834;10844 14.582 1.0738 1 3565000 10242 7315 6579 6583 10340;10341 10340 -0.01591226196012485 EEARTLLE 8 Unmodified _EEARTLLE_ 0 0 0 REV__ENSG00000112290|ENST00000392589|WASF1 REV__ENSG00000112290|ENST00000392589|WASF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2533264160156 2 480.753464 959.492375 -0.055708 -2.6782E-05 0.30825 0.00014819 0.25254 0.00012141 480.7536263862317 58.145 0.61632 55.234 54.928 55.544 -2.9105 32 17 2 0 0 0 0.58432 1 11134 11134 23.148 0.41214 1 2385300 + 10243 15291 6580 6584 10342 10342 0.011008733096332435 EEASANYF 8 Unmodified _EEASANYF_ 0 0 0 ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22 ENST00000520132.1_1_5:150071315-150073858:-|nuORF ENST00000520132.1_1_5:150071315-150073858:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 930.4777221679688 1 930.383953 929.376677 0.45917 0.00042721 -0.1897 -0.00017649 0.26948 0.00025072 930.3837131571449 72.116 0.66209 72.116 71.742 72.404 0 25 18 2 0 0 0 0.37918 1 14031 14031 53.576 15.424 1 2522500 10244 1697 6581 6585 10343 10343 -0.09083650541242605 EEASANYF 8 Unmodified _EEASANYF_ 0 0 0 ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22 ENST00000520132.1_1_5:150071315-150073858:-|nuORF ENST00000520132.1_1_5:150071315-150073858:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2497863769531 2 465.695615 929.376677 -0.1078 -5.0203E-05 0.23085 0.00010751 0.12305 5.7304E-05 465.6956281417847 75.775 0.69303 72.359 71.951 72.644 -3.4151 46 19 4 0 0 0 0.40947 1 14770 14770 49.669 27.922 1 4756300 10245 1697 6581 6585 10344 10344 -0.09083650541242605 EEASANYF 8 Unmodified _EEASANYF_ 0 0 0 ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22 ENST00000520132.1_1_5:150071315-150073858:-|nuORF ENST00000520132.1_1_5:150071315-150073858:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.4786987304688 1 930.383953 929.376677 0.097074 9.0316E-05 0.17501 0.00016283 0.27209 0.00025315 930.384109853991 75.694 0.62309 72.278 71.918 72.541 -3.4151 25 17 2 0 0 0 0.23259 1 14776 14776 67.344 20.423 1 3417900 10246 1697 6581 6585 10345 10345 -0.09083650541242605 EEASANYF 8 Unmodified _EEASANYF_ 0 0 0 ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22 ENST00000520132.1_1_5:150071315-150073858:-|nuORF ENST00000520132.1_1_5:150071315-150073858:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2502746582031 2 465.695615 929.376677 0.064992 3.0266E-05 0.14267 6.644E-05 0.20766 9.6707E-05 465.69550459454535 76.014 0.75547 72.292 71.931 72.686 -3.7227 42 21 3 0 0 0 0.37918 1 14417 14417 53.576 13.618 1 2996500 10247 1697 6581 6585 10346 10346 -0.09083650541242605 EEASANYF 8 Unmodified _EEASANYF_ 0 0 0 ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22 ENST00000520132.1_1_5:150071315-150073858:-|nuORF ENST00000520132.1_1_5:150071315-150073858:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 930.4848022460938 1 930.383953 929.376677 0.33835 0.0003148 0.085364 7.9421E-05 0.42372 0.00039422 930.3838186434787 76.005 0.58606 72.282 71.997 72.583 -3.7227 25 16 2 0 0 0 7.361E-11 1 14368 14368 128.37 64.803 1 2678900 10248 1697 6581 6585 10347 10347 -0.09083650541242605 EEASANYF 8 Unmodified _EEASANYF_ 0 0 0 ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22 ENST00000520132.1_1_5:150071315-150073858:-|nuORF ENST00000520132.1_1_5:150071315-150073858:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2508239746094 2 465.695615 929.376677 0.22171 0.00010325 -0.24601 -0.00011456 -0.024297 -1.1315E-05 465.6954424468879 75.88 0.85973 72.246 71.856 72.715 -3.6337 54 24 3 0 0 0 0.26367 1 14487 14487 63.563 16.642 1 3523700 10249 1697 6581 6585 10348 10348 -0.09083650541242605 EEASANYF 8 Unmodified _EEASANYF_ 0 0 0 ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22 ENST00000520132.1_1_5:150071315-150073858:-|nuORF ENST00000520132.1_1_5:150071315-150073858:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 930.4779663085938 1 930.383953 929.376677 0.35774 0.00033284 0.17672 0.00016441 0.53446 0.00049725 930.383991493657 75.901 0.75491 72.267 71.891 72.646 -3.6337 32 21 2 0 0 0 2.0925E-11 1 14427 14427 149.99 68.131 1 3526700 10250 1697 6581 6585 10349 10349 -0.09083650541242605 EEASIVQSV 9 Unmodified _EEASIVQSV_ 0 0 0 REV__ENST00000418116.6_1_11:18344284-18382305:+|nuORF REV__ENST00000418116.6_1_11:18344284-18382305:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24200439453125 2 481.245472 960.476391 0.25062 0.00012061 -0.096818 -4.6593E-05 0.1538 7.4018E-05 481.24536879287905 74.708 1.2207 71.114 70.71 71.931 -3.594 121 34 5 0 0 0 0.28819 1 14132 14132 32.305 2.4649 1 58496000 + 10251 15217 6582 6586 10350 10350 -0.005428329272717747 EEASKLPST 9 Unmodified _EEASKLPST_ 0 0 0 MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant;MED1|p.S1294Yfs*16|1|0.06|ENSG00000125686|chr17:39408340-39408341|-/T|frameshift_variant;ENSG00000125686|ENST00000300651|MED1 MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2457275390625 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 64.178 1 64.178 63.678 64.678 0 0 0 0 0.13613 1 12353 12353 32.305 1.6689 1 10252 3377 6583 6587 10351 10351 -0.0054283292729451205 EEASKLPST 9 Unmodified _EEASKLPST_ 0 0 0 MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant;MED1|p.S1294Yfs*16|1|0.06|ENSG00000125686|chr17:39408340-39408341|-/T|frameshift_variant;ENSG00000125686|ENST00000300651|MED1 MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2453918457031 2 481.245472 960.476391 0.33107 0.00015933 -0.67529 -0.00032498 -0.34421 -0.00016565 481.24511053279184 67.672 0.45659 64.176 63.89 64.346 -3.4965 14 12 2 0 0 0 0.28819 1 12714 12714 32.305 3.2239 1 1053500 10253 3377 6583 6587 10352 10352 -0.0054283292729451205 EEASKLPST 9 Unmodified _EEASKLPST_ 0 0 0 MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant;MED1|p.S1294Yfs*16|1|0.06|ENSG00000125686|chr17:39408340-39408341|-/T|frameshift_variant;ENSG00000125686|ENST00000300651|MED1 MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2446594238281 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 68.022 1 64.695 64.195 65.195 -3.3268 0 0 0 0.19721 1 12835 12835 24.021 0 1 10254 3377 6583 6587 10353 10353 -0.0054283292729451205 EEASSCSFEY 10 Unmodified _EEASSCSFEY_ 0 0 0 REV__ENSG00000145911|ENST00000274605|N4BP3 REV__ENSG00000145911|ENST00000274605|N4BP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3121948242188 2 576.213511 1150.41247 -0.023001 -1.3254E-05 3.6331 0.0020934 3.6101 0.0020802 576.2152285951776 76.551 0.52162 73.136 72.9 73.422 -3.4151 16 14 2 0 0 0 0.66352 1 14906 14906 32.305 22.232 1 1075100 + 10255 16861 6584 6588 10354 10354 -0.15671981146533653 EEASSCSFEY 10 Unmodified _EEASSCSFEY_ 0 0 0 REV__ENSG00000145911|ENST00000274605|N4BP3 REV__ENSG00000145911|ENST00000274605|N4BP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.213511 1150.41247 0.15171 8.7415E-05 3.5649 0.0020541 3.7166 0.0021415 576.2155165459619 76.801 0.39182 73.168 72.925 73.317 -3.6337 0.15047 -0.00013901 NaN 32.305 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2568800 + 10256 16861 6584 6588 -0.15671981146533653 EEASTLTPL 9 Unmodified _EEASTLTPL_ 0 0 0 REV__ENST00000594213.5_1_19:6380294-6381826:-|nuORF REV__ENST00000594213.5_1_19:6380294-6381826:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24932861328125 2 480.747847 959.481142 -0.031414 -1.5102E-05 -0.13444 -6.4631E-05 -0.16585 -7.9733E-05 480.747761915466 94.506 0.732 90.659 90.392 91.124 -3.847 30 20 3 0 0 0 0.44262 1 18143 18143 23.148 1.4018 1 2127800 + 10257 23364 6585 6589 10355 10355 -0.00021948784524283838 EEASTLTPL 9 Unmodified _EEASTLTPL_ 0 0 0 REV__ENST00000594213.5_1_19:6380294-6381826:-|nuORF REV__ENST00000594213.5_1_19:6380294-6381826:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24957275390625 2 480.747847 959.481142 -0.031414 -1.5102E-05 -0.13444 -6.4631E-05 -0.16585 -7.9733E-05 480.747761915466 94.506 0.732 90.659 90.392 91.124 -3.847 30 20 3 0 0 0 0.60698 1 18086 18086 30.225 8.4782 1 2127800 + 10258 23364 6585 6589 10356 10356 -0.00021948784524283838 EEATKHLE 8 Unmodified _EEATKHLE_ 0 0 0 nc|ENSG00000114416|P51114-3|FXR1;FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1;FXR1|p.K274Rfs*23|1|0.23|ENSG00000114416|chr3:180953776-180953776|A/-|frameshift_variant;FXR1|p.N300Mfs*8|1|0.11|ENSG00000114416|chr3:180957832-180957832|A/-|frameshift_variant;FXR2|p.P540Qfs*32|3|0.45|ENSG00000129245|chr17:7592804-7592804|G/-|frameshift_variant;ENSG00000129245|ENST00000250113|FXR2 nc|ENSG00000114416|P51114-3|FXR1 nc|ENSG00000114416|P51114-3|FXR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7377014160156 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 59.192 1 56.282 55.782 56.782 -2.9105 0 0 0 0.21323 1 11374 11374 14.582 0 1 10259 2788 6586 6590 10357 10357 -0.01843699724486214 EEATNILTA 9 Unmodified _EEATNILTA_ 0 0 0 ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENST00000480906.5_1_3:195057651-195163594:-|nuORF ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2452087402344 2 481.245472 960.476391 0.052431 2.5232E-05 -0.11694 -5.6277E-05 -0.064509 -3.1045E-05 481.24537947024936 84.781 0.80302 84.781 84.449 85.252 0 40 22 2 0 0 0 0.01604 3 16536 16536;16554;16585 96.285 46.352 1 6276600 10260 31 6587 6591 10358;10359;10360 10358 -0.005428329272831434 EEATNILTA 9 Unmodified _EEATNILTA_ 0 0 0 ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENST00000480906.5_1_3:195057651-195163594:-|nuORF ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24542236328125 2 481.245472 960.476391 -0.045872 -2.2076E-05 -0.034714 -1.6706E-05 -0.080586 -3.8782E-05 481.24539045910973 88.392 0.78774 84.599 84.195 84.983 -3.7926 52 21 3 0 0 0 0.01604 2 17284 17284;17331 96.285 46.352 1 6239100 10261 31 6587 6591 10361;10362 10361 -0.005428329272831434 EEATNILTA 9 Unmodified _EEATNILTA_ 0 0 0 ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENST00000480906.5_1_3:195057651-195163594:-|nuORF ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2449645996094 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 23.64 1 22.087 21.587 22.587 -1.5532 0 0 0 0.20155 1 4087 4087 23.148 6.2061 1 10262 31 6587 6591 10363 10363 -0.005428329272831434 EEATNILTA 9 Unmodified _EEATNILTA_ 0 0 0 ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENST00000480906.5_1_3:195057651-195163594:-|nuORF ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2452392578125 2 481.245472 960.476391 0.40994 0.00019728 -0.43537 -0.00020952 -0.025437 -1.2241E-05 481.2452004337273 88.679 0.85803 84.684 84.362 85.22 -3.9953 59 24 4 0 0 0 0.041554 4 16894 16848;16867;16894;16953 74.929 34.972 1 6495400 10263 31 6587 6591 10364;10365;10366;10367 10366 -0.005428329272831434 EEATNILTA 9 Unmodified _EEATNILTA_ 0 0 0 ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENST00000480906.5_1_3:195057651-195163594:-|nuORF ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.245361328125 2 481.245472 960.476391 0.13605 6.5476E-05 -0.089911 -4.3269E-05 0.046143 2.2206E-05 481.24532990242704 88.504 1.2586 84.754 84.361 85.619 -3.7501 65 35 3 0 0 0 0.001935 9 16929 16881;16884;16910;16927;16929;16932;16977;16980;17021 115.69 54.204 1 6461200 10264 31 6587 6591 10368;10369;10370;10371;10372;10373;10374;10375;10376 10372 -0.005428329272831434 EEAVGMPKP 9 Unmodified _EEAVGMPKP_ 0 0 0 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant;ARHGEF40|p.P1111Lfs*5|2|0.26|ENSG00000165801|chr14:21082320-21082320|C/-|frameshift_variant;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ARHGEF40|p.H1487Tfs*15|3|0.37|ENSG00000165801|chr14:21088033-21088033|C/-|frameshift_variant;ENSG00000165801|ENST00000298694|ARHGEF40 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72222900390625 2 479.239135 956.463718 -0.2591 -0.00012417 0.3793 0.00018178 0.1202 5.7605E-05 479.2392611981548 56.891 1.9889 56.891 55.766 57.755 0 97 56 3 0 0 0 0.31673 1 10883 10883 47.749 18.667 1 4769600 10265 214 6588 6592 10377 10377 -0.016255675911793332 EEAVGMPKP 9 Unmodified _EEAVGMPKP_ 0 0 0 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant;ARHGEF40|p.P1111Lfs*5|2|0.26|ENSG00000165801|chr14:21082320-21082320|C/-|frameshift_variant;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ARHGEF40|p.H1487Tfs*15|3|0.37|ENSG00000165801|chr14:21088033-21088033|C/-|frameshift_variant;ENSG00000165801|ENST00000298694|ARHGEF40 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72308349609375 2 479.239135 956.463718 -0.011501 -5.5118E-06 0.1869 8.9567E-05 0.17539 8.4056E-05 479.2391667214205 59.84 1.9195 56.907 55.762 57.681 -2.9333 105 54 3 0 0 0 0.31673 1 11555 11555 39.95 10.868 1 4857900 10266 214 6588 6592 10378 10378 -0.016255675911793332 EEAVGMPKP 9 Unmodified _EEAVGMPKP_ 0 0 0 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant;ARHGEF40|p.P1111Lfs*5|2|0.26|ENSG00000165801|chr14:21082320-21082320|C/-|frameshift_variant;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ARHGEF40|p.H1487Tfs*15|3|0.37|ENSG00000165801|chr14:21088033-21088033|C/-|frameshift_variant;ENSG00000165801|ENST00000298694|ARHGEF40 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.723388671875 2 479.239135 956.463718 0.092224 4.4197E-05 -0.082076 -3.9334E-05 0.010148 4.8632E-06 479.23903388626195 60.03 2.1326 56.716 55.854 57.987 -3.3139 122 60 4 0 0 0 0.23492 1 11204 11204 45.7 26.261 1 5693400 10267 214 6588 6592 10379 10379 -0.016255675911793332 EEAVGMPKP 9 Unmodified _EEAVGMPKP_ 0 0 0 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant;ARHGEF40|p.P1111Lfs*5|2|0.26|ENSG00000165801|chr14:21082320-21082320|C/-|frameshift_variant;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ARHGEF40|p.H1487Tfs*15|3|0.37|ENSG00000165801|chr14:21088033-21088033|C/-|frameshift_variant;ENSG00000165801|ENST00000298694|ARHGEF40 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.723388671875 2 479.239135 956.463718 0.12613 6.0446E-05 -0.042915 -2.0567E-05 0.083213 3.9879E-05 479.23903834717476 59.902 2.0378 56.679 56.047 58.085 -3.2237 109 57 3 0 0 0 0.23492 1 11248 11248 53.833 28.433 1 5098900 10268 214 6588 6592 10380 10380 -0.016255675911793332 EEAVHEDS 8 Unmodified _EEAVHEDS_ 0 0 0 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2222900390625 2 458.188154 914.361755 NaN NaN NaN NaN NaN NaN NaN 45.662 1 42.796 42.296 43.296 -2.8666 0 0 0 0.21323 1 8292 8292 14.582 2.9414 1 10269 12368 6589 6593 10381 10381 -0.09885142409234504 EEAVKWIS 8 Unmodified _EEAVKWIS_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2529296875 2 481.2531 960.491647 -0.33436 -0.00016091 0.65815 0.00031674 0.32379 0.00015582 481.25333464501205 66.996 0.67012 66.996 66.698 67.368 0 30 18 2 0 0 0 0.49114 1 12954 12954 28.487 1.6032 1 4930600 10270 2678 6590 6594 10382 10382 0.00982078660570096 EEAVKWIS 8 Unmodified _EEAVKWIS_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7655944824219 2 481.2531 960.491647 0.39635 0.00019075 -0.075564 -3.6365E-05 0.32079 0.00015438 481.2530639502723 70.497 0.60397 66.917 66.66 67.264 -3.5798 30 16 2 0 0 0 0.60622 1 13315 13315 21.747 2.4897 1 3549700 10271 2678 6590 6594 10383 10383 0.00982078660570096 EEAVPLPWPG 10 Unmodified _EEAVPLPWPG_ 0 0 0 ENST00000568731.1_1_16:50334743-50335713:+|nuORF ENST00000568731.1_1_16:50334743-50335713:+|nuORF ENST00000568731.1_1_16:50334743-50335713:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7775268554688 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 20.056 1 18.731 18.231 19.231 -1.3251 0 0 0 0.22588 1 3095 3095 10.824 1.4765 1 10272 11396 6591 6595 10384 10384 0.0013803672336507589 EEAVRVDNY 9 Unmodified _EEAVRVDNY_ 0 0 0 REV__tr|U7T256|U7T256_FUSNUReplicativeDNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00477PE=3SV=1 REV__tr|U7T256|U7T256_FUSNUReplicativeDNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00477PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7816162109375 2 547.759278 1093.504 NaN NaN NaN NaN NaN NaN NaN 66.937 1 63.828 63.328 64.328 -3.1086 0 0 0 0.23508 1 12978 12978 11.64 0 1 + 10273 25308 6592 6596 10385 10385 -0.03900929667042874 EEAVSKWL 8 Unmodified _EEAVSKWL_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES;HMCES|p.T234Sfs*32|1|0.17|ENSG00000183624|chr3:129302014-129302015|-/G|frameshift_variant;HMCES|p.K276Rfs*59|1|0.32|ENSG00000183624|chr3:129302137-129302137|A/-|frameshift_variant ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2530212402344 2 481.2531 960.491647 -0.33436 -0.00016091 0.65815 0.00031674 0.32379 0.00015582 481.25333464501205 66.996 0.67012 66.996 66.698 67.368 0 30 18 2 0 0 0 0.23433 1 12908 12908 42.095 4.1206 1 4930600 10274 6858 6593 6597 10386 10386 0.00982078660570096 EEAVSKWL 8 Unmodified _EEAVSKWL_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES;HMCES|p.T234Sfs*32|1|0.17|ENSG00000183624|chr3:129302014-129302015|-/G|frameshift_variant;HMCES|p.K276Rfs*59|1|0.32|ENSG00000183624|chr3:129302137-129302137|A/-|frameshift_variant ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2425537109375 2 481.2531 960.491647 -0.065773 -3.1654E-05 0.43948 0.0002115 0.3737 0.00017985 481.2533288834899 70.197 0.63531 66.948 66.615 67.25 -3.2492 32 17 2 0 0 0 0.40222 2 13634 13613;13634 32.305 3.0875 1 4295500 10275 6858 6593 6597 10387;10388 10388 0.00982078660570096 EEAVSKWL 8 Unmodified _EEAVSKWL_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES;HMCES|p.T234Sfs*32|1|0.17|ENSG00000183624|chr3:129302014-129302015|-/G|frameshift_variant;HMCES|p.K276Rfs*59|1|0.32|ENSG00000183624|chr3:129302137-129302137|A/-|frameshift_variant ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2530822753906 2 481.2531 960.491647 0.39635 0.00019075 -0.075564 -3.6365E-05 0.32079 0.00015438 481.2530639502723 70.497 0.60397 66.917 66.66 67.264 -3.5798 30 16 2 0 0 0 0.19607 3 13264 13258;13264;13295 46.021 16.942 1 3549700 10276 6858 6593 6597 10389;10390;10391 10390 0.00982078660570096 EEAVSKWL 8 Unmodified _EEAVSKWL_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES;HMCES|p.T234Sfs*32|1|0.17|ENSG00000183624|chr3:129302014-129302015|-/G|frameshift_variant;HMCES|p.K276Rfs*59|1|0.32|ENSG00000183624|chr3:129302137-129302137|A/-|frameshift_variant ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2531433105469 2 481.2531 960.491647 0.28221 0.00013581 0.1207 5.8085E-05 0.40291 0.0001939 481.25311837758886 70.408 0.77477 66.941 66.569 67.343 -3.467 34 21 2 0 0 0 0.40222 2 13327 13281;13327 32.305 3.6117 1 2969000 10277 6858 6593 6597 10392;10393 10393 0.00982078660570096 EEAVVMIIY 9 Unmodified _EEAVVMIIY_ 0 0 0 ENST00000518676.5_1_19:16830879-16830987:+|nuORF ENST00000518676.5_1_19:16830879-16830987:+|nuORF ENST00000518676.5_1_19:16830879-16830987:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2655029296875 2 533.778093 1065.54163 0.042193 2.2522E-05 3.5059 0.0018714 3.5481 0.0018939 533.7803306895037 54.657 0.49174 54.657 54.386 54.877 0 19 13 2 0 0 0 0.79204 1 10447 10447 16.942 0 1 553210 10278 10808 6594 6598 10394 10394 0.01148445274225196 EEAYICRKA 9 Unmodified _EEAYICRKA_ 0 0 0 REV__tr|U7SNG5|U7SNG5_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01747PE=3SV=1 REV__tr|U7SNG5|U7SNG5_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01747PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2677001953125 2 541.768591 1081.52263 0.37963 0.00020567 -0.039749 -2.1535E-05 0.33988 0.00018413 541.7685251237522 30.239 0.62946 28.346 28.067 28.697 -1.8928 22 17 2 0 0 0 0.8319 1 5227 5227 7.9102 2.1497 1 552720 + 10279 24979 6595 6599 10395 10395 -0.014870912968490302 EEAYTTEH 8 Unmodified _EEAYTTEH_ 0 0 0 ENST00000526364.1_1_11:125488416-125491330:+|nuORF;nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A ENST00000526364.1_1_11:125488416-125491330:+|nuORF ENST00000526364.1_1_11:125488416-125491330:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2578125 2 490.203804 978.393055 NaN NaN NaN NaN NaN NaN NaN 37.454 1 34.985 34.485 35.485 -2.4688 0 0 0 0.17894 1 6917 6917 32.117 0 1 10280 3884 6596 6600 10396 10396 -0.09700569375138457 EECCYHGKI 9 Unmodified _EECCYHGKI_ 0 0 0 ENST00000346872.7_2_17:37920768-37920894:-|nuORF ENST00000346872.7_2_17:37920768-37920894:-|nuORF ENST00000346872.7_2_17:37920768-37920894:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2763671875 2 541.225702 1080.43685 NaN NaN NaN NaN NaN NaN NaN 130.33 1 125.69 125.19 126.19 -4.6359 0 0 0 0.23508 1 25686 25686 4.756 1.4747 1 10281 8909 6597 6601 10397 10397 -0.10014999473992248 EECDDCDS 8 Unmodified _EECDDCDS_ 0 0 0 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.E2016Rfs*13|1|0.27|ENSG00000053747|chr18:23901164-23901164|G/-|frameshift_variant;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2385559082031 2 458.120765 914.226977 NaN NaN NaN NaN NaN NaN NaN 83.722 1 79.843 79.343 80.343 -3.8784 0 0 0 0.21486 1 15905 15905 0.79363 0.79363 1 10282 1257 6598 6602 10398 10398 -0.23356706937659055 EECDQNWY 8 Unmodified _EECDQNWY_ 0 0 0 nc|ENSG00000177885|P62993-2|GRB2;ENSG00000177885|ENST00000316804|GRB2 nc|ENSG00000177885|P62993-2|GRB2 nc|ENSG00000177885|P62993-2|GRB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7930908203125 2 543.695289 1085.37602 NaN NaN NaN NaN NaN NaN NaN 41.968 1 39.249 38.749 39.749 -2.7191 0 0 0 0.21486 1 7842 7842 10.183 4.423 1 10283 6546 6599 6603 10399 10399 -0.1632481325259505 EECDSAEHY 9 Unmodified _EECDSAEHY_ 0 0 0 ENST00000451923.1_1_X:107084119-107084203:+|nuORF ENST00000451923.1_1_X:107084119-107084203:+|nuORF ENST00000451923.1_1_X:107084119-107084203:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2745971679688 2 541.690204 1081.36585 NaN NaN NaN NaN NaN NaN NaN 35.112 1 32.836 32.336 33.336 -2.2766 0 0 0 0.23508 1 6166 6166 8.5933 0.68312 1 10284 9983 6600 6604 10400 10400 -0.1715742097783277 EECLRLAE 8 Unmodified _EECLRLAE_ 0 0 0 REV__ENST00000522858.5_2_5:153418167-153418275:-|nuORF REV__ENST00000522858.5_2_5:153418167-153418275:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7855224609375 2 481.734217 961.453881 NaN NaN NaN NaN NaN NaN NaN 44.911 1 42.121 41.621 42.621 -2.79 0 0 0 0.21323 1 8450 8450 14.582 1.0738 1 + 10285 22662 6601 6605 10401 10401 -0.028387555965537103 EECRPCFY 8 Unmodified _EECRPCFY_ 0 0 0 ENST00000507224.5_1_4:151682940-151682997:-|nuORF ENST00000507224.5_1_4:151682940-151682997:-|nuORF ENST00000507224.5_1_4:151682940-151682997:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7019653320312 2 523.707145 1045.39974 0.54017 0.00028289 0.70777 0.00037066 1.2479 0.00065355 523.7075061431649 78.049 0.5948 78.049 77.667 78.262 0 28 16 2 0 0 0 0.77935 1 15107 15107 5.2307 0.90143 1 2609800 10286 10694 6602 6606 10402 10402 -0.12114671019776324 EECSMDETPY 10 Unmodified _EECSMDETPY_ 0 0 0 PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant;ENSG00000204569|ENST00000376511|PPP1R10 PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3017578125 2 602.212654 1202.41076 NaN NaN NaN NaN NaN NaN NaN 125.94 1 121.17 120.67 121.67 -4.7681 0 0 0 0.22588 1 24170 24170 3.9444 0.3479 1 10287 7589 6603 6607 10403 10403 -0.1823535822679787 EECSSSPMNC 10 Unmodified _EECSSSPMNC_ 0 0 0 REV__nc|ENSG00000090376|Q9Y616-2|IRAK3 REV__nc|ENSG00000090376|Q9Y616-2|IRAK3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7955932617188 2 543.680467 1085.34638 NaN NaN NaN NaN NaN NaN NaN 55.135 1 55.135 54.635 55.635 0 0 0 0 0.22588 1 10519 10519 6.7232 2.3939 1 + 10288 14546 6604 6608 10404 10404 -0.19287836584589968 EECVEISL 8 Unmodified _EECVEISL_ 0 0 0 REV__CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5296936035156 2 461.215326 920.416099 NaN NaN NaN NaN NaN NaN NaN 138.94 1 133.99 133.49 134.49 -4.952 0 0 0 0.21486 1 26725 26725 8.5933 1.304 1 + 10289 13440;18462 6605 6609 10405 10405 -0.04729266582012315 EECVQKGRDP 10 Unmodified _EECVQKGRDP_ 0 0 0 SEMA3G|p.R107Q|1|0.11|ENSG00000010319|chr3:52442578-52442578|C/T|missense_variant SEMA3G|p.R107Q|1|0.11|ENSG00000010319|chr3:52442578-52442578|C/T|missense_variant SEMA3G|p.R107Q|1|0.11|ENSG00000010319|chr3:52442578-52442578|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7119445800781 3 387.517 1159.52917 0.21785 8.4422E-05 0.20052 7.7705E-05 0.41837 0.00016213 387.51702655255735 45.811 4.7767 45.811 43.467 48.244 0 327 136 4 0 0 0 0.91149 1 8279 8279 8.4443 3.9154 1 12190000 10290 25653 6606 6610 10406 10406 -0.044211981361286234 EECYCEGTDC 10 Unmodified _EECYCEGTDC_ 0 0 0 REV__ENSG00000120332|ENST00000239462|TNN REV__ENSG00000120332|ENST00000239462|TNN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32373046875 2 576.169932 1150.32531 NaN NaN NaN NaN NaN NaN NaN 32.878 1 30.731 30.231 31.231 -2.1468 0 0 0 0.22588 1 5719 5719 1.6526 0.17072 1 + 10291 15619 6607 6611 10407 10407 -0.24383846684122545 EECYNLDCY 9 Unmodified _EECYNLDCY_ 0 0 0 REV__ENSG00000180210|ENST00000311907|F2 REV__ENSG00000180210|ENST00000311907|F2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3225708007812 2 576.204632 1150.39471 NaN NaN NaN NaN NaN NaN NaN 74.689 1 71.325 70.825 71.825 -3.3643 0 0 0 0.19691 1 14572 14572 0.073264 0 1 + + 10292 13515 6608 6612 10408 10408 -0.1744701967304536 EECYNLDCY 9 Unmodified _EECYNLDCY_ 0 0 0 REV__ENSG00000180210|ENST00000311907|F2 REV__ENSG00000180210|ENST00000311907|F2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3225708007812 2 576.204632 1150.39471 NaN NaN NaN NaN NaN NaN NaN 74.705 1 71.341 70.841 71.841 -3.3643 0 0 0 0.23508 1 14574 14574 8.5933 0 1 + + 10293 13515 6608 6612 10409 10409 -0.1744701967304536 EEDDDEDSGA 10 Unmodified _EEDDDEDSGA_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2808227539062 2 541.175637 1080.33672 0.34484 0.00018662 1.5511 0.00083942 1.8959 0.001026 541.1763551321233 36.376 0.45511 36.376 36.213 36.668 0 20 12 2 0 0 0 0.91149 1 6741 6741 7.2892 2.5332 1 1276800 10294 1581 6609 6613 10410 10410 -0.20023286793116313 EEDDDVPDL 9 Unmodified _EEDDDVPDL_ 0 0 0 ENSG00000134717|ENST00000313334|BTF3L4;nc|ENSG00000134717|Q96K17-2|BTF3L4 ENSG00000134717|ENST00000313334|BTF3L4 ENSG00000134717|ENST00000313334|BTF3L4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7012329101562 2 523.711659 1045.40876 NaN NaN NaN NaN NaN NaN NaN 149.11 1 149.11 148.61 149.61 0 0 0 0 0.22251 1 29850 29850 16.942 4.4107 1 10295 3870 6610 6614 10411 10411 -0.11212327648740938 EEDDEDFLA 9 Unmodified _EEDDEDFLA_ 0 0 0 ENSG00000205903|ENST00000382252|ZNF316 ENSG00000205903|ENST00000382252|ZNF316 ENSG00000205903|ENST00000382252|ZNF316 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2838745117188 2 541.711659 1081.40876 -0.011866 -6.4277E-06 -2.0396 -0.0011049 -2.0515 -0.0011113 541.713284123319 83.009 0.64994 79.31 79.006 79.656 -3.6985 62 18 5 0 0 0 0.77732 1 15863 15863 12.532 0 1 4116000 10296 7660 6611 6615 10412 10412 -0.12868327648743616 EEDDGEITED 10 Unmodified _EEDDGEITED_ 0 0 0 TRIM33|p.V1101I|1|0.13|ENSG00000197323|chr1:114397731-114397731|C/T|missense_variant TRIM33|p.V1101I|1|0.13|ENSG00000197323|chr1:114397731-114397731|C/T|missense_variant TRIM33|p.V1101I|1|0.13|ENSG00000197323|chr1:114397731-114397731|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 384.16485595703125 3 384.478934 1150.41497 -0.042491 -1.6337E-05 -0.46718 -0.00017962 -0.50967 -0.00019596 384.47880663635686 80.17 0.76469 76.365 76.037 76.801 -3.8048 55 21 4 0 0 0 1.1216 1 15241 15241 0.26539 0.20152 1 2418100 10297 26519 6612 6616 10413 10413 -0.1542185420792066 EEDDYDDDF 9 Unmodified _EEDDYDDDF_ 0 0 0 ENST00000441488.6_1_11:67925157-67938746:-|nuORF;ENSG00000110066|ENST00000304363|KMT5B ENST00000441488.6_1_11:67925157-67938746:-|nuORF ENST00000441488.6_1_11:67925157-67938746:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7097473144531 3 388.128013 1161.36221 -0.22857 -8.8716E-05 -0.54531 -0.00021165 -0.77388 -0.00030037 388.4619394976254 12.637 0.65204 12.637 12.378 13.03 0 24 18 2 0 0 0 0.88478 1 1770 1770 0 0 1 484560 10298 2558 6613 6617 10414 10414 -0.21201812270714981 EEDDYPSENY 10 Unmodified _EEDDYPSENY_ 0 0 0 MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7554321289062 2 630.73058 1259.44661 NaN NaN NaN NaN NaN NaN NaN 158.16 1 153.37 152.87 153.87 -4.7952 0 0 0 2.8426 1 31450 31450 4.6586 1.3478 1 10299 12143 6614 6618 10415 10415 -0.17273861453941208 EEDEAGGRFVA 11 Unmodified _EEDEAGGRFVA_ 0 0 0 ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1 ENSG00000070010|ENST00000263202|UFD1 ENSG00000070010|ENST00000263202|UFD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.267333984375 2 590.267467 1178.52038 0.68977 0.00040715 -0.75519 -0.00044576 -0.065417 -3.8614E-05 590.2670061197151 46.556 0.59156 46.556 46.208 46.799 0 34 16 3 0 0 0 0.35631 3 8770 8724;8770;8817 51.488 25.22 1 3002400 10300 1423 6615 6619 10416;10417;10418 10417 -0.06173848500930035 EEDEAGGRFVA 11 Unmodified _EEDEAGGRFVA_ 0 0 0 ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1 ENSG00000070010|ENST00000263202|UFD1 ENSG00000070010|ENST00000263202|UFD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2674560546875 2 590.267467 1178.52038 0.34556 0.00020398 -0.31376 -0.0001852 0.031807 1.8775E-05 590.2671676351373 49.573 0.59696 46.692 46.344 46.941 -2.8811 36 16 3 0 0 0 0.09818 1 9415 9415 78.06 45.275 1 4672800 10301 1423 6615 6619 10419 10419 -0.06173848500930035 EEDEAGGRFVA 11 Unmodified _EEDEAGGRFVA_ 0 0 0 ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1 ENSG00000070010|ENST00000263202|UFD1 ENSG00000070010|ENST00000263202|UFD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2684326171875 2 590.267467 1178.52038 0.44417 0.00026218 -0.19519 -0.00011521 0.24898 0.00014697 590.2670765070181 49.669 0.5934 46.67 46.344 46.938 -2.999 39 16 3 0 0 0 0.59457 1 9043 9043 18.373 8.2992 1 4525800 10302 1423 6615 6619 10420 10420 -0.06173848500930035 EEDEAGGRFVA 11 Unmodified _EEDEAGGRFVA_ 0 0 0 ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1 ENSG00000070010|ENST00000263202|UFD1 ENSG00000070010|ENST00000263202|UFD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2671508789062 2 590.267467 1178.52038 -0.064263 -3.7932E-05 -0.038557 -2.2759E-05 -0.10282 -6.0691E-05 590.2673706301721 49.698 0.5968 46.692 46.31 46.907 -3.0068 36 16 3 0 0 0 0.05731 3 9110 9069;9110;9154 84.522 51.737 1 3495900 10303 1423 6615 6619 10421;10422;10423 10422 -0.06173848500930035 EEDEEDDPQA 10 Unmodified _EEDEEDDPQA_ 0 0 0 REV__nc|ENSG00000146112|Q6NYC8-4|PPP1R18 REV__nc|ENSG00000146112|Q6NYC8-4|PPP1R18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.272216796875 2 588.712387 1175.41022 0.13539 7.9705E-05 -1.1571 -0.00068117 -1.0217 -0.00060147 588.711675392112 87.136 0.99065 83.407 82.977 83.968 -3.7289 77 27 4 0 0 0 0.74994 1 16642 16642 5.7319 0 1 28259000 + 10304 16870 6616 6620 10424 10424 -0.17046738350654778 EEDEEEEDVG 10 Unmodified _EEDEEEEDVG_ 0 0 0 REV__nc|ENSG00000136938|Q92688-2|ANP32B REV__nc|ENSG00000136938|Q92688-2|ANP32B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2701416015625 2 590.21222 1178.40989 0.48386 0.00028558 0.31984 0.00018877 0.8037 0.00047435 590.2123959015047 33.283 1.0034 30.966 30.593 31.596 -2.3175 74 28 4 0 0 0 0.744 2 6075 6075;6163 6.7232 6.7232 1 5100800 + 10305 16365 6617 6621 10425;10426 10425 -0.17218158070500067 EEDEEEEDVG 10 Unmodified _EEDEEEEDVG_ 0 0 0 REV__nc|ENSG00000136938|Q92688-2|ANP32B REV__nc|ENSG00000136938|Q92688-2|ANP32B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2484130859375 2 590.21222 1178.40989 0.64525 0.00038083 0.36328 0.00021441 1.0085 0.00059525 590.2123760779588 33.101 0.97827 30.955 30.655 31.634 -2.1468 68 27 3 0 0 0 0.744 1 5865 5865 6.7232 2.7788 1 5083200 + 10306 16365 6617 6621 10427 10427 -0.17218158070500067 EEDEEEEDVG 10 Unmodified _EEDEEEEDVG_ 0 0 0 REV__nc|ENSG00000136938|Q92688-2|ANP32B REV__nc|ENSG00000136938|Q92688-2|ANP32B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 590.21222 1178.40989 0.37178 0.00021943 0.80339 0.00047417 1.1752 0.0006936 590.2126462479879 30.828 0.90164 30.828 30.485 31.386 0 -0.10953 0.00033556 NaN 6.7232 65 25 3 NaN NaN NaN NaN 0 NaN NaN 0 7767700 + 10307 16365 6617 6621 -0.17218158070500067 EEDEETCH 8 Unmodified _EEDEETCH_ 0 0 0 REV__nc|ENSG00000163605|Q9NY27-2|PPP4R2 REV__nc|ENSG00000163605|Q9NY27-2|PPP4R2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.1111145019531 3 331.115161 990.323655 NaN NaN NaN NaN NaN NaN NaN 179.4 1 174.53 174.03 175.03 -4.868 0 0 0 0.21486 1 35734 35734 0.45834 0 1 + 10308 17588 6618 6622 10428 10428 -0.17189396386208955 EEDEFIVEGL 10 Unmodified _EEDEFIVEGL_ 0 0 0 ENSG00000101265|ENST00000379400|RASSF2;RASSF2|p.P80Lfs*20|1|0.4|ENSG00000101265|chr20:4795863-4795863|G/-|frameshift_variant ENSG00000101265|ENST00000379400|RASSF2 ENSG00000101265|ENST00000379400|RASSF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2766723632812 2 590.274426 1178.5343 NaN NaN NaN NaN NaN NaN NaN 50.041 1 47.042 46.542 47.542 -2.999 0 0 0 0.22535 1 9157 9157 20.454 2.3073 1 10309 2052 6619 6623 10429 10429 -0.047826157925328516 EEDEGCCC 8 Unmodified _EEDEGCCC_ 0 0 0 nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF;ENSG00000197136|ENST00000355703|PCNX3 nc|ENSG00000197136|Q9H6A9-3|PCNX3 nc|ENSG00000197136|Q9H6A9-3|PCNX3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 444.1136169433594 2 444.114429 886.214304 NaN NaN NaN NaN NaN NaN NaN 167.67 1 162.88 162.38 163.38 -4.7898 0 0 0 0.21486 1 33845 33845 0 0 1 10310 7333 6620 6624 10430 10430 -0.2333544160154588 EEDEYDYDYE 10 Unmodified _EEDEYDYDYE_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 457.18634033203125 3 457.15786 1368.45175 -0.10758 -4.9181E-05 0.52549 0.00024023 0.41791 0.00019105 457.1580439837025 44.682 0.17784 41.935 41.815 41.993 -2.7475 6 4 2 0 0 0 0.53414 1 8084 8084 0 0 1 362320 10311 4161 6621 6625 10431 10431 -0.21773602381972523 EEDFEILS 8 Unmodified _EEDFEILS_ 0 0 0 nc|ENSG00000101844|Q8WYN0-3|ATG4A;nc|ENSG00000101844|Q8WYN0-2|ATG4A;nc|ENSG00000101844|Q8WYN0-5|ATG4A;ENSG00000101844|ENST00000372232|ATG4A;ENST00000489247.1_1_X:107393350-107396939:+|nuORF nc|ENSG00000101844|Q8WYN0-3|ATG4A nc|ENSG00000101844|Q8WYN0-3|ATG4A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.7724914550781 2 491.224205 980.433857 NaN NaN NaN NaN NaN NaN NaN 91.942 1 88.134 87.634 88.634 -3.8083 0 0 0 0.23025 1 17610 17610 1.7423 0 1 10312 2088 6622 6626 10432 10432 -0.05714228055512649 EEDGPREF 8 Unmodified _EEDGPREF_ 0 0 0 ENSG00000204851|ENST00000599531|PNMA8B ENSG00000204851|ENST00000599531|PNMA8B ENSG00000204851|ENST00000599531|PNMA8B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2653503417969 2 489.711796 977.40904 0.60492 0.00029623 -0.29254 -0.00014326 0.31237 0.00015297 489.7115387291466 118.67 1.0002 114.06 113.74 114.74 -4.6106 40 27 2 0 0 0 0.99494 1 22751 22751 13.508 0.97634 1 1249100 10313 7615 6623 6627 10433 10433 -0.08056863138233439 EEDHVQTVS 9 Unmodified _EEDHVQTVS_ 0 0 0 ENST00000482967.5_1_20:31946851-31989286:-|nuORF;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000482967.5_1_20:31946851-31989286:-|nuORF ENST00000482967.5_1_20:31946851-31989286:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26513671875 2 522.235635 1042.45672 0.328 0.00017129 -1.1522 -0.0006017 -0.82416 -0.0004304 522.2351393104286 39.222 0.45027 39.222 39.059 39.509 0 22 12 3 0 0 0 0.34411 1 7262 7262 29.082 9.8246 1 1757500 10314 2062 6624 6628 10434 10434 -0.06281208938048621 EEDHVQTVS 9 Unmodified _EEDHVQTVS_ 0 0 0 ENST00000482967.5_1_20:31946851-31989286:-|nuORF;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000482967.5_1_20:31946851-31989286:-|nuORF ENST00000482967.5_1_20:31946851-31989286:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 522.235635 1042.45672 0.08991 4.6954E-05 -0.72721 -0.00037978 -0.6373 -0.00033282 522.2351292144142 41.655 0.34344 39.049 38.911 39.254 -2.606 -0.086693 0.00017946 NaN 29.082 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 834750 10315 2062 6624 6628 -0.06281208938048621 EEDIEQYRY 9 Unmodified _EEDIEQYRY_ 0 0 0 tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7791137695312 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 116.88 1 112.3 111.8 112.8 -4.5815 0 0 0 0.23508 1 22425 22425 8.5933 1.304 1 10316 25951 6625 6629 10435 10435 -0.07632981703750374 EEDILRNKA 9 Unmodified _EEDILRNKA_ 0 0 0 ENST00000490846.5_1_1:70758067-70779428:-|nuORF;nc|ENSG00000118454|Q8N6S4-2|ANKRD13C;ENSG00000118454|ENST00000370944|ANKRD13C ENST00000490846.5_1_1:70758067-70779428:-|nuORF ENST00000490846.5_1_1:70758067-70779428:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7922973632812 2 544.290745 1086.56694 0.018864 1.0268E-05 -1.7173 -0.00093474 -1.6985 -0.00092447 544.2896099086712 47.128 0.51036 44.186 44 44.511 -2.9421 22 14 2 0 0 0 0.76271 1 8618 8618 20.454 2.3073 1 5978100 10317 3035 6626 6630 10436 10436 0.027116361209891693 EEDKNSYTP 9 Unmodified _EEDKNSYTP_ 0 0 0 ENSG00000130477|ENST00000519716|UNC13A;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;ENSG00000198722|ENST00000635942|UNC13B ENSG00000130477|ENST00000519716|UNC13A;ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2823486328125 2 541.735468 1081.45638 0.31873 0.00017267 0.48419 0.0002623 0.80292 0.00043497 541.7357549866877 21.919 0.62465 21.919 21.669 22.293 0 41 17 3 0 0 0 0.067773 1 3702 3702 65.235 27.261 1 2116700 10318 3610;7479 6627 6631 10437 10437 -0.08108628657896588 EEDKNSYTP 9 Unmodified _EEDKNSYTP_ 0 0 0 ENSG00000130477|ENST00000519716|UNC13A;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;ENSG00000198722|ENST00000635942|UNC13B ENSG00000130477|ENST00000519716|UNC13A;ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.28173828125 2 541.735468 1081.45638 -0.31457 -0.00017041 0.73899 0.00040034 0.42442 0.00022993 541.7359243894648 23.613 0.5584 21.824 21.526 22.084 -1.7886 27 15 2 0 0 0 0.31714 1 3777 3777 30.637 3.7529 1 1123300 10319 3610;7479 6627 6631 10438 10438 -0.08108628657896588 EEDLKKGFE 9 Unmodified _EEDLKKGFE_ 0 0 0 tr|U7SNI1|U7SNI1_FUSNUGAFdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01767PE=4SV=1 tr|U7SNI1|U7SNI1_FUSNUGAFdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01767PE=4SV=1 tr|U7SNI1|U7SNI1_FUSNUGAFdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01767PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7720336914062 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 91.194 1 87.385 86.885 87.885 -3.8083 0 0 0 0.21469 1 17456 17456 19.257 0 1 10320 26026 6628 6632 10439 10439 -0.013868748644881634 EEDLMGDCDCD 11 Unmodified _EEDLMGDCDCD_ 0 0 0 REV__ENSG00000103966|ENST00000220325|EHD4 REV__ENSG00000103966|ENST00000220325|EHD4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7752685546875 2 622.691229 1243.3679 NaN NaN NaN NaN NaN NaN NaN 115.42 1 115.42 114.92 115.92 0 0 0 0 0.23634 1 22718 22718 3.2813 2.823 1 + 10321 14900 6629 6633 10440 10440 -0.24404496346528504 EEDNPYTPT 9 Unmodified _EEDNPYTPT_ 0 0 0 nc|ENSG00000095637|Q9BX66-6|SORBS1;SORBS1|p.A1135Qfs*17|1|0.24|ENSG00000095637|chr10:95336757-95336757|C/-|frameshift_variant;ENSG00000095637|ENST00000371247|SORBS1 nc|ENSG00000095637|Q9BX66-6|SORBS1 nc|ENSG00000095637|Q9BX66-6|SORBS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2701416015625 2 533.222194 1064.42983 0.23577 0.00012572 -0.171 -9.1183E-05 0.064771 3.4537E-05 533.222059698753 39.57 0.55379 39.57 39.235 39.789 0 28 15 2 0 0 0 0.71527 1 7358 7358 19.257 6.7254 1 1443500 10322 1866 6630 6634 10441 10441 -0.09980317549229767 EEDPAHAF 8 Unmodified _EEDPAHAF_ 0 0 0 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant;ENSG00000170145|ENST00000304987|SIK2 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2245788574219 2 458.195782 914.377011 0.50904 0.00023324 -0.65364 -0.00029949 -0.1446 -6.6254E-05 458.19539626575323 49.329 0.84678 49.329 48.806 49.653 0 46 23 3 0 0 0 0.15268 2 9308 9261;9308 52.693 33.254 1 1921900 10323 6041 6631 6635 10442;10443 10443 -0.08360230821381265 EEDPAHAF 8 Unmodified _EEDPAHAF_ 0 0 0 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant;ENSG00000170145|ENST00000304987|SIK2 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2274475097656 2 458.195782 914.377011 -0.27868 -0.00012769 0.37403 0.00017138 0.095353 4.369E-05 458.1958895322018 52.168 0.65722 49.285 48.9 49.558 -2.8824 44 18 3 0 0 0 0.45129 1 9873 9873 30.198 15.617 1 2109700 10324 6041 6631 6635 10444 10444 -0.08360230821381265 EEDPAHAF 8 Unmodified _EEDPAHAF_ 0 0 0 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant;ENSG00000170145|ENST00000304987|SIK2 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2218322753906 2 458.195782 914.377011 -0.0041064 -1.8815E-06 0.034897 1.599E-05 0.030791 1.4108E-05 458.1956952661189 52.399 0.91132 49.312 48.777 49.689 -3.0876 53 25 3 0 0 0 0.081626 3 9629 9575;9629;9675 75.128 48.787 1 1832300 10325 6041 6631 6635 10445;10446;10447 10446 -0.08360230821381265 EEDPAHAF 8 Unmodified _EEDPAHAF_ 0 0 0 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant;ENSG00000170145|ENST00000304987|SIK2 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2406311035156 2 458.195782 914.377011 -0.05906 -2.7061E-05 0.1372 6.2866E-05 0.078142 3.5804E-05 458.19578166680014 52.269 0.83085 49.174 48.789 49.62 -3.0954 47 23 3 0 0 0 0.098504 2 9674 9603;9674 63.394 43.955 1 2070300 10326 6041 6631 6635 10448;10449 10449 -0.08360230821381265 EEDPCACESL 10 Unmodified _EEDPCACESL_ 0 0 0 ENSG00000162510|ENST00000373765|MATN1;ENST00000494561.1_1_1:31186977-31188978:-|nuORF ENSG00000162510|ENST00000373765|MATN1 ENSG00000162510|ENST00000373765|MATN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7813110351562 2 548.202089 1094.38963 0.12178 6.676E-05 0.96798 0.00053065 1.0898 0.00059741 548.2024922308342 68.483 0.86635 65.303 64.932 65.798 -3.1796 51 24 3 0 0 0 0.83242 1 13289 13289 14.838 7.549 1 11118000 10327 5337 6632 6636 10450 10450 -0.15379323535671574 EEDPWATVANE 11 Unmodified _EEDPWATVANE_ 0 0 0 tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1 tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1 tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7615356445312 2 630.772582 1259.53061 0.74492 0.00046987 -0.022343 -1.4094E-05 0.72257 0.00045578 630.7725522947426 52.899 0.5162 50.015 49.625 50.141 -2.8837 21 14 2 0 0 0 0.7906 1 10015 10015 4.897 0 1 1765700 10328 26432 6633 6637 10451 10451 -0.08877285566381943 EEDQGHFPS 9 Unmodified _EEDQGHFPS_ 0 0 0 REV__nc|ENSG00000065675|Q04759-3|PRKCQ REV__nc|ENSG00000065675|Q04759-3|PRKCQ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6890869140625 2 523.214703 1044.41485 -0.15508 -8.1138E-05 -2.7857 -0.0014575 -2.9408 -0.0015387 523.7127544176245 123.64 0.11377 118.91 118.85 118.97 -4.731 4 2 2 0 0 0 0.46598 1 23754 23754 0.40827 0 1 536700 + 10329 14192 6634 6638 10452 10452 -0.10557764626560129 EEDQQDSL 8 Unmodified _EEDQQDSL_ 0 0 0 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.765380859375 2 482.198719 962.382884 0.3873 0.00018675 -1.2999 -0.00062683 -0.91264 -0.00044008 482.19803663467184 71.023 0.5546 67.443 67.087 67.641 -3.5798 20 15 2 0 0 0 0.93477 1 13364 13364 12.532 0 1 1268300 + 10330 24010 6635 6639 10453 10453 -0.09981177100371497 EEDQQMELE 9 Unmodified _EEDQQMELE_ 0 0 0 REV__ENSG00000145388|ENST00000388822|METTL14 REV__ENSG00000145388|ENST00000388822|METTL14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3223266601562 2 575.732068 1149.44958 0.036015 2.0735E-05 2.9673 0.0017084 3.0034 0.0017291 575.7336585405396 23.323 0.28631 21.869 21.749 22.035 -1.4535 11 7 2 0 0 0 0.48644 1 3739 3739 20.454 1.1966 1 988770 + 10331 16835 6636 6640 10454 10454 -0.11916309600769637 EEDQRMHH 8 Unmodified _EEDQRMHH_ 0 0 0 REV__ENSG00000198917|ENST00000361256|SPOUT1 REV__ENSG00000198917|ENST00000361256|SPOUT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2804565429688 2 541.227622 1080.44069 NaN NaN NaN NaN NaN NaN NaN 57.971 1 57.971 57.471 58.471 0 0 0 0 0.21486 1 11091 11091 10.183 1.5901 1 + 10332 19482 6637 6641 10455 10455 -0.09631193655945935 EEDQYCPY 8 Unmodified _EEDQYCPY_ 0 0 0 REV__ENSG00000118492|ENST00000397944|ADGB REV__ENSG00000118492|ENST00000397944|ADGB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6930541992188 2 523.692215 1045.36988 NaN NaN NaN NaN NaN NaN NaN 46.61 1 43.744 43.244 44.244 -2.8666 0 0 0 0.21486 1 8487 8487 2.8892 0 1 + 10333 15555 6638 6642 10456 10456 -0.15099331484134382 EEDQYGMPL 9 Unmodified _EEDQYGMPL_ 0 0 0 nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2752685546875 2 541.228965 1080.44338 NaN NaN NaN NaN NaN NaN NaN 121.93 1 117.24 116.74 117.74 -4.6873 0 0 0 0.23508 1 23406 23406 13.508 5.5977 1 10334 2342 6639 6643 10457 10457 -0.09362783041638068 EEDRFSLEA 9 Unmodified _EEDRFSLEA_ 0 0 0 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.79296875 2 548.251286 1094.48802 0.69759 0.00038245 -0.49687 -0.00027241 0.20072 0.00011004 548.2510821184845 80.631 0.63039 80.631 80.28 80.911 0 29 17 2 0 0 0 0.70212 1 15678 15678 27.629 10.516 1 1412000 10335 2539 6640 6644 10458 10458 -0.05544635903947892 EEDRFSLEA 9 Unmodified _EEDRFSLEA_ 0 0 0 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7799072265625 2 548.251286 1094.48802 0.19657 0.00010777 0.4981 0.00027308 0.69467 0.00038085 548.2516508250841 84.401 0.59061 80.492 80.283 80.874 -3.9093 31 16 2 0 0 0 0.70212 1 16070 16070 27.629 4.8925 1 1990900 10336 2539 6640 6644 10459 10459 -0.05544635903947892 EEDRFSLEA 9 Unmodified _EEDRFSLEA_ 0 0 0 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.769287109375 2 548.251286 1094.48802 0.044231 2.425E-05 1.0773 0.00059063 1.1215 0.00061488 548.2519366927323 84.38 0.98865 80.668 80.026 81.015 -3.7117 41 27 2 0 0 0 0.70212 1 16121 16121 27.629 4.9707 1 1799100 10337 2539 6640 6644 10460 10460 -0.05544635903947892 EEDRKARYL 9 Unmodified _EEDRKARYL_ 0 0 0 ENST00000541602.5_1_11:113934022-114057819:+|nuORF;ZBTB16|p.G496Wfs*27|1|0.28|ENSG00000109906|chr11:114242197-114242198|-/T|frameshift_variant;ENSG00000109906|ENST00000335953|ZBTB16;nc|ENSG00000109906|Q05516-2|ZBTB16 ENST00000541602.5_1_11:113934022-114057819:+|nuORF ENST00000541602.5_1_11:113934022-114057819:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2592163085938 2 590.309469 1178.60439 NaN NaN NaN NaN NaN NaN NaN 99.693 1 95.396 94.896 95.896 -4.297 0 0 0 0.23508 1 19058 19058 11.64 0.14559 1 10338 11079 6641 6645 10461 10461 0.022227273866064934 EEDSEDYSDD 10 Unmodified _EEDSEDYSDD_ 0 0 0 REV__nc|ENSG00000131149|Q14687-2|GSE1 REV__nc|ENSG00000131149|Q14687-2|GSE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2777709960938 2 602.194027 1202.3735 NaN NaN NaN NaN NaN NaN NaN 106.18 1 106.18 105.68 106.68 0 0 0 0 0.22588 1 20871 20871 6.2058 3.923 1 + 10339 16057 6642 6646 10462 10462 -0.2195903496722167 EEDSKRAMQ 9 Unmodified _EEDSKRAMQ_ 0 0 0 ENST00000581582.1_1_19:40788275-40788344:-|nuORF ENST00000581582.1_1_19:40788275-40788344:-|nuORF ENST00000581582.1_1_19:40788275-40788344:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7803955078125 2 547.250763 1092.48697 0.23516 0.00012869 1.1093 0.00060707 1.3445 0.00073576 547.2513819612201 64.807 0.66372 61.349 60.909 61.573 -3.4581 32 18 2 0 0 0 0.77734 1 12149 12149 19.257 5.3509 1 1878500 10340 11505 6643 6647 10463 10463 -0.055571735445028025 EEDSVSIIA 9 Unmodified _EEDSVSIIA_ 0 0 0 nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C;ANKRD36C|p.F1404Lfs*4|1|0.33|ENSG00000174501|chr2:95856049-95856049|A/-|frameshift_variant;nc|ENSG00000174501|Q5JPF3-3|ANKRD36C;ENST00000534304.5_1_2:96525807-96601268:-|nuORF nc|ENSG00000174501|Q5JPF3|ANKRD36C nc|ENSG00000174501|Q5JPF3|ANKRD36C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7712097167969 2 481.73748 961.460406 0.066277 3.1928E-05 1.3331 0.00064223 1.3994 0.00067415 481.738099284195 26.865 0.48061 26.865 26.635 27.115 0 28 13 3 0 0 0 0.25702 1 4685 4685 34.102 12.356 1 3586900 10341 6353 6644 6648 10464 10464 -0.02186539164176793 EEDSVSIIA 9 Unmodified _EEDSVSIIA_ 0 0 0 nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C;ANKRD36C|p.F1404Lfs*4|1|0.33|ENSG00000174501|chr2:95856049-95856049|A/-|frameshift_variant;nc|ENSG00000174501|Q5JPF3-3|ANKRD36C;ENST00000534304.5_1_2:96525807-96601268:-|nuORF nc|ENSG00000174501|Q5JPF3|ANKRD36C nc|ENSG00000174501|Q5JPF3|ANKRD36C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.236572265625 2 481.73748 961.460406 0.30487 0.00014687 1.165 0.00056125 1.4699 0.00070811 481.7379673211498 28.325 0.48763 26.57 26.353 26.841 -1.7552 31 13 3 0 0 0 0.49001 1 4775 4775 28.487 8.0332 1 5450000 10342 6353 6644 6648 10465 10465 -0.02186539164176793 EEDTRIRPA 9 Unmodified _EEDTRIRPA_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7941284179688 2 543.780544 1085.54654 -0.023335 -1.2689E-05 -0.10307 -5.6048E-05 -0.12641 -6.8737E-05 543.7802177671382 43.561 0.63787 40.795 40.685 41.323 -2.7661 21 17 2 0 0 0 0.48644 1 7895 7895 20.454 0.039092 1 893470 + 10343 13287 6645 6649 10466 10466 0.0071846546118194965 EEDVFHLHKLC 11 Unmodified _EEDVFHLHKLC_ 0 0 0 REV__ENST00000606723.2_1_6:25998476-25998707:+|nuORF REV__ENST00000606723.2_1_6:25998476-25998707:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2279968261719 3 457.223817 1368.64962 -0.51997 -0.00023774 0.62876 0.00028748 0.10879 4.9743E-05 457.2232148215881 17.058 0.45062 15.785 15.487 15.938 -1.2722 21 12 4 0 0 0 0.80759 1 2495 2495 2.6312 0.19645 1 989210 + 10344 23462 6646 6650 10467 10467 -0.01995790142518672 EEDVFHLHKLC 11 Unmodified _EEDVFHLHKLC_ 0 0 0 REV__ENST00000606723.2_1_6:25998476-25998707:+|nuORF REV__ENST00000606723.2_1_6:25998476-25998707:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 457.223817 1368.64962 -0.51997 -0.00023774 0.62876 0.00028748 0.10879 4.9743E-05 457.2232148215881 17.058 0.45062 15.785 15.487 15.938 -1.2722 0.052689 -0.00053247 NaN 2.6312 21 12 4 NaN NaN NaN NaN 0 NaN NaN 0 989210 + 10345 23462 6646 6650 -0.01995790142518672 EEDVFHLHKLC 11 Unmodified _EEDVFHLHKLC_ 0 0 0 REV__ENST00000606723.2_1_6:25998476-25998707:+|nuORF REV__ENST00000606723.2_1_6:25998476-25998707:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 457.223817 1368.64962 -1.3633 -0.00062334 1.8254 0.00083461 0.46207 0.00021127 457.2239017990874 17.195 0.59646 15.68 15.243 15.84 -1.5148 -0.052689 0.0011089 NaN 2.6312 22 16 3 NaN NaN NaN NaN 0 NaN NaN 0 593740 + 10346 23462 6646 6650 -0.01995790142518672 EEDVNGKEF 9 Unmodified _EEDVNGKEF_ 0 0 0 ENST00000370068.5_1_1:107683518-107690770:+|nuORF ENST00000370068.5_1_1:107683518-107690770:+|nuORF ENST00000370068.5_1_1:107683518-107690770:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2750854492188 2 533.738011 1065.46147 0.38698 0.00020655 -0.30913 -0.000165 0.077846 4.1549E-05 533.7378149732999 49.439 0.69594 46.44 46.172 46.868 -2.999 31 19 2 0 0 0 0.69192 1 9000 9000 26.884 26.884 1 1335000 10347 9134 6647 6651 10468 10468 -0.06864324795287757 EEEAEPPRE 9 Unmodified _EEEAEPPRE_ 0 0 0 ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;HDAC4|p.M902Wfs*55|2|0.45|ENSG00000068024|chr2:239081127-239081127|G/-|frameshift_variant;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000068024|P56524-2|HDAC4 ENST00000535493.5_1_2:240016681-240219867:-|nuORF ENST00000535493.5_1_2:240016681-240219867:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7947387695312 2 543.240918 1084.46728 0.15397 8.3642E-05 1.4096 0.00076575 1.5636 0.0008494 543.2417452945517 89.994 0.71486 86.135 85.761 86.476 -3.8595 36 19 2 0 0 0 0.16619 1 17602 17602 41.84 3.6641 1 2661300 10348 1398 6648 6652 10469 10469 -0.07157226283607088 EEEAEPPRE 9 Unmodified _EEEAEPPRE_ 0 0 0 ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;HDAC4|p.M902Wfs*55|2|0.45|ENSG00000068024|chr2:239081127-239081127|G/-|frameshift_variant;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000068024|P56524-2|HDAC4 ENST00000535493.5_1_2:240016681-240219867:-|nuORF ENST00000535493.5_1_2:240016681-240219867:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.240918 1084.46728 0.26392 0.00014337 1.2618 0.00068548 1.5258 0.00082886 543.2417233072582 89.952 0.73138 86.174 85.771 86.502 -3.7779 0.013987 4.7316E-05 NaN 41.84 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1780800 10349 1398 6648 6652 -0.07157226283607088 EEEAKVGGP 9 Unmodified _EEEAKVGGP_ 0 0 0 REV__ENST00000564731.5_1_16:46761123-46772038:-|nuORF REV__ENST00000564731.5_1_16:46761123-46772038:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2256164550781 2 458.224539 914.434526 -0.012695 -5.8172E-06 0.41594 0.00019059 0.40324 0.00018478 458.22490999706287 50.622 0.51848 47.577 47.356 47.875 -3.0453 21 14 2 0 0 0 0.38188 2 9258 9258;9288 26.884 0 1 503700 + 10350 16596 6649 6653 10470;10471 10470 -0.0261138861579866 EEEAPELDL 9 Unmodified _EEEAPELDL_ 0 0 0 ENSG00000136378|ENST00000388820|ADAMTS7 ENSG00000136378|ENST00000388820|ADAMTS7 ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2731323242188 2 522.740219 1043.46589 -0.29031 -0.00015176 -2.8877 -0.0015095 -3.178 -0.0016613 522.7370179969195 88.88 0.60607 85.087 84.698 85.304 -3.7926 32 16 3 0 0 0 0.67531 1 17391 17391 7.9102 0 1 1360200 10351 4007 6650 6654 10472 10472 -0.05410860372376192 EEEAPPPGP 9 Unmodified _EEEAPPPGP_ 0 0 0 ENST00000285383.6_1_7:6895119-6895377:-|nuORF ENST00000285383.6_1_7:6895119-6895377:-|nuORF ENST00000285383.6_1_7:6895119-6895377:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5395202636719 2 461.711265 921.407977 NaN NaN NaN NaN NaN NaN NaN 31.223 1 29.106 28.606 29.606 -2.1167 0 0 0 0.20155 1 5660 5660 23.148 9.6405 1 10352 8456 6651 6655 10473 10473 -0.05587077507141203 EEEAPPPGP 9 Unmodified _EEEAPPPGP_ 0 0 0 ENST00000285383.6_1_7:6895119-6895377:-|nuORF ENST00000285383.6_1_7:6895119-6895377:-|nuORF ENST00000285383.6_1_7:6895119-6895377:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5383605957031 2 461.711265 921.407977 NaN NaN NaN NaN NaN NaN NaN 30.954 1 28.928 28.428 29.428 -2.0264 0 0 0 0.21408 1 5326 5326 19.439 5.9311 1 10353 8456 6651 6655 10474 10474 -0.05587077507141203 EEEAPPPGP 9 Unmodified _EEEAPPPGP_ 0 0 0 ENST00000285383.6_1_7:6895119-6895377:-|nuORF ENST00000285383.6_1_7:6895119-6895377:-|nuORF ENST00000285383.6_1_7:6895119-6895377:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.52520751953125 2 461.711265 921.407977 NaN NaN NaN NaN NaN NaN NaN 31.129 1 29.102 28.602 29.602 -2.0264 0 0 0 0.23411 1 5362 5362 13.508 0 1 10354 8456 6651 6655 10475 10475 -0.05587077507141203 EEEAPPPGP 9 Unmodified _EEEAPPPGP_ 0 0 0 ENST00000285383.6_1_7:6895119-6895377:-|nuORF ENST00000285383.6_1_7:6895119-6895377:-|nuORF ENST00000285383.6_1_7:6895119-6895377:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.54364013671875 2 461.711265 921.407977 NaN NaN NaN NaN NaN NaN NaN 31.334 1 29.308 28.808 29.808 -2.0264 0 0 0 0.23411 1 5405 5405 13.508 4.1604 1 10355 8456 6651 6655 10476 10476 -0.05587077507141203 EEEAPPPGP 9 Unmodified _EEEAPPPGP_ 0 0 0 ENST00000285383.6_1_7:6895119-6895377:-|nuORF ENST00000285383.6_1_7:6895119-6895377:-|nuORF ENST00000285383.6_1_7:6895119-6895377:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5226745605469 2 461.711265 921.407977 NaN NaN NaN NaN NaN NaN NaN 31.184 1 29.036 28.536 29.536 -2.1483 0 0 0 0.21848 1 5364 5364 18.135 5.6034 1 10356 8456 6651 6655 10477 10477 -0.05587077507141203 EEEAPSLCS 9 Unmodified _EEEAPSLCS_ 0 0 0 REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.1340026855469 3 322.135785 963.385527 NaN NaN NaN NaN NaN NaN NaN 105.16 1 100.94 100.44 101.44 -4.2183 0 0 0 0.23508 1 20690 20690 1.1933 0.12188 1 + 10357 18459 6652 6656 10478 10478 -0.09763044967075984 EEEAPSLCS 9 Unmodified _EEEAPSLCS_ 0 0 0 REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.1282653808594 3 322.135785 963.385527 NaN NaN NaN NaN NaN NaN NaN 105.11 1 100.73 100.23 101.23 -4.3764 0 0 0 0.23508 1 20147 20147 1.1933 0.12188 1 + 10358 18459 6652 6656 10479 10479 -0.09763044967075984 EEEASAVSTAA 11 Unmodified _EEEASAVSTAA_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.281005859375 2 532.740751 1063.46695 0.34039 0.00018134 -3.4499 -0.0018379 -3.1095 -0.0016566 532.7386276112236 42.613 0.17869 39.962 39.811 39.989 -2.651 6 4 2 0 0 0 0.59903 1 7646 7646 18.146 3.5647 1 910930 10359 2020 6653 6657 10480 10480 -0.0622464600346575 EEEATRGK 8 Unmodified _EEEATRGK_ 0 0 0 REV__PLCB1|p.S523Ifs*5|1|0.33|ENSG00000182621|chr20:8722400-8722401|-/A|frameshift_variant REV__PLCB1|p.S523Ifs*5|1|0.33|ENSG00000182621|chr20:8722400-8722401|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2264404296875 2 460.227613 918.440674 NaN NaN NaN NaN NaN NaN NaN 51.127 1 48.075 47.575 48.575 -3.0517 0 0 0 0.21486 1 9414 9414 14.582 0.67564 1 + 10360 18791 6654 6658 10481 10481 -0.021808703842793875 EEEAVGGLGP 10 Unmodified _EEEAVGGLGP_ 0 0 0 nc|nan|Q8NAV2-2|C8orf58;ENSG00000241852|ENST00000289989|C8orf58 nc|nan|Q8NAV2-2|C8orf58 nc|nan|Q8NAV2-2|C8orf58 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7380065917969 2 479.229822 956.445091 -0.027751 -1.3299E-05 -0.65695 -0.00031483 -0.6847 -0.00032813 479.2293134007548 30.516 0.49595 30.516 30.164 30.66 0 20 13 2 0 0 0 0.77872 1 5499 5499 26.884 2.2098 1 957930 10361 7859 6655 6659 10482 10482 -0.03487405961357126 EEEDDEERRQK 11 Unmodified _EEEDDEERRQK_ 0 0 0 REV__CFAP43|p.H955R|1|0.16|ENSG00000197748|chr10:104166663-104166663|T/C|missense_variant REV__CFAP43|p.H955R|1|0.16|ENSG00000197748|chr10:104166663-104166663|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 731.7597045898438 2 731.823866 1461.63318 NaN NaN NaN NaN NaN NaN NaN 11.661 1 10.757 10.257 11.257 -0.90401 0 0 0 0.22632 1 1561 1561 0 0 1 + 10362 13387 6656 6660 10483 10483 -0.07917244565601322 EEEDDNNNN 9 Unmodified _EEEDDNNNN_ 0 0 0 ENSG00000084731|ENST00000264712|KIF3C ENSG00000084731|ENST00000264712|KIF3C ENSG00000084731|ENST00000264712|KIF3C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7935180664062 2 546.689246 1091.36394 -0.0026103 -1.427E-06 -1.3732 -0.00075073 -1.3758 -0.00075216 546.6882356095382 48.835 1.0007 45.829 45.415 46.416 -3.0068 102 28 5 0 0 0 0.79297 1 8945 8945 2.0598 1.2661 1 5025200 10363 1670 6657 6661 10484 10484 -0.17808758462092555 EEEDPAMKP 9 Unmodified _EEEDPAMKP_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6852416992188 2 523.228965 1044.44338 0.22368 0.00011704 -0.3209 -0.00016791 -0.097218 -5.0867E-05 523.2288720686755 29.583 1.9143 29.583 28.845 30.759 0 142 54 5 0 0 0 0.02633 1 5283 5283 85.642 33.373 1 8551300 10364 2216 6658 6662 10485 10485 -0.0770678304163539 EEEDRDGHTWD 11 Unmodified _EEEDRDGHTWD_ 0 0 0 nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF;nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;NLRP2|p.N1038Tfs*4|2|0.38|ENSG00000022556|chr19:55000816-55000816|A/-|frameshift_variant;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2 nc|ENSG00000022556|Q9NX02-3|NLRP2 nc|ENSG00000022556|Q9NX02-3|NLRP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 694.7720947265625 2 694.771102 1387.52765 NaN NaN NaN NaN NaN NaN NaN 7.1623 1 6.1177 5.6177 6.6177 -1.0446 0 0 0 0.23698 1 586 586 0 0 1 10365 1128 6659 6663 10486 10486 -0.15061160691197983 EEEDVLIGHY 10 Unmodified _EEEDVLIGHY_ 0 0 0 REV__ENST00000506157.1_1_4:2889441-2900342:+|nuORF REV__ENST00000506157.1_1_4:2889441-2900342:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2778930664062 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 48.763 1 45.894 45.394 46.394 -2.869 0 0 0 2.8426 1 9228 9228 0.043787 0 1 + 10366 22486 6660 6664 10487 10487 -0.047637936983846885 EEEEAARGRR 10 Unmodified _EEEEAARGRR_ 0 0 0 nc|ENSG00000105619|P0C1Z6-2|TFPT;ENSG00000105619|ENST00000391759|TFPT nc|ENSG00000105619|P0C1Z6-2|TFPT nc|ENSG00000105619|P0C1Z6-2|TFPT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.29443359375 2 601.797257 1201.57996 0.27392 0.00016485 -0.35004 -0.00021065 -0.07612 -4.5809E-05 601.7971207405293 14.266 0.27612 14.266 14.109 14.386 0 16 7 3 0 0 0 0.75765 1 2102 2102 1.3295 0.87119 1 7813100 10367 2323 6661 6665 10488 10488 -0.012765327669285398 EEEEDDDY 8 Unmodified _EEEEDDDY_ 0 0 0 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.E1112K|1|0.49|ENSG00000198589|chr4:150852376-150852376|C/T|missense_variant;CLEC17A|p.E53D|1|0.12|ENSG00000187912|chr19:14587651-14587651|G/T|missense_variant;nc|ENSG00000187912|Q6ZS10-2|CLEC17A;nc|ENSG00000187912|Q6ZS10-3|CLEC17A;ENSG00000187912|ENST00000417570|CLEC17A;nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;nc|ENSG00000100722|Q6PJT7-10|ZC3H14 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2617797851562 2 522.169824 1042.32509 NaN NaN NaN NaN NaN NaN NaN 85.453 1 85.453 84.953 85.953 0 0 0 0 0.2396 1 16678 16678 0.12286 0 1 10368 12082;2008 6662 6666 10489 10489 -0.19437483816454915 EEEEDEQKEP 10 Unmodified _EEEEDEQKEP_ 0 0 0 nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A nc|ENSG00000103978|Q8NBN3-3|TMEM87A nc|ENSG00000103978|Q8NBN3-3|TMEM87A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7796630859375 2 631.256962 1260.49937 NaN NaN NaN NaN NaN NaN NaN 94.048 1 90.204 89.704 90.704 -3.844 0 0 0 0.22588 1 18036 18036 6.7232 0.99131 1 10369 2212 6663 6667 10490 10490 -0.120459033911402 EEEEDHPH 8 Unmodified _EEEEDHPH_ 0 0 0 REV__nc|ENSG00000243967|Q86XG9|NBPF5P REV__nc|ENSG00000243967|Q86XG9|NBPF5P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 341.803955078125 3 341.133432 1020.37847 0.06191 2.1119E-05 0.79353 0.0002707 0.85544 0.00029182 341.1341863509672 54.544 1.3661 51.408 50.835 52.201 -3.1352 82 38 3 0 0 0 8448 1 9988 9988 3.2813 0 1 8421300 + 10370 19009 6664 6668 10491 10491 -0.1309064152328574 EEEEEDEEL 9 Unmodified _EEEEEDEEL_ 0 0 0 REV__KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;REV__ENSG00000151461|ENST00000357604|UPF2 REV__KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 575.6500244140625 2 575.717138 1149.41972 NaN NaN NaN NaN NaN NaN NaN 163.8 1 158.74 158.24 159.24 -5.0648 0 0 0 0.16473 1 31898 31898 1.2148 0 1 + 10371 16214;17067 6665 6669 10492 10492 -0.14900970065127694 EEEEEECF 8 Unmodified _EEEEEECF_ 0 0 0 REV__ENST00000518735.1_1_5:153405944-153406840:-|nuORF REV__ENST00000518735.1_1_5:153405944-153406840:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2711181640625 2 522.179137 1042.34372 NaN NaN NaN NaN NaN NaN NaN 84.596 1 84.596 84.096 85.096 0 0 0 0 0.23711 1 16503 16503 0.12286 0 1 + 10372 14113 6666 6670 10493 10493 -0.17575645446254384 EEEEEEDDE 9 Unmodified _EEEEEEDDE_ 0 0 0 nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;PRDM2|p.E278D|1|0.25|ENSG00000116731|chr1:13778629-13778629|A/T|missense_variant;ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant;nc|ENSG00000225830|P0DP91|ERCC6;ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;ENSG00000159335|ENST00000309083|PTMS;ENSG00000158806|ENST00000518119|NPM2;ENST00000466653.1_1_1:235392530-235490234:-|nuORF;sp|P06726|PP71_HCMVAProteinpp71OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL82PE=1SV=2;ACIN1|p.A447Lfs*19|5|0.26|ENSG00000100813|chr14:23080170-23080170|C/-|frameshift_variant;ARID4B|p.N432Mfs*8|1|0.26|ENSG00000054267|chr1:235220414-235220414|T/-|frameshift_variant;sp|F5HBC6|PP71_HCMVMProteinpp71OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL82PE=3SV=1;nc|ENSG00000054267|Q4LE39-3|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ARID4B|p.T939Rfs*2|2|0.22|ENSG00000054267|chr1:235182104-235182104|T/-|frameshift_variant;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-2|ARID4B;ARID4B|p.N659Kfs*3|1|0.25|ENSG00000054267|chr1:235194161-235194162|-/T|frameshift_variant;ENSG00000225830|ENST00000355832|ERCC6 nc|ENSG00000131149|Q14687-2|GSE1;REV__ENST00000580029.1_1_17:37790107-37792115:+|nuORF;REV__ENSG00000114853|ENST00000232974|ZBTB47;REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;REV__nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3;REV__ENSG00000161714|ENST00000619929|PLCD3;REV__ENSG00000115053|ENST00000322723|NCL;REV__CFAP43|p.H955R|1|0.16|ENSG00000197748|chr10:104166663-104166663|T/C|missense_variant;nc|ENSG00000054267|Q4LE39-3|ARID4B;REV__ENST00000505904.1_1_3:42700310-42703020:+|nuORF;REV__FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant;ENSG00000225830|ENST00000355832|ERCC6;REV__ENST00000472077.1_1_2:27604468-27607956:-|nuORF nc|ENSG00000054267|Q4LE39-3|ARID4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3145141601562 2 576.688578 1151.3626 0.19598 0.00011302 -3.3568 -0.0019358 -3.1608 -0.0018228 576.6869022995177 140.66 0.17595 135.68 135.53 135.71 -4.9877 5 4 2 0 0 0 0.87974 1 27075 27075 1.8442 0 1 1436700 10373 15391;1262;16088;17467;15399;3661;13386;15568;13387;22482;14834;7788;15415 6667 6671 10494 10494 -0.2070243734149244 EEEEEEDED 9 Unmodified _EEEEEEDED_ 0 0 0 ENST00000489369.5_1_9:676972-732786:+|nuORF;ENSG00000107104|ENST00000382297|KANK1;nc|ENSG00000107104|Q14678-2|KANK1;RTN4|p.K969Efs*10|1|0.04|ENSG00000115310|chr2:55025195-55025196|-/GGGAACATTCC|frameshift_variant;RTN4|p.V670Yfs*4|4|0.29|ENSG00000115310|chr2:55026092-55026092|T/-|frameshift_variant;RTN4|p.V670Sfs*9|1|0.38|ENSG00000115310|chr2:55026091-55026092|-/T|frameshift_variant;RTN4|p.R854Sfs*2|1|0.05|ENSG00000115310|chr2:55025537-55025538|-/AA|frameshift_variant;nc|ENSG00000115310|Q9NQC3-4|RTN4;ENST00000557952.5_1_14:24584803-24586206:+|nuORF;ENSG00000161956|ENST00000321337|SENP3;ENSG00000115310|ENST00000337526|RTN4;ABCC9|p.K1412Nfs*11|1|0.08|ENSG00000069431|chr12:21809931-21809931|T/-|frameshift_variant;nc|ENSG00000069431|O60706|ABCC9;ENSG00000112137|ENST00000332995|PHACTR1;ENSG00000100897|ENST00000446197|DCAF11;ENST00000511316.1_1_4:174253233-174253434:-|nuORF;ENST00000561016.5_1_14:24584803-24586603:+|nuORF;ENST00000396936.5_1_14:24584803-24587275:+|nuORF;ENST00000354485.5_1_9:732324-732786:+|nuORF;RTN4|p.L340Pfs*3|1|0.04|ENSG00000115310|chr2:55027080-55027081|-/G|frameshift_variant;nc|ENSG00000115310|Q9NQC3-2|RTN4;ENST00000560171.5_1_14:24584803-24587615:+|nuORF;nc|ENSG00000115310|Q9NQC3-5|RTN4;RTN4|p.K423Nfs*32|1|0.38|ENSG00000115310|chr2:55026830-55026830|T/-|frameshift_variant;SENP3|p.R443Gfs*15|1|0.38|ENSG00000161956|chr17:7566987-7566987|A/-|frameshift_variant;ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000112137|Q9C0D0-2|PHACTR1;ENSG00000105229|ENST00000262971|PIAS4;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000069431|ENST00000261200|ABCC9;nc|ENSG00000143401|Q9BTT0-3|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000054267|Q4LE39-3|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;nc|ENSG00000054267|Q4LE39-4|ARID4B;ARID4B|p.T939Rfs*2|2|0.22|ENSG00000054267|chr1:235182104-235182104|T/-|frameshift_variant;ARID4B|p.N659Kfs*3|1|0.25|ENSG00000054267|chr1:235194161-235194162|-/T|frameshift_variant;ENSG00000164104|ENST00000296503|HMGB2;ENSG00000185271|ENST00000636854|KLHL33;ENSG00000205903|ENST00000382252|ZNF316;ENST00000533654.5_1_1:150192985-150202975:-|nuORF ENST00000489369.5_1_9:676972-732786:+|nuORF;REV__HAP1|p.L341Rfs*3|1|0.55|ENSG00000173805|chr17:41731539-41731540|AA/-|frameshift_variant;nc|ENSG00000143401|Q9BTT0-3|ANP32E;nc|ENSG00000054267|Q4LE39-3|ARID4B;ENSG00000164104|ENST00000296503|HMGB2;ENSG00000185271|ENST00000636854|KLHL33;ENSG00000205903|ENST00000382252|ZNF316;ENST00000533654.5_1_1:150192985-150202975:-|nuORF;REV__ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000164104|ENST00000296503|HMGB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.310791015625 2 576.688578 1151.3626 NaN NaN NaN NaN NaN NaN NaN 40.02 1 37.471 36.971 37.971 -2.5491 0 0 0 0.23508 1 7448 7448 4.756 0 1 10374 1262;5508;2413;18375;4483;6976;7660;10998;14708 6668 6672 10495 10495 -0.2070243734149244 EEEEEEDGD 9 Unmodified _EEEEEEDGD_ 0 0 0 BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2725830078125 2 540.678013 1079.34147 0.37447 0.00020247 0.24207 0.00013088 0.61655 0.00033335 540.6777783822043 100.2 0.71342 96.207 95.871 96.584 -3.9895 40 20 2 0 0 0 0.84208 1 19213 19213 11.64 0 1 6006900 10375 327 6669 6673 10496 10496 -0.19502402650368822 EEEEEEEY 8 Unmodified _EEEEEEEY_ 0 0 0 ENST00000471706.1_1_1:145456639-145457200:-|nuORF;ENSG00000110917|ENST00000228506|MLEC;ENSG00000121851|ENST00000369314|POLR3GL;ENSG00000177432|ENST00000323061|NAP1L5;nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant;ENST00000595368.5_1_19:39936232-39948556:+|nuORF;ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant;MICAL3|p.R1499Gfs*106|7|0.44|ENSG00000243156|chr22:17818166-17818166|G/-|frameshift_variant;MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant REV__ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000083896|Q96MU7-2|YTHDC1;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000243156|ENST00000441493|MICAL3;REV__nc|ENSG00000128596|Q96JN2-2|CCDC136;REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF;REV__PRICKLE2|p.G512Afs*16|1|0.13|ENSG00000163637|chr3:64146955-64146955|C/-|frameshift_variant;REV__ENSG00000173905|ENST00000470487|GOLIM4 nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7739868164062 2 543.193299 1084.37204 0.36776 0.00019976 -0.36032 -0.00019573 0.007435 4.0386E-06 543.1925782116809 29.974 0.66184 29.974 29.61 30.272 0 46 18 4 0 0 0 0.76728 1 5361 5361 5.7604 0.028577 1 4210600 10376 13837;7250;7870;13281;18382;1660;15958;17595 6670 6674 10497 10497 -0.16676624265301143 EEEEEEGEN 9 Unmodified _EEEEEEGEN_ 0 0 0 REV__ENSG00000229474|ENST00000682850|PATL2 REV__ENSG00000229474|ENST00000682850|PATL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7763671875 2 547.19383 1092.37311 -0.03421 -1.8719E-05 0.15241 8.34E-05 0.1182 6.468E-05 547.1938456266342 23.343 0.35359 21.889 21.647 22 -1.4535 15 9 2 0 0 0 0.84208 1 3727 3727 7.2892 0 1 1032100 + 10377 19741 6671 6675 10498 10498 -0.16938409896397388 EEEEEESY 8 Unmodified _EEEEEESY_ 0 0 0 REV__ENSG00000186566|ENST00000591680|GPATCH8 REV__ENSG00000186566|ENST00000591680|GPATCH8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2822875976562 2 522.188017 1042.36148 NaN NaN NaN NaN NaN NaN NaN 84.779 1 80.869 80.369 81.369 -3.9093 0 0 0 0.20568 1 16117 16117 20.871 6.2895 1 + 10378 19037 6672 6676 10499 10499 -0.15800606919742677 EEEEELMEFPT 11 Unmodified _EEEEELMEFPT_ 0 0 0 REV__nc|ENSG00000198363|Q12797-7|ASPH REV__nc|ENSG00000198363|Q12797-7|ASPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.52593994140625 3 461.527119 1381.55953 -0.11556 -5.3336E-05 -0.25835 -0.00011924 -0.37391 -0.00017257 461.861027640312 61.831 0.37374 61.831 61.666 62.039 0 21 10 3 0 0 0 0.79196 1 11860 11860 4.7159 1.1289 1 1583100 + 10379 24234 6673 6677 10500 10500 -0.1159892905225206 EEEEELNDSS 10 Unmodified _EEEEELNDSS_ 0 0 0 nc|ENSG00000114631|Q9NZ53-2|PODXL2;ENSG00000114631|ENST00000342480|PODXL2 nc|ENSG00000114631|Q9NZ53-2|PODXL2 nc|ENSG00000114631|Q9NZ53-2|PODXL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2659912109375 2 590.728037 1179.44152 NaN NaN NaN NaN NaN NaN NaN 55.359 1 52.475 51.975 52.975 -2.8837 0 0 0 2.8426 1 10592 10592 0.063865 0 1 10380 2801 6674 6678 10501 10501 -0.14102165316558057 EEEEESEY 8 Unmodified _EEEEESEY_ 0 0 0 REV__ENSG00000068654|ENST00000263857|POLR1A REV__ENSG00000068654|ENST00000263857|POLR1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2810668945312 2 522.188017 1042.36148 NaN NaN NaN NaN NaN NaN NaN 88.608 1 84.613 84.113 85.113 -3.9953 0 0 0 0.21486 1 16881 16881 10.183 0 1 + 10381 14230 6675 6679 10502 10502 -0.15800606919742677 EEEEFNLTA 9 Unmodified _EEEEFNLTA_ 0 0 0 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant;F5|p.G1754Efs*13|1|0.41|ENSG00000198734|chr1:169529768-169529768|T/-|frameshift_variant;ENSG00000198734|ENST00000367797|F5 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2764282226562 2 541.237844 1080.46113 0.29337 0.00015878 0.48545 0.00026274 0.77882 0.00042153 541.238319187493 21.175 0.64338 21.175 20.885 21.528 0 29 18 2 0 0 0 0.18865 1 3550 3550 49.933 3.912 1 1516400 10382 7482 6676 6680 10503 10503 -0.07587744515149097 EEEEIVHMGNA 11 Unmodified _EEEEIVHMGNA_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;RYR3|p.N4580Mfs*8|1|0.37|ENSG00000198838|chr15:33853618-33853618|A/-|frameshift_variant;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.E3943Rfs*18|1|0.12|ENSG00000198838|chr15:33837800-33837801|-/A|frameshift_variant nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7521362304688 2 629.274435 1256.53432 0.74679 0.00046993 -0.90969 -0.00057244 -0.1629 -0.00010251 629.2740240768048 46.668 0.66536 46.668 46.315 46.98 0 43 18 3 0 0 0 0.78434 1 8739 8739 5.7319 0.43497 1 3018200 10383 7505 6677 6681 10504 10504 -0.08368939064143888 EEEEPPDHQYY 11 Unmodified _EEEEPPDHQYY_ 0 0 0 SHC1|p.V363Wfs*2|1|0.31|ENSG00000160691|chr1:154966414-154966414|C/-|frameshift_variant;nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1 SHC1|p.V363Wfs*2|1|0.31|ENSG00000160691|chr1:154966414-154966414|C/-|frameshift_variant SHC1|p.V363Wfs*2|1|0.31|ENSG00000160691|chr1:154966414-154966414|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73394775390625 3 479.193128 1434.55755 0.27143 0.00013007 0.77877 0.00037318 1.0502 0.00050325 479.5277055021818 66.594 0.65904 63.097 62.693 63.352 -3.4965 29 18 2 0 0 0 0.96214 1 12449 12449 1.4551 1.0006 1 2016400 10384 5261 6678 6682 10505 10505 -0.14234221745846298 EEEESAASSGS 11 Unmodified _EEEESAASSGS_ 0 0 0 REV__KIF7|p.R1260Afs*16|2|0.28|ENSG00000166813|chr15:89628673-89628673|G/-|frameshift_variant REV__KIF7|p.R1260Afs*16|2|0.28|ENSG00000166813|chr15:89628673-89628673|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2833251953125 2 541.709647 1081.40474 0.21297 0.00011537 2.5948 0.0014056 2.8078 0.001521 541.7122341191765 82.829 0.45562 79.221 78.921 79.377 -3.6079 29 12 3 0 0 0 0.76241 1 16178 16178 29.082 3.6823 1 2339100 + 10385 17873 6679 6683 10506 10506 -0.13270417142462065 EEEEVGAATF 10 Unmodified _EEEEVGAATF_ 0 0 0 NYAP1|p.R745Gfs*10|1|0.38|ENSG00000166924|chr7:100491057-100491057|C/-|frameshift_variant;ENSG00000166924|ENST00000300179|NYAP1;nc|ENSG00000166924|Q6ZVC0-2|NYAP1 NYAP1|p.R745Gfs*10|1|0.38|ENSG00000166924|chr7:100491057-100491057|C/-|frameshift_variant NYAP1|p.R745Gfs*10|1|0.38|ENSG00000166924|chr7:100491057-100491057|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2603149414062 2 541.237844 1080.46113 0.25106 0.00013589 -0.084491 -4.5729E-05 0.16657 9.0156E-05 541.2377268419363 74.246 1.4885 70.57 70.033 71.522 -3.6764 107 42 4 0 0 0 0.68338 1 14201 14201 20.454 20.454 1 27142000 10386 5765 6680 6684 10507 10507 -0.07587744515149097 EEEEVPLVV 9 Unmodified _EEEEVPLVV_ 0 0 0 SYNPO|p.S520Vfs*13|1|0.29|ENSG00000171992|chr5:150649095-150649095|C/-|frameshift_variant;SYNPO|p.T495Hfs*73|1|0.28|ENSG00000171992|chr5:150649019-150649020|-/G|frameshift_variant;SYNPO|p.E657Rfs*2|1|0.5|ENSG00000171992|chr5:150649508-150649508|G/-|frameshift_variant;nc|ENSG00000171992|Q8N3V7-3|SYNPO;SYNPO|p.V892Cfs*70|1|0.42|ENSG00000171992|chr5:150650212-150650212|C/-|frameshift_variant;ENSG00000171992|ENST00000307662|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO SYNPO|p.S520Vfs*13|1|0.29|ENSG00000171992|chr5:150649095-150649095|C/-|frameshift_variant SYNPO|p.S520Vfs*13|1|0.29|ENSG00000171992|chr5:150649095-150649095|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2587890625 2 521.76878 1041.52301 -0.21113 -0.00011016 0.91866 0.00047933 0.70753 0.00036917 521.7692481146607 33.237 0.76383 30.919 30.662 31.426 -2.3175 35 21 2 0 0 0 0.54354 1 6126 6126 16.942 5.302 1 2481100 10387 6188 6681 6685 10508 10508 0.003906069040112925 EEEEVPLVV 9 Unmodified _EEEEVPLVV_ 0 0 0 SYNPO|p.S520Vfs*13|1|0.29|ENSG00000171992|chr5:150649095-150649095|C/-|frameshift_variant;SYNPO|p.T495Hfs*73|1|0.28|ENSG00000171992|chr5:150649019-150649020|-/G|frameshift_variant;SYNPO|p.E657Rfs*2|1|0.5|ENSG00000171992|chr5:150649508-150649508|G/-|frameshift_variant;nc|ENSG00000171992|Q8N3V7-3|SYNPO;SYNPO|p.V892Cfs*70|1|0.42|ENSG00000171992|chr5:150650212-150650212|C/-|frameshift_variant;ENSG00000171992|ENST00000307662|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO SYNPO|p.S520Vfs*13|1|0.29|ENSG00000171992|chr5:150649095-150649095|C/-|frameshift_variant SYNPO|p.S520Vfs*13|1|0.29|ENSG00000171992|chr5:150649095-150649095|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2816162109375 2 521.76878 1041.52301 0.46869 0.00024455 0.5394 0.00028144 1.0081 0.00052599 521.7690443039177 33.138 0.68565 30.922 30.633 31.319 -2.2158 36 19 2 0 0 0 0.46541 2 5789 5789;5806 21.747 8.7042 1 2395100 10388 6188 6681 6685 10509;10510 10509 0.003906069040112925 EEEFISNTL 9 Unmodified _EEEFISNTL_ 0 0 0 ENSG00000108091|ENST00000263102|CCDC6;CCDC6|p.N172Lfs*8|1|0.03|ENSG00000108091|chr10:59832593-59832594|-/CTTTTAAGCTTTAA|frameshift_variant;CCDC6|p.E316Yfs*13|1|0.04|ENSG00000108091|chr10:59806980-59806981|-/TTTGGTA|frameshift_variant ENSG00000108091|ENST00000263102|CCDC6 ENSG00000108091|ENST00000263102|CCDC6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2605590820312 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 121.87 1 117.32 116.82 117.82 -4.5476 0 0 0 0.21848 1 24020 24020 18.135 2.2878 1 10389 2458 6682 6686 10511 10511 -0.03950867618414122 EEEFNWQTY 9 Unmodified _EEEFNWQTY_ 0 0 0 L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3 L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7763671875 2 623.256568 1244.49858 NaN NaN NaN NaN NaN NaN NaN 52.509 1 52.509 52.009 53.009 0 0 0 0 0.23508 1 9981 9981 8.5933 1.304 1 10390 7530 6683 6687 10512 10512 -0.11388653249514391 EEEFVCEPP 9 Unmodified _EEEFVCEPP_ 0 0 0 ENSG00000126243|ENST00000246529|LRFN3;LRFN2|p.W640Lfs*15|1|0.41|ENSG00000156564|chr6:40392395-40392396|-/G|frameshift_variant;ENSG00000156564|ENST00000338305|LRFN2 ENSG00000126243|ENST00000246529|LRFN3 ENSG00000126243|ENST00000246529|LRFN3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 3 360.151435 1077.43248 NaN NaN NaN NaN NaN NaN NaN 26.911 1 25.276 24.776 25.776 -1.6347 0 0 0 0.23508 1 4479 4479 2.9952 0.26005 1 10391 3422 6684 6688 10513 10513 -0.10314185415927568 EEEGDEEND 9 Unmodified _EEEGDEEND_ 0 0 0 ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1 ENSG00000187109|ENST00000618691|NAP1L1 ENSG00000187109|ENST00000618691|NAP1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2861938476562 2 533.17818 1064.34181 0.28592 0.00015245 -4.1022 -0.0021872 -3.8163 -0.0020348 533.1752861346974 75.606 0.85908 75.606 75.138 75.997 0 48 24 3 0 0 0 0.8319 1 14675 14675 12.532 0 1 2834000 10392 7096 6685 6689 10514 10514 -0.18778982930507482 EEEGGDQAK 9 Unmodified _EEEGGDQAK_ 0 0 0 nc|ENSG00000140829|Q92620-2|DHX38 nc|ENSG00000140829|Q92620-2|DHX38 nc|ENSG00000140829|Q92620-2|DHX38 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7755432128906 2 481.706711 961.398869 NaN NaN NaN NaN NaN NaN NaN 161.95 1 157.16 156.66 157.66 -4.7898 0 0 0 0.19684 1 32209 32209 0.40827 0 1 10393 12358 6686 6690 10515 10515 -0.08337470863477847 EEEGVKMSA 9 Unmodified _EEEGVKMSA_ 0 0 0 ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant;ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.R303Kfs*10|1|0.3|ENSG00000177853|chr10:96157223-96157224|-/A|frameshift_variant;ZNF518A|p.N426Mfs*2|1|0.29|ENSG00000177853|chr10:96157595-96157595|A/-|frameshift_variant ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2633056640625 2 490.223682 978.432811 NaN NaN NaN NaN NaN NaN NaN 29.177 1 29.177 28.677 29.677 0 0 0 0 0.18489 1 5204 5204 30.703 17.089 1 10394 6543 6687 6691 10516 10516 -0.057267656960675595 EEEGVKMSA 9 Unmodified _EEEGVKMSA_ 0 0 0 ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant;ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.R303Kfs*10|1|0.3|ENSG00000177853|chr10:96157223-96157224|-/A|frameshift_variant;ZNF518A|p.N426Mfs*2|1|0.29|ENSG00000177853|chr10:96157595-96157595|A/-|frameshift_variant ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2633056640625 2 490.223682 978.432811 NaN NaN NaN NaN NaN NaN NaN 29.185 1 29.185 28.685 29.685 0 0 0 0 0.10094 1 5205 5205 38.176 5.8701 1 10395 6543 6687 6691 10517 10517 -0.057267656960675595 EEEGVKMSA 9 Unmodified _EEEGVKMSA_ 0 0 0 ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant;ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.R303Kfs*10|1|0.3|ENSG00000177853|chr10:96157223-96157224|-/A|frameshift_variant;ZNF518A|p.N426Mfs*2|1|0.29|ENSG00000177853|chr10:96157595-96157595|A/-|frameshift_variant ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27435302734375 2 490.223682 978.432811 NaN NaN NaN NaN NaN NaN NaN 31.151 1 29.034 28.534 29.534 -2.1167 0 0 0 0.10094 1 5646 5646 38.176 11.292 1 10396 6543 6687 6691 10518 10518 -0.057267656960675595 EEEGVKMSA 9 Unmodified _EEEGVKMSA_ 0 0 0 ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant;ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.R303Kfs*10|1|0.3|ENSG00000177853|chr10:96157223-96157224|-/A|frameshift_variant;ZNF518A|p.N426Mfs*2|1|0.29|ENSG00000177853|chr10:96157595-96157595|A/-|frameshift_variant ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2593688964844 2 490.223682 978.432811 0.40019 0.00019618 0.61818 0.00030305 1.0184 0.00049923 490.223885609093 30.997 0.35158 28.971 28.845 29.197 -2.0264 14 9 2 0 0 0 0.25976 4 5360 5325;5331;5360;5383 31.268 11.267 1 869760 10397 6543 6687 6691 10519;10520;10521;10522 10521 -0.057267656960675595 EEEGVKMSA 9 Unmodified _EEEGVKMSA_ 0 0 0 ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant;ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.R303Kfs*10|1|0.3|ENSG00000177853|chr10:96157223-96157224|-/A|frameshift_variant;ZNF518A|p.N426Mfs*2|1|0.29|ENSG00000177853|chr10:96157595-96157595|A/-|frameshift_variant ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 490.223682 978.432811 0.26612 0.00013046 1.2408 0.00060825 1.5069 0.00073871 490.22426751404925 31.208 0.38302 29.06 28.848 29.231 -2.1483 0.044674 0.0003905 NaN 31.268 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 494130 10398 6543 6687 6691 -0.057267656960675595 EEEINTLG 8 Unmodified _EEEINTLG_ 0 0 0 REV__IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant REV__IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7674255371094 2 452.716547 903.418542 -0.083719 -3.7901E-05 0.96375 0.0004363 0.88003 0.0003984 452.7169831938453 33.311 0.73125 30.993 30.627 31.358 -2.3175 49 20 3 0 0 0 0.72861 1 6037 6037 10.183 0 1 5387300 + 10399 16589 6688 6692 10523 10523 -0.03703094852687627 EEEIQMNDS 9 Unmodified _EEEIQMNDS_ 0 0 0 ENSG00000155115|ENST00000329970|GTF3C6 ENSG00000155115|ENST00000329970|GTF3C6 ENSG00000155115|ENST00000329970|GTF3C6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.772216796875 2 547.718961 1093.42337 0.3168 0.00017352 -2.6997 -0.0014787 -2.3829 -0.0013051 547.7176634678684 152.81 0.14264 148.04 147.94 148.08 -4.7684 5 3 2 0 0 0 0.87511 1 30365 30365 7.2892 1.5288 1 1234800 10400 5036 6689 6693 10524 10524 -0.11960578772254848 EEEISFRA 8 Unmodified _EEEISFRA_ 0 0 0 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26617431640625 2 490.737814 979.461075 0.34782 0.00017069 -1.1467 -0.00056271 -0.79885 -0.00039203 490.7379201594295 75.249 0.51703 75.249 75.029 75.546 0 25 14 2 0 0 0 0.83238 1 14596 14596 23.79 15.634 1 1622300 10401 5384 6690 6694 10525 10525 -0.029476997244614722 EEEIYKDNE 9 Unmodified _EEEIYKDNE_ 0 0 0 tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1 tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1 tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.6971435546875 3 390.171664 1167.49316 -0.31757 -0.00012391 0.081387 3.1755E-05 -0.23619 -9.2154E-05 390.17165121721763 65.542 1.3351 62.258 61.42 62.755 -3.2832 59 38 2 0 0 0 0.47366 1 12249 12249 0.40827 0 1 1503000 10402 26332 6691 6695 10526 10526 -0.08388376831999267 EEEKIQRY 8 Unmodified _EEEKIQRY_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.Q563Hfs*5|1|0.04|ENSG00000167632|chr8:140300548-140300549|-/ATGCATGTGCA|frameshift_variant nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7779541015625 2 547.77747 1093.54039 0.25682 0.00014068 0.42335 0.0002319 0.68017 0.00037258 547.7777014979105 65.316 0.45833 61.858 61.716 62.174 -3.4581 18 12 2 0 0 0 0.40661 1 12257 12257 32.117 7.4431 1 696020 10403 5824 6692 6696 10527 10527 -0.0026405277033063612 EEEKIQRY 8 Unmodified _EEEKIQRY_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.Q563Hfs*5|1|0.04|ENSG00000167632|chr8:140300548-140300549|-/ATGCATGTGCA|frameshift_variant nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.76806640625 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 152.27 1 147.04 146.54 147.54 -5.2365 0 0 0 0.2074 1 29522 29522 19.439 2.4967 1 10404 5824 6692 6696 10528 10528 -0.0026405277033063612 EEEKKAFAE 9 Unmodified _EEEKKAFAE_ 0 0 0 NEXN|p.I467*|2|0.39|ENSG00000162614|chr1:77935964-77935964|A/-|frameshift_variant;NEXN|p.N590Tfs*5|1|0.2|ENSG00000162614|chr1:77942566-77942566|A/-|frameshift_variant;nc|ENSG00000162614|Q0ZGT2-4|NEXN;nc|ENSG00000162614|Q0ZGT2-3|NEXN;nc|ENSG00000162614|Q0ZGT2-2|NEXN;ENSG00000162614|ENST00000334785|NEXN NEXN|p.I467*|2|0.39|ENSG00000162614|chr1:77935964-77935964|A/-|frameshift_variant NEXN|p.I467*|2|0.39|ENSG00000162614|chr1:77935964-77935964|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2826538085938 2 540.764029 1079.5135 0.19331 0.00010453 2.2963 0.0012418 2.4896 0.0013463 541.2648816875716 130.64 0.10223 126 125.93 126.04 -4.6359 4 2 2 0 0 0 0.46541 2 25739 25739;25745 21.747 2.3606 1 755010 10405 5347 6693 6697 10529;10530 10529 -0.023071613815318415 EEEKLLHLA 9 Unmodified _EEEKLLHLA_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.K219Sfs*24|1|0.25|ENSG00000096401|chr6:44403919-44403919|A/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2620239257812 2 541.298039 1080.58152 0.67599 0.00036591 -0.2281 -0.00012347 0.44789 0.00024244 541.2979439821002 80.608 0.83765 80.608 80.11 80.948 0 34 23 2 0 0 0 0.00016281 1 15679 15679 122.18 59.607 1 3352700 10406 455;456 6694 6698 10531 10531 0.04445708269145143 EEEKLLHLA 9 Unmodified _EEEKLLHLA_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.K219Sfs*24|1|0.25|ENSG00000096401|chr6:44403919-44403919|A/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2619018554688 2 541.298039 1080.58152 0.18914 0.00010238 -0.33613 -0.00018195 -0.14699 -7.9565E-05 541.297740706468 83.716 0.69545 80.108 79.726 80.422 -3.6079 28 19 2 0 0 0 0.045272 1 16386 16386 74.929 28.908 1 2926700 10407 455;456 6694 6698 10532 10532 0.04445708269145143 EEEKLLHLA 9 Unmodified _EEEKLLHLA_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.K219Sfs*24|1|0.25|ENSG00000096401|chr6:44403919-44403919|A/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.81878662109375 3 361.201118 1080.58152 0.15118 5.4608E-05 0.055155 1.9922E-05 0.20634 7.453E-05 361.2011235513658 84.105 0.67432 80.195 79.715 80.389 -3.9093 29 18 2 0 0 0 0.47592 1 15927 15927 17.113 16.705 1 2966200 10408 455;456 6694 6698 10533 10533 0.04445708269145143 EEEKLLHLA 9 Unmodified _EEEKLLHLA_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.K219Sfs*24|1|0.25|ENSG00000096401|chr6:44403919-44403919|A/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2623901367188 2 541.298039 1080.58152 0.21362 0.00011563 0.028454 1.5402E-05 0.24207 0.00013103 541.298044865321 84.049 0.56373 80.139 79.825 80.389 -3.9093 24 15 2 0 0 0 0.13686 1 15983 15983 61.357 32.871 1 2542400 10409 455;456 6694 6698 10534 10534 0.04445708269145143 EEEKLLHLA 9 Unmodified _EEEKLLHLA_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.K219Sfs*24|1|0.25|ENSG00000096401|chr6:44403919-44403919|A/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2621459960938 2 541.298039 1080.58152 0.032474 1.7578E-05 0.31676 0.00017146 0.34924 0.00018904 541.2982088042573 83.789 0.60307 80.09 79.864 80.467 -3.6985 29 16 2 0 0 0 0.07121 1 16040 16040 78.149 40.175 1 2393700 10410 455;456 6694 6698 10535 10535 0.04445708269145143 EEEKLLHLA 9 Unmodified _EEEKLLHLA_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.K219Sfs*24|1|0.25|ENSG00000096401|chr6:44403919-44403919|A/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 361.201118 1080.58152 -0.2797 -0.00010103 0.29082 0.00010505 0.011129 4.0197E-06 361.20118271103706 83.65 0.7639 80.042 79.691 80.455 -3.6079 -0.076788 0.0001474 NaN 17.113 41 21 3 NaN NaN NaN NaN 0 NaN NaN 0 2499900 10411 455;456 6694 6698 0.04445708269145143 EEEKLQAAF 9 Unmodified _EEEKLQAAF_ 0 0 0 COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant;ENSG00000145781|ENST00000274458|COMMD10 COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2672729492188 2 532.766571 1063.51859 0.27516 0.0001466 -0.43969 -0.00023425 -0.16453 -8.7659E-05 532.7662856936728 75.628 0.61938 75.628 75.378 75.997 0 46 17 4 0 0 0 0.10573 2 14660 14660;14712 53.833 22.564 1 27683000 10412 635 6695 6699 10536;10537 10536 -0.010628575189230105 EEEKLQAAF 9 Unmodified _EEEKLQAAF_ 0 0 0 COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant;ENSG00000145781|ENST00000274458|COMMD10 COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.267822265625 2 532.766571 1063.51859 0.096091 5.1194E-05 -0.46911 -0.00024993 -0.37302 -0.00019873 532.766222250379 79.043 0.84418 75.533 75.029 75.873 -3.5102 65 23 4 0 0 0 2.7182E-05 2 15445 15386;15445 133.05 75.33 1 31836000 10413 635 6695 6699 10538;10539 10539 -0.010628575189230105 EEEKLQAAF 9 Unmodified _EEEKLQAAF_ 0 0 0 COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant;ENSG00000145781|ENST00000274458|COMMD10 COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2681274414062 2 532.766571 1063.51859 0.33389 0.00017788 -0.23036 -0.00012273 0.10352 5.5154E-05 532.7663364099371 79.405 0.80877 75.6 75.055 75.864 -3.8048 64 22 4 0 0 0 2.219E-07 3 15053 15053;15103;15109 145.13 78.673 1 27322000 10414 635 6695 6699 10540;10541;10542 10540 -0.010628575189230105 EEEKLQAAF 9 Unmodified _EEEKLQAAF_ 0 0 0 COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant;ENSG00000145781|ENST00000274458|COMMD10 COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2679443359375 2 532.766571 1063.51859 -0.019154 -1.0205E-05 -0.10141 -5.403E-05 -0.12057 -6.4235E-05 532.7664605327363 79.28 0.87714 75.604 75.027 75.904 -3.676 44 24 2 0 0 0 0.0022896 2 15114 15066;15114 118.07 60.346 1 33083000 10415 635 6695 6699 10543;10544 10544 -0.010628575189230105 EEEKMHFH 8 Unmodified _EEEKMHFH_ 0 0 0 nc|ENSG00000145242|P54756-3|EPHA5;nc|ENSG00000145242|P54756-2|EPHA5;ENSG00000145242|ENST00000613740|EPHA5;nc|ENSG00000145242|P54756|EPHA5 nc|ENSG00000145242|P54756-3|EPHA5 nc|ENSG00000145242|P54756-3|EPHA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7842407226562 2 543.737291 1085.46003 0.12522 6.8084E-05 0.47385 0.00025765 0.59907 0.00032574 544.2393344524894 113.91 0.31502 109.35 109.21 109.52 -4.555 12 8 2 0 0 0 0.96284 1 21874 21874 19.439 3.6708 1 1335800 10416 4598 6696 6700 10545 10545 -0.07928237365035784 EEEKNIAF 8 Unmodified _EEEKNIAF_ 0 0 0 REV__WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant REV__WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2527770996094 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 33.68 1 31.362 30.862 31.862 -2.3175 0 0 0 0.20568 1 6164 6164 20.871 5.103 1 + 10417 17765 6697 6701 10546 10546 -0.024268155817139814 EEEKNYALP 9 Unmodified _EEEKNYALP_ 0 0 0 ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR ENST00000577161.5_1_17:78519375-78883449:+|nuORF ENST00000577161.5_1_17:78519375-78883449:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7672119140625 2 546.764029 1091.5135 0.019142 1.0466E-05 0.38048 0.00020803 0.39962 0.0002185 546.764139145607 61.689 1.6469 61.689 61.047 62.694 0 130 47 4 0 0 0 0.067773 4 11831 11791;11831;11861;11879 65.235 36.153 1 31724000 10418 4384 6698 6702 10547;10548;10549;10550 10548 -0.02859161381525155 EEEKNYALP 9 Unmodified _EEEKNYALP_ 0 0 0 ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR ENST00000577161.5_1_17:78519375-78883449:+|nuORF ENST00000577161.5_1_17:78519375-78883449:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7671508789062 2 546.764029 1091.5135 0.21662 0.00011844 0.06322 3.4567E-05 0.27984 0.000153 546.7639861552817 64.918 1.4681 61.871 61.276 62.744 -3.047 133 42 4 0 0 0 0.053942 4 12591 12489;12541;12591;12642 69.105 40.023 1 36253000 10419 4384 6698 6702 10551;10552;10553;10554 10553 -0.02859161381525155 EEEKNYALP 9 Unmodified _EEEKNYALP_ 0 0 0 ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR ENST00000577161.5_1_17:78519375-78883449:+|nuORF ENST00000577161.5_1_17:78519375-78883449:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7669067382812 2 546.764029 1091.5135 0.25224 0.00013791 -0.039739 -2.1728E-05 0.2125 0.00011619 546.7639400165134 65.299 1.5404 61.841 61.225 62.765 -3.4581 133 43 4 0 0 0 0.067773 5 12212 12168;12212;12260;12307;12315 65.235 29.108 1 39296000 10420 4384 6698 6702 10555;10556;10557;10558;10559 10556 -0.02859161381525155 EEEKNYALP 9 Unmodified _EEEKNYALP_ 0 0 0 ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR ENST00000577161.5_1_17:78519375-78883449:+|nuORF ENST00000577161.5_1_17:78519375-78883449:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.766845703125 2 546.764029 1091.5135 0.38004 0.00020779 -0.11198 -6.1226E-05 0.26806 0.00014657 546.7638840076986 65.071 1.6517 61.788 61.139 62.791 -3.2832 139 47 4 0 0 0 0.033473 3 12225 12184;12225;12278 78.728 42.601 1 31852000 10421 4384 6698 6702 10560;10561;10562 10561 -0.02859161381525155 EEEKRMLEA 9 Unmodified _EEEKRMLEA_ 0 0 0 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1;nc|ENSG00000002822|Q9Y6D9-4|MAD1L1;ENSG00000002822|ENST00000265854|MAD1L1 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 378.84368896484375 3 378.853501 1133.53867 -0.16934 -6.4154E-05 -0.10938 -4.1438E-05 -0.27871 -0.00010559 378.85348888646536 31.037 1.1231 28.963 28.71 29.833 -2.0743 81 31 5 0 0 0 0.58921 1 5399 5399 8.1555 1.5252 1 6580400 10422 964 6699 6703 10563 10563 -0.022754298506015402 EEEKRMLEA 9 Unmodified _EEEKRMLEA_ 0 0 0 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1;nc|ENSG00000002822|Q9Y6D9-4|MAD1L1;ENSG00000002822|ENST00000265854|MAD1L1 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 378.853501 1133.53867 -0.10307 -3.9047E-05 -0.19773 -7.491E-05 -0.30079 -0.00011396 378.8534400618811 29.105 0.69514 29.105 28.774 29.469 0 0.11361 0.00014515 NaN 8.1555 73 19 5 NaN NaN NaN NaN 0 NaN NaN 0 9558300 10423 964 6699 6703 -0.022754298506015402 EEEKRMLEA 9 Unmodified _EEEKRMLEA_ 0 0 0 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1;nc|ENSG00000002822|Q9Y6D9-4|MAD1L1;ENSG00000002822|ENST00000265854|MAD1L1 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 378.853501 1133.53867 0.14151 5.3613E-05 -0.33146 -0.00012558 -0.18995 -7.1963E-05 378.85335837408803 31.064 0.52512 28.947 28.683 29.208 -2.1167 -0.044209 -6.8493E-06 NaN 8.1555 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 7698300 10424 964 6699 6703 -0.022754298506015402 EEEKRMLEA 9 Unmodified _EEEKRMLEA_ 0 0 0 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1;nc|ENSG00000002822|Q9Y6D9-4|MAD1L1;ENSG00000002822|ENST00000265854|MAD1L1 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 378.853501 1133.53867 0.30903 0.00011708 -0.65007 -0.00024628 -0.34104 -0.0001292 378.8532966712339 30.977 0.91781 28.951 28.599 29.517 -2.0264 -0.040801 -0.00036897 NaN 8.1555 73 25 5 NaN NaN NaN NaN 0 NaN NaN 0 7729500 10425 964 6699 6703 -0.022754298506015402 EEEKTTLRA 9 Unmodified _EEEKTTLRA_ 0 0 0 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant;IPO11|p.S807Ffs*5|1|0.37|ENSG00000086200|chr5:62551287-62551288|-/T|frameshift_variant;IPO11|p.S807Lfs*22|2|0.29|ENSG00000086200|chr5:62551288-62551288|T/-|frameshift_variant;ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11;IPO11|p.F304Lfs*18|1|0.23|ENSG00000086200|chr5:62483180-62483180|T/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2005615234375 3 359.524261 1075.55095 -0.29839 -0.00010728 0.87622 0.00031502 0.57783 0.00020774 359.52449178094537 18.373 0.38692 18.373 18.195 18.582 0 31 10 4 0 0 0 0.6228 1 2937 2937 11.518 1.3673 1 11180000 10426 1691 6700 6704 10564 10564 0.01619929884100202 EEEKTTLRA 9 Unmodified _EEEKTTLRA_ 0 0 0 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant;IPO11|p.S807Ffs*5|1|0.37|ENSG00000086200|chr5:62551287-62551288|-/T|frameshift_variant;IPO11|p.S807Lfs*22|2|0.29|ENSG00000086200|chr5:62551288-62551288|T/-|frameshift_variant;ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11;IPO11|p.F304Lfs*18|1|0.23|ENSG00000086200|chr5:62483180-62483180|T/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.524261 1075.55095 -0.095423 -3.4307E-05 0.60915 0.000219 0.51373 0.0001847 359.52443559018974 19.723 0.41513 18.326 18.066 18.481 -1.3966 -0.0055421 -0.00015238 NaN 11.518 27 11 4 NaN NaN NaN NaN 0 NaN NaN 0 8518900 10427 1691 6700 6704 0.01619929884100202 EEEKTTLRA 9 Unmodified _EEEKTTLRA_ 0 0 0 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant;IPO11|p.S807Ffs*5|1|0.37|ENSG00000086200|chr5:62551287-62551288|-/T|frameshift_variant;IPO11|p.S807Lfs*22|2|0.29|ENSG00000086200|chr5:62551288-62551288|T/-|frameshift_variant;ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11;IPO11|p.F304Lfs*18|1|0.23|ENSG00000086200|chr5:62483180-62483180|T/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.524261 1075.55095 -0.29762 -0.000107 0.80722 0.00029021 0.5096 0.00018321 359.52450098391034 19.62 0.34122 18.295 18.11 18.451 -1.3251 -0.036348 6.1253E-05 NaN 11.518 27 9 4 NaN NaN NaN NaN 0 NaN NaN 0 7587200 10428 1691 6700 6704 0.01619929884100202 EEELFKMRA 9 Unmodified _EEELFKMRA_ 0 0 0 ENST00000435265.5_1_22:20106640-20110140:+|nuORF;ENST00000488484.1_1_22:20105172-20110015:+|nuORF;nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1 ENST00000435265.5_1_22:20106640-20110140:+|nuORF ENST00000435265.5_1_22:20106640-20110140:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3185424804688 2 576.789524 1151.56449 0.22874 0.00013194 -3.0349 -0.0017505 -2.8062 -0.0016186 577.2889301199758 86.934 0.44889 86.934 86.703 87.152 0 22 12 2 0 0 0 0.52242 1 16950 16950 29.082 10.935 1 1740100 10429 1909 6701 6705 10565 10565 -0.005225356082974031 EEELFKMRA 9 Unmodified _EEELFKMRA_ 0 0 0 ENST00000435265.5_1_22:20106640-20110140:+|nuORF;ENST00000488484.1_1_22:20105172-20110015:+|nuORF;nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1 ENST00000435265.5_1_22:20106640-20110140:+|nuORF ENST00000435265.5_1_22:20106640-20110140:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3391723632812 2 576.789524 1151.56449 0.4591 0.00026481 -2.5976 -0.0014983 -2.1385 -0.0012335 577.2884239293887 90.736 0.62698 86.691 86.374 87.001 -4.0443 30 17 2 0 0 0 0.31673 1 17289 17289 39.95 18.203 1 2755100 10430 1909 6701 6705 10566 10566 -0.005225356082974031 EEELGLLGP 9 Unmodified _EEELGLLGP_ 0 0 0 ENST00000590759.1_1_19:44674233-44676429:+|nuORF;nc|ENSG00000167380|Q9NYT6-2|ZNF226;ENSG00000167380|ENST00000337433|ZNF226 ENST00000590759.1_1_19:44674233-44676429:+|nuORF ENST00000590759.1_1_19:44674233-44676429:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7314147949219 2 478.75039 955.486227 NaN NaN NaN NaN NaN NaN NaN 138.74 1 133.79 133.29 134.29 -4.952 0 0 0 0.15147 1 26681 26681 30.225 0 1 10431 5806 6702 6706 10567 10567 0.006703550781139711 EEELGLLN 8 Unmodified _EEELGLLN_ 0 0 0 ZNF235|p.D26N|1|0.28|ENSG00000159917|chr19:44299672-44299672|C/T|missense_variant ZNF235|p.D26N|1|0.28|ENSG00000159917|chr19:44299672-44299672|C/T|missense_variant ZNF235|p.D26N|1|0.28|ENSG00000159917|chr19:44299672-44299672|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386779785156 2 458.73474 915.454927 0.656 0.00030093 -0.25104 -0.00011516 0.40496 0.00018577 458.73450135559193 102.33 0.76589 102.33 101.99 102.76 0 39 21 3 0 0 0 0.34033 1 20083 20083 38.151 2.107 1 2388300 10432 26608 6703 6707 10568 10568 -0.0061821795599144025 EEELGYQPT 9 Unmodified _EEELGYQPT_ 0 0 0 REV__ENST00000515258.2_9:67786282-67786537:+|nuORF REV__ENST00000515258.2_9:67786282-67786537:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.272216796875 2 533.240386 1064.46622 NaN NaN NaN NaN NaN NaN NaN 31.608 1 31.608 31.108 32.108 0 0 0 0 0.23508 1 5715 5715 10.074 2.1638 1 + 10433 22586 6704 6708 10569 10569 -0.06343440652517529 EEELLSYIR 9 Unmodified _EEELLSYIR_ 0 0 0 nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR;TICRR|p.P1378Lfs*50|1|0.23|ENSG00000140534|chr15:89624439-89624439|C/-|frameshift_variant nc|ENSG00000140534|Q7Z2Z1-2|TICRR nc|ENSG00000140534|Q7Z2Z1-2|TICRR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33154296875 2 576.300778 1150.587 NaN NaN NaN NaN NaN NaN NaN 76.775 1 73.008 72.508 73.508 -3.7664 0 0 0 0.22251 1 14543 14543 16.942 2.104 1 10434 4309 6705 6709 10570 10570 0.01773387060939058 EEELRDYQ 8 Unmodified _EEELRDYQ_ 0 0 0 ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2600708007812 2 541.24346 1080.47237 0.30974 0.00016765 0.66522 0.00036005 0.97496 0.00052769 541.2437325083437 75.795 2.0277 72.161 71.467 73.495 -3.6337 124 57 3 0 0 0 0.70344 1 14598 14598 18.135 5.6034 1 10165000 10435 3545 6706 6710 10571 10571 -0.0646492242099157 EEELSYFNF 9 Unmodified _EEELSYFNF_ 0 0 0 REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2727661132812 2 589.256037 1176.49752 0.030575 1.8017E-05 1.6383 0.00096539 1.6689 0.00098341 589.2578598024223 85.241 0.82196 81.53 81.015 81.837 -3.7117 48 23 3 0 0 0 0.54354 1 16216 16216 16.942 4.4107 1 3102100 + 10436 21796 6707 6711 10572 10572 -0.08366867618406104 EEELVLAEY 9 Unmodified _EEELVLAEY_ 0 0 0 nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000013573|Q96FC9-5|DDX11;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;DDX11|p.G621Vfs*32|1|0.1|ENSG00000013573|chr12:31097979-31097979|G/-|frameshift_variant;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;nc|ENSG00000214826|Q92771|DDX12P nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P nc|ENSG00000214826|Q92771|DDX12P MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7722778320312 2 547.766237 1093.51792 NaN NaN NaN NaN NaN NaN NaN 154.24 1 149.02 148.52 149.52 -5.2209 0 0 0 0.23508 1 29902 29902 11.64 3.7301 1 10437 12209;12595 6708 6712 10573 10573 -0.02509696958600216 EEEMQSTI 8 Unmodified _EEEMQSTI_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 483.2386169433594 2 483.707865 965.401177 0.0044227 2.1393E-06 0.15576 7.5342E-05 0.16018 7.7481E-05 483.70788072419396 68.692 1.0123 65.512 65.07 66.082 -3.1796 51 28 2 0 0 0 1.0268 1 13284 13284 0.79363 0 1 10685000 10438 6284 6709 6713 10574 10574 -0.08290758450004887 EEEMQSTI 8 Unmodified _EEEMQSTI_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 483.707865 965.401177 0.42649 0.0002063 -0.23786 -0.00011505 0.18863 9.1241E-05 483.70770764803666 69.031 0.99922 65.495 65.22 66.22 -3.5362 -0.05185 -0.00020369 NaN 0.79363 43 27 2 NaN NaN NaN NaN 0 NaN NaN 0 4338600 10439 6284 6709 6713 -0.08290758450004887 EEEMQSTI 8 Unmodified _EEEMQSTI_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 483.707865 965.401177 0.19509 9.4367E-05 -0.0039445 -1.908E-06 0.19115 9.2459E-05 483.70781754551837 69.023 1.2157 65.632 65.115 66.33 -3.3903 0.085926 2.2604E-05 NaN 0.79363 53 34 2 NaN NaN NaN NaN 0 NaN NaN 0 4768500 10440 6284 6709 6713 -0.08290758450004887 EEENEFIFFG 10 Unmodified _EEENEFIFFG_ 0 0 0 REV__tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 REV__tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7736206054688 2 630.774593 1259.53463 NaN NaN NaN NaN NaN NaN NaN 103 1 103 102.5 103.5 0 0 0 0 0.22588 1 20235 20235 4.3292 0 1 + 10441 25193 6710 6714 10575 10575 -0.08475196072686231 EEENEMWMY 9 Unmodified _EEENEMWMY_ 0 0 0 REV__ENST00000507415.1_1_5:138699473-138699677:+|nuORF REV__ENST00000507415.1_1_5:138699473-138699677:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7637939453125 2 630.731014 1259.44748 1.0098 0.00063689 -3.9747 -0.002507 -2.965 -0.0018701 631.2310479563677 127.98 0.13705 123.36 123.27 123.41 -4.6172 5 3 2 0 0 0 0.5464 1 25231 25231 0.073264 0 1 827240 + 10442 15631 6711 6715 10576 10576 -0.17187061610229648 EEENGSNNS 9 Unmodified _EEENGSNNS_ 0 0 0 ENST00000464326.1_1_9:19108613-19116611:-|nuORF ENST00000464326.1_1_9:19108613-19116611:-|nuORF ENST00000464326.1_1_9:19108613-19116611:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.254638671875 2 490.1836 978.352647 0.42856 0.00021007 -1.3958 -0.0006842 -0.96724 -0.00047413 490.1825063285694 103.84 0.96009 99.785 99.382 100.34 -4.0543 66 26 3 0 0 0 0.81703 1 19893 19893 6.2058 0.9089 1 8051000 10443 10109 6712 6716 10577 10577 -0.13739535765557775 EEENGSNNS 9 Unmodified _EEENGSNNS_ 0 0 0 ENST00000464326.1_1_9:19108613-19116611:-|nuORF ENST00000464326.1_1_9:19108613-19116611:-|nuORF ENST00000464326.1_1_9:19108613-19116611:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.1836 978.352647 0.27916 0.00013684 -1.6634 -0.00081537 -1.3842 -0.00067853 490.1825326898408 104.06 0.96732 99.71 99.35 100.32 -4.346 -0.011891 -0.0003196 NaN 6.2058 64 27 3 NaN NaN NaN NaN 0 NaN NaN 0 9200200 10444 10109 6712 6716 -0.13739535765557775 EEENIYSVP 9 Unmodified _EEENIYSVP_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2753295898438 2 540.248212 1078.48187 0.13904 7.5116E-05 0.34406 0.00018588 0.4831 0.000261 540.2482370710675 97.873 1.1718 93.954 93.398 94.57 -3.9194 67 33 3 0 0 0 0.5059 1 18733 18733 19.257 4.4187 1 4078100 10445 5226 6713 6717 10578 10578 -0.05423154135473851 EEENIYSVP 9 Unmodified _EEENIYSVP_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.248212 1078.48187 0.22892 0.00012367 -0.12564 -6.7878E-05 0.10328 5.5795E-05 540.2480873839723 98.221 1.2163 94.088 93.358 94.574 -4.1326 0.097364 -0.00029812 NaN 19.257 68 34 3 NaN NaN NaN NaN 0 NaN NaN 0 4555300 10446 5226 6713 6717 -0.05423154135473851 EEENTIFKA 9 Unmodified _EEENTIFKA_ 0 0 0 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2657470703125 2 540.764029 1079.5135 0.048753 2.6364E-05 0.010006 5.4109E-06 0.058759 3.1775E-05 540.7641463849876 69.773 0.57716 69.773 69.455 70.032 0 28 15 2 0 0 0 0.072372 3 13511 13467;13511;13528 63.961 24.834 1 3298600 10447 2993 6714 6718 10579;10580;10581 10580 -0.02307161381509104 EEENTIFKA 9 Unmodified _EEENTIFKA_ 0 0 0 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.265625 2 540.764029 1079.5135 0.088989 4.8122E-05 -0.40857 -0.00022094 -0.31958 -0.00017282 540.7638219923782 72.95 0.57239 69.64 69.384 69.956 -3.3107 24 15 2 0 0 0 0.045725 3 14217 14196;14217;14269 72.968 20.188 1 2962600 10448 2993 6714 6718 10582;10583;10584 10583 -0.02307161381509104 EEENTIFKA 9 Unmodified _EEENTIFKA_ 0 0 0 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2763061523438 2 540.764029 1079.5135 0.32285 0.00017458 -0.3556 -0.0001923 -0.032755 -1.7713E-05 540.7636695585192 73.289 0.52857 69.613 69.296 69.824 -3.6764 30 14 3 0 0 0 0.27332 1 13884 13884 36.506 14.969 1 2121500 10449 2993 6714 6718 10585 10585 -0.02307161381509104 EEENTIFKA 9 Unmodified _EEENTIFKA_ 0 0 0 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2650756835938 2 540.764029 1079.5135 0.45177 0.0002443 -0.66872 -0.00036162 -0.21695 -0.00011732 540.7637438459036 73.147 0.65832 69.609 69.375 70.033 -3.5385 31 18 2 0 0 0 0.019708 3 13888 13856;13888;13944 92.653 32.579 1 2958300 10450 2993 6714 6718 10586;10587;10588 10587 -0.02307161381509104 EEEPEDEEEEE 11 Unmodified _EEEPEDEEEEE_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant;ENST00000595368.5_1_19:39936232-39948556:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24822998046875 3 464.831813 1391.47361 NaN NaN NaN NaN NaN NaN NaN 105.91 1 105.91 105.41 106.41 0 0 0 0 0.23698 1 20817 20817 1.3296 0.31607 1 10451 7250 6715 6719 10589 10589 -0.20646842424048373 EEEPESELEGP 11 Unmodified _EEEPESELEGP_ 0 0 0 REV__ENSG00000173013|ENST00000310085|CCDC96 REV__ENSG00000173013|ENST00000310085|CCDC96 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7603759765625 2 622.76188 1243.50921 NaN NaN NaN NaN NaN NaN NaN 51.899 1 48.854 48.354 49.354 -3.0453 0 0 0 0.22862 1 9538 9538 9.3831 0 1 + 10452 18322 6716 6720 10590 10590 -0.10280715385738404 EEEPGTYGV 9 Unmodified _EEEPGTYGV_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP;DNMBP|p.T470Lfs*20|1|0.31|ENSG00000107554|chr10:99956066-99956066|T/-|frameshift_variant;DNMBP|p.S1398Lfs*25|1|0.16|ENSG00000107554|chr10:99880168-99880168|C/-|frameshift_variant ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2631530761719 2 490.714005 979.413456 0.072553 3.5603E-05 0.056112 2.7535E-05 0.12866 6.3137E-05 490.71401651191326 55.472 1.242 55.472 54.839 56.081 0 77 34 3 0 0 0 0.033228 1 10593 10593 89.427 41.081 1 7970100 10453 2427 6717 6721 10591 10591 -0.077073987153085 EEEPGTYGV 9 Unmodified _EEEPGTYGV_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP;DNMBP|p.T470Lfs*20|1|0.31|ENSG00000107554|chr10:99956066-99956066|T/-|frameshift_variant;DNMBP|p.S1398Lfs*25|1|0.16|ENSG00000107554|chr10:99880168-99880168|C/-|frameshift_variant ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27288818359375 2 490.714005 979.413456 0.03243 1.5914E-05 0.24674 0.00012108 0.27917 0.00013699 490.7139929905036 58.582 1.2205 55.672 55.098 56.318 -2.9105 98 34 4 0 0 0 0.0277 1 11258 11258 97.075 48.729 1 9888500 10454 2427 6717 6721 10592 10592 -0.077073987153085 EEEPGTYGV 9 Unmodified _EEEPGTYGV_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP;DNMBP|p.T470Lfs*20|1|0.31|ENSG00000107554|chr10:99956066-99956066|T/-|frameshift_variant;DNMBP|p.S1398Lfs*25|1|0.16|ENSG00000107554|chr10:99880168-99880168|C/-|frameshift_variant ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.266845703125 2 490.714005 979.413456 0.16301 7.9989E-05 0.35611 0.00017475 0.51912 0.00025474 490.71402959454775 58.954 1.309 55.702 55.032 56.341 -3.2517 84 36 3 0 0 0 0.033228 1 10894 10894 89.427 47.332 1 7910100 10455 2427 6717 6721 10593 10593 -0.077073987153085 EEEPGTYGV 9 Unmodified _EEEPGTYGV_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP;DNMBP|p.T470Lfs*20|1|0.31|ENSG00000107554|chr10:99956066-99956066|T/-|frameshift_variant;DNMBP|p.S1398Lfs*25|1|0.16|ENSG00000107554|chr10:99880168-99880168|C/-|frameshift_variant ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.276123046875 2 490.714005 979.413456 -0.13318 -6.5354E-05 0.30695 0.00015063 0.17377 8.5271E-05 490.71409366019833 58.903 1.1131 55.698 55.23 56.343 -3.2052 80 31 3 0 0 0 0.033228 1 10954 10954 89.427 41.081 1 6661900 10456 2427 6717 6721 10594 10594 -0.077073987153085 EEEPHVRVA 9 Unmodified _EEEPHVRVA_ 0 0 0 ENSG00000196376|ENST00000360388|SLC35F1;nc|ENSG00000196376|Q5T1Q4-2|SLC35F1 ENSG00000196376|ENST00000360388|SLC35F1 ENSG00000196376|ENST00000360388|SLC35F1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2723999023438 2 533.269813 1064.52507 0.018527 9.8801E-06 0.42859 0.00022855 0.44712 0.00023843 533.2701240843016 16.561 0.79352 16.561 16.058 16.851 0 48 22 4 0 0 0 0.57447 1 2529 2529 14.838 2.5976 1 12631000 10457 7263 6718 6722 10595 10595 -0.004609195675357114 EEEPLLCF 8 Unmodified _EEEPLLCF_ 0 0 0 REV__ENST00000316024.9_2_17:7591686-7591890:+|nuORF REV__ENST00000316024.9_2_17:7591686-7591890:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2655029296875 2 490.225694 978.436834 0.26612 0.00013046 -2.8622 -0.0014031 -2.5961 -0.0012727 490.22426751404925 31.208 0.38302 29.06 28.848 29.231 -2.1483 16 10 2 0 0 0 0.6199 1 5392 5392 20.871 0 1 494130 + 10458 20522 6719 6723 10596 10596 -0.0532467620234911 EEEPLYVNA 9 Unmodified _EEEPLYVNA_ 0 0 0 nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA nc|ENSG00000001167|P23511-2|NFYA nc|ENSG00000001167|P23511-2|NFYA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2691040039062 2 532.250754 1062.48696 0.063106 3.3588E-05 -0.17991 -9.5758E-05 -0.1168 -6.2169E-05 532.2507558400289 86.008 1.0221 86.008 85.47 86.492 0 116 28 6 0 0 0 0.081765 1 16821 16821 61.357 38.621 1 24218000 10459 954 6720 6724 10597 10597 -0.0417885027286502 EEEPLYVNA 9 Unmodified _EEEPLYVNA_ 0 0 0 nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA nc|ENSG00000001167|P23511-2|NFYA nc|ENSG00000001167|P23511-2|NFYA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.250754 1062.48696 -0.012114 -6.4476E-06 -0.044764 -2.3826E-05 -0.056878 -3.0273E-05 532.2508101029358 89.964 1.0306 86.105 85.691 86.721 -3.8595 -0.022894 0.00029477 NaN 61.357 115 28 6 NaN NaN NaN NaN 0 NaN NaN 0 33758000 10460 954 6720 6724 -0.0417885027286502 EEEPLYVNA 9 Unmodified _EEEPLYVNA_ 0 0 0 nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA nc|ENSG00000001167|P23511-2|NFYA nc|ENSG00000001167|P23511-2|NFYA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.250754 1062.48696 0.72762 0.00038728 -0.70838 -0.00037703 0.019242 1.0242E-05 532.2504375820415 90.273 1.3089 86.229 85.519 86.828 -4.0443 0.10108 -0.00041165 NaN 61.357 118 36 5 NaN NaN NaN NaN 0 NaN NaN 0 24447000 10461 954 6720 6724 -0.0417885027286502 EEEPLYVNA 9 Unmodified _EEEPLYVNA_ 0 0 0 nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA nc|ENSG00000001167|P23511-2|NFYA nc|ENSG00000001167|P23511-2|NFYA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.250754 1062.48696 0.22833 0.00012153 -0.38671 -0.00020582 -0.15837 -8.4295E-05 532.2506079621421 89.947 1.2979 86.169 85.448 86.746 -3.7779 0.0412 -6.9231E-05 NaN 61.357 143 36 6 NaN NaN NaN NaN 0 NaN NaN 0 28748000 10462 954 6720 6724 -0.0417885027286502 EEEPVTQPD 9 Unmodified _EEEPVTQPD_ 0 0 0 REV__LTN1|p.S725Ifs*7|1|0.06|ENSG00000198862|chr21:28960696-28960697|-/ATGTTAAAAA|frameshift_variant REV__LTN1|p.S725Ifs*7|1|0.06|ENSG00000198862|chr21:28960696-28960697|-/ATGTTAAAAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2611083984375 2 522.230019 1042.44548 0.2038 0.00010643 -0.82764 -0.00043222 -0.62384 -0.00032579 522.2297620102274 39.11 1.7472 36.705 36.058 37.805 -2.4049 152 49 5 0 0 0 0.38188 2 6886 6851;6886 26.884 3.5113 1 272820000 + 10463 19465 6721 6725 10598;10599 10599 -0.07404031032183411 EEEQMCPIC 9 Unmodified _EEEQMCPIC_ 0 0 0 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2698364257812 2 541.203578 1080.3926 NaN NaN NaN NaN NaN NaN NaN 125.83 1 125.83 125.33 126.33 0 0 0 0 0.23508 1 24825 24825 12.532 1.7076 1 10464 1851 6722 6726 10600 10600 -0.14437771682491984 EEEQRSGPY 9 Unmodified _EEEQRSGPY_ 0 0 0 REV__ENST00000450765.5_1_2:219524195-219524321:-|nuORF REV__ENST00000450765.5_1_2:219524195-219524321:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7821655273438 2 547.741085 1093.46762 0.081872 4.4845E-05 -0.34666 -0.00018988 -0.26479 -0.00014504 547.7407490168329 82.122 1.1688 78.249 77.61 78.779 -3.8736 92 33 4 0 0 0 0.62102 1 15546 15546 11.64 1.5664 1 11727000 + 10465 21799 6723 6727 10601 10601 -0.07537806563732374 EEEQRSGPY 9 Unmodified _EEEQRSGPY_ 0 0 0 REV__ENST00000450765.5_1_2:219524195-219524321:-|nuORF REV__ENST00000450765.5_1_2:219524195-219524321:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7767333984375 2 547.741085 1093.46762 NaN NaN NaN NaN NaN NaN NaN 36.245 1 33.897 33.397 34.397 -2.3479 0 0 0 0.22251 1 6408 6408 16.942 5.302 1 + 10466 21799 6723 6727 10602 10602 -0.07537806563732374 EEERIRYS 8 Unmodified _EEERIRYS_ 0 0 0 ENST00000527157.1_1_11:66888787-66947744:+|nuORF;KDM2A|p.L300Cfs*10|1|0.4|ENSG00000173120|chr11:67219340-67219340|T/-|frameshift_variant;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;KDM2A|p.R834Vfs*3|1|0.38|ENSG00000173120|chr11:67250525-67250525|C/-|frameshift_variant;KDM2A|p.G855Efs*24|2|0.34|ENSG00000173120|chr11:67250589-67250589|G/-|frameshift_variant;ENSG00000173120|ENST00000529006|KDM2A ENST00000527157.1_1_11:66888787-66947744:+|nuORF ENST00000527157.1_1_11:66888787-66947744:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2669067382812 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 130.76 1 125.98 125.48 126.48 -4.7725 0 0 0 0.21323 1 25170 25170 14.582 1.0738 1 10467 6268 6724 6728 10603 10603 -0.017052234301445424 EEERKLWP 8 Unmodified _EEERKLWP_ 0 0 0 REV__KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant REV__KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7824096679688 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 38.042 1 38.042 37.542 38.542 0 0 0 0 0.16002 1 7046 7046 36.044 10.645 1 + 10468 17532 6725 6729 10604 10604 0.01120554954900399 EEERTWDWCWM 11 Unmodified _EEERTWDWCWM_ 0 0 0 ENSG00000253649|ENST00000647727|PRSS51;nc|ENSG00000253649|A0A1B0GVH4|PRSS51 ENSG00000253649|ENST00000647727|PRSS51 ENSG00000253649|ENST00000647727|PRSS51 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3790283203125 2 785.808119 1569.60168 NaN NaN NaN NaN NaN NaN NaN 135.01 1 130.2 129.7 130.7 -4.8175 0 0 0 0.23698 1 25992 25992 0.35063 0.043601 1 10469 7915 6726 6730 10605 10605 -0.16033232124868846 EEERVVLPA 9 Unmodified _EEERVVLPA_ 0 0 0 ENST00000549866.5_1_12:100377893-100378199:-|nuORF ENST00000549866.5_1_12:100377893-100378199:-|nuORF ENST00000549866.5_1_12:100377893-100378199:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.268798828125 2 521.282389 1040.55022 -0.69622 -0.00036293 -0.22541 -0.0001175 -0.92163 -0.00048043 521.2821947519308 48.828 0.66515 45.829 45.542 46.207 -2.999 43 18 3 0 0 0 0.6329 1 8960 8960 10.824 3.5347 1 11691000 10470 11168 6727 6731 10606 10606 0.031571352350511006 EEERVVLPA 9 Unmodified _EEERVVLPA_ 0 0 0 ENST00000549866.5_1_12:100377893-100378199:-|nuORF ENST00000549866.5_1_12:100377893-100378199:-|nuORF ENST00000549866.5_1_12:100377893-100378199:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.282389 1040.55022 -0.031625 -1.6486E-05 -0.97587 -0.0005087 -1.0075 -0.00052519 521.281788083769 48.84 0.62094 45.833 45.518 46.139 -3.0068 0.0022544 -0.00038525 NaN 10.824 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 9616300 10471 11168 6727 6731 0.031571352350511006 EEERYFRHYRL 11 Unmodified _EEERYFRHYRL_ 0 0 0 nc|ENSG00000130770|Q9UII2-2|ATP5IF1 nc|ENSG00000130770|Q9UII2-2|ATP5IF1 nc|ENSG00000130770|Q9UII2-2|ATP5IF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2666015625 3 533.267184 1596.77972 NaN NaN NaN NaN NaN NaN NaN 171.02 1 166.24 165.74 166.74 -4.7898 0 0 0 0.22632 1 34747 34747 0.50596 0 1 10472 12321 6728 6732 10607 10607 0.005205221808409988 EEESEAKLF 9 Unmodified _EEESEAKLF_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2833251953125 2 541.256037 1080.49752 0.20311 0.00010993 -0.022707 -1.229E-05 0.1804 9.7643E-05 541.2559873372965 82.779 0.84407 79.171 78.775 79.619 -3.6079 60 23 3 0 0 0 0.071377 1 16178 16178 64.236 14.682 1 13373000 + 10473 15083 6729 6733 10608 10608 -0.039508676184368596 EEESEHDDY 9 Unmodified _EEESEHDDY_ 0 0 0 REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3379516601562 2 576.701822 1151.38909 NaN NaN NaN NaN NaN NaN NaN 70.612 1 67.363 66.863 67.863 -3.2492 0 0 0 0.23508 1 13741 13741 2.3027 0 1 + 10474 13202 6730 6734 10609 10609 -0.18054703659504412 EEESKHKDEE 10 Unmodified _EEESKHKDEE_ 0 0 0 REV__ENSG00000179144|ENST00000313543|GIMAP7 REV__ENSG00000179144|ENST00000313543|GIMAP7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7770385742188 2 630.272946 1258.53134 1.0139 0.00063903 -0.80895 -0.00050986 0.20495 0.00012917 630.2723374671044 19.12 0.41802 17.723 17.537 17.955 -1.3966 27 11 4 0 0 0 0.75676 1 3101 3101 3.5965 0 1 2660700 + 10475 18643 6731 6735 10610 10610 -0.08758490917307427 EEESMLVVNE 10 Unmodified _EEESMLVVNE_ 0 0 0 REV__tr|U7T3D6|U7T3D6_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00231PE=3SV=1 REV__tr|U7T3D6|U7T3D6_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00231PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.267822265625 2 589.765911 1177.51727 0.01882 1.11E-05 1.3401 0.00079037 1.359 0.00080147 589.7668569728402 56.111 0.56944 52.935 52.693 53.262 -3.1761 25 15 2 0 0 0 0.53552 1 10382 10382 22.736 2.3217 1 4276700 + 10476 25354 6732 6736 10611 10611 -0.06438859669970043 EEESQGGSLF 10 Unmodified _EEESQGGSLF_ 0 0 0 REV__ENSG00000109107|ENST00000226253|ALDOC REV__ENSG00000109107|ENST00000226253|ALDOC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2833251953125 2 541.735468 1081.45638 0.21561 0.0001168 0.18695 0.00010128 0.40255 0.00021808 541.735449078915 82.446 0.76466 78.838 78.43 79.194 -3.6079 47 21 3 0 0 0 0.77872 1 16178 16178 20.454 5.2051 1 2871300 + 10477 15152 6733 6737 10612 10612 -0.08108628657873851 EEETMEPD 8 Unmodified _EEETMEPD_ 0 0 0 REV__PNISR|p.R697Kfs*7|1|0.33|ENSG00000132424|chr6:99400868-99400869|-/T|frameshift_variant REV__PNISR|p.R697Kfs*7|1|0.33|ENSG00000132424|chr6:99400868-99400869|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2642822265625 2 490.18168 978.348807 0.05558 2.7244E-05 -1.1644 -0.00057078 -1.1089 -0.00054354 490.1825367600505 59.097 0.56432 56.186 55.893 56.458 -2.9105 38 15 3 0 0 0 0.96284 1 11297 11297 8.5933 0 1 937010 + 10478 16116 6734 6738 10613 10613 -0.14123341583638194 EEETQKRKR 9 Unmodified _EEETQKRKR_ 0 0 0 ENST00000597909.5_2_19:53367284-53393562:-|nuORF ENST00000597909.5_2_19:53367284-53393562:-|nuORF ENST00000597909.5_2_19:53367284-53393562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2791748046875 2 602.32565 1202.63675 NaN NaN NaN NaN NaN NaN NaN 95.741 1 91.691 91.191 92.191 -4.0496 0 0 0 0.23508 1 18770 18770 7.9102 1.7044 1 10479 11680 6735 6739 10614 10614 0.043535147895909176 EEETRQMY 8 Unmodified _EEETRQMY_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.787353515625 2 543.232039 1084.44952 0.15724 8.542E-05 -0.032607 -1.7713E-05 0.12464 6.7707E-05 543.2319650728207 47.799 0.60264 44.93 44.671 45.273 -2.869 29 16 2 0 0 0 0.66265 1 9006 9006 18.135 3.2967 1 1762100 10480 6327 6736 6740 10615 10615 -0.08932264810118795 EEETRQMY 8 Unmodified _EEETRQMY_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7765502929688 2 543.232039 1084.44952 0.02541 1.3803E-05 0.43586 0.00023678 0.46127 0.00025058 543.2319826046702 47.854 0.74194 44.912 44.545 45.287 -2.9421 40 20 3 0 0 0 0.81042 1 8777 8777 23.148 8.3102 1 1918600 10481 6327 6736 6740 10616 10616 -0.08932264810118795 EEETRQMY 8 Unmodified _EEETRQMY_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.789794921875 2 543.232039 1084.44952 -0.00042258 -2.2956E-07 0.14469 7.8601E-05 0.14427 7.8372E-05 543.2322180555375 47.925 0.69289 44.976 44.638 45.331 -2.9499 26 19 2 0 0 0 0.66265 2 8744 8744;8765 18.135 3.2967 1 1061900 10482 6327 6736 6740 10617;10618 10617 -0.08932264810118795 EEETRQMY 8 Unmodified _EEETRQMY_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.232039 1084.44952 0.15724 8.542E-05 -0.032607 -1.7713E-05 0.12464 6.7707E-05 543.2319650728207 47.799 0.60264 44.93 44.671 45.273 -2.869 -0.0090905 -0.00021736 NaN 18.135 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1762100 10483 6327 6736 6740 -0.08932264810118795 EEETRQMY 8 Unmodified _EEETRQMY_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.232039 1084.44952 -0.00042258 -2.2956E-07 0.14469 7.8601E-05 0.14427 7.8372E-05 543.2322180555375 47.925 0.69289 44.976 44.638 45.331 -2.9499 0.036414 -2.4727E-05 NaN 18.135 26 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1061900 10484 6327 6736 6740 -0.08932264810118795 EEETSIKAA 9 Unmodified _EEETSIKAA_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27069091796875 2 489.242929 976.471305 0.18871 9.2326E-05 0.033195 1.624E-05 0.22191 0.00010857 489.24286716658173 21.863 0.55407 21.863 21.635 22.189 0 41 15 4 0 0 0 0.5059 1 3710 3710 19.257 3.4098 1 10522000 10485 7795 6737 6741 10619 10619 -0.01787136789903343 EEETSIKAA 9 Unmodified _EEETSIKAA_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25927734375 2 489.242929 976.471305 0.052669 2.5768E-05 0.34944 0.00017096 0.40211 0.00019673 489.2430794266755 23.188 0.48973 21.735 21.473 21.963 -1.4535 30 13 3 0 0 0 0.52396 1 3755 3755 18.146 2.2992 1 5191300 10486 7795 6737 6741 10620 10620 -0.01787136789903343 EEETSIKAA 9 Unmodified _EEETSIKAA_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.242929 976.471305 0.90167 0.00044114 -0.61306 -0.00029994 0.28861 0.0001412 489.242585285135 23.225 0.43016 21.672 21.474 21.904 -1.5532 -0.084902 -0.00051768 NaN 19.257 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 5357800 10487 7795 6737 6741 -0.01787136789903343 EEEVDLVMQ 9 Unmodified _EEEVDLVMQ_ 0 0 0 nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA;CDC42BPA|p.A1183*|1|0.41|ENSG00000143776|chr1:227031454-227031461|TGTCTGCT/-|frameshift_variant;CDC42BPA|p.T746Nfs*8|1|0.24|ENSG00000143776|chr1:227101004-227101005|-/T|frameshift_variant;CDC42BPA|p.V770Cfs*3|1|0.23|ENSG00000143776|chr1:227091934-227091934|T/-|frameshift_variant;ENST00000466538.1_1_1:227299979-227300497:-|nuORF nc|ENSG00000143776|Q5VT25-4|CDC42BPA nc|ENSG00000143776|Q5VT25-4|CDC42BPA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.774658203125 2 546.249897 1090.48524 0.39216 0.00021422 -0.073629 -4.022E-05 0.31854 0.000174 546.2500038164893 145.81 0.76468 140.81 140.43 141.19 -5 50 21 4 0 0 0 0.67531 1 28205 28205 7.9102 1.5561 1 5832600 10488 4518 6738 6742 10621 10621 -0.056382273531198734 EEEVFPLAM 9 Oxidation (M) _EEEVFPLAM(Oxidation (M))_ EEEVFPLAM(1) EEEVFPLAM(86) 0 0 1 ENSG00000110092|ENST00000227507|CCND1;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;ENSG00000118971|ENST00000261254|CCND2;ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000118971|P30279-2|CCND2 ENSG00000110092|ENST00000227507|CCND1;nc|ENSG00000118971|P30279-2|CCND2 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2807006835938 2 540.749533 1079.48451 0.28824 0.00015586 -0.14945 -8.0814E-05 0.13879 7.5051E-05 540.7493831627067 126.29 0.92288 126.29 125.79 126.71 0 45 25 2 0 0 0 0.025898 2 24884 24884;24935 86.121 65.25 1 3263200 10489 2564;12296 6739 6743 10622;10623 10622 30 -0.052050220021556015 EEEVFPLAM 9 Oxidation (M) _EEEVFPLAM(Oxidation (M))_ EEEVFPLAM(1) EEEVFPLAM(42) 0 0 1 ENSG00000110092|ENST00000227507|CCND1;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;ENSG00000118971|ENST00000261254|CCND2;ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000118971|P30279-2|CCND2 ENSG00000110092|ENST00000227507|CCND1;nc|ENSG00000118971|P30279-2|CCND2 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2637329101562 2 540.749533 1079.48451 0.18142 9.81E-05 -0.60408 -0.00032665 -0.42266 -0.00022855 540.7490124595894 131.06 1.0607 126.43 125.93 127 -4.6359 50 29 2 0 0 0 0.047515 1 25870 25870 42.232 22.842 1 2904500 10490 2564;12296 6739 6743 10624 10624 30 -0.052050220021556015 EEEVFPLAM 9 Oxidation (M) _EEEVFPLAM(Oxidation (M))_ EEEVFPLAM(1) EEEVFPLAM(40) 0 0 1 ENSG00000110092|ENST00000227507|CCND1;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;ENSG00000118971|ENST00000261254|CCND2;ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000118971|P30279-2|CCND2 ENSG00000110092|ENST00000227507|CCND1;nc|ENSG00000118971|P30279-2|CCND2 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2605590820312 2 540.749533 1079.48451 0.12065 6.5241E-05 -0.41018 -0.0002218 -0.28953 -0.00015656 540.7491754887452 131.48 0.34497 126.63 126.42 126.77 -4.8527 16 9 2 0 0 0 0.17588 1 25226 25226 40.449 22.314 1 1103200 10491 2564;12296 6739 6743 10625 10625 30 -0.052050220021556015 EEEVFPLAM 9 Oxidation (M) _EEEVFPLAM(Oxidation (M))_ EEEVFPLAM(1) EEEVFPLAM(82) 0 0 1 ENSG00000110092|ENST00000227507|CCND1;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;ENSG00000118971|ENST00000261254|CCND2;ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000118971|P30279-2|CCND2 ENSG00000110092|ENST00000227507|CCND1;nc|ENSG00000118971|P30279-2|CCND2 ENSG00000110092|ENST00000227507|CCND1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27587890625 2 540.749533 1079.48451 0.26325 0.00014235 0.11397 6.1631E-05 0.37722 0.00020398 540.7495604835019 130.99 0.99666 126.22 125.97 126.97 -4.7725 51 27 2 0 0 0 0.046017 1 25271 25271 81.864 55.523 1 2756300 10492 2564;12296 6739 6743 10626 10626 30 -0.052050220021556015 EEEVQGPPA 9 Unmodified _EEEVQGPPA_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.723388671875 2 478.221997 954.429441 -0.052501 -2.5107E-05 0.027296 1.3053E-05 -0.025205 -1.2054E-05 478.2219124449896 30.782 0.86748 30.782 30.417 31.284 0 56 24 3 0 0 0 0.041554 3 5557 5510;5557;5600 74.929 35.775 1 3713300 10493 5701 6740 6744 10627;10628;10629 10628 -0.04959692478416855 EEEVQGPPA 9 Unmodified _EEEVQGPPA_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7418212890625 2 478.221997 954.429441 0.068242 3.2635E-05 -0.67819 -0.00032432 -0.60995 -0.00029169 478.22166146706564 33.021 0.90491 30.79 30.434 31.339 -2.2305 46 25 2 0 0 0 0.01604 4 6015 5995;6015;6042;6092 96.285 44.146 1 4218300 10494 5701 6740 6744 10630;10631;10632;10633 10631 -0.04959692478416855 EEEVQGPPA 9 Unmodified _EEEVQGPPA_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74407958984375 2 478.221997 954.429441 0.22944 0.00010972 -0.62704 -0.00029986 -0.3976 -0.00019014 478.2216362088971 32.937 0.97712 30.79 30.416 31.393 -2.1468 52 27 2 0 0 0 0.029966 5 5753 5687;5737;5753;5780;5824 81.613 39.519 1 3850700 10495 5701 6740 6744 10634;10635;10636;10637;10638 10636 -0.04959692478416855 EEEVQGPPA 9 Unmodified _EEEVQGPPA_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.723388671875 2 478.221997 954.429441 0.42851 0.00020492 0.7075 0.00033834 1.136 0.00054327 478.22155861109513 32.992 1.2464 30.776 30.177 31.423 -2.2158 97 35 4 0 0 0 0.023387 3 5747 5698;5747;5795 88.904 40.558 1 3450700 10496 5701 6740 6744 10639;10640;10641 10640 -0.04959692478416855 EEEYEHME 8 Unmodified _EEEYEHME_ 0 0 0 ENSG00000180423|ENST00000326737|HARBI1 ENSG00000180423|ENST00000326737|HARBI1 ENSG00000180423|ENST00000326737|HARBI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.78125 2 548.200404 1094.38626 0.30878 0.00016927 1.1413 0.00062569 1.4501 0.00079496 548.7036299692742 67.051 0.52699 63.555 63.148 63.675 -3.4965 25 14 3 0 0 0 0.88445 1 12507 12507 0.12286 0.049601 1 1658600 10497 6674 6741 6745 10642 10642 -0.15716250318018865 EEEYEVDDYRH 11 Unmodified _EEEYEVDDYRH_ 0 0 0 REV__ENSG00000176381|ENST00000322583|PRR18 REV__ENSG00000176381|ENST00000322583|PRR18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3970336914062 2 742.302235 1482.58992 NaN NaN NaN NaN NaN NaN NaN 69.343 1 65.952 65.452 66.452 -3.3903 0 0 0 0.23698 1 13111 13111 1.0715 0 1 + 10498 18506 6742 6746 10643 10643 -0.132074343428485 EEEYPLDEE 9 Unmodified _EEEYPLDEE_ 0 0 0 REV__ENSG00000076924|ENST00000358368|XAB2 REV__ENSG00000076924|ENST00000358368|XAB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33447265625 2 576.732591 1151.45063 -0.086708 -5.0007E-05 3.7837 0.0021822 3.697 0.0021322 576.7327688506733 46.842 0.20747 43.976 43.858 44.066 -2.8666 7 5 2 0 0 0 0.8319 1 8534 8534 12.532 0 1 1045700 + 10499 14353 6743 6747 10644 10644 -0.11903771960237464 EEEYTTGSEVT 11 Unmodified _EEEYTTGSEVT_ 0 0 0 ENSG00000162929|ENST00000402291|SANBR;nc|ENSG00000162929|Q6NSI8-2|SANBR;nc|ENSG00000162929|Q6NSI8-3|SANBR ENSG00000162929|ENST00000402291|SANBR ENSG00000162929|ENST00000402291|SANBR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7638549804688 2 622.76188 1243.50921 NaN NaN NaN NaN NaN NaN NaN 160.15 1 154.92 154.42 155.42 -5.2299 0 0 0 0.22862 1 31091 31091 9.3831 3.6513 1 10500 5385 6744 6748 10645 10645 -0.10280715385761141 EEFAAALY 8 Unmodified _EEFAAALY_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2215576171875 2 457.218726 912.422899 0.26547 0.00012138 0.076742 3.5088E-05 0.34222 0.00015647 457.2186549336916 123.75 0.81343 123.75 123.31 124.13 0 43 22 3 0 0 0 0.16788 2 24364 24364;24407 49.669 23.328 1 3992900 10501 3477 6745 6749 10646;10647 10646 -0.03681585639162677 EEFAAALY 8 Unmodified _EEFAAALY_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2219543457031 2 457.218726 912.422899 -0.056365 -2.5771E-05 0.37453 0.00017124 0.31817 0.00014547 457.2187848987228 128.71 0.78131 124.08 123.65 124.43 -4.6292 47 21 3 0 0 0 0.53444 1 25376 25376 26.341 16.158 1 3366600 10502 3477 6745 6749 10648 10648 -0.03681585639162677 EEFAAALY 8 Unmodified _EEFAAALY_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22161865234375 2 457.218726 912.422899 0.063542 2.9053E-05 0.18631 8.5185E-05 0.24985 0.00011424 457.2187975993644 128.82 0.81017 124 123.63 124.44 -4.817 43 22 3 0 0 0 0.40661 2 24712 24712;24741 32.117 12.835 1 3022200 10503 3477 6745 6749 10649;10650 10649 -0.03681585639162677 EEFAAALY 8 Unmodified _EEFAAALY_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 457.218726 912.422899 0.14774 6.7551E-05 0.26803 0.00012255 0.41577 0.0001901 457.2187887776043 128.7 0.90321 123.96 123.56 124.46 -4.7408 0.010958 3.6018E-05 NaN 49.669 44 25 2 NaN NaN NaN NaN 0 NaN NaN 0 3235100 10504 3477 6745 6749 -0.03681585639162677 EEFAIMQTP 9 Unmodified _EEFAIMQTP_ 0 0 0 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2864990234375 2 533.2497 1064.48485 0.43862 0.0002339 -0.46988 -0.00025056 -0.031252 -1.6665E-05 533.2493994208286 136.82 0.6328 131.89 131.56 132.19 -4.9216 27 17 2 0 0 0 0.74655 1 26243 26243 21.747 5.8995 1 5334000 10505 1752 6746 6750 10651 10651 -0.04481602282316999 EEFAQSEEL 9 Unmodified _EEFAQSEEL_ 0 0 0 ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1;ENST00000512501.1_1_5:176884605-176884764:-|nuORF ENST00000472831.5_1_5:176884436-176895158:-|nuORF ENST00000472831.5_1_5:176884436-176895158:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.26611328125 2 541.237844 1080.46113 0.63841 0.00034553 2.1373 0.0011568 2.7757 0.0015023 541.7411650081929 81.157 0.6011 81.157 80.805 81.406 0 35 16 3 0 0 0 0.30618 1 15792 15792 42.095 13.608 1 2909300 10506 2761 6747 6751 10652 10652 -0.07587744515149097 EEFDEFSY 8 Unmodified _EEFDEFSY_ 0 0 0 REV__nc|ENSG00000173406|O75553-3|DAB1 REV__nc|ENSG00000173406|O75553-3|DAB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2809448242188 2 533.206012 1064.39747 NaN NaN NaN NaN NaN NaN NaN 57.348 1 54.454 53.954 54.954 -2.8944 0 0 0 0.2074 1 11004 11004 19.439 0 1 + 10507 24175 6748 6752 10653 10653 -0.13215104952223555 EEFDEFSY 8 Unmodified _EEFDEFSY_ 0 0 0 REV__nc|ENSG00000173406|O75553-3|DAB1 REV__nc|ENSG00000173406|O75553-3|DAB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2819213867188 2 533.206012 1064.39747 NaN NaN NaN NaN NaN NaN NaN 57.574 1 54.323 53.823 54.823 -3.2517 0 0 0 0.2074 1 10693 10693 19.439 0 1 + 10508 24175 6748 6752 10654 10654 -0.13215104952223555 EEFEIFYR 8 Unmodified _EEFEIFYR_ 0 0 0 REV__nc|ENSG00000128829|Q9P2K8-3|EIF2AK4 REV__nc|ENSG00000128829|Q9P2K8-3|EIF2AK4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.8951110839844 3 378.181835 1131.52368 NaN NaN NaN NaN NaN NaN NaN 60.58 1 57.647 57.147 58.147 -2.9333 0 0 0 0.23664 1 11661 11661 3.2813 0.65007 1 + 10509 13793 6749 6753 10655 10655 -0.03682553656312848 EEFEKVMVA 9 Unmodified _EEFEKVMVA_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2653198242188 2 541.26535 1080.51615 0.1723 9.326E-05 1.3435 0.00072721 1.5158 0.00082047 541.2654974330231 89.704 0.86896 89.704 89.281 90.15 0 100 24 6 0 0 0 0.063365 2 17558 17507;17558 66.457 25.785 1 31211000 10510 899 6750 6754 10656;10657 10657 -0.02089029248213592 EEFEKVMVA 9 Unmodified _EEFEKVMVA_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2655029296875 2 541.26535 1080.51615 0.21854 0.00011829 2.4304 0.0013155 2.6489 0.0014338 541.2654463695 93.656 1.0031 89.665 89.243 90.246 -3.9907 100 28 5 0 0 0 0.12612 1 18325 18325 47.594 3.7361 1 31712000 10511 899 6750 6754 10658 10658 -0.02089029248213592 EEFEKVMVA 9 Unmodified _EEFEKVMVA_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.265380859375 2 541.26535 1080.51615 0.2683 0.00014522 2.2394 0.0012121 2.5077 0.0013573 541.2653217461133 93.841 0.92825 89.698 89.245 90.173 -4.1435 106 26 5 0 0 0 0.072372 2 17863 17863;17908 63.961 35.147 1 34526000 10512 899 6750 6754 10659;10660 10659 -0.02089029248213592 EEFEKVMVA 9 Unmodified _EEFEKVMVA_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2655639648438 2 541.26535 1080.51615 0.1429 7.7349E-05 2.1612 0.0011698 2.3041 0.0012471 541.2654113638747 93.538 1.0027 89.694 89.26 90.263 -3.844 108 28 5 0 0 0 0.11219 2 17958 17867;17958 51.63 5.6089 1 27294000 10513 899 6750 6754 10661;10662 10662 -0.02089029248213592 EEFELDRYVRK 11 Unmodified _EEFELDRYVRK_ 0 0 0 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3793334960938 2 742.380623 1482.74669 NaN NaN NaN NaN NaN NaN NaN 157 1 151.71 151.21 152.21 -5.2854 0 0 0 0.22632 1 30463 30463 0 0 1 + 10514 13711 6751 6755 10663 10663 0.024628953380897656 EEFERRWRSLR 11 Unmodified _EEFERRWRSLR_ 0 0 0 nc|ENSG00000181409|Q6ZMQ8-3|AATK;AATK|p.L1059Tfs*5|1|0.32|ENSG00000181409|chr17:81120762-81120763|-/G|frameshift_variant;AATK|p.F1101Sfs*3|1|0.46|ENSG00000181409|chr17:81120634-81120634|A/-|frameshift_variant;ENSG00000181409|ENST00000326724|AATK nc|ENSG00000181409|Q6ZMQ8-3|AATK nc|ENSG00000181409|Q6ZMQ8-3|AATK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.281005859375 3 521.942812 1562.80661 -0.12573 -6.5623E-05 3.037 0.0015852 2.9113 0.0015195 521.9434621337037 149.6 0.21088 144.87 144.73 144.94 -4.7323 7 5 2 0 0 0 0.8117 1 29722 29722 2.084 0.75432 1 1076300 10515 5 6752 6756 10664 10664 0.04771630792015458 EEFEYEIETG 10 Unmodified _EEFEYEIETG_ 0 0 0 REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7805786132812 2 623.261516 1244.50848 0.0833 5.1918E-05 -0.35929 -0.00022393 -0.27599 -0.00017201 623.2613463480591 63.135 1.1603 63.135 62.589 63.749 0 78 32 4 0 0 0 0.59264 1 12136 12136 29.082 10.708 1 10094000 + 10516 22734 6753 6757 10665 10665 -0.1039951003481292 EEFEYEIETG 10 Unmodified _EEFEYEIETG_ 0 0 0 REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7814331054688 2 623.261516 1244.50848 0.51879 0.00032334 -0.99846 -0.0006223 -0.47967 -0.00029896 623.2608603071626 66.634 0.97945 63.307 62.85 63.83 -3.3268 70 27 3 0 0 0 0.79872 1 12495 12495 9.3831 0 1 10317000 + 10517 22734 6753 6757 10666 10666 -0.1039951003481292 EEFKALKTLT 10 Unmodified _EEFKALKTLT_ 0 0 0 nc|ENSG00000196712|P21359-4|NF1 nc|ENSG00000196712|P21359-4|NF1 nc|ENSG00000196712|P21359-4|NF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2692260742188 2 590.334621 1178.65469 NaN NaN NaN NaN NaN NaN NaN 124.25 1 119.52 119.02 120.02 -4.731 0 0 0 0.22588 1 23863 23863 10.824 0.75 1 10518 12537 6754 6758 10667 10667 0.07250836991761389 EEFKDAIE 8 Unmodified _EEFKDAIE_ 0 0 0 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2657775878906 2 490.732197 979.449842 0.43479 0.00021337 -0.34971 -0.00017161 0.085086 4.1755E-05 490.73196151873253 99.417 0.93945 99.417 98.922 99.862 0 37 26 2 0 0 0 0.81042 1 19489 19489 16.942 1.0951 1 2181800 10519 5039 6755 6759 10668 10668 -0.04070521818607631 EEFKITSF 8 Unmodified _EEFKITSF_ 0 0 0 ENSG00000088854|ENST00000252032|DNAAF9 ENSG00000088854|ENST00000252032|DNAAF9 ENSG00000088854|ENST00000252032|DNAAF9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 501.7707824707031 2 500.752933 999.491313 -0.14886 -7.4542E-05 0.57399 0.00028743 0.42513 0.00021289 500.7531210076824 131.24 0.7964 126.4 125.92 126.72 -4.8355 59 22 4 0 0 0 8448 1 25190 25190 35.996 29.604 1 9094400 10520 1737 6756 6760 10669 10669 -0.008453410592892396 EEFKITSF 8 Unmodified _EEFKITSF_ 0 0 0 ENSG00000088854|ENST00000252032|DNAAF9 ENSG00000088854|ENST00000252032|DNAAF9 ENSG00000088854|ENST00000252032|DNAAF9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 500.752933 999.491313 0.19328 9.6787E-05 0.18314 9.1707E-05 0.37642 0.00018849 500.752947525239 126.5 0.71602 126.5 126.1 126.82 0 0.077153 -0.00017836 NaN 35.996 48 19 3 NaN NaN NaN NaN 0 NaN NaN 0 11444000 10521 1737 6756 6760 -0.008453410592892396 EEFKITSF 8 Unmodified _EEFKITSF_ 0 0 0 ENSG00000088854|ENST00000252032|DNAAF9 ENSG00000088854|ENST00000252032|DNAAF9 ENSG00000088854|ENST00000252032|DNAAF9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 500.752933 999.491313 -0.024082 -1.2059E-05 0.39258 0.00019659 0.3685 0.00018453 500.75298672563406 131.05 0.74051 126.41 125.93 126.68 -4.6359 -0.0090265 3.1403E-05 NaN 35.996 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 10539000 10522 1737 6756 6760 -0.008453410592892396 EEFKITSF 8 Unmodified _EEFKITSF_ 0 0 0 ENSG00000088854|ENST00000252032|DNAAF9 ENSG00000088854|ENST00000252032|DNAAF9 ENSG00000088854|ENST00000252032|DNAAF9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 500.752933 999.491313 0.038043 1.905E-05 0.28028 0.00014035 0.31833 0.0001594 500.7529860458953 131.15 0.94801 126.38 125.84 126.78 -4.7725 -0.046772 -8.1062E-05 NaN 35.996 55 26 3 NaN NaN NaN NaN 0 NaN NaN 0 8325900 10523 1737 6756 6760 -0.008453410592892396 EEFKTYNY 8 Unmodified _EEFKTYNY_ 0 0 0 ENST00000428400.5_1_X:47085983-47086499:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16 ENST00000428400.5_1_X:47085983-47086499:+|nuORF ENST00000428400.5_1_X:47085983-47086499:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7713623046875 2 547.245472 1092.47639 0.014239 7.7924E-06 -0.20018 -0.00010955 -0.18594 -0.00010176 547.2455052021671 62.989 0.81252 62.989 62.519 63.331 0 52 22 3 0 0 0 0.23259 1 12086 12086 67.344 40.46 1 7425300 10524 2116 6757 6761 10670 10670 -0.06614832927266434 EEFKTYNY 8 Unmodified _EEFKTYNY_ 0 0 0 ENST00000428400.5_1_X:47085983-47086499:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16 ENST00000428400.5_1_X:47085983-47086499:+|nuORF ENST00000428400.5_1_X:47085983-47086499:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77001953125 2 547.245472 1092.47639 0.17721 9.6976E-05 0.021621 1.1832E-05 0.19883 0.00010881 547.2454513537124 66.446 0.83287 63.399 62.984 63.817 -3.047 65 23 4 0 0 0 0.043971 3 12847 12847;12922;12935 103.35 61.259 1 11966000 10525 2116 6757 6761 10671;10672;10673 10671 -0.06614832927266434 EEFKTYNY 8 Unmodified _EEFKTYNY_ 0 0 0 ENST00000428400.5_1_X:47085983-47086499:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16 ENST00000428400.5_1_X:47085983-47086499:+|nuORF ENST00000428400.5_1_X:47085983-47086499:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7667846679688 2 547.245472 1092.47639 0.30218 0.00016537 -0.054649 -2.9907E-05 0.24753 0.00013546 547.2454651985599 66.796 0.95314 63.3 62.795 63.748 -3.4965 63 26 3 0 0 0 0.060682 4 12510 12456;12510;12535;12561 85.272 47.113 1 6556900 10526 2116 6757 6761 10674;10675;10676;10677 10675 -0.06614832927266434 EEFKTYNY 8 Unmodified _EEFKTYNY_ 0 0 0 ENST00000428400.5_1_X:47085983-47086499:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16 ENST00000428400.5_1_X:47085983-47086499:+|nuORF ENST00000428400.5_1_X:47085983-47086499:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7809448242188 2 547.245472 1092.47639 0.39136 0.00021417 -0.20467 -0.00011201 0.18669 0.00010216 547.2453597462296 66.565 0.93659 63.239 62.712 63.648 -3.3268 77 26 4 0 0 0 0.043971 2 12520 12520;12570 103.35 61.259 1 9170200 10527 2116 6757 6761 10678;10679 10678 -0.06614832927266434 EEFKYLWNNIK 11 Unmodified _EEFKYLWNNIK_ 0 0 0 ENSG00000126247|ENST00000246533|CAPNS1;ENSG00000256812|ENST00000457326|CAPNS2 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3839721679688 2 742.382634 1482.75072 NaN NaN NaN NaN NaN NaN NaN 110.2 1 105.74 105.24 106.24 -4.4523 0 0 0 0.22632 1 21149 21149 0.0059557 0 1 10528 3423 6758 6762 10680 10680 0.02864984831876427 EEFLQELAT 9 Unmodified _EEFLQELAT_ 0 0 0 REV__ENSG00000106384|ENST00000223114|MOGAT3 REV__ENSG00000106384|ENST00000223114|MOGAT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2682495117188 2 540.266404 1078.51826 1.3167 0.00071139 -0.29703 -0.00016047 1.0197 0.00055092 540.2662954128837 25.246 0.6629 23.598 23.303 23.966 -1.6482 37 18 3 0 0 0 0.67531 1 4388 4388 7.9102 1.187 1 3371600 + 10529 15048 6759 6763 10681 10681 -0.017862772387616133 EEFLQQIQK 9 Unmodified _EEFLQQIQK_ 0 0 0 REV__ENSG00000165355|ENST00000298097|FBXO33 REV__ENSG00000165355|ENST00000298097|FBXO33 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.71221923828125 3 388.208273 1161.60299 0.092907 3.6067E-05 2.4173 0.00093841 2.5102 0.00097447 388.2084406060673 37.129 0.30553 34.781 34.655 34.96 -2.3479 9 8 2 0 0 0 0.58921 1 6565 6565 0.12781 0 1 183600 + 10530 17761 6760 6764 10682 10682 0.028650932978507626 EEFLQQIQK 9 Unmodified _EEFLQQIQK_ 0 0 0 REV__ENSG00000165355|ENST00000298097|FBXO33 REV__ENSG00000165355|ENST00000298097|FBXO33 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 388.208273 1161.60299 -0.61799 -0.00023991 2.5254 0.0009804 1.9075 0.00074049 388.2092139380856 36.916 0.27488 34.448 34.296 34.571 -2.4688 -0.16658 1.1359E-05 NaN 0.12781 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 290520 + 10531 17761 6760 6764 0.028650932978507626 EEFNQPLSV 9 Unmodified _EEFNQPLSV_ 0 0 0 nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL nc|ENSG00000123473|Q15468|STIL nc|ENSG00000123473|Q15468|STIL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2632446289062 2 531.758746 1061.50294 0.19738 0.00010496 0.052725 2.8037E-05 0.25011 0.000133 531.758679155894 109.1 0.87276 109.1 108.7 109.57 0 72 24 4 0 0 0 0.40602 1 21456 21456 25.399 4.9848 1 20761000 10532 3270 6761 6765 10683 10683 -0.02535144035960002 EEFNQPLSV 9 Unmodified _EEFNQPLSV_ 0 0 0 nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL nc|ENSG00000123473|Q15468|STIL nc|ENSG00000123473|Q15468|STIL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2634887695312 2 531.758746 1061.50294 -0.06608 -3.5139E-05 0.61984 0.00032961 0.55376 0.00029447 531.7590023122862 113.78 0.94383 109.33 108.9 109.85 -4.4539 79 26 4 0 0 0 0.57447 1 22437 22437 14.838 2.3067 1 37979000 10533 3270 6761 6765 10684 10684 -0.02535144035960002 EEFNQPLSV 9 Unmodified _EEFNQPLSV_ 0 0 0 nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL nc|ENSG00000123473|Q15468|STIL nc|ENSG00000123473|Q15468|STIL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.263671875 2 531.758746 1061.50294 0.43273 0.00023011 0.19756 0.00010505 0.63029 0.00033516 531.7587560750223 113.93 0.94357 109.37 108.93 109.87 -4.555 76 26 4 0 0 0 0.13708 1 21860 21860 46.021 22 1 37150000 10534 3270 6761 6765 10685 10685 -0.02535144035960002 EEFNQPLSV 9 Unmodified _EEFNQPLSV_ 0 0 0 nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL nc|ENSG00000123473|Q15468|STIL nc|ENSG00000123473|Q15468|STIL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2642822265625 2 531.758746 1061.50294 0.60905 0.00032387 0.099935 5.3141E-05 0.70898 0.00037701 531.758717210869 113.65 0.94522 109.38 108.91 109.86 -4.2726 82 26 4 0 0 0 0.25702 5 21853 21831;21838;21853;21888;21900 34.102 16.99 1 32605000 10535 3270 6761 6765 10686;10687;10688;10689;10690 10688 -0.02535144035960002 EEFPAFPRA 9 Unmodified _EEFPAFPRA_ 0 0 0 SNX15|p.R72C|1|0.23|ENSG00000110025|chr11:65032509-65032509|C/T|missense_variant;nc|ENSG00000110025|Q9NRS6-2|SNX15;ENST00000526702.1_1_11:64795036-64803275:+|nuORF;ENSG00000110025|ENST00000377244|SNX15 SNX15|p.R72C|1|0.23|ENSG00000110025|chr11:65032509-65032509|C/T|missense_variant SNX15|p.R72C|1|0.23|ENSG00000110025|chr11:65032509-65032509|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2667236328125 2 532.263999 1062.51345 0.28862 0.00015362 0.027796 1.4795E-05 0.31642 0.00016842 532.2639660071371 121.77 1.0693 117.23 116.64 117.71 -4.5476 72 29 3 0 0 0 0.081765 3 23984 23944;23984;24033 61.357 21.347 1 9793900 10536 2554 6762 6766 10691;10692;10693 10692 -0.015311165908542534 EEFPAFPRA 9 Unmodified _EEFPAFPRA_ 0 0 0 SNX15|p.R72C|1|0.23|ENSG00000110025|chr11:65032509-65032509|C/T|missense_variant;nc|ENSG00000110025|Q9NRS6-2|SNX15;ENST00000526702.1_1_11:64795036-64803275:+|nuORF;ENSG00000110025|ENST00000377244|SNX15 SNX15|p.R72C|1|0.23|ENSG00000110025|chr11:65032509-65032509|C/T|missense_variant SNX15|p.R72C|1|0.23|ENSG00000110025|chr11:65032509-65032509|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26708984375 2 532.263999 1062.51345 0.926 0.00049288 -0.58827 -0.00031312 0.33773 0.00017976 532.2635863053604 121.81 1.2547 117.13 116.56 117.82 -4.6873 79 35 3 0 0 0 0.11032 3 23330 23330;23414;23461 52.268 27.594 1 9620000 10537 2554 6762 6766 10694;10695;10696 10694 -0.015311165908542534 EEFPAFPRA 9 Unmodified _EEFPAFPRA_ 0 0 0 SNX15|p.R72C|1|0.23|ENSG00000110025|chr11:65032509-65032509|C/T|missense_variant;nc|ENSG00000110025|Q9NRS6-2|SNX15;ENST00000526702.1_1_11:64795036-64803275:+|nuORF;ENSG00000110025|ENST00000377244|SNX15 SNX15|p.R72C|1|0.23|ENSG00000110025|chr11:65032509-65032509|C/T|missense_variant SNX15|p.R72C|1|0.23|ENSG00000110025|chr11:65032509-65032509|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2802734375 2 532.263999 1062.51345 0.38279 0.00020375 -0.04481 -2.3851E-05 0.33798 0.00017989 532.2638767192917 121.48 1.012 116.95 116.53 117.55 -4.5305 81 27 4 0 0 0 0.081765 2 23414 23351;23414 61.357 29.24 1 7725900 10538 2554 6762 6766 10697;10698 10698 -0.015311165908542534 EEFPAFPRA 9 Unmodified _EEFPAFPRA_ 0 0 0 SNX15|p.R72C|1|0.23|ENSG00000110025|chr11:65032509-65032509|C/T|missense_variant;nc|ENSG00000110025|Q9NRS6-2|SNX15;ENST00000526702.1_1_11:64795036-64803275:+|nuORF;ENSG00000110025|ENST00000377244|SNX15 SNX15|p.R72C|1|0.23|ENSG00000110025|chr11:65032509-65032509|C/T|missense_variant SNX15|p.R72C|1|0.23|ENSG00000110025|chr11:65032509-65032509|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.263999 1062.51345 0.07808 4.1559E-05 0.29401 0.00015649 0.37209 0.00019805 532.2640502243878 117.07 0.98023 117.07 116.57 117.55 0 -0.024772 0.00041081 NaN 61.357 59 27 3 NaN NaN NaN NaN 0 NaN NaN 0 9021200 10539 2554 6762 6766 -0.015311165908542534 EEFPELSGPF 10 Unmodified _EEFPELSGPF_ 0 0 0 ENST00000584580.1_1_17:45912634-45914483:+|nuORF;ENSG00000141294|ENST00000269025|LRRC46 ENST00000584580.1_1_17:45912634-45914483:+|nuORF ENST00000584580.1_1_17:45912634-45914483:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3164672851562 2 576.266404 1150.51826 NaN NaN NaN NaN NaN NaN NaN 75.1 1 71.506 71.006 72.006 -3.594 0 0 0 0.22576 1 14273 14273 14.838 0 1 10540 4353 6763 6767 10699 10699 -0.05098277238744231 EEFPQCNCPI 10 Unmodified _EEFPQCNCPI_ 0 0 0 BRINP1|p.T281M|1|0.13|ENSG00000078725|chr9:119213999-119213999|G/A|missense_variant;nc|ENSG00000078725|O60477-2|BRINP1;ENSG00000078725|ENST00000265922|BRINP1 BRINP1|p.T281M|1|0.13|ENSG00000078725|chr9:119213999-119213999|G/A|missense_variant BRINP1|p.T281M|1|0.13|ENSG00000078725|chr9:119213999-119213999|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2593994140625 2 590.244092 1178.47363 NaN NaN NaN NaN NaN NaN NaN 124.52 1 119.75 119.25 120.25 -4.7681 0 0 0 0.22535 1 23913 23913 20.454 2.3186 1 10541 333 6764 6768 10700 10700 -0.1084674764808824 EEFPSFGA 8 Unmodified _EEFPSFGA_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000494862.1_1_2:242169018-242169382:-|nuORF;ENST00000484412.1_1_2:242169018-242170248:-|nuORF;ENST00000487169.5_1_2:242169018-242169255:-|nuORF ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242169018-242169255:-|nuORF ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 885.3888549804688 1 883.383225 882.375948 0.50471 0.00044585 -0.13804 -0.00012194 0.36667 0.00032391 883.3829633681089 119.44 1.288 119.44 118.85 120.14 0 107 36 4 0 0 0 0.0799 4 23472 23472;23517;23565;23607 67.035 40.694 1 66516000 10542 2877;10466 6765 6769 10701;10702;10703;10704 10701 -0.06994445190275655 EEFPSFGA 8 Unmodified _EEFPSFGA_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000494862.1_1_2:242169018-242169382:-|nuORF;ENST00000484412.1_1_2:242169018-242170248:-|nuORF;ENST00000487169.5_1_2:242169018-242169255:-|nuORF ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242169018-242169255:-|nuORF ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 885.3881225585938 1 883.383225 882.375948 0.43008 0.00037993 -0.14288 -0.00012621 0.28721 0.00025371 883.383007574085 124.43 1.3314 119.85 119.23 120.57 -4.5757 111 37 4 0 0 0 0.14825 5 24464 24464;24509;24553;24590;24602 53.576 28.902 1 69782000 10543 2877;10466 6765 6769 10705;10706;10707;10708;10709 10705 -0.06994445190275655 EEFPSFGA 8 Unmodified _EEFPSFGA_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000494862.1_1_2:242169018-242169382:-|nuORF;ENST00000484412.1_1_2:242169018-242170248:-|nuORF;ENST00000487169.5_1_2:242169018-242169255:-|nuORF ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242169018-242169255:-|nuORF ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 885.3896484375 1 883.383225 882.375948 0.61914 0.00054693 -0.23976 -0.0002118 0.37937 0.00033513 883.3828999953478 124.63 1.3615 119.86 119.21 120.58 -4.7681 107 38 4 0 0 0 0.13334 3 23912 23862;23912;23962 56.541 22.247 1 53923000 10544 2877;10466 6765 6769 10710;10711;10712 10711 -0.06994445190275655 EEFPSFGA 8 Unmodified _EEFPSFGA_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000494862.1_1_2:242169018-242169382:-|nuORF;ENST00000484412.1_1_2:242169018-242170248:-|nuORF;ENST00000487169.5_1_2:242169018-242169255:-|nuORF ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242169018-242169255:-|nuORF ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 885.3895263671875 1 883.383225 882.375948 0.40322 0.0003562 -0.00964 -8.5158E-06 0.39358 0.00034768 883.383078338542 124.31 1.4203 119.72 119.13 120.55 -4.5926 116 39 4 0 0 0 0.13334 4 23891 23849;23891;23933;23977 56.541 24.424 1 58425000 10545 2877;10466 6765 6769 10713;10714;10715;10716 10714 -0.06994445190275655 EEFRASEL 8 Unmodified _EEFRASEL_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26751708984375 2 490.737814 979.461075 0.005334 2.6176E-06 0.14068 6.9035E-05 0.14601 7.1653E-05 490.73782234108586 70.555 0.9375 70.555 70.102 71.039 0 80 26 4 0 0 0 0.023254 1 13679 13679 114.65 53.292 1 79723000 10546 190 6766 6770 10717 10717 -0.02947699724472841 EEFRASEL 8 Unmodified _EEFRASEL_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2680969238281 2 490.737814 979.461075 0.014001 6.8707E-06 0.071751 3.5211E-05 0.085752 4.2082E-05 490.73782862449497 73.85 1.0138 70.486 70.009 71.022 -3.3643 104 28 5 0 0 0 4.7765E-05 1 14403 14403 134.3 49.024 1 151770000 10547 190 6766 6770 10718 10718 -0.02947699724472841 EEFRASEL 8 Unmodified _EEFRASEL_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2568664550781 2 490.737814 979.461075 0.27262 0.00013378 -0.15066 -7.3932E-05 0.12196 5.9852E-05 490.7377043569679 74.223 1.039 70.546 70.033 71.072 -3.6764 100 29 5 0 0 0 0.023254 1 14065 14065 103.35 41.996 1 103610000 10548 190 6766 6770 10719 10719 -0.02947699724472841 EEFRASEL 8 Unmodified _EEFRASEL_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2678527832031 2 490.737814 979.461075 0.13678 6.7121E-05 -0.018869 -9.2596E-06 0.11791 5.7861E-05 490.7377690656866 74.114 1.2916 70.52 69.978 71.269 -3.594 110 36 5 0 0 0 0.023254 1 14044 14044 114.65 43.515 1 141710000 10549 190 6766 6770 10720 10720 -0.02947699724472841 EEFREFNKY 9 Unmodified _EEFREFNKY_ 0 0 0 nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF nc|ENSG00000293552|Q9H3R0-2|KDM4C nc|ENSG00000293552|Q9H3R0-2|KDM4C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.3352966308594 3 421.199777 1260.5775 -0.26919 -0.00011338 0.31176 0.00013131 0.042571 1.7931E-05 421.1998470352211 70.471 0.59928 67.222 66.966 67.565 -3.2492 49 16 4 0 0 0 0.86532 1 13670 13670 2.7352 1.5204 1 4890500 10550 2412 6767 6771 10721 10721 -0.042363812245639565 EEFREFNKY 9 Unmodified _EEFREFNKY_ 0 0 0 nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF nc|ENSG00000293552|Q9H3R0-2|KDM4C nc|ENSG00000293552|Q9H3R0-2|KDM4C MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 421.199777 1260.5775 -0.24953 -0.0001051 0.32559 0.00013714 0.076056 3.2035E-05 421.19981334868464 67.022 0.53161 67.022 66.731 67.262 0 -0.13289 0.00028786 NaN 2.7352 38 14 3 NaN NaN NaN NaN 0 NaN NaN 0 7783200 10551 2412 6767 6771 -0.042363812245639565 EEFREFNKY 9 Unmodified _EEFREFNKY_ 0 0 0 nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF nc|ENSG00000293552|Q9H3R0-2|KDM4C nc|ENSG00000293552|Q9H3R0-2|KDM4C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 421.199777 1260.5775 0.32964 0.00013884 -0.23168 -9.7583E-05 0.097961 4.1261E-05 421.19962827384074 70.762 0.55882 67.182 66.911 67.47 -3.5798 0.027221 -0.00041631 NaN 2.7352 46 15 4 NaN NaN NaN NaN 0 NaN NaN 0 5470600 10552 2412 6767 6771 -0.042363812245639565 EEFREFNKY 9 Unmodified _EEFREFNKY_ 0 0 0 nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF nc|ENSG00000293552|Q9H3R0-2|KDM4C nc|ENSG00000293552|Q9H3R0-2|KDM4C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 421.199777 1260.5775 0.038978 1.6417E-05 0.078847 3.321E-05 0.11782 4.9628E-05 421.19974099528787 70.66 0.60313 67.193 66.882 67.486 -3.467 0.03822 -2.3927E-05 NaN 2.7352 42 16 3 NaN NaN NaN NaN 0 NaN NaN 0 6532200 10553 2412 6767 6771 -0.042363812245639565 EEFRTYEA 8 Unmodified _EEFRTYEA_ 0 0 0 ENSG00000135870|ENST00000367696|RC3H1;nc|ENSG00000135870|Q5TC82-2|RC3H1 ENSG00000135870|ENST00000367696|RC3H1 ENSG00000135870|ENST00000367696|RC3H1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2810668945312 2 522.735271 1043.45599 -0.37972 -0.00019849 -0.32423 -0.00016949 -0.70396 -0.00036798 522.7350612147045 51.871 0.57358 48.988 48.631 49.204 -2.8824 35 16 3 0 0 0 0.67739 1 9838 9838 31.268 9.7314 1 3776800 10554 3959 6768 6772 10722 10722 -0.06400003587077663 EEFRTYEA 8 Unmodified _EEFRTYEA_ 0 0 0 ENSG00000135870|ENST00000367696|RC3H1;nc|ENSG00000135870|Q5TC82-2|RC3H1 ENSG00000135870|ENST00000367696|RC3H1 ENSG00000135870|ENST00000367696|RC3H1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2799072265625 2 522.735271 1043.45599 -0.61787 -0.00032298 -0.42382 -0.00022155 -1.0417 -0.00054453 522.7349345197551 52.054 0.63 48.966 48.604 49.234 -3.0876 28 17 2 0 0 0 0.35319 1 9558 9558 51.63 30.093 1 2797800 10555 3959 6768 6772 10723 10723 -0.06400003587077663 EEFSHIHKP 9 Unmodified _EEFSHIHKP_ 0 0 0 ENST00000359314.5_1_6:47501434-47512410:+|nuORF ENST00000359314.5_1_6:47501434-47512410:+|nuORF ENST00000359314.5_1_6:47501434-47512410:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2094421386719 3 375.189212 1122.54581 0.089655 3.3638E-05 -0.15669 -5.8788E-05 -0.067033 -2.515E-05 375.1890626185454 31.691 3.6953 29.46 26.775 30.47 -2.2305 221 104 4 0 0 0 0.41444 2 5677 5540;5677 24.882 7.4389 1 5639900 10556 8999 6769 6773 10724;10725 10725 -0.010563291878725067 EEFSHIHKP 9 Unmodified _EEFSHIHKP_ 0 0 0 ENST00000359314.5_1_6:47501434-47512410:+|nuORF ENST00000359314.5_1_6:47501434-47512410:+|nuORF ENST00000359314.5_1_6:47501434-47512410:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21319580078125 3 375.189212 1122.54581 0.30329 0.00011379 -0.46554 -0.00017467 -0.16225 -6.0875E-05 375.1889873018052 31.275 3.511 29.248 26.881 30.392 -2.0264 204 99 3 0 0 0 0.4999 1 5425 5425 19.626 6.0111 1 5877100 10557 8999 6769 6773 10726 10726 -0.010563291878725067 EEFSHIHKP 9 Unmodified _EEFSHIHKP_ 0 0 0 ENST00000359314.5_1_6:47501434-47512410:+|nuORF ENST00000359314.5_1_6:47501434-47512410:+|nuORF ENST00000359314.5_1_6:47501434-47512410:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2094421386719 3 375.189212 1122.54581 -0.18624 -6.9875E-05 0.031179 1.1698E-05 -0.15506 -5.8177E-05 375.1891693158042 31.329 3.5962 29.181 26.891 30.487 -2.1483 228 102 4 0 0 0 0.20546 3 5370 5370;5545;5548 37.075 24.502 1 5145400 10558 8999 6769 6773 10727;10728;10729 10727 -0.010563291878725067 EEFSYGYSL 9 Unmodified _EEFSYGYSL_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7777099609375 2 547.73748 1093.46041 0.32798 0.00017965 0.066175 3.6247E-05 0.39415 0.00021589 547.7374814199679 131.62 0.59538 131.62 131.19 131.78 0 29 16 2 0 0 0 0.32428 1 26035 26035 30.225 12.09 1 5392500 10559 4960 6770 6774 10730 10730 -0.0825853916419419 EEFSYGYSL 9 Unmodified _EEFSYGYSL_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7702026367188 2 547.73748 1093.46041 0.20545 0.00011253 -0.023552 -1.2901E-05 0.18189 9.963E-05 547.7373726117813 136.82 0.80914 132.18 131.78 132.59 -4.6399 43 22 3 0 0 0 0.015242 3 27005 26946;27005;27065 97.075 39.603 1 7089700 10560 4960 6770 6774 10731;10732;10733 10732 -0.0825853916419419 EEFSYGYSL 9 Unmodified _EEFSYGYSL_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7826538085938 2 547.73748 1093.46041 0.089047 4.8774E-05 -0.039221 -2.1483E-05 0.049826 2.7291E-05 547.7374381567068 137.04 0.80701 132.12 131.67 132.47 -4.9215 48 22 3 0 0 0 0.015242 4 26336 26336;26351;26374;26404 97.075 41.94 1 7003900 10561 4960 6770 6774 10734;10735;10736;10737 10734 -0.0825853916419419 EEFSYGYSL 9 Unmodified _EEFSYGYSL_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7778930664062 2 547.73748 1093.46041 0.30861 0.00016904 -0.26194 -0.00014348 0.046673 2.5565E-05 547.7372061270225 136.84 0.79451 132 131.58 132.38 -4.84 41 22 2 0 0 0 4.037E-06 4 26401 26296;26328;26364;26401 77.984 59.258 1 6253000 10562 4960 6770 6774 10738;10739;10740;10741 10741 -0.0825853916419419 EEFVIHAL 8 Unmodified _EEFVIHAL_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.D657Vfs*8|1|0.05|ENSG00000144426|chr2:203110256-203110257|-/TAAAAAA|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;ENST00000478884.5_1_2:203881095-203927086:+|nuORF;NBEAL1|p.R472Sfs*8|1|0.06|ENSG00000144426|chr2:203107741-203107742|-/CAACATA|frameshift_variant;NBEAL1|p.S520Efs*20|1|0.39|ENSG00000144426|chr2:203107879-203107880|-/G|frameshift_variant nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7421875 2 479.255643 956.496732 -0.052373 -2.51E-05 0.66062 0.00031661 0.60825 0.00029151 479.25580634671627 134.09 0.72548 134.09 133.77 134.49 0 43 20 3 0 0 0 0.47513 1 26587 26587 42.968 10.851 1 4776100 10563 4552 6771 6775 10742 10742 0.01674382523174245 EEFVIHAL 8 Unmodified _EEFVIHAL_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.D657Vfs*8|1|0.05|ENSG00000144426|chr2:203110256-203110257|-/TAAAAAA|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;ENST00000478884.5_1_2:203881095-203927086:+|nuORF;NBEAL1|p.R472Sfs*8|1|0.06|ENSG00000144426|chr2:203107741-203107742|-/CAACATA|frameshift_variant;NBEAL1|p.S520Efs*20|1|0.39|ENSG00000144426|chr2:203107879-203107880|-/G|frameshift_variant nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 480.2693786621094 2 479.255643 956.496732 0.044923 2.153E-05 0.55569 0.00026632 0.60061 0.00028785 479.25578498699787 138.43 0.76822 133.78 133.53 134.3 -4.6413 47 21 3 0 0 0 8448 1 27367 27367 69.105 45.315 1 3338500 10564 4552 6771 6775 10743 10743 0.01674382523174245 EEFVIHAL 8 Unmodified _EEFVIHAL_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.D657Vfs*8|1|0.05|ENSG00000144426|chr2:203110256-203110257|-/TAAAAAA|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant;ENST00000478884.5_1_2:203881095-203927086:+|nuORF;NBEAL1|p.R472Sfs*8|1|0.06|ENSG00000144426|chr2:203107741-203107742|-/CAACATA|frameshift_variant;NBEAL1|p.S520Efs*20|1|0.39|ENSG00000144426|chr2:203107879-203107880|-/G|frameshift_variant nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7314147949219 2 479.255643 956.496732 0.076226 3.6532E-05 0.69724 0.00033416 0.77346 0.00037069 479.25592415384983 138.76 0.812 133.81 133.46 134.27 -4.952 41 22 2 0 0 0 0.59799 1 26681 26681 28.173 13.592 1 3413000 10565 4552 6771 6775 10744 10744 0.01674382523174245 EEFVQMMTA 9 Unmodified _EEFVQMMTA_ 0 0 0 ENST00000597868.5_1_19:47111871-47112407:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2 ENST00000597868.5_1_19:47111871-47112407:+|nuORF ENST00000597868.5_1_19:47111871-47112407:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7899780273438 2 543.235735 1084.45692 0.33603 0.00018254 0.32019 0.00017394 0.65622 0.00035648 543.2359380875879 135.32 0.68698 135.32 134.99 135.67 0 31 19 2 0 0 0 0.034704 1 26815 26815 78.149 62.381 1 4861200 10566 4531 6772 6776 10745 10745 -0.08193248534030317 EEFVQMMTA 9 Unmodified _EEFVQMMTA_ 0 0 0 ENST00000597868.5_1_19:47111871-47112407:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2 ENST00000597868.5_1_19:47111871-47112407:+|nuORF ENST00000597868.5_1_19:47111871-47112407:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7769775390625 2 543.235735 1084.45692 0.26544 0.0001442 -0.036245 -1.9689E-05 0.2292 0.00012451 543.2358211172091 140.3 0.81424 135.65 135.35 136.16 -4.6439 49 22 3 0 0 0 0.07121 1 27660 27660 78.149 61.207 1 7618800 10567 4531 6772 6776 10746 10746 -0.08193248534030317 EEFVQMMTA 9 Unmodified _EEFVQMMTA_ 0 0 0 ENST00000597868.5_1_19:47111871-47112407:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2 ENST00000597868.5_1_19:47111871-47112407:+|nuORF ENST00000597868.5_1_19:47111871-47112407:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.778564453125 2 543.235735 1084.45692 0.098958 5.3757E-05 0.27234 0.00014795 0.3713 0.0002017 543.235829368032 140.58 0.80891 135.59 135.25 136.06 -4.9877 47 22 3 0 0 0 0.07121 1 27097 27097 78.149 55.001 1 7182000 10568 4531 6772 6776 10747 10747 -0.08193248534030317 EEFVQMMTA 9 Unmodified _EEFVQMMTA_ 0 0 0 ENST00000597868.5_1_19:47111871-47112407:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2 ENST00000597868.5_1_19:47111871-47112407:+|nuORF ENST00000597868.5_1_19:47111871-47112407:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77685546875 2 543.235735 1084.45692 0.3515 0.00019095 -0.42976 -0.00023346 -0.078254 -4.2511E-05 543.235683146127 140.51 0.48724 135.64 135.32 135.81 -4.8678 32 13 3 0 0 0 0.07121 1 27063 27063 78.149 55.001 1 3815100 10569 4531 6772 6776 10748 10748 -0.08193248534030317 EEFVRIKCG 9 Unmodified _EEFVRIKCG_ 0 0 0 tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1 tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1 tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.279296875 2 540.778959 1079.54336 -0.1847 -9.988E-05 -1.4193 -0.00076753 -1.604 -0.00086741 541.2797446415681 110.12 1.4585 105.74 104.92 106.38 -4.3776 109 41 4 0 0 0 0.2213 1 21587 21587 4.477 1.5944 1 5102700 10570 26425 6773 6777 10749 10749 0.006774990828262162 EEFVVEKV 8 Unmodified _EEFVVEKV_ 0 0 0 ENSG00000122565|ENST00000396386|CBX3 ENSG00000122565|ENST00000396386|CBX3 ENSG00000122565|ENST00000396386|CBX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2630920410156 2 489.760758 977.506963 0.098761 4.8369E-05 0.339 0.00016603 0.43776 0.0002144 489.7606902396904 87.851 0.62576 87.851 87.431 88.057 0 28 17 2 0 0 0 0.47729 1 17165 17165 29.082 7.3349 1 1569900 10571 3232 6774 6778 10750 10750 0.017309454577684846 EEFVVEKV 8 Unmodified _EEFVVEKV_ 0 0 0 ENSG00000122565|ENST00000396386|CBX3 ENSG00000122565|ENST00000396386|CBX3 ENSG00000122565|ENST00000396386|CBX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2628479003906 2 489.760758 977.506963 0.076702 3.7566E-05 0.18545 9.0827E-05 0.26215 0.00012839 489.7605590070767 91.509 0.61776 87.584 87.206 87.823 -3.9251 32 17 2 0 0 0 0.061929 2 17927 17871;17927 111.29 47.051 1 2155600 10572 3232 6774 6778 10751;10752 10752 0.017309454577684846 EEFVVEKV 8 Unmodified _EEFVVEKV_ 0 0 0 ENSG00000122565|ENST00000396386|CBX3 ENSG00000122565|ENST00000396386|CBX3 ENSG00000122565|ENST00000396386|CBX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2762756347656 2 489.760758 977.506963 0.4079 0.00019977 -0.27742 -0.00013587 0.13048 6.3906E-05 489.76046179938265 91.743 0.55042 87.649 87.325 87.875 -4.0946 26 15 2 0 0 0 0.39104 2 17431 17431;17499 32.786 11.039 1 2553800 10573 3232 6774 6778 10753;10754 10753 0.017309454577684846 EEFVVEKV 8 Unmodified _EEFVVEKV_ 0 0 0 ENSG00000122565|ENST00000396386|CBX3 ENSG00000122565|ENST00000396386|CBX3 ENSG00000122565|ENST00000396386|CBX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26312255859375 2 489.760758 977.506963 -0.11823 -5.7906E-05 0.45865 0.00022463 0.34041 0.00016672 489.7607376104354 91.482 0.52159 87.674 87.374 87.896 -3.8083 29 14 3 0 0 0 0.12259 3 17498 17494;17498;17543 58.679 34.228 1 2091000 10574 3232 6774 6778 10755;10756;10757 10756 0.017309454577684846 EEFWCITD 8 Unmodified _EEFWCITD_ 0 0 0 REV__ENST00000490936.5_1_X:153577219-153578780:-|nuORF REV__ENST00000490936.5_1_X:153577219-153578780:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 348.143798828125 3 348.144392 1041.41135 NaN NaN NaN NaN NaN NaN NaN 69.221 1 69.221 68.721 69.721 0 0 0 0 0.21486 1 13397 13397 1.4819 0.41044 1 + 10575 22306 6775 6779 10758 10758 -0.10770150724806626 EEGADSGEEDG 11 Unmodified _EEGADSGEEDG_ 0 0 0 ENSG00000104714|ENST00000262109|ERICH1 ENSG00000104714|ENST00000262109|ERICH1 ENSG00000104714|ENST00000262109|ERICH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7698974609375 2 547.691455 1093.36836 0.26636 0.00014588 -0.70596 -0.00038665 -0.4396 -0.00024076 547.6906942758528 145.5 0.14127 140.83 140.75 140.89 -4.6694 5 3 2 0 0 0 0.96118 1 28846 28846 2.7352 1.0826 1 1180300 10576 2247 6776 6780 10759 10759 -0.17459294039167617 EEGAFPFRL 9 Unmodified _EEGAFPFRL_ 0 0 0 ENSG00000130158|ENST00000294618|DOCK6;ENST00000591750.1_1_19:11346944-11347244:-|nuORF ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.270263671875 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 70.465 1 67.215 66.715 67.715 -3.2492 0 0 0 0.22621 1 13712 13712 15.847 1.0089 1 10577 3588 6777 6781 10760 10760 -0.0005883007379452465 EEGAHDLYMD 10 Unmodified _EEGAHDLYMD_ 0 0 0 ENST00000431534.5_1_22:41925289-41928713:-|nuORF;nc|ENSG00000100413|Q9Y535-2|POLR3H;ENSG00000100413|ENST00000355209|POLR3H ENST00000431534.5_1_22:41925289-41928713:-|nuORF ENST00000431534.5_1_22:41925289-41928713:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2674560546875 2 590.234778 1178.455 NaN NaN NaN NaN NaN NaN NaN 49.908 1 46.909 46.409 47.409 -2.999 0 0 0 0.22588 1 9129 9129 10.074 1.4806 1 10578 1973 6778 6782 10761 10761 -0.12708586018311507 EEGAIERL 8 Unmodified _EEGAIERL_ 0 0 0 REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6 REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2242736816406 2 458.740357 915.46616 -0.2451 -0.00011244 0.62272 0.00028567 0.37762 0.00017323 458.7407169745183 50.891 0.95811 48.008 47.571 48.529 -2.8824 43 26 2 0 0 0 0.93477 1 9735 9735 18.135 2.2878 1 1360300 + 10579 19618 6779 6783 10762 10762 0.005046041381433497 EEGAIERL 8 Unmodified _EEGAIERL_ 0 0 0 REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6 REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2393493652344 2 458.740357 915.46616 -0.066897 -3.0688E-05 0.34041 0.00015616 0.27351 0.00012547 458.7405254363138 51.049 1.0497 47.998 47.54 48.589 -3.0517 45 29 2 0 0 0 0.93477 1 9476 9476 18.135 2.2878 1 1292000 + 10580 19618 6779 6783 10763 10763 0.005046041381433497 EEGAPSAAAL 10 Unmodified _EEGAPSAAAL_ 0 0 0 ENST00000464876.5_1_9:139914760-139916113:-|nuORF;ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ABCA2|p.F605Lfs*4|1|0.21|ENSG00000107331|chr9:137018723-137018723|A/-|frameshift_variant;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;ABCA2|p.G2110Afs*11|1|0.41|ENSG00000107331|chr9:137010217-137010217|C/-|frameshift_variant;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2 ENST00000464876.5_1_9:139914760-139916113:-|nuORF ENST00000464876.5_1_9:139914760-139916113:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2244567871094 2 458.224539 914.434526 -0.31577 -0.0001447 0.54094 0.00024787 0.22516 0.00010317 458.2247154695287 53.461 0.69398 50.577 50.283 50.977 -2.8837 38 19 2 0 0 0 0.050917 2 10220 10220;10222 65.235 12.967 1 7286200 10581 10 6780 6784 10764;10765 10764 -0.026113886158100286 EEGAPSAAAL 10 Unmodified _EEGAPSAAAL_ 0 0 0 ENST00000464876.5_1_9:139914760-139916113:-|nuORF;ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ABCA2|p.F605Lfs*4|1|0.21|ENSG00000107331|chr9:137018723-137018723|A/-|frameshift_variant;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;ABCA2|p.G2110Afs*11|1|0.41|ENSG00000107331|chr9:137010217-137010217|C/-|frameshift_variant;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2 ENST00000464876.5_1_9:139914760-139916113:-|nuORF ENST00000464876.5_1_9:139914760-139916113:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22418212890625 2 458.224539 914.434526 -0.028417 -1.3022E-05 -0.67887 -0.00031107 -0.70729 -0.0003241 458.22416968700986 49.085 1.4356 46.086 45.468 46.904 -2.999 100 40 5 0 0 0 0.57735 1 8896 8896 20.454 1.0146 1 40911000 10582 10 6780 6784 10766 10766 -0.026113886158100286 EEGAPSAAAL 10 Unmodified _EEGAPSAAAL_ 0 0 0 ENST00000464876.5_1_9:139914760-139916113:-|nuORF;ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ABCA2|p.F605Lfs*4|1|0.21|ENSG00000107331|chr9:137018723-137018723|A/-|frameshift_variant;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;ABCA2|p.G2110Afs*11|1|0.41|ENSG00000107331|chr9:137010217-137010217|C/-|frameshift_variant;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2 ENST00000464876.5_1_9:139914760-139916113:-|nuORF ENST00000464876.5_1_9:139914760-139916113:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23565673828125 2 458.224539 914.434526 0.0031988 1.4658E-06 0.23401 0.00010723 0.23721 0.0001087 458.224614042524 53.741 0.66636 50.653 50.321 50.988 -3.0876 33 18 2 0 0 0 0.050917 5 9909 9853;9901;9909;9953;9960 74.929 24.996 1 4778800 10583 10 6780 6784 10767;10768;10769;10770;10771 10769 -0.026113886158100286 EEGAPSAAAL 10 Unmodified _EEGAPSAAAL_ 0 0 0 ENST00000464876.5_1_9:139914760-139916113:-|nuORF;ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ABCA2|p.F605Lfs*4|1|0.21|ENSG00000107331|chr9:137018723-137018723|A/-|frameshift_variant;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;ABCA2|p.G2110Afs*11|1|0.41|ENSG00000107331|chr9:137010217-137010217|C/-|frameshift_variant;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2 ENST00000464876.5_1_9:139914760-139916113:-|nuORF ENST00000464876.5_1_9:139914760-139916113:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2246398925781 2 458.224539 914.434526 -0.047561 -2.1794E-05 0.29189 0.00013375 0.24433 0.00011196 458.2246427343062 53.813 0.69297 50.718 50.339 51.032 -3.0954 34 19 2 0 0 0 0.017344 2 9982 9917;9982 96.285 54.445 1 3547500 10584 10 6780 6784 10772;10773 10773 -0.026113886158100286 EEGDAEVMQ 9 Unmodified _EEGDAEVMQ_ 0 0 0 ENSG00000171813|ENST00000305233|PWWP2B;nc|ENSG00000171813|Q6NUJ5-2|PWWP2B;PWWP2B|p.P86Lfs*100|1|0.35|ENSG00000171813|chr10:132404751-132404751|C/-|frameshift_variant ENSG00000171813|ENST00000305233|PWWP2B ENSG00000171813|ENST00000305233|PWWP2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.7655334472656 2 504.202947 1006.39134 -0.075158 -3.7895E-05 1.2436 0.00062703 1.1684 0.00058914 504.2049233365394 67.096 1.0807 63.988 63.237 64.318 -3.1086 84 30 4 0 0 0 0.26957 1 12931 12931 4.7159 0 1 5365600 10585 6175 6781 6785 10774 10774 -0.1115994645539331 EEGDRVITY 9 Unmodified _EEGDRVITY_ 0 0 0 nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2614135742188 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 120.88 1 120.88 120.38 121.38 0 0 0 0 0.23508 1 23827 23827 7.9102 0.62092 1 10586 4267 6782 6786 10775 10775 -0.028280455242793323 EEGDVQRTL 9 Unmodified _EEGDVQRTL_ 0 0 0 nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1 nc|ENSG00000108018|Q8WY21-4|SORCS1 nc|ENSG00000108018|Q8WY21-4|SORCS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6964721679688 2 523.759278 1045.504 NaN NaN NaN NaN NaN NaN NaN 130.89 1 126.12 125.62 126.62 -4.7725 0 0 0 0.21848 1 25195 25195 18.135 2.2878 1 10587 2453 6783 6787 10776 10776 -0.01692929667046883 EEGEGLRTA 9 Unmodified _EEGEGLRTA_ 0 0 0 nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR nc|ENSG00000140534|Q7Z2Z1-2|TICRR nc|ENSG00000140534|Q7Z2Z1-2|TICRR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2333984375 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 58.915 1 55.663 55.163 56.163 -3.2517 0 0 0 0.22621 1 10951 10951 15.847 4.2069 1 10588 4309 6784 6788 10777 10777 -0.030568877298605912 EEGERLTK 8 Unmodified _EEGERLTK_ 0 0 0 nc|ENSG00000197847|A6NK97|SLC22A20P nc|ENSG00000197847|A6NK97|SLC22A20P nc|ENSG00000197847|A6NK97|SLC22A20P MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2506408691406 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 34.775 1 32.457 31.957 32.957 -2.3175 0 0 0 0.20618 1 6391 6391 20.454 0.039092 1 10589 12544 6785 6789 10778 10778 0.005799891668402779 EEGGATHVY 9 Unmodified _EEGGATHVY_ 0 0 0 nc|ENSG00000166452|Q9NQ31-3|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1;ENSG00000166452|ENST00000309377|AKIP1 nc|ENSG00000166452|Q9NQ31-3|AKIP1 nc|ENSG00000166452|Q9NQ31-3|AKIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.251953125 2 481.714339 961.414125 0.041475 1.9979E-05 -0.8522 -0.00041052 -0.81072 -0.00039054 481.7138824535348 24.184 0.44207 24.184 23.998 24.44 0 18 12 2 0 0 0 0.36689 1 4143 4143 42.095 22.656 1 1344600 10590 5726 6786 6790 10779 10779 -0.06812559275613239 EEGGATHVY 9 Unmodified _EEGGATHVY_ 0 0 0 nc|ENSG00000166452|Q9NQ31-3|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1;ENSG00000166452|ENST00000309377|AKIP1 nc|ENSG00000166452|Q9NQ31-3|AKIP1 nc|ENSG00000166452|Q9NQ31-3|AKIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2535705566406 2 481.714339 961.414125 0.13223 6.3698E-05 -2.274 -0.0010954 -2.1418 -0.0010317 481.7131975830784 25.649 0.6218 24.014 23.752 24.374 -1.6347 23 17 2 0 0 0 0.36689 1 4207 4207 42.095 23.96 1 703750 10591 5726 6786 6790 10780 10780 -0.06812559275613239 EEGGEGEELG 10 Unmodified _EEGGEGEELG_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 503.7657775878906 2 503.204001 1004.39345 -0.0085855 -4.3203E-06 1.0883 0.00054765 1.0797 0.00054333 503.20454700724696 92.324 0.80138 92.324 91.912 92.714 0 42 22 3 0 0 0 0.050917 1 18045 18045 12.228 0 1 4186000 10592 3392 6787 6791 10781 10781 -0.10857194445929963 EEGGEGEELG 10 Unmodified _EEGGEGEELG_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 503.204001 1004.39345 0.010622 5.3449E-06 0.80791 0.00040654 0.81853 0.00041189 503.20447416132686 96.462 0.89523 92.364 91.91 92.805 -4.0978 -0.046374 -0.00030294 NaN 12.228 52 25 4 NaN NaN NaN NaN 0 NaN NaN 0 2845500 10593 3392 6787 6791 -0.10857194445929963 EEGGEGEELG 10 Unmodified _EEGGEGEELG_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 503.204001 1004.39345 -0.11758 -5.9165E-05 1.2937 0.00065101 1.1762 0.00059185 503.2046046110233 96.701 0.99924 92.466 92.019 93.018 -4.2348 0.055454 0.00018599 NaN 12.228 43 28 2 NaN NaN NaN NaN 0 NaN NaN 0 3549300 10594 3392 6787 6791 -0.10857194445929963 EEGGEGEELG 10 Unmodified _EEGGEGEELG_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 503.204001 1004.39345 -0.15721 -7.9109E-05 1.211 0.00060937 1.0538 0.00053026 503.2046125010716 96.408 0.896 92.488 92.023 92.919 -3.9194 0.077431 0.0001027 NaN 12.228 44 25 2 NaN NaN NaN NaN 0 NaN NaN 0 3399900 10595 3392 6787 6791 -0.10857194445929963 EEGHDDLAGH 10 Unmodified _EEGHDDLAGH_ 0 0 0 REV__ENSG00000105929|ENST00000310018|ATP6V0A4 REV__ENSG00000105929|ENST00000310018|ATP6V0A4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.1858825683594 3 360.484465 1078.43157 0.51237 0.0001847 1.4444 0.0005207 1.9568 0.0007054 360.48488211045293 23.436 1.1937 21.883 20.958 22.151 -1.5532 57 33 3 0 0 0 1.1313 1 4097 4097 0.0013812 0.0013812 1 336510 + 10596 15024 6788 6792 10782 10782 -0.1045126374060601 EEGHEMCCTL 10 Unmodified _EEGHEMCCTL_ 0 0 0 REV__nc|ENSG00000026751|Q9NQ25-5|SLAMF7 REV__nc|ENSG00000026751|Q9NQ25-5|SLAMF7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3353271484375 2 576.211934 1150.40932 NaN NaN NaN NaN NaN NaN NaN 105.37 1 101.11 100.61 101.61 -4.2638 0 0 0 0.22588 1 20736 20736 7.2892 0 1 + 10597 14005 6789 6793 10783 10783 -0.15987270796540543 EEGHHGRP 8 Unmodified _EEGHHGRP_ 0 0 0 REV__ENST00000486455.5_3_3:58183553-58183610:-|nuORF REV__ENST00000486455.5_3_3:58183553-58183610:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2388916015625 2 459.712465 917.410377 -0.1316 -6.05E-05 0.69163 0.00031795 0.56002 0.00025745 459.71267548943337 67.679 1.4858 64.57 63.826 65.312 -3.1086 105 42 4 0 0 0 0.60622 1 13245 13245 21.747 21.747 1 7881700 + 10598 22238 6790 6794 10784 10784 -0.05163184258799447 EEGHHGRP 8 Unmodified _EEGHHGRP_ 0 0 0 REV__ENST00000486455.5_3_3:58183553-58183610:-|nuORF REV__ENST00000486455.5_3_3:58183553-58183610:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 459.712465 917.410377 -0.088084 -4.0493E-05 0.68205 0.00031355 0.59396 0.00027305 459.7127091512266 64.229 1.317 64.229 63.642 64.959 0 -0.28995 0.0002042 NaN 21.747 67 37 2 NaN NaN NaN NaN 0 NaN NaN 0 3352100 + 10599 22238 6790 6794 -0.05163184258799447 EEGHHGRP 8 Unmodified _EEGHHGRP_ 0 0 0 REV__ENST00000486455.5_3_3:58183553-58183610:-|nuORF REV__ENST00000486455.5_3_3:58183553-58183610:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.712465 917.410377 0.26863 0.00012349 0.17741 8.1559E-05 0.44604 0.00020505 459.71254409308324 68.119 1.5801 64.583 63.816 65.396 -3.5362 0.063549 -0.00025978 NaN 21.747 92 44 3 NaN NaN NaN NaN 0 NaN NaN 0 9066100 + 10600 22238 6790 6794 -0.05163184258799447 EEGHHGRP 8 Unmodified _EEGHHGRP_ 0 0 0 REV__ENST00000486455.5_3_3:58183553-58183610:-|nuORF REV__ENST00000486455.5_3_3:58183553-58183610:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.712465 917.410377 0.32287 0.00014843 0.18305 8.415E-05 0.50592 0.00023258 459.7124704974423 68.067 1.5812 64.695 63.821 65.402 -3.3723 0.17565 -0.00025459 NaN 21.747 109 45 4 NaN NaN NaN NaN 0 NaN NaN 0 4793600 + 10601 22238 6790 6794 -0.05163184258799447 EEGHIGVYY 9 Unmodified _EEGHIGVYY_ 0 0 0 ENST00000519872.1_1_8:37594193-37598024:+|nuORF;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2;ENSG00000147475|ENST00000519638|ERLIN2 ENST00000519872.1_1_8:37594193-37598024:+|nuORF ENST00000519872.1_1_8:37594193-37598024:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.278076171875 2 533.745639 1065.47673 NaN NaN NaN NaN NaN NaN NaN 65.291 1 62.244 61.744 62.744 -3.047 0 0 0 0.20155 1 12635 12635 23.148 0 1 10602 4704 6791 6795 10785 10785 -0.053394132074117806 EEGHPFKA 8 Unmodified _EEGHPFKA_ 0 0 0 nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-4|RTN3;nc|ENSG00000133318|O95197-5|RTN3 nc|ENSG00000133318|O95197-7|RTN3 nc|ENSG00000133318|O95197-7|RTN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2236328125 2 457.721967 913.429381 0.52632 0.00024091 -0.037694 -1.7253E-05 0.48863 0.00022366 457.72181112597605 22.341 0.27337 20.867 20.73 21.003 -1.4742 10 7 2 0 0 0 0.12259 1 3819 3819 58.679 40.544 1 277900 10603 3797 6792 6796 10786 10786 -0.03079647687764009 EEGHPFKA 8 Unmodified _EEGHPFKA_ 0 0 0 nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-4|RTN3;nc|ENSG00000133318|O95197-5|RTN3 nc|ENSG00000133318|O95197-7|RTN3 nc|ENSG00000133318|O95197-7|RTN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.223876953125 2 457.721967 913.429381 -0.17988 -8.2335E-05 0.60198 0.00027554 0.4221 0.0001932 457.72220670546363 22.246 0.28308 20.792 20.661 20.944 -1.4535 11 7 2 0 0 0 0.14223 1 3542 3542 54.774 43.133 1 226630 10604 3797 6792 6796 10787 10787 -0.03079647687764009 EEGLEIATV 9 Unmodified _EEGLEIATV_ 0 0 0 REV__ENST00000573957.1_1_17:7497970-7499300:-|nuORF REV__ENST00000573957.1_1_17:7497970-7499300:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2532043457031 2 480.747847 959.481142 -0.022204 -1.0674E-05 0.2012 9.6725E-05 0.17899 8.6051E-05 480.7478614165463 120.04 1.4116 120.04 119.48 120.89 0 117 39 4 0 0 0 0.16442 1 23820 23820 42.095 7.9921 1 85963000 + 10605 15954 6793 6797 10788 10788 -0.00021948784512915154 EEGLESGLDF 10 Unmodified _EEGLESGLDF_ 0 0 0 ENSG00000260220|ENST00000638797|CCDC187 ENSG00000260220|ENST00000638797|CCDC187 ENSG00000260220|ENST00000638797|CCDC187 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7919921875 2 548.245669 1094.47678 -0.049535 -2.7157E-05 -3.0406 -0.001667 -3.0901 -0.0016942 548.7443696003281 107.89 0.48473 103.47 103.27 103.75 -4.4121 24 13 3 0 0 0 0.83242 1 20717 20717 20.454 0 1 1310600 10606 7953 6794 6798 10789 10789 -0.0666745799810542 EEGLKALY 8 Unmodified _EEGLKALY_ 0 0 0 nc|ENSG00000174032|Q5SVS4-2|SLC25A30;ENSG00000174032|ENST00000519676|SLC25A30 nc|ENSG00000174032|Q5SVS4-2|SLC25A30 nc|ENSG00000174032|Q5SVS4-2|SLC25A30 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.52655029296875 2 461.74765 921.480748 -0.16912 -7.8092E-05 0.47177 0.00021784 0.30265 0.00013975 461.7478143759679 88.989 0.66904 85.196 84.804 85.473 -3.7926 51 18 4 0 0 0 0.44459 1 17455 17455 39.957 0 1 5840200 10607 6325 6795 6799 10790 10790 0.016866762862719042 EEGLKALY 8 Unmodified _EEGLKALY_ 0 0 0 nc|ENSG00000174032|Q5SVS4-2|SLC25A30;ENSG00000174032|ENST00000519676|SLC25A30 nc|ENSG00000174032|Q5SVS4-2|SLC25A30 nc|ENSG00000174032|Q5SVS4-2|SLC25A30 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.74765 921.480748 0.2253 0.00010403 0.12115 5.5942E-05 0.34645 0.00015997 461.7476257150408 85.256 0.77057 85.256 84.769 85.539 0 0.053861 -6.4902E-05 NaN 39.957 47 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5303800 10608 6325 6795 6799 0.016866762862719042 EEGLKALY 8 Unmodified _EEGLKALY_ 0 0 0 nc|ENSG00000174032|Q5SVS4-2|SLC25A30;ENSG00000174032|ENST00000519676|SLC25A30 nc|ENSG00000174032|Q5SVS4-2|SLC25A30 nc|ENSG00000174032|Q5SVS4-2|SLC25A30 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.74765 921.480748 0.35336 0.00016316 -0.15163 -7.0013E-05 0.20173 9.315E-05 461.74754648690254 89.221 0.6627 85.177 84.754 85.417 -4.0443 -0.024897 -0.00031681 NaN 39.957 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4509900 10609 6325 6795 6799 0.016866762862719042 EEGLKALY 8 Unmodified _EEGLKALY_ 0 0 0 nc|ENSG00000174032|Q5SVS4-2|SLC25A30;ENSG00000174032|ENST00000519676|SLC25A30 nc|ENSG00000174032|Q5SVS4-2|SLC25A30 nc|ENSG00000174032|Q5SVS4-2|SLC25A30 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.74765 921.480748 0.20871 9.6373E-05 0.28889 0.00013339 0.4976 0.00022977 461.74767518893714 88.929 0.80325 85.179 84.639 85.442 -3.7501 -0.02305 9.0002E-05 NaN 39.957 60 22 4 NaN NaN NaN NaN 0 NaN NaN 0 5211400 10610 6325 6795 6799 0.016866762862719042 EEGLSHLTA 9 Unmodified _EEGLSHLTA_ 0 0 0 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7376403808594 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 59.44 1 56.53 56.03 57.03 -2.9105 0 0 0 0.00054756 1 11428 11428 81.613 26.84 1 10611 1494 6796 6800 10791 10791 -0.01843699724486214 EEGLSHLTA 9 Unmodified _EEGLSHLTA_ 0 0 0 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7382507324219 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 59.658 1 56.345 55.845 56.845 -3.3139 0 0 0 0.19512 1 11096 11096 14.957 13.55 1 10612 1494 6796 6800 10792 10792 -0.01843699724486214 EEGLSHLTA 9 Unmodified _EEGLSHLTA_ 0 0 0 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73760986328125 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 59.886 1 56.572 56.072 57.072 -3.3139 0 0 0 0.10963 1 11146 11146 37.075 26.176 1 10613 1494 6796 6800 10793 10793 -0.01843699724486214 EEGLSHLTA 9 Unmodified _EEGLSHLTA_ 0 0 0 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73760986328125 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 59.9 1 56.586 56.086 57.086 -3.3139 0 0 0 1.0404E-17 1 11148 11148 120.45 52.37 1 10614 1494 6796 6800 10794 10794 -0.01843699724486214 EEGLSHLTA 9 Unmodified _EEGLSHLTA_ 0 0 0 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73773193359375 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 60.105 1 56.791 56.291 57.291 -3.3139 0 0 0 6.3502E-08 1 11188 11188 100.37 32.291 1 10615 1494 6796 6800 10795 10795 -0.01843699724486214 EEGLSHLTA 9 Unmodified _EEGLSHLTA_ 0 0 0 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73779296875 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 59.961 1 56.738 56.238 57.238 -3.2237 0 0 0 6.3502E-08 1 11209 11209 100.37 45.598 1 10616 1494 6796 6800 10796 10796 -0.01843699724486214 EEGNVKML 8 Unmodified _EEGNVKML_ 0 0 0 nc|ENSG00000089472|Q9BQS7-4|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH nc|ENSG00000089472|Q9BQS7-4|HEPH nc|ENSG00000089472|Q9BQS7-4|HEPH MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23291015625 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 117.57 1 113.07 112.57 113.57 -4.502 0 0 0 0.20568 1 23177 23177 20.871 1.4322 1 10617 1762 6797 6801 10797 10797 -0.014418541082250158 EEGPAHIY 8 Unmodified _EEGPAHIY_ 0 0 0 ENST00000432648.7_1_1:39466650-39466707:+|nuORF ENST00000432648.7_1_1:39466650-39466707:+|nuORF ENST00000432648.7_1_1:39466650-39466707:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2259521484375 2 458.213975 914.413397 NaN NaN NaN NaN NaN NaN NaN 52.721 1 49.625 49.125 50.125 -3.0954 0 0 0 0.19492 1 9737 9737 26.341 9.399 1 10618 9799 6798 6802 10798 10798 -0.04723353924680396 EEGPAHIY 8 Unmodified _EEGPAHIY_ 0 0 0 ENST00000432648.7_1_1:39466650-39466707:+|nuORF ENST00000432648.7_1_1:39466650-39466707:+|nuORF ENST00000432648.7_1_1:39466650-39466707:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23828125 2 458.213975 914.413397 NaN NaN NaN NaN NaN NaN NaN 52.818 1 49.723 49.223 50.223 -3.0954 0 0 0 0.17294 1 9757 9757 34.187 2.0704 1 10619 9799 6798 6802 10799 10799 -0.04723353924680396 EEGPAWPPP 9 Unmodified _EEGPAWPPP_ 0 0 0 ENST00000447956.5_1_20:2187910-2193574:+|nuORF;ENST00000411839.1_1_20:2187910-2193563:+|nuORF ENST00000447956.5_1_20:2187910-2193574:+|nuORF ENST00000447956.5_1_20:2187910-2193574:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25518798828125 2 490.229625 978.444697 0.069175 3.3912E-05 0.20299 9.9511E-05 0.27216 0.00013342 490.22817159082206 66.046 0.17417 62.762 62.65 62.824 -3.2832 7 4 2 0 0 0 0.77732 1 12426 12426 12.532 3.1484 1 698430 10620 9580 6799 6803 10800 10800 -0.0453878089057298 EEGPPPPSP 9 Unmodified _EEGPPPPSP_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.D465Efs*32|1|0.12|ENSG00000113810|chr3:160416372-160416373|-/GCATACATCTT|frameshift_variant;SMC4|p.K628Nfs*23|1|0.11|ENSG00000113810|chr3:160420762-160420762|A/-|frameshift_variant nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7513122558594 2 453.713808 905.413062 0.25944 0.00011771 0.060072 2.7256E-05 0.31951 0.00014497 453.71377763673866 32.771 2.2994 32.771 31.945 34.244 0 116 65 3 0 0 0 0.19271 1 6124 6124 30.637 0 1 3250500 10621 2764 6800 6804 10801 10801 -0.04342773644521003 EEGPPPPSP 9 Unmodified _EEGPPPPSP_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.D465Efs*32|1|0.12|ENSG00000113810|chr3:160416372-160416373|-/GCATACATCTT|frameshift_variant;SMC4|p.K628Nfs*23|1|0.11|ENSG00000113810|chr3:160420762-160420762|A/-|frameshift_variant nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7595520019531 2 453.713808 905.413062 -0.39843 -0.00018077 0.5276 0.00023938 0.12917 5.8606E-05 453.7139721921061 35.304 1.9721 32.91 32.007 33.979 -2.3938 115 55 3 0 0 0 0.19983 1 6458 6458 24.882 20.166 1 2395900 10622 2764 6800 6804 10802 10802 -0.04342773644521003 EEGPPPPSP 9 Unmodified _EEGPPPPSP_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.D465Efs*32|1|0.12|ENSG00000113810|chr3:160416372-160416373|-/GCATACATCTT|frameshift_variant;SMC4|p.K628Nfs*23|1|0.11|ENSG00000113810|chr3:160420762-160420762|A/-|frameshift_variant nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75018310546875 2 453.713808 905.413062 0.10974 4.979E-05 0.15227 6.9086E-05 0.26201 0.00011888 453.71380046635363 35.276 1.8103 33.023 32.218 34.028 -2.2527 109 51 3 0 0 0 1.4195E-07 2 6174 6174;6261 147.83 30.232 1 2091000 10623 2764 6800 6804 10803;10804 10803 -0.04342773644521003 EEGPPTRGA 9 Unmodified _EEGPPTRGA_ 0 0 0 ENSG00000213999|ENST00000424583|MEF2B;MEF2B|p.T274Pfs*130|1|0.54|ENSG00000213999|chr19:19146335-19146335|G/-|frameshift_variant;ENST00000409224.5_1_19:19256608-19257444:-|nuORF ENSG00000213999|ENST00000424583|MEF2B ENSG00000213999|ENST00000424583|MEF2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22552490234375 2 457.222331 912.430109 0.17856 8.1641E-05 0.094807 4.3348E-05 0.27336 0.00012499 457.2223325521085 15.95 0.69508 15.95 15.607 16.302 0 50 19 4 0 0 0 0.23715 3 2471 2428;2471;2474 30.703 19.804 1 4588100 10624 7715 6801 6805 10805;10806;10807 10806 -0.0296085303871223 EEGPPTRGA 9 Unmodified _EEGPPTRGA_ 0 0 0 ENSG00000213999|ENST00000424583|MEF2B;MEF2B|p.T274Pfs*130|1|0.54|ENSG00000213999|chr19:19146335-19146335|G/-|frameshift_variant;ENST00000409224.5_1_19:19256608-19257444:-|nuORF ENSG00000213999|ENST00000424583|MEF2B ENSG00000213999|ENST00000424583|MEF2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22509765625 2 457.222331 912.430109 -0.39757 -0.00018178 0.75912 0.00034709 0.36156 0.00016531 457.2226833148231 17.057 0.66747 15.841 15.423 16.09 -1.2159 49 18 4 0 0 0 0.25976 1 2715 2715 30.703 18.463 1 4265300 10625 7715 6801 6805 10808 10808 -0.0296085303871223 EEGPWVNGLSR 11 Unmodified _EEGPWVNGLSR_ 0 0 0 REV__ENSG00000178409|ENST00000369042|BEND3 REV__ENSG00000178409|ENST00000369042|BEND3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7552490234375 2 622.306926 1242.5993 0.40255 0.00025051 -2.669 -0.0016609 -2.2664 -0.0014104 622.8080377075532 145.73 0.18085 145.73 145.65 145.84 0 5 4 2 0 0 0 0.96034 1 29148 29148 5.7834 1.839 1 3442300 + 10626 13193 6802 6806 10809 10809 -0.012295764760210659 EEGQELKF 8 Unmodified _EEGQELKF_ 0 0 0 REV__ENSG00000198040|ENST00000539354|ZNF84 REV__ENSG00000198040|ENST00000539354|ZNF84 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2742004394531 2 490.24019 978.465826 -0.016404 -8.042E-06 0.1858 9.1085E-05 0.16939 8.3043E-05 490.2402188760907 103.64 0.98169 99.426 98.875 99.857 -4.2183 63 28 3 0 0 0 0.71876 1 20453 20453 11.64 0 1 6595700 + 10627 19385 6803 6807 10810 10810 -0.024268155817139814 EEGQYHRY 8 Unmodified _EEGQYHRY_ 0 0 0 REV__ENSG00000188342|ENST00000340473|GTF2F2 REV__ENSG00000188342|ENST00000340473|GTF2F2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.261962890625 2 541.238513 1080.46247 NaN NaN NaN NaN NaN NaN NaN 44.468 1 41.677 41.177 42.177 -2.79 0 0 0 0.21486 1 8356 8356 10.183 0.10947 1 + 10628 19142 6804 6808 10811 10811 -0.07454065635715779 EEGSYGWRNF 10 Unmodified _EEGSYGWRNF_ 0 0 0 ENSG00000173930|ENST00000310954|SLCO4C1 ENSG00000173930|ENST00000310954|SLCO4C1 ENSG00000173930|ENST00000310954|SLCO4C1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.76806640625 2 622.770177 1243.5258 NaN NaN NaN NaN NaN NaN NaN 47.003 1 44.162 43.662 44.662 -2.8409 0 0 0 2.8426 1 8871 8871 0.063865 0 1 10629 6318 6805 6809 10812 10812 -0.08622124918474583 EEGTVENNYSC 11 Unmodified _EEGTVENNYSC_ 0 0 0 REV__ENSG00000108021|ENST00000695737|TASOR2 REV__ENSG00000108021|ENST00000695737|TASOR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7800903320312 2 622.740425 1243.4663 NaN NaN NaN NaN NaN NaN NaN 157.77 1 152.98 152.48 153.48 -4.7885 0 0 0 0.23324 1 31377 31377 5.7319 0.97584 1 + 10630 15106 6806 6810 10813 10813 -0.14569808714804822 EEGVDDMASL 10 Unmodified _EEGVDDMASL_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-2|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.28173828125 2 533.223879 1064.43321 NaN NaN NaN NaN NaN NaN NaN 116.72 1 116.72 116.22 117.22 0 0 0 0 0.22535 1 22985 22985 20.454 2.3186 1 10631 4610 6807 6811 10814 10814 -0.09643390766882476 EEGYGDMR 8 Unmodified _EEGYGDMR_ 0 0 0 REV__PTPN21|p.I849Lfs*9|1|0.43|ENSG00000070778|chr14:88473769-88473769|T/-|frameshift_variant REV__PTPN21|p.I849Lfs*9|1|0.43|ENSG00000070778|chr14:88473769-88473769|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7227783203125 2 478.692549 955.370546 NaN NaN NaN NaN NaN NaN NaN 38.006 1 35.538 35.038 36.038 -2.4688 0 0 0 0.21486 1 7032 7032 12.532 3.1841 1 + 10632 14266 6808 6812 10815 10815 -0.1089249204439966 EEGYMTPM 8 Unmodified _EEGYMTPM_ 0 0 0 ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4 ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7216796875 2 479.188254 956.361955 NaN NaN NaN NaN NaN NaN NaN 112.04 1 107.52 107.02 108.02 -4.5259 0 0 0 0.21486 1 21506 21506 5.7604 0 1 10633 11780 6809 6813 10816 10816 -0.11797182005238938 EEGYWQIAA 9 Unmodified _EEGYWQIAA_ 0 0 0 ENSG00000174989|ENST00000652555|FBXW8;nc|ENSG00000174989|Q8N3Y1-2|FBXW8 ENSG00000174989|ENST00000652555|FBXW8 ENSG00000174989|ENST00000652555|FBXW8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.262451171875 2 533.745639 1065.47673 0.063115 3.3687E-05 0.1176 6.2771E-05 0.18072 9.6458E-05 533.7456409425105 131.64 0.63298 127 126.71 127.34 -4.6399 30 17 2 0 0 0 0.12295 1 25918 25918 54.774 37.831 1 2787800 10634 6379 6810 6814 10817 10817 -0.05339413207434518 EEGYWQIAA 9 Unmodified _EEGYWQIAA_ 0 0 0 ENSG00000174989|ENST00000652555|FBXW8;nc|ENSG00000174989|Q8N3Y1-2|FBXW8 ENSG00000174989|ENST00000652555|FBXW8 ENSG00000174989|ENST00000652555|FBXW8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.263427734375 2 533.745639 1065.47673 0.39258 0.00020954 -0.12512 -6.6781E-05 0.26747 0.00014276 533.745514768343 131.88 0.6828 127.02 126.56 127.25 -4.8527 29 19 2 0 0 0 0.13686 1 25307 25307 61.357 44.415 1 2366200 10635 6379 6810 6814 10818 10818 -0.05339413207434518 EEGYWQIAA 9 Unmodified _EEGYWQIAA_ 0 0 0 ENSG00000174989|ENST00000652555|FBXW8;nc|ENSG00000174989|Q8N3Y1-2|FBXW8 ENSG00000174989|ENST00000652555|FBXW8 ENSG00000174989|ENST00000652555|FBXW8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2787475585938 2 533.745639 1065.47673 0.24118 0.00012873 0.26114 0.00013938 0.50232 0.00026811 533.7457296413307 131.65 0.50748 126.85 126.57 127.08 -4.799 21 13 2 0 0 0 0.42289 1 25363 25363 39.957 23.015 1 3103600 10636 6379 6810 6814 10819 10819 -0.05339413207434518 EEHDQASPSGF 11 Unmodified _EEHDQASPSGF_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;ZMAT1|p.I482Tfs*17|1|0.04|ENSG00000166432|chrX:101883979-101883982|CTAA/-|frameshift_variant;ZMAT1|p.Y484Tfs*16|1|0.04|ENSG00000166432|chrX:101883977-101883977|A/-|frameshift_variant;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.295166015625 2 602.249274 1202.484 NaN NaN NaN NaN NaN NaN NaN 51.981 1 48.936 48.436 49.436 -3.0453 0 0 0 0.22862 1 9553 9553 9.3831 0.63772 1 10637 5720 6811 6815 10820 10820 -0.10914725397674374 EEHEVAVLG 9 Unmodified _EEHEVAVLG_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 491.73748779296875 2 491.745639 981.476725 -0.09499 -4.6711E-05 0.25464 0.00012522 0.15965 7.8505E-05 491.74568132705946 59.696 0.77281 56.473 56.116 56.889 -3.2237 52 21 3 0 0 0 0.15889 1 11214 11214 24.882 23.667 1 4748600 10638 4405 6812 6816 10821 10821 -0.014754132074244808 EEHEVAVLG 9 Unmodified _EEHEVAVLG_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 491.745639 981.476725 -0.009943 -4.8894E-06 0.39371 0.00019361 0.38377 0.00018872 491.7457282571058 56.796 0.73757 56.796 56.427 57.165 0 0.22507 0.00021453 NaN 24.882 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3762600 10639 4405 6812 6816 -0.014754132074244808 EEHEVAVLG 9 Unmodified _EEHEVAVLG_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 491.745639 981.476725 0.052509 2.5821E-05 0.13561 6.6688E-05 0.18812 9.2509E-05 491.74559646192444 59.431 0.66437 56.521 56.179 56.843 -2.9105 -0.050356 -3.9309E-05 NaN 24.882 51 18 4 NaN NaN NaN NaN 0 NaN NaN 0 8265300 10640 4405 6812 6816 -0.014754132074244808 EEHEVAVLG 9 Unmodified _EEHEVAVLG_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 491.745639 981.476725 0.13908 6.8392E-05 0.015481 7.6125E-06 0.15456 7.6004E-05 491.74556588433245 59.808 0.80684 56.494 56.1 56.907 -3.3139 -0.076479 -0.00015746 NaN 24.882 50 22 3 NaN NaN NaN NaN 0 NaN NaN 0 4525100 10641 4405 6812 6816 -0.014754132074244808 EEHGGLIRS 9 Unmodified _EEHGGLIRS_ 0 0 0 ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2;U2AF2|p.L178Afs*15|1|0.42|ENSG00000063244|chr19:55662539-55662540|-/G|frameshift_variant ENSG00000063244|ENST00000308924|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.4779968261719 3 333.173562 996.498858 0.70076 0.00023348 -1.0401 -0.00034652 -0.3393 -0.00011305 333.17324333001227 24.398 0.41623 22.75 22.543 22.959 -1.6482 25 11 3 0 0 0 0.069179 1 4241 4241 51.415 37.8 1 938790 10642 1327 6813 6817 10822 10822 0.0004681126100649635 EEHGGLIRS 9 Unmodified _EEHGGLIRS_ 0 0 0 ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2;U2AF2|p.L178Afs*15|1|0.42|ENSG00000063244|chr19:55662539-55662540|-/G|frameshift_variant ENSG00000063244|ENST00000308924|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 333.173562 996.498858 0.0086524 2.8827E-06 -0.14322 -4.7718E-05 -0.13457 -4.4835E-05 333.17351124673365 24.281 0.34587 22.747 22.609 22.955 -1.5342 -0.0016353 0.00034533 NaN 51.415 26 9 4 NaN NaN NaN NaN 0 NaN NaN 0 998990 10643 1327 6813 6817 0.0004681126100649635 EEHGYTGSY 9 Unmodified _EEHGYTGSY_ 0 0 0 ENSG00000111783|ENST00000392842|RFX4;nc|ENSG00000111783|Q33E94-2|RFX4;nc|ENSG00000111783|Q33E94-3|RFX4 ENSG00000111783|ENST00000392842|RFX4 ENSG00000111783|ENST00000392842|RFX4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2710571289062 2 521.709254 1041.40395 0.31414 0.00016389 -4.1718 -0.0021765 -3.8576 -0.0020126 522.2086759454522 123.97 0.72697 119.38 118.86 119.58 -4.5926 28 20 2 0 0 0 0.72864 1 23851 23851 16.942 5.302 1 2090400 10644 2646 6814 6818 10823 10823 -0.1150916700084963 EEHHLRYRHHR 11 Unmodified _EEHHLRYRHHR_ 0 0 0 REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3955078125 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 123.89 1 123.89 123.39 124.39 0 0 0 0 0.23379 1 24421 24421 5.2969 3.815 1 + 10645 20387 6815 6819 10824 10824 0.020484154291352752 EEHHLRYRHHR 11 Unmodified _EEHHLRYRHHR_ 0 0 0 REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.37890625 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 128.48 1 123.85 123.35 124.35 -4.6292 0 0 0 0.23698 1 25328 25328 1.3295 0.13619 1 + 10646 20387 6815 6819 10825 10825 0.020484154291352752 EEHHLRYRHHR 11 Unmodified _EEHHLRYRHHR_ 0 0 0 REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3916015625 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 147.4 1 142.71 142.21 143.21 -4.6982 0 0 0 0.23698 1 29246 29246 1.3295 0 1 + 10647 20387 6815 6819 10826 10826 0.020484154291352752 EEHHLRYRHHR 11 Unmodified _EEHHLRYRHHR_ 0 0 0 REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.39501953125 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 126.83 1 122.03 121.53 122.53 -4.7958 0 0 0 0.23698 1 24342 24342 1.3295 0.13619 1 + 10648 20387 6815 6819 10827 10827 0.020484154291352752 EEHHLRYRHHR 11 Unmodified _EEHHLRYRHHR_ 0 0 0 REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3985595703125 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 157.83 1 152.54 152.04 153.04 -5.2854 0 0 0 0.23698 1 30633 30633 1.1933 0 1 + 10649 20387 6815 6819 10828 10828 0.020484154291352752 EEHHLRYRHHR 11 Unmodified _EEHHLRYRHHR_ 0 0 0 REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3779296875 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 173.46 1 168.57 168.07 169.07 -4.8977 0 0 0 0.23698 1 34444 34444 1.3295 0 1 + 10650 20387 6815 6819 10829 10829 0.020484154291352752 EEHHLRYRHHR 11 Unmodified _EEHHLRYRHHR_ 0 0 0 REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3977661132812 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 121.49 1 116.96 116.46 117.46 -4.5305 0 0 0 0.23379 1 23390 23390 5.2969 2.3016 1 + 10651 20387 6815 6819 10830 10830 0.020484154291352752 EEHHLRYRHHR 11 Unmodified _EEHHLRYRHHR_ 0 0 0 REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3950805664062 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 123.46 1 118.87 118.37 119.37 -4.5926 0 0 0 0.23698 1 23768 23768 1.3295 0.13619 1 + 10652 20387 6815 6819 10831 10831 0.020484154291352752 EEHHLRYRHHR 11 Unmodified _EEHHLRYRHHR_ 0 0 0 REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3948974609375 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 123.86 1 119.26 118.76 119.76 -4.5926 0 0 0 0.23698 1 23836 23836 1.3295 0.13619 1 + 10653 20387 6815 6819 10832 10832 0.020484154291352752 EEHHLRYRHHR 11 Unmodified _EEHHLRYRHHR_ 0 0 0 REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3991088867188 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 126.03 1 121.38 120.88 121.88 -4.6495 0 0 0 0.23698 1 24248 24248 1.1933 0.84271 1 + 10654 20387 6815 6819 10833 10833 0.020484154291352752 EEHHLRYRHHR 11 Unmodified _EEHHLRYRHHR_ 0 0 0 REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.39892578125 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 129.22 1 124.47 123.97 124.97 -4.7408 0 0 0 0.23698 1 24866 24866 1.3295 0.13619 1 + 10655 20387 6815 6819 10834 10834 0.020484154291352752 EEHHLRYRHHR 11 Unmodified _EEHHLRYRHHR_ 0 0 0 REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF REV__ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3948364257812 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 130.23 1 125.46 124.96 125.96 -4.7725 0 0 0 0.23698 1 25060 25060 1.3295 0.13619 1 + 10656 20387 6815 6819 10835 10835 0.020484154291352752 EEHKREYKRWH 11 Unmodified _EEHKREYKRWH_ 0 0 0 REV__nc|ENSG00000212789|Q8NFI4|ST13P5 REV__nc|ENSG00000212789|Q8NFI4|ST13P5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2708129882812 3 533.270929 1596.79096 NaN NaN NaN NaN NaN NaN NaN 44.699 1 44.699 44.199 45.199 0 0 0 0 0.22632 1 8392 8392 0.094841 0 1 + 10657 24262 6816 6820 10836 10836 0.016433442749757887 EEHKREYKRWH 11 Unmodified _EEHKREYKRWH_ 0 0 0 REV__nc|ENSG00000212789|Q8NFI4|ST13P5 REV__nc|ENSG00000212789|Q8NFI4|ST13P5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27099609375 3 533.270929 1596.79096 NaN NaN NaN NaN NaN NaN NaN 83.119 1 79.511 79.011 80.011 -3.6079 0 0 0 0.22632 1 16246 16246 0.172 0 1 + 10658 24262 6816 6820 10837 10837 0.016433442749757887 EEHLENIP 8 Unmodified _EEHLENIP_ 0 0 0 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.268798828125 2 490.737814 979.461075 0.12559 6.1632E-05 -0.15795 -7.7511E-05 -0.032357 -1.5879E-05 490.73790023836204 78.804 0.56683 75.341 74.929 75.496 -3.4633 24 15 2 0 0 0 0.97966 1 15327 15327 16.942 11.712 1 1601700 10659 3355 6817 6821 10838 10838 -0.02947699724472841 EEHLRNRQ 8 Unmodified _EEHLRNRQ_ 0 0 0 ENST00000511015.1_1_5:462030-464560:+|nuORF;ENSG00000180104|ENST00000512944|EXOC3 ENST00000511015.1_1_5:462030-464560:+|nuORF ENST00000511015.1_1_5:462030-464560:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.276123046875 2 541.278503 1080.54245 NaN NaN NaN NaN NaN NaN NaN 39.234 1 36.792 36.292 37.292 -2.4419 0 0 0 0.21486 1 7003 7003 9.3474 2.0582 1 10660 6657 6818 6822 10839 10839 0.005404207581250375 EEHMIVLHS 9 Unmodified _EEHMIVLHS_ 0 0 0 REV__ENST00000478896.2_1_10:75757878-75863603:+|nuORF REV__ENST00000478896.2_1_10:75757878-75863603:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7714233398438 2 547.768591 1093.52263 0.44897 0.00024593 -0.038284 -2.0971E-05 0.41069 0.00022496 547.7674962595938 100.96 0.13834 96.974 96.892 97.031 -3.9895 5 3 2 0 0 0 0.72864 1 19390 19390 23.148 14.403 1 1018400 + 10661 14026 6819 6823 10840 10840 -0.020390912968423436 EEHMQLGI 8 Unmodified _EEHMQLGI_ 0 0 0 REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7298278808594 2 478.728935 955.443317 0.26111 0.000125 0.34109 0.00016329 0.60219 0.00028829 478.7291252485463 92.534 0.6257 88.439 88.155 88.78 -4.0946 28 17 2 0 0 0 0.60622 1 17685 17685 21.747 1.293 1 1633800 + 10662 19228 6820 6824 10841 10841 -0.03618738250975184 EEHPAYLA 8 Unmodified _EEHPAYLA_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2411804199219 2 465.2218 928.429047 -0.13602 -6.328E-05 0.31523 0.00014665 0.17921 8.3374E-05 465.221958236726 48.007 0.64412 45.138 44.809 45.453 -2.869 43 17 3 0 0 0 0.13334 2 9085 9085;9117 56.541 31.867 1 3212000 10663 7503 6821 6825 10842;10843 10842 -0.03803067407636718 EEHPAYLA 8 Unmodified _EEHPAYLA_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2561950683594 2 465.2218 928.429047 -0.08518 -3.9628E-05 0.10249 4.7683E-05 0.017315 8.0553E-06 465.22190145234805 48.072 0.73106 45.122 44.776 45.507 -2.9499 51 20 4 0 0 0 0.18731 1 8774 8774 46.921 16.696 1 3747900 10664 7503 6821 6825 10844 10844 -0.03803067407636718 EEHPKHLVV 9 Unmodified _EEHPKHLVV_ 0 0 0 ENST00000460321.5_1_3:118935188-118955715:-|nuORF;ENSG00000121578|ENST00000393765|B4GALT4 ENST00000460321.5_1_3:118935188-118955715:-|nuORF ENST00000460321.5_1_3:118935188-118955715:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7730102539062 2 544.298373 1086.58219 0.39002 0.00021228 -0.46883 -0.00025519 -0.078819 -4.2901E-05 544.2981684721557 27.165 0.37742 27.165 26.974 27.351 0 18 10 2 0 0 0 0.80521 1 4776 4776 10.824 7.2274 1 1028600 10665 3183 6822 6826 10845 10845 0.04236547708865146 EEHPKHLVV 9 Unmodified _EEHPKHLVV_ 0 0 0 ENST00000460321.5_1_3:118935188-118955715:-|nuORF;ENSG00000121578|ENST00000393765|B4GALT4 ENST00000460321.5_1_3:118935188-118955715:-|nuORF ENST00000460321.5_1_3:118935188-118955715:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7722778320312 2 544.298373 1086.58219 0.31054 0.00016902 -0.26794 -0.00014584 0.042592 2.3183E-05 544.2981660379197 28.683 0.52383 26.928 26.665 27.189 -1.7552 19 14 2 0 0 0 0.69192 1 4826 4826 26.884 15.243 1 621780 10666 3183 6822 6826 10846 10846 0.04236547708865146 EEHQAILNSY 10 Unmodified _EEHQAILNSY_ 0 0 0 REV__STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant REV__STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.287841796875 2 602.28566 1202.55677 NaN NaN NaN NaN NaN NaN NaN 91.336 1 91.336 90.836 91.836 0 0 0 0 0.22569 1 17846 17846 15.847 1.9411 1 + 10667 15276 6823 6827 10847 10847 -0.03640971604227161 EEHRIIMQH 9 Unmodified _EEHRIIMQH_ 0 0 0 REV__ENSG00000018869|ENST00000586929|ZNF582 REV__ENSG00000018869|ENST00000586929|ZNF582 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 597.1529541015625 2 596.798214 1191.58188 NaN NaN NaN NaN NaN NaN NaN 21.638 1 20.163 19.663 20.663 -1.4742 0 0 0 0.23508 1 3668 3668 4.3292 0 1 + 10668 13973 6824 6828 10848 10848 -0.006251952826460183 EEHSTWCCV 9 Unmodified _EEHSTWCCV_ 0 0 0 REV__ENST00000412898.5_3_22:25006393-25007149:+|nuORF REV__ENST00000412898.5_3_22:25006393-25007149:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7869262695312 2 547.207509 1092.40047 1.0841 0.00059324 -0.3508 -0.00019196 0.73332 0.00040128 547.2073316542991 27.718 0.34262 25.936 25.775 26.118 -1.7821 14 9 2 0 0 0 0.72864 1 4923 4923 23.148 2.2772 1 785930 + 10669 21438 6825 6829 10849 10849 -0.14203876370720536 EEIAETLAS 9 Unmodified _EEIAETLAS_ 0 0 0 nc|ENSG00000122188|Q8IWV1-2|LAX1;nc|ENSG00000122188|Q8IWV1-3|LAX1;ENSG00000122188|ENST00000442561|LAX1 nc|ENSG00000122188|Q8IWV1-2|LAX1 nc|ENSG00000122188|Q8IWV1-2|LAX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2358703613281 2 481.73748 961.460406 -0.052895 -2.5481E-05 0.13368 6.4397E-05 0.080781 3.8915E-05 481.73757918359536 72.275 1.0071 72.275 71.742 72.749 0 83 28 4 0 0 0 0.027812 1 13996 13996 92.822 11.209 1 51313000 10670 3213 6826 6830 10850 10850 -0.02186539164176793 EEIAETLAS 9 Unmodified _EEIAETLAS_ 0 0 0 nc|ENSG00000122188|Q8IWV1-2|LAX1;nc|ENSG00000122188|Q8IWV1-3|LAX1;ENSG00000122188|ENST00000442561|LAX1 nc|ENSG00000122188|Q8IWV1-2|LAX1 nc|ENSG00000122188|Q8IWV1-2|LAX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2454833984375 2 481.73748 961.460406 0.13757 6.6274E-05 -0.070056 -3.3748E-05 0.067517 3.2525E-05 481.7374279722488 76.052 1.1618 72.33 71.862 73.024 -3.7227 96 33 4 0 0 0 0.28156 1 14326 14326 25.399 0 1 52261000 10671 3213 6826 6830 10851 10851 -0.02186539164176793 EEIAETLAS 9 Unmodified _EEIAETLAS_ 0 0 0 nc|ENSG00000122188|Q8IWV1-2|LAX1;nc|ENSG00000122188|Q8IWV1-3|LAX1;ENSG00000122188|ENST00000442561|LAX1 nc|ENSG00000122188|Q8IWV1-2|LAX1 nc|ENSG00000122188|Q8IWV1-2|LAX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7763366699219 2 481.73748 961.460406 0.13447 6.4778E-05 -0.048382 -2.3307E-05 0.086086 4.1471E-05 481.7374254064885 75.934 1.2083 72.3 71.856 73.064 -3.6337 99 34 4 0 0 0 0.027812 1 14477 14477 104.8 15.896 1 51920000 10672 3213 6826 6830 10852 10852 -0.02186539164176793 EEIDAKHQA 9 Unmodified _EEIDAKHQA_ 0 0 0 REV__nc|ENSG00000178209|Q15149-7|PLEC REV__nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 521.1187133789062 2 520.753995 1039.49344 -0.55593 -0.0002895 0.12115 6.3087E-05 -0.43479 -0.00022642 520.7543346340873 35.772 0.34537 33.519 33.366 33.711 -2.2527 14 9 2 0 0 0 0.84208 1 6301 6301 11.64 2.2929 1 1101500 + 10673 18594 6827 6831 10853 10853 -0.024729123214683568 EEIDAKHQA 9 Unmodified _EEIDAKHQA_ 0 0 0 REV__nc|ENSG00000178209|Q15149-7|PLEC REV__nc|ENSG00000178209|Q15149-7|PLEC MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 520.753995 1039.49344 0.21072 0.00010974 -0.45752 -0.00023826 -0.2468 -0.00012852 520.7541386188137 33.57 0.48848 33.57 33.341 33.829 0 0.025247 -0.00032404 NaN 11.64 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 986060 + 10674 18594 6827 6831 -0.024729123214683568 EEIDENFKA 9 Unmodified _EEIDENFKA_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7916870117188 2 547.753661 1093.49277 0.012462 6.8263E-06 -1.3126 -0.00071896 -1.3001 -0.00071213 547.7538083780657 63.345 0.44869 63.345 63.019 63.468 0 20 12 2 0 0 0 0.045725 3 12146 12128;12146;12174 72.968 38.566 1 1738300 10675 1105 6828 6832 10854;10855;10856 10855 -0.05023751761177664 EEIDENFKA 9 Unmodified _EEIDENFKA_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7836303710938 2 547.753661 1093.49277 0.18165 9.9501E-05 0.46571 0.0002551 0.64737 0.0003546 547.7538570992992 66.195 0.42125 63.148 62.843 63.264 -3.047 17 11 2 0 0 0 0.14998 1 12831 12831 51.63 24.001 1 2312700 10676 1105 6828 6832 10857 10857 -0.05023751761177664 EEIEAQEKA 9 Unmodified _EEIEAQEKA_ 0 0 0 ENSG00000126698|ENST00000263697|DNAJC8;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENST00000554535.2_1_14:35899543-35899834:+|nuORF ENSG00000126698|ENST00000263697|DNAJC8 ENSG00000126698|ENST00000263697|DNAJC8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6781616210938 2 523.753661 1045.49277 0.49216 0.00025777 -0.21129 -0.00011066 0.28088 0.00014711 523.7534482921689 22.619 0.40784 21.066 20.826 21.234 -1.5532 39 11 4 0 0 0 0.089388 1 3885 3885 66.457 20.757 1 5451800 10677 3440 6829 6833 10858 10858 -0.02815751761181673 EEIEAQEKA 9 Unmodified _EEIEAQEKA_ 0 0 0 ENSG00000126698|ENST00000263697|DNAJC8;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENST00000554535.2_1_14:35899543-35899834:+|nuORF ENSG00000126698|ENST00000263697|DNAJC8 ENSG00000126698|ENST00000263697|DNAJC8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6896362304688 2 523.753661 1045.49277 -0.65036 -0.00034063 0.9005 0.00047164 0.25014 0.00013101 523.7540389118319 22.534 0.45787 21.081 20.876 21.333 -1.4535 33 12 4 0 0 0 0.0024901 1 3597 3597 114.2 7.2615 1 4872500 10678 3440 6829 6833 10859 10859 -0.02815751761181673 EEIEAQEKA 9 Unmodified _EEIEAQEKA_ 0 0 0 ENSG00000126698|ENST00000263697|DNAJC8;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENST00000554535.2_1_14:35899543-35899834:+|nuORF ENSG00000126698|ENST00000263697|DNAJC8 ENSG00000126698|ENST00000263697|DNAJC8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.700927734375 2 523.753661 1045.49277 -0.45926 -0.00024054 0.59575 0.00031203 0.1365 7.1491E-05 523.7539186701497 22.812 0.40486 21.023 20.818 21.223 -1.7886 29 11 3 0 0 0 0.15274 1 3676 3676 43.772 9.3707 1 3301000 10679 3440 6829 6833 10860 10860 -0.02815751761181673 EEIEAQEKA 9 Unmodified _EEIEAQEKA_ 0 0 0 ENSG00000126698|ENST00000263697|DNAJC8;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENST00000554535.2_1_14:35899543-35899834:+|nuORF ENSG00000126698|ENST00000263697|DNAJC8 ENSG00000126698|ENST00000263697|DNAJC8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.753661 1045.49277 0.17238 9.0283E-05 0.21927 0.00011484 0.39164 0.00020512 523.7536159481128 21.174 0.54086 21.174 20.919 21.46 0 0.053847 0.00025938 NaN 82.529 40 15 4 NaN NaN NaN NaN 0 NaN NaN 0 5423200 10680 3440 6829 6833 -0.02815751761181673 EEIEGFRY 8 Unmodified _EEIEGFRY_ 0 0 0 nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;DDX56|p.R429C|1|0.36|ENSG00000136271|chr7:44569138-44569138|G/A|missense_variant;ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF;ENST00000446987.5_1_7:44605603-44612175:-|nuORF nc|ENSG00000136271|Q9NY93-2|DDX56 nc|ENSG00000136271|Q9NY93-2|DDX56 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2703857421875 2 521.745639 1041.47673 0.30685 0.0001601 -0.25991 -0.00013561 0.046944 2.4493E-05 521.7454702740833 97.954 1.0695 97.954 97.507 98.576 0 93 30 4 0 0 0 0.0017287 2 19192 19144;19192 141.83 66.898 1 98416000 10681 4000 6830 6834 10861;10862 10862 -0.04235413207425154 EEIEGFRY 8 Unmodified _EEIEGFRY_ 0 0 0 nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;DDX56|p.R429C|1|0.36|ENSG00000136271|chr7:44569138-44569138|G/A|missense_variant;ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF;ENST00000446987.5_1_7:44605603-44612175:-|nuORF nc|ENSG00000136271|Q9NY93-2|DDX56 nc|ENSG00000136271|Q9NY93-2|DDX56 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2669677734375 2 521.745639 1041.47673 -0.23942 -0.00012492 0.16272 8.4898E-05 -0.076706 -4.0021E-05 521.7456972349555 102.27 1.1949 98.082 97.68 98.875 -4.1861 98 33 4 0 0 0 6.1564E-07 1 20146 20146 128.37 57.232 1 106090000 10682 4000 6830 6834 10863 10863 -0.04235413207425154 EEIEGFRY 8 Unmodified _EEIEGFRY_ 0 0 0 nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;DDX56|p.R429C|1|0.36|ENSG00000136271|chr7:44569138-44569138|G/A|missense_variant;ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF;ENST00000446987.5_1_7:44605603-44612175:-|nuORF nc|ENSG00000136271|Q9NY93-2|DDX56 nc|ENSG00000136271|Q9NY93-2|DDX56 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2672119140625 2 521.745639 1041.47673 -0.40648 -0.00021208 0.42564 0.00022208 0.019167 1E-05 521.7458296411933 102.28 1.3368 97.955 97.507 98.843 -4.3208 123 38 5 0 0 0 0.14574 1 19648 19648 88.904 27.546 1 106300000 10683 4000 6830 6834 10864 10864 -0.04235413207425154 EEIEGFRY 8 Unmodified _EEIEGFRY_ 0 0 0 nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;DDX56|p.R429C|1|0.36|ENSG00000136271|chr7:44569138-44569138|G/A|missense_variant;ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF;ENST00000446987.5_1_7:44605603-44612175:-|nuORF nc|ENSG00000136271|Q9NY93-2|DDX56 nc|ENSG00000136271|Q9NY93-2|DDX56 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2667236328125 2 521.745639 1041.47673 0.53201 0.00027757 -0.43904 -0.00022907 0.092968 4.8506E-05 521.7453624728927 102 1.1292 97.979 97.494 98.623 -4.0212 116 32 5 0 0 0 0.17438 1 19653 19653 78.149 42.022 1 96463000 10684 4000 6830 6834 10865 10865 -0.04235413207425154 EEIEGLISA 9 Unmodified _EEIEGLISA_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2487487792969 2 480.747847 959.481142 -0.022204 -1.0674E-05 0.2012 9.6725E-05 0.17899 8.6051E-05 480.7478614165463 120.04 1.4116 120.04 119.48 120.89 0 117 39 4 0 0 0 9.7194E-07 8 23579 23579;23612;23616;23625;23628;23676;23730;23772 125.62 66.565 1 85963000 10685 3608 6831 6835 10866;10867;10868;10869;10870;10871;10872;10873 10866 -0.00021948784512915154 EEIEGLISA 9 Unmodified _EEIEGLISA_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24945068359375 2 480.747847 959.481142 0.19063 9.1645E-05 -0.14283 -6.8664E-05 0.047802 2.2981E-05 480.74776077540105 124.46 1.9371 119.89 119.17 121.1 -4.5757 142 54 5 0 0 0 1.4195E-07 5 24516 24516;24561;24574;24610;24636 147.83 43.032 1 109110000 10686 3608 6831 6835 10874;10875;10876;10877;10878 10874 -0.00021948784512915154 EEIEGLISA 9 Unmodified _EEIEGLISA_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2494812011719 2 480.747847 959.481142 0.39314 0.000189 -0.21683 -0.00010424 0.17631 8.476E-05 480.7476854761429 124.72 1.8222 119.96 119.25 121.07 -4.7681 137 51 5 0 0 0 1.4195E-07 6 23933 23889;23891;23933;23977;24059;24147 147.83 43.032 1 87697000 10687 3608 6831 6835 10879;10880;10881;10882;10883;10884 10881 -0.00021948784512915154 EEIEGLISA 9 Unmodified _EEIEGLISA_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2341003417969 2 480.747847 959.481142 0.18574 8.9294E-05 0.026 1.2499E-05 0.21174 0.00010179 480.7478006303453 124.62 1.3235 119.97 119.49 120.81 -4.6495 119 36 5 0 0 0 1.4195E-07 12 24025 23914;23954;23955;23998;24002;24006;24025;24041;24070;24075;24080;24083 147.83 70.579 1 67514000 10688 3608 6831 6835 10885;10886;10887;10888;10889;10890;10891;10892;10893;10894;10895;10896 10891 -0.00021948784512915154 EEIENAINTF 10 Unmodified _EEIENAINTF_ 0 0 0 CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant;CCDC112|p.E223Sfs*20|2|0.29|ENSG00000164221|chr5:115275219-115275219|T/-|frameshift_variant;nc|ENSG00000164221|Q8NEF3|CCDC112;ENSG00000164221|ENST00000379611|CCDC112 CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2513427734375 2 590.280043 1178.54553 NaN NaN NaN NaN NaN NaN NaN 70.133 1 66.666 66.166 67.166 -3.467 0 0 0 0.22544 1 13278 13278 19.257 6.2145 1 10689 409 6832 6836 10897 10897 -0.03659793698375324 EEIERLTA 8 Unmodified _EEIERLTA_ 0 0 0 PPP4R4|p.V49A|1|0.23|ENSG00000119698|chr14:94176082-94176082|T/C|missense_variant PPP4R4|p.V49A|1|0.23|ENSG00000119698|chr14:94176082-94176082|T/C|missense_variant PPP4R4|p.V49A|1|0.23|ENSG00000119698|chr14:94176082-94176082|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25494384765625 2 480.753464 959.492375 -0.13205 -6.3485E-05 0.38057 0.00018296 0.24852 0.00011948 480.753678497933 55.437 0.92626 55.437 54.802 55.728 0 37 25 2 0 0 0 0.69887 1 10626 10626 14.582 2.0501 1 1426100 10690 12822 6833 6837 10898 10898 0.011008733096105061 EEIERLTA 8 Unmodified _EEIERLTA_ 0 0 0 PPP4R4|p.V49A|1|0.23|ENSG00000119698|chr14:94176082-94176082|T/C|missense_variant PPP4R4|p.V49A|1|0.23|ENSG00000119698|chr14:94176082-94176082|T/C|missense_variant PPP4R4|p.V49A|1|0.23|ENSG00000119698|chr14:94176082-94176082|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2547912597656 2 480.753464 959.492375 0.10199 4.9033E-05 0.21065 0.00010127 0.31264 0.0001503 480.75363635957405 58.645 0.63677 55.393 54.996 55.632 -3.2517 30 17 2 0 0 0 0.69887 1 10930 10930 14.582 1.0738 1 1652300 10691 12822 6833 6837 10899 10899 0.011008733096105061 EEIERLTA 8 Unmodified _EEIERLTA_ 0 0 0 PPP4R4|p.V49A|1|0.23|ENSG00000119698|chr14:94176082-94176082|T/C|missense_variant PPP4R4|p.V49A|1|0.23|ENSG00000119698|chr14:94176082-94176082|T/C|missense_variant PPP4R4|p.V49A|1|0.23|ENSG00000119698|chr14:94176082-94176082|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2547302246094 2 480.753464 959.492375 0.037657 1.8104E-05 0.3385 0.00016274 0.37616 0.00018084 480.75362413040494 58.657 0.72718 55.452 55.026 55.753 -3.2052 40 20 3 0 0 0 0.69887 1 10984 10984 14.582 1.0738 1 1525700 10692 12822 6833 6837 10900 10900 0.011008733096105061 EEIESRRY 8 Unmodified _EEIESRRY_ 0 0 0 ENST00000486016.1_1_2:75917741-75921519:-|nuORF ENST00000486016.1_1_2:75917741-75921519:-|nuORF ENST00000486016.1_1_2:75917741-75921519:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2666015625 2 541.26727 1080.51999 0.9109 0.00049304 -0.65567 -0.00035489 0.25523 0.00013815 541.2669539597139 28.932 0.2035 26.976 26.846 27.049 -1.9561 10 5 2 0 0 0 0.31517 1 5185 5185 36.044 5.8194 1 425600 10693 10450 6834 6838 10901 10901 -0.01705223430121805 EEIESRRY 8 Unmodified _EEIESRRY_ 0 0 0 ENST00000486016.1_1_2:75917741-75921519:-|nuORF ENST00000486016.1_1_2:75917741-75921519:-|nuORF ENST00000486016.1_1_2:75917741-75921519:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2659301757812 2 541.26727 1080.51999 0.36014 0.00019493 -1.5617 -0.00084528 -1.2015 -0.00065035 541.267340895308 28.814 0.20605 27.059 26.911 27.117 -1.7552 9 5 3 0 0 0 0.31517 1 4870 4870 36.044 5.8194 1 425240 10694 10450 6834 6838 10902 10902 -0.01705223430121805 EEIESRRY 8 Unmodified _EEIESRRY_ 0 0 0 ENST00000486016.1_1_2:75917741-75921519:-|nuORF ENST00000486016.1_1_2:75917741-75921519:-|nuORF ENST00000486016.1_1_2:75917741-75921519:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2652587890625 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 54.046 1 50.91 50.41 51.41 -3.1352 0 0 0 0.21323 1 9958 9958 14.582 1.0738 1 10695 10450 6834 6838 10903 10903 -0.01705223430121805 EEIFQQLNQ 9 Unmodified _EEIFQQLNQ_ 0 0 0 ENSG00000169019|ENST00000381571|COMMD8 ENSG00000169019|ENST00000381571|COMMD8 ENSG00000169019|ENST00000381571|COMMD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.336181640625 2 574.782753 1147.55095 -0.13475 -7.745E-05 -0.045417 -2.6105E-05 -0.18016 -0.00010355 574.7827098847431 70.109 1.1632 66.859 66.262 67.425 -3.2492 93 32 4 0 0 0 0.46541 1 13682 13682 21.747 5.8995 1 11546000 10696 5957 6835 6839 10904 10904 -0.016920701159278906 EEIFQQLNQ 9 Unmodified _EEIFQQLNQ_ 0 0 0 ENSG00000169019|ENST00000381571|COMMD8 ENSG00000169019|ENST00000381571|COMMD8 ENSG00000169019|ENST00000381571|COMMD8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 574.782753 1147.55095 -0.039409 -2.2651E-05 -0.10747 -6.1773E-05 -0.14688 -8.4424E-05 574.7826345461712 66.82 1.0588 66.82 66.274 67.333 0 -0.038011 0.0002406 NaN 21.747 77 29 3 NaN NaN NaN NaN 0 NaN NaN 0 12409000 10697 5957 6835 6839 -0.016920701159278906 EEIFQQLNQ 9 Unmodified _EEIFQQLNQ_ 0 0 0 ENSG00000169019|ENST00000381571|COMMD8 ENSG00000169019|ENST00000381571|COMMD8 ENSG00000169019|ENST00000381571|COMMD8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 574.782753 1147.55095 0.35596 0.0002046 -0.5579 -0.00032067 -0.20193 -0.00011607 574.7823410625991 70.312 1.304 66.845 66.217 67.521 -3.467 -0.012794 -0.0002772 NaN 21.747 97 36 4 NaN NaN NaN NaN 0 NaN NaN 0 9431800 10698 5957 6835 6839 -0.016920701159278906 EEIFSLHGF 9 Unmodified _EEIFSLHGF_ 0 0 0 SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant;nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8 SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2132873535156 3 360.178313 1077.51311 -0.11699 -4.2136E-05 -0.20232 -7.287E-05 -0.3193 -0.00011501 360.1783007071565 22.367 0.67224 20.913 20.661 21.333 -1.4535 37 18 3 0 0 0 0.61228 1 3561 3561 12.241 4.0851 1 3772600 10699 4212 6836 6840 10905 10905 -0.022545363107155936 EEIFSLHGF 9 Unmodified _EEIFSLHGF_ 0 0 0 SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant;nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8 SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2021179199219 3 360.178313 1077.51311 -1.2179 -0.00043867 0.9521 0.00034293 -0.26582 -9.5743E-05 360.1786478522041 22.677 0.47744 20.889 20.679 21.156 -1.7886 23 13 2 0 0 0 0.80264 1 3618 3618 12.241 4.9514 1 2884100 10700 4212 6836 6840 10906 10906 -0.022545363107155936 EEIFSLHGF 9 Unmodified _EEIFSLHGF_ 0 0 0 SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant;nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8 SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 360.178313 1077.51311 -0.25584 -9.2147E-05 0.35844 0.0001291 0.10261 3.6957E-05 360.17843025056396 20.923 0.79993 20.923 20.562 21.362 0 0.01495 -1.6649E-05 NaN 12.241 43 22 3 NaN NaN NaN NaN 0 NaN NaN 0 3182400 10701 4212 6836 6840 -0.022545363107155936 EEIIIAEY 8 Unmodified _EEIIIAEY_ 0 0 0 nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2679748535156 2 490.252766 978.490978 0.18751 9.1927E-05 0.084773 4.156E-05 0.27228 0.00013349 490.25272820504887 129.12 1.0413 129.12 128.6 129.64 0 86 29 4 0 0 0 0.012251 5 25500 25424;25472;25500;25519;25572 137.59 55.721 1 35010000 10702 1096 6837 6841 10907;10908;10909;10910;10911 10909 0.0008723922085209779 EEIIIAEY 8 Unmodified _EEIIIAEY_ 0 0 0 nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2745361328125 2 490.252766 978.490978 NaN NaN NaN NaN NaN NaN NaN 119.44 1 119.44 118.94 119.94 0 0 0 0 0.071271 1 23534 23534 49.669 9.2203 1 10703 1096 6837 6841 10912 10912 0.0008723922085209779 EEIIIAEY 8 Unmodified _EEIIIAEY_ 0 0 0 nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25286865234375 2 490.252766 978.490978 0.10724 5.2574E-05 0.071326 3.4968E-05 0.17857 8.7542E-05 490.2527453062687 133.94 1.1994 129.3 128.86 130.06 -4.6399 99 33 5 0 0 0 0.055901 5 26387 26339;26387;26431;26475;26521 114.94 36.959 1 53056000 10704 1096 6837 6841 10913;10914;10915;10916;10917 10914 0.0008723922085209779 EEIIIAEY 8 Unmodified _EEIIIAEY_ 0 0 0 nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25323486328125 2 490.252766 978.490978 NaN NaN NaN NaN NaN NaN NaN 134.74 1 130.1 129.6 130.6 -4.6399 0 0 0 0.018607 1 26572 26572 63.563 23.114 1 10705 1096 6837 6841 10918 10918 0.0008723922085209779 EEIIIAEY 8 Unmodified _EEIIIAEY_ 0 0 0 nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2528381347656 2 490.252766 978.490978 0.14093 6.9092E-05 0.067734 3.3207E-05 0.20867 0.0001023 490.2527318777617 134.25 1.1434 129.38 128.85 130 -4.8726 102 32 4 0 0 0 0.031302 4 25764 25719;25764;25814;25862 129.2 43.283 1 46634000 10706 1096 6837 6841 10919;10920;10921;10922 10920 0.0008723922085209779 EEIIIAEY 8 Unmodified _EEIIIAEY_ 0 0 0 nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25286865234375 2 490.252766 978.490978 -0.031956 -1.5666E-05 0.35118 0.00017216 0.31922 0.0001565 490.25287458459644 134.16 1.1304 129.34 128.81 129.94 -4.8175 95 31 4 0 0 0 0.031302 5 25793 25742;25793;25839;25881;25923 129.2 51.216 1 37309000 10707 1096 6837 6841 10923;10924;10925;10926;10927 10924 0.0008723922085209779 EEIKDFLLTA 10 Unmodified _EEIKDFLLTA_ 0 0 0 RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2680053710938 2 589.818804 1177.62306 0.35259 0.00020797 -0.00036255 -2.1384E-07 0.35223 0.00020775 589.8187336109524 154.81 1.1638 154.81 154.29 155.45 0 101 32 4 0 0 0 1.9136E-05 4 31096 31031;31042;31096;31153 139.78 75.821 1 159540000 10708 6242 6838 6842 10928;10929;10930;10931 10930 0.041348442378193795 EEIKDFLLTA 10 Unmodified _EEIKDFLLTA_ 0 0 0 RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2694091796875 2 589.818804 1177.62306 0.6206 0.00036604 -0.30941 -0.0001825 0.31119 0.00018355 589.8185596281252 159.59 1.0004 154.8 154.33 155.33 -4.7952 105 27 5 0 0 0 5.9283E-11 3 31717 31717;31764;31797 154.75 64.618 1 187700000 10709 6242 6838 6842 10932;10933;10934 10932 0.041348442378193795 EEIKDFLLTA 10 Unmodified _EEIKDFLLTA_ 0 0 0 RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2689819335938 2 589.818804 1177.62306 0.59327 0.00034992 -0.17201 -0.00010145 0.42126 0.00024847 589.8186341295132 160.19 1.1689 154.96 154.44 155.61 -5.2299 119 32 5 0 0 0 1.9136E-05 5 31082 31064;31082;31102;31169;31221 139.78 62.957 1 139790000 10710 6242 6838 6842 10935;10936;10937;10938;10939 10936 0.041348442378193795 EEIKDFLLTA 10 Unmodified _EEIKDFLLTA_ 0 0 0 RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2755126953125 2 589.818804 1177.62306 0.45216 0.00026669 -0.04396 -2.5928E-05 0.4082 0.00024076 589.8187159951643 160.26 1.1291 155.01 154.4 155.53 -5.2526 128 31 6 0 0 0 5.9283E-11 2 31106 31106;31113 154.75 64.618 1 120410000 10711 6242 6838 6842 10940;10941 10940 0.041348442378193795 EEIKNASPPP 10 Unmodified _EEIKNASPPP_ 0 0 0 REV__ENSG00000077063|ENST00000160373|CTTNBP2 REV__ENSG00000077063|ENST00000160373|CTTNBP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2789306640625 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 32.404 1 32.404 31.904 32.904 0 0 0 0 0.22588 1 5884 5884 11.64 2.2572 1 + 10712 14356 6839 6843 10942 10942 0.008088313724101681 EEIKSNEL 8 Unmodified _EEIKSNEL_ 0 0 0 CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant;ENSG00000165813|ENST00000369287|CCDC186 CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2453918457031 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 101.66 1 97.342 96.842 97.842 -4.3208 0 0 0 0.17894 1 19456 19456 32.117 1.8922 1 10713 419 6840 6844 10943 10943 -0.0054283292729451205 EEILAFIK 8 Unmodified _EEILAFIK_ 0 0 0 ENST00000489450.1_1_1:76253229-76255866:+|nuORF;ENST00000461653.5_1_1:76253229-76255104:+|nuORF;ENST00000471759.5_1_1:76253229-76255856:+|nuORF;ENSG00000137955|ENST00000319942|RABGGTB ENST00000489450.1_1_1:76253229-76255866:+|nuORF ENST00000489450.1_1_1:76253229-76255866:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7823791503906 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 134.12 1 129.31 128.81 129.81 -4.8175 0 0 0 0.22636 1 25822 25822 0.25148 0 1 10714 4129 6841 6845 10944 10944 0.06612126217089553 EEILARVV 8 Unmodified _EEILARVV_ 0 0 0 CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2 CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2471923828125 2 464.776742 927.538931 0.34936 0.00016237 -0.26432 -0.00012285 0.085043 3.9526E-05 464.7765208245549 106.75 0.76932 106.75 106.43 107.2 0 37 21 2 0 0 0 0.72565 1 21012 21012 34.102 3.8776 1 3871000 10715 384 6842 6846 10945 10945 0.07226357931563143 EEILARVV 8 Unmodified _EEILARVV_ 0 0 0 CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2 CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24920654296875 2 464.776742 927.538931 -0.18507 -8.6018E-05 0.27677 0.00012864 0.091697 4.2618E-05 464.7767640477559 110.77 0.71431 106.28 105.93 106.64 -4.4915 32 19 2 0 0 0 8448 1 21217 21217 23.79 5.4167 1 1791300 10716 384 6842 6846 10946 10946 0.07226357931563143 EEILARVV 8 Unmodified _EEILARVV_ 0 0 0 CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2 CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24713134765625 2 464.776742 927.538931 0.62834 0.00029204 -0.63997 -0.00029744 -0.011625 -5.4028E-06 464.77639951047547 110.48 0.77321 106.25 105.99 106.76 -4.2289 35 21 2 0 0 0 0.9455 1 21233 21233 23.148 3.7094 1 1686700 10717 384 6842 6846 10947 10947 0.07226357931563143 EEILARVV 8 Unmodified _EEILARVV_ 0 0 0 CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2 CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.776742 927.538931 -0.41586 -0.00019328 0.37315 0.00017343 -0.04271 -1.985E-05 464.77685266613895 110.49 0.62608 106.07 105.85 106.48 -4.4174 -0.12925 0.00031908 NaN 23.148 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1519300 10718 384 6842 6846 0.07226357931563143 EEILKIYEL 9 Unmodified _EEILKIYEL_ 0 0 0 REV__tr|U7SV99|U7SV99_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01187PE=3SV=1 REV__tr|U7SV99|U7SV99_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01187PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3171997070312 2 575.323722 1148.63289 0.29925 0.00017217 0.30598 0.00017604 0.60523 0.0003482 575.3237343967351 158.86 0.80276 158.86 158.5 159.3 0 52 22 3 0 0 0 0.25702 1 31860 31860 34.102 2.8341 1 10402000 + 10719 25190 6843 6847 10948 10948 0.06452032243191752 EEILKSQTP 9 Unmodified _EEILKSQTP_ 0 0 0 CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENST00000502249.6_1_4:119435248-119475252:+|nuORF CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;ENST00000502249.6_1_4:119435248-119475252:+|nuORF CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.277099609375 2 522.782222 1043.54989 -0.63405 -0.00033147 -0.20034 -0.00010473 -0.83439 -0.0004362 522.7826147791477 48.607 0.49354 45.608 45.368 45.861 -2.999 19 13 2 0 0 0 0.54058 1 8858 8858 8.1555 7.5287 1 1626900 10720 490;10621 6844 6848 10949 10949 0.029857155152058112 EEILKSQTP 9 Unmodified _EEILKSQTP_ 0 0 0 CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENST00000502249.6_1_4:119435248-119475252:+|nuORF CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;ENST00000502249.6_1_4:119435248-119475252:+|nuORF CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 522.782222 1043.54989 -0.030645 -1.6021E-05 -0.45998 -0.00024047 -0.49062 -0.00025649 522.7826006119403 48.564 0.55023 45.614 45.436 45.987 -2.9499 0.040398 0.00014179 NaN 8.1555 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1742500 10721 490;10621 6844 6848 0.029857155152058112 EEILSLIY 8 Unmodified _EEILSLIY_ 0 0 0 REV__nc|ENSG00000066027|Q15172-2|PPP2R5A REV__nc|ENSG00000066027|Q15172-2|PPP2R5A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2524719238281 2 490.270958 978.527364 NaN NaN NaN NaN NaN NaN NaN 130.2 1 130.2 129.7 130.7 0 0 0 0 0.2074 1 25730 25730 19.439 1.304 1 + 10722 14197 6845 6849 10950 10950 0.03724116117575704 EEIMGMREA 9 Oxidation (M) _EEIM(Oxidation (M))GMREA_ EEIM(0.5)GM(0.5)REA EEIM(0)GM(0)REA 0 0 1 REV__nc|ENSG00000166405|Q7Z5B4-3|RIC3 REV__nc|ENSG00000166405|Q7Z5B4-3|RIC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.268798828125 2 541.236267 1080.45798 0.27997 0.00015153 -0.37289 -0.00020182 -0.092916 -5.0289E-05 541.2364055501504 20.336 0.5302 20.336 20.032 20.562 0 23 14 2 0 0 0 0.10047 1 3378 3378 71.922 37.521 2 1953800 + 10723 17845 6846 6850 10951 10951 125;126 -0.07903034165155987 EEIMGMREA 9 Oxidation (M) _EEIM(Oxidation (M))GMREA_ EEIM(0.5)GM(0.5)REA EEIM(0)GM(0)REA 0 0 1 REV__nc|ENSG00000166405|Q7Z5B4-3|RIC3 REV__nc|ENSG00000166405|Q7Z5B4-3|RIC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2776489257812 2 541.236267 1080.45798 0.72637 0.00039314 -0.70908 -0.00038378 0.017291 9.3585E-06 541.2360672624793 21.739 0.46756 20.265 20.016 20.484 -1.4742 27 12 3 0 0 0 0.07738 1 3696 3696 62.573 28.171 2 1528500 + 10724 17845 6846 6850 10952 10952 125;126 -0.07903034165155987 EEIMGMREA 9 Oxidation (M) _EEIM(Oxidation (M))GMREA_ EEIM(0.5)GM(0.5)REA EEIM(0)GM(0)REA 0 0 1 REV__nc|ENSG00000166405|Q7Z5B4-3|RIC3 REV__nc|ENSG00000166405|Q7Z5B4-3|RIC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2673950195312 2 541.236267 1080.45798 -0.099021 -5.3594E-05 0.46717 0.00025285 0.36815 0.00019925 541.2366114195514 21.625 0.45263 20.24 20.002 20.455 -1.3847 23 12 2 0 0 0 0.061087 1 3407 3407 81.89 40.051 2 1661500 + 10725 17845 6846 6850 10953 10953 125;126 -0.07903034165155987 EEIMGMREA 9 Oxidation (M) _EEIM(Oxidation (M))GMREA_ 0 0 1 REV__nc|ENSG00000166405|Q7Z5B4-3|RIC3 REV__nc|ENSG00000166405|Q7Z5B4-3|RIC3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 541.236267 1080.45798 -0.55808 -0.00030205 0.67871 0.00036734 0.12063 6.529E-05 541.2368950130078 21.929 0.44016 20.208 20.019 20.46 -1.7211 -0.054177 0.00063866 NaN 81.89 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 806160 + 10726 17845 6846 6850 125;126 -0.07903034165155987 EEINFIHSV 9 Unmodified _EEINFIHSV_ 0 0 0 KRT75|p.L391Ffs*7|1|0.2|ENSG00000170454|chr12:52428465-52428466|-/A|frameshift_variant;ENSG00000170454|ENST00000252245|KRT75 KRT75|p.L391Ffs*7|1|0.2|ENSG00000170454|chr12:52428465-52428466|-/A|frameshift_variant KRT75|p.L391Ffs*7|1|0.2|ENSG00000170454|chr12:52428465-52428466|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7797241210938 2 544.274564 1086.53457 0.46009 0.00025042 -0.23427 -0.00012751 0.22582 0.00012291 544.2748906318961 98.193 1.0695 98.193 97.507 98.576 0 38 19 3 0 0 0 0.19311 2 19254 19207;19254 37.974 5.061 1 3786900 10727 6069 6847 6851 10954;10955 10955 -0.005231512820046191 EEINITFTL 9 Unmodified _EEINITFTL_ 0 0 0 ENST00000484751.1_1_7:66410067-66416200:+|nuORF;nc|ENSG00000106609|Q9NWD8-2|TMEM248;ENSG00000106609|ENST00000341567|TMEM248 ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENST00000484751.1_1_7:66410067-66416200:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.276611328125 2 540.284597 1078.55464 0.56504 0.00030528 -0.10604 -5.729E-05 0.459 0.00024799 540.2843878213868 105.08 0.76881 105.08 104.76 105.53 0 47 21 3 0 0 0 0.40602 1 20669 20669 25.399 1.3787 1 6665000 10728 2394 6848 6852 10956 10956 0.01850599657973362 EEINITFTL 9 Unmodified _EEINITFTL_ 0 0 0 ENST00000484751.1_1_7:66410067-66416200:+|nuORF;nc|ENSG00000106609|Q9NWD8-2|TMEM248;ENSG00000106609|ENST00000341567|TMEM248 ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENST00000484751.1_1_7:66410067-66416200:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.284597 1078.55464 -0.24197 -0.00013073 0.5697 0.0003078 0.32772 0.00017706 540.28467886226 109.47 0.80435 105.09 104.71 105.52 -4.3776 -0.0054897 0.00016074 NaN 25.399 59 22 3 NaN NaN NaN NaN 0 NaN NaN 0 7856200 10729 2394 6848 6852 0.01850599657973362 EEINITFTL 9 Unmodified _EEINITFTL_ 0 0 0 ENST00000484751.1_1_7:66410067-66416200:+|nuORF;nc|ENSG00000106609|Q9NWD8-2|TMEM248;ENSG00000106609|ENST00000341567|TMEM248 ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENST00000484751.1_1_7:66410067-66416200:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.284597 1078.55464 -0.091284 -4.932E-05 0.60317 0.00032589 0.51189 0.00027657 540.2847252991758 109.58 0.73914 105.13 104.78 105.52 -4.4518 0.027419 0.00019691 NaN 25.399 53 20 3 NaN NaN NaN NaN 0 NaN NaN 0 8099700 10730 2394 6848 6852 0.01850599657973362 EEINRQVTY 9 Unmodified _EEINRQVTY_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3358154296875 2 576.288202 1150.56185 0.61441 0.00035408 -1.8805 -0.0010837 -1.2661 -0.00072963 576.7882928662173 45.773 0.55466 45.773 45.448 46.003 0 25 15 2 0 0 0 0.14943 1 8595 8595 61.602 29.296 1 1999800 10731 1659 6849 6853 10957 10957 -0.007406677416156526 EEINRQVTY 9 Unmodified _EEINRQVTY_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3281860351562 2 576.288202 1150.56185 -0.083378 -4.805E-05 -0.94934 -0.00054709 -1.0327 -0.00059514 576.2875691509897 48.818 1.4645 45.949 45.418 46.882 -2.869 75 41 3 0 0 0 0.012196 2 9240 9240;9264 100.09 63.016 1 10699000 10732 1659 6849 6853 10958;10959 10958 -0.007406677416156526 EEINRQVTY 9 Unmodified _EEINRQVTY_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3367309570312 2 576.288202 1150.56185 NaN NaN NaN NaN NaN NaN NaN 70.263 1 66.683 66.183 67.183 -3.5798 0 0 0 0.22621 1 13242 13242 15.847 1.2655 1 10733 1659 6849 6853 10960 10960 -0.007406677416156526 EEINRQVTY 9 Unmodified _EEINRQVTY_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3319702148438 2 576.288202 1150.56185 -0.070143 -4.0423E-05 -0.9579 -0.00055203 -1.028 -0.00059245 576.2876836727982 48.951 1.2199 45.945 45.415 46.635 -3.0068 73 34 3 0 0 0 0.012196 2 8985 8984;8985 100.09 65.159 1 8176700 10734 1659 6849 6853 10961;10962 10962 -0.007406677416156526 EEIPDDFD 8 Unmodified _EEIPDDFD_ 0 0 0 ENST00000539192.1_1_12:8202954-8205443:+|nuORF;ENSG00000065970|ENST00000162391|FOXJ2 ENST00000539192.1_1_12:8202954-8205443:+|nuORF ENST00000539192.1_1_12:8202954-8205443:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2591247558594 2 490.198187 978.381822 NaN NaN NaN NaN NaN NaN NaN 126.7 1 122 121.5 122.5 -4.6998 0 0 0 0.19492 1 24373 24373 26.341 10.494 1 10735 1364 6850 6854 10963 10963 -0.10823391469273247 EEIPDSPGI 9 Unmodified _EEIPDSPGI_ 0 0 0 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;ENST00000497103.1_1_10:32101629-32132466:-|nuORF nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7325134277344 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 94.892 1 90.842 90.342 91.342 -4.0496 0 0 0 0.1761 1 18599 18599 26.884 5.137 1 10736 5618 6851 6855 10964 10964 -0.029665218185982667 EEIPDSPGI 9 Unmodified _EEIPDSPGI_ 0 0 0 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;ENST00000497103.1_1_10:32101629-32132466:-|nuORF nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73193359375 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 94.905 1 90.714 90.214 91.214 -4.1911 0 0 0 0.13613 1 18110 18110 32.305 9.1571 1 10737 5618 6851 6855 10965 10965 -0.029665218185982667 EEIPDSPGI 9 Unmodified _EEIPDSPGI_ 0 0 0 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;ENST00000497103.1_1_10:32101629-32132466:-|nuORF nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73193359375 2 478.732197 955.449842 0.018744 8.9732E-06 0.81755 0.00039139 0.83629 0.00040036 478.73221678177435 94.562 0.48357 90.681 90.501 90.984 -3.881 18 13 2 0 0 0 0.12183 1 18130 18130 48.346 26.599 1 875000 10738 5618 6851 6855 10966 10966 -0.029665218185982667 EEIPKNYS 8 Unmodified _EEIPKNYS_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP TRRAP-ASNS|1|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25518798828125 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 119.07 1 119.07 118.57 119.57 0 0 0 0 0.087131 1 23457 23457 46.921 6.4723 1 10739 26528;7260 6852 6856 10967 10967 -0.0242681558172535 EEIPKNYS 8 Unmodified _EEIPKNYS_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP TRRAP-ASNS|1|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2560729980469 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 119.32 1 119.32 118.82 119.82 0 0 0 0 0.087131 1 23508 23508 46.921 6.4723 1 10740 26528;7260 6852 6856 10968 10968 -0.0242681558172535 EEIPKNYS 8 Unmodified _EEIPKNYS_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP TRRAP-ASNS|1|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26373291015625 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 119.33 1 119.33 118.83 119.83 0 0 0 0 0.13047 1 23511 23511 15.478 5.4046 1 10741 26528;7260 6852 6856 10969 10969 -0.0242681558172535 EEIPKNYS 8 Unmodified _EEIPKNYS_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP TRRAP-ASNS|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2579345703125 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 124.19 1 119.46 118.96 119.96 -4.731 0 0 0 0.087131 1 23851 23851 46.921 6.4723 1 10742 26528;7260 6852 6856 10970 10970 -0.0242681558172535 EEIPKNYS 8 Unmodified _EEIPKNYS_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP TRRAP-ASNS|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26434326171875 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 124.02 1 119.43 118.93 119.93 -4.5926 0 0 0 0.087131 1 23867 23867 46.921 6.4723 1 10743 26528;7260 6852 6856 10971 10971 -0.0242681558172535 EEIPRLQA 8 Unmodified _EEIPRLQA_ 0 0 0 nc|ENSG00000087299|Q9H9P8-2|L2HGDH;ENSG00000087299|ENST00000267436|L2HGDH nc|ENSG00000087299|Q9H9P8-2|L2HGDH nc|ENSG00000087299|Q9H9P8-2|L2HGDH MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7221374511719 2 478.263999 954.513445 -0.04827 -2.3086E-05 -0.039946 -1.9105E-05 -0.088216 -4.2191E-05 478.26391804219566 35.942 0.49331 35.942 35.789 36.282 0 19 13 2 0 0 0 0.68128 1 6581 6581 16.942 4.4107 1 2513100 10744 1714 6853 6857 10972 10972 0.03436883409119673 EEIPSRIQA 9 Unmodified _EEIPSRIQA_ 0 0 0 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2816162109375 2 521.780013 1041.54547 -0.10259 -5.3529E-05 0.5394 0.00028145 0.43681 0.00022792 521.7801980313048 60.87 0.59794 60.87 60.591 61.189 0 37 16 3 0 0 0 0.44932 1 11712 11712 22.736 4.5899 1 4417100 10745 1535 6854 6858 10973 10973 0.026362510922808724 EEIPSRIQA 9 Unmodified _EEIPSRIQA_ 0 0 0 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2815551757812 2 521.780013 1041.54547 0.32933 0.00017184 -0.30459 -0.00015893 0.02474 1.2909E-05 521.7798052078427 64.13 0.55932 60.874 60.606 61.165 -3.2567 46 15 4 0 0 0 0.11828 2 12059 12046;12059 49.554 3.8904 1 4940100 10746 1535 6854 6858 10974;10975 10975 0.026362510922808724 EEIPTHSF 8 Unmodified _EEIPTHSF_ 0 0 0 nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135 nc|ENSG00000166575|Q86UB9-2|TMEM135 nc|ENSG00000166575|Q86UB9-2|TMEM135 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2438049316406 2 480.227082 958.439611 -0.082058 -3.9406E-05 0.28242 0.00013562 0.20036 9.6218E-05 480.2271209913353 70.474 0.74026 67.225 66.825 67.565 -3.2492 68 20 4 0 0 0 0.11385 1 13742 13742 60.39 34.048 1 25818000 10747 5733 6855 6859 10976 10976 -0.04127084753190502 EEIPTHSF 8 Unmodified _EEIPTHSF_ 0 0 0 nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135 nc|ENSG00000166575|Q86UB9-2|TMEM135 nc|ENSG00000166575|Q86UB9-2|TMEM135 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.227082 958.439611 -0.35793 -0.00017189 0.65958 0.00031675 0.30165 0.00014486 480.22732245049986 67.123 0.78415 67.123 66.765 67.549 0 -0.0862 0.00050814 NaN 60.39 64 21 4 NaN NaN NaN NaN 0 NaN NaN 0 20543000 10748 5733 6855 6859 -0.04127084753190502 EEIPTHSF 8 Unmodified _EEIPTHSF_ 0 0 0 nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135 nc|ENSG00000166575|Q86UB9-2|TMEM135 nc|ENSG00000166575|Q86UB9-2|TMEM135 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.227082 958.439611 0.37374 0.00017948 -0.20988 -0.00010079 0.16385 7.8686E-05 480.22687861170346 70.8 0.77142 67.22 66.838 67.609 -3.5798 0.010211 -0.00032694 NaN 60.39 67 21 4 NaN NaN NaN NaN 0 NaN NaN 0 21927000 10749 5733 6855 6859 -0.04127084753190502 EEIPTHSF 8 Unmodified _EEIPTHSF_ 0 0 0 nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135 nc|ENSG00000166575|Q86UB9-2|TMEM135 nc|ENSG00000166575|Q86UB9-2|TMEM135 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.227082 958.439611 0.30738 0.00014761 -0.16282 -7.8189E-05 0.14457 6.9425E-05 480.22690848741814 70.737 0.88178 67.27 66.814 67.696 -3.467 0.060561 -0.00028174 NaN 60.39 72 24 4 NaN NaN NaN NaN 0 NaN NaN 0 23782000 10750 5733 6855 6859 -0.04127084753190502 EEIQGLTTA 9 Unmodified _EEIQGLTTA_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24517822265625 2 481.245472 960.476391 -0.14654 -7.0523E-05 0.34868 0.0001678 0.20213 9.7276E-05 481.2455870728985 71.145 1.1164 71.145 70.626 71.742 0 105 31 5 0 0 0 3.4741E-07 8 13720 13708;13720;13722;13762;13764;13806;13809;13857 114.65 49.18 1 65385000 10751 1457 6856 6860 10977;10978;10979;10980;10981;10982;10983;10984 10978 -0.005428329273058807 EEIQGLTTA 9 Unmodified _EEIQGLTTA_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2455139160156 2 481.245472 960.476391 -0.039409 -1.8965E-05 0.02721 1.3095E-05 -0.012199 -5.8708E-06 481.24538744658315 74.415 2.2491 71.051 69.582 71.831 -3.3643 164 63 7 0 0 0 2.5498E-05 10 14589 14445;14447;14466;14476;14499;14544;14545;14589;14592;14643 114.65 38.72 1 81098000 10752 1457 6856 6860 10985;10986;10987;10988;10989;10990;10991;10992;10993;10994 10992 -0.005428329273058807 EEIQGLTTA 9 Unmodified _EEIQGLTTA_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2373962402344 2 481.245472 960.476391 0.18962 9.1252E-05 0.0014978 7.208E-07 0.19111 9.1973E-05 481.245416525842 74.865 1.2543 71.189 70.689 71.944 -3.6764 125 35 6 0 0 0 0.01249 7 14118 14085;14118;14125;14144;14226;14271;14300 99.799 14.527 1 53085000 10753 1457 6856 6860 10995;10996;10997;10998;10999;11000;11001 10996 -0.005428329273058807 EEIQGLTTA 9 Unmodified _EEIQGLTTA_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24554443359375 2 481.245472 960.476391 0.25062 0.00012061 -0.096818 -4.6593E-05 0.1538 7.4018E-05 481.24536879287905 74.708 1.2207 71.114 70.71 71.931 -3.594 121 34 5 0 0 0 7.8779E-07 8 14270 14148;14181;14222;14225;14270;14271;14317;14330 103.35 42.499 1 58496000 10754 1457 6856 6860 11002;11003;11004;11005;11006;11007;11008;11009 11006 -0.005428329273058807 EEIQIMIKEK 10 Unmodified _EEIQIMIKEK_ 0 0 0 CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant;CENPE|p.S2121Efs*18|1|0.05|ENSG00000138778|chr4:103136302-103136303|-/TGCTC|frameshift_variant;CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant;nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7586669921875 2 630.847039 1259.67952 NaN NaN NaN NaN NaN NaN NaN 93.462 1 93.462 92.962 93.962 0 0 0 0 2.8426 1 18287 18287 0.013265 0.0073095 1 10755 483 6857 6861 11010 11010 0.060071488028142994 EEIQLPPP 8 Unmodified _EEIQLPPP_ 0 0 0 IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5423278808594 2 461.74765 921.480748 0.13103 6.0502E-05 0.11174 5.1596E-05 0.24277 0.0001121 461.74767074058235 86.767 0.9743 86.767 86.317 87.291 0 45 27 2 0 0 0 0.64227 1 17027 17027 19.439 0 1 2099200 10756 7326 6858 6862 11011 11011 0.01686676286283273 EEIRITKAY 9 Unmodified _EEIRITKAY_ 0 0 0 ENST00000308979.6_1_4:38800499-38805961:-|nuORF;ENST00000509754.5_1_4:38802433-38805961:-|nuORF;ENST00000505744.5_1_4:38792706-38805958:-|nuORF ENST00000308979.6_1_4:38800499-38805961:-|nuORF ENST00000308979.6_1_4:38800499-38805961:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21112060546875 3 374.876634 1121.60807 -0.35379 -0.00013263 0.36902 0.00013834 0.015227 5.7083E-06 374.8766701902009 56.624 0.62378 56.624 56.258 56.882 0 25 17 2 0 0 0 0.45972 1 10824 10824 8.1555 3.2585 1 2071000 10757 8631 6859 6863 11012 11012 0.05213397160468958 EEIRITKAY 9 Unmodified _EEIRITKAY_ 0 0 0 ENST00000308979.6_1_4:38800499-38805961:-|nuORF;ENST00000509754.5_1_4:38802433-38805961:-|nuORF;ENST00000505744.5_1_4:38792706-38805958:-|nuORF ENST00000308979.6_1_4:38800499-38805961:-|nuORF ENST00000308979.6_1_4:38800499-38805961:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21112060546875 3 374.876634 1121.60807 0.088998 3.3363E-05 0.22059 8.2692E-05 0.30958 0.00011606 374.87656800415436 59.872 0.592 56.558 56.209 56.801 -3.3139 39 16 3 0 0 0 0.10537 4 11147 11102;11147;11149;11164 43.982 13.278 1 1966600 10758 8631 6859 6863 11013;11014;11015;11016 11014 0.05213397160468958 EEIRITKAY 9 Unmodified _EEIRITKAY_ 0 0 0 ENST00000308979.6_1_4:38800499-38805961:-|nuORF;ENST00000509754.5_1_4:38802433-38805961:-|nuORF;ENST00000505744.5_1_4:38792706-38805958:-|nuORF ENST00000308979.6_1_4:38800499-38805961:-|nuORF ENST00000308979.6_1_4:38800499-38805961:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2169189453125 3 374.876634 1121.60807 -0.55351 -0.0002075 1.0573 0.00039636 0.50378 0.00018886 374.876800187671 59.812 0.52956 56.588 56.289 56.818 -3.2237 31 14 3 0 0 0 0.069179 4 11174 11138;11174;11178;11189 43.982 19.1 1 1637200 10759 8631 6859 6863 11017;11018;11019;11020 11018 0.05213397160468958 EEIRKTFNI 9 Unmodified _EEIRKTFNI_ 0 0 0 nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1 nc|ENSG00000113558|P63208-2|SKP1 nc|ENSG00000113558|P63208-2|SKP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.8421630859375 3 383.880267 1148.61897 -0.84032 -0.00032258 0.8096 0.00031079 -0.030722 -1.1794E-05 383.8805669657465 80.459 0.7674 76.771 76.411 77.178 -3.6879 56 21 3 0 0 0 0.35556 1 15276 15276 12.241 4.0851 1 8420000 10760 2749 6860 6864 11021 11021 0.05060799534749094 EEIRPDGY 8 Unmodified _EEIRPDGY_ 0 0 0 ENSG00000162344|ENST00000294312|FGF19 ENSG00000162344|ENST00000294312|FGF19 ENSG00000162344|ENST00000294312|FGF19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26593017578125 2 489.729989 977.445425 0.15938 7.8055E-05 -0.708 -0.00034673 -0.54862 -0.00026868 489.72964129574297 128.72 0.66687 124.09 123.8 124.47 -4.6292 26 18 2 0 0 0 0.95284 1 25388 25388 14.582 0 1 1873900 10761 5323 6861 6865 11022 11022 -0.0441998624153257 EEISACHDPEM 11 Unmodified _EEISACHDPEM_ 0 0 0 REV__tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1 REV__tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7764282226562 2 630.747195 1259.47984 NaN NaN NaN NaN NaN NaN NaN 158.47 1 153.68 153.18 154.18 -4.7952 0 0 0 0.22862 1 31513 31513 9.3831 0.78985 1 + 10762 25420 6862 6866 11023 11023 -0.13952274207258597 EEISGIVEV 9 Unmodified _EEISGIVEV_ 0 0 0 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 488.7689208984375 2 487.755672 973.496792 0.1849 9.0188E-05 -0.14703 -7.1717E-05 0.037869 1.8471E-05 487.7555320356798 128.23 1.4184 123.6 123.08 124.5 -4.6292 113 39 4 0 0 0 0.069179 1 25356 25356 47.987 36.238 1 101520000 10763 2382 6863 6867 11024 11024 0.008983377325307629 EEISGIVEV 9 Unmodified _EEISGIVEV_ 0 0 0 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 487.755672 973.496792 0.16406 8.002E-05 0.010847 5.2909E-06 0.17491 8.5311E-05 487.7556277992915 123.69 0.98964 123.69 123.27 124.26 0 0.024451 5.0957E-05 NaN 47.987 81 27 4 NaN NaN NaN NaN 0 NaN NaN 0 44361000 10764 2382 6863 6867 0.008983377325307629 EEISGIVEV 9 Unmodified _EEISGIVEV_ 0 0 0 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 487.755672 973.496792 0.27737 0.00013529 -0.11079 -5.404E-05 0.16657 8.1247E-05 487.75554711120776 128.53 1.5169 123.72 123.23 124.75 -4.817 0.048381 -6.7705E-05 NaN 47.987 125 42 5 NaN NaN NaN NaN 0 NaN NaN 0 97896000 10765 2382 6863 6867 0.008983377325307629 EEITEEQYY 9 Unmodified _EEITEEQYY_ 0 0 0 nc|ENSG00000172673|Q8N1K5-3|THEMIS;nc|ENSG00000172673|Q8N1K5-2|THEMIS;ENSG00000172673|ENST00000368248|THEMIS;nc|ENSG00000172673|Q8N1K5-4|THEMIS nc|ENSG00000172673|Q8N1K5-3|THEMIS nc|ENSG00000172673|Q8N1K5-3|THEMIS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2952880859375 2 602.256234 1202.49791 NaN NaN NaN NaN NaN NaN NaN 67.709 1 64.6 64.1 65.1 -3.1086 0 0 0 0.23508 1 13136 13136 7.9102 2.1783 1 10766 6235 6864 6868 11025 11025 -0.09523492689231716 EEITFYEY 8 Unmodified _EEITFYEY_ 0 0 0 ENSG00000188419|ENST00000357749|CHM ENSG00000188419|ENST00000357749|CHM ENSG00000188419|ENST00000357749|CHM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7744140625 2 547.239855 1092.46516 0.23094 0.00012638 -0.43776 -0.00023956 -0.20683 -0.00011318 547.2393986759251 140.01 0.7648 135.37 134.82 135.59 -4.6439 31 21 2 0 0 0 0.1475 1 27609 27609 33.593 29.31 1 2415900 10767 7169 6865 6869 11026 11026 -0.07737655021423961 EEITFYEY 8 Unmodified _EEITFYEY_ 0 0 0 ENSG00000188419|ENST00000357749|CHM ENSG00000188419|ENST00000357749|CHM ENSG00000188419|ENST00000357749|CHM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7666625976562 2 547.239855 1092.46516 0.33735 0.00018461 0.066658 3.6478E-05 0.40401 0.00022109 547.2399223525113 139.95 0.49107 135.11 134.81 135.3 -4.8492 21 13 2 0 0 0 0.74718 1 26975 26975 24.674 16.081 1 2287400 10768 7169 6865 6869 11027 11027 -0.07737655021423961 EEITSLWQG 9 Unmodified _EEITSLWQG_ 0 0 0 ENSG00000117899|ENST00000261758|MESD ENSG00000117899|ENST00000261758|MESD ENSG00000117899|ENST00000261758|MESD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2628173828125 2 531.758746 1061.50294 0.43273 0.00023011 0.19756 0.00010505 0.63029 0.00033516 531.7587560750223 113.93 0.94357 109.37 108.93 109.87 -4.555 76 26 4 0 0 0 0.60805 1 21906 21906 12.532 0.89125 1 37150000 10769 3008 6866 6870 11028 11028 -0.02535144035960002 EEITSTTDSVY 11 Unmodified _EEITSTTDSVY_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7802124023438 2 622.780073 1243.54559 NaN NaN NaN NaN NaN NaN NaN 68.068 1 68.068 67.568 68.568 0 0 0 0 0.22775 1 13159 13159 10.074 2.7847 1 10770 4961 6867 6871 11029 11029 -0.06643838489026166 EEIVWASFT 9 Unmodified _EEIVWASFT_ 0 0 0 REV__ENSG00000154734|ENST00000284984|ADAMTS1 REV__ENSG00000154734|ENST00000284984|ADAMTS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.261962890625 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 19.786 1 18.461 17.961 18.961 -1.3251 0 0 0 0.23508 1 3037 3037 10.824 0.75 1 + 10771 17192 6868 6872 11030 11030 -0.02425956030560883 EEIVWASFT 9 Unmodified _EEIVWASFT_ 0 0 0 REV__ENSG00000154734|ENST00000284984|ADAMTS1 REV__ENSG00000154734|ENST00000284984|ADAMTS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2770385742188 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 20.004 1 18.369 17.869 18.869 -1.6351 0 0 0 0.23508 1 3053 3053 10.824 0 1 + 10772 17192 6868 6872 11031 11031 -0.02425956030560883 EEIYAPKL 8 Unmodified _EEIYAPKL_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78717041015625 2 481.7633 961.512048 0.087735 4.2267E-05 0.012015 5.7886E-06 0.09975 4.8056E-05 481.7631427197302 97.794 1.0728 97.794 97.084 98.157 0 66 30 3 0 0 0 0.037002 1 19169 19169 92.822 18.399 1 8899800 10773 6399 6869 6873 11032 11032 0.029752493203773156 EEIYAPKL 8 Unmodified _EEIYAPKL_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7735900878906 2 481.7633 961.512048 0.062026 2.9882E-05 0.10635 5.1235E-05 0.16837 8.1116E-05 481.76332762818373 101.78 0.89601 97.593 97.166 98.062 -4.1861 57 25 3 0 0 0 0.0942 1 20031 20031 64.236 6.765 1 6470700 10774 6399 6869 6873 11033 11033 0.029752493203773156 EEIYAPKL 8 Unmodified _EEIYAPKL_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23773193359375 2 481.7633 961.512048 0.36613 0.00017639 -0.084919 -4.0911E-05 0.28122 0.00013548 481.7631476124782 101.79 0.89294 97.467 97.152 98.045 -4.3208 61 25 3 0 0 0 0.18066 1 19519 19519 64.236 6.765 1 8144900 10775 6399 6869 6873 11034 11034 0.029752493203773156 EEIYAPKL 8 Unmodified _EEIYAPKL_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77374267578125 2 481.7633 961.512048 0.35953 0.00017321 -0.26394 -0.00012716 0.095596 4.6055E-05 481.76308103199614 101.54 1.1508 97.543 97.02 98.171 -4 71 32 3 0 0 0 0.68128 1 19630 19630 16.942 0 1 6669000 10776 6399 6869 6873 11035 11035 0.029752493203773156 EEIYNLKDRLT 11 Unmodified _EEIYNLKDRLT_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2485656738281 3 465.248908 1392.72489 -0.40481 -0.00018834 0.21619 0.00010058 -0.18862 -8.7753E-05 465.24894212397754 106.18 0.59434 101.91 101.66 102.25 -4.2638 28 16 2 0 0 0 0.78057 1 20910 20910 6.2344 0.36622 1 1926200 10777 1266 6870 6874 11036 11036 0.044240905895549076 EEIYNLKDRLT 11 Unmodified _EEIYNLKDRLT_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2490234375 3 465.248908 1392.72489 -0.0078886 -3.6702E-06 -0.29247 -0.00013607 -0.30036 -0.00013974 465.24871159652224 106.37 0.62028 102 101.65 102.27 -4.3764 29 17 2 0 0 0 0.78057 1 20401 20401 6.2344 1.1868 1 2528900 10778 1266 6870 6874 11037 11037 0.044240905895549076 EEIYPPEVA 9 Unmodified _EEIYPPEVA_ 0 0 0 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6875 2 523.755672 1045.49679 -0.22276 -0.00011667 -0.75799 -0.000397 -0.98075 -0.00051367 523.7550408916587 102.67 0.60521 98.486 98.13 98.736 -4.1861 29 16 2 0 0 0 0.58699 1 20200 20200 32.305 17.467 1 1520800 10779 4606 6871 6875 11038 11038 -0.024136622674632235 EEIYPPEVA 9 Unmodified _EEIYPPEVA_ 0 0 0 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.677734375 2 523.755672 1045.49679 0.58495 0.00030637 -1.465 -0.0007673 -0.88005 -0.00046093 523.7549927683561 102.52 0.91631 98.495 98.079 98.995 -4.0212 39 25 2 0 0 0 0.42289 1 19655 19655 39.957 20.7 1 1889500 10780 4606 6871 6875 11039 11039 -0.024136622674632235 EEIYPPEVA 9 Unmodified _EEIYPPEVA_ 0 0 0 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.755672 1045.49679 -0.27864 -0.00014594 0.06471 3.3892E-05 -0.21393 -0.00011205 523.7556323511488 102.99 0.66119 98.673 98.254 98.915 -4.3208 0.19264 0.00067045 NaN 39.957 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1470100 10781 4606 6871 6875 -0.024136622674632235 EEIYRSLNQ 9 Unmodified _EEIYRSLNQ_ 0 0 0 ENSG00000170509|ENST00000328546|HSD17B13 ENSG00000170509|ENST00000328546|HSD17B13 ENSG00000170509|ENST00000328546|HSD17B13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3156127929688 2 576.288202 1150.56185 NaN NaN NaN NaN NaN NaN NaN 66.677 1 66.677 66.177 67.177 0 0 0 0 0.21844 1 12881 12881 18.146 2.2992 1 10782 6075 6872 6876 11040 11040 -0.0074066774163839 EEKAALEEY 9 Unmodified _EEKAALEEY_ 0 0 0 ENSG00000142621|ENST00000688493|FHAD1 ENSG00000142621|ENST00000688493|FHAD1 ENSG00000142621|ENST00000688493|FHAD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.265869140625 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 44.851 1 42.085 41.585 42.585 -2.7661 0 0 0 0.21065 1 8131 8131 20.454 1.1966 1 10783 4433 6873 6877 11041 11041 -0.03950867618414122 EEKAALEEY 9 Unmodified _EEKAALEEY_ 0 0 0 ENSG00000142621|ENST00000688493|FHAD1 ENSG00000142621|ENST00000688493|FHAD1 ENSG00000142621|ENST00000688493|FHAD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.284912109375 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 44.965 1 42.099 41.599 42.599 -2.8653 0 0 0 0.22251 1 8154 8154 16.942 2.104 1 10784 4433 6873 6877 11042 11042 -0.03950867618414122 EEKADPRA 8 Unmodified _EEKADPRA_ 0 0 0 REV__ENSG00000184221|ENST00000382348|OLIG1 REV__ENSG00000184221|ENST00000382348|OLIG1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2294616699219 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 109.43 1 105.05 104.55 105.55 -4.3776 0 0 0 0.23538 1 21566 21566 0.12286 0 1 + 10785 18885 6874 6878 11043 11043 -0.014885665216752386 EEKAIGVGD 9 Unmodified _EEKAIGVGD_ 0 0 0 REV__tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1 REV__tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2349853515625 2 459.232364 916.450176 0.17054 7.8317E-05 -0.20032 -9.1996E-05 -0.029786 -1.3679E-05 459.2320525477562 17.397 0.34707 17.397 17.242 17.589 0 16 9 3 0 0 0 0.40602 1 2750 2750 25.399 0 1 500300 + 10786 24916 6875 6879 11044 11044 -0.011391020987616685 EEKAIGVGD 9 Unmodified _EEKAIGVGD_ 0 0 0 REV__tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1 REV__tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.232364 916.450176 -0.12389 -5.6894E-05 -0.34317 -0.00015759 -0.46706 -0.00021449 459.2320673212073 18.562 0.38265 17.251 17.037 17.42 -1.3109 -0.073206 -9.2269E-05 NaN 25.399 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 458730 + 10787 24916 6875 6879 -0.011391020987616685 EEKAKDRIQYY 11 Unmodified _EEKAKDRIQYY_ 0 0 0 nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6 nc|ENSG00000023041|Q9H6R6-2|ZDHHC6 nc|ENSG00000023041|Q9H6R6-2|ZDHHC6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2414855957031 3 481.580658 1441.72014 0.22706 0.00010935 -0.17576 -8.4643E-05 0.051301 2.4706E-05 481.58057165117646 98.462 0.55749 94.193 93.884 94.441 -4.2692 21 15 2 0 0 0 0.96157 1 18763 18763 2.6312 2.2646 1 1590200 10788 1130 6876 6880 11045 11045 0.01695206446811426 EEKAKLQSY 9 Unmodified _EEKAKLQSY_ 0 0 0 REV__nc|ENSG00000127603|O94854|MACF1;REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7713623046875 2 548.287671 1094.56079 0.20817 0.00011414 -0.17693 -9.7009E-05 0.031243 1.713E-05 548.2874539332367 63.858 0.38229 60.442 60.286 60.669 -3.4158 23 10 3 0 0 0 0.8319 1 11981 11981 7.9102 5.175 1 2637700 + 10789 15894;24029 6877 6881 11046 11046 0.01729117889499321 EEKALIETY 9 Unmodified _EEKALIETY_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7832641601562 2 548.282054 1094.54956 0.20615 0.00011303 -2.2414 -0.0012289 -2.0353 -0.0011159 548.2810211182133 80.555 1.635 77.045 76.614 78.249 -3.5102 91 46 3 0 0 0 0.026883 1 15745 15745 106.94 59.191 1 6215300 10790 4113 6878 6882 11047 11047 0.006062957953417936 EEKAVEKF 8 Unmodified _EEKAVEKF_ 0 0 0 nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF nc|ENSG00000198431|Q16881-7|TXNRD1 nc|ENSG00000198431|Q16881-7|TXNRD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2589416503906 2 490.258382 978.502212 0.89568 0.00043912 -0.58959 -0.00028905 0.30609 0.00015007 490.25814298826185 28.394 0.273 26.438 26.33 26.603 -1.9561 9 7 2 0 0 0 0.5707 1 5079 5079 24.021 7.0783 1 292850 10791 7453 6879 6883 11048 11048 0.012100613149982564 EEKAVEKF 8 Unmodified _EEKAVEKF_ 0 0 0 nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF nc|ENSG00000198431|Q16881-7|TXNRD1 nc|ENSG00000198431|Q16881-7|TXNRD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25628662109375 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 28.177 1 26.422 25.922 26.922 -1.7552 0 0 0 0.20135 1 4747 4747 24.021 7.0783 1 10792 7453 6879 6883 11049 11049 0.012100613149982564 EEKAVEKF 8 Unmodified _EEKAVEKF_ 0 0 0 nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF nc|ENSG00000198431|Q16881-7|TXNRD1 nc|ENSG00000198431|Q16881-7|TXNRD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2557067871094 2 490.258382 978.502212 0.077925 3.8203E-05 -0.50286 -0.00024653 -0.42494 -0.00020833 490.2580321429046 28.378 0.24554 26.381 26.273 26.519 -1.9962 9 6 2 0 0 0 0.59076 1 4789 4789 22.736 4.6013 1 265170 10793 7453 6879 6883 11050 11050 0.012100613149982564 EEKCLPVAGP 10 Unmodified _EEKCLPVAGP_ 0 0 0 REV__nc|ENSG00000128923|Q8NBR6-2|MINDY2 REV__nc|ENSG00000128923|Q8NBR6-2|MINDY2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2805786132812 2 521.765517 1041.51648 -0.19828 -0.00010346 0.81369 0.00042456 0.61541 0.0003211 521.7659264757125 64.331 0.79911 61.334 60.91 61.709 -2.9975 31 22 2 0 0 0 0.57735 1 12404 12404 20.454 2.3073 1 1615000 + 10794 15941 6880 6884 11051 11051 -0.00261609528365625 EEKDKLFTA 9 Unmodified _EEKDKLFTA_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;ENST00000561258.1_1_15:62276000-62283926:-|nuORF;VPS13C|p.S1021Hfs*3|1|0.08|ENSG00000129003|chr15:61964852-61964852|A/-|frameshift_variant;VPS13C|p.N1066Ifs*25|2|0.27|ENSG00000129003|chr15:61964716-61964716|T/-|frameshift_variant;VPS13C|p.D1169Ifs*15|1|0.38|ENSG00000129003|chr15:61962469-61962469|C/-|frameshift_variant nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2802734375 2 540.782222 1079.54989 -0.76364 -0.00041296 -2.1934 -0.0011861 -2.957 -0.0015991 540.7813042371862 20.563 0.24519 18.842 18.73 18.975 -1.7211 11 6 2 0 0 0 0.64382 1 3168 3168 10.074 1.3285 1 538270 10795 3551 6881 6885 11052 11052 0.013297155152031337 EEKDSETSY 9 Unmodified _EEKDSETSY_ 0 0 0 ENSG00000188958|ENST00000340524|UTS2B ENSG00000188958|ENST00000340524|UTS2B ENSG00000188958|ENST00000340524|UTS2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7824096679688 2 544.224933 1086.43531 0.55786 0.0003036 0.31165 0.00016961 0.86951 0.00047321 544.2247545738907 49.735 0.31295 49.735 49.547 49.86 0 13 8 2 0 0 0 0.8319 1 9406 9406 7.9102 0 1 1717200 10796 7208 6882 6886 11053 11053 -0.10444638757394387 EEKEFISY 8 Unmodified _EEKEFISY_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6792602539062 2 522.747847 1043.48114 0.52613 0.00027503 -0.50368 -0.0002633 0.022448 1.1735E-05 522.7475498916741 81.105 1.2645 81.105 80.625 81.889 0 113 35 5 0 0 0 0.069961 1 15790 15790 69.105 29.148 1 142680000 10797 899 6883 6887 11054 11054 -0.03885948784500215 EEKEFISY 8 Unmodified _EEKEFISY_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6776123046875 2 522.747847 1043.48114 -0.44469 -0.00023246 0.34 0.00017774 -0.10469 -5.4724E-05 522.7479825898484 85.074 1.2844 81.165 80.664 81.948 -3.9093 127 36 5 0 0 0 0.077776 1 16153 16153 81.89 39.796 1 113810000 10798 899 6883 6887 11055 11055 -0.03885948784500215 EEKEFISY 8 Unmodified _EEKEFISY_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.678955078125 2 522.747847 1043.48114 0.054623 2.8554E-05 -0.13493 -7.0534E-05 -0.080306 -4.198E-05 522.7476932653808 84.81 1.3428 81.098 80.629 81.972 -3.7117 139 38 6 0 0 0 0.075417 1 16240 16240 71.922 23.576 1 136300000 10799 899 6883 6887 11056 11056 -0.03885948784500215 EEKEKESY 8 Unmodified _EEKEKESY_ 0 0 0 REV__UNC79|p.K1493Sfs*12|1|0.52|ENSG00000133958|chr14:93621704-93621704|A/-|frameshift_variant REV__UNC79|p.K1493Sfs*12|1|0.52|ENSG00000133958|chr14:93621704-93621704|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 521.118896484375 2 521.240386 1040.46622 -0.6024 -0.000314 0.31681 0.00016513 -0.28559 -0.00014886 521.240773508243 35.897 0.28043 33.503 33.276 33.557 -2.3938 11 7 2 0 0 0 1.0095 1 6602 6602 10.183 1.5901 1 685820 + 10800 16183 6884 6888 11057 11057 -0.05239440652508165 EEKELREFYE 10 Unmodified _EEKELREFYE_ 0 0 0 REV__nc|ENSG00000108946|P10644-2|PRKAR1A REV__nc|ENSG00000108946|P10644-2|PRKAR1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2380676269531 3 457.885747 1370.63541 NaN NaN NaN NaN NaN NaN NaN 51.277 1 48.232 47.732 48.732 -3.0453 0 0 0 0.22588 1 9413 9413 6.1918 0 1 + 10801 15146 6885 6889 11058 11058 -0.03508164089817001 EEKELRKF 8 Unmodified _EEKELRKF_ 0 0 0 ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75 ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENST00000436347.5_1_2:190313199-190340140:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20098876953125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 124.58 1 119.81 119.31 120.31 -4.7681 0 0 0 0.21486 1 23924 23924 7.2892 0 1 10802 2852 6886 6890 11059 11059 0.046171279889904326 EEKELRKF 8 Unmodified _EEKELRKF_ 0 0 0 ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75 ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENST00000436347.5_1_2:190313199-190340140:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 92.702 1 88.893 88.393 89.393 -3.8083 0 0 0 0.21486 1 17765 17765 3.9444 0 1 10803 2852 6886 6890 11060 11060 0.046171279889904326 EEKEPSIFN 9 Unmodified _EEKEPSIFN_ 0 0 0 REV__BRSK2|p.L528P|1|0.28|ENSG00000174672|chr11:1454523-1454523|T/C|missense_variant REV__BRSK2|p.L528P|1|0.28|ENSG00000174672|chr11:1454523-1454523|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7791748046875 2 546.764029 1091.5135 0.21662 0.00011844 0.06322 3.4567E-05 0.27984 0.000153 546.7639861552817 64.918 1.4681 61.871 61.276 62.744 -3.047 133 42 4 0 0 0 0.48644 1 12483 12483 20.454 0 1 36253000 + 10804 13210 6887 6891 11061 11061 -0.02859161381525155 EEKEQLEAA 9 Unmodified _EEKEQLEAA_ 0 0 0 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4;PLEKHA4|p.R615Pfs*17|1|0.31|ENSG00000105559|chr19:48841210-48841211|-/G|frameshift_variant;ENSG00000105559|ENST00000263265|PLEKHA4 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6781005859375 2 523.753661 1045.49277 0.20322 0.00010644 0.69394 0.00036345 0.89716 0.00046989 523.7535437787132 23.147 0.41091 23.147 22.927 23.338 0 21 11 3 0 0 0 0.19311 1 3942 3942 37.974 1.847 1 1655100 10805 2319 6888 6892 11062 11062 -0.02815751761181673 EEKEVKAF 8 Unmodified _EEKEVKAF_ 0 0 0 REV__ENST00000371482.5_2_9:140343848-140347544:-|nuORF REV__ENST00000371482.5_2_9:140343848-140347544:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2586364746094 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 58.779 1 55.527 55.027 56.027 -3.2517 0 0 0 0.22847 1 10926 10926 0.68139 0 1 + 10806 17801 6889 6893 11063 11063 0.012100613149982564 EEKEVKAF 8 Unmodified _EEKEVKAF_ 0 0 0 REV__ENST00000371482.5_2_9:140343848-140347544:-|nuORF REV__ENST00000371482.5_2_9:140343848-140347544:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26513671875 2 490.258382 978.502212 -0.13775 -6.7532E-05 -1.19 -0.00058342 -1.3278 -0.00065095 490.2580658178962 58.891 0.14414 55.685 55.609 55.753 -3.2052 6 3 2 0 0 0 8448 1 10990 10990 0.25148 0 1 292910 + 10807 17801 6889 6893 11064 11064 0.012100613149982564 EEKFLHIVH 9 Unmodified _EEKFLHIVH_ 0 0 0 REV__nc|ENSG00000188266|A2RU49-3|HYKK REV__nc|ENSG00000188266|A2RU49-3|HYKK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3341674804688 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 90.673 1 86.895 86.395 87.395 -3.7779 0 0 0 0.23411 1 17351 17351 13.508 4.1604 1 + 10808 19139 6890 6894 11065 11065 0.044211207429498245 EEKFLTKIIEE 11 Unmodified _EEKFLTKIIEE_ 0 0 0 REV__ENST00000424919.1_1_X:150162237-150162561:+|nuORF REV__ENST00000424919.1_1_X:150162237-150162561:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23370361328125 3 460.253659 1377.73915 0.060468 2.7831E-05 0.87504 0.00040274 0.93551 0.00043057 460.588307193155 117.2 0.83487 112.71 112.21 113.05 -4.486 48 23 3 0 0 0 0.64428 2 23133 23113;23133 15.538 3.9071 1 3003400 + 10809 21550 6891 6895 11066;11067 11067 0.06538743017858906 EEKFLTKIIEE 11 Unmodified _EEKFLTKIIEE_ 0 0 0 REV__ENST00000424919.1_1_X:150162237-150162561:+|nuORF REV__ENST00000424919.1_1_X:150162237-150162561:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2454528808594 3 460.253659 1377.73915 0.31301 0.00014406 0.78624 0.00036187 1.0993 0.00050594 460.25399586630243 117.09 0.7581 112.51 112.26 113.02 -4.5815 53 21 4 0 0 0 0.7859 1 22530 22530 5.5233 1.6774 1 2966400 + 10810 21550 6891 6895 11068 11068 0.06538743017858906 EEKGKLKSY 9 Unmodified _EEKGKLKSY_ 0 0 0 REV__ENSG00000187105|ENST00000553558|HEATR4 REV__ENSG00000187105|ENST00000553558|HEATR4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2763061523438 2 541.298039 1080.58152 NaN NaN NaN NaN NaN NaN NaN 73.474 1 69.798 69.298 70.298 -3.6764 0 0 0 0.20628 1 13884 13884 21.747 9.506 1 + 10811 19076 6892 6896 11069 11069 0.04445708269122406 EEKGKLKSY 9 Unmodified _EEKGKLKSY_ 0 0 0 REV__ENSG00000187105|ENST00000553558|HEATR4 REV__ENSG00000187105|ENST00000553558|HEATR4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.260009765625 2 541.298039 1080.58152 NaN NaN NaN NaN NaN NaN NaN 100.06 1 96.07 95.57 96.57 -3.9895 0 0 0 0.23508 1 19220 19220 12.532 3.9383 1 + 10812 19076 6892 6896 11070 11070 0.04445708269122406 EEKGQRMSSQ 10 Unmodified _EEKGQRMSSQ_ 0 0 0 nc|ENSG00000137868|Q9BX79-5|STRA6 nc|ENSG00000137868|Q9BX79-5|STRA6 nc|ENSG00000137868|Q9BX79-5|STRA6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.277099609375 2 590.274769 1178.53499 NaN NaN NaN NaN NaN NaN NaN 45.778 1 45.778 45.278 46.278 0 0 0 0 0.22588 1 8612 8612 12.241 4.3305 1 10813 12350 6893 6897 11071 11071 -0.04714099624447954 EEKHGHFY 8 Unmodified _EEKHGHFY_ 0 0 0 REV__NR2E1|p.R108H|1|0.05|ENSG00000112333|chr6:108176566-108176566|G/A|missense_variant REV__NR2E1|p.R108H|1|0.05|ENSG00000112333|chr6:108176566-108176566|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6776733398438 2 523.738148 1045.46174 NaN NaN NaN NaN NaN NaN NaN 52.102 1 49.051 48.551 49.551 -3.0517 0 0 0 0.21452 1 9611 9611 13.508 0.97634 1 + 10814 24381 6894 6898 11072 11072 -0.059168602847421425 EEKHGRFY 8 Unmodified _EEKHGRFY_ 0 0 0 REV__NR2E1|p.T366Nfs*19|1|0.1|ENSG00000112333|chr6:108187394-108187395|-/A|frameshift_variant REV__NR2E1|p.T366Nfs*19|1|0.1|ENSG00000112333|chr6:108187394-108187395|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2787475585938 2 533.259248 1064.50394 NaN NaN NaN NaN NaN NaN NaN 131.75 1 126.95 126.45 127.45 -4.799 0 0 0 0.21486 1 25363 25363 10.183 1.5901 1 + 10815 15294 6895 6899 11073 11073 -0.025728848763719725 EEKIDEDYY 9 Unmodified _EEKIDEDYY_ 0 0 0 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2985229492188 2 602.256234 1202.49791 NaN NaN NaN NaN NaN NaN NaN 60.19 1 56.876 56.376 57.376 -3.3139 0 0 0 0.23508 1 11206 11206 4.756 0 1 10816 26065 6896 6900 11074 11074 -0.09523492689231716 EEKIGTERA 9 Unmodified _EEKIGTERA_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.83795166015625 3 344.848856 1031.52474 -0.48853 -0.00016847 0.30451 0.00010501 -0.18403 -6.3461E-05 344.8489576230726 17.534 0.34406 16.223 15.995 16.339 -1.3109 26 9 4 0 0 0 0.058839 1 2803 2803 67.838 37.998 1 2681600 10817 3296 6897 6901 11075 11075 0.010236607126444142 EEKIGTERA 9 Unmodified _EEKIGTERA_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 344.848856 1031.52474 -0.42599 -0.0001469 0.47013 0.00016212 0.044137 1.5221E-05 344.84897033656904 16.391 0.30878 16.391 16.199 16.507 0 0.084187 9.0133E-05 NaN 67.838 21 8 3 NaN NaN NaN NaN 0 NaN NaN 0 4074000 10818 3296 6897 6901 0.010236607126444142 EEKIIRKHEEM 11 Unmodified _EEKIIRKHEEM_ 0 0 0 REV__ENSG00000138587|ENST00000260453|MNS1 REV__ENSG00000138587|ENST00000260453|MNS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23773193359375 3 481.253776 1440.7395 NaN NaN NaN NaN NaN NaN NaN 101.95 1 97.633 97.133 98.133 -4.3208 0 0 0 0.22632 1 19516 19516 0.0059557 0 1 + 10819 16465 6898 6902 11076 11076 0.03675839466063735 EEKIPNSY 8 Unmodified _EEKIPNSY_ 0 0 0 REV__U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant;REV__nc|ENSG00000163714|O15042-3|U2SURP REV__U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.266845703125 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 58.612 1 55.361 54.861 55.861 -3.2517 0 0 0 0.19342 1 10894 10894 26.884 2.2098 1 + 10820 17605;24131 6899 6903 11077 11077 -0.024268155817139814 EEKIYNWI 8 Unmodified _EEKIYNWI_ 0 0 0 tr|U7SVE8|U7SVE8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01232PE=4SV=1 tr|U7SVE8|U7SVE8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01232PE=4SV=1 tr|U7SVE8|U7SVE8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01232PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7767944335938 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 67.36 1 63.863 63.363 64.363 -3.4965 0 0 0 0.21452 1 12636 12636 13.508 0.46542 1 10821 26236 6900 6904 11078 11078 0.0013803672338781325 EEKKAMVPY 9 Unmodified _EEKKAMVPY_ 0 0 0 REV__SLC6A13|p.E22A|1|0.03|ENSG00000010379|chr12:259988-259988|T/G|missense_variant REV__SLC6A13|p.E22A|1|0.03|ENSG00000010379|chr12:259988-259988|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.781005859375 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 30.122 1 28.048 27.548 28.548 -2.0743 0 0 0 0.23508 1 5145 5145 5.2307 0 1 + 10822 24650 6901 6905 11079 11079 0.004749635057351043 EEKKEWIQI 9 Unmodified _EEKKEWIQI_ 0 0 0 ENSG00000127084|ENST00000375482|FGD3;nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3 ENSG00000127084|ENST00000375482|FGD3 ENSG00000127084|ENST00000375482|FGD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2952880859375 2 601.824421 1201.63429 0.77698 0.00046761 -0.36809 -0.00022153 0.40889 0.00024608 601.8241156329808 104.95 0.53102 100.73 100.44 100.97 -4.2183 26 14 2 0 0 0 0.022938 2 20655 20611;20655 89.401 33.224 1 2436500 10823 3462 6902 6906 11080;11081 11081 0.041536663319675426 EEKKEWIQI 9 Unmodified _EEKKEWIQI_ 0 0 0 ENSG00000127084|ENST00000375482|FGD3;nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3 ENSG00000127084|ENST00000375482|FGD3 ENSG00000127084|ENST00000375482|FGD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2941284179688 2 601.824421 1201.63429 0.48119 0.00028959 0.0026486 1.594E-06 0.48384 0.00029119 601.824443637369 104.87 0.54782 100.53 100.25 100.8 -4.346 27 15 2 0 0 0 0.022938 2 20145 20095;20145 89.401 39.846 1 3354500 10824 3462 6902 6906 11082;11083 11083 0.041536663319675426 EEKKEWIQI 9 Unmodified _EEKKEWIQI_ 0 0 0 ENSG00000127084|ENST00000375482|FGD3;nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3 ENSG00000127084|ENST00000375482|FGD3 ENSG00000127084|ENST00000375482|FGD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2887573242188 2 601.824421 1201.63429 0.82647 0.00049739 -0.22626 -0.00013617 0.60021 0.00036122 601.8241163761907 104.69 0.66978 100.64 100.31 100.97 -4.0543 37 18 3 0 0 0 0.010502 2 20153 20153;20168 103.42 57.68 1 2394400 10825 3462 6902 6906 11084;11085 11084 0.041536663319675426 EEKKNRDY 8 Unmodified _EEKKNRDY_ 0 0 0 REV__tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1 REV__tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2737426757812 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 118.4 1 118.4 117.9 118.9 0 0 0 0 0.21452 1 23320 23320 13.508 1.8676 1 + 10826 25132 6903 6907 11086 11086 -0.017052234301445424 EEKKPHVKK 9 Unmodified _EEKKPHVKK_ 0 0 0 ENSG00000152284|ENST00000282111|TCF7L1 ENSG00000152284|ENST00000282111|TCF7L1 ENSG00000152284|ENST00000282111|TCF7L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20977783203125 3 374.892507 1121.65569 -0.12167 -4.5613E-05 -0.34839 -0.00013061 -0.47006 -0.00017622 374.89241636138775 28.743 0.35344 28.743 28.561 28.914 0 16 9 2 0 0 0 0.37458 1 5081 5081 0.029283 0 1 1278200 10827 4914 6904 6908 11087 11087 0.09973096151315985 EEKKRIRKKLR 11 Unmodified _EEKKRIRKKLR_ 0 0 0 nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;ENST00000509478.5_1_4:89649686-89652602:-|nuORF nc|ENSG00000138640|O94988-6|FAM13A nc|ENSG00000138640|O94988-6|FAM13A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.372314453125 2 742.480808 1482.94706 NaN NaN NaN NaN NaN NaN NaN 169.7 1 164.83 164.33 165.33 -4.873 0 0 0 0.23698 1 33533 33533 0.30703 0 1 10828 4190 6905 6909 11088 11088 0.2249083451624756 EEKKRIRKKLR 11 Unmodified _EEKKRIRKKLR_ 0 0 0 nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;ENST00000509478.5_1_4:89649686-89652602:-|nuORF nc|ENSG00000138640|O94988-6|FAM13A nc|ENSG00000138640|O94988-6|FAM13A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3953247070312 2 742.480808 1482.94706 NaN NaN NaN NaN NaN NaN NaN 169.73 1 164.86 164.36 165.36 -4.873 0 0 0 0.23698 1 33543 33543 0.35063 0.043601 1 10829 4190 6905 6909 11089 11089 0.2249083451624756 EEKKRLFK 8 Unmodified _EEKKRLFK_ 0 0 0 REV__ENST00000521946.5_1_8:70505207-70554528:+|nuORF REV__ENST00000521946.5_1_8:70505207-70554528:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2050476074219 3 359.885353 1076.63423 -0.32855 -0.00011824 0.24206 8.7113E-05 -0.08649 -3.1126E-05 359.8853618472358 16.318 0.17105 16.318 16.234 16.405 0 7 4 2 0 0 0 0.89998 1 2546 2546 0 0 1 299740 + 10830 16400 6906 6910 11090 11090 0.09897711122607689 EEKKTPSKP 9 Unmodified _EEKKTPSKP_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2584838867188 2 522.290214 1042.56587 -0.68244 -0.00035643 1.5124 0.00078992 0.82997 0.00043349 522.290739944422 24.544 0.58174 23.009 22.751 23.332 -1.5342 25 16 2 0 0 0 0.65387 1 4037 4037 9.3831 0 1 940050 10831 1480 6907 6911 11091 11091 0.046294217521108294 EEKKTPSKP 9 Unmodified _EEKKTPSKP_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2810668945312 2 522.290214 1042.56587 -0.16595 -8.6675E-05 0.93612 0.00048893 0.77017 0.00040225 522.2904410558083 24.732 0.54657 22.878 22.71 23.256 -1.8534 24 15 2 0 0 0 0.46882 1 4085 4085 21.537 0 1 659740 10832 1480 6907 6911 11092 11092 0.046294217521108294 EEKKVRSLY 9 Unmodified _EEKKVRSLY_ 0 0 0 REV__nc|ENSG00000138162|O95359-2|TACC2 REV__nc|ENSG00000138162|O95359-2|TACC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.327880859375 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 120.51 1 120.51 120.01 121.01 0 0 0 0 0.19691 1 23756 23756 0.073264 0.043981 1 + 10833 16444 6908 6912 11093 11093 0.06533086051808823 EEKKVRSLY 9 Unmodified _EEKKVRSLY_ 0 0 0 REV__nc|ENSG00000138162|O95359-2|TACC2 REV__nc|ENSG00000138162|O95359-2|TACC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3306274414062 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 125.56 1 120.91 120.41 121.41 -4.6495 0 0 0 0.19656 1 24158 24158 0.12781 0 1 + 10834 16444 6908 6912 11094 11094 0.06533086051808823 EEKLAGKKSP 10 Unmodified _EEKLAGKKSP_ 0 0 0 REV__U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant;REV__nc|ENSG00000163714|O15042-3|U2SURP REV__U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.805908203125 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 157.62 1 157.62 157.12 158.12 0 0 0 0 2.8426 1 31639 31639 1.0651 0 1 + 10835 17605;24131 6909 6913 11095 11095 0.06869397160471635 EEKLEHETA 9 Unmodified _EEKLEHETA_ 0 0 0 ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7752075195312 2 543.259111 1084.50367 0.23998 0.00013037 0.27716 0.00015057 0.51714 0.00028094 543.2591439082182 15.621 0.34163 15.621 15.438 15.779 0 19 9 3 0 0 0 0.026483 1 2376 2376 103.35 72.717 1 2236600 10836 3654 6910 6914 11096 11096 -0.0352034938689485 EEKLEHETA 9 Unmodified _EEKLEHETA_ 0 0 0 ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7864990234375 2 543.259111 1084.50367 -0.13478 -7.3222E-05 0.48046 0.00026101 0.34567 0.00018779 543.2593666905075 16.656 0.28244 15.44 15.285 15.567 -1.2159 11 7 2 0 0 0 0.00044796 1 2628 2628 133.05 93.102 1 1885600 10837 3654 6910 6914 11097 11097 -0.0352034938689485 EEKLEHETA 9 Unmodified _EEKLEHETA_ 0 0 0 ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7750854492188 2 543.259111 1084.50367 -0.47467 -0.00025787 0.65264 0.00035455 0.17796 9.6681E-05 543.2593680322092 16.71 0.20679 15.438 15.28 15.487 -1.2722 9 5 2 0 0 0 0.76271 1 2402 2402 14.838 1.7958 1 1002900 10838 3654 6910 6914 11098 11098 -0.0352034938689485 EEKLELAH 8 Unmodified _EEKLELAH_ 0 0 0 REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1706848144531 3 323.50643 967.497461 -0.27584 -8.9237E-05 0.1619 5.2376E-05 -0.11394 -3.6861E-05 323.5064552506184 33.469 0.5221 31.151 30.869 31.391 -2.3175 25 14 2 0 0 0 8448 1 6128 6128 88.954 0 1 2708600 + 10839 25470 6911 6915 11099 11099 0.012411771722327103 EEKLELAH 8 Unmodified _EEKLELAH_ 0 0 0 REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 323.50643 967.497461 -0.44613 -0.00014433 0.37824 0.00012236 -0.067894 -2.1964E-05 323.5064890155423 31.324 0.42241 31.324 31.108 31.53 0 0.097937 0.00025109 NaN 88.954 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1714000 + 10840 25470 6911 6915 0.012411771722327103 EEKLELAH 8 Unmodified _EEKLELAH_ 0 0 0 REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 323.50643 967.497461 -0.27584 -8.9237E-05 0.1619 5.2376E-05 -0.11394 -3.6861E-05 323.5064552506184 33.469 0.5221 31.151 30.869 31.391 -2.3175 -0.07468 4.1126E-05 NaN 88.954 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2708600 + 10841 25470 6911 6915 0.012411771722327103 EEKLELAH 8 Unmodified _EEKLELAH_ 0 0 0 REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 323.50643 967.497461 0.22927 7.4172E-05 -0.34728 -0.00011235 -0.118 -3.8175E-05 323.50625495102963 33.363 0.52459 31.216 30.972 31.496 -2.1468 -0.009931 -0.00045304 NaN 88.954 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3685700 + 10842 25470 6911 6915 0.012411771722327103 EEKLELAH 8 Unmodified _EEKLELAH_ 0 0 0 REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 323.50643 967.497461 -0.27888 -9.0221E-05 0.28401 9.188E-05 0.0051281 1.659E-06 323.5064691876915 33.428 0.44723 31.212 30.976 31.423 -2.2158 -0.013326 0.00015964 NaN 88.954 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2715500 + 10843 25470 6911 6915 0.012411771722327103 EEKLFAAPG 9 Unmodified _EEKLFAAPG_ 0 0 0 ENST00000236412.11_1_1:28157449-28157560:+|nuORF ENST00000236412.11_1_1:28157449-28157560:+|nuORF ENST00000236412.11_1_1:28157449-28157560:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2549743652344 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 81.453 1 77.765 77.265 78.265 -3.6879 0 0 0 0.23508 1 15521 15521 11.64 1.4569 1 10844 8169 6912 6916 11100 11100 0.00982078660570096 EEKLFQVH 8 Unmodified _EEKLFQVH_ 0 0 0 nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.5186462402344 3 343.850308 1028.5291 -0.21093 -7.253E-05 -0.18757 -6.4498E-05 -0.39851 -0.00013703 343.8502132489874 63.003 0.61487 60.006 59.671 60.285 -2.9975 28 17 3 0 0 0 8448 1 12171 12171 32.898 19.363 1 1292100 10845 4824 6913 6917 11101 11101 0.01597169926208153 EEKLFQVH 8 Unmodified _EEKLFQVH_ 0 0 0 nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 343.850308 1028.5291 -0.65521 -0.00022529 0.63307 0.00021768 -0.022139 -7.6127E-06 343.85037820760556 60.236 0.38706 60.236 60.065 60.452 0 0.12663 0.00040194 NaN 32.898 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 838790 10846 4824 6913 6917 0.01597169926208153 EEKLFQVH 8 Unmodified _EEKLFQVH_ 0 0 0 nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 343.850308 1028.5291 -0.43615 -0.00014997 0.38088 0.00013097 -0.05527 -1.9005E-05 343.85031057969405 63.343 0.45154 60.087 59.811 60.263 -3.2567 -0.022925 0.0001418 NaN 32.898 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1144500 10847 4824 6913 6917 0.01597169926208153 EEKLQILTA 9 Unmodified _EEKLQILTA_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant ENSG00000009954|ENST00000339594|BAZ1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2691040039062 2 522.800414 1043.58628 0.54897 0.000287 -0.39209 -0.00020498 0.15689 8.202E-05 522.8001278316896 100.55 0.83798 100.55 100.07 100.91 0 55 23 3 0 0 0 0.56623 1 19710 19710 16.149 0 1 5303000 10848 1057;300 6914 6918 11102 11102 0.06622592411918049 EEKLQVVA 8 Unmodified _EEKLQVVA_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2234802246094 2 458.260925 914.507297 0.13506 6.1894E-05 2.0644 0.00094605 2.1995 0.0010079 458.26079200129885 55.505 0.88898 55.505 55.015 55.904 0 72 24 4 0 0 0 0.31581 1 10623 10623 61.357 13.012 1 13772000 10849 2168 6915 6919 11103 11103 0.04662365177625816 EEKLQVVA 8 Unmodified _EEKLQVVA_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23846435546875 2 458.260925 914.507297 -0.18821 -8.6248E-05 3.5043 0.0016059 3.3161 0.0015196 458.260965294004 58.05 1.2867 55.139 54.57 55.857 -2.9105 106 36 5 0 0 0 0.19607 1 11187 11187 46.021 2.1627 1 10654000 10850 2168 6915 6919 11104 11104 0.04662365177625816 EEKLQVVA 8 Unmodified _EEKLQVVA_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2243957519531 2 458.260925 914.507297 0.082876 3.7979E-05 3.3356 0.0015286 3.4185 0.0015666 458.26091172129156 58.385 1.1523 55.18 54.709 55.861 -3.2052 107 32 5 0 0 0 0.31581 1 10951 10951 52.268 12.311 1 11199000 10851 2168 6915 6919 11105 11105 0.04662365177625816 EEKLREQI 8 Unmodified _EEKLREQI_ 0 0 0 REV__nc|ENSG00000102081|Q06787-11|FMR1 REV__nc|ENSG00000102081|Q06787-11|FMR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.256591796875 2 522.787838 1043.56112 -0.20429 -0.0001068 0.025247 1.3199E-05 -0.17904 -9.3599E-05 522.7878383701325 65.82 0.57159 62.773 62.413 62.984 -3.047 26 16 2 0 0 0 0.96284 1 12683 12683 19.439 0 1 1917500 + 10852 23978 6916 6920 11106 11106 0.04108537609340601 EEKLYWVPPWH 11 Unmodified _EEKLYWVPPWH_ 0 0 0 REV__RHOBTB1|p.R650H|1|0.34|ENSG00000072422|chr10:60871624-60871624|C/T|missense_variant REV__RHOBTB1|p.R650H|1|0.34|ENSG00000072422|chr10:60871624-60871624|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3741455078125 2 742.372069 1482.72959 NaN NaN NaN NaN NaN NaN NaN 114.07 1 114.07 113.57 114.57 0 0 0 0 0.23429 1 22435 22435 4.897 2.3985 1 + 10853 24565 6917 6921 11107 11107 0.007530195229946912 EEKMEERD 8 Unmodified _EEKMEERD_ 0 0 0 nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000008128|Q9UQ88-9|CDK11A;CDK11B|p.K551Qfs*7|1|0.06|ENSG00000248333|chr1:1637148-1637161|TCGTGCAGGTGTTT/-|frameshift_variant;CDK11A|p.K539Qfs*7|1|0.56|ENSG00000008128|chr1:1704290-1704303|TCGTGCAGGTGTTT/-|frameshift_variant;ENST00000598846.1_1_1:1636463-1654047:-|nuORF nc|ENSG00000248333|P21127|CDK11B nc|ENSG00000248333|P21127|CDK11B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2645874023438 2 533.229496 1064.44444 0.49204 0.00026237 2.7965 0.0014912 3.2885 0.0017535 533.2295763375776 147.23 0.13559 142.12 142.07 142.2 -5.1108 5 3 2 0 0 0 0.71273 1 28482 28482 12.532 2.3482 1 1110300 10854 1037 6918 6922 11108 11108 -0.08520568672724949 EEKNIEQPG 9 Unmodified _EEKNIEQPG_ 0 0 0 REV__ENSG00000087338|ENST00000282570|GMCL1 REV__ENSG00000087338|ENST00000282570|GMCL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2706909179688 2 522.253828 1042.4931 -0.49794 -0.00026005 0.94523 0.00049365 0.44729 0.0002336 522.2542383557644 27.48 0.31387 25.725 25.583 25.897 -1.7552 11 8 2 0 0 0 0.66537 1 4617 4617 8.5933 0.68312 1 527380 + 10855 14503 6919 6923 11109 11109 -0.026443320413363836 EEKNIEQPG 9 Unmodified _EEKNIEQPG_ 0 0 0 REV__ENSG00000087338|ENST00000282570|GMCL1 REV__ENSG00000087338|ENST00000282570|GMCL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 522.253828 1042.4931 0.26167 0.00013666 0.73407 0.00038337 0.99574 0.00052003 522.2539412738378 27.672 0.24838 25.675 25.574 25.822 -1.9962 -0.024806 -0.00013695 NaN 8.5933 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 479550 + 10856 14503 6919 6923 -0.026443320413363836 EEKNIKEA 8 Unmodified _EEKNIKEA_ 0 0 0 REV__ENST00000569691.1_1_15:55700922-55700967:+|nuORF REV__ENST00000569691.1_1_15:55700922-55700967:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2346496582031 2 480.753464 959.492375 -0.068008 -3.2695E-05 0.43134 0.00020737 0.36333 0.00017467 480.75352034203246 18.476 0.31719 18.476 18.335 18.652 0 13 8 2 0 0 0 0.71273 1 2952 2952 12.532 0.29089 1 1381500 + 10857 23154 6920 6924 11110 11110 0.011008733096105061 EEKNILAT 8 Unmodified _EEKNILAT_ 0 0 0 tr|U7T4V7|U7T4V7_FUSNU2-C-methyl-D-erythritol4-phosphatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispDPE=3SV=1 tr|U7T4V7|U7T4V7_FUSNU2-C-methyl-D-erythritol4-phosphatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispDPE=3SV=1 tr|U7T4V7|U7T4V7_FUSNU2-C-methyl-D-erythritol4-phosphatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispDPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.226318359375 2 459.250557 916.486562 -0.064582 -2.9659E-05 -2.4367 -0.001119 -2.5013 -0.0011487 459.2490273186254 58.694 0.45725 58.694 58.442 58.9 0 26 12 3 0 0 0 0.64227 1 11236 11236 19.439 0 1 1008900 10858 26440 6921 6925 11111 11111 0.024977747979505693 EEKNKAVV 8 Unmodified _EEKNKAVV_ 0 0 0 ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1;PREX1|p.L957Pfs*50|1|0.25|ENSG00000124126|chr20:48650154-48650155|-/G|frameshift_variant ENSG00000124126|ENST00000371941|PREX1 ENSG00000124126|ENST00000371941|PREX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22698974609375 2 458.758549 915.502546 -0.072991 -3.3485E-05 0.4244 0.0001947 0.35141 0.00016121 458.75876210143304 101.42 0.35373 97.264 97.014 97.368 -4.1594 15 9 2 0 0 0 0.81042 1 19945 19945 16.942 0 1 462440 10859 3291 6922 6926 11112 11112 0.041414810348555875 EEKPKDAT 8 Unmodified _EEKPKDAT_ 0 0 0 ENST00000499418.2_1_8:125486424-125486685:-|nuORF ENST00000499418.2_1_8:125486424-125486685:-|nuORF ENST00000499418.2_1_8:125486424-125486685:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24664306640625 2 459.232364 916.450176 0.17054 7.8317E-05 -0.20032 -9.1996E-05 -0.029786 -1.3679E-05 459.2320525477562 17.397 0.34707 17.397 17.242 17.589 0 16 9 3 0 0 0 0.66265 1 2755 2755 18.135 0 1 500300 10860 10614 6923 6927 11113 11113 -0.011391020987730371 EEKQEESSW 9 Unmodified _EEKQEESSW_ 0 0 0 ENSG00000163982|ENST00000296358|OTOP1 ENSG00000163982|ENST00000296358|OTOP1 ENSG00000163982|ENST00000296358|OTOP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3256225585938 2 576.2462 1150.47785 0.13557 7.8121E-05 -1.1471 -0.00066101 -1.0115 -0.00058289 576.2454769276717 125.57 0.57331 120.97 120.68 121.26 -4.5984 24 15 2 0 0 0 0.56053 1 24798 24798 0.96228 0 1 3693500 10861 5492 6924 6928 11114 11114 -0.09137243629174918 EEKQHLLF 8 Unmodified _EEKQHLLF_ 0 0 0 ENSG00000174996|ENST00000394067|KLC2;ENST00000483152.1_1_11:66029308-66029782:+|nuORF ENSG00000174996|ENST00000394067|KLC2 ENSG00000174996|ENST00000394067|KLC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.267578125 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 145.2 1 145.2 144.7 145.7 0 0 0 0 0.21323 1 29015 29015 14.582 3.7578 1 10862 6380 6925 6929 11115 11115 0.025174564432290936 EEKQHLLF 8 Unmodified _EEKQHLLF_ 0 0 0 ENSG00000174996|ENST00000394067|KLC2;ENST00000483152.1_1_11:66029308-66029782:+|nuORF ENSG00000174996|ENST00000394067|KLC2 ENSG00000174996|ENST00000394067|KLC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.25927734375 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 149.85 1 145.12 144.62 145.62 -4.7323 0 0 0 0.21486 1 29759 29759 10.183 1.5901 1 10863 6380 6925 6929 11116 11116 0.025174564432290936 EEKQHLLF 8 Unmodified _EEKQHLLF_ 0 0 0 ENSG00000174996|ENST00000394067|KLC2;ENST00000483152.1_1_11:66029308-66029782:+|nuORF ENSG00000174996|ENST00000394067|KLC2 ENSG00000174996|ENST00000394067|KLC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2782592773438 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 150.13 1 145.01 144.51 145.51 -5.1204 0 0 0 0.21323 1 29092 29092 14.582 2.0501 1 10864 6380 6925 6929 11117 11117 0.025174564432290936 EEKQIHTY 8 Unmodified _EEKQIHTY_ 0 0 0 REV__PPEF1|p.H74Q|1|0.19|ENSG00000086717|chrX:18733795-18733795|T/A|missense_variant REV__PPEF1|p.H74Q|1|0.19|ENSG00000086717|chrX:18733795-18733795|T/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6780395507812 2 524.258914 1046.50327 0.38618 0.00020246 -0.37511 -0.00019665 0.011069 5.8033E-06 524.2587484444982 42.059 0.76708 42.059 41.689 42.456 0 62 21 4 0 0 0 0.99494 1 7920 7920 8.5933 1.304 1 5351800 + 10865 24498 6926 6930 11118 11118 -0.018117243160759244 EEKRPETA 8 Unmodified _EEKRPETA_ 0 0 0 ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24542236328125 2 480.243264 958.471974 -0.060353 -2.8984E-05 -0.26338 -0.00012649 -0.32373 -0.00015547 480.243141063265 58.22 0.85585 55.309 54.895 55.751 -2.9105 62 24 3 0 0 0 0.69887 2 11222 11222;11236 14.582 1.0738 1 7966300 10866 2524 6927 6931 11119;11120 11119 -0.008922973501967135 EEKRSLSHT 9 Unmodified _EEKRSLSHT_ 0 0 0 REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7799072265625 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 172.04 1 167.14 166.64 167.64 -4.8977 0 0 0 0.19711 1 34107 34107 0.12781 0 1 + 10867 18651 6928 6932 11121 11121 0.0071846546118194965 EEKRTNILYEF 11 Unmodified _EEKRTNILYEF_ 0 0 0 REV__ENSG00000206077|ENST00000508859|ZDHHC11B REV__ENSG00000206077|ENST00000508859|ZDHHC11B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2421875 3 481.248908 1440.72489 NaN NaN NaN NaN NaN NaN NaN 34.668 1 32.351 31.851 32.851 -2.3175 0 0 0 0.22632 1 6371 6371 0.094841 0 1 + 10868 19613 6929 6933 11122 11122 0.022160905895589167 EEKSLIKKVE 10 Unmodified _EEKSLIKKVE_ 0 0 0 REV__tr|U7SQH1|U7SQH1_FUSNUHDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01637PE=4SV=1 REV__tr|U7SQH1|U7SQH1_FUSNUHDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01637PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.296875 2 601.853178 1201.6918 0.067757 4.078E-05 0.36124 0.00021742 0.429 0.0002582 602.3536060113071 64.872 0.20897 64.872 64.786 64.995 0 7 5 2 0 0 0 0.74994 1 12483 12483 5.7319 0.43497 1 2411100 + 10869 25010 6930 6934 11123 11123 0.09902508537516042 EEKTEKPRFMF 11 Unmodified _EEKTEKPRFMF_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2445373535156 3 481.242988 1440.70714 NaN NaN NaN NaN NaN NaN NaN 67.708 1 64.381 63.881 64.881 -3.3268 0 0 0 0.22632 1 12771 12771 0.00056442 0 1 10870 12455 6931 6935 11124 11124 0.004410520630472092 EEKTFRGL 8 Unmodified _EEKTFRGL_ 0 0 0 REV__ENST00000591780.1_1_18:12075195-12075588:-|nuORF REV__ENST00000591780.1_1_18:12075195-12075588:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26422119140625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 45.242 1 45.242 44.742 45.742 0 0 0 0 0.19492 1 8500 8500 26.341 5.8877 1 + 10871 23344 6932 6936 11125 11125 0.023328834091330464 EEKTFRGL 8 Unmodified _EEKTFRGL_ 0 0 0 REV__ENST00000591780.1_1_18:12075195-12075588:-|nuORF REV__ENST00000591780.1_1_18:12075195-12075588:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2660217285156 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 47.935 1 45.066 44.566 45.566 -2.869 0 0 0 0.19492 1 9064 9064 26.341 9.399 1 + 10872 23344 6932 6936 11126 11126 0.023328834091330464 EEKTRRDRGP 10 Unmodified _EEKTRRDRGP_ 0 0 0 REV__TP53|p.E285K|1|0.88|ENSG00000141510|chr17:7673767-7673767|C/T|missense_variant REV__TP53|p.E285K|1|0.88|ENSG00000141510|chr17:7673767-7673767|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7635498046875 2 622.328724 1242.6429 NaN NaN NaN NaN NaN NaN NaN 52.118 1 49.031 48.531 49.531 -3.0876 0 0 0 0.22588 1 9581 9581 3.9444 0.3479 1 + 10873 24834 6933 6937 11127 11127 0.031280330211075125 EEKTTLCAGL 10 Unmodified _EEKTTLCAGL_ 0 0 0 IPO11|p.R91C|1|0.2|ENSG00000086200|chr5:62449958-62449958|C/T|missense_variant IPO11|p.R91C|1|0.2|ENSG00000086200|chr5:62449958-62449958|C/T|missense_variant IPO11|p.R91C|1|0.2|ENSG00000086200|chr5:62449958-62449958|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2799072265625 2 532.768257 1063.52196 0.32129 0.00017117 -0.40414 -0.00021531 -0.082853 -4.4141E-05 532.768017663903 36.528 1.0972 34.19 33.677 34.774 -2.3375 78 30 3 0 0 0 0.71097 1 6353 6353 10.074 0.6908 1 3154700 10874 11949 6934 6938 11128 11128 -0.007259307365529821 EEKVAQYL 8 Unmodified _EEKVAQYL_ 0 0 0 REV__ENSG00000183762|ENST00000400335|KREMEN1 REV__ENSG00000183762|ENST00000400335|KREMEN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25799560546875 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 127.45 1 122.66 122.16 123.16 -4.7958 0 0 0 0.19492 1 24463 24463 26.341 0.94196 1 + 10875 18859 6935 6939 11129 11129 0.012100613149868877 EEKVFRAV 8 Unmodified _EEKVFRAV_ 0 0 0 nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2552185058594 2 489.274367 976.53418 0.045353 2.219E-05 -0.028235 -1.3815E-05 0.017118 8.3752E-06 489.27430820379936 48.093 0.92043 45.224 44.809 45.729 -2.869 83 25 4 0 0 0 0.58432 1 9147 9147 23.148 5.0134 1 58156000 10876 1853 6936 6940 11130 11130 0.04497473788808293 EEKVFRAV 8 Unmodified _EEKVFRAV_ 0 0 0 nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2671203613281 2 489.274367 976.53418 0.13007 6.3638E-05 -0.075613 -3.6996E-05 0.054453 2.6643E-05 489.274283798858 48.186 1.0593 45.244 44.788 45.848 -2.9421 90 29 4 0 0 0 0.27447 1 8847 8847 37.974 9.4872 1 53783000 10877 1853 6936 6940 11131 11131 0.04497473788808293 EEKVFRAV 8 Unmodified _EEKVFRAV_ 0 0 0 nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25506591796875 2 489.274367 976.53418 -0.3345 -0.00016366 0.24761 0.00012115 -0.086891 -4.2514E-05 489.2744395538082 48.089 2.0883 45.139 44.568 46.656 -2.9499 119 59 4 0 0 0 0.0942 3 8830 8830;8865;8896 64.236 28.192 1 52822000 10878 1853 6936 6940 11132;11133;11134 11132 0.04497473788808293 EEKVFRAV 8 Unmodified _EEKVFRAV_ 0 0 0 nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.274367 976.53418 0.49628 0.00024282 -0.3704 -0.00018123 0.12588 6.159E-05 489.274145657766 45.299 1.1533 45.299 44.849 46.003 0 0.07244 -0.00030112 NaN 64.236 94 32 5 NaN NaN NaN NaN 0 NaN NaN 0 69782000 10879 1853 6936 6940 0.04497473788808293 EEKVRAVF 8 Unmodified _EEKVRAVF_ 0 0 0 ENSG00000115216|ENST00000379852|NRBP1 ENSG00000115216|ENST00000379852|NRBP1 ENSG00000115216|ENST00000379852|NRBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2738037109375 2 489.274367 976.53418 -0.3345 -0.00016366 0.24761 0.00012115 -0.086891 -4.2514E-05 489.2744395538082 48.089 2.0883 45.139 44.568 46.656 -2.9499 119 59 4 0 0 0 0.73426 1 8745 8745 9.3474 0.75416 1 52822000 10880 2830 6937 6941 11135 11135 0.04497473788808293 EEKVSQPEV 9 Unmodified _EEKVSQPEV_ 0 0 0 TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant;ENSG00000166848|ENST00000300086|TERF2IP TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27197265625 2 522.764029 1043.5135 -0.5253 -0.00027461 0.44207 0.0002311 -0.083233 -4.3511E-05 522.764192640854 36.241 0.62647 33.893 33.582 34.208 -2.3479 29 17 3 0 0 0 0.71527 1 6418 6418 19.257 19.257 1 1764300 10881 5754 6938 6942 11136 11136 -0.006511613815291639 EEKVSQPEV 9 Unmodified _EEKVSQPEV_ 0 0 0 TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant;ENSG00000166848|ENST00000300086|TERF2IP TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.764029 1043.5135 -0.6338 -0.00033133 0.57168 0.00029885 -0.062121 -3.2475E-05 522.7642586275665 36.28 0.67018 33.886 33.593 34.263 -2.3938 -0.003209 6.7248E-05 NaN 13.906 36 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2198500 10882 5754 6938 6942 -0.006511613815291639 EEKVTFNL 8 Unmodified _EEKVTFNL_ 0 0 0 nc|ENSG00000151657|O60870-2|KIN;ENSG00000151657|ENST00000379562|KIN nc|ENSG00000151657|O60870-2|KIN nc|ENSG00000151657|O60870-2|KIN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25762939453125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 58.555 1 55.645 55.145 56.145 -2.9105 0 0 0 0.22594 1 11249 11249 1.4551 0.77368 1 10883 4880 6939 6943 11137 11137 0.012100613150096251 EEKYYKIN 8 Unmodified _EEKYYKIN_ 0 0 0 REV__tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1 REV__tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.778564453125 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 140.77 1 135.78 135.28 136.28 -4.9877 0 0 0 0.20896 1 27097 27097 18.135 1.0221 1 + 10884 25384 6940 6944 11138 11138 -2.2671392343909247E-05 EEKYYKIN 8 Unmodified _EEKYYKIN_ 0 0 0 REV__tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1 REV__tr|U7T468|U7T468_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00277PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77685546875 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 140.36 1 135.49 134.99 135.99 -4.8678 0 0 0 0.21039 1 27063 27063 16.942 1.0951 1 + 10885 25384 6940 6944 11139 11139 -2.2671392343909247E-05 EELAALRRE 9 Unmodified _EELAALRRE_ 0 0 0 REV__ENST00000491700.1_1_1:114522138-114523244:+|nuORF REV__ENST00000491700.1_1_1:114522138-114523244:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7957153320312 2 543.798737 1085.58292 NaN NaN NaN NaN NaN NaN NaN 40.82 1 38.185 37.685 38.685 -2.6348 0 0 0 0.22251 1 7616 7616 16.942 0 1 + 10886 15498 6941 6945 11140 11140 0.0435534235787145 EELAALRRE 9 Unmodified _EELAALRRE_ 0 0 0 REV__ENST00000491700.1_1_1:114522138-114523244:+|nuORF REV__ENST00000491700.1_1_1:114522138-114523244:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.772705078125 2 543.798737 1085.58292 NaN NaN NaN NaN NaN NaN NaN 40.869 1 38.234 37.734 38.734 -2.6348 0 0 0 0.23508 1 7626 7626 7.9102 0 1 + 10887 15498 6941 6945 11141 11141 0.0435534235787145 EELAEIEK 8 Unmodified _EELAEIEK_ 0 0 0 ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5;TUBGCP5|p.D713Ifs*5|1|0.18|ENSG00000275835|chr15:23009953-23009953|T/-|frameshift_variant ENSG00000275835|ENST00000615383|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2348327636719 2 480.747847 959.481142 0.06877 3.3061E-05 -0.13045 -6.2711E-05 -0.061675 -2.965E-05 480.74772784083825 79.516 1.4482 76.006 75.483 76.932 -3.5102 110 40 4 0 0 0 0.2118 1 15610 15610 44.407 6.2558 1 89053000 10888 8026 6942 6946 11142 11142 -0.00021948784524283838 EELAGLKN 8 Unmodified _EELAGLKN_ 0 0 0 SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant;nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2 SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2358093261719 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 76.077 1 72.443 71.943 72.943 -3.6337 0 0 0 0.21323 1 14474 14474 14.582 0 1 10889 4040 6943 6947 11143 11143 0.019015056264720442 EELAKNVTG 9 Unmodified _EELAKNVTG_ 0 0 0 nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2546691894531 2 480.753464 959.492375 -0.13205 -6.3485E-05 0.38057 0.00018296 0.24852 0.00011948 480.753678497933 55.437 0.92626 55.437 54.802 55.728 0 37 25 2 0 0 0 0.5059 1 10557 10557 19.257 3.4098 1 1426100 10890 3962 6944 6948 11144 11144 0.011008733096332435 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 86.118 1 86.118 85.618 86.618 0 0 0 0 0.23508 1 16807 16807 2.7352 0.23671 1 10891 3570 6945 6949 11145 11145 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 98.026 1 98.026 97.526 98.526 0 0 0 0 0.23508 1 19212 19212 2.7352 0.23671 1 10892 3570 6945 6949 11146 11146 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 106.37 1 106.37 105.87 106.87 0 0 0 0 0.23508 1 20909 20909 7.609 2.3121 1 10893 3570 6945 6949 11147 11147 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.216552734375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 107.05 1 107.05 106.55 107.55 0 0 0 0 0.23508 1 21049 21049 7.609 2.3121 1 10894 3570 6945 6949 11148 11148 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 133.9 1 133.9 133.4 134.4 0 0 0 0 0.23508 1 26497 26497 5.2969 0.39987 1 10895 3570 6945 6949 11149 11149 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 134.17 1 134.17 133.67 134.67 0 0 0 0 0.23508 1 26554 26554 5.2969 1.3525 1 10896 3570 6945 6949 11150 11150 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2020263671875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 147.79 1 147.79 147.29 148.29 0 0 0 0 0.23508 1 29566 29566 1.0715 0.10919 1 10897 3570 6945 6949 11151 11151 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201904296875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 79.743 1 76.232 75.732 76.732 -3.5102 0 0 0 0.23508 1 15574 15574 8.1555 0.8663 1 10898 3570 6945 6949 11152 11152 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 98.866 1 94.733 94.233 95.233 -4.1326 0 0 0 0.23508 1 19415 19415 5.2969 0.39987 1 10899 3570 6945 6949 11153 11153 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 109.42 1 105.04 104.54 105.54 -4.3776 0 0 0 0.23508 1 21564 21564 2.7352 0 1 10900 3570 6945 6949 11154 11154 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 116.91 1 112.43 111.93 112.93 -4.486 0 0 0 0.23508 1 23047 23047 2.7352 0.23671 1 10901 3570 6945 6949 11155 11155 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2168884277344 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 117.09 1 112.6 112.1 113.1 -4.486 0 0 0 0.23508 1 23083 23083 2.7352 0.23671 1 10902 3570 6945 6949 11156 11156 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013244628906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 117.54 1 113.04 112.54 113.54 -4.502 0 0 0 0.23508 1 23171 23171 2.7352 0.10396 1 10903 3570 6945 6949 11157 11157 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 156.84 1 152.05 151.55 152.55 -4.7885 0 0 0 0.23508 1 31189 31189 5.2969 0.39987 1 10904 3570 6945 6949 11158 11158 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 87.868 1 83.873 83.373 84.373 -3.9953 0 0 0 0.23508 1 16734 16734 2.7352 0.23671 1 10905 3570 6945 6949 11159 11159 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 103.96 1 99.612 99.112 100.11 -4.346 0 0 0 0.23508 1 19916 19916 2.7352 0.23671 1 10906 3570 6945 6949 11160 11160 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112.05 1 107.53 107.03 108.03 -4.5259 0 0 0 0.23508 1 21509 21509 8.1555 2.3721 1 10907 3570 6945 6949 11161 11161 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 139.19 1 134.23 133.73 134.73 -4.952 0 0 0 0.23508 1 26773 26773 5.2969 1.3525 1 10908 3570 6945 6949 11162 11162 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 78.47 1 74.811 74.311 75.311 -3.6588 0 0 0 0.23508 1 14949 14949 7.609 2.3121 1 10909 3570 6945 6949 11163 11163 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 90.083 1 86.305 85.805 86.805 -3.7779 0 0 0 0.23508 1 17237 17237 2.7352 0.23671 1 10910 3570 6945 6949 11164 11164 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 101.53 1 97.537 97.037 98.037 -3.9895 0 0 0 0.23508 1 19507 19507 2.7352 0.23671 1 10911 3570 6945 6949 11165 11165 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 109.39 1 105.21 104.71 105.71 -4.1826 0 0 0 0.23508 1 21052 21052 2.7352 0 1 10912 3570 6945 6949 11166 11166 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 109.75 1 105.57 105.07 106.07 -4.1826 0 0 0 0.23508 1 21120 21120 2.7352 1.2533 1 10913 3570 6945 6949 11167 11167 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2171325683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 116.95 1 112.6 112.1 113.1 -4.3585 0 0 0 0.23508 1 22514 22514 5.2969 0.39987 1 10914 3570 6945 6949 11168 11168 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013854980469 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 117.2 1 112.84 112.34 113.34 -4.3585 0 0 0 0.23508 1 22560 22560 5.2969 1.3525 1 10915 3570 6945 6949 11169 11169 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 131.15 1 126.38 125.88 126.88 -4.7725 0 0 0 0.23508 1 25247 25247 1.1933 0.12188 1 10916 3570 6945 6949 11170 11170 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 140.3 1 135.45 134.95 135.95 -4.8492 0 0 0 0.23508 1 27052 27052 1.1933 0.12188 1 10917 3570 6945 6949 11171 11171 0.0461712798901317 EELALYGKR 9 Unmodified _EELALYGKR_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2019348144531 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 158.05 1 152.78 152.28 153.28 -5.2712 0 0 0 0.23508 1 30665 30665 1.1933 0.12188 1 10918 3570 6945 6949 11172 11172 0.0461712798901317 EELAMKAGL 9 Unmodified _EELAMKAGL_ 0 0 0 tr|U7SM08|U7SM08_FUSNUProbableD-serinedehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dsdAPE=3SV=1 tr|U7SM08|U7SM08_FUSNUProbableD-serinedehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dsdAPE=3SV=1 tr|U7SM08|U7SM08_FUSNUProbableD-serinedehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dsdAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25445556640625 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 78.075 1 74.416 73.916 74.916 -3.6588 0 0 0 0.21065 1 14871 14871 20.454 0 1 10919 25999 6946 6950 11173 11173 0.013190054429401243 EELAPRFT 8 Unmodified _EELAPRFT_ 0 0 0 REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78778076171875 2 481.750724 961.486896 NaN NaN NaN NaN NaN NaN NaN 44.951 1 42.203 41.703 42.703 -2.7475 0 0 0 0.21039 1 8147 8147 16.942 4.4107 1 + 10920 23986 6947 6951 11174 11174 0.0046119451779986775 EELATKFLM 9 Unmodified _EELATKFLM_ 0 0 0 REV__IQGAP2|p.K937M|1|0.26|ENSG00000145703|chr5:76668811-76668811|A/T|missense_variant REV__IQGAP2|p.K937M|1|0.26|ENSG00000145703|chr5:76668811-76668811|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2596435546875 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 125.94 1 121.18 120.68 121.68 -4.7681 0 0 0 0.22962 1 24172 24172 14.838 3.198 1 + 10921 23670 6948 6952 11175 11175 0.015478476484986459 EELDEMDLW 9 Unmodified _EELDEMDLW_ 0 0 0 REV__ENST00000459765.1_1_1:109824234-109825347:-|nuORF REV__ENST00000459765.1_1_1:109824234-109825347:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2586669921875 2 590.247354 1178.48016 NaN NaN NaN NaN NaN NaN NaN 159.17 1 154.38 153.88 154.88 -4.7952 0 0 0 0.23508 1 31649 31649 12.532 1.7076 1 + 10922 21867 6949 6953 11176 11176 -0.1019453121573406 EELDMDKVTA 10 Unmodified _EELDMDKVTA_ 0 0 0 ZNF704|p.L253Pfs*36|1|0.05|ENSG00000164684|chr8:80664984-80664985|-/AAACCAG|frameshift_variant;ENSG00000164684|ENST00000327835|ZNF704 ZNF704|p.L253Pfs*36|1|0.05|ENSG00000164684|chr8:80664984-80664985|-/AAACCAG|frameshift_variant ZNF704|p.L253Pfs*36|1|0.05|ENSG00000164684|chr8:80664984-80664985|-/AAACCAG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3121948242188 2 575.768454 1149.52235 -0.044784 -2.5785E-05 -0.10465 -6.0256E-05 -0.14944 -8.6041E-05 575.7682375007611 76.208 0.46449 72.793 72.574 73.039 -3.4151 21 12 2 0 0 0 0.8126 1 14906 14906 19.362 7.7216 1 1871800 10923 5562 6950 6954 11177 11177 -0.04642555807345161 EELDPSLL 8 Unmodified _EELDPSLL_ 0 0 0 ENST00000216733.7_1_14:23826097-23826370:-|nuORF ENST00000216733.7_1_14:23826097-23826370:-|nuORF ENST00000216733.7_1_14:23826097-23826370:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2379150390625 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 113.01 1 113.01 112.51 113.51 0 0 0 0 0.20568 1 22221 22221 20.871 0 1 10924 8119 6951 6955 11178 11178 -0.0009733381323258072 EELDPVTL 8 Unmodified _EELDPVTL_ 0 0 0 ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A ENSG00000197557|ENST00000355689|TTC30A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2377014160156 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 117.08 1 112.73 112.23 113.23 -4.3585 0 0 0 0.17894 1 22538 22538 32.117 5.7757 1 10925 7378;7297 6952 6956 11179 11179 -0.0009733381323258072 EELDQMESL 9 Unmodified _EELDQMESL_ 0 0 0 REV__ENST00000590311.5_1_17:67109638-67111556:-|nuORF REV__ENST00000590311.5_1_17:67109638-67111556:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7760620117188 2 547.239529 1092.46451 0.32976 0.00018046 0.09068 4.9624E-05 0.42044 0.00023008 547.2394631790395 134.63 0.49765 134.63 134.31 134.81 0 17 13 2 0 0 0 0.72864 1 26670 26670 7.2892 0 1 2813100 + 10926 12891 6953 6957 11180 11180 -0.07802817732772382 EELDRVLG 8 Unmodified _EELDRVLG_ 0 0 0 ENSG00000073067|ENST00000308919|CYP2W1 ENSG00000073067|ENST00000308919|CYP2W1 ENSG00000073067|ENST00000308919|CYP2W1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.23809814453125 2 465.748182 929.481811 0.092927 4.3281E-05 -0.30798 -0.00014344 -0.21505 -0.00010016 465.7481754227461 20.129 0.31226 20.129 19.963 20.276 0 10 8 2 0 0 0 0.97966 1 3312 3312 11.64 0 1 233760 10927 1481 6954 6958 11181 11181 0.014248906551983964 EELEEEEEAPG 11 Unmodified _EELEEEEEAPG_ 0 0 0 REV__ENSG00000188070|ENST00000433688|ZFTA REV__ENSG00000188070|ENST00000433688|ZFTA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7608032226562 2 630.759337 1259.50412 NaN NaN NaN NaN NaN NaN NaN 46.659 1 43.793 43.293 44.293 -2.8666 0 0 0 0.23324 1 8497 8497 5.7319 0 1 + 10928 19131 6955 6959 11182 11182 -0.11525019248369972 EELEEKSTT 9 Unmodified _EELEEKSTT_ 0 0 0 ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2;ENST00000507947.5_1_4:76580183-76582836:-|nuORF ENSG00000138757|ENST00000359707|G3BP2 ENSG00000138757|ENST00000359707|G3BP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 533.250951 1064.48735 0.39367 0.00020993 -0.15436 -8.2313E-05 0.23931 0.00012761 533.2509441168587 49.053 1.1452 46.054 45.368 46.513 -2.999 90 32 4 0 0 0 0.39168 1 8903 8903 1.2148 0 1 9483200 10929 4207 6956 6960 11183 11183 -0.042314753436585306 EELEGKRT 8 Unmodified _EELEGKRT_ 0 0 0 ENSG00000136710|ENST00000259229|CCDC115;ENST00000465315.1_1_2:131099551-131099698:-|nuORF ENSG00000136710|ENST00000259229|CCDC115 ENSG00000136710|ENST00000259229|CCDC115 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2527770996094 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 125.29 1 120.69 120.19 121.19 -4.5984 0 0 0 0.19492 1 24701 24701 26.341 3.1929 1 10930 4031 6957 6961 11184 11184 0.0057998916687438395 EELEHLNQA 9 Unmodified _EELEHLNQA_ 0 0 0 nc|ENSG00000175137|Q7L8J4-2|SH3BP5L;ENSG00000175137|ENST00000366472|SH3BP5L nc|ENSG00000175137|Q7L8J4-2|SH3BP5L nc|ENSG00000175137|Q7L8J4-2|SH3BP5L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2628784179688 2 541.759278 1081.504 0.54317 0.00029427 -0.1865 -0.00010104 0.35668 0.00019323 541.7594042223112 42.601 0.49664 42.601 42.351 42.847 0 19 13 2 0 0 0 0.31714 1 7972 7972 30.637 16.73 1 717980 10931 6387 6958 6962 11185 11185 -0.033489296670495605 EELEKLQQY 9 Unmodified _EELEKLQQY_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2586059570312 2 590.298236 1178.58192 0.36711 0.00021671 -0.80156 -0.00047316 -0.43445 -0.00025645 590.2976366433256 73.515 0.71104 70.204 69.778 70.489 -3.3107 63 19 4 0 0 0 0.12542 1 14284 14284 56.177 8.5827 1 39433000 10932 1728 6959 6963 11186 11186 -0.00022916801663086517 EELEKLQQY 9 Unmodified _EELEKLQQY_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2491455078125 2 590.298236 1178.58192 0.62298 0.00036774 -0.97189 -0.0005737 -0.34891 -0.00020596 590.297454670105 73.893 0.69261 70.216 69.757 70.45 -3.6764 73 19 5 0 0 0 0.45788 1 13919 13919 39.95 5.548 1 36374000 10933 1728 6959 6963 11187 11187 -0.00022916801663086517 EELEKLQQY 9 Unmodified _EELEKLQQY_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 590.298236 1178.58192 0.11827 6.9813E-05 -0.30856 -0.00018214 -0.19029 -0.00011233 590.2978860163716 69.936 0.74911 69.936 69.56 70.309 0 -0.2041 0.00047761 NaN 81.89 72 20 4 NaN NaN NaN NaN 0 NaN NaN 0 51340000 10934 1728 6959 6963 -0.00022916801663086517 EELEKLQQY 9 Unmodified _EELEKLQQY_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 590.298236 1178.58192 0.38549 0.00022755 -0.79398 -0.00046868 -0.40848 -0.00024113 590.2975649269465 73.797 0.70973 70.203 69.793 70.503 -3.594 0.062859 -9.5465E-05 NaN 81.89 75 19 5 NaN NaN NaN NaN 0 NaN NaN 0 58909000 10935 1728 6959 6963 -0.00022916801663086517 EELENVPTL 9 Unmodified _EELENVPTL_ 0 0 0 ENST00000465727.5_1_1:1153052-1158671:-|nuORF;nc|ENSG00000078808|Q9BRK5-6|SDF4 ENST00000465727.5_1_1:1153052-1158671:-|nuORF ENST00000465727.5_1_1:1153052-1158671:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2667236328125 2 522.266404 1042.51826 0.57466 0.00030013 0.46746 0.00024414 1.0421 0.00054427 522.2666994336855 102.47 0.58334 98.447 98.15 98.733 -4.0212 30 16 2 0 0 0 0.44262 1 19653 19653 23.148 0 1 1378700 10936 10125 6960 6964 11188 11188 -0.001302772387589357 EELEQKYTY 9 Unmodified _EELEQKYTY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2843017578125 2 601.782418 1201.55028 0.088631 5.3337E-05 0.34059 0.00020496 0.42922 0.0002583 601.7825533426534 58.98 0.70461 58.98 58.617 59.321 0 57 19 4 0 0 0 6.434000000000001E-57 2 11310 11257;11310 211.85 125.52 1 28997000 10937 2854 6961 6965 11189;11190 11190 -0.0424290955561446 EELEQKYTY 9 Unmodified _EELEQKYTY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2841796875 2 601.782418 1201.55028 1.0698 0.00064378 -0.57804 -0.00034785 0.49176 0.00029593 601.7820264287018 62.222 0.6686 59.261 58.937 59.606 -2.9614 62 18 4 0 0 0 2.9473000000000002E-33 3 12011 11958;12011;12062 189.73 103.4 1 38372000 10938 2854 6961 6965 11191;11192;11193 11192 -0.0424290955561446 EELEQKYTY 9 Unmodified _EELEQKYTY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2838134765625 2 601.782418 1201.55028 0.49331 0.00029687 0.062368 3.7532E-05 0.55568 0.0003344 601.7823798301799 62.628 0.73335 59.212 58.875 59.609 -3.4158 65 20 5 0 0 0 9.2289E-44 2 11660 11660;11704 195.45 122.48 1 29620000 10939 2854 6961 6965 11194;11195 11194 -0.0424290955561446 EELEQKYTY 9 Unmodified _EELEQKYTY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2841186523438 2 601.782418 1201.55028 0.2987 0.00017975 0.15077 9.0728E-05 0.44947 0.00027048 601.7824466385783 62.434 0.73141 59.195 58.826 59.557 -3.2395 68 20 4 0 0 0 1.2164E-44 2 11695 11695;11739 203.64 107.27 1 27597000 10940 2854 6961 6965 11196;11197 11196 -0.0424290955561446 EELEQMLDS 9 Unmodified _EELEQMLDS_ 0 0 0 ENST00000493902.5_1_16:31047079-31051121:+|nuORF;ENST00000487411.5_1_16:31045754-31051121:+|nuORF;nc|ENSG00000103496|Q12846-2|STX4;ENSG00000103496|ENST00000313843|STX4 ENST00000493902.5_1_16:31047079-31051121:+|nuORF ENST00000493902.5_1_16:31047079-31051121:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7779541015625 2 547.239529 1092.46451 -0.23989 -0.00013127 2.2742 0.0012445 2.0343 0.0011132 547.7413863407684 36.339 0.38972 33.946 33.768 34.158 -2.3938 14 10 2 0 0 0 0.48644 1 6681 6681 20.454 10.27 1 1936300 10941 2194 6962 6966 11198 11198 -0.07802817732772382 EELEREEEQDE 11 Unmodified _EELEREEEQDE_ 0 0 0 REV__NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant REV__NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.743408203125 3 478.86708 1433.57941 NaN NaN NaN NaN NaN NaN NaN 21.651 1 19.93 19.43 20.43 -1.7211 0 0 0 0.23698 1 3397 3397 1.1098 0.18422 1 + 10942 18330 6963 6967 11199 11199 -0.12003461787935521 EELERLRAA 9 Unmodified _EELERLRAA_ 0 0 0 IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant;ENSG00000167378|ENST00000422989|IRGQ IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7911376953125 2 543.798737 1085.58292 NaN NaN NaN NaN NaN NaN NaN 38.58 1 38.58 38.08 39.08 0 0 0 0 0.23508 1 7155 7155 12.532 1.7076 1 10943 5805 6964 6968 11200 11200 0.043553423578941874 EELETETL 8 Unmodified _EELETETL_ 0 0 0 REV__nc|ENSG00000128596|Q96JN2-2|CCDC136 REV__nc|ENSG00000128596|Q96JN2-2|CCDC136 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77069091796875 2 482.229487 962.444422 0.039284 1.8944E-05 0.25759 0.00012422 0.29688 0.00014316 482.2293995275916 45.273 1.3407 42.483 41.778 43.119 -2.79 62 37 2 0 0 0 0.64227 1 8579 8579 19.439 0 1 1380600 + 10944 13281 6965 6969 11201 11201 -0.03830245401081811 EELFALMWRV 10 Unmodified _EELFALMWRV_ 0 0 0 REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.8922424316406 3 431.893519 1292.65873 NaN NaN NaN NaN NaN NaN NaN 133.46 1 133.46 132.96 133.96 0 0 0 0 0.22588 1 26406 26406 3.5871 0.85186 1 + 10945 24714 6966 6970 11202 11202 0.024106032137979128 EELFLLLC 8 Unmodified _EELFLLLC_ 0 0 0 REV__ENSG00000100359|ENST00000248929|SGSM3 REV__ENSG00000100359|ENST00000248929|SGSM3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2600402832031 2 490.262079 978.509605 NaN NaN NaN NaN NaN NaN NaN 36.372 1 33.978 33.478 34.478 -2.3938 0 0 0 0.21181 1 6716 6716 15.768 0 1 + 10946 14700 6967 6971 11203 11203 0.019490775910639968 EELGGILKA 9 Unmodified _EELGGILKA_ 0 0 0 nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;ENSG00000137040|ENST00000259569|RANBP6 nc|ENSG00000065150|O00410-3|IPO5 nc|ENSG00000065150|O00410-3|IPO5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2483825683594 2 465.26875 928.522947 0.54479 0.00025347 -0.92265 -0.00042928 -0.37786 -0.00017581 465.26831279310915 102.14 0.70085 102.14 101.78 102.48 0 44 19 3 0 0 0 0.66788 1 20044 20044 29.082 2.1979 1 6464100 10947 12226 6968 6972 11204 11204 0.055826516946467564 EELGGILKA 9 Unmodified _EELGGILKA_ 0 0 0 nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;ENSG00000137040|ENST00000259569|RANBP6 nc|ENSG00000065150|O00410-3|IPO5 nc|ENSG00000065150|O00410-3|IPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2591247558594 2 465.26875 928.522947 -0.38279 -0.0001781 0.11934 5.5525E-05 -0.26345 -0.00012258 465.2688003801157 105.99 0.73512 101.73 101.38 102.11 -4.2638 48 20 3 0 0 0 0.2219 1 20896 20896 36.127 2.0246 1 7094000 10948 12226 6968 6972 11205 11205 0.055826516946467564 EELGGILKA 9 Unmodified _EELGGILKA_ 0 0 0 nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;ENSG00000137040|ENST00000259569|RANBP6 nc|ENSG00000065150|O00410-3|IPO5 nc|ENSG00000065150|O00410-3|IPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2592468261719 2 465.26875 928.522947 0.0072995 3.3962E-06 -0.20797 -9.6762E-05 -0.20067 -9.3366E-05 465.26857965843334 106.18 0.65679 101.8 101.47 102.13 -4.3764 34 18 2 0 0 0 0.25183 1 20377 20377 34.402 2.0962 1 8290300 10949 12226 6968 6972 11206 11206 0.055826516946467564 EELGGILKA 9 Unmodified _EELGGILKA_ 0 0 0 nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;ENSG00000137040|ENST00000259569|RANBP6 nc|ENSG00000065150|O00410-3|IPO5 nc|ENSG00000065150|O00410-3|IPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25848388671875 2 465.26875 928.522947 0.73582 0.00034235 -0.90243 -0.00041987 -0.16661 -7.7518E-05 465.2682931474938 105.89 0.69346 101.8 101.53 102.23 -4.0913 37 19 2 0 0 0 0.34411 1 20394 20394 29.082 2.1979 1 6643800 10950 12226 6968 6972 11207 11207 0.055826516946467564 EELGHTETY 9 Unmodified _EELGHTETY_ 0 0 0 ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF ENSG00000064932|ENST00000361757|SBNO2 ENSG00000064932|ENST00000361757|SBNO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2593383789062 2 539.738011 1077.46147 0.28793 0.00015541 -0.41789 -0.00022555 -0.12996 -7.0143E-05 539.737756169093 35.616 0.68819 35.616 35.274 35.962 0 70 19 5 0 0 0 0.52414 1 6579 6579 18.135 3.2967 1 73324000 10951 1345 6969 6973 11208 11208 -0.07416324795258333 EELGHTETY 9 Unmodified _EELGHTETY_ 0 0 0 ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF ENSG00000064932|ENST00000361757|SBNO2 ENSG00000064932|ENST00000361757|SBNO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2619018554688 2 539.738011 1077.46147 -0.15891 -8.5769E-05 0.33449 0.00018054 0.17558 9.477E-05 539.7381527937537 38.163 0.69221 35.694 35.438 36.13 -2.4688 63 19 5 0 0 0 0.46541 1 7030 7030 21.747 8.2388 1 97745000 10952 1345 6969 6973 11209 11209 -0.07416324795258333 EELGHTETY 9 Unmodified _EELGHTETY_ 0 0 0 ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF ENSG00000064932|ENST00000361757|SBNO2 ENSG00000064932|ENST00000361757|SBNO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2786865234375 2 539.738011 1077.46147 0.27906 0.00015062 -0.1188 -6.412E-05 0.16026 8.65E-05 539.7379123673751 37.991 0.90095 35.654 35.398 36.299 -2.3375 74 25 4 0 0 0 0.35443 2 6746 6746;6788 28.487 14.581 1 77034000 10953 1345 6969 6973 11210;11211 11210 -0.07416324795258333 EELGHTETY 9 Unmodified _EELGHTETY_ 0 0 0 ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF ENSG00000064932|ENST00000361757|SBNO2 ENSG00000064932|ENST00000361757|SBNO2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 539.738011 1077.46147 0.18835 0.00010166 -0.0015673 -8.4595E-07 0.18679 0.00010082 539.7379539466832 38.056 0.92072 35.614 35.38 36.301 -2.4419 -0.030404 3.0743E-05 NaN 28.487 67 25 4 NaN NaN NaN NaN 0 NaN NaN 0 81011000 10954 1345 6969 6973 -0.07416324795258333 EELGLVHSP 9 Unmodified _EELGLVHSP_ 0 0 0 ENST00000482213.1_1_22:50688804-50689303:-|nuORF;nc|ENSG00000100429|Q969S8-5|HDAC10;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10 ENST00000482213.1_1_22:50688804-50689303:-|nuORF ENST00000482213.1_1_22:50688804-50689303:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2649230957031 2 490.756007 979.497461 0.60622 0.00029751 -0.59624 -0.00029261 0.0099853 4.9003E-06 490.75568521787494 78.93 0.86627 78.93 78.404 79.27 0 37 24 2 0 0 0 0.19271 1 15286 15286 37.974 14.826 1 2360100 10955 1978 6970 6974 11212 11212 0.006891771722280282 EELGLVHSP 9 Unmodified _EELGLVHSP_ 0 0 0 ENST00000482213.1_1_22:50688804-50689303:-|nuORF;nc|ENSG00000100429|Q969S8-5|HDAC10;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10 ENST00000482213.1_1_22:50688804-50689303:-|nuORF ENST00000482213.1_1_22:50688804-50689303:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2640686035156 2 490.756007 979.497461 0.10548 5.1764E-05 0.11454 5.6211E-05 0.22002 0.00010797 490.7559450782785 82.352 0.87271 78.762 78.239 79.111 -3.5899 41 24 2 0 0 0 0.054955 1 16085 16085 71.134 32.958 1 2943100 10956 1978 6970 6974 11213 11213 0.006891771722280282 EELGLVHSP 9 Unmodified _EELGLVHSP_ 0 0 0 ENST00000482213.1_1_22:50688804-50689303:-|nuORF;nc|ENSG00000100429|Q969S8-5|HDAC10;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10 ENST00000482213.1_1_22:50688804-50689303:-|nuORF ENST00000482213.1_1_22:50688804-50689303:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.262939453125 2 490.756007 979.497461 0.16138 7.92E-05 0.13832 6.7879E-05 0.2997 0.00014708 490.7560299053176 82.765 0.88873 78.892 78.297 79.186 -3.8736 53 25 3 0 0 0 0.12295 1 15667 15667 54.774 37.831 1 3142700 10957 1978 6970 6974 11214 11214 0.006891771722280282 EELGLVHSP 9 Unmodified _EELGLVHSP_ 0 0 0 ENST00000482213.1_1_22:50688804-50689303:-|nuORF;nc|ENSG00000100429|Q969S8-5|HDAC10;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10 ENST00000482213.1_1_22:50688804-50689303:-|nuORF ENST00000482213.1_1_22:50688804-50689303:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27593994140625 2 490.756007 979.497461 -0.35942 -0.00017639 0.56188 0.00027574 0.20245 9.9355E-05 490.75615578050355 82.561 0.86648 78.863 78.311 79.178 -3.6985 46 24 3 0 0 0 0.19271 1 15763 15763 54.774 27.89 1 2831100 10958 1978 6970 6974 11215 11215 0.006891771722280282 EELGSILGP 9 Unmodified _EELGSILGP_ 0 0 0 REV__nc|ENSG00000105778|Q8NBF6-2|AVL9 REV__nc|ENSG00000105778|Q8NBF6-2|AVL9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2388000488281 2 457.745108 913.475663 -0.052815 -2.4176E-05 0.30912 0.0001415 0.2563 0.00011732 457.74516546598846 106.86 1.2403 102.44 101.65 102.89 -4.4121 76 35 4 0 0 0 0.14832 1 20452 20452 44.407 2.3125 1 11968000 + 10959 15018 6971 6975 11216 11216 0.015463724236724374 EELHLIVY 8 Unmodified _EELHLIVY_ 0 0 0 ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000485620.1_1_7:6851426-6854399:-|nuORF ENSG00000146574|ENST00000316731|CCZ1B ENSG00000146574|ENST00000316731|CCZ1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.3870544433594 2 508.276575 1014.5386 0.20222 0.00010278 0.51956 0.00026408 0.72177 0.00036686 508.2764905319487 140.31 0.76526 140.31 139.81 140.58 0 35 21 2 0 0 0 0.6199 1 27867 27867 20.871 6.2895 1 5301700 10960 3237 6972 6976 11217 11217 0.03190938211707817 EELHLIVY 8 Unmodified _EELHLIVY_ 0 0 0 ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000485620.1_1_7:6851426-6854399:-|nuORF ENSG00000146574|ENST00000316731|CCZ1B ENSG00000146574|ENST00000316731|CCZ1B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 508.276575 1014.5386 -0.017202 -8.7434E-06 0.31299 0.00015909 0.29579 0.00015034 508.27670497190314 144.87 0.79953 140.21 139.75 140.55 -4.6694 -0.039013 8.5516E-05 NaN 20.871 44 22 3 NaN NaN NaN NaN 0 NaN NaN 0 9068500 10961 3237 6972 6976 0.03190938211707817 EELHLIVY 8 Unmodified _EELHLIVY_ 0 0 0 ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000485620.1_1_7:6851426-6854399:-|nuORF ENSG00000146574|ENST00000316731|CCZ1B ENSG00000146574|ENST00000316731|CCZ1B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 508.276575 1014.5386 -0.27053 -0.0001375 0.13296 6.7582E-05 -0.13757 -6.9922E-05 508.27666836957144 145.33 0.79346 140.26 139.97 140.77 -5.0671 0.018116 -9.7495E-05 NaN 20.871 44 22 3 NaN NaN NaN NaN 0 NaN NaN 0 8756400 10962 3237 6972 6976 0.03190938211707817 EELHLIVY 8 Unmodified _EELHLIVY_ 0 0 0 ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000485620.1_1_7:6851426-6854399:-|nuORF ENSG00000146574|ENST00000316731|CCZ1B ENSG00000146574|ENST00000316731|CCZ1B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 508.276575 1014.5386 0.23405 0.00011896 0.13971 7.1012E-05 0.37376 0.00018997 508.2766134574149 145.15 0.79608 140.2 139.79 140.59 -4.9445 -0.040202 -9.0634E-05 NaN 20.871 38 22 2 NaN NaN NaN NaN 0 NaN NaN 0 4364500 10963 3237 6972 6976 0.03190938211707817 EELHYQAA 8 Unmodified _EELHYQAA_ 0 0 0 ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25286865234375 2 480.724707 959.43486 0.26281 0.00012634 -0.33206 -0.00015963 -0.069248 -3.3289E-05 480.7245284044766 76.931 0.97838 76.931 76.483 77.461 0 68 27 3 0 0 0 0.69887 1 15041 15041 14.582 0 1 6487700 10964 258 6973 6977 11218 11218 -0.04647968895972099 EELHYQAA 8 Unmodified _EELHYQAA_ 0 0 0 ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2415466308594 2 480.724707 959.43486 0.052867 2.5414E-05 0.013418 6.4504E-06 0.066285 3.1865E-05 480.72468045254624 80.782 0.83813 77.225 76.851 77.689 -3.557 61 23 3 0 0 0 0.6199 1 15703 15703 20.871 2.7249 1 7215300 10965 258 6973 6977 11219 11219 -0.04647968895972099 EELIARQLY 9 Unmodified _EELIARQLY_ 0 0 0 REV__B3GALT2|p.S320Ffs*10|1|0.36|ENSG00000162630|chr1:193180604-193180605|-/A|frameshift_variant REV__B3GALT2|p.S320Ffs*10|1|0.36|ENSG00000162630|chr1:193180604-193180605|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 567.9952392578125 2 567.811313 1133.60807 0.351 0.0001993 -0.19497 -0.00011071 0.15604 8.8599E-05 567.8111343826382 148.04 1.2482 142.98 142.46 143.7 -5.0595 123 35 5 0 0 0 0.8204 1 28813 28813 4.756 0 1 81371000 + 10966 13167 6974 6978 11220 11220 0.04661397160475644 EELIARQLY 9 Unmodified _EELIARQLY_ 0 0 0 REV__B3GALT2|p.S320Ffs*10|1|0.36|ENSG00000162630|chr1:193180604-193180605|-/A|frameshift_variant REV__B3GALT2|p.S320Ffs*10|1|0.36|ENSG00000162630|chr1:193180604-193180605|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 567.811313 1133.60807 0.28181 0.00016002 -0.073569 -4.1773E-05 0.20825 0.00011824 567.8111887016175 143.06 0.99899 143.06 142.58 143.58 0 0.05825 -9.6366E-05 NaN 4.756 79 28 4 NaN NaN NaN NaN 0 NaN NaN 0 62561000 + 10967 13167 6974 6978 0.04661397160475644 EELIARQLY 9 Unmodified _EELIARQLY_ 0 0 0 REV__B3GALT2|p.S320Ffs*10|1|0.36|ENSG00000162630|chr1:193180604-193180605|-/A|frameshift_variant REV__B3GALT2|p.S320Ffs*10|1|0.36|ENSG00000162630|chr1:193180604-193180605|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 567.811313 1133.60807 -0.033318 -1.8918E-05 0.1882 0.00010686 0.15488 8.7945E-05 567.8112870672716 147.66 1.6298 142.95 142.27 143.9 -4.7095 -0.059669 0.00020091 NaN 4.756 131 46 5 NaN NaN NaN NaN 0 NaN NaN 0 111860000 + 10968 13167 6974 6978 0.04661397160475644 EELIARQLY 9 Unmodified _EELIARQLY_ 0 0 0 REV__B3GALT2|p.S320Ffs*10|1|0.36|ENSG00000162630|chr1:193180604-193180605|-/A|frameshift_variant REV__B3GALT2|p.S320Ffs*10|1|0.36|ENSG00000162630|chr1:193180604-193180605|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 567.811313 1133.60807 0.10681 6.0649E-05 0.041738 2.3699E-05 0.14855 8.4348E-05 567.8113142460409 148.19 1.0987 143.03 142.55 143.65 -5.1558 0.024506 3.4579E-05 NaN 4.756 96 30 4 NaN NaN NaN NaN 0 NaN NaN 0 72277000 + 10969 13167 6974 6978 0.04661397160475644 EELIFRYL 8 Unmodified _EELIFRYL_ 0 0 0 LONRF2|p.L504M|1|0.21|ENSG00000170500|chr2:100295520-100295520|G/T|missense_variant;nc|ENSG00000170500|Q1L5Z9-2|LONRF2;ENSG00000170500|ENST00000393437|LONRF2 LONRF2|p.L504M|1|0.21|ENSG00000170500|chr2:100295520-100295520|G/T|missense_variant LONRF2|p.L504M|1|0.21|ENSG00000170500|chr2:100295520-100295520|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2743530273438 2 541.797675 1081.5808 0.71122 0.00038534 -0.5447 -0.00029512 0.16652 9.0221E-05 542.2989230542894 78.52 0.48996 78.52 78.225 78.715 0 24 13 2 0 0 0 0.98792 1 15285 15285 14.582 5.1986 1 2206800 10970 6074 6975 6979 11221 11221 0.04326913620070627 EELISSPSV 9 Unmodified _EELISSPSV_ 0 0 0 REV__nc|ENSG00000162692|P19320-2|VCAM1 REV__nc|ENSG00000162692|P19320-2|VCAM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2491760253906 2 480.747847 959.481142 -0.17367 -8.349E-05 0.011545 5.5501E-06 -0.16212 -7.794E-05 480.74778982841497 79.771 1.6057 76.095 75.548 77.153 -3.676 122 45 4 0 0 0 0.35443 1 15311 15311 28.487 1.6032 1 94578000 + 10971 17519 6976 6980 11222 11222 -0.00021948784512915154 EELIVELRLF 10 Unmodified _EELIVELRLF_ 0 0 0 ENSG00000196526|ENST00000420658|AFAP1;nc|ENSG00000196526|Q8N556|AFAP1 ENSG00000196526|ENST00000420658|AFAP1 ENSG00000196526|ENST00000420658|AFAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.77783203125 2 630.863546 1259.71254 NaN NaN NaN NaN NaN NaN NaN 152.75 1 152.75 152.25 153.25 0 0 0 0 0.22588 1 30600 30600 6.7232 0.51738 1 10972 7278 6977 6981 11223 11223 0.09307098917179246 EELKAKEI 8 Unmodified _EELKAKEI_ 0 0 0 ENSG00000198920|ENST00000361413|KIAA0753;nc|ENSG00000198920|Q2KHM9-2|KIAA0753;KIAA0753|p.K638Nfs*18|1|0.33|ENSG00000198920|chr17:6607186-6607186|T/-|frameshift_variant ENSG00000198920|ENST00000361413|KIAA0753 ENSG00000198920|ENST00000361413|KIAA0753 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2430725097656 2 480.274032 958.533512 0.021288 1.0224E-05 -0.61253 -0.00029418 -0.59124 -0.00028396 480.2735401624974 77.584 0.71242 74.12 73.683 74.396 -3.4633 34 19 3 0 0 0 0.64227 1 15147 15147 19.439 0 1 2080500 10973 7527 6978 6982 11224 11224 0.05258634349092972 EELKAKEI 8 Unmodified _EELKAKEI_ 0 0 0 ENSG00000198920|ENST00000361413|KIAA0753;nc|ENSG00000198920|Q2KHM9-2|KIAA0753;KIAA0753|p.K638Nfs*18|1|0.33|ENSG00000198920|chr17:6607186-6607186|T/-|frameshift_variant ENSG00000198920|ENST00000361413|KIAA0753 ENSG00000198920|ENST00000361413|KIAA0753 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.274032 958.533512 0.022202 1.0663E-05 -1.4392 -0.00069123 -1.417 -0.00068057 480.2734351558599 77.98 0.5602 74.214 73.93 74.49 -3.7664 0.046726 -0.00066079 NaN 19.439 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1461400 10974 7527 6978 6982 0.05258634349092972 EELKDGKIY 9 Unmodified _EELKDGKIY_ 0 0 0 REV__ENSG00000198108|ENST00000305031|CHSY3 REV__ENSG00000198108|ENST00000305031|CHSY3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7904663085938 2 547.790047 1093.56554 0.64473 0.00035318 0.11158 6.1124E-05 0.75632 0.0004143 547.7900934995405 104.36 0.58131 104.36 104.07 104.65 0 25 16 2 0 0 0 0.12183 2 20517 20517;20565 48.346 7.6518 1 1240700 + 10975 19391 6979 6983 11225;11226 11225 0.022500020322468117 EELKDGKIY 9 Unmodified _EELKDGKIY_ 0 0 0 REV__ENSG00000198108|ENST00000305031|CHSY3 REV__ENSG00000198108|ENST00000305031|CHSY3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.790047 1093.56554 -0.11739 -6.4303E-05 0.39404 0.00021585 0.27666 0.00015155 547.7901988447297 108.92 0.73183 104.47 104.08 104.82 -4.4518 0.069836 0.00010138 NaN 48.346 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3199900 + 10976 19391 6979 6983 0.022500020322468117 EELKELKEY 9 Unmodified _EELKELKEY_ 0 0 0 tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1;ENSG00000172775|ENST00000309137|PSME3IP1 tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1 tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2718505859375 2 590.808436 1179.60232 0.49731 0.00029381 -0.34989 -0.00020672 0.14742 8.7098E-05 590.8082813410296 60.854 0.48933 57.921 57.644 58.134 -2.9333 28 13 3 0 0 0 0.33201 1 11678 11678 49.527 22.304 1 2854000 10977 6239 6980 6984 11227 11227 0.01970253858144133 EELKELKEY 9 Unmodified _EELKELKEY_ 0 0 0 tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1;ENSG00000172775|ENST00000309137|PSME3IP1 tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1 tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2510986328125 2 590.808436 1179.60232 0.51083 0.0003018 -0.48598 -0.00028712 0.024852 1.4683E-05 590.8081370899345 61.249 0.52796 57.879 57.584 58.112 -3.3694 22 14 2 0 0 0 0.027793 1 11440 11440 104.48 48.982 1 2260400 10978 6239 6980 6984 11228 11228 0.01970253858144133 EELKELKEY 9 Unmodified _EELKELKEY_ 0 0 0 tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1;ENSG00000172775|ENST00000309137|PSME3IP1 tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1 tr|U7SU84|U7SU84_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01140PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 590.808436 1179.60232 0.079291 4.6846E-05 0.52465 0.00030996 0.60394 0.00035681 590.8086143837819 57.986 0.52749 57.986 57.718 58.246 0 0.063933 0.00067637 NaN 104.48 28 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1818200 10979 6239 6980 6984 0.01970253858144133 EELKELSQRYV 11 Unmodified _EELKELSQRYV_ 0 0 0 REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2504577636719 3 465.248908 1392.72489 NaN NaN NaN NaN NaN NaN NaN 72.532 1 72.532 72.032 73.032 0 0 0 0 0.22632 1 14067 14067 1.4551 1.4289 1 + 10980 13369 6981 6985 11229 11229 0.044240905895549076 EELKKMLA 8 Unmodified _EELKKMLA_ 0 0 0 REV__ENSG00000173320|ENST00000308497|STOX2 REV__ENSG00000173320|ENST00000308497|STOX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7747497558594 2 481.272978 960.531403 0.22903 0.00011023 -0.14555 -7.005E-05 0.083482 4.0178E-05 481.27290336851524 75.089 0.55371 71.495 71.235 71.789 -3.594 26 15 2 0 0 0 0.60622 1 14248 14248 21.747 0 1 2879100 + 10981 18350 6982 6986 11230 11230 0.04955882339618256 EELKLEHLA 9 Unmodified _EELKLEHLA_ 0 0 0 REV__ENSG00000113845|ENST00000494664|TIMMDC1 REV__ENSG00000113845|ENST00000494664|TIMMDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.282958984375 2 541.298039 1080.58152 0.18914 0.00010238 -0.33613 -0.00018195 -0.14699 -7.9565E-05 541.297740706468 83.716 0.69545 80.108 79.726 80.422 -3.6079 28 19 2 0 0 0 0.54354 1 16416 16416 16.942 0 1 2926700 + 10982 15355 6983 6987 11231 11231 0.04445708269122406 EELKMSKP 8 Unmodified _EELKMSKP_ 0 0 0 ENST00000409195.5_2_2:168108454-168115870:+|nuORF;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2 ENST00000409195.5_2_2:168108454-168115870:+|nuORF ENST00000409195.5_2_2:168108454-168115870:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2546081542969 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 80.161 1 76.651 76.151 77.151 -3.5102 0 0 0 0.19954 1 15654 15654 24.674 0 1 10983 9561 6984 6988 11232 11232 0.013190054429287557 EELKQRFKDYK 11 Unmodified _EELKQRFKDYK_ 0 0 0 REV__nc|ENSG00000266094|Q8WWW0-2|RASSF5 REV__nc|ENSG00000266094|Q8WWW0-2|RASSF5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.400390625 2 742.398815 1482.78308 NaN NaN NaN NaN NaN NaN NaN 154.63 1 149.35 148.85 149.85 -5.2854 0 0 0 0.2321 1 29985 29985 6.6304 1.3335 1 + 10984 19901 6985 6989 11233 11233 0.06099772234847478 EELKRLHRA 9 Unmodified _EELKRLHRA_ 0 0 0 ENSG00000243156|ENST00000441493|MICAL3 ENSG00000243156|ENST00000441493|MICAL3 ENSG00000243156|ENST00000441493|MICAL3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3338623046875 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 47.265 1 44.396 43.896 44.896 -2.869 0 0 0 0.22251 1 8926 8926 16.942 3.8998 1 10985 7870 6986 6990 11234 11234 0.08778730240078403 EELKRLHRA 9 Unmodified _EELKRLHRA_ 0 0 0 ENSG00000243156|ENST00000441493|MICAL3 ENSG00000243156|ENST00000441493|MICAL3 ENSG00000243156|ENST00000441493|MICAL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3336791992188 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 47.182 1 44.24 43.74 44.74 -2.9421 0 0 0 0.22251 1 8594 8594 16.942 0.79319 1 10986 7870 6986 6990 11235 11235 0.08778730240078403 EELKRLHRA 9 Unmodified _EELKRLHRA_ 0 0 0 ENSG00000243156|ENST00000441493|MICAL3 ENSG00000243156|ENST00000441493|MICAL3 ENSG00000243156|ENST00000441493|MICAL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3343505859375 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 47.412 1 44.47 43.97 44.97 -2.9421 0 0 0 0.22251 1 8644 8644 16.942 0.79319 1 10987 7870 6986 6990 11236 11236 0.08778730240078403 EELKRLHRA 9 Unmodified _EELKRLHRA_ 0 0 0 ENSG00000243156|ENST00000441493|MICAL3 ENSG00000243156|ENST00000441493|MICAL3 ENSG00000243156|ENST00000441493|MICAL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3348388671875 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 47.165 1 44.215 43.715 44.715 -2.9499 0 0 0 0.22251 1 8604 8604 16.942 4.4107 1 10988 7870 6986 6990 11237 11237 0.08778730240078403 EELKVKAY 8 Unmodified _EELKVKAY_ 0 0 0 nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;ENST00000465980.1_1_3:112262891-112280447:-|nuORF nc|ENSG00000144848|Q9NT62-2|ATG3 nc|ENSG00000144848|Q9NT62-2|ATG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27520751953125 2 490.276575 978.538597 -0.083954 -4.1161E-05 -0.021676 -1.0627E-05 -0.10563 -5.1788E-05 490.2763197484059 52.622 0.40691 49.738 49.522 49.929 -2.8837 16 11 2 0 0 0 0.52597 2 9995 9995;10016 26.884 8.7373 1 811990 10989 4582 6987 6991 11238;11239 11238 0.048469382116991255 EELKVKAY 8 Unmodified _EELKVKAY_ 0 0 0 nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;ENST00000465980.1_1_3:112262891-112280447:-|nuORF nc|ENSG00000144848|Q9NT62-2|ATG3 nc|ENSG00000144848|Q9NT62-2|ATG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2761535644531 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 52.72 1 49.632 49.132 50.132 -3.0876 0 0 0 0.17841 1 9698 9698 32.305 1.6689 1 10990 4582 6987 6991 11240 11240 0.048469382116991255 EELLEKTV 8 Unmodified _EELLEKTV_ 0 0 0 ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1 ENST00000511494.5_1_5:134670668-134681802:-|nuORF ENST00000511494.5_1_5:134670668-134681802:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7682800292969 2 480.76604 959.517527 0.18591 8.9379E-05 -0.26508 -0.00012744 -0.079166 -3.806E-05 480.76582519360136 106.95 0.62768 106.95 106.61 107.24 0 34 17 3 0 0 0 0.64227 1 21021 21021 19.439 0 1 5766400 10991 2756 6988 6992 11241 11241 0.03614928112187954 EELLKNSVY 9 Unmodified _EELLKNSVY_ 0 0 0 REV__NONO|p.E162K|1|0.63|ENSG00000147140|chrX:71294362-71294362|G/A|missense_variant REV__NONO|p.E162K|1|0.63|ENSG00000147140|chrX:71294362-71294362|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7914428710938 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 104.17 1 104.17 103.67 104.67 0 0 0 0 0.20155 1 20473 20473 23.148 1.4018 1 + 10992 24375 6989 6993 11242 11242 0.022500020322468117 EELLKNSVY 9 Unmodified _EELLKNSVY_ 0 0 0 REV__NONO|p.E162K|1|0.63|ENSG00000147140|chrX:71294362-71294362|G/A|missense_variant REV__NONO|p.E162K|1|0.63|ENSG00000147140|chrX:71294362-71294362|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7916870117188 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 145.4 1 145.4 144.9 145.9 0 0 0 0 0.20628 1 29056 29056 21.747 0.20967 1 + 10993 24375 6989 6993 11243 11243 0.022500020322468117 EELLLNSY 8 Unmodified _EELLLNSY_ 0 0 0 REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1 REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26373291015625 2 490.75039 979.486227 0.18168 8.9158E-05 -0.14615 -7.1721E-05 0.035532 1.7437E-05 490.75026329416227 119.15 0.83348 119.15 118.78 119.62 0 68 23 4 0 0 0 0.059776 1 23515 23515 112.59 0 1 14197000 + 10994 24970 6990 6994 11244 11244 -0.004336449219067617 EELLLNSY 8 Unmodified _EELLLNSY_ 0 0 0 REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1 REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25555419921875 2 490.75039 979.486227 0.27816 0.00013651 -0.11627 -5.7059E-05 0.16189 7.9448E-05 490.7502425199196 123.92 0.9167 119.35 118.95 119.87 -4.5757 74 25 4 0 0 0 0.15314 1 24407 24407 85.357 0 1 16015000 + 10995 24970 6990 6994 11245 11245 -0.004336449219067617 EELLTDLF 8 Unmodified _EELLTDLF_ 0 0 0 REV__ENST00000477322.1_1_1:92798926-92846428:+|nuORF REV__ENST00000477322.1_1_1:92798926-92846428:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25860595703125 2 490.252766 978.490978 NaN NaN NaN NaN NaN NaN NaN 134.97 1 130.15 129.65 130.65 -4.8175 0 0 0 0.2074 1 25983 25983 19.439 0 1 + 10996 15692 6991 6995 11246 11246 0.0008723922085209779 EELLTDLF 8 Unmodified _EELLTDLF_ 0 0 0 REV__ENST00000477322.1_1_1:92798926-92846428:+|nuORF REV__ENST00000477322.1_1_1:92798926-92846428:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25274658203125 2 490.252766 978.490978 NaN NaN NaN NaN NaN NaN NaN 135.03 1 130.21 129.71 130.71 -4.8238 0 0 0 0.2074 1 25997 25997 19.439 0 1 + 10997 15692 6991 6995 11247 11247 0.0008723922085209779 EELMAVRI 8 Unmodified _EELMAVRI_ 0 0 0 REV__ENSG00000015676|ENST00000355451|NUDCD3 REV__ENSG00000015676|ENST00000355451|NUDCD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7654113769531 2 480.762778 959.511002 -0.072503 -3.4857E-05 0.0076192 3.663E-06 -0.064884 -3.1194E-05 480.7628676290066 70.263 0.73946 67.014 66.686 67.425 -3.2492 40 20 3 0 0 0 0.66265 1 13655 13655 18.135 0 1 4832500 + 10998 13963 6992 6996 11248 11248 0.02962711679822405 EELMEKWTKGK 11 Unmodified _EELMEKWTKGK_ 0 0 0 REV__tr|U7SLF7|U7SLF7_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01916PE=4SV=1 REV__tr|U7SLF7|U7SLF7_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01916PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.239501953125 3 460.239355 1377.69624 NaN NaN NaN NaN NaN NaN NaN 68.198 1 64.807 64.307 65.307 -3.3903 0 0 0 0.22632 1 12870 12870 0.03141 0 1 + 10999 24944 6993 6997 11249 11249 0.02249649688747013 EELNKLFNS 9 Unmodified _EELNKLFNS_ 0 0 0 REV__ENST00000510379.1_1_4:148653338-148778808:+|nuORF REV__ENST00000510379.1_1_4:148653338-148778808:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7849731445312 2 547.279846 1092.54514 0.6673 0.0003652 0.80726 0.0004418 1.4746 0.00080699 547.7819615596186 77.782 0.72989 77.782 77.392 78.122 0 42 20 3 0 0 0 0.52396 1 15075 15075 18.146 1.0335 1 3331200 + 11000 13097 6994 6998 11250 11250 0.002568313724395921 EELNSLSGL 9 Unmodified _EELNSLSGL_ 0 0 0 REV__nc|ENSG00000249437|Q13075-2|NAIP REV__nc|ENSG00000249437|Q13075-2|NAIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2549743652344 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 26.062 1 24.347 23.847 24.847 -1.7156 0 0 0 0.21469 1 4587 4587 19.257 1.1106 1 + 11001 19821 6995 6999 11251 11251 -0.0054283292729451205 EELNVNPG 8 Unmodified _EELNVNPG_ 0 0 0 REV__nc|ENSG00000136689|P18510-4|IL1RN REV__nc|ENSG00000136689|P18510-4|IL1RN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2145080566406 2 436.211432 870.408311 0.30294 0.00013215 -0.096483 -4.2087E-05 0.20646 9.006E-05 436.21139765912926 30.643 1.0226 28.526 28.011 29.033 -2.1167 62 28 3 0 0 0 0.72861 1 5550 5550 10.183 0 1 1320500 + 11002 16342 6996 7000 11252 11252 -0.03207657787288554 EELNVNPG 8 Unmodified _EELNVNPG_ 0 0 0 REV__nc|ENSG00000136689|P18510-4|IL1RN REV__nc|ENSG00000136689|P18510-4|IL1RN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 436.211432 870.408311 0.2838 0.0001238 0.21189 9.243E-05 0.4957 0.00021623 436.21157015747275 30.441 1.1624 28.548 28.134 29.297 -1.8928 0.011067 0.000166 NaN 10.183 49 32 2 NaN NaN NaN NaN 0 NaN NaN 0 1249900 + 11003 16342 6996 7000 -0.03207657787288554 EELPDIAPP 9 Unmodified _EELPDIAPP_ 0 0 0 USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25604248046875 2 490.75039 979.486227 0.18486 9.072E-05 0.17836 8.7529E-05 0.36322 0.00017825 490.7504052722401 122.04 1.17 122.04 121.44 122.61 0 74 33 3 0 0 0 0.091177 1 24097 24097 70.716 22.37 1 17722000 11004 2632 6997 7001 11253 11253 -0.004336449219181304 EELPDIAPP 9 Unmodified _EELPDIAPP_ 0 0 0 USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2557678222656 2 490.75039 979.486227 0.19964 9.7974E-05 0.32381 0.00015891 0.52345 0.00025688 490.75037808695623 126.8 0.87578 122.19 121.73 122.61 -4.6172 69 24 4 0 0 0 0.064469 1 25039 25039 77.984 27.129 1 16632000 11005 2632 6997 7001 11254 11254 -0.004336449219181304 EELPDIAPP 9 Unmodified _EELPDIAPP_ 0 0 0 USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.271728515625 2 490.75039 979.486227 0.30683 0.00015058 0.18396 9.0278E-05 0.49079 0.00024086 490.75032057244573 127.05 0.99477 122.26 121.7 122.7 -4.7958 75 27 4 0 0 0 0.064469 1 24392 24392 77.984 13.748 1 13404000 11006 2632 6997 7001 11255 11255 -0.004336449219181304 EELPDIAPP 9 Unmodified _EELPDIAPP_ 0 0 0 USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25823974609375 2 490.75039 979.486227 -0.062117 -3.0484E-05 0.44942 0.00022055 0.3873 0.00019007 490.75047590686444 126.93 0.92265 122.23 121.76 122.68 -4.6998 77 25 4 0 0 0 0.037229 1 24425 24425 85.357 37.011 1 16787000 11007 2632 6997 7001 11256 11256 -0.004336449219181304 EELPHIHAF 9 Unmodified _EELPHIHAF_ 0 0 0 ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B ENST00000567436.1_1_16:30204298-30204508:-|nuORF ENST00000567436.1_1_16:30204298-30204508:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7799072265625 2 546.777274 1091.53999 0.65342 0.00035728 -0.50715 -0.0002773 0.14627 7.9978E-05 546.7769574906913 104.18 1.1097 104.18 103.69 104.79 0 98 31 4 0 0 0 0.034076 2 20512 20467;20512 78.445 44.342 1 51957000 11008 5995 6998 7002 11257;11258 11258 -0.002114276995371256 EELPHIHAF 9 Unmodified _EELPHIHAF_ 0 0 0 ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B ENST00000567436.1_1_16:30204298-30204508:-|nuORF ENST00000567436.1_1_16:30204298-30204508:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7801513671875 2 546.777274 1091.53999 -0.31444 -0.00017193 0.40219 0.00021991 0.087749 4.7979E-05 546.7774577072882 108.26 1.041 103.94 103.52 104.56 -4.32 90 29 4 0 0 0 0.11795 2 21286 21286;21336 49.669 49.669 1 42284000 11009 5995 6998 7002 11259;11260 11259 -0.002114276995371256 EELPHIHAF 9 Unmodified _EELPHIHAF_ 0 0 0 ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B ENST00000567436.1_1_16:30204298-30204508:-|nuORF ENST00000567436.1_1_16:30204298-30204508:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7800903320312 2 546.777274 1091.53999 -0.083159 -4.5469E-05 0.31309 0.00017119 0.22993 0.00012572 546.7774370460934 108.37 1.0317 103.95 103.47 104.5 -4.4121 99 29 5 0 0 0 0.11795 2 20777 20777;20823 49.669 31.534 1 46474000 11010 5995 6998 7002 11261;11262 11261 -0.002114276995371256 EELPHIHAF 9 Unmodified _EELPHIHAF_ 0 0 0 ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B ENST00000567436.1_1_16:30204298-30204508:-|nuORF ENST00000567436.1_1_16:30204298-30204508:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7801513671875 2 546.777274 1091.53999 0.76373 0.00041759 -0.50397 -0.00027556 0.25976 0.00014203 546.7769900990857 107.94 1.2524 103.8 103.39 104.64 -4.135 99 35 4 0 0 0 0.11795 3 20746 20746;20791;20801 49.669 31.534 1 50795000 11011 5995 6998 7002 11263;11264;11265 11263 -0.002114276995371256 EELPPCYE 8 Unmodified _EELPPCYE_ 0 0 0 nc|ENSG00000136720|O60243-2|HS6ST1;ENSG00000136720|ENST00000259241|HS6ST1 nc|ENSG00000136720|O60243-2|HS6ST1 nc|ENSG00000136720|O60243-2|HS6ST1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2555236816406 2 490.207501 978.400449 NaN NaN NaN NaN NaN NaN NaN 128.16 1 123.35 122.85 123.85 -4.817 0 0 0 0.21486 1 24605 24605 9.3474 0 1 11012 4033 6999 7003 11266 11266 -0.08961553099084085 EELQKIYKT 9 Unmodified _EELQKIYKT_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3189697265625 2 576.318971 1150.62339 0.57265 0.00033003 -0.56954 -0.00032823 0.0031099 1.7923E-06 576.3185757495548 44.331 0.68813 44.331 43.951 44.639 0 48 19 3 0 0 0 4.5222E-12 5 8306 8260;8283;8303;8306;8356 162.31 85.49 1 14960000 11013 3916 7000 7004 11267;11268;11269;11270;11271 11270 0.054102639576512956 EELQKIYKT 9 Unmodified _EELQKIYKT_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3187866210938 2 576.318971 1150.62339 -0.036761 -2.1186E-05 0.10536 6.0721E-05 0.0686 3.9536E-05 576.3189921427542 47.249 0.62287 44.38 44.012 44.635 -2.869 55 17 4 0 0 0 1.8901E-05 4 8910 8866;8908;8910;8953 135.86 88.269 1 19582000 11014 3916 7000 7004 11272;11273;11274;11275 11274 0.054102639576512956 EELQKIYKT 9 Unmodified _EELQKIYKT_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3189697265625 2 576.318971 1150.62339 0.11225 6.469E-05 0.078535 4.5261E-05 0.19078 0.00010995 576.3189489590478 47.366 0.61998 44.424 44.066 44.686 -2.9421 56 17 4 0 0 0 4.7307000000000005E-24 2 8609 8609;8662 177.58 105.65 1 23091000 11015 3916 7000 7004 11276;11277 11276 0.054102639576512956 EELQKIYKT 9 Unmodified _EELQKIYKT_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3190307617188 2 576.318971 1150.62339 -0.082816 -4.7728E-05 0.23109 0.00013318 0.14827 8.5453E-05 576.3190559253896 47.337 0.62125 44.387 44.087 44.708 -2.9499 56 17 4 0 0 0 1.3899E-16 3 8650 8599;8647;8650 165.58 119.88 1 16653000 11016 3916 7000 7004 11278;11279;11280 11280 0.054102639576512956 EELQLHFTY 9 Unmodified _EELQLHFTY_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;ENST00000418472.6_1_18:46856042-46938282:-|nuORF;ENST00000578396.1_1_18:46902050-46905018:-|nuORF nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2518920898438 2 590.287671 1178.56079 NaN NaN NaN NaN NaN NaN NaN 148.09 1 142.93 142.43 143.43 -5.1557 0 0 0 0.11195 1 28663 28663 36.127 15.673 1 11017 4388 7001 7005 11281 11281 -0.021348821104993476 EELQLHFTY 9 Unmodified _EELQLHFTY_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;ENST00000418472.6_1_18:46856042-46938282:-|nuORF;ENST00000578396.1_1_18:46902050-46905018:-|nuORF nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2708740234375 2 590.287671 1178.56079 NaN NaN NaN NaN NaN NaN NaN 148.15 1 143 142.5 143.5 -5.1557 0 0 0 0.18489 1 28678 28678 30.703 29.489 1 11018 4388 7001 7005 11282 11282 -0.021348821104993476 EELQLHFTY 9 Unmodified _EELQLHFTY_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;ENST00000418472.6_1_18:46856042-46938282:-|nuORF;ENST00000578396.1_1_18:46902050-46905018:-|nuORF nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2708740234375 2 590.287671 1178.56079 NaN NaN NaN NaN NaN NaN NaN 148.16 1 143.01 142.51 143.51 -5.1557 0 0 0 0.19721 1 28680 28680 24.021 0.87215 1 11019 4388 7001 7005 11283 11283 -0.021348821104993476 EELQLHFTY 9 Unmodified _EELQLHFTY_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;ENST00000418472.6_1_18:46856042-46938282:-|nuORF;ENST00000578396.1_1_18:46902050-46905018:-|nuORF nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.27392578125 2 590.287671 1178.56079 NaN NaN NaN NaN NaN NaN NaN 147.83 1 142.77 142.27 143.27 -5.0595 0 0 0 0.070386 1 28625 28625 43.858 19.838 1 11020 4388 7001 7005 11284 11284 -0.021348821104993476 EELQRLAQG 9 Unmodified _EELQRLAQG_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2794799804688 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 45.234 1 42.369 41.869 42.869 -2.8653 0 0 0 0.23508 1 8208 8208 10.074 1.3285 1 11021 6567 7002 7006 11285 11285 0.021153669495106442 EELQRTPLP 9 Unmodified _EELQRTPLP_ 0 0 0 ENST00000215917.11_2_22:26887676-26887766:+|nuORF ENST00000215917.11_2_22:26887676-26887766:+|nuORF ENST00000215917.11_2_22:26887676-26887766:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.26220703125 2 541.795663 1081.57677 0.32996 0.00017877 -1.0808 -0.00058559 -0.75087 -0.00040682 541.7951949753773 73.114 1.4691 73.114 72.613 74.082 0 107 41 4 0 0 0 0.10378 1 14162 14162 65.474 37.845 1 11787000 11022 8103 7003 7007 11286 11286 0.03924824126374915 EELQRTPLP 9 Unmodified _EELQRTPLP_ 0 0 0 ENST00000215917.11_2_22:26887676-26887766:+|nuORF ENST00000215917.11_2_22:26887676-26887766:+|nuORF ENST00000215917.11_2_22:26887676-26887766:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2632446289062 2 541.795663 1081.57677 0.09313 5.0457E-05 -1.0075 -0.00054584 -0.91434 -0.00049539 541.7951693335071 77.117 1.3951 73.351 72.678 74.073 -3.7664 103 39 4 0 0 0 0.14943 1 14554 14554 53.404 41.163 1 11521000 11023 8103 7003 7007 11287 11287 0.03924824126374915 EELQRTPLP 9 Unmodified _EELQRTPLP_ 0 0 0 ENST00000215917.11_2_22:26887676-26887766:+|nuORF ENST00000215917.11_2_22:26887676-26887766:+|nuORF ENST00000215917.11_2_22:26887676-26887766:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.795663 1081.57677 0.19444 0.00010535 -1.2265 -0.00066452 -1.0321 -0.00055917 541.7951787244074 76.729 1.2673 73.314 72.715 73.982 -3.4151 0.060308 -8.6264E-05 NaN 65.474 84 35 4 NaN NaN NaN NaN 0 NaN NaN 0 15248000 11024 8103 7003 7007 0.03924824126374915 EELQRTPLP 9 Unmodified _EELQRTPLP_ 0 0 0 ENST00000215917.11_2_22:26887676-26887766:+|nuORF ENST00000215917.11_2_22:26887676-26887766:+|nuORF ENST00000215917.11_2_22:26887676-26887766:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 541.795663 1081.57677 0.21349 0.00011567 -1.2766 -0.00069166 -1.0631 -0.00057599 541.7950215269464 76.88 1.3675 73.236 72.739 74.107 -3.6438 -0.01767 -0.00014053 NaN 65.474 88 38 3 NaN NaN NaN NaN 0 NaN NaN 0 16293000 11025 8103 7003 7007 0.03924824126374915 EELQSLSKM 9 Unmodified _EELQSLSKM_ 0 0 0 ENSG00000204671|ENST00000377035|IL31 ENSG00000204671|ENST00000377035|IL31 ENSG00000204671|ENST00000377035|IL31 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.264404296875 2 532.768257 1063.52196 -0.057721 -3.0752E-05 0.52969 0.0002822 0.47197 0.00025145 532.768503022555 17.297 0.3777 16.024 15.835 16.213 -1.2722 16 10 3 0 0 0 0.87511 1 2561 2561 7.2892 0 1 1829200 11026 7604 7004 7008 11288 11288 -0.007259307365302448 EELRAALA 8 Unmodified _EELRAALA_ 0 0 0 N4BP3|p.Y248Tfs*50|2|0.19|ENSG00000145911|chr5:178120583-178120583|C/-|frameshift_variant;ENSG00000145911|ENST00000274605|N4BP3 N4BP3|p.Y248Tfs*50|2|0.19|ENSG00000145911|chr5:178120583-178120583|C/-|frameshift_variant N4BP3|p.Y248Tfs*50|2|0.19|ENSG00000145911|chr5:178120583-178120583|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2288818359375 2 436.745442 871.476331 0.018298 7.9917E-06 -0.59229 -0.00025868 -0.574 -0.00025069 436.7451376853925 71.146 0.72958 71.146 70.834 71.564 0 29 20 2 0 0 0 8448 1 13752 13752 13.615 4.0709 1 2351400 11027 4628 7005 7009 11289 11289 0.03545211863354325 EELRDKYL 8 Unmodified _EELRDKYL_ 0 0 0 CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant;ENSG00000198286|ENST00000396946|CARD11 CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2823486328125 2 533.282389 1064.55022 0.067801 3.6157E-05 0.2287 0.00012196 0.2965 0.00015812 533.2824926249845 86.162 1.3353 86.162 85.539 86.875 0 96 37 4 0 0 0 0.40222 2 16799 16799;16845 32.305 10.715 1 8528100 11028 388 7006 7010 11290;11291 11290 0.02053135235018999 EELRDKYL 8 Unmodified _EELRDKYL_ 0 0 0 CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant;ENSG00000198286|ENST00000396946|CARD11 CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.282470703125 2 533.282389 1064.55022 0.7283 0.00038839 -0.59581 -0.00031774 0.13248 7.065E-05 533.2820797917628 90.257 1.4822 86.213 85.519 87.001 -4.0443 117 41 4 0 0 0 0.40222 1 17181 17181 32.305 5.0823 1 10278000 11029 388 7006 7010 11292 11292 0.02053135235018999 EELRDKYL 8 Unmodified _EELRDKYL_ 0 0 0 CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant;ENSG00000198286|ENST00000396946|CARD11 CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant CARD11|p.R555Gfs*45|6|0.44|ENSG00000198286|chr7:2928689-2928689|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2823486328125 2 533.282389 1064.55022 0.23043 0.00012289 -0.12183 -6.4969E-05 0.1086 5.7916E-05 533.2823100455149 89.907 1.4737 86.129 85.484 86.958 -3.7779 122 41 4 0 0 0 0.40222 2 17183 17183;17230 32.305 5.0823 1 11397000 11030 388 7006 7010 11293;11294 11293 0.02053135235018999 EELRDYVKA 9 Unmodified _EELRDYVKA_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;ENST00000555204.1_1_14:102486373-102493771:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2117004394531 3 374.864506 1121.57169 -0.19424 -7.2812E-05 -0.15954 -5.9806E-05 -0.35377 -0.00013262 374.8644032307395 64.075 0.66285 61.077 60.697 61.36 -2.9975 43 18 3 0 0 0 0.47592 1 12363 12363 19.626 14.729 1 3983500 11031 899 7007 7011 11295 11295 0.0157652026375672 EELRDYVKA 9 Unmodified _EELRDYVKA_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;ENST00000555204.1_1_14:102486373-102493771:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2124938964844 3 374.864506 1121.57169 0.2088 7.827E-05 -0.44305 -0.00016608 -0.23426 -8.7814E-05 374.86427004348246 64.606 0.53177 61.148 60.872 61.404 -3.4581 35 14 3 0 0 0 0.47592 1 12061 12061 17.113 12.216 1 3226000 11032 899 7007 7011 11296 11296 0.0157652026375672 EELRDYVKA 9 Unmodified _EELRDYVKA_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;ENST00000555204.1_1_14:102486373-102493771:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21221923828125 3 374.864506 1121.57169 -0.40214 -0.00015075 0.09601 3.5991E-05 -0.30613 -0.00011476 374.86449394481747 64.322 0.66639 61.066 60.711 61.377 -3.2567 43 18 3 0 0 0 0.15889 1 12082 12082 37.075 26.924 1 3077300 11033 899 7007 7011 11297 11297 0.0157652026375672 EELRDYVKA 9 Unmodified _EELRDYVKA_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;ENST00000555204.1_1_14:102486373-102493771:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 374.864506 1121.57169 -0.47311 -0.00017735 -0.013083 -4.9044E-06 -0.4862 -0.00018226 374.86453092128045 61.161 0.45076 61.161 60.874 61.325 0 0.047903 0.00013305 NaN 37.075 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1916500 11034 899 7007 7011 0.0157652026375672 EELREQKY 8 Unmodified _EELREQKY_ 0 0 0 REV__ENSG00000167721|ENST00000301364|TSR1 REV__ENSG00000167721|ENST00000301364|TSR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7748413085938 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 35.319 1 35.319 34.819 35.819 0 0 0 0 0.21323 1 6480 6480 14.582 0.67564 1 + 11035 17962 7008 7012 11298 11298 -0.0026405277033063612 EELREQKY 8 Unmodified _EELREQKY_ 0 0 0 REV__ENSG00000167721|ENST00000301364|TSR1 REV__ENSG00000167721|ENST00000301364|TSR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.775634765625 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 43.236 1 40.517 40.017 41.017 -2.7191 0 0 0 0.20135 1 8100 8100 24.021 2.2739 1 + 11036 17962 7008 7012 11299 11299 -0.0026405277033063612 EELRKTNA 8 Unmodified _EELRKTNA_ 0 0 0 ENSG00000108242|ENST00000285979|CYP2C18;nc|ENSG00000108242|P33260-2|CYP2C18 ENSG00000108242|ENST00000285979|CYP2C18 ENSG00000108242|ENST00000285979|CYP2C18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2540588378906 2 480.759081 959.503609 0.068034 3.2708E-05 0.69739 0.00033527 0.76542 0.00036798 480.7595819079031 51.96 0.80851 48.915 48.368 49.177 -3.0453 46 22 3 0 0 0 0.44108 1 9512 9512 30.637 1.555 1 12581000 11037 2464 7009 7013 11300 11300 0.02223695403745296 EELRLEDY 8 Unmodified _EELRLEDY_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;NUP98|p.F410Lfs*77|1|0.19|ENSG00000110713|chr11:3753404-3753404|A/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-4|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.28662109375 2 533.756204 1065.49785 0.076763 4.0972E-05 -0.21853 -0.00011664 -0.14177 -7.5672E-05 533.7562073528369 93.175 0.55577 89.184 88.864 89.42 -3.9907 22 15 2 0 0 0 0.75825 1 18266 18266 27.629 6.0386 1 2685700 11038 2583;12720;12282 7010 7014 11301 11301 -0.032274478985755195 EELRLEDY 8 Unmodified _EELRLEDY_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;NUP98|p.F410Lfs*77|1|0.19|ENSG00000110713|chr11:3753404-3753404|A/-|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-4|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2841796875 2 533.756204 1065.49785 0.12944 6.9087E-05 -0.17519 -9.3508E-05 -0.045752 -2.442E-05 533.7562241220825 93.04 0.4821 89.196 88.949 89.431 -3.844 18 13 2 0 0 0 0.31943 1 17820 17820 62.573 24.599 1 1497400 11039 2583;12720;12282 7010 7014 11302 11302 -0.032274478985755195 EELRLQIY 8 Unmodified _EELRLQIY_ 0 0 0 TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2864990234375 2 532.292756 1062.57096 -0.034585 -1.8409E-05 0.99033 0.00052715 0.95575 0.00050874 532.2931338967016 44.467 0.45544 41.72 41.499 41.954 -2.7475 29 12 3 0 0 0 0.64227 1 8061 8061 19.439 0.18201 1 2513000 11040 25822 7011 7015 11303 11303 0.04217725614716983 EELRLQIY 8 Unmodified _EELRLQIY_ 0 0 0 TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.292756 1062.57096 0.29123 0.00015502 0.090274 4.8052E-05 0.3815 0.00020307 532.2926501470187 41.776 0.46508 41.776 41.618 42.083 0 0.035198 -0.00034669 NaN 19.439 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4074200 11041 25822 7011 7015 0.04217725614716983 EELRLQIY 8 Unmodified _EELRLQIY_ 0 0 0 TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.292756 1062.57096 0.022288 1.1864E-05 0.50641 0.00026956 0.52869 0.00028142 532.7942710642384 44.54 0.38811 41.75 41.531 41.919 -2.79 0.0094668 9.6319E-05 NaN 19.439 26 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3237700 11042 25822 7011 7015 0.04217725614716983 EELRLQIY 8 Unmodified _EELRLQIY_ 0 0 0 TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.292756 1062.57096 0.34288 0.00018251 0.22293 0.00011866 0.56581 0.00030118 532.2928355072485 44.484 0.38123 41.718 41.595 41.976 -2.7661 -0.023376 -0.00020547 NaN 19.439 27 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4158400 11043 25822 7011 7015 0.04217725614716983 EELRLQIY 8 Unmodified _EELRLQIY_ 0 0 0 TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant TBC1D25|p.R223Q|1|0.17|ENSG00000068354|chrX:48559309-48559309|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.292756 1062.57096 -0.034585 -1.8409E-05 0.99033 0.00052715 0.95575 0.00050874 532.2931338967016 44.467 0.45544 41.72 41.499 41.954 -2.7475 -0.021288 0.0006115 NaN 19.439 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2513000 11044 25822 7011 7015 0.04217725614716983 EELRMLPRFYI 11 Unmodified _EELRMLPRFYI_ 0 0 0 REV__ENSG00000250317|ENST00000506197|SMIM20 REV__ENSG00000250317|ENST00000506197|SMIM20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2698669433594 3 489.598995 1465.77516 0.10573 5.1767E-05 0.3148 0.00015413 0.42053 0.00020589 489.93360958905794 132.64 0.46927 128 127.69 128.16 -4.6399 18 12 2 0 0 0 0.806 1 26108 26108 2.8433 0 1 1105800 + 11045 19825 7012 7016 11304 11304 0.0608992171371483 EELRMLPRFYI 11 Unmodified _EELRMLPRFYI_ 0 0 0 REV__ENSG00000250317|ENST00000506197|SMIM20 REV__ENSG00000250317|ENST00000506197|SMIM20 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 489.598995 1465.77516 0.15412 7.5458E-05 0.26899 0.0001317 0.42311 0.00020715 489.59918876800896 132.7 0.29097 127.85 127.67 127.96 -4.8527 -0.072099 -2.1527E-05 NaN 2.8433 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 781060 + 11046 19825 7012 7016 0.0608992171371483 EELRQQQL 8 Unmodified _EELRQQQL_ 0 0 0 REV__ENST00000301459.4_1_11:63678825-63678924:-|nuORF REV__ENST00000301459.4_1_11:63678825-63678924:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2779541015625 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 45.188 1 42.398 41.898 42.898 -2.79 0 0 0 0.20294 1 8504 8504 23.148 0 1 + 11047 20409 7013 7017 11305 11305 0.021153669495106442 EELRQRGPP 9 Unmodified _EELRQRGPP_ 0 0 0 REV__MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant REV__MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.258544921875 2 541.291079 1080.56761 NaN NaN NaN NaN NaN NaN NaN 122.34 1 117.65 117.15 118.15 -4.6873 0 0 0 0.23508 1 23490 23490 12.532 2.4576 1 + 11048 14483 7014 7018 11306 11306 0.030544755607024854 EELRTQVKEI 10 Unmodified _EELRTQVKEI_ 0 0 0 REV__ENST00000466110.5_1_2:74592577-74593714:-|nuORF;REV__nc|ENSG00000204843|Q14203-5|DCTN1 REV__nc|ENSG00000204843|Q14203-5|DCTN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7540893554688 2 622.845884 1243.67722 NaN NaN NaN NaN NaN NaN NaN 158.22 1 152.94 152.44 153.44 -5.2748 0 0 0 0.22588 1 30707 30707 8.7454 1.1365 1 + 11049 21963;19567 7015 7019 11307 11307 0.06512436389380127 EELRVYLRT 9 Unmodified _EELRVYLRT_ 0 0 0 RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant;RIC1|p.M978Ifs*8|1|0.04|ENSG00000107036|chr9:5765505-5765506|-/TTGGGAA|frameshift_variant;nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1 RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2597045898438 2 589.830037 1177.64552 NaN NaN NaN NaN NaN NaN NaN 55.035 1 51.9 51.4 52.4 -3.1352 0 0 0 0.23508 1 10163 10163 7.2892 0.56607 1 11050 2411 7016 7020 11308 11308 0.06380488426066222 EELSDKVAA 9 Unmodified _EELSDKVAA_ 0 0 0 REV__nc|ENSG00000169064|A8MT70-3|ZBBX REV__nc|ENSG00000169064|A8MT70-3|ZBBX MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2455749511719 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 26.265 1 24.343 23.843 24.843 -1.9222 0 0 0 0.21844 1 4343 4343 18.146 1.0335 1 + 11051 18074 7017 7021 11309 11309 -0.0054283292729451205 EELSFLTGGI 10 Unmodified _EELSFLTGGI_ 0 0 0 REV__nc|ENSG00000011021|P51797-3|CLCN6 REV__nc|ENSG00000011021|P51797-3|CLCN6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2763671875 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 114.73 1 110.26 109.76 110.76 -4.4726 0 0 0 0.22535 1 22609 22609 20.454 0 1 + 11052 13444 7018 7022 11310 11310 0.009303131409069465 EELSGALGAA 10 Unmodified _EELSGALGAA_ 0 0 0 REV__ENSG00000248746|ENST00000513398|ACTN3 REV__ENSG00000248746|ENST00000513398|ACTN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 459.2507019042969 2 459.232364 916.450176 -0.043101 -1.9794E-05 0.36847 0.00016921 0.32537 0.00014942 459.23249672487054 54.079 1.7489 50.941 50.467 52.216 -3.1377 121 49 4 0 0 0 0.65405 1 10245 10245 15.847 1.2655 1 143760000 + 11053 19816 7019 7023 11311 11311 -0.011391020987616685 EELSGLWS 8 Unmodified _EELSGLWS_ 0 0 0 REV__OR5B2|p.F60Sfs*44|1|0.38|ENSG00000172365|chr11:58423083-58423083|A/-|frameshift_variant REV__OR5B2|p.F60Sfs*44|1|0.38|ENSG00000172365|chr11:58423083-58423083|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2347717285156 2 460.721633 919.428712 NaN NaN NaN NaN NaN NaN NaN 54.856 1 51.972 51.472 52.472 -2.8837 0 0 0 0.17894 1 10480 10480 32.117 5.7757 1 + 11054 24413 7020 7024 11312 11312 -0.03422487127477325 EELSGVRTA 9 Unmodified _EELSGVRTA_ 0 0 0 ENST00000529480.1_1_11:57449153-57457721:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5 ENST00000529480.1_1_11:57449153-57457721:+|nuORF ENST00000529480.1_1_11:57449153-57457721:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25103759765625 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 32.293 1 32.293 31.793 32.793 0 0 0 0 0.22193 1 5861 5861 17.113 1.2657 1 11055 5094 7021 7025 11313 11313 0.005799891668630153 EELSGVRTA 9 Unmodified _EELSGVRTA_ 0 0 0 ENST00000529480.1_1_11:57449153-57457721:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5 ENST00000529480.1_1_11:57449153-57457721:+|nuORF ENST00000529480.1_1_11:57449153-57457721:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2514953613281 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 34.557 1 32.239 31.739 32.739 -2.3175 0 0 0 0.1543 1 6347 6347 29.841 12.898 1 11056 5094 7021 7025 11314 11314 0.005799891668630153 EELSGVRTA 9 Unmodified _EELSGVRTA_ 0 0 0 ENST00000529480.1_1_11:57449153-57457721:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5 ENST00000529480.1_1_11:57449153-57457721:+|nuORF ENST00000529480.1_1_11:57449153-57457721:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2421875 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 34.689 1 32.372 31.872 32.872 -2.3175 0 0 0 0.12773 1 6374 6374 33.445 8.0456 1 11057 5094 7021 7025 11315 11315 0.005799891668630153 EELSGVRTA 9 Unmodified _EELSGVRTA_ 0 0 0 ENST00000529480.1_1_11:57449153-57457721:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5 ENST00000529480.1_1_11:57449153-57457721:+|nuORF ENST00000529480.1_1_11:57449153-57457721:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24212646484375 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 34.568 1 32.315 31.815 32.815 -2.2527 0 0 0 0.12107 1 6066 6066 37.075 27.001 1 11058 5094 7021 7025 11316 11316 0.005799891668630153 EELSGVRTA 9 Unmodified _EELSGVRTA_ 0 0 0 ENST00000529480.1_1_11:57449153-57457721:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5 ENST00000529480.1_1_11:57449153-57457721:+|nuORF ENST00000529480.1_1_11:57449153-57457721:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25115966796875 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 34.589 1 32.336 31.836 32.836 -2.2527 0 0 0 0.10991 1 6069 6069 36.506 11.832 1 11059 5094 7021 7025 11317 11317 0.005799891668630153 EELSGVRTA 9 Unmodified _EELSGVRTA_ 0 0 0 ENST00000529480.1_1_11:57449153-57457721:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5 ENST00000529480.1_1_11:57449153-57457721:+|nuORF ENST00000529480.1_1_11:57449153-57457721:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2509765625 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 34.518 1 32.302 31.802 32.802 -2.2158 0 0 0 0.10991 1 6051 6051 36.506 14.76 1 11060 5094 7021 7025 11318 11318 0.005799891668630153 EELSRKWF 8 Unmodified _EELSRKWF_ 0 0 0 REV__ENSG00000166130|ENST00000299157|IKBIP REV__ENSG00000166130|ENST00000299157|IKBIP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7819213867188 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 100.18 1 95.885 95.385 96.385 -4.297 0 0 0 0.21323 1 19157 19157 14.582 0.67564 1 + 11061 17826 7022 7026 11319 11319 0.012608588174998658 EELSSEELED 10 Unmodified _EELSSEELED_ 0 0 0 ENST00000605810.1_1_3:70174691-70175321:-|nuORF ENST00000605810.1_1_3:70174691-70175321:-|nuORF ENST00000605810.1_1_3:70174691-70175321:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2484741210938 2 590.248605 1178.48266 NaN NaN NaN NaN NaN NaN NaN 60.624 1 60.624 60.124 61.124 0 0 0 0 0.22576 1 11625 11625 14.838 0 1 11062 11735 7023 7027 11320 11320 -0.09944404277075591 EELSSEELED 10 Unmodified _EELSSEELED_ 0 0 0 ENST00000605810.1_1_3:70174691-70175321:-|nuORF ENST00000605810.1_1_3:70174691-70175321:-|nuORF ENST00000605810.1_1_3:70174691-70175321:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2547607421875 2 590.248605 1178.48266 NaN NaN NaN NaN NaN NaN NaN 97.37 1 93.135 92.635 93.635 -4.2348 0 0 0 0.21574 1 18599 18599 25.399 0 1 11063 11735 7023 7027 11321 11321 -0.09944404277075591 EELTERIA 8 Unmodified _EELTERIA_ 0 0 0 REV__tr|U7STH9|U7STH9_FUSNUNudixhydrolasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01063PE=4SV=1 REV__tr|U7STH9|U7STH9_FUSNUNudixhydrolasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01063PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.255126953125 2 480.753464 959.492375 0.78465 0.00037723 -1.3144 -0.00063192 -0.52977 -0.00025469 480.7528675041002 28.673 1.1465 26.717 26.192 27.338 -1.9561 37 32 2 0 0 0 0.69887 1 5067 5067 14.582 0 1 675360 + 11064 25106 7024 7028 11322 11322 0.011008733096105061 EELTGNPSFT 10 Unmodified _EELTGNPSFT_ 0 0 0 REV__ENST00000463835.5_1_1:2492016-2492960:+|nuORF REV__ENST00000463835.5_1_1:2492016-2492960:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7860717773438 2 547.753661 1093.49277 0.012462 6.8263E-06 -1.3126 -0.00071896 -1.3001 -0.00071213 547.7538083780657 63.345 0.44869 63.345 63.019 63.468 0 20 12 2 0 0 0 0.53552 1 12185 12185 22.736 0 1 1738300 + 11065 17311 7025 7029 11323 11323 -0.05023751761177664 EELTKITK 8 Unmodified _EELTKITK_ 0 0 0 REV__nc|ENSG999|O00370|L1_ORF2;REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|42|2|sense REV__nc|ENSG999|O00370|L1_ORF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78363037109375 2 481.281857 960.549162 0.07517 3.6178E-05 -0.1762 -8.48E-05 -0.10103 -4.8622E-05 481.2816538249409 79.598 0.81738 76.088 75.659 76.476 -3.5102 58 22 3 0 0 0 8448 1 15497 15497 1.4551 0 1 5568500 + 11066 24337;23764 7026 7030 11324 11324 0.06730920866141332 EELTKITK 8 Unmodified _EELTKITK_ 0 0 0 REV__nc|ENSG999|O00370|L1_ORF2;REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|42|2|sense REV__nc|ENSG999|O00370|L1_ORF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77276611328125 2 481.281857 960.549162 -0.023724 -1.1418E-05 -0.24255 -0.00011674 -0.26627 -0.00012815 481.28166765028675 79.91 0.92024 76.105 75.646 76.566 -3.8048 59 25 3 0 0 0 8448 3 15122 15122;15168;15193 2.643 1.3273 1 5163900 + 11067 24337;23764 7026 7030 11325;11326;11327 11325 0.06730920866141332 EELTKITK 8 Unmodified _EELTKITK_ 0 0 0 REV__nc|ENSG999|O00370|L1_ORF2;REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|42|2|sense REV__nc|ENSG999|O00370|L1_ORF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78363037109375 2 481.281857 960.549162 -0.19101 -9.1932E-05 -0.02042 -9.8278E-06 -0.21144 -0.00010176 481.2817725501397 79.831 0.94025 76.155 75.69 76.63 -3.676 59 26 3 0 0 0 8448 1 15262 15262 2.643 0 1 5761200 + 11068 24337;23764 7026 7030 11328 11328 0.06730920866141332 EELTSTLIDR 10 Unmodified _EELTSTLIDR_ 0 0 0 NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant;nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8 NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.273681640625 2 588.808968 1175.60338 0.30808 0.0001814 -0.72552 -0.00042719 -0.41743 -0.00024579 588.8085946187164 49.131 1.3265 46.25 45.821 47.148 -2.8811 128 37 6 0 0 0 0.71778 1 9238 9238 9.3831 2.0939 1 284920000 11069 6640 7027 7031 11329 11329 0.022604682270639387 EELTSTLIDR 10 Unmodified _EELTSTLIDR_ 0 0 0 NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant;nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8 NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 588.808968 1175.60338 0.68058 0.00040073 -0.76278 -0.00044913 -0.082198 -4.8399E-05 588.8085581150921 46.397 1.2251 46.397 45.968 47.193 0 0.06287 -0.00019329 NaN 9.3831 120 34 5 NaN NaN NaN NaN 0 NaN NaN 0 198620000 11070 6640 7027 7031 0.022604682270639387 EELTSTLIDR 10 Unmodified _EELTSTLIDR_ 0 0 0 NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant;nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8 NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 588.808968 1175.60338 0.41703 0.00024555 -0.59191 -0.00034852 -0.17488 -0.00010297 588.8086813842621 49.349 1.3728 46.35 45.964 47.337 -2.999 0.016006 7.9309E-06 NaN 9.3831 126 39 5 NaN NaN NaN NaN 0 NaN NaN 0 278030000 11071 6640 7027 7031 0.022604682270639387 EELTSTLIDR 10 Unmodified _EELTSTLIDR_ 0 0 0 NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant;nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8 NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 588.808968 1175.60338 -0.068091 -4.0093E-05 -0.14868 -8.7546E-05 -0.21677 -0.00012764 588.8089504368796 49.346 1.6179 46.339 45.897 47.515 -3.0068 0.0052207 0.00052988 NaN 9.3831 141 46 5 NaN NaN NaN NaN 0 NaN NaN 0 219410000 11072 6640 7027 7031 0.022604682270639387 EELTVTATP 9 Unmodified _EELTVTATP_ 0 0 0 ENST00000579383.5_1_7:45023639-45025664:-|nuORF;ENST00000578968.5_1_7:45024010-45025664:-|nuORF;ENST00000577700.5_1_7:45025577-45025664:-|nuORF ENST00000579383.5_1_7:45023639-45025664:-|nuORF ENST00000579383.5_1_7:45023639-45025664:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25079345703125 2 480.747847 959.481142 0.18554 8.9199E-05 -0.65316 -0.00031401 -0.46762 -0.00022481 480.74745718828655 75.841 1.9103 75.841 75.138 77.048 0 138 54 4 0 0 0 0.026587 4 14672 14672;14718;14767;14816 85.357 34.502 1 138950000 11073 11470 7028 7032 11330;11331;11332;11333 11330 -0.00021948784524283838 EELTVTATP 9 Unmodified _EELTVTATP_ 0 0 0 ENST00000579383.5_1_7:45023639-45025664:-|nuORF;ENST00000578968.5_1_7:45024010-45025664:-|nuORF;ENST00000577700.5_1_7:45025577-45025664:-|nuORF ENST00000579383.5_1_7:45023639-45025664:-|nuORF ENST00000579383.5_1_7:45023639-45025664:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2493896484375 2 480.747847 959.481142 0.06877 3.3061E-05 -0.13045 -6.2711E-05 -0.061675 -2.965E-05 480.74772784083825 79.516 1.4482 76.006 75.483 76.932 -3.5102 110 40 4 0 0 0 0.026587 3 15538 15452;15538;15588 85.357 34.502 1 89053000 11074 11470 7028 7032 11334;11335;11336 11335 -0.00021948784524283838 EELTVTATP 9 Unmodified _EELTVTATP_ 0 0 0 ENST00000579383.5_1_7:45023639-45025664:-|nuORF;ENST00000578968.5_1_7:45024010-45025664:-|nuORF;ENST00000577700.5_1_7:45025577-45025664:-|nuORF ENST00000579383.5_1_7:45023639-45025664:-|nuORF ENST00000579383.5_1_7:45023639-45025664:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2492980957031 2 480.747847 959.481142 -0.02998 -1.4413E-05 -0.12812 -6.1594E-05 -0.1581 -7.6007E-05 480.7477271767692 79.929 1.713 76.124 75.439 77.152 -3.8048 127 48 4 0 0 0 1.9898E-14 8 15175 15082;15090;15133;15175;15215;15218;15267;15316 85.357 55.438 1 74106000 11075 11470 7028 7032 11337;11338;11339;11340;11341;11342;11343;11344 11340 -0.00021948784524283838 EELTVTATP 9 Unmodified _EELTVTATP_ 0 0 0 ENST00000579383.5_1_7:45023639-45025664:-|nuORF;ENST00000578968.5_1_7:45024010-45025664:-|nuORF;ENST00000577700.5_1_7:45025577-45025664:-|nuORF ENST00000579383.5_1_7:45023639-45025664:-|nuORF ENST00000579383.5_1_7:45023639-45025664:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24908447265625 2 480.747847 959.481142 -0.17367 -8.349E-05 0.011545 5.5501E-06 -0.16212 -7.794E-05 480.74778982841497 79.771 1.6057 76.095 75.548 77.153 -3.676 122 45 4 0 0 0 1.1982E-08 6 15166 15166;15167;15209;15212;15255;15258 85.357 55.438 1 94578000 11076 11470 7028 7032 11345;11346;11347;11348;11349;11350 11345 -0.00021948784524283838 EELTYLIE 8 Unmodified _EELTYLIE_ 0 0 0 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.8275451660156 3 337.174457 1008.50154 -0.71189 -0.00024003 0.069352 2.3384E-05 -0.64253 -0.00021665 337.5083118903234 107.29 0.31485 102.97 102.86 103.17 -4.32 10 8 2 0 0 0 8448 1 21144 21144 10.074 0 1 854240 11077 7975 7029 7033 11351 11351 -0.0023677812470168647 EELVEPVAA 9 Unmodified _EELVEPVAA_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;ENST00000491229.1_1_2:232035243-232035423:+|nuORF nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7256164550781 2 478.75039 955.486227 0.16954 8.1166E-05 -0.57381 -0.00027471 -0.40427 -0.00019354 478.7501136213424 90.049 0.38927 86.271 86.078 86.468 -3.7779 16 10 2 0 0 0 0.74655 1 17210 17210 21.747 2.3076 1 821900 11078 6305 7030 7034 11352 11352 0.006703550780912337 EELVEPVAA 9 Unmodified _EELVEPVAA_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;ENST00000491229.1_1_2:232035243-232035423:+|nuORF nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.75039 955.486227 -0.059359 -2.8418E-05 0.27329 0.00013084 0.21393 0.00010242 478.75067713343805 89.937 0.39459 86.078 85.976 86.37 -3.8595 -0.096566 0.00066685 NaN 34.102 16 10 3 NaN NaN NaN NaN 0 NaN NaN 0 892580 11079 6305 7030 7034 0.006703550780912337 EELVVCSDEE 10 Unmodified _EELVVCSDEE_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-3|WDR81 REV__nc|ENSG00000167716|Q562E7-3|WDR81 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3133544921875 2 576.242269 1150.46998 NaN NaN NaN NaN NaN NaN NaN 150.2 1 145 144.5 145.5 -5.1994 0 0 0 0.22588 1 29104 29104 6.2058 0.97511 1 + 11080 17961 7031 7035 11353 11353 -0.09923138940985154 EELWAPVD 8 Unmodified _EELWAPVD_ 0 0 0 REV__nc|ENSG00000152670|Q9NQI0-3|DDX4 REV__nc|ENSG00000152670|Q9NQI0-3|DDX4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2348937988281 2 479.729458 957.444362 -0.050936 -2.4436E-05 -1.4736 -0.00070695 -1.5246 -0.00073138 479.728196771598 58.671 1.3208 55.761 54.963 56.284 -2.9105 133 37 5 0 0 0 0.64227 1 11197 11197 19.439 19.439 1 18890000 + 11081 17117 7032 7036 11354 11354 -0.03606200610443011 EELWAPVD 8 Unmodified _EELWAPVD_ 0 0 0 REV__nc|ENSG00000152670|Q9NQI0-3|DDX4 REV__nc|ENSG00000152670|Q9NQI0-3|DDX4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23455810546875 2 479.729458 957.444362 0.072132 3.4604E-05 -1.4428 -0.00069213 -1.3706 -0.00065753 479.72801127847424 58.926 1.3174 55.721 55.026 56.343 -3.2052 120 37 4 0 0 0 0.64227 1 10968 10968 19.439 19.439 1 13004000 + 11082 17117 7032 7036 11355 11355 -0.03606200610443011 EELYAKAR 8 Unmodified _EELYAKAR_ 0 0 0 REV__ENSG00000160862|ENST00000292401|AZGP1 REV__ENSG00000160862|ENST00000292401|AZGP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2654113769531 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 94.825 1 90.944 90.444 91.444 -3.881 0 0 0 0.22934 1 18195 18195 1.7423 1.1154 1 + 11083 17439 7033 7037 11356 11356 0.023328834091330464 EELYDLFKR 9 Unmodified _EELYDLFKR_ 0 0 0 nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 404.3083190917969 3 404.880156 1211.61864 -0.14956 -6.0555E-05 -0.18225 -7.3791E-05 -0.33182 -0.00013435 404.8800513839149 79.592 0.6752 76.082 75.692 76.367 -3.5102 32 18 2 0 0 0 0.8799 1 15544 15544 0.96228 0 1 1594300 11084 7600 7034 7038 11357 11357 0.02129379814891763 EELYSKVTP 9 Unmodified _EELYSKVTP_ 0 0 0 ENSG00000154127|ENST00000284273|UBASH3B;ENST00000525711.1_1_11:122526757-122598246:+|nuORF;UBASH3B|p.R25Gfs*76|1|0.28|ENSG00000154127|chr11:122656117-122656117|C/-|frameshift_variant ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2770385742188 2 533.276772 1064.53899 -0.2287 -0.00012196 0.32522 0.00017343 0.096516 5.147E-05 533.2768631662317 67.589 0.84721 67.589 66.978 67.826 0 40 23 3 0 0 0 0.043105 2 13074 13027;13074 74.2 34.242 1 3526700 11085 4995 7035 7039 11358;11359 11359 0.009303131409069465 EELYSKVTP 9 Unmodified _EELYSKVTP_ 0 0 0 ENSG00000154127|ENST00000284273|UBASH3B;ENST00000525711.1_1_11:122526757-122598246:+|nuORF;UBASH3B|p.R25Gfs*76|1|0.28|ENSG00000154127|chr11:122656117-122656117|C/-|frameshift_variant ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2771606445312 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 67.163 1 67.163 66.663 67.663 0 0 0 0 0.10094 1 12978 12978 38.176 12.776 1 11086 4995 7035 7039 11360 11360 0.009303131409069465 EELYSKVTP 9 Unmodified _EELYSKVTP_ 0 0 0 ENSG00000154127|ENST00000284273|UBASH3B;ENST00000525711.1_1_11:122526757-122598246:+|nuORF;UBASH3B|p.R25Gfs*76|1|0.28|ENSG00000154127|chr11:122656117-122656117|C/-|frameshift_variant ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27685546875 2 533.276772 1064.53899 -0.043161 -2.3017E-05 0.19645 0.00010476 0.15329 8.1748E-05 533.2767305413105 70.924 0.63592 67.675 67.25 67.886 -3.2492 32 17 2 0 0 0 0.051332 2 13780 13728;13780 70.332 34.205 1 3080300 11087 4995 7035 7039 11361;11362 11362 0.009303131409069465 EELYSKVTP 9 Unmodified _EELYSKVTP_ 0 0 0 ENSG00000154127|ENST00000284273|UBASH3B;ENST00000525711.1_1_11:122526757-122598246:+|nuORF;UBASH3B|p.R25Gfs*76|1|0.28|ENSG00000154127|chr11:122656117-122656117|C/-|frameshift_variant ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2767333984375 2 533.276772 1064.53899 0.71034 0.00037881 -0.46106 -0.00024587 0.24928 0.00013294 533.2763825407316 71.301 0.66449 67.721 67.23 67.895 -3.5798 42 18 3 0 0 0 0.068672 4 13434 13365;13387;13390;13434 61.602 39.266 1 2442600 11088 4995 7035 7039 11363;11364;11365;11366 11366 0.009303131409069465 EELYSKVTP 9 Unmodified _EELYSKVTP_ 0 0 0 ENSG00000154127|ENST00000284273|UBASH3B;ENST00000525711.1_1_11:122526757-122598246:+|nuORF;UBASH3B|p.R25Gfs*76|1|0.28|ENSG00000154127|chr11:122656117-122656117|C/-|frameshift_variant ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27685546875 2 533.276772 1064.53899 0.40743 0.00021727 -0.27446 -0.00014636 0.13297 7.0912E-05 533.2765183644573 71.145 0.67038 67.678 67.235 67.905 -3.467 43 18 3 0 0 0 0.043105 5 13492 13423;13444;13456;13489;13492 74.2 41.894 1 4026600 11089 4995 7035 7039 11367;11368;11369;11370;11371 11371 0.009303131409069465 EEMADRVL 8 Unmodified _EEMADRVL_ 0 0 0 REV__TRDN|p.P386Tfs*34|1|0.13|ENSG00000186439|chr6:123382127-123382128|-/T|frameshift_variant REV__TRDN|p.P386Tfs*34|1|0.13|ENSG00000186439|chr6:123382127-123382128|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78192138671875 2 481.734217 961.453881 NaN NaN NaN NaN NaN NaN NaN 58.247 1 55.337 54.837 55.837 -2.9105 0 0 0 0.21181 1 11185 11185 15.768 1.1865 1 + 11090 19031 7036 7040 11372 11372 -0.028387555965537103 EEMDGLDDVE 10 Unmodified _EEMDGLDDVE_ 0 0 0 nc|ENSG00000182973|Q9H9A5-6|CNOT10;nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3372802734375 2 576.224076 1150.4336 0.62785 0.00036178 -1.7587 -0.0010134 -1.1309 -0.00065163 576.7251780101299 122.38 0.20169 117.69 117.58 117.78 -4.6873 8 5 2 0 0 0 0.71097 1 23477 23477 10.074 1.3285 1 1028900 11091 12503 7037 7041 11373 11373 -0.13560015837674655 EEMEERTSSF 10 Unmodified _EEMEERTSSF_ 0 0 0 REV__nc|ENSG00000079482|O60890-2|OPHN1 REV__nc|ENSG00000079482|O60890-2|OPHN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.778076171875 2 622.758617 1243.50268 NaN NaN NaN NaN NaN NaN NaN 158.32 1 153.04 152.54 153.54 -5.2712 0 0 0 0.22535 1 30719 30719 20.454 10.38 1 + 11092 14398 7038 7042 11374 11374 -0.10932931818115321 EEMEERTSSF 10 Unmodified _EEMEERTSSF_ 0 0 0 REV__nc|ENSG00000079482|O60890-2|OPHN1 REV__nc|ENSG00000079482|O60890-2|OPHN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.75927734375 2 622.758617 1243.50268 NaN NaN NaN NaN NaN NaN NaN 158.44 1 153.16 152.66 153.66 -5.2712 0 0 0 0.22576 1 30741 30741 14.838 6.0929 1 + 11093 14398 7038 7042 11375 11375 -0.10932931818115321 EEMEMKEPE 9 Unmodified _EEMEMKEPE_ 0 0 0 REV__ENSG00000054690|ENST00000329153|PLEKHH1 REV__ENSG00000054690|ENST00000329153|PLEKHH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.32470703125 2 576.23339 1150.45223 NaN NaN NaN NaN NaN NaN NaN 130.27 1 125.5 125 126 -4.7725 0 0 0 0.23508 1 25068 25068 7.9102 1.187 1 + 11094 14107 7039 7043 11376 11376 -0.11698177467451387 EEMETGNVA 9 Unmodified _EEMETGNVA_ 0 0 0 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2556457519531 2 490.205489 978.396426 0.19696 9.6551E-05 0.096054 4.7086E-05 0.29301 0.00014364 490.205485535097 32.829 1.3275 32.829 32.363 33.69 0 68 37 3 0 0 0 0.026338 1 6011 6011 100.37 71.885 1 4094500 11095 5370 7040 7044 11377 11377 -0.09363642592768429 EEMETGNVA 9 Unmodified _EEMETGNVA_ 0 0 0 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2558288574219 2 490.205489 978.396426 -0.13946 -6.8365E-05 0.4222 0.00020697 0.28274 0.0001386 490.20568242090104 35.03 1.0598 32.636 32.216 33.276 -2.3938 66 29 3 0 0 0 0.035225 1 6522 6522 88.904 60.417 1 5420500 11096 5370 7040 7044 11378 11378 -0.09363642592768429 EEMETGNVA 9 Unmodified _EEMETGNVA_ 0 0 0 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2564392089844 2 490.205489 978.396426 0.2625 0.00012868 0.026366 1.2925E-05 0.28887 0.0001416 490.205485204142 34.957 1.1427 32.704 32.359 33.501 -2.2527 73 32 3 0 0 0 0.081249 1 6231 6231 74.423 38.379 1 4068600 11097 5370 7040 7044 11379 11379 -0.09363642592768429 EEMETGNVA 9 Unmodified _EEMETGNVA_ 0 0 0 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2554626464844 2 490.205489 978.396426 0.091465 4.4837E-05 0.19659 9.6371E-05 0.28806 0.00014121 490.2055496922723 35.021 1.0082 32.745 32.378 33.386 -2.2766 52 28 2 0 0 0 0.081249 1 6221 6221 74.423 45.936 1 3213300 11098 5370 7040 7044 11380 11380 -0.09363642592768429 EEMEVPVLP 9 Unmodified _EEMEVPVLP_ 0 0 0 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant;NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2613525390625 2 521.759901 1041.50525 -0.069196 -3.6103E-05 0.24871 0.00012976 0.17951 9.3662E-05 521.7601411045765 158.01 0.8537 153.21 152.83 153.69 -4.7952 36 23 2 0 0 0 0.13708 2 31458 31376;31458 46.021 25.567 1 2171800 11099 3333 7041 7045 11381;11382 11382 -0.01384431622500415 EEMEVPVLP 9 Unmodified _EEMEVPVLP_ 0 0 0 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant;NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2619018554688 2 521.759901 1041.50525 -0.54469 -0.0002842 0.46112 0.00024059 -0.083566 -4.3601E-05 521.7602134875963 158.72 0.7771 153.44 153.05 153.83 -5.2748 39 21 3 0 0 0 0.049167 4 30823 30777;30796;30823;30825 54.774 30.588 1 2434100 11100 3333 7041 7045 11383;11384;11385;11386 11385 -0.01384431622500415 EEMEVPVLP 9 Unmodified _EEMEVPVLP_ 0 0 0 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant;NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2727661132812 2 521.759901 1041.50525 0.47939 0.00025013 -0.51495 -0.00026868 -0.035561 -1.8554E-05 521.7594804286481 158.59 0.83337 153.32 152.94 153.77 -5.2712 27 22 2 0 0 0 0.061198 4 30776 30736;30739;30776;30785 48.346 32.499 1 2311100 11101 3333 7041 7045 11387;11388;11389;11390 11389 -0.01384431622500415 EEMEVSLAKPK 11 Unmodified _EEMEVSLAKPK_ 0 0 0 ENST00000557552.1_1_14:105241736-105242162:-|nuORF;nc|ENSG00000142208|P31749-2|AKT1;ENSG00000142208|ENST00000649815|AKT1 ENST00000557552.1_1_14:105241736-105242162:-|nuORF ENST00000557552.1_1_14:105241736-105242162:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7645263671875 2 630.828846 1259.64314 NaN NaN NaN NaN NaN NaN NaN 158.15 1 152.88 152.38 153.38 -5.2712 0 0 0 0.20718 1 30683 30683 17.113 6.289 1 11102 4412 7042 7046 11391 11391 0.023702719061020616 EEMEVSLAKPK 11 Unmodified _EEMEVSLAKPK_ 0 0 0 ENST00000557552.1_1_14:105241736-105242162:-|nuORF;nc|ENSG00000142208|P31749-2|AKT1;ENSG00000142208|ENST00000649815|AKT1 ENST00000557552.1_1_14:105241736-105242162:-|nuORF ENST00000557552.1_1_14:105241736-105242162:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7505493164062 2 630.828846 1259.64314 NaN NaN NaN NaN NaN NaN NaN 158.22 1 152.94 152.44 153.44 -5.2712 0 0 0 0.20718 1 30697 30697 17.113 6.289 1 11103 4412 7042 7046 11392 11392 0.023702719061020616 EEMEWFNNY 9 Unmodified _EEMEWFNNY_ 0 0 0 ENSG00000101003|ENST00000262460|GINS1 ENSG00000101003|ENST00000262460|GINS1 ENSG00000101003|ENST00000262460|GINS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7539672851562 2 631.245146 1260.47574 0.40872 0.000258 -0.44624 -0.00028169 -0.037522 -2.3686E-05 631.2452359390974 152.44 0.72852 152.44 152.09 152.81 0 58 19 4 0 0 0 0.028313 1 30539 30539 108 101.27 1 13322000 11104 2031 7043 7047 11393 11393 -0.1440799563863493 EEMEWFNNY 9 Unmodified _EEMEWFNNY_ 0 0 0 ENSG00000101003|ENST00000262460|GINS1 ENSG00000101003|ENST00000262460|GINS1 ENSG00000101003|ENST00000262460|GINS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76220703125 2 631.245146 1260.47574 1.1081 0.0006995 -0.57176 -0.00036092 0.53636 0.00033858 631.2447757566783 158.04 1.0349 153.25 152.73 153.76 -4.7952 93 28 6 0 0 0 2.4077000000000003E-24 1 31406 31406 172.91 146.02 1 28869000 11105 2031 7043 7047 11394 11394 -0.1440799563863493 EEMEWFNNY 9 Unmodified _EEMEWFNNY_ 0 0 0 ENSG00000101003|ENST00000262460|GINS1 ENSG00000101003|ENST00000262460|GINS1 ENSG00000101003|ENST00000262460|GINS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7550048828125 2 631.245146 1260.47574 0.41038 0.00025905 -0.11859 -7.4857E-05 0.2918 0.00018419 631.2451339142478 158.45 0.95778 153.18 152.72 153.68 -5.2748 78 26 4 0 0 0 1.2295E-44 1 30789 30789 113.93 105.02 1 27442000 11106 2031 7043 7047 11395 11395 -0.1440799563863493 EEMEWFNNY 9 Unmodified _EEMEWFNNY_ 0 0 0 ENSG00000101003|ENST00000262460|GINS1 ENSG00000101003|ENST00000262460|GINS1 ENSG00000101003|ENST00000262460|GINS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7796630859375 2 631.245146 1260.47574 0.66495 0.00041975 -0.34756 -0.0002194 0.31739 0.00020035 631.2449569112172 158.36 1.1187 153.09 152.51 153.62 -5.2712 91 30 4 0 0 0 2.171E-16 1 30740 30740 172.91 152.45 1 17896000 11107 2031 7043 7047 11396 11396 -0.1440799563863493 EEMEWFNNY 9 Unmodified _EEMEWFNNY_ 0 0 0 ENSG00000101003|ENST00000262460|GINS1 ENSG00000101003|ENST00000262460|GINS1 ENSG00000101003|ENST00000262460|GINS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 631.245146 1260.47574 1.1026 0.000696 -2.3372 -0.0014753 -1.2346 -0.00077933 631.243373382267 157.24 0.17715 152.45 152.31 152.48 -4.7885 0.0071231 -0.0022186 NaN 108 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1191600 11108 2031 7043 7047 -0.1440799563863493 EEMFREAYE 9 Unmodified _EEMFREAYE_ 0 0 0 REV__CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant REV__CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2759399414062 2 602.252971 1202.49139 NaN NaN NaN NaN NaN NaN NaN 64.764 1 64.764 64.264 65.264 0 0 0 0 0.23508 1 12470 12470 11.64 0.81637 1 + 11109 13322 7044 7048 11397 11397 -0.10175709121563159 EEMGHAETY 9 Unmodified _EEMGHAETY_ 0 0 0 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2702026367188 2 533.710939 1065.40732 0.16682 8.9034E-05 -0.34186 -0.00018245 -0.17504 -9.3419E-05 533.7108016796079 27.57 0.62068 27.57 27.318 27.939 0 41 17 3 0 0 0 0.031632 1 4892 4892 81.613 59.866 1 5396100 11110 4260 7045 7049 11398 11398 -0.12276240218511703 EEMGHAETY 9 Unmodified _EEMGHAETY_ 0 0 0 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2694702148438 2 533.710939 1065.40732 0.67759 0.00036164 -0.83893 -0.00044775 -0.16135 -8.6112E-05 533.7105346693783 29.614 0.73136 27.497 27.177 27.909 -2.1167 57 20 5 0 0 0 1.1368E-10 1 5309 5309 147.83 87.442 1 5807200 11111 4260 7045 7049 11399 11399 -0.12276240218511703 EEMGHAETY 9 Unmodified _EEMGHAETY_ 0 0 0 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2699584960938 2 533.710939 1065.40732 0.7006 0.00037392 -0.93048 -0.00049661 -0.22987 -0.00012269 533.7104937680182 29.509 0.69761 27.616 27.298 27.996 -1.8928 55 19 4 0 0 0 1.1368E-10 1 5016 5016 162.95 102.56 1 6834900 11112 4260 7045 7049 11400 11400 -0.12276240218511703 EEMGHAETY 9 Unmodified _EEMGHAETY_ 0 0 0 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.264404296875 2 533.710939 1065.40732 0.55542 0.00029644 -0.66572 -0.0003553 -0.11029 -5.8864E-05 533.7106670033162 29.602 0.66102 27.527 27.276 27.937 -2.0743 56 18 4 0 0 0 0.029847 1 5065 5065 112.59 78.491 1 5281900 11113 4260 7045 7049 11401 11401 -0.12276240218511703 EEMGSGDYDS 10 Unmodified _EEMGSGDYDS_ 0 0 0 ENSG00000121966|ENST00000241393|CXCR4;nc|ENSG00000121966|P61073-2|CXCR4 ENSG00000121966|ENST00000241393|CXCR4 ENSG00000121966|ENST00000241393|CXCR4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 364.46337890625 3 363.794088 1088.36043 -0.38804 -0.00014117 0.74163 0.0002698 0.35358 0.00012863 363.7943082193523 50.234 1.096 47.353 46.905 48.001 -2.8811 69 30 3 0 0 0 0.42762 1 9496 9496 10.151 3.5202 1 3342600 11114 3201 7046 7050 11402 11402 -0.18021144560293578 EEMGSGDYDS 10 Unmodified _EEMGSGDYDS_ 0 0 0 ENSG00000121966|ENST00000241393|CXCR4;nc|ENSG00000121966|P61073-2|CXCR4 ENSG00000121966|ENST00000241393|CXCR4 ENSG00000121966|ENST00000241393|CXCR4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 363.794088 1088.36043 0.13612 4.9519E-05 0.25208 9.1705E-05 0.3882 0.00014122 363.7941554173204 47.125 1.0196 47.125 46.661 47.681 0 -0.14833 -0.00023772 NaN 10.151 66 28 3 NaN NaN NaN NaN 0 NaN NaN 0 2914900 11115 3201 7046 7050 -0.18021144560293578 EEMHQVAIA 9 Oxidation (M) _EEM(Oxidation (M))HQVAIA_ EEM(1)HQVAIA EEM(65)HQVAIA 0 0 1 ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF ENST00000449421.6_1_17:73205928-73222855:+|nuORF ENST00000449421.6_1_17:73205928-73222855:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.265380859375 2 522.244949 1042.47534 0.21459 0.00011207 -0.17445 -9.1104E-05 0.040145 2.0966E-05 522.2448308032896 32.142 0.55494 32.142 31.844 32.399 0 38 15 3 0 0 0 0.067773 1 5807 5807 65.235 34.598 1 6091700 11116 3359 7048 7051 11403 11403 57 -0.044193705678253536 EEMHQVAIA 9 Oxidation (M) _EEM(Oxidation (M))HQVAIA_ EEM(1)HQVAIA EEM(48)HQVAIA 0 0 1 ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF ENST00000449421.6_1_17:73205928-73222855:+|nuORF ENST00000449421.6_1_17:73205928-73222855:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2802734375 2 522.244949 1042.47534 -0.34111 -0.00017814 0.37269 0.00019464 0.031581 1.6493E-05 522.2451521186114 34.26 0.69368 31.942 31.497 32.19 -2.3175 38 19 3 0 0 0 0.12505 1 6257 6257 47.749 27.295 1 3893100 11117 3359 7048 7051 11404 11404 57 -0.044193705678253536 EEMHQVAIA 9 Oxidation (M) _EEM(Oxidation (M))HQVAIA_ EEM(1)HQVAIA EEM(65)HQVAIA 0 0 1 ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF ENST00000449421.6_1_17:73205928-73222855:+|nuORF ENST00000449421.6_1_17:73205928-73222855:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2615966796875 2 522.244949 1042.47534 0.42242 0.0002206 -0.30137 -0.00015739 0.12105 6.3216E-05 522.244801365837 34.258 0.62963 32.042 31.705 32.334 -2.2158 43 17 4 0 0 0 0.067773 1 6000 6000 65.235 29.108 1 4838900 11118 3359 7048 7051 11405 11405 57 -0.044193705678253536 EEMKESKLP 9 Unmodified _EEMKESKLP_ 0 0 0 CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;ENST00000503126.1_1_5:179133324-179137021:+|nuORF CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 364.1871032714844 3 364.18648 1089.53761 NaN NaN NaN NaN NaN NaN NaN 36.238 1 33.844 33.344 34.344 -2.3938 0 0 0 0.19657 1 6690 6690 4.897 4.5174 1 11119 380 7049 7052 11406 11406 -0.003576442195026175 EEMKFLLAT 9 Unmodified _EEMKFLLAT_ 0 0 0 REV__SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant REV__SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2837524414062 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 41.307 1 38.818 38.318 39.318 -2.4896 0 0 0 0.23508 1 7410 7410 12.532 3.9383 1 + 11120 15856 7050 7053 11407 11407 0.015478476485213832 EEMKGIAA 8 Unmodified _EEMKGIAA_ 0 0 0 ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 ENST00000523744.2_2_8:17924585-17924894:-|nuORF ENST00000523744.2_2_8:17924585-17924894:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25579833984375 2 424.712753 847.410954 -0.49395 -0.00020979 0.77912 0.0003309 0.28518 0.00012112 424.7129909790517 38.263 0.87033 35.794 35.223 36.093 -2.4688 58 24 3 0 0 0 0.50387 1 7031 7031 42.095 17.421 1 42770000 11121 226 7051 7054 11408 11408 -0.018855256539723086 EEMKGIAA 8 Unmodified _EEMKGIAA_ 0 0 0 ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 ENST00000523744.2_2_8:17924585-17924894:-|nuORF ENST00000523744.2_2_8:17924585-17924894:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2403259277344 2 424.712753 847.410954 0.032753 1.3911E-05 0.15916 6.7598E-05 0.19191 8.1509E-05 424.7127404299023 38.2 0.94661 35.758 35.248 36.195 -2.4419 62 26 3 0 0 0 0.64227 1 6844 6844 19.439 4.8573 1 41265000 11122 226 7051 7054 11409 11409 -0.018855256539723086 EEMKGIAA 8 Unmodified _EEMKGIAA_ 0 0 0 ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 ENST00000523744.2_2_8:17924585-17924894:-|nuORF ENST00000523744.2_2_8:17924585-17924894:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24578857421875 2 424.712753 847.410954 -0.081409 -3.4575E-05 0.31358 0.00013318 0.23217 9.8607E-05 424.71282547268345 38.131 0.93663 35.726 35.364 36.301 -2.4049 54 26 3 0 0 0 0.12259 1 6777 6777 58.679 18.721 1 25320000 11123 226 7051 7054 11410 11410 -0.018855256539723086 EEMKGIAA 8 Unmodified _EEMKGIAA_ 0 0 0 ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 ENST00000523744.2_2_8:17924585-17924894:-|nuORF ENST00000523744.2_2_8:17924585-17924894:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 424.2188720703125 2 424.712753 847.410954 -0.36719 -0.00015595 0.61028 0.0002592 0.2431 0.00010325 424.7129562609029 44.557 0.56671 41.809 41.533 42.1 -2.7475 28 15 2 0 0 0 0.95284 1 8070 8070 20.871 12.278 1 2515700 11124 226 7051 7054 11411 11411 -0.018855256539723086 EEMKGIAA 8 Unmodified _EEMKGIAA_ 0 0 0 ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 ENST00000523744.2_2_8:17924585-17924894:-|nuORF ENST00000523744.2_2_8:17924585-17924894:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 424.712753 847.410954 0.12839 5.4528E-05 0.077172 3.2776E-05 0.20556 8.7304E-05 424.7127196119027 35.942 0.72833 35.942 35.554 36.282 0 0.13714 -0.00024589 NaN 58.679 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 20457000 11125 226 7051 7054 -0.018855256539723086 EEMKGIAA 8 Unmodified _EEMKGIAA_ 0 0 0 ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 ENST00000523744.2_2_8:17924585-17924894:-|nuORF ENST00000523744.2_2_8:17924585-17924894:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 424.712753 847.410954 0.30018 0.00012749 -1.1314 -0.00048053 -0.83124 -0.00035304 424.7126459425776 41.767 0.74302 41.767 41.34 42.083 0 -0.026611 -0.0013202 NaN 20.871 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3013900 11126 226 7051 7054 -0.018855256539723086 EEMKGIAA 8 Unmodified _EEMKGIAA_ 0 0 0 ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 ENST00000523744.2_2_8:17924585-17924894:-|nuORF ENST00000523744.2_2_8:17924585-17924894:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 424.712753 847.410954 -0.18741 -7.9595E-05 0.48913 0.00020774 0.30172 0.00012814 424.7129334797832 44.56 0.5644 41.769 41.459 42.024 -2.79 -0.02388 5.629E-05 NaN 20.871 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4273000 11127 226 7051 7054 -0.018855256539723086 EEMKGIAA 8 Unmodified _EEMKGIAA_ 0 0 0 ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 ENST00000523744.2_2_8:17924585-17924894:-|nuORF ENST00000523744.2_2_8:17924585-17924894:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 424.712753 847.410954 -0.061814 -2.6253E-05 0.30872 0.00013112 0.24691 0.00010486 424.71283467833973 44.594 0.626 41.828 41.529 42.155 -2.7661 0.034793 -9.695E-05 NaN 20.871 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3658000 11128 226 7051 7054 -0.018855256539723086 EEMKKIRQV 9 Unmodified _EEMKKIRQV_ 0 0 0 ENST00000518885.1_1_8:17102047-17102691:-|nuORF;ENST00000523649.1_1_8:17102523-17102691:-|nuORF;CNOT7|p.K125Nfs*17|1|0.48|ENSG00000198791|chr8:17237310-17237310|T/-|frameshift_variant;CNOT7|p.P190Sfs*5|1|0.16|ENSG00000198791|chr8:17234766-17234767|-/A|frameshift_variant;nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7 ENST00000518885.1_1_8:17102047-17102691:-|nuORF ENST00000518885.1_1_8:17102047-17102691:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.71649169921875 3 387.553386 1159.63833 -0.15243 -5.9076E-05 -0.08618 -3.3399E-05 -0.23861 -9.2475E-05 387.5534295850908 21.965 0.66476 20.578 20.312 20.977 -1.3866 59 18 5 0 0 0 0.022252 2 3492 3488;3492 90.135 48.179 1 33803000 11129 596 7052 7055 11412;11413 11413 0.0648943255400809 EEMKKIRQV 9 Unmodified _EEMKKIRQV_ 0 0 0 ENST00000518885.1_1_8:17102047-17102691:-|nuORF;ENST00000523649.1_1_8:17102523-17102691:-|nuORF;CNOT7|p.K125Nfs*17|1|0.48|ENSG00000198791|chr8:17237310-17237310|T/-|frameshift_variant;CNOT7|p.P190Sfs*5|1|0.16|ENSG00000198791|chr8:17234766-17234767|-/A|frameshift_variant;nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7 ENST00000518885.1_1_8:17102047-17102691:-|nuORF ENST00000518885.1_1_8:17102047-17102691:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 387.553386 1159.63833 -0.11828 -4.5841E-05 -0.024191 -9.3753E-06 -0.14247 -5.5216E-05 387.55341792847867 20.477 0.715 20.477 20.17 20.885 0 -0.07648 0.00028463 NaN 90.135 58 19 5 NaN NaN NaN NaN 0 NaN NaN 0 22827000 11130 596 7052 7055 0.0648943255400809 EEMKKIRQV 9 Unmodified _EEMKKIRQV_ 0 0 0 ENST00000518885.1_1_8:17102047-17102691:-|nuORF;ENST00000523649.1_1_8:17102523-17102691:-|nuORF;CNOT7|p.K125Nfs*17|1|0.48|ENSG00000198791|chr8:17237310-17237310|T/-|frameshift_variant;CNOT7|p.P190Sfs*5|1|0.16|ENSG00000198791|chr8:17234766-17234767|-/A|frameshift_variant;nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7 ENST00000518885.1_1_8:17102047-17102691:-|nuORF ENST00000518885.1_1_8:17102047-17102691:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 387.553386 1159.63833 0.36251 0.00014049 -0.65618 -0.00025431 -0.29367 -0.00011381 387.5532150630715 22.08 0.56536 20.605 20.34 20.905 -1.4742 0.051792 -0.00045016 NaN 90.135 57 15 5 NaN NaN NaN NaN 0 NaN NaN 0 30023000 11131 596 7052 7055 0.0648943255400809 EEMKLVHRY 9 Unmodified _EEMKLVHRY_ 0 0 0 ENST00000473040.6_1_4:128905516-128956965:+|nuORF ENST00000473040.6_1_4:128905516-128956965:+|nuORF ENST00000473040.6_1_4:128905516-128956965:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2808227539062 2 602.81079 1203.60703 0.40528 0.00024431 1.1045 0.0006658 1.5098 0.00091011 602.8114751877556 67.537 0.37997 64.21 64.003 64.383 -3.3268 18 10 2 0 0 0 0.71527 1 12706 12706 13.906 5.7505 1 1046000 11132 10236 7053 7056 11414 11414 0.013368595199153788 EEMKLVHRY 9 Unmodified _EEMKLVHRY_ 0 0 0 ENST00000473040.6_1_4:128905516-128956965:+|nuORF ENST00000473040.6_1_4:128905516-128956965:+|nuORF ENST00000473040.6_1_4:128905516-128956965:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 602.81079 1203.60703 0.96524 0.00058186 0.46832 0.00028231 1.4336 0.00086417 602.8111700157034 67.455 0.41689 64.346 64.072 64.489 -3.1086 0.10202 -0.00049158 NaN 13.906 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1347000 11133 10236 7053 7056 0.013368595199153788 EEMKNRLYIVF 11 Unmodified _EEMKNRLYIVF_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2441101074219 3 481.255117 1440.74352 NaN NaN NaN NaN NaN NaN NaN 101.88 1 97.557 97.057 98.057 -4.3208 0 0 0 0.22632 1 19500 19500 0.0059557 0 1 11134 1701 7054 7057 11415 11415 0.04077928959759447 EEMKQPVYE 9 Unmodified _EEMKQPVYE_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3154296875 2 576.765714 1151.51688 0.15611 9.0037E-05 0.46047 0.00026558 0.61657 0.00035562 576.7649267303054 131.15 0.2366 126.31 126.21 126.44 -4.8355 11 6 3 0 0 0 0.84208 1 25203 25203 11.64 4.9171 1 1028800 11135 3651 7055 7058 11416 11416 -0.05282234599167168 EEMLIKFLE 9 Unmodified _EEMLIKFLE_ 0 0 0 REV__tr|U7SNI1|U7SNI1_FUSNUGAFdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01767PE=4SV=1 REV__tr|U7SNI1|U7SNI1_FUSNUGAFdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01767PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3176879882812 2 576.304475 1150.5944 NaN NaN NaN NaN NaN NaN NaN 160.34 1 155.54 155.04 156.04 -4.7952 0 0 0 0.22251 1 31885 31885 16.942 4.4107 1 + 11136 24980 7056 7059 11417 11417 0.025124033370275356 EEMLQKAA 8 Unmodified _EEMLQKAA_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2310791015625 2 460.23131 918.448068 0.34271 0.00015773 -1.2812 -0.00058963 -0.93846 -0.00043191 460.2309608705399 39.04 0.59649 39.04 38.638 39.235 0 20 16 2 0 0 0 0.64227 1 7256 7256 19.439 0 1 638800 11137 2755 7057 7060 11418 11418 -0.014418541082136471 EEMLQKAA 8 Unmodified _EEMLQKAA_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24761962890625 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 31.022 1 31.022 30.522 31.522 0 0 0 0 0.21452 1 5590 5590 13.508 0 1 11138 2755 7057 7060 11419 11419 -0.014418541082136471 EEMLQKAA 8 Unmodified _EEMLQKAA_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2309875488281 2 460.23131 918.448068 -0.26478 -0.00012186 -1.3698 -0.00063043 -1.6346 -0.00075229 460.23127748310793 41.602 0.58499 38.967 38.677 39.262 -2.6348 23 16 2 0 0 0 0.45067 1 7783 7783 30.225 0 1 674700 11139 2755 7057 7060 11420 11420 -0.014418541082136471 EEMLQKAA 8 Unmodified _EEMLQKAA_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23101806640625 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 33.128 1 30.811 30.311 31.311 -2.3175 0 0 0 0.21452 1 6052 6052 13.508 0 1 11140 2755 7057 7060 11421 11421 -0.014418541082136471 EEMLQKAA 8 Unmodified _EEMLQKAA_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2311706542969 2 460.23131 918.448068 -0.097461 -4.4854E-05 -1.0588 -0.00048729 -1.1562 -0.00053214 460.2311947013164 41.509 0.55413 38.858 38.549 39.103 -2.651 24 15 2 0 0 0 0.36038 1 7452 7452 34.102 0 1 762440 11141 2755 7057 7060 11422 11422 -0.014418541082136471 EEMLQKAA 8 Unmodified _EEMLQKAA_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2315979003906 2 460.23131 918.448068 0.044498 2.0479E-05 -1.3088 -0.00060236 -1.2643 -0.00058188 460.23120567143434 41.462 0.63261 38.973 38.635 39.268 -2.4896 26 17 2 0 0 0 0.45067 1 7440 7440 30.225 0 1 749690 11142 2755 7057 7060 11423 11423 -0.014418541082136471 EEMLYCMY 8 Unmodified _EEMLYCMY_ 0 0 0 REV__ENST00000463742.1_1_8:103935654-103935939:-|nuORF REV__ENST00000463742.1_1_8:103935654-103935939:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2728271484375 2 541.205589 1080.39663 NaN NaN NaN NaN NaN NaN NaN 73.275 1 73.275 72.775 73.775 0 0 0 0 0.22834 1 14219 14219 0.12286 0 1 + 11143 21926 7058 7061 11424 11424 -0.14035682188796272 EEMMIFIE 8 Unmodified _EEMMIFIE_ 0 0 0 ENSG00000170852|ENST00000304056|KBTBD2 ENSG00000170852|ENST00000304056|KBTBD2 ENSG00000170852|ENST00000304056|KBTBD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2792358398438 2 521.235204 1040.45586 0.39908 0.00020802 1.7961 0.00093621 2.1952 0.0011442 521.2367440314603 41.471 0.83736 41.471 41.023 41.861 0 47 23 3 0 0 0 0.70613 1 7722 7722 13.508 0.97634 1 3044500 11144 6103 7059 7062 11425 11425 -0.06275462902954132 EEMMMMSSSP 10 Unmodified _EEMMMMSSSP_ 0 0 0 ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1;SLC24A1|p.N798Mfs*24|1|0.04|ENSG00000074621|chr15:65650539-65650539|A/-|frameshift_variant;nc|ENSG00000074621|O60721-3|SLC24A1 ENST00000434116.6_1_15:65916409-65944223:+|nuORF ENST00000434116.6_1_15:65916409-65944223:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7125244140625 3 387.142789 1158.40654 -0.074893 -2.8994E-05 -1.3016 -0.00050391 -1.3765 -0.00053291 387.142247372678 30.84 1.1503 30.84 30.485 31.635 0 88 32 4 0 0 0 1.1318 1 5527 5527 0.043787 0.043787 1 8188200 11145 1500 7060 7063 11426 11426 -0.16632862245705837 EEMPHLARP 9 Unmodified _EEMPHLARP_ 0 0 0 ENST00000536066.1_1_12:2967806-2973707:-|nuORF;FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1 ENST00000536066.1_1_12:2967806-2973707:-|nuORF ENST00000536066.1_1_12:2967806-2973707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017822265625 3 360.514931 1078.52296 NaN NaN NaN NaN NaN NaN NaN 61.941 1 58.98 58.48 59.48 -2.9614 0 0 0 0.23508 1 11944 11944 7.1017 2.5729 1 11146 2608 7061 7064 11427 11427 -0.013156715769810035 EEMPHLARP 9 Unmodified _EEMPHLARP_ 0 0 0 ENST00000536066.1_1_12:2967806-2973707:-|nuORF;FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1 ENST00000536066.1_1_12:2967806-2973707:-|nuORF ENST00000536066.1_1_12:2967806-2973707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20208740234375 3 360.514931 1078.52296 NaN NaN NaN NaN NaN NaN NaN 62.194 1 59.233 58.733 59.733 -2.9614 0 0 0 0.23508 1 11999 11999 7.609 3.6646 1 11147 2608 7061 7064 11428 11428 -0.013156715769810035 EEMPHLARP 9 Unmodified _EEMPHLARP_ 0 0 0 ENST00000536066.1_1_12:2967806-2973707:-|nuORF;FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1 ENST00000536066.1_1_12:2967806-2973707:-|nuORF ENST00000536066.1_1_12:2967806-2973707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2669982910156 3 360.514931 1078.52296 NaN NaN NaN NaN NaN NaN NaN 62.199 1 59.237 58.737 59.737 -2.9614 0 0 0 0.23508 1 12000 12000 2.4985 0.41248 1 11148 2608 7061 7064 11429 11429 -0.013156715769810035 EEMPLLHVN 9 Unmodified _EEMPLLHVN_ 0 0 0 REV__SSH2|p.K799Nfs*18|1|0.32|ENSG00000141298|chr17:29632716-29632716|T/-|frameshift_variant REV__SSH2|p.K799Nfs*18|1|0.32|ENSG00000141298|chr17:29632716-29632716|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2593383789062 2 541.270967 1080.52738 0.32983 0.00017852 -2.8668 -0.0015517 -2.537 -0.0013732 541.7711504874918 125.89 0.10321 121.29 121.22 121.33 -4.5984 4 2 2 0 0 0 0.62102 1 24807 24807 11.64 1.4569 1 478840 + 11149 16619 7062 7065 11430 11430 -0.009662071540560646 EEMPLLHVN 9 Unmodified _EEMPLLHVN_ 0 0 0 REV__SSH2|p.K799Nfs*18|1|0.32|ENSG00000141298|chr17:29632716-29632716|T/-|frameshift_variant REV__SSH2|p.K799Nfs*18|1|0.32|ENSG00000141298|chr17:29632716-29632716|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.270967 1080.52738 0.32983 0.00017852 -2.8668 -0.0015517 -2.537 -0.0013732 541.7711504874918 125.89 0.10321 121.29 121.22 121.33 -4.5984 0 0 NaN 11.64 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 478840 + 11150 16619 7062 7065 -0.009662071540560646 EEMPQVHTP 9 Oxidation (M) _EEM(Oxidation (M))PQVHTP_ EEM(1)PQVHTP EEM(68)PQVHTP 0 0 1 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7930297851562 2 542.242406 1082.47026 0.34201 0.00018545 -0.33428 -0.00018126 0.0077361 4.1948E-06 542.2422792157975 33.046 3.9601 33.046 30.66 34.62 0 285 113 4 0 0 0 0.057505 1 5905 5905 68.081 35.775 1 33739000 11151 2670 7063 7066 11431 11431 31 -0.06767674430443549 EEMPQVHTP 9 Oxidation (M) _EEM(Oxidation (M))PQVHTP_ EEM(1)PQVHTP EEM(68)PQVHTP 0 0 1 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7763061523438 2 542.242406 1082.47026 0.089802 4.8695E-05 -0.15341 -8.3186E-05 -0.063609 -3.4491E-05 542.2423742722256 34.403 2.1542 32.086 30.627 32.781 -2.3175 192 61 4 0 0 0 0.057505 2 6354 6354;6440 68.081 35.775 1 25693000 11152 2670 7063 7066 11432;11433 11432 31 -0.06767674430443549 EEMPQVHTP 9 Oxidation (M) _EEM(Oxidation (M))PQVHTP_ EEM(1)PQVHTP EEM(42)PQVHTP 0 0 1 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7740478515625 2 542.242406 1082.47026 -0.098646 -5.349E-05 0.21016 0.00011396 0.11152 6.0468E-05 542.2425697987348 35.373 2.0124 32.98 32.527 34.54 -2.3938 184 56 5 0 0 0 0.16619 1 6521 6521 41.84 13.353 1 25540000 11153 2670 7063 7066 11434 11434 31 -0.06767674430443549 EEMPQVHTP 9 Oxidation (M) _EEM(Oxidation (M))PQVHTP_ EEM(1)PQVHTP EEM(46)PQVHTP 0 0 1 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7718505859375 2 542.242406 1082.47026 0.45772 0.0002482 -0.55557 -0.00030126 -0.097853 -5.306E-05 542.2421648262508 34.335 2.1935 32.119 30.56 32.753 -2.2158 202 62 4 0 0 0 0.13708 1 6092 6092 46.021 27.886 1 24180000 11154 2670 7063 7066 11435 11435 31 -0.06767674430443549 EEMPQVHTP 9 Oxidation (M) _EEM(Oxidation (M))PQVHTP_ EEM(1)PQVHTP EEM(72)PQVHTP 0 0 1 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7745361328125 2 542.242406 1082.47026 0.4028 0.00021842 -0.28553 -0.00015482 0.11728 6.3593E-05 542.2423421549638 35.445 2.3822 33.169 32.556 34.938 -2.2766 190 67 4 0 0 0 0.04795 3 6206 6149;6206;6284 71.922 35.795 1 25983000 11155 2670 7063 7066 11436;11437;11438 11437 31 -0.06767674430443549 EEMQAGKH 8 Unmodified _EEMQAGKH_ 0 0 0 nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24798583984375 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 65.785 1 62.327 61.827 62.827 -3.4581 0 0 0 0.19492 1 12319 12319 26.341 0 1 11156 12241 7064 7067 11439 11439 -0.059801954278327685 EEMQSNVEV 9 Unmodified _EEMQSNVEV_ 0 0 0 ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1 ENST00000519278.5_1_8:134251123-134266883:-|nuORF ENST00000519278.5_1_8:134251123-134266883:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2733154296875 2 532.731871 1063.44919 0.18526 9.8696E-05 1.2568 0.00066954 1.4421 0.00076823 532.7315212541246 59.753 0.67087 56.53 56.289 56.96 -3.2237 27 18 2 0 0 0 0.52242 1 11153 11153 36.127 15.673 1 1390300 11157 2235 7065 7068 11440 11440 -0.0799968452995472 EEMRQLLY 8 Unmodified _EEMRQLLY_ 0 0 0 REV__SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant REV__SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2782592773438 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 53.87 1 50.986 50.486 51.486 -2.8837 0 0 0 0.21181 1 10266 10266 15.768 0 1 + 11158 15455 7066 7069 11441 11441 -0.009662071540560646 EEMRQLLY 8 Unmodified _EEMRQLLY_ 0 0 0 REV__SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant REV__SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2719116210938 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 54.171 1 51.036 50.536 51.536 -3.1352 0 0 0 0.21181 1 9986 9986 15.768 2.2603 1 + 11159 15455 7066 7069 11442 11442 -0.009662071540560646 EEMRQLLY 8 Unmodified _EEMRQLLY_ 0 0 0 REV__SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant REV__SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2708740234375 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 54.128 1 50.99 50.49 51.49 -3.1377 0 0 0 0.21181 1 10008 10008 15.768 0 1 + 11160 15455 7066 7069 11443 11443 -0.009662071540560646 EEMRQVRHK 9 Unmodified _EEMRQVRHK_ 0 0 0 REV__ENST00000514616.5_1_5:137194760-137194853:-|nuORF REV__ENST00000514616.5_1_5:137194760-137194853:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.2994689941406 3 404.880384 1211.61932 -0.59495 -0.00024088 -0.30038 -0.00012162 -0.89533 -0.0003625 404.8802133837256 79.663 0.55402 75.987 75.764 76.318 -3.676 29 15 3 0 0 0 0.72996 1 15199 15199 4.897 1.0207 1 1528300 + 11161 22577 7067 7070 11444 11444 0.02197895982976661 EEMRQVRHK 9 Unmodified _EEMRQVRHK_ 0 0 0 REV__ENST00000514616.5_1_5:137194760-137194853:-|nuORF REV__ENST00000514616.5_1_5:137194760-137194853:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 404.880384 1211.61932 -0.075552 -3.0589E-05 -1.1645 -0.00047149 -1.2401 -0.00050208 404.8797980746298 79.884 0.7414 76.079 75.58 76.321 -3.8048 0.023061 -0.00048554 NaN 4.897 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1426400 + 11162 22577 7067 7070 0.02197895982976661 EEMRSVTK 8 Unmodified _EEMRSVTK_ 0 0 0 CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant;CENPE|p.S2121Efs*18|1|0.05|ENSG00000138778|chr4:103136302-103136303|-/TGCTC|frameshift_variant;CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant;nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.258056640625 2 490.247492 978.48043 NaN NaN NaN NaN NaN NaN NaN 35.106 1 32.853 32.353 33.353 -2.2527 0 0 0 0.21323 1 6176 6176 14.582 0 1 11163 483 7068 7071 11445 11445 -0.00967066705209163 EEMSLEVEK 9 Unmodified _EEMSLEVEK_ 0 0 0 REV__tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1 REV__tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7833251953125 2 547.257722 1092.50089 0.32374 0.00017717 1.0672 0.00058403 1.3909 0.0007612 547.2584676980215 67.538 0.45168 64.042 63.822 64.274 -3.4965 20 12 2 0 0 0 0.54354 1 12690 12690 16.942 2.3606 1 992780 + 11164 25253 7069 7072 11446 11446 -0.041659408360601446 EEMSSPSHY 9 Unmodified _EEMSSPSHY_ 0 0 0 REV__PDE6A|p.A811Gfs*10|1|0.37|ENSG00000132915|chr5:149863193-149863193|G/-|frameshift_variant REV__PDE6A|p.A811Gfs*10|1|0.37|ENSG00000132915|chr5:149863193-149863193|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2864990234375 2 533.710939 1065.40732 0.22276 0.00011889 0.56287 0.00030041 0.78563 0.0004193 533.7112988044195 38.663 0.35938 38.663 38.459 38.818 0 13 9 2 0 0 0 0.8204 1 7165 7165 13.508 13.508 1 591770 + 11165 16142 7070 7073 11447 11447 -0.12276240218488965 EEMSSPSHY 9 Unmodified _EEMSSPSHY_ 0 0 0 REV__PDE6A|p.A811Gfs*10|1|0.37|ENSG00000132915|chr5:149863193-149863193|G/-|frameshift_variant REV__PDE6A|p.A811Gfs*10|1|0.37|ENSG00000132915|chr5:149863193-149863193|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 533.710939 1065.40732 0.098793 5.2727E-05 1.1309 0.00060356 1.2297 0.00065629 533.7115707137237 41.599 0.34485 39.109 38.923 39.268 -2.4896 0.15305 0.00017741 NaN 13.508 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 502170 + 11166 16142 7070 7073 -0.12276240218488965 EEMTQEQEE 9 Unmodified _EEMTQEQEE_ 0 0 0 ENSG00000277322|ENST00000619213|GOLGA6L6 ENSG00000277322|ENST00000619213|GOLGA6L6 ENSG00000277322|ENST00000619213|GOLGA6L6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3323974609375 2 576.721701 1151.42885 0.2145 0.00012371 -2.3233 -0.0013399 -2.1088 -0.0012162 577.2215284170612 161.33 0.2157 156.53 156.42 156.63 -4.7952 6 5 2 0 0 0 0.84208 1 32082 32082 7.2892 2.96 1 1331900 11167 8034 7071 7074 11448 11448 -0.14080899980422146 EEMTWGLLS 9 Unmodified _EEMTWGLLS_ 0 0 0 REV__ENST00000499178.2_1_4:100010392-100023551:+|nuORF REV__ENST00000499178.2_1_4:100010392-100023551:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2678833007812 2 533.2497 1064.48485 NaN NaN NaN NaN NaN NaN NaN 126.76 1 126.76 126.26 127.26 0 0 0 0 0.23508 1 25016 25016 11.64 0.81637 1 + 11168 22422 7072 7075 11449 11449 -0.04481602282316999 EEMWRRMN 8 Unmodified _EEMWRRMN_ 0 0 0 ENSG00000116903|ENST00000366645|EXOC8 ENSG00000116903|ENST00000366645|EXOC8 ENSG00000116903|ENST00000366645|EXOC8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3238525390625 2 576.257868 1150.50118 NaN NaN NaN NaN NaN NaN NaN 116.89 1 112.3 111.8 112.8 -4.5815 0 0 0 0.21452 1 22426 22426 13.508 2.684 1 11169 2962 7073 7076 11450 11450 -0.06804799597193778 EEMYRVDHY 9 Unmodified _EEMYRVDHY_ 0 0 0 ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD ENSG00000049239|ENST00000377403|H6PD ENSG00000049239|ENST00000377403|H6PD MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7571411132812 2 621.266413 1240.51827 0.69928 0.00043444 0.63294 0.00039322 1.3322 0.00082767 621.2669859313975 48.364 0.59773 48.364 48.139 48.736 0 40 16 3 0 0 0 0.66537 1 9128 9128 8.5933 1.304 1 7140400 11170 1235 7074 7077 11451 11451 -0.09236600510394055 EEMYRVDHY 9 Unmodified _EEMYRVDHY_ 0 0 0 ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD ENSG00000049239|ENST00000377403|H6PD ENSG00000049239|ENST00000377403|H6PD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7713623046875 2 621.266413 1240.51827 0.13251 8.2327E-05 0.74765 0.00046449 0.88017 0.00054682 621.2673556770152 51.587 0.73039 48.535 48.24 48.97 -3.0517 52 20 4 0 0 0 0.66537 2 9514 9514;9551 8.5933 1.304 1 2908400 11171 1235 7074 7077 11452;11453 11452 -0.09236600510394055 EEMYRVDHY 9 Unmodified _EEMYRVDHY_ 0 0 0 ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD ENSG00000049239|ENST00000377403|H6PD ENSG00000049239|ENST00000377403|H6PD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 621.266413 1240.51827 0.80602 0.00050075 0.38251 0.00023764 1.1885 0.0007384 621.2669173522243 51.419 0.75964 48.537 48.245 49.004 -2.8824 0.028671 -0.00029592 NaN 8.5933 52 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3193700 11172 1235 7074 7077 -0.09236600510394055 EEMYRVDHY 9 Unmodified _EEMYRVDHY_ 0 0 0 ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD ENSG00000049239|ENST00000377403|H6PD ENSG00000049239|ENST00000377403|H6PD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 621.266413 1240.51827 0.28697 0.00017828 0.7678 0.00047701 1.0548 0.00065529 621.2672176033295 51.641 0.73255 48.595 48.262 48.995 -3.0453 0.087409 0.00018281 NaN 8.5933 55 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3655500 11173 1235 7074 7077 -0.09236600510394055 EENAEMTDQY 10 Unmodified _EENAEMTDQY_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1;BMS1|p.L617Afs*20|1|0.26|ENSG00000165733|chr10:42797085-42797086|-/A|frameshift_variant ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 410.825439453125 3 410.492409 1228.4554 0.048648 1.997E-05 -1.4762 -0.00060597 -1.4275 -0.000586 410.49177627752107 56.617 0.49249 53.428 53.231 53.723 -3.1895 17 13 2 0 0 0 0.47611 1 10499 10499 3.5927 0 1 1342100 11174 5659 7075 7078 11454 11454 -0.1496921108910101 EENDHKVFY 9 Unmodified _EENDHKVFY_ 0 0 0 ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2528686523438 2 590.767103 1179.51965 0.49335 0.00029146 -2.235 -0.0013204 -1.7416 -0.0010289 590.7662173837684 58.924 0.49489 55.673 55.383 55.878 -3.2517 19 13 2 0 0 0 0.8319 1 10969 10969 12.532 8.2023 1 1069800 11175 2087 7076 7079 11455 11455 -0.06292643150004551 EENDHKVFY 9 Unmodified _EENDHKVFY_ 0 0 0 ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 590.767103 1179.51965 0.2301 0.00013593 -4.1758 -0.0024669 -3.9457 -0.002331 590.7652741042277 55.484 0.74771 55.484 55.122 55.87 0 -0.098325 -0.00071222 NaN 12.532 27 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1574700 11176 2087 7076 7079 -0.06292643150004551 EENDHKVFY 9 Unmodified _EENDHKVFY_ 0 0 0 ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 590.767103 1179.51965 0.11207 6.6208E-05 -3.6726 -0.0021697 -3.5606 -0.0021035 590.7654430672466 58.796 0.52698 55.591 55.334 55.861 -3.2052 0.008382 -0.00011776 NaN 12.532 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1484000 11177 2087 7076 7079 -0.06292643150004551 EENDLPWNY 9 Unmodified _EENDLPWNY_ 0 0 0 tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1 tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1 tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2489624023438 2 590.251286 1178.48802 NaN NaN NaN NaN NaN NaN NaN 56.616 1 53.722 53.222 54.222 -2.8944 0 0 0 0.23508 1 10852 10852 7.2892 1.0834 1 11178 26127 7077 7080 11456 11456 -0.0940863590394656 EENDLPWNY 9 Unmodified _EENDLPWNY_ 0 0 0 tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1 tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1 tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2534790039062 2 590.251286 1178.48802 NaN NaN NaN NaN NaN NaN NaN 62.21 1 58.841 58.341 59.341 -3.3694 0 0 0 0.23508 1 11609 11609 7.2892 2.5332 1 11179 26127 7077 7080 11457 11457 -0.0940863590394656 EENEDGDESE 10 Unmodified _EENEDGDESE_ 0 0 0 REV__nc|ENSG00000108312|P17480-2|UBTF REV__nc|ENSG00000108312|P17480-2|UBTF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3392944335938 2 576.694194 1151.37384 0.030266 1.7454E-05 -3.4178 -0.001971 -3.3875 -0.0019535 576.6928485745436 115.4 0.16945 110.92 110.81 110.98 -4.4726 6 4 2 0 0 0 0.91149 1 22746 22746 3.5965 0 1 2465400 + 11180 15114 7078 7081 11458 11458 -0.1957961524735765 EENEIKLTA 9 Unmodified _EENEIKLTA_ 0 0 0 REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6802368164062 2 523.771854 1045.52915 -0.36516 -0.00019126 -0.45076 -0.0002361 -0.81593 -0.00042736 523.7719469993783 34.76 0.59198 32.507 32.254 32.846 -2.2527 38 16 3 0 0 0 0.40602 2 6159 6159;6164 25.399 0 1 2588100 + 11181 19228 7079 7082 11459;11460 11459 0.008211251355078275 EENGEEEEE 9 Unmodified _EENGEEEEE_ 0 0 0 REV__ENST00000461911.1_1_2:219132163-219134845:-|nuORF REV__ENST00000461911.1_1_2:219132163-219134845:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7760620117188 2 547.19383 1092.37311 -0.31757 -0.00017377 0.23507 0.00012863 -0.082506 -4.5147E-05 547.1940561064912 23.556 0.2446 21.768 21.699 21.944 -1.7886 10 6 2 0 0 0 0.84208 1 3794 3794 11.64 0 1 787200 + 11182 15898 7080 7083 11461 11461 -0.16938409896397388 EENGGVVQV 9 Unmodified _EENGGVVQV_ 0 0 0 ENSG00000104427|ENST00000263849|ZC2HC1A;ZC2HC1A|p.K45Nfs*20|1|0.08|ENSG00000104427|chr8:78678599-78678599|A/-|frameshift_variant;ENST00000521873.1_1_8:79578383-79590923:+|nuORF ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2495422363281 2 465.729989 929.445425 -0.16342 -7.611E-05 -0.51537 -0.00024003 -0.6788 -0.00031614 465.73009958750293 57.888 0.94559 54.977 54.293 55.238 -2.9105 48 26 3 0 0 0 0.32263 1 11116 11116 37.974 0 1 1358200 11183 2236 7081 7084 11462 11462 -0.022119862415138414 EENGGVVQV 9 Unmodified _EENGGVVQV_ 0 0 0 ENSG00000104427|ENST00000263849|ZC2HC1A;ZC2HC1A|p.K45Nfs*20|1|0.08|ENSG00000104427|chr8:78678599-78678599|A/-|frameshift_variant;ENST00000521873.1_1_8:79578383-79590923:+|nuORF ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2491760253906 2 465.729989 929.445425 0.038663 1.8006E-05 -0.62309 -0.00029019 -0.58443 -0.00027218 465.7299843298166 58.137 1.0289 54.885 54.319 55.348 -3.2517 46 28 2 0 0 0 0.62921 1 10844 10844 30.637 10.183 1 1163000 11184 2236 7081 7084 11463 11463 -0.022119862415138414 EENGGVVQV 9 Unmodified _EENGGVVQV_ 0 0 0 ENSG00000104427|ENST00000263849|ZC2HC1A;ZC2HC1A|p.K45Nfs*20|1|0.08|ENSG00000104427|chr8:78678599-78678599|A/-|frameshift_variant;ENST00000521873.1_1_8:79578383-79590923:+|nuORF ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2486572265625 2 465.729989 929.445425 0.080337 3.7415E-05 -0.74042 -0.00034484 -0.66008 -0.00030742 465.7299427587698 58.201 0.71958 54.996 54.579 55.299 -3.2052 36 20 2 0 0 0 0.47479 1 10849 10849 30.637 10.183 1 824420 11185 2236 7081 7084 11464 11464 -0.022119862415138414 EENGMDQEN 9 Unmodified _EENGMDQEN_ 0 0 0 ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 ENSG00000024048|ENST00000372901|UBR2 ENSG00000024048|ENST00000372901|UBR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2867431640625 2 533.19311 1064.37167 0.32154 0.00017144 0.54774 0.00029205 0.86928 0.00046349 533.1932574879249 41.995 0.60229 39.344 38.934 39.537 -2.651 24 16 2 0 0 0 0.87511 1 7545 7545 7.2892 5.8073 1 743120 11186 1135 7082 7085 11465 11465 -0.15794322466149424 EENGYNLENY 10 Unmodified _EENGYNLENY_ 0 0 0 tr|U7T3K1|U7T3K1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00306PE=4SV=1 tr|U7T3K1|U7T3K1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00306PE=4SV=1 tr|U7T3K1|U7T3K1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00306PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7631225585938 2 622.756932 1243.49931 NaN NaN NaN NaN NaN NaN NaN 58.998 1 55.793 55.293 56.293 -3.2052 0 0 0 0.22588 1 11015 11015 10.074 0.6908 1 11187 26407 7083 7086 11466 11466 -0.11269858600462612 EENIDVVI 8 Unmodified _EENIDVVI_ 0 0 0 ENST00000480136.1_1_1:171303670-171311201:+|nuORF;FMO4|p.F337Lfs*22|1|0.15|ENSG00000076258|chr1:171334589-171334589|T/-|frameshift_variant;FMO4|p.A520Hfs*18|1|0.18|ENSG00000076258|chr1:171341715-171341715|G/-|frameshift_variant;ENSG00000076258|ENST00000367749|FMO4 ENST00000480136.1_1_1:171303670-171311201:+|nuORF ENST00000480136.1_1_1:171303670-171311201:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.241943359375 2 465.742565 929.470577 -0.13271 -6.1807E-05 -0.23757 -0.00011065 -0.37028 -0.00017245 465.74258415902153 108.26 0.58217 103.85 103.44 104.02 -4.4121 27 16 2 0 0 0 0.58903 1 20789 20789 38.151 0 1 703480 11188 1537 7084 7087 11467 11467 0.0030206856106360647 EENIDVVI 8 Unmodified _EENIDVVI_ 0 0 0 ENST00000480136.1_1_1:171303670-171311201:+|nuORF;FMO4|p.F337Lfs*22|1|0.15|ENSG00000076258|chr1:171334589-171334589|T/-|frameshift_variant;FMO4|p.A520Hfs*18|1|0.18|ENSG00000076258|chr1:171341715-171341715|G/-|frameshift_variant;ENSG00000076258|ENST00000367749|FMO4 ENST00000480136.1_1_1:171303670-171311201:+|nuORF ENST00000480136.1_1_1:171303670-171311201:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 465.742565 929.470577 0.68631 0.00031965 -1.0151 -0.00047276 -0.32875 -0.00015311 465.74232884616947 107.96 1.1566 103.83 103.59 104.75 -4.135 -0.01084 -0.00023637 NaN 23.148 38 32 2 NaN NaN NaN NaN 0 NaN NaN 0 739640 11189 1537 7084 7087 0.0030206856106360647 EENIVKDL 8 Unmodified _EENIVKDL_ 0 0 0 ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2 ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2359313964844 2 480.25584 958.497126 -0.029857 -1.4339E-05 -3.1673 -0.0015211 -3.1971 -0.0015354 480.25583672712906 34.581 0.61295 34.581 34.312 34.925 0 55 17 4 0 0 0 0.56049 1 6357 6357 24.674 0.65332 1 3935700 11190 912 7085 7088 11468 11468 0.016217574523693656 EENKVRQY 8 Unmodified _EENKVRQY_ 0 0 0 nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR nc|ENSG00000001626|P13569-2|CFTR nc|ENSG00000001626|P13569-2|CFTR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2698364257812 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 38.928 1 38.928 38.428 39.428 0 0 0 0 0.21323 1 7222 7222 14.582 1.0738 1 11191 958 7086 7089 11469 11469 -0.004609195675357114 EENKVRQY 8 Unmodified _EENKVRQY_ 0 0 0 nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR nc|ENSG00000001626|P13569-2|CFTR nc|ENSG00000001626|P13569-2|CFTR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.271240234375 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 42.308 1 39.589 39.089 40.089 -2.7191 0 0 0 0.21323 1 7910 7910 14.582 1.0738 1 11192 958 7086 7089 11470 11470 -0.004609195675357114 EENKVRQY 8 Unmodified _EENKVRQY_ 0 0 0 nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR nc|ENSG00000001626|P13569-2|CFTR nc|ENSG00000001626|P13569-2|CFTR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2702026367188 2 533.269813 1064.52507 0.086318 4.6031E-05 0.025979 1.3854E-05 0.1123 5.9885E-05 533.2697427182956 41.818 0.83908 39.212 38.701 39.54 -2.606 50 23 3 0 0 0 0.69887 2 7432 7432;7568 14.582 1.0738 1 6188700 11193 958 7086 7089 11471;11472 11471 -0.004609195675357114 EENLDCPNL 9 Unmodified _EENLDCPNL_ 0 0 0 CBX1|p.D62N|1|0.11|ENSG00000108468|chr17:48076135-48076135|C/T|missense_variant CBX1|p.D62N|1|0.11|ENSG00000108468|chr17:48076135-48076135|C/T|missense_variant CBX1|p.D62N|1|0.11|ENSG00000108468|chr17:48076135-48076135|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.68115234375 2 523.726589 1045.43863 NaN NaN NaN NaN NaN NaN NaN 128.51 1 123.77 123.27 124.27 -4.7408 0 0 0 0.23508 1 24731 24731 4.756 0 1 11194 401 7087 7090 11473 11473 -0.08227667184405618 EENLLQQVA 9 Unmodified _EENLLQQVA_ 0 0 0 ENST00000479037.5_1_2:230672327-230744801:-|nuORF;TRIP12|p.N880Kfs*36|1|0.21|ENSG00000153827|chr2:229804013-229804014|-/T|frameshift_variant;TRIP12|p.S1195Lfs*24|6|0.27|ENSG00000153827|chr2:229796599-229796599|A/-|frameshift_variant;TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12 ENST00000479037.5_1_2:230672327-230744801:-|nuORF ENST00000479037.5_1_2:230672327-230744801:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2637329101562 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 123.44 1 118.87 118.37 119.37 -4.5757 0 0 0 0.16777 1 24331 24331 22.736 10.496 1 11195 4981 7088 7091 11474 11474 0.009925448553985916 EENLLQQVA 9 Unmodified _EENLLQQVA_ 0 0 0 ENST00000479037.5_1_2:230672327-230744801:-|nuORF;TRIP12|p.N880Kfs*36|1|0.21|ENSG00000153827|chr2:229804013-229804014|-/T|frameshift_variant;TRIP12|p.S1195Lfs*24|6|0.27|ENSG00000153827|chr2:229796599-229796599|A/-|frameshift_variant;TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12 ENST00000479037.5_1_2:230672327-230744801:-|nuORF ENST00000479037.5_1_2:230672327-230744801:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2637329101562 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 123.47 1 118.89 118.39 119.39 -4.5757 0 0 0 0.13259 1 24334 24334 32.786 10.049 1 11196 4981 7088 7091 11475 11475 0.009925448553985916 EENLLQQVA 9 Unmodified _EENLLQQVA_ 0 0 0 ENST00000479037.5_1_2:230672327-230744801:-|nuORF;TRIP12|p.N880Kfs*36|1|0.21|ENSG00000153827|chr2:229804013-229804014|-/T|frameshift_variant;TRIP12|p.S1195Lfs*24|6|0.27|ENSG00000153827|chr2:229796599-229796599|A/-|frameshift_variant;TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12 ENST00000479037.5_1_2:230672327-230744801:-|nuORF ENST00000479037.5_1_2:230672327-230744801:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2713623046875 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 123.65 1 119.07 118.57 119.57 -4.5757 0 0 0 0.19687 1 24374 24374 8.1555 1.9497 1 11197 4981 7088 7091 11476 11476 0.009925448553985916 EENLLQQVA 9 Unmodified _EENLLQQVA_ 0 0 0 ENST00000479037.5_1_2:230672327-230744801:-|nuORF;TRIP12|p.N880Kfs*36|1|0.21|ENSG00000153827|chr2:229804013-229804014|-/T|frameshift_variant;TRIP12|p.S1195Lfs*24|6|0.27|ENSG00000153827|chr2:229796599-229796599|A/-|frameshift_variant;TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12 ENST00000479037.5_1_2:230672327-230744801:-|nuORF ENST00000479037.5_1_2:230672327-230744801:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2714233398438 2 522.272021 1042.52949 -0.26718 -0.00013954 -0.29643 -0.00015482 -0.56361 -0.00029436 522.7738172186863 123.77 0.4705 119.04 118.82 119.29 -4.731 17 12 2 0 0 0 0.45972 2 23753 23753;23801 8.1555 1.9497 1 749680 11198 4981 7088 7091 11477;11478 11477 0.009925448553985916 EENLLQQVA 9 Unmodified _EENLLQQVA_ 0 0 0 ENST00000479037.5_1_2:230672327-230744801:-|nuORF;TRIP12|p.N880Kfs*36|1|0.21|ENSG00000153827|chr2:229804013-229804014|-/T|frameshift_variant;TRIP12|p.S1195Lfs*24|6|0.27|ENSG00000153827|chr2:229796599-229796599|A/-|frameshift_variant;TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12 ENST00000479037.5_1_2:230672327-230744801:-|nuORF ENST00000479037.5_1_2:230672327-230744801:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.271728515625 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 123.7 1 119.1 118.6 119.6 -4.5926 0 0 0 0.12107 1 23809 23809 29.082 11.969 1 11199 4981 7088 7091 11479 11479 0.009925448553985916 EENLVWIY 8 Unmodified _EENLVWIY_ 0 0 0 REV__ENSG00000153982|ENST00000284116|GDPD1 REV__ENSG00000153982|ENST00000284116|GDPD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2643432617188 2 533.266207 1064.51786 NaN NaN NaN NaN NaN NaN NaN 145.67 1 140.56 140.06 141.06 -5.1108 0 0 0 0.21181 1 28154 28154 15.768 2.2603 1 + 11200 17162 7089 7092 11480 11480 -0.01181652167952052 EENNGSQFY 9 Unmodified _EENNGSQFY_ 0 0 0 REV__ENSG00000047597|ENST00000378616|XK REV__ENSG00000047597|ENST00000378616|XK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.779296875 2 544.219985 1086.42542 0.037067 2.0172E-05 -0.21073 -0.00011468 -0.17366 -9.4509E-05 544.2196659990782 104.3 0.57693 100.08 99.791 100.37 -4.2183 27 16 2 0 0 0 0.86532 1 20567 20567 8.5933 6.749 1 3680800 + 11201 14066 7090 7093 11481 11481 -0.11433781972141333 EENNGSQFY 9 Unmodified _EENNGSQFY_ 0 0 0 REV__ENSG00000047597|ENST00000378616|XK REV__ENSG00000047597|ENST00000378616|XK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.793701171875 2 544.219985 1086.42542 0.18278 9.9471E-05 -0.34552 -0.00018804 -0.16274 -8.8567E-05 544.2196981318333 104.44 0.62331 100.09 99.798 100.42 -4.346 29 17 2 0 0 0 0.86532 1 20044 20044 4.756 0.81161 1 3854300 + 11202 14066 7090 7093 11482 11482 -0.11433781972141333 EENNGSQFY 9 Unmodified _EENNGSQFY_ 0 0 0 REV__ENSG00000047597|ENST00000378616|XK REV__ENSG00000047597|ENST00000378616|XK MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 544.219985 1086.42542 0.77676 0.00042273 -0.84215 -0.00045832 -0.065397 -3.559E-05 544.2194218341182 104.07 0.60761 100.02 99.735 100.34 -4.0543 0.036875 -0.00027808 NaN 8.5933 33 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2799400 + 11203 14066 7090 7093 -0.11433781972141333 EENPDLQEA 9 Unmodified _EENPDLQEA_ 0 0 0 nc|ENSG00000104381|Q8TB36-2|GDAP1;ENSG00000104381|ENST00000220822|GDAP1 nc|ENSG00000104381|Q8TB36-2|GDAP1 nc|ENSG00000104381|Q8TB36-2|GDAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2803955078125 2 522.727643 1043.44073 0.22655 0.00011842 -0.15189 -7.9398E-05 0.074653 3.9023E-05 522.727543147797 35.921 0.79887 35.921 35.554 36.353 0 57 22 3 0 0 0 0.034725 1 6639 6639 92.653 36.476 1 9233700 11204 2233 7091 7094 11483 11483 -0.0792491517495364 EENPDLQEA 9 Unmodified _EENPDLQEA_ 0 0 0 nc|ENSG00000104381|Q8TB36-2|GDAP1;ENSG00000104381|ENST00000220822|GDAP1 nc|ENSG00000104381|Q8TB36-2|GDAP1 nc|ENSG00000104381|Q8TB36-2|GDAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2633056640625 2 522.727643 1043.44073 -0.535 -0.00027966 0.62185 0.00032506 0.086842 4.5395E-05 522.7279316106736 38.378 0.86766 35.829 35.529 36.396 -2.5491 60 24 3 0 0 0 6.9307E-11 1 7153 7153 171.09 56.437 1 13468000 11205 2233 7091 7094 11484 11484 -0.0792491517495364 EENPDLQEA 9 Unmodified _EENPDLQEA_ 0 0 0 nc|ENSG00000104381|Q8TB36-2|GDAP1;ENSG00000104381|ENST00000220822|GDAP1 nc|ENSG00000104381|Q8TB36-2|GDAP1 nc|ENSG00000104381|Q8TB36-2|GDAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2783203125 2 522.727643 1043.44073 -0.59688 -0.000312 0.72506 0.00037901 0.12819 6.7007E-05 522.727997979975 38.433 0.70633 35.991 35.594 36.301 -2.4419 49 19 3 0 0 0 0.01155 1 6862 6862 126.57 41.294 1 8299900 11206 2233 7091 7094 11485 11485 -0.0792491517495364 EENPDLQEA 9 Unmodified _EENPDLQEA_ 0 0 0 nc|ENSG00000104381|Q8TB36-2|GDAP1;ENSG00000104381|ENST00000220822|GDAP1 nc|ENSG00000104381|Q8TB36-2|GDAP1 nc|ENSG00000104381|Q8TB36-2|GDAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6905517578125 2 522.727643 1043.44073 0.23625 0.00012349 -0.05575 -2.9142E-05 0.1805 9.4352E-05 522.7275639466212 38.38 0.66187 35.975 35.639 36.301 -2.4049 49 18 3 0 0 0 0.029139 2 6850 6803;6850 82.529 26.352 1 6721100 11207 2233 7091 7094 11486;11487 11487 -0.0792491517495364 EENPESWKLE 10 Unmodified _EENPESWKLE_ 0 0 0 REV__ENST00000401028.2_1_1:91794740-91794929:+|nuORF REV__ENST00000401028.2_1_1:91794740-91794929:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7705688476562 2 630.790775 1259.567 0.40809 0.00025742 -2.1704 -0.001369 -1.7623 -0.0011116 630.7912038178514 152.21 0.18192 152.21 152.09 152.27 0 5 4 2 0 0 0 0.90598 1 30464 30464 5.7319 3.8876 1 1576000 + 11208 18032 7092 7095 11488 11488 -0.05240408669669705 EENPKREDY 9 Unmodified _EENPKREDY_ 0 0 0 ENSG00000117360|ENST00000324862|PRPF3;ENST00000519029.1_1_8:67896909-67897419:-|nuORF;ENST00000467329.5_1_1:150300781-150316915:+|nuORF ENSG00000117360|ENST00000324862|PRPF3 ENSG00000117360|ENST00000324862|PRPF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2669067382812 2 590.267467 1178.52038 NaN NaN NaN NaN NaN NaN NaN 55.251 1 52.115 51.615 52.615 -3.1352 0 0 0 0.13725 1 10208 10208 6.4869 1.771 1 11209 2980 7093 7096 11489 11489 -0.06173848500952772 EENPKREDY 9 Unmodified _EENPKREDY_ 0 0 0 ENSG00000117360|ENST00000324862|PRPF3;ENST00000519029.1_1_8:67896909-67897419:-|nuORF;ENST00000467329.5_1_1:150300781-150316915:+|nuORF ENSG00000117360|ENST00000324862|PRPF3 ENSG00000117360|ENST00000324862|PRPF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2635498046875 2 590.267467 1178.52038 NaN NaN NaN NaN NaN NaN NaN 147.86 1 142.71 142.21 143.21 -5.1557 0 0 0 0.23508 1 28617 28617 8.5933 0.68312 1 11210 2980 7093 7096 11490 11490 -0.06173848500952772 EENPLNHNV 9 Unmodified _EENPLNHNV_ 0 0 0 BCOR|p.P126Rfs*35|1|0.19|ENSG00000183337|chrX:40074969-40074969|G/-|frameshift_variant;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant;BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR BCOR|p.P126Rfs*35|1|0.19|ENSG00000183337|chrX:40074969-40074969|G/-|frameshift_variant BCOR|p.P126Rfs*35|1|0.19|ENSG00000183337|chrX:40074969-40074969|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2803344726562 2 533.25162 1064.48869 -0.018539 -9.8859E-06 -1.1612 -0.00061922 -1.1797 -0.0006291 533.2511104851235 48.897 1.0435 46.026 45.417 46.46 -2.8702 86 29 4 0 0 0 0.034704 3 9245 9236;9245;9276 78.149 36.055 1 10674000 11211 311 7094 7097 11491;11492;11493 11492 -0.04097796464247949 EENPLNHNV 9 Unmodified _EENPLNHNV_ 0 0 0 BCOR|p.P126Rfs*35|1|0.19|ENSG00000183337|chrX:40074969-40074969|G/-|frameshift_variant;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant;BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR BCOR|p.P126Rfs*35|1|0.19|ENSG00000183337|chrX:40074969-40074969|G/-|frameshift_variant BCOR|p.P126Rfs*35|1|0.19|ENSG00000183337|chrX:40074969-40074969|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2692260742188 2 533.25162 1064.48869 -0.024482 -1.3055E-05 -0.86071 -0.00045897 -0.88519 -0.00047203 533.2512085528545 49.043 1.1122 46.036 45.415 46.527 -3.0068 92 31 4 0 0 0 0.034704 1 9029 9029 78.149 27.294 1 8091600 11212 311 7094 7097 11494 11494 -0.04097796464247949 EENPYDLDA 9 Unmodified _EENPYDLDA_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant;nc|ENSG00000176102|Q12996-3|CSTF3;nc|ENSG00000176102|Q12996-2|CSTF3;ENST00000526480.1_1_11:33157665-33182871:-|nuORF;CSTF3|p.M122Nfs*6|1|0.25|ENSG00000176102|chr11:33106056-33106057|-/T|frameshift_variant;CSTF3|p.M205Nfs*3|1|0.32|ENSG00000176102|chr11:33103156-33103157|-/T|frameshift_variant ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2836303710938 2 533.222194 1064.42983 0.20845 0.00011115 -1.5765 -0.0008406 -1.368 -0.00072945 533.2224342813196 74.418 0.62942 74.418 74.186 74.816 0 48 17 5 0 0 0 0.76271 1 14478 14478 20.454 8.8133 1 3122100 11213 6448 7095 7098 11495 11495 -0.09980317549229767 EENPYDLDA 9 Unmodified _EENPYDLDA_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant;nc|ENSG00000176102|Q12996-3|CSTF3;nc|ENSG00000176102|Q12996-2|CSTF3;ENST00000526480.1_1_11:33157665-33182871:-|nuORF;CSTF3|p.M122Nfs*6|1|0.25|ENSG00000176102|chr11:33106056-33106057|-/T|frameshift_variant;CSTF3|p.M205Nfs*3|1|0.32|ENSG00000176102|chr11:33103156-33103157|-/T|frameshift_variant ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2862548828125 2 533.222194 1064.42983 0.081558 4.3488E-05 0.71272 0.00038004 0.79427 0.00042352 533.2223879159756 78.157 0.57065 74.693 74.359 74.929 -3.4633 26 15 2 0 0 0 0.31673 1 15238 15238 32.786 22.712 1 2321700 11214 6448 7095 7098 11496 11496 -0.09980317549229767 EENPYDLDA 9 Unmodified _EENPYDLDA_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant;nc|ENSG00000176102|Q12996-3|CSTF3;nc|ENSG00000176102|Q12996-2|CSTF3;ENST00000526480.1_1_11:33157665-33182871:-|nuORF;CSTF3|p.M122Nfs*6|1|0.25|ENSG00000176102|chr11:33106056-33106057|-/T|frameshift_variant;CSTF3|p.M205Nfs*3|1|0.32|ENSG00000176102|chr11:33103156-33103157|-/T|frameshift_variant ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2738647460938 2 533.222194 1064.42983 0.060114 3.2054E-05 0.42733 0.00022786 0.48745 0.00025992 533.2223842934529 78.312 0.67329 74.653 74.338 75.012 -3.6588 31 18 2 0 0 0 0.70212 1 14932 14932 16.149 9.9433 1 1685300 11215 6448 7095 7098 11497 11497 -0.09980317549229767 EENQEQLQDQ 10 Unmodified _EENQEQLQDQ_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76953125 2 630.770571 1259.52659 NaN NaN NaN NaN NaN NaN NaN 70.608 1 67.359 66.859 67.859 -3.2492 0 0 0 0.22588 1 13740 13740 9.3831 0.63772 1 11216 5449 7096 7099 11498 11498 -0.09279375060100392 EENRAVIE 8 Unmodified _EENRAVIE_ 0 0 0 ENSG00000162601|ENST00000472487|MYSM1;MYSM1|p.K307Nfs*5|1|0.35|ENSG00000162601|chr1:58682123-58682123|T/-|frameshift_variant;ENST00000489282.1_1_1:59158492-59165724:-|nuORF;ENST00000466774.5_1_1:59150886-59165724:-|nuORF ENSG00000162601|ENST00000472487|MYSM1 ENSG00000162601|ENST00000472487|MYSM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2455139160156 2 480.243264 958.471974 0.10569 5.0758E-05 -0.23092 -0.0001109 -0.12523 -6.014E-05 480.24322491720653 37.47 1.0936 35.122 34.413 35.506 -2.3479 66 31 3 0 0 0 0.68128 1 6576 6576 16.942 0 1 3888700 11217 5346 7097 7100 11499 11499 -0.008922973501967135 EENRAVIE 8 Unmodified _EENRAVIE_ 0 0 0 ENSG00000162601|ENST00000472487|MYSM1;MYSM1|p.K307Nfs*5|1|0.35|ENSG00000162601|chr1:58682123-58682123|T/-|frameshift_variant;ENST00000489282.1_1_1:59158492-59165724:-|nuORF;ENST00000466774.5_1_1:59150886-59165724:-|nuORF ENSG00000162601|ENST00000472487|MYSM1 ENSG00000162601|ENST00000472487|MYSM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2456970214844 2 480.243264 958.471974 0.18622 8.943E-05 -0.35587 -0.0001709 -0.16965 -8.1475E-05 480.2431377582071 37.432 1.0822 35.094 34.417 35.499 -2.3375 66 30 3 0 0 0 0.68128 1 6575 6575 16.942 0 1 3156500 11218 5346 7097 7100 11500 11500 -0.008922973501967135 EENRSAPPPV 10 Unmodified _EENRSAPPPV_ 0 0 0 REV__ENST00000430954.5_1_2:230744827-230786352:-|nuORF REV__ENST00000430954.5_1_2:230744827-230786352:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7933959960938 2 548.275095 1094.53564 0.1981 0.00010862 -0.11178 -6.1285E-05 0.086326 4.733E-05 548.2750446154625 18.815 0.58172 17.504 17.245 17.827 -1.3109 52 16 5 0 0 0 0.80147 1 3095 3095 26.268 18.659 1 24485000 + 11219 21614 7098 7101 11501 11501 -0.007849369131008643 EENSKIMI 8 Unmodified _EENSKIMI_ 0 0 0 nc|ENSG00000008118|Q96NX5-2|CAMK1G;ENSG00000008118|ENST00000361322|CAMK1G nc|ENSG00000008118|Q96NX5-2|CAMK1G nc|ENSG00000008118|Q96NX5-2|CAMK1G MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.775634765625 2 482.244418 962.474282 0.014509 6.9969E-06 0.068372 3.2972E-05 0.082881 3.9969E-05 482.244491566894 34.82 0.54735 34.82 34.517 35.064 0 23 15 2 0 0 0 0.9455 1 6382 6382 23.148 7.3012 1 1540600 11220 1036 7099 7102 11502 11502 -0.008455849367464907 EENSPDISA 9 Unmodified _EENSPDISA_ 0 0 0 ENSG00000135913|ENST00000258399|USP37;nc|ENSG00000135913|Q86T82-2|USP37 ENSG00000135913|ENST00000258399|USP37 ENSG00000135913|ENST00000258399|USP37 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.775634765625 2 481.209086 960.40362 -0.0074185 -3.5699E-06 -0.043222 -2.0799E-05 -0.05064 -2.4369E-05 481.20907703273946 34.749 1.034 34.749 34.312 35.346 0 54 29 2 0 0 0 0.19359 1 6382 6382 56.177 23.872 1 1491500 11221 3964 7100 7103 11503 11503 -0.07816586720707619 EENSPDISA 9 Unmodified _EENSPDISA_ 0 0 0 ENSG00000135913|ENST00000258399|USP37;nc|ENSG00000135913|Q86T82-2|USP37 ENSG00000135913|ENST00000258399|USP37 ENSG00000135913|ENST00000258399|USP37 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7688903808594 2 481.209086 960.40362 -0.36025 -0.00017336 0.48864 0.00023514 0.12839 6.1785E-05 481.2092321657762 36.971 1.2481 34.502 34.049 35.297 -2.4688 80 35 3 0 0 0 0.029716 1 6822 6822 81.89 41.933 1 2177800 11222 3964 7100 7103 11504 11504 -0.07816586720707619 EENSPDISA 9 Unmodified _EENSPDISA_ 0 0 0 ENSG00000135913|ENST00000258399|USP37;nc|ENSG00000135913|Q86T82-2|USP37 ENSG00000135913|ENST00000258399|USP37 ENSG00000135913|ENST00000258399|USP37 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2360534667969 2 481.209086 960.40362 0.12706 6.1144E-05 -0.041491 -1.9966E-05 0.085572 4.1178E-05 481.2090056025983 37.14 1.2336 34.793 34.208 35.442 -2.3479 75 35 3 0 0 0 0.061087 1 6547 6547 81.89 43.916 1 1918400 11223 3964 7100 7103 11505 11505 -0.07816586720707619 EENSYLLFDD 10 Unmodified _EENSYLLFDD_ 0 0 0 ENSG00000141642|ENST00000269466|ELAC1 ENSG00000141642|ENST00000269466|ELAC1 ENSG00000141642|ENST00000269466|ELAC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7717895507812 2 622.769508 1243.52446 NaN NaN NaN NaN NaN NaN NaN 35.99 1 35.99 35.49 36.49 0 0 0 0 2.8426 1 6624 6624 0.26539 0 1 11224 4390 7101 7104 11506 11506 -0.08755803797885164 EENTTKPYL 9 Unmodified _EENTTKPYL_ 0 0 0 BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2 BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.77197265625 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 35.965 1 35.965 35.465 36.465 0 0 0 0 0.22251 1 6619 6619 16.942 0 1 11225 328 7102 7105 11507 11507 -0.013868748644881634 EENTTTSTFDY 11 Unmodified _EENTTTSTFDY_ 0 0 0 REV__ENSG00000125703|ENST00000317868|ATG4C REV__ENSG00000125703|ENST00000317868|ATG4C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2171630859375 3 436.513979 1306.52011 -0.21709 -9.4763E-05 -0.68513 -0.00029907 -0.90222 -0.00039383 436.5139716938731 88.378 0.64228 84.585 84.126 84.769 -3.7926 30 17 3 0 0 0 0.76282 1 17297 17297 7.4771 3.6007 1 1665200 + 11226 15824 7103 7106 11508 11508 -0.12089313011460945 EENTTTSTFDY 11 Unmodified _EENTTTSTFDY_ 0 0 0 REV__ENSG00000125703|ENST00000317868|ATG4C REV__ENSG00000125703|ENST00000317868|ATG4C MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 436.513979 1306.52011 -0.21709 -9.4763E-05 -0.68513 -0.00029907 -0.90222 -0.00039383 436.5139716938731 88.378 0.64228 84.585 84.126 84.769 -3.7926 0.083677 -0.00040708 NaN 7.4771 30 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1665200 + 11227 15824 7103 7106 -0.12089313011460945 EENTTTSTFDY 11 Unmodified _EENTTTSTFDY_ 0 0 0 REV__ENSG00000125703|ENST00000317868|ATG4C REV__ENSG00000125703|ENST00000317868|ATG4C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 436.513979 1306.52011 0.00058105 2.5364E-07 -0.23423 -0.00010225 -0.23365 -0.00010199 436.5138340726404 88.168 0.34944 84.418 84.224 84.573 -3.7501 -0.083677 0.00018338 NaN 7.4771 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1455400 + 11228 15824 7103 7106 -0.12089313011460945 EENVLLGR 8 Unmodified _EENVLLGR_ 0 0 0 REV__ENSG00000145191|ENST00000648915|EIF2B5 REV__ENSG00000145191|ENST00000648915|EIF2B5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2552490234375 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 65.421 1 62.374 61.874 62.874 -3.047 0 0 0 0.21486 1 12663 12663 12.532 0 1 + 11229 16824 7104 7107 11509 11509 0.03068596892092046 EENYDNFY 8 Unmodified _EENYDNFY_ 0 0 0 PCDH17|p.N765Mfs*16|1|0.55|ENSG00000118946|chr13:57634836-57634836|A/-|frameshift_variant;PCDH17|p.E776Dfs*7|1|0.07|ENSG00000118946|chr13:57634873-57634874|-/TGATG|frameshift_variant;nc|ENSG00000118946|O14917-2|PCDH17;ENSG00000118946|ENST00000377918|PCDH17 PCDH17|p.N765Mfs*16|1|0.55|ENSG00000118946|chr13:57634836-57634836|A/-|frameshift_variant PCDH17|p.N765Mfs*16|1|0.55|ENSG00000118946|chr13:57634836-57634836|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7919311523438 2 547.209086 1092.40362 -0.074444 -4.0736E-05 -4.3597 -0.0023857 -4.4342 -0.0024264 547.2088876698056 108.26 0.09996 103.85 103.79 103.89 -4.4121 4 2 2 0 0 0 1.0095 1 20758 20758 10.183 3.9776 1 389500 11230 3054 7105 7108 11510 11510 -0.13888586720713647 EENYETYEKTY 11 Unmodified _EENYETYEKTY_ 0 0 0 REV__nc|ENSG00000124356|O95630-2|STAMBP REV__nc|ENSG00000124356|O95630-2|STAMBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.256103515625 3 490.208666 1467.60417 0.11627 5.6998E-05 -2.9764 -0.0014591 -2.8602 -0.0014021 490.5413760971656 65.574 0.19784 62.527 62.446 62.644 -3.047 7 5 2 0 0 0 0.96192 1 12678 12678 2.8433 0 1 722460 + 11231 15774 7106 7109 11511 11511 -0.11092781914589978 EENYFSDY 8 Unmodified _EENYFSDY_ 0 0 0 nc|ENSG00000182077|Q3KNS1|PTCHD3 nc|ENSG00000182077|Q3KNS1|PTCHD3 nc|ENSG00000182077|Q3KNS1|PTCHD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2867431640625 2 533.703637 1065.39272 0.28126 0.00015011 3.0429 0.001624 3.3241 0.0017741 534.2057806738744 41.93 0.49607 39.279 38.968 39.464 -2.651 21 10 4 0 0 0 1.0095 1 7545 7545 10.183 0 1 1190300 11232 12499 7107 7110 11512 11512 -0.13735989094993784 EEPCAAVQMMA 11 Unmodified _EEPCAAVQMMA_ 0 0 0 REV__ENST00000498666.5_1_21:46314678-46340855:-|nuORF REV__ENST00000498666.5_1_21:46314678-46340855:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2478637695312 2 590.245777 1178.477 NaN NaN NaN NaN NaN NaN NaN 28.326 1 28.326 27.826 28.826 0 0 0 0 0.23018 1 5027 5027 8.1555 1.4324 1 + 11233 17409 7108 7111 11513 11513 -0.10509820865740949 EEPCTDMVY 9 Unmodified _EEPCTDMVY_ 0 0 0 REV__tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1 REV__tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.774169921875 2 543.70955 1085.40455 NaN NaN NaN NaN NaN NaN NaN 124.4 1 119.83 119.33 120.33 -4.5757 0 0 0 0.23411 1 24531 24531 13.508 3.3245 1 + 11234 25270 7109 7112 11514 11514 -0.1347383166767031 EEPDHGALL 9 Unmodified _EEPDHGALL_ 0 0 0 ENSG00000090565|ENST00000262305|RAB11FIP3;nc|ENSG00000090565|O75154-3|RAB11FIP3;ENST00000483002.1_1_16:524982-539001:+|nuORF;nc|ENSG00000090565|O75154-2|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2655944824219 2 490.737814 979.461075 0.053392 2.6202E-05 0.064823 3.1811E-05 0.11821 5.8013E-05 490.73779142021397 75.109 0.55475 71.515 71.269 71.824 -3.594 16 15 2 0 0 0 0.65155 1 14241 14241 15.847 5.7733 1 675690 11235 1788 7110 7113 11515 11515 -0.02947699724472841 EEPDHGALLL 10 Unmodified _EEPDHGALLL_ 0 0 0 ENSG00000090565|ENST00000262305|RAB11FIP3;nc|ENSG00000090565|O75154-3|RAB11FIP3;ENST00000483002.1_1_16:524982-539001:+|nuORF;nc|ENSG00000090565|O75154-2|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7929077148438 2 547.279846 1092.54514 0.6673 0.0003652 0.80726 0.0004418 1.4746 0.00080699 547.7819615596186 77.782 0.72989 77.782 77.392 78.122 0 42 20 3 0 0 0 0.59928 1 15189 15189 19.257 5.7491 1 3331200 11236 1788 7111 7114 11516 11516 0.002568313724395921 EEPDHGALLL 10 Unmodified _EEPDHGALLL_ 0 0 0 ENSG00000090565|ENST00000262305|RAB11FIP3;nc|ENSG00000090565|O75154-3|RAB11FIP3;ENST00000483002.1_1_16:524982-539001:+|nuORF;nc|ENSG00000090565|O75154-2|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7823486328125 2 547.279846 1092.54514 0.20581 0.00011263 1.2748 0.00069765 1.4806 0.00081028 547.7822824195247 81.286 0.82834 77.729 77.308 78.136 -3.557 37 23 2 0 0 0 0.79872 1 15951 15951 25.399 10.561 1 3351400 11237 1788 7111 7114 11517 11517 0.002568313724395921 EEPDKLEEKTE 11 Unmodified _EEPDKLEEKTE_ 0 0 0 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.1136169433594 3 449.548912 1345.62491 -0.15195 -6.8309E-05 0.82621 0.00037142 0.67426 0.00030311 449.549310202016 18.504 0.55073 17.193 17.002 17.553 -1.3109 58 15 6 0 0 0 0.73684 1 3064 3064 9.2438 3.0519 1 50027000 11238 4906 7112 7115 11518 11518 -0.03408191534890648 EEPDKLEEKTE 11 Unmodified _EEPDKLEEKTE_ 0 0 0 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 449.548912 1345.62491 0.15723 7.0684E-05 0.6423 0.00028875 0.79954 0.00035943 449.54921169189276 17.119 0.4545 17.119 16.924 17.378 0 -0.035255 -0.0002837 NaN 9.2438 45 12 6 NaN NaN NaN NaN 0 NaN NaN 0 36981000 11239 4906 7112 7115 -0.03408191534890648 EEPDKLEEKTE 11 Unmodified _EEPDKLEEKTE_ 0 0 0 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 449.548912 1345.62491 -0.15195 -6.8309E-05 0.82621 0.00037142 0.67426 0.00030311 449.549310202016 18.504 0.55073 17.193 17.002 17.553 -1.3109 0.038579 -3.5669E-05 NaN 9.2438 58 15 6 NaN NaN NaN NaN 0 NaN NaN 0 50027000 11240 4906 7112 7115 -0.03408191534890648 EEPDKLEEKTE 11 Unmodified _EEPDKLEEKTE_ 0 0 0 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 449.548912 1345.62491 -0.42487 -0.000191 1.0749 0.00048321 0.65001 0.00029221 449.5494320776765 18.423 0.81038 17.151 16.964 17.774 -1.2722 -0.0033242 0.00029969 NaN 9.2438 63 22 6 NaN NaN NaN NaN 0 NaN NaN 0 48181000 11241 4906 7112 7115 -0.03408191534890648 EEPFLLTL 8 Unmodified _EEPFLLTL_ 0 0 0 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25347900390625 2 481.265676 960.516799 NaN NaN NaN NaN NaN NaN NaN 49.962 1 49.962 49.462 50.462 0 0 0 0 0.21486 1 9452 9452 9.3474 0 1 + 11242 15389 7113 7116 11519 11519 0.03496133463147544 EEPGSPLSPAP 11 Unmodified _EEPGSPLSPAP_ 0 0 0 ENSG00000170846|ENST00000635031|unknown;ENST00000307533.10_1_4:6675831-6676296:+|nuORF ENSG00000170846|ENST00000635031|unknown ENSG00000170846|ENST00000635031|unknown MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2778930664062 2 540.764029 1079.5135 0.038974 2.1075E-05 0.30418 0.00016449 0.34315 0.00018556 540.7641153021901 41.879 0.96406 39.24 38.775 39.739 -2.6396 57 27 3 0 0 0 0.66829 1 7740 7740 13.906 1.3745 1 4110100 11243 6102 7114 7117 11520 11520 -0.02307161381554579 EEPIPWARP 9 Unmodified _EEPIPWARP_ 0 0 0 ENST00000603544.5_2_14:35592492-35592597:+|nuORF ENST00000603544.5_2_14:35592492-35592597:+|nuORF ENST00000603544.5_2_14:35592492-35592597:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7836303710938 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 66.221 1 63.174 62.674 63.674 -3.047 0 0 0 0.19638 1 12828 12828 0.12781 0 1 11244 11724 7115 7118 11521 11521 0.012608588174998658 EEPKHGKMH 9 Unmodified _EEPKHGKMH_ 0 0 0 REV__ENST00000535379.1_1_11:114107968-114121274:+|nuORF REV__ENST00000535379.1_1_11:114107968-114121274:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7797241210938 2 546.766383 1091.51821 0.15592 8.525E-05 -1.5933 -0.00087115 -1.4374 -0.0007859 546.7653832048853 18.505 0.37943 17.194 16.902 17.282 -1.3109 15 10 3 0 0 0 0.67531 1 2999 2999 7.9102 0.62092 1 1508400 + 11245 15180 7116 7119 11522 11522 -0.023885557197218077 EEPKHGKMH 9 Unmodified _EEPKHGKMH_ 0 0 0 REV__ENST00000535379.1_1_11:114107968-114121274:+|nuORF REV__ENST00000535379.1_1_11:114107968-114121274:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.766383 1091.51821 0.15592 8.525E-05 -1.5933 -0.00087115 -1.4374 -0.0007859 546.7653832048853 18.505 0.37943 17.194 16.902 17.282 -1.3109 0.024765 -0.0002841 NaN 7.9102 15 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1508400 + 11246 15180 7116 7119 -0.023885557197218077 EEPKHGKMH 9 Unmodified _EEPKHGKMH_ 0 0 0 REV__ENST00000535379.1_1_11:114107968-114121274:+|nuORF REV__ENST00000535379.1_1_11:114107968-114121274:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.766383 1091.51821 -0.35301 -0.00019301 -1.0605 -0.00057986 -1.4135 -0.00077287 546.7657580681409 18.436 0.3799 17.144 16.911 17.291 -1.2918 -0.024765 0.0002985 NaN 7.9102 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 706120 + 11247 15180 7116 7119 -0.023885557197218077 EEPLELSTY 9 Unmodified _EEPLELSTY_ 0 0 0 REV__nc|ENSG00000214435|Q9HBK9-2|AS3MT REV__nc|ENSG00000214435|Q9HBK9-2|AS3MT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2623291015625 2 540.758412 1079.50227 0.4623 0.00024999 -1.2637 -0.00068335 -0.80138 -0.00043335 540.7573706049816 124.85 0.53281 120.08 119.63 120.16 -4.7681 23 14 3 0 0 0 0.60805 1 23949 23949 12.532 2.3482 1 2258600 + 11248 19669 7117 7120 11523 11523 -0.03429983475643894 EEPLGEEKL 9 Unmodified _EEPLGEEKL_ 0 0 0 REV__RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant REV__RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.277099609375 2 522.266404 1042.51826 0.57466 0.00030013 0.46746 0.00024414 1.0421 0.00054427 522.2666994336855 102.47 0.58334 98.447 98.15 98.733 -4.0212 30 16 2 0 0 0 0.17664 1 19671 19671 6.4869 0 1 1378700 + 11249 18846 7118 7121 11524 11524 -0.001302772387589357 EEPLSPRKL 9 Unmodified _EEPLSPRKL_ 0 0 0 REV__ENSG00000181790|ENST00000517894|ADGRB1 REV__ENSG00000181790|ENST00000517894|ADGRB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5535888671875 3 356.873113 1067.59751 -0.41267 -0.00014727 0.49178 0.0001755 0.07911 2.8232E-05 356.87322906926886 56.563 1.6918 53.668 52.999 54.69 -2.8944 120 48 3 0 0 0 0.5326 1 10980 10980 0.0033805 0 1 7729100 + 11250 18740 7119 7122 11525 11525 0.06641414506043475 EEPNGHAIEV 10 Unmodified _EEPNGHAIEV_ 0 0 0 REV__ENSG00000144668|ENST00000264741|ITGA9 REV__ENSG00000144668|ENST00000264741|ITGA9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7715454101562 2 547.759278 1093.504 0.34705 0.0001901 -0.079498 -4.3546E-05 0.26755 0.00014655 547.7592306619454 63.949 0.48113 60.692 60.468 60.949 -3.2567 25 13 3 0 0 0 0.42569 1 11991 11991 29.082 0.58707 1 1452500 + 11251 16794 7120 7123 11526 11526 -0.03900929667042874 EEPNGHAIEV 10 Unmodified _EEPNGHAIEV_ 0 0 0 REV__ENSG00000144668|ENST00000264741|ITGA9 REV__ENSG00000144668|ENST00000264741|ITGA9 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 547.759278 1093.504 0.34705 0.0001901 -0.079498 -4.3546E-05 0.26755 0.00014655 547.7592306619454 63.949 0.48113 60.692 60.468 60.949 -3.2567 -0.027006 0.00025614 NaN 29.082 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1452500 + 11252 16794 7120 7123 -0.03900929667042874 EEPNHSPNY 9 Unmodified _EEPNHSPNY_ 0 0 0 REV__nc|ENSG00000077782|P11362-21|FGFR1 REV__nc|ENSG00000077782|P11362-21|FGFR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.774169921875 2 543.727978 1085.4414 0.040395 2.1964E-05 2.722 0.00148 2.7624 0.001502 543.7297504906958 43.598 0.31784 40.851 40.659 40.977 -2.7475 13 8 2 0 0 0 0.62102 1 7892 7892 11.64 1.5664 1 515370 + 11253 14369 7121 7124 11527 11527 -0.09790075735236314 EEPNLLKS 8 Unmodified _EEPNLLKS_ 0 0 0 REV__ENSG00000080572|ENST00000372453|DNAAF6 REV__ENSG00000080572|ENST00000372453|DNAAF6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2498474121094 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 72.268 1 72.268 71.768 72.768 0 0 0 0 0.21452 1 14009 14009 13.508 0 1 + 11254 14412 7122 7125 11528 11528 0.019457747979686246 EEPPAPQY 8 Unmodified _EEPPAPQY_ 0 0 0 ENSG00000122122|ENST00000356892|SASH3 ENSG00000122122|ENST00000356892|SASH3 ENSG00000122122|ENST00000356892|SASH3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25396728515625 2 465.713808 929.413062 NaN NaN NaN NaN NaN NaN NaN 65.979 1 62.521 62.021 63.021 -3.4581 0 0 0 0.21039 1 12357 12357 16.942 0 1 11255 3209 7123 7126 11529 11529 -0.05446773644530367 EEPPFVPPPG 10 Unmodified _EEPPFVPPPG_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;CNTRL|p.N1300Tfs*22|1|0.32|ENSG00000119397|chr9:121150412-121150412|C/-|frameshift_variant;CNTRL|p.K1802Sfs*9|2|0.21|ENSG00000119397|chr9:121162247-121162247|A/-|frameshift_variant;ENST00000431571.5_1_9:123906333-123914781:+|nuORF;CNTRL|p.Q1233E|1|0.16|ENSG00000119397|chr9:121150217-121150217|C/G|missense_variant nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2640991210938 2 533.266207 1064.51786 NaN NaN NaN NaN NaN NaN NaN 53.488 1 50.604 50.104 51.104 -2.8837 0 0 0 0.22535 1 10188 10188 20.454 1.0146 1 11256 3073 7124 7127 11530 11530 -0.01181652167952052 EEPPKAPA 8 Unmodified _EEPPKAPA_ 0 0 0 REV__ENSG00000198832|ENST00000400299|SELENOM REV__ENSG00000198832|ENST00000400299|SELENOM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.7335205078125 2 419.718893 837.423233 -0.37626 -0.00015792 0.57442 0.0002411 0.19817 8.3174E-05 419.71911547548916 52.494 2.6971 49.399 48.3 50.997 -3.0954 289 77 5 0 0 0 8448 1 9617 9617 0.0082765 0 1 136620000 + 11257 19457 7125 7128 11531 11531 -0.0019816591928929483 EEPPKAPA 8 Unmodified _EEPPKAPA_ 0 0 0 REV__ENSG00000198832|ENST00000400299|SELENOM REV__ENSG00000198832|ENST00000400299|SELENOM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 419.718893 837.423233 -0.34993 -0.00014687 0.49945 0.00020963 0.14952 6.2756E-05 419.7190655529141 52.287 2.6656 49.405 48.348 51.014 -2.8824 0.0069584 5.469E-05 NaN 0.0082765 270 76 5 NaN NaN NaN NaN 0 NaN NaN 0 166370000 + 11258 19457 7125 7128 -0.0019816591928929483 EEPPKAPA 8 Unmodified _EEPPKAPA_ 0 0 0 REV__ENSG00000198832|ENST00000400299|SELENOM REV__ENSG00000198832|ENST00000400299|SELENOM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 419.718893 837.423233 0.02177 9.1372E-06 0.13359 5.6071E-05 0.15536 6.5208E-05 419.71892018759905 52.477 2.6966 49.39 48.326 51.022 -3.0876 -0.0079186 -0.00025242 NaN 0.0082765 272 76 5 NaN NaN NaN NaN 0 NaN NaN 0 150100000 + 11259 19457 7125 7128 -0.0019816591928929483 EEPPKAPA 8 Unmodified _EEPPKAPA_ 0 0 0 REV__ENSG00000198832|ENST00000400299|SELENOM REV__ENSG00000198832|ENST00000400299|SELENOM MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 419.718893 837.423233 -0.37626 -0.00015792 0.57442 0.0002411 0.19817 8.3174E-05 419.71911547548916 52.494 2.6971 49.399 48.3 50.997 -3.0954 0.00096023 0.00011763 NaN 0.0082765 289 77 5 NaN NaN NaN NaN 0 NaN NaN 0 136620000 + 11260 19457 7125 7128 -0.0019816591928929483 EEPPPGAGAR 10 Unmodified _EEPPPGAGAR_ 0 0 0 REV__ENST00000315930.10_3_X:137793281-137793449:-|nuORF REV__ENST00000315930.10_3_X:137793281-137793449:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25579833984375 2 490.743431 979.472308 NaN NaN NaN NaN NaN NaN NaN 23.531 1 21.742 21.242 22.242 -1.7886 0 0 0 0.22588 1 3788 3788 10.074 0.72649 1 + 11261 20520 7126 7129 11532 11532 -0.01824877630338051 EEPQIAKF 8 Unmodified _EEPQIAKF_ 0 0 0 REV__ENST00000472427.5_1_9:129677191-129778941:+|nuORF REV__ENST00000472427.5_1_9:129677191-129778941:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2441101074219 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 101.89 1 97.573 97.073 98.073 -4.3208 0 0 0 0.19492 1 19502 19502 26.341 0 1 + 11262 16351 7127 7130 11533 11533 0.009820786605587273 EEPQIAKF 8 Unmodified _EEPQIAKF_ 0 0 0 REV__ENST00000472427.5_1_9:129677191-129778941:+|nuORF REV__ENST00000472427.5_1_9:129677191-129778941:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25311279296875 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 86.395 1 82.666 82.166 83.166 -3.7289 0 0 0 0.2074 1 16520 16520 19.439 0 1 + 11263 16351 7127 7130 11534 11534 0.009820786605587273 EEPQQRPP 8 Unmodified _EEPQQRPP_ 0 0 0 nc|ENSG00000186660|Q96JP5-2|ZFP91;ENSG00000186660|ENST00000316059|ZFP91 nc|ENSG00000186660|Q96JP5-2|ZFP91 nc|ENSG00000186660|Q96JP5-2|ZFP91 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2642517089844 2 490.743431 979.472308 0.25543 0.00012535 1.4037 0.00068887 1.6592 0.00081422 490.74421623706513 37.182 0.20037 37.182 37.06 37.261 0 9 5 2 0 0 0 0.97173 1 6859 6859 12.532 0 1 309480 11264 7075 7128 7131 11535 11535 -0.01824877630338051 EEPRTPPSSGF 11 Unmodified _EEPRTPPSSGF_ 0 0 0 ENST00000519149.1_1_5:169714972-169724783:-|nuORF;ENST00000522823.5_1_5:169702797-169724783:-|nuORF;ENST00000519594.5_1_5:169697651-169724717:-|nuORF;ENST00000522760.5_1_5:169700986-169724717:-|nuORF ENST00000519149.1_1_5:169714972-169724783:-|nuORF ENST00000519149.1_1_5:169714972-169724783:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.283447265625 2 602.28566 1202.55677 NaN NaN NaN NaN NaN NaN NaN 110.1 1 105.73 105.23 106.23 -4.3776 0 0 0 0.22775 1 21699 21699 10.074 1.4806 1 11265 10815 7129 7132 11536 11536 -0.036409716042498985 EEPRTQKPP 9 Unmodified _EEPRTQKPP_ 0 0 0 ENSG00000106479|ENST00000223210|ZNF862;nc|ENSG00000106479|O60290-2|ZNF862 ENSG00000106479|ENST00000223210|ZNF862 ENSG00000106479|ENST00000223210|ZNF862 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2843017578125 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 53.936 1 50.801 50.301 51.301 -3.1352 0 0 0 0.23508 1 9937 9937 11.64 0 1 11266 2386 7130 7133 11537 11537 0.019316534665676954 EEPSMNSNY 9 Oxidation (M) _EEPSM(Oxidation (M))NSNY_ EEPSM(1)NSNY EEPSM(46)NSNY 0 0 1 REV__ENSG00000087269|ENST00000416614|NOP14 REV__ENSG00000087269|ENST00000416614|NOP14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.76953125 2 543.705854 1085.39715 0.26526 0.00014422 -0.49519 -0.00026924 -0.22993 -0.00012502 543.7078806290835 126.7 0.99392 121.91 121.6 122.59 -4.7959 121 27 6 0 0 0 0.13708 1 24321 24321 46.021 13.904 1 20016000 + 11267 14499 7131 7134 11538 11538 120 -0.14212847943713314 EEPSMNSNY 9 Oxidation (M) _EEPSM(Oxidation (M))NSNY_ EEPSM(1)NSNY EEPSM(44)NSNY 0 0 1 REV__ENSG00000087269|ENST00000416614|NOP14 REV__ENSG00000087269|ENST00000416614|NOP14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7824096679688 2 543.705854 1085.39715 0.26622 0.00014475 1.0489 0.00057028 1.3151 0.00071502 543.7078529375336 126.55 0.92784 121.85 121.5 122.43 -4.6998 89 25 4 0 0 0 0.15214 1 24346 24346 43.858 19.184 1 15953000 + 11268 14499 7131 7134 11539 11539 120 -0.14212847943713314 EEPTPVAGQGP 11 Unmodified _EEPTPVAGQGP_ 0 0 0 ENST00000549206.5_1_12:93964208-93964415:+|nuORF ENST00000549206.5_1_12:93964208-93964415:+|nuORF ENST00000549206.5_1_12:93964208-93964415:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2599487304688 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 36.761 1 34.413 33.913 34.913 -2.3479 0 0 0 0.22501 1 6504 6504 12.241 0 1 11269 11160 7132 7135 11540 11540 -0.028280455242793323 EEPTRTTK 8 Unmodified _EEPTRTTK_ 0 0 0 REV__ENSG00000131711|ENST00000296755|MAP1B REV__ENSG00000131711|ENST00000296755|MAP1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.249755859375 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 94.554 1 90.563 90.063 91.063 -3.9907 0 0 0 0.20294 1 18529 18529 23.148 5.0134 1 + 11270 16086 7133 7136 11541 11541 0.005799891668402779 EEPTRTTK 8 Unmodified _EEPTRTTK_ 0 0 0 REV__ENSG00000131711|ENST00000296755|MAP1B REV__ENSG00000131711|ENST00000296755|MAP1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2498779296875 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 94.839 1 90.958 90.458 91.458 -3.881 0 0 0 0.21486 1 18197 18197 12.532 1.4171 1 + 11271 16086 7133 7136 11542 11542 0.005799891668402779 EEPWAPHSL 9 Unmodified _EEPWAPHSL_ 0 0 0 REV__nc|ENSG00000196503|Q6T311|ARL9 REV__nc|ENSG00000196503|Q6T311|ARL9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2678833007812 2 533.253631 1064.49271 0.098168 5.2348E-05 -2.0399 -0.0010878 -1.9418 -0.0010354 533.2517003923432 126.66 0.18016 126.66 126.6 126.78 0 5 4 2 0 0 0 0.84208 1 25016 25016 7.2892 0 1 1279200 + 11272 24226 7134 7137 11543 11543 -0.036957069705295 EEPWILEK 8 Unmodified _EEPWILEK_ 0 0 0 ZNF248|p.G63del|1|0.23|ENSG00000198105|chr10:37837665-37837667|CTC/-|inframe_deletion;nc|ENSG00000198105|Q8NDW4-2|ZNF248;ZNF248|p.R196Kfs*5|1|0.13|ENSG00000198105|chr10:37832768-37832769|-/T|frameshift_variant;ENSG00000198105|ENST00000395867|ZNF248 ZNF248|p.G63del|1|0.23|ENSG00000198105|chr10:37837665-37837667|CTC/-|inframe_deletion ZNF248|p.G63del|1|0.23|ENSG00000198105|chr10:37837665-37837667|CTC/-|inframe_deletion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2739868164062 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 97.67 1 97.67 97.17 98.17 0 0 0 0 0.22647 1 19141 19141 2.643 2.3916 1 11273 7430 7135 7138 11544 11544 0.013946343490943036 EEQAKELREQL 11 Unmodified _EEQAKELREQL_ 0 0 0 REV__STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant REV__STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2403259277344 3 458.240412 1371.69941 NaN NaN NaN NaN NaN NaN NaN 48.215 1 48.215 47.715 48.715 0 0 0 0 0.22578 1 9100 9100 11.631 2.3876 1 + 11274 15172 7136 7139 11545 11545 0.028426160671415346 EEQALTKAA 9 Unmodified _EEQALTKAA_ 0 0 0 nc|ENSG00000171262|Q52LJ0-1|FAM98B;ENSG00000171262|ENST00000397609|FAM98B nc|ENSG00000171262|Q52LJ0-1|FAM98B nc|ENSG00000171262|Q52LJ0-1|FAM98B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.254638671875 2 480.753464 959.492375 0.93352 0.00044879 -1.0803 -0.00051936 -0.14677 -7.0562E-05 480.7529198268689 23.958 0.4159 22.405 22.117 22.533 -1.5532 19 11 3 0 0 0 0.025708 2 4160 4153;4160 86.332 23.759 1 1426500 11275 6133 7137 7140 11546;11547 11547 0.011008733096105061 EEQALTKAA 9 Unmodified _EEQALTKAA_ 0 0 0 nc|ENSG00000171262|Q52LJ0-1|FAM98B;ENSG00000171262|ENST00000397609|FAM98B nc|ENSG00000171262|Q52LJ0-1|FAM98B nc|ENSG00000171262|Q52LJ0-1|FAM98B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2544250488281 2 480.753464 959.492375 -0.00046528 -2.2369E-07 -0.086036 -4.1362E-05 -0.086502 -4.1586E-05 480.7533830765266 23.913 0.31087 22.379 22.159 22.47 -1.5342 14 8 2 0 0 0 0.12505 1 3858 3858 47.749 13.646 1 1533600 11276 6133 7137 7140 11548 11548 0.011008733096105061 EEQALTKAA 9 Unmodified _EEQALTKAA_ 0 0 0 nc|ENSG00000171262|Q52LJ0-1|FAM98B;ENSG00000171262|ENST00000397609|FAM98B nc|ENSG00000171262|Q52LJ0-1|FAM98B nc|ENSG00000171262|Q52LJ0-1|FAM98B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2542419433594 2 480.753464 959.492375 -0.36908 -0.00017743 0.18908 9.09E-05 -0.18 -8.6535E-05 480.7534306004635 24.121 0.31258 22.268 22.086 22.398 -1.8534 14 8 2 0 0 0 0.086396 1 3903 3903 60.074 25.971 1 707380 11277 6133 7137 7140 11549 11549 0.011008733096105061 EEQAMKLL 8 Unmodified _EEQAMKLL_ 0 0 0 REV__nc|ENSG00000167600|Q96SQ9-2|CYP2S1 REV__nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2542724609375 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 80.876 1 77.319 76.819 77.819 -3.557 0 0 0 0.20294 1 15791 15791 23.148 0 1 + 11278 17942 7138 7141 11550 11550 0.013190054429401243 EEQAPPPPP 9 Unmodified _EEQAPPPPP_ 0 0 0 REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23480224609375 2 481.234907 960.455261 -0.37991 -0.00018282 -2.0638 -0.00099315 -2.4437 -0.001176 481.2355663055402 36.603 0.38354 34.135 34.014 34.398 -2.4688 12 10 2 0 0 0 0.19311 1 6752 6752 37.974 10.345 1 311620 + 11279 19919 7139 7142 11551 11551 -0.02654798236142142 EEQAPPPPP 9 Unmodified _EEQAPPPPP_ 0 0 0 REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2548522949219 2 481.234907 960.455261 -0.37991 -0.00018282 -2.0638 -0.00099315 -2.4437 -0.001176 481.2355663055402 36.603 0.38354 34.135 34.014 34.398 -2.4688 12 10 2 0 0 0 0.54076 1 6766 6766 34.102 15.956 1 311620 + 11280 19919 7139 7142 11552 11552 -0.02654798236142142 EEQAPPPPP 9 Unmodified _EEQAPPPPP_ 0 0 0 REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2351989746094 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 36.489 1 34.141 33.641 34.641 -2.3479 0 0 0 0.12288 1 6452 6452 34.102 15.956 1 + 11281 19919 7139 7142 11553 11553 -0.02654798236142142 EEQDPGKPALP 11 Unmodified _EEQDPGKPALP_ 0 0 0 nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2528686523438 2 590.79586 1179.57717 0.49406 0.00029189 -0.47009 -0.00027773 0.023964 1.4158E-05 590.7956711720606 59.046 0.57108 55.781 55.439 56.01 -3.265 24 15 2 0 0 0 0.88538 1 10969 10969 14.405 2.1647 1 951330 11282 6527 7140 7143 11554 11554 -0.005438009444333147 EEQDQNRK 8 Unmodified _EEQDQNRK_ 0 0 0 ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5;TUBGCP5|p.D713Ifs*5|1|0.18|ENSG00000275835|chr15:23009953-23009953|T/-|frameshift_variant ENSG00000275835|ENST00000615383|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6866455078125 2 523.746702 1045.47885 NaN NaN NaN NaN NaN NaN NaN 39.834 1 37.285 36.785 37.785 -2.5491 0 0 0 0.21452 1 7409 7409 13.508 0.97634 1 11283 8026 7141 7144 11555 11555 -0.04206984469624331 EEQEKKYK 8 Unmodified _EEQEKKYK_ 0 0 0 REV__ENSG00000197980|ENST00000356539|LEKR1 REV__ENSG00000197980|ENST00000356539|LEKR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2798461914062 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 25.622 1 23.769 23.269 24.269 -1.8534 0 0 0 0.20896 1 4219 4219 18.135 1.9859 1 + 11284 19380 7142 7145 11556 11556 0.008088313724329055 EEQEVNKMTP 10 Unmodified _EEQEVNKMTP_ 0 0 0 ENST00000466097.1_1_22:38042800-38046733:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1 ENST00000466097.1_1_22:38042800-38046733:+|nuORF ENST00000466097.1_1_22:38042800-38046733:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.272705078125 2 602.779353 1203.54415 0.42255 0.0002547 0.1171 7.0583E-05 0.53964 0.00032528 602.7792431453628 36.043 1.0051 36.043 35.45 36.455 0 39 28 2 0 0 0 0.24816 1 6593 6593 51.415 41.341 1 2314700 11285 1928 7143 7146 11557 11557 -0.04947751058784888 EEQEVNKMTP 10 Unmodified _EEQEVNKMTP_ 0 0 0 ENST00000466097.1_1_22:38042800-38046733:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1 ENST00000466097.1_1_22:38042800-38046733:+|nuORF ENST00000466097.1_1_22:38042800-38046733:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2789306640625 2 602.779353 1203.54415 0.68104 0.00041052 -0.46724 -0.00028164 0.2138 0.00012888 602.7790797524075 38.508 1.215 35.959 35.391 36.606 -2.5491 56 34 2 0 0 0 0.45099 1 7226 7226 36.506 20.357 1 2758800 11286 1928 7143 7146 11558 11558 -0.04947751058784888 EEQEVNKMTP 10 Unmodified _EEQEVNKMTP_ 0 0 0 ENST00000466097.1_1_22:38042800-38046733:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1 ENST00000466097.1_1_22:38042800-38046733:+|nuORF ENST00000466097.1_1_22:38042800-38046733:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2973022460938 2 602.779353 1203.54415 0.39652 0.00023901 -0.13184 -7.9468E-05 0.26468 0.00015954 602.7793165158786 38.464 1.019 36.023 35.63 36.649 -2.4419 70 28 3 0 0 0 0.24816 1 6915 6915 51.415 41.871 1 3452400 11287 1928 7143 7146 11559 11559 -0.04947751058784888 EEQEVNKMTP 10 Unmodified _EEQEVNKMTP_ 0 0 0 ENST00000466097.1_1_22:38042800-38046733:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1 ENST00000466097.1_1_22:38042800-38046733:+|nuORF ENST00000466097.1_1_22:38042800-38046733:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.297607421875 2 602.779353 1203.54415 0.26312 0.0001586 0.21064 0.00012697 0.47376 0.00028558 602.7793842136498 38.385 1.0503 35.98 35.569 36.619 -2.4049 46 29 2 0 0 0 0.25101 1 6790 6790 83.278 59.257 1 1776300 11288 1928 7143 7146 11560 11560 -0.04947751058784888 EEQFASTPR 9 Unmodified _EEQFASTPR_ 0 0 0 ENST00000343544.8_1_2:88485199-88485639:+|nuORF ENST00000343544.8_1_2:88485199-88485639:+|nuORF ENST00000343544.8_1_2:88485199-88485639:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2787475585938 2 532.753995 1063.49344 0.066026 3.5176E-05 0.038045 2.0269E-05 0.10407 5.5444E-05 532.7540533739059 26.376 0.62286 24.454 24.086 24.709 -1.9222 53 17 4 0 0 0 0.09143 1 4393 4393 58.679 4.846 1 8118400 11289 8878 7144 7147 11561 11561 -0.03576912321477721 EEQFASTPR 9 Unmodified _EEQFASTPR_ 0 0 0 ENST00000343544.8_1_2:88485199-88485639:+|nuORF ENST00000343544.8_1_2:88485199-88485639:+|nuORF ENST00000343544.8_1_2:88485199-88485639:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.753995 1063.49344 0.13248 7.0579E-05 -0.050137 -2.6711E-05 0.082343 4.3868E-05 532.753940625197 24.609 0.5438 24.609 24.302 24.846 0 0.077589 -5.2548E-05 NaN 58.679 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 14757000 11290 8878 7144 7147 -0.03576912321477721 EEQFQKEE 8 Unmodified _EEQFQKEE_ 0 0 0 REV__LRRIQ1|p.K219Efs*16|1|0.17|ENSG00000133640|chr12:85047441-85047442|-/A|frameshift_variant REV__LRRIQ1|p.K219Efs*16|1|0.17|ENSG00000133640|chr12:85047441-85047442|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2845458984375 2 533.738011 1065.46147 0.44523 0.00023764 -0.73892 -0.00039439 -0.29369 -0.00015675 533.7375905903164 46.085 0.62312 46.085 45.83 46.453 0 26 17 2 0 0 0 0.9455 1 8716 8716 23.148 6.0355 1 884320 + 11291 16172 7145 7148 11562 11562 -0.06864324795287757 EEQGCDEGGY 10 Unmodified _EEQGCDEGGY_ 0 0 0 REV__TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant REV__TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.796142578125 2 543.687661 1085.36077 NaN NaN NaN NaN NaN NaN NaN 126.18 1 121.58 121.08 122.08 -4.5984 0 0 0 0.22588 1 24877 24877 4.3292 2.0265 1 + 11292 18029 7146 7149 11563 11563 -0.17849724840425552 EEQGWVPATY 10 Unmodified _EEQGWVPATY_ 0 0 0 SH3PXD2A|p.S529Afs*43|5|0.21|ENSG00000107957|chr10:103603634-103603634|G/-|frameshift_variant;nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A;SH3PXD2A|p.Q1067Vfs*5|1|0.08|ENSG00000107957|chr10:103602018-103602019|TG/-|frameshift_variant;nc|ENSG00000107957|Q5TCZ1-3|SH3PXD2A;SH3PXD2A|p.V1096Cfs*22|1|0.36|ENSG00000107957|chr10:103601932-103601932|C/-|frameshift_variant;ENSG00000107957|ENST00000369774|SH3PXD2A SH3PXD2A|p.S529Afs*43|5|0.21|ENSG00000107957|chr10:103603634-103603634|G/-|frameshift_variant SH3PXD2A|p.S529Afs*43|5|0.21|ENSG00000107957|chr10:103603634-103603634|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.269287109375 2 590.269478 1178.5244 NaN NaN NaN NaN NaN NaN NaN 61.406 1 58.166 57.666 58.666 -3.2395 0 0 0 0.22588 1 11494 11494 10.824 3.5347 1 11293 2452 7147 7150 11564 11564 -0.05771759007234323 EEQHIIYY 8 Unmodified _EEQHIIYY_ 0 0 0 REV__nc|ENSG00000148482|Q504Y0-2|SLC39A12 REV__nc|ENSG00000148482|Q504Y0-2|SLC39A12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7743530273438 2 547.761289 1093.50803 NaN NaN NaN NaN NaN NaN NaN 60.85 1 60.85 60.35 61.35 0 0 0 0 0.21486 1 11672 11672 10.183 1.5901 1 + 11294 16979 7148 7151 11565 11565 -0.03498840173347162 EEQHIIYY 8 Unmodified _EEQHIIYY_ 0 0 0 REV__nc|ENSG00000148482|Q504Y0-2|SLC39A12 REV__nc|ENSG00000148482|Q504Y0-2|SLC39A12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7676391601562 2 547.761289 1093.50803 NaN NaN NaN NaN NaN NaN NaN 50.817 1 47.772 47.272 48.272 -3.0453 0 0 0 0.21181 1 9319 9319 15.768 5.5848 1 + 11295 16979 7148 7151 11566 11566 -0.03498840173347162 EEQHSPDRF 9 Unmodified _EEQHSPDRF_ 0 0 0 REV__ENST00000436441.5_3_9:135139686-135139725:-|nuORF REV__ENST00000436441.5_3_9:135139686-135139725:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 573.3365478515625 2 572.754527 1143.4945 -0.047278 -2.7079E-05 0.26209 0.00015011 0.21481 0.00012303 572.7548955959725 95.13 0.80316 91.08 90.64 91.444 -4.0496 61 22 4 0 0 0 0.87258 1 18588 18588 7.9102 6.0659 1 9337600 + 11296 21670 7149 7152 11567 11567 -0.07150697952579321 EEQHSPDRF 9 Unmodified _EEQHSPDRF_ 0 0 0 REV__ENST00000436441.5_3_9:135139686-135139725:-|nuORF REV__ENST00000436441.5_3_9:135139686-135139725:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 572.754527 1143.4945 0.11018 6.3104E-05 0.46213 0.00026469 0.57231 0.00032779 572.7549852054138 91.035 0.81585 91.035 90.507 91.323 0 -0.010794 0.00013853 NaN 7.9102 52 22 3 NaN NaN NaN NaN 0 NaN NaN 0 7801900 + 11297 21670 7149 7152 -0.07150697952579321 EEQHSPDRF 9 Unmodified _EEQHSPDRF_ 0 0 0 REV__ENST00000436441.5_3_9:135139686-135139725:-|nuORF REV__ENST00000436441.5_3_9:135139686-135139725:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 572.754527 1143.4945 0.18963 0.00010861 0.53047 0.00030383 0.7201 0.00041244 572.7549100579131 95.242 0.79907 91.051 90.579 91.378 -4.1911 0.0058539 0.00021681 NaN 7.9102 58 22 3 NaN NaN NaN NaN 0 NaN NaN 0 8642000 + 11298 21670 7149 7152 -0.07150697952579321 EEQHSPDRF 9 Unmodified _EEQHSPDRF_ 0 0 0 REV__ENST00000436441.5_3_9:135139686-135139725:-|nuORF REV__ENST00000436441.5_3_9:135139686-135139725:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 572.754527 1143.4945 0.02188 1.2532E-05 0.1895 0.00010854 0.21138 0.00012107 572.7549349060038 94.897 0.72742 91.016 90.64 91.368 -3.881 -0.02959 -0.00017378 NaN 7.9102 54 20 4 NaN NaN NaN NaN 0 NaN NaN 0 7490000 + 11299 21670 7149 7152 -0.07150697952579321 EEQIAYAM 8 Unmodified _EEQIAYAM_ 0 0 0 ENST00000470396.1_1_1:151238797-151239150:+|nuORF;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4 ENST00000470396.1_1_1:151238797-151239150:+|nuORF ENST00000470396.1_1_1:151238797-151239150:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.738525390625 2 477.715493 953.416433 -0.13003 -6.2118E-05 0.52865 0.00025254 0.39862 0.00019043 477.7156770702606 86.197 0.80589 86.197 85.788 86.594 0 54 22 3 0 0 0 0.14223 1 16836 16836 54.774 27.89 1 12540000 11300 5204 7150 7153 11568 11568 -0.062138468621810716 EEQIAYAM 8 Unmodified _EEQIAYAM_ 0 0 0 ENST00000470396.1_1_1:151238797-151239150:+|nuORF;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4 ENST00000470396.1_1_1:151238797-151239150:+|nuORF ENST00000470396.1_1_1:151238797-151239150:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7239074707031 2 477.715493 953.416433 0.33619 0.0001606 -0.07908 -3.7778E-05 0.25711 0.00012283 477.7153898887278 90.458 0.87489 86.413 85.987 86.862 -4.0443 61 24 3 0 0 0 0.23433 1 17182 17182 42.095 18.946 1 14755000 11301 5204 7150 7153 11569 11569 -0.062138468621810716 EEQIAYAM 8 Unmodified _EEQIAYAM_ 0 0 0 ENST00000470396.1_1_1:151238797-151239150:+|nuORF;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4 ENST00000470396.1_1_1:151238797-151239150:+|nuORF ENST00000470396.1_1_1:151238797-151239150:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7256164550781 2 477.715493 953.416433 0.17908 8.5551E-05 -0.05676 -2.7115E-05 0.12232 5.8436E-05 477.71547683024437 90.194 0.83966 86.416 85.978 86.818 -3.7779 65 23 4 0 0 0 0.19607 1 17210 17210 46.021 22.873 1 13232000 11302 5204 7150 7153 11570 11570 -0.062138468621810716 EEQIAYAM 8 Unmodified _EEQIAYAM_ 0 0 0 ENST00000470396.1_1_1:151238797-151239150:+|nuORF;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4 ENST00000470396.1_1_1:151238797-151239150:+|nuORF ENST00000470396.1_1_1:151238797-151239150:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.715493 953.416433 -0.066353 -3.1698E-05 0.066165 3.1608E-05 -0.00018748 -8.9564E-08 477.7155616843965 90.24 0.88637 86.381 85.938 86.824 -3.8595 0.028768 -5.1049E-05 NaN 54.774 69 24 4 NaN NaN NaN NaN 0 NaN NaN 0 16714000 11303 5204 7150 7153 -0.062138468621810716 EEQIKNLTA 9 Unmodified _EEQIKNLTA_ 0 0 0 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6953735351562 2 523.279846 1044.54514 -0.31772 -0.00016626 0.0041287 2.1605E-06 -0.31359 -0.0001641 523.2797455919568 50.08 0.81037 47.199 46.798 47.609 -2.8811 62 22 4 0 0 0 0.0034036 1 9477 9477 136.39 60.631 1 13127000 11304 1579 7151 7154 11571 11571 0.02464831372435583 EEQIKNLTA 9 Unmodified _EEQIKNLTA_ 0 0 0 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.696533203125 2 523.279846 1044.54514 -0.55267 -0.0002892 0.29083 0.00015218 -0.26185 -0.00013702 523.279889351581 50.274 0.74345 47.229 46.822 47.565 -3.0453 59 21 4 0 0 0 0.026784 1 9219 9219 121.53 45.773 1 13106000 11305 1579 7151 7154 11572 11572 0.02464831372435583 EEQIKNLTA 9 Unmodified _EEQIKNLTA_ 0 0 0 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6958618164062 2 523.279846 1044.54514 -0.018463 -9.6614E-06 -0.09572 -5.0089E-05 -0.11418 -5.975E-05 523.2796890467471 50.229 0.74551 47.223 46.873 47.619 -3.0068 67 21 4 0 0 0 0.0044036 1 9218 9218 133.05 47.411 1 12322000 11306 1579 7151 7154 11573 11573 0.02464831372435583 EEQIKNLTA 9 Unmodified _EEQIKNLTA_ 0 0 0 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.279846 1044.54514 0.55039 0.00028801 -0.68137 -0.00035655 -0.13097 -6.8536E-05 523.2793893484101 47.283 0.74124 47.283 46.836 47.577 0 0.050015 -0.00064456 NaN 136.39 47 20 3 NaN NaN NaN NaN 0 NaN NaN 0 9099300 11307 1579 7151 7154 0.02464831372435583 EEQIPLFLV 9 Unmodified _EEQIPLFLV_ 0 0 0 ENSG00000165202|ENST00000297913|OR1Q1 ENSG00000165202|ENST00000297913|OR1Q1 ENSG00000165202|ENST00000297913|OR1Q1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7813720703125 2 544.305332 1086.59611 0.38728 0.0002108 -2.9835 -0.0016239 -2.5962 -0.0014131 544.8051755252561 32.384 0.4277 30.154 29.866 30.294 -2.2305 15 11 2 0 0 0 0.80521 1 5909 5909 15.847 2.8047 1 492820 11308 5609 7152 7155 11574 11574 0.05627780417262329 EEQIPLFLV 9 Unmodified _EEQIPLFLV_ 0 0 0 ENSG00000165202|ENST00000297913|OR1Q1 ENSG00000165202|ENST00000297913|OR1Q1 ENSG00000165202|ENST00000297913|OR1Q1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 544.305332 1086.59611 0.36359 0.0001979 -4.4745 -0.0024355 -4.1109 -0.0022376 544.8040591559028 30.314 0.21627 30.314 30.164 30.381 0 0.070115 -0.00077074 NaN 15.847 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 609870 11309 5609 7152 7155 0.05627780417262329 EEQIPLFLV 9 Unmodified _EEQIPLFLV_ 0 0 0 ENSG00000165202|ENST00000297913|OR1Q1 ENSG00000165202|ENST00000297913|OR1Q1 ENSG00000165202|ENST00000297913|OR1Q1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 544.305332 1086.59611 0.53923 0.00029351 -3.7958 -0.0020661 -3.2566 -0.0017726 544.303515867502 32.412 0.35019 30.263 29.999 30.35 -2.1483 0.019896 -3.1903E-05 NaN 15.847 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 553350 11310 5609 7152 7155 0.05627780417262329 EEQITAFEDY 10 Unmodified _EEQITAFEDY_ 0 0 0 ENST00000519625.1_1_5:67455048-67455117:-|nuORF;ENSG00000114942|ENST00000392222|EEF1B2 ENST00000519625.1_1_5:67455048-67455117:-|nuORF ENST00000519625.1_1_5:67455048-67455117:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.76953125 2 622.769508 1243.52446 NaN NaN NaN NaN NaN NaN NaN 71.732 1 68.104 67.604 68.604 -3.6275 0 0 0 0.22588 1 13535 13535 10.074 3.3508 1 11311 2817 7153 7156 11575 11575 -0.08755803797885164 EEQKEKFQ 8 Unmodified _EEQKEKFQ_ 0 0 0 REV__LAMB1|p.T1709Lfs*22|3|0.29|ENSG00000091136|chr7:107924329-107924329|T/-|frameshift_variant REV__LAMB1|p.T1709Lfs*22|3|0.29|ENSG00000091136|chr7:107924329-107924329|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2643432617188 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 57.902 1 54.65 54.15 55.15 -3.2517 0 0 0 0.21486 1 10753 10753 10.824 0 1 + 11312 14564 7154 7157 11576 11576 -0.015837416616705013 EEQKEQCYVR 10 Unmodified _EEQKEQCYVR_ 0 0 0 REV__nc|ENSG00000196440|Q5H9R4-3|ARMCX4 REV__nc|ENSG00000196440|Q5H9R4-3|ARMCX4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.8701171875 3 437.871443 1310.5925 NaN NaN NaN NaN NaN NaN NaN 11.234 1 10.14 9.6401 10.64 -1.0936 0 0 0 0.22588 1 1322 1322 0.13989 0.056541 1 + 11313 24224 7155 7158 11577 11577 -0.050372574188941144 EEQKIVVKV 9 Unmodified _EEQKIVVKV_ 0 0 0 ENSG00000109475|ENST00000394667|RPL34;ENST00000431295.1_1_1:153968319-153968433:+|nuORF;ENST00000407959.1_1_6:5788581-5788740:-|nuORF ENSG00000109475|ENST00000394667|RPL34 ENSG00000109475|ENST00000394667|RPL34 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5531921386719 3 357.88513 1070.63356 -0.29482 -0.00010551 0.52494 0.00018787 0.23012 8.2357E-05 357.8852631512792 59.874 0.87199 56.941 56.469 57.341 -2.9333 62 24 3 0 0 0 0.17798 1 11511 11511 37.075 20.8 1 9750700 11314 2530 7156 7159 11578 11578 0.10106871682910423 EEQKIVVKV 9 Unmodified _EEQKIVVKV_ 0 0 0 ENSG00000109475|ENST00000394667|RPL34;ENST00000431295.1_1_1:153968319-153968433:+|nuORF;ENST00000407959.1_1_6:5788581-5788740:-|nuORF ENSG00000109475|ENST00000394667|RPL34 ENSG00000109475|ENST00000394667|RPL34 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5522766113281 3 357.88513 1070.63356 0.090949 3.2549E-05 0.15648 5.6002E-05 0.24743 8.8552E-05 357.8851039548728 60.25 0.77795 56.936 56.48 57.258 -3.3139 51 21 3 0 0 0 0.47592 1 11240 11240 14.957 14.549 1 7471700 11315 2530 7156 7159 11579 11579 0.10106871682910423 EEQKKQKK 8 Unmodified _EEQKKQKK_ 0 0 0 ENST00000468692.1_1_1:111730229-111731929:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D ENST00000468692.1_1_1:111730229-111731929:-|nuORF ENST00000468692.1_1_1:111730229-111731929:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6780395507812 2 523.303655 1044.59276 0.40227 0.00021051 -0.60573 -0.00031698 -0.20346 -0.00010647 523.3033206988704 42.165 0.52108 42.165 41.935 42.456 0 20 14 2 0 0 0 1.0191 1 7920 7920 4.756 2.6963 1 1331300 11316 5369 7157 7160 11580 11580 0.07224530363282611 EEQKNLTV 8 Unmodified _EEQKNLTV_ 0 0 0 nc|ENSG00000069849|P54709-2|ATP1B3;ATP1B3|p.K221Nfs*26|1|0.39|ENSG00000069849|chr3:141922052-141922052|A/-|frameshift_variant;ENST00000465172.5_1_3:141595540-141640837:+|nuORF;ENSG00000069849|ENST00000286371|ATP1B3 nc|ENSG00000069849|P54709-2|ATP1B3 nc|ENSG00000069849|P54709-2|ATP1B3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25506591796875 2 480.753464 959.492375 -0.0048884 -2.3501E-06 -0.10095 -4.853E-05 -0.10583 -5.088E-05 480.7532877965181 22.589 0.28106 22.589 22.398 22.679 0 18 7 3 0 0 0 0.1027 1 3830 3830 62.573 2.4988 1 2581800 11317 265 7158 7161 11581 11581 0.011008733096105061 EEQKQKKY 8 Unmodified _EEQKQKKY_ 0 0 0 REV__ENSG00000158417|ENST00000289371|EIF5B REV__ENSG00000158417|ENST00000289371|EIF5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2805786132812 2 540.787838 1079.56112 0.1348 7.29E-05 0.012944 7.0002E-06 0.14775 7.9901E-05 540.7877163629188 47.801 0.7032 44.932 44.495 45.199 -2.869 43 19 3 0 0 0 0.56049 1 9005 9005 24.674 8.8267 1 3080800 + 11318 13799 7159 7162 11582 11582 0.024525376093379236 EEQKQKKY 8 Unmodified _EEQKQKKY_ 0 0 0 REV__ENSG00000158417|ENST00000289371|EIF5B REV__ENSG00000158417|ENST00000289371|EIF5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2799682617188 2 540.787838 1079.56112 -0.006499 -3.5146E-06 -0.29137 -0.00015757 -0.29787 -0.00016108 540.7876837008316 47.751 0.65402 44.801 44.502 45.156 -2.9499 35 18 3 0 0 0 0.66265 1 8735 8735 18.135 2.2878 1 2542900 + 11319 13799 7159 7162 11583 11583 0.024525376093379236 EEQKQKKY 8 Unmodified _EEQKQKKY_ 0 0 0 REV__ENSG00000158417|ENST00000289371|EIF5B REV__ENSG00000158417|ENST00000289371|EIF5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2789306640625 2 540.787838 1079.56112 -0.006499 -3.5146E-06 -0.29137 -0.00015757 -0.29787 -0.00016108 540.7876837008316 47.751 0.65402 44.801 44.502 45.156 -2.9499 35 18 3 0 0 0 0.95284 1 8679 8679 20.871 7.3633 1 2542900 + 11320 13799 7159 7162 11584 11584 0.024525376093379236 EEQKRAVDEKY 11 Unmodified _EEQKRAVDEKY_ 0 0 0 nc|ENSG00000284862|Q9UFE4|CCDC39 nc|ENSG00000284862|Q9UFE4|CCDC39 nc|ENSG00000284862|Q9UFE4|CCDC39 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2403869628906 3 465.568529 1393.68376 0.16626 7.7407E-05 -0.13338 -6.2097E-05 0.032885 1.531E-05 465.56847665277627 33.986 0.26897 31.839 31.707 31.976 -2.1468 13 7 2 0 0 0 0.96129 1 5963 5963 3.8459 2.5163 1 750140 11321 12648 7160 7163 11585 11585 0.00266329550095179 EEQKTPPS 8 Unmodified _EEQKTPPS_ 0 0 0 ENST00000371250.3_1_1:57002717-57044912:-|nuORF ENST00000371250.3_1_1:57002717-57044912:-|nuORF ENST00000371250.3_1_1:57002717-57044912:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22540283203125 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 33.477 1 31.159 30.659 31.659 -2.3175 0 0 0 0.20896 1 6122 6122 18.135 2.2878 1 11322 9156 7161 7164 11586 11586 -0.026113886158100286 EEQLAVKKY 9 Unmodified _EEQLAVKKY_ 0 0 0 REV__ZNF554|p.K406Sfs*18|1|0.22|ENSG00000172006|chr19:2834449-2834449|A/-|frameshift_variant REV__ZNF554|p.K406Sfs*18|1|0.22|ENSG00000172006|chr19:2834449-2834449|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 554.0477294921875 2 554.305864 1106.59717 0.01477 8.187E-06 3.7076 0.0020551 3.7224 0.0020633 554.3082245411391 68.909 0.42285 65.729 65.518 65.941 -3.1796 18 11 3 0 0 0 0.84208 1 13435 13435 7.2892 0 1 1887200 + 11323 18265 7162 7165 11587 11587 0.04813994786195508 EEQLECIAQD 10 Unmodified _EEQLECIAQD_ 0 0 0 REV__ENSG00000106948|ENST00000374088|AKNA REV__ENSG00000106948|ENST00000374088|AKNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2568359375 2 589.255711 1176.49687 0.030575 1.8017E-05 2.1915 0.0012914 2.2221 0.0013094 589.2578598024223 85.241 0.82196 81.53 81.015 81.837 -3.7117 48 23 3 0 0 0 0.61964 1 16185 16185 18.146 1.2041 1 3102100 + 11324 15070 7163 7166 11588 11588 -0.084320303298 EEQLEGRW 8 Unmodified _EEQLEGRW_ 0 0 0 REV__ENSG00000197136|ENST00000355703|PCNX3 REV__ENSG00000197136|ENST00000355703|PCNX3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6953735351562 2 523.748713 1045.48287 NaN NaN NaN NaN NaN NaN NaN 49.991 1 47.11 46.61 47.61 -2.8811 0 0 0 0.20294 1 9477 9477 23.148 6.2061 1 + 11325 19310 7164 7167 11589 11589 -0.038048949759058814 EEQLHKFN 8 Unmodified _EEQLHKFN_ 0 0 0 REV__ENSG00000147697|ENST00000276708|GSDMC REV__ENSG00000147697|ENST00000276708|GSDMC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6958618164062 2 522.759081 1043.50361 -0.01777 -9.2894E-06 0.15309 8.0028E-05 0.13532 7.0739E-05 522.7588364733276 50.296 0.71306 47.289 46.941 47.654 -3.0068 69 20 5 0 0 0 0.58432 1 9218 9218 23.148 0 1 5907000 + 11326 16949 7165 7168 11590 11590 -0.01640304596230635 EEQLIDIKV 9 Unmodified _EEQLIDIKV_ 0 0 0 PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19 PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7911987304688 2 543.805697 1085.59684 NaN NaN NaN NaN NaN NaN NaN 139.25 1 134.6 134.1 135.1 -4.6439 0 0 0 0.18489 1 27491 27491 37.075 16.204 1 11327 2565 7166 7169 11591 11591 0.05746575066336845 EEQLIDIKV 9 Unmodified _EEQLIDIKV_ 0 0 0 PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19 PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7911987304688 2 543.805697 1085.59684 NaN NaN NaN NaN NaN NaN NaN 139.26 1 134.62 134.12 135.12 -4.6439 0 0 0 0.10311 1 27493 27493 47.594 15.289 1 11328 2565 7166 7169 11592 11592 0.05746575066336845 EEQLIDIKV 9 Unmodified _EEQLIDIKV_ 0 0 0 PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19 PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78857421875 2 543.805697 1085.59684 0.095312 5.1831E-05 1.2886 0.00070073 1.3839 0.00075256 543.8062486616245 139.75 0.56087 134.8 134.46 135.02 -4.952 24 15 2 0 0 0 0.25976 2 26896 26875;26896 43.982 43.355 1 1961000 11329 2565 7166 7169 11593;11594 11594 0.05746575066336845 EEQLIDIKV 9 Unmodified _EEQLIDIKV_ 0 0 0 PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENSG00000110107|ENST00000227524|PRPF19 PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7811889648438 2 543.805697 1085.59684 0.34288 0.00018646 0.31377 0.00017063 0.65665 0.00035709 543.8059880517252 139.64 0.49071 134.79 134.49 134.98 -4.8492 21 13 2 0 0 0 0.44869 1 26929 26929 29.841 8.0939 1 1301000 11330 2565 7166 7169 11595 11595 0.05746575066336845 EEQLKVHGF 9 Unmodified _EEQLKVHGF_ 0 0 0 ENSG00000114784|ENST00000232905|EIF1B ENSG00000114784|ENST00000232905|EIF1B ENSG00000114784|ENST00000232905|EIF1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7840576171875 2 543.782556 1085.55056 0.74768 0.00040658 1.6238 0.00088299 2.3715 0.0012896 543.7835739386302 102.22 1.5705 102.22 101.33 102.9 0 122 44 4 0 0 0 0.60805 1 20208 20208 12.532 0.29089 1 22701000 11331 2810 7167 7170 11596 11596 0.01120554954900399 EEQLQKTTA 9 Unmodified _EEQLQKTTA_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6797485351562 2 524.269478 1046.5244 -0.16532 -8.6675E-05 -0.16923 -8.8721E-05 -0.33455 -0.0001754 524.2693650250077 60.477 0.79243 57.544 57.204 57.996 -2.9333 48 22 3 0 0 0 0.35202 1 11633 11633 45.7 21.91 1 15631000 + 11332 15894 7168 7171 11597 11597 0.0030024099276033667 EEQLQKTTA 9 Unmodified _EEQLQKTTA_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6971435546875 2 524.269478 1046.5244 -0.45937 -0.00024083 0.19519 0.00010233 -0.26418 -0.0001385 524.2696066296504 50.007 0.47392 47.008 46.763 47.237 -2.999 21 13 2 0 0 0 0.58699 1 9172 9172 32.305 9.5692 1 1691500 + 11333 15894 7168 7171 11598 11598 0.0030024099276033667 EEQLQKTTA 9 Unmodified _EEQLQKTTA_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6895141601562 2 524.269478 1046.5244 -0.39166 -0.00020533 -0.017789 -9.3261E-06 -0.40945 -0.00021466 524.2694704362265 60.885 0.72858 57.516 57.203 57.931 -3.3694 54 20 4 0 0 0 0.40905 1 11403 11403 41.84 11.203 1 12572000 + 11334 15894 7168 7171 11599 11599 0.0030024099276033667 EEQLQKTTA 9 Unmodified _EEQLQKTTA_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 524.269478 1046.5244 -0.070983 -3.7214E-05 -0.34231 -0.00017946 -0.41329 -0.00021668 524.2693009539453 57.566 0.68786 57.566 57.272 57.96 0 0.028221 -5.8284E-05 NaN 66.457 47 19 3 NaN NaN NaN NaN 0 NaN NaN 0 15427000 + 11335 15894 7168 7171 0.0030024099276033667 EEQLQQIRAE 10 Unmodified _EEQLQQIRAE_ 0 0 0 CON__P13645;ENSG00000186395|ENST00000269576|KRT10;CON__P02535-1 CON__P13645 CON__P13645 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.777587890625 2 622.317491 1242.62043 0.78835 0.0004906 -0.51605 -0.00032115 0.2723 0.00016946 622.3171977476198 52.082 0.51701 49.199 48.934 49.451 -2.8824 22 14 2 0 0 0 0.015619 4 9878 9863;9878;9941;9944 100.71 42.987 1 1578300 + 11336 664 7169 7172 11600;11601;11602;11603 11601 0.0088238883286067 EEQLQQLR 8 Unmodified _EEQLQQLR_ 0 0 0 REV__ENSG00000023892|ENST00000316637|DEF6 REV__ENSG00000023892|ENST00000316637|DEF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2777099609375 2 522.277638 1042.54072 -0.4812 -0.00025132 0.5731 0.00029932 0.091899 4.7997E-05 522.2779407606021 39.834 0.662 37.285 36.93 37.592 -2.5491 52 18 4 0 0 0 0.042326 2 7429 7374;7429 88.904 0 1 6620500 + 11337 13995 7170 7173 11604;11605 11605 0.021153669495106442 EEQLQQLR 8 Unmodified _EEQLQQLR_ 0 0 0 REV__ENSG00000023892|ENST00000316637|DEF6 REV__ENSG00000023892|ENST00000316637|DEF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2777099609375 2 522.277638 1042.54072 0.17854 9.3247E-05 -0.14672 -7.6627E-05 0.031822 1.662E-05 522.2775960798298 39.71 0.52758 37.305 37.031 37.558 -2.4049 36 14 4 0 0 0 0.10891 1 7104 7104 61.357 0 1 2350800 + 11338 13995 7170 7173 11606 11606 0.021153669495106442 EEQLQQLR 8 Unmodified _EEQLQQLR_ 0 0 0 REV__ENSG00000023892|ENST00000316637|DEF6 REV__ENSG00000023892|ENST00000316637|DEF6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.277638 1042.54072 -0.4812 -0.00025132 0.5731 0.00029932 0.091899 4.7997E-05 522.2779407606021 39.834 0.662 37.285 36.93 37.592 -2.5491 0.0052914 0.00036423 NaN 88.904 52 18 4 NaN NaN NaN NaN 0 NaN NaN 0 6620500 + 11339 13995 7170 7173 0.021153669495106442 EEQLQQLR 8 Unmodified _EEQLQQLR_ 0 0 0 REV__ENSG00000023892|ENST00000316637|DEF6 REV__ENSG00000023892|ENST00000316637|DEF6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.277638 1042.54072 -0.70226 -0.00036677 0.78915 0.00041215 0.086889 4.538E-05 522.2780332020201 39.789 0.49656 37.249 36.967 37.463 -2.5398 -0.030812 0.00058991 NaN 88.904 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 702740 + 11340 13995 7170 7173 0.021153669495106442 EEQLRQKR 8 Unmodified _EEQLRQKR_ 0 0 0 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7958374023438 2 543.804354 1085.59415 0.34288 0.00018646 2.7828 0.0015133 3.1257 0.0016998 543.8059880517252 139.64 0.49071 134.79 134.49 134.98 -4.8492 21 13 2 0 0 0 0.17453 1 26913 26913 48.346 2.3249 1 1301000 + 11341 18776 7171 7174 11607 11607 0.054781644520289774 EEQMAEFY 8 Unmodified _EEQMAEFY_ 0 0 0 nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;LRRFIP2|p.I487Lfs*4|1|0.41|ENSG00000093167|chr3:37072795-37072795|T/-|frameshift_variant;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;LRRFIP2|p.V671Sfs*2|1|0.12|ENSG00000093167|chr3:37054455-37054456|-/T|frameshift_variant;ENSG00000093167|ENST00000336686|LRRFIP2 nc|ENSG00000093167|Q9Y608-2|LRRFIP2 nc|ENSG00000093167|Q9Y608-2|LRRFIP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6781616210938 2 523.710408 1045.40626 NaN NaN NaN NaN NaN NaN NaN 22.681 1 21.128 20.628 21.628 -1.5532 0 0 0 0.20568 1 3885 3885 20.871 10.047 1 11342 1845 7172 7175 11608 11608 -0.11462454587399407 EEQMFVNRV 9 Unmodified _EEQMFVNRV_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN;ENST00000505615.1_1_5:82849283-82876028:+|nuORF;nc|ENSG00000038427|P13611-4|VCAN nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33642578125 2 576.279323 1150.54409 NaN NaN NaN NaN NaN NaN NaN 87.979 1 83.984 83.484 84.484 -3.9953 0 0 0 0.21469 1 16755 16755 19.257 5.7491 1 11343 1183 7173 7176 11609 11609 -0.0251570626812736 EEQMNTMKA 9 Unmodified _EEQMNTMKA_ 0 0 0 KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant;nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1 KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2581176757812 2 541.236267 1080.45798 0.93087 0.00050382 -0.76163 -0.00041222 0.16924 9.1601E-05 541.2357102788923 28.764 0.30859 26.808 26.672 26.981 -1.9561 14 8 2 0 0 0 0.10047 1 5154 5154 71.922 25.901 1 644890 11344 3445 7174 7177 11610 11610 -0.07903034165133249 EEQNLPAR 8 Unmodified _EEQNLPAR_ 0 0 0 REV__ENSG00000205108|ENST00000378788|FAM205A REV__ENSG00000205108|ENST00000378788|FAM205A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7425537109375 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 32.732 1 30.501 30.001 31.001 -2.2305 0 0 0 0.2074 1 5973 5973 19.439 0 1 + 11345 19580 7175 7178 11611 11611 -0.007208776303286868 EEQNPDMA 8 Unmodified _EEQNPDMA_ 0 0 0 REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|43|2|sense REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|43|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 312.1268615722656 3 311.79213 932.354561 -0.014565 -4.5412E-06 0.80613 0.00025134 0.79156 0.0002468 311.7923381435017 45.734 0.68636 42.868 42.52 43.206 -2.8653 32 19 2 0 0 0 8448 1 8335 8335 10.074 1.9184 1 1470600 + 11346 23779 7176 7179 11612 11612 -0.11432198281306682 EEQPAHPLQVG 11 Unmodified _EEQPAHPLQVG_ 0 0 0 ENSG00000113621|ENST00000358387|TXNDC15 ENSG00000113621|ENST00000358387|TXNDC15 ENSG00000113621|ENST00000358387|TXNDC15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2804565429688 2 602.801477 1203.5884 0.66133 0.00039865 -0.82331 -0.00049629 -0.16198 -9.7639E-05 602.8010369685544 48.907 0.28223 48.907 48.736 49.019 0 11 7 2 0 0 0 0.89764 1 9242 9242 17.113 3.2068 1 918540 11347 2754 7177 7180 11613 11613 -0.005249788503078889 EEQPAHPLQVG 11 Unmodified _EEQPAHPLQVG_ 0 0 0 ENSG00000113621|ENST00000358387|TXNDC15 ENSG00000113621|ENST00000358387|TXNDC15 ENSG00000113621|ENST00000358387|TXNDC15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2786865234375 2 602.801477 1203.5884 0.8321 0.00050159 -0.6034 -0.00036373 0.2287 0.00013786 602.8010279365848 51.766 0.50694 48.883 48.663 49.17 -2.8824 19 14 2 0 0 0 0.44344 1 9845 9845 41.956 23.809 1 1331200 11348 2754 7177 7180 11614 11614 -0.005249788503078889 EEQPQVEL 8 Unmodified _EEQPQVEL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 486.23968505859375 2 486.237647 970.460741 NaN NaN NaN NaN NaN NaN NaN 124.55 1 124.55 124.05 125.05 0 0 0 0 0.22628 1 24563 24563 1.4551 0 1 11349 7703 7178 7181 11615 11615 -0.025671194443361856 EEQPVASTP 9 Unmodified _EEQPVASTP_ 0 0 0 ENST00000436507.2_1_9:37885847-37886384:+|nuORF;nc|ENSG00000213593|Q9Y320-2|TMX2;ENSG00000213593|ENST00000278422|TMX2 ENST00000436507.2_1_9:37885847-37886384:+|nuORF ENST00000436507.2_1_9:37885847-37886384:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7425537109375 2 479.229822 956.445091 0.12961 6.2111E-05 -3.3875 -0.0016234 -3.2579 -0.0015613 479.2272715411888 32.689 1.2306 30.458 29.866 31.096 -2.2305 42 34 2 0 0 0 0.42289 1 5973 5973 25.399 0 1 910880 11350 7699 7179 7182 11616 11616 -0.03487405961368495 EEQQIAKLQ 9 Unmodified _EEQQIAKLQ_ 0 0 0 REV__GCC2|p.H248Q|1|0.2|ENSG00000135968|chr2:108470073-108470073|C/G|missense_variant REV__GCC2|p.H248Q|1|0.2|ENSG00000135968|chr2:108470073-108470073|C/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7942504882812 2 543.793121 1085.57169 0.24053 0.0001308 0.46485 0.00025278 0.70538 0.00038358 543.7931465606404 15.712 0.51782 15.712 15.438 15.955 0 17 14 2 0 0 0 0.57447 1 2371 2371 14.838 1.7958 1 331040 + 11351 23565 7180 7183 11617 11617 0.032325202637593975 EEQQQRAREQA 11 Unmodified _EEQQQRAREQA_ 0 0 0 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2243957519531 3 458.223644 1371.6491 NaN NaN NaN NaN NaN NaN NaN 46.291 1 43.424 42.924 43.924 -2.8666 0 0 0 0.22632 1 8423 8423 0.58532 0.41332 1 + 11352 18776 7181 7184 11618 11618 -0.021854935379678864 EEQQQRHWVA 10 Unmodified _EEQQQRHWVA_ 0 0 0 IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant;ENSG00000170604|ENST00000302165|IRF2BP1 IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2262878417969 3 437.546059 1309.61635 0.1975 8.6416E-05 -0.039504 -1.7285E-05 0.158 6.9131E-05 437.5460047003531 30.113 0.56638 30.113 29.814 30.381 0 45 15 4 0 0 0 0.84113 1 5395 5395 12.175 12.175 1 8693700 11353 6083 7182 7185 11619 11619 -0.026076558702015973 EEQQQRHWVA 10 Unmodified _EEQQQRHWVA_ 0 0 0 IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant;ENSG00000170604|ENST00000302165|IRF2BP1 IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2266845703125 3 437.546059 1309.61635 0.047486 2.0777E-05 0.094151 4.1195E-05 0.14164 6.1973E-05 437.5460508706505 32.303 0.57064 30.073 29.76 30.331 -2.2305 57 15 5 0 0 0 0.50416 1 5886 5886 37.771 26.706 1 10359000 11354 6083 7182 7185 11620 11620 -0.026076558702015973 EEQQQRHWVA 10 Unmodified _EEQQQRHWVA_ 0 0 0 IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant;ENSG00000170604|ENST00000302165|IRF2BP1 IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 437.546059 1309.61635 0.23016 0.00010071 -0.19014 -8.3196E-05 0.040018 1.751E-05 437.5459632271458 32.108 0.66221 30.082 29.73 30.392 -2.0264 0.0030241 -0.00013992 NaN 37.771 58 18 4 NaN NaN NaN NaN 0 NaN NaN 0 9251200 11355 6083 7182 7185 -0.026076558702015973 EEQQRLLEA 9 Unmodified _EEQQRLLEA_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;EIF2AK4|p.L856Wfs*7|1|0.47|ENSG00000128829|chr15:39990307-39990307|T/-|frameshift_variant;EIF2AK4|p.P1003Hfs*17|1|0.32|ENSG00000128829|chr15:40001069-40001069|C/-|frameshift_variant;EIF2AK4|p.R192Gfs*43|1|0.34|ENSG00000128829|chr15:39953958-39953958|A/-|frameshift_variant;EIF2AK4|p.M321Wfs*31|1|0.14|ENSG00000128829|chr15:39965781-39965781|A/-|frameshift_variant;EIF2AK4|p.E436Kfs*67|1|0.08|ENSG00000128829|chr15:39967632-39967632|G/-|frameshift_variant;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 558.1260375976562 2 558.288202 1114.56185 0.015824 8.8346E-06 -0.29251 -0.0001633 -0.27668 -0.00015447 558.2879295687583 54.776 1.0038 51.639 51.448 52.452 -3.1377 34 28 2 0 0 0 0.55979 1 10295 10295 15.847 2.8047 1 4787100 11356 3543 7183 7186 11621 11621 0.00915332258387025 EEQQRLLEA 9 Unmodified _EEQQRLLEA_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;EIF2AK4|p.L856Wfs*7|1|0.47|ENSG00000128829|chr15:39990307-39990307|T/-|frameshift_variant;EIF2AK4|p.P1003Hfs*17|1|0.32|ENSG00000128829|chr15:40001069-40001069|C/-|frameshift_variant;EIF2AK4|p.R192Gfs*43|1|0.34|ENSG00000128829|chr15:39953958-39953958|A/-|frameshift_variant;EIF2AK4|p.M321Wfs*31|1|0.14|ENSG00000128829|chr15:39965781-39965781|A/-|frameshift_variant;EIF2AK4|p.E436Kfs*67|1|0.08|ENSG00000128829|chr15:39967632-39967632|G/-|frameshift_variant;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 558.288202 1114.56185 0.37057 0.00020689 -0.67472 -0.00037669 -0.30415 -0.0001698 558.2879009497414 52.112 1.1068 52.112 51.825 52.931 0 0.29152 -0.00035443 NaN 15.847 41 30 2 NaN NaN NaN NaN 0 NaN NaN 0 4692000 11357 3543 7183 7186 0.00915332258387025 EEQQRLLEA 9 Unmodified _EEQQRLLEA_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;EIF2AK4|p.L856Wfs*7|1|0.47|ENSG00000128829|chr15:39990307-39990307|T/-|frameshift_variant;EIF2AK4|p.P1003Hfs*17|1|0.32|ENSG00000128829|chr15:40001069-40001069|C/-|frameshift_variant;EIF2AK4|p.R192Gfs*43|1|0.34|ENSG00000128829|chr15:39953958-39953958|A/-|frameshift_variant;EIF2AK4|p.M321Wfs*31|1|0.14|ENSG00000128829|chr15:39965781-39965781|A/-|frameshift_variant;EIF2AK4|p.E436Kfs*67|1|0.08|ENSG00000128829|chr15:39967632-39967632|G/-|frameshift_variant;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 558.288202 1114.56185 -0.21084 -0.00011771 0.0099496 5.5547E-06 -0.20089 -0.00011216 558.2882014557259 54.637 0.50994 51.753 51.497 52.007 -2.8837 -0.067752 0.00041005 NaN 15.847 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 7098800 11358 3543 7183 7186 0.00915332258387025 EEQQRLLEA 9 Unmodified _EEQQRLLEA_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;EIF2AK4|p.L856Wfs*7|1|0.47|ENSG00000128829|chr15:39990307-39990307|T/-|frameshift_variant;EIF2AK4|p.P1003Hfs*17|1|0.32|ENSG00000128829|chr15:40001069-40001069|C/-|frameshift_variant;EIF2AK4|p.R192Gfs*43|1|0.34|ENSG00000128829|chr15:39953958-39953958|A/-|frameshift_variant;EIF2AK4|p.M321Wfs*31|1|0.14|ENSG00000128829|chr15:39965781-39965781|A/-|frameshift_variant;EIF2AK4|p.E436Kfs*67|1|0.08|ENSG00000128829|chr15:39967632-39967632|G/-|frameshift_variant;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 558.288202 1114.56185 0.058341 3.2571E-05 -0.46552 -0.00025989 -0.40718 -0.00022732 558.2877958994749 54.915 0.94254 51.779 51.535 52.478 -3.1352 -0.041583 -0.00012085 NaN 15.847 32 26 2 NaN NaN NaN NaN 0 NaN NaN 0 5171100 11359 3543 7183 7186 0.00915332258387025 EEQQTAFVKWL 11 Unmodified _EEQQTAFVKWL_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant;REV__nc|ENSG00000157423|Q4G0P3-8|HYDIN REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23858642578125 3 460.238232 1377.69287 NaN NaN NaN NaN NaN NaN NaN 64.699 1 64.699 64.199 65.199 0 0 0 0 0.22632 1 12460 12460 0.172 0 1 + 11360 23644;24109 7184 7187 11622 11622 0.019127229064451967 EEQRNEFE 8 Unmodified _EEQRNEFE_ 0 0 0 ENSG00000165623|ENST00000378681|UCMA ENSG00000165623|ENST00000378681|UCMA ENSG00000165623|ENST00000378681|UCMA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2830810546875 2 540.73326 1079.45197 0.43779 0.00023673 -0.33964 -0.00018366 0.098149 5.3073E-05 540.7325209765803 121.47 0.17976 116.93 116.82 117 -4.5476 6 4 2 0 0 0 0.97173 1 23945 23945 7.9102 0 1 867290 11361 5642 7185 7188 11623 11623 -0.0845809308079879 EEQRRAFQ 8 Unmodified _EEQRRAFQ_ 0 0 0 ENSG00000184698|ENST00000642046|OR51M1 ENSG00000184698|ENST00000642046|OR51M1 ENSG00000184698|ENST00000642046|OR51M1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.269775390625 2 532.267604 1062.52066 -0.10517 -5.5977E-05 -0.080981 -4.3104E-05 -0.18615 -9.9081E-05 532.2676256018043 17.804 1.1087 16.493 16.136 17.245 -1.3109 76 24 5 0 0 0 0.70613 1 2816 2816 13.508 0.97634 1 93142000 11362 6929 7186 7189 11624 11624 -0.008103839904379129 EEQRRAFQ 8 Unmodified _EEQRRAFQ_ 0 0 0 ENSG00000184698|ENST00000642046|OR51M1 ENSG00000184698|ENST00000642046|OR51M1 ENSG00000184698|ENST00000642046|OR51M1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2698974609375 2 532.267604 1062.52066 -0.052794 -2.81E-05 -0.11327 -6.0293E-05 -0.16607 -8.8393E-05 532.2676363223611 17.742 1.0959 16.47 16.144 17.24 -1.2722 78 30 5 0 0 0 0.70613 1 2597 2597 13.508 1.8676 1 104620000 11363 6929 7186 7189 11625 11625 -0.008103839904379129 EEQRRAVIV 9 Unmodified _EEQRRAVIV_ 0 0 0 ENST00000575672.1_1_16:4308058-4308328:-|nuORF;ENST00000575320.1_1_16:4308058-4310315:-|nuORF;ENSG00000090447|ENST00000204517|TFAP4 ENST00000575672.1_1_16:4308058-4308328:-|nuORF ENST00000575672.1_1_16:4308058-4308328:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.52001953125 3 367.212128 1098.61456 0.1086 3.988E-05 -0.29371 -0.00010785 -0.1851 -6.7973E-05 367.21207894242434 36.948 0.7164 34.6 34.14 34.856 -2.3479 41 20 3 0 0 0 0.1428 1 6538 6538 37.075 19.962 1 1437600 11364 1785 7187 7190 11626 11626 0.06919335111842884 EEQRRAVIV 9 Unmodified _EEQRRAVIV_ 0 0 0 ENST00000575672.1_1_16:4308058-4308328:-|nuORF;ENST00000575320.1_1_16:4308058-4310315:-|nuORF;ENSG00000090447|ENST00000204517|TFAP4 ENST00000575672.1_1_16:4308058-4308328:-|nuORF ENST00000575672.1_1_16:4308058-4308328:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.53509521484375 3 367.212128 1098.61456 -0.4361 -0.00016014 0.39246 0.00014412 -0.043644 -1.6026E-05 367.21226023337766 36.986 0.74214 34.649 34.169 34.911 -2.3375 37 20 3 0 0 0 0.38759 1 6514 6514 22.736 14.581 1 1387600 11365 1785 7187 7190 11627 11627 0.06919335111842884 EEQRRPARGAV 11 Unmodified _EEQRRPARGAV_ 0 0 0 REV__nc|ENSG00000108406|Q8IX18-4|DHX40 REV__nc|ENSG00000108406|Q8IX18-4|DHX40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 423.8842468261719 3 423.565453 1267.67453 -1.5342 -0.00064982 -1.0084 -0.00042713 -2.5426 -0.0010769 423.5649968018919 17.379 2.4797 15.864 15.379 17.859 -1.5148 105 70 2 0 0 0 0.65515 1 2538 2538 3.0723 0 1 643200 + 11366 15121 7188 7191 11628 11628 0.05140025775062895 EEQRRVQV 8 Unmodified _EEQRRVQV_ 0 0 0 CUL1|p.Y377Ifs*12|1|0.28|ENSG00000055130|chr7:148783821-148783822|-/A|frameshift_variant;CUL1|p.L446Ifs*3|1|0.4|ENSG00000055130|chr7:148786586-148786589|CACT/-|frameshift_variant;ENSG00000055130|ENST00000325222|CUL1 CUL1|p.Y377Ifs*12|1|0.28|ENSG00000055130|chr7:148783821-148783822|-/A|frameshift_variant CUL1|p.Y377Ifs*12|1|0.28|ENSG00000055130|chr7:148783821-148783822|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.26708984375 2 522.283254 1042.55196 -1.1043 -0.00057678 1.454 0.00075942 0.34969 0.00018264 522.2836877577727 18.45 0.34965 16.935 16.814 17.164 -1.5148 14 8 2 0 0 0 8448 1 2736 2736 6.2058 0 1 273520 11367 756 7189 7192 11629 11629 0.032381890436681715 EEQRVHSPP 9 Unmodified _EEQRVHSPP_ 0 0 0 ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF;nc|ENSG00000197771|Q9BTE3-3|MCMBP ENSG00000197771|ENST00000369077|MCMBP ENSG00000197771|ENST00000369077|MCMBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2581787109375 2 539.767437 1077.52032 0.16886 9.1147E-05 -0.022247 -1.2008E-05 0.14662 7.9139E-05 539.7674176852238 15.182 1.3917 15.182 14.807 16.199 0 147 39 5 0 0 0 0.5354 1 2325 2325 24.021 9.1823 1 22003000 11368 7398 7190 7193 11630 11630 -0.015338037102765156 EEQRVHSPP 9 Unmodified _EEQRVHSPP_ 0 0 0 ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF;nc|ENSG00000197771|Q9BTE3-3|MCMBP ENSG00000197771|ENST00000369077|MCMBP ENSG00000197771|ENST00000369077|MCMBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2041015625 3 360.180717 1077.52032 -0.34148 -0.000123 0.21287 7.6671E-05 -0.12862 -4.6325E-05 360.1807826873662 15.168 1.3917 15.168 14.807 16.199 0 150 39 5 0 0 0 0.68547 1 2357 2357 30.703 12.84 1 21582000 11369 7398 7190 7193 11631 11631 -0.015338037102765156 EEQRVHSPP 9 Unmodified _EEQRVHSPP_ 0 0 0 ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF;nc|ENSG00000197771|Q9BTE3-3|MCMBP ENSG00000197771|ENST00000369077|MCMBP ENSG00000197771|ENST00000369077|MCMBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2708740234375 2 539.767437 1077.52032 -0.22446 -0.00012115 0.32366 0.0001747 0.099205 5.3547E-05 539.7675850315 16.244 1.3973 15.028 14.619 16.016 -1.2159 134 39 4 0 0 0 0.5354 2 2583 2546;2583 18.146 5.6148 1 13018000 11370 7398 7190 7193 11632;11633 11633 -0.015338037102765156 EEQRVHSPP 9 Unmodified _EEQRVHSPP_ 0 0 0 ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF;nc|ENSG00000197771|Q9BTE3-3|MCMBP ENSG00000197771|ENST00000369077|MCMBP ENSG00000197771|ENST00000369077|MCMBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20452880859375 3 360.180717 1077.52032 -0.67314 -0.00024245 0.51319 0.00018484 -0.15995 -5.7612E-05 360.1808910996358 16.18 1.3973 14.964 14.619 16.016 -1.2159 138 39 4 0 0 0 0.77497 1 2623 2623 21.59 10.791 1 14098000 11371 7398 7190 7193 11634 11634 -0.015338037102765156 EEQRVHSPP 9 Unmodified _EEQRVHSPP_ 0 0 0 ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF;nc|ENSG00000197771|Q9BTE3-3|MCMBP ENSG00000197771|ENST00000369077|MCMBP ENSG00000197771|ENST00000369077|MCMBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20233154296875 3 360.180717 1077.52032 -0.5075 -0.00018279 0.40028 0.00014417 -0.10722 -3.8619E-05 360.1808449096896 16.327 1.4145 15.106 14.644 16.058 -1.2219 130 40 4 0 0 0 0.52027 1 2293 2293 18.373 6.8552 1 9381200 11372 7398 7190 7193 11635 11635 -0.015338037102765156 EEQRVHSPP 9 Unmodified _EEQRVHSPP_ 0 0 0 ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF;nc|ENSG00000197771|Q9BTE3-3|MCMBP ENSG00000197771|ENST00000369077|MCMBP ENSG00000197771|ENST00000369077|MCMBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.27197265625 2 539.767437 1077.52032 -0.39058 -0.00021082 0.61866 0.00033393 0.22808 0.00012311 539.7677454969887 16.294 1.4492 15.072 14.609 16.058 -1.2219 128 41 4 0 0 0 0.6427 1 2347 2347 14.838 0.93222 1 8310700 11373 7398 7190 7193 11636 11636 -0.015338037102765156 EEQRVHSPP 9 Unmodified _EEQRVHSPP_ 0 0 0 ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF;nc|ENSG00000197771|Q9BTE3-3|MCMBP ENSG00000197771|ENST00000369077|MCMBP ENSG00000197771|ENST00000369077|MCMBP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 539.767437 1077.52032 -0.39058 -0.00021082 0.61866 0.00033393 0.22808 0.00012311 539.7677454969887 16.294 1.4492 15.072 14.609 16.058 -1.2219 -0.022256 0.00026801 NaN 24.021 128 41 4 NaN NaN NaN NaN 0 NaN NaN 0 8310700 11374 7398 7190 7193 -0.015338037102765156 EEQSAGVIRNT 11 Unmodified _EEQSAGVIRNT_ 0 0 0 nc|ENSG00000176438|Q6ZMZ3-3|SYNE3;nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3;ENST00000555759.1_1_14:95918480-95934190:-|nuORF nc|ENSG00000176438|Q6ZMZ3-3|SYNE3 nc|ENSG00000176438|Q6ZMZ3-3|SYNE3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.30078125 2 602.301841 1202.58913 0.39166 0.0002359 -0.10643 -6.4105E-05 0.28523 0.00017179 602.3017349751108 24.903 0.37531 23.369 23.163 23.538 -1.5342 17 10 2 0 0 0 0.42307 1 4069 4069 27.088 3.2986 1 791940 11375 6467 7191 7194 11637 11637 -0.004061842012333727 EEQSFKVEV 9 Unmodified _EEQSFKVEV_ 0 0 0 ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7720336914062 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 87.505 1 87.505 87.005 88.005 0 0 0 0 0.14378 1 17084 17084 31.268 9.5217 1 11376 7410 7192 7195 11638 11638 -0.01386874864465426 EEQSFKVEV 9 Unmodified _EEQSFKVEV_ 0 0 0 ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77294921875 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 90.996 1 87.137 86.637 87.637 -3.8595 0 0 0 0.23508 1 17807 17807 12.241 0.60036 1 11377 7410 7192 7195 11639 11639 -0.01386874864465426 EEQSFKVEV 9 Unmodified _EEQSFKVEV_ 0 0 0 ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7933349609375 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 90.884 1 87.106 86.606 87.606 -3.7779 0 0 0 0.23508 1 17395 17395 8.7454 0.15213 1 11378 7410 7192 7195 11640 11640 -0.01386874864465426 EEQSNYLPI 9 Unmodified _EEQSNYLPI_ 0 0 0 REV__ENST00000366527.4_3_1:245016579-245016717:-|nuORF REV__ENST00000366527.4_3_1:245016579-245016717:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7671508789062 2 546.764029 1091.5135 0.019142 1.0466E-05 0.38048 0.00020803 0.39962 0.0002185 546.764139145607 61.689 1.6469 61.689 61.047 62.694 0 130 47 4 0 0 0 0.38188 1 11929 11929 26.884 0 1 31724000 + 11379 20899 7193 7196 11641 11641 -0.02859161381525155 EEQSNYLPI 9 Unmodified _EEQSNYLPI_ 0 0 0 REV__ENST00000366527.4_3_1:245016579-245016717:-|nuORF REV__ENST00000366527.4_3_1:245016579-245016717:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7857666015625 2 546.764029 1091.5135 0.21662 0.00011844 0.06322 3.4567E-05 0.27984 0.000153 546.7639861552817 64.918 1.4681 61.871 61.276 62.744 -3.047 133 42 4 0 0 0 0.48644 1 12656 12656 20.454 0 1 36253000 + 11380 20899 7193 7196 11642 11642 -0.02859161381525155 EEQSNYLPI 9 Unmodified _EEQSNYLPI_ 0 0 0 REV__ENST00000366527.4_3_1:245016579-245016717:-|nuORF REV__ENST00000366527.4_3_1:245016579-245016717:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7684326171875 2 546.764029 1091.5135 0.38004 0.00020779 -0.11198 -6.1226E-05 0.26806 0.00014657 546.7638840076986 65.071 1.6517 61.788 61.139 62.791 -3.2832 139 47 4 0 0 0 0.25702 1 12138 12138 34.102 0 1 31852000 + 11381 20899 7193 7196 11643 11643 -0.02859161381525155 EEQTLSIPY 9 Unmodified _EEQTLSIPY_ 0 0 0 ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1 ENSG00000152092|ENST00000361833|ASTN1 ENSG00000152092|ENST00000361833|ASTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2684326171875 2 540.266404 1078.51826 -0.21206 -0.00011457 0.068812 3.7177E-05 -0.14325 -7.7392E-05 540.266524431922 109.89 0.75748 105.51 105.14 105.89 -4.3776 55 21 3 0 0 0 0.54354 1 21610 21610 16.942 0.79319 1 7549400 11382 4901 7194 7197 11644 11644 -0.017862772387616133 EEQTVVYVV 9 Unmodified _EEQTVVYVV_ 0 0 0 ENSG00000127311|ENST00000247815|HELB ENSG00000127311|ENST00000247815|HELB ENSG00000127311|ENST00000247815|HELB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2678833007812 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 114.54 1 110.06 109.56 110.56 -4.4726 0 0 0 0.19687 1 22572 22572 8.1555 5.5243 1 11383 3469 7195 7198 11645 11645 0.009303131409069465 EEQVAWALT 9 Unmodified _EEQVAWALT_ 0 0 0 NSUN6|p.E379K|1|0.11|ENSG00000241058|chr10:18548174-18548174|C/T|missense_variant;NSUN6|p.F459Lfs*6|3|0.4|ENSG00000241058|chr10:18545966-18545966|A/-|frameshift_variant;ENSG00000241058|ENST00000377304|NSUN6 NSUN6|p.E379K|1|0.11|ENSG00000241058|chr10:18548174-18548174|C/T|missense_variant NSUN6|p.E379K|1|0.11|ENSG00000241058|chr10:18548174-18548174|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6787109375 2 523.761289 1045.50803 -0.41409 -0.00021689 0.45834 0.00024006 0.044242 2.3172E-05 523.7615578904365 96.492 1.0753 92.257 91.776 92.851 -4.2348 121 30 6 0 0 0 0.5059 1 18533 18533 19.257 2.3147 1 69748000 11384 7849 7196 7199 11646 11646 -0.01290840173351171 EEQYYMMRRYE 11 Unmodified _EEQYYMMRRYE_ 0 0 0 nc|ENSG00000172673|Q8N1K5-3|THEMIS;nc|ENSG00000172673|Q8N1K5-2|THEMIS;ENSG00000172673|ENST00000368248|THEMIS;nc|ENSG00000172673|Q8N1K5-4|THEMIS nc|ENSG00000172673|Q8N1K5-3|THEMIS nc|ENSG00000172673|Q8N1K5-3|THEMIS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2696533203125 3 533.230643 1596.6701 NaN NaN NaN NaN NaN NaN NaN 53.63 1 53.63 53.13 54.13 0 0 0 0 0.22632 1 10217 10217 0.58532 0.079364 1 11385 6235 7197 7200 11647 11647 -0.10436987544994736 EEQYYPPYD 9 Unmodified _EEQYYPPYD_ 0 0 0 REV__CNN2|p.E298D|1|0.39|ENSG00000064666|chr19:1037864-1037864|A/C|missense_variant REV__CNN2|p.E298D|1|0.39|ENSG00000064666|chr19:1037864-1037864|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2786865234375 2 602.245669 1202.47678 NaN NaN NaN NaN NaN NaN NaN 51.795 1 48.912 48.412 49.412 -2.8824 0 0 0 0.23508 1 9845 9845 11.64 0.81637 1 + 11386 13459 7198 7201 11648 11648 -0.11635457998090715 EERADLIAY 9 Unmodified _EERADLIAY_ 0 0 0 ENSG00000172115|ENST00000305786|CYCS ENSG00000172115|ENST00000305786|CYCS ENSG00000172115|ENST00000305786|CYCS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.274658203125 2 540.272021 1078.52949 0.34954 0.00018884 -0.40577 -0.00021923 -0.056233 -3.0381E-05 540.2718543314428 84.709 1.8696 84.709 84.171 86.041 0 168 52 6 0 0 0 0.034893 3 16560 16515;16560;16605 85.642 40.552 1 497340000 11387 6193 7199 7202 11649;11650;11651 11650 -0.006634551446268233 EERADLIAY 9 Unmodified _EERADLIAY_ 0 0 0 ENSG00000172115|ENST00000305786|CYCS ENSG00000172115|ENST00000305786|CYCS ENSG00000172115|ENST00000305786|CYCS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2747802734375 2 540.272021 1078.52949 0.10819 5.8452E-05 -0.18997 -0.00010263 -0.081776 -4.4182E-05 540.2719840664093 88.51 1.451 84.717 84.195 85.646 -3.7926 145 40 6 0 0 0 0.034893 4 17295 17245;17293;17295;17384 75.761 43.977 1 476960000 11388 6193 7199 7202 11652;11653;11654;11655 11654 -0.006634551446268233 EERADLIAY 9 Unmodified _EERADLIAY_ 0 0 0 ENSG00000172115|ENST00000305786|CYCS ENSG00000172115|ENST00000305786|CYCS ENSG00000172115|ENST00000305786|CYCS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2748413085938 2 540.272021 1078.52949 0.47973 0.00025918 -0.50428 -0.00027245 -0.024547 -1.3262E-05 540.2718081897343 88.683 1.5568 84.687 84.188 85.745 -3.9953 139 44 5 0 0 0 0.075017 3 16872 16872;16921;16967 69.105 25.333 1 409770000 11389 6193 7199 7202 11656;11657;11658 11656 -0.006634551446268233 EERADLIAY 9 Unmodified _EERADLIAY_ 0 0 0 ENSG00000172115|ENST00000305786|CYCS ENSG00000172115|ENST00000305786|CYCS ENSG00000172115|ENST00000305786|CYCS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2744140625 2 540.272021 1078.52949 0.27857 0.0001505 -0.34022 -0.00018381 -0.061646 -3.3306E-05 540.2718967068143 88.507 1.8171 84.757 84.189 86.006 -3.7501 166 51 5 0 0 0 0.12517 3 16939 16939;16990;17083 51.63 15.503 1 401310000 11390 6193 7199 7202 11659;11660;11661 11659 -0.006634551446268233 EERAGGRRR 9 Unmodified _EERAGGRRR_ 0 0 0 ENST00000402752.5_1_22:20105009-20106543:+|nuORF ENST00000402752.5_1_22:20105009-20106543:+|nuORF ENST00000402752.5_1_22:20105009-20106543:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.781982421875 2 543.797395 1085.58024 0.43171 0.00023476 1.8145 0.00098674 2.2462 0.0012215 543.7984117728662 38.18 0.52971 38.18 38.001 38.531 0 19 14 2 0 0 0 0.60061 1 7119 7119 13.042 0 1 1143300 11391 9519 7200 7203 11662 11662 0.04086931743609057 EERAGGRRR 9 Unmodified _EERAGGRRR_ 0 0 0 ENST00000402752.5_1_22:20105009-20106543:+|nuORF ENST00000402752.5_1_22:20105009-20106543:+|nuORF ENST00000402752.5_1_22:20105009-20106543:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7852172851562 2 543.797395 1085.58024 NaN NaN NaN NaN NaN NaN NaN 49.995 1 46.988 46.488 47.488 -3.0068 0 0 0 0.22251 1 9178 9178 16.942 0 1 11392 9519 7200 7203 11663 11663 0.04086931743609057 EERAPRMGCM 10 Unmodified _EERAPRMGCM_ 0 0 0 ENST00000470092.1_1_20:30640227-30659618:+|nuORF;HCK|p.R213Efs*77|1|0.27|ENSG00000101336|chr20:32083993-32083993|C/-|frameshift_variant;nc|ENSG00000101336|P08631-4|HCK;ENSG00000101336|ENST00000375852|HCK ENST00000470092.1_1_20:30640227-30659618:+|nuORF ENST00000470092.1_1_20:30640227-30659618:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2557373046875 2 590.25701 1178.49947 NaN NaN NaN NaN NaN NaN NaN 55.425 1 52.289 51.789 52.789 -3.1352 0 0 0 2.8426 1 10244 10244 1.914 1.8847 1 11393 2058 7201 7204 11664 11664 -0.08264176677448631 EERATVTPG 9 Unmodified _EERATVTPG_ 0 0 0 nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3;ENST00000333554.4_9:40307429-40337427:+|nuORF;ENST00000483502.2_1_9:39099869-39100100:-|nuORF;ENST00000451450.1_9:40307429-40322734:+|nuORF nc|ENSG00000283378|Q9BZ76-2|CNTNAP3 nc|ENSG00000283378|Q9BZ76-2|CNTNAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24542236328125 2 480.243264 958.471974 -0.15699 -7.5394E-05 -0.2688 -0.00012909 -0.42579 -0.00020448 480.24316696020605 55.624 1.0625 55.624 55.122 56.185 0 69 29 3 0 0 0 0.54354 1 10610 10610 16.942 1.0951 1 6081700 11394 2402 7202 7205 11665 11665 -0.008922973501739762 EERCPKSL 8 Unmodified _EERCPKSL_ 0 0 0 REV__ENST00000175506.8_1_7:97499104-97501078:-|nuORF REV__ENST00000175506.8_1_7:97499104-97501078:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2434997558594 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 70.582 1 67.002 66.502 67.502 -3.5798 0 0 0 0.22676 1 13305 13305 0.62683 0 1 + 11395 19983 7203 7206 11666 11666 -0.011950493596373235 EERDPLWRPQ 10 Unmodified _EERDPLWRPQ_ 0 0 0 REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 663.3359985351562 2 663.333476 1324.6524 NaN NaN NaN NaN NaN NaN NaN 171.14 1 166.35 165.85 166.85 -4.7898 0 0 0 0.22588 1 34775 34775 3.2813 0.28607 1 + 11396 15734 7204 7207 11667 11667 0.003058013066493004 EERDRKCSA 9 Unmodified _EERDRKCSA_ 0 0 0 ENSG00000171806|ENST00000310392|METTL18;METTL18|p.R253Lfs*4|1|0.03|ENSG00000171806|chr1:169792939-169792940|-/TAGACTGTTAA|frameshift_variant;METTL18|p.S267Ffs*3|1|0.12|ENSG00000171806|chr1:169792896-169792897|-/A|frameshift_variant;METTL18|p.S267Lfs*12|1|0.28|ENSG00000171806|chr1:169792897-169792897|A/-|frameshift_variant ENSG00000171806|ENST00000310392|METTL18 ENSG00000171806|ENST00000310392|METTL18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7748413085938 2 547.256379 1092.49821 0.3493 0.00019116 0.19415 0.00010625 0.54345 0.00029741 547.2563201653354 35.626 0.79422 35.626 34.995 35.789 0 29 22 2 0 0 0 0.8319 1 6480 6480 7.9102 0 1 1970800 11397 6173 7205 7208 11668 11668 -0.044343514503680126 EERDTFREA 9 Unmodified _EERDTFREA_ 0 0 0 ENST00000310473.7_1_11:73692559-73694259:-|nuORF ENST00000310473.7_1_11:73692559-73694259:-|nuORF ENST00000310473.7_1_11:73692559-73694259:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3223266601562 2 576.767634 1151.52072 0.059455 3.4292E-05 0.19936 0.00011498 0.25881 0.00014928 576.7677402959725 23.312 0.49445 21.858 21.612 22.107 -1.4535 48 13 5 0 0 0 0.044345 1 3739 3739 90.135 50.185 1 38371000 11398 8639 7206 7209 11669 11669 -0.048984287810981186 EERDTFREA 9 Unmodified _EERDTFREA_ 0 0 0 ENST00000310473.7_1_11:73692559-73694259:-|nuORF ENST00000310473.7_1_11:73692559-73694259:-|nuORF ENST00000310473.7_1_11:73692559-73694259:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3129272460938 2 576.767634 1151.52072 -0.39268 -0.00022649 0.5786 0.00033372 0.18591 0.00010723 576.7679440386028 23.582 0.52328 21.793 21.526 22.049 -1.7886 48 14 4 0 0 0 0.091344 1 3787 3787 76.825 49.196 1 22042000 11399 8639 7206 7209 11670 11670 -0.048984287810981186 EERDTFREA 9 Unmodified _EERDTFREA_ 0 0 0 ENST00000310473.7_1_11:73692559-73694259:-|nuORF ENST00000310473.7_1_11:73692559-73694259:-|nuORF ENST00000310473.7_1_11:73692559-73694259:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.767634 1151.52072 0.29678 0.00017117 -0.0028235 -1.6285E-06 0.29395 0.00016954 576.767624716434 21.848 0.62124 21.848 21.602 22.223 0 0.0027329 -3.0167E-05 NaN 90.135 46 17 4 NaN NaN NaN NaN 0 NaN NaN 0 29952000 11400 8639 7206 7209 -0.048984287810981186 EERDTFREA 9 Unmodified _EERDTFREA_ 0 0 0 ENST00000310473.7_1_11:73692559-73694259:-|nuORF ENST00000310473.7_1_11:73692559-73694259:-|nuORF ENST00000310473.7_1_11:73692559-73694259:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 576.767634 1151.52072 0.83803 0.00048335 -0.61731 -0.00035604 0.22072 0.0001273 576.7672945823226 23.435 0.49868 21.882 21.653 22.151 -1.5532 0.036471 -0.000739 NaN 90.135 45 13 5 NaN NaN NaN NaN 0 NaN NaN 0 29723000 11401 8639 7206 7209 -0.048984287810981186 EEREGITVY 9 Unmodified _EEREGITVY_ 0 0 0 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7686157226562 2 548.269478 1094.5244 0.014568 7.9873E-06 0.23679 0.00012983 0.25136 0.00013781 548.2695631548572 62.437 0.79338 62.437 61.972 62.766 0 61 22 4 0 0 0 0.054822 1 11979 11979 86.332 34.917 1 25259000 11402 1102 7207 7210 11671 11671 -0.019077590072356543 EEREGITVY 9 Unmodified _EEREGITVY_ 0 0 0 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7857666015625 2 548.269478 1094.5244 0.19079 0.0001046 0.0095178 5.2183E-06 0.20031 0.00010982 548.2694147657207 65.549 0.83832 62.502 62.038 62.876 -3.047 72 24 4 0 0 0 0.078741 1 12656 12656 79.596 24.823 1 27172000 11403 1102 7207 7210 11672 11672 -0.019077590072356543 EEREGITVY 9 Unmodified _EEREGITVY_ 0 0 0 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.767822265625 2 548.269478 1094.5244 0.27515 0.00015086 0.34348 0.00018832 0.61863 0.00033918 548.2694157805406 65.978 0.94434 62.52 61.926 62.87 -3.4581 84 26 7 0 0 0 0.10378 1 12356 12356 74.2 28.46 1 22203000 11404 1102 7207 7210 11673 11673 -0.019077590072356543 EEREGITVY 9 Unmodified _EEREGITVY_ 0 0 0 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7686157226562 2 548.269478 1094.5244 0.38193 0.0002094 0.0097021 5.3194E-06 0.39163 0.00021472 548.2693630422243 65.706 0.93313 62.423 61.995 62.928 -3.2832 85 26 5 0 0 0 0.025708 2 12367 12367;12388 86.332 40.592 1 23188000 11405 1102 7207 7210 11674;11675 11674 -0.019077590072356543 EEREGITVY 9 Unmodified _EEREGITVY_ 0 0 0 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.784912109375 2 548.269478 1094.5244 0.30279 0.00016601 -2.4557 -0.0013464 -2.1529 -0.0011804 548.2692707326345 62.622 1.0037 59.382 58.929 59.932 -3.2395 53 28 3 0 0 0 0.77734 1 11776 11776 19.257 3.1079 1 1911800 11406 1102 7207 7210 11676 11676 -0.019077590072356543 EERELPPAA 9 Unmodified _EERELPPAA_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000497580.5_1_9:128094832-128103560:+|nuORF nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 507.2633972167969 2 506.258914 1010.50327 -0.68347 -0.00034601 0.84837 0.0004295 0.1649 8.3484E-05 506.2591560610185 18.718 0.35485 17.392 17.222 17.577 -1.3251 24 9 3 0 0 0 0.62102 1 2816 2816 11.64 3.047 1 3144600 11407 5610 7208 7211 11677 11677 -0.0015572431610735293 EERELPPAA 9 Unmodified _EERELPPAA_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000497580.5_1_9:128094832-128103560:+|nuORF nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 506.258914 1010.50327 0.13245 6.7053E-05 0.065561 3.3191E-05 0.19801 0.00010024 506.2588148801617 17.499 0.38258 17.499 17.31 17.693 0 0.042789 -0.00029179 NaN 11.64 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3998100 11408 5610 7208 7211 -0.0015572431610735293 EERELPPAA 9 Unmodified _EERELPPAA_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000497580.5_1_9:128094832-128103560:+|nuORF nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 506.258914 1010.50327 -0.056559 -2.8633E-05 0.21131 0.00010698 0.15475 7.8345E-05 506.2588500095428 18.789 0.44809 17.478 17.245 17.693 -1.3109 0.021412 -0.00014422 NaN 11.64 29 12 4 NaN NaN NaN NaN 0 NaN NaN 0 4344500 11409 5610 7208 7211 -0.0015572431610735293 EERELTGP 8 Unmodified _EERELTGP_ 0 0 0 REV__nc|ENSG00000149657|Q9BX40-3|LSM14B REV__nc|ENSG00000149657|Q9BX40-3|LSM14B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24713134765625 2 465.729989 929.445425 0.6266 0.00029183 -0.97826 -0.0004556 -0.35165 -0.00016377 465.729528276736 110.81 0.73994 106.58 106.06 106.8 -4.2289 48 20 3 0 0 0 0.96284 1 21233 21233 19.439 5.5329 1 3850000 + 11410 24094 7209 7212 11678 11678 -0.0221198624152521 EEREQMGGSG 10 Unmodified _EEREQMGGSG_ 0 0 0 REV__ENST00000565081.1_1_16:30205844-30205925:+|nuORF REV__ENST00000565081.1_1_16:30205844-30205925:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20367431640625 3 360.485589 1078.43494 -0.07016 -2.5292E-05 -1.0784 -0.00038876 -1.1486 -0.00041405 360.4851483858041 23.075 1.3422 21.621 20.764 22.107 -1.4535 68 33 3 0 0 0 0.75679 1 3677 3677 3.5871 1.0886 1 1220200 + 11411 23104 7210 7213 11679 11679 -0.10114336958258718 EEREQMGGSG 10 Unmodified _EEREQMGGSG_ 0 0 0 REV__ENST00000565081.1_1_16:30205844-30205925:+|nuORF REV__ENST00000565081.1_1_16:30205844-30205925:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 360.485589 1078.43494 -0.07016 -2.5292E-05 -1.0784 -0.00038876 -1.1486 -0.00041405 360.4851483858041 23.075 1.3422 21.621 20.764 22.107 -1.4535 -0.13093 0.00022812 NaN 3.5871 68 33 3 NaN NaN NaN NaN 0 NaN NaN 0 1220200 + 11412 23104 7210 7213 -0.10114336958258718 EERGGESAE 9 Unmodified _EERGGESAE_ 0 0 0 REV__ENST00000567409.1_1_16:31366575-31368500:+|nuORF REV__ENST00000567409.1_1_16:31366575-31368500:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7855224609375 2 482.204335 962.394118 0.030044 1.4487E-05 -0.64099 -0.00030909 -0.61094 -0.0002946 482.2039271436416 44.868 0.53152 42.078 41.778 42.31 -2.79 28 14 3 0 0 0 0.8319 1 8450 8450 12.532 0 1 2419000 + 11413 23129 7211 7214 11680 11680 -0.08858355006225338 EERGGESAE 9 Unmodified _EERGGESAE_ 0 0 0 REV__ENST00000567409.1_1_16:31366575-31368500:+|nuORF REV__ENST00000567409.1_1_16:31366575-31368500:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 482.204335 962.394118 0.23235 0.00011204 -0.55917 -0.00026963 -0.32682 -0.00015759 482.20391361497377 42.068 0.74126 42.068 41.828 42.569 0 -0.059538 -0.0001007 NaN 12.532 32 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1939700 + 11414 23129 7211 7214 -0.08858355006225338 EERGRLEFRR 10 Unmodified _EERGRLEFRR_ 0 0 0 REV__ENSG00000105538|ENST00000222145|RASIP1 REV__ENSG00000105538|ENST00000222145|RASIP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.0942687988281 3 449.912853 1346.71673 NaN NaN NaN NaN NaN NaN NaN 17.839 1 16.324 15.824 16.824 -1.5148 0 0 0 0.22588 1 2614 2614 0.69767 0 1 + 11415 14999 7212 7215 11681 11681 0.05724001183443761 EERGSRSH 8 Unmodified _EERGSRSH_ 0 0 0 ENSG00000139174|ENST00000345127|PRICKLE1 ENSG00000139174|ENST00000345127|PRICKLE1 ENSG00000139174|ENST00000345127|PRICKLE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7429504394531 2 479.228479 956.442405 0.25198 0.00012075 -0.25729 -0.0001233 -0.0053188 -2.5489E-06 479.22781220971336 32.585 1.3292 30.438 30.028 31.357 -2.1468 49 37 2 0 0 0 0.74718 1 5661 5661 18.135 11.412 1 840960 11416 4228 7213 7216 11682 11682 -0.03755816575664994 EERIDITKSA 10 Unmodified _EERIDITKSA_ 0 0 0 REV__ENSG00000085840|ENST00000371568|ORC1 REV__ENSG00000085840|ENST00000371568|ORC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.71966552734375 3 387.875182 1160.60372 NaN NaN NaN NaN NaN NaN NaN 17.593 1 17.593 17.093 18.093 0 0 0 0 2.8426 1 2793 2793 0.013265 0 1 + 11417 14479 7214 7217 11683 11683 0.029838879469025414 EERIKDEY 8 Unmodified _EERIKDEY_ 0 0 0 REV__ENSG00000174574|ENST00000432648|AKIRIN1 REV__ENSG00000174574|ENST00000432648|AKIRIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.262451171875 2 541.261653 1080.50875 0.080655 4.3655E-05 0.28145 0.00015234 0.3621 0.00019599 541.2624079180208 57.006 0.73027 54.111 53.718 54.448 -2.8944 32 20 3 0 0 0 0.68128 1 10888 10888 16.942 1.0951 1 1186400 + 11418 18421 7215 7218 11684 11684 -0.028280455242793323 EERIKDEY 8 Unmodified _EERIKDEY_ 0 0 0 REV__ENSG00000174574|ENST00000432648|AKIRIN1 REV__ENSG00000174574|ENST00000432648|AKIRIN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2846069335938 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 77.232 1 73.768 73.268 74.268 -3.4633 0 0 0 0.21452 1 15074 15074 13.508 1.8676 1 + 11419 18421 7215 7218 11685 11685 -0.028280455242793323 EERIRVTG 8 Unmodified _EERIRVTG_ 0 0 0 ENST00000456936.3_1_5:114961636-114961864:-|nuORF ENST00000456936.3_1_5:114961636-114961864:-|nuORF ENST00000456936.3_1_5:114961636-114961864:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2545471191406 2 480.267073 958.519593 0.40002 0.00019212 -1.1913 -0.00057212 -0.79124 -0.00038001 480.2664157553113 32.675 0.69997 30.527 30.071 30.771 -2.1483 36 19 3 0 0 0 0.73426 1 5635 5635 9.3474 0.75416 1 2033300 11420 10031 7216 7219 11686 11686 0.038674016406730516 EERIRVTG 8 Unmodified _EERIRVTG_ 0 0 0 ENST00000456936.3_1_5:114961636-114961864:-|nuORF ENST00000456936.3_1_5:114961636-114961864:-|nuORF ENST00000456936.3_1_5:114961636-114961864:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.267073 958.519593 -0.0019642 -9.4336E-07 -0.39654 -0.00019045 -0.39851 -0.00019139 480.2667987441573 30.489 0.49377 30.489 30.199 30.693 0 0.0073112 0.00030391 NaN 9.3474 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2870000 11421 10031 7216 7219 0.038674016406730516 EERIRVTG 8 Unmodified _EERIRVTG_ 0 0 0 ENST00000456936.3_1_5:114961636-114961864:-|nuORF ENST00000456936.3_1_5:114961636-114961864:-|nuORF ENST00000456936.3_1_5:114961636-114961864:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.267073 958.519593 0.14268 6.8525E-05 -0.53504 -0.00025696 -0.39236 -0.00018844 480.2666547862017 32.705 0.45586 30.475 30.224 30.68 -2.2305 -0.0068521 0.00017088 NaN 9.3474 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2145400 11422 10031 7216 7219 0.038674016406730516 EERIRVTG 8 Unmodified _EERIRVTG_ 0 0 0 ENST00000456936.3_1_5:114961636-114961864:-|nuORF ENST00000456936.3_1_5:114961636-114961864:-|nuORF ENST00000456936.3_1_5:114961636-114961864:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.267073 958.519593 0.26993 0.00012964 -0.76047 -0.00036523 -0.49054 -0.00023559 480.2665717285768 32.582 0.80044 30.435 29.888 30.688 -2.1468 -0.046103 -4.5657E-05 NaN 9.3474 36 22 3 NaN NaN NaN NaN 0 NaN NaN 0 2730600 11423 10031 7216 7219 0.038674016406730516 EERITPPN 8 Unmodified _EERITPPN_ 0 0 0 REV__nc|ENSG00000101871|O15344-2|MID1 REV__nc|ENSG00000101871|O15344-2|MID1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7330627441406 2 478.245806 954.47706 NaN NaN NaN NaN NaN NaN NaN 81.853 1 78.165 77.665 78.665 -3.6879 0 0 0 0.21486 1 15598 15598 10.824 0.64053 1 + 11424 14804 7217 7220 11687 11687 -0.0019999348756982727 EERITYNKEQ 10 Unmodified _EERITYNKEQ_ 0 0 0 REV__ENSG00000102290|ENST00000682573|PCDH11X REV__ENSG00000102290|ENST00000682573|PCDH11X MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2166442871094 3 437.217608 1308.63099 NaN NaN NaN NaN NaN NaN NaN 101.08 1 96.917 96.417 97.417 -4.1594 0 0 0 0.22588 1 19870 19870 10.899 3.8619 1 + 11425 14833 7218 7221 11688 11688 -0.010976285127071606 EERKGMVA 8 Unmodified _EERKGMVA_ 0 0 0 ENSG00000124588|ENST00000380455|NQO2 ENSG00000124588|ENST00000380455|NQO2 ENSG00000124588|ENST00000380455|NQO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2318115234375 2 460.236927 918.459301 0.25367 0.00011675 -0.026095 -1.201E-05 0.22758 0.00010474 460.23690636442586 30.185 0.46203 30.185 29.884 30.346 0 20 12 2 0 0 0 0.58432 1 5379 5379 23.148 1.4018 1 1843500 11426 3324 7219 7222 11689 11689 -0.003190320140674885 EERKIESA 8 Unmodified _EERKIESA_ 0 0 0 REV__TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant REV__TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7734680175781 2 481.251089 960.487624 0.36212 0.00017427 -0.31154 -0.00014993 0.050575 2.4339E-05 481.25080571076177 30.179 0.34945 28.287 28.101 28.45 -1.8928 15 9 2 0 0 0 8448 1 5180 5180 14.838 10.122 1 643740 + 11427 14273 7220 7223 11690 11690 0.005799891668516466 EERKKRKI 8 Unmodified _EERKKRKI_ 0 0 0 nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK nc|ENSG00000168297|Q7Z7A4-3|PXK nc|ENSG00000168297|Q7Z7A4-3|PXK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.76953125 2 543.840739 1085.66693 NaN NaN NaN NaN NaN NaN NaN 39.583 1 39.583 39.083 40.083 0 0 0 0 0.21486 1 7351 7351 5.2307 0 1 11428 5894 7221 7224 11691 11691 0.1275191824547619 EERKLLQY 8 Unmodified _EERKLLQY_ 0 0 0 REV__ENSG00000152402|ENST00000526355|GUCY1A2 REV__ENSG00000152402|ENST00000526355|GUCY1A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 85.351 1 81.687 81.187 82.187 -3.6641 0 0 0 0.21486 1 16686 16686 3.5965 0.8613 1 + 11429 17108 7222 7225 11692 11692 0.0461712798901317 EERKLLQY 8 Unmodified _EERKLLQY_ 0 0 0 REV__ENSG00000152402|ENST00000526355|GUCY1A2 REV__ENSG00000152402|ENST00000526355|GUCY1A2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20111083984375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 85.511 1 81.582 81.082 82.082 -3.9288 0 0 0 0.21486 1 16265 16265 1.4819 0.15237 1 + 11430 17108 7222 7225 11693 11693 0.0461712798901317 EERKLLQY 8 Unmodified _EERKLLQY_ 0 0 0 REV__ENSG00000152402|ENST00000526355|GUCY1A2 REV__ENSG00000152402|ENST00000526355|GUCY1A2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 85.318 1 81.606 81.106 82.106 -3.7117 0 0 0 0.21486 1 16299 16299 3.5965 1.098 1 + 11431 17108 7222 7225 11694 11694 0.0461712798901317 EERKQKRL 8 Unmodified _EERKQKRL_ 0 0 0 REV__KPNA1|p.L33R|1|0.11|ENSG00000114030|chr3:122496468-122496468|A/C|missense_variant REV__KPNA1|p.L33R|1|0.11|ENSG00000114030|chr3:122496468-122496468|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7946166992188 2 543.822547 1085.63054 NaN NaN NaN NaN NaN NaN NaN 44.875 1 42.127 41.627 42.627 -2.7475 0 0 0 0.21486 1 8129 8129 11.64 1.5664 1 + 11432 15361 7223 7226 11695 11695 0.09115041348741215 EERLDKAC 8 Unmodified _EERLDKAC_ 0 0 0 ENSG00000125730|ENST00000245907|C3;ENST00000599668.1_1_19:6677895-6679444:-|nuORF;ENST00000599899.5_1_19:6677895-6682275:-|nuORF ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.4410400390625 3 321.823653 962.44913 NaN NaN NaN NaN NaN NaN NaN 49.969 1 49.969 49.469 50.469 0 0 0 0 0.21486 1 9454 9454 1.6526 0.58116 1 11433 3379 7224 7227 11696 11696 -0.0335963973931257 EERLGGTQGP 10 Unmodified _EERLGGTQGP_ 0 0 0 REV__ENST00000287652.8_1_3:10321371-10321626:+|nuORF REV__ENST00000287652.8_1_3:10321371-10321626:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.260009765625 2 522.259445 1042.50434 -0.55578 -0.00029026 0.35216 0.00018392 -0.20361 -0.00010634 522.2597949790296 35.501 0.62021 33.248 32.881 33.501 -2.2527 24 17 2 0 0 0 0.37059 1 6202 6202 32.786 4.2988 1 1096200 + 11434 20342 7225 7228 11697 11697 -0.015215099471561189 EERLKKPPRLQ 11 Unmodified _EERLKKPPRLQ_ 0 0 0 nc|ENSG00000130653|Q6ZV29-2|PNPLA7;PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant;nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7 nc|ENSG00000130653|Q6ZV29-2|PNPLA7 nc|ENSG00000130653|Q6ZV29-2|PNPLA7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2508239746094 3 465.280654 1392.82013 NaN NaN NaN NaN NaN NaN NaN 76.102 1 72.468 71.968 72.968 -3.6337 0 0 0 0.22632 1 14481 14481 0.11104 0 1 11435 3623 7226 7229 11698 11698 0.139434885712717 EERLKYYRILI 11 Unmodified _EERLKYYRILI_ 0 0 0 RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant;RASSF9|p.E309Vfs*9|1|0.05|ENSG00000198774|chr12:85805084-85805085|-/AAATA|frameshift_variant;ENSG00000198774|ENST00000361228|RASSF9 RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 499.2042236328125 3 499.292559 1494.85585 0.1966 9.8163E-05 -3.4751 -0.0017351 -3.2785 -0.0016369 499.2909119316422 140.13 0.13797 140.13 140.05 140.19 0 5 3 2 0 0 0 0.89084 1 27901 27901 0.00056442 0 1 2268400 11436 7490 7227 7230 11699 11699 0.1282152602827864 EERLLHRAK 9 Unmodified _EERLLHRAK_ 0 0 0 nc|ENSG00000136720|O60243-2|HS6ST1;ENSG00000136720|ENST00000259241|HS6ST1 nc|ENSG00000136720|O60243-2|HS6ST1 nc|ENSG00000136720|O60243-2|HS6ST1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3358154296875 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 45.704 1 45.704 45.204 46.204 0 0 0 0 0.23508 1 8595 8595 11.64 3.7301 1 11437 4033 7228 7231 11700 11700 0.08778730240078403 EERLRAPPP 9 Unmodified _EERLRAPPP_ 0 0 0 nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3 nc|ENSG00000067842|Q16720-4|ATP2B3 nc|ENSG00000067842|Q16720-4|ATP2B3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.273193359375 2 532.795998 1063.57744 0.65708 0.00035009 -0.66007 -0.00035168 -0.0029927 -1.5945E-06 532.7954921210054 32.271 0.31332 30.245 30.079 30.392 -2.0264 17 8 3 0 0 0 0.8204 1 5609 5609 8.5933 3.8373 1 923280 11438 1396 7229 7232 11701 11701 0.048196635660815446 EERLRAPPP 9 Unmodified _EERLRAPPP_ 0 0 0 nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3 nc|ENSG00000067842|Q16720-4|ATP2B3 nc|ENSG00000067842|Q16720-4|ATP2B3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.795998 1063.57744 0.12215 6.5079E-05 -0.24437 -0.0001302 -0.12222 -6.5119E-05 532.795927829204 30.273 0.35684 30.273 30.06 30.417 0 0.043856 0.00029633 NaN 8.5933 17 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1194800 11439 1396 7229 7232 0.048196635660815446 EERLRAPPP 9 Unmodified _EERLRAPPP_ 0 0 0 nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3 nc|ENSG00000067842|Q16720-4|ATP2B3 nc|ENSG00000067842|Q16720-4|ATP2B3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.795998 1063.57744 0.22707 0.00012098 -0.22569 -0.00012024 0.0013874 7.3922E-07 532.7957741973887 32.427 0.32249 30.196 30.008 30.331 -2.2305 -0.033126 0.00031624 NaN 8.5933 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 716610 11440 1396 7229 7232 0.048196635660815446 EERLRAPPP 9 Unmodified _EERLRAPPP_ 0 0 0 nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3 nc|ENSG00000067842|Q16720-4|ATP2B3 nc|ENSG00000067842|Q16720-4|ATP2B3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.795998 1063.57744 0.5076 0.00027045 -0.74424 -0.00039653 -0.23664 -0.00012608 532.7955304477703 32.352 0.31624 30.204 29.999 30.316 -2.1483 -0.025898 -0.00023633 NaN 8.5933 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 775290 11441 1396 7229 7232 0.048196635660815446 EERLRVQFLA 10 Unmodified _EERLRVQFLA_ 0 0 0 nc|ENSG00000288550|Q8NAC3|IL17RC nc|ENSG00000288550|Q8NAC3|IL17RC nc|ENSG00000288550|Q8NAC3|IL17RC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7676391601562 2 630.856586 1259.69862 NaN NaN NaN NaN NaN NaN NaN 127.35 1 122.65 122.15 123.15 -4.6998 0 0 0 0.22588 1 24496 24496 6.7232 1.4263 1 11442 12653 7230 7233 11702 11702 0.07915866208759326 EERLSSCPCQ 10 Unmodified _EERLSSCPCQ_ 0 0 0 REV__ENST00000372309.7_2_9:133997886-133998192:+|nuORF REV__ENST00000372309.7_2_9:133997886-133998192:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3189697265625 2 576.244623 1150.47469 0.41388 0.00023849 1.4099 0.00081246 1.8238 0.0010509 576.2455069036067 125.76 0.6983 120.99 120.65 121.35 -4.7681 29 19 2 0 0 0 0.87854 1 24113 24113 9.3831 0 1 2923500 + 11443 21021 7231 7234 11703 11703 -0.09452533279181807 EERMKLNLK 9 Unmodified _EERMKLNLK_ 0 0 0 REV__IFI16|p.I227Nfs*42|1|0.46|ENSG00000163565|chr1:159018351-159018352|-/A|frameshift_variant REV__IFI16|p.I227Nfs*42|1|0.46|ENSG00000163565|chr1:159018351-159018352|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.72161865234375 3 387.553386 1159.63833 0.36251 0.00014049 -0.65618 -0.00025431 -0.29367 -0.00011381 387.5532150630715 22.08 0.56536 20.605 20.34 20.905 -1.4742 57 15 5 0 0 0 0.77797 1 3712 3712 2.7352 0 1 30023000 + 11444 17585 7232 7235 11704 11704 0.0648943255400809 EERNWSSA 8 Unmodified _EERNWSSA_ 0 0 0 REV__nc|ENSG00000100167|Q9UH03-2|SEPTIN3 REV__nc|ENSG00000100167|Q9UH03-2|SEPTIN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2556457519531 2 489.717413 977.420273 0.27881 0.00013654 -0.28757 -0.00014083 -0.0087581 -4.289E-06 489.71722455343394 30.776 0.49255 28.701 28.464 28.956 -2.0743 22 13 2 0 0 0 0.40222 1 5277 5277 32.305 3.8186 1 927040 + 11445 14671 7233 7236 11705 11705 -0.06934041044098649 EERNWSSA 8 Unmodified _EERNWSSA_ 0 0 0 REV__nc|ENSG00000100167|Q9UH03-2|SEPTIN3 REV__nc|ENSG00000100167|Q9UH03-2|SEPTIN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27410888671875 2 489.717413 977.420273 0.27881 0.00013654 -0.28757 -0.00014083 -0.0087581 -4.289E-06 489.71722455343394 30.776 0.49255 28.701 28.464 28.956 -2.0743 22 13 2 0 0 0 0.96386 1 5263 5263 20.454 5.6154 1 927040 + 11446 14671 7233 7236 11706 11706 -0.06934041044098649 EERPEVAGIS 10 Unmodified _EERPEVAGIS_ 0 0 0 ENST00000300087.6_1_16:23652742-23652823:+|nuORF ENST00000300087.6_1_16:23652742-23652823:+|nuORF ENST00000300087.6_1_16:23652742-23652823:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7750854492188 2 543.774928 1085.5353 -0.22307 -0.0001213 0.29589 0.0001609 0.072821 3.9598E-05 543.7751097387014 16.172 0.52327 14.956 14.727 15.25 -1.2159 43 14 4 0 0 0 0.10004 1 2522 2522 60.074 0.70553 1 57030000 11447 8543 7234 7237 11707 11707 -0.004043566329301029 EERQEATV 8 Unmodified _EERQEATV_ 0 0 0 ENST00000467243.5_1_9:140449693-140459078:-|nuORF;ENST00000479650.5_1_9:140449693-140459532:-|nuORF;ENSG00000148399|ENST00000277540|DPH7 ENST00000467243.5_1_9:140449693-140459078:-|nuORF ENST00000467243.5_1_9:140449693-140459078:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2320556640625 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 79.293 1 75.617 75.117 76.117 -3.676 0 0 0 0.20896 1 15106 15106 18.135 3.5533 1 11448 4743 7235 7238 11708 11708 -0.030568877298605912 EERQFLAPP 9 Unmodified _EERQFLAPP_ 0 0 0 nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2;SHANK2|p.Q852Sfs*20|1|0.32|ENSG00000162105|chr11:70486603-70486604|-/G|frameshift_variant;SHANK2|p.T905Sfs*11|1|0.27|ENSG00000162105|chr11:70486442-70486443|-/C|frameshift_variant;SHANK2|p.I1007Sfs*18|1|0.27|ENSG00000162105|chr11:70486136-70486137|-/C|frameshift_variant;SHANK2|p.P1067Sfs*36|1|0.11|ENSG00000162105|chr11:70485957-70485958|-/A|frameshift_variant;SHANK2|p.P1101Lfs*73|1|0.06|ENSG00000162105|chr11:70485854-70485854|G/-|frameshift_variant nc|ENSG00000162105|Q9UPX8-4|SHANK2 nc|ENSG00000162105|Q9UPX8-4|SHANK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.782470703125 2 543.782556 1085.55056 0.28691 0.00015601 -0.17133 -9.3165E-05 0.11558 6.285E-05 543.78235821687 86.286 0.8774 86.286 85.859 86.737 0 57 24 4 0 0 0 0.09885 3 16819 16819;16834;16878 56.177 27.095 1 6344800 11449 5314 7236 7239 11709;11710;11711 11709 0.011205549548776617 EERQFLAPP 9 Unmodified _EERQFLAPP_ 0 0 0 nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2;SHANK2|p.Q852Sfs*20|1|0.32|ENSG00000162105|chr11:70486603-70486604|-/G|frameshift_variant;SHANK2|p.T905Sfs*11|1|0.27|ENSG00000162105|chr11:70486442-70486443|-/C|frameshift_variant;SHANK2|p.I1007Sfs*18|1|0.27|ENSG00000162105|chr11:70486136-70486137|-/C|frameshift_variant;SHANK2|p.P1067Sfs*36|1|0.11|ENSG00000162105|chr11:70485957-70485958|-/A|frameshift_variant;SHANK2|p.P1101Lfs*73|1|0.06|ENSG00000162105|chr11:70485854-70485854|G/-|frameshift_variant nc|ENSG00000162105|Q9UPX8-4|SHANK2 nc|ENSG00000162105|Q9UPX8-4|SHANK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.771240234375 2 543.782556 1085.55056 0.15675 8.5235E-05 -0.11364 -6.1794E-05 0.043109 2.3442E-05 543.7825115047583 90.34 0.70782 86.48 86.116 86.824 -3.8595 52 19 3 0 0 0 0.081765 4 17692 17626;17692;17716;17730 61.357 25.23 1 6239100 11450 5314 7236 7239 11712;11713;11714;11715 11713 0.011205549548776617 EERQFLAPP 9 Unmodified _EERQFLAPP_ 0 0 0 nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2;SHANK2|p.Q852Sfs*20|1|0.32|ENSG00000162105|chr11:70486603-70486604|-/G|frameshift_variant;SHANK2|p.T905Sfs*11|1|0.27|ENSG00000162105|chr11:70486442-70486443|-/C|frameshift_variant;SHANK2|p.I1007Sfs*18|1|0.27|ENSG00000162105|chr11:70486136-70486137|-/C|frameshift_variant;SHANK2|p.P1067Sfs*36|1|0.11|ENSG00000162105|chr11:70485957-70485958|-/A|frameshift_variant;SHANK2|p.P1101Lfs*73|1|0.06|ENSG00000162105|chr11:70485854-70485854|G/-|frameshift_variant nc|ENSG00000162105|Q9UPX8-4|SHANK2 nc|ENSG00000162105|Q9UPX8-4|SHANK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7835083007812 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 52.645 1 49.761 49.261 50.261 -2.8837 0 0 0 0.21065 1 10022 10022 20.454 2.3073 1 11451 5314 7236 7239 11716 11716 0.011205549548776617 EERQFLAPP 9 Unmodified _EERQFLAPP_ 0 0 0 nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2;SHANK2|p.Q852Sfs*20|1|0.32|ENSG00000162105|chr11:70486603-70486604|-/G|frameshift_variant;SHANK2|p.T905Sfs*11|1|0.27|ENSG00000162105|chr11:70486442-70486443|-/C|frameshift_variant;SHANK2|p.I1007Sfs*18|1|0.27|ENSG00000162105|chr11:70486136-70486137|-/C|frameshift_variant;SHANK2|p.P1067Sfs*36|1|0.11|ENSG00000162105|chr11:70485957-70485958|-/A|frameshift_variant;SHANK2|p.P1101Lfs*73|1|0.06|ENSG00000162105|chr11:70485854-70485854|G/-|frameshift_variant nc|ENSG00000162105|Q9UPX8-4|SHANK2 nc|ENSG00000162105|Q9UPX8-4|SHANK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78271484375 2 543.782556 1085.55056 0.36768 0.00019994 -0.20694 -0.00011253 0.16074 8.7405E-05 543.782323939369 90.508 0.77071 86.463 86.021 86.792 -4.0443 48 21 3 0 0 0 0.029716 1 17239 17239 81.89 41.94 1 4689600 11452 5314 7236 7239 11717 11717 0.011205549548776617 EERQFLAPP 9 Unmodified _EERQFLAPP_ 0 0 0 nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2;SHANK2|p.Q852Sfs*20|1|0.32|ENSG00000162105|chr11:70486603-70486604|-/G|frameshift_variant;SHANK2|p.T905Sfs*11|1|0.27|ENSG00000162105|chr11:70486442-70486443|-/C|frameshift_variant;SHANK2|p.I1007Sfs*18|1|0.27|ENSG00000162105|chr11:70486136-70486137|-/C|frameshift_variant;SHANK2|p.P1067Sfs*36|1|0.11|ENSG00000162105|chr11:70485957-70485958|-/A|frameshift_variant;SHANK2|p.P1101Lfs*73|1|0.06|ENSG00000162105|chr11:70485854-70485854|G/-|frameshift_variant nc|ENSG00000162105|Q9UPX8-4|SHANK2 nc|ENSG00000162105|Q9UPX8-4|SHANK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7825927734375 2 543.782556 1085.55056 0.25382 0.00013802 -0.29241 -0.00015901 -0.038586 -2.0983E-05 543.782403332799 90.232 0.83837 86.454 85.943 86.782 -3.7779 54 23 3 0 0 0 0.24122 2 17254 17254;17299 29.082 18.206 1 5095400 11453 5314 7236 7239 11718;11719 11718 0.011205549548776617 EERQFLAPP 9 Unmodified _EERQFLAPP_ 0 0 0 nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2;SHANK2|p.Q852Sfs*20|1|0.32|ENSG00000162105|chr11:70486603-70486604|-/G|frameshift_variant;SHANK2|p.T905Sfs*11|1|0.27|ENSG00000162105|chr11:70486442-70486443|-/C|frameshift_variant;SHANK2|p.I1007Sfs*18|1|0.27|ENSG00000162105|chr11:70486136-70486137|-/C|frameshift_variant;SHANK2|p.P1067Sfs*36|1|0.11|ENSG00000162105|chr11:70485957-70485958|-/A|frameshift_variant;SHANK2|p.P1101Lfs*73|1|0.06|ENSG00000162105|chr11:70485854-70485854|G/-|frameshift_variant nc|ENSG00000162105|Q9UPX8-4|SHANK2 nc|ENSG00000162105|Q9UPX8-4|SHANK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7832641601562 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 52.9 1 49.805 49.305 50.305 -3.0954 0 0 0 0.21065 1 9773 9773 20.454 3.5113 1 11454 5314 7236 7239 11720 11720 0.011205549548776617 EERQPPPPP 9 Unmodified _EERQPPPPP_ 0 0 0 REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6972045898438 2 523.766906 1045.51926 0.22943 0.00012017 0.06314 3.3071E-05 0.29257 0.00015324 523.7667363873418 25.338 1.6976 25.338 23.863 25.561 0 103 49 3 0 0 0 0.54076 1 4180 4180 17.113 1.8644 1 2471800 + 11455 20995 7237 7240 11721 11721 -0.0016801807919364364 EERQPPPPP 9 Unmodified _EERQPPPPP_ 0 0 0 REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6835327148438 2 523.766906 1045.51926 NaN NaN NaN NaN NaN NaN NaN 16.517 1 16.517 16.017 17.017 0 0 0 0 0.23048 1 2569 2569 14.582 2.9414 1 + 11456 20995 7237 7240 11722 11722 -0.0016801807919364364 EERQPPPPP 9 Unmodified _EERQPPPPP_ 0 0 0 REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6861572265625 2 523.766906 1045.51926 NaN NaN NaN NaN NaN NaN NaN 25.423 1 25.423 24.923 25.923 0 0 0 0 0.1599 1 4409 4409 29.082 4.0906 1 + 11457 20995 7237 7240 11723 11723 -0.0016801807919364364 EERQPPPPP 9 Unmodified _EERQPPPPP_ 0 0 0 REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6892700195312 2 523.766906 1045.51926 NaN NaN NaN NaN NaN NaN NaN 25.588 1 23.94 23.44 24.44 -1.6482 0 0 0 0.20294 1 4491 4491 22.736 3.3743 1 + 11458 20995 7237 7240 11724 11724 -0.0016801807919364364 EERQPPPPP 9 Unmodified _EERQPPPPP_ 0 0 0 REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6969604492188 2 523.766906 1045.51926 0.85196 0.00044623 -0.95106 -0.00049814 -0.099099 -5.1905E-05 523.7665040324413 27.114 1.698 25.332 24.039 25.737 -1.7821 85 48 2 0 0 0 0.45788 1 4891 4891 32.786 0 1 4147700 + 11459 20995 7237 7240 11725 11725 -0.0016801807919364364 EERQPPPPP 9 Unmodified _EERQPPPPP_ 0 0 0 REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6844482421875 2 523.766906 1045.51926 -0.35616 -0.00018655 0.1905 9.9777E-05 -0.16566 -8.6769E-05 524.2683829667465 27.081 1.9513 25.446 23.926 25.877 -1.6347 111 55 3 0 0 0 0.44932 1 4208 4208 22.736 2.3217 1 4641100 + 11460 20995 7237 7240 11726 11726 -0.0016801807919364364 EERQPPPPP 9 Unmodified _EERQPPPPP_ 0 0 0 REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF REV__ENST00000371080.5_1_1:64239708-64475003:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.690185546875 2 523.766906 1045.51926 -0.24932 -0.00013058 0.071191 3.7288E-05 -0.17813 -9.3297E-05 523.7668315304013 28.646 0.80329 26.891 26.597 27.4 -1.7552 41 22 2 0 0 0 0.77734 1 4914 4914 13.906 13.906 1 735500 + 11461 20995 7237 7240 11727 11727 -0.0016801807919364364 EERRATSL 8 Unmodified _EERRATSL_ 0 0 0 GRB7|p.R96Afs*8|1|0.32|ENSG00000141738|chr17:39742692-39742692|C/-|frameshift_variant;GRB7|p.G86Afs*18|1|0.17|ENSG00000141738|chr17:39742663-39742663|G/-|frameshift_variant;ENST00000584053.1_1_17:37896424-37899062:+|nuORF;ENST00000584819.5_1_17:37894608-37899062:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7 GRB7|p.R96Afs*8|1|0.32|ENSG00000141738|chr17:39742692-39742692|C/-|frameshift_variant GRB7|p.R96Afs*8|1|0.32|ENSG00000141738|chr17:39742692-39742692|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25445556640625 2 481.256705 960.498858 NaN NaN NaN NaN NaN NaN NaN 101.49 1 97.327 96.827 97.827 -4.1594 0 0 0 0.21323 1 19944 19944 14.582 0 1 11462 4393 7238 7241 11728 11728 0.017028112609978052 EERRLRQRNRR 11 Unmodified _EERRLRQRNRR_ 0 0 0 UTP18|p.L78R|1|0.35|ENSG00000011260|chr17:51260817-51260817|T/G|missense_variant UTP18|p.L78R|1|0.35|ENSG00000011260|chr17:51260817-51260817|T/G|missense_variant UTP18|p.L78R|1|0.35|ENSG00000011260|chr17:51260817-51260817|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6915283203125 3 523.636605 1567.88799 NaN NaN NaN NaN NaN NaN NaN 92.403 1 92.403 91.903 92.903 0 0 0 0 0.22632 1 18065 18065 0.0059557 0 1 11463 26564 7239 7242 11729 11729 0.12675751274628055 EERRLRQRNRR 11 Unmodified _EERRLRQRNRR_ 0 0 0 UTP18|p.L78R|1|0.35|ENSG00000011260|chr17:51260817-51260817|T/G|missense_variant UTP18|p.L78R|1|0.35|ENSG00000011260|chr17:51260817-51260817|T/G|missense_variant UTP18|p.L78R|1|0.35|ENSG00000011260|chr17:51260817-51260817|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6783447265625 3 523.636605 1567.88799 NaN NaN NaN NaN NaN NaN NaN 96.016 1 91.966 91.466 92.466 -4.0496 0 0 0 0.23698 1 18824 18824 2.4348 2.0265 1 11464 26564 7239 7242 11730 11730 0.12675751274628055 EERRRQEDYWR 11 Unmodified _EERRRQEDYWR_ 0 0 0 ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2848510742188 3 541.597593 1621.77095 NaN NaN NaN NaN NaN NaN NaN 38.671 1 36.229 35.729 36.729 -2.4419 0 0 0 0.23698 1 6889 6889 0.45452 0.37117 1 11465 2524 7240 7243 11731 11731 -0.015064514556115682 EERRRSMQ 8 Unmodified _EERRRSMQ_ 0 0 0 REV__ENST00000372067.7_1_6:43753147-43753534:+|nuORF REV__ENST00000372067.7_1_6:43753147-43753534:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.772216796875 2 546.272364 1090.53017 -0.30912 -0.00016886 -0.25823 -0.00014106 -0.56735 -0.00030993 546.2721874417598 23.688 2.7126 21.899 20.851 23.564 -1.7886 234 78 5 0 0 0 0.79017 1 3647 3647 4.756 0 1 74350000 + 11466 21018 7241 7244 11732 11732 -0.011469389765579763 EERRSPRN 8 Unmodified _EERRSPRN_ 0 0 0 ENST00000519889.5_1_8:95905124-95906171:-|nuORF;CCNE2|p.R42Efs*38|1|0.07|ENSG00000175305|chr8:94893932-94893932|T/-|frameshift_variant ENST00000519889.5_1_8:95905124-95906171:-|nuORF ENST00000519889.5_1_8:95905124-95906171:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2677612304688 2 522.270678 1042.5268 NaN NaN NaN NaN NaN NaN NaN 24.762 1 23.228 22.728 23.728 -1.5342 0 0 0 0.23312 1 4044 4044 6.2058 0 1 11467 430 7242 7245 11733 11733 0.00724134241113461 EERRYLQSA 9 Unmodified _EERRYLQSA_ 0 0 0 nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS nc|ENSG00000160285|P48449-2|LSS nc|ENSG00000160285|P48449-2|LSS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3297729492188 2 576.293819 1150.57309 0.33313 0.00019198 -0.42882 -0.00024712 -0.095686 -5.5143E-05 576.2934079539885 24.338 0.44864 24.338 24.132 24.58 0 24 12 3 0 0 0 0.13904 2 4189 4186;4189 45.74 20.975 1 3636100 11468 5244 7243 7246 11734;11735 11735 0.003821543525418747 EERRYLQSA 9 Unmodified _EERRYLQSA_ 0 0 0 nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS nc|ENSG00000160285|P48449-2|LSS nc|ENSG00000160285|P48449-2|LSS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3319091796875 2 576.293819 1150.57309 1.1488 0.00066207 -1.3122 -0.00075623 -0.1634 -9.4166E-05 576.2928517067162 26.133 0.48065 24.351 24.105 24.586 -1.7821 29 13 3 0 0 0 0.043105 1 4611 4611 74.2 28.179 1 2695500 11469 5244 7243 7246 11736 11736 0.003821543525418747 EERRYLQSA 9 Unmodified _EERRYLQSA_ 0 0 0 nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS nc|ENSG00000160285|P48449-2|LSS nc|ENSG00000160285|P48449-2|LSS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.293819 1150.57309 0.22311 0.00012858 0.057701 3.3253E-05 0.28081 0.00016183 576.293696819055 25.963 0.45224 24.328 24.096 24.548 -1.6347 0.0078265 0.00049392 NaN 74.2 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3632000 11470 5244 7243 7246 0.003821543525418747 EERRYLQSA 9 Unmodified _EERRYLQSA_ 0 0 0 nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS nc|ENSG00000160285|P48449-2|LSS nc|ENSG00000160285|P48449-2|LSS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.293819 1150.57309 -0.00030946 -1.7834E-07 0.82369 0.00047469 0.82338 0.00047451 576.2935808191494 26.186 0.95967 24.264 23.849 24.808 -1.9222 -0.056063 0.0013768 NaN 74.2 51 27 3 NaN NaN NaN NaN 0 NaN NaN 0 2593200 11471 5244 7243 7246 0.003821543525418747 EERSKELVNGY 11 Unmodified _EERSKELVNGY_ 0 0 0 REV__tr|U7T401|U7T401_FUSNUPurinenucleosidephosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00191PE=3SV=1 REV__tr|U7T401|U7T401_FUSNUPurinenucleosidephosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00191PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 662.223876953125 2 662.330598 1322.64664 NaN NaN NaN NaN NaN NaN NaN 169.98 1 169.98 169.48 170.48 0 0 0 0 0.22501 1 34920 34920 12.241 0 1 + 11472 25382 7244 7247 11737 11737 -0.0017734199566348252 EERSKYDY 8 Unmodified _EERSKYDY_ 0 0 0 ENSG00000183508|ENST00000369448|TENT5C ENSG00000183508|ENST00000369448|TENT5C ENSG00000183508|ENST00000369448|TENT5C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 545.2463989257812 2 545.246003 1088.47745 0.020864 1.1376E-05 -0.16064 -8.7591E-05 -0.13978 -7.6215E-05 545.2458878283419 55.513 0.5913 52.629 52.247 52.839 -2.8837 42 16 3 0 0 0 0.72861 1 10567 10567 10.183 0 1 12726000 11473 6851 7245 7248 11738 11738 -0.06324618558369366 EERSKYDY 8 Unmodified _EERSKYDY_ 0 0 0 ENSG00000183508|ENST00000369448|TENT5C ENSG00000183508|ENST00000369448|TENT5C ENSG00000183508|ENST00000369448|TENT5C MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 545.246003 1088.47745 0.38738 0.00021122 -0.5646 -0.00030785 -0.17722 -9.6629E-05 545.2456833757124 52.546 0.67566 52.546 52.182 52.857 0 -0.045723 -0.00030579 NaN 10.183 45 18 3 NaN NaN NaN NaN 0 NaN NaN 0 8002400 11474 6851 7245 7248 -0.06324618558369366 EERSKYDY 8 Unmodified _EERSKYDY_ 0 0 0 ENSG00000183508|ENST00000369448|TENT5C ENSG00000183508|ENST00000369448|TENT5C ENSG00000183508|ENST00000369448|TENT5C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 545.246003 1088.47745 0.08626 4.7033E-05 -0.22356 -0.0001219 -0.1373 -7.4863E-05 545.2459034087777 55.808 0.6642 52.619 52.217 52.881 -3.1895 0.026816 6.6114E-05 NaN 10.183 45 18 3 NaN NaN NaN NaN 0 NaN NaN 0 13709000 11475 6851 7245 7248 -0.06324618558369366 EERSKYDY 8 Unmodified _EERSKYDY_ 0 0 0 ENSG00000183508|ENST00000369448|TENT5C ENSG00000183508|ENST00000369448|TENT5C ENSG00000183508|ENST00000369448|TENT5C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 545.246003 1088.47745 0.080317 4.3793E-05 -0.13918 -7.5888E-05 -0.058863 -3.2095E-05 545.2458536640315 55.75 0.68965 52.574 52.247 52.936 -3.1761 -0.017893 0.00015813 NaN 10.183 44 19 3 NaN NaN NaN NaN 0 NaN NaN 0 11013000 11476 6851 7245 7248 -0.06324618558369366 EERSLCSV 8 Carbamidomethyl (C) _EERSLC(Carbamidomethyl (C))SV_ EERSLC(1)SV EERSLC(44)SV 0 1 0 REV__ENST00000492431.1_1_1:109822777-109824720:-|nuORF REV__ENST00000492431.1_1_1:109822777-109824720:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.264892578125 2 490.229299 978.444045 0.17177 8.4204E-05 -3.2359 -0.0015863 -3.0642 -0.0015021 490.2279716554928 33.267 0.23808 31.052 30.944 31.182 -2.2158 9 6 2 0 0 0 0.2118 1 5785 5785 44.407 8.28 1 342300 + 11477 22334 7246 7249 11739 11739 24 -0.04603943601910032 EERSLCSV 8 Carbamidomethyl (C) _EERSLC(Carbamidomethyl (C))SV_ 0 1 0 REV__ENST00000492431.1_1_1:109822777-109824720:-|nuORF REV__ENST00000492431.1_1_1:109822777-109824720:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 490.229299 978.444045 0.13127 6.4352E-05 -3.3918 -0.0016628 -3.2606 -0.0015984 490.2275905007313 33.275 0.45501 30.957 30.833 31.288 -2.3175 -0.047237 -3.1106E-05 NaN 44.407 13 12 2 NaN NaN NaN NaN 0 NaN NaN 0 395900 + 11478 22334 7246 7249 24 -0.04603943601910032 EERSPFGTR 9 Unmodified _EERSPFGTR_ 0 0 0 REV__ENST00000450185.5_1_2:73225858-73250341:-|nuORF REV__ENST00000450185.5_1_2:73225858-73250341:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2673950195312 2 539.767437 1077.52032 -0.043853 -2.367E-05 -0.37321 -0.00020145 -0.41706 -0.00022512 539.76738374768 21.717 0.55596 20.332 20.108 20.664 -1.3847 43 15 4 0 0 0 0.62314 2 3407 3385;3407 10.074 0 1 3653900 + 11479 21794 7247 7250 11740;11741 11741 -0.01533803710299253 EERSPFGTR 9 Unmodified _EERSPFGTR_ 0 0 0 REV__ENST00000450185.5_1_2:73225858-73250341:-|nuORF REV__ENST00000450185.5_1_2:73225858-73250341:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 539.767437 1077.52032 0.24349 0.00013143 -0.58276 -0.00031456 -0.33927 -0.00018313 539.7671415103569 20.302 0.60477 20.302 20.1 20.705 0 -0.016002 0.00010688 NaN 7.2892 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3326800 + 11480 21794 7247 7250 -0.01533803710299253 EERSPFGTR 9 Unmodified _EERSPFGTR_ 0 0 0 REV__ENST00000450185.5_1_2:73225858-73250341:-|nuORF REV__ENST00000450185.5_1_2:73225858-73250341:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 539.767437 1077.52032 0.71449 0.00038566 -1.0378 -0.00056017 -0.32332 -0.00017452 539.7668435315126 21.795 0.60642 20.321 20.089 20.696 -1.4742 0.0023498 -0.00038435 NaN 7.2892 31 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3908600 + 11481 21794 7247 7250 -0.01533803710299253 EERSPFGTR 9 Unmodified _EERSPFGTR_ 0 0 0 REV__ENST00000450185.5_1_2:73225858-73250341:-|nuORF REV__ENST00000450185.5_1_2:73225858-73250341:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 539.767437 1077.52032 -0.043853 -2.367E-05 -0.37321 -0.00020145 -0.41706 -0.00022512 539.76738374768 21.717 0.55596 20.332 20.108 20.664 -1.3847 0.013653 0.00033311 NaN 7.2892 43 15 4 NaN NaN NaN NaN 0 NaN NaN 0 3653900 + 11482 21794 7247 7250 -0.01533803710299253 EERSSGFRL 9 Unmodified _EERSSGFRL_ 0 0 0 RANBP3|p.D253Tfs*14|1|0.14|ENSG00000031823|chr19:5928025-5928025|T/-|frameshift_variant;ENST00000586344.5_1_19:5917623-5933521:-|nuORF;nc|ENSG00000031823|Q9H6Z4-3|RANBP3;ENST00000592771.5_1_19:5917623-5941693:-|nuORF;nc|ENSG00000031823|Q9H6Z4-2|RANBP3;ENSG00000031823|ENST00000340578|RANBP3 RANBP3|p.D253Tfs*14|1|0.14|ENSG00000031823|chr19:5928025-5928025|T/-|frameshift_variant RANBP3|p.D253Tfs*14|1|0.14|ENSG00000031823|chr19:5928025-5928025|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.268310546875 2 540.775262 1079.53597 0.31723 0.00017155 2.2828 0.0012345 2.6 0.001406 540.776108889144 124.8 0.17517 120.15 120.07 120.24 -4.6495 5 4 2 0 0 0 0.84208 1 24018 24018 7.2892 0 1 920020 11483 1159 7248 7251 11742 11742 -0.000615171932395242 EERTCKHY 8 Unmodified _EERTCKHY_ 0 0 0 REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2842407226562 2 533.242741 1064.47093 NaN NaN NaN NaN NaN NaN NaN 27.612 1 25.616 25.116 26.116 -1.9962 0 0 0 0.21452 1 4626 4626 13.508 1.8676 1 + 11484 16393 7249 7252 11743 11743 -0.05872834990736919 EERTFHIF 8 Unmodified _EERTFHIF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 3 360.182058 1077.52434 -0.13961 -5.0286E-05 0.16599 5.9786E-05 0.026377 9.5005E-06 360.18204973798794 109.13 0.94497 109.13 108.74 109.68 0 59 26 3 0 0 0 0.88839 1 21423 21423 12.241 6.0349 1 6812200 11485 1957 7250 7253 11744 11744 -0.01131714216603541 EERTFHIF 8 Unmodified _EERTFHIF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2018127441406 3 360.182058 1077.52434 0.06489 2.3372E-05 -0.057249 -2.062E-05 0.0076408 2.7521E-06 360.1819477027954 113.38 0.84061 108.85 108.47 109.31 -4.5259 52 23 3 0 0 0 0.70215 1 21781 21781 22.736 9.1214 1 3757000 11486 1957 7250 7253 11745 11745 -0.01131714216603541 EERTFHIF 8 Unmodified _EERTFHIF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2014465332031 3 360.182058 1077.52434 -0.11644 -4.194E-05 0.08352 3.0082E-05 -0.032922 -1.1858E-05 360.1819827319972 113.11 0.98454 108.83 108.36 109.34 -4.2725 63 27 3 0 0 0 0.99885 1 21791 21791 9.3831 1.2276 1 4495400 11487 1957 7250 7253 11746 11746 -0.01131714216603541 EERTRMFN 8 Unmodified _EERTRMFN_ 0 0 0 REV__nc|ENSG00000155229|Q96T76-7|MMS19 REV__nc|ENSG00000155229|Q96T76-7|MMS19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.266845703125 2 541.756015 1081.49748 0.29122 0.00015777 -0.54287 -0.0002941 -0.25165 -0.00013633 541.7549247543726 20.072 0.49473 20.072 19.892 20.387 0 21 11 2 0 0 0 0.70613 1 3329 3329 13.508 2.684 1 941260 + 11488 17210 7251 7254 11747 11747 -0.04001146099403741 EERTRMFN 8 Unmodified _EERTRMFN_ 0 0 0 REV__nc|ENSG00000155229|Q96T76-7|MMS19 REV__nc|ENSG00000155229|Q96T76-7|MMS19 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.756015 1081.49748 0.29122 0.00015777 -0.54287 -0.0002941 -0.25165 -0.00013633 541.7549247543726 20.072 0.49473 20.072 19.892 20.387 0 -0.045364 -0.0001377 NaN 13.508 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 941260 + 11489 17210 7251 7254 -0.04001146099403741 EERVINEEY 9 Unmodified _EERVINEEY_ 0 0 0 nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 nc|ENSG00000162521|Q09028-3|RBBP4 nc|ENSG00000162521|Q09028-3|RBBP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2709350585938 2 590.777667 1179.54078 0.43207 0.00025526 -0.50236 -0.00029678 -0.070285 -4.1523E-05 590.7773410784022 52.056 0.99826 52.056 51.684 52.682 0 90 27 5 0 0 0 0.00044796 1 9887 9887 145.13 48.845 1 314820000 11490 5339 7252 7255 11748 11748 -0.041806778411455525 EERVINEEY 9 Unmodified _EERVINEEY_ 0 0 0 nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 nc|ENSG00000162521|Q09028-3|RBBP4 nc|ENSG00000162521|Q09028-3|RBBP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2647705078125 2 590.777667 1179.54078 0.28662 0.00016933 -0.25917 -0.00015311 0.027446 1.6214E-05 590.777507198044 55.113 0.85643 52.23 51.805 52.662 -2.8837 89 24 5 0 0 0 1.3230000000000001E-33 1 10531 10531 173.69 94.958 1 500360000 11491 5339 7252 7255 11749 11749 -0.041806778411455525 EERVINEEY 9 Unmodified _EERVINEEY_ 0 0 0 nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 nc|ENSG00000162521|Q09028-3|RBBP4 nc|ENSG00000162521|Q09028-3|RBBP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.27490234375 2 590.777667 1179.54078 0.47489 0.00028055 -0.53054 -0.00031343 -0.055655 -3.288E-05 590.7773515761812 55.388 1.0135 52.253 51.887 52.901 -3.1352 106 28 6 0 0 0 6.9307E-11 1 10261 10261 171.09 85.445 1 432580000 11492 5339 7252 7255 11750 11750 -0.041806778411455525 EERVINEEY 9 Unmodified _EERVINEEY_ 0 0 0 nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 nc|ENSG00000162521|Q09028-3|RBBP4 nc|ENSG00000162521|Q09028-3|RBBP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2750854492188 2 590.777667 1179.54078 0.00092348 5.4557E-07 -0.028064 -1.658E-05 -0.027141 -1.6034E-05 590.7776376547273 55.439 1.0741 52.301 51.867 52.941 -3.1377 110 30 5 0 0 0 2.8582E-11 1 10285 10285 160.69 91.585 1 479220000 11493 5339 7252 7255 11751 11751 -0.041806778411455525 EERVQAVV 8 Unmodified _EERVQAVV_ 0 0 0 nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant nc|ENSG00000115306|Q01082-3|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25604248046875 2 465.256174 928.497795 -0.12311 -5.7278E-05 0.011768 5.475E-06 -0.11134 -5.1803E-05 465.2561486702916 47.546 0.66132 44.677 44.357 45.018 -2.869 32 18 2 0 0 0 0.16655 1 8988 8988 49.933 11.959 1 8493400 11494 2844 7253 7256 11752 11752 0.03068596892092046 EERVQAVV 8 Unmodified _EERVQAVV_ 0 0 0 nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant nc|ENSG00000115306|Q01082-3|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2428283691406 2 465.256174 928.497795 -0.033748 -1.5701E-05 -0.27419 -0.00012757 -0.30794 -0.00014327 465.25601911782445 47.634 0.63005 44.691 44.41 45.04 -2.9421 30 17 2 0 0 0 0.14223 2 8668 8668;8678 54.774 8.7526 1 9390000 11495 2844 7253 7256 11753;11754 11753 0.03068596892092046 EERVQAVV 8 Unmodified _EERVQAVV_ 0 0 0 nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant nc|ENSG00000115306|Q01082-3|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25592041015625 2 465.256174 928.497795 -0.088418 -4.1137E-05 -0.065452 -3.0452E-05 -0.15387 -7.1589E-05 465.2560906830753 47.64 0.61668 44.69 44.365 44.982 -2.9499 32 17 2 0 0 0 0.19607 2 8670 8670;8720 46.021 8.047 1 8573400 11496 2844 7253 7256 11755;11756 11755 0.03068596892092046 EERWKRMKDRM 11 Unmodified _EERWKRMKDRM_ 0 0 0 REV__ENST00000517593.5_1_8:109455866-109468189:+|nuORF REV__ENST00000517593.5_1_8:109455866-109468189:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.263916015625 3 522.266022 1563.77624 NaN NaN NaN NaN NaN NaN NaN 84.881 1 80.971 80.471 81.471 -3.9093 0 0 0 0.22632 1 16137 16137 0.026206 0 1 + 11497 13805 7254 7257 11757 11757 0.01689812810946023 EERWRMEMRRY 11 Unmodified _EERWRMEMRRY_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7887573242188 3 547.929409 1640.7664 NaN NaN NaN NaN NaN NaN NaN 102.25 1 98.062 97.562 98.562 -4.1861 0 0 0 0.23698 1 20093 20093 0.45452 0.087843 1 11498 1278 7255 7258 11758 11758 -0.02835375194399603 EERYDDGY 8 Unmodified _EERYDDGY_ 0 0 0 REV__COL11A2|p.I664Rfs*5|1|0.25|ENSG00000204248|chr6:33176034-33176035|TA/-|frameshift_variant REV__COL11A2|p.I664Rfs*5|1|0.25|ENSG00000204248|chr6:33176034-33176035|TA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6837768554688 2 523.706711 1045.39887 NaN NaN NaN NaN NaN NaN NaN 81.891 1 78.334 77.834 78.834 -3.557 0 0 0 0.23312 1 16001 16001 6.2058 0 1 + 11499 13474 7256 7259 11759 11759 -0.12201470863465147 EERYFISH 8 Unmodified _EERYFISH_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2605590820312 2 540.759081 1079.50361 0.65548 0.00035445 -0.69701 -0.00037691 -0.041533 -2.246E-05 540.7586566172632 47.201 0.91686 47.201 46.729 47.646 0 75 25 4 0 0 0 2.1916999999999997E-28 3 8890 8843;8890;8936 191.38 87.632 1 33365000 11500 6180 7257 7260 11760;11761;11762 11761 -0.032963045962333126 EERYFISH 8 Unmodified _EERYFISH_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2603759765625 2 540.759081 1079.50361 0.07055 3.8151E-05 -0.19842 -0.0001073 -0.12787 -6.9149E-05 540.7589699762628 50.192 0.88178 47.311 46.905 47.787 -2.8811 71 24 4 0 0 0 2.1916999999999997E-28 4 9511 9444;9464;9511;9567 191.38 87.632 1 31342000 11501 6180 7257 7260 11763;11764;11765;11766 11765 -0.032963045962333126 EERYFISH 8 Unmodified _EERYFISH_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.260498046875 2 540.759081 1079.50361 0.11893 6.4312E-05 -0.26121 -0.00014125 -0.14228 -7.6942E-05 540.758904706394 50.251 0.87778 47.209 46.86 47.738 -3.0424 77 25 4 0 0 0 2.0898999999999999E-50 5 9212 9156;9163;9212;9263;9303 206.75 91.057 1 36062000 11502 6180 7257 7260 11767;11768;11769;11770;11771 11769 -0.032963045962333126 EERYFISH 8 Unmodified _EERYFISH_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.260498046875 2 540.759081 1079.50361 0.012236 6.6165E-06 -0.18223 -9.854E-05 -0.16999 -9.1924E-05 540.7589445126188 50.215 0.91621 47.209 46.806 47.722 -3.0068 77 26 4 0 0 0 2.0898999999999999E-50 5 9225 9176;9225;9277;9322;9328 206.75 91.057 1 30042000 11503 6180 7257 7260 11772;11773;11774;11775;11776 11773 -0.032963045962333126 EERYGWLAA 9 Unmodified _EERYGWLAA_ 0 0 0 GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant;ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7666625976562 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 109.72 1 109.72 109.22 110.22 0 0 0 0 0.22193 1 21572 21572 17.113 0.1706 1 11504 2793 7258 7261 11777 11777 -0.023760180791896346 EERYGWLAA 9 Unmodified _EERYGWLAA_ 0 0 0 GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant;ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7667236328125 2 547.766906 1093.51926 0.11434 6.2632E-05 -0.42958 -0.00023531 -0.31524 -0.00017268 547.7665283175671 114.23 0.63335 109.75 109.44 110.07 -4.4726 27 17 2 0 0 0 0.17935 5 22511 22463;22478;22481;22511;22560 39.95 20.693 1 2162400 11505 2793 7258 7261 11778;11779;11780;11781;11782 11781 -0.023760180791896346 EERYGWLAA 9 Unmodified _EERYGWLAA_ 0 0 0 GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant;ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.766357421875 2 547.766906 1093.51926 0.1547 8.4737E-05 -0.54371 -0.00029783 -0.38902 -0.00021309 547.7667249111038 114.22 0.59312 109.67 109.38 109.98 -4.555 23 16 2 0 0 0 0.34411 3 21907 21907;21972;21985 29.082 9.8246 1 1644000 11506 2793 7258 7261 11783;11784;11785 11783 -0.023760180791896346 EERYGWLAA 9 Unmodified _EERYGWLAA_ 0 0 0 GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant;ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7667846679688 2 547.766906 1093.51926 0.62558 0.00034267 -0.61874 -0.00033892 0.0068474 3.7508E-06 547.7663258471131 113.99 0.65337 109.68 109.3 109.95 -4.3135 30 18 2 0 0 0 0.17935 2 21974 21927;21974 39.95 19.496 1 2265900 11507 2793 7258 7261 11786;11787 11787 -0.023760180791896346 EERYHECN 8 Unmodified _EERYHECN_ 0 0 0 ENSG00000180787|ENST00000318833|ZFP3 ENSG00000180787|ENST00000318833|ZFP3 ENSG00000180787|ENST00000318833|ZFP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20184326171875 3 360.478546 1078.41381 0.31613 0.00011396 -1.4989 -0.00054032 -1.1828 -0.00042636 360.4779997619952 68.05 0.46209 64.514 64.128 64.59 -3.5362 21 12 2 0 0 0 1.0248 1 12730 12730 6.7232 0 1 1528900 11508 6693 7259 7262 11788 11788 -0.12226302267117717 EESAFRPCR 9 Unmodified _EESAFRPCR_ 0 0 0 REV__ENST00000508684.5_1_4:2845646-2877643:+|nuORF REV__ENST00000508684.5_1_4:2845646-2877643:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77685546875 2 547.756015 1093.49748 NaN NaN NaN NaN NaN NaN NaN 37.911 1 35.442 34.942 35.942 -2.4688 0 0 0 0.14843 1 7011 7011 30.637 11.275 1 + 11509 22515 7260 7263 11789 11789 -0.045531460994197914 EESAPNRL 8 Unmodified _EESAPNRL_ 0 0 0 REV__ENST00000412877.1_1_3:184079592-184081026:+|nuORF REV__ENST00000412877.1_1_3:184079592-184081026:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23040771484375 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 34.969 1 32.693 32.193 33.193 -2.2766 0 0 0 0.21452 1 6142 6142 13.508 0 1 + 11510 21436 7261 7264 11790 11790 -0.0148856652166387 EESAQNRLP 9 Unmodified _EESAQNRLP_ 0 0 0 ENST00000439211.6_1_5:79950594-79950633:-|nuORF ENST00000439211.6_1_5:79950594-79950633:-|nuORF ENST00000439211.6_1_5:79950594-79950633:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2597045898438 2 522.259445 1042.50434 0.20701 0.00010811 -0.13759 -7.1856E-05 0.069424 3.6257E-05 522.2595400602522 33.208 0.55374 33.208 32.92 33.474 0 18 15 2 0 0 0 0.13932 1 6065 6065 45.7 18.071 1 800480 11511 9870 7262 7265 11791 11791 -0.015215099471788562 EESAQNRLP 9 Unmodified _EESAQNRLP_ 0 0 0 ENST00000439211.6_1_5:79950594-79950633:-|nuORF ENST00000439211.6_1_5:79950594-79950633:-|nuORF ENST00000439211.6_1_5:79950594-79950633:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2593994140625 2 522.259445 1042.50434 -0.54394 -0.00028408 0.34197 0.0001786 -0.20197 -0.00010548 522.259752518222 35.445 0.67432 33.051 32.81 33.484 -2.3938 28 18 2 0 0 0 0.12505 1 6571 6571 47.749 20.865 1 848140 11512 9870 7262 7265 11792 11792 -0.015215099471788562 EESAQNRLP 9 Unmodified _EESAQNRLP_ 0 0 0 ENST00000439211.6_1_5:79950594-79950633:-|nuORF ENST00000439211.6_1_5:79950594-79950633:-|nuORF ENST00000439211.6_1_5:79950594-79950633:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2803344726562 2 522.259445 1042.50434 -0.55578 -0.00029026 0.35216 0.00018392 -0.20361 -0.00010634 522.2597949790296 35.501 0.62021 33.248 32.881 33.501 -2.2527 24 17 2 0 0 0 0.12505 3 6238 6238;6248;6297 47.749 20.865 1 1096200 11513 9870 7262 7265 11793;11794;11795 11793 -0.015215099471788562 EESAQNRLP 9 Unmodified _EESAQNRLP_ 0 0 0 ENST00000439211.6_1_5:79950594-79950633:-|nuORF ENST00000439211.6_1_5:79950594-79950633:-|nuORF ENST00000439211.6_1_5:79950594-79950633:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2597045898438 2 522.259445 1042.50434 0.36688 0.00019161 -0.59463 -0.00031055 -0.22775 -0.00011894 522.2592817428671 35.56 0.76761 33.283 32.828 33.595 -2.2766 28 21 2 0 0 0 0.12505 2 6241 6241;6289 47.749 20.865 1 693990 11514 9870 7262 7265 11796;11797 11796 -0.015215099471788562 EESDHSFG 8 Unmodified _EESDHSFG_ 0 0 0 ENST00000543103.1_1_16:57115423-57115483:+|nuORF ENST00000543103.1_1_16:57115423-57115483:+|nuORF ENST00000543103.1_1_16:57115423-57115483:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75933837890625 2 454.175047 906.33554 NaN NaN NaN NaN NaN NaN NaN 123.93 1 119.35 118.85 119.85 -4.5757 0 0 0 0.21486 1 24433 24433 10.183 4.423 1 11515 11098 7263 7266 11798 11798 -0.1213741158069297 EESDQGKY 8 Unmodified _EESDQGKY_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000153707|P23468-3|PTPRD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7213134765625 2 478.203804 954.393055 -0.086634 -4.1429E-05 -0.023566 -1.1269E-05 -0.1102 -5.2698E-05 478.2035965325001 25.622 0.24489 23.768 23.638 23.883 -1.8534 9 6 2 0 0 0 0.69887 1 4218 4218 14.582 4.3983 1 168630 11516 4975;4448 7264 7267 11799 11799 -0.08596569375129093 EESDQGKY 8 Unmodified _EESDQGKY_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000153707|P23468-3|PTPRD MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.203804 954.393055 -0.047222 -2.2582E-05 0.11984 5.7307E-05 0.072617 3.4726E-05 478.20366508586216 23.972 0.30149 23.972 23.899 24.201 0 0.10188 6.6036E-05 NaN 14.582 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 483130 11517 4975;4448 7264 7267 -0.08596569375129093 EESEERDDHL 10 Unmodified _EESEERDDHL_ 0 0 0 ENSG00000003056|ENST00000000412|M6PR ENSG00000003056|ENST00000000412|M6PR ENSG00000003056|ENST00000000412|M6PR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7653198242188 2 629.762746 1257.51094 1.7709 0.0011153 -0.9996 -0.00062951 0.77132 0.00048575 629.7624305721722 28.129 1.2823 26.173 25.803 27.085 -1.9561 128 36 6 0 0 0 0.372 2 5081 5081;5083 14.838 3.8631 1 61692000 11518 967 7265 7268 11800;11801 11800 -0.10751661577137384 EESEFCFLLS 10 Unmodified _EESEFCFLLS_ 0 0 0 REV__ENSG00000118193|ENST00000367350|KIF14 REV__ENSG00000118193|ENST00000367350|KIF14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2854614257812 2 602.265547 1202.51654 NaN NaN NaN NaN NaN NaN NaN 122.65 1 117.92 117.42 118.42 -4.731 0 0 0 0.22588 1 23555 23555 10.824 0 1 + 11519 15542 7266 7269 11802 11802 -0.07661654319008449 EESENEFY 8 Unmodified _EESENEFY_ 0 0 0 MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant;MIS18BP1|p.S991Nfs*17|1|0.35|ENSG00000129534|chr14:45217046-45217050|TGTAC/-|frameshift_variant;MIS18BP1|p.K1063Nfs*18|1|0.14|ENSG00000129534|chr14:45206134-45206134|T/-|frameshift_variant;ENSG00000129534|ENST00000310806|MIS18BP1 MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6898193359375 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 125.37 1 120.73 120.23 121.23 -4.6495 0 0 0 0.23711 1 24123 24123 0.12286 0 1 11520 3569 7267 7270 11803 11803 -0.13324292957599937 EESENQDED 9 Unmodified _EESENQDED_ 0 0 0 nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L nc|ENSG00000168386|Q4L180-6|FILIP1L nc|ENSG00000168386|Q4L180-6|FILIP1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7827758789062 2 547.691455 1093.36836 0.094955 5.2006E-05 0.11309 6.1937E-05 0.20804 0.00011394 548.1938753609388 48.777 0.79593 45.908 45.487 46.283 -2.869 47 22 4 0 0 0 0.87258 1 9302 9302 4.3292 0 1 2393600 11521 5901 7268 7271 11804 11804 -0.17459294039167617 EESEQPEAKR 10 Unmodified _EESEQPEAKR_ 0 0 0 REV__ZNF366|p.S715Lfs*13|1|0.09|ENSG00000178175|chr5:72443848-72443848|A/-|frameshift_variant REV__ZNF366|p.S715Lfs*13|1|0.09|ENSG00000178175|chr5:72443848-72443848|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.28857421875 2 601.786024 1201.55749 1.8913 0.0011382 -1.4414 -0.00086741 0.44992 0.00027075 601.7850408675433 23.822 0.27452 22.269 22.117 22.392 -1.5532 10 7 2 0 0 0 0.33865 1 4139 4139 34.932 13.395 1 518700 + 11522 18590 7269 7272 11805 11805 -0.0352217695519812 EESFDSKFY 9 Unmodified _EESFDSKFY_ 0 0 0 nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3366088867188 2 576.248212 1150.48187 NaN NaN NaN NaN NaN NaN NaN 70.499 1 67.032 66.532 67.532 -3.467 0 0 0 0.23508 1 13352 13352 8.5933 0 1 11523 4633 7270 7273 11806 11806 -0.08735154135456469 EESFEVSY 8 Unmodified _EESFEVSY_ 0 0 0 REV__GAA|p.E748Rfs*16|2|0.3|ENSG00000171298|chr17:80117015-80117015|G/-|frameshift_variant REV__GAA|p.E748Rfs*16|2|0.3|ENSG00000171298|chr17:80117015-80117015|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 495.2209777832031 2 495.208555 988.402557 -0.14056 -6.9608E-05 -0.26226 -0.00012987 -0.40282 -0.00019948 495.2083711143366 112.62 0.48659 108.16 107.91 108.4 -4.4538 15 13 2 0 0 0 0.7908 1 22233 22233 1.7423 0 1 803320 + 11524 18217 7271 7274 11807 11807 -0.09210801089602683 EESFEVSY 8 Unmodified _EESFEVSY_ 0 0 0 REV__GAA|p.E748Rfs*16|2|0.3|ENSG00000171298|chr17:80117015-80117015|G/-|frameshift_variant REV__GAA|p.E748Rfs*16|2|0.3|ENSG00000171298|chr17:80117015-80117015|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 495.208555 988.402557 0.35047 0.00017356 0.0064077 3.1732E-06 0.35688 0.00017673 495.20862430559305 107.98 0.59319 107.98 107.62 108.21 0 -0.091056 7.7933E-05 NaN 1.7423 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1652100 + 11525 18217 7271 7274 -0.09210801089602683 EESFIQKY 8 Unmodified _EESFIQKY_ 0 0 0 REV__tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 REV__tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.256591796875 2 522.25584 1042.49713 -0.21316 -0.00011132 1.0062 0.00052548 0.79301 0.00041416 522.2562688118581 65.595 0.60502 62.548 62.105 62.71 -3.047 20 17 2 0 0 0 0.27274 1 12683 12683 38.151 0 1 1834700 + 11526 25088 7272 7275 11808 11808 -0.022422425476179342 EESFIQKY 8 Unmodified _EESFIQKY_ 0 0 0 REV__tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 REV__tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 522.25584 1042.49713 -0.11245 -5.873E-05 0.90148 0.0004708 0.78903 0.00041207 522.2559506271867 62.358 0.34322 62.358 62.14 62.483 0 -0.10613 -0.00019487 NaN 38.151 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 946340 + 11527 25088 7272 7275 -0.022422425476179342 EESFIQKY 8 Unmodified _EESFIQKY_ 0 0 0 REV__tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 REV__tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.25584 1042.49713 -0.46406 -0.00024236 1.3303 0.00069478 0.86628 0.00045242 522.2562478286363 65.945 0.42328 62.487 62.209 62.632 -3.4581 0.022534 0.00025308 NaN 38.151 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1808200 + 11528 25088 7272 7275 -0.022422425476179342 EESIGILSA 9 Unmodified _EESIGILSA_ 0 0 0 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2443542480469 2 459.742565 917.470577 0.44612 0.0002051 -0.084894 -3.903E-05 0.36123 0.00016607 459.74254855899636 122.83 0.69434 118.1 117.67 118.37 -4.731 30 19 2 0 0 0 0.066709 1 23625 23625 22.621 0 1 1989700 11529 26254 7273 7276 11809 11809 0.008540685610455512 EESIIPNN 8 Unmodified _EESIIPNN_ 0 0 0 REV__tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1 REV__tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2243957519531 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 115.17 1 115.17 114.67 115.67 0 0 0 0 0.22757 1 22664 22664 3.5871 1.8952 1 + 11530 25425 7274 7277 11810 11810 -0.026113886158100286 EESIVYKKR 9 Unmodified _EESIVYKKR_ 0 0 0 REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.32373046875 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 109.16 1 104.97 104.47 105.47 -4.1826 0 0 0 0.19652 1 21006 21006 0.12781 0.054551 1 + 11531 25185 7275 7278 11811 11811 0.06533086051786086 EESKQKLVP 9 Unmodified _EESKQKLVP_ 0 0 0 ENSG00000114388|ENST00000232501|NPRL2;ENST00000467294.1_1_3:50386754-50386910:-|nuORF;ENST00000461020.5_1_3:50386114-50386910:-|nuORF;ENST00000487632.5_1_3:50386199-50386910:-|nuORF;nc|ENSG00000114388|Q8WTW4-2|NPRL2;ENST00000429366.5_1_3:50385517-50386910:-|nuORF ENSG00000114388|ENST00000232501|NPRL2 ENSG00000114388|ENST00000232501|NPRL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 353.8779602050781 3 353.201118 1056.58152 0.26827 9.4754E-05 -0.15234 -5.3805E-05 0.11594 4.0948E-05 353.20103517867994 32.272 1.3315 30.245 29.444 30.776 -2.0264 116 37 4 0 0 0 0.058839 1 5634 5634 54.068 36.956 1 10419000 11532 2787 7276 7279 11812 11812 0.0554970826913177 EESKQKLVP 9 Unmodified _EESKQKLVP_ 0 0 0 ENSG00000114388|ENST00000232501|NPRL2;ENST00000467294.1_1_3:50386754-50386910:-|nuORF;ENST00000461020.5_1_3:50386114-50386910:-|nuORF;ENST00000487632.5_1_3:50386199-50386910:-|nuORF;nc|ENSG00000114388|Q8WTW4-2|NPRL2;ENST00000429366.5_1_3:50385517-50386910:-|nuORF ENSG00000114388|ENST00000232501|NPRL2 ENSG00000114388|ENST00000232501|NPRL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 354.2181701660156 3 353.201118 1056.58152 -0.2305 -8.1414E-05 0.38337 0.00013541 0.15287 5.3992E-05 353.20121853072806 32.389 1.2907 30.241 29.551 30.842 -2.1483 108 36 4 0 0 0 0.15889 1 5613 5613 22.736 22.672 1 8462500 11533 2787 7276 7279 11813 11813 0.0554970826913177 EESKQKLVP 9 Unmodified _EESKQKLVP_ 0 0 0 ENSG00000114388|ENST00000232501|NPRL2;ENST00000467294.1_1_3:50386754-50386910:-|nuORF;ENST00000461020.5_1_3:50386114-50386910:-|nuORF;ENST00000487632.5_1_3:50386199-50386910:-|nuORF;nc|ENSG00000114388|Q8WTW4-2|NPRL2;ENST00000429366.5_1_3:50385517-50386910:-|nuORF ENSG00000114388|ENST00000232501|NPRL2 ENSG00000114388|ENST00000232501|NPRL2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 353.201118 1056.58152 -0.25568 -9.0306E-05 0.26275 9.2804E-05 0.0070719 2.4978E-06 353.2011989114215 30.412 1.0773 30.412 29.782 30.859 0 0.14375 8.1478E-05 NaN 54.068 87 30 4 NaN NaN NaN NaN 0 NaN NaN 0 12408000 11534 2787 7276 7279 0.0554970826913177 EESKQKLVP 9 Unmodified _EESKQKLVP_ 0 0 0 ENSG00000114388|ENST00000232501|NPRL2;ENST00000467294.1_1_3:50386754-50386910:-|nuORF;ENST00000461020.5_1_3:50386114-50386910:-|nuORF;ENST00000487632.5_1_3:50386199-50386910:-|nuORF;nc|ENSG00000114388|Q8WTW4-2|NPRL2;ENST00000429366.5_1_3:50385517-50386910:-|nuORF ENSG00000114388|ENST00000232501|NPRL2 ENSG00000114388|ENST00000232501|NPRL2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 353.201118 1056.58152 -0.10625 -3.7526E-05 0.27506 9.7153E-05 0.16882 5.9627E-05 353.20116971158694 32.405 1.3046 30.175 29.409 30.714 -2.2305 -0.093533 9.4525E-05 NaN 54.068 107 36 4 NaN NaN NaN NaN 0 NaN NaN 0 8842000 11535 2787 7276 7279 0.0554970826913177 EESKSVVSV 9 Unmodified _EESKSVVSV_ 0 0 0 REV__tr|U7SFP2|U7SFP2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02367PE=4SV=1 REV__tr|U7SFP2|U7SFP2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02367PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7765197753906 2 482.253297 962.492041 0.070648 3.407E-05 0.014501 6.9929E-06 0.085149 4.1063E-05 482.2531552351401 39.283 0.80002 36.841 36.373 37.173 -2.4419 33 22 2 0 0 0 0.80521 1 6924 6924 15.847 2.3393 1 1082400 + 11536 24853 7277 7280 11814 11814 0.009294535897765854 EESLEKVQ 8 Unmodified _EESLEKVQ_ 0 0 0 ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant;DNAH11|p.A4348Tfs*8|1|0.06|ENSG00000105877|chr7:21894990-21894991|-/CACTTTA|frameshift_variant;DNAH11|p.N833Tfs*2|1|0.17|ENSG00000105877|chr7:21591404-21591404|A/-|frameshift_variant;DNAH11|p.L3180Sfs*6|1|0.05|ENSG00000105877|chr7:21784481-21784482|-/CAGA|frameshift_variant;DNAH11|p.E3097Nfs*4|1|0.21|ENSG00000105877|chr7:21773946-21773946|A/-|frameshift_variant;DNAH11|p.N3090Kfs*2|1|0.09|ENSG00000105877|chr7:21773928-21773929|-/A|frameshift_variant;DNAH11|p.A2559Sfs*4|1|0.42|ENSG00000105877|chr7:21738723-21738724|-/A|frameshift_variant;DNAH11|p.L441Ifs*25|1|0.26|ENSG00000105877|chr7:21570187-21570188|-/A|frameshift_variant;DNAH11|p.W2255Mfs*9|1|0.04|ENSG00000105877|chr7:21710627-21710628|-/A|frameshift_variant;DNAH11|p.N2201Kfs*6|1|0.04|ENSG00000105877|chr7:21707754-21707755|-/AGTAAAAGATTTC|frameshift_variant;DNAH11|p.C1849Sfs*8|1|0.05|ENSG00000105877|chr7:21683868-21683869|-/CTAAAATTCTCATAAATAG|frameshift_variant;DNAH11|p.K1250Nfs*43|1|0.63|ENSG00000105877|chr7:21606522-21606522|A/-|frameshift_variant;DNAH11|p.C1251Mfs*5|1|0.41|ENSG00000105877|chr7:21606521-21606522|-/A|frameshift_variant;DNAH11|p.Q945Kfs*4|1|0.32|ENSG00000105877|chr7:21599946-21599946|T/-|frameshift_variant;DNAH11|p.K873Nfs*4|1|0.31|ENSG00000105877|chr7:21591523-21591523|A/-|frameshift_variant;DNAH11|p.S2374Qfs*2|1|0.14|ENSG00000105877|chr7:21717910-21717911|-/C|frameshift_variant ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2540588378906 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 81.208 1 77.651 77.151 78.151 -3.557 0 0 0 0.2074 1 15856 15856 19.439 0 1 11537 860 7278 7281 11815 11815 -0.005428329272717747 EESLGRVYK 9 Unmodified _EESLGRVYK_ 0 0 0 REV__ENST00000465997.1_1_20:44463683-44469293:+|nuORF REV__ENST00000465997.1_1_20:44463683-44469293:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2789916992188 2 540.787838 1079.56112 0.59029 0.00031922 -0.20728 -0.00011209 0.38301 0.00020713 540.7876671047107 44.942 0.6632 44.942 44.57 45.233 0 37 18 3 0 0 0 0.42844 1 8476 8476 24.021 2.2739 1 2432500 + 11538 21962 7279 7282 11816 11816 0.024525376093151863 EESLKAEGT 9 Unmodified _EESLKAEGT_ 0 0 0 REV__ENSG00000134438|ENST00000334889|RAX REV__ENSG00000134438|ENST00000334889|RAX MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7828674316406 2 482.235104 962.455655 -0.0081954 -3.9521E-06 -0.004085 -1.9699E-06 -0.01228 -5.922E-06 482.2350721003825 20.136 0.38736 20.136 19.963 20.351 0 18 10 2 0 0 0 0.69259 1 3287 3287 6.7232 0 1 936900 + 11539 16208 7280 7283 11817 11817 -0.027074233069583897 EESLKAEGT 9 Unmodified _EESLKAEGT_ 0 0 0 REV__ENSG00000134438|ENST00000334889|RAX REV__ENSG00000134438|ENST00000334889|RAX MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 482.235104 962.455655 0.52525 0.0002533 -2.0653 -0.00099598 -1.5401 -0.00074268 482.2335766687427 21.46 0.31937 19.985 19.841 20.16 -1.4742 -0.075272 -0.0018983 NaN 6.7232 15 8 3 NaN NaN NaN NaN 0 NaN NaN 0 801120 + 11540 16208 7280 7283 -0.027074233069583897 EESLPYKCI 9 Unmodified _EESLPYKCI_ 0 0 0 REV__GNPAT|p.L587P|1|0.34|ENSG00000116906|chr1:231275237-231275237|T/C|missense_variant REV__GNPAT|p.L587P|1|0.34|ENSG00000116906|chr1:231275237-231275237|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2662353515625 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 30.528 1 30.528 30.028 31.028 0 0 0 0 0.23508 1 5487 5487 12.532 1.732 1 + 11541 23584 7281 7284 11818 11818 -0.020890292482363293 EESLRTIEA 9 Unmodified _EESLRTIEA_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA;ENST00000559156.5_1_15:70968828-70976706:-|nuORF;ENST00000560523.5_1_15:70964229-70991966:-|nuORF;UACA|p.L426Hfs*14|1|0.04|ENSG00000137831|chr15:70669407-70669408|-/AAAT|frameshift_variant;UACA|p.K370T|1|0.18|ENSG00000137831|chr15:70676515-70676515|T/G|missense_variant nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.692138671875 2 524.269478 1046.5244 -0.10644 -5.5802E-05 1.1962 0.00062716 1.0898 0.00057135 524.2699211183932 62.232 0.41737 59.271 58.974 59.392 -2.9614 14 11 2 0 0 0 0.77734 1 11988 11988 19.257 8.4331 1 608120 11542 4118 7282 7285 11819 11819 0.0030024099276033667 EESLRTIEA 9 Unmodified _EESLRTIEA_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA;ENST00000559156.5_1_15:70968828-70976706:-|nuORF;ENST00000560523.5_1_15:70964229-70991966:-|nuORF;UACA|p.L426Hfs*14|1|0.04|ENSG00000137831|chr15:70669407-70669408|-/AAAT|frameshift_variant;UACA|p.K370T|1|0.18|ENSG00000137831|chr15:70676515-70676515|T/G|missense_variant nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 524.269478 1046.5244 -0.12745 -6.6819E-05 2.8903 0.0015153 2.7629 0.0014485 524.2696711449898 59.347 0.54221 59.347 59.141 59.683 0 0.067791 0.0021591 NaN 19.257 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 981500 11543 4118 7282 7285 0.0030024099276033667 EESLRTIEA 9 Unmodified _EESLRTIEA_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA;ENST00000559156.5_1_15:70968828-70976706:-|nuORF;ENST00000560523.5_1_15:70964229-70991966:-|nuORF;UACA|p.L426Hfs*14|1|0.04|ENSG00000137831|chr15:70669407-70669408|-/AAAT|frameshift_variant;UACA|p.K370T|1|0.18|ENSG00000137831|chr15:70676515-70676515|T/G|missense_variant nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 524.269478 1046.5244 -0.35146 -0.00018426 0.77924 0.00040853 0.42778 0.00022427 524.2696796635701 62.616 0.48545 59.201 59.019 59.504 -3.4158 -0.078491 -5.4458E-05 NaN 19.257 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 947970 11544 4118 7282 7285 0.0030024099276033667 EESLRTIEA 9 Unmodified _EESLRTIEA_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA;ENST00000559156.5_1_15:70968828-70976706:-|nuORF;ENST00000560523.5_1_15:70964229-70991966:-|nuORF;UACA|p.L426Hfs*14|1|0.04|ENSG00000137831|chr15:70669407-70669408|-/AAAT|frameshift_variant;UACA|p.K370T|1|0.18|ENSG00000137831|chr15:70676515-70676515|T/G|missense_variant nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.269478 1046.5244 0.27579 0.00014459 -0.056766 -2.9761E-05 0.21902 0.00011483 524.2696340711927 62.537 0.45131 59.298 59.037 59.488 -3.2395 0.018804 -0.00093104 NaN 19.257 17 12 3 NaN NaN NaN NaN 0 NaN NaN 0 930520 11545 4118 7282 7285 0.0030024099276033667 EESNCCMYS 9 Unmodified _EESNCCMYS_ 0 0 0 ENSG00000128710|ENST00000249501|HOXD10 ENSG00000128710|ENST00000249501|HOXD10 ENSG00000128710|ENST00000249501|HOXD10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2737426757812 2 533.169735 1064.32492 0.4923 0.00026248 1.0722 0.00057165 1.5645 0.00083413 533.1702410838279 25.924 0.65691 24.29 24.062 24.719 -1.6347 29 18 3 0 0 0 0.87888 1 4354 4354 4.756 0.42677 1 735680 11546 3539 7283 7286 11820 11820 -0.2046722161330763 EESNFPERS 9 Unmodified _EESNFPERS_ 0 0 0 ENSG00000161040|ENST00000440067|FBXL13;nc|ENSG00000161040|Q8NEE6-4|FBXL13;nc|ENSG00000161040|Q8NEE6-3|FBXL13;nc|ENSG00000161040|Q8NEE6-2|FBXL13;nc|ENSG00000161040|Q8NEE6|FBXL13 ENSG00000161040|ENST00000440067|FBXL13 ENSG00000161040|ENST00000440067|FBXL13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7891845703125 2 547.741085 1093.46762 NaN NaN NaN NaN NaN NaN NaN 82.783 1 79.085 78.585 79.585 -3.6985 0 0 0 0.21844 1 15790 15790 18.146 6.5061 1 11547 5283 7284 7287 11821 11821 -0.07537806563755112 EESNFPERS 9 Unmodified _EESNFPERS_ 0 0 0 ENSG00000161040|ENST00000440067|FBXL13;nc|ENSG00000161040|Q8NEE6-4|FBXL13;nc|ENSG00000161040|Q8NEE6-3|FBXL13;nc|ENSG00000161040|Q8NEE6-2|FBXL13;nc|ENSG00000161040|Q8NEE6|FBXL13 ENSG00000161040|ENST00000440067|FBXL13 ENSG00000161040|ENST00000440067|FBXL13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7830200195312 2 547.741085 1093.46762 NaN NaN NaN NaN NaN NaN NaN 82.902 1 79.203 78.703 79.703 -3.6985 0 0 0 0.23508 1 15816 15816 10.074 0 1 11548 5283 7284 7287 11822 11822 -0.07537806563755112 EESNLQSL 8 Unmodified _EESNLQSL_ 0 0 0 CON__P81644 CON__P81644 CON__P81644 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2350769042969 2 460.221997 918.429441 -0.20927 -9.6312E-05 -0.51073 -0.00023505 -0.72001 -0.00033136 460.22168028732773 49.907 0.87697 47.026 46.66 47.537 -2.8811 31 24 2 0 0 0 0.71876 1 9541 9541 11.64 0.81637 1 971090 + 11549 676 7285 7288 11823 11823 -0.033036924784141775 EESPPPPKV 9 Unmodified _EESPPPPKV_ 0 0 0 ENSG00000004534|ENST00000266022|RBM6;ENST00000454079.5_1_3:50099373-50114563:+|nuORF;ENST00000434592.5_1_3:50097096-50127827:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6 ENSG00000004534|ENST00000266022|RBM6 ENSG00000004534|ENST00000266022|RBM6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2610778808594 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 36.633 1 34.285 33.785 34.785 -2.3479 0 0 0 0.11195 1 6478 6478 36.127 12.979 1 11550 975 7286 7289 11824 11824 0.012100613149982564 EESPPPPKV 9 Unmodified _EESPPPPKV_ 0 0 0 ENSG00000004534|ENST00000266022|RBM6;ENST00000454079.5_1_3:50099373-50114563:+|nuORF;ENST00000434592.5_1_3:50097096-50127827:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6 ENSG00000004534|ENST00000266022|RBM6 ENSG00000004534|ENST00000266022|RBM6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2586364746094 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 36.861 1 34.513 34.013 35.013 -2.3479 0 0 0 0.11195 1 6523 6523 36.127 12.979 1 11551 975 7286 7289 11825 11825 0.012100613149982564 EESPSERRP 9 Unmodified _EESPSERRP_ 0 0 0 REV__nc|ENSG00000156030|Q6PJG2|MIDEAS REV__nc|ENSG00000156030|Q6PJG2|MIDEAS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7717895507812 2 543.762352 1085.51015 0.20228 0.00010999 -0.49708 -0.00027029 -0.29479 -0.0001603 544.2651562790991 131.84 0.20905 127.2 127.1 127.31 -4.6399 6 5 2 0 0 0 0.70212 1 25996 25996 27.629 21.423 1 619330 + 11552 17240 7287 7290 11826 11826 -0.029184114355075508 EESQLREA 8 Unmodified _EESQLREA_ 0 0 0 REV__nc|ENSG00000130475|O14526-3|FCHO1 REV__nc|ENSG00000130475|O14526-3|FCHO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2529296875 2 481.232896 960.451239 -0.015525 -7.4712E-06 -0.71097 -0.00034214 -0.7265 -0.00034961 481.23355134172544 21.041 0.45567 21.041 20.668 21.124 0 15 12 3 0 0 0 0.69713 1 3482 3482 14.838 0 1 343350 + 11553 16006 7288 7291 11827 11827 -0.030568877298605912 EESRAPPAP 9 Unmodified _EESRAPPAP_ 0 0 0 REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7282409667969 2 477.237981 952.461409 0.34277 0.00016358 -0.51323 -0.00024493 -0.17045 -8.1347E-05 477.23773533590696 20.732 0.84646 19.335 19.072 19.919 -1.3966 42 23 3 0 0 0 0.38188 1 3475 3475 26.884 0 1 6880700 + 11554 15047 7289 7292 11828 11828 -0.01672280004629556 EESRAPPAP 9 Unmodified _EESRAPPAP_ 0 0 0 REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.237981 952.461409 -0.14135 -6.7456E-05 -0.025629 -1.2231E-05 -0.16698 -7.9687E-05 477.2379894110712 19.237 0.65887 19.237 19.066 19.725 0 -0.026478 0.00010639 NaN 26.884 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6715400 + 11555 15047 7289 7292 -0.01672280004629556 EESRAPPAP 9 Unmodified _EESRAPPAP_ 0 0 0 REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.237981 952.461409 -0.25356 -0.00012101 0.12888 6.1505E-05 -0.12469 -5.9505E-05 477.23805953441104 20.604 0.98164 19.219 18.811 19.793 -1.3847 -0.044672 0.00025386 NaN 26.884 42 27 3 NaN NaN NaN NaN 0 NaN NaN 0 5560200 + 11556 15047 7289 7292 -0.01672280004629556 EESSDWFY 8 Unmodified _EESSDWFY_ 0 0 0 nc|ENSG00000198363|Q12797-7|ASPH nc|ENSG00000198363|Q12797-7|ASPH nc|ENSG00000198363|Q12797-7|ASPH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 355.2112121582031 3 354.806545 1061.39781 -0.061854 -2.1946E-05 -1.4124 -0.00050112 -1.4742 -0.00052307 354.8067428395142 76.011 0.66305 76.011 75.681 76.344 0 27 18 2 0 0 0 1.0276 1 14731 14731 0.45834 0.057624 1 2338000 11557 12550 7290 7293 11829 11829 -0.13043685232355529 EESSFRQTV 9 Unmodified _EESSFRQTV_ 0 0 0 REV__ENSG00000138678|ENST00000264409|GPAT3 REV__ENSG00000138678|ENST00000264409|GPAT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2743530273438 2 541.759278 1081.504 0.54317 0.00029427 -0.1865 -0.00010104 0.35668 0.00019323 541.7594042223112 42.601 0.49664 42.601 42.351 42.847 0 19 13 2 0 0 0 0.48644 1 7984 7984 20.454 0 1 717980 + 11558 16479 7291 7294 11830 11830 -0.033489296670495605 EESSRDASSL 10 Unmodified _EESSRDASSL_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;SVIL|p.Q209Rfs*10|1|0.09|ENSG00000197321|chr10:29550799-29550800|GA/-|frameshift_variant;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.262451171875 2 540.743825 1079.4731 0.069884 3.779E-05 -1.5566 -0.00084171 -1.4867 -0.00080392 541.2435403643534 56.985 0.62724 54.091 53.718 54.345 -2.8944 22 17 2 0 0 0 0.80147 1 10888 10888 20.415 0 1 1194300 11559 7353 7292 7295 11831 11831 -0.06346127771939791 EESVEQKL 8 Unmodified _EESVEQKL_ 0 0 0 REV__nc|ENSG00000158691|O43309-2|ZSCAN12 REV__nc|ENSG00000158691|O43309-2|ZSCAN12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23431396484375 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 97.382 1 97.382 96.882 97.882 0 0 0 0 0.2074 1 19084 19084 19.439 1.304 1 + 11560 17343 7293 7296 11832 11832 -0.005428329272717747 EESVEQKL 8 Unmodified _EESVEQKL_ 0 0 0 REV__nc|ENSG00000158691|O43309-2|ZSCAN12 REV__nc|ENSG00000158691|O43309-2|ZSCAN12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24517822265625 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 97.45 1 97.45 96.95 97.95 0 0 0 0 0.2074 1 19097 19097 19.439 1.304 1 + 11561 17343 7293 7296 11833 11833 -0.005428329272717747 EESVEQKL 8 Unmodified _EESVEQKL_ 0 0 0 REV__nc|ENSG00000158691|O43309-2|ZSCAN12 REV__nc|ENSG00000158691|O43309-2|ZSCAN12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24395751953125 2 481.245472 960.476391 0.3191 0.00015356 -0.83892 -0.00040372 -0.51982 -0.00025016 481.2447600690311 100.98 0.5555 96.994 96.789 97.345 -3.9895 23 15 2 0 0 0 8448 1 19471 19471 0.68139 0 1 592860 + 11562 17343 7293 7296 11834 11834 -0.005428329272717747 EESVSRLP 8 Unmodified _EESVSRLP_ 0 0 0 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2403259277344 2 458.740357 915.46616 0.56849 0.00026079 -0.10078 -4.6233E-05 0.46771 0.00021456 458.74032401203067 48.064 0.91057 48.064 47.646 48.556 0 41 25 2 0 0 0 0.31943 1 9100 9100 62.573 20.478 1 1407600 11563 3978 7294 7297 11835 11835 0.005046041381433497 EESVSRLP 8 Unmodified _EESVSRLP_ 0 0 0 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2380676269531 2 458.740357 915.46616 -0.009414 -4.3186E-06 0.41031 0.00018823 0.4009 0.00018391 458.74060170142974 51.134 0.73688 48.089 47.631 48.368 -3.0453 31 20 2 0 0 0 0.70215 1 9413 9413 29.082 9.8246 1 1038300 11564 3978 7294 7297 11836 11836 0.005046041381433497 EESVTQRL 8 Unmodified _EESVTQRL_ 0 0 0 REV__GREM2|p.T75M|1|0.42|ENSG00000180875|chr1:240493252-240493252|G/A|missense_variant REV__GREM2|p.T75M|1|0.42|ENSG00000180875|chr1:240493252-240493252|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24169921875 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 80.746 1 80.746 80.246 81.246 0 0 0 0 0.2074 1 15723 15723 19.439 5.9311 1 + 11565 18700 7295 7298 11837 11837 0.005799891668516466 EESVTQRL 8 Unmodified _EESVTQRL_ 0 0 0 REV__GREM2|p.T75M|1|0.42|ENSG00000180875|chr1:240493252-240493252|G/A|missense_variant REV__GREM2|p.T75M|1|0.42|ENSG00000180875|chr1:240493252-240493252|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2530517578125 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 86.614 1 82.663 82.163 83.163 -3.9503 0 0 0 0.18898 1 16489 16489 28.487 3.0875 1 + 11566 18700 7295 7298 11838 11838 0.005799891668516466 EETAFLSFF 9 Unmodified _EETAFLSFF_ 0 0 0 ENST00000528042.1_1_11:57505416-57505545:+|nuORF ENST00000528042.1_1_11:57505416-57505545:+|nuORF ENST00000528042.1_1_11:57505416-57505545:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 364.18621826171875 3 364.174569 1089.50188 NaN NaN NaN NaN NaN NaN NaN 76.137 1 76.137 75.637 76.637 0 0 0 0 0.23508 1 14796 14796 8.7454 0.58988 1 11567 10930 7296 7299 11839 11839 -0.03929358404843697 EETAHSIK 8 Unmodified _EETAHSIK_ 0 0 0 REV__ENSG00000150527|ENST00000640607|MIA2 REV__ENSG00000150527|ENST00000640607|MIA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2337341308594 2 457.732532 913.45051 0.33897 0.00015516 -0.16962 -7.7641E-05 0.16935 7.7515E-05 457.73241257039155 37.383 0.7933 37.383 36.957 37.751 0 63 22 4 0 0 0 0.70613 1 6830 6830 13.508 0.46542 1 19285000 + 11568 17033 7297 7300 11840 11840 -0.009676823789050104 EETAKENNYY 10 Unmodified _EETAKENNYY_ 0 0 0 REV__tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1 REV__tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.773681640625 2 630.772582 1259.53061 NaN NaN NaN NaN NaN NaN NaN 101.35 1 97.049 96.549 97.549 -4.297 0 0 0 0.22588 1 19393 19393 3.9444 0.3479 1 + 11569 25166 7298 7301 11841 11841 -0.08877285566359205 EETAKQILY 9 Unmodified _EETAKQILY_ 0 0 0 ENSG00000128849|ENST00000281282|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7899780273438 2 547.790047 1093.56554 -0.30332 -0.00016615 0.35707 0.0001956 0.053748 2.9443E-05 547.790167595461 108.73 0.69701 104.36 104.05 104.75 -4.3776 46 19 3 0 0 0 0.16619 1 21444 21444 41.84 5.7126 1 3451000 11570 3545 7299 7302 11842 11842 0.02250002032269549 EETALITRPG 10 Unmodified _EETALITRPG_ 0 0 0 DDAH1|p.N229Tfs*24|1|0.45|ENSG00000153904|chr1:85324797-85324797|G/-|frameshift_variant;ENSG00000153904|ENST00000284031|DDAH1 DDAH1|p.N229Tfs*24|1|0.45|ENSG00000153904|chr1:85324797-85324797|G/-|frameshift_variant DDAH1|p.N229Tfs*24|1|0.45|ENSG00000153904|chr1:85324797-85324797|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79345703125 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 42.312 1 42.312 41.812 42.812 0 0 0 0 0.22588 1 7912 7912 10.074 1.4806 1 11571 796 7300 7303 11843 11843 0.032325202637593975 EETALITRPG 10 Unmodified _EETALITRPG_ 0 0 0 DDAH1|p.N229Tfs*24|1|0.45|ENSG00000153904|chr1:85324797-85324797|G/-|frameshift_variant;ENSG00000153904|ENST00000284031|DDAH1 DDAH1|p.N229Tfs*24|1|0.45|ENSG00000153904|chr1:85324797-85324797|G/-|frameshift_variant DDAH1|p.N229Tfs*24|1|0.45|ENSG00000153904|chr1:85324797-85324797|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7811279296875 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 117.32 1 112.96 112.46 113.46 -4.3585 0 0 0 2.8426 1 22582 22582 0.20733 0.14346 1 11572 796 7300 7303 11844 11844 0.032325202637593975 EETALITRPG 10 Unmodified _EETALITRPG_ 0 0 0 DDAH1|p.N229Tfs*24|1|0.45|ENSG00000153904|chr1:85324797-85324797|G/-|frameshift_variant;ENSG00000153904|ENST00000284031|DDAH1 DDAH1|p.N229Tfs*24|1|0.45|ENSG00000153904|chr1:85324797-85324797|G/-|frameshift_variant DDAH1|p.N229Tfs*24|1|0.45|ENSG00000153904|chr1:85324797-85324797|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7811279296875 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 117.34 1 112.99 112.49 113.49 -4.3585 0 0 0 0.22576 1 22586 22586 14.838 0.93222 1 11573 796 7300 7303 11845 11845 0.032325202637593975 EETALSRPPS 10 Unmodified _EETALSRPPS_ 0 0 0 REV__ENSG00000110274|ENST00000278935|CEP164 REV__ENSG00000110274|ENST00000278935|CEP164 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7733764648438 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 112.45 1 112.45 111.95 112.95 0 0 0 0 0.17567 1 22123 22123 32.786 11.039 1 + 11574 15196 7301 7304 11846 11846 -0.004043566329528403 EETAQAIASY 10 Unmodified _EETAQAIASY_ 0 0 0 ENSG00000131446|ENST00000307826|MGAT1 ENSG00000131446|ENST00000307826|MGAT1 ENSG00000131446|ENST00000307826|MGAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7877807617188 2 541.753661 1081.49277 0.55647 0.00030147 -0.10613 -5.7496E-05 0.45034 0.00024397 541.7535479225426 116.92 1.096 112.56 111.99 113.09 -4.3585 102 30 5 0 0 0 0.57735 1 22511 22511 20.454 5.6154 1 34110000 11575 3676 7302 7305 11847 11847 -0.044717517611843505 EETARIGPG 9 Unmodified _EETARIGPG_ 0 0 0 nc|ENSG00000133134|Q9BXY8-2|BEX2 nc|ENSG00000133134|Q9BXY8-2|BEX2 nc|ENSG00000133134|Q9BXY8-2|BEX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2398986816406 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 59.225 1 56.314 55.814 56.814 -2.9105 0 0 0 0.13613 1 11382 11382 32.305 3.8186 1 11576 12331 7303 7306 11848 11848 -0.005682800045974545 EETATTVVA 9 Unmodified _EETATTVVA_ 0 0 0 ENST00000449943.5_1_11:64895819-64896227:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1 ENST00000449943.5_1_11:64895819-64896227:-|nuORF ENST00000449943.5_1_11:64895819-64896227:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24798583984375 2 460.732197 919.449842 0.36647 0.00016884 -0.066352 -3.0571E-05 0.30012 0.00013827 460.7320687751678 40.002 0.67346 40.002 39.789 40.462 0 34 18 2 0 0 0 0.13419 1 7466 7466 60.39 31.903 1 3271400 11577 5320 7304 7307 11849 11849 -0.013105218186069578 EETATTVVA 9 Unmodified _EETATTVVA_ 0 0 0 ENST00000449943.5_1_11:64895819-64896227:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1 ENST00000449943.5_1_11:64895819-64896227:-|nuORF ENST00000449943.5_1_11:64895819-64896227:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2475891113281 2 460.732197 919.449842 -0.21247 -9.7892E-05 0.37711 0.00017375 0.16464 7.5856E-05 460.7323064154921 42.509 1.0002 39.79 39.52 40.52 -2.7191 45 27 2 0 0 0 0.064469 1 8009 8009 77.984 41.94 1 8589500 11578 5320 7304 7307 11850 11850 -0.013105218186069578 EETATTVVA 9 Unmodified _EETATTVVA_ 0 0 0 ENST00000449943.5_1_11:64895819-64896227:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1 ENST00000449943.5_1_11:64895819-64896227:-|nuORF ENST00000449943.5_1_11:64895819-64896227:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.248291015625 2 460.732197 919.449842 -0.10093 -4.6503E-05 0.28053 0.00012925 0.1796 8.2748E-05 460.73223464019526 42.532 1.119 39.881 39.607 40.726 -2.651 53 31 2 0 0 0 0.064469 1 7697 7697 77.984 33.577 1 5062400 11579 5320 7304 7307 11851 11851 -0.013105218186069578 EETATTVVA 9 Unmodified _EETATTVVA_ 0 0 0 ENST00000449943.5_1_11:64895819-64896227:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1 ENST00000449943.5_1_11:64895819-64896227:-|nuORF ENST00000449943.5_1_11:64895819-64896227:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2478332519531 2 460.732197 919.449842 -0.0086108 -3.9673E-06 0.43782 0.00020172 0.42921 0.00019775 460.73222169079133 42.557 0.90874 39.951 39.65 40.558 -2.606 46 25 2 0 0 0 0.13419 1 7738 7738 60.39 24.345 1 3626200 11580 5320 7304 7307 11852 11852 -0.013105218186069578 EETCLCPC 8 Unmodified _EETCLCPC_ 0 0 0 REV__ENSG00000188730|ENST00000340652|VWC2 REV__ENSG00000188730|ENST00000340652|VWC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.1217041015625 2 449.161182 896.307811 0.27024 0.00012138 1.7984 0.00080778 2.0686 0.00092916 449.1615765833088 36.267 0.92557 36.267 35.962 36.887 0 68 25 5 0 0 0 0.73426 1 6666 6666 9.3474 9.3474 1 6616700 + 11581 19165 7305 7308 11853 11853 -0.1444909742846221 EETCLCPC 8 Unmodified _EETCLCPC_ 0 0 0 REV__ENSG00000188730|ENST00000340652|VWC2 REV__ENSG00000188730|ENST00000340652|VWC2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 449.161182 896.307811 0.27024 0.00012138 1.7984 0.00080778 2.0686 0.00092916 449.1615765833088 36.267 0.92557 36.267 35.962 36.887 0 0.076315 8.7911E-05 NaN 9.3474 68 25 5 NaN NaN NaN NaN 0 NaN NaN 0 6616700 + 11582 19165 7305 7308 -0.1444909742846221 EETCLCPC 8 Unmodified _EETCLCPC_ 0 0 0 REV__ENSG00000188730|ENST00000340652|VWC2 REV__ENSG00000188730|ENST00000340652|VWC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 449.161182 896.307811 -0.43054 -0.00019338 1.9125 0.00085902 1.482 0.00066563 449.16191056456677 38.677 0.52155 36.128 35.91 36.431 -2.5491 -0.062506 0.0001904 NaN 9.3474 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2544900 + 11583 19165 7305 7308 -0.1444909742846221 EETCLCPC 8 Unmodified _EETCLCPC_ 0 0 0 REV__ENSG00000188730|ENST00000340652|VWC2 REV__ENSG00000188730|ENST00000340652|VWC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.161182 896.307811 -0.0022093 -9.9234E-07 1.4567 0.0006543 1.4545 0.00065331 449.1617481553656 38.619 0.87523 36.177 36.018 36.893 -2.4419 -0.013809 -0.00021904 NaN 9.3474 35 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1811600 + 11584 19165 7305 7308 -0.1444909742846221 EETDFPATTA 10 Unmodified _EETDFPATTA_ 0 0 0 REV__ENST00000254846.9_1_17:7748945-7749936:+|nuORF REV__ENST00000254846.9_1_17:7748945-7749936:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2762451171875 2 541.237844 1080.46113 0.91109 0.00049312 0.4064 0.00021996 1.3175 0.00071308 541.2379658260822 22.79 0.51523 21.237 20.991 21.507 -1.5532 23 14 2 0 0 0 0.30678 1 3922 3922 52.268 16.141 1 937090 + 11585 20124 7306 7309 11854 11854 -0.07587744515149097 EETEENSHC 9 Unmodified _EETEENSHC_ 0 0 0 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 359.5103759765625 3 359.797832 1076.37167 -0.22142 -7.9668E-05 1.0787 0.00038811 0.85726 0.00030844 359.79924515525596 31.238 0.45414 31.238 31.004 31.458 0 33 12 4 0 0 0 0.39231 1 5625 5625 4.7159 0 1 1893400 11586 3869 7307 7310 11855 11855 -0.16346322466142738 EETEFHGL 8 Unmodified _EETEFHGL_ 0 0 0 nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2;nc|ENSG00000170854|Q8IUF8-3|RIOX2 nc|ENSG00000170854|Q8IUF8-4|RIOX2 nc|ENSG00000170854|Q8IUF8-4|RIOX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2492980957031 2 481.216714 960.418876 0.23522 0.00011319 0.2019 9.7157E-05 0.43712 0.00021035 481.2168174491564 76.35 0.63494 76.35 76.131 76.766 0 27 17 2 0 0 0 0.1249 1 14861 14861 78.445 14.882 1 1980000 11587 6104 7308 7311 11856 11856 -0.06291675132843011 EETEFHGL 8 Unmodified _EETEFHGL_ 0 0 0 nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2;nc|ENSG00000170854|Q8IUF8-3|RIOX2 nc|ENSG00000170854|Q8IUF8-4|RIOX2 nc|ENSG00000170854|Q8IUF8-4|RIOX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2494812011719 2 481.216714 960.418876 0.071466 3.4391E-05 0.33641 0.00016189 0.40788 0.00019628 481.2168309097733 79.818 0.74161 76.307 75.979 76.72 -3.5102 40 20 3 0 0 0 0.2945 1 15588 15588 49.669 9.7116 1 3895900 11588 6104 7308 7311 11857 11857 -0.06291675132843011 EETEFHGL 8 Unmodified _EETEFHGL_ 0 0 0 nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2;nc|ENSG00000170854|Q8IUF8-3|RIOX2 nc|ENSG00000170854|Q8IUF8-4|RIOX2 nc|ENSG00000170854|Q8IUF8-4|RIOX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23333740234375 2 481.216714 960.418876 -0.017887 -8.6075E-06 0.47401 0.0002281 0.45612 0.00021949 481.21698807755905 80.152 0.69529 76.347 75.969 76.664 -3.8048 34 19 2 0 0 0 0.25036 1 15253 15253 40.449 15.775 1 2214700 11589 6104 7308 7311 11858 11858 -0.06291675132843011 EETEFHGL 8 Unmodified _EETEFHGL_ 0 0 0 nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2;nc|ENSG00000170854|Q8IUF8-3|RIOX2 nc|ENSG00000170854|Q8IUF8-4|RIOX2 nc|ENSG00000170854|Q8IUF8-4|RIOX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78363037109375 2 481.216714 960.418876 -0.20045 -9.646E-05 0.59575 0.00028669 0.3953 0.00019023 481.21699116438657 79.981 0.8979 76.305 75.904 76.802 -3.676 35 25 2 0 0 0 0.18159 1 15264 15264 59.795 19.347 1 2311000 11590 6104 7308 7311 11859 11859 -0.06291675132843011 EETEKHIA 8 Unmodified _EETEKHIA_ 0 0 0 tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1 tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1 tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7378234863281 2 478.737814 955.461075 0.17831 8.5362E-05 -0.76144 -0.00036453 -0.58314 -0.00027917 478.737667855193 32.366 0.42997 30.135 29.936 30.366 -2.2305 19 11 2 0 0 0 0.64227 1 5928 5928 19.439 2.4967 1 1022500 11591 26067 7309 7312 11860 11860 -0.01843699724486214 EETERRVY 8 Unmodified _EETERRVY_ 0 0 0 REV__nc|ENSG00000158055|Q8TE85-4|GRHL3 REV__nc|ENSG00000158055|Q8TE85-4|GRHL3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.268798828125 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 20.417 1 20.417 19.917 20.917 0 0 0 0 0.21452 1 3378 3378 13.508 3.3245 1 + 11592 17320 7310 7313 11861 11861 -0.017052234301445424 EETERRVY 8 Unmodified _EETERRVY_ 0 0 0 REV__nc|ENSG00000158055|Q8TE85-4|GRHL3 REV__nc|ENSG00000158055|Q8TE85-4|GRHL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26806640625 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 32.604 1 30.456 29.956 30.956 -2.1483 0 0 0 0.21486 1 5654 5654 10.183 0 1 + 11593 17320 7310 7313 11862 11862 -0.017052234301445424 EETGKIFKK 9 Unmodified _EETGKIFKK_ 0 0 0 ENST00000473864.1_1_3:156528118-156528448:-|nuORF;ENST00000414718.1_1_20:12360810-12361446:+|nuORF;PA2G4|p.T200Pfs*58|1|0.29|ENSG00000170515|chr12:56109899-56109899|A/-|frameshift_variant;nc|ENSG00000170515|Q9UQ80-2|PA2G4;PA2G4|p.K373Efs*19|1|0.43|ENSG00000170515|chr12:56111517-56111518|-/A|frameshift_variant;ENSG00000170515|ENST00000303305|PA2G4 ENST00000473864.1_1_3:156528118-156528448:-|nuORF ENST00000473864.1_1_3:156528118-156528448:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.5060119628906 3 360.541363 1078.60226 -0.2946 -0.00010621 1.6097 0.00058037 1.3151 0.00047415 360.5417840515877 18.307 0.24215 18.307 18.126 18.368 0 10 6 2 0 0 0 0.58921 1 2916 2916 0.20686 0 1 718270 11594 6076 7311 7314 11863 11863 0.06610298648797652 EETGTLLTP 9 Unmodified _EETGTLLTP_ 0 0 0 ENST00000424946.1_1_12:105322435-105351963:-|nuORF;ENST00000432951.1_1_12:105325484-105351963:-|nuORF ENST00000424946.1_1_12:105322435-105351963:-|nuORF ENST00000424946.1_1_12:105322435-105351963:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.249755859375 2 480.747847 959.481142 0.056065 2.6953E-05 0.11531 5.5434E-05 0.17137 8.2387E-05 480.7478231841345 94.61 0.73708 90.619 90.212 90.949 -3.9907 26 20 2 0 0 0 0.25702 1 18577 18577 34.102 5.6156 1 3530500 11595 9709 7312 7315 11864 11864 -0.00021948784524283838 EETGTSAADLT 11 Unmodified _EETGTSAADLT_ 0 0 0 ENST00000474513.6_1_3:63850583-63884133:+|nuORF ENST00000474513.6_1_3:63850583-63884133:+|nuORF ENST00000474513.6_1_3:63850583-63884133:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.79248046875 2 547.746033 1093.47751 0.21831 0.00011958 2.4135 0.001322 2.6318 0.0014416 548.2495818711584 115.62 0.6521 111.15 110.84 111.5 -4.4726 27 18 2 0 0 0 0.68099 1 22844 22844 13.042 0.51092 1 2299800 11596 10260 7313 7316 11865 11865 -0.0654866334905364 EETIASLKA 9 Unmodified _EETIASLKA_ 0 0 0 nc|ENSG00000132514|Q8IUN9-3|CLEC10A;ENSG00000132514|ENST00000416562|CLEC10A;nc|ENSG00000132514|Q8IUN9-2|CLEC10A;nc|ENSG00000132514|Q8IUN9|CLEC10A nc|ENSG00000132514|Q8IUN9-3|CLEC10A nc|ENSG00000132514|Q8IUN9-3|CLEC10A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24945068359375 2 481.263665 960.512776 NaN NaN NaN NaN NaN NaN NaN 90.766 1 90.766 90.266 91.266 0 0 0 0 0.1124 1 17734 17734 36.044 7.871 1 11597 3737 7314 7317 11866 11866 0.030940439694290944 EETIDPVL 8 Unmodified _EETIDPVL_ 0 0 0 ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant;DNAH11|p.A4348Tfs*8|1|0.06|ENSG00000105877|chr7:21894990-21894991|-/CACTTTA|frameshift_variant ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2391357421875 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 79.836 1 76.16 75.66 76.66 -3.676 0 0 0 0.19492 1 15215 15215 26.341 0 1 11598 860 7315 7318 11867 11867 -0.0009733381323258072 EETIGIVEA 9 Unmodified _EETIGIVEA_ 0 0 0 nc|ENSG00000104915|O60499-2|STX10;ENSG00000104915|ENST00000587230|STX10 nc|ENSG00000104915|O60499-2|STX10 nc|ENSG00000104915|O60499-2|STX10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25006103515625 2 480.747847 959.481142 0.24744 0.00011896 0.27438 0.00013191 0.52182 0.00025087 480.74774127303255 99.565 0.66653 99.565 99.267 99.934 0 36 18 3 0 0 0 0.054622 2 19554 19554;19556 67.344 16.489 1 2779300 11599 2268 7316 7319 11868;11869 11868 -0.00021948784512915154 EETIGIVEA 9 Unmodified _EETIGIVEA_ 0 0 0 nc|ENSG00000104915|O60499-2|STX10;ENSG00000104915|ENST00000587230|STX10 nc|ENSG00000104915|O60499-2|STX10 nc|ENSG00000104915|O60499-2|STX10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25042724609375 2 480.747847 959.481142 -0.10103 -4.857E-05 0.45625 0.00021934 0.35522 0.00017077 480.7478901596761 103.77 0.67585 99.55 99.181 99.857 -4.2183 31 19 2 0 0 0 0.042631 1 20384 20384 74.423 10.186 1 2431400 11600 2268 7316 7319 11870 11870 -0.00021948784512915154 EETIGIVEA 9 Unmodified _EETIGIVEA_ 0 0 0 nc|ENSG00000104915|O60499-2|STX10;ENSG00000104915|ENST00000587230|STX10 nc|ENSG00000104915|O60499-2|STX10 nc|ENSG00000104915|O60499-2|STX10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2498779296875 2 480.747847 959.481142 0.21946 0.0001055 0.28773 0.00013832 0.50719 0.00024383 480.7476723402374 103.94 0.69 99.589 99.249 99.939 -4.346 31 19 2 0 0 0 0.052953 4 19897 19897;19942;19949;19952 54.774 29.373 1 2357400 11601 2268 7316 7319 11871;11872;11873;11874 11871 -0.00021948784512915154 EETIGIVEA 9 Unmodified _EETIGIVEA_ 0 0 0 nc|ENSG00000104915|O60499-2|STX10;ENSG00000104915|ENST00000587230|STX10 nc|ENSG00000104915|O60499-2|STX10 nc|ENSG00000104915|O60499-2|STX10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2405090332031 2 480.747847 959.481142 0.59569 0.00028638 -0.27611 -0.00013274 0.31958 0.00015364 480.7475225357504 103.8 0.80873 99.743 99.174 99.983 -4.0543 42 22 3 0 0 0 0.026587 2 19936 19936;19957 85.357 18.013 1 2711200 11602 2268 7316 7319 11875;11876 11875 -0.00021948784512915154 EETIYIYATT 10 Unmodified _EETIYIYATT_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2911376953125 2 602.292619 1202.57069 NaN NaN NaN NaN NaN NaN NaN 98.115 1 98.115 97.615 98.615 0 0 0 0 2.8426 1 19229 19229 0.013265 0 1 + 11603 23644 7317 7320 11877 11877 -0.02249738895829978 EETKAQFYA 9 Unmodified _EETKAQFYA_ 0 0 0 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7899780273438 2 543.758746 1085.50294 NaN NaN NaN NaN NaN NaN NaN 50.273 1 47.228 46.728 47.728 -3.0453 0 0 0 0.14843 1 9206 9206 30.637 11.38 1 11604 4350 7318 7321 11878 11878 -0.03639144035969366 EETKENEGF 9 Unmodified _EETKENEGF_ 0 0 0 ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2635498046875 2 541.735468 1081.45638 0.0085285 4.6202E-06 0.43766 0.0002371 0.44619 0.00024172 541.735541976337 79.295 0.63599 75.619 75.197 75.833 -3.676 19 13 2 0 0 0 0.79204 1 15056 15056 16.942 3.4344 1 1891200 11605 3379 7319 7322 11879 11879 -0.08108628657896588 EETKKDYE 8 Unmodified _EETKKDYE_ 0 0 0 nc|ENSG00000138709|Q659C4-2|LARP1B;ENSG00000138709|ENST00000326639|LARP1B;nc|ENSG00000138709|Q659C4-7|LARP1B;ENST00000506199.5_1_4:129100626-129141527:+|nuORF;nc|ENSG00000138709|Q659C4-6|LARP1B;ENST00000503725.1_1_4:129100626-129141527:+|nuORF;nc|ENSG00000138709|Q659C4-5|LARP1B;ENST00000507259.5_1_4:129099587-129143542:+|nuORF nc|ENSG00000138709|Q659C4-2|LARP1B nc|ENSG00000138709|Q659C4-2|LARP1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2645874023438 2 521.240386 1040.46622 0.24377 0.00012706 0.15721 8.1944E-05 0.40098 0.00020901 521.2402350677922 29.577 0.65478 29.577 29.159 29.814 0 41 18 3 0 0 0 0.73936 1 5266 5266 8.5933 0 1 4119600 11606 4204 7320 7323 11880 11880 -0.05239440652508165 EETLFEKSL 9 Unmodified _EETLFEKSL_ 0 0 0 REV__ENST00000532885.5_1_11:64128013-64135652:+|nuORF REV__ENST00000532885.5_1_11:64128013-64135652:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7931518554688 2 548.282054 1094.54956 -0.12224 -6.7022E-05 -1.8841 -0.001033 -2.0063 -0.0011 548.2811686593161 80.751 1.2927 77.063 76.652 77.945 -3.6879 69 36 3 0 0 0 0.74655 1 15528 15528 15.847 9.6414 1 7630200 + 11607 17486 7321 7324 11881 11881 0.006062957953417936 EETLLDQSF 9 Unmodified _EETLLDQSF_ 0 0 0 ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2745971679688 2 541.256037 1080.49752 0.3031 0.00016406 -0.022847 -1.2366E-05 0.28026 0.00015169 541.2559666850333 134.09 0.79181 134.09 133.59 134.39 0 39 22 2 0 0 0 2.5954E-06 3 26502 26471;26502;26505 96.285 56.67 1 13127000 11608 1509 7322 7325 11882;11883;11884 11883 -0.039508676184368596 EETLLDQSF 9 Unmodified _EETLLDQSF_ 0 0 0 ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.274169921875 2 541.256037 1080.49752 0.23997 0.00012988 0.064758 3.505E-05 0.30473 0.00016494 541.2560482657905 138.83 0.95186 134.19 133.74 134.69 -4.6439 63 26 3 0 0 0 0.2932 1 27501 27501 24.882 21.289 1 12317000 11609 1509 7322 7325 11885 11885 -0.039508676184368596 EETLLDQSF 9 Unmodified _EETLLDQSF_ 0 0 0 ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.275390625 2 541.256037 1080.49752 0.13628 7.3764E-05 0.23191 0.00012552 0.36819 0.00019929 541.2561401576552 139.15 0.89375 134.2 133.78 134.67 -4.952 66 24 4 0 0 0 0.22334 1 26709 26709 36.044 17.909 1 11545000 11610 1509 7322 7325 11886 11886 -0.039508676184368596 EETLLDQSF 9 Unmodified _EETLLDQSF_ 0 0 0 ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2637939453125 2 541.256037 1080.49752 0.33643 0.0001821 0.00060509 3.2751E-07 0.33704 0.00018242 541.2560782566262 139.07 1.1608 134.22 133.68 134.84 -4.8492 63 32 3 0 0 0 0.085258 2 26755 26755;26921 60.39 30.165 1 10515000 11611 1509 7322 7325 11887;11888 11887 -0.039508676184368596 EETLNVLLY 9 Unmodified _EETLNVLLY_ 0 0 0 nc|ENSG00000109079|Q13829-2|TNFAIP1;ENSG00000109079|ENST00000226225|TNFAIP1 nc|ENSG00000109079|Q13829-2|TNFAIP1 nc|ENSG00000109079|Q13829-2|TNFAIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7757568359375 2 547.292422 1092.57029 0.3232 0.00017688 -0.25794 -0.00014117 0.065262 3.5718E-05 547.2921257014316 120.7 0.53427 120.7 120.35 120.89 0 40 14 4 0 0 0 0.30833 1 23758 23758 4.7159 0 1 5223600 11612 2515 7323 7326 11889 11889 0.0277088617501704 EETMDLQRG 9 Unmodified _EETMDLQRG_ 0 0 0 REV__ENSG00000106948|ENST00000374088|AKNA REV__ENSG00000106948|ENST00000374088|AKNA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 3 360.165968 1077.47607 NaN NaN NaN NaN NaN NaN NaN 83.996 1 83.996 83.496 84.496 0 0 0 0 0.23508 1 16375 16375 4.897 2.1618 1 + 11613 15070 7324 7327 11890 11890 -0.059565759187762524 EETNRLYAA 9 Unmodified _EETNRLYAA_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2870483398438 2 533.76182 1065.50909 0.22819 0.0001218 -0.076155 -4.0649E-05 0.15204 8.1152E-05 533.7617276374871 38.775 0.52866 38.775 38.495 39.024 0 38 14 3 0 0 0 0.11519 1 7214 7214 70.332 39.064 1 5382900 11614 5160 7325 7328 11891 11891 -0.021046258044407296 EETNRLYAA 9 Unmodified _EETNRLYAA_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.26953125 2 533.76182 1065.50909 -0.10069 -5.3746E-05 0.41536 0.0002217 0.31467 0.00016796 533.7620032735178 41.43 0.61802 38.795 38.468 39.086 -2.6348 47 17 4 0 0 0 0.11519 1 7717 7717 53.404 31.867 1 5572700 11615 5160 7325 7328 11892 11892 -0.021046258044407296 EETNRLYAA 9 Unmodified _EETNRLYAA_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2859497070312 2 533.76182 1065.50909 0.3104 0.00016568 -0.15645 -8.3505E-05 0.15396 8.2176E-05 533.7617543079338 41.323 0.73151 38.783 38.348 39.08 -2.5398 46 20 4 0 0 0 0.11519 1 7401 7401 70.332 46.542 1 4807300 11616 5160 7325 7328 11893 11893 -0.021046258044407296 EETNRLYAA 9 Unmodified _EETNRLYAA_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2702026367188 2 533.76182 1065.50909 0.11193 5.9743E-05 0.1025 5.471E-05 0.21443 0.00011445 533.7617583590144 41.285 0.6684 38.795 38.496 39.165 -2.4896 43 18 3 0 0 0 0.23009 1 7432 7432 55.503 27.874 1 4268700 11617 5160 7325 7328 11894 11894 -0.021046258044407296 EETNVTAQA 9 Unmodified _EETNVTAQA_ 0 0 0 nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8 nc|ENSG00000133704|O15397-2|IPO8 nc|ENSG00000133704|O15397-2|IPO8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78717041015625 2 481.724904 961.435254 0.012535 6.0385E-06 -2.3007 -0.0011083 -2.2882 -0.0011023 481.72387297426076 23.87 0.3824 22.335 22.159 22.542 -1.5342 16 10 2 0 0 0 0.28819 1 3856 3856 32.305 14.159 1 639870 11618 3813 7326 7329 11895 11895 -0.047005939667656094 EETNVTAQA 9 Unmodified _EETNVTAQA_ 0 0 0 nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8 nc|ENSG00000133704|O15397-2|IPO8 nc|ENSG00000133704|O15397-2|IPO8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7875061035156 2 481.724904 961.435254 NaN NaN NaN NaN NaN NaN NaN 23.968 1 22.18 21.68 22.68 -1.7886 0 0 0 0.22621 1 3880 3880 15.847 1.2655 1 11619 3813 7326 7329 11896 11896 -0.047005939667656094 EETNYKSLRY 10 Unmodified _EETNYKSLRY_ 0 0 0 REV__ENSG00000154124|ENST00000284274|OTULIN REV__ENSG00000154124|ENST00000284274|OTULIN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 434.8899841308594 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 39.053 1 36.611 36.111 37.111 -2.4419 0 0 0 0.22588 1 6965 6965 6.1918 1.4759 1 + 11620 17167 7327 7330 11897 11897 -0.013567270243811436 EETPLEVVK 9 Unmodified _EETPLEVVK_ 0 0 0 REV__ENST00000593859.5_1_19:51323389-51327022:-|nuORF REV__ENST00000593859.5_1_19:51323389-51327022:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2799072265625 2 522.284597 1042.55464 NaN NaN NaN NaN NaN NaN NaN 52.003 1 48.937 48.437 49.437 -3.0657 0 0 0 0.23508 1 9558 9558 12.532 0 1 + 11621 17964 7328 7331 11898 11898 0.03506599657953302 EETPLSAPA 9 Unmodified _EETPLSAPA_ 0 0 0 REV__nc|ENSG00000165671|Q96L73-2|NSD1 REV__nc|ENSG00000165671|Q96L73-2|NSD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2272033691406 2 457.726915 913.439277 -0.058231 -2.6654E-05 0.1864 8.5321E-05 0.12817 5.8667E-05 457.72684184720964 46.648 0.42309 43.783 43.588 44.011 -2.8653 16 11 2 0 0 0 0.19188 1 8489 8489 38.151 9.6643 1 607970 + 11622 17793 7329 7332 11899 11899 -0.02090504473051169 EETPSILRV 9 Unmodified _EETPSILRV_ 0 0 0 ENSG00000107560|ENST00000355624|RAB11FIP2;nc|ENSG00000107560|Q7L804-2|RAB11FIP2 ENSG00000107560|ENST00000355624|RAB11FIP2 ENSG00000107560|ENST00000355624|RAB11FIP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2799682617188 2 522.290214 1042.56587 0.61186 0.00031957 -0.89718 -0.00046859 -0.28532 -0.00014902 522.2899251160571 113.58 0.45507 109.31 108.99 109.44 -4.2725 24 12 3 0 0 0 0.66316 1 21856 21856 8.7454 2.3913 1 611820 11623 2428 7330 7333 11900 11900 0.04629421752088092 EETRKDFRY 9 Unmodified _EETRKDFRY_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7512817382812 2 622.306926 1242.5993 0.83548 0.00051993 -0.37635 -0.0002342 0.45914 0.00028572 622.3066725004877 50.277 0.49442 47.396 47.114 47.609 -2.8811 19 13 2 0 0 0 0.35443 1 9529 9529 28.487 11.374 1 770300 11624 5053 7331 7334 11901 11901 -0.012295764760210659 EETRKDFRY 9 Unmodified _EETRKDFRY_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7579345703125 2 622.306926 1242.5993 0.27611 0.00017183 0.026086 1.6234E-05 0.3022 0.00018806 622.3068438319623 50.487 0.34103 47.442 47.224 47.565 -3.0453 14 9 2 0 0 0 0.74655 1 9213 9213 21.747 9.2151 1 1138700 11625 5053 7331 7334 11902 11902 -0.012295764760210659 EETRKDFRY 9 Unmodified _EETRKDFRY_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7696533203125 2 622.306926 1242.5993 0.12781 7.954E-05 0.24085 0.00014988 0.36867 0.00022942 622.307035949769 50.393 0.44281 47.386 47.142 47.585 -3.0068 17 12 2 0 0 0 0.28819 1 9262 9262 32.305 10.559 1 945960 11626 5053 7331 7334 11903 11903 -0.012295764760210659 EETRKIPVP 9 Unmodified _EETRKIPVP_ 0 0 0 ENSG00000115946|ENST00000263657|PNO1 ENSG00000115946|ENST00000263657|PNO1 ENSG00000115946|ENST00000263657|PNO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5530700683594 3 356.873113 1067.59751 -0.29649 -0.00010581 0.37397 0.00013346 0.077476 2.7649E-05 356.87320412158147 54.016 1.589 54.016 53.213 54.802 0 129 44 4 0 0 0 0.25976 2 10349 10349;10400 17.113 16.848 1 6565900 11627 2895 7332 7335 11904;11905 11904 0.06641414506020737 EETRKIPVP 9 Unmodified _EETRKIPVP_ 0 0 0 ENSG00000115946|ENST00000263657|PNO1 ENSG00000115946|ENST00000263657|PNO1 ENSG00000115946|ENST00000263657|PNO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5534973144531 3 356.873113 1067.59751 0.074326 2.6525E-05 -0.092653 -3.3065E-05 -0.018326 -6.5402E-06 356.87304970685875 56.917 1.8658 53.727 52.846 54.712 -3.1895 122 52 3 0 0 0 0.60489 1 10698 10698 2.732 2.732 1 6180400 11628 2895 7332 7335 11906 11906 0.06641414506020737 EETRKIPVP 9 Unmodified _EETRKIPVP_ 0 0 0 ENSG00000115946|ENST00000263657|PNO1 ENSG00000115946|ENST00000263657|PNO1 ENSG00000115946|ENST00000263657|PNO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.55322265625 3 356.873113 1067.59751 -0.64691 -0.00023086 0.81763 0.00029179 0.17072 6.0926E-05 356.8733411591228 56.929 1.8741 53.753 52.971 54.845 -3.1761 128 52 3 0 0 0 0.45972 1 10683 10683 8.1555 8.0823 1 6391800 11629 2895 7332 7335 11907 11907 0.06641414506020737 EETRRNFEA 9 Unmodified _EETRRNFEA_ 0 0 0 nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF nc|ENSG00000133706|Q9P2J5-2|LARS1 nc|ENSG00000133706|Q9P2J5-2|LARS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32958984375 2 576.275626 1150.5367 0.50509 0.00029107 -0.30585 -0.00017625 0.19924 0.00011482 576.2754687896752 21.577 0.53571 20.103 19.841 20.377 -1.4742 42 14 4 0 0 0 0.545 1 3684 3684 23.79 3.3362 1 13401000 11630 3814 7333 7336 11908 11908 -0.032547225441931005 EETRRNFEA 9 Unmodified _EETRRNFEA_ 0 0 0 nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF nc|ENSG00000133706|Q9P2J5-2|LARS1 nc|ENSG00000133706|Q9P2J5-2|LARS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3217163085938 2 576.275626 1150.5367 -0.6593 -0.00037994 0.89755 0.00051723 0.23825 0.0001373 576.2761420437034 21.757 0.68096 20.036 19.779 20.46 -1.7211 54 19 4 0 0 0 0.27332 1 3430 3430 51.63 13.656 1 12490000 11631 3814 7333 7336 11909 11909 -0.032547225441931005 EETRRNFEA 9 Unmodified _EETRRNFEA_ 0 0 0 nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF nc|ENSG00000133706|Q9P2J5-2|LARS1 nc|ENSG00000133706|Q9P2J5-2|LARS1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.275626 1150.5367 0.26795 0.00015442 -0.025575 -1.4738E-05 0.24238 0.00013968 576.275611177793 20.084 0.63402 20.084 19.825 20.459 0 -0.007139 -3.0026E-05 NaN 23.79 51 17 4 NaN NaN NaN NaN 0 NaN NaN 0 23038000 11632 3814 7333 7336 -0.032547225441931005 EETRRNFEA 9 Unmodified _EETRRNFEA_ 0 0 0 nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF nc|ENSG00000133706|Q9P2J5-2|LARS1 nc|ENSG00000133706|Q9P2J5-2|LARS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.275626 1150.5367 -0.071823 -4.139E-05 0.37553 0.00021641 0.30371 0.00017502 576.2758601802183 21.471 0.52012 20.087 19.828 20.348 -1.3847 -0.0044763 0.00043227 NaN 23.79 46 14 4 NaN NaN NaN NaN 0 NaN NaN 0 15404000 11633 3814 7333 7336 -0.032547225441931005 EETSRALSA 9 Unmodified _EETSRALSA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78753662109375 2 482.240721 962.466889 0.027522 1.3272E-05 0.021673 1.0452E-05 0.049196 2.3724E-05 482.2406697257905 22.359 0.52229 22.359 22.086 22.609 0 37 14 3 0 0 0 0.13841 1 3744 3744 55.503 15.553 1 17226000 11634 6567 7334 7337 11910 11910 -0.015846012128235998 EETSRALSA 9 Unmodified _EETSRALSA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7873229980469 2 482.240721 962.466889 0.9144 0.00044096 -0.74153 -0.0003576 0.17287 8.3363E-05 482.2402645414923 23.751 0.59169 22.198 21.834 22.425 -1.5532 37 16 3 0 0 0 0.068106 1 4124 4124 83.429 31.16 1 13608000 11635 6567 7334 7337 11911 11911 -0.015846012128235998 EETSRALSA 9 Unmodified _EETSRALSA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78717041015625 2 482.240721 962.466889 0.0084018 4.0517E-06 0.25921 0.000125 0.26761 0.00012905 482.24072947232185 23.659 0.69393 22.205 21.749 22.443 -1.4535 42 19 4 0 0 0 0.4398 1 3856 3856 41.956 11.319 1 11470000 11636 6567 7334 7337 11912 11912 -0.015846012128235998 EETSRALSA 9 Unmodified _EETSRALSA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7875061035156 2 482.240721 962.466889 -0.44214 -0.00021322 0.62278 0.00030033 0.18064 8.7111E-05 482.24095810202454 23.923 0.51772 22.134 21.876 22.394 -1.7886 41 14 4 0 0 0 0.11519 1 3880 3880 61.602 35.334 1 8076300 11637 6567 7334 7337 11913 11913 -0.015846012128235998 EETTDDPRKL 10 Unmodified _EETTDDPRKL_ 0 0 0 CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.K219Sfs*24|1|0.25|ENSG00000096401|chr6:44403919-44403919|A/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.29736328125 2 602.296224 1202.5779 NaN NaN NaN NaN NaN NaN NaN 117.25 1 112.67 112.17 113.17 -4.5815 0 0 0 0.22552 1 22499 22499 18.146 1.9972 1 11638 455;456 7335 7338 11914 11914 -0.015290062953681627 EETTSIATA 9 Unmodified _EETTSIATA_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;ZMYM3|p.G372Vfs*75|1|0.65|ENSG00000147130|chrX:71250164-71250164|A/-|frameshift_variant;nc|ENSG00000147130|Q14202-3|ZMYM3;ZMYM3|p.I587Hfs*17|1|0.18|ENSG00000147130|chrX:71248504-71248505|-/C|frameshift_variant;ENST00000489332.1_1_X:70467340-70473105:-|nuORF nc|ENSG00000147130|Q14202-2|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5227355957031 2 461.72183 921.429106 -0.47838 -0.00022088 0.77657 0.00035856 0.29819 0.00013768 461.72212744075006 36.024 1.1343 33.63 33.164 34.298 -2.3938 66 31 3 0 0 0 0.063365 1 6610 6610 85.357 31.781 1 5952800 11639 4685 7336 7339 11915 11915 -0.034751121982708355 EETTSIATA 9 Unmodified _EETTSIATA_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;ZMYM3|p.G372Vfs*75|1|0.65|ENSG00000147130|chrX:71250164-71250164|A/-|frameshift_variant;nc|ENSG00000147130|Q14202-3|ZMYM3;ZMYM3|p.I587Hfs*17|1|0.18|ENSG00000147130|chrX:71248504-71248505|-/C|frameshift_variant;ENST00000489332.1_1_X:70467340-70473105:-|nuORF nc|ENSG00000147130|Q14202-2|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5246276855469 2 461.72183 921.429106 0.28844 0.00013318 0.055601 2.5672E-05 0.34404 0.00015885 461.72181105426876 36.043 1.0196 33.767 33.316 34.336 -2.2766 65 28 3 0 0 0 0.55539 1 6283 6283 23.148 8.5667 1 3551500 11640 4685 7336 7339 11916 11916 -0.034751121982708355 EETTSIATA 9 Unmodified _EETTSIATA_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;ZMYM3|p.G372Vfs*75|1|0.65|ENSG00000147130|chrX:71250164-71250164|A/-|frameshift_variant;nc|ENSG00000147130|Q14202-3|ZMYM3;ZMYM3|p.I587Hfs*17|1|0.18|ENSG00000147130|chrX:71248504-71248505|-/C|frameshift_variant;ENST00000489332.1_1_X:70467340-70473105:-|nuORF nc|ENSG00000147130|Q14202-2|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.72183 921.429106 0.19406 8.96E-05 0.19287 8.9054E-05 0.38693 0.00017865 461.721839511831 33.894 1.1124 33.894 33.508 34.62 0 0.14011 -0.00012953 NaN 85.357 57 31 2 NaN NaN NaN NaN 0 NaN NaN 0 4621400 11641 4685 7336 7339 -0.034751121982708355 EETVAIQPGH 10 Unmodified _EETVAIQPGH_ 0 0 0 ENST00000566541.5_3_16:31886566-31901532:+|nuORF ENST00000566541.5_3_16:31886566-31901532:+|nuORF ENST00000566541.5_3_16:31886566-31901532:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.270751953125 2 540.769645 1079.52474 0.45002 0.00024336 -0.59083 -0.0003195 -0.14081 -7.6147E-05 540.7693817115686 69.663 0.48686 66.083 65.755 66.242 -3.5798 33 13 3 0 0 0 0.10354 1 13141 13141 58.679 14.821 1 5799300 11642 11369 7337 7340 11917 11917 -0.011843392873743142 EETVAIQPGH 10 Unmodified _EETVAIQPGH_ 0 0 0 ENST00000566541.5_3_16:31886566-31901532:+|nuORF ENST00000566541.5_3_16:31886566-31901532:+|nuORF ENST00000566541.5_3_16:31886566-31901532:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2711791992188 2 540.769645 1079.52474 0.42155 0.00022796 -0.40708 -0.00022014 0.014474 7.8269E-06 540.7694729742034 69.557 0.48455 66.167 65.809 66.294 -3.3903 31 13 3 0 0 0 0.23765 1 13117 13117 41.84 1.8899 1 4787600 11643 11369 7337 7340 11918 11918 -0.011843392873743142 EETVAIQPGH 10 Unmodified _EETVAIQPGH_ 0 0 0 ENST00000566541.5_3_16:31886566-31901532:+|nuORF ENST00000566541.5_3_16:31886566-31901532:+|nuORF ENST00000566541.5_3_16:31886566-31901532:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.769645 1079.52474 -0.03265 -1.7656E-05 -0.27426 -0.00014831 -0.30691 -0.00016597 540.7695847725439 66.063 0.48013 66.063 65.794 66.274 0 -0.04111 0.00017094 NaN 58.679 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 5875500 11644 11369 7337 7340 -0.011843392873743142 EETVDLIRL 9 Unmodified _EETVDLIRL_ 0 0 0 tr|U7T2L2|U7T2L2_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00489PE=4SV=1 tr|U7T2L2|U7T2L2_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00489PE=4SV=1 tr|U7T2L2|U7T2L2_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00489PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7947998046875 2 544.303321 1086.59209 0.065926 3.5884E-05 1.7708 0.00096383 1.8367 0.00099972 544.8081111610094 133.84 0.10139 128.96 128.89 128.99 -4.8726 4 2 2 0 0 0 0.74655 1 25710 25710 15.847 1.0089 1 847530 11645 26371 7338 7341 11919 11919 0.05225690923566617 EETVFPKA 8 Unmodified _EETVFPKA_ 0 0 0 ENSG00000165732|ENST00000354185|DDX21;DDX21|p.I198Hfs*12|1|0.07|ENSG00000165732|chr10:68962140-68962141|-/ACATCACT|frameshift_variant;DDX21|p.N117Mfs*9|1|0.26|ENSG00000165732|chr10:68960063-68960063|A/-|frameshift_variant ENSG00000165732|ENST00000354185|DDX21 ENSG00000165732|ENST00000354185|DDX21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23626708984375 2 460.739825 919.465098 -0.064539 -2.9736E-05 0.68994 0.00031788 0.6254 0.00028815 460.7400405438238 64.992 1.0226 61.945 61.456 62.478 -3.047 72 29 3 0 0 0 0.47312 1 12549 12549 46.021 19.137 1 8022200 11646 5658 7339 7342 11920 11920 0.002143897692349128 EETVFPKA 8 Unmodified _EETVFPKA_ 0 0 0 ENSG00000165732|ENST00000354185|DDX21;DDX21|p.I198Hfs*12|1|0.07|ENSG00000165732|chr10:68962140-68962141|-/ACATCACT|frameshift_variant;DDX21|p.N117Mfs*9|1|0.26|ENSG00000165732|chr10:68960063-68960063|A/-|frameshift_variant ENSG00000165732|ENST00000354185|DDX21 ENSG00000165732|ENST00000354185|DDX21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2486572265625 2 460.739825 919.465098 0.18383 8.4699E-05 0.39306 0.0001811 0.57689 0.0002658 460.7399154816414 65.334 1.0151 61.876 61.404 62.419 -3.4581 63 28 3 0 0 0 0.47312 1 12248 12248 46.021 9.8939 1 5826700 11647 5658 7339 7342 11921 11921 0.002143897692349128 EETVFPKA 8 Unmodified _EETVFPKA_ 0 0 0 ENSG00000165732|ENST00000354185|DDX21;DDX21|p.I198Hfs*12|1|0.07|ENSG00000165732|chr10:68962140-68962141|-/ACATCACT|frameshift_variant;DDX21|p.N117Mfs*9|1|0.26|ENSG00000165732|chr10:68960063-68960063|A/-|frameshift_variant ENSG00000165732|ENST00000354185|DDX21 ENSG00000165732|ENST00000354185|DDX21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5260009765625 2 460.739825 919.465098 0.30094 0.00013865 1.1192 0.00051564 1.4201 0.00065429 460.7399044807606 65.201 1.0551 61.917 61.35 62.406 -3.2832 93 30 4 0 0 0 0.36038 2 12256 12256;12313 34.102 14.663 1 7453000 11648 5658 7339 7342 11922;11923 11922 0.002143897692349128 EETVFYGL 8 Unmodified _EETVFYGL_ 0 0 0 ENST00000489732.1_1_7:105917445-105925330:-|nuORF;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF;ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT ENST00000489732.1_1_7:105917445-105925330:-|nuORF ENST00000489732.1_1_7:105917445-105925330:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7217102050781 2 479.231833 956.449113 -0.049424 -2.3686E-05 0.19792 9.4848E-05 0.14849 7.1162E-05 479.23189900262025 151.75 0.70726 151.75 151.34 152.05 0 22 19 2 0 0 0 0.67678 1 30337 30337 34.187 14.748 1 1613400 11649 2347 7340 7343 11924 11924 -0.03085316467672783 EETVGGGA 8 Unmodified _EETVGGGA_ 0 0 0 REV__ENSG00000171223|ENST00000302754|JUNB REV__ENSG00000171223|ENST00000302754|JUNB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2021484375 2 360.163951 718.313348 NaN NaN NaN NaN NaN NaN NaN 124.62 1 120.02 119.52 120.52 -4.5984 0 0 0 0.21486 1 24575 24575 9.3474 0 1 + 11650 18213 7341 7344 11925 11925 -0.05707591258465072 EETVGGGA 8 Unmodified _EETVGGGA_ 0 0 0 REV__ENSG00000171223|ENST00000302754|JUNB REV__ENSG00000171223|ENST00000302754|JUNB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20721435546875 2 360.163951 718.313348 NaN NaN NaN NaN NaN NaN NaN 132.7 1 127.91 127.41 128.41 -4.799 0 0 0 0.23366 1 25540 25540 0.25148 0 1 + 11651 18213 7341 7344 11926 11926 -0.05707591258465072 EETVGIFSP 9 Unmodified _EETVGIFSP_ 0 0 0 nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;SHPRH|p.L762Wfs*6|1|0.29|ENSG00000146414|chr6:145941828-145941828|A/-|frameshift_variant;SHPRH|p.E166Nfs*3|2|0.15|ENSG00000146414|chr6:145954828-145954828|T/-|frameshift_variant;SHPRH|p.K162Nfs*8|1|0.06|ENSG00000146414|chr6:145954837-145954838|-/GG|frameshift_variant;SHPRH|p.E166Rfs*7|3|0.26|ENSG00000146414|chr6:145954827-145954828|-/T|frameshift_variant;SHPRH|p.K420Ifs*4|1|0.09|ENSG00000146414|chr6:145946295-145946296|-/ATATA|frameshift_variant;SHPRH|p.G458Rfs*9|1|0.36|ENSG00000146414|chr6:145945587-145945588|-/T|frameshift_variant;nc|ENSG00000146414|Q149N8-5|SHPRH;SHPRH|p.G458Efs*26|2|0.28|ENSG00000146414|chr6:145945588-145945588|T/-|frameshift_variant nc|ENSG00000146414|Q149N8-4|SHPRH nc|ENSG00000146414|Q149N8-4|SHPRH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2582702636719 2 489.742565 977.470577 0.096636 4.7327E-05 -0.065861 -3.2255E-05 0.030775 1.5072E-05 489.7426820078979 131.01 0.71828 126.37 126.07 126.79 -4.6359 29 19 2 0 0 0 0.36689 1 25782 25782 34.102 15.967 1 2262500 11652 4653 7342 7345 11927 11927 -0.01905931438955122 EETVGIFSP 9 Unmodified _EETVGIFSP_ 0 0 0 nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;SHPRH|p.L762Wfs*6|1|0.29|ENSG00000146414|chr6:145941828-145941828|A/-|frameshift_variant;SHPRH|p.E166Nfs*3|2|0.15|ENSG00000146414|chr6:145954828-145954828|T/-|frameshift_variant;SHPRH|p.K162Nfs*8|1|0.06|ENSG00000146414|chr6:145954837-145954838|-/GG|frameshift_variant;SHPRH|p.E166Rfs*7|3|0.26|ENSG00000146414|chr6:145954827-145954828|-/T|frameshift_variant;SHPRH|p.K420Ifs*4|1|0.09|ENSG00000146414|chr6:145946295-145946296|-/ATATA|frameshift_variant;SHPRH|p.G458Rfs*9|1|0.36|ENSG00000146414|chr6:145945587-145945588|-/T|frameshift_variant;nc|ENSG00000146414|Q149N8-5|SHPRH;SHPRH|p.G458Efs*26|2|0.28|ENSG00000146414|chr6:145945588-145945588|T/-|frameshift_variant nc|ENSG00000146414|Q149N8-4|SHPRH nc|ENSG00000146414|Q149N8-4|SHPRH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25408935546875 2 489.742565 977.470577 0.14135 6.9223E-05 0.5287 0.00025893 0.67005 0.00032815 489.7428037586057 131.17 0.61693 126.33 126.17 126.79 -4.8355 27 17 2 0 0 0 0.16442 1 25227 25227 42.095 15.753 1 1952100 11653 4653 7342 7345 11928 11928 -0.01905931438955122 EETVGIFSP 9 Unmodified _EETVGIFSP_ 0 0 0 nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;SHPRH|p.L762Wfs*6|1|0.29|ENSG00000146414|chr6:145941828-145941828|A/-|frameshift_variant;SHPRH|p.E166Nfs*3|2|0.15|ENSG00000146414|chr6:145954828-145954828|T/-|frameshift_variant;SHPRH|p.K162Nfs*8|1|0.06|ENSG00000146414|chr6:145954837-145954838|-/GG|frameshift_variant;SHPRH|p.E166Rfs*7|3|0.26|ENSG00000146414|chr6:145954827-145954828|-/T|frameshift_variant;SHPRH|p.K420Ifs*4|1|0.09|ENSG00000146414|chr6:145946295-145946296|-/ATATA|frameshift_variant;SHPRH|p.G458Rfs*9|1|0.36|ENSG00000146414|chr6:145945587-145945588|-/T|frameshift_variant;nc|ENSG00000146414|Q149N8-5|SHPRH;SHPRH|p.G458Efs*26|2|0.28|ENSG00000146414|chr6:145945588-145945588|T/-|frameshift_variant nc|ENSG00000146414|Q149N8-4|SHPRH nc|ENSG00000146414|Q149N8-4|SHPRH MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.742565 977.470577 0.18617 9.1174E-05 1.0421 0.00051035 1.2283 0.00060153 489.7431111120226 126.19 0.5722 126.19 125.96 126.54 0 -0.128 0.00053199 NaN 42.095 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2016900 11654 4653 7342 7345 -0.01905931438955122 EETVGIFSP 9 Unmodified _EETVGIFSP_ 0 0 0 nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;SHPRH|p.L762Wfs*6|1|0.29|ENSG00000146414|chr6:145941828-145941828|A/-|frameshift_variant;SHPRH|p.E166Nfs*3|2|0.15|ENSG00000146414|chr6:145954828-145954828|T/-|frameshift_variant;SHPRH|p.K162Nfs*8|1|0.06|ENSG00000146414|chr6:145954837-145954838|-/GG|frameshift_variant;SHPRH|p.E166Rfs*7|3|0.26|ENSG00000146414|chr6:145954827-145954828|-/T|frameshift_variant;SHPRH|p.K420Ifs*4|1|0.09|ENSG00000146414|chr6:145946295-145946296|-/ATATA|frameshift_variant;SHPRH|p.G458Rfs*9|1|0.36|ENSG00000146414|chr6:145945587-145945588|-/T|frameshift_variant;nc|ENSG00000146414|Q149N8-5|SHPRH;SHPRH|p.G458Efs*26|2|0.28|ENSG00000146414|chr6:145945588-145945588|T/-|frameshift_variant nc|ENSG00000146414|Q149N8-4|SHPRH nc|ENSG00000146414|Q149N8-4|SHPRH MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.742565 977.470577 -0.064347 -3.1514E-05 0.59502 0.00029141 0.53067 0.00025989 489.7428272166894 131.16 0.63139 126.38 126.12 126.75 -4.7725 0.063547 9.4099E-05 NaN 42.095 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1780700 11655 4653 7342 7345 -0.01905931438955122 EETVKLFIC 9 Unmodified _EETVKLFIC_ 0 0 0 nc|ENSG00000169302|Q8WU08-3|STK32A;ENST00000306304.10_1_5:146619197-146754823:+|nuORF;ENSG00000169302|ENST00000397936|STK32A;nc|ENSG00000169302|Q8WU08-2|STK32A nc|ENSG00000169302|Q8WU08-3|STK32A nc|ENSG00000169302|Q8WU08-3|STK32A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2828979492188 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 74.645 1 71.281 70.781 71.781 -3.3643 0 0 0 0.18705 1 14562 14562 25.399 8.457 1 11656 5977 7343 7346 11929 11929 0.015478476484986459 EETVMPIQP 9 Unmodified _EETVMPIQP_ 0 0 0 REV__ENSG00000121406|ENST00000376233|ZNF549 REV__ENSG00000121406|ENST00000376233|ZNF549 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2567749023438 2 522.257525 1042.5005 NaN NaN NaN NaN NaN NaN NaN 20.383 1 20.383 19.883 20.883 0 0 0 0 0.23508 1 3370 3370 10.074 0 1 + 11657 15656 7344 7347 11930 11930 -0.01905315765270643 EETVPLVE 8 Unmodified _EETVPLVE_ 0 0 0 REV__nc|ENSG00000163673|Q9C098|DCLK3 REV__nc|ENSG00000163673|Q9C098|DCLK3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2386779785156 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 50.832 1 47.949 47.449 48.449 -2.8824 0 0 0 0.21452 1 9650 9650 13.508 0 1 + 11658 17598 7345 7348 11931 11931 -0.0009733381323258072 EETWDENY 8 Unmodified _EETWDENY_ 0 0 0 tr|U7SY39|U7SY39_FUSNUAnaerobicribonucleoside-triphosphatereductase-activatingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00946PE=3SV=1 tr|U7SY39|U7SY39_FUSNUAnaerobicribonucleoside-triphosphatereductase-activatingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00946PE=3SV=1 tr|U7SY39|U7SY39_FUSNUAnaerobicribonucleoside-triphosphatereductase-activatingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00946PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7894287109375 2 543.206544 1084.39853 0.68299 0.000371 1.2896 0.00070053 1.9726 0.0010715 543.2072305291036 47.615 0.24522 47.615 47.505 47.751 0 8 6 2 0 0 0 0.72861 1 8975 8975 10.183 1.5901 1 653900 11659 26275 7346 7349 11932 11932 -0.14028890583313114 EETWELLY 8 Unmodified _EETWELLY_ 0 0 0 REV__ENSG00000105186|ENST00000306065|ANKRD27 REV__ENSG00000105186|ENST00000306065|ANKRD27 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2776489257812 2 541.755672 1081.49679 0.71549 0.00038762 -0.7268 -0.00039375 -0.011307 -6.1254E-06 541.7554594579619 21.628 0.391 20.154 19.912 20.303 -1.4742 17 10 3 0 0 0 1.0095 1 3696 3696 10.183 3.9776 1 698050 + 11660 14967 7347 7350 11933 11933 -0.04069662267465901 EEVAGTLEA 9 Unmodified _EEVAGTLEA_ 0 0 0 ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2265625 2 459.724372 917.434192 -0.055566 -2.5545E-05 0.073424 3.3755E-05 0.017858 8.2098E-06 459.7243933234176 58.248 0.89693 58.248 57.86 58.757 0 49 25 3 0 0 0 0.22334 1 11121 11121 36.044 1.9418 1 5053900 11661 5118 7348 7351 11934 11934 -0.027828083356666866 EEVAGTLEA 9 Unmodified _EEVAGTLEA_ 0 0 0 ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2353820800781 2 459.724372 917.434192 -0.068691 -3.1579E-05 0.22542 0.00010363 0.15673 7.2053E-05 459.72439870301207 61.071 0.92898 58.137 57.787 58.716 -2.9333 51 26 3 0 0 0 0.011131 1 11775 11775 47.987 25.367 1 6015300 11662 5118 7348 7351 11935 11935 -0.027828083356666866 EEVAGTLEA 9 Unmodified _EEVAGTLEA_ 0 0 0 ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23382568359375 2 459.724372 917.434192 0.059191 2.7211E-05 0.17584 8.0838E-05 0.23503 0.00010805 459.7243928479096 61.572 0.98623 58.203 57.795 58.781 -3.3694 45 27 3 0 0 0 0.034088 3 11516 11456;11510;11516 54.068 27.073 1 4702000 11663 5118 7348 7351 11936;11937;11938 11938 -0.027828083356666866 EEVAGTLEA 9 Unmodified _EEVAGTLEA_ 0 0 0 ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2362976074219 2 459.724372 917.434192 0.18542 8.5241E-05 0.056301 2.5883E-05 0.24172 0.00011112 459.7243713683507 61.492 1.073 58.253 57.787 58.86 -3.2395 62 30 3 0 0 0 0.03394 1 11481 11481 47.987 25.367 1 4729400 11664 5118 7348 7351 11939 11939 -0.027828083356666866 EEVALRATA 9 Unmodified _EEVALRATA_ 0 0 0 ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;nc|ENSG00000290966|A6NCN2|KRT87P;CON__Q61726;ENSG00000135443|ENST00000257901|KRT85;CON__P78386 ENSG00000170523|ENST00000293670|KRT83 ENSG00000170523|ENST00000293670|KRT83 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2547607421875 2 480.261456 958.50836 0.2102 0.00010095 -0.27983 -0.00013439 -0.069631 -3.3441E-05 480.2613073788354 34.319 0.48853 32.173 31.976 32.464 -2.1468 26 13 3 0 0 0 0.57447 1 6018 6018 14.838 2.3067 1 2209800 + 11665 675 7349 7352 11940 11940 0.027445795465041556 EEVALRATA 9 Unmodified _EEVALRATA_ 0 0 0 ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;nc|ENSG00000290966|A6NCN2|KRT87P;CON__Q61726;ENSG00000135443|ENST00000257901|KRT85;CON__P78386 ENSG00000170523|ENST00000293670|KRT83 ENSG00000170523|ENST00000293670|KRT83 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.261456 958.50836 -0.015451 -7.4206E-06 0.045204 2.171E-05 0.029753 1.4289E-05 480.2614629820115 32.147 0.44942 32.147 31.879 32.329 0 0.0081259 0.00012644 NaN 14.838 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1462000 + 11666 675 7349 7352 0.027445795465041556 EEVALRATA 9 Unmodified _EEVALRATA_ 0 0 0 ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;nc|ENSG00000290966|A6NCN2|KRT87P;CON__Q61726;ENSG00000135443|ENST00000257901|KRT85;CON__P78386 ENSG00000170523|ENST00000293670|KRT83 ENSG00000170523|ENST00000293670|KRT83 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.261456 958.50836 -0.12814 -6.1541E-05 0.15657 7.5193E-05 0.028427 1.3653E-05 480.2615487747444 34.43 0.48167 32.113 31.913 32.395 -2.3175 -0.026538 0.00023341 NaN 14.838 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2255400 + 11667 675 7349 7352 0.027445795465041556 EEVALRATA 9 Unmodified _EEVALRATA_ 0 0 0 ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;nc|ENSG00000290966|A6NCN2|KRT87P;CON__Q61726;ENSG00000135443|ENST00000257901|KRT85;CON__P78386 ENSG00000170523|ENST00000293670|KRT83 ENSG00000170523|ENST00000293670|KRT83 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.261456 958.50836 0.2102 0.00010095 -0.27983 -0.00013439 -0.069631 -3.3441E-05 480.2613073788354 34.319 0.48853 32.173 31.976 32.464 -2.1468 0.03324 -0.00018576 NaN 14.838 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2209800 + 11668 675 7349 7352 0.027445795465041556 EEVALRATA 9 Unmodified _EEVALRATA_ 0 0 0 ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;nc|ENSG00000290966|A6NCN2|KRT87P;CON__Q61726;ENSG00000135443|ENST00000257901|KRT85;CON__P78386 ENSG00000170523|ENST00000293670|KRT83 ENSG00000170523|ENST00000293670|KRT83 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.261456 958.50836 0.32448 0.00015583 -0.24066 -0.00011558 0.083818 4.0254E-05 480.2613328011152 34.34 0.45244 32.124 31.951 32.403 -2.2158 -0.014828 -0.00014813 NaN 14.838 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1815700 + 11669 675 7349 7352 0.027445795465041556 EEVALSALV 9 Unmodified _EEVALSALV_ 0 0 0 REV__CILP|p.G830V|1|0.38|ENSG00000138615|chr15:65197797-65197797|C/A|missense_variant REV__CILP|p.G830V|1|0.38|ENSG00000138615|chr15:65197797-65197797|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25787353515625 2 465.760758 929.506963 0.5318 0.00024769 -0.28202 -0.00013135 0.24979 0.00011634 465.7604408026713 80.064 0.48779 80.064 79.793 80.28 0 20 13 2 0 0 0 0.23667 1 15586 15586 50.855 0.92203 1 1859700 + 11670 13438 7350 7353 11941 11941 0.03938945457753107 EEVCYKVFY 9 Unmodified _EEVCYKVFY_ 0 0 0 REV__GTF2I|p.D75Y|1|0.12|ENSG00000263001|chr7:74691096-74691096|G/T|missense_variant REV__GTF2I|p.D75Y|1|0.12|ENSG00000263001|chr7:74691096-74691096|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2645874023438 2 590.273175 1178.5318 NaN NaN NaN NaN NaN NaN NaN 147.63 1 142.57 142.07 143.07 -5.0595 0 0 0 0.23508 1 28585 28585 8.5933 0.68312 1 + 11671 23597 7351 7354 11942 11942 -0.050327427311685824 EEVDKIPFVK 10 Unmodified _EEVDKIPFVK_ 0 0 0 RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.289306640625 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 154.54 1 149.25 148.75 149.75 -5.2854 0 0 0 2.8426 1 29966 29966 0.063865 0.050599 1 11672 6072 7352 7355 11943 11943 0.06146836991752025 EEVEALEP 8 Unmodified _EEVEALEP_ 0 0 0 REV__CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant REV__CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2209167480469 2 458.218923 914.423293 NaN NaN NaN NaN NaN NaN NaN 42.387 1 39.781 39.281 40.281 -2.606 0 0 0 0.21323 1 7623 7623 14.582 0 1 + 11673 13399 7353 7356 11944 11944 -0.037342107099448185 EEVEEIPA 8 Unmodified _EEVEEIPA_ 0 0 0 ENSG00000145362|ENST00000357077|ANK2;ANK2|p.A3198D|1|0.19|ENSG00000145362|chr4:113358211-113358211|C/A|missense_variant ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2197570800781 2 458.218923 914.423293 NaN NaN NaN NaN NaN NaN NaN 37.245 1 34.776 34.276 35.276 -2.4688 0 0 0 0.21323 1 6876 6876 14.582 0 1 11674 4604 7354 7357 11945 11945 -0.037342107099448185 EEVEFNVSE 9 Unmodified _EEVEFNVSE_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ARHGAP17|p.P543Lfs*55|1|0.3|ENSG00000140750|chr16:24939460-24939460|G/-|frameshift_variant;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ENST00000575412.1_1_16:24953198-24955137:-|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2726440429688 2 541.237844 1080.46113 0.26577 0.00014385 1.3765 0.00074502 1.6423 0.00088886 541.2386256704646 131.21 0.92442 126.43 126.01 126.93 -4.7725 36 25 2 0 0 0 0.74655 1 25319 25319 10.824 3.5347 1 1361300 11675 4323 7355 7358 11946 11946 -0.0758774451512636 EEVEGPSLNI 10 Unmodified _EEVEGPSLNI_ 0 0 0 REV__nc|ENSG00000185046|Q7Z6G8|ANKS1B REV__nc|ENSG00000185046|Q7Z6G8|ANKS1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7887573242188 2 543.769311 1085.52407 NaN NaN NaN NaN NaN NaN NaN 127.91 1 123.29 122.79 123.79 -4.6172 0 0 0 2.8426 1 25222 25222 1.9275 0.86236 1 + 11676 18935 7356 7359 11947 11947 -0.015271787270876303 EEVETFAF 8 Unmodified _EEVETFAF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.Q85Kfs*14|1|0.05|ENSG00000080824|chr14:102086034-102086034|G/-|frameshift_variant;HSP90AA1|p.A24T|1|0.11|ENSG00000080824|chr14:102086309-102086309|C/T|missense_variant;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 487.21636962890625 2 486.221465 970.428378 0.12441 6.049E-05 0.16779 8.1583E-05 0.2922 0.00014207 486.22147650013375 140.31 1.2465 140.31 139.78 141.03 0 117 35 4 0 0 0 8448 1 27866 27866 113.99 68.988 1 138520000 11677 1874;1620 7357 7360 11948 11948 -0.05801906847318605 EEVETFAF 8 Unmodified _EEVETFAF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.Q85Kfs*14|1|0.05|ENSG00000080824|chr14:102086034-102086034|G/-|frameshift_variant;HSP90AA1|p.A24T|1|0.11|ENSG00000080824|chr14:102086309-102086309|C/T|missense_variant;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 487.7253723144531 2 486.221465 970.428378 0.0884 4.2982E-05 0.19688 9.5725E-05 0.28528 0.00013871 486.2214670058174 145.55 1.587 140.6 140 141.59 -4.9445 147 45 5 0 0 0 8448 1 28065 28065 19.391 16.748 1 118720000 11678 1874;1620 7357 7360 11949 11949 -0.05801906847318605 EEVFDERAAN 10 Unmodified _EEVFDERAAN_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2671508789062 2 590.267467 1178.52038 NaN NaN NaN NaN NaN NaN NaN 56.216 1 53.027 52.527 53.527 -3.1895 0 0 0 0.22527 1 10413 10413 21.537 1.0834 1 11679 1167 7358 7361 11950 11950 -0.06173848500930035 EEVFDERAAN 10 Unmodified _EEVFDERAAN_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2672729492188 2 590.267467 1178.52038 NaN NaN NaN NaN NaN NaN NaN 56.376 1 53.2 52.7 53.7 -3.1761 0 0 0 0.22583 1 10487 10487 13.906 0.86358 1 11680 1167 7358 7361 11951 11951 -0.06173848500930035 EEVFNTAVA 9 Unmodified _EEVFNTAVA_ 0 0 0 ENSG00000090889|ENST00000374403|KIF4A;nc|ENSG00000090889|O95239-2|KIF4A;KIF4A|p.D669Rfs*13|1|0.06|ENSG00000090889|chrX:70376174-70376175|-/A|frameshift_variant ENSG00000090889|ENST00000374403|KIF4A ENSG00000090889|ENST00000374403|KIF4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2567443847656 2 490.24019 978.465826 0.10981 5.3832E-05 -0.23497 -0.00011519 -0.12516 -6.1358E-05 490.24018419834175 93.326 0.68887 89.336 89.002 89.691 -3.9907 31 19 2 0 0 0 0.057505 1 18302 18302 68.081 37.444 1 1405800 11681 1794 7359 7362 11952 11952 -0.0242681558172535 EEVFNTAVA 9 Unmodified _EEVFNTAVA_ 0 0 0 ENSG00000090889|ENST00000374403|KIF4A;nc|ENSG00000090889|O95239-2|KIF4A;KIF4A|p.D669Rfs*13|1|0.06|ENSG00000090889|chrX:70376174-70376175|-/A|frameshift_variant ENSG00000090889|ENST00000374403|KIF4A ENSG00000090889|ENST00000374403|KIF4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2662048339844 2 490.24019 978.465826 0.31601 0.00015492 -0.23756 -0.00011646 0.07845 3.8459E-05 490.24016129560977 93.561 0.63755 89.417 89.115 89.752 -4.1435 27 18 2 0 0 0 0.057505 2 17849 17849;17869 68.081 37.856 1 1799400 11682 1794 7359 7362 11953;11954 11953 -0.0242681558172535 EEVFNTAVA 9 Unmodified _EEVFNTAVA_ 0 0 0 ENSG00000090889|ENST00000374403|KIF4A;nc|ENSG00000090889|O95239-2|KIF4A;KIF4A|p.D669Rfs*13|1|0.06|ENSG00000090889|chrX:70376174-70376175|-/A|frameshift_variant ENSG00000090889|ENST00000374403|KIF4A ENSG00000090889|ENST00000374403|KIF4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2641906738281 2 490.24019 978.465826 -0.17667 -8.6609E-05 0.13046 6.3956E-05 -0.046207 -2.2653E-05 490.24030647023017 93.259 0.59077 89.415 89.158 89.748 -3.844 26 16 2 0 0 0 0.034704 1 17882 17882 78.149 44.047 1 1856200 11683 1794 7359 7362 11955 11955 -0.0242681558172535 EEVGAWVQY 9 Unmodified _EEVGAWVQY_ 0 0 0 CAMKMT|p.S100Rfs*4|1|0.06|ENSG00000143919|chr2:44372877-44372877|T/-|frameshift_variant;CAMKMT|p.S102Kfs*3|1|0.06|ENSG00000143919|chr2:44372879-44372883|TCTCC/-|frameshift_variant;nc|ENSG00000143919|Q7Z624-2|CAMKMT;CAMKMT|p.G155Vfs*3|1|0.31|ENSG00000143919|chr2:44706309-44706309|G/-|frameshift_variant;ENSG00000143919|ENST00000378494|CAMKMT CAMKMT|p.S100Rfs*4|1|0.06|ENSG00000143919|chr2:44372877-44372877|T/-|frameshift_variant CAMKMT|p.S100Rfs*4|1|0.06|ENSG00000143919|chr2:44372877-44372877|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2713623046875 2 540.753464 1079.49238 0.23799 0.00012869 -1.7638 -0.00095377 -1.5258 -0.00082507 541.2527102282345 98.369 0.38171 94.236 94.09 94.472 -4.1326 20 10 3 0 0 0 0.77732 1 19302 19302 18.135 6.4947 1 1145600 11684 371 7360 7363 11956 11956 -0.044191266903681026 EEVGGNIVIY 10 Unmodified _EEVGGNIVIY_ 0 0 0 REV__ENST00000472059.5_1_17:19558694-19578882:+|nuORF REV__ENST00000472059.5_1_17:19558694-19578882:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7898559570312 2 546.782222 1091.54989 -0.037899 -2.0723E-05 2.7292 0.0014923 2.6913 0.0014716 546.7826069332532 82.699 0.65998 79.001 78.694 79.354 -3.6985 36 18 3 0 0 0 0.65405 1 15741 15741 15.847 2.3393 1 2803300 + 11685 13006 7361 7364 11957 11957 0.007777155151870829 EEVGGNIVIY 10 Unmodified _EEVGGNIVIY_ 0 0 0 REV__ENST00000472059.5_1_17:19558694-19578882:+|nuORF REV__ENST00000472059.5_1_17:19558694-19578882:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.782222 1091.54989 0.19209 0.00010503 1.4722 0.00080496 1.6643 0.00090999 546.7823394438545 82.558 0.59437 78.95 78.672 79.266 -3.6079 -0.046574 -0.00018923 NaN 15.847 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2845900 + 11686 13006 7361 7364 0.007777155151870829 EEVGGNIVIY 10 Unmodified _EEVGGNIVIY_ 0 0 0 REV__ENST00000472059.5_1_17:19558694-19578882:+|nuORF REV__ENST00000472059.5_1_17:19558694-19578882:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.782222 1091.54989 0.11527 6.3026E-05 1.2573 0.00068744 1.3725 0.00075047 546.7825077093377 82.913 0.62634 79.039 78.668 79.294 -3.8736 0.042297 -0.00042426 NaN 15.847 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2074900 + 11687 13006 7361 7364 0.007777155151870829 EEVGGNIVIY 10 Unmodified _EEVGGNIVIY_ 0 0 0 REV__ENST00000472059.5_1_17:19558694-19578882:+|nuORF REV__ENST00000472059.5_1_17:19558694-19578882:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.782222 1091.54989 -0.037899 -2.0723E-05 2.7292 0.0014923 2.6913 0.0014716 546.7826069332532 82.699 0.65998 79.001 78.694 79.354 -3.6985 0.0042769 0.0011854 NaN 15.847 36 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2803300 + 11688 13006 7361 7364 0.007777155151870829 EEVGVQVF 8 Unmodified _EEVGVQVF_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1;TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7555847167969 2 453.732 905.449448 NaN NaN NaN NaN NaN NaN NaN 122.44 1 117.91 117.41 118.41 -4.5305 0 0 0 0.18417 1 23572 23572 30.225 10.786 1 11689 3971 7362 7365 11958 11958 -0.007058967478087652 EEVHFRLN 8 Unmodified _EEVHFRLN_ 0 0 0 REV__nc|ENSG00000102144|P00558-2|PGK1 REV__nc|ENSG00000102144|P00558-2|PGK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2655029296875 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 51.907 1 48.861 48.361 49.361 -3.0453 0 0 0 0.21452 1 9540 9540 13.508 0.97634 1 + 11690 14824 7363 7366 11959 11959 3.4016406743830885E-05 EEVHIIELI 9 Unmodified _EEVHIIELI_ 0 0 0 TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant;nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7836303710938 2 547.808239 1093.60193 0.17267 9.4592E-05 0.42972 0.0002354 0.60239 0.00032999 547.8084262354089 66.543 0.4527 63.435 63.129 63.582 -3.1086 20 12 2 0 0 0 0.79204 1 12831 12831 16.942 13.346 1 1506600 11691 1419 7364 7367 11960 11960 0.058868789289590495 EEVHTTNEQ 9 Unmodified _EEVHTTNEQ_ 0 0 0 REV__nc|ENSG00000182253|O15061-2|SYNM REV__nc|ENSG00000182253|O15061-2|SYNM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7952880859375 2 543.738542 1085.46253 0.1113 6.0517E-05 -1.3601 -0.00073955 -1.2488 -0.00067903 543.7380761829448 113.76 0.41231 109.3 109.11 109.53 -4.4539 15 11 2 0 0 0 0.7906 1 22389 22389 18.146 0 1 1522700 + 11692 18769 7365 7368 11961 11961 -0.07678110426377316 EEVIEDWY 8 Unmodified _EEVIEDWY_ 0 0 0 CNPY3|p.D276*|1|0.32|ENSG00000137161|chr6:42938772-42938773|-/C|frameshift_variant;ENSG00000137161|ENST00000372836|CNPY3 CNPY3|p.D276*|1|0.32|ENSG00000137161|chr6:42938772-42938773|-/C|frameshift_variant CNPY3|p.D276*|1|0.32|ENSG00000137161|chr6:42938772-42938773|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2740478515625 2 541.73748 1081.46041 NaN NaN NaN NaN NaN NaN NaN 77.285 1 73.821 73.321 74.321 -3.4633 0 0 0 0.21486 1 15085 15085 10.183 0 1 11693 597 7366 7369 11962 11962 -0.07706539164178139 EEVIKAVFF 9 Unmodified _EEVIKAVFF_ 0 0 0 tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1 tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1 tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2685546875 2 541.30005 1080.58555 NaN NaN NaN NaN NaN NaN NaN 158.75 1 153.47 152.97 153.97 -5.2748 0 0 0 0.23508 1 30811 30811 11.64 1.5664 1 11694 26043 7367 7370 11963 11963 0.04847797762840855 EEVILLDS 8 Unmodified _EEVILLDS_ 0 0 0 ENSG00000183317|ENST00000373048|EPHA10;nc|ENSG00000183317|Q5JZY3-2|EPHA10;EPHA10|p.R869Gfs*10|1|0.12|ENSG00000183317|chr1:37719566-37719566|G/-|frameshift_variant;nc|ENSG00000183317|Q5JZY3-3|EPHA10 ENSG00000183317|ENST00000373048|EPHA10 ENSG00000183317|ENST00000373048|EPHA10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24761962890625 2 459.244941 916.475328 -0.28013 -0.00012865 0.21295 9.7798E-05 -0.067179 -3.0852E-05 459.24495567133806 104.39 0.71735 100.17 99.791 100.51 -4.2183 53 20 3 0 0 0 0.40661 1 20485 20485 32.117 5.7757 1 13299000 11695 6841 7368 7371 11964 11964 0.013749527038044107 EEVITKLF 8 Unmodified _EEVITKLF_ 0 0 0 REV__ENST00000368141.4_1_1:158801299-158811932:+|nuORF REV__ENST00000368141.4_1_1:158801299-158811932:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2653503417969 2 489.778951 977.543348 0.58017 0.00028415 -0.21994 -0.00010772 0.36023 0.00017643 489.77876699020646 118.59 1.0755 113.98 113.38 114.46 -4.6106 67 29 3 0 0 0 0.07456 2 22751 22751;22797 68.081 1.624 1 32264000 + 11696 20934 7369 7372 11965;11966 11965 0.05367822354469354 EEVIVTEV 8 Unmodified _EEVIVTEV_ 0 0 0 ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant ENSG00000131016|ENST00000402676|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23822021484375 2 459.244941 916.475328 0.57729 0.00026512 -0.56511 -0.00025952 0.012187 5.5967E-06 459.24463068313037 100.34 0.75757 100.34 99.898 100.66 0 56 21 3 0 0 0 0.097641 2 19640 19640;19681 63.563 16.642 1 11402000 11697 3654 7370 7373 11967;11968 11967 0.013749527038044107 EEVIVTEV 8 Unmodified _EEVIVTEV_ 0 0 0 ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant ENSG00000131016|ENST00000402676|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2479553222656 2 459.244941 916.475328 -0.28013 -0.00012865 0.21295 9.7798E-05 -0.067179 -3.0852E-05 459.24495567133806 104.39 0.71735 100.17 99.791 100.51 -4.2183 53 20 3 0 0 0 0.097641 1 20531 20531 63.563 16.642 1 13299000 11698 3654 7370 7373 11969 11969 0.013749527038044107 EEVIVTEV 8 Unmodified _EEVIVTEV_ 0 0 0 ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant ENSG00000131016|ENST00000402676|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2474670410156 2 459.244941 916.475328 0.10049 4.615E-05 -0.18694 -8.5852E-05 -0.086452 -3.9702E-05 459.2447794395224 104.63 0.68731 100.28 99.903 100.59 -4.346 47 19 3 0 0 0 0.097641 2 20052 20007;20052 63.563 16.642 1 10921000 11699 3654 7370 7373 11970;11971 11971 0.013749527038044107 EEVIVTEV 8 Unmodified _EEVIVTEV_ 0 0 0 ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant ENSG00000131016|ENST00000402676|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2475891113281 2 459.244941 916.475328 0.71749 0.0003295 -1.1462 -0.0005264 -0.42874 -0.0001969 459.2443058467412 104.37 0.91853 100.32 99.913 100.83 -4.0543 60 25 3 0 0 0 0.097641 2 20097 20042;20097 63.563 16.093 1 10299000 11700 3654 7370 7373 11972;11973 11973 0.013749527038044107 EEVKDQFATH 10 Unmodified _EEVKDQFATH_ 0 0 0 UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.K1847Ffs*66|1|0.07|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.D384Rfs*6|1|0.19|ENSG00000152818|chr6:144437652-144437653|-/C|frameshift_variant;UTRN|p.L449Pfs*6|1|0.44|ENSG00000152818|chr6:144438843-144438844|-/CC|frameshift_variant;UTRN|p.K951Rfs*32|2|0.22|ENSG00000152818|chr6:144461335-144461335|A/-|frameshift_variant;UTRN|p.L985Wfs*4|1|0.07|ENSG00000152818|chr6:144462753-144462754|-/GGGC|frameshift_variant UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2854614257812 2 602.28566 1202.55677 NaN NaN NaN NaN NaN NaN NaN 95.433 1 91.242 90.742 91.742 -4.1911 0 0 0 0.22588 1 18212 18212 10.824 0 1 11701 4942 7371 7374 11974 11974 -0.03640971604227161 EEVKKTMEA 9 Unmodified _EEVKKTMEA_ 0 0 0 nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;ENST00000483628.1_1:206566231-206579954:+|nuORF;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant nc|ENSG00000196369|P0DMP2|SRGAP2B;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2647705078125 2 532.768257 1063.52196 0.0014881 7.9281E-07 0.081979 4.3676E-05 0.083467 4.4468E-05 532.7683249358282 16.182 0.3117 16.182 16.023 16.335 0 13 8 2 0 0 0 0.012196 1 2494 2494 100.09 55.684 1 3279400 11702 7981;7261 7372 7375 11975 11975 -0.007259307365302448 EEVKKTMEA 9 Unmodified _EEVKKTMEA_ 0 0 0 nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;ENST00000483628.1_1:206566231-206579954:+|nuORF;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant nc|ENSG00000196369|P0DMP2|SRGAP2B;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2698974609375 2 532.768257 1063.52196 -1.2658 -0.00067437 1.2508 0.00066637 -0.015018 -8.0009E-06 532.7690175353373 17.38 0.30821 15.865 15.734 16.042 -1.5148 18 8 3 0 0 0 0.072372 2 2521 2518;2521 63.961 33.324 1 1175500 11703 7981;7261 7372 7375 11976;11977 11977 -0.007259307365302448 EEVKKTMEA 9 Unmodified _EEVKKTMEA_ 0 0 0 nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;ENST00000483628.1_1:206566231-206579954:+|nuORF;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant nc|ENSG00000196369|P0DMP2|SRGAP2B;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.768257 1063.52196 -0.18485 -9.8482E-05 0.4943 0.00026335 0.30945 0.00016486 532.7686169778874 17.274 0.31682 15.998 15.784 16.101 -1.2763 -0.019604 3.9485E-05 NaN 100.09 15 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2126600 11704 7981;7261 7372 7375 -0.007259307365302448 EEVKLQKTL 9 Unmodified _EEVKLQKTL_ 0 0 0 REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7783203125 2 544.321514 1086.62847 0.45542 0.00024789 -0.85089 -0.00046316 -0.39547 -0.00021527 544.3212966072554 118.39 0.6203 113.89 113.63 114.25 -4.502 34 17 3 0 0 0 0.42289 1 23327 23327 32.305 0 1 2152900 + 11705 13277 7373 7376 11978 11978 0.08862567820278855 EEVKLQKTL 9 Unmodified _EEVKLQKTL_ 0 0 0 REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7796630859375 2 544.321514 1086.62847 0.50944 0.0002773 -0.21199 -0.00011539 0.29745 0.00016191 544.3215178893313 118.35 0.5696 113.94 113.75 114.32 -4.4088 29 15 3 0 0 0 0.58699 1 22766 22766 32.305 0 1 1760600 + 11706 13277 7373 7376 11979 11979 0.08862567820278855 EEVKQEITA 9 Unmodified _EEVKQEITA_ 0 0 0 XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant;ENSG00000132953|ENST00000255305|XPO4 XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.680908203125 2 523.771854 1045.52915 -0.36516 -0.00019126 -0.45076 -0.0002361 -0.81593 -0.00042736 523.7719469993783 34.76 0.59198 32.507 32.254 32.846 -2.2527 38 16 3 0 0 0 0.078741 1 6115 6115 79.596 31.848 1 2588100 11707 3773 7374 7377 11980 11980 0.008211251355305649 EEVKQEITA 9 Unmodified _EEVKQEITA_ 0 0 0 XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant;ENSG00000132953|ENST00000255305|XPO4 XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.771854 1045.52915 0.19261 0.00010088 -1.1087 -0.00058068 -0.91605 -0.0004798 523.7716695728577 32.626 0.4159 32.626 32.399 32.815 0 0.084956 -0.00049828 NaN 79.596 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2301800 11708 3773 7374 7377 0.008211251355305649 EEVKQEITA 9 Unmodified _EEVKQEITA_ 0 0 0 XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant;ENSG00000132953|ENST00000255305|XPO4 XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.771854 1045.52915 -0.38678 -0.00020258 -0.07086 -3.7115E-05 -0.45764 -0.0002397 523.7719569407336 34.84 0.55803 32.507 32.278 32.836 -2.3325 -0.033481 0.00058886 NaN 79.596 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2391000 11709 3773 7374 7377 0.008211251355305649 EEVKQEITA 9 Unmodified _EEVKQEITA_ 0 0 0 XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant;ENSG00000132953|ENST00000255305|XPO4 XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant XPO4|p.C1022Afs*8|1|0.21|ENSG00000132953|chr13:20787582-20787582|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.771854 1045.52915 0.39737 0.00020813 -1.1846 -0.00062044 -0.78718 -0.0004123 523.7714731525501 34.8 0.52263 32.523 32.239 32.761 -2.2766 -0.017573 -0.00057779 NaN 79.596 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1798700 11710 3773 7374 7377 0.008211251355305649 EEVKQLVSY 9 Unmodified _EEVKQLVSY_ 0 0 0 ENST00000578252.1_1_18:29450325-29450937:-|nuORF ENST00000578252.1_1_18:29450325-29450937:-|nuORF ENST00000578252.1_1_18:29450325-29450937:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.778564453125 2 547.790047 1093.56554 0.75627 0.00041428 -3.1843 -0.0017443 -2.4281 -0.0013301 547.7885526611088 78.994 0.14129 78.994 78.923 79.064 0 5 3 2 0 0 0 0.60805 1 15363 15363 12.532 1.7076 1 515180 11711 11473 7375 7378 11981 11981 0.022500020322468117 EEVKQMAQ 8 Unmodified _EEVKQMAQ_ 0 0 0 REV__ADGB|p.A1567V|1|0.39|ENSG00000118492|chr6:146801893-146801893|C/T|missense_variant REV__ADGB|p.A1567V|1|0.39|ENSG00000118492|chr6:146801893-146801893|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24578857421875 2 481.734217 961.453881 -0.098363 -4.7385E-05 0.24017 0.0001157 0.14181 6.8315E-05 481.73454725556184 15.002 0.1383 15.002 14.914 15.052 0 5 3 2 0 0 0 0.97173 1 2266 2266 18.135 4.6271 1 314160 + 11712 12959 7376 7379 11982 11982 -0.028387555965423417 EEVKQMAQ 8 Unmodified _EEVKQMAQ_ 0 0 0 REV__ADGB|p.A1567V|1|0.39|ENSG00000118492|chr6:146801893-146801893|C/T|missense_variant REV__ADGB|p.A1567V|1|0.39|ENSG00000118492|chr6:146801893-146801893|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 481.734217 961.453881 -0.43913 -0.00021155 0.72334 0.00034846 0.2842 0.00013691 481.7344708760751 15.962 0.10696 14.746 14.655 14.762 -1.2159 -0.12788 0.00013552 NaN 18.135 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 263590 + 11713 12959 7376 7379 -0.028387555965423417 EEVKVSTM 8 Unmodified _EEVKVSTM_ 0 0 0 nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5368957519531 2 461.731143 921.447733 -0.045874 -2.1182E-05 0.6188 0.00028572 0.57292 0.00026454 461.7314235347465 43.47 0.80335 40.722 40.452 41.255 -2.7475 39 22 2 0 0 0 0.95515 1 7798 7798 21.747 21.747 1 2862400 11714 12241 7377 7380 11983 11983 -0.01613273828070305 EEVKVSTM 8 Unmodified _EEVKVSTM_ 0 0 0 nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.731143 921.447733 0.37435 0.00017285 0.21918 0.0001012 0.59353 0.00027405 461.73117682130544 41 0.73571 41 40.709 41.444 0 0.19877 -0.00023856 NaN 21.747 37 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1985300 11715 12241 7377 7380 -0.01613273828070305 EEVKVSTM 8 Unmodified _EEVKVSTM_ 0 0 0 nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.731143 921.447733 -0.16408 -7.5762E-05 0.59397 0.00027425 0.42989 0.00019849 461.73137376573357 43.476 0.70732 40.757 40.482 41.189 -2.7191 -0.044169 0.00010754 NaN 21.747 37 19 2 NaN NaN NaN NaN 0 NaN NaN 0 5118400 11716 12241 7377 7380 -0.01613273828070305 EEVKVSTM 8 Unmodified _EEVKVSTM_ 0 0 0 nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.731143 921.447733 -0.089405 -4.1281E-05 0.46902 0.00021656 0.37962 0.00017528 461.73134581553813 43.492 0.75792 40.726 40.427 41.185 -2.7661 -0.075201 -7.8465E-06 NaN 21.747 37 20 2 NaN NaN NaN NaN 0 NaN NaN 0 3278700 11717 12241 7377 7380 -0.01613273828070305 EEVLEQPPPG 10 Unmodified _EEVLEQPPPG_ 0 0 0 REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7716064453125 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 90.942 1 87.164 86.664 87.664 -3.7779 0 0 0 0.22576 1 17406 17406 14.838 0 1 + 11718 16628 7378 7381 11984 11984 -0.013868748644881634 EEVLKKYLQ 9 Unmodified _EEVLKKYLQ_ 0 0 0 ENSG00000110042|ENST00000227451|DTX4;nc|ENSG00000110042|Q9Y2E6-2|DTX4;DTX4|p.T389P|1|0.32|ENSG00000110042|chr11:59191119-59191119|A/C|missense_variant ENSG00000110042|ENST00000227451|DTX4 ENSG00000110042|ENST00000227451|DTX4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3177490234375 2 575.329339 1148.64412 0.29019 0.00016695 1.255 0.00072204 1.5452 0.00088899 575.3299173716695 129.92 1.1406 129.92 129.2 130.34 0 70 32 3 0 0 0 0.64382 1 25661 25661 10.074 2.1638 1 10763000 11719 2555 7379 7382 11985 11985 0.07574854337326542 EEVLLTFK 8 Unmodified _EEVLLTFK_ 0 0 0 nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;nc|ENSG00000173698|Q8IZP9-10|ADGRG2;ADGRG2|p.L25I|1|0.14|ENSG00000173698|chrX:19068762-19068762|G/T|missense_variant;ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant;ADGRG2|p.E516*|1|0.54|ENSG00000173698|chrX:19008000-19008001|-/A|frameshift_variant nc|ENSG00000173698|Q8IZP9-9|ADGRG2 nc|ENSG00000173698|Q8IZP9-9|ADGRG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2645263671875 2 489.778951 977.543348 0.17547 8.5939E-05 0.23889 0.000117 0.41435 0.00020294 489.77901820129455 114.39 1.0202 114.39 113.8 114.82 0 54 28 2 0 0 0 8448 3 22434 22434;22492;22544 36.506 28.149 1 25414000 11720 6306 7380 7383 11986;11987;11988 11986 0.053678223544807224 EEVLLTFK 8 Unmodified _EEVLLTFK_ 0 0 0 nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;nc|ENSG00000173698|Q8IZP9-10|ADGRG2;ADGRG2|p.L25I|1|0.14|ENSG00000173698|chrX:19068762-19068762|G/T|missense_variant;ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant;ADGRG2|p.E516*|1|0.54|ENSG00000173698|chrX:19008000-19008001|-/A|frameshift_variant nc|ENSG00000173698|Q8IZP9-9|ADGRG2 nc|ENSG00000173698|Q8IZP9-9|ADGRG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2653503417969 2 489.778951 977.543348 0.58017 0.00028415 -0.21994 -0.00010772 0.36023 0.00017643 489.77876699020646 118.59 1.0755 113.98 113.38 114.46 -4.6106 67 29 3 0 0 0 8448 2 22748 22748;22793 51.63 15.124 1 32264000 11721 6306 7380 7383 11989;11990 11989 0.053678223544807224 EEVLLTFK 8 Unmodified _EEVLLTFK_ 0 0 0 nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;nc|ENSG00000173698|Q8IZP9-10|ADGRG2;ADGRG2|p.L25I|1|0.14|ENSG00000173698|chrX:19068762-19068762|G/T|missense_variant;ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant;ADGRG2|p.E516*|1|0.54|ENSG00000173698|chrX:19008000-19008001|-/A|frameshift_variant nc|ENSG00000173698|Q8IZP9-9|ADGRG2 nc|ENSG00000173698|Q8IZP9-9|ADGRG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.271240234375 2 489.778951 977.543348 0.18096 8.8629E-05 0.15794 7.7354E-05 0.33889 0.00016598 489.77898901378313 118.39 1.1656 113.98 113.39 114.56 -4.4088 67 32 3 0 0 0 8448 2 22731 22731;22818 36.506 12.716 1 27140000 11722 6306 7380 7383 11991;11992 11991 0.053678223544807224 EEVLQYCQEMY 11 Unmodified _EEVLQYCQEMY_ 0 0 0 nc|ENSG00000084234|Q06481-5|APLP2;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2;APLP2|p.F152Sfs*18|1|0.39|ENSG00000084234|chr11:130120753-130120753|T/-|frameshift_variant nc|ENSG00000084234|Q06481-5|APLP2 nc|ENSG00000084234|Q06481-5|APLP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74267578125 3 478.868711 1433.5843 NaN NaN NaN NaN NaN NaN NaN 18.939 1 17.628 17.128 18.128 -1.3109 0 0 0 0.23689 1 3102 3102 2.8433 1.5136 1 11723 1666 7381 7384 11993 11993 -0.11514572450528249 EEVLQYCQEMY 11 Unmodified _EEVLQYCQEMY_ 0 0 0 nc|ENSG00000084234|Q06481-5|APLP2;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2;APLP2|p.F152Sfs*18|1|0.39|ENSG00000084234|chr11:130120753-130120753|T/-|frameshift_variant nc|ENSG00000084234|Q06481-5|APLP2 nc|ENSG00000084234|Q06481-5|APLP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7292175292969 3 478.868711 1433.5843 NaN NaN NaN NaN NaN NaN NaN 18.982 1 17.671 17.171 18.171 -1.3109 0 0 0 0.23689 1 3111 3111 2.8433 0.21205 1 11724 1666 7381 7384 11994 11994 -0.11514572450528249 EEVLTLLY 8 Unmodified _EEVLTLLY_ 0 0 0 nc|ENSG00000163689|Q6ZVT6|CFAP20DC;ENSG00000163689|ENST00000482387|CFAP20DC;nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC nc|ENSG00000163689|Q6ZVT6|CFAP20DC nc|ENSG00000163689|Q6ZVT6|CFAP20DC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2582092285156 2 490.270958 978.527364 NaN NaN NaN NaN NaN NaN NaN 34.81 1 32.533 32.033 33.033 -2.2766 0 0 0 0.21486 1 6109 6109 10.183 0 1 11725 5453 7382 7385 11995 11995 0.03724116117575704 EEVLTLLY 8 Unmodified _EEVLTLLY_ 0 0 0 nc|ENSG00000163689|Q6ZVT6|CFAP20DC;ENSG00000163689|ENST00000482387|CFAP20DC;nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC nc|ENSG00000163689|Q6ZVT6|CFAP20DC nc|ENSG00000163689|Q6ZVT6|CFAP20DC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2674865722656 2 490.270958 978.527364 NaN NaN NaN NaN NaN NaN NaN 34.902 1 32.625 32.125 33.125 -2.2766 0 0 0 0.21486 1 6126 6126 10.183 0 1 11726 5453 7382 7385 11996 11996 0.03724116117575704 EEVLTLLY 8 Unmodified _EEVLTLLY_ 0 0 0 nc|ENSG00000163689|Q6ZVT6|CFAP20DC;ENSG00000163689|ENST00000482387|CFAP20DC;nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC nc|ENSG00000163689|Q6ZVT6|CFAP20DC nc|ENSG00000163689|Q6ZVT6|CFAP20DC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2724914550781 2 490.270958 978.527364 NaN NaN NaN NaN NaN NaN NaN 54.796 1 51.658 51.158 52.158 -3.1377 0 0 0 0.21486 1 10152 10152 10.183 0 1 11727 5453 7382 7385 11997 11997 0.03724116117575704 EEVMERGGTGP 11 Unmodified _EEVMERGGTGP_ 0 0 0 REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2 REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7168273925781 3 387.845005 1160.51319 NaN NaN NaN NaN NaN NaN NaN 50.355 1 47.474 46.974 47.974 -2.8811 0 0 0 0.22632 1 9555 9555 0.172 0.17062 1 + 11728 14557 7383 7386 11998 11998 -0.06064904373010904 EEVNEVQYG 9 Unmodified _EEVNEVQYG_ 0 0 0 REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1 REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2650146484375 2 533.738011 1065.46147 0.45091 0.00024067 2.2056 0.0011772 2.6565 0.0014179 533.7385506509979 81.057 0.17851 81.057 80.984 81.162 0 6 4 2 0 0 0 0.74655 1 15791 15791 15.847 2.8047 1 898300 + 11729 24887 7384 7387 11999 11999 -0.06864324795287757 EEVPAFGVA 9 Unmodified _EEVPAFGVA_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;DHX9|p.L657Ffs*44|1|0.34|ENSG00000135829|chr1:182876197-182876198|-/T|frameshift_variant;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant;DHX9|p.Q155Lfs*8|1|0.08|ENSG00000135829|chr1:182853404-182853405|-/TG|frameshift_variant ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2404479980469 2 459.732 917.449448 0.3269 0.00015029 -0.72099 -0.00033146 -0.39409 -0.00018118 459.7318081728878 117.34 0.44553 112.73 112.47 112.92 -4.6106 17 12 2 0 0 0 0.49001 1 22502 22502 21.747 5.8995 1 602980 11730 3956 7385 7388 12000 12000 -0.012578967478020786 EEVPAFGVA 9 Unmodified _EEVPAFGVA_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;DHX9|p.L657Ffs*44|1|0.34|ENSG00000135829|chr1:182876197-182876198|-/T|frameshift_variant;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant;DHX9|p.Q155Lfs*8|1|0.08|ENSG00000135829|chr1:182853404-182853405|-/TG|frameshift_variant ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2340087890625 2 459.732 917.449448 0.46263 0.00021269 -0.67552 -0.00031056 -0.21289 -9.7871E-05 459.7316870342313 117.08 0.46559 112.72 112.44 112.91 -4.3585 17 12 2 0 0 0 0.25976 1 22531 22531 19.626 19.626 1 673250 11731 3956 7385 7388 12001 12001 -0.012578967478020786 EEVPAFGVA 9 Unmodified _EEVPAFGVA_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;DHX9|p.L657Ffs*44|1|0.34|ENSG00000135829|chr1:182876197-182876198|-/T|frameshift_variant;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant;DHX9|p.Q155Lfs*8|1|0.08|ENSG00000135829|chr1:182853404-182853405|-/TG|frameshift_variant ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 459.732 917.449448 0.21619 9.939E-05 -1.6841 -0.00077425 -1.4679 -0.00067486 459.7309036039477 112.54 0.17139 112.54 112.46 112.63 0 -0.12628 -0.00082456 NaN 19.626 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 570300 11732 3956 7385 7388 -0.012578967478020786 EEVPGETI 8 Unmodified _EEVPGETI_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant;NEB|p.P541Lfs*16|1|0.49|ENSG00000183091|chr2:151695630-151695630|G/-|frameshift_variant;NEB|p.K715Nfs*8|1|0.06|ENSG00000183091|chr2:151691930-151691930|T/-|frameshift_variant;NEB|p.P928Lfs*29|1|0.38|ENSG00000183091|chr2:151684830-151684830|G/-|frameshift_variant;NEB|p.I31M|1|0.16|ENSG00000183091|chr2:151727892-151727892|A/C|missense_variant nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21661376953125 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 84.786 1 80.877 80.377 81.377 -3.9093 0 0 0 0.21486 1 16119 16119 10.183 0.83596 1 11733 6829 7386 7389 12002 12002 -0.028581933643749835 EEVPLSAE 8 Unmodified _EEVPLSAE_ 0 0 0 ENST00000534350.5_1_8:146277890-146278751:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF ENST00000534350.5_1_8:146277890-146278751:+|nuORF ENST00000534350.5_1_8:146277890-146278751:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2154541015625 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 82.597 1 82.597 82.097 83.097 0 0 0 0 0.21486 1 16096 16096 9.3474 0 1 11734 6781 7387 7390 12003 12003 -0.028581933643749835 EEVPQDKA 8 Unmodified _EEVPQDKA_ 0 0 0 nc|ENSG00000156709|O95831-4|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1;ENSG00000156709|ENST00000287295|AIFM1 nc|ENSG00000156709|O95831-4|AIFM1 nc|ENSG00000156709|O95831-4|AIFM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22332763671875 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 20.984 1 20.984 20.484 21.484 0 0 0 0 0.21323 1 3494 3494 14.582 0 1 11735 5099 7388 7391 12004 12004 -0.026113886158100286 EEVPSLANP 9 Unmodified _EEVPSLANP_ 0 0 0 REV__VWA3A|p.F432L|1|0.2|ENSG00000175267|chr16:22121557-22121557|C/A|missense_variant REV__VWA3A|p.F432L|1|0.2|ENSG00000175267|chr16:22121557-22121557|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7380676269531 2 478.24019 954.465826 -0.30093 -0.00014392 -2.0738 -0.00099178 -2.3747 -0.0011357 478.2402610439546 57.202 1.0433 57.202 56.536 57.58 0 48 29 2 0 0 0 0.34815 1 10894 10894 1.2148 0 1 3565000 + 11736 25539 7389 7392 12005 12005 -0.013228155817046172 EEVQAGVAA 9 Unmodified _EEVQAGVAA_ 0 0 0 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2192687988281 2 437.219257 872.423961 0.16678 7.2918E-05 -0.10627 -4.6462E-05 0.060511 2.6457E-05 437.2191843119361 33.54 1.1188 33.54 33.059 34.178 0 71 31 3 0 0 0 0.041554 4 6153 6101;6104;6151;6153 74.929 39.082 1 5196100 11737 6875 7390 7393 12006;12007;12008;12009 12009 -0.017353712702401936 EEVQAGVAA 9 Unmodified _EEVQAGVAA_ 0 0 0 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2192687988281 2 437.219257 872.423961 -0.48688 -0.00021287 0.5538 0.00024213 0.06692 2.9259E-05 437.2194805166386 35.743 1.1014 33.349 32.915 34.016 -2.3938 62 30 3 0 0 0 0.026664 4 6609 6563;6606;6609;6654 85.272 31.448 1 3754500 11738 6875 7390 7393 12010;12011;12012;12013 12012 -0.017353712702401936 EEVQAGVAA 9 Unmodified _EEVQAGVAA_ 0 0 0 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21917724609375 2 437.219257 872.423961 0.10578 4.6249E-05 -0.085915 -3.7564E-05 0.019865 8.6852E-06 437.21922158631816 35.655 1.2131 33.402 33.09 34.303 -2.2527 74 34 3 0 0 0 0.041554 5 6309 6306;6309;6344;6356;6357 74.929 38.727 1 3794300 11739 6875 7390 7393 12014;12015;12016;12017;12018 12015 -0.017353712702401936 EEVQAGVAA 9 Unmodified _EEVQAGVAA_ 0 0 0 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2277526855469 2 437.219257 872.423961 0.12772 5.584E-05 -0.0054612 -2.3878E-06 0.12225 5.3452E-05 437.2192433086036 35.708 0.94761 33.432 33.037 33.984 -2.2766 57 26 3 0 0 0 0.041554 5 6274 6269;6272;6274;6315;6357 74.929 30.346 1 3242600 11740 6875 7390 7393 12019;12020;12021;12022;12023 12021 -0.017353712702401936 EEVQETVWQP 10 Unmodified _EEVQETVWQP_ 0 0 0 REV__ENST00000368520.1_1_10:135345455-135368187:+|nuORF REV__ENST00000368520.1_1_10:135345455-135368187:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7789306640625 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 154.7 1 149.41 148.91 149.91 -5.2854 0 0 0 0.22588 1 30001 30001 6.7232 0 1 + 11741 20941 7391 7394 12024 12024 -0.039961048070381366 EEVQGMLLY 9 Unmodified _EEVQGMLLY_ 0 0 0 REV__ENST00000472348.1_1_7:100204024-100205723:+|nuORF REV__ENST00000472348.1_1_7:100204024-100205723:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2667846679688 2 541.26535 1080.51615 0.21535 0.00011656 2.139 0.0011578 2.3543 0.0012743 541.2665361071357 128.26 0.57018 123.44 123.31 123.88 -4.817 20 15 2 0 0 0 0.62102 1 24677 24677 11.64 0.81637 1 1961700 + 11742 15043 7392 7395 12025 12025 -0.020890292481908546 EEVQKEGP 8 Unmodified _EEVQKEGP_ 0 0 0 SLC4A1AP|p.Y154Tfs*16|1|0.2|ENSG00000163798|chr2:27664206-27664206|C/-|frameshift_variant;SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant;SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP SLC4A1AP|p.Y154Tfs*16|1|0.2|ENSG00000163798|chr2:27664206-27664206|C/-|frameshift_variant SLC4A1AP|p.Y154Tfs*16|1|0.2|ENSG00000163798|chr2:27664206-27664206|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2246398925781 2 458.224539 914.434526 -0.11153 -5.1107E-05 0.32918 0.00015084 0.21765 9.973E-05 458.22479740334745 41.964 0.56429 39.313 38.9 39.464 -2.651 27 15 2 0 0 0 0.6199 1 7534 7534 20.871 0.41758 1 734300 11743 5464 7393 7396 12026 12026 -0.0261138861579866 EEVQTKAI 8 Unmodified _EEVQTKAI_ 0 0 0 NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2451171875 2 459.250557 916.486562 -0.059742 -2.7436E-05 -0.97795 -0.00044913 -1.0377 -0.00047656 459.2494159399475 61.368 0.48304 58.407 58.205 58.688 -2.9614 23 13 3 0 0 0 0.56049 1 11808 11808 24.674 1.5255 1 1291800 11744 5523 7394 7397 12027 12027 0.024977747979505693 EEVQTKAI 8 Unmodified _EEVQTKAI_ 0 0 0 NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.250557 916.486562 0.1936 8.8912E-05 -3.3156 -0.0015227 -3.122 -0.0014338 459.248662443016 61.722 0.48348 58.482 58.206 58.69 -3.2395 -0.045544 -0.00089358 NaN 24.674 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1099500 11745 5523 7394 7397 0.024977747979505693 EEVQYLIPP 9 Unmodified _EEVQYLIPP_ 0 0 0 ENSG00000128891|ENST00000416810|CCDC32;nc|ENSG00000128891|Q9BV29-2|CCDC32 ENSG00000128891|ENST00000416810|CCDC32 ENSG00000128891|ENST00000416810|CCDC32 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7839965820312 2 544.28714 1086.55973 0.26142 0.00014229 -0.8252 -0.00044915 -0.56378 -0.00030686 544.2866144621651 141.07 1.7672 136.42 135.62 137.38 -4.6493 66 49 2 0 0 0 0.52242 1 27768 27768 36.127 21.545 1 4561800 11746 3548 7395 7398 12028 12028 0.019909035205728287 EEVQYLIPP 9 Unmodified _EEVQYLIPP_ 0 0 0 ENSG00000128891|ENST00000416810|CCDC32;nc|ENSG00000128891|Q9BV29-2|CCDC32 ENSG00000128891|ENST00000416810|CCDC32 ENSG00000128891|ENST00000416810|CCDC32 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 544.28714 1086.55973 0.35637 0.00019397 -0.7263 -0.00039532 -0.36994 -0.00020135 544.2865571672763 141.11 2.382 136.24 135.35 137.73 -4.8677 -0.023801 0.00027321 NaN 36.127 82 67 2 NaN NaN NaN NaN 0 NaN NaN 0 2981000 11747 3548 7395 7398 0.019909035205728287 EEVRFPVS 8 Unmodified _EEVRFPVS_ 0 0 0 ENSG00000172375|ENST00000648610|C2CD2L;nc|ENSG00000172375|O14523-2|C2CD2L;ENST00000529874.5_1_11:118980840-118984381:+|nuORF ENSG00000172375|ENST00000648610|C2CD2L ENSG00000172375|ENST00000648610|C2CD2L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76611328125 2 481.750724 961.486896 NaN NaN NaN NaN NaN NaN NaN 80.477 1 76.637 76.137 77.137 -3.8392 0 0 0 0.19492 1 15275 15275 26.341 5.8877 1 11748 6215 7396 7399 12029 12029 0.004611945178112364 EEVRKYIE 8 Unmodified _EEVRKYIE_ 0 0 0 tr|U7SUS8|U7SUS8_FUSNUGH3auxin-responsivepromoterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00992PE=4SV=1 tr|U7SUS8|U7SUS8_FUSNUGH3auxin-responsivepromoterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00992PE=4SV=1 tr|U7SUS8|U7SUS8_FUSNUGH3auxin-responsivepromoterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00992PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2733154296875 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 131.95 1 127.15 126.65 127.65 -4.799 0 0 0 0.21452 1 25401 25401 13.508 0 1 11749 26212 7397 7400 12030 12030 0.020531352350417365 EEVRQSVTP 9 Unmodified _EEVRQSVTP_ 0 0 0 nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC nc|ENSG00000066136|Q13952-3|NFYC nc|ENSG00000066136|Q13952-3|NFYC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2676391601562 2 522.769645 1043.52474 0.24849 0.0001299 -0.4269 -0.00022317 -0.17841 -9.3266E-05 522.769504803456 27.43 0.89514 27.43 26.939 27.835 0 65 25 3 0 0 0 0.054822 1 4829 4829 76.825 49.196 1 6079800 11750 12227 7398 7401 12031 12031 0.004716607126283634 EEVRQSVTP 9 Unmodified _EEVRQSVTP_ 0 0 0 nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC nc|ENSG00000066136|Q13952-3|NFYC nc|ENSG00000066136|Q13952-3|NFYC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2590942382812 2 522.769645 1043.52474 0.42851 0.00022401 -0.38801 -0.00020284 0.040499 2.1172E-05 522.7693450436872 29.452 1.0198 27.495 26.912 27.932 -1.9561 65 28 3 0 0 0 0.31673 1 5314 5314 39.95 30.567 1 6169700 11751 12227 7398 7401 12032 12032 0.004716607126283634 EEVRQSVTP 9 Unmodified _EEVRQSVTP_ 0 0 0 nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC nc|ENSG00000066136|Q13952-3|NFYC nc|ENSG00000066136|Q13952-3|NFYC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2586059570312 2 522.769645 1043.52474 -0.31888 -0.0001667 0.37594 0.00019653 0.057065 2.9832E-05 522.7697546262771 29.279 1.0129 27.387 26.843 27.856 -1.8928 66 28 3 0 0 0 0.30909 1 5015 5015 49.554 18.918 1 5876400 11752 12227 7398 7401 12033 12033 0.004716607126283634 EEVRQSVTP 9 Unmodified _EEVRQSVTP_ 0 0 0 nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC nc|ENSG00000066136|Q13952-3|NFYC nc|ENSG00000066136|Q13952-3|NFYC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2658081054688 2 522.769645 1043.52474 0.51921 0.00027143 -0.5596 -0.00029254 -0.040387 -2.1113E-05 522.7693071801134 29.408 0.97383 27.334 26.822 27.796 -2.0743 66 27 3 0 0 0 0.10265 1 4992 4992 72.968 40.662 1 4607700 11753 12227 7398 7401 12034 12034 0.004716607126283634 EEVSNTNK 8 Unmodified _EEVSNTNK_ 0 0 0 REV__ENSG00000174718|ENST00000312561|RESF1 REV__ENSG00000174718|ENST00000312561|RESF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2326965332031 2 460.719621 919.42469 NaN NaN NaN NaN NaN NaN NaN 142.15 1 137.25 136.75 137.75 -4.8982 0 0 0 0.21171 1 27426 27426 15.847 2.3393 1 + 11754 18426 7399 7402 12035 12035 -0.03824576621173037 EEVSQGLLS 9 Unmodified _EEVSQGLLS_ 0 0 0 nc|ENSG00000161888|Q8NBT2-2|SPC24;ENSG00000161888|ENST00000592540|SPC24 nc|ENSG00000161888|Q8NBT2-2|SPC24 nc|ENSG00000161888|Q8NBT2-2|SPC24 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24603271484375 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 54.587 1 51.703 51.203 52.203 -2.8837 0 0 0 0.22251 1 10423 10423 16.942 2.3606 1 11755 5305 7400 7403 12036 12036 -0.005428329272717747 EEVSVTVKA 9 Unmodified _EEVSVTVKA_ 0 0 0 nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant nc|ENSG00000141367|Q00610-2|CLTC nc|ENSG00000141367|Q00610-2|CLTC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7651672363281 2 481.263665 960.512776 0.1386 6.6702E-05 0.61169 0.00029438 0.75028 0.00036108 481.26403897476996 51.134 0.45992 51.134 50.775 51.235 0 24 12 3 0 0 0 0.12612 1 9648 9648 47.594 19.966 1 5767000 11756 4356 7401 7404 12037 12037 0.03094043969440463 EEVSVTVKA 9 Unmodified _EEVSVTVKA_ 0 0 0 nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant nc|ENSG00000141367|Q00610-2|CLTC nc|ENSG00000141367|Q00610-2|CLTC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7652282714844 2 481.263665 960.512776 -0.18768 -9.0324E-05 0.82235 0.00039577 0.63466 0.00030544 481.2640723865913 53.768 0.97116 50.884 50.317 51.288 -2.8837 65 27 4 0 0 0 0.051332 4 10247 10199;10247;10251;10329 70.332 24.632 1 12351000 11757 4356 7401 7404 12038;12039;12040;12041 12039 0.03094043969440463 EEVSVTVKA 9 Unmodified _EEVSVTVKA_ 0 0 0 nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant nc|ENSG00000141367|Q00610-2|CLTC nc|ENSG00000141367|Q00610-2|CLTC MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 481.263665 960.512776 -0.10616 -5.109E-05 2.1501 0.0010348 2.044 0.00098369 481.26471340228846 54.16 1.0865 51.023 50.501 51.588 -3.1377 0.047541 0.00070703 NaN 70.332 59 30 3 NaN NaN NaN NaN 0 NaN NaN 0 7009400 11758 4356 7401 7404 0.03094043969440463 EEVTAKIKAY 10 Unmodified _EEVTAKIKAY_ 0 0 0 REV__ENST00000508482.5_1_17:48797176-48828101:+|nuORF REV__ENST00000508482.5_1_17:48797176-48828101:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3167724609375 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 76.859 1 73.093 72.593 73.593 -3.7664 0 0 0 0.22588 1 14560 14560 7.2892 0 1 + 11759 15142 7402 7405 12042 12042 0.05410263957674033 EEVTKVTKF 9 Unmodified _EEVTKVTKF_ 0 0 0 CON__Q2KJC7;ENST00000474646.1_1_13:38139628-38143902:-|nuORF;ENST00000497145.1_1_13:38143434-38144816:-|nuORF;nc|ENSG00000133110|Q15063-6|POSTN;nc|ENSG00000133110|Q15063-2|POSTN;nc|ENSG00000133110|Q15063-9|POSTN;nc|ENSG00000133110|Q15063-5|POSTN;ENSG00000133110|ENST00000379747|POSTN CON__Q2KJC7 CON__Q2KJC7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.72296142578125 3 360.869368 1079.58628 -0.27321 -9.8594E-05 0.71489 0.00025798 0.44168 0.00015939 360.86944221116886 92.785 0.79865 88.86 88.618 89.417 -3.9251 30 22 2 0 0 0 0.73309 1 18179 18179 2.7352 0.23671 1 1300100 + 11760 687 7403 7406 12043 12043 0.04966592411892634 EEVTKVTKF 9 Unmodified _EEVTKVTKF_ 0 0 0 CON__Q2KJC7;ENST00000474646.1_1_13:38139628-38143902:-|nuORF;ENST00000497145.1_1_13:38143434-38144816:-|nuORF;nc|ENSG00000133110|Q15063-6|POSTN;nc|ENSG00000133110|Q15063-2|POSTN;nc|ENSG00000133110|Q15063-9|POSTN;nc|ENSG00000133110|Q15063-5|POSTN;ENSG00000133110|ENST00000379747|POSTN CON__Q2KJC7 CON__Q2KJC7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 360.869368 1079.58628 0.24938 8.9993E-05 0.070927 2.5595E-05 0.32031 0.00011559 360.86940743669805 93.065 0.32133 88.921 88.659 88.98 -4.1435 0.017858 -0.00065408 NaN 2.7352 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 919110 + 11761 687 7403 7406 0.04966592411892634 EEVTKVTKF 9 Unmodified _EEVTKVTKF_ 0 0 0 CON__Q2KJC7;ENST00000474646.1_1_13:38139628-38143902:-|nuORF;ENST00000497145.1_1_13:38143434-38144816:-|nuORF;nc|ENSG00000133110|Q15063-6|POSTN;nc|ENSG00000133110|Q15063-2|POSTN;nc|ENSG00000133110|Q15063-9|POSTN;nc|ENSG00000133110|Q15063-5|POSTN;ENSG00000133110|ENST00000379747|POSTN CON__Q2KJC7 CON__Q2KJC7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 360.869368 1079.58628 -0.60253 -0.00021743 1.0841 0.00039121 0.48156 0.00017378 360.86959029547876 92.774 0.47295 88.93 88.65 89.123 -3.844 0.026109 0.00044277 NaN 2.7352 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 995430 + 11762 687 7403 7406 0.04966592411892634 EEVTYAQL 8 Unmodified _EEVTYAQL_ 0 0 0 nc|ENSG00000167633|P43629-2|KIR3DL1;ENSG00000167633|ENST00000391728|KIR3DL1 nc|ENSG00000167633|P43629-2|KIR3DL1 nc|ENSG00000167633|P43629-2|KIR3DL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 476.73291015625 2 476.73474 951.454927 NaN NaN NaN NaN NaN NaN NaN 68.687 1 65.151 64.651 65.651 -3.5362 0 0 0 0.19492 1 12916 12916 26.341 0 1 11763 5825 7404 7407 12044 12044 -0.022742179560054865 EEVVQEMDD 9 Unmodified _EEVVQEMDD_ 0 0 0 REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7715454101562 2 547.221336 1092.42812 0.35256 0.00019293 -0.23377 -0.00012793 0.11878 6.5E-05 547.221223756854 64.051 0.59478 60.794 60.534 61.129 -3.2567 21 16 2 0 0 0 0.76271 1 11991 11991 20.454 3.5113 1 1510300 + 11764 16584 7405 7408 12045 12045 -0.1143969462948462 EEVWQVAT 8 Unmodified _EEVWQVAT_ 0 0 0 nc|ENSG00000235944|A8K554|ZNF815P nc|ENSG00000235944|A8K554|ZNF815P nc|ENSG00000235944|A8K554|ZNF815P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2349548339844 2 481.234907 960.455261 0.0069781 3.3581E-06 0.61895 0.00029786 0.62593 0.00030122 481.2349449797452 67.259 0.2811 64.15 64.001 64.283 -3.1086 14 7 3 0 0 0 0.40661 1 13014 13014 32.117 5.2333 1 515100 11765 12613 7406 7409 12046 12046 -0.02654798236142142 EEVWSRIY 8 Unmodified _EEVWSRIY_ 0 0 0 REV__ENST00000335154.9_1_12:50038186-50038435:-|nuORF REV__ENST00000335154.9_1_12:50038186-50038435:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2713623046875 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 21.9 1 20.426 19.926 20.926 -1.4742 0 0 0 0.21486 1 3723 3723 10.183 0 1 + 11766 20651 7407 7410 12047 12047 -0.01303133936426093 EEVYELTA 8 Unmodified _EEVYELTA_ 0 0 0 REV__nc|ENSG00000143450|Q9UMX2-2|OAZ3 REV__nc|ENSG00000143450|Q9UMX2-2|OAZ3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7300109863281 2 477.226748 952.438943 0.29676 0.00014162 -1.3709 -0.00065424 -1.0742 -0.00051262 477.22606702816955 29.055 0.94778 27.207 26.747 27.695 -1.8488 78 26 4 0 0 0 0.70613 1 4937 4937 13.508 3.3245 1 14122000 + 11767 16729 7408 7411 12048 12048 -0.03917924192899136 EEWARFLQ 8 Unmodified _EEWARFLQ_ 0 0 0 REV__ENSG00000140511|ENST00000359595|HAPLN3 REV__ENSG00000140511|ENST00000359595|HAPLN3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20123291015625 3 360.182058 1077.52434 NaN NaN NaN NaN NaN NaN NaN 23.181 1 21.392 20.892 21.892 -1.7886 0 0 0 0.21486 1 3716 3716 3.2813 1.7994 1 + 11768 16581 7409 7412 12049 12049 -0.011317142165808036 EEWAVLDP 8 Unmodified _EEWAVLDP_ 0 0 0 ZNF20|p.L23V|1|0.21|ENSG00000132010|chr19:12135841-12135841|A/C|missense_variant ZNF20|p.L23V|1|0.21|ENSG00000132010|chr19:12135841-12135841|A/C|missense_variant ZNF20|p.L23V|1|0.21|ENSG00000132010|chr19:12135841-12135841|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23272705078125 2 479.729458 957.444362 -0.16468 -7.9002E-05 -1.0276 -0.00049299 -1.1923 -0.00057199 479.72800942617147 55.583 1.2375 55.583 54.914 56.151 0 92 34 4 0 0 0 0.70613 1 10569 10569 13.508 13.508 1 15239000 11769 26605 7410 7413 12050 12050 -0.03606200610443011 EEWDTWYM 8 Unmodified _EEWDTWYM_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1;REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;REV__LRP1|p.D1283Ifs*50|1|0.09|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant;REV__LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant REV__ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7131652832031 3 387.151547 1158.43281 -0.095082 -3.6811E-05 -0.90599 -0.00035075 -1.0011 -0.00038756 387.1511718324852 22.098 0.45437 22.098 21.875 22.329 0 30 12 5 0 0 0 8448 1 3707 3707 0.0082765 0 1 2197000 + 11770 15726;18047;23808;23811 7411 7414 12051 12051 -0.14006765696080947 EEWECEQE 8 Unmodified _EEWECEQE_ 0 0 0 REV__ENSG00000096696|ENST00000379802|DSP;REV__nc|ENSG00000178209|Q15149-7|PLEC REV__nc|ENSG00000178209|Q15149-7|PLEC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2693481445312 2 541.192579 1080.37061 NaN NaN NaN NaN NaN NaN NaN 117.54 1 113.04 112.54 113.54 -4.502 0 0 0 0.21486 1 23170 23170 9.3474 0 1 + 11771 18594;14625 7412 7415 12052 12052 -0.1663653683508528 EEWHFDVPW 9 Unmodified _EEWHFDVPW_ 0 0 0 REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7704467773438 2 622.772188 1243.52982 NaN NaN NaN NaN NaN NaN NaN 51.62 1 48.737 48.237 49.237 -2.8824 0 0 0 0.22251 1 9809 9809 16.942 1.0951 1 + 11772 19534 7413 7416 12053 12053 -0.08220035424778871 EEWHGHVTA 9 Unmodified _EEWHGHVTA_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.273193359375 2 533.241055 1064.46756 0.64874 0.00034594 -0.58323 -0.000311 0.06551 3.4933E-05 533.240747835821 31.914 0.80331 29.888 29.589 30.392 -2.0264 82 22 5 0 0 0 0.07121 1 5609 5609 78.149 52.75 1 78106000 11773 6292 7414 7417 12054 12054 -0.0620976177308421 EEWHGHVTA 9 Unmodified _EEWHGHVTA_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.263916015625 2 533.241055 1064.46756 0.44315 0.00023631 -4.0588 -0.0021643 -3.6157 -0.001928 533.238952665435 33.839 0.56042 31.623 31.319 31.879 -2.2158 18 15 2 0 0 0 0.8319 1 5866 5866 12.532 2.4576 1 321880 11774 6292 7414 7417 12055 12055 -0.0620976177308421 EEWHGHVTA 9 Unmodified _EEWHGHVTA_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.241055 1064.46756 0.13731 7.3218E-05 -0.15189 -8.0992E-05 -0.014578 -7.7735E-06 533.2409862455088 29.842 0.69335 29.842 29.541 30.235 0 -0.033902 0.00017399 NaN 78.149 73 19 5 NaN NaN NaN NaN 0 NaN NaN 0 86593000 11775 6292 7414 7417 -0.0620976177308421 EEWHGHVTA 9 Unmodified _EEWHGHVTA_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 533.241055 1064.46756 0.28611 0.00015257 -0.23715 -0.00012646 0.048956 2.6105E-05 533.2409342465344 32.108 0.74284 29.878 29.551 30.294 -2.2305 0.0019426 8.3052E-05 NaN 78.149 71 20 5 NaN NaN NaN NaN 0 NaN NaN 0 72649000 11776 6292 7414 7417 -0.0620976177308421 EEWHGHVTA 9 Unmodified _EEWHGHVTA_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 533.241055 1064.46756 0.52312 0.00027895 -0.42714 -0.00022777 0.09598 5.1181E-05 533.2407843756189 32.044 0.90119 29.896 29.551 30.452 -2.1483 0.019909 -0.00011957 NaN 78.149 87 25 5 NaN NaN NaN NaN 0 NaN NaN 0 53713000 11777 6292 7414 7417 -0.0620976177308421 EEWPVPSL 8 Unmodified _EEWPVPSL_ 0 0 0 REV__ZSCAN22|p.S61Lfs*67|1|0.51|ENSG00000182318|chr19:58334983-58334983|T/-|frameshift_variant REV__ZSCAN22|p.S61Lfs*67|1|0.51|ENSG00000182318|chr19:58334983-58334983|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74273681640625 2 478.739825 955.465098 NaN NaN NaN NaN NaN NaN NaN 76.778 1 73.012 72.512 73.512 -3.7664 0 0 0 0.10184 1 14544 14544 44.407 10.305 1 + 11778 18774 7415 7418 12056 12056 -0.01441610230756396 EEWRLAAS 8 Unmodified _EEWRLAAS_ 0 0 0 REV__ENSG00000206113|ENST00000635017|CFAP99 REV__ENSG00000206113|ENST00000635017|CFAP99 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23297119140625 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 19.925 1 19.925 19.425 20.425 0 0 0 0 0.20896 1 3277 3277 18.135 7.3111 1 + 11779 19615 7416 7419 12057 12057 -0.015319761420073519 EEWSMYQN 8 Unmodified _EEWSMYQN_ 0 0 0 REV__tr|U7SF19|U7SF19_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02364PE=4SV=1 REV__tr|U7SF19|U7SF19_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02364PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.792724609375 2 543.713482 1085.41241 NaN NaN NaN NaN NaN NaN NaN 133.8 1 128.98 128.48 129.48 -4.8175 0 0 0 0.21486 1 25754 25754 9.3474 0.75416 1 + 11780 24848 7417 7420 12058 12058 -0.12687936355882812 EEWSSEWRA 9 Unmodified _EEWSSEWRA_ 0 0 0 REV__nc|ENSG00000121933|P0DMS9|TMIGD3 REV__nc|ENSG00000121933|P0DMS9|TMIGD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.259521484375 2 590.256902 1178.49925 NaN NaN NaN NaN NaN NaN NaN 28.365 1 28.365 27.865 28.865 0 0 0 0 0.23508 1 5035 5035 7.2892 1.5574 1 + 11781 24020 7418 7421 12059 12059 -0.0828581380981177 EEWTNCKVA 9 Unmodified _EEWTNCKVA_ 0 0 0 nc|ENSG00000164037|Q4ZJI4-2|SLC9B1;nc|ENSG00000164037|Q4ZJI4-3|SLC9B1 nc|ENSG00000164037|Q4ZJI4-2|SLC9B1 nc|ENSG00000164037|Q4ZJI4-2|SLC9B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.28076171875 2 540.244949 1078.47534 0.21887 0.00011825 0.071219 3.8476E-05 0.29009 0.00015672 540.2449540492732 100.2 0.97649 96.044 95.519 96.495 -4.1594 57 27 3 0 0 0 0.62102 2 19682 19682;19693 11.64 3.047 1 4842900 11782 12421 7419 7422 12060;12061 12060 -0.06075370567828031 EEWTNCKVA 9 Unmodified _EEWTNCKVA_ 0 0 0 nc|ENSG00000164037|Q4ZJI4-2|SLC9B1;nc|ENSG00000164037|Q4ZJI4-3|SLC9B1 nc|ENSG00000164037|Q4ZJI4-2|SLC9B1 nc|ENSG00000164037|Q4ZJI4-2|SLC9B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2771606445312 2 540.244949 1078.47534 0.37102 0.00020044 -0.009751 -5.268E-06 0.36127 0.00019517 540.2449236846351 100.26 0.78312 95.962 95.579 96.362 -4.297 55 22 3 0 0 0 0.6329 1 19146 19146 10.824 0.75 1 4552500 11783 12421 7419 7422 12062 12062 -0.06075370567828031 EEWTNCKVA 9 Unmodified _EEWTNCKVA_ 0 0 0 nc|ENSG00000164037|Q4ZJI4-2|SLC9B1;nc|ENSG00000164037|Q4ZJI4-3|SLC9B1 nc|ENSG00000164037|Q4ZJI4-2|SLC9B1 nc|ENSG00000164037|Q4ZJI4-2|SLC9B1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.244949 1078.47534 0.18177 9.8198E-05 -0.25782 -0.00013929 -0.076055 -4.1088E-05 540.2449480675997 95.994 0.76006 95.994 95.594 96.354 0 -0.011385 -0.00024854 NaN 11.64 37 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3035900 11784 12421 7419 7422 -0.06075370567828031 EEWTNCKVA 9 Unmodified _EEWTNCKVA_ 0 0 0 nc|ENSG00000164037|Q4ZJI4-2|SLC9B1;nc|ENSG00000164037|Q4ZJI4-3|SLC9B1 nc|ENSG00000164037|Q4ZJI4-2|SLC9B1 nc|ENSG00000164037|Q4ZJI4-2|SLC9B1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.244949 1078.47534 0.35202 0.00019018 0.016662 9.0016E-06 0.36868 0.00019918 540.2448580021014 100.01 0.82414 96.021 95.557 96.381 -3.9895 0.015626 4.8034E-05 NaN 11.64 42 23 2 NaN NaN NaN NaN 0 NaN NaN 0 4272300 11785 12421 7419 7422 -0.06075370567828031 EEWTPEPPP 9 Unmodified _EEWTPEPPP_ 0 0 0 REV__ENST00000467157.1_1_3:122864388-122880365:+|nuORF REV__ENST00000467157.1_1_3:122864388-122880365:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2594604492188 2 541.245472 1080.47639 NaN NaN NaN NaN NaN NaN NaN 77.526 1 73.76 73.26 74.26 -3.7664 0 0 0 0.23411 1 14688 14688 13.508 0.97634 1 + 11786 14188 7420 7423 12063 12063 -0.06062832927273121 EEWTPRPRHLY 11 Unmodified _EEWTPRPRHLY_ 0 0 0 REV__FAM133A|p.N35H|1|0.17|ENSG00000179083|chrX:93709522-93709522|A/C|missense_variant REV__FAM133A|p.N35H|1|0.17|ENSG00000179083|chrX:93709522-93709522|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3758544921875 2 742.375675 1482.7368 NaN NaN NaN NaN NaN NaN NaN 162.6 1 157.45 156.95 157.95 -5.1438 0 0 0 0.22632 1 31598 31598 0.172 0 1 + 11787 23512 7421 7424 12064 12064 0.014737521234337692 EEWTSDCDP 9 Unmodified _EEWTSDCDP_ 0 0 0 REV__nc|ENSG00000060491|Q9NZT2-2|OGFR REV__nc|ENSG00000060491|Q9NZT2-2|OGFR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2736206054688 2 541.192579 1080.37061 0.51915 0.00028096 -4.0873 -0.002212 -3.5681 -0.001931 541.6917847011428 42.217 0.098705 42.217 42.15 42.249 0 4 2 2 0 0 0 0.87258 1 7886 7886 7.9102 2.1497 1 316940 + 11788 14143 7422 7425 12065 12065 -0.1663653683508528 EEYDIRTQV 9 Unmodified _EEYDIRTQV_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3123779296875 2 576.78021 1151.54587 0.17204 9.9226E-05 0.16571 9.5578E-05 0.33774 0.0001948 576.7802588398409 71.331 0.77124 71.331 71.006 71.777 0 69 21 4 0 0 0 5.0481E-07 1 13794 13794 160.69 57.336 1 45622000 11789 7767 7423 7426 12066 12066 -0.023843739785206708 EEYDIRTQV 9 Unmodified _EEYDIRTQV_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3225708007812 2 576.78021 1151.54587 -0.035142 -2.0269E-05 0.23659 0.00013646 0.20145 0.00011619 576.7802978480901 74.958 0.7664 71.594 71.235 72.002 -3.3643 68 21 4 0 0 0 0.18701 1 14574 14574 59.368 31.74 1 43898000 11790 7767 7423 7426 12067 12067 -0.023843739785206708 EEYDIRTQV 9 Unmodified _EEYDIRTQV_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3138427734375 2 576.78021 1151.54587 0.25757 0.00014856 0.21743 0.00012541 0.475 0.00027397 576.7802837802266 75.349 1.0392 71.626 70.993 72.033 -3.7227 78 29 4 0 0 0 2.6438E-24 1 14222 14222 168.54 75.884 1 40403000 11791 7767 7423 7426 12068 12068 -0.023843739785206708 EEYDIRTQV 9 Unmodified _EEYDIRTQV_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3187255859375 2 576.78021 1151.54587 0.28815 0.0001662 0.12339 7.1169E-05 0.41154 0.00023737 576.7802519872926 75.228 0.87 71.595 71.23 72.1 -3.6337 72 24 4 0 0 0 0.00012336 1 14335 14335 125.04 49.277 1 33430000 11792 7767 7423 7426 12069 12069 -0.023843739785206708 EEYEKKDNF 9 Unmodified _EEYEKKDNF_ 0 0 0 ENSG00000118160|ENST00000236877|SLC8A2 ENSG00000118160|ENST00000236877|SLC8A2 ENSG00000118160|ENST00000236877|SLC8A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 601.2727661132812 2 601.272218 1200.52988 2.0584 0.0012377 -1.635 -0.00098308 0.42343 0.0002546 601.2711679644857 24.991 0.31173 23.343 23.131 23.442 -1.6482 12 8 2 0 0 0 0.57447 1 4351 4351 14.838 3.198 1 508800 11793 3018 7424 7427 12070 12070 -0.06236080215444417 EEYEQLGKS 9 Unmodified _EEYEQLGKS_ 0 0 0 REV__nc|ENSG00000089250|P29475-2|NOS1 REV__nc|ENSG00000089250|P29475-2|NOS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.265380859375 2 541.753661 1081.49277 0.35236 0.00019089 -0.068101 -3.6894E-05 0.28426 0.000154 541.7535627437982 117.03 1.0441 112.54 112.04 113.08 -4.486 99 29 4 0 0 0 0.57447 1 23002 23002 14.838 5.4908 1 34694000 + 11794 14528 7425 7428 12071 12071 -0.044717517611843505 EEYERIVNP 9 Unmodified _EEYERIVNP_ 0 0 0 nc|ENSG00000119760|O94864-4|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L nc|ENSG00000119760|O94864-4|SUPT7L nc|ENSG00000119760|O94864-4|SUPT7L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3187255859375 2 574.782753 1147.55095 -0.13475 -7.745E-05 -0.045417 -2.6105E-05 -0.18016 -0.00010355 574.7827098847431 70.109 1.1632 66.859 66.262 67.425 -3.2492 93 32 4 0 0 0 0.54354 2 13607 13607;13618 16.942 5.302 1 11546000 11795 3100 7426 7429 12072;12073 12072 -0.016920701159051532 EEYERIVNP 9 Unmodified _EEYERIVNP_ 0 0 0 nc|ENSG00000119760|O94864-4|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L nc|ENSG00000119760|O94864-4|SUPT7L nc|ENSG00000119760|O94864-4|SUPT7L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3369750976562 2 574.782753 1147.55095 0.44642 0.00025659 -0.49346 -0.00028363 -0.047045 -2.7041E-05 574.7824242272844 70.487 1.1241 66.907 66.45 67.574 -3.5798 89 31 4 0 0 0 0.60805 1 13300 13300 12.532 2.4576 1 10617000 11796 3100 7426 7429 12074 12074 -0.016920701159051532 EEYFMRETV 9 Unmodified _EEYFMRETV_ 0 0 0 ST3GAL2-COG4|3|fusion;ST3GAL2-COG4|2|fusion;ENST00000526700.5_1_16:70530266-70542451:-|nuORF;nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4 ST3GAL2-COG4|3|fusion ST3GAL2-COG4|3|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2911376953125 2 602.271164 1202.52777 0.51696 0.00031135 0.22037 0.00013272 0.73733 0.00044407 602.2713436733518 98.214 0.59361 98.214 97.913 98.506 0 36 16 3 0 0 0 6.9608E-05 2 19232 19232;19284 128.93 72.755 1 5683200 11797 25791 7427 7430 12075;12076 12075 -0.06538832224896396 EEYFMRETV 9 Unmodified _EEYFMRETV_ 0 0 0 ST3GAL2-COG4|3|fusion;ST3GAL2-COG4|2|fusion;ENST00000526700.5_1_16:70530266-70542451:-|nuORF;nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4 ST3GAL2-COG4|3|fusion ST3GAL2-COG4|3|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2910766601562 2 602.271164 1202.52777 0.97429 0.00058678 -0.64603 -0.00038908 0.32826 0.0001977 602.2708367748202 102.64 0.64076 98.457 98.13 98.771 -4.1861 46 17 3 0 0 0 6.9608E-05 4 20145 20115;20145;20167;20201 128.93 68.859 1 6375000 11798 25791 7427 7430 12077;12078;12079;12080 12078 -0.06538832224896396 EEYFMRETV 9 Unmodified _EEYFMRETV_ 0 0 0 ST3GAL2-COG4|3|fusion;ST3GAL2-COG4|2|fusion;ENST00000526700.5_1_16:70530266-70542451:-|nuORF;nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4 ST3GAL2-COG4|3|fusion ST3GAL2-COG4|3|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.300048828125 2 602.271164 1202.52777 0.63482 0.00038233 -0.1633 -9.8351E-05 0.47152 0.00028398 602.2710684961635 102.62 0.69609 98.299 98.01 98.706 -4.3208 50 19 3 0 0 0 0.0024928 4 19693 19600;19693;19705;19707 117.76 57.687 1 8538800 11799 25791 7427 7430 12081;12082;12083;12084 12082 -0.06538832224896396 EEYFMRETV 9 Unmodified _EEYFMRETV_ 0 0 0 ST3GAL2-COG4|3|fusion;ST3GAL2-COG4|2|fusion;ENST00000526700.5_1_16:70530266-70542451:-|nuORF;nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4 ST3GAL2-COG4|3|fusion ST3GAL2-COG4|3|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.296142578125 2 602.271164 1202.52777 0.59584 0.00035886 -0.071337 -4.2964E-05 0.52451 0.00031589 602.2711128651471 102.4 0.76133 98.38 97.972 98.733 -4.0212 49 21 3 0 0 0 1.4163E-11 1 19675 19675 160.69 75.048 1 6732800 11800 25791 7427 7430 12085 12085 -0.06538832224896396 EEYGEFYKS 9 Unmodified _EEYGEFYKS_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.31640625 2 576.248212 1150.48187 NaN NaN NaN NaN NaN NaN NaN 66.824 1 63.327 62.827 63.827 -3.4965 0 0 0 0.22519 1 12530 12530 16.149 1.3108 1 11801 1874;1620 7428 7431 12086 12086 -0.08735154135479206 EEYGEFYKS 9 Unmodified _EEYGEFYKS_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3290405273438 2 576.248212 1150.48187 NaN NaN NaN NaN NaN NaN NaN 66.903 1 63.407 62.907 63.907 -3.4965 0 0 0 0.18489 1 12546 12546 17.113 12.216 1 11802 1874;1620 7428 7431 12087 12087 -0.08735154135479206 EEYGEFYKS 9 Unmodified _EEYGEFYKS_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3290405273438 2 576.248212 1150.48187 NaN NaN NaN NaN NaN NaN NaN 66.919 1 63.423 62.923 63.923 -3.4965 0 0 0 0.22519 1 12548 12548 16.149 1.3108 1 11803 1874;1620 7428 7431 12088 12088 -0.08735154135479206 EEYHLGIG 8 Unmodified _EEYHLGIG_ 0 0 0 nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1 nc|ENSG00000186635|Q96P48-3|ARAP1 nc|ENSG00000186635|Q96P48-3|ARAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2438049316406 2 459.2218 916.429047 0.56714 0.00026044 -0.14992 -6.8845E-05 0.41723 0.0001916 459.2216376321678 47.982 0.66705 47.982 47.612 48.279 0 54 18 4 0 0 0 8448 1 9071 9071 10.074 8.3317 1 15358000 11804 7070 7429 7432 12089 12089 -0.03251067407609298 EEYHLGIG 8 Unmodified _EEYHLGIG_ 0 0 0 nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1 nc|ENSG00000186635|Q96P48-3|ARAP1 nc|ENSG00000186635|Q96P48-3|ARAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2444152832031 2 459.2218 916.429047 -0.0094097 -4.3212E-06 0.17796 8.1725E-05 0.16855 7.7404E-05 459.22183041284734 50.935 0.73218 47.89 47.494 48.226 -3.0453 57 20 4 0 0 0 0.53444 2 9381 9334;9381 26.341 11.76 1 15863000 11805 7070 7429 7432 12090;12091 12091 -0.03251067407609298 EEYHLGIG 8 Unmodified _EEYHLGIG_ 0 0 0 nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1 nc|ENSG00000186635|Q96P48-3|ARAP1 nc|ENSG00000186635|Q96P48-3|ARAP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.2218 916.429047 -0.23841 -0.00010948 0.33782 0.00015513 0.099412 4.5652E-05 459.22190772596366 50.802 0.63933 47.919 47.571 48.21 -2.8824 0.0096366 0.00020339 NaN 26.341 51 17 4 NaN NaN NaN NaN 0 NaN NaN 0 17482000 11806 7070 7429 7432 -0.03251067407609298 EEYIVKKL 8 Unmodified _EEYIVKKL_ 0 0 0 nc|ENSG00000110660|Q8IXU6-3|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;SLC35F2|p.P336Lfs*25|1|0.48|ENSG00000110660|chr11:107792733-107792733|G/-|frameshift_variant;ENSG00000110660|ENST00000525815|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.21221923828125 3 341.202459 1020.58555 -0.26359 -8.9936E-05 -0.14268 -4.8682E-05 -0.40626 -0.00013862 341.2023174013168 65.234 1.0072 62.187 61.869 62.876 -3.047 69 29 4 0 0 0 8448 2 12638 12638;12699 33.593 29.31 1 20579000 11807 2580 7430 7433 12092;12093 12092 0.07607797762852897 EEYIVKKL 8 Unmodified _EEYIVKKL_ 0 0 0 nc|ENSG00000110660|Q8IXU6-3|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;SLC35F2|p.P336Lfs*25|1|0.48|ENSG00000110660|chr11:107792733-107792733|G/-|frameshift_variant;ENSG00000110660|ENST00000525815|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 510.7361755371094 2 511.30005 1020.58555 -0.21622 -0.00011055 0.34623 0.00017703 0.13001 6.6475E-05 511.3001939163265 65.644 0.59984 62.186 61.926 62.526 -3.4581 38 16 3 0 0 0 0.8748 1 12347 12347 14.838 8.6325 1 7749700 11808 2580 7430 7433 12094 12094 0.07607797762852897 EEYIVKKL 8 Unmodified _EEYIVKKL_ 0 0 0 nc|ENSG00000110660|Q8IXU6-3|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;SLC35F2|p.P336Lfs*25|1|0.48|ENSG00000110660|chr11:107792733-107792733|G/-|frameshift_variant;ENSG00000110660|ENST00000525815|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.2119140625 3 341.202459 1020.58555 -0.38069 -0.00012989 0.15954 5.4436E-05 -0.22115 -7.5456E-05 341.2024198359499 65.396 0.85851 62.113 61.826 62.684 -3.2832 70 24 4 0 0 0 8448 1 12285 12285 28.46 18.386 1 12821000 11809 2580 7430 7433 12095 12095 0.07607797762852897 EEYIVKKL 8 Unmodified _EEYIVKKL_ 0 0 0 nc|ENSG00000110660|Q8IXU6-3|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;SLC35F2|p.P336Lfs*25|1|0.48|ENSG00000110660|chr11:107792733-107792733|G/-|frameshift_variant;ENSG00000110660|ENST00000525815|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 511.30005 1020.58555 -0.11119 -5.685E-05 0.22926 0.00011722 0.11807 6.0369E-05 511.30010690183985 62.413 0.5879 62.413 62.106 62.694 0 0.18887 6.66E-06 NaN 14.838 48 16 4 NaN NaN NaN NaN 0 NaN NaN 0 13258000 11810 2580 7430 7433 0.07607797762852897 EEYIVKKL 8 Unmodified _EEYIVKKL_ 0 0 0 nc|ENSG00000110660|Q8IXU6-3|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;SLC35F2|p.P336Lfs*25|1|0.48|ENSG00000110660|chr11:107792733-107792733|G/-|frameshift_variant;ENSG00000110660|ENST00000525815|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 511.30005 1020.58555 -0.1096 -5.6041E-05 0.35862 0.00018336 0.24901 0.00012732 511.30014595161765 65.234 0.60753 62.186 61.903 62.511 -3.047 -0.037345 0.00013895 NaN 14.838 45 17 3 NaN NaN NaN NaN 0 NaN NaN 0 9472600 11811 2580 7430 7433 0.07607797762852897 EEYIVKKL 8 Unmodified _EEYIVKKL_ 0 0 0 nc|ENSG00000110660|Q8IXU6-3|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;SLC35F2|p.P336Lfs*25|1|0.48|ENSG00000110660|chr11:107792733-107792733|G/-|frameshift_variant;ENSG00000110660|ENST00000525815|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 511.30005 1020.58555 0.26124 0.00013357 -0.084182 -4.3042E-05 0.17706 9.0532E-05 511.2999609818431 65.394 0.65031 62.11 61.826 62.476 -3.2832 -0.11345 -0.00031386 NaN 14.838 47 18 3 NaN NaN NaN NaN 0 NaN NaN 0 7946300 11812 2580 7430 7433 0.07607797762852897 EEYIYQFFED 10 Unmodified _EEYIYQFFED_ 0 0 0 NLRP14|p.Y443Tfs*10|1|0.25|ENSG00000158077|chr11:7043350-7043350|T/-|frameshift_variant;ENSG00000158077|ENST00000299481|NLRP14 NLRP14|p.Y443Tfs*10|1|0.25|ENSG00000158077|chr11:7043350-7043350|T/-|frameshift_variant NLRP14|p.Y443Tfs*10|1|0.25|ENSG00000158077|chr11:7043350-7043350|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.53082275390625 3 461.531081 1381.57141 NaN NaN NaN NaN NaN NaN NaN 174.38 1 169.49 168.99 169.99 -4.8916 0 0 0 2.8426 1 34714 34714 0 0 1 11813 5152 7431 7434 12096 12096 -0.1041094424676885 EEYKIQSF 8 Unmodified _EEYKIQSF_ 0 0 0 ENST00000577240.1_1_17:73264046-73266276:-|nuORF;ENSG00000125457|ENST00000325102|MIF4GD;nc|ENSG00000125457|A9UHW6-2|MIF4GD;nc|ENSG00000125457|A9UHW6-3|MIF4GD ENST00000577240.1_1_17:73264046-73266276:-|nuORF ENST00000577240.1_1_17:73264046-73266276:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2571411132812 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 88.712 1 84.919 84.419 85.419 -3.7926 0 0 0 0.17841 1 17358 17358 32.305 5.9642 1 11814 3360 7432 7435 12097 12097 -0.022422425476406715 EEYKNAKPNS 10 Unmodified _EEYKNAKPNS_ 0 0 0 nc|ENSG00000111785|Q9NVN3-4|RIC8B nc|ENSG00000111785|Q9NVN3-4|RIC8B nc|ENSG00000111785|Q9NVN3-4|RIC8B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2501831054688 2 590.28566 1178.55677 0.45498 0.00026857 -0.35069 -0.00020701 0.10429 6.1563E-05 590.2853913140735 82.474 0.42123 78.867 78.672 79.093 -3.6079 19 11 2 0 0 0 0.65108 1 16081 16081 16.149 2.2431 1 1462400 11815 12284 7433 7436 12098 12098 -0.025369716042405344 EEYKRQLL 8 Unmodified _EEYKRQLL_ 0 0 0 ENST00000476609.1_1_2:102441885-102476398:+|nuORF;MAP4K4|p.N722Mfs*3|1|0.46|ENSG00000071054|chr2:101867251-101867251|A/-|frameshift_variant;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;ENSG00000071054|ENST00000324219|MAP4K4 ENST00000476609.1_1_2:102441885-102476398:+|nuORF ENST00000476609.1_1_2:102441885-102476398:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 124.4 1 119.81 119.31 120.31 -4.5926 0 0 0 0.21486 1 23936 23936 7.2892 0 1 11816 1445 7434 7437 12099 12099 0.0461712798901317 EEYKVKLA 8 Unmodified _EEYKVKLA_ 0 0 0 REV__ENSG00000140743|ENST00000268383|CDR2 REV__ENSG00000140743|ENST00000268383|CDR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.276123046875 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 73.889 1 70.212 69.712 70.712 -3.6764 0 0 0 0.21452 1 13971 13971 13.508 0 1 + 11817 16595 7435 7438 12100 12100 0.048469382116991255 EEYKVKLA 8 Unmodified _EEYKVKLA_ 0 0 0 REV__ENSG00000140743|ENST00000268383|CDR2 REV__ENSG00000140743|ENST00000268383|CDR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2763366699219 2 490.276575 978.538597 0.13382 6.5608E-05 -0.64304 -0.00031527 -0.50922 -0.00024966 490.27640078219804 73.714 0.31378 70.12 69.978 70.292 -3.594 10 8 2 0 0 0 0.70613 1 13991 13991 13.508 0 1 397840 + 11818 16595 7435 7438 12101 12101 0.048469382116991255 EEYLQGEFY 9 Unmodified _EEYLQGEFY_ 0 0 0 tr|U7SJ95|U7SJ95_FUSNUDUF3800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02154PE=4SV=1 tr|U7SJ95|U7SJ95_FUSNUDUF3800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02154PE=4SV=1 tr|U7SJ95|U7SJ95_FUSNUDUF3800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02154PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.27001953125 2 589.256037 1176.49752 0.65771 0.00038756 1.2505 0.00073689 1.9083 0.0011245 589.2569442645856 81.407 0.66354 81.407 81.019 81.683 0 38 18 3 0 0 0 0.28246 1 15880 15880 1.2148 0.14968 1 3822600 11819 25937 7436 7439 12102 12102 -0.08366867618406104 EEYLQGEFY 9 Unmodified _EEYLQGEFY_ 0 0 0 tr|U7SJ95|U7SJ95_FUSNUDUF3800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02154PE=4SV=1 tr|U7SJ95|U7SJ95_FUSNUDUF3800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02154PE=4SV=1 tr|U7SJ95|U7SJ95_FUSNUDUF3800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02154PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.25732421875 2 589.256037 1176.49752 0.61981 0.00036522 -0.28849 -0.00017 0.33131 0.00019523 589.2574706715853 85.466 0.62899 81.557 81.217 81.846 -3.9093 43 17 3 0 0 0 0.39168 2 16300 16286;16300 21.747 2.4897 1 3413000 11820 25937 7436 7439 12103;12104 12104 -0.08366867618406104 EEYLQGEFY 9 Unmodified _EEYLQGEFY_ 0 0 0 tr|U7SJ95|U7SJ95_FUSNUDUF3800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02154PE=4SV=1 tr|U7SJ95|U7SJ95_FUSNUDUF3800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02154PE=4SV=1 tr|U7SJ95|U7SJ95_FUSNUDUF3800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02154PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2755126953125 2 589.256037 1176.49752 0.030575 1.8017E-05 1.6383 0.00096539 1.6689 0.00098341 589.2578598024223 85.241 0.82196 81.53 81.015 81.837 -3.7117 48 23 3 0 0 0 0.46541 1 16310 16310 21.747 1.3321 1 3102100 11821 25937 7436 7439 12105 12105 -0.08366867618406104 EEYLSRQVK 9 Unmodified _EEYLSRQVK_ 0 0 0 REV__nc|ENSG00000266733|Q9UFV1|TBC1D29P REV__nc|ENSG00000266733|Q9UFV1|TBC1D29P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.328857421875 2 576.306395 1150.59824 NaN NaN NaN NaN NaN NaN NaN 86.745 1 86.745 86.245 87.245 0 0 0 0 0.23508 1 16928 16928 11.64 0.81637 1 + 11822 24303 7437 7440 12106 12106 0.02896209155096585 EEYLSRQVK 9 Unmodified _EEYLSRQVK_ 0 0 0 REV__nc|ENSG00000266733|Q9UFV1|TBC1D29P REV__nc|ENSG00000266733|Q9UFV1|TBC1D29P MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3284301757812 2 576.306395 1150.59824 NaN NaN NaN NaN NaN NaN NaN 90.592 1 86.733 86.233 87.233 -3.8595 0 0 0 0.22251 1 17724 17724 16.942 1.0951 1 + 11823 24303 7437 7440 12107 12107 0.02896209155096585 EEYLSRQVK 9 Unmodified _EEYLSRQVK_ 0 0 0 REV__nc|ENSG00000266733|Q9UFV1|TBC1D29P REV__nc|ENSG00000266733|Q9UFV1|TBC1D29P MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3391723632812 2 576.306395 1150.59824 NaN NaN NaN NaN NaN NaN NaN 90.762 1 86.718 86.218 87.218 -4.0443 0 0 0 0.22251 1 17289 17289 16.942 3.8998 1 + 11824 24303 7437 7440 12108 12108 0.02896209155096585 EEYNRIKITDL 11 Unmodified _EEYNRIKITDL_ 0 0 0 ENST00000491210.1_1_1:158811943-158812264:+|nuORF;ENSG00000163563|ENST00000368141|MNDA ENST00000491210.1_1_1:158811943-158812264:+|nuORF ENST00000491210.1_1_1:158811943-158812264:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2486572265625 3 465.248908 1392.72489 -0.0078886 -3.6702E-06 -0.29247 -0.00013607 -0.30036 -0.00013974 465.24871159652224 106.37 0.62028 102 101.65 102.27 -4.3764 29 17 2 0 0 0 0.57462 1 20352 20352 0.026206 0 1 2528900 11825 5441 7438 7441 12109 12109 0.044240905895549076 EEYNRIKITDL 11 Unmodified _EEYNRIKITDL_ 0 0 0 ENST00000491210.1_1_1:158811943-158812264:+|nuORF;ENSG00000163563|ENST00000368141|MNDA ENST00000491210.1_1_1:158811943-158812264:+|nuORF ENST00000491210.1_1_1:158811943-158812264:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.248779296875 3 465.248908 1392.72489 0.73277 0.00034092 -0.62856 -0.00029244 0.10421 4.8483E-05 465.5829247751532 106 0.72044 101.91 101.64 102.36 -4.0913 28 20 2 0 0 0 0.57462 1 20365 20365 0.026206 0 1 1885600 11826 5441 7438 7441 12110 12110 0.044240905895549076 EEYQAIQKA 9 Unmodified _EEYQAIQKA_ 0 0 0 nc|ENSG00000002016|P43351-4|RAD52;nc|ENSG00000002016|P43351-3|RAD52;nc|ENSG00000002016|P43351-2|RAD52;ENSG00000002016|ENST00000358495|RAD52 nc|ENSG00000002016|P43351-4|RAD52 nc|ENSG00000002016|P43351-4|RAD52 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2747802734375 2 540.272021 1078.52949 0.28326 0.00015304 -0.045204 -2.4422E-05 0.23805 0.00012861 540.2719546727725 33.566 0.70418 33.566 33.234 33.938 0 51 19 4 0 0 0 0.24263 2 6103 6103;6164 46.021 25.567 1 8299800 11827 961 7439 7442 12111;12112 12111 -0.006634551446268233 EEYQAIQKA 9 Unmodified _EEYQAIQKA_ 0 0 0 nc|ENSG00000002016|P43351-4|RAD52;nc|ENSG00000002016|P43351-3|RAD52;nc|ENSG00000002016|P43351-2|RAD52;ENSG00000002016|ENST00000358495|RAD52 nc|ENSG00000002016|P43351-4|RAD52 nc|ENSG00000002016|P43351-4|RAD52 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.275634765625 2 540.272021 1078.52949 -0.21121 -0.00011411 0.34012 0.00018376 0.12891 6.9646E-05 540.272137828355 36.053 0.59796 33.659 33.346 33.943 -2.3938 42 16 4 0 0 0 0.24263 2 6687 6639;6687 46.021 18.392 1 6073300 11828 961 7439 7442 12113;12114 12114 -0.006634551446268233 EEYQAIQKA 9 Unmodified _EEYQAIQKA_ 0 0 0 nc|ENSG00000002016|P43351-4|RAD52;nc|ENSG00000002016|P43351-3|RAD52;nc|ENSG00000002016|P43351-2|RAD52;ENSG00000002016|ENST00000358495|RAD52 nc|ENSG00000002016|P43351-4|RAD52 nc|ENSG00000002016|P43351-4|RAD52 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2755737304688 2 540.272021 1078.52949 0.23798 0.00012858 -0.042862 -2.3157E-05 0.19512 0.00010542 540.2719397391652 35.993 0.59839 33.74 33.466 34.065 -2.2527 47 16 4 0 0 0 0.35429 1 6390 6390 37.974 10.345 1 6805500 11829 961 7439 7442 12115 12115 -0.006634551446268233 EEYQAIQKA 9 Unmodified _EEYQAIQKA_ 0 0 0 nc|ENSG00000002016|P43351-4|RAD52;nc|ENSG00000002016|P43351-3|RAD52;nc|ENSG00000002016|P43351-2|RAD52;ENSG00000002016|ENST00000358495|RAD52 nc|ENSG00000002016|P43351-4|RAD52 nc|ENSG00000002016|P43351-4|RAD52 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2749633789062 2 540.272021 1078.52949 0.37331 0.00020169 -0.17712 -9.5691E-05 0.1962 0.000106 540.2718469269363 36.03 0.66578 33.753 33.386 34.052 -2.2766 46 18 4 0 0 0 0.24263 1 6361 6361 46.021 18.392 1 5741800 11830 961 7439 7442 12116 12116 -0.006634551446268233 EEYQAQRY 8 Unmodified _EEYQAQRY_ 0 0 0 nc|ENSG00000188611|Q9NR71-2|ASAH2;ENSG00000188611|ENST00000682911|ASAH2 nc|ENSG00000188611|Q9NR71-2|ASAH2 nc|ENSG00000188611|Q9NR71-2|ASAH2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.769775390625 2 543.74617 1085.47779 NaN NaN NaN NaN NaN NaN NaN 33.589 1 33.589 33.089 34.089 0 0 0 0 0.21323 1 6134 6134 14.582 4.3983 1 11831 7180 7440 7443 12117 12117 -0.061531988385240766 EEYQRIYTT 9 Unmodified _EEYQRIYTT_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2891235351562 2 601.788035 1201.56152 0.50574 0.00030435 -0.26065 -0.00015685 0.24509 0.00014749 601.7878061884134 51.524 0.66078 51.524 51.2 51.861 0 38 18 3 0 0 0 8.7315E-17 2 9772 9772;9824 168.54 110.82 1 17387000 11832 3339 7441 7444 12118;12119 12118 -0.031200874614796703 EEYQRIYTT 9 Unmodified _EEYQRIYTT_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.289794921875 2 601.788035 1201.56152 0.79421 0.00047795 -0.53508 -0.000322 0.25913 0.00015594 601.7874835353316 54.739 0.47439 51.855 51.601 52.075 -2.8837 34 13 3 0 0 0 8.7315E-17 2 10472 10422;10472 168.54 110.82 1 13813000 11833 3339 7441 7444 12120;12121 12121 -0.031200874614796703 EEYQRIYTT 9 Unmodified _EEYQRIYTT_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2894287109375 2 601.788035 1201.56152 0.41203 0.00024795 -0.3197 -0.00019239 0.092327 5.5561E-05 601.7878090722728 55.052 0.49398 51.917 51.604 52.098 -3.1352 31 13 3 0 0 0 8.7315E-17 1 10169 10169 168.54 110.82 1 8338700 11834 3339 7441 7444 12122 12122 -0.031200874614796703 EEYQRIYTT 9 Unmodified _EEYQRIYTT_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2898559570312 2 601.788035 1201.56152 0.050282 3.0259E-05 0.13388 8.057E-05 0.18417 0.00011083 601.7880110261905 54.983 0.66327 51.845 51.553 52.216 -3.1377 38 18 3 0 0 0 8.7315E-17 3 10206 10206;10256;10258 168.54 110.82 1 8512600 11835 3339 7441 7444 12123;12124;12125 12123 -0.031200874614796703 EEYQSLIRY 9 Unmodified _EEYQSLIRY_ 0 0 0 ENST00000463735.1_1_1:161123865-161127131:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1 ENST00000463735.1_1_1:161123865-161127131:+|nuORF ENST00000463735.1_1_1:161123865-161127131:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2994995117188 2 600.798403 1199.58225 0.51822 0.00031135 -0.24421 -0.00014672 0.27401 0.00016462 600.7982888182596 108.54 0.74177 108.54 108.18 108.92 0 57 20 4 0 0 0 0.12505 1 21348 21348 47.749 22.349 1 13884000 11836 4464 7442 7445 12126 12126 -0.00955497081804424 EEYQSLIRY 9 Unmodified _EEYQSLIRY_ 0 0 0 ENST00000463735.1_1_1:161123865-161127131:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1 ENST00000463735.1_1_1:161123865-161127131:+|nuORF ENST00000463735.1_1_1:161123865-161127131:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2864990234375 2 600.798403 1199.58225 0.80731 0.00048503 -0.42219 -0.00025365 0.38512 0.00023138 600.7980734559624 113.1 0.75844 108.65 108.29 109.04 -4.4539 65 20 4 0 0 0 0.12505 1 22275 22275 47.749 22.349 1 15735000 11837 4464 7442 7445 12127 12127 -0.00955497081804424 EEYQSLIRY 9 Unmodified _EEYQSLIRY_ 0 0 0 ENST00000463735.1_1_1:161123865-161127131:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1 ENST00000463735.1_1_1:161123865-161127131:+|nuORF ENST00000463735.1_1_1:161123865-161127131:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3019409179688 2 600.798403 1199.58225 0.64679 0.00038859 -0.19796 -0.00011893 0.44884 0.00026966 600.7982144879778 112.88 0.84108 108.6 108.18 109.02 -4.2725 76 23 4 0 0 0 0.09885 2 21729 21695;21729 56.177 23.872 1 15540000 11838 4464 7442 7445 12128;12129 12129 -0.00955497081804424 EEYQSLIRY 9 Unmodified _EEYQSLIRY_ 0 0 0 ENST00000463735.1_1_1:161123865-161127131:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1 ENST00000463735.1_1_1:161123865-161127131:+|nuORF ENST00000463735.1_1_1:161123865-161127131:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 600.798403 1199.58225 0.40056 0.00024066 0.17028 0.0001023 0.57084 0.00034296 600.7984111396606 113.23 0.77608 108.7 108.25 109.03 -4.5259 0.07771 0.00039952 NaN 56.177 70 21 5 NaN NaN NaN NaN 0 NaN NaN 0 14861000 11839 4464 7442 7445 -0.00955497081804424 EEYRCECL 8 Unmodified _EEYRCECL_ 0 0 0 REV__ENST00000495205.1_1_1:201114427-201123087:-|nuORF REV__ENST00000495205.1_1_1:201114427-201123087:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2689208984375 2 522.709885 1043.40522 0.19305 0.00010091 -4.2828 -0.0022386 -4.0897 -0.0021377 523.2077788195335 129.16 0.48956 129.16 128.84 129.33 0 21 13 2 0 0 0 0.83439 1 25537 25537 20.871 2.7362 1 1651400 + 11840 15503 7443 7446 12130 12130 -0.11474992227954317 EEYRLAAA 8 Unmodified _EEYRLAAA_ 0 0 0 ENST00000344691.8_1_21:36260428-36260479:-|nuORF ENST00000344691.8_1_21:36260428-36260479:-|nuORF ENST00000344691.8_1_21:36260428-36260479:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.54217529296875 2 461.735074 921.455596 NaN NaN NaN NaN NaN NaN NaN 52.483 1 49.387 48.887 49.887 -3.0954 0 0 0 0.10566 1 9687 9687 43.858 9.4566 1 11841 8893 7444 7447 12131 12131 -0.008273785163055436 EEYSQILY 8 Unmodified _EEYSQILY_ 0 0 0 ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20 ENST00000474988.5_1_6:36410818-36454949:+|nuORF ENST00000474988.5_1_6:36410818-36454949:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.68212890625 2 522.747847 1043.48114 0.19253 0.00010064 0.23608 0.00012341 0.42861 0.00022406 522.7478984198493 128.72 0.91772 128.72 128.24 129.16 0 57 25 3 0 0 0 0.69085 1 25461 25461 15.768 0 1 8282600 11842 2667 7445 7448 12132 12132 -0.03885948784500215 EEYSQILY 8 Unmodified _EEYSQILY_ 0 0 0 ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20 ENST00000474988.5_1_6:36410818-36454949:+|nuORF ENST00000474988.5_1_6:36410818-36454949:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7012329101562 2 522.747847 1043.48114 0.25702 0.00013436 0.1278 6.6807E-05 0.38482 0.00020116 522.7478234759236 133.93 0.92079 129.11 128.56 129.48 -4.8175 60 25 3 0 0 0 0.69085 1 25840 25840 15.768 0 1 9612500 11843 2667 7445 7448 12133 12133 -0.03885948784500215 EEYTFHLQL 9 Unmodified _EEYTFHLQL_ 0 0 0 REV__nc|ENSG00000141627|Q7RTS9|DYM REV__nc|ENSG00000141627|Q7RTS9|DYM MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2687377929688 2 590.287671 1178.56079 NaN NaN NaN NaN NaN NaN NaN 82.787 1 79.088 78.588 79.588 -3.6985 0 0 0 0.091359 1 15791 15791 39.957 1.9833 1 + 11844 16646 7446 7449 12134 12134 -0.02134882110522085 EEYTMEEC 8 Unmodified _EEYTMEEC_ 0 0 0 REV__nc|ENSG00000158571|P16118-2|PFKFB1 REV__nc|ENSG00000158571|P16118-2|PFKFB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 517.5018920898438 2 517.178083 1032.34161 0.20795 0.00010754 -1.1304 -0.00058462 -0.92246 -0.00047708 517.1784050532574 140.32 0.66222 140.32 140.02 140.68 0 39 17 3 0 0 0 0.76728 1 27911 27911 5.7604 0 1 6622300 + 11845 24113 7447 7450 12135 12135 -0.1732639745571305 EEYTMEEC 8 Unmodified _EEYTMEEC_ 0 0 0 REV__nc|ENSG00000158571|P16118-2|PFKFB1 REV__nc|ENSG00000158571|P16118-2|PFKFB1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 517.178083 1032.34161 0.20795 0.00010754 -1.1304 -0.00058462 -0.92246 -0.00047708 517.1784050532574 140.32 0.66222 140.32 140.02 140.68 0 -0.18427 0.0011803 NaN 5.7604 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 6622300 + 11846 24113 7447 7450 -0.1732639745571305 EEYTMEEC 8 Unmodified _EEYTMEEC_ 0 0 0 REV__nc|ENSG00000158571|P16118-2|PFKFB1 REV__nc|ENSG00000158571|P16118-2|PFKFB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 517.178083 1032.34161 -0.11815 -6.1105E-05 -3.361 -0.0017382 -3.4791 -0.0017993 517.1787187934638 145.32 0.90625 140.65 140.3 141.21 -4.6694 0.14271 -0.0011269 NaN 5.7604 85 25 5 NaN NaN NaN NaN 0 NaN NaN 0 5859900 + 11847 24113 7447 7450 -0.1732639745571305 EEYTMEEC 8 Unmodified _EEYTMEEC_ 0 0 0 REV__nc|ENSG00000158571|P16118-2|PFKFB1 REV__nc|ENSG00000158571|P16118-2|PFKFB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 517.178083 1032.34161 -0.51023 -0.00026388 -1.4551 -0.00075256 -1.9654 -0.0010164 517.1790609392783 145.66 1.0028 140.55 140.21 141.21 -5.1108 0.044039 0.00084447 NaN 5.7604 88 27 4 NaN NaN NaN NaN 0 NaN NaN 0 10978000 + 11848 24113 7447 7450 -0.1732639745571305 EEYTMEEC 8 Unmodified _EEYTMEEC_ 0 0 0 REV__nc|ENSG00000158571|P16118-2|PFKFB1 REV__nc|ENSG00000158571|P16118-2|PFKFB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 517.178083 1032.34161 0.32682 0.00016902 -3.8705 -0.0020017 -3.5437 -0.0018327 517.1784564970771 145.45 1.009 140.51 140.14 141.14 -4.9445 -0.0024801 -0.0016539 NaN 5.7604 98 28 5 NaN NaN NaN NaN 0 NaN NaN 0 10103000 + 11849 24113 7447 7450 -0.1732639745571305 EEYVHKRY 8 Unmodified _EEYVHKRY_ 0 0 0 ENSG00000185274|ENST00000333538|GALNT17 ENSG00000185274|ENST00000333538|GALNT17 ENSG00000185274|ENST00000333538|GALNT17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2069091796875 3 375.189212 1122.54581 -0.18624 -6.9875E-05 0.031179 1.1698E-05 -0.15506 -5.8177E-05 375.1891693158042 31.329 3.5962 29.181 26.891 30.487 -2.1483 228 102 4 0 0 0 0.752 1 4945 4945 6.7232 2.1943 1 5145400 11850 6977 7448 7451 12136 12136 -0.010563291878725067 EEYWRAYY 8 Unmodified _EEYWRAYY_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.256591796875 2 590.258914 1178.50327 NaN NaN NaN NaN NaN NaN NaN 51.826 1 51.826 51.326 52.326 0 0 0 0 0.20568 1 9842 9842 20.871 1.6142 1 11851 1342 7449 7452 12137 12137 -0.07883724316116059 EEYWRAYY 8 Unmodified _EEYWRAYY_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2605590820312 2 590.258914 1178.50327 NaN NaN NaN NaN NaN NaN NaN 17.729 1 16.456 15.956 16.956 -1.2722 0 0 0 0.21486 1 2627 2627 9.3474 0.37119 1 11852 1342 7449 7452 12138 12138 -0.07883724316116059 EEYWRAYY 8 Unmodified _EEYWRAYY_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2769165039062 2 590.258914 1178.50327 NaN NaN NaN NaN NaN NaN NaN 106.52 1 102.43 101.93 102.93 -4.0913 0 0 0 0.21486 1 20483 20483 8.5933 0.43775 1 11853 1342 7449 7452 12139 12139 -0.07883724316116059 EEYYKLLE 8 Unmodified _EEYYKLLE_ 0 0 0 REV__tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1 REV__tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7724609375 2 543.771322 1085.52809 NaN NaN NaN NaN NaN NaN NaN 40.726 1 38.186 37.686 38.686 -2.5398 0 0 0 0.21323 1 7303 7303 14.582 0 1 + 11854 25351 7450 7453 12140 12140 -0.011250892333691809 EFAMFQIA 8 Unmodified _EFAMFQIA_ 0 0 0 REV__ENST00000265870.7_1_10:70248298-70276562:-|nuORF REV__ENST00000265870.7_1_10:70248298-70276562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7313232421875 2 478.730946 955.447339 NaN NaN NaN NaN NaN NaN NaN 74.954 1 71.232 70.732 71.732 -3.7227 0 0 0 0.2343 1 14173 14173 0.30703 0.24304 1 + 11855 15708 7451 7454 12141 12141 -0.03216648757256735 EFARELEHLQY 11 Unmodified _EFARELEHLQY_ 0 0 0 REV__ENSG00000134438|ENST00000334889|RAX REV__ENSG00000134438|ENST00000334889|RAX MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7297668457031 3 478.905253 1433.69393 0.12001 5.7474E-05 -0.3484 -0.00016685 -0.22839 -0.00010938 478.9053575215651 75.659 0.69707 71.936 71.545 72.242 -3.7227 43 19 3 0 0 0 0.95898 1 14272 14272 7.0371 0 1 3516200 + 11856 16208 7452 7455 12142 12142 -0.005570627246470394 EFCKENGGY 9 Unmodified _EFCKENGGY_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113242781-113243126:+|nuORF;ENST00000494319.1_1_1:113242363-113243003:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69287109375 2 523.716024 1045.4175 NaN NaN NaN NaN NaN NaN NaN 33.571 1 33.571 33.071 34.071 0 0 0 0 0.19512 1 6131 6131 12.241 2.1667 1 11857 5044 7453 7456 12143 12143 -0.10339632493264617 EFDRKYKKNLK 11 Unmodified _EFDRKYKKNLK_ 0 0 0 ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-2|ARHGAP8;nc|ENSG00000241484|P85298-5|ARHGAP8;ENST00000460809.5_1_22:45182338-45244945:+|nuORF ENSG00000241484|ENST00000356099|ARHGAP8 ENSG00000241484|ENST00000356099|ARHGAP8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26165771484375 3 490.280542 1467.8198 NaN NaN NaN NaN NaN NaN NaN 68.354 1 64.818 64.318 65.318 -3.5362 0 0 0 0.22632 1 12844 12844 0.094841 0 1 11858 7852 7454 7457 12144 12144 0.10460068851421056 EFDSGLLHWRI 11 Unmodified _EFDSGLLHWRI_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23724365234375 3 458.238455 1371.69353 NaN NaN NaN NaN NaN NaN NaN 130.39 1 125.75 125.25 126.25 -4.6359 0 0 0 0.22632 1 25696 25696 0.11104 0 1 11859 217 7455 7458 12145 12145 0.022555623461357754 EFEIDRFTF 9 Unmodified _EFEIDRFTF_ 0 0 0 REV__ENSG00000182156|ENST00000328313|ENPP7 REV__ENSG00000182156|ENST00000328313|ENPP7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2728271484375 2 602.287671 1202.56079 NaN NaN NaN NaN NaN NaN NaN 138.47 1 133.63 133.13 134.13 -4.84 0 0 0 0.23508 1 26686 26686 7.9102 0.62092 1 + 11860 18761 7456 7459 12146 12146 -0.03238882110531449 EFELEESY 8 Unmodified _EFELEESY_ 0 0 0 nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15 nc|ENSG00000119321|Q5T1M5-2|FKBP15 nc|ENSG00000119321|Q5T1M5-2|FKBP15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6854248046875 2 523.221662 1044.42877 -0.42124 -0.0002204 -0.94152 -0.00049262 -1.3628 -0.00071302 523.2211534507604 53.914 0.97647 51.03 50.52 51.497 -2.8837 73 27 5 0 0 0 0.89276 1 10191 10191 0.68139 0 1 130580000 11861 3069 7457 7460 12147 12147 -0.09166531918117471 EFELRREIKRL 11 Unmodified _EFELRREIKRL_ 0 0 0 TADA2A|p.C298Vfs*50|1|0.35|ENSG00000276234|chr17:37467518-37467518|T/-|frameshift_variant;nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A TADA2A|p.C298Vfs*50|1|0.35|ENSG00000276234|chr17:37467518-37467518|T/-|frameshift_variant TADA2A|p.C298Vfs*50|1|0.35|ENSG00000276234|chr17:37467518-37467518|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 372.8682861328125 4 372.971588 1487.85725 0.021624 8.0651E-06 -0.37868 -0.00014124 -0.35706 -0.00013317 372.9714591190117 48.737 0.80148 45.738 45.3 46.102 -2.999 57 22 3 0 0 0 0.96227 1 8836 8836 0 0 1 4498700 11862 8031 7458 7461 12148 12148 0.13283160117020998 EFESDMEYQ 9 Unmodified _EFESDMEYQ_ 0 0 0 REV__ENSG00000166825|ENST00000300060|ANPEP REV__ENSG00000166825|ENST00000300060|ANPEP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 393.30206298828125 3 393.149983 1176.42812 0.52295 0.0002056 -0.11859 -4.6623E-05 0.40436 0.00015898 393.14991039217966 122.28 0.62128 117.59 117.13 117.75 -4.6873 23 17 2 0 0 0 0.88413 1 23465 23465 0 0 1 1667400 + 11863 17877 7459 7462 12149 12149 -0.1530369462948329 EFFLKQWVKPF 11 Unmodified _EFFLKQWVKPF_ 0 0 0 REV__ENST00000445427.1_1_10:6626067-6626238:+|nuORF REV__ENST00000445427.1_1_10:6626067-6626238:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2711486816406 3 490.271096 1467.79146 NaN NaN NaN NaN NaN NaN NaN 80.503 1 76.993 76.493 77.493 -3.5102 0 0 0 0.22632 1 15722 15722 0.172 0 1 + 11864 21749 7460 7463 12150 12150 0.0762737094212298 EFFNDLYF 8 Unmodified _EFFNDLYF_ 0 0 0 KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant;KLHDC4|p.R412Gfs*28|1|0.34|ENSG00000104731|chr16:87709478-87709478|G/-|frameshift_variant;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4 KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7760009765625 2 547.745108 1093.47566 NaN NaN NaN NaN NaN NaN NaN 130.12 1 125.29 124.79 125.79 -4.8355 0 0 0 0.23538 1 24982 24982 1.7423 1.6784 1 11865 2250 7461 7464 12151 12151 -0.0673362757634095 EFFSRHPQR 9 Unmodified _EFFSRHPQR_ 0 0 0 REV__TMEM37|p.R18H|1|0.39|ENSG00000171227|chr2:119436920-119436920|G/A|missense_variant REV__TMEM37|p.R18H|1|0.39|ENSG00000171227|chr2:119436920-119436920|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2999877929688 2 602.304521 1202.59449 NaN NaN NaN NaN NaN NaN NaN 109.31 1 104.86 104.36 105.36 -4.4518 0 0 0 0.23508 1 20980 20980 10.824 1.4408 1 + 11866 24821 7462 7465 12152 12152 0.001295841718729207 EFGKSYSLR 9 Unmodified _EFGKSYSLR_ 0 0 0 tr|U7T2M4|U7T2M4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00626PE=3SV=1 tr|U7T2M4|U7T2M4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00626PE=3SV=1 tr|U7T2M4|U7T2M4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00626PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7898559570312 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 139.62 1 139.62 139.12 140.12 0 0 0 0 0.23508 1 27759 27759 8.1555 0.24537 1 11867 26372 7463 7466 12153 12153 0.011205549548776617 EFHVPPKPK 9 Unmodified _EFHVPPKPK_ 0 0 0 REV__ENSG00000160007|ENST00000672722|ARHGAP35 REV__ENSG00000160007|ENST00000672722|ARHGAP35 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20123291015625 3 360.206315 1077.59712 NaN NaN NaN NaN NaN NaN NaN 80.687 1 76.848 76.348 77.348 -3.8392 0 0 0 0.23508 1 15317 15317 7.609 2.2062 1 + 11868 17388 7464 7467 12154 12154 0.06142039576843672 EFHVPPKPK 9 Unmodified _EFHVPPKPK_ 0 0 0 REV__ENSG00000160007|ENST00000672722|ARHGAP35 REV__ENSG00000160007|ENST00000672722|ARHGAP35 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2161560058594 3 360.206315 1077.59712 NaN NaN NaN NaN NaN NaN NaN 80.632 1 76.944 76.444 77.444 -3.6879 0 0 0 0.23508 1 15374 15374 7.609 0.97858 1 + 11869 17388 7464 7467 12155 12155 0.06142039576843672 EFIENESDDY 10 Unmodified _EFIENESDDY_ 0 0 0 REV__tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1 REV__tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7547607421875 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 145.06 1 140.39 139.89 140.89 -4.6694 0 0 0 2.8426 1 28748 28748 0.69767 0 1 + 11870 25446 7465 7468 12156 12156 -0.13636984557206233 EFILVGFTNY 10 Unmodified _EFILVGFTNY_ 0 0 0 OR5K4|p.I15V|1|0.09|ENSG00000196098|chr3:98353896-98353896|A/G|missense_variant OR5K4|p.I15V|1|0.09|ENSG00000196098|chr3:98353896-98353896|A/G|missense_variant OR5K4|p.I15V|1|0.09|ENSG00000196098|chr3:98353896-98353896|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.279296875 2 601.808239 1201.60193 0.57866 0.00034824 2.0798 0.0012516 2.6585 0.0015999 601.809556090732 33.419 0.42104 31.272 30.972 31.393 -2.1468 16 11 2 0 0 0 0.71778 1 5773 5773 9.3831 0.63772 1 704240 11871 12733 7466 7469 12157 12157 0.009188789289737542 EFIPFDRFQDF 11 Unmodified _EFIPFDRFQDF_ 0 0 0 REV__ENST00000600330.1_1_19:50978580-50979281:-|nuORF REV__ENST00000600330.1_1_19:50978580-50979281:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 487.2582702636719 3 487.566348 1459.67722 NaN NaN NaN NaN NaN NaN NaN 155.43 1 150.15 149.65 150.65 -5.2854 0 0 0 0.22632 1 30149 30149 0.026206 0 1 + 11872 16675 7467 7470 12158 12158 -0.03423563610658675 EFKDQVRKQQY 11 Unmodified _EFKDQVRKQQY_ 0 0 0 REV__TMEM131-NDUFA10|1|fusion REV__TMEM131-NDUFA10|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26531982421875 3 490.256285 1467.74703 NaN NaN NaN NaN NaN NaN NaN 46.927 1 43.984 43.484 44.484 -2.9421 0 0 0 0.22632 1 8540 8540 0.58532 0 1 + 11873 24813 7468 7471 12159 12159 0.031863150579965804 EFKIPINPPP 10 Unmodified _EFKIPINPPP_ 0 0 0 REV__ENSG00000182447|ENST00000327928|OTOL1 REV__ENSG00000182447|ENST00000327928|OTOL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.330078125 2 576.326599 1150.63865 0.29245 0.00016855 2.5772 0.0014853 2.8697 0.0016539 576.8283287748566 124.7 0.14607 124.7 124.58 124.72 0 6 3 2 0 0 0 0.53051 1 24593 24593 0.26539 0 1 1753400 + 11874 18780 7469 7472 12160 12160 0.06935175545527272 EFKRQRYRWPV 11 Unmodified _EFKRQRYRWPV_ 0 0 0 REV__ENST00000563686.5_1_18:52942938-53070719:-|nuORF REV__ENST00000563686.5_1_18:52942938-53070719:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.261962890625 3 522.288031 1563.84226 NaN NaN NaN NaN NaN NaN NaN 153.24 1 153.24 152.74 153.74 0 0 0 0 0.22632 1 30700 30700 0.094841 0.094841 1 + 11875 23084 7470 7473 12161 12161 0.08289713039675917 EFLIKLGLVND 11 Unmodified _EFLIKLGLVND_ 0 0 0 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76611328125 2 630.863546 1259.71254 NaN NaN NaN NaN NaN NaN NaN 73.412 1 70.101 69.601 70.601 -3.3107 0 0 0 0.23018 1 14311 14311 8.1555 3.966 1 11876 4868 7471 7474 12162 12162 0.09307098917179246 EFLLDLIEDP 10 Unmodified _EFLLDLIEDP_ 0 0 0 ENSG00000118729|ENST00000261448|CASQ2 ENSG00000118729|ENST00000261448|CASQ2 ENSG00000118729|ENST00000261448|CASQ2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.280517578125 2 602.310812 1202.60707 1.3762 0.00082891 -0.8885 -0.00053515 0.48771 0.00029376 602.3110338320117 31.099 0.48922 28.982 28.719 29.208 -2.1167 19 13 2 0 0 0 0.91149 1 5583 5583 3.2813 1.9518 1 1386600 11877 3047 7472 7475 12163 12163 0.013871380009277345 EFLMYWEQMLD 11 Unmodified _EFLMYWEQMLD_ 0 0 0 ULBP1|p.P215Qfs*27|1|0.37|ENSG00000111981|chr6:149970031-149970031|C/-|frameshift_variant;ENSG00000111981|ENST00000229708|ULBP1 ULBP1|p.P215Qfs*27|1|0.37|ENSG00000111981|chr6:149970031-149970031|C/-|frameshift_variant ULBP1|p.P215Qfs*27|1|0.37|ENSG00000111981|chr6:149970031-149970031|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 752.8257446289062 2 752.827988 1503.64142 NaN NaN NaN NaN NaN NaN NaN 11.152 1 11.152 10.652 11.652 0 0 0 0 0.23698 1 1454 1454 0.30703 0 1 11878 2662 7473 7476 12164 12164 -0.09025105174168857 EFLPKDINSYF 11 Unmodified _EFLPKDINSYF_ 0 0 0 REV__nc|ENSG00000183814|Q5TKA1-3|LIN9 REV__nc|ENSG00000183814|Q5TKA1-3|LIN9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2305603027344 3 458.230966 1371.67107 0.048104 2.2043E-05 1.441 0.00066032 1.4891 0.00068236 458.56601507462625 124.99 0.14174 120.4 120.33 120.47 -4.5984 5 3 2 0 0 0 0.88781 1 24657 24657 0.026206 0.02025 1 448130 + 11879 18869 7474 7477 12165 12165 9.918157820720808E-05 EFLTRCTY 8 Unmodified _EFLTRCTY_ 0 0 0 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 516.7922973632812 2 516.744585 1031.47462 NaN NaN NaN NaN NaN NaN NaN 44.161 1 41.371 40.871 41.871 -2.79 0 0 0 0.21486 1 8292 8292 9.3474 0 1 + 11880 13711 7475 7478 12166 12166 -0.03986165216883819 EFNKNMRYQRF 11 Unmodified _EFNKNMRYQRF_ 0 0 0 REV__IQSEC2|p.Q1376Sfs*21|1|0.15|ENSG00000124313|chrX:53234560-53234560|G/-|frameshift_variant REV__IQSEC2|p.Q1376Sfs*21|1|0.15|ENSG00000124313|chrX:53234560-53234560|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.0001220703125 3 511.585749 1531.73542 0.2094 0.00010713 -1.7557 -0.00089817 -1.5463 -0.00079104 511.9190967014603 156.22 0.27513 156.22 156.11 156.38 0 10 7 2 0 0 0 0.96201 1 31345 31345 1.1098 0.65524 1 2438600 + 11881 15773 7476 7479 12167 12167 -0.009182052370078964 EFPHSSLV 8 Unmodified _EFPHSSLV_ 0 0 0 REV__ENSG00000139220|ENST00000549396|PPFIA2 REV__ENSG00000139220|ENST00000549396|PPFIA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2315673828125 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 125.03 1 120.39 119.89 120.89 -4.6495 0 0 0 0.22676 1 24056 24056 0.063987 0 1 + 11882 16510 7477 7480 12168 12168 -0.010864770279567892 EFPNVKDL 8 Unmodified _EFPNVKDL_ 0 0 0 ENSG00000111783|ENST00000392842|RFX4;nc|ENSG00000111783|Q33E94-2|RFX4;RFX4|p.V242Cfs*8|1|0.2|ENSG00000111783|chr12:106696337-106696337|G/-|frameshift_variant;nc|ENSG00000111783|Q33E94-4|RFX4;ENST00000536688.5_1_12:106995054-107126892:+|nuORF;nc|ENSG00000111783|Q33E94-3|RFX4 ENSG00000111783|ENST00000392842|RFX4 ENSG00000111783|ENST00000392842|RFX4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25390625 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 77.663 1 74.199 73.699 74.699 -3.4633 0 0 0 0.21039 1 15163 15163 16.942 0 1 11883 2646 7478 7481 12169 12169 0.00982078660570096 EFRGPTGES 9 Unmodified _EFRGPTGES_ 0 0 0 ENST00000578660.1_1_17:46124592-46124850:-|nuORF ENST00000578660.1_1_17:46124592-46124850:-|nuORF ENST00000578660.1_1_17:46124592-46124850:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2583312988281 2 490.227613 978.440674 NaN NaN NaN NaN NaN NaN NaN 86.506 1 82.556 82.056 83.056 -3.9503 0 0 0 0.22962 1 16468 16468 14.838 3.198 1 11884 11476 7479 7482 12170 12170 -0.04940870384291429 EFRNGYLW 8 Unmodified _EFRNGYLW_ 0 0 0 REV__ENSG00000204950|ENST00000378075|LRRC10B REV__ENSG00000204950|ENST00000378075|LRRC10B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.2173767089844 3 362.178536 1083.51378 NaN NaN NaN NaN NaN NaN NaN 13.264 1 13.264 12.764 13.764 0 0 0 0 0.23664 1 1903 1903 3.2813 1.539 1 + 11885 19574 7480 7483 12171 12171 -0.024636968710183282 EFRRNLPMHLR 11 Unmodified _EFRRNLPMHLR_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.R900Efs*2|2|0.38|ENSG00000124201|chr20:49255914-49255914|T/-|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2677307128906 3 490.269983 1467.78812 NaN NaN NaN NaN NaN NaN NaN 126.63 1 126.63 126.13 127.13 0 0 0 0 0.22632 1 24991 24991 5.4027 3.9953 1 11886 3299 7481 7484 12172 12172 0.0729379761646669 EFSEAGKESEM 11 Unmodified _EFSEAGKESEM_ 0 0 0 CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;ENSG00000184661|ENST00000330560|CDCA2 CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7579956054688 2 622.260993 1242.50743 0.87709 0.00054578 1.2124 0.00075446 2.0895 0.0013002 622.7619142809062 69.997 0.77692 66.817 66.188 66.965 -3.1796 24 21 2 0 0 0 0.7876 1 13620 13620 5.2969 0.39987 1 4385900 11887 458 7482 7485 12173 12173 -0.1041204767536783 EFSHQVKQF 9 Unmodified _EFSHQVKQF_ 0 0 0 REV__nc|ENSG00000204403|Q6UXS9|CASP12 REV__nc|ENSG00000204403|Q6UXS9|CASP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3169555664062 2 575.288005 1148.56146 0.30583 0.00017594 -0.61809 -0.00035558 -0.31226 -0.00017964 575.2875951276063 32.1 0.93643 32.1 31.53 32.467 0 63 26 4 0 0 0 0.52396 1 5853 5853 18.146 4.2403 1 29697000 + 11888 24241 7483 7486 12174 12174 -0.006880426707994047 EFSHQVKQF 9 Unmodified _EFSHQVKQF_ 0 0 0 REV__nc|ENSG00000204403|Q6UXS9|CASP12 REV__nc|ENSG00000204403|Q6UXS9|CASP12 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.288005 1148.56146 0.30583 0.00017594 -0.61809 -0.00035558 -0.31226 -0.00017964 575.2875951276063 32.1 0.93643 32.1 31.53 32.467 0 0.031311 -9.5456E-06 NaN 18.146 63 26 4 NaN NaN NaN NaN 0 NaN NaN 0 29697000 + 11889 24241 7483 7486 -0.006880426707994047 EFSHQVKQF 9 Unmodified _EFSHQVKQF_ 0 0 0 REV__nc|ENSG00000204403|Q6UXS9|CASP12 REV__nc|ENSG00000204403|Q6UXS9|CASP12 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 575.288005 1148.56146 -0.15599 -8.974E-05 -0.42672 -0.00024549 -0.58272 -0.00033523 575.2878759654265 34.383 0.52602 32.066 31.767 32.293 -2.3175 -0.003174 0.00021064 NaN 18.146 55 14 5 NaN NaN NaN NaN 0 NaN NaN 0 28396000 + 11890 24241 7483 7486 -0.006880426707994047 EFSHQVKQF 9 Unmodified _EFSHQVKQF_ 0 0 0 REV__nc|ENSG00000204403|Q6UXS9|CASP12 REV__nc|ENSG00000204403|Q6UXS9|CASP12 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 575.288005 1148.56146 0.28392 0.00016334 -0.69929 -0.00040229 -0.41537 -0.00023896 575.2876349529635 34.215 0.86238 32.068 31.532 32.394 -2.1468 -0.00087581 -0.00010297 NaN 18.146 68 24 5 NaN NaN NaN NaN 0 NaN NaN 0 46003000 + 11891 24241 7483 7486 -0.006880426707994047 EFSHQVKQF 9 Unmodified _EFSHQVKQF_ 0 0 0 REV__nc|ENSG00000204403|Q6UXS9|CASP12 REV__nc|ENSG00000204403|Q6UXS9|CASP12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.288005 1148.56146 0.37843 0.0002177 -0.74639 -0.00042939 -0.36796 -0.00021168 575.2875650356198 34.258 0.91094 32.042 31.492 32.403 -2.2158 -0.027262 -0.00015716 NaN 18.146 66 25 5 NaN NaN NaN NaN 0 NaN NaN 0 30904000 + 11892 24241 7483 7486 -0.006880426707994047 EFSLLEKGR 9 Unmodified _EFSLLEKGR_ 0 0 0 REV__nc|ENSG00000198556|Q5FWF6-3|ZNF789 REV__nc|ENSG00000198556|Q5FWF6-3|ZNF789 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20208740234375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 101.28 1 96.984 96.484 97.484 -4.297 0 0 0 0.23508 1 19379 19379 2.4985 0 1 + 11893 19421 7484 7487 12175 12175 0.0461712798901317 EFTELNQL 8 Unmodified _EFTELNQL_ 0 0 0 REV__ENSG00000172167|ENST00000305949|MTBP REV__ENSG00000172167|ENST00000305949|MTBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 496.779296875 2 497.248015 992.481476 -0.0097042 -4.8254E-06 2.9688 0.0014762 2.959 0.0014714 497.24917035615437 127.08 0.60039 122.38 122.15 122.75 -4.6998 22 16 2 0 0 0 0.87247 1 24417 24417 3.5871 1.8448 1 1809800 + 11894 18275 7485 7488 12176 12176 -0.015065290646703033 EFTELNQL 8 Unmodified _EFTELNQL_ 0 0 0 REV__ENSG00000172167|ENST00000305949|MTBP REV__ENSG00000172167|ENST00000305949|MTBP MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 497.248015 992.481476 0.18955 9.4255E-05 3.9813 0.0019797 4.1709 0.002074 497.2500123116888 122.43 0.43927 122.43 122.23 122.67 0 0.0097439 0.00033027 NaN 3.5871 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1712900 + 11895 18275 7485 7488 -0.015065290646703033 EFTELNQL 8 Unmodified _EFTELNQL_ 0 0 0 REV__ENSG00000172167|ENST00000305949|MTBP REV__ENSG00000172167|ENST00000305949|MTBP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 497.248015 992.481476 0.12694 6.3121E-05 3.0581 0.0015206 3.185 0.0015838 497.2493811324012 126.96 0.59065 122.35 122.02 122.61 -4.6172 -0.070237 -0.00058786 NaN 3.5871 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1633000 + 11896 18275 7485 7488 -0.015065290646703033 EFTELNQL 8 Unmodified _EFTELNQL_ 0 0 0 REV__ENSG00000172167|ENST00000305949|MTBP REV__ENSG00000172167|ENST00000305949|MTBP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 497.248015 992.481476 0.12825 6.3773E-05 4.1621 0.0020696 4.2903 0.0021334 497.24982466976314 127.31 0.60213 122.51 122.1 122.7 -4.7958 0.098167 0.00051004 NaN 3.5871 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1002100 + 11897 18275 7485 7488 -0.015065290646703033 EFTLEKNY 8 Unmodified _EFTLEKNY_ 0 0 0 ENST00000399070.3_2_18:32886564-32887857:+|nuORF ENST00000399070.3_2_18:32886564-32887857:+|nuORF ENST00000399070.3_2_18:32886564-32887857:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.256591796875 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 67.219 1 67.219 66.719 67.719 0 0 0 0 0.031048 1 12990 12990 58.679 6.4105 1 11898 9491 7486 7489 12177 12177 -0.022422425476179342 EFTLEKNY 8 Unmodified _EFTLEKNY_ 0 0 0 ENST00000399070.3_2_18:32886564-32887857:+|nuORF ENST00000399070.3_2_18:32886564-32887857:+|nuORF ENST00000399070.3_2_18:32886564-32887857:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2571411132812 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 70.875 1 67.296 66.796 67.796 -3.5798 0 0 0 0.17344 1 13361 13361 34.102 5.6156 1 11899 9491 7486 7489 12178 12178 -0.022422425476179342 EFTMIELYQA 10 Unmodified _EFTMIELYQA_ 0 0 0 tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1 tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1 tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7724609375 2 622.797014 1243.57948 NaN NaN NaN NaN NaN NaN NaN 150.39 1 145.19 144.69 145.69 -5.1994 0 0 0 2.8426 1 29142 29142 0.063865 0.032455 1 11900 25898 7487 7490 12179 12179 -0.03257088530972396 EFVDRFNHS 9 Unmodified _EFVDRFNHS_ 0 0 0 STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3292846679688 2 575.767437 1149.52032 0.26553 0.00015288 1.8744 0.0010792 2.1399 0.0012321 575.76786879157 72.753 0.31044 72.753 72.575 72.886 0 11 8 2 0 0 0 0.19983 2 14080 14080;14082 20.454 1.1966 1 1655900 11901 3011 7488 7491 12180;12181 12180 -0.04845803710304608 EFVQKFQPGKH 11 Unmodified _EFVQKFQPGKH_ 0 0 0 REV__nc|ENSG00000136940|Q13371-2|PDCL REV__nc|ENSG00000136940|Q13371-2|PDCL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.1219787597656 3 448.906816 1343.69862 0.17591 7.8969E-05 -1.8544 -0.00083244 -1.6785 -0.00075347 448.9058884279516 20.457 0.35081 19.06 18.829 19.18 -1.3966 17 9 3 0 0 0 0.96214 1 3392 3392 0.50596 0.50596 1 379060 + 11902 16366 7489 7492 12182 12182 0.0405186620873792 EFVQKFQPGKH 11 Unmodified _EFVQKFQPGKH_ 0 0 0 REV__nc|ENSG00000136940|Q13371-2|PDCL REV__nc|ENSG00000136940|Q13371-2|PDCL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 448.906816 1343.69862 -0.31208 -0.0001401 -2.8076 -0.0012604 -3.1197 -0.0014005 449.23985158756244 20.144 0.27827 18.819 18.698 18.976 -1.3251 -0.093454 -0.00077788 NaN 0.50596 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 672050 + 11903 16366 7489 7492 0.0405186620873792 EFVQKFQPGKH 11 Unmodified _EFVQKFQPGKH_ 0 0 0 REV__nc|ENSG00000136940|Q13371-2|PDCL REV__nc|ENSG00000136940|Q13371-2|PDCL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 448.906816 1343.69862 -0.92524 -0.00041535 -1.6731 -0.00075108 -2.5984 -0.0011664 448.90601770229847 20.579 0.31625 18.858 18.659 18.975 -1.7211 -0.054202 0.00074995 NaN 0.50596 14 8 3 NaN NaN NaN NaN 0 NaN NaN 0 389900 + 11904 16366 7489 7492 0.0405186620873792 EFWRAVYDWMY 11 Unmodified _EFWRAVYDWMY_ 0 0 0 REV__ENSG00000083097|ENST00000349129|DOP1A REV__ENSG00000083097|ENST00000349129|DOP1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2822875976562 3 522.567583 1564.68092 -0.48973 -0.00025592 2.3005 0.0012021 1.8107 0.00094623 522.9025074624517 84.766 0.10614 80.856 80.768 80.874 -3.9093 4 2 2 0 0 0 0.96147 1 16117 16117 2.8433 1.5136 1 439500 + 11905 14447 7490 7493 12183 12183 -0.07883217108405915 EFYACRQP 8 Unmodified _EFYACRQP_ 0 0 0 REV__ENSG00000108551|ENST00000225688|RASD1 REV__ENSG00000108551|ENST00000225688|RASD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 507.3059997558594 2 507.229102 1012.44365 NaN NaN NaN NaN NaN NaN NaN 147.56 1 142.5 142 143 -5.0595 0 0 0 0.21486 1 28570 28570 9.3474 0.75416 1 + 11906 15128 7491 7494 12184 12184 -0.06207318531130568 EFYREHVKPLF 11 Unmodified _EFYREHVKPLF_ 0 0 0 ENST00000582669.1_1_17:28600488-28612498:-|nuORF;ENST00000579325.1_1_17:28601041-28612498:-|nuORF;ENSG00000108578|ENST00000261714|BLMH ENST00000582669.1_1_17:28600488-28612498:-|nuORF ENST00000582669.1_1_17:28600488-28612498:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.2308654785156 3 488.925988 1463.75613 0.21057 0.00010295 3.9632 0.0019377 4.1737 0.0020407 488.92865520108916 140.33 0.10544 135.34 135.29 135.39 -4.9877 4 2 2 0 0 0 0.88924 1 27012 27012 1.2503 0.665 1 1417200 11907 2486 7492 7495 12185 12185 0.042807084143305474 EGAAASFP 8 Unmodified _EGAAASFP_ 0 0 0 REV__ENST00000377518.3_1_9:46687596-46687819:-|nuORF REV__ENST00000377518.3_1_9:46687596-46687819:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20458984375 2 375.176861 748.339169 NaN NaN NaN NaN NaN NaN NaN 23.691 1 23.691 23.191 24.191 0 0 0 0 0.21486 1 4051 4051 8.5933 1.304 1 + 11908 21100 7493 7496 12186 12186 -0.045066970161883546 EGAAASVAAPA 11 Unmodified _EGAAASVAAPA_ 0 0 0 REV__ENST00000440223.5_1_2:238875581-238881735:+|nuORF REV__ENST00000440223.5_1_2:238875581-238881735:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.21942138671875 2 457.732532 913.45051 0.38038 0.00017411 -0.58037 -0.00026566 -0.19999 -9.1542E-05 457.732365262167 33.86 0.49082 31.644 31.389 31.879 -2.2158 19 13 2 0 0 0 0.68099 1 5861 5861 13.042 2.2185 1 795070 + 11909 21703 7494 7497 12187 12187 -0.009676823789163791 EGAAEVVQIM 10 Unmodified _EGAAEVVQIM_ 0 0 0 ENSG00000124143|ENST00000373345|ARHGAP40 ENSG00000124143|ENST00000373345|ARHGAP40 ENSG00000124143|ENST00000373345|ARHGAP40 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7006225585938 2 523.762975 1045.5114 NaN NaN NaN NaN NaN NaN NaN 153.68 1 148.91 148.41 149.41 -4.7684 0 0 0 0.17567 1 30541 30541 32.786 2.5609 1 11910 3292 7495 7498 12188 12188 -0.009539133909811426 EGAANWFLSA 10 Unmodified _EGAANWFLSA_ 0 0 0 REV__nc|ENSG00000123473|Q15468|STIL REV__nc|ENSG00000123473|Q15468|STIL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2747192382812 2 533.253631 1064.49271 NaN NaN NaN NaN NaN NaN NaN 116.12 1 116.12 115.62 116.62 0 0 0 0 0.16651 1 22862 22862 34.402 0 1 + 11911 15732 7496 7499 12189 12189 -0.036957069705295 EGAASVSE 8 Unmodified _EGAASVSE_ 0 0 0 ENSG00000187122|ENST00000266058|SLIT1;SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant;nc|ENSG00000187122|O75093-2|SLIT1 ENSG00000187122|ENST00000266058|SLIT1 ENSG00000187122|ENST00000266058|SLIT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21136474609375 2 375.169233 748.323913 NaN NaN NaN NaN NaN NaN NaN 24.963 1 23.429 22.929 23.929 -1.5342 0 0 0 0.2343 1 4085 4085 0.25148 0.18749 1 11912 7097 7497 7500 12190 12190 -0.06031608604030225 EGAEYFRPP 9 Unmodified _EGAEYFRPP_ 0 0 0 REV__ENST00000494101.1_1_16:30680055-30680963:+|nuORF REV__ENST00000494101.1_1_16:30680055-30680963:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2837524414062 2 533.253631 1064.49271 NaN NaN NaN NaN NaN NaN NaN 80.963 1 77.275 76.775 77.775 -3.6879 0 0 0 0.17061 1 15430 15430 27.629 1.3607 1 + 11913 17272 7498 7501 12191 12191 -0.036957069705295 EGAHIILHQA 10 Unmodified _EGAHIILHQA_ 0 0 0 REV__nc|ENSG00000167766|P51522-2|ZNF83 REV__nc|ENSG00000167766|P51522-2|ZNF83 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7945556640625 2 544.795998 1087.57744 0.26328 0.00014344 2.4974 0.0013606 2.7607 0.001504 544.7970903631751 73.101 0.57092 69.474 69.164 69.735 -3.6275 21 12 2 0 0 0 0.61964 1 13804 13804 18.146 1.2041 1 2413600 + 11914 17968 7499 7502 12192 12192 0.03715663566117655 EGAHIILHQA 10 Unmodified _EGAHIILHQA_ 0 0 0 REV__nc|ENSG00000167766|P51522-2|ZNF83 REV__nc|ENSG00000167766|P51522-2|ZNF83 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 544.795998 1087.57744 0.0893 4.865E-05 3.189 0.0017374 3.2783 0.001786 544.7976394502523 69.746 0.32565 69.746 69.56 69.886 0 0.1442 0.00039443 NaN 18.146 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2546400 + 11915 17968 7499 7502 0.03715663566117655 EGAHIILHQA 10 Unmodified _EGAHIILHQA_ 0 0 0 REV__nc|ENSG00000167766|P51522-2|ZNF83 REV__nc|ENSG00000167766|P51522-2|ZNF83 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 544.795998 1087.57744 0.098951 5.3908E-05 2.983 0.0016251 3.0819 0.001679 544.7976401301589 72.926 0.50337 69.615 69.275 69.778 -3.3107 0.013123 0.00016993 NaN 18.146 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2915900 + 11916 17968 7499 7502 0.03715663566117655 EGAHIILHQA 10 Unmodified _EGAHIILHQA_ 0 0 0 REV__nc|ENSG00000167766|P51522-2|ZNF83 REV__nc|ENSG00000167766|P51522-2|ZNF83 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 544.795998 1087.57744 0.45256 0.00024655 2.3777 0.0012953 2.8302 0.0015419 544.7972818519776 73.112 0.54613 69.574 69.303 69.849 -3.5385 -0.028683 -0.00048958 NaN 18.146 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3227600 + 11917 17968 7499 7502 0.03715663566117655 EGAMQGPTPPP 11 Unmodified _EGAMQGPTPPP_ 0 0 0 ZNF142|p.A873Lfs*14|1|0.2|ENSG00000115568|chr2:218643899-218643899|C/-|frameshift_variant;ZNF142|p.G1052Dfs*20|3|0.38|ENSG00000115568|chr2:218643361-218643361|C/-|frameshift_variant;ZNF142|p.G1126Afs*25|1|0.14|ENSG00000115568|chr2:218643139-218643139|C/-|frameshift_variant;ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142 ZNF142|p.A873Lfs*14|1|0.2|ENSG00000115568|chr2:218643899-218643899|C/-|frameshift_variant ZNF142|p.A873Lfs*14|1|0.2|ENSG00000115568|chr2:218643899-218643899|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2650756835938 2 541.252774 1080.491 0.058389 3.1603E-05 0.39507 0.00021383 0.45346 0.00024544 541.7545358746637 56.497 0.44976 53.603 53.337 53.786 -2.8944 14 12 2 0 0 0 0.77729 1 10784 10784 18.373 0 1 828870 11918 2867 7500 7503 12193 12193 -0.0460308405079104 EGAPAPPPPP 10 Unmodified _EGAPAPPPPP_ 0 0 0 ENSG00000095539|ENST00000210633|SEMA4G;nc|ENSG00000095539|Q9NTN9|SEMA4G ENSG00000095539|ENST00000210633|SEMA4G ENSG00000095539|ENST00000210633|SEMA4G MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2384033203125 2 465.239993 928.465432 0.20162 9.3804E-05 -1.3933 -0.00064823 -1.1917 -0.00055443 465.239340088142 37.4 0.93559 37.4 36.887 37.823 0 41 26 2 0 0 0 0.40256 1 6937 6937 30.637 0 1 873820 11919 1862 7501 7504 12194 12194 -0.0016619051091311121 EGAPPAAHV 9 Unmodified _EGAPPAAHV_ 0 0 0 nc|ENSG00000166473|Q7Z442-3|PKD1L2;nc|ENSG00000166473|Q7Z442-4|PKD1L2 nc|ENSG00000166473|Q7Z442-3|PKD1L2 nc|ENSG00000166473|Q7Z442-3|PKD1L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2374267578125 2 424.716685 847.418816 0.12273 5.2124E-05 -0.11838 -5.0279E-05 0.0043444 1.8452E-06 424.71669880920615 33.557 0.58861 31.341 31.044 31.633 -2.2158 26 16 2 0 0 0 0.52414 1 5869 5869 18.135 0 1 770570 11920 12439 7502 7505 12195 12195 -0.010996303421961784 EGAQAVFLGA 10 Unmodified _EGAQAVFLGA_ 0 0 0 REV__COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant REV__COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7746276855469 2 481.750724 961.486896 NaN NaN NaN NaN NaN NaN NaN 39.143 1 39.143 38.643 39.643 0 0 0 0 0.21574 1 7263 7263 25.399 0 1 + 11921 13477 7503 7506 12196 12196 0.0046119451779986775 EGCCCCWRCC 10 Unmodified _EGCCCCWRCC_ 0 0 0 REV__nc|ENSG00000011021|P51797-3|CLCN6 REV__nc|ENSG00000011021|P51797-3|CLCN6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 388.84967041015625 3 389.110661 1164.31015 NaN NaN NaN NaN NaN NaN NaN 26.108 1 24.473 23.973 24.973 -1.6347 0 0 0 2.8426 1 4320 4320 0 0 1 + 11922 13444 7504 7507 12197 12197 -0.26543031558298935 EGCRPGFAAR 10 Unmodified _EGCRPGFAAR_ 0 0 0 ENST00000416596.5_1_6:30172488-30181180:-|nuORF;ENST00000453195.5_1_6:30168852-30181180:-|nuORF ENST00000416596.5_1_6:30172488-30181180:-|nuORF ENST00000416596.5_1_6:30172488-30181180:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 355.1749267578125 3 355.174909 1062.5029 NaN NaN NaN NaN NaN NaN NaN 92.379 1 88.454 87.954 88.954 -3.9251 0 0 0 0.22588 1 18092 18092 0.62683 0 1 11923 9622 7505 7508 12198 12198 -0.02585422516926883 EGDVLVNVL 9 Unmodified _EGDVLVNVL_ 0 0 0 REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8 REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7387390136719 2 479.266207 956.517862 0.049319 2.3637E-05 0.028126 1.348E-05 0.077445 3.7117E-05 479.26613512891817 129.15 0.61899 124.52 124.15 124.77 -4.6292 27 17 2 0 0 0 0.54076 1 25432 25432 34.102 0 1 1678300 + 11924 15363 7506 7509 12199 12199 0.03786347832055981 EGDVLVNVL 9 Unmodified _EGDVLVNVL_ 0 0 0 REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8 REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7385559082031 2 479.266207 956.517862 0.087597 4.1982E-05 -0.0071995 -3.4505E-06 0.080398 3.8532E-05 479.2661089148766 129.36 0.62015 124.54 124.23 124.85 -4.817 24 17 2 0 0 0 0.69192 1 24793 24793 14.838 4.0143 1 2054700 + 11925 15363 7506 7509 12200 12200 0.03786347832055981 EGEDGDVKCL 10 Unmodified _EGEDGDVKCL_ 0 0 0 ENSG00000196233|ENST00000421806|LCOR ENSG00000196233|ENST00000421806|LCOR ENSG00000196233|ENST00000421806|LCOR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.268798828125 2 532.731871 1063.44919 -0.19254 -0.00010257 2.2086 0.0011766 2.016 0.001074 532.7332062501791 105.24 0.52805 100.98 100.67 101.2 -4.2638 28 14 3 0 0 0 0.84281 1 20698 20698 2.9952 0 1 1932300 11926 7249 7507 7510 12201 12201 -0.0799968452995472 EGELLKKY 8 Unmodified _EGELLKKY_ 0 0 0 REV__ENST00000551916.1_1_12:62273577-62274426:+|nuORF REV__ENST00000551916.1_1_12:62273577-62274426:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2760009765625 2 490.276575 978.538597 -0.083954 -4.1161E-05 -0.021676 -1.0627E-05 -0.10563 -5.1788E-05 490.2763197484059 52.622 0.40691 49.738 49.522 49.929 -2.8837 16 11 2 0 0 0 0.70613 1 10043 10043 13.508 0 1 811990 + 11927 22940 7508 7511 12202 12202 0.04846938211710494 EGELVSTDP 9 Unmodified _EGELVSTDP_ 0 0 0 nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;AXIN1|p.T79Pfs*5|1|0.56|ENSG00000103126|chr16:346792-346792|G/-|frameshift_variant;AXIN1|p.G265Efs*149|1|0.09|ENSG00000103126|chr16:346234-346234|G/-|frameshift_variant;AXIN1|p.P432Qfs*48|1|0.43|ENSG00000103126|chr16:298211-298211|G/-|frameshift_variant;AXIN1|p.K641Rfs*64|1|0.46|ENSG00000103126|chr16:297089-297089|T/-|frameshift_variant nc|ENSG00000103126|O15169-2|AXIN1 nc|ENSG00000103126|O15169-2|AXIN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1510009765625 3 316.150312 945.429106 NaN NaN NaN NaN NaN NaN NaN 47.425 1 44.483 43.983 44.983 -2.9421 0 0 0 0.23508 1 8648 8648 4.5289 0.93237 1 11928 2166 7509 7512 12203 12203 -0.045791121982802 EGEPFCCM 8 Unmodified _EGEPFCCM_ 0 0 0 REV__ENST00000490303.5_1_3:182583321-182631816:+|nuORF REV__ENST00000490303.5_1_3:182583321-182631816:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2322692871094 2 458.155899 914.297246 NaN NaN NaN NaN NaN NaN NaN 69.904 1 69.904 69.404 70.404 0 0 0 0 0.23749 1 13536 13536 0.0082765 0 1 + 11929 14128 7510 7513 12204 12204 -0.1633308008288168 EGEQVAIVA 9 Unmodified _EGEQVAIVA_ 0 0 0 nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143 nc|ENSG00000166478|P52747-2|ZNF143 nc|ENSG00000166478|P52747-2|ZNF143 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2300109863281 2 458.242732 914.470912 0.056346 2.582E-05 0.15028 6.8867E-05 0.20663 9.4687E-05 458.24268388659175 92.095 1.156 92.095 91.627 92.783 0 62 32 3 0 0 0 0.31728 1 17934 17934 4.477 1.9785 1 5110800 11930 5728 7511 7514 12205 12205 0.010254882809135779 EGERARAAS 9 Unmodified _EGERARAAS_ 0 0 0 TNIP2|p.M130V|1|0.25|ENSG00000168884|chr4:2747834-2747834|T/C|missense_variant;ENST00000507686.1_1_4:2747118-2749660:-|nuORF;ENST00000511352.1_1_4:2749267-2757702:-|nuORF;nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2 TNIP2|p.M130V|1|0.25|ENSG00000168884|chr4:2747834-2747834|T/C|missense_variant TNIP2|p.M130V|1|0.25|ENSG00000168884|chr4:2747834-2747834|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1611633300781 3 316.161545 945.462806 NaN NaN NaN NaN NaN NaN NaN 16.678 1 15.455 14.955 15.955 -1.2227 0 0 0 0.23508 1 2412 2412 1.0715 0 1 11931 5943 7512 7515 12206 12206 -0.012106459158644611 EGFRAMRL 8 Unmodified _EGFRAMRL_ 0 0 0 REV__ENST00000533229.1_1_1:181452799-181620578:+|nuORF REV__ENST00000533229.1_1_1:181452799-181620578:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2593994140625 2 490.260736 978.50692 NaN NaN NaN NaN NaN NaN NaN 164.69 1 159.64 159.14 160.14 -5.0446 0 0 0 0.23025 1 32137 32137 0.62683 0 1 + 11932 22795 7513 7516 12207 12207 0.016806669767674975 EGGAWLTHPL 10 Unmodified _EGGAWLTHPL_ 0 0 0 ENST00000297632.7_2_8:125384735-125384801:-|nuORF ENST00000297632.7_2_8:125384735-125384801:-|nuORF ENST00000297632.7_2_8:125384735-125384801:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2782592773438 2 540.777274 1079.53999 -0.1847 -9.988E-05 1.6973 0.00091788 1.5126 0.000818 541.2797446415681 110.12 1.4585 105.74 104.92 106.38 -4.3776 109 41 4 0 0 0 0.35262 1 21545 21545 5.8681 0 1 5102700 11933 8522 7514 7517 12208 12208 0.003405723004561878 EGGDERGDCCY 11 Unmodified _EGGDERGDCCY_ 0 0 0 REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1 REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2814331054688 2 602.205695 1202.39684 NaN NaN NaN NaN NaN NaN NaN 108.81 1 104.63 104.13 105.13 -4.1826 0 0 0 0.23634 1 20941 20941 3.2813 1.4371 1 + 11934 15129 7515 7518 12209 12209 -0.19626590935217791 EGGFKLFY 8 Unmodified _EGGFKLFY_ 0 0 0 IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant;ENSG00000174498|ENST00000327987|IGDCC3 IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23626708984375 2 480.744911 959.475269 -0.015489 -7.4462E-06 -0.26555 -0.00012766 -0.28104 -0.00013511 480.74503624038414 85.533 0.46635 85.533 85.357 85.824 0 16 12 2 0 0 0 0.93477 1 16686 16686 12.532 1.7076 1 920260 11935 6352 7516 7519 12210 12210 -0.00609002505530043 EGGFYSGIQ 9 Unmodified _EGGFYSGIQ_ 0 0 0 REV__ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant REV__ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73260498046875 2 479.219257 956.423961 -0.24494 -0.00011738 -1.6211 -0.00077687 -1.8661 -0.00089425 479.2180948157619 105.32 0.63408 101.06 100.67 101.31 -4.2638 41 17 3 0 0 0 0.66788 1 20711 20711 22.736 0 1 1577100 + 11936 13864 7517 7520 12211 12211 -0.055993712702274934 EGGGRRKR 8 Unmodified _EGGGRRKR_ 0 0 0 ENST00000548860.5_1_12:49209223-49210729:+|nuORF ENST00000548860.5_1_12:49209223-49210729:+|nuORF ENST00000548860.5_1_12:49209223-49210729:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2385559082031 2 458.265199 914.515845 NaN NaN NaN NaN NaN NaN NaN 98.792 1 98.792 98.292 99.292 0 0 0 0 0.20618 1 19367 19367 20.454 0.039092 1 11937 11154 7518 7521 12212 12212 0.05516776657475475 EGGIDGPQIA 10 Unmodified _EGGIDGPQIA_ 0 0 0 ENST00000468090.5_1_21:45179072-45179237:+|nuORF ENST00000468090.5_1_21:45179072-45179237:+|nuORF ENST00000468090.5_1_21:45179072-45179237:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7391357421875 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 59.853 1 59.853 59.353 60.353 0 0 0 0 0.11552 1 11469 11469 49.554 1.8056 1 11938 10162 7519 7522 12213 12213 -0.018436997244634767 EGGKSGKS 8 Unmodified _EGGKSGKS_ 0 0 0 ENSG00000150907|ENST00000379561|FOXO1 ENSG00000150907|ENST00000379561|FOXO1 ENSG00000150907|ENST00000379561|FOXO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2166748046875 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 112.63 1 112.63 112.13 113.13 0 0 0 0 0.23366 1 22152 22152 0.0082765 0 1 11939 4841 7520 7523 12214 12214 -0.012719096131831975 EGGMLQITN 9 Unmodified _EGGMLQITN_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;FRAS1|p.V2385Sfs*37|1|0.28|ENSG00000138759|chr4:78466329-78466329|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4-5|FRAS1 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.775634765625 2 481.734217 961.453881 NaN NaN NaN NaN NaN NaN NaN 34.827 1 34.827 34.327 35.327 0 0 0 0 0.13259 1 6382 6382 32.786 2.1491 1 11940 4208 7521 7524 12215 12215 -0.02838755596565079 EGHLKCSV 8 Unmodified _EGHLKCSV_ 0 0 0 REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2174987792969 2 436.71837 871.422187 0.028511 1.2451E-05 0.82093 0.00035851 0.84944 0.00037096 436.71892911900625 134.21 0.55862 129.39 129.06 129.62 -4.8175 20 15 2 0 0 0 0.95515 1 25780 25780 15.847 7.937 1 1457800 + 11941 19181 7522 7525 12216 12216 -0.01866703559835514 EGHLKCSV 8 Unmodified _EGHLKCSV_ 0 0 0 REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.71837 871.422187 -0.13737 -5.9992E-05 1.3783 0.00060193 1.2409 0.00054194 436.71890655220693 133.94 0.56903 129.3 128.96 129.53 -4.6399 -0.045544 0.00016077 NaN 15.847 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2056500 + 11942 19181 7522 7525 -0.01866703559835514 EGKIIAEYTK 10 Unmodified _EGKIIAEYTK_ 0 0 0 REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1 REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.318603515625 2 576.318971 1150.62339 -0.082816 -4.7728E-05 0.23109 0.00013318 0.14827 8.5453E-05 576.3190559253896 47.337 0.62125 44.387 44.087 44.708 -2.9499 56 17 4 0 0 0 0.57502 1 8698 8698 20.581 3.1383 1 16653000 + 11943 25358 7523 7526 12217 12217 0.054102639576512956 EGKVNPVW 8 Unmodified _EGKVNPVW_ 0 0 0 REV__POC1A|p.E284Sfs*12|1|0.2|ENSG00000164087|chr3:52125145-52125145|C/-|frameshift_variant REV__POC1A|p.E284Sfs*12|1|0.2|ENSG00000164087|chr3:52125145-52125145|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24969482421875 2 464.747985 927.481417 -0.080844 -3.7572E-05 0.0012506 5.8119E-07 -0.079594 -3.6991E-05 464.7479487037125 57.086 0.55929 57.086 56.916 57.475 0 24 15 2 0 0 0 0.25515 1 10919 10919 39.957 3.9131 1 1562400 + 11944 17649 7524 7527 12218 12218 0.01477515725991907 EGKVTLTGD 9 Unmodified _EGKVTLTGD_ 0 0 0 REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23846435546875 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 60.696 1 60.696 60.196 61.196 0 0 0 0 0.19343 1 11641 11641 1.2148 0 1 + 11945 25363 7525 7528 12219 12219 0.0033318441827532297 EGKYWNYGY 9 Unmodified _EGKYWNYGY_ 0 0 0 REV__nc|ENSG00000007306|Q14002-2|CEACAM7 REV__nc|ENSG00000007306|Q14002-2|CEACAM7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2597045898438 2 590.258914 1178.50327 NaN NaN NaN NaN NaN NaN NaN 48.924 1 48.924 48.424 49.424 0 0 0 0 0.23508 1 9241 9241 8.5933 1.8701 1 + 11946 13886 7526 7529 12220 12220 -0.07883724316093321 EGLEELLN 8 Unmodified _EGLEELLN_ 0 0 0 REV__ENSG00000198483|ENST00000355594|ANKRD35 REV__ENSG00000198483|ENST00000355594|ANKRD35 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23828125 2 458.73474 915.454927 -0.049394 -2.2659E-05 0.21924 0.00010057 0.16985 7.7915E-05 458.7347836434944 106.82 0.73093 102.41 101.99 102.72 -4.4121 35 20 2 0 0 0 0.35245 1 20533 20533 27.629 0 1 3166700 + 11947 19416 7527 7530 12221 12221 -0.0061821795599144025 EGLEGLAPA 9 Unmodified _EGLEGLAPA_ 0 0 0 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 428.1632385253906 2 428.724175 855.433798 -0.16946 -7.2652E-05 -0.19319 -8.2827E-05 -0.36266 -0.00015548 428.72413674509113 93.02 0.9269 89.176 88.783 89.71 -3.844 37 26 2 0 0 0 0.77732 1 17930 17930 18.135 0 1 2109400 11948 6096 7528 7531 12222 12222 0.0002981673512749694 EGLEGLAPA 9 Unmodified _EGLEGLAPA_ 0 0 0 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 428.724175 855.433798 -0.0047476 -2.0354E-06 0.44486 0.00019072 0.44011 0.00018869 428.7240947856078 89.157 0.88049 89.157 88.718 89.599 0 0.040789 0.00044112 NaN 18.135 32 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2131900 11949 6096 7528 7531 0.0002981673512749694 EGLEGLAPA 9 Unmodified _EGLEGLAPA_ 0 0 0 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 428.724175 855.433798 -0.15478 -6.6358E-05 -0.065743 -2.8186E-05 -0.22052 -9.4544E-05 428.724122068202 93.048 1.0013 89.057 88.587 89.588 -3.9907 -0.058987 3.3032E-06 NaN 18.135 40 28 2 NaN NaN NaN NaN 0 NaN NaN 0 1774600 11950 6096 7528 7531 0.0002981673512749694 EGLEGLAPA 9 Unmodified _EGLEGLAPA_ 0 0 0 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 428.724175 855.433798 0.20171 8.6479E-05 -0.14923 -6.398E-05 0.052478 2.2498E-05 428.7240476968493 93.218 0.75162 89.074 88.696 89.448 -4.1435 -0.041641 -6.8287E-05 NaN 18.135 29 21 2 NaN NaN NaN NaN 0 NaN NaN 0 862910 11951 6096 7528 7531 0.0002981673512749694 EGLENKPVA 9 Unmodified _EGLENKPVA_ 0 0 0 nc|ENSG00000138080|Q9Y6C2-2|EMILIN1;ENSG00000138080|ENST00000380320|EMILIN1 nc|ENSG00000138080|Q9Y6C2-2|EMILIN1 nc|ENSG00000138080|Q9Y6C2-2|EMILIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7234191894531 2 478.756007 955.497461 0.024729 1.1839E-05 -0.76169 -0.00036466 -0.73696 -0.00035282 478.7557900168093 49.483 0.41201 46.484 46.242 46.654 -2.999 15 11 2 0 0 0 0.81703 1 9042 9042 14.838 1.3304 1 574650 11952 4147 7529 7532 12223 12223 0.017931771722373924 EGLEVHFV 8 Unmodified _EGLEVHFV_ 0 0 0 nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5692045-5696439:-|nuORF;ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1 nc|ENSG00000196365|P36776-2|LONP1 nc|ENSG00000196365|P36776-2|LONP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24176025390625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 60.785 1 60.785 60.285 61.285 0 0 0 0 0.23025 1 11661 11661 0.68139 0 1 11953 7259 7530 7533 12224 12224 -0.0016619051090174253 EGLEVHFV 8 Unmodified _EGLEVHFV_ 0 0 0 nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5692045-5696439:-|nuORF;ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1 nc|ENSG00000196365|P36776-2|LONP1 nc|ENSG00000196365|P36776-2|LONP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2415771484375 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 63.72 1 60.305 59.805 60.805 -3.4158 0 0 0 0.23487 1 11909 11909 0.68139 0 1 11954 7259 7530 7533 12225 12225 -0.0016619051090174253 EGLKFVEGV 9 Unmodified _EGLKFVEGV_ 0 0 0 NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant;nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3 NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2718811035156 2 489.26875 976.522947 0.12069 5.9052E-05 0.10807 5.2876E-05 0.22877 0.00011193 489.2687559544024 115.19 1.1693 110.72 110.29 111.46 -4.4726 114 33 5 0 0 0 0.045725 2 22742 22699;22742 72.968 8.5106 1 125270000 11955 7256 7531 7534 12226;12227 12227 0.03374651694673503 EGLKFVEGV 9 Unmodified _EGLKFVEGV_ 0 0 0 NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant;nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3 NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2603454589844 2 489.26875 976.522947 0.33794 0.00016534 -0.12351 -6.0431E-05 0.21442 0.00010491 489.2686277154148 115.3 1.4656 110.75 110.33 111.79 -4.555 122 41 5 0 0 0 0.12612 1 22186 22186 47.594 3.7361 1 84306000 11956 7256 7531 7534 12228 12228 0.03374651694673503 EGLKFVEGV 9 Unmodified _EGLKFVEGV_ 0 0 0 NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant;nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3 NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2542419433594 2 489.26875 976.522947 0.27292 0.00013353 -0.10128 -4.9551E-05 0.17165 8.3981E-05 489.26864486926365 115.09 1.2996 110.78 110.31 111.61 -4.3136 124 36 5 0 0 0 0.072372 2 22170 22149;22170 63.961 10.557 1 87505000 11957 7256 7531 7534 12229;12230 12230 0.03374651694673503 EGLTVVQQ 8 Unmodified _EGLTVVQQ_ 0 0 0 REV__ENST00000522431.5_1_19:48752902-48753010:-|nuORF REV__ENST00000522431.5_1_19:48752902-48753010:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2358093261719 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 73.856 1 70.262 69.762 70.762 -3.594 0 0 0 0.21452 1 14020 14020 13.508 0 1 + 11958 22659 7532 7535 12231 12231 0.019015056264720442 EGLWAIYVD 9 Unmodified _EGLWAIYVD_ 0 0 0 REV__tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1 REV__tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2644653320312 2 533.266207 1064.51786 NaN NaN NaN NaN NaN NaN NaN 101 1 101 100.5 101.5 0 0 0 0 0.23508 1 19816 19816 11.64 2.2929 1 + 11959 25217 7533 7536 12232 12232 -0.011816521679747893 EGLWDSPHGP 10 Unmodified _EGLWDSPHGP_ 0 0 0 REV__ENST00000481405.1_1_3:45077046-45077160:+|nuORF REV__ENST00000481405.1_1_3:45077046-45077160:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7682495117188 2 547.748713 1093.48287 0.073449 4.0232E-05 -1.5103 -0.00082728 -1.4369 -0.00078704 547.7480840965769 52.395 0.77341 49.308 48.881 49.654 -3.0876 34 21 2 0 0 0 0.871 1 9601 9601 10.074 0 1 1691500 + 11960 22176 7534 7537 12233 12233 -0.0601289497592461 EGMDDFCY 8 Unmodified _EGMDDFCY_ 0 0 0 FAM47B|p.R59C|1|0.37|ENSG00000189132|chrX:34943006-34943006|C/T|missense_variant FAM47B|p.R59C|1|0.37|ENSG00000189132|chrX:34943006-34943006|C/T|missense_variant FAM47B|p.R59C|1|0.37|ENSG00000189132|chrX:34943006-34943006|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2676086425781 2 490.162236 978.309919 NaN NaN NaN NaN NaN NaN NaN 125.43 1 120.78 120.28 121.28 -4.6495 0 0 0 0.2396 1 24133 24133 0.12286 0 1 11961 11797 7535 7538 12234 12234 -0.1801034541899753 EGMHIREHRRY 11 Unmodified _EGMHIREHRRY_ 0 0 0 REV__ENSG00000171295|ENST00000304060|ZNF440 REV__ENSG00000171295|ENST00000304060|ZNF440 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.39794921875 2 742.370401 1482.72625 NaN NaN NaN NaN NaN NaN NaN 61.64 1 61.64 61.14 62.14 0 0 0 0 0.2367 1 11821 11821 2.9952 0.26005 1 + 11962 18216 7536 7539 12235 12235 0.004194461973384023 EGNEKVIK 8 Unmodified _EGNEKVIK_ 0 0 0 REV__KIF21A|p.L1270Sfs*13|1|0.12|ENSG00000139116|chr12:39318174-39318175|-/G|frameshift_variant REV__KIF21A|p.L1270Sfs*13|1|0.12|ENSG00000139116|chr12:39318174-39318175|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22589111328125 2 458.758549 915.502546 -0.079253 -3.6358E-05 0.19587 8.9858E-05 0.11662 5.35E-05 458.75867729276644 40.932 0.41648 38.392 38.137 38.554 -2.5398 17 11 2 0 0 0 0.86212 1 7346 7346 4.2837 0 1 968460 + 11963 16500 7537 7540 12236 12236 0.041414810348555875 EGNQDKFSY 9 Unmodified _EGNQDKFSY_ 0 0 0 nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6 nc|ENSG00000091409|P23229-5|ITGA6 nc|ENSG00000091409|P23229-5|ITGA6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7758178710938 2 544.238178 1086.4618 NaN NaN NaN NaN NaN NaN NaN 65.781 1 62.323 61.823 62.823 -3.4581 0 0 0 0.23508 1 12318 12318 9.3831 0.63772 1 11964 12249 7538 7541 12237 12237 -0.07796905075406357 EGPCEENSC 9 Unmodified _EGPCEENSC_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1098937988281 3 323.109242 966.305896 NaN NaN NaN NaN NaN NaN NaN 179.39 1 174.53 174.03 175.03 -4.868 0 0 0 0.23508 1 35732 35732 0.26902 0.26902 1 + 11965 15218 7539 7542 12238 12238 -0.17860434912711298 EGPCEENSC 9 Unmodified _EGPCEENSC_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.10955810546875 3 323.109242 966.305896 NaN NaN NaN NaN NaN NaN NaN 179.71 1 174.84 174.34 175.34 -4.868 0 0 0 0.23508 1 35813 35813 0.26902 0.26902 1 + 11966 15218 7539 7542 12239 12239 -0.17860434912711298 EGPDEALLH 9 Unmodified _EGPDEALLH_ 0 0 0 REV__ENST00000600128.5_1_19:8191443-8191676:-|nuORF REV__ENST00000600128.5_1_19:8191443-8191676:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27313232421875 2 490.737814 979.461075 0.041839 2.0532E-05 -0.72644 -0.00035649 -0.6846 -0.00033596 490.738001847686 47.575 1.2668 44.706 44.357 45.623 -2.869 73 35 3 0 0 0 0.65155 1 9028 9028 10.824 6.4947 1 6526800 + 11967 23408 7540 7543 12240 12240 -0.02947699724472841 EGPEGLKLI 9 Unmodified _EGPEGLKLI_ 0 0 0 ENSG00000152642|ENST00000282541|GPD1L ENSG00000152642|ENST00000282541|GPD1L ENSG00000152642|ENST00000282541|GPD1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7237854003906 2 478.276575 954.538597 0.27573 0.00013188 -0.20179 -9.6513E-05 0.073938 3.5363E-05 478.27640442253073 102.72 1.0476 98.403 97.906 98.954 -4.3208 89 29 4 0 0 0 0.09143 1 19741 19741 58.679 6.4105 1 32853000 11968 4935 7541 7544 12241 12241 0.0595093821170849 EGPHPLNR 8 Unmodified _EGPHPLNR_ 0 0 0 REV__ENST00000473462.5_1_13:113834236-113834296:-|nuORF REV__ENST00000473462.5_1_13:113834236-113834296:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.240234375 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 39.429 1 39.429 38.929 39.929 0 0 0 0 0.23025 1 7320 7320 0.25148 0 1 + 11969 22072 7542 7545 12242 12242 0.004668632977086418 EGPYLHGAA 9 Unmodified _EGPYLHGAA_ 0 0 0 REV__INSR|p.G1342Afs*23|1|0.12|ENSG00000171105|chr19:7117180-7117180|C/-|frameshift_variant REV__INSR|p.G1342Afs*23|1|0.12|ENSG00000171105|chr19:7117180-7117180|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.223388671875 2 457.721967 913.429381 0.69526 0.00031824 -0.47733 -0.00021848 0.21793 9.9753E-05 457.72171361155773 23.335 0.39792 21.781 21.578 21.976 -1.5532 24 10 3 0 0 0 0.60805 1 4054 4054 12.532 1.7076 1 3774900 + 11970 18199 7543 7546 12243 12243 -0.03079647687764009 EGQAFQKTA 9 Unmodified _EGQAFQKTA_ 0 0 0 nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B nc|ENSG00000107731|Q8IZJ1-2|UNC5B nc|ENSG00000107731|Q8IZJ1-2|UNC5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2715759277344 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 58.223 1 58.223 57.723 58.723 0 0 0 0 0.18064 1 11138 11138 26.268 5.8145 1 11971 2436 7544 7547 12244 12244 -0.013039934875791914 EGQALQTSK 9 Unmodified _EGQALQTSK_ 0 0 0 ENST00000461261.1_1_3:48453511-48454330:-|nuORF ENST00000461261.1_1_3:48453511-48454330:-|nuORF ENST00000461261.1_1_3:48453511-48454330:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24737548828125 2 481.251089 960.487624 0.08258 3.9742E-05 -0.81517 -0.0003923 -0.73259 -0.00035256 481.2505084892255 37.909 2.4506 37.909 36.887 39.338 0 134 69 4 0 0 0 0.19983 1 7288 7288 2.8827 1.8175 1 99259000 11972 10067 7545 7548 12245 12245 0.005799891668630153 EGQALQTSK 9 Unmodified _EGQALQTSK_ 0 0 0 ENST00000461261.1_1_3:48453511-48454330:-|nuORF ENST00000461261.1_1_3:48453511-48454330:-|nuORF ENST00000461261.1_1_3:48453511-48454330:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24774169921875 2 481.251089 960.487624 -0.20207 -9.7244E-05 -1.0036 -0.00048299 -1.2057 -0.00058023 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 0.30056 1 7814 7814 0.87518 0.49559 1 85144000 11973 10067 7545 7548 12246 12246 0.005799891668630153 EGQALQTSK 9 Unmodified _EGQALQTSK_ 0 0 0 ENST00000461261.1_1_3:48453511-48454330:-|nuORF ENST00000461261.1_1_3:48453511-48454330:-|nuORF ENST00000461261.1_1_3:48453511-48454330:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2481384277344 2 481.251089 960.487624 0.021637 1.0413E-05 -1.1165 -0.00053734 -1.0949 -0.00052693 481.2503997935835 40.302 3.026 37.762 36.657 39.683 -2.5398 141 85 2 0 0 0 0.19983 1 7553 7553 2.8827 1.8175 1 101380000 11974 10067 7545 7548 12247 12247 0.005799891668630153 EGQALQTSK 9 Unmodified _EGQALQTSK_ 0 0 0 ENST00000461261.1_1_3:48453511-48454330:-|nuORF ENST00000461261.1_1_3:48453511-48454330:-|nuORF ENST00000461261.1_1_3:48453511-48454330:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2489013671875 2 481.251089 960.487624 0.039845 1.9176E-05 -1.0501 -0.00050534 -1.0102 -0.00048616 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 0.48644 1 7505 7505 20.454 1.1966 1 69706000 11975 10067 7545 7548 12248 12248 0.005799891668630153 EGQDRPKIDC 10 Unmodified _EGQDRPKIDC_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7136535644531 3 387.517 1159.52917 0.21785 8.4422E-05 0.20052 7.7705E-05 0.41837 0.00016213 387.51702655255735 45.811 4.7767 45.811 43.467 48.244 0 327 136 4 0 0 0 0.69026 1 8516 8516 12.175 1.8595 1 12190000 + 11976 17221 7546 7549 12249 12249 -0.044211981361286234 EGQFATVYK 9 Unmodified _EGQFATVYK_ 0 0 0 ENST00000512687.5_1_5:68530748-68551520:+|nuORF;ENSG00000134058|ENST00000256443|CDK7 ENST00000512687.5_1_5:68530748-68551520:+|nuORF ENST00000512687.5_1_5:68530748-68551520:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2780151367188 2 521.763832 1041.51311 -0.29553 -0.0001542 1.7029 0.0008885 1.4074 0.0007343 522.2666731377655 87.414 0.49594 83.687 83.328 83.824 -3.727 23 13 3 0 0 0 0.46882 1 17034 17034 21.537 5.6898 1 2553400 11977 3825 7547 7550 12250 12250 -0.005985363107356534 EGQFYPVNL 9 Unmodified _EGQFYPVNL_ 0 0 0 nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1 nc|ENSG00000133424|O95461-2|LARGE1 nc|ENSG00000133424|O95461-2|LARGE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2839965820312 2 533.763832 1065.51311 0.51446 0.0002746 0.9229 0.00049261 1.4374 0.00076721 533.76434347188 100.95 0.74186 100.95 100.59 101.33 0 31 20 2 0 0 0 0.62921 1 19838 19838 24.021 0 1 2764600 11978 3803 7548 7551 12251 12251 -0.017025363107222802 EGQFYPVNL 9 Unmodified _EGQFYPVNL_ 0 0 0 nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1 nc|ENSG00000133424|O95461-2|LARGE1 nc|ENSG00000133424|O95461-2|LARGE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2839965820312 2 533.763832 1065.51311 0.81181 0.00043331 0.7692 0.00041057 1.581 0.00084388 533.764267050081 105.04 0.67582 100.99 100.58 101.26 -4.0543 40 18 3 0 0 0 0.47479 1 20202 20202 30.637 7.9003 1 2750600 11979 3803 7548 7551 12252 12252 -0.017025363107222802 EGQFYPVNL 9 Unmodified _EGQFYPVNL_ 0 0 0 nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1 nc|ENSG00000133424|O95461-2|LARGE1 nc|ENSG00000133424|O95461-2|LARGE1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 533.763832 1065.51311 0.46125 0.0002462 1.1796 0.00062961 1.6408 0.00087581 533.7645230553848 105.32 0.62802 100.95 100.56 101.19 -4.3764 -0.031206 5.7746E-05 NaN 30.637 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3612600 11980 3803 7548 7551 -0.017025363107222802 EGQTGRKW 8 Unmodified _EGQTGRKW_ 0 0 0 REV__DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant REV__DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.245361328125 2 481.246141 960.477728 NaN NaN NaN NaN NaN NaN NaN 100.36 1 100.36 99.858 100.86 0 0 0 0 0.22847 1 19691 19691 10.074 9.6657 1 + 11981 13645 7549 7552 12253 12253 -0.004091540478725619 EGQYTQRY 8 Unmodified _EGQYTQRY_ 0 0 0 REV__ENST00000529196.5_1_11:125488283-125488340:+|nuORF REV__ENST00000529196.5_1_11:125488283-125488340:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2819213867188 2 522.740888 1043.46722 0.27604 0.0001443 -0.51203 -0.00026766 -0.23599 -0.00012336 522.7401186547359 30.323 0.20993 28.206 28.119 28.329 -2.1167 7 5 2 0 0 0 0.99312 1 5461 5461 6.2058 4.3615 1 341770 + 11982 22736 7550 7553 12254 12254 -0.0527718149296561 EGRFTEGPS 9 Unmodified _EGRFTEGPS_ 0 0 0 REV__ENSG00000146826|ENST00000316937|TRAPPC14 REV__ENSG00000146826|ENST00000316937|TRAPPC14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.260009765625 2 490.227613 978.440674 NaN NaN NaN NaN NaN NaN NaN 28.655 1 26.659 26.159 27.159 -1.9962 0 0 0 0.19628 1 4845 4845 0.029283 0 1 + 11983 16900 7551 7554 12255 12255 -0.04940870384291429 EGRVLIHFG 9 Unmodified _EGRVLIHFG_ 0 0 0 ENST00000462143.5_1_9:116299065-116345734:+|nuORF;ENST00000492676.1_1_9:116299065-116303667:+|nuORF;ENST00000374140.6_1_9:116285268-116345734:+|nuORF;ENST00000394646.7_1_9:116285268-116353623:+|nuORF;ENST00000317613.10_1_9:116285268-116303667:+|nuORF ENST00000462143.5_1_9:116299065-116345734:+|nuORF ENST00000462143.5_1_9:116299065-116345734:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.1947021484375 3 343.194298 1026.56106 NaN NaN NaN NaN NaN NaN NaN 175.52 1 170.65 170.15 171.15 -4.8755 0 0 0 0.23508 1 34905 34905 2.4985 0 1 11984 8688 7552 7555 12256 12256 0.04884582399995452 EGRYATALY 9 Unmodified _EGRYATALY_ 0 0 0 ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO ENST00000495005.5_1_21:35281377-35288052:-|nuORF ENST00000495005.5_1_21:35281377-35288052:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.260986328125 2 522.261456 1042.50836 0.6486 0.00033874 -0.97085 -0.00050704 -0.32225 -0.0001683 522.2609599188614 79.504 0.86813 79.504 79.031 79.899 0 46 24 2 0 0 0 0.40602 1 15511 15511 25.399 0 1 6833000 11985 7857 7553 7556 12257 12257 -0.011194204534831442 EGSAVEALYR 10 Unmodified _EGSAVEALYR_ 0 0 0 REV__ENST00000397492.1_1_22:32346295-32352776:+|nuORF REV__ENST00000397492.1_1_22:32346295-32352776:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7794799804688 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 54.275 1 51.14 50.64 51.64 -3.1352 0 0 0 0.19577 1 10007 10007 29.082 5.061 1 + 11986 21306 7554 7557 12258 12258 -0.0026405277033063612 EGSGPLGPWG 10 Unmodified _EGSGPLGPWG_ 0 0 0 nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-5|USP19 nc|ENSG00000172046|O94966|USP19 nc|ENSG00000172046|O94966|USP19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7273254394531 2 478.727249 955.439946 -0.023616 -1.1305E-05 -0.92363 -0.00044216 -0.94724 -0.00045347 478.72695698739716 46.592 0.62304 43.751 43.486 44.109 -2.8409 29 17 3 0 0 0 0.70357 1 8797 8797 10.824 0.75 1 1037800 11987 12463 7555 7558 12259 12259 -0.03955665033333844 EGSGQTFL 8 Unmodified _EGSGQTFL_ 0 0 0 REV__ENST00000492709.5_1_20:30126008-30136787:+|nuORF REV__ENST00000492709.5_1_20:30126008-30136787:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.488525390625 1 838.394124 837.386848 0.31429 0.0002635 -0.11011 -9.232E-05 0.20418 0.00017118 838.393986194842 89.632 0.78496 85.772 85.406 86.191 -3.8595 33 21 2 0 0 0 0.60622 1 17585 17585 21.747 1.293 1 2345700 + 11988 14772 7556 7559 12260 12260 -0.03835042815990164 EGSGSSAVPSP 11 Unmodified _EGSGSSAVPSP_ 0 0 0 ENST00000413051.2_1_22:38146679-38150984:+|nuORF ENST00000413051.2_1_22:38146679-38150984:+|nuORF ENST00000413051.2_1_22:38146679-38150984:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 488.7236328125 2 487.724904 973.435254 0.22048 0.00010753 -0.66043 -0.00032211 -0.43996 -0.00021458 487.7245423069287 76.495 0.72095 72.772 72.481 73.202 -3.7227 49 20 3 0 0 0 0.34662 1 14470 14470 2.732 2.5251 1 12345000 11989 9589 7557 7560 12261 12261 -0.05252593966747554 EGSGSSAVPSP 11 Unmodified _EGSGSSAVPSP_ 0 0 0 ENST00000413051.2_1_22:38146679-38150984:+|nuORF ENST00000413051.2_1_22:38146679-38150984:+|nuORF ENST00000413051.2_1_22:38146679-38150984:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 487.724904 973.435254 0.089003 4.3409E-05 -0.6202 -0.00030249 -0.5312 -0.00025908 487.72454728893155 76.08 0.74303 72.665 72.332 73.075 -3.4151 -0.089868 -5.8279E-05 NaN 2.732 53 20 3 NaN NaN NaN NaN 0 NaN NaN 0 14003000 11990 9589 7557 7560 -0.05252593966747554 EGSGSSAVPSP 11 Unmodified _EGSGSSAVPSP_ 0 0 0 ENST00000413051.2_1_22:38146679-38150984:+|nuORF ENST00000413051.2_1_22:38146679-38150984:+|nuORF ENST00000413051.2_1_22:38146679-38150984:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 487.724904 973.435254 -0.07904 -3.855E-05 -0.42982 -0.00020963 -0.50886 -0.00024818 487.7247155618878 76.515 0.77023 72.882 72.409 73.179 -3.6337 0.12634 0.00012743 NaN 2.732 54 21 3 NaN NaN NaN NaN 0 NaN NaN 0 7364800 11991 9589 7557 7560 -0.05252593966747554 EGSRTVAEL 9 Unmodified _EGSRTVAEL_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2476501464844 2 481.251089 960.487624 0.021637 1.0413E-05 -1.1165 -0.00053734 -1.0949 -0.00052693 481.2503997935835 40.302 3.026 37.762 36.657 39.683 -2.5398 141 85 2 0 0 0 0.25976 1 7048 7048 17.113 14.482 1 101380000 11992 5009 7558 7561 12262 12262 0.005799891668516466 EGSSLKKKC 9 Unmodified _EGSSLKKKC_ 0 0 0 TCEB3|p.N465Kfs*2|1|0.27|ENSG00000011007|chr1:23751913-23751914|-/A|frameshift_variant;TCEB3|p.N587Tfs*32|1|0.47|ENSG00000011007|chr1:23754240-23754240|A/-|frameshift_variant;ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA TCEB3|p.N465Kfs*2|1|0.27|ENSG00000011007|chr1:23751913-23751914|-/A|frameshift_variant TCEB3|p.N465Kfs*2|1|0.27|ENSG00000011007|chr1:23751913-23751914|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2648620605469 2 490.265684 978.516816 NaN NaN NaN NaN NaN NaN NaN 61.799 1 58.56 58.06 59.06 -3.2395 0 0 0 0.19638 1 11574 11574 0.37959 0.3156 1 11993 1067 7559 7562 12263 12263 0.026698101914803374 EGSSPGHSAS 10 Unmodified _EGSSPGHSAS_ 0 0 0 ENST00000605952.5_2_7:150710035-150710410:-|nuORF ENST00000605952.5_2_7:150710035-150710410:-|nuORF ENST00000605952.5_2_7:150710035-150710410:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384033203125 2 458.193771 914.372988 NaN NaN NaN NaN NaN NaN NaN 76.182 1 72.548 72.048 73.048 -3.6337 0 0 0 0.22559 1 14500 14500 17.113 3.605 1 11994 11741 7560 7563 12264 12264 -0.08762320315088346 EGSWFHRKRF 10 Unmodified _EGSWFHRKRF_ 0 0 0 nc|ENSG00000186038|A5X5Y0-2|HTR3E;ENSG00000186038|ENST00000415389|HTR3E nc|ENSG00000186038|A5X5Y0-2|HTR3E nc|ENSG00000186038|A5X5Y0-2|HTR3E MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 450.21282958984375 3 450.566906 1348.67889 -0.090117 -4.0604E-05 -0.82442 -0.00037146 -0.91454 -0.00041206 450.566510677839 65.756 0.58504 65.756 65.448 66.033 0 45 16 4 0 0 0 0.76269 1 12652 12652 1.7423 0.41263 1 14086000 11995 7029 7561 7564 12265 12265 0.018495349886279655 EGSWFHRKRF 10 Unmodified _EGSWFHRKRF_ 0 0 0 nc|ENSG00000186038|A5X5Y0-2|HTR3E;ENSG00000186038|ENST00000415389|HTR3E nc|ENSG00000186038|A5X5Y0-2|HTR3E nc|ENSG00000186038|A5X5Y0-2|HTR3E MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 450.566906 1348.67889 -0.18433 -8.3052E-05 -0.84237 -0.00037954 -1.0267 -0.00046259 450.5664594735063 68.939 0.70641 65.759 65.447 66.153 -3.1796 -0.00080062 0.00027113 NaN 1.7423 58 19 4 NaN NaN NaN NaN 0 NaN NaN 0 19628000 11996 7029 7561 7564 0.018495349886279655 EGSWFHRKRF 10 Unmodified _EGSWFHRKRF_ 0 0 0 nc|ENSG00000186038|A5X5Y0-2|HTR3E;ENSG00000186038|ENST00000415389|HTR3E nc|ENSG00000186038|A5X5Y0-2|HTR3E nc|ENSG00000186038|A5X5Y0-2|HTR3E MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 450.566906 1348.67889 0.30967 0.00013953 -1.2527 -0.00056441 -0.943 -0.00042488 450.5663244788091 69.322 0.78696 65.785 65.433 66.22 -3.5362 0.025262 -0.00028348 NaN 1.7423 64 21 4 NaN NaN NaN NaN 0 NaN NaN 0 16676000 11997 7029 7561 7564 0.018495349886279655 EGSWFHRKRF 10 Unmodified _EGSWFHRKRF_ 0 0 0 nc|ENSG00000186038|A5X5Y0-2|HTR3E;ENSG00000186038|ENST00000415389|HTR3E nc|ENSG00000186038|A5X5Y0-2|HTR3E nc|ENSG00000186038|A5X5Y0-2|HTR3E MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 450.566906 1348.67889 0.27094 0.00012208 -1.244 -0.00056051 -0.97306 -0.00043843 450.566337651295 69.13 1.0167 65.74 65.419 66.436 -3.3903 -0.020062 -0.00027177 NaN 1.7423 71 28 4 NaN NaN NaN NaN 0 NaN NaN 0 15651000 11998 7029 7561 7564 0.018495349886279655 EGTARWLE 8 Unmodified _EGTARWLE_ 0 0 0 REV__ENST00000462086.1_1_X:153207964-153209081:-|nuORF REV__ENST00000462086.1_1_X:153207964-153209081:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2410888671875 2 481.240524 960.466495 1.0728 0.00051626 -0.68871 -0.00033143 0.38405 0.00018482 481.240325930732 24.797 0.2737 23.149 22.926 23.199 -1.6482 13 7 2 0 0 0 8448 1 4339 4339 6.2058 6.0829 1 649610 + 11999 14815 7562 7565 12266 12266 -0.015319761420187206 EGTHIIQHLLL 11 Unmodified _EGTHIIQHLLL_ 0 0 0 REV__ENSG00000183309|ENST00000526926|ZNF623 REV__ENSG00000183309|ENST00000526926|ZNF623 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2457275390625 3 425.24695 1272.71902 NaN NaN NaN NaN NaN NaN NaN 86.292 1 86.292 85.792 86.792 0 0 0 0 0.22632 1 16842 16842 0.03141 0 1 + 12000 18828 7563 7566 12267 12267 0.09357036868573232 EGTHIIQHLLL 11 Unmodified _EGTHIIQHLLL_ 0 0 0 REV__ENSG00000183309|ENST00000526926|ZNF623 REV__ENSG00000183309|ENST00000526926|ZNF623 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2453918457031 3 425.24695 1272.71902 NaN NaN NaN NaN NaN NaN NaN 90.03 1 85.986 85.486 86.486 -4.0443 0 0 0 0.22632 1 17150 17150 0.00056442 0 1 + 12001 18828 7563 7566 12268 12268 0.09357036868573232 EGTHIIQHLLL 11 Unmodified _EGTHIIQHLLL_ 0 0 0 REV__ENSG00000183309|ENST00000526926|ZNF623 REV__ENSG00000183309|ENST00000526926|ZNF623 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2447814941406 3 425.24695 1272.71902 NaN NaN NaN NaN NaN NaN NaN 90.286 1 86.508 86.008 87.008 -3.7779 0 0 0 0.22632 1 17277 17277 0.0059557 0 1 + 12002 18828 7563 7566 12269 12269 0.09357036868573232 EGTLKNIF 8 Unmodified _EGTLKNIF_ 0 0 0 REV__ENSG00000139131|ENST00000324868|YARS2 REV__ENSG00000139131|ENST00000324868|YARS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5311584472656 2 461.255643 920.496732 NaN NaN NaN NaN NaN NaN NaN 96.379 1 96.379 95.879 96.879 0 0 0 0 0.21323 1 18883 18883 14.582 0 1 + 12003 16501 7564 7567 12270 12270 0.03330382523188291 EGTPAVSQAP 10 Unmodified _EGTPAVSQAP_ 0 0 0 ENSG00000091844|ENST00000206262|RGS17 ENSG00000091844|ENST00000206262|RGS17 ENSG00000091844|ENST00000206262|RGS17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7386169433594 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 124.12 1 124.12 123.62 124.62 0 0 0 0 0.21103 1 24470 24470 26.268 3.5319 1 12004 1817 7565 7568 12271 12271 -0.018436997244748454 EGTPAVSQAP 10 Unmodified _EGTPAVSQAP_ 0 0 0 ENSG00000091844|ENST00000206262|RGS17 ENSG00000091844|ENST00000206262|RGS17 ENSG00000091844|ENST00000206262|RGS17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73846435546875 2 478.737814 955.461075 0.051633 2.4719E-05 1.6501 0.00078995 1.7017 0.00081467 478.738578329826 128.9 0.6694 124.27 123.76 124.43 -4.6292 28 18 2 0 0 0 0.4708 1 25381 25381 26.268 0.86883 1 1673500 12005 1817 7565 7568 12272 12272 -0.018436997244748454 EGTYVCIAT 9 Unmodified _EGTYVCIAT_ 0 0 0 nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3;ENST00000561483.5_1_15:84323016-84694242:+|nuORF nc|ENSG00000156218|P82987-2|ADAMTSL3 nc|ENSG00000156218|P82987-2|ADAMTSL3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72344970703125 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 100.78 1 100.78 100.28 101.28 0 0 0 0 0.16428 1 19773 19773 28.487 5.3384 1 12006 5080 7566 7569 12273 12273 -0.04741560345121343 EGVFSQLHY 9 Unmodified _EGVFSQLHY_ 0 0 0 nc|ENSG00000138650|Q9P2E7-2|PCDH10;ENSG00000138650|ENST00000264360|PCDH10;PCDH10|p.S121Lfs*7|1|0.23|ENSG00000138650|chr4:133150494-133150494|C/-|frameshift_variant;PCDH10|p.Q227Sfs*43|2|0.35|ENSG00000138650|chr4:133150813-133150813|C/-|frameshift_variant;PCDH10|p.L421Wfs*11|1|0.33|ENSG00000138650|chr4:133151396-133151396|C/-|frameshift_variant;PCDH10|p.Q552Rfs*13|1|0.45|ENSG00000138650|chr4:133151790-133151790|C/-|frameshift_variant nc|ENSG00000138650|Q9P2E7-2|PCDH10 nc|ENSG00000138650|Q9P2E7-2|PCDH10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2705688476562 2 540.261456 1078.50836 0.59187 0.00031976 -1.3342 -0.00072084 -0.74237 -0.00040107 540.2608731065461 122.94 0.96713 118.21 117.57 118.54 -4.731 59 27 3 0 0 0 0.59384 1 23560 23560 13.508 0 1 8434800 12007 4194 7567 7570 12274 12274 -0.027754204534630844 EGVILLKGGA 10 Unmodified _EGVILLKGGA_ 0 0 0 REV__ENSG00000103569|ENST00000219919|AQP9 REV__ENSG00000103569|ENST00000219919|AQP9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73760986328125 2 478.792392 955.570232 0.054036 2.5872E-05 -0.034072 -1.6314E-05 0.019964 9.5585E-06 478.79228711635756 96.363 0.57935 92.313 91.925 92.505 -4.0496 27 16 2 0 0 0 0.37059 2 18900 18883;18900 32.786 3.7041 1 1870300 + 12008 14894 7568 7571 12275;12276 12276 0.09066930965661868 EGVSGRYF 8 Unmodified _EGVSGRYF_ 0 0 0 ENST00000468071.1_1_2:18736459-18741913:-|nuORF;ENSG00000240857|ENST00000381249|RDH14 ENST00000468071.1_1_2:18736459-18741913:-|nuORF ENST00000468071.1_1_2:18736459-18741913:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2239685058594 2 457.721967 913.429381 0.26568 0.00012161 0.28653 0.00013115 0.55222 0.00025276 457.7219793661411 21.803 0.34284 21.803 21.602 21.945 0 25 9 3 0 0 0 0.58432 1 3684 3684 23.148 3.7094 1 3896200 12009 7848 7569 7572 12277 12277 -0.030796476877753776 EGVSGRYF 8 Unmodified _EGVSGRYF_ 0 0 0 ENST00000468071.1_1_2:18736459-18741913:-|nuORF;ENSG00000240857|ENST00000381249|RDH14 ENST00000468071.1_1_2:18736459-18741913:-|nuORF ENST00000468071.1_1_2:18736459-18741913:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2234191894531 2 457.721967 913.429381 -0.1183 -5.4148E-05 0.37749 0.00017279 0.25919 0.00011864 457.72207841301605 23.213 0.34722 21.76 21.578 21.925 -1.4535 23 9 3 0 0 0 0.68128 1 3768 3768 16.942 1.0951 1 4177700 12010 7848 7569 7572 12278 12278 -0.030796476877753776 EGVVPNRFY 9 Unmodified _EGVVPNRFY_ 0 0 0 nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;SORCS1|p.D514Tfs*16|1|0.33|ENSG00000108018|chr10:106688212-106688212|C/-|frameshift_variant;SORCS1|p.L800Cfs*3|1|0.12|ENSG00000108018|chr10:106652460-106652460|C/-|frameshift_variant nc|ENSG00000108018|Q8WY21-4|SORCS1 nc|ENSG00000108018|Q8WY21-4|SORCS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2698364257812 2 540.777274 1079.53999 -0.1847 -9.988E-05 1.6973 0.00091788 1.5126 0.000818 541.2797446415681 110.12 1.4585 105.74 104.92 106.38 -4.3776 109 41 4 0 0 0 0.17664 1 21563 21563 7.4771 1.2852 1 5102700 12011 2453 7570 7573 12279 12279 0.003405723004561878 EGWTFFHAYYY 11 Unmodified _EGWTFFHAYYY_ 0 0 0 ENSG00000124249|ENST00000372861|KCNK15 ENSG00000124249|ENST00000372861|KCNK15 ENSG00000124249|ENST00000372861|KCNK15 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3680419921875 2 742.319502 1482.62445 NaN NaN NaN NaN NaN NaN NaN 94.523 1 90.332 89.832 90.832 -4.1911 0 0 0 0.23698 1 18031 18031 1.4819 0 1 12012 3307 7571 7574 12280 12280 -0.09755521673400835 EGYEAEYRA 9 Unmodified _EGYEAEYRA_ 0 0 0 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7919921875 2 544.238178 1086.4618 NaN NaN NaN NaN NaN NaN NaN 65.842 1 62.384 61.884 62.884 -3.4581 0 0 0 0.21078 1 12330 12330 20.415 2.2682 1 + 12013 19157 7572 7575 12281 12281 -0.07796905075429095 EGYKDLAA 8 Unmodified _EGYKDLAA_ 0 0 0 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 433.8889465332031 2 433.71635 865.418148 0.19304 8.3726E-05 -0.25713 -0.00011152 -0.064082 -2.7793E-05 433.7161530245412 33.27 0.52802 31.123 30.865 31.393 -2.1468 34 14 3 0 0 0 1.0147 1 5754 5754 9.3474 0.75416 1 2575800 12014 179 7573 7576 12282 12282 -0.019944697819141766 EGYKDLAA 8 Unmodified _EGYKDLAA_ 0 0 0 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 433.71635 865.418148 0.16825 7.2975E-05 -0.23168 -0.00010048 -0.063421 -2.7507E-05 433.7161565905956 31.151 0.52598 31.151 30.896 31.421 0 0.028194 -5.5409E-05 NaN 9.3474 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4052200 12015 179 7573 7576 -0.019944697819141766 EGYKDLAA 8 Unmodified _EGYKDLAA_ 0 0 0 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 433.71635 865.418148 -0.12761 -5.5345E-05 0.026208 1.1367E-05 -0.1014 -4.3978E-05 433.7162729353934 33.377 0.52472 31.059 30.833 31.358 -2.3175 -0.063853 0.00016829 NaN 9.3474 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2341200 12016 179 7573 7576 -0.019944697819141766 EGYKDLAA 8 Unmodified _EGYKDLAA_ 0 0 0 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 433.71635 865.418148 0.20818 9.0293E-05 -0.22261 -9.6548E-05 -0.014423 -6.2554E-06 433.71613203196466 33.374 0.51292 31.158 30.84 31.353 -2.2158 0.035157 -4.7543E-05 NaN 9.3474 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2218100 12017 179 7573 7576 -0.019944697819141766 EGYLKGHYV 9 Unmodified _EGYLKGHYV_ 0 0 0 ENSG00000161647|ENST00000398389|MPP3 ENSG00000161647|ENST00000398389|MPP3 ENSG00000161647|ENST00000398389|MPP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.268798828125 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 15.709 1 14.487 13.987 14.987 -1.2219 0 0 0 0.19632 1 2220 2220 0.40827 0 1 12018 5294 7574 7577 12283 12283 -0.0005883007381726202 EHACQLMF 8 Unmodified _EHACQLMF_ 0 0 0 nc|ENSG00000157181|Q5SWX8-4|ODR4 nc|ENSG00000157181|Q5SWX8-4|ODR4 nc|ENSG00000157181|Q5SWX8-4|ODR4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2650146484375 2 489.71223 977.409908 0.1752 8.58E-05 -1.1417 -0.00055908 -0.96645 -0.00047328 489.71173593196886 114.2 0.9559 114.2 113.69 114.65 0 35 26 2 0 0 0 0.95284 1 22387 22387 5.2307 0.47466 1 2157900 12019 12396 7575 7578 12284 12284 -0.07970063294533247 EHACQLMF 8 Unmodified _EHACQLMF_ 0 0 0 nc|ENSG00000157181|Q5SWX8-4|ODR4 nc|ENSG00000157181|Q5SWX8-4|ODR4 nc|ENSG00000157181|Q5SWX8-4|ODR4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.71223 977.409908 0.38424 0.00018817 -1.0653 -0.00052167 -0.68102 -0.00033351 489.71168056412785 118.74 0.87661 114.24 113.8 114.68 -4.502 0.038267 -4.2946E-05 NaN 5.2307 40 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2348800 12020 12396 7575 7578 -0.07970063294533247 EHACQLMF 8 Unmodified _EHACQLMF_ 0 0 0 nc|ENSG00000157181|Q5SWX8-4|ODR4 nc|ENSG00000157181|Q5SWX8-4|ODR4 nc|ENSG00000157181|Q5SWX8-4|ODR4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.71223 977.409908 0.17297 8.4706E-05 -0.74382 -0.00036426 -0.57085 -0.00027955 489.7117286964222 118.7 0.98961 114.29 113.71 114.7 -4.4088 0.098055 0.00027188 NaN 5.2307 39 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1496200 12021 12396 7575 7578 -0.07970063294533247 EHALLEKNG 9 Unmodified _EHALLEKNG_ 0 0 0 REV__ENST00000587860.1_1_18:46287547-46385927:+|nuORF REV__ENST00000587860.1_1_18:46287547-46385927:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.0401916503906 3 337.513696 1009.51926 -0.47572 -0.00016056 0.61138 0.00020635 0.13566 4.5786E-05 337.5138804518 16.55 1.0023 16.55 15.849 16.851 0 54 28 2 0 0 0 0.8825 1 2542 2542 2.7352 0 1 1719100 + 12022 23280 7576 7579 12285 12285 0.014879819208090339 EHAPCYCR 8 Unmodified _EHAPCYCR_ 0 0 0 REV__ENST00000572326.1_1_17:4876509-4881847:-|nuORF REV__ENST00000572326.1_1_17:4876509-4881847:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2673645019531 2 489.699654 977.384756 0.19593 9.5947E-05 0.097207 4.7602E-05 0.29314 0.00014355 489.6998475688987 117.79 0.36188 113.38 113.28 113.64 -4.4088 14 9 2 0 0 0 0.98792 1 22685 22685 5.2307 3.1709 1 882540 + 12023 13250 7577 7580 12286 12286 -0.10484118097110695 EHAQFLFA 8 Unmodified _EHAQFLFA_ 0 0 0 REV__ENSG00000136451|ENST00000581208|VEZF1 REV__ENSG00000136451|ENST00000581208|VEZF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23712158203125 2 481.74016 961.465767 0.25525 0.00012297 -1.1904 -0.00057347 -0.93517 -0.00045051 481.73972933102317 27.582 0.24479 25.827 25.685 25.93 -1.7552 10 6 2 0 0 0 0.95284 1 4626 4626 9.3474 7.8655 1 623450 + 12024 16331 7578 7581 12287 12287 -0.01650770791047762 EHATMFLI 8 Unmodified _EHATMFLI_ 0 0 0 nc|ENSG00000184156|O43525-2|KCNQ3 nc|ENSG00000184156|O43525-2|KCNQ3 nc|ENSG00000184156|O43525-2|KCNQ3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2455749511719 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 27.782 1 25.786 25.286 26.286 -1.9962 0 0 0 0.21452 1 4659 4659 13.508 4.1604 1 12025 12509 7579 7582 12288 12288 -0.007929598659416115 EHDAKRQY 8 Unmodified _EHDAKRQY_ 0 0 0 REV__ROCK2|p.S684Afs*5|1|0.34|ENSG00000134318|chr2:11211834-11211834|T/-|frameshift_variant REV__ROCK2|p.S684Afs*5|1|0.34|ENSG00000134318|chr2:11211834-11211834|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6962280273438 2 523.75433 1045.49411 0.20322 0.00010644 -0.58281 -0.00030525 -0.37959 -0.00019881 523.7535437787132 23.147 0.41091 23.147 22.927 23.338 0 21 11 3 0 0 0 0.27274 1 3893 3893 38.151 11.268 1 1655100 + 12026 16204 7580 7583 12289 12289 -0.026820728817710915 EHDCFCYY 8 Unmodified _EHDCFCYY_ 0 0 0 REV__tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1 REV__tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015075683594 3 360.458094 1078.35245 -0.047829 -1.724E-05 0.73215 0.00026391 0.68432 0.00024667 360.4597323028258 50.228 0.16971 50.228 50.13 50.3 0 6 4 2 0 0 0 1.0271 1 9504 9504 1.6526 0 1 395060 + 12027 25315 7581 7584 12290 12290 -0.18358950290758003 EHDHVLPLQ 9 Unmodified _EHDHVLPLQ_ 0 0 0 ENST00000558890.5_1_15:99872165-99903471:+|nuORF;nc|ENSG00000168904|Q86X40-3|LRRC28;nc|ENSG00000168904|Q86X40-2|LRRC28;ENSG00000168904|ENST00000301981|LRRC28 ENST00000558890.5_1_15:99872165-99903471:+|nuORF ENST00000558890.5_1_15:99872165-99903471:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7752685546875 2 544.28018 1086.54581 0.26698 0.00014531 0.18659 0.00010156 0.45357 0.00024687 544.280195479876 61.321 0.72967 58.081 57.718 58.448 -3.2395 56 20 4 0 0 0 0.79204 1 11427 11427 7.2892 0 1 8838500 12028 5947 7582 7585 12291 12291 0.005996708121301708 EHDIRVSLR 9 Unmodified _EHDIRVSLR_ 0 0 0 VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant;nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.22186279296875 3 375.543878 1123.60981 NaN NaN NaN NaN NaN NaN NaN 35.81 1 33.417 32.917 33.917 -2.3938 0 0 0 0.23508 1 6601 6601 7.1017 0.47135 1 12029 1231 7583 7586 12292 12292 0.052944509690860286 EHDPVLKQI 9 Unmodified _EHDPVLKQI_ 0 0 0 ENSG00000135999|ENST00000258484|EPC2 ENSG00000135999|ENST00000258484|EPC2 ENSG00000135999|ENST00000258484|EPC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20086669921875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 46.591 1 43.725 43.225 44.225 -2.8653 0 0 0 0.23508 1 8474 8474 4.897 0 1 12030 3974 7584 7587 12293 12293 0.046171279889904326 EHEALSIY 8 Unmodified _EHEALSIY_ 0 0 0 REV__nc|ENSG00000137831|Q9BZF9-2|UACA REV__nc|ENSG00000137831|Q9BZF9-2|UACA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2373046875 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 25.932 1 25.932 25.432 26.432 0 0 0 0 0.22636 1 4522 4522 4.2837 0 1 + 12031 16417 7585 7588 12294 12294 -0.02654798236130773 EHEGPALY 8 Unmodified _EHEGPALY_ 0 0 0 ENSG00000126067|ENST00000373237|PSMB2 ENSG00000126067|ENST00000373237|PSMB2 ENSG00000126067|ENST00000373237|PSMB2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2383117675781 2 458.213975 914.413397 NaN NaN NaN NaN NaN NaN NaN 49.897 1 49.897 49.397 50.397 0 0 0 0 0.20896 1 9438 9438 18.135 5.6034 1 12032 3414 7586 7589 12295 12295 -0.04723353924680396 EHETLLLR 8 Unmodified _EHETLLLR_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;TLN1|p.S405Afs*84|1|0.3|ENSG00000137076|chr9:35720503-35720503|T/-|frameshift_variant;ENST00000378192.2_1_9:35723947-35725691:-|nuORF ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.0494079589844 3 337.525825 1009.55564 -0.39817 -0.00013439 0.69218 0.00023363 0.29401 9.9237E-05 337.5259970111607 21.514 0.30488 21.514 21.33 21.635 0 13 8 3 0 0 0 1.0277 1 3587 3587 1.6526 0 1 564720 12033 4065 7587 7590 12296 12296 0.05124858817544009 EHETLLLR 8 Unmodified _EHETLLLR_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;TLN1|p.S405Afs*84|1|0.3|ENSG00000137076|chr9:35720503-35720503|T/-|frameshift_variant;ENST00000378192.2_1_9:35723947-35725691:-|nuORF ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 337.525825 1009.55564 0.51352 0.00017333 -0.50877 -0.00017172 0.0047522 1.604E-06 337.5255804045231 23.314 0.18095 21.761 21.653 21.834 -1.5532 0.1237 -0.00053738 NaN 1.6526 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 318990 12034 4065 7587 7590 0.05124858817544009 EHEVTDHVL 9 Unmodified _EHEVTDHVL_ 0 0 0 REV__ENSG00000167858|ENST00000338694|TEKT1 REV__ENSG00000167858|ENST00000338694|TEKT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2011413574219 3 360.176972 1077.50909 NaN NaN NaN NaN NaN NaN NaN 53.813 1 53.813 53.313 54.313 0 0 0 0 0.23508 1 10253 10253 2.7352 1.0826 1 + 12035 17973 7588 7591 12297 12297 -0.02656625804434043 EHEYNTRF 8 Unmodified _EHEYNTRF_ 0 0 0 REV__ENST00000414673.5_1_17:16734454-16736059:-|nuORF REV__ENST00000414673.5_1_17:16734454-16736059:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.767822265625 2 548.246338 1094.47812 -0.020699 -1.1348E-05 0.19102 0.00010473 0.17032 9.3379E-05 548.2472766513373 46.775 0.48369 43.908 43.753 44.237 -2.8665 16 13 2 0 0 0 0.99494 1 8582 8582 4.756 0 1 1736200 + 12036 21447 7589 7592 12298 12298 -0.065337791186721 EHFHCDEK 8 Unmodified _EHFHCDEK_ 0 0 0 ENST00000369102.5_2_1:150241212-150245204:+|nuORF ENST00000369102.5_2_1:150241212-150245204:+|nuORF ENST00000369102.5_2_1:150241212-150245204:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2630615234375 2 522.713816 1043.41308 -0.11052 -5.7772E-05 -3.1843 -0.0016645 -3.2949 -0.0017223 522.7117190476262 80.199 0.45129 76.523 76.387 76.839 -3.676 15 12 2 0 0 0 0.98792 1 15325 15325 9.3474 1.4373 1 1401600 12037 9110 7590 7593 12299 12299 -0.10689096916166818 EHGEGEAPP 9 Unmodified _EHGEGEAPP_ 0 0 0 REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5389404296875 2 461.698689 921.382825 NaN NaN NaN NaN NaN NaN NaN 43.112 1 43.112 42.612 43.612 0 0 0 0 0.23508 1 8074 8074 7.9102 1.7044 1 + 12038 15103 7591 7594 12300 12300 -0.0810113230971865 EHGRASSVL 9 Unmodified _EHGRASSVL_ 0 0 0 nc|ENSG00000135622|O95754-2|SEMA4F;ENSG00000135622|ENST00000357877|SEMA4F nc|ENSG00000135622|O95754-2|SEMA4F nc|ENSG00000135622|O95754-2|SEMA4F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7423095703125 2 478.251423 954.488293 -1.1111 -0.00053138 0.54126 0.00025886 -0.56984 -0.00027253 478.25178028851326 18.751 0.20928 17.116 16.971 17.18 -1.6351 8 5 2 0 0 0 0.80521 1 2773 2773 10.824 1.4765 1 239810 12039 3939 7592 7595 12301 12301 0.00922828606553594 EHGSDNDGES 10 Unmodified _EHGSDNDGES_ 0 0 0 REV__nc|ENSG00000181191|Q8NG27-2|PJA1 REV__nc|ENSG00000181191|Q8NG27-2|PJA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.685546875 2 523.686507 1045.35846 -0.39407 -0.00020637 -1.2572 -0.00065837 -1.6512 -0.00086474 523.6856801033421 53.242 0.70179 50.358 49.999 50.701 -2.8837 29 19 2 0 0 0 0.75133 1 10152 10152 5.2969 0.96765 1 1047400 + 12040 18721 7593 7596 12302 12302 -0.16240437253895834 EHHTPGPV 8 Unmodified _EHHTPGPV_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|65|2|sense L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|65|2|sense L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|65|2|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.216796875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 93.004 1 88.861 88.361 89.361 -4.1435 0 0 0 0.21323 1 17724 17724 14.582 1.0738 1 12041 12053 7594 7597 12303 12303 -0.027245144849530334 EHHWRNFD 8 Unmodified _EHHWRNFD_ 0 0 0 REV__nc|ENSG00000198589|P50851-2|LRBA REV__nc|ENSG00000198589|P50851-2|LRBA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2116394042969 3 380.837173 1139.48969 NaN NaN NaN NaN NaN NaN NaN 14.42 1 14.42 13.92 14.92 0 0 0 0 0.23584 1 2147 2147 0.0082765 0 1 + 12042 19425 7595 7598 12304 12304 -0.07447537304688012 EHIAAELH 8 Unmodified _EHIAAELH_ 0 0 0 REV__nc|ENSG00000204406|Q9P267|MBD5 REV__nc|ENSG00000204406|Q9P267|MBD5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23553466796875 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 22.289 1 20.5 20 21 -1.7886 0 0 0 0.23025 1 3532 3532 0.68139 0.054566 1 + 12043 19532 7596 7599 12305 12305 -0.006559587964375169 EHIEVVRRPRK 11 Unmodified _EHIEVVRRPRK_ 0 0 0 nc|ENSG00000171790|Q499Z3-4|SLFNL1;SLFNL1|p.L318Sfs*3|1|0.08|ENSG00000171790|chr1:41017640-41017640|G/-|frameshift_variant;nc|ENSG00000171790|Q499Z3-2|SLFNL1;nc|ENSG00000171790|Q499Z3-3|SLFNL1;ENSG00000171790|ENST00000302946|SLFNL1 nc|ENSG00000171790|Q499Z3-4|SLFNL1 nc|ENSG00000171790|Q499Z3-4|SLFNL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 709.9220581054688 2 709.920584 1417.82661 NaN NaN NaN NaN NaN NaN NaN 167.24 1 167.24 166.74 167.74 0 0 0 0 0.22632 1 34162 34162 0.0059557 0 1 12044 6168 7597 7600 12306 12306 0.13441426522626898 EHIGDVNELPW 11 Unmodified _EHIGDVNELPW_ 0 0 0 REV__ENST00000541937.2_1_12:131451015-131457650:+|nuORF REV__ENST00000541937.2_1_12:131451015-131457650:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21484375 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 116.92 1 112.43 111.93 112.93 -4.486 0 0 0 0.23698 1 23048 23048 2.6312 0 1 + 12045 15247 7598 7601 12307 12307 -0.026887096788186682 EHIGDVNELPW 11 Unmodified _EHIGDVNELPW_ 0 0 0 REV__ENST00000541937.2_1_12:131451015-131457650:+|nuORF REV__ENST00000541937.2_1_12:131451015-131457650:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2164611816406 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 114.52 1 110.2 109.7 110.7 -4.3136 0 0 0 0.23698 1 22054 22054 2.6312 0 1 + 12046 15247 7598 7601 12308 12308 -0.026887096788186682 EHIGDVNELPW 11 Unmodified _EHIGDVNELPW_ 0 0 0 REV__ENST00000541937.2_1_12:131451015-131457650:+|nuORF REV__ENST00000541937.2_1_12:131451015-131457650:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2173767089844 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 118.38 1 113.97 113.47 114.47 -4.4088 0 0 0 0.23452 1 22779 22779 4.7159 0.30977 1 + 12047 15247 7598 7601 12309 12309 -0.026887096788186682 EHIGDVNELPW 11 Unmodified _EHIGDVNELPW_ 0 0 0 REV__ENST00000541937.2_1_12:131451015-131457650:+|nuORF REV__ENST00000541937.2_1_12:131451015-131457650:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22821044921875 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 118.41 1 114 113.5 114.5 -4.4088 0 0 0 0.23452 1 22786 22786 4.7159 1.8726 1 + 12048 15247 7598 7601 12310 12310 -0.026887096788186682 EHIKNDKYL 9 Unmodified _EHIKNDKYL_ 0 0 0 nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6 nc|ENSG00000145495|O60337-6|MARCHF6 nc|ENSG00000145495|O60337-6|MARCHF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7074890136719 3 387.208384 1158.60332 0.11164 4.3228E-05 0.28358 0.0001098 0.39521 0.00015303 387.2084389608391 104.75 0.417 100.7 100.45 100.87 -4.0543 15 11 2 0 0 0 0.88054 1 20111 20111 0.86438 0.62853 1 1057200 12049 4609 7599 7602 12311 12311 0.030365130177187893 EHIKNDKYL 9 Unmodified _EHIKNDKYL_ 0 0 0 nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6 nc|ENSG00000145495|O60337-6|MARCHF6 nc|ENSG00000145495|O60337-6|MARCHF6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 387.208384 1158.60332 0.29849 0.00011558 -0.002743 -1.0621E-06 0.29574 0.00011451 387.20818551758776 100.89 0.53008 100.89 100.69 101.22 0 0.15665 -0.00048174 NaN 0.86438 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1790800 12050 4609 7599 7602 0.030365130177187893 EHIKNDKYL 9 Unmodified _EHIKNDKYL_ 0 0 0 nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6 nc|ENSG00000145495|O60337-6|MARCHF6 nc|ENSG00000145495|O60337-6|MARCHF6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 387.208384 1158.60332 -0.43738 -0.00016936 1.0141 0.00039265 0.57668 0.00022329 387.20863086104157 104.83 0.55871 100.61 100.27 100.82 -4.2183 -0.12457 0.00069939 NaN 0.86438 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1070400 12051 4609 7599 7602 0.030365130177187893 EHILDELCI 9 Unmodified _EHILDELCI_ 0 0 0 REV__ENSG00000146223|ENST00000493763|RPL7L1 REV__ENSG00000146223|ENST00000493763|RPL7L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7720336914062 2 542.7708 1083.52705 0.44209 0.00023996 -2.5441 -0.0013809 -2.102 -0.0011409 542.7689527489924 122.42 1.0278 117.88 117.28 118.3 -4.5476 60 28 3 0 0 0 0.38188 1 24121 24121 26.884 4.1474 1 6199200 + 12052 16877 7600 7603 12312 12312 -0.011376268739468287 EHILDELCI 9 Unmodified _EHILDELCI_ 0 0 0 REV__ENSG00000146223|ENST00000493763|RPL7L1 REV__ENSG00000146223|ENST00000493763|RPL7L1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.7708 1083.52705 0.32665 0.00017729 -2.6608 -0.0014442 -2.3342 -0.0012669 542.7693068588969 117.52 0.87914 117.52 117.12 118 0 -0.23256 0.00027337 NaN 26.884 53 24 3 NaN NaN NaN NaN 0 NaN NaN 0 4354600 + 12053 16877 7600 7603 -0.011376268739468287 EHILDELCI 9 Unmodified _EHILDELCI_ 0 0 0 REV__ENSG00000146223|ENST00000493763|RPL7L1 REV__ENSG00000146223|ENST00000493763|RPL7L1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.7708 1083.52705 0.44209 0.00023996 -2.5441 -0.0013809 -2.102 -0.0011409 542.7689527489924 122.42 1.0278 117.88 117.28 118.3 -4.5476 0.1251 0.00040003 NaN 26.884 60 28 3 NaN NaN NaN NaN 0 NaN NaN 0 6199200 + 12054 16877 7600 7603 -0.011376268739468287 EHILDELCI 9 Unmodified _EHILDELCI_ 0 0 0 REV__ENSG00000146223|ENST00000493763|RPL7L1 REV__ENSG00000146223|ENST00000493763|RPL7L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.7708 1083.52705 0.52735 0.00028623 -2.4492 -0.0013294 -1.9219 -0.0010431 542.7690139922739 122.53 0.99192 117.84 117.27 118.26 -4.6873 0.087383 0.00050308 NaN 26.884 43 28 2 NaN NaN NaN NaN 0 NaN NaN 0 4650000 + 12055 16877 7600 7603 -0.011376268739468287 EHILDELCI 9 Unmodified _EHILDELCI_ 0 0 0 REV__ENSG00000146223|ENST00000493763|RPL7L1 REV__ENSG00000146223|ENST00000493763|RPL7L1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.7708 1083.52705 0.39674 0.00021534 -3.2954 -0.0017886 -2.8986 -0.0015733 542.7689866780909 122.3 0.9261 117.77 117.33 118.26 -4.5305 0.020075 -0.00041547 NaN 26.884 62 25 4 NaN NaN NaN NaN 0 NaN NaN 0 5422700 + 12056 16877 7600 7603 -0.011376268739468287 EHIRRMERTLQ 11 Unmodified _EHIRRMERTLQ_ 0 0 0 REV__ENST00000268070.8_1_15:100514484-100533361:-|nuORF REV__ENST00000268070.8_1_15:100514484-100533361:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26666259765625 3 490.264898 1467.77286 NaN NaN NaN NaN NaN NaN NaN 60.836 1 60.836 60.336 61.336 0 0 0 0 0.22632 1 11670 11670 0.2986 0.29264 1 + 12057 20262 7601 7604 12313 12313 0.05768886028636189 EHISFALAR 9 Unmodified _EHISFALAR_ 0 0 0 REV__ENST00000493688.5_1_20:56813265-56820980:-|nuORF REV__ENST00000493688.5_1_20:56813265-56820980:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.16717529296875 3 348.525936 1042.55598 -0.86015 -0.00029979 0.60255 0.00021001 -0.2576 -8.978E-05 348.526164820546 80.429 1.4238 76.741 76.099 77.523 -3.6879 157 40 6 0 0 0 0.55979 1 15359 15359 10.8 4.5937 1 161640000 + 12058 22354 7602 7605 12314 12314 0.036402785373638835 EHISFALY 8 Unmodified _EHISFALY_ 0 0 0 ENSG00000273136|ENST00000620612|NBPF26;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000266338|ENST00000581897|NBPF15 ENSG00000273136|ENST00000620612|NBPF26;ENSG00000266338|ENST00000581897|NBPF15 ENSG00000266338|ENST00000581897|NBPF15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.266845703125 2 490.247818 978.481082 0.036064 1.768E-05 -1.139 -0.0005584 -1.103 -0.00054072 490.2475382138208 41.757 0.31969 39.106 38.934 39.254 -2.651 12 8 2 0 0 0 0.49844 1 7502 7502 28.173 0 1 647280 12059 8009;7983 7603 7606 12315 12315 -0.009019039938721107 EHKAISFE 8 Unmodified _EHKAISFE_ 0 0 0 nc|ENSG00000176290|Q96R72|OR4K3 nc|ENSG00000176290|Q96R72|OR4K3 nc|ENSG00000176290|Q96R72|OR4K3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7702941894531 2 480.742899 959.471246 0.34094 0.00016391 -0.43089 -0.00020715 -0.08995 -4.3243E-05 480.74263062627165 30.656 1.019 28.763 28.381 29.4 -1.8928 64 28 4 0 0 0 0.15482 1 5259 5259 52.268 6.5687 1 31589000 12060 12478 7604 7607 12316 12316 -0.010110919992371237 EHKILREAA 9 Unmodified _EHKILREAA_ 0 0 0 ENSG00000144031|ENST00000360589|ANKRD53 ENSG00000144031|ENST00000360589|ANKRD53 ENSG00000144031|ENST00000360589|ANKRD53 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.07489013671875 3 356.204974 1065.59309 0.90254 0.00032149 -0.8616 -0.00030691 0.040942 1.4584E-05 356.20465736085316 25.514 0.79853 23.866 23.407 24.205 -1.6482 34 22 2 0 0 0 0.87918 1 4528 4528 1.0715 0 1 896200 12061 4539 7605 7608 12317 12317 0.06291950083118536 EHKREYKRWHE 11 Unmodified _EHKREYKRWHE_ 0 0 0 REV__nc|ENSG00000212789|Q8NFI4|ST13P5 REV__nc|ENSG00000212789|Q8NFI4|ST13P5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2711791992188 3 533.270929 1596.79096 NaN NaN NaN NaN NaN NaN NaN 34.66 1 32.342 31.842 32.842 -2.3175 0 0 0 0.22632 1 6370 6370 1.4551 0.94916 1 + 12062 24262 7606 7609 12318 12318 0.016433442749757887 EHKREYKRWHE 11 Unmodified _EHKREYKRWHE_ 0 0 0 REV__nc|ENSG00000212789|Q8NFI4|ST13P5 REV__nc|ENSG00000212789|Q8NFI4|ST13P5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2669677734375 3 533.270929 1596.79096 NaN NaN NaN NaN NaN NaN NaN 123.98 1 119.41 118.91 119.91 -4.5757 0 0 0 0.22632 1 24445 24445 0.026206 0 1 + 12063 24262 7606 7609 12319 12319 0.016433442749757887 EHKTTKNI 8 Unmodified _EHKTTKNI_ 0 0 0 tr|U7T1K9|U7T1K9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00852PE=3SV=1 tr|U7T1K9|U7T1K9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00852PE=3SV=1 tr|U7T1K9|U7T1K9_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00852PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1802062988281 3 324.182058 969.524344 NaN NaN NaN NaN NaN NaN NaN 62.737 1 62.737 62.237 63.237 0 0 0 0 0.21486 1 12051 12051 3.9444 2.1002 1 12064 26323 7607 7610 12320 12320 0.03836285783427229 EHLFRCIYSLL 11 Unmodified _EHLFRCIYSLL_ 0 0 0 REV__ARHGAP25|p.P365Lfs*17|1|0.24|ENSG00000163219|chr2:68819209-68819209|C/-|frameshift_variant REV__ARHGAP25|p.P365Lfs*17|1|0.24|ENSG00000163219|chr2:68819209-68819209|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2487487792969 3 465.248074 1392.72239 0.73277 0.00034092 1.1643 0.0005417 1.8971 0.00088262 465.5829247751532 106 0.72044 101.91 101.64 102.36 -4.0913 28 20 2 0 0 0 0.62176 2 20405 20405;20451 0.094841 0 1 1885600 + 12065 13099 7608 7611 12321;12322 12321 0.04173963650941914 EHLGIPALLD 10 Unmodified _EHLGIPALLD_ 0 0 0 MICALL2|p.P404Qfs*93|2|0.31|ENSG00000164877|chr7:1444859-1444859|G/-|frameshift_variant;MICALL2|p.G429Afs*68|2|0.24|ENSG00000164877|chr7:1444786-1444786|G/-|frameshift_variant;MICALL2|p.P533Rfs*36|1|0.4|ENSG00000164877|chr7:1442305-1442305|G/-|frameshift_variant;nc|ENSG00000164877|Q8IY33-4|MICALL2;ENST00000472100.5_1_7:1481822-1498962:-|nuORF;nc|ENSG00000164877|Q8IY33-2|MICALL2;ENSG00000164877|ENST00000297508|MICALL2 MICALL2|p.P404Qfs*93|2|0.31|ENSG00000164877|chr7:1444859-1444859|G/-|frameshift_variant MICALL2|p.P404Qfs*93|2|0.31|ENSG00000164877|chr7:1444859-1444859|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20159912109375 3 359.86948 1076.58661 -0.31734 -0.0001142 2.6611 0.00095766 2.3438 0.00084345 360.20486854272076 19.319 0.24723 17.993 17.827 18.074 -1.3251 8 6 2 0 0 0 0.75679 1 2919 2919 3.5871 0 1 339610 12066 5571 7609 7612 12323 12323 0.05138012131760661 EHLGSDES 8 Unmodified _EHLGSDES_ 0 0 0 REV__nc|ENSG00000161647|Q13368-2|MPP3 REV__nc|ENSG00000161647|Q13368-2|MPP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2281188964844 2 437.182872 872.35119 NaN NaN NaN NaN NaN NaN NaN 46.27 1 43.403 42.903 43.903 -2.8666 0 0 0 0.21486 1 8417 8417 9.3474 0 1 + 12067 17462 7610 7613 12324 12324 -0.090091250636533 EHLKAQLEAL 10 Unmodified _EHLKAQLEAL_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;MIB1-MYO5B|1|fusion ENSG00000167306|ENST00000285039|MYO5B;MIB1-MYO5B|1|fusion MIB1-MYO5B|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.326904296875 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 106.16 1 102.07 101.57 102.57 -4.0913 0 0 0 2.8426 1 20413 20413 0.51642 0.13683 1 12068 5800;12146 7611 7614 12325 12325 0.06533086051786086 EHLLEVIPVM 10 Unmodified _EHLLEVIPVM_ 0 0 0 ENST00000552761.5_1_12:42726483-42768672:+|nuORF ENST00000552761.5_1_12:42726483-42768672:+|nuORF ENST00000552761.5_1_12:42726483-42768672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.262939453125 2 590.325742 1178.63693 NaN NaN NaN NaN NaN NaN NaN 132.95 1 128.15 127.65 128.65 -4.799 0 0 0 0.22583 1 25588 25588 13.906 4.5229 1 12069 11198 7612 7615 12326 12326 0.05475798465226944 EHLPKNDLI 9 Unmodified _EHLPKNDLI_ 0 0 0 REV__UNC5D|p.K363N|1|0.16|ENSG00000156687|chr8:35705933-35705933|A/C|missense_variant REV__UNC5D|p.K363N|1|0.16|ENSG00000156687|chr8:35705933-35705933|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 102.78 1 98.59 98.09 99.09 -4.1861 0 0 0 0.23508 1 20202 20202 7.1017 0.37856 1 + 12070 25517 7613 7616 12327 12327 0.046171279889904326 EHLPKNDLI 9 Unmodified _EHLPKNDLI_ 0 0 0 REV__UNC5D|p.K363N|1|0.16|ENSG00000156687|chr8:35705933-35705933|A/C|missense_variant REV__UNC5D|p.K363N|1|0.16|ENSG00000156687|chr8:35705933-35705933|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 91.089 1 86.994 86.494 87.494 -4.0946 0 0 0 0.23508 1 17356 17356 11.495 4.2055 1 + 12071 25517 7613 7616 12328 12328 0.046171279889904326 EHLPKNDLI 9 Unmodified _EHLPKNDLI_ 0 0 0 REV__UNC5D|p.K363N|1|0.16|ENSG00000156687|chr8:35705933-35705933|A/C|missense_variant REV__UNC5D|p.K363N|1|0.16|ENSG00000156687|chr8:35705933-35705933|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20123291015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 61.903 1 58.663 58.163 59.163 -3.2395 0 0 0 0.23508 1 11595 11595 8.1555 2.8586 1 + 12072 25517 7613 7616 12329 12329 0.046171279889904326 EHLPKNDLI 9 Unmodified _EHLPKNDLI_ 0 0 0 REV__UNC5D|p.K363N|1|0.16|ENSG00000156687|chr8:35705933-35705933|A/C|missense_variant REV__UNC5D|p.K363N|1|0.16|ENSG00000156687|chr8:35705933-35705933|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2019348144531 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 102.62 1 98.597 98.097 99.097 -4.0212 0 0 0 0.23508 1 19725 19725 4.1895 0.59301 1 + 12073 25517 7613 7616 12330 12330 0.046171279889904326 EHLQKLNY 8 Unmodified _EHLQKLNY_ 0 0 0 REV__ENSG00000183423|ENST00000594814|LRIT3 REV__ENSG00000183423|ENST00000594814|LRIT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.267333984375 2 522.777274 1043.53999 -0.97397 -0.00050917 -2.4458 -0.0012786 -3.4198 -0.0017878 522.7758246995969 19.357 0.14034 17.722 17.634 17.775 -1.6351 5 3 2 0 0 0 0.97173 1 2918 2918 18.135 7.3111 1 208330 + 12074 18834 7614 7617 12331 12331 0.019965723004588654 EHLRTYYY 8 Unmodified _EHLRTYYY_ 0 0 0 REV__nc|ENSG00000197933|P16415-2|ZNF823 REV__nc|ENSG00000197933|P16415-2|ZNF823 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 382.1855773925781 3 382.185579 1143.53491 NaN NaN NaN NaN NaN NaN NaN 112.25 1 107.98 107.48 108.48 -4.2725 0 0 0 0.21486 1 21613 21613 3.9444 1.2092 1 + 12075 19373 7615 7618 12332 12332 -0.03111731562148634 EHLSQLLGP 9 Unmodified _EHLSQLLGP_ 0 0 0 REV__ENST00000485803.5_1_1:38462804-38462915:-|nuORF REV__ENST00000485803.5_1_1:38462804-38462915:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.0159912109375 3 331.850308 992.529095 -0.42947 -0.00014252 0.47128 0.0001564 0.041811 1.3875E-05 331.85042106640464 34.147 2.0067 34.147 32.954 34.961 0 186 57 4 0 0 0 0.8825 1 6374 6374 2.7352 2.5283 1 9496000 + 12076 22227 7616 7619 12333 12333 0.03253169926188093 EHLSQLLGP 9 Unmodified _EHLSQLLGP_ 0 0 0 REV__ENST00000485803.5_1_1:38462804-38462915:-|nuORF REV__ENST00000485803.5_1_1:38462804-38462915:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 331.850308 992.529095 -0.40272 -0.00013364 0.39164 0.00012997 -0.011077 -3.676E-06 331.8503863613945 36.426 2.2097 34.088 32.598 34.808 -2.3375 -0.004488 -0.00015246 NaN 2.7352 197 62 4 NaN NaN NaN NaN 0 NaN NaN 0 8236300 + 12077 22227 7616 7619 0.03253169926188093 EHMCPCMY 8 Unmodified _EHMCPCMY_ 0 0 0 ENST00000547318.5_1_12:51453643-51453715:+|nuORF ENST00000547318.5_1_12:51453643-51453715:+|nuORF ENST00000547318.5_1_12:51453643-51453715:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 507.1977233886719 2 507.171027 1012.3275 NaN NaN NaN NaN NaN NaN NaN 118.94 1 114.53 114.03 115.03 -4.4088 0 0 0 0.2396 1 22890 22890 0.12286 0 1 12078 11140 7617 7620 12334 12334 -0.1781704468934322 EHNFFKEK 8 Unmodified _EHNFFKEK_ 0 0 0 nc|ENSG00000067208|O60447|EVI5;nc|ENSG00000067208|O60447-2|EVI5;ENSG00000067208|ENST00000684568|EVI5 nc|ENSG00000067208|O60447|EVI5 nc|ENSG00000067208|O60447|EVI5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2131042480469 3 360.182058 1077.52434 NaN NaN NaN NaN NaN NaN NaN 18.598 1 17.287 16.787 17.787 -1.3109 0 0 0 0.21486 1 3029 3029 10.074 1.9184 1 12079 1387 7618 7621 12335 12335 -0.011317142165808036 EHNGPFVGL 9 Unmodified _EHNGPFVGL_ 0 0 0 REV__nc|ENSG00000089250|P29475-2|NOS1 REV__nc|ENSG00000089250|P29475-2|NOS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.18011474609375 3 323.831137 968.47158 -0.26789 -8.6751E-05 -0.32248 -0.00010443 -0.59037 -0.00019118 323.8311055601387 65.462 0.57126 62.415 62.105 62.676 -3.047 21 16 2 0 0 0 0.87262 1 12630 12630 8.7454 1.4562 1 1614600 + 12080 14528 7619 7622 12336 12336 -0.013916722793851477 EHNLKYHPG 9 Unmodified _EHNLKYHPG_ 0 0 0 ENSG00000165156|ENST00000395571|ZHX1;ZHX1|p.T668Nfs*3|1|0.48|ENSG00000165156|chr8:123253944-123253945|-/T|frameshift_variant;ZHX1|p.T668Hfs*37|1|0.1|ENSG00000165156|chr8:123253945-123253945|T/-|frameshift_variant ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7755737304688 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 54.687 1 51.803 51.303 52.303 -2.8837 0 0 0 0.21065 1 10444 10444 20.454 1.0146 1 12081 5603 7620 7623 12337 12337 -0.01253195985077582 EHPELRKS 8 Unmodified _EHPELRKS_ 0 0 0 ENSG00000006283|ENST00000359106|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;CACNA1G|p.P2298Afs*13|1|0.4|ENSG00000006283|chr17:50626502-50626503|-/G|frameshift_variant;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;CACNA1G|p.E2317Rfs*47|1|0.22|ENSG00000006283|chr17:50626559-50626559|C/-|frameshift_variant;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;CACNA1G|p.E1556Rfs*15|1|0.23|ENSG00000006283|chr17:50607978-50607978|G/-|frameshift_variant ENSG00000006283|ENST00000359106|CACNA1G ENSG00000006283|ENST00000359106|CACNA1G MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.99951171875 3 332.513807 994.519593 -0.38932 -0.00012946 0.80602 0.00026801 0.41669 0.00013856 332.5137848855556 24.126 0.30081 24.126 23.933 24.234 0 13 8 2 0 0 0 1.0252 1 4147 4147 1.3295 0 1 404770 12082 361 7621 7624 12338 12338 0.022114016406590054 EHPQDGAKL 9 Unmodified _EHPQDGAKL_ 0 0 0 ENST00000495425.6_1_17:19458825-19480863:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1 ENST00000495425.6_1_17:19458825-19480863:+|nuORF ENST00000495425.6_1_17:19458825-19480863:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.1707763671875 3 332.169929 993.487959 NaN NaN NaN NaN NaN NaN NaN 66.328 1 63.007 62.507 63.507 -3.3204 0 0 0 0.23508 1 12484 12484 7.609 0.31972 1 12083 4419 7622 7625 12339 12339 -0.00904591113294373 EHPRQVFRTWL 11 Unmodified _EHPRQVFRTWL_ 0 0 0 REV__ENST00000321153.8_1_11:809678-809873:+|nuORF REV__ENST00000321153.8_1_11:809678-809873:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2657470703125 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 115.08 1 115.08 114.58 115.58 0 0 0 0 0.22632 1 22644 22644 0.58532 0 1 + 12084 20550 7623 7626 12340 12340 0.0583404873998461 EHPVLTNAL 9 Unmodified _EHPVLTNAL_ 0 0 0 REV__nc|ENSG00000197891|Q96S37-2|SLC22A12 REV__nc|ENSG00000197891|Q96S37-2|SLC22A12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.16943359375 3 331.850308 992.529095 -0.74421 -0.00024697 0.76419 0.0002536 0.019982 6.6311E-06 331.8503883203347 63.349 0.66178 63.349 62.945 63.607 0 29 18 2 0 0 0 0.60805 1 12139 12139 8.1555 0.8663 1 1339300 + 12085 19369 7624 7627 12341 12341 0.032531699261767244 EHPVLTNAL 9 Unmodified _EHPVLTNAL_ 0 0 0 REV__nc|ENSG00000197891|Q96S37-2|SLC22A12 REV__nc|ENSG00000197891|Q96S37-2|SLC22A12 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 331.850308 992.529095 -0.74421 -0.00024697 0.76419 0.0002536 0.019982 6.6311E-06 331.8503883203347 63.349 0.66178 63.349 62.945 63.607 0 -0.061961 0.00049676 NaN 8.1555 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1339300 + 12086 19369 7624 7627 0.032531699261767244 EHPVLTNAL 9 Unmodified _EHPVLTNAL_ 0 0 0 REV__nc|ENSG00000197891|Q96S37-2|SLC22A12 REV__nc|ENSG00000197891|Q96S37-2|SLC22A12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 331.850308 992.529095 0.28229 9.3677E-05 -0.42122 -0.00013978 -0.13893 -4.6106E-05 331.850080658304 66.971 0.63175 63.475 63.08 63.711 -3.4965 0.063695 -0.00068338 NaN 8.1555 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1548300 + 12087 19369 7624 7627 0.032531699261767244 EHQIGPREI 9 Unmodified _EHQIGPREI_ 0 0 0 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2010803222656 3 360.192845 1077.55671 -0.54639 -0.00019681 0.50345 0.00018134 -0.042937 -1.5466E-05 360.19294083078677 59.96 0.76847 59.96 59.612 60.381 0 42 21 3 0 0 0 0.58077 1 11500 11500 14.405 0 1 3277200 12088 1926 7625 7628 12342 12342 0.02103073186435722 EHQIGPREI 9 Unmodified _EHQIGPREI_ 0 0 0 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2126159667969 3 360.192845 1077.55671 -0.18996 -6.8424E-05 0.277 9.9773E-05 0.087035 3.1349E-05 360.19287266674075 62.698 0.59513 59.736 59.392 59.987 -2.9614 45 16 4 0 0 0 0.45059 2 12108 12073;12108 22.658 0 1 5154700 12089 1926 7625 7628 12343;12344 12344 0.02103073186435722 EHQIGPREI 9 Unmodified _EHQIGPREI_ 0 0 0 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20172119140625 3 360.192845 1077.55671 0.16283 5.865E-05 -0.35898 -0.0001293 -0.19615 -7.0652E-05 360.192701504849 63.167 0.61142 59.751 59.433 60.045 -3.4158 37 16 3 0 0 0 0.45059 1 11800 11800 22.658 2.2436 1 3283000 12090 1926 7625 7628 12345 12345 0.02103073186435722 EHQIGPREI 9 Unmodified _EHQIGPREI_ 0 0 0 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.192845 1077.55671 NaN NaN NaN NaN NaN NaN NaN 58.457 1 55.205 54.705 55.705 -3.2517 0 0 0 0.23508 1 10863 10863 3.8763 0.59502 1 12091 1926 7625 7628 12346 12346 0.02103073186435722 EHQIGPREI 9 Unmodified _EHQIGPREI_ 0 0 0 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2010498046875 3 360.192845 1077.55671 -0.44659 -0.00016086 0.50167 0.0001807 0.05508 1.9839E-05 360.19294748225894 62.968 0.65108 59.711 59.471 60.122 -3.2567 42 18 3 0 0 0 0.45059 1 11846 11846 22.658 7.4096 1 3911400 12092 1926 7625 7628 12347 12347 0.02103073186435722 EHQKNQDRLLR 11 Unmodified _EHQKNQDRLLR_ 0 0 0 ZNF569|p.K464Nfs*78|1|0.1|ENSG00000196437|chr19:37413266-37413266|T/-|frameshift_variant;ENSG00000196437|ENST00000316950|ZNF569 ZNF569|p.K464Nfs*78|1|0.1|ENSG00000196437|chr19:37413266-37413266|T/-|frameshift_variant ZNF569|p.K464Nfs*78|1|0.1|ENSG00000196437|chr19:37413266-37413266|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.1999816894531 4 359.948379 1435.76441 -0.82303 -0.00029625 1.0737 0.00038646 0.25063 9.0215E-05 359.94875002651264 15.503 0.13727 14.287 14.204 14.342 -1.2159 6 3 2 0 0 0 0.80907 1 2392 2392 2.4348 0.97967 1 629540 12093 7266 7626 7629 12348 12348 0.0639565538365332 EHQMKGKA 8 Unmodified _EHQMKGKA_ 0 0 0 ENSG00000169495|ENST00000302495|HTRA4 ENSG00000169495|ENST00000302495|HTRA4 ENSG00000169495|ENST00000302495|HTRA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2389221191406 2 464.737094 927.459635 0.48725 0.00022644 1.93 0.00089695 2.4173 0.0011234 464.7384807897713 29.595 0.38225 27.52 27.276 27.658 -2.0743 14 10 2 0 0 0 0.71273 1 5016 5016 12.532 1.7076 1 640860 12094 5983 7627 7630 12349 12349 -0.006996122942155125 EHREKLLKKMQ 11 Unmodified _EHREKLLKKMQ_ 0 0 0 ENSG00000233802|ENST00000623787|TRIM49D2;ENSG00000223417|ENST00000420869|TRIM49D1 ENSG00000233802|ENST00000623787|TRIM49D2 ENSG00000233802|ENST00000623787|TRIM49D2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.1999206542969 4 360.70924 1438.80785 -0.56866 -0.00020512 -0.94493 -0.00034084 -1.5136 -0.00054597 360.7089421071537 15.459 0.1679 14.237 14.133 14.301 -1.2219 6 4 2 0 0 0 0.96216 1 2178 2178 1.3296 0 1 310390 12095 7772 7628 7631 12350 12350 0.10600128836540534 EHRQQEAERQK 11 Unmodified _EHRQQEAERQK_ 0 0 0 ENSG00000215817|ENST00000651890|ZC3H11B;nc|ENSG00000214558|P0DQW0|ZC3H11C ENSG00000215817|ENST00000651890|ZC3H11B ENSG00000215817|ENST00000651890|ZC3H11B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24566650390625 3 480.243039 1437.70729 0.00029629 1.4229E-07 0.57725 0.00027722 0.57755 0.00027736 480.2433968993336 30.253 0.52961 30.253 29.955 30.485 0 29 14 4 0 0 0 0.80038 1 5423 5423 3.5927 0.96144 1 2672600 12096 7752 7629 7632 12351 12351 0.0059418810726583615 EHRVISIV 8 Unmodified _EHRVISIV_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A REV__ENSG00000198785|ENST00000361820|GRIN3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.03497314453125 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 74.224 1 74.224 73.724 74.724 0 0 0 0 0.21486 1 14407 14407 1.6526 0 1 + 12097 19448 7630 7633 12352 12352 0.07245180025722675 EHRVISIV 8 Unmodified _EHRVISIV_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A REV__ENSG00000198785|ENST00000361820|GRIN3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.1828918457031 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 111.32 1 111.32 110.82 111.82 0 0 0 0 0.21486 1 21897 21897 1.6526 0 1 + 12098 19448 7630 7633 12353 12353 0.07245180025722675 EHRVISIV 8 Unmodified _EHRVISIV_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A REV__ENSG00000198785|ENST00000361820|GRIN3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.18255615234375 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 111.58 1 111.58 111.08 112.08 0 0 0 0 0.21486 1 21951 21951 1.6526 0 1 + 12099 19448 7630 7633 12354 12354 0.07245180025722675 EHRVISIV 8 Unmodified _EHRVISIV_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A REV__ENSG00000198785|ENST00000361820|GRIN3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.17010498046875 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 115.04 1 115.04 114.54 115.54 0 0 0 0 0.21486 1 22638 22638 0.40072 0 1 + 12100 19448 7630 7633 12355 12355 0.07245180025722675 EHRVISIV 8 Unmodified _EHRVISIV_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A REV__ENSG00000198785|ENST00000361820|GRIN3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.154296875 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 117.84 1 117.84 117.34 118.34 0 0 0 0 0.21486 1 23213 23213 1.6526 0 1 + 12101 19448 7630 7633 12356 12356 0.07245180025722675 EHRVISIV 8 Unmodified _EHRVISIV_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A REV__ENSG00000198785|ENST00000361820|GRIN3A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.196044921875 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 115.21 1 110.66 110.16 111.16 -4.555 0 0 0 0.21486 1 22120 22120 1.6526 0 1 + 12102 19448 7630 7633 12357 12357 0.07245180025722675 EHRVISIV 8 Unmodified _EHRVISIV_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A REV__ENSG00000198785|ENST00000361820|GRIN3A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.1702880859375 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 121.04 1 116.36 115.86 116.86 -4.6873 0 0 0 0.21486 1 23236 23236 1.6526 0 1 + 12103 19448 7630 7633 12358 12358 0.07245180025722675 EHRVSWAA 8 Unmodified _EHRVSWAA_ 0 0 0 REV__ENST00000556129.1_1_15:91529228-91537723:-|nuORF REV__ENST00000556129.1_1_15:91529228-91537723:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7419128417969 2 478.240858 954.467164 -0.14586 -6.9755E-05 0.29477 0.00014097 0.14891 7.1213E-05 478.24088495493004 17.322 0.41682 17.322 17.1 17.517 0 25 11 4 0 0 0 0.69085 1 2728 2728 15.768 1.1865 1 3394100 + 12104 21474 7631 7634 12359 12359 -0.011891367022940358 EHRYHQDP 8 Unmodified _EHRYHQDP_ 0 0 0 ENST00000531484.5_1_11:65421851-65429483:-|nuORF;ENST00000532776.5_1_11:65429156-65429483:-|nuORF ENST00000531484.5_1_11:65421851-65429483:-|nuORF ENST00000531484.5_1_11:65421851-65429483:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.1650695800781 3 361.165178 1080.47371 NaN NaN NaN NaN NaN NaN NaN 80.274 1 76.598 76.098 77.098 -3.676 0 0 0 0.21486 1 15303 15303 3.9444 0 1 12105 10969 7632 7635 12360 12360 -0.06331243541580989 EHSCSSLES 9 Unmodified _EHSCSSLES_ 0 0 0 REV__ETV5|p.A107V|1|0.38|ENSG00000244405|chr3:186081088-186081088|G/A|missense_variant REV__ETV5|p.A107V|1|0.38|ENSG00000244405|chr3:186081088-186081088|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26739501953125 2 489.695289 977.376025 1.2887 0.00063107 0.089726 4.3938E-05 1.3784 0.00067501 489.6953694217661 25.882 0.41223 24.234 24.035 24.447 -1.6482 19 11 2 0 0 0 0.8319 1 4539 4539 12.532 2.3482 1 663840 + 12106 19810 7633 7636 12361 12361 -0.11356813252587017 EHSCSSLES 9 Unmodified _EHSCSSLES_ 0 0 0 REV__ETV5|p.A107V|1|0.38|ENSG00000244405|chr3:186081088-186081088|G/A|missense_variant REV__ETV5|p.A107V|1|0.38|ENSG00000244405|chr3:186081088-186081088|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2564697265625 2 489.695289 977.376025 0.21271 0.00010416 0.86216 0.00042219 1.0749 0.00052636 489.6957097135728 25.733 0.37854 24.098 23.96 24.338 -1.6347 18 10 2 0 0 0 0.8319 1 4263 4263 12.532 4.6214 1 1112500 + 12107 19810 7633 7636 12362 12362 -0.11356813252587017 EHSGEERDESG 11 Unmodified _EHSGEERDESG_ 0 0 0 REV__TYW1|p.E270D|1|0.4|ENSG00000198874|chr7:67018092-67018092|G/T|missense_variant REV__TYW1|p.E270D|1|0.4|ENSG00000198874|chr7:67018092-67018092|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1075439453125 3 411.165572 1230.47489 NaN NaN NaN NaN NaN NaN NaN 75.684 1 72.269 71.769 72.769 -3.4151 0 0 0 0.23698 1 14762 14762 2.6312 0.72486 1 + 12108 25508 7634 7637 12363 12363 -0.13113118753994968 EHSVYEAA 8 Unmodified _EHSVYEAA_ 0 0 0 REV__ENSG00000183977|ENST00000389050|PP2D1 REV__ENSG00000183977|ENST00000389050|PP2D1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7472229003906 2 453.203607 904.392661 -0.057742 -2.6169E-05 0.17406 7.8884E-05 0.11632 5.2715E-05 453.20357417701223 40.31 0.43008 37.77 37.533 37.963 -2.5398 26 11 3 0 0 0 0.74718 1 7190 7190 32.117 7.4431 1 3937200 + 12109 18876 7635 7638 12364 12364 -0.06335944304339591 EHSWFETFII 10 Unmodified _EHSWFETFII_ 0 0 0 nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A nc|ENSG00000183873|Q14524-5|SCN5A nc|ENSG00000183873|Q14524-5|SCN5A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21649169921875 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 129.67 1 125.04 124.54 125.54 -4.6292 0 0 0 0.22588 1 25552 25552 3.5871 0 1 12110 6877 7636 7639 12365 12365 -0.022866201851002188 EHTAHSTLV 9 Unmodified _EHTAHSTLV_ 0 0 0 REV__ENST00000398238.8_1_17:44834336-44834585:+|nuORF REV__ENST00000398238.8_1_17:44834336-44834585:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.0051574707031 3 332.169929 993.487959 NaN NaN NaN NaN NaN NaN NaN 124.17 1 124.17 123.67 124.67 0 0 0 0 0.23508 1 24480 24480 2.7352 0 1 + 12111 21326 7637 7640 12366 12366 -0.009045911132830042 EHTDQVLH 8 Unmodified _EHTDQVLH_ 0 0 0 nc|ENSG00000159069|Q969U6-2|FBXW5;ENSG00000159069|ENST00000325285|FBXW5 nc|ENSG00000159069|Q969U6-2|FBXW5 nc|ENSG00000159069|Q969U6-2|FBXW5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2586669921875 2 489.735606 977.456658 -0.33403 -0.00016359 0.067083 3.2853E-05 -0.26695 -0.00013073 489.73566030348206 107.54 0.55962 103.22 102.86 103.42 -4.32 23 15 2 0 0 0 8448 1 21169 21169 0.68139 0 1 1912800 12112 5185 7638 7641 12367 12367 -0.032971641473750424 EHTESFLHTC 10 Unmodified _EHTESFLHTC_ 0 0 0 REV__ENST00000327367.8_1_15:67482993-67483053:+|nuORF REV__ENST00000327367.8_1_15:67482993-67483053:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 401.3537902832031 3 401.841484 1202.50262 -0.8456 -0.0003398 0.88925 0.00035734 0.043652 1.7541E-05 401.8417667756727 13.692 0.35383 12.682 12.553 12.907 -1.0098 12 9 2 0 0 0 0.89521 1 2014 2014 3.5871 0 1 586040 + 12113 20590 7639 7642 12368 12368 -0.09052887027451106 EHTESFLHTC 10 Unmodified _EHTESFLHTC_ 0 0 0 REV__ENST00000327367.8_1_15:67482993-67483053:+|nuORF REV__ENST00000327367.8_1_15:67482993-67483053:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 401.841484 1202.50262 -0.15655 -6.2908E-05 0.23277 9.3535E-05 0.076217 3.0627E-05 401.84157642968387 13.04 0.23915 13.04 12.894 13.133 0 0.17905 -0.00045374 NaN 3.5871 14 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1234900 + 12114 20590 7639 7642 -0.09052887027451106 EHTHPAGSDRP 11 Unmodified _EHTHPAGSDRP_ 0 0 0 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2791748046875 2 602.2787 1202.54285 NaN NaN NaN NaN NaN NaN NaN 72.782 1 69.244 68.744 69.744 -3.5385 0 0 0 0.23476 1 13800 13800 4.5289 0 1 12115 5207 7640 7643 12369 12369 -0.050322043126925564 EHTTKKFS 8 Unmodified _EHTTKKFS_ 0 0 0 ENST00000529014.5_1_11:10880352-10886865:+|nuORF ENST00000529014.5_1_11:10880352-10886865:+|nuORF ENST00000529014.5_1_11:10880352-10886865:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2652587890625 2 489.256174 976.497795 -0.1182 -5.7829E-05 -0.85351 -0.00041758 -0.9717 -0.00047541 489.2557383575465 60.458 0.59307 60.458 60.174 60.767 0 36 16 3 0 0 0 0.70613 1 11577 11577 13.508 1.8676 1 4325300 12116 10945 7641 7644 12370 12370 0.00860596892096055 EHTTKKFS 8 Unmodified _EHTTKKFS_ 0 0 0 ENST00000529014.5_1_11:10880352-10886865:+|nuORF ENST00000529014.5_1_11:10880352-10886865:+|nuORF ENST00000529014.5_1_11:10880352-10886865:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2588195800781 2 489.256174 976.497795 0.18014 8.8136E-05 -1.0502 -0.00051383 -0.87008 -0.00042569 489.2556967697151 63.351 0.47128 60.353 60.017 60.488 -2.9975 33 13 3 0 0 0 0.70613 1 12247 12247 13.508 0.97634 1 5149000 12117 10945 7641 7644 12371 12371 0.00860596892096055 EHVALHAP 8 Unmodified _EHVALHAP_ 0 0 0 nc|ENSG00000157657|Q5T7W0-3|ZNF618;nc|ENSG00000157657|Q5T7W0-2|ZNF618;nc|ENSG00000157657|Q5T7W0-4|ZNF618;ZNF618|p.N872Mfs*52|2|0.38|ENSG00000157657|chr9:114049913-114049913|A/-|frameshift_variant;ENSG00000157657|ENST00000374126|ZNF618 nc|ENSG00000157657|Q5T7W0-3|ZNF618 nc|ENSG00000157657|Q5T7W0-3|ZNF618 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2314147949219 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 87.14 1 83.411 82.911 83.911 -3.7289 0 0 0 0.20568 1 16670 16670 20.871 6.2895 1 12118 5135 7642 7645 12372 12372 0.009123624117592044 EHVDHRAP 8 Unmodified _EHVDHRAP_ 0 0 0 REV__ENST00000380913.7_1_X:9915219-9915453:+|nuORF REV__ENST00000380913.7_1_X:9915219-9915453:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25146484375 2 480.73594 959.457327 -0.087807 -4.2212E-05 -1.4837 -0.00071327 -1.5715 -0.00075549 480.7353157620412 17.193 0.31523 17.193 17.03 17.345 0 18 8 3 0 0 0 0.73936 1 2688 2688 8.5933 0.68312 1 944380 + 12119 21163 7643 7646 12373 12373 -0.024023247076797816 EHVKYGYW 8 Unmodified _EHVKYGYW_ 0 0 0 REV__ENST00000378654.8_1_13:48523133-48523638:-|nuORF REV__ENST00000378654.8_1_13:48523133-48523638:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1399841308594 3 361.174903 1080.50288 -0.23311 -8.4193E-05 -1.3324 -0.00048122 -1.5655 -0.00056541 361.175172553344 80.323 0.63173 76.813 76.476 77.108 -3.5102 35 17 3 0 0 0 0.76728 1 15642 15642 3.9444 0 1 1188700 + 12120 21118 7644 7647 12374 12374 -0.03415099245307829 EHVKYGYW 8 Unmodified _EHVKYGYW_ 0 0 0 REV__ENST00000378654.8_1_13:48523133-48523638:-|nuORF REV__ENST00000378654.8_1_13:48523133-48523638:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 361.174903 1080.50288 -0.021188 -7.6526E-06 -1.0937 -0.00039502 -1.1149 -0.00040267 361.50842287503946 80.596 0.58781 76.756 76.354 76.942 -3.8392 0.011317 -5.0926E-05 NaN 3.9444 32 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1540300 + 12121 21118 7644 7647 -0.03415099245307829 EHVLEAPWLGP 11 Unmodified _EHVLEAPWLGP_ 0 0 0 REV__ENST00000515213.1_1_7:420976-421372:+|nuORF REV__ENST00000515213.1_1_7:420976-421372:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 416.0407409667969 3 416.552151 1246.63462 -1.352 -0.00056317 -0.86358 -0.00035973 -2.2156 -0.0009229 416.55180720708603 19.563 0.34213 17.928 17.775 18.117 -1.6351 23 9 3 0 0 0 0.96192 1 2952 2952 1.3296 0.55311 1 3220900 + 12122 22584 7645 7648 12375 12375 0.021170860517941037 EHVSICPF 8 Unmodified _EHVSICPF_ 0 0 0 ENST00000531704.5_1_X:74493981-74494059:+|nuORF ENST00000531704.5_1_X:74493981-74494059:+|nuORF ENST00000531704.5_1_X:74493981-74494059:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 466.7271728515625 2 466.220746 930.426938 -0.029509 -1.3758E-05 2.1392 0.00099733 2.1097 0.00098357 466.22049654338184 64.664 0.69482 61.666 61.325 62.02 -2.9975 38 19 3 0 0 0 8448 1 12499 12499 0.25148 0 1 2454300 12123 10971 7646 7649 12376 12376 -0.04105819417077328 EHVVEFGL 8 Unmodified _EHVVEFGL_ 0 0 0 ENSG00000070018|ENST00000261349|LRP6;ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68171724-68216535:+|nuORF;LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant;LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant ENSG00000070018|ENST00000261349|LRP6;ENSG00000162337|ENST00000294304|LRP5 ENSG00000070018|ENST00000261349|LRP6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2412414550781 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 63.546 1 60.548 60.048 61.048 -2.9975 0 0 0 0.21323 1 12282 12282 14.582 1.0738 1 12124 1424;5321 7647 7650 12377 12377 -0.0016619051090174253 EHVVEFGL 8 Unmodified _EHVVEFGL_ 0 0 0 ENSG00000070018|ENST00000261349|LRP6;ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68171724-68216535:+|nuORF;LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant;LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant ENSG00000070018|ENST00000261349|LRP6;ENSG00000162337|ENST00000294304|LRP5 ENSG00000070018|ENST00000261349|LRP6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24090576171875 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 63.945 1 60.529 60.029 61.029 -3.4158 0 0 0 0.19954 1 11958 11958 24.674 9.8356 1 12125 1424;5321 7647 7650 12378 12378 -0.0016619051090174253 EHVVEFGL 8 Unmodified _EHVVEFGL_ 0 0 0 ENSG00000070018|ENST00000261349|LRP6;ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68171724-68216535:+|nuORF;LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant;LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant ENSG00000070018|ENST00000261349|LRP6;ENSG00000162337|ENST00000294304|LRP5 ENSG00000070018|ENST00000261349|LRP6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24951171875 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 64.012 1 60.596 60.096 61.096 -3.4158 0 0 0 0.23025 1 11971 11971 1.4551 0 1 12126 1424;5321 7647 7650 12379 12379 -0.0016619051090174253 EIAAWLHQIA 10 Unmodified _EIAAWLHQIA_ 0 0 0 REV__ENST00000381584.5_2_10:225952-243884:+|nuORF REV__ENST00000381584.5_2_10:225952-243884:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3117065429688 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 86.522 1 82.794 82.294 83.294 -3.727 0 0 0 0.22588 1 16912 16912 12.241 0.60036 1 + 12127 13959 7648 7651 12380 12380 0.044211207429498245 EIADLEERAKS 11 Unmodified _EIADLEERAKS_ 0 0 0 ENSG00000165494|ENST00000690938|PCF11;nc|ENSG00000165494|O94913|PCF11 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7675170898438 2 630.825149 1259.63574 NaN NaN NaN NaN NaN NaN NaN 129.71 1 129.71 129.21 130.21 0 0 0 0 0.22421 1 25628 25628 12.873 0.63195 1 12128 5633 7649 7652 12381 12381 0.016312556300363212 EIADRTPQ 8 Unmodified _EIADRTPQ_ 0 0 0 nc|ENSG00000155085|Q5TCS8-3|AK9;AK9|p.R1209Gfs*39|2|0.33|ENSG00000155085|chr6:109529019-109529019|T/-|frameshift_variant;nc|ENSG00000155085|Q5TCS8-6|AK9;ENSG00000155085|ENST00000424296|AK9;ENST00000466992.1_1_6:109871214-109940313:-|nuORF nc|ENSG00000155085|Q5TCS8-3|AK9 nc|ENSG00000155085|Q5TCS8-3|AK9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2378234863281 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 53.367 1 53.367 52.867 53.867 0 0 0 0 0.21292 1 10161 10161 14.838 3.198 1 12129 109 7650 7653 12382 12382 -0.005682800046201919 EIAIAPLTI 9 Unmodified _EIAIAPLTI_ 0 0 0 ENSG00000152578|ENST00000282499|GRIA4 ENSG00000152578|ENST00000282499|GRIA4 ENSG00000152578|ENST00000282499|GRIA4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.16766357421875 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 115.77 1 111.29 110.79 111.79 -4.4841 0 0 0 0.23508 1 22825 22825 7.609 0.88579 1 12130 4931 7651 7654 12383 12383 0.09188412734147278 EIAKTVLISL 10 Unmodified _EIAKTVLISL_ 0 0 0 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;DNAH8|p.V3263Sfs*23|1|0.16|ENSG00000124721|chr6:38918047-38918048|-/A|frameshift_variant;DNAH8|p.V3263Sfs*28|1|0.47|ENSG00000124721|chr6:38918048-38918048|A/-|frameshift_variant;DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant;DNAH8|p.L1333Ffs*8|1|0.2|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant;DNAH8|p.N1473Kfs*8|1|0.3|ENSG00000124721|chr6:38848663-38848664|-/A|frameshift_variant;DNAH8|p.S1932Lfs*8|1|0.39|ENSG00000124721|chr6:38864002-38864002|T/-|frameshift_variant;DNAH8|p.S2184Lfs*8|1|0.39|ENSG00000124721|chr6:38872741-38872741|T/-|frameshift_variant;DNAH8|p.F2607Lfs*22|2|0.32|ENSG00000124721|chr6:38886999-38886999|T/-|frameshift_variant;DNAH8|p.F2835Lfs*10|1|0.14|ENSG00000124721|chr6:38899865-38899865|T/-|frameshift_variant;DNAH8|p.A853Lfs*9|1|0.12|ENSG00000124721|chr6:38807662-38807662|A/-|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7792358398438 2 543.842082 1085.66961 NaN NaN NaN NaN NaN NaN NaN 136.74 1 131.91 131.41 132.41 -4.8307 0 0 0 2.8426 1 26337 26337 0.26539 0 1 12131 867 7652 7655 12384 12384 0.1302032885976132 EICPEKLSY 9 Unmodified _EICPEKLSY_ 0 0 0 ENSG00000153896|ENST00000329285|ZNF599 ENSG00000153896|ENST00000329285|ZNF599 ENSG00000153896|ENST00000329285|ZNF599 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7921752929688 2 541.26535 1080.51615 0.1723 9.326E-05 1.3435 0.00072721 1.5158 0.00082047 541.2654974330231 89.704 0.86896 89.704 89.281 90.15 0 100 24 6 0 0 0 0.60805 1 17458 17458 12.532 0.89125 1 31211000 12132 4983 7653 7656 12385 12385 -0.02089029248213592 EICVRAQP 8 Unmodified _EICVRAQP_ 0 0 0 ENST00000366959.4_1_1:213447250-213447538:+|nuORF ENST00000366959.4_1_1:213447250-213447538:+|nuORF ENST00000366959.4_1_1:213447250-213447538:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23828125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 78.719 1 78.719 78.219 79.219 0 0 0 0 0.20462 1 15320 15320 21.747 0 1 12133 9054 7654 7657 12386 12386 0.003732718485366604 EIDGRSISLY 10 Unmodified _EIDGRSISLY_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3186645507812 2 576.798403 1151.58225 0.66689 0.00038466 -0.18598 -0.00010727 0.48091 0.00027739 576.7984401097973 103.26 0.40744 103.26 102.97 103.37 0 17 11 2 0 0 0 0.3662 1 20250 20250 49.554 18.918 1 1805800 12134 2821;10069 7655 7658 12387 12387 0.01252502918191567 EIDGRSISLY 10 Unmodified _EIDGRSISLY_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3182983398438 2 576.798403 1151.58225 -0.42235 -0.00024361 0.57986 0.00033446 0.15751 9.0853E-05 576.7987829358914 107.54 0.65876 103.22 102.89 103.55 -4.32 33 18 3 0 0 0 0.21282 1 21170 21170 61.602 23.628 1 2467400 12135 2821;10069 7655 7658 12388 12388 0.01252502918191567 EIDGRSISLY 10 Unmodified _EIDGRSISLY_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3145141601562 2 576.798403 1151.58225 0.068158 3.9314E-05 -0.055983 -3.2291E-05 0.012176 7.023E-06 576.7985533108011 107.56 0.51607 103.15 102.89 103.4 -4.4121 29 14 3 0 0 0 0.10731 1 20628 20628 57.722 19.748 1 2489700 12136 2821;10069 7655 7658 12389 12389 0.01252502918191567 EIDGRSISLY 10 Unmodified _EIDGRSISLY_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3370361328125 2 576.798403 1151.58225 0.71217 0.00041078 -0.4311 -0.00024866 0.28107 0.00016212 576.798268832535 107.29 0.61381 103.16 102.88 103.49 -4.135 24 17 2 0 0 0 0.25241 1 20649 20649 57.722 27.085 1 1589900 12137 2821;10069 7655 7658 12390 12390 0.01252502918191567 EIDQCTSNY 9 Unmodified _EIDQCTSNY_ 0 0 0 REV__ENSG00000173809|ENST00000639142|TDRD12 REV__ENSG00000173809|ENST00000639142|TDRD12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 358.1463623046875 3 358.146573 1071.41789 -0.46457 -0.00016638 1.0179 0.00036455 0.55331 0.00019817 358.1469430463947 75.899 0.58002 72.265 71.964 72.544 -3.6337 22 16 2 0 0 0 0.78323 1 14493 14493 2.4985 0 1 2175300 + 12138 18376 7656 7659 12391 12391 -0.11496257564067491 EIDQCTSNY 9 Unmodified _EIDQCTSNY_ 0 0 0 REV__ENSG00000173809|ENST00000639142|TDRD12 REV__ENSG00000173809|ENST00000639142|TDRD12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 358.146573 1071.41789 -0.31783 -0.00011383 1.1971 0.00042873 0.87926 0.00031491 358.14703215474407 75.685 0.4201 72.27 71.984 72.404 -3.4151 0.0024144 0.00010299 NaN 2.4985 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1291900 + 12139 18376 7656 7659 -0.11496257564067491 EIDQCTSNY 9 Unmodified _EIDQCTSNY_ 0 0 0 REV__ENSG00000173809|ENST00000639142|TDRD12 REV__ENSG00000173809|ENST00000639142|TDRD12 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 358.146573 1071.41789 -0.46457 -0.00016638 1.0179 0.00036455 0.55331 0.00019817 358.1469430463947 75.899 0.58002 72.265 71.964 72.544 -3.6337 -0.0024144 -8.9563E-05 NaN 2.4985 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2175300 + 12140 18376 7656 7659 -0.11496257564067491 EIDQYQKY 8 Unmodified _EIDQYQKY_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7954711914062 2 543.758746 1085.50294 0.31648 0.00017209 -2.5272 -0.0013742 -2.2107 -0.0012021 543.7572604202292 96.743 0.59254 96.743 96.421 97.013 0 24 16 2 0 0 0 0.18731 1 18933 18933 46.921 8.7697 1 1362000 12141 1648 7657 7660 12392 12392 -0.03639144035946629 EIDQYQKY 8 Unmodified _EIDQYQKY_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7711791992188 2 543.758746 1085.50294 0.32557 0.00017703 -2.2565 -0.001227 -1.9309 -0.0010499 543.7575964102936 101.25 0.67157 96.956 96.505 97.176 -4.297 27 19 2 0 0 0 0.6199 1 19416 19416 20.871 6.2895 1 1955100 12142 1648 7657 7660 12393 12393 -0.03639144035946629 EIDQYQKY 8 Unmodified _EIDQYQKY_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.758746 1085.50294 0.2431 0.00013219 -2.5733 -0.0013992 -2.3302 -0.001267 543.7572591663275 101.02 0.59296 96.86 96.6 97.192 -4.1594 0.0063983 -0.00019702 NaN 46.921 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1069000 12143 1648 7657 7660 -0.03639144035946629 EIDRVIGQG 9 Unmodified _EIDRVIGQG_ 0 0 0 ENST00000492633.5_1_1:60370173-60378128:-|nuORF;ENST00000469406.5_1_1:60370173-60392418:-|nuORF;CYP2J2|p.P474Qfs*6|1|0.16|ENSG00000134716|chr1:59893739-59893739|G/-|frameshift_variant;ENSG00000134716|ENST00000371204|CYP2J2 ENST00000492633.5_1_1:60370173-60378128:-|nuORF ENST00000492633.5_1_1:60370173-60378128:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 495.2454528808594 2 493.766906 985.519259 0.13919 6.8726E-05 0.51128 0.00025245 0.65047 0.00032118 493.76710010804976 83.829 1.0966 79.919 79.36 80.457 -3.9093 80 30 4 0 0 0 0.25976 1 15894 15894 22.109 4.996 1 29201000 12144 769 7658 7661 12394 12394 0.025919819208297668 EIECFEEVS 9 Unmodified _EIECFEEVS_ 0 0 0 REV__SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant REV__SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 362.1561584472656 3 362.154957 1083.44304 NaN NaN NaN NaN NaN NaN NaN 135.62 1 130.72 130.22 131.22 -4.8951 0 0 0 0.23508 1 26054 26054 2.7352 1.6637 1 + 12145 15080 7659 7662 12395 12395 -0.09534202761483357 EIEDLKRNQ 9 Unmodified _EIEDLKRNQ_ 0 0 0 USO1|p.E741D|1|0.04|ENSG00000138768|chr4:75805237-75805237|A/T|missense_variant USO1|p.E741D|1|0.04|ENSG00000138768|chr4:75805237-75805237|A/T|missense_variant USO1|p.E741D|1|0.04|ENSG00000138768|chr4:75805237-75805237|A/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 573.1408081054688 2 572.801477 1143.5884 0.52983 0.00030349 -3.1926 -0.0018287 -2.6627 -0.0015252 573.3013261051884 173.71 0.19781 168.83 168.68 168.88 -4.881 9 5 2 0 0 0 0.84208 1 34545 34545 3.9444 2.4625 1 4976100 12146 26558 7660 7663 12396 12396 0.022350211497041528 EIEEDRKK 8 Unmodified _EIEEDRKK_ 0 0 0 CCDC9|p.T458Pfs*51|1|0.53|ENSG00000105321|chr19:47271449-47271449|C/-|frameshift_variant;ENSG00000105321|ENST00000221922|CCDC9;chr19:47272161-47273357|466|29.3|0.0|21.48|+|ENST00000643617|CCDC9,CCDC9 REV__ENSG00000154479|ENST00000447353|CFAP210 REV__ENSG00000154479|ENST00000447353|CFAP210 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6768188476562 2 523.77747 1045.54039 -0.029616 -1.5512E-05 -0.43156 -0.00022604 -0.46118 -0.00024155 523.777144976273 83.321 0.37225 79.623 79.422 79.795 -3.6985 19 10 2 0 0 0 0.96284 1 15877 15877 4.756 0 1 1578900 12147 17182 7661 7664 12397 12397 0.019439472296653548 EIEEPDLSY 9 Unmodified _EIEEPDLSY_ 0 0 0 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7879028320312 2 547.748044 1093.48154 0.021892 1.1991E-05 0.10822 5.9276E-05 0.13011 7.1267E-05 547.7481763026523 52.277 0.72593 49.181 48.86 49.586 -3.0954 27 20 2 0 0 0 0.8319 1 9721 9721 4.3292 0 1 1766300 + 12148 14990 7662 7665 12398 12398 -0.06146573855312454 EIEGANQL 8 Unmodified _EIEGANQL_ 0 0 0 ENST00000525696.5_1_14:24683507-24684828:-|nuORF;ENST00000532557.5_1_14:24683254-24684828:-|nuORF;nc|ENSG00000213920|Q86V88-3|MDP1;nc|ENSG00000213920|Q86V88-2|MDP1;ENST00000528804.1_1_14:24683633-24685170:-|nuORF;ENSG00000213920|ENST00000288087|MDP1 ENST00000525696.5_1_14:24683507-24684828:-|nuORF ENST00000525696.5_1_14:24683507-24684828:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2203369140625 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 97.417 1 93.182 92.682 93.682 -4.2348 0 0 0 0.22647 1 18609 18609 3.5871 0 1 12149 7708 7663 7666 12399 12399 -0.01735371270228825 EIEGPSVSI 9 Unmodified _EIEGPSVSI_ 0 0 0 ENST00000432943.6_1_8:121160081-121289735:+|nuORF;COL14A1|p.N1312Kfs*3|1|0.45|ENSG00000187955|chr8:120283741-120283742|-/A|frameshift_variant;COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant;nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1 ENST00000432943.6_1_8:121160081-121289735:+|nuORF ENST00000432943.6_1_8:121160081-121289735:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2496337890625 2 465.742565 929.470577 0.050517 2.3528E-05 -0.068884 -3.2082E-05 -0.018367 -8.5542E-06 465.74243156892453 93.785 1.1426 89.941 89.466 90.608 -3.844 82 32 4 0 0 0 0.60698 1 18071 18071 11.64 4.9171 1 18123000 12150 612 7664 7667 12400 12400 0.0030206856106360647 EIEKLLYNV 9 Unmodified _EIEKLLYNV_ 0 0 0 REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2156982421875 3 374.213135 1119.61758 0.23466 8.7813E-05 -0.32199 -0.00012049 -0.087327 -3.2679E-05 374.21294595752136 85.746 0.69958 81.795 81.422 82.122 -3.9503 57 19 4 0 0 0 0.68708 1 16282 16282 7.1017 0.47135 1 12458000 + 12151 24923 7665 7668 12401 12401 0.06255165445986677 EIEKLLYNV 9 Unmodified _EIEKLLYNV_ 0 0 0 REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21630859375 3 374.213135 1119.61758 -0.6466 -0.00024197 0.58006 0.00021707 -0.066541 -2.49E-05 374.2133342340528 85.533 0.72482 81.821 81.463 82.188 -3.7117 62 20 4 0 0 0 0.59228 1 16356 16356 13.615 0.74226 1 18524000 + 12152 24923 7665 7668 12402 12402 0.06255165445986677 EIEKRYDI 8 Unmodified _EIEKRYDI_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2706298828125 2 533.282389 1064.55022 0.42576 0.00022705 -0.016939 -9.033E-06 0.40882 0.00021802 533.2823368253147 52.475 0.52074 49.387 49.099 49.619 -3.0876 23 14 2 0 0 0 0.60622 1 9604 9604 21.747 2.4897 1 4759700 12153 5471 7666 7669 12403 12403 0.020531352350417365 EIESEILKKR 10 Unmodified _EIESEILKKR_ 0 0 0 tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1 tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1 tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7672729492188 2 622.864077 1243.7136 NaN NaN NaN NaN NaN NaN NaN 60.086 1 57.153 56.653 57.653 -2.9333 0 0 0 2.8426 1 11557 11557 0.69767 0.6244 1 12154 26419 7667 7670 12404 12404 0.10149313286092365 EIETAQLHF 9 Unmodified _EIETAQLHF_ 0 0 0 REV__ENSG00000148843|ENST00000369797|PDCD11 REV__ENSG00000148843|ENST00000369797|PDCD11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7935791015625 2 544.274564 1086.53457 0.46009 0.00025042 -0.23427 -0.00012751 0.22582 0.00012291 544.2748906318961 98.193 1.0695 98.193 97.507 98.576 0 38 19 3 0 0 0 0.38188 1 19213 19213 26.884 0 1 3786900 + 12155 16991 7668 7671 12405 12405 -0.005231512820046191 EIEYMENH 8 Unmodified _EIEYMENH_ 0 0 0 ENSG00000204178|ENST00000374343|MACO1 ENSG00000204178|ENST00000374343|MACO1 ENSG00000204178|ENST00000374343|MACO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2817993164062 2 532.721307 1063.42806 0.51571 0.00027473 0.8716 0.00046432 1.3873 0.00073905 532.7216978096524 114.19 0.94296 109.64 109.14 110.08 -4.555 44 26 2 0 0 0 0.99494 1 21922 21922 8.5933 1.304 1 5304300 12156 7564 7669 7672 12406 12406 -0.10111649838813719 EIFIDGWKS 9 Unmodified _EIFIDGWKS_ 0 0 0 REV__ENST00000233055.8_1_2:224741082-224741151:-|nuORF REV__ENST00000233055.8_1_2:224741082-224741151:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7788696289062 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 17.166 1 15.894 15.394 16.394 -1.2722 0 0 0 0.23508 1 2512 2512 4.3292 0 1 + 12157 20071 7670 7673 12407 12407 0.0013803672338781325 EIFIPIPKE 9 Unmodified _EIFIPIPKE_ 0 0 0 REV__ENSG00000160007|ENST00000672722|ARHGAP35 REV__ENSG00000160007|ENST00000672722|ARHGAP35 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.783203125 2 543.3157 1084.61685 NaN NaN NaN NaN NaN NaN NaN 27.94 1 26.185 25.685 26.685 -1.7552 0 0 0 0.23508 1 4697 4697 6.7232 0.36906 1 + 12158 17388 7671 7674 12408 12408 0.07792370796960313 EIFLAIFFFL 10 Unmodified _EIFLAIFFFL_ 0 0 0 MER30_dup2921|chr12:21469267-21469488:+|1.6627196260773784|0.481974385668547|1.79|471.0|8|3|sense MER30_dup2921|chr12:21469267-21469488:+|1.6627196260773784|0.481974385668547|1.79|471.0|8|3|sense MER30_dup2921|chr12:21469267-21469488:+|1.6627196260773784|0.481974385668547|1.79|471.0|8|3|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7523803710938 2 630.357368 1258.70018 NaN NaN NaN NaN NaN NaN NaN 16.224 1 15.002 14.502 15.502 -1.2219 0 0 0 0.22588 1 2320 2320 3.5965 0.8613 1 12159 12130 7672 7675 12409 12409 0.08118107244786188 EIFPSPTE 8 Unmodified _EIFPSPTE_ 0 0 0 ENST00000556666.5_1_14:88883017-88904763:+|nuORF;nc|ENSG00000042317|Q9P0W8-2|SPATA7;ENSG00000042317|ENST00000393545|SPATA7 ENST00000556666.5_1_14:88883017-88904763:+|nuORF ENST00000556666.5_1_14:88883017-88904763:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.17425537109375 3 307.151764 918.433463 NaN NaN NaN NaN NaN NaN NaN 100.58 1 100.58 100.08 101.08 0 0 0 0 0.21486 1 19735 19735 1.4819 0 1 12160 1200 7673 7676 12410 12410 -0.02901602984695728 EIFPSPTE 8 Unmodified _EIFPSPTE_ 0 0 0 ENST00000556666.5_1_14:88883017-88904763:+|nuORF;nc|ENSG00000042317|Q9P0W8-2|SPATA7;ENSG00000042317|ENST00000393545|SPATA7 ENST00000556666.5_1_14:88883017-88904763:+|nuORF ENST00000556666.5_1_14:88883017-88904763:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.2019348144531 3 307.151764 918.433463 NaN NaN NaN NaN NaN NaN NaN 103.87 1 103.87 103.37 104.37 0 0 0 0 0.21486 1 20414 20414 1.4819 0 1 12161 1200 7673 7676 12411 12411 -0.02901602984695728 EIFPSPTE 8 Unmodified _EIFPSPTE_ 0 0 0 ENST00000556666.5_1_14:88883017-88904763:+|nuORF;nc|ENSG00000042317|Q9P0W8-2|SPATA7;ENSG00000042317|ENST00000393545|SPATA7 ENST00000556666.5_1_14:88883017-88904763:+|nuORF ENST00000556666.5_1_14:88883017-88904763:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.1532287597656 3 307.151764 918.433463 NaN NaN NaN NaN NaN NaN NaN 110.41 1 110.41 109.91 110.91 0 0 0 0 0.21486 1 21716 21716 1.4819 0.28856 1 12162 1200 7673 7676 12412 12412 -0.02901602984695728 EIFRQRFRQFG 11 Unmodified _EIFRQRFRQFG_ 0 0 0 nc|ENSG00000172466|P17028-2|ZNF24;ENSG00000172466|ENST00000261332|ZNF24 nc|ENSG00000172466|P17028-2|ZNF24 nc|ENSG00000172466|P17028-2|ZNF24 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4011840820312 2 742.399484 1482.78442 NaN NaN NaN NaN NaN NaN NaN 167.59 1 162.64 162.14 163.14 -4.948 0 0 0 0.2367 1 32981 32981 2.9952 0.26005 1 12163 6225 7674 7677 12413 12413 0.062334511142580595 EIFRQRFRQFG 11 Unmodified _EIFRQRFRQFG_ 0 0 0 nc|ENSG00000172466|P17028-2|ZNF24;ENSG00000172466|ENST00000261332|ZNF24 nc|ENSG00000172466|P17028-2|ZNF24 nc|ENSG00000172466|P17028-2|ZNF24 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3993530273438 2 742.399484 1482.78442 NaN NaN NaN NaN NaN NaN NaN 170.33 1 165.41 164.91 165.91 -4.9149 0 0 0 0.23324 1 33673 33673 5.7319 0 1 12164 6225 7674 7677 12414 12414 0.062334511142580595 EIFRQRFRQFG 11 Unmodified _EIFRQRFRQFG_ 0 0 0 nc|ENSG00000172466|P17028-2|ZNF24;ENSG00000172466|ENST00000261332|ZNF24 nc|ENSG00000172466|P17028-2|ZNF24 nc|ENSG00000172466|P17028-2|ZNF24 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.4003295898438 2 742.399484 1482.78442 NaN NaN NaN NaN NaN NaN NaN 171.48 1 166.6 166.1 167.1 -4.873 0 0 0 0.23324 1 33985 33985 5.7319 2.7366 1 12165 6225 7674 7677 12415 12415 0.062334511142580595 EIFSSDDSF 9 Unmodified _EIFSSDDSF_ 0 0 0 REV__ENSG00000050030|ENST00000055682|NEXMIF REV__ENSG00000050030|ENST00000055682|NEXMIF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6819458007812 2 523.719287 1045.42402 NaN NaN NaN NaN NaN NaN NaN 113.28 1 108.75 108.25 109.25 -4.5259 0 0 0 0.19656 1 21744 21744 0.073264 0 1 + 12166 14081 7675 7678 12416 12416 -0.09687416060887699 EIFTPDVV 8 Unmodified _EIFTPDVV_ 0 0 0 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24151611328125 2 460.242201 918.469849 NaN NaN NaN NaN NaN NaN NaN 41.047 1 38.557 38.057 39.057 -2.4896 0 0 0 0.22674 1 7360 7360 14.838 11.251 1 + 12167 15174 7676 7679 12417 12417 0.007352739120165097 EIGALYLAA 9 Unmodified _EIGALYLAA_ 0 0 0 REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4 REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23199462890625 2 460.758018 919.501483 -0.039567 -1.8231E-05 0.28107 0.00012951 0.24151 0.00011128 460.75814001311704 96.929 0.85568 93.01 92.472 93.328 -3.9194 35 24 2 0 0 0 0.49001 1 18565 18565 36.044 17.909 1 1843500 + 12168 15231 7677 7680 12418 12418 0.038512666659471506 EIGALYLAA 9 Unmodified _EIGALYLAA_ 0 0 0 REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4 REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.758018 919.501483 -0.043419 -2.0006E-05 0.45416 0.00020926 0.41074 0.00018925 460.7581299881701 97.035 0.62032 92.937 92.669 93.289 -4.0978 -0.086919 9.5856E-05 NaN 36.044 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1605900 + 12169 15231 7677 7680 0.038512666659471506 EIGLRCRTYY 10 Unmodified _EIGLRCRTYY_ 0 0 0 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2381591796875 3 425.216774 1272.62849 NaN NaN NaN NaN NaN NaN NaN 111.03 1 106.8 106.3 107.3 -4.2289 0 0 0 0.22588 1 21367 21367 3.3196 0.58445 1 12170 4260 7678 7681 12419 12419 0.0030824454865978623 EIGSLRSL 8 Unmodified _EIGSLRSL_ 0 0 0 ENST00000581694.1_1_18:19750894-19750951:+|nuORF ENST00000581694.1_1_18:19750894-19750951:+|nuORF ENST00000581694.1_1_18:19750894-19750951:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23590087890625 2 437.753267 873.491981 -0.080158 -3.5089E-05 0.22544 9.8687E-05 0.14528 6.3597E-05 437.75332870794676 63.658 0.55975 60.66 60.35 60.91 -2.9975 26 15 2 0 0 0 0.50973 1 12350 12350 40.449 8.3316 1 1754400 12171 11506 7679 7682 12420 12420 0.050174983804254225 EIGSLRSL 8 Unmodified _EIGSLRSL_ 0 0 0 ENST00000581694.1_1_18:19750894-19750951:+|nuORF ENST00000581694.1_1_18:19750894-19750951:+|nuORF ENST00000581694.1_1_18:19750894-19750951:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 437.753267 873.491981 0.15087 6.6045E-05 0.16406 7.1817E-05 0.31493 0.00013786 437.7532517536051 64.115 0.49352 60.699 60.421 60.915 -3.4158 0.019455 -2.6897E-05 NaN 40.449 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 941560 12172 11506 7679 7682 0.050174983804254225 EIHGLFIPLL 10 Unmodified _EIHGLFIPLL_ 0 0 0 REV__ENST00000390288.6_1_12:56865273-56865705:-|nuORF REV__ENST00000390288.6_1_12:56865273-56865705:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3179321289062 2 576.344792 1150.67503 NaN NaN NaN NaN NaN NaN NaN 113.81 1 109.26 108.76 109.76 -4.555 0 0 0 0.22588 1 21848 21848 10.824 0 1 + 12173 21197 7680 7683 12421 12421 0.1057205244223951 EIHKPWHLYWR 11 Unmodified _EIHKPWHLYWR_ 0 0 0 ENST00000508037.1_1_5:111788606-111788681:-|nuORF ENST00000508037.1_1_5:111788606-111788681:-|nuORF ENST00000508037.1_1_5:111788606-111788681:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2633666992188 3 522.277244 1563.8099 NaN NaN NaN NaN NaN NaN NaN 24.777 1 23.129 22.629 23.629 -1.6482 0 0 0 0.22632 1 4327 4327 0.50596 0 1 12174 10707 7681 7684 12422 12422 0.05054925636682128 EIHQRWAGP 9 Unmodified _EIHQRWAGP_ 0 0 0 ENST00000312210.9_1_1:150979191-150979251:-|nuORF ENST00000312210.9_1_1:150979191-150979251:-|nuORF ENST00000312210.9_1_1:150979191-150979251:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7840576171875 2 547.280515 1092.54648 -0.18034 -9.8696E-05 -0.67949 -0.00037187 -0.85983 -0.00047057 547.2800795155218 110.31 1.3152 105.93 105.21 106.52 -4.3776 128 37 5 0 0 0 0.44932 1 21631 21631 22.736 2.2827 1 89266000 12175 8657 7682 7685 12423 12423 0.003905102518729109 EIHSGHFAF 9 Unmodified _EIHSGHFAF_ 0 0 0 REV__nc|ENSG00000137817|Q2NL67-2|PARP6 REV__nc|ENSG00000137817|Q2NL67-2|PARP6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2572631835938 2 522.748516 1043.48248 -0.58171 -0.00030409 0.89952 0.00047022 0.31781 0.00016614 523.250739687303 113.34 0.59442 108.82 108.43 109.03 -4.5259 31 16 3 0 0 0 0.84208 1 21700 21700 7.2892 6.7645 1 2247100 + 12176 16413 7683 7686 12424 12424 -0.037522699050896335 EIIESTKIY 9 Unmodified _EIIESTKIY_ 0 0 0 tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1 tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1 tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7713623046875 2 548.300247 1094.58594 0.2288 0.00012545 -0.592 -0.0003246 -0.36321 -0.00019915 548.2997596550049 127.46 0.98896 122.67 122.27 123.26 -4.7958 80 24 4 0 0 0 0.62102 1 24569 24569 11.64 0 1 52297000 12177 25915 7684 7687 12425 12425 0.042431726920540314 EIKANVRRKRY 11 Unmodified _EIKANVRRKRY_ 0 0 0 ENSG00000157227|ENST00000311852|MMP14;ENST00000547596.1_1_14:23310843-23311245:+|nuORF ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 716.8578491210938 2 716.928409 1431.84226 NaN NaN NaN NaN NaN NaN NaN 168.98 1 164.19 163.69 164.69 -4.7898 0 0 0 0.22632 1 34195 34195 0.0059557 0.0053913 1 12178 5124 7685 7688 12426 12426 0.14361713039693313 EIKDKVEKY 9 Unmodified _EIKDKVEKY_ 0 0 0 REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1 REV__tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.318359375 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 88.385 1 84.592 84.092 85.092 -3.7926 0 0 0 0.23508 1 17289 17289 7.9102 0 1 + 12179 25042 7686 7689 12427 12427 0.05410263957674033 EIKDREIY 8 Unmodified _EIKDREIY_ 0 0 0 tr|U7T1Z3|U7T1Z3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00695PE=4SV=1 tr|U7T1Z3|U7T1Z3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00695PE=4SV=1 tr|U7T1Z3|U7T1Z3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00695PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2828369140625 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 114.2 1 109.73 109.23 110.23 -4.4726 0 0 0 0.21039 1 22503 22503 16.942 1.0951 1 12180 26334 7687 7690 12428 12428 0.020531352350417365 EIKEEIAS 8 Unmodified _EIKEEIAS_ 0 0 0 ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2442626953125 2 459.742565 917.470577 0.21613 9.9365E-05 0.042501 1.9539E-05 0.25863 0.0001189 459.74250559869716 113.76 0.95047 113.76 113.34 114.29 0 72 26 4 0 0 0 0.087478 1 22349 22349 78.149 3.7266 1 23098000 12181 2228 7688 7691 12429 12429 0.008540685610455512 EIKEEIAS 8 Unmodified _EIKEEIAS_ 0 0 0 ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2440185546875 2 459.742565 917.470577 0.43051 0.00019792 -0.16776 -7.7127E-05 0.26274 0.00012079 459.7424273940338 118.14 0.96581 113.73 113.24 114.21 -4.4088 79 26 4 0 0 0 0.14223 1 22664 22664 54.774 3.9185 1 24466000 12182 2228 7688 7691 12430 12430 0.008540685610455512 EIKEGIQY 8 Unmodified _EIKEGIQY_ 0 0 0 ENSG00000172482|ENST00000307503|AGXT ENSG00000172482|ENST00000307503|AGXT ENSG00000172482|ENST00000307503|AGXT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2584228515625 2 490.258382 978.502212 0.14743 7.2278E-05 -1.0595 -0.00051941 -0.91204 -0.00044713 490.25830794704655 19.051 1.2407 19.051 18.687 19.928 0 83 35 4 0 0 0 8448 1 3118 3118 23.722 0 1 45589000 12183 6227 7689 7692 12431 12431 0.012100613149982564 EIKEYRKAEDI 11 Unmodified _EIKEYRKAEDI_ 0 0 0 tr|U7T1T4|U7T1T4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00570PE=4SV=1 tr|U7T1T4|U7T1T4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00570PE=4SV=1 tr|U7T1T4|U7T1T4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00570PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24822998046875 3 465.248908 1392.72489 NaN NaN NaN NaN NaN NaN NaN 92.084 1 92.084 91.584 92.584 0 0 0 0 0.22632 1 18002 18002 0.172 0 1 12184 26329 7690 7693 12432 12432 0.044240905895549076 EIKEYRKAEDI 11 Unmodified _EIKEYRKAEDI_ 0 0 0 tr|U7T1T4|U7T1T4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00570PE=4SV=1 tr|U7T1T4|U7T1T4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00570PE=4SV=1 tr|U7T1T4|U7T1T4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00570PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2491455078125 3 465.248908 1392.72489 -0.0078886 -3.6702E-06 -0.29247 -0.00013607 -0.30036 -0.00013974 465.24871159652224 106.37 0.62028 102 101.65 102.27 -4.3764 29 17 2 0 0 0 0.78332 1 20451 20451 5.8681 1.1522 1 2528900 12185 26329 7690 7693 12433 12433 0.044240905895549076 EIKFKNWEYLN 11 Unmodified _EIKFKNWEYLN_ 0 0 0 ENST00000414296.2_1_7:29736649-29749689:+|nuORF ENST00000414296.2_1_7:29736649-29749689:+|nuORF ENST00000414296.2_1_7:29736649-29749689:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.384765625 2 742.382634 1482.75072 NaN NaN NaN NaN NaN NaN NaN 173.53 1 173.53 173.03 174.03 0 0 0 0 0.23087 1 35888 35888 7.609 2.3121 1 12186 9599 7691 7694 12434 12434 0.028649848318991644 EIKKLTEQY 9 Unmodified _EIKKLTEQY_ 0 0 0 REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3159790039062 2 576.318971 1150.62339 0.58359 0.00033633 -0.3736 -0.00021531 0.20999 0.00012102 576.3187256020268 77.056 0.80576 77.056 76.621 77.427 0 53 19 3 0 0 0 0.28819 1 14930 14930 32.305 10.769 1 12276000 + 12187 17822 7692 7695 12435 12435 0.05410263957674033 EIKKLTEQY 9 Unmodified _EIKKLTEQY_ 0 0 0 REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3197021484375 2 576.318971 1150.62339 0.038965 2.2456E-05 0.28321 0.00016322 0.32218 0.00018568 576.3191378359361 80.636 0.84103 77.079 76.567 77.408 -3.557 62 23 4 0 0 0 0.2219 2 15709 15709;15795 36.127 6.2864 1 15006000 + 12188 17822 7692 7695 12436;12437 12436 0.05410263957674033 EIKKLTEQY 9 Unmodified _EIKKLTEQY_ 0 0 0 REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3195190429688 2 576.318971 1150.62339 0.10888 6.2751E-05 0.080767 4.6547E-05 0.18965 0.0001093 576.3190301527702 80.982 0.77621 77.143 76.767 77.543 -3.8392 64 21 4 0 0 0 0.28246 2 15332 15332;15336 25.399 2.3658 1 13014000 + 12189 17822 7692 7695 12438;12439 12438 0.05410263957674033 EIKLKSNSY 9 Unmodified _EIKLKSNSY_ 0 0 0 REV__tr|U7SQY2|U7SQY2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01627PE=4SV=1 REV__tr|U7SQY2|U7SQY2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01627PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2823486328125 2 541.298039 1080.58152 NaN NaN NaN NaN NaN NaN NaN 38.58 1 36.031 35.531 36.531 -2.5491 0 0 0 0.23508 1 7156 7156 10.824 0 1 + 12190 25023 7693 7696 12440 12440 0.04445708269145143 EIKQEGDTF 9 Unmodified _EIKQEGDTF_ 0 0 0 ENSG00000143320|ENST00000368222|CRABP2 ENSG00000143320|ENST00000368222|CRABP2 ENSG00000143320|ENST00000368222|CRABP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.284423828125 2 533.756204 1065.49785 0.022575 1.2049E-05 -0.043815 -2.3387E-05 -0.021241 -1.1337E-05 533.7562016901235 86.737 0.70847 83.01 82.619 83.328 -3.727 39 17 3 0 0 0 0.58699 1 17008 17008 25.399 6.1423 1 7607800 12191 4473 7694 7697 12441 12441 -0.03227447898552782 EIKQRRKE 8 Unmodified _EIKQRRKE_ 0 0 0 REV__ENSG00000131871|ENST00000526049|SELENOS REV__ENSG00000131871|ENST00000526049|SELENOS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.783203125 2 543.822547 1085.63054 NaN NaN NaN NaN NaN NaN NaN 163.84 1 158.77 158.27 159.27 -5.0648 0 0 0 0.21486 1 31906 31906 7.2892 0.18751 1 + 12192 16092 7695 7698 12442 12442 0.09115041348763953 EIKRHLFFCKY 11 Unmodified _EIKRHLFFCKY_ 0 0 0 RPS6KA6|p.A331Cfs*4|1|0.53|ENSG00000072133|chrX:84116246-84116247|-/A|frameshift_variant RPS6KA6|p.A331Cfs*4|1|0.53|ENSG00000072133|chrX:84116246-84116247|-/A|frameshift_variant RPS6KA6|p.A331Cfs*4|1|0.53|ENSG00000072133|chrX:84116246-84116247|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3981323242188 2 742.397564 1482.78058 NaN NaN NaN NaN NaN NaN NaN 103.78 1 103.78 103.28 104.28 0 0 0 0 0.23264 1 20395 20395 6.2058 0.47393 1 12193 25624 7696 7699 12443 12443 0.05849645296211747 EIKSGKIVPD 10 Unmodified _EIKSGKIVPD_ 0 0 0 tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1 tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1 tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.794677734375 2 543.313689 1084.61282 0.13861 7.5309E-05 -2.7268 -0.0014815 -2.5882 -0.0014062 543.8114128853705 96.607 0.10136 92.372 92.303 92.405 -4.2348 4 2 2 0 0 0 0.42569 1 18431 18431 29.082 6.3453 1 379180 12194 26392 7697 7700 12444 12444 0.07390281303241863 EIKYRKLKQVE 11 Unmodified _EIKYRKLKQVE_ 0 0 0 REV__nc|ENSG00000116750|Q9Y5K5-2|UCHL5 REV__nc|ENSG00000116750|Q9Y5K5-2|UCHL5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7272644042969 3 478.620676 1432.8402 NaN NaN NaN NaN NaN NaN NaN 143.59 1 138.94 138.44 139.44 -4.656 0 0 0 0.23698 1 28403 28403 1.2148 0 1 + 12195 15497 7698 7701 12445 12445 0.14109239511208216 EILDMFLV 8 Unmodified _EILDMFLV_ 0 0 0 REV__ENSG00000157483|ENST00000288235|MYO1E REV__ENSG00000157483|ENST00000288235|MYO1E MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26458740234375 2 490.262079 978.509605 NaN NaN NaN NaN NaN NaN NaN 92.262 1 88.168 87.668 88.668 -4.0946 0 0 0 0.18898 1 17575 17575 28.487 2.2187 1 + 12196 17298 7699 7702 12446 12446 0.019490775910867342 EILFHLLTT 9 Unmodified _EILFHLLTT_ 0 0 0 REV__DIAPH3|p.V887I|1|0.16|ENSG00000139734|chr13:59861485-59861485|C/T|missense_variant REV__DIAPH3|p.V887I|1|0.16|ENSG00000139734|chr13:59861485-59861485|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.775146484375 2 543.813325 1085.6121 0.34239 0.00018619 3.9216 0.0021326 4.264 0.0023188 543.8152499231558 157.89 0.13948 157.89 157.8 157.94 0 5 3 2 0 0 0 0.35443 1 31699 31699 28.487 9.2299 1 1605300 + 12197 13681 7700 7703 12447 12447 0.07271486654190085 EILFHLLTT 9 Unmodified _EILFHLLTT_ 0 0 0 REV__DIAPH3|p.V887I|1|0.16|ENSG00000139734|chr13:59861485-59861485|C/T|missense_variant REV__DIAPH3|p.V887I|1|0.16|ENSG00000139734|chr13:59861485-59861485|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.813325 1085.6121 0.34239 0.00018619 3.9216 0.0021326 4.264 0.0023188 543.8152499231558 157.89 0.13948 157.89 157.8 157.94 0 0 0 NaN 28.487 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1605300 + 12198 13681 7700 7703 0.07271486654190085 EILGPDGNT 9 Unmodified _EILGPDGNT_ 0 0 0 ENSG00000107165|ENST00000388918|TYRP1 ENSG00000107165|ENST00000388918|TYRP1 ENSG00000107165|ENST00000388918|TYRP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2294006347656 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 128.83 1 124.09 123.59 124.59 -4.7408 0 0 0 0.23508 1 24789 24789 10.824 1.4765 1 12199 2415 7701 7704 12448 12448 -0.026113886158100286 EILGTERDY 9 Unmodified _EILGTERDY_ 0 0 0 ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1;PREX1|p.L957Pfs*50|1|0.25|ENSG00000124126|chr20:48650154-48650155|-/G|frameshift_variant ENSG00000124126|ENST00000371941|PREX1 ENSG00000124126|ENST00000371941|PREX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7692260742188 2 548.269478 1094.5244 0.12908 7.0769E-05 -0.62564 -0.00034302 -0.49656 -0.00027225 548.2711245636502 47.355 0.45256 44.486 44.182 44.635 -2.869 18 12 2 0 0 0 0.8319 1 8927 8927 4.3292 0 1 2181400 12200 3291 7702 7705 12449 12449 -0.019077590072356543 EILNRVQKA 9 Unmodified _EILNRVQKA_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.548828125 3 357.548741 1069.62439 -0.51348 -0.00018359 0.48728 0.00017423 -0.026201 -9.368E-06 357.54881451805755 76.456 0.66376 72.822 72.477 73.141 -3.6337 24 18 2 0 0 0 0.68708 1 14519 14519 7.1017 0.47135 1 808370 12201 899 7703 7706 12450 12450 0.09236523117237994 EILRELTH 8 Unmodified _EILRELTH_ 0 0 0 AFF2|p.M364L|1|0.42|ENSG00000155966|chrX:148837650-148837650|A/T|missense_variant AFF2|p.M364L|1|0.42|ENSG00000155966|chrX:148837650-148837650|A/T|missense_variant AFF2|p.M364L|1|0.42|ENSG00000155966|chrX:148837650-148837650|A/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.1980895996094 3 337.525825 1009.55564 0.27267 9.2034E-05 -0.5177 -0.00017474 -0.24503 -8.2704E-05 337.5257550785636 32.126 0.45406 30.099 29.833 30.287 -2.0264 20 12 2 0 0 0 0.89848 1 5521 5521 0.12286 0 1 621480 12202 89 7704 7707 12451 12451 0.05124858817509903 EILRELTH 8 Unmodified _EILRELTH_ 0 0 0 AFF2|p.M364L|1|0.42|ENSG00000155966|chrX:148837650-148837650|A/T|missense_variant AFF2|p.M364L|1|0.42|ENSG00000155966|chrX:148837650-148837650|A/T|missense_variant AFF2|p.M364L|1|0.42|ENSG00000155966|chrX:148837650-148837650|A/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 337.525825 1009.55564 -0.08942 -3.0181E-05 0.23657 7.985E-05 0.14716 4.9669E-05 337.5258869710343 32.321 0.39088 30.091 29.833 30.224 -2.2305 0.010923 0.00020288 NaN 0.12286 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 781530 12203 89 7704 7707 0.05124858817509903 EILRELTH 8 Unmodified _EILRELTH_ 0 0 0 AFF2|p.M364L|1|0.42|ENSG00000155966|chrX:148837650-148837650|A/T|missense_variant AFF2|p.M364L|1|0.42|ENSG00000155966|chrX:148837650-148837650|A/T|missense_variant AFF2|p.M364L|1|0.42|ENSG00000155966|chrX:148837650-148837650|A/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 337.525825 1009.55564 -0.2247 -7.5841E-05 0.096007 3.2405E-05 -0.12869 -4.3436E-05 337.5259326010311 32.198 0.41639 30.049 29.864 30.281 -2.1483 -0.030545 6.0546E-05 NaN 0.12286 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 633200 12204 89 7704 7707 0.05124858817509903 EILRGEEY 8 Unmodified _EILRGEEY_ 0 0 0 ENSG00000067606|ENST00000378567|PRKCZ;nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENST00000505322.5_1_1:2100378-2116445:+|nuORF ENSG00000067606|ENST00000378567|PRKCZ;ENST00000505322.5_1_1:2100378-2116445:+|nuORF ENSG00000067606|ENST00000378567|PRKCZ MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.8392639160156 3 336.838068 1007.49238 -0.39868 -0.00013429 0.26803 9.0282E-05 -0.13065 -4.4009E-05 336.8382100621116 21.653 0.68705 21.653 21.33 22.017 0 66 19 5 0 0 0 8448 1 3679 3679 0.12286 0 1 1739000 12205 1391;10671 7705 7708 12452 12452 -0.011071266903741162 EILRGEEY 8 Unmodified _EILRGEEY_ 0 0 0 ENSG00000067606|ENST00000378567|PRKCZ;nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENST00000505322.5_1_1:2100378-2116445:+|nuORF ENSG00000067606|ENST00000378567|PRKCZ;ENST00000505322.5_1_1:2100378-2116445:+|nuORF ENSG00000067606|ENST00000378567|PRKCZ MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 336.838068 1007.49238 -0.39868 -0.00013429 0.26803 9.0282E-05 -0.13065 -4.4009E-05 336.8382100621116 21.653 0.68705 21.653 21.33 22.017 0 0.036378 -0.00011108 NaN 0.12286 66 19 5 NaN NaN NaN NaN 0 NaN NaN 0 1739000 12206 1391;10671 7705 7708 -0.011071266903741162 EILRGEEY 8 Unmodified _EILRGEEY_ 0 0 0 ENSG00000067606|ENST00000378567|PRKCZ;nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENST00000505322.5_1_1:2100378-2116445:+|nuORF ENSG00000067606|ENST00000378567|PRKCZ;ENST00000505322.5_1_1:2100378-2116445:+|nuORF ENSG00000067606|ENST00000378567|PRKCZ MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 336.838068 1007.49238 -0.071646 -2.4133E-05 0.023026 7.7561E-06 -0.04862 -1.6377E-05 336.838096103854 23.104 0.84554 21.651 21.19 22.035 -1.4535 0.034021 -0.00035865 NaN 0.12286 83 23 5 NaN NaN NaN NaN 0 NaN NaN 0 1381700 12207 1391;10671 7705 7708 -0.011071266903741162 EILRGEEY 8 Unmodified _EILRGEEY_ 0 0 0 ENSG00000067606|ENST00000378567|PRKCZ;nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENST00000505322.5_1_1:2100378-2116445:+|nuORF ENSG00000067606|ENST00000378567|PRKCZ;ENST00000505322.5_1_1:2100378-2116445:+|nuORF ENSG00000067606|ENST00000378567|PRKCZ MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 336.838068 1007.49238 -1.1221 -0.00037797 0.86269 0.00029059 -0.25942 -8.7384E-05 336.8384520514945 23.335 0.8957 21.546 21.189 22.084 -1.7886 -0.070399 0.00048984 NaN 0.12286 65 25 4 NaN NaN NaN NaN 0 NaN NaN 0 1086800 12208 1391;10671 7705 7708 -0.011071266903741162 EILRPCNL 8 Unmodified _EILRPCNL_ 0 0 0 REV__nc|ENSG00000164616|Q9UKT6|FBXL21P REV__nc|ENSG00000164616|Q9UKT6|FBXL21P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7269592285156 2 479.262945 956.511337 0.032057 1.5364E-05 2.2327 0.0010701 2.2648 0.0010854 479.26335047041636 115.25 1.3786 110.78 110.43 111.81 -4.4726 56 39 2 0 0 0 0.93477 1 22907 22907 12.532 6.3258 1 2811400 + 12209 24141 7706 7709 12453 12453 0.03134131399679063 EILRPCNL 8 Unmodified _EILRPCNL_ 0 0 0 REV__nc|ENSG00000164616|Q9UKT6|FBXL21P REV__nc|ENSG00000164616|Q9UKT6|FBXL21P MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.262945 956.511337 0.23611 0.00011316 5.0629 0.0024265 5.299 0.0025396 479.2647684291102 115.53 0.56313 110.96 110.6 111.16 -4.5746 0.089255 0.0016926 NaN 4.3292 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2346900 + 12210 24141 7706 7709 0.03134131399679063 EILVQIFGLLV 11 Unmodified _EILVQIFGLLV_ 0 0 0 ENSG00000182325|ENST00000331890|FBXL6;ENST00000530687.1_1_8:145581286-145581759:-|nuORF;ENST00000530142.5_1_8:145581690-145582740:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6 ENSG00000182325|ENST00000331890|FBXL6 ENSG00000182325|ENST00000331890|FBXL6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7597045898438 2 622.386657 1242.75876 NaN NaN NaN NaN NaN NaN NaN 168.89 1 168.89 168.39 169.39 0 0 0 0 0.22632 1 34627 34627 0.03141 0.0052036 1 12211 6783 7707 7710 12454 12454 0.1470916381929328 EILYRLKIPPL 11 Unmodified _EILYRLKIPPL_ 0 0 0 NEIL1|p.F191Lfs*20|1|0.38|ENSG00000140398|chr15:75352333-75352333|C/-|frameshift_variant NEIL1|p.F191Lfs*20|1|0.38|ENSG00000140398|chr15:75352333-75352333|C/-|frameshift_variant NEIL1|p.F191Lfs*20|1|0.38|ENSG00000140398|chr15:75352333-75352333|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 452.27978515625 3 452.286746 1353.83841 NaN NaN NaN NaN NaN NaN NaN 98.879 1 94.746 94.246 95.246 -4.1326 0 0 0 0.22632 1 19418 19418 0.03141 0 1 12212 12681 7708 7711 12455 12455 0.17564230493280775 EIMFWNLMP 9 Unmodified _EIMFWNLMP_ 0 0 0 STAT5B|p.R638I|1|0.37|ENSG00000173757|chr17:42207722-42207722|C/A|missense_variant STAT5B|p.R638I|1|0.37|ENSG00000173757|chr17:42207722-42207722|C/A|missense_variant STAT5B|p.R638I|1|0.37|ENSG00000173757|chr17:42207722-42207722|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2567138671875 2 590.780113 1179.54567 0.6306 0.00037254 2.3908 0.0014124 3.0214 0.001785 590.7814468586906 98.976 0.65926 94.707 94.441 95.101 -4.2692 23 18 2 0 0 0 0.82765 1 18885 18885 9.3831 3.1773 1 1610700 12213 25796 7709 7712 12456 12456 -0.0369178850373828 EIMQRYKKLQF 11 Unmodified _EIMQRYKKLQF_ 0 0 0 ENSG00000151692|ENST00000320892|RNF144A ENSG00000151692|ENST00000320892|RNF144A ENSG00000151692|ENST00000320892|RNF144A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3717041015625 2 742.408129 1482.8017 NaN NaN NaN NaN NaN NaN NaN 170.61 1 170.61 170.11 171.11 0 0 0 0 0.23324 1 35090 35090 5.7319 0 1 12214 4882 7710 7713 12457 12457 0.07961610605048008 EIMRLTRDIN 10 Unmodified _EIMRLTRDIN_ 0 0 0 tr|U7T534|U7T534_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00290PE=4SV=1 tr|U7T534|U7T534_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00290PE=4SV=1 tr|U7T534|U7T534_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00290PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7691040039062 2 630.840079 1259.66561 NaN NaN NaN NaN NaN NaN NaN 154.88 1 149.63 149.13 150.13 -5.2526 0 0 0 0.22588 1 30030 30030 7.1017 0.37856 1 12215 26448 7711 7714 12458 12458 0.04615916094417116 EIMRVVRY 8 Unmodified _EIMRVVRY_ 0 0 0 KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant;ENSG00000184445|ENST00000333479|KNTC1 KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2745361328125 2 533.297319 1064.58008 NaN NaN NaN NaN NaN NaN NaN 145.01 1 140.34 139.84 140.84 -4.6694 0 0 0 0.21486 1 28736 28736 7.9102 0 1 12216 6910 7712 7715 12459 12459 0.05037795699399794 EINERNKSY 9 Unmodified _EINERNKSY_ 0 0 0 REV__tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1 REV__tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3358154296875 2 576.785827 1151.5571 -0.020536 -1.1845E-05 3.5387 0.0020411 3.5182 0.0020292 576.7869690874828 63.717 0.55753 63.717 63.401 63.959 0 29 15 3 0 0 0 0.85111 1 12262 12262 6.7232 4.6634 1 1760200 + 12217 25411 7713 7716 12460 12460 -0.012615518843858808 EINIYRQTL 9 Unmodified _EINIYRQTL_ 0 0 0 REV__tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1 REV__tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3182983398438 2 575.316763 1148.61897 0.059736 3.4367E-05 -1.169 -0.00067252 -1.1092 -0.00063816 575.3160285987526 112.27 0.66361 107.74 107.38 108.04 -4.5259 43 18 4 0 0 0 0.25384 1 21558 21558 2.6312 0 1 9773100 + 12218 24969 7714 7717 12461 12461 0.050607995347718315 EINKLPDPLI 10 Unmodified _EINKLPDPLI_ 0 0 0 REV__tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1 REV__tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3361206054688 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 63.305 1 63.305 62.805 63.805 0 0 0 0 0.22583 1 12170 12170 13.906 3.0821 1 + 12219 25212 7715 7718 12462 12462 0.09047140854386271 EINKRAAAENE 11 Unmodified _EINKRAAAENE_ 0 0 0 CON__Q8BGZ7 CON__Q8BGZ7 CON__Q8BGZ7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7676391601562 2 622.815116 1243.61568 NaN NaN NaN NaN NaN NaN NaN 172.04 1 167.25 166.75 167.75 -4.7898 0 0 0 0.22595 1 35022 35022 11.495 2.1116 1 + 12220 704 7716 7719 12463 12463 0.0036150469009044173 EINSIKKYSKV 11 Unmodified _EINSIKKYSKV_ 0 0 0 tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1 tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1 tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22796630859375 3 436.922244 1307.7449 0.21081 9.2106E-05 -1.087 -0.00047492 -0.87616 -0.00038282 437.2558652865725 28.196 0.44679 28.196 27.905 28.352 0 15 12 2 0 0 0 0.66087 1 5001 5001 1.4551 1.2831 1 686780 12221 26504 7717 7720 12464 12464 0.10333886320154306 EINYSAIHP 9 Unmodified _EINYSAIHP_ 0 0 0 ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4|p.P1123Lfs*37|1|0.47|ENSG00000132470|chr17:75750158-75750158|C/-|frameshift_variant;ENST00000584374.1_1_17:73727904-73735976:+|nuORF;ITGB4|p.E666Rfs*103|1|0.29|ENSG00000132470|chr17:75737326-75737326|G/-|frameshift_variant;nc|ENSG00000132470|P16144-5|ITGB4 ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2616577148438 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 60.937 1 60.937 60.437 61.437 0 0 0 0 0.20628 1 11689 11689 21.747 1.293 1 12222 3731 7718 7721 12465 12465 -0.011194204534831442 EIPANLPEGIV 11 Unmodified _EIPANLPEGIV_ 0 0 0 ENST00000518140.5_1_5:168199753-168727722:-|nuORF;SLIT3|p.P1113Hfs*108|1|0.38|ENSG00000184347|chr5:168685904-168685904|G/-|frameshift_variant;nc|ENSG00000184347|O75094-2|SLIT3;nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3 ENST00000518140.5_1_5:168199753-168727722:-|nuORF ENST00000518140.5_1_5:168199753-168727722:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3195190429688 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 83.401 1 79.527 79.027 80.027 -3.8736 0 0 0 0.23018 1 15840 15840 8.1555 1.9497 1 12223 6906 7719 7722 12466 12466 0.05410263957674033 EIPNRIPNL 9 Unmodified _EIPNRIPNL_ 0 0 0 REV__ENST00000546616.1_1_14:105609034-105613077:-|nuORF REV__ENST00000546616.1_1_14:105609034-105613077:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2837524414062 2 533.306198 1064.59784 NaN NaN NaN NaN NaN NaN NaN 114.57 1 110.01 109.51 110.51 -4.555 0 0 0 0.23508 1 21996 21996 11.64 0.81637 1 + 12224 18922 7720 7723 12467 12467 0.06812834225888764 EIQKELLDY 9 Unmodified _EIQKELLDY_ 0 0 0 PSAT1|p.L75Sfs*26|1|0.39|ENSG00000135069|chr9:78304760-78304761|-/T|frameshift_variant;nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1 PSAT1|p.L75Sfs*26|1|0.39|ENSG00000135069|chr9:78304760-78304761|-/T|frameshift_variant PSAT1|p.L75Sfs*26|1|0.39|ENSG00000135069|chr9:78304760-78304761|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3377685546875 2 575.803154 1149.59175 0.68396 0.00039383 0.49324 0.00028401 1.1772 0.00067784 575.8035302567974 102.74 0.79601 102.74 102.24 103.03 0 38 22 3 0 0 0 0.010502 1 20211 20211 103.42 30.451 1 3505000 12225 3897 7721 7724 12468 12468 0.022942712037320234 EIQKELLDY 9 Unmodified _EIQKELLDY_ 0 0 0 PSAT1|p.L75Sfs*26|1|0.39|ENSG00000135069|chr9:78304760-78304761|-/T|frameshift_variant;nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1 PSAT1|p.L75Sfs*26|1|0.39|ENSG00000135069|chr9:78304760-78304761|-/T|frameshift_variant PSAT1|p.L75Sfs*26|1|0.39|ENSG00000135069|chr9:78304760-78304761|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3290405273438 2 575.803154 1149.59175 -0.41054 -0.00023639 0.67763 0.00039018 0.26709 0.00015379 575.8034921558572 106.97 0.77055 102.68 102.3 103.07 -4.2856 38 21 2 0 0 0 2.7182E-05 1 21104 21104 133.05 33.297 1 3383000 12226 3897 7721 7724 12469 12469 0.022942712037320234 EIQKELLDY 9 Unmodified _EIQKELLDY_ 0 0 0 PSAT1|p.L75Sfs*26|1|0.39|ENSG00000135069|chr9:78304760-78304761|-/T|frameshift_variant;nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1 PSAT1|p.L75Sfs*26|1|0.39|ENSG00000135069|chr9:78304760-78304761|-/T|frameshift_variant PSAT1|p.L75Sfs*26|1|0.39|ENSG00000135069|chr9:78304760-78304761|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3223876953125 2 575.803154 1149.59175 0.076664 4.4144E-05 0.044741 2.5762E-05 0.12141 6.9906E-05 575.8030689500769 107.07 0.65732 102.65 102.33 102.99 -4.4121 30 18 2 0 0 0 4.8487E-06 2 20567 20567;20578 140.63 33.693 1 2527400 12227 3897 7721 7724 12470;12471 12470 0.022942712037320234 EIQKELLDY 9 Unmodified _EIQKELLDY_ 0 0 0 PSAT1|p.L75Sfs*26|1|0.39|ENSG00000135069|chr9:78304760-78304761|-/T|frameshift_variant;nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1 PSAT1|p.L75Sfs*26|1|0.39|ENSG00000135069|chr9:78304760-78304761|-/T|frameshift_variant PSAT1|p.L75Sfs*26|1|0.39|ENSG00000135069|chr9:78304760-78304761|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3383178710938 2 575.803154 1149.59175 0.72343 0.00041655 -0.43374 -0.00024975 0.28969 0.00016681 575.8028143453827 106.84 0.65814 102.73 102.34 102.99 -4.1168 28 18 2 0 0 0 0.031786 1 20504 20504 79.596 15.636 1 1833000 12228 3897 7721 7724 12472 12472 0.022942712037320234 EIQNQVLNH 9 Unmodified _EIQNQVLNH_ 0 0 0 ENST00000498707.5_1_3:64501757-64501913:-|nuORF ENST00000498707.5_1_3:64501757-64501913:-|nuORF ENST00000498707.5_1_3:64501757-64501913:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7794189453125 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 29.423 1 27.467 26.967 27.967 -1.9561 0 0 0 0.20628 1 5289 5289 21.747 1.293 1 12229 10607 7722 7725 12473 12473 0.008587693238041538 EIQTAYSKF 9 Unmodified _EIQTAYSKF_ 0 0 0 ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-3|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.794189453125 2 543.776939 1085.53933 0.32211 0.00017516 -3.7113 -0.0020181 -3.3892 -0.001843 544.2748481676981 102.47 1.2366 98.149 97.573 98.809 -4.3208 68 35 3 0 0 0 0.48644 1 19503 19503 20.454 3.3407 1 4719700 12230 4834 7723 7726 12474 12474 -2.2671392343909247E-05 EIRAQYESLA 10 Unmodified _EIRAQYESLA_ 0 0 0 ENSG00000148798|ENST00000369849|INA ENSG00000148798|ENST00000369849|INA ENSG00000148798|ENST00000369849|INA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2620849609375 2 590.303852 1178.59315 0.57761 0.00034096 -0.41981 -0.00024782 0.15779 9.3146E-05 590.3035673063403 49.604 0.34843 49.604 49.404 49.753 0 21 9 3 0 0 0 0.57807 1 9382 9382 20.415 2.2682 1 1538000 12231 4760 7724 7727 12475 12475 0.010999052924944408 EIRAQYESLA 10 Unmodified _EIRAQYESLA_ 0 0 0 ENSG00000148798|ENST00000369849|INA ENSG00000148798|ENST00000369849|INA ENSG00000148798|ENST00000369849|INA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2667846679688 2 590.303852 1178.59315 0.46356 0.00027364 -0.34468 -0.00020347 0.11888 7.0173E-05 590.3034339725542 52.584 0.52074 49.497 49.168 49.689 -3.0876 18 14 2 0 0 0 0.4708 2 9657 9657;9688 26.268 7.895 1 2470600 12232 4760 7724 7727 12476;12477 12476 0.010999052924944408 EIRAQYESLA 10 Unmodified _EIRAQYESLA_ 0 0 0 ENSG00000148798|ENST00000369849|INA ENSG00000148798|ENST00000369849|INA ENSG00000148798|ENST00000369849|INA MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 590.303852 1178.59315 0.27039 0.00015961 -0.10991 -6.4878E-05 0.16048 9.4733E-05 590.3037141853708 52.277 0.35291 49.395 49.273 49.626 -2.8824 -0.085907 0.00011704 NaN 26.268 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2294800 12233 4760 7724 7727 0.010999052924944408 EIRDLLGF 8 Unmodified _EIRDLLGF_ 0 0 0 nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7694396972656 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 126.35 1 126.35 125.85 126.85 0 0 0 0 0.19342 1 24934 24934 26.884 0 1 12234 4586 7725 7728 12478 12478 0.04098071414523474 EIRFLRKEYAF 11 Unmodified _EIRFLRKEYAF_ 0 0 0 REV__FERD3L|p.S138F|1|0.34|ENSG00000146618|chr7:19144950-19144950|G/A|missense_variant REV__FERD3L|p.S138F|1|0.34|ENSG00000146618|chr7:19144950-19144950|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 736.4954833984375 2 736.406444 1470.79833 NaN NaN NaN NaN NaN NaN NaN 169.4 1 164.47 163.97 164.97 -4.9295 0 0 0 0.23379 1 33447 33447 5.2969 0.39987 1 + 12235 23534 7726 7729 12479 12479 0.08176683822716768 EIRRQKKE 8 Unmodified _EIRRQKKE_ 0 0 0 tr|U7SPQ7|U7SPQ7_FUSNUDNAmismatchrepairproteinsmutSfamilydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01865PE=4SV=1 tr|U7SPQ7|U7SPQ7_FUSNUDNAmismatchrepairproteinsmutSfamilydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01865PE=4SV=1 tr|U7SPQ7|U7SPQ7_FUSNUDNAmismatchrepairproteinsmutSfamilydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01865PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7918701171875 2 543.822547 1085.63054 0.34395 0.00018705 2.8298 0.0015389 3.1737 0.0017259 543.826059831192 162.97 0.17377 162.97 162.86 163.04 0 6 4 2 0 0 0 1.0011 1 32816 32816 0.45834 0.057624 1 15053000 12236 26046 7727 7730 12480 12480 0.09115041348763953 EIRTPRTS 8 Unmodified _EIRTPRTS_ 0 0 0 REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 480.2654113769531 2 480.267073 958.519593 NaN NaN NaN NaN NaN NaN NaN 69.453 1 65.916 65.416 66.416 -3.5362 0 0 0 0.22628 1 13076 13076 20.454 19.578 1 + 12237 19033 7728 7731 12481 12481 0.0386740164068442 EIRWTERWLLY 11 Unmodified _EIRWTERWLLY_ 0 0 0 ENST00000537745.5_1_12:131357614-131357677:+|nuORF ENST00000537745.5_1_12:131357614-131357677:+|nuORF ENST00000537745.5_1_12:131357614-131357677:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2625732421875 3 522.280542 1563.8198 NaN NaN NaN NaN NaN NaN NaN 138.98 1 134.13 133.63 134.63 -4.8492 0 0 0 0.22632 1 26791 26791 0.026206 0 1 12238 11042 7729 7732 12482 12482 0.060440688514518115 EISAKGRLLLK 11 Unmodified _EISAKGRLLLK_ 0 0 0 REV__ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant REV__ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 614.4052124023438 2 614.392805 1226.77106 NaN NaN NaN NaN NaN NaN NaN 172.11 1 172.11 171.61 172.61 0 0 0 0 0.23429 1 35512 35512 4.897 0.56777 1 + 12239 13129 7730 7733 12483 12483 0.1667420028234119 EISDEFKVV 9 Unmodified _EISDEFKVV_ 0 0 0 nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1 nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2763671875 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 114.71 1 110.24 109.74 110.74 -4.4726 0 0 0 0.19657 1 22606 22606 4.897 0 1 12240 6743;5173 7731 7734 12484 12484 0.009303131409069465 EISDTELE 8 Unmodified _EISDTELE_ 0 0 0 nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN nc|ENSG00000140694|O95453-4|PARN nc|ENSG00000140694|O95453-4|PARN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.46527099609375 3 312.478317 934.413122 NaN NaN NaN NaN NaN NaN NaN 89.705 1 89.705 89.205 90.205 0 0 0 0 0.23312 1 17520 17520 0.25148 0 1 12241 4321 7732 7735 12485 12485 -0.056708184351919044 EISEVPIE 8 Unmodified _EISEVPIE_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23736572265625 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 130.64 1 126 125.5 126.5 -4.6359 0 0 0 0.18417 1 25743 25743 30.225 0 1 + 12242 19411 7733 7736 12486 12486 -0.0009733381322121204 EISGHQLM 8 Unmodified _EISGHQLM_ 0 0 0 ENSG00000168490|ENST00000454243|PHYHIP ENSG00000168490|ENST00000454243|PHYHIP ENSG00000168490|ENST00000454243|PHYHIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384033203125 2 457.723652 913.432752 0.38623 0.00017679 1.0296 0.00047126 1.4158 0.00064805 457.72398576333376 119.48 0.37821 115.01 114.78 115.16 -4.467 15 10 2 0 0 0 0.96284 1 22997 22997 13.508 4.9146 1 762290 12243 5912 7734 7737 12487 12487 -0.027427209053939805 EISKYQYSY 9 Unmodified _EISKYQYSY_ 0 0 0 tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1 tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1 tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.26611328125 2 590.779679 1179.5448 0.71012 0.00041952 -0.11179 -6.6041E-05 0.59833 0.00035348 590.7794526393695 166.84 0.41582 162.05 161.8 162.22 -4.7898 26 11 3 0 0 0 0.8319 1 33614 33614 1.8442 0 1 153610000 12244 26336 7735 7738 12488 12488 -0.03778588347427103 EISLLTEAS 9 Unmodified _EISLLTEAS_ 0 0 0 ENSG00000102543|ENST00000251108|CDADC1 ENSG00000102543|ENST00000251108|CDADC1 ENSG00000102543|ENST00000251108|CDADC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2536315917969 2 481.755672 961.496792 -0.062027 -2.9882E-05 0.13171 6.3451E-05 0.069682 3.357E-05 481.75576270949284 113.84 0.55639 109.38 109.11 109.67 -4.4539 21 15 2 0 0 0 0.65155 1 22425 22425 21.747 5.8995 1 893210 12245 2134 7736 7739 12489 12489 0.01450337732535445 EISPQPPIY 9 Unmodified _EISPQPPIY_ 0 0 0 REV__KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant REV__KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27197265625 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 83.264 1 79.566 79.066 80.066 -3.6985 0 0 0 0.23508 1 15893 15893 12.532 0 1 + 12246 15705 7737 7740 12490 12490 0.01394634349117041 EISQLKKEIER 11 Unmodified _EISQLKKEIER_ 0 0 0 nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18 nc|ENSG00000122483|Q5T9S5-2|CCDC18 nc|ENSG00000122483|Q5T9S5-2|CCDC18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.237060546875 3 458.264669 1371.77218 NaN NaN NaN NaN NaN NaN NaN 104.41 1 100.35 99.854 100.85 -4.0543 0 0 0 0.22632 1 20077 20077 0.2986 0.18756 1 12247 3224 7738 7741 12491 12491 0.10116369860543273 EISRGQTPKA 10 Unmodified _EISRGQTPKA_ 0 0 0 MTHFD1L|p.I587*|1|0.1|ENSG00000120254|chr6:150956023-150956023|A/-|frameshift_variant;ENSG00000120254|ENST00000367321|MTHFD1L MTHFD1L|p.I587*|1|0.1|ENSG00000120254|chr6:150956023-150956023|A/-|frameshift_variant MTHFD1L|p.I587*|1|0.1|ENSG00000120254|chr6:150956023-150956023|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7964477539062 2 543.798737 1085.58292 NaN NaN NaN NaN NaN NaN NaN 170.42 1 170.42 169.92 170.92 0 0 0 0 0.22588 1 35040 35040 7.609 0.31972 1 12248 3123 7739 7742 12492 12492 0.043553423578941874 EISSGIAHF 9 Unmodified _EISSGIAHF_ 0 0 0 REV__nc|ENSG00000040341|Q9NUL3-7|STAU2 REV__nc|ENSG00000040341|Q9NUL3-7|STAU2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2549743652344 2 480.742899 959.471246 -0.11915 -5.7282E-05 -2.3285 -0.0011194 -2.4476 -0.0011767 480.7418770977577 56.475 0.62115 53.581 53.235 53.856 -2.8944 29 17 2 0 0 0 0.19311 1 10843 10843 37.974 5.6685 1 1743600 + 12249 23934 7740 7743 12493 12493 -0.010110919992371237 EISSILELY 9 Unmodified _EISSILELY_ 0 0 0 REV__ENSG00000163913|ENST00000348417|IFT122 REV__ENSG00000163913|ENST00000348417|IFT122 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2825927734375 2 533.786973 1065.55939 0.12193 6.5085E-05 1.1932 0.00063693 1.3152 0.00070202 533.7872266794556 154.18 0.70886 154.18 153.97 154.68 0 24 19 2 0 0 0 0.65155 1 30896 30896 15.847 0 1 1780000 + 12250 17628 7741 7744 12494 12494 0.029234838007369035 EISSILELY 9 Unmodified _EISSILELY_ 0 0 0 REV__ENSG00000163913|ENST00000348417|IFT122 REV__ENSG00000163913|ENST00000348417|IFT122 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26220703125 2 533.786973 1065.55939 0.49707 0.00026533 0.031303 1.6709E-05 0.52838 0.00028204 533.7868584793574 159.92 0.63226 154.67 154.29 154.93 -5.2526 28 17 3 0 0 0 0.65155 1 31051 31051 15.847 0 1 2413100 + 12251 17628 7741 7744 12495 12495 0.029234838007369035 EISTSSLKVT 10 Unmodified _EISTSSLKVT_ 0 0 0 nc|ENSG00000119844|Q6ULP2-8|AFTPH;nc|ENSG00000119844|Q6ULP2-6|AFTPH;ENSG00000119844|ENST00000409933|AFTPH;nc|ENSG00000119844|Q6ULP2-9|AFTPH;ENST00000498706.5_1_2:64808202-64819166:+|nuORF nc|ENSG00000119844|Q6ULP2-8|AFTPH nc|ENSG00000119844|Q6ULP2-8|AFTPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2844848632812 2 532.795329 1063.5761 0.39766 0.00021187 -3.2211 -0.0017162 -2.8234 -0.0015043 532.7941605687354 70.271 0.1747 66.804 66.673 66.847 -3.467 5 4 2 0 0 0 0.67319 1 13283 13283 13.906 2.2658 1 497320 12252 3103 7742 7745 12496 12496 0.04685984686670963 EITEQILSY 9 Unmodified _EITEQILSY_ 0 0 0 REV__ENSG00000171914|ENST00000636159|TLN2 REV__ENSG00000171914|ENST00000636159|TLN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.781982421875 2 548.282054 1094.54956 0.081694 4.4791E-05 0.39525 0.00021671 0.47695 0.0002615 548.2821988059836 93.85 0.5295 93.85 93.578 94.107 0 28 14 3 0 0 0 0.85111 1 18419 18419 6.7232 2.3939 1 2493000 + 12253 18260 7743 7746 12497 12497 0.006062957953417936 EITGTQPP 8 Unmodified _EITGTQPP_ 0 0 0 MINK1|p.D1112Gfs*17|1|0.14|ENSG00000141503|chr17:4895797-4895798|-/G|frameshift_variant;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;ENSG00000141503|ENST00000355280|MINK1 MINK1|p.D1112Gfs*17|1|0.14|ENSG00000141503|chr17:4895797-4895798|-/G|frameshift_variant MINK1|p.D1112Gfs*17|1|0.14|ENSG00000141503|chr17:4895797-4895798|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3880004882812 1 842.425424 841.418148 0.31624 0.00026641 0.090098 7.5901E-05 0.40634 0.00034231 842.4253127400385 90.233 0.53397 86.373 86.116 86.65 -3.8595 17 14 2 0 0 0 8448 2 17658 17658;17674 0.62683 0.37535 1 1370300 12254 4375 7744 7747 12498;12499 12498 -0.008904697818934437 EITNEFLTRFC 11 Unmodified _EITNEFLTRFC_ 0 0 0 REV__ENST00000472420.5_1_2:44123526-44126707:-|nuORF REV__ENST00000472420.5_1_2:44123526-44126707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2250061035156 3 458.223705 1371.64929 NaN NaN NaN NaN NaN NaN NaN 76.047 1 76.047 75.547 76.547 0 0 0 0 0.22632 1 14777 14777 0.2986 0.1266 1 + 12255 22054 7745 7748 12500 12500 -0.021672098623866987 EITNYKIY 8 Unmodified _EITNYKIY_ 0 0 0 REV__ENSG00000112249|ENST00000369162|ASCC3 REV__ENSG00000112249|ENST00000369162|ASCC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2797241210938 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 141.43 1 136.56 136.06 137.06 -4.8678 0 0 0 0.21323 1 27293 27293 14.582 5.1986 1 + 12256 15289 7746 7749 12501 12501 0.01394634349117041 EIVKDKILTW 10 Unmodified _EIVKDKILTW_ 0 0 0 REV__ENSG00000180878|ENST00000316375|C11orf42 REV__ENSG00000180878|ENST00000316375|C11orf42 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7720336914062 2 622.866089 1243.71762 NaN NaN NaN NaN NaN NaN NaN 74.505 1 71.14 70.64 71.64 -3.3643 0 0 0 0.22588 1 14535 14535 6.7232 0.51738 1 + 12257 18701 7747 7750 12502 12502 0.10551402779788077 EIVLFRFRKFE 11 Unmodified _EIVLFRFRKFE_ 0 0 0 REV__nc|ENSG00000152270|Q13370-2|PDE3B REV__nc|ENSG00000152270|Q13370-2|PDE3B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.40087890625 2 742.424636 1482.83472 NaN NaN NaN NaN NaN NaN NaN 171.29 1 166.37 165.87 166.87 -4.9149 0 0 0 0.22765 1 33907 33907 10.151 4.8537 1 + 12258 17104 7748 7751 12503 12503 0.11261560719390218 EIVLKKRVEF 10 Unmodified _EIVLKKRVEF_ 0 0 0 REV__tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1 REV__tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7608642578125 2 630.887355 1259.76016 NaN NaN NaN NaN NaN NaN NaN 81.763 1 81.763 81.263 82.263 0 0 0 0 0.22588 1 15928 15928 10.824 0.75 1 + 12259 25468 7749 7752 12504 12504 0.14066797908026274 EIVVKPNLEY 10 Unmodified _EIVVKPNLEY_ 0 0 0 PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant;ENSG00000129317|ENST00000344862|PUS7L PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2972412109375 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 72.416 1 72.416 71.916 72.916 0 0 0 0 0.22588 1 14043 14043 6.7232 0 1 12260 3562 7750 7753 12505 12505 0.061468369917974996 EIVWILCKGLS 11 Unmodified _EIVWILCKGLS_ 0 0 0 REV__ENST00000331835.9_2_1:87379959-87380010:-|nuORF REV__ENST00000331835.9_2_1:87379959-87380010:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7778930664062 2 630.854667 1259.69478 NaN NaN NaN NaN NaN NaN NaN 168.54 1 168.54 168.04 169.04 0 0 0 0 0.21872 1 34525 34525 14.405 4.2548 1 + 12261 20619 7751 7754 12506 12506 0.07532060390690276 EIVWQSGV 8 Unmodified _EIVWQSGV_ 0 0 0 tr|U7T4Z5|U7T4Z5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00250PE=4SV=1 tr|U7T4Z5|U7T4Z5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00250PE=4SV=1 tr|U7T4Z5|U7T4Z5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00250PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.242919921875 2 459.239993 916.465432 -0.20609 -9.4645E-05 0.15544 7.1384E-05 -0.050652 -2.3262E-05 459.24001135076344 49.613 1.1545 46.732 46.063 47.218 -2.8811 99 32 5 0 0 0 0.66265 1 9461 9461 18.135 4.6271 1 41386000 12262 26443 7752 7755 12507 12507 0.0038580948911430824 EIWGGENME 9 Unmodified _EIWGGENME_ 0 0 0 GALNT6|p.V384M|1|0.34|ENSG00000139629|chr12:51360738-51360738|C/T|missense_variant GALNT6|p.V384M|1|0.34|ENSG00000139629|chr12:51360738-51360738|C/T|missense_variant GALNT6|p.V384M|1|0.34|ENSG00000139629|chr12:51360738-51360738|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2683715820312 2 532.721307 1063.42806 0.60486 0.00032222 0.97619 0.00052004 1.581 0.00084226 532.7217994136594 113.83 0.7977 109.56 109.16 109.96 -4.2726 49 22 3 0 0 0 0.64382 1 21964 21964 10.074 0.72649 1 5867200 12263 11837 7753 7756 12508 12508 -0.10111649838813719 EIWKMNTASWI 11 Unmodified _EIWKMNTASWI_ 0 0 0 REV__ENSG00000164332|ENST00000296786|UBLCP1 REV__ENSG00000164332|ENST00000296786|UBLCP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.231689453125 3 460.232312 1377.67511 NaN NaN NaN NaN NaN NaN NaN 92.792 1 88.948 88.448 89.448 -3.844 0 0 0 0.22632 1 17783 17783 3.0723 0 1 + 12264 17675 7754 7757 12509 12509 0.0013768437991075189 EIWLSRESLFR 11 Unmodified _EIWLSRESLFR_ 0 0 0 nc|ENSG00000133687|Q8IUR5-3|TMTC1;ENST00000553189.5_1_12:29689066-29935873:-|nuORF;nc|ENSG00000133687|Q8IUR5-2|TMTC1;TMTC1|p.E735Kfs*5|1|0.3|ENSG00000133687|chr12:29516454-29516454|T/-|frameshift_variant;nc|ENSG00000133687|Q8IUR5-1|TMTC1;ENSG00000133687|ENST00000539277|TMTC1 nc|ENSG00000133687|Q8IUR5-3|TMTC1 nc|ENSG00000133687|Q8IUR5-3|TMTC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72418212890625 3 479.261259 1434.76195 -0.057364 -2.7493E-05 -0.013504 -6.4718E-06 -0.070868 -3.3964E-05 479.2612370949399 128.57 0.20988 128.57 128.46 128.67 0 6 5 2 0 0 0 0.96165 1 25393 25393 2.4348 1.22 1 1053300 12265 3812 7755 7758 12510 12510 0.061958069259844706 EIYIKREK 8 Unmodified _EIYIKREK_ 0 0 0 SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant;ENSG00000007908|ENST00000333360|SELE SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2134094238281 3 360.213358 1077.61824 0.057567 2.0736E-05 -0.037952 -1.3671E-05 0.019615 7.0655E-06 360.21331448370563 53.816 0.49435 50.681 50.237 50.731 -3.1352 17 13 2 0 0 0 0.73833 1 9903 9903 8.7454 0.58988 1 588320 12266 1029 7756 7759 12511 12511 0.0825400488570267 EIYTYIGSV 9 Unmodified _EIYTYIGSV_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2632446289062 2 522.76604 1043.51753 0.50041 0.0002616 -0.3365 -0.00017591 0.16391 8.5688E-05 522.7657916503321 160.89 0.98988 155.63 155.13 156.12 -5.2527 66 27 3 0 0 0 0.79204 1 31134 31134 7.2892 0 1 11993000 12267 3536 7757 7760 12512 12512 -0.0024907188781071454 EKAKRILK 8 Unmodified _EKAKRILK_ 0 0 0 REV__ENSG00000181061|ENST00000321331|HIGD1A REV__ENSG00000181061|ENST00000321331|HIGD1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 329.22216796875 3 329.222076 984.6444 NaN NaN NaN NaN NaN NaN NaN 84.002 1 80.394 79.894 80.894 -3.6079 0 0 0 0.21486 1 16422 16422 3.5965 0 1 + 12268 18715 7758 7761 12513 12513 0.1514631884784876 EKALLQLRL 9 Unmodified _EKALLQLRL_ 0 0 0 REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.5715026855469 3 361.901003 1082.68118 NaN NaN NaN NaN NaN NaN NaN 97.064 1 92.967 92.467 93.467 -4.0978 0 0 0 0.19657 1 19044 19044 4.897 0 1 + 12269 18574 7759 7762 12514 12514 0.143145706737414 EKCPELSR 8 Unmodified _EKCPELSR_ 0 0 0 REV__ENST00000415609.6_1_3:69126967-69127051:-|nuORF REV__ENST00000415609.6_1_3:69126967-69127051:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24371337890625 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 83.563 1 79.955 79.455 80.455 -3.6079 0 0 0 0.20761 1 16335 16335 19.257 0 1 + 12270 21456 7760 7763 12515 12515 -0.011950493596486922 EKCQWAEHVD 10 Unmodified _EKCQWAEHVD_ 0 0 0 REV__tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1 REV__tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7719116210938 2 622.771862 1243.52917 NaN NaN NaN NaN NaN NaN NaN 38.634 1 36.085 35.585 36.585 -2.5491 0 0 0 0.22588 1 7166 7166 3.5965 0.31518 1 + 12271 25083 7761 7764 12516 12516 -0.0828519813615003 EKDNSGLRY 9 Unmodified _EKDNSGLRY_ 0 0 0 REV__ENST00000480586.1_1_1:32050752-32051478:+|nuORF REV__ENST00000480586.1_1_1:32050752-32051478:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26513671875 2 541.26727 1080.51999 0.21854 0.00011829 -1.1167 -0.00060444 -0.89818 -0.00048615 541.2654463695 93.656 1.0031 89.665 89.243 90.246 -3.9907 100 28 5 0 0 0 0.25976 1 18409 18409 17.113 8.9574 1 31712000 + 12272 16693 7762 7765 12517 12517 -0.017052234301445424 EKDNSGLRY 9 Unmodified _EKDNSGLRY_ 0 0 0 REV__ENST00000480586.1_1_1:32050752-32051478:+|nuORF REV__ENST00000480586.1_1_1:32050752-32051478:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.265380859375 2 541.26727 1080.51999 0.2683 0.00014522 -1.3077 -0.00070779 -1.0394 -0.00056257 541.2653217461133 93.841 0.92825 89.698 89.245 90.173 -4.1435 106 26 5 0 0 0 0.069179 1 17859 17859 59.368 50.617 1 34526000 + 12273 16693 7762 7765 12518 12518 -0.017052234301445424 EKDNSGLRY 9 Unmodified _EKDNSGLRY_ 0 0 0 REV__ENST00000480586.1_1_1:32050752-32051478:+|nuORF REV__ENST00000480586.1_1_1:32050752-32051478:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.265380859375 2 541.26727 1080.51999 0.1429 7.7349E-05 -1.3859 -0.00075014 -1.243 -0.00067279 541.2654113638747 93.538 1.0027 89.694 89.26 90.263 -3.844 108 28 5 0 0 0 0.069179 1 17913 17913 51.415 45.547 1 27294000 + 12274 16693 7762 7765 12519 12519 -0.017052234301445424 EKDQYRKQ 8 Unmodified _EKDQYRKQ_ 0 0 0 CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant;CARD10|p.K896Rfs*9|1|0.27|ENSG00000100065|chr22:37492501-37492501|G/-|frameshift_variant;ENSG00000100065|ENST00000251973|CARD10;nc|ENSG00000100065|Q9BWT7-2|CARD10 CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7688598632812 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 46.592 1 46.592 46.092 47.092 0 0 0 0 0.20618 1 8778 8778 20.454 3.3407 1 12275 387 7763 7766 12520 12520 0.008587693238041538 EKDVRLFHC 9 Carbamidomethyl (C) _EKDVRLFHC(Carbamidomethyl (C))_ EKDVRLFHC(1) EKDVRLFHC(55) 0 1 0 REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3019409179688 2 602.30059 1202.58663 1.6534 0.00099586 0.87401 0.00052642 2.5274 0.0015223 602.3010821811184 22.414 0.89289 20.94 20.66 21.553 -1.4742 79 25 5 0 0 0 0.10297 1 3841 3841 54.774 54.774 1 32436000 + 12276 14570 7764 7767 12521 12521 16 -0.006563111399145782 EKDVRLFHC 9 Carbamidomethyl (C) _EKDVRLFHC(Carbamidomethyl (C))_ EKDVRLFHC(1) EKDVRLFHC(46) 0 1 0 REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3018188476562 2 602.30059 1202.58663 1.9478 0.0011731 0.46509 0.00028013 2.4129 0.0014533 602.3007974791542 24.157 0.59908 22.604 22.285 22.884 -1.5532 50 16 4 0 0 0 0.13708 1 4183 4183 46.021 46.021 1 12103000 + 12277 14570 7764 7767 12522 12522 16 -0.006563111399145782 EKDWEDNPF 9 Unmodified _EKDWEDNPF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1;SBF1|p.A530Sfs*46|1|0.17|ENSG00000100241|chr22:50464583-50464584|-/G|frameshift_variant;SBF1|p.L946Wfs*16|1|0.26|ENSG00000100241|chr22:50461526-50461526|G/-|frameshift_variant;SBF1|p.S1077Qfs*11|2|0.34|ENSG00000100241|chr22:50460326-50460327|-/G|frameshift_variant;SBF1|p.S1077Afs*28|3|0.34|ENSG00000100241|chr22:50460327-50460327|G/-|frameshift_variant;ENST00000399627.3_1_22:50906187-50913269:-|nuORF nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2703857421875 2 590.251286 1178.48802 NaN NaN NaN NaN NaN NaN NaN 71.983 1 68.444 67.944 68.944 -3.5385 0 0 0 0.23508 1 13650 13650 4.756 0 1 12278 1942 7765 7768 12523 12523 -0.09408635903969298 EKEAVKKWIDK 11 Unmodified _EKEAVKKWIDK_ 0 0 0 REV__nc|ENSG00000104611|Q9H788-2|SH2D4A REV__nc|ENSG00000104611|Q9H788-2|SH2D4A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2261047363281 3 458.59776 1372.77145 NaN NaN NaN NaN NaN NaN NaN 92.087 1 87.992 87.492 88.492 -4.0946 0 0 0 0.23307 1 17541 17541 5.8681 1.1522 1 + 12279 14928 7766 7769 12524 12524 0.09997575211514231 EKEESPPD 8 Unmodified _EKEESPPD_ 0 0 0 REV__ENST00000390664.2_1_16:75528904-75529081:-|nuORF REV__ENST00000390664.2_1_16:75528904-75529081:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25848388671875 2 465.70618 929.397806 0.17266 8.0409E-05 -0.10513 -4.896E-05 0.067531 3.1449E-05 465.7060709078008 27.295 1.4089 27.295 26.668 28.077 0 108 40 4 0 0 0 0.9455 1 4714 4714 16.942 6.1184 1 11680000 + 12280 21198 7767 7770 12525 12525 -0.06971685232372238 EKELLLDAY 9 Unmodified _EKELLLDAY_ 0 0 0 REV__ENSG00000096401|ENST00000371477|CDC5L REV__ENSG00000096401|ENST00000371477|CDC5L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.782958984375 2 547.292422 1092.57029 0.3232 0.00017688 -0.25794 -0.00014117 0.065262 3.5718E-05 547.2921257014316 120.7 0.53427 120.7 120.35 120.89 0 40 14 4 0 0 0 0.37634 1 23813 23813 36.127 1.7253 1 5223600 + 12281 14622 7768 7771 12526 12526 0.0277088617501704 EKELLLDAY 9 Unmodified _EKELLLDAY_ 0 0 0 REV__ENSG00000096401|ENST00000371477|CDC5L REV__ENSG00000096401|ENST00000371477|CDC5L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7754516601562 2 547.292422 1092.57029 0.29939 0.00016386 -0.20389 -0.00011159 0.095501 5.2267E-05 547.7938294379526 125.25 0.60477 120.6 120.24 120.85 -4.6495 37 16 3 0 0 0 0.16029 2 24103 24088;24103 36.127 12.026 1 3927400 + 12282 14622 7768 7771 12527;12528 12528 0.0277088617501704 EKELSRLGF 9 Unmodified _EKELSRLGF_ 0 0 0 REV__ENST00000477081.1_1_17:59482609-59483362:+|nuORF REV__ENST00000477081.1_1_17:59482609-59483362:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 74.497 1 71.133 70.633 71.633 -3.3643 0 0 0 0.23508 1 14533 14533 10.8 3.6978 1 + 12283 15645 7769 7772 12529 12529 0.0461712798901317 EKELSRLGF 9 Unmodified _EKELSRLGF_ 0 0 0 REV__ENST00000477081.1_1_17:59482609-59483362:+|nuORF REV__ENST00000477081.1_1_17:59482609-59483362:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 74.75 1 71.156 70.656 71.656 -3.594 0 0 0 0.23508 1 14201 14201 10.8 3.6978 1 + 12284 15645 7769 7772 12530 12530 0.0461712798901317 EKENTYTRY 9 Unmodified _EKENTYTRY_ 0 0 0 ENST00000420752.1_1_10:50980319-50981214:+|nuORF ENST00000420752.1_1_10:50980319-50981214:+|nuORF ENST00000420752.1_1_10:50980319-50981214:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2852783203125 2 602.28566 1202.55677 NaN NaN NaN NaN NaN NaN NaN 90.17 1 86.125 85.625 86.625 -4.0443 0 0 0 0.19684 1 17176 17176 0.12781 0.098532 1 12285 9662 7770 7773 12531 12531 -0.03640971604227161 EKEQQLRQLER 11 Unmodified _EKEQQLRQLER_ 0 0 0 REV__nc|ENSG00000100106|Q9H2D6-5|TRIOBP REV__nc|ENSG00000100106|Q9H2D6-5|TRIOBP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 486.2697448730469 3 486.267073 1455.77939 NaN NaN NaN NaN NaN NaN NaN 102.55 1 102.55 102.05 103.05 0 0 0 0 0.22632 1 20143 20143 0.2986 0 1 + 12286 14667 7771 7774 12532 12532 0.0697310246100642 EKEREDLY 8 Unmodified _EKEREDLY_ 0 0 0 EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant;ENSG00000102189|ENST00000322349|EEA1 EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant EEA1|p.N1389Mfs*3|1|0.33|ENSG00000102189|chr12:92776081-92776081|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26220703125 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 64.279 1 61.022 60.522 61.522 -3.2567 0 0 0 0.048724 1 12067 12067 53.576 5.2297 1 12287 917 7772 7775 12533 12533 -0.028280455242793323 EKERLRQWYYV 11 Unmodified _EKERLRQWYYV_ 0 0 0 REV__CLMP|p.I169L|1|0.17|ENSG00000166250|chr11:123083731-123083731|T/G|missense_variant REV__CLMP|p.I169L|1|0.17|ENSG00000166250|chr11:123083731-123083731|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3816528320312 2 785.412257 1568.80996 NaN NaN NaN NaN NaN NaN NaN 100.95 1 96.653 96.153 97.153 -4.297 0 0 0 0.22632 1 19316 19316 0.026206 0 1 + 12288 13450 7773 7776 12534 12534 0.048308808460433283 EKERWGGPK 9 Unmodified _EKERWGGPK_ 0 0 0 REV__nc|ENSG00000107581|Q14152-2|EIF3A REV__nc|ENSG00000107581|Q14152-2|EIF3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7885131835938 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 149.42 1 144.68 144.18 145.18 -4.7323 0 0 0 0.19711 1 29677 29677 1.2148 0 1 + 12289 15085 7774 7777 12535 12535 0.022433770490579263 EKEYKEKYK 9 Unmodified _EKEYKEKYK_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.75537109375 2 622.829703 1243.64485 NaN NaN NaN NaN NaN NaN NaN 150.96 1 146.21 145.71 146.71 -4.7523 0 0 0 0.20294 1 29986 29986 22.736 2.3217 1 + 12290 18819 7775 7778 12536 12536 0.03277648986386339 EKEYKEKYK 9 Unmodified _EKEYKEKYK_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7823486328125 2 622.829703 1243.64485 NaN NaN NaN NaN NaN NaN NaN 151.88 1 146.64 146.14 147.14 -5.2365 0 0 0 0.21469 1 29442 29442 19.257 2.1441 1 + 12291 18819 7775 7778 12537 12537 0.03277648986386339 EKFIKLYQ 8 Unmodified _EKFIKLYQ_ 0 0 0 REV__CON__Q2YDI2 REV__CON__Q2YDI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 534.8063354492188 2 534.808042 1067.60153 NaN NaN NaN NaN NaN NaN NaN 175.08 1 170.19 169.69 170.69 -4.8916 0 0 0 0.23626 1 34891 34891 0.063987 0 1 + + 12292 13542 7776 7779 12538 12538 0.07043503999739187 EKFMREEN 8 Unmodified _EKFMREEN_ 0 0 0 REV__CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant REV__CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2616577148438 2 541.750398 1081.48624 0.51478 0.00027888 1.4556 0.0007886 1.9704 0.0010675 541.7507322516695 119.28 0.84978 114.77 114.28 115.13 -4.507 46 23 3 0 0 0 0.91917 1 23520 23520 26.884 12.978 1 1667000 + 12293 13376 7777 7780 12539 12539 -0.051239681935385306 EKFMREEN 8 Unmodified _EKFMREEN_ 0 0 0 REV__CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant REV__CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2732543945312 2 541.750398 1081.48624 0.48201 0.00026113 2.0408 0.0011056 2.5228 0.0013667 541.751370346267 119.21 0.79863 114.74 114.64 115.44 -4.467 31 22 2 0 0 0 0.69702 1 23020 23020 2.643 1.9616 1 1476800 + 12294 13376 7777 7780 12540 12540 -0.051239681935385306 EKFSNTLDQ 9 Unmodified _EKFSNTLDQ_ 0 0 0 tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1 tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1 tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2601318359375 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 115.13 1 115.13 114.63 115.63 0 0 0 0 0.12123 1 22656 22656 34.402 9.7278 1 12295 26183 7778 7781 12541 12541 -0.028280455242793323 EKGAQHVGTH 10 Unmodified _EKGAQHVGTH_ 0 0 0 REV__nc|ENSG00000189001|Q6UWP8-2|SBSN REV__nc|ENSG00000189001|Q6UWP8-2|SBSN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.269775390625 2 532.267604 1062.52066 -0.10517 -5.5977E-05 -0.080981 -4.3104E-05 -0.18615 -9.9081E-05 532.2676256018043 17.804 1.1087 16.493 16.136 17.245 -1.3109 76 24 5 0 0 0 0.53163 1 2814 2814 0.043787 0 1 93142000 + 12296 19184 7779 7782 12542 12542 -0.008103839904151755 EKGFPVTSP 9 Unmodified _EKGFPVTSP_ 0 0 0 ENST00000589408.1_3_19:38893886-38894111:+|nuORF ENST00000589408.1_3_19:38893886-38894111:+|nuORF ENST00000589408.1_3_19:38893886-38894111:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2532043457031 2 481.2531 960.491647 -0.21289 -0.00010245 0.74467 0.00035837 0.53178 0.00025592 481.2533548549371 20.464 0.49329 19.079 18.916 19.41 -1.3847 29 13 3 0 0 0 0.54076 1 3220 3220 17.113 1.2657 1 3452800 12297 11590 7780 7783 12543 12543 0.00982078660570096 EKGISDLAQHY 11 Unmodified _EKGISDLAQHY_ 0 0 0 CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;ENSG00000163468|ENST00000295688|CCT3;nc|ENSG00000163468|P49368-2|CCT3 CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76708984375 2 630.814584 1259.61462 NaN NaN NaN NaN NaN NaN NaN 90.304 1 86.445 85.945 86.945 -3.8595 0 0 0 0.23379 1 17667 17667 5.2969 0 1 12298 436 7781 7784 12544 12544 -0.004807096788226772 EKGRAPWL 8 Unmodified _EKGRAPWL_ 0 0 0 REV__ENST00000573740.1_1_17:4542344-4544955:-|nuORF REV__ENST00000573740.1_1_17:4542344-4544955:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.200927734375 3 319.51526 955.52395 NaN NaN NaN NaN NaN NaN NaN 94.671 1 90.48 89.98 90.98 -4.1911 0 0 0 0.21486 1 18065 18065 0.45834 0 1 + 12299 17472 7782 7785 12545 12545 0.04440910854214053 EKGSPEDKE 9 Unmodified _EKGSPEDKE_ 0 0 0 ENSG00000160200|ENST00000398165|CBS;nc|ENSG00000160200|P35520-2|CBS;ENST00000465732.5_1_21:44488493-44493403:-|nuORF ENSG00000160200|ENST00000398165|CBS ENSG00000160200|ENST00000398165|CBS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1020.4761352539062 1 1018.46875 1017.46147 0.12407 0.00012636 -0.30999 -0.00031571 -0.18592 -0.00018935 1018.4683771324428 56.136 1.0288 52.96 52.552 53.58 -3.1761 57 28 3 0 0 0 0.5059 1 10442 10442 19.257 0 1 8275900 12300 5236 7783 7786 12546 12546 -0.04656324795280398 EKHHLFERWLK 11 Unmodified _EKHHLFERWLK_ 0 0 0 REV__ENST00000515119.5_1_4:3517776-3534065:-|nuORF REV__ENST00000515119.5_1_4:3517776-3534065:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.2799377441406 3 508.280765 1521.82047 NaN NaN NaN NaN NaN NaN NaN 89.328 1 89.328 88.828 89.828 0 0 0 0 0.22632 1 17444 17444 0.172 0 1 + 12301 17632 7784 7787 12547 12547 0.08042908291099593 EKHWWQDLFR 10 Unmodified _EKHWWQDLFR_ 0 0 0 ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000124198|ENST00000371917|ARFGEF2 ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78131103515625 3 482.242199 1443.70477 NaN NaN NaN NaN NaN NaN NaN 17.224 1 16.008 15.508 16.508 -1.2159 0 0 0 2.8426 1 2751 2751 0.043787 0 1 12302 197;3298 7785 7788 12548 12548 0.0006638444026521029 EKIATTRGHKD 11 Unmodified _EKIATTRGHKD_ 0 0 0 EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant;EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant;nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6 EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 419.2198486328125 3 419.229959 1254.66805 NaN NaN NaN NaN NaN NaN NaN 78.772 1 75.096 74.596 75.596 -3.676 0 0 0 0.22632 1 15006 15006 3.0723 3.0461 1 12303 943 7786 7789 12549 12549 0.05090087823691647 EKIKLKKKRKR 11 Unmodified _EKIKLKKKRKR_ 0 0 0 ENST00000495198.6_1_5:64023893-64064425:-|nuORF;SREK1IP1|p.K137Efs*12|1|0.42|ENSG00000153006|chr5:64724444-64724445|-/T|frameshift_variant;SREK1IP1|p.G128Rfs*21|1|0.17|ENSG00000153006|chr5:64724470-64724471|-/T|frameshift_variant;ENSG00000153006|ENST00000513458|SREK1IP1 ENST00000495198.6_1_5:64023893-64064425:-|nuORF ENST00000495198.6_1_5:64023893-64064425:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 728.0819091796875 2 728.003919 1453.99329 NaN NaN NaN NaN NaN NaN NaN 172.44 1 167.55 167.05 168.05 -4.881 0 0 0 0.23698 1 34227 34227 0.30703 0.30703 1 12304 4952 7787 7790 12550 12550 0.2844489941833217 EKIWHHTFY 9 Unmodified _EKIWHHTFY_ 0 0 0 ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;POTEE|p.N792Kfs*34|1|0.2|ENSG00000188219|chr2:131263828-131263829|-/A|frameshift_variant;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENSG00000159251|ENST00000290378|ACTC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.33563232421875 3 420.876857 1259.60874 0.96176 0.00040478 0.7712 0.00032458 1.733 0.00072936 420.87709121759207 25.258 0.41994 23.61 23.371 23.791 -1.6482 20 11 3 0 0 0 0.88284 1 4403 4403 2.4985 1.8008 1 593160 12305 10084;4508;1521;11461 7788 7791 12551 12551 -0.010677633998284364 EKIWHHTFY 9 Unmodified _EKIWHHTFY_ 0 0 0 ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;POTEE|p.N792Kfs*34|1|0.2|ENSG00000188219|chr2:131263828-131263829|-/A|frameshift_variant;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENSG00000159251|ENST00000290378|ACTC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 420.876857 1259.60874 0.10583 4.4543E-05 1.03 0.00043352 1.1359 0.00047807 420.87735544321544 23.662 0.34703 23.662 23.48 23.827 0 0.08616 -0.00040518 NaN 2.4985 17 9 3 NaN NaN NaN NaN 0 NaN NaN 0 676980 12306 10084;4508;1521;11461 7788 7791 -0.010677633998284364 EKIWHHTFY 9 Unmodified _EKIWHHTFY_ 0 0 0 ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;POTEE|p.N792Kfs*34|1|0.2|ENSG00000188219|chr2:131263828-131263829|-/A|frameshift_variant;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENSG00000159251|ENST00000290378|ACTC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 420.876857 1259.60874 0.032077 1.3501E-05 1.6566 0.00069721 1.6887 0.00071072 420.8774863984549 25.103 0.34879 23.569 23.402 23.751 -1.5342 -0.0068561 0.00038589 NaN 2.4985 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 388420 12307 10084;4508;1521;11461 7788 7791 -0.010677633998284364 EKIWHHTFY 9 Unmodified _EKIWHHTFY_ 0 0 0 ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;POTEE|p.N792Kfs*34|1|0.2|ENSG00000188219|chr2:131263828-131263829|-/A|frameshift_variant;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENSG00000159251|ENST00000290378|ACTC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 420.876857 1259.60874 -0.45105 -0.00018984 1.8875 0.00079441 1.4365 0.00060458 420.87758828111134 25.316 0.31065 23.462 23.328 23.638 -1.8534 -0.11335 0.00067749 NaN 2.4985 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 495260 12308 10084;4508;1521;11461 7788 7791 -0.010677633998284364 EKKEAKQKY 9 Unmodified _EKKEAKQKY_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3257446289062 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 124.96 1 120.36 119.86 120.86 -4.5984 0 0 0 0.23508 1 24641 24641 11.64 2.2572 1 12309 1798 7789 7792 12552 12552 0.06533086051808823 EKKEAKQKY 9 Unmodified _EKKEAKQKY_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3218994140625 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 128.9 1 124.08 123.58 124.58 -4.817 0 0 0 0.19674 1 24744 24744 0.12781 0 1 12310 1798 7789 7792 12553 12553 0.06533086051808823 EKKEDNRY 8 Unmodified _EKKEDNRY_ 0 0 0 nc|ENSG00000184156|O43525-2|KCNQ3;ENST00000519589.1_1_8:133141511-133152462:-|nuORF;KCNQ3|p.F713Lfs*6|1|0.24|ENSG00000184156|chr8:132129742-132129742|A/-|frameshift_variant;ENSG00000184156|ENST00000388996|KCNQ3;KCNQ3|p.D679N|1|0.39|ENSG00000184156|chr8:132129846-132129846|C/T|missense_variant nc|ENSG00000184156|O43525-2|KCNQ3 nc|ENSG00000184156|O43525-2|KCNQ3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2666015625 2 541.26727 1080.51999 0.9109 0.00049304 -0.65567 -0.00035489 0.25523 0.00013815 541.2669539597139 28.932 0.2035 26.976 26.846 27.049 -1.9561 10 5 2 0 0 0 8448 1 5183 5183 29.841 16.226 1 425600 12311 12509 7790 7793 12554 12554 -0.017052234301445424 EKKEDNRY 8 Unmodified _EKKEDNRY_ 0 0 0 nc|ENSG00000184156|O43525-2|KCNQ3;ENST00000519589.1_1_8:133141511-133152462:-|nuORF;KCNQ3|p.F713Lfs*6|1|0.24|ENSG00000184156|chr8:132129742-132129742|A/-|frameshift_variant;ENSG00000184156|ENST00000388996|KCNQ3;KCNQ3|p.D679N|1|0.39|ENSG00000184156|chr8:132129846-132129846|C/T|missense_variant nc|ENSG00000184156|O43525-2|KCNQ3 nc|ENSG00000184156|O43525-2|KCNQ3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2659301757812 2 541.26727 1080.51999 0.36014 0.00019493 -1.5617 -0.00084528 -1.2015 -0.00065035 541.267340895308 28.814 0.20605 27.059 26.911 27.117 -1.7552 9 5 3 0 0 0 8448 1 4868 4868 29.841 16.226 1 425240 12312 12509 7790 7793 12555 12555 -0.017052234301445424 EKKGNKKM 8 Unmodified _EKKGNKKM_ 0 0 0 REV__ENST00000355739.8_3_13:103506203-103508442:+|nuORF REV__ENST00000355739.8_3_13:103506203-103508442:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7720031738281 2 481.776219 961.537886 NaN NaN NaN NaN NaN NaN NaN 155.48 1 150.7 150.2 151.2 -4.7791 0 0 0 0.23107 1 30905 30905 0.063987 0 1 + 12313 20799 7791 7794 12556 12556 0.05557820291016924 EKKILNHYFNF 11 Unmodified _EKKILNHYFNF_ 0 0 0 tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1 tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1 tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 726.6782836914062 2 726.885344 1451.75613 NaN NaN NaN NaN NaN NaN NaN 167.41 1 162.62 162.12 163.12 -4.7898 0 0 0 0.22632 1 33758 33758 0.00056442 0 1 12314 26310 7792 7795 12557 12557 0.04832708414323861 EKKKKKIKTI 10 Unmodified _EKKKKKIKTI_ 0 0 0 nc|ENSG00000170322|Q6P4R8-2|NFRKB;nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB nc|ENSG00000170322|Q6P4R8-2|NFRKB nc|ENSG00000170322|Q6P4R8-2|NFRKB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7777709960938 2 622.426648 1242.83874 NaN NaN NaN NaN NaN NaN NaN 174.89 1 170.01 169.51 170.51 -4.8845 0 0 0 0.22588 1 34756 34756 0.45834 0 1 12315 12456 7793 7796 12558 12558 0.2270365021311136 EKKKKKKLL 9 Unmodified _EKKKKKKLL_ 0 0 0 REV__ENST00000485024.1_1_3:184529997-184533630:+|nuORF REV__ENST00000485024.1_1_3:184529997-184533630:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 571.7516479492188 2 571.902808 1141.79106 NaN NaN NaN NaN NaN NaN NaN 170.75 1 165.87 165.37 166.37 -4.873 0 0 0 0.23508 1 33807 33807 0.6015 0 1 + 12316 22214 7794 7797 12559 12559 0.22583996012940588 EKKMETEVA 9 Unmodified _EKKMETEVA_ 0 0 0 REV__nc|ENSG00000035928|P35251|RFC1 REV__nc|ENSG00000035928|P35251|RFC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2698974609375 2 532.768257 1063.52196 0.32129 0.00017117 -0.40414 -0.00021531 -0.082853 -4.4141E-05 532.768017663903 36.528 1.0972 34.19 33.677 34.774 -2.3375 78 30 3 0 0 0 0.15214 1 6486 6486 43.858 0.085901 1 3154700 + 12317 14030 7795 7798 12560 12560 -0.007259307365302448 EKKQREWEQ 9 Unmodified _EKKQREWEQ_ 0 0 0 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 421.32843017578125 3 420.882559 1259.62585 -0.16988 -7.1499E-05 0.37873 0.0001594 0.20885 8.7903E-05 420.88282911403445 22.032 0.37834 20.579 20.386 20.764 -1.4535 22 10 3 0 0 0 0.84208 1 3478 3478 2.2828 0.69049 1 1233100 + 12318 18033 7796 7799 12561 12561 0.006421124153348501 EKKQREWEQ 9 Unmodified _EKKQREWEQ_ 0 0 0 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 420.882559 1259.62585 0.05896 2.4815E-05 0.22991 9.6767E-05 0.28887 0.00012158 420.8826482431941 20.633 0.35444 20.633 20.387 20.742 0 0.024588 -5.8E-05 NaN 2.2828 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1247300 + 12319 18033 7796 7799 0.006421124153348501 EKKQREWEQ 9 Unmodified _EKKQREWEQ_ 0 0 0 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 420.882559 1259.62585 0.42924 0.00018066 -0.2071 -8.7166E-05 0.22214 9.3495E-05 420.8824974391639 22.136 0.34939 20.662 20.519 20.869 -1.4742 0.052864 -0.0006098 NaN 2.2828 25 9 4 NaN NaN NaN NaN 0 NaN NaN 0 1378600 + 12320 18033 7796 7799 0.006421124153348501 EKKQREWEQ 9 Unmodified _EKKQREWEQ_ 0 0 0 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 420.882559 1259.62585 -0.89369 -0.00037614 0.73109 0.0003077 -0.1626 -6.8435E-05 420.88300626188317 22.35 0.39036 20.562 20.392 20.782 -1.7886 -0.047057 0.00057481 NaN 2.2828 31 10 4 NaN NaN NaN NaN 0 NaN NaN 0 1321300 + 12321 18033 7796 7799 0.006421124153348501 EKLAIKFL 8 Unmodified _EKLAIKFL_ 0 0 0 REV__tr|U7T0F6|U7T0F6_FUSNULargeribosomalsubunitproteinuL10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplJPE=3SV=1 REV__tr|U7T0F6|U7T0F6_FUSNULargeribosomalsubunitproteinuL10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplJPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7777099609375 2 481.307678 960.600803 -0.17815 -8.5746E-05 0.52247 0.00025147 0.34432 0.00016572 481.30781683617835 56.389 0.59379 56.389 56.081 56.675 0 26 16 2 0 0 0 8448 1 10733 10733 0.12286 0 1 1560600 + 12322 25267 7797 7800 12562 12562 0.11892709350718178 EKLEERIYQIY 11 Unmodified _EKLEERIYQIY_ 0 0 0 ENSG00000161860|ENST00000293695|SYCE2 ENSG00000161860|ENST00000293695|SYCE2 ENSG00000161860|ENST00000293695|SYCE2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.392822265625 2 742.393199 1482.77184 NaN NaN NaN NaN NaN NaN NaN 60.254 1 60.254 59.754 60.754 0 0 0 0 0.23698 1 11549 11549 1.3295 0.9789 1 12323 5304 7798 7801 12563 12563 0.049769501407354255 EKLEERIYQIY 11 Unmodified _EKLEERIYQIY_ 0 0 0 ENSG00000161860|ENST00000293695|SYCE2 ENSG00000161860|ENST00000293695|SYCE2 ENSG00000161860|ENST00000293695|SYCE2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3943481445312 2 742.393199 1482.77184 NaN NaN NaN NaN NaN NaN NaN 122.81 1 118.23 117.73 118.73 -4.5757 0 0 0 0.22632 1 24213 24213 0.0059557 0 1 12324 5304 7798 7801 12564 12564 0.049769501407354255 EKLEERIYQIY 11 Unmodified _EKLEERIYQIY_ 0 0 0 ENSG00000161860|ENST00000293695|SYCE2 ENSG00000161860|ENST00000293695|SYCE2 ENSG00000161860|ENST00000293695|SYCE2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3916625976562 2 742.393199 1482.77184 NaN NaN NaN NaN NaN NaN NaN 132.36 1 127.72 127.22 128.22 -4.6399 0 0 0 0.22632 1 26092 26092 0.03141 0 1 12325 5304 7798 7801 12565 12565 0.049769501407354255 EKLFTRNHFEY 11 Unmodified _EKLFTRNHFEY_ 0 0 0 REV__nc|ENSG00000053524|Q86YR7-2|MCF2L2 REV__nc|ENSG00000053524|Q86YR7-2|MCF2L2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3726196289062 2 742.370058 1482.72556 NaN NaN NaN NaN NaN NaN NaN 143.97 1 139.03 138.53 139.53 -4.9445 0 0 0 0.23519 1 27795 27795 4.1895 1.9067 1 + 12326 14098 7799 7802 12566 12566 0.0035093002927624184 EKLHNEPI 8 Unmodified _EKLHNEPI_ 0 0 0 REV__nc|ENSG00000167995|O76090-3|BEST1 REV__nc|ENSG00000167995|O76090-3|BEST1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26416015625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 88.443 1 88.443 87.943 88.943 0 0 0 0 0.19753 1 17264 17264 25.399 3.6527 1 + 12327 24153 7800 7803 12567 12567 0.023328834091330464 EKLIKKRNVP 10 Unmodified _EKLIKKRNVP_ 0 0 0 ENST00000552365.1_1_12:53874968-53878035:-|nuORF;nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12;ENST00000547020.1_1_12:53877089-53877236:-|nuORF;MAP3K12|p.S536Lfs*35|1|0.36|ENSG00000139625|chr12:53483098-53483099|-/G|frameshift_variant;MAP3K12|p.S536Hfs*45|1|0.23|ENSG00000139625|chr12:53483099-53483099|G/-|frameshift_variant ENST00000552365.1_1_12:53874968-53878035:-|nuORF ENST00000552365.1_1_12:53874968-53878035:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 613.10986328125 2 612.892972 1223.77139 NaN NaN NaN NaN NaN NaN NaN 171.88 1 167.09 166.59 167.59 -4.7898 0 0 0 0.22588 1 34978 34978 7.2892 0 1 12328 4255 7801 7804 12568 12568 0.16845620002163741 EKLKLLIVPV 10 Unmodified _EKLKLLIVPV_ 0 0 0 REV__nc|ENSG00000173226|Q15051-3|IQCB1 REV__nc|ENSG00000173226|Q15051-3|IQCB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3385620117188 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 172.69 1 172.69 172.19 173.19 0 0 0 0 0.22588 1 35663 35663 1.8442 0.19162 1 + 12329 18342 7802 7805 12569 12569 0.19957771544500247 EKLKWNRRRQR 11 Unmodified _EKLKWNRRRQR_ 0 0 0 REV__ENSG00000169251|ENST00000351193|NMD3 REV__ENSG00000169251|ENST00000351193|NMD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3905639648438 2 785.463481 1568.91241 NaN NaN NaN NaN NaN NaN NaN 177 1 172.1 171.6 172.6 -4.9008 0 0 0 0.23698 1 35295 35295 0.35063 0 1 + 12330 18091 7803 7806 12570 12570 0.15071011428130987 EKLLGKLAK 9 Unmodified _EKLLGKLAK_ 0 0 0 REV__DTX3|p.G110Vfs*86|1|0.17|ENSG00000178498|chr12:57607187-57607187|G/-|frameshift_variant REV__DTX3|p.G110Vfs*86|1|0.17|ENSG00000178498|chr12:57607187-57607187|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.00299072265625 3 333.890215 998.648816 0.51045 0.00017043 -0.32438 -0.00010831 0.18607 6.2128E-05 333.8900476277954 23.317 0.43333 21.764 21.507 21.94 -1.5532 33 11 4 0 0 0 0.83265 1 3987 3987 6.6304 2.4409 1 7398000 + 12331 13756 7804 7807 12571 12571 0.1494378327075765 EKLQAVVAG 9 Unmodified _EKLQAVVAG_ 0 0 0 IRAK1|p.P540Lfs*53|2|0.29|ENSG00000184216|chrX:154013354-154013354|G/-|frameshift_variant;nc|ENSG00000184216|P51617-4|IRAK1;ENSG00000184216|ENST00000369980|IRAK1 IRAK1|p.P540Lfs*53|2|0.29|ENSG00000184216|chrX:154013354-154013354|G/-|frameshift_variant IRAK1|p.P540Lfs*53|2|0.29|ENSG00000184216|chrX:154013354-154013354|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2237854003906 2 457.768917 913.523281 1.0182 0.00046611 -0.61725 -0.00028256 0.40097 0.00018355 457.76850742110895 26.247 0.41089 24.465 24.28 24.691 -1.7821 16 11 2 0 0 0 0.23744 1 4589 4589 36.127 10.728 1 405130 12332 6896 7805 7808 12572 12572 0.06306071414519465 EKLQKVIQR 9 Unmodified _EKLQKVIQR_ 0 0 0 REV__NUMA1|p.T1086I|1|0.08|ENSG00000137497|chr11:72014246-72014246|G/A|missense_variant REV__NUMA1|p.T1086I|1|0.08|ENSG00000137497|chr11:72014246-72014246|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2190856933594 3 381.239907 1140.69789 0.39326 0.00014993 -0.30581 -0.00011659 0.087444 3.3337E-05 381.2397444846764 22.314 0.44389 20.84 20.626 21.07 -1.4742 27 12 3 0 0 0 0.5685 1 3764 3764 15.248 1.7298 1 1620900 + 12333 24389 7806 7809 12573 12573 0.13317071559686156 EKLSSPLNQA 10 Unmodified _EKLSSPLNQA_ 0 0 0 REV__ENST00000524630.5_1_11:57585076-57585268:+|nuORF REV__ENST00000524630.5_1_11:57585076-57585268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79345703125 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 31.631 1 29.483 28.983 29.983 -2.1483 0 0 0 0.22543 1 5456 5456 19.362 2.249 1 + 12334 22674 7807 7810 12574 12574 0.032325202637593975 EKLTHKMEA 9 Unmodified _EKLTHKMEA_ 0 0 0 ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1 ENST00000465604.1_1_1:26227509-26228203:-|nuORF ENST00000465604.1_1_1:26227509-26228203:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7835693359375 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 19.724 1 19.724 19.224 20.224 0 0 0 0 0.21768 1 3235 3235 18.373 1.2602 1 12335 2995 7808 7811 12575 12575 0.014574817372704274 EKLTHKMEA 9 Unmodified _EKLTHKMEA_ 0 0 0 ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1 ENST00000465604.1_1_1:26227509-26228203:-|nuORF ENST00000465604.1_1_1:26227509-26228203:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7842407226562 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 21.314 1 19.839 19.339 20.339 -1.4742 0 0 0 0.19687 1 3599 3599 8.1555 5.657 1 12336 2995 7808 7811 12576 12576 0.014574817372704274 EKLTHKMEA 9 Unmodified _EKLTHKMEA_ 0 0 0 ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1 ENST00000465604.1_1_1:26227509-26228203:-|nuORF ENST00000465604.1_1_1:26227509-26228203:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7843017578125 2 543.784241 1085.55393 -0.18046 -9.8132E-05 -0.10362 -5.6347E-05 -0.28408 -0.00015448 543.7841092177409 21.179 0.21761 19.794 19.684 19.902 -1.3847 6 5 2 0 0 0 0.52027 1 3323 3323 18.373 1.2602 1 219850 12337 2995 7808 7811 12577 12577 0.014574817372704274 EKLYIRTG 8 Unmodified _EKLYIRTG_ 0 0 0 tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1 tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1 tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2576904296875 2 490.282192 978.549831 NaN NaN NaN NaN NaN NaN NaN 155.2 1 150.42 149.92 150.92 -4.7791 0 0 0 0.21486 1 30851 30851 7.9102 0.62092 1 12338 26039 7809 7812 12578 12578 0.059697603058680215 EKLYRVPG 8 Unmodified _EKLYRVPG_ 0 0 0 nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6;nc|ENSG00000047648|O43182-5|ARHGAP6;nc|ENSG00000047648|O43182-2|ARHGAP6 nc|ENSG00000047648|O43182-4|ARHGAP6 nc|ENSG00000047648|O43182-4|ARHGAP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7794189453125 2 481.276909 960.539266 0.12047 5.7979E-05 0.047624 2.292E-05 0.16809 8.0899E-05 481.27687248266113 60.892 2.1052 57.523 56.391 58.497 -3.3694 85 59 2 0 0 0 0.71273 1 11305 11305 12.532 0 1 1455300 12339 1222 7810 7813 12579 12579 0.057417776514284924 EKMAFKRIE 9 Unmodified _EKMAFKRIE_ 0 0 0 REV__ENST00000480540.1_1_14:59261390-59261744:+|nuORF REV__ENST00000480540.1_1_14:59261390-59261744:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.312744140625 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 118.64 1 114.02 113.52 114.52 -4.6106 0 0 0 0.23508 1 22763 22763 10.074 0.6908 1 + 12340 14269 7811 7814 12580 12580 0.04758047525319853 EKMKEQRLREH 11 Unmodified _EKMKEQRLREH_ 0 0 0 nc|ENSG00000137776|Q9NWH9-3|SLTM;ENSG00000137776|ENST00000380516|SLTM nc|ENSG00000137776|Q9NWH9-3|SLTM nc|ENSG00000137776|Q9NWH9-3|SLTM MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3958129882812 2 742.393541 1482.77253 NaN NaN NaN NaN NaN NaN NaN 159.8 1 159.8 159.3 160.3 0 0 0 0 0.23429 1 32087 32087 4.897 1.9018 1 12341 4109 7812 7815 12581 12581 0.050454663087748486 EKMKNDYIY 9 Unmodified _EKMKNDYIY_ 0 0 0 nc|ENSG00000105948|A0AVF1-3|IFT56;ENSG00000105948|ENST00000464848|TTC26;nc|ENSG00000105948|A0AVF1-2|IFT56 nc|ENSG00000105948|A0AVF1-3|IFT56 nc|ENSG00000105948|A0AVF1-3|IFT56 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2894897460938 2 602.289356 1202.56416 0.439 0.0002644 0.2979 0.00017942 0.7369 0.00044383 602.2895105699391 25.048 0.23913 25.048 24.947 25.186 0 11 6 2 0 0 0 0.60489 1 4358 4358 2.4985 0.59211 1 471940 12342 2353 7813 7816 12582 12582 -0.029019553281614208 EKMMVKRRDYL 11 Unmodified _EKMMVKRRDYL_ 0 0 0 nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET nc|ENSG00000165731|P07949-2|RET nc|ENSG00000165731|P07949-2|RET MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2644958496094 3 490.263618 1467.76902 NaN NaN NaN NaN NaN NaN NaN 61.821 1 61.821 61.321 62.321 0 0 0 0 0.22632 1 11857 11857 0.172 0 1 12343 5657 7814 7817 12583 12583 0.05385080210567139 EKMQRVMMV 9 Unmodified _EKMQRVMMV_ 0 0 0 REV__ENSG00000101470|ENST00000372555|TNNC2 REV__ENSG00000101470|ENST00000372555|TNNC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3312377929688 2 576.290322 1150.56609 NaN NaN NaN NaN NaN NaN NaN 124.89 1 120.24 119.74 120.74 -4.6495 0 0 0 0.23508 1 24030 24030 12.241 2.8575 1 + 12344 14792 7815 7818 12584 12584 -0.0031694111555680138 EKMYHTHRRRR 11 Unmodified _EKMYHTHRRRR_ 0 0 0 nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3858642578125 2 785.418217 1568.82188 NaN NaN NaN NaN NaN NaN NaN 172.11 1 167.21 166.71 167.71 -4.8977 0 0 0 0.22632 1 34125 34125 0.58532 0.55911 1 12345 4153 7816 7819 12585 12585 0.06022219108194804 EKNETIYF 8 Unmodified _EKNETIYF_ 0 0 0 ENST00000477892.5_1_3:122128896-122129013:+|nuORF ENST00000477892.5_1_3:122128896-122129013:+|nuORF ENST00000477892.5_1_3:122128896-122129013:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2568359375 2 522.25584 1042.49713 -0.089679 -4.6835E-05 0.65179 0.0003404 0.56211 0.00029356 522.2562327988494 153.12 0.74518 148.35 148.02 148.76 -4.7684 32 20 2 0 0 0 0.40661 1 30462 30462 32.117 3.6301 1 3029300 12346 10309 7817 7820 12586 12586 -0.022422425476179342 EKNETIYF 8 Unmodified _EKNETIYF_ 0 0 0 ENST00000477892.5_1_3:122128896-122129013:+|nuORF ENST00000477892.5_1_3:122128896-122129013:+|nuORF ENST00000477892.5_1_3:122128896-122129013:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2808837890625 2 522.25584 1042.49713 0.43339 0.00022634 -0.061172 -3.1947E-05 0.37222 0.00019439 522.255753139116 153.47 0.44942 148.25 147.97 148.42 -5.2209 21 12 2 0 0 0 0.74718 1 29732 29732 32.117 3.6301 1 2581900 12347 10309 7817 7820 12587 12587 -0.022422425476179342 EKPCKEAMTRH 11 Unmodified _EKPCKEAMTRH_ 0 0 0 PIK3C2A|p.G828Dfs*7|1|0.08|ENSG00000011405|chr11:17122732-17122732|T/-|frameshift_variant;ENSG00000011405|ENST00000691414|PIK3C2A PIK3C2A|p.G828Dfs*7|1|0.08|ENSG00000011405|chr11:17122732-17122732|T/-|frameshift_variant PIK3C2A|p.G828Dfs*7|1|0.08|ENSG00000011405|chr11:17122732-17122732|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 665.1957397460938 2 665.323739 1328.63293 NaN NaN NaN NaN NaN NaN NaN 170.48 1 170.48 169.98 170.98 0 0 0 0 0.22501 1 35055 35055 12.241 3.4953 1 12348 1077 7818 7821 12588 12588 -0.018246143001306336 EKPYECNQCF 10 Unmodified _EKPYECNQCF_ 0 0 0 nc|ENSG00000167785|Q96NG5-2|ZNF558;ENST00000597304.5_1_19:8921959-8932201:-|nuORF;ENSG00000167785|ENST00000601372|ZNF558 nc|ENSG00000167785|Q96NG5-2|ZNF558 nc|ENSG00000167785|Q96NG5-2|ZNF558 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.77001953125 2 630.754824 1259.49509 NaN NaN NaN NaN NaN NaN NaN 142.82 1 137.8 137.3 138.3 -5.0261 0 0 0 0.22588 1 27535 27535 3.5965 0.8613 1 12349 5851 7819 7822 12589 12589 -0.12427362619405358 EKQAAQLKQ 9 Unmodified _EKQAAQLKQ_ 0 0 0 REV__nc|ENSG00000116852|O75037-3|KIF21B REV__nc|ENSG00000116852|O75037-3|KIF21B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2648315429688 2 522.29583 1042.57711 NaN NaN NaN NaN NaN NaN NaN 64.454 1 64.454 63.954 64.954 0 0 0 0 0.19711 1 12409 12409 2.6312 0 1 + 12350 15502 7820 7823 12590 12590 0.05752243846222882 EKQLKFVKKL 10 Unmodified _EKQLKFVKKL_ 0 0 0 CFAP69|p.K687Nfs*43|3|0.26|ENSG00000105792|chr7:90303973-90303973|A/-|frameshift_variant;nc|ENSG00000105792|A5D8W1-2|CFAP69;nc|ENSG00000105792|A5D8W1-5|CFAP69;ENSG00000105792|ENST00000389297|CFAP69;ENST00000485791.5_1_7:89874738-89894644:+|nuORF;nc|ENSG00000105792|A5D8W1-4|CFAP69;nc|ENSG00000105792|A5D8W1-3|CFAP69 CFAP69|p.K687Nfs*43|3|0.26|ENSG00000105792|chr7:90303973-90303973|A/-|frameshift_variant CFAP69|p.K687Nfs*43|3|0.26|ENSG00000105792|chr7:90303973-90303973|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7642211914062 2 630.905548 1259.79654 NaN NaN NaN NaN NaN NaN NaN 138.07 1 133.23 132.73 133.73 -4.84 0 0 0 2.8426 1 26604 26604 0.0013812 0.0008168 1 12351 503 7821 7824 12591 12591 0.17703674804738512 EKQLKGTIKR 10 Unmodified _EKQLKGTIKR_ 0 0 0 REV__ENSG00000168575|ENST00000520262|SLC20A2 REV__ENSG00000168575|ENST00000520262|SLC20A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 600.7118530273438 2 600.874779 1199.73501 NaN NaN NaN NaN NaN NaN NaN 168.99 1 164.2 163.7 164.7 -4.7898 0 0 0 2.8426 1 34201 34201 0.51642 0.45255 1 + 12352 18037 7822 7825 12592 12592 0.1431274310543813 EKQRQWKRKRR 11 Unmodified _EKQRQWKRKRR_ 0 0 0 REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2685546875 3 533.653596 1597.93896 0.11594 6.1873E-05 -3.9655 -0.0021162 -3.8496 -0.0020544 533.6529898178728 153.01 0.17566 153.01 152.85 153.03 0 5 4 2 0 0 0 0.96226 1 30645 30645 0.064406 0 1 2209800 + 12353 20868 7823 7826 12593 12593 0.16390700319470852 EKRARKAA 8 Unmodified _EKRARKAA_ 0 0 0 REV__ENSG00000142207|ENST00000382751|URB1 REV__ENSG00000142207|ENST00000382751|URB1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2499694824219 2 465.2856 928.556647 NaN NaN NaN NaN NaN NaN NaN 77.734 1 74.075 73.575 74.575 -3.6588 0 0 0 0.23312 1 14806 14806 6.2058 1.3088 1 + 12354 16660 7824 7827 12594 12594 0.08951117977073864 EKREDLPSL 9 Unmodified _EKREDLPSL_ 0 0 0 nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;WDFY4|p.E2278Kfs*20|2|0.3|ENSG00000128815|chr10:48873577-48873577|G/-|frameshift_variant nc|ENSG00000128815|Q6ZS81-5|WDFY4 nc|ENSG00000128815|Q6ZS81-5|WDFY4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7940673828125 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 171.87 1 167.08 166.58 167.58 -4.7898 0 0 0 0.21844 1 34975 34975 18.146 4.2403 1 12355 3542 7825 7828 12595 12595 0.032325202637593975 EKREMWGPLGP 11 Unmodified _EKREMWGPLGP_ 0 0 0 COL7A1|p.P1441Lfs*269|1|0.36|ENSG00000114270|chr3:48583737-48583737|G/-|frameshift_variant COL7A1|p.P1441Lfs*269|1|0.36|ENSG00000114270|chr3:48583737-48583737|G/-|frameshift_variant COL7A1|p.P1441Lfs*269|1|0.36|ENSG00000114270|chr3:48583737-48583737|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.8886413574219 3 433.888657 1298.64414 NaN NaN NaN NaN NaN NaN NaN 44.439 1 41.649 41.149 42.149 -2.79 0 0 0 0.23698 1 8350 8350 2.6312 0 1 12356 632 7826 7829 12596 12596 0.006765310656874135 EKRLGAHLAA 10 Unmodified _EKRLGAHLAA_ 0 0 0 REV__ENST00000522548.1_1_8:38704163-38705538:+|nuORF REV__ENST00000522548.1_1_8:38704163-38705538:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2705688476562 2 533.311815 1064.60908 0.54172 0.00028891 -0.36305 -0.00019362 0.17867 9.5289E-05 533.3115738697659 21.439 0.42555 19.964 19.735 20.16 -1.4742 29 11 4 0 0 0 0.39316 1 3607 3607 31.268 3.6395 1 3951400 + 12357 16937 7827 7830 12597 12597 0.07935656320046292 EKRLWRLERRR 11 Unmodified _EKRLWRLERRR_ 0 0 0 CACNA1H|p.R1579W|1|0.32|ENSG00000196557|chr16:1212114-1212114|C/T|missense_variant CACNA1H|p.R1579W|1|0.32|ENSG00000196557|chr16:1212114-1212114|C/T|missense_variant CACNA1H|p.R1579W|1|0.32|ENSG00000196557|chr16:1212114-1212114|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2772827148438 3 533.321846 1596.94371 NaN NaN NaN NaN NaN NaN NaN 28.675 1 28.675 28.175 29.175 0 0 0 0 0.22632 1 5100 5100 0.094841 0.094841 1 12358 364 7828 7831 12598 12598 0.1691158446224108 EKRLWRLERRR 11 Unmodified _EKRLWRLERRR_ 0 0 0 CACNA1H|p.R1579W|1|0.32|ENSG00000196557|chr16:1212114-1212114|C/T|missense_variant CACNA1H|p.R1579W|1|0.32|ENSG00000196557|chr16:1212114-1212114|C/T|missense_variant CACNA1H|p.R1579W|1|0.32|ENSG00000196557|chr16:1212114-1212114|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2666625976562 3 533.321846 1596.94371 NaN NaN NaN NaN NaN NaN NaN 162.3 1 157.51 157.01 158.01 -4.7898 0 0 0 0.22632 1 32292 32292 0 0 1 12359 364 7828 7831 12599 12599 0.1691158446224108 EKRQRRQERRQ 11 Unmodified _EKRQRRQERRQ_ 0 0 0 ENST00000562235.5_1_16:67262534-67263013:+|nuORF;ENST00000563271.5_1_16:67262538-67263013:+|nuORF;ENST00000567193.5_1_16:67262538-67263013:+|nuORF;ENSG00000168701|ENST00000304800|TMEM208 ENST00000562235.5_1_16:67262534-67263013:+|nuORF ENST00000562235.5_1_16:67262534-67263013:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3939208984375 2 785.443277 1568.872 NaN NaN NaN NaN NaN NaN NaN 123.49 1 118.91 118.41 119.41 -4.5757 0 0 0 0.23698 1 24339 24339 2.7352 0.45242 1 12360 5926 7829 7832 12600 12600 0.11032045037745775 EKRRKRGVVLY 11 Unmodified _EKRRKRGVVLY_ 0 0 0 REV__nc|ENSG00000186416|O15226|NKRF REV__nc|ENSG00000186416|O15226|NKRF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 701.8630981445312 2 702.433327 1402.8521 0.98182 0.00068966 0.29474 0.00020703 1.2766 0.0008967 702.9355338907535 167.33 0.16766 162.54 162.49 162.66 -4.7898 6 4 2 0 0 0 0.89126 1 33761 33761 0.00056442 0 1 19488000 + 12361 19030 7830 7833 12601 12601 0.16678901045088423 EKRRRKKEKRR 11 Unmodified _EKRRRKKEKRR_ 0 0 0 REV__nc|ENSG00000151353|Q96B42-2|TMEM18 REV__nc|ENSG00000151353|Q96B42-2|TMEM18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4016723632812 2 785.497856 1568.98116 NaN NaN NaN NaN NaN NaN NaN 174.1 1 169.21 168.71 169.71 -4.8916 0 0 0 0.23698 1 34642 34642 1.1933 1.1933 1 + 12362 17062 7831 7834 12602 12602 0.21942675727837013 EKRRYRFLAEK 11 Unmodified _EKRRYRFLAEK_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 748.4256591796875 2 748.428242 1494.84193 NaN NaN NaN NaN NaN NaN NaN 11.623 1 11.623 11.123 12.123 0 0 0 0 0.22632 1 1556 1556 0.00056442 0 1 12363 3519 7832 7835 12603 12603 0.1143029331985872 EKRSGLQRATY 11 Unmodified _EKRSGLQRATY_ 0 0 0 REV__ENST00000469474.5_1_1:169271551-169293633:-|nuORF REV__ENST00000469474.5_1_1:169271551-169293633:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2149963378906 3 436.905476 1307.6946 NaN NaN NaN NaN NaN NaN NaN 106.39 1 102.12 101.62 102.62 -4.2638 0 0 0 0.23103 1 20941 20941 7.4771 0.85361 1 + 12364 16701 7833 7836 12604 12604 0.053057767150448853 EKSALLLKSY 10 Unmodified _EKSALLLKSY_ 0 0 0 REV__nc|ENSG00000022840|Q8N5U6-2|RNF10 REV__nc|ENSG00000022840|Q8N5U6-2|RNF10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3223876953125 2 576.337164 1150.65977 0.32196 0.00018556 1.3036 0.00075129 1.6255 0.00093684 576.8396472987012 66.3 0.45678 63.017 62.824 63.281 -3.2832 13 12 2 0 0 0 0.91149 1 12527 12527 3.2813 0.97858 1 1411100 + 12365 13991 7834 7837 12605 12605 0.09047140854386271 EKSHFQVAP 9 Unmodified _EKSHFQVAP_ 0 0 0 REV__nc|ENSG00000160688|Q8NFF5-4|FLAD1 REV__nc|ENSG00000160688|Q8NFF5-4|FLAD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2813720703125 2 521.769448 1041.52434 0.46869 0.00024455 -0.7422 -0.00038726 -0.27351 -0.00014271 521.7690443039177 33.138 0.68565 30.922 30.633 31.319 -2.2158 36 19 2 0 0 0 0.28819 1 5731 5731 32.305 32.305 1 2395100 + 12366 17428 7835 7838 12606 12606 0.005242857834218739 EKSIGIDPG 9 Unmodified _EKSIGIDPG_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2350158691406 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 32.152 1 30.126 29.626 30.626 -2.0264 0 0 0 0.23277 1 5570 5570 13.906 3.0821 1 + 12367 16194 7836 7839 12607 12607 0.010254882809022092 EKSKLYEII 9 Unmodified _EKSKLYEII_ 0 0 0 REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21954345703125 3 374.885018 1121.63323 -0.031557 -1.183E-05 -0.11649 -4.3671E-05 -0.14805 -5.5502E-05 374.8848994553058 98.244 0.55593 98.244 97.984 98.54 0 28 15 2 0 0 0 0.65153 1 19270 19270 9.544 2.4423 1 1761800 + 12368 24923 7837 7840 12608 12608 0.07727451963069143 EKSKLYEII 9 Unmodified _EKSKLYEII_ 0 0 0 REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2197570800781 3 374.885018 1121.63323 -0.21887 -8.205E-05 0.14068 5.2737E-05 -0.078192 -2.9313E-05 374.8849855643483 101.88 0.68799 97.69 97.304 97.992 -4.1861 33 19 2 0 0 0 0.54933 1 20008 20008 16.566 2.951 1 2127200 + 12369 24923 7837 7840 12609 12609 0.07727451963069143 EKSLKYLEI 9 Unmodified _EKSLKYLEI_ 0 0 0 tr|U7SJH0|U7SJH0_FUSNURibosomalRNAsmallsubunitmethyltransferaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmGPE=3SV=1 tr|U7SJH0|U7SJH0_FUSNURibosomalRNAsmallsubunitmethyltransferaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmGPE=3SV=1 tr|U7SJH0|U7SJH0_FUSNURibosomalRNAsmallsubunitmethyltransferaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmGPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21875 3 374.885018 1121.63323 0.33432 0.00012533 -0.11437 -4.2874E-05 0.21995 8.2457E-05 374.88479270084423 101.95 0.64569 97.628 97.261 97.906 -4.3208 37 18 3 0 0 0 0.70121 1 19487 19487 6.1918 0.40842 1 1315800 12370 25941 7838 7841 12610 12610 0.07727451963046406 EKSRVCSAW 9 Unmodified _EKSRVCSAW_ 0 0 0 POLQ|p.T546Sfs*41|1|0.05|ENSG00000051341|chr3:121510219-121510220|-/GGCTACTAGA|frameshift_variant POLQ|p.T546Sfs*41|1|0.05|ENSG00000051341|chr3:121510219-121510220|-/GGCTACTAGA|frameshift_variant POLQ|p.T546Sfs*41|1|0.05|ENSG00000051341|chr3:121510219-121510220|-/GGCTACTAGA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2615966796875 2 533.260933 1064.50731 -0.2104 -0.0001122 -0.35865 -0.00019126 -0.56905 -0.00030345 533.7622796524366 39.189 1.0859 36.64 36.225 37.311 -2.5491 59 30 4 0 0 0 0.58804 1 7265 7265 13.906 0.39817 1 2173500 12371 12810 7839 7842 12611 12611 -0.022359580940246815 EKSTGVVRLNT 11 Unmodified _EKSTGVVRLNT_ 0 0 0 nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;nc|ENSG00000119139|Q9UDY2-5|TJP2 nc|ENSG00000119139|Q9UDY2-4|TJP2 nc|ENSG00000119139|Q9UDY2-4|TJP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.274658203125 2 602.338227 1202.6619 NaN NaN NaN NaN NaN NaN NaN 171.27 1 171.27 170.77 171.77 0 0 0 0 0.22209 1 35271 35271 13.615 1.3742 1 12372 3061 7840 7843 12612 12612 0.06867569592191103 EKTFITEI 8 Unmodified _EKTFITEI_ 0 0 0 tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1 tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1 tr|U7T5E1|U7T5E1_FUSNU16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00032PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2750244140625 2 490.768583 979.522613 0.21131 0.00010371 0.55667 0.00027319 0.76798 0.0003769 490.76859548903155 149.74 0.69772 145.01 144.66 145.36 -4.7323 25 19 2 0 0 0 0.50387 1 29760 29760 26.884 0 1 3018200 12373 26465 7841 7844 12613 12613 0.032032319747941074 EKTLLLPDP 9 Unmodified _EKTLLLPDP_ 0 0 0 REV__ENSG00000164142|ENST00000435205|FHIP1A REV__ENSG00000164142|ENST00000435205|FHIP1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 512.822998046875 2 513.297507 1024.58046 0.671 0.00034442 -0.076554 -3.9295E-05 0.59445 0.00030513 513.7991850597955 107.25 1.3189 103.11 102.94 104.26 -4.135 68 37 2 0 0 0 0.54058 1 20818 20818 12.241 2.1667 1 2726000 + 12374 17652 7842 7845 12614 12614 0.0691549390023738 EKTSETFAVA 10 Unmodified _EKTSETFAVA_ 0 0 0 REV__GLT1D1|p.M117T|1|0.16|ENSG00000151948|chr12:128899262-128899262|T/C|missense_variant REV__GLT1D1|p.M117T|1|0.16|ENSG00000151948|chr12:128899262-128899262|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2604370117188 2 541.771854 1081.52915 1.3455 0.00072893 2.4818 0.0013446 3.8273 0.0020735 541.7714029444395 25.288 0.17699 23.64 23.545 23.722 -1.6482 5 4 2 0 0 0 0.86078 1 4431 4431 17.113 1.8644 1 150970 + 12375 23579 7843 7846 12615 12615 -0.0083487486449485 EKVEPIKVK 9 Unmodified _EKVEPIKVK_ 0 0 0 REV__WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant REV__WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0677185058594 3 357.225375 1068.6543 0.69805 0.00024936 3.9183 0.0013997 4.6163 0.0016491 357.5613569519026 27.163 0.5355 25.38 25.202 25.737 -1.7821 22 14 2 0 0 0 0.74927 1 4820 4820 13.615 6.5131 1 7512300 + 12376 25544 7844 7847 12616 12616 0.12271462062540195 EKWADQIEIE 10 Unmodified _EKWADQIEIE_ 0 0 0 REV__ENSG00000212710|ENST00000391403|CTAGE1 REV__ENSG00000212710|ENST00000391403|CTAGE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.771240234375 2 630.808968 1259.60338 NaN NaN NaN NaN NaN NaN NaN 52.41 1 49.323 48.823 49.823 -3.0876 0 0 0 2.8426 1 9641 9641 0.043787 0 1 + 12377 19630 7845 7848 12617 12617 -0.016035317729574672 EKWASRFY 8 Unmodified _EKWASRFY_ 0 0 0 nc|ENSG00000137474|Q13402-7|MYO7A nc|ENSG00000137474|Q13402-7|MYO7A nc|ENSG00000137474|Q13402-7|MYO7A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.771728515625 2 543.771991 1085.52943 NaN NaN NaN NaN NaN NaN NaN 122.37 1 117.68 117.18 118.18 -4.6873 0 0 0 0.20462 1 23497 23497 21.747 4.8044 1 12378 12347 7846 7849 12618 12618 -0.009914103539585994 EKWLKEHPG 9 Unmodified _EKWLKEHPG_ 0 0 0 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21221923828125 3 375.201341 1122.58219 NaN NaN NaN NaN NaN NaN NaN 22.14 1 20.666 20.166 21.166 -1.4742 0 0 0 0.23108 1 3770 3770 14.405 0.49933 1 12379 522 7847 7850 12619 12619 0.02580547708839731 EKWRQRIRKWR 11 Unmodified _EKWRQRIRKWR_ 0 0 0 REV__ENST00000595455.1_1_19:36244761-36245372:+|nuORF REV__ENST00000595455.1_1_19:36244761-36245372:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.781982421875 3 547.990208 1640.9488 NaN NaN NaN NaN NaN NaN NaN 49.343 1 46.462 45.962 46.962 -2.8811 0 0 0 0.23698 1 9346 9346 1.2148 1.0749 1 + 12380 19906 7848 7851 12620 12620 0.1539588832483787 EKYEKDIAA 9 Unmodified _EKYEKDIAA_ 0 0 0 ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000502313.1_1_5:77940194-77940227:-|nuORF;ENST00000522557.1_1_20:56063450-56063633:-|nuORF ENSG00000164104|ENST00000296503|HMGB2 ENSG00000164104|ENST00000296503|HMGB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2705688476562 2 533.774396 1065.53424 0.50156 0.00026772 0.57831 0.00030869 1.0799 0.00057641 534.2753878108741 21.157 0.63184 19.683 19.314 19.946 -1.4742 24 17 2 0 0 0 0.8319 1 3607 3607 7.9102 0 1 687030 12381 5508 7849 7852 12621 12621 0.004094289981367183 EKYELKSKV 9 Unmodified _EKYELKSKV_ 0 0 0 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2176513671875 3 375.216768 1122.62847 -0.14892 -5.5876E-05 1.7825 0.00066881 1.6335 0.00061293 375.217406440522 22.701 0.42405 22.701 22.536 22.96 0 28 11 3 0 0 0 0.48437 1 3838 3838 20.581 0.95498 1 1621700 12382 6373 7850 7853 12622 12622 0.07206567820276177 EKYELKSKV 9 Unmodified _EKYELKSKV_ 0 0 0 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2176513671875 3 375.216768 1122.62847 0.72809 0.00027319 1.525 0.00057219 2.2531 0.00084538 375.2172002359508 24.263 0.5548 22.709 22.533 23.088 -1.5532 21 15 2 0 0 0 0.33794 1 4204 4204 29.437 11.574 1 1164000 12383 6373 7850 7853 12623 12623 0.07206567820276177 EKYERKIEELG 11 Unmodified _EKYERKIEELG_ 0 0 0 tr|U7STN4|U7STN4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01552PE=4SV=1 tr|U7STN4|U7STN4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01552PE=4SV=1 tr|U7STN4|U7STN4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01552PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2488708496094 3 465.248908 1392.72489 NaN NaN NaN NaN NaN NaN NaN 71.303 1 68.054 67.554 68.554 -3.2492 0 0 0 0.22632 1 13880 13880 0.58532 0 1 12384 26162 7851 7854 12624 12624 0.044240905895549076 EKYKFFAFWK 10 Unmodified _EKYKFFAFWK_ 0 0 0 REV__CTSC|p.V126Gfs*3|1|0.2|ENSG00000109861|chr11:88312496-88312497|-/C|frameshift_variant REV__CTSC|p.V126Gfs*3|1|0.2|ENSG00000109861|chr11:88312496-88312497|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24896240234375 3 465.248291 1392.72304 NaN NaN NaN NaN NaN NaN NaN 113.59 1 113.59 113.09 114.09 0 0 0 0 2.8426 1 22337 22337 1.9064 1.3211 1 + 12385 13610 7852 7855 12625 12625 0.042391263622448605 EKYKKQKWQRF 11 Unmodified _EKYKKQKWQRF_ 0 0 0 REV__KIF4B|p.D669Y|1|0.07|ENSG00000226650|chr5:155015864-155015864|G/T|missense_variant REV__KIF4B|p.D669Y|1|0.07|ENSG00000226650|chr5:155015864-155015864|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7021484375 3 523.628054 1567.86233 0.18957 9.9266E-05 1.8608 0.00097438 2.0504 0.0010736 523.9629341487956 147.79 0.17447 147.79 147.68 147.85 0 6 4 2 0 0 0 0.96219 1 29559 29559 1.1098 0.6038 1 2175200 + 12386 23717 7853 7856 12626 12626 0.10111463979637847 EKYLKEVL 8 Unmodified _EKYLKEVL_ 0 0 0 ENSG00000110721|ENST00000265689|CHKA;nc|ENSG00000110721|P35790-2|CHKA;CHKA|p.R262I|1|0.38|ENSG00000110721|chr11:68070273-68070273|C/A|missense_variant ENSG00000110721|ENST00000265689|CHKA ENSG00000110721|ENST00000265689|CHKA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.1966552734375 3 341.202459 1020.58555 -0.6809 -0.00023232 0.56824 0.00019389 -0.11265 -3.8438E-05 341.20257463419193 62.421 0.7663 62.421 62.073 62.839 0 58 21 4 0 0 0 8448 1 12050 12050 10.074 0 1 18777000 12387 2585 7854 7857 12627 12627 0.07607797762852897 EKYRELETKN 10 Unmodified _EKYRELETKN_ 0 0 0 REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2296142578125 3 437.229736 1308.66738 0.12394 5.4189E-05 1.8525 0.00080997 1.9764 0.00086416 437.56533525876023 64.911 0.5155 61.628 61.21 61.726 -3.2832 20 14 2 0 0 0 0.73657 1 12172 12172 7.4771 0.84669 1 721360 + 12388 18144 7855 7858 12628 12628 0.025392483840050772 EKYRELETKN 10 Unmodified _EKYRELETKN_ 0 0 0 REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21722412109375 3 437.229736 1308.66738 0.12394 5.4189E-05 1.8525 0.00080997 1.9764 0.00086416 437.56533525876023 64.911 0.5155 61.628 61.21 61.726 -3.2832 20 14 2 0 0 0 0.91149 1 12159 12159 7.4771 6.3673 1 721360 + 12389 18144 7855 7858 12629 12629 0.025392483840050772 ELAARETQK 9 Unmodified _ELAARETQK_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000590856.1_1_17:73826107-73826739:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6942138671875 2 523.285463 1044.55637 NaN NaN NaN NaN NaN NaN NaN 58.318 1 55.408 54.908 55.908 -2.9105 0 0 0 0.23508 1 11199 11199 10.074 0.72649 1 12390 1843 7856 7859 12630 12630 0.035876534665476356 ELACVRQP 8 Unmodified _ELACVRQP_ 0 0 0 REV__ENSG00000167291|ENST00000310924|TBC1D16 REV__ENSG00000167291|ENST00000310924|TBC1D16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23858642578125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 170.15 1 165.36 164.86 165.86 -4.7898 0 0 0 0.21323 1 34516 34516 14.582 0 1 + 12391 17915 7857 7860 12631 12631 0.003732718485366604 ELADTIAWY 9 Unmodified _ELADTIAWY_ 0 0 0 REV__HTR1D|p.P173Rfs*18|1|0.14|ENSG00000179546|chr1:23193702-23193702|G/-|frameshift_variant REV__HTR1D|p.P173Rfs*18|1|0.14|ENSG00000179546|chr1:23193702-23193702|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2728271484375 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 91.706 1 87.611 87.111 88.111 -4.0946 0 0 0 0.1124 1 17466 17466 36.044 1.9418 1 + 12392 18659 7858 7861 12632 12632 -0.02425956030560883 ELAEHGIF 8 Unmodified _ELAEHGIF_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2323913574219 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 127.2 1 122.58 122.08 123.08 -4.6172 0 0 0 0.17894 1 25082 25082 32.117 0 1 12393 5186 7859 7862 12633 12633 -0.010864770279567892 ELAEYCKT 8 Unmodified _ELAEYCKT_ 0 0 0 REV__CCDC77|p.R405C|1|0.27|ENSG00000120647|chr12:440889-440889|C/T|missense_variant REV__CCDC77|p.R405C|1|0.27|ENSG00000120647|chr12:440889-440889|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7239074707031 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 42.405 1 39.686 39.186 40.186 -2.7191 0 0 0 0.19492 1 7932 7932 26.341 0 1 + 12394 13303 7860 7863 12634 12634 -0.04741560345121343 ELAGRPMR 8 Unmodified _ELAGRPMR_ 0 0 0 nc|ENSG00000100461|Q86U06-4|RBM23;nc|ENSG00000100461|Q86U06-5|RBM23;nc|ENSG00000100461|Q86U06-2|RBM23;ENSG00000100461|ENST00000359890|RBM23 nc|ENSG00000100461|Q86U06-4|RBM23 nc|ENSG00000100461|Q86U06-4|RBM23 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25396728515625 2 465.252911 928.49127 NaN NaN NaN NaN NaN NaN NaN 94.495 1 90.505 90.005 91.005 -3.9907 0 0 0 0.23025 1 18518 18518 1.7423 0 1 12395 1982 7861 7864 12635 12635 0.02416380459726497 ELAMQVTSAH 10 Unmodified _ELAMQVTSAH_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7966918945312 2 543.766049 1085.51754 NaN NaN NaN NaN NaN NaN NaN 15.891 1 14.538 14.038 15.038 -1.3534 0 0 0 0.22588 1 2222 2222 13.042 2.9685 1 + 12396 14106;24761 7862 7865 12636 12636 -0.021793951594418104 ELAPDSNDGY 10 Unmodified _ELAPDSNDGY_ 0 0 0 REV__nc|ENSG00000080845|Q9Y2H0-3|DLGAP4 REV__nc|ENSG00000080845|Q9Y2H0-3|DLGAP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2650756835938 2 540.727643 1079.44073 0.27502 0.00014871 -1.66 -0.00089763 -1.385 -0.00074892 540.7268247183257 61.636 0.58651 58.397 58.103 58.69 -3.2395 27 16 2 0 0 0 0.71097 1 11489 11489 10.074 1.3285 1 1880800 + 12397 14419 7863 7866 12637 12637 -0.09580915174956317 ELAQQVQQV 9 Unmodified _ELAQQVQQV_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2815551757812 2 521.780013 1041.54547 -0.18379 -9.5899E-05 0.3319 0.00017318 0.1481 7.7277E-05 521.7801201206489 63.831 0.63006 60.834 60.555 61.186 -2.9975 44 17 3 0 0 0 0.10573 2 12355 12349;12355 53.833 5.7819 1 6650900 12398 803 7864 7867 12638;12639 12639 0.026362510922808724 ELAQQVQQV 9 Unmodified _ELAQQVQQV_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2706909179688 2 521.780013 1041.54547 -0.52197 -0.00027235 0.74213 0.00038723 0.22016 0.00011488 521.7803975507297 64.377 0.70448 60.919 60.52 61.225 -3.4581 45 19 3 0 0 0 0.12505 1 12020 12020 47.749 3.8904 1 5647100 12399 803 7864 7867 12640 12640 0.026362510922808724 ELAQQVQQV 9 Unmodified _ELAQQVQQV_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2606201171875 2 521.780013 1041.54547 0.32933 0.00017184 -0.30459 -0.00015893 0.02474 1.2909E-05 521.7798052078427 64.13 0.55932 60.874 60.606 61.165 -3.2567 46 15 4 0 0 0 0.09885 2 12053 12010;12053 56.177 10.728 1 4940100 12400 803 7864 7867 12641;12642 12642 0.026362510922808724 ELAQQVQQV 9 Unmodified _ELAQQVQQV_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.780013 1041.54547 -0.10259 -5.3529E-05 0.5394 0.00028145 0.43681 0.00022792 521.7801980313048 60.87 0.59794 60.87 60.591 61.189 0 -0.0037078 0.00019896 NaN 56.177 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4417100 12401 803 7864 7867 0.026362510922808724 ELARLLSGAN 10 Unmodified _ELARLLSGAN_ 0 0 0 REV__ENST00000489118.1_1_3:41288422-41292488:-|nuORF REV__ENST00000489118.1_1_3:41288422-41292488:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2804565429688 2 522.29583 1042.57711 -0.76809 -0.00040117 0.83948 0.00043845 0.071385 3.7284E-05 522.2961562392844 107.77 0.41463 103.35 103.02 103.44 -4.4121 16 11 2 0 0 0 0.70381 1 20675 20675 10.8 0.72558 1 1303100 + 12402 17992 7865 7868 12643 12643 0.05752243846268357 ELASRFPAA 9 Unmodified _ELASRFPAA_ 0 0 0 REV__ENSG00000175868|ENST00000324229|CALCB REV__ENSG00000175868|ENST00000324229|CALCB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25274658203125 2 481.258717 960.50288 0.016814 8.0919E-06 0.097695 4.7017E-05 0.11451 5.5108E-05 481.2586136307896 83.837 0.58347 80.229 79.977 80.56 -3.6079 34 16 3 0 0 0 0.12505 1 16363 16363 47.749 0.1543 1 2999200 + 12403 15209 7866 7869 12644 12644 0.02104900754704886 ELATWGEIY 9 Unmodified _ELATWGEIY_ 0 0 0 REV__KCNK10|p.G286Efs*14|1|0.18|ENSG00000100433|chr14:88188106-88188106|C/-|frameshift_variant REV__KCNK10|p.G286Efs*14|1|0.18|ENSG00000100433|chr14:88188106-88188106|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2836303710938 2 541.263665 1080.51278 0.27608 0.00014943 -2.5684 -0.0013902 -2.2923 -0.0012407 541.2625290809766 64.827 0.63358 61.369 60.837 61.471 -3.4581 19 17 2 0 0 0 0.41781 1 12109 12109 24.674 0.65332 1 1141200 + 12404 14713 7867 7870 12645 12645 -0.024259560305381456 ELATWGEIY 9 Unmodified _ELATWGEIY_ 0 0 0 REV__KCNK10|p.G286Efs*14|1|0.18|ENSG00000100433|chr14:88188106-88188106|C/-|frameshift_variant REV__KCNK10|p.G286Efs*14|1|0.18|ENSG00000100433|chr14:88188106-88188106|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.261962890625 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 64.529 1 61.259 60.759 61.759 -3.2702 0 0 0 0.21848 1 12116 12116 18.135 2.2878 1 + 12405 14713 7867 7870 12646 12646 -0.024259560305381456 ELATWTPTEFR 11 Unmodified _ELATWTPTEFR_ 0 0 0 ENSG00000188015|ENST00000368713|S100A3 ENSG00000188015|ENST00000368713|S100A3 ENSG00000188015|ENST00000368713|S100A3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 450.8937683105469 3 450.894465 1349.66157 NaN NaN NaN NaN NaN NaN NaN 156.26 1 156.26 155.76 156.76 0 0 0 0 0.22632 1 31346 31346 0.026206 0.025642 1 12406 7142 7868 7871 12647 12647 0.0007214987228962855 ELAVAIRKSY 10 Unmodified _ELAVAIRKSY_ 0 0 0 REV__nc|ENSG00000100462|O14744-3|PRMT5 REV__nc|ENSG00000100462|O14744-3|PRMT5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33935546875 2 575.334956 1148.65536 0.30811 0.00017726 1.9906 0.0011453 2.2987 0.0013225 575.3344260981484 64.851 0.65692 61.568 61.103 61.76 -3.2832 30 18 3 0 0 0 0.744 1 12164 12164 6.7232 0.51738 1 1236200 + 12407 14714 7869 7872 12648 12648 0.0869767643148407 ELCEEWGCLY 10 Unmodified _ELCEEWGCLY_ 0 0 0 ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;ZFYVE26|p.D2513Mfs*3|1|0.29|ENSG00000072121|chr14:67748519-67748519|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ZFYVE26|p.P1734Lfs*10|1|0.08|ENSG00000072121|chr14:67775880-67775880|G/-|frameshift_variant ENST00000554523.5_1_14:68228796-68282710:-|nuORF ENST00000554523.5_1_14:68228796-68282710:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7525024414062 2 622.75175 1243.48895 NaN NaN NaN NaN NaN NaN NaN 156.02 1 150.77 150.27 151.27 -5.2526 0 0 0 0.22588 1 30258 30258 7.2892 1.5574 1 12408 1458 7870 7873 12649 12649 -0.12305880850908579 ELCHHHQEF 9 Unmodified _ELCHHHQEF_ 0 0 0 REV__NUP107|p.R618H|1|0.18|ENSG00000111581|chr12:68731228-68731228|G/A|missense_variant REV__NUP107|p.R618H|1|0.18|ENSG00000111581|chr12:68731228-68731228|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2538452148438 2 590.25364 1178.49273 NaN NaN NaN NaN NaN NaN NaN 81.486 1 77.929 77.429 78.429 -3.557 0 0 0 0.23508 1 15913 15913 7.9102 0 1 + 12409 24390 7871 7874 12650 12650 -0.08938030242188688 ELCRDIPQL 9 Unmodified _ELCRDIPQL_ 0 0 0 ENSG00000153060|ENST00000283025|TEKT5 ENSG00000153060|ENST00000283025|TEKT5 ENSG00000153060|ENST00000283025|TEKT5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7843017578125 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 174.79 1 169.91 169.41 170.41 -4.8845 0 0 0 0.22251 1 34734 34734 16.942 1.0951 1 12410 4954 7872 7875 12651 12651 0.014574817372704274 ELDCEEINN 9 Unmodified _ELDCEEINN_ 0 0 0 REV__ITCH-PIGU|2|fusion REV__ITCH-PIGU|2|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.14404296875 3 360.150095 1077.42845 NaN NaN NaN NaN NaN NaN NaN 83.281 1 79.408 78.908 79.908 -3.8736 0 0 0 0.23508 1 15818 15818 0.96228 0.26461 1 + 12411 14385 7873 7876 12652 12652 -0.10716274909646017 ELDDLSYS 8 Unmodified _ELDDLSYS_ 0 0 0 REV__nc|ENSG00000050405|Q9UHB6-2|LIMA1 REV__nc|ENSG00000050405|Q9UHB6-2|LIMA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 471.73931884765625 2 471.208555 940.402557 -0.0091339 -4.304E-06 -0.059223 -2.7906E-05 -0.068357 -3.221E-05 471.2085112115652 98.598 1.0768 94.466 93.915 94.992 -4.1326 62 30 3 0 0 0 0.53679 1 19324 19324 23.722 0 1 5137100 + 12412 14085 7874 7877 12653 12653 -0.07002801089606692 ELDECYERF 9 Unmodified _ELDECYERF_ 0 0 0 nc|ENSG00000153487|Q9UK53-4|ING1;nc|ENSG00000153487|Q9UK53-5|ING1;ENSG00000153487|ENST00000333219|ING1;nc|ENSG00000153487|Q9UK53|ING1 nc|ENSG00000153487|Q9UK53-4|ING1 nc|ENSG00000153487|Q9UK53-4|ING1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2747192382812 2 602.252971 1202.49139 NaN NaN NaN NaN NaN NaN NaN 73.37 1 69.693 69.193 70.193 -3.6764 0 0 0 0.23508 1 13864 13864 7.9102 0.62092 1 12413 4971 7875 7878 12654 12654 -0.10175709121608634 ELDEETSTY 9 Unmodified _ELDEETSTY_ 0 0 0 REV__RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant REV__RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.777099609375 2 543.727309 1085.44006 NaN NaN NaN NaN NaN NaN NaN 125.11 1 120.34 119.84 120.84 -4.7681 0 0 0 0.19691 1 24018 24018 0.40827 0.2854 1 + 12414 15710 7876 7879 12655 12655 -0.09923754614646896 ELDEETSTY 9 Unmodified _ELDEETSTY_ 0 0 0 REV__RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant REV__RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7705688476562 2 543.727309 1085.44006 NaN NaN NaN NaN NaN NaN NaN 125.15 1 120.38 119.88 120.88 -4.7681 0 0 0 0.23508 1 24024 24024 12.532 4.6214 1 + 12415 15710 7876 7879 12656 12656 -0.09923754614646896 ELDELTKK 8 Unmodified _ELDELTKK_ 0 0 0 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27642822265625 2 488.27149 974.528426 0.47037 0.00022967 0.14036 6.8535E-05 0.61074 0.00029821 488.2712607827711 90.752 0.87131 86.708 86.34 87.211 -4.0443 97 24 5 0 0 0 0.25036 3 17265 17265;17300;17307 40.449 14.107 1 7038600 + 12416 16771 7877 7880 12657;12658;12659 12657 0.040143304864727725 ELDELTKK 8 Unmodified _ELDELTKK_ 0 0 0 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2751159667969 2 488.27149 974.528426 -0.093557 -4.5681E-05 0.30648 0.00014965 0.21293 0.00010397 488.27153642458717 90.486 0.79846 86.708 86.329 87.127 -3.7779 87 22 5 0 0 0 0.25036 2 17309 17297;17309 40.449 14.107 1 7970000 + 12417 16771 7877 7880 12660;12661 12661 0.040143304864727725 ELDELTKK 8 Unmodified _ELDELTKK_ 0 0 0 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 488.27149 974.528426 0.11581 5.6547E-05 0.30907 0.00015091 0.42488 0.00020746 488.27142546404986 86.903 0.79655 86.903 86.458 87.255 0 0.13026 5.0269E-05 NaN 40.449 77 22 5 NaN NaN NaN NaN 0 NaN NaN 0 8047800 + 12418 16771 7877 7880 0.040143304864727725 ELDELTKK 8 Unmodified _ELDELTKK_ 0 0 0 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 488.27149 974.528426 0.47037 0.00022967 0.14036 6.8535E-05 0.61074 0.00029821 488.2712607827711 90.752 0.87131 86.708 86.34 87.211 -4.0443 -0.065444 -0.00011449 NaN 40.449 97 24 5 NaN NaN NaN NaN 0 NaN NaN 0 7038600 + 12419 16771 7877 7880 0.040143304864727725 ELDELTKK 8 Unmodified _ELDELTKK_ 0 0 0 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 488.27149 974.528426 -0.093557 -4.5681E-05 0.30648 0.00014965 0.21293 0.00010397 488.27153642458717 90.486 0.79846 86.708 86.329 87.127 -3.7779 -0.064812 4.774E-05 NaN 40.449 87 22 5 NaN NaN NaN NaN 0 NaN NaN 0 7970000 + 12420 16771 7877 7880 0.040143304864727725 ELDEQSPRI 9 Unmodified _ELDEQSPRI_ 0 0 0 REV__TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant REV__TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.776123046875 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 145.37 1 140.42 139.92 140.92 -4.9445 0 0 0 0.23508 1 28103 28103 10.824 0.75 1 + 12421 14245 7878 7881 12662 12662 -0.004043566329301029 ELDHERMSY 9 Unmodified _ELDHERMSY_ 0 0 0 nc|ENSG00000107643|P45983-3|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-5|MAPK8;MAPK10|p.M159I|1|0.11|ENSG00000109339|chr4:86101981-86101981|C/T|missense_variant;nc|ENSG00000109339|P53779-3|MAPK10;ENSG00000050748|ENST00000452135|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;nc|ENSG00000109339|P53779-2|MAPK10;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;ENST00000397072.7_1_5:179665329-179706839:-|nuORF;MAPK8|p.N205Tfs*45|1|0.07|ENSG00000107643|chr10:48420315-48420315|A/-|frameshift_variant;nc|ENSG00000050748|P45984-5|MAPK9;ENST00000476134.1_1_10:49609691-49618268:+|nuORF;ENST00000523135.1_1_5:179680521-179691830:-|nuORF;ENSG00000109339|ENST00000641462|MAPK10 nc|ENSG00000107643|P45983-3|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2594604492188 2 590.258588 1178.50262 0.33049 0.00019507 0.32146 0.00018975 0.65195 0.00038482 590.2585314403005 42.703 0.3561 39.984 39.84 40.196 -2.7191 10 9 2 0 0 0 0.11828 2 7988 7988;8035 49.554 31.408 1 1651700 12422 2432 7879 7882 12663;12664 12663 -0.07948887027441742 ELDHERMSY 9 Unmodified _ELDHERMSY_ 0 0 0 nc|ENSG00000107643|P45983-3|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-5|MAPK8;MAPK10|p.M159I|1|0.11|ENSG00000109339|chr4:86101981-86101981|C/T|missense_variant;nc|ENSG00000109339|P53779-3|MAPK10;ENSG00000050748|ENST00000452135|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;nc|ENSG00000109339|P53779-2|MAPK10;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;ENST00000397072.7_1_5:179665329-179706839:-|nuORF;MAPK8|p.N205Tfs*45|1|0.07|ENSG00000107643|chr10:48420315-48420315|A/-|frameshift_variant;nc|ENSG00000050748|P45984-5|MAPK9;ENST00000476134.1_1_10:49609691-49618268:+|nuORF;ENST00000523135.1_1_5:179680521-179691830:-|nuORF;ENSG00000109339|ENST00000641462|MAPK10 nc|ENSG00000107643|P45983-3|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2583618164062 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 42.631 1 39.98 39.48 40.48 -2.651 0 0 0 0.11838 1 7679 7679 34.932 16.786 1 12423 2432 7879 7882 12665 12665 -0.07948887027441742 ELDHERMSY 9 Unmodified _ELDHERMSY_ 0 0 0 nc|ENSG00000107643|P45983-3|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-5|MAPK8;MAPK10|p.M159I|1|0.11|ENSG00000109339|chr4:86101981-86101981|C/T|missense_variant;nc|ENSG00000109339|P53779-3|MAPK10;ENSG00000050748|ENST00000452135|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;nc|ENSG00000109339|P53779-2|MAPK10;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;ENST00000397072.7_1_5:179665329-179706839:-|nuORF;MAPK8|p.N205Tfs*45|1|0.07|ENSG00000107643|chr10:48420315-48420315|A/-|frameshift_variant;nc|ENSG00000050748|P45984-5|MAPK9;ENST00000476134.1_1_10:49609691-49618268:+|nuORF;ENST00000523135.1_1_5:179680521-179691830:-|nuORF;ENSG00000109339|ENST00000641462|MAPK10 nc|ENSG00000107643|P45983-3|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2597045898438 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 42.859 1 40.208 39.708 40.708 -2.651 0 0 0 0.1543 1 7724 7724 29.841 15.935 1 12424 2432 7879 7882 12666 12666 -0.07948887027441742 ELDHERMSY 9 Unmodified _ELDHERMSY_ 0 0 0 nc|ENSG00000107643|P45983-3|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-5|MAPK8;MAPK10|p.M159I|1|0.11|ENSG00000109339|chr4:86101981-86101981|C/T|missense_variant;nc|ENSG00000109339|P53779-3|MAPK10;ENSG00000050748|ENST00000452135|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;nc|ENSG00000109339|P53779-2|MAPK10;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;ENST00000397072.7_1_5:179665329-179706839:-|nuORF;MAPK8|p.N205Tfs*45|1|0.07|ENSG00000107643|chr10:48420315-48420315|A/-|frameshift_variant;nc|ENSG00000050748|P45984-5|MAPK9;ENST00000476134.1_1_10:49609691-49618268:+|nuORF;ENST00000523135.1_1_5:179680521-179691830:-|nuORF;ENSG00000109339|ENST00000641462|MAPK10 nc|ENSG00000107643|P45983-3|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2572631835938 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 42.619 1 40.013 39.513 40.513 -2.606 0 0 0 0.055781 1 7669 7669 49.554 26.818 1 12425 2432 7879 7882 12667 12667 -0.07948887027441742 ELDIGISATY 10 Unmodified _ELDIGISATY_ 0 0 0 ENSG00000139344|ENST00000266736|AMDHD1 ENSG00000139344|ENST00000266736|AMDHD1 ENSG00000139344|ENST00000266736|AMDHD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2738037109375 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 116.55 1 111.96 111.46 112.46 -4.5815 0 0 0 2.8426 1 22365 22365 4.6586 3.4438 1 12426 4242 7880 7883 12668 12668 -0.0031399072170188447 ELDKLSQS 8 Unmodified _ELDKLSQS_ 0 0 0 REV__SYCP2|p.S1456Afs*9|1|0.28|ENSG00000196074|chr20:59865820-59865820|T/-|frameshift_variant REV__SYCP2|p.S1456Afs*9|1|0.28|ENSG00000196074|chr20:59865820-59865820|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2410583496094 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 41.128 1 38.494 37.994 38.994 -2.6348 0 0 0 0.22628 1 7677 7677 20.454 0 1 + 12427 19210 7881 7884 12669 12669 0.0033318441828669165 ELDKLTTLY 9 Unmodified _ELDKLTTLY_ 0 0 0 nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA;CDC42BPA|p.A1183*|1|0.41|ENSG00000143776|chr1:227031454-227031461|TGTCTGCT/-|frameshift_variant;nc|ENSG00000143776|Q5VT25-3|CDC42BPA nc|ENSG00000143776|Q5VT25-4|CDC42BPA nc|ENSG00000143776|Q5VT25-4|CDC42BPA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7703247070312 2 548.300247 1094.58594 0.31892 0.00017487 -0.41889 -0.00022968 -0.099968 -5.4812E-05 548.2996273712832 118.17 0.85116 118.17 117.69 118.54 0 51 23 3 0 0 0 0.13813 1 23288 23288 62.573 3.8939 1 4789900 12428 4518 7882 7885 12670 12670 0.042431726920540314 ELDLNNKKI 9 Unmodified _ELDLNNKKI_ 0 0 0 tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1 tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1 tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7821044921875 2 543.811313 1085.60807 0.3348 0.00018207 0.071287 3.8766E-05 0.40609 0.00022083 544.3128044170626 134.39 0.48952 134.39 134.11 134.6 0 18 13 2 0 0 0 0.069179 1 26589 26589 10.899 1.986 1 2357500 12429 26432 7883 7886 12671 12671 0.06869397160471635 ELDLNNKKI 9 Unmodified _ELDLNNKKI_ 0 0 0 tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1 tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1 tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7772827148438 2 543.811313 1085.60807 0.33813 0.00018388 -0.055895 -3.0396E-05 0.28223 0.00015348 543.811069109878 139.12 0.59798 134.27 133.93 134.53 -4.8492 26 16 2 0 0 0 0.23959 1 26792 26792 10.899 0 1 2358400 12430 26432 7883 7886 12672 12672 0.06869397160471635 ELDLNRKQP 9 Unmodified _ELDLNRKQP_ 0 0 0 REV__ENSG00000163040|ENST00000409856|CCDC74A REV__ENSG00000163040|ENST00000409856|CCDC74A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 556.614501953125 2 556.806562 1111.59857 0.19661 0.00010947 1.4739 0.00082067 1.6705 0.00093014 557.3072427420582 172.28 0.17499 167.39 167.26 167.43 -4.8977 6 4 2 0 0 0 0.84208 1 34146 34146 3.9444 2.1002 1 3358900 + 12431 17092 7884 7887 12673 12673 0.04723628874944552 ELDLTYGNRY 10 Unmodified _ELDLTYGNRY_ 0 0 0 ENST00000490651.1_1_X:153760401-153761015:-|nuORF;ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD ENST00000490651.1_1_X:153760401-153761015:-|nuORF ENST00000490651.1_1_X:153760401-153761015:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7821655273438 2 622.30131 1242.58807 0.9661 0.0006012 -0.84065 -0.00052314 0.12544 7.8064E-05 622.3007273851489 102.17 0.66093 97.987 97.646 98.307 -4.1861 37 18 3 0 0 0 0.00016552 2 20061 20061;20080 145.13 107.16 1 5364700 12432 5238 7885 7888 12674;12675 12674 -0.023523985701331185 ELDLTYGNRY 10 Unmodified _ELDLTYGNRY_ 0 0 0 ENST00000490651.1_1_X:153760401-153761015:-|nuORF;ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD ENST00000490651.1_1_X:153760401-153761015:-|nuORF ENST00000490651.1_1_X:153760401-153761015:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7537841796875 2 622.30131 1242.58807 0.55186 0.00034342 -0.14547 -9.0529E-05 0.40639 0.00025289 622.3012037089587 102.28 0.57981 97.955 97.64 98.22 -4.3208 30 16 2 0 0 0 0.00016552 1 19553 19553 145.13 86.451 1 5287100 12433 5238 7885 7888 12676 12676 -0.023523985701331185 ELDLTYGNRY 10 Unmodified _ELDLTYGNRY_ 0 0 0 ENST00000490651.1_1_X:153760401-153761015:-|nuORF;ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD ENST00000490651.1_1_X:153760401-153761015:-|nuORF ENST00000490651.1_1_X:153760401-153761015:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 622.30131 1242.58807 0.4836 0.00030094 0.31977 0.00019899 0.80337 0.00049994 622.3010892511099 97.781 0.54715 97.781 97.507 98.054 0 -0.15083 0.00090853 NaN 145.13 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2701900 12434 5238 7885 7888 -0.023523985701331185 ELDPDNETY 9 Unmodified _ELDPDNETY_ 0 0 0 ENSG00000104969|ENST00000221566|SGTA ENSG00000104969|ENST00000221566|SGTA ENSG00000104969|ENST00000221566|SGTA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.772216796875 2 548.227476 1094.4404 0.15671 8.5914E-05 0.11935 6.5431E-05 0.27606 0.00015135 548.2275009782569 56.335 0.7728 56.335 55.938 56.71 0 57 21 3 0 0 0 0.086188 1 10757 10757 65.235 29.108 1 5444700 12435 2271 7886 7889 12677 12677 -0.1030433489479492 ELDPDNETY 9 Unmodified _ELDPDNETY_ 0 0 0 ENSG00000104969|ENST00000221566|SGTA ENSG00000104969|ENST00000221566|SGTA ENSG00000104969|ENST00000221566|SGTA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77294921875 2 548.227476 1094.4404 0.14548 7.9757E-05 -0.19382 -0.00010626 -0.04834 -2.6501E-05 548.2274373864537 59.551 1.0132 56.617 56.122 57.135 -2.9333 84 28 5 0 0 0 0.061087 1 11400 11400 71.922 29.828 1 9945600 12436 2271 7886 7889 12678 12678 -0.1030433489479492 ELDPDNETY 9 Unmodified _ELDPDNETY_ 0 0 0 ENSG00000104969|ENST00000221566|SGTA ENSG00000104969|ENST00000221566|SGTA ENSG00000104969|ENST00000221566|SGTA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7716064453125 2 548.227476 1094.4404 0.1128 6.1839E-05 0.0336 1.8421E-05 0.1464 8.026E-05 548.2274640449896 59.847 0.77003 56.533 56.209 56.979 -3.3139 53 21 3 0 0 0 0.10047 1 11110 11110 71.922 49.186 1 7592600 12437 2271 7886 7889 12679 12679 -0.1030433489479492 ELDPDNETY 9 Unmodified _ELDPDNETY_ 0 0 0 ENSG00000104969|ENST00000221566|SGTA ENSG00000104969|ENST00000221566|SGTA ENSG00000104969|ENST00000221566|SGTA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7721557617188 2 548.227476 1094.4404 0.20812 0.0001141 0.00020303 1.1131E-07 0.20832 0.00011421 548.2274220777687 59.866 0.98714 56.643 56.184 57.171 -3.2237 64 27 3 0 0 0 0.36365 1 11146 11146 20.12 19.855 1 6979800 12438 2271 7886 7889 12680 12680 -0.1030433489479492 ELDPTNMTY 9 Unmodified _ELDPTNMTY_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7952270507812 2 542.23679 1082.45903 0.24555 0.00013314 -0.23198 -0.00012579 0.013569 7.3575E-06 542.23671078684 101.26 1.0068 97.103 96.666 97.673 -4.1594 95 28 4 0 0 0 0.13708 1 19915 19915 46.021 16.939 1 31888000 12439 5909 7887 7890 12681 12681 -0.07890496524601076 ELDPTNMTY 9 Unmodified _ELDPTNMTY_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.23679 1082.45903 0.32355 0.00017544 -0.37972 -0.0002059 -0.056168 -3.0456E-05 542.2366432513055 96.872 0.94321 96.872 96.421 97.364 0 -0.18462 -6.8218E-06 NaN 46.021 63 26 3 NaN NaN NaN NaN 0 NaN NaN 0 21955000 12440 5909 7887 7890 -0.07890496524601076 ELDPTNMTY 9 Unmodified _ELDPTNMTY_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.23679 1082.45903 0.34554 0.00018737 -0.32309 -0.00017519 0.022451 1.2174E-05 542.2366549604886 101.46 0.95847 97.136 96.714 97.673 -4.3208 0.079317 5.4593E-05 NaN 46.021 89 27 4 NaN NaN NaN NaN 0 NaN NaN 0 28729000 12441 5909 7887 7890 -0.07890496524601076 ELDPTNMTY 9 Unmodified _ELDPTNMTY_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.23679 1082.45903 0.47628 0.00025826 -0.58291 -0.00031608 -0.10663 -5.7818E-05 542.2365448008019 101.11 1.0785 97.116 96.653 97.731 -3.9895 0.059163 -0.00022718 NaN 46.021 95 30 5 NaN NaN NaN NaN 0 NaN NaN 0 23483000 12442 5909 7887 7890 -0.07890496524601076 ELDRFMHYY 9 Unmodified _ELDRFMHYY_ 0 0 0 ENST00000422095.1_3_7:92000906-92025787:+|nuORF;ENSG00000001629|ENST00000265742|ANKIB1 ENST00000422095.1_3_7:92000906-92025787:+|nuORF ENST00000422095.1_3_7:92000906-92025787:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25311279296875 3 425.193858 1272.55974 -0.27038 -0.00011496 0.55907 0.00023771 0.2887 0.00012275 425.19410990081644 113.72 0.73383 109.26 108.83 109.56 -4.4539 62 20 4 0 0 0 0.56623 1 22405 22405 27.629 18.877 1 10327000 12443 959 7888 7891 12682 12682 -0.06563419751068977 ELDRFMHYY 9 Unmodified _ELDRFMHYY_ 0 0 0 ENST00000422095.1_3_7:92000906-92025787:+|nuORF;ENSG00000001629|ENST00000265742|ANKIB1 ENST00000422095.1_3_7:92000906-92025787:+|nuORF ENST00000422095.1_3_7:92000906-92025787:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2522277832031 3 425.193858 1272.55974 0.054962 2.3369E-05 0.19107 8.1241E-05 0.24603 0.00010461 425.19389880530014 113.68 0.73083 109.16 108.78 109.52 -4.5259 51 20 3 0 0 0 0.35202 1 21802 21802 45.7 33.472 1 8486100 12444 959 7888 7891 12683 12683 -0.06563419751068977 ELDRFMHYY 9 Unmodified _ELDRFMHYY_ 0 0 0 ENST00000422095.1_3_7:92000906-92025787:+|nuORF;ENSG00000001629|ENST00000265742|ANKIB1 ENST00000422095.1_3_7:92000906-92025787:+|nuORF ENST00000422095.1_3_7:92000906-92025787:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23822021484375 3 425.193858 1272.55974 0.29056 0.00012355 -0.14938 -6.3515E-05 0.14118 6.003E-05 425.1937585856075 113.34 0.77177 109.06 108.7 109.48 -4.2725 58 21 3 0 0 0 0.39339 1 21832 21832 43.772 39.056 1 7072800 12445 959 7888 7891 12684 12684 -0.06563419751068977 ELDRFMHYY 9 Unmodified _ELDRFMHYY_ 0 0 0 ENST00000422095.1_3_7:92000906-92025787:+|nuORF;ENSG00000001629|ENST00000265742|ANKIB1 ENST00000422095.1_3_7:92000906-92025787:+|nuORF ENST00000422095.1_3_7:92000906-92025787:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 425.193858 1272.55974 0.21121 8.9807E-05 -0.049337 -2.0978E-05 0.16188 6.8829E-05 425.1938079191641 108.99 0.70029 108.99 108.66 109.36 0 -0.12732 -0.00021484 NaN 45.7 54 19 4 NaN NaN NaN NaN 0 NaN NaN 0 6469300 12446 959 7888 7891 -0.06563419751068977 ELDSGAAVGP 10 Unmodified _ELDSGAAVGP_ 0 0 0 REV__ENST00000283635.7_2_2:87016528-87018429:-|nuORF REV__ENST00000283635.7_2_2:87016528-87018429:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2245788574219 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 28.921 1 27.165 26.665 27.665 -1.7552 0 0 0 0.20769 1 4900 4900 26.884 3.7352 1 + 12447 20323 7889 7892 12685 12685 -0.0261138861579866 ELDSHLSGV 9 Unmodified _ELDSHLSGV_ 0 0 0 REV__NOMO1|p.P842S|1|0.33|ENSG00000103512|chr16:14876671-14876671|C/T|missense_variant REV__NOMO1|p.P842S|1|0.33|ENSG00000103512|chr16:14876671-14876671|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73773193359375 2 478.737814 955.461075 0.20592 9.8582E-05 -0.19444 -9.3085E-05 0.011482 5.497E-06 478.7377464516896 44.193 0.40545 44.193 43.951 44.357 0 16 11 2 0 0 0 0.58804 1 8258 8258 13.906 0 1 595830 + 12448 24374 7890 7893 12686 12686 -0.01843699724452108 ELDTNPGALL 10 Unmodified _ELDTNPGALL_ 0 0 0 REV__nc|ENSG00000054611|Q8WUA7-4|TBC1D22A REV__nc|ENSG00000054611|Q8WUA7-4|TBC1D22A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2581787109375 2 521.774396 1041.53424 -0.29883 -0.00015592 1.0898 0.00056864 0.79098 0.00041271 521.7743702461611 87.083 0.2147 83.356 83.184 83.399 -3.727 8 5 2 0 0 0 0.83242 1 16995 16995 14.838 3.7238 1 775700 + 12449 14105 7891 7894 12687 12687 0.015134289981688198 ELDVNTDIY 9 Unmodified _ELDVNTDIY_ 0 0 0 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2757568359375 2 541.256037 1080.49752 0.30131 0.00016308 -0.32216 -0.00017437 -0.020853 -1.1287E-05 541.2558468289681 111.53 0.66117 111.53 111.21 111.87 0 32 18 2 0 0 0 0.071377 2 21966 21894;21966 64.236 19.829 1 2991400 12450 2045 7892 7895 12688;12689 12689 -0.03950867618414122 ELDVNTDIY 9 Unmodified _ELDVNTDIY_ 0 0 0 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2820434570312 2 541.256037 1080.49752 0.28363 0.00015351 -0.19031 -0.00010301 0.093312 5.0506E-05 541.2557769601935 116.18 0.73013 111.7 111.34 112.07 -4.486 51 20 3 0 0 0 0.010349 3 22891 22882;22887;22891 103.75 54.59 1 5802300 12451 2045 7892 7895 12690;12691;12692 12692 -0.03950867618414122 ELDVNTDIY 9 Unmodified _ELDVNTDIY_ 0 0 0 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.275634765625 2 541.256037 1080.49752 0.36338 0.00019668 -0.23405 -0.00012668 0.12933 7E-05 541.2558269163042 116.27 0.72397 111.69 111.42 112.15 -4.5815 48 20 3 0 0 0 0.054027 1 22306 22306 60.47 45.484 1 5014600 12452 2045 7892 7895 12693 12693 -0.03950867618414122 ELDVNTDIY 9 Unmodified _ELDVNTDIY_ 0 0 0 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2762451171875 2 541.256037 1080.49752 0.57765 0.00031266 -0.51276 -0.00027754 0.064887 3.5121E-05 541.2557133471327 116.06 0.77504 111.7 111.32 112.09 -4.3585 47 21 3 0 0 0 0.0378 1 22338 22338 67.187 52.201 1 5737700 12453 2045 7892 7895 12694 12694 -0.03950867618414122 ELEAFNMLK 9 Unmodified _ELEAFNMLK_ 0 0 0 ENST00000552741.5_1_12:82868290-82872800:+|nuORF;ENST00000551645.1_1_12:82870329-82872800:+|nuORF;ENST00000548432.5_1_12:82832322-82872800:+|nuORF;ENSG00000127720|ENST00000248306|METTL25 ENST00000552741.5_1_12:82868290-82872800:+|nuORF ENST00000552741.5_1_12:82868290-82872800:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7725219726562 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 155.78 1 151 150.5 151.5 -4.7791 0 0 0 0.18755 1 30969 30969 2.6312 1.7863 1 12454 3490 7893 7896 12695 12695 0.004749635057123669 ELEAVQKY 8 Unmodified _ELEAVQKY_ 0 0 0 tr|U7SLV3|U7SLV3_FUSNUYwqI/YxiCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01902PE=4SV=1 tr|U7SLV3|U7SLV3_FUSNUYwqI/YxiCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01902PE=4SV=1 tr|U7SLV3|U7SLV3_FUSNUYwqI/YxiCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01902PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26678466796875 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 127.21 1 122.51 122.01 123.01 -4.6998 0 0 0 0.18898 1 24471 24471 28.487 3.813 1 12455 25994 7894 7897 12696 12696 0.012100613149982564 ELEDLNKW 8 Unmodified _ELEDLNKW_ 0 0 0 PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000184588|Q07343-4|PDE4B PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6959838867188 2 523.761289 1045.50803 0.11505 6.0256E-05 -0.49708 -0.00026035 -0.38204 -0.0002001 523.7612127462186 93.372 0.79982 89.528 89.017 89.817 -3.844 38 22 2 0 0 0 0.98792 1 17798 17798 9.3474 0 1 2546400 12456 6923 7895 7898 12697 12697 -0.01290840173351171 ELEDSRTFR 9 Unmodified _ELEDSRTFR_ 0 0 0 REV__nc|ENSG00000170374|Q8TDD2-2|SP7 REV__nc|ENSG00000170374|Q8TDD2-2|SP7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3377685546875 2 576.785827 1151.5571 0.21113 0.00012178 0.39411 0.00022731 0.60524 0.00034909 576.786241823748 61.761 0.41303 58.521 58.413 58.826 -3.2395 19 11 2 0 0 0 0.58699 1 11593 11593 25.399 3.8623 1 1598600 + 12457 18156 7896 7899 12698 12698 -0.012615518843858808 ELEEDYENY 9 Unmodified _ELEEDYENY_ 0 0 0 REV__ENSG00000109111|ENST00000314616|SUPT6H REV__ENSG00000109111|ENST00000314616|SUPT6H MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2947387695312 2 602.238041 1202.46153 NaN NaN NaN NaN NaN NaN NaN 94.911 1 91.03 90.53 91.53 -3.881 0 0 0 0.23508 1 18210 18210 7.9102 1.187 1 + 12458 15153 7897 7900 12699 12699 -0.13160369585921217 ELEELVPRLF 10 Unmodified _ELEELVPRLF_ 0 0 0 ENSG00000204969|ENST00000526136|PCDHA2;PCDHA2|p.R65W|2|0.31|ENSG00000204969|chr5:140795157-140795157|C/T|missense_variant;PCDHA2|p.K766Rfs*29|2|0.32|ENSG00000204969|chr5:140797253-140797253|C/-|frameshift_variant;nc|ENSG00000204969|Q9Y5H9-3|PCDHA2;nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 ENSG00000204969|ENST00000526136|PCDHA2 ENSG00000204969|ENST00000526136|PCDHA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.77978515625 2 622.847896 1243.68124 NaN NaN NaN NaN NaN NaN NaN 85.49 1 81.58 81.08 82.08 -3.9093 0 0 0 0.22588 1 16260 16260 6.7232 1.4263 1 12459 7624 7898 7901 12700 12700 0.06914525883098577 ELEGKNCH 8 Unmodified _ELEGKNCH_ 0 0 0 ENST00000546497.1_1_12:51818771-51834593:+|nuORF ENST00000546497.1_1_12:51818771-51834593:+|nuORF ENST00000546497.1_1_12:51818771-51834593:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2391357421875 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 82.26 1 82.26 81.76 82.76 0 0 0 0 0.21323 1 16025 16025 14.582 2.0501 1 12460 11130 7899 7902 12701 12701 -0.05980195427844137 ELEHHLNCSY 10 Unmodified _ELEHHLNCSY_ 0 0 0 REV__ENST00000560942.2_3_15:69726998-69727352:-|nuORF REV__ENST00000560942.2_3_15:69726998-69727352:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7684936523438 2 622.771862 1243.52917 NaN NaN NaN NaN NaN NaN NaN 155.27 1 155.27 154.77 155.77 0 0 0 0 2.8426 1 31126 31126 0.013265 0 1 + 12461 23045 7900 7903 12702 12702 -0.08285198136127292 ELEHLQPD 8 Unmodified _ELEHLQPD_ 0 0 0 nc|ENSG00000122376|Q86V20|SHLD2;ENSG00000122376|ENST00000298786|SHLD2;ENST00000475914.1_1_10:46914492-46918356:+|nuORF;ENST00000554755.1_1_14:88420325-88420703:+|nuORF;ENST00000323387.5_10:47380981-47400428:+|nuORF nc|ENSG00000122376|Q86V20|SHLD2 nc|ENSG00000122376|Q86V20|SHLD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640380859375 2 490.737814 979.461075 0.041308 2.0271E-05 0.18905 9.2774E-05 0.23036 0.00011305 490.73806203806606 79.02 0.52578 75.215 74.984 75.51 -3.8048 25 14 2 0 0 0 0.95515 1 15026 15026 6.7232 0 1 1637300 12462 3220 7901 7904 12703 12703 -0.02947699724472841 ELEKALSCPG 10 Unmodified _ELEKALSCPG_ 0 0 0 ENSG00000170365|ENST00000302085|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6786499023438 2 523.762975 1045.5114 NaN NaN NaN NaN NaN NaN NaN 97.052 1 93.133 92.633 93.633 -3.9194 0 0 0 0.22588 1 18627 18627 13.042 0 1 12463 6062 7902 7905 12704 12704 -0.009539133909811426 ELEKHMAA 8 Unmodified _ELEKHMAA_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1;ENST00000468428.1_1_20:17600178-17600424:-|nuORF nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24627685546875 2 464.731477 927.448402 -0.087374 -4.0605E-05 0.030691 1.4263E-05 -0.056684 -2.6343E-05 464.7316175255457 23.481 0.35458 22.027 21.852 22.206 -1.4535 14 9 2 0 0 0 8448 1 3805 3805 6.2058 6.1765 1 850220 12464 3396 7903 7906 12705 12705 -0.01822434388361671 ELEKINDQY 9 Unmodified _ELEKINDQY_ 0 0 0 REV__ENSG00000090889|ENST00000374403|KIF4A REV__ENSG00000090889|ENST00000374403|KIF4A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3301391601562 2 576.282586 1150.55062 -0.033456 -1.928E-05 0.63013 0.00036313 0.59668 0.00034385 576.2825173267131 91.308 0.82754 87.383 86.996 87.823 -3.9251 30 23 2 0 0 0 0.8319 1 17917 17917 12.532 0.89125 1 1399600 + 12465 14556 7904 7907 12706 12706 -0.018634898357504426 ELEKLLSYWFR 11 Unmodified _ELEKLLSYWFR_ 0 0 0 REV__ENSG00000053328|ENST00000338882|METTL24 REV__ENSG00000053328|ENST00000338882|METTL24 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.4002075195312 2 742.400827 1482.7871 NaN NaN NaN NaN NaN NaN NaN 118.17 1 113.67 113.17 114.17 -4.502 0 0 0 0.22765 1 23294 23294 10.151 3.0488 1 + 12466 14096 7905 7908 12707 12707 0.06501861728565927 ELEKLLSYWFR 11 Unmodified _ELEKLLSYWFR_ 0 0 0 REV__ENSG00000053328|ENST00000338882|METTL24 REV__ENSG00000053328|ENST00000338882|METTL24 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3997802734375 2 742.400827 1482.7871 NaN NaN NaN NaN NaN NaN NaN 171.86 1 166.94 166.44 167.44 -4.9149 0 0 0 0.23018 1 34061 34061 8.1555 2.8586 1 + 12467 14096 7905 7908 12708 12708 0.06501861728565927 ELEKTTLNFIW 11 Unmodified _ELEKTTLNFIW_ 0 0 0 L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|39|1|sense L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|39|1|sense L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|39|1|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2490539550781 3 465.250249 1392.72892 NaN NaN NaN NaN NaN NaN NaN 127.64 1 122.85 122.35 123.35 -4.7958 0 0 0 0.22632 1 24499 24499 0.03141 0 1 12468 12060 7906 7909 12709 12709 0.04826180083273357 ELELNSLY 8 Unmodified _ELELNSLY_ 0 0 0 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2579345703125 2 490.75039 979.486227 0.49147 0.00024119 -0.27563 -0.00013527 0.21584 0.00010593 490.75019741139647 124.12 0.84653 119.38 119 119.85 -4.731 59 23 3 0 0 0 0.13046 1 23851 23851 71.134 9.7761 1 11839000 + 12469 15174 7907 7910 12710 12710 -0.0043364492189539305 ELELPQPP 8 Unmodified _ELELPQPP_ 0 0 0 REV__nc|ENSG00000168062|Q8N1L9-2|BATF2 REV__nc|ENSG00000168062|Q8N1L9-2|BATF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.540771484375 2 461.74765 921.480748 -0.072991 -3.3704E-05 0.24307 0.00011224 0.17008 7.8533E-05 461.74753577485393 79.302 0.74268 75.626 75.233 75.975 -3.676 27 20 2 0 0 0 0.91917 1 15051 15051 20.454 3.5113 1 964140 + 12470 17994 7908 7911 12711 12711 0.01686676286283273 ELELQMKLWMY 11 Unmodified _ELELQMKLWMY_ 0 0 0 ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75 ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENST00000436347.5_1_2:190313199-190340140:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3707275390625 2 742.369823 1482.72509 NaN NaN NaN NaN NaN NaN NaN 110.29 1 106.1 105.6 106.6 -4.1826 0 0 0 0.23698 1 21226 21226 2.7352 1.4057 1 12471 2852 7909 7912 12712 12712 0.003040509935544833 ELEMDEESL 9 Unmodified _ELEMDEESL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77392578125 2 547.731537 1093.44852 0.48438 0.00026531 0.12907 7.0694E-05 0.61345 0.00033601 548.2325705721665 119 0.14002 114.59 114.49 114.63 -4.4088 5 3 2 0 0 0 0.67531 1 22902 22902 7.9102 0.62092 1 588610 12472 2541 7910 7913 12713 12713 -0.094465239696774 ELENCLYVV 9 Unmodified _ELENCLYVV_ 0 0 0 KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant;ENSG00000183655|ENST00000337975|KLHL25 KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2665405273438 2 541.26535 1080.51615 0.21535 0.00011656 2.139 0.0011578 2.3543 0.0012743 541.2665361071357 128.26 0.57018 123.44 123.31 123.88 -4.817 20 15 2 0 0 0 0.31714 1 24633 24633 30.637 3.7529 1 1961700 12473 6860 7911 7914 12714 12714 -0.020890292482363293 ELEPGAGL 8 Unmodified _ELEPGAGL_ 0 0 0 ENSG00000183615|ENST00000373582|FAM167B;COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant;COL18A1|p.G746Afs*3|1|0.14|ENSG00000182871|chr21:45477470-45477470|G/-|frameshift_variant;COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1 ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4074096679688 1 785.40396 784.396684 0.66531 0.00052254 2.0573 0.0016159 2.7227 0.0021384 785.406068050835 107.08 0.72397 107.08 106.79 107.51 0 28 20 2 0 0 0 0.097641 1 21022 21022 63.563 0 1 3590200 12474 6856 7912 7915 12715 12715 -0.004138548105970585 ELEPGAGL 8 Unmodified _ELEPGAGL_ 0 0 0 ENSG00000183615|ENST00000373582|FAM167B;COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant;COL18A1|p.G746Afs*3|1|0.14|ENSG00000182871|chr21:45477470-45477470|G/-|frameshift_variant;COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1 ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3780517578125 1 785.40396 784.396684 0.2346 0.00018426 1.3703 0.0010762 1.6049 0.0012605 785.4053107907747 111.33 0.58925 106.91 106.58 107.16 -4.4231 25 16 2 0 0 0 0.14825 2 21973 21973;21983 53.576 3.9584 1 3088900 12475 6856 7912 7915 12716;12717 12716 -0.004138548105970585 ELEPGAGL 8 Unmodified _ELEPGAGL_ 0 0 0 ENSG00000183615|ENST00000373582|FAM167B;COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant;COL18A1|p.G746Afs*3|1|0.14|ENSG00000182871|chr21:45477470-45477470|G/-|frameshift_variant;COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1 ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4048461914062 1 785.40396 784.396684 0.14985 0.00011769 0.66757 0.00052431 0.81742 0.000642 785.4045482240449 111.48 0.45171 106.99 106.82 107.27 -4.4915 21 12 2 0 0 0 0.13334 1 21412 21412 56.541 0 1 2400900 12476 6856 7912 7915 12718 12718 -0.004138548105970585 ELEPGAGL 8 Unmodified _ELEPGAGL_ 0 0 0 ENSG00000183615|ENST00000373582|FAM167B;COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant;COL18A1|p.G746Afs*3|1|0.14|ENSG00000182871|chr21:45477470-45477470|G/-|frameshift_variant;COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1 ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4054565429688 1 785.40396 784.396684 0.7994 0.00062785 0.85696 0.00067306 1.6564 0.0013009 785.4046749014586 111.29 0.8375 107.06 106.52 107.35 -4.2289 37 23 2 0 0 0 0.080209 1 21437 21437 74.396 0 1 2695800 12477 6856 7912 7915 12719 12719 -0.004138548105970585 ELERKYWKNL 10 Unmodified _ELERKYWKNL_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2379150390625 3 460.254105 1377.74048 0.46734 0.00021509 -0.31611 -0.00014549 0.15122 6.9601E-05 460.2539079645746 116.87 1.0591 112.51 111.99 113.05 -4.3585 63 29 3 0 0 0 0.73657 1 22466 22466 7.4771 0.85361 1 3001800 12478 1369 7913 7916 12720 12720 0.06672421897292224 ELESDGHCFL 10 Unmodified _ELESDGHCFL_ 0 0 0 ENST00000559390.5_1_15:45021570-45021696:+|nuORF ENST00000559390.5_1_15:45021570-45021696:+|nuORF ENST00000559390.5_1_15:45021570-45021696:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3363037109375 2 575.247689 1148.48082 -0.051906 -2.9859E-05 0.40437 0.00023261 0.35247 0.00020275 575.2476382068917 67.115 0.38652 64.006 63.826 64.213 -3.1086 18 10 3 0 0 0 0.744 1 13028 13028 6.7232 1.4263 1 1464300 12479 11274 7914 7917 12721 12721 -0.08747691776011379 ELESDGHCFL 10 Unmodified _ELESDGHCFL_ 0 0 0 ENST00000559390.5_1_15:45021570-45021696:+|nuORF ENST00000559390.5_1_15:45021570-45021696:+|nuORF ENST00000559390.5_1_15:45021570-45021696:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 575.247689 1148.48082 0.381 0.00021917 -3.043 -0.0017505 -2.662 -0.0015313 575.245471217758 67.549 0.31345 64.053 63.89 64.203 -3.4965 0.023385 -0.0036138 NaN 6.7232 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1357900 12480 11274 7914 7917 -0.08747691776011379 ELETEGERQL 10 Unmodified _ELETEGERQL_ 0 0 0 ENST00000485676.5_1_X:106359410-106359983:-|nuORF;ENST00000471079.1_1_X:106358576-106359983:-|nuORF;nc|ENSG00000089682|Q96IZ5-3|RBM41;RBM41|p.M298Vfs*5|1|0.21|ENSG00000089682|chrX:107088470-107088471|AT/-|frameshift_variant;nc|ENSG00000089682|Q96IZ5-2|RBM41;nc|ENSG00000089682|Q96IZ5|RBM41;ENSG00000089682|ENST00000685964|RBM41 ENST00000485676.5_1_X:106359410-106359983:-|nuORF ENST00000485676.5_1_X:106359410-106359983:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.290283203125 2 602.296224 1202.5779 NaN NaN NaN NaN NaN NaN NaN 171.97 1 167.06 166.56 167.56 -4.9115 0 0 0 0.22588 1 34090 34090 8.7454 1.6437 1 12481 1766 7915 7918 12722 12722 -0.015290062953681627 ELETKFLV 8 Unmodified _ELETKFLV_ 0 0 0 REV__nc|ENSG00000133401|O15018-2|PDZD2 REV__nc|ENSG00000133401|O15018-2|PDZD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 489.7572326660156 2 489.778951 977.543348 -0.082849 -4.0578E-05 0.87907 0.00043055 0.79622 0.00038997 489.77918025048615 129.11 0.487 124.37 124.08 124.57 -4.7408 24 13 2 0 0 0 8448 1 24815 24815 6.2058 0 1 1220000 + 12482 16165 7916 7919 12723 12723 0.05367822354469354 ELETLNKL 8 Unmodified _ELETLNKL_ 0 0 0 REV__nc|ENSG00000143748|O15381-5|NVL REV__nc|ENSG00000143748|O15381-5|NVL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7784423828125 2 480.274032 958.533512 -0.014739 -7.0786E-06 -0.13143 -6.3121E-05 -0.14617 -7.02E-05 480.2740105731211 75.976 1.6452 72.561 72.017 73.662 -3.4151 141 46 5 0 0 0 0.25036 1 14781 14781 40.449 0 1 231860000 + 12483 16747 7917 7920 12724 12724 0.05258634349092972 ELETLNKL 8 Unmodified _ELETLNKL_ 0 0 0 REV__nc|ENSG00000143748|O15381-5|NVL REV__nc|ENSG00000143748|O15381-5|NVL MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.274032 958.533512 -0.014739 -7.0786E-06 -0.13143 -6.3121E-05 -0.14617 -7.02E-05 480.2740105731211 75.976 1.6452 72.561 72.017 73.662 -3.4151 -0.11404 4.4069E-05 NaN 40.449 141 46 5 NaN NaN NaN NaN 0 NaN NaN 0 231860000 + 12484 16747 7917 7920 0.05258634349092972 ELEVTAVPV 9 Unmodified _ELEVTAVPV_ 0 0 0 REV__ENST00000497465.1_1_15:44065316-44067617:-|nuORF REV__ENST00000497465.1_1_15:44065316-44067617:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7332763671875 2 478.768583 955.522613 -0.067043 -3.2098E-05 0.25322 0.00012123 0.18618 8.9135E-05 478.76862148917985 127.78 0.76878 127.78 127.34 128.11 0 46 21 3 0 0 0 0.16442 1 25260 25260 42.095 6.0504 1 5391900 + 12485 15938 7918 7921 12725 12725 0.0430723197481484 ELFAFISHM 9 Unmodified _ELFAFISHM_ 0 0 0 nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13 nc|ENSG00000058056|Q92995-2|USP13 nc|ENSG00000058056|Q92995-2|USP13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.76904296875 2 547.770603 1093.52665 NaN NaN NaN NaN NaN NaN NaN 46.907 1 44.066 43.566 44.566 -2.8409 0 0 0 0.23508 1 8850 8850 11.64 3.7301 1 12486 1289 7919 7922 12726 12726 -0.016370018031238942 ELFDAHEGFS 10 Unmodified _ELFDAHEGFS_ 0 0 0 PITPNM1|p.F350L|1|0.59|ENSG00000110697|chr11:67499927-67499927|G/T|missense_variant PITPNM1|p.F350L|1|0.59|ENSG00000110697|chr11:67499927-67499927|G/T|missense_variant PITPNM1|p.F350L|1|0.59|ENSG00000110697|chr11:67499927-67499927|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3243408203125 2 576.253828 1150.4931 NaN NaN NaN NaN NaN NaN NaN 92.185 1 88.377 87.877 88.877 -3.8083 0 0 0 0.22588 1 17660 17660 6.7232 1.9672 1 12487 12793 7920 7923 12727 12727 -0.07612332041321679 ELFDTENVV 9 Unmodified _ELFDTENVV_ 0 0 0 ENSG00000165417|ENST00000553612|GTF2A1;nc|ENSG00000165417|P52655-2|GTF2A1;ENST00000298173.7_1_14:81646569-81676264:-|nuORF ENSG00000165417|ENST00000553612|GTF2A1 ENSG00000165417|ENST00000553612|GTF2A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2607421875 2 533.258579 1064.50261 NaN NaN NaN NaN NaN NaN NaN 26.517 1 24.882 24.382 25.382 -1.6347 0 0 0 0.23508 1 4403 4403 9.3831 0.63772 1 12488 5627 7921 7924 12728 12728 -0.02706563755782554 ELFKQQTTA 9 Unmodified _ELFKQQTTA_ 0 0 0 REV__tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1 REV__tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2814331054688 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 112.22 1 107.7 107.2 108.2 -4.5259 0 0 0 0.21078 1 21541 21541 20.415 1.1575 1 + 12489 24861 7922 7925 12729 12729 0.020531352350417365 ELFLFWNLY 9 Unmodified _ELFLFWNLY_ 0 0 0 nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A nc|ENSG00000004487|O60341|KDM1A nc|ENSG00000004487|O60341|KDM1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7777099609375 2 622.82115 1243.62775 NaN NaN NaN NaN NaN NaN NaN 17.506 1 16.195 15.695 16.695 -1.3109 0 0 0 0.23508 1 2806 2806 4.3292 0.38484 1 12490 974 7923 7926 12730 12730 0.0156777317124579 ELFLRILELNA 11 Unmodified _ELFLRILELNA_ 0 0 0 REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 666.168701171875 2 665.890095 1329.76564 NaN NaN NaN NaN NaN NaN NaN 42.603 1 39.884 39.384 40.384 -2.7191 0 0 0 0.23429 1 7973 7973 4.897 0 1 + 12491 16803 7924 7927 12731 12731 0.11394476699865663 ELFLRKLPPF 10 Unmodified _ELFLRKLPPF_ 0 0 0 REV__TRIML2|p.H377Tfs*6|1|0.06|ENSG00000179046|chr4:188091408-188091409|-/T|frameshift_variant REV__TRIML2|p.H377Tfs*6|1|0.06|ENSG00000179046|chr4:188091408-188091409|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.76220703125 2 630.379166 1258.74378 NaN NaN NaN NaN NaN NaN NaN 34.437 1 32.184 31.684 32.684 -2.2527 0 0 0 0.22588 1 6039 6039 2.9952 1.3426 1 + 12492 18634 7925 7928 12732 12732 0.12475716741937504 ELFNEANNFY 10 Unmodified _ELFNEANNFY_ 0 0 0 nc|ENSG00000132970|Q9UPY6-2|WASF3;WASF3|p.P310Lfs*25|1|0.21|ENSG00000132970|chr13:26681262-26681262|C/-|frameshift_variant;ENSG00000132970|ENST00000335327|WASF3 nc|ENSG00000132970|Q9UPY6-2|WASF3 nc|ENSG00000132970|Q9UPY6-2|WASF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7785034179688 2 630.78021 1259.54587 NaN NaN NaN NaN NaN NaN NaN 100.59 1 96.292 95.792 96.792 -4.297 0 0 0 0.22588 1 19241 19241 3.9444 0.66309 1 12493 12328 7926 7929 12733 12733 -0.07352373978528703 ELFSKTAVKE 10 Unmodified _ELFSKTAVKE_ 0 0 0 ENSG00000155816|ENST00000319653|FMN2 ENSG00000155816|ENST00000319653|FMN2 ENSG00000155816|ENST00000319653|FMN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3201904296875 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 152.77 1 147.55 147.05 148.05 -5.2209 0 0 0 0.22588 1 29609 29609 7.609 1.8771 1 12494 5063 7927 7930 12734 12734 0.05410263957674033 ELGATAAQL 9 Unmodified _ELGATAAQL_ 0 0 0 REV__ENSG00000168286|ENST00000303596|THAP11;REV__THAP11|p.E234Kfs*28|1|0.37|ENSG00000168286|chr16:67843251-67843251|G/-|frameshift_variant REV__ENSG00000168286|ENST00000303596|THAP11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2357482910156 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 66.898 1 66.898 66.398 67.398 0 0 0 0 0.1761 1 12926 12926 26.884 3.7352 1 + 12495 18012;24790 7928 7931 12735 12735 0.019015056264720442 ELGGDSKPL 9 Unmodified _ELGGDSKPL_ 0 0 0 REV__XRCC2|p.E71D|1|0.34|ENSG00000196584|chr7:152649272-152649272|T/G|missense_variant REV__XRCC2|p.E71D|1|0.34|ENSG00000196584|chr7:152649272-152649272|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22900390625 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 104.08 1 99.864 99.364 100.36 -4.2183 0 0 0 0.22962 1 20469 20469 14.838 0 1 + 12496 25548 7929 7932 12736 12736 0.010254882809135779 ELGGTHQPTF 10 Unmodified _ELGGTHQPTF_ 0 0 0 ENST00000532338.5_1_8:145533646-145534000:+|nuORF ENST00000532338.5_1_8:145533646-145534000:+|nuORF ENST00000532338.5_1_8:145533646-145534000:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.786376953125 2 543.764363 1085.51417 0.21743 0.00011823 0.022525 1.2248E-05 0.23996 0.00013048 543.7644275599007 65.927 0.61317 62.88 62.578 63.191 -3.047 42 17 3 0 0 0 0.80147 1 12815 12815 26.268 2.2476 1 6290200 12497 10982 7930 7933 12737 12737 -0.025163219418118388 ELGHPEGKI 9 Unmodified _ELGHPEGKI_ 0 0 0 REV__nc|ENSG00000084093|Q13127-2|REST REV__nc|ENSG00000084093|Q13127-2|REST MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2646179199219 2 490.263999 978.513445 0.48439 0.00023748 -0.26982 -0.00013229 0.21456 0.00010519 490.2639075851975 81.641 0.6634 81.641 81.335 81.998 0 40 18 3 0 0 0 0.46598 1 15953 15953 0.40827 0 1 4103400 + 12498 14464 7931 7934 12738 12738 0.023328834091330464 ELGIEEITG 9 Unmodified _ELGIEEITG_ 0 0 0 REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2487487792969 2 480.747847 959.481142 -0.022204 -1.0674E-05 0.2012 9.6725E-05 0.17899 8.6051E-05 480.7478614165463 120.04 1.4116 120.04 119.48 120.89 0 117 39 4 0 0 0 0.0098628 2 23583 23583;23679 104.8 0 1 85963000 + 12499 19721 7932 7935 12739;12740 12739 -0.00021948784512915154 ELGIEEITG 9 Unmodified _ELGIEEITG_ 0 0 0 REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2494201660156 2 480.747847 959.481142 0.18574 8.9294E-05 0.026 1.2499E-05 0.21174 0.00010179 480.7478006303453 124.62 1.3235 119.97 119.49 120.81 -4.6495 119 36 5 0 0 0 0.0098628 1 24043 24043 104.8 0 1 67514000 + 12500 19721 7932 7935 12741 12741 -0.00021948784512915154 ELGKLDTF 8 Unmodified _ELGKLDTF_ 0 0 0 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.525146484375 2 461.74765 921.480748 0.48968 0.00022611 -0.32884 -0.00015184 0.16084 7.4268E-05 461.7474171354054 122.16 0.62022 117.47 117.16 117.78 -4.6873 25 17 2 0 0 0 0.97173 1 23419 23419 7.9102 0 1 1310800 12501 4527 7933 7936 12742 12742 0.016866762862719042 ELGKLDTF 8 Unmodified _ELGKLDTF_ 0 0 0 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.74765 921.480748 0.14728 6.8007E-05 0.033582 1.5507E-05 0.18086 8.3513E-05 461.74754504051026 121.99 0.60724 117.44 117.1 117.71 -4.5476 -0.0055151 0.0001611 NaN 12.532 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2261800 12502 4527 7933 7936 0.016866762862719042 ELGKLDTF 8 Unmodified _ELGKLDTF_ 0 0 0 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.74765 921.480748 0.31874 0.00014718 -0.18087 -8.3516E-05 0.13787 6.3661E-05 461.7475375488916 121.95 0.50786 117.42 117.15 117.66 -4.5305 -0.023462 -3.6947E-05 NaN 12.532 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1368200 12503 4527 7933 7936 0.016866762862719042 ELGKLPLLAE 10 Unmodified _ELGKLPLLAE_ 0 0 0 REV__ENSG00000169710|ENST00000306749|FASN REV__ENSG00000169710|ENST00000306749|FASN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2633666992188 2 541.826432 1081.63831 0.23597 0.00012785 0.75293 0.00040796 0.9889 0.00053581 541.8271609790977 161.46 0.17276 156.31 156.24 156.41 -5.1438 6 4 2 0 0 0 0.89145 1 31377 31377 8.1555 0.54658 1 2216300 + 12504 18116 7934 7937 12743 12743 0.10075755825664601 ELGLTNERL 9 Unmodified _ELGLTNERL_ 0 0 0 REV__ANKRD26|p.K1090N|1|0.04|ENSG00000107890|chr10:27035180-27035180|C/G|missense_variant REV__ANKRD26|p.K1090N|1|0.04|ENSG00000107890|chr10:27035180-27035180|C/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2796630859375 2 522.787838 1043.56112 -0.62315 -0.00032578 0.37733 0.00019726 -0.24583 -0.00012851 522.7880144255381 81.488 0.59579 77.649 77.296 77.892 -3.8392 42 16 3 0 0 0 0.62921 1 15510 15510 30.637 1.555 1 10484000 + 12505 13058 7935 7938 12744 12744 0.04108537609317864 ELGLTNERL 9 Unmodified _ELGLTNERL_ 0 0 0 REV__ANKRD26|p.K1090N|1|0.04|ENSG00000107890|chr10:27035180-27035180|C/G|missense_variant REV__ANKRD26|p.K1090N|1|0.04|ENSG00000107890|chr10:27035180-27035180|C/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2796630859375 2 522.787838 1043.56112 -0.13663 -7.1428E-05 -0.015732 -8.2245E-06 -0.15236 -7.9653E-05 522.7877203246036 81.371 0.9396 77.683 77.178 78.118 -3.6879 49 26 3 0 0 0 0.47479 1 15533 15533 30.637 0 1 10034000 + 12506 13058 7935 7938 12745 12745 0.04108537609317864 ELGQKQGLTL 10 Unmodified _ELGQKQGLTL_ 0 0 0 REV__ENST00000604957.1_2_X:101857073-101857160:+|nuORF REV__ENST00000604957.1_2_X:101857073-101857160:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7933349609375 2 543.811313 1085.60807 0.33193 0.00018051 -0.16151 -8.7832E-05 0.17042 9.2676E-05 543.811184902297 125.41 0.70738 125.41 125.01 125.72 0 48 19 3 0 0 0 0.23598 1 24776 24776 41.956 5.4494 1 11730000 + 12507 23447 7936 7939 12746 12746 0.06869397160471635 ELGRERQRLQR 11 Unmodified _ELGRERQRLQR_ 0 0 0 ENSG00000198483|ENST00000355594|ANKRD35 ENSG00000198483|ENST00000355594|ANKRD35 ENSG00000198483|ENST00000355594|ANKRD35 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2393798828125 3 480.942924 1439.80694 NaN NaN NaN NaN NaN NaN NaN 138.46 1 133.51 133.01 134.01 -4.9452 0 0 0 0.22632 1 26624 26624 0.0059557 0 1 12508 7455 7937 7940 12747 12747 0.1046305051188483 ELGRNRGP 8 Unmodified _ELGRNRGP_ 0 0 0 nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1 nc|ENSG00000012048|P38398-8|BRCA1 nc|ENSG00000012048|P38398-8|BRCA1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.1130676269531 2 449.746308 897.478063 NaN NaN NaN NaN NaN NaN NaN 119.62 1 115.1 114.6 115.6 -4.5221 0 0 0 0.21323 1 23592 23592 14.582 2.0501 1 12509 1083 7938 7941 12748 12748 0.025222656719961378 ELGRRQWWWRR 11 Unmodified _ELGRRQWWWRR_ 0 0 0 ENST00000296754.7_2_5:96139638-96143632:-|nuORF ENST00000296754.7_2_5:96139638-96143632:-|nuORF ENST00000296754.7_2_5:96139638-96143632:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3819580078125 2 814.937099 1627.85965 NaN NaN NaN NaN NaN NaN NaN 166.29 1 161.34 160.84 161.84 -4.9484 0 0 0 0.23698 1 32569 32569 2.4985 2.1915 1 12510 8514 7939 7942 12749 12749 0.07083053365340675 ELGWVQGPA 9 Unmodified _ELGWVQGPA_ 0 0 0 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-3|TAOK2;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74432373046875 2 478.745442 955.476331 NaN NaN NaN NaN NaN NaN NaN 21.391 1 19.917 19.417 20.417 -1.4742 0 0 0 0.21469 1 3614 3614 19.257 4.4187 1 12511 4817 7940 7943 12750 12750 -0.003187881366216061 ELHDYQEL 8 Unmodified _ELHDYQEL_ 0 0 0 REV__ENSG00000182858|ENST00000330817|ALG12 REV__ENSG00000182858|ENST00000330817|ALG12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6865234375 2 523.743096 1045.47164 NaN NaN NaN NaN NaN NaN NaN 119.02 1 114.41 113.91 114.91 -4.611 0 0 0 0.22692 1 22838 22838 0.68139 0 1 + 12512 18805 7941 7944 12751 12751 -0.049277170700406714 ELHEMGQI 8 Unmodified _ELHEMGQI_ 0 0 0 REV__nc|ENSG00000079308|Q9HBL0-1|TNS1 REV__nc|ENSG00000079308|Q9HBL0-1|TNS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7432556152344 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 108.49 1 104.17 103.67 104.67 -4.32 0 0 0 0.2074 1 21379 21379 19.439 4.8573 1 + 12513 14394 7942 7945 12752 12752 -0.03618738250975184 ELHERKQKRIL 11 Unmodified _ELHERKQKRIL_ 0 0 0 REV__ENST00000529230.5_1_11:46772160-46772702:-|nuORF REV__ENST00000529230.5_1_11:46772160-46772702:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 725.5689086914062 2 725.436067 1448.85758 0.7246 0.00052565 0.76025 0.00055151 1.4849 0.0010772 725.9394381380381 174.65 0.1382 169.76 169.67 169.8 -4.8916 5 3 2 0 0 0 0.81736 1 34775 34775 1.3295 0 1 4050600 + 12514 22738 7943 7946 12753 12753 0.15110579836891702 ELHGKPIEVE 10 Unmodified _ELHGKPIEVE_ 0 0 0 ENST00000476938.5_1_7:23401151-23509630:-|nuORF;ENST00000468005.1_1_7:23455823-23509786:-|nuORF;ENSG00000136231|ENST00000258729|IGF2BP3 ENST00000476938.5_1_7:23401151-23509630:-|nuORF ENST00000476938.5_1_7:23401151-23509630:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3121948242188 2 575.808771 1149.60299 0.1694 9.7543E-05 -0.060512 -3.4843E-05 0.10889 6.27E-05 575.8086878719117 60.613 0.80963 57.389 57.029 57.839 -3.2237 64 22 4 0 0 0 0.70381 1 11275 11275 10.8 0.64894 1 25161000 12515 3992 7944 7947 12754 12754 0.03417093297844076 ELHIASIAT 9 Unmodified _ELHIASIAT_ 0 0 0 tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1 tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1 tr|U7SPC3|U7SPC3_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01811PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.2361755371094 2 477.766374 953.518196 -0.22205 -0.00010609 0.77018 0.00036796 0.54813 0.00026188 477.7666468568993 104.81 0.87448 100.59 100.16 101.04 -4.2183 69 24 4 0 0 0 0.49746 1 20705 20705 1.6919 0.47705 1 8549300 12516 26043 7945 7948 12755 12755 0.0395776755190127 ELHLRCIKA 9 Unmodified _ELHLRCIKA_ 0 0 0 REV__nc|ENSG00000134490|Q24JQ0-3|TMEM241 REV__nc|ENSG00000134490|Q24JQ0-3|TMEM241 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2843017578125 2 541.810593 1081.60663 0.076699 4.1556E-05 -2.775 -0.0015035 -2.6983 -0.001462 541.8093061148336 130.29 0.41861 125.46 125.12 125.54 -4.8355 16 11 2 0 0 0 0.81703 1 24979 24979 14.838 10.082 1 858430 + 12517 24046 7946 7949 12756 12756 0.06909484590710235 ELHLVYMG 8 Unmodified _ELHLVYMG_ 0 0 0 REV__ENSG00000122254|ENST00000261374|HS3ST2 REV__ENSG00000122254|ENST00000261374|HS3ST2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2451171875 2 481.244221 960.473888 -0.0028081 -1.3514E-06 0.90865 0.00043728 0.90585 0.00043593 481.2443735995941 78.763 0.56695 74.958 74.769 75.336 -3.8048 19 15 2 0 0 0 0.71273 1 14981 14981 12.532 0 1 564760 + 12518 15682 7947 7950 12757 12757 -0.007929598659302428 ELHMSSLSY 9 Unmodified _ELHMSSLSY_ 0 0 0 REV__SPAG17|p.D1620Y|1|0.17|ENSG00000155761|chr1:117996662-117996662|C/A|missense_variant REV__SPAG17|p.D1620Y|1|0.17|ENSG00000155761|chr1:117996662-117996662|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2630615234375 2 533.747324 1065.4801 0.48145 0.00025697 2.2242 0.0011872 2.7057 0.0014441 533.7475080945776 105.02 0.17359 100.64 100.53 100.7 -4.3764 6 4 2 0 0 0 0.8319 1 20120 20120 7.9102 0.62092 1 629120 + 12519 24725 7948 7951 12758 12758 -0.050024864250644896 ELHNAWSV 8 Unmodified _ELHNAWSV_ 0 0 0 RNF151|p.R162Q|1|0.1|ENSG00000179580|chr16:1968672-1968672|G/A|missense_variant;ENSG00000179580|ENST00000569714|RNF151 RNF151|p.R162Q|1|0.1|ENSG00000179580|chr16:1968672-1968672|G/A|missense_variant RNF151|p.R162Q|1|0.1|ENSG00000179580|chr16:1968672-1968672|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.736572265625 2 478.235242 954.45593 0.16214 7.7539E-05 0.0039058 1.8679E-06 0.16604 7.9407E-05 478.23526125131065 97.889 0.89758 93.62 93.089 93.987 -4.2692 42 25 2 0 0 0 0.7147 1 18636 18636 10.824 0 1 3150800 12520 6635 7949 7952 12759 12759 -0.023119587964288257 ELHPLQNRWAL 11 Unmodified _ELHPLQNRWAL_ 0 0 0 ENSG00000175766|ENST00000318682|EIF4E1B ENSG00000175766|ENST00000318682|EIF4E1B ENSG00000175766|ENST00000318682|EIF4E1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2300720214844 3 459.585966 1375.73607 0.25773 0.00011845 -0.95322 -0.00043808 -0.69549 -0.00031964 459.58554684492145 110.9 0.63111 110.9 110.64 111.27 0 41 17 3 0 0 0 0.78947 1 21858 21858 5.0475 1.9753 1 3749800 12521 6432 7950 7953 12760 12760 0.06322957474390023 ELHRLHKF 8 Unmodified _ELHRLHKF_ 0 0 0 REV__LRRC4C|p.P562Qfs*34|1|0.35|ENSG00000148948|chr11:40114608-40114608|G/-|frameshift_variant REV__LRRC4C|p.P562Qfs*34|1|0.35|ENSG00000148948|chr11:40114608-40114608|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.5074157714844 3 360.541809 1078.6036 -1.6203 -0.00058418 0.77554 0.00027962 -0.84475 -0.00030457 360.5419699538403 19.957 0.27093 18.322 18.192 18.463 -1.6351 15 7 3 0 0 0 0.89225 1 3033 3033 3.2813 3.2813 1 568480 + 12522 16992 7951 7954 12761 12761 0.06743977528230971 ELHSCLIQT 9 Unmodified _ELHSCLIQT_ 0 0 0 REV__ENSG00000109501|ENST00000226760|WFS1 REV__ENSG00000109501|ENST00000226760|WFS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2709350585938 2 522.263142 1042.51173 NaN NaN NaN NaN NaN NaN NaN 141.06 1 136.41 135.91 136.91 -4.6493 0 0 0 0.18966 1 27858 27858 0.40827 0 1 + 12523 15164 7952 7955 12762 12762 -0.007824936711358532 ELHYVASCTE 10 Unmodified _ELHYVASCTE_ 0 0 0 REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.338623046875 2 576.255514 1150.49647 -0.34717 -0.00020006 1.1953 0.00068883 0.84818 0.00048877 576.2563791353144 106.35 0.62416 102.09 101.83 102.46 -4.2638 28 17 2 0 0 0 0.57735 1 20979 20979 20.454 2.3186 1 1253300 + 12524 13202 7953 7956 12763 12763 -0.07275405258974388 ELIDKKIKV 9 Unmodified _ELIDKKIKV_ 0 0 0 tr|U7T5R8|U7T5R8_FUSNUMalonicsemialdehydereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00059PE=3SV=1 tr|U7T5R8|U7T5R8_FUSNUMalonicsemialdehydereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00059PE=3SV=1 tr|U7T5R8|U7T5R8_FUSNUMalonicsemialdehydereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00059PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78466796875 2 543.350074 1084.6856 0.014207 7.7193E-06 0.37725 0.00020498 0.39146 0.0002127 543.3502365099522 24.161 0.76668 22.626 22.362 23.129 -1.5342 69 21 5 0 0 0 0.64764 1 3881 3881 0.96228 0 1 67692000 12525 26474 7954 7957 12764 12764 0.1466403509666634 ELIEKQFRRWY 11 Unmodified _ELIEKQFRRWY_ 0 0 0 REV__ENST00000450453.6_2_1:163292714-163292795:+|nuORF REV__ENST00000450453.6_2_1:163292714-163292795:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6954345703125 3 523.284175 1566.8307 NaN NaN NaN NaN NaN NaN NaN 55.492 1 52.609 52.109 53.109 -2.8837 0 0 0 0.22632 1 10622 10622 0.172 0.172 1 + 12526 21798 7955 7958 12765 12765 0.06995471225695837 ELIEKYFVY 9 Unmodified _ELIEKYFVY_ 0 0 0 SCN1A|p.S1631Y|1|0.24|ENSG00000144285|chr2:165992383-165992383|G/T|missense_variant SCN1A|p.S1631Y|1|0.24|ENSG00000144285|chr2:165992383-165992383|G/T|missense_variant SCN1A|p.S1631Y|1|0.24|ENSG00000144285|chr2:165992383-165992383|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.282958984375 2 602.31844 1202.62233 0.95688 0.00057634 -0.040488 -2.4386E-05 0.91639 0.00055196 602.318608654415 120.25 0.41579 115.61 115.42 115.84 -4.645 16 11 2 0 0 0 0.41081 1 23123 23123 2.6312 2.4239 1 1472500 12527 25642 7956 7959 12766 12766 0.029120495887582365 ELIEKYFVY 9 Unmodified _ELIEKYFVY_ 0 0 0 SCN1A|p.S1631Y|1|0.24|ENSG00000144285|chr2:165992383-165992383|G/T|missense_variant SCN1A|p.S1631Y|1|0.24|ENSG00000144285|chr2:165992383-165992383|G/T|missense_variant SCN1A|p.S1631Y|1|0.24|ENSG00000144285|chr2:165992383-165992383|G/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 602.31844 1202.62233 0.4559 0.0002746 1.9815 0.0011935 2.4374 0.0014681 602.3184993948645 120.12 0.41031 115.65 115.44 115.85 -4.467 -0.015637 0.002712 NaN 2.6312 12 11 2 NaN NaN NaN NaN 0 NaN NaN 0 923760 12528 25642 7956 7959 0.029120495887582365 ELIEWLFH 8 Unmodified _ELIEWLFH_ 0 0 0 REV__ENST00000347770.8_1_8:103852005-103852041:-|nuORF REV__ENST00000347770.8_1_8:103852005-103852041:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79150390625 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 152.89 1 147.67 147.17 148.17 -5.2209 0 0 0 0.21486 1 29633 29633 8.5933 0.68312 1 + 12529 20758 7957 7960 12767 12767 0.01522644448596111 ELIFPIKEKEK 11 Unmodified _ELIFPIKEKEK_ 0 0 0 REV__ENSG00000155761|ENST00000336338|SPAG17 REV__ENSG00000155761|ENST00000336338|SPAG17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2237243652344 3 458.606144 1372.7966 0.10251 4.701E-05 -3.5188 -0.0016137 -3.4163 -0.0015667 458.9387359315942 59.027 0.39202 55.822 55.538 55.93 -3.2052 15 10 2 0 0 0 0.96129 1 11002 11002 2.084 0.86914 1 708210 + 12530 17225 7958 7961 12768 12768 0.12511630014068942 ELIFPIKEKEK 11 Unmodified _ELIFPIKEKEK_ 0 0 0 REV__ENSG00000155761|ENST00000336338|SPAG17 REV__ENSG00000155761|ENST00000336338|SPAG17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 458.606144 1372.7966 0.10065 4.6159E-05 -3.1808 -0.0014587 -3.0801 -0.0014126 458.6047462857538 56.01 0.14172 56.01 55.904 56.046 0 0.094047 0.00037046 NaN 2.084 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 625200 + 12531 17225 7958 7961 0.12511630014068942 ELIHLPGAL 9 Unmodified _ELIHLPGAL_ 0 0 0 REV__PTPN21|p.I849Lfs*9|1|0.43|ENSG00000070778|chr14:88473769-88473769|T/-|frameshift_variant REV__PTPN21|p.I849Lfs*9|1|0.43|ENSG00000070778|chr14:88473769-88473769|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7881164550781 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 133.19 1 133.19 132.69 133.69 0 0 0 0 0.22251 1 26345 26345 16.942 2.104 1 + 12532 14266 7959 7962 12769 12769 0.07734948311224343 ELIIRGVQ 8 Unmodified _ELIIRGVQ_ 0 0 0 REV__TREM1|p.D89N|1|0.11|ENSG00000124731|chr6:41282536-41282536|C/T|missense_variant REV__TREM1|p.D89N|1|0.11|ENSG00000124731|chr6:41282536-41282536|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 464.2545166015625 2 464.284734 926.554916 0.30878 0.00014336 -0.48874 -0.00022692 -0.17996 -8.3554E-05 464.28447045922155 98.589 0.93454 98.589 98.089 99.024 0 67 26 4 0 0 0 0.53679 1 19339 19339 6.1918 0 1 14736000 + 12533 15791 7960 7963 12770 12770 0.0887006416847953 ELIQRIEPWER 11 Unmodified _ELIQRIEPWER_ 0 0 0 REV__ENSG00000146809|ENST00000451215|ASB15 REV__ENSG00000146809|ENST00000451215|ASB15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26641845703125 3 490.268414 1467.78341 NaN NaN NaN NaN NaN NaN NaN 151.52 1 151.52 151.02 152.02 0 0 0 0 0.22632 1 30343 30343 0.026206 0 1 + 12534 16899 7961 7964 12771 12771 0.06823191954708818 ELIQRIEPWER 11 Unmodified _ELIQRIEPWER_ 0 0 0 REV__ENSG00000146809|ENST00000451215|ASB15 REV__ENSG00000146809|ENST00000451215|ASB15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2687072753906 3 490.268414 1467.78341 NaN NaN NaN NaN NaN NaN NaN 152.74 1 152.74 152.24 153.24 0 0 0 0 0.22632 1 30597 30597 0.00056442 0 1 + 12535 16899 7961 7964 12772 12772 0.06823191954708818 ELIQRIEPWER 11 Unmodified _ELIQRIEPWER_ 0 0 0 REV__ENSG00000146809|ENST00000451215|ASB15 REV__ENSG00000146809|ENST00000451215|ASB15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26849365234375 3 490.268414 1467.78341 NaN NaN NaN NaN NaN NaN NaN 110.58 1 106.35 105.85 106.85 -4.2289 0 0 0 0.22632 1 21282 21282 0.026206 0 1 + 12536 16899 7961 7964 12773 12773 0.06823191954708818 ELIQRIEPWER 11 Unmodified _ELIQRIEPWER_ 0 0 0 REV__ENSG00000146809|ENST00000451215|ASB15 REV__ENSG00000146809|ENST00000451215|ASB15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2679443359375 3 490.268414 1467.78341 NaN NaN NaN NaN NaN NaN NaN 132.84 1 128.04 127.54 128.54 -4.799 0 0 0 0.22632 1 25566 25566 0.026206 0 1 + 12537 16899 7961 7964 12774 12774 0.06823191954708818 ELIYQRSDK 9 Unmodified _ELIYQRSDK_ 0 0 0 nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENSG00000048342|ENST00000424120|CC2D2A nc|ENSG00000048342|Q9P2K1-2|CC2D2A nc|ENSG00000048342|Q9P2K1-2|CC2D2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3342895507812 2 576.306395 1150.59824 NaN NaN NaN NaN NaN NaN NaN 87.268 1 87.268 86.768 87.768 0 0 0 0 0.23277 1 17034 17034 13.906 0.86358 1 12538 1226 7962 7965 12775 12775 0.02896209155096585 ELKDIKAY 8 Unmodified _ELKDIKAY_ 0 0 0 ENST00000495736.1_1_7:129986419-130007427:+|nuORF;nc|ENSG00000158525|Q8WXQ8-2|CPA5;CPA5|p.W384Lfs*4|1|0.1|ENSG00000158525|chr7:130368434-130368435|-/C|frameshift_variant;nc|ENSG00000158525|Q8WXQ8-3|CPA5;ENSG00000158525|ENST00000474905|CPA5 ENST00000495736.1_1_7:129986419-130007427:+|nuORF ENST00000495736.1_1_7:129986419-130007427:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2766418457031 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 90.179 1 86.32 85.82 86.82 -3.8595 0 0 0 0.17344 1 17643 17643 34.102 7.2188 1 12539 712 7963 7966 12776 12776 0.048469382116991255 ELKDIKAY 8 Unmodified _ELKDIKAY_ 0 0 0 ENST00000495736.1_1_7:129986419-130007427:+|nuORF;nc|ENSG00000158525|Q8WXQ8-2|CPA5;CPA5|p.W384Lfs*4|1|0.1|ENSG00000158525|chr7:130368434-130368435|-/C|frameshift_variant;nc|ENSG00000158525|Q8WXQ8-3|CPA5;ENSG00000158525|ENST00000474905|CPA5 ENST00000495736.1_1_7:129986419-130007427:+|nuORF ENST00000495736.1_1_7:129986419-130007427:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.276611328125 2 490.276575 978.538597 0.48926 0.00023987 -0.25854 -0.00012676 0.23072 0.00011312 490.27641419179724 89.221 1.6526 85.177 84.721 86.374 -4.0443 137 46 5 0 0 0 0.36038 1 17218 17218 34.102 3.4659 1 105750000 12540 712 7963 7966 12777 12777 0.048469382116991255 ELKDIKAY 8 Unmodified _ELKDIKAY_ 0 0 0 ENST00000495736.1_1_7:129986419-130007427:+|nuORF;nc|ENSG00000158525|Q8WXQ8-2|CPA5;CPA5|p.W384Lfs*4|1|0.1|ENSG00000158525|chr7:130368434-130368435|-/C|frameshift_variant;nc|ENSG00000158525|Q8WXQ8-3|CPA5;ENSG00000158525|ENST00000474905|CPA5 ENST00000495736.1_1_7:129986419-130007427:+|nuORF ENST00000495736.1_1_7:129986419-130007427:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2762451171875 2 490.276575 978.538597 -0.030993 -1.5195E-05 0.2381 0.00011674 0.20711 0.00010154 490.27665324732504 88.934 1.822 85.184 84.743 86.565 -3.7501 135 51 5 0 0 0 0.36038 1 17239 17239 34.102 7.2188 1 121060000 12541 712 7963 7966 12778 12778 0.048469382116991255 ELKFSSDH 8 Unmodified _ELKFSSDH_ 0 0 0 REV__ENST00000382361.7_1_7:5646078-5646261:+|nuORF REV__ENST00000382361.7_1_7:5646078-5646261:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2499084472656 2 481.732532 961.45051 NaN NaN NaN NaN NaN NaN NaN 91.022 1 91.022 90.522 91.522 0 0 0 0 0.21486 1 17783 17783 8.5933 0.68312 1 + 12542 21179 7964 7967 12779 12779 -0.03175682378889633 ELKGAQTELY 10 Unmodified _ELKGAQTELY_ 0 0 0 REV__nc|ENSG00000122966|O14578-3|CIT REV__nc|ENSG00000122966|O14578-3|CIT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3314819335938 2 576.300778 1150.587 NaN NaN NaN NaN NaN NaN NaN 82.289 1 78.416 77.916 78.916 -3.8736 0 0 0 2.8426 1 15635 15635 0.84494 0.72208 1 + 12543 15711 7965 7968 12780 12780 0.017733870609617952 ELKKFCSRI 9 Unmodified _ELKKFCSRI_ 0 0 0 nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;AP5Z1|p.Q696Rfs*6|3|0.43|ENSG00000242802|chr7:4790814-4790814|C/-|frameshift_variant;ENSG00000242802|ENST00000649063|AP5Z1 nc|ENSG00000242802|O43299-2|AP5Z1 nc|ENSG00000242802|O43299-2|AP5Z1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2159423828125 3 375.214593 1122.62195 NaN NaN NaN NaN NaN NaN NaN 120.32 1 115.79 115.29 116.29 -4.5221 0 0 0 0.23508 1 23723 23723 4.5289 2.0304 1 12544 178 7966 7969 12781 12781 0.06554351387921997 ELKKIKKTLK 10 Unmodified _ELKKIKKTLK_ 0 0 0 REV__ENST00000445715.5_1_Y:21755293-21766003:+|nuORF REV__ENST00000445715.5_1_Y:21755293-21766003:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 614.8035278320312 2 614.921198 1227.82784 NaN NaN NaN NaN NaN NaN NaN 170.27 1 170.27 169.77 170.77 0 0 0 0 0.22588 1 35003 35003 1.4819 0 1 + 12545 21754 7967 7970 12782 12782 0.2230424783883791 ELKKILVKILV 11 Unmodified _ELKKILVKILV_ 0 0 0 REV__ENST00000344337.10_1_3:122144740-122144905:-|nuORF REV__ENST00000344337.10_1_3:122144740-122144905:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 648.4678955078125 2 648.454874 1294.89519 NaN NaN NaN NaN NaN NaN NaN 168.7 1 168.7 168.2 169.2 0 0 0 0 0.23634 1 34575 34575 3.2813 2.088 1 + 12546 20742 7968 7971 12783 12783 0.25954278049812274 ELKKQGFL 8 Unmodified _ELKKQGFL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7879943847656 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 119.44 1 114.91 114.41 115.41 -4.5221 0 0 0 0.21486 1 23551 23551 8.5933 0.68312 1 12547 2140 7969 7972 12784 12784 0.07734948311247081 ELKLERWA 8 Unmodified _ELKLERWA_ 0 0 0 REV__FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant REV__FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26171875 2 522.795466 1043.57638 0.18281 9.5572E-05 0.087348 4.5665E-05 0.27016 0.00014124 522.7954915832996 116.36 0.5923 116.36 116.01 116.61 0 38 16 3 0 0 0 0.97888 1 22946 22946 8.7454 0 1 5698200 + 12548 23538 7970 7973 12785 12785 0.056334491971938405 ELKLERWA 8 Unmodified _ELKLERWA_ 0 0 0 REV__FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant REV__FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2595825195312 2 522.795466 1043.57638 0.061291 3.2043E-05 0.073388 3.8367E-05 0.13468 7.0409E-05 522.7954178080066 120.61 0.73158 116.09 115.72 116.45 -4.5221 53 20 3 0 0 0 0.96408 1 23831 23831 7.609 2.3121 1 6299300 + 12549 23538 7970 7973 12786 12786 0.056334491971938405 ELKLKLIKFL 10 Unmodified _ELKLKLIKFL_ 0 0 0 ENSG00000135931|ENST00000611582|ARMC9;nc|ENSG00000135931|Q7Z3E5-2|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7733764648438 2 622.920667 1243.82678 NaN NaN NaN NaN NaN NaN NaN 169.84 1 169.84 169.34 170.34 0 0 0 0 0.22588 1 34878 34878 1.6526 0 1 12550 3968 7971 7974 12787 12787 0.21462033469947528 ELKMIKKKLN 10 Unmodified _ELKMIKKKLN_ 0 0 0 REV__ENST00000502249.6_1_4:119401492-119409291:+|nuORF REV__ENST00000502249.6_1_4:119401492-119409291:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7557983398438 2 622.891583 1243.76861 NaN NaN NaN NaN NaN NaN NaN 173.14 1 173.14 172.64 173.64 0 0 0 0 0.22588 1 35786 35786 3.2813 0.28607 1 + 12551 22434 7972 7975 12788 12788 0.1564802855302787 ELKQQRTY 8 Unmodified _ELKQQRTY_ 0 0 0 REV__ENST00000506424.2_1_4:186318014-186320148:+|nuORF REV__ENST00000506424.2_1_4:186318014-186320148:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2859497070312 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 89.204 1 89.204 88.704 89.704 0 0 0 0 0.20761 1 17420 17420 19.257 6.7254 1 + 12552 22490 7973 7976 12789 12789 0.03175957329199264 ELKQRYATYRR 11 Unmodified _ELKQRYATYRR_ 0 0 0 REV__ENSG00000153179|ENST00000542104|RASSF3 REV__ENSG00000153179|ENST00000542104|RASSF3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3763427734375 2 742.410049 1482.80554 NaN NaN NaN NaN NaN NaN NaN 174.91 1 170.12 169.62 170.62 -4.7898 0 0 0 0.22632 1 35746 35746 0.11104 0 1 + 12553 17138 7974 7977 12790 12790 0.08345416423117058 ELKRKCVLY 9 Unmodified _ELKRKCVLY_ 0 0 0 REV__nc|ENSG00000181982|Q6ZUS6-3|CCDC149 REV__nc|ENSG00000181982|Q6ZUS6-3|CCDC149 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.330322265625 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 109 1 104.55 104.05 105.05 -4.4518 0 0 0 0.23508 1 20918 20918 4.756 0.42677 1 + 12554 18749 7975 7978 12791 12791 0.08394924422009353 ELKRLCGL 8 Unmodified _ELKRLCGL_ 0 0 0 ENST00000469334.5_1_17:38785039-38787969:-|nuORF;nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|474|22.42|0.3|6.23|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1 ENST00000469334.5_1_17:38785039-38787969:-|nuORF ENST00000469334.5_1_17:38785039-38787969:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2047119140625 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 137.84 1 133 132.5 133.5 -4.84 0 0 0 0.21486 1 26560 26560 1.8442 0 1 12555 542 7976 7979 12792 12792 0.06402721779363674 ELKRQEEY 8 Unmodified _ELKRQEEY_ 0 0 0 REV__ENSG00000047621|ENST00000261250|C12orf4 REV__ENSG00000047621|ENST00000261250|C12orf4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7837524414062 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 90.414 1 90.414 89.914 90.914 0 0 0 0 0.21292 1 17660 17660 14.838 1.7958 1 + 12556 14068 7977 7980 12793 12793 -0.0026405277030789875 ELKTPHTKGL 10 Unmodified _ELKTPHTKGL_ 0 0 0 REV__ENST00000298130.4_1_14:34904345-34904423:-|nuORF REV__ENST00000298130.4_1_14:34904345-34904423:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2192077636719 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 42.715 1 39.996 39.496 40.496 -2.7191 0 0 0 0.22588 1 7995 7995 8.4443 0.59826 1 + 12557 20385 7978 7981 12794 12794 0.08329389914433705 ELKVKKLKKRA 11 Unmodified _ELKVKKLKKRA_ 0 0 0 REV__nc|ENSG00000103852|Q5W5X9-2|TTC23 REV__nc|ENSG00000103852|Q5W5X9-2|TTC23 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 670.7872924804688 2 670.958646 1339.90274 NaN NaN NaN NaN NaN NaN NaN 162.18 1 162.18 161.68 162.68 0 0 0 0 0.22632 1 32591 32591 0 0 1 + 12558 23983 7979 7982 12795 12795 0.24638430370077913 ELLGYMVQKA 10 Unmodified _ELLGYMVQKA_ 0 0 0 ENSG00000133055|ENST00000255416|MYBPH ENSG00000133055|ENST00000255416|MYBPH ENSG00000133055|ENST00000255416|MYBPH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3120727539062 2 576.310092 1150.60563 NaN NaN NaN NaN NaN NaN NaN 94.039 1 89.896 89.396 90.396 -4.1435 0 0 0 0.22588 1 17932 17932 8.7454 1.4562 1 12559 3778 7980 7983 12796 12796 0.036352254311623255 ELLKRERRRID 11 Unmodified _ELLKRERRRID_ 0 0 0 REV__nc|ENSG00000140798|Q96J65-4|ABCC12 REV__nc|ENSG00000140798|Q96J65-4|ABCC12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.386474609375 2 742.444423 1482.87429 NaN NaN NaN NaN NaN NaN NaN 174.3 1 169.51 169.01 170.01 -4.7898 0 0 0 0.23698 1 35605 35605 2.4985 1.169 1 + 12560 12900 7981 7984 12797 12797 0.15217080722823084 ELLKTARSSKA 11 Unmodified _ELLKTARSSKA_ 0 0 0 ENST00000459781.5_1_6:36973566-36979631:+|nuORF;ENST00000464083.5_1_6:36973566-36981682:+|nuORF;FGD2|p.K560Qfs*14|1|0.4|ENSG00000146192|chr6:37027495-37027496|-/G|frameshift_variant;ENSG00000146192|ENST00000274963|FGD2 ENST00000459781.5_1_6:36973566-36979631:+|nuORF ENST00000459781.5_1_6:36973566-36979631:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2794799804688 2 602.356419 1202.69829 NaN NaN NaN NaN NaN NaN NaN 156.24 1 156.24 155.74 156.74 0 0 0 0 0.21513 1 31342 31342 15.248 3.0078 1 12561 4642 7982 7985 12798 12798 0.10504446488880603 ELLLLLVLLL 10 Unmodified _ELLLLLVLLL_ 0 0 0 REV__DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant REV__DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3132934570312 2 576.404318 1150.79408 NaN NaN NaN NaN NaN NaN NaN 79.118 1 75.442 74.942 75.942 -3.676 0 0 0 0.22588 1 15071 15071 1.6526 0 1 + 12562 13641 7983 7986 12799 12799 0.22471826347077695 ELLNGQQA 8 Unmodified _ELLNGQQA_ 0 0 0 REV__AP4E1|p.R114I|1|0.11|ENSG00000081014|chr15:50915566-50915566|G/T|missense_variant REV__AP4E1|p.R114I|1|0.11|ENSG00000081014|chr15:50915566-50915566|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22796630859375 2 436.727249 871.439946 -0.20024 -8.745E-05 0.1628 7.1099E-05 -0.037439 -1.635E-05 436.72729786253467 58.81 0.53027 55.899 55.509 56.039 -2.9105 25 14 2 0 0 0 8448 1 11254 11254 1.7423 0 1 1772500 + 12563 13076 7984 7987 12800 12800 -0.0009166503333517539 ELLNSILEY 9 Unmodified _ELLNSILEY_ 0 0 0 tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1 tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1 tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7936401367188 2 547.292422 1092.57029 0.35927 0.00019662 -0.32415 -0.0001774 0.035119 1.9221E-05 547.2921724100021 125.39 0.66714 120.63 120.23 120.9 -4.7681 44 18 3 0 0 0 0.31598 1 24091 24091 39.95 10.868 1 4105100 12564 26418 7985 7988 12801 12801 0.0277088617501704 ELLRRIQP 8 Unmodified _ELLRRIQP_ 0 0 0 REV__ENST00000369687.2_1_6:84563383-84566987:+|nuORF REV__ENST00000369687.2_1_6:84563383-84566987:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.21240234375 3 342.213581 1023.61891 NaN NaN NaN NaN NaN NaN NaN 58.29 1 58.29 57.79 58.79 0 0 0 0 0.21486 1 11151 11151 3.9444 0 1 + 12565 20968 7986 7989 12802 12802 0.10804844325411977 ELLTKKLRFG 10 Unmodified _ELLTKKLRFG_ 0 0 0 REV__ENST00000509093.5_1_4:83996606-83996789:+|nuORF REV__ENST00000509093.5_1_4:83996606-83996789:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.858154296875 2 602.874248 1203.73394 NaN NaN NaN NaN NaN NaN NaN 168.76 1 163.97 163.47 164.47 -4.7898 0 0 0 0.22588 1 34136 34136 3.9444 0.3479 1 + 12566 22523 7987 7990 12803 12803 0.140225287365638 ELLVTGLLPKP 11 Unmodified _ELLVTGLLPKP_ 0 0 0 nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1 nc|ENSG00000147255|Q8N6C5-2|IGSF1 nc|ENSG00000147255|Q8N6C5-2|IGSF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2617797851562 2 590.371007 1178.72746 NaN NaN NaN NaN NaN NaN NaN 111.69 1 111.69 111.19 112.19 0 0 0 0 0.23324 1 21971 21971 5.7319 1.4026 1 12567 4695 7988 7991 12804 12804 0.14524590785163127 ELMEQVPHI 9 Unmodified _ELMEQVPHI_ 0 0 0 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant;PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000285124.12_1_18:9562972-9595043:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7685546875 2 548.278792 1094.54303 0.32211 0.00017661 0.50325 0.00027592 0.82536 0.00045253 548.2785744900452 120.87 0.47073 120.87 120.64 121.11 0 18 12 2 0 0 0 0.36689 1 23871 23871 26.884 7.6267 1 1290900 12568 5028 7989 7992 12805 12805 -0.00045920637035123946 ELMEQVPHI 9 Unmodified _ELMEQVPHI_ 0 0 0 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant;PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000285124.12_1_18:9562972-9595043:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77587890625 2 548.278792 1094.54303 0.34743 0.00019049 0.19883 0.00010902 0.54627 0.00029951 548.2792009158621 125.59 0.77248 120.83 120.4 121.18 -4.7681 35 21 2 0 0 0 0.72864 1 24133 24133 23.148 3.7094 1 2077200 12569 5028 7989 7992 12806 12806 -0.00045920637035123946 ELMEQVPHI 9 Unmodified _ELMEQVPHI_ 0 0 0 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant;PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000285124.12_1_18:9562972-9595043:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7855834960938 2 548.278792 1094.54303 0.29243 0.00016033 0.22872 0.0001254 0.52115 0.00028573 548.2788116859059 125.49 0.66242 120.84 120.39 121.05 -4.6495 32 18 2 0 0 0 0.28156 1 24155 24155 39.957 26.449 1 1345200 12570 5028 7989 7992 12807 12807 -0.00045920637035123946 ELMHRLRQLYY 11 Unmodified _ELMHRLRQLYY_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21014404296875 4 381.205327 1520.7922 -0.26857 -0.00010238 0.44229 0.0001686 0.17373 6.6225E-05 381.4572114604191 91.472 1.1336 87.547 86.724 87.857 -3.9251 48 32 2 0 0 0 0.66234 1 17833 17833 0.50596 0 1 1054900 + 12571 16781 7990 7993 12808 12808 0.05263842319550349 ELMIKFRE 8 Unmodified _ELMIKFRE_ 0 0 0 REV__tr|U7SRQ6|U7SRQ6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01628PE=4SV=1 REV__tr|U7SRQ6|U7SRQ6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01628PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.28466796875 2 533.291702 1064.56885 NaN NaN NaN NaN NaN NaN NaN 110.7 1 110.7 110.2 111.2 0 0 0 0 0.20618 1 21773 21773 20.454 5.6154 1 + 12572 25037 7991 7994 12809 12809 0.03914973605265004 ELMKKDEPP 9 Unmodified _ELMKKDEPP_ 0 0 0 ENST00000504768.2_1_5:93246475-93410459:-|nuORF;ENST00000502503.1_1_5:93300208-93410459:-|nuORF;nc|ENSG00000113391|Q8WUF8-2|ARB2A;ENST00000506398.6_1_5:93217085-93410459:-|nuORF;FAM172A|p.V310Afs*9|1|0.04|ENSG00000113391|chr5:93784477-93784478|-/GTGCTGAGATGAATGGGTGTGAG|frameshift_variant;ENSG00000113391|ENST00000395965|FAM172A ENST00000504768.2_1_5:93246475-93410459:-|nuORF ENST00000504768.2_1_5:93246475-93410459:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7821044921875 2 543.778625 1085.5427 0.32331 0.00017581 2.1572 0.001173 2.4805 0.0013488 543.7816993707576 115.85 0.17267 115.85 115.77 115.94 0 5 4 2 0 0 0 0.2213 1 22825 22825 1.2148 0 1 929960 12573 10661 7992 7995 12810 12810 0.003346596431129001 ELMLFYRQHFW 11 Unmodified _ELMLFYRQHFW_ 0 0 0 IL1RAPL2|p.G391Wfs*3|1|0.52|ENSG00000189108|chrX:105749078-105749079|-/T|frameshift_variant IL1RAPL2|p.G391Wfs*3|1|0.52|ENSG00000189108|chrX:105749078-105749079|-/T|frameshift_variant IL1RAPL2|p.G391Wfs*3|1|0.52|ENSG00000189108|chrX:105749078-105749079|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.38671875 2 785.387197 1568.75984 NaN NaN NaN NaN NaN NaN NaN 64.788 1 61.741 61.241 62.241 -3.047 0 0 0 0.2367 1 12531 12531 2.9952 0 1 12574 11943 7993 7996 12811 12811 -0.001789450834849049 ELMLFYRQHFW 11 Unmodified _ELMLFYRQHFW_ 0 0 0 IL1RAPL2|p.G391Wfs*3|1|0.52|ENSG00000189108|chrX:105749078-105749079|-/T|frameshift_variant IL1RAPL2|p.G391Wfs*3|1|0.52|ENSG00000189108|chrX:105749078-105749079|-/T|frameshift_variant IL1RAPL2|p.G391Wfs*3|1|0.52|ENSG00000189108|chrX:105749078-105749079|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3890380859375 2 785.387197 1568.75984 NaN NaN NaN NaN NaN NaN NaN 173.37 1 168.58 168.08 169.08 -4.7898 0 0 0 0.23634 1 35360 35360 3.2813 1.9518 1 12575 11943 7993 7996 12812 12812 -0.001789450834849049 ELMQLNYRL 9 Unmodified _ELMQLNYRL_ 0 0 0 REV__ENST00000368433.5_1_1:154962752-154963160:+|nuORF REV__ENST00000368433.5_1_1:154962752-154963160:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2499389648438 2 590.313166 1178.61178 1.0479 0.00061858 -1.6262 -0.00095998 -0.57834 -0.0003414 590.3124058164545 120.62 0.10454 115.98 115.9 116.01 -4.645 4 2 2 0 0 0 0.55979 1 23139 23139 15.847 1.0089 1 825090 + 12576 20939 7994 7997 12813 12813 0.029617436626722338 ELMQLNYRL 9 Unmodified _ELMQLNYRL_ 0 0 0 REV__ENST00000368433.5_1_1:154962752-154963160:+|nuORF REV__ENST00000368433.5_1_1:154962752-154963160:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2499389648438 2 590.313166 1178.61178 1.0479 0.00061858 -1.6262 -0.00095998 -0.57834 -0.0003414 590.3124058164545 120.62 0.10454 115.98 115.9 116.01 -4.645 4 2 2 0 0 0 0.80521 1 23139 23139 15.847 1.0089 1 825090 + 12577 20939 7994 7997 12814 12814 0.029617436626722338 ELMTAIIGN 9 Unmodified _ELMTAIIGN_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2540588378906 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 77.319 1 73.856 73.356 74.356 -3.4633 0 0 0 0.22519 1 15093 15093 16.149 1.3108 1 12578 4192 7995 7998 12815 12815 0.013190054429401243 ELNEVARHR 9 Unmodified _ELNEVARHR_ 0 0 0 ENST00000395941.4_1_12:27107091-27110700:+|nuORF;nc|ENSG00000111790|Q9NVK5-3|FGFR1OP2;nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2;ENSG00000111790|ENST00000229395|FGFR1OP2 ENST00000395941.4_1_12:27107091-27110700:+|nuORF ENST00000395941.4_1_12:27107091-27110700:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21282958984375 3 375.203744 1122.5894 NaN NaN NaN NaN NaN NaN NaN 46.255 1 43.414 42.914 43.914 -2.8409 0 0 0 0.23508 1 8728 8728 6.6304 0.42459 1 12579 2648 7996 7999 12816 12816 0.03301280309278809 ELNHPEPELY 10 Unmodified _ELNHPEPELY_ 0 0 0 REV__ENST00000587257.1_1_19:36426667-36427862:+|nuORF REV__ENST00000587257.1_1_19:36426667-36427862:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7512817382812 2 620.79586 1239.57717 0.60753 0.00037715 -0.33288 -0.00020665 0.27465 0.0001705 620.7956306990569 88.146 4.4847 84.15 83.732 88.216 -3.9953 307 128 5 0 0 0 0.70357 1 16782 16782 10.824 5.0921 1 34587000 + 12580 23272 7997 8000 12817 12817 -0.03303800944422619 ELNHPEPELY 10 Unmodified _ELNHPEPELY_ 0 0 0 REV__ENST00000587257.1_1_19:36426667-36427862:+|nuORF REV__ENST00000587257.1_1_19:36426667-36427862:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 620.79586 1239.57717 0.45284 0.00028112 -0.23355 -0.00014499 0.21928 0.00013613 620.7956696258757 84.154 4.6895 84.154 83.435 88.125 0 -0.0080982 5.1139E-05 NaN 10.824 349 133 4 NaN NaN NaN NaN 0 NaN NaN 0 36884000 + 12581 23272 7997 8000 -0.03303800944422619 ELNHPEPELY 10 Unmodified _ELNHPEPELY_ 0 0 0 REV__ENST00000587257.1_1_19:36426667-36427862:+|nuORF REV__ENST00000587257.1_1_19:36426667-36427862:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 620.79586 1239.57717 0.89576 0.00055609 -0.61009 -0.00037874 0.28567 0.00017734 620.795411315619 88.018 4.4639 84.225 83.758 88.222 -3.7926 0.062812 -0.00041637 NaN 10.824 351 126 4 NaN NaN NaN NaN 0 NaN NaN 0 39512000 + 12582 23272 7997 8000 -0.03303800944422619 ELNHPEPELY 10 Unmodified _ELNHPEPELY_ 0 0 0 REV__ENST00000587257.1_1_19:36426667-36427862:+|nuORF REV__ENST00000587257.1_1_19:36426667-36427862:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 620.79586 1239.57717 0.36598 0.0002272 -0.081054 -5.0318E-05 0.28492 0.00017688 620.7957922191665 87.87 4.745 84.119 83.658 88.403 -3.7501 -0.04271 0.00024048 NaN 10.824 338 135 4 NaN NaN NaN NaN 0 NaN NaN 0 37721000 + 12583 23272 7997 8000 -0.03303800944422619 ELNKVARAAA 10 Unmodified _ELNKVARAAA_ 0 0 0 ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2774658203125 2 521.803823 1041.59309 0.1989 0.00010379 -0.56882 -0.00029681 -0.36992 -0.00019302 521.8037758961462 39.248 0.87669 36.843 36.406 37.282 -2.4049 69 24 4 0 0 0 0.8126 1 7061 7061 19.362 3.5148 1 29794000 12584 1462 7998 8001 12818 12818 0.073959500831279 ELNLERVTL 9 Unmodified _ELNLERVTL_ 0 0 0 NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7930908203125 2 543.811313 1085.60807 0.33193 0.00018051 -0.16151 -8.7832E-05 0.17042 9.2676E-05 543.811184902297 125.41 0.70738 125.41 125.01 125.72 0 48 19 3 0 0 0 0.086396 1 24710 24710 60.074 8.4441 1 11730000 12585 12701 7999 8002 12819 12819 0.06869397160471635 ELNLERVTL 9 Unmodified _ELNLERVTL_ 0 0 0 NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7806396484375 2 543.811313 1085.60807 0.25489 0.00013861 -0.0098281 -5.3446E-06 0.24506 0.00013327 543.8112684268742 129.87 0.78322 125.1 124.71 125.5 -4.7725 52 21 3 0 0 0 0.43219 1 24920 24920 23.79 7.6407 1 8025900 12586 12701 7999 8002 12820 12820 0.06869397160471635 ELNNKKAY 8 Unmodified _ELNNKKAY_ 0 0 0 REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1 REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2647399902344 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 90.298 1 86.52 86.02 87.02 -3.7779 0 0 0 0.22636 1 17280 17280 18.373 0 1 + 12587 24907 8000 8003 12821 12821 0.023328834091330464 ELNPRSSLR 9 Unmodified _ELNPRSSLR_ 0 0 0 IL18R1|p.S74L|1|0.26|ENSG00000115604|chr2:102367987-102367987|C/T|missense_variant IL18R1|p.S74L|1|0.26|ENSG00000115604|chr2:102367987-102367987|C/T|missense_variant IL18R1|p.S74L|1|0.26|ENSG00000115604|chr2:102367987-102367987|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.0483093261719 3 357.868362 1070.58326 -0.094954 -3.3981E-05 -0.19202 -6.8718E-05 -0.28697 -0.0001027 357.8682612546676 50.588 0.7594 50.588 50.371 51.131 0 37 21 2 0 0 0 0.8606 1 9676 9676 7.1017 0 1 1497800 12588 11942 8001 8004 12822 12822 0.050787620777555276 ELNRESQIY 9 Unmodified _ELNRESQIY_ 0 0 0 REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant;REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant;REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3389892578125 2 576.288202 1150.56185 0.047866 2.7585E-05 0.86661 0.00049942 0.91448 0.000527 576.289077198352 78.031 0.84589 74.372 73.954 74.8 -3.6588 49 22 3 0 0 0 0.42844 1 14873 14873 24.021 0.23079 1 5983200 + 12589 18795;25497;25498 8002 8005 12823 12823 -0.007406677416156526 ELNSQEMK 8 Unmodified _ELNSQEMK_ 0 0 0 REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27337646484375 2 489.731674 977.448796 0.61602 0.00030169 0.5483 0.00026852 1.1643 0.0005702 489.73184836536734 122.6 0.64645 117.87 117.5 118.15 -4.731 29 18 2 0 0 0 0.49114 1 23561 23561 28.487 0.85804 1 1919700 + 12590 15577 8003 8006 12824 12824 -0.040830594591511726 ELNWQRLK 8 Unmodified _ELNWQRLK_ 0 0 0 REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7753295898438 2 543.806365 1085.59818 NaN NaN NaN NaN NaN NaN NaN 149.82 1 149.82 149.32 150.32 0 0 0 0 0.22665 1 29993 29993 2.643 2.3916 1 + 12591 16269 8004 8007 12825 12825 0.05880253945747427 ELNYEASLYT 10 Unmodified _ELNYEASLYT_ 0 0 0 REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2841796875 2 601.782418 1201.55028 0.088631 5.3337E-05 0.34059 0.00020496 0.42922 0.0002583 601.7825533426534 58.98 0.70461 58.98 58.617 59.321 0 57 19 4 0 0 0 0.53552 1 11360 11360 22.736 0.98964 1 28997000 + 12592 19228 8005 8008 12826 12826 -0.0424290955561446 ELPARGPAGL 10 Unmodified _ELPARGPAGL_ 0 0 0 ENST00000608391.1_1_21:37692244-37692574:-|nuORF ENST00000608391.1_1_21:37692244-37692574:-|nuORF ENST00000608391.1_1_21:37692244-37692574:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25921630859375 2 490.779816 979.545079 -0.25071 -0.00012304 0.44086 0.00021636 0.19015 9.3323E-05 490.77997762996324 106.46 0.83494 102.2 101.62 102.46 -4.2638 36 23 2 0 0 0 0.52179 1 20975 20975 26.268 4.5215 1 3302400 12593 11763 8006 8009 12827 12827 0.054488761630864246 ELPDEGTL 8 Unmodified _ELPDEGTL_ 0 0 0 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2152404785156 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 133.66 1 128.78 128.28 129.28 -4.8726 0 0 0 0.21452 1 25683 25683 13.508 4.1604 1 12594 12082 8007 8010 12828 12828 -0.028581933643749835 ELPELGTGY 9 Unmodified _ELPELGTGY_ 0 0 0 REV__ENSG00000076650|ENST00000170564|GPATCH1 REV__ENSG00000076650|ENST00000170564|GPATCH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2653503417969 2 489.742565 977.470577 -0.28647 -0.0001403 1.0434 0.00051101 0.75696 0.00037072 489.74333159062274 84.085 0.35747 80.374 80.097 80.454 -3.7117 12 9 2 0 0 0 0.72864 1 16006 16006 16.942 6.1184 1 711130 + 12595 14352 8008 8011 12829 12829 -0.01905931438943753 ELPFTLTLSPQ 11 Unmodified _ELPFTLTLSPQ_ 0 0 0 REV__ENST00000512466.1_1_5:311346-314627:+|nuORF REV__ENST00000512466.1_1_5:311346-314627:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7587280273438 2 623.339904 1244.66525 0.42913 0.0002675 -2.9254 -0.0018235 -2.4962 -0.001556 623.3383227821287 164.88 0.17641 159.83 159.76 159.94 -5.0446 5 4 2 0 0 0 0.89764 1 32188 32188 2.4985 0 1 4871900 + 12596 22557 8009 8012 12830 12830 0.05270819646216296 ELPINQPLY 9 Unmodified _ELPINQPLY_ 0 0 0 REV__ENSG00000072657|ENST00000261180|TRHDE REV__ENSG00000072657|ENST00000261180|TRHDE MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7753295898438 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 149.84 1 149.84 149.34 150.34 0 0 0 0 0.23508 1 29996 29996 12.532 0.89125 1 + 12597 14289 8010 8013 12831 12831 0.03634609757477847 ELPLGFKKY 9 Unmodified _ELPLGFKKY_ 0 0 0 REV__CHD2|p.D1266Mfs*19|1|0.06|ENSG00000173575|chr15:92997311-92997312|-/AC|frameshift_variant REV__CHD2|p.D1266Mfs*19|1|0.06|ENSG00000173575|chr15:92997311-92997312|-/AC|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7686767578125 2 547.815867 1093.61718 0.32516 0.00017813 -0.36302 -0.00019887 -0.037868 -2.0745E-05 548.3193586787208 123.17 0.10492 123.17 123.1 123.2 0 4 2 2 0 0 0 0.80521 1 24283 24283 15.847 12.251 1 547820 + 12598 13398 8011 8014 12832 12832 0.07411790516812289 ELPSEEVL 8 Unmodified _ELPSEEVL_ 0 0 0 nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3 nc|ENSG00000133318|O95197-7|RTN3 nc|ENSG00000133318|O95197-7|RTN3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384033203125 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 105.31 1 101.22 100.72 101.72 -4.0913 0 0 0 0.21323 1 20253 20253 14.582 1.0738 1 12599 3797 8012 8015 12833 12833 -0.0009733381323258072 ELQETPSTG 9 Unmodified _ELQETPSTG_ 0 0 0 REV__ENSG00000279804|ENST00000624297|PRAMEF18 REV__ENSG00000279804|ENST00000624297|PRAMEF18 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24505615234375 2 481.227279 960.440005 NaN NaN NaN NaN NaN NaN NaN 75.329 1 71.914 71.414 72.414 -3.4151 0 0 0 0.13613 1 14692 14692 32.305 1.6689 1 + 12600 19951 8013 8016 12834 12834 -0.041797098239840125 ELQGLGLSF 9 Unmodified _ELQGLGLSF_ 0 0 0 ENST00000497613.2_1_8:145658938-145666334:-|nuORF;nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL ENST00000497613.2_1_8:145658938-145666334:-|nuORF ENST00000497613.2_1_8:145658938-145666334:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76837158203125 2 482.260925 962.507297 0.029004 1.3987E-05 0.12212 5.8895E-05 0.15113 7.2882E-05 482.26091873292415 131.25 0.89224 126.62 126.1 127 -4.6359 59 24 3 0 0 0 0.54076 1 25775 25775 26.884 3.7352 1 9551300 12601 5275 8014 8017 12835 12835 0.024543651776298248 ELQIDSCSSSE 11 Unmodified _ELQIDSCSSSE_ 0 0 0 nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1;BRCA1|p.K739Ifs*15|1|0.31|ENSG00000012048|chr17:43093315-43093316|-/TA|frameshift_variant nc|ENSG00000012048|P38398-8|BRCA1 nc|ENSG00000012048|P38398-8|BRCA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 599.3915405273438 2 599.250625 1196.4867 NaN NaN NaN NaN NaN NaN NaN 169.94 1 165.07 164.57 165.57 -4.873 0 0 0 0.22632 1 33603 33603 0.0059557 0 1 12602 1083 8015 8018 12836 12836 -0.10368638055001611 ELQIFYFLFFS 11 Unmodified _ELQIFYFLFFS_ 0 0 0 nc|ENSG00000176290|Q96R72|OR4K3 nc|ENSG00000176290|Q96R72|OR4K3 nc|ENSG00000176290|Q96R72|OR4K3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 485.25933837890625 3 485.25159 1452.73294 NaN NaN NaN NaN NaN NaN NaN 107.81 1 103.49 102.99 103.99 -4.32 0 0 0 0.22632 1 21238 21238 0.026206 0 1 12603 12478 8016 8019 12837 12837 0.024682695769797647 ELQKKEAKI 9 Unmodified _ELQKKEAKI_ 0 0 0 nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7767944335938 2 543.829506 1085.64446 0.52691 0.00028655 -0.14432 -7.8484E-05 0.3826 0.00020807 543.8296247630424 107.2 0.47556 107.2 106.97 107.44 0 23 13 2 0 0 0 0.62921 1 21039 21039 24.021 0 1 2077900 12604 4265 8017 8020 12838 12838 0.10506274057183873 ELQKSISGRMI 11 Unmodified _ELQKSISGRMI_ 0 0 0 ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7529907226562 2 631.35028 1260.68601 1.0762 0.00067945 0.8396 0.00053008 1.9158 0.0012095 631.8553746610958 153.46 0.17815 148.69 148.62 148.8 -4.7684 9 4 3 0 0 0 0.94227 1 30492 30492 2.2828 0 1 2669100 12605 7544 8018 8021 12839 12839 0.06609086754201599 ELQLCKNCFY 10 Unmodified _ELQLCKNCFY_ 0 0 0 ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant;ZMYND11|p.L498Afs*3|1|0.3|ENSG00000015171|chr10:248592-248602|GAGAAGCTCTG/-|frameshift_variant;nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7735595703125 2 630.791209 1259.56787 0.23484 0.00014813 -1.3093 -0.00082591 -1.0745 -0.00067778 630.790238153544 90.775 0.13729 90.775 90.722 90.859 0 6 3 2 0 0 0 0.51199 1 17746 17746 24.021 1.3625 1 1087600 12606 1108 8019 8022 12840 12840 -0.05153608825958145 ELQLCKNCFY 10 Unmodified _ELQLCKNCFY_ 0 0 0 ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant;ZMYND11|p.L498Afs*3|1|0.3|ENSG00000015171|chr10:248592-248602|GAGAAGCTCTG/-|frameshift_variant;nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.775390625 2 630.791209 1259.56787 NaN NaN NaN NaN NaN NaN NaN 95.162 1 91.112 90.612 91.612 -4.0496 0 0 0 0.19577 1 18650 18650 29.082 2.1979 1 12607 1108 8019 8022 12841 12841 -0.05153608825958145 ELQQAKAIG 9 Unmodified _ELQQAKAIG_ 0 0 0 REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7235107421875 2 479.271824 956.529095 0.096552 4.6275E-05 0.36037 0.00017272 0.45693 0.00021899 479.27180379856253 37.341 0.48448 34.994 34.754 35.238 -2.3479 29 13 3 0 0 0 0.71527 1 6619 6619 19.257 2.3147 1 1569700 + 12608 24070 8020 8023 12842 12842 0.049091699261907706 ELQQAKAIG 9 Unmodified _ELQQAKAIG_ 0 0 0 REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7237548828125 2 479.271824 956.529095 0.21371 0.00010242 0.077867 3.7319E-05 0.29157 0.00013974 479.27168069478154 37.305 0.52129 34.968 34.701 35.222 -2.3375 30 14 3 0 0 0 0.58699 1 6629 6629 32.305 1.6689 1 1448300 + 12609 24070 8020 8023 12843 12843 0.049091699261907706 ELQQKKCQK 9 Unmodified _ELQQKKCQK_ 0 0 0 REV__NLRC5|p.P816Rfs*30|1|0.28|ENSG00000140853|chr16:57031430-57031430|C/-|frameshift_variant REV__NLRC5|p.P816Rfs*30|1|0.28|ENSG00000140853|chr16:57031430-57031430|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.21124267578125 3 378.209619 1131.60703 NaN NaN NaN NaN NaN NaN NaN 135.09 1 130.45 129.95 130.95 -4.6399 0 0 0 0.23508 1 26646 26646 2.4985 0 1 + 12610 16601 8021 8024 12844 12844 0.04648859519920734 ELQQKKGTY 9 Unmodified _ELQQKKGTY_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7859497070312 2 547.795663 1093.57677 0.27332 0.00014972 -0.49419 -0.00027071 -0.22087 -0.00012099 547.7954031844589 89.306 0.35816 85.528 85.38 85.738 -3.7779 13 9 2 0 0 0 0.19983 1 17099 17099 2.6312 0 1 1138800 12611 12458 8022 8025 12845 12845 0.03372824126404339 ELQRAQKRL 9 Unmodified _ELQRAQKRL_ 0 0 0 REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2117004394531 3 381.231523 1140.67274 -0.40639 -0.00015493 0.30356 0.00011573 -0.10283 -3.9203E-05 381.2315876018993 52.103 0.4804 49.221 48.934 49.414 -2.8824 19 13 2 0 0 0 0.58077 1 9885 9885 14.405 0.79051 1 1828000 + 12612 15131 8023 8026 12846 12846 0.10803016757131445 ELQRAQKRL 9 Unmodified _ELQRAQKRL_ 0 0 0 REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 381.231523 1140.67274 0.11308 4.3109E-05 -0.14595 -5.5639E-05 -0.032869 -1.2531E-05 381.231412463376 49.326 0.31478 49.326 49.197 49.512 0 0.049235 -0.0003171 NaN 14.405 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 752000 + 12613 15131 8023 8026 0.10803016757131445 ELQRAQKRL 9 Unmodified _ELQRAQKRL_ 0 0 0 REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 381.231523 1140.67274 -0.40639 -0.00015493 0.30356 0.00011573 -0.10283 -3.9203E-05 381.2315876018993 52.103 0.4804 49.221 48.934 49.414 -2.8824 -0.055402 0.000197 NaN 14.405 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1828000 + 12614 15131 8023 8026 0.10803016757131445 ELQRAQKRL 9 Unmodified _ELQRAQKRL_ 0 0 0 REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 381.231523 1140.67274 0.046571 1.7754E-05 0.24703 9.4177E-05 0.2936 0.00011193 381.2315436218774 52.37 0.41682 49.283 49.025 49.442 -3.0876 0.0061672 0.00013235 NaN 14.405 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1115800 + 12615 15131 8023 8026 0.10803016757131445 ELQRFFRERKR 11 Unmodified _ELQRFFRERKR_ 0 0 0 REV__SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant REV__SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2628173828125 3 522.298819 1563.87463 NaN NaN NaN NaN NaN NaN NaN 127.7 1 122.9 122.4 123.4 -4.7958 0 0 0 0.22632 1 24510 24510 0.00056442 0 1 + 12616 24760 8024 8027 12847 12847 0.11524500442692442 ELQRFPQFDE 10 Unmodified _ELQRFPQFDE_ 0 0 0 REV__ENSG00000147596|ENST00000276594|PRDM14 REV__ENSG00000147596|ENST00000276594|PRDM14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2176513671875 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 57.226 1 54.05 53.55 54.55 -3.1761 0 0 0 0.22588 1 10663 10663 5.7834 0 1 + 12617 16944 8025 8028 12848 12848 -0.026887096788186682 ELQRQKRK 8 Unmodified _ELQRQKRK_ 0 0 0 ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.775634765625 2 543.330539 1084.64652 0.56184 0.00030527 -2.9852 -0.0016219 -2.4234 -0.0013167 543.8315382172137 122.04 0.13733 117.35 117.27 117.4 -4.6873 5 3 2 0 0 0 0.87562 1 23439 23439 0.30703 0.24304 1 1299400 12618 5208 8026 8029 12849 12849 0.10758747585668971 ELQSERNYL 9 Unmodified _ELQSERNYL_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.318359375 2 576.288202 1150.56185 0.37987 0.00021892 0.43807 0.00025246 0.81795 0.00047137 576.2887592090354 74.258 0.80123 74.258 73.944 74.745 0 44 22 3 0 0 0 0.62921 1 14393 14393 24.021 2.4836 1 5911500 12619 2455 8027 8030 12850 12850 -0.007406677416156526 ELQSLAEEY 9 Unmodified _ELQSLAEEY_ 0 0 0 REV__ENSG00000185163|ENST00000397333|DDX51 REV__ENSG00000185163|ENST00000397333|DDX51 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2713012695312 2 541.256037 1080.49752 -0.01973 -1.0679E-05 0.26485 0.00014335 0.24512 0.00013267 541.2561113554003 65.848 0.62006 65.848 65.552 66.172 0 43 17 3 0 0 0 0.52242 1 12746 12746 29.082 0 1 17371000 + 12620 18945 8028 8031 12851 12851 -0.03950867618414122 ELQSQIKKI 9 Unmodified _ELQSQIKKI_ 0 0 0 nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7774047851562 2 543.829506 1085.64446 -0.077855 -4.234E-05 0.48168 0.00026195 0.40383 0.00021961 543.8297374346329 111.42 0.62956 106.93 106.57 107.2 -4.4915 41 17 3 0 0 0 0.36034 1 21398 21398 29.082 0 1 3775500 12621 1842 8029 8032 12852 12852 0.1050627405720661 ELQTKKPHL 9 Unmodified _ELQTKKPHL_ 0 0 0 REV__ZSCAN16|p.H247Lfs*46|1|0.06|ENSG00000196812|chr6:28129642-28129643|-/TGTCATTT|frameshift_variant REV__ZSCAN16|p.H247Lfs*46|1|0.06|ENSG00000196812|chr6:28129642-28129643|-/TGTCATTT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77587890625 2 547.321848 1092.62914 0.33856 0.0001853 2.6549 0.0014531 2.9935 0.0016384 547.8245635186029 125.74 0.17721 120.97 120.83 121.01 -4.7681 7 4 2 0 0 0 0.8204 1 24133 24133 13.508 7.776 1 474050 + 12622 19282 8030 8033 12853 12853 0.08653407259998858 ELQTLRTVK 9 Unmodified _ELQTLRTVK_ 0 0 0 REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7830200195312 2 544.327131 1086.63971 0.32845 0.00017879 0.99955 0.00054408 1.328 0.00072286 544.8271445300096 138.18 0.1394 133.34 133.27 133.41 -4.84 5 3 2 0 0 0 0.69192 1 26613 26613 20.454 0 1 603270 + 12623 15577 8031 8034 12854 12854 0.09985389914436382 ELQTPLLHQ 9 Unmodified _ELQTPLLHQ_ 0 0 0 REV__INO80D|p.V883Gfs*2|1|0.31|ENSG00000114933|chr2:206004804-206004804|A/-|frameshift_variant REV__INO80D|p.V883Gfs*2|1|0.31|ENSG00000114933|chr2:206004804-206004804|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20184326171875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 114.89 1 110.34 109.84 110.84 -4.555 0 0 0 0.23508 1 22060 22060 4.5289 1.2092 1 + 12624 15394 8032 8035 12855 12855 0.0461712798901317 ELREVHGER 9 Unmodified _ELREVHGER_ 0 0 0 REV__ENSG00000276231|ENST00000619866|PIK3R6 REV__ENSG00000276231|ENST00000619866|PIK3R6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2147216796875 3 375.53175 1123.57342 -0.20008 -7.5136E-05 0.3848 0.0001445 0.18472 6.9367E-05 375.5316854180786 19.263 0.27753 19.263 19.172 19.45 0 10 7 2 0 0 0 0.85539 1 3151 3151 3.0723 2.5663 1 330160 + 12625 19938 8033 8036 12856 12856 0.016575740723965282 ELREVHGER 9 Unmodified _ELREVHGER_ 0 0 0 REV__ENSG00000276231|ENST00000619866|PIK3R6 REV__ENSG00000276231|ENST00000619866|PIK3R6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.53175 1123.57342 -0.2266 -8.5094E-05 0.24049 9.031E-05 0.013888 5.2155E-06 375.53177421120483 20.728 0.31157 19.343 19.132 19.444 -1.3847 0.040303 -6.6512E-05 NaN 3.0723 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 545340 + 12626 19938 8033 8036 0.016575740723965282 ELRLFFLKDTL 11 Unmodified _ELRLFFLKDTL_ 0 0 0 L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|99|2|anti-sense L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|99|2|anti-sense L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|99|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2363586425781 3 465.606255 1393.79694 NaN NaN NaN NaN NaN NaN NaN 66.809 1 66.809 66.309 67.309 0 0 0 0 0.23698 1 12907 12907 1.3296 0 1 12627 12028 8034 8037 12857 12857 0.11579049733927604 ELRLIHADI 9 Unmodified _ELRLIHADI_ 0 0 0 nc|ENSG00000126970|Q9NQZ6-2|ZC4H2;ENST00000488608.5_1_X:64139959-64196305:-|nuORF;ENST00000492653.5_1_X:64139109-64196305:-|nuORF;nc|ENSG00000126970|Q9NQZ6-4|ZC4H2;ZC4H2|p.I151Sfs*36|1|0.32|ENSG00000126970|chrX:64919153-64919153|G/-|frameshift_variant;nc|ENSG00000126970|Q9NQZ6-3|ZC4H2;nc|ENSG00000126970|Q9NQZ6-5|ZC4H2;ENSG00000126970|ENST00000374839|ZC4H2 nc|ENSG00000126970|Q9NQZ6-2|ZC4H2 nc|ENSG00000126970|Q9NQZ6-2|ZC4H2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20086669921875 3 360.545108 1078.61349 -0.51476 -0.0001856 -0.85199 -0.00030718 -1.3668 -0.00049278 360.54479540778516 87.931 0.20856 84.18 84.118 84.327 -3.7501 6 5 2 0 0 0 0.8799 1 16815 16815 2.4985 0 1 629090 12628 3458 8035 8038 12858 12858 0.07733120742932442 ELRLKQEY 8 Unmodified _ELRLKQEY_ 0 0 0 PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENSG00000068976|ENST00000164139|PYGM;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012023925781 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 74.401 1 70.725 70.225 71.225 -3.6764 0 0 0 0.21486 1 14067 14067 3.2813 0 1 12629 1985 8036 8039 12859 12859 0.0461712798901317 ELRLRSTDP 9 Unmodified _ELRLRSTDP_ 0 0 0 REV__ENSG00000148602|ENST00000372105|LRIT1 REV__ENSG00000148602|ENST00000372105|LRIT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7724609375 2 543.798737 1085.58292 NaN NaN NaN NaN NaN NaN NaN 117.27 1 112.91 112.41 113.41 -4.3585 0 0 0 0.23508 1 22572 22572 10.824 1.4765 1 + 12630 16983 8037 8040 12860 12860 0.043553423578941874 ELRNLTVEL 9 Unmodified _ELRNLTVEL_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7965087890625 2 543.811313 1085.60807 0.067757 3.6847E-05 0.089593 4.8722E-05 0.15735 8.5569E-05 543.811333853168 129.93 0.76999 125.09 124.66 125.43 -4.8355 63 21 4 0 0 0 0.19171 1 24889 24889 38.176 0 1 8168200 12631 3001 8038 8041 12861 12861 0.06869397160471635 ELRPCQDL 8 Unmodified _ELRPCQDL_ 0 0 0 REV__ENSG00000196159|ENST00000394329|FAT4 REV__ENSG00000196159|ENST00000394329|FAT4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.1754455566406 3 325.163898 972.469866 NaN NaN NaN NaN NaN NaN NaN 91.703 1 91.703 91.203 92.203 0 0 0 0 0.21486 1 17927 17927 1.4819 0 1 + 12632 19222 8039 8042 12862 12862 -0.017470493596420056 ELRPCQDL 8 Unmodified _ELRPCQDL_ 0 0 0 REV__ENSG00000196159|ENST00000394329|FAT4 REV__ENSG00000196159|ENST00000394329|FAT4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.1651611328125 3 325.163898 972.469866 NaN NaN NaN NaN NaN NaN NaN 89.021 1 85.229 84.729 85.729 -3.7926 0 0 0 0.21486 1 17418 17418 3.5965 0 1 + 12633 19222 8039 8042 12863 12863 -0.017470493596420056 ELRQKEEL 8 Unmodified _ELRQKEEL_ 0 0 0 REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2788696289062 2 522.787838 1043.56112 -0.01014 -5.3011E-06 -0.028462 -1.488E-05 -0.038602 -2.0181E-05 522.7878984679782 79.184 0.59731 75.508 75.129 75.727 -3.676 26 16 2 0 0 0 0.72565 1 15078 15078 26.884 0 1 2867100 + 12634 13202 8040 8043 12864 12864 0.04108537609340601 ELRQWAGAI 9 Unmodified _ELRQWAGAI_ 0 0 0 REV__ENSG00000077522|ENST00000366578|ACTN2 REV__ENSG00000077522|ENST00000366578|ACTN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.257080078125 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 128.05 1 123.31 122.81 123.81 -4.7408 0 0 0 0.22962 1 24637 24637 14.838 0.25658 1 + 12635 14367 8041 8044 12865 12865 0.03640278537386621 ELRRQLRLLRM 11 Unmodified _ELRRQLRLLRM_ 0 0 0 REV__ENST00000380393.7_1_20:2844875-2903853:+|nuORF REV__ENST00000380393.7_1_20:2844875-2903853:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3801879882812 2 742.453736 1482.89292 NaN NaN NaN NaN NaN NaN NaN 173.45 1 168.55 168.05 169.05 -4.8977 0 0 0 0.23698 1 34437 34437 1.3295 0 1 + 12636 19687 8042 8045 12866 12866 0.17078919093046352 ELRRQQYEQCM 11 Unmodified _ELRRQQYEQCM_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.T595Lfs*44|1|0.28|ENSG00000197694|chr9:128582823-128582823|A/-|frameshift_variant nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.370361328125 2 742.34266 1482.67077 NaN NaN NaN NaN NaN NaN NaN 173.37 1 168.58 168.08 169.08 -4.7898 0 0 0 0.23698 1 35359 35359 2.7352 0 1 12637 7390 8043 8046 12867 12867 -0.051261481052961244 ELRRREAHWRR 11 Unmodified _ELRRREAHWRR_ 0 0 0 REV__ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant REV__ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2809448242188 3 522.294179 1563.86071 -0.0073299 -3.8283E-06 0.78142 0.00040813 0.77409 0.0004043 522.6287761780997 118.08 0.21062 113.58 113.39 113.6 -4.502 6 5 2 0 0 0 0.96216 1 23242 23242 0.08335 0 1 1123200 + 12638 14974 8044 8047 12868 12868 0.10133267734227047 ELRRVALQC 9 Unmodified _ELRRVALQC_ 0 0 0 REV__ENSG00000129932|ENST00000427575|DOHH REV__ENSG00000129932|ENST00000427575|DOHH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79443359375 2 544.305675 1086.5968 0.22281 0.00012128 -1.2563 -0.00068383 -1.0335 -0.00056255 544.8066345335914 88.617 0.1059 88.617 88.542 88.647 0 4 2 2 0 0 0 0.81703 1 17294 17294 6.2058 4.146 1 700590 + 12639 15976 8045 8048 12869 12869 0.05696296585369964 ELRSQRRQR 9 Unmodified _ELRSQRRQR_ 0 0 0 REV__ENST00000454190.6_2_3:9956219-9957488:+|nuORF REV__ENST00000454190.6_2_3:9956219-9957488:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 614.802001953125 2 614.852701 1227.69085 NaN NaN NaN NaN NaN NaN NaN 173.15 1 173.15 172.65 173.65 0 0 0 0 0.23508 1 35789 35789 10.824 0.75 1 + 12640 17603 8046 8049 12870 12870 0.08611151731838618 ELRTSLLP 8 Unmodified _ELRTSLLP_ 0 0 0 REV__ENST00000560079.6_1_15:85345654-85346083:+|nuORF REV__ENST00000560079.6_1_15:85345654-85346083:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1651611328125 3 310.18692 927.538931 NaN NaN NaN NaN NaN NaN NaN 12.872 1 11.742 11.242 12.242 -1.1293 0 0 0 0.2396 1 1618 1618 0.12286 0.12286 1 + 12641 23037 8047 8050 12871 12871 0.0722635793158588 ELRWREWSKWF 11 Unmodified _ELRWREWSKWF_ 0 0 0 REV__GLP1R|p.R414W|1|0.33|ENSG00000112164|chr6:39085921-39085921|C/T|missense_variant REV__GLP1R|p.R414W|1|0.33|ENSG00000112164|chr6:39085921-39085921|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2778930664062 3 541.612404 1621.81538 NaN NaN NaN NaN NaN NaN NaN 41.432 1 38.798 38.298 39.298 -2.6348 0 0 0 0.22632 1 7737 7737 0.094841 0 1 + 12642 23577 8048 8051 12872 12872 0.029346044284693562 ELRWRRWRIRD 11 Unmodified _ELRWRRWRIRD_ 0 0 0 REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7669677734375 3 547.97808 1640.91241 NaN NaN NaN NaN NaN NaN NaN 65.854 1 65.854 65.354 66.354 0 0 0 0 0.23698 1 12707 12707 0.45452 0.45452 1 + 12643 20135 8049 8052 12873 12873 0.11759011428148369 ELRWRRWRIRD 11 Unmodified _ELRWRRWRIRD_ 0 0 0 REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7742309570312 3 547.97808 1640.91241 0.17256 9.4558E-05 0.43546 0.00023862 0.60802 0.00033318 547.977913242646 153.17 0.10048 147.9 147.81 147.92 -5.2669 4 2 2 0 0 0 0.96216 1 29683 29683 1.3296 0.96297 1 845680 + 12644 20135 8049 8052 12874 12874 0.11759011428148369 ELSAYSGAAS 10 Unmodified _ELSAYSGAAS_ 0 0 0 ENST00000238961.8_1_10:102719216-102721644:+|nuORF ENST00000238961.8_1_10:102719216-102721644:+|nuORF ENST00000238961.8_1_10:102719216-102721644:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7230224609375 2 478.221997 954.429441 0.021166 1.0122E-05 -0.14305 -6.8411E-05 -0.12189 -5.8288E-05 478.22187821818136 49.676 1.2383 46.677 45.999 47.237 -2.999 93 35 3 0 0 0 0.67319 1 9185 9185 13.906 1.3745 1 15234000 12645 8176 8050 8053 12875 12875 -0.04959692478416855 ELSDEEVEH 9 Unmodified _ELSDEEVEH_ 0 0 0 SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant;nc|ENSG00000140386|Q9BY12-3|SCAPER;ENST00000303521.10_1_15:76673691-77134263:-|nuORF;RCN2-SCAPER|1|fusion;ENSG00000140386|ENST00000563290|SCAPER SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7727661132812 2 543.732926 1085.4513 NaN NaN NaN NaN NaN NaN NaN 162.79 1 158 157.5 158.5 -4.7898 0 0 0 0.23508 1 32406 32406 7.9102 0 1 12646 4295 8051 8054 12876 12876 -0.08800932520512106 ELSDHVSTPPY 11 Unmodified _ELSDHVSTPPY_ 0 0 0 REV__sp|F5H9T4|UL09_HCMVMMembraneglycoproteinUL9OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL9PE=3SV=1 REV__sp|F5H9T4|UL09_HCMVMMembraneglycoproteinUL9OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL9PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7633056640625 2 622.793318 1243.57208 0.4514 0.00028113 0.06485 4.0388E-05 0.51625 0.00032152 622.793359760121 84.851 0.73122 84.851 84.591 85.322 0 51 20 3 0 0 0 0.45791 1 16626 16626 32.786 5.1569 1 4498000 + 12647 24674 8052 8055 12877 12877 -0.03996104807015399 ELSDSHEL 8 Unmodified _ELSDSHEL_ 0 0 0 REV__ENST00000526955.1_1_11:125281302-125301285:+|nuORF REV__ENST00000526955.1_1_11:125281302-125301285:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2593994140625 2 465.214172 928.413791 NaN NaN NaN NaN NaN NaN NaN 127.65 1 122.95 122.45 123.45 -4.6998 0 0 0 0.21323 1 24558 24558 14.582 0 1 + 12648 17776 8053 8056 12878 12878 -0.053279789954672196 ELSDWLTP 8 Unmodified _ELSDWLTP_ 0 0 0 REV__ENSG00000248905|ENST00000616417|FMN1 REV__ENSG00000248905|ENST00000616417|FMN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23919677734375 2 480.737283 959.460012 0.050048 2.406E-05 0.21863 0.0001051 0.26867 0.00012916 480.7374587206135 109.91 0.54607 109.91 109.75 110.29 0 21 15 2 0 0 0 0.70613 1 21594 21594 13.508 1.8676 1 1393400 + 12649 19818 8054 8057 12879 12879 -0.021339140933832823 ELSFVVVH 8 Unmodified _ELSFVVVH_ 0 0 0 REV__ENSG00000196730|ENST00000408954|DAPK1 REV__ENSG00000196730|ENST00000408954|DAPK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2583312988281 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 109.76 1 105.58 105.08 106.08 -4.1826 0 0 0 0.21486 1 21123 21123 10.183 0.83596 1 + 12650 19276 8055 8058 12880 12880 0.03470686385821864 ELSGVPWQQ 9 Unmodified _ELSGVPWQQ_ 0 0 0 REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3 REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2686157226562 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 105.76 1 105.76 105.26 106.26 0 0 0 0 0.09086 1 20784 20784 8.9129 0 1 + 12651 14446 8056 8059 12881 12881 -0.011194204534831442 ELSHPSPVP 9 Unmodified _ELSHPSPVP_ 0 0 0 ENSG00000161328|ENST00000270115|LRRC56 ENSG00000161328|ENST00000270115|LRRC56 ENSG00000161328|ENST00000270115|LRRC56 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7710266113281 2 481.750724 961.486896 NaN NaN NaN NaN NaN NaN NaN 74.229 1 70.552 70.052 71.052 -3.6764 0 0 0 0.21065 1 14034 14034 20.454 2.3073 1 12652 5289 8057 8060 12882 12882 0.004611945178112364 ELSKSTLSV 9 Unmodified _ELSKSTLSV_ 0 0 0 CON__ENSEMBL:ENSBTAP00000024462 CON__ENSEMBL:ENSBTAP00000024462 CON__ENSEMBL:ENSBTAP00000024462 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.769287109375 2 482.27149 962.528426 0.39021 0.00018819 -0.90401 -0.00043598 -0.5138 -0.00024779 482.27092828375874 88.074 0.70567 84.078 83.656 84.362 -3.9953 43 19 3 0 0 0 0.11519 1 16754 16754 53.404 0 1 3866300 + 12653 644 8058 8061 12883 12883 0.04566330486500192 ELSKSTLSV 9 Unmodified _ELSKSTLSV_ 0 0 0 CON__ENSEMBL:ENSBTAP00000024462 CON__ENSEMBL:ENSBTAP00000024462 CON__ENSEMBL:ENSBTAP00000024462 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77886962890625 2 482.27149 962.528426 0.26909 0.00012978 0.093249 4.4971E-05 0.36234 0.00017475 482.27156902535813 93.434 0.53513 89.29 89.015 89.55 -4.1435 24 15 2 0 0 0 0.31673 1 17816 17816 47.749 9.7747 1 1237700 + 12654 644 8058 8061 12884 12884 0.04566330486500192 ELSKSTLSV 9 Unmodified _ELSKSTLSV_ 0 0 0 CON__ENSEMBL:ENSBTAP00000024462 CON__ENSEMBL:ENSBTAP00000024462 CON__ENSEMBL:ENSBTAP00000024462 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78326416015625 2 482.27149 962.528426 -0.020552 -9.9115E-06 0.14238 6.8666E-05 0.12183 5.8755E-05 482.2715576496006 93.244 0.65755 89.4 89.017 89.674 -3.844 27 18 2 0 0 0 0.71527 1 17812 17812 9.3831 3.6513 1 1675300 + 12655 644 8058 8061 12885 12885 0.04566330486500192 ELSKSTLSV 9 Unmodified _ELSKSTLSV_ 0 0 0 CON__ENSEMBL:ENSBTAP00000024462 CON__ENSEMBL:ENSBTAP00000024462 CON__ENSEMBL:ENSBTAP00000024462 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 482.27149 962.528426 0.047642 2.2976E-05 0.58203 0.00028069 0.62967 0.00030367 482.27160607739984 93.195 0.58717 89.204 88.933 89.521 -3.9907 -0.094052 0.00034284 NaN 47.749 21 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1205300 + 12656 644 8058 8061 0.04566330486500192 ELSLLEDP 8 Unmodified _ELSLLEDP_ 0 0 0 ENST00000471992.1_1_17:27185137-27185227:+|nuORF;nc|ENSG00000132591|O75616-2|ERAL1;ENSG00000132591|ENST00000254928|ERAL1 ENST00000471992.1_1_17:27185137-27185227:+|nuORF ENST00000471992.1_1_17:27185137-27185227:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2378845214844 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 79.784 1 79.784 79.284 80.284 0 0 0 0 0.14536 1 15526 15526 38.151 0 1 12657 3745 8059 8062 12886 12886 -0.0009733381323258072 ELSLTVPLLFL 11 Unmodified _ELSLTVPLLFL_ 0 0 0 REV__ENSG00000177098|ENST00000324727|SCN4B REV__ENSG00000177098|ENST00000324727|SCN4B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7660522460938 2 622.878665 1243.74278 NaN NaN NaN NaN NaN NaN NaN 166.45 1 161.66 161.16 162.16 -4.7898 0 0 0 0.22501 1 33442 33442 12.241 4.0851 1 + 12658 18539 8060 8063 12887 12887 0.13065457582365525 ELSMEYEQCK 10 Unmodified _ELSMEYEQCK_ 0 0 0 REV__ENST00000492097.5_1_3:141882642-141900319:-|nuORF REV__ENST00000492097.5_1_3:141882642-141900319:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7521362304688 2 630.267764 1258.52097 NaN NaN NaN NaN NaN NaN NaN 78.719 1 75.256 74.756 75.756 -3.4633 0 0 0 0.22588 1 15371 15371 6.7232 0.99131 1 + 12659 18449 8061 8064 12888 12888 -0.09794513167753394 ELSNNILD 8 Unmodified _ELSNNILD_ 0 0 0 ENSG00000165487|ENST00000382374|MICU2;ENST00000479790.2_1_13:22067390-22069479:-|nuORF ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.235107421875 2 459.232364 916.450176 0.40244 0.00018482 -0.23783 -0.00010922 0.16462 7.5597E-05 459.23219206926973 75.347 0.86437 75.347 74.885 75.75 0 69 24 4 0 0 0 0.40222 1 14622 14622 32.305 1.6689 1 22446000 12660 5631 8062 8065 12889 12889 -0.011391020987502998 ELSNVQEDSQP 11 Unmodified _ELSNVQEDSQP_ 0 0 0 ENSG00000090339|ENST00000264832|ICAM1 ENSG00000090339|ENST00000264832|ICAM1 ENSG00000090339|ENST00000264832|ICAM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7688598632812 2 623.283314 1244.55207 1.1922 0.00074308 -4.3752 -0.002727 -3.183 -0.0019839 623.7807463239049 167.15 0.202 162.36 162.25 162.46 -4.7898 6 5 2 0 0 0 0.88709 1 33650 33650 8.7454 0 1 29847000 12661 1781 8063 8066 12890 12890 -0.06041900537661604 ELSNYLSM 8 Unmodified _ELSNYLSM_ 0 0 0 REV__nc|ENSG00000159873|Q8IWD4-2|CCDC117 REV__nc|ENSG00000159873|Q8IWD4-2|CCDC117 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72314453125 2 478.723318 955.432083 -0.2885 -0.00013811 0.75149 0.00035976 0.46299 0.00022164 478.72334677405337 57.18 0.65798 57.18 56.85 57.508 0 32 18 2 0 0 0 0.21714 1 10934 10934 43.858 0.085901 1 2518400 + 12662 17384 8064 8067 12891 12891 -0.04741560345109974 ELSNYLSM 8 Unmodified _ELSNYLSM_ 0 0 0 REV__nc|ENSG00000159873|Q8IWD4-2|CCDC117 REV__nc|ENSG00000159873|Q8IWD4-2|CCDC117 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.723388671875 2 478.723318 955.432083 0.086009 4.1174E-05 0.30433 0.00014569 0.39034 0.00018686 478.72326696223064 60.431 0.66622 57.117 56.764 57.431 -3.3139 30 18 2 0 0 0 0.40222 1 11204 11204 32.305 3.8186 1 1977000 + 12663 17384 8064 8067 12892 12892 -0.04741560345109974 ELSQPPPPP 9 Unmodified _ELSQPPPPP_ 0 0 0 REV__ENSG00000151612|ENST00000508784|ZNF827 REV__ENSG00000151612|ENST00000508784|ZNF827 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2360534667969 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 30.547 1 28.43 27.93 28.93 -2.1167 0 0 0 0.23411 1 5521 5521 13.508 0 1 + 12664 17074 8065 8068 12893 12893 0.00982078660570096 ELSRKDWPG 9 Unmodified _ELSRKDWPG_ 0 0 0 REV__ANK3|p.K2850Rfs*29|1|0.08|ENSG00000151150|chr10:60072332-60072332|T/-|frameshift_variant REV__ANK3|p.K2850Rfs*29|1|0.08|ENSG00000151150|chr10:60072332-60072332|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.18023681640625 3 363.189212 1086.54581 0.1079 3.9188E-05 0.081949 2.9763E-05 0.18985 6.8951E-05 363.18921111716617 61.434 0.87659 58.065 57.691 58.568 -3.3694 76 24 4 0 0 0 0.87888 1 11542 11542 1.0715 0.10919 1 30077000 + 12665 13047 8066 8069 12894 12894 0.005996708121301708 ELSRSRKLY 9 Unmodified _ELSRSRKLY_ 0 0 0 FCHSD1|p.L285Afs*23|1|0.45|ENSG00000197948|chr5:141647207-141647208|-/T|frameshift_variant;nc|ENSG00000197948|Q86WN1-3|FCHSD1;FCHSD1|p.P611Qfs*52|1|0.24|ENSG00000197948|chr5:141644249-141644249|G/-|frameshift_variant;FCHSD1|p.S627Ffs*53|1|0.2|ENSG00000197948|chr5:141643074-141643075|-/G|frameshift_variant;ENSG00000197948|ENST00000435817|FCHSD1 FCHSD1|p.L285Afs*23|1|0.45|ENSG00000197948|chr5:141647207-141647208|-/T|frameshift_variant FCHSD1|p.L285Afs*23|1|0.45|ENSG00000197948|chr5:141647207-141647208|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3321533203125 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 33.884 1 31.567 31.067 32.067 -2.3175 0 0 0 0.23508 1 6208 6208 7.2892 2.5332 1 12666 7414 8067 8070 12895 12895 0.0765590814596635 ELSSVQQQY 9 Unmodified _ELSSVQQQY_ 0 0 0 REV__ENST00000510625.1_1_3:134255984-134293730:+|nuORF REV__ENST00000510625.1_1_3:134255984-134293730:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2633056640625 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 112.68 1 108.16 107.66 108.66 -4.5259 0 0 0 0.22251 1 21630 21630 16.942 2.104 1 + 12667 22540 8068 8071 12896 12896 -0.028280455242793323 ELSTKGMVP 9 Unmodified _ELSTKGMVP_ 0 0 0 nc|ENSG00000239306|Q96PK6-2|RBM14 nc|ENSG00000239306|Q96PK6-2|RBM14 nc|ENSG00000239306|Q96PK6-2|RBM14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2544860839844 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 102.68 1 98.494 97.994 98.994 -4.1861 0 0 0 0.14843 1 20184 20184 30.637 5.2372 1 12668 12616 8069 8072 12897 12897 0.013190054429401243 ELTALQKFH 9 Unmodified _ELTALQKFH_ 0 0 0 REV__nc|ENSG00000158966|Q5VU97-2|CACHD1 REV__nc|ENSG00000158966|Q5VU97-2|CACHD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7879638671875 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 117.57 1 112.96 112.46 113.46 -4.6106 0 0 0 0.23508 1 22563 22563 10.824 0.024421 1 + 12669 13231 8070 8073 12898 12898 0.04757431851635374 ELTAPFSHSV 10 Unmodified _ELTAPFSHSV_ 0 0 0 REV__ENSG00000196611|ENST00000315274|MMP1 REV__ENSG00000196611|ENST00000315274|MMP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7789916992188 2 544.274564 1086.53457 0.46009 0.00025042 -0.23427 -0.00012751 0.22582 0.00012291 544.2748906318961 98.193 1.0695 98.193 97.507 98.576 0 38 19 3 0 0 0 0.61964 1 19300 19300 18.146 1.2041 1 3786900 + 12670 19264 8071 8074 12899 12899 -0.005231512819818818 ELTAPFSHSV 10 Unmodified _ELTAPFSHSV_ 0 0 0 REV__ENSG00000196611|ENST00000315274|MMP1 REV__ENSG00000196611|ENST00000315274|MMP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7791748046875 2 544.274564 1086.53457 0.20706 0.0001127 0.27672 0.00015061 0.48378 0.00026331 544.2748656090779 102.27 1.3621 98.089 97.479 98.841 -4.1861 36 23 2 0 0 0 0.32088 1 20130 20130 36.127 8.4982 1 5056900 + 12671 19264 8071 8074 12900 12900 -0.005231512819818818 ELTEAPGQA 9 Unmodified _ELTEAPGQA_ 0 0 0 REV__ENSG00000015532|ENST00000017003|XYLT2 REV__ENSG00000015532|ENST00000017003|XYLT2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2385559082031 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 76.095 1 76.095 75.595 76.595 0 0 0 0 0.10202 1 14787 14787 37.974 5.857 1 + 12672 13962 8072 8075 12901 12901 -0.0261138861579866 ELTEAPGQA 9 Unmodified _ELTEAPGQA_ 0 0 0 REV__ENSG00000015532|ENST00000017003|XYLT2 REV__ENSG00000015532|ENST00000017003|XYLT2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2239074707031 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 79.491 1 75.98 75.48 76.48 -3.5102 0 0 0 0.11195 1 15522 15522 36.127 4.0101 1 + 12673 13962 8072 8075 12902 12902 -0.0261138861579866 ELTEAPGQA 9 Unmodified _ELTEAPGQA_ 0 0 0 REV__ENSG00000015532|ENST00000017003|XYLT2 REV__ENSG00000015532|ENST00000017003|XYLT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2229919433594 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 83.561 1 79.687 79.187 80.187 -3.8736 0 0 0 0.091359 1 15870 15870 39.957 7.8404 1 + 12674 13962 8072 8075 12903 12903 -0.0261138861579866 ELTFIDGRK 9 Unmodified _ELTFIDGRK_ 0 0 0 REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 102.34 1 98.32 97.82 98.82 -4.0212 0 0 0 0.23508 1 19666 19666 2.7352 0.23671 1 + 12675 15896 8073 8076 12904 12904 0.046171279889904326 ELTGVFLVKH 10 Unmodified _ELTGVFLVKH_ 0 0 0 ENSG00000108381|ENST00000263080|ASPA ENSG00000108381|ENST00000263080|ASPA ENSG00000108381|ENST00000263080|ASPA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 571.829833984375 2 571.832049 1141.64954 NaN NaN NaN NaN NaN NaN NaN 173.01 1 173.01 172.51 173.51 0 0 0 0 0.22576 1 35750 35750 14.838 1.7958 1 12676 2469 8074 8077 12905 12905 0.08438577919810086 ELTHPLGSPIS 11 Unmodified _ELTHPLGSPIS_ 0 0 0 REV__ENSG00000126500|ENST00000682287|FLRT1 REV__ENSG00000126500|ENST00000682287|FLRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32275390625 2 575.808771 1149.60299 -0.35941 -0.00020695 0.15007 8.641E-05 -0.20934 -0.00012054 575.808864919045 106.27 0.48352 102.01 101.87 102.35 -4.2638 17 13 2 0 0 0 0.43921 1 20966 20966 26.268 5.8145 1 1029600 + 12677 15858 8075 8078 12906 12906 0.034170932978668134 ELTIIILIP 9 Unmodified _ELTIIILIP_ 0 0 0 REV__TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant REV__TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.01727294921875 3 342.226604 1023.65798 NaN NaN NaN NaN NaN NaN NaN 139.5 1 134.86 134.36 135.36 -4.6439 0 0 0 0.23508 1 27541 27541 1.0715 0 1 + 12678 14389 8076 8079 12907 12907 0.14710131836443452 ELTIIILIP 9 Unmodified _ELTIIILIP_ 0 0 0 REV__TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant REV__TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.4559631347656 3 342.226604 1023.65798 NaN NaN NaN NaN NaN NaN NaN 75.746 1 72.112 71.612 72.612 -3.6337 0 0 0 0.23508 1 14404 14404 1.0715 0 1 + 12679 14389 8076 8079 12908 12908 0.14710131836443452 ELTIIILIP 9 Unmodified _ELTIIILIP_ 0 0 0 REV__TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant REV__TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.2393493652344 3 342.226604 1023.65798 NaN NaN NaN NaN NaN NaN NaN 102.78 1 98.756 98.256 99.256 -4.0212 0 0 0 0.23508 1 19757 19757 1.0715 0 1 + 12680 14389 8076 8079 12909 12909 0.14710131836443452 ELTKIYRRKRK 11 Unmodified _ELTKIYRRKRK_ 0 0 0 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 497.9537048339844 3 497.647448 1489.92051 NaN NaN NaN NaN NaN NaN NaN 163.99 1 163.99 163.49 164.49 0 0 0 0 0.22632 1 33109 33109 0.03141 0 1 12681 6 8077 8080 12910 12910 0.1951514562488228 ELTKVCVICS 10 Unmodified _ELTKVCVICS_ 0 0 0 REV__ENST00000491322.1_1_1:182354591-182354669:-|nuORF REV__ENST00000491322.1_1_1:182354591-182354669:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7838745117188 2 547.782853 1093.55115 NaN NaN NaN NaN NaN NaN NaN 59.963 1 59.963 59.463 60.463 0 0 0 0 0.19577 1 11493 11493 29.082 6.3453 1 + 12682 22318 8078 8081 12911 12911 0.008118902880823953 ELTLIDDKP 9 Unmodified _ELTLIDDKP_ 0 0 0 GPR15|p.F205Lfs*5|1|0.44|ENSG00000154165|chr3:98532643-98532643|T/-|frameshift_variant;ENSG00000154165|ENST00000284311|GPR15 GPR15|p.F205Lfs*5|1|0.44|ENSG00000154165|chr3:98532643-98532643|T/-|frameshift_variant GPR15|p.F205Lfs*5|1|0.44|ENSG00000154165|chr3:98532643-98532643|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2774047851562 2 522.284597 1042.55464 NaN NaN NaN NaN NaN NaN NaN 141.65 1 136.66 136.16 137.16 -4.9877 0 0 0 0.19638 1 27281 27281 4.897 3.2051 1 12683 4998 8079 8082 12912 12912 0.03506599657953302 ELTPERHTV 9 Unmodified _ELTPERHTV_ 0 0 0 ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant;CMYA5|p.I3735Hfs*2|1|0.08|ENSG00000164309|chr5:79758842-79758843|-/T|frameshift_variant ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2824096679688 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 70.394 1 70.394 69.894 70.894 0 0 0 0 0.1761 1 13636 13636 26.884 5.137 1 12684 5532 8080 8083 12913 12913 0.019316534665676954 ELTPERHTV 9 Unmodified _ELTPERHTV_ 0 0 0 ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant;CMYA5|p.I3735Hfs*2|1|0.08|ENSG00000164309|chr5:79758842-79758843|-/T|frameshift_variant ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.282958984375 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 70.643 1 70.643 70.143 71.143 0 0 0 0 0.16428 1 13682 13682 28.487 6.7402 1 12685 5532 8080 8083 12914 12914 0.019316534665676954 ELTQFRSY 8 Unmodified _ELTQFRSY_ 0 0 0 REV__nc|ENSG00000175879|P13378-3|HOXD8 REV__nc|ENSG00000175879|P13378-3|HOXD8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2604370117188 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 141.54 1 136.67 136.17 137.17 -4.8678 0 0 0 0.21486 1 27314 27314 9.3474 0 1 + 12686 18491 8081 8084 12915 12915 -0.011194204534604069 ELTQQQYH 8 Unmodified _ELTQQQYH_ 0 0 0 REV__ENST00000577218.1_1_17:27696748-27696895:-|nuORF REV__ENST00000577218.1_1_17:27696748-27696895:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6796264648438 2 523.748713 1045.48287 -0.013667 -7.1579E-06 -1.4542 -0.00076165 -1.4679 -0.0007688 524.2491527367041 83.633 0.41847 79.934 79.656 80.074 -3.6985 16 11 2 0 0 0 0.98792 1 15995 15995 9.3474 1.4373 1 1368900 + 12687 23214 8082 8085 12916 12916 -0.038048949759058814 ELTRPYRRRYL 11 Unmodified _ELTRPYRRRYL_ 0 0 0 REV__PIAS2|p.N150Ifs*17|1|0.07|ENSG00000078043|chr18:46890630-46890630|T/-|frameshift_variant REV__PIAS2|p.N150Ifs*17|1|0.07|ENSG00000078043|chr18:46890630-46890630|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 761.9327392578125 2 761.933691 1521.85283 NaN NaN NaN NaN NaN NaN NaN 171.71 1 171.71 171.21 172.21 0 0 0 0 0.23379 1 35396 35396 5.2969 3.6443 1 + 12688 14373 8083 8086 12917 12917 0.11277695694116119 ELTTKGRVPYP 11 Unmodified _ELTTKGRVPYP_ 0 0 0 nc|ENSG00000197122|P12931-3|SRC;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;ENST00000493775.1_1_20:36030831-36031351:+|nuORF nc|ENSG00000197122|P12931-3|SRC nc|ENSG00000197122|P12931-3|SRC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7504272460938 2 630.85097 1259.68739 NaN NaN NaN NaN NaN NaN NaN 173.19 1 168.31 167.81 168.81 -4.881 0 0 0 0.20577 1 34417 34417 17.443 1.2935 1 12689 12539 8084 8087 12918 12918 0.06793044114624536 ELTVLDEP 8 Unmodified _ELTVLDEP_ 0 0 0 nc|ENSG00000179057|Q8N9C0|IGSF22;ENSG00000179057|ENST00000513874|IGSF22 nc|ENSG00000179057|Q8N9C0|IGSF22 nc|ENSG00000179057|Q8N9C0|IGSF22 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2389831542969 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 83.537 1 79.839 79.339 80.339 -3.6985 0 0 0 0.14536 1 15948 15948 38.151 6.0342 1 12690 6606 8085 8088 12919 12919 -0.0009733381324394941 ELTVWDQA 8 Unmodified _ELTVWDQA_ 0 0 0 nc|ENSG00000164674|Q4VX76-2|SYTL3;ENSG00000164674|ENST00000611299|SYTL3 nc|ENSG00000164674|Q4VX76-2|SYTL3 nc|ENSG00000164674|Q4VX76-2|SYTL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2342834472656 2 481.234907 960.455261 -0.31506 -0.00015162 -0.18315 -8.8136E-05 -0.49821 -0.00023975 481.2349099236572 62.798 1.1825 62.798 61.939 63.121 0 56 33 3 0 0 0 0.58432 1 12079 12079 23.148 0 1 3142000 12691 5560 8086 8089 12920 12920 -0.02654798236142142 ELVAKFLPESA 11 Unmodified _ELVAKFLPESA_ 0 0 0 REV__ENST00000575500.5_2_17:78163648-78178987:+|nuORF REV__ENST00000575500.5_2_17:78163648-78178987:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2920532226562 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 173.86 1 169.07 168.57 169.57 -4.7898 0 0 0 0.22595 1 35490 35490 11.495 2.1116 1 + 12692 16637 8087 8090 12921 12921 0.06146836991774762 ELVDEHEDFK 10 Unmodified _ELVDEHEDFK_ 0 0 0 REV__SERTAD2|p.G16V|1|0.68|ENSG00000179833|chr2:64636825-64636825|C/A|missense_variant REV__SERTAD2|p.G16V|1|0.68|ENSG00000179833|chr2:64636825-64636825|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7714233398438 2 630.790775 1259.567 NaN NaN NaN NaN NaN NaN NaN 170.58 1 170.58 170.08 171.08 0 0 0 0 0.22576 1 35081 35081 14.838 2.5976 1 + 12693 24604 8088 8091 12922 12922 -0.05240408669669705 ELVDEYAQLY 10 Unmodified _ELVDEYAQLY_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7643432617188 2 621.798069 1241.58158 0.16907 0.00010513 0.96674 0.00060112 1.1358 0.00070624 621.7995944591157 93.243 0.16638 93.243 93.092 93.259 0 6 4 2 0 0 0 0.67319 1 18225 18225 13.906 3.8321 1 1243400 + 12694 24099 8089 8092 12923 12923 -0.029543365214976802 ELVDEYAQLY 10 Unmodified _ELVDEYAQLY_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 621.798069 1241.58158 0.16907 0.00010513 0.96674 0.00060112 1.1358 0.00070624 621.7995944591157 93.243 0.16638 93.243 93.092 93.259 0 0 0 NaN 13.906 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1243400 + 12695 24099 8089 8092 -0.029543365214976802 ELVDFNCRSHY 11 Unmodified _ELVDFNCRSHY_ 0 0 0 REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5426940917969 3 461.543438 1381.60848 NaN NaN NaN NaN NaN NaN NaN 151.34 1 146.1 145.6 146.6 -5.2365 0 0 0 0.23698 1 29333 29333 2.6312 0 1 + 12696 13614 8090 8093 12924 12924 -0.06705551181971714 ELVFLFLY 8 Unmodified _ELVFLFLY_ 0 0 0 ENST00000260356.5_1_15:39889395-39889446:+|nuORF ENST00000260356.5_1_15:39889395-39889446:+|nuORF ENST00000260356.5_1_15:39889395-39889446:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2715454101562 2 522.294236 1042.57392 NaN NaN NaN NaN NaN NaN NaN 156.81 1 151.53 151.03 152.03 -5.2854 0 0 0 0.21486 1 30425 30425 6.3541 1.5981 1 12697 8280 8091 8094 12925 12925 0.05433600739524991 ELVGQLQRLGF 11 Unmodified _ELVGQLQRLGF_ 0 0 0 nc|ENSG00000107902|Q9H008-2|LHPP;ENSG00000107902|ENST00000368842|LHPP nc|ENSG00000107902|Q9H008-2|LHPP nc|ENSG00000107902|Q9H008-2|LHPP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.759033203125 2 630.358962 1258.70337 NaN NaN NaN NaN NaN NaN NaN 84.782 1 80.873 80.373 81.373 -3.9093 0 0 0 0.23379 1 16118 16118 5.2969 0.96765 1 12698 2448 8092 8095 12926 12926 0.08436750351484079 ELVKINHEGL 10 Unmodified _ELVKINHEGL_ 0 0 0 REV__nc|ENSG00000010438|P35030-5|PRSS3 REV__nc|ENSG00000010438|P35030-5|PRSS3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3234252929688 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 174.83 1 169.94 169.44 170.44 -4.8916 0 0 0 0.22588 1 34820 34820 8.7454 3.0136 1 + 12699 13923 8093 8096 12927 12927 0.06533086051808823 ELVMLMQLS 9 Unmodified _ELVMLMQLS_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.283203125 2 532.279946 1062.54534 0.75524 0.000402 0.097518 5.1907E-05 0.85276 0.0004539 532.2799772111629 70.314 0.39396 66.734 66.517 66.911 -3.5798 21 10 3 0 0 0 0.42844 1 13257 13257 24.021 1.2843 1 1311700 + 12700 16781 8094 8097 12928 12928 0.016567917764405138 ELVMLMQLS 9 Unmodified _ELVMLMQLS_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.279946 1062.54534 -0.24226 -0.00012895 0.9175 0.00048837 0.67524 0.00035942 532.2803356940183 66.763 0.45981 66.763 66.59 67.049 0 0.0087503 0.00061537 NaN 24.021 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1209900 + 12701 16781 8094 8097 0.016567917764405138 ELVMLMQLS 9 Unmodified _ELVMLMQLS_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.279946 1062.54534 -0.042685 -2.272E-05 0.46815 0.00024918 0.42546 0.00022646 532.2800939488855 69.963 0.52464 66.783 66.476 67 -3.1796 0.028725 0.00013701 NaN 24.021 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1803100 + 12702 16781 8094 8097 0.016567917764405138 ELVMLMQLS 9 Unmodified _ELVMLMQLS_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.279946 1062.54534 0.75524 0.000402 0.097518 5.1907E-05 0.85276 0.0004539 532.2799772111629 70.314 0.39396 66.734 66.517 66.911 -3.5798 -0.020063 -0.00025755 NaN 24.021 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1311700 + 12703 16781 8094 8097 0.016567917764405138 ELVMLMQLS 9 Unmodified _ELVMLMQLS_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.279946 1062.54534 0.39652 0.00021106 -0.14268 -7.5944E-05 0.25385 0.00013512 532.2798149850273 70.204 0.41986 66.737 66.499 66.919 -3.467 -0.017412 -0.00051325 NaN 24.021 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1224300 + 12704 16781 8094 8097 0.016567917764405138 ELVNEYKCDF 10 Unmodified _ELVNEYKCDF_ 0 0 0 ENSG00000166845|ENST00000620105|C18orf54 ENSG00000166845|ENST00000620105|C18orf54 ENSG00000166845|ENST00000620105|C18orf54 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7771606445312 2 630.284271 1258.55399 0.42916 0.00027049 2.5639 0.001616 2.993 0.0018865 630.7859121636621 172.02 0.13953 167.12 167.05 167.19 -4.8977 5 3 2 0 0 0 0.71778 1 34086 34086 9.3831 1.2276 1 6285100 12705 5753 8095 8098 12929 12929 -0.06494563053411184 ELWEESGL 8 Unmodified _ELWEESGL_ 0 0 0 ENSG00000186364|ENST00000334513|NUDT17 ENSG00000186364|ENST00000334513|NUDT17 ENSG00000186364|ENST00000334513|NUDT17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2364807128906 2 481.726915 961.439277 0.011891 5.7284E-06 -0.027004 -1.3008E-05 -0.015112 -7.2801E-06 481.72683159662233 97.067 0.80579 97.067 96.632 97.437 0 34 22 2 0 0 0 0.67678 1 18938 18938 19.439 2.4967 1 2110100 12706 7053 8096 8099 12930 12930 -0.04298504473035791 ELWETCHMPD 10 Unmodified _ELWETCHMPD_ 0 0 0 ENSG00000189253|ENST00000329862|TRIM64B ENSG00000189253|ENST00000329862|TRIM64B ENSG00000189253|ENST00000329862|TRIM64B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.763427734375 2 630.754824 1259.49509 NaN NaN NaN NaN NaN NaN NaN 173.9 1 173.9 173.4 174.4 0 0 0 0 0.22588 1 35981 35981 6.2058 1.4498 1 12707 7222 8097 8100 12931 12931 -0.1242736261938262 ELWETCHMPD 10 Unmodified _ELWETCHMPD_ 0 0 0 ENSG00000189253|ENST00000329862|TRIM64B ENSG00000189253|ENST00000329862|TRIM64B ENSG00000189253|ENST00000329862|TRIM64B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7742309570312 2 630.754824 1259.49509 NaN NaN NaN NaN NaN NaN NaN 172.2 1 167.32 166.82 167.82 -4.881 0 0 0 0.22588 1 34167 34167 6.7232 0.99131 1 12708 7222 8097 8100 12932 12932 -0.1242736261938262 ELWKDRAY 8 Unmodified _ELWKDRAY_ 0 0 0 REV__nc|ENSG00000126457|Q99873-5|PRMT1 REV__nc|ENSG00000126457|Q99873-5|PRMT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2777099609375 2 540.777274 1079.53999 0.72633 0.00039278 0.55166 0.00029832 1.278 0.00069111 540.7771481640634 109.88 1.4389 105.7 104.87 106.31 -4.1826 95 40 3 0 0 0 8448 1 21013 21013 13.615 6.1378 1 5333300 + 12709 24028 8098 8101 12933 12933 0.003405723004561878 ELWLLPRPA 9 Unmodified _ELWLLPRPA_ 0 0 0 REV__ENST00000320631.7_1_11:64621426-64621564:-|nuORF REV__ENST00000320631.7_1_11:64621426-64621564:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7684936523438 2 547.821484 1093.62842 0.21883 0.00011988 2.0525 0.0011244 2.2714 0.0012443 548.321668706788 166.03 0.13976 161.05 160.98 161.12 -4.9811 6 3 2 0 0 0 0.79204 1 32514 32514 11.64 0 1 5713200 + 12710 20546 8099 8102 12934 12934 0.08534612610947079 ELWMMVDY 8 Unmodified _ELWMMVDY_ 0 0 0 nc|ENSG00000204084|P32019-3|INPP5B;INPP5B|p.L938Cfs*5|1|0.45|ENSG00000204084|chr1:37864365-37864365|A/-|frameshift_variant;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B nc|ENSG00000204084|P32019-3|INPP5B nc|ENSG00000204084|P32019-3|INPP5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7859497070312 2 543.735371 1085.45619 NaN NaN NaN NaN NaN NaN NaN 131.84 1 131.84 131.34 132.34 0 0 0 0 0.2343 1 26058 26058 0.62683 0.21856 1 12711 7557 8100 8103 12935 12935 -0.08312043183104834 ELWMMVDY 8 Unmodified _ELWMMVDY_ 0 0 0 nc|ENSG00000204084|P32019-3|INPP5B;INPP5B|p.L938Cfs*5|1|0.45|ENSG00000204084|chr1:37864365-37864365|A/-|frameshift_variant;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B nc|ENSG00000204084|P32019-3|INPP5B nc|ENSG00000204084|P32019-3|INPP5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.791748046875 2 543.735371 1085.45619 NaN NaN NaN NaN NaN NaN NaN 150.33 1 150.33 149.83 150.83 0 0 0 0 0.21486 1 30096 30096 5.7604 0.52976 1 12712 7557 8100 8103 12936 12936 -0.08312043183104834 ELWQEYDEEED 11 Unmodified _ELWQEYDEEED_ 0 0 0 REV__ENST00000606725.5_1_19:19414686-19431305:-|nuORF REV__ENST00000606725.5_1_19:19414686-19431305:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3837890625 2 742.788626 1483.5627 NaN NaN NaN NaN NaN NaN NaN 165.11 1 160.32 159.82 160.82 -4.7898 0 0 0 0.22632 1 33044 33044 0 0 1 + 12713 15012 8101 8104 12937 12937 -0.1597396267388831 ELWVIFNRFET 11 Unmodified _ELWVIFNRFET_ 0 0 0 REV__ENSG00000087302|ENST00000261700|RTRAF REV__ENSG00000087302|ENST00000261700|RTRAF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 727.4284057617188 2 727.377352 1452.74015 NaN NaN NaN NaN NaN NaN NaN 168.21 1 168.21 167.71 168.71 0 0 0 0 0.22632 1 34430 34430 0.172 0 1 + 12714 14501 8102 8105 12938 12938 0.03189002177396105 ELWWSVPG 8 Unmodified _ELWWSVPG_ 0 0 0 REV__ENST00000525981.1_1_11:8707303-8707378:+|nuORF REV__ENST00000525981.1_1_11:8707303-8707378:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.1697998046875 3 325.164116 972.470518 NaN NaN NaN NaN NaN NaN NaN 92.418 1 88.493 87.993 88.993 -3.9251 0 0 0 0.21486 1 18100 18100 1.6526 0 1 + 12715 22686 8103 8106 12939 12939 -0.01681886648282216 ELYCTFTYL 9 Unmodified _ELYCTFTYL_ 0 0 0 REV__ENST00000338910.8_1_13:20277187-20277373:-|nuORF REV__ENST00000338910.8_1_13:20277187-20277373:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.314208984375 2 576.767726 1151.5209 NaN NaN NaN NaN NaN NaN NaN 102.55 1 98.524 98.024 99.024 -4.0212 0 0 0 0.15147 1 19710 19710 30.225 0 1 + 12716 20688 8104 8107 12940 12940 -0.04880145105448719 ELYEIHKEFY 10 Unmodified _ELYEIHKEFY_ 0 0 0 nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR nc|ENSG00000186716|P11274-2|BCR nc|ENSG00000186716|P11274-2|BCR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23162841796875 3 457.559082 1369.65542 0.36373 0.00016643 -0.89063 -0.00040752 -0.52691 -0.00024109 457.55878959235685 34.23 0.3446 32.015 31.777 32.122 -2.2158 26 9 3 0 0 0 0.75679 1 5966 5966 3.5871 1.1523 1 1165400 12717 7077 8105 8108 12941 12941 -0.014623683591935333 ELYGKKNLN 9 Unmodified _ELYGKKNLN_ 0 0 0 REV__tr|U7STY6|U7STY6_FUSNURNApolymerasesigmafactor54core-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01233PE=4SV=1 REV__tr|U7STY6|U7STY6_FUSNURNApolymerasesigmafactor54core-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01233PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 152.19 1 146.95 146.45 147.45 -5.2365 0 0 0 0.23508 1 29503 29503 2.7352 0 1 + 12718 25131 8106 8109 12942 12942 0.0461712798901317 ELYGKKNLN 9 Unmodified _ELYGKKNLN_ 0 0 0 REV__tr|U7STY6|U7STY6_FUSNURNApolymerasesigmafactor54core-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01233PE=4SV=1 REV__tr|U7STY6|U7STY6_FUSNURNApolymerasesigmafactor54core-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01233PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 153.51 1 148.28 147.78 148.78 -5.2209 0 0 0 0.23508 1 29753 29753 2.7352 0 1 + 12719 25131 8106 8109 12943 12943 0.0461712798901317 ELYIHNLSY 9 Unmodified _ELYIHNLSY_ 0 0 0 REV__ENST00000482016.5_1_3:88105110-88106361:-|nuORF REV__ENST00000482016.5_1_3:88105110-88106361:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3360595703125 2 576.290214 1150.56587 0.011824 6.8143E-06 -2.2862 -0.0013175 -2.2743 -0.0013107 576.2891093829099 77.833 0.7784 74.37 73.97 74.748 -3.4633 46 19 3 0 0 0 0.54076 1 15218 15218 20.454 0 1 5430200 + 12720 22185 8107 8110 12944 12944 -0.0033857824791994062 ELYMRRRK 8 Unmodified _ELYMRRRK_ 0 0 0 ENSG00000092820|ENST00000367075|EZR;MSN|p.P297Afs*2|1|0.34|ENSG00000147065|chrX:65735356-65735357|-/A|frameshift_variant;ENST00000511640.1_1_5:25909808-25910855:+|nuORF;nc|ENSG00000137710|P35241-4|RDX;ENSG00000147065|ENST00000360270|MSN;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-5|RDX ENSG00000092820|ENST00000367075|EZR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3280029296875 2 576.326942 1150.63933 NaN NaN NaN NaN NaN NaN NaN 110.33 1 105.95 105.45 106.45 -4.3776 0 0 0 0.2343 1 21746 21746 0.063987 0 1 12721 1839;12348 8108 8111 12945 12945 0.07003691713589433 ELYPRWHRKRK 11 Unmodified _ELYPRWHRKRK_ 0 0 0 REV__ENSG00000168517|ENST00000589230|HEXIM2 REV__ENSG00000168517|ENST00000589230|HEXIM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6801147460938 3 523.635542 1567.8848 NaN NaN NaN NaN NaN NaN NaN 96.31 1 92.261 91.761 92.761 -4.0496 0 0 0 0.23698 1 18884 18884 1.1098 0 1 + 12722 18034 8109 8112 12946 12946 0.1235710816788469 ELYQRWERYRR 11 Unmodified _ELYQRWERYRR_ 0 0 0 nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR nc|ENSG00000010310|P48546-2|GIPR nc|ENSG00000010310|P48546-2|GIPR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 552.4323120117188 3 552.290212 1653.84881 0.21609 0.00011935 1.8031 0.00099584 2.0192 0.0011152 552.2896440790167 164.24 0.10266 159.2 159.14 159.24 -5.0446 4 2 2 0 0 0 0.89134 1 32016 32016 0.094841 0.068635 1 6143600 12723 1062 8110 8113 12947 12947 0.0480360620040301 ELYYFYKRFD 10 Unmodified _ELYYFYKRFD_ 0 0 0 REV__SCN9A|p.T1946Nfs*14|1|0.31|ENSG00000169432|chr2:166198802-166198803|-/T|frameshift_variant REV__SCN9A|p.T1946Nfs*14|1|0.31|ENSG00000169432|chr2:166198802-166198803|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7655334472656 3 481.902961 1442.68705 NaN NaN NaN NaN NaN NaN NaN 72.676 1 69.138 68.638 69.638 -3.5385 0 0 0 0.22588 1 13780 13780 3.5871 0.74377 1 + 12724 18103 8111 8114 12948 12948 -0.01658375605279616 EMATEIAGP 9 Unmodified _EMATEIAGP_ 0 0 0 REV__ENST00000460613.5_1_3:188925173-188937392:+|nuORF REV__ENST00000460613.5_1_3:188925173-188937392:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24810791015625 2 459.715493 917.416433 0.44973 0.00020675 1.3144 0.00060424 1.7641 0.00081099 459.7161022089242 49.75 1.0355 49.75 49.336 50.371 0 47 29 3 0 0 0 0.44262 1 9397 9397 23.148 1.4018 1 2767500 + 12725 19125 8112 8115 12949 12949 -0.04557846862155657 EMATEIAGP 9 Unmodified _EMATEIAGP_ 0 0 0 REV__ENST00000460613.5_1_3:188925173-188937392:+|nuORF REV__ENST00000460613.5_1_3:188925173-188937392:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.231689453125 2 459.715493 917.416433 0.0013577 6.2417E-07 2.2006 0.0010116 2.2019 0.0010123 459.71671461283717 52.865 0.87932 49.778 49.405 50.284 -3.0876 40 24 2 0 0 0 0.32428 3 9756 9731;9751;9756 30.225 8.4782 1 3520300 + 12726 19125 8112 8115 12950;12951;12952 12952 -0.04557846862155657 EMCDWLTEVWE 11 Unmodified _EMCDWLTEVWE_ 0 0 0 REV__SCN7A|p.D959Lfs*11|1|0.11|ENSG00000136546|chr2:166423411-166423412|-/AA|frameshift_variant REV__SCN7A|p.D959Lfs*11|1|0.11|ENSG00000136546|chr2:166423411-166423412|-/AA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24505615234375 3 480.865189 1439.57374 NaN NaN NaN NaN NaN NaN NaN 20.248 1 18.864 18.364 19.364 -1.3847 0 0 0 0.22632 1 3133 3133 0.026206 0 1 + 12727 16340 8113 8116 12953 12953 -0.12846555104943036 EMCDWLTEVWE 11 Unmodified _EMCDWLTEVWE_ 0 0 0 REV__SCN7A|p.D959Lfs*11|1|0.11|ENSG00000136546|chr2:166423411-166423412|-/AA|frameshift_variant REV__SCN7A|p.D959Lfs*11|1|0.11|ENSG00000136546|chr2:166423411-166423412|-/AA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2433166503906 3 480.865189 1439.57374 NaN NaN NaN NaN NaN NaN NaN 18.464 1 16.949 16.449 17.449 -1.5148 0 0 0 0.22632 1 2737 2737 0.026206 0 1 + 12728 16340 8113 8116 12954 12954 -0.12846555104943036 EMCDWLTEVWE 11 Unmodified _EMCDWLTEVWE_ 0 0 0 REV__SCN7A|p.D959Lfs*11|1|0.11|ENSG00000136546|chr2:166423411-166423412|-/AA|frameshift_variant REV__SCN7A|p.D959Lfs*11|1|0.11|ENSG00000136546|chr2:166423411-166423412|-/AA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23773193359375 3 480.865189 1439.57374 NaN NaN NaN NaN NaN NaN NaN 22.098 1 20.377 19.877 20.877 -1.7211 0 0 0 0.22632 1 3493 3493 0.172 0 1 + 12729 16340 8113 8116 12955 12955 -0.12846555104943036 EMCNLYIMY 9 Unmodified _EMCNLYIMY_ 0 0 0 PAM|p.D434Gfs*6|1|0.33|ENSG00000145730|chr5:102974244-102974245|-/A|frameshift_variant;nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;PAM|p.K891Nfs*31|1|0.38|ENSG00000145730|chr5:103025313-103025313|A/-|frameshift_variant;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM PAM|p.D434Gfs*6|1|0.33|ENSG00000145730|chr5:102974244-102974245|-/A|frameshift_variant PAM|p.D434Gfs*6|1|0.33|ENSG00000145730|chr5:102974244-102974245|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2672119140625 2 590.247788 1178.48102 NaN NaN NaN NaN NaN NaN NaN 108.55 1 104.23 103.73 104.73 -4.32 0 0 0 0.19711 1 21391 21391 0.37959 0.31572 1 12730 4617 8114 8117 12956 12956 -0.10107731372045237 EMDPVTQLY 9 Unmodified _EMDPVTQLY_ 0 0 0 ALCAM|p.G535Wfs*33|1|0.3|ENSG00000170017|chr3:105552521-105552522|-/T|frameshift_variant;nc|ENSG00000170017|Q13740-2|ALCAM;ENSG00000170017|ENST00000306107|ALCAM;ENST00000481337.5_1_3:105238990-105260608:+|nuORF ALCAM|p.G535Wfs*33|1|0.3|ENSG00000170017|chr3:105552521-105552522|-/T|frameshift_variant ALCAM|p.G535Wfs*33|1|0.3|ENSG00000170017|chr3:105552521-105552522|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7888793945312 2 548.254982 1094.49541 0.24723 0.00013554 0.24317 0.00013332 0.49039 0.00026886 548.2550495926805 130.23 0.52307 125.46 125.18 125.7 -4.7725 23 14 2 0 0 0 0.66788 1 25064 25064 29.082 15.574 1 1492900 12731 118 8115 8118 12957 12957 -0.04805619627882152 EMEAPDMV 8 Unmodified _EMEAPDMV_ 0 0 0 REV__IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant REV__IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5238342285156 2 461.188254 920.361955 NaN NaN NaN NaN NaN NaN NaN 108.36 1 103.95 103.45 104.45 -4.4121 0 0 0 0.21486 1 20793 20793 5.2307 0 1 + 12732 14420 8116 8119 12958 12958 -0.1014118200523626 EMEEFTHY 8 Unmodified _EMEEFTHY_ 0 0 0 REV__tr|U7T0X4|U7T0X4_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00726PE=4SV=1 REV__tr|U7T0X4|U7T0X4_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00726PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7808837890625 2 543.215857 1084.41716 -0.0855 -4.6445E-05 0.98678 0.00053603 0.90128 0.00048959 543.2163360572334 22.663 0.28396 21.209 21.049 21.333 -1.4535 14 7 2 0 0 0 1.0147 1 3590 3590 9.3474 0 1 812430 + 12733 25282 8117 8120 12959 12959 -0.12167052213112584 EMEFKRGRFRL 11 Unmodified _EMEFKRGRFRL_ 0 0 0 ENST00000472518.1_1_2:74659592-74668973:-|nuORF;RTKN|p.L511Pfs*21|1|0.22|ENSG00000114993|chr2:74426403-74426404|-/G|frameshift_variant;ENSG00000114993|ENST00000272430|RTKN ENST00000472518.1_1_2:74659592-74668973:-|nuORF ENST00000472518.1_1_2:74659592-74668973:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26019287109375 3 490.266239 1467.77689 NaN NaN NaN NaN NaN NaN NaN 34.864 1 32.612 32.112 33.112 -2.2527 0 0 0 0.22632 1 6124 6124 0.094841 0 1 12734 2819 8118 8121 12960 12960 0.06170975522331901 EMELEKKIKI 10 Unmodified _EMELEKKIKI_ 0 0 0 REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7583618164062 2 630.865231 1259.71591 NaN NaN NaN NaN NaN NaN NaN 152.7 1 152.7 152.2 153.2 0 0 0 0 2.8426 1 30590 30590 0.013265 0 1 + 12735 14056 8119 8122 12961 12961 0.09644025699526537 EMEQGRSGGAE 11 Unmodified _EMEQGRSGGAE_ 0 0 0 REV__nc|ENSG00000167232|Q05481-2|ZNF91 REV__nc|ENSG00000167232|Q05481-2|ZNF91 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3276977539062 2 575.743302 1149.47205 0.097572 5.6176E-05 -3.0848 -0.0017761 -2.9873 -0.0017199 575.7420337230809 149.83 0.31772 145.1 144.87 145.19 -4.7323 10 8 2 0 0 0 0.92393 1 29749 29749 14.405 7.6822 1 1712600 + 12736 17913 8120 8123 12962 12962 -0.0967066541247732 EMEVETEYDME 11 Unmodified _EMEVETEYDME_ 0 0 0 REV__nc|ENSG00000030066|Q12769|NUP160 REV__nc|ENSG00000030066|Q12769|NUP160 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 468.8348388671875 3 468.844231 1403.51086 NaN NaN NaN NaN NaN NaN NaN 8.2181 1 7.5389 7.0389 8.0389 -0.67913 0 0 0 0.22632 1 831 831 0 0 1 + 12737 14013 8121 8124 12963 12963 -0.174751656836861 EMFARINVFEW 11 Unmodified _EMFARINVFEW_ 0 0 0 REV__OLFML1|p.A190V|1|0.18|ENSG00000183801|chr11:7509548-7509548|C/T|missense_variant REV__OLFML1|p.A190V|1|0.18|ENSG00000183801|chr11:7509548-7509548|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2376403808594 3 481.235945 1440.68601 NaN NaN NaN NaN NaN NaN NaN 159.26 1 153.98 153.48 154.48 -5.2748 0 0 0 0.22632 1 30908 30908 0.172 0.15873 1 + 12738 24396 8122 8125 12964 12964 -0.01670913245789052 EMFASICR 8 Unmodified _EMFASICR_ 0 0 0 nc|ENSG00000251503|Q8N2Z9-3|CENPS nc|ENSG00000251503|Q8N2Z9-3|CENPS nc|ENSG00000251503|Q8N2Z9-3|CENPS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7208251953125 2 478.720055 955.425558 NaN NaN NaN NaN NaN NaN NaN 91.215 1 87.407 86.907 87.907 -3.8083 0 0 0 0.21486 1 17461 17461 8.5933 0 1 12739 12626 8123 8126 12965 12965 -0.05393776777486892 EMFDDSCC 8 Unmodified _EMFDDSCC_ 0 0 0 ERBB4|p.I1101M|1|0.09|ENSG00000178568|chr2:211387031-211387031|A/C|missense_variant ERBB4|p.I1101M|1|0.09|ENSG00000178568|chr2:211387031-211387031|A/C|missense_variant ERBB4|p.I1101M|1|0.09|ENSG00000178568|chr2:211387031-211387031|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.0971984863281 3 317.096056 948.26634 NaN NaN NaN NaN NaN NaN NaN 156.01 1 151.23 150.73 151.73 -4.7791 0 0 0 0.21486 1 31015 31015 0.40072 0.40072 1 12740 11779 8124 8127 12966 12966 -0.20986278187785956 EMFHEMTY 8 Unmodified _EMFHEMTY_ 0 0 0 REV__nc|ENSG00000109790|Q96PQ7-4|KLHL5 REV__nc|ENSG00000109790|Q96PQ7-4|KLHL5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7762451171875 2 544.214803 1086.41505 0.1918 0.00010438 2.2952 0.0012491 2.487 0.0013534 544.7191157987033 127.95 0.20558 123.14 123 123.2 -4.817 7 5 2 0 0 0 0.98792 1 24561 24561 9.3474 5.0182 1 547240 + 12741 23998 8125 8128 12967 12967 -0.12469804222564562 EMFKRNFMT 9 Unmodified _EMFKRNFMT_ 0 0 0 REV__nc|ENSG00000116885|Q8WVF1-4|OSCP1 REV__nc|ENSG00000116885|Q8WVF1-4|OSCP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2885131835938 2 602.286094 1202.55763 NaN NaN NaN NaN NaN NaN NaN 122.03 1 117.48 116.98 117.98 -4.5476 0 0 0 0.19711 1 24052 24052 7.4771 0 1 + 12742 15505 8126 8129 12968 12968 -0.03554171760538338 EMGIGLCVPPA 11 Unmodified _EMGIGLCVPPA_ 0 0 0 ENST00000502692.5_1_11:66313918-66328094:+|nuORF ENST00000502692.5_1_11:66313918-66328094:+|nuORF ENST00000502692.5_1_11:66313918-66328094:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.770263671875 2 543.769745 1085.52494 NaN NaN NaN NaN NaN NaN NaN 25.952 1 24.304 23.804 24.804 -1.6482 0 0 0 0.22775 1 4565 4565 10.074 0 1 12743 10631 8127 8130 12969 12969 -0.014403788833988074 EMGSLADIN 9 Unmodified _EMGSLADIN_ 0 0 0 REV__TNNI3|p.R192H|1|0.35|ENSG00000129991|chr19:55151892-55151892|C/T|missense_variant REV__TNNI3|p.R192H|1|0.35|ENSG00000129991|chr19:55151892-55151892|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.11761474609375 3 317.148025 948.422247 NaN NaN NaN NaN NaN NaN NaN 103.1 1 99.078 98.578 99.578 -4.0212 0 0 0 0.23508 1 19822 19822 2.9952 1.8019 1 + 12744 15979 8128 8131 12970 12970 -0.05402748350525144 EMHGELSA 8 Unmodified _EMHGELSA_ 0 0 0 REV__ANKRD2|p.D214Afs*13|1|0.1|ENSG00000165887|chr10:97581319-97581322|GACT/-|frameshift_variant REV__ANKRD2|p.D214Afs*13|1|0.1|ENSG00000165887|chr10:97581319-97581322|GACT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2285461425781 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 99.586 1 95.317 94.817 95.817 -4.2692 0 0 0 0.23749 1 19038 19038 0.12286 0 1 + 12745 13057 8129 8132 12971 12971 -0.0714728669345277 EMHIRKHK 8 Unmodified _EMHIRKHK_ 0 0 0 REV__ENSG00000146757|ENST00000328747|ZNF92 REV__ENSG00000146757|ENST00000328747|ZNF92 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 95.869 1 91.988 91.488 92.488 -3.881 0 0 0 0.21486 1 18398 18398 3.5965 0.60125 1 + 12746 16898 8130 8133 12972 12972 0.05087733650748305 EMKEKQTEE 9 Unmodified _EMKEKQTEE_ 0 0 0 REV__nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2 REV__nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3212890625 2 576.266078 1150.5176 NaN NaN NaN NaN NaN NaN NaN 153.02 1 147.75 147.25 148.25 -5.2669 0 0 0 0.23508 1 29660 29660 6.2058 0 1 + 12747 18691 8131 8134 12973 12973 -0.051634399501153894 EMKGLSEE 8 Unmodified _EMKGLSEE_ 0 0 0 REV__ENSG00000136935|ENST00000373555|GOLGA1 REV__ENSG00000136935|ENST00000373555|GOLGA1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.53326416015625 2 461.71295 921.411348 NaN NaN NaN NaN NaN NaN NaN 62.84 1 59.879 59.379 60.379 -2.9614 0 0 0 0.23312 1 12129 12129 6.2058 6.1418 1 + 12748 16364 8132 8135 12974 12974 -0.05250150724782543 EMKKIADQ 8 Unmodified _EMKKIADQ_ 0 0 0 POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant;POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant;POLR3B|p.M1020Nfs*18|1|0.13|ENSG00000013503|chr12:106501392-106501393|-/A|frameshift_variant;ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.786865234375 2 481.75241 961.490267 NaN NaN NaN NaN NaN NaN NaN 61.66 1 58.42 57.92 58.92 -3.2395 0 0 0 0.21486 1 11545 11545 7.2892 0.56607 1 12749 1100 8133 8136 12975 12975 0.007981213001585274 EMLKWTRFWHM 11 Unmodified _EMLKWTRFWHM_ 0 0 0 REV__ENST00000533761.5_2_11:82985654-82991222:-|nuORF REV__ENST00000533761.5_2_11:82985654-82991222:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2704467773438 3 522.256575 1563.7479 NaN NaN NaN NaN NaN NaN NaN 119.8 1 115.16 114.66 115.66 -4.645 0 0 0 0.22632 1 22993 22993 0.172 0 1 + 12750 22799 8134 8137 12976 12976 -0.011428850983065786 EMLKWTRFWHM 11 Unmodified _EMLKWTRFWHM_ 0 0 0 REV__ENST00000533761.5_2_11:82985654-82991222:-|nuORF REV__ENST00000533761.5_2_11:82985654-82991222:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2626342773438 3 522.256575 1563.7479 NaN NaN NaN NaN NaN NaN NaN 119.85 1 115.2 114.7 115.7 -4.645 0 0 0 0.22632 1 23000 23000 0.172 0 1 + 12751 22799 8134 8137 12977 12977 -0.011428850983065786 EMLSRIHQA 9 Unmodified _EMLSRIHQA_ 0 0 0 REV__nc|ENSG00000115266|O95996-3|APC2 REV__nc|ENSG00000115266|O95996-3|APC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7758178710938 2 542.782033 1083.54951 -0.28506 -0.00015473 -2.4305 -0.0013193 -2.7156 -0.001474 542.7808961897233 19.636 0.8351 18.311 17.931 18.766 -1.3251 37 23 3 0 0 0 0.67531 1 2976 2976 7.9102 0.62092 1 726320 + 12752 15416 8135 8138 12978 12978 0.011080173143454886 EMLSRIHQA 9 Unmodified _EMLSRIHQA_ 0 0 0 REV__nc|ENSG00000115266|O95996-3|APC2 REV__nc|ENSG00000115266|O95996-3|APC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.782033 1083.54951 0.28167 0.00015289 -2.3428 -0.0012716 -2.0611 -0.0011187 542.7807029649406 18.358 0.63334 18.358 17.84 18.474 0 0.00069943 -0.00013414 NaN 7.9102 20 17 2 NaN NaN NaN NaN 0 NaN NaN 0 908710 + 12753 15416 8135 8138 0.011080173143454886 EMLSRIHQA 9 Unmodified _EMLSRIHQA_ 0 0 0 REV__nc|ENSG00000115266|O95996-3|APC2 REV__nc|ENSG00000115266|O95996-3|APC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.782033 1083.54951 0.41466 0.00022507 -2.8675 -0.0015564 -2.4528 -0.0013314 542.7803832881553 19.88 0.80284 18.483 17.992 18.795 -1.3966 0.12561 -0.00070372 NaN 7.9102 33 22 2 NaN NaN NaN NaN 0 NaN NaN 0 849010 + 12754 15416 8135 8138 0.011080173143454886 EMLSRIHQA 9 Unmodified _EMLSRIHQA_ 0 0 0 REV__nc|ENSG00000115266|O95996-3|APC2 REV__nc|ENSG00000115266|O95996-3|APC2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.782033 1083.54951 -0.28506 -0.00015473 -2.4305 -0.0013193 -2.7156 -0.001474 542.7808961897233 19.636 0.8351 18.311 17.931 18.766 -1.3251 -0.046703 -0.00022939 NaN 7.9102 37 23 3 NaN NaN NaN NaN 0 NaN NaN 0 726320 + 12755 15416 8135 8138 0.011080173143454886 EMLSRIHQA 9 Unmodified _EMLSRIHQA_ 0 0 0 REV__nc|ENSG00000115266|O95996-3|APC2 REV__nc|ENSG00000115266|O95996-3|APC2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.782033 1083.54951 -0.85844 -0.00046595 -1.4835 -0.0008052 -2.3419 -0.0012711 542.7809304757363 19.913 1.0424 18.278 17.739 18.781 -1.6351 -0.079602 0.00079873 NaN 7.9102 36 29 3 NaN NaN NaN NaN 0 NaN NaN 0 570560 + 12756 15416 8135 8138 0.011080173143454886 EMLVENLRPC 10 Unmodified _EMLVENLRPC_ 0 0 0 REV__nc|ENSG00000142794|Q9H094-4|NBPF3 REV__nc|ENSG00000142794|Q9H094-4|NBPF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2988891601562 2 602.296659 1202.57876 NaN NaN NaN NaN NaN NaN NaN 46.583 1 43.718 43.218 44.218 -2.8653 0 0 0 0.22588 1 8472 8472 6.7232 0.99131 1 + 12757 16690 8136 8139 12979 12979 -0.014422064516566024 EMLYLPAL 8 Unmodified _EMLYLPAL_ 0 0 0 ENSG00000243789|ENST00000397299|JMJD7 ENSG00000243789|ENST00000397299|JMJD7 ENSG00000243789|ENST00000397299|JMJD7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1267395019531 3 317.173623 948.499041 NaN NaN NaN NaN NaN NaN NaN 99.862 1 95.872 95.372 96.372 -3.9895 0 0 0 0.21486 1 19177 19177 1.8442 0 1 12758 7874 8137 8140 12980 12980 0.022730949366405184 EMNDCDNCC 9 Unmodified _EMNDCDNCC_ 0 0 0 tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1 tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1 tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6832275390625 2 523.637745 1045.26094 NaN NaN NaN NaN NaN NaN NaN 152.74 1 147.47 146.97 147.97 -5.2669 0 0 0 0.23508 1 29609 29609 2.0598 0.73022 1 12759 26476 8138 8141 12981 12981 -0.25988325041907956 EMNSQQEEE 9 Unmodified _EMNSQQEEE_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2;ENST00000525207.1_1_11:65824747-65825957:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2138366699219 3 375.145121 1122.41353 NaN NaN NaN NaN NaN NaN NaN 109.52 1 105.14 104.64 105.64 -4.3776 0 0 0 0.19634 1 21584 21584 0.029283 0 1 12760 1718 8139 8142 12982 12982 -0.14277766777604484 EMNVYSANIY 10 Unmodified _EMNVYSANIY_ 0 0 0 REV__nc|ENSG00000070159|P26045-3|PTPN3 REV__nc|ENSG00000070159|P26045-3|PTPN3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2723388671875 2 602.271164 1202.52777 NaN NaN NaN NaN NaN NaN NaN 97.153 1 93.055 92.555 93.555 -4.0978 0 0 0 0.22583 1 19060 19060 13.906 3.1065 1 + 12761 14251 8140 8143 12983 12983 -0.06538832224873659 EMPCFLFR 8 Unmodified _EMPCFLFR_ 0 0 0 ENSG00000099338|ENST00000409235|CATSPERG;ENST00000412458.6_1_19:38845366-38860119:+|nuORF;CATSPERG|p.N913D|1|0.09|ENSG00000099338|chr19:38367279-38367279|A/G|missense_variant ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2614135742188 2 521.746073 1041.47759 -0.046192 -2.4101E-05 0.41176 0.00021483 0.36556 0.00019073 521.746219558672 83.005 0.68457 79.306 79.006 79.69 -3.6985 39 19 3 0 0 0 0.96284 1 15846 15846 19.439 19.439 1 5271100 12762 1888 8141 8144 12984 12984 -0.04148613363736331 EMPCFLFR 8 Unmodified _EMPCFLFR_ 0 0 0 ENSG00000099338|ENST00000409235|CATSPERG;ENST00000412458.6_1_19:38845366-38860119:+|nuORF;CATSPERG|p.N913D|1|0.09|ENSG00000099338|chr19:38367279-38367279|A/G|missense_variant ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.746073 1041.47759 -0.23779 -0.00012407 0.58695 0.00030624 0.34916 0.00018217 521.7463180152972 82.78 0.80702 79.172 78.812 79.619 -3.6079 -0.077348 -1.9898E-05 NaN 19.439 53 22 3 NaN NaN NaN NaN 0 NaN NaN 0 7076300 12763 1888 8141 8144 -0.04148613363736331 EMPCFLFR 8 Unmodified _EMPCFLFR_ 0 0 0 ENSG00000099338|ENST00000409235|CATSPERG;ENST00000412458.6_1_19:38845366-38860119:+|nuORF;CATSPERG|p.N913D|1|0.09|ENSG00000099338|chr19:38367279-38367279|A/G|missense_variant ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.746073 1041.47759 -0.61592 -0.00032136 0.81206 0.00042369 0.19614 0.00010233 521.7464832675496 83.144 0.69085 79.27 78.95 79.641 -3.8736 0.020809 0.000215 NaN 19.439 47 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7844100 12764 1888 8141 8144 -0.04148613363736331 EMPCHYWRNF 10 Unmodified _EMPCHYWRNF_ 0 0 0 REV__ENST00000359774.8_1_2:160139329-160139368:-|nuORF REV__ENST00000359774.8_1_2:160139329-160139368:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5314025878906 3 461.530475 1381.5696 NaN NaN NaN NaN NaN NaN NaN 158.67 1 158.67 158.17 159.17 0 0 0 0 2.8426 1 31858 31858 0.043787 0.042406 1 + 12765 20856 8142 8145 12985 12985 -0.1059255501734242 EMPHSKGQ 8 Unmodified _EMPHSKGQ_ 0 0 0 ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant;ABL1|p.R785Gfs*3|2|0.3|ENSG00000097007|chr9:130884637-130884637|C/-|frameshift_variant;ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 305.0518798828125 3 305.144727 912.412351 NaN NaN NaN NaN NaN NaN NaN 4.2278 1 3.1878 2.6878 3.6878 -1.04 0 0 0 0.21486 1 56 56 0.45834 0 1 12766 23 8143 8146 12986 12986 -0.04735891565212569 EMQDEDLY 8 Unmodified _EMQDEDLY_ 0 0 0 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2614135742188 2 521.705322 1041.39609 -0.03734 -1.9481E-05 -1.711 -0.00089264 -1.7483 -0.00091212 521.7037993953622 83.205 1.001 79.506 78.969 79.97 -3.6985 90 28 5 0 0 0 0.99494 1 15846 15846 13.508 4.1604 1 5194600 + 12767 18323 8144 8147 12987 12987 -0.12295062312614391 EMQELARPL 9 Unmodified _EMQELARPL_ 0 0 0 REV__ENST00000485738.5_1_20:13765717-13782219:+|nuORF REV__ENST00000485738.5_1_20:13765717-13782219:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.784423828125 2 543.784241 1085.55393 -0.13059 -7.1011E-05 -0.29996 -0.00016311 -0.43054 -0.00023412 543.7842463197084 106.34 1.6071 102.08 101.13 102.74 -4.2638 157 45 5 0 0 0 0.27986 2 21001 21001;21062 32.786 5.8742 1 34361000 + 12768 22226 8145 8148 12988;12989 12988 0.014574817372704274 EMQELARPL 9 Unmodified _EMQELARPL_ 0 0 0 REV__ENST00000485738.5_1_20:13765717-13782219:+|nuORF REV__ENST00000485738.5_1_20:13765717-13782219:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7843017578125 2 543.784241 1085.55393 0.81454 0.00044293 -1.2265 -0.00066695 -0.41195 -0.00022401 543.7837233856028 106.2 1.5902 102.11 101.16 102.75 -4.0913 145 45 5 0 0 0 0.13999 1 20403 20403 22.621 10.871 1 30328000 + 12769 22226 8145 8148 12990 12990 0.014574817372704274 EMQERLLPA 9 Unmodified _EMQERLLPA_ 0 0 0 ENST00000534425.5_1_11:67431830-67435009:-|nuORF;ENSG00000132746|ENST00000673966|ALDH3B2;nc|ENSG00000006534|P43353-2|ALDH3B1;ENSG00000006534|ENST00000342456|ALDH3B1 ENST00000534425.5_1_11:67431830-67435009:-|nuORF ENST00000534425.5_1_11:67431830-67435009:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7841796875 2 543.784241 1085.55393 -0.13059 -7.1011E-05 -0.29996 -0.00016311 -0.43054 -0.00023412 543.7842463197084 106.34 1.6071 102.08 101.13 102.74 -4.2638 157 45 5 0 0 0 0.088942 1 20905 20905 59.368 4.5948 1 34361000 12770 3759 8146 8149 12991 12991 0.014574817372704274 EMQRDHRA 8 Unmodified _EMQRDHRA_ 0 0 0 ENST00000588075.5_3_17:76993904-76996331:-|nuORF;ENST00000588611.5_1_17:76993706-77001537:-|nuORF ENST00000588075.5_3_17:76993904-76996331:-|nuORF ENST00000588075.5_3_17:76993904-76996331:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2620239257812 2 521.745982 1041.47741 0.64655 0.00033734 -0.1516 -7.9099E-05 0.49495 0.00025824 521.745736660572 79.191 0.83259 79.191 78.749 79.582 0 44 23 3 0 0 0 0.94768 1 15423 15423 24.021 24.021 1 5780700 12771 11568 8147 8150 12992 12992 -0.041668970393629934 EMRWWHEWRRH 11 Unmodified _EMRWWHEWRRH_ 0 0 0 REV__ENST00000398117.1_1_18:60791148-60791340:-|nuORF REV__ENST00000398117.1_1_18:60791148-60791340:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 570.3275146484375 3 570.272387 1707.79533 0.2808 0.00016013 4.453 0.0025394 4.7338 0.0026996 570.6089296080236 139.52 0.21199 139.52 139.43 139.64 0 7 5 2 0 0 0 0.89136 1 27735 27735 0 0 1 4990100 + 12772 21322 8148 8151 12993 12993 -0.030254697830969235 EMSGGYLSI 9 Unmodified _EMSGGYLSI_ 0 0 0 REV__nc|ENSG00000188452|Q49MI3-9|CERKL REV__nc|ENSG00000188452|Q49MI3-9|CERKL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7413635253906 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 150.98 1 146.23 145.73 146.73 -4.7523 0 0 0 0.22621 1 29992 29992 15.847 3.3156 1 + 12773 24217 8149 8152 12994 12994 -0.04741560345121343 EMTKIVRC 8 Unmodified _EMTKIVRC_ 0 0 0 REV__ENST00000600997.5_1_19:18702792-18702987:+|nuORF REV__ENST00000600997.5_1_19:18702792-18702987:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25518798828125 2 490.256805 978.499057 NaN NaN NaN NaN NaN NaN NaN 166.54 1 166.54 166.04 167.04 0 0 0 0 0.21486 1 33939 33939 11.64 3.047 1 + 12774 23416 8150 8153 12995 12995 0.008947716649913673 EMVALIKKF 9 Unmodified _EMVALIKKF_ 0 0 0 REV__nc|ENSG00000188452|Q49MI3-9|CERKL REV__nc|ENSG00000188452|Q49MI3-9|CERKL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2157287597656 3 360.215822 1077.62564 NaN NaN NaN NaN NaN NaN NaN 120.64 1 116 115.5 116.5 -4.645 0 0 0 0.23508 1 23158 23158 1.1933 0 1 + 12775 24217 8151 8154 12996 12996 0.08993021161768411 EMVKEFTL 8 Unmodified _EMVKEFTL_ 0 0 0 ENSG00000117408|ENST00000372343|IPO13 ENSG00000117408|ENST00000372343|IPO13 ENSG00000117408|ENST00000372343|IPO13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.8548889160156 3 332.840533 995.499769 NaN NaN NaN NaN NaN NaN NaN 40.001 1 37.461 36.961 37.961 -2.5398 0 0 0 0.21486 1 7157 7157 1.6526 0 1 12776 2983 8152 8155 12997 12997 0.00183889585707675 EMVKVEML 8 Unmodified _EMVKVEML_ 0 0 0 REV__ENST00000260605.12_1_2:44001254-44010677:+|nuORF REV__ENST00000260605.12_1_2:44001254-44010677:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25531005859375 2 489.753564 977.492575 0.14457 7.0802E-05 -0.036728 -1.7988E-05 0.10784 5.2815E-05 489.75349504383837 130.13 0.63484 125.3 124.9 125.54 -4.8355 26 17 2 0 0 0 0.59076 1 25015 25015 22.736 1.1993 1 1782000 + 12777 20160 8153 8156 12998 12998 0.0029283371362680555 EMVKVEML 8 Unmodified _EMVKVEML_ 0 0 0 REV__ENST00000260605.12_1_2:44001254-44010677:+|nuORF REV__ENST00000260605.12_1_2:44001254-44010677:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2557373046875 2 489.753564 977.492575 -0.073811 -3.6149E-05 0.41986 0.00020563 0.34605 0.00016948 489.7537287651154 130.13 0.59306 125.36 125.04 125.63 -4.7725 21 16 2 0 0 0 0.39104 1 25035 25035 32.786 2.9451 1 896490 + 12778 20160 8153 8156 12999 12999 0.0029283371362680555 EMWYPKWRRFA 11 Unmodified _EMWYPKWRRFA_ 0 0 0 ENSG00000147174|ENST00000373696|GCNA;ENST00000471950.1_1_X:70828916-70832410:+|nuORF ENSG00000147174|ENST00000373696|GCNA ENSG00000147174|ENST00000373696|GCNA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3906860351562 2 785.392813 1568.77107 NaN NaN NaN NaN NaN NaN NaN 131.89 1 131.89 131.39 132.39 0 0 0 0 0.23698 1 26067 26067 1.3295 0.13619 1 12779 4690 8154 8157 13000 13000 0.00943877010649885 EMWYPKWRRFA 11 Unmodified _EMWYPKWRRFA_ 0 0 0 ENSG00000147174|ENST00000373696|GCNA;ENST00000471950.1_1_X:70828916-70832410:+|nuORF ENSG00000147174|ENST00000373696|GCNA ENSG00000147174|ENST00000373696|GCNA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3902587890625 2 785.392813 1568.77107 NaN NaN NaN NaN NaN NaN NaN 133.77 1 133.77 133.27 134.27 0 0 0 0 0.23698 1 26466 26466 1.3295 0.13619 1 12780 4690 8154 8157 13001 13001 0.00943877010649885 EMWYPKWRRFA 11 Unmodified _EMWYPKWRRFA_ 0 0 0 ENSG00000147174|ENST00000373696|GCNA;ENST00000471950.1_1_X:70828916-70832410:+|nuORF ENSG00000147174|ENST00000373696|GCNA ENSG00000147174|ENST00000373696|GCNA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.392333984375 2 785.392813 1568.77107 NaN NaN NaN NaN NaN NaN NaN 155.06 1 150.28 149.78 150.78 -4.7791 0 0 0 0.22632 1 30827 30827 0.026206 0.026206 1 12781 4690 8154 8157 13002 13002 0.00943877010649885 EMWYPKWRRFA 11 Unmodified _EMWYPKWRRFA_ 0 0 0 ENSG00000147174|ENST00000373696|GCNA;ENST00000471950.1_1_X:70828916-70832410:+|nuORF ENSG00000147174|ENST00000373696|GCNA ENSG00000147174|ENST00000373696|GCNA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3917846679688 2 785.392813 1568.77107 NaN NaN NaN NaN NaN NaN NaN 176.44 1 171.65 171.15 172.15 -4.7898 0 0 0 0.23698 1 36079 36079 0.30703 0 1 12782 4690 8154 8157 13003 13003 0.00943877010649885 EMWYPKWRRFA 11 Unmodified _EMWYPKWRRFA_ 0 0 0 ENSG00000147174|ENST00000373696|GCNA;ENST00000471950.1_1_X:70828916-70832410:+|nuORF ENSG00000147174|ENST00000373696|GCNA ENSG00000147174|ENST00000373696|GCNA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3907470703125 2 785.392813 1568.77107 NaN NaN NaN NaN NaN NaN NaN 162.37 1 157.19 156.69 157.69 -5.1878 0 0 0 0.22632 1 31527 31527 0.026206 0 1 12783 4690 8154 8157 13004 13004 0.00943877010649885 ENAINEYR 8 Unmodified _ENAINEYR_ 0 0 0 nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 504.73077392578125 2 504.740888 1007.46722 -0.18017 -9.0939E-05 0.58838 0.00029698 0.40821 0.00020604 504.74126951289185 37.059 0.75468 34.711 34.413 35.167 -2.3479 26 21 2 0 0 0 0.71273 1 6602 6602 12.532 0 1 806090 12784 2797 8155 8158 13005 13005 -0.03621181492940195 ENAINEYR 8 Unmodified _ENAINEYR_ 0 0 0 nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 504.740888 1007.46722 0.19334 9.7587E-05 0.034214 1.7269E-05 0.22755 0.00011486 504.74098429689275 34.733 0.6155 34.733 34.379 34.995 0 0.033997 -0.00039126 NaN 12.532 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 576910 12785 2797 8155 8158 -0.03621181492940195 ENAINEYR 8 Unmodified _ENAINEYR_ 0 0 0 nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 504.740888 1007.46722 -0.44203 -0.00022311 0.84286 0.00042542 0.40082 0.00020231 504.7413151508993 37.101 0.71948 34.632 34.331 35.05 -2.4688 -0.067398 0.00042505 NaN 12.532 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 603150 12786 2797 8155 8158 -0.03621181492940195 ENAINEYR 8 Unmodified _ENAINEYR_ 0 0 0 nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 504.740888 1007.46722 0.13938 7.035E-05 0.18847 9.5128E-05 0.32785 0.00016548 504.74095813901147 37.058 0.59681 34.721 34.349 34.946 -2.3375 0.021429 -0.00023554 NaN 12.532 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 576470 12787 2797 8155 8158 -0.03621181492940195 ENCCVFRDRLV 11 Unmodified _ENCCVFRDRLV_ 0 0 0 DNAH1|p.R2474C|1|0.32|ENSG00000114841|chr3:52379947-52379947|C/T|missense_variant DNAH1|p.R2474C|1|0.32|ENSG00000114841|chr3:52379947-52379947|C/T|missense_variant DNAH1|p.R2474C|1|0.32|ENSG00000114841|chr3:52379947-52379947|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 451.885009765625 3 451.884918 1352.63293 NaN NaN NaN NaN NaN NaN NaN 9.6137 1 9.6137 9.1137 10.114 0 0 0 0 0.23698 1 1131 1131 0.094841 0.094841 1 12788 859 8156 8159 13006 13006 -0.029286143001172604 ENCDERFQY 9 Unmodified _ENCDERFQY_ 0 0 0 ENSG00000198740|ENST00000430262|ZNF652 ENSG00000198740|ENST00000430262|ZNF652 ENSG00000198740|ENST00000430262|ZNF652 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.28515625 2 602.240395 1202.46624 NaN NaN NaN NaN NaN NaN NaN 50.702 1 47.65 47.15 48.15 -3.0517 0 0 0 0.23508 1 9323 9323 7.9102 0 1 12789 7484 8157 8160 13007 13007 -0.12689763924140607 ENCFPWNVDG 10 Unmodified _ENCFPWNVDG_ 0 0 0 nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-3|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL nc|ENSG00000188452|Q49MI3-4|CERKL nc|ENSG00000188452|Q49MI3-4|CERKL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2669067382812 2 590.740031 1179.46551 NaN NaN NaN NaN NaN NaN NaN 110.39 1 106.16 105.66 106.66 -4.2289 0 0 0 0.22588 1 21246 21246 5.7319 0.97584 1 12790 7170 8158 8161 13008 13008 -0.11704558573228496 ENCLKAIRP 9 Unmodified _ENCLKAIRP_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant;DNAH9|p.I3688Tfs*40|1|0.11|ENSG00000007174|chr17:11886915-11886924|ATCATGAACG/-|frameshift_variant nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.280029296875 2 522.286951 1042.55935 NaN NaN NaN NaN NaN NaN NaN 77.902 1 74.439 73.939 74.939 -3.4633 0 0 0 0.23508 1 15210 15210 6.7232 0 1 12791 1016 8159 8162 13009 13009 0.039772053197111745 ENCLQEVDDPV 11 Unmodified _ENCLQEVDDPV_ 0 0 0 REV__RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant REV__RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.77685546875 2 630.774267 1259.53398 NaN NaN NaN NaN NaN NaN NaN 100.72 1 96.73 96.23 97.23 -3.9895 0 0 0 0.22501 1 19354 19354 12.241 2.8575 1 + 12792 17673 8160 8163 13010 13010 -0.08540358784034652 ENDEMEPAL 9 Unmodified _ENDEMEPAL_ 0 0 0 REV__nc|ENSG00000068438|Q9UET6-2|FTSJ1 REV__nc|ENSG00000068438|Q9UET6-2|FTSJ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6929321289062 2 524.218597 1046.42264 -0.19282 -0.00010108 1.1613 0.0006088 0.96852 0.00050772 524.2192479482281 84.129 0.5151 80.465 80.3 80.815 -3.6641 22 14 2 0 0 0 0.76271 1 16441 16441 14.838 14.838 1 1260100 + 12793 14228 8161 8164 13011 13011 -0.09871373421287899 ENDEMEPAL 9 Unmodified _ENDEMEPAL_ 0 0 0 REV__nc|ENSG00000068438|Q9UET6-2|FTSJ1 REV__nc|ENSG00000068438|Q9UET6-2|FTSJ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6788330078125 2 524.218597 1046.42264 0.020922 1.0968E-05 0.68854 0.00036095 0.70947 0.00037191 524.2188049502105 84.289 0.4929 80.577 80.274 80.767 -3.7117 22 13 2 0 0 0 0.71527 1 16096 16096 19.257 19.257 1 1658700 + 12794 14228 8161 8164 13012 13012 -0.09871373421287899 ENDEMEPAL 9 Unmodified _ENDEMEPAL_ 0 0 0 REV__nc|ENSG00000068438|Q9UET6-2|FTSJ1 REV__nc|ENSG00000068438|Q9UET6-2|FTSJ1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 524.218597 1046.42264 0.57212 0.00029992 -0.15713 -8.2368E-05 0.415 0.00021755 524.218576942835 80.323 0.48203 80.323 80.039 80.521 0 -0.16227 -0.00099903 NaN 19.257 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2014200 + 12795 14228 8161 8164 -0.09871373421287899 ENDHHKFHPLP 11 Unmodified _ENDHHKFHPLP_ 0 0 0 nc|ENSG00000008083|Q92833-2|JARID2;nc|ENSG00000008083|Q92833-3|JARID2;JARID2|p.E1073Kfs*106|1|0.17|ENSG00000008083|chr6:15512989-15512989|A/-|frameshift_variant;ENSG00000008083|ENST00000341776|JARID2 nc|ENSG00000008083|Q92833-2|JARID2 nc|ENSG00000008083|Q92833-2|JARID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2275085449219 3 457.558187 1369.65273 0.14666 6.7108E-05 1.7209 0.00078743 1.8676 0.00085454 457.55897966314257 34.164 0.44732 32.018 31.809 32.256 -2.1468 30 12 3 0 0 0 0.79645 1 6003 6003 4.1166 1.4854 1 1951800 12796 1035 8162 8165 13013 13013 -0.01730778973478664 ENDRKQSFVEG 11 Unmodified _ENDRKQSFVEG_ 0 0 0 REV__nc|ENSG00000265944|J3KSC0|LINC01387 REV__nc|ENSG00000265944|J3KSC0|LINC01387 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2159423828125 3 436.877474 1307.61059 NaN NaN NaN NaN NaN NaN NaN 50.272 1 50.272 49.772 50.772 0 0 0 0 0.23307 1 9518 9518 5.8681 0.084707 1 + 12797 24301 8163 8166 13014 13014 -0.030907991724916428 ENECFLDFEV 10 Unmodified _ENECFLDFEV_ 0 0 0 nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;PCDH7|p.H835Tfs*53|1|0.16|ENSG00000169851|chr4:31142537-31142537|C/-|frameshift_variant;ENSG00000169851|ENST00000695919|PCDH7;PCDH7|p.K1017Nfs*110|1|0.13|ENSG00000169851|chr4:30724467-30724467|A/-|frameshift_variant;PCDH7|p.D918Ifs*209|1|0.36|ENSG00000169851|chr4:30724168-30724168|A/-|frameshift_variant;PCDH7|p.V732Cfs*4|1|0.45|ENSG00000169851|chr4:30723610-30723611|-/T|frameshift_variant nc|ENSG00000169851|O60245|PCDH7 nc|ENSG00000169851|O60245|PCDH7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.766845703125 2 622.760629 1243.5067 NaN NaN NaN NaN NaN NaN NaN 62.961 1 60 59.5 60.5 -2.9614 0 0 0 0.22588 1 12152 12152 5.7319 0 1 12798 6010 8164 8167 13015 13015 -0.10530842324419609 ENEECTMIDP 10 Unmodified _ENEECTMIDP_ 0 0 0 PARVB|p.R73C|1|0.24|ENSG00000188677|chr22:44100067-44100067|C/T|missense_variant PARVB|p.R73C|1|0.24|ENSG00000188677|chr22:44100067-44100067|C/T|missense_variant PARVB|p.R73C|1|0.24|ENSG00000188677|chr22:44100067-44100067|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2659912109375 2 590.728471 1179.44239 NaN NaN NaN NaN NaN NaN NaN 55.373 1 52.489 51.989 52.989 -2.8837 0 0 0 0.22552 1 10594 10594 18.146 4.2403 1 12799 12754 8165 8168 13016 13016 -0.14015365472846497 ENEEENRPLM 10 Unmodified _ENEEENRPLM_ 0 0 0 nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2 nc|ENSG00000101977|P10911|MCF2 nc|ENSG00000101977|P10911|MCF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.77880859375 2 630.779884 1259.54522 NaN NaN NaN NaN NaN NaN NaN 45.794 1 42.927 42.427 43.427 -2.8666 0 0 0 0.22588 1 8316 8316 6.2058 1.3088 1 12800 2102 8166 8169 13017 13017 -0.07417536689877124 ENEEKLKELE 10 Unmodified _ENEEKLKELE_ 0 0 0 nc|ENSG00000166881|O14524-2|NEMP1;ENSG00000166881|ENST00000300128|NEMP1 nc|ENSG00000166881|O14524-2|NEMP1 nc|ENSG00000166881|O14524-2|NEMP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.759521484375 2 630.819532 1259.62451 NaN NaN NaN NaN NaN NaN NaN 101.05 1 96.751 96.251 97.251 -4.297 0 0 0 0.22588 1 19333 19333 8.1555 1.0538 1 12801 5758 8167 8170 13018 13018 0.0050843353592426865 ENEFQSQQN 9 Unmodified _ENEFQSQQN_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.A1154Qfs*28|1|0.42|ENSG00000075292|chr2:71422969-71422969|A/-|frameshift_variant;ZNF638|p.K292Dfs*14|1|0.07|ENSG00000075292|chr2:71349827-71349828|CA/-|frameshift_variant;ZNF638|p.K640Tfs*45|1|0.04|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant;nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2164001464844 3 375.15987 1122.45778 0.1273 4.7756E-05 -0.48171 -0.00018072 -0.35441 -0.00013296 375.1597364996129 95.923 0.58473 91.732 91.444 92.028 -4.1912 22 16 2 0 0 0 0.39231 1 18335 18335 0.40827 0 1 1312700 12802 1515 8168 8171 13019 13019 -0.09854994569127484 ENEIKVNQI 9 Unmodified _ENEIKVNQI_ 0 0 0 REV__STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant REV__STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7930908203125 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 41.135 1 41.135 40.635 41.635 0 0 0 0 0.21844 1 7668 7668 18.146 1.9972 1 + 12803 24750 8169 8172 13020 13020 0.032325202637593975 ENEIRGLCL 9 Unmodified _ENEIRGLCL_ 0 0 0 ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF ENSG00000186298|ENST00000335007|PPP1CC ENSG00000186298|ENST00000335007|PPP1CC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6790771484375 2 523.768591 1045.52263 0.22456 0.00011762 1.5435 0.00080843 1.768 0.00092605 523.7702958616381 130.26 0.20599 125.49 125.43 125.63 -4.7725 6 5 2 0 0 0 0.8319 1 25054 25054 4.3292 0 1 887000 12804 6228 8170 8173 13021 13021 0.0016890870317638473 ENEKVFRY 8 Unmodified _ENEKVFRY_ 0 0 0 REV__ENSG00000174885|ENST00000534750|NLRP6 REV__ENSG00000174885|ENST00000534750|NLRP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7955322265625 2 542.774731 1083.53491 0.10448 5.6708E-05 3.6123 0.0019607 3.7168 0.0020174 543.2767450055809 141.87 0.52185 136.88 136.45 136.97 -4.9877 23 14 3 0 0 0 0.68128 1 27311 27311 16.942 0 1 4352400 + 12805 18436 8171 8174 13022 13022 -0.003517315621365924 ENEKVFRY 8 Unmodified _ENEKVFRY_ 0 0 0 REV__ENSG00000174885|ENST00000534750|NLRP6 REV__ENSG00000174885|ENST00000534750|NLRP6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.774731 1083.53491 0.10448 5.6708E-05 3.6123 0.0019607 3.7168 0.0020174 543.2767450055809 141.87 0.52185 136.88 136.45 136.97 -4.9877 0 0 NaN 16.942 23 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4352400 + 12806 18436 8171 8174 -0.003517315621365924 ENELFAEQR 9 Unmodified _ENELFAEQR_ 0 0 0 REV__nc|ENSG00000163554|P02549-2|SPTA1 REV__nc|ENSG00000163554|P02549-2|SPTA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 379.186279296875 3 379.184127 1134.53055 NaN NaN NaN NaN NaN NaN NaN 44.205 1 41.438 40.938 41.938 -2.7661 0 0 0 0.18966 1 7996 7996 1.2148 0 1 + 12807 17584 8172 8175 13023 13023 -0.031332407757190595 ENELVQAA 8 Unmodified _ENELVQAA_ 0 0 0 REV__nc|ENSG00000221990|Q8N2X6|EXOC3-AS1 REV__nc|ENSG00000221990|Q8N2X6|EXOC3-AS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2195129394531 2 437.219257 872.423961 -0.48688 -0.00021287 0.5538 0.00024213 0.06692 2.9259E-05 437.2194805166386 35.743 1.1014 33.349 32.915 34.016 -2.3938 62 30 3 0 0 0 8448 1 6520 6520 6.2058 0 1 3754500 + 12808 24275 8173 8176 13024 13024 -0.017353712702401936 ENENKIID 8 Unmodified _ENENKIID_ 0 0 0 REV__SLCO1A2|p.C314Tfs*12|1|0.06|ENSG00000084453|chr12:21297540-21297541|-/TT|frameshift_variant REV__SLCO1A2|p.C314Tfs*12|1|0.06|ENSG00000084453|chr12:21297540-21297541|-/TT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 487.7431640625 2 487.743096 973.47164 NaN NaN NaN NaN NaN NaN NaN 96.087 1 91.896 91.396 92.396 -4.1911 0 0 0 0.22628 1 18344 18344 2.643 0 1 + 12809 14466 8174 8177 13025 13025 -0.016157170700353163 ENEPNVPY 8 Unmodified _ENEPNVPY_ 0 0 0 LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant;LY75|p.K1412Rfs*2|4|0.39|ENSG00000054219|chr2:159816951-159816951|T/-|frameshift_variant;LY75|p.Q1410Tfs*6|1|0.07|ENSG00000054219|chr2:159816959-159816960|-/GGGTT|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2355041503906 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 23.192 1 21.403 20.903 21.903 -1.7886 0 0 0 0.21486 1 3719 3719 12.532 0.89125 1 12810 1261 8175 8178 13026 13026 -0.06291675132843011 ENEQCCSD 8 Unmodified _ENEQCCSD_ 0 0 0 REV__TMEM92|p.P117Hfs*7|1|0.42|ENSG00000167105|chr17:50278976-50278976|C/-|frameshift_variant REV__TMEM92|p.P117Hfs*7|1|0.42|ENSG00000167105|chr17:50278976-50278976|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.1288757324219 2 464.144575 926.274596 NaN NaN NaN NaN NaN NaN NaN 69.44 1 66.049 65.549 66.549 -3.3903 0 0 0 0.21486 1 13133 13133 5.2307 0 1 + 12811 17901 8176 8179 13027 13027 -0.1914900794680534 ENEQLIVSY 9 Unmodified _ENEQLIVSY_ 0 0 0 REV__ENST00000434827.1_1_22:25745816-25746155:-|nuORF REV__ENST00000434827.1_1_22:25745816-25746155:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7842407226562 2 547.771854 1093.52915 0.36856 0.00020189 1.0371 0.00056808 1.4056 0.00076997 547.7716389667474 116.96 0.56734 112.37 112.04 112.61 -4.5815 31 15 4 0 0 0 0.42844 1 22466 22466 24.021 8.1734 1 1835900 + 12812 21654 8177 8180 13028 13028 -0.01386874864465426 ENESLFLMV 9 Unmodified _ENESLFLMV_ 0 0 0 ENST00000574287.1_1_16:11941440-11945369:-|nuORF;RSL1D1|p.K240Nfs*9|1|0.37|ENSG00000171490|chr16:11841916-11841916|T/-|frameshift_variant;ENSG00000171490|ENST00000571133|RSL1D1 ENST00000574287.1_1_16:11941440-11945369:-|nuORF ENST00000574287.1_1_16:11941440-11945369:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.263916015625 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 107.59 1 107.59 107.09 108.09 0 0 0 0 0.13613 1 21156 21156 32.305 1.6689 1 12813 6149 8178 8181 13029 13029 -0.02089029248213592 ENEVEGKEN 9 Unmodified _ENEVEGKEN_ 0 0 0 tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.68310546875 2 524.233093 1046.45163 0.46932 0.00024603 1.8922 0.00099195 2.3615 0.001238 524.2340755045059 29.358 0.53271 27.402 27.085 27.618 -1.9561 20 14 2 0 0 0 0.73268 1 5228 5228 18.146 8.0724 1 662610 12814 26356 8179 8182 13030 13030 -0.06973512800664139 ENEVEGKEN 9 Unmodified _ENEVEGKEN_ 0 0 0 tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 524.233093 1046.45163 0.23147 0.00012135 2.8138 0.0014751 3.0453 0.0015965 524.2346940959541 27.525 0.38142 27.525 27.25 27.631 0 0.095075 0.00047332 NaN 18.146 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 583900 12815 26356 8179 8182 -0.06973512800664139 ENEVEGKEN 9 Unmodified _ENEVEGKEN_ 0 0 0 tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.233093 1046.45163 0.51774 0.00027142 2.0932 0.0010973 2.611 0.0013687 524.2341110791131 29.439 0.41605 27.365 27.102 27.518 -2.0743 -0.065472 -0.00028222 NaN 18.146 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 666050 12816 26356 8179 8182 -0.06973512800664139 ENGAGAARQ 9 Unmodified _ENGAGAARQ_ 0 0 0 REV__ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant REV__ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2252502441406 2 437.212298 872.410043 NaN NaN NaN NaN NaN NaN NaN 29.276 1 27.384 26.884 27.884 -1.8928 0 0 0 0.19711 1 4974 4974 2.6312 0 1 + 12817 13049 8180 8183 13031 13031 -0.03126603978671483 ENGEGTSPQY 10 Unmodified _ENGEGTSPQY_ 0 0 0 REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2800903320312 2 541.225268 1080.43598 0.25351 0.00013721 -2.0885 -0.0011304 -1.835 -0.00099317 541.2243731188584 96.346 0.58641 96.346 96.149 96.736 0 31 16 3 0 0 0 0.78938 1 18914 18914 16.149 0 1 2265700 + 12818 13475 8181 8184 13032 13032 -0.1010179931768107 ENGEGTSPQY 10 Unmodified _ENGEGTSPQY_ 0 0 0 REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.280029296875 2 541.225268 1080.43598 NaN NaN NaN NaN NaN NaN NaN 96.477 1 92.243 91.743 92.743 -4.2348 0 0 0 0.22552 1 18420 18420 18.146 4.2403 1 + 12819 13475 8181 8184 13033 13033 -0.1010179931768107 ENGKDDLEY 9 Unmodified _ENGKDDLEY_ 0 0 0 REV__tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1 REV__tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2660522460938 2 541.735468 1081.45638 NaN NaN NaN NaN NaN NaN NaN 87.185 1 83.235 82.735 83.735 -3.9503 0 0 0 0.23508 1 16603 16603 10.824 0 1 + 12820 25332 8182 8185 13034 13034 -0.08108628657896588 ENGLHTEK 8 Unmodified _ENGLHTEK_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 464.1518859863281 2 464.230156 926.445759 0.19751 9.1688E-05 -0.12427 -5.7688E-05 0.07324 3.4E-05 464.23008988620586 32.98 0.38581 30.833 30.655 31.041 -2.1468 17 10 2 0 0 0 0.97173 1 5774 5774 18.135 0 1 892390 + 12821 13287 8183 8186 13035 13035 -0.02040566521668552 ENGLHTEK 8 Unmodified _ENGLHTEK_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.230156 926.445759 0.1721 7.9895E-05 0.032778 1.5216E-05 0.20488 9.5112E-05 464.23020635539626 31.102 0.31934 31.102 30.896 31.215 0 0.18988 -2.3289E-05 NaN 18.135 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1317100 + 12822 13287 8183 8186 -0.02040566521668552 ENGLHTEK 8 Unmodified _ENGLHTEK_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.230156 926.445759 -0.011665 -5.4153E-06 0.3919 0.00018193 0.38024 0.00017652 464.230327627712 33.118 0.3096 30.801 30.593 30.903 -2.3175 -0.11133 0.00031014 NaN 18.135 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 654990 + 12823 13287 8183 8186 -0.02040566521668552 ENGQLLVR 8 Unmodified _ENGQLLVR_ 0 0 0 REV__nc|ENSG00000070159|P26045-3|PTPN3 REV__nc|ENSG00000070159|P26045-3|PTPN3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16461181640625 3 310.178536 927.513779 NaN NaN NaN NaN NaN NaN NaN 11.296 1 11.296 10.796 11.796 0 0 0 0 0.21486 1 1487 1487 0.45834 0 1 + 12824 14251 8184 8187 13036 13036 0.04712303129008433 ENGSLYDY 8 Unmodified _ENGSLYDY_ 0 0 0 ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B ENSG00000138696|ENST00000515059|BMPR1B ENSG00000138696|ENST00000515059|BMPR1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2320251464844 2 480.700897 959.387241 0.029967 1.4405E-05 0.19101 9.1819E-05 0.22098 0.00010622 480.70089683070233 65.879 0.994 62.832 62.478 63.472 -3.047 65 28 3 0 0 0 0.31943 1 12754 12754 53.833 7.8118 1 11976000 12825 4202 8185 8188 13037 13037 -0.09407667886796389 ENHIRTLKA 9 Unmodified _ENHIRTLKA_ 0 0 0 nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128;CEP128|p.I749Ffs*9|1|0.42|ENSG00000100629|chr14:80778013-80778013|T/-|frameshift_variant nc|ENSG00000100629|Q6ZU80-1|CEP128 nc|ENSG00000100629|Q6ZU80-1|CEP128 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2830200195312 2 541.309272 1080.60399 NaN NaN NaN NaN NaN NaN NaN 112.77 1 112.77 112.27 113.27 0 0 0 0 0.23508 1 22179 22179 9.3831 0.63772 1 12826 1999 8186 8189 13038 13038 0.06691352457414723 ENHKLLEP 8 Unmodified _ENHKLLEP_ 0 0 0 REV__OSBPL2|p.L221P|1|0.23|ENSG00000130703|chr20:62279327-62279327|T/C|missense_variant REV__OSBPL2|p.L221P|1|0.23|ENSG00000130703|chr20:62279327-62279327|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26458740234375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 92.232 1 88.137 87.637 88.637 -4.0946 0 0 0 0.22638 1 17570 17570 0.68139 0 1 + 12827 24417 8187 8190 13039 13039 0.02332883409144415 ENHPSVLKY 9 Unmodified _ENHPSVLKY_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7841186523438 2 543.782556 1085.55056 0.79682 0.0004333 2.8318 0.0015399 3.6286 0.0019732 543.7841187953875 106.98 0.20447 102.85 102.7 102.91 -4.135 6 5 2 0 0 0 0.6329 1 20570 20570 10.824 1.4408 1 897890 12828 3299 8188 8191 13040 13040 0.01120554954900399 ENICGIKP 8 Unmodified _ENICGIKP_ 0 0 0 BFSP2|p.A172Ifs*52|1|0.08|ENSG00000170819|chr3:133447340-133447341|-/ATTTGTGGAATTAA|frameshift_variant BFSP2|p.A172Ifs*52|1|0.08|ENSG00000170819|chr3:133447340-133447341|-/ATTTGTGGAATTAA|frameshift_variant BFSP2|p.A172Ifs*52|1|0.08|ENSG00000170819|chr3:133447340-133447341|-/ATTTGTGGAATTAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2289733886719 2 437.228571 872.442588 NaN NaN NaN NaN NaN NaN NaN 85.581 1 81.917 81.417 82.417 -3.6641 0 0 0 0.23182 1 16732 16732 0.25148 0 1 12829 317 8189 8192 13041 13041 0.0012646709997170547 ENIGKKRIL 9 Unmodified _ENIGKKRIL_ 0 0 0 MYBPC2|p.V307I|1|0.36|ENSG00000086967|chr19:50443510-50443510|G/A|missense_variant MYBPC2|p.V307I|1|0.36|ENSG00000086967|chr19:50443510-50443510|G/A|missense_variant MYBPC2|p.V307I|1|0.36|ENSG00000086967|chr19:50443510-50443510|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5613708496094 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 147.38 1 142.35 141.85 142.85 -5.039 0 0 0 0.23508 1 28530 28530 4.5289 2.0304 1 12830 12180 8190 8193 13042 13042 0.1287340001395023 ENILNALS 8 Unmodified _ENILNALS_ 0 0 0 ENSG00000196440|ENST00000423738|ARMCX4 ENSG00000196440|ENST00000423738|ARMCX4 ENSG00000196440|ENST00000423738|ARMCX4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22760009765625 2 437.23745 872.460347 0.42268 0.00018481 -0.46199 -0.000202 -0.039311 -1.7188E-05 437.2371702680386 82.135 0.68401 82.135 81.818 82.502 0 23 18 2 0 0 0 0.70928 1 16060 16060 13.042 0 1 2812200 12831 7267 8191 8194 13043 13043 0.019015056264720442 ENILWLDYKN 10 Unmodified _ENILWLDYKN_ 0 0 0 ENST00000562784.1_1_15:72501984-72509791:-|nuORF;nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM ENST00000562784.1_1_15:72501984-72509791:-|nuORF ENST00000562784.1_1_15:72501984-72509791:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2287292480469 3 436.559194 1306.65575 -0.18328 -8.0014E-05 0.36609 0.00015982 0.1828 7.9805E-05 436.559260593706 85.861 0.61494 82.135 81.865 82.48 -3.7255 37 16 3 0 0 0 0.70283 1 16777 16777 10.899 2.1472 1 1582800 12832 1389 8192 8195 13044 13044 0.014690513606637978 ENILWLDYKN 10 Unmodified _ENILWLDYKN_ 0 0 0 ENST00000562784.1_1_15:72501984-72509791:-|nuORF;nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM ENST00000562784.1_1_15:72501984-72509791:-|nuORF ENST00000562784.1_1_15:72501984-72509791:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2165222167969 3 436.559194 1306.65575 -0.12601 -5.5012E-05 0.3093 0.00013503 0.18329 8.0016E-05 436.5593036719696 85.743 0.59206 82.015 81.752 82.344 -3.7289 36 16 3 0 0 0 0.66283 1 16427 16427 14.957 0.11926 1 3235100 12833 1389 8192 8195 13045 13045 0.014690513606637978 ENILWLDYKN 10 Unmodified _ENILWLDYKN_ 0 0 0 ENST00000562784.1_1_15:72501984-72509791:-|nuORF;nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM ENST00000562784.1_1_15:72501984-72509791:-|nuORF ENST00000562784.1_1_15:72501984-72509791:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 436.559194 1306.65575 0.41951 0.00018314 -0.35659 -0.00015567 0.062917 2.7467E-05 436.5590150059953 82.148 0.68371 82.148 81.784 82.468 0 0.065806 -0.00058014 NaN 14.957 43 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4632100 12834 1389 8192 8195 0.014690513606637978 ENILWLDYKN 10 Unmodified _ENILWLDYKN_ 0 0 0 ENST00000562784.1_1_15:72501984-72509791:-|nuORF;nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM ENST00000562784.1_1_15:72501984-72509791:-|nuORF ENST00000562784.1_1_15:72501984-72509791:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 436.559194 1306.65575 0.20835 9.0957E-05 0.092495 4.038E-05 0.30085 0.00013134 436.893517137445 85.982 0.5276 82.032 81.805 82.332 -3.9503 -0.050627 8.0244E-06 NaN 14.957 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2397700 12835 1389 8192 8195 0.014690513606637978 ENILYHTWFPL 11 Unmodified _ENILYHTWFPL_ 0 0 0 REV__ENSG00000168329|ENST00000399220|CX3CR1 REV__ENSG00000168329|ENST00000399220|CX3CR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7375793457031 3 478.246839 1431.71869 -0.12186 -5.828E-05 -1.7128 -0.00081913 -1.8346 -0.00087741 478.58045778054264 50.045 0.17142 47.164 47.011 47.182 -2.8811 6 4 2 0 0 0 0.96033 1 9458 9458 6.6235 0 1 465950 + 12836 18014 8193 8196 13046 13046 0.020096171487011816 ENINLGKKY 9 Unmodified _ENINLGKKY_ 0 0 0 nc|ENSG00000007944|Q8WY64-2|MYLIP;MYLIP|p.R317Kfs*8|1|0.09|ENSG00000007944|chr6:16145014-16145015|-/A|frameshift_variant;ENSG00000007944|ENST00000356840|MYLIP nc|ENSG00000007944|Q8WY64-2|MYLIP nc|ENSG00000007944|Q8WY64-2|MYLIP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 78.687 1 78.687 78.187 79.187 0 0 0 0 0.23508 1 15313 15313 4.897 1.9018 1 12837 1031 8194 8197 13047 13047 0.0461712798901317 ENINLVDG 8 Unmodified _ENINLVDG_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2203369140625 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 97.431 1 93.197 92.697 93.697 -4.2348 0 0 0 0.18734 1 18612 18612 29.082 0 1 12838 7947 8195 8198 13048 13048 -0.01735371270228825 ENIPVHPHVY 10 Unmodified _ENIPVHPHVY_ 0 0 0 ENST00000519277.5_1_8:74708911-74722861:-|nuORF;ENST00000519255.2_1_8:74708126-74722861:-|nuORF;ENSG00000104343|ENST00000602593|UBE2W;nc|ENSG00000104343|Q96B02-2|UBE2W;nc|ENSG00000104343|Q96B02-3|UBE2W ENST00000519277.5_1_8:74708911-74722861:-|nuORF ENST00000519277.5_1_8:74708911-74722861:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2967529296875 2 602.809105 1203.60366 0.19041 0.00011478 0.21604 0.00013023 0.40645 0.00024501 602.8090801509995 70.33 0.59138 70.33 70.068 70.66 0 32 16 3 0 0 0 0.87854 1 13657 13657 13.906 0 1 3287000 12839 2231 8196 8199 13049 13049 0.009999327375680878 ENIRARRR 8 Unmodified _ENIRARRR_ 0 0 0 REV__HES1|p.L54Efs*15|1|0.25|ENSG00000114315|chr3:194136667-194136668|TC/-|frameshift_variant REV__HES1|p.L54Efs*15|1|0.25|ENSG00000114315|chr3:194136667-194136668|TC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5568542480469 3 357.547846 1069.62171 NaN NaN NaN NaN NaN NaN NaN 108.68 1 104.5 104 105 -4.1826 0 0 0 0.21486 1 20914 20914 9.3831 2.2814 1 + 12840 15367 8197 8200 13050 13050 0.08968112502930126 ENIVMSAGP 9 Unmodified _ENIVMSAGP_ 0 0 0 REV__ENSG00000068654|ENST00000263857|POLR1A REV__ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2312927246094 2 459.223485 916.432418 -0.10594 -4.865E-05 3.4282 0.0015743 3.3223 0.0015257 459.2235523645458 45.978 0.65809 43.111 42.783 43.441 -2.8666 39 18 3 0 0 0 0.54076 1 8310 8310 17.113 0.96379 1 1781700 + 12841 14230 8198 8201 13051 13051 -0.029141406252506385 ENKCEPGP 8 Unmodified _ENKCEPGP_ 0 0 0 ENST00000539713.5_1_12:7024996-7026336:+|nuORF ENST00000539713.5_1_12:7024996-7026336:+|nuORF ENST00000539713.5_1_12:7024996-7026336:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2153625488281 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 68.088 1 64.552 64.052 65.052 -3.5362 0 0 0 0.21486 1 12785 12785 9.3474 0 1 12842 11062 8199 8202 13052 13052 -0.0714728669345277 ENKNNSPKY 9 Unmodified _ENKNNSPKY_ 0 0 0 REV__tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1 REV__tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7684326171875 2 547.26727 1092.51999 0.51663 0.00028273 0.03314 1.8136E-05 0.54977 0.00030087 547.2672384062918 41.242 0.80391 41.242 40.885 41.689 0 57 22 3 0 0 0 0.62102 1 7652 7652 11.64 0.81637 1 4044700 + 12843 25233 8200 8203 13053 13053 -0.022572234301378558 ENKRINKY 8 Unmodified _ENKRINKY_ 0 0 0 TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;ENSG00000047410|ENST00000367478|TPR;nc|ENSG00000047410|P12270-2|TPR;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2752075195312 2 532.795998 1063.57744 0.088566 4.7188E-05 -2.1839 -0.0011636 -2.0954 -0.0011164 532.7956633037843 115.57 0.23933 111.1 110.91 111.15 -4.4726 9 6 2 0 0 0 8448 1 22758 22758 0.12286 0 1 1103100 12844 1215 8201 8204 13054 13054 0.048196635660815446 ENKVSFPEP 9 Unmodified _ENKVSFPEP_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6773681640625 2 523.761289 1045.50803 NaN NaN NaN NaN NaN NaN NaN 117.54 1 112.93 112.43 113.43 -4.6106 0 0 0 0.21469 1 22557 22557 19.257 2.3147 1 + 12845 15567 8202 8205 13055 13055 -0.012908401733284336 ENLEKIQGY 9 Unmodified _ENLEKIQGY_ 0 0 0 REV__ENSG00000096696|ENST00000379802|DSP REV__ENSG00000096696|ENST00000379802|DSP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7666015625 2 547.279846 1092.54514 0.6673 0.0003652 0.80726 0.0004418 1.4746 0.00080699 547.7819615596186 77.782 0.72989 77.782 77.392 78.122 0 42 20 3 0 0 0 0.24263 2 15087 15087;15126 34.932 1.4872 1 3331200 + 12846 14625 8203 8206 13056;13057 13056 0.002568313724395921 ENLEKIQGY 9 Unmodified _ENLEKIQGY_ 0 0 0 REV__ENSG00000096696|ENST00000379802|DSP REV__ENSG00000096696|ENST00000379802|DSP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7822875976562 2 547.279846 1092.54514 0.20581 0.00011263 1.2748 0.00069765 1.4806 0.00081028 547.7822824195247 81.286 0.82834 77.729 77.308 78.136 -3.557 37 23 2 0 0 0 0.07738 2 15893 15893;15908 62.573 2.4988 1 3351400 + 12847 14625 8203 8206 13058;13059 13058 0.002568313724395921 ENLEKIQGY 9 Unmodified _ENLEKIQGY_ 0 0 0 REV__ENSG00000096696|ENST00000379802|DSP REV__ENSG00000096696|ENST00000379802|DSP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7931518554688 2 547.279846 1092.54514 -0.10697 -5.8545E-05 1.4928 0.00081697 1.3858 0.00075843 547.782515376169 81.391 0.73167 77.703 77.349 78.081 -3.6879 35 20 2 0 0 0 0.07738 1 15528 15528 62.573 20.617 1 2930100 + 12848 14625 8203 8206 13060 13060 0.002568313724395921 ENLELVPVEY 10 Unmodified _ENLELVPVEY_ 0 0 0 nc|ENSG00000135407|O75366-2|AVIL;ENST00000549851.5_1_12:58191667-58209405:-|nuORF;ENSG00000135407|ENST00000549994|AVIL;ENST00000548843.1_1_12:58200052-58208006:-|nuORF nc|ENSG00000135407|O75366-2|AVIL nc|ENSG00000135407|O75366-2|AVIL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2841796875 2 602.808436 1203.60232 0.54377 0.00032779 0.24195 0.00014585 0.78572 0.00047364 602.808702169573 74.053 0.58618 70.377 70.07 70.656 -3.6764 29 16 3 0 0 0 0.91149 1 14050 14050 1.4819 0 1 2952900 12849 3925 8204 8207 13061 13061 0.008662538581802437 ENLLTYPPD 9 Unmodified _ENLLTYPPD_ 0 0 0 LRRC1|p.L166P|1|0.49|ENSG00000137269|chr6:53896548-53896548|T/C|missense_variant LRRC1|p.L166P|1|0.49|ENSG00000137269|chr6:53896548-53896548|T/C|missense_variant LRRC1|p.L166P|1|0.49|ENSG00000137269|chr6:53896548-53896548|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 531.5501708984375 2 531.261122 1060.50769 NaN NaN NaN NaN NaN NaN NaN 170.61 1 165.82 165.32 166.32 -4.7898 0 0 0 0.21844 1 34637 34637 18.146 0.011366 1 12850 12087 8205 8208 13062 13062 -0.020142598931897737 ENLNWIRA 8 Unmodified _ENLNWIRA_ 0 0 0 REV__TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant REV__TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.1744079589844 3 339.182169 1014.52468 -0.39014 -0.00013233 -0.31597 -0.00010717 -0.70611 -0.0002395 339.18213847515784 43.017 0.53084 40.298 39.877 40.408 -2.7191 24 14 2 0 0 0 8448 1 8072 8072 6.3914 6.3274 1 1716700 + 12851 14800 8206 8209 13063 13063 0.017997055032765275 ENLNWIRA 8 Unmodified _ENLNWIRA_ 0 0 0 REV__TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant REV__TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 339.182169 1014.52468 -0.22574 -7.6567E-05 -0.73565 -0.00024952 -0.96139 -0.00032609 339.1819013580277 40.215 0.53234 40.215 39.93 40.462 0 -0.047381 -0.00031916 NaN 6.3914 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1014100 + 12852 14800 8206 8209 0.017997055032765275 ENLNWIRA 8 Unmodified _ENLNWIRA_ 0 0 0 REV__TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant REV__TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 339.182169 1014.52468 -0.39014 -0.00013233 -0.31597 -0.00010717 -0.70611 -0.0002395 339.18213847515784 43.017 0.53084 40.298 39.877 40.408 -2.7191 0.035727 0.00010789 NaN 6.3914 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1716700 + 12853 14800 8206 8209 0.017997055032765275 ENLNWIRA 8 Unmodified _ENLNWIRA_ 0 0 0 REV__TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant REV__TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 339.182169 1014.52468 -0.048195 -1.6347E-05 -0.57466 -0.00019491 -0.62285 -0.00021126 339.18199139545925 42.924 0.58652 40.273 39.92 40.507 -2.651 0.010673 -0.00015534 NaN 6.3914 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1370000 + 12854 14800 8206 8209 0.017997055032765275 ENLNWIRA 8 Unmodified _ENLNWIRA_ 0 0 0 REV__TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant REV__TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 339.182169 1014.52468 -0.69798 -0.00023674 -0.071174 -2.4141E-05 -0.76915 -0.00026088 339.1821501333389 42.869 0.6215 40.263 39.863 40.484 -2.606 0.00098137 0.00035697 NaN 6.3914 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1409400 + 12855 14800 8206 8209 0.017997055032765275 ENLRGIHEN 9 Unmodified _ENLRGIHEN_ 0 0 0 ENST00000472637.5_1_3:112724385-112732818:-|nuORF;nc|ENSG00000163608|Q6NW34-2|NEPRO;ENSG00000163608|ENST00000314400|NEPRO;ENST00000474311.1_1_3:112724385-112727343:-|nuORF ENST00000472637.5_1_3:112724385-112732818:-|nuORF ENST00000472637.5_1_3:112724385-112732818:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.274169921875 2 541.272887 1080.53122 NaN NaN NaN NaN NaN NaN NaN 120.97 1 116.44 115.94 116.94 -4.5221 0 0 0 0.23508 1 23847 23847 13.042 2.8591 1 12856 5445 8207 8210 13064 13064 -0.005824013360097524 ENLRISKSSF 10 Unmodified _ENLRISKSSF_ 0 0 0 ENSG00000214274|ENST00000397990|ANG ENSG00000214274|ENST00000397990|ANG ENSG00000214274|ENST00000397990|ANG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2762451171875 2 590.81967 1179.62479 0.41919 0.00024767 -3.394 -0.0020052 -2.9748 -0.0017576 591.3189130923485 119.02 0.2818 114.61 114.52 114.81 -4.4088 12 7 2 0 0 0 0.84217 1 22909 22909 20.415 8.7742 1 1588400 12857 7723 8208 8211 13065 13065 0.04215898046413713 ENLRVHRY 8 Unmodified _ENLRVHRY_ 0 0 0 REV__SLC12A1|p.Q1036H|1|0.33|ENSG00000074803|chr15:48301326-48301326|A/C|missense_variant REV__SLC12A1|p.Q1036H|1|0.33|ENSG00000074803|chr15:48301326-48301326|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7952270507812 2 543.793789 1085.57303 NaN NaN NaN NaN NaN NaN NaN 141.52 1 136.65 136.15 137.15 -4.8678 0 0 0 0.21486 1 27309 27309 9.3474 1.4373 1 + 12858 24622 8209 8212 13066 13066 0.03366199143192716 ENLRVKKEY 9 Unmodified _ENLRVKKEY_ 0 0 0 REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2744750976562 2 589.830037 1177.64552 NaN NaN NaN NaN NaN NaN NaN 55.122 1 51.987 51.487 52.487 -3.1352 0 0 0 0.21844 1 10180 10180 18.146 2.2992 1 + 12859 12998 8210 8213 13067 13067 0.06380488426111697 ENLTIWKY 8 Unmodified _ENLTIWKY_ 0 0 0 HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|81|2|sense HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|81|2|sense HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|81|2|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2814331054688 2 533.782025 1065.5495 0.28326 0.0001512 0.15094 8.0567E-05 0.43419 0.00023176 533.7819862350719 111.72 1.0103 107.23 106.89 107.9 -4.4915 76 28 4 0 0 0 0.96386 1 21541 21541 10.074 2.7847 1 24958000 12860 11888 8211 8214 13068 13068 0.01934340586012695 ENLYAGKKY 9 Unmodified _ENLYAGKKY_ 0 0 0 CLSPN|p.N97Kfs*15|1|0.46|ENSG00000092853|chr1:35764557-35764558|-/T|frameshift_variant CLSPN|p.N97Kfs*15|1|0.46|ENSG00000092853|chr1:35764557-35764558|-/T|frameshift_variant CLSPN|p.N97Kfs*15|1|0.46|ENSG00000092853|chr1:35764557-35764558|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7926025390625 2 543.284931 1084.55531 0.29404 0.00015975 0.18195 9.885E-05 0.47599 0.0002586 543.2850683523782 62.467 0.46004 59.506 59.214 59.674 -2.9614 25 12 3 0 0 0 0.52396 1 11995 11995 18.146 5.1039 1 2104500 12861 585 8212 8215 13069 13069 0.016414390976706272 ENMWYMDY 8 Unmodified _ENMWYMDY_ 0 0 0 REV__nc|ENSG00000121644|Q9BSY9-2|DESI2 REV__nc|ENSG00000121644|Q9BSY9-2|DESI2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.316162109375 2 576.21226 1150.40997 0.27309 0.00015736 -0.30966 -0.00017843 -0.036576 -2.1076E-05 576.2121557255402 85.911 0.70627 85.911 85.575 86.281 0 46 19 3 0 0 0 0.71273 1 16716 16716 12.532 3.7861 1 7279300 + 12862 15662 8213 8216 13070 13070 -0.15922108085192122 ENNFKHVVT 9 Unmodified _ENNFKHVVT_ 0 0 0 nc|ENSG00000001617|Q13275-2|SEMA3F;ENSG00000001617|ENST00000002829|SEMA3F nc|ENSG00000001617|Q13275-2|SEMA3F nc|ENSG00000001617|Q13275-2|SEMA3F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7947387695312 2 544.28018 1086.54581 0.045458 2.4742E-05 0.525 0.00028575 0.57046 0.00031049 544.2803169187608 58.301 0.68656 58.301 57.894 58.581 0 47 19 3 0 0 0 0.80521 1 11183 11183 10.824 10.824 1 7682300 12863 957 8214 8217 13071 13071 0.005996708121301708 ENNFKHVVT 9 Unmodified _ENNFKHVVT_ 0 0 0 nc|ENSG00000001617|Q13275-2|SEMA3F;ENSG00000001617|ENST00000002829|SEMA3F nc|ENSG00000001617|Q13275-2|SEMA3F nc|ENSG00000001617|Q13275-2|SEMA3F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.791748046875 2 544.28018 1086.54581 0.12388 6.7426E-05 0.24122 0.00013129 0.3651 0.00019872 544.2802448661683 61.477 0.77101 58.108 57.691 58.462 -3.3694 60 21 4 0 0 0 0.80521 1 11505 11505 10.824 10.824 1 9513000 12864 957 8214 8217 13072 13072 0.005996708121301708 ENNFSRKSL 9 Unmodified _ENNFSRKSL_ 0 0 0 tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1 tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1 tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7827758789062 2 547.783087 1093.55162 0.049299 2.7005E-05 -1.5948 -0.00087359 -1.5455 -0.00084658 547.7825654468303 81.469 0.76174 77.63 77.368 78.13 -3.8392 40 18 3 0 0 0 0.30618 1 15498 15498 31.268 2.7738 1 4405000 12865 26206 8215 8218 13073 13073 0.008587693238041538 ENNFYSPNFF 10 Unmodified _ENNFYSPNFF_ 0 0 0 tr|U7SL56|U7SL56_FUSNUtriphosphoribosyl-dephospho-CoAsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01989PE=4SV=1 tr|U7SL56|U7SL56_FUSNUtriphosphoribosyl-dephospho-CoAsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01989PE=4SV=1 tr|U7SL56|U7SL56_FUSNUtriphosphoribosyl-dephospho-CoAsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01989PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.3259582519531 3 426.852377 1277.5353 -0.0073701 -3.1459E-06 -0.64436 -0.00027505 -0.65173 -0.00027819 426.85206526821474 49.19 0.37984 46.191 46.033 46.413 -2.999 17 10 2 0 0 0 0.91149 1 9023 9023 0.56317 0.44031 1 891280 12866 25977 8216 8219 13074 13074 -0.09236356632959541 ENNFYSPNFF 10 Unmodified _ENNFYSPNFF_ 0 0 0 tr|U7SL56|U7SL56_FUSNUtriphosphoribosyl-dephospho-CoAsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01989PE=4SV=1 tr|U7SL56|U7SL56_FUSNUtriphosphoribosyl-dephospho-CoAsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01989PE=4SV=1 tr|U7SL56|U7SL56_FUSNUtriphosphoribosyl-dephospho-CoAsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01989PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 426.852377 1277.5353 -0.2533 -0.00010812 -0.066085 -2.8209E-05 -0.31938 -0.00013633 426.8519821423059 49.128 0.31696 46.247 46.132 46.449 -2.8811 0.027806 0.00062478 NaN 0.56317 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 551320 12867 25977 8216 8219 -0.09236356632959541 ENNGQESP 8 Unmodified _ENNGQESP_ 0 0 0 REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2152099609375 2 437.680496 873.346439 0.3093 0.00013537 1.5339 0.00067135 1.8432 0.00080672 437.6812090682082 29.733 0.55383 27.84 27.547 28.101 -1.8928 24 15 2 0 0 0 1.0191 1 5030 5030 8.5933 0 1 504790 + 12868 13013 8217 8220 13075 13075 -0.0953000920641216 ENNHKVLVF 9 Unmodified _ENNHKVLVF_ 0 0 0 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 550.3448486328125 2 550.298373 1098.58219 NaN NaN NaN NaN NaN NaN NaN 171.26 1 166.47 165.97 166.97 -4.7898 0 0 0 0.19684 1 34810 34810 1.2148 0.80657 1 12869 25984 8218 8221 13076 13076 0.03684547708849095 ENNIHLMHS 9 Unmodified _ENNIHLMHS_ 0 0 0 tr|U7SL15|U7SL15_FUSNUCopper-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02035PE=3SV=1 tr|U7SL15|U7SL15_FUSNUCopper-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02035PE=3SV=1 tr|U7SL15|U7SL15_FUSNUCopper-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02035PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7698974609375 2 547.756015 1093.49748 0.022872 1.2528E-05 0.24574 0.0001346 0.26861 0.00014713 547.7560086537835 46.926 0.48541 43.984 43.754 44.24 -2.9421 20 13 2 0 0 0 0.81359 1 8542 8542 11.495 7.5503 1 2134000 12870 25975 8219 8222 13077 13077 -0.045531460994197914 ENNMDDFY 8 Unmodified _ENNMDDFY_ 0 0 0 tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6961669921875 2 524.189839 1046.36513 -0.42787 -0.00022428 2.5802 0.0013525 2.1523 0.0011282 524.1938874045328 49.096 1.6376 46.097 45.3 46.938 -2.999 117 43 4 0 0 0 0.69887 1 8852 8852 14.582 1.0738 1 2014600 12871 26191 8220 8223 13078 13078 -0.15620215626859135 ENNNSLHS 8 Unmodified _ENNNSLHS_ 0 0 0 REV__nc|ENSG00000162594|Q5VWK5-7|IL23R REV__nc|ENSG00000162594|Q5VWK5-7|IL23R MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2382507324219 2 457.701763 913.388973 0.63738 0.00029173 -0.34468 -0.00015776 0.29271 0.00013397 457.70162838207926 103.26 0.64505 103.26 102.86 103.51 0 30 18 2 0 0 0 0.99312 1 20275 20275 14.838 6.245 1 1206200 + 12872 17506 8221 8224 13079 13079 -0.07118614078194696 ENNPAQSY 8 Unmodified _ENNPAQSY_ 0 0 0 PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3;nc|ENSG00000070159|P26045-3|PTPN3 PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5340881347656 2 461.698689 921.382825 0.43592 0.00020126 -0.484 -0.00022346 -0.048079 -2.2198E-05 461.6984565896321 99.356 0.59514 99.356 99.058 99.653 0 22 16 2 0 0 0 1.0191 1 19484 19484 4.756 2.1785 1 1654800 12873 1426 8222 8225 13080 13080 -0.08101132309707282 ENNPAQSY 8 Unmodified _ENNPAQSY_ 0 0 0 PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3;nc|ENSG00000070159|P26045-3|PTPN3 PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.698689 921.382825 -0.20063 -9.2632E-05 -0.16491 -7.6137E-05 -0.36554 -0.00016877 461.69874954698054 103.58 0.54363 99.359 99.111 99.655 -4.2183 0.0014958 0.00021596 NaN 4.756 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 872090 12874 1426 8222 8225 -0.08101132309707282 ENPALRVNGI 10 Unmodified _ENPALRVNGI_ 0 0 0 ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000466762.1_1_3:137982955-138014731:+|nuORF ENST00000460495.5_1_3:137956301-138014731:+|nuORF ENST00000460495.5_1_3:137956301-138014731:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2787475585938 2 541.80128 1081.58801 0.097973 5.3082E-05 0.33808 0.00018317 0.43605 0.00023625 541.800932784749 49.689 0.45443 46.808 46.625 47.079 -2.8811 16 12 2 0 0 0 0.82238 1 9444 9444 12.241 0 1 1112700 12875 2774 8223 8226 13081 13081 0.050476462205324424 ENPDSSDKA 9 Unmodified _ENPDSSDKA_ 0 0 0 REV__nc|ENSG00000171453|O15160-2|POLR1C REV__nc|ENSG00000171453|O15160-2|POLR1C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2412109375 2 481.706711 961.398869 NaN NaN NaN NaN NaN NaN NaN 161.95 1 157.16 156.66 157.66 -4.7898 0 0 0 0.19656 1 32210 32210 0.073264 0 1 + 12876 18226 8224 8227 13082 13082 -0.08337470863466478 ENPKANLPKI 10 Unmodified _ENPKANLPKI_ 0 0 0 tr|U7T201|U7T201_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00705PE=4SV=1 tr|U7T201|U7T201_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00705PE=4SV=1 tr|U7T201|U7T201_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00705PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2205810546875 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 115.05 1 110.57 110.07 111.07 -4.4726 0 0 0 0.22588 1 22675 22675 3.3196 0.3244 1 12877 26335 8225 8228 13083 13083 0.08329389914410967 ENPKNTDTY 9 Unmodified _ENPKNTDTY_ 0 0 0 PPP1R3A|p.N476Kfs*4|1|0.28|ENSG00000154415|chr7:113879664-113879664|A/-|frameshift_variant;PPP1R3A|p.K469Nfs*11|1|0.33|ENSG00000154415|chr7:113879685-113879685|T/-|frameshift_variant;PPP1R3A|p.R560Kfs*46|1|0.14|ENSG00000154415|chr7:113879413-113879414|-/T|frameshift_variant;PPP1R3A|p.K861Nfs*74|1|0.35|ENSG00000154415|chr7:113878509-113878509|T/-|frameshift_variant;ENSG00000154415|ENST00000284601|PPP1R3A PPP1R3A|p.N476Kfs*4|1|0.28|ENSG00000154415|chr7:113879664-113879664|A/-|frameshift_variant PPP1R3A|p.N476Kfs*4|1|0.28|ENSG00000154415|chr7:113879664-113879664|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2637329101562 2 541.24346 1080.47237 NaN NaN NaN NaN NaN NaN NaN 70.547 1 67.298 66.798 67.798 -3.2492 0 0 0 0.14794 1 13729 13729 39.95 12.321 1 12878 5011 8226 8229 13084 13084 -0.0646492242099157 ENPWNFSTSY 10 Unmodified _ENPWNFSTSY_ 0 0 0 ENST00000519722.1_1_8:30107100-30107226:-|nuORF ENST00000519722.1_1_8:30107100-30107226:-|nuORF ENST00000519722.1_1_8:30107100-30107226:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7651977539062 2 622.76456 1243.51457 NaN NaN NaN NaN NaN NaN NaN 38.888 1 36.483 35.983 36.983 -2.4049 0 0 0 0.22588 1 6930 6930 5.7319 1.4026 1 12879 10823 8227 8230 13085 13085 -0.09744947012609373 ENQDYVPG 8 Unmodified _ENQDYVPG_ 0 0 0 ENST00000485535.5_1_3:48445895-48454598:-|nuORF;nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1 ENST00000485535.5_1_3:48445895-48454598:-|nuORF ENST00000485535.5_1_3:48445895-48454598:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5398254394531 2 461.201064 920.387576 NaN NaN NaN NaN NaN NaN NaN 29.015 1 27.059 26.559 27.559 -1.9561 0 0 0 0.21486 1 5208 5208 7.9102 2.6795 1 12880 5498 8228 8231 13086 13086 -0.07580248166948422 ENQGKRQAL 9 Unmodified _ENQGKRQAL_ 0 0 0 ENST00000401880.1_1_6:104465575-104466139:-|nuORF ENST00000401880.1_1_6:104465575-104466139:-|nuORF ENST00000401880.1_1_6:104465575-104466139:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2822265625 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 92.128 1 88.32 87.82 88.82 -3.8083 0 0 0 0.23508 1 17648 17648 11.64 0.81637 1 12881 9513 8229 8232 13087 13087 0.032381890436681715 ENQKWCAMM 9 Unmodified _ENQKWCAMM_ 0 0 0 REV__ENSG00000172586|ENST00000372833|CHCHD1 REV__ENSG00000172586|ENST00000372833|CHCHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2103576660156 3 380.826012 1139.45621 -0.014326 -5.4559E-06 -0.0087584 -3.3354E-06 -0.023085 -8.7913E-06 380.825921706532 109.13 0.70387 104.95 104.63 105.33 -4.1826 38 19 3 0 0 0 0.6226 1 21021 21021 0.40827 0.34428 1 1870200 + 12882 18296 8230 8233 13088 13088 -0.1079436645475198 ENQKWCAMM 9 Unmodified _ENQKWCAMM_ 0 0 0 REV__ENSG00000172586|ENST00000372833|CHCHD1 REV__ENSG00000172586|ENST00000372833|CHCHD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.826012 1139.45621 -0.67701 -0.00025782 0.49332 0.00018787 -0.18369 -6.9955E-05 380.82616195677144 109.3 0.56551 104.92 104.57 105.14 -4.3776 -0.04615 0.00053404 NaN 0.40827 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1606200 + 12883 18296 8230 8233 -0.1079436645475198 ENQKWCAMM 9 Unmodified _ENQKWCAMM_ 0 0 0 REV__ENSG00000172586|ENST00000372833|CHCHD1 REV__ENSG00000172586|ENST00000372833|CHCHD1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.826012 1139.45621 -0.17575 -6.693E-05 -0.12595 -4.7965E-05 -0.3017 -0.0001149 380.8259059626762 109.36 0.73219 104.91 104.46 105.2 -4.4518 -0.062727 -0.00017346 NaN 0.40827 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2018800 + 12884 18296 8230 8233 -0.1079436645475198 ENQPHKKY 8 Unmodified _ENQPHKKY_ 0 0 0 ABL2|p.E684K|1|0.19|ENSG00000143322|chr1:179109217-179109217|C/T|missense_variant;ABL2|p.K836Nfs*34|2|0.23|ENSG00000143322|chr1:179108759-179108759|T/-|frameshift_variant;nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2 ABL2|p.E684K|1|0.19|ENSG00000143322|chr1:179109217-179109217|C/T|missense_variant ABL2|p.E684K|1|0.19|ENSG00000143322|chr1:179109217-179109217|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2655029296875 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 87.662 1 83.869 83.369 84.369 -3.7926 0 0 0 0.21486 1 17143 17143 8.5933 1.8701 1 12885 24 8231 8234 13089 13089 3.401640651645721E-05 ENQPLDDIC 9 Unmodified _ENQPLDDIC_ 0 0 0 nc|ENSG00000074855|Q9HCE9-2|ANO8;ENSG00000074855|ENST00000159087|ANO8;ANO8|p.T315Rfs*45|1|0.61|ENSG00000074855|chr19:17330879-17330879|C/-|frameshift_variant;ANO8|p.L363Cfs*24|1|0.57|ENSG00000074855|chr19:17330411-17330411|G/-|frameshift_variant nc|ENSG00000074855|Q9HCE9-2|ANO8 nc|ENSG00000074855|Q9HCE9-2|ANO8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6796264648438 2 523.726589 1045.43863 NaN NaN NaN NaN NaN NaN NaN 83.76 1 80.062 79.562 80.562 -3.6985 0 0 0 0.23508 1 15995 15995 12.241 1.4167 1 12886 1505 8232 8235 13090 13090 -0.08227667184405618 ENQRLKVPS 9 Unmodified _ENQRLKVPS_ 0 0 0 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.55364990234375 3 357.536612 1069.58801 -0.05373 -1.9211E-05 0.060483 2.1625E-05 0.0067522 2.4142E-06 357.53659166986324 41.75 1.0564 39.099 38.585 39.641 -2.651 98 29 4 0 0 0 0.74911 1 7533 7533 19.626 1.2529 1 25918000 12887 3021 8233 8236 13091 13091 0.05599646220525756 ENQRLKVPS 9 Unmodified _ENQRLKVPS_ 0 0 0 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.536612 1069.58801 -0.43343 -0.00015497 0.54869 0.00019618 0.11526 4.1211E-05 357.5367354285471 41.845 0.96273 39.21 38.71 39.673 -2.6348 0.032526 0.00019696 NaN 19.626 91 27 4 NaN NaN NaN NaN 0 NaN NaN 0 34228000 12888 3021 8233 8236 0.05599646220525756 ENQRLKVPS 9 Unmodified _ENQRLKVPS_ 0 0 0 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.536612 1069.58801 -0.64783 -0.00023162 0.69853 0.00024975 0.050703 1.8128E-05 357.53683645919483 41.689 1.1306 39.083 38.519 39.65 -2.606 -0.094374 0.00035768 NaN 19.626 98 31 4 NaN NaN NaN NaN 0 NaN NaN 0 21997000 12889 3021 8233 8236 0.05599646220525756 ENRCRRRP 8 Unmodified _ENRCRRRP_ 0 0 0 ENST00000542438.1_1_12:120972159-120972757:+|nuORF ENST00000542438.1_1_12:120972159-120972757:+|nuORF ENST00000542438.1_1_12:120972159-120972757:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7886352539062 2 543.788515 1085.56248 NaN NaN NaN NaN NaN NaN NaN 145.87 1 140.87 140.37 141.37 -5 0 0 0 0.23182 1 28217 28217 6.1918 1.4759 1 12890 11087 8234 8237 13092 13092 0.023118932170973494 ENRCTQTEI 9 Unmodified _ENRCTQTEI_ 0 0 0 REV__tr|U7STF3|U7STF3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01388PE=4SV=1 REV__tr|U7STF3|U7STF3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01388PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7816162109375 2 547.250763 1092.48697 0.10645 5.8257E-05 -1.6954 -0.00092779 -1.5889 -0.00086954 547.2496678549921 92.95 0.58281 92.95 92.643 93.226 0 29 16 2 0 0 0 0.74655 1 18157 18157 6.7232 0 1 2855600 + 12891 25103 8235 8238 13093 13093 -0.055571735445028025 ENRKKPAH 8 Unmodified _ENRKKPAH_ 0 0 0 REV__ENST00000416599.5_1_13:52760906-52763865:-|nuORF REV__ENST00000416599.5_1_13:52760906-52763865:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2740173339844 2 490.275232 978.535912 NaN NaN NaN NaN NaN NaN NaN 42.316 1 39.596 39.096 40.096 -2.7191 0 0 0 0.21486 1 7912 7912 6.7232 0.36906 1 + 12892 21467 8236 8239 13094 13094 0.04578527597413995 ENRNKDTIY 9 Unmodified _ENRNKDTIY_ 0 0 0 REV__ELMO1|p.E63D|1|0.29|ENSG00000155849|chr7:37314853-37314853|T/A|missense_variant REV__ELMO1|p.E63D|1|0.29|ENSG00000155849|chr7:37314853-37314853|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3357543945312 2 576.785827 1151.5571 NaN NaN NaN NaN NaN NaN NaN 50.809 1 47.758 47.258 48.258 -3.0517 0 0 0 0.23508 1 9346 9346 7.9102 0 1 + 12893 13803 8237 8240 13095 13095 -0.012615518843858808 ENRPFMEY 8 Unmodified _ENRPFMEY_ 0 0 0 REV__tr|U7SP46|U7SP46_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01722PE=3SV=1 REV__tr|U7SP46|U7SP46_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01722PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7952270507812 2 543.239667 1084.46478 0.36017 0.00019566 2.588 0.0014059 2.9482 0.0016016 543.7428378086341 141.44 0.46046 136.58 136.32 136.78 -4.8678 19 12 3 0 0 0 0.9455 1 27309 27309 16.942 2.104 1 1956900 + 12894 24997 8238 8241 13096 13096 -0.07407353222265556 ENRPSLFG 8 Unmodified _ENRPSLFG_ 0 0 0 USP6|p.L931Pfs*6|1|0.06|ENSG00000129204|chr17:5155567-5155568|CA/-|frameshift_variant;USP6|p.E983Gfs*34|1|0.12|ENSG00000129204|chr17:5162911-5162912|-/G|frameshift_variant;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;USP6|p.R1206Gfs*38|1|0.11|ENSG00000129204|chr17:5170574-5170574|G/-|frameshift_variant;ENSG00000129204|ENST00000574788|USP6 USP6|p.L931Pfs*6|1|0.06|ENSG00000129204|chr17:5155567-5155568|CA/-|frameshift_variant USP6|p.L931Pfs*6|1|0.06|ENSG00000129204|chr17:5155567-5155568|CA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2353210449219 2 460.235242 918.45593 -0.080304 -3.6959E-05 0.34312 0.00015792 0.26282 0.00012096 460.23538480978965 44.307 0.83736 41.56 41.08 41.917 -2.7475 41 23 2 0 0 0 0.49114 1 8002 8002 28.487 1.6032 1 1502300 12895 3559 8239 8242 13097 13097 -0.006559587964147795 ENRRREWKERY 11 Unmodified _ENRRREWKERY_ 0 0 0 ENST00000505524.1_1_5:36108630-36114563:-|nuORF;ENSG00000164187|ENST00000296603|LMBRD2 ENST00000505524.1_1_5:36108630-36114563:-|nuORF ENST00000505524.1_1_5:36108630-36114563:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2796020507812 3 541.281716 1620.82332 NaN NaN NaN NaN NaN NaN NaN 94.88 1 90.689 90.189 91.189 -4.1911 0 0 0 0.22632 1 18106 18106 1.4551 0.94916 1 12896 5522 8240 8243 13098 13098 0.03774131677960213 ENRVVPGP 8 Unmodified _ENRVVPGP_ 0 0 0 REV__ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant REV__ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 433.8888244628906 2 434.237784 866.461016 NaN NaN NaN NaN NaN NaN NaN 40.574 1 40.574 40.074 41.074 0 0 0 0 0.21486 1 7548 7548 9.3474 0 1 + 12897 13813 8241 8244 13099 13099 0.02244345066196729 ENSDFVSL 8 Unmodified _ENSDFVSL_ 0 0 0 REV__TBC1D8B|p.V302Kfs*5|1|0.05|ENSG00000133138|chrX:106826105-106826106|-/AAAATGG|frameshift_variant REV__TBC1D8B|p.V302Kfs*5|1|0.05|ENSG00000133138|chrX:106826105-106826106|-/AAAATGG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.4158935546875 1 910.415253 909.407977 0.38702 0.00035235 0.10931 9.9514E-05 0.49633 0.00045186 910.4152351118076 99.683 0.72674 95.727 95.376 96.103 -3.9564 45 20 3 0 0 0 0.35341 1 19218 19218 34.402 0.29928 1 8580500 + 12898 16160 8242 8245 13100 13100 -0.050350775071365206 ENSGYFQQL 9 Unmodified _ENSGYFQQL_ 0 0 0 ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B ENST00000469698.5_1_17:39981777-39991902:-|nuORF ENST00000469698.5_1_17:39981777-39991902:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7827758789062 2 543.248546 1084.48254 0.23943 0.00013007 -0.58066 -0.00031544 -0.34123 -0.00018537 543.2481303411867 90.611 0.58537 86.833 86.609 87.194 -3.7779 28 16 2 0 0 0 0.76271 1 17299 17299 10.074 2.1638 1 1447900 12899 4392 8243 8246 13101 13101 -0.056323146957538484 ENSKMEQSNL 10 Unmodified _ENSKMEQSNL_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-3|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2526245117188 2 590.269152 1178.52375 NaN NaN NaN NaN NaN NaN NaN 95.532 1 95.532 95.032 96.032 0 0 0 0 0.22588 1 18716 18716 9.3831 0.63772 1 12900 3073 8244 8247 13102 13102 -0.058369217185600064 ENSLKSAPL 9 Unmodified _ENSLKSAPL_ 0 0 0 REV__ENST00000393630.7_1_12:62938679-62938739:+|nuORF REV__ENST00000393630.7_1_12:62938679-62938739:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78778076171875 2 479.763832 957.513111 0.31321 0.00015027 0.44197 0.00021204 0.75517 0.00036231 479.7641536101503 47.531 1.4721 47.531 46.946 48.418 0 131 41 5 0 0 0 0.28819 1 8989 8989 32.305 6.9062 1 151620000 + 12901 21238 8245 8248 13103 13103 0.032654636892857525 ENSRDSPD 8 Unmodified _ENSRDSPD_ 0 0 0 nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2388916015625 2 460.191228 918.367903 0.0036905 1.6984E-06 -1.1661 -0.00053662 -1.1624 -0.00053492 460.1907495386254 53.198 0.91446 50.111 49.726 50.64 -3.0876 38 25 2 0 0 0 1.0191 1 9818 9818 8.5933 8.5933 1 1597900 12902 4740 8246 8249 13104 13104 -0.09454624177703863 ENSRSAWL 8 Unmodified _ENSRSAWL_ 0 0 0 ENSG00000112902|ENST00000382496|SEMA5A ENSG00000112902|ENST00000382496|SEMA5A ENSG00000112902|ENST00000382496|SEMA5A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23663330078125 2 481.738148 961.461744 -0.11592 -5.5843E-05 -0.11303 -5.4452E-05 -0.22895 -0.00011029 481.73810746486083 108.96 0.58752 104.5 104.29 104.88 -4.4518 22 16 2 0 0 0 0.95515 1 20891 20891 15.847 6.4997 1 1457400 12903 2716 8247 8250 13105 13105 -0.020528602847662114 ENSRVIYSLA 10 Unmodified _ENSRVIYSLA_ 0 0 0 nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9;ENSG00000261934|ENST00000573521|PCDHGA9 nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9 nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3313598632812 2 576.306395 1150.59824 0.076966 4.4356E-05 -0.10694 -6.1628E-05 -0.02997 -1.7272E-05 576.3064531350261 44.361 1.7805 41.595 41.219 43 -2.7661 163 50 6 0 0 0 0.66827 1 8302 8302 14.405 1.3629 1 454520000 12904 7963 8248 8251 13106 13106 0.02896209155096585 ENSSSIFPY 9 Unmodified _ENSSSIFPY_ 0 0 0 ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant;ARAP2|p.N1365Ifs*21|1|0.42|ENSG00000047365|chr4:36114232-36114232|T/-|frameshift_variant;ENSG00000047365|ENST00000303965|ARAP2;ENST00000508066.1_1_4:36162071-36231213:-|nuORF;ARAP2|p.L915Tfs*3|1|0.42|ENSG00000047365|chr4:36158739-36158740|-/T|frameshift_variant ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2613525390625 2 522.237647 1042.46074 -0.4894 -0.00025558 0.76327 0.00039861 0.27387 0.00014302 522.2376577409882 93.732 0.47507 89.589 89.345 89.82 -4.1435 20 13 3 0 0 0 0.55979 2 17868 17868;17905 15.847 1.2655 1 1263400 12905 191 8249 8252 13107;13108 13107 -0.05879119444330172 ENTAHGARPGA 11 Unmodified _ENTAHGARPGA_ 0 0 0 ENST00000357060.7_2_10:105990583-105992116:-|nuORF ENST00000357060.7_2_10:105990583-105992116:-|nuORF ENST00000357060.7_2_10:105990583-105992116:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2650756835938 2 540.762686 1079.51082 0.40263 0.00021773 -0.64436 -0.00034845 -0.24173 -0.00013072 541.2631961381906 74.346 1.4662 74.346 73.944 75.41 0 94 41 3 0 0 0 0.5544 1 14521 14521 20.415 2.2796 1 3902000 12906 8975 8250 8253 13109 13109 -0.02575571995816972 ENTEDIEEV 9 Unmodified _ENTEDIEEV_ 0 0 0 LMBRD1|p.R234C|1|0.25|ENSG00000168216|chr6:69719018-69719018|G/A|missense_variant;LMBRD1|p.E245Q|1|0.36|ENSG00000168216|chr6:69718985-69718985|C/G|missense_variant;nc|ENSG00000168216|Q9NUN5-4|LMBRD1;nc|ENSG00000168216|Q9NUN5-2|LMBRD1;nc|ENSG00000168216|Q9NUN5-3|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1 LMBRD1|p.R234C|1|0.25|ENSG00000168216|chr6:69719018-69719018|G/A|missense_variant LMBRD1|p.R234C|1|0.25|ENSG00000168216|chr6:69719018-69719018|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 3 359.824264 1076.45096 NaN NaN NaN NaN NaN NaN NaN 159.87 1 154.62 154.12 155.12 -5.2526 0 0 0 0.23508 1 31021 31021 2.4985 0 1 12907 5887 8251 8254 13110 13110 -0.08420352240386819 ENTEKTEQQP 10 Unmodified _ENTEKTEQQP_ 0 0 0 nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1 nc|ENSG00000120690|P32519-2|ELF1 nc|ENSG00000120690|P32519-2|ELF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.277099609375 2 602.278032 1202.54151 NaN NaN NaN NaN NaN NaN NaN 71.63 1 68.002 67.502 68.502 -3.6275 0 0 0 0.22588 1 13512 13512 7.1017 0.37856 1 12908 3146 8252 8255 13111 13111 -0.05165883192103138 ENTHRYINVNL 11 Unmodified _ENTHRYINVNL_ 0 0 0 REV__ENSG00000147246|ENST00000276198|HTR2C REV__ENSG00000147246|ENST00000276198|HTR2C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2243957519531 3 458.237114 1371.68951 NaN NaN NaN NaN NaN NaN NaN 61.989 1 58.749 58.249 59.249 -3.2395 0 0 0 0.22632 1 11614 11614 0.172 0.14059 1 + 12909 16929 8253 8256 13112 13112 0.018534728524400634 ENTILVEP 8 Unmodified _ENTILVEP_ 0 0 0 REV__ENSG00000198553|ENST00000312942|KCNRG REV__ENSG00000198553|ENST00000312942|KCNRG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2372131347656 2 457.745108 913.475663 0.11144 5.101E-05 0.1289 5.9002E-05 0.24034 0.00011001 457.7450992069584 118.16 1.1132 113.66 112.89 114.01 -4.502 54 31 2 0 0 0 8448 1 23189 23189 0.68139 0 1 2864000 + 12910 19420 8254 8257 13113 13113 0.015463724236724374 ENTILVEP 8 Unmodified _ENTILVEP_ 0 0 0 REV__ENSG00000198553|ENST00000312942|KCNRG REV__ENSG00000198553|ENST00000312942|KCNRG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 457.7665710449219 2 457.745108 913.475663 0.43045 0.00019704 -0.20255 -9.2716E-05 0.2279 0.00010432 457.74495620288366 118.13 1.1421 113.72 112.96 114.1 -4.4088 55 31 2 0 0 0 8448 1 22594 22594 0.063987 0 1 1818400 + 12911 19420 8254 8257 13114 13114 0.015463724236724374 ENTISAMAAA 10 Unmodified _ENTISAMAAA_ 0 0 0 nc|ENSG00000065150|O00410-3|IPO5 nc|ENSG00000065150|O00410-3|IPO5 nc|ENSG00000065150|O00410-3|IPO5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2662048339844 2 489.731674 977.448796 0.32747 0.00016037 -1.1849 -0.00058028 -0.85742 -0.00041991 489.7326909659514 93.611 0.13762 89.467 89.38 89.517 -4.1435 5 3 2 0 0 0 0.86261 1 17849 17849 3.5965 0 1 292840 12912 12226 8255 8258 13115 13115 -0.0408305945917391 ENTLAFLPG 9 Unmodified _ENTLAFLPG_ 0 0 0 ENST00000538936.6_2_17:79862156-79862276:-|nuORF ENST00000538936.6_2_17:79862156-79862276:-|nuORF ENST00000538936.6_2_17:79862156-79862276:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2509765625 2 481.2531 960.491647 -0.046056 -2.2165E-05 0.089283 4.2968E-05 0.043227 2.0803E-05 481.2529712881447 19.05 0.76262 19.05 18.652 19.415 0 38 21 3 0 0 0 0.54354 1 3056 3056 16.942 2.3606 1 5695900 12913 11053 8256 8259 13116 13116 0.009820786605814646 ENTLQCPKT 9 Unmodified _ENTLQCPKT_ 0 0 0 ENSG00000196233|ENST00000421806|LCOR ENSG00000196233|ENST00000421806|LCOR ENSG00000196233|ENST00000421806|LCOR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 345.2104187011719 3 345.170941 1032.491 NaN NaN NaN NaN NaN NaN NaN 79.654 1 75.978 75.478 76.478 -3.676 0 0 0 0.23508 1 15179 15179 4.5289 0.19963 1 12914 7249 8257 8260 13117 13117 -0.023950840507950488 ENTLVPGW 8 Unmodified _ENTLVPGW_ 0 0 0 REV__nc|ENSG00000180574|Q2VIR3-2|EIF2S3B REV__nc|ENSG00000180574|Q2VIR3-2|EIF2S3B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2312927246094 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 140 1 135.04 134.54 135.54 -4.952 0 0 0 0.23538 1 26938 26938 0.12286 0 1 + 12915 24194 8258 8261 13118 13118 -0.010864770279567892 ENTRKTEPRWK 11 Unmodified _ENTRKTEPRWK_ 0 0 0 REV__ENST00000469937.2_1_7:46729000-46799342:-|nuORF REV__ENST00000469937.2_1_7:46729000-46799342:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 482.2579650878906 3 482.26003 1443.75826 NaN NaN NaN NaN NaN NaN NaN 116.09 1 116.09 115.59 116.59 0 0 0 0 0.22632 1 22857 22857 0.026206 0 1 + 12916 22023 8259 8262 13119 13119 0.05413137152117997 ENVAKKLKHL 10 Unmodified _ENVAKKLKHL_ 0 0 0 REV__ENSG00000139865|ENST00000553443|TTC6 REV__ENSG00000139865|ENST00000553443|TTC6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2498168945312 2 590.364047 1178.71354 0.94078 0.0005554 3.6536 0.002157 4.5944 0.0027124 590.8675201555432 119.24 0.1783 114.59 114.46 114.64 -4.645 5 4 2 0 0 0 0.91149 1 22855 22855 5.7319 0 1 858410 + 12917 16547 8260 8263 13120 13120 0.13133358076765944 ENVDISTVY 9 Unmodified _ENVDISTVY_ 0 0 0 PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant;ENSG00000184304|ENST00000331968|PRKD1;nc|ENSG00000115825|O94806-2|PRKD3;ENST00000494667.5_1_2:37496701-37543667:-|nuORF;ENSG00000115825|ENST00000234179|PRKD3 PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant;ENSG00000115825|ENST00000234179|PRKD3 PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2665405273438 2 520.250754 1038.48696 0.18415 9.5805E-05 -0.029365 -1.5277E-05 0.15479 8.0528E-05 520.2506779968885 90.934 1.1075 87.156 86.677 87.784 -3.7779 93 31 5 0 0 0 0.40602 1 17365 17365 25.399 6.1423 1 39255000 12918 6902;2886 8261 8264 13121 13121 -0.03074850272855656 ENVDISTVY 9 Unmodified _ENVDISTVY_ 0 0 0 PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant;ENSG00000184304|ENST00000331968|PRKD1;nc|ENSG00000115825|O94806-2|PRKD3;ENST00000494667.5_1_2:37496701-37543667:-|nuORF;ENSG00000115825|ENST00000234179|PRKD3 PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant;ENSG00000115825|ENST00000234179|PRKD3 PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 520.250754 1038.48696 0.13598 7.0744E-05 -0.10577 -5.5027E-05 0.03021 1.5717E-05 520.250655981441 87.085 1.0097 87.085 86.666 87.676 0 -0.010923 -0.00033496 NaN 25.399 77 28 4 NaN NaN NaN NaN 0 NaN NaN 0 41457000 12919 6902;2886 8261 8264 -0.03074850272855656 ENVDISTVY 9 Unmodified _ENVDISTVY_ 0 0 0 PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant;ENSG00000184304|ENST00000331968|PRKD1;nc|ENSG00000115825|O94806-2|PRKD3;ENST00000494667.5_1_2:37496701-37543667:-|nuORF;ENSG00000115825|ENST00000234179|PRKD3 PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant;ENSG00000115825|ENST00000234179|PRKD3 PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 520.250754 1038.48696 -0.27376 -0.00014242 0.41605 0.00021645 0.14229 7.4028E-05 520.2509068014372 90.934 0.92644 87.075 86.615 87.541 -3.8595 -0.020675 0.000208 NaN 25.399 83 26 4 NaN NaN NaN NaN 0 NaN NaN 0 38999000 12920 6902;2886 8261 8264 -0.03074850272855656 ENVDISTVY 9 Unmodified _ENVDISTVY_ 0 0 0 PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant;ENSG00000184304|ENST00000331968|PRKD1;nc|ENSG00000115825|O94806-2|PRKD3;ENST00000494667.5_1_2:37496701-37543667:-|nuORF;ENSG00000115825|ENST00000234179|PRKD3 PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant;ENSG00000115825|ENST00000234179|PRKD3 PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 520.250754 1038.48696 -0.3685 -0.00019171 0.50015 0.00026021 0.13166 6.8494E-05 520.2509636655057 91.161 0.96323 87.067 86.6 87.563 -4.0946 -0.028828 0.00029551 NaN 25.399 82 27 4 NaN NaN NaN NaN 0 NaN NaN 0 38181000 12921 6902;2886 8261 8264 -0.03074850272855656 ENVDKLLYT 9 Unmodified _ENVDKLLYT_ 0 0 0 REV__nc|ENSG00000158019|Q9NXR7-4|BABAM2 REV__nc|ENSG00000158019|Q9NXR7-4|BABAM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7899780273438 2 547.790047 1093.56554 -0.30332 -0.00016615 0.35707 0.0001956 0.053748 2.9443E-05 547.790167595461 108.73 0.69701 104.36 104.05 104.75 -4.3776 46 19 3 0 0 0 0.28819 1 21394 21394 32.305 3.8186 1 3451000 + 12922 17319 8262 8265 13122 13122 0.022500020322468117 ENVDLVNI 8 Unmodified _ENVDLVNI_ 0 0 0 REV__ENST00000521384.5_1_5:21751848-21889748:-|nuORF REV__ENST00000521384.5_1_5:21751848-21889748:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2420349121094 2 458.242732 914.470912 0.3016 0.00013821 -0.31399 -0.00014388 -0.012391 -5.6781E-06 458.2425176589719 90.472 0.70355 86.428 86.021 86.725 -4.0443 30 19 2 0 0 0 0.47729 1 17274 17274 29.082 9.8246 1 876310 + 12923 17171 8263 8266 13123 13123 0.010254882809135779 ENVGEWID 8 Unmodified _ENVGEWID_ 0 0 0 REV__ATG10|p.H133N|1|0.41|ENSG00000152348|chr5:82178531-82178531|C/A|missense_variant REV__ATG10|p.H133N|1|0.41|ENSG00000152348|chr5:82178531-82178531|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23480224609375 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 67.911 1 64.375 63.875 64.875 -3.5362 0 0 0 0.20618 1 12751 12751 20.454 0 1 + 12924 13141 8264 8267 13124 13124 -0.06291675132843011 ENVGQCSH 8 Unmodified _ENVGQCSH_ 0 0 0 ENSG00000196652|ENST00000326775|ZKSCAN5 ENSG00000196652|ENST00000326775|ZKSCAN5 ENSG00000196652|ENST00000326775|ZKSCAN5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2335510253906 2 437.179609 872.344665 NaN NaN NaN NaN NaN NaN NaN 80.105 1 76.3 75.8 76.8 -3.8048 0 0 0 0.21486 1 15198 15198 7.9102 0 1 12925 7296 8265 8268 13125 13125 -0.09661341496030218 ENVNLIVEY 9 Unmodified _ENVNLIVEY_ 0 0 0 tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1 tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1 tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7841186523438 2 546.782222 1091.54989 0.31169 0.00017043 -0.025684 -1.4044E-05 0.28601 0.00015638 546.7822174626613 62.791 1.0331 59.546 59.067 60.1 -3.2451 68 29 3 0 0 0 0.42844 1 11827 11827 24.021 1.2843 1 10724000 12926 26388 8266 8269 13126 13126 0.007777155151870829 ENVPPFLL 8 Unmodified _ENVPPFLL_ 0 0 0 ACSBG2|p.I527Ffs*19|1|0.35|ENSG00000130377|chr19:6187315-6187315|C/-|frameshift_variant ACSBG2|p.I527Ffs*19|1|0.35|ENSG00000130377|chr19:6187315-6187315|C/-|frameshift_variant ACSBG2|p.I527Ffs*19|1|0.35|ENSG00000130377|chr19:6187315-6187315|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2464904785156 2 464.760561 927.506569 NaN NaN NaN NaN NaN NaN NaN 68.066 1 64.53 64.03 65.03 -3.5362 0 0 0 0.19954 1 12780 12780 24.674 0 1 12927 38 8267 8270 13127 13127 0.03991570528569355 ENVPPGTSVLK 11 Unmodified _ENVPPGTSVLK_ 0 0 0 ENST00000502926.1_2_5:140806427-140807822:+|nuORF ENST00000502926.1_2_5:140806427-140807822:+|nuORF ENST00000502926.1_2_5:140806427-140807822:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2151794433594 3 380.880156 1139.61864 0.019051 7.2561E-06 0.65605 0.00024988 0.6751 0.00025713 381.214961836217 39.5 0.55707 37.058 36.721 37.278 -2.4419 40 15 4 0 0 0 0.65515 1 7098 7098 7.0341 3.9618 1 1793300 12928 10637 8268 8271 13128 13128 0.05441379814897118 ENVRVKWY 8 Unmodified _ENVRVKWY_ 0 0 0 RAC3|p.A95V|1|0.26|ENSG00000169750|chr17:82033005-82033005|C/T|missense_variant RAC3|p.A95V|1|0.26|ENSG00000169750|chr17:82033005-82033005|C/T|missense_variant RAC3|p.A95V|1|0.26|ENSG00000169750|chr17:82033005-82033005|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.78466796875 2 547.293091 1092.57163 0.29939 0.00016386 -1.4257 -0.00078029 -1.1263 -0.00061643 547.7938294379526 125.25 0.60477 120.6 120.24 120.85 -4.6495 37 16 3 0 0 0 8448 1 24052 24052 14.838 14.459 1 3927400 12929 12853 8269 8272 13129 13129 0.029045650544276214 ENVVKHVVL 9 Unmodified _ENVVKHVVL_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 518.5867919921875 2 518.811116 1035.60768 NaN NaN NaN NaN NaN NaN NaN 162.56 1 157.37 156.87 157.87 -5.1878 0 0 0 0.23508 1 31570 31570 6.7232 0 1 12930 7388 8270 8273 13130 13130 0.09130022231283874 ENVVPLASV 9 Unmodified _ENVVPLASV_ 0 0 0 REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3 REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23663330078125 2 464.260925 926.507297 -0.085392 -3.9644E-05 -0.24256 -0.00011261 -0.32795 -0.00015225 464.26083683202097 66.594 1.2919 63.486 62.991 64.283 -3.1086 126 36 5 0 0 0 0.19311 1 12836 12836 37.974 5.1883 1 341330000 + 12931 15440 8271 8274 13131 13131 0.04110365177609765 ENVVPLASV 9 Unmodified _ENVVPLASV_ 0 0 0 REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3 REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.260925 926.507297 -0.17139 -7.9572E-05 -0.034203 -1.5879E-05 -0.2056 -9.5451E-05 464.2609019194983 63.687 1.6643 63.687 63.225 64.889 0 0.10844 0.00024638 NaN 37.974 135 47 5 NaN NaN NaN NaN 0 NaN NaN 0 268190000 + 12932 15440 8271 8274 0.04110365177609765 ENVVPLASV 9 Unmodified _ENVVPLASV_ 0 0 0 REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3 REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.260925 926.507297 0.24326 0.00011294 -0.58283 -0.00027058 -0.33957 -0.00015765 464.26066828204443 67.082 1.7545 63.586 63.044 64.799 -3.4965 0.0067875 -0.00026303 NaN 37.974 135 49 5 NaN NaN NaN NaN 0 NaN NaN 0 306750000 + 12933 15440 8271 8274 0.04110365177609765 ENVVPLASV 9 Unmodified _ENVVPLASV_ 0 0 0 REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3 REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.260925 926.507297 0.3176 0.00014745 -0.61854 -0.00028716 -0.30095 -0.00013972 464.2606545338801 66.883 2.0193 63.556 63.025 65.044 -3.3268 -0.022341 -0.00029619 NaN 37.974 162 57 5 NaN NaN NaN NaN 0 NaN NaN 0 290680000 + 12934 15440 8271 8274 0.04110365177609765 ENWDNEDSS 9 Unmodified _ENWDNEDSS_ 0 0 0 REV__GPNMB|p.I383Nfs*9|1|0.21|ENSG00000136235|chr7:23266607-23266608|-/A|frameshift_variant REV__GPNMB|p.I383Nfs*9|1|0.21|ENSG00000136235|chr7:23266607-23266608|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7771606445312 2 548.196707 1094.37886 0.046096 2.527E-05 -4.0023 -0.0021941 -3.9562 -0.0021688 548.1950317369035 48.751 0.87425 45.752 45.368 46.242 -2.999 39 24 2 0 0 0 0.87511 1 8853 8853 0.40072 0 1 2753100 + 12935 16319 8272 8275 13132 13132 -0.16455266594084605 ENWDVWYE 8 Unmodified _ENWDVWYE_ 0 0 0 nc|ENSG00000181744|Q8NDZ4-2|DIPK2A;ENSG00000181744|ENST00000315691|DIPK2A nc|ENSG00000181744|Q8NDZ4-2|DIPK2A nc|ENSG00000181744|Q8NDZ4-2|DIPK2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2106628417969 3 380.82594 1139.45599 0.15075 5.7409E-05 -0.13001 -4.9511E-05 0.020741 7.8985E-06 380.8258249265938 105.1 0.69627 105.1 104.76 105.46 0 27 19 2 0 0 0 0.89687 1 20611 20611 0.12286 0 1 1620700 12936 6738 8273 8276 13133 13133 -0.10816003587092382 ENWIISIS 8 Unmodified _ENWIISIS_ 0 0 0 ENST00000580498.5_1_17:57287412-57290261:+|nuORF ENST00000580498.5_1_17:57287412-57290261:+|nuORF ENST00000580498.5_1_17:57287412-57290261:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24365234375 2 481.2531 960.491647 0.054447 2.6203E-05 0.44289 0.00021314 0.49734 0.00023935 481.2532559292357 65.088 1.1882 62.041 61.522 62.71 -3.047 72 34 3 0 0 0 8448 1 12529 12529 14.838 0 1 3888300 12937 11497 8274 8277 13134 13134 0.00982078660570096 ENWLYRNQKKW 11 Unmodified _ENWLYRNQKKW_ 0 0 0 ENSG00000149054|ENST00000278319|ZNF215 ENSG00000149054|ENST00000278319|ZNF215 ENSG00000149054|ENST00000278319|ZNF215 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2725219726562 3 522.272158 1563.79465 NaN NaN NaN NaN NaN NaN NaN 161.69 1 156.5 156 157 -5.1878 0 0 0 0.22632 1 31381 31381 0.172 0 1 12938 4768 8275 8278 13135 13135 0.03530014048828889 ENYILRAT 8 Unmodified _ENYILRAT_ 0 0 0 nc|ENSG00000143552|Q5VU65-2|NUP210L;NUP210L|p.F1858Lfs*11|1|0.38|ENSG00000143552|chr1:153992928-153992928|A/-|frameshift_variant;ENSG00000143552|ENST00000368559|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26409912109375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 84.077 1 84.077 83.577 84.577 0 0 0 0 0.21039 1 16391 16391 16.942 0 1 12939 4503 8276 8279 13136 13136 0.023328834091330464 ENYITKADE 9 Unmodified _ENYITKADE_ 0 0 0 ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2655029296875 2 541.753661 1081.49277 NaN NaN NaN NaN NaN NaN NaN 86.939 1 82.989 82.489 83.489 -3.9503 0 0 0 0.1599 1 16555 16555 29.082 0 1 12940 4995 8277 8280 13137 13137 -0.04471751761207088 ENYITYKN 8 Unmodified _ENYITYKN_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2728881835938 2 522.753464 1043.49238 -0.52657 -0.00027527 -2.788 -0.0014575 -3.3146 -0.0017327 522.7514814635002 151.18 0.17772 145.94 145.8 145.97 -5.2365 6 4 2 0 0 0 0.88497 1 29285 29285 10.074 3.8681 1 1751000 12941 7215 8278 8281 13138 13138 -0.027631266903881624 ENYLHIQKCSL 11 Unmodified _ENYLHIQKCSL_ 0 0 0 ENST00000478292.2_1_7:80262587-80262641:+|nuORF ENST00000478292.2_1_7:80262587-80262641:+|nuORF ENST00000478292.2_1_7:80262587-80262641:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.1153869628906 3 449.8957 1346.66527 -0.094038 -4.2307E-05 0.82369 0.00037058 0.72966 0.00032827 449.895702799775 95.843 0.50952 91.962 91.785 92.294 -3.881 21 14 2 0 0 0 0.76929 1 18373 18373 7.0371 0.41363 1 1159100 12942 10315 8279 8282 13139 13139 0.00580496374550421 ENYLHIQKCSL 11 Unmodified _ENYLHIQKCSL_ 0 0 0 ENST00000478292.2_1_7:80262587-80262641:+|nuORF ENST00000478292.2_1_7:80262587-80262641:+|nuORF ENST00000478292.2_1_7:80262587-80262641:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 449.8957 1346.66527 0.029728 1.3374E-05 0.16839 7.5756E-05 0.19811 8.913E-05 450.23014348183494 92.128 0.42201 92.128 91.912 92.334 0 0.094844 -0.00022993 NaN 7.0371 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1557000 12943 10315 8279 8282 0.00580496374550421 ENYLHIQKCSL 11 Unmodified _ENYLHIQKCSL_ 0 0 0 ENST00000478292.2_1_7:80262587-80262641:+|nuORF ENST00000478292.2_1_7:80262587-80262641:+|nuORF ENST00000478292.2_1_7:80262587-80262641:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 449.8957 1346.66527 -0.066835 -3.0069E-05 0.27111 0.00012197 0.20427 9.1901E-05 449.8958089107522 96.06 0.39821 92.011 91.828 92.226 -4.0496 -0.022785 -9.1288E-05 NaN 7.0371 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1373400 12944 10315 8279 8282 0.00580496374550421 ENYLHIQKCSL 11 Unmodified _ENYLHIQKCSL_ 0 0 0 ENST00000478292.2_1_7:80262587-80262641:+|nuORF ENST00000478292.2_1_7:80262587-80262641:+|nuORF ENST00000478292.2_1_7:80262587-80262641:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 449.8957 1346.66527 -0.094038 -4.2307E-05 0.82369 0.00037058 0.72966 0.00032827 449.895702799775 95.843 0.50952 91.962 91.785 92.294 -3.881 -0.07206 0.00065453 NaN 7.0371 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1159100 12945 10315 8279 8282 0.00580496374550421 ENYLQVLRS 9 Unmodified _ENYLQVLRS_ 0 0 0 KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant;ENSG00000179023|ENST00000400664|KLHDC7A KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.19189453125 3 374.536501 1120.58767 -0.40709 -0.00015247 -0.0088162 -3.302E-06 -0.4159 -0.00015577 374.5365117336081 104.28 0.27377 100.06 99.825 100.1 -4.2183 11 7 2 0 0 0 0.70121 1 20499 20499 6.1918 0.40842 1 611700 12946 12006 8280 8283 13140 13140 0.03220226500661738 ENYLQVLRS 9 Unmodified _ENYLQVLRS_ 0 0 0 KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant;ENSG00000179023|ENST00000400664|KLHDC7A KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 374.536501 1120.58767 0.17518 6.561E-05 -0.11115 -4.1631E-05 0.064024 2.3979E-05 374.5363881770258 100.45 0.34512 100.45 100.13 100.48 0 0.19589 -5.0717E-05 NaN 6.1918 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 802500 12947 12006 8280 8283 0.03220226500661738 ENYLQVLRS 9 Unmodified _ENYLQVLRS_ 0 0 0 KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant;ENSG00000179023|ENST00000400664|KLHDC7A KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.536501 1120.58767 -0.40709 -0.00015247 -0.0088162 -3.302E-06 -0.4159 -0.00015577 374.5365117336081 104.28 0.27377 100.06 99.825 100.1 -4.2183 -0.19589 6.427E-05 NaN 6.1918 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 611700 12948 12006 8280 8283 0.03220226500661738 ENYQKVMCC 9 Unmodified _ENYQKVMCC_ 0 0 0 nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.1042785644531 3 373.154017 1116.44022 0.1279 4.7727E-05 -0.45069 -0.00016818 -0.32279 -0.00012045 373.1538158702269 95.927 0.82235 91.736 91.311 92.133 -4.1911 56 23 3 0 0 0 0.87609 1 18276 18276 0.86438 0.55734 1 7439400 12949 4586 8281 8284 13141 13141 -0.11334072691647634 ENYQKVMCC 9 Unmodified _ENYQKVMCC_ 0 0 0 nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 373.154017 1116.44022 -0.19175 -7.1553E-05 -0.14325 -5.3454E-05 -0.335 -0.00012501 373.15393888771786 95.763 0.78595 91.713 91.338 92.124 -4.0496 0.058991 -0.00015106 NaN 0.86438 59 22 4 NaN NaN NaN NaN 0 NaN NaN 0 7192700 12950 4586 8281 8284 -0.11334072691647634 ENYQKVMCC 9 Unmodified _ENYQKVMCC_ 0 0 0 nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 373.154017 1116.44022 -0.69669 -0.00025997 0.39007 0.00014555 -0.30662 -0.00011442 373.15412064259425 95.574 0.76655 91.693 91.295 92.062 -3.881 0.038789 0.00044597 NaN 0.86438 59 21 4 NaN NaN NaN NaN 0 NaN NaN 0 13383000 12951 4586 8281 8284 -0.11334072691647634 ENYVPGKL 8 Unmodified _ENYVPGKL_ 0 0 0 nc|ENSG00000175600|Q9HAC7-4|SUGCT;SUGCT|p.S389Wfs*17|1|0.03|ENSG00000175600|chr7:40749486-40749487|-/ATGGCAAAACACAGAAGTG|frameshift_variant;ENSG00000175600|ENST00000335693|SUGCT;nc|ENSG00000175600|Q9HAC7-3|SUGCT nc|ENSG00000175600|Q9HAC7-4|SUGCT nc|ENSG00000175600|Q9HAC7-4|SUGCT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2464294433594 2 460.247818 918.481082 0.68283 0.00031427 -4.1011 -0.0018875 -3.4183 -0.0015732 460.24596326302793 23.155 0.32717 21.602 21.507 21.834 -1.5532 15 8 3 0 0 0 0.44108 1 3985 3985 30.637 0.41173 1 629770 12952 6424 8282 8285 13142 13142 0.018580960061626683 ENYVPGKL 8 Unmodified _ENYVPGKL_ 0 0 0 nc|ENSG00000175600|Q9HAC7-4|SUGCT;SUGCT|p.S389Wfs*17|1|0.03|ENSG00000175600|chr7:40749486-40749487|-/ATGGCAAAACACAGAAGTG|frameshift_variant;ENSG00000175600|ENST00000335693|SUGCT;nc|ENSG00000175600|Q9HAC7-3|SUGCT nc|ENSG00000175600|Q9HAC7-4|SUGCT nc|ENSG00000175600|Q9HAC7-4|SUGCT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.247818 918.481082 0.21927 0.00010092 -3.2233 -0.0014835 -3.004 -0.0013826 460.24649881476734 21.585 0.27703 21.585 21.46 21.737 0 -0.0086272 0.00031931 NaN 30.637 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 490330 12953 6424 8282 8285 0.018580960061626683 ENYYNCNEC 9 Unmodified _ENYYNCNEC_ 0 0 0 ENSG00000175322|ENST00000590202|ZNF519 ENSG00000175322|ENST00000590202|ZNF519 ENSG00000175322|ENST00000590202|ZNF519 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3134765625 2 576.192056 1150.36956 -0.0066617 -3.8384E-06 2.0959 0.0012077 2.0893 0.0012038 576.6956794973372 132.18 0.24634 127.54 127.34 127.59 -4.6399 9 6 2 0 0 0 0.80521 1 26055 26055 6.7232 5.3936 1 1738600 12954 6401 8283 8286 13143 13143 -0.1996107447560007 EPADPEGAGL 10 Unmodified _EPADPEGAGL_ 0 0 0 ENSG00000180828|ENST00000321870|BHLHE22 ENSG00000180828|ENST00000321870|BHLHE22 ENSG00000180828|ENST00000321870|BHLHE22 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7220458984375 2 478.221997 954.429441 -0.081134 -3.88E-05 0.026095 1.2479E-05 -0.055039 -2.6321E-05 478.22196286045386 34.384 1.8309 34.384 33.654 35.485 0 143 52 4 0 0 0 0.32088 2 6183 6183;6459 36.127 10.728 1 7753300 12955 6696 8284 8287 13144;13145 13144 -0.04959692478405486 EPADPEGAGL 10 Unmodified _EPADPEGAGL_ 0 0 0 ENSG00000180828|ENST00000321870|BHLHE22 ENSG00000180828|ENST00000321870|BHLHE22 ENSG00000180828|ENST00000321870|BHLHE22 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7222900390625 2 478.221997 954.429441 -0.40144 -0.00019198 0.44168 0.00021122 0.040242 1.9245E-05 478.2221645391981 36.848 2.0909 34.379 33.482 35.573 -2.4688 156 59 4 0 0 0 0.23765 1 6688 6688 41.84 5.7126 1 13145000 12956 6696 8284 8287 13146 13146 -0.04959692478405486 EPADPEGAGL 10 Unmodified _EPADPEGAGL_ 0 0 0 ENSG00000180828|ENST00000321870|BHLHE22 ENSG00000180828|ENST00000321870|BHLHE22 ENSG00000180828|ENST00000321870|BHLHE22 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7377624511719 2 478.221997 954.429441 0.098716 4.7208E-05 -0.16577 -7.9277E-05 -0.067059 -3.2069E-05 478.2219118001858 36.817 2.1067 34.469 33.582 35.688 -2.3479 167 60 4 0 0 0 0.23765 2 6396 6396;6406 41.84 11.203 1 8798600 12957 6696 8284 8287 13147;13148 13147 -0.04959692478405486 EPADPEGAGL 10 Unmodified _EPADPEGAGL_ 0 0 0 ENSG00000180828|ENST00000321870|BHLHE22 ENSG00000180828|ENST00000321870|BHLHE22 ENSG00000180828|ENST00000321870|BHLHE22 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.720947265625 2 478.221997 954.429441 0.25758 0.00012318 -0.28954 -0.00013847 -0.031969 -1.5288E-05 478.2218365195836 37.001 2.0618 34.664 33.609 35.671 -2.3375 141 58 3 0 0 0 0.42569 1 6387 6387 29.082 3.6823 1 7079900 12958 6696 8284 8287 13149 13149 -0.04959692478405486 EPAEAMSDENE 11 Unmodified _EPAEAMSDENE_ 0 0 0 REV__nc|ENSG00000089195|Q9UJA5-4|TRMT6 REV__nc|ENSG00000089195|Q9UJA5-4|TRMT6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 611.2265625 2 611.232432 1220.45031 NaN NaN NaN NaN NaN NaN NaN 167.45 1 162.56 162.06 163.06 -4.8916 0 0 0 0.2367 1 32936 32936 2.9952 0.26005 1 + 12959 14526 8285 8288 13150 13150 -0.15109514951723213 EPAELLFYI 9 Unmodified _EPAELLFYI_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ADGRV1|p.S2670Rfs*9|1|0.05|ENSG00000164199|chr5:90697000-90697001|-/GCCCAAAATAATT|frameshift_variant;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ADGRV1|p.S1982Ffs*2|1|0.3|ENSG00000164199|chr5:90683859-90683860|-/T|frameshift_variant;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;ADGRV1|p.A1698Nfs*28|1|0.13|ENSG00000164199|chr5:90674214-90674215|-/GAACATATATATTC|frameshift_variant;ADGRV1|p.Y1610Tfs*36|1|0.42|ENSG00000164199|chr5:90672616-90672616|T/-|frameshift_variant;nc|ENSG00000164199|Q8WXG9-4|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7915649414062 2 547.792058 1093.56956 NaN NaN NaN NaN NaN NaN NaN 135.53 1 130.64 130.14 131.14 -4.8951 0 0 0 0.23508 1 26036 26036 12.532 1.4171 1 12960 5525 8286 8289 13151 13151 0.02652091525965261 EPAENKSLR 9 Unmodified _EPAENKSLR_ 0 0 0 REV__ENSG00000125484|ENST00000372146|GTF3C4 REV__ENSG00000125484|ENST00000372146|GTF3C4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2569580078125 2 522.277638 1042.54072 0.20139 0.00010518 -2.534 -0.0013234 -2.3326 -0.0012183 522.7786375457345 138.66 0.14264 138.66 138.59 138.73 0 5 3 2 0 0 0 0.6797 1 27522 27522 7.609 0.31972 1 1467200 + 12961 15817 8287 8290 13152 13152 0.021153669495106442 EPALRSWG 8 Unmodified _EPALRSWG_ 0 0 0 nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62 nc|ENSG00000075702|O43379|WDR62 nc|ENSG00000075702|O43379|WDR62 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2386474609375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 82.269 1 78.396 77.896 78.896 -3.8736 0 0 0 0.21486 1 15629 15629 12.532 0 1 12962 1525 8288 8291 13153 13153 0.0003634506618936939 EPAMYPRCGA 10 Unmodified _EPAMYPRCGA_ 0 0 0 REV__MAP2K4|p.L346Cfs*17|1|0.61|ENSG00000065559|chr17:12129283-12129283|T/-|frameshift_variant REV__MAP2K4|p.L346Cfs*17|1|0.61|ENSG00000065559|chr17:12129283-12129283|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7799072265625 2 547.741519 1093.46849 -0.077118 -4.2241E-05 -0.91317 -0.00050018 -0.99029 -0.00054242 547.7409083994684 81.987 1.1834 78.299 77.66 78.844 -3.6879 81 33 3 0 0 0 0.38778 1 15590 15590 0.26539 0 1 14853000 + 12963 14191 8289 8292 13154 13154 -0.07451006720043551 EPCKTTLK 8 Unmodified _EPCKTTLK_ 0 0 0 REV__nc|ENSG00000052841|Q96AE7-2|TTC17 REV__nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2484130859375 2 460.249503 918.484453 NaN NaN NaN NaN NaN NaN NaN 7.7146 1 6.6998 6.1998 7.1998 -1.0148 0 0 0 0.21486 1 653 653 0.69038 0 1 + 12964 14094 8290 8293 13155 13155 0.02195022788487222 EPCKTTLK 8 Unmodified _EPCKTTLK_ 0 0 0 REV__nc|ENSG00000052841|Q96AE7-2|TTC17 REV__nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2478332519531 2 460.249503 918.484453 NaN NaN NaN NaN NaN NaN NaN 8.1153 1 7.1005 6.6005 7.6005 -1.0148 0 0 0 0.21486 1 735 735 0.69038 0 1 + 12965 14094 8290 8293 13156 13156 0.02195022788487222 EPDCCDDERY 10 Unmodified _EPDCCDDERY_ 0 0 0 DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7567138671875 2 622.713353 1243.41215 NaN NaN NaN NaN NaN NaN NaN 130.54 1 125.7 125.2 126.2 -4.8355 0 0 0 0.22588 1 25066 25066 1.6526 0.17072 1 12966 833 8291 8294 13157 13157 -0.19981724138051504 EPDCCDDERY 10 Unmodified _EPDCCDDERY_ 0 0 0 DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7745971679688 2 622.713353 1243.41215 NaN NaN NaN NaN NaN NaN NaN 138.68 1 133.83 133.33 134.33 -4.8492 0 0 0 0.22588 1 26728 26728 1.6526 0.17072 1 12967 833 8291 8294 13158 13158 -0.19981724138051504 EPDCNPSEA 9 Unmodified _EPDCNPSEA_ 0 0 0 ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;DDX21|p.I198Hfs*12|1|0.07|ENSG00000165732|chr10:68962140-68962141|-/ACATCACT|frameshift_variant ENSG00000165732|ENST00000354185|DDX21 ENSG00000165732|ENST00000354185|DDX21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2520446777344 2 481.182014 960.349476 -0.23975 -0.00011537 -0.25428 -0.00012236 -0.49404 -0.00023772 481.1842954790563 57.585 0.75874 57.585 57.201 57.96 0 107 21 6 0 0 0 0.52242 1 10997 10997 36.127 4.0101 1 12209000 12968 5658 8292 8295 13159 13159 -0.13228502143920196 EPDCWGLHE 9 Unmodified _EPDCWGLHE_ 0 0 0 REV__ENST00000523488.5_1_8:3008917-3019783:-|nuORF REV__ENST00000523488.5_1_8:3008917-3019783:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7853393554688 2 543.221474 1084.42839 0.3334 0.00018111 2.432 0.0013211 2.7654 0.0015022 543.2228255260732 126.94 0.17116 126.94 126.88 127.06 0 5 4 2 0 0 0 0.87511 1 25067 25067 1.6526 0 1 621720 + 12969 20656 8293 8296 13160 13160 -0.11044230118977794 EPDLDDKANY 10 Unmodified _EPDLDDKANY_ 0 0 0 REV__CACNA2D1|p.Y629Tfs*3|1|0.3|ENSG00000153956|chr7:81984680-81984680|A/-|frameshift_variant REV__CACNA2D1|p.Y629Tfs*3|1|0.3|ENSG00000153956|chr7:81984680-81984680|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2769165039062 2 590.26185 1178.50915 NaN NaN NaN NaN NaN NaN NaN 172.08 1 167.19 166.69 167.69 -4.8977 0 0 0 0.22588 1 34118 34118 6.2058 0 1 + 12970 13239 8294 8297 13161 13161 -0.072966705951103 EPDMETYY 8 Unmodified _EPDMETYY_ 0 0 0 REV__ENSG00000130643|ENST00000252939|CALY REV__ENSG00000130643|ENST00000252939|CALY MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6760864257812 2 524.202415 1046.39028 0.22097 0.00011583 -1.8949 -0.00099329 -1.6739 -0.00087746 524.2011885502837 28.828 0.24409 28.828 28.635 28.879 0 10 6 2 0 0 0 1.0095 1 5104 5104 2.5775 0 1 918530 + 12971 16022 8295 8298 13162 13162 -0.13106160824304425 EPDPKAPE 8 Unmodified _EPDPKAPE_ 0 0 0 HS6ST3|p.E113K|1|0.58|ENSG00000185352|chr13:96091199-96091199|G/A|missense_variant HS6ST3|p.E113K|1|0.58|ENSG00000185352|chr13:96091199-96091199|G/A|missense_variant HS6ST3|p.E113K|1|0.58|ENSG00000185352|chr13:96091199-96091199|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 441.7138671875 2 441.713808 881.413062 NaN NaN NaN NaN NaN NaN NaN 60.955 1 57.731 57.231 58.231 -3.2237 0 0 0 0.22692 1 11406 11406 1.4551 1.3322 1 12972 11918 8296 8299 13163 13163 -0.032387736445230075 EPDQIITLH 9 Unmodified _EPDQIITLH_ 0 0 0 REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2800903320312 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 169.59 1 164.8 164.3 165.3 -4.7898 0 0 0 0.23508 1 34364 34364 10.074 2.1638 1 + 12973 12980 8297 8300 13164 13164 0.020531352350417365 EPDWEDWEP 9 Unmodified _EPDWEDWEP_ 0 0 0 REV__ENSG00000175414|ENST00000310389|ARL10 REV__ENSG00000175414|ENST00000310389|ARL10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.28662109375 2 601.735468 1201.45638 0.39574 0.00023813 -1.0007 -0.00060219 -0.60501 -0.00036406 602.2370650542035 152.72 0.14438 152.72 152.63 152.78 0 5 3 2 0 0 0 0.79776 1 30582 30582 1.8442 0 1 943600 + 12974 18474 8298 8301 13165 13165 -0.13628628657897934 EPDWEDWEP 9 Unmodified _EPDWEDWEP_ 0 0 0 REV__ENSG00000175414|ENST00000310389|ARL10 REV__ENSG00000175414|ENST00000310389|ARL10 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 601.735468 1201.45638 0.39574 0.00023813 -1.0007 -0.00060219 -0.60501 -0.00036406 602.2370650542035 152.72 0.14438 152.72 152.63 152.78 0 0 0 NaN 1.8442 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 943600 + 12975 18474 8298 8301 -0.13628628657897934 EPDWLYESMI 10 Unmodified _EPDWLYESMI_ 0 0 0 REV__nc|ENSG00000101892|Q9UN42-2|ATP1B4 REV__nc|ENSG00000101892|Q9UN42-2|ATP1B4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 641.7053833007812 2 641.786647 1281.55874 0.4189 0.00026884 4.1072 0.0026359 4.5261 0.0029048 641.7903684317253 171.15 0.20447 171.15 171.03 171.23 0 6 5 2 0 0 0 0.75676 1 35237 35237 3.5965 0.31518 1 8278200 + 12976 14807 8299 8302 13166 13166 -0.0707767891065032 EPDYSSYMTS 10 Unmodified _EPDYSSYMTS_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2589111328125 2 590.229161 1178.44377 NaN NaN NaN NaN NaN NaN NaN 171.39 1 166.51 166.01 167.01 -4.873 0 0 0 0.22588 1 33962 33962 3.5965 0 1 12977 7060 8300 8303 13167 13167 -0.13831408112446297 EPECDFPDE 9 Unmodified _EPECDFPDE_ 0 0 0 nc|ENSG00000082146|Q9C0K7-3|STRADB;ENSG00000082146|ENST00000194530|STRADB nc|ENSG00000082146|Q9C0K7-3|STRADB nc|ENSG00000082146|Q9C0K7-3|STRADB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2092590332031 3 360.799062 1079.37536 -0.29695 -0.00010714 -2.7326 -0.00098591 -3.0295 -0.001093 360.79842642825207 54.286 0.48956 54.286 54.172 54.662 0 18 13 2 0 0 0 0.59677 1 10403 10403 0.40827 0.26998 1 549640 12978 1635 8301 8304 13168 13168 -0.16115652692315052 EPEHPSRPVT 10 Unmodified _EPEHPSRPVT_ 0 0 0 ENST00000546126.6_1_12:133758239-133761326:+|nuORF;ENST00000588312.2_1_12:133758227-133778745:+|nuORF;ENST00000536899.6_1_12:133758152-133781113:+|nuORF ENST00000546126.6_1_12:133758239-133761326:+|nuORF ENST00000546126.6_1_12:133758239-133761326:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 574.7706298828125 2 574.78837 1147.56219 NaN NaN NaN NaN NaN NaN NaN 170.76 1 165.89 165.39 166.39 -4.873 0 0 0 0.22588 1 33811 33811 6.2058 0.47393 1 12979 11028 8302 8305 13169 13169 -0.005692480217703633 EPEIDRWGPPD 11 Unmodified _EPEIDRWGPPD_ 0 0 0 REV__ENST00000495881.1_1_1:156255017-156255866:+|nuORF REV__ENST00000495881.1_1_1:156255017-156255866:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22515869140625 3 437.53857 1309.59388 0.13273 5.8072E-05 -1.8103 -0.00079209 -1.6776 -0.00073402 437.53792157322107 19.708 0.37198 19.708 19.52 19.892 0 15 10 2 0 0 0 0.79848 1 3244 3244 3.8459 0.77364 1 821670 + 12980 17574 8303 8306 13170 13170 -0.04853300058471177 EPELLFEPL 9 Unmodified _EPELLFEPL_ 0 0 0 REV__nc|ENSG00000165164|Q6ZTR5-6|CFAP47 REV__nc|ENSG00000165164|Q6ZTR5-6|CFAP47 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7913208007812 2 543.789515 1085.56448 NaN NaN NaN NaN NaN NaN NaN 155.24 1 149.96 149.46 150.46 -5.2854 0 0 0 0.20628 1 30110 30110 21.747 3.6117 1 + 12981 13388 8304 8307 13171 13171 0.02511787663343057 EPEQASAAL 9 Unmodified _EPEQASAAL_ 0 0 0 REV__ENST00000488118.6_1_10:111637426-111637540:-|nuORF REV__ENST00000488118.6_1_10:111637426-111637540:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22454833984375 2 458.224539 914.434526 0.58336 0.00026731 -1.0178 -0.00046637 -0.43442 -0.00019906 458.22400815825245 45.951 1.2127 45.951 45.413 46.626 0 89 34 4 0 0 0 0.27986 1 8593 8593 32.786 5.902 1 24594000 + 12982 22268 8305 8308 13172 13172 -0.026113886158100286 EPFDEPPP 8 Unmodified _EPFDEPPP_ 0 0 0 REV__nc|ENSG00000256463|Q9BXA9-2|SALL3 REV__nc|ENSG00000256463|Q9BXA9-2|SALL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1653137207031 3 309.807998 926.402163 -0.42751 -0.00013245 0.34486 0.00010684 -0.082655 -2.5607E-05 309.80802617748594 36.87 0.56062 36.87 36.632 37.192 0 26 15 2 0 0 0 8448 1 6764 6764 0.62683 0.62683 1 1663000 + 12983 19864 8306 8309 13173 13173 -0.06398176018808499 EPFDEPPP 8 Unmodified _EPFDEPPP_ 0 0 0 REV__nc|ENSG00000256463|Q9BXA9-2|SALL3 REV__nc|ENSG00000256463|Q9BXA9-2|SALL3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16973876953125 3 309.807998 926.402163 -0.42751 -0.00013245 0.34486 0.00010684 -0.082655 -2.5607E-05 309.80802617748594 36.87 0.56062 36.87 36.632 37.192 0 26 15 2 0 0 0 0.89848 1 6850 6850 0.62683 0.62683 1 1663000 + 12984 19864 8306 8309 13174 13174 -0.06398176018808499 EPFIKAQF 8 Unmodified _EPFIKAQF_ 0 0 0 REV__ENST00000463527.5_1_1:155144960-155145249:-|nuORF REV__ENST00000463527.5_1_1:155144960-155145249:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26666259765625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 153.73 1 148.46 147.96 148.96 -5.2669 0 0 0 0.23749 1 29803 29803 0.62683 0 1 + 12985 17571 8307 8310 13175 13175 0.027349729028514957 EPFRPGSFR 9 Unmodified _EPFRPGSFR_ 0 0 0 nc|ENSG00000204613|Q9UDY6-2|TRIM10;ENSG00000204613|ENST00000449742|TRIM10 nc|ENSG00000204613|Q9UDY6-2|TRIM10 nc|ENSG00000204613|Q9UDY6-2|TRIM10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7705078125 2 546.78289 1091.55123 0.32554 0.000178 -1.1668 -0.00063796 -0.84122 -0.00045996 546.7821683469981 138.52 0.95538 133.68 133.23 134.19 -4.84 74 26 4 0 0 0 0.7009 1 26619 26619 6.2058 0.47393 1 18585000 12986 7595 8308 8311 13176 13176 0.009113943946204017 EPFYWKLPEQF 11 Unmodified _EPFYWKLPEQF_ 0 0 0 LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2;LAMA2|p.V2281Cfs*12|1|0.36|ENSG00000196569|chr6:129456464-129456465|-/T|frameshift_variant;LAMA2|p.A2665Cfs*4|1|0.15|ENSG00000196569|chr6:129491988-129491989|-/G|frameshift_variant;LAMA2|p.N1765Mfs*26|1|0.4|ENSG00000196569|chr6:129393101-129393101|A/-|frameshift_variant LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3749389648438 2 742.366453 1482.71835 NaN NaN NaN NaN NaN NaN NaN 126.95 1 126.95 126.45 127.45 0 0 0 0 0.23324 1 25056 25056 5.7319 0 1 12987 7283 8309 8312 13177 13177 -0.0036980257118557347 EPGDFRHWN 9 Unmodified _EPGDFRHWN_ 0 0 0 ENSG00000100122|ENST00000647684|CRYBB1 ENSG00000100122|ENST00000647684|CRYBB1 ENSG00000100122|ENST00000647684|CRYBB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 579.1233520507812 2 579.259779 1156.50501 0.87005 0.00050398 -2.3272 -0.001348 -1.4571 -0.00084406 579.7586653332855 23.148 0.17863 21.595 21.474 21.653 -1.5532 5 4 2 0 0 0 0.87258 1 3981 3981 4.3292 0.38484 1 388200 12988 1932 8310 8313 13178 13178 -0.06698670507489624 EPGECESWMKD 11 Unmodified _EPGECESWMKD_ 0 0 0 REV__nc|ENSG00000116882|Q9NYQ3-2|HAO2 REV__nc|ENSG00000116882|Q9NYQ3-2|HAO2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 655.5587158203125 2 655.75502 1309.49549 NaN NaN NaN NaN NaN NaN NaN 171.16 1 171.16 170.66 171.66 0 0 0 0 0.2367 1 35245 35245 2.9952 0 1 + 12989 24012 8311 8314 13179 13179 -0.14687987690217597 EPGEDKYDYE 10 Unmodified _EPGEDKYDYE_ 0 0 0 UBE2G1|p.G103D|1|0.34|ENSG00000132388|chr17:4289348-4289348|C/T|missense_variant UBE2G1|p.G103D|1|0.34|ENSG00000132388|chr17:4289348-4289348|C/T|missense_variant UBE2G1|p.G103D|1|0.34|ENSG00000132388|chr17:4289348-4289348|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7543334960938 2 622.751315 1243.48808 NaN NaN NaN NaN NaN NaN NaN 172.84 1 167.95 167.45 168.45 -4.8977 0 0 0 0.22588 1 34300 34300 3.5965 0 1 12990 26543 8312 8315 13180 13180 -0.12392680694597402 EPGESEYSALY 11 Unmodified _EPGESEYSALY_ 0 0 0 REV__nc|ENSG00000138670|Q0VAM2-2|RASGEF1B REV__nc|ENSG00000138670|Q0VAM2-2|RASGEF1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7518920898438 2 622.769508 1243.52446 NaN NaN NaN NaN NaN NaN NaN 110.78 1 106.29 105.79 106.79 -4.4915 0 0 0 0.224 1 21265 21265 13.042 0 1 + 12991 16477 8313 8316 13181 13181 -0.08755803797885164 EPGGQLVTD 9 Unmodified _EPGGQLVTD_ 0 0 0 nc|ENSG00000175497|Q8N608-4|DPP10;nc|ENSG00000175497|Q8N608-2|DPP10;ENSG00000175497|ENST00000410059|DPP10;nc|ENSG00000175497|Q8N608-3|DPP10 nc|ENSG00000175497|Q8N608-4|DPP10 nc|ENSG00000175497|Q8N608-4|DPP10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22540283203125 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 33.459 1 31.141 30.641 31.641 -2.3175 0 0 0 0.19657 1 6118 6118 4.897 1.6157 1 12992 6415 8314 8317 13182 13182 -0.026113886158100286 EPGLFAVGLY 10 Unmodified _EPGLFAVGLY_ 0 0 0 PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7 PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2855834960938 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 174.67 1 169.88 169.38 170.38 -4.7898 0 0 0 0.22588 1 35692 35692 10.074 1.4806 1 12993 7914 8315 8318 13183 13183 0.024552247287829232 EPGPVVPP 8 Unmodified _EPGPVVPP_ 0 0 0 ENST00000467136.5_1_X:30854677-30861194:-|nuORF;ENSG00000157625|ENST00000288422|TAB3 ENST00000467136.5_1_X:30854677-30861194:-|nuORF ENST00000467136.5_1_X:30854677-30861194:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 396.2196350097656 2 396.218529 790.422505 NaN NaN NaN NaN NaN NaN NaN 52.995 1 52.995 52.495 53.495 0 0 0 0 0.21486 1 10082 10082 5.7604 3.1829 1 12994 5133 8316 8319 13184 13184 0.01891039431666286 EPGRKKRE 8 Unmodified _EPGRKKRE_ 0 0 0 REV__MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant REV__MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 500.2861328125 2 500.28834 998.562127 NaN NaN NaN NaN NaN NaN NaN 173.23 1 168.35 167.85 168.85 -4.881 0 0 0 0.21486 1 34427 34427 9.3474 0 1 + 12995 23851 8317 8320 13185 13185 0.06278796768901884 EPGSMSRVSP 10 Unmodified _EPGSMSRVSP_ 0 0 0 REV__SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant REV__SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.685302734375 2 523.750398 1045.48624 NaN NaN NaN NaN NaN NaN NaN 33.85 1 31.703 31.203 32.203 -2.1468 0 0 0 0.22588 1 5916 5916 9.3831 1.473 1 + 12996 14413 8318 8321 13186 13186 -0.03467968193535853 EPGTLVGN 8 Unmodified _EPGTLVGN_ 0 0 0 nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5;ENSG00000240764|ENST00000252087|PCDHGC5 nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5 nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 394.19598388671875 2 393.703243 785.391933 -0.056992 -2.2438E-05 1.3814 0.00054387 1.3244 0.00052143 393.703138351674 43.14 0.75991 40.489 40.295 41.055 -2.651 29 20 2 0 0 0 8448 1 7812 7812 2.643 0 1 1306700 12997 7846 8319 8322 13187 13187 -0.009347389533672867 EPHCDCDD 8 Unmodified _EPHCDCDD_ 0 0 0 REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant;REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant;REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 467.13885498046875 2 467.139292 932.264032 NaN NaN NaN NaN NaN NaN NaN 4.0632 1 4.0632 3.5632 4.5632 0 0 0 0 0.21486 1 12 12 0.69038 0.69038 1 + 12998 18795;25497;25498 8320 8323 13188 13188 -0.20480990601242866 EPHCDCDD 8 Unmodified _EPHCDCDD_ 0 0 0 REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant;REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant;REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 467.1402893066406 2 467.139292 932.264032 NaN NaN NaN NaN NaN NaN NaN 6.1836 1 5.5574 5.0574 6.0574 -0.62626 0 0 0 0.21486 1 430 430 0.69038 0.69038 1 + 12999 18795;25497;25498 8320 8323 13189 13189 -0.20480990601242866 EPHCDCDD 8 Unmodified _EPHCDCDD_ 0 0 0 REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant;REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant;REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 467.1395263671875 2 467.139292 932.264032 NaN NaN NaN NaN NaN NaN NaN 4.5832 1 3.5744 3.0744 4.0744 -1.0089 0 0 0 0.21486 1 99 99 0.69038 0.69038 1 + 13000 18795;25497;25498 8320 8323 13190 13190 -0.20480990601242866 EPHCDCDD 8 Unmodified _EPHCDCDD_ 0 0 0 REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant;REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant;REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 467.1395263671875 2 467.139292 932.264032 NaN NaN NaN NaN NaN NaN NaN 5.4023 1 4.3934 3.8934 4.8934 -1.0089 0 0 0 0.21486 1 238 238 0.69038 0.69038 1 + 13001 18795;25497;25498 8320 8323 13191 13191 -0.20480990601242866 EPHDYELY 8 Unmodified _EPHDYELY_ 0 0 0 REV__SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant REV__SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2847900390625 2 533.229822 1064.44509 0.45443 0.00024231 1.0456 0.00055752 1.5 0.00079984 533.2302507110398 139.7 0.10626 134.75 134.67 134.78 -4.952 4 2 2 0 0 0 0.98792 1 26861 26861 14.582 6.6715 1 708000 + 13002 18274 8321 8324 13192 13192 -0.08455405961376528 EPHLITNNV 9 Unmodified _EPHLITNNV_ 0 0 0 REV__PEPD|p.V181I|1|0.37|ENSG00000124299|chr19:33478053-33478053|C/T|missense_variant REV__PEPD|p.V181I|1|0.37|ENSG00000124299|chr19:33478053-33478053|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 346.2011413574219 3 346.185579 1035.53491 NaN NaN NaN NaN NaN NaN NaN 126.28 1 121.58 121.08 122.08 -4.6998 0 0 0 0.23508 1 24295 24295 2.7352 0.23671 1 + 13003 15771 8322 8325 13193 13193 0.018562684378366612 EPHPAGRR 8 Unmodified _EPHPAGRR_ 0 0 0 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2459411621094 2 460.246475 918.478397 -0.033323 -1.5337E-05 -1.0745 -0.00049454 -1.1078 -0.00050988 460.24598789649013 24.471 0.37945 22.937 22.714 23.094 -1.5342 17 10 2 0 0 0 0.69887 1 4011 4011 14.582 1.5392 1 2167500 + 13004 18776 8323 8326 13194 13194 0.015896853918548004 EPHRYHAAP 9 Unmodified _EPHRYHAAP_ 0 0 0 REV__ENST00000327697.10_1_3:49736975-49738106:+|nuORF REV__ENST00000327697.10_1_3:49736975-49738106:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.19970703125 3 359.845669 1076.51518 -0.90211 -0.00032462 -0.30531 -0.00010986 -1.2074 -0.00043448 359.84557836935716 24.827 0.40945 22.974 22.778 23.187 -1.8534 23 11 3 0 0 0 0.87262 1 4090 4090 5.2969 4.2254 1 1026200 + 13005 20593 8324 8327 13195 13195 -0.020020627822532333 EPHSHLVMR 9 Unmodified _EPHSHLVMR_ 0 0 0 REV__ENST00000569681.5_2_16:50775982-50776727:+|nuORF REV__ENST00000569681.5_2_16:50775982-50776727:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 369.25738525390625 3 369.190559 1104.54985 NaN NaN NaN NaN NaN NaN NaN 109.94 1 105.56 105.06 106.06 -4.3776 0 0 0 0.23508 1 21666 21666 2.7352 0.23671 1 + 13006 23094 8325 8328 13196 13196 0.0017543703420415113 EPIHEKDYNIL 11 Unmodified _EPIHEKDYNIL_ 0 0 0 REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2380065917969 3 457.56987 1369.68778 0.25732 0.00011774 -0.12716 -5.8184E-05 0.13016 5.9557E-05 457.56972573176176 116.02 0.62701 116.02 115.63 116.25 0 41 17 3 0 0 0 0.77537 1 22782 22782 6.6235 2.7775 1 6390700 + 13007 13707 8326 8329 13197 13197 0.0177241904384573 EPIHLVKRREL 11 Unmodified _EPIHLVKRREL_ 0 0 0 REV__ENSG00000115364|ENST00000393909|MRPL19 REV__ENSG00000115364|ENST00000393909|MRPL19 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 695.2193603515625 2 695.419885 1388.82522 NaN NaN NaN NaN NaN NaN NaN 166.44 1 161.49 160.99 161.99 -4.9484 0 0 0 0.23634 1 32616 32616 3.2813 0.28607 1 + 13008 15425 8327 8330 13198 13198 0.14635792433887218 EPIRLLWPQ 9 Unmodified _EPIRLLWPQ_ 0 0 0 REV__ENST00000009589.7_1_8:56986648-56987037:-|nuORF REV__ENST00000009589.7_1_8:56986648-56987037:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3153686523438 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 67.428 1 63.932 63.432 64.432 -3.4965 0 0 0 0.23508 1 12650 12650 6.7232 0.51738 1 + 13009 19969 8328 8331 13199 13199 0.08057997639662062 EPIVAEAPP 9 Unmodified _EPIVAEAPP_ 0 0 0 REV__ENSG00000198265|ENST00000358691|HELZ REV__ENSG00000198265|ENST00000358691|HELZ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.527099609375 2 461.74765 921.480748 NaN NaN NaN NaN NaN NaN NaN 77.417 1 73.758 73.258 74.258 -3.6588 0 0 0 0.1124 1 14738 14738 36.044 12.896 1 + 13010 19400 8329 8332 13200 13200 0.01686676286283273 EPKDDDDEEE 10 Unmodified _EPKDDDDEEE_ 0 0 0 CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;CHD5|p.E405V|1|0.1|ENSG00000116254|chr1:6149023-6149023|T/A|missense_variant CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 611.27294921875 2 610.725495 1219.43644 0.49388 0.00030163 -0.27348 -0.00016702 0.2204 0.0001346 611.2258873242024 166.35 0.20581 161.37 161.29 161.5 -4.9811 6 5 2 0 0 0 0.74994 1 32585 32585 5.7319 2.1354 1 7220300 13011 515 8330 8333 13201 13201 -0.16450469179153515 EPKDPPLPGPI 11 Unmodified _EPKDPPLPGPI_ 0 0 0 MBD6|p.P931Lfs*15|1|0.41|ENSG00000166987|chr12:57528528-57528528|C/-|frameshift_variant MBD6|p.P931Lfs*15|1|0.41|ENSG00000166987|chr12:57528528-57528528|C/-|frameshift_variant MBD6|p.P931Lfs*15|1|0.41|ENSG00000166987|chr12:57528528-57528528|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 580.7265014648438 2 580.321514 1158.62847 NaN NaN NaN NaN NaN NaN NaN 167.53 1 162.74 162.24 163.24 -4.7898 0 0 0 0.22943 1 33796 33796 8.7454 1.4562 1 13012 12115 8331 8334 13202 13202 0.055505678202735 EPKEEEEKEN 10 Unmodified _EPKEEEEKEN_ 0 0 0 REV__nc|ENSG00000164334|A1A519-3|FAM170A REV__nc|ENSG00000164334|A1A519-3|FAM170A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.75146484375 2 630.783147 1259.55174 NaN NaN NaN NaN NaN NaN NaN 137.78 1 137.78 137.28 138.28 0 0 0 0 0.22588 1 27335 27335 8.1555 0.54658 1 + 13013 17676 8332 8335 13203 13203 -0.06765320257500207 EPKEKKGAEA 10 Unmodified _EPKEKKGAEA_ 0 0 0 REV__PTN|p.V42*|2|0.27|ENSG00000105894|chr7:137253630-137253630|T/-|frameshift_variant REV__PTN|p.V42*|2|0.27|ENSG00000105894|chr7:137253630-137253630|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7844848632812 2 543.793121 1085.57169 0.15996 8.6984E-05 -0.43022 -0.00023395 -0.27027 -0.00014697 543.7926651129225 104.82 0.4784 100.47 100.14 100.62 -4.346 24 13 3 0 0 0 0.36162 1 20057 20057 14.405 0 1 1414400 + 13014 15023 8333 8336 13204 13204 0.032325202637593975 EPKGKEKEV 9 Unmodified _EPKGKEKEV_ 0 0 0 ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.Q1002Kfs*50|2|0.29|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.276611328125 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 149.33 1 144.21 143.71 144.71 -5.1204 0 0 0 0.23508 1 28933 28933 11.495 0.38025 1 13015 279 8334 8337 13205 13205 0.04629421752088092 EPKGTSDGERQ 11 Unmodified _EPKGTSDGERQ_ 0 0 0 REV__ENST00000451429.6_1_1:26596033-26596102:+|nuORF REV__ENST00000451429.6_1_1:26596033-26596102:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2726440429688 2 602.283648 1202.55274 NaN NaN NaN NaN NaN NaN NaN 170.79 1 165.92 165.42 166.42 -4.873 0 0 0 0.23151 1 33818 33818 7.1017 0.37856 1 + 13016 21806 8335 8338 13206 13206 -0.040430610979456105 EPKIQWRL 8 Unmodified _EPKIQWRL_ 0 0 0 TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant;nc|ENSG00000103168|Q15572-2|TAF1C;ENSG00000103168|ENST00000566732|TAF1C;nc|ENSG00000103168|Q15572|TAF1C;ENST00000564774.5_1_16:84212549-84214094:-|nuORF;nc|ENSG00000103168|Q15572-5|TAF1C;ENST00000564208.5_1_16:84212549-84215086:-|nuORF;nc|ENSG00000103168|Q15572-4|TAF1C TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.2312316894531 3 357.209948 1068.60801 -0.49044 -0.00017519 0.23644 8.446E-05 -0.254 -9.073E-05 357.2099698494519 69.975 0.75124 69.975 69.524 70.275 0 65 20 4 0 0 0 8448 1 13532 13532 1.7423 1.1154 1 11175000 13017 2169 8336 8339 13207 13207 0.07645441951126486 EPKKHRRMHRY 11 Unmodified _EPKKHRRMHRY_ 0 0 0 REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1 REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 769.4177856445312 2 769.417685 1536.82082 NaN NaN NaN NaN NaN NaN NaN 167.82 1 162.87 162.37 163.37 -4.948 0 0 0 0.23698 1 33048 33048 1.3295 0 1 + 13018 14249 8337 8340 13208 13208 0.07388004739323151 EPKKPIRKK 9 Unmodified _EPKKPIRKK_ 0 0 0 REV__ENST00000562687.6_3_16:32769598-32772029:+|nuORF REV__ENST00000562687.6_3_16:32769598-32772029:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2144470214844 3 375.248514 1122.72371 NaN NaN NaN NaN NaN NaN NaN 23.647 1 22.094 21.594 22.594 -1.5532 0 0 0 0.23508 1 4089 4089 4.897 0 1 + 13019 23067 8338 8341 13209 13209 0.16725965801970233 EPKKPPTSPV 10 Unmodified _EPKKPPTSPV_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2733154296875 2 540.308406 1078.60226 0.28971 0.00015653 -0.048237 -2.6063E-05 0.24147 0.00013047 540.3083306093672 156.48 1.0305 156.48 156.07 157.1 0 97 29 4 0 0 0 0.63253 1 31483 31483 17.443 2.1942 1 107980000 + 13020 17221 8339 8342 13210 13210 0.06610298648797652 EPKKVLRRL 9 Unmodified _EPKKVLRRL_ 0 0 0 REV__ENST00000475582.5_1_2:27591484-27592470:-|nuORF REV__ENST00000475582.5_1_2:27591484-27592470:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 570.024658203125 2 569.874582 1137.73461 NaN NaN NaN NaN NaN NaN NaN 173.27 1 168.48 167.98 168.98 -4.7898 0 0 0 0.23508 1 35334 35334 7.2892 0.56607 1 + 13021 15410 8340 8343 13211 13211 0.1712536817626642 EPKMEEEEHS 10 Unmodified _EPKMEEEEHS_ 0 0 0 nc|ENSG00000150275|Q96QU1-4|PCDH15 nc|ENSG00000150275|Q96QU1-4|PCDH15 nc|ENSG00000150275|Q96QU1-4|PCDH15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7764282226562 2 622.758617 1243.50268 NaN NaN NaN NaN NaN NaN NaN 162.24 1 157.45 156.95 157.95 -4.7898 0 0 0 0.22588 1 32279 32279 8.1555 2.4237 1 13022 12383 8341 8344 13212 13212 -0.10932931818115321 EPKNWYMDP 9 Unmodified _EPKNWYMDP_ 0 0 0 REV__nc|ENSG00000167995|O76090-3|BEST1 REV__nc|ENSG00000167995|O76090-3|BEST1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2562866210938 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 171.91 1 167.12 166.62 167.62 -4.7898 0 0 0 0.23508 1 34988 34988 10.824 4.1008 1 + 13023 24153 8342 8345 13213 13213 -0.0754679753374603 EPKVTPIRIQ 10 Unmodified _EPKVTPIRIQ_ 0 0 0 ASXL1|p.P570T|1|0.26|ENSG00000171456|chr20:32433906-32433906|C/A|missense_variant ASXL1|p.P570T|1|0.26|ENSG00000171456|chr20:32433906-32433906|C/A|missense_variant ASXL1|p.P570T|1|0.26|ENSG00000171456|chr20:32433906-32433906|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.9952392578125 2 590.856055 1179.69756 NaN NaN NaN NaN NaN NaN NaN 166.39 1 161.6 161.1 162.1 -4.7898 0 0 0 0.22588 1 33421 33421 13.042 0.80181 1 13024 244 8343 8346 13214 13214 0.11489651839838189 EPLDEDDDLEA 11 Unmodified _EPLDEDDDLEA_ 0 0 0 REV__HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant REV__HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.75634765625 2 630.759337 1259.50412 NaN NaN NaN NaN NaN NaN NaN 172.96 1 168.08 167.58 168.58 -4.881 0 0 0 0.23324 1 34361 34361 5.7319 0.43497 1 + 13025 14582 8344 8347 13215 13215 -0.11525019248369972 EPLDRFFQK 9 Unmodified _EPLDRFFQK_ 0 0 0 REV__STARD13|p.S964Qfs*4|1|0.28|ENSG00000133121|chr13:33110031-33110031|G/-|frameshift_variant REV__STARD13|p.S964Qfs*4|1|0.28|ENSG00000133121|chr13:33110031-33110031|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2645263671875 2 590.31148 1178.60841 NaN NaN NaN NaN NaN NaN NaN 169.3 1 164.37 163.87 164.87 -4.9295 0 0 0 0.23508 1 33420 33420 6.7232 0.51738 1 + 13026 16159 8345 8348 13216 13216 0.026248168803022054 EPLILILTI 9 Unmodified _EPLILILTI_ 0 0 0 REV__TMEM156|p.F17L|1|0.4|ENSG00000121895|chr4:39032265-39032265|A/G|missense_variant REV__TMEM156|p.F17L|1|0.4|ENSG00000121895|chr4:39032265-39032265|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.0168151855469 3 342.226604 1023.65798 NaN NaN NaN NaN NaN NaN NaN 154.99 1 149.73 149.23 150.23 -5.2526 0 0 0 0.23508 1 30054 30054 1.0715 0.80244 1 + 13027 24816 8346 8349 13217 13217 0.14710131836420715 EPLPPKGLQY 10 Unmodified _EPLPPKGLQY_ 0 0 0 ZNF692|p.L110Afs*54|1|0.36|ENSG00000171163|chr1:248857381-248857382|-/C|frameshift_variant;ENST00000491971.5_1_1:249149922-249151721:-|nuORF;ENST00000533927.5_1_1:249149922-249151721:-|nuORF;nc|ENSG00000171163|Q9BU19-3|ZNF692;nc|ENSG00000171163|Q9BU19-2|ZNF692;ENSG00000171163|ENST00000306601|ZNF692;nc|ENSG00000171163|Q9BU19-5|ZNF692 ZNF692|p.L110Afs*54|1|0.36|ENSG00000171163|chr1:248857381-248857382|-/C|frameshift_variant ZNF692|p.L110Afs*54|1|0.36|ENSG00000171163|chr1:248857381-248857382|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21185302734375 3 381.213246 1140.61791 NaN NaN NaN NaN NaN NaN NaN 46.1 1 46.1 45.6 46.6 0 0 0 0 0.22588 1 8679 8679 6.1918 2.3155 1 13028 6128 8347 8350 13218 13218 0.05322585165868077 EPLQWELR 8 Unmodified _EPLQWELR_ 0 0 0 nc|ENSG00000134779|Q68CL5-5|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0725402832031 3 357.525825 1069.55564 -0.20251 -7.2403E-05 0.13868 4.9581E-05 -0.063835 -2.2823E-05 357.52582947398696 52.533 0.28837 52.533 52.394 52.682 0 11 7 2 0 0 0 1.0267 1 9967 9967 0 0 1 2233500 13029 12337 8348 8351 13219 13219 0.0236485881750923 EPLRGLLWC 9 Unmodified _EPLRGLLWC_ 0 0 0 REV__RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant REV__RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7886352539062 2 543.791869 1085.56919 NaN NaN NaN NaN NaN NaN NaN 128.57 1 128.57 128.07 129.07 0 0 0 0 0.23508 1 25392 25392 6.7232 0 1 + 13030 24543 8349 8352 13220 13220 0.029823933251236667 EPLRTKFA 8 Unmodified _EPLRTKFA_ 0 0 0 ENST00000240100.6_1_8:29207880-29208030:-|nuORF ENST00000240100.6_1_8:29207880-29208030:-|nuORF ENST00000240100.6_1_8:29207880-29208030:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7673645019531 2 481.276909 960.539266 -0.24277 -0.00011684 0.50743 0.00024421 0.26466 0.00012737 481.277128205733 57.277 1.9408 57.277 56.536 58.477 0 96 55 2 0 0 0 0.73936 1 11004 11004 8.5933 0 1 1919100 13031 8181 8350 8353 13221 13221 0.057417776514284924 EPLSIDRGP 9 Unmodified _EPLSIDRGP_ 0 0 0 REV__SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant REV__SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 329.0128173828125 3 328.510063 982.50836 -0.38118 -0.00012522 1.0773 0.00035391 0.69613 0.00022869 328.51034197325487 26.107 0.34188 26.107 25.985 26.327 0 14 9 2 0 0 0 0.8799 1 4540 4540 4.897 0 1 838270 + 13032 18958 8351 8354 13222 13222 0.01640579546540266 EPLSIDRGP 9 Unmodified _EPLSIDRGP_ 0 0 0 REV__SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant REV__SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 328.510063 982.50836 0.57369 0.00018846 0.14517 4.769E-05 0.71887 0.00023615 328.5101809703037 27.965 0.28624 26.009 25.838 26.124 -1.9561 -0.020197 -0.00072161 NaN 4.897 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 486360 + 13033 18958 8351 8354 0.01640579546540266 EPLSIDRGP 9 Unmodified _EPLSIDRGP_ 0 0 0 REV__SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant REV__SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 328.510063 982.50836 0.23646 7.7679E-05 0.69001 0.00022667 0.92647 0.00030435 328.5102523343154 27.786 0.38101 26.03 25.83 26.211 -1.7552 0.0011692 -0.00018466 NaN 4.897 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 762010 + 13034 18958 8351 8354 0.01640579546540266 EPLSIDRGP 9 Unmodified _EPLSIDRGP_ 0 0 0 REV__SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant REV__SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 328.510063 982.50836 -0.43055 -0.00014144 1.1167 0.00036683 0.6861 0.00022539 328.5103555856185 27.967 0.31202 25.971 25.822 26.134 -1.9962 -0.058274 0.00023581 NaN 4.897 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 665260 + 13035 18958 8351 8354 0.01640579546540266 EPLSKLIKTL 10 Unmodified _EPLSKLIKTL_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.N1135*|1|0.36|ENSG00000175054|chr3:142542712-142542713|-/A|frameshift_variant;ATR|p.S927Qfs*4|1|0.34|ENSG00000175054|chr3:142553254-142553255|-/A|frameshift_variant;ATR|p.S709Yfs*25|1|0.07|ENSG00000175054|chr3:142556093-142556094|AA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 571.03759765625 2 571.363182 1140.71181 0.16004 9.144E-05 3.3053 0.0018885 3.4653 0.00198 571.366519567777 173.3 0.17274 168.51 168.44 168.61 -4.7898 6 4 2 0 0 0 0.91149 1 35336 35336 3.5965 2.1146 1 7085000 13036 6383 8352 8355 13223 13223 0.1470830426815155 EPMEWYVADEF 11 Unmodified _EPMEWYVADEF_ 0 0 0 REV__ENSG00000140519|ENST00000268122|RHCG REV__ENSG00000140519|ENST00000268122|RHCG MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 708.13134765625 2 708.294836 1414.57512 NaN NaN NaN NaN NaN NaN NaN 167.55 1 162.76 162.26 163.26 -4.7898 0 0 0 0.2367 1 33805 33805 2.9952 0 1 + 13037 16582 8353 8356 13224 13224 -0.11558597744533472 EPMGCTTKMLC 11 Unmodified _EPMGCTTKMLC_ 0 0 0 REV__PSKH1|p.T260M|1|0.29|ENSG00000159792|chr16:67909528-67909528|C/T|missense_variant REV__PSKH1|p.T260M|1|0.29|ENSG00000159792|chr16:67909528-67909528|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 607.2589721679688 2 607.25783 1212.50111 NaN NaN NaN NaN NaN NaN NaN 167.11 1 162.16 161.66 162.66 -4.948 0 0 0 0.23379 1 32837 32837 5.2969 0.96765 1 + 13038 24520 8354 8357 13225 13225 -0.09664303703698351 EPMKPLLLPQ 10 Unmodified _EPMKPLLLPQ_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant;MGA|p.E1249Rfs*42|1|0.17|ENSG00000174197|chr15:41729244-41729244|A/-|frameshift_variant;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant nc|ENSG00000174197|Q8IWI9-3|MGA;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant nc|ENSG00000174197|Q8IWI9-3|MGA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 583.3057250976562 2 583.33611 1164.65767 NaN NaN NaN NaN NaN NaN NaN 169.28 1 164.49 163.99 164.99 -4.7898 0 0 0 0.22535 1 34284 34284 20.415 7.3721 1 13039 6335;12140 8355 8358 13226 13226 0.08192388844940979 EPMYYTCSPL 10 Unmodified _EPMYYTCSPL_ 0 0 0 REV__ENSG00000123388|ENST00000546378|HOXC11 REV__ENSG00000123388|ENST00000546378|HOXC11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2730712890625 2 602.256668 1202.49878 NaN NaN NaN NaN NaN NaN NaN 166.74 1 161.95 161.45 162.45 -4.7898 0 0 0 0.22588 1 33536 33536 6.2058 2.6093 1 + 13040 15727 8356 8359 13227 13227 -0.09436692845542893 EPNALLSEPV 10 Unmodified _EPNALLSEPV_ 0 0 0 REV__ENSG00000125285|ENST00000376945|SOX21 REV__ENSG00000125285|ENST00000376945|SOX21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.0733947753906 3 356.85724 1067.54989 -1.4936 -0.00053301 1.3787 0.000492 -0.11492 -4.1011E-05 356.85786952937224 20.783 2.3221 19.062 18.836 21.159 -1.7211 151 66 6 0 0 0 0.91149 1 3564 3564 0.13989 0.017027 1 364510000 + 13041 15806 8357 8360 13228 13228 0.01881715515196447 EPNLIIYLA 9 Unmodified _EPNLIIYLA_ 0 0 0 REV__ENST00000228434.7_1_12:9905759-9905828:-|nuORF REV__ENST00000228434.7_1_12:9905759-9905828:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7000732421875 2 523.30005 1044.58555 0.18915 9.8985E-05 -3.786 -0.0019812 -3.5969 -0.0018822 523.2974434242564 131.09 0.2155 131.09 130.97 131.19 0 6 5 2 0 0 0 0.81359 1 25918 25918 11.495 7.5503 1 1784100 + 13042 20056 8358 8361 13229 13229 0.06503797762843533 EPNQCTNVMSG 11 Unmodified _EPNQCTNVMSG_ 0 0 0 REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2 REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2653198242188 2 590.24208 1178.46961 NaN NaN NaN NaN NaN NaN NaN 177.82 1 172.91 172.41 173.41 -4.9088 0 0 0 0.22632 1 35464 35464 0.026206 0 1 + 13043 18043 8359 8362 13230 13230 -0.11248837141829426 EPPHLCCRWRW 11 Unmodified _EPPHLCCRWRW_ 0 0 0 REV__ENST00000566567.1_1_9:139000642-139000753:-|nuORF REV__ENST00000566567.1_1_9:139000642-139000753:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 741.8482055664062 2 741.847716 1481.68088 NaN NaN NaN NaN NaN NaN NaN 170.01 1 165.08 164.58 165.58 -4.9295 0 0 0 0.23698 1 33600 33600 2.7352 0 1 + 13044 23121 8360 8363 13231 13231 -0.040694955893968654 EPPLPHAL 8 Unmodified _EPPLPHAL_ 0 0 0 ENST00000267116.7_1_12:56632135-56632420:-|nuORF ENST00000267116.7_1_12:56632135-56632420:-|nuORF ENST00000267116.7_1_12:56632135-56632420:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2170715332031 2 437.245078 872.475603 NaN NaN NaN NaN NaN NaN NaN 114.05 1 114.05 113.55 114.55 0 0 0 0 0.21486 1 22430 22430 9.3474 0 1 13045 8380 8361 8364 13232 13232 0.034264172143252836 EPPRLVVGH 9 Unmodified _EPPRLVVGH_ 0 0 0 REV__nc|ENSG00000144771|Q9HBL6-2|LRTM1 REV__nc|ENSG00000144771|Q9HBL6-2|LRTM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 335.2326965332031 3 335.194298 1002.56106 -0.31089 -0.00010421 0.58198 0.00019508 0.2711 9.087E-05 335.1944485337816 59.626 0.62967 56.692 56.33 56.96 -2.9333 30 17 2 0 0 0 0.87918 1 11473 11473 1.0715 0 1 1224100 + 13046 16802 8362 8365 13233 13233 0.05988582399993447 EPPSNRQGY 9 Unmodified _EPPSNRQGY_ 0 0 0 REV__GFOD1|p.A272P|1|0.21|ENSG00000145990|chr6:13365102-13365102|C/G|missense_variant REV__GFOD1|p.A272P|1|0.21|ENSG00000145990|chr6:13365102-13365102|C/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6864624023438 2 524.246338 1046.47812 -0.086639 -4.542E-05 -0.51095 -0.00026786 -0.59759 -0.00031328 524.2458492636405 127.43 0.45688 122.81 122.57 123.03 -4.6172 17 12 2 0 0 0 0.49746 1 25138 25138 2.6312 1.4164 1 857350 + 13047 23569 8363 8366 13234 13234 -0.04325779118653372 EPPSRAPGHQQ 11 Unmodified _EPPSRAPGHQQ_ 0 0 0 nc|ENSG00000186510|P51800-2|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA nc|ENSG00000186510|P51800-2|CLCNKA nc|ENSG00000186510|P51800-2|CLCNKA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2982177734375 2 602.296893 1202.57923 NaN NaN NaN NaN NaN NaN NaN 179.9 1 174.99 174.49 175.49 -4.9114 0 0 0 0.23698 1 35901 35901 1.1933 0 1 13048 7063 8364 8367 13235 13235 -0.013953274159575813 EPQATPSVS 9 Unmodified _EPQATPSVS_ 0 0 0 REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2243347167969 2 458.224539 914.434526 0.58336 0.00026731 -1.0178 -0.00046637 -0.43442 -0.00019906 458.22400815825245 45.951 1.2127 45.951 45.413 46.626 0 89 34 4 0 0 0 0.11717 2 8687 8687;8702 49.933 11.959 1 24594000 + 13049 19427 8365 8368 13236;13237 13236 -0.0261138861579866 EPQATPSVS 9 Unmodified _EPQATPSVS_ 0 0 0 REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2239685058594 2 458.224539 914.434526 -0.1941 -8.8942E-05 -0.63213 -0.00028966 -0.82623 -0.0003786 458.2241915209431 48.902 1.8648 46.03 44.873 46.738 -2.872 108 52 4 0 0 0 0.11717 1 9274 9274 49.933 7.8384 1 40719000 + 13050 19427 8365 8368 13238 13238 -0.0261138861579866 EPQATPSVS 9 Unmodified _EPQATPSVS_ 0 0 0 REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2244567871094 2 458.224539 914.434526 -0.028417 -1.3022E-05 -0.67887 -0.00031107 -0.70729 -0.0003241 458.22416968700986 49.085 1.4356 46.086 45.468 46.904 -2.999 100 40 5 0 0 0 0.09143 2 8939 8939;8987 58.679 12.658 1 40911000 + 13051 19427 8365 8368 13239;13240 13239 -0.0261138861579866 EPQATPSVS 9 Unmodified _EPQATPSVS_ 0 0 0 REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2242736816406 2 458.224539 914.434526 -0.083026 -3.8044E-05 -0.64929 -0.00029752 -0.73231 -0.00033556 458.22417185333103 49.095 1.2554 46.089 45.518 46.774 -3.0068 93 35 4 0 0 0 0.057505 2 9044 9000;9044 68.081 13.307 1 32412000 + 13052 19427 8365 8368 13241;13242 13242 -0.0261138861579866 EPQCHGCCC 9 Unmodified _EPQCHGCCC_ 0 0 0 REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2767028808594 2 490.148083 978.281613 NaN NaN NaN NaN NaN NaN NaN 139.98 1 139.98 139.48 140.48 0 0 0 0 0.23508 1 27847 27847 0.52476 0.52476 1 + 13053 13727 8366 8369 13243 13243 -0.20839689871581868 EPQCHGCCC 9 Unmodified _EPQCHGCCC_ 0 0 0 REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2673645019531 2 490.148083 978.281613 NaN NaN NaN NaN NaN NaN NaN 140.03 1 140.03 139.53 140.53 0 0 0 0 0.23508 1 27858 27858 0.52476 0.52476 1 + 13054 13727 8366 8369 13244 13244 -0.20839689871581868 EPQDDDYLYC 10 Unmodified _EPQDDDYLYC_ 0 0 0 ENSG00000164256|ENST00000296682|PRDM9;ENSG00000126856|ENST00000449207|PRDM7 ENSG00000164256|ENST00000296682|PRDM9 ENSG00000164256|ENST00000296682|PRDM9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7539672851562 2 630.739893 1259.46523 NaN NaN NaN NaN NaN NaN NaN 132.89 1 132.89 132.39 133.39 0 0 0 0 0.22588 1 26281 26281 3.2813 0.28607 1 13055 5526 8367 8370 13245 13245 -0.15412023083740678 EPQEAQIT 8 Unmodified _EPQEAQIT_ 0 0 0 REV__TBX22|p.P27T|1|0.05|ENSG00000122145|chrX:80022348-80022348|C/A|missense_variant REV__TBX22|p.P27T|1|0.05|ENSG00000122145|chrX:80022348-80022348|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22442626953125 2 458.224539 914.434526 -0.1941 -8.8942E-05 -0.63213 -0.00028966 -0.82623 -0.0003786 458.2241915209431 48.902 1.8648 46.03 44.873 46.738 -2.872 108 52 4 0 0 0 0.23433 2 9223 9223;9237 42.095 0.25493 1 40719000 + 13056 24775 8368 8371 13246;13247 13246 -0.026113886158100286 EPQHREHLLFQ 11 Unmodified _EPQHREHLLFQ_ 0 0 0 ENST00000264852.8_2_3:113251777-113285301:+|nuORF ENST00000264852.8_2_3:113251777-113285301:+|nuORF ENST00000264852.8_2_3:113251777-113285301:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7217712402344 3 478.580992 1432.72115 NaN NaN NaN NaN NaN NaN NaN 13.481 1 12.271 11.771 12.771 -1.2106 0 0 0 0.23698 1 1707 1707 0.50596 0.36606 1 13057 8344 8369 8372 13248 13248 0.022094656063700313 EPQRRKHFF 9 Unmodified _EPQRRKHFF_ 0 0 0 ENST00000530427.5_1_11:68287059-68287095:+|nuORF ENST00000530427.5_1_11:68287059-68287095:+|nuORF ENST00000530427.5_1_11:68287059-68287095:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7755126953125 2 622.835988 1243.65742 NaN NaN NaN NaN NaN NaN NaN 129.31 1 129.31 128.81 129.81 0 0 0 0 0.23508 1 25543 25543 10.074 1.9184 1 13058 10956 8370 8373 13249 13249 0.0453414995993171 EPQRTLIEAF 10 Unmodified _EPQRTLIEAF_ 0 0 0 REV__ENSG00000167077|ENST00000401548|MEI1 REV__ENSG00000167077|ENST00000401548|MEI1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2916259765625 2 602.322045 1202.62954 NaN NaN NaN NaN NaN NaN NaN 133.04 1 133.04 132.54 133.54 0 0 0 0 0.22588 1 26312 26312 8.7454 0.58988 1 + 13059 17898 8371 8374 13250 13250 0.036327821891973144 EPQRVCAL 8 Unmodified _EPQRVCAL_ 0 0 0 TBC1D16|p.E293K|1|0.41|ENSG00000167291|chr17:79952721-79952721|C/T|missense_variant;ENSG00000167291|ENST00000310924|TBC1D16 TBC1D16|p.E293K|1|0.41|ENSG00000167291|chr17:79952721-79952721|C/T|missense_variant TBC1D16|p.E293K|1|0.41|ENSG00000167291|chr17:79952721-79952721|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2392272949219 2 458.23947 914.464386 0.066389 3.0422E-05 0.30024 0.00013758 0.36663 0.000168 458.2393160896592 57.993 0.80505 54.788 54.29 55.095 -3.2052 37 22 3 0 0 0 0.62642 1 10848 10848 20.454 3.5113 1 951950 13060 5798 8372 8375 13251 13251 0.003732718485366604 EPRAIALH 8 Unmodified _EPRAIALH_ 0 0 0 ENSG00000162337|ENST00000294304|LRP5;LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant;LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant;nc|ENSG00000290796|A4QPB2-2|LRP5L;nc|ENSG00000290796|A4QPB2|LRP5L ENSG00000162337|ENST00000294304|LRP5 ENSG00000162337|ENST00000294304|LRP5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76025390625 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 67.377 1 63.881 63.381 64.381 -3.4965 0 0 0 0.23107 1 12640 12640 0.063987 0 1 13061 5321 8373 8376 13252 13252 0.051766243371730525 EPRAIALH 8 Unmodified _EPRAIALH_ 0 0 0 ENSG00000162337|ENST00000294304|LRP5;LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant;LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant;nc|ENSG00000290796|A4QPB2-2|LRP5L;nc|ENSG00000290796|A4QPB2|LRP5L ENSG00000162337|ENST00000294304|LRP5 ENSG00000162337|ENST00000294304|LRP5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7610778808594 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 157.19 1 151.9 151.4 152.4 -5.2854 0 0 0 0.2343 1 30500 30500 0.0082765 0 1 13062 5321 8373 8376 13253 13253 0.051766243371730525 EPRAIALH 8 Unmodified _EPRAIALH_ 0 0 0 ENSG00000162337|ENST00000294304|LRP5;LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant;LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant;nc|ENSG00000290796|A4QPB2-2|LRP5L;nc|ENSG00000290796|A4QPB2|LRP5L ENSG00000162337|ENST00000294304|LRP5 ENSG00000162337|ENST00000294304|LRP5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.759765625 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 171.12 1 166.21 165.71 166.71 -4.9149 0 0 0 0.22684 1 33861 33861 0.68139 0.054566 1 13063 5321 8373 8376 13254 13254 0.051766243371730525 EPRAIALH 8 Unmodified _EPRAIALH_ 0 0 0 ENSG00000162337|ENST00000294304|LRP5;LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant;LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant;nc|ENSG00000290796|A4QPB2-2|LRP5L;nc|ENSG00000290796|A4QPB2|LRP5L ENSG00000162337|ENST00000294304|LRP5 ENSG00000162337|ENST00000294304|LRP5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.761962890625 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 156.43 1 151.16 150.66 151.66 -5.2712 0 0 0 0.23711 1 30338 30338 0.12286 0 1 13064 5321 8373 8376 13255 13255 0.051766243371730525 EPRAVIKLLL 10 Unmodified _EPRAVIKLLL_ 0 0 0 REV__ENST00000393892.7_1_17:40127921-40128083:+|nuORF REV__ENST00000393892.7_1_17:40127921-40128083:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3134155273438 2 576.379166 1150.74378 NaN NaN NaN NaN NaN NaN NaN 170.34 1 165.55 165.05 166.05 -4.7898 0 0 0 0.22588 1 34565 34565 3.2813 1.2216 1 + 13065 21242 8374 8377 13256 13256 0.174437167419228 EPRDRRRWP 9 Unmodified _EPRDRRRWP_ 0 0 0 ENST00000372022.5_1_9:136197973-136198507:-|nuORF ENST00000372022.5_1_9:136197973-136198507:-|nuORF ENST00000372022.5_1_9:136197973-136198507:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.15423583984375 4 317.674623 1266.66939 -0.55829 -0.00017736 -0.65614 -0.00020844 -1.2144 -0.00038579 317.6744685787191 15.707 1.0938 14.485 13.998 15.092 -1.2219 103 31 5 0 0 0 0.88469 1 2244 2244 0 0 1 73237000 13066 9172 8375 8378 13257 13257 0.04671766703131652 EPREKNTRKWQ 11 Unmodified _EPREKNTRKWQ_ 0 0 0 tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 491.2245788574219 3 491.263663 1470.76916 NaN NaN NaN NaN NaN NaN NaN 139.65 1 135.01 134.51 135.51 -4.6439 0 0 0 0.22632 1 27572 27572 0.026206 0 1 13067 25880 8376 8379 13258 13258 0.052605395263981336 EPRHPTPP 8 Unmodified _EPRHPTPP_ 0 0 0 REV__FNBP4|p.P174H|1|0.33|ENSG00000109920|chr11:47753032-47753032|G/T|missense_variant REV__FNBP4|p.P174H|1|0.33|ENSG00000109920|chr11:47753032-47753032|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2574768066406 2 465.743234 929.471915 0.68521 0.00031913 -0.60069 -0.00027977 0.084518 3.9364E-05 465.7428226088714 28.666 0.51221 26.71 26.434 26.946 -1.9561 34 14 4 0 0 0 0.81042 1 5171 5171 16.942 0 1 1692800 + 13068 23541 8377 8380 13259 13259 0.004357474404741879 EPRPCNQL 8 Unmodified _EPRPCNQL_ 0 0 0 REV__NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant REV__NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73529052734375 2 478.734551 955.45455 NaN NaN NaN NaN NaN NaN NaN 151.62 1 146.45 145.95 146.95 -5.1759 0 0 0 0.22834 1 29386 29386 0.62683 0 1 + 13069 24394 8378 8381 13260 13260 -0.02495916156851763 EPRPPRRRRQR 11 Unmodified _EPRPPRRRRQR_ 0 0 0 ENST00000302787.2_1_4:1857661-1857766:-|nuORF ENST00000302787.2_1_4:1857661-1857766:-|nuORF ENST00000302787.2_1_4:1857661-1857766:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 501.9642639160156 3 501.966174 1502.87669 NaN NaN NaN NaN NaN NaN NaN 167.82 1 162.93 162.43 163.43 -4.8916 0 0 0 0.23698 1 33049 33049 0.40827 0.31342 1 13070 8578 8379 8382 13261 13261 0.14536973971144107 EPRPQHQAPLH 11 Unmodified _EPRPQHQAPLH_ 0 0 0 ENST00000521330.6_1_17:78397332-78402276:+|nuORF ENST00000521330.6_1_17:78397332-78402276:+|nuORF ENST00000521330.6_1_17:78397332-78402276:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.229248046875 3 437.230182 1308.66872 NaN NaN NaN NaN NaN NaN NaN 43.799 1 41.033 40.533 41.533 -2.7661 0 0 0 0.22632 1 7915 7915 0.026206 0 1 13071 10843 8380 8383 13262 13262 0.026729272634156587 EPRPSVDM 8 Unmodified _EPRPSVDM_ 0 0 0 REV__ENST00000464620.1_1_1:3388185-3390209:+|nuORF REV__ENST00000464620.1_1_1:3388185-3390209:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2403869628906 2 465.72111 929.427666 0.070648 3.2902E-05 0.0067213 3.1303E-06 0.07737 3.6033E-05 465.7211413357314 40.953 0.49137 38.463 38.252 38.743 -2.4896 20 13 2 0 0 0 0.91917 1 7356 7356 20.454 0 1 449030 + 13072 21939 8381 8384 13263 13263 -0.03987024768025549 EPRRPTQPP 9 Unmodified _EPRRPTQPP_ 0 0 0 REV__ENST00000263512.5_1_X:153717326-153718904:-|nuORF REV__ENST00000263512.5_1_X:153717326-153718904:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.19970703125 3 359.86484 1076.57269 -0.92376 -0.00033243 1.1174 0.0004021 0.1936 6.9669E-05 359.8652286533043 24.681 0.65088 22.827 22.572 23.223 -1.8534 47 18 4 0 0 0 0.87918 1 4090 4090 1.0715 0 1 8772700 + 13073 20214 8382 8385 13264 13264 0.03746779423318003 EPRSPGGGDLP 11 Unmodified _EPRSPGGGDLP_ 0 0 0 REV__ENST00000358689.8_2_8:23290247-23290583:-|nuORF REV__ENST00000358689.8_2_8:23290247-23290583:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.270751953125 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 131.92 1 131.92 131.42 132.42 0 0 0 0 0.19759 1 26075 26075 19.362 0.10495 1 + 13074 20841 8383 8386 13265 13265 -0.01705223430121805 EPRTFERF 8 Unmodified _EPRTFERF_ 0 0 0 REV__ENSG00000077942|ENST00000327858|FBLN1 REV__ENSG00000077942|ENST00000327858|FBLN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2722778320312 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 135.86 1 131.22 130.72 131.72 -4.6399 0 0 0 0.19753 1 26803 26803 25.399 8.457 1 + + 13075 13505 8384 8387 13266 13266 -0.001803118423140404 EPSDPLIFFL 10 Unmodified _EPSDPLIFFL_ 0 0 0 REV__ENST00000571695.1_1_17:7217390-7217998:-|nuORF REV__ENST00000571695.1_1_17:7217390-7217998:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 393.2913513183594 3 393.209502 1176.60668 0.029606 1.1641E-05 -0.3034 -0.0001193 -0.27379 -0.00010766 393.20941292786324 50.841 4.5117 47.796 45.815 50.327 -3.0453 206 129 4 0 0 0 0.91149 1 8947 8947 0.69767 0.69767 1 26305000 + 13076 23168 8385 8388 13267 13267 0.025437630717306092 EPSFLDVL 8 Unmodified _EPSFLDVL_ 0 0 0 REV__ENSG00000117601|ENST00000367698|SERPINC1 REV__ENSG00000117601|ENST00000367698|SERPINC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2442321777344 2 460.242201 918.469849 NaN NaN NaN NaN NaN NaN NaN 155.27 1 150.49 149.99 150.99 -4.7791 0 0 0 0.21486 1 30865 30865 9.3474 2.9933 1 + 13077 15527 8386 8389 13268 13268 0.0073527391199377234 EPSFSARFSCL 11 Unmodified _EPSFSARFSCL_ 0 0 0 ENSG00000110060|ENST00000227474|PUS3 ENSG00000110060|ENST00000227474|PUS3 ENSG00000110060|ENST00000227474|PUS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.758056640625 2 622.29243 1242.57031 1.0319 0.00064212 -4.0635 -0.0025287 -3.0317 -0.0018866 622.2915209263455 143.53 0.2818 138.88 138.68 138.96 -4.656 10 7 2 0 0 0 0.78434 1 28363 28363 5.7319 0.43497 1 3386400 13078 2557 8387 8390 13269 13269 -0.041274370966220886 EPSFSARFSCL 11 Unmodified _EPSFSARFSCL_ 0 0 0 ENSG00000110060|ENST00000227474|PUS3 ENSG00000110060|ENST00000227474|PUS3 ENSG00000110060|ENST00000227474|PUS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 622.29243 1242.57031 0.40019 0.00024903 1.0568 0.00065762 1.457 0.00090665 622.2926353469469 138.82 0.14645 138.82 138.73 138.88 0 -0.029318 0.0026397 NaN 5.7319 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1864500 13079 2557 8387 8390 -0.041274370966220886 EPSLKSVN 8 Unmodified _EPSLKSVN_ 0 0 0 REV__ENST00000573450.5_1_16:4390322-4391533:-|nuORF REV__ENST00000573450.5_1_16:4390322-4391533:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2168884277344 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 66.934 1 63.608 63.108 64.108 -3.3268 0 0 0 0.21486 1 12612 12612 8.5933 0.68312 1 + 13080 19702 8388 8391 13270 13270 0.019015056264720442 EPSLVPDLDP 10 Unmodified _EPSLVPDLDP_ 0 0 0 DHX57|p.N296Mfs*39|1|0.37|ENSG00000163214|chr2:38861523-38861523|T/-|frameshift_variant;nc|ENSG00000163214|Q6P158-3|DHX57;ENST00000479345.2_1_2:39084268-39090579:-|nuORF;nc|ENSG00000163214|Q6P158-2|DHX57;DHX57|p.L732Wfs*7|2|0.33|ENSG00000163214|chr2:38847043-38847043|A/-|frameshift_variant;ENSG00000163214|ENST00000457308|DHX57 DHX57|p.N296Mfs*39|1|0.37|ENSG00000163214|chr2:38861523-38861523|T/-|frameshift_variant DHX57|p.N296Mfs*39|1|0.37|ENSG00000163214|chr2:38861523-38861523|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.275146484375 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 14.133 1 12.96 12.46 13.46 -1.173 0 0 0 0.22588 1 1891 1891 3.5965 0.31518 1 13081 832 8389 8392 13271 13271 -0.0031399072172462184 EPSPALVERP 10 Unmodified _EPSPALVERP_ 0 0 0 REV__ENST00000492296.1_1_9:130690342-130693031:-|nuORF REV__ENST00000492296.1_1_9:130690342-130693031:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7918090820312 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 173.63 1 168.84 168.34 169.34 -4.7898 0 0 0 0.22518 1 35433 35433 22.736 7.898 1 + 13082 17900 8390 8393 13272 13272 0.03372824126358864 EPSPALVERP 10 Unmodified _EPSPALVERP_ 0 0 0 REV__ENST00000492296.1_1_9:130690342-130693031:-|nuORF REV__ENST00000492296.1_1_9:130690342-130693031:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77099609375 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 173.51 1 168.62 168.12 169.12 -4.8977 0 0 0 0.22518 1 34457 34457 22.736 9.2284 1 + 13083 17900 8390 8393 13273 13273 0.03372824126358864 EPSQQPTPPP 10 Unmodified _EPSQQPTPPP_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|299|3|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|299|3|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2684326171875 2 539.264196 1076.51384 -0.072761 -3.9237E-05 -0.13995 -7.547E-05 -0.21271 -0.00011471 539.263934503281 20.945 0.76629 19.561 19.341 20.108 -1.3847 69 21 5 0 0 0 0.51601 1 3263 3263 27.629 3.6082 1 41624000 + 13084 23759 8391 8394 13274 13274 -0.021357416616638147 EPSSDESDSL 10 Unmodified _EPSSDESDSL_ 0 0 0 REV__ENSG00000179270|ENST00000331664|PCARE REV__ENSG00000179270|ENST00000331664|PCARE MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2689208984375 2 533.214566 1064.41458 0.43558 0.00023226 0.11182 5.9625E-05 0.5474 0.00029188 533.2153755237424 136.05 0.18069 131.16 131 131.18 -4.8951 5 4 2 0 0 0 0.91149 1 26109 26109 0.35063 0 1 809050 + 13085 18649 8392 8395 13275 13275 -0.11505229137083006 EPSSPLSDP 9 Unmodified _EPSSPLSDP_ 0 0 0 nc|ENSG00000173276|Q9ULJ3-2|ZBTB21;ENSG00000173276|ENST00000310826|ZBTB21 nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 930.4307861328125 1 928.425818 927.418542 0.12987 0.00012058 0.12971 0.00012042 0.25958 0.000241 928.425837051447 42.579 1.4735 39.973 39.468 40.941 -2.606 89 41 3 0 0 0 0.48644 1 7655 7655 20.454 1.1966 1 4946400 13086 6285 8393 8396 13276 13276 -0.048070948526969914 EPSTACPQKQ 10 Unmodified _EPSTACPQKQ_ 0 0 0 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.8584289550781 3 363.506213 1087.49681 0.29112 0.00010583 0.7189 0.00026132 1.01 0.00036715 363.5064637168213 31.512 0.42764 29.486 29.302 29.73 -2.0264 19 11 2 0 0 0 0.36162 1 5427 5427 14.405 0 1 1236000 13087 5693 8394 8397 13277 13277 -0.04343985539117057 EPSTACPQKQ 10 Unmodified _EPSTACPQKQ_ 0 0 0 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 363.506213 1087.49681 -0.18889 -6.8662E-05 1.0905 0.00039641 0.90162 0.00032774 363.5066242920113 29.635 0.35096 29.635 29.398 29.749 0 0.098501 0.00018044 NaN 14.405 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1563300 13088 5693 8394 8397 -0.04343985539117057 EPSTACPQKQ 10 Unmodified _EPSTACPQKQ_ 0 0 0 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 363.506213 1087.49681 0.015245 5.5418E-06 0.72798 0.00026463 0.74323 0.00027017 363.50646232594283 31.723 0.32056 29.493 29.301 29.621 -2.2305 -0.04404 -0.0002149 NaN 14.405 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 505230 13089 5693 8394 8397 -0.04343985539117057 EPSTACPQKQ 10 Unmodified _EPSTACPQKQ_ 0 0 0 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 363.506213 1087.49681 -0.20116 -7.3123E-05 1.1471 0.00041697 0.94591 0.00034384 363.50662469764586 31.682 0.45729 29.533 29.265 29.722 -2.1483 -0.0033853 0.00024213 NaN 14.405 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 778930 13090 5693 8394 8397 -0.04343985539117057 EPSVEELL 8 Unmodified _EPSVEELL_ 0 0 0 REV__PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant REV__PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22705078125 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 77.252 1 73.485 72.985 73.985 -3.7664 0 0 0 0.19492 1 14634 14634 26.341 5.4701 1 + 13091 19361 8395 8398 13278 13278 -0.0009733381323258072 EPSVEELL 8 Unmodified _EPSVEELL_ 0 0 0 REV__PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant REV__PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2385559082031 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 77.21 1 73.551 73.051 74.051 -3.6588 0 0 0 0.19492 1 14696 14696 26.341 5.4701 1 + 13092 19361 8395 8398 13279 13279 -0.0009733381323258072 EPSVKIETK 9 Unmodified _EPSVKIETK_ 0 0 0 nc|ENSG00000039600|O94993-2|SOX30;ENSG00000039600|ENST00000265007|SOX30 nc|ENSG00000039600|O94993-2|SOX30 nc|ENSG00000039600|O94993-2|SOX30 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.1968688964844 3 344.197485 1029.57063 NaN NaN NaN NaN NaN NaN NaN 91.604 1 87.679 87.179 88.179 -3.9251 0 0 0 0.23508 1 17932 17932 2.2828 0.3764 1 13093 1192 8396 8399 13280 13280 0.057023058948516336 EPSWDSPW 8 Unmodified _EPSWDSPW_ 0 0 0 tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1 tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1 tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.1285400390625 3 335.14338 1002.40831 -0.30941 -0.0001037 0.28769 9.6419E-05 -0.021716 -7.2779E-06 335.1434489991195 51.731 2.2258 51.731 51.022 53.248 0 216 62 4 0 0 0 8448 1 9836 9836 3.5871 3.5871 1 100320000 13094 26494 8397 8400 13281 13281 -0.09279657787283213 EPSYLPKFN 9 Unmodified _EPSYLPKFN_ 0 0 0 REV__ENST00000590532.2_1_18:47361759-47363231:-|nuORF REV__ENST00000590532.2_1_18:47361759-47363231:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7782592773438 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 13.348 1 12.175 11.675 12.675 -1.173 0 0 0 0.23508 1 1722 1722 4.3292 0 1 + 13095 23324 8398 8401 13282 13282 0.0013803672338781325 EPTDRGLQ 8 Unmodified _EPTDRGLQ_ 0 0 0 nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000104972|ENST00000324602|LILRB1 nc|ENSG00000104972|Q8NHL6|LILRB1;ENSG00000104972|ENST00000324602|LILRB1 ENSG00000104972|ENST00000324602|LILRB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2304382324219 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 97.213 1 93.116 92.616 93.616 -4.0978 0 0 0 0.23366 1 19071 19071 0.12286 0 1 13096 12270;2272 8399 8402 13283 13283 -0.0148856652166387 EPTDRGLQ 8 Unmodified _EPTDRGLQ_ 0 0 0 nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000104972|ENST00000324602|LILRB1 nc|ENSG00000104972|Q8NHL6|LILRB1;ENSG00000104972|ENST00000324602|LILRB1 ENSG00000104972|ENST00000324602|LILRB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2303466796875 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 97.514 1 93.28 92.78 93.78 -4.2348 0 0 0 0.23366 1 18628 18628 0.12286 0 1 13097 12270;2272 8399 8402 13284 13284 -0.0148856652166387 EPTDYNNNGEF 11 Unmodified _EPTDYNNNGEF_ 0 0 0 REV__nc|ENSG00000099250|O14786-3|NRP1 REV__nc|ENSG00000099250|O14786-3|NRP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 433.88104248046875 3 433.842318 1298.50512 0.15442 6.6992E-05 -0.1974 -8.5641E-05 -0.042986 -1.8649E-05 433.84129720266543 22.347 0.20736 22.347 22.293 22.501 0 7 5 2 0 0 0 0.81822 1 3788 3788 1.2148 0 1 304920 + 13098 14630 8400 8403 13285 13285 -0.13218760088830095 EPTETMFNEY 10 Unmodified _EPTETMFNEY_ 0 0 0 REV__ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant REV__ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.765625 2 630.758086 1259.50162 NaN NaN NaN NaN NaN NaN NaN 134.79 1 129.97 129.47 130.47 -4.8175 0 0 0 0.22583 1 25949 25949 13.906 3.8321 1 + 13099 16474 8401 8404 13286 13286 -0.11775146187005703 EPTHWDFYLW 10 Unmodified _EPTHWDFYLW_ 0 0 0 REV__ENSG00000124003|ENST00000446656|MOGAT1 REV__ENSG00000124003|ENST00000446656|MOGAT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2504577636719 3 465.211906 1392.61389 NaN NaN NaN NaN NaN NaN NaN 62.269 1 62.269 61.769 62.769 0 0 0 0 2.8426 1 11957 11957 1.9275 0.021128 1 + 13100 15745 8402 8405 13287 13287 -0.06671504327846378 EPTHWDFYLW 10 Unmodified _EPTHWDFYLW_ 0 0 0 REV__ENSG00000124003|ENST00000446656|MOGAT1 REV__ENSG00000124003|ENST00000446656|MOGAT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2508544921875 3 465.211906 1392.61389 NaN NaN NaN NaN NaN NaN NaN 62.501 1 62.501 62.001 63.001 0 0 0 0 2.8426 1 12003 12003 0.26539 0 1 + 13101 15745 8402 8405 13288 13288 -0.06671504327846378 EPTHWDFYLW 10 Unmodified _EPTHWDFYLW_ 0 0 0 REV__ENSG00000124003|ENST00000446656|MOGAT1 REV__ENSG00000124003|ENST00000446656|MOGAT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25006103515625 3 465.211906 1392.61389 NaN NaN NaN NaN NaN NaN NaN 95.804 1 91.923 91.423 92.423 -3.881 0 0 0 2.8426 1 18384 18384 0.26539 0.093389 1 + 13102 15745 8402 8405 13289 13289 -0.06671504327846378 EPTPSWDGP 9 Unmodified _EPTPSWDGP_ 0 0 0 ENSG00000092098|ENST00000324103|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31 ENSG00000092098|ENST00000324103|RNF31 ENSG00000092098|ENST00000324103|RNF31 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 328.9793701171875 3 329.146902 984.418876 -0.42265 -0.00013911 0.98392 0.00032386 0.56127 0.00018474 329.14719357306814 23.181 0.2392 23.181 22.994 23.233 0 10 6 2 0 0 0 0.8825 1 3930 3930 0 0 1 307400 13103 1826 8403 8406 13290 13290 -0.07395675132852375 EPTSIHVSK 9 Unmodified _EPTSIHVSK_ 0 0 0 REV__nc|ENSG00000138434|P28290-3|ITPRID2 REV__nc|ENSG00000138434|P28290-3|ITPRID2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.180419921875 3 333.181946 996.52401 NaN NaN NaN NaN NaN NaN NaN 105.4 1 101.13 100.63 101.63 -4.2638 0 0 0 0.23508 1 20742 20742 4.5289 0.33936 1 + 13104 16461 8404 8407 13291 13291 0.025608660635725755 EPVAEEEEES 10 Unmodified _EPVAEEEEES_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 573.8731689453125 2 574.235498 1146.45644 NaN NaN NaN NaN NaN NaN NaN 168.76 1 168.76 168.26 169.26 0 0 0 0 0.22588 1 34591 34591 3.5965 0.31518 1 + 13105 14875 8405 8408 13292 13292 -0.11092673448570167 EPVAIGHS 8 Unmodified _EPVAIGHS_ 0 0 0 REV__ENST00000565367.5_1_15:55611435-55622003:+|nuORF REV__ENST00000565367.5_1_15:55611435-55622003:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.2996826171875 2 405.211235 808.407917 0.17589 7.1275E-05 -0.34548 -0.00013999 -0.16958 -6.8717E-05 405.2111157633142 34.333 0.41853 32.142 31.932 32.35 -2.1908 16 11 2 0 0 0 0.70613 1 6011 6011 13.508 4.1604 1 597610 + 13106 23108 8406 8409 13293 13293 -0.003950327164716327 EPVAIGHS 8 Unmodified _EPVAIGHS_ 0 0 0 REV__ENST00000565367.5_1_15:55611435-55622003:+|nuORF REV__ENST00000565367.5_1_15:55611435-55622003:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 405.211235 808.407917 0.17589 7.1275E-05 -0.34548 -0.00013999 -0.16958 -6.8717E-05 405.2111157633142 34.333 0.41853 32.142 31.932 32.35 -2.1908 0.090617 -0.00024632 NaN 13.508 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 597610 + 13107 23108 8406 8409 -0.003950327164716327 EPVAKKLVKAP 11 Unmodified _EPVAKKLVKAP_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2745361328125 2 590.376623 1178.73869 NaN NaN NaN NaN NaN NaN NaN 174.32 1 169.43 168.93 169.93 -4.8916 0 0 0 0.23324 1 34698 34698 5.7319 0.43497 1 + 13108 17221 8407 8410 13294 13294 0.15647412879343392 EPVEDNCINF 10 Unmodified _EPVEDNCINF_ 0 0 0 ENST00000533858.5_1_11:112021793-112034722:-|nuORF;ENST00000534225.1_1_11:112024279-112034806:-|nuORF;IL18|p.E177Rfs*9|1|0.4|ENSG00000150782|chr11:112143650-112143650|T/-|frameshift_variant;nc|ENSG00000150782|Q14116-2|IL18;ENSG00000150782|ENST00000280357|IL18 ENST00000533858.5_1_11:112021793-112034722:-|nuORF ENST00000533858.5_1_11:112021793-112034722:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2514038085938 2 590.252971 1178.49139 NaN NaN NaN NaN NaN NaN NaN 168.9 1 164.03 163.53 164.53 -4.873 0 0 0 0.22588 1 33335 33335 6.2058 0.47393 1 13109 4838 8408 8411 13295 13295 -0.0907170912159927 EPVIHFHKTAF 11 Unmodified _EPVIHFHKTAF_ 0 0 0 SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.E1445Sfs*15|1|0.09|ENSG00000133812|chr11:9808111-9808111|T/-|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2 SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 663.0215454101562 2 663.35368 1324.69281 0.42695 0.00028322 2.5156 0.0016688 2.9426 0.001952 663.3545312209884 166.7 0.10451 166.7 166.65 166.75 0 4 2 2 0 0 0 0.95337 1 33993 33993 2.9952 0.49676 1 16156000 13110 3817 8409 8412 13296 13296 0.043447676970799876 EPVLPIKRQEQ 11 Unmodified _EPVLPIKRQEQ_ 0 0 0 REV__ENSG00000146223|ENST00000493763|RPL7L1;REV__ENST00000397415.7_1_6:42847675-42848752:+|nuORF REV__ENSG00000146223|ENST00000493763|RPL7L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 669.14306640625 2 668.882801 1335.75105 1.0935 0.00073141 3.5313 0.002362 4.6248 0.0030934 668.8876045478462 170.44 0.20119 165.65 165.59 165.79 -4.7898 7 5 2 0 0 0 0.96036 1 34587 34587 2.4985 0.21571 1 6541900 + 13111 16877;21303 8410 8413 13297 13297 0.09660404551686952 EPVLSSQR 8 Unmodified _EPVLSSQR_ 0 0 0 REV__nc|ENSG00000110400|Q15223-2|NECTIN1 REV__nc|ENSG00000110400|Q15223-2|NECTIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2294616699219 2 458.248349 914.482145 -0.051157 -2.3443E-05 0.47365 0.00021705 0.4225 0.00019361 458.24854597238146 53.238 0.33844 50.143 49.967 50.306 -3.0954 11 9 2 0 0 0 8448 1 9825 9825 1.7423 0 1 479060 + 13112 23999 8411 8414 13298 13298 0.02148310375048368 EPVMTYRLHK 10 Unmodified _EPVMTYRLHK_ 0 0 0 OPHN1|p.V742Sfs*43|1|0.37|ENSG00000079482|chrX:68053746-68053747|-/G|frameshift_variant;ENSG00000079482|ENST00000355520|OPHN1 OPHN1|p.V742Sfs*43|1|0.37|ENSG00000079482|chrX:68053746-68053747|-/G|frameshift_variant OPHN1|p.V742Sfs*43|1|0.37|ENSG00000079482|chrX:68053746-68053747|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2533264160156 3 425.228902 1272.66488 NaN NaN NaN NaN NaN NaN NaN 90.866 1 87.007 86.507 87.507 -3.8595 0 0 0 0.22588 1 17781 17781 3.5871 0.26742 1 13113 1597 8412 8415 13299 13299 0.03945121445326549 EPVPHDETY 9 Unmodified _EPVPHDETY_ 0 0 0 nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7916870117188 2 543.740554 1085.46655 NaN NaN NaN NaN NaN NaN NaN 83.208 1 79.6 79.1 80.1 -3.6079 0 0 0 0.23508 1 16265 16265 7.9102 0 1 13114 3594 8413 8416 13300 13300 -0.07276020932658867 EPYAQNDCF 9 Unmodified _EPYAQNDCF_ 0 0 0 REV__PARP15|p.F664C|1|0.25|ENSG00000173200|chr3:122636054-122636054|T/G|missense_variant REV__PARP15|p.F664C|1|0.25|ENSG00000173200|chr3:122636054-122636054|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7913208007812 2 543.713482 1085.41241 0.053269 2.8963E-05 0.89687 0.00048764 0.95014 0.00051661 544.2144579610369 131.62 0.33813 126.76 126.64 126.97 -4.8527 10 9 2 0 0 0 0.87511 1 25252 25252 3.9444 0 1 3417300 + 13115 24434 8414 8417 13301 13301 -0.12687936355882812 EPYCIVSHL 9 Unmodified _EPYCIVSHL_ 0 0 0 LAMB1|p.T1709Lfs*22|3|0.29|ENSG00000091136|chr7:107924329-107924329|T/-|frameshift_variant;ENSG00000091136|ENST00000222399|LAMB1 LAMB1|p.T1709Lfs*22|3|0.29|ENSG00000091136|chr7:107924329-107924329|T/-|frameshift_variant LAMB1|p.T1709Lfs*22|3|0.29|ENSG00000091136|chr7:107924329-107924329|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 530.6829833984375 2 530.760235 1059.50592 NaN NaN NaN NaN NaN NaN NaN 172.19 1 167.4 166.9 167.9 -4.7898 0 0 0 0.23508 1 35064 35064 11.64 2.8949 1 13116 1805 8415 8418 13302 13302 -0.02145592182796463 EPYEDVGPG 9 Unmodified _EPYEDVGPG_ 0 0 0 REV__ENSG00000124215|ENST00000348616|CDH26 REV__ENSG00000124215|ENST00000348616|CDH26 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2403259277344 2 481.708722 961.402892 -0.31342 -0.00015098 0.30261 0.00014577 -0.010806 -5.2051E-06 481.70882802155734 37.864 0.34537 35.395 35.297 35.643 -2.4688 11 9 2 0 0 0 0.79204 1 7040 7040 16.942 9.6531 1 445260 + 13117 15765 8416 8419 13303 13303 -0.07935381369748029 EPYLDLPGHY 10 Unmodified _EPYLDLPGHY_ 0 0 0 REV__nc|ENSG00000086848|Q9H6U8-2|ALG9 REV__nc|ENSG00000086848|Q9H6U8-2|ALG9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.287841796875 2 602.287671 1202.56079 NaN NaN NaN NaN NaN NaN NaN 91.305 1 91.305 90.805 91.805 0 0 0 0 2.8426 1 17841 17841 0.26539 0 1 + 13118 14488 8417 8420 13304 13304 -0.03238882110531449 EPYNQTERF 9 Unmodified _EPYNQTERF_ 0 0 0 REV__SCAI|p.R561Q|1|0.27|ENSG00000173611|chr9:124952946-124952946|C/T|missense_variant REV__SCAI|p.R561Q|1|0.27|ENSG00000173611|chr9:124952946-124952946|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.1865234375 3 395.184127 1182.53055 NaN NaN NaN NaN NaN NaN NaN 50.854 1 47.972 47.472 48.472 -2.8824 0 0 0 0.23508 1 9655 9655 8.1555 0.54658 1 + 13119 24592 8418 8421 13305 13305 -0.053412407757150504 EPYQVYVS 8 Unmodified _EPYQVYVS_ 0 0 0 tr|U7SGF5|U7SGF5_FUSNUDUF4015domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02285PE=4SV=1 tr|U7SGF5|U7SGF5_FUSNUDUF4015domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02285PE=4SV=1 tr|U7SGF5|U7SGF5_FUSNUDUF4015domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02285PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 329.0381774902344 3 328.827281 983.460012 -0.78883 -0.00025939 -0.14905 -4.9012E-05 -0.93788 -0.0003084 328.82768537939694 45.952 0.34621 43.085 42.818 43.165 -2.8665 12 9 2 0 0 0 1.0248 1 8339 8339 3.5965 0 1 390470 13120 25899 8419 8422 13306 13306 -0.03237914093381278 EPYRYNQAY 9 Unmodified _EPYRYNQAY_ 0 0 0 REV__SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant REV__SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2762451171875 2 602.275095 1202.53564 NaN NaN NaN NaN NaN NaN NaN 131.91 1 127.27 126.77 127.77 -4.6399 0 0 0 0.23508 1 25997 25997 4.3292 0.73274 1 + 13121 16974 8420 8423 13307 13307 -0.057529369130861596 EPYWHGEY 8 Unmodified _EPYWHGEY_ 0 0 0 REV__nc|ENSG00000183864|Q14106-2|TOB2 REV__nc|ENSG00000183864|Q14106-2|TOB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2728271484375 2 540.724707 1079.43486 0.29045 0.00015705 0.5042 0.00027263 0.79465 0.00042969 540.7257507402117 131.52 0.10762 131.52 131.43 131.54 0 4 2 2 0 0 0 1.0147 1 25987 25987 5.2307 4.6292 1 1612900 + 13122 16614 8421 8424 13308 13308 -0.10167968895939339 EPYYLSPYDN 10 Unmodified _EPYYLSPYDN_ 0 0 0 REV__nc|ENSG00000101224|P30305-3|CDC25B REV__nc|ENSG00000101224|P30305-3|CDC25B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7730712890625 2 630.774593 1259.53463 NaN NaN NaN NaN NaN NaN NaN 15.11 1 13.888 13.388 14.388 -1.2219 0 0 0 0.22588 1 2092 2092 6.7232 0 1 + 13123 13338 8422 8425 13309 13309 -0.08475196072640756 EPYYPQQY 8 Unmodified _EPYYPQQY_ 0 0 0 ENSG00000235272|ENST00000444122|RAMACL;ENSG00000169612|ENST00000304191|RAMAC ENSG00000235272|ENST00000444122|RAMACL ENSG00000235272|ENST00000444122|RAMACL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.778076171875 2 544.24019 1086.46583 0.34224 0.00018626 0.93367 0.00050814 1.2759 0.0006944 544.2404259466994 152.47 0.42879 147.72 147.6 148.03 -4.7523 16 11 2 0 0 0 0.96284 1 30322 30322 13.508 6.2187 1 2281300 13124 5992 8423 8426 13310 13310 -0.07394815581710645 EQAAALSLT 9 Unmodified _EQAAALSLT_ 0 0 0 REV__ENSG00000106605|ENST00000265523|BLVRA REV__ENSG00000106605|ENST00000265523|BLVRA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7481689453125 2 452.242732 902.470912 0.12591 5.6943E-05 -0.00023328 -1.055E-07 0.12568 5.6838E-05 452.2426792305292 94.734 0.98126 90.543 90.054 91.035 -4.1912 77 27 4 0 0 0 0.25183 1 18055 18055 34.402 3.7652 1 21170000 + 13125 15056 8424 8427 13311 13311 0.015774882808955226 EQAAALSLT 9 Unmodified _EQAAALSLT_ 0 0 0 REV__ENSG00000106605|ENST00000265523|BLVRA REV__ENSG00000106605|ENST00000265523|BLVRA MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 452.242732 902.470912 0.080525 3.6417E-05 0.074511 3.3697E-05 0.15504 7.0114E-05 452.24270559120606 90.625 0.96041 90.625 90.115 91.076 0 0.051865 -1.3905E-05 NaN 34.402 65 26 3 NaN NaN NaN NaN 0 NaN NaN 0 15652000 + 13126 15056 8424 8427 0.015774882808955226 EQAAALSLT 9 Unmodified _EQAAALSLT_ 0 0 0 REV__ENSG00000106605|ENST00000265523|BLVRA REV__ENSG00000106605|ENST00000265523|BLVRA MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 452.242732 902.470912 -0.086267 -3.9014E-05 0.1764 7.9777E-05 0.090136 4.0763E-05 452.24277663878786 94.487 0.97894 90.496 89.932 90.91 -3.9907 -0.077188 7.8254E-05 NaN 34.402 87 27 4 NaN NaN NaN NaN 0 NaN NaN 0 23648000 + 13127 15056 8424 8427 0.015774882808955226 EQAAALSLT 9 Unmodified _EQAAALSLT_ 0 0 0 REV__ENSG00000106605|ENST00000265523|BLVRA REV__ENSG00000106605|ENST00000265523|BLVRA MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 452.242732 902.470912 0.12591 5.6943E-05 -0.00023328 -1.055E-07 0.12568 5.6838E-05 452.2426792305292 94.734 0.98126 90.543 90.054 91.035 -4.1912 -0.030541 -8.151E-05 NaN 34.402 77 27 4 NaN NaN NaN NaN 0 NaN NaN 0 21170000 + 13128 15056 8424 8427 0.015774882808955226 EQAAALSLT 9 Unmodified _EQAAALSLT_ 0 0 0 REV__ENSG00000106605|ENST00000265523|BLVRA REV__ENSG00000106605|ENST00000265523|BLVRA MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 452.242732 902.470912 -0.025773 -1.1656E-05 0.092142 4.1671E-05 0.066369 3.0015E-05 452.24270764605563 94.473 1.0672 90.629 90.128 91.195 -3.844 0.055864 2.042E-06 NaN 34.402 71 30 3 NaN NaN NaN NaN 0 NaN NaN 0 27688000 + 13129 15056 8424 8427 0.015774882808955226 EQAALHLPT 9 Unmodified _EQAALHLPT_ 0 0 0 REV__ANK3|p.K2850Rfs*29|1|0.08|ENSG00000151150|chr10:60072332-60072332|T/-|frameshift_variant;REV__ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant;REV__nc|ENSG00000029534|P16157-14|ANK1 REV__ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2648620605469 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 66.164 1 62.668 62.168 63.168 -3.4965 0 0 0 0.21469 1 12395 12395 19.257 1.1106 1 + 13130 13048;13047;23933 8425 8428 13312 13312 0.023328834091330464 EQAALVSKA 9 Unmodified _EQAALVSKA_ 0 0 0 nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-4|MTCL2;SOGA1|p.D1221Gfs*26|1|0.3|ENSG00000149639|chr20:36794420-36794421|-/C|frameshift_variant nc|ENSG00000149639|O94964-1|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2254333496094 2 458.758549 915.502546 0.35693 0.00016374 0.0049004 2.2481E-06 0.36183 0.00016599 458.7585327786132 38.599 0.46282 38.599 38.32 38.783 0 17 12 2 0 0 0 0.4398 1 7166 7166 22.658 2.2045 1 1020400 13131 4806 8426 8429 13313 13313 0.041414810348555875 EQAGTIIDSL 10 Unmodified _EQAGTIIDSL_ 0 0 0 REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6941528320312 2 523.771854 1045.52915 NaN NaN NaN NaN NaN NaN NaN 127.68 1 123.06 122.56 123.56 -4.6172 0 0 0 0.22519 1 25175 25175 22.658 2.2436 1 + 13132 19920 8427 8430 13314 13314 0.008211251355305649 EQAIFHVA 8 Unmodified _EQAIFHVA_ 0 0 0 ENSG00000186090|ENST00000428798|HTR3D;nc|ENSG00000186090|Q70Z44|HTR3D ENSG00000186090|ENST00000428798|HTR3D ENSG00000186090|ENST00000428798|HTR3D MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2327880859375 2 457.74016 913.465767 0.29183 0.00013358 1.8264 0.00083599 2.1182 0.00096958 457.74159103197866 30.915 0.17513 30.915 30.793 30.968 0 6 4 2 0 0 0 0.58432 1 5552 5552 23.148 3.7094 1 278950 13133 7033 8428 8431 13315 13315 0.005572292089368602 EQAIFHVA 8 Unmodified _EQAIFHVA_ 0 0 0 ENSG00000186090|ENST00000428798|HTR3D;nc|ENSG00000186090|Q70Z44|HTR3D ENSG00000186090|ENST00000428798|HTR3D ENSG00000186090|ENST00000428798|HTR3D MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 457.74016 913.465767 0.42028 0.00019238 2.3687 0.0010843 2.789 0.0012766 457.74172376976543 32.978 0.17449 30.762 30.633 30.808 -2.2158 -0.076564 0.00020024 NaN 23.148 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 180360 13134 7033 8428 8431 0.005572292089368602 EQAKRNHLR 9 Unmodified _EQAKRNHLR_ 0 0 0 ENSG00000092054|ENST00000355349|MYH7 ENSG00000092054|ENST00000355349|MYH7 ENSG00000092054|ENST00000355349|MYH7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3259887695312 2 576.323245 1150.63194 NaN NaN NaN NaN NaN NaN NaN 125.14 1 120.37 119.87 120.87 -4.7681 0 0 0 0.23508 1 24023 24023 8.7454 0.58988 1 13135 1822 8429 8432 13316 13316 0.06264675437500955 EQALGVLQA 9 Unmodified _EQALGVLQA_ 0 0 0 REV__PPP1R21|p.Y693Mfs*21|1|0.22|ENSG00000162869|chr2:48507373-48507373|T/-|frameshift_variant REV__PPP1R21|p.Y693Mfs*21|1|0.22|ENSG00000162869|chr2:48507373-48507373|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25872802734375 2 464.758549 927.502546 0.13784 6.4061E-05 -0.022256 -1.0344E-05 0.11558 5.3717E-05 464.75864739350766 34.854 0.48932 32.601 32.254 32.743 -2.2527 22 13 2 0 0 0 0.46882 1 6136 6136 21.537 1.0834 1 429840 + 13136 17534 8430 8433 13317 13317 0.035894810348509054 EQALMWWM 8 Unmodified _EQALMWWM_ 0 0 0 REV__ENST00000437336.1_1_1:154350783-154351305:-|nuORF REV__ENST00000437336.1_1_1:154350783-154351305:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7908935546875 2 547.743531 1093.47251 0.11045 6.0499E-05 -0.55503 -0.00030402 -0.44458 -0.00024352 547.7430958625433 89.586 2.2621 85.727 84.667 86.929 -3.8595 164 63 3 0 0 0 0.66265 1 17357 17357 18.135 1.0221 1 11470000 + 13137 21676 8431 8434 13318 13318 -0.0704891722634784 EQAPTVKR 8 Unmodified _EQAPTVKR_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;PCLO|p.Q3062Tfs*25|1|0.2|ENSG00000186472|chr7:82951405-82951406|-/G|frameshift_variant;PCLO|p.T3933Nfs*47|1|0.06|ENSG00000186472|chr7:82916188-82916189|-/T|frameshift_variant;PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant;PCLO|p.M3036Tfs*24|1|0.06|ENSG00000186472|chr7:82951481-82951482|-/G|frameshift_variant;PCLO|p.Y3007Lfs*2|1|0.28|ENSG00000186472|chr7:82951935-82951936|-/A|frameshift_variant;PCLO|p.P2408Lfs*36|1|0.44|ENSG00000186472|chr7:82953730-82953730|G/-|frameshift_variant;PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant;PCLO|p.P1234Afs*11|1|0.31|ENSG00000186472|chr7:82966089-82966090|-/T|frameshift_variant;PCLO|p.E1944Sfs*8|1|0.34|ENSG00000186472|chr7:82955124-82955124|T/-|frameshift_variant;PCLO|p.S1913Vfs*9|1|0.32|ENSG00000186472|chr7:82955216-82955216|T/-|frameshift_variant;PCLO|p.V1883Ffs*29|1|0.09|ENSG00000186472|chr7:82955307-82955307|T/-|frameshift_variant ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2399597167969 2 464.764166 927.513779 0.13913 6.4662E-05 -0.23541 -0.00010941 -0.096277 -4.4746E-05 464.7639754094573 35.001 0.47844 35.001 34.689 35.168 0 22 13 2 0 0 0 0.66066 1 6388 6388 21.747 0 1 925920 13138 7060 8432 8435 13319 13319 0.04712303128997064 EQAPTVKR 8 Unmodified _EQAPTVKR_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;PCLO|p.Q3062Tfs*25|1|0.2|ENSG00000186472|chr7:82951405-82951406|-/G|frameshift_variant;PCLO|p.T3933Nfs*47|1|0.06|ENSG00000186472|chr7:82916188-82916189|-/T|frameshift_variant;PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant;PCLO|p.M3036Tfs*24|1|0.06|ENSG00000186472|chr7:82951481-82951482|-/G|frameshift_variant;PCLO|p.Y3007Lfs*2|1|0.28|ENSG00000186472|chr7:82951935-82951936|-/A|frameshift_variant;PCLO|p.P2408Lfs*36|1|0.44|ENSG00000186472|chr7:82953730-82953730|G/-|frameshift_variant;PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant;PCLO|p.P1234Afs*11|1|0.31|ENSG00000186472|chr7:82966089-82966090|-/T|frameshift_variant;PCLO|p.E1944Sfs*8|1|0.34|ENSG00000186472|chr7:82955124-82955124|T/-|frameshift_variant;PCLO|p.S1913Vfs*9|1|0.32|ENSG00000186472|chr7:82955216-82955216|T/-|frameshift_variant;PCLO|p.V1883Ffs*29|1|0.09|ENSG00000186472|chr7:82955307-82955307|T/-|frameshift_variant ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2503662109375 2 464.764166 927.513779 0.063414 2.9472E-05 0.10363 4.8166E-05 0.16705 7.7638E-05 464.76413825120125 37.032 0.44356 34.684 34.413 34.856 -2.3479 18 12 2 0 0 0 0.66066 1 6567 6567 28.487 1.6032 1 855180 13139 7060 8432 8435 13320 13320 0.04712303128997064 EQARFEDAI 9 Unmodified _EQARFEDAI_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.266357421875 2 539.76182 1077.50909 0.31223 0.00016853 -0.10341 -5.5816E-05 0.20882 0.00011271 539.7616488849586 24.697 0.54089 24.697 24.406 24.947 0 43 15 4 0 0 0 0.5685 1 4260 4260 10.824 0 1 6377900 + 13140 18380 8433 8436 13321 13321 -0.02656625804434043 EQARIEQQKKV 11 Unmodified _EQARIEQQKKV_ 0 0 0 REV__nc|ENSG00000159625|Q8IY82-2|DRC7 REV__nc|ENSG00000159625|Q8IY82-2|DRC7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7500915527344 3 452.924647 1355.75211 -0.078162 -3.5401E-05 0.42445 0.00019224 0.34629 0.00015684 452.9247848982337 99.569 0.69887 95.436 95.094 95.793 -4.1326 50 19 3 0 0 0 0.81021 1 19502 19502 0.92553 0.080592 1 7626800 + 13141 17378 8434 8437 13322 13322 0.08846618920597393 EQCCCCEQEE 10 Unmodified _EQCCCCEQEE_ 0 0 0 ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.291259765625 2 602.174691 1202.33483 NaN NaN NaN NaN NaN NaN NaN 81.048 1 77.209 76.709 77.709 -3.8392 0 0 0 2.8426 1 15385 15385 0.0013812 0.0013812 1 13142 3875 8435 8438 13323 13323 -0.25824401670251973 EQCHVEEDY 9 Unmodified _EQCHVEEDY_ 0 0 0 REV__LRP1B|p.G110E|1|0.48|ENSG00000168702|chr2:141480410-141480410|C/T|missense_variant REV__LRP1B|p.G110E|1|0.48|ENSG00000168702|chr2:141480410-141480410|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3145751953125 2 576.219128 1150.4237 NaN NaN NaN NaN NaN NaN NaN 117.08 1 112.59 112.09 113.09 -4.486 0 0 0 0.23508 1 23080 23080 4.3292 0.38484 1 + 13143 23813 8436 8439 13324 13324 -0.14549159052398863 EQDEEPIGTDQ 11 Unmodified _EQDEEPIGTDQ_ 0 0 0 REV__IKBKB|p.R404Lfs*5|1|0.04|ENSG00000104365|chr8:42317741-42317742|-/T|frameshift_variant REV__IKBKB|p.R404Lfs*5|1|0.04|ENSG00000104365|chr8:42317741-42317742|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7684326171875 2 630.764954 1259.51536 0.10026 6.324E-05 4.1937 0.0026453 4.294 0.0027085 630.7686509523778 59.158 0.71231 59.158 58.9 59.612 0 27 19 2 0 0 0 0.63246 1 11341 11341 0.172 0 1 3691800 + 13144 14918 8437 8440 13325 13325 -0.10402197154212445 EQDFETDY 8 Unmodified _EQDFETDY_ 0 0 0 ENST00000497465.1_1_15:44065316-44067617:-|nuORF;nc|ENSG00000128886|Q9HB65-2|ELL3;ENST00000417761.2_1_15:44065316-44087594:-|nuORF;ENSG00000128886|ENST00000319359|ELL3;ENST00000467869.5_1_15:44065316-44068571:-|nuORF ENST00000497465.1_1_15:44065316-44067617:-|nuORF ENST00000497465.1_1_15:44065316-44067617:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6983032226562 2 523.701094 1045.38764 NaN NaN NaN NaN NaN NaN NaN 69.206 1 69.206 68.706 69.706 0 0 0 0 0.19492 1 13394 13394 26.341 10.494 1 13145 3547 8438 8441 13326 13326 -0.13324292957599937 EQDQAVHLWRY 11 Unmodified _EQDQAVHLWRY_ 0 0 0 ENSG00000146729|ENST00000322090|NIPSNAP2 ENSG00000146729|ENST00000322090|NIPSNAP2 ENSG00000146729|ENST00000322090|NIPSNAP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7830505371094 3 482.237114 1443.68951 NaN NaN NaN NaN NaN NaN NaN 105.98 1 101.89 101.39 102.39 -4.0913 0 0 0 0.22632 1 20382 20382 0.172 0.14579 1 13146 4667 8439 8442 13327 13327 -0.01458527147588029 EQDRVKHVI 9 Unmodified _EQDRVKHVI_ 0 0 0 REV__ENSG00000166716|ENST00000560079|ZNF592 REV__ENSG00000166716|ENST00000560079|ZNF592 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2127685546875 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 92.776 1 88.932 88.432 89.432 -3.844 0 0 0 0.19638 1 17781 17781 0.073264 0 1 + 13147 17866 8440 8443 13328 13328 0.05815335111856257 EQDYSYPDEY 10 Unmodified _EQDYSYPDEY_ 0 0 0 REV__FBLN2|p.P229Qfs*45|1|0.12|ENSG00000163520|chr3:13571036-13571036|C/-|frameshift_variant REV__FBLN2|p.P229Qfs*45|1|0.12|ENSG00000163520|chr3:13571036-13571036|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2214660644531 3 436.834941 1307.48299 0.28607 0.00012496 -0.42346 -0.00018498 -0.1374 -6.002E-05 436.83478932302495 32.162 0.48577 30.014 29.759 30.245 -2.1483 30 13 3 0 0 0 0.72703 1 5577 5577 8.4443 5.1247 1 1364900 + 13148 17580 8441 8444 13329 13329 -0.158449845572477 EQDYSYPDEY 10 Unmodified _EQDYSYPDEY_ 0 0 0 REV__FBLN2|p.P229Qfs*45|1|0.12|ENSG00000163520|chr3:13571036-13571036|C/-|frameshift_variant REV__FBLN2|p.P229Qfs*45|1|0.12|ENSG00000163520|chr3:13571036-13571036|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23529052734375 3 436.834941 1307.48299 0.28607 0.00012496 -0.42346 -0.00018498 -0.1374 -6.002E-05 436.83478932302495 32.162 0.48577 30.014 29.759 30.245 -2.1483 30 13 3 0 0 0 0.91149 1 5598 5598 3.0723 1.48 1 1364900 + 13149 17580 8441 8444 13330 13330 -0.158449845572477 EQEEDYRYE 9 Unmodified _EQEEDYRYE_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7694091796875 2 630.754389 1259.49423 NaN NaN NaN NaN NaN NaN NaN 146.52 1 141.84 141.34 142.34 -4.6868 0 0 0 0.1963 1 29063 29063 0.073264 0.043981 1 13150 5706 8442 8445 13331 13331 -0.12514162463071443 EQEEDYRYE 9 Unmodified _EQEEDYRYE_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7566528320312 2 630.754389 1259.49423 NaN NaN NaN NaN NaN NaN NaN 170.06 1 165.13 164.63 165.63 -4.9295 0 0 0 0.1963 1 33613 33613 0.073264 0 1 13151 5706 8442 8445 13332 13332 -0.12514162463071443 EQEEDYRYE 9 Unmodified _EQEEDYRYE_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.752685546875 2 630.754389 1259.49423 NaN NaN NaN NaN NaN NaN NaN 47.671 1 44.721 44.221 45.221 -2.9499 0 0 0 0.23508 1 8708 8708 1.8442 0 1 13152 5706 8442 8445 13333 13333 -0.12514162463071443 EQEEKVGP 8 Unmodified _EQEEKVGP_ 0 0 0 REV__ENST00000371370.7_1_1:54433440-54433515:+|nuORF REV__ENST00000371370.7_1_1:54433440-54433515:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2242736816406 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 51.222 1 48.339 47.839 48.839 -2.8824 0 0 0 0.22692 1 9731 9731 0.25148 0 1 + 13153 21003 8443 8446 13334 13334 -0.0261138861579866 EQEEWERS 8 Unmodified _EQEEWERS_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L REV__ENSG00000122728|ENST00000242310|TAF1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7777709960938 2 546.73326 1091.45197 0.051998 2.8429E-05 0.43908 0.00024006 0.49107 0.00026849 546.7337779931944 103.89 1.0194 99.675 99.111 100.13 -4.2183 91 29 4 0 0 0 8448 1 20472 20472 14.838 12.207 1 18807000 + 13154 15703 8444 8447 13335 13335 -0.09010093080792103 EQEFSIKEA 9 Unmodified _EQEFSIKEA_ 0 0 0 SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant;SETBP1|p.G1249Efs*3|1|0.36|ENSG00000152217|chr18:44953080-44953080|A/-|frameshift_variant;ENSG00000152217|ENST00000649279|SETBP1;nc|ENSG00000152217|Q9Y6X0-2|SETBP1;SETBP1|p.D341Mfs*2|1|0.36|ENSG00000152217|chr18:44950355-44950355|A/-|frameshift_variant;SETBP1|p.D341Rfs*23|1|0.34|ENSG00000152217|chr18:44950354-44950355|-/A|frameshift_variant;SETBP1|p.R421Dfs*23|1|0.18|ENSG00000152217|chr18:44950595-44950595|A/-|frameshift_variant SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2664794921875 2 540.764029 1079.5135 0.13417 7.2554E-05 0.83081 0.00044927 0.96498 0.00052183 540.7646807194761 52.363 0.52477 49.275 49.061 49.586 -3.0876 24 14 2 0 0 0 0.16619 1 9614 9614 41.84 1.8899 1 1714800 13155 4909 8445 8448 13336 13336 -0.02307161381509104 EQEHLDLDP 9 Unmodified _EQEHLDLDP_ 0 0 0 FAM178B|p.K398Sfs*35|1|0.13|ENSG00000168754|chr2:96960426-96960426|T/-|frameshift_variant;FAM178B|p.G341Afs*92|1|0.45|ENSG00000168754|chr2:96970764-96970764|C/-|frameshift_variant;FAM178B|p.A733Gfs*2|1|0.12|ENSG00000168754|chr2:96893950-96893951|-/T|frameshift_variant;ENSG00000168754|ENST00000490605|FAM178B FAM178B|p.K398Sfs*35|1|0.13|ENSG00000168754|chr2:96960426-96960426|T/-|frameshift_variant FAM178B|p.K398Sfs*35|1|0.13|ENSG00000168754|chr2:96960426-96960426|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7923583984375 2 548.251286 1094.48802 0.35019 0.00019199 0.013602 7.4574E-06 0.3638 0.00019945 548.2512098988636 31.22 0.35061 31.22 30.968 31.318 0 11 9 2 0 0 0 0.69192 1 5628 5628 20.454 7.9221 1 684670 13156 5930 8446 8449 13337 13337 -0.05544635903947892 EQEHLDLDP 9 Unmodified _EQEHLDLDP_ 0 0 0 FAM178B|p.K398Sfs*35|1|0.13|ENSG00000168754|chr2:96960426-96960426|T/-|frameshift_variant;FAM178B|p.G341Afs*92|1|0.45|ENSG00000168754|chr2:96970764-96970764|C/-|frameshift_variant;FAM178B|p.A733Gfs*2|1|0.12|ENSG00000168754|chr2:96893950-96893951|-/T|frameshift_variant;ENSG00000168754|ENST00000490605|FAM178B FAM178B|p.K398Sfs*35|1|0.13|ENSG00000168754|chr2:96960426-96960426|T/-|frameshift_variant FAM178B|p.K398Sfs*35|1|0.13|ENSG00000168754|chr2:96960426-96960426|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 548.251286 1094.48802 0.1683 9.227E-05 0.87667 0.00048063 1.045 0.0005729 548.2518515871 33.624 0.4184 31.306 31.043 31.461 -2.3175 0.021978 0.00070898 NaN 20.454 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 798630 13157 5930 8446 8449 -0.05544635903947892 EQEHLDLDP 9 Unmodified _EQEHLDLDP_ 0 0 0 FAM178B|p.K398Sfs*35|1|0.13|ENSG00000168754|chr2:96960426-96960426|T/-|frameshift_variant;FAM178B|p.G341Afs*92|1|0.45|ENSG00000168754|chr2:96970764-96970764|C/-|frameshift_variant;FAM178B|p.A733Gfs*2|1|0.12|ENSG00000168754|chr2:96893950-96893951|-/T|frameshift_variant;ENSG00000168754|ENST00000490605|FAM178B FAM178B|p.K398Sfs*35|1|0.13|ENSG00000168754|chr2:96960426-96960426|T/-|frameshift_variant FAM178B|p.K398Sfs*35|1|0.13|ENSG00000168754|chr2:96960426-96960426|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 548.251286 1094.48802 0.24996 0.00013704 -0.092564 -5.0748E-05 0.1574 8.6295E-05 548.2512968099294 33.473 0.38322 31.326 31.113 31.496 -2.1468 0.04208 -0.00035378 NaN 20.454 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 799940 13158 5930 8446 8449 -0.05544635903947892 EQEKKLELY 9 Unmodified _EQEKKLELY_ 0 0 0 REV__ENSG00000168418|ENST00000308251|KCNG4 REV__ENSG00000168418|ENST00000308251|KCNG4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.249267578125 2 590.316428 1178.6183 NaN NaN NaN NaN NaN NaN NaN 110.98 1 106.55 106.05 107.05 -4.4231 0 0 0 0.23508 1 21861 21861 6.7232 0.99131 1 + 13159 18024 8447 8450 13338 13338 0.03613960095049151 EQEMEIRF 8 Unmodified _EQEMEIRF_ 0 0 0 REV__nc|ENSG00000111879|Q8NB25-4|FAM184A REV__nc|ENSG00000111879|Q8NB25-4|FAM184A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2628173828125 2 541.252774 1080.491 NaN NaN NaN NaN NaN NaN NaN 142.4 1 142.4 141.9 142.9 0 0 0 0 0.21486 1 28391 28391 9.3474 1.4373 1 + 13160 15268 8448 8451 13339 13339 -0.0460308405079104 EQENFKHKR 9 Unmodified _EQENFKHKR_ 0 0 0 REV__tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1 REV__tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.2998962402344 3 405.879149 1214.61562 0.21593 8.7642E-05 -0.58981 -0.00023939 -0.37388 -0.00015175 405.8789404870423 42.237 0.6724 42.237 41.897 42.569 0 39 18 3 0 0 0 0.8825 1 7864 7864 0 0 1 1814700 + 13161 25039 8449 8452 13340 13340 0.016895494807386058 EQENFKHKR 9 Unmodified _EQENFKHKR_ 0 0 0 REV__tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1 REV__tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 405.879149 1214.61562 -0.18988 -7.7069E-05 0.090794 3.6851E-05 -0.099087 -4.0217E-05 405.87913810606506 45.157 0.61012 42.367 42.095 42.705 -2.79 0.09239 0.00015197 NaN 0 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3022900 + 13162 25039 8449 8452 0.016895494807386058 EQENFKHKR 9 Unmodified _EQENFKHKR_ 0 0 0 REV__tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1 REV__tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 405.879149 1214.61562 -0.043257 -1.7557E-05 -0.029949 -1.2155E-05 -0.073206 -2.9713E-05 405.879089753938 45.065 0.67669 42.199 41.877 42.553 -2.8653 -0.074967 4.9478E-06 NaN 0 43 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1990100 + 13163 25039 8449 8452 0.016895494807386058 EQEPNIIGKL 10 Unmodified _EQEPNIIGKL_ 0 0 0 TGM3|p.S482N|1|0.08|ENSG00000125780|chr20:2332113-2332113|G/A|missense_variant TGM3|p.S482N|1|0.08|ENSG00000125780|chr20:2332113-2332113|G/A|missense_variant TGM3|p.S482N|1|0.08|ENSG00000125780|chr20:2332113-2332113|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2151184082031 3 380.880156 1139.61864 0.019051 7.2561E-06 0.65605 0.00024988 0.6751 0.00025713 381.214961836217 39.5 0.55707 37.058 36.721 37.278 -2.4419 40 15 4 0 0 0 0.68338 1 7056 7056 12.873 0.64502 1 1793300 13164 25841 8450 8453 13341 13341 0.054413798149198556 EQEQMEEEQE 10 Unmodified _EQEQMEEEQE_ 0 0 0 REV__ENST00000567652.1_3_15:28798864-28806522:+|nuORF REV__ENST00000567652.1_3_15:28798864-28806522:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2266845703125 3 436.834723 1307.48234 0.071006 3.1018E-05 0.42938 0.00018757 0.50039 0.00021859 436.83494622504315 32.105 0.39354 29.875 29.724 30.117 -2.2305 26 10 3 0 0 0 0.41731 1 5884 5884 0.69767 0 1 1280800 + 13165 23132 8451 8454 13342 13342 -0.15910147268550645 EQEQQQEY 8 Unmodified _EQEQQQEY_ 0 0 0 REV__ENST00000506326.1_1_3:134076549-134085275:-|nuORF REV__ENST00000506326.1_1_3:134076549-134085275:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.20782470703125 3 361.152604 1080.43598 NaN NaN NaN NaN NaN NaN NaN 96.289 1 92.239 91.739 92.739 -4.0496 0 0 0 0.21486 1 18879 18879 1.8442 0.6509 1 + 13166 15359 8452 8455 13343 13343 -0.1010179931768107 EQEQQQEY 8 Unmodified _EQEQQQEY_ 0 0 0 REV__ENST00000506326.1_1_3:134076549-134085275:-|nuORF REV__ENST00000506326.1_1_3:134076549-134085275:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2748413085938 2 541.225268 1080.43598 0.28441 0.00015393 1.7464 0.00094518 2.0308 0.0010991 541.2261971961062 88.454 0.62994 84.703 84.396 85.026 -3.7501 25 17 2 0 0 0 0.96386 1 16990 16990 20.454 2.3073 1 1795800 + 13167 15359 8452 8455 13344 13344 -0.1010179931768107 EQFHLFYKKLM 11 Unmodified _EQFHLFYKKLM_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.T943Pfs*5|1|0.19|ENSG00000197943|chr16:81934513-81934513|A/-|frameshift_variant;ENST00000569929.5_1_16:81888133-81917132:+|nuORF;PLCG2|p.S445Qfs*12|1|0.36|ENSG00000197943|chr16:81900747-81900748|-/C|frameshift_variant ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3943481445312 2 742.391948 1482.76934 NaN NaN NaN NaN NaN NaN NaN 170.95 1 166.08 165.58 166.58 -4.873 0 0 0 0.22632 1 33856 33856 0.58532 0.55911 1 13168 7413 8453 8456 13345 13345 0.047268232020314827 EQFHYEYY 8 Unmodified _EQFHYEYY_ 0 0 0 nc|ENSG00000172159|A2A2Y4-5|FRMD3;ENSG00000172159|ENST00000304195|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.267822265625 2 589.743096 1177.47164 0.34487 0.00020338 -3.4585 -0.0020396 -3.1136 -0.0018362 589.7421456497108 132.81 0.56442 132.81 132.47 133.04 0 20 13 2 0 0 0 0.69887 1 26302 26302 14.582 5.2343 1 4203200 13169 6196 8454 8457 13346 13346 -0.10999717070035331 EQFIELEAT 9 Unmodified _EQFIELEAT_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9|HEATR5A REV__nc|ENSG00000129493|Q86XA9|HEATR5A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2684936523438 2 540.266404 1078.51826 0.55356 0.00029907 -0.47215 -0.00025508 0.081419 4.3988E-05 540.2662113878729 105.47 0.70834 105.47 105 105.71 0 48 19 4 0 0 0 0.46882 1 20741 20741 21.537 0 1 8599600 + 13170 15965 8455 8458 13347 13347 -0.017862772387843506 EQFIELEAT 9 Unmodified _EQFIELEAT_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9|HEATR5A REV__nc|ENSG00000129493|Q86XA9|HEATR5A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2689208984375 2 540.266404 1078.51826 -0.098238 -5.3075E-05 0.11367 6.1411E-05 0.01543 8.3364E-06 540.2664989758608 109.98 0.73853 105.53 105.2 105.93 -4.4518 48 20 3 0 0 0 0.19171 1 21130 21130 38.176 10.547 1 9410400 + 13171 15965 8455 8458 13348 13348 -0.017862772387843506 EQFIELEAT 9 Unmodified _EQFIELEAT_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9|HEATR5A REV__nc|ENSG00000129493|Q86XA9|HEATR5A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.266404 1078.51826 -0.098238 -5.3075E-05 0.11367 6.1411E-05 0.01543 8.3364E-06 540.2664989758608 109.98 0.73853 105.53 105.2 105.93 -4.4518 0.0040455 0.00034351 NaN 38.176 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 9410400 + 13172 15965 8455 8458 -0.017862772387843506 EQFIELEAT 9 Unmodified _EQFIELEAT_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9|HEATR5A REV__nc|ENSG00000129493|Q86XA9|HEATR5A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.266404 1078.51826 0.72716 0.00039286 -0.70372 -0.00038019 0.023438 1.2663E-05 540.2660950212254 109.77 0.70386 105.59 105.19 105.89 -4.1826 0.064976 -0.0005397 NaN 38.176 54 19 4 NaN NaN NaN NaN 0 NaN NaN 0 11225000 + 13173 15965 8455 8458 -0.017862772387843506 EQFKAREY 8 Unmodified _EQFKAREY_ 0 0 0 REV__nc|ENSG00000124678|Q8WWU5-3|TCP11 REV__nc|ENSG00000124678|Q8WWU5-3|TCP11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5535888671875 3 357.513696 1069.51926 -0.40436 -0.00014456 0.46297 0.00016552 0.058612 2.0955E-05 357.5138050421721 56.913 0.93723 54.018 53.511 54.448 -2.8944 62 26 3 0 0 0 0.97174 1 10983 10983 13.906 0 1 4581800 + 13174 15790 8456 8459 13349 13349 -0.012720180792030078 EQFLEAAAT 9 Unmodified _EQFLEAAAT_ 0 0 0 ENSG00000206113|ENST00000635017|CFAP99 ENSG00000206113|ENST00000635017|CFAP99 ENSG00000206113|ENST00000635017|CFAP99 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2640075683594 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 37.692 1 37.692 37.192 38.192 0 0 0 0 0.22621 1 6973 6973 15.847 4.2069 1 13175 7666 8457 8460 13350 13350 -0.024268155817367187 EQFLLKKMKRY 11 Unmodified _EQFLLKKMKRY_ 0 0 0 REV__TAOK1-VMP1|1|fusion REV__TAOK1-VMP1|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.36865234375 2 742.426322 1482.83809 NaN NaN NaN NaN NaN NaN NaN 144.82 1 140.15 139.65 140.65 -4.6694 0 0 0 0.23698 1 28690 28690 2.7352 0 1 + 13176 24771 8458 8461 13351 13351 0.11598487501737509 EQFLSRSGY 9 Unmodified _EQFLSRSGY_ 0 0 0 nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1 nc|ENSG00000101868|P09884|POLA1 nc|ENSG00000101868|P09884|POLA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7787475585938 2 543.764363 1085.51417 0.49719 0.00027036 -0.30557 -0.00016616 0.19163 0.0001042 543.7641476890013 75.415 0.61649 75.415 75.029 75.645 0 36 17 3 0 0 0 0.31728 1 14629 14629 2.8827 0 1 5552100 13177 2091 8459 8462 13352 13352 -0.025163219417891014 EQFLSRSGY 9 Unmodified _EQFLSRSGY_ 0 0 0 nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1 nc|ENSG00000101868|P09884|POLA1 nc|ENSG00000101868|P09884|POLA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7816162109375 2 543.764363 1085.51417 -0.032898 -1.7889E-05 0.061339 3.3354E-05 0.028441 1.5465E-05 543.7644245765092 79.261 0.58963 75.456 75.163 75.753 -3.8048 40 16 4 0 0 0 0.25976 1 15030 15030 6.4869 1.771 1 7324200 13178 2091 8459 8462 13353 13353 -0.025163219417891014 EQFLSRSGY 9 Unmodified _EQFLSRSGY_ 0 0 0 nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1 nc|ENSG00000101868|P09884|POLA1 nc|ENSG00000101868|P09884|POLA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.779052734375 2 543.764363 1085.51417 0.028066 1.5261E-05 0.15386 8.3661E-05 0.18192 9.8923E-05 543.7643969671366 79.093 0.59731 75.417 75.129 75.727 -3.676 47 16 4 0 0 0 0.31728 1 15092 15092 2.8827 2.0075 1 7163600 13179 2091 8459 8462 13354 13354 -0.025163219417891014 EQFNEDSGDY 10 Unmodified _EQFNEDSGDY_ 0 0 0 nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3 nc|ENSG00000292277|Q9UJ98|STAG3 nc|ENSG00000292277|Q9UJ98|STAG3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.28466796875 2 602.225465 1202.43638 NaN NaN NaN NaN NaN NaN NaN 85.632 1 81.92 81.42 82.42 -3.7117 0 0 0 2.8426 1 16363 16363 0.26539 0 1 13180 1379 8460 8463 13355 13355 -0.15674424388498664 EQGADYYGGGA 11 Unmodified _EQGADYYGGGA_ 0 0 0 ENSG00000170166|ENST00000306324|HOXD4 ENSG00000170166|ENST00000306324|HOXD4 ENSG00000170166|ENST00000306324|HOXD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7808227539062 2 544.219985 1086.42542 0.018675 1.0163E-05 -2.4828 -0.0013512 -2.4641 -0.001341 544.7183937690146 50.805 0.14243 47.753 47.677 47.82 -3.0517 5 3 2 0 0 0 0.89764 1 9354 9354 8.1555 0 1 886880 13181 6044 8461 8464 13356 13356 -0.11433781972141333 EQGEGDQQEPQ 11 Unmodified _EQGEGDQQEPQ_ 0 0 0 nc|ENSG00000168502|Q9Y4B5-2|MTCL1;MTCL1|p.P1448Afs*83|1|0.4|ENSG00000168502|chr18:8824888-8824889|-/G|frameshift_variant;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;MTCL1|p.P1841Lfs*22|1|0.05|ENSG00000168502|chr18:8826071-8826071|C/-|frameshift_variant;MTCL1|p.L1858Wfs*5|1|0.26|ENSG00000168502|chr18:8826125-8826125|C/-|frameshift_variant;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;MTCL1|p.G1084Vfs*116|1|0.23|ENSG00000168502|chr18:8798144-8798144|G/-|frameshift_variant;MTCL1|p.W1259Efs*14|1|0.09|ENSG00000168502|chr18:8813191-8813192|-/GAGCC|frameshift_variant nc|ENSG00000168502|Q9Y4B5-2|MTCL1 nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7750244140625 2 622.754921 1243.49529 NaN NaN NaN NaN NaN NaN NaN 84.051 1 80.141 79.641 80.641 -3.9093 0 0 0 0.21121 1 15975 15975 0.03141 0.0052036 1 13182 5915 8462 8465 13357 13357 -0.11671948094181062 EQGKDEKK 8 Unmodified _EQGKDEKK_ 0 0 0 ENSG00000100557|ENST00000216445|CCDC198 ENSG00000100557|ENST00000216445|CCDC198 ENSG00000100557|ENST00000216445|CCDC198 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24896240234375 2 481.251089 960.487624 0.021637 1.0413E-05 -1.1165 -0.00053734 -1.0949 -0.00052693 481.2503997935835 40.302 3.026 37.762 36.657 39.683 -2.5398 141 85 2 0 0 0 8448 1 7513 7513 0.68139 0 1 101380000 13183 1989 8463 8466 13358 13358 0.005799891668516466 EQGNRLLRFTL 11 Unmodified _EQGNRLLRFTL_ 0 0 0 REV__nc|ENSG00000196526|Q8N556|AFAP1 REV__nc|ENSG00000196526|Q8N556|AFAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.1470031738281 3 449.589487 1345.74663 -0.9421 -0.00042356 -0.065389 -2.9398E-05 -1.0075 -0.00045296 449.5894035179586 20.418 0.28246 18.783 18.64 18.922 -1.6351 12 7 2 0 0 0 0.96165 1 3142 3142 4.4062 0.81909 1 526870 + 13184 19255 8464 8467 13359 13359 0.08758940128814174 EQGNRLLRFTL 11 Unmodified _EQGNRLLRFTL_ 0 0 0 REV__nc|ENSG00000196526|Q8N556|AFAP1 REV__nc|ENSG00000196526|Q8N556|AFAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 449.589487 1345.74663 0.18014 8.0991E-05 -0.75886 -0.00034118 -0.57872 -0.00026019 449.5890541555509 18.656 0.20564 18.656 18.548 18.754 0 -0.096589 -0.0002151 NaN 4.4062 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 592370 + 13185 19255 8464 8467 0.08758940128814174 EQGNRLLRFTL 11 Unmodified _EQGNRLLRFTL_ 0 0 0 REV__nc|ENSG00000196526|Q8N556|AFAP1 REV__nc|ENSG00000196526|Q8N556|AFAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 449.589487 1345.74663 -0.31826 -0.00014309 -0.64269 -0.00028895 -0.96095 -0.00043203 449.58915065559654 20.087 0.27574 18.762 18.595 18.871 -1.3251 0.0088183 -5.8413E-05 NaN 4.4062 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 934740 + 13186 19255 8464 8467 0.08758940128814174 EQGNSLFKNI 10 Unmodified _EQGNSLFKNI_ 0 0 0 ENST00000515804.1_1_5:72853376-72858706:-|nuORF;ENST00000506130.5_1_5:72853376-72858450:-|nuORF ENST00000515804.1_1_5:72853376-72858706:-|nuORF ENST00000515804.1_1_5:72853376-72858706:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3366088867188 2 575.29857 1148.58259 -0.0084499 -4.8612E-06 0.15715 9.041E-05 0.1487 8.5549E-05 575.2986779616912 58.634 0.96843 58.634 58.105 59.074 0 86 27 5 0 0 0 0.68961 1 11282 11282 12.241 1.4411 1 136770000 13187 10792 8465 8468 13360 13360 0.014239226380595937 EQGPKFEA 8 Unmodified _EQGPKFEA_ 0 0 0 REV__ENSG00000075673|ENST00000381946|ATP12A REV__ENSG00000075673|ENST00000381946|ATP12A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7644348144531 2 453.2218 904.429047 -0.2709 -0.00012278 1.1914 0.00053997 0.9205 0.00041719 453.2224736811416 41.904 0.92729 39.21 38.583 39.51 -2.6944 44 26 3 0 0 0 0.64118 1 7848 7848 37.974 11.09 1 3239900 + 13188 14336 8466 8469 13361 13361 -0.026990674076273535 EQGQYLQQDA 10 Unmodified _EQGQYLQQDA_ 0 0 0 nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14;USP14|p.Y333Lfs*2|1|0.33|ENSG00000101557|chr18:203145-203146|-/T|frameshift_variant nc|ENSG00000101557|P54578-2|USP14 nc|ENSG00000101557|P54578-2|USP14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2501220703125 2 590.267467 1178.52038 NaN NaN NaN NaN NaN NaN NaN 146.98 1 141.87 141.37 142.37 -5.1108 0 0 0 0.22588 1 28433 28433 7.609 0.50723 1 13189 2075 8467 8470 13362 13362 -0.06173848500952772 EQHGTRAGT 9 Unmodified _EQHGTRAGT_ 0 0 0 nc|ENSG00000141519|Q4G0X9-2|CCDC40 nc|ENSG00000141519|Q4G0X9-2|CCDC40 nc|ENSG00000141519|Q4G0X9-2|CCDC40 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7318420410156 2 478.730855 955.447156 NaN NaN NaN NaN NaN NaN NaN 52.852 1 52.852 52.352 53.352 0 0 0 0 0.23508 1 10051 10051 11.64 3.7301 1 13190 12359 8468 8471 13363 13363 -0.032349324329061346 EQHLAVLRV 9 Unmodified _EQHLAVLRV_ 0 0 0 ENST00000505325.1_1_5:60642967-60643258:+|nuORF ENST00000505325.1_1_5:60642967-60643258:+|nuORF ENST00000505325.1_1_5:60642967-60643258:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2750244140625 2 532.81419 1063.61383 -0.061944 -3.3005E-05 0.80713 0.00043005 0.74519 0.00039705 533.3165512115951 70.996 0.8617 70.996 70.521 71.382 0 32 24 2 0 0 0 0.5059 1 13811 13811 19.257 8.4331 1 2678100 13191 10672 8469 8472 13364 13364 0.0845654046281652 EQIAKKKERFR 11 Unmodified _EQIAKKKERFR_ 0 0 0 REV__ENST00000593174.5_1_19:13869843-13873879:+|nuORF REV__ENST00000593174.5_1_19:13869843-13873879:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.2842712402344 3 478.284287 1431.83103 NaN NaN NaN NaN NaN NaN NaN 158.86 1 153.59 153.09 154.09 -5.2712 0 0 0 0.22632 1 30824 30824 0.0072825 0 1 + 13192 14955 8470 8473 13365 13365 0.13238890945535786 EQIHKPPD 8 Unmodified _EQIHKPPD_ 0 0 0 REV__ENSG00000164142|ENST00000435205|FHIP1A REV__ENSG00000164142|ENST00000435205|FHIP1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7662353515625 2 482.248349 962.482145 0.093723 4.5198E-05 -0.39468 -0.00019033 -0.30096 -0.00014514 482.2481406853722 53.254 0.73886 50.166 49.689 50.428 -3.0876 27 20 2 0 0 0 0.96284 1 9848 9848 4.756 0 1 844390 + 13193 17652 8471 8474 13366 13366 -0.0005968962494762309 EQIHKPPD 8 Unmodified _EQIHKPPD_ 0 0 0 REV__ENSG00000164142|ENST00000435205|FHIP1A REV__ENSG00000164142|ENST00000435205|FHIP1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7843933105469 2 482.248349 962.482145 -0.19116 -9.2188E-05 -0.50172 -0.00024195 -0.69288 -0.00033414 482.24802140268235 46.23 0.61431 43.364 42.996 43.611 -2.8666 29 17 2 0 0 0 0.96284 1 8348 8348 4.756 0 1 3487200 + 13194 17652 8471 8474 13367 13367 -0.0005968962494762309 EQIMESVKSK 10 Unmodified _EQIMESVKSK_ 0 0 0 nc|ENSG00000114107|Q8NHQ1-3|CEP70;ENST00000478673.5_1_3:138250446-138291769:-|nuORF;nc|ENSG00000114107|Q8NHQ1-2|CEP70;nc|ENSG00000114107|Q8NHQ1-5|CEP70;nc|ENSG00000114107|Q8NHQ1-4|CEP70;ENSG00000114107|ENST00000264982|CEP70 nc|ENSG00000114107|Q8NHQ1-3|CEP70 nc|ENSG00000114107|Q8NHQ1-3|CEP70 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.254638671875 2 589.807913 1177.60127 NaN NaN NaN NaN NaN NaN NaN 25.049 1 25.049 24.549 25.549 0 0 0 0 0.22588 1 4332 4332 12.241 0 1 13195 2775 8472 8475 13368 13368 0.019577162175664853 EQIRALIPE 9 Unmodified _EQIRALIPE_ 0 0 0 REV__GALNT8|p.R299H|1|0.23|ENSG00000130035|chr12:4745464-4745464|G/A|missense_variant REV__GALNT8|p.R299H|1|0.23|ENSG00000130035|chr12:4745464-4745464|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5535888671875 3 356.873113 1067.59751 -0.41267 -0.00014727 0.49178 0.0001755 0.07911 2.8232E-05 356.87322906926886 56.563 1.6918 53.668 52.999 54.69 -2.8944 120 48 3 0 0 0 0.74567 1 10983 10983 4.1895 4.1895 1 7729100 + 13196 15982 8473 8476 13369 13369 0.06641414506020737 EQISEYLSYLQ 11 Unmodified _EQISEYLSYLQ_ 0 0 0 REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22589111328125 3 458.22588 1371.65581 NaN NaN NaN NaN NaN NaN NaN 45.278 1 42.488 41.988 42.988 -2.79 0 0 0 0.22632 1 8523 8523 0.026206 0 1 + 13197 18757 8474 8477 13370 13370 -0.015149934299870438 EQITTSLQ 8 Unmodified _EQITTSLQ_ 0 0 0 REV__MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant REV__MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2299499511719 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 56.747 1 53.852 53.352 54.352 -2.8944 0 0 0 0.21039 1 10879 10879 16.942 1.1741 1 + 13198 14342 8475 8478 13371 13371 0.0033318441828669165 EQIVKSTNY 9 Unmodified _EQIVKSTNY_ 0 0 0 REV__tr|U7SU32|U7SU32_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01290PE=4SV=1 REV__tr|U7SU32|U7SU32_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01290PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2796630859375 2 541.279846 1080.54514 0.35569 0.00019253 0.17428 9.4333E-05 0.52997 0.00028686 541.2798883192773 31.624 0.32188 29.597 29.372 29.694 -2.0264 11 8 2 0 0 0 0.44932 1 5439 5439 22.736 3.4793 1 553590 + 13199 25139 8476 8479 13372 13372 0.008088313724329055 EQKAESDHC 9 Unmodified _EQKAESDHC_ 0 0 0 REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6896362304688 2 523.714013 1045.41347 NaN NaN NaN NaN NaN NaN NaN 22.539 1 21.086 20.586 21.586 -1.4535 0 0 0 0.20294 1 3597 3597 22.736 4.5899 1 + 13200 15062 8477 8480 13373 13373 -0.10741721986983066 EQKALSPAA 9 Unmodified _EQKALSPAA_ 0 0 0 REV__nc|ENSG00000005379|O95153-2|TSPOAP1 REV__nc|ENSG00000005379|O95153-2|TSPOAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2272033691406 2 457.750724 913.486896 -0.2118 -9.6953E-05 0.45696 0.00020917 0.24515 0.00011222 457.75087266171806 80.88 1.0126 77.192 76.719 77.732 -3.6879 71 28 3 0 0 0 0.31728 1 15499 15499 4.7159 1.1232 1 13817000 + 13201 13856 8478 8481 13374 13374 0.026691945178072274 EQKETSPP 8 Unmodified _EQKETSPP_ 0 0 0 REV__nc|nan|Q6PH81-2|C16orf87 REV__nc|nan|Q6PH81-2|C16orf87 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22491455078125 2 458.224539 914.434526 0.38586 0.00017681 -0.030159 -1.382E-05 0.3557 0.00016299 458.22445027359413 39.247 0.61782 39.247 38.957 39.575 0 21 17 2 0 0 0 0.58432 1 7261 7261 23.148 2.2772 1 581580 + 13202 24338 8479 8482 13375 13375 -0.026113886158100286 EQKETSPP 8 Unmodified _EQKETSPP_ 0 0 0 REV__nc|nan|Q6PH81-2|C16orf87 REV__nc|nan|Q6PH81-2|C16orf87 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2245788574219 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 41.805 1 39.199 38.699 39.699 -2.606 0 0 0 0.20294 1 7507 7507 23.148 0 1 + 13203 24338 8479 8482 13376 13376 -0.026113886158100286 EQKFLKVA 8 Unmodified _EQKFLKVA_ 0 0 0 REV__nc|ENSG00000090376|Q9Y616-2|IRAK3 REV__nc|ENSG00000090376|Q9Y616-2|IRAK3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7890625 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 26.125 1 24.343 23.843 24.843 -1.7821 0 0 0 0.21486 1 4601 4601 8.5933 1.304 1 + 13204 14546 8480 8483 13377 13377 0.07734948311235712 EQKGIYKNV 9 Unmodified _EQKGIYKNV_ 0 0 0 REV__ANKRD26|p.S1131F|1|0.45|ENSG00000107890|chr10:27035058-27035058|G/A|missense_variant REV__ANKRD26|p.S1131F|1|0.45|ENSG00000107890|chr10:27035058-27035058|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2019348144531 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 93.316 1 89.173 88.673 89.673 -4.1435 0 0 0 0.23508 1 17785 17785 2.7352 0.23671 1 + 13205 13059 8481 8484 13378 13378 0.046171279889904326 EQKGIYKNV 9 Unmodified _EQKGIYKNV_ 0 0 0 REV__ANKRD26|p.S1131F|1|0.45|ENSG00000107890|chr10:27035058-27035058|G/A|missense_variant REV__ANKRD26|p.S1131F|1|0.45|ENSG00000107890|chr10:27035058-27035058|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2021179199219 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 101.06 1 96.761 96.261 97.261 -4.297 0 0 0 0.23508 1 19336 19336 2.7352 0.23671 1 + 13206 13059 8481 8484 13379 13379 0.046171279889904326 EQKRPWEL 8 Unmodified _EQKRPWEL_ 0 0 0 ENST00000326181.10_1_16:2227562-2227895:+|nuORF ENST00000326181.10_1_16:2227562-2227895:+|nuORF ENST00000326181.10_1_16:2227562-2227895:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7793579101562 2 543.290548 1084.56654 NaN NaN NaN NaN NaN NaN NaN 49.412 1 46.531 46.031 47.031 -2.8811 0 0 0 0.21292 1 9360 9360 14.838 2.3067 1 13207 8743 8482 8485 13380 13380 0.027642611918054172 EQKSEEIEPD 10 Unmodified _EQKSEEIEPD_ 0 0 0 REV__MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant REV__MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.27197265625 2 602.272415 1202.53028 NaN NaN NaN NaN NaN NaN NaN 52.164 1 49.112 48.612 49.612 -3.0517 0 0 0 0.22583 1 9624 9624 13.906 4.5229 1 + 13208 17176 8483 8486 13381 13381 -0.0628870528621519 EQLCQQMHY 9 Unmodified _EQLCQQMHY_ 0 0 0 REV__DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant REV__DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2556762695312 2 590.249708 1178.48486 NaN NaN NaN NaN NaN NaN NaN 130.93 1 126.15 125.65 126.65 -4.7725 0 0 0 0.23508 1 25202 25202 10.824 2.9138 1 + 13209 13731 8484 8487 13382 13382 -0.09723925553976187 EQLDNQIP 8 Unmodified _EQLDNQIP_ 0 0 0 REV__ENSG00000197275|ENST00000336148|RAD54B REV__ENSG00000197275|ENST00000336148|RAD54B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73931884765625 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 123.91 1 123.91 123.41 124.41 0 0 0 0 0.19342 1 24427 24427 26.884 2.2098 1 + 13210 19318 8485 8488 13383 13383 -0.018436997244748454 EQLENSMK 8 Unmodified _EQLENSMK_ 0 0 0 BRINP3|p.E623*|1|0.15|ENSG00000162670|chr1:190098452-190098453|-/A|frameshift_variant;nc|ENSG00000162670|Q76B58-2|BRINP3;ENSG00000162670|ENST00000367462|BRINP3 BRINP3|p.E623*|1|0.15|ENSG00000162670|chr1:190098452-190098453|-/A|frameshift_variant BRINP3|p.E623*|1|0.15|ENSG00000162670|chr1:190098452-190098453|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2748107910156 2 489.731674 977.448796 0.17903 8.7677E-05 0.73217 0.00035857 0.9112 0.00044624 489.7319383557054 117.46 0.45121 117.46 117.27 117.72 0 19 12 2 0 0 0 0.55701 1 23184 23184 27.629 0 1 1602300 13211 336 8486 8489 13384 13384 -0.04083059459162541 EQLIWTAT 8 Unmodified _EQLIWTAT_ 0 0 0 REV__ENST00000528878.1_1_7:64465296-64465458:-|nuORF REV__ENST00000528878.1_1_7:64465296-64465458:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2547607421875 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 74.889 1 71.525 71.025 72.025 -3.3643 0 0 0 0.1328 1 14613 14613 39.957 11.47 1 + 13212 22730 8487 8490 13385 13385 0.00982078660570096 EQLKEPIAL 9 Unmodified _EQLKEPIAL_ 0 0 0 REV__ENSG00000174529|ENST00000367167|TMEM81 REV__ENSG00000174529|ENST00000367167|TMEM81 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 520.801513671875 2 520.802957 1039.59136 NaN NaN NaN NaN NaN NaN NaN 148.45 1 143.29 142.79 143.79 -5.1557 0 0 0 0.19512 1 28741 28741 13.535 12.08 1 + 13213 18418 8488 8491 13386 13386 0.07314896274488092 EQLKLHRTV 9 Unmodified _EQLKLHRTV_ 0 0 0 ELP6|p.F257Lfs*29|1|0.18|ENSG00000163832|chr3:47496099-47496099|A/-|frameshift_variant ELP6|p.F257Lfs*29|1|0.18|ENSG00000163832|chr3:47496099-47496099|A/-|frameshift_variant ELP6|p.F257Lfs*29|1|0.18|ENSG00000163832|chr3:47496099-47496099|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21337890625 3 375.224257 1122.65094 NaN NaN NaN NaN NaN NaN NaN 34.152 1 31.835 31.335 32.335 -2.3175 0 0 0 0.23508 1 6265 6265 7.1017 2.2047 1 13214 939 8489 8492 13387 13387 0.09452212008568495 EQLNEIRFT 9 Unmodified _EQLNEIRFT_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3377685546875 2 575.29857 1148.58259 0.21151 0.00012168 -0.21557 -0.00012402 -0.0040645 -2.3383E-06 575.2984096780143 61.905 1.04 58.666 58.24 59.28 -3.2395 97 29 5 0 0 0 0.39189 1 11593 11593 26.268 2.2476 1 91648000 + 13215 17221 8490 8493 13388 13388 0.014239226380595937 EQLNHTWLY 9 Unmodified _EQLNHTWLY_ 0 0 0 REV__DNAH17|p.D996H|1|0.27|ENSG00000187775|chr17:78532610-78532610|C/G|missense_variant REV__DNAH17|p.D996H|1|0.27|ENSG00000187775|chr17:78532610-78532610|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.29248046875 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 51.627 1 48.581 48.081 49.081 -3.0453 0 0 0 0.23508 1 9485 9485 7.9102 1.187 1 + 13216 13709 8491 8494 13389 13389 -0.021160600163966592 EQLNTYTYPYC 11 Unmodified _EQLNTYTYPYC_ 0 0 0 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 697.8007202148438 2 697.800285 1393.58602 NaN NaN NaN NaN NaN NaN NaN 56.191 1 53.015 52.515 53.515 -3.1761 0 0 0 0.23018 1 10449 10449 8.1555 0 1 + 13217 16906 8492 8495 13390 13390 -0.09503195370257345 EQLRYGTP 8 Unmodified _EQLRYGTP_ 0 0 0 nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1;AMOTL1|p.S295Pfs*26|1|0.37|ENSG00000166025|chr11:94800064-94800064|G/-|frameshift_variant;AMOTL1|p.Y334Mfs*22|1|0.32|ENSG00000166025|chr11:94800185-94800185|T/-|frameshift_variant;AMOTL1|p.P368Lfs*5|1|0.22|ENSG00000166025|chr11:94800289-94800289|C/-|frameshift_variant nc|ENSG00000166025|Q8IY63-2|AMOTL1 nc|ENSG00000166025|Q8IY63-2|AMOTL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7690124511719 2 482.248349 962.482145 -0.15305 -7.381E-05 -0.052243 -2.5194E-05 -0.2053 -9.9004E-05 482.2484717133717 52.846 0.92933 49.962 49.556 50.486 -2.8837 35 26 3 0 0 0 0.78482 1 10075 10075 25.399 0 1 957680 13218 5684 8493 8496 13391 13391 -0.0005968962495899177 EQLTATVETVI 11 Unmodified _EQLTATVETVI_ 0 0 0 REV__DOCK3|p.P1852Qfs*45|14|0.4|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant REV__DOCK3|p.P1852Qfs*45|14|0.4|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2933349609375 2 602.326993 1202.63943 NaN NaN NaN NaN NaN NaN NaN 48.206 1 45.264 44.764 45.764 -2.9421 0 0 0 0.23018 1 8797 8797 8.1555 0.24537 1 + 13219 13737 8494 8497 13392 13392 0.046219254038987856 EQLTQGASK 9 Unmodified _EQLTQGASK_ 0 0 0 ZNF543|p.I137*|1|0.07|ENSG00000178229|chr19:57327868-57327868|A/-|frameshift_variant;ENSG00000178229|ENST00000321545|ZNF543 ZNF543|p.I137*|1|0.07|ENSG00000178229|chr19:57327868-57327868|A/-|frameshift_variant ZNF543|p.I137*|1|0.07|ENSG00000178229|chr19:57327868-57327868|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2548522949219 2 481.251089 960.487624 0.11138 5.3603E-05 2.7207 0.0013093 2.832 0.0013629 481.252737571751 25.423 0.61759 23.888 23.68 24.297 -1.5342 28 17 3 0 0 0 0.31714 1 4253 4253 30.637 5.2372 1 918800 13220 6570 8495 8498 13393 13393 0.005799891668630153 EQLTSVAAP 9 Unmodified _EQLTSVAAP_ 0 0 0 REV__ENSG00000181192|ENST00000263035|DHTKD1 REV__ENSG00000181192|ENST00000263035|DHTKD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24176025390625 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 32.946 1 30.799 30.299 31.299 -2.1468 0 0 0 0.16428 1 5732 5732 28.487 9.2299 1 + 13221 18722 8496 8499 13394 13394 0.010254882809022092 EQLVVKISY 9 Unmodified _EQLVVKISY_ 0 0 0 REV__ENST00000483534.5_1_20:48699307-48713022:-|nuORF REV__ENST00000483534.5_1_20:48699307-48713022:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21026611328125 3 360.209613 1077.60701 NaN NaN NaN NaN NaN NaN NaN 84.589 1 84.589 84.089 85.089 0 0 0 0 0.19687 1 16502 16502 0.073264 0 1 + 13222 18080 8497 8500 13395 13395 0.07131182791590618 EQMETEDSEF 10 Unmodified _EQMETEDSEF_ 0 0 0 CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant;nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2 CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7532958984375 2 622.734808 1243.45506 NaN NaN NaN NaN NaN NaN NaN 83.134 1 79.526 79.026 80.026 -3.6079 0 0 0 0.22588 1 16249 16249 10.824 1.4408 1 13223 378 8498 8501 13396 13396 -0.15692630808985086 EQNCFEGMH 9 Unmodified _EQNCFEGMH_ 0 0 0 REV__TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant REV__TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7715454101562 2 547.705134 1093.39571 0.32842 0.00017988 -1.2036 -0.00065924 -0.87523 -0.00047937 547.7036905075307 132.69 0.56166 132.69 132.37 132.93 0 24 15 2 0 0 0 0.67531 1 26275 26275 7.9102 0.62092 1 5432900 + 13224 16181 8499 8502 13397 13397 -0.14724760513468027 EQPAKEVK 8 Unmodified _EQPAKEVK_ 0 0 0 REV__ENST00000396338.3_1_12:18845807-18846413:+|nuORF REV__ENST00000396338.3_1_12:18845807-18846413:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2568664550781 2 464.758549 927.502546 -0.35482 -0.00016491 0.13366 6.2119E-05 -0.22116 -0.00010279 464.7587711057563 35.385 0.6737 32.991 32.527 33.201 -2.3938 25 18 2 0 0 0 0.68128 1 6481 6481 16.942 3.0362 1 1406400 + 13225 14737 8500 8503 13398 13398 0.035894810348509054 EQPPHLTP 8 Unmodified _EQPPHLTP_ 0 0 0 ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2392578125 2 459.737617 917.460681 -0.25602 -0.0001177 0.45412 0.00020878 0.1981 9.1074E-05 459.7376433900941 56.146 0.68253 53.252 52.793 53.475 -2.8944 28 19 2 0 0 0 0.060682 1 10770 10770 85.272 39.251 1 2640200 13226 4669 8501 8504 13399 13399 -0.0013507465366728866 EQPQLHPD 8 Unmodified _EQPQLHPD_ 0 0 0 ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant;ASXL1|p.G1376Vfs*74|1|0.09|ENSG00000171456|chr20:32436834-32436834|G/-|frameshift_variant;ENSG00000171456|ENST00000375687|ASXL1 ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant ASXL1|p.S846Qfs*5|3|0.29|ENSG00000171456|chr20:32435242-32435243|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7690124511719 2 482.230156 962.445759 -0.16162 -7.7936E-05 0.88808 0.00042826 0.72647 0.00035032 482.23056115818696 53.185 0.66624 50.301 49.929 50.595 -2.8837 30 18 2 0 0 0 0.9455 1 10075 10075 11.64 0 1 1610200 13227 243 8502 8505 13400 13400 -0.03696566521659861 EQQHRKFRKRR 11 Unmodified _EQQHRKFRKRR_ 0 0 0 REV__ENSG00000187140|ENST00000371116|FOXD3 REV__ENSG00000187140|ENST00000371116|FOXD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.692138671875 3 523.637946 1567.89201 NaN NaN NaN NaN NaN NaN NaN 59.82 1 56.596 56.096 57.096 -3.2237 0 0 0 0.22632 1 11182 11182 0.00056442 0 1 + 13228 19077 8503 8506 13401 13401 0.13077840768323767 EQQHWSCE 8 Unmodified _EQQHWSCE_ 0 0 0 REV__CEP250|p.R866C|1|0.16|ENSG00000126001|chr20:35490646-35490646|C/T|missense_variant REV__CEP250|p.R866C|1|0.16|ENSG00000126001|chr20:35490646-35490646|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6778564453125 2 523.703448 1045.39234 NaN NaN NaN NaN NaN NaN NaN 121.93 1 117.24 116.74 117.74 -4.6873 0 0 0 0.21486 1 23407 23407 7.2892 0.56607 1 + 13229 13379 8504 8507 13402 13402 -0.12853687295842064 EQQHYPNDPN 10 Unmodified _EQQHYPNDPN_ 0 0 0 REV__ENSG00000136110|ENST00000377962|CNMD REV__ENSG00000136110|ENST00000377962|CNMD MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7683715820312 2 621.262716 1240.51088 0.77633 0.0004823 0.88528 0.00054999 1.6616 0.0010323 621.2633297278929 80.461 4.4475 80.461 79.651 84.099 0 328 126 6 0 0 0 0.51199 1 15580 15580 24.021 3.606 1 442300000 + 13230 16313 8505 8508 13403 13403 -0.09975616786459796 EQQKQTGP 8 Unmodified _EQQKQTGP_ 0 0 0 REV__ENSG00000177721|ENST00000616064|ANXA2R REV__ENSG00000177721|ENST00000616064|ANXA2R MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.230224609375 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 21.334 1 21.334 20.834 21.834 0 0 0 0 0.19342 1 3565 3565 26.884 1.8927 1 + 13231 18575 8506 8509 13404 13404 -0.014885665216525013 EQQKRAAV 8 Unmodified _EQQKRAAV_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2501220703125 2 465.261791 928.509028 1.1193 0.00052075 -0.96255 -0.00044784 0.15671 7.2912E-05 465.2615936184315 25.561 0.24363 23.913 23.791 24.035 -1.6482 8 6 2 0 0 0 0.9455 1 4498 4498 11.64 0 1 484930 13232 1718 8507 8510 13405 13405 0.04191418986226836 EQQLQDSYFC 10 Unmodified _EQQLQDSYFC_ 0 0 0 ENST00000525662.1_1_11:111234860-111234956:-|nuORF ENST00000525662.1_1_11:111234860-111234956:-|nuORF ENST00000525662.1_1_11:111234860-111234956:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7693481445312 2 630.763703 1259.51285 NaN NaN NaN NaN NaN NaN NaN 152.56 1 147.8 147.3 148.3 -4.7523 0 0 0 2.8426 1 30314 30314 0.0013812 0 1 13233 10900 8508 8511 13406 13406 -0.10652324092870913 EQQTLADDY 9 Unmodified _EQQTLADDY_ 0 0 0 REV__nc|ENSG859|P60507|ERVFC1 REV__nc|ENSG859|P60507|ERVFC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2838745117188 2 541.735468 1081.45638 0.65504 0.00035486 -0.44616 -0.0002417 0.20887 0.00011315 541.7351870124402 77.78 0.7303 77.78 77.461 78.191 0 31 20 2 0 0 0 0.74858 1 15136 15136 22.736 3.4793 1 2205100 + 13234 24336 8509 8512 13407 13407 -0.08108628657896588 EQQTLADDY 9 Unmodified _EQQTLADDY_ 0 0 0 REV__nc|ENSG859|P60507|ERVFC1 REV__nc|ENSG859|P60507|ERVFC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2839965820312 2 541.735468 1081.45638 -0.079133 -4.2869E-05 0.26373 0.00014287 0.18459 0.0001 541.7355073237484 81.719 0.79578 78.031 77.696 78.492 -3.6879 36 22 2 0 0 0 0.52242 1 15577 15577 22.736 0 1 3135500 + 13235 24336 8509 8512 13408 13408 -0.08108628657896588 EQQVNGQL 8 Unmodified _EQQVNGQL_ 0 0 0 ENST00000560591.5_1_15:67835673-67951132:+|nuORF;nc|ENSG00000137764|Q13163-4|MAP2K5;nc|ENSG00000137764|Q13163-2|MAP2K5;nc|ENSG00000137764|Q13163-3|MAP2K5;ENSG00000137764|ENST00000178640|MAP2K5 ENST00000560591.5_1_15:67835673-67951132:+|nuORF ENST00000560591.5_1_15:67835673-67951132:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2301940917969 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.965 1 40.359 39.859 40.859 -2.606 0 0 0 0.18898 1 7741 7741 28.487 0 1 13236 4105 8510 8513 13409 13409 -0.0148856652166387 EQQWKKIER 9 Unmodified _EQQWKKIER_ 0 0 0 REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7593994140625 2 622.840936 1243.66732 NaN NaN NaN NaN NaN NaN NaN 83.517 1 79.909 79.409 80.409 -3.6079 0 0 0 0.20628 1 16325 16325 21.747 2.4897 1 + 13237 18795 8511 8514 13410 13410 0.055232931746331815 EQQWKKIER 9 Unmodified _EQQWKKIER_ 0 0 0 REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant REV__TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7761840820312 2 622.840936 1243.66732 NaN NaN NaN NaN NaN NaN NaN 83.559 1 79.951 79.451 80.451 -3.6079 0 0 0 0.20628 1 16334 16334 21.747 2.4897 1 + 13238 18795 8511 8514 13411 13411 0.055232931746331815 EQREAMKPHAL 11 Unmodified _EQREAMKPHAL_ 0 0 0 REV__ENST00000523640.1_1_8:75262678-75272386:+|nuORF REV__ENST00000523640.1_1_8:75262678-75272386:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2280578613281 3 437.227561 1308.66085 0.12197 5.333E-05 -0.12416 -5.4287E-05 -0.0021868 -9.5614E-07 437.2275460573203 35.337 0.42071 33.084 32.846 33.266 -2.2527 16 11 2 0 0 0 0.67398 1 6255 6255 13.519 8.116 1 777490 + 13239 22668 8512 8515 13412 13412 0.01887031951650897 EQREAMKPHAL 11 Unmodified _EQREAMKPHAL_ 0 0 0 REV__ENST00000523640.1_1_8:75262678-75272386:+|nuORF REV__ENST00000523640.1_1_8:75262678-75272386:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2274169921875 3 437.227561 1308.66085 0.1485 6.4929E-05 -0.084386 -3.6896E-05 0.064115 2.8033E-05 437.2274949515643 35.295 0.59048 33.018 32.761 33.352 -2.2766 23 16 2 0 0 0 0.76282 1 6219 6219 7.4771 1.6936 1 837360 + 13240 22668 8512 8515 13413 13413 0.01887031951650897 EQRKWFYRRLF 11 Unmodified _EQRKWFYRRLF_ 0 0 0 REV__ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant REV__ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7722778320312 3 543.631798 1627.87356 NaN NaN NaN NaN NaN NaN NaN 28.556 1 26.801 26.301 27.301 -1.7552 0 0 0 0.23698 1 4826 4826 0.094841 0 1 + 13241 12902 8513 8516 13414 13414 0.08474286073760595 EQRNFSLSV 9 Unmodified _EQRNFSLSV_ 0 0 0 GIGYF1|p.L111Wfs*234|1|0.42|ENSG00000146830|chr7:100687547-100687547|G/-|frameshift_variant;GIGYF1|p.G270Efs*75|1|0.29|ENSG00000146830|chr7:100686319-100686319|C/-|frameshift_variant;ENSG00000146830|ENST00000678049|GIGYF1 GIGYF1|p.L111Wfs*234|1|0.42|ENSG00000146830|chr7:100687547-100687547|G/-|frameshift_variant GIGYF1|p.L111Wfs*234|1|0.42|ENSG00000146830|chr7:100687547-100687547|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2801513671875 2 540.277638 1078.54072 0.28084 0.00015173 -0.23739 -0.00012826 0.043449 2.3474E-05 540.2774847301364 34.929 0.47844 34.929 34.689 35.168 0 40 13 4 0 0 0 0.60061 1 6440 6440 13.042 0 1 9601800 13242 4672 8514 8517 13415 13415 0.004593669495079666 EQRNRGHF 8 Unmodified _EQRNRGHF_ 0 0 0 nc|ENSG00000181722|Q9HC78-2|ZBTB20;ZBTB20|p.P692Cfs*33|1|0.42|ENSG00000181722|chr3:114339156-114339157|GG/-|frameshift_variant;ZBTB20|p.P692Lfs*43|20|0.32|ENSG00000181722|chr3:114339156-114339156|G/-|frameshift_variant;ENSG00000181722|ENST00000675478|ZBTB20 nc|ENSG00000181722|Q9HC78-2|ZBTB20 nc|ENSG00000181722|Q9HC78-2|ZBTB20 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2583618164062 2 522.260114 1042.50567 NaN NaN NaN NaN NaN NaN NaN 119.92 1 115.39 114.89 115.89 -4.5221 0 0 0 0.21486 1 23645 23645 12.532 1.7076 1 13243 6737 8515 8518 13416 13416 -0.013878310677682748 EQRPRKAWAWR 11 Unmodified _EQRPRKAWAWR_ 0 0 0 ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.403076171875 2 742.405101 1482.79565 NaN NaN NaN NaN NaN NaN NaN 161.9 1 156.75 156.25 157.25 -5.1438 0 0 0 0.23429 1 31442 31442 4.897 1.5774 1 13244 4252 8516 8519 13417 13417 0.0735627320839285 EQRRKELQFG 10 Unmodified _EQRRKELQFG_ 0 0 0 REV__ENST00000177694.1_1_17:45822981-45823056:+|nuORF REV__ENST00000177694.1_1_17:45822981-45823056:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 646.0691528320312 2 645.849293 1289.68403 NaN NaN NaN NaN NaN NaN NaN 8.938 1 8.938 8.438 9.438 0 0 0 0 0.22588 1 984 984 0.40072 0 1 + 13245 19985 8517 8520 13418 13418 0.050777940605939875 EQRRLWRWLEK 11 Unmodified _EQRRLWRWLEK_ 0 0 0 ENST00000494373.1_1_2:54014190-54014463:+|nuORF ENST00000494373.1_1_2:54014190-54014463:+|nuORF ENST00000494373.1_1_2:54014190-54014463:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 400.3499450683594 4 400.727121 1598.87938 -0.59397 -0.00023802 1.3966 0.00055967 0.80267 0.00032165 400.9783576225044 50.477 0.71967 47.425 47.064 47.784 -3.0517 60 20 4 0 0 0 0.96201 1 9337 9337 2.4348 1.9803 1 1470400 13246 10557 8518 8521 13419 13419 0.10389384585459993 EQRRRHVWHHR 11 Unmodified _EQRRRHVWHHR_ 0 0 0 REV__ENSG00000157680|ENST00000614521|DGKI REV__ENSG00000157680|ENST00000614521|DGKI MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28125 3 532.954157 1595.84064 0.75294 0.00040128 -1.6631 -0.00088634 -0.91013 -0.00048506 532.9522132677445 117.16 0.10653 112.58 112.5 112.61 -4.5815 4 2 2 0 0 0 0.80759 1 22465 22465 2.6312 2.1253 1 420100 + 13247 17305 8519 8522 13420 13420 0.06655516794307914 EQRRRLLRN 9 Unmodified _EQRRRLLRN_ 0 0 0 ENST00000525370.5_1_19:50310410-50314932:-|nuORF;nc|ENSG00000010361|Q9BT04-3|FUZ;ENSG00000010361|ENST00000313777|FUZ;ENST00000534138.1_1_19:50311551-50312077:-|nuORF;nc|ENSG00000010361|Q9BT04-2|FUZ ENST00000525370.5_1_19:50310410-50314932:-|nuORF ENST00000525370.5_1_19:50310410-50314932:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.2350158691406 3 414.249688 1239.72723 NaN NaN NaN NaN NaN NaN NaN 80.046 1 76.535 76.035 77.035 -3.5102 0 0 0 0.23508 1 15632 15632 10.8 0.64894 1 13248 1063 8520 8523 13421 13421 0.11696028628557542 EQRRRRRRRPR 11 Unmodified _EQRRRRRRRPR_ 0 0 0 REV__ENST00000514738.5_1_5:31193871-31267519:+|nuORF REV__ENST00000514738.5_1_5:31193871-31267519:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.367919921875 2 811.49397 1620.97339 NaN NaN NaN NaN NaN NaN NaN 168 1 163.05 162.55 163.55 -4.948 0 0 0 0.23698 1 33095 33095 0.23584 0.23584 1 + 13249 22579 8521 8524 13422 13422 0.18773961250940374 EQRSTQVRVT 10 Unmodified _EQRSTQVRVT_ 0 0 0 REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.296142578125 2 602.32565 1202.63675 NaN NaN NaN NaN NaN NaN NaN 95.661 1 91.611 91.111 92.111 -4.0496 0 0 0 0.22588 1 18753 18753 13.042 2.2185 1 + 13250 12982 8522 8525 13423 13423 0.04353514789613655 EQRVEVTECS 10 Unmodified _EQRVEVTECS_ 0 0 0 nc|ENSG00000128052|P35968-2|KDR;nc|ENSG00000128052|P35968-3|KDR;KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant;ENSG00000128052|ENST00000263923|KDR;KDR|p.L371Pfs*2|1|0.41|ENSG00000128052|chr4:55110546-55110547|-/G|frameshift_variant nc|ENSG00000128052|P35968-2|KDR nc|ENSG00000128052|P35968-2|KDR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2709350585938 2 590.269152 1178.52375 NaN NaN NaN NaN NaN NaN NaN 52.051 1 52.051 51.551 52.551 0 0 0 0 0.14075 1 9887 9887 38.176 3.7738 1 13251 3507 8523 8526 13424 13424 -0.05836921718582744 EQRVEVTECS 10 Unmodified _EQRVEVTECS_ 0 0 0 nc|ENSG00000128052|P35968-2|KDR;nc|ENSG00000128052|P35968-3|KDR;KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant;ENSG00000128052|ENST00000263923|KDR;KDR|p.L371Pfs*2|1|0.41|ENSG00000128052|chr4:55110546-55110547|-/G|frameshift_variant nc|ENSG00000128052|P35968-2|KDR nc|ENSG00000128052|P35968-2|KDR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2669067382812 2 590.269152 1178.52375 NaN NaN NaN NaN NaN NaN NaN 55.281 1 52.146 51.646 52.646 -3.1352 0 0 0 0.14075 1 10212 10212 38.176 3.7738 1 13252 3507 8523 8526 13425 13425 -0.05836921718582744 EQRYKTVY 8 Unmodified _EQRYKTVY_ 0 0 0 REV__ENSG00000130827|ENST00000369682|PLXNA3 REV__ENSG00000130827|ENST00000369682|PLXNA3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7794189453125 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 134.69 1 129.81 129.31 130.31 -4.8726 0 0 0 0.23107 1 25871 25871 0.62683 0.50396 1 + 13253 16035 8524 8527 13426 13426 0.01120554954900399 EQSDPTHT 8 Unmodified _EQSDPTHT_ 0 0 0 REV__nc|ENSG00000115155|Q9HC10-3|OTOF REV__nc|ENSG00000115155|Q9HC10-3|OTOF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2254333496094 2 457.696146 913.377739 0.38208 0.00017488 -1.2102 -0.0005539 -0.82811 -0.00037902 457.6958941010782 38.836 1.1609 38.836 38.211 39.372 0 75 32 3 0 0 0 0.71273 2 7166 7166;7216 12.532 0.89125 1 2802900 + 13254 24006 8525 8528 13427;13428 13427 -0.08241436172340855 EQSIDQLRSQ 10 Unmodified _EQSIDQLRSQ_ 0 0 0 nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128;CEP128|p.I749Ffs*9|1|0.42|ENSG00000100629|chr14:80778013-80778013|T/-|frameshift_variant;nc|ENSG00000100629|Q6ZU80-3|CEP128;CEP128|p.K414Nfs*34|2|0.18|ENSG00000100629|chr14:80793078-80793078|T/-|frameshift_variant;ENST00000554298.5_1_14:81372269-81405743:-|nuORF nc|ENSG00000100629|Q6ZU80-1|CEP128 nc|ENSG00000100629|Q6ZU80-1|CEP128 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3018798828125 2 602.301841 1202.58913 0.33675 0.00020282 0.03178 1.9141E-05 0.36853 0.00022196 602.3018279938766 24.055 0.52555 22.52 22.259 22.785 -1.5342 44 14 4 0 0 0 0.61548 1 3941 3941 18.373 4.7582 1 11015000 13255 1999 8526 8529 13429 13429 -0.004061842012333727 EQSLFLSVR 9 Unmodified _EQSLFLSVR_ 0 0 0 nc|ENSG00000211779|A0A0B4J249|TRAV5 nc|ENSG00000211779|A0A0B4J249|TRAV5 nc|ENSG00000211779|A0A0B4J249|TRAV5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 83.498 1 79.799 79.299 80.299 -3.6985 0 0 0 0.23508 1 15939 15939 9.544 0 1 13256 12577 8527 8530 13430 13430 0.0461712798901317 EQSLFLSVR 9 Unmodified _EQSLFLSVR_ 0 0 0 nc|ENSG00000211779|A0A0B4J249|TRAV5 nc|ENSG00000211779|A0A0B4J249|TRAV5 nc|ENSG00000211779|A0A0B4J249|TRAV5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 83.839 1 80.14 79.64 80.64 -3.6985 0 0 0 0.23508 1 16012 16012 9.544 0.56773 1 13257 12577 8527 8530 13431 13431 0.0461712798901317 EQSMLAVLA 9 Unmodified _EQSMLAVLA_ 0 0 0 REV__ENSG00000183208|ENST00000329600|GDPGP1 REV__ENSG00000183208|ENST00000329600|GDPGP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2546081542969 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 57.476 1 54.581 54.081 55.081 -2.8944 0 0 0 0.13613 1 11030 11030 32.305 3.2239 1 + 13258 18824 8528 8531 13432 13432 0.013190054429287557 EQSSSMKAAQ 10 Unmodified _EQSSSMKAAQ_ 0 0 0 REV__DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant REV__DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2791137695312 2 533.745313 1065.47607 1.0637 0.00056773 -0.97776 -0.00052188 0.085918 4.5858E-05 533.7447013454016 24.371 0.48773 22.723 22.438 22.926 -1.6482 15 9 2 0 0 0 0.87854 1 4233 4233 9.3831 5.4387 1 565490 + 13259 13752 8529 8532 13433 13433 -0.05404575918782939 EQSTSYSL 8 Unmodified _EQSTSYSL_ 0 0 0 REV__ENSG00000148468|ENST00000378116|FAM171A1 REV__ENSG00000148468|ENST00000378116|FAM171A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2340087890625 2 457.708722 913.402892 0.017777 8.1368E-06 0.40314 0.00018452 0.42091 0.00019266 457.7090724970337 85.259 0.16853 81.547 81.463 81.632 -3.7117 5 4 2 0 0 0 0.96284 1 16297 16297 8.5933 0 1 273090 + 13260 16977 8530 8533 13434 13434 -0.05727381369763407 EQTCPAPQEEE 11 Unmodified _EQTCPAPQEEE_ 0 0 0 ADIPOR1|p.V56A|1|0.22|ENSG00000159346|chr1:202948395-202948395|A/G|missense_variant ADIPOR1|p.V56A|1|0.22|ENSG00000159346|chr1:202948395-202948395|A/G|missense_variant ADIPOR1|p.V56A|1|0.22|ENSG00000159346|chr1:202948395-202948395|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.756591796875 2 630.756075 1259.4976 NaN NaN NaN NaN NaN NaN NaN 44.014 1 44.014 43.514 44.514 0 0 0 0 0.23151 1 8249 8249 7.1017 1.3699 1 13261 84 8531 8534 13435 13435 -0.12177235680701415 EQTISTSY 8 Unmodified _EQTISTSY_ 0 0 0 REV__ENST00000589180.5_1_18:32650165-32677494:+|nuORF REV__ENST00000589180.5_1_18:32650165-32677494:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2503662109375 2 464.716547 927.418542 0.064333 2.9897E-05 0.092399 4.2939E-05 0.15673 7.2836E-05 464.7165091705476 36.959 0.75228 34.611 34.311 35.063 -2.3479 49 21 3 0 0 0 0.58903 1 6567 6567 30.225 0 1 2648100 + 13262 17895 8532 8535 13436 13436 -0.0480709485270836 EQTLFAVTA 9 Unmodified _EQTLFAVTA_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2736511230469 2 490.258382 978.502212 -0.21504 -0.00010543 0.48031 0.00023547 0.26527 0.00013005 490.2586139633814 38.565 0.38952 36.016 35.802 36.192 -2.5491 22 10 3 0 0 0 0.19311 1 7136 7136 37.974 1.847 1 2560300 13263 3540 8533 8536 13437 13437 0.012100613149982564 EQTLFAVTA 9 Unmodified _EQTLFAVTA_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2582702636719 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 38.741 1 36.192 35.692 36.692 -2.5491 0 0 0 0.17061 1 7189 7189 27.629 0.74515 1 13264 3540 8533 8536 13438 13438 0.012100613149982564 EQTLISMPY 9 Unmodified _EQTLISMPY_ 0 0 0 ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2649536132812 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 90.953 1 86.858 86.358 87.358 -4.0946 0 0 0 0.23508 1 17329 17329 12.532 0 1 13265 1142 8534 8537 13439 13439 -0.02089029248213592 EQTLLLFSL 9 Unmodified _EQTLLLFSL_ 0 0 0 ENST00000378898.8_1_15:100871134-100879285:-|nuORF ENST00000378898.8_1_15:100871134-100879285:-|nuORF ENST00000378898.8_1_15:100871134-100879285:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2838134765625 2 532.305332 1062.59611 0.9732 0.00051804 -1.0683 -0.00056865 -0.095075 -5.0609E-05 532.3047504684738 120.19 1.1326 115.54 114.81 115.94 -4.645 93 31 4 0 0 0 0.62102 1 22983 22983 11.64 0 1 19534000 13266 9288 8535 8538 13440 13440 0.0673178041729443 EQTVLVRLRF 10 Unmodified _EQTVLVRLRF_ 0 0 0 REV__ENST00000557665.5_1_14:20801167-20801251:-|nuORF REV__ENST00000557665.5_1_14:20801167-20801251:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7770385742188 2 630.874779 1259.73501 NaN NaN NaN NaN NaN NaN NaN 85.439 1 81.53 81.03 82.03 -3.9093 0 0 0 0.22588 1 16249 16249 6.7232 0 1 + 13267 23014 8536 8539 13441 13441 0.11552743105448826 EQVEHDDDY 9 Unmodified _EQVEHDDDY_ 0 0 0 REV__sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 REV__sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3194580078125 2 575.220182 1148.42581 0.50674 0.00029149 -0.91567 -0.00052671 -0.40893 -0.00023522 575.2195885186258 82.687 0.7533 82.687 82.361 83.114 0 54 21 3 0 0 0 0.6171 1 16182 16182 0.40827 0.2854 1 12906000 + 13268 24710 8537 8540 13442 13442 -0.14246407042946885 EQVEPTPED 9 Unmodified _EQVEPTPED_ 0 0 0 nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;nc|ENSG00000242265|Q86TG7-2|PEG10;nc|ENSG00000242265|Q86TG7-3|PEG10;nc|ENSG00000242265|Q86TG7-5|PEG10 nc|ENSG00000242265|Q86TG7|PEG10 nc|ENSG00000242265|Q86TG7|PEG10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2761840820312 2 522.230019 1042.44548 0.25405 0.00013267 -0.51004 -0.00026636 -0.25599 -0.00013369 522.2298463419642 36.693 1.4745 36.693 35.999 37.473 0 141 41 5 0 0 0 0.44932 1 6699 6699 22.736 4.5899 1 257840000 13269 7865 8538 8541 13443 13443 -0.07404031032183411 EQVKDLTKY 9 Unmodified _EQVKDLTKY_ 0 0 0 ENSG00000090565|ENST00000262305|RAB11FIP3;nc|ENSG00000090565|O75154-3|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20501708984375 3 375.20464 1122.59209 -0.49927 -0.00018733 0.2092 7.8493E-05 -0.29007 -0.00010884 375.5388033410782 61.411 0.13702 58.171 58.103 58.24 -3.2395 5 3 2 0 0 0 0.68708 1 11505 11505 7.1017 0 1 299730 13270 1788 8539 8542 13444 13444 0.035696909235639396 EQVLAKVKR 9 Unmodified _EQVLAKVKR_ 0 0 0 nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2;SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant;SCFD2|p.G51Vfs*27|1|0.27|ENSG00000184178|chr4:53365790-53365790|C/-|frameshift_variant nc|ENSG00000184178|Q8WU76-2|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5610656738281 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 88.627 1 84.834 84.334 85.334 -3.7926 0 0 0 0.1888 1 17340 17340 0.029283 0 1 13271 6892 8540 8543 13445 13445 0.1287340001395023 EQVLAKVKR 9 Unmodified _EQVLAKVKR_ 0 0 0 nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2;SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant;SCFD2|p.G51Vfs*27|1|0.27|ENSG00000184178|chr4:53365790-53365790|C/-|frameshift_variant nc|ENSG00000184178|Q8WU76-2|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5606689453125 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 88.854 1 85.062 84.562 85.562 -3.7926 0 0 0 0.1888 1 17383 17383 0.029283 0 1 13272 6892 8540 8543 13446 13446 0.1287340001395023 EQVLAKVKR 9 Unmodified _EQVLAKVKR_ 0 0 0 nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2;SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant;SCFD2|p.G51Vfs*27|1|0.27|ENSG00000184178|chr4:53365790-53365790|C/-|frameshift_variant nc|ENSG00000184178|Q8WU76-2|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5608825683594 3 357.560869 1069.66078 0.39398 0.00014087 -0.54719 -0.00019565 -0.15321 -5.4782E-05 357.56059131893574 88.934 0.44801 84.938 84.736 85.184 -3.9953 15 12 2 0 0 0 0.2932 3 16978 16925;16927;16978 10.151 5.2536 1 499780 13273 6892 8540 8543 13447;13448;13449 13449 0.1287340001395023 EQVLQQKEHMI 11 Unmodified _EQVLQQKEHMI_ 0 0 0 IFI35|p.T101M|1|0.12|ENSG00000068079|chr17:43013300-43013300|C/T|missense_variant IFI35|p.T101M|1|0.12|ENSG00000068079|chr17:43013300-43013300|C/T|missense_variant IFI35|p.T101M|1|0.12|ENSG00000068079|chr17:43013300-43013300|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.53179931640625 3 461.574738 1381.70238 NaN NaN NaN NaN NaN NaN NaN 39.14 1 36.698 36.198 37.198 -2.4419 0 0 0 0.22503 1 6983 6983 12.228 0 1 13274 11934 8541 8544 13450 13450 0.026801679202890227 EQVPRSPVIK 10 Unmodified _EQVPRSPVIK_ 0 0 0 ENSG00000171813|ENST00000305233|PWWP2B;nc|ENSG00000171813|Q6NUJ5-2|PWWP2B ENSG00000171813|ENST00000305233|PWWP2B ENSG00000171813|ENST00000305233|PWWP2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.322509765625 2 576.840405 1151.66626 0.25056 0.00014453 -3.107 -0.0017922 -2.8564 -0.0016477 576.83933038015 62.294 0.52549 58.924 58.816 59.341 -3.3694 14 14 2 0 0 0 0.4942 1 11603 11603 24.991 2.2547 1 2324800 13275 6175 8542 8545 13451 13451 0.09649078805750833 EQVRLHWWWPK 11 Unmodified _EQVRLHWWWPK_ 0 0 0 REV__nc|ENSG00000160200|P35520-2|CBS REV__nc|ENSG00000160200|P35520-2|CBS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2660522460938 3 522.277244 1563.8099 NaN NaN NaN NaN NaN NaN NaN 136.75 1 132.11 131.61 132.61 -4.6399 0 0 0 0.22632 1 26984 26984 1.4551 1.2831 1 + 13276 17402 8543 8546 13452 13452 0.05054925636682128 EQVRLTTTP 9 Unmodified _EQVRLTTTP_ 0 0 0 REV__ZBTB14|p.K387Sfs*18|1|0.29|ENSG00000198081|chr18:5291048-5291048|T/-|frameshift_variant REV__ZBTB14|p.K387Sfs*18|1|0.29|ENSG00000198081|chr18:5291048-5291048|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2631225585938 2 522.787838 1043.56112 0.53756 0.00028103 -0.52615 -0.00027507 0.011412 5.9662E-06 522.7875561245423 31.663 0.80839 29.515 29.091 29.9 -2.1483 48 22 3 0 0 0 0.8372 1 5406 5406 8.7454 0 1 937390 + 13277 19388 8544 8547 13453 13453 0.04108537609317864 EQVSSLGDGPP 11 Unmodified _EQVSSLGDGPP_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7796630859375 2 543.259111 1084.50367 0.24175 0.00013133 -0.80506 -0.00043736 -0.56331 -0.00030602 543.7573516657125 81.05 0.34691 77.493 77.308 77.655 -3.557 10 9 2 0 0 0 0.64855 1 15831 15831 15.248 2.7169 1 790620 13278 2300 8545 8548 13454 13454 -0.0352034938689485 EQWIRAKY 8 Unmodified _EQWIRAKY_ 0 0 0 ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;nc|ENSG00000184060|Q9NPF8-2|ADAP2;ENSG00000184060|ENST00000330889|ADAP2 ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7741088867188 2 547.293091 1092.57163 0.1782 9.7528E-05 -4.1896 -0.002293 -4.0114 -0.0021954 547.2902303475049 40.287 0.10989 37.797 37.721 37.83 -2.4896 4 2 2 0 0 0 1.0011 1 7213 7213 1.8442 0 1 912820 13279 68 8546 8549 13455 13455 0.029045650544276214 EQWRDMEA 8 Unmodified _EQWRDMEA_ 0 0 0 REV__ENSG00000215193|ENST00000399744|PEX26 REV__ENSG00000215193|ENST00000399744|PEX26 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2706909179688 2 532.726923 1063.43929 0.67707 0.00036069 -0.008128 -4.33E-06 0.66894 0.00035636 532.7268293170315 28.651 0.452 26.896 26.7 27.152 -1.7552 20 12 3 0 0 0 0.96284 1 4850 4850 13.508 4.1604 1 640260 + 13280 19684 8547 8550 13456 13456 -0.08988827744701666 EQYEALAEK 9 Unmodified _EQYEALAEK_ 0 0 0 CON__P08730-1 CON__P08730-1 CON__P08730-1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2662353515625 2 540.764029 1079.5135 0.016627 8.9913E-06 1.1109 0.00060073 1.1275 0.00060972 540.7646245253703 52.126 0.40948 49.244 49.004 49.414 -2.8824 20 11 2 0 0 0 0.33094 1 9884 9884 29.841 0 1 2094400 + 13281 662 8548 8551 13457 13457 -0.02307161381554579 EQYELEPPD 9 Unmodified _EQYELEPPD_ 0 0 0 REV__IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant REV__IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 560.2477416992188 2 560.245669 1118.47678 NaN NaN NaN NaN NaN NaN NaN 42.559 1 39.84 39.34 40.34 -2.7191 0 0 0 0.23508 1 7964 7964 11.64 0 1 + 13282 23648 8549 8552 13458 13458 -0.07771457998069309 EQYEVNYKK 9 Unmodified _EQYEVNYKK_ 0 0 0 REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2874755859375 2 600.798403 1199.58225 0.64679 0.00038859 -0.19796 -0.00011893 0.44884 0.00026966 600.7982144879778 112.88 0.84108 108.6 108.18 109.02 -4.2725 76 23 4 0 0 0 0.5428 1 21691 21691 4.897 0 1 15540000 + 13283 16441 8550 8553 13459 13459 -0.009554970818271613 EQYHFRRFRQR 11 Unmodified _EQYHFRRFRQR_ 0 0 0 REV__ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant REV__ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2706909179688 3 541.618552 1621.83383 0.49854 0.00027002 0.84047 0.00045521 1.339 0.00072523 541.6191620036261 41.254 0.59313 41.254 40.954 41.547 0 22 16 2 0 0 0 0.89134 1 7701 7701 0.094841 0.087559 1 1371100 + 13284 16565 8551 8554 13460 13460 0.04778159123043224 EQYIHENY 8 Unmodified _EQYIHENY_ 0 0 0 ENST00000460132.5_1_7:100853286-100853899:-|nuORF;ENSG00000106397|ENST00000223127|PLOD3 ENST00000460132.5_1_7:100853286-100853899:-|nuORF ENST00000460132.5_1_7:100853286-100853899:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7696533203125 2 548.240721 1094.46689 0.65843 0.00036098 1.3358 0.00073234 1.9942 0.0010933 548.2414468752377 21.449 0.21383 19.975 19.912 20.125 -1.4742 8 5 2 0 0 0 0.44459 1 3634 3634 25.399 2.663 1 464350 13285 2381 8552 8555 13461 13461 -0.0765660121280689 EQYRHSHH 8 Unmodified _EQYRHSHH_ 0 0 0 REV__PRPF40B|p.M34Cfs*29|3|0.24|ENSG00000110844|chr12:49631475-49631475|C/-|frameshift_variant REV__PRPF40B|p.M34Cfs*29|3|0.24|ENSG00000110844|chr12:49631475-49631475|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7698364257812 2 547.249746 1092.48494 -0.62288 -0.00034087 -0.25664 -0.00014045 -0.87952 -0.00048132 547.2495921561136 21.521 1.1429 19.8 19.353 20.496 -1.7211 119 32 5 0 0 0 0.57473 1 3401 3401 19.257 19.257 1 29244000 + 13286 24514 8553 8556 13462 13462 -0.05760421447439512 EQYRKKREYRL 11 Unmodified _EQYRKKREYRL_ 0 0 0 REV__ENST00000530958.5_1_11:108094696-108094846:+|nuORF REV__ENST00000530958.5_1_11:108094696-108094846:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6973876953125 3 523.626713 1567.85831 NaN NaN NaN NaN NaN NaN NaN 151.71 1 146.95 146.45 147.45 -4.7523 0 0 0 0.23698 1 30145 30145 0.36667 0 1 + 13287 22762 8554 8557 13463 13463 0.09709374485942135 EQYRKKREYRL 11 Unmodified _EQYRKKREYRL_ 0 0 0 REV__ENST00000530958.5_1_11:108094696-108094846:+|nuORF REV__ENST00000530958.5_1_11:108094696-108094846:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.682373046875 3 523.626713 1567.85831 NaN NaN NaN NaN NaN NaN NaN 153.77 1 149 148.5 149.5 -4.7684 0 0 0 0.22632 1 30558 30558 0.026206 0 1 + 13288 22762 8554 8557 13464 13464 0.09709374485942135 EQYRLKLE 8 Unmodified _EQYRLKLE_ 0 0 0 ENSG00000143458|ENST00000368918|GABPB2 ENSG00000143458|ENST00000368918|GABPB2 ENSG00000143458|ENST00000368918|GABPB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 102.95 1 98.933 98.433 99.433 -4.0212 0 0 0 0.21486 1 19792 19792 3.9444 0 1 13289 4491 8555 8558 13465 13465 0.0461712798901317 EQYRLKLE 8 Unmodified _EQYRLKLE_ 0 0 0 ENSG00000143458|ENST00000368918|GABPB2 ENSG00000143458|ENST00000368918|GABPB2 ENSG00000143458|ENST00000368918|GABPB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 103.19 1 99.17 98.67 99.67 -4.0212 0 0 0 0.21486 1 19840 19840 3.9444 0 1 13290 4491 8555 8558 13466 13466 0.0461712798901317 EQYRLKLE 8 Unmodified _EQYRLKLE_ 0 0 0 ENSG00000143458|ENST00000368918|GABPB2 ENSG00000143458|ENST00000368918|GABPB2 ENSG00000143458|ENST00000368918|GABPB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013244628906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 103.68 1 99.63 99.13 100.13 -4.0543 0 0 0 0.21486 1 19935 19935 3.9444 0 1 13291 4491 8555 8558 13467 13467 0.0461712798901317 EQYRLKLE 8 Unmodified _EQYRLKLE_ 0 0 0 ENSG00000143458|ENST00000368918|GABPB2 ENSG00000143458|ENST00000368918|GABPB2 ENSG00000143458|ENST00000368918|GABPB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 103.94 1 99.882 99.382 100.38 -4.0543 0 0 0 0.21486 1 19985 19985 3.9444 0 1 13292 4491 8555 8558 13468 13468 0.0461712798901317 EQYWYKLF 8 Unmodified _EQYWYKLF_ 0 0 0 ENST00000591632.5_1_18:60191431-60230292:+|nuORF ENST00000591632.5_1_18:60191431-60230292:+|nuORF ENST00000591632.5_1_18:60191431-60230292:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2530517578125 2 588.78985 1175.56515 0.35755 0.00021052 -1.858 -0.001094 -1.5005 -0.00088347 588.7877413235922 80.22 1.1845 76.407 75.819 77.003 -3.8129 110 33 5 0 0 0 0.40661 1 15144 15144 32.117 11.246 1 15258000 13293 11627 8556 8559 13469 13469 -0.015613728969810836 EQYWYKLF 8 Unmodified _EQYWYKLF_ 0 0 0 ENST00000591632.5_1_18:60191431-60230292:+|nuORF ENST00000591632.5_1_18:60191431-60230292:+|nuORF ENST00000591632.5_1_18:60191431-60230292:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 588.78985 1175.56515 -0.13356 -7.8639E-05 -1.4452 -0.0008509 -1.5787 -0.00092953 588.7879573332925 80.035 1.0391 76.359 75.833 76.872 -3.676 -0.023812 0.00021964 NaN 32.117 117 29 6 NaN NaN NaN NaN 0 NaN NaN 0 21815000 13294 11627 8556 8559 -0.015613728969810836 ERAAKLFPGS 10 Unmodified _ERAAKLFPGS_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000183054|Q99666-2|RGPD5;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;ENST00000471422.1_1_2:113179488-113180181:-|nuORF;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENST00000495924.1_1_2:109347284-109347978:+|nuORF;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20440673828125 3 359.201341 1074.58219 -0.55765 -0.00020031 0.77845 0.00027962 0.2208 7.9311E-05 359.201632736337 16.948 2.5451 15.732 14.727 17.272 -1.2159 232 72 4 0 0 0 0.69673 1 2738 2738 11.518 1.444 1 9248000 13295 4961;4959;1113;6979 8557 8560 13470 13470 0.047885477088584594 ERAAKLFPGS 10 Unmodified _ERAAKLFPGS_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000183054|Q99666-2|RGPD5;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;ENST00000471422.1_1_2:113179488-113180181:-|nuORF;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENST00000495924.1_1_2:109347284-109347978:+|nuORF;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.201341 1074.58219 -0.46558 -0.00016724 0.6476 0.00023262 0.18202 6.5383E-05 359.2015768760706 16.894 2.329 15.622 14.804 17.133 -1.2722 -0.036242 -1.9552E-05 NaN 11.518 197 67 4 NaN NaN NaN NaN 0 NaN NaN 0 10332000 13296 4961;4959;1113;6979 8557 8560 0.047885477088584594 ERADAWYIRE 10 Unmodified _ERADAWYIRE_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21533203125 3 436.882559 1307.62585 -0.40475 -0.00017683 -4.226 -0.0018462 -4.6307 -0.0020231 436.8799660680574 105.37 0.24469 101.11 100.96 101.2 -4.2638 9 6 2 0 0 0 0.72703 1 20728 20728 8.4443 3.3968 1 374870 + 13297 15726 8558 8561 13471 13471 -0.015658875847066156 ERADAWYIRE 10 Unmodified _ERADAWYIRE_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2162780761719 3 436.882559 1307.62585 0.57537 0.00025137 -3.4234 -0.0014956 -2.848 -0.0012443 437.216711056975 105.08 0.29102 100.99 100.87 101.16 -4.0913 10 7 2 0 0 0 0.70859 1 20206 20206 10.315 3.2781 1 878280 + 13298 15726 8558 8561 13472 13472 -0.015658875847066156 ERADAWYIRE 10 Unmodified _ERADAWYIRE_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 436.882559 1307.62585 -0.40475 -0.00017683 -4.226 -0.0018462 -4.6307 -0.0020231 436.8799660680574 105.37 0.24469 101.11 100.96 101.2 -4.2638 0.056537 -0.00029291 NaN 10.315 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 374870 + 13299 15726 8558 8561 -0.015658875847066156 ERADAWYIRE 10 Unmodified _ERADAWYIRE_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 436.882559 1307.62585 0.57537 0.00025137 -3.4234 -0.0014956 -2.848 -0.0012443 437.216711056975 105.08 0.29102 100.99 100.87 101.16 -4.0913 -0.056537 0.00075896 NaN 10.315 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 878280 + 13300 15726 8558 8561 -0.015658875847066156 ERADPSYCK 9 Unmodified _ERADPSYCK_ 0 0 0 ENSG00000159433|ENST00000290607|STARD9;nc|ENSG00000159433|Q9P2P6-2|STARD9;ENST00000564158.5_1_15:42867889-42955097:+|nuORF;nc|ENSG00000159433|Q9P2P6-3|STARD9 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0727844238281 3 356.830808 1067.47059 0.73702 0.00026299 0.055809 1.9914E-05 0.79283 0.00028291 356.83073229029014 26.975 0.21129 25.193 25.061 25.272 -1.7821 9 5 2 0 0 0 0.83265 1 4789 4789 10.151 3.9448 1 547860 13301 5207 8559 8562 13473 13473 -0.060442547106276834 ERAFQDTGF 9 Unmodified _ERAFQDTGF_ 0 0 0 REV__nc|ENSG00000103707|Q96DP5-2|MTFMT REV__nc|ENSG00000103707|Q96DP5-2|MTFMT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.55181884765625 3 357.501568 1069.48287 -0.21876 -7.8207E-05 0.41135 0.00014706 0.19259 6.885E-05 357.50169953810877 24.352 0.31062 24.352 24.234 24.545 0 12 8 2 0 0 0 0.68708 1 4201 4201 7.1017 0 1 841440 + 13302 14896 8560 8563 13474 13474 -0.04908894975892508 ERAFQDTGF 9 Unmodified _ERAFQDTGF_ 0 0 0 REV__nc|ENSG00000103707|Q96DP5-2|MTFMT REV__nc|ENSG00000103707|Q96DP5-2|MTFMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.501568 1069.48287 0.87199 0.00031174 -0.71272 -0.0002548 0.15927 5.6939E-05 357.50127251739997 26.112 0.34121 24.33 24.141 24.483 -1.7821 -0.010833 -0.00057596 NaN 7.1017 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 481230 + 13303 14896 8560 8563 -0.04908894975892508 ERAKIKRLRA 10 Unmodified _ERAKIKRLRA_ 0 0 0 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.28668212890625 3 414.270201 1239.78877 NaN NaN NaN NaN NaN NaN NaN 16.011 1 14.795 14.295 15.295 -1.2159 0 0 0 0.22588 1 2499 2499 1.4551 0.82829 1 13304 6174 8561 8564 13475 13475 0.1784696032782449 ERALMMYR 8 Unmodified _ERALMMYR_ 0 0 0 REV__ENSG00000103319|ENST00000263026|EEF2K REV__ENSG00000103319|ENST00000263026|EEF2K MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0730285644531 3 357.180895 1068.52086 -0.22735 -8.1204E-05 -0.95882 -0.00034247 -1.1862 -0.00042368 357.1806390041589 23.968 1.0017 23.968 23.165 24.167 0 43 28 3 0 0 0 1.004 1 4082 4082 13.042 2.243 1 2731400 + 13305 14874 8562 8565 13476 13476 -0.010664235864624061 ERALMMYR 8 Unmodified _ERALMMYR_ 0 0 0 REV__ENSG00000103319|ENST00000263026|EEF2K REV__ENSG00000103319|ENST00000263026|EEF2K MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5484619140625 3 357.180895 1068.52086 0.087885 3.1391E-05 -1.5564 -0.00055591 -1.4685 -0.00052452 357.180481079032 25.522 0.68833 23.95 23.605 24.293 -1.5721 38 19 3 0 0 0 0.77784 1 4143 4143 5.2969 0.76802 1 2887000 + 13306 14874 8562 8565 13477 13477 -0.010664235864624061 ERALMMYR 8 Unmodified _ERALMMYR_ 0 0 0 REV__ENSG00000103319|ENST00000263026|EEF2K REV__ENSG00000103319|ENST00000263026|EEF2K MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.0732727050781 3 357.180895 1068.52086 0.087885 3.1391E-05 -1.5564 -0.00055591 -1.4685 -0.00052452 357.180481079032 25.522 0.68833 23.95 23.605 24.293 -1.5721 38 19 3 0 0 0 1.004 1 4227 4227 13.042 2.243 1 2887000 + 13307 14874 8562 8565 13478 13478 -0.010664235864624061 ERALMMYR 8 Unmodified _ERALMMYR_ 0 0 0 REV__ENSG00000103319|ENST00000263026|EEF2K REV__ENSG00000103319|ENST00000263026|EEF2K MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.07281494140625 3 357.180895 1068.52086 -0.76368 -0.00027277 -0.59495 -0.0002125 -1.3586 -0.00048528 357.1807652334723 25.743 1.003 23.89 23.534 24.537 -1.8534 43 28 3 0 0 0 1.0231 1 4256 4256 8.7454 1.1365 1 2405000 + 13308 14874 8562 8565 13479 13479 -0.010664235864624061 ERAPDVILR 9 Unmodified _ERAPDVILR_ 0 0 0 REV__HS3ST4|p.G366R|1|0.37|ENSG00000182601|chr16:26135973-26135973|G/A|missense_variant REV__HS3ST4|p.G366R|1|0.37|ENSG00000182601|chr16:26135973-26135973|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.073486328125 3 356.876857 1067.60874 -0.23028 -8.218E-05 2.7267 0.00097309 2.4964 0.00089091 356.8777384943567 29.365 0.58968 27.291 27 27.59 -2.0743 23 16 2 0 0 0 0.87797 1 4961 4961 6.6304 1.7334 1 436600 + 13309 23639 8563 8566 13480 13480 0.07764236600155527 ERARLKVVP 9 Unmodified _ERARLKVVP_ 0 0 0 ENST00000546793.1_1_12:53438990-53439816:-|nuORF ENST00000546793.1_1_12:53438990-53439816:-|nuORF ENST00000546793.1_1_12:53438990-53439816:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0725402832031 3 356.560981 1066.66111 -0.080998 -2.8881E-05 -0.10857 -3.8713E-05 -0.18957 -6.7594E-05 356.5609246324504 41.176 0.87404 41.176 40.709 41.583 0 42 24 2 0 0 0 0.82357 1 7747 7747 15.248 7.6395 1 1321800 13310 11131 8564 8567 13481 13481 0.1304481973379552 ERCHMALVL 9 Unmodified _ERCHMALVL_ 0 0 0 REV__nc|ENSG00000101187|Q96BD0-3|SLCO4A1 REV__nc|ENSG00000101187|Q96BD0-3|SLCO4A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5574645996094 3 357.852778 1070.53651 -1.7581 -0.00062914 1.2458 0.0004458 -0.51232 -0.00018334 357.8533318890387 19.087 0.2053 17.452 17.29 17.496 -1.6351 7 5 2 0 0 0 0.88338 1 2836 2836 2.086 0.17963 1 265180 + 13311 23975 8565 8568 13482 13482 0.004058629305973227 ERCPSCWS 8 Unmodified _ERCPSCWS_ 0 0 0 ENST00000518644.5_1_17:78389610-78398076:+|nuORF;ENST00000517295.6_1_17:78395634-78399295:+|nuORF ENST00000518644.5_1_17:78389610-78398076:+|nuORF ENST00000518644.5_1_17:78389610-78398076:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.4695129394531 3 323.1302 966.368771 -0.30825 -9.9604E-05 1.2388 0.00040029 0.93053 0.00030068 323.130551340894 46.45 0.66149 43.61 43.311 43.972 -2.8409 31 18 2 0 0 0 8448 1 8765 8765 10.074 3.6825 1 2901300 13312 10793 8566 8569 13483 13483 -0.11575824334011031 ERCPSCWS 8 Unmodified _ERCPSCWS_ 0 0 0 ENST00000518644.5_1_17:78389610-78398076:+|nuORF;ENST00000517295.6_1_17:78395634-78399295:+|nuORF ENST00000518644.5_1_17:78389610-78398076:+|nuORF ENST00000518644.5_1_17:78389610-78398076:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 323.1302 966.368771 -0.21874 -7.0682E-05 1.1745 0.00037951 0.95574 0.00030883 323.1305686072676 43.484 0.48459 43.484 43.12 43.604 0 -0.10809 -7.9504E-05 NaN 10.074 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1253500 13313 10793 8566 8569 -0.11575824334011031 ERCPSCWS 8 Unmodified _ERCPSCWS_ 0 0 0 ENST00000518644.5_1_17:78389610-78398076:+|nuORF;ENST00000517295.6_1_17:78395634-78399295:+|nuORF ENST00000518644.5_1_17:78389610-78398076:+|nuORF ENST00000518644.5_1_17:78389610-78398076:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 323.1302 966.368771 -0.0051632 -1.6684E-06 0.85353 0.0002758 0.84836 0.00027413 323.1304820301796 46.497 0.76997 43.631 43.275 44.045 -2.8653 0.03933 -0.00039064 NaN 10.074 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1986800 13314 10793 8566 8569 -0.11575824334011031 ERCPSCWS 8 Unmodified _ERCPSCWS_ 0 0 0 ENST00000518644.5_1_17:78389610-78398076:+|nuORF;ENST00000517295.6_1_17:78395634-78399295:+|nuORF ENST00000518644.5_1_17:78389610-78398076:+|nuORF ENST00000518644.5_1_17:78389610-78398076:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 323.1302 966.368771 -0.78422 -0.0002534 1.7751 0.00057359 0.99087 0.00032018 323.13074636532576 46.51 0.55338 43.643 43.406 43.96 -2.8666 0.051207 0.00050272 NaN 10.074 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1494100 13315 10793 8566 8569 -0.11575824334011031 ERCQGETEDL 10 Unmodified _ERCQGETEDL_ 0 0 0 ENST00000485575.1_1_1:156120026-156126208:+|nuORF ENST00000485575.1_1_1:156120026-156126208:+|nuORF ENST00000485575.1_1_1:156120026-156126208:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2651977539062 2 590.25096 1178.48737 0.31221 0.00018428 2.2586 0.0013331 2.5708 0.0015174 590.2519787155377 144.65 0.24092 139.71 139.62 139.86 -4.9445 9 6 2 0 0 0 0.34409 1 27940 27940 1.0651 0.65688 1 2299400 13316 10442 8567 8570 13484 13484 -0.09473798615294982 ERCSNKIRRRY 11 Unmodified _ERCSNKIRRRY_ 0 0 0 REV__ENST00000513487.5_1_5:87524264-87564634:-|nuORF REV__ENST00000513487.5_1_5:87524264-87564634:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 494.2314758300781 3 494.268642 1479.7841 NaN NaN NaN NaN NaN NaN NaN 41.387 1 41.387 40.887 41.887 0 0 0 0 0.22632 1 7719 7719 0.172 0.14579 1 + 13317 22534 8568 8571 13485 13485 0.06339708122777665 ERDGHCTQPH 10 Unmodified _ERDGHCTQPH_ 0 0 0 REV__ENST00000261499.8_2_17:19265865-19266015:-|nuORF REV__ENST00000261499.8_2_17:19265865-19266015:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2523193359375 2 590.251628 1178.4887 0.3494 0.00020623 1.0212 0.00060275 1.3706 0.00080898 590.2519535122635 138.98 0.48752 138.98 138.7 139.19 0 19 13 3 0 0 0 0.4708 1 27619 27619 26.268 0 1 4813100 + 13318 20184 8569 8572 13486 13486 -0.093401197358844 ERDLEAAVY 9 Unmodified _ERDLEAAVY_ 0 0 0 REV__CELSR2|p.S563Y|1|0.07|ENSG00000143126|chr1:109251767-109251767|C/A|missense_variant REV__CELSR2|p.S563Y|1|0.07|ENSG00000143126|chr1:109251767-109251767|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27392578125 2 533.264196 1064.51384 0.22608 0.00012056 -0.35344 -0.00018848 -0.12736 -6.7917E-05 533.2639106493723 130.16 1.0548 125.38 124.75 125.8 -4.7725 59 28 3 0 0 0 0.45972 1 24970 24970 8.1555 1.5252 1 5610100 + 13319 13365 8570 8573 13487 13487 -0.015837416616705013 EREARGLYVF 10 Unmodified _EREARGLYVF_ 0 0 0 REV__ENST00000497184.5_1_7:44089925-44090420:+|nuORF REV__ENST00000497184.5_1_7:44089925-44090420:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 413.7082214355469 3 413.887533 1238.64077 -0.21485 -8.8926E-05 -0.045121 -1.8675E-05 -0.25998 -0.0001076 413.8874818709202 33.761 1.2166 31.443 30.798 32.015 -2.3175 47 34 2 0 0 0 1.1313 1 6217 6217 3.8763 3.6109 1 1023300 + 13320 22400 8571 8574 13488 13488 0.030996042833066895 EREETEETYEE 11 Unmodified _EREETEETYEE_ 0 0 0 REV__ENSG00000054118|ENST00000354618|THRAP3 REV__ENSG00000054118|ENST00000354618|THRAP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.8675537109375 3 481.863447 1442.56851 NaN NaN NaN NaN NaN NaN NaN 10.036 1 8.9425 8.4425 9.4425 -1.0936 0 0 0 0.23698 1 1115 1115 0 0 1 + 13321 14101 8572 8575 13489 13489 -0.13506864162195598 EREIFDRFNNC 11 Unmodified _EREIFDRFNNC_ 0 0 0 REV__JRKL|p.D446Gfs*26|1|0.07|ENSG00000183340|chr11:96391985-96391986|-/GTTTTACT|frameshift_variant REV__JRKL|p.D446Gfs*26|1|0.07|ENSG00000183340|chr11:96391985-96391986|-/GTTTTACT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7728271484375 3 481.554226 1441.64085 NaN NaN NaN NaN NaN NaN NaN 47.742 1 44.792 44.292 45.292 -2.9499 0 0 0 0.22632 1 8725 8725 1.4551 0.94916 1 + 13322 18829 8573 8576 13490 13490 -0.0623076377896723 EREKSLEA 8 Unmodified _EREKSLEA_ 0 0 0 ENST00000589204.1_1_18:56196243-56204256:-|nuORF;ENSG00000198796|ENST00000361673|ALPK2 ENST00000589204.1_1_18:56196243-56204256:-|nuORF ENST00000589204.1_1_18:56196243-56204256:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7741394042969 2 481.251089 960.487624 -0.20207 -9.7244E-05 -1.0036 -0.00048299 -1.2057 -0.00058023 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 8448 1 7709 7709 14.838 0 1 85144000 13323 7496 8574 8577 13491 13491 0.005799891668516466 ERERERLH 8 Unmodified _ERERERLH_ 0 0 0 nc|ENSG00000212643|Q15695|ZRSR2P1 nc|ENSG00000212643|Q15695|ZRSR2P1 nc|ENSG00000212643|Q15695|ZRSR2P1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20501708984375 3 375.535494 1123.58465 -0.10311 -3.8723E-05 -1.3677 -0.00051363 -1.4708 -0.00055236 375.8697103892321 25.448 0.86682 25.448 25.256 26.123 0 99 24 6 0 0 0 1.004 1 4546 4546 5.2969 0 1 62991000 13324 12587 8575 8578 13492 13492 0.027803961665085808 EREVAQLQA 9 Unmodified _EREVAQLQA_ 0 0 0 REV__ENSG00000047644|ENST00000380861|WWC3 REV__ENSG00000047644|ENST00000380861|WWC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2784423828125 2 522.277638 1042.54072 -0.40596 -0.00021202 0.82828 0.00043259 0.42233 0.00022057 522.2780570401796 52.25 0.4223 49.368 49.17 49.592 -2.8824 16 11 2 0 0 0 0.62314 1 9926 9926 11.495 0 1 1120800 + 13325 14069 8576 8579 13493 13493 0.021153669495333816 EREVAQLQA 9 Unmodified _EREVAQLQA_ 0 0 0 REV__ENSG00000047644|ENST00000380861|WWC3 REV__ENSG00000047644|ENST00000380861|WWC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2778930664062 2 522.277638 1042.54072 -0.66414 -0.00034686 0.77727 0.00040595 0.11313 5.9087E-05 522.278013427265 52.526 0.49488 49.439 49.266 49.761 -3.0876 15 13 2 0 0 0 0.55539 1 9650 9650 16.149 0 1 1564200 + 13326 14069 8576 8579 13494 13494 0.021153669495333816 ERFRSLITG 9 Unmodified _ERFRSLITG_ 0 0 0 REV__ENSG00000227729|ENST00000557640|RD3L REV__ENSG00000227729|ENST00000557640|RD3L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2161865234375 3 360.204974 1077.59309 NaN NaN NaN NaN NaN NaN NaN 77.41 1 77.41 76.91 77.91 0 0 0 0 0.23508 1 15052 15052 5.7834 0 1 + 13327 19733 8577 8580 13495 13495 0.057399500831252226 ERGFEKLT 8 Unmodified _ERGFEKLT_ 0 0 0 REV__nc|ENSG00000152214|Q99578-2|RIT2 REV__nc|ENSG00000152214|Q99578-2|RIT2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.265380859375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 138.26 1 138.26 137.76 138.76 0 0 0 0 0.2325 1 27443 27443 0.62683 0 1 + 13328 24100 8578 8581 13496 13496 0.023328834091330464 ERGFEKLT 8 Unmodified _ERGFEKLT_ 0 0 0 REV__nc|ENSG00000152214|Q99578-2|RIT2 REV__nc|ENSG00000152214|Q99578-2|RIT2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27069091796875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 138.4 1 138.4 137.9 138.9 0 0 0 0 0.2293 1 27476 27476 0.68139 0.27313 1 + 13329 24100 8578 8581 13497 13497 0.023328834091330464 ERGFEKLT 8 Unmodified _ERGFEKLT_ 0 0 0 REV__nc|ENSG00000152214|Q99578-2|RIT2 REV__nc|ENSG00000152214|Q99578-2|RIT2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2646179199219 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.49 1 175.49 174.99 175.99 0 0 0 0 0.21486 1 36355 36355 10.824 0.75 1 + 13330 24100 8578 8581 13498 13498 0.023328834091330464 ERGFEKLT 8 Unmodified _ERGFEKLT_ 0 0 0 REV__nc|ENSG00000152214|Q99578-2|RIT2 REV__nc|ENSG00000152214|Q99578-2|RIT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2644348144531 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.79 1 170.92 170.42 171.42 -4.8739 0 0 0 0.2325 1 34959 34959 0.25148 0.12366 1 + 13331 24100 8578 8581 13499 13499 0.023328834091330464 ERGFEKLT 8 Unmodified _ERGFEKLT_ 0 0 0 REV__nc|ENSG00000152214|Q99578-2|RIT2 REV__nc|ENSG00000152214|Q99578-2|RIT2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2654113769531 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.63 1 170.73 170.23 171.23 -4.9008 0 0 0 0.21486 1 35006 35006 7.9102 1.187 1 + 13332 24100 8578 8581 13500 13500 0.023328834091330464 ERGVVGLAA 9 Unmodified _ERGVVGLAA_ 0 0 0 REV__ENST00000565493.1_1_20:34638316-34638640:-|nuORF REV__ENST00000565493.1_1_20:34638316-34638640:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2287292480469 2 436.253434 870.492316 0.39825 0.00017374 -0.28592 -0.00012473 0.11233 4.9005E-05 436.25327599623887 49.445 0.77008 49.445 49.055 49.825 0 55 21 4 0 0 0 0.069179 1 9370 9370 44.945 0 1 9568500 + 13333 23109 8579 8582 13501 13501 0.051889181002820806 ERHLLRRV 8 Unmodified _ERHLLRRV_ 0 0 0 REV__ENSG00000129355|ENST00000393599|CDKN2D REV__ENSG00000129355|ENST00000393599|CDKN2D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20556640625 3 360.224591 1077.65194 NaN NaN NaN NaN NaN NaN NaN 34.867 1 34.867 34.367 35.367 0 0 0 0 0.21486 1 6391 6391 1.1933 0.12188 1 + 13334 15960 8580 8583 13502 13502 0.1162247116810704 ERHLPTAVR 9 Unmodified _ERHLPTAVR_ 0 0 0 ENST00000407721.6_1_11:71155177-71155915:-|nuORF ENST00000407721.6_1_11:71155177-71155915:-|nuORF ENST00000407721.6_1_11:71155177-71155915:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2083435058594 3 360.208718 1077.60433 0.27874 0.0001004 -0.75513 -0.000272 -0.47639 -0.0001716 360.2083522982861 31.883 0.524 29.856 29.658 30.182 -2.0264 22 14 2 0 0 0 0.64031 1 5537 5537 10.315 0 1 742710 13335 9552 8581 8584 13503 13503 0.06862772177260013 ERIAEKTMAK 10 Unmodified _ERIAEKTMAK_ 0 0 0 REV__ENST00000395053.7_1_20:62701832-62703530:+|nuORF REV__ENST00000395053.7_1_20:62701832-62703530:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.2904968261719 3 392.885024 1175.63324 -0.83955 -0.00032985 0.13171 5.1746E-05 -0.70784 -0.0002781 392.88508067532763 15.053 0.38644 13.938 13.78 14.167 -1.1142 21 10 3 0 0 0 0.91149 1 2325 2325 2.8433 1.9789 1 3942900 + 13336 18242 8582 8585 13504 13504 0.052451286913765216 ERIEDKLY 8 Unmodified _ERIEDKLY_ 0 0 0 REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1 REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2823486328125 2 533.282389 1064.55022 0.0096556 5.1492E-06 0.14761 7.8717E-05 0.15726 8.3866E-05 533.2824757530736 90.094 1.4208 86.234 85.542 86.963 -3.8595 119 39 4 0 0 0 0.51112 1 17534 17534 27.629 3.6082 1 12558000 + 13337 24952 8583 8586 13505 13505 0.020531352350417365 ERIEGRVA 8 Unmodified _ERIEGRVA_ 0 0 0 ENSG00000215305|ENST00000380445|VPS16;ENST00000380393.7_1_20:2844875-2903853:+|nuORF;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;nc|ENSG00000215305|Q9H269-2|VPS16 ENSG00000215305|ENST00000380445|VPS16 ENSG00000215305|ENST00000380445|VPS16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2525939941406 2 465.261791 928.509028 0.042368 1.9712E-05 0.67763 0.00031528 0.72 0.00033499 465.26210305314436 25.495 0.241 23.961 23.786 24.027 -1.5342 11 6 2 0 0 0 0.78094 1 4193 4193 34.932 10.911 1 532000 13338 7744 8584 8587 13506 13506 0.041914189862382045 ERIILIHM 8 Unmodified _ERIILIHM_ 0 0 0 ENST00000473805.5_1_1:52289395-52291006:-|nuORF ENST00000473805.5_1_1:52289395-52291006:-|nuORF ENST00000473805.5_1_1:52289395-52291006:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 512.9127197265625 2 512.802237 1023.58992 NaN NaN NaN NaN NaN NaN NaN 150.09 1 144.89 144.39 145.39 -5.1994 0 0 0 0.23782 1 29081 29081 0.12286 0 1 13339 10244 8585 8588 13507 13507 0.07906983704788217 ERIKEYTLWFV 11 Unmodified _ERIKEYTLWFV_ 0 0 0 REV__ENSG00000153291|ENST00000371347|SLC25A27 REV__ENSG00000153291|ENST00000371347|SLC25A27 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3999633789062 2 742.400827 1482.7871 NaN NaN NaN NaN NaN NaN NaN 104.56 1 100.22 99.718 100.72 -4.346 0 0 0 0.2367 1 20031 20031 2.9952 1.6657 1 + 13340 17144 8586 8589 13508 13508 0.0650186172854319 ERIQFKSY 8 Unmodified _ERIQFKSY_ 0 0 0 REV__ENSG00000123388|ENST00000546378|HOXC11 REV__ENSG00000123388|ENST00000546378|HOXC11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.2414245605469 3 357.525825 1069.55564 0.068002 2.4313E-05 -0.0085244 -3.0477E-06 0.059478 2.1265E-05 357.8601687940044 55.737 0.31384 52.547 52.39 52.704 -3.1895 16 8 2 0 0 0 1.0267 1 10279 10279 1.4819 0 1 2575200 + 13341 15727 8587 8590 13509 13509 0.023648588175319674 ERIQKERKEKI 11 Unmodified _ERIQKERKEKI_ 0 0 0 TPP2|p.F663Lfs*13|1|0.13|ENSG00000134900|chr13:102640342-102640342|T/-|frameshift_variant;TPP2|p.F722Lfs*12|1|0.06|ENSG00000134900|chr13:102643366-102643367|-/AAACTTA|frameshift_variant;nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2 TPP2|p.F663Lfs*13|1|0.13|ENSG00000134900|chr13:102640342-102640342|T/-|frameshift_variant TPP2|p.F663Lfs*13|1|0.13|ENSG00000134900|chr13:102640342-102640342|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.18707275390625 4 364.970317 1455.85216 -0.17191 -6.2743E-05 -0.034972 -1.2764E-05 -0.20689 -7.5507E-05 364.9702824548496 28.474 0.21157 28.474 28.387 28.598 0 7 5 2 0 0 0 0.66124 1 5079 5079 0.00056442 0 1 591590 13342 3882 8588 8591 13510 13510 0.1424685625438542 ERIRQYLPRNP 11 Unmodified _ERIRQYLPRNP_ 0 0 0 ENSG00000088038|ENST00000221232|CNOT3 ENSG00000088038|ENST00000221232|CNOT3 ENSG00000088038|ENST00000221232|CNOT3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2373962402344 3 481.27227 1440.79498 NaN NaN NaN NaN NaN NaN NaN 147.92 1 147.92 147.42 148.42 0 0 0 0 0.22632 1 29593 29593 3.0723 3.0409 1 13343 1724 8589 8592 13511 13511 0.09221433768698262 ERKEEPGEL 9 Unmodified _ERKEEPGEL_ 0 0 0 REV__nc|ENSG00000125864|Q12934-3|BFSP1 REV__nc|ENSG00000125864|Q12934-3|BFSP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7759399414062 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 174.67 1 169.78 169.28 170.28 -4.8916 0 0 0 0.22251 1 34780 34780 16.942 4.4107 1 + 13344 15839 8590 8593 13512 13512 -0.004043566329301029 ERKEIVHAP 9 Unmodified _ERKEIVHAP_ 0 0 0 ENST00000594345.5_1_19:17447879-17449192:+|nuORF ENST00000594345.5_1_19:17447879-17449192:+|nuORF ENST00000594345.5_1_19:17447879-17449192:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2047424316406 3 360.204974 1077.59309 NaN NaN NaN NaN NaN NaN NaN 17.661 1 17.661 17.161 18.161 0 0 0 0 0.23508 1 2806 2806 6.1918 0.40842 1 13345 11652 8591 8594 13513 13513 0.057399500831252226 ERKEIVHAP 9 Unmodified _ERKEIVHAP_ 0 0 0 ENST00000594345.5_1_19:17447879-17449192:+|nuORF ENST00000594345.5_1_19:17447879-17449192:+|nuORF ENST00000594345.5_1_19:17447879-17449192:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2134704589844 3 360.204974 1077.59309 -0.34224 -0.00012328 0.15485 5.5778E-05 -0.18739 -6.7497E-05 360.20502106742214 18.943 0.3212 17.618 17.469 17.79 -1.3251 14 8 3 0 0 0 0.65153 1 2851 2851 9.544 1.935 1 907890 13346 11652 8591 8594 13514 13514 0.057399500831252226 ERKYIRDP 8 Unmodified _ERKYIRDP_ 0 0 0 REV__ENST00000320623.9_1_16:69752155-69760649:-|nuORF REV__ENST00000320623.9_1_16:69752155-69760649:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2010803222656 3 359.533091 1075.57744 0.38703 0.00013915 -0.5769 -0.00020741 -0.18986 -6.8262E-05 359.86736025336916 22.534 0.27118 21.047 20.856 21.127 -1.4869 16 7 3 0 0 0 0.82378 1 3869 3869 3.2813 0.54611 1 283930 + 13347 20545 8592 8595 13515 13515 0.04267663566065494 ERKYIRDP 8 Unmodified _ERKYIRDP_ 0 0 0 REV__ENST00000320623.9_1_16:69752155-69760649:-|nuORF REV__ENST00000320623.9_1_16:69752155-69760649:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.533091 1075.57744 0.38703 0.00013915 -0.5769 -0.00020741 -0.18986 -6.8262E-05 359.86736025336916 22.534 0.27118 21.047 20.856 21.127 -1.4869 0.060118 -0.00095285 NaN 3.2813 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 283930 + 13348 20545 8592 8595 0.04267663566065494 ERKYIRDP 8 Unmodified _ERKYIRDP_ 0 0 0 REV__ENST00000320623.9_1_16:69752155-69760649:-|nuORF REV__ENST00000320623.9_1_16:69752155-69760649:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.533091 1075.57744 -0.11654 -4.1899E-05 0.82375 0.00029616 0.70721 0.00025427 359.53335539131206 22.38 0.24891 20.926 20.801 21.049 -1.4535 -0.060118 0.00055788 NaN 3.2813 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 285450 + 13349 20545 8592 8595 0.04267663566065494 ERLEKEFK 8 Unmodified _ERLEKEFK_ 0 0 0 REV__tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1 REV__tr|U7SN90|U7SN90_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01753PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018737792969 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 28.488 1 26.491 25.991 26.991 -1.9962 0 0 0 0.21486 1 4810 4810 8.1555 1.9637 1 + 13350 24973 8593 8596 13516 13516 0.0461712798901317 ERLFAASYS 9 Unmodified _ERLFAASYS_ 0 0 0 ENST00000297185.7_1_5:137911006-137911057:-|nuORF ENST00000297185.7_1_5:137911006-137911057:-|nuORF ENST00000297185.7_1_5:137911006-137911057:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26220703125 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 85.313 1 81.404 80.904 81.904 -3.9093 0 0 0 0.16428 1 16224 16224 28.487 3.0875 1 13351 8518 8594 8597 13517 13517 -0.011194204534831442 ERLGPPPGRY 10 Unmodified _ERLGPPPGRY_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2078552246094 3 381.208607 1140.60399 NaN NaN NaN NaN NaN NaN NaN 81.996 1 78.439 77.939 78.939 -3.557 0 0 0 0.22588 1 16023 16023 5.4027 0.5057 1 13352 2311 8595 8598 13518 13518 0.03931352457425419 ERLPNPPDWRV 11 Unmodified _ERLPNPPDWRV_ 0 0 0 ENST00000438770.6_1_19:37742814-37746809:+|nuORF ENST00000438770.6_1_19:37742814-37746809:+|nuORF ENST00000438770.6_1_19:37742814-37746809:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2437744140625 3 460.245721 1377.71533 NaN NaN NaN NaN NaN NaN NaN 127.35 1 122.56 122.06 123.06 -4.7958 0 0 0 0.22632 1 24445 24445 0.026206 0 1 13353 9864 8596 8599 13519 13519 0.04158367094669302 ERLQNGKTFF 10 Unmodified _ERLQNGKTFF_ 0 0 0 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.2694396972656 3 413.887533 1238.64077 -0.21456 -8.8804E-05 0.37036 0.00015329 0.1558 6.4484E-05 413.8876663109523 44.347 1.969 41.557 40.806 42.775 -2.79 76 55 2 0 0 0 0.91149 1 8539 8539 5.7834 1.5939 1 1329500 + 13354 16173 8597 8600 13520 13520 0.030996042833066895 ERLQNGKTFF 10 Unmodified _ERLQNGKTFF_ 0 0 0 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 413.887533 1238.64077 -0.45436 -0.00018805 0.58956 0.00024401 0.1352 5.5958E-05 413.88773417879185 44.064 0.90919 41.317 40.941 41.85 -2.7475 -0.22392 0.000304 NaN 5.7834 39 25 2 NaN NaN NaN NaN 0 NaN NaN 0 847880 + 13355 16173 8597 8600 0.030996042833066895 ERLRRHFYWQM 11 Unmodified _ERLRRHFYWQM_ 0 0 0 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.379150390625 2 811.412069 1620.80958 NaN NaN NaN NaN NaN NaN NaN 49.89 1 47.009 46.509 47.509 -2.8811 0 0 0 0.22632 1 9456 9456 0.094841 0.094841 1 13356 7956 8598 8601 13521 13521 0.02401182645166955 ERLRRHFYWQM 11 Unmodified _ERLRRHFYWQM_ 0 0 0 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2785034179688 3 541.277138 1620.80958 NaN NaN NaN NaN NaN NaN NaN 61.884 1 58.515 58.015 59.015 -3.3694 0 0 0 0.22632 1 11544 11544 0.094841 0 1 13357 7956 8598 8601 13522 13522 0.02401182645166955 ERLRRHFYWQM 11 Unmodified _ERLRRHFYWQM_ 0 0 0 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2771606445312 3 541.277138 1620.80958 NaN NaN NaN NaN NaN NaN NaN 176.63 1 171.73 171.23 172.23 -4.9008 0 0 0 0.22632 1 35219 35219 0.094841 0.094841 1 13358 7956 8598 8601 13523 13523 0.02401182645166955 ERLSDRWY 8 Unmodified _ERLSDRWY_ 0 0 0 YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant;nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1 YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.0714416503906 3 375.520962 1123.54106 -0.14923 -5.6039E-05 -0.13105 -4.9212E-05 -0.28028 -0.00010525 375.52087644479974 21.794 1.0109 20.409 20.036 21.047 -1.3847 74 28 3 0 0 0 0.86478 1 3552 3552 1.4819 0 1 2222300 13359 3087 8599 8602 13524 13524 -0.01577213330642735 ERLTRQCY 8 Unmodified _ERLTRQCY_ 0 0 0 REV__ENSG00000100030|ENST00000215832|MAPK1 REV__ENSG00000100030|ENST00000215832|MAPK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.049072265625 3 356.846681 1067.51821 -0.22087 -7.8815E-05 -0.49805 -0.00017773 -0.71891 -0.00025654 356.84638991011775 24.409 0.54641 24.409 24.267 24.813 0 22 15 2 0 0 0 1.0248 1 4183 4183 6.7232 0 1 706200 + 13360 14657 8600 8603 13525 13525 -0.012845557197579183 ERLYLGYRLCR 11 Unmodified _ERLYLGYRLCR_ 0 0 0 REV__ENST00000592381.1_2_17:33895403-33900955:+|nuORF REV__ENST00000592381.1_2_17:33895403-33900955:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.249755859375 3 481.262606 1440.76599 NaN NaN NaN NaN NaN NaN NaN 113.49 1 109.04 108.54 109.54 -4.4539 0 0 0 0.22632 1 22359 22359 0.0059557 0 1 + 13361 23350 8601 8604 13526 13526 0.06323573148051764 ERNKRQRRRER 11 Unmodified _ERNKRQRRRER_ 0 0 0 REV__nc|ENSG00000196504|O75400-3|PRPF40A REV__nc|ENSG00000196504|O75400-3|PRPF40A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 528.9613037109375 3 528.640238 1582.89889 NaN NaN NaN NaN NaN NaN NaN 168.2 1 168.2 167.7 168.7 0 0 0 0 0.22632 1 34428 34428 1.4551 0.8698 1 + 13362 24227 8602 8605 13527 13527 0.13075153648901505 ERNLELPG 8 Unmodified _ERNLELPG_ 0 0 0 REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2508239746094 2 464.248349 926.482145 -0.08553 -3.9707E-05 -0.018023 -8.3673E-06 -0.10355 -4.8074E-05 464.24827390518686 41.362 1.2634 38.822 38.348 39.611 -2.5398 81 35 4 0 0 0 0.71273 1 7465 7465 12.532 1.7076 1 10123000 + 13363 13945 8603 8606 13528 13528 0.015963103750436858 ERNREYTYQW 10 Unmodified _ERNREYTYQW_ 0 0 0 ENST00000528777.3_1_12:85556565-85656835:+|nuORF;nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1 ENST00000528777.3_1_12:85556565-85656835:+|nuORF ENST00000528777.3_1_12:85556565-85656835:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7823181152344 3 482.224985 1443.65313 NaN NaN NaN NaN NaN NaN NaN 119.56 1 115.1 114.6 115.6 -4.467 0 0 0 2.8426 1 23017 23017 0.69767 0.19171 1 13364 3811 8604 8607 13529 13529 -0.050954040442775295 ERNRGGSM 8 Unmodified _ERNRGGSM_ 0 0 0 REV__tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1 REV__tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76922607421875 2 453.71415 905.413748 -0.39843 -0.00018077 -0.22781 -0.00010336 -0.62624 -0.00028413 453.7139721921061 35.304 1.9721 32.91 32.007 33.979 -2.3938 115 55 3 0 0 0 0.70613 1 6353 6353 13.508 1.8676 1 2395900 + 13365 25329 8605 8608 13530 13530 -0.04274257476447474 ERNRWKYEEFL 11 Unmodified _ERNRWKYEEFL_ 0 0 0 nc|ENSG00000204406|Q9P267|MBD5;ENSG00000204406|ENST00000642680|MBD5 nc|ENSG00000204406|Q9P267|MBD5 nc|ENSG00000204406|Q9P267|MBD5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.394287109375 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 158.62 1 153.35 152.85 153.85 -5.2712 0 0 0 0.22632 1 30778 30778 0.50596 0.41111 1 13366 7577 8606 8609 13531 13531 0.011940039493310906 ERPHLTSRK 9 Unmodified _ERPHLTSRK_ 0 0 0 ENSG00000185298|ENST00000329214|CCDC137 ENSG00000185298|ENST00000329214|CCDC137 ENSG00000185298|ENST00000329214|CCDC137 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2162780761719 3 375.215873 1122.62579 NaN NaN NaN NaN NaN NaN NaN 116.48 1 112 111.5 112.5 -4.486 0 0 0 0.19636 1 22967 22967 2.4985 0 1 13367 6978 8607 8610 13532 13532 0.06938157205991047 ERPPRRRRRR 10 Unmodified _ERPPRRRRRR_ 0 0 0 REV__ENST00000394967.2_1_2:175202164-175202371:+|nuORF REV__ENST00000394967.2_1_2:175202164-175202371:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73516845703125 3 478.962764 1433.86646 NaN NaN NaN NaN NaN NaN NaN 158.79 1 153.52 153.02 154.02 -5.2712 0 0 0 2.8426 1 30809 30809 0.043787 0 1 + 13368 21255 8608 8611 13533 13533 0.16688411036557227 ERPRPNRGP 9 Unmodified _ERPRPNRGP_ 0 0 0 REV__ENST00000476146.5_1_20:34043137-34046179:+|nuORF REV__ENST00000476146.5_1_20:34043137-34046179:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20147705078125 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 41.009 1 38.375 37.875 38.875 -2.6348 0 0 0 0.23508 1 7651 7651 10.151 2.5416 1 + 13369 22105 8609 8612 13534 13534 0.04348717374705302 ERQHHADEA 9 Unmodified _ERQHHADEA_ 0 0 0 REV__nc|ENSG00000277399|Q6PRD1|GPR179 REV__nc|ENSG00000277399|Q6PRD1|GPR179 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.1790466308594 3 364.832088 1091.47443 0.92186 0.00033632 -0.83279 -0.00030383 0.089069 3.2495E-05 364.8317224621266 25.759 0.90034 24.11 23.649 24.55 -1.6482 44 25 2 0 0 0 0.6226 1 4484 4484 4.897 1.0207 1 795910 + 13370 19942 8610 8613 13535 13535 -0.06764448892522523 ERQRRSKKR 9 Unmodified _ERQRRSKKR_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.27301025390625 3 415.253321 1242.73813 NaN NaN NaN NaN NaN NaN NaN 26.139 1 24.356 23.856 24.856 -1.7821 0 0 0 0.22962 1 4604 4604 10.151 5.2536 1 + 13371 17221 8611 8614 13536 13536 0.12647431002824305 ERQSVFPF 8 Unmodified _ERQSVFPF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 505.27587890625 2 505.258717 1008.50288 0.18734 9.4657E-05 -0.18195 -9.1931E-05 0.0053946 2.7257E-06 505.2586106249384 116.21 0.73138 116.21 115.8 116.53 0 34 20 2 0 0 0 0.69887 1 22856 22856 14.582 1.0738 1 2769200 13372 3702 8612 8615 13537 13537 -0.0010309924527973635 ERQSVFPF 8 Unmodified _ERQSVFPF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 505.258717 1008.50288 0.19813 0.00010011 0.40445 0.00020435 0.60257 0.00030446 505.25886839756816 121.04 0.67489 116.51 116.12 116.8 -4.5337 0.18712 0.00036609 NaN 14.582 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1844500 13373 3702 8612 8615 -0.0010309924527973635 ERQSVFPF 8 Unmodified _ERQSVFPF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 505.258717 1008.50288 0.31356 0.00015843 -0.18882 -9.5401E-05 0.12475 6.303E-05 505.2587741755991 120.91 0.59496 116.22 115.97 116.56 -4.6873 -0.098507 -0.00023341 NaN 14.582 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3445100 13374 3702 8612 8615 -0.0010309924527973635 ERQSVFPF 8 Unmodified _ERQSVFPF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 505.258717 1008.50288 0.25384 0.00012825 0.24472 0.00012365 0.49856 0.0002519 505.258994066288 120.81 0.78592 116.34 115.92 116.71 -4.467 0.020385 0.00020469 NaN 14.582 33 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1705200 13375 3702 8612 8615 -0.0010309924527973635 ERRALYEK 8 Unmodified _ERRALYEK_ 0 0 0 REV__AK5|p.K399Nfs*26|1|0.15|ENSG00000154027|chr1:77518609-77518609|A/-|frameshift_variant REV__AK5|p.K399Nfs*26|1|0.15|ENSG00000154027|chr1:77518609-77518609|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26953125 2 532.795998 1063.57744 -0.019167 -1.0212E-05 -0.32389 -0.00017257 -0.34306 -0.00018278 532.7956916004945 50.013 0.40197 47.006 46.74 47.142 -3.0068 26 11 3 0 0 0 8448 1 9146 9146 6.2058 0 1 1653600 + 13376 12993 8613 8616 13538 13538 0.04819663566058807 ERRFVFQKY 9 Unmodified _ERRFVFQKY_ 0 0 0 ENST00000550249.2_1_2:74725056-74728711:-|nuORF;nc|ENSG00000179528|Q6XYB7-2|LBX2;ENSG00000179528|ENST00000377566|LBX2 ENST00000550249.2_1_2:74725056-74728711:-|nuORF ENST00000550249.2_1_2:74725056-74728711:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2427673339844 3 424.899773 1271.67749 -0.020696 -8.7938E-06 -1.6355 -0.0006949 -1.6562 -0.0007037 425.2332400537736 27.917 0.70196 25.921 25.644 26.346 -1.9962 26 19 2 0 0 0 0.84849 1 4674 4674 12.873 2.8563 1 1412300 13377 6633 8614 8617 13539 13539 0.05251900899907014 ERRHRRRKENQ 11 Unmodified _ERRHRRRKENQ_ 0 0 0 ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;CACNA1A|p.P2221Rfs*45|1|0.48|ENSG00000141837|chr19:13208879-13208879|A/-|frameshift_variant;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;CACNA1A|p.T1355Pfs*16|1|0.3|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;CACNA1A|p.N1375Tfs*54|1|0.21|ENSG00000141837|chr19:13261576-13261576|T/-|frameshift_variant;CACNA1A|p.Q1743Pfs*29|1|0.24|ENSG00000141837|chr19:13234944-13234945|-/A|frameshift_variant;CACNA1A|p.K1138Rfs*48|1|0.23|ENSG00000141837|chr19:13286645-13286645|G/-|frameshift_variant;CACNA1A|p.L1178Sfs*8|3|0.15|ENSG00000141837|chr19:13286524-13286524|G/-|frameshift_variant;CACNA1A|p.L1178Pfs*38|1|0.25|ENSG00000141837|chr19:13286523-13286524|-/G|frameshift_variant;CACNA1A|p.E1198Rfs*18|1|0.33|ENSG00000141837|chr19:13285168-13285169|-/T|frameshift_variant ENSG00000141837|ENST00000360228|CACNA1A ENSG00000141837|ENST00000360228|CACNA1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2628173828125 3 522.292838 1563.85669 NaN NaN NaN NaN NaN NaN NaN 136.48 1 131.58 131.08 132.08 -4.8951 0 0 0 0.22632 1 26228 26228 0.094841 0.094841 1 13378 4396 8615 8618 13540 13540 0.09731178240531335 ERRKEKKRRRK 11 Unmodified _ERRKEKKRRRK_ 0 0 0 nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18;ENST00000497508.1_1_2:669582-669891:-|nuORF nc|ENSG00000151353|Q96B42-2|TMEM18 nc|ENSG00000151353|Q96B42-2|TMEM18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.394287109375 2 785.497856 1568.98116 NaN NaN NaN NaN NaN NaN NaN 114.17 1 109.61 109.11 110.11 -4.555 0 0 0 0.23698 1 21919 21919 1.3295 1.3295 1 13379 4862 8616 8619 13541 13541 0.21942675727837013 ERRNKVLN 8 Unmodified _ERRNKVLN_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.03778076171875 3 343.536835 1027.58868 -0.64788 -0.00022257 0.55032 0.00018906 -0.097557 -3.3514E-05 343.537020369854 14.254 0.17696 13.081 12.965 13.142 -1.173 10 4 3 0 0 0 0.83238 1 1921 1921 20.454 3.3407 1 817870 13380 3373 8617 8620 13542 13542 0.0759848566024175 ERRNKVLN 8 Unmodified _ERRNKVLN_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 343.536835 1027.58868 -0.48494 -0.0001666 -1.4459 -0.00049673 -1.9309 -0.00066333 343.5370040410726 13.122 0.17223 13.122 13.03 13.203 0 0.0074437 -0.00216 NaN 20.454 12 4 4 NaN NaN NaN NaN 0 NaN NaN 0 713280 13381 3373 8617 8620 0.0759848566024175 ERRNKVLN 8 Unmodified _ERRNKVLN_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 343.536835 1027.58868 -0.93162 -0.00032005 0.8184 0.00028115 -0.11323 -3.8898E-05 343.53705505707285 14.255 0.21576 13.14 13.014 13.23 -1.1142 0.025854 0.00017362 NaN 20.454 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3112800 13382 3373 8617 8620 0.0759848566024175 ERRPHWPP 8 Unmodified _ERRPHWPP_ 0 0 0 REV__nc|ENSG00000088836|Q8NBS3-4|SLC4A11 REV__nc|ENSG00000088836|Q8NBS3-4|SLC4A11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 358.90057373046875 3 358.857909 1073.5519 NaN NaN NaN NaN NaN NaN NaN 31.438 1 29.412 28.912 29.912 -2.0264 0 0 0 0.21486 1 5426 5426 3.5965 0.8613 1 + 13383 23962 8618 8621 13543 13543 0.018062338343270312 ERRQHLELDTH 11 Unmodified _ERRQHLELDTH_ 0 0 0 REV__nc|ENSG00000186001|Q96II8-3|LRCH3 REV__nc|ENSG00000186001|Q96II8-3|LRCH3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 717.3641357421875 2 717.365838 1432.71712 NaN NaN NaN NaN NaN NaN NaN 168.45 1 163.56 163.06 164.06 -4.8916 0 0 0 0.22632 1 33207 33207 0.58532 0 1 + 13384 19005 8619 8622 13544 13544 0.01807376112651582 ERRRARERELE 11 Unmodified _ERRRARERELE_ 0 0 0 REV__ENSG00000133030|ENST00000651222|MPRIP REV__ENSG00000133030|ENST00000651222|MPRIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2082214355469 4 375.709194 1498.80767 -0.53552 -0.0002012 1.7297 0.00064985 1.1941 0.00044865 375.71001958743886 15.963 0.17529 14.741 14.644 14.819 -1.2219 6 4 2 0 0 0 0.89074 1 2270 2270 1.4551 0.8698 1 270470 + 13385 16150 8620 8623 13545 13545 0.07821845160947305 ERRRHKKRIQR 11 Unmodified _ERRRHKKRIQR_ 0 0 0 ENST00000461933.1_1_3:169684610-169686205:+|nuORF ENST00000461933.1_1_3:169684610-169686205:+|nuORF ENST00000461933.1_1_3:169684610-169686205:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.2047119140625 5 313.397315 1561.95019 -0.22801 -7.1459E-05 -0.0018933 -5.9336E-07 -0.22991 -7.2053E-05 313.5978769450461 128.64 2.4949 124.01 122.7 125.19 -4.6292 149 70 4 0 0 0 0.66242 1 25399 25399 0.172 0.14579 1 7656700 13386 10078 8621 8624 13546 13546 0.19169522413631057 ERRRHKKRIQR 11 Unmodified _ERRRHKKRIQR_ 0 0 0 ENST00000461933.1_1_3:169684610-169686205:+|nuORF ENST00000461933.1_1_3:169684610-169686205:+|nuORF ENST00000461933.1_1_3:169684610-169686205:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 5 313.397315 1561.95019 0.11765 3.6872E-05 -0.52277 -0.00016383 -0.40511 -0.00012696 313.39710703459457 128.77 2.3532 123.95 122.89 125.24 -4.817 0.023511 -0.00070639 NaN 0.172 93 66 2 NaN NaN NaN NaN 0 NaN NaN 0 6106600 13387 10078 8621 8624 0.19169522413631057 ERRRHKKRIQR 11 Unmodified _ERRRHKKRIQR_ 0 0 0 ENST00000461933.1_1_3:169684610-169686205:+|nuORF ENST00000461933.1_1_3:169684610-169686205:+|nuORF ENST00000461933.1_1_3:169684610-169686205:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 5 313.397315 1561.95019 -0.52975 -0.00016602 0.22037 6.9063E-05 -0.30938 -9.6958E-05 313.3972804628146 128.57 1.436 123.83 123.03 124.46 -4.7408 -0.10207 0.00045809 NaN 0.172 74 40 3 NaN NaN NaN NaN 0 NaN NaN 0 1851600 13388 10078 8621 8624 0.19169522413631057 ERRRLHRYVHF 11 Unmodified _ERRRLHRYVHF_ 0 0 0 REV__ENST00000469763.5_1_7:102016742-102065555:+|nuORF REV__ENST00000469763.5_1_7:102016742-102065555:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6937255859375 3 523.627158 1567.85965 NaN NaN NaN NaN NaN NaN NaN 149.34 1 149.34 148.84 149.84 0 0 0 0 0.22632 1 29896 29896 1.4551 1.4546 1 + 13389 15923 8622 8625 13547 13547 0.09843053365329979 ERRRNERLRRE 11 Unmodified _ERRRNERLRRE_ 0 0 0 ENSG00000121594|ENST00000264246|CD80;nc|ENSG00000121594|P33681-2|CD80;nc|ENSG00000121594|P33681-3|CD80 ENSG00000121594|ENST00000264246|CD80 ENSG00000121594|ENST00000264246|CD80 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3971557617188 2 785.443277 1568.872 NaN NaN NaN NaN NaN NaN NaN 121.19 1 121.19 120.69 121.69 0 0 0 0 0.23698 1 23887 23887 2.2828 0.95324 1 13390 3185 8623 8626 13548 13548 0.11032045037745775 ERRRNERLRRE 11 Unmodified _ERRRNERLRRE_ 0 0 0 ENSG00000121594|ENST00000264246|CD80;nc|ENSG00000121594|P33681-2|CD80;nc|ENSG00000121594|P33681-3|CD80 ENSG00000121594|ENST00000264246|CD80 ENSG00000121594|ENST00000264246|CD80 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3907470703125 2 785.443277 1568.872 NaN NaN NaN NaN NaN NaN NaN 134.95 1 130.13 129.63 130.63 -4.8175 0 0 0 0.23698 1 25979 25979 0.86438 0.51374 1 13391 3185 8623 8626 13549 13549 0.11032045037745775 ERRRREQVERR 11 Unmodified _ERRRREQVERR_ 0 0 0 ENST00000526537.2_1_11:118518618-118527530:+|nuORF;ENST00000530994.5_1_11:118515264-118527530:+|nuORF;ENST00000524713.5_1_11:118512334-118527530:+|nuORF;ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1 ENST00000526537.2_1_11:118518618-118527530:+|nuORF ENST00000526537.2_1_11:118518618-118527530:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3883056640625 2 785.443277 1568.872 NaN NaN NaN NaN NaN NaN NaN 152.7 1 147.48 146.98 147.98 -5.2209 0 0 0 0.23698 1 29594 29594 2.4985 0 1 13392 1120 8624 8627 13550 13550 0.110320450377003 ERRRRRNLFIV 11 Unmodified _ERRRRRNLFIV_ 0 0 0 REV__ENSG00000150637|ENST00000582621|CD226 REV__ENSG00000150637|ENST00000582621|CD226 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 506.19879150390625 3 505.642809 1513.9066 0.10984 5.5539E-05 1.852 0.00093647 1.9619 0.00099201 505.97771211912317 158.89 0.17989 154.09 154.01 154.19 -4.7952 5 4 2 0 0 0 0.89124 1 31607 31607 0.172 0.17144 1 866480 + 13393 17037 8625 8628 13551 13551 0.1701991291649847 ERRRRRRRPRK 11 Unmodified _ERRRRRRRPRK_ 0 0 0 REV__ENST00000367590.8_1_1:180601192-180601402:+|nuORF REV__ENST00000367590.8_1_1:180601192-180601402:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2724609375 3 541.343867 1621.00977 0.30319 0.00016413 -2.9041 -0.0015721 -2.6009 -0.001408 541.3410431436203 130.92 0.28687 130.92 130.83 131.12 0 10 7 2 0 0 0 0.89122 1 25908 25908 0.094841 0.094841 1 2524200 + 13394 20928 8626 8629 13552 13552 0.22410838147652612 ERRRRRRWHWH 11 Unmodified _ERRRRRRWHWH_ 0 0 0 ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 577.6536865234375 3 577.652701 1729.93627 NaN NaN NaN NaN NaN NaN NaN 168.59 1 163.8 163.3 164.3 -4.7898 0 0 0 0.22632 1 34090 34090 0.50596 0 1 13395 8720 8627 8630 13553 13553 0.100502897052138 ERRTGQARL 9 Unmodified _ERRTGQARL_ 0 0 0 REV__ENSG00000262655|ENST00000576479|SPON1 REV__ENSG00000262655|ENST00000576479|SPON1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7866821289062 2 543.809971 1085.60539 0.11095 6.0333E-05 -2.8761 -0.0015641 -2.7652 -0.0015037 544.3100439322255 142.7 0.14027 137.68 137.58 137.72 -5.0261 6 3 2 0 0 0 0.50943 1 27507 27507 0.12781 0 1 967090 + 13396 19896 8628 8631 13554 13554 0.06600986546163767 ERRWKLTY 8 Unmodified _ERRWKLTY_ 0 0 0 ENST00000293777.5_1_17:4636647-4636857:+|nuORF ENST00000293777.5_1_17:4636647-4636857:+|nuORF ENST00000293777.5_1_17:4636647-4636857:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3189697265625 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 125.64 1 120.87 120.37 121.37 -4.7681 0 0 0 0.21486 1 24113 24113 5.7604 0.46354 1 13397 8484 8629 8632 13555 13555 0.055439428370846144 ERRYHLRYYK 10 Unmodified _ERRYHLRYYK_ 0 0 0 UNK|p.P486Lfs*12|3|0.28|ENSG00000132478|chr17:75818721-75818721|C/-|frameshift_variant;ENSG00000132478|ENST00000589666|UNK UNK|p.P486Lfs*12|3|0.28|ENSG00000132478|chr17:75818721-75818721|C/-|frameshift_variant UNK|p.P486Lfs*12|3|0.28|ENSG00000132478|chr17:75818721-75818721|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3966064453125 2 742.399484 1482.78442 NaN NaN NaN NaN NaN NaN NaN 142.19 1 137.54 137.04 138.04 -4.656 0 0 0 2.8426 1 28103 28103 0.0013812 0 1 13398 3733 8630 8633 13556 13556 0.062334511142580595 ERRYHLRYYK 10 Unmodified _ERRYHLRYYK_ 0 0 0 UNK|p.P486Lfs*12|3|0.28|ENSG00000132478|chr17:75818721-75818721|C/-|frameshift_variant;ENSG00000132478|ENST00000589666|UNK UNK|p.P486Lfs*12|3|0.28|ENSG00000132478|chr17:75818721-75818721|C/-|frameshift_variant UNK|p.P486Lfs*12|3|0.28|ENSG00000132478|chr17:75818721-75818721|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.39892578125 2 742.399484 1482.78442 NaN NaN NaN NaN NaN NaN NaN 41.294 1 38.805 38.305 39.305 -2.4896 0 0 0 0.22588 1 7407 7407 0.35063 0 1 13399 3733 8630 8633 13557 13557 0.062334511142580595 ERSEESFFTE 10 Unmodified _ERSEESFFTE_ 0 0 0 REV__ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant REV__ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7725830078125 2 630.772582 1259.53061 NaN NaN NaN NaN NaN NaN NaN 48.07 1 45.12 44.62 45.62 -2.9499 0 0 0 2.8426 1 8793 8793 0.043787 0 1 + 13400 16474 8631 8634 13558 13558 -0.08877285566381943 ERSINPAE 8 Unmodified _ERSINPAE_ 0 0 0 REV__ENSG00000135414|ENST00000257868|GDF11 REV__ENSG00000135414|ENST00000257868|GDF11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2301940917969 2 458.230156 914.445759 0.29872 0.00013688 -0.079651 -3.6499E-05 0.21907 0.00010038 458.23007197269425 29.628 0.52203 27.735 27.439 27.961 -1.8928 33 14 3 0 0 0 0.35341 1 5057 5057 34.402 3.7652 1 6266200 + 13401 16267 8632 8635 13559 13559 -0.0148856652166387 ERSLKVAA 8 Unmodified _ERSLKVAA_ 0 0 0 ENST00000473834.1_1_3:38065750-38065924:-|nuORF;nc|ENSG00000187091|P51178-2|PLCD1 ENST00000473834.1_1_3:38065750-38065924:-|nuORF ENST00000473834.1_1_3:38065750-38065924:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2165832519531 2 437.261259 872.507966 0.95113 0.00041589 -0.98509 -0.00043074 -0.033961 -1.485E-05 437.26087944760684 25.005 0.41408 23.357 23.131 23.545 -1.6482 23 11 3 0 0 0 0.54916 1 4362 4362 25.399 2.663 1 1069900 13402 10246 8633 8636 13560 13560 0.06661204617319072 ERSPLQTP 8 Unmodified _ERSPLQTP_ 0 0 0 REV__nc|ENSG00000184164|Q6UXH1-2|CRELD2 REV__nc|ENSG00000184164|Q6UXH1-2|CRELD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2507629394531 2 464.248349 926.482145 -0.2504 -0.00011625 0.18396 8.5402E-05 -0.066444 -3.0846E-05 464.2483655171451 41.443 1.1378 38.809 38.396 39.534 -2.6348 84 32 4 0 0 0 0.67861 1 7735 7735 17.113 0.96379 1 11160000 + 13403 18882 8634 8637 13561 13561 0.01596310375032317 ERSSVLDRY 9 Unmodified _ERSSVLDRY_ 0 0 0 nc|ENSG00000118407|Q7Z7B0-3|FILIP1;nc|ENSG00000118407|Q7Z7B0-2|FILIP1;ENSG00000118407|ENST00000237172|FILIP1 nc|ENSG00000118407|Q7Z7B0-3|FILIP1 nc|ENSG00000118407|Q7Z7B0-3|FILIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.53497314453125 3 375.528005 1123.56219 0.33457 0.00012564 -0.73448 -0.00027582 -0.39991 -0.00015018 375.52771889595493 30.243 0.56007 28.35 28.101 28.661 -1.8928 61 15 5 0 0 0 0.73814 1 5134 5134 4.5289 0.33936 1 58423000 13404 3033 8635 8638 13562 13562 0.005347519782390009 ERTVLQLDRVQ 11 Unmodified _ERTVLQLDRVQ_ 0 0 0 REV__ENSG00000162927|ENST00000316752|PUS10 REV__ENSG00000162927|ENST00000316752|PUS10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7559509277344 3 452.924647 1355.75211 -0.078162 -3.5401E-05 0.42445 0.00019224 0.34629 0.00015684 452.9247848982337 99.569 0.69887 95.436 95.094 95.793 -4.1326 50 19 3 0 0 0 0.65515 1 19517 19517 1.4551 0 1 7626800 + 13405 17540 8636 8639 13563 13563 0.08846618920597393 ERVRDPMY 8 Unmodified _ERVRDPMY_ 0 0 0 REV__PCDH17|p.V286M|1|0.48|ENSG00000118946|chr13:57633402-57633402|G/A|missense_variant REV__PCDH17|p.V286M|1|0.48|ENSG00000118946|chr13:57633402-57633402|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.07476806640625 3 355.843048 1064.50731 0.0013814 4.9154E-07 -2.9685 -0.0010563 -2.9671 -0.0010558 355.8423015799586 47.003 0.33943 44.061 43.934 44.273 -2.9421 13 9 2 0 0 0 1.0254 1 8589 8589 3.5965 0.8613 1 698020 + 13406 24437 8637 8640 13564 13564 -0.022359580940246815 ERVRDPMY 8 Unmodified _ERVRDPMY_ 0 0 0 REV__PCDH17|p.V286M|1|0.48|ENSG00000118946|chr13:57633402-57633402|G/A|missense_variant REV__PCDH17|p.V286M|1|0.48|ENSG00000118946|chr13:57633402-57633402|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 355.843048 1064.50731 -0.00015733 -5.5984E-08 -3.1677 -0.0011272 -3.1678 -0.0011272 355.841936063686 44.022 0.34251 44.022 43.814 44.156 0 -0.047153 -0.00071642 NaN 3.5965 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 651800 + 13407 24437 8637 8640 -0.022359580940246815 ERVRDPMY 8 Unmodified _ERVRDPMY_ 0 0 0 REV__PCDH17|p.V286M|1|0.48|ENSG00000118946|chr13:57633402-57633402|G/A|missense_variant REV__PCDH17|p.V286M|1|0.48|ENSG00000118946|chr13:57633402-57633402|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 355.843048 1064.50731 -0.78056 -0.00027776 -1.5008 -0.00053405 -2.2814 -0.00081181 355.84241442828164 47.075 0.34555 44.125 43.843 44.188 -2.9499 0.055976 0.001063 NaN 3.5965 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 937900 + 13408 24437 8637 8640 -0.022359580940246815 ERVRFLDRYFY 11 Unmodified _ERVRFLDRYFY_ 0 0 0 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2704467773438 3 521.940409 1562.7994 -0.6788 -0.00035429 -2.2244 -0.001161 -2.9032 -0.0015153 521.9390523251591 134.84 0.2092 129.97 129.89 130.1 -4.8726 6 5 2 0 0 0 0.81822 1 25888 25888 1.2148 0.70888 1 741020 13409 7234 8638 8641 13565 13565 0.040508981916218545 ERVSLFLSQ 9 Unmodified _ERVSLFLSQ_ 0 0 0 REV__nc|ENSG00000211779|A0A0B4J249|TRAV5 REV__nc|ENSG00000211779|A0A0B4J249|TRAV5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2027282714844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 40.706 1 38.216 37.716 38.716 -2.4896 0 0 0 0.23508 1 7292 7292 7.1017 0 1 + 13410 24255 8639 8642 13566 13566 0.0461712798901317 ERWIDWHIRRC 11 Unmodified _ERWIDWHIRRC_ 0 0 0 REV__TRIM23|p.N92Kfs*37|1|0.39|ENSG00000113595|chr5:65614188-65614189|-/T|frameshift_variant REV__TRIM23|p.N92Kfs*37|1|0.39|ENSG00000113595|chr5:65614188-65614189|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.393798828125 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 116.58 1 112.23 111.73 112.73 -4.3585 0 0 0 0.22632 1 22444 22444 0.00056442 0 1 + 13411 25478 8640 8643 13567 13567 0.01664609611088963 ERWIVNFD 8 Unmodified _ERWIVNFD_ 0 0 0 nc|ENSG00000165164|Q6ZTR5-6|CFAP47;CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant;CFAP47|p.H2345Afs*15|1|0.09|ENSG00000165164|chrX:36236809-36236810|-/A|frameshift_variant;ENSG00000165164|ENST00000378653|CFAP47 nc|ENSG00000165164|Q6ZTR5-6|CFAP47 nc|ENSG00000165164|Q6ZTR5-6|CFAP47 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.205078125 3 360.182058 1077.52434 -0.43733 -0.00015752 -1.2924 -0.00046548 -1.7297 -0.000623 360.18153156626624 17.519 0.44509 16.246 15.974 16.419 -1.2722 20 12 2 0 0 0 0.76793 1 2583 2583 5.7319 1.5423 1 577390 13412 12428 8641 8644 13568 13568 -0.011317142165808036 ERWYSNSQ 8 Unmodified _ERWYSNSQ_ 0 0 0 REV__ENSG00000118620|ENST00000261560|ZNF430 REV__ENSG00000118620|ENST00000261560|ZNF430 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0729064941406 3 357.161434 1068.46247 0.48528 0.00017332 0.1387 4.9539E-05 0.62398 0.00022286 357.16151054312326 28.581 0.68626 26.624 26.26 26.946 -1.9561 49 19 3 0 0 0 1.0252 1 5162 5162 6.2058 6.2058 1 2765100 + 13413 15560 8642 8645 13569 13569 -0.06902065635722465 ERYIVPDL 8 Unmodified _ERYIVPDL_ 0 0 0 tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1 tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1 tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 502.23370361328125 2 502.7742 1003.53385 0.43026 0.00021632 -0.19135 -9.6204E-05 0.23891 0.00012012 503.2754710607354 102.77 0.74804 98.753 98.354 99.102 -4.0212 42 20 3 0 0 0 0.86208 1 19771 19771 0.62683 0 1 3191700 13414 26133 8643 8646 13570 13570 0.032220540689422705 ERYLSQLSK 9 Unmodified _ERYLSQLSK_ 0 0 0 REV__ENSG00000080298|ENST00000617270|RFX3 REV__ENSG00000080298|ENST00000617270|RFX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2082214355469 3 375.208384 1122.60332 -0.53046 -0.00019903 1.9305 0.00072433 1.4 0.0005253 375.5435437232681 16.086 0.34549 14.864 14.644 14.989 -1.2219 25 9 4 0 0 0 0.5428 1 2270 2270 4.897 1.0207 1 2608000 + 13415 14407 8644 8647 13571 13571 0.04692513017721467 ESAAPPVPPP 10 Unmodified _ESAAPPVPPP_ 0 0 0 OPHN1|p.V742Sfs*43|1|0.37|ENSG00000079482|chrX:68053746-68053747|-/G|frameshift_variant;ENSG00000079482|ENST00000355520|OPHN1 OPHN1|p.V742Sfs*43|1|0.37|ENSG00000079482|chrX:68053746-68053747|-/G|frameshift_variant OPHN1|p.V742Sfs*43|1|0.37|ENSG00000079482|chrX:68053746-68053747|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2448425292969 2 481.2531 960.491647 0.040863 1.9665E-05 -2.6578 -0.0012791 -2.6169 -0.0012594 481.2518469026552 24.939 0.33745 24.939 24.781 25.118 0 14 9 2 0 0 0 0.6417 1 4327 4327 16.942 2.3606 1 559130 13416 1597 8645 8648 13572 13572 0.009820786605587273 ESAAPVSYVTA 11 Unmodified _ESAAPVSYVTA_ 0 0 0 REV__ENST00000491929.1_1_13:103452770-103457665:+|nuORF REV__ENST00000491929.1_1_13:103452770-103457665:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7774047851562 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 78.651 1 75.188 74.688 75.688 -3.4633 0 0 0 0.12979 1 15357 15357 31.268 0 1 + 13417 22327 8646 8649 13573 13573 -0.01386874864465426 ESAAPVSYVTA 11 Unmodified _ESAAPVSYVTA_ 0 0 0 REV__ENST00000491929.1_1_13:103452770-103457665:+|nuORF REV__ENST00000491929.1_1_13:103452770-103457665:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7769775390625 2 547.771854 1093.52915 -0.017209 -9.4268E-06 1.752 0.00095969 1.7348 0.00095026 547.7722624927029 79.048 0.84034 75.243 74.841 75.681 -3.8048 45 23 3 0 0 0 0.48392 1 14972 14972 38.176 0 1 2719300 + 13418 22327 8646 8649 13574 13574 -0.01386874864465426 ESAAPVSYVTA 11 Unmodified _ESAAPVSYVTA_ 0 0 0 REV__ENST00000491929.1_1_13:103452770-103457665:+|nuORF REV__ENST00000491929.1_1_13:103452770-103457665:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7915649414062 2 547.771854 1093.52915 -0.017209 -9.4268E-06 1.752 0.00095969 1.7348 0.00095026 547.7722624927029 79.048 0.84034 75.243 74.841 75.681 -3.8048 45 23 3 0 0 0 0.82449 1 14995 14995 15.248 0 1 2719300 + 13419 22327 8646 8649 13575 13575 -0.01386874864465426 ESAAPVSYVTA 11 Unmodified _ESAAPVSYVTA_ 0 0 0 REV__ENST00000491929.1_1_13:103452770-103457665:+|nuORF REV__ENST00000491929.1_1_13:103452770-103457665:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.790283203125 2 547.771854 1093.52915 0.030699 1.6816E-05 1.4444 0.00079119 1.4751 0.00080801 547.7721046580657 78.961 0.8027 75.285 74.851 75.654 -3.676 35 22 2 0 0 0 0.67676 1 15004 15004 26.268 2.4784 1 3052000 + 13420 22327 8646 8649 13576 13576 -0.01386874864465426 ESAAVIRAY 9 Unmodified _ESAAVIRAY_ 0 0 0 REV__ENSG00000160460|ENST00000598249|SPTBN4 REV__ENSG00000160460|ENST00000598249|SPTBN4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26397705078125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 72.008 1 68.469 67.969 68.969 -3.5385 0 0 0 0.23508 1 13656 13656 10.824 2.2306 1 + 13421 17421 8647 8650 13577 13577 0.023328834091216777 ESAAVRPW 8 Unmodified _ESAAVRPW_ 0 0 0 ENST00000508806.1_1_5:5376366-5376573:-|nuORF ENST00000508806.1_1_5:5376366-5376573:-|nuORF ENST00000508806.1_1_5:5376366-5376573:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23895263671875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 36.44 1 34.046 33.546 34.546 -2.3938 0 0 0 0.21486 1 6729 6729 11.64 0.81637 1 13422 10720 8648 8651 13578 13578 0.00036345066178000707 ESAAVRPW 8 Unmodified _ESAAVRPW_ 0 0 0 ENST00000508806.1_1_5:5376366-5376573:-|nuORF ENST00000508806.1_1_5:5376366-5376573:-|nuORF ENST00000508806.1_1_5:5376366-5376573:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2387390136719 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 102.34 1 98.323 97.823 98.823 -4.0212 0 0 0 0.21452 1 19667 19667 13.508 4.9146 1 13423 10720 8648 8651 13579 13579 0.00036345066178000707 ESAEELDSDS 10 Unmodified _ESAEELDSDS_ 0 0 0 REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2644653320312 2 541.212023 1080.40949 -0.27282 -0.00014765 -0.99285 -0.00053734 -1.2657 -0.000685 541.2114390845114 107.92 0.69515 103.6 103.21 103.9 -4.32 59 19 4 0 0 0 0.5575 1 21246 21246 21.537 6.2885 1 8613700 + 13424 18690 8649 8652 13580 13580 -0.12749532999714575 ESAEELDSDS 10 Unmodified _ESAEELDSDS_ 0 0 0 REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2646484375 2 541.212023 1080.40949 -0.014965 -8.0993E-06 -0.45774 -0.00024773 -0.4727 -0.00025583 541.2116958122143 107.9 0.86139 103.49 103.16 104.02 -4.4121 76 24 4 0 0 0 0.34654 2 20698 20698;20773 34.402 11.969 1 15522000 + 13425 18690 8649 8652 13581;13582 13581 -0.12749532999714575 ESAEIEPRN 9 Unmodified _ESAEIEPRN_ 0 0 0 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2581176757812 2 522.751453 1043.48835 0.50746 0.00026528 -2.332 -0.0012191 -1.8245 -0.00095378 522.750991844128 104.5 0.82597 104.5 104.04 104.86 0 58 23 3 0 0 0 0.74655 1 20470 20470 15.847 9.124 1 7139700 13426 1442 8650 8653 13583 13583 -0.031652161840838744 ESAEIEPRN 9 Unmodified _ESAEIEPRN_ 0 0 0 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2821044921875 2 522.751453 1043.48835 -0.70032 -0.0003661 -1.1394 -0.00059564 -1.8398 -0.00096174 522.7516298148416 108.66 0.86877 104.34 103.94 104.8 -4.32 58 24 3 0 0 0 0.74655 1 21357 21357 21.747 13.153 1 6189300 13427 1442 8650 8653 13584 13584 -0.031652161840838744 ESAEIEPRN 9 Unmodified _ESAEIEPRN_ 0 0 0 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2684936523438 2 522.751453 1043.48835 -0.80243 -0.00041947 -0.16296 -8.5186E-05 -0.96539 -0.00050466 522.7517329186186 108.88 0.90132 104.42 103.95 104.85 -4.4518 45 25 2 0 0 0 0.74655 1 20839 20839 21.747 15.023 1 5566700 13428 1442 8650 8653 13585 13585 -0.031652161840838744 ESAFLAYK 8 Unmodified _ESAFLAYK_ 0 0 0 REV__PLCL2|p.F508L|1|0.4|ENSG00000154822|chr3:17010870-17010870|C/A|missense_variant REV__PLCL2|p.F508L|1|0.4|ENSG00000154822|chr3:17010870-17010870|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.588 1 70.994 70.494 71.494 -3.594 0 0 0 0.2325 1 14168 14168 0.063987 0 1 + 13429 24482 8651 8654 13586 13586 0.00354693631857117 ESAGDTHAAA 10 Unmodified _ESAGDTHAAA_ 0 0 0 REV__ENSG00000110719|ENST00000265686|TCIRG1 REV__ENSG00000110719|ENST00000265686|TCIRG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2434997558594 2 465.201596 928.388638 NaN NaN NaN NaN NaN NaN NaN 71.24 1 71.24 70.74 71.74 0 0 0 0 0.22588 1 13800 13800 9.3831 0.035688 1 + 13430 15214 8652 8655 13587 13587 -0.07842033798056036 ESAGEKDLL 9 Unmodified _ESAGEKDLL_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2 REV__ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2542724609375 2 481.245472 960.476391 -0.10135 -4.8773E-05 0.060523 2.9127E-05 -0.040824 -1.9647E-05 481.2454865115772 95.925 1.4896 95.925 95.456 96.945 0 129 42 5 0 0 0 0.55979 1 18962 18962 15.847 1.0089 1 164850000 + 13431 15716 8653 8656 13588 13588 -0.0054283292729451205 ESAGLGRWES 10 Unmodified _ESAGLGRWES_ 0 0 0 REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7842407226562 2 546.259445 1090.50434 0.478 0.00026111 -0.33536 -0.00018319 0.14264 7.7918E-05 546.2592684107605 33.588 1.1778 31.372 30.944 32.122 -2.2158 113 33 5 0 0 0 0.53552 1 5805 5805 22.736 22.736 1 52451000 + 13432 23076 8654 8657 13589 13589 -0.037295099471975846 ESAGTAGVSH 10 Unmodified _ESAGTAGVSH_ 0 0 0 ENST00000439321.1_1_2:122407632-122408176:+|nuORF ENST00000439321.1_1_2:122407632-122408176:+|nuORF ENST00000439321.1_1_2:122407632-122408176:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2242431640625 2 458.211963 914.409374 NaN NaN NaN NaN NaN NaN NaN 28.648 1 26.652 26.152 27.152 -1.9962 0 0 0 2.8426 1 4844 4844 1.914 0 1 13433 9872 8655 8658 13590 13590 -0.05125443418376108 ESAHRSRI 8 Unmodified _ESAHRSRI_ 0 0 0 ENST00000585990.5_1_17:73910371-73916335:-|nuORF;ENST00000593156.1_1_17:73913837-73918141:-|nuORF;nc|ENSG00000188878|Q8TES7-2|FBF1;nc|ENSG00000188878|Q8TES7|FBF1;nc|ENSG00000188878|Q8TES7-5|FBF1;ENSG00000188878|ENST00000636174|FBF1 ENST00000585990.5_1_17:73910371-73916335:-|nuORF ENST00000585990.5_1_17:73910371-73916335:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7232666015625 2 478.25704 954.499526 -0.063795 -3.051E-05 -2.1602 -0.0010331 -2.224 -0.0010636 478.2562124199598 32.189 0.35039 32.189 31.978 32.329 0 12 9 2 0 0 0 0.98792 1 5797 5797 2.3027 0 1 504440 13434 7205 8656 8659 13591 13591 0.020456507006997526 ESAKKLGP 8 Unmodified _ESAKKLGP_ 0 0 0 ENSG00000138136|ENST00000370193|LBX1 ENSG00000138136|ENST00000370193|LBX1 ENSG00000138136|ENST00000370193|LBX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2427673339844 2 415.242535 828.470518 0.23566 9.7857E-05 0.19842 8.2392E-05 0.43408 0.00018025 415.2423677317107 32.362 0.76632 30.335 30.042 30.808 -2.0264 62 21 4 0 0 0 0.76728 1 5554 5554 5.7604 1.0044 1 9626500 13435 4155 8657 8660 13592 13592 0.04942113351705757 ESAKKLGP 8 Unmodified _ESAKKLGP_ 0 0 0 ENSG00000138136|ENST00000370193|LBX1 ENSG00000138136|ENST00000370193|LBX1 ENSG00000138136|ENST00000370193|LBX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 415.242535 828.470518 0.077057 3.1997E-05 0.49899 0.0002072 0.57604 0.0002392 415.2424927035269 30.5 0.5598 30.5 30.199 30.759 0 0.1513 0.00011009 NaN 5.7604 43 15 4 NaN NaN NaN NaN 0 NaN NaN 0 15171000 13436 4155 8657 8660 0.04942113351705757 ESAKKLGP 8 Unmodified _ESAKKLGP_ 0 0 0 ENSG00000138136|ENST00000370193|LBX1 ENSG00000138136|ENST00000370193|LBX1 ENSG00000138136|ENST00000370193|LBX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 415.242535 828.470518 -0.018575 -7.7132E-06 0.4692 0.00019483 0.45062 0.00018712 415.24251565280076 32.487 0.77799 30.256 29.936 30.714 -2.2305 -0.092122 8.5353E-05 NaN 5.7604 54 21 3 NaN NaN NaN NaN 0 NaN NaN 0 8761500 13437 4155 8657 8660 0.04942113351705757 ESAKKLGP 8 Unmodified _ESAKKLGP_ 0 0 0 ENSG00000138136|ENST00000370193|LBX1 ENSG00000138136|ENST00000370193|LBX1 ENSG00000138136|ENST00000370193|LBX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 415.242535 828.470518 0.078377 3.2546E-05 0.26048 0.00010816 0.33886 0.00014071 415.24240394899147 32.451 0.77178 30.302 29.999 30.771 -2.1483 -0.046048 -8.7983E-05 NaN 5.7604 54 21 3 NaN NaN NaN NaN 0 NaN NaN 0 7587300 13438 4155 8657 8660 0.04942113351705757 ESALIEHPAV 10 Unmodified _ESALIEHPAV_ 0 0 0 ENSG00000215009|ENST00000399422|ACSM4 ENSG00000215009|ENST00000399422|ACSM4 ENSG00000215009|ENST00000399422|ACSM4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2822875976562 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 96.222 1 92.341 91.841 92.841 -3.881 0 0 0 0.17567 1 18468 18468 32.786 6.765 1 13439 7738 8658 8661 13593 13593 0.02053135235018999 ESALQYFNLSH 11 Unmodified _ESALQYFNLSH_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant;NBEAL1|p.D657Vfs*8|1|0.05|ENSG00000144426|chr2:203110256-203110257|-/TAAAAAA|frameshift_variant;NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant;NBEAL1|p.T1311Nfs*3|1|0.08|ENSG00000144426|chr2:203135875-203135876|-/A|frameshift_variant;NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156066894531 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 95.481 1 91.289 90.789 91.789 -4.1911 0 0 0 0.23528 1 18222 18222 4.1166 0.79699 1 13440 4552 8659 8662 13594 13594 -0.026887096788186682 ESALRQLY 8 Unmodified _ESALRQLY_ 0 0 0 REV__ENST00000460881.5_1_20:36841446-36845354:-|nuORF REV__ENST00000460881.5_1_20:36841446-36845354:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2644348144531 2 490.263999 978.513445 0.081648 4.0029E-05 -0.13587 -6.661E-05 -0.054218 -2.6581E-05 490.26389789986007 67.31 0.62753 63.983 63.791 64.419 -3.3268 34 17 3 0 0 0 8448 1 12770 12770 1.4551 1.2036 1 2246700 + 13441 17016 8660 8663 13595 13595 0.023328834091216777 ESALSSPAI 9 Unmodified _ESALSSPAI_ 0 0 0 REV__nc|ENSG00000147133|P21675-23|TAF1 REV__nc|ENSG00000147133|P21675-23|TAF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2165832519531 2 437.729458 873.444362 0.03167 1.3863E-05 -0.94347 -0.00041298 -0.9118 -0.00039912 437.7289182308316 89.141 0.10078 85.391 85.341 85.442 -3.7501 4 2 2 0 0 0 0.60698 1 17066 17066 16.942 0 1 248460 + 13442 16921 8661 8664 13596 13596 0.002577993895556574 ESALYGRRTA 10 Unmodified _ESALYGRRTA_ 0 0 0 tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1 tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1 tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21673583984375 3 375.2 1122.57817 NaN NaN NaN NaN NaN NaN NaN 100.05 1 100.05 99.546 100.55 0 0 0 0 0.22588 1 19625 19625 2.8433 0.10809 1 13443 26291 8662 8665 13597 13597 0.021784582151667564 ESANEPIR 8 Unmodified _ESANEPIR_ 0 0 0 REV__nc|ENSG00000120327|Q9Y5E9-2|PCDHB14 REV__nc|ENSG00000120327|Q9Y5E9-2|PCDHB14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2306213378906 2 458.230156 914.445759 -0.64671 -0.00029634 0.93979 0.00043064 0.29308 0.0001343 458.2305646554005 21.937 0.51357 20.216 20.019 20.533 -1.7211 23 14 2 0 0 0 8448 1 3436 3436 1.7423 0 1 1507100 + 13444 15618 8663 8666 13598 13598 -0.014885665216752386 ESAPGEVIQ 9 Unmodified _ESAPGEVIQ_ 0 0 0 ENSG00000108819|ENST00000612501|PPP1R9B ENSG00000108819|ENST00000612501|PPP1R9B ENSG00000108819|ENST00000612501|PPP1R9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2435607910156 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 25.564 1 25.564 25.064 26.064 0 0 0 0 0.21844 1 4442 4442 18.146 3.3081 1 13445 2495 8664 8667 13599 13599 -0.016911020987663505 ESAPKGGRQ 9 Unmodified _ESAPKGGRQ_ 0 0 0 REV__ENST00000554923.1_2_14:21562562-21562679:-|nuORF REV__ENST00000554923.1_2_14:21562562-21562679:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24310302734375 2 465.243598 928.472643 NaN NaN NaN NaN NaN NaN NaN 27.389 1 25.467 24.967 25.967 -1.9222 0 0 0 0.23508 1 4577 4577 13.042 2.2185 1 + 13446 22980 8665 8668 13600 13600 0.005545420895259667 ESAQCHLQ 8 Unmodified _ESAQCHLQ_ 0 0 0 REV__SH2D4B|p.Q196H|1|0.2|ENSG00000178217|chr10:80588722-80588722|G/C|missense_variant REV__SH2D4B|p.Q196H|1|0.2|ENSG00000178217|chr10:80588722-80588722|G/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23828125 2 458.203084 914.391615 0.2801 0.00012834 1.442 0.00066072 1.7221 0.00078906 458.20373719685193 36.189 0.63578 33.913 33.632 34.267 -2.2766 27 17 2 0 0 0 0.96284 1 6427 6427 13.508 0.97634 1 658250 + 13447 18595 8666 8669 13601 13601 -0.06900481944876447 ESAQFHVIL 9 Unmodified _ESAQFHVIL_ 0 0 0 REV__KLHL4|p.N103S|1|0.62|ENSG00000102271|chrX:87518201-87518201|A/G|missense_variant REV__KLHL4|p.N103S|1|0.62|ENSG00000102271|chrX:87518201-87518201|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2794799804688 2 522.279649 1042.54475 0.5721 0.00029879 -0.33851 -0.0001768 0.23358 0.000122 522.2793804134463 103.16 0.68404 103.16 102.73 103.41 0 37 19 3 0 0 0 0.46541 1 20198 20198 21.747 4.8044 1 2121900 + 13448 23727 8667 8670 13602 13602 0.025174564432290936 ESAQGTPIL 9 Unmodified _ESAQGTPIL_ 0 0 0 ENST00000587483.5_1_17:42391821-42393770:+|nuORF ENST00000587483.5_1_17:42391821-42393770:+|nuORF ENST00000587483.5_1_17:42391821-42393770:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2249755859375 2 458.242732 914.470912 -0.51253 -0.00023486 0.38445 0.00017617 -0.12808 -5.8691E-05 458.2428457487984 36.096 0.45966 33.703 33.52 33.979 -2.3938 21 12 2 0 0 0 0.5059 1 6705 6705 19.257 3.4098 1 1203700 13449 11563 8668 8671 13603 13603 0.010254882809135779 ESAQITHPP 9 Unmodified _ESAQITHPP_ 0 0 0 REV__ENSG00000112339|ENST00000367837|HBS1L REV__ENSG00000112339|ENST00000367837|HBS1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2552185058594 2 490.245806 978.47706 0.369 0.0001809 -3.8395 -0.0018823 -3.4705 -0.0017014 490.24548266349404 20.272 0.3842 18.875 18.688 19.072 -1.3966 13 10 2 0 0 0 0.68435 1 3383 3383 7.2892 0 1 206890 + 13450 15295 8669 8672 13604 13604 -0.013039934875905601 ESAQLQQFQ 9 Unmodified _ESAQLQQFQ_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.260986328125 2 539.76182 1077.50909 0.75583 0.00040797 0.99837 0.00053888 1.7542 0.00094685 539.7625516434124 29.77 1.0512 27.654 27.102 28.154 -2.1167 99 29 4 0 0 0 0.6797 1 5305 5305 7.2892 7.2892 1 13706000 + 13451 15903 8670 8673 13605 13605 -0.02656625804434043 ESAQPGTPGL 10 Unmodified _ESAQPGTPGL_ 0 0 0 REV__TEAD2|p.W172Gfs*6|1|0.43|ENSG00000074219|chr19:49355162-49355162|G/-|frameshift_variant REV__TEAD2|p.W172Gfs*6|1|0.43|ENSG00000074219|chr19:49355162-49355162|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7279357910156 2 478.737814 955.461075 -0.050918 -2.4377E-05 0.0022798 1.0914E-06 -0.048639 -2.3285E-05 478.73783137976795 47.542 1.1958 44.673 44.149 45.345 -2.869 53 33 2 0 0 0 0.26497 1 8903 8903 39.95 7.164 1 1302300 + 13452 14312 8671 8674 13606 13606 -0.018436997244748454 ESAQPGTPGL 10 Unmodified _ESAQPGTPGL_ 0 0 0 REV__TEAD2|p.W172Gfs*6|1|0.43|ENSG00000074219|chr19:49355162-49355162|G/-|frameshift_variant REV__TEAD2|p.W172Gfs*6|1|0.43|ENSG00000074219|chr19:49355162-49355162|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7398681640625 2 478.737814 955.461075 0.0030207 1.4461E-06 -0.64509 -0.00030883 -0.64207 -0.00030738 478.7374090536517 47.72 1.2903 44.778 44.134 45.425 -2.9421 58 36 2 0 0 0 0.44731 1 8604 8604 27.629 3.6082 1 1317200 + 13453 14312 8671 8674 13607 13607 -0.018436997244748454 ESARGHTY 8 Unmodified _ESARGHTY_ 0 0 0 REV__FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant REV__FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22900390625 2 460.714673 919.414794 -0.44804 -0.00020642 0.63767 0.00029378 0.18963 8.7366E-05 460.71410753834255 37.829 0.42072 35.361 35.017 35.438 -2.4688 20 11 3 0 0 0 0.97173 1 6988 6988 18.135 9.5417 1 613780 + 13454 19041 8672 8675 13608 13608 -0.048137198358972455 ESARIHLPG 9 Unmodified _ESARIHLPG_ 0 0 0 REV__ENST00000546123.2_1_1:228362303-228363211:+|nuORF REV__ENST00000546123.2_1_1:228362303-228363211:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2711486816406 2 490.269616 978.524678 NaN NaN NaN NaN NaN NaN NaN 80.524 1 77.014 76.514 77.514 -3.5102 0 0 0 0.23508 1 15726 15726 8.5933 0 1 + 13455 18743 8673 8676 13609 13609 0.03455705503290574 ESARPVADYA 10 Unmodified _ESARPVADYA_ 0 0 0 REV__ENST00000453227.5_2_7:99195922-99202172:+|nuORF REV__ENST00000453227.5_2_7:99195922-99202172:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2635498046875 2 539.76182 1077.50909 0.60509 0.00032661 1.4066 0.00075921 2.0117 0.0010858 539.7627606668727 29.808 1.0502 27.734 27.241 28.291 -2.0743 97 29 4 0 0 0 0.72703 1 5007 5007 13.906 13.906 1 13015000 + 13456 21827 8674 8677 13610 13610 -0.02656625804434043 ESASCLAAEY 10 Unmodified _ESASCLAAEY_ 0 0 0 ENST00000491009.5_1_17:16342705-16344394:+|nuORF;ENST00000475947.6_1_17:16342648-16344739:+|nuORF ENST00000491009.5_1_17:16342705-16344394:+|nuORF ENST00000491009.5_1_17:16342705-16344394:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2708129882812 2 522.221139 1042.42773 0.40971 0.00021396 -0.33667 -0.00017582 0.073034 3.814E-05 522.2208707155662 74.302 0.52048 70.708 70.503 71.023 -3.594 27 14 3 0 0 0 0.83242 1 14169 14169 14.838 7.549 1 1931100 13457 10279 8675 8678 13611 13611 -0.09179069558695119 ESASCLAAEY 10 Unmodified _ESASCLAAEY_ 0 0 0 ENST00000491009.5_1_17:16342705-16344394:+|nuORF;ENST00000475947.6_1_17:16342648-16344739:+|nuORF ENST00000491009.5_1_17:16342705-16344394:+|nuORF ENST00000491009.5_1_17:16342705-16344394:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.221139 1042.42773 -0.5322 -0.00027793 0.44481 0.00023229 -0.087393 -4.5638E-05 522.2213127744857 74.328 0.55546 70.652 70.45 71.005 -3.6764 -0.027837 0.00043785 NaN 14.838 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1756100 13458 10279 8675 8678 -0.09179069558695119 ESASVKSDP 9 Unmodified _ESASVKSDP_ 0 0 0 ENSG00000196782|ENST00000509479|MAML3 ENSG00000196782|ENST00000509479|MAML3 ENSG00000196782|ENST00000509479|MAML3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2340393066406 2 460.221997 918.429441 -0.068308 -3.1437E-05 -0.93077 -0.00042836 -0.99908 -0.0004598 460.2220698542409 43.953 0.76962 41.206 40.905 41.674 -2.7475 42 21 3 0 0 0 0.46541 1 7912 7912 21.747 8.2388 1 613200 13459 7309 8676 8679 13612 13612 -0.03303692478425546 ESATVYHL 8 Unmodified _ESATVYHL_ 0 0 0 SHPRH|p.C1229Y|1|0.28|ENSG00000146414|chr6:145922696-145922696|C/T|missense_variant SHPRH|p.C1229Y|1|0.28|ENSG00000146414|chr6:145922696-145922696|C/T|missense_variant SHPRH|p.C1229Y|1|0.28|ENSG00000146414|chr6:145922696-145922696|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2304992675781 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 75.333 1 71.918 71.418 72.418 -3.4151 0 0 0 0.21452 1 14693 14693 13.508 0.97634 1 13460 25662 8677 8680 13613 13613 -0.017787808905836755 ESAVAWPR 8 Unmodified _ESAVAWPR_ 0 0 0 REV__ENST00000591501.1_1_19:10763903-10764383:-|nuORF REV__ENST00000591501.1_1_19:10763903-10764383:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22552490234375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 102.24 1 98.216 97.716 98.716 -4.0212 0 0 0 0.22692 1 19646 19646 1.4551 0.77368 1 + 13461 23340 8678 8681 13614 13614 0.00036345066178000707 ESAVIKWE 8 Unmodified _ESAVIKWE_ 0 0 0 REV__ENST00000475046.5_1_1:185270368-185270791:-|nuORF REV__ENST00000475046.5_1_1:185270368-185270791:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2372131347656 2 481.2531 960.491647 0.3662 0.00017624 0.18235 8.7755E-05 0.54855 0.00026399 481.25304268097847 20.614 0.39045 19.218 19.072 19.463 -1.3966 22 10 3 0 0 0 0.74398 1 3503 3503 7.9102 0 1 3236700 + 13462 15490 8679 8682 13615 13615 0.00982078660570096 ESCCEPHCC 9 Unmodified _ESCCEPHCC_ 0 0 0 ENSG00000215455|ENST00000400375|KRTAP10-1 ENSG00000215455|ENST00000400375|KRTAP10-1 ENSG00000215455|ENST00000400375|KRTAP10-1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.7669982910156 2 505.645373 1009.27619 NaN NaN NaN NaN NaN NaN NaN 159.07 1 154.27 153.77 154.77 -4.7952 0 0 0 0.19626 1 31631 31631 0.0033805 0 1 13463 7748 8680 8683 13616 13616 -0.22807413454063408 ESCCLCLST 9 Unmodified _ESCCLCLST_ 0 0 0 REV__nc|ENSG00000177338|Q8N7U9|LINC00469 REV__nc|ENSG00000177338|Q8N7U9|LINC00469 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.1278381347656 3 320.127468 957.360574 NaN NaN NaN NaN NaN NaN NaN 103.23 1 99.049 98.549 99.549 -4.1861 0 0 0 0.23508 1 20294 20294 2.7352 1.0826 1 + 13464 24186 8681 8684 13617 13617 -0.11981139365661875 ESCDPLQAT 9 Unmodified _ESCDPLQAT_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7792053222656 2 482.208032 962.401511 0.03982 1.9201E-05 -0.42986 -0.00020728 -0.39004 -0.00018808 482.20791920712486 31.291 1.0156 31.291 30.725 31.741 0 47 28 2 0 0 0 0.44932 1 5603 5603 22.736 1.1993 1 1082200 + 13465 19354 8682 8685 13618 13618 -0.08119338730170966 ESCDPLQAT 9 Unmodified _ESCDPLQAT_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7746887207031 2 482.208032 962.401511 0.064361 3.1035E-05 -0.41873 -0.00020191 -0.35437 -0.00017088 482.20788281818267 33.209 1.071 30.891 30.526 31.596 -2.3175 59 30 2 0 0 0 0.52242 1 6125 6125 22.736 0 1 1426500 + 13466 19354 8682 8685 13619 13619 -0.08119338730170966 ESCDPLQAT 9 Unmodified _ESCDPLQAT_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76885986328125 2 482.208032 962.401511 0.2691 0.00012976 -0.4571 -0.00022042 -0.188 -9.0655E-05 482.20785052097403 33.354 1.186 31.207 30.623 31.809 -2.1468 58 33 2 0 0 0 0.58804 1 5899 5899 13.906 0 1 1074800 + 13467 19354 8682 8685 13620 13620 -0.08119338730170966 ESCDPLQAT 9 Unmodified _ESCDPLQAT_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.769287109375 2 482.208032 962.401511 0.2691 0.00012976 -0.4571 -0.00022042 -0.188 -9.0655E-05 482.20785052097403 33.354 1.186 31.207 30.623 31.809 -2.1468 58 33 2 0 0 0 0.62921 1 5816 5816 18.146 0 1 1074800 + 13468 19354 8682 8685 13621 13621 -0.08119338730170966 ESCDPLQAT 9 Unmodified _ESCDPLQAT_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7701721191406 2 482.208032 962.401511 0.32047 0.00015453 -0.55289 -0.00026661 -0.23242 -0.00011207 482.20773608361196 33.197 1.108 30.981 30.669 31.777 -2.2158 48 31 2 0 0 0 0.76271 1 5835 5835 10.074 0 1 829670 + 13469 19354 8682 8685 13622 13622 -0.08119338730170966 ESCLMVLVT 9 Unmodified _ESCLMVLVT_ 0 0 0 REV__nc|ENSG00000143740|Q5SQN1-3|SNAP47 REV__nc|ENSG00000143740|Q5SQN1-3|SNAP47 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.0058898925781 3 332.169773 993.48749 NaN NaN NaN NaN NaN NaN NaN 105.46 1 101.37 100.87 101.87 -4.0913 0 0 0 0.23508 1 20285 20285 4.5289 0.58447 1 + 13470 24082 8683 8686 13623 13623 -0.009514701489933941 ESCSCCAGCS 10 Unmodified _ESCSCCAGCS_ 0 0 0 ENST00000359680.9_1_X:13731820-13731982:-|nuORF ENST00000359680.9_1_X:13731820-13731982:-|nuORF ENST00000359680.9_1_X:13731820-13731982:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.0897521972656 3 317.088796 948.244558 NaN NaN NaN NaN NaN NaN NaN 157.78 1 152.99 152.49 153.49 -4.7885 0 0 0 0.22588 1 31379 31379 0.15932 0.15932 1 13471 9005 8684 8687 13624 13624 -0.23163406208004744 ESCSNLTWC 9 Unmodified _ESCSNLTWC_ 0 0 0 ENST00000512423.1_1_6:43188499-43188670:+|nuORF;ENST00000515773.5_1_6:43164260-43192180:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9 ENST00000512423.1_1_6:43188499-43188670:+|nuORF ENST00000512423.1_1_6:43188499-43188670:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2687377929688 2 521.70206 1041.38957 -0.33985 -0.0001773 3.0937 0.001614 2.7539 0.0014367 522.2056349631205 72.919 0.25239 69.609 69.526 69.778 -3.3107 8 6 2 0 0 0 0.87258 1 14236 14236 1.8442 0 1 2635400 13472 2704 8685 8688 13625 13625 -0.12947278744991308 ESCTGGMIAS 10 Unmodified _ESCTGGMIAS_ 0 0 0 tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1 tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1 tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72198486328125 2 478.19661 954.378667 -0.22704 -0.00010857 0.1014 4.849E-05 -0.12564 -6.0082E-05 478.1967839297512 40.484 0.89251 37.849 37.471 38.363 -2.6348 52 24 3 0 0 0 0.79872 1 7505 7505 13.906 0 1 40092000 13473 26322 8686 8689 13626 13626 -0.10034681119270772 ESCTGGMIAS 10 Unmodified _ESCTGGMIAS_ 0 0 0 tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1 tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1 tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74432373046875 2 478.19661 954.378667 -0.023019 -1.1008E-05 -0.10728 -5.1303E-05 -0.1303 -6.231E-05 478.1967254171365 40.546 1.0256 38.006 37.394 38.42 -2.5398 56 28 4 0 0 0 0.70987 1 7253 7253 24.021 0 1 18380000 13474 26322 8686 8689 13627 13627 -0.10034681119270772 ESCVGDDDPP 10 Unmodified _ESCVGDDDPP_ 0 0 0 REV__NLRP10|p.G400V|1|0.13|ENSG00000182261|chr11:7960413-7960413|C/A|missense_variant REV__NLRP10|p.G400V|1|0.13|ENSG00000182261|chr11:7960413-7960413|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.1531982421875 3 345.130812 1032.37061 NaN NaN NaN NaN NaN NaN NaN 54.884 1 51.749 51.249 52.249 -3.1352 0 0 0 2.8426 1 10133 10133 0.26539 0 1 + 13475 24365 8687 8690 13628 13628 -0.14428536835066552 ESDAELKGL 9 Unmodified _ESDAELKGL_ 0 0 0 ENST00000407033.2_1_6:56736261-56736483:+|nuORF ENST00000407033.2_1_6:56736261-56736483:+|nuORF ENST00000407033.2_1_6:56736261-56736483:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24639892578125 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 29.835 1 27.718 27.218 28.218 -2.1167 0 0 0 0.17505 1 5372 5372 4.7159 2.0847 1 13476 9549 8688 8691 13629 13629 -0.005428329272717747 ESDDESDSY 9 Unmodified _ESDDESDSY_ 0 0 0 REV__ENSG00000112290|ENST00000392589|WASF1 REV__ENSG00000112290|ENST00000392589|WASF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6760864257812 2 523.675273 1045.33599 NaN NaN NaN NaN NaN NaN NaN 74.728 1 74.728 74.228 75.228 0 0 0 0 0.23508 1 14510 14510 7.9102 2.1497 1 + 13477 15291 8689 8692 13630 13630 -0.18486081442165414 ESDDPSSSYT 10 Unmodified _ESDDPSSSYT_ 0 0 0 REV__ENST00000533927.5_1_1:249149922-249151721:-|nuORF REV__ENST00000533927.5_1_1:249149922-249151721:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.792236328125 2 544.206741 1086.39893 0.21326 0.00011606 0.99268 0.00054022 1.2059 0.00065628 544.2073383266259 94.322 0.52803 90.178 89.82 90.348 -4.1435 25 14 2 0 0 0 0.87854 1 18022 18022 13.906 9.5768 1 1931900 + 13478 18207 8690 8693 13631 13631 -0.14081515654129362 ESDEEWSMNKK 11 Unmodified _ESDEEWSMNKK_ 0 0 0 ENSG00000152404|ENST00000282251|CWF19L2 ENSG00000152404|ENST00000282251|CWF19L2 ENSG00000152404|ENST00000282251|CWF19L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5371398925781 3 461.534608 1381.58199 NaN NaN NaN NaN NaN NaN NaN 33.437 1 31.12 30.62 31.62 -2.3175 0 0 0 0.22632 1 6114 6114 0.03141 0 1 13479 4920 8691 8694 13632 13632 -0.0935328486398248 ESDEFHNY 8 Unmodified _ESDEFHNY_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 521.1187133789062 2 520.701429 1039.3883 -0.54292 -0.0002827 0.48989 0.00025509 -0.053024 -2.761E-05 520.7016852427776 35.407 0.6557 33.154 32.846 33.501 -2.2527 31 18 3 0 0 0 1.0249 1 6301 6301 0.69038 0 1 3027700 + 13480 19439 8692 8695 13633 13633 -0.12981453517909358 ESDFEFEY 8 Unmodified _ESDFEFEY_ 0 0 0 FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant;ENSG00000073910|ENST00000542859|FRY FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.284423828125 2 533.206012 1064.39747 NaN NaN NaN NaN NaN NaN NaN 46.149 1 43.284 42.784 43.784 -2.8653 0 0 0 0.21486 1 8382 8382 5.7604 0 1 13481 1489 8693 8696 13634 13634 -0.13215104952223555 ESDGDRIEIF 10 Unmodified _ESDGDRIEIF_ 0 0 0 REV__NRP2|p.R688Vfs*6|1|0.02|ENSG00000118257|chr2:205763690-205763691|-/GTAT|frameshift_variant REV__NRP2|p.R688Vfs*6|1|0.02|ENSG00000118257|chr2:205763690-205763691|-/GTAT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.25732421875 2 590.777667 1179.54078 0.42105 0.00024875 -0.067687 -3.9988E-05 0.35337 0.00020876 590.7776383670578 90.554 0.38489 86.694 86.476 86.861 -3.8595 16 10 2 0 0 0 0.86856 1 17735 17735 11.495 0 1 844550 + 13482 15547 8694 8697 13635 13635 -0.041806778411455525 ESDGDRIEIF 10 Unmodified _ESDGDRIEIF_ 0 0 0 REV__NRP2|p.R688Vfs*6|1|0.02|ENSG00000118257|chr2:205763690-205763691|-/GTAT|frameshift_variant REV__NRP2|p.R688Vfs*6|1|0.02|ENSG00000118257|chr2:205763690-205763691|-/GTAT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.265869140625 2 590.777667 1179.54078 0.16967 0.00010024 0.48306 0.00028538 0.65273 0.00038562 591.2795453379649 90.591 0.38556 86.813 86.502 86.888 -3.7779 13 10 2 0 0 0 0.764 1 17292 17292 23.79 5.4167 1 639000 + 13483 15547 8694 8697 13636 13636 -0.041806778411455525 ESDGKSRWFY 10 Unmodified _ESDGKSRWFY_ 0 0 0 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2379455566406 3 425.531527 1273.57275 0.21879 9.3103E-05 -0.14263 -6.0694E-05 0.076161 3.2409E-05 425.5314502497733 86.039 1.8583 82.089 81.526 83.385 -3.9503 140 52 4 0 0 0 0.39339 1 16331 16331 44.945 32.089 1 24352000 13484 4658 8695 8698 13637 13637 -0.053092653673502355 ESDGKSRWFY 10 Unmodified _ESDGKSRWFY_ 0 0 0 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24237060546875 3 425.531527 1273.57275 -0.21321 -9.0726E-05 0.33172 0.00014116 0.11852 5.0432E-05 425.5316277602059 85.718 1.7809 81.989 81.446 83.227 -3.7289 150 50 4 0 0 0 1.1276 1 16599 16599 6.6304 3.5581 1 22210000 13485 4658 8695 8698 13638 13638 -0.053092653673502355 ESDGKSRWFY 10 Unmodified _ESDGKSRWFY_ 0 0 0 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 425.531527 1273.57275 0.36148 0.00015382 -0.23956 -0.00010194 0.12193 5.1884E-05 425.5314141452687 81.963 1.3612 81.963 81.58 82.942 0 -0.050306 -0.00025297 NaN 44.945 121 38 4 NaN NaN NaN NaN 0 NaN NaN 0 29385000 13486 4658 8695 8698 -0.053092653673502355 ESDINSVRY 9 Unmodified _ESDINSVRY_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF nc|ENSG00000069966|O14775-3|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF nc|ENSG00000069966|O14775-3|GNB5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2842407226562 2 541.759278 1081.504 0.54655 0.0002961 -0.35686 -0.00019333 0.18969 0.00010277 541.7590349210177 49.669 0.90205 49.669 49.125 50.028 0 83 25 5 0 0 0 0.00090544 1 9388 9388 142.08 87.306 1 41220000 13487 1421;11275 8696 8699 13639 13639 -0.033489296670495605 ESDINSVRY 9 Unmodified _ESDINSVRY_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF nc|ENSG00000069966|O14775-3|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF nc|ENSG00000069966|O14775-3|GNB5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.274169921875 2 541.759278 1081.504 0.022985 1.2452E-05 0.80252 0.00043477 0.82551 0.00044723 541.7596545561815 52.582 0.72698 49.698 49.377 50.104 -2.8837 73 20 5 0 0 0 0.00090544 1 10024 10024 142.08 87.306 1 53448000 13488 1421;11275 8696 8699 13640 13640 -0.033489296670495605 ESDINSVRY 9 Unmodified _ESDINSVRY_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF nc|ENSG00000069966|O14775-3|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF nc|ENSG00000069966|O14775-3|GNB5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2608642578125 2 541.759278 1081.504 0.095297 5.1628E-05 0.7105 0.00038492 0.8058 0.00043655 541.7596075092699 52.801 0.94165 49.714 49.202 50.144 -3.0876 78 26 4 0 0 0 0.029747 1 9750 9750 99.755 63.628 1 50178000 13489 1421;11275 8696 8699 13641 13641 -0.033489296670495605 ESDISNHEY 9 Unmodified _ESDISNHEY_ 0 0 0 REV__nc|ENSG00000127870|Q9Y252-2|RNF6 REV__nc|ENSG00000127870|Q9Y252-2|RNF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7867431640625 2 547.225268 1092.43598 0.33022 0.0001807 1.5796 0.0008644 1.9098 0.0010451 547.7275987533505 136.22 0.66844 136.22 135.95 136.62 0 26 18 2 0 0 0 0.58699 1 26978 26978 32.305 5.4218 1 4495900 + 13490 15900 8697 8700 13642 13642 -0.10653799317719859 ESDISNHEY 9 Unmodified _ESDISNHEY_ 0 0 0 REV__nc|ENSG00000127870|Q9Y252-2|RNF6 REV__nc|ENSG00000127870|Q9Y252-2|RNF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7903442382812 2 547.225268 1092.43598 0.239 0.00013079 0.87882 0.00048091 1.1178 0.0006117 547.2259350819313 141.31 0.69283 136.66 136.26 136.95 -4.6493 42 19 4 0 0 0 0.58699 1 27939 27939 32.305 5.4218 1 6369900 + 13491 15900 8697 8700 13643 13643 -0.10653799317719859 ESDISNHEY 9 Unmodified _ESDISNHEY_ 0 0 0 REV__nc|ENSG00000127870|Q9Y252-2|RNF6 REV__nc|ENSG00000127870|Q9Y252-2|RNF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7899780273438 2 547.225268 1092.43598 0.11136 6.0941E-05 1.6688 0.00091322 1.7802 0.00097416 547.2261454648673 141.57 0.70349 136.58 136.2 136.91 -4.9877 32 19 2 0 0 0 0.58699 1 27314 27314 32.305 5.4218 1 6650200 + 13492 15900 8697 8700 13644 13644 -0.10653799317719859 ESDKFICI 8 Unmodified _ESDKFICI_ 0 0 0 nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant;CLTCL1|p.R41Q|1|0.39|ENSG00000070371|chr22:19275751-19275751|C/T|missense_variant;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.P253Sfs*7|1|0.11|ENSG00000070371|chr22:19239313-19239314|-/A|frameshift_variant;CLTCL1|p.M473Ifs*76|1|0.05|ENSG00000070371|chr22:19233268-19233269|-/TCGG|frameshift_variant;CLTCL1|p.T738Qfs*24|1|0.03|ENSG00000070371|chr22:19223971-19223972|-/TTCTG|frameshift_variant nc|ENSG00000141367|Q00610-2|CLTC;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant nc|ENSG00000141367|Q00610-2|CLTC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7242126464844 2 477.733686 953.452819 -0.052579 -2.5119E-05 -0.81855 -0.00039105 -0.87112 -0.00041617 477.7333061194906 90.971 0.8201 87.111 86.721 87.541 -3.8595 31 23 2 0 0 0 0.66265 2 17743 17743;17808 18.135 0 1 1235400 13493 4356;588 8698 8701 13645;13646 13645 -0.02576969965457465 ESDKFICI 8 Unmodified _ESDKFICI_ 0 0 0 nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant;CLTCL1|p.R41Q|1|0.39|ENSG00000070371|chr22:19275751-19275751|C/T|missense_variant;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.P253Sfs*7|1|0.11|ENSG00000070371|chr22:19239313-19239314|-/A|frameshift_variant;CLTCL1|p.M473Ifs*76|1|0.05|ENSG00000070371|chr22:19233268-19233269|-/TCGG|frameshift_variant;CLTCL1|p.T738Qfs*24|1|0.03|ENSG00000070371|chr22:19223971-19223972|-/TTCTG|frameshift_variant nc|ENSG00000141367|Q00610-2|CLTC;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant nc|ENSG00000141367|Q00610-2|CLTC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.733686 953.452819 0.30967 0.00014794 -1.1826 -0.00056497 -0.87293 -0.00041703 477.7330246211383 91.078 0.75365 86.983 86.708 87.461 -4.0946 -0.092916 -8.4107E-05 NaN 18.135 31 21 2 NaN NaN NaN NaN 0 NaN NaN 0 859650 13494 4356;588 8698 8701 -0.02576969965457465 ESDKFICI 8 Unmodified _ESDKFICI_ 0 0 0 nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant;CLTCL1|p.R41Q|1|0.39|ENSG00000070371|chr22:19275751-19275751|C/T|missense_variant;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.P253Sfs*7|1|0.11|ENSG00000070371|chr22:19239313-19239314|-/A|frameshift_variant;CLTCL1|p.M473Ifs*76|1|0.05|ENSG00000070371|chr22:19233268-19233269|-/TCGG|frameshift_variant;CLTCL1|p.T738Qfs*24|1|0.03|ENSG00000070371|chr22:19223971-19223972|-/TTCTG|frameshift_variant nc|ENSG00000141367|Q00610-2|CLTC;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant nc|ENSG00000141367|Q00610-2|CLTC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.733686 953.452819 0.15876 7.5845E-05 -1.2575 -0.00060074 -1.0987 -0.0005249 477.73298773734024 90.912 0.76384 87.134 86.711 87.475 -3.7779 0.058059 -0.00015565 NaN 18.135 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 986520 13495 4356;588 8698 8701 -0.02576969965457465 ESDLAKKE 8 Unmodified _ESDLAKKE_ 0 0 0 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2460021972656 2 460.24019 918.465826 -0.090265 -4.1544E-05 0.10569 4.8643E-05 0.015424 7.0989E-06 460.24030012327313 47.941 0.55349 44.991 44.708 45.261 -2.9499 20 15 2 0 0 0 0.54916 1 8788 8788 25.399 0.40835 1 954230 13496 7825 8699 8702 13647 13647 0.0033318441828669165 ESDLQLTLY 9 Unmodified _ESDLQLTLY_ 0 0 0 REV__nc|ENSG00000164066|Q9ULD6-4|INTU REV__nc|ENSG00000164066|Q9ULD6-4|INTU MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2719116210938 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 146.95 1 142.26 141.76 142.76 -4.6868 0 0 0 0.070386 1 29150 29150 43.858 0 1 + 13497 17643 8700 8703 13648 13648 -0.0031399072172462184 ESDLRVRDG 9 Unmodified _ESDLRVRDG_ 0 0 0 REV__ENSG00000139648|ENST00000267119|KRT71;REV__CON__Q6IME9 REV__ENSG00000139648|ENST00000267119|KRT71 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 349.1749572753906 3 349.512355 1045.51524 -0.40247 -0.00014067 -1.3455 -0.00047027 -1.748 -0.00061093 349.51178981415467 50.015 0.70015 47.134 46.729 47.429 -2.8811 27 19 2 0 0 0 0.58921 1 9516 9516 8.1555 0 1 499590 + + 13498 13545;13553 8701 8704 13649 13649 -0.00570107572912093 ESDLRVRDG 9 Unmodified _ESDLRVRDG_ 0 0 0 REV__ENSG00000139648|ENST00000267119|KRT71;REV__CON__Q6IME9 REV__ENSG00000139648|ENST00000267119|KRT71 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 349.512355 1045.51524 0.051481 1.7993E-05 -1.9003 -0.00066418 -1.8488 -0.00064618 349.5116074752855 47.3 0.52493 47.3 46.98 47.505 0 0.071773 -0.00022593 NaN 8.1555 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 522400 + + 13499 13545;13553 8701 8704 -0.00570107572912093 ESDLRVRDG 9 Unmodified _ESDLRVRDG_ 0 0 0 REV__ENSG00000139648|ENST00000267119|KRT71;REV__CON__Q6IME9 REV__ENSG00000139648|ENST00000267119|KRT71 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 349.512355 1045.51524 0.03953 1.3816E-05 -2.0385 -0.00071246 -1.9989 -0.00069865 349.51159247560236 50.295 0.50227 47.25 46.958 47.46 -3.0453 0.021733 -0.0003708 NaN 8.1555 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 732800 + + 13500 13545;13553 8701 8704 -0.00570107572912093 ESDQEREA 8 Unmodified _ESDQEREA_ 0 0 0 ENSG00000172404|ENST00000307221|DNAJB7 ENSG00000172404|ENST00000307221|DNAJB7 ENSG00000172404|ENST00000307221|DNAJB7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77252197265625 2 482.204335 962.394118 0.015111 7.2867E-06 -0.43569 -0.00021009 -0.42058 -0.00020281 482.20401865429085 44.973 0.81664 42.108 41.805 42.622 -2.8653 32 22 2 0 0 0 1.0147 1 8176 8176 5.2307 2.9279 1 2200800 13501 6220 8702 8705 13650 13650 -0.08858355006225338 ESDQLNIYI 9 Unmodified _ESDQLNIYI_ 0 0 0 ENSG00000141434|ENST00000269202|MEP1B ENSG00000141434|ENST00000269202|MEP1B ENSG00000141434|ENST00000269202|MEP1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.772705078125 2 547.771854 1093.52915 0.54468 0.00029836 0.52933 0.00028995 1.074 0.00058831 547.7723670110905 82.702 0.2708 82.702 82.568 82.839 0 12 7 2 0 0 0 0.57447 1 16095 16095 14.838 1.7958 1 1231700 13502 4364 8703 8706 13651 13651 -0.013868748644881634 ESDQLNIYI 9 Unmodified _ESDQLNIYI_ 0 0 0 ENSG00000141434|ENST00000269202|MEP1B ENSG00000141434|ENST00000269202|MEP1B ENSG00000141434|ENST00000269202|MEP1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7715454101562 2 547.771854 1093.52915 0.30332 0.00016615 -0.77154 -0.00042263 -0.46822 -0.00025648 547.7714177669136 86.681 0.59415 82.731 82.401 82.995 -3.9503 39 16 3 0 0 0 0.57447 1 16502 16502 14.838 0.93222 1 5787100 13503 4364 8703 8706 13652 13652 -0.013868748644881634 ESDQYCYGY 9 Unmodified _ESDQYCYGY_ 0 0 0 REV__PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant REV__PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 376.1800842285156 3 376.471057 1126.39134 -0.16749 -6.3056E-05 -1.7434 -0.00065634 -1.9109 -0.00071939 376.47231543980837 72.811 0.91001 72.811 72.575 73.485 0 107 25 6 0 0 0 0.6035 1 14096 14096 4.477 2.5495 1 5630900 + 13504 17536 8704 8707 13653 13653 -0.16679946455383288 ESDSAQRQG 9 Unmodified _ESDSAQRQG_ 0 0 0 REV__ENSG00000169217|ENST00000305596|CD2BP2 REV__ENSG00000169217|ENST00000305596|CD2BP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.7790222167969 2 489.217777 976.421001 0.71846 0.00035148 -0.27022 -0.0001322 0.44824 0.00021929 489.21768409717174 121.12 0.53026 116.43 116.24 116.77 -4.6873 23 14 2 0 0 0 0.47976 1 23237 23237 0.37959 0 1 1959100 + 13505 18085 8705 8708 13654 13654 -0.06815246395035501 ESDSSDSGQPA 11 Unmodified _ESDSSDSGQPA_ 0 0 0 REV__nc|ENSG00000115041|Q9Y2W7-2|KCNIP3 REV__nc|ENSG00000115041|Q9Y2W7-2|KCNIP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 540.1465454101562 2 540.209815 1078.40508 NaN NaN NaN NaN NaN NaN NaN 31.579 1 29.552 29.052 30.052 -2.0264 0 0 0 0.23634 1 5455 5455 3.2813 0.39209 1 + 13506 15397 8706 8709 13655 13655 -0.1309899742259404 ESDTVTSIK 9 Unmodified _ESDTVTSIK_ 0 0 0 REV__ENST00000513444.1_1_4:165837736-165838132:+|nuORF REV__ENST00000513444.1_1_4:165837736-165838132:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2523498535156 2 490.250754 978.486955 NaN NaN NaN NaN NaN NaN NaN 24.873 1 24.873 24.373 25.373 0 0 0 0 0.23508 1 4295 4295 10.824 0 1 + 13507 18837 8707 8710 13656 13656 -0.003148502728436142 ESDVQNRFV 9 Unmodified _ESDVQNRFV_ 0 0 0 REV__ENSG00000244509|ENST00000361441|APOBEC3C REV__ENSG00000244509|ENST00000361441|APOBEC3C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7694091796875 2 547.26727 1092.51999 0.13261 7.2573E-05 0.65281 0.00035726 0.78542 0.00042983 547.2677413858563 44.022 1.0089 41.231 40.736 41.745 -2.79 65 28 4 0 0 0 0.54354 1 8303 8303 16.942 0 1 5114600 + 13508 19812 8708 8711 13657 13657 -0.022572234301378558 ESDYDAFAPYP 11 Unmodified _ESDYDAFAPYP_ 0 0 0 DHX34|p.P760Qfs*12|1|0.35|ENSG00000134815|chr19:47375674-47375674|C/-|frameshift_variant;ENSG00000134815|ENST00000328771|DHX34 DHX34|p.P760Qfs*12|1|0.35|ENSG00000134815|chr19:47375674-47375674|C/-|frameshift_variant DHX34|p.P760Qfs*12|1|0.35|ENSG00000134815|chr19:47375674-47375674|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25115966796875 3 425.511909 1273.5139 0.06095 2.5935E-05 -0.040651 -1.7297E-05 0.0203 8.6378E-06 425.51184364605314 60.968 0.55379 57.598 57.343 57.896 -3.3694 23 14 2 0 0 0 0.95898 1 11374 11374 10.315 10.315 1 1184800 13509 830 8709 8712 13658 13658 -0.11191786452332053 ESDYFRYYKVN 11 Unmodified _ESDYFRYYKVN_ 0 0 0 ENSG00000197930|ENST00000395686|ERO1A ENSG00000197930|ENST00000395686|ERO1A ENSG00000197930|ENST00000395686|ERO1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 495.243408203125 3 495.233258 1482.67794 NaN NaN NaN NaN NaN NaN NaN 93.134 1 88.99 88.49 89.49 -4.1435 0 0 0 0.22632 1 17750 17750 0.03141 0 1 13510 7411 8710 8713 13659 13659 -0.04408768961570786 ESEALGGPGQV 11 Unmodified _ESEALGGPGQV_ 0 0 0 ENSG00000175595|ENST00000311895|ERCC4;ERCC4|p.K632Nfs*3|1|0.14|ENSG00000175595|chr16:13937846-13937846|A/-|frameshift_variant ENSG00000175595|ENST00000311895|ERCC4 ENSG00000175595|ENST00000311895|ERCC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2802124023438 2 522.253828 1042.4931 0.70461 0.00036798 0.93729 0.0004895 1.6419 0.00085749 522.2543238342804 109.44 0.45483 105.25 104.98 105.44 -4.1826 13 12 2 0 0 0 0.83822 1 21050 21050 14.405 5.0223 1 596190 13511 6423 8711 8714 13660 13660 -0.026443320413136462 ESEALGGPGQV 11 Unmodified _ESEALGGPGQV_ 0 0 0 ENSG00000175595|ENST00000311895|ERCC4;ERCC4|p.K632Nfs*3|1|0.14|ENSG00000175595|chr16:13937846-13937846|A/-|frameshift_variant ENSG00000175595|ENST00000311895|ERCC4 ENSG00000175595|ENST00000311895|ERCC4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.253828 1042.4931 -0.91291 -0.00047677 2.0497 0.0010705 1.1368 0.00059368 522.2548431897908 109.75 0.57408 105.3 104.91 105.49 -4.4518 0.022234 0.00039987 NaN 14.405 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 959350 13512 6423 8711 8714 -0.026443320413136462 ESEAWLSP 8 Unmodified _ESEAWLSP_ 0 0 0 REV__ENSG00000121410|ENST00000263100|A1BG REV__ENSG00000121410|ENST00000263100|A1BG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24737548828125 2 459.713808 917.413062 0.11909 5.4748E-05 -1.6303 -0.00074946 -1.5112 -0.00069472 459.7128329627021 74.763 1.0045 71.087 70.551 71.556 -3.6764 37 28 2 0 0 0 0.58432 1 14068 14068 23.148 2.6948 1 878140 + 13513 15657 8712 8715 13661 13661 -0.048947736445143164 ESEDEEDDENY 11 Unmodified _ESEDEEDDENY_ 0 0 0 REV__RAG2|p.K499Sfs*4|2|0.32|ENSG00000175097|chr11:36592673-36592673|T/-|frameshift_variant REV__RAG2|p.K499Sfs*4|2|0.32|ENSG00000175097|chr11:36592673-36592673|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2401428222656 3 458.488158 1372.44264 0.58072 0.00026625 2.4044 0.0011024 2.9851 0.0013686 458.824238851174 112.49 0.13938 108.22 108.11 108.25 -4.2725 5 3 2 0 0 0 0.96216 1 21643 21643 0.45452 0 1 364150 + 13514 18454 8713 8716 13662 13662 -0.2286799573830649 ESEDEESEEP 10 Unmodified _ESEDEESEEP_ 0 0 0 ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B ENSG00000132510|ENST00000448097|KDM6B ENSG00000132510|ENST00000448097|KDM6B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.253173828125 2 590.21222 1178.40989 0.48386 0.00028558 0.31984 0.00018877 0.8037 0.00047435 590.2123959015047 33.283 1.0034 30.966 30.593 31.596 -2.3175 74 28 4 0 0 0 0.91149 1 6013 6013 6.7232 0 1 5100800 13515 3736 8714 8717 13663 13663 -0.1721815807047733 ESEEGSSFEPY 11 Unmodified _ESEEGSSFEPY_ 0 0 0 REV__PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant REV__PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7509765625 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 26.968 1 26.968 26.468 27.468 0 0 0 0 0.224 1 4741 4741 13.042 4.2971 1 + 13516 18359 8715 8718 13664 13664 -0.13636984557183496 ESEEGSSFEPY 11 Unmodified _ESEEGSSFEPY_ 0 0 0 REV__PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant REV__PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.76318359375 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 27.07 1 27.07 26.57 27.57 0 0 0 0 0.22943 1 4762 4762 8.7454 2.5396 1 + 13517 18359 8715 8718 13665 13665 -0.13636984557183496 ESEELPRP 8 Unmodified _ESEELPRP_ 0 0 0 NPAS4|p.A386E|1|0.19|ENSG00000174576|chr11:66424047-66424047|C/A|missense_variant NPAS4|p.A386E|1|0.19|ENSG00000174576|chr11:66424047-66424047|C/A|missense_variant NPAS4|p.A386E|1|0.19|ENSG00000174576|chr11:66424047-66424047|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7378234863281 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 48.134 1 45.265 44.765 45.765 -2.869 0 0 0 0.21452 1 9104 9104 13.508 0.46542 1 13518 12705 8716 8719 13666 13666 -0.018436997244634767 ESEELPRP 8 Unmodified _ESEELPRP_ 0 0 0 NPAS4|p.A386E|1|0.19|ENSG00000174576|chr11:66424047-66424047|C/A|missense_variant NPAS4|p.A386E|1|0.19|ENSG00000174576|chr11:66424047-66424047|C/A|missense_variant NPAS4|p.A386E|1|0.19|ENSG00000174576|chr11:66424047-66424047|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7378845214844 2 478.737814 955.461075 0.0030207 1.4461E-06 -0.64509 -0.00030883 -0.64207 -0.00030738 478.7374090536517 47.72 1.2903 44.778 44.134 45.425 -2.9421 58 36 2 0 0 0 8448 1 8699 8699 9.544 6.9127 1 1317200 13519 12705 8716 8719 13667 13667 -0.018436997244634767 ESEIDQLF 8 Unmodified _ESEIDQLF_ 0 0 0 nc|ENSG00000008086|O76039-1|CDKL5;ENSG00000008086|ENST00000623535|CDKL5 nc|ENSG00000008086|O76039-1|CDKL5 nc|ENSG00000008086|O76039-1|CDKL5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26983642578125 2 490.732197 979.449842 0.084232 4.1335E-05 0.72532 0.00035594 0.80955 0.00039727 490.73248316815545 121.94 0.57274 117.41 117.15 117.72 -4.5305 19 15 2 0 0 0 0.9455 1 23490 23490 16.942 2.3606 1 976440 13520 12205 8717 8720 13668 13668 -0.04070521818607631 ESEIDQLF 8 Unmodified _ESEIDQLF_ 0 0 0 nc|ENSG00000008086|O76039-1|CDKL5;ENSG00000008086|ENST00000623535|CDKL5 nc|ENSG00000008086|O76039-1|CDKL5 nc|ENSG00000008086|O76039-1|CDKL5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.732197 979.449842 0.62175 0.00030511 0.36159 0.00017744 0.98334 0.00048256 490.7322338262857 122.13 0.45233 117.45 117.16 117.61 -4.6873 0.017447 -0.00018207 NaN 16.942 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 896720 13521 12205 8717 8720 -0.04070521818607631 ESEKILNKY 9 Unmodified _ESEKILNKY_ 0 0 0 CCDC141|p.A1228Hfs*19|1|0.36|ENSG00000163492|chr2:178837541-178837541|A/-|frameshift_variant;nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141;CCDC141|p.M954Cfs*4|1|0.31|ENSG00000163492|chr2:178856262-178856262|T/-|frameshift_variant CCDC141|p.A1228Hfs*19|1|0.36|ENSG00000163492|chr2:178837541-178837541|A/-|frameshift_variant CCDC141|p.A1228Hfs*19|1|0.36|ENSG00000163492|chr2:178837541-178837541|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2042541503906 3 375.20464 1122.59209 NaN NaN NaN NaN NaN NaN NaN 50.676 1 47.63 47.13 48.13 -3.0453 0 0 0 0.23508 1 9290 9290 7.1017 1.8048 1 13522 411 8718 8721 13669 13669 0.03569690923586677 ESEKQFQEA 9 Unmodified _ESEKQFQEA_ 0 0 0 ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8 ENST00000552128.2_1_12:71519116-71532942:-|nuORF ENST00000552128.2_1_12:71519116-71532942:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7828979492188 2 548.251286 1094.48802 0.15941 8.7396E-05 1.2582 0.00068984 1.4177 0.00077723 548.2512284274897 84.18 0.92833 80.516 80.059 80.987 -3.6641 35 26 2 0 0 0 0.52242 1 16445 16445 22.736 2.3217 1 2880800 13523 3470 8719 8722 13670 13670 -0.05544635903925155 ESEKRSSNFMY 11 Unmodified _ESEKRSSNFMY_ 0 0 0 ENSG00000078142|ENST00000262039|PIK3C3;PIK3C3|p.Q259Rfs*7|1|0.19|ENSG00000078142|chr18:41993326-41993326|C/-|frameshift_variant;PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant ENSG00000078142|ENST00000262039|PIK3C3 ENSG00000078142|ENST00000262039|PIK3C3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2479553222656 3 459.874965 1376.60306 0.22714 0.00010446 0.51408 0.00023641 0.74121 0.00034087 459.8751404987017 131.99 0.62039 131.99 131.64 132.26 0 41 17 3 0 0 0 0.80759 1 26023 26023 2.6312 0 1 4459500 13524 1571 8720 8723 13671 13671 -0.07017274764461945 ESELFFFF 8 Unmodified _ESELFFFF_ 0 0 0 REV__STAG2|p.V465F|1|0.11|ENSG00000101972|chrX:124057954-124057954|G/T|missense_variant REV__STAG2|p.V465F|1|0.11|ENSG00000101972|chrX:124057954-124057954|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2794189453125 2 533.250026 1064.4855 -0.27302 -0.00014559 2.1054 0.0011227 1.8324 0.00097714 533.7516800931216 24.089 0.34476 22.236 21.985 22.329 -1.8534 17 9 3 0 0 0 0.96284 1 3907 3907 4.756 0.81161 1 563870 + 13525 24743 8721 8724 13672 13672 -0.044164395709458404 ESELLFRKG 9 Unmodified _ESELLFRKG_ 0 0 0 REV__ENSG00000114853|ENST00000232974|ZBTB47 REV__ENSG00000114853|ENST00000232974|ZBTB47 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2011413574219 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 52.954 1 52.954 52.454 53.454 0 0 0 0 0.23508 1 10073 10073 4.897 2.0537 1 + 13526 15391 8722 8725 13673 13673 0.0461712798901317 ESELLFRKG 9 Unmodified _ESELLFRKG_ 0 0 0 REV__ENSG00000114853|ENST00000232974|ZBTB47 REV__ENSG00000114853|ENST00000232974|ZBTB47 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 85.427 1 85.427 84.927 85.927 0 0 0 0 0.23508 1 16672 16672 4.897 2.1618 1 + 13527 15391 8722 8725 13674 13674 0.0461712798901317 ESELLFRKG 9 Unmodified _ESELLFRKG_ 0 0 0 REV__ENSG00000114853|ENST00000232974|ZBTB47 REV__ENSG00000114853|ENST00000232974|ZBTB47 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 99.729 1 99.729 99.229 100.23 0 0 0 0 0.23508 1 19557 19557 4.897 2.3985 1 + 13528 15391 8722 8725 13675 13675 0.0461712798901317 ESELLFRKG 9 Unmodified _ESELLFRKG_ 0 0 0 REV__ENSG00000114853|ENST00000232974|ZBTB47 REV__ENSG00000114853|ENST00000232974|ZBTB47 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 103.91 1 99.692 99.192 100.19 -4.2183 0 0 0 0.23508 1 20432 20432 4.897 2.3985 1 + 13529 15391 8722 8725 13676 13676 0.0461712798901317 ESELLFRKG 9 Unmodified _ESELLFRKG_ 0 0 0 REV__ENSG00000114853|ENST00000232974|ZBTB47 REV__ENSG00000114853|ENST00000232974|ZBTB47 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2174072265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 109.33 1 104.95 104.45 105.45 -4.3776 0 0 0 0.23508 1 21547 21547 4.897 2.1618 1 + 13530 15391 8722 8725 13677 13677 0.0461712798901317 ESELLFRKG 9 Unmodified _ESELLFRKG_ 0 0 0 REV__ENSG00000114853|ENST00000232974|ZBTB47 REV__ENSG00000114853|ENST00000232974|ZBTB47 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 81.215 1 77.528 77.028 78.028 -3.6879 0 0 0 0.23508 1 15475 15475 4.5289 1.5336 1 + 13531 15391 8722 8725 13678 13678 0.0461712798901317 ESELWSAP 8 Unmodified _ESELWSAP_ 0 0 0 AMPD2|p.R87W|1|0.26|ENSG00000116337|chr1:109625308-109625308|C/T|missense_variant AMPD2|p.R87W|1|0.26|ENSG00000116337|chr1:109625308-109625308|C/T|missense_variant AMPD2|p.R87W|1|0.26|ENSG00000116337|chr1:109625308-109625308|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2387390136719 2 459.713808 917.413062 0.11909 5.4748E-05 -1.6303 -0.00074946 -1.5112 -0.00069472 459.7128329627021 74.763 1.0045 71.087 70.551 71.556 -3.6764 37 28 2 0 0 0 0.97966 1 14192 14192 16.942 2.104 1 878140 13532 151 8723 8726 13679 13679 -0.04894773644525685 ESEMEEPL 8 Unmodified _ESEMEEPL_ 0 0 0 ENSG00000182583|ENST00000688183|VCX;nc|ENSG00000205642|Q9H321-2|VCX3B;ENSG00000205642|ENST00000381032|VCX3B ENSG00000182583|ENST00000688183|VCX ENSG00000182583|ENST00000688183|VCX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7656555175781 2 482.202415 962.390278 0.36346 0.00017526 0.34309 0.00016544 0.70655 0.0003407 482.20250202056457 91.098 1.1053 87.003 86.6 87.706 -4.0946 48 31 2 0 0 0 0.76728 1 17472 17472 5.7604 0 1 3239100 13533 6798 8724 8727 13680 13680 -0.09242160824294388 ESEMTRCT 8 Unmodified _ESEMTRCT_ 0 0 0 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7209167480469 2 478.694235 955.373916 -0.010128 -4.8482E-06 1.4011 0.00067071 1.391 0.00066587 478.69483848097616 26.758 0.7852 26.758 26.259 27.044 0 32 22 2 0 0 0 0.66247 1 4645 4645 18.146 0.011366 1 704090 + 13534 19641 8725 8728 13681 13681 -0.10555565262052369 ESEMTRCT 8 Unmodified _ESEMTRCT_ 0 0 0 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73138427734375 2 478.694235 955.373916 0.26646 0.00012755 0.71348 0.00034154 0.97994 0.00046909 478.6946391049477 28.222 0.73465 26.467 26.211 26.946 -1.7552 37 20 2 0 0 0 0.44108 1 4735 4735 30.637 0.41173 1 769670 + 13535 19641 8725 8728 13682 13682 -0.10555565262052369 ESENYALRV 9 Unmodified _ESENYALRV_ 0 0 0 REV__CAMKK1|p.R152K|1|0.27|ENSG00000004660|chr17:3883891-3883891|C/T|missense_variant REV__CAMKK1|p.R152K|1|0.27|ENSG00000004660|chr17:3883891-3883891|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2847290039062 2 540.769645 1079.52474 0.30348 0.00016411 0.65958 0.00035668 0.96306 0.00052079 540.7698592011794 62.442 0.59122 59.202 58.966 59.557 -3.2395 28 16 2 0 0 0 0.5059 1 11749 11749 19.257 4.4187 1 1268500 + 13536 13245 8726 8729 13683 13683 -0.011843392873743142 ESEPGRGAQY 10 Unmodified _ESEPGRGAQY_ 0 0 0 OBSL1-MRPL2|1|fusion;ENST00000491898.5_1_6:43023605-43023818:-|nuORF;MRPL2|p.M292*|1|0.49|ENSG00000112651|chr6:43054319-43054319|G/-|frameshift_variant;ENSG00000112651|ENST00000388752|MRPL2 OBSL1-MRPL2|1|fusion OBSL1-MRPL2|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7723999023438 2 547.249077 1092.4836 0.29862 0.00016342 -0.079665 -4.3597E-05 0.21896 0.00011982 547.2490597754779 19.794 1.5064 19.794 19.31 20.816 0 138 42 5 0 0 0 7.2577E-11 2 3210 3206;3210 152.89 77.125 1 56456000 13537 12722 8727 8730 13684;13685 13685 -0.058941003268500936 ESEPGRGAQY 10 Unmodified _ESEPGRGAQY_ 0 0 0 OBSL1-MRPL2|1|fusion;ENST00000491898.5_1_6:43023605-43023818:-|nuORF;MRPL2|p.M292*|1|0.49|ENSG00000112651|chr6:43054319-43054319|G/-|frameshift_variant;ENSG00000112651|ENST00000388752|MRPL2 OBSL1-MRPL2|1|fusion OBSL1-MRPL2|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7833251953125 2 547.249077 1092.4836 0.65145 0.00035651 -0.38406 -0.00021018 0.26739 0.00014633 547.2488874050895 21.37 1.2042 19.896 19.456 20.66 -1.4742 99 33 4 0 0 0 6.1421E-24 1 3578 3578 173.69 81.033 1 39197000 13538 12722 8727 8730 13686 13686 -0.058941003268500936 ESEPGRGAQY 10 Unmodified _ESEPGRGAQY_ 0 0 0 OBSL1-MRPL2|1|fusion;ENST00000491898.5_1_6:43023605-43023818:-|nuORF;MRPL2|p.M292*|1|0.49|ENSG00000112651|chr6:43054319-43054319|G/-|frameshift_variant;ENSG00000112651|ENST00000388752|MRPL2 OBSL1-MRPL2|1|fusion OBSL1-MRPL2|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7727661132812 2 547.249077 1092.4836 -0.16723 -9.1517E-05 0.46831 0.00025628 0.30108 0.00016476 547.249343588006 21.238 1.2898 19.853 19.341 20.631 -1.3847 128 36 5 0 0 0 1.7E-11 1 3285 3285 160.69 85.761 1 43245000 13539 12722 8727 8730 13687 13687 -0.058941003268500936 ESEPPSRPPP 10 Unmodified _ESEPPSRPPP_ 0 0 0 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7736206054688 2 546.769645 1091.52474 0.53189 0.00029082 -0.84272 -0.00046077 -0.31083 -0.00016995 546.7691914403481 20.663 0.63707 19.266 19.072 19.709 -1.3966 64 17 5 0 0 0 0.48672 1 3547 3547 25.399 1.3787 1 151840000 + 13540 17616 8728 8731 13688 13688 -0.017363392873676275 ESEPQEMDI 9 Unmodified _ESEPQEMDI_ 0 0 0 CHD2|p.D1266Mfs*19|1|0.06|ENSG00000173575|chr15:92997311-92997312|-/AC|frameshift_variant;nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2 CHD2|p.D1266Mfs*19|1|0.06|ENSG00000173575|chr15:92997311-92997312|-/AC|frameshift_variant CHD2|p.D1266Mfs*19|1|0.06|ENSG00000173575|chr15:92997311-92997312|-/AC|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2130126953125 3 359.818345 1076.43321 0.036533 1.3145E-05 0.56382 0.00020287 0.60036 0.00021602 359.8185422194334 106.46 0.41264 102.37 102.09 102.5 -4.0913 13 11 2 0 0 0 0.85359 1 20418 20418 4.5289 2.0304 1 1060400 13541 512 8729 8732 13689 13689 -0.10195390766875789 ESEPRSWSL 9 Unmodified _ESEPRSWSL_ 0 0 0 nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 545.2185668945312 2 545.76182 1089.50909 1.0117 0.00055214 -0.57103 -0.00031164 0.44067 0.0002405 545.7614984867654 28.246 0.48595 26.29 26.016 26.502 -1.9561 42 13 4 0 0 0 0.8319 1 5006 5006 4.3292 0 1 5164500 13542 12301 8730 8733 13690 13690 -0.03208625804427356 ESEPRSWSL 9 Unmodified _ESEPRSWSL_ 0 0 0 nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 545.76182 1089.50909 0.39406 0.00021506 -0.028168 -1.5373E-05 0.36589 0.00019969 545.7618384480224 26.401 0.58115 26.401 26.156 26.737 0 0.088386 -1.2255E-05 NaN 4.3292 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4103900 13543 12301 8730 8733 -0.03208625804427356 ESEPRSWSL 9 Unmodified _ESEPRSWSL_ 0 0 0 nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 545.76182 1089.50909 0.27394 0.00014951 0.39166 0.00021375 0.6656 0.00036326 545.7619771536578 28.063 0.52906 26.308 26.036 26.565 -1.7552 -0.004332 0.000446 NaN 4.3292 39 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5817600 13544 12301 8730 8733 -0.03208625804427356 ESEPRSWSL 9 Unmodified _ESEPRSWSL_ 0 0 0 nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 545.76182 1089.50909 0.3763 0.00020537 0.2351 0.00012831 0.6114 0.00033368 545.761946490604 28.247 0.55713 26.251 25.961 26.519 -1.9962 -0.061826 0.00027511 NaN 4.3292 40 15 3 NaN NaN NaN NaN 0 NaN NaN 0 5110200 13545 12301 8730 8733 -0.03208625804427356 ESERLLRELY 10 Unmodified _ESERLLRELY_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2173156738281 3 436.569981 1306.68811 0.55782 0.00024353 -0.56068 -0.00024478 -0.0028657 -1.2511E-06 436.56977131717815 100.91 1.3371 100.91 100.48 101.82 0 142 37 6 0 0 0 0.14025 1 19858 19858 49.742 26.967 1 219720000 13546 26528 8731 8734 13691 13691 0.047038387636803236 ESERSPLY 8 Unmodified _ESERSPLY_ 0 0 0 nc|ENSG00000133059|Q6XUX3-3|DSTYK;DSTYK|p.L848Afs*3|1|0.28|ENSG00000133059|chr1:205148266-205148267|-/T|frameshift_variant;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK nc|ENSG00000133059|Q6XUX3-3|DSTYK nc|ENSG00000133059|Q6XUX3-3|DSTYK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25799560546875 2 490.737814 979.461075 NaN NaN NaN NaN NaN NaN NaN 51.728 1 51.728 51.228 52.228 0 0 0 0 0.20294 1 9820 9820 23.148 3.7094 1 13547 896 8732 8735 13692 13692 -0.029476997244614722 ESERYMAA 8 Unmodified _ESERYMAA_ 0 0 0 REV__nc|ENSG00000133816|O94851-2|MICAL2 REV__nc|ENSG00000133816|O94851-2|MICAL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7217102050781 2 478.710742 955.406931 NaN NaN NaN NaN NaN NaN NaN 123 1 123 122.5 123.5 0 0 0 0 0.21486 1 24241 24241 11.64 1.5664 1 + 13548 22756 8733 8736 13693 13693 -0.0725561514769879 ESESAYYPDPS 11 Unmodified _ESESAYYPDPS_ 0 0 0 REV__nc|ENSG00000173210|O94929-2|ABLIM3 REV__nc|ENSG00000173210|O94929-2|ABLIM3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7550048828125 2 622.751315 1243.48808 NaN NaN NaN NaN NaN NaN NaN 134.6 1 129.72 129.22 130.22 -4.8726 0 0 0 0.23379 1 25855 25855 5.2969 0.54088 1 + 13549 18337 8734 8737 13694 13694 -0.1239268069462014 ESETESETEY 10 Unmodified _ESETESETEY_ 0 0 0 REV__nc|ENSG00000087460|O95467|GNAS REV__nc|ENSG00000087460|O95467|GNAS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.29345703125 2 602.230413 1202.44627 0.62615 0.00037709 -0.62482 -0.00037629 0.0013302 8.0111E-07 602.2303956992924 102.71 0.46216 98.686 98.42 98.882 -4.0212 18 12 2 0 0 0 0.87854 1 19775 19775 9.3831 1.473 1 726830 + 13550 23960 8735 8738 13695 13695 -0.14685281173797193 ESETSREDE 9 Unmodified _ESETSREDE_ 0 0 0 nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-5|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.4818420410156 3 361.147519 1080.42073 -0.7519 -0.00027155 -0.43659 -0.00015767 -1.1885 -0.00042922 361.1473271005824 83.642 0.56041 79.943 79.587 80.147 -3.6985 18 15 2 0 0 0 0.5428 1 15955 15955 4.897 0 1 1271700 13551 1292 8736 8739 13696 13696 -0.11626710905557047 ESETSREDEY 10 Unmodified _ESETSREDEY_ 0 0 0 nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-5|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7632446289062 2 622.749304 1243.48405 -0.71635 -0.00044611 0.51054 0.00031794 -0.2058 -0.00012816 623.2510392468586 20.131 0.17409 18.496 18.361 18.535 -1.6351 6 4 2 0 0 0 0.66827 1 3064 3064 14.405 5.66 1 285160 13552 1292 8737 8740 13697 13697 -0.12794770188315852 ESEVECCAS 9 Unmodified _ESEVECCAS_ 0 0 0 REV__ENSG00000083857|ENST00000441802|FAT1 REV__ENSG00000083857|ENST00000441802|FAT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72320556640625 2 478.670425 955.326297 NaN NaN NaN NaN NaN NaN NaN 32.524 1 32.524 32.024 33.024 0 0 0 0 0.23508 1 5911 5911 7.2892 2.0586 1 + 13553 14460 8738 8741 13698 13698 -0.15315264252899397 ESEYTPPP 8 Unmodified _ESEYTPPP_ 0 0 0 REV__nc|ENSG00000141867|O60885-3|BRD4;REV__ENSG00000141867|ENST00000679869|BRD4 REV__ENSG00000141867|ENST00000679869|BRD4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22967529296875 2 460.205815 918.397078 NaN NaN NaN NaN NaN NaN NaN 29.498 1 27.605 27.105 28.105 -1.8928 0 0 0 0.21181 1 5020 5020 15.768 5.5848 1 + 13554 24075;16653 8739 8742 13699 13699 -0.06538479881430703 ESFCLIMDK 9 Unmodified _ESFCLIMDK_ 0 0 0 REV__ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant REV__ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7744140625 2 543.253928 1084.4933 0.15722 8.5413E-05 -0.88737 -0.00048207 -0.73014 -0.00039665 543.2535902408341 87.317 0.5995 83.59 83.149 83.749 -3.727 22 16 2 0 0 0 0.55979 1 17051 17051 15.847 2.3393 1 1498500 + 13555 17523 8740 8743 13700 13700 -0.045563716373180796 ESFCPEVPP 9 Unmodified _ESFCPEVPP_ 0 0 0 nc|ENSG00000187510|Q6ZR37-3|PLEKHG7;nc|ENSG00000187510|Q6ZR37-2|PLEKHG7;ENSG00000187510|ENST00000344636|PLEKHG7 nc|ENSG00000187510|Q6ZR37-3|PLEKHG7 nc|ENSG00000187510|Q6ZR37-3|PLEKHG7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.0599670410156 3 335.484638 1003.43208 -0.21491 -7.21E-05 -1.4043 -0.00047112 -1.6192 -0.00054322 335.48408695597044 29.471 0.31319 27.397 27.205 27.518 -2.0743 13 8 2 0 0 0 0.8825 1 5023 5023 0.23584 0 1 279010 13556 7108 8741 8744 13701 13701 -0.06949560345117334 ESFDEEFRTLY 11 Unmodified _ESFDEEFRTLY_ 0 0 0 ENSG00000168143|ENST00000306858|FAM83B;FAM83B|p.T487Nfs*8|1|0.31|ENSG00000168143|chr6:54940429-54940430|-/A|frameshift_variant;FAM83B|p.K601Sfs*22|1|0.05|ENSG00000168143|chr6:54940768-54940768|C/-|frameshift_variant;FAM83B|p.K593Nfs*30|1|0.36|ENSG00000168143|chr6:54940748-54940748|A/-|frameshift_variant;FAM83B|p.S772Lfs*4|1|0.26|ENSG00000168143|chr6:54941281-54941281|G/-|frameshift_variant ENSG00000168143|ENST00000306858|FAM83B ENSG00000168143|ENST00000306858|FAM83B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73681640625 3 479.217385 1434.63033 NaN NaN NaN NaN NaN NaN NaN 90.92 1 87.06 86.56 87.56 -3.8595 0 0 0 0.22632 1 17792 17792 0.03141 0 1 13557 5885 8742 8745 13702 13702 -0.06960467952421823 ESFEMWDDR 9 Unmodified _ESFEMWDDR_ 0 0 0 nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1 nc|ENSG00000007952|Q9Y5S8-3|NOX1 nc|ENSG00000007952|Q9Y5S8-3|NOX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.29998779296875 3 405.497606 1213.47099 -0.29401 -0.00011922 -1.3049 -0.00052915 -1.599 -0.00064837 405.4977467619239 38.448 0.52465 36.043 35.844 36.369 -2.4049 31 14 3 0 0 0 0.8799 1 6903 6903 2.4985 0 1 1316500 13558 1032 8743 8746 13703 13703 -0.12720879781409167 ESFEMWDDR 9 Unmodified _ESFEMWDDR_ 0 0 0 nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1 nc|ENSG00000007952|Q9Y5S8-3|NOX1 nc|ENSG00000007952|Q9Y5S8-3|NOX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 405.497606 1213.47099 0.03366 1.3649E-05 -2.1234 -0.00086105 -2.0898 -0.0008474 405.4978017691017 38.475 0.63429 36.033 35.845 36.479 -2.4419 -0.0047237 -0.00039289 NaN 2.4985 51 17 4 NaN NaN NaN NaN 0 NaN NaN 0 2065900 13559 1032 8743 8746 -0.12720879781409167 ESFGEVDF 8 Unmodified _ESFGEVDF_ 0 0 0 ENSG00000107165|ENST00000388918|TYRP1 ENSG00000107165|ENST00000388918|TYRP1 ENSG00000107165|ENST00000388918|TYRP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2496643066406 2 465.19799 928.381428 NaN NaN NaN NaN NaN NaN NaN 102.98 1 98.797 98.297 99.297 -4.1861 0 0 0 0.10916 1 20245 20245 0.68139 0 1 13560 2415 8744 8747 13704 13704 -0.08562766398472377 ESFHLEPC 8 Unmodified _ESFHLEPC_ 0 0 0 REV__ENST00000525068.1_1_20:57288807-57289834:+|nuORF REV__ENST00000525068.1_1_20:57288807-57289834:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2547912597656 2 481.207835 960.401117 NaN NaN NaN NaN NaN NaN NaN 121.8 1 117.27 116.77 117.77 -4.5305 0 0 0 0.21486 1 23449 23449 9.3474 0 1 + 13561 19689 8745 8748 13705 13705 -0.08066713659366087 ESFIFFAT 8 Unmodified _ESFIFFAT_ 0 0 0 REV__SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant REV__SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2366027832031 2 481.236919 960.459284 0.41311 0.00019881 -1.3333 -0.00064165 -0.92022 -0.00044284 481.23655509008177 89.716 1.1645 85.671 84.964 86.128 -4.0443 59 32 3 0 0 0 0.64227 1 17002 17002 19.439 3.5918 1 971570 + 13562 17520 8746 8749 13706 13706 -0.022527087424236925 ESFKIKTAY 9 Unmodified _ESFKIKTAY_ 0 0 0 nc|ENSG00000002079|Q9H6N6|MYH16 nc|ENSG00000002079|Q9H6N6|MYH16 nc|ENSG00000002079|Q9H6N6|MYH16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.796630859375 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 112.54 1 108.09 107.59 108.59 -4.4539 0 0 0 0.23508 1 22182 22182 11.64 0 1 13563 12202 8747 8750 13707 13707 0.03634609757477847 ESFKNEKY 8 Unmodified _ESFKNEKY_ 0 0 0 ZNF804B|p.P1231Tfs*23|1|0.28|ENSG00000182348|chr7:89336665-89336666|-/TCACC|frameshift_variant;ENSG00000182348|ENST00000333190|ZNF804B ZNF804B|p.P1231Tfs*23|1|0.28|ENSG00000182348|chr7:89336665-89336666|-/TCACC|frameshift_variant ZNF804B|p.P1231Tfs*23|1|0.28|ENSG00000182348|chr7:89336665-89336666|-/TCACC|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.1338500976562 2 522.753464 1043.49238 0.559 0.00029222 -0.79754 -0.00041692 -0.23854 -0.0001247 522.7529827960724 28.516 0.92615 26.56 26.089 27.015 -1.9561 69 26 3 0 0 0 1.0147 1 5013 5013 0.6015 0 1 18489000 13564 6786 8748 8751 13708 13708 -0.027631266903881624 ESFLSKDP 8 Unmodified _ESFLSKDP_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant;CCDC168|p.A4132Qfs*29|1|0.23|ENSG00000175820|chr13:102738304-102738304|T/-|frameshift_variant;CCDC168|p.A3265Vfs*21|1|0.06|ENSG00000175820|chr13:102740903-102740904|-/GAAGAAAAATATA|frameshift_variant;CCDC168|p.L3176Ifs*8|1|0.42|ENSG00000175820|chr13:102741171-102741172|-/T|frameshift_variant ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.524169921875 2 461.729458 921.444362 -0.11445 -5.2845E-05 0.70347 0.00032481 0.58902 0.00027197 461.72955596250426 60.734 0.87777 60.734 60.347 61.224 0 52 24 3 0 0 0 0.9383 1 11692 11692 19.257 2.3147 1 3772800 13565 414 8749 8752 13709 13709 -0.01950200610428965 ESFLSKDP 8 Unmodified _ESFLSKDP_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant;CCDC168|p.A4132Qfs*29|1|0.23|ENSG00000175820|chr13:102738304-102738304|T/-|frameshift_variant;CCDC168|p.A3265Vfs*21|1|0.06|ENSG00000175820|chr13:102740903-102740904|-/GAAGAAAAATATA|frameshift_variant;CCDC168|p.L3176Ifs*8|1|0.42|ENSG00000175820|chr13:102741171-102741172|-/T|frameshift_variant ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.729458 921.444362 -0.035092 -1.6203E-05 0.32493 0.00015003 0.28983 0.00013382 461.7295051939549 63.939 0.83794 60.942 60.522 61.36 -2.9975 0.091137 1.0681E-05 NaN 19.257 53 23 3 NaN NaN NaN NaN 0 NaN NaN 0 6654100 13566 414 8749 8752 -0.01950200610428965 ESFLSKDP 8 Unmodified _ESFLSKDP_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant;CCDC168|p.A4132Qfs*29|1|0.23|ENSG00000175820|chr13:102738304-102738304|T/-|frameshift_variant;CCDC168|p.A3265Vfs*21|1|0.06|ENSG00000175820|chr13:102740903-102740904|-/GAAGAAAAATATA|frameshift_variant;CCDC168|p.L3176Ifs*8|1|0.42|ENSG00000175820|chr13:102741171-102741172|-/T|frameshift_variant ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.729458 921.444362 0.15364 7.0939E-05 0.18307 8.4528E-05 0.33671 0.00015547 461.72940448640577 64.348 0.8106 60.89 60.487 61.297 -3.4581 0.03946 -0.00012032 NaN 19.257 53 22 3 NaN NaN NaN NaN 0 NaN NaN 0 6657100 13567 414 8749 8752 -0.01950200610428965 ESFLSKDP 8 Unmodified _ESFLSKDP_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant;CCDC168|p.A4132Qfs*29|1|0.23|ENSG00000175820|chr13:102738304-102738304|T/-|frameshift_variant;CCDC168|p.A3265Vfs*21|1|0.06|ENSG00000175820|chr13:102740903-102740904|-/GAAGAAAAATATA|frameshift_variant;CCDC168|p.L3176Ifs*8|1|0.42|ENSG00000175820|chr13:102741171-102741172|-/T|frameshift_variant ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.729458 921.444362 0.2767 0.00012776 0.091474 4.2236E-05 0.36817 0.00017 461.72937066023184 64.093 0.83973 60.836 60.432 61.272 -3.2567 -0.014359 -0.0002049 NaN 19.257 49 23 3 NaN NaN NaN NaN 0 NaN NaN 0 5426200 13568 414 8749 8752 -0.01950200610428965 ESFNHLFSPT 10 Unmodified _ESFNHLFSPT_ 0 0 0 ENST00000230565.3_1_6:46135895-46138552:-|nuORF ENST00000230565.3_1_6:46135895-46138552:-|nuORF ENST00000230565.3_1_6:46135895-46138552:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2697143554688 2 589.77747 1177.54039 0.41926 0.00024727 0.67946 0.00040073 1.0987 0.000648 589.7779651258786 66.815 0.76772 63.706 63.166 63.934 -3.1086 29 21 3 0 0 0 0.88533 1 12900 12900 5.2969 0 1 2096600 13569 8157 8750 8753 13710 13710 -0.04128052770306567 ESFNMSVSAI 10 Unmodified _ESFNMSVSAI_ 0 0 0 tr|U7T8F3|U7T8F3_FUSNUMacrolidetransportsystemATP-binding/permeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00035PE=3SV=1 tr|U7T8F3|U7T8F3_FUSNUMacrolidetransportsystemATP-binding/permeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00035PE=3SV=1 tr|U7T8F3|U7T8F3_FUSNUMacrolidetransportsystemATP-binding/permeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00035PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7817993164062 2 542.752607 1083.49066 0.2845 0.00015441 -0.17505 -9.5011E-05 0.10944 5.9399E-05 542.7527111846699 61.67 1.5263 58.43 57.997 59.523 -3.2395 165 43 6 0 0 0 0.6817 1 11696 11696 13.042 0.80181 1 352370000 13570 26505 8751 8754 13711 13711 -0.04774503770636329 ESFQCDHY 8 Unmodified _ESFQCDHY_ 0 0 0 REV__ENSG00000069956|ENST00000261845|MAPK6 REV__ENSG00000069956|ENST00000261845|MAPK6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.80682373046875 3 343.464125 1027.37055 0.062817 2.1575E-05 0.14625 5.0231E-05 0.20907 7.1807E-05 343.7982565051074 54.322 2.2021 51.186 50.835 53.037 -3.1352 147 62 4 0 0 0 8448 1 10102 10102 6.1918 2.6048 1 22243000 + 13571 14246 8752 8755 13712 13712 -0.14204492044405015 ESFQEQPN 8 Unmodified _ESFQEQPN_ 0 0 0 REV__nc|ENSG00000177354|Q711Q0-3|CEFIP REV__nc|ENSG00000177354|Q711Q0-3|CEFIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2589416503906 2 489.711796 977.40904 0.88648 0.00043412 -0.11936 -5.8451E-05 0.76712 0.00037567 489.7117085158844 28.498 0.30829 26.542 26.364 26.672 -1.9561 14 8 2 0 0 0 0.97173 1 5079 5079 12.532 0.89125 1 612120 + 13572 18553 8753 8756 13713 13713 -0.08056863138233439 ESFQTHLKLHL 11 Unmodified _ESFQTHLKLHL_ 0 0 0 nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423 nc|ENSG00000102935|Q2M1K9-2|ZNF423 nc|ENSG00000102935|Q2M1K9-2|ZNF423 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 451.582763671875 3 451.582221 1351.72483 NaN NaN NaN NaN NaN NaN NaN 125.35 1 120.58 120.08 121.08 -4.7681 0 0 0 0.22632 1 24061 24061 0.172 0 1 13573 2155 8754 8757 13714 13714 0.0630413538024186 ESFRRGAP 8 Unmodified _ESFRRGAP_ 0 0 0 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2295227050781 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 38.014 1 35.545 35.045 36.045 -2.4688 0 0 0 0.21486 1 7034 7034 10.183 0.83596 1 13574 4030 8755 8758 13715 13715 0.0046686329772001045 ESFRRGAP 8 Unmodified _ESFRRGAP_ 0 0 0 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2399597167969 2 460.240858 918.467164 0.032335 1.4882E-05 -1.7638 -0.00081176 -1.7314 -0.00079688 460.2398847957939 37.639 0.47937 35.291 35.099 35.578 -2.3479 19 13 2 0 0 0 0.72861 1 6725 6725 10.183 1.5901 1 657540 13575 4030 8755 8758 13716 13716 0.0046686329772001045 ESFSNYFK 8 Unmodified _ESFSNYFK_ 0 0 0 REV__ENST00000297857.3_1_8:124261623-124261725:-|nuORF REV__ENST00000297857.3_1_8:124261623-124261725:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.1954040527344 3 341.15903 1020.45526 NaN NaN NaN NaN NaN NaN NaN 64.382 1 64.382 63.882 64.882 0 0 0 0 0.21486 1 12394 12394 6.2058 2.0163 1 + 13576 20382 8756 8759 13717 13717 -0.05414798236131446 ESFTVQPRD 9 Unmodified _ESFTVQPRD_ 0 0 0 REV__ENST00000569746.1_1_16:31340324-31341298:+|nuORF REV__ENST00000569746.1_1_16:31340324-31341298:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2620849609375 2 539.76182 1077.50909 0.46624 0.00025166 1.3629 0.00073562 1.8291 0.00098728 539.7627531628249 29.688 1.0524 27.796 27.226 28.279 -1.8928 103 29 5 0 0 0 0.6427 1 5019 5019 10.074 0 1 15073000 + 13577 18126 8757 8760 13718 13718 -0.026566258044113056 ESGAGRPAGK 10 Unmodified _ESGAGRPAGK_ 0 0 0 REV__ENST00000424766.5_2_2:190649358-190656524:+|nuORF REV__ENST00000424766.5_2_2:190649358-190656524:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24859619140625 2 465.243598 928.472643 NaN NaN NaN NaN NaN NaN NaN 117.66 1 117.66 117.16 118.16 0 0 0 0 2.8426 1 23175 23175 0.26539 0.013911 1 + 13578 21548 8758 8761 13719 13719 0.0055454208951459805 ESGAVIRGNY 10 Unmodified _ESGAVIRGNY_ 0 0 0 ENST00000340911.8_1_9:97062029-97063649:+|nuORF;ENSG00000175787|ENST00000395395|ZNF169 ENST00000340911.8_1_9:97062029-97063649:+|nuORF ENST00000340911.8_1_9:97062029-97063649:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.270263671875 2 533.269813 1064.52507 0.018527 9.8801E-06 0.42859 0.00022855 0.44712 0.00023843 533.2701240843016 16.561 0.79352 16.561 16.058 16.851 0 48 22 4 0 0 0 0.744 1 2624 2624 6.7232 6.7232 1 12631000 13579 6433 8759 8762 13720 13720 -0.004609195675357114 ESGCHGGRY 9 Unmodified _ESGCHGGRY_ 0 0 0 REV__ENST00000465335.1_1_1:6260785-6269413:-|nuORF REV__ENST00000465335.1_1_1:6260785-6269413:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 483.7559509277344 2 483.198333 964.382113 0.38686 0.00018693 0.82933 0.00040073 1.2162 0.00058766 483.19864115662625 30.433 1.0216 28.54 28.101 29.122 -1.8928 41 28 2 0 0 0 0.6215 1 5334 5334 0.12781 0.12781 1 959580 + 13580 21947 8760 8763 13721 13721 -0.10150250230390157 ESGCHGGRY 9 Unmodified _ESGCHGGRY_ 0 0 0 REV__ENST00000465335.1_1_1:6260785-6269413:-|nuORF REV__ENST00000465335.1_1_1:6260785-6269413:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 483.198333 964.382113 0.51022 0.00024654 0.44054 0.00021287 0.95076 0.00045941 483.1981353609843 30.642 0.91936 28.525 28.011 28.93 -2.1167 -0.0074951 -0.00023608 NaN 0.12781 46 25 4 NaN NaN NaN NaN 0 NaN NaN 0 744860 + 13581 21947 8760 8763 -0.10150250230390157 ESGDRGPDYV 10 Unmodified _ESGDRGPDYV_ 0 0 0 REV__ENSG00000123091|ENST00000242719|RNF11 REV__ENSG00000123091|ENST00000242719|RNF11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7823486328125 2 547.741085 1093.46762 0.19527 0.00010696 -0.36412 -0.00019944 -0.16885 -9.2485E-05 547.7407163649153 81.76 1.0342 78.203 77.689 78.723 -3.557 83 29 4 0 0 0 0.5575 1 15951 15951 21.537 9.0054 1 12859000 + 13582 15714 8761 8764 13722 13722 -0.07537806563755112 ESGFNGVL 8 Unmodified _ESGFNGVL_ 0 0 0 tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.11492919921875 2 411.703243 821.391933 -0.392 -0.00016139 0.5584 0.0002299 0.16641 6.851E-05 411.70339247241816 40.707 1.5853 38.072 37.262 38.847 -2.6348 74 44 2 0 0 0 1.0095 1 7742 7742 2.5775 2.5775 1 3025100 13583 26385 8762 8765 13723 13723 -0.025907389533699643 ESGGSDQVGR 10 Unmodified _ESGGSDQVGR_ 0 0 0 REV__ENST00000520150.5_1_5:179267832-179285817:-|nuORF REV__ENST00000520150.5_1_5:179267832-179285817:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 331.19464111328125 3 331.152827 990.436651 NaN NaN NaN NaN NaN NaN NaN 80.397 1 80.397 79.897 80.897 0 0 0 0 0.22588 1 15652 15652 1.5923 0.39894 1 + 13584 17446 8763 8766 13724 13724 -0.058949598779804546 ESGIAPWR 8 Unmodified _ESGIAPWR_ 0 0 0 REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23822021484375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 96.883 1 96.883 96.383 97.383 0 0 0 0 0.21452 1 18982 18982 13.508 0 1 + 13585 23649 8764 8767 13725 13725 0.00036345066178000707 ESGIAPWR 8 Unmodified _ESGIAPWR_ 0 0 0 REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.238525390625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 105.42 1 105.42 104.92 105.92 0 0 0 0 0.21486 1 20721 20721 8.5933 0 1 + 13586 23649 8764 8767 13726 13726 0.00036345066178000707 ESGIAPWR 8 Unmodified _ESGIAPWR_ 0 0 0 REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.238037109375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 111.24 1 111.24 110.74 111.74 0 0 0 0 0.21039 1 21879 21879 16.942 0 1 + 13587 23649 8764 8767 13727 13727 0.00036345066178000707 ESGIAPWR 8 Unmodified _ESGIAPWR_ 0 0 0 REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23748779296875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 118.37 1 118.37 117.87 118.87 0 0 0 0 0.21486 1 23313 23313 7.9102 0 1 + 13588 23649 8764 8767 13728 13728 0.00036345066178000707 ESGIAPWR 8 Unmodified _ESGIAPWR_ 0 0 0 REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23785400390625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 130.74 1 130.74 130.24 131.24 0 0 0 0 0.21486 1 25844 25844 12.532 3.9383 1 + 13589 23649 8764 8767 13729 13729 0.00036345066178000707 ESGIAPWR 8 Unmodified _ESGIAPWR_ 0 0 0 REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23876953125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 101.29 1 97.129 96.629 97.629 -4.1594 0 0 0 0.21452 1 19911 19911 13.508 0 1 + 13590 23649 8764 8767 13730 13730 0.00036345066178000707 ESGIAPWR 8 Unmodified _ESGIAPWR_ 0 0 0 REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2382507324219 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 132.27 1 127.42 126.92 127.92 -4.8527 0 0 0 0.21486 1 25407 25407 12.532 0 1 + 13591 23649 8764 8767 13731 13731 0.00036345066178000707 ESGIAPWR 8 Unmodified _ESGIAPWR_ 0 0 0 REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384033203125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 119.46 1 114.99 114.49 115.49 -4.467 0 0 0 0.20896 1 22997 22997 18.135 0 1 + 13592 23649 8764 8767 13732 13732 0.00036345066178000707 ESGIAPWR 8 Unmodified _ESGIAPWR_ 0 0 0 REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant REV__IGF2|p.P173Qfs*27|1|0.38|ENSG00000167244|chr11:2133012-2133012|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23907470703125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 133.31 1 128.5 128 129 -4.8175 0 0 0 0.21452 1 25660 25660 13.508 0 1 + 13593 23649 8764 8767 13733 13733 0.00036345066178000707 ESGIKLGIL 9 Unmodified _ESGIKLGIL_ 0 0 0 ENST00000465573.1_1_2:198365552-198367980:+|nuORF ENST00000465573.1_1_2:198365552-198367980:+|nuORF ENST00000465573.1_1_2:198365552-198367980:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24859619140625 2 465.286943 928.559333 -0.17243 -8.0228E-05 0.13966 6.498E-05 -0.032772 -1.5249E-05 465.2869637822048 103.49 0.64352 99.273 98.909 99.552 -4.2183 32 18 2 0 0 0 0.32967 1 20388 20388 1.6919 1.3123 1 2493000 13594 10123 8765 8768 13734 13734 0.09219528591370363 ESGKADEATA 10 Unmodified _ESGKADEATA_ 0 0 0 nc|ENSG00000140481|Q8N5R6-2|CCDC33;ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33 nc|ENSG00000140481|Q8N5R6-2|CCDC33 nc|ENSG00000140481|Q8N5R6-2|CCDC33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2671203613281 2 489.722361 977.430169 -0.30764 -0.00015066 1.167 0.00057152 0.85938 0.00042086 489.72278563718993 25.821 0.52302 23.899 23.671 24.194 -1.9222 25 14 2 0 0 0 0.51405 1 4267 4267 3.8763 0.59502 1 2345900 13595 12356 8766 8769 13735 13735 -0.05944897829397178 ESGKKHAAE 9 Unmodified _ESGKKHAAE_ 0 0 0 ENST00000305699.15_1_16:89806300-89831390:-|nuORF ENST00000305699.15_1_16:89806300-89831390:-|nuORF ENST00000305699.15_1_16:89806300-89831390:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74273681640625 2 478.743431 955.472308 1.0172 0.00048698 -1.0634 -0.00050909 -0.046183 -2.211E-05 478.74287510140675 24.51 0.79767 22.862 22.402 23.199 -1.6482 35 22 2 0 0 0 0.57447 1 4197 4197 14.838 0.93222 1 618660 13596 8605 8767 8770 13736 13736 -0.007208776303400555 ESGKLDLGP 9 Unmodified _ESGKLDLGP_ 0 0 0 REV__RFX5|p.R335Gfs*6|1|0.3|ENSG00000143390|chr1:151343034-151343034|G/-|frameshift_variant REV__RFX5|p.R335Gfs*6|1|0.3|ENSG00000143390|chr1:151343034-151343034|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2412109375 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 20.008 1 18.372 17.872 18.872 -1.6351 0 0 0 0.23508 1 3054 3054 7.9102 0.62092 1 + 13597 16724 8768 8771 13737 13737 0.010254882809022092 ESGLDEWECF 10 Unmodified _ESGLDEWECF_ 0 0 0 REV__ZNF473|p.H533Rfs*30|1|0.46|ENSG00000142528|chr19:50046040-50046041|CA/-|frameshift_variant REV__ZNF473|p.H533Rfs*30|1|0.46|ENSG00000142528|chr19:50046040-50046041|CA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.2998352050781 3 405.493861 1213.45975 -0.51561 -0.00020908 -0.45694 -0.00018529 -0.97255 -0.00039436 405.49355462577256 83.997 0.56802 80.285 80.026 80.594 -3.7117 51 15 6 0 0 0 0.91149 1 15998 15998 0.12286 0 1 3002800 + 13598 25578 8769 8772 13738 13738 -0.13843701875543957 ESGLDEWECF 10 Unmodified _ESGLDEWECF_ 0 0 0 REV__ZNF473|p.H533Rfs*30|1|0.46|ENSG00000142528|chr19:50046040-50046041|CA/-|frameshift_variant REV__ZNF473|p.H533Rfs*30|1|0.46|ENSG00000142528|chr19:50046040-50046041|CA/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 405.493861 1213.45975 -0.20913 -8.4799E-05 -0.73346 -0.00029741 -0.94259 -0.00038221 405.4933150931106 84.027 0.65012 80.419 80.081 80.731 -3.6079 0.10837 0.00011018 NaN 0.12286 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1297000 + 13599 25578 8769 8772 -0.13843701875543957 ESGLDEWECF 10 Unmodified _ESGLDEWECF_ 0 0 0 REV__ZNF473|p.H533Rfs*30|1|0.46|ENSG00000142528|chr19:50046040-50046041|CA/-|frameshift_variant REV__ZNF473|p.H533Rfs*30|1|0.46|ENSG00000142528|chr19:50046040-50046041|CA/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 405.493861 1213.45975 0.13991 5.6732E-05 -1.2094 -0.00049041 -1.0695 -0.00043368 405.82784208772387 84.138 0.52017 80.228 80.074 80.595 -3.9093 -0.082444 -0.00046881 NaN 0.12286 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1302600 + 13600 25578 8769 8772 -0.13843701875543957 ESGLLDLAP 9 Unmodified _ESGLLDLAP_ 0 0 0 REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23828125 2 457.745108 913.475663 -0.052815 -2.4176E-05 0.30912 0.0001415 0.2563 0.00011732 457.74516546598846 106.86 1.2403 102.44 101.65 102.89 -4.4121 76 35 4 0 0 0 0.23667 1 20533 20533 34.102 0 1 11968000 + 13601 17671 8770 8773 13739 13739 0.015463724236724374 ESGLQLDPG 9 Unmodified _ESGLQLDPG_ 0 0 0 ENSG00000177354|ENST00000374144|C10orf71 ENSG00000177354|ENST00000374144|C10orf71 ENSG00000177354|ENST00000374144|C10orf71 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22515869140625 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 75.615 1 75.615 75.115 76.115 0 0 0 0 0.20628 1 14690 14690 21.747 3.6003 1 13602 6507 8771 8774 13740 13740 -0.0261138861579866 ESGLQLDPG 9 Unmodified _ESGLQLDPG_ 0 0 0 ENSG00000177354|ENST00000374144|C10orf71 ENSG00000177354|ENST00000374144|C10orf71 ENSG00000177354|ENST00000374144|C10orf71 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2237243652344 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 79.674 1 75.869 75.369 76.369 -3.8048 0 0 0 0.1761 1 15118 15118 26.884 1.4843 1 13603 6507 8771 8774 13741 13741 -0.0261138861579866 ESGLSFLY 8 Unmodified _ESGLSFLY_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2420349121094 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 138.07 1 133.14 132.64 133.64 -4.9216 0 0 0 0.19492 1 26547 26547 26.341 0 1 + 13604 15935 8772 8775 13742 13742 -0.02209299122102948 ESGNEMKY 8 Unmodified _ESGNEMKY_ 0 0 0 REV__ENSG00000109991|ENST00000263314|P2RX3 REV__ENSG00000109991|ENST00000263314|P2RX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7322998046875 2 479.20275 956.390947 1.1326 0.00054274 -0.16851 -8.0748E-05 0.96409 0.000462 479.20216277365404 26.273 0.44295 24.491 24.213 24.655 -1.7821 24 12 3 0 0 0 0.69713 1 4610 4610 14.838 2.3067 1 973590 + 13605 15185 8773 8776 13743 13743 -0.0889932138459244 ESGNEMKY 8 Unmodified _ESGNEMKY_ 0 0 0 REV__ENSG00000109991|ENST00000263314|P2RX3 REV__ENSG00000109991|ENST00000263314|P2RX3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.20275 956.390947 1.1326 0.00054274 -0.16851 -8.0748E-05 0.96409 0.000462 479.20216277365404 26.273 0.44295 24.491 24.213 24.655 -1.7821 0.021204 -8.5762E-06 NaN 14.838 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 973590 + 13606 15185 8773 8776 -0.0889932138459244 ESGNRSARPL 10 Unmodified _ESGNRSARPL_ 0 0 0 CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7962646484375 2 543.786161 1085.55777 NaN NaN NaN NaN NaN NaN NaN 86.19 1 82.461 81.961 82.961 -3.7289 0 0 0 0.21796 1 16479 16479 24.991 5.629 1 13607 403 8774 8777 13744 13744 0.018412875553167396 ESGPASLYS 9 Unmodified _ESGPASLYS_ 0 0 0 REV__nc|ENSG00000104067|Q07157-2|TJP1 REV__nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 910.416259765625 1 910.415253 909.407977 0.20751 0.00018892 0.27985 0.00025478 0.48736 0.0004437 910.4155053284849 63.234 0.80328 63.234 62.839 63.642 0 38 22 2 0 0 0 0.13708 1 12192 12192 46.021 15.384 1 2953000 + 13608 14903 8775 8778 13745 13745 -0.05035077507125152 ESGPASLYS 9 Unmodified _ESGPASLYS_ 0 0 0 REV__nc|ENSG00000104067|Q07157-2|TJP1 REV__nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 910.4151611328125 1 910.415253 909.407977 0.51388 0.00046784 -0.31705 -0.00028864 0.19683 0.0001792 910.41511463776 66.971 0.95216 63.475 62.903 63.856 -3.4965 47 26 2 0 0 0 0.049627 1 12587 12587 71.134 3.0529 1 4022900 + 13609 14903 8775 8778 13746 13746 -0.05035077507125152 ESGPASLYS 9 Unmodified _ESGPASLYS_ 0 0 0 REV__nc|ENSG00000104067|Q07157-2|TJP1 REV__nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.416259765625 1 910.415253 909.407977 0.4607 0.00041942 -0.088291 -8.0382E-05 0.3724 0.00033904 910.4153614717645 66.628 0.98192 63.301 62.884 63.866 -3.3268 50 27 2 0 0 0 0.071377 1 12568 12568 64.236 2.8788 1 4009100 + 13610 14903 8775 8778 13747 13747 -0.05035077507125152 ESGPAWAAAP 10 Unmodified _ESGPAWAAAP_ 0 0 0 ENST00000380916.8_1_9:14680113-14693400:-|nuORF ENST00000380916.8_1_9:14680113-14693400:-|nuORF ENST00000380916.8_1_9:14680113-14693400:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.724609375 2 478.727249 955.439946 -0.023616 -1.1305E-05 -0.92363 -0.00044216 -0.94724 -0.00045347 478.72695698739716 46.592 0.62304 43.751 43.486 44.109 -2.8409 29 17 3 0 0 0 0.70357 1 8763 8763 10.824 2.2306 1 1037800 13611 9323 8776 8779 13748 13748 -0.039556650333452126 ESGPFASGLP 10 Unmodified _ESGPFASGLP_ 0 0 0 REV__nc|ENSG00000095637|Q9BX66-2|SORBS1 REV__nc|ENSG00000095637|Q9BX66-2|SORBS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2318115234375 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 35.598 1 35.598 35.098 36.098 0 0 0 0 0.22323 1 6539 6539 24.021 2.4836 1 + 13612 14614 8777 8780 13749 13749 -0.02654798236142142 ESGPFASGLP 10 Unmodified _ESGPFASGLP_ 0 0 0 REV__nc|ENSG00000095637|Q9BX66-2|SORBS1 REV__nc|ENSG00000095637|Q9BX66-2|SORBS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.233154296875 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 35.814 1 35.814 35.314 36.314 0 0 0 0 0.13485 1 6586 6586 54.774 14.816 1 + 13613 14614 8777 8780 13750 13750 -0.02654798236142142 ESGPFASGLP 10 Unmodified _ESGPFASGLP_ 0 0 0 REV__nc|ENSG00000095637|Q9BX66-2|SORBS1 REV__nc|ENSG00000095637|Q9BX66-2|SORBS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23284912109375 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 36.053 1 36.053 35.553 36.553 0 0 0 0 0.14213 1 6637 6637 37.974 5.6685 1 + 13614 14614 8777 8780 13751 13751 -0.02654798236142142 ESGPFASGLP 10 Unmodified _ESGPFASGLP_ 0 0 0 REV__nc|ENSG00000095637|Q9BX66-2|SORBS1 REV__nc|ENSG00000095637|Q9BX66-2|SORBS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.232666015625 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 38.09 1 35.622 35.122 36.122 -2.4688 0 0 0 0.22323 1 7049 7049 24.021 3.5669 1 + 13615 14614 8777 8780 13752 13752 -0.02654798236142142 ESGPFASGLP 10 Unmodified _ESGPFASGLP_ 0 0 0 REV__nc|ENSG00000095637|Q9BX66-2|SORBS1 REV__nc|ENSG00000095637|Q9BX66-2|SORBS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25274658203125 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 38.153 1 35.684 35.184 36.184 -2.4688 0 0 0 0.17827 1 7063 7063 32.305 1.6689 1 + 13616 14614 8777 8780 13753 13753 -0.02654798236142142 ESGPFASGLP 10 Unmodified _ESGPFASGLP_ 0 0 0 REV__nc|ENSG00000095637|Q9BX66-2|SORBS1 REV__nc|ENSG00000095637|Q9BX66-2|SORBS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2327880859375 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 38.523 1 35.974 35.474 36.474 -2.5491 0 0 0 0.18733 1 7143 7143 30.637 5.2372 1 + 13617 14614 8777 8780 13754 13754 -0.02654798236142142 ESGPRPKC 8 Unmodified _ESGPRPKC_ 0 0 0 ENST00000302243.11_1_16:70400583-70400640:+|nuORF ENST00000302243.11_1_16:70400583-70400640:+|nuORF ENST00000302243.11_1_16:70400583-70400640:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2279052734375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 115.93 1 111.44 110.94 111.94 -4.486 0 0 0 0.22934 1 22855 22855 0.30703 0.17922 1 13618 8570 8778 8781 13755 13755 -0.023875877026057424 ESGRHKEN 8 Unmodified _ESGRHKEN_ 0 0 0 TLR6|p.E667Kfs*65|1|0.4|ENSG00000174130|chr4:38827476-38827476|T/-|frameshift_variant;ENSG00000174130|ENST00000508254|TLR6 TLR6|p.E667Kfs*65|1|0.4|ENSG00000174130|chr4:38827476-38827476|T/-|frameshift_variant TLR6|p.E667Kfs*65|1|0.4|ENSG00000174130|chr4:38827476-38827476|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7320251464844 2 478.730855 955.447156 NaN NaN NaN NaN NaN NaN NaN 56.198 1 53.009 52.509 53.509 -3.1895 0 0 0 0.22628 1 10410 10410 2.643 0.95116 1 13619 6331 8779 8782 13756 13756 -0.032349324329061346 ESGSTPPGILH 11 Unmodified _ESGSTPPGILH_ 0 0 0 REV__ENST00000338779.10_1_16:70695390-70695915:-|nuORF REV__ENST00000338779.10_1_16:70695390-70695915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7845458984375 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 140.03 1 140.03 139.53 140.53 0 0 0 0 0.19804 1 27859 27859 19.257 3.4098 1 + 13620 20684 8780 8783 13757 13757 -0.0026405277033063612 ESGSTPPGILH 11 Unmodified _ESGSTPPGILH_ 0 0 0 REV__ENST00000338779.10_1_16:70695390-70695915:-|nuORF REV__ENST00000338779.10_1_16:70695390-70695915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7905883789062 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 140.11 1 140.11 139.61 140.61 0 0 0 0 0.19804 1 27880 27880 19.257 7.6167 1 + 13621 20684 8780 8783 13758 13758 -0.0026405277033063612 ESGVEDACVAT 11 Unmodified _ESGVEDACVAT_ 0 0 0 REV__nc|ENSG00000136002|Q9NR80-4|ARHGEF4;REV__ENSG00000136002|ENST00000409359|ARHGEF4 REV__nc|ENSG00000136002|Q9NR80-4|ARHGEF4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2817993164062 2 540.729329 1079.4441 0.48451 0.00026199 -2.1083 -0.00114 -1.6237 -0.000878 540.7280822548147 20.378 0.24797 18.981 18.863 19.111 -1.3966 9 6 2 0 0 0 0.92792 1 3399 3399 5.2969 0 1 228930 + 13622 24050;16306 8781 8784 13759 13759 -0.09243988392609026 ESGWFIYY 8 Unmodified _ESGWFIYY_ 0 0 0 REV__ENST00000375571.5_1_20:31437296-31437338:+|nuORF REV__ENST00000375571.5_1_20:31437296-31437338:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2789306640625 2 532.739825 1063.4651 0.38761 0.00020649 -1.2222 -0.00065114 -0.83464 -0.00044464 532.7373752943572 24.316 0.55648 22.781 22.47 23.027 -1.5342 32 15 4 0 0 0 0.97994 1 3916 3916 5.7604 0.52976 1 1025100 + 13623 21066 8782 8785 13760 13760 -0.06409610230775797 ESGYALKPP 9 Unmodified _ESGYALKPP_ 0 0 0 REV__ENST00000441699.1_1_7:55779182-55780918:-|nuORF REV__ENST00000441699.1_1_7:55779182-55780918:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2549743652344 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 59.563 1 56.249 55.749 56.749 -3.3139 0 0 0 0.23508 1 11077 11077 12.532 0 1 + 13624 21716 8783 8786 13761 13761 0.009820786605587273 ESHETPET 8 Unmodified _ESHETPET_ 0 0 0 nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8 nc|ENSG00000189195|Q5XKL5-4|BTBD8 nc|ENSG00000189195|Q5XKL5-4|BTBD8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2579040527344 2 465.195979 928.377405 0.30686 0.00014275 -0.79207 -0.00036847 -0.48522 -0.00022572 465.19555486848725 50.581 0.54172 50.581 50.2 50.741 0 26 15 2 0 0 0 0.96284 1 9571 9571 8.5933 0 1 1137700 13625 12533 8784 8787 13762 13762 -0.08964855892168089 ESHLHVTM 8 Unmodified _ESHLHVTM_ 0 0 0 REV__ENST00000447263.1_1_1:39980824-39982159:+|nuORF REV__ENST00000447263.1_1_1:39980824-39982159:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7283630371094 2 477.229102 952.443651 0.32168 0.00015352 -2.6399 -0.0012598 -2.3182 -0.0011063 477.22892712812995 66.06 0.62818 62.776 62.476 63.104 -3.2832 43 17 4 0 0 0 0.58432 1 12440 12440 23.148 5.0134 1 4492800 + 13626 21767 8785 8788 13763 13763 -0.034473185311071575 ESHPPACQLL 10 Unmodified _ESHPPACQLL_ 0 0 0 ENST00000569023.5_1_16:20913898-20913970:+|nuORF ENST00000569023.5_1_16:20913898-20913970:+|nuORF ENST00000569023.5_1_16:20913898-20913970:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7679443359375 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 95.969 1 95.969 95.469 96.469 0 0 0 0 0.22552 1 18799 18799 18.146 1.2041 1 13627 11402 8786 8789 13764 13764 -0.020390912968423436 ESHPQMQR 8 Unmodified _ESHPQMQR_ 0 0 0 REV__ENST00000532054.1_1_11:32605755-32605815:+|nuORF REV__ENST00000532054.1_1_11:32605755-32605815:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.18511962890625 3 338.159147 1011.45561 NaN NaN NaN NaN NaN NaN NaN 45.6 1 42.734 42.234 43.234 -2.8653 0 0 0 0.23626 1 8277 8277 0.62683 0 1 + 13628 22779 8787 8790 13765 13765 -0.049657017879326304 ESHQEQHEDY 10 Unmodified _ESHQEQHEDY_ 0 0 0 REV__SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant REV__SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.8948059082031 3 434.505817 1300.49562 0.61038 0.00026521 -0.060123 -2.6124E-05 0.55026 0.00023909 434.5057602700643 23.068 0.38693 21.515 21.304 21.691 -1.5532 18 10 2 0 0 0 0.91149 1 3996 3996 1.9064 0 1 433810 + 13629 15889 8788 8791 13766 13766 -0.14260528374325077 ESHQEQHEDY 10 Unmodified _ESHQEQHEDY_ 0 0 0 REV__SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant REV__SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 434.505817 1300.49562 -0.12173 -5.2892E-05 0.62927 0.00027342 0.50754 0.00022053 434.8403427214826 22.893 0.38737 21.44 21.26 21.647 -1.4535 -0.046206 8.8146E-05 NaN 1.9064 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 356660 + 13630 15889 8788 8791 -0.14260528374325077 ESHQEQHEDY 10 Unmodified _ESHQEQHEDY_ 0 0 0 REV__SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant REV__SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 434.505817 1300.49562 -0.64577 -0.00028059 1.1648 0.00050609 0.51899 0.0002255 434.5062146586314 23.292 0.3694 21.503 21.258 21.628 -1.7886 0.017186 0.00078615 NaN 1.9064 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 455360 + 13631 15889 8788 8791 -0.14260528374325077 ESHSLNLAS 9 Unmodified _ESHSLNLAS_ 0 0 0 REV__ENST00000513468.5_1_5:54516196-54522465:-|nuORF REV__ENST00000513468.5_1_5:54516196-54522465:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7331237792969 2 479.235439 956.456324 0.7054 0.00033805 -0.7934 -0.00038022 -0.087997 -4.2172E-05 479.23507344977514 28.944 0.7674 26.988 26.707 27.475 -1.9561 38 21 2 0 0 0 0.80521 1 5169 5169 3.5965 1.7523 1 1512200 + 13632 19759 8789 8792 13767 13767 -0.02364583867233705 ESHVRLPGPRP 11 Unmodified _ESHVRLPGPRP_ 0 0 0 ENSG00000284546|ENST00000640302|SSU72L3;ENSG00000284438|ENST00000524542|SSU72L1;ENSG00000284306|ENST00000640805|SSU72L2;ENSG00000284018|ENST00000639584|SSU72L5;ENSG00000283873|ENST00000638166|SSU72L4 ENSG00000284546|ENST00000640302|SSU72L3 ENSG00000284546|ENST00000640302|SSU72L3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7725219726562 2 622.846553 1243.67855 NaN NaN NaN NaN NaN NaN NaN 114.51 1 110.04 109.54 110.54 -4.4726 0 0 0 0.22943 1 22566 22566 8.7454 0.58988 1 13633 8061 8790 8793 13768 13768 0.06646115268813446 ESHWVKPP 8 Unmodified _ESHWVKPP_ 0 0 0 REV__IQCG|p.T21M|1|0.36|ENSG00000114473|chr3:197943998-197943998|G/A|missense_variant REV__IQCG|p.T21M|1|0.36|ENSG00000114473|chr3:197943998-197943998|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25238037109375 2 490.253434 978.492316 NaN NaN NaN NaN NaN NaN NaN 27.149 1 25.226 24.726 25.726 -1.9222 0 0 0 0.2074 1 4524 4524 19.439 1.304 1 + 13634 15377 8791 8794 13769 13769 0.002209181002854166 ESIEEHAT 8 Unmodified _ESIEEHAT_ 0 0 0 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;DMXL2|p.F2385Lfs*5|1|0.29|ENSG00000104093|chr15:51474399-51474399|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2303466796875 2 458.206347 914.39814 NaN NaN NaN NaN NaN NaN NaN 18.516 1 18.516 18.016 19.016 0 0 0 0 0.21452 1 2984 2984 13.508 0 1 13635 858 8792 8795 13770 13770 -0.06248265512510898 ESIEELERSL 10 Unmodified _ESIEELERSL_ 0 0 0 REV__ENSG00000125414|ENST00000245503|MYH2 REV__ENSG00000125414|ENST00000245503|MYH2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2806396484375 2 602.806425 1203.5983 0.89978 0.0005424 0.36617 0.00022073 1.266 0.00076313 602.8062033605721 57.667 0.42607 54.772 54.553 54.979 -2.8944 19 11 2 0 0 0 0.91149 1 11044 11044 2.2828 0 1 1422200 + 13636 15813 8793 8796 13771 13771 0.004641643644617943 ESIEELERSL 10 Unmodified _ESIEELERSL_ 0 0 0 REV__ENSG00000125414|ENST00000245503|MYH2 REV__ENSG00000125414|ENST00000245503|MYH2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 602.806425 1203.5983 0.42291 0.00025493 0.27334 0.00016477 0.69625 0.0004197 602.806309266187 58.076 0.48729 54.824 54.579 55.066 -3.2517 0.025816 -4.6433E-05 NaN 2.2828 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1086800 + 13637 15813 8793 8796 0.004641643644617943 ESIFLRDLR 9 Unmodified _ESIFLRDLR_ 0 0 0 REV__ENSG00000132801|ENST00000255152|ZSWIM3 REV__ENSG00000132801|ENST00000255152|ZSWIM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.2070617675781 3 383.552262 1147.63496 -0.094334 -3.6182E-05 0.19145 7.3432E-05 0.09712 3.7251E-05 383.55228432831495 102.88 0.78894 98.861 98.488 99.277 -4.0212 66 21 4 0 0 0 0.70585 1 19761 19761 28.495 10.121 1 12458000 + 13638 16136 8794 8797 13772 13772 0.06704505771654112 ESIFLRDLR 9 Unmodified _ESIFLRDLR_ 0 0 0 REV__ENSG00000132801|ENST00000255152|ZSWIM3 REV__ENSG00000132801|ENST00000255152|ZSWIM3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 383.552262 1147.63496 -0.29016 -0.00011129 0.2954 0.0001133 0.0052328 2.007E-06 383.5523079958668 102.96 0.69871 98.771 98.411 99.109 -4.1861 -0.051287 0.00018545 NaN 28.495 50 19 3 NaN NaN NaN NaN 0 NaN NaN 0 12184000 + 13639 16136 8794 8797 0.06704505771654112 ESIFLRDLR 9 Unmodified _ESIFLRDLR_ 0 0 0 REV__ENSG00000132801|ENST00000255152|ZSWIM3 REV__ENSG00000132801|ENST00000255152|ZSWIM3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 383.552262 1147.63496 0.2508 9.6195E-05 -0.10837 -4.1566E-05 0.14243 5.4629E-05 383.5521656683529 103.18 0.77216 98.834 98.445 99.217 -4.3419 0.012224 -0.00027915 NaN 28.495 59 21 4 NaN NaN NaN NaN 0 NaN NaN 0 9995600 + 13640 16136 8794 8797 0.06704505771654112 ESIFRNGP 8 Unmodified _ESIFRNGP_ 0 0 0 REV__ENST00000607927.1_1_22:18560886-18561522:-|nuORF REV__ENST00000607927.1_1_22:18560886-18561522:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23651123046875 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 32.473 1 30.325 29.825 30.825 -2.1483 0 0 0 0.21486 1 5627 5627 8.5933 0.68312 1 + 13641 23474 8795 8798 13773 13773 -0.006559587964261482 ESIGRTPHAL 10 Unmodified _ESIGRTPHAL_ 0 0 0 REV__nc|ENSG00000105486|P18858-2|LIG1 REV__nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.261962890625 2 540.793455 1079.57236 0.34905 0.00018876 0.1826 9.875E-05 0.53165 0.00028751 540.7932539992651 63.801 0.65336 60.544 60.296 60.949 -3.2567 35 18 3 0 0 0 0.69696 1 11932 11932 11.495 0.6952 1 2019800 + 13642 14994 8796 8799 13774 13774 0.035753597034727136 ESIKISFRV 9 Unmodified _ESIKISFRV_ 0 0 0 REV__ENST00000504878.1_1_5:86708283-86708442:-|nuORF REV__ENST00000504878.1_1_5:86708283-86708442:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.214111328125 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 55.984 1 52.808 52.308 53.308 -3.1761 0 0 0 0.23508 1 10407 10407 6.6304 1.3335 1 + 13643 22470 8797 8800 13775 13775 0.0825400488570267 ESIKSDVK 8 Unmodified _ESIKSDVK_ 0 0 0 REV__PRKCH|p.A236S|1|0.44|ENSG00000027075|chr14:61450845-61450845|G/T|missense_variant REV__PRKCH|p.A236S|1|0.44|ENSG00000027075|chr14:61450845-61450845|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7516174316406 2 453.250557 904.486562 -0.17771 -8.0547E-05 -0.31987 -0.00014498 -0.49758 -0.00022553 453.2503585784618 58.639 0.66458 55.729 55.337 56.001 -2.9105 43 18 3 0 0 0 8448 1 11309 11309 9.544 6.9009 1 4659300 + 13644 24507 8798 8801 13776 13776 0.030497747979552514 ESILITYGKK 10 Unmodified _ESILITYGKK_ 0 0 0 nc|ENSG00000177752|Q8N8F6-4|YIPF7 nc|ENSG00000177752|Q8N8F6-4|YIPF7 nc|ENSG00000177752|Q8N8F6-4|YIPF7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.334716796875 2 576.337164 1150.65977 0.13775 7.9389E-05 -0.65801 -0.00037924 -0.52026 -0.00029985 576.8386757330429 49.346 0.1712 46.347 46.242 46.413 -2.999 6 4 2 0 0 0 0.87854 1 9020 9020 5.7319 0 1 3059300 13645 12485 8799 8802 13777 13777 0.09047140854363533 ESINHVVVF 9 Unmodified _ESINHVVVF_ 0 0 0 ENST00000530208.1_1_11:86014499-86055761:+|nuORF;ENSG00000149196|ENST00000278483|HIKESHI ENST00000530208.1_1_11:86014499-86055761:+|nuORF ENST00000530208.1_1_11:86014499-86055761:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2666625976562 2 522.279649 1042.54475 -0.65796 -0.00034364 0.70625 0.00036886 0.048288 2.522E-05 522.2799642788542 107.4 0.90791 103.08 102.54 103.45 -4.32 43 25 2 0 0 0 0.36931 1 21074 21074 27.629 9.4938 1 3050500 13646 4774 8800 8803 13778 13778 0.025174564432290936 ESIQKFTND 9 Unmodified _ESIQKFTND_ 0 0 0 REV__CON__P02672 REV__CON__P02672 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2609252929688 2 541.261653 1080.50875 0.29094 0.00015747 -0.99243 -0.00053716 -0.70149 -0.00037969 541.2609301203436 19.227 0.10733 17.831 17.741 17.848 -1.3966 4 2 2 0 0 0 0.54076 1 3163 3163 17.113 2.2746 1 231700 + + 13647 13519 8801 8804 13779 13779 -0.028280455242793323 ESITRHSV 8 Unmodified _ESITRHSV_ 0 0 0 REV__ENSG00000176994|ENST00000406438|SMCR8 REV__ENSG00000176994|ENST00000406438|SMCR8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25018310546875 2 464.745973 927.477394 -0.21179 -9.843E-05 1.9269 0.00089554 1.7151 0.00079711 464.7458357699406 42.29 0.90665 39.571 38.933 39.84 -2.7191 54 25 3 0 0 0 0.6095 1 7868 7868 26.884 6.43 1 5552700 + 13648 18533 8802 8805 13780 13780 0.010754262322848263 ESIVKDKVF 9 Unmodified _ESIVKDKVF_ 0 0 0 TRAF3|p.N285Kfs*13|1|0.37|ENSG00000131323|chr14:102897288-102897289|-/A|frameshift_variant;nc|ENSG00000131323|Q13114-2|TRAF3;TRAF3|p.F475Lfs*20|1|0.28|ENSG00000131323|chr14:102905497-102905497|T/-|frameshift_variant;ENSG00000131323|ENST00000392745|TRAF3 TRAF3|p.N285Kfs*13|1|0.37|ENSG00000131323|chr14:102897288-102897289|-/A|frameshift_variant TRAF3|p.N285Kfs*13|1|0.37|ENSG00000131323|chr14:102897288-102897289|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2638549804688 2 532.802957 1063.59136 0.086311 4.5987E-05 -1.7102 -0.00091119 -1.6239 -0.00086521 533.3033546147071 101.98 0.2084 97.796 97.646 97.855 -4.1861 8 5 2 0 0 0 0.60805 1 20032 20032 12.532 1.7076 1 1456000 13649 3666 8803 8806 13781 13781 0.062108962745242025 ESIVQQVTG 9 Unmodified _ESIVQQVTG_ 0 0 0 REV__COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant REV__COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2538757324219 2 480.753464 959.492375 0.45496 0.00021872 -0.58706 -0.00028223 -0.1321 -6.3507E-05 480.75327852278957 31.094 0.59575 28.946 28.813 29.409 -2.1483 20 16 2 0 0 0 0.52396 1 5338 5338 18.146 1.0335 1 491060 + 13650 13496 8804 8807 13782 13782 0.011008733096332435 ESIWTPVP 8 Unmodified _ESIWTPVP_ 0 0 0 nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000167680|ENST00000586582|SEMA6B nc|ENSG00000167680|Q9H3T3-3|SEMA6B nc|ENSG00000167680|Q9H3T3-3|SEMA6B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2494201660156 2 464.742368 927.470183 0.15685 7.2895E-05 0.20637 9.591E-05 0.36322 0.00016881 464.74255456448293 122.11 0.49787 117.56 117.35 117.85 -4.5476 21 13 2 0 0 0 0.64227 1 24035 24035 19.439 2.3261 1 1475900 13651 5833 8805 8808 13783 13783 0.00354693631857117 ESKAREIF 8 Unmodified _ESKAREIF_ 0 0 0 nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25445556640625 2 490.263999 978.513445 0.022089 1.083E-05 -2.7213 -0.0013342 -2.6992 -0.0013233 490.26473991618633 58.184 0.1716 55.274 55.133 55.304 -2.9105 5 4 2 0 0 0 0.69713 1 11159 11159 14.838 6.245 1 262360 13652 2586 8806 8809 13784 13784 0.02332883409144415 ESKDAPTTA 9 Unmodified _ESKDAPTTA_ 0 0 0 REV__nc|ENSG00000184792|Q969R2-2|OSBP2 REV__nc|ENSG00000184792|Q969R2-2|OSBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23089599609375 2 460.221997 918.429441 NaN NaN NaN NaN NaN NaN NaN 32.986 1 30.77 30.27 31.27 -2.2158 0 0 0 0.23508 1 5732 5732 7.2892 1.5288 1 + 13653 18915 8807 8810 13785 13785 -0.033036924784482835 ESKEPNKTF 9 Unmodified _ESKEPNKTF_ 0 0 0 REV__tr|U7SXZ6|U7SXZ6_FUSNUTIGR01619familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00936PE=4SV=1 REV__tr|U7SXZ6|U7SXZ6_FUSNUTIGR01619familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00936PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2745971679688 2 540.272021 1078.52949 0.068156 3.6823E-05 -0.37272 -0.00020137 -0.30456 -0.00016455 540.2718128229795 71.153 0.91953 67.904 67.425 68.345 -3.2492 58 25 4 0 0 0 0.67174 1 13815 13815 7.9102 0 1 6190900 + 13654 25224 8808 8811 13786 13786 -0.006634551446268233 ESKITVSTV 9 Unmodified _ESKITVSTV_ 0 0 0 REV__ENST00000486198.1_1_2:24930634-24934015:+|nuORF REV__ENST00000486198.1_1_2:24930634-24934015:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76898193359375 2 482.27149 962.528426 -0.026661 -1.2858E-05 -0.51791 -0.00024977 -0.54457 -0.00026263 482.2711388753636 87.74 0.79971 83.947 83.612 84.412 -3.7926 35 21 2 0 0 0 0.10265 1 17158 17158 55.503 11.73 1 5394800 + 13655 14468 8809 8812 13787 13787 0.045663304864774545 ESKKPADV 8 Unmodified _ESKKPADV_ 0 0 0 REV__ENST00000544050.1_1_12:4721694-4722916:+|nuORF REV__ENST00000544050.1_1_12:4721694-4722916:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.236083984375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 77.314 1 73.655 73.155 74.155 -3.6588 0 0 0 0.21452 1 14717 14717 13.508 1.8676 1 + 13656 13917 8810 8813 13788 13788 0.019015056264720442 ESKKTHQE 8 Unmodified _ESKKTHQE_ 0 0 0 REV__ENSG00000169895|ENST00000380155|SYAP1 REV__ENSG00000169895|ENST00000380155|SYAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 330.01348876953125 3 329.501568 985.482873 0.044626 1.4704E-05 -0.60104 -0.00019804 -0.55641 -0.00018334 329.5013703437334 51.161 0.70201 48.116 47.768 48.47 -3.0453 41 19 3 0 0 0 1.0248 1 9457 9457 0.35063 0 1 1762600 + 13657 18125 8811 8814 13789 13789 -0.010448949759052084 ESKKVPEMF 9 Unmodified _ESKKVPEMF_ 0 0 0 REV__ENSG00000108773|ENST00000225916|KAT2A REV__ENSG00000108773|ENST00000225916|KAT2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7809448242188 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 20.699 1 20.699 20.199 21.199 0 0 0 0 0.23508 1 3436 3436 10.824 0.75 1 + 13658 15136 8812 8815 13790 13790 0.004749635057351043 ESKLVNEDR 9 Unmodified _ESKLVNEDR_ 0 0 0 REV__nc|ENSG00000161405|Q9UKT9-14|IKZF3 REV__nc|ENSG00000161405|Q9UKT9-14|IKZF3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.85687255859375 3 363.85601 1088.5462 NaN NaN NaN NaN NaN NaN NaN 22.389 1 20.915 20.415 21.415 -1.4742 0 0 0 0.19651 1 3823 3823 0.12781 0 1 + 13659 17457 8813 8816 13791 13791 0.005470457413366603 ESKQAVSPSGP 11 Unmodified _ESKQAVSPSGP_ 0 0 0 REV__ENSG00000140807|ENST00000268459|NKD1 REV__ENSG00000140807|ENST00000268459|NKD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79443359375 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 55.556 1 55.556 55.056 56.056 0 0 0 0 0.095881 1 10609 10609 36.506 11.107 1 + 13660 16597 8814 8817 13792 13792 -0.004043566329301029 ESKQAVSPSGP 11 Unmodified _ESKQAVSPSGP_ 0 0 0 REV__ENSG00000140807|ENST00000268459|NKD1 REV__ENSG00000140807|ENST00000268459|NKD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7745971679688 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 55.651 1 55.651 55.151 56.151 0 0 0 0 0.13908 1 10627 10627 29.841 4.4413 1 + 13661 16597 8814 8817 13793 13793 -0.004043566329301029 ESKQAVSPSGP 11 Unmodified _ESKQAVSPSGP_ 0 0 0 REV__ENSG00000140807|ENST00000268459|NKD1 REV__ENSG00000140807|ENST00000268459|NKD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7759399414062 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 58.219 1 55.308 54.808 55.808 -2.9105 0 0 0 0.095881 1 11179 11179 36.506 5.8697 1 + 13662 16597 8814 8817 13794 13794 -0.004043566329301029 ESKTRVKN 8 Unmodified _ESKTRVKN_ 0 0 0 ENSG00000138823|ENST00000265517|MTTP;MTTP|p.R772C|1|0.05|ENSG00000138823|chr4:99619070-99619070|C/T|missense_variant ENSG00000138823|ENST00000265517|MTTP ENSG00000138823|ENST00000265517|MTTP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2367858886719 2 481.274898 960.535243 NaN NaN NaN NaN NaN NaN NaN 22.64 1 21.187 20.687 21.687 -1.4535 0 0 0 0.23811 1 3618 3618 0.12286 0 1 13663 4213 8815 8818 13795 13795 0.05339688157710043 ESKVEFKAQ 9 Unmodified _ESKVEFKAQ_ 0 0 0 nc|ENSG00000136643|Q96S38-2|RPS6KC1;RPS6KC1|p.F1056Lfs*9|1|0.05|ENSG00000136643|chr1:213272596-213272596|T/-|frameshift_variant;ENSG00000136643|ENST00000366960|RPS6KC1 nc|ENSG00000136643|Q96S38-2|RPS6KC1 nc|ENSG00000136643|Q96S38-2|RPS6KC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2664184570312 2 533.282389 1064.55022 -0.20034 -0.00010684 0.87203 0.00046504 0.67169 0.0003582 533.2827554338344 59.194 0.53768 59.194 59.004 59.541 0 25 14 2 0 0 0 0.41081 1 11405 11405 1.2148 0 1 1800400 13664 4026 8816 8819 13796 13796 0.020531352350417365 ESKYQLLQG 9 Unmodified _ESKYQLLQG_ 0 0 0 REV__DUSP5|p.E314K|1|0.33|ENSG00000138166|chr10:110510211-110510211|G/A|missense_variant REV__DUSP5|p.E314K|1|0.33|ENSG00000138166|chr10:110510211-110510211|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2743530273438 2 533.282389 1064.55022 0.75738 0.0004039 1.3443 0.00071688 2.1017 0.0011208 533.2827773165963 107.28 0.71266 103.15 102.84 103.56 -4.135 34 20 3 0 0 0 0.39168 1 20702 20702 0.87518 0.60979 1 2144800 + 13665 13759 8817 8820 13797 13797 0.020531352350417365 ESLAREGSI 9 Unmodified _ESLAREGSI_ 0 0 0 TRIM77|p.R206S|1|0.27|ENSG00000214414|chr11:89714302-89714302|G/T|missense_variant TRIM77|p.R206S|1|0.27|ENSG00000214414|chr11:89714302-89714302|G/T|missense_variant TRIM77|p.R206S|1|0.27|ENSG00000214414|chr11:89714302-89714302|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7765197753906 2 481.251089 960.487624 0.062855 3.0249E-05 -1.5368 -0.0007396 -1.474 -0.00070935 481.25029242941616 39.033 0.55779 36.591 36.23 36.788 -2.4419 27 15 2 0 0 0 0.34411 1 6924 6924 29.082 0.58707 1 3368600 13666 26522 8818 8821 13798 13798 0.0057998916687438395 ESLCTIPSI 9 Unmodified _ESLCTIPSI_ 0 0 0 REV__ENTHD1|p.V259I|1|0.08|ENSG00000176177|chr22:39821050-39821050|C/T|missense_variant REV__ENTHD1|p.V259I|1|0.08|ENSG00000176177|chr22:39821050-39821050|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7699890136719 2 481.746793 961.479033 NaN NaN NaN NaN NaN NaN NaN 23.491 1 23.491 22.991 23.991 0 0 0 0 0.23508 1 4008 4008 12.532 0 1 + 13667 23491 8819 8822 13799 13799 -0.003247007939762625 ESLDKKNF 8 Unmodified _ESLDKKNF_ 0 0 0 REV__tr|U7SMX9|U7SMX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01741PE=4SV=1 REV__tr|U7SMX9|U7SMX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01741PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26629638671875 2 490.756007 979.497461 0.44654 0.00021914 0.15592 7.6518E-05 0.60245 0.00029566 490.75614712870237 69.561 0.38069 66.025 65.905 66.286 -3.5362 12 10 2 0 0 0 0.96284 1 13132 13132 8.5933 0 1 696400 + 13668 24971 8820 8823 13800 13800 0.006891771722393969 ESLGLVSHL 9 Unmodified _ESLGLVSHL_ 0 0 0 REV__DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant REV__DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7425231933594 2 477.766374 953.518196 0.39563 0.00018902 -0.25251 -0.00012064 0.14312 6.8376E-05 477.7662327793272 119.84 0.89557 115.37 114.85 115.75 -4.467 54 25 3 0 0 0 0.62314 1 22988 22988 11.64 11.64 1 3746500 + 13669 13675 8821 8824 13801 13801 0.0395776755190127 ESLKDEINF 9 Unmodified _ESLKDEINF_ 0 0 0 CON__P07744 CON__P07744 CON__P07744 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.766357421875 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 53.373 1 50.49 49.99 50.99 -2.8837 0 0 0 0.22621 1 10168 10168 15.847 2.8047 1 + 13670 660 8822 8825 13802 13802 -0.013868748644881634 ESLKEELAY 9 Unmodified _ESLKEELAY_ 0 0 0 CON__P19001;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;CON__Q6IFX2 CON__P19001 CON__P19001 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.284912109375 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 130.24 1 125.46 124.96 125.96 -4.7725 0 0 0 0.22962 1 25061 25061 14.838 0.93222 1 + 13671 652 8823 8826 13803 13803 -0.0031399072172462184 ESLKERRY 8 Unmodified _ESLKERRY_ 0 0 0 MTR|p.G1106Wfs*10|1|0.49|ENSG00000116984|chr1:236894464-236894465|-/T|frameshift_variant;nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR MTR|p.G1106Wfs*10|1|0.49|ENSG00000116984|chr1:236894464-236894465|-/T|frameshift_variant MTR|p.G1106Wfs*10|1|0.49|ENSG00000116984|chr1:236894464-236894465|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2619018554688 2 540.793455 1079.57236 0.25696 0.00013896 -0.053106 -2.872E-05 0.20385 0.00011024 540.7932548720827 63.493 0.68514 60.496 60.119 60.804 -2.9975 31 19 3 0 0 0 0.71273 2 12197 12197;12200 12.532 3.1484 1 2477100 13672 2964 8824 8827 13804;13805 13804 0.035753597034727136 ESLKKFEY 8 Unmodified _ESLKKFEY_ 0 0 0 tr|U7SWD0|U7SWD0_FUSNUDUF1963domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00981PE=4SV=1 tr|U7SWD0|U7SWD0_FUSNUDUF1963domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00981PE=4SV=1 tr|U7SWD0|U7SWD0_FUSNUDUF1963domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00981PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2721557617188 2 522.274032 1042.53351 -0.23369 -0.00012205 -2.0976 -0.0010955 -2.3313 -0.0012176 522.2728782980041 45.82 0.72786 42.979 42.619 43.347 -2.8409 34 20 2 0 0 0 0.71273 1 8712 8712 12.532 0.89125 1 1425400 13673 26245 8825 8828 13806 13806 0.013946343490943036 ESLLDKCLY 9 Unmodified _ESLLDKCLY_ 0 0 0 nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS nc|ENSG00000117682|Q86SQ9-3|DHDDS nc|ENSG00000117682|Q86SQ9-3|DHDDS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7872924804688 2 542.273175 1082.5318 0.18785 0.00010187 -0.10783 -5.8472E-05 0.080021 4.3393E-05 542.2730581661076 63.353 1.0929 59.937 59.295 60.388 -3.4158 55 30 4 0 0 0 0.38188 1 11780 11780 26.884 0 1 6872800 13674 2999 8826 8829 13807 13807 -0.006167427311766005 ESLLILGSF 9 Unmodified _ESLLILGSF_ 0 0 0 REV__ENST00000521080.5_1_8:95511544-95524374:-|nuORF REV__ENST00000521080.5_1_8:95511544-95524374:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2685852050781 2 489.778951 977.543348 0.17104 8.377E-05 0.26884 0.00013167 0.43988 0.00021544 489.7790942079533 137.37 0.6339 132.45 132.12 132.76 -4.9215 25 17 2 0 0 0 0.31714 1 26357 26357 30.637 2.1497 1 1626400 + 13675 17726 8827 8830 13808 13808 0.053678223544807224 ESLLLCLTFL 10 Unmodified _ESLLLCLTFL_ 0 0 0 REV__ENSG00000164825|ENST00000297439|DEFB1 REV__ENSG00000164825|ENST00000297439|DEFB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3169555664062 2 576.322668 1150.63078 NaN NaN NaN NaN NaN NaN NaN 127.81 1 123.19 122.69 123.69 -4.6172 0 0 0 2.8426 1 25204 25204 0.063865 0.050599 1 + 13676 17714 8828 8831 13809 13809 0.06149280233694299 ESLLSLDPG 9 Unmodified _ESLLSLDPG_ 0 0 0 REV__ENST00000358625.3_1_9:137023121-137023325:+|nuORF REV__ENST00000358625.3_1_9:137023121-137023325:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2577819824219 2 465.742565 929.470577 0.050517 2.3528E-05 -0.068884 -3.2082E-05 -0.018367 -8.5542E-06 465.74243156892453 93.785 1.1426 89.941 89.466 90.608 -3.844 82 32 4 0 0 0 0.44262 1 18049 18049 23.148 0 1 18123000 + 13677 20839 8829 8832 13810 13810 0.003020685610522378 ESLLSLDPG 9 Unmodified _ESLLSLDPG_ 0 0 0 REV__ENST00000358625.3_1_9:137023121-137023325:+|nuORF REV__ENST00000358625.3_1_9:137023121-137023325:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.742565 929.470577 -0.027352 -1.2739E-05 -0.15209 -7.0834E-05 -0.17944 -8.3573E-05 465.74243210537117 89.861 0.93993 89.861 89.461 90.401 0 -0.021418 -6.4803E-05 NaN 23.148 66 26 3 NaN NaN NaN NaN 0 NaN NaN 0 19824000 + 13678 20839 8829 8832 0.003020685610522378 ESLLSLDPG 9 Unmodified _ESLLSLDPG_ 0 0 0 REV__ENST00000358625.3_1_9:137023121-137023325:+|nuORF REV__ENST00000358625.3_1_9:137023121-137023325:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 465.742565 929.470577 -0.051873 -2.4159E-05 0.014459 6.7343E-06 -0.037413 -1.7425E-05 465.74246665503784 93.816 1.1407 89.825 89.243 90.384 -3.9907 -0.057143 9.0333E-05 NaN 23.148 98 32 4 NaN NaN NaN NaN 0 NaN NaN 0 22618000 + 13679 20839 8829 8832 0.003020685610522378 ESLLVEVE 8 Unmodified _ESLLVEVE_ 0 0 0 REV__nc|ENSG00000068400|Q4V328-4|GRIPAP1 REV__nc|ENSG00000068400|Q4V328-4|GRIPAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24676513671875 2 459.244941 916.475328 -0.28013 -0.00012865 0.21295 9.7798E-05 -0.067179 -3.0852E-05 459.24495567133806 104.39 0.71735 100.17 99.791 100.51 -4.2183 53 20 3 0 0 0 0.14825 1 20579 20579 53.576 6.6547 1 13299000 + 13680 14227 8830 8833 13811 13811 0.013749527038157794 ESLLYTLQL 9 Unmodified _ESLLYTLQL_ 0 0 0 REV__ENSG00000142235|ENST00000600059|LMTK3 REV__ENSG00000142235|ENST00000600059|LMTK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2849731445312 2 540.30279 1078.59103 0.0092674 5.0072E-06 0.52623 0.00028433 0.5355 0.00028933 540.3025679267819 104.39 0.92117 100.17 99.621 100.54 -4.2183 55 26 3 0 0 0 0.62102 1 20519 20519 11.64 2.2929 1 3867500 + 13681 16663 8831 8834 13812 13812 0.05487476554662862 ESLLYTLQL 9 Unmodified _ESLLYTLQL_ 0 0 0 REV__ENSG00000142235|ENST00000600059|LMTK3 REV__ENSG00000142235|ENST00000600059|LMTK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2820434570312 2 540.30279 1078.59103 0.78913 0.00042637 -0.29763 -0.00016081 0.4915 0.00026556 540.3021579930198 104.22 0.92158 100.17 99.698 100.62 -4.0543 58 25 3 0 0 0 0.62102 1 20033 20033 11.64 2.2929 1 4920300 + 13682 16663 8831 8834 13813 13813 0.05487476554662862 ESLNFQKI 8 Unmodified _ESLNFQKI_ 0 0 0 ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000154608|Q96L14|CEP170P1 ENST00000502249.6_1_4:119435248-119475252:+|nuORF ENST00000502249.6_1_4:119435248-119475252:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2676696777344 2 489.766374 977.518196 0.13047 6.39E-05 0.040832 1.9998E-05 0.1713 8.3899E-05 489.766516150163 74.006 0.55913 70.412 70.151 70.71 -3.594 27 15 2 0 0 0 0.31517 1 14087 14087 36.044 1.8569 1 3466800 13683 10621 8832 8835 13814 13814 0.028537675519032746 ESLNFQKI 8 Unmodified _ESLNFQKI_ 0 0 0 ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000154608|Q96L14|CEP170P1 ENST00000502249.6_1_4:119435248-119475252:+|nuORF ENST00000502249.6_1_4:119435248-119475252:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.766374 977.518196 0.024042 1.1775E-05 0.21991 0.0001077 0.24395 0.00011948 489.7665166712795 73.751 0.55514 70.387 70.12 70.675 -3.3643 -0.056153 0.00019229 NaN 36.044 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4639600 13684 10621 8832 8835 0.028537675519032746 ESLPSERKV 9 Unmodified _ESLPSERKV_ 0 0 0 ENST00000590277.1_1_19:9929234-9929697:-|nuORF;ENST00000588922.5_1_19:9929234-9929667:-|nuORF ENST00000590277.1_1_19:9929234-9929697:-|nuORF ENST00000590277.1_1_19:9929234-9929697:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2750244140625 2 522.787838 1043.56112 0.014584 7.6241E-06 -0.16137 -8.436E-05 -0.14678 -7.6736E-05 522.7878091430904 26.03 0.38247 24.108 23.917 24.299 -1.9222 14 10 2 0 0 0 0.87974 1 4316 4316 1.8442 0.19162 1 376810 13685 11579 8833 8836 13815 13815 0.04108537609317864 ESLRKNLEVGY 11 Unmodified _ESLRKNLEVGY_ 0 0 0 CELSR2|p.E300K|1|0.19|ENSG00000143126|chr1:109250977-109250977|G/A|missense_variant CELSR2|p.E300K|1|0.19|ENSG00000143126|chr1:109250977-109250977|G/A|missense_variant CELSR2|p.E300K|1|0.19|ENSG00000143126|chr1:109250977-109250977|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21630859375 3 436.569981 1306.68811 -0.36148 -0.00015781 0.41731 0.00018219 0.055835 2.4376E-05 436.5702561618844 104.81 1.716 100.59 100.16 101.88 -4.2183 177 48 6 0 0 0 0.72919 1 20547 20547 9.7643 0.52048 1 324880000 13686 479 8834 8837 13816 13816 0.04703838763657586 ESLRYYRG 8 Unmodified _ESLRYYRG_ 0 0 0 REV__ENSG00000223572|ENST00000413453|CKMT1A REV__ENSG00000223572|ENST00000413453|CKMT1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26708984375 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 108.19 1 103.87 103.37 104.37 -4.32 0 0 0 0.16002 1 21316 21316 36.044 12.896 1 + 13687 19715 8835 8838 13817 13817 3.401640651645721E-05 ESLRYYRG 8 Unmodified _ESLRYYRG_ 0 0 0 REV__ENSG00000223572|ENST00000413453|CKMT1A REV__ENSG00000223572|ENST00000413453|CKMT1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2677001953125 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 108.36 1 103.95 103.45 104.45 -4.4121 0 0 0 0.18898 1 20792 20792 28.487 10.352 1 + 13688 19715 8835 8838 13818 13818 3.401640651645721E-05 ESLSDDKLED 10 Unmodified _ESLSDDKLED_ 0 0 0 ENST00000380194.3_1_9:117609392-117609554:+|nuORF ENST00000380194.3_1_9:117609392-117609554:+|nuORF ENST00000380194.3_1_9:117609392-117609554:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3331909179688 2 575.75914 1149.50373 0.64278 0.00037009 -1.145 -0.00065923 -0.5022 -0.00028914 575.7581107194584 46.772 0.42538 46.772 46.592 47.017 0 24 11 3 0 0 0 0.78938 1 8834 8834 27.629 3.6082 1 1491600 13689 9313 8836 8839 13819 13819 -0.06504394177568429 ESLSDDKLED 10 Unmodified _ESLSDDKLED_ 0 0 0 ENST00000380194.3_1_9:117609392-117609554:+|nuORF ENST00000380194.3_1_9:117609392-117609554:+|nuORF ENST00000380194.3_1_9:117609392-117609554:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 575.75914 1149.50373 -0.12089 -6.9602E-05 -0.41116 -0.00023673 -0.53205 -0.00030633 575.759011377473 49.609 0.41995 46.728 46.556 46.976 -2.8811 -0.022016 0.00020539 NaN 27.629 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1276200 13690 9313 8836 8839 -0.06504394177568429 ESLSRKTT 8 Unmodified _ESLSRKTT_ 0 0 0 ENST00000561344.5_1_15:96826128-96833920:-|nuORF ENST00000561344.5_1_15:96826128-96833920:-|nuORF ENST00000561344.5_1_15:96826128-96833920:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5290832519531 2 461.253631 920.49271 NaN NaN NaN NaN NaN NaN NaN 154.07 1 149.3 148.8 149.8 -4.7684 0 0 0 0.21486 1 30619 30619 9.3474 0 1 13691 11303 8837 8840 13820 13820 0.029282930294698417 ESLTIDQYL 9 Unmodified _ESLTIDQYL_ 0 0 0 REV__ENST00000557758.1_1_14:23391634-23392032:-|nuORF REV__ENST00000557758.1_1_14:23391634-23392032:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.273681640625 2 541.274229 1080.53391 0.12046 6.5199E-05 0.3756 0.0002033 0.49605 0.0002685 541.2740162816084 129.91 0.38815 125.08 124.8 125.19 -4.8355 17 10 2 0 0 0 0.19983 1 24948 24948 7.4771 0 1 1054900 + 13692 23015 8838 8841 13821 13821 -0.0031399072172462184 ESLTLPRN 8 Unmodified _ESLTLPRN_ 0 0 0 REV__ENSG00000100412|ENST00000216254|ACO2 REV__ENSG00000100412|ENST00000216254|ACO2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25750732421875 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 23.488 1 23.488 22.988 23.988 0 0 0 0 0.21486 1 4007 4007 12.532 0 1 + 13693 14709 8839 8842 13822 13822 0.03068596892092046 ESLVPSPPP 9 Unmodified _ESLVPSPPP_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5376892089844 2 461.74765 921.480748 NaN NaN NaN NaN NaN NaN NaN 31.945 1 31.945 31.445 32.445 0 0 0 0 0.23508 1 5785 5785 8.5933 0.68312 1 13694 3645 8840 8843 13823 13823 0.01686676286283273 ESLYAPPVS 9 Unmodified _ESLYAPPVS_ 0 0 0 REV__ENST00000555737.5_1_15:91504478-91504526:+|nuORF REV__ENST00000555737.5_1_15:91504478-91504526:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77752685546875 2 481.745108 961.475663 NaN NaN NaN NaN NaN NaN NaN 72.927 1 69.299 68.799 69.799 -3.6275 0 0 0 0.20628 1 13779 13779 21.747 2.3076 1 + 13695 22987 8841 8844 13824 13824 -0.006616275763235535 ESLYLQRA 8 Unmodified _ESLYLQRA_ 0 0 0 REV__nc|ENSG00000188483|Q5T953-2|IER5L REV__nc|ENSG00000188483|Q5T953-2|IER5L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2639465332031 2 490.263999 978.513445 0.081648 4.0029E-05 -0.13587 -6.661E-05 -0.054218 -2.6581E-05 490.26389789986007 67.31 0.62753 63.983 63.791 64.419 -3.3268 34 17 3 0 0 0 8448 1 12677 12677 0.68139 0.27313 1 2246700 + 13696 19148 8842 8845 13825 13825 0.023328834091330464 ESLYSNYGY 9 Unmodified _ESLYSNYGY_ 0 0 0 REV__ENSG00000185274|ENST00000333538|GALNT17 REV__ENSG00000185274|ENST00000333538|GALNT17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.780029296875 2 548.235104 1094.45566 0.086811 4.7593E-05 0.64236 0.00035216 0.72917 0.00039976 548.2353479077594 34.087 0.48395 31.769 31.531 32.015 -2.3175 29 13 3 0 0 0 0.69192 1 6249 6249 14.838 0 1 2075100 + 13697 18953 8843 8846 13826 13826 -0.0877942330694168 ESMAGHQLG 9 Unmodified _ESMAGHQLG_ 0 0 0 REV__TENM2|p.R1906H|1|0.39|ENSG00000145934|chr5:168244616-168244616|G/A|missense_variant REV__TENM2|p.R1906H|1|0.39|ENSG00000145934|chr5:168244616-168244616|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.241943359375 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 59.554 1 59.554 59.054 60.054 0 0 0 0 0.23508 1 11410 11410 10.824 1.4765 1 + 13698 24786 8844 8847 13827 13827 -0.059801954278327685 ESMEELVEEG 10 Unmodified _ESMEELVEEG_ 0 0 0 REV__ENSG00000173269|ENST00000372027|MMRN2 REV__ENSG00000173269|ENST00000372027|MMRN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.33544921875 2 576.242269 1150.46998 NaN NaN NaN NaN NaN NaN NaN 53.841 1 53.841 53.341 54.341 0 0 0 0 0.22535 1 10259 10259 20.454 1.1966 1 + 13699 18347 8845 8848 13828 13828 -0.09923138940985154 ESMNQVSAQEG 11 Unmodified _ESMNQVSAQEG_ 0 0 0 REV__ENST00000489935.1_1_1:110754015-110754261:+|nuORF REV__ENST00000489935.1_1_1:110754015-110754261:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.251708984375 2 590.25096 1178.48737 NaN NaN NaN NaN NaN NaN NaN 45.64 1 42.799 42.299 43.299 -2.8409 0 0 0 0.22595 1 8602 8602 11.495 1.4208 1 + 13700 22298 8846 8849 13829 13829 -0.09473798615294982 ESMQLERELNE 11 Unmodified _ESMQLERELNE_ 0 0 0 REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2464294433594 3 459.882008 1376.62419 0.66205 0.00030446 0.13218 6.0785E-05 0.79422 0.00036525 459.8813820647672 23.083 0.49573 21.529 21.304 21.799 -1.5532 17 13 2 0 0 0 0.96072 1 3985 3985 2.8433 0 1 336070 + 13701 13369 8847 8850 13830 13830 -0.049053094556029464 ESMSKSACSL 10 Unmodified _ESMSKSACSL_ 0 0 0 REV__nc|ENSG00000173567|Q8IZF5|ADGRF3 REV__nc|ENSG00000173567|Q8IZF5|ADGRF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2765502929688 2 521.730817 1041.44708 0.26831 0.00013998 1.9895 0.001038 2.2578 0.001178 521.7321541068666 99.479 0.79709 95.522 95.071 95.868 -3.9564 33 22 2 0 0 0 0.33677 1 19098 19098 27.629 0 1 867440 + 13702 24176 8848 8851 13831 13831 -0.07198436539420072 ESMSQTLHSLE 11 Unmodified _ESMSQTLHSLE_ 0 0 0 ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5 ENST00000567478.5_1_16:19467998-19503571:+|nuORF ENST00000567478.5_1_16:19467998-19503571:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.75 2 631.290085 1260.56562 0.2583 0.00016306 1.4132 0.00089211 1.6714 0.0010552 631.2909404425762 39.387 0.38477 36.945 36.788 37.173 -2.4419 18 10 2 0 0 0 0.96036 1 7039 7039 8.1555 3.2585 1 1902100 13703 11385 8849 8852 13832 13832 -0.0542436603002443 ESMTPHHHG 9 Unmodified _ESMTPHHHG_ 0 0 0 REV__ENST00000377669.6_1_13:74269403-74269595:-|nuORF REV__ENST00000377669.6_1_13:74269403-74269595:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.1960144042969 3 344.815381 1031.42431 -0.34111 -0.00011762 1.1293 0.00038941 0.78822 0.00027179 344.81577159098674 33.634 0.35556 33.634 33.439 33.795 0 14 9 2 0 0 0 0.6226 1 6141 6141 0.073264 0.073264 1 915650 + 13704 21102 8850 8853 13833 13833 -0.09014274822015977 ESMTPHHHG 9 Unmodified _ESMTPHHHG_ 0 0 0 REV__ENST00000377669.6_1_13:74269403-74269595:-|nuORF REV__ENST00000377669.6_1_13:74269403-74269595:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 344.815381 1031.42431 0.1432 4.9378E-05 0.72661 0.00025055 0.86981 0.00029993 344.8155425667653 35.97 0.48837 33.717 33.399 33.888 -2.2527 0.075207 -0.00041164 NaN 0.073264 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 959290 + 13705 21102 8850 8853 -0.09014274822015977 ESMTPHHHG 9 Unmodified _ESMTPHHHG_ 0 0 0 REV__ENST00000377669.6_1_13:74269403-74269595:-|nuORF REV__ENST00000377669.6_1_13:74269403-74269595:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 344.815381 1031.42431 -0.39105 -0.00013484 0.89278 0.00030785 0.50174 0.00017301 344.8156290179119 35.979 0.31431 33.703 33.49 33.804 -2.2766 0.06083 -0.00023975 NaN 0.073264 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 420360 + 13706 21102 8850 8853 -0.09014274822015977 ESNEPARGP 9 Unmodified _ESNEPARGP_ 0 0 0 REV__nc|ENSG00000099954|Q9BXF3|CECR2 REV__nc|ENSG00000099954|Q9BXF3|CECR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7254638671875 2 478.725238 955.435923 0.44814 0.00021454 -0.37871 -0.0001813 0.069434 3.324E-05 478.72505362028545 30.822 1.3641 28.705 27.634 28.998 -2.1167 57 38 2 0 0 0 0.58804 1 5520 5520 13.906 3.0821 1 893010 + 13707 14650 8851 8854 13834 13834 -0.043577545270409246 ESNGVTWPA 9 Unmodified _ESNGVTWPA_ 0 0 0 REV__ENST00000461790.1_1_1:167599603-167602966:+|nuORF REV__ENST00000461790.1_1_1:167599603-167602966:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23681640625 2 480.724707 959.43486 -0.12387 -5.9547E-05 0.048751 2.3436E-05 -0.075119 -3.6111E-05 480.7244976471336 51.192 1.2807 48.31 47.856 49.136 -2.8824 124 36 5 0 0 0 0.69192 1 9849 9849 14.838 0 1 51420000 + 13708 21897 8852 8855 13835 13835 -0.04647968895972099 ESNNKVKKP 9 Unmodified _ESNNKVKKP_ 0 0 0 REV__tr|U7SSZ1|U7SSZ1_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01554PE=4SV=1 REV__tr|U7SSZ1|U7SSZ1_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01554PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2611083984375 2 522.29583 1042.57711 0.18162 9.486E-05 -0.19993 -0.00010442 -0.018309 -9.5629E-06 522.2956361637711 21.09 0.38436 19.616 19.385 19.769 -1.4742 16 10 2 0 0 0 0.74257 1 3583 3583 4.3292 0 1 723190 + 13709 25076 8853 8856 13836 13836 0.057522438462456194 ESNPRLSQ 8 Unmodified _ESNPRLSQ_ 0 0 0 REV__nc|ENSG00000167799|Q8WV74-2|NUDT8 REV__nc|ENSG00000167799|Q8WV74-2|NUDT8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.247802734375 2 465.735606 929.456658 -0.057909 -2.697E-05 1.7484 0.00081427 1.6904 0.0007873 465.73628796414664 18.747 0.34096 17.436 17.282 17.623 -1.3109 14 9 2 0 0 0 0.98676 1 3096 3096 15.847 3.3156 1 379600 + 13710 17972 8854 8857 13837 13837 -0.010891641473676827 ESNPRLSQ 8 Unmodified _ESNPRLSQ_ 0 0 0 REV__nc|ENSG00000167799|Q8WV74-2|NUDT8 REV__nc|ENSG00000167799|Q8WV74-2|NUDT8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.735606 929.456658 0.051776 2.4114E-05 1.1726 0.00054613 1.2244 0.00057025 465.7361705808521 17.441 0.2783 17.441 17.31 17.589 0 0.021316 -0.00040907 NaN 15.847 14 7 2 NaN NaN NaN NaN 0 NaN NaN 0 866790 + 13711 17972 8854 8857 -0.010891641473676827 ESNPRLSQ 8 Unmodified _ESNPRLSQ_ 0 0 0 REV__nc|ENSG00000167799|Q8WV74-2|NUDT8 REV__nc|ENSG00000167799|Q8WV74-2|NUDT8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.735606 929.456658 -0.40085 -0.00018669 2.4284 0.001131 2.0275 0.00094429 465.7365515100818 18.707 0.21003 17.382 17.222 17.432 -1.3251 -0.038038 0.00076062 NaN 15.847 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 388560 + 13712 17972 8854 8857 -0.010891641473676827 ESNQMHRFM 9 Unmodified _ESNQMHRFM_ 0 0 0 REV__nc|ENSG00000101972|Q8N3U4|STAG2 REV__nc|ENSG00000101972|Q8N3U4|STAG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2544555664062 2 590.255325 1178.4961 NaN NaN NaN NaN NaN NaN NaN 175.61 1 170.71 170.21 171.21 -4.9008 0 0 0 0.19649 1 35003 35003 0.073264 0.029476 1 + 13713 14812 8855 8858 13838 13838 -0.0860110345981866 ESNRLIELI 9 Unmodified _ESNRLIELI_ 0 0 0 REV__tr|U7T054|U7T054_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00733PE=4SV=1 REV__tr|U7T054|U7T054_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00733PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7696533203125 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 67.202 1 67.202 66.702 67.702 0 0 0 0 0.23508 1 12986 12986 8.7454 0.15213 1 + 13714 25262 8856 8859 13839 13839 0.06869397160471635 ESNRWRNY 8 Unmodified _ESNRWRNY_ 0 0 0 REV__NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant REV__NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.5113220214844 3 375.512578 1123.5159 NaN NaN NaN NaN NaN NaN NaN 18.933 1 17.298 16.798 17.798 -1.6351 0 0 0 0.21486 1 2829 2829 3.9444 1.2092 1 + 13715 23919 8857 8860 13840 13840 -0.040912681331974454 ESNSIIPAE 9 Unmodified _ESNSIIPAE_ 0 0 0 REV__nc|ENSG00000136536|Q9H992-2|MARCHF7 REV__nc|ENSG00000136536|Q9H992-2|MARCHF7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2520446777344 2 480.237647 958.460741 -0.1127 -5.4125E-05 0.48374 0.00023231 0.37104 0.00017819 480.23781131259335 44.068 0.83871 41.321 40.941 41.779 -2.7475 60 23 4 0 0 0 0.40602 2 7932 7932;7954 25.399 2.663 1 7797800 + 13716 16338 8858 8861 13841;13842 13841 -0.020151194443315035 ESNVSLLNIV 10 Unmodified _ESNVSLLNIV_ 0 0 0 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7744140625 2 544.303321 1086.59209 0.25239 0.00013738 -2.3916 -0.0013018 -2.1393 -0.0011644 544.8043577680075 129.01 0.31644 124.38 124.15 124.47 -4.6292 12 8 2 0 0 0 0.66019 1 25412 25412 34.932 1.4872 1 2292100 + 13717 17744 8859 8862 13843 13843 0.05225690923566617 ESPAENYYA 9 Unmodified _ESPAENYYA_ 0 0 0 REV__ENSG00000129152|ENST00000250003|MYOD1 REV__ENSG00000129152|ENST00000250003|MYOD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2805786132812 2 522.219454 1042.42436 -0.23122 -0.00012075 -2.2194 -0.001159 -2.4506 -0.0012797 522.2176495859437 132.84 0.14487 128.2 128.09 128.23 -4.6399 5 3 2 0 0 0 0.84208 1 26165 26165 3.9444 1.6417 1 418360 + 13718 15949 8860 8863 13844 13844 -0.09515996341065147 ESPAPRFSA 9 Unmodified _ESPAPRFSA_ 0 0 0 REV__ENST00000524270.5_1_12:6981776-6982483:-|nuORF REV__ENST00000524270.5_1_12:6981776-6982483:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2410888671875 2 481.240524 960.466495 1.0728 0.00051626 -0.68871 -0.00033143 0.38405 0.00018482 481.240325930732 24.797 0.2737 23.149 22.926 23.199 -1.6482 13 7 2 0 0 0 0.58804 1 4340 4340 13.906 1.3745 1 649610 + 13719 22670 8861 8864 13845 13845 -0.015319761420073519 ESPAPSSRV 9 Unmodified _ESPAPSSRV_ 0 0 0 REV__HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant REV__HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25555419921875 2 465.237981 928.461409 0.012042 5.6023E-06 1.4334 0.00066686 1.4454 0.00067246 465.23885899129203 32.95 0.9733 30.719 30.331 31.304 -2.2305 33 27 2 0 0 0 0.65387 1 5945 5945 9.3831 0 1 638140 + 13720 14618 8862 8865 13846 13846 -0.005682800046088232 ESPAVCPNC 9 Unmodified _ESPAVCPNC_ 0 0 0 ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2449035644531 2 460.186045 918.357538 0.21733 0.00010001 0.78512 0.0003613 1.0024 0.00046131 460.18633396903203 120.61 0.74947 120.61 120.18 120.93 0 34 20 2 0 0 0 0.74655 1 23789 23789 21.747 9.2151 1 2340400 13721 4562 8863 8866 13847 13847 -0.1049064642814983 ESPAVCPNC 9 Unmodified _ESPAVCPNC_ 0 0 0 ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2466735839844 2 460.186045 918.357538 0.27876 0.00012828 0.98372 0.0004527 1.2625 0.00058098 460.1864194444836 125.49 0.84097 120.72 120.34 121.18 -4.7681 48 23 3 0 0 0 0.74655 1 24047 24047 21.747 2.3076 1 4844700 13722 4562 8863 8866 13848 13848 -0.1049064642814983 ESPAVCPNC 9 Unmodified _ESPAVCPNC_ 0 0 0 ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 460.186045 918.357538 0.21779 0.00010023 0.71786 0.00033035 0.93566 0.00043058 460.1863236710846 125.26 0.70288 120.61 120.31 121.02 -4.6495 -0.058267 -0.00014325 NaN 21.747 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2253000 13723 4562 8863 8866 -0.1049064642814983 ESPEPFKYS 9 Unmodified _ESPEPFKYS_ 0 0 0 ENSG00000158023|ENST00000288912|CFAP251;nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENST00000535257.1_1_12:122391860-122397069:+|nuORF ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.788330078125 2 542.253297 1082.49204 0.48882 0.00026506 0.17784 9.6432E-05 0.66665 0.0003615 542.2534394339344 108.08 1.6741 108.08 107.13 108.81 0 114 47 4 0 0 0 0.5059 1 21238 21238 19.257 3.4098 1 13488000 13724 5147 8864 8867 13849 13849 -0.04590546410236129 ESPEPFKYS 9 Unmodified _ESPEPFKYS_ 0 0 0 ENSG00000158023|ENST00000288912|CFAP251;nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENST00000535257.1_1_12:122391860-122397069:+|nuORF ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7959594726562 2 542.253297 1082.49204 0.049443 2.681E-05 0.25287 0.00013712 0.30232 0.00016393 542.253286620746 112.9 1.3349 108.38 107.52 108.85 -4.5259 90 37 4 0 0 0 0.6329 1 21641 21641 10.824 0 1 15366000 13725 5147 8864 8867 13850 13850 -0.04590546410236129 ESPGDPLIE 9 Unmodified _ESPGDPLIE_ 0 0 0 SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant;ENSG00000177409|ENST00000318238|SAMD9L SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73291015625 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 55.692 1 52.809 52.309 53.309 -2.8837 0 0 0 0.23508 1 10661 10661 11.64 0.81637 1 13726 6509 8865 8868 13851 13851 -0.029665218186096354 ESPHHQRPG 9 Unmodified _ESPHHQRPG_ 0 0 0 REV__ENSG00000255359|ENST00000532798|CCDC179 REV__ENSG00000255359|ENST00000532798|CCDC179 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2700805664062 2 522.752121 1043.48969 -0.22426 -0.00011723 2.2531 0.0011778 2.0289 0.0010606 522.7539625926822 60.104 0.45153 57.171 56.923 57.375 -2.9333 20 12 2 0 0 0 0.84208 1 11591 11591 3.9444 0 1 802380 + 13727 19854 8866 8869 13852 13852 -0.03031537304673293 ESPHIHPG 8 Unmodified _ESPHIHPG_ 0 0 0 REV__ENST00000369644.5_1_1:113231057-113231162:+|nuORF REV__ENST00000369644.5_1_1:113231057-113231162:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2145080566406 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 28.479 1 28.479 27.979 28.979 0 0 0 0 0.21486 1 5057 5057 10.183 3.4602 1 + 13728 20965 8867 8870 13853 13853 -0.027245144849416647 ESPINASTLY 10 Unmodified _ESPINASTLY_ 0 0 0 REV__ENSG00000162972|ENST00000392290|MAIP1 REV__ENSG00000162972|ENST00000392290|MAIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7716674804688 2 547.771854 1093.52915 0.13111 7.1819E-05 -0.38976 -0.0002135 -0.25865 -0.00014168 547.7716847586812 86.47 0.53312 82.743 82.442 82.975 -3.727 33 14 3 0 0 0 0.61964 1 16884 16884 18.146 1.2041 1 5064300 + 13729 17543 8868 8871 13854 13854 -0.01386874864465426 ESPINASTLY 10 Unmodified _ESPINASTLY_ 0 0 0 REV__ENSG00000162972|ENST00000392290|MAIP1 REV__ENSG00000162972|ENST00000392290|MAIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7721557617188 2 547.771854 1093.52915 0.16469 9.0213E-05 -0.54676 -0.0002995 -0.38207 -0.00020929 547.7717054366459 86.474 0.5643 82.745 82.448 83.012 -3.7289 34 15 3 0 0 0 0.61964 1 16500 16500 18.146 1.9972 1 4879400 + 13730 17543 8868 8871 13855 13855 -0.01386874864465426 ESPKIHRQ 8 Unmodified _ESPKIHRQ_ 0 0 0 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.005615234375 3 332.185802 993.535577 -0.63167 -0.00020983 -0.15798 -5.2478E-05 -0.78965 -0.00026231 332.1857064990543 37.969 0.453 35.5 35.223 35.676 -2.4688 25 12 3 0 0 0 1.0248 1 6984 6984 6.7232 3.1267 1 3107000 + 13731 18062 8869 8872 13856 13856 0.038551078775640235 ESPKIHRQ 8 Unmodified _ESPKIHRQ_ 0 0 0 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 332.185802 993.535577 -0.40721 -0.00013527 -0.30709 -0.00010201 -0.71431 -0.00023728 332.18565280946973 35.561 0.37461 35.561 35.382 35.757 0 0.054563 7.6935E-05 NaN 6.7232 26 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2791200 + 13732 18062 8869 8872 0.038551078775640235 ESPKIHRQ 8 Unmodified _ESPKIHRQ_ 0 0 0 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 332.185802 993.535577 0.076224 2.532E-05 -0.68258 -0.00022674 -0.60635 -0.00020142 332.1854926060964 37.884 0.41587 35.442 35.215 35.63 -2.4419 -0.064738 -0.00029726 NaN 6.7232 27 11 4 NaN NaN NaN NaN 0 NaN NaN 0 3051000 + 13733 18062 8869 8872 0.038551078775640235 ESPKIHRQ 8 Unmodified _ESPKIHRQ_ 0 0 0 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 332.185802 993.535577 -0.47544 -0.00015793 -0.42165 -0.00014006 -0.89709 -0.000298 332.18563802906806 37.861 0.37965 35.523 35.256 35.636 -2.3375 0.016905 -3.7225E-05 NaN 6.7232 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3364800 + 13734 18062 8869 8872 0.038551078775640235 ESPLEVWLN 9 Unmodified _ESPLEVWLN_ 0 0 0 nc|ENSG00000114646|O95196-3|CSPG5;ENSG00000114646|ENST00000264723|CSPG5;nc|ENSG00000114646|O95196|CSPG5 nc|ENSG00000114646|O95196-3|CSPG5 nc|ENSG00000114646|O95196-3|CSPG5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7764282226562 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 23.452 1 21.999 21.499 22.499 -1.4535 0 0 0 0.19687 1 3784 3784 8.1555 1.5252 1 13735 2802 8870 8873 13857 13857 -2.2671392343909247E-05 ESPLKYLL 8 Unmodified _ESPLKYLL_ 0 0 0 ENST00000429033.1_1_21:32433078-32433324:-|nuORF ENST00000429033.1_1_21:32433078-32433324:-|nuORF ENST00000429033.1_1_21:32433078-32433324:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78240966796875 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 156.78 1 151.51 151.01 152.01 -5.2712 0 0 0 0.23312 1 30411 30411 6.2058 0 1 13736 9758 8871 8874 13858 13858 0.06612126217078185 ESPLPGAPPP 10 Unmodified _ESPLPGAPPP_ 0 0 0 ENST00000240285.9_1_8:74206860-74207115:+|nuORF ENST00000240285.9_1_8:74206860-74207115:+|nuORF ENST00000240285.9_1_8:74206860-74207115:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25439453125 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 34.004 1 31.686 31.186 32.186 -2.3175 0 0 0 0.22588 1 6233 6233 10.824 0.64053 1 13737 8184 8872 8875 13859 13859 0.00982078660570096 ESPNLENI 8 Unmodified _ESPNLENI_ 0 0 0 ENST00000556454.1_1_14:95660863-95677170:-|nuORF;CLMN|p.K865Rfs*10|2|0.35|ENSG00000165959|chr14:95196612-95196612|T/-|frameshift_variant;ENSG00000165959|ENST00000298912|CLMN ENST00000556454.1_1_14:95660863-95677170:-|nuORF ENST00000556454.1_1_14:95660863-95677170:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22406005859375 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 78.797 1 78.797 78.297 79.297 0 0 0 0 0.18303 1 15336 15336 30.637 2.1497 1 13738 579 8873 8876 13860 13860 -0.026113886158100286 ESPNQKVL 8 Unmodified _ESPNQKVL_ 0 0 0 REV__ENST00000566523.1_1_16:19557749-19557797:+|nuORF REV__ENST00000566523.1_1_16:19557749-19557797:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2249755859375 2 457.750724 913.486896 0.65484 0.00029975 -0.44597 -0.00020414 0.20887 9.5611E-05 457.7504735450487 28.611 0.30777 26.655 26.502 26.81 -1.9561 10 8 2 0 0 0 8448 1 5124 5124 2.643 1.188 1 302340 + 13739 14891 8874 8877 13861 13861 0.026691945178072274 ESPPILLPP 9 Unmodified _ESPPILLPP_ 0 0 0 REV__ENSG00000116285|ENST00000377482|ERRFI1 REV__ENSG00000116285|ENST00000377482|ERRFI1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78082275390625 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 20.274 1 18.639 18.139 19.139 -1.6351 0 0 0 0.23508 1 3112 3112 8.5933 0 1 + 13740 15478 8875 8878 13862 13862 0.06612126217100922 ESPPVTEHQA 10 Unmodified _ESPPVTEHQA_ 0 0 0 ENST00000261402.6_1_12:106532525-106533446:-|nuORF ENST00000261402.6_1_12:106532525-106533446:-|nuORF ENST00000261402.6_1_12:106532525-106533446:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7796020507812 2 547.759278 1093.504 0.71713 0.00039281 -0.56241 -0.00030806 0.15472 8.4752E-05 547.7591206829496 21.792 0.1462 20.318 20.231 20.377 -1.4742 6 3 2 0 0 0 0.86078 1 3711 3711 8.1555 3.8263 1 326900 13741 8297 8876 8879 13863 13863 -0.03900929667042874 ESPQSLLGGPP 11 Unmodified _ESPQSLLGGPP_ 0 0 0 nc|ENSG00000256463|Q9BXA9-3|SALL3;nc|ENSG00000256463|Q9BXA9-4|SALL3;nc|ENSG00000256463|Q9BXA9-2|SALL3;ENSG00000256463|ENST00000537592|SALL3 nc|ENSG00000256463|Q9BXA9-3|SALL3 nc|ENSG00000256463|Q9BXA9-3|SALL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2798461914062 2 541.279846 1080.54514 0.45024 0.00024371 -0.89359 -0.00048368 -0.44335 -0.00023998 541.2791538697451 100.92 0.51695 96.927 96.619 97.136 -3.9895 17 14 2 0 0 0 0.46434 1 19388 19388 24.991 3.454 1 959420 13742 7937 8877 8880 13864 13864 0.008088313724556428 ESPREKTA 8 Unmodified _ESPREKTA_ 0 0 0 REV__ZDBF2|p.E104K|1|0.23|ENSG00000204186|chr2:206304838-206304838|G/A|missense_variant REV__ZDBF2|p.E104K|1|0.23|ENSG00000204186|chr2:206304838-206304838|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24102783203125 2 459.237981 916.461409 0.30207 0.00013872 0.2235 0.00010264 0.52558 0.00024137 459.2380107490867 26.318 1.5819 26.318 25.358 26.939 0 126 45 4 0 0 0 0.74398 1 4482 4482 7.9102 0 1 19396000 + 13743 25557 8878 8881 13865 13865 -0.00016280004615509824 ESPRIWWWLY 10 Unmodified _ESPRIWWWLY_ 0 0 0 ENST00000467160.1_1_19:19757012-19757291:-|nuORF ENST00000467160.1_1_19:19757012-19757291:-|nuORF ENST00000467160.1_1_19:19757012-19757291:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73272705078125 3 479.243429 1434.70846 -0.21643 -0.00010372 2.4847 0.0011908 2.2683 0.0010871 479.5783863297297 104.94 0.21252 100.72 100.58 100.79 -4.2183 9 5 2 0 0 0 1.1291 1 20657 20657 0.13989 0.10848 1 1075500 13744 10144 8879 8882 13866 13866 0.008490542141316837 ESPRKAATG 9 Unmodified _ESPRKAATG_ 0 0 0 ENSG00000165912|ENST00000298838|PACSIN3 ENSG00000165912|ENST00000298838|PACSIN3 ENSG00000165912|ENST00000298838|PACSIN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2196350097656 2 458.745973 915.477394 -0.076619 -3.5149E-05 0.94135 0.00043184 0.86473 0.00039669 458.74631842641935 25.789 0.4828 23.866 23.604 24.086 -1.9222 19 13 2 0 0 0 0.74858 1 4225 4225 17.113 0 1 1017100 13745 5674 8880 8883 13867 13867 0.016274262322781397 ESPSPRQP 8 Unmodified _ESPSPRQP_ 0 0 0 REV__ENST00000580029.1_1_17:37790107-37792115:+|nuORF REV__ENST00000580029.1_1_17:37790107-37792115:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.1343994140625 2 449.224874 896.435195 0.15381 6.9096E-05 -0.16904 -7.5938E-05 -0.015229 -6.8414E-06 449.22476224217183 17.014 0.97738 17.014 16.647 17.625 0 63 27 4 0 0 0 1.0254 1 2610 2610 0.6015 0 1 10715000 + 13746 16088 8881 8884 13868 13868 -0.017165491760920304 ESPSRKYP 8 Unmodified _ESPSRKYP_ 0 0 0 REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77099609375 2 482.248349 962.482145 -0.646 -0.00031153 0.65823 0.00031743 0.012224 5.8951E-06 482.2486599640695 22.403 1.3362 20.614 20.222 21.558 -1.7886 68 38 2 0 0 0 0.93477 1 3629 3629 18.135 2.2878 1 1949400 + 13747 14948 8882 8885 13869 13869 -0.0005968962494762309 ESPTSPTET 9 Unmodified _ESPTSPTET_ 0 0 0 nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1589660644531 3 316.810067 947.408371 -0.20781 -6.5835E-05 -0.3272 -0.00010366 -0.535 -0.00016949 316.8100780492736 99.725 0.73011 99.725 99.338 100.07 0 25 20 2 0 0 0 0.78323 1 19559 19559 2.4985 0 1 1475700 13748 12543 8883 8886 13870 13870 -0.06743702577944077 ESPTSPTET 9 Unmodified _ESPTSPTET_ 0 0 0 nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 316.810067 947.408371 0.18901 5.9881E-05 -0.36881 -0.00011684 -0.1798 -5.6963E-05 316.81005045482226 104.12 0.66169 99.774 99.483 100.14 -4.346 0.028658 -2.0338E-05 NaN 2.4985 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 935530 13749 12543 8883 8886 -0.06743702577944077 ESPTSPTET 9 Unmodified _ESPTSPTET_ 0 0 0 nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 316.810067 947.408371 -0.022643 -7.1734E-06 -0.33146 -0.00010501 -0.35411 -0.00011218 316.81007488225976 103.79 0.67274 99.736 99.489 100.16 -4.0543 -0.0088181 1.516E-05 NaN 2.4985 29 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1309800 13750 12543 8883 8886 -0.06743702577944077 ESPVFQPGT 9 Unmodified _ESPVFQPGT_ 0 0 0 REV__ENST00000342584.3_1_5:471473-471785:-|nuORF REV__ENST00000342584.3_1_5:471473-471785:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2355651855469 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 20.413 1 19.016 18.516 19.516 -1.3966 0 0 0 0.23508 1 3412 3412 7.9102 0 1 + 13751 20723 8884 8887 13871 13871 -0.026547982361194045 ESPVGQLSI 9 Unmodified _ESPVGQLSI_ 0 0 0 REV__ENST00000452760.2_1_17:20516367-20517318:+|nuORF REV__ENST00000452760.2_1_17:20516367-20517318:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2488098144531 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 135.96 1 131.32 130.82 131.82 -4.6399 0 0 0 0.22621 1 26822 26822 15.847 1.2655 1 + 13752 21822 8885 8888 13872 13872 0.01945774797957256 ESPYKMGK 8 Unmodified _ESPYKMGK_ 0 0 0 ENSG00000101074|ENST00000217043|R3HDML ENSG00000101074|ENST00000217043|R3HDML ENSG00000101074|ENST00000217043|R3HDML MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1474304199219 3 313.824994 938.453153 -0.79206 -0.00024857 -1.1756 -0.00036894 -1.9677 -0.00061751 313.8238567003924 60.663 0.14111 60.663 60.591 60.732 0 5 3 2 0 0 0 0.81659 1 11632 11632 3.5965 0 1 191350 13753 2033 8886 8889 13873 13873 -0.01853550245596125 ESQAQEPGVAA 11 Unmodified _ESQAQEPGVAA_ 0 0 0 nc|ENSG00000053108|Q6MZW2-2|FSTL4;FSTL4|p.G790Vfs*6|1|0.38|ENSG00000053108|chr5:133199255-133199255|C/-|frameshift_variant;ENSG00000053108|ENST00000265342|FSTL4;ENST00000509525.5_1_5:132556617-132561512:-|nuORF;nc|ENSG00000053108|Q6MZW2-3|FSTL4 nc|ENSG00000053108|Q6MZW2-2|FSTL4 nc|ENSG00000053108|Q6MZW2-2|FSTL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.785400390625 2 543.756735 1085.49892 NaN NaN NaN NaN NaN NaN NaN 59.092 1 59.092 58.592 59.592 0 0 0 0 0.22632 1 11319 11319 0.2986 0 1 13754 1254 8887 8890 13874 13874 -0.04041233529665078 ESQFRVLPRL 10 Unmodified _ESQFRVLPRL_ 0 0 0 PCLO|p.I247Lfs*42|1|0.14|ENSG00000186472|chr7:83155902-83155902|T/-|frameshift_variant PCLO|p.I247Lfs*42|1|0.14|ENSG00000186472|chr7:83155902-83155902|T/-|frameshift_variant PCLO|p.I247Lfs*42|1|0.14|ENSG00000186472|chr7:83155902-83155902|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7783813476562 2 622.859129 1243.70371 NaN NaN NaN NaN NaN NaN NaN 64.222 1 60.806 60.306 61.306 -3.4158 0 0 0 0.22588 1 12012 12012 6.2058 0.9089 1 13755 12761 8888 8891 13875 13875 0.09160170071368157 ESQILAPGT 9 Unmodified _ESQILAPGT_ 0 0 0 ENST00000506111.1_1_4:38777667-38777802:-|nuORF ENST00000506111.1_1_4:38777667-38777802:-|nuORF ENST00000506111.1_1_4:38777667-38777802:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2441101074219 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 19.118 1 17.793 17.293 18.293 -1.3251 0 0 0 0.23508 1 2897 2897 6.7232 0.51738 1 13756 10679 8889 8892 13876 13876 0.010254882809135779 ESQKDLEI 8 Unmodified _ESQKDLEI_ 0 0 0 GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant;GOLGB1|p.K2450Rfs*27|1|0.37|ENSG00000173230|chr3:121692000-121692000|T/-|frameshift_variant;GOLGB1|p.D2495Tfs*21|1|0.22|ENSG00000173230|chr3:121691867-121691867|T/-|frameshift_variant;nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2451171875 2 481.245472 960.476391 0.065745 3.1639E-05 -0.18938 -9.1138E-05 -0.12364 -5.9499E-05 481.2453850569214 99.907 1.1514 95.774 95.302 96.454 -4.1328 125 32 6 0 0 0 0.58432 1 19743 19743 23.148 0 1 234470000 13757 6280 8890 8893 13877 13877 -0.0054283292729451205 ESQKDLEI 8 Unmodified _ESQKDLEI_ 0 0 0 GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant;GOLGB1|p.K2450Rfs*27|1|0.37|ENSG00000173230|chr3:121692000-121692000|T/-|frameshift_variant;GOLGB1|p.D2495Tfs*21|1|0.22|ENSG00000173230|chr3:121691867-121691867|T/-|frameshift_variant;nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7815246582031 2 481.245472 960.476391 0.19881 9.5676E-05 -0.36213 -0.00017427 -0.16332 -7.8598E-05 481.2452666262255 99.809 1.515 95.819 95.377 96.892 -3.9895 145 43 5 0 0 0 8448 1 19335 19335 6.3914 3.7484 1 182930000 13758 6280 8890 8893 13878 13878 -0.0054283292729451205 ESQLACCDMVY 11 Unmodified _ESQLACCDMVY_ 0 0 0 BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant;BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7720336914062 2 631.248517 1260.48248 NaN NaN NaN NaN NaN NaN NaN 107.45 1 103.31 102.81 103.81 -4.135 0 0 0 0.22632 1 20666 20666 0.172 0.12821 1 13759 341 8891 8894 13879 13879 -0.13734142073940347 ESQLEALAT 9 Unmodified _ESQLEALAT_ 0 0 0 CEP250|p.A1168T|1|0.34|ENSG00000126001|chr20:35497914-35497914|G/A|missense_variant CEP250|p.A1168T|1|0.34|ENSG00000126001|chr20:35497914-35497914|G/A|missense_variant CEP250|p.A1168T|1|0.34|ENSG00000126001|chr20:35497914-35497914|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2454528808594 2 481.245472 960.476391 0.052431 2.5232E-05 -0.11694 -5.6277E-05 -0.064509 -3.1045E-05 481.24537947024936 84.781 0.80302 84.781 84.449 85.252 0 40 22 2 0 0 0 0.15889 1 16495 16495 4.7159 0 1 6276600 13760 492 8892 8895 13880 13880 -0.0054283292729451205 ESQLQPNL 8 Unmodified _ESQLQPNL_ 0 0 0 REV__nc|ENSG00000146192|Q7Z6J4-2|FGD2 REV__nc|ENSG00000146192|Q7Z6J4-2|FGD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24261474609375 2 464.740357 927.46616 0.17987 8.3595E-05 1.2279 0.00057064 1.4077 0.00065423 464.7410953798953 24.495 0.4476 24.495 24.267 24.715 0 17 12 2 0 0 0 0.51112 1 4227 4227 34.102 1.797 1 936000 + 13761 22266 8893 8896 13881 13881 -0.0004739586186133238 ESQNSAQLTHE 11 Unmodified _ESQNSAQLTHE_ 0 0 0 REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7811279296875 2 622.281106 1242.54766 0.61164 0.00038061 -0.193 -0.0001201 0.41864 0.00026051 622.2811741564974 33.194 0.40762 30.978 30.84 31.248 -2.2158 18 11 2 0 0 0 0.72351 1 5811 5811 10.151 0 1 487220 + 13762 13202 8894 8897 13882 13882 -0.06391364960586543 ESQPKVKEV 9 Unmodified _ESQPKVKEV_ 0 0 0 REV__GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant REV__GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2825317382812 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 49.856 1 46.975 46.475 47.475 -2.8811 0 0 0 0.23508 1 9449 9449 10.074 0 1 + 13763 15485 8895 8898 13883 13883 0.04629421752088092 ESQPPPPAP 9 Unmodified _ESQPPPPAP_ 0 0 0 ENST00000392701.7_1_2:166650587-166650761:-|nuORF ENST00000392701.7_1_2:166650587-166650761:-|nuORF ENST00000392701.7_1_2:166650587-166650761:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2298278808594 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 95.636 1 91.586 91.086 92.086 -4.0496 0 0 0 0.23508 1 18748 18748 11.64 0 1 13764 9381 8896 8899 13884 13884 -0.017787808905723068 ESQQRLEA 8 Unmodified _ESQQRLEA_ 0 0 0 REV__ZNF804B|p.P1231Tfs*23|1|0.28|ENSG00000182348|chr7:89336665-89336666|-/TCACC|frameshift_variant REV__ZNF804B|p.P1231Tfs*23|1|0.28|ENSG00000182348|chr7:89336665-89336666|-/TCACC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2333068847656 2 480.740888 959.467223 -0.33661 -0.00016182 0.38064 0.00018299 0.044031 2.1167E-05 480.74105285862623 24.341 1.0655 22.488 22.191 23.256 -1.8534 65 30 4 0 0 0 0.67861 1 4012 4012 17.113 1.8644 1 25489000 + 13765 18778 8897 8900 13885 13885 -0.01413181492955573 ESQTQTELDE 10 Unmodified _ESQTQTELDE_ 0 0 0 REV__ENST00000446198.5_1_7:131189072-131193853:-|nuORF REV__ENST00000446198.5_1_7:131189072-131193853:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2547607421875 2 590.254222 1178.49389 NaN NaN NaN NaN NaN NaN NaN 63.463 1 60.466 59.966 60.966 -2.9975 0 0 0 0.22588 1 12263 12263 9.3831 0 1 + 13766 15924 8898 8901 13886 13886 -0.08821582182940801 ESQTVVVPA 9 Unmodified _ESQTVVVPA_ 0 0 0 REV__ENST00000503652.1_1_5:75377826-75377994:-|nuORF REV__ENST00000503652.1_1_5:75377826-75377994:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2404479980469 2 465.250557 928.486562 0.15128 7.0383E-05 -0.24554 -0.00011424 -0.094264 -4.3856E-05 465.2504925341325 31.323 0.56074 31.323 31.04 31.6 0 22 15 2 0 0 0 0.60061 1 5602 5602 13.042 2.9685 1 851050 + 13767 22453 8899 8902 13887 13887 0.01945774797957256 ESQVPKPPP 9 Unmodified _ESQVPKPPP_ 0 0 0 nc|ENSG00000163362|Q3KP66|INAVA;ENSG00000163362|ENST00000413687|INAVA nc|ENSG00000163362|Q3KP66|INAVA nc|ENSG00000163362|Q3KP66|INAVA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2641296386719 2 489.766374 977.518196 0.0039327 1.9261E-06 -1.6943 -0.00082983 -1.6904 -0.0008279 489.7662256125348 57.56 0.94765 54.666 54.166 55.114 -2.8944 34 26 2 0 0 0 0.60061 1 11109 11109 13.042 0 1 623060 13768 12416 8900 8903 13888 13888 0.028537675519032746 ESQVVASVLGP 11 Unmodified _ESQVVASVLGP_ 0 0 0 REV__ENST00000256497.8_1_3:5260675-5260837:+|nuORF REV__ENST00000256497.8_1_3:5260675-5260837:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7755126953125 2 543.295496 1084.57644 0.0090032 4.8914E-06 1.268 0.0006889 1.277 0.00069379 543.2961935153177 40.364 0.35271 37.824 37.498 37.85 -2.5398 14 9 2 0 0 0 0.74417 1 7165 7165 8.7454 1.4562 1 1994800 + 13769 20133 8901 8904 13889 13889 0.03753404406529626 ESRAGTPSL 9 Unmodified _ESRAGTPSL_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23492431640625 2 459.237981 916.461409 0.27215 0.00012498 0.22147 0.00010171 0.49362 0.00022669 459.238045444905 28.184 1.3673 26.188 25.396 26.763 -1.9962 128 38 4 0 0 0 0.68435 1 4578 4578 7.2892 0 1 18028000 13770 5009 8902 8905 13890 13890 -0.0001628000460414114 ESRCFTLDHH 10 Unmodified _ESRCFTLDHH_ 0 0 0 REV__ENST00000264033.5_1_11:119149415-119156175:+|nuORF REV__ENST00000264033.5_1_11:119149415-119156175:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.775634765625 2 622.777479 1243.5404 NaN NaN NaN NaN NaN NaN NaN 36.279 1 33.885 33.385 34.385 -2.3938 0 0 0 0.22588 1 6698 6698 6.2058 0 1 + 13771 20224 8903 8906 13891 13891 -0.07162376041969765 ESRCKLRLH 9 Unmodified _ESRCKLRLH_ 0 0 0 REV__ENST00000600284.5_1_19:50490096-50500767:-|nuORF REV__ENST00000600284.5_1_19:50490096-50500767:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2140197753906 3 381.213475 1140.6186 NaN NaN NaN NaN NaN NaN NaN 31.369 1 29.138 28.638 29.638 -2.2305 0 0 0 0.23508 1 5691 5691 2.7352 0 1 + 13772 23409 8904 8907 13892 13892 0.053911013339075 ESRCYGNGA 9 Unmodified _ESRCYGNGA_ 0 0 0 REV__ENSG00000169710|ENST00000306749|FASN REV__ENSG00000169710|ENST00000306749|FASN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.725341796875 2 478.698166 955.381779 -0.24787 -0.00011866 -0.24195 -0.00011582 -0.48982 -0.00023448 478.697970411701 56.501 0.94447 56.501 55.938 56.882 0 38 26 2 0 0 0 0.5059 1 10780 10780 19.257 1.122 1 1593200 + 13773 18116 8905 8908 13893 13893 -0.0976966995026487 ESRCYGNGA 9 Unmodified _ESRCYGNGA_ 0 0 0 REV__ENSG00000169710|ENST00000306749|FASN REV__ENSG00000169710|ENST00000306749|FASN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.698166 955.381779 0.12249 5.8635E-05 -0.66684 -0.00031921 -0.54435 -0.00026058 478.6977324195446 59.565 0.94026 56.341 55.912 56.852 -3.2237 0.041928 -0.00032625 NaN 19.257 42 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1548200 + 13774 18116 8905 8908 -0.0976966995026487 ESRGPLRQ 8 Unmodified _ESRGPLRQ_ 0 0 0 REV__ENST00000428962.2_1_1:155168428-155169890:-|nuORF REV__ENST00000428962.2_1_1:155168428-155169890:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.0353698730469 3 314.842036 941.504277 -0.54382 -0.00017122 0.52321 0.00016473 -0.020608 -6.4883E-06 314.8421767917674 17.979 0.49853 17.979 17.803 18.302 0 34 13 4 0 0 0 1.0256 1 2847 2847 0.26902 0 1 8763500 + 13775 21596 8906 8909 13894 13894 0.031185348434860316 ESRGVAEPA 9 Unmodified _ESRGVAEPA_ 0 0 0 ENST00000424310.6_2_5:158636239-158636365:-|nuORF ENST00000424310.6_2_5:158636239-158636365:-|nuORF ENST00000424310.6_2_5:158636239-158636365:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2243347167969 2 458.230156 914.445759 0.51651 0.00023668 -0.33757 -0.00015469 0.17894 8.1996E-05 458.2299994951408 29.757 0.48799 27.683 27.413 27.901 -2.0743 33 13 4 0 0 0 0.66316 1 5031 5031 8.7454 0.83525 1 4395500 13776 9701 8907 8910 13895 13895 -0.014885665216752386 ESRIHVRF 8 Unmodified _ESRIHVRF_ 0 0 0 REV__DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant REV__DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2811889648438 2 522.290882 1042.56721 NaN NaN NaN NaN NaN NaN NaN 178.89 1 173.98 173.48 174.48 -4.9088 0 0 0 0.21486 1 35690 35690 2.8892 0.58649 1 + 13777 13679 8908 8911 13896 13896 0.047631006314986735 ESRKQEEIIA 10 Unmodified _ESRKQEEIIA_ 0 0 0 REV__nc|ENSG00000123106|Q7Z6B0-3|CCDC91 REV__nc|ENSG00000123106|Q7Z6B0-3|CCDC91 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2823486328125 2 601.822409 1201.63027 NaN NaN NaN NaN NaN NaN NaN 99.495 1 99.495 98.995 99.995 0 0 0 0 0.22588 1 19511 19511 8.7454 0.58988 1 + 13778 15717 8909 8912 13897 13897 0.03751576838249093 ESRKRTFY 8 Unmodified _ESRKRTFY_ 0 0 0 ENST00000377047.8_1_13:95056729-95057002:+|nuORF ENST00000377047.8_1_13:95056729-95057002:+|nuORF ENST00000377047.8_1_13:95056729-95057002:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7763061523438 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 29.284 1 27.328 26.828 27.828 -1.9561 0 0 0 0.23366 1 5262 5262 0.12286 0.049601 1 13779 9260 8910 8913 13898 13898 0.022433770490579263 ESRKRTFY 8 Unmodified _ESRKRTFY_ 0 0 0 ENST00000377047.8_1_13:95056729-95057002:+|nuORF ENST00000377047.8_1_13:95056729-95057002:+|nuORF ENST00000377047.8_1_13:95056729-95057002:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7874755859375 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 85.399 1 81.49 80.99 81.99 -3.9093 0 0 0 0.21486 1 16240 16240 10.183 0 1 13780 9260 8910 8913 13899 13899 0.022433770490579263 ESRPAQKHK 9 Unmodified _ESRPAQKHK_ 0 0 0 ENST00000462195.6_1_X:1550825-1551116:-|nuORF ENST00000462195.6_1_X:1550825-1551116:-|nuORF ENST00000462195.6_1_X:1550825-1551116:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2725830078125 2 540.799072 1079.58359 NaN NaN NaN NaN NaN NaN NaN 60.518 1 57.584 57.084 58.084 -2.9333 0 0 0 0.23508 1 11646 11646 7.2892 1.0834 1 13781 10082 8911 8914 13900 13900 0.046981817976075035 ESRPMRGF 8 Unmodified _ESRPMRGF_ 0 0 0 REV__PPARA|p.I195Rfs*4|1|0.26|ENSG00000186951|chr22:46219886-46219887|AT/-|frameshift_variant REV__PPARA|p.I195Rfs*4|1|0.26|ENSG00000186951|chr22:46219886-46219887|AT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.254638671875 2 490.242544 978.470534 0.14331 7.0258E-05 -0.71116 -0.00034864 -0.56785 -0.00027838 490.2423281642785 33.979 0.45658 31.763 31.458 31.915 -2.2158 15 12 2 0 0 0 0.9455 1 5889 5889 11.64 9.3376 1 432650 + 13782 19066 8912 8915 13901 13901 -0.01956209919922003 ESRRPVHY 8 Unmodified _ESRRPVHY_ 0 0 0 REV__ENSG00000145113|ENST00000463781|MUC4 REV__ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2723999023438 2 522.27269 1042.53083 -0.72044 -0.00037627 0.60555 0.00031626 -0.11489 -6.0005E-05 522.2728720367923 45.868 0.79296 43.002 42.657 43.45 -2.8653 36 22 2 0 0 0 0.71273 1 8389 8389 12.532 1.7076 1 1896800 + 13783 16822 8913 8916 13902 13902 0.01126223734809173 ESRSRQFRPDT 11 Unmodified _ESRSRQFRPDT_ 0 0 0 REV__ENSG00000135540|ENST00000343505|NHSL1 REV__ENSG00000135540|ENST00000343505|NHSL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2319641113281 3 460.232251 1377.67492 NaN NaN NaN NaN NaN NaN NaN 131.84 1 127.05 126.55 127.55 -4.799 0 0 0 0.22632 1 25381 25381 0.026206 0 1 + 13784 16276 8914 8917 13903 13903 0.0011940070428408944 ESRVSEIH 8 Unmodified _ESRVSEIH_ 0 0 0 nc|ENSG00000145819|Q9UNA1|ARHGAP26;ENSG00000145819|ENST00000645722|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74188232421875 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 22.931 1 21.477 20.977 21.977 -1.4535 0 0 0 0.21404 1 3676 3676 13.906 0.39817 1 13785 12368 8915 8918 13904 13904 -0.007208776303286868 ESRWPLGA 8 Unmodified _ESRWPLGA_ 0 0 0 REV__FAM78A|p.F5Sfs*36|1|0.35|ENSG00000126882|chr9:131276166-131276166|A/-|frameshift_variant REV__FAM78A|p.F5Sfs*36|1|0.35|ENSG00000126882|chr9:131276166-131276166|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2389221191406 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 63.06 1 59.803 59.303 60.303 -3.2567 0 0 0 0.21486 1 11831 11831 5.7604 0.52976 1 + 13786 23519 8916 8919 13905 13905 0.00036345066178000707 ESRYLAQI 8 Unmodified _ESRYLAQI_ 0 0 0 VCAM1|p.V398Efs*10|1|0.1|ENSG00000162692|chr1:100729370-100729371|-/AGAAAGA|frameshift_variant;VCAM1|p.L453Ffs*23|1|0.35|ENSG00000162692|chr1:100731346-100731347|-/T|frameshift_variant;nc|ENSG00000162692|P19320-2|VCAM1;nc|ENSG00000162692|P19320-3|VCAM1;ENSG00000162692|ENST00000294728|VCAM1 VCAM1|p.V398Efs*10|1|0.1|ENSG00000162692|chr1:100729370-100729371|-/AGAAAGA|frameshift_variant VCAM1|p.V398Efs*10|1|0.1|ENSG00000162692|chr1:100729370-100729371|-/AGAAAGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26531982421875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 81.953 1 78.114 77.614 78.614 -3.8392 0 0 0 0.22681 1 15564 15564 8.966 0 1 13787 5354 8917 8920 13906 13906 0.023328834091330464 ESSAHNDCPS 10 Unmodified _ESSAHNDCPS_ 0 0 0 REV__nc|ENSG00000164086|Q16829-2|DUSP7 REV__nc|ENSG00000164086|Q16829-2|DUSP7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6951293945312 2 523.69582 1045.37709 NaN NaN NaN NaN NaN NaN NaN 74.031 1 74.031 73.531 74.531 0 0 0 0 2.8426 1 14368 14368 0.063865 0.034582 1 + 13788 17648 8918 8921 13907 13907 -0.14378598883695304 ESSAKTQVCI 10 Unmodified _ESSAKTQVCI_ 0 0 0 nc|ENSG00000180777|Q9BXX2-2|ANKRD30B;ANKRD30B|p.D965Ifs*30|3|0.08|ENSG00000180777|chr18:14848778-14848778|A/-|frameshift_variant;ANKRD30B|p.S1062Vfs*2|1|0.33|ENSG00000180777|chr18:14850356-14850356|A/-|frameshift_variant;nc|ENSG00000180777|Q9BXX2|ANKRD30B;ENSG00000180777|ENST00000690538|ANKRD30B nc|ENSG00000180777|Q9BXX2-2|ANKRD30B nc|ENSG00000180777|Q9BXX2-2|ANKRD30B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2645874023438 2 533.265881 1064.51721 NaN NaN NaN NaN NaN NaN NaN 32.81 1 32.81 32.31 33.31 0 0 0 0 0.22588 1 5972 5972 11.495 2.1116 1 13789 161 8919 8922 13908 13908 -0.01246814879300473 ESSAQLWV 8 Unmodified _ESSAQLWV_ 0 0 0 ENST00000493195.5_1_1:159902482-159902782:-|nuORF ENST00000493195.5_1_1:159902482-159902782:-|nuORF ENST00000493195.5_1_1:159902482-159902782:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2281799316406 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 22.69 1 20.901 20.401 21.401 -1.7886 0 0 0 0.21486 1 3615 3615 9.3474 0 1 13790 10542 8920 8923 13909 13909 -0.017787808905723068 ESSASLLSY 9 Unmodified _ESSASLLSY_ 0 0 0 REV__ENSG00000179094|ENST00000317276|PER1 REV__ENSG00000179094|ENST00000317276|PER1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7326354980469 2 478.732197 955.449842 0.31079 0.00014878 0.81646 0.00039086 1.1272 0.00053965 478.73248728489995 100.84 0.91315 100.84 100.2 101.12 0 33 25 2 0 0 0 0.11968 1 19766 19766 11.749 7.2722 1 1503000 + 13791 18638 8921 8924 13910 13910 -0.029665218186096354 ESSEYQSY 8 Unmodified _ESSEYQSY_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 497.25018310546875 2 496.695812 991.377071 -0.02918 -1.4494E-05 -0.015314 -7.6063E-06 -0.044494 -2.21E-05 496.6957620663146 43.719 1.3004 40.929 40.411 41.711 -2.79 81 36 3 0 0 0 0.89386 1 8347 8347 1.7423 1.334 1 4506300 13792 6230 8922 8925 13911 13911 -0.11896275612036789 ESSEYQSY 8 Unmodified _ESSEYQSY_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 496.695812 991.377071 -0.11376 -5.6503E-05 0.099002 4.9174E-05 -0.014757 -7.3296E-06 496.6957777542541 43.795 1.4022 41.029 40.502 41.905 -2.7661 0.015538 3.9643E-05 NaN 1.7423 82 39 3 NaN NaN NaN NaN 0 NaN NaN 0 3839000 13793 6230 8922 8925 -0.11896275612036789 ESSEYQSY 8 Unmodified _ESSEYQSY_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 496.695812 991.377071 -0.23816 -0.00011829 0.083879 4.1662E-05 -0.15428 -7.6631E-05 496.69573653276524 43.829 1.2571 41.082 40.452 41.709 -2.7475 0.068569 2.462E-05 NaN 1.7423 79 35 3 NaN NaN NaN NaN 0 NaN NaN 0 2270600 13794 6230 8922 8925 -0.11896275612036789 ESSGFPSRL 9 Unmodified _ESSGFPSRL_ 0 0 0 ENSG00000179148|ENST00000448843|ALOXE3;nc|ENSG00000179148|Q9BYJ1-2|ALOXE3 ENSG00000179148|ENST00000448843|ALOXE3 ENSG00000179148|ENST00000448843|ALOXE3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2658386230469 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 58.377 1 58.377 57.877 58.877 0 0 0 0 0.20155 1 11170 11170 23.148 0 1 13795 6615 8923 8926 13912 13912 -0.013039934875678227 ESSHDSDHSDE 11 Unmodified _ESSHDSDHSDE_ 0 0 0 REV__ENSG00000106511|ENST00000262041|MEOX2 REV__ENSG00000106511|ENST00000262041|MEOX2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.76318359375 2 622.718535 1243.42252 NaN NaN NaN NaN NaN NaN NaN 124.03 1 124.03 123.53 124.53 0 0 0 0 0.2367 1 24451 24451 2.9952 0.93549 1 + 13796 15054 8924 8927 13913 13913 -0.189457018875828 ESSINIVAF 9 Unmodified _ESSINIVAF_ 0 0 0 REV__TEK|p.N809Tfs*21|1|0.22|ENSG00000120156|chr9:27206639-27206639|A/-|frameshift_variant REV__TEK|p.N809Tfs*21|1|0.22|ENSG00000120156|chr9:27206639-27206639|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.275146484375 2 490.258382 978.502212 0.27368 0.00013417 0.07489 3.6715E-05 0.34857 0.00017089 490.2583250824102 84.674 0.86313 80.764 80.353 81.217 -3.9093 71 24 4 0 0 0 0.48644 1 16186 16186 20.454 0 1 14726000 + 13797 15612 8925 8928 13914 13914 0.012100613149982564 ESSINYTF 8 Unmodified _ESSINYTF_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1 ENSG00000153201|ENST00000283195|RANBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25469970703125 2 480.71909 959.423627 0.238 0.00011441 -0.17342 -8.3368E-05 0.06458 3.1045E-05 480.71899125825286 98.957 0.66769 94.688 94.367 95.034 -4.2692 33 18 2 0 0 0 0.66066 1 18879 18879 36.044 12.896 1 4270600 13798 4961;4959;1113;6979 8926 8929 13915 13915 -0.057707909900841514 ESSINYTF 8 Unmodified _ESSINYTF_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1 ENSG00000153201|ENST00000283195|RANBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25457763671875 2 480.71909 959.423627 0.082241 3.9535E-05 0.061497 2.9563E-05 0.14374 6.9097E-05 480.7190007918791 98.645 0.7374 94.688 94.299 95.037 -3.9564 43 21 3 0 0 0 0.66066 1 18877 18877 28.487 3.813 1 5664600 13799 4961;4959;1113;6979 8926 8929 13916 13916 -0.057707909900841514 ESSIVIGEK 9 Unmodified _ESSIVIGEK_ 0 0 0 ENSG00000118507|ENST00000431975|AKAP7 ENSG00000118507|ENST00000431975|AKAP7 ENSG00000118507|ENST00000431975|AKAP7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23944091796875 2 481.263665 960.512776 -0.0090808 -4.3702E-06 0.070022 3.3699E-05 0.060941 2.9329E-05 481.2635604250816 91.113 0.68057 87.253 86.929 87.61 -3.8595 40 19 3 0 0 0 0.19311 1 17780 17780 37.974 7.3375 1 3245800 13800 3040 8927 8930 13917 13917 0.03094043969440463 ESSKGQAEA 9 Unmodified _ESSKGQAEA_ 0 0 0 REV__ENSG00000132356|ENST00000397128|PRKAA1 REV__ENSG00000132356|ENST00000397128|PRKAA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75799560546875 2 453.711796 905.40904 -0.06708 -3.0435E-05 -0.86359 -0.00039182 -0.93067 -0.00042226 453.7111776347574 97.417 0.73018 93.319 93.012 93.742 -4.0978 27 20 2 0 0 0 0.42844 1 19095 19095 24.021 1.2843 1 1399100 + 13801 16109 8928 8931 13918 13918 -0.047448631382394524 ESSKGQAEA 9 Unmodified _ESSKGQAEA_ 0 0 0 REV__ENSG00000132356|ENST00000397128|PRKAA1 REV__ENSG00000132356|ENST00000397128|PRKAA1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 453.711796 905.40904 0.018885 8.5683E-06 -1.1486 -0.00052113 -1.1297 -0.00051256 453.71110822333 93.22 0.79988 93.22 92.959 93.759 0 -0.099918 -1.7126E-05 NaN 24.021 28 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1682800 + 13802 16109 8928 8931 -0.047448631382394524 ESSKGQAEA 9 Unmodified _ESSKGQAEA_ 0 0 0 REV__ENSG00000132356|ENST00000397128|PRKAA1 REV__ENSG00000132356|ENST00000397128|PRKAA1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.711796 905.40904 -0.036675 -1.664E-05 -1.4175 -0.00064314 -1.4542 -0.00065978 453.7110408632309 97.341 0.66035 93.421 93.126 93.786 -3.9194 0.10097 -0.00026115 NaN 24.021 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2517200 + 13803 16109 8928 8931 -0.047448631382394524 ESSKLLSY 8 Unmodified _ESSKLLSY_ 0 0 0 REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4 REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2496643066406 2 463.745108 925.475663 0.072031 3.3404E-05 0.064231 2.9787E-05 0.13626 6.3191E-05 463.74505306808356 58.025 1.0852 54.82 54.179 55.264 -3.2052 92 30 4 0 0 0 8448 1 10796 10796 4.2837 0.6966 1 18564000 + 13804 19894 8929 8932 13919 13919 0.009943724236677554 ESSLHLQPS 9 Unmodified _ESSLHLQPS_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.99444580078125 3 333.169818 996.487624 -0.41695 -0.00013891 0.18319 6.1035E-05 -0.23375 -7.7879E-05 333.1698133143797 17.801 0.82308 16.529 16.041 16.864 -1.2722 53 23 3 0 0 0 0.8799 1 2620 2620 0.96228 0 1 1043600 + 13805 15935 8930 8933 13920 13920 -0.010760108331282936 ESSLHLQPS 9 Unmodified _ESSLHLQPS_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 333.169818 996.487624 -0.49947 -0.00016641 0.5263 0.00017535 0.026833 8.9399E-06 333.1699331831902 16.647 0.86507 16.647 16.129 16.994 0 0.062352 0.00016548 NaN 0.96228 69 24 4 NaN NaN NaN NaN 0 NaN NaN 0 2292700 + 13806 15935 8930 8933 -0.010760108331282936 ESSLHLQPS 9 Unmodified _ESSLHLQPS_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 333.169818 996.487624 -0.43716 -0.00014565 0.35171 0.00011718 -0.085456 -2.8471E-05 333.1698784318227 17.89 0.87226 16.579 16.03 16.902 -1.3109 -0.0061774 -9.0306E-06 NaN 0.96228 61 24 3 NaN NaN NaN NaN 0 NaN NaN 0 1361900 + 13807 15935 8930 8933 -0.010760108331282936 ESSLPPSAK 9 Unmodified _ESSLPPSAK_ 0 0 0 SLX4IP|p.V243Lfs*21|1|0.2|ENSG00000149346|chr20:10622874-10622874|A/-|frameshift_variant;SLX4IP|p.S328Afs*19|1|0.29|ENSG00000149346|chr20:10623129-10623129|A/-|frameshift_variant;ENSG00000149346|ENST00000334534|SLX4IP SLX4IP|p.V243Lfs*21|1|0.2|ENSG00000149346|chr20:10622874-10622874|A/-|frameshift_variant SLX4IP|p.V243Lfs*21|1|0.2|ENSG00000149346|chr20:10622874-10622874|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2408752441406 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 19.633 1 17.998 17.498 18.498 -1.6351 0 0 0 0.22251 1 2976 2976 16.942 3.4344 1 13808 4788 8931 8934 13921 13921 0.010254882809135779 ESSLQELR 8 Unmodified _ESSLQELR_ 0 0 0 REV__ENST00000380874.3_1_6:1612095-1612257:+|nuORF REV__ENST00000380874.3_1_6:1612095-1612257:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23309326171875 2 481.251089 960.487624 0.27378 0.00013176 0.027002 1.2995E-05 0.30078 0.00014475 481.2510220287192 20.102 0.24393 18.706 18.585 18.829 -1.3966 11 6 2 0 0 0 0.70613 1 3366 3366 13.508 1.8676 1 638930 + 13809 21161 8932 8935 13922 13922 0.005799891668630153 ESSLRRHHE 9 Unmodified _ESSLRRHHE_ 0 0 0 ENSG00000182378|ENST00000381657|PLCXD1 ENSG00000182378|ENST00000381657|PLCXD1 ENSG00000182378|ENST00000381657|PLCXD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3301391601562 2 575.789235 1149.56392 0.071756 4.1316E-05 2.4826 0.0014294 2.5543 0.0014708 576.2920161102986 127.66 0.10574 123.05 122.99 123.1 -4.6172 4 2 2 0 0 0 0.6329 1 25176 25176 10.824 1.4408 1 1337900 13810 6787 8933 8936 13923 13923 -0.004881942131532924 ESSLSNYAIGY 11 Unmodified _ESSLSNYAIGY_ 0 0 0 REV__nc|ENSG00000137145|Q5VZ89|DENND4C REV__nc|ENSG00000137145|Q5VZ89|DENND4C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.278076171875 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 72.743 1 69.432 68.932 69.932 -3.3107 0 0 0 0.22862 1 14176 14176 9.3831 1.473 1 + 13811 16378 8934 8937 13924 13924 -0.047637936983846885 ESSNVYRDP 9 Unmodified _ESSNVYRDP_ 0 0 0 nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF nc|ENSG00000166348|Q70EL1-7|USP54 nc|ENSG00000166348|Q70EL1-7|USP54 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2776489257812 2 533.743628 1065.4727 1.1642 0.00062136 1.3163 0.00070255 2.4804 0.0013239 533.7443780664605 25.037 0.34665 23.389 23.131 23.477 -1.6482 15 9 2 0 0 0 0.74655 1 4329 4329 6.7232 0 1 1065800 13812 5715 8935 8938 13925 13925 -0.0574150270113023 ESSPELAPPPA 11 Unmodified _ESSPELAPPPA_ 0 0 0 nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.T436Hfs*40|1|0.21|ENSG00000114867|chr3:184321883-184321884|-/C|frameshift_variant nc|ENSG00000114867|Q04637-4|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7906494140625 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 78.937 1 75.427 74.927 75.927 -3.5102 0 0 0 0.061567 1 15414 15414 41.84 3.8656 1 13813 2815 8936 8939 13926 13926 -0.013868748644881634 ESSPSTMILT 10 Unmodified _ESSPSTMILT_ 0 0 0 REV__ENST00000397722.5_1_16:450649-450715:+|nuORF REV__ENST00000397722.5_1_16:450649-450715:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2610473632812 2 533.260265 1064.50598 NaN NaN NaN NaN NaN NaN NaN 75.528 1 72.113 71.613 72.613 -3.4151 0 0 0 0.22576 1 14731 14731 14.838 2.3067 1 + 13814 21310 8937 8940 13927 13927 -0.023696369734580003 ESSPSTMILT 10 Unmodified _ESSPSTMILT_ 0 0 0 REV__ENST00000397722.5_1_16:450649-450715:+|nuORF REV__ENST00000397722.5_1_16:450649-450715:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2617797851562 2 533.260265 1064.50598 NaN NaN NaN NaN NaN NaN NaN 75.819 1 72.186 71.686 72.686 -3.6337 0 0 0 0.22544 1 14418 14418 19.257 1.122 1 + 13815 21310 8937 8940 13928 13928 -0.023696369734580003 ESSRFLLQ 8 Unmodified _ESSRFLLQ_ 0 0 0 REV__ENST00000427396.5_1_7:89891366-89906408:+|nuORF REV__ENST00000427396.5_1_7:89891366-89906408:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26483154296875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 61.501 1 58.54 58.04 59.04 -2.9614 0 0 0 0.22676 1 11858 11858 0.25148 0.18749 1 + 13816 13389 8938 8941 13929 13929 0.023328834091557837 ESSRFLLQ 8 Unmodified _ESSRFLLQ_ 0 0 0 REV__ENST00000427396.5_1_7:89891366-89906408:+|nuORF REV__ENST00000427396.5_1_7:89891366-89906408:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26507568359375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 61.796 1 58.427 57.927 58.927 -3.3694 0 0 0 0.2343 1 11524 11524 0.063987 0 1 + 13817 13389 8938 8941 13930 13930 0.023328834091557837 ESSRVDWY 8 Unmodified _ESSRVDWY_ 0 0 0 nc|ENSG00000146966|Q9ULE3-2|DENND2A;ENSG00000146966|ENST00000496613|DENND2A nc|ENSG00000146966|Q9ULE3-2|DENND2A nc|ENSG00000146966|Q9ULE3-2|DENND2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2571411132812 2 521.235439 1040.45632 0.30336 0.00015812 -0.44371 -0.00023128 -0.14036 -7.3158E-05 521.2353354402887 63.483 0.72573 60.227 59.88 60.606 -3.2567 40 20 3 0 0 0 0.76728 1 11849 11849 5.7604 5.7604 1 2514900 13818 4677 8939 8942 13931 13931 -0.062285838672323734 ESSSMDGFW 9 Unmodified _ESSSMDGFW_ 0 0 0 ENSG00000124143|ENST00000373345|ARHGAP40;ARHGAP40|p.K441Sfs*20|1|0.15|ENSG00000124143|chr20:38643815-38643815|C/-|frameshift_variant ENSG00000124143|ENST00000373345|ARHGAP40 ENSG00000124143|ENST00000373345|ARHGAP40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7014770507812 2 523.200207 1044.38586 -0.051504 -2.6947E-05 -4.3652 -0.0022839 -4.4167 -0.0023108 523.200588672442 45.866 0.55356 43 42.747 43.3 -2.8665 54 15 6 0 0 0 0.68435 1 8315 8315 7.2892 0.56607 1 5120900 13819 3292 8940 8943 13932 13932 -0.1345562524718389 ESSSYSFE 8 Unmodified _ESSSYSFE_ 0 0 0 REV__ENST00000531819.5_1_1:52231540-52246838:+|nuORF REV__ENST00000531819.5_1_1:52231540-52246838:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 468.7166748046875 2 468.18508 934.355607 0.10415 4.8762E-05 0.47871 0.00022413 0.58286 0.00027289 468.18735334630736 26.883 0.65017 26.883 26.566 27.216 0 37 18 3 0 0 0 0.87247 1 4695 4695 3.5871 1.8448 1 1354200 + 13820 15532 8941 8944 13933 13933 -0.11419660640740403 ESSTLLKPVL 10 Unmodified _ESSTLLKPVL_ 0 0 0 REV__ENSG00000059588|ENST00000040877|TARBP1 REV__ENSG00000059588|ENST00000040877|TARBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79541015625 2 543.823889 1085.63323 NaN NaN NaN NaN NaN NaN NaN 45.199 1 45.199 44.699 45.699 0 0 0 0 0.22588 1 8491 8491 6.2058 1.8765 1 + 13821 14136 8942 8945 13934 13934 0.09383451963049083 ESSVPARK 8 Unmodified _ESSVPARK_ 0 0 0 ENST00000442358.5_1_1:158102111-158102970:-|nuORF ENST00000442358.5_1_1:158102111-158102970:-|nuORF ENST00000442358.5_1_1:158102111-158102970:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23583984375 2 437.243067 872.47158 NaN NaN NaN NaN NaN NaN NaN 94.074 1 89.931 89.431 90.431 -4.1435 0 0 0 0.17894 1 17939 17939 32.117 0 1 13822 9899 8943 8946 13935 13935 0.03024327720618203 ESSVQNLGP 9 Unmodified _ESSVQNLGP_ 0 0 0 REV__nc|ENSG00000170037|Q8N137-5|CNTROB REV__nc|ENSG00000170037|Q8N137-5|CNTROB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.247802734375 2 465.729989 929.445425 0.02799 1.3036E-05 -0.065855 -3.0671E-05 -0.037865 -1.7635E-05 465.7300380810787 55.012 0.64124 55.012 54.694 55.335 0 25 17 2 0 0 0 0.54076 1 10434 10434 20.454 0 1 1069100 + 13823 24160 8944 8947 13936 13936 -0.022119862415024727 ESSVVKWPY 9 Unmodified _ESSVVKWPY_ 0 0 0 ENST00000427063.6_1_10:29710617-29711127:+|nuORF ENST00000427063.6_1_10:29710617-29711127:+|nuORF ENST00000427063.6_1_10:29710617-29711127:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.78125 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 28.122 1 28.122 27.622 28.622 0 0 0 0 0.23508 1 4982 4982 8.5933 1.304 1 13824 9737 8945 8948 13937 13937 0.0013803672338781325 ESSWSPSEA 9 Unmodified _ESSWSPSEA_ 0 0 0 ENST00000368984.7_1_10:124249131-124266321:+|nuORF ENST00000368984.7_1_10:124249131-124266321:+|nuORF ENST00000368984.7_1_10:124249131-124266321:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2585754394531 2 490.203804 978.393055 NaN NaN NaN NaN NaN NaN NaN 134.75 1 134.75 134.25 135.25 0 0 0 0 0.23508 1 26678 26678 7.9102 0.62092 1 13825 9105 8946 8949 13938 13938 -0.09700569375127088 ESSYSCED 8 Unmodified _ESSYSCED_ 0 0 0 nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4;nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4 nc|ENSG00000136111|O60343-2|TBC1D4 nc|ENSG00000136111|O60343-2|TBC1D4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.241943359375 2 460.152923 918.291292 NaN NaN NaN NaN NaN NaN NaN 108.8 1 104.35 103.85 104.85 -4.4518 0 0 0 0.2343 1 20881 20881 0.12286 0.11459 1 13826 3983 8947 8950 13939 13939 -0.17112183789208757 ESTATRPGP 9 Unmodified _ESTATRPGP_ 0 0 0 ENST00000467609.5_1_17:19582001-19584787:-|nuORF;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2 ENST00000467609.5_1_17:19582001-19584787:-|nuORF ENST00000467609.5_1_17:19582001-19584787:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2299499511719 2 458.230156 914.445759 -0.052774 -2.4183E-05 0.29113 0.00013341 0.23836 0.00010922 458.2301901451368 18.961 0.40786 17.65 17.454 17.862 -1.3109 16 11 2 0 0 0 0.57596 1 3091 3091 0.40827 0 1 303190 13827 6685 8948 8951 13940 13940 -0.0148856652166387 ESTCVFRN 8 Unmodified _ESTCVFRN_ 0 0 0 ENST00000397137.5_2_20:36146318-36146510:-|nuORF ENST00000397137.5_2_20:36146318-36146510:-|nuORF ENST00000397137.5_2_20:36146318-36146510:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72332763671875 2 478.218734 954.422915 0.73527 0.00035162 0.45203 0.00021617 1.1873 0.00056779 478.21806596607996 104.65 1.2416 100.6 100.02 101.26 -4.0543 45 34 2 0 0 0 0.58432 1 20109 20109 23.148 6.2061 1 1443700 13828 9458 8949 8952 13941 13941 -0.056119089107937725 ESTGIHETT 9 Unmodified _ESTGIHETT_ 0 0 0 ACTA1|p.A274T|1|0.54|ENSG00000143632|chr1:229431891-229431891|C/T|missense_variant ACTA1|p.A274T|1|0.54|ENSG00000143632|chr1:229431891-229431891|C/T|missense_variant ACTA1|p.A274T|1|0.54|ENSG00000143632|chr1:229431891-229431891|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 487.7258605957031 2 487.724904 973.435254 0.17015 8.2986E-05 -0.87253 -0.00042555 -0.70238 -0.00034257 487.7243524283655 147.7 0.38463 147.7 147.47 147.85 0 14 10 2 0 0 0 0.35556 1 29543 29543 12.241 2.0901 1 1617300 13829 41 8950 8953 13942 13942 -0.05252593966758923 ESTGIHETT 9 Unmodified _ESTGIHETT_ 0 0 0 ACTA1|p.A274T|1|0.54|ENSG00000143632|chr1:229431891-229431891|C/T|missense_variant ACTA1|p.A274T|1|0.54|ENSG00000143632|chr1:229431891-229431891|C/T|missense_variant ACTA1|p.A274T|1|0.54|ENSG00000143632|chr1:229431891-229431891|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 487.724904 973.435254 0.25355 0.00012366 -1.9265 -0.00093962 -1.673 -0.00081595 487.72369543090815 152.47 0.38649 147.72 147.53 147.92 -4.7523 0.010181 -0.00043121 NaN 12.241 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 759690 13830 41 8950 8953 -0.05252593966758923 ESTGMALMLI 10 Unmodified _ESTGMALMLI_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.M4154Nfs*4|1|0.21|ENSG00000155657|chr2:178739821-178739822|-/T|frameshift_variant;TTN|p.T4116Sfs*25|1|0.04|ENSG00000155657|chr2:178739937-178739938|-/CTATTATATATGAGGAA|frameshift_variant;TTN|p.P4036Qfs*14|1|0.19|ENSG00000155657|chr2:178740175-178740175|G/-|frameshift_variant;TTN|p.I3592Lfs*36|1|0.25|ENSG00000155657|chr2:178741508-178741508|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2813720703125 2 533.269578 1064.5246 NaN NaN NaN NaN NaN NaN NaN 154.39 1 154.39 153.89 154.89 0 0 0 0 0.22588 1 30944 30944 10.074 3.3508 1 13831 5053;26536 8951 8954 13943 13943 -0.0050779860325746995 ESTHPLPAK 9 Unmodified _ESTHPLPAK_ 0 0 0 nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;ENST00000465643.1_1_7:40132349-40134576:+|nuORF nc|ENSG00000065883|Q14004-2|CDK13 nc|ENSG00000065883|Q14004-2|CDK13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2633361816406 2 490.263999 978.513445 -0.13005 -6.3758E-05 0.0030815 1.5107E-06 -0.12697 -6.2248E-05 490.26381972535773 64.046 0.41918 64.046 63.852 64.271 0 25 11 3 0 0 0 0.37087 1 12305 12305 1.2148 0.83524 1 5356300 13832 1361 8952 8955 13944 13944 0.023328834091330464 ESTITFGTA 9 Unmodified _ESTITFGTA_ 0 0 0 CHRM5|p.P191S|1|0.47|ENSG00000184984|chr15:34063288-34063288|C/T|missense_variant CHRM5|p.P191S|1|0.47|ENSG00000184984|chr15:34063288-34063288|C/T|missense_variant CHRM5|p.P191S|1|0.47|ENSG00000184984|chr15:34063288-34063288|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24798583984375 2 463.726915 925.439277 0.43352 0.00020104 -0.49853 -0.00023118 -0.065011 -3.0147E-05 463.7266213403489 99.679 1.533 99.679 99.195 100.73 0 127 43 4 0 0 0 0.54354 1 19499 19499 16.942 2.3606 1 73751000 13833 551 8953 8956 13945 13945 -0.02642504473055851 ESTKADVVI 9 Unmodified _ESTKADVVI_ 0 0 0 tr|U7SSJ3|U7SSJ3_FUSNUSignalrecognitionparticlereceptorFtsYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsYPE=3SV=1 tr|U7SSJ3|U7SSJ3_FUSNUSignalrecognitionparticlereceptorFtsYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsYPE=3SV=1 tr|U7SSJ3|U7SSJ3_FUSNUSignalrecognitionparticlereceptorFtsYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsYPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7664794921875 2 481.263665 960.512776 0.26082 0.00012552 0.26244 0.0001263 0.52326 0.00025182 481.26374060766307 105.57 0.57191 105.57 105.21 105.78 0 25 15 2 0 0 0 0.38188 1 20753 20753 26.884 0 1 1756900 13834 26105 8954 8957 13946 13946 0.030940439694290944 ESTKADVVI 9 Unmodified _ESTKADVVI_ 0 0 0 tr|U7SSJ3|U7SSJ3_FUSNUSignalrecognitionparticlereceptorFtsYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsYPE=3SV=1 tr|U7SSJ3|U7SSJ3_FUSNUSignalrecognitionparticlereceptorFtsYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsYPE=3SV=1 tr|U7SSJ3|U7SSJ3_FUSNUSignalrecognitionparticlereceptorFtsYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsYPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25469970703125 2 481.263665 960.512776 -0.17807 -8.5701E-05 0.30345 0.00014604 0.12537 6.0336E-05 481.2638060529451 109.91 0.67583 105.46 104.98 105.66 -4.4518 28 18 2 0 0 0 0.48644 1 21112 21112 20.454 0 1 1317700 13835 26105 8954 8957 13947 13947 0.030940439694290944 ESTLFGSVI 9 Unmodified _ESTLFGSVI_ 0 0 0 C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant;ENSG00000182326|ENST00000360817|C1S;ENST00000443875.5_1_12:7174318-7177952:+|nuORF;ENST00000495061.5_1_12:7174408-7176017:+|nuORF C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.03900146484375 3 318.171047 951.491313 NaN NaN NaN NaN NaN NaN NaN 78.014 1 78.014 77.514 78.514 0 0 0 0 0.23508 1 15179 15179 2.2828 0.43854 1 13836 351 8955 8958 13948 13948 0.0136265894071812 ESTLGLHTAY 10 Unmodified _ESTLGLHTAY_ 0 0 0 REV__ENST00000574946.5_1_17:6025089-6025197:+|nuORF REV__ENST00000574946.5_1_17:6025089-6025197:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7867431640625 2 546.272021 1090.52949 -0.30912 -0.00016886 0.36919 0.00020168 0.060068 3.2813E-05 546.2721874417598 23.688 2.7126 21.899 20.851 23.564 -1.7886 234 78 5 0 0 0 0.70357 1 3653 3653 10.824 2.2306 1 74350000 + 13837 23195 8956 8959 13949 13949 -0.01215455144642874 ESTLLKNKY 9 Unmodified _ESTLLKNKY_ 0 0 0 REV__nc|ENSG00000160145|O60229-2|KALRN REV__nc|ENSG00000160145|O60229-2|KALRN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7742309570312 2 548.305864 1094.59717 0.45902 0.00025168 -0.5704 -0.00031276 -0.11138 -6.1072E-05 548.3055253494914 39.417 0.44317 39.417 39.166 39.609 0 28 12 3 0 0 0 0.84208 1 7290 7290 3.9444 0 1 1820300 + 13838 24115 8957 8960 13950 13950 0.05365994786188821 ESTPSSPPP 9 Unmodified _ESTPSSPPP_ 0 0 0 REV__ENSG00000145743|ENST00000542267|FBXL17 REV__ENSG00000145743|ENST00000542267|FBXL17 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.14990234375 2 449.711265 897.407977 NaN NaN NaN NaN NaN NaN NaN 47.262 1 44.32 43.82 44.82 -2.9421 0 0 0 0.23508 1 8612 8612 12.532 3.9383 1 + 13839 16852 8958 8961 13951 13951 -0.04483077507143207 ESTPTGPVPTG 11 Unmodified _ESTPTGPVPTG_ 0 0 0 REV__ENSG00000186918|ENST00000344423|ZNF395 REV__ENSG00000186918|ENST00000344423|ZNF395 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.256591796875 2 521.756204 1041.49785 -0.68587 -0.00035786 0.35759 0.00018658 -0.32828 -0.00017128 521.7564514697913 50.795 1.4114 47.749 46.992 48.403 -3.0453 70 40 2 0 0 0 0.6353 1 9285 9285 16.149 0 1 1665800 + 13840 19065 8959 8962 13952 13952 -0.021234478985661553 ESTQFLDLL 9 Unmodified _ESTQFLDLL_ 0 0 0 REV__ENSG00000006634|ENST00000265728|DBF4 REV__ENSG00000006634|ENST00000265728|DBF4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2736206054688 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 149.5 1 149.5 149 150 0 0 0 0 0.18039 1 29931 29931 2.8827 1.1908 1 + 13841 13876 8960 8963 13953 13953 0.009303131409069465 ESTRAEPTTA 10 Unmodified _ESTRAEPTTA_ 0 0 0 REV__MMRN1|p.T664Ffs*13|1|0.08|ENSG00000138722|chr4:89935669-89935670|-/TTTGATTTAAC|frameshift_variant REV__MMRN1|p.T664Ffs*13|1|0.08|ENSG00000138722|chr4:89935669-89935670|-/TTTGATTTAAC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2612915039062 2 531.756735 1061.49892 0.67196 0.00035732 -0.46457 -0.00024704 0.20739 0.00011028 531.7564539501441 22.355 0.55121 20.881 20.66 21.211 -1.4742 45 15 4 0 0 0 0.57807 1 3829 3829 20.415 3.3016 1 5165000 + 13842 16483 8961 8964 13954 13954 -0.02937233529655714 ESTSTPIPNP 10 Unmodified _ESTSTPIPNP_ 0 0 0 REV__ENST00000340437.8_1_11:61170494-61170638:-|nuORF REV__ENST00000340437.8_1_11:61170494-61170638:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2576904296875 2 521.756204 1041.49785 -0.3754 -0.00019587 0.22198 0.00011582 -0.15342 -8.0049E-05 521.7562703068809 50.834 1.8014 47.952 46.761 48.563 -2.8824 72 50 2 0 0 0 0.37059 1 9538 9538 32.786 8.7651 1 1396900 + 13843 20706 8962 8965 13955 13955 -0.021234478985661553 ESTSTPIPNP 10 Unmodified _ESTSTPIPNP_ 0 0 0 REV__ENST00000340437.8_1_11:61170494-61170638:-|nuORF REV__ENST00000340437.8_1_11:61170494-61170638:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2571411132812 2 521.756204 1041.49785 -0.68587 -0.00035786 0.35759 0.00018658 -0.32828 -0.00017128 521.7564514697913 50.795 1.4114 47.749 46.992 48.403 -3.0453 70 40 2 0 0 0 0.4708 1 9218 9218 26.268 5.8536 1 1665800 + 13844 20706 8962 8965 13956 13956 -0.021234478985661553 ESTSTPIPNP 10 Unmodified _ESTSTPIPNP_ 0 0 0 REV__ENST00000340437.8_1_11:61170494-61170638:-|nuORF REV__ENST00000340437.8_1_11:61170494-61170638:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.25732421875 2 521.756204 1041.49785 -0.014834 -7.7399E-06 -0.35227 -0.0001838 -0.3671 -0.00019154 521.7560808321588 50.782 1.5546 47.731 46.862 48.417 -3.0517 70 44 2 0 0 0 0.4708 1 9251 9251 26.268 6.9062 1 1695500 + 13845 20706 8962 8965 13957 13957 -0.021234478985661553 ESTTTDGY 8 Unmodified _ESTTTDGY_ 0 0 0 REV__ENST00000592222.5_1_19:1115804-1132196:-|nuORF REV__ENST00000592222.5_1_19:1115804-1132196:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23614501953125 2 437.177255 872.339957 NaN NaN NaN NaN NaN NaN NaN 65.126 1 62.079 61.579 62.579 -3.047 0 0 0 0.21486 1 12597 12597 9.3474 2.9933 1 + 13846 14176 8963 8966 13958 13958 -0.1013194715778809 ESTTTDGY 8 Unmodified _ESTTTDGY_ 0 0 0 REV__ENST00000592222.5_1_19:1115804-1132196:-|nuORF REV__ENST00000592222.5_1_19:1115804-1132196:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.236083984375 2 437.177255 872.339957 NaN NaN NaN NaN NaN NaN NaN 65.422 1 61.964 61.464 62.464 -3.4581 0 0 0 0.21486 1 12242 12242 9.3474 2.9933 1 + 13847 14176 8963 8966 13959 13959 -0.1013194715778809 ESVATGET 8 Unmodified _ESVATGET_ 0 0 0 REV__ENSG00000160703|ENST00000409109|NLRX1 REV__ENSG00000160703|ENST00000409109|NLRX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 397.4931945800781 2 397.18234 792.350128 NaN NaN NaN NaN NaN NaN NaN 132.57 1 127.71 127.21 128.21 -4.8527 0 0 0 0.23664 1 25466 25466 3.2813 3.1584 1 + 13848 17430 8964 8967 13960 13960 -0.054353394325744375 ESVEKPYK 8 Unmodified _ESVEKPYK_ 0 0 0 ENSG00000198182|ENST00000355202|ZNF607;nc|ENSG00000198182|Q96SK3-3|ZNF607;nc|ENSG00000198182|Q96SK3-2|ZNF607 ENSG00000198182|ENST00000355202|ZNF607 ENSG00000198182|ENST00000355202|ZNF607 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25848388671875 2 490.258382 978.502212 0.085559 4.1946E-05 0.91593 0.00044904 1.0015 0.00049099 490.2587848879822 66.869 0.21404 63.76 63.685 63.899 -3.1086 7 5 2 0 0 0 0.69031 1 12970 12970 15.847 15.847 1 1611400 13849 7436 8965 8968 13961 13961 0.012100613149982564 ESVGLMDY 8 Unmodified _ESVGLMDY_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L;REV__TAF1L|p.R366Q|1|0.36|ENSG00000122728|chr9:32634483-32634483|C/T|missense_variant REV__ENSG00000122728|ENST00000242310|TAF1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2215576171875 2 457.202218 912.389884 0.14657 6.7012E-05 0.018025 8.2411E-06 0.1646 7.5253E-05 457.2021932038375 128.69 0.73482 123.95 123.49 124.22 -4.7408 41 20 3 0 0 0 0.69713 1 24761 24761 19.439 4.8573 1 2404500 + 13850 15703;24769 8966 8969 13962 13962 -0.06981535753493517 ESVGLMDY 8 Unmodified _ESVGLMDY_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L;REV__TAF1L|p.R366Q|1|0.36|ENSG00000122728|chr9:32634483-32634483|C/T|missense_variant REV__ENSG00000122728|ENST00000242310|TAF1L MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 457.202218 912.389884 0.26618 0.0001217 -0.13153 -6.0135E-05 0.13466 6.1565E-05 457.2021485495417 123.78 0.6021 123.78 123.42 124.02 0 -0.081422 -0.00024728 NaN 19.439 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2415600 + 13851 15703;24769 8966 8969 -0.06981535753493517 ESVGLMDY 8 Unmodified _ESVGLMDY_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L;REV__TAF1L|p.R366Q|1|0.36|ENSG00000122728|chr9:32634483-32634483|C/T|missense_variant REV__ENSG00000122728|ENST00000242310|TAF1L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.202218 912.389884 -0.052728 -2.4107E-05 0.30303 0.00013855 0.2503 0.00011444 457.20230612443356 128.49 0.7485 123.86 123.51 124.26 -4.6292 -0.0013003 0.00015008 NaN 19.439 37 20 2 NaN NaN NaN NaN 0 NaN NaN 0 4011200 + 13852 15703;24769 8966 8969 -0.06981535753493517 ESVGLMDY 8 Unmodified _ESVGLMDY_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L;REV__TAF1L|p.R366Q|1|0.36|ENSG00000122728|chr9:32634483-32634483|C/T|missense_variant REV__ENSG00000122728|ENST00000242310|TAF1L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 457.202218 912.389884 0.073844 3.3762E-05 0.30414 0.00013905 0.37798 0.00017281 457.2022854945109 128.68 0.74911 123.87 123.48 124.23 -4.817 0.00040604 0.00015109 NaN 19.439 42 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2956100 + 13853 15703;24769 8966 8969 -0.06981535753493517 ESVGLMDY 8 Unmodified _ESVGLMDY_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L;REV__TAF1L|p.R366Q|1|0.36|ENSG00000122728|chr9:32634483-32634483|C/T|missense_variant REV__ENSG00000122728|ENST00000242310|TAF1L MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 457.202218 912.389884 0.14657 6.7012E-05 0.018025 8.2411E-06 0.1646 7.5253E-05 457.2021932038375 128.69 0.73482 123.95 123.49 124.22 -4.7408 0.082317 -0.00011053 NaN 19.439 41 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2404500 + 13854 15703;24769 8966 8969 -0.06981535753493517 ESVGRGRGP 9 Unmodified _ESVGRGRGP_ 0 0 0 REV__nc|ENSG00000164050|O43157-2|PLXNB1 REV__nc|ENSG00000164050|O43157-2|PLXNB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2412109375 2 457.743765 913.472977 -0.94425 -0.00043222 -4.0012 -0.0018315 -4.9454 -0.0022637 457.74239659988035 19.925 0.20078 18.29 18.227 18.428 -1.6351 6 5 2 0 0 0 0.84208 1 3054 3054 11.64 9.3376 1 216370 + 13855 17641 8967 8970 13963 13963 0.012779618093873069 ESVHALFAAV 10 Unmodified _ESVHALFAAV_ 0 0 0 ENSG00000078142|ENST00000262039|PIK3C3;ENST00000587328.2_1_18:39644671-39661098:+|nuORF ENSG00000078142|ENST00000262039|PIK3C3 ENSG00000078142|ENST00000262039|PIK3C3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2716674804688 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 55.379 1 52.495 51.995 52.995 -2.8837 0 0 0 0.22588 1 10596 10596 10.074 1.9184 1 13856 1571 8968 8971 13964 13964 0.025174564432290936 ESVHKKRPD 9 Unmodified _ESVHKKRPD_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000032840 REV__CON__ENSEMBL:ENSBTAP00000032840 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7760620117188 2 548.298904 1094.58326 0.32579 0.00017863 -0.14203 -7.7875E-05 0.18376 0.00010075 548.2988072210825 21.708 0.27237 21.708 21.566 21.838 0 13 7 2 0 0 0 0.8319 1 3647 3647 0.45834 0 1 1082000 + + 13857 13510 8969 8972 13965 13965 0.03974762077768901 ESVIADVQEP 10 Unmodified _ESVIADVQEP_ 0 0 0 REV__ENSG00000198890|ENST00000370078|PRMT6 REV__ENSG00000198890|ENST00000370078|PRMT6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7700805664062 2 543.769311 1085.52407 0.14353 7.8045E-05 1.2429 0.00067583 1.3864 0.00075388 543.7699900254216 26.679 1.1695 24.757 24.02 25.19 -1.9222 58 32 2 0 0 0 0.51622 1 4468 4468 23.79 3.3752 1 1279400 + 13858 19476 8970 8973 13966 13966 -0.015271787270876303 ESVILNPHA 9 Unmodified _ESVILNPHA_ 0 0 0 REV__ENSG00000250374|ENST00000503032|TRIM75 REV__ENSG00000250374|ENST00000503032|TRIM75 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2640380859375 2 490.263999 978.513445 0.079089 3.8774E-05 -0.22238 -0.00010902 -0.14329 -7.025E-05 490.26381936217626 67.216 0.56035 64.107 63.826 64.387 -3.1086 22 15 2 0 0 0 0.39168 1 13047 13047 0.87518 0.19379 1 2054600 + 13859 19826 8971 8974 13967 13967 0.023328834091330464 ESVKDLIRY 9 Unmodified _ESVKDLIRY_ 0 0 0 ENSG00000111602|ENST00000553532|TIMELESS;nc|ENSG00000111602|Q9UNS1-2|TIMELESS ENSG00000111602|ENST00000553532|TIMELESS ENSG00000111602|ENST00000553532|TIMELESS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2221984863281 3 374.876634 1121.60807 -1.7799 -0.00066723 1.3015 0.00048791 -0.47835 -0.00017932 375.21197059450895 18.907 0.34922 17.272 17.112 17.462 -1.6351 18 9 3 0 0 0 0.72996 1 2835 2835 4.897 1.9018 1 329310 13860 2629 8972 8975 13968 13968 0.05213397160491695 ESVKEEKSF 9 Unmodified _ESVKEEKSF_ 0 0 0 REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1 REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2822265625 2 541.771854 1081.52915 0.092348 5.0032E-05 3.0167 0.0016343 3.109 0.0016844 542.2758623239766 95.026 0.66252 91.145 90.95 91.613 -3.881 33 18 3 0 0 0 0.73268 1 18224 18224 13.042 1.4022 1 1296600 + 13861 24228 8973 8976 13969 13969 -0.008348748644721127 ESVKLVQI 8 Unmodified _ESVKLVQI_ 0 0 0 RAP1GDS1|p.A532V|1|0.41|ENSG00000138698|chr4:98436967-98436967|C/T|missense_variant RAP1GDS1|p.A532V|1|0.41|ENSG00000138698|chr4:98436967-98436967|C/T|missense_variant RAP1GDS1|p.A532V|1|0.41|ENSG00000138698|chr4:98436967-98436967|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2391357421875 2 458.279118 914.543683 -0.16648 -7.6293E-05 0.49909 0.00022872 0.33261 0.00015243 458.27935298998074 81.838 0.38142 78.15 77.907 78.289 -3.6879 17 10 2 0 0 0 0.41341 1 15597 15597 26.884 0 1 831040 13862 12861 8974 8977 13970 13970 0.08299242074338053 ESVKNEPL 8 Unmodified _ESVKNEPL_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2305603027344 2 458.242732 914.470912 -0.10521 -4.821E-05 0.16201 7.4238E-05 0.0568 2.6028E-05 458.2427716676065 92.973 1.2064 88.982 88.449 89.656 -3.9907 113 34 5 0 0 0 0.71273 1 18250 18250 12.532 0.89125 1 116410000 + 13863 14487 8975 8978 13971 13971 0.010254882809135779 ESVKQLNG 8 Unmodified _ESVKQLNG_ 0 0 0 ENSG00000206384|ENST00000358511|COL6A6 ENSG00000206384|ENST00000358511|COL6A6 ENSG00000206384|ENST00000358511|COL6A6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2145080566406 2 437.735074 873.455596 0.21259 9.3058E-05 -0.16676 -7.2995E-05 0.045832 2.0062E-05 437.7348850408156 28.37 0.34513 28.37 28.18 28.525 0 13 9 2 0 0 0 0.97966 1 5057 5057 16.942 4.4107 1 525680 13864 7669 8976 8979 13972 13972 0.013806214837245534 ESVKQSLE 8 Unmodified _ESVKQSLE_ 0 0 0 REV__ENSG00000142621|ENST00000688493|FHAD1 REV__ENSG00000142621|ENST00000688493|FHAD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24163818359375 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 132.94 1 128.3 127.8 128.8 -4.6399 0 0 0 0.10839 1 26208 26208 6.3914 0 1 + 13865 16680 8977 8980 13973 13973 0.0033318441829806034 ESVKQSLE 8 Unmodified _ESVKQSLE_ 0 0 0 REV__ENSG00000142621|ENST00000688493|FHAD1 REV__ENSG00000142621|ENST00000688493|FHAD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2408142089844 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 132.95 1 128.09 127.59 128.59 -4.8527 0 0 0 0.10839 1 25537 25537 8.966 2.5746 1 + 13866 16680 8977 8980 13974 13974 0.0033318441829806034 ESVLHPQGQ 9 Unmodified _ESVLHPQGQ_ 0 0 0 REV__ENST00000456935.6_1_19:12769146-12769271:-|nuORF REV__ENST00000456935.6_1_19:12769146-12769271:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.0058898925781 3 332.169929 993.487959 -0.26257 -8.7219E-05 -0.35218 -0.00011698 -0.61476 -0.0002042 332.1699278139265 33.351 0.38338 31.034 30.869 31.252 -2.3175 17 10 2 0 0 0 0.87918 1 6108 6108 2.7352 0 1 332410 + 13867 21857 8978 8981 13975 13975 -0.009045911132830042 ESVNLDAIP 9 Unmodified _ESVNLDAIP_ 0 0 0 ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7372131347656 2 479.248015 956.481476 -0.18959 -9.0863E-05 0.24622 0.000118 0.056627 2.7138E-05 479.2481441898125 53.008 1.6705 50.124 49.307 50.977 -2.8837 103 47 3 0 0 0 0.19141 1 10062 10062 49.554 5.696 1 3760100 13868 2524 8979 8982 13976 13976 0.001494709353323742 ESVNLDAIP 9 Unmodified _ESVNLDAIP_ 0 0 0 ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7439270019531 2 479.248015 956.481476 0.055362 2.6532E-05 0.14177 6.7942E-05 0.19713 9.4474E-05 479.2480654660586 53.217 1.6179 50.13 49.37 50.988 -3.0876 83 45 2 0 0 0 0.12663 1 9829 9829 22.658 0 1 3952600 13869 2524 8979 8982 13977 13977 0.001494709353323742 ESVPEWAI 8 Unmodified _ESVPEWAI_ 0 0 0 REV__nc|ENSG00000149972|O94779-4|CNTN5 REV__nc|ENSG00000149972|O94779-4|CNTN5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2396240234375 2 465.732 929.449448 -0.40975 -0.00019084 -0.68089 -0.00031711 -1.0906 -0.00050795 465.73149545821985 38.099 0.20502 35.63 35.471 35.676 -2.4688 7 5 2 0 0 0 0.97994 1 7053 7053 15.768 0 1 427410 + 13870 17023 8980 8983 13978 13978 -0.018098967478181294 ESVPKQIPP 9 Unmodified _ESVPKQIPP_ 0 0 0 ENSG00000173988|ENST00000595396|LRRC63 ENSG00000173988|ENST00000595396|LRRC63 ENSG00000173988|ENST00000595396|LRRC63 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.005615234375 3 332.190442 993.549496 -0.60746 -0.00020179 1.1739 0.00038995 0.56642 0.00018816 332.19063548602236 38.376 1.885 35.827 34.904 36.789 -2.5491 134 53 4 0 0 0 0.8825 1 6984 6984 1.0715 0 1 12998000 13871 6320 8981 8984 13979 13979 0.052463405860066814 ESVPKQIPP 9 Unmodified _ESVPKQIPP_ 0 0 0 ENSG00000173988|ENST00000595396|LRRC63 ENSG00000173988|ENST00000595396|LRRC63 ENSG00000173988|ENST00000595396|LRRC63 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 332.190442 993.549496 0.059686 1.9827E-05 0.47924 0.0001592 0.53893 0.00017903 332.1904002756793 38.271 1.7827 35.829 35.039 36.821 -2.4419 -0.077055 -0.00054272 NaN 1.0715 139 50 4 NaN NaN NaN NaN 0 NaN NaN 0 11542000 13872 6320 8981 8984 0.052463405860066814 ESVPKQIPP 9 Unmodified _ESVPKQIPP_ 0 0 0 ENSG00000173988|ENST00000595396|LRRC63 ENSG00000173988|ENST00000595396|LRRC63 ENSG00000173988|ENST00000595396|LRRC63 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 332.190442 993.549496 -0.4989 -0.00016573 1.1764 0.0003908 0.67754 0.00022507 332.19057704888144 38.321 1.6703 35.916 35.053 36.723 -2.4049 0.009753 0.00015209 NaN 1.0715 130 47 5 NaN NaN NaN NaN 0 NaN NaN 0 7092100 13873 6320 8981 8984 0.052463405860066814 ESVPPAGP 8 Unmodified _ESVPPAGP_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-4|ZNF451;KIAA1586|p.I207Lfs*17|2|0.28|ENSG00000168116|chr6:57053111-57053111|A/-|frameshift_variant;ZNF451|p.K220Nfs*85|1|0.34|ENSG00000112200|chr6:57134823-57134823|A/-|frameshift_variant;ENSG00000168116|ENST00000370733|KIAA1586;ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451;ZNF451|p.L304Dfs*12|1|0.07|ENSG00000112200|chr6:57141999-57142000|TT/-|frameshift_variant;KIAA1586|p.S537Qfs*20|1|0.31|ENSG00000168116|chr6:57054105-57054105|T/-|frameshift_variant nc|ENSG00000112200|Q9Y4E5-4|ZNF451;ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant;KIAA1586|p.S537Qfs*20|1|0.31|ENSG00000168116|chr6:57054105-57054105|T/-|frameshift_variant ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 377.2024230957031 2 377.192511 752.370469 NaN NaN NaN NaN NaN NaN NaN 50.203 1 47.204 46.704 47.704 -2.999 0 0 0 0.22934 1 9193 9193 0.25148 0 1 13874 12285;2673;11995 8982 8985 13980 13980 -0.015621239820916344 ESVREDVKY 9 Unmodified _ESVREDVKY_ 0 0 0 ENST00000588685.1_1_19:56989652-56989751:+|nuORF;ENST00000585445.1_1_19:56989652-57005541:+|nuORF ENST00000588685.1_1_19:56989652-56989751:+|nuORF ENST00000588685.1_1_19:56989652-56989751:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2165222167969 3 375.524261 1123.55095 0.95621 0.00035908 -1.6081 -0.00060389 -0.65191 -0.00024481 375.52354812496606 25.737 0.27555 24.089 24 24.275 -1.6482 11 7 2 0 0 0 0.88054 1 4524 4524 0.86438 0 1 656940 13875 11534 8983 8986 13981 13981 -0.005880701158957891 ESVRPKKI 8 Unmodified _ESVRPKKI_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7315979003906 2 478.798009 955.581465 NaN NaN NaN NaN NaN NaN NaN 101.46 1 101.46 100.96 101.96 0 0 0 0 0.21486 1 19915 19915 5.7604 0 1 13876 5126 8984 8987 13982 13982 0.10189753059808027 ESVSWLCH 8 Unmodified _ESVSWLCH_ 0 0 0 ENST00000474490.1_1_3:139236319-139236406:-|nuORF ENST00000474490.1_1_3:139236319-139236406:-|nuORF ENST00000474490.1_1_3:139236319-139236406:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2531433105469 2 480.715827 959.417102 0.15766 7.5791E-05 1.0488 0.00050419 1.2065 0.00057998 480.71624172095676 134.45 0.66592 129.63 129.2 129.86 -4.8175 30 18 2 0 0 0 0.56049 1 25914 25914 24.674 2.9272 1 1718700 13877 10258 8985 8988 13983 13983 -0.06423007422461069 ESVTFHLF 8 Unmodified _ESVTFHLF_ 0 0 0 nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L nc|ENSG00000166938|Q8TF46-2|DIS3L nc|ENSG00000166938|Q8TF46-2|DIS3L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27606201171875 2 490.247818 978.481082 NaN NaN NaN NaN NaN NaN NaN 150.95 1 146.2 145.7 146.7 -4.7496 0 0 0 0.21323 1 29983 29983 14.582 1.5392 1 13878 5768 8986 8989 13984 13984 -0.009019039938493734 ESWDDASDY 9 Unmodified _ESWDDASDY_ 0 0 0 REV__nc|ENSG00000095787|Q9BTA9-5|WAC REV__nc|ENSG00000095787|Q9BTA9-5|WAC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7705688476562 2 544.196176 1086.3778 -0.18071 -9.834E-05 -0.7271 -0.00039568 -0.9078 -0.00049402 544.195747641837 37.204 1.6737 34.735 33.797 35.471 -2.4688 57 47 2 0 0 0 0.73309 1 6939 6939 4.756 0 1 633950 + 13879 14616 8987 8990 13985 13985 -0.1619348096298836 ESWFQLIG 8 Unmodified _ESWFQLIG_ 0 0 0 REV__EFCAB8|p.T943Hfs*12|1|0.12|ENSG00000215529|chr20:32943665-32943666|-/C|frameshift_variant REV__EFCAB8|p.T943Hfs*12|1|0.12|ENSG00000215529|chr20:32943665-32943666|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26458740234375 2 490.247818 978.481082 0.44744 0.00021936 -2.2922 -0.0011237 -1.8447 -0.00090438 490.2456321783181 76.662 0.70476 76.662 76.31 77.015 0 49 19 3 0 0 0 8448 1 14943 14943 9.544 5.9569 1 4249100 + 13880 13785 8988 8991 13986 13986 -0.009019039938493734 ESWKKVLVY 9 Unmodified _ESWKKVLVY_ 0 0 0 REV__nc|ENSG00000167881|Q9UHB9-4|SRP68 REV__nc|ENSG00000167881|Q9UHB9-4|SRP68 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.329345703125 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 124.42 1 119.65 119.15 120.15 -4.7681 0 0 0 0.19697 1 23895 23895 2.6312 2.602 1 + 13881 17977 8989 8992 13987 13987 0.06935175545504535 ESWLWSGP 8 Unmodified _ESWLWSGP_ 0 0 0 REV__ENST00000464470.1_1_13:32999202-32999613:-|nuORF REV__ENST00000464470.1_1_13:32999202-32999613:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2537841796875 2 481.224342 960.434132 0.32799 0.00015784 -1.5695 -0.0007553 -1.2416 -0.00059747 481.22345807152993 28.892 0.38315 26.896 26.728 27.111 -1.9962 14 10 2 0 0 0 0.66265 1 4927 4927 18.135 3.2967 1 390870 + 13882 21937 8990 8993 13988 13988 -0.047667635449897716 ESYCDEER 8 Unmodified _ESYCDEER_ 0 0 0 REV__CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant REV__CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.4476623535156 3 344.130923 1029.37094 -0.29023 -9.9876E-05 -0.60905 -0.00020959 -0.89927 -0.00030947 344.4642547560101 52.412 0.78439 52.412 52.182 52.966 0 38 21 2 0 0 0 8448 1 9997 9997 0.12286 0 1 6148100 + 13883 13457 8991 8994 13989 13989 -0.14257117115221263 ESYCMDTSH 9 Unmodified _ESYCMDTSH_ 0 0 0 ENSG00000183060|ENST00000684762|LYSMD4;nc|ENSG00000183060|Q5XG99-2|LYSMD4 ENSG00000183060|ENST00000684762|LYSMD4 ENSG00000183060|ENST00000684762|LYSMD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5539855957031 3 358.128525 1071.36375 -0.11871 -4.2513E-05 -1.525 -0.00054614 -1.6437 -0.00058865 358.1279660941298 39.554 0.37524 39.554 39.269 39.644 0 20 10 2 0 0 0 0.59677 1 7336 7336 0.40827 0.335 1 710940 13884 6825 8992 8995 13990 13990 -0.169081729872687 ESYGLRNAA 9 Unmodified _ESYGLRNAA_ 0 0 0 REV__ENSG00000154654|ENST00000400546|NCAM2 REV__ENSG00000154654|ENST00000400546|NCAM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25726318359375 2 490.743431 979.472308 0.63695 0.00031258 -0.54642 -0.00026815 0.090532 4.4428E-05 490.7430781156393 21.821 0.54057 20.347 20.016 20.557 -1.4742 21 14 2 0 0 0 0.84208 1 3642 3642 7.2892 2.0586 1 690010 + 13885 17190 8993 8996 13991 13991 -0.018248776303494196 ESYHHGYPY 9 Unmodified _ESYHHGYPY_ 0 0 0 nc|ENSG00000091986|Q76M96-3|CCDC80;ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80 nc|ENSG00000091986|Q76M96-3|CCDC80 nc|ENSG00000091986|Q76M96-3|CCDC80 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3367919921875 2 576.740888 1151.46722 0.076083 4.388E-05 -4.0095 -0.0023124 -3.9334 -0.0022686 577.2416006005898 57.004 0.76537 57.004 56.778 57.543 0 39 21 3 0 0 0 0.8319 1 10960 10960 7.9102 0 1 2119400 13886 1818 8994 8997 13992 13992 -0.10245181492950906 ESYITNLRRQL 11 Unmodified _ESYITNLRRQL_ 0 0 0 ENSG00000161849|ENST00000257951|KRT84;CON__Q9NSB2;CON__Q6ISB0 ENSG00000161849|ENST00000257951|KRT84 ENSG00000161849|ENST00000257951|KRT84 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2578430175781 3 464.924647 1391.75211 0.35639 0.00016569 -3.4916 -0.0016233 -3.1352 -0.0014576 464.92251234372935 34.509 0.49334 32.294 32.193 32.686 -2.2158 15 13 2 0 0 0 0.77537 1 6050 6050 6.6235 2.5068 1 924190 + 13887 700 8995 8998 13993 13993 0.07190618920617453 ESYSMYVY 8 Unmodified _ESYSMYVY_ 0 0 0 HIST1H2BD|p.V40M|1|0.63|ENSG00000158373|chr6:26158287-26158287|G/A|missense_variant HIST1H2BD|p.V40M|1|0.63|ENSG00000158373|chr6:26158287-26158287|G/A|missense_variant HIST1H2BD|p.V40M|1|0.63|ENSG00000158373|chr6:26158287-26158287|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 521.15625 2 521.215326 1040.4161 -0.16495 -8.5976E-05 0.89443 0.00046619 0.72948 0.00038022 521.2158025722547 19.121 0.17257 17.725 17.641 17.813 -1.3966 7 4 2 0 0 0 1.0249 1 3133 3133 2.5775 2.1191 1 451070 13888 11906 8996 8999 13994 13994 -0.10249266582013661 ESYSMYVY 8 Unmodified _ESYSMYVY_ 0 0 0 HIST1H2BD|p.V40M|1|0.63|ENSG00000158373|chr6:26158287-26158287|G/A|missense_variant HIST1H2BD|p.V40M|1|0.63|ENSG00000158373|chr6:26158287-26158287|G/A|missense_variant HIST1H2BD|p.V40M|1|0.63|ENSG00000158373|chr6:26158287-26158287|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.215326 1040.4161 0.14583 7.601E-05 0.5634 0.00029365 0.70923 0.00036966 521.2156104137538 17.772 0.29046 17.772 17.625 17.915 0 0.02347 -0.00010917 NaN 2.5775 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 575670 13889 11906 8996 8999 -0.10249266582013661 ESYYHLWWEK 10 Unmodified _ESYYHLWWEK_ 0 0 0 ENST00000547733.1_1_12:39687284-39687350:-|nuORF ENST00000547733.1_1_12:39687284-39687350:-|nuORF ENST00000547733.1_1_12:39687284-39687350:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24139404296875 3 480.890944 1439.651 0.32631 0.00015692 0.31254 0.0001503 0.63885 0.00030722 480.8910417509585 119.16 0.56664 114.66 114.33 114.89 -4.502 24 15 2 0 0 0 0.744 1 23503 23503 3.5871 0.95582 1 2505400 13890 11145 8997 9000 13995 13995 -0.05123832782123827 ESYYHLWWEK 10 Unmodified _ESYYHLWWEK_ 0 0 0 ENST00000547733.1_1_12:39687284-39687350:-|nuORF ENST00000547733.1_1_12:39687284-39687350:-|nuORF ENST00000547733.1_1_12:39687284-39687350:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 480.890944 1439.651 -0.028154 -1.3539E-05 0.64209 0.00030878 0.61394 0.00029524 480.89120400710095 114.61 0.46162 114.61 114.19 114.65 0 -0.0032419 0.00056599 NaN 3.5871 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2987300 13891 11145 8997 9000 -0.05123832782123827 ESYYHLWWEK 10 Unmodified _ESYYHLWWEK_ 0 0 0 ENST00000547733.1_1_12:39687284-39687350:-|nuORF ENST00000547733.1_1_12:39687284-39687350:-|nuORF ENST00000547733.1_1_12:39687284-39687350:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 480.890944 1439.651 0.35098 0.00016878 -0.1058 -5.088E-05 0.24518 0.0001179 480.8907102191123 119.01 0.48978 114.6 114.38 114.87 -4.4088 -0.010561 -0.00051298 NaN 3.5871 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1800800 13892 11145 8997 9000 -0.05123832782123827 ETAAASLIRF 10 Unmodified _ETAAASLIRF_ 0 0 0 ENST00000344204.8_1_5:14406683-14419905:+|nuORF ENST00000344204.8_1_5:14406683-14419905:+|nuORF ENST00000344204.8_1_5:14406683-14419905:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 105.08 1 100.87 100.37 101.37 -4.2183 0 0 0 0.22588 1 20674 20674 3.8763 1.1411 1 13893 8886 8998 9001 13996 13996 0.0461712798901317 ETACLLCY 8 Unmodified _ETACLLCY_ 0 0 0 REV__ENST00000222345.10_1_19:38571927-38572134:+|nuORF REV__ENST00000222345.10_1_19:38571927-38572134:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2249755859375 2 458.201164 914.387775 0.96791 0.0004435 -0.075472 -3.4581E-05 0.89244 0.00040891 458.20103092601965 26.633 0.44131 24.851 24.552 24.993 -1.7821 23 12 2 0 0 0 0.89712 1 4706 4706 0.62683 0.3198 1 781410 + 13894 20033 8999 9002 13997 13997 -0.07284287762968233 ETAFHVHLI 9 Unmodified _ETAFHVHLI_ 0 0 0 REV__WNK3|p.R872Pfs*13|1|0.07|ENSG00000196632|chrX:54250092-54250093|-/AAAG|frameshift_variant REV__WNK3|p.R872Pfs*13|1|0.07|ENSG00000196632|chrX:54250092-54250093|-/AAAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2733154296875 2 533.787641 1065.56073 0.10552 5.6324E-05 2.1926 0.0011704 2.2982 0.0012267 534.291049743455 137.39 1.0532 132.75 132.41 133.46 -4.6413 36 29 2 0 0 0 0.52414 1 27173 27173 18.135 1.0221 1 5043200 + 13895 19265 9000 9003 13998 13998 0.03057162680147485 ETAGAPPKPLP 11 Unmodified _ETAGAPPKPLP_ 0 0 0 REV__ENST00000318291.4_1_12:752304-752412:+|nuORF REV__ENST00000318291.4_1_12:752304-752412:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21319580078125 3 359.86948 1076.58661 -0.27264 -9.8116E-05 0.26722 9.6165E-05 -0.0054214 -1.951E-06 359.86955852489035 60.282 0.61651 57.349 57.065 57.681 -2.9333 44 17 3 0 0 0 0.77537 1 11543 11543 6.6235 1.2207 1 6111600 + 13896 20534 9001 9004 13999 13999 0.05138012131760661 ETAGVLIVN 9 Unmodified _ETAGVLIVN_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2232666015625 2 458.260925 914.507297 0.040128 1.8389E-05 0.31288 0.00014338 0.35301 0.00016177 458.2609837467708 154.15 0.63203 149.38 149.05 149.68 -4.7684 30 17 2 0 0 0 0.12183 1 30643 30643 48.346 0 1 1619900 13897 6921 9002 9005 14000 14000 0.04662365177614447 ETAGVLIVN 9 Unmodified _ETAGVLIVN_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.260925 914.507297 0.10314 4.7264E-05 0.11624 5.327E-05 0.21938 0.00010053 458.26093445840564 154.71 0.49684 149.43 149.21 149.71 -5.2854 0.019558 1.4862E-05 NaN 48.346 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1772700 13898 6921 9002 9005 0.04662365177614447 ETAKKIKRP 9 Unmodified _ETAKKIKRP_ 0 0 0 nc|ENSG00000205221|Q6UXI7-3|VIT;nc|ENSG00000205221|Q6UXI7-2|VIT;nc|ENSG00000205221|Q6UXI7-5|VIT;nc|ENSG00000205221|Q6UXI7|VIT;ENSG00000205221|ENST00000379242|VIT nc|ENSG00000205221|Q6UXI7-3|VIT nc|ENSG00000205221|Q6UXI7-3|VIT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5599060058594 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 42.306 1 39.7 39.2 40.2 -2.606 0 0 0 0.19654 1 7606 7606 0.029283 0 1 13899 7635 9003 9006 14001 14001 0.1287340001395023 ETAKLSKAAY 10 Unmodified _ETAKLSKAAY_ 0 0 0 REV__ENSG00000116191|ENST00000367635|RALGPS2 REV__ENSG00000116191|ENST00000367635|RALGPS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2808227539062 2 541.298039 1080.58152 NaN NaN NaN NaN NaN NaN NaN 39.481 1 39.481 38.981 39.981 0 0 0 0 0.22569 1 7330 7330 15.847 4.2069 1 + 13900 15475 9004 9007 14002 14002 0.04445708269122406 ETAKVINVS 9 Unmodified _ETAKVINVS_ 0 0 0 REV__L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|19|2|sense REV__L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|19|2|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25482177734375 2 480.771657 959.528761 0.30568 0.00014696 -1.3579 -0.00065284 -1.0522 -0.00050588 480.77110201369265 45.914 0.4172 45.914 45.621 46.038 0 18 11 2 0 0 0 0.76271 1 8582 8582 3.2813 1.6287 1 1416100 + 13901 23749 9005 9008 14003 14003 0.04737750206345481 ETALLVDRY 9 Unmodified _ETALLVDRY_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2617797851562 2 540.290214 1078.56587 0.21428 0.00011578 -2.6384 -0.0014255 -2.4241 -0.0013097 540.2894457945304 101.41 1.2815 97.249 96.357 97.639 -4.1594 62 36 3 0 0 0 0.045725 1 19917 19917 72.968 23.035 1 8753300 13902 6448 9006 9009 14004 14004 0.029734217520854145 ETALLVDRY 9 Unmodified _ETALLVDRY_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.290214 1078.56587 0.32463 0.0001754 -1.8367 -0.00099233 -1.512 -0.00081694 540.2890942140689 97.405 0.65945 97.405 97.049 97.709 0 0.13368 0.00016183 NaN 72.968 46 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6673800 13903 6448 9006 9009 0.029734217520854145 ETALLVDRY 9 Unmodified _ETALLVDRY_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.290214 1078.56587 0.48487 0.00026197 -1.7877 -0.00096587 -1.3028 -0.0007039 540.2891032205675 101.27 0.63766 97.277 96.957 97.595 -3.9895 0.0063833 0.00021476 NaN 72.968 51 17 4 NaN NaN NaN NaN 0 NaN NaN 0 8128100 13904 6448 9006 9009 0.029734217520854145 ETAMGMIID 9 Unmodified _ETAMGMIID_ 0 0 0 ENSG00000163993|ENST00000296370|S100P ENSG00000163993|ENST00000296370|S100P ENSG00000163993|ENST00000296370|S100P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2643737792969 2 490.725003 979.435454 0.38679 0.00018981 -1.7322 -0.00085003 -1.3454 -0.00066022 490.7238683687747 67.693 0.17755 64.197 64.096 64.274 -3.4965 6 4 2 0 0 0 0.76271 1 12701 12701 20.454 2.3186 1 740630 13905 5493 9007 9010 14005 14005 -0.055086335627606786 ETAMGMIID 9 Unmodified _ETAMGMIID_ 0 0 0 ENSG00000163993|ENST00000296370|S100P ENSG00000163993|ENST00000296370|S100P ENSG00000163993|ENST00000296370|S100P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2637939453125 2 490.725003 979.435454 0.085251 4.1835E-05 0.61043 0.00029955 0.69568 0.00034139 490.72500825301216 67.339 0.62753 64.013 63.791 64.419 -3.3268 24 17 2 0 0 0 0.80521 1 12721 12721 15.847 9.4931 1 463120 13906 5493 9007 9010 14006 14006 -0.055086335627606786 ETAQVKQLKKH 11 Unmodified _ETAQVKQLKKH_ 0 0 0 REV__nc|ENSG00000143702|Q5SW79-3|CEP170 REV__nc|ENSG00000143702|Q5SW79-3|CEP170 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.229248046875 3 437.257738 1308.75138 NaN NaN NaN NaN NaN NaN NaN 72.353 1 69.042 68.542 69.542 -3.3107 0 0 0 0.22548 1 14101 14101 1.4074 1.2354 1 + 13907 16746 9008 9011 14007 14007 0.10935824271541605 ETAREGKQY 9 Unmodified _ETAREGKQY_ 0 0 0 ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ZGRF1|p.E2096Rfs*4|1|0.33|ENSG00000138658|chr4:112539576-112539577|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-3|ZGRF1;nc|ENSG00000138658|Q86YA3-6|ZGRF1;ENST00000514770.5_1_4:113532004-113549797:-|nuORF;nc|ENSG00000138658|Q86YA3-5|ZGRF1;ENST00000264370.9_1_4:113529030-113554332:-|nuORF;nc|ENSG00000138658|Q86YA3-4|ZGRF1 ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2666015625 2 541.26727 1080.51999 0.27215 0.00014731 -0.90288 -0.0004887 -0.63073 -0.00034139 541.2666240033168 128.06 0.60513 123.44 123.09 123.7 -4.6214 38 16 3 0 0 0 0.58804 1 25297 25297 13.906 1.3745 1 3079900 13908 4195 9009 9012 14008 14008 -0.01705223430121805 ETARPGRPGPG 11 Unmodified _ETARPGRPGPG_ 0 0 0 REV__nc|ENSG00000134046|Q9UBB5-3|MBD2 REV__nc|ENSG00000134046|Q9UBB5-3|MBD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7871704101562 2 547.788704 1093.56285 NaN NaN NaN NaN NaN NaN NaN 53.58 1 50.485 49.985 50.985 -3.0954 0 0 0 0.21129 1 9902 9902 16.149 4.5088 1 + 13909 16190 9010 9013 14009 14009 0.019815914179389438 ETAYGEFL 8 Unmodified _ETAYGEFL_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;GAPVD1|p.S186Ffs*2|1|0.33|ENSG00000165219|chr9:125302347-125302348|-/T|frameshift_variant nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.23895263671875 2 465.216183 928.417813 NaN NaN NaN NaN NaN NaN NaN 41.208 1 41.208 40.708 41.708 0 0 0 0 0.21486 1 7684 7684 8.5933 0 1 13910 5610 9011 9014 14010 14010 -0.0492588950174877 ETCRTEQL 8 Unmodified _ETCRTEQL_ 0 0 0 REV__ENST00000518860.1_1_8:67591882-67592170:+|nuORF REV__ENST00000518860.1_1_8:67591882-67592170:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2587585449219 2 490.229299 978.444045 NaN NaN NaN NaN NaN NaN NaN 108.93 1 104.47 103.97 104.97 -4.4518 0 0 0 0.21039 1 20905 20905 16.942 0 1 + 13911 22612 9012 9015 14011 14011 -0.04603943601921401 ETCSPGFY 8 Unmodified _ETCSPGFY_ 0 0 0 nc|ENSG00000145794|Q96KG7-2|MEGF10;MEGF10|p.N964Mfs*2|1|0.49|ENSG00000145794|chr5:127449129-127449129|A/-|frameshift_variant;ENSG00000145794|ENST00000503335|MEGF10 nc|ENSG00000145794|Q96KG7-2|MEGF10 nc|ENSG00000145794|Q96KG7-2|MEGF10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 452.1817321777344 2 452.181286 902.348019 NaN NaN NaN NaN NaN NaN NaN 158.37 1 158.37 157.87 158.87 0 0 0 0 0.23711 1 31800 31800 0.12286 0 1 13912 4621 9013 9016 14012 14012 -0.10706091442011711 ETDAHEVNE 9 Unmodified _ETDAHEVNE_ 0 0 0 REV__ENSG00000155115|ENST00000329970|GTF3C6 REV__ENSG00000155115|ENST00000329970|GTF3C6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2789306640625 2 522.217443 1042.42033 -0.1863 -9.7288E-05 0.685 0.00035772 0.4987 0.00026043 522.2176641878962 79.844 0.35674 76.334 76.083 76.44 -3.5102 14 9 2 0 0 0 0.79204 1 15559 15559 11.64 2.2572 1 1273500 + 13913 17208 9014 9017 14013 14013 -0.09918085834760859 ETDEDDDLQ 9 Unmodified _ETDEDDDLQ_ 0 0 0 ENSG00000124383|ENST00000244230|MPHOSPH10;MPHOSPH10|p.S307L|1|0.18|ENSG00000124383|chr2:71134099-71134099|C/T|missense_variant;MPHOSPH10|p.I371Lfs*4|1|0.28|ENSG00000124383|chr2:71138497-71138497|A/-|frameshift_variant;MPHOSPH10|p.P383Afs*26|1|0.39|ENSG00000124383|chr2:71138529-71138530|-/A|frameshift_variant ENSG00000124383|ENST00000244230|MPHOSPH10 ENSG00000124383|ENST00000244230|MPHOSPH10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.283935546875 2 540.204198 1078.39384 0.10272 5.5492E-05 1.1635 0.00062853 1.2662 0.00068402 540.204926922081 97.437 1.5101 93.517 93.126 94.636 -3.9194 132 43 4 0 0 0 0.55979 1 18681 18681 15.847 9.6414 1 145760000 13914 3313 9015 9018 14014 14014 -0.14221819516751566 ETDEDEESL 9 Unmodified _ETDEDEESL_ 0 0 0 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2764892578125 2 533.706573 1065.39859 0.59215 0.00031604 -0.0012853 -6.8596E-07 0.59087 0.00031535 534.2078188694554 114.61 0.21133 110.29 110.13 110.34 -4.3136 6 5 2 0 0 0 0.8319 1 22052 22052 7.9102 2.6795 1 609250 13915 7818 9016 9019 14015 14015 -0.13148935373965287 ETDGCNLRAC 10 Unmodified _ETDGCNLRAC_ 0 0 0 REV__ENST00000254657.7_1_2:239197002-239197146:-|nuORF REV__ENST00000254657.7_1_2:239197002-239197146:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.279052734375 2 541.223691 1080.43283 0.36847 0.00019943 1.2142 0.00065716 1.5827 0.00085658 541.2244645016102 101.2 0.74256 96.904 96.469 97.212 -4.297 35 21 3 0 0 0 0.90091 1 19399 19399 10.074 5.3179 1 1988600 + 13916 20122 9017 9020 14016 14016 -0.10417088967710697 ETDHSMEPV 9 Unmodified _ETDHSMEPV_ 0 0 0 REV__ENSG00000140481|ENST00000398814|CCDC33 REV__ENSG00000140481|ENST00000398814|CCDC33 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2597045898438 2 522.718764 1043.42298 -0.56123 -0.00029337 -1.9299 -0.0010088 -2.4912 -0.0013022 523.2185252226127 141.68 0.35226 136.69 136.45 136.8 -4.9877 10 9 2 0 0 0 0.65155 1 27260 27260 21.747 10.923 1 3010700 + 13917 16578 9018 9021 14017 14017 -0.0969995370144261 ETDKITLEV 9 Unmodified _ETDKITLEV_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6915283203125 2 524.282054 1046.54956 0.52714 0.00027637 -0.28211 -0.00014791 0.24503 0.00012846 524.2818294087347 100.47 0.75926 100.47 100.03 100.79 0 56 21 3 0 0 0 0.11519 1 19724 19724 45.74 7.7659 1 7040100 13918 2799 9019 9022 14018 14018 0.028142957953377845 ETDKITLEV 9 Unmodified _ETDKITLEV_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.701416015625 2 524.282054 1046.54956 -0.34095 -0.00017875 0.42717 0.00022396 0.086226 4.5207E-05 524.2821573116856 104.23 1.3488 100.01 99.689 101.04 -4.2183 87 38 4 0 0 0 0.14998 1 20534 20534 43.772 0 1 11746000 13919 2799 9019 9022 14019 14019 0.028142957953377845 ETDKITLEV 9 Unmodified _ETDKITLEV_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.282054 1046.54956 0.75529 0.00039598 -0.55931 -0.00029324 0.19598 0.00010275 524.2816566243584 104.22 1.4245 100.17 99.735 101.16 -4.0543 -0.15168 -0.000121 NaN 53.404 75 39 3 NaN NaN NaN NaN 0 NaN NaN 0 12195000 13920 2799 9019 9022 0.028142957953377845 ETDNNIVVY 9 Unmodified _ETDNNIVVY_ 0 0 0 ENSG00000150787|ENST00000280362|PTS ENSG00000150787|ENST00000280362|PTS ENSG00000150787|ENST00000280362|PTS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.268310546875 2 533.756204 1065.49785 0.21235 0.00011335 -0.30226 -0.00016133 -0.089905 -4.7987E-05 533.7559795331679 84.362 1.2262 84.362 83.823 85.049 0 117 34 5 0 0 0 0.02872 1 16441 16441 103.75 65.774 1 69629000 13921 4839 9020 9023 14020 14020 -0.03227447898552782 ETDNNIVVY 9 Unmodified _ETDNNIVVY_ 0 0 0 ENSG00000150787|ENST00000280362|PTS ENSG00000150787|ENST00000280362|PTS ENSG00000150787|ENST00000280362|PTS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.28466796875 2 533.756204 1065.49785 0.0022827 1.2184E-06 0.35069 0.00018718 0.35297 0.0001884 533.7563418215161 88.326 1.2868 84.533 83.981 85.268 -3.7926 123 35 5 0 0 0 0.02872 1 17326 17326 103.75 63.799 1 99670000 13922 4839 9020 9023 14021 14021 -0.03227447898552782 ETDNNIVVY 9 Unmodified _ETDNNIVVY_ 0 0 0 ENSG00000150787|ENST00000280362|PTS ENSG00000150787|ENST00000280362|PTS ENSG00000150787|ENST00000280362|PTS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28564453125 2 533.756204 1065.49785 0.72517 0.00038707 -0.25101 -0.00013398 0.47417 0.00025309 533.7560209416117 88.58 1.3474 84.585 84.047 85.395 -3.9953 136 38 5 0 0 0 0.02872 1 16837 16837 103.75 65.774 1 100410000 13923 4839 9020 9023 14022 14022 -0.03227447898552782 ETDNNIVVY 9 Unmodified _ETDNNIVVY_ 0 0 0 ENSG00000150787|ENST00000280362|PTS ENSG00000150787|ENST00000280362|PTS ENSG00000150787|ENST00000280362|PTS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.277099609375 2 533.756204 1065.49785 0.24584 0.00013122 0.2043 0.00010905 0.45014 0.00024026 533.7562665271015 88.303 1.3599 84.553 83.981 85.341 -3.7501 147 38 5 0 0 0 0.0038269 1 16865 16865 115.69 71.834 1 102900000 13924 4839 9020 9023 14023 14023 -0.03227447898552782 ETDPSTLGV 9 Unmodified _ETDPSTLGV_ 0 0 0 CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1 CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2386779785156 2 459.724372 917.434192 -0.22533 -0.00010359 0.35857 0.00016484 0.13324 6.1255E-05 459.72447153148244 71.609 0.66977 68.36 68.028 68.698 -3.2492 33 18 2 0 0 0 0.0036799 1 13963 13963 60.47 48.721 1 4209700 13925 734 9021 9024 14024 14024 -0.027828083356439492 ETDPSTLGV 9 Unmodified _ETDPSTLGV_ 0 0 0 CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1 CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2263488769531 2 459.724372 917.434192 0.24747 0.00011377 0.080823 3.7156E-05 0.32829 0.00015092 459.7243142078271 72.1 0.81372 68.472 68.024 68.838 -3.6275 40 22 2 0 0 0 0.1793 1 13575 13575 39.957 3.9131 1 1655800 13926 734 9021 9024 14025 14025 -0.027828083356439492 ETDSDLMSAL 10 Unmodified _ETDSDLMSAL_ 0 0 0 REV__ENSG00000130158|ENST00000294618|DOCK6 REV__ENSG00000130158|ENST00000294618|DOCK6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2798461914062 2 541.239529 1080.46451 -0.11122 -6.0198E-05 -0.083546 -4.5218E-05 -0.19477 -0.00010542 541.7401537343037 24.986 0.16948 23.132 22.981 23.15 -1.8534 5 4 2 0 0 0 0.81109 1 4057 4057 18.146 5.1039 1 145980 + 13927 15987 9022 9025 14026 14026 -0.07250817732779069 ETDTPAQL 8 Unmodified _ETDTPAQL_ 0 0 0 ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3 ENSG00000188612|ENST00000420826|SUMO2 ENSG00000188612|ENST00000420826|SUMO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23077392578125 2 437.711265 873.407977 0.011132 4.8726E-06 0.1364 5.9704E-05 0.14753 6.4576E-05 437.71127185274474 52.823 0.80563 49.736 49.442 50.248 -3.0876 36 22 2 0 0 0 0.44415 1 9723 9723 30.225 7.0764 1 1129800 13928 6941 9023 9026 14027 14027 -0.03379077507133843 ETDWVEYYR 9 Unmodified _ETDWVEYYR_ 0 0 0 REV__ENSG00000118017|ENST00000236709|A4GNT REV__ENSG00000118017|ENST00000236709|A4GNT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7779541015625 2 630.78021 1259.54587 NaN NaN NaN NaN NaN NaN NaN 39.133 1 36.691 36.191 37.191 -2.4419 0 0 0 0.23508 1 6981 6981 7.2892 0.56607 1 + 13929 15536 9024 9027 14028 14028 -0.07352373978528703 ETEAAIGAPP 10 Unmodified _ETEAAIGAPP_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7398986816406 2 478.24019 954.465826 -0.029096 -1.3915E-05 -0.048285 -2.3092E-05 -0.077381 -3.7007E-05 478.2401200365314 33.692 0.48225 31.375 31.148 31.63 -2.3175 20 13 2 0 0 0 0.71021 1 6157 6157 16.942 4.4107 1 1655900 13930 3631 9025 9028 14029 14029 -0.013228155817046172 ETEDSGKY 8 Unmodified _ETEDSGKY_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.G3718Afs*6|1|0.04|ENSG00000143341|chr1:186113995-186113995|G/-|frameshift_variant;HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16461181640625 3 310.134662 927.382156 NaN NaN NaN NaN NaN NaN NaN 53.036 1 50.152 49.652 50.652 -2.8837 0 0 0 0.23749 1 10100 10100 0.12286 0 1 13931 4474 9026 9029 14030 14030 -0.08443971749409229 ETEFFFFFFYF 11 Unmodified _ETEFFFFFFYF_ 0 0 0 REV__ENST00000538582.5_1_12:21590984-21591200:+|nuORF REV__ENST00000538582.5_1_12:21590984-21591200:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.681640625 3 524.235828 1569.68566 -0.11404 -5.9783E-05 3.9033 0.0020463 3.7893 0.0019865 524.5727984449373 124.66 0.14011 119.9 119.81 119.95 -4.7681 5 3 2 0 0 0 0.88981 1 23936 23936 0.50596 0.33396 1 972370 + 13932 22842 9027 9030 14031 14031 -0.07640009694000582 ETEGSTLHT 9 Unmodified _ETEGSTLHT_ 0 0 0 REV__ENST00000590781.1_1_19:12831693-12834404:-|nuORF REV__ENST00000590781.1_1_19:12831693-12834404:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 489.2021484375 2 487.724904 973.435254 0.14137 6.8949E-05 -0.56421 -0.00027518 -0.42285 -0.00020623 487.72458592637014 72.702 0.83521 72.702 72.371 73.206 0 57 23 3 0 0 0 0.46598 1 14133 14133 0.40827 0 1 23981000 + 13933 23327 9028 9031 14032 14032 -0.05252593966758923 ETEIRVVTV 9 Unmodified _ETEIRVVTV_ 0 0 0 ENST00000603247.1_1_13:98128238-98128670:+|nuORF ENST00000603247.1_1_13:98128238-98128670:+|nuORF ENST00000603247.1_1_13:98128238-98128670:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7008056640625 2 523.298039 1044.58152 -0.21821 -0.00011419 0.060771 3.1802E-05 -0.15744 -8.2386E-05 523.2980600634493 92.027 0.86515 88.102 87.581 88.446 -3.9251 65 24 4 0 0 0 0.66788 1 18068 18068 29.082 0 1 15160000 13934 11721 9029 9032 14033 14033 0.061017082691250835 ETEKDFSRY 9 Unmodified _ETEKDFSRY_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 587.7737426757812 2 587.772385 1173.53022 0.33393 0.00019628 -0.24269 -0.00014264 0.091245 5.3631E-05 587.7722103792761 35.257 1.0109 32.981 32.659 33.67 -2.2766 74 28 4 0 0 0 0.55539 1 6332 6332 16.149 2.2431 1 62413000 13935 190 9030 9033 14034 14034 -0.049606604955670264 ETEKDFSRY 9 Unmodified _ETEKDFSRY_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 587.772385 1173.53022 0.082223 4.8328E-05 -0.083415 -4.9029E-05 -0.0011924 -7.0084E-07 587.7723151185552 35.364 0.67594 32.97 32.67 33.346 -2.3938 0.00014207 0.00022045 NaN 16.149 69 18 5 NaN NaN NaN NaN 0 NaN NaN 0 74411000 13936 190 9030 9033 -0.049606604955670264 ETEKDFSRY 9 Unmodified _ETEKDFSRY_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 587.772385 1173.53022 0.52918 0.00031104 -0.46228 -0.00027171 0.066907 3.9326E-05 587.7720925802367 35.281 0.82921 33.028 32.708 33.538 -2.2527 0.057775 -0.00022491 NaN 16.149 73 23 5 NaN NaN NaN NaN 0 NaN NaN 0 62983000 13937 190 9030 9033 -0.049606604955670264 ETEKISEET 9 Unmodified _ETEKISEET_ 0 0 0 REV__ENST00000414671.1_1_9:74825668-74829777:+|nuORF REV__ENST00000414671.1_1_9:74825668-74829777:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2638549804688 2 533.250951 1064.48735 0.43199 0.00023036 -0.10581 -5.6424E-05 0.32618 0.00017394 533.2509890933263 46.038 1.1086 46.038 45.483 46.592 0 96 31 4 0 0 0 0.81703 1 8558 8558 10.074 2.7847 1 7385200 + 13938 15570 9031 9034 14035 14035 -0.042314753436585306 ETELNFRTA 9 Unmodified _ETELNFRTA_ 0 0 0 REV__ENST00000483516.1_1_3:193364860-193365959:+|nuORF REV__ENST00000483516.1_1_3:193364860-193365959:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2713012695312 2 540.769645 1079.52474 -0.03265 -1.7656E-05 -0.27426 -0.00014831 -0.30691 -0.00016597 540.7695847725439 66.063 0.48013 66.063 65.794 66.274 0 28 13 3 0 0 0 0.15214 1 12746 12746 43.858 3.6191 1 5875500 + 13939 19458 9032 9035 14036 14036 -0.011843392873515768 ETELNFRTA 9 Unmodified _ETELNFRTA_ 0 0 0 REV__ENST00000483516.1_1_3:193364860-193365959:+|nuORF REV__ENST00000483516.1_1_3:193364860-193365959:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2838134765625 2 540.769645 1079.52474 0.45002 0.00024336 -0.59083 -0.0003195 -0.14081 -7.6147E-05 540.7693817115686 69.663 0.48686 66.083 65.755 66.242 -3.5798 33 13 3 0 0 0 0.17935 1 13083 13083 39.95 10.109 1 5799300 + 13940 19458 9032 9035 14037 14037 -0.011843392873515768 ETELNFRTA 9 Unmodified _ETELNFRTA_ 0 0 0 REV__ENST00000483516.1_1_3:193364860-193365959:+|nuORF REV__ENST00000483516.1_1_3:193364860-193365959:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2705688476562 2 540.769645 1079.52474 0.42155 0.00022796 -0.40708 -0.00022014 0.014474 7.8269E-06 540.7694729742034 69.557 0.48455 66.167 65.809 66.294 -3.3903 31 13 3 0 0 0 0.11032 1 13170 13170 52.268 2.3353 1 4787600 + 13941 19458 9032 9035 14038 14038 -0.011843392873515768 ETELTEVHI 9 Unmodified _ETELTEVHI_ 0 0 0 REV__nc|ENSG00000140694|O95453-2|PARN REV__nc|ENSG00000140694|O95453-2|PARN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5567626953125 3 357.516995 1069.52915 NaN NaN NaN NaN NaN NaN NaN 17.603 1 16.089 15.589 16.589 -1.5148 0 0 0 0.22823 1 2564 2564 15.248 3.7538 1 + 13942 16592 9033 9036 14039 14039 -0.002828748644560619 ETELTKPNY 9 Unmodified _ETELTKPNY_ 0 0 0 OSMR|p.L838P|1|0.48|ENSG00000145623|chr5:38933017-38933017|T/C|missense_variant;OSMR|p.N900Tfs*3|1|0.34|ENSG00000145623|chr5:38933197-38933197|A/-|frameshift_variant;ENSG00000145623|ENST00000274276|OSMR OSMR|p.L838P|1|0.48|ENSG00000145623|chr5:38933017-38933017|T/C|missense_variant OSMR|p.L838P|1|0.48|ENSG00000145623|chr5:38933017-38933017|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7720947265625 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 100.26 1 95.967 95.467 96.467 -4.297 0 0 0 0.22621 1 19173 19173 15.847 1.0089 1 13943 4611 9034 9037 14040 14040 -0.01386874864465426 ETENWAEEA 9 Unmodified _ETENWAEEA_ 0 0 0 REV__nc|ENSG00000196535|Q92614-2|MYO18A REV__nc|ENSG00000196535|Q92614-2|MYO18A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20166015625 3 360.148971 1077.42508 NaN NaN NaN NaN NaN NaN NaN 140.77 1 135.79 135.29 136.29 -4.9877 0 0 0 0.23508 1 27099 27099 4.897 0.95262 1 + 13944 19257 9035 9038 14041 14041 -0.11053201691993308 ETENWRLE 8 Unmodified _ETENWRLE_ 0 0 0 ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF ENST00000520711.1_1_8:41368829-41369321:+|nuORF ENST00000520711.1_1_8:41368829-41369321:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26171875 2 538.753995 1075.49344 0.14646 7.8904E-05 -0.26932 -0.0001451 -0.12286 -6.6194E-05 538.7541804632008 18.611 1.0792 17.301 17.073 18.152 -1.3109 109 30 6 0 0 0 0.73936 1 3074 3074 8.5933 1.304 1 318750000 13945 9454 9036 9039 14042 14042 -0.04128912321448297 ETEPTHLPPG 10 Unmodified _ETEPTHLPPG_ 0 0 0 REV__LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant REV__LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2025146484375 3 359.845223 1076.51384 -0.27731 -9.9788E-05 -0.21315 -7.6702E-05 -0.49046 -0.00017649 359.84514708635317 19.616 1.3218 19.616 19.31 20.632 0 105 37 5 0 0 0 0.76269 1 3372 3372 1.7423 0 1 96955000 + 13946 16135 9037 9040 14043 14043 -0.021357416616638147 ETERFREL 8 Unmodified _ETERFREL_ 0 0 0 SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27587890625 2 540.277638 1078.54072 0.26467 0.00014299 -0.46201 -0.00024961 -0.19734 -0.00010662 540.2774411713946 131.5 1.0238 126.72 126.22 127.24 -4.7725 67 28 3 0 0 0 0.66265 1 25271 25271 18.135 1.0221 1 10315000 13947 4742 9038 9041 14044 14044 0.00459366949530704 ETERFRELLLY 11 Unmodified _ETERFRELLLY_ 0 0 0 SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2650146484375 3 490.264669 1467.77218 0.19149 9.3879E-05 0.14867 7.2888E-05 0.34016 0.00016677 490.26463603931563 142.03 0.55472 142.03 141.78 142.33 0 22 15 2 0 0 0 0.22786 4 28332 28281;28314;28332;28363 31.462 18.606 1 2607800 13948 4742 9039 9042 14045;14046;14047;14048 14047 0.057003698605967656 ETERFRELLLY 11 Unmodified _ETERFRELLLY_ 0 0 0 SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2690734863281 3 490.264669 1467.77218 0.1957 9.5947E-05 0.51435 0.00025217 0.71006 0.00034812 490.59905465407536 146.74 0.68578 142.06 141.61 142.29 -4.6868 31 19 2 0 0 0 0.12917 5 29083 29036;29083;29087;29133;29134 31.462 21.821 1 4544800 13949 4742 9039 9042 14049;14050;14051;14052;14053 14050 0.057003698605967656 ETERFRELLLY 11 Unmodified _ETERFRELLLY_ 0 0 0 SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2646179199219 3 490.264669 1467.77218 0.21076 0.00010333 -0.70648 -0.00034636 -0.49573 -0.00024304 490.2646531552811 147.13 0.48831 142.02 141.86 142.35 -5.1108 17 13 2 0 0 0 0.36112 4 28451 28451;28453;28497;28499 27.129 15.497 1 3136600 13950 4742 9039 9042 14054;14055;14056;14057 14054 0.057003698605967656 ETERFRELLLY 11 Unmodified _ETERFRELLLY_ 0 0 0 SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2646179199219 3 490.264669 1467.77218 NaN NaN NaN NaN NaN NaN NaN 146.95 1 141.95 141.45 142.45 -5 0 0 0 0.1871 1 28443 28443 21.59 16.187 1 13951 4742 9039 9042 14058 14058 0.057003698605967656 ETERVTGHY 9 Unmodified _ETERVTGHY_ 0 0 0 REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7781372070312 2 546.259445 1090.50434 0.24322 0.00013286 -0.092098 -5.031E-05 0.15113 8.2554E-05 546.259402413397 33.529 1.2895 31.382 30.828 32.118 -2.1468 114 36 5 0 0 0 0.60805 1 5924 5924 12.532 2.4576 1 58651000 + 13952 12940 9040 9043 14059 14059 -0.037295099471975846 ETERYKGP 8 Unmodified _ETERYKGP_ 0 0 0 ADAM11|p.G732S|1|0.14|ENSG00000073670|chr17:44778160-44778160|G/A|missense_variant;ENST00000587773.1_1_17:42854566-42857119:+|nuORF;ENSG00000073670|ENST00000200557|ADAM11 ADAM11|p.G732S|1|0.14|ENSG00000073670|chr17:44778160-44778160|G/A|missense_variant ADAM11|p.G732S|1|0.14|ENSG00000073670|chr17:44778160-44778160|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27587890625 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 92.962 1 88.971 88.471 89.471 -3.9907 0 0 0 0.21039 1 18210 18210 16.942 5.302 1 13953 51 9041 9044 14060 14060 -0.013039934875678227 ETESEDESR 9 Unmodified _ETESEDESR_ 0 0 0 REV__ENSG00000112118|ENST00000596288|MCM3 REV__ENSG00000112118|ENST00000596288|MCM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.81878662109375 3 361.147519 1080.42073 0.14312 5.1687E-05 -0.9331 -0.00033699 -0.78998 -0.0002853 361.1471499368642 83.851 0.28261 79.942 79.825 80.108 -3.9093 10 7 2 0 0 0 0.54058 1 15927 15927 12.241 9.7422 1 1021900 + 13954 15277 9042 9045 14061 14061 -0.11626710905557047 ETETKIETK 9 Unmodified _ETETKIETK_ 0 0 0 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.19183349609375 3 360.1924 1077.55537 NaN NaN NaN NaN NaN NaN NaN 117.58 1 113.07 112.57 113.57 -4.502 0 0 0 0.23508 1 23179 23179 4.897 0 1 13955 25903 9043 9046 14062 14062 0.019693943070024034 ETETSHQLKE 10 Unmodified _ETETSHQLKE_ 0 0 0 REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18 REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.279052734375 2 601.288399 1200.56225 0.48425 0.00029117 -1.8445 -0.0011091 -1.3602 -0.0008179 601.2874115892747 150 1.1898 144.8 144.47 145.66 -5.1994 60 33 3 0 0 0 0.71097 2 29044 29044;29101 10.074 0 1 5776500 + 13956 15691 9044 9047 14063;14064 14063 -0.030012928124278915 ETEVLPYLD 9 Unmodified _ETEVLPYLD_ 0 0 0 REV__THSD7B|p.A1522Sfs*2|1|0.16|ENSG00000144229|chr2:137663475-137663476|-/A|frameshift_variant REV__THSD7B|p.A1522Sfs*2|1|0.16|ENSG00000144229|chr2:137663475-137663476|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2018127441406 3 360.181612 1077.52301 NaN NaN NaN NaN NaN NaN NaN 58.349 1 58.349 57.849 58.849 0 0 0 0 0.23508 1 11164 11164 4.897 2.3985 1 + 13957 16774 9045 9048 14065 14065 -0.012653930960141224 ETEWDEAT 8 Unmodified _ETEWDEAT_ 0 0 0 REV__ENST00000479272.1_1_1:149906082-149907243:-|nuORF REV__ENST00000479272.1_1_1:149906082-149907243:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25469970703125 2 490.695812 979.377071 NaN NaN NaN NaN NaN NaN NaN 41.341 1 38.706 38.206 39.206 -2.6348 0 0 0 0.21486 1 7718 7718 9.3474 2.0582 1 + 13958 13956 9046 9049 14066 14066 -0.11344275612043475 ETEYAFSLD 9 Unmodified _ETEYAFSLD_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 538.1504516601562 2 537.734937 1073.45532 0.11911 6.4051E-05 4.3284 0.0023275 4.4475 0.0023916 538.2369494093776 33.682 0.82857 31.364 30.938 31.767 -2.3175 64 23 4 0 0 0 0.80521 1 6244 6244 10.824 8.7379 1 3896400 13959 2454 9047 9050 14067 14067 -0.07846843026800343 ETEYAFSLD 9 Unmodified _ETEYAFSLD_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 537.734937 1073.45532 0.47065 0.00025309 3.7036 0.0019916 4.1743 0.0022446 538.2369622130755 33.598 0.7677 31.383 31.044 31.812 -2.2158 0.0091186 -0.0002469 NaN 10.824 63 21 4 NaN NaN NaN NaN 0 NaN NaN 0 2947000 13960 2454 9047 9050 -0.07846843026800343 ETEYFIFE 8 Unmodified _ETEYFIFE_ 0 0 0 REV__CCR3|p.K234Sfs*52|1|0.35|ENSG00000183625|chr3:46265852-46265852|A/-|frameshift_variant REV__CCR3|p.K234Sfs*52|1|0.35|ENSG00000183625|chr3:46265852-46265852|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013244628906 3 359.830691 1076.47024 -0.26789 -9.6395E-05 1.4041 0.00050525 1.1362 0.00040886 359.8312316968617 93.083 0.8588 89.093 88.968 89.827 -3.9907 31 24 2 0 0 0 1.0248 1 18329 18329 3.5965 1.098 1 1240100 + 13961 13313 9048 9051 14068 14068 -0.06493351158792393 ETEYFVRC 8 Unmodified _ETEYFVRC_ 0 0 0 nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000158623|ENST00000425248|COPG2 nc|ENSG00000158623|Q9UBF2-2|COPG2 nc|ENSG00000158623|Q9UBF2-2|COPG2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6815185546875 2 523.734217 1045.45388 NaN NaN NaN NaN NaN NaN NaN 46.894 1 43.952 43.452 44.452 -2.9421 0 0 0 0.23025 1 8533 8533 0.25148 0 1 13962 5173 9049 9052 14069 14069 -0.06702755596529641 ETFCVVAPP 9 Unmodified _ETFCVVAPP_ 0 0 0 ENST00000236147.4_1_1:169660781-169660883:-|nuORF ENST00000236147.4_1_1:169660781-169660883:-|nuORF ENST00000236147.4_1_1:169660781-169660883:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.765380859375 2 481.736228 961.457904 NaN NaN NaN NaN NaN NaN NaN 15.937 1 14.715 14.215 15.215 -1.2219 0 0 0 0.23508 1 2266 2266 4.756 2.1785 1 13963 8168 9050 9053 14070 14070 -0.024366661028466297 ETFDRKHY 8 Unmodified _ETFDRKHY_ 0 0 0 REV__nc|ENSG00000185418|A2RTX5-2|TARS3 REV__nc|ENSG00000185418|A2RTX5-2|TARS3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7816162109375 2 548.26453 1094.51451 -0.11612 -6.3667E-05 0.91006 0.00049895 0.79393 0.00043529 548.264804952438 22.023 0.23805 20.57 20.458 20.697 -1.4535 9 6 2 0 0 0 1.0095 1 3512 3512 5.7604 0 1 443770 + 13964 18966 9051 9054 14071 14071 -0.028969022219371254 ETFEDVFSDR 10 Unmodified _ETFEDVFSDR_ 0 0 0 ENST00000588524.5_1_19:11687529-11687667:-|nuORF;ENSG00000102575|ENST00000648477|ACP5 ENST00000588524.5_1_19:11687529-11687667:-|nuORF ENST00000588524.5_1_19:11687529-11687667:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7754516601562 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 107.5 1 107.5 107 108 0 0 0 0 2.8426 1 21139 21139 0.26539 0 1 13965 2138 9052 9055 14072 14072 -0.07632981703773112 ETFFEMDY 8 Unmodified _ETFFEMDY_ 0 0 0 UGCG|p.L76M|1|0.32|ENSG00000148154|chr9:111914732-111914732|T/A|missense_variant UGCG|p.L76M|1|0.32|ENSG00000148154|chr9:111914732-111914732|T/A|missense_variant UGCG|p.L76M|1|0.32|ENSG00000148154|chr9:111914732-111914732|T/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2798461914062 2 541.212783 1080.41101 0.12618 6.8291E-05 -0.43091 -0.00023321 -0.30473 -0.00016492 541.2125387891648 25.123 0.34849 23.589 23.367 23.716 -1.5342 12 9 2 0 0 0 1.0095 1 4076 4076 10.183 2.8942 1 311190 13966 26547 9053 9056 14073 14073 -0.12597570444631856 ETFFEMDY 8 Unmodified _ETFFEMDY_ 0 0 0 UGCG|p.L76M|1|0.32|ENSG00000148154|chr9:111914732-111914732|T/A|missense_variant UGCG|p.L76M|1|0.32|ENSG00000148154|chr9:111914732-111914732|T/A|missense_variant UGCG|p.L76M|1|0.32|ENSG00000148154|chr9:111914732-111914732|T/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.212783 1080.41101 0.32874 0.00017792 -0.24177 -0.00013085 0.086973 4.7071E-05 541.2124258657408 23.574 0.4205 23.574 23.338 23.758 0 -0.007645 0.00012057 NaN 10.183 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 889330 13967 26547 9053 9056 -0.12597570444631856 ETFFGRLS 8 Unmodified _ETFFGRLS_ 0 0 0 REV__ZNF18|p.H426Sfs*40|1|0.31|ENSG00000154957|chr17:11978331-11978332|-/A|frameshift_variant REV__ZNF18|p.H426Sfs*40|1|0.31|ENSG00000154957|chr17:11978331-11978332|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7230529785156 2 478.745442 955.476331 0.033101 1.5847E-05 0.5096 0.00024397 0.5427 0.00025982 478.7454130665864 77.959 0.60179 74.3 74.058 74.66 -3.6588 27 16 2 0 0 0 0.52597 1 14877 14877 26.884 2.8631 1 1291400 + 13968 17204 9054 9057 14074 14074 -0.003187881366102374 ETFHVGLPG 9 Unmodified _ETFHVGLPG_ 0 0 0 nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3;ENST00000528705.1_1_19:17950262-17953325:-|nuORF;ENST00000526008.5_1_19:17949989-17958765:-|nuORF;nc|ENSG00000105639|P52333-4|JAK3;ENST00000527031.5_1_19:17947866-17955268:-|nuORF nc|ENSG00000105639|P52333-2|JAK3 nc|ENSG00000105639|P52333-2|JAK3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7222900390625 2 478.745442 955.476331 NaN NaN NaN NaN NaN NaN NaN 77.874 1 74.107 73.607 74.607 -3.7664 0 0 0 0.23411 1 14758 14758 13.508 2.684 1 13969 2324 9055 9058 14075 14075 -0.0031878813659886873 ETFHVGLPG 9 Unmodified _ETFHVGLPG_ 0 0 0 nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3;ENST00000528705.1_1_19:17950262-17953325:-|nuORF;ENST00000526008.5_1_19:17949989-17958765:-|nuORF;nc|ENSG00000105639|P52333-4|JAK3;ENST00000527031.5_1_19:17947866-17955268:-|nuORF nc|ENSG00000105639|P52333-2|JAK3 nc|ENSG00000105639|P52333-2|JAK3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7438659667969 2 478.745442 955.476331 NaN NaN NaN NaN NaN NaN NaN 78.496 1 74.692 74.192 75.192 -3.8048 0 0 0 0.23411 1 14888 14888 13.508 0 1 13970 2324 9055 9058 14076 14076 -0.0031878813659886873 ETFKKRGP 8 Unmodified _ETFKKRGP_ 0 0 0 REV__ENST00000483991.5_1_9:138702463-138702953:-|nuORF REV__ENST00000483991.5_1_9:138702463-138702953:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7730712890625 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 94.365 1 90.18 89.68 90.68 -4.1847 0 0 0 0.21486 1 17998 17998 9.3474 2.0582 1 + 13971 22207 9056 9059 14077 14077 0.05220893508658264 ETFLVLQSLLE 11 Unmodified _ETFLVLQSLLE_ 0 0 0 ENSG00000112039|ENST00000229769|FANCE ENSG00000112039|ENST00000229769|FANCE ENSG00000112039|ENST00000229769|FANCE MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 431.0934143066406 3 431.242983 1290.70712 0.036965 1.5941E-05 0.39485 0.00017028 0.43182 0.00018622 431.24313564200935 28.028 0.41608 26.031 25.822 26.238 -1.9962 20 11 3 0 0 0 0.96216 1 4684 4684 0.45452 0 1 1190500 13972 2664 9057 9060 14078 14078 0.0733937533475455 ETFPNSWY 8 Unmodified _ETFPNSWY_ 0 0 0 nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1;nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;NAALADL1|p.T687Rfs*4|1|0.25|ENSG00000168060|chr11:65045434-65045434|G/-|frameshift_variant;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1 nc|ENSG00000168060|Q9UQQ1-5|NAALADL1 nc|ENSG00000168060|Q9UQQ1-5|NAALADL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2787475585938 2 522.227082 1042.43961 -0.28785 -0.00015032 -0.0029821 -1.5573E-06 -0.29083 -0.00015188 522.2272302717691 47.707 0.52543 44.838 44.6 45.125 -2.869 22 14 2 0 0 0 1.0191 1 9069 9069 8.5933 0 1 1044900 13973 5874 9058 9061 14079 14079 -0.0799108475318917 ETFSYYYCFFA 11 Unmodified _ETFSYYYCFFA_ 0 0 0 REV__ENST00000351773.7_1_10:38407933-38408194:+|nuORF REV__ENST00000351773.7_1_10:38407933-38408194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2472229003906 3 480.865407 1439.57439 NaN NaN NaN NaN NaN NaN NaN 17.344 1 16.033 15.533 16.533 -1.3109 0 0 0 0.23698 1 2773 2773 0.50596 0.051438 1 + 13974 20770 9059 9062 14080 14080 -0.12781392393617352 ETGEEVTHY 9 Unmodified _ETGEEVTHY_ 0 0 0 CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant;ENSG00000124177|ENST00000373233|CHD6;CHD6|p.N481Tfs*10|1|0.23|ENSG00000124177|chr20:41490016-41490016|T/-|frameshift_variant;nc|ENSG00000124177|Q8TD26-3|CHD6 CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2818603515625 2 532.730186 1063.44582 0.58281 0.00031048 -0.7512 -0.00040019 -0.16839 -8.9708E-05 532.7292513932616 64.117 0.35042 60.701 60.529 60.879 -3.4158 12 9 2 0 0 0 0.72864 1 12011 12011 16.942 0 1 639080 13975 516 9060 9063 14081 14081 -0.08336611312302011 ETGGAAKK 8 Unmodified _ETGGAAKK_ 0 0 0 REV__ENST00000515388.1_1_4:144312653-144316050:+|nuORF REV__ENST00000515388.1_1_4:144312653-144316050:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2100524902344 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 112.16 1 112.16 111.66 112.66 0 0 0 0 0.23749 1 22067 22067 0.063987 0.055711 1 + 13976 22587 9061 9064 14082 14082 0.018129672835243582 ETGGGGQN 8 Unmodified _ETGGGGQN_ 0 0 0 nc|ENSG00000167612|Q7Z3H0-1|ANKRD33 nc|ENSG00000167612|Q7Z3H0-1|ANKRD33 nc|ENSG00000167612|Q7Z3H0-1|ANKRD33 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.150390625 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 34.973 1 32.697 32.197 33.197 -2.2766 0 0 0 0.21486 1 6143 6143 0.79363 0 1 13977 12446 9062 9065 14083 14083 -0.0822164606104252 ETGGHLEM 8 Unmodified _ETGGHLEM_ 0 0 0 REV__ENST00000582363.1_1_18:5240196-5240277:+|nuORF REV__ENST00000582363.1_1_18:5240196-5240277:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21697998046875 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 67.911 1 64.802 64.302 65.302 -3.1086 0 0 0 0.21452 1 13177 13177 13.508 0 1 + 13978 23249 9063 9066 14084 14084 -0.07147286693441401 ETGGLKDTV 9 Unmodified _ETGGLKDTV_ 0 0 0 tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1 tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1 tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2397155761719 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 79.49 1 75.814 75.314 76.314 -3.676 0 0 0 0.097865 1 15146 15146 4.477 0 1 13979 26251 9064 9067 14085 14085 0.0033318441827532297 ETGGLKDTV 9 Unmodified _ETGGLKDTV_ 0 0 0 tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1 tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1 tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23956298828125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 79.737 1 76.061 75.561 76.561 -3.676 0 0 0 0.097865 1 15196 15196 4.477 0 1 13980 26251 9064 9067 14086 14086 0.0033318441827532297 ETGGMASP 8 Unmodified _ETGGMASP_ 0 0 0 REV__ENST00000563000.5_1_15:45879846-45897630:+|nuORF REV__ENST00000563000.5_1_15:45879846-45897630:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.22100830078125 2 375.160354 748.306154 NaN NaN NaN NaN NaN NaN NaN 33.466 1 31.148 30.648 31.648 -2.3175 0 0 0 0.21486 1 6119 6119 9.3474 0 1 + 13981 23071 9065 9068 14087 14087 -0.07806647130541933 ETGGVTAFHY 10 Unmodified _ETGGVTAFHY_ 0 0 0 ENST00000376566.8_1_X:48755271-48755857:+|nuORF;ENST00000472742.5_1_X:48755271-48760011:+|nuORF ENST00000376566.8_1_X:48755271-48755857:+|nuORF ENST00000376566.8_1_X:48755271-48755857:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2787475585938 2 541.251089 1080.48762 NaN NaN NaN NaN NaN NaN NaN 117.28 1 112.92 112.42 113.42 -4.3585 0 0 0 0.22569 1 22574 22574 15.847 1.0089 1 13982 9253 9066 9069 14088 14088 -0.049400108331155934 ETGHIRKLQ 9 Unmodified _ETGHIRKLQ_ 0 0 0 ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant;SPTBN5|p.R482Afs*7|1|0.21|ENSG00000137877|chr15:41885811-41885812|-/C|frameshift_variant ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2640991210938 2 541.309272 1080.60399 NaN NaN NaN NaN NaN NaN NaN 93.485 1 93.485 92.985 93.985 0 0 0 0 0.23508 1 18292 18292 11.64 2.8949 1 13983 4125 9067 9070 14089 14089 0.06691352457414723 ETGPVAWR 8 Unmodified _ETGPVAWR_ 0 0 0 REV__ENST00000560634.1_1_15:84865513-84865773:+|nuORF REV__ENST00000560634.1_1_15:84865513-84865773:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2381896972656 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 67.294 1 64.185 63.685 64.685 -3.1086 0 0 0 0.19492 1 13051 13051 26.341 5.4701 1 + 13984 23041 9068 9071 14090 14090 0.00036345066178000707 ETGPVAWR 8 Unmodified _ETGPVAWR_ 0 0 0 REV__ENST00000560634.1_1_15:84865513-84865773:+|nuORF REV__ENST00000560634.1_1_15:84865513-84865773:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23907470703125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 67.552 1 64.443 63.943 64.943 -3.1086 0 0 0 0.20896 1 13102 13102 18.135 4.6271 1 + 13985 23041 9068 9071 14091 14091 0.00036345066178000707 ETGPVAWR 8 Unmodified _ETGPVAWR_ 0 0 0 REV__ENST00000560634.1_1_15:84865513-84865773:+|nuORF REV__ENST00000560634.1_1_15:84865513-84865773:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23822021484375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 67.627 1 64.131 63.631 64.631 -3.4965 0 0 0 0.2074 1 12692 12692 19.439 1.304 1 + 13986 23041 9068 9071 14092 14092 0.00036345066178000707 ETGRETKY 8 Unmodified _ETGRETKY_ 0 0 0 ENSG00000165632|ENST00000344293|TAF3 ENSG00000165632|ENST00000344293|TAF3 ENSG00000165632|ENST00000344293|TAF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 493.2479248046875 2 492.243264 982.471974 0.031288 1.5401E-05 -0.067625 -3.3288E-05 -0.036338 -1.7887E-05 492.2431865055231 47.403 0.93778 44.534 44.116 45.053 -2.869 75 26 4 0 0 0 0.69887 1 8913 8913 14.582 2.0501 1 25474000 13987 5645 9069 9072 14093 14093 -0.019962973501833403 ETGRETKY 8 Unmodified _ETGRETKY_ 0 0 0 ENSG00000165632|ENST00000344293|TAF3 ENSG00000165632|ENST00000344293|TAF3 ENSG00000165632|ENST00000344293|TAF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 492.243264 982.471974 0.47471 0.00023367 -0.27809 -0.00013689 0.19661 9.6781E-05 492.2430814864813 44.498 0.89893 44.498 44.124 45.023 0 -0.058634 -0.00021717 NaN 14.582 70 25 4 NaN NaN NaN NaN 0 NaN NaN 0 21724000 13988 5645 9069 9072 -0.019962973501833403 ETGRETKY 8 Unmodified _ETGRETKY_ 0 0 0 ENSG00000165632|ENST00000344293|TAF3 ENSG00000165632|ENST00000344293|TAF3 ENSG00000165632|ENST00000344293|TAF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 492.243264 982.471974 0.045073 2.2187E-05 -0.11941 -5.8776E-05 -0.074332 -3.659E-05 492.24314762603547 47.516 1.5672 44.574 43.684 45.252 -2.9421 0.017401 -6.0946E-05 NaN 14.582 98 44 4 NaN NaN NaN NaN 0 NaN NaN 0 24549000 13989 5645 9069 9072 -0.019962973501833403 ETGRETKY 8 Unmodified _ETGRETKY_ 0 0 0 ENSG00000165632|ENST00000344293|TAF3 ENSG00000165632|ENST00000344293|TAF3 ENSG00000165632|ENST00000344293|TAF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 492.243264 982.471974 -0.31196 -0.00015356 0.25268 0.00012438 -0.059279 -2.918E-05 492.24334238317874 47.57 1.1732 44.621 44.017 45.19 -2.9499 0.063768 0.00030537 NaN 14.582 98 33 4 NaN NaN NaN NaN 0 NaN NaN 0 17460000 13990 5645 9069 9072 -0.019962973501833403 ETGRYPAY 8 Unmodified _ETGRYPAY_ 0 0 0 ENST00000474125.6_1_10:102771704-102781716:-|nuORF;nc|ENSG00000186862|Q9H5P4-2|PDZD7;nc|ENSG00000186862|Q9H5P4-1|PDZD7;ENSG00000186862|ENST00000619208|PDZD7 ENST00000474125.6_1_10:102771704-102781716:-|nuORF;ENSG00000186862|ENST00000619208|PDZD7 ENST00000474125.6_1_10:102771704-102781716:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72662353515625 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 39.856 1 37.307 36.807 37.807 -2.5491 0 0 0 0.21323 1 7414 7414 14.582 1.0738 1 13991 10252;7078 9070 9073 14094 14094 -0.039556650333452126 ETGVPWRA 8 Unmodified _ETGVPWRA_ 0 0 0 nc|ENSG00000111877|Q9NXL9-4|MCM9;ENSG00000111877|ENST00000619706|MCM9;MCM9|p.R822Gfs*2|1|0.5|ENSG00000111877|chr6:118815792-118815792|T/-|frameshift_variant nc|ENSG00000111877|Q9NXL9-4|MCM9 nc|ENSG00000111877|Q9NXL9-4|MCM9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.238525390625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 64.658 1 64.658 64.158 65.158 0 0 0 0 0.21486 1 12450 12450 11.64 2.2929 1 13992 2655 9071 9074 14095 14095 0.00036345066178000707 ETGVPWRA 8 Unmodified _ETGVPWRA_ 0 0 0 nc|ENSG00000111877|Q9NXL9-4|MCM9;ENSG00000111877|ENST00000619706|MCM9;MCM9|p.R822Gfs*2|1|0.5|ENSG00000111877|chr6:118815792-118815792|T/-|frameshift_variant nc|ENSG00000111877|Q9NXL9-4|MCM9 nc|ENSG00000111877|Q9NXL9-4|MCM9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23907470703125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 111.13 1 106.91 106.41 107.41 -4.2289 0 0 0 0.21452 1 21386 21386 13.508 0.97634 1 13993 2655 9071 9074 14096 14096 0.00036345066178000707 ETHRLPRPR 9 Unmodified _ETHRLPRPR_ 0 0 0 nc|ENSG00000100987|Q9NZR4-7|VSX1 nc|ENSG00000100987|Q9NZR4-7|VSX1 nc|ENSG00000100987|Q9NZR4-7|VSX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71832275390625 3 387.891501 1160.65267 -0.55913 -0.00021688 0.3942 0.00015291 -0.16493 -6.3975E-05 387.89163200688495 16.764 0.62877 15.548 15.182 15.811 -1.2159 31 17 2 0 0 0 0.8799 1 2698 2698 0.96228 0 1 267390 13994 12259 9072 9075 14097 14097 0.07877265817182888 ETHRQTHTGEL 11 Unmodified _ETHRQTHTGEL_ 0 0 0 ENST00000541602.5_1_11:113934022-114057819:+|nuORF ENST00000541602.5_1_11:113934022-114057819:+|nuORF ENST00000541602.5_1_11:113934022-114057819:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21661376953125 3 436.881219 1307.62183 0.02693 1.1765E-05 -1.8161 -0.00079344 -1.7892 -0.00078168 437.21590710387113 99.411 0.61842 95.455 95.071 95.689 -3.9564 22 17 2 0 0 0 0.79196 1 19104 19104 4.7159 0.30977 1 760010 13995 11079 9073 9076 14098 14098 -0.019679770783795902 ETHRQTHTGEL 11 Unmodified _ETHRQTHTGEL_ 0 0 0 ENST00000541602.5_1_11:113934022-114057819:+|nuORF ENST00000541602.5_1_11:113934022-114057819:+|nuORF ENST00000541602.5_1_11:113934022-114057819:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2166748046875 3 436.881219 1307.62183 0.26413 0.00011539 -1.1356 -0.00049613 -0.87148 -0.00038073 437.2162070348492 101.84 1.5946 97.821 96.893 98.488 -4.0212 55 45 2 0 0 0 0.79196 1 19468 19468 4.7159 0 1 1033100 13996 11079 9073 9076 14099 14099 -0.019679770783795902 ETIAKLVKY 9 Unmodified _ETIAKLVKY_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2693481445312 2 532.82115 1063.62775 -0.10176 -5.4217E-05 0.45832 0.0002442 0.35656 0.00018998 532.8215533498897 41.807 0.31429 39.172 38.947 39.262 -2.6348 14 8 2 0 0 0 0.86532 1 7769 7769 8.5933 0 1 626370 13997 7447 9074 9077 14100 14100 0.0984777317123644 ETIANIHPGSL 11 Unmodified _ETIANIHPGSL_ 0 0 0 REV__ENSG00000081985|ENST00000674203|IL12RB2 REV__ENSG00000081985|ENST00000674203|IL12RB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3360595703125 2 576.306395 1150.59824 0.0087925 5.0672E-06 -0.052366 -3.0179E-05 -0.043574 -2.5112E-05 576.3063781214914 77.519 0.95798 74.056 73.542 74.5 -3.4633 72 26 4 0 0 0 0.57511 1 15218 15218 19.362 3.2128 1 13317000 + 13998 14434 9075 9078 14101 14101 0.02896209155096585 ETIARYVQ 8 Unmodified _ETIARYVQ_ 0 0 0 REV__ZSCAN20|p.A361T|1|0.1|ENSG00000121903|chr1:33491339-33491339|G/A|missense_variant REV__ZSCAN20|p.A361T|1|0.1|ENSG00000121903|chr1:33491339-33491339|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2653503417969 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 105.26 1 100.89 100.39 101.39 -4.3764 0 0 0 0.22684 1 20178 20178 1.3295 0 1 + 13999 25597 9076 9079 14102 14102 0.023328834091330464 ETIFRHGGY 9 Unmodified _ETIFRHGGY_ 0 0 0 REV__ENSG00000184005|ENST00000328299|ST6GALNAC3 REV__ENSG00000184005|ENST00000328299|ST6GALNAC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2798461914062 2 540.267073 1078.51959 0.15581 8.4178E-05 -0.1722 -9.3034E-05 -0.016393 -8.8565E-06 540.2669570878548 25.093 0.59025 23.559 23.195 23.786 -1.5342 41 16 4 0 0 0 0.60805 1 4076 4076 12.532 2.4576 1 4176200 + 14000 18877 9077 9080 14103 14103 -0.016525983593282945 ETIGKKLPA 9 Unmodified _ETIGKKLPA_ 0 0 0 nc|ENSG00000147010|Q96B97-3|SH3KBP1 nc|ENSG00000147010|Q96B97-3|SH3KBP1 nc|ENSG00000147010|Q96B97-3|SH3KBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23211669921875 2 478.792392 955.570232 -0.021965 -1.0517E-05 -0.011506 -5.509E-06 -0.033471 -1.6026E-05 478.7923596955135 91.816 0.96789 87.891 87.406 88.374 -3.9251 103 27 5 0 0 0 0.6329 1 17967 17967 10.824 2.9138 1 91893000 14001 12373 9078 9081 14104 14104 0.09066930965650499 ETIIYFPP 8 Unmodified _ETIIYFPP_ 0 0 0 REV__ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant REV__ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2536926269531 2 490.260394 978.506234 NaN NaN NaN NaN NaN NaN NaN 100.1 1 100.1 99.602 100.6 0 0 0 0 0.21486 1 19637 19637 9.3474 0 1 + 14002 12907 9079 9082 14105 14105 0.016121508087167058 ETILKTMLE 9 Oxidation (M) _ETILKTM(Oxidation (M))LE_ ETILKTM(1)LE ETILKTM(72)LE 0 0 1 REV__ENSG00000165084|ENST00000518698|C8orf34 REV__ENSG00000165084|ENST00000518698|C8orf34 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7709350585938 2 547.294107 1092.57366 0.74314 0.00040672 3.0941 0.0016934 3.8372 0.0021001 547.29646829571 101.06 0.46342 101.06 100.83 101.29 0 26 12 3 0 0 0 0.04795 1 19849 19849 71.922 11.848 1 3998500 + 14003 17738 9080 9083 14106 14106 124 0.031078129573415936 ETILRWTY 8 Unmodified _ETILRWTY_ 0 0 0 tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1 tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1 tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2799682617188 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 121.76 1 117.21 116.71 117.71 -4.5476 0 0 0 0.21039 1 23998 23998 16.942 1.0951 1 14004 26025 9081 9084 14107 14107 0.023337429602634074 ETIPPAASPP 10 Unmodified _ETIPPAASPP_ 0 0 0 NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant;nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;ENSG00000188158|ENST00000676302|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2580261230469 2 490.258382 978.502212 0.21081 0.00010335 0.27233 0.00013351 0.48314 0.00023686 490.25781803439827 116.61 0.73523 112.13 111.72 112.46 -4.486 34 20 3 0 0 0 0.59928 1 23023 23023 19.257 4.6753 1 1376600 14005 7154 9082 9085 14108 14108 0.012100613149868877 ETIQDLIF 8 Unmodified _ETIQDLIF_ 0 0 0 REV__ENST00000482694.1_1_2:85577073-85578124:-|nuORF REV__ENST00000482694.1_1_2:85577073-85578124:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26385498046875 2 489.760758 977.506963 -0.027329 -1.3385E-05 0.77266 0.00037842 0.74534 0.00036504 489.76080246851734 62.363 0.69323 59.123 58.69 59.383 -3.2395 40 19 3 0 0 0 8448 1 11671 11671 0.68139 0 1 1994200 + 14006 14052 9083 9086 14109 14109 0.017309454577684846 ETIYNPDYY 9 Unmodified _ETIYNPDYY_ 0 0 0 ENSG00000171806|ENST00000310392|METTL18 ENSG00000171806|ENST00000310392|METTL18 ENSG00000171806|ENST00000310392|METTL18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2515258789062 2 589.256037 1176.49752 0.61981 0.00036522 -0.28849 -0.00017 0.33131 0.00019523 589.2574706715853 85.466 0.62899 81.557 81.217 81.846 -3.9093 43 17 3 0 0 0 0.5059 1 16201 16201 19.257 0 1 3413000 14007 6173 9084 9087 14110 14110 -0.08366867618428842 ETKDVKKKC 9 Unmodified _ETKDVKKKC_ 0 0 0 nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2 nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 3 360.202353 1077.58523 NaN NaN NaN NaN NaN NaN NaN 107.17 1 107.17 106.67 107.67 0 0 0 0 0.23508 1 21072 21072 4.1895 1.4543 1 14008 5965 9085 9088 14111 14111 0.04954054771360461 ETKGDGAAPA 10 Unmodified _ETKGDGAAPA_ 0 0 0 REV__ENSG00000153187|ENST00000640218|HNRNPU REV__ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2333984375 2 458.722164 915.429775 0.19619 8.9999E-05 0.28593 0.00013116 0.48212 0.00022116 458.7222272334418 18.417 0.38628 18.417 18.23 18.616 0 22 10 3 0 0 0 0.6817 1 2927 2927 13.042 0.80181 1 5776700 + 14009 17139 9086 9089 14112 14112 -0.03132272758580257 ETKGFHQVP 9 Unmodified _ETKGFHQVP_ 0 0 0 nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000470113.2_1_3:49135784-49136686:-|nuORF nc|ENSG00000172053|P47897-2|QARS1 nc|ENSG00000172053|P47897-2|QARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2816772460938 2 521.769448 1041.52434 -0.49065 -0.00025601 0.27991 0.00014605 -0.21074 -0.00010996 521.7695702072854 33.089 0.7375 30.942 30.655 31.393 -2.1468 39 20 2 0 0 0 0.62102 1 5791 5791 11.64 0.81637 1 2954500 14010 6190 9087 9090 14113 14113 0.005242857834218739 ETKKQSFKQ 9 Unmodified _ETKKQSFKQ_ 0 0 0 nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant nc|ENSG00000001626|P13569-2|CFTR nc|ENSG00000001626|P13569-2|CFTR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2094421386719 3 375.208384 1122.60332 NaN NaN NaN NaN NaN NaN NaN 31.198 1 29.05 28.55 29.55 -2.1483 0 0 0 0.19673 1 5367 5367 0.87518 0 1 14011 958 9088 9091 14114 14114 0.04692513017721467 ETKKSASR 8 Unmodified _ETKKSASR_ 0 0 0 REV__ENSG00000156869|ENST00000646001|FRRS1 REV__ENSG00000156869|ENST00000646001|FRRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7533264160156 2 453.753798 905.493044 0.27955 0.00012685 -1.3338 -0.00060521 -1.0542 -0.00047836 453.75328950455247 29.276 0.49458 27.383 27.123 27.617 -1.8928 18 13 2 0 0 0 0.74398 1 4992 4992 7.9102 0 1 557410 + 14012 17273 9089 9092 14115 14115 0.03651712749331182 ETKKSASR 8 Unmodified _ETKKSASR_ 0 0 0 REV__ENSG00000156869|ENST00000646001|FRRS1 REV__ENSG00000156869|ENST00000646001|FRRS1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.753798 905.493044 0.42678 0.00019365 -1.8624 -0.00084508 -1.4356 -0.00065143 453.7530870201892 29.383 0.48722 27.309 27.102 27.59 -2.0743 -0.026704 -0.00027441 NaN 7.9102 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 298320 + 14013 17273 9089 9092 0.03651712749331182 ETKKVAFQQ 9 Unmodified _ETKKVAFQQ_ 0 0 0 ENST00000515578.5_1_4:420284-429666:-|nuORF ENST00000515578.5_1_4:420284-429666:-|nuORF ENST00000515578.5_1_4:420284-429666:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 111.45 1 111.45 110.95 111.95 0 0 0 0 0.23508 1 21923 21923 2.4985 0.21571 1 14014 10789 9090 9093 14116 14116 0.046171279889904326 ETKNQTIFTY 10 Unmodified _ETKNQTIFTY_ 0 0 0 tr|U7SHB3|U7SHB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02186PE=4SV=1 tr|U7SHB3|U7SHB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02186PE=4SV=1 tr|U7SHB3|U7SHB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02186PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7586059570312 2 622.81151 1243.60847 0.31057 0.00019343 -0.030174 -1.8793E-05 0.2804 0.00017463 622.8114635073714 98.369 0.98053 94.412 93.99 94.97 -3.9564 94 28 5 0 0 0 0.53552 1 18801 18801 22.736 4.5899 1 49600000 14015 25914 9091 9094 14117 14117 -0.0035922791032589885 ETKQKELS 8 Unmodified _ETKQKELS_ 0 0 0 ENST00000340533.8_2_18:71920602-71920758:-|nuORF ENST00000340533.8_2_18:71920602-71920758:-|nuORF ENST00000340533.8_2_18:71920602-71920758:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77252197265625 2 481.761289 961.508025 NaN NaN NaN NaN NaN NaN NaN 45.07 1 42.205 41.705 42.705 -2.8653 0 0 0 0.21486 1 8176 8176 10.824 0.64053 1 14016 8848 9092 9095 14118 14118 0.025731598266588662 ETKRPQTLL 9 Unmodified _ETKRPQTLL_ 0 0 0 REV__ENSG00000131126|ENST00000598265|TEX101 REV__ENSG00000131126|ENST00000598265|TEX101 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 362.54901123046875 3 362.548629 1084.62406 NaN NaN NaN NaN NaN NaN NaN 46.816 1 43.874 43.374 44.374 -2.9421 0 0 0 0.19679 1 8518 8518 0.029283 0 1 + 14017 16055 9093 9096 14119 14119 0.08513103397376653 ETKVRDEHY 9 Unmodified _ETKVRDEHY_ 0 0 0 ENST00000481278.5_1_1:165737917-165738022:-|nuORF ENST00000481278.5_1_1:165737917-165738022:-|nuORF ENST00000481278.5_1_1:165737917-165738022:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 393.25341796875 3 392.859643 1175.5571 0.040589 1.5946E-05 0.049372 1.9396E-05 0.089961 3.5342E-05 392.8596243404045 24.965 0.34419 23.431 23.265 23.609 -1.5342 16 9 2 0 0 0 0.87918 1 4079 4079 2.7352 0.23671 1 1367300 14018 10372 9094 9097 14120 14120 -0.023655518843725076 ETKVRDEHY 9 Unmodified _ETKVRDEHY_ 0 0 0 ENST00000481278.5_1_1:165737917-165738022:-|nuORF ENST00000481278.5_1_1:165737917-165738022:-|nuORF ENST00000481278.5_1_1:165737917-165738022:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 392.859643 1175.5571 -0.045662 -1.7939E-05 0.29303 0.00011512 0.24737 9.718E-05 392.8596662625558 23.389 0.52691 23.389 23.199 23.725 0 -0.050796 0.00061598 NaN 2.7352 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1300900 14019 10372 9094 9097 -0.023655518843725076 ETKVRDEHY 9 Unmodified _ETKVRDEHY_ 0 0 0 ENST00000481278.5_1_1:165737917-165738022:-|nuORF ENST00000481278.5_1_1:165737917-165738022:-|nuORF ENST00000481278.5_1_1:165737917-165738022:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 392.859643 1175.5571 0.89903 0.00035319 -0.713 -0.00028011 0.18602 7.3081E-05 392.85934196622685 25.148 0.41735 23.5 23.269 23.686 -1.6482 0.05982 -0.00056971 NaN 2.7352 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1328800 14020 10372 9094 9097 -0.023655518843725076 ETLAPPAP 8 Unmodified _ETLAPPAP_ 0 0 0 ENST00000223095.4_1_7:100781640-100781877:+|nuORF ENST00000223095.4_1_7:100781640-100781877:+|nuORF ENST00000223095.4_1_7:100781640-100781877:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 398.21710205078125 2 398.215986 794.417419 NaN NaN NaN NaN NaN NaN NaN 83.153 1 79.545 79.045 80.045 -3.6079 0 0 0 0.23312 1 16254 16254 6.2058 0 1 14021 8140 9095 9098 14121 14121 0.011987355690393997 ETLEPKAEQ 9 Unmodified _ETLEPKAEQ_ 0 0 0 PCLO|p.K1007T|1|0.34|ENSG00000186472|chr7:83134530-83134530|T/G|missense_variant PCLO|p.K1007T|1|0.34|ENSG00000186472|chr7:83134530-83134530|T/G|missense_variant PCLO|p.K1007T|1|0.34|ENSG00000186472|chr7:83134530-83134530|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.272216796875 2 522.764029 1043.5135 0.33375 0.00017447 -0.38337 -0.00020041 -0.049621 -2.594E-05 522.7637731609036 36.235 0.56139 33.958 33.632 34.193 -2.2766 27 15 3 0 0 0 0.62921 1 6422 6422 8.7454 5.4641 1 1434600 14022 12762 9096 9099 14122 14122 -0.006511613815291639 ETLFLKPG 8 Unmodified _ETLFLKPG_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 302.044677734375 3 302.176133 903.506569 NaN NaN NaN NaN NaN NaN NaN 53.592 1 50.708 50.208 51.208 -2.8837 0 0 0 0.21486 1 10209 10209 3.9444 1.2092 1 + 14023 14585 9097 9100 14123 14123 0.0509557052856735 ETLHYFRDLYL 11 Unmodified _ETLHYFRDLYL_ 0 0 0 ENSG00000080511|ENST00000591589|RDH8 ENSG00000080511|ENST00000591589|RDH8 ENSG00000080511|ENST00000591589|RDH8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2765197753906 3 490.585632 1468.73507 NaN NaN NaN NaN NaN NaN NaN 92.582 1 88.656 88.156 89.156 -3.9251 0 0 0 0.23379 1 18134 18134 2.4348 0.35082 1 14024 1614 9098 9101 14124 14124 0.01944698314832749 ETLITKFSH 9 Unmodified _ETLITKFSH_ 0 0 0 FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant;ENST00000515664.5_1_4:175158565-175177261:-|nuORF;nc|ENSG00000164117|Q9NRD0-2|FBXO8;FBXO8|p.N298Kfs*3|1|0.26|ENSG00000164117|chr4:174237478-174237479|-/T|frameshift_variant;ENSG00000164117|ENST00000393674|FBXO8 FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201171875 3 359.197596 1074.57096 -0.74284 -0.00026683 0.80235 0.0002882 0.059516 2.1378E-05 359.1978097298194 51.95 1.2207 48.898 48.272 49.493 -3.0517 88 34 4 0 0 0 0.72996 1 9544 9544 4.897 0.36815 1 3260500 14025 11806 9099 9102 14125 14125 0.036657256147236694 ETLITKFSH 9 Unmodified _ETLITKFSH_ 0 0 0 FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant;ENST00000515664.5_1_4:175158565-175177261:-|nuORF;nc|ENSG00000164117|Q9NRD0-2|FBXO8;FBXO8|p.N298Kfs*3|1|0.26|ENSG00000164117|chr4:174237478-174237479|-/T|frameshift_variant;ENSG00000164117|ENST00000393674|FBXO8 FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 359.197596 1074.57096 0.023596 8.4756E-06 0.090516 3.2513E-05 0.11411 4.0989E-05 359.19755598359376 48.991 1.3027 48.991 48.174 49.477 0 0.023819 -0.00017523 NaN 4.897 92 36 4 NaN NaN NaN NaN 0 NaN NaN 0 4170100 14026 11806 9099 9102 0.036657256147236694 ETLITKFSH 9 Unmodified _ETLITKFSH_ 0 0 0 FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant;ENST00000515664.5_1_4:175158565-175177261:-|nuORF;nc|ENSG00000164117|Q9NRD0-2|FBXO8;FBXO8|p.N298Kfs*3|1|0.26|ENSG00000164117|chr4:174237478-174237479|-/T|frameshift_variant;ENSG00000164117|ENST00000393674|FBXO8 FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.197596 1074.57096 -0.43883 -0.00015763 0.34015 0.00012218 -0.098679 -3.5445E-05 359.19771209657495 51.809 1.3825 48.926 48.175 49.558 -2.8824 -0.040781 9.3771E-05 NaN 4.897 88 39 3 NaN NaN NaN NaN 0 NaN NaN 0 3431100 14027 11806 9099 9102 0.036657256147236694 ETLITKFSH 9 Unmodified _ETLITKFSH_ 0 0 0 FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant;ENST00000515664.5_1_4:175158565-175177261:-|nuORF;nc|ENSG00000164117|Q9NRD0-2|FBXO8;FBXO8|p.N298Kfs*3|1|0.26|ENSG00000164117|chr4:174237478-174237479|-/T|frameshift_variant;ENSG00000164117|ENST00000393674|FBXO8 FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.197596 1074.57096 0.049007 1.7603E-05 -0.061271 -2.2008E-05 -0.012264 -4.4054E-06 359.1975425124049 52.141 1.5082 49.053 48.078 49.586 -3.0876 0.086068 -0.0003388 NaN 4.897 72 42 2 NaN NaN NaN NaN 0 NaN NaN 0 3190300 14028 11806 9099 9102 0.036657256147236694 ETLKHEKPP 9 Unmodified _ETLKHEKPP_ 0 0 0 ENSG00000158869|ENST00000289902|FCER1G ENSG00000158869|ENST00000289902|FCER1G ENSG00000158869|ENST00000289902|FCER1G MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 105.01 1 100.95 100.45 101.45 -4.0543 0 0 0 0.23508 1 20196 20196 5.2969 0.39987 1 14029 5183 9100 9103 14126 14126 0.0461712798901317 ETLLLRRKFFY 11 Unmodified _ETLLLRRKFFY_ 0 0 0 ENSG00000171914|ENST00000636159|TLN2;ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;TLN1|p.S405Afs*84|1|0.3|ENSG00000137076|chr9:35720503-35720503|T/-|frameshift_variant;ENST00000378192.2_1_9:35723947-35725691:-|nuORF ENSG00000171914|ENST00000636159|TLN2;ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 372.1061096191406 4 372.219869 1484.85037 -0.25382 -9.4476E-05 1.4028 0.00052216 1.149 0.00042769 372.4712857366217 33.577 0.27659 31.259 31.114 31.391 -2.3175 9 7 2 0 0 0 0.96216 1 6134 6134 0.08335 0 1 392360 14030 4065;6185 9101 9104 14127 14127 0.12733847236449947 ETLLLSFDCY 10 Unmodified _ETLLLSFDCY_ 0 0 0 REV__WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant REV__WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2827758789062 2 602.28374 1202.55293 NaN NaN NaN NaN NaN NaN NaN 115.31 1 110.76 110.26 111.26 -4.555 0 0 0 2.8426 1 22140 22140 3.5927 3.1844 1 + 14031 17846 9102 9105 14128 14128 -0.04024777422296211 ETLLSGEPGSP 11 Unmodified _ETLLSGEPGSP_ 0 0 0 ENSG00000160199|ENST00000291547|PKNOX1;ENST00000480179.1_1_21:44424491-44437149:+|nuORF;nc|ENSG00000160199|P55347-2|PKNOX1 ENSG00000160199|ENST00000291547|PKNOX1 ENSG00000160199|ENST00000291547|PKNOX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7898559570312 2 543.769311 1085.52407 NaN NaN NaN NaN NaN NaN NaN 170.63 1 165.71 165.21 166.21 -4.9149 0 0 0 0.22632 1 33745 33745 0.172 0 1 14032 5235 9103 9106 14129 14129 -0.015271787270876303 ETLQLPSWL 9 Unmodified _ETLQLPSWL_ 0 0 0 ENST00000433031.1_1_7:57216973-57217525:-|nuORF ENST00000433031.1_1_7:57216973-57217525:-|nuORF ENST00000433031.1_1_7:57216973-57217525:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7964477539062 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 146.11 1 141 140.5 141.5 -5.1108 0 0 0 0.21065 1 28252 28252 20.454 1.1966 1 14033 9804 9104 9107 14130 14130 0.03634609757477847 ETLQRIYG 8 Unmodified _ETLQRIYG_ 0 0 0 nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF;nc|ENSG00000185418|A2RTX5-2|TARS3;ENSG00000185418|ENST00000335968|TARS3 nc|ENSG00000113407|P26639-2|TARS1;nc|ENSG00000185418|A2RTX5-2|TARS3 nc|ENSG00000113407|P26639-2|TARS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2545471191406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 82.079 1 78.522 78.022 79.022 -3.557 0 0 0 0.21452 1 16040 16040 13.508 0.97634 1 14034 2740;6987 9105 9108 14131 14131 0.023328834091330464 ETLQSKKLF 9 Unmodified _ETLQSKKLF_ 0 0 0 REV__ZNF649|p.G326Afs*37|1|0.16|ENSG00000198093|chr19:51891161-51891161|T/-|frameshift_variant REV__ZNF649|p.G326Afs*37|1|0.16|ENSG00000198093|chr19:51891161-51891161|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7708740234375 2 547.316232 1092.61791 0.19099 0.00010453 0.0032707 1.7901E-06 0.19427 0.00010632 547.3170766710338 134.15 0.24168 129.51 129.35 129.6 -4.6399 8 6 2 0 0 0 0.72864 1 26456 26456 23.148 6.2061 1 976650 + 14035 19390 9106 9109 14132 14132 0.0753058516584133 ETLSFIFPE 9 Unmodified _ETLSFIFPE_ 0 0 0 CLCNKB|p.Y466Mfs*13|1|0.38|ENSG00000184908|chr1:16051802-16051802|G/-|frameshift_variant;nc|ENSG00000184908|P51801-2|CLCNKB;ENSG00000184908|ENST00000375679|CLCNKB CLCNKB|p.Y466Mfs*13|1|0.38|ENSG00000184908|chr1:16051802-16051802|G/-|frameshift_variant CLCNKB|p.Y466Mfs*13|1|0.38|ENSG00000184908|chr1:16051802-16051802|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2831420898438 2 541.773865 1081.53318 0.099925 5.4137E-05 3.0488 0.0016518 3.1488 0.0017059 541.7744560944956 92.777 0.20765 92.777 92.609 92.817 0 7 5 2 0 0 0 0.80521 1 18130 18130 10.824 6.4947 1 856920 14036 571 9107 9110 14133 14133 -0.004327853707536633 ETMDLSFS 8 Unmodified _ETMDLSFS_ 0 0 0 REV__ENSG00000073910|ENST00000542859|FRY REV__ENSG00000073910|ENST00000542859|FRY MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2582092285156 2 465.199676 928.384799 NaN NaN NaN NaN NaN NaN NaN 134.32 1 129.68 129.18 130.18 -4.6399 0 0 0 0.20896 1 26487 26487 18.135 3.5533 1 + 14037 14307 9108 9111 14134 14134 -0.08225839616102348 ETMKEGLTA 9 Unmodified _ETMKEGLTA_ 0 0 0 REV__ENSG00000198336|ENST00000393450|MYL4 REV__ENSG00000198336|ENST00000393450|MYL4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2749328613281 2 490.241875 978.469197 -0.3429 -0.0001681 -3.3381 -0.0016365 -3.681 -0.0018046 490.2402602644775 45.948 0.13406 43.081 43.031 43.165 -2.8666 5 3 2 0 0 0 0.64382 1 8349 8349 10.074 2.1638 1 287060 + 14038 19406 9109 9112 14135 14135 -0.020898887993553217 ETMLEDLMT 9 Unmodified _ETMLEDLMT_ 0 0 0 ENST00000570216.5_1_15:77983215-78088319:-|nuORF ENST00000570216.5_1_15:77983215-78088319:-|nuORF ENST00000570216.5_1_15:77983215-78088319:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.274169921875 2 541.74085 1081.46715 0.25042 0.00013566 2.5982 0.0014076 2.8487 0.0015432 541.7416007174164 98.521 0.13902 94.388 94.3 94.44 -4.1326 5 3 2 0 0 0 0.74655 1 19351 19351 15.847 0 1 486290 14039 11414 9110 9113 14136 14136 -0.0703268559946082 ETMSWSKPE 9 Unmodified _ETMSWSKPE_ 0 0 0 HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant;HCFC2|p.A339Hfs*2|1|0.43|ENSG00000111727|chr12:104082847-104082847|A/-|frameshift_variant;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;ENSG00000111727|ENST00000229330|HCFC2 HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7763671875 2 547.744782 1093.47501 -0.033021 -1.8087E-05 -4.0202 -0.002202 -4.0532 -0.0022201 547.7411322491478 23.388 0.49311 21.935 21.578 22.071 -1.4535 26 13 3 0 0 0 0.76271 1 3727 3727 10.074 1.3285 1 768650 14040 2642 9111 9114 14137 14137 -0.06798790287689371 ETMSWSKPE 9 Unmodified _ETMSWSKPE_ 0 0 0 HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant;HCFC2|p.A339Hfs*2|1|0.43|ENSG00000111727|chr12:104082847-104082847|A/-|frameshift_variant;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;ENSG00000111727|ENST00000229330|HCFC2 HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant HCFC2|p.N309Ifs*32|4|0.23|ENSG00000111727|chr12:104082757-104082757|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7769165039062 2 547.744782 1093.47501 -0.31902 -0.00017474 -2.704 -0.0014811 -3.023 -0.0016558 548.2456038197912 23.56 0.52328 21.771 21.526 22.049 -1.7886 26 14 3 0 0 0 0.65155 1 3743 3743 15.847 0 1 665390 14041 2642 9111 9114 14138 14138 -0.06798790287689371 ETNAQIGVV 9 Unmodified _ETNAQIGVV_ 0 0 0 REV__ENST00000442741.1_1_13:42830025-42830667:+|nuORF REV__ENST00000442741.1_1_13:42830025-42830667:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2557678222656 2 465.748182 929.481811 0.12412 5.7807E-05 0.12696 5.9131E-05 0.25108 0.00011694 465.748188992565 27.095 0.48633 25.173 24.947 25.433 -1.9222 24 13 3 0 0 0 0.69192 1 4568 4568 6.2058 0 1 3267700 + 14042 14572 9112 9115 14139 14139 0.014248906551983964 ETNEHSECF 9 Unmodified _ETNEHSECF_ 0 0 0 nc|ENSG00000148737|Q9NQB0-17|TCF7L2;VTI1A-TCF7L2|9|fusion;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;CHD7-TCF7L2|9|fusion;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;CHD7-TCF7L2|8|fusion;CHD7-TCF7L2|4|fusion;CHD7-TCF7L2|6|fusion;CHD7-TCF7L2|1|fusion;CHD7-TCF7L2|7|fusion;VTI1A-TCF7L2|7|fusion;VTI1A-TCF7L2|6|fusion;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;VTI1A-TCF7L2|4|fusion;VTI1A-TCF7L2|1|fusion;VTI1A-TCF7L2|8|fusion;TCF7L2|p.K485Sfs*23|2|0.35|ENSG00000148737|chr10:113165558-113165558|A/-|frameshift_variant;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7667236328125 2 548.206021 1094.39749 0.32311 0.00017713 0.73096 0.00040072 1.0541 0.00057785 548.2063577033251 34.443 0.61666 34.443 34.073 34.689 0 24 17 2 0 0 0 0.76271 1 6278 6278 14.838 4.0143 1 514130 14043 517 9113 9116 14140 14140 -0.14593428223861338 ETNFVWHDL 9 Unmodified _ETNFVWHDL_ 0 0 0 REV__ENSG00000198162|ENST00000356554|MAN1A2 REV__ENSG00000198162|ENST00000356554|MAN1A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.71270751953125 3 387.517218 1159.52982 0.21785 8.4422E-05 -0.36025 -0.0001396 -0.1424 -5.5182E-05 387.51702655255735 45.811 4.7767 45.811 43.467 48.244 0 327 136 4 0 0 0 0.63326 1 8758 8758 10.8 10.8 1 12190000 + 14044 19394 9114 9117 14141 14141 -0.04356035424757465 ETNHTDVI 8 Unmodified _ETNHTDVI_ 0 0 0 REV__nc|ENSG00000155324|Q96HH9-2|GRAMD2B;REV__nc|ENSG00000155324|Q96HH9-3|GRAMD2B REV__nc|ENSG00000155324|Q96HH9-3|GRAMD2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25604248046875 2 464.722164 927.429775 0.43598 0.00020261 0.65345 0.00030367 1.0894 0.00050628 464.7256224199855 45.155 0.8118 45.155 44.742 45.554 0 67 22 4 0 0 0 0.95284 1 8418 8418 14.582 4.3983 1 4980300 + 14045 24108;24107 9115 9118 14142 14142 -0.0368427275857357 ETNIEEKVLAS 11 Unmodified _ETNIEEKVLAS_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;MYO5B|p.Y287Lfs*17|1|0.31|ENSG00000167306|chr18:49984806-49984807|-/A|frameshift_variant ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1151123046875 3 411.550475 1231.6296 0.8654 0.00035616 0.32354 0.00013315 1.1889 0.00048931 411.55045099979657 26.744 0.47358 24.962 24.691 25.165 -1.7821 29 13 3 0 0 0 0.96192 1 4746 4746 0.45452 0 1 1348500 14046 5800 9116 9119 14143 14143 0.02304737398526413 ETNIEEKVLAS 11 Unmodified _ETNIEEKVLAS_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;MYO5B|p.Y287Lfs*17|1|0.31|ENSG00000167306|chr18:49984806-49984807|-/A|frameshift_variant ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 411.550475 1231.6296 0.075251 3.097E-05 1.4181 0.00058364 1.4934 0.0006146 411.55079778763877 24.876 0.43728 24.876 24.681 25.118 0 -0.055771 0.00066168 NaN 0.45452 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1383400 14047 5800 9116 9119 0.02304737398526413 ETNIEEKVLAS 11 Unmodified _ETNIEEKVLAS_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;MYO5B|p.Y287Lfs*17|1|0.31|ENSG00000167306|chr18:49984806-49984807|-/A|frameshift_variant ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 411.550475 1231.6296 0.13343 5.4912E-05 0.78344 0.00032243 0.91687 0.00037734 411.55076604038067 26.609 0.31829 24.975 24.789 25.107 -1.6347 0.042509 -0.00012195 NaN 0.45452 21 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1263700 14048 5800 9116 9119 0.02304737398526413 ETNIEEKVLAS 11 Unmodified _ETNIEEKVLAS_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;MYO5B|p.Y287Lfs*17|1|0.31|ENSG00000167306|chr18:49984806-49984807|-/A|frameshift_variant ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 411.550475 1231.6296 -0.33147 -0.00013642 1.0642 0.00043796 0.73271 0.00030155 411.55095846566195 26.838 0.37873 24.916 24.675 25.054 -1.9222 -0.016235 0.00022467 NaN 0.45452 20 10 2 NaN NaN NaN NaN 0 NaN NaN 0 891430 14049 5800 9116 9119 0.02304737398526413 ETNPLLSWYLH 11 Unmodified _ETNPLLSWYLH_ 0 0 0 ENST00000591073.1_1_19:37935822-37959899:-|nuORF;ENST00000591710.5_1_19:37945970-37958237:-|nuORF ENST00000591073.1_1_19:37935822-37959899:-|nuORF ENST00000591073.1_1_19:37935822-37959899:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2335510253906 3 458.23471 1371.6823 0.45216 0.0002072 -1.9479 -0.0008926 -1.4958 -0.00068541 458.2336456800289 32.303 0.10311 30.155 30.103 30.207 -2.1483 4 2 2 0 0 0 0.66087 1 5603 5603 1.4551 0 1 143040 14050 11610 9117 9120 14144 14144 0.011327402520237229 ETPELQTPPWW 11 Unmodified _ETPELQTPPWW_ 0 0 0 ENST00000347464.9_1_2:234203241-234203505:+|nuORF ENST00000347464.9_1_2:234203241-234203505:+|nuORF ENST00000347464.9_1_2:234203241-234203505:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.54315185546875 3 461.890832 1382.65067 0.18569 8.5769E-05 0.0057743 2.6671E-06 0.19147 8.8436E-05 461.8906401913669 61.432 0.83661 58.192 57.787 58.623 -3.2395 55 23 3 0 0 0 0.96197 1 11582 11582 1.2148 0.80657 1 2221900 14051 8913 9118 9121 14145 14145 -0.02535252501957075 ETPLSQIQ 8 Unmodified _ETPLSQIQ_ 0 0 0 REV__TBX22|p.L235Q|1|0.07|ENSG00000122145|chrX:80026774-80026774|T/A|missense_variant REV__TBX22|p.L235Q|1|0.07|ENSG00000122145|chrX:80026774-80026774|T/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2669982910156 2 458.242732 914.470912 -0.055111 -2.5254E-05 0.1671 7.6574E-05 0.11199 5.132E-05 458.24267887886566 96.858 0.17056 92.76 92.703 92.873 -4.0978 6 4 2 0 0 0 8448 1 18995 18995 3.5871 0 1 709140 + 14052 15677 9119 9122 14146 14146 0.010254882809135779 ETPPRPRAAA 10 Unmodified _ETPPRPRAAA_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.28271484375 2 533.293622 1064.57269 0.12429 6.6284E-05 0.30354 0.00016188 0.42784 0.00022816 533.2937359451315 31.185 0.45397 31.185 30.932 31.386 0 20 12 2 0 0 0 0.72406 1 5649 5649 8.7454 0 1 1986800 + 14053 17604 9120 9123 14147 14147 0.042987794233113164 ETPYVIKG 8 Unmodified _ETPYVIKG_ 0 0 0 REV__ENST00000584106.1_1_17:37026403-37055075:+|nuORF REV__ENST00000584106.1_1_17:37026403-37055075:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.751220703125 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 46.28 1 46.28 45.78 46.78 0 0 0 0 0.2074 1 8715 8715 19.439 0 1 + 14054 13824 9121 9124 14148 14148 0.029309801489034726 ETQLLGRVY 9 Unmodified _ETQLLGRVY_ 0 0 0 REV__ENST00000482199.5_1_7:100883089-100884880:-|nuORF REV__ENST00000482199.5_1_7:100883089-100884880:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2009582519531 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 79.792 1 79.792 79.292 80.292 0 0 0 0 0.23508 1 15528 15528 2.7352 0.23671 1 + 14055 19664 9122 9125 14149 14149 0.0461712798901317 ETQRKKGPQ 9 Unmodified _ETQRKKGPQ_ 0 0 0 REV__ENST00000490365.1_1_10:76744849-76785012:+|nuORF REV__ENST00000490365.1_1_10:76744849-76785012:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.55987548828125 3 357.868362 1070.58326 -0.69119 -0.00024736 0.99461 0.00035594 0.30341 0.00010858 357.8686504062223 26.222 0.41621 24.3 24.086 24.503 -1.9222 23 11 3 0 0 0 0.87497 1 4308 4308 0.96228 0 1 886820 + 14056 17265 9123 9126 14150 14150 0.050787620777555276 ETQRVLEAP 9 Unmodified _ETQRVLEAP_ 0 0 0 ENST00000475826.1_1_6:32121346-32121991:-|nuORF;ENST00000494332.5_1_6:32121346-32122093:-|nuORF ENST00000475826.1_1_6:32121346-32121991:-|nuORF ENST00000475826.1_1_6:32121346-32121991:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27197265625 2 521.780013 1041.54547 -0.4492 -0.00023439 1.1333 0.00059134 0.6841 0.00035695 522.2820180057693 72.458 0.21365 68.831 68.696 68.91 -3.6275 7 5 2 0 0 0 0.31714 1 13696 13696 30.637 3.0077 1 697090 14057 10278 9124 9127 14151 14151 0.026362510922808724 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2387390136719 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 47.854 1 47.854 47.354 48.354 0 0 0 0 0.21452 1 9028 9028 13.508 0 1 + 14058 23276 9125 9128 14152 14152 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23797607421875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 56.289 1 56.289 55.789 56.789 0 0 0 0 0.2074 1 10747 10747 19.439 4.8573 1 + 14059 23276 9125 9128 14153 14153 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2409973144531 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 57.859 1 57.859 57.359 58.359 0 0 0 0 0.21452 1 11066 11066 13.508 0 1 + 14060 23276 9125 9128 14154 14154 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2373962402344 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 59.617 1 59.617 59.117 60.117 0 0 0 0 0.21486 1 11421 11421 8.5933 0 1 + 14061 23276 9125 9128 14155 14155 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2384033203125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 80.608 1 80.608 80.108 81.108 0 0 0 0 0.2074 1 15695 15695 19.439 2.4967 1 + 14062 23276 9125 9128 14156 14156 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23846435546875 2 458.237784 914.461016 -0.12358 -5.6631E-05 0.88877 0.00040727 0.76518 0.00035064 458.2381682955414 59.788 0.94103 56.855 56.469 57.41 -2.9333 35 26 2 0 0 0 0.70613 1 11566 11566 13.508 1.8676 1 1770400 + 14063 23276 9125 9128 14157 14157 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2242736816406 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 50.517 1 47.636 47.136 48.136 -2.8811 0 0 0 0.23025 1 9585 9585 0.62683 0 1 + 14064 23276 9125 9128 14158 14158 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23760986328125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 67.847 1 64.738 64.238 65.238 -3.1086 0 0 0 0.21486 1 13164 13164 11.64 0.52583 1 + 14065 23276 9125 9128 14159 14159 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2378234863281 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 86.737 1 82.787 82.287 83.287 -3.9503 0 0 0 0.21452 1 16512 16512 13.508 0.97634 1 + 14066 23276 9125 9128 14160 14160 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2381591796875 2 458.237784 914.461016 0.13958 6.3962E-05 0.81717 0.00037446 0.95676 0.00043842 458.23800951520076 60.112 0.77853 56.888 56.533 57.312 -3.2237 45 21 3 0 0 0 0.70613 1 11308 11308 13.508 0 1 1506000 + 14067 23276 9125 9128 14161 14161 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2381286621094 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 53.323 1 50.228 49.728 50.728 -3.0954 0 0 0 0.21486 1 9854 9854 8.5933 0 1 + 14068 23276 9125 9128 14162 14162 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2381896972656 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 60.941 1 57.718 57.218 58.218 -3.2237 0 0 0 0.21039 1 11403 11403 16.942 1.0951 1 + 14069 23276 9125 9128 14163 14163 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.224365234375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 71.281 1 67.814 67.314 68.314 -3.467 0 0 0 0.21452 1 13509 13509 13.508 1.8676 1 + 14070 23276 9125 9128 14164 14164 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23895263671875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 78.909 1 75.233 74.733 75.733 -3.676 0 0 0 0.2074 1 15031 15031 19.439 4.8573 1 + 14071 23276 9125 9128 14165 14165 0.0003634506618936939 ETRAWVPG 8 Unmodified _ETRAWVPG_ 0 0 0 REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF REV__ENST00000587552.5_1_19:5691925-5692015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2388000488281 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 86.701 1 82.972 82.472 83.472 -3.7289 0 0 0 0.21452 1 16581 16581 13.508 0 1 + 14072 23276 9125 9128 14166 14166 0.0003634506618936939 ETRELVAI 8 Unmodified _ETRELVAI_ 0 0 0 GSK3A|p.Q238Gfs*17|1|0.25|ENSG00000105723|chr19:42234633-42234634|GG/-|frameshift_variant;GSK3A|p.G337Efs*11|1|0.5|ENSG00000105723|chr19:42233198-42233198|C/-|frameshift_variant;ENSG00000105723|ENST00000222330|GSK3A GSK3A|p.Q238Gfs*17|1|0.25|ENSG00000105723|chr19:42234633-42234634|GG/-|frameshift_variant GSK3A|p.Q238Gfs*17|1|0.25|ENSG00000105723|chr19:42234633-42234634|GG/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2553405761719 2 465.766374 929.518196 0.054896 2.5569E-05 0.13372 6.2283E-05 0.18862 8.7852E-05 465.76672371618355 61.068 0.45424 57.699 57.513 57.967 -3.3694 15 12 2 0 0 0 0.64118 1 11381 11381 30.637 21.253 1 751070 14073 2336 9126 9129 14167 14167 0.05061767551910634 ETRELVAI 8 Unmodified _ETRELVAI_ 0 0 0 GSK3A|p.Q238Gfs*17|1|0.25|ENSG00000105723|chr19:42234633-42234634|GG/-|frameshift_variant;GSK3A|p.G337Efs*11|1|0.5|ENSG00000105723|chr19:42233198-42233198|C/-|frameshift_variant;ENSG00000105723|ENST00000222330|GSK3A GSK3A|p.Q238Gfs*17|1|0.25|ENSG00000105723|chr19:42234633-42234634|GG/-|frameshift_variant GSK3A|p.Q238Gfs*17|1|0.25|ENSG00000105723|chr19:42234633-42234634|GG/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 465.766374 929.518196 0.17596 8.1957E-05 -0.9 -0.00041919 -0.72404 -0.00033723 465.76652094973275 61.009 0.48691 57.785 57.632 58.119 -3.2237 0.043155 -0.00067968 NaN 30.637 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 841900 14074 2336 9126 9129 0.05061767551910634 ETRFSYEY 8 Unmodified _ETRFSYEY_ 0 0 0 REV__ENSG00000196814|ENST00000361171|MVB12B REV__ENSG00000196814|ENST00000361171|MVB12B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7904052734375 2 547.743096 1093.47164 NaN NaN NaN NaN NaN NaN NaN 35.211 1 32.934 32.434 33.434 -2.2766 0 0 0 0.21486 1 6185 6185 5.7604 0.028577 1 + 14075 19283 9127 9130 14168 14168 -0.07135717070036662 ETRGGVGV 8 Unmodified _ETRGGVGV_ 0 0 0 ENSG00000215612|ENST00000400677|HMX1 ENSG00000215612|ENST00000400677|HMX1 ENSG00000215612|ENST00000400677|HMX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7093811035156 2 387.70886 773.403166 NaN NaN NaN NaN NaN NaN NaN 19.498 1 18.172 17.672 18.672 -1.3251 0 0 0 0.21486 1 2973 2973 8.5933 0 1 14076 7751 9128 9131 14169 14169 0.007400831407721853 ETRGGVGV 8 Unmodified _ETRGGVGV_ 0 0 0 ENSG00000215612|ENST00000400677|HMX1 ENSG00000215612|ENST00000400677|HMX1 ENSG00000215612|ENST00000400677|HMX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7092590332031 2 387.70886 773.403166 NaN NaN NaN NaN NaN NaN NaN 19.821 1 18.186 17.686 18.686 -1.6351 0 0 0 0.21486 1 3013 3013 8.5933 0 1 14077 7751 9128 9131 14170 14170 0.007400831407721853 ETRKYKKVYWY 11 Unmodified _ETRKYKKVYWY_ 0 0 0 ENST00000478899.1_1_1:156707192-156707995:-|nuORF;ENSG00000143314|ENST00000361531|MRPL24 ENST00000478899.1_1_1:156707192-156707995:-|nuORF ENST00000478899.1_1_1:156707192-156707995:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2804565429688 3 521.948793 1562.82455 -0.73148 -0.0003818 3.8801 0.0020252 3.1486 0.0016434 522.2856517028761 47.036 0.20041 44.094 43.968 44.168 -2.9421 6 5 2 0 0 0 0.82392 1 8541 8541 0.45452 0.046251 1 1387300 14078 4471 9129 9132 14171 14171 0.06564952994199302 ETRLAEREKE 10 Unmodified _ETRLAEREKE_ 0 0 0 REV__ENST00000491700.1_1_1:114522138-114523244:+|nuORF REV__ENST00000491700.1_1_1:114522138-114523244:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7494506835938 2 630.830766 1259.64698 NaN NaN NaN NaN NaN NaN NaN 105.93 1 101.67 101.17 102.17 -4.2638 0 0 0 0.22588 1 20853 20853 4.5289 0.93237 1 + 14079 15498 9130 9133 14172 14172 0.027540777241711112 ETRLEFERTQ 10 Unmodified _ETRLEFERTQ_ 0 0 0 nc|ENSG00000196535|Q92614-5|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;ENST00000531892.5_1_17:27413633-27417836:-|nuORF;ENST00000546105.5_1_17:27401790-27418677:-|nuORF nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-5|MYO18A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2152099609375 3 436.889603 1307.64698 -0.1111 -4.8538E-05 2.6608 0.0011625 2.5497 0.001114 436.8902299291448 23.041 0.41273 21.588 21.405 21.818 -1.4535 14 11 2 0 0 0 0.75765 1 3732 3732 3.3196 0.68841 1 770740 14080 7280 9131 9134 14173 14173 0.005460777241751202 ETRPLTLQ 8 Unmodified _ETRPLTLQ_ 0 0 0 REV__ENSG00000115970|ENST00000405975|THADA REV__ENSG00000115970|ENST00000405975|THADA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7230224609375 2 479.271824 956.529095 -0.060114 -2.8811E-05 0.099458 4.7668E-05 0.039344 1.8857E-05 479.2717905323746 69.065 0.56483 65.885 65.518 66.082 -3.1796 26 15 2 0 0 0 0.96386 1 13396 13396 14.838 0 1 5405700 + 14081 15459 9132 9135 14174 14174 0.04909169926202139 ETRPLTLQ 8 Unmodified _ETRPLTLQ_ 0 0 0 REV__ENSG00000115970|ENST00000405975|THADA REV__ENSG00000115970|ENST00000405975|THADA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72283935546875 2 479.271824 956.529095 0.3657 0.00017527 -0.23615 -0.00011318 0.12955 6.2089E-05 479.271575815711 69.504 0.57359 65.968 65.611 66.185 -3.5362 34 15 3 0 0 0 0.97174 1 13065 13065 19.257 10.512 1 4628700 + 14082 15459 9132 9135 14175 14175 0.04909169926202139 ETRQACTHSE 10 Unmodified _ETRQACTHSE_ 0 0 0 REV__ENST00000586107.1_1_19:19380531-19384159:-|nuORF REV__ENST00000586107.1_1_19:19380531-19384159:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7123718261719 3 387.836621 1160.48803 -0.39593 -0.00015356 1.0553 0.00040928 0.65936 0.00025572 387.8369925665475 41.462 0.51299 38.828 38.607 39.12 -2.6348 22 14 2 0 0 0 1.1325 1 7733 7733 0.043787 0 1 524720 + 14083 23262 9133 9136 14176 14176 -0.08578959175588352 ETRQLQRVKEK 11 Unmodified _ETRQLQRVKEK_ 0 0 0 REV__ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant REV__ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 707.9129028320312 2 707.909882 1413.80521 NaN NaN NaN NaN NaN NaN NaN 166.45 1 161.66 161.16 162.16 -4.7898 0 0 0 0.23266 1 33444 33444 6.1918 1.2948 1 + 14084 12903 9134 9137 14177 14177 0.11485996703254386 ETRRPDKY 8 Unmodified _ETRRPDKY_ 0 0 0 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.0747985839844 3 355.520962 1063.54106 0.22391 7.9605E-05 0.068895 2.4494E-05 0.29281 0.0001041 355.5208662330459 30.288 0.35329 28.172 27.941 28.295 -2.1167 14 9 2 0 0 0 0.98792 1 5448 5448 6.7232 6.0963 1 378950 + 14085 23948 9135 9138 14178 14178 0.011827866693693068 ETRRPDKY 8 Unmodified _ETRRPDKY_ 0 0 0 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 355.520962 1063.54106 0.34159 0.00012144 -0.83787 -0.00029788 -0.49628 -0.00017644 355.5204815498687 30.088 0.45602 28.195 27.856 28.312 -1.8928 0.030289 -0.00075848 NaN 6.7232 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 523390 + 14086 23948 9135 9138 0.011827866693693068 ETRRPDKY 8 Unmodified _ETRRPDKY_ 0 0 0 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 355.520962 1063.54106 -0.13566 -4.8228E-05 -0.12356 -4.3929E-05 -0.25922 -9.2158E-05 355.52089922529933 30.202 0.31979 28.128 27.937 28.257 -2.0743 -0.037047 3.3743E-06 NaN 6.7232 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 590320 + 14087 23948 9135 9138 0.011827866693693068 ETRTYNVY 8 Unmodified _ETRTYNVY_ 0 0 0 REV__FOLH1|p.A180T|1|0.21|ENSG00000086205|chr11:49186745-49186745|C/T|missense_variant REV__FOLH1|p.A180T|1|0.21|ENSG00000086205|chr11:49186745-49186745|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6853637695312 2 523.251089 1044.48762 -0.47486 -0.00024847 0.42688 0.00022336 -0.047979 -2.5105E-05 523.2513244276356 36.505 1.6524 34.157 33.757 35.409 -2.3479 103 47 4 0 0 0 0.9455 1 6417 6417 16.942 0 1 56944000 + 14088 23545 9136 9139 14179 14179 -0.032840108331583906 ETSDVVTV 8 Unmodified _ETSDVVTV_ 0 0 0 ENSG00000143217|ENST00000368012|NECTIN4 ENSG00000143217|ENST00000368012|NECTIN4 ENSG00000143217|ENST00000368012|NECTIN4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2358703613281 2 425.21364 848.412728 NaN NaN NaN NaN NaN NaN NaN 19.85 1 18.215 17.715 18.715 -1.6351 0 0 0 0.21486 1 3020 3020 9.3474 0 1 14089 4463 9137 9140 14180 14180 -0.017541933643542507 ETSEPALQ 8 Unmodified _ETSEPALQ_ 0 0 0 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant;ENSG00000089558|ENST00000264661|KCNH4 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21734619140625 2 437.711265 873.407977 -0.32809 -0.00014361 0.39204 0.0001716 0.063952 2.7993E-05 437.7113667134427 52.547 0.97463 49.664 49.342 50.317 -2.8837 44 27 2 0 0 0 0.58903 1 9975 9975 23.148 0 1 1542800 14090 1763 9138 9141 14181 14181 -0.03379077507133843 ETSEPALQ 8 Unmodified _ETSEPALQ_ 0 0 0 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant;ENSG00000089558|ENST00000264661|KCNH4 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2273864746094 2 437.711265 873.407977 -0.2206 -9.656E-05 0.4332 0.00018962 0.2126 9.3057E-05 437.7114388277562 52.949 0.79014 49.854 49.449 50.239 -3.0954 38 22 2 0 0 0 0.81042 1 9765 9765 23.148 0 1 739860 14091 1763 9138 9141 14182 14182 -0.03379077507133843 ETSFRRTVA 9 Unmodified _ETSFRRTVA_ 0 0 0 REV__ENSG00000166825|ENST00000300060|ANPEP REV__ENSG00000166825|ENST00000300060|ANPEP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2625122070312 2 533.78563 1065.55671 0.39862 0.00021278 0.44738 0.0002388 0.846 0.00045158 533.7853404417685 38.758 0.35469 36.317 36.125 36.479 -2.4419 14 9 2 0 0 0 0.79204 1 6906 6906 7.2892 1.0834 1 581550 + 14092 17877 9139 9142 14183 14183 0.026550731864290356 ETSNILED 8 Unmodified _ETSNILED_ 0 0 0 REV__EP300|p.N419Mfs*12|1|0.1|ENSG00000100393|chr22:41129973-41129973|A/-|frameshift_variant REV__EP300|p.N419Mfs*12|1|0.1|ENSG00000100393|chr22:41129973-41129973|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2483215332031 2 460.714005 919.413456 NaN NaN NaN NaN NaN NaN NaN 40.929 1 40.929 40.429 41.429 0 0 0 0 0.21486 1 7624 7624 9.3474 0 1 + 14093 14707 9140 9143 14184 14184 -0.04947398715330564 ETSPEIFEE 9 Unmodified _ETSPEIFEE_ 0 0 0 REV__nc|ENSG00000173706|Q9ULI3-2|HEG1 REV__nc|ENSG00000173706|Q9ULI3-2|HEG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.5047607421875 3 360.829238 1079.46589 -0.32376 -0.00011682 0.34992 0.00012626 0.026158 9.4387E-06 361.16232326448767 16.27 0.17272 16.27 16.129 16.302 0 5 4 2 0 0 0 0.6215 1 2519 2519 0.073264 0 1 110520 + 14094 18370 9141 9144 14185 14185 -0.07066860372356132 ETSPHYNAY 9 Unmodified _ETSPHYNAY_ 0 0 0 REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2743530273438 2 541.232896 1080.45124 NaN NaN NaN NaN NaN NaN NaN 97.496 1 93.261 92.761 93.761 -4.2348 0 0 0 0.23508 1 18624 18624 8.5933 0.68312 1 + 14095 12882 9142 9145 14186 14186 -0.08576887729873306 ETSPQPHRLQW 11 Unmodified _ETSPQPHRLQW_ 0 0 0 ENST00000374409.5_1_1:24684664-24685051:-|nuORF ENST00000374409.5_1_1:24684664-24685051:-|nuORF ENST00000374409.5_1_1:24684664-24685051:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2340087890625 3 460.233592 1377.67895 NaN NaN NaN NaN NaN NaN NaN 110.69 1 106.27 105.77 106.77 -4.4231 0 0 0 0.22632 1 21809 21809 0.11104 0 1 14096 9218 9143 9146 14187 14187 0.0052149019797980145 ETSRKWNR 8 Unmodified _ETSRKWNR_ 0 0 0 REV__ENSG00000160294|ENST00000291688|MCM3AP REV__ENSG00000160294|ENST00000291688|MCM3AP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2114562988281 3 359.524707 1075.55229 -1.6346 -0.00058768 1.0092 0.00036284 -0.62538 -0.00022484 359.5249682633836 19.889 0.51715 18.254 17.946 18.463 -1.6351 34 14 4 0 0 0 8448 1 3045 3045 0.62683 0.61855 1 5003700 + 14097 17413 9144 9147 14188 14188 0.017536087635107833 ETSSKLEAP 9 Unmodified _ETSSKLEAP_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24578857421875 2 481.245472 960.476391 -0.30752 -0.00014799 1.0211 0.0004914 0.71358 0.00034341 481.24591869732234 19.152 0.49875 17.827 17.469 17.968 -1.3251 26 13 2 0 0 0 0.34411 1 2928 2928 29.082 4.2 1 1447400 + 14098 19707 9145 9148 14189 14189 -0.0054283292729451205 ETSTFAPDLGG 11 Unmodified _ETSTFAPDLGG_ 0 0 0 REV__ENSG00000105738|ENST00000222345|SIPA1L3 REV__ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77685546875 2 547.753661 1093.49277 -0.25119 -0.00013759 1.1745 0.00064332 0.92328 0.00050573 548.2571540404765 24.114 1.2091 22.261 21.672 22.881 -1.8534 52 32 2 0 0 0 0.50871 1 3934 3934 22.736 3.4793 1 1598000 + 14099 15015 9146 9149 14190 14190 -0.05023751761200401 ETSVKRSLY 9 Unmodified _ETSVKRSLY_ 0 0 0 REV__nc|ENSG00000123575|Q6PEV8-2|FAM199X REV__nc|ENSG00000123575|Q6PEV8-2|FAM199X MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26318359375 2 541.795663 1081.57677 0.13295 7.203E-05 0.0027109 1.4688E-06 0.13566 7.3498E-05 541.7956430360292 48.505 0.69811 45.635 45.273 45.971 -2.869 47 19 3 0 0 0 0.62921 1 9137 9137 24.021 3.606 1 8285400 + 14100 15735 9147 9150 14191 14191 0.03924824126374915 ETSVKRSLY 9 Unmodified _ETSVKRSLY_ 0 0 0 REV__nc|ENSG00000123575|Q6PEV8-2|FAM199X REV__nc|ENSG00000123575|Q6PEV8-2|FAM199X MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2813720703125 2 541.795663 1081.57677 0.059932 3.2471E-05 0.16125 8.7362E-05 0.22118 0.00011983 541.7957048367313 48.579 0.73426 45.58 45.265 45.999 -2.999 53 20 4 0 0 0 0.73268 1 8851 8851 24.021 9.6152 1 8221400 + 14101 15735 9147 9150 14192 14192 0.03924824126374915 ETSVQKVISRL 11 Unmodified _ETSVQKVISRL_ 0 0 0 REV__MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant REV__MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.767578125 2 630.369527 1258.7245 NaN NaN NaN NaN NaN NaN NaN 67.624 1 67.624 67.124 68.124 0 0 0 0 0.22632 1 13073 13073 3.0723 1.6171 1 + 14102 13863 9148 9151 14193 14193 0.10548715660365815 ETTDLPVKY 9 Unmodified _ETTDLPVKY_ 0 0 0 REV__HTT|p.P1176Lfs*3|1|0.18|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant REV__HTT|p.P1176Lfs*3|1|0.18|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2848510742188 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 67.826 1 64.499 63.999 64.999 -3.3268 0 0 0 0.23508 1 12794 12794 12.532 1.0368 1 + 14103 19333 9149 9152 14194 14194 0.009303131409069465 ETTIVSTVP 9 Unmodified _ETTIVSTVP_ 0 0 0 REV__ENSG00000155761|ENST00000336338|SPAG17 REV__ENSG00000155761|ENST00000336338|SPAG17 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1749572753906 3 316.174569 945.501877 NaN NaN NaN NaN NaN NaN NaN 86.399 1 82.449 81.949 82.949 -3.9503 0 0 0 0.23508 1 16447 16447 2.7352 0.23671 1 + 14104 17225 9150 9153 14195 14195 0.02694641595144276 ETTKRHLFFTV 11 Unmodified _ETTKRHLFFTV_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2445068359375 3 460.254105 1377.74048 NaN NaN NaN NaN NaN NaN NaN 77.997 1 74.534 74.034 75.034 -3.4633 0 0 0 0.22632 1 15230 15230 0.03141 0.025454 1 14105 7260 9151 9154 14196 14196 0.0667242189724675 ETTKRHLFFTV 11 Unmodified _ETTKRHLFFTV_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2312316894531 3 460.254105 1377.74048 0.31301 0.00014406 -0.18236 -8.3931E-05 0.13065 6.0134E-05 460.25399586630243 117.09 0.7581 112.51 112.26 113.02 -4.5815 53 21 4 0 0 0 0.65962 1 22562 22562 0.026206 0 1 2966400 14106 7260 9151 9154 14197 14197 0.0667242189724675 ETTRLMDL 8 Unmodified _ETTRLMDL_ 0 0 0 REV__ENST00000498309.1_1_5:132203011-132203167:+|nuORF REV__ENST00000498309.1_1_5:132203011-132203167:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2737731933594 2 489.749867 977.485181 -0.11511 -5.6376E-05 0.091622 4.4872E-05 -0.023489 -1.1504E-05 489.74987432052336 59.699 0.70809 59.699 59.321 60.029 0 26 19 2 0 0 0 0.69031 1 11395 11395 15.847 2.8047 1 1760900 + 14107 22414 9152 9155 14198 14198 -0.004461825624616722 ETTSATSSPY 10 Unmodified _ETTSATSSPY_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2578125 2 522.230019 1042.44548 -0.67287 -0.00035139 0.06279 3.2791E-05 -0.61008 -0.0003186 522.2302210489624 39.133 1.613 36.691 36.054 37.667 -2.4419 146 45 5 0 0 0 0.48672 1 6907 6907 25.399 0 1 334280000 14108 2000 9153 9156 14199 14199 -0.07404031032183411 ETTSATSSPY 10 Unmodified _ETTSATSSPY_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.281494140625 2 522.230019 1042.44548 0.2038 0.00010643 -0.82764 -0.00043222 -0.62384 -0.00032579 522.2297620102274 39.11 1.7472 36.705 36.058 37.805 -2.4049 152 49 5 0 0 0 0.59928 1 6895 6895 19.257 2.3147 1 272820000 14109 2000 9153 9156 14200 14200 -0.07404031032183411 ETTSHSTPG 9 Unmodified _ETTSHSTPG_ 0 0 0 nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A nc|ENSG00000169894|Q02505-2|MUC3A nc|ENSG00000169894|Q02505-2|MUC3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23858642578125 2 458.703971 915.393389 -0.14302 -6.5602E-05 0.19675 9.025E-05 0.053734 2.4648E-05 458.7040304314609 59.176 0.66698 56.266 55.929 56.596 -2.9105 30 18 2 0 0 0 0.77732 1 11420 11420 12.532 3.9383 1 1669000 14110 6017 9154 9157 14201 14201 -0.06769149655269757 ETTSHSTPG 9 Unmodified _ETTSHSTPG_ 0 0 0 nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A nc|ENSG00000169894|Q02505-2|MUC3A nc|ENSG00000169894|Q02505-2|MUC3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2273254394531 2 458.703971 915.393389 0.034055 1.5621E-05 -0.032781 -1.5037E-05 0.0012743 5.8455E-07 458.7039253284264 59.745 0.66038 56.431 55.961 56.622 -3.3139 29 18 2 0 0 0 0.60805 1 11085 11085 12.532 0.29089 1 1163200 14111 6017 9154 9157 14202 14202 -0.06769149655269757 ETTSHSTPG 9 Unmodified _ETTSHSTPG_ 0 0 0 nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A nc|ENSG00000169894|Q02505-2|MUC3A nc|ENSG00000169894|Q02505-2|MUC3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2247619628906 2 458.703971 915.393389 0.12166 5.5805E-05 -0.13043 -5.9828E-05 -0.0087689 -4.0223E-06 458.70394721030726 59.609 0.76936 56.385 55.978 56.747 -3.2237 29 21 2 0 0 0 0.72864 1 11165 11165 23.148 10.908 1 817570 14112 6017 9154 9157 14203 14203 -0.06769149655269757 ETTSHSTPG 9 Unmodified _ETTSHSTPG_ 0 0 0 nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A nc|ENSG00000169894|Q02505-2|MUC3A nc|ENSG00000169894|Q02505-2|MUC3A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.703971 915.393389 0.034055 1.5621E-05 -0.032781 -1.5037E-05 0.0012743 5.8455E-07 458.7039253284264 59.745 0.66038 56.431 55.961 56.622 -3.3139 0.13836 -2.5344E-05 NaN 12.532 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1163200 14113 6017 9154 9157 -0.06769149655269757 ETTSLSHV 8 Unmodified _ETTSLSHV_ 0 0 0 ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF ENST00000601927.1_1_19:47996374-47999001:-|nuORF ENST00000601927.1_1_19:47996374-47999001:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23602294921875 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 67.486 1 67.486 66.986 67.986 0 0 0 0 0.21486 1 13046 13046 4.756 0.81161 1 14114 11677 9155 9158 14204 14204 -0.017353712702401936 ETTVEFYGD 9 Unmodified _ETTVEFYGD_ 0 0 0 REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1 REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 354.07672119140625 3 354.153833 1059.43967 NaN NaN NaN NaN NaN NaN NaN 106.8 1 106.8 106.3 107.3 0 0 0 0 0.23508 1 20997 20997 2.7352 0.82882 1 + 14115 24994 9156 9159 14205 14205 -0.08767129543844021 ETTYESSY 8 Unmodified _ETTYESSY_ 0 0 0 REV__nc|ENSG00000119508|Q92570-2|NR4A3 REV__nc|ENSG00000119508|Q92570-2|NR4A3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2654724121094 2 490.198187 978.381822 0.47985 0.00023522 3.7603 0.0018433 4.2402 0.0020785 490.2014093319867 104.39 0.32386 100.33 100.13 100.45 -4.0543 19 8 3 0 0 0 0.88445 1 20094 20094 0.62683 0 1 651460 + 14116 15581 9157 9160 14206 14206 -0.10823391469273247 ETTYPEWHTP 10 Unmodified _ETTYPEWHTP_ 0 0 0 REV__nc|ENSG00000170835|P19835-2|CEL REV__nc|ENSG00000170835|P19835-2|CEL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7777709960938 2 630.78021 1259.54587 NaN NaN NaN NaN NaN NaN NaN 90.535 1 90.535 90.035 91.035 0 0 0 0 0.22588 1 17687 17687 9.3831 2.66 1 + 14117 18181 9158 9161 14207 14207 -0.07352373978528703 ETVAGQLR 8 Unmodified _ETVAGQLR_ 0 0 0 REV__ENST00000389301.7_1_16:89825003-89828378:-|nuORF REV__ENST00000389301.7_1_16:89825003-89828378:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21630859375 2 437.243067 872.47158 NaN NaN NaN NaN NaN NaN NaN 109.7 1 105.32 104.82 105.82 -4.3776 0 0 0 0.21323 1 21619 21619 14.582 0 1 + 14118 21194 9159 9162 14208 14208 0.030243277206068342 ETVALKCKA 9 Unmodified _ETVALKCKA_ 0 0 0 LRIG1|p.Q713K|1|0.11|ENSG00000144749|chr3:66383336-66383336|G/T|missense_variant LRIG1|p.Q713K|1|0.11|ENSG00000144749|chr3:66383336-66383336|G/T|missense_variant LRIG1|p.Q713K|1|0.11|ENSG00000144749|chr3:66383336-66383336|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7691345214844 2 481.770603 961.526652 NaN NaN NaN NaN NaN NaN NaN 137.24 1 132.6 132.1 133.1 -4.6413 0 0 0 0.19721 1 27083 27083 24.021 0.87215 1 14119 12084 9160 9163 14209 14209 0.04434998196870765 ETVDIGKSI 9 Unmodified _ETVDIGKSI_ 0 0 0 REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1 REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2538757324219 2 481.263665 960.512776 NaN NaN NaN NaN NaN NaN NaN 68.208 1 64.818 64.318 65.318 -3.3903 0 0 0 0.20155 1 12872 12872 23.148 2.2772 1 + 14120 25457 9161 9164 14210 14210 0.030940439694518318 ETVDIGKSI 9 Unmodified _ETVDIGKSI_ 0 0 0 REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1 REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2447204589844 2 481.263665 960.512776 NaN NaN NaN NaN NaN NaN NaN 68.28 1 64.89 64.39 65.39 -3.3903 0 0 0 0.22962 1 12887 12887 14.838 2.3067 1 + 14121 25457 9161 9164 14211 14211 0.030940439694518318 ETVELGLSA 9 Unmodified _ETVELGLSA_ 0 0 0 REV__ENST00000401088.8_1_1:16722324-16722621:+|nuORF REV__ENST00000401088.8_1_1:16722324-16722621:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2366027832031 2 459.742565 917.470577 0.40568 0.00018651 -0.24368 -0.00011203 0.162 7.4478E-05 459.74239806167276 118.35 1.0428 113.74 113.21 114.25 -4.6106 70 28 3 0 0 0 0.048054 1 22661 22661 11.749 0 1 22694000 + 14122 21358 9162 9165 14212 14212 0.008540685610455512 ETVKECILF 9 Unmodified _ETVKECILF_ 0 0 0 REV__ENST00000397381.4_1_19:15947062-15947119:+|nuORF REV__ENST00000397381.4_1_19:15947062-15947119:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.283203125 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 75.059 1 71.336 70.836 71.836 -3.7227 0 0 0 0.21469 1 14190 14190 19.257 1.122 1 + 14123 21301 9163 9166 14213 14213 0.015478476484986459 ETVKGPIGI 9 Unmodified _ETVKGPIGI_ 0 0 0 REV__ENST00000523459.5_1_8:42091328-42128215:-|nuORF REV__ENST00000523459.5_1_8:42091328-42128215:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2265319824219 2 457.271293 912.528032 -0.15031 -6.8733E-05 0.38195 0.00017466 0.23164 0.00010592 457.27138531572166 47.012 0.58724 44.171 43.972 44.56 -2.8409 27 16 2 0 0 0 0.57447 1 8882 8882 14.838 3.198 1 931360 + 14124 22666 9164 9167 14214 14214 0.06826955557278325 ETVNIWSL 8 Unmodified _ETVNIWSL_ 0 0 0 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2437744140625 2 481.2531 960.491647 0.44213 0.00021278 -0.084305 -4.0572E-05 0.35782 0.0001722 481.2529912921518 79.439 1.427 79.439 78.683 80.11 0 138 40 4 0 0 0 0.52597 1 15321 15321 26.884 0 1 58446000 14125 6333 9165 9168 14215 14215 0.00982078660570096 ETVNLDAPP 9 Unmodified _ETVNLDAPP_ 0 0 0 REV__LRRC4C|p.P562Qfs*34|1|0.35|ENSG00000148948|chr11:40114608-40114608|G/-|frameshift_variant REV__LRRC4C|p.P562Qfs*34|1|0.35|ENSG00000148948|chr11:40114608-40114608|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7416687011719 2 478.24019 954.465826 0.20828 9.961E-05 -0.51651 -0.00024702 -0.30822 -0.0001474 478.2399028771986 33.59 0.52002 31.443 31.187 31.707 -2.1468 23 14 2 0 0 0 0.62314 1 5861 5861 16.942 0 1 856300 + 14126 16992 9166 9169 14216 14216 -0.013228155817159859 ETVNLDAPP 9 Unmodified _ETVNLDAPP_ 0 0 0 REV__LRRC4C|p.P562Qfs*34|1|0.35|ENSG00000148948|chr11:40114608-40114608|G/-|frameshift_variant REV__LRRC4C|p.P562Qfs*34|1|0.35|ENSG00000148948|chr11:40114608-40114608|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74224853515625 2 478.24019 954.465826 0.40327 0.00019286 -0.47713 -0.00022818 -0.073851 -3.5319E-05 478.2398800245033 33.723 0.52482 31.507 31.216 31.74 -2.2158 23 14 2 0 0 0 0.6797 1 5897 5897 11.64 0.81637 1 885850 + 14127 16992 9166 9169 14217 14217 -0.013228155817159859 ETVNLFRLS 9 Unmodified _ETVNLFRLS_ 0 0 0 REV__ENSG00000137766|ENST00000260323|UNC13C REV__ENSG00000137766|ENST00000260323|UNC13C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 111.46 1 106.97 106.47 107.47 -4.4915 0 0 0 0.23508 1 21393 21393 7.1017 0 1 + 14128 16407 9167 9170 14218 14218 0.0461712798901317 ETVNLNNVY 9 Unmodified _ETVNLNNVY_ 0 0 0 REV__nc|ENSG00000291237|P04179-3|SOD2 REV__nc|ENSG00000291237|P04179-3|SOD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2660522460938 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 87.91 1 84.16 83.66 84.66 -3.7501 0 0 0 0.23411 1 16820 16820 13.508 1.8676 1 + 14129 24327 9168 9171 14219 14219 -0.015837416616705013 ETVPYGVTL 9 Unmodified _ETVPYGVTL_ 0 0 0 REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.262939453125 2 489.760758 977.506963 0.17876 8.7547E-05 0.57666 0.00028243 0.75542 0.00036997 489.76049121606115 82.406 0.48233 78.532 78.366 78.848 -3.8736 20 13 2 0 0 0 0.31714 1 15667 15667 30.637 1.555 1 582240 + 14130 13254 9169 9172 14220 14220 0.017309454577798533 ETVTWAVLF 9 Unmodified _ETVTWAVLF_ 0 0 0 REV__HACD1|p.L170F|1|0.26|ENSG00000165996|chr10:17599387-17599387|G/A|missense_variant REV__HACD1|p.L170F|1|0.26|ENSG00000165996|chr10:17599387-17599387|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.283203125 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 113.94 1 113.94 113.44 114.44 0 0 0 0 0.22621 1 22407 22407 15.847 0 1 + 14131 17815 9170 9173 14221 14221 0.024552247287601858 ETVVMEVL 8 Unmodified _ETVVMEVL_ 0 0 0 TIMD4|p.T29M|1|0.28|ENSG00000145850|chr5:156954729-156954729|G/A|missense_variant TIMD4|p.T29M|1|0.28|ENSG00000145850|chr5:156954729-156954729|G/A|missense_variant TIMD4|p.T29M|1|0.28|ENSG00000145850|chr5:156954729-156954729|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2450866699219 2 460.243886 918.47322 NaN NaN NaN NaN NaN NaN NaN 99.823 1 99.823 99.323 100.32 0 0 0 0 0.21323 1 19578 19578 14.582 1.0738 1 14132 25850 9171 9174 14222 14222 0.01072200694352432 ETVVMEVL 8 Unmodified _ETVVMEVL_ 0 0 0 TIMD4|p.T29M|1|0.28|ENSG00000145850|chr5:156954729-156954729|G/A|missense_variant TIMD4|p.T29M|1|0.28|ENSG00000145850|chr5:156954729-156954729|G/A|missense_variant TIMD4|p.T29M|1|0.28|ENSG00000145850|chr5:156954729-156954729|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2435302734375 2 460.243886 918.47322 NaN NaN NaN NaN NaN NaN NaN 103.93 1 99.714 99.214 100.21 -4.2183 0 0 0 0.21323 1 20437 20437 14.582 0 1 14133 25850 9171 9174 14223 14223 0.01072200694352432 ETVVVADVE 9 Unmodified _ETVVVADVE_ 0 0 0 REV__ENSG00000143458|ENST00000368918|GABPB2 REV__ENSG00000143458|ENST00000368918|GABPB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2492980957031 2 480.747847 959.481142 -0.26657 -0.00012815 0.18914 9.093E-05 -0.077422 -3.7221E-05 480.7478822860588 111.26 0.75894 106.84 106.48 107.23 -4.4231 52 21 4 0 0 0 0.22334 1 21982 21982 36.044 7.5574 1 6300800 + 14134 16730 9172 9175 14224 14224 -0.00021948784524283838 ETVVYVNDGR 10 Unmodified _ETVVYVNDGR_ 0 0 0 REV__ENST00000531184.5_1_8:144641759-144643375:+|nuORF REV__ENST00000531184.5_1_8:144641759-144643375:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3173828125 2 576.288202 1150.56185 0.55986 0.00032264 -0.74201 -0.00042761 -0.18215 -0.00010497 576.2879384110348 43.936 0.95749 43.936 43.433 44.39 0 57 27 4 0 0 0 0.25854 1 8200 8200 0.84494 0 1 15356000 + 14135 14925 9173 9176 14225 14225 -0.0074066774163839 ETWTDSHPN 9 Unmodified _ETWTDSHPN_ 0 0 0 REV__ENSG00000197429|ENST00000396478|IPP REV__ENSG00000197429|ENST00000396478|IPP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7792358398438 2 543.727978 1085.4414 0.040395 2.1964E-05 2.722 0.00148 2.7624 0.001502 543.7297504906958 43.598 0.31784 40.851 40.659 40.977 -2.7475 13 8 2 0 0 0 0.84208 1 7834 7834 7.2892 3.6927 1 515370 + 14136 19335 9174 9177 14226 14226 -0.09790075735213577 ETYGHPVI 8 Unmodified _ETYGHPVI_ 0 0 0 REV__VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant REV__VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2309265136719 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 124.73 1 120.13 119.63 120.63 -4.5984 0 0 0 0.20568 1 24597 24597 20.871 6.2895 1 + 14137 15943 9175 9178 14227 14227 -0.01086477027968158 ETYPVSSPKS 10 Unmodified _ETYPVSSPKS_ 0 0 0 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7716674804688 2 547.771854 1093.52915 -0.080891 -4.431E-05 -0.66929 -0.00036662 -0.75018 -0.00041093 547.7716497552359 105.36 0.45782 101.1 100.81 101.27 -4.2638 20 12 2 0 0 0 0.59928 1 20701 20701 19.257 4.4187 1 1043700 14138 263 9176 9179 14228 14228 -0.01386874864465426 ETYVMEFY 8 Unmodified _ETYVMEFY_ 0 0 0 REV__tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1 REV__tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27685546875 2 541.230976 1080.4474 NaN NaN NaN NaN NaN NaN NaN 35.209 1 32.815 32.315 33.315 -2.3938 0 0 0 0.21486 1 6480 6480 10.183 2.8942 1 + 14139 24845 9177 9180 14229 14229 -0.08960693547919618 EVAAAAASAI 10 Unmodified _EVAAAAASAI_ 0 0 0 REV__ENSG00000103485|ENST00000395384|QPRT REV__ENSG00000103485|ENST00000395384|QPRT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2356872558594 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 70.189 1 66.94 66.44 67.44 -3.2492 0 0 0 0.22559 1 13656 13656 17.113 4.5813 1 + 14140 14882 9178 9181 14230 14230 0.01901505626449307 EVAAAAASAI 10 Unmodified _EVAAAAASAI_ 0 0 0 REV__ENSG00000103485|ENST00000395384|QPRT REV__ENSG00000103485|ENST00000395384|QPRT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2161865234375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 70.381 1 66.914 66.414 67.414 -3.467 0 0 0 0.22552 1 13328 13328 18.146 5.6148 1 + 14141 14882 9178 9181 14231 14231 0.01901505626449307 EVAARLARA 9 Unmodified _EVAARLARA_ 0 0 0 REV__ENSG00000181284|ENST00000323206|TMEM102 REV__ENSG00000181284|ENST00000323206|TMEM102 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7439270019531 2 478.785433 955.556313 NaN NaN NaN NaN NaN NaN NaN 53.401 1 50.313 49.813 50.813 -3.0876 0 0 0 0.23508 1 9829 9829 10.824 1.4765 1 + 14142 18726 9179 9182 14232 14232 0.0767569825721921 EVAAVTSKNY 10 Unmodified _EVAAVTSKNY_ 0 0 0 nc|ENSG00000161249|Q6E0U4-14|DMKN;nc|ENSG00000161249|Q6E0U4-12|DMKN;nc|ENSG00000161249|Q6E0U4-4|DMKN;CON__A3EZ79 nc|ENSG00000161249|Q6E0U4-14|DMKN nc|ENSG00000161249|Q6E0U4-14|DMKN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27294921875 2 541.279846 1080.54514 0.2041 0.00011048 -0.25289 -0.00013689 -0.048789 -2.6408E-05 541.279704180669 93.109 0.9001 89.118 88.587 89.487 -3.9907 103 25 5 0 0 0 0.35262 1 18142 18142 0.51642 0 1 148830000 + 14143 636 9180 9183 14233 14233 0.008088313724329055 EVAKKYVEI 9 Unmodified _EVAKKYVEI_ 0 0 0 REV__nc|ENSG00000140463|Q96RK4-3|BBS4 REV__nc|ENSG00000140463|Q96RK4-3|BBS4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2160339355469 3 360.209613 1077.60701 NaN NaN NaN NaN NaN NaN NaN 88.089 1 84.094 83.594 84.594 -3.9953 0 0 0 0.23508 1 16777 16777 7.609 0 1 + 14144 13182 9181 9184 14234 14234 0.0713118279156788 EVANWVKDR 9 Unmodified _EVANWVKDR_ 0 0 0 tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 373.12750244140625 3 372.864729 1115.57236 -0.51817 -0.00019321 0.050559 1.8852E-05 -0.46761 -0.00017435 372.86472625129755 60.9 0.59834 57.676 57.276 57.874 -3.2237 28 16 3 0 0 0 0.88109 1 11341 11341 0.15932 0.15932 1 1594300 14145 26087 9182 9185 14235 14235 0.01919359703470036 EVANWVKDR 9 Unmodified _EVANWVKDR_ 0 0 0 tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 372.864729 1115.57236 -0.43542 -0.00016235 -0.42884 -0.0001599 -0.86426 -0.00032225 372.86482672052364 57.83 0.48854 57.83 57.543 58.032 0 0.13152 -0.00016837 NaN 0.15932 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 912330 14146 26087 9182 9185 0.01919359703470036 EVANWVKDR 9 Unmodified _EVANWVKDR_ 0 0 0 tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 372.864729 1115.57236 -0.23706 -8.8393E-05 -0.087816 -3.2744E-05 -0.32488 -0.00012114 372.86474614079634 60.571 0.48169 57.638 57.41 57.891 -2.9333 -0.060776 0.0002131 NaN 0.15932 24 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1131300 14147 26087 9182 9185 0.01919359703470036 EVANWVKDR 9 Unmodified _EVANWVKDR_ 0 0 0 tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 372.864729 1115.57236 0.095525 3.5618E-05 -0.72285 -0.00026953 -0.62733 -0.00023391 372.86448465577274 61.02 0.55379 57.65 57.343 57.896 -3.3694 -0.048514 -0.00049725 NaN 0.15932 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1019200 14148 26087 9182 9185 0.01919359703470036 EVAPRCLQ 8 Unmodified _EVAPRCLQ_ 0 0 0 REV__ENST00000438489.6_1_19:16849058-16926137:+|nuORF REV__ENST00000438489.6_1_19:16849058-16926137:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386779785156 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 108.75 1 108.75 108.25 109.25 0 0 0 0 0.21486 1 21386 21386 7.9102 0 1 + 14149 21685 9183 9186 14236 14236 0.003732718485366604 EVASAGPIDG 10 Unmodified _EVASAGPIDG_ 0 0 0 REV__tr|U7SWS9|U7SWS9_FUSNUS-ribosylhomocysteinelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=luxSPE=3SV=1 REV__tr|U7SWS9|U7SWS9_FUSNUS-ribosylhomocysteinelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=luxSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2225646972656 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 133.16 1 128.36 127.86 128.86 -4.799 0 0 0 0.22588 1 25629 25629 13.042 2.9685 1 + 14150 25208 9184 9187 14237 14237 -0.0261138861579866 EVATERFFFY 10 Unmodified _EVATERFFFY_ 0 0 0 REV__ENST00000434030.1_1_3:50310607-50311493:+|nuORF REV__ENST00000434030.1_1_3:50310607-50311493:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2170715332031 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 91.91 1 87.816 87.316 88.316 -4.0946 0 0 0 0.22588 1 17505 17505 6.1918 1.4759 1 + 14151 13941 9185 9188 14238 14238 -0.022866201850774814 EVATERFFFY 10 Unmodified _EVATERFFFY_ 0 0 0 REV__ENST00000434030.1_1_3:50310607-50311493:+|nuORF REV__ENST00000434030.1_1_3:50310607-50311493:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2362976074219 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 115.08 1 110.76 110.26 111.26 -4.3136 0 0 0 0.22588 1 22158 22158 6.1918 2.8722 1 + 14152 13941 9185 9188 14239 14239 -0.022866201850774814 EVATERFFFY 10 Unmodified _EVATERFFFY_ 0 0 0 REV__ENST00000434030.1_1_3:50310607-50311493:+|nuORF REV__ENST00000434030.1_1_3:50310607-50311493:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2152404785156 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 131.03 1 126.26 125.76 126.76 -4.7725 0 0 0 0.22588 1 25223 25223 3.5871 1.3343 1 + 14153 13941 9185 9188 14240 14240 -0.022866201850774814 EVCELYDQVY 10 Unmodified _EVCELYDQVY_ 0 0 0 REV__ENSG00000168556|ENST00000302327|ING2 REV__ENSG00000168556|ENST00000302327|ING2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7551879882812 2 630.776279 1259.538 0.95402 0.00060177 -0.35936 -0.00022668 0.59466 0.0003751 630.7761191706716 135.5 0.10251 130.86 130.8 130.9 -4.6399 4 2 2 0 0 0 0.75565 1 26728 26728 3.9444 0 1 961660 + 14154 18035 9186 9189 14241 14241 -0.08138269290316202 EVCRKYDP 8 Unmodified _EVCRKYDP_ 0 0 0 REV__tr|U7T0T7|U7T0T7_FUSNUPutativeK(+)-stimulatedpyrophosphate-energizedsodiumpumpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hppAPE=3SV=1 REV__tr|U7T0T7|U7T0T7_FUSNUPutativeK(+)-stimulatedpyrophosphate-energizedsodiumpumpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hppAPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 505.13677978515625 2 505.242209 1008.46987 -0.083817 -4.2348E-05 0.76212 0.00038506 0.67831 0.00034271 505.24254041141296 64.974 2.1016 61.516 60.141 62.243 -3.4581 99 59 3 0 0 0 0.97173 1 12233 12233 12.532 0 1 2677900 + 14155 25276 9187 9190 14242 14242 -0.03403049359656052 EVCRQVQQP 9 Unmodified _EVCRQVQQP_ 0 0 0 REV__ENSG00000105135|ENST00000263383|ILVBL REV__ENSG00000105135|ENST00000263383|ILVBL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.787841796875 2 543.771665 1085.52878 0.33239 0.00018074 2.1154 0.0011503 2.4478 0.001331 543.7716821910196 126.43 0.18549 126.43 126.32 126.5 0 6 4 2 0 0 0 0.85111 1 24951 24951 3.5965 0 1 1548700 + 14156 14963 9188 9191 14243 14243 -0.010565730653070204 EVDEKGMI 8 Unmodified _EVDEKGMI_ 0 0 0 REV__tr|U7SSW7|U7SSW7_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01401PE=4SV=1 REV__tr|U7SSW7|U7SSW7_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01401PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24737548828125 2 460.723318 919.432083 NaN NaN NaN NaN NaN NaN NaN 135.37 1 130.47 129.97 130.97 -4.8951 0 0 0 0.21452 1 26004 26004 13.508 0 1 + 14157 25072 9189 9192 14244 14244 -0.030855603451186653 EVDELSPEL 9 Unmodified _EVDELSPEL_ 0 0 0 REV__ENSG00000101442|ENST00000243903|ACTR5 REV__ENSG00000101442|ENST00000243903|ACTR5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.18536376953125 3 344.169484 1029.48662 NaN NaN NaN NaN NaN NaN NaN 96.564 1 92.645 92.145 93.145 -3.9194 0 0 0 0.19057 1 18528 18528 2.6312 1.4164 1 + 14158 14788 9190 9193 14245 14245 -0.02694269992707632 EVDKAVKLQG 10 Unmodified _EVDKAVKLQG_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;REV__SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7819213867188 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 151.63 1 146.39 145.89 146.89 -5.2365 0 0 0 2.8426 1 29392 29392 0.51642 0 1 + 14159 14106;24761;24760 9191 9194 14246 14246 0.06869397160448898 EVDKPTPPP 9 Unmodified _EVDKPTPPP_ 0 0 0 REV__ENST00000297063.10_1_7:36396923-36397070:-|nuORF REV__ENST00000297063.10_1_7:36396923-36397070:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2761535644531 2 490.258382 978.502212 -0.12892 -6.3204E-05 0.94463 0.00046311 0.81571 0.00039991 490.2588079783634 63.751 0.45085 63.751 63.401 63.852 0 17 12 2 0 0 0 0.5059 1 12195 12195 19.257 1.1106 1 1786600 + 14160 20377 9192 9195 14247 14247 0.012100613149868877 EVDKSPGPGVP 11 Unmodified _EVDKSPGPGVP_ 0 0 0 REV__ENST00000473338.1_1_2:106710484-106713932:-|nuORF REV__ENST00000473338.1_1_2:106710484-106713932:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2810668945312 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 39.979 1 37.43 36.93 37.93 -2.5491 0 0 0 0.22943 1 7438 7438 8.7454 0.15213 1 + 14161 22071 9193 9196 14248 14248 0.008088313724556428 EVDLSRHPL 9 Unmodified _EVDLSRHPL_ 0 0 0 REV__ENSG00000120071|ENST00000432791|KANSL1;REV__KANSL1|p.K267Sfs*12|1|0.22|ENSG00000120071|chr17:46171344-46171344|T/-|frameshift_variant REV__ENSG00000120071|ENST00000432791|KANSL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2759399414062 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 164.89 1 160.11 159.61 160.61 -4.7898 0 0 0 0.23508 1 32983 32983 11.64 2.2929 1 + 14162 15609;23694 9194 9197 14249 14249 0.031759573291765264 EVDMDLDSY 9 Unmodified _EVDMDLDSY_ 0 0 0 UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.K1847Ffs*66|1|0.07|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.D384Rfs*6|1|0.19|ENSG00000152818|chr6:144437652-144437653|-/C|frameshift_variant;UTRN|p.L449Pfs*6|1|0.44|ENSG00000152818|chr6:144438843-144438844|-/CC|frameshift_variant;UTRN|p.K951Rfs*32|2|0.22|ENSG00000152818|chr6:144461335-144461335|A/-|frameshift_variant;UTRN|p.L985Wfs*4|1|0.07|ENSG00000152818|chr6:144462753-144462754|-/GGGC|frameshift_variant UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7936401367188 2 543.71843 1085.42231 NaN NaN NaN NaN NaN NaN NaN 156.61 1 151.34 150.84 151.84 -5.2712 0 0 0 0.23508 1 30376 30376 7.9102 0 1 14163 4942 9195 9198 14250 14250 -0.11698793141135866 EVDNRFFTL 9 Unmodified _EVDNRFFTL_ 0 0 0 ENST00000401087.3_3_1:149089877-149094694:-|nuORF ENST00000401087.3_3_1:149089877-149094694:-|nuORF ENST00000401087.3_3_1:149089877-149094694:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2130432128906 3 380.860984 1139.56112 -0.019219 -7.3197E-06 0.18252 6.9516E-05 0.1633 6.2196E-05 380.86093263806146 74.671 0.98681 74.671 74.151 75.138 0 39 27 2 0 0 0 0.87708 1 14430 14430 4.1895 2.2831 1 1826600 14164 9511 9196 9199 14251 14251 -0.003074623906513807 EVDPIGHLY 9 Unmodified _EVDPIGHLY_ 0 0 0 MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant;ENSG00000221867|ENST00000370278|MAGEA3 MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.265380859375 2 521.763832 1041.51311 0.2055 0.00010722 -0.10515 -5.4865E-05 0.10035 5.2357E-05 521.763724321638 111.45 1.2886 111.45 110.96 112.25 0 131 36 6 0 0 0 6.5908E-05 7 21893 21842;21848;21893;21933;21935;21981;22028 129.2 67.843 1 188940000 14165 7762 9197 9200 14252;14253;14254;14255;14256;14257;14258 14254 -0.00598536310712916 EVDPIGHLY 9 Unmodified _EVDPIGHLY_ 0 0 0 MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant;ENSG00000221867|ENST00000370278|MAGEA3 MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2654418945312 2 521.763832 1041.51311 -0.17896 -9.3377E-05 0.22204 0.00011585 0.043076 2.2475E-05 521.7639027971255 115.91 2.1454 111.43 110.28 112.42 -4.486 152 61 5 0 0 0 6.5908E-05 7 22821 22771;22775;22821;22867;22868;22911;22953 129.2 67.843 1 189380000 14166 7762 9197 9200 14259;14260;14261;14262;14263;14264;14265 14261 -0.00598536310712916 EVDPIGHLY 9 Unmodified _EVDPIGHLY_ 0 0 0 MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant;ENSG00000221867|ENST00000370278|MAGEA3 MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2653198242188 2 521.763832 1041.51311 -0.44743 -0.00023345 0.53699 0.00028018 0.089562 4.673E-05 521.7640956340035 115.99 1.9474 111.41 110.66 112.61 -4.5815 152 55 5 0 0 0 2.3589E-07 7 22265 22227;22263;22265;22304;22308;22351;22354 144.66 73.523 1 184580000 14167 7762 9197 9200 14266;14267;14268;14269;14270;14271;14272 14268 -0.00598536310712916 EVDPIGHLY 9 Unmodified _EVDPIGHLY_ 0 0 0 MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant;ENSG00000221867|ENST00000370278|MAGEA3 MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.265380859375 2 521.763832 1041.51311 0.55561 0.0002899 -0.39467 -0.00020593 0.16093 8.3969E-05 521.7636274141245 115.69 1.5826 111.33 110.86 112.44 -4.3585 142 44 5 0 0 0 6.5908E-05 5 22251 22240;22247;22251;22335;22368 129.2 67.843 1 184260000 14168 7762 9197 9200 14273;14274;14275;14276;14277 14275 -0.00598536310712916 EVDPLIPIEA 10 Unmodified _EVDPLIPIEA_ 0 0 0 REV__ENSG00000173250|ENST00000311104|GPR151 REV__ENSG00000173250|ENST00000311104|GPR151 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.79345703125 2 548.300247 1094.58594 0.37342 0.00020474 -0.78461 -0.0004302 -0.4112 -0.00022546 548.2995406143109 122.65 0.99453 118.12 117.58 118.58 -4.5305 56 25 3 0 0 0 0.51199 1 23555 23555 24.021 7.0783 1 6101500 + 14169 18345 9198 9201 14278 14278 0.042431726920540314 EVDSDPVL 8 Unmodified _EVDSDPVL_ 0 0 0 REV__ENSG00000196730|ENST00000408954|DAPK1 REV__ENSG00000196730|ENST00000408954|DAPK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21551513671875 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 136.85 1 132.01 131.51 132.51 -4.84 0 0 0 0.21486 1 26357 26357 9.3474 3.587 1 + 14170 19276 9199 9202 14279 14279 -0.028581933643749835 EVDVIVEPVP 10 Unmodified _EVDVIVEPVP_ 0 0 0 REV__ENSG00000198879|ENST00000397167|SFMBT2 REV__ENSG00000198879|ENST00000397167|SFMBT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7833251953125 2 548.300247 1094.58594 0.37342 0.00020474 -0.78461 -0.0004302 -0.4112 -0.00022546 548.2995406143109 122.65 0.99453 118.12 117.58 118.58 -4.5305 56 25 3 0 0 0 0.32088 1 23573 23573 36.127 5.4905 1 6101500 + 14171 19471 9200 9203 14280 14280 0.04243172692076769 EVDVQAPTA 9 Unmodified _EVDVQAPTA_ 0 0 0 AHNAK2|p.K3612T|1|0.39|ENSG00000185567|chr14:104944616-104944616|T/G|missense_variant AHNAK2|p.K3612T|1|0.39|ENSG00000185567|chr14:104944616-104944616|T/G|missense_variant AHNAK2|p.K3612T|1|0.39|ENSG00000185567|chr14:104944616-104944616|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2468566894531 2 465.232364 928.450176 -0.028101 -1.3073E-05 -0.017069 -7.941E-06 -0.04517 -2.1014E-05 465.23227849027165 98.309 0.90518 94.176 93.915 94.82 -4.1326 47 25 3 0 0 0 0.35443 1 19260 19260 28.487 3.813 1 1888600 14172 105 9201 9204 14281 14281 -0.01691102098754982 EVDVQMPV 8 Unmodified _EVDVQMPV_ 0 0 0 PKD1|p.V1800M|1|0.47|ENSG00000008710|chr16:2109769-2109769|C/T|missense_variant PKD1|p.V1800M|1|0.47|ENSG00000008710|chr16:2109769-2109769|C/T|missense_variant PKD1|p.V1800M|1|0.47|ENSG00000008710|chr16:2109769-2109769|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2392883300781 2 458.725861 915.437169 NaN NaN NaN NaN NaN NaN NaN 115.65 1 111.3 110.8 111.8 -4.3519 0 0 0 0.17894 1 22265 22265 32.117 12.678 1 14173 12795 9202 9205 14282 14282 -0.02393256482491779 EVDWTMYEM 9 Unmodified _EVDWTMYEM_ 0 0 0 REV__CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant REV__CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2857055664062 2 602.238475 1202.4624 NaN NaN NaN NaN NaN NaN NaN 159.74 1 154.51 154.01 155.01 -5.2299 0 0 0 0.23508 1 31006 31006 2.0598 0 1 + 14174 13585 9203 9206 14283 14283 -0.13073569742232394 EVDWTMYEM 9 Unmodified _EVDWTMYEM_ 0 0 0 REV__CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant REV__CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2718505859375 2 602.238475 1202.4624 NaN NaN NaN NaN NaN NaN NaN 173.93 1 169.04 168.54 169.54 -4.8845 0 0 0 0.23508 1 34543 34543 4.3292 0.73274 1 + 14175 13585 9203 9206 14284 14284 -0.13073569742232394 EVEAQVTPG 9 Unmodified _EVEAQVTPG_ 0 0 0 ENSG00000086288|ENST00000199447|NME8 ENSG00000086288|ENST00000199447|NME8 ENSG00000086288|ENST00000199447|NME8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2487487792969 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 81.649 1 81.649 81.149 82.149 0 0 0 0 0.23508 1 15903 15903 12.532 3.1841 1 14176 1693 9204 9207 14285 14285 -0.01691102098754982 EVEDEPKHDY 10 Unmodified _EVEDEPKHDY_ 0 0 0 REV__ENST00000472077.1_1_2:27604468-27607956:-|nuORF REV__ENST00000472077.1_1_2:27604468-27607956:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.77490234375 2 630.772582 1259.53061 NaN NaN NaN NaN NaN NaN NaN 107.27 1 102.86 102.36 103.36 -4.4121 0 0 0 0.22588 1 20579 20579 6.2058 0.9089 1 + 14177 15415 9205 9208 14286 14286 -0.08877285566359205 EVEEIVFP 8 Unmodified _EVEEIVFP_ 0 0 0 nc|ENSG00000170558|P19022-2|CDH2;ENSG00000170558|ENST00000269141|CDH2 nc|ENSG00000170558|P19022-2|CDH2 nc|ENSG00000170558|P19022-2|CDH2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24951171875 2 481.247483 960.480414 NaN NaN NaN NaN NaN NaN NaN 76.677 1 76.677 76.177 77.177 0 0 0 0 0.22628 1 14901 14901 20.454 0 1 14178 6080 9206 9209 14287 14287 -0.0014074343357606267 EVEFLTGKR 9 Unmodified _EVEFLTGKR_ 0 0 0 nc|ENSG00000133477|Q8NEG4-2|FAM83F;ENSG00000133477|ENST00000333407|FAM83F nc|ENSG00000133477|Q8NEG4-2|FAM83F nc|ENSG00000133477|Q8NEG4-2|FAM83F MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2010498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 114.36 1 114.36 113.86 114.86 0 0 0 0 0.23508 1 22497 22497 2.7352 0 1 14179 3806 9207 9210 14288 14288 0.046171279889904326 EVEFLTGKR 9 Unmodified _EVEFLTGKR_ 0 0 0 nc|ENSG00000133477|Q8NEG4-2|FAM83F;ENSG00000133477|ENST00000333407|FAM83F nc|ENSG00000133477|Q8NEG4-2|FAM83F nc|ENSG00000133477|Q8NEG4-2|FAM83F MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201171875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 158.38 1 153.59 153.09 154.09 -4.7952 0 0 0 0.23508 1 31495 31495 2.7352 0 1 14180 3806 9207 9210 14289 14289 0.046171279889904326 EVEFLTGKR 9 Unmodified _EVEFLTGKR_ 0 0 0 nc|ENSG00000133477|Q8NEG4-2|FAM83F;ENSG00000133477|ENST00000333407|FAM83F nc|ENSG00000133477|Q8NEG4-2|FAM83F nc|ENSG00000133477|Q8NEG4-2|FAM83F MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.19970703125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 69.418 1 66.028 65.528 66.528 -3.3903 0 0 0 0.23508 1 13128 13128 4.897 0 1 14181 3806 9207 9210 14290 14290 0.046171279889904326 EVEIIEGWV 9 Unmodified _EVEIIEGWV_ 0 0 0 nc|ENSG00000132481|Q96LD4-2|TRIM47;ENST00000587339.2_2_17:73870566-73874273:-|nuORF;ENSG00000132481|ENST00000254816|TRIM47 nc|ENSG00000132481|Q96LD4-2|TRIM47 nc|ENSG00000132481|Q96LD4-2|TRIM47 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 358.04876708984375 3 358.521969 1072.54408 0.57534 0.00020627 -1.0569 -0.00037893 -0.4816 -0.00017266 358.52159460024995 23.607 0.4179 22.054 21.834 22.252 -1.5532 20 11 2 0 0 0 0.8799 1 4101 4101 4.897 3.2444 1 3210400 14182 3734 9208 9211 14291 14291 0.010706170035291507 EVEKLGLS 8 Unmodified _EVEKLGLS_ 0 0 0 REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1 REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.215087890625 2 437.74765 873.480748 0.18451 8.077E-05 -0.082468 -3.61E-05 0.10204 4.4669E-05 437.7475449383109 73.569 0.66591 69.892 69.542 70.208 -3.6764 39 18 3 0 0 0 0.88839 1 13933 13933 22.736 0 1 3820700 + 14183 16716 9209 9212 14292 14292 0.03894676286279264 EVEKRNRL 8 Unmodified _EVEKRNRL_ 0 0 0 nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 nc|ENSG00000141367|Q00610-2|CLTC;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant nc|ENSG00000141367|Q00610-2|CLTC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2692260742188 2 522.301447 1042.58834 NaN NaN NaN NaN NaN NaN NaN 120.35 1 115.7 115.2 116.2 -4.645 0 0 0 0.21486 1 23100 23100 12.532 0 1 14184 4356;588 9210 9213 14293 14293 0.06875065940380409 EVEKYEEYR 9 Unmodified _EVEKYEEYR_ 0 0 0 REV__ENSG00000178917|ENST00000436261|ZNF852 REV__ENSG00000178917|ENST00000436261|ZNF852 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7518920898438 2 622.793318 1243.57208 0.4117 0.0002564 -0.53816 -0.00033516 -0.12646 -7.876E-05 622.793090218563 99.451 0.62549 95.495 95.206 95.832 -3.9564 20 17 2 0 0 0 0.6329 1 19152 19152 10.824 0.67336 1 1704600 + 14185 18625 9211 9214 14294 14294 -0.039961048070381366 EVELLRSQL 9 Unmodified _EVELLRSQL_ 0 0 0 ENSG00000100982|ENST00000372409|PCIF1 ENSG00000100982|ENST00000372409|PCIF1 ENSG00000100982|ENST00000372409|PCIF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7808227539062 2 543.811313 1085.60807 0.092769 5.0449E-05 -0.23272 -0.00012656 -0.13995 -7.6107E-05 543.8111513062221 139.18 0.57799 134.23 133.95 134.53 -4.952 33 15 3 0 0 0 0.092695 1 26753 26753 19.626 8.727 1 3031000 14186 2028 9212 9215 14295 14295 0.06869397160471635 EVEMEGPE 8 Unmodified _EVEMEGPE_ 0 0 0 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23358154296875 2 460.189308 918.364063 NaN NaN NaN NaN NaN NaN NaN 113.32 1 108.86 108.36 109.36 -4.4539 0 0 0 0.23312 1 22327 22327 6.2058 0 1 14187 1535 9213 9216 14296 14296 -0.09838429995772913 EVEPMTNSDTG 11 Unmodified _EVEPMTNSDTG_ 0 0 0 REV__ENST00000491442.5_1_1:42314615-42314756:-|nuORF REV__ENST00000491442.5_1_1:42314615-42314756:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.260009765625 2 590.245343 1178.47613 NaN NaN NaN NaN NaN NaN NaN 68.889 1 68.889 68.389 69.389 0 0 0 0 0.23087 1 13327 13327 7.609 0.31972 1 + 14188 22319 9214 9217 14297 14297 -0.10596620709429772 EVEQVEEQY 9 Unmodified _EVEQVEEQY_ 0 0 0 nc|ENSG00000130595|P45378-4|TNNT3;nc|ENSG00000130595|P45378-5|TNNT3;nc|ENSG00000130595|P45378-7|TNNT3;nc|ENSG00000130595|P45378-6|TNNT3;ENSG00000130595|ENST00000278317|TNNT3;nc|ENSG00000130595|P45378-3|TNNT3;nc|ENSG00000130595|P45378|TNNT3 nc|ENSG00000130595|P45378-4|TNNT3 nc|ENSG00000130595|P45378-4|TNNT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3331298828125 2 576.756401 1151.49825 -0.011373 -6.5595E-06 0.77177 0.00044512 0.7604 0.00043856 576.7566722210137 91.283 0.96137 87.358 86.996 87.957 -3.9251 54 27 4 0 0 0 0.86532 1 17976 17976 2.0598 0.21551 1 4766700 14189 12320 9215 9218 14298 14298 -0.07144072969367699 EVERGKYY 8 Unmodified _EVERGKYY_ 0 0 0 tr|U7T5C1|U7T5C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00011PE=4SV=1 tr|U7T5C1|U7T5C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00011PE=4SV=1 tr|U7T5C1|U7T5C1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00011PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2600708007812 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 117.19 1 112.7 112.2 113.2 -4.486 0 0 0 0.21171 1 23101 23101 15.847 1.2655 1 14190 26463 9216 9219 14299 14299 -0.011194204534604069 EVERRWWRRRL 11 Unmodified _EVERRWWRRRL_ 0 0 0 ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.785888671875 3 547.97808 1640.91241 NaN NaN NaN NaN NaN NaN NaN 163.46 1 158.39 157.89 158.89 -5.0648 0 0 0 0.23698 1 31807 31807 0.45452 0.45452 1 14191 8455 9217 9220 14300 14300 0.11759011428148369 EVESRPANVS 10 Unmodified _EVESRPANVS_ 0 0 0 REV__ENSG00000011454|ENST00000373647|RABGAP1 REV__ENSG00000011454|ENST00000373647|RABGAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7965087890625 2 544.272552 1086.53055 0.084077 4.5761E-05 1.3207 0.0007188 1.4047 0.00076456 544.77626170624 129.63 0.20316 124.81 124.71 124.91 -4.8253 8 5 2 0 0 0 0.871 1 24889 24889 14.838 0 1 1391800 + 14192 13938 9218 9221 14301 14301 -0.009252407757003311 EVESVQWIP 9 Unmodified _EVESVQWIP_ 0 0 0 REV__ENSG00000198883|ENST00000535214|PNMA5 REV__ENSG00000198883|ENST00000535214|PNMA5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.793212890625 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 124.4 1 124.4 123.9 124.9 0 0 0 0 0.23508 1 24527 24527 7.2892 1.0834 1 + 14193 19473 9219 9222 14302 14302 -2.2671392343909247E-05 EVETKGRYL 9 Unmodified _EVETKGRYL_ 0 0 0 REV__ENST00000532132.5_1_11:118881994-118886068:+|nuORF REV__ENST00000532132.5_1_11:118881994-118886068:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.86798095703125 3 365.532868 1093.57677 -0.38437 -0.0001405 0.38908 0.00014222 0.0047141 1.7232E-06 365.86741403680094 56.293 0.41828 56.293 56.081 56.499 0 18 11 2 0 0 0 0.45972 1 10750 10750 8.1555 0 1 648070 + 14194 22784 9220 9223 14303 14303 0.03372824126381602 EVETKGRYL 9 Unmodified _EVETKGRYL_ 0 0 0 REV__ENST00000532132.5_1_11:118881994-118886068:+|nuORF REV__ENST00000532132.5_1_11:118881994-118886068:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 365.532868 1093.57677 -0.38437 -0.0001405 0.38908 0.00014222 0.0047141 1.7232E-06 365.86741403680094 56.293 0.41828 56.293 56.081 56.499 0 0.022674 -1.3224E-05 NaN 8.1555 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 648070 + 14195 22784 9220 9223 0.03372824126381602 EVETKGRYL 9 Unmodified _EVETKGRYL_ 0 0 0 REV__ENST00000532132.5_1_11:118881994-118886068:+|nuORF REV__ENST00000532132.5_1_11:118881994-118886068:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 365.532868 1093.57677 -0.30168 -0.00011027 0.3501 0.00012797 0.048417 1.7698E-05 365.5329280731453 59.176 0.41833 56.266 56.039 56.458 -2.9105 -0.0048174 -5.5976E-05 NaN 8.1555 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1251300 + 14196 22784 9220 9223 0.03372824126381602 EVETKGRYL 9 Unmodified _EVETKGRYL_ 0 0 0 REV__ENST00000532132.5_1_11:118881994-118886068:+|nuORF REV__ENST00000532132.5_1_11:118881994-118886068:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 365.532868 1093.57677 0.087662 3.2043E-05 -0.079848 -2.9187E-05 0.0078134 2.856E-06 365.5328612411657 59.56 0.51927 56.246 55.961 56.48 -3.3139 -0.024777 -0.00052745 NaN 8.1555 26 14 3 NaN NaN NaN NaN 0 NaN NaN 0 879090 + 14197 22784 9220 9223 0.03372824126381602 EVETKGRYL 9 Unmodified _EVETKGRYL_ 0 0 0 REV__ENST00000532132.5_1_11:118881994-118886068:+|nuORF REV__ENST00000532132.5_1_11:118881994-118886068:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 365.532868 1093.57677 -0.56402 -0.00020617 0.86894 0.00031762 0.30492 0.00011146 365.5330720843591 59.501 0.69515 56.278 55.769 56.464 -3.2237 0.0069207 0.00051298 NaN 8.1555 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 959410 + 14198 22784 9220 9223 0.03372824126381602 EVEWLAKS 8 Unmodified _EVEWLAKS_ 0 0 0 REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.253662109375 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 116.61 1 112.12 111.62 112.62 -4.486 0 0 0 0.21452 1 22991 22991 13.508 0 1 + 14199 17048 9221 9224 14304 14304 0.00982078660570096 EVEYGRLGLQP 11 Unmodified _EVEYGRLGLQP_ 0 0 0 nc|ENSG00000213859|Q693B1|KCTD11;ENSG00000213859|ENST00000333751|KCTD11 nc|ENSG00000213859|Q693B1|KCTD11 nc|ENSG00000213859|Q693B1|KCTD11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7776489257812 2 630.832777 1259.651 NaN NaN NaN NaN NaN NaN NaN 137.23 1 132.59 132.09 133.09 -4.6413 0 0 0 0.22943 1 27080 27080 8.7454 0.58988 1 14200 7705 9222 9225 14305 14305 0.031561672178895606 EVFADRGY 8 Unmodified _EVFADRGY_ 0 0 0 tr|U7T5Z1|U7T5Z1_FUSNU5-oxoprolinasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pxpAPE=3SV=1 tr|U7T5Z1|U7T5Z1_FUSNU5-oxoprolinasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pxpAPE=3SV=1 tr|U7T5Z1|U7T5Z1_FUSNU5-oxoprolinasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pxpAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7268371582031 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 128.13 1 123.31 122.81 123.81 -4.817 0 0 0 0.21486 1 24596 24596 10.183 0.83596 1 14201 26480 9223 9226 14306 14306 -0.03955665033333844 EVFFNIISR 9 Unmodified _EVFFNIISR_ 0 0 0 REV__nc|ENSG00000130226|P42658-2|DPP6 REV__nc|ENSG00000130226|P42658-2|DPP6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21917724609375 3 375.541475 1123.60259 -0.76198 -0.00028616 -1.8674 -0.00070127 -2.6293 -0.00098743 375.5404641185585 49.358 0.21274 46.352 46.276 46.488 -3.0068 7 5 2 0 0 0 0.87708 1 9070 9070 2.086 0.75648 1 315900 + 14202 15990 9224 9227 14307 14307 0.04573718368669688 EVFITEGKR 9 Unmodified _EVFITEGKR_ 0 0 0 REV__ENST00000474652.1_1_2:73441746-73447117:+|nuORF REV__ENST00000474652.1_1_2:73441746-73447117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 63.6 1 63.6 63.1 64.1 0 0 0 0 0.23508 1 12231 12231 10.8 3.1906 1 + 14203 22086 9225 9228 14308 14308 0.0461712798901317 EVFITEGKR 9 Unmodified _EVFITEGKR_ 0 0 0 REV__ENST00000474652.1_1_2:73441746-73447117:+|nuORF REV__ENST00000474652.1_1_2:73441746-73447117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 78.533 1 75.07 74.57 75.57 -3.4633 0 0 0 0.23508 1 15333 15333 6.6304 0.89852 1 + 14204 22086 9225 9228 14309 14309 0.0461712798901317 EVFKADSFADR 11 Unmodified _EVFKADSFADR_ 0 0 0 REV__nc|ENSG00000132326|O15055-2|PER2 REV__nc|ENSG00000132326|O15055-2|PER2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 642.8931884765625 2 642.814584 1283.61462 NaN NaN NaN NaN NaN NaN NaN 170.22 1 165.3 164.8 165.8 -4.9194 0 0 0 0.2321 1 33650 33650 6.6304 0.89852 1 + 14205 16106 9226 9229 14310 14310 -0.015847096788320414 EVFKRSEK 8 Unmodified _EVFKRSEK_ 0 0 0 ENST00000375587.7_2_9:95088363-95094616:+|nuORF ENST00000375587.7_2_9:95088363-95094616:+|nuORF ENST00000375587.7_2_9:95088363-95094616:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.1563415527344 3 341.525825 1021.55564 -0.31431 -0.00010734 0.033967 1.16E-05 -0.28034 -9.5744E-05 341.52581298493277 27.668 1.3852 27.668 27.25 28.635 0 52 39 2 0 0 0 0.89225 1 4886 4886 1.3295 0.70271 1 503640 14206 9236 9227 9230 14311 14311 0.04572858817527958 EVFKRSEK 8 Unmodified _EVFKRSEK_ 0 0 0 ENST00000375587.7_2_9:95088363-95094616:+|nuORF ENST00000375587.7_2_9:95088363-95094616:+|nuORF ENST00000375587.7_2_9:95088363-95094616:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 341.525825 1021.55564 0.34101 0.00011646 -0.53701 -0.0001834 -0.196 -6.6939E-05 341.52555794278896 29.661 1.1554 27.768 26.945 28.101 -1.8928 0.040664 -0.00040643 NaN 1.3295 42 32 2 NaN NaN NaN NaN 0 NaN NaN 0 537550 14207 9236 9227 9230 0.04572858817527958 EVFKRSEK 8 Unmodified _EVFKRSEK_ 0 0 0 ENST00000375587.7_2_9:95088363-95094616:+|nuORF ENST00000375587.7_2_9:95088363-95094616:+|nuORF ENST00000375587.7_2_9:95088363-95094616:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 341.525825 1021.55564 -0.17288 -5.9042E-05 0.053371 1.8227E-05 -0.11951 -4.0814E-05 341.52581199430625 29.821 1.5704 27.747 26.965 28.535 -2.0743 0.019332 0.00019846 NaN 1.3295 57 44 2 NaN NaN NaN NaN 0 NaN NaN 0 556220 14208 9236 9227 9230 0.04572858817527958 EVFLGMCY 8 Unmodified _EVFLGMCY_ 0 0 0 ENST00000371162.4_1_2:111996244-111996538:-|nuORF ENST00000371162.4_1_2:111996244-111996538:-|nuORF ENST00000371162.4_1_2:111996244-111996538:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25262451171875 2 481.211532 960.408511 0.062815 3.0228E-05 4.1044 0.0019751 4.1672 0.0020053 481.2135862583276 131.49 0.20963 126.64 126.49 126.7 -4.8527 9 5 2 0 0 0 0.53444 1 25241 25241 26.341 5.4701 1 457770 14209 9153 9228 9231 14312 14312 -0.07327697383288978 EVFNWLMWSKE 11 Unmodified _EVFNWLMWSKE_ 0 0 0 REV__ENSG00000139826|ENST00000375898|ABHD13 REV__ENSG00000139826|ENST00000375898|ABHD13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2647399902344 3 490.235834 1467.68567 NaN NaN NaN NaN NaN NaN NaN 58.097 1 58.097 57.597 58.597 0 0 0 0 0.22632 1 11114 11114 1.4551 0 1 + 14210 16545 9229 9232 14313 14313 -0.029463329656664428 EVGIGVVAE 9 Unmodified _EVGIGVVAE_ 0 0 0 ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2154541015625 2 436.739825 871.465098 0.38572 0.00016846 -2.1401 -0.00093466 -1.7544 -0.0007662 436.73966964311325 123.87 0.63824 119.14 118.82 119.46 -4.731 49 17 4 0 0 0 0.13708 1 23780 23780 46.021 3.9264 1 5561700 14211 1167 9230 9233 14314 14314 0.024223897692309038 EVGKNLPFIY 10 Unmodified _EVGKNLPFIY_ 0 0 0 SCN7A|p.K49N|1|0.22|ENSG00000136546|chr2:166477550-166477550|C/A|missense_variant SCN7A|p.K49N|1|0.22|ENSG00000136546|chr2:166477550-166477550|C/A|missense_variant SCN7A|p.K49N|1|0.22|ENSG00000136546|chr2:166477550-166477550|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2710571289062 2 590.324057 1178.63356 NaN NaN NaN NaN NaN NaN NaN 151.25 1 146.01 145.51 146.51 -5.2365 0 0 0 0.22569 1 29314 29314 15.847 1.9411 1 14212 25644 9231 9234 14315 14315 0.05138871682879653 EVGRGLPDL 9 Unmodified _EVGRGLPDL_ 0 0 0 nc|ENSG00000148680|P34969-3|HTR7;nc|ENSG00000148680|P34969-2|HTR7;ENSG00000148680|ENST00000336152|HTR7 nc|ENSG00000148680|P34969-3|HTR7 nc|ENSG00000148680|P34969-3|HTR7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7268981933594 2 478.263999 954.513445 NaN NaN NaN NaN NaN NaN NaN 145.28 1 140.21 139.71 140.71 -5.0671 0 0 0 0.21065 1 28069 28069 20.454 2.3073 1 14213 4756 9232 9235 14316 14316 0.03436883409131042 EVGSELASVPV 11 Unmodified _EVGSELASVPV_ 0 0 0 ZC3H7A|p.I490Yfs*41|2|0.18|ENSG00000122299|chr16:11767471-11767471|T/-|frameshift_variant;ENSG00000122299|ENST00000355758|ZC3H7A ZC3H7A|p.I490Yfs*41|2|0.18|ENSG00000122299|chr16:11767471-11767471|T/-|frameshift_variant ZC3H7A|p.I490Yfs*41|2|0.18|ENSG00000122299|chr16:11767471-11767471|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7750854492188 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 155.76 1 150.47 149.97 150.97 -5.2854 0 0 0 0.224 1 30212 30212 13.042 4.4492 1 14214 3217 9233 9236 14317 14317 0.021096981696246075 EVHDKFRRRAE 11 Unmodified _EVHDKFRRRAE_ 0 0 0 REV__ENSG00000141279|ENST00000322157|NPEPPS REV__ENSG00000141279|ENST00000322157|NPEPPS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7888488769531 3 481.591891 1441.75384 NaN NaN NaN NaN NaN NaN NaN 172.01 1 167.22 166.72 167.72 -4.7898 0 0 0 0.23698 1 35013 35013 1.2148 0 1 + 14215 16617 9234 9237 14318 14318 0.05063672729193058 EVHGTQVLPV 10 Unmodified _EVHGTQVLPV_ 0 0 0 ENST00000389168.6_1_17:17131347-17131596:-|nuORF ENST00000389168.6_1_17:17131347-17131596:-|nuORF ENST00000389168.6_1_17:17131347-17131596:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201904296875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 107.9 1 107.9 107.4 108.4 0 0 0 0 0.22588 1 21217 21217 3.5871 0.85186 1 14216 9353 9235 9238 14319 14319 0.046171279889904326 EVHLSATSK 9 Unmodified _EVHLSATSK_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 485.7468566894531 2 486.261456 970.50836 -0.47815 -0.00023251 -0.8943 -0.00043486 -1.3724 -0.00066737 486.2615184391333 24.56 0.20572 22.707 22.572 22.778 -1.8534 7 5 2 0 0 0 0.6226 1 3987 3987 4.897 4.8532 1 224010 + 14217 17178;24395 9236 9239 14320 14320 0.02192579546522211 EVHLSATSK 9 Unmodified _EVHLSATSK_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 486.261456 970.50836 0.13781 6.7013E-05 -0.1658 -8.0621E-05 -0.027984 -1.3608E-05 486.26147977255476 22.874 0.27704 22.874 22.749 23.026 0 0.089287 -6.7862E-05 NaN 4.897 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 571110 + 14218 17178;24395 9236 9239 0.02192579546522211 EVHLSATSK 9 Unmodified _EVHLSATSK_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 486.261456 970.50836 0.13744 6.6832E-05 0.29797 0.00014489 0.43542 0.00021173 486.26148825789414 24.308 0.24014 22.774 22.644 22.884 -1.5342 -0.011111 0.00038317 NaN 4.897 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 285610 + 14219 17178;24395 9236 9239 0.02192579546522211 EVHPHPLS 8 Unmodified _EVHPHPLS_ 0 0 0 REV__ENST00000503611.5_1_4:159092441-159092582:+|nuORF REV__ENST00000503611.5_1_4:159092441-159092582:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2379455566406 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 82.086 1 82.086 81.586 82.586 0 0 0 0 0.21486 1 15992 15992 12.532 3.1841 1 + 14220 22452 9237 9240 14321 14321 0.00036345066178000707 EVHPRPGQ 8 Unmodified _EVHPRPGQ_ 0 0 0 ENSG00000239697|ENST00000293825|TNFSF12;nc|ENSG00000239697|O43508-2|TNFSF12 ENSG00000239697|ENST00000293825|TNFSF12 ENSG00000239697|ENST00000293825|TNFSF12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.227783203125 2 460.240858 918.467164 -0.085852 -3.9512E-05 -1.0947 -0.00050384 -1.1806 -0.00054336 460.24022847293696 65.761 0.50587 62.714 62.478 62.984 -3.047 18 14 2 0 0 0 0.70613 1 12685 12685 13.508 1.8676 1 979110 14221 7838 9238 9241 14322 14322 0.0046686329772001045 EVIDVFEIM 9 Unmodified _EVIDVFEIM_ 0 0 0 nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP nc|ENSG00000100890|O15091-4|PRORP nc|ENSG00000100890|O15091-4|PRORP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7734375 2 547.775551 1093.53655 0.54695 0.00029961 3.9051 0.0021391 4.452 0.0024387 548.2791345414049 122.41 0.098564 117.72 117.65 117.75 -4.6873 4 2 2 0 0 0 0.38188 1 23491 23491 26.884 4.1474 1 899920 14222 2021 9239 9242 14323 14323 -0.006478585883996857 EVIPAPPAL 9 Unmodified _EVIPAPPAL_ 0 0 0 ENST00000561152.1_1_15:57211715-57212066:+|nuORF ENST00000561152.1_1_15:57211715-57212066:+|nuORF ENST00000561152.1_1_15:57211715-57212066:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7679138183594 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 138.23 1 133.31 132.81 133.81 -4.9216 0 0 0 0.20155 1 26578 26578 23.148 5.0134 1 14223 11298 9240 9243 14324 14324 0.06567857045604342 EVIRDSED 8 Unmodified _EVIRDSED_ 0 0 0 CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;ENSG00000016490|ENST00000394711|CLCA1 CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77239990234375 2 481.724904 961.435254 0.37806 0.00018212 0.56349 0.00027145 0.94155 0.00045357 481.725109223724 161.08 0.21167 155.82 155.7 155.91 -5.2526 6 5 2 0 0 0 1.0191 1 31247 31247 8.5933 3.3626 1 4205100 14224 566 9241 9244 14325 14325 -0.047005939667656094 EVIRENDHLYF 11 Unmodified _EVIRENDHLYF_ 0 0 0 MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant;nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK;ICK|p.A167Gfs*16|1|0.05|ENSG00000112144|chr6:53018493-53018494|-/C|frameshift_variant;nc|ENSG00000112144|Q9UPZ9-2|CILK1;ENSG00000112144|ENST00000676107|CILK1 MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.723388671875 3 478.905253 1433.69393 0.23742 0.0001137 -0.72709 -0.00034821 -0.48968 -0.00023451 479.2387846262268 75.591 0.83923 71.957 71.501 72.34 -3.6337 44 23 3 0 0 0 0.96051 1 14439 14439 6.2344 5.8677 1 3818400 14225 2652 9242 9245 14326 14326 -0.005570627246925142 EVITPNKGW 9 Unmodified _EVITPNKGW_ 0 0 0 REV__nc|ENSG00000089250|P29475-2|NOS1 REV__nc|ENSG00000089250|P29475-2|NOS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2573852539062 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 126.34 1 121.54 121.04 122.04 -4.7958 0 0 0 0.22962 1 24248 24248 14.838 5.4908 1 + 14226 14528 9243 9246 14327 14327 0.025174564432290936 EVKAVMRPYS 10 Unmodified _EVKAVMRPYS_ 0 0 0 tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1 tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1 tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2694702148438 2 590.313166 1178.61178 NaN NaN NaN NaN NaN NaN NaN 162.28 1 157.14 156.64 157.64 -5.1438 0 0 0 0.22566 1 31522 31522 16.149 1.7437 1 14227 26288 9244 9247 14328 14328 0.02961743662694971 EVKENAIIQ 9 Unmodified _EVKENAIIQ_ 0 0 0 REV__ENST00000551277.1_1_12:78334161-78341216:+|nuORF REV__ENST00000551277.1_1_12:78334161-78341216:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2655639648438 2 522.290214 1042.56587 0.52689 0.00027519 0.023474 1.226E-05 0.55037 0.00028745 522.2902707481124 116.75 0.66788 112.39 111.99 112.66 -4.3585 34 18 2 0 0 0 0.57447 1 22419 22419 14.838 1.3304 1 2834000 + 14228 14215 9245 9248 14329 14329 0.04629421752088092 EVKIVLLIKLF 11 Unmodified _EVKIVLLIKLF_ 0 0 0 ENST00000508262.2_2_4:86938383-87019884:-|nuORF ENST00000508262.2_2_4:86938383-87019884:-|nuORF ENST00000508262.2_2_4:86938383-87019884:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 657.9629516601562 2 657.941599 1313.86865 NaN NaN NaN NaN NaN NaN NaN 172.7 1 172.7 172.2 173.2 0 0 0 0 0.23698 1 35667 35667 1.3295 0.13619 1 14229 10710 9246 9249 14330 14330 0.2242658915845368 EVKKKMEKLK 10 Unmodified _EVKKKMEKLK_ 0 0 0 REV__nc|ENSG00000179057|Q8N9C0|IGSF22 REV__nc|ENSG00000179057|Q8N9C0|IGSF22 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7774658203125 2 630.889041 1259.76353 NaN NaN NaN NaN NaN NaN NaN 157.58 1 152.29 151.79 152.79 -5.2854 0 0 0 0.22588 1 30580 30580 7.609 0.97858 1 + 14230 18636 9247 9250 14331 14331 0.14403724690373565 EVKKNRKY 8 Unmodified _EVKKNRKY_ 0 0 0 tr|U7SYD1|U7SYD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00972PE=4SV=1 tr|U7SYD1|U7SYD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00972PE=4SV=1 tr|U7SYD1|U7SYD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00972PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.273681640625 2 532.81419 1063.61383 0.097499 5.1949E-05 2.0363 0.001085 2.1338 0.0011369 532.8151021595468 160.79 0.20821 160.79 160.64 160.85 0 6 5 2 0 0 0 0.87562 1 32283 32283 0.25148 0 1 1947700 14231 26278 9248 9251 14332 14332 0.0845654046281652 EVKLKKYRRV 10 Unmodified _EVKLKKYRRV_ 0 0 0 REV__ENSG00000119715|ENST00000644823|ESRRB REV__ENSG00000119715|ENST00000644823|ESRRB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 659.7979736328125 2 659.919521 1317.82449 NaN NaN NaN NaN NaN NaN NaN 167.93 1 167.93 167.43 168.43 0 0 0 0 2.8426 1 34349 34349 0.13989 0.13933 1 + 14232 15594 9249 9252 14333 14333 0.1782899778479532 EVKNKIASKY 10 Unmodified _EVKNKIASKY_ 0 0 0 nc|ENSG00000117519|Q15417-3|CNN3;ENSG00000117519|ENST00000370206|CNN3;CNN3|p.Q94Sfs*9|1|0.25|ENSG00000117519|chr1:94902225-94902226|-/A|frameshift_variant nc|ENSG00000117519|Q15417-3|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.27490234375 2 590.340238 1178.66592 NaN NaN NaN NaN NaN NaN NaN 161.65 1 156.51 156.01 157.01 -5.1438 0 0 0 0.22588 1 31398 31398 8.7454 0 1 14233 2990 9250 9253 14334 14334 0.08373659085918916 EVKPILEKL 9 Unmodified _EVKPILEKL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5552978515625 3 356.893625 1067.65905 -0.19067 -6.8048E-05 -0.25075 -8.949E-05 -0.44142 -0.00015754 356.89354872324566 127.42 0.62788 122.81 122.4 123.03 -4.6172 26 17 2 0 0 0 0.62137 1 25079 25079 0.073264 0.059998 1 1407300 14234 2320 9251 9254 14335 14335 0.1279234620533316 EVKRMAKAH 9 Unmodified _EVKRMAKAH_ 0 0 0 REV__ENST00000564622.1_1_16:72142206-72142311:+|nuORF REV__ENST00000564622.1_1_16:72142206-72142311:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5567932128906 3 357.202687 1068.58623 NaN NaN NaN NaN NaN NaN NaN 67.357 1 64.249 63.749 64.749 -3.1086 0 0 0 0.23508 1 13063 13063 8.7454 3.4485 1 + 14235 23093 9252 9255 14336 14336 0.05468313930896329 EVLAMLRHP 9 Unmodified _EVLAMLRHP_ 0 0 0 nc|ENSG00000099889|O00192-2|ARVCF;ENSG00000099889|ENST00000263207|ARVCF nc|ENSG00000099889|O00192-2|ARVCF nc|ENSG00000099889|O00192-2|ARVCF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26806640625 2 533.297319 1064.58008 NaN NaN NaN NaN NaN NaN NaN 127.34 1 127.34 126.84 127.84 0 0 0 0 0.19512 1 25133 25133 12.241 0 1 14236 1908 9253 9256 14337 14337 0.05037795699377057 EVLDKLQERIH 11 Unmodified _EVLDKLQERIH_ 0 0 0 REV__ENSG00000155367|ENST00000309276|PPM1J REV__ENSG00000155367|ENST00000309276|PPM1J MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 690.478271484375 2 690.385708 1378.75686 NaN NaN NaN NaN NaN NaN NaN 163.86 1 159.07 158.57 159.57 -4.7898 0 0 0 0.23087 1 32697 32697 7.609 2.7119 1 + 14237 17215 9254 9257 14338 14338 0.08263503063380995 EVLEDMAVLNQ 11 Unmodified _EVLEDMAVLNQ_ 0 0 0 REV__nc|ENSG00000138380|Q8N187-3|CARF REV__nc|ENSG00000138380|Q8N187-3|CARF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7670288085938 2 630.810653 1259.60675 1.1546 0.00072834 -1.9872 -0.0012536 -0.83263 -0.00052523 631.3086389326105 122.62 0.13776 118.07 118.02 118.16 -4.5476 5 3 2 0 0 0 0.7906 1 24191 24191 4.897 0 1 1120300 + 14238 16456 9255 9258 14339 14339 -0.012666049905874388 EVLEDMAVLNQ 11 Unmodified _EVLEDMAVLNQ_ 0 0 0 REV__nc|ENSG00000138380|Q8N187-3|CARF REV__nc|ENSG00000138380|Q8N187-3|CARF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 630.810653 1259.60675 0.71511 0.0004511 -7.3425 -0.0046318 -6.6274 -0.0041807 630.8041360367947 123.04 0.17959 118.31 118.25 118.43 -4.731 0.11797 -0.0033995 NaN 4.897 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 563950 + 14239 16456 9255 9258 -0.012666049905874388 EVLGHFPY 8 Unmodified _EVLGHFPY_ 0 0 0 ENSG00000090266|ENST00000247866|NDUFB2 ENSG00000090266|ENST00000247866|NDUFB2 ENSG00000090266|ENST00000247866|NDUFB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.241943359375 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 122.26 1 117.73 117.23 118.23 -4.5305 0 0 0 0.21323 1 23538 23538 14.582 2.0501 1 14240 1780 9256 9259 14340 14340 -0.011298866482889025 EVLKKKKTI 9 Unmodified _EVLKKKKTI_ 0 0 0 REV__EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant REV__EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7817993164062 2 543.865892 1085.71723 NaN NaN NaN NaN NaN NaN NaN 127.28 1 122.49 121.99 122.99 -4.7958 0 0 0 0.23508 1 24432 24432 4.3292 2.2695 1 + 14241 13812 9257 9260 14341 14341 0.1778002785060835 EVLKLRHIK 9 Unmodified _EVLKLRHIK_ 0 0 0 BCL10|p.N108H|1|0.09|ENSG00000142867|chr1:85270642-85270642|T/G|missense_variant BCL10|p.N108H|1|0.09|ENSG00000142867|chr1:85270642-85270642|T/G|missense_variant BCL10|p.N108H|1|0.09|ENSG00000142867|chr1:85270642-85270642|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 379.68170166015625 3 379.248514 1134.72371 NaN NaN NaN NaN NaN NaN NaN 177.02 1 172.12 171.62 172.62 -4.9008 0 0 0 0.19626 1 35301 35301 0.0033805 0 1 14242 307 9258 9261 14342 14342 0.16173965801954182 EVLKVLLLPA 10 Unmodified _EVLKVLLLPA_ 0 0 0 REV__PIK3R2|p.P126L|1|0.1|ENSG00000105647|chr19:18160525-18160525|C/T|missense_variant REV__PIK3R2|p.P126L|1|0.1|ENSG00000105647|chr19:18160525-18160525|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.76904296875 2 547.862818 1093.71108 NaN NaN NaN NaN NaN NaN NaN 120.18 1 120.18 119.68 120.68 0 0 0 0 0.22588 1 23687 23687 1.6526 0 1 + 14243 24471 9259 9262 14343 14343 0.16797509619095763 EVLQHLVMP 9 Unmodified _EVLQHLVMP_ 0 0 0 REV__nc|ENSG00000083312|Q92973-3|TNPO1 REV__nc|ENSG00000083312|Q92973-3|TNPO1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2681274414062 2 533.291702 1064.56885 NaN NaN NaN NaN NaN NaN NaN 148.51 1 143.45 142.95 143.95 -5.0595 0 0 0 0.23508 1 28763 28763 12.241 0.60036 1 + 14244 14449 9260 9263 14344 14344 0.03914973605265004 EVLQRWSE 8 Unmodified _EVLQRWSE_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.676513671875 2 523.766906 1045.51926 NaN NaN NaN NaN NaN NaN NaN 132.82 1 128.02 127.52 128.52 -4.799 0 0 0 0.21486 1 25562 25562 7.2892 2.0586 1 + 14245 17219 9261 9264 14345 14345 -0.0016801807919364364 EVLTAELAA 9 Unmodified _EVLTAELAA_ 0 0 0 tr|U7T299|U7T299_FUSNULargeribosomalsubunitproteinuL4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplDPE=3SV=1 tr|U7T299|U7T299_FUSNULargeribosomalsubunitproteinuL4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplDPE=3SV=1 tr|U7T299|U7T299_FUSNULargeribosomalsubunitproteinuL4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplDPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2389221191406 2 458.752933 915.491313 0.70422 0.00032306 -0.51073 -0.0002343 0.19349 8.8763E-05 458.752653431257 107.01 0.72032 102.87 102.6 103.32 -4.135 35 20 2 0 0 0 0.36689 1 20593 20593 34.102 0 1 2755700 14246 26353 9262 9265 14346 14346 0.030186589406980602 EVLTYIKF 8 Unmodified _EVLTYIKF_ 0 0 0 ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant;ABCC5|p.L1090Cfs*26|1|0.47|ENSG00000114770|chr3:183947469-183947469|A/-|frameshift_variant;ABCC5|p.L1090Vfs*62|2|0.19|ENSG00000114770|chr3:183947469-183947470|AA/-|frameshift_variant;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5 ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.18634033203125 3 338.195304 1011.56408 NaN NaN NaN NaN NaN NaN NaN 67.597 1 64.488 63.988 64.988 -3.1086 0 0 0 0.21486 1 13112 13112 1.8442 0 1 14247 19 9263 9266 14347 14347 0.058764127341419226 EVLVCYVYV 9 Unmodified _EVLVCYVYV_ 0 0 0 ENST00000589472.5_1_13:33854604-33855228:+|nuORF ENST00000589472.5_1_13:33854604-33855228:+|nuORF ENST00000589472.5_1_13:33854604-33855228:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7787475585938 2 543.780636 1085.54672 NaN NaN NaN NaN NaN NaN NaN 160.14 1 154.91 154.41 155.41 -5.2299 0 0 0 0.23508 1 31089 31089 7.9102 0.62092 1 14248 11591 9264 9267 14348 14348 0.007367491368086121 EVLYFMYE 8 Unmodified _EVLYFMYE_ 0 0 0 REV__ENSG00000080298|ENST00000617270|RFX3 REV__ENSG00000080298|ENST00000617270|RFX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7886962890625 2 547.249169 1092.48378 0.174 9.5224E-05 1.0559 0.00057781 1.2299 0.00067304 547.2496597650955 97.2 0.68169 92.965 92.746 93.428 -4.2348 34 19 2 0 0 0 0.71273 1 18541 18541 12.532 1.7076 1 3055300 + 14249 14407 9265 9268 14349 14349 -0.05875816651200694 EVMAVVNASY 10 Unmodified _EVMAVVNASY_ 0 0 0 ENST00000337685.6_1_X:105412353-105412413:+|nuORF ENST00000337685.6_1_X:105412353-105412413:+|nuORF ENST00000337685.6_1_X:105412353-105412413:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2642822265625 2 541.762975 1081.5114 0.63615 0.00034464 0.067559 3.6601E-05 0.70371 0.00038124 541.7629569368081 45.663 0.44904 45.663 45.554 46.003 0 16 12 2 0 0 0 0.871 1 8622 8622 10.074 10.074 1 760120 14250 8818 9266 9269 14350 14350 -0.0260991339098382 EVMCCGRGY 9 Unmodified _EVMCCGRGY_ 0 0 0 ENSG00000105989|ENST00000265441|WNT2 ENSG00000105989|ENST00000265441|WNT2 ENSG00000105989|ENST00000265441|WNT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.7898254394531 2 509.201173 1016.38779 0.1961 9.9856E-05 -0.75249 -0.00038317 -0.55639 -0.00028331 509.20059551257623 121.83 0.55199 121.83 121.58 122.13 0 22 15 2 0 0 0 0.58066 1 23989 23989 2.6312 0 1 1907900 14251 2357 9267 9270 14351 14351 -0.11974611034600002 EVMEEQMEVEE 11 Unmodified _EVMEEQMEVEE_ 0 0 0 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.52288818359375 3 461.188109 1380.5425 -0.56409 -0.00026015 1.5369 0.0007088 0.97281 0.00044865 461.1888523783404 107.69 0.93774 103.37 103.07 104.01 -4.32 41 26 2 0 0 0 0.81822 1 21228 21228 1.2148 0.10508 1 1996600 14252 7221 9268 9271 14352 14352 -0.13255172929689252 EVMITWKEG 9 Unmodified _EVMITWKEG_ 0 0 0 ENST00000267843.8_1_15:49716639-49716687:+|nuORF ENST00000267843.8_1_15:49716639-49716687:+|nuORF ENST00000267843.8_1_15:49716639-49716687:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 364.8500671386719 3 364.85132 1091.53213 NaN NaN NaN NaN NaN NaN NaN 26.074 1 24.439 23.939 24.939 -1.6347 0 0 0 0.19704 1 4312 4312 0.87518 0.49559 1 14253 8385 9269 9272 14353 14353 -0.009973230113246245 EVMRCRHR 8 Unmodified _EVMRCRHR_ 0 0 0 REV__ENST00000504459.5_1_5:74009375-74016573:+|nuORF REV__ENST00000504459.5_1_5:74009375-74016573:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7738647460938 2 543.774019 1085.53349 NaN NaN NaN NaN NaN NaN NaN 167.89 1 162.95 162.45 163.45 -4.948 0 0 0 0.20618 1 33068 33068 20.454 3.5113 1 + 14254 14080 9270 9273 14354 14354 -0.00585967403549148 EVMSNEMHT 9 Unmodified _EVMSNEMHT_ 0 0 0 REV__ENST00000435913.1_1:143194333-143196710:-|nuORF REV__ENST00000435913.1_1:143194333-143196710:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2232360839844 3 359.81617 1076.42668 -0.24836 -8.9366E-05 2.8762 0.0010349 2.6279 0.00094554 360.15034850716563 34.411 0.13666 34.411 34.312 34.449 0 5 3 2 0 0 0 0.64023 1 6303 6303 0.0033805 0 1 166660 + 14255 21345 9271 9274 14355 14355 -0.1084760719922997 EVMWQLCAI 9 Unmodified _EVMWQLCAI_ 0 0 0 nc|ENSG00000069667|P35398-4|RORA;ENSG00000069667|ENST00000335670|RORA;nc|ENSG00000069667|P35398-3|RORA;nc|ENSG00000069667|P35398-1|RORA nc|ENSG00000069667|P35398-4|RORA nc|ENSG00000069667|P35398-4|RORA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.767822265625 2 546.764463 1091.51437 0.25224 0.00013791 -0.83386 -0.00045593 -0.58163 -0.00031801 546.7639400165134 65.299 1.5404 61.841 61.225 62.765 -3.4581 133 43 4 0 0 0 0.55979 1 12356 12356 15.847 2.8047 1 39296000 14256 1418 9272 9275 14356 14356 -0.027723615378135946 EVNDAFLHV 9 Unmodified _EVNDAFLHV_ 0 0 0 ENST00000507834.3_1_4:86167663-86168062:+|nuORF ENST00000507834.3_1_4:86167663-86168062:+|nuORF ENST00000507834.3_1_4:86167663-86168062:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2581787109375 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 163.78 1 163.78 163.28 164.28 0 0 0 0 0.23508 1 33045 33045 8.5933 1.304 1 14257 10705 9273 9276 14357 14357 -0.011194204534831442 EVNKQRESY 9 Unmodified _EVNKQRESY_ 0 0 0 ENSG00000155754|ENST00000439140|C2CD6;nc|ENSG00000155754|Q53TS8-1|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3200073242188 2 576.785827 1151.5571 NaN NaN NaN NaN NaN NaN NaN 87.1 1 83.371 82.871 83.871 -3.7289 0 0 0 0.23508 1 16662 16662 12.532 0 1 14258 5059 9274 9277 14358 14358 -0.012615518843858808 EVNTDIQAE 9 Unmodified _EVNTDIQAE_ 0 0 0 REV__nc|ENSG00000158636|Q7Z589-6|EMSY REV__nc|ENSG00000158636|Q7Z589-6|EMSY MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1019.470947265625 1 1018.46875 1017.46147 -0.31769 -0.00032356 0.068541 6.9807E-05 -0.24915 -0.00025375 1018.4687761858968 55.747 0.85594 52.864 52.423 53.279 -2.8837 49 24 3 0 0 0 0.48644 1 10730 10730 20.454 0 1 8047200 + 14259 17340 9275 9278 14359 14359 -0.04656324795280398 EVNVTDGWIPA 11 Unmodified _EVNVTDGWIPA_ 0 0 0 REV__ENSG00000140481|ENST00000398814|CCDC33 REV__ENSG00000140481|ENST00000398814|CCDC33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2999877929688 2 600.798403 1199.58225 1.0127 0.00060842 -0.77425 -0.00046517 0.23844 0.00014325 600.7978896200378 128.66 0.81995 124.03 123.58 124.4 -4.6292 73 22 4 0 0 0 0.53127 1 25327 25327 21.59 3.2171 1 21784000 + 14260 16578 9276 9279 14360 14360 -0.00955497081804424 EVNYEDYTF 9 Unmodified _EVNYEDYTF_ 0 0 0 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2589111328125 2 590.245669 1178.47678 NaN NaN NaN NaN NaN NaN NaN 60.714 1 57.49 56.99 57.99 -3.2237 0 0 0 0.23508 1 11357 11357 7.9102 0.3012 1 14261 26397 9277 9280 14361 14361 -0.10531457998104088 EVPALLPENL 10 Unmodified _EVPALLPENL_ 0 0 0 REV__ENST00000517348.1_1_7:39125465-39413102:+|nuORF REV__ENST00000517348.1_1_7:39125465-39413102:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7734985351562 2 547.808239 1093.60193 NaN NaN NaN NaN NaN NaN NaN 144.01 1 139.06 138.56 139.56 -4.9445 0 0 0 0.22588 1 27803 27803 8.1555 0.24537 1 + 14262 15055 9278 9281 14362 14362 0.058868789289590495 EVPATPNIEP 10 Unmodified _EVPATPNIEP_ 0 0 0 REV__nc|ENSG00000154645|Q9H9P2-2|CHODL REV__nc|ENSG00000154645|Q9H9P2-2|CHODL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2710571289062 2 533.774396 1065.53424 0.54172 0.00028916 -0.55185 -0.00029456 -0.010126 -5.4051E-06 533.7740680937853 101.94 1.7483 101.94 101.08 102.83 0 80 49 2 0 0 0 0.57141 1 20001 20001 31.268 6.2774 1 14486000 + 14263 17188 9279 9282 14363 14363 0.004094289981139809 EVPCSHALPQ 10 Unmodified _EVPCSHALPQ_ 0 0 0 nc|ENSG00000133317|Q96DT0-4|LGALS12;nc|ENSG00000133317|Q96DT0-2|LGALS12;ENSG00000133317|ENST00000394618|LGALS12;nc|ENSG00000133317|Q96DT0-6|LGALS12;nc|ENSG00000133317|Q96DT0-3|LGALS12;nc|ENSG00000133317|Q96DT0|LGALS12;nc|ENSG00000133317|Q96DT0-7|LGALS12 nc|ENSG00000133317|Q96DT0-4|LGALS12 nc|ENSG00000133317|Q96DT0-4|LGALS12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2844848632812 2 540.760766 1079.50698 0.17439 9.4303E-05 1.0055 0.00054372 1.1799 0.00063802 540.7621601406769 141.47 0.17961 136.48 136.38 136.56 -4.9877 5 4 2 0 0 0 0.87854 1 27258 27258 5.7319 0 1 1771600 14264 3796 9280 9283 14364 14364 -0.029593778138860216 EVPDRLSY 8 Unmodified _EVPDRLSY_ 0 0 0 nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F nc|ENSG00000102001|O60840-7|CACNA1F nc|ENSG00000102001|O60840-7|CACNA1F MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2539367675781 2 489.748182 977.481811 0.086756 4.2489E-05 -1.6836 -0.00082454 -1.5968 -0.00078205 489.7480994920546 59.752 0.73515 56.819 56.435 57.17 -2.9333 38 20 3 0 0 0 0.21714 1 11507 11507 43.858 3.901 1 2770200 14265 2103 9281 9284 14365 14365 -0.007831093448089632 EVPDRLSY 8 Unmodified _EVPDRLSY_ 0 0 0 nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F nc|ENSG00000102001|O60840-7|CACNA1F nc|ENSG00000102001|O60840-7|CACNA1F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26397705078125 2 489.748182 977.481811 0.1937 9.4865E-05 -0.32867 -0.00016096 -0.13497 -6.61E-05 489.7479907534647 60.023 0.60036 56.709 56.414 57.015 -3.3139 30 16 3 0 0 0 0.31581 1 11183 11183 52.268 3.9225 1 2725300 14266 2103 9281 9284 14366 14366 -0.007831093448089632 EVPDRLSY 8 Unmodified _EVPDRLSY_ 0 0 0 nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F nc|ENSG00000102001|O60840-7|CACNA1F nc|ENSG00000102001|O60840-7|CACNA1F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26397705078125 2 489.748182 977.481811 -0.10731 -5.2553E-05 0.088477 4.3331E-05 -0.018828 -9.2211E-06 489.7481566639616 59.99 0.59908 56.766 56.395 56.994 -3.2237 25 16 2 0 0 0 0.49931 1 11225 11225 36.127 3.8215 1 2942500 14267 2103 9281 9284 14367 14367 -0.007831093448089632 EVPEETSSST 10 Unmodified _EVPEETSSST_ 0 0 0 ENST00000319694.2_1_7:29603705-29603819:+|nuORF ENST00000319694.2_1_7:29603705-29603819:+|nuORF ENST00000319694.2_1_7:29603705-29603819:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.271728515625 2 533.232758 1064.45096 NaN NaN NaN NaN NaN NaN NaN 160.97 1 155.74 155.24 156.24 -5.2299 0 0 0 0.22588 1 31257 31257 10.074 0 1 14268 8703 9282 9285 14368 14368 -0.07868352240370768 EVPESAGLER 10 Unmodified _EVPESAGLER_ 0 0 0 REV__ENST00000539890.1_1_11:61124203-61124272:-|nuORF REV__ENST00000539890.1_1_11:61124203-61124272:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.1766662597656 3 362.852377 1085.5353 -0.62145 -0.00022549 0.37899 0.00013752 -0.24246 -8.7976E-05 362.8524803137486 16.642 0.35106 15.426 15.25 15.601 -1.2159 17 9 3 0 0 0 1.1339 1 2654 2654 0.26539 0.25943 1 448180 + 14269 22851 9283 9286 14369 14369 -0.004043566329301029 EVPESAGLER 10 Unmodified _EVPESAGLER_ 0 0 0 REV__ENST00000539890.1_1_11:61124203-61124272:-|nuORF REV__ENST00000539890.1_1_11:61124203-61124272:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 362.852377 1085.5353 -0.32274 -0.00011711 -0.11078 -4.0197E-05 -0.43352 -0.00015731 362.8524038352405 15.624 0.23546 15.624 15.473 15.708 0 0.099389 -0.00020741 NaN 0.26539 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1140400 + 14270 22851 9283 9286 -0.004043566329301029 EVPKEVVPEKK 11 Unmodified _EVPKEVVPEKK_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 641.43359375 2 641.374278 1280.734 NaN NaN NaN NaN NaN NaN NaN 167.25 1 162.36 161.86 162.86 -4.8916 0 0 0 0.23429 1 32870 32870 4.897 0.95262 1 14271 5053;26536 9284 9287 14370 14370 0.1048648394587417 EVPKIMHDP 9 Unmodified _EVPKIMHDP_ 0 0 0 REV__nc|ENSG00000147162|O15294-4|OGT REV__nc|ENSG00000147162|O15294-4|OGT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.273193359375 2 533.273509 1064.53247 NaN NaN NaN NaN NaN NaN NaN 32.345 1 30.319 29.819 30.819 -2.0264 0 0 0 0.23508 1 5609 5609 11.64 2.2572 1 + 14272 16923 9285 9288 14371 14371 0.00278096708530029 EVPLMGFPGP 10 Unmodified _EVPLMGFPGP_ 0 0 0 ENSG00000168140|ENST00000304735|VASN ENSG00000168140|ENST00000304735|VASN ENSG00000168140|ENST00000304735|VASN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.268310546875 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 116.72 1 112.14 111.64 112.64 -4.5815 0 0 0 2.8426 1 22398 22398 0.84494 0.46535 1 14273 5884 9286 9289 14372 14372 -0.0038040417739466648 EVPMMVPA 8 Unmodified _EVPMMVPA_ 0 0 0 ENSG00000214654|ENST00000689072|B3GALT9 ENSG00000214654|ENST00000689072|B3GALT9 ENSG00000214654|ENST00000689072|B3GALT9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.236328125 2 437.214075 872.413596 NaN NaN NaN NaN NaN NaN NaN 105.82 1 105.82 105.32 106.32 0 0 0 0 0.21452 1 20797 20797 13.508 3.434 1 14274 7729 9287 9290 14373 14373 -0.02771393520674792 EVPNSDIVCVE 11 Unmodified _EVPNSDIVCVE_ 0 0 0 ENSG00000166855|ENST00000300107|CLPX ENSG00000166855|ENST00000300107|CLPX ENSG00000166855|ENST00000300107|CLPX MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2810668945312 2 602.281728 1202.5489 NaN NaN NaN NaN NaN NaN NaN 168.49 1 163.7 163.2 164.2 -4.7898 0 0 0 0.23018 1 34061 34061 8.1555 1.4324 1 14275 5756 9288 9291 14374 14374 -0.0442686691601466 EVPPEEINYL 10 Unmodified _EVPPEEINYL_ 0 0 0 ENST00000435551.1_1_2:139065056-139065290:+|nuORF;nc|ENSG00000067064|Q13907|IDI1;IDI1|p.A243Sfs*5|1|0.35|ENSG00000067064|chr10:1041315-1041316|-/T|frameshift_variant;ENSG00000067064|ENST00000381344|IDI1 ENST00000435551.1_1_2:139065056-139065290:+|nuORF ENST00000435551.1_1_2:139065056-139065290:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3006591796875 2 601.800611 1201.58667 0.53846 0.00032404 0.38542 0.00023194 0.92387 0.00055599 601.8004867162261 161.06 0.45915 155.84 155.51 155.97 -5.2299 17 12 2 0 0 0 0.744 1 31255 31255 6.7232 0 1 1685000 14276 1383 9289 9292 14375 14375 -0.006060326589022225 EVPPPTVPMDY 11 Unmodified _EVPPPTVPMDY_ 0 0 0 nc|ENSG00000131473|P53396-3|ACLY;nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY nc|ENSG00000131473|P53396-3|ACLY nc|ENSG00000131473|P53396-3|ACLY MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7609252929688 2 622.797014 1243.57948 NaN NaN NaN NaN NaN NaN NaN 145.33 1 140.66 140.16 141.16 -4.6694 0 0 0 0.22943 1 28806 28806 8.7454 0.15213 1 14277 3679 9290 9293 14376 14376 -0.03257088530972396 EVPPVLNSMT 10 Unmodified _EVPPVLNSMT_ 0 0 0 REV__GNAS|p.A109T|1|0.32|ENSG00000087460|chr20:58903684-58903684|G/A|missense_variant REV__GNAS|p.A109T|1|0.32|ENSG00000087460|chr20:58903684-58903684|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7948608398438 2 543.778625 1085.5427 NaN NaN NaN NaN NaN NaN NaN 156.67 1 156.67 156.17 157.17 0 0 0 0 0.22588 1 31432 31432 10.074 2.1638 1 + 14278 23582 9291 9294 14377 14377 0.003346596431129001 EVPQENGMEDP 11 Unmodified _EVPQENGMEDP_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000462630.5_1_20:2637388-2638937:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF;ENST00000467196.5_3_20:2638092-2638937:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7607421875 2 622.758617 1243.50268 NaN NaN NaN NaN NaN NaN NaN 167.58 1 162.79 162.29 163.29 -4.7898 0 0 0 0.23379 1 33813 33813 5.2969 0 1 14279 2060 9292 9295 14378 14378 -0.10932931818115321 EVPQENGMEDP 11 Unmodified _EVPQENGMEDP_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000462630.5_1_20:2637388-2638937:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF;ENST00000467196.5_3_20:2638092-2638937:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7515258789062 2 622.758617 1243.50268 NaN NaN NaN NaN NaN NaN NaN 160.84 1 155.61 155.11 156.11 -5.2299 0 0 0 0.23379 1 31234 31234 5.2969 1.7004 1 14280 2060 9292 9295 14379 14379 -0.10932931818115321 EVPQLRDPQ 9 Unmodified _EVPQLRDPQ_ 0 0 0 REV__ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant REV__ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.26416015625 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 156 1 156 155.5 156.5 0 0 0 0 0.23508 1 31283 31283 7.2892 0 1 + 14281 17523 9293 9296 14380 14380 0.01931653466544958 EVPRCAMAPET 11 Unmodified _EVPRCAMAPET_ 0 0 0 ZDHHC8|p.T459Rfs*177|6|0.31|ENSG00000099904|chr22:20142999-20142999|C/-|frameshift_variant ZDHHC8|p.T459Rfs*177|6|0.31|ENSG00000099904|chr22:20142999-20142999|C/-|frameshift_variant ZDHHC8|p.T459Rfs*177|6|0.31|ENSG00000099904|chr22:20142999-20142999|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.289306640625 2 602.278466 1202.54238 NaN NaN NaN NaN NaN NaN NaN 173.13 1 168.35 167.85 168.85 -4.7898 0 0 0 0.23429 1 35301 35301 4.897 0.70751 1 14282 26595 9294 9297 14381 14381 -0.05079083348414315 EVPRPQMCS 9 Unmodified _EVPRPQMCS_ 0 0 0 ENSG00000204928|ENST00000377976|GRXCR2 ENSG00000204928|ENST00000377976|GRXCR2 ENSG00000204928|ENST00000377976|GRXCR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6776123046875 2 523.741519 1045.46849 NaN NaN NaN NaN NaN NaN NaN 164.37 1 159.31 158.81 159.81 -5.0648 0 0 0 0.23508 1 32048 32048 6.7232 0.51738 1 14283 7620 9295 9298 14382 14382 -0.052430067200475605 EVPRRLRPQ 9 Unmodified _EVPRRLRPQ_ 0 0 0 nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B nc|ENSG00000157870|Q8TBF2-2|PRXL2B nc|ENSG00000157870|Q8TBF2-2|PRXL2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3250122070312 2 575.843813 1149.67307 0.4415 0.00025423 1.2465 0.00071779 1.688 0.00097202 575.8428212077807 159.06 0.10991 153.79 153.69 153.8 -5.2712 4 2 2 0 0 0 0.74257 1 30867 30867 4.3292 0 1 669580 14284 12397 9296 9299 14383 14383 0.10422436476960684 EVPSPLPRSL 10 Unmodified _EVPSPLPRSL_ 0 0 0 ENSG00000139330|ENST00000266719|KERA ENSG00000139330|ENST00000266719|KERA ENSG00000139330|ENST00000266719|KERA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7728881835938 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 147.52 1 142.46 141.96 142.96 -5.0595 0 0 0 0.22588 1 28560 28560 12.241 2.8575 1 14285 4241 9297 9300 14384 14384 0.07009701023071102 EVPVLNVSYKL 11 Unmodified _EVPVLNVSYKL_ 0 0 0 ENST00000444025.1_1_7:23602199-23602811:-|nuORF ENST00000444025.1_1_7:23602199-23602811:-|nuORF ENST00000444025.1_1_7:23602199-23602811:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7505493164062 2 630.863546 1259.71254 NaN NaN NaN NaN NaN NaN NaN 169.9 1 169.9 169.4 170.4 0 0 0 0 0.22683 1 34898 34898 10.8 0.64894 1 14286 9919 9298 9301 14385 14385 0.09307098917201984 EVPVWFNI 8 Unmodified _EVPVWFNI_ 0 0 0 REV__ENSG00000140678|ENST00000268296|ITGAX REV__ENSG00000140678|ENST00000268296|ITGAX MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 502.36236572265625 2 502.26601 1002.51747 NaN NaN NaN NaN NaN NaN NaN 163.88 1 158.82 158.32 159.32 -5.0648 0 0 0 0.21452 1 31919 31919 13.508 0 1 + 14287 16590 9299 9302 14386 14386 0.016309729028535003 EVPYGDPRY 9 Unmodified _EVPYGDPRY_ 0 0 0 LRRC66|p.D663Y|1|0.51|ENSG00000188993|chr4:51995035-51995035|C/A|missense_variant LRRC66|p.D663Y|1|0.51|ENSG00000188993|chr4:51995035-51995035|C/A|missense_variant LRRC66|p.D663Y|1|0.51|ENSG00000188993|chr4:51995035-51995035|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.76953125 2 548.258914 1094.50327 0.18368 0.0001007 0.49776 0.0002729 0.68144 0.0003736 548.2590727150257 155.29 0.68523 150.01 149.5 150.18 -5.2854 24 18 2 0 0 0 0.76271 1 30025 30025 14.838 4.0143 1 2295500 14288 12089 9300 9303 14387 14387 -0.04019724316094653 EVQEEEEEPQ 10 Unmodified _EVQEEEEEPQ_ 0 0 0 nc|ENSG00000099866|Q13477-2|MADCAM1;nc|ENSG00000099866|Q13477-3|MADCAM1;ENSG00000099866|ENST00000215637|MADCAM1;nc|ENSG00000099866|Q13477-4|MADCAM1 nc|ENSG00000099866|Q13477-2|MADCAM1 nc|ENSG00000099866|Q13477-2|MADCAM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7665405273438 2 623.259504 1244.50446 0.41831 0.00026071 4.4705 0.0027863 4.8888 0.003047 623.7638028840079 134.94 0.13843 130.12 130.04 130.18 -4.8175 5 3 2 0 0 0 0.91149 1 25986 25986 3.5965 1.2938 1 957480 14289 1907 9301 9304 14388 14388 -0.10801599528508632 EVQEWRLR 8 Unmodified _EVQEWRLR_ 0 0 0 REV__GRID2IP|p.L1003Cfs*46|1|0.47|ENSG00000215045|chr7:6503063-6503063|A/-|frameshift_variant REV__GRID2IP|p.L1003Cfs*46|1|0.47|ENSG00000215045|chr7:6503063-6503063|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 373.12750244140625 3 372.536724 1114.58834 -0.52657 -0.00019617 -0.0038539 -1.4357E-06 -0.53042 -0.0001976 372.5366516708896 60.551 0.3179 57.327 57.208 57.526 -3.2237 10 8 2 0 0 0 1.0267 1 11341 11341 0 0 1 203870 + 14290 23590 9302 9305 14389 14389 0.03563065940352317 EVQKAVAE 8 Unmodified _EVQKAVAE_ 0 0 0 nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2 nc|ENSG00000078699|O43439-2|CBFA2T2 nc|ENSG00000078699|O43439-2|CBFA2T2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2167663574219 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 60.51 1 60.51 60.01 61.01 0 0 0 0 0.21486 1 11601 11601 11.64 0.81637 1 14291 1585 9303 9306 14390 14390 0.019015056264720442 EVQKRRKK 8 Unmodified _EVQKRRKK_ 0 0 0 tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1 tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1 tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5605163574219 3 357.896363 1070.66726 NaN NaN NaN NaN NaN NaN NaN 88.641 1 84.891 84.391 85.391 -3.7501 0 0 0 0.21486 1 16971 16971 6.2058 0.47393 1 14292 26164 9304 9307 14391 14391 0.13475337965314793 EVQPLKKD 8 Unmodified _EVQPLKKD_ 0 0 0 REV__ENSG00000039123|ENST00000230640|MTREX REV__ENSG00000039123|ENST00000230640|MTREX MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.740234375 2 478.7742 955.533846 0.15653 7.4945E-05 -0.15892 -7.6084E-05 -0.0023809 -1.1399E-06 478.7741830547474 155.57 0.78217 150.79 150.41 151.19 -4.7791 38 21 3 0 0 0 0.91917 1 30864 30864 20.454 2.3186 1 2562900 + 14293 14043 9305 9308 14392 14392 0.054300540689382615 EVQQEVVV 8 Unmodified _EVQQEVVV_ 0 0 0 ACSBG1|p.P314L|1|0.5|ENSG00000103740|chr15:78182099-78182099|G/A|missense_variant;ENSG00000103740|ENST00000258873|ACSBG1 ACSBG1|p.P314L|1|0.5|ENSG00000103740|chr15:78182099-78182099|G/A|missense_variant ACSBG1|p.P314L|1|0.5|ENSG00000103740|chr15:78182099-78182099|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2502746582031 2 465.250557 928.486562 -0.031476 -1.4644E-05 -0.12596 -5.8605E-05 -0.15744 -7.3249E-05 465.2503688211382 115.64 1.3797 111.17 110.64 112.02 -4.4726 64 39 3 0 0 0 0.62642 1 22731 22731 20.454 4.6064 1 3965800 14294 37 9306 9309 14393 14393 0.019457747979686246 EVQQIKFATKR 11 Unmodified _EVQQIKFATKR_ 0 0 0 REV__ENSG00000206530|ENST00000393845|CFAP44 REV__ENSG00000206530|ENST00000393845|CFAP44 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 674.3909912109375 2 674.390793 1346.76703 NaN NaN NaN NaN NaN NaN NaN 174.9 1 170.01 169.51 170.51 -4.8916 0 0 0 0.23519 1 34838 34838 4.1895 0.24511 1 + 14295 19622 9307 9310 14394 14394 0.10752110788598657 EVQRRCRQ 8 Unmodified _EVQRRCRQ_ 0 0 0 MGRN1|p.H78Pfs*102|1|0.27|ENSG00000102858|chr16:4651981-4651982|-/C|frameshift_variant MGRN1|p.H78Pfs*102|1|0.27|ENSG00000102858|chr16:4651981-4651982|-/C|frameshift_variant MGRN1|p.H78Pfs*102|1|0.27|ENSG00000102858|chr16:4651981-4651982|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 538.1964721679688 2 537.782899 1073.55124 1.3176 0.00070861 0.95773 0.00051505 2.2754 0.0012237 537.7835200282603 25.942 1.1648 24.294 23.896 25.06 -1.6482 95 33 5 0 0 0 1.0254 1 4651 4651 2.3027 1.7012 1 52504000 14296 12142 9308 9311 14395 14395 0.01741071122955873 EVQTIEVY 8 Unmodified _EVQTIEVY_ 0 0 0 nc|ENSG00000131652|Q86W42-3|THOC6;nc|ENSG00000131652|Q86W42-2|THOC6;ENSG00000131652|ENST00000326266|THOC6 nc|ENSG00000131652|Q86W42-3|THOC6 nc|ENSG00000131652|Q86W42-3|THOC6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2643737792969 2 490.75039 979.486227 0.1694 8.3135E-05 1.423 0.00069834 1.5924 0.00078148 490.75024069697594 60.759 0.97238 57.445 57.05 58.023 -3.3139 58 27 3 0 0 0 0.50387 1 11326 11326 34.102 0 1 1594600 14297 3686 9309 9312 14396 14396 -0.004336449219067617 EVQTSEDSFSN 11 Unmodified _EVQTSEDSFSN_ 0 0 0 REV__nc|ENSG00000084693|Q8NDL9-3|AGBL5 REV__nc|ENSG00000084693|Q8NDL9-3|AGBL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7598266601562 2 621.759672 1241.50479 0.34163 0.00021241 -0.42274 -0.00026284 -0.081111 -5.0431E-05 621.7599266283966 129.05 0.80003 124.23 123.84 124.64 -4.817 51 22 4 0 0 0 0.7876 1 24726 24726 5.2969 0.54088 1 5990800 + 14298 12978 9310 9313 14397 14397 -0.10630179808663343 EVQWLQQR 8 Unmodified _EVQWLQQR_ 0 0 0 PPL|p.R1422W|1|0.15|ENSG00000118898|chr16:4884391-4884391|G/A|missense_variant PPL|p.R1422W|1|0.15|ENSG00000118898|chr16:4884391-4884391|G/A|missense_variant PPL|p.R1422W|1|0.15|ENSG00000118898|chr16:4884391-4884391|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.787109375 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 170.33 1 165.42 164.92 165.92 -4.9149 0 0 0 0.21486 1 33675 33675 10.074 0.6908 1 14299 12819 9311 9314 14398 14398 0.02243377049035189 EVREKQLRERM 11 Unmodified _EVREKQLRERM_ 0 0 0 nc|ENSG00000163820|Q9BQS8-3|FYCO1;nc|ENSG00000163820|Q9BQS8-2|FYCO1;FYCO1|p.K751Rfs*12|1|0.42|ENSG00000163820|chr3:45967082-45967083|-/TCTC|frameshift_variant;ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1 nc|ENSG00000163820|Q9BQS8-3|FYCO1 nc|ENSG00000163820|Q9BQS8-3|FYCO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 491.75079345703125 3 491.93667 1472.78818 0.047961 2.3594E-05 0.093136 4.5817E-05 0.1411 6.9411E-05 492.27042891710937 85.54 0.14342 81.875 81.783 81.927 -3.6641 5 3 2 0 0 0 0.6614 1 16728 16728 0.094841 0 1 367530 14300 12420 9312 9315 14399 14399 0.07069752825805153 EVRESFFGGP 10 Unmodified _EVRESFFGGP_ 0 0 0 ENST00000470356.3_1_19:3572943-3574226:+|nuORF ENST00000470356.3_1_19:3572943-3574226:+|nuORF ENST00000470356.3_1_19:3572943-3574226:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2069091796875 3 375.517218 1123.52982 -0.24372 -9.1521E-05 -0.088286 -3.3153E-05 -0.33201 -0.00012467 375.5171831927867 29.262 0.41594 27.265 27.043 27.459 -1.9962 21 11 2 0 0 0 0.91149 1 4945 4945 1.9064 0.9441 1 756270 14301 10197 9313 9316 14400 14400 -0.027000354247547875 EVRHSSTEV 9 Unmodified _EVRHSSTEV_ 0 0 0 REV__ENSG00000256806|ENST00000542475|C17orf100 REV__ENSG00000256806|ENST00000542475|C17orf100 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2706909179688 2 522.259445 1042.50434 NaN NaN NaN NaN NaN NaN NaN 65.387 1 62.104 61.604 62.604 -3.2832 0 0 0 0.23508 1 12292 12292 10.824 0 1 + 14302 19867 9314 9317 14401 14401 -0.015215099471788562 EVRKELEY 8 Unmodified _EVRKELEY_ 0 0 0 REV__ENSG00000108819|ENST00000612501|PPP1R9B REV__ENSG00000108819|ENST00000612501|PPP1R9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2835693359375 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 109.83 1 109.83 109.33 110.33 0 0 0 0 0.20761 1 21598 21598 19.257 0 1 + 14303 15139 9315 9318 14402 14402 0.020531352350417365 EVRKKHLPPR 10 Unmodified _EVRKKHLPPR_ 0 0 0 REV__nc|ENSG00000118007|Q8WVM7-2|STAG1 REV__nc|ENSG00000118007|Q8WVM7-2|STAG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7551879882812 2 630.388388 1258.76222 0.7406 0.00046686 1.671 0.0010534 2.4116 0.0015202 630.3891435816379 104.6 0.58477 100.38 100.1 100.68 -4.2183 41 16 3 0 0 0 0.91149 1 20545 20545 1.1933 0 1 2884500 + 14304 15535 9316 9319 14403 14403 0.14319271436511372 EVRLQRLERER 11 Unmodified _EVRLQRLERER_ 0 0 0 ENST00000566987.5_1_16:71893923-71901814:-|nuORF;nc|ENSG00000102984|O75541-2|ZNF821;ENSG00000102984|ENST00000425432|ZNF821 ENST00000566987.5_1_16:71893923-71901814:-|nuORF ENST00000566987.5_1_16:71893923-71901814:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3875732421875 2 742.42623 1482.83791 NaN NaN NaN NaN NaN NaN NaN 172.98 1 172.98 172.48 173.48 0 0 0 0 0.23698 1 35740 35740 2.7352 0 1 14305 2157 9317 9320 14404 14404 0.11580203826088109 EVRRIENY 8 Unmodified _EVRRIENY_ 0 0 0 ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27 ENST00000533415.5_1_17:45198303-45266605:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015686035156 3 360.192845 1077.55671 NaN NaN NaN NaN NaN NaN NaN 82.867 1 79.259 78.759 79.759 -3.6079 0 0 0 0.21486 1 16195 16195 3.5965 0.8613 1 14306 979 9318 9321 14405 14405 0.02103073186435722 EVRRRLEEE 9 Unmodified _EVRRRLEEE_ 0 0 0 AXIN1|p.A710V|1|0.44|ENSG00000103126|chr16:293545-293545|G/A|missense_variant AXIN1|p.A710V|1|0.44|ENSG00000103126|chr16:293545-293545|G/A|missense_variant AXIN1|p.A710V|1|0.44|ENSG00000103126|chr16:293545-293545|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 406.22149658203125 3 405.886192 1214.63675 0.16409 6.66E-05 -0.027884 -1.1318E-05 0.1362 5.5282E-05 405.88615711897364 40.538 0.74812 40.538 40.101 40.849 0 33 20 2 0 0 0 0.78323 1 7560 7560 2.4985 0 1 3175000 14307 285 9319 9322 14406 14406 0.03801514789643079 EVRRRLEEE 9 Unmodified _EVRRRLEEE_ 0 0 0 AXIN1|p.A710V|1|0.44|ENSG00000103126|chr16:293545-293545|G/A|missense_variant AXIN1|p.A710V|1|0.44|ENSG00000103126|chr16:293545-293545|G/A|missense_variant AXIN1|p.A710V|1|0.44|ENSG00000103126|chr16:293545-293545|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 405.886192 1214.63675 -0.064404 -2.6141E-05 0.16368 6.6437E-05 0.099279 4.0296E-05 405.8862375009166 43.302 0.68636 40.536 40.18 40.867 -2.7661 -0.055552 -8.1503E-05 NaN 2.4985 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2728100 14308 285 9319 9322 0.03801514789643079 EVRVRGPG 8 Unmodified _EVRVRGPG_ 0 0 0 ENST00000437868.5_1_19:54677211-54677685:-|nuORF ENST00000437868.5_1_19:54677211-54677685:-|nuORF ENST00000437868.5_1_19:54677211-54677685:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 435.2679138183594 2 435.251226 868.487899 0.33725 0.00014679 -0.58679 -0.0002554 -0.24954 -0.00010861 435.25089755639374 114.78 1.5077 110.47 109.64 111.15 -4.3136 62 42 2 0 0 0 0.88646 1 22027 22027 0.12286 0 1 934880 14309 9856 9320 9323 14407 14407 0.04839453677391248 EVRVRGPG 8 Unmodified _EVRVRGPG_ 0 0 0 ENST00000437868.5_1_19:54677211-54677685:-|nuORF ENST00000437868.5_1_19:54677211-54677685:-|nuORF ENST00000437868.5_1_19:54677211-54677685:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 435.2679138183594 2 435.251226 868.487899 0.36774 0.00016006 -0.38199 -0.00016626 -0.014251 -6.2029E-06 435.2509293173415 113.63 1.8499 109.36 108.36 110.21 -4.2725 70 52 2 0 0 0 0.88646 1 22027 22027 0.12286 0 1 1401100 14310 9856 9320 9323 14408 14408 0.04839453677391248 EVRYRKHRKEY 11 Unmodified _EVRYRKHRKEY_ 0 0 0 REV__tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1 REV__tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2671508789062 3 521.954941 1562.84299 -0.41776 -0.00021805 -2.9561 -0.0015429 -3.3738 -0.001761 522.2872881097671 91.436 0.19708 87.341 87.161 87.358 -4.0946 7 5 2 0 0 0 0.89084 1 17416 17416 0.026206 0 1 1386900 + 14311 25209 9321 9324 14409 14409 0.08408507688750433 EVRYVNPFA 9 Unmodified _EVRYVNPFA_ 0 0 0 ENST00000374721.7_1_10:35415991-35426711:+|nuORF;ENST00000496626.5_1_10:35415991-35437300:+|nuORF;ENST00000489388.5_1_10:35415991-35467839:+|nuORF ENST00000374721.7_1_10:35415991-35426711:+|nuORF ENST00000374721.7_1_10:35415991-35426711:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7840576171875 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 166.65 1 166.65 166.15 167.15 0 0 0 0 0.19638 1 33969 33969 0.40827 0 1 14312 9225 9322 9325 14410 14410 0.012608588175226032 EVSAAREEVP 10 Unmodified _EVSAAREEVP_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1 ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1 ENSG00000147416|ENST00000276390|ATP6V1B2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7753295898438 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 167.85 1 163.06 162.56 163.56 -4.7898 0 0 0 0.22552 1 33892 33892 18.146 0 1 14313 4700;2903 9323 9326 14411 14411 -0.004043566329528403 EVSAQSWL 8 Unmodified _EVSAQSWL_ 0 0 0 ENST00000589346.1_1_18:13666542-13671889:-|nuORF ENST00000589346.1_1_18:13666542-13671889:-|nuORF ENST00000589346.1_1_18:13666542-13671889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23492431640625 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 44.677 1 41.93 41.43 42.43 -2.7475 0 0 0 0.17894 1 8091 8091 32.117 0 1 14314 11588 9324 9327 14412 14412 -0.01778780890560938 EVSDSCSHDFD 11 Unmodified _EVSDSCSHDFD_ 0 0 0 REV__ENSG00000099949|ENST00000646124|LZTR1 REV__ENSG00000099949|ENST00000646124|LZTR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.0731506347656 4 310.866026 1239.435 0.19587 6.0889E-05 0.14251 4.4303E-05 0.33838 0.00010519 311.1164845485419 179.31 1.3466 174.44 173.77 175.12 -4.868 51 38 2 0 0 0 0.96227 1 35806 35806 0.094841 0.094841 1 6273600 + 14315 14649 9325 9328 14413 14413 -0.1751438174892428 EVSGFPEGP 9 Unmodified _EVSGFPEGP_ 0 0 0 REV__nc|ENSG00000011478|Q9NXS2-3|QPCTL REV__nc|ENSG00000011478|Q9NXS2-3|QPCTL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2384338378906 2 459.713808 917.413062 -0.022926 -1.0539E-05 1.9307 0.00088756 1.9078 0.00087702 459.71438170951114 63.031 0.64549 60.033 59.739 60.384 -2.9975 25 18 2 0 0 0 0.49001 1 12201 12201 28.487 3.813 1 947070 + 14316 13939 9326 9329 14414 14414 -0.048947736445143164 EVSGFPEGP 9 Unmodified _EVSGFPEGP_ 0 0 0 REV__nc|ENSG00000011478|Q9NXS2-3|QPCTL REV__nc|ENSG00000011478|Q9NXS2-3|QPCTL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.713808 917.413062 0.24539 0.00011281 2.0371 0.00093647 2.2825 0.0010493 459.7144134147035 63.252 0.41793 59.995 59.811 60.229 -3.2567 -0.018975 5.5985E-05 NaN 28.487 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 423840 + 14317 13939 9326 9329 -0.048947736445143164 EVSGKKGG 8 Unmodified _EVSGKKGG_ 0 0 0 REV__ENST00000485075.1_1_15:78562865-78566840:+|nuORF REV__ENST00000485075.1_1_15:78562865-78566840:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2193298339844 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 110.15 1 105.97 105.47 106.47 -4.1826 0 0 0 0.23749 1 21198 21198 0.12286 0 1 + 14318 16573 9327 9330 14415 14415 0.01812967283535727 EVSGKTVLRY 10 Unmodified _EVSGKTVLRY_ 0 0 0 REV__CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant REV__CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3248901367188 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 141.46 1 136.81 136.31 137.31 -4.6493 0 0 0 0.22588 1 27943 27943 8.7454 0.15213 1 + 14319 13397 9328 9331 14416 14416 0.06533086051786086 EVSKKCWHQG 10 Unmodified _EVSKKCWHQG_ 0 0 0 ENST00000431002.6_1_11:62438460-62439219:-|nuORF ENST00000431002.6_1_11:62438460-62439219:-|nuORF ENST00000431002.6_1_11:62438460-62439219:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.294189453125 2 601.292765 1200.57098 -0.78367 -0.00047121 0.23212 0.00013957 -0.55155 -0.00033164 601.2928756080624 20.478 0.45655 18.819 18.581 19.038 -1.6587 34 12 4 0 0 0 0.71097 1 3158 3158 10.074 0 1 2389600 14320 9780 9329 9332 14417 14417 -0.021285976569515697 EVSMWDME 8 Unmodified _EVSMWDME_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4;ENST00000512677.1_1_3:130399450-130405071:-|nuORF;ENST00000512362.5_1_3:130399450-130405229:-|nuORF ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 513.29443359375 2 513.698986 1025.38342 0.24006 0.00012332 2.2068 0.0011336 2.4468 0.0012569 514.2006204123836 99.806 0.65314 95.817 95.557 96.21 -3.9895 35 18 3 0 0 0 0.88445 1 19241 19241 0.12286 0.093582 1 3569700 14321 7268 9330 9333 14418 14418 -0.12825796976517267 EVSRHLEFY 9 Unmodified _EVSRHLEFY_ 0 0 0 ENSG00000241945|ENST00000291576|PWP2 ENSG00000241945|ENST00000291576|PWP2 ENSG00000241945|ENST00000291576|PWP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2767944335938 2 590.293288 1178.57202 NaN NaN NaN NaN NaN NaN NaN 159.97 1 159.97 159.47 160.47 0 0 0 0 0.23508 1 32121 32121 7.9102 2.1783 1 14322 7861 9331 9334 14419 14419 -0.010120600163645577 EVSRKKPL 8 Unmodified _EVSRKKPL_ 0 0 0 REV__nc|ENSG00000144596|Q9C0E4-2|GRIP2 REV__nc|ENSG00000144596|Q9C0E4-2|GRIP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7342834472656 2 478.798009 955.581465 NaN NaN NaN NaN NaN NaN NaN 76.808 1 73.393 72.893 73.893 -3.4151 0 0 0 0.21452 1 14990 14990 13.508 3.3245 1 + 14323 16790 9332 9335 14420 14420 0.10189753059808027 EVSSGIRY 8 Unmodified _EVSSGIRY_ 0 0 0 REV__CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;REV__ENSG00000084774|ENST00000264705|CAD REV__ENSG00000084774|ENST00000264705|CAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 455.490966796875 2 455.735074 909.455596 -0.062986 -2.8705E-05 0.25615 0.00011674 0.19317 8.8033E-05 455.735140627987 46.207 1.1726 43.342 42.553 43.726 -2.8653 66 33 4 0 0 0 0.89552 1 8349 8349 19.439 0 1 11193000 + 14324 13242;14470 9333 9336 14421 14421 -0.0027537851627812415 EVSSGIRY 8 Unmodified _EVSSGIRY_ 0 0 0 REV__CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;REV__ENSG00000084774|ENST00000264705|CAD REV__ENSG00000084774|ENST00000264705|CAD MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 455.735074 909.455596 0.51007 0.00023246 -0.16879 -7.6923E-05 0.34128 0.00015553 455.73495084807007 43.34 0.79332 43.34 42.883 43.677 0 -0.012473 -0.00037603 NaN 19.439 50 22 3 NaN NaN NaN NaN 0 NaN NaN 0 6163100 + 14325 13242;14470 9333 9336 -0.0027537851627812415 EVSSGIRY 8 Unmodified _EVSSGIRY_ 0 0 0 REV__CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;REV__ENSG00000084774|ENST00000264705|CAD REV__ENSG00000084774|ENST00000264705|CAD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 455.735074 909.455596 -0.12821 -5.8431E-05 0.42742 0.00019479 0.2992 0.00013636 455.7352115254504 46.179 0.79478 43.338 42.898 43.693 -2.8409 -0.014073 0.00016739 NaN 19.439 56 22 4 NaN NaN NaN NaN 0 NaN NaN 0 13885000 + 14326 13242;14470 9333 9336 -0.0027537851627812415 EVSSGIRY 8 Unmodified _EVSSGIRY_ 0 0 0 REV__CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;REV__ENSG00000084774|ENST00000264705|CAD REV__ENSG00000084774|ENST00000264705|CAD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 455.735074 909.455596 -0.12423 -5.6618E-05 0.40078 0.00018265 0.27654 0.00012603 455.73519878673324 46.255 1.2118 43.389 42.469 43.681 -2.8666 0.036679 0.00014311 NaN 19.439 66 34 3 NaN NaN NaN NaN 0 NaN NaN 0 11929000 + 14327 13242;14470 9333 9336 -0.0027537851627812415 EVTEFGNKY 9 Unmodified _EVTEFGNKY_ 0 0 0 ENST00000496594.5_1_9:130885151-130886781:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2 ENST00000496594.5_1_9:130885151-130886781:-|nuORF ENST00000496594.5_1_9:130885151-130886781:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77392578125 2 543.758746 1085.50294 0.44985 0.00024461 -2.2459 -0.0012212 -1.7961 -0.00097662 543.7575355580205 100.85 0.66226 96.856 96.55 97.212 -3.9895 27 18 2 0 0 0 0.48644 1 19345 19345 20.454 2.3073 1 1320800 14328 4737 9334 9337 14422 14422 -0.03639144035946629 EVTEMTSYK 9 Unmodified _EVTEMTSYK_ 0 0 0 REV__ENSG00000138646|ENST00000264350|HERC5 REV__ENSG00000138646|ENST00000264350|HERC5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7848510742188 2 544.25244 1086.49033 0.33784 0.00018387 0.67664 0.00036826 1.0145 0.00055213 544.253377397766 145.94 0.20822 145.94 145.84 146.04 0 6 5 2 0 0 0 0.59016 1 29163 29163 0.40827 0 1 1801500 + 14329 16471 9335 9338 14423 14423 -0.04945923490504356 EVTIPHKSPYL 11 Unmodified _EVTIPHKSPYL_ 0 0 0 REV__ENSG00000283528|ENST00000636941|TCAF2C REV__ENSG00000283528|ENST00000636941|TCAF2C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 642.2906494140625 2 642.353345 1282.69214 NaN NaN NaN NaN NaN NaN NaN 167.46 1 162.51 162.01 163.01 -4.948 0 0 0 0.1832 1 32941 32941 22.736 5.6234 1 + 14330 18157 9336 9339 14424 14424 0.062099282573854 EVTKKWFQMRM 11 Unmodified _EVTKKWFQMRM_ 0 0 0 REV__ENST00000518258.5_1_8:96047714-96052987:+|nuORF REV__ENST00000518258.5_1_8:96047714-96052987:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3786010742188 2 742.381057 1482.74756 NaN NaN NaN NaN NaN NaN NaN 129.78 1 124.95 124.45 125.45 -4.8355 0 0 0 0.23379 1 24916 24916 5.2969 2.0156 1 + 14331 17248 9337 9340 14425 14425 0.025496951818013258 EVTKLFDK 8 Unmodified _EVTKLFDK_ 0 0 0 REV__ENSG00000068394|ENST00000156109|GPKOW REV__ENSG00000068394|ENST00000156109|GPKOW MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27410888671875 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 144.39 1 139.32 138.82 139.82 -5.0671 0 0 0 0.21404 1 27856 27856 13.906 0 1 + 14332 14226 9338 9341 14426 14426 0.04846938211710494 EVTKLLSYL 9 Unmodified _EVTKLLSYL_ 0 0 0 ENSG00000149633|ENST00000279024|KIAA1755;KIAA1755|p.P752Lfs*11|1|0.15|ENSG00000149633|chr20:38223551-38223551|G/-|frameshift_variant ENSG00000149633|ENST00000279024|KIAA1755 ENSG00000149633|ENST00000279024|KIAA1755 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2869262695312 2 533.313158 1064.61176 0.099255 5.2934E-05 -0.46217 -0.00024648 -0.36292 -0.00019355 533.8167082704284 117.98 0.21764 117.98 117.9 118.11 0 8 5 3 0 0 0 0.85111 1 23226 23226 3.5965 0 1 1474500 14333 4804 9339 9342 14427 14427 0.08204066934331422 EVTPLDELK 9 Unmodified _EVTPLDELK_ 0 0 0 REV__ENSG00000107159|ENST00000378357|CA9 REV__ENSG00000107159|ENST00000378357|CA9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2568359375 2 522.284597 1042.55464 -0.089477 -4.6732E-05 -3.272 -0.0017089 -3.3614 -0.0017556 522.2827016858986 153.33 0.10419 148.56 148.48 148.58 -4.7684 4 2 2 0 0 0 0.81703 1 30462 30462 6.2058 0 1 660560 + 14334 15076 9340 9343 14428 14428 0.03506599657953302 EVTPQVTIEA 10 Unmodified _EVTPQVTIEA_ 0 0 0 REV__ENSG00000102290|ENST00000682573|PCDH11X REV__ENSG00000102290|ENST00000682573|PCDH11X MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.770751953125 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 166.77 1 161.98 161.48 162.48 -4.7898 0 0 0 0.22552 1 33546 33546 18.146 0 1 + 14335 14833 9341 9344 14429 14429 0.021096981696246075 EVTQPTQI 8 Unmodified _EVTQPTQI_ 0 0 0 ACVR2A|p.S127Qfs*23|1|0.48|ENSG00000121989|chr2:147899748-147899748|T/-|frameshift_variant ACVR2A|p.S127Qfs*23|1|0.48|ENSG00000121989|chr2:147899748-147899748|T/-|frameshift_variant ACVR2A|p.S127Qfs*23|1|0.48|ENSG00000121989|chr2:147899748-147899748|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24212646484375 2 458.242732 914.470912 0.064332 2.948E-05 0.095652 4.3832E-05 0.15998 7.3312E-05 458.2427144213807 96.209 1.3157 91.974 91.535 92.851 -4.2348 75 37 3 0 0 0 0.49114 1 18532 18532 28.487 3.813 1 5732800 14336 50 9342 9345 14430 14430 0.010254882809135779 EVTRWIFM 8 Unmodified _EVTRWIFM_ 0 0 0 REV__IGF2R|p.V1208M|1|0.26|ENSG00000197081|chr6:160062571-160062571|G/A|missense_variant REV__IGF2R|p.V1208M|1|0.26|ENSG00000197081|chr6:160062571-160062571|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2605590820312 2 541.278595 1080.54264 0.31171 0.00016872 0.89149 0.00048254 1.2032 0.00065126 541.280330316112 153.87 0.1066 153.87 153.79 153.9 0 4 2 2 0 0 0 0.73936 1 30836 30836 8.5933 0.68312 1 833370 + 14337 23650 9343 9346 14431 14431 0.0055870443377443735 EVTSFSNRF 9 Unmodified _EVTSFSNRF_ 0 0 0 nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1;nc|ENSG00000160688|Q8NFF5-4|FLAD1;nc|ENSG00000160688|Q8NFF5-5|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7695922851562 2 543.764363 1085.51417 NaN NaN NaN NaN NaN NaN NaN 134.97 1 134.97 134.47 135.47 0 0 0 0 0.23508 1 26725 26725 11.64 3.7301 1 14338 5260 9344 9347 14432 14432 -0.025163219418118388 EVTVPRVY 8 Unmodified _EVTVPRVY_ 0 0 0 nc|ENSG00000100503|Q8N4C6-5|NIN nc|ENSG00000100503|Q8N4C6-5|NIN nc|ENSG00000100503|Q8N4C6-5|NIN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76898193359375 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 87.726 1 83.933 83.433 84.433 -3.7926 0 0 0 0.20462 1 17158 17158 21.747 0 1 14339 12254 9345 9348 14433 14433 0.040980714145121055 EVTWNSPRY 9 Unmodified _EVTWNSPRY_ 0 0 0 ENST00000496613.5_1_7:140305582-140340342:-|nuORF ENST00000496613.5_1_7:140305582-140340342:-|nuORF ENST00000496613.5_1_7:140305582-140340342:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3275146484375 2 576.277638 1150.54072 NaN NaN NaN NaN NaN NaN NaN 141.02 1 136.15 135.65 136.65 -4.8678 0 0 0 0.23508 1 27205 27205 7.9102 0.62092 1 14340 10582 9346 9349 14434 14434 -0.02852633050474651 EVVESEKMFY 10 Unmodified _EVVESEKMFY_ 0 0 0 tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7788696289062 2 630.794472 1259.57439 NaN NaN NaN NaN NaN NaN NaN 122.03 1 117.35 116.85 117.85 -4.6873 0 0 0 0.22588 1 23429 23429 6.7232 0.51738 1 14341 26280 9347 9350 14435 14435 -0.04501392393581227 EVVHSNNM 8 Unmodified _EVVHSNNM_ 0 0 0 ENST00000271469.7_2_1:162569461-162569569:+|nuORF ENST00000271469.7_2_1:162569461-162569569:+|nuORF ENST00000271469.7_2_1:162569461-162569569:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2411804199219 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 109.06 1 104.61 104.11 105.11 -4.4518 0 0 0 0.23182 1 20931 20931 0.62683 0.50396 1 14342 8404 9348 9351 14436 14436 -0.059801954278327685 EVVKITHC 8 Unmodified _EVVKITHC_ 0 0 0 nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1 nc|ENSG00000101596|A6NHR9-2|SMCHD1 nc|ENSG00000101596|A6NHR9-2|SMCHD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17034912109375 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 93.125 1 93.125 92.625 93.625 0 0 0 0 0.21486 1 18215 18215 1.6526 0.17072 1 14343 2076 9349 9352 14437 14437 0.01814442508339198 EVVLWDPA 8 Unmodified _EVVLWDPA_ 0 0 0 REV__ENST00000336798.11_2_1:31345605-31346058:-|nuORF REV__ENST00000336798.11_2_1:31345605-31346058:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 136.23 1 136.23 135.73 136.73 0 0 0 0 0.23837 1 26991 26991 0.12286 0.11459 1 + 14344 20668 9350 9353 14438 14438 0.00354693631857117 EVVLWDPA 8 Unmodified _EVVLWDPA_ 0 0 0 REV__ENST00000336798.11_2_1:31345605-31346058:-|nuORF REV__ENST00000336798.11_2_1:31345605-31346058:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 153.35 1 153.35 152.85 153.85 0 0 0 0 0.21486 1 30723 30723 1.6526 0.17072 1 + 14345 20668 9350 9353 14439 14439 0.00354693631857117 EVVMEDSV 8 Unmodified _EVVMEDSV_ 0 0 0 REV__nc|ENSG00000004455|P54819-4|AK2 REV__nc|ENSG00000004455|P54819-4|AK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.74993896484375 2 454.207501 906.400449 NaN NaN NaN NaN NaN NaN NaN 148.23 1 143.52 143.02 144.02 -4.7095 0 0 0 0.21486 1 29432 29432 12.532 0 1 + 14346 13835 9351 9354 14440 14440 -0.05649553099055993 EVVNICYLE 9 Unmodified _EVVNICYLE_ 0 0 0 ENST00000239878.8_1_13:38934901-38934979:+|nuORF ENST00000239878.8_1_13:38934901-38934979:+|nuORF ENST00000239878.8_1_13:38934901-38934979:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2640991210938 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 115.23 1 110.75 110.25 111.25 -4.4726 0 0 0 0.23508 1 22711 22711 8.7454 0 1 14347 8178 9352 9355 14441 14441 -0.020890292482363293 EVVPLTEE 8 Unmodified _EVVPLTEE_ 0 0 0 ENSG00000150656|ENST00000358821|CNDP1 ENSG00000150656|ENST00000358821|CNDP1 ENSG00000150656|ENST00000358821|CNDP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2275695800781 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 70.824 1 67.575 67.075 68.075 -3.2492 0 0 0 0.21486 1 13787 13787 9.3474 0 1 14348 4831 9353 9356 14442 14442 -0.0009733381323258072 EVVPPSLST 9 Unmodified _EVVPPSLST_ 0 0 0 REV__ENSG00000100596|ENST00000216484|SPTLC2 REV__ENSG00000100596|ENST00000216484|SPTLC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1705627441406 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 137.97 1 137.97 137.47 138.47 0 0 0 0 0.23508 1 27381 27381 2.4985 0.84587 1 + 14349 14723 9354 9357 14443 14443 0.024666589407161155 EVVQQVVL 8 Unmodified _EVVQQVVL_ 0 0 0 ENSG00000047621|ENST00000261250|C12orf4 ENSG00000047621|ENST00000261250|C12orf4 ENSG00000047621|ENST00000261250|C12orf4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23919677734375 2 457.271293 912.528032 0.326 0.00014907 0.014836 6.7841E-06 0.34084 0.00015586 457.271216653942 110.19 0.62199 110.19 109.88 110.51 0 25 17 2 0 0 0 0.68128 1 21653 21653 16.942 1.0951 1 1570700 14350 1219 9355 9358 14444 14444 0.06826955557301062 EVVQQVVL 8 Unmodified _EVVQQVVL_ 0 0 0 ENSG00000047621|ENST00000261250|C12orf4 ENSG00000047621|ENST00000261250|C12orf4 ENSG00000047621|ENST00000261250|C12orf4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2379150390625 2 457.271293 912.528032 -0.14999 -6.8586E-05 0.48186 0.00022034 0.33187 0.00015176 457.27142965154343 114.57 0.49578 110.1 109.86 110.36 -4.4726 28 13 3 0 0 0 0.71273 1 22569 22569 12.532 0 1 2265400 14351 1219 9355 9358 14445 14445 0.06826955557301062 EVVQQVVL 8 Unmodified _EVVQQVVL_ 0 0 0 ENSG00000047621|ENST00000261250|C12orf4 ENSG00000047621|ENST00000261250|C12orf4 ENSG00000047621|ENST00000261250|C12orf4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2379455566406 2 457.271293 912.528032 0.12171 5.5656E-05 0.38486 0.00017599 0.50658 0.00023164 457.271302893168 114.83 0.64036 110.27 109.87 110.51 -4.555 42 17 3 0 0 0 0.66265 1 22038 22038 18.135 0 1 1374800 14352 1219 9355 9358 14446 14446 0.06826955557301062 EVVQQVVL 8 Unmodified _EVVQQVVL_ 0 0 0 ENSG00000047621|ENST00000261250|C12orf4 ENSG00000047621|ENST00000261250|C12orf4 ENSG00000047621|ENST00000261250|C12orf4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2377014160156 2 457.271293 912.528032 0.52539 0.00024024 0.13942 6.3754E-05 0.66481 0.000304 457.2711495272332 114.64 0.66562 110.33 109.89 110.55 -4.3136 38 18 3 0 0 0 0.66265 1 22073 22073 18.135 0 1 1654600 14353 1219 9355 9358 14447 14447 0.06826955557301062 EVVVKHAEPA 10 Unmodified _EVVVKHAEPA_ 0 0 0 nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3;nc|ENSG00000292277|Q9UJ98-2|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3 nc|ENSG00000292277|Q9UJ98|STAG3 nc|ENSG00000292277|Q9UJ98|STAG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 99.092 1 94.823 94.323 95.323 -4.2692 0 0 0 0.22588 1 18944 18944 6.1918 1.2948 1 14354 1379 9356 9359 14448 14448 0.0461712798901317 EVWELRTN 8 Unmodified _EVWELRTN_ 0 0 0 REV__ENSG00000147799|ENST00000377307|ARHGAP39 REV__ENSG00000147799|ENST00000377307|ARHGAP39 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6773681640625 2 523.766906 1045.51926 0.14479 7.5834E-05 0.9915 0.00051931 1.1363 0.00059515 523.7672961173326 86.56 0.46037 82.831 82.588 83.048 -3.7289 18 11 2 0 0 0 0.66247 1 16516 16516 18.146 0 1 1400500 + 14355 16951 9357 9360 14449 14449 -0.0016801807917090628 EVWPFGKG 8 Unmodified _EVWPFGKG_ 0 0 0 REV__ENSG00000171060|ENST00000304519|C8orf74 REV__ENSG00000171060|ENST00000304519|C8orf74 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2359619140625 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 116.59 1 112.1 111.6 112.6 -4.486 0 0 0 0.16809 1 22987 22987 26.884 0 1 + 14356 18197 9358 9361 14450 14450 -0.002538693027076988 EVWRYVILIYL 11 Unmodified _EVWRYVILIYL_ 0 0 0 nc|ENSG00000024526|Q5TB30-2|DEPDC1;ENSG00000024526|ENST00000456315|DEPDC1 nc|ENSG00000024526|Q5TB30-2|DEPDC1 nc|ENSG00000024526|Q5TB30-2|DEPDC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 734.1201782226562 2 733.923938 1465.83332 NaN NaN NaN NaN NaN NaN NaN 169.87 1 164.99 164.49 165.49 -4.873 0 0 0 0.23379 1 33583 33583 5.2969 3.9674 1 14357 1137 9359 9362 14451 14451 0.11903926630679962 EVWYDYKTFAH 11 Unmodified _EVWYDYKTFAH_ 0 0 0 ENSG00000214013|ENST00000318010|GANC ENSG00000214013|ENST00000318010|GANC ENSG00000214013|ENST00000318010|GANC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 486.8183898925781 3 486.894465 1457.66157 NaN NaN NaN NaN NaN NaN NaN 10.302 1 9.236 8.736 9.736 -1.0664 0 0 0 0.23698 1 1107 1107 0.094841 0 1 14358 7716 9360 9363 14452 14452 -0.04895850127695667 EVYKYKKERYY 11 Unmodified _EVYKYKKERYY_ 0 0 0 REV__ENST00000499638.6_1_12:121661214-121671021:+|nuORF REV__ENST00000499638.6_1_12:121661214-121671021:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6828002929688 3 523.608436 1567.80348 NaN NaN NaN NaN NaN NaN NaN 56.147 1 52.958 52.458 53.458 -3.1895 0 0 0 0.23698 1 10398 10398 0.45452 0.35968 1 + 14359 16248 9361 9364 14453 14453 0.042289428946787666 EVYLARQT 8 Unmodified _EVYLARQT_ 0 0 0 REV__ZNF460|p.N169Ifs*25|1|0.31|ENSG00000197714|chr19:57291044-57291044|A/-|frameshift_variant REV__ZNF460|p.N169Ifs*25|1|0.31|ENSG00000197714|chr19:57291044-57291044|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2643737792969 2 490.263999 978.513445 0.0073845 3.6203E-06 0.13078 6.4117E-05 0.13816 6.7737E-05 490.264027526858 56.438 1.1201 56.438 55.973 57.093 0 97 31 4 0 0 0 8448 1 10732 10732 20.454 19.796 1 20526000 + 14360 19360 9362 9365 14454 14454 0.023328834091330464 EVYMDDFRE 9 Unmodified _EVYMDDFRE_ 0 0 0 tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1 tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1 tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2747802734375 2 602.252971 1202.49139 NaN NaN NaN NaN NaN NaN NaN 141.38 1 136.39 135.89 136.89 -4.9877 0 0 0 0.23508 1 27224 27224 6.2058 0.97511 1 14361 26489 9363 9366 14455 14455 -0.10175709121608634 EVYNPETDQ 9 Unmodified _EVYNPETDQ_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7705688476562 2 547.735468 1093.45638 NaN NaN NaN NaN NaN NaN NaN 161.04 1 155.81 155.31 156.31 -5.2299 0 0 0 0.23508 1 31271 31271 7.2892 0.56607 1 14362 6323 9364 9367 14456 14456 -0.08660628657912639 EVYSEFTQQN 10 Unmodified _EVYSEFTQQN_ 0 0 0 REV__nc|ENSG00000101901|Q9NP73-4|ALG13 REV__nc|ENSG00000101901|Q9NP73-4|ALG13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7684326171875 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 167.39 1 162.6 162.1 163.1 -4.7898 0 0 0 0.22588 1 33752 33752 6.2058 0.47393 1 + 14363 14809 9365 9368 14457 14457 -0.07632981703750374 EVYSEFTQQN 10 Unmodified _EVYSEFTQQN_ 0 0 0 REV__nc|ENSG00000101901|Q9NP73-4|ALG13 REV__nc|ENSG00000101901|Q9NP73-4|ALG13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7778930664062 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 167.44 1 162.65 162.15 163.15 -4.7898 0 0 0 0.22588 1 33766 33766 6.2058 0.47393 1 + 14364 14809 9365 9368 14458 14458 -0.07632981703750374 EVYSTTEK 8 Unmodified _EVYSTTEK_ 0 0 0 ENST00000419026.5_1_3:196654728-196656532:+|nuORF ENST00000419026.5_1_3:196654728-196656532:+|nuORF ENST00000419026.5_1_3:196654728-196656532:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7408447265625 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 55.61 1 52.726 52.226 53.226 -2.8837 0 0 0 0.21452 1 10646 10646 13.508 0.97634 1 14365 9646 9366 9369 14459 14459 -0.02966521818621004 EWALTHTV 8 Unmodified _EWALTHTV_ 0 0 0 ENST00000477196.5_1_1:1025937-1026315:-|nuORF ENST00000477196.5_1_1:1025937-1026315:-|nuORF ENST00000477196.5_1_1:1025937-1026315:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7380065917969 2 478.745442 955.476331 NaN NaN NaN NaN NaN NaN NaN 70.408 1 67.159 66.659 67.659 -3.2492 0 0 0 0.048724 1 13699 13699 53.576 11.481 1 14366 10301 9367 9370 14460 14460 -0.0031878813664434347 EWCIRRPVPV 10 Unmodified _EWCIRRPVPV_ 0 0 0 REV__ENST00000521647.1_1_8:42045428-42045467:-|nuORF REV__ENST00000521647.1_1_8:42045428-42045467:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 418.907958984375 3 418.897375 1253.6703 NaN NaN NaN NaN NaN NaN NaN 9.4216 1 9.4216 8.9216 9.9216 0 0 0 0 0.22588 1 1086 1086 0.15932 0.064481 1 + 14367 22650 9368 9371 14461 14461 0.053608450277806696 EWCIRRPVPV 10 Unmodified _EWCIRRPVPV_ 0 0 0 REV__ENST00000521647.1_1_8:42045428-42045467:-|nuORF REV__ENST00000521647.1_1_8:42045428-42045467:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 418.8896179199219 3 418.897375 1253.6703 NaN NaN NaN NaN NaN NaN NaN 9.4385 1 9.4385 8.9385 9.9385 0 0 0 0 0.22588 1 1090 1090 0.15932 0.064481 1 + 14368 22650 9368 9371 14462 14462 0.053608450277806696 EWERRQRERER 11 Unmodified _EWERRQRERER_ 0 0 0 ZC3H18|p.R427W|1|0.37|ENSG00000158545|chr16:88611340-88611340|C/T|missense_variant ZC3H18|p.R427W|1|0.37|ENSG00000158545|chr16:88611340-88611340|C/T|missense_variant ZC3H18|p.R427W|1|0.37|ENSG00000158545|chr16:88611340-88611340|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3705444335938 2 815.419468 1628.82438 NaN NaN NaN NaN NaN NaN NaN 173.84 1 169.05 168.55 169.55 -4.7898 0 0 0 0.23698 1 35484 35484 0.86438 0 1 14369 26594 9369 9372 14463 14463 0.03512346046863968 EWERRRLEERY 11 Unmodified _EWERRRLEERY_ 0 0 0 REV__OTUD7B|p.R832W|1|0.41|ENSG00000264522|chr1:149943895-149943895|G/A|missense_variant REV__OTUD7B|p.R832W|1|0.41|ENSG00000264522|chr1:149943895-149943895|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2762451171875 3 541.277972 1620.81209 NaN NaN NaN NaN NaN NaN NaN 77.391 1 77.391 76.891 77.891 0 0 0 0 0.22632 1 15047 15047 0.026206 0 1 + 14370 24419 9370 9373 14464 14464 0.026513095838708978 EWERRRLEERY 11 Unmodified _EWERRRLEERY_ 0 0 0 REV__OTUD7B|p.R832W|1|0.41|ENSG00000264522|chr1:149943895-149943895|G/A|missense_variant REV__OTUD7B|p.R832W|1|0.41|ENSG00000264522|chr1:149943895-149943895|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2755737304688 3 541.277972 1620.81209 NaN NaN NaN NaN NaN NaN NaN 84.991 1 81.081 80.581 81.581 -3.9093 0 0 0 0.22632 1 16158 16158 0.026206 0.026206 1 + 14371 24419 9370 9373 14465 14465 0.026513095838708978 EWERRRLEERY 11 Unmodified _EWERRRLEERY_ 0 0 0 REV__OTUD7B|p.R832W|1|0.41|ENSG00000264522|chr1:149943895-149943895|G/A|missense_variant REV__OTUD7B|p.R832W|1|0.41|ENSG00000264522|chr1:149943895-149943895|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2780151367188 3 541.277972 1620.81209 NaN NaN NaN NaN NaN NaN NaN 134.99 1 130.1 129.6 130.6 -4.8951 0 0 0 0.22632 1 25930 25930 1.4074 0.82212 1 + 14372 24419 9370 9373 14466 14466 0.026513095838708978 EWFNEEMPY 9 Unmodified _EWFNEEMPY_ 0 0 0 REV__ENST00000569811.1_1_15:34858581-34875052:-|nuORF REV__ENST00000569811.1_1_15:34858581-34875052:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7522583007812 2 622.750064 1243.48558 NaN NaN NaN NaN NaN NaN NaN 11.742 1 10.838 10.338 11.338 -0.90401 0 0 0 0.23508 1 1579 1579 0.52476 0 1 + 14373 23157 9371 9374 14467 14467 -0.1264280763325587 EWHIRHTIKSS 11 Unmodified _EWHIRHTIKSS_ 0 0 0 REV__ENSG00000125730|ENST00000245907|C3 REV__ENSG00000125730|ENST00000245907|C3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2498779296875 3 465.249354 1392.72623 NaN NaN NaN NaN NaN NaN NaN 34.895 1 34.895 34.395 35.395 0 0 0 0 0.22632 1 6396 6396 0.58532 0 1 + 14374 15825 9372 9375 14468 14468 0.045577694689882264 EWHIRHTIKSS 11 Unmodified _EWHIRHTIKSS_ 0 0 0 REV__ENSG00000125730|ENST00000245907|C3 REV__ENSG00000125730|ENST00000245907|C3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2503662109375 3 465.249354 1392.72623 NaN NaN NaN NaN NaN NaN NaN 37.052 1 34.704 34.204 35.204 -2.3479 0 0 0 0.22632 1 6563 6563 0.58532 0.41332 1 + 14375 15825 9372 9375 14469 14469 0.045577694689882264 EWHSCVNPD 9 Unmodified _EWHSCVNPD_ 0 0 0 REV__nc|ENSG00000157890|A6BM72-3|MEGF11 REV__nc|ENSG00000157890|A6BM72-3|MEGF11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7695922851562 2 543.719098 1085.42364 NaN NaN NaN NaN NaN NaN NaN 129.16 1 124.34 123.84 124.84 -4.817 0 0 0 0.23508 1 24794 24794 9.3831 0 1 + 14376 17313 9373 9376 14470 14470 -0.11565114261725284 EWKQTTKS 8 Unmodified _EWKQTTKS_ 0 0 0 REV__ENSG00000109586|ENST00000265000|GALNT7 REV__ENSG00000109586|ENST00000265000|GALNT7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.50946044921875 3 336.510063 1006.50836 NaN NaN NaN NaN NaN NaN NaN 30.351 1 28.234 27.734 28.734 -2.1167 0 0 0 0.23626 1 5480 5480 0.0082765 0 1 + 14377 15167 9374 9377 14471 14471 0.005365795465195333 EWMIIEIRESS 11 Unmodified _EWMIIEIRESS_ 0 0 0 ENST00000414579.2_1_X:100056605-100057001:+|nuORF ENST00000414579.2_1_X:100056605-100057001:+|nuORF ENST00000414579.2_1_X:100056605-100057001:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2483825683594 3 464.89911 1391.6755 0.075008 3.4871E-05 0.090903 4.2261E-05 0.16591 7.7132E-05 464.8991777394362 154.58 0.66077 149.8 149.57 150.23 -4.7791 20 18 2 0 0 0 0.80907 1 30796 30796 2.4348 0.35082 1 1229100 14378 9603 9375 9378 14472 14472 -0.004669406908988094 EWMIIEIRESS 11 Unmodified _EWMIIEIRESS_ 0 0 0 ENST00000414579.2_1_X:100056605-100057001:+|nuORF ENST00000414579.2_1_X:100056605-100057001:+|nuORF ENST00000414579.2_1_X:100056605-100057001:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 464.89911 1391.6755 0.11677 5.4285E-05 -0.047182 -2.1935E-05 0.069586 3.235E-05 464.8991648975625 155.19 0.46631 149.91 149.57 150.03 -5.2854 0.068096 2.0907E-05 NaN 2.4348 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1651800 14379 9603 9375 9378 -0.004669406908988094 EWMIIEIRESS 11 Unmodified _EWMIIEIRESS_ 0 0 0 ENST00000414579.2_1_X:100056605-100057001:+|nuORF ENST00000414579.2_1_X:100056605-100057001:+|nuORF ENST00000414579.2_1_X:100056605-100057001:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 464.89911 1391.6755 0.39685 0.0001845 -0.20291 -9.4334E-05 0.19394 9.0163E-05 465.2332856860515 155.07 0.67769 149.81 149.4 150.08 -5.2526 -0.026721 -0.00019629 NaN 2.4348 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1613700 14380 9603 9375 9378 -0.004669406908988094 EWNCFFGY 8 Unmodified _EWNCFFGY_ 0 0 0 ENSG00000185269|ENST00000409678|NOTUM;NOTUM|p.Y325H|1|0.27|ENSG00000185269|chr17:81956665-81956665|A/G|missense_variant ENSG00000185269|ENST00000409678|NOTUM ENSG00000185269|ENST00000409678|NOTUM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2776489257812 2 533.210378 1064.4062 NaN NaN NaN NaN NaN NaN NaN 133.2 1 128.56 128.06 129.06 -4.6399 0 0 0 0.23711 1 26261 26261 0.62683 0.21856 1 14381 6975 9376 9379 14473 14473 -0.12342409796747233 EWNLYRQA 8 Unmodified _EWNLYRQA_ 0 0 0 REV__SCN5A|p.I696N|1|0.15|ENSG00000183873|chr3:38597904-38597904|A/T|missense_variant REV__SCN5A|p.I696N|1|0.15|ENSG00000183873|chr3:38597904-38597904|A/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20245361328125 3 360.513807 1078.51959 -1.8244 -0.00065771 -1.6927 -0.00061024 -3.5171 -0.001268 360.51310447561985 18.594 0.31649 17.079 16.95 17.267 -1.5148 16 8 3 0 0 0 0.98537 1 2753 2753 17.113 1.3743 1 394710 + 14382 24597 9377 9380 14474 14474 -0.01652598359351032 EWPCQMWAP 9 Unmodified _EWPCQMWAP_ 0 0 0 ENST00000550876.1_1_12:77158046-77208929:+|nuORF ENST00000550876.1_1_12:77158046-77208929:+|nuORF ENST00000550876.1_1_12:77158046-77208929:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3173217773438 2 574.238612 1146.46267 0.26978 0.00015492 -0.68028 -0.00039064 -0.4105 -0.00023572 574.2382041809626 73.93 0.8272 70.254 69.898 70.725 -3.6764 79 23 5 0 0 0 0.60805 1 13976 13976 12.532 3.1841 1 34087000 14383 11175 9378 9381 14475 14475 -0.10470105231729576 EWPCQMWAP 9 Unmodified _EWPCQMWAP_ 0 0 0 ENST00000550876.1_1_12:77158046-77208929:+|nuORF ENST00000550876.1_1_12:77158046-77208929:+|nuORF ENST00000550876.1_1_12:77158046-77208929:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 574.238612 1146.46267 0.070635 4.0561E-05 -0.7089 -0.00040708 -0.63826 -0.00036651 574.2381634629239 70.131 0.67184 70.131 69.777 70.449 0 -0.1022 -7.924E-05 NaN 12.532 63 18 4 NaN NaN NaN NaN 0 NaN NaN 0 40927000 14384 11175 9378 9381 -0.10470105231729576 EWPCQMWAP 9 Unmodified _EWPCQMWAP_ 0 0 0 ENST00000550876.1_1_12:77158046-77208929:+|nuORF ENST00000550876.1_1_12:77158046-77208929:+|nuORF ENST00000550876.1_1_12:77158046-77208929:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 574.238612 1146.46267 -0.14339 -8.234E-05 -0.32655 -0.00018752 -0.46994 -0.00026986 574.2383439124834 73.707 0.84184 70.343 69.972 70.814 -3.3643 0.10951 0.00035988 NaN 12.532 70 23 4 NaN NaN NaN NaN 0 NaN NaN 0 42106000 14385 11175 9378 9381 -0.10470105231729576 EWPCQMWAP 9 Unmodified _EWPCQMWAP_ 0 0 0 ENST00000550876.1_1_12:77158046-77208929:+|nuORF ENST00000550876.1_1_12:77158046-77208929:+|nuORF ENST00000550876.1_1_12:77158046-77208929:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 574.238612 1146.46267 0.38458 0.00022084 -0.83476 -0.00047935 -0.45018 -0.00025851 574.2381283150928 73.799 1.0868 70.205 69.867 70.954 -3.594 -0.027971 -0.00022379 NaN 12.532 81 30 4 NaN NaN NaN NaN 0 NaN NaN 0 38141000 14386 11175 9378 9381 -0.10470105231729576 EWQEQLQRS 9 Unmodified _EWQEQLQRS_ 0 0 0 REV__nc|ENSG00000206140|A6NGB0-1|TMEM191C REV__nc|ENSG00000206140|A6NGB0-1|TMEM191C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2899169921875 2 602.291276 1202.568 NaN NaN NaN NaN NaN NaN NaN 14.868 1 13.754 13.254 14.254 -1.1142 0 0 0 0.23508 1 2257 2257 1.4819 0 1 + 14387 19616 9379 9382 14476 14476 -0.025181495101151086 EWQNRFSDY 9 Unmodified _EWQNRFSDY_ 0 0 0 nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7718505859375 2 622.770177 1243.5258 NaN NaN NaN NaN NaN NaN NaN 40.382 1 37.748 37.248 38.248 -2.6348 0 0 0 0.19636 1 7525 7525 2.6312 0.70373 1 14388 4740 9380 9383 14477 14477 -0.08622124918451846 EWRQRLERRLR 11 Unmodified _EWRQRLERRLR_ 0 0 0 ENSG00000283329|ENST00000637493|FAM240B ENSG00000283329|ENST00000637493|FAM240B ENSG00000283329|ENST00000637493|FAM240B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.279541015625 3 533.309718 1596.90732 NaN NaN NaN NaN NaN NaN NaN 134.94 1 130.05 129.55 130.55 -4.8828 0 0 0 0.22632 1 25918 25918 0.094841 0.068635 1 14389 8057 9381 9384 14478 14478 0.13274707565528843 EWRQRLERRLR 11 Unmodified _EWRQRLERRLR_ 0 0 0 ENSG00000283329|ENST00000637493|FAM240B ENSG00000283329|ENST00000637493|FAM240B ENSG00000283329|ENST00000637493|FAM240B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2786865234375 3 533.309718 1596.90732 NaN NaN NaN NaN NaN NaN NaN 161.19 1 155.96 155.46 156.46 -5.2299 0 0 0 0.22632 1 31305 31305 0.50596 0.41111 1 14390 8057 9381 9384 14479 14479 0.13274707565528843 EWRREELYRQY 11 Unmodified _EWRREELYRQY_ 0 0 0 NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3652954101562 2 814.402421 1626.79029 0.60355 0.00049153 -1.1469 -0.00093401 -0.54332 -0.00044248 814.4024284445595 155.67 0.4558 150.89 150.7 151.16 -4.7791 17 12 2 0 0 0 0.8247 1 30946 30946 0.35063 0.043601 1 3105700 14391 12676 9382 9385 14480 14480 0.001965048352985832 EWRSVSYR 8 Unmodified _EWRSVSYR_ 0 0 0 REV__nc|ENSG00000151779|A2RRP1-2|NBAS REV__nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2755737304688 2 541.772522 1081.53049 0.033 1.7879E-05 0.55573 0.00030108 0.58873 0.00031896 541.7726510959295 52.548 0.2143 49.452 49.304 49.518 -3.0954 8 5 2 0 0 0 0.88497 1 9699 9699 10.074 7.1913 1 625860 + 14392 17084 9383 9386 14481 14481 -0.007011959850387939 EWRTPGSN 8 Unmodified _EWRTPGSN_ 0 0 0 REV__ENST00000532280.1_1_9:33675440-33676694:-|nuORF REV__ENST00000532280.1_1_9:33675440-33676694:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1514587402344 3 316.150758 945.430444 NaN NaN NaN NaN NaN NaN NaN 28.713 1 26.958 26.458 27.458 -1.7552 0 0 0 0.21486 1 4860 4860 1.4819 0.78423 1 + 14393 22785 9384 9387 14482 14482 -0.04445433318846881 EWRYRLYRRMK 11 Unmodified _EWRYRLYRRMK_ 0 0 0 ENSG00000153930|ENST00000682825|ANKFN1;nc|ENSG00000153930|Q8N957-2|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2926025390625 4 414.978047 1655.88308 -0.69767 -0.00028952 -0.060397 -2.5063E-05 -0.75806 -0.00031458 414.97803960518615 13.213 0.17276 12.04 11.938 12.111 -1.173 10 4 3 0 0 0 0.96228 1 1678 1678 0 0 1 322110 14394 4986 9385 9388 14483 14483 0.08137731087617794 EWRYRLYRRMK 11 Unmodified _EWRYRLYRRMK_ 0 0 0 ENSG00000153930|ENST00000682825|ANKFN1;nc|ENSG00000153930|Q8N957-2|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 414.978047 1655.88308 -0.82406 -0.00034197 0.30985 0.00012858 -0.5142 -0.00021338 415.22897764477716 13.218 0.10415 12.209 12.137 12.242 -1.0098 0.083156 -0.00016428 NaN 0 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 311940 14395 4986 9385 9388 0.08137731087617794 EWRYRLYRRMK 11 Unmodified _EWRYRLYRRMK_ 0 0 0 ENSG00000153930|ENST00000682825|ANKFN1;nc|ENSG00000153930|Q8N957-2|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 414.978047 1655.88308 -1.9823 -0.0008226 1.3517 0.00056091 -0.63062 -0.00026169 414.97849318727776 13.249 0.2025 12.128 12.026 12.229 -1.1206 0.0026368 0.001565 NaN 0 9 5 3 NaN NaN NaN NaN 0 NaN NaN 0 273670 14396 4986 9385 9388 0.08137731087617794 EWRYYEQLEWQ 11 Unmodified _EWRYYEQLEWQ_ 0 0 0 tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1 tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1 tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.36865234375 2 815.370255 1628.72596 NaN NaN NaN NaN NaN NaN NaN 73.861 1 73.861 73.361 74.361 0 0 0 0 0.22632 1 14333 14333 0.094841 0.068635 1 14397 26204 9386 9389 14484 14484 -0.06325695041527979 EWRYYEQLEWQ 11 Unmodified _EWRYYEQLEWQ_ 0 0 0 tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1 tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1 tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3703002929688 2 815.370255 1628.72596 NaN NaN NaN NaN NaN NaN NaN 107.84 1 103.43 102.93 103.93 -4.4121 0 0 0 0.22632 1 20690 20690 0.094841 0.087559 1 14398 26204 9386 9389 14485 14485 -0.06325695041527979 EWSPPAHEE 9 Unmodified _EWSPPAHEE_ 0 0 0 REV__nc|ENSG00000148541|Q8NE31-2|FAM13C REV__nc|ENSG00000148541|Q8NE31-2|FAM13C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2689208984375 2 541.232896 1080.45124 NaN NaN NaN NaN NaN NaN NaN 135.45 1 130.81 130.31 131.31 -4.6399 0 0 0 0.21065 1 26716 26716 20.454 1.1966 1 + 14399 16981 9387 9390 14486 14486 -0.08576887729873306 EWTESTPFIRI 11 Unmodified _EWTESTPFIRI_ 0 0 0 REV__ENST00000555422.5_1_14:76198560-76243086:+|nuORF REV__ENST00000555422.5_1_14:76198560-76243086:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2402038574219 3 460.238232 1377.69287 NaN NaN NaN NaN NaN NaN NaN 79.956 1 76.28 75.78 76.78 -3.676 0 0 0 0.22632 1 15238 15238 8.4443 7.859 1 + 14400 15591 9388 9391 14487 14487 0.019127229064224593 EWVETLWDCME 11 Unmodified _EWVETLWDCME_ 0 0 0 SCN7A|p.Y1475Ifs*11|1|0.43|ENSG00000136546|chr2:166406206-166406206|A/-|frameshift_variant;ENSG00000136546|ENST00000643258|SCN7A;SCN7A|p.D959Lfs*11|1|0.11|ENSG00000136546|chr2:166423411-166423412|-/AA|frameshift_variant SCN7A|p.Y1475Ifs*11|1|0.43|ENSG00000136546|chr2:166406206-166406206|A/-|frameshift_variant SCN7A|p.Y1475Ifs*11|1|0.43|ENSG00000136546|chr2:166406206-166406206|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23736572265625 3 480.865189 1439.57374 NaN NaN NaN NaN NaN NaN NaN 21.381 1 19.66 19.16 20.16 -1.7211 0 0 0 0.22632 1 3341 3341 0.094841 0 1 14401 4022 9389 9392 14488 14488 -0.12846555104943036 EWVFLILGF 9 Unmodified _EWVFLILGF_ 0 0 0 REV__nc|ENSG00000173264|Q96N19-5|GPR137 REV__nc|ENSG00000173264|Q96N19-5|GPR137 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 561.8683471679688 2 562.312961 1122.61137 0.49312 0.00027729 1.9133 0.0010759 2.4064 0.0013531 562.8149995846381 162.21 0.20677 157.03 156.95 157.16 -5.1878 6 5 2 0 0 0 0.54851 1 31499 31499 0.37959 0 1 2234900 + 14402 18346 9390 9393 14489 14489 0.054966920051583656 EWVRHLQR 8 Unmodified _EWVRHLQR_ 0 0 0 nc|ENSG00000011451|O95785-2|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ nc|ENSG00000011451|O95785-2|WIZ nc|ENSG00000011451|O95785-2|WIZ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2083435058594 3 375.20883 1122.60466 0.051707 1.9401E-05 -1.3968 -0.00052409 -1.3451 -0.00050469 375.2082743735327 52.657 0.42681 49.57 49.299 49.726 -3.0876 17 11 2 0 0 0 8448 1 9659 9659 0.12286 0 1 1158500 14403 1079 9391 9394 14490 14490 0.04826191897132048 EWWMVRYMTRY 11 Unmodified _EWWMVRYMTRY_ 0 0 0 REV__EGFL8|p.R83W|1|0.42|ENSG00000241404|chr6:32166723-32166723|C/T|missense_variant REV__EGFL8|p.R83W|1|0.42|ENSG00000241404|chr6:32166723-32166723|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2677001953125 3 540.919851 1619.73772 0.42855 0.00023181 -0.69713 -0.00037709 -0.26858 -0.00014528 541.2519714800261 149.51 0.18161 144.39 144.28 144.46 -5.1204 5 4 2 0 0 0 0.66298 1 28957 28957 0.026206 0 1 1202900 + 14404 13790 9392 9395 14491 14491 -0.04735492823556342 EWWMVRYMTRY 11 Unmodified _EWWMVRYMTRY_ 0 0 0 REV__EGFL8|p.R83W|1|0.42|ENSG00000241404|chr6:32166723-32166723|C/T|missense_variant REV__EGFL8|p.R83W|1|0.42|ENSG00000241404|chr6:32166723-32166723|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2733154296875 3 540.919851 1619.73772 0.42855 0.00023181 -0.69713 -0.00037709 -0.26858 -0.00014528 541.2519714800261 149.51 0.18161 144.39 144.28 144.46 -5.1204 5 4 2 0 0 0 0.96224 1 28983 28983 0.50596 0.41111 1 1202900 + 14405 13790 9392 9395 14492 14492 -0.04735492823556342 EWWRLWRRPRW 11 Unmodified _EWWRLWRRPRW_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.322021484375 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 70.998 1 70.998 70.498 71.498 0 0 0 0 0.22632 1 13750 13750 0 0 1 14406 25816 9393 9396 14493 14493 0.07776216779075185 EWWRLWRRPRW 11 Unmodified _EWWRLWRRPRW_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.328857421875 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 135.84 1 131.2 130.7 131.7 -4.6399 0 0 0 0.22632 1 26799 26799 0 0 1 14407 25816 9393 9396 14494 14494 0.07776216779075185 EWWRLWRRPRW 11 Unmodified _EWWRLWRRPRW_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3251953125 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 106.49 1 102.11 101.61 102.61 -4.3764 0 0 0 0.22632 1 20426 20426 0.094841 0.094841 1 14408 25816 9393 9396 14495 14495 0.07776216779075185 EWWRLWRRPRW 11 Unmodified _EWWRLWRRPRW_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3215942382812 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 107.42 1 103.01 102.51 103.51 -4.4121 0 0 0 0.22632 1 20610 20610 0.094841 0.068635 1 14409 25816 9393 9396 14496 14496 0.07776216779075185 EWWRLWRRPRW 11 Unmodified _EWWRLWRRPRW_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3229370117188 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 156.47 1 151.19 150.69 151.69 -5.2854 0 0 0 0.22632 1 30357 30357 0 0 1 14410 25816 9393 9396 14497 14497 0.07776216779075185 EWWRLWRRPRW 11 Unmodified _EWWRLWRRPRW_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3302612304688 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 159.51 1 154.24 153.74 154.74 -5.2748 0 0 0 0.22632 1 30961 30961 0.50596 0.41111 1 14411 25816 9393 9396 14498 14498 0.07776216779075185 EWWRLWRRPRW 11 Unmodified _EWWRLWRRPRW_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.322021484375 3 576.31117 1725.91168 0.31235 0.00018001 -3.7331 -0.0021514 -3.4208 -0.0019714 576.3097154619774 144.73 0.17145 139.78 139.69 139.86 -4.9445 7 4 3 0 0 0 0.66313 1 27970 27970 0 0 1 2901700 14412 25816 9393 9396 14499 14499 0.07776216779075185 EWWRLWRRPRW 11 Unmodified _EWWRLWRRPRW_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.319580078125 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 90.263 1 86.485 85.985 86.985 -3.7779 0 0 0 0.22632 1 17274 17274 0 0 1 14413 25816 9393 9396 14500 14500 0.07776216779075185 EWWRLWRRPRW 11 Unmodified _EWWRLWRRPRW_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3363647460938 3 576.31117 1725.91168 0.36004 0.00020749 -3.3902 -0.0019538 -3.0301 -0.0017463 576.6432266155698 150.01 0.1748 144.89 144.79 144.96 -5.1204 6 4 2 0 0 0 0.96227 1 29058 29058 0.094841 0.011491 1 1119000 14414 25816 9393 9396 14501 14501 0.07776216779075185 EWWSGPTP 8 Unmodified _EWWSGPTP_ 0 0 0 REV__nc|ENSG00000160753|Q9BVN2-2|RUSC1 REV__nc|ENSG00000160753|Q9BVN2-2|RUSC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24322509765625 2 480.216517 958.418482 -0.07996 -3.8398E-05 -0.3909 -0.00018772 -0.47086 -0.00022611 480.2162692232225 18.126 0.2857 16.815 16.649 16.935 -1.3109 17 7 3 0 0 0 8448 1 2931 2931 0.25148 0 1 1547900 + 14415 17432 9394 9397 14502 14502 -0.06239050062038132 EWYKQVQFSVQ 11 Unmodified _EWYKQVQFSVQ_ 0 0 0 REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2 REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2401123046875 3 481.241865 1440.70376 NaN NaN NaN NaN NaN NaN NaN 44.732 1 44.732 44.232 45.232 0 0 0 0 0.22632 1 8399 8399 0.026206 0 1 + 14416 17197 9395 9398 14503 14503 0.0010412528069991822 EYAKEESHT 9 Unmodified _EYAKEESHT_ 0 0 0 REV__ZNF844|p.K335Sfs*21|2|0.23|ENSG00000223547|chr19:12076120-12076120|A/-|frameshift_variant REV__ZNF844|p.K335Sfs*21|2|0.23|ENSG00000223547|chr19:12076120-12076120|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7865600585938 2 547.24346 1092.47237 0.11529 6.3093E-05 0.58703 0.00032125 0.70233 0.00038434 547.2438875805316 105.54 1.0839 101.17 100.46 101.54 -4.3764 62 30 3 0 0 0 0.65387 1 20294 20294 9.3831 0 1 7579700 + 14417 19714 9396 9399 14504 14504 -0.07016922420984884 EYCEVCCEVC 10 Unmodified _EYCEVCCEVC_ 0 0 0 ENST00000490777.2_10:133754257-133757569:+|nuORF ENST00000490777.2_10:133754257-133757569:+|nuORF ENST00000490777.2_10:133754257-133757569:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2610473632812 2 590.194896 1178.37524 NaN NaN NaN NaN NaN NaN NaN 157.22 1 151.95 151.45 152.45 -5.2712 0 0 0 0.22588 1 30498 30498 1.6526 1.1279 1 14418 10517 9397 9400 14505 14505 -0.20681435279811922 EYDFVKSEY 9 Unmodified _EYDFVKSEY_ 0 0 0 REV__ENSG00000147459|ENST00000276440|DOCK5 REV__ENSG00000147459|ENST00000276440|DOCK5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2613525390625 2 590.263862 1178.51317 NaN NaN NaN NaN NaN NaN NaN 53.648 1 53.648 53.148 54.148 0 0 0 0 0.23508 1 10220 10220 7.2892 1.5288 1 + 14419 16935 9398 9401 14506 14506 -0.06894581101346375 EYDYDYEDEED 11 Unmodified _EYDYDYEDEED_ 0 0 0 REV__nc|ENSG00000138193|Q9P212-2|PLCE1 REV__nc|ENSG00000138193|Q9P212-2|PLCE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.39404296875 2 742.746624 1483.47869 NaN NaN NaN NaN NaN NaN NaN 168.85 1 164.06 163.56 164.56 -4.7898 0 0 0 0.23698 1 34159 34159 0.30703 0.03801 1 + 14420 16447 9399 9402 14507 14507 -0.24370538561447574 EYEDESNY 8 Unmodified _EYEDESNY_ 0 0 0 REV__nc|ENSG00000068308|Q96G74-2|OTUD5 REV__nc|ENSG00000068308|Q96G74-2|OTUD5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6946411132812 2 524.690726 1047.3669 0.49541 0.00025994 1.3411 0.00070368 1.8365 0.00096361 524.6928137115599 45.975 1.425 45.975 45.27 46.695 0 70 33 3 0 0 0 8448 1 8634 8634 0.12286 0 1 1382500 + 14421 14225 9400 9403 14508 14508 -0.15488883337275183 EYEGEYEY 8 Unmodified _EYEGEYEY_ 0 0 0 IBSP|p.V257I|1|0.39|ENSG00000029559|chr4:87811725-87811725|G/A|missense_variant;ENSG00000029559|ENST00000226284|IBSP IBSP|p.V257I|1|0.39|ENSG00000029559|chr4:87811725-87811725|G/A|missense_variant IBSP|p.V257I|1|0.39|ENSG00000029559|chr4:87811725-87811725|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.276123046875 2 541.20347 1080.39239 0.095838 5.1868E-05 0.25985 0.00014063 0.35569 0.0001925 541.2035226701985 39.132 0.76424 36.69 36.336 37.1 -2.4419 47 21 3 0 0 0 0.93477 1 7003 7003 24.674 24.674 1 5929900 14422 1152 9401 9404 14509 14509 -0.14459408814832386 EYEKFVSEDD 10 Unmodified _EYEKFVSEDD_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant ENSG00000170606|ENST00000304858|HSPA4;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant ENSG00000170606|ENST00000304858|HSPA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.762939453125 2 630.766965 1259.51938 NaN NaN NaN NaN NaN NaN NaN 33.176 1 30.961 30.461 31.461 -2.2158 0 0 0 2.8426 1 5773 5773 1.9064 1.7665 1 14423 6085;11922 9402 9405 14510 14510 -0.10000107660516733 EYEMGDVKDWY 11 Unmodified _EYEMGDVKDWY_ 0 0 0 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7441101074219 3 478.867587 1433.58093 NaN NaN NaN NaN NaN NaN NaN 18.973 1 17.648 17.148 18.148 -1.3251 0 0 0 0.23698 1 2870 2870 1.2148 0.588 1 14424 26065 9403 9406 14511 14511 -0.1185149923287554 EYENETFLC 9 Carbamidomethyl (C) _EYENETFLC(Carbamidomethyl (C))_ EYENETFLC(1) EYENETFLC(78) 0 1 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2818603515625 2 602.744979 1203.4754 0.98823 0.00059565 -3.5517 -0.0021407 -2.5634 -0.0015451 602.7426754973072 66.572 0.34462 63.464 63.341 63.685 -3.1086 13 9 2 0 0 0 0.07121 1 12907 12907 78.149 28.216 1 1867100 14425 2864 9404 9407 14512 14512 4 -0.11819415358490915 EYENETFLC 9 Carbamidomethyl (C) _EYENETFLC(Carbamidomethyl (C))_ EYENETFLC(1) EYENETFLC(63) 0 1 0 ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 ENST00000451333.1_1_2:71037932-71038202:-|nuORF ENST00000451333.1_1_2:71037932-71038202:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2810668945312 2 602.744979 1203.4754 0.62946 0.00037941 -3.1461 -0.0018963 -2.5167 -0.0015169 602.7425149535479 67.117 0.28674 63.621 63.352 63.638 -3.4965 10 7 2 0 0 0 0.13813 1 12581 12581 62.573 24.599 1 768520 14426 2864 9404 9407 14513 14513 4 -0.11819415358490915 EYEQDERDQ 9 Unmodified _EYEQDERDQ_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.49957275390625 3 404.498551 1210.47382 -0.45986 -0.00018601 -0.70725 -0.00028608 -1.1671 -0.00047209 404.49823056497723 56.532 0.91843 53.356 53.119 54.037 -3.1761 75 25 4 0 0 0 0.50979 1 10527 10527 1.2148 0.36989 1 24475000 14427 1660 9405 9408 14514 14514 -0.12299333122905409 EYEQDERDQ 9 Unmodified _EYEQDERDQ_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 404.498551 1210.47382 -0.34179 -0.00013825 -0.86507 -0.00034992 -1.2069 -0.00048817 404.49815055859193 56.273 0.82362 53.378 53.133 53.957 -2.8944 -0.0063531 7.55E-05 NaN 1.2148 76 23 4 NaN NaN NaN NaN 0 NaN NaN 0 28679000 14428 1660 9405 9408 -0.12299333122905409 EYEQDERDQ 9 Unmodified _EYEQDERDQ_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 404.498551 1210.47382 0.05261 2.128E-05 -1.2707 -0.000514 -1.2181 -0.00049272 404.49798025668053 56.609 0.94345 53.42 53.09 54.034 -3.1895 0.03537 -0.00041675 NaN 1.2148 78 26 4 NaN NaN NaN NaN 0 NaN NaN 0 29576000 14429 1660 9405 9408 -0.12299333122905409 EYEQILEQFRN 11 Unmodified _EYEQILEQFRN_ 0 0 0 REV__ENSG00000198874|ENST00000359626|TYW1 REV__ENSG00000198874|ENST00000359626|TYW1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.264404296875 3 490.240412 1467.69941 NaN NaN NaN NaN NaN NaN NaN 123.45 1 118.88 118.38 119.38 -4.5757 0 0 0 0.22632 1 24332 24332 3.0723 0 1 + 14430 19469 9406 9409 14515 14515 -0.015733839328731847 EYEQILEQFRN 11 Unmodified _EYEQILEQFRN_ 0 0 0 REV__ENSG00000198874|ENST00000359626|TYW1 REV__ENSG00000198874|ENST00000359626|TYW1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640380859375 3 490.240412 1467.69941 NaN NaN NaN NaN NaN NaN NaN 123.62 1 118.89 118.39 119.39 -4.731 0 0 0 0.22632 1 23747 23747 3.0723 0 1 + 14431 19469 9406 9409 14516 14516 -0.015733839328731847 EYEYEDMEH 9 Unmodified _EYEYEDMEH_ 0 0 0 TSR1|p.D422E|1|0.12|ENSG00000167721|chr17:2333000-2333000|A/C|missense_variant TSR1|p.D422E|1|0.12|ENSG00000167721|chr17:2333000-2333000|A/C|missense_variant TSR1|p.D422E|1|0.12|ENSG00000167721|chr17:2333000-2333000|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7589721679688 2 622.724243 1243.43393 NaN NaN NaN NaN NaN NaN NaN 132.18 1 127.32 126.82 127.82 -4.8527 0 0 0 0.19626 1 25387 25387 0.0033805 0 1 14432 26532 9407 9410 14517 14517 -0.1780459611779861 EYFCENVD 8 Unmodified _EYFCENVD_ 0 0 0 REV__nc|ENSG00000177398|Q5DID0-3|UMODL1 REV__nc|ENSG00000177398|Q5DID0-3|UMODL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.4861145019531 3 340.132264 1017.37496 -0.26676 -9.0733E-05 -1.258 -0.00042789 -1.5248 -0.00051863 340.4664651968987 51.494 2.123 51.494 50.987 53.11 0 209 59 6 0 0 0 8448 1 9849 9849 6.2058 2.3599 1 62285000 + 14433 18555 9408 9411 14518 14518 -0.1330302762149813 EYGKPLSY 8 Unmodified _EYGKPLSY_ 0 0 0 CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant;ENSG00000079112|ENST00000027335|CDH17 CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7402648925781 2 478.739825 955.465098 NaN NaN NaN NaN NaN NaN NaN 64.113 1 61.115 60.615 61.615 -2.9975 0 0 0 0.21452 1 12396 12396 13.508 0.97634 1 14434 460 9409 9412 14519 14519 -0.014416102307677647 EYHDISGCY 9 Unmodified _EYHDISGCY_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1;ENST00000485821.1_1_1:220156057-220157598:-|nuORF ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7879638671875 2 543.713482 1085.41241 NaN NaN NaN NaN NaN NaN NaN 133.79 1 133.79 133.29 134.29 0 0 0 0 0.23508 1 26474 26474 4.756 0.42677 1 14435 4024 9410 9413 14520 14520 -0.12687936355860074 EYHDISGCY 9 Unmodified _EYHDISGCY_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1;ENST00000485821.1_1_1:220156057-220157598:-|nuORF ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7857666015625 2 543.713482 1085.41241 NaN NaN NaN NaN NaN NaN NaN 65.493 1 62.035 61.535 62.535 -3.4581 0 0 0 0.23508 1 12256 12256 8.5933 2.8329 1 14436 4024 9410 9413 14521 14521 -0.12687936355860074 EYHQATGTLSA 11 Unmodified _EYHQATGTLSA_ 0 0 0 STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant;STAT5B|p.K583Nfs*16|2|0.34|ENSG00000173757|chr17:42210429-42210429|T/-|frameshift_variant;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2685546875 2 589.277835 1176.54112 0.039147 2.3069E-05 0.35742 0.00021062 0.39657 0.00023369 589.2777852631509 59.931 0.66814 59.931 59.612 60.28 0 43 18 3 0 0 0 0.6353 1 11527 11527 16.149 5.3496 1 5179900 14437 3436 9411 9414 14522 14522 -0.04009258121277526 EYHQATGTLSA 11 Unmodified _EYHQATGTLSA_ 0 0 0 STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant;STAT5B|p.K583Nfs*16|2|0.34|ENSG00000173757|chr17:42210429-42210429|T/-|frameshift_variant;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.26318359375 2 589.277835 1176.54112 0.48994 0.00028871 -0.31749 -0.00018709 0.17245 0.00010162 589.2774989235754 63.058 0.75011 60.06 59.704 60.455 -2.9975 56 21 3 0 0 0 0.6353 1 12217 12217 16.149 16.149 1 7206400 14438 3436 9411 9414 14523 14523 -0.04009258121277526 EYHYTKEEQFK 11 Unmodified _EYHYTKEEQFK_ 0 0 0 COPS6|p.Y105H|1|0.36|ENSG00000168090|chr7:100089725-100089725|T/C|missense_variant COPS6|p.Y105H|1|0.36|ENSG00000168090|chr7:100089725-100089725|T/C|missense_variant COPS6|p.Y105H|1|0.36|ENSG00000168090|chr7:100089725-100089725|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 501.1882019042969 3 501.236779 1500.68851 NaN NaN NaN NaN NaN NaN NaN 30.389 1 28.496 27.996 28.996 -1.8928 0 0 0 0.22632 1 5208 5208 3.0723 3.0717 1 14439 709 9412 9415 14524 14524 -0.041807863071426254 EYIFRLFINNI 11 Unmodified _EYIFRLFINNI_ 0 0 0 REV__nc|ENSG00000066027|Q15172-2|PPP2R5A REV__nc|ENSG00000066027|Q15172-2|PPP2R5A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24334716796875 3 481.266122 1440.77654 NaN NaN NaN NaN NaN NaN NaN 59.332 1 59.332 58.832 59.832 0 0 0 0 0.22632 1 11366 11366 5.4027 4.8174 1 + 14440 14197 9413 9416 14525 14525 0.07377879074147131 EYIIAEKRG 9 Unmodified _EYIIAEKRG_ 0 0 0 ECHS1|p.L49Ffs*3|1|0.1|ENSG00000127884|chr10:133370696-133370699|GATC/-|frameshift_variant;ENSG00000127884|ENST00000368547|ECHS1 ECHS1|p.L49Ffs*3|1|0.1|ENSG00000127884|chr10:133370696-133370699|GATC/-|frameshift_variant ECHS1|p.L49Ffs*3|1|0.1|ENSG00000127884|chr10:133370696-133370699|GATC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201904296875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 71.587 1 67.959 67.459 68.459 -3.6275 0 0 0 0.23508 1 13503 13503 4.897 1.3005 1 14441 911 9414 9417 14526 14526 0.046171279889904326 EYIIAEKRG 9 Unmodified _EYIIAEKRG_ 0 0 0 ECHS1|p.L49Ffs*3|1|0.1|ENSG00000127884|chr10:133370696-133370699|GATC/-|frameshift_variant;ENSG00000127884|ENST00000368547|ECHS1 ECHS1|p.L49Ffs*3|1|0.1|ENSG00000127884|chr10:133370696-133370699|GATC/-|frameshift_variant ECHS1|p.L49Ffs*3|1|0.1|ENSG00000127884|chr10:133370696-133370699|GATC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.15704345703125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 71.702 1 68.164 67.664 68.664 -3.5385 0 0 0 0.23508 1 13595 13595 4.897 2.1618 1 14442 911 9414 9417 14527 14527 0.046171279889904326 EYIIAEKRG 9 Unmodified _EYIIAEKRG_ 0 0 0 ECHS1|p.L49Ffs*3|1|0.1|ENSG00000127884|chr10:133370696-133370699|GATC/-|frameshift_variant;ENSG00000127884|ENST00000368547|ECHS1 ECHS1|p.L49Ffs*3|1|0.1|ENSG00000127884|chr10:133370696-133370699|GATC/-|frameshift_variant ECHS1|p.L49Ffs*3|1|0.1|ENSG00000127884|chr10:133370696-133370699|GATC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 71.805 1 68.267 67.767 68.767 -3.5385 0 0 0 0.23508 1 13616 13616 4.897 2.1618 1 14443 911 9414 9417 14528 14528 0.046171279889904326 EYIKKEKLE 9 Unmodified _EYIKKEKLE_ 0 0 0 REV__tr|U7T5M0|U7T5M0_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00008PE=4SV=1 REV__tr|U7T5M0|U7T5M0_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00008PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2539672851562 2 590.334621 1178.65469 NaN NaN NaN NaN NaN NaN NaN 88.597 1 84.602 84.102 85.102 -3.9953 0 0 0 0.23508 1 16878 16878 10.824 0 1 + 14444 25416 9415 9418 14529 14529 0.07250836991738652 EYIQRPYL 8 Unmodified _EYIQRPYL_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2586059570312 2 541.287474 1080.5604 0.31134 0.00016852 0.8404 0.0004549 1.1517 0.00062342 541.2871893426824 144.76 0.72899 144.76 144.37 145.1 0 37 20 3 0 0 0 0.45067 2 28983 28881;28983 30.225 7.0764 1 6819000 + 14445 18092 9416 9419 14530;14531 14531 0.023337429602634074 EYIQRPYL 8 Unmodified _EYIQRPYL_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2725219726562 2 541.287474 1080.5604 0.31283 0.00016933 0.0019208 1.0397E-06 0.31475 0.00017037 541.2876055663992 149.54 0.73457 144.81 144.42 145.15 -4.7323 36 20 2 0 0 0 0.45067 1 29680 29680 30.225 8.4782 1 4900900 + 14446 18092 9416 9419 14532 14532 0.023337429602634074 EYIQRPYL 8 Unmodified _EYIQRPYL_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2757568359375 2 541.287474 1080.5604 0.1922 0.00010403 0.61274 0.00033167 0.80494 0.0004357 541.7893912990124 150.04 0.62292 144.84 144.5 145.13 -5.1994 28 17 2 0 0 0 0.23433 2 29058 29054;29058 42.095 4.1206 1 4690500 + 14447 18092 9416 9419 14533;14534 14534 0.023337429602634074 EYIQRPYL 8 Unmodified _EYIQRPYL_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2717895507812 2 541.287474 1080.5604 0.43332 0.00023455 0.094831 5.1331E-05 0.52816 0.00028588 541.2873005840137 149.78 0.78986 144.65 144.32 145.11 -5.1204 30 21 2 0 0 0 0.36038 2 29071 29066;29071 34.102 1.797 1 3657900 + 14448 18092 9416 9419 14535;14536 14536 0.023337429602634074 EYKDVDKKHV 10 Unmodified _EYKDVDKKHV_ 0 0 0 ENSG00000131236|ENST00000372805|CAP1;nc|ENSG00000131236|Q01518-2|CAP1;ENST00000476047.1_1_3:76483489-76483897:+|nuORF ENSG00000131236|ENST00000372805|CAP1;ENST00000476047.1_1_3:76483489-76483897:+|nuORF ENSG00000131236|ENST00000372805|CAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7591552734375 2 630.832777 1259.651 0.847 0.00053431 -0.29541 -0.00018635 0.55159 0.00034796 630.8324331516666 43.144 0.54232 40.425 40.231 40.774 -2.7191 16 14 2 0 0 0 0.53163 1 8050 8050 0.043787 0 1 2928900 14449 3664;10280 9417 9420 14537 14537 0.031561672178895606 EYKEMLVEY 9 Unmodified _EYKEMLVEY_ 0 0 0 REV__nc|ENSG00000184343|Q9UPE1-2|SRPK3 REV__nc|ENSG00000184343|Q9UPE1-2|SRPK3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2821044921875 2 602.28374 1202.55293 NaN NaN NaN NaN NaN NaN NaN 24.796 1 22.943 22.443 23.443 -1.8534 0 0 0 0.22251 1 4048 4048 16.942 4.7016 1 + 14450 18890 9418 9421 14538 14538 -0.04024777422296211 EYKRKKHY 8 Unmodified _EYKRKKHY_ 0 0 0 REV__ENST00000470475.1_1_1:45241268-45242451:+|nuORF REV__ENST00000470475.1_1_1:45241268-45242451:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3216552734375 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 68.859 1 65.468 64.968 65.968 -3.3903 0 0 0 0.21486 1 13009 13009 10.183 0.10947 1 + 14451 16694 9419 9422 14539 14539 0.055439428370846144 EYKSKFDDTA 10 Unmodified _EYKSKFDDTA_ 0 0 0 REV__ENSG00000204889|ENST00000377755|KRT40 REV__ENSG00000204889|ENST00000377755|KRT40 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2820434570312 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 23.07 1 23.07 22.57 23.57 0 0 0 0 0.22323 1 3921 3921 24.021 0.87215 1 + + 14452 13551 9420 9423 14540 14540 -0.047637936983846885 EYLGSRDTF 9 Unmodified _EYLGSRDTF_ 0 0 0 REV__DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant REV__DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.792724609375 2 544.256371 1086.49819 0.38382 0.0002089 -1.4701 -0.00080012 -1.0863 -0.00059122 544.254032031844 88.462 0.13649 84.467 84.362 84.499 -3.9953 5 3 2 0 0 0 0.8319 1 16852 16852 7.9102 7.1165 1 886530 + 14453 13682 9421 9424 14541 14541 -0.04160028178739594 EYMIRIMKKWA 11 Unmodified _EYMIRIMKKWA_ 0 0 0 nc|ENSG00000105948|A0AVF1-3|IFT56;ENSG00000105948|ENST00000464848|TTC26 nc|ENSG00000105948|A0AVF1-3|IFT56 nc|ENSG00000105948|A0AVF1-3|IFT56 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.263916015625 3 490.264959 1467.77305 NaN NaN NaN NaN NaN NaN NaN 63.267 1 60.27 59.77 60.77 -2.9975 0 0 0 0.22632 1 12222 12222 0.172 0 1 14454 2353 9422 9425 14542 14542 0.05787169704262851 EYNHSFER 8 Unmodified _EYNHSFER_ 0 0 0 tr|U7SU74|U7SU74_FUSNUEndoribonucleaseYbeYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ybeYPE=3SV=1 tr|U7SU74|U7SU74_FUSNUEndoribonucleaseYbeYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ybeYPE=3SV=1 tr|U7SU74|U7SU74_FUSNUEndoribonucleaseYbeYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ybeYPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.496337890625 3 361.161434 1080.46247 -0.24674 -8.9112E-05 0.73025 0.00026374 0.48351 0.00017463 361.1616651153064 21.213 1.1435 21.213 20.423 21.566 0 50 32 3 0 0 0 8448 1 3594 3594 0.62683 0 1 1476800 14455 26193 9423 9426 14543 14543 -0.07454065635715779 EYNTGYDYGY 10 Unmodified _EYNTGYDYGY_ 0 0 0 ENSG00000004534|ENST00000266022|RBM6;RBM6|p.K834Nfs*27|4|0.24|ENSG00000004534|chr3:50062017-50062017|A/-|frameshift_variant;RBM6|p.K760Nfs*101|1|0.25|ENSG00000004534|chr3:50061143-50061143|A/-|frameshift_variant;ENST00000441115.5_1_3:50012785-50103056:+|nuORF ENSG00000004534|ENST00000266022|RBM6 ENSG00000004534|ENST00000266022|RBM6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7784423828125 2 622.740751 1243.46695 NaN NaN NaN NaN NaN NaN NaN 62.425 1 62.425 61.925 62.925 0 0 0 0 0.22588 1 11988 11988 10.074 3.3508 1 14456 975 9424 9427 14544 14544 -0.14504646003479138 EYPFVAGF 8 Unmodified _EYPFVAGF_ 0 0 0 REV__ENSG00000007171|ENST00000313735|NOS2 REV__ENSG00000007171|ENST00000313735|NOS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2585754394531 2 465.223811 928.433069 NaN NaN NaN NaN NaN NaN NaN 52.259 1 49.163 48.663 49.663 -3.0954 0 0 0 0.20568 1 9643 9643 20.871 9.2309 1 + 14457 13883 9425 9428 14545 14545 -0.034009779139068996 EYPSGPEIME 10 Unmodified _EYPSGPEIME_ 0 0 0 ENSG00000104941|ENST00000221538|RSPH6A ENSG00000104941|ENST00000221538|RSPH6A ENSG00000104941|ENST00000221538|RSPH6A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3213500976562 2 576.249897 1150.48524 0.12948 7.4613E-05 0.21689 0.00012498 0.34637 0.0001996 576.2499867252293 90.73 0.67755 90.73 90.366 91.043 0 43 18 3 0 0 0 0.87854 1 17686 17686 13.906 12.062 1 8969600 14458 2269 9426 9429 14546 14546 -0.08398227353109178 EYPSGPEIME 10 Unmodified _EYPSGPEIME_ 0 0 0 ENSG00000104941|ENST00000221538|RSPH6A ENSG00000104941|ENST00000221538|RSPH6A ENSG00000104941|ENST00000221538|RSPH6A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3131713867188 2 576.249897 1150.48524 0.021589 1.2441E-05 0.020738 1.195E-05 0.042327 2.4391E-05 576.2499553200372 94.857 0.72482 90.976 90.606 91.331 -3.881 50 20 4 0 0 0 0.67319 1 18169 18169 13.906 3.0821 1 9976800 14459 2269 9426 9429 14547 14547 -0.08398227353109178 EYQDQRPPLD 10 Unmodified _EYQDQRPPLD_ 0 0 0 ENSG00000115998|ENST00000264434|C2orf42 ENSG00000115998|ENST00000264434|C2orf42 ENSG00000115998|ENST00000264434|C2orf42 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7767333984375 2 630.796392 1259.57823 NaN NaN NaN NaN NaN NaN NaN 119.41 1 114.94 114.44 115.44 -4.467 0 0 0 0.22588 1 22986 22986 8.7454 0 1 14460 2899 9427 9430 14548 14548 -0.04117586575534915 EYQINFDAPY 10 Unmodified _EYQINFDAPY_ 0 0 0 REV__INTS10|p.P232Lfs*10|1|0.24|ENSG00000104613|chr8:19823902-19823902|C/-|frameshift_variant REV__INTS10|p.P232Lfs*10|1|0.24|ENSG00000104613|chr8:19823902-19823902|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.769287109375 2 630.282586 1258.55062 NaN NaN NaN NaN NaN NaN NaN 40.072 1 37.523 37.023 38.023 -2.5491 0 0 0 0.22588 1 7458 7458 3.2813 0.28607 1 + 14461 14929 9428 9431 14549 14549 -0.06831489835781213 EYQLSDSAKY 10 Unmodified _EYQLSDSAKY_ 0 0 0 GNA11|p.G208Afs*16|1|0.38|ENSG00000088256|chr19:3118936-3118936|G/-|frameshift_variant;ENSG00000156049|ENST00000341700|GNA14;ENSG00000088256|ENST00000078429|GNA11 GNA11|p.G208Afs*16|1|0.38|ENSG00000088256|chr19:3118936-3118936|G/-|frameshift_variant GNA11|p.G208Afs*16|1|0.38|ENSG00000088256|chr19:3118936-3118936|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2799682617188 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 53.956 1 53.956 53.456 54.456 0 0 0 0 0.22588 1 10284 10284 10.074 2.1638 1 14462 1726 9429 9432 14550 14550 -0.047637936983846885 EYQLSDSAKY 10 Unmodified _EYQLSDSAKY_ 0 0 0 GNA11|p.G208Afs*16|1|0.38|ENSG00000088256|chr19:3118936-3118936|G/-|frameshift_variant;ENSG00000156049|ENST00000341700|GNA14;ENSG00000088256|ENST00000078429|GNA11 GNA11|p.G208Afs*16|1|0.38|ENSG00000088256|chr19:3118936-3118936|G/-|frameshift_variant GNA11|p.G208Afs*16|1|0.38|ENSG00000088256|chr19:3118936-3118936|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2871704101562 2 602.280043 1202.54553 0.42266 0.00025456 0.23519 0.00014165 0.65785 0.00039621 602.7821548637744 57.552 0.53804 54.301 54.078 54.616 -3.2517 21 14 2 0 0 0 0.72406 1 10655 10655 8.7454 0.83525 1 1298500 14463 1726 9429 9432 14551 14551 -0.047637936983846885 EYQRLPQRPGE 11 Unmodified _EYQRLPQRPGE_ 0 0 0 NPC1L1|p.R726Q|1|0.34|ENSG00000015520|chr7:44533843-44533843|C/T|missense_variant NPC1L1|p.R726Q|1|0.34|ENSG00000015520|chr7:44533843-44533843|C/T|missense_variant NPC1L1|p.R726Q|1|0.34|ENSG00000015520|chr7:44533843-44533843|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2249450683594 3 458.237114 1371.68951 NaN NaN NaN NaN NaN NaN NaN 65.574 1 62.527 62.027 63.027 -3.047 0 0 0 0.22632 1 12695 12695 0.03141 0.0052036 1 14464 12706 9430 9433 14552 14552 0.01853472852417326 EYRENELE 8 Unmodified _EYRENELE_ 0 0 0 REV__ENSG00000151466|ENST00000281142|SCLT1;REV__ENST00000502495.1_1_4:129873642-129918394:-|nuORF REV__ENST00000502495.1_1_4:129873642-129918394:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.259521484375 2 541.24346 1080.47237 NaN NaN NaN NaN NaN NaN NaN 128.89 1 128.89 128.39 129.39 0 0 0 0 0.21486 1 25454 25454 5.2307 0 1 + 14465 17068;22438 9431 9434 14553 14553 -0.0646492242099157 EYRHVRRRRRL 11 Unmodified _EYRHVRRRRRL_ 0 0 0 REV__ENSG00000112996|ENST00000507110|MRPS30 REV__ENSG00000112996|ENST00000507110|MRPS30 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27783203125 3 532.985457 1595.93454 NaN NaN NaN NaN NaN NaN NaN 124.67 1 120.02 119.52 120.52 -4.6495 0 0 0 0.22632 1 23989 23989 0.026206 0.026206 1 + 14466 15324 9432 9435 14554 14554 0.1604123589656865 EYRIQMEL 8 Unmodified _EYRIQMEL_ 0 0 0 ATG2B|p.V745Lfs*6|1|0.47|ENSG00000066739|chr14:96325854-96325854|T/-|frameshift_variant;ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant;ATG2B|p.F1495Lfs*16|1|0.09|ENSG00000066739|chr14:96306735-96306735|A/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B ATG2B|p.V745Lfs*6|1|0.47|ENSG00000066739|chr14:96325854-96325854|T/-|frameshift_variant ATG2B|p.V745Lfs*6|1|0.47|ENSG00000066739|chr14:96325854-96325854|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2728881835938 2 541.270967 1080.52738 0.22166 0.00011998 1.1098 0.00060071 1.3315 0.00072068 541.2717224711204 81.335 0.34166 77.778 77.618 77.959 -3.557 15 9 2 0 0 0 0.69713 1 15905 15905 14.838 0.93222 1 768120 14467 251 9433 9436 14555 14555 -0.009662071540560646 EYRKPKRPNIN 11 Unmodified _EYRKPKRPNIN_ 0 0 0 REV__ENSG00000249715|ENST00000624922|FER1L5 REV__ENSG00000249715|ENST00000624922|FER1L5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 472.2729797363281 3 472.268637 1413.78408 NaN NaN NaN NaN NaN NaN NaN 159.79 1 154.56 154.06 155.06 -5.2299 0 0 0 0.22632 1 31018 31018 0.58532 0 1 + 14468 19822 9434 9437 14556 14556 0.09374031394440863 EYRNTPSWLIY 11 Unmodified _EYRNTPSWLIY_ 0 0 0 REV__tr|U7SGF5|U7SGF5_FUSNUDUF4015domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02285PE=4SV=1 REV__tr|U7SGF5|U7SGF5_FUSNUDUF4015domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02285PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2418518066406 3 481.241865 1440.70376 0.30889 0.00014865 -0.45844 -0.00022062 -0.14954 -7.1967E-05 481.2417715126485 74.138 1.0229 70.544 69.758 70.781 -3.594 73 28 3 0 0 0 0.62176 1 14079 14079 0.58532 0 1 3378500 + 14469 24874 9435 9438 14557 14557 0.0010412528072265559 EYRQEASRELL 11 Unmodified _EYRQEASRELL_ 0 0 0 IGSF9B|p.G435S|1|0.24|ENSG00000080854|chr11:133931518-133931518|C/T|missense_variant IGSF9B|p.G435S|1|0.24|ENSG00000080854|chr11:133931518-133931518|C/T|missense_variant IGSF9B|p.G435S|1|0.24|ENSG00000080854|chr11:133931518-133931518|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24163818359375 3 465.240524 1392.69974 NaN NaN NaN NaN NaN NaN NaN 34.918 1 32.642 32.142 33.142 -2.2766 0 0 0 0.22632 1 6131 6131 1.4551 0 1 14470 11939 9436 9439 14558 14558 0.01910035787000197 EYRQRYRTEIR 11 Unmodified _EYRQRYRTEIR_ 0 0 0 ENST00000600588.1_1_19:6593418-6593715:+|nuORF ENST00000600588.1_1_19:6593418-6593715:+|nuORF ENST00000600588.1_1_19:6593418-6593715:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3827514648438 2 785.415862 1568.81717 NaN NaN NaN NaN NaN NaN NaN 154.41 1 154.41 153.91 154.91 0 0 0 0 0.22632 1 30951 30951 0.094841 0 1 14471 11703 9437 9440 14559 14559 0.055516134464369316 EYSCGGGG 8 Unmodified _EYSCGGGG_ 0 0 0 REV__ENST00000444945.1_1_19:11777510-11777738:-|nuORF REV__ENST00000444945.1_1_19:11777510-11777738:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 365.1817626953125 2 365.129054 728.243554 NaN NaN NaN NaN NaN NaN NaN 49.044 1 46.037 45.537 46.537 -3.0068 0 0 0 0.2343 1 8988 8988 0.25148 0 1 + 14472 21744 9438 9441 14560 14560 -0.13143793198719322 EYSEELKLLRN 11 Unmodified _EYSEELKLLRN_ 0 0 0 REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25048828125 3 465.248908 1392.72489 NaN NaN NaN NaN NaN NaN NaN 69.405 1 69.405 68.905 69.905 0 0 0 0 0.22632 1 13438 13438 0.172 0 1 + 14473 15775 9439 9442 14561 14561 0.044240905895549076 EYSIILVSY 9 Unmodified _EYSIILVSY_ 0 0 0 REV__ENSG00000197275|ENST00000336148|RAD54B REV__ENSG00000197275|ENST00000336148|RAD54B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7913818359375 2 543.789515 1085.56448 NaN NaN NaN NaN NaN NaN NaN 65.21 1 61.927 61.427 62.427 -3.2832 0 0 0 0.23508 1 12254 12254 12.532 3.9383 1 + 14474 19318 9440 9443 14562 14562 0.02511787663343057 EYSLLIYVS 9 Unmodified _EYSLLIYVS_ 0 0 0 nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENSG00000265972|ENST00000582401|TXNIP nc|ENSG00000265972|Q9H3M7-2|TXNIP nc|ENSG00000265972|Q9H3M7-2|TXNIP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.793212890625 2 543.789515 1085.56448 NaN NaN NaN NaN NaN NaN NaN 166.42 1 166.42 165.92 166.92 0 0 0 0 0.23508 1 33898 33898 7.9102 0 1 14475 7980 9441 9444 14563 14563 0.02511787663343057 EYSRLKTEL 9 Unmodified _EYSRLKTEL_ 0 0 0 REV__nc|ENSG00000061337|Q9Y250-5|LZTS1 REV__nc|ENSG00000061337|Q9Y250-5|LZTS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 380.1699523925781 3 380.208273 1137.60299 NaN NaN NaN NaN NaN NaN NaN 86.536 1 82.809 82.309 83.309 -3.727 0 0 0 0.23508 1 16916 16916 5.2969 0.39987 1 + 14476 14149 9442 9445 14564 14564 0.03969093297882864 EYSYIYDEY 9 Unmodified _EYSYIYDEY_ 0 0 0 REV__tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 REV__tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7537841796875 2 622.753327 1243.4921 NaN NaN NaN NaN NaN NaN NaN 32.745 1 32.745 32.245 33.245 0 0 0 0 0.23508 1 5958 5958 7.9102 2.1783 1 + 14477 25232 9443 9446 14565 14565 -0.1199059120090169 EYTCVEFLIS 10 Unmodified _EYTCVEFLIS_ 0 0 0 ENST00000566423.5_1_15:52843943-52844036:-|nuORF ENST00000566423.5_1_15:52843943-52844036:-|nuORF ENST00000566423.5_1_15:52843943-52844036:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2962036132812 2 602.28374 1202.55293 NaN NaN NaN NaN NaN NaN NaN 123.62 1 119.02 118.52 119.52 -4.5926 0 0 0 0.22588 1 23795 23795 6.7232 0.51738 1 14478 11367 9444 9447 14566 14566 -0.04024777422296211 EYTESFDR 8 Unmodified _EYTESFDR_ 0 0 0 REV__ENSG00000186834|ENST00000332499|HEXIM1 REV__ENSG00000186834|ENST00000332499|HEXIM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6890869140625 2 523.724904 1045.43525 0.36063 0.00018887 -2.2123 -0.0011587 -1.8517 -0.00096978 524.2240994311434 65.966 0.38511 62.683 62.406 62.791 -3.2832 14 10 2 0 0 0 0.97966 1 12375 12375 16.942 6.1184 1 515970 + 14479 19056 9445 9448 14567 14567 -0.08564593966752909 EYTESFDR 8 Unmodified _EYTESFDR_ 0 0 0 REV__ENSG00000186834|ENST00000332499|HEXIM1 REV__ENSG00000186834|ENST00000332499|HEXIM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.724904 1045.43525 -0.1319 -6.9082E-05 -2.9275 -0.0015332 -3.0594 -0.0016023 524.2236809417303 62.864 0.25271 62.864 62.73 62.982 0 0.090892 -0.00040667 NaN 16.942 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1063600 + 14480 19056 9445 9448 -0.08564593966752909 EYTFLARF 8 Unmodified _EYTFLARF_ 0 0 0 REV__ENST00000497184.5_1_7:44089593-44089926:+|nuORF REV__ENST00000497184.5_1_7:44089593-44089926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6915283203125 2 523.768917 1045.52328 NaN NaN NaN NaN NaN NaN NaN 153.5 1 148.24 147.74 148.74 -5.2669 0 0 0 0.21171 1 29754 29754 15.847 1.9411 1 + 14481 22399 9446 9449 14568 14568 0.0023407141450206836 EYVECPTYNQ 10 Unmodified _EYVECPTYNQ_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant;REV__nc|ENSG00000157423|Q4G0P3-8|HYDIN REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7667846679688 2 623.258253 1244.50195 NaN NaN NaN NaN NaN NaN NaN 121.06 1 116.53 116.03 117.03 -4.5305 0 0 0 2.8426 1 23311 23311 0.043787 0.042406 1 + 14482 23644;24109 9447 9450 14569 14569 -0.110517264671671 EYVWLWRFDRQ 11 Unmodified _EYVWLWRFDRQ_ 0 0 0 REV__nc|ENSG00000165675|Q16206|ENOX2 REV__nc|ENSG00000165675|Q16206|ENOX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2685546875 3 533.268525 1596.78375 NaN NaN NaN NaN NaN NaN NaN 155.93 1 151.15 150.65 151.65 -4.7791 0 0 0 0.22632 1 30996 30996 1.4551 1.4289 1 + 14483 24147 9448 9451 14570 14570 0.009226116745367108 EYVWYDRLLPD 11 Unmodified _EYVWYDRLLPD_ 0 0 0 REV__ENSG00000178538|ENST00000317995|CA8 REV__ENSG00000178538|ENST00000317995|CA8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26568603515625 3 490.241753 1467.70343 NaN NaN NaN NaN NaN NaN NaN 124.05 1 119.47 118.97 119.97 -4.5757 0 0 0 0.22632 1 24458 24458 2.732 2.7006 1 + 14484 18609 9449 9452 14571 14571 -0.011712944391547353 EYVWYDRLLPD 11 Unmodified _EYVWYDRLLPD_ 0 0 0 REV__ENSG00000178538|ENST00000317995|CA8 REV__ENSG00000178538|ENST00000317995|CA8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26434326171875 3 490.241753 1467.70343 NaN NaN NaN NaN NaN NaN NaN 124.01 1 119.42 118.92 119.92 -4.5926 0 0 0 0.22632 1 23866 23866 1.4074 0.74936 1 + 14485 18609 9449 9452 14572 14572 -0.011712944391547353 EYYARASVYK 10 Unmodified _EYYARASVYK_ 0 0 0 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 417.505126953125 3 417.211906 1248.61389 0.26599 0.00011097 -0.32499 -0.00013559 -0.059006 -2.4618E-05 417.2117404955588 31.448 0.81186 29.422 29.093 29.905 -2.0264 77 22 5 0 0 0 0.74977 1 5386 5386 5.7834 0.48655 1 45631000 + 14486 16173 9450 9453 14573 14573 -0.0004750432788114267 EYYARASVYK 10 Unmodified _EYYARASVYK_ 0 0 0 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 417.211906 1248.61389 0.097413 4.0642E-05 -0.25182 -0.00010506 -0.1544 -6.4419E-05 417.211775708741 29.289 0.69627 29.289 28.985 29.681 0 -0.10304 -4.8076E-05 NaN 5.7834 69 19 6 NaN NaN NaN NaN 0 NaN NaN 0 51054000 + 14487 16173 9450 9453 -0.0004750432788114267 EYYARASVYK 10 Unmodified _EYYARASVYK_ 0 0 0 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 417.211906 1248.61389 0.10778 4.4967E-05 -0.075386 -3.1452E-05 0.032395 1.3516E-05 417.2118452307038 31.694 0.87901 29.464 29.129 30.008 -2.2305 0.071658 0.00017275 NaN 5.7834 73 24 5 NaN NaN NaN NaN 0 NaN NaN 0 44389000 + 14488 16173 9450 9453 -0.0004750432788114267 EYYARASVYK 10 Unmodified _EYYARASVYK_ 0 0 0 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 417.211906 1248.61389 0.26599 0.00011097 -0.32499 -0.00013559 -0.059006 -2.4618E-05 417.2117404955588 31.448 0.81186 29.422 29.093 29.905 -2.0264 0.029436 -0.00013966 NaN 5.7834 77 22 5 NaN NaN NaN NaN 0 NaN NaN 0 45631000 + 14489 16173 9450 9453 -0.0004750432788114267 EYYARASVYK 10 Unmodified _EYYARASVYK_ 0 0 0 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 417.211906 1248.61389 0.13988 5.8359E-05 -0.15894 -6.6311E-05 -0.019061 -7.9524E-06 417.2118167980764 31.542 0.9799 29.394 29.091 30.071 -2.1483 0.0019439 6.8172E-05 NaN 5.7834 95 27 5 NaN NaN NaN NaN 0 NaN NaN 0 41613000 + 14490 16173 9450 9453 -0.0004750432788114267 EYYEKPGFF 9 Unmodified _EYYEKPGFF_ 0 0 0 REV__nc|ENSG00000139714|Q6PF18-2|MORN3 REV__nc|ENSG00000139714|Q6PF18-2|MORN3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.272216796875 2 590.27149 1178.52843 NaN NaN NaN NaN NaN NaN NaN 67.361 1 64.253 63.753 64.753 -3.1086 0 0 0 0.23508 1 13064 13064 4.756 0 1 + 14491 16538 9451 9454 14574 14574 -0.05369669513538611 EYYKSCNEALY 11 Unmodified _EYYKSCNEALY_ 0 0 0 REV__nc|ENSG00000141258|O43147-5|SGSM2 REV__nc|ENSG00000141258|O43147-5|SGSM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5341796875 3 461.535949 1381.58602 NaN NaN NaN NaN NaN NaN NaN 92.298 1 88.372 87.872 88.872 -3.9251 0 0 0 0.2341 1 18074 18074 5.0475 0.3316 1 + 14492 16616 9452 9455 14575 14575 -0.08951195370241294 EYYRQQMEE 9 Unmodified _EYYRQQMEE_ 0 0 0 ENSG00000183576|ENST00000331768|SETD3;SETD3|p.R486W|1|0.38|ENSG00000183576|chr14:99399008-99399008|G/A|missense_variant ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24945068359375 3 425.848527 1274.52375 0.10316 4.3932E-05 1.151 0.00049017 1.2542 0.0005341 425.8489159582337 75.305 0.8624 71.582 71.308 72.17 -3.7227 77 24 5 0 0 0 0.83265 1 14312 14312 10.151 3.9587 1 7878600 14493 6854 9453 9456 14576 14576 -0.10252921718574726 EYYRQQMEE 9 Unmodified _EYYRQQMEE_ 0 0 0 ENSG00000183576|ENST00000331768|SETD3;SETD3|p.R486W|1|0.38|ENSG00000183576|chr14:99399008-99399008|G/A|missense_variant ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 425.848527 1274.52375 -0.21256 -9.0518E-05 1.6102 0.00068569 1.3976 0.00059517 425.84916819993055 75.113 0.82518 71.749 71.45 72.276 -3.3643 0.12461 0.00018738 NaN 10.151 68 23 4 NaN NaN NaN NaN 0 NaN NaN 0 9321400 14494 6854 9453 9456 -0.10252921718574726 EYYYIWKKMIK 11 Unmodified _EYYYIWKKMIK_ 0 0 0 nc|ENSG00000118156|Q9H0D2-2|ZNF541;ENSG00000118156|ENST00000391901|ZNF541 nc|ENSG00000118156|Q9H0D2-2|ZNF541 nc|ENSG00000118156|Q9H0D2-2|ZNF541 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2774047851562 3 522.279262 1563.81596 NaN NaN NaN NaN NaN NaN NaN 41.924 1 39.273 38.773 39.773 -2.651 0 0 0 0.22632 1 7538 7538 0.11104 0.11048 1 14495 3017 9454 9457 14577 14577 0.0566026303331455 EYYYLWKKSER 11 Unmodified _EYYYLWKKSER_ 0 0 0 ENSG00000105556|ENST00000264819|MIER2 ENSG00000105556|ENST00000264819|MIER2 ENSG00000105556|ENST00000264819|MIER2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2618408203125 3 522.264669 1563.77218 NaN NaN NaN NaN NaN NaN NaN 129.14 1 124.33 123.83 124.83 -4.817 0 0 0 0.22632 1 24791 24791 0.50596 0 1 14496 2318 9455 9458 14578 14578 0.01284369860559309 FAAAVGSG 8 Unmodified _FAAAVGSG_ 0 0 0 ENST00000568088.5_3_16:68298472-68307791:+|nuORF;ENST00000564708.1_3_16:68298487-68308679:+|nuORF ENST00000568088.5_3_16:68298472-68307791:+|nuORF ENST00000568088.5_3_16:68298472-68307791:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.1753234863281 2 340.174121 678.33369 NaN NaN NaN NaN NaN NaN NaN 81.264 1 81.264 80.764 81.764 0 0 0 0 0.2396 1 15824 15824 0.30703 0.29875 1 14497 11348 9456 9459 14579 14579 -0.018343758079822692 FAAKAGARK 9 Unmodified _FAAKAGARK_ 0 0 0 ENST00000525616.1_1_19:50180537-50188241:+|nuORF;nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1 ENST00000525616.1_1_19:50180537-50188241:+|nuORF ENST00000525616.1_1_19:50180537-50188241:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23297119140625 2 460.277244 918.539935 NaN NaN NaN NaN NaN NaN NaN 89.42 1 85.56 85.06 86.06 -3.8595 0 0 0 0.19622 1 17501 17501 0.96228 0.96228 1 14498 3430 9457 9460 14580 14580 0.07740617091121749 FAAWWIPA 8 Unmodified _FAAWWIPA_ 0 0 0 tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1 tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1 tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24822998046875 2 481.250163 960.485774 0.039846 1.9176E-05 0.87254 0.00041991 0.91238 0.00043908 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 8448 1 7332 7332 4.2837 2.8286 1 69706000 14499 25908 9458 9461 14581 14581 0.003950249395529681 FADLCSSLNQF 11 Unmodified _FADLCSSLNQF_ 0 0 0 nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7594604492188 2 622.784438 1243.55432 NaN NaN NaN NaN NaN NaN NaN 62.238 1 58.998 58.498 59.498 -3.2395 0 0 0 0.23379 1 11666 11666 5.2969 0 1 14500 7500 9459 9462 14582 14582 -0.057711433335725815 FAEELATLSN 10 Unmodified _FAEELATLSN_ 0 0 0 nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1;ENST00000563604.1_1_15:43016691-43016850:-|nuORF nc|ENSG00000140326|Q8IWY9-1|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7936401367188 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 61.712 1 58.751 58.251 59.251 -2.9614 0 0 0 0.22573 1 11900 11900 15.248 2.7169 1 14501 4291 9460 9463 14583 14583 -0.01386874864465426 FAENNITQSK 10 Unmodified _FAENNITQSK_ 0 0 0 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3257446289062 2 576.288202 1150.56185 0.21577 0.00012435 -0.017381 -1.0017E-05 0.19839 0.00011433 576.2883074865006 36.812 0.44477 34.464 34.243 34.687 -2.3479 22 12 2 0 0 0 0.39316 1 6506 6506 31.268 5.0002 1 1783800 + 14502 14454 9461 9464 14584 14584 -0.0074066774163839 FAENNITQSK 10 Unmodified _FAENNITQSK_ 0 0 0 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.288202 1150.56185 0.29081 0.00016759 -0.97645 -0.00056272 -0.68564 -0.00039513 576.288129455431 34.338 0.44396 34.338 34.073 34.517 0 -0.064425 -0.0008586 NaN 31.268 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1530800 + 14503 14454 9461 9464 -0.0074066774163839 FAENNITQSK 10 Unmodified _FAENNITQSK_ 0 0 0 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.288202 1150.56185 0.21577 0.00012435 -0.017381 -1.0017E-05 0.19839 0.00011433 576.2883074865006 36.812 0.44477 34.464 34.243 34.687 -2.3479 0.061723 0.0002468 NaN 31.268 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1783800 + 14504 14454 9461 9464 -0.0074066774163839 FAENNITQSK 10 Unmodified _FAENNITQSK_ 0 0 0 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.288202 1150.56185 0.26675 0.00015373 -0.33615 -0.00019372 -0.069395 -3.9991E-05 576.2881932227403 36.768 0.49387 34.431 34.169 34.663 -2.3375 0.027905 -0.0001206 NaN 31.268 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1116300 + 14505 14454 9461 9464 -0.0074066774163839 FAFNHEYLY 9 Unmodified _FAFNHEYLY_ 0 0 0 REV__PIGV|p.F88V|1|0.1|ENSG00000060642|chr1:26794296-26794296|T/G|missense_variant REV__PIGV|p.F88V|1|0.1|ENSG00000060642|chr1:26794296-26794296|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2805786132812 2 602.277106 1202.53966 NaN NaN NaN NaN NaN NaN NaN 90.371 1 86.512 86.012 87.012 -3.8595 0 0 0 0.19704 1 17679 17679 1.2148 0.36989 1 + 14506 14144 9462 9465 14585 14585 -0.053508474193904476 FAGFYFSWGY 10 Unmodified _FAGFYFSWGY_ 0 0 0 REV__ENSG00000006116|ENST00000005284|CACNG3 REV__ENSG00000006116|ENST00000005284|CACNG3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7742309570312 2 622.7742 1243.53385 NaN NaN NaN NaN NaN NaN NaN 78.263 1 74.8 74.3 75.3 -3.4633 0 0 0 2.8426 1 15283 15283 0.84494 0.83168 1 + 14507 13869 9463 9466 14586 14586 -0.07817945931037684 FAGPHGDA 8 Unmodified _FAGPHGDA_ 0 0 0 REV__ENSG00000128645|ENST00000331462|HOXD1 REV__ENSG00000128645|ENST00000331462|HOXD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 386.19427490234375 2 386.174653 770.334752 NaN NaN NaN NaN NaN NaN NaN 20.443 1 19.046 18.546 19.546 -1.3966 0 0 0 0.23899 1 3418 3418 1.3295 0.70271 1 + 14508 15932 9464 9467 14587 14587 -0.0596016143909992 FAKHGAPF 8 Unmodified _FAKHGAPF_ 0 0 0 REV__ENST00000369604.5_1_1:114301878-114302094:-|nuORF REV__ENST00000369604.5_1_1:114301878-114302094:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21636962890625 2 437.732138 873.449723 0.29732 0.00013015 -0.35509 -0.00015543 -0.057764 -2.5285E-05 437.73193917774194 83.831 0.8449 83.831 83.398 84.243 0 40 23 2 0 0 0 0.97173 1 16345 16345 18.135 18.135 1 3313700 + 14509 20963 9465 9468 14588 14588 0.007935677627074256 FAKHGAPF 8 Unmodified _FAKHGAPF_ 0 0 0 REV__ENST00000369604.5_1_1:114301878-114302094:-|nuORF REV__ENST00000369604.5_1_1:114301878-114302094:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.228515625 2 437.732138 873.449723 0.26307 0.00011515 -0.27783 -0.00012162 -0.014763 -6.4621E-06 437.7318993458758 87.139 0.94996 83.189 82.79 83.74 -3.9503 51 26 3 0 0 0 0.99494 1 16591 16591 13.508 13.508 1 2380700 + 14510 20963 9465 9468 14589 14589 0.007935677627074256 FAKHGAPF 8 Unmodified _FAKHGAPF_ 0 0 0 REV__ENST00000369604.5_1_1:114301878-114302094:-|nuORF REV__ENST00000369604.5_1_1:114301878-114302094:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21673583984375 2 437.732138 873.449723 -0.052169 -2.2836E-05 0.049206 2.1539E-05 -0.0029634 -1.2972E-06 437.7320615317715 87.056 0.87741 83.327 82.835 83.713 -3.7289 49 24 3 0 0 0 0.99494 1 16643 16643 13.508 5.5977 1 3176100 + 14511 20963 9465 9468 14590 14590 0.007935677627074256 FAKNFEKG 8 Unmodified _FAKNFEKG_ 0 0 0 REV__ENST00000522070.1_1_8:91075288-91075656:-|nuORF REV__ENST00000522070.1_1_8:91075288-91075656:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.16815185546875 3 314.167749 939.481417 NaN NaN NaN NaN NaN NaN NaN 81.656 1 81.656 81.156 82.156 0 0 0 0 0.21486 1 15905 15905 1.6526 0 1 + 14512 14914 9466 9469 14591 14591 0.009255157259985936 FALGLQWK 8 Unmodified _FALGLQWK_ 0 0 0 REV__nc|ENSG00000036565|P54219-2|SLC18A1 REV__nc|ENSG00000036565|P54219-2|SLC18A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7774658203125 2 481.776545 961.538538 0.021333 1.0278E-05 1.0726 0.00051674 1.0939 0.00052702 481.7769687252516 32.183 0.38455 32.183 31.978 32.363 0 14 10 2 0 0 0 8448 1 5867 5867 0.68139 0.6174 1 947030 + 14513 14033 9467 9470 14592 14592 0.056229830023767136 FALGLQWK 8 Unmodified _FALGLQWK_ 0 0 0 REV__nc|ENSG00000036565|P54219-2|SLC18A1 REV__nc|ENSG00000036565|P54219-2|SLC18A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7768249511719 2 481.776545 961.538538 -0.12703 -6.1198E-05 1.1236 0.00054131 0.99654 0.00048011 481.77694296025123 34.561 0.27568 32.244 32.083 32.359 -2.3175 12 7 2 0 0 0 8448 1 6337 6337 0.25148 0 1 1048000 + 14514 14033 9467 9470 14593 14593 0.056229830023767136 FALHENKGQ 9 Unmodified _FALHENKGQ_ 0 0 0 REV__ENST00000568805.5_1_16:20809048-20811281:-|nuORF REV__ENST00000568805.5_1_16:20809048-20811281:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2667846679688 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 21.323 1 19.602 19.102 20.102 -1.7211 0 0 0 0.23508 1 3328 3328 7.9102 0.62092 1 + 14515 19272 9468 9471 14594 14594 3.401640651645721E-05 FALTHQRG 8 Unmodified _FALTHQRG_ 0 0 0 REV__ENSG00000138641|ENST00000402738|HERC3 REV__ENSG00000138641|ENST00000402738|HERC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2497863769531 2 465.251226 928.487899 NaN NaN NaN NaN NaN NaN NaN 84.772 1 81.06 80.56 81.56 -3.7117 0 0 0 0.21039 1 16192 16192 16.942 5.302 1 + 14516 16469 9469 9472 14595 14595 0.020794536773905747 FAMSTLKRNLE 11 Unmodified _FAMSTLKRNLE_ 0 0 0 REV__ENST00000520713.5_1_8:101563216-101563492:-|nuORF REV__ENST00000520713.5_1_8:101563216-101563492:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.236083984375 3 437.235945 1308.68601 NaN NaN NaN NaN NaN NaN NaN 63.999 1 63.999 63.499 64.499 0 0 0 0 0.17731 1 12314 12314 23.964 3.3832 1 + 14517 22640 9470 9473 14596 14596 0.044010867542056076 FAMSTLKRNLE 11 Unmodified _FAMSTLKRNLE_ 0 0 0 REV__ENST00000520713.5_1_8:101563216-101563492:-|nuORF REV__ENST00000520713.5_1_8:101563216-101563492:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21759033203125 3 437.235945 1308.68601 NaN NaN NaN NaN NaN NaN NaN 67.409 1 64.082 63.582 64.582 -3.3268 0 0 0 0.22578 1 12709 12709 11.631 5.0079 1 + 14518 22640 9470 9473 14597 14597 0.044010867542056076 FANWTLVVKS 10 Unmodified _FANWTLVVKS_ 0 0 0 MXRA5|p.G2204W|1|0.44|ENSG00000101825|chrX:3311593-3311593|C/A|missense_variant MXRA5|p.G2204W|1|0.44|ENSG00000101825|chrX:3311593-3311593|C/A|missense_variant MXRA5|p.G2204W|1|0.44|ENSG00000101825|chrX:3311593-3311593|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 388.872802734375 3 388.885241 1163.63389 NaN NaN NaN NaN NaN NaN NaN 15.204 1 13.937 13.437 14.437 -1.2661 0 0 0 2.8426 1 2078 2078 1.9064 0 1 14519 12177 9471 9474 14598 14598 0.058622914027409934 FAPGPRGL 8 Unmodified _FAPGPRGL_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 407.73046875 2 407.732138 813.449723 NaN NaN NaN NaN NaN NaN NaN 143.27 1 138.24 137.74 138.74 -5.0261 0 0 0 0.23294 1 27622 27622 0.25148 0.12861 1 14520 6702 9472 9475 14599 14599 0.0355356776269673 FAQSHDGL 8 Unmodified _FAQSHDGL_ 0 0 0 REV__ENSG00000128731|ENST00000261609|HERC2 REV__ENSG00000128731|ENST00000261609|HERC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2315368652344 2 437.706317 873.398081 -0.38363 -0.00016792 0.97196 0.00042543 0.58833 0.00025752 437.706543908066 40.118 0.28087 37.496 37.275 37.556 -2.6214 11 7 2 0 0 0 0.93477 1 7437 7437 18.135 0 1 328390 + 14521 15934 9473 9476 14600 14600 -0.04368220721846683 FASMKYNHQIA 11 Unmodified _FASMKYNHQIA_ 0 0 0 REV__ENST00000417846.2_1_6:116432031-116439170:+|nuORF REV__ENST00000417846.2_1_6:116432031-116439170:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2160949707031 3 437.216774 1308.62849 NaN NaN NaN NaN NaN NaN NaN 64.525 1 61.258 60.758 61.758 -3.2671 0 0 0 0.23103 1 12115 12115 7.4771 1.2852 1 + 14522 18606 9474 9477 14601 14601 -0.013477554513656287 FATECSWD 8 Unmodified _FATECSWD_ 0 0 0 nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant;nc|ENSG00000088812|O75882-3|ATRN;ATRNL1|p.F192Lfs*8|3|0.32|ENSG00000107518|chr10:115127671-115127671|T/-|frameshift_variant;nc|ENSG00000107518|Q5VV63-2|ATRNL1;ATRNL1|p.S600Lfs*32|1|0.15|ENSG00000107518|chr10:115266819-115266819|T/-|frameshift_variant;ENSG00000107518|ENST00000355044|ATRNL1 nc|ENSG00000088812|O75882-2|ATRN nc|ENSG00000088812|O75882-2|ATRN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.1241455078125 3 320.125221 957.353833 NaN NaN NaN NaN NaN NaN NaN 133.05 1 128.41 127.91 128.91 -4.6399 0 0 0 0.21486 1 26230 26230 1.4819 0.41044 1 14523 1734 9475 9478 14602 14602 -0.12654992930356457 FATINYSL 8 Unmodified _FATINYSL_ 0 0 0 REV__MFRP|p.T481I|1|0.36|ENSG00000235718|chr11:119341930-119341930|G/A|missense_variant REV__MFRP|p.T481I|1|0.36|ENSG00000235718|chr11:119341930-119341930|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 121.65 1 117.12 116.62 117.62 -4.5305 0 0 0 0.23664 1 23421 23421 0.62683 0 1 + 14524 23850 9476 9479 14603 14603 0.003546936318684857 FAVFGLQVY 9 Unmodified _FAVFGLQVY_ 0 0 0 SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant;ENSG00000061656|ENST00000374273|SPAG4 SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.27197265625 2 522.28166 1042.54877 NaN NaN NaN NaN NaN NaN NaN 70.573 1 67.324 66.824 67.824 -3.2492 0 0 0 0.19638 1 13734 13734 2.6312 2.5084 1 14525 1317 9477 9480 14604 14604 0.02919545936947543 FAVFGLQVY 9 Unmodified _FAVFGLQVY_ 0 0 0 SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant;ENSG00000061656|ENST00000374273|SPAG4 SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2733154296875 2 522.28166 1042.54877 NaN NaN NaN NaN NaN NaN NaN 53.514 1 50.426 49.926 50.926 -3.0876 0 0 0 0.19684 1 9852 9852 1.2148 0 1 14526 1317 9477 9480 14605 14605 0.02919545936947543 FAWLRRSL 8 Unmodified _FAWLRRSL_ 0 0 0 ENST00000492296.1_1_9:130690342-130693031:-|nuORF;ENST00000490773.5_1_9:130687427-130690958:-|nuORF;ENST00000498783.5_1_9:130687427-130690958:-|nuORF;ENSG00000167103|ENST00000388747|PIP5KL1 ENST00000492296.1_1_9:130690342-130693031:-|nuORF ENST00000492296.1_1_9:130690342-130693031:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 350.5065002441406 3 350.206538 1047.59778 NaN NaN NaN NaN NaN NaN NaN 77.011 1 77.011 76.511 77.511 0 0 0 0 0.23182 1 14968 14968 0.25148 0 1 14527 5782 9478 9481 14606 14606 0.07588879016566352 FAYNLREHAVY 11 Unmodified _FAYNLREHAVY_ 0 0 0 REV__TWIST2|p.S142N|1|0.27|ENSG00000233608|chr2:238848640-238848640|G/A|missense_variant REV__TWIST2|p.S142N|1|0.27|ENSG00000233608|chr2:238848640-238848640|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5281677246094 3 461.566571 1381.67788 NaN NaN NaN NaN NaN NaN NaN 33.903 1 31.688 31.188 32.188 -2.2158 0 0 0 0.22632 1 5925 5925 2.732 0 1 + 14528 25506 9479 9482 14607 14607 0.002312758291054706 FCCCCCFC 8 Unmodified _FCCCCCFC_ 0 0 0 ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G;REV__ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.04705810546875 3 311.074776 930.202499 NaN NaN NaN NaN NaN NaN NaN 127.53 0.99999 122.83 122.33 123.33 -4.6998 0 0 0 0.21486 1 24532 24532 0 0 1 14529 5463;17613 9480 9483 14608 14608 -0.2653937642173787 FCCCCCFC 8 Unmodified _FCCCCCFC_ 0 0 0 ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G;REV__ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.0469055175781 3 311.074776 930.202499 NaN NaN NaN NaN NaN NaN NaN 127.91 1 123.21 122.71 123.71 -4.6998 0 0 0 0.21486 1 24610 24610 0 0 1 14530 5463;17613 9480 9483 14609 14609 -0.2653937642173787 FCCCCCFC 8 Unmodified _FCCCCCFC_ 0 0 0 ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G;REV__ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.0772399902344 3 311.074776 930.202499 NaN NaN NaN NaN NaN NaN NaN 128.69 1 123.95 123.45 124.45 -4.7408 0 0 0 0.21486 1 24764 24764 0 0 1 14531 5463;17613 9480 9483 14610 14610 -0.2653937642173787 FCCCCCFC 8 Unmodified _FCCCCCFC_ 0 0 0 ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G;REV__ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.0780334472656 3 311.074776 930.202499 NaN NaN NaN NaN NaN NaN NaN 129.45 1 124.71 124.21 125.21 -4.7408 0 0 0 0.21486 1 24911 24911 0 0 1 14532 5463;17613 9480 9483 14611 14611 -0.2653937642173787 FCCCGSCC 8 Unmodified _FCCCGSCC_ 0 0 0 ENST00000293230.9_1_17:74523460-74524138:-|nuORF ENST00000293230.9_1_17:74523460-74524138:-|nuORF ENST00000293230.9_1_17:74523460-74524138:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 413.0966796875 2 413.096473 824.178393 NaN NaN NaN NaN NaN NaN NaN 177.42 1 172.63 172.13 173.13 -4.7898 0 0 0 0.21486 1 36287 36287 0 0 1 14533 8481 9481 9484 14612 14612 -0.24072893583752375 FCCCGSCC 8 Unmodified _FCCCGSCC_ 0 0 0 ENST00000293230.9_1_17:74523460-74524138:-|nuORF ENST00000293230.9_1_17:74523460-74524138:-|nuORF ENST00000293230.9_1_17:74523460-74524138:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 413.0981750488281 2 413.096473 824.178393 NaN NaN NaN NaN NaN NaN NaN 174.67 1 169.78 169.28 170.28 -4.8845 0 0 0 0.21486 1 34707 34707 0 0 1 14534 8481 9481 9484 14613 14613 -0.24072893583752375 FCCDCQTQV 9 Unmodified _FCCDCQTQV_ 0 0 0 REV__nc|ENSG00000136051|Q2M389-2|WASHC4 REV__nc|ENSG00000136051|Q2M389-2|WASHC4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6871948242188 2 523.690638 1045.36672 NaN NaN NaN NaN NaN NaN NaN 155.09 1 150.31 149.81 150.81 -4.7791 0 0 0 0.19679 1 30831 30831 0.40827 0.10123 1 + 14535 16310 9482 9485 14614 14614 -0.1541462113414127 FCFSLDLNRE 10 Unmodified _FCFSLDLNRE_ 0 0 0 ENST00000423462.6_1_10:16554086-16554215:+|nuORF ENST00000423462.6_1_10:16554086-16554215:+|nuORF ENST00000423462.6_1_10:16554086-16554215:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7743530273438 2 622.29243 1242.57031 1.0319 0.00064212 -4.0635 -0.0025287 -3.0317 -0.0018866 622.2915209263455 143.53 0.2818 138.88 138.68 138.96 -4.656 10 7 2 0 0 0 0.51405 1 28392 28392 3.8763 3.8125 1 3386400 14536 9689 9483 9486 14615 14615 -0.04127437096644826 FCGCGCGC 8 Unmodified _FCGCGCGC_ 0 0 0 KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21405029296875 2 375.09733 748.180108 NaN NaN NaN NaN NaN NaN NaN 178.67 1 173.8 173.3 174.3 -4.8686 0 0 0 0.2396 1 35572 35572 0 0 1 14537 12015 9484 9487 14616 14616 -0.20405516503490162 FCGCGCGC 8 Unmodified _FCGCGCGC_ 0 0 0 KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21405029296875 2 375.09733 748.180108 NaN NaN NaN NaN NaN NaN NaN 178.68 1 173.82 173.32 174.32 -4.8686 0 0 0 0.21486 1 35576 35576 0 0 1 14538 12015 9484 9487 14617 14617 -0.20405516503490162 FCGCGCGC 8 Unmodified _FCGCGCGC_ 0 0 0 KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2134704589844 2 375.09733 748.180108 NaN NaN NaN NaN NaN NaN NaN 67.323 1 63.996 63.496 64.496 -3.3268 0 0 0 0.2396 1 12691 12691 0 0 1 14539 12015 9484 9487 14618 14618 -0.20405516503490162 FCGCGCGC 8 Unmodified _FCGCGCGC_ 0 0 0 KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant KRTAP6-2|p.Y54C|1|0.17|ENSG00000186930|chr21:30598714-30598714|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2134704589844 2 375.09733 748.180108 NaN NaN NaN NaN NaN NaN NaN 67.341 1 64.014 63.514 64.514 -3.3268 0 0 0 0.21486 1 12695 12695 0 0 1 14540 12015 9484 9487 14619 14619 -0.20405516503490162 FCIKRALDL 9 Unmodified _FCIKRALDL_ 0 0 0 UQCRB|p.R62C|1|0.07|ENSG00000156467|chr8:96231848-96231848|G/A|missense_variant UQCRB|p.R62C|1|0.07|ENSG00000156467|chr8:96231848-96231848|G/A|missense_variant UQCRB|p.R62C|1|0.07|ENSG00000156467|chr8:96231848-96231848|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20684814453125 3 360.207438 1077.60049 NaN NaN NaN NaN NaN NaN NaN 118.32 1 113.82 113.32 114.32 -4.502 0 0 0 0.19682 1 23330 23330 1.2148 0 1 14541 26556 9485 9488 14620 14620 0.06478966359190963 FCIKRALDL 9 Unmodified _FCIKRALDL_ 0 0 0 UQCRB|p.R62C|1|0.07|ENSG00000156467|chr8:96231848-96231848|G/A|missense_variant UQCRB|p.R62C|1|0.07|ENSG00000156467|chr8:96231848-96231848|G/A|missense_variant UQCRB|p.R62C|1|0.07|ENSG00000156467|chr8:96231848-96231848|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2011413574219 3 360.207438 1077.60049 NaN NaN NaN NaN NaN NaN NaN 118.16 1 113.75 113.25 114.25 -4.4088 0 0 0 0.23508 1 22740 22740 4.897 0 1 14542 26556 9485 9488 14621 14621 0.06478966359190963 FCIKRALDL 9 Unmodified _FCIKRALDL_ 0 0 0 UQCRB|p.R62C|1|0.07|ENSG00000156467|chr8:96231848-96231848|G/A|missense_variant UQCRB|p.R62C|1|0.07|ENSG00000156467|chr8:96231848-96231848|G/A|missense_variant UQCRB|p.R62C|1|0.07|ENSG00000156467|chr8:96231848-96231848|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2066955566406 3 360.207438 1077.60049 NaN NaN NaN NaN NaN NaN NaN 118.34 1 113.93 113.43 114.43 -4.4088 0 0 0 0.23508 1 22771 22771 4.897 0 1 14543 26556 9485 9488 14622 14622 0.06478966359190963 FCITLIKEKWL 11 Unmodified _FCITLIKEKWL_ 0 0 0 ENST00000483617.5_2_2:131126744-131127839:+|nuORF;PTPN18|p.H302Pfs*51|1|0.35|ENSG00000072135|chr2:130370939-130370940|-/C|frameshift_variant;nc|ENSG00000072135|Q99952-2|PTPN18;ENSG00000072135|ENST00000175756|PTPN18 ENST00000483617.5_2_2:131126744-131127839:+|nuORF ENST00000483617.5_2_2:131126744-131127839:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2483215332031 3 465.268586 1392.78393 NaN NaN NaN NaN NaN NaN NaN 90.435 1 90.435 89.935 90.935 0 0 0 0 0.22632 1 17664 17664 0.00056442 0 1 14544 1460 9486 9489 14623 14623 0.10324895350186125 FCITLIKEKWL 11 Unmodified _FCITLIKEKWL_ 0 0 0 ENST00000483617.5_2_2:131126744-131127839:+|nuORF;PTPN18|p.H302Pfs*51|1|0.35|ENSG00000072135|chr2:130370939-130370940|-/C|frameshift_variant;nc|ENSG00000072135|Q99952-2|PTPN18;ENSG00000072135|ENST00000175756|PTPN18 ENST00000483617.5_2_2:131126744-131127839:+|nuORF ENST00000483617.5_2_2:131126744-131127839:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.242919921875 3 465.268586 1392.78393 NaN NaN NaN NaN NaN NaN NaN 81.599 1 77.76 77.26 78.26 -3.8392 0 0 0 0.22632 1 15494 15494 0.00056442 0 1 14545 1460 9486 9489 14624 14624 0.10324895350186125 FCLCCRAWS 9 Unmodified _FCLCCRAWS_ 0 0 0 REV__ENST00000255977.6_2_7:140154384-140154462:-|nuORF REV__ENST00000255977.6_2_7:140154384-140154462:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 363.4886474609375 3 363.487331 1087.44016 NaN NaN NaN NaN NaN NaN NaN 47.186 1 44.236 43.736 44.736 -2.9499 0 0 0 0.19632 1 8609 8609 0.073264 0.059998 1 + 14546 20131 9487 9490 14625 14625 -0.1000602790099947 FCLDADVFVL 10 Unmodified _FCLDADVFVL_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;MFN1|p.H221Tfs*3|1|0.27|ENSG00000171109|chr3:179365127-179365127|T/-|frameshift_variant;nc|ENSG00000171109|Q8IWA4-2|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1;ENSG00000171109|ENST00000471841|MFN1 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2109375 3 381.191454 1140.55253 NaN NaN NaN NaN NaN NaN NaN 88.061 1 88.061 87.561 88.561 0 0 0 0 2.8426 1 17185 17185 1.9064 0 1 14547 2941 9488 9491 14626 14626 -0.012121523515133958 FCLSTFWY 8 Unmodified _FCLSTFWY_ 0 0 0 ENST00000421112.1_1_2:13142712-13143995:-|nuORF;ENST00000414661.1_1_2:13143779-13143995:-|nuORF ENST00000421112.1_1_2:13142712-13143995:-|nuORF ENST00000421112.1_1_2:13142712-13143995:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27294921875 2 533.738771 1065.46299 -0.05554 -2.9644E-05 -0.15222 -8.1248E-05 -0.20776 -0.00011089 533.7383344464844 50.427 0.181 47.546 47.463 47.644 -2.8811 5 4 2 0 0 0 0.89646 1 9565 9565 0.62683 0 1 416540 14548 9606 9489 9492 14627 14627 -0.06712362240227776 FCMMTEAE 8 Unmodified _FCMMTEAE_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23760986328125 2 481.176832 960.339111 -0.016423 -7.9025E-06 1.4091 0.000678 1.3926 0.0006701 481.1777745251914 43.505 0.14694 40.739 40.611 40.758 -2.7661 5 3 2 0 0 0 1.0147 1 7856 7856 0.6015 0 1 509040 14549 4041 9490 9493 14628 14628 -0.14264524394354794 FCPGWRAM 8 Unmodified _FCPGWRAM_ 0 0 0 ENST00000487084.1_1_7:105550697-105550985:+|nuORF ENST00000487084.1_1_7:105550697-105550985:+|nuORF ENST00000487084.1_1_7:105550697-105550985:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.14923095703125 3 323.147414 966.420413 NaN NaN NaN NaN NaN NaN NaN 99.658 1 95.702 95.202 96.202 -3.9564 0 0 0 0.21486 1 19138 19138 0.45834 0 1 14550 10464 9491 9494 14629 14629 -0.06414035849445554 FCQNEFMYY 9 Unmodified _FCQNEFMYY_ 0 0 0 SMYD1|p.R452C|1|0.2|ENSG00000115593|chr2:88110393-88110393|C/T|missense_variant SMYD1|p.R452C|1|0.2|ENSG00000115593|chr2:88110393-88110393|C/T|missense_variant SMYD1|p.R452C|1|0.2|ENSG00000115593|chr2:88110393-88110393|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7625732421875 2 622.741185 1243.46782 NaN NaN NaN NaN NaN NaN NaN 76.096 1 72.373 71.873 72.873 -3.7227 0 0 0 0.19634 1 14403 14403 0.40827 0.335 1 14551 25701 9492 9495 14630 14630 -0.14417846159767578 FCQNEFMYY 9 Unmodified _FCQNEFMYY_ 0 0 0 SMYD1|p.R452C|1|0.2|ENSG00000115593|chr2:88110393-88110393|C/T|missense_variant SMYD1|p.R452C|1|0.2|ENSG00000115593|chr2:88110393-88110393|C/T|missense_variant SMYD1|p.R452C|1|0.2|ENSG00000115593|chr2:88110393-88110393|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7626953125 2 622.741185 1243.46782 NaN NaN NaN NaN NaN NaN NaN 80.938 1 77.099 76.599 77.599 -3.8392 0 0 0 0.19634 1 15366 15366 0.073264 0.073264 1 14552 25701 9492 9495 14631 14631 -0.14417846159767578 FCQNEFMYY 9 Unmodified _FCQNEFMYY_ 0 0 0 SMYD1|p.R452C|1|0.2|ENSG00000115593|chr2:88110393-88110393|C/T|missense_variant SMYD1|p.R452C|1|0.2|ENSG00000115593|chr2:88110393-88110393|C/T|missense_variant SMYD1|p.R452C|1|0.2|ENSG00000115593|chr2:88110393-88110393|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7713623046875 2 622.741185 1243.46782 NaN NaN NaN NaN NaN NaN NaN 71.723 1 68.185 67.685 68.685 -3.5385 0 0 0 0.1963 1 13599 13599 0.0033805 0.0019993 1 14553 25701 9492 9495 14632 14632 -0.14417846159767578 FCRHHWKLQFY 11 Unmodified _FCRHHWKLQFY_ 0 0 0 REV__ENST00000423620.6_1_8:95718261-95718693:+|nuORF REV__ENST00000423620.6_1_8:95718261-95718693:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.270751953125 3 522.259196 1563.75576 NaN NaN NaN NaN NaN NaN NaN 141.48 1 136.61 136.11 137.11 -4.8678 0 0 0 0.22632 1 27302 27302 0.58532 0.079364 1 + 14554 21536 9493 9496 14633 14633 -0.0035698978651907964 FCSQDDDEDM 10 Unmodified _FCSQDDDEDM_ 0 0 0 REV__ZZZ3|p.R762Q|2|0.37|ENSG00000036549|chr1:77576114-77576114|C/T|missense_variant REV__ZZZ3|p.R762Q|2|0.37|ENSG00000036549|chr1:77576114-77576114|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 402.1321716308594 3 402.130483 1203.36962 NaN NaN NaN NaN NaN NaN NaN 82.875 1 82.875 82.375 83.375 0 0 0 0 2.8426 1 16155 16155 3.8763 0 1 + 14555 25603 9494 9497 14634 14634 -0.22393119266280337 FCSSQFYHPQ 10 Unmodified _FCSSQFYHPQ_ 0 0 0 REV__ENST00000367763.7_2_1:170508440-170511675:+|nuORF REV__ENST00000367763.7_2_1:170508440-170511675:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7677001953125 2 622.263673 1242.51279 0.91103 0.0005669 0.50402 0.00031363 1.415 0.00088053 622.7672211493754 59.006 0.46417 56.095 55.784 56.248 -2.9105 24 12 3 0 0 0 0.38778 1 11344 11344 0.84494 0.25962 1 1534300 + 14556 20929 9495 9498 14635 14635 -0.09876279302193325 FCTMHFYYY 9 Unmodified _FCTMHFYYY_ 0 0 0 ENST00000277415.15_1_9:137989658-137989826:+|nuORF ENST00000277415.15_1_9:137989658-137989826:+|nuORF ENST00000277415.15_1_9:137989658-137989826:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24237060546875 3 425.505156 1273.49364 -0.14284 -6.078E-05 -0.27734 -0.00011801 -0.42018 -0.00017879 425.5050039244879 87.112 0.77219 83.383 83.048 83.82 -3.7289 56 21 4 0 0 0 0.65202 1 16599 16599 0.96228 0.96228 1 5304400 14557 8430 9496 9499 14636 14636 -0.1321695191747949 FCTMHFYYY 9 Unmodified _FCTMHFYYY_ 0 0 0 ENST00000277415.15_1_9:137989658-137989826:+|nuORF ENST00000277415.15_1_9:137989658-137989826:+|nuORF ENST00000277415.15_1_9:137989658-137989826:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 425.505156 1273.49364 -0.22003 -9.3623E-05 -0.033059 -1.4067E-05 -0.25309 -0.00010769 425.5050583964175 87.257 0.63963 83.53 83.22 83.86 -3.727 0.077814 0.00042857 NaN 0.96228 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4893500 14558 8430 9496 9499 -0.1321695191747949 FCVKQVPV 8 Unmodified _FCVKQVPV_ 0 0 0 REV__ENST00000509333.5_1_4:95376439-95494553:+|nuORF REV__ENST00000509333.5_1_4:95376439-95494553:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.1741027832031 3 307.173846 918.499709 NaN NaN NaN NaN NaN NaN NaN 91.394 1 91.394 90.894 91.894 0 0 0 0 0.21486 1 17859 17859 0.45834 0 1 + 14559 22526 9497 9500 14637 14637 0.0371993437635183 FCVMLFTT 8 Unmodified _FCVMLFTT_ 0 0 0 REV__ENSG00000164038|ENST00000394785|SLC9B2 REV__ENSG00000164038|ENST00000394785|SLC9B2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23138427734375 2 481.229725 960.444896 NaN NaN NaN NaN NaN NaN NaN 179.24 1 174.45 173.95 174.95 -4.7898 0 0 0 0.21486 1 36675 36675 0.69038 0 1 + 14560 17638 9498 9501 14638 14638 -0.0369082048657674 FCWPRKVK 8 Unmodified _FCWPRKVK_ 0 0 0 nc|ENSG00000153132|O14967-2|CLGN;CLGN|p.H500Tfs*2|1|0.22|ENSG00000153132|chr4:140392372-140392373|-/T|frameshift_variant;ENSG00000153132|ENST00000325617|CLGN nc|ENSG00000153132|O14967-2|CLGN nc|ENSG00000153132|O14967-2|CLGN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2696533203125 2 532.297122 1062.57969 0.19708 0.00010491 1.4722 0.00078364 1.6693 0.00088855 532.2978169255906 60.153 0.46154 56.93 56.709 57.171 -3.2237 22 12 3 0 0 0 8448 1 11241 11241 0.25148 0 1 1332400 14561 577 9499 9502 14639 14639 0.050904207701933046 FCYIFWKRYRF 11 Unmodified _FCYIFWKRYRF_ 0 0 0 ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5 ENSG00000249715|ENST00000624922|FER1L5 ENSG00000249715|ENST00000624922|FER1L5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.782958984375 3 543.611346 1627.81221 NaN NaN NaN NaN NaN NaN NaN 109.01 1 104.63 104.13 105.13 -4.3776 0 0 0 0.22632 1 21482 21482 1.4551 0.94916 1 14562 7899 9500 9503 14640 14640 0.023416380501203093 FDCNSCRL 8 Unmodified _FDCNSCRL_ 0 0 0 ENST00000396706.2_1_7:6617265-6618180:+|nuORF ENST00000396706.2_1_7:6617265-6618180:+|nuORF ENST00000396706.2_1_7:6617265-6618180:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.740966796875 2 479.199487 956.384421 NaN NaN NaN NaN NaN NaN NaN 123.14 1 118.41 117.91 118.91 -4.731 0 0 0 0.21323 1 23655 23655 14.582 5.2343 1 14563 9451 9501 9504 14641 14641 -0.09551537816957989 FDCWHPDN 8 Unmodified _FDCWHPDN_ 0 0 0 REV__ENST00000432137.1_1_9:15527225-15527390:-|nuORF REV__ENST00000432137.1_1_9:15527225-15527390:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.1654968261719 3 345.132598 1032.37597 NaN NaN NaN NaN NaN NaN NaN 54.702 1 51.566 51.066 52.066 -3.1352 0 0 0 0.23369 1 10100 10100 0.25148 0 1 + 14564 21630 9502 9505 14642 14642 -0.1389276846193752 FDDCRYSG 8 Unmodified _FDDCRYSG_ 0 0 0 REV__nc|ENSG00000140455|Q9Y6I4-2|USP3 REV__nc|ENSG00000140455|Q9Y6I4-2|USP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.771240234375 2 481.687267 961.359981 0.24353 0.00011731 0.80119 0.00038592 1.0447 0.00050323 481.6874417233178 93.915 0.65305 89.772 89.413 90.066 -4.1435 35 18 3 0 0 0 8448 1 17840 17840 0.12286 0 1 2856300 + 14565 24071 9503 9506 14643 14643 -0.12224474698837184 FDDEYDAEEK 10 Unmodified _FDDEYDAEEK_ 0 0 0 REV__DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant REV__DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7487182617188 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 9.6957 1 8.6021 8.1021 9.1021 -1.0936 0 0 0 0.22588 1 1052 1052 0 0 1 + 14566 13682 9504 9507 14644 14644 -0.13636984557251708 FDDGDCCD 8 Unmodified _FDDGDCCD_ 0 0 0 ENSG00000116183|ENST00000367662|PAPPA2;nc|ENSG00000116183|Q9BXP8-2|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 890.7025146484375 1 889.23386 888.226583 0.38002 0.00033793 -1.647 -0.0014646 -1.267 -0.0011266 889.2331340124526 7.1255 1.2884 7.1255 6.2974 7.5858 0 54 35 2 0 0 0 8448 1 533 533 0 0 1 633400 14567 2913 9505 9508 14645 14645 -0.2220008186685618 FDDGDCCD 8 Unmodified _FDDGDCCD_ 0 0 0 ENSG00000116183|ENST00000367662|PAPPA2;nc|ENSG00000116183|Q9BXP8-2|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 888.7373046875 1 889.23386 888.226583 -0.43926 -0.0003906 -0.98821 -0.00087875 -1.4275 -0.0012693 889.2338080742686 9.2381 1.1543 8.1737 7.9121 9.0664 -1.0645 46 32 2 0 0 0 0.9003 1 1079 1079 0 0 1 906580 14568 2913 9505 9508 14646 14646 -0.2220008186685618 FDEDDDDE 8 Unmodified _FDEDDDDE_ 0 0 0 sp|P16767|UL36_HCMVAUncharacterizedproteinUL36OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL36PE=3SV=1;sp|F5HAY6|VICA_HCMVMViralinhibitorofcaspase-8-inducedapoptosisOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL36PE=1SV=1 REV__ENST00000412580.1_1_2:122466160-122466664:-|nuORF REV__ENST00000412580.1_1_2:122466160-122466664:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 499.9664001464844 2 500.156716 998.29888 NaN NaN NaN NaN NaN NaN NaN 144.9 1 144.9 144.4 145.4 0 0 0 0 0.21486 1 28958 28958 0.79363 0 1 14569 21435 9506 9509 14647 14647 -0.20033752987944808 FDEDEDSDCE 10 Unmodified _FDEDEDSDCE_ 0 0 0 REV__nc|ENSG00000284874|Q99719-2|SEPTIN5 REV__nc|ENSG00000284874|Q99719-2|SEPTIN5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2862548828125 2 602.185148 1202.35574 NaN NaN NaN NaN NaN NaN NaN 158.3 1 153.51 153.01 154.01 -4.7952 0 0 0 2.8426 1 31479 31479 0.13989 0.04505 1 + 14570 24318 9507 9510 14648 14648 -0.2373407349371064 FDGFDDEN 8 Unmodified _FDGFDDEN_ 0 0 0 REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.1188049316406 3 320.119012 957.335206 NaN NaN NaN NaN NaN NaN NaN 133.82 1 129 128.5 129.5 -4.8175 0 0 0 0.21486 1 25758 25758 0.40072 0 1 + 14571 15599 9508 9511 14649 14649 -0.14516831300568356 FDGFDDEN 8 Unmodified _FDGFDDEN_ 0 0 0 REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.1189270019531 3 320.119012 957.335206 NaN NaN NaN NaN NaN NaN NaN 135.5 1 130.67 130.17 131.17 -4.8307 0 0 0 0.21486 1 26087 26087 0.40072 0 1 + 14572 15599 9508 9511 14650 14650 -0.14516831300568356 FDHLCSPLR 9 Unmodified _FDHLCSPLR_ 0 0 0 ENST00000484094.1_1_2:103414244-103431261:+|nuORF ENST00000484094.1_1_2:103414244-103431261:+|nuORF ENST00000484094.1_1_2:103414244-103431261:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 544.271240234375 2 544.271301 1086.52805 NaN NaN NaN NaN NaN NaN NaN 145.01 1 145.01 144.51 145.51 0 0 0 0 0.23508 1 28978 28978 6.7232 0.99131 1 14573 10426 9509 9512 14651 14651 -0.011753677143815366 FDIVKAARY 9 Unmodified _FDIVKAARY_ 0 0 0 nc|ENSG00000060709|O15034-2|RIMBP2;RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant;nc|ENSG00000060709|O15034|RIMBP2;ENSG00000060709|ENST00000690449|RIMBP2 nc|ENSG00000060709|O15034-2|RIMBP2 nc|ENSG00000060709|O15034-2|RIMBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2633666992188 2 541.803291 1081.59203 0.025629 1.3886E-05 -4.1065 -0.0022249 -4.0809 -0.002211 541.8010212089515 52.48 0.27677 49.597 49.413 49.689 -2.8837 12 7 2 0 0 0 0.77732 1 9976 9976 12.532 0 1 1054300 14574 1312 9510 9513 14652 14652 0.054497357142281544 FDIWKLFR 8 Unmodified _FDIWKLFR_ 0 0 0 ENSG00000125965|ENST00000374369|GDF5 ENSG00000125965|ENST00000374369|GDF5 ENSG00000125965|ENST00000374369|GDF5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 563.1829833984375 2 562.816202 1123.61785 0.069353 3.9033E-05 1.4914 0.00083937 1.5607 0.0008784 563.318150096913 142.2 0.33929 137.17 136.87 137.21 -5.0261 11 9 2 0 0 0 0.93477 1 27388 27388 12.532 5.2423 1 4000100 14575 3406 9511 9514 14653 14653 0.0609862995650019 FDIWRKKYMRW 11 Unmodified _FDIWRKKYMRW_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7896728515625 3 543.622134 1627.84457 0.15434 8.3903E-05 3.5589 0.0019347 3.7133 0.0020186 543.6250564651693 151.29 0.1017 146.06 145.97 146.07 -5.2365 4 2 2 0 0 0 0.96224 1 29321 29321 0.094841 0 1 2266900 14576 4896 9512 9515 14654 14654 0.05576425453114098 FDKLGDTQY 9 Unmodified _FDKLGDTQY_ 0 0 0 REV__SLC25A36|p.G175Dfs*26|1|0.1|ENSG00000114120|chr3:140973782-140973782|A/-|frameshift_variant REV__SLC25A36|p.G175Dfs*26|1|0.1|ENSG00000114120|chr3:140973782-140973782|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7700805664062 2 543.758746 1085.50294 NaN NaN NaN NaN NaN NaN NaN 158.96 1 153.68 153.18 154.18 -5.2748 0 0 0 0.23508 1 30853 30853 7.9102 2.6795 1 + 14577 24635 9513 9516 14655 14655 -0.03639144035946629 FDKRFLLR 8 Unmodified _FDKRFLLR_ 0 0 0 REV__ENST00000354410.9_2_15:100255113-100255293:+|nuORF REV__ENST00000354410.9_2_15:100255113-100255293:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7742309570312 2 547.827101 1093.63965 NaN NaN NaN NaN NaN NaN NaN 15.585 1 14.369 13.869 14.869 -1.2159 0 0 0 0.2396 1 2409 2409 0.0082765 0 1 + 14578 20777 9514 9517 14656 14656 0.09657434705081869 FDKRFLLR 8 Unmodified _FDKRFLLR_ 0 0 0 REV__ENST00000354410.9_2_15:100255113-100255293:+|nuORF REV__ENST00000354410.9_2_15:100255113-100255293:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.772216796875 2 547.827101 1093.63965 NaN NaN NaN NaN NaN NaN NaN 161.24 1 155.99 155.49 156.49 -5.2526 0 0 0 0.23782 1 31291 31291 0.0082765 0 1 + 14579 20777 9514 9517 14657 14657 0.09657434705081869 FDKVFVSS 8 Unmodified _FDKVFVSS_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1697082519531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 109.69 1 105.32 104.82 105.82 -4.3776 0 0 0 0.21486 1 21618 21618 1.6526 0 1 + 14580 15894 9515 9518 14658 14658 0.003546936318684857 FDKVFVSS 8 Unmodified _FDKVFVSS_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1652526855469 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 132.2 1 127.56 127.06 128.06 -4.6399 0 0 0 0.21486 1 26058 26058 1.6526 0 1 + 14581 15894 9515 9518 14659 14659 0.003546936318684857 FDKYSNLEFSY 11 Unmodified _FDKYSNLEFSY_ 0 0 0 REV__tr|U7T5I2|U7T5I2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00067PE=4SV=1 REV__tr|U7T5I2|U7T5I2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00067PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 708.7978515625 2 706.822075 1411.6296 0.97394 0.0006884 0.016823 1.1891E-05 0.99077 0.0007003 706.821985491628 167.95 0.31505 163.16 163.04 163.35 -4.7898 25 8 4 0 0 0 0.45265 1 33935 33935 1.4074 1.2354 1 311210000 + 14582 25413 9516 9519 14660 14660 -0.059752626014642374 FDLCKETT 8 Unmodified _FDLCKETT_ 0 0 0 nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7226257324219 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 173.29 1 168.41 167.91 168.91 -4.881 0 0 0 0.21486 1 34442 34442 7.9102 2.1497 1 14583 7233 9517 9520 14661 14661 -0.0474156034514408 FDLTRAIN 8 Unmodified _FDLTRAIN_ 0 0 0 REV__nc|ENSG00000070159|P26045-3|PTPN3 REV__nc|ENSG00000070159|P26045-3|PTPN3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1747131347656 3 317.174903 948.50288 NaN NaN NaN NaN NaN NaN NaN 133.91 1 133.91 133.41 134.41 0 0 0 0 0.21486 1 26498 26498 1.4819 1.0236 1 + 14584 14251 9518 9521 14662 14662 0.02656900754709568 FDLVMFSSH 9 Unmodified _FDLVMFSSH_ 0 0 0 REV__NRROS|p.A529V|1|0.36|ENSG00000174004|chr3:196661229-196661229|C/T|missense_variant REV__NRROS|p.A529V|1|0.36|ENSG00000174004|chr3:196661229-196661229|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2792358398438 2 541.75241 1081.49027 0.086094 4.6642E-05 1.0918 0.0005915 1.1779 0.00063814 541.752311374226 50.536 0.17588 47.491 47.389 47.565 -3.0453 6 4 2 0 0 0 0.74655 1 9259 9259 21.747 11.673 1 390560 + 14585 24384 9519 9522 14663 14663 -0.047218786998428186 FDPNTEENLT 10 Unmodified _FDPNTEENLT_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000178209|Q15149-7|PLEC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2613525390625 2 590.26185 1178.50915 NaN NaN NaN NaN NaN NaN NaN 61.415 1 61.415 60.915 61.915 0 0 0 0 2.8426 1 11783 11783 0.69767 0 1 14586 6567;1877 9520 9523 14664 14664 -0.072966705951103 FDPSLCLCLL 10 Unmodified _FDPSLCLCLL_ 0 0 0 REV__ENST00000399914.5_2_21:31312176-31312275:-|nuORF REV__ENST00000399914.5_2_21:31312176-31312275:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2220458984375 3 375.189056 1122.54534 NaN NaN NaN NaN NaN NaN NaN 71.622 1 68.372 67.872 68.872 -3.2492 0 0 0 0.22588 1 13949 13949 3.5871 0 1 + 14587 21348 9521 9524 14665 14665 -0.011032082235942653 FDQNLDPPTPP 11 Unmodified _FDQNLDPPTPP_ 0 0 0 REV__nc|ENSG00000177426|Q15583-4|TGIF1 REV__nc|ENSG00000177426|Q15583-4|TGIF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.768798828125 2 620.79586 1239.57717 0.60753 0.00037715 -0.33288 -0.00020665 0.27465 0.0001705 620.7956306990569 88.146 4.4847 84.15 83.732 88.216 -3.9953 307 128 5 0 0 0 0.76834 1 16803 16803 7.1017 0 1 34587000 + 14588 18556 9522 9525 14666 14666 -0.033038009444453564 FDRATKLE 8 Unmodified _FDRATKLE_ 0 0 0 ENST00000489885.1_1_17:7094029-7095081:-|nuORF;nc|ENSG00000132535|P78352-3|DLG4;ENSG00000132535|ENST00000399506|DLG4;nc|ENSG00000132535|P78352-2|DLG4 ENST00000489885.1_1_17:7094029-7095081:-|nuORF ENST00000489885.1_1_17:7094029-7095081:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26385498046875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 162.47 1 162.47 161.97 162.97 0 0 0 0 0.22692 1 32669 32669 0.12286 0 1 14589 3740 9523 9526 14667 14667 0.023328834091216777 FDRATKLE 8 Unmodified _FDRATKLE_ 0 0 0 ENST00000489885.1_1_17:7094029-7095081:-|nuORF;nc|ENSG00000132535|P78352-3|DLG4;ENSG00000132535|ENST00000399506|DLG4;nc|ENSG00000132535|P78352-2|DLG4 ENST00000489885.1_1_17:7094029-7095081:-|nuORF ENST00000489885.1_1_17:7094029-7095081:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26629638671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 90.913 1 87.053 86.553 87.553 -3.8595 0 0 0 0.22847 1 17791 17791 1.4551 1.0468 1 14590 3740 9523 9526 14668 14668 0.023328834091216777 FDRKAKCQV 9 Unmodified _FDRKAKCQV_ 0 0 0 REV__ATAD5|p.S1470Ffs*4|1|0.42|ENSG00000176208|chr17:30892750-30892751|-/T|frameshift_variant REV__ATAD5|p.S1470Ffs*4|1|0.42|ENSG00000176208|chr17:30892750-30892751|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.792724609375 2 547.792401 1093.57025 NaN NaN NaN NaN NaN NaN NaN 170.45 1 170.45 169.95 170.95 0 0 0 0 0.23277 1 35046 35046 13.906 0 1 + 14591 13138 9524 9527 14669 14669 0.02720607694004684 FDTDSNDYF 9 Unmodified _FDTDSNDYF_ 0 0 0 ENSG00000039537|ENST00000337836|C6 ENSG00000039537|ENST00000337836|C6 ENSG00000039537|ENST00000337836|C6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2163391113281 3 375.145338 1122.41418 NaN NaN NaN NaN NaN NaN NaN 139.88 1 135.03 134.53 135.53 -4.8492 0 0 0 0.19687 1 26970 26970 8.1555 7.8901 1 14592 1190 9525 9528 14670 14670 -0.142126040662788 FDTHDNGRPDS 11 Unmodified _FDTHDNGRPDS_ 0 0 0 REV__nc|ENSG00000116396|Q03721-2|KCNC4 REV__nc|ENSG00000116396|Q03721-2|KCNC4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7633056640625 2 630.765623 1259.51669 NaN NaN NaN NaN NaN NaN NaN 75.357 1 71.635 71.135 72.135 -3.7227 0 0 0 0.22632 1 14254 14254 0.58532 0.079364 1 + 14593 22299 9526 9529 14671 14671 -0.10268518274801863 FDTINVNTY 9 Unmodified _FDTINVNTY_ 0 0 0 REV__SPTBN5|p.R482Afs*7|1|0.21|ENSG00000137877|chr15:41885811-41885812|-/C|frameshift_variant REV__SPTBN5|p.R482Afs*7|1|0.21|ENSG00000137877|chr15:41885811-41885812|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7722778320312 2 543.758746 1085.50294 0.44985 0.00024461 -2.2459 -0.0012212 -1.7961 -0.00097662 543.7575355580205 100.85 0.66226 96.856 96.55 97.212 -3.9895 27 18 2 0 0 0 0.41266 1 19404 19404 24.991 2.2547 1 1320800 + 14594 16422 9527 9530 14672 14672 -0.03639144035946629 FDTTIQTRLLW 11 Unmodified _FDTTIQTRLLW_ 0 0 0 REV__ENST00000436315.2_1_9:71224362-71225004:+|nuORF REV__ENST00000436315.2_1_9:71224362-71225004:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.253662109375 3 465.253993 1392.74015 NaN NaN NaN NaN NaN NaN NaN 102.89 1 98.569 98.069 99.069 -4.3208 0 0 0 0.22632 1 19700 19700 0.03141 0.025454 1 + 14595 21669 9528 9531 14673 14673 0.05949002177408147 FDVHSVLI 8 Unmodified _FDVHSVLI_ 0 0 0 REV__OR2B2|p.Y252Mfs*34|1|0.34|ENSG00000168131|chr6:27911566-27911566|A/-|frameshift_variant REV__OR2B2|p.Y252Mfs*34|1|0.34|ENSG00000168131|chr6:27911566-27911566|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25872802734375 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 157.65 1 152.38 151.88 152.88 -5.2712 0 0 0 0.21486 1 30582 30582 5.7604 0 1 + 14596 17998 9529 9532 14674 14674 0.03470686385821864 FDVKKMLRS 9 Unmodified _FDVKKMLRS_ 0 0 0 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2154846191406 3 375.214593 1122.62195 NaN NaN NaN NaN NaN NaN NaN 156.68 1 151.39 150.89 151.89 -5.2854 0 0 0 0.23508 1 30397 30397 3.8763 0.80407 1 14597 2690 9530 9533 14675 14675 0.06554351387921997 FDVTQLRA 8 Unmodified _FDVTQLRA_ 0 0 0 REV__SERPINB11|p.R288Pfs*5|1|0.4|ENSG00000206072|chr18:63723077-63723078|-/C|frameshift_variant REV__SERPINB11|p.R288Pfs*5|1|0.4|ENSG00000206072|chr18:63723077-63723078|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1748352050781 3 317.174903 948.50288 NaN NaN NaN NaN NaN NaN NaN 142.41 1 137.38 136.88 137.88 -5.0261 0 0 0 0.21486 1 27449 27449 1.6526 0 1 + 14598 19611 9531 9534 14676 14676 0.026569007546981993 FDWLWRKTKWR 11 Unmodified _FDWLWRKTKWR_ 0 0 0 REV__COL11A1|p.P546Afs*9|1|0.23|ENSG00000060718|chr1:103008510-103008511|-/C|frameshift_variant REV__COL11A1|p.P546Afs*9|1|0.23|ENSG00000060718|chr1:103008510-103008511|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2792358398438 3 541.296527 1620.86775 NaN NaN NaN NaN NaN NaN NaN 163.67 1 158.62 158.12 159.12 -5.0446 0 0 0 0.22632 1 31863 31863 0.094841 0 1 + 14599 13473 9532 9535 14677 14677 0.08215187562086612 FDYAYGDV 8 Unmodified _FDYAYGDV_ 0 0 0 REV__tr|U7T258|U7T258_FUSNUCyclically-permutedmutarotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00557PE=4SV=1 REV__tr|U7T258|U7T258_FUSNUCyclically-permutedmutarotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00557PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1356506347656 3 317.136114 948.386513 NaN NaN NaN NaN NaN NaN NaN 140.25 1 135.27 134.77 135.77 -4.9758 0 0 0 0.21486 1 26993 26993 1.6526 0 1 + 14600 25309 9533 9536 14678 14678 -0.08974462535854855 FEALATTNSK 10 Unmodified _FEALATTNSK_ 0 0 0 REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1 REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2778930664062 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 90.753 1 86.709 86.209 87.209 -4.0443 0 0 0 2.8426 1 17288 17288 0.20733 0 1 + 14601 17535 9534 9537 14679 14679 0.008088313724329055 FEALYVPDGSF 11 Unmodified _FEALYVPDGSF_ 0 0 0 REV__ENSG00000242732|ENST00000609883|RTL5 REV__ENSG00000242732|ENST00000609883|RTL5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7777099609375 2 622.795329 1243.5761 NaN NaN NaN NaN NaN NaN NaN 70.315 1 70.315 69.815 70.815 0 0 0 0 0.22862 1 13617 13617 9.3831 2.0939 1 + 14602 19795 9535 9538 14680 14680 -0.035940153133424246 FEATRLVKV 9 Unmodified _FEATRLVKV_ 0 0 0 REV__nc|ENSG00000108852|Q14168-5|MPP2 REV__nc|ENSG00000108852|Q14168-5|MPP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2705688476562 2 531.818941 1061.62333 0.62371 0.0003317 -0.53178 -0.00028281 0.091926 4.8888E-05 531.8186341443936 91.863 1.0025 87.768 87.293 88.295 -4.0946 86 28 4 0 0 0 0.46882 1 17512 17512 21.537 1.1224 1 46890000 + 14603 15143 9536 9539 14681 14681 0.09498308748311501 FECPARPP 8 Unmodified _FECPARPP_ 0 0 0 ENST00000369563.3_1_1:114447832-114448057:+|nuORF ENST00000369563.3_1_1:114447832-114448057:+|nuORF ENST00000369563.3_1_1:114447832-114448057:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2383117675781 2 458.720913 915.427273 NaN NaN NaN NaN NaN NaN NaN 101.85 1 97.828 97.328 98.328 -4.0212 0 0 0 0.21452 1 19570 19570 13.508 3.3245 1 14604 9124 9537 9540 14682 14682 -0.03382399697227356 FEDIKSGY 8 Unmodified _FEDIKSGY_ 0 0 0 ENST00000437270.1_1_9:140535772-140535991:-|nuORF;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP ENST00000437270.1_1_9:140535772-140535991:-|nuORF ENST00000437270.1_1_9:140535772-140535991:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.233642578125 2 479.729458 957.444362 -0.050936 -2.4436E-05 -1.4736 -0.00070695 -1.5246 -0.00073138 479.728196771598 58.671 1.3208 55.761 54.963 56.284 -2.9105 133 37 5 0 0 0 0.67861 1 11287 11287 17.113 5.4726 1 18890000 14605 3071 9538 9541 14683 14683 -0.036062006104316424 FEDIKSGY 8 Unmodified _FEDIKSGY_ 0 0 0 ENST00000437270.1_1_9:140535772-140535991:-|nuORF;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP ENST00000437270.1_1_9:140535772-140535991:-|nuORF ENST00000437270.1_1_9:140535772-140535991:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2320556640625 2 479.729458 957.444362 0.072132 3.4604E-05 -1.4428 -0.00069213 -1.3706 -0.00065753 479.72801127847424 58.926 1.3174 55.721 55.026 56.343 -3.2052 120 37 4 0 0 0 0.64512 1 11017 11017 19.257 3.4098 1 13004000 14606 3071 9538 9541 14684 14684 -0.036062006104316424 FEDKPWRKPG 10 Unmodified _FEDKPWRKPG_ 0 0 0 nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1;nc|ENSG00000145216|Q6UN15-4|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;FIP1L1|p.R473Lfs*2|1|0.5|ENSG00000145216|chr4:53453051-53453052|-/T|frameshift_variant;FIP1L1|p.D472Efs*3|1|0.45|ENSG00000145216|chr4:53453049-53453050|-/G|frameshift_variant nc|ENSG00000145216|Q6UN15-3|FIP1L1 nc|ENSG00000145216|Q6UN15-3|FIP1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7772216796875 2 630.330205 1258.64586 NaN NaN NaN NaN NaN NaN NaN 86.384 1 82.657 82.157 83.157 -3.727 0 0 0 0.22588 1 16885 16885 6.7232 0.99131 1 14607 4597 9539 9542 14685 14685 0.026879081459355803 FEDLSEMDG 9 Unmodified _FEDLSEMDG_ 0 0 0 PLXNA4|p.M966Cfs*7|1|0.29|ENSG00000221866|chr7:132187572-132187572|C/-|frameshift_variant;PLXNA4|p.T1063Pfs*27|1|0.32|ENSG00000221866|chr7:132182163-132182163|C/-|frameshift_variant;PLXNA4|p.G1175Afs*3|1|0.21|ENSG00000221866|chr7:132180701-132180701|C/-|frameshift_variant;ENSG00000221866|ENST00000321063|PLXNA4 PLXNA4|p.M966Cfs*7|1|0.29|ENSG00000221866|chr7:132187572-132187572|C/-|frameshift_variant PLXNA4|p.M966Cfs*7|1|0.29|ENSG00000221866|chr7:132187572-132187572|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2694702148438 2 521.705322 1041.39609 -0.30444 -0.00015883 3.1604 0.0016488 2.856 0.00149 521.7078218601779 124.09 0.5948 119.36 119.04 119.63 -4.731 26 16 3 0 0 0 0.59016 1 23842 23842 0.37959 0 1 959840 14608 7761 9540 9543 14686 14686 -0.12295062312637128 FEDSFGFCL 9 Unmodified _FEDSFGFCL_ 0 0 0 REV__nc|ENSG00000147862|O00712-4|NFIB REV__nc|ENSG00000147862|O00712-4|NFIB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.285888671875 2 532.723318 1063.43208 -0.23302 -0.00012413 -2.3046 -0.0012277 -2.5376 -0.0013518 533.2222297785712 65.501 0.10416 65.501 65.413 65.518 0 4 2 2 0 0 0 0.8319 1 12617 12617 12.532 9.6423 1 1981100 + 14609 24089 9541 9544 14687 14687 -0.09709560345118007 FEDSKKGLY 9 Unmodified _FEDSKKGLY_ 0 0 0 REV__ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant REV__ZNF33A|p.Y580Cfs*21|1|0.05|ENSG00000189180|chr10:38055865-38055866|-/GTGTGTGTTCTCTG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7758178710938 2 543.776939 1085.53933 0.2582 0.0001404 0.15402 8.3755E-05 0.41222 0.00022416 543.7773433656185 140.03 0.7632 135.39 134.86 135.62 -4.6439 29 21 2 0 0 0 0.30056 1 27616 27616 2.8827 0 1 2265600 + 14610 19199 9542 9545 14688 14688 -2.267139211653557E-05 FEDTEYYDY 9 Unmodified _FEDTEYYDY_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000024146 REV__CON__ENSEMBL:ENSBTAP00000024146 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.76611328125 2 622.735134 1243.45571 0.094051 5.8569E-05 0.62759 0.00039082 0.72164 0.00044939 622.7357032480446 60.016 0.38811 60.016 59.821 60.209 0 21 10 3 0 0 0 0.60489 1 11498 11498 2.6312 2.6299 1 2935900 + + 14611 13508 9543 9546 14689 14689 -0.15627468097613928 FEDTEYYDY 9 Unmodified _FEDTEYYDY_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000024146 REV__CON__ENSEMBL:ENSBTAP00000024146 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7625122070312 2 622.735134 1243.45571 NaN NaN NaN NaN NaN NaN NaN 74.293 1 70.617 70.117 71.117 -3.6764 0 0 0 0.19652 1 14046 14046 0.40827 0.36448 1 + + 14612 13508 9543 9546 14690 14690 -0.15627468097613928 FEDTEYYDY 9 Unmodified _FEDTEYYDY_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000024146 REV__CON__ENSEMBL:ENSBTAP00000024146 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7592163085938 2 622.735134 1243.45571 0.45441 0.00028297 -0.43856 -0.00027311 0.015845 9.8675E-06 622.7351021936323 63.467 0.4809 60.211 59.952 60.432 -3.2567 24 13 3 0 0 0 0.64764 2 11938 11888;11938 7.9102 1.187 1 1402100 + + 14613 13508 9543 9546 14691;14692 14692 -0.15627468097613928 FEDTEYYDY 9 Unmodified _FEDTEYYDY_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000024146 REV__CON__ENSEMBL:ENSBTAP00000024146 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 622.735134 1243.45571 0.094051 5.8569E-05 0.62759 0.00039082 0.72164 0.00044939 622.7357032480446 60.016 0.38811 60.016 59.821 60.209 0 -0.097105 0.00062351 NaN 7.9102 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2935900 + + 14614 13508 9543 9546 -0.15627468097613928 FEDYSACPY 9 Unmodified _FEDYSACPY_ 0 0 0 REV__nc|ENSG00000266200|P54317|PNLIPRP2 REV__nc|ENSG00000266200|P54317|PNLIPRP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78076171875 2 547.710408 1093.40626 NaN NaN NaN NaN NaN NaN NaN 128.11 1 123.48 122.98 123.98 -4.6292 0 0 0 0.23508 1 25260 25260 4.756 0 1 + 14615 24302 9544 9547 14693 14693 -0.13670454587395398 FEEDFIEK 8 Unmodified _FEEDFIEK_ 0 0 0 SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant;SNX33|p.C435Afs*62|2|0.36|ENSG00000173548|chr15:75650395-75650395|C/-|frameshift_variant;ENSG00000173548|ENST00000308527|SNX33 SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 528.1956176757812 2 528.747847 1055.48114 0.23102 0.00012215 -0.024415 -1.2909E-05 0.20661 0.00010924 528.7477914604684 131 0.87173 126.23 125.8 126.68 -4.7725 62 24 3 0 0 0 1.0158 1 25150 25150 10.074 0 1 16978000 14616 6301 9545 9548 14694 14694 -0.04437948784516266 FEEDFIEK 8 Unmodified _FEEDFIEK_ 0 0 0 SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant;SNX33|p.C435Afs*62|2|0.36|ENSG00000173548|chr15:75650395-75650395|C/-|frameshift_variant;ENSG00000173548|ENST00000308527|SNX33 SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 528.747847 1055.48114 0.12356 6.533E-05 0.1072 5.6679E-05 0.23075 0.00012201 528.7478561158903 126.17 0.82018 126.17 125.72 126.54 0 -0.043989 -0.00014369 NaN 19.257 60 22 3 NaN NaN NaN NaN 0 NaN NaN 0 24595000 14617 6301 9545 9548 -0.04437948784516266 FEEDFIEK 8 Unmodified _FEEDFIEK_ 0 0 0 SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant;SNX33|p.C435Afs*62|2|0.36|ENSG00000173548|chr15:75650395-75650395|C/-|frameshift_variant;ENSG00000173548|ENST00000308527|SNX33 SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 528.747847 1055.48114 -0.053906 -2.8502E-05 0.28898 0.0001528 0.23507 0.00012429 528.7479440822727 130.88 0.84497 126.24 125.83 126.68 -4.6359 0.027089 4.8542E-05 NaN 19.257 71 23 4 NaN NaN NaN NaN 0 NaN NaN 0 18764000 14618 6301 9545 9548 -0.04437948784516266 FEEDFIEK 8 Unmodified _FEEDFIEK_ 0 0 0 SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant;SNX33|p.C435Afs*62|2|0.36|ENSG00000173548|chr15:75650395-75650395|C/-|frameshift_variant;ENSG00000173548|ENST00000308527|SNX33 SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 528.747847 1055.48114 0.043342 2.2917E-05 0.59526 0.00031474 0.63861 0.00033766 528.7479808990461 131.05 0.88034 126.21 125.74 126.62 -4.8355 -0.0013066 0.00037244 NaN 19.257 76 24 5 NaN NaN NaN NaN 0 NaN NaN 0 16255000 14619 6301 9545 9548 -0.04437948784516266 FEEHVQASH 9 Unmodified _FEEHVQASH_ 0 0 0 nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6 nc|ENSG00000145495|O60337-6|MARCHF6 nc|ENSG00000145495|O60337-6|MARCHF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.1622009277344 3 361.833317 1082.47812 0.33556 0.00012142 -0.53644 -0.0001941 -0.20088 -7.2686E-05 361.8330111444984 29.7 0.52828 27.583 27.14 27.668 -2.1167 17 14 2 0 0 0 0.87918 1 5285 5285 1.0715 0.10919 1 560240 14620 4609 9546 9549 14695 14695 -0.0598177911865605 FEEIQRMI 8 Unmodified _FEEIQRMI_ 0 0 0 tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1 tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1 tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2718505859375 2 533.273509 1064.53247 NaN NaN NaN NaN NaN NaN NaN 154.42 1 154.42 153.92 154.92 0 0 0 0 0.22934 1 30952 30952 3.5871 0 1 14621 25921 9547 9550 14696 14696 0.0027809670855276636 FEEKDSEFTE 10 Unmodified _FEEKDSEFTE_ 0 0 0 REV__nc|ENSG00000082126|Q96JB8-4|MPP4 REV__nc|ENSG00000082126|Q96JB8-4|MPP4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7692260742188 2 630.766965 1259.51938 NaN NaN NaN NaN NaN NaN NaN 62.151 1 58.911 58.411 59.411 -3.2395 0 0 0 2.8426 1 11649 11649 0.043787 0 1 + 14622 23956 9548 9551 14697 14697 -0.10000107660516733 FEEPQDAYVY 10 Unmodified _FEEPQDAYVY_ 0 0 0 REV__ENSG00000011198|ENST00000644371|ABHD5 REV__ENSG00000011198|ENST00000644371|ABHD5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7764892578125 2 630.774593 1259.53463 NaN NaN NaN NaN NaN NaN NaN 38.382 1 35.833 35.333 36.333 -2.5491 0 0 0 0.22588 1 7112 7112 6.2058 0.47393 1 + 14623 13930 9549 9552 14698 14698 -0.08475196072663493 FEEQFFKQT 9 Unmodified _FEEQFFKQT_ 0 0 0 nc|ENSG00000148541|Q8NE31-3|FAM13C;nc|ENSG00000148541|Q8NE31-5|FAM13C;nc|ENSG00000148541|Q8NE31-4|FAM13C;ENSG00000148541|ENST00000618804|FAM13C nc|ENSG00000148541|Q8NE31-3|FAM13C nc|ENSG00000148541|Q8NE31-3|FAM13C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2897338867188 2 602.287671 1202.56079 NaN NaN NaN NaN NaN NaN NaN 52.067 1 52.067 51.567 52.567 0 0 0 0 0.19162 1 9891 9891 2.6312 2.223 1 14624 4749 9550 9553 14699 14699 -0.03238882110531449 FEERCCFL 8 Unmodified _FEERCCFL_ 0 0 0 MAP3K5|p.A1077Lfs*6|1|0.27|ENSG00000197442|chr6:136583737-136583737|C/-|frameshift_variant;MAP3K5|p.F1132Wfs*8|1|0.09|ENSG00000197442|chr6:136583570-136583571|AA/-|frameshift_variant;ENSG00000197442|ENST00000359015|MAP3K5 MAP3K5|p.A1077Lfs*6|1|0.27|ENSG00000197442|chr6:136583737-136583737|C/-|frameshift_variant MAP3K5|p.A1077Lfs*6|1|0.27|ENSG00000197442|chr6:136583737-136583737|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6988525390625 2 523.725338 1045.43612 -0.33775 -0.00017689 -1.0413 -0.00054537 -1.3791 -0.00072225 524.2263615107988 74.014 0.55376 70.337 70.033 70.587 -3.6764 24 15 2 0 0 0 0.7545 1 13956 13956 6.3541 1.1234 1 2679500 14625 7366 9551 9554 14700 14700 -0.08477794123041349 FEEYLNLLY 9 Unmodified _FEEYLNLLY_ 0 0 0 ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2987670898438 2 602.300247 1202.58594 NaN NaN NaN NaN NaN NaN NaN 16.733 1 15.38 14.88 15.88 -1.3534 0 0 0 0.23508 1 2388 2388 2.0598 0 1 14626 7544 9552 9555 14701 14701 -0.007248273079540013 FEEYPKFRKII 11 Unmodified _FEEYPKFRKII_ 0 0 0 ENST00000513117.1_1_5:6633573-6668378:+|nuORF;ENST00000442297.1_1_X:138529664-138529832:+|nuORF;ENSG00000145545|ENST00000274192|SRD5A1 ENST00000513117.1_1_5:6633573-6668378:+|nuORF ENST00000513117.1_1_5:6633573-6668378:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2749938964844 3 490.609889 1468.80784 NaN NaN NaN NaN NaN NaN NaN 121.3 1 121.3 120.8 121.8 0 0 0 0 0.23698 1 23909 23909 2.4348 0.97967 1 14627 10760 9553 9556 14702 14702 0.09218452108234487 FEFWDSPFNS 10 Unmodified _FEFWDSPFNS_ 0 0 0 ENSG00000179407|ENST00000319153|DNAJB8 ENSG00000179407|ENST00000319153|DNAJB8 ENSG00000179407|ENST00000319153|DNAJB8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2489013671875 3 425.848744 1274.5244 -0.034225 -1.4574E-05 -0.029531 -1.2576E-05 -0.063756 -2.715E-05 425.8487154701454 75.76 0.20399 72.126 72.034 72.238 -3.6337 8 5 2 0 0 0 0.91149 1 14416 14416 3.0723 2.3746 1 490140 14628 6630 9554 9557 14703 14703 -0.10187759007226305 FEGCSGCCPAF 11 Unmodified _FEGCSGCCPAF_ 0 0 0 REV__ENST00000469300.6_1_2:128400496-128412764:-|nuORF REV__ENST00000469300.6_1_2:128400496-128412764:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 560.65234375 2 560.698463 1119.38237 NaN NaN NaN NaN NaN NaN NaN 165.28 1 160.3 159.8 160.8 -4.9811 0 0 0 0.22632 1 32288 32288 0.026206 0 1 + 14629 22008 9555 9558 14704 14704 -0.17254334617086897 FEGIDKLTR 9 Unmodified _FEGIDKLTR_ 0 0 0 REV__ENST00000595091.6_2_19:53854892-53855471:+|nuORF REV__ENST00000595091.6_2_19:53854892-53855471:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 91.283 1 87.475 86.975 87.975 -3.8083 0 0 0 0.23508 1 17474 17474 4.1895 1.1943 1 + 14630 23371 9556 9559 14705 14705 0.046171279889904326 FEHDLRGQTQE 11 Unmodified _FEHDLRGQTQE_ 0 0 0 ENST00000418132.7_1_17:38296747-38323177:+|nuORF;ENSG00000108349|ENST00000264645|CASC3 ENST00000418132.7_1_17:38296747-38323177:+|nuORF ENST00000418132.7_1_17:38296747-38323177:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7582092285156 3 453.881107 1358.62149 -0.37811 -0.00017161 0.95573 0.00043379 0.57762 0.00026217 453.88180041106517 19.214 0.17599 17.889 17.755 17.931 -1.3251 7 4 2 0 0 0 0.806 1 2908 2908 2.8433 0.21205 1 333730 14631 2467 9557 9560 14706 14706 -0.04347396798266345 FEHTIHVGF 9 Unmodified _FEHTIHVGF_ 0 0 0 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENST00000556425.2_1_15:21937379-21938108:-|nuORF;PAK2|p.S330Hfs*6|1|0.39|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;PAK2|p.S371Vfs*67|1|0.31|ENSG00000180370|chr3:196818111-196818111|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;PAK2|p.P185Rfs*14|1|0.2|ENSG00000180370|chr3:196806661-196806661|C/-|frameshift_variant;PAK1|p.N120Tfs*24|1|0.34|ENSG00000149269|chr11:77379321-77379321|T/-|frameshift_variant;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;PAK3|p.I206Sfs*56|1|0.13|ENSG00000077264|chrX:111163017-111163017|A/-|frameshift_variant;ENSG00000077264|ENST00000372007|PAK3;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77099609375 2 543.771991 1085.52943 NaN NaN NaN NaN NaN NaN NaN 98.696 1 98.696 98.196 99.196 0 0 0 0 0.079869 1 19346 19346 42.095 16.695 1 14632 12751 9558 9561 14707 14707 -0.009914103539585994 FEHTIHVGF 9 Unmodified _FEHTIHVGF_ 0 0 0 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENST00000556425.2_1_15:21937379-21938108:-|nuORF;PAK2|p.S330Hfs*6|1|0.39|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;PAK2|p.S371Vfs*67|1|0.31|ENSG00000180370|chr3:196818111-196818111|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;PAK2|p.P185Rfs*14|1|0.2|ENSG00000180370|chr3:196806661-196806661|C/-|frameshift_variant;PAK1|p.N120Tfs*24|1|0.34|ENSG00000149269|chr11:77379321-77379321|T/-|frameshift_variant;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;PAK3|p.I206Sfs*56|1|0.13|ENSG00000077264|chrX:111163017-111163017|A/-|frameshift_variant;ENSG00000077264|ENST00000372007|PAK3;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.1905212402344 3 362.85042 1085.52943 -0.30358 -0.00011015 0.45033 0.0001634 0.14675 5.3248E-05 362.85053724699407 102.68 0.46405 98.494 98.307 98.771 -4.1861 24 12 3 0 0 0 0.15889 1 20220 20220 24.882 22.25 1 2134700 14633 12751 9558 9561 14708 14708 -0.009914103539585994 FEHTIHVGF 9 Unmodified _FEHTIHVGF_ 0 0 0 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENST00000556425.2_1_15:21937379-21938108:-|nuORF;PAK2|p.S330Hfs*6|1|0.39|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;PAK2|p.S371Vfs*67|1|0.31|ENSG00000180370|chr3:196818111-196818111|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;PAK2|p.P185Rfs*14|1|0.2|ENSG00000180370|chr3:196806661-196806661|C/-|frameshift_variant;PAK1|p.N120Tfs*24|1|0.34|ENSG00000149269|chr11:77379321-77379321|T/-|frameshift_variant;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;PAK3|p.I206Sfs*56|1|0.13|ENSG00000077264|chrX:111163017-111163017|A/-|frameshift_variant;ENSG00000077264|ENST00000372007|PAK3;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 362.85042 1085.52943 -0.043951 -1.5948E-05 0.73157 0.00026545 0.68762 0.0002495 362.8505292066597 98.745 0.4838 98.745 98.506 98.99 0 0.21557 0.00030552 NaN 24.882 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1236800 14634 12751 9558 9561 -0.009914103539585994 FEHTIHVGF 9 Unmodified _FEHTIHVGF_ 0 0 0 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENST00000556425.2_1_15:21937379-21938108:-|nuORF;PAK2|p.S330Hfs*6|1|0.39|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;PAK2|p.S371Vfs*67|1|0.31|ENSG00000180370|chr3:196818111-196818111|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;PAK2|p.P185Rfs*14|1|0.2|ENSG00000180370|chr3:196806661-196806661|C/-|frameshift_variant;PAK1|p.N120Tfs*24|1|0.34|ENSG00000149269|chr11:77379321-77379321|T/-|frameshift_variant;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;PAK3|p.I206Sfs*56|1|0.13|ENSG00000077264|chrX:111163017-111163017|A/-|frameshift_variant;ENSG00000077264|ENST00000372007|PAK3;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 362.85042 1085.52943 0.27899 0.00010123 0.068632 2.4903E-05 0.34763 0.00012614 362.8502604500855 102.77 0.52032 98.449 98.185 98.706 -4.3208 -0.080165 -0.00041613 NaN 24.882 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1364700 14635 12751 9558 9561 -0.009914103539585994 FEHTIHVGF 9 Unmodified _FEHTIHVGF_ 0 0 0 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENST00000556425.2_1_15:21937379-21938108:-|nuORF;PAK2|p.S330Hfs*6|1|0.39|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;PAK2|p.S371Vfs*67|1|0.31|ENSG00000180370|chr3:196818111-196818111|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;PAK2|p.P185Rfs*14|1|0.2|ENSG00000180370|chr3:196806661-196806661|C/-|frameshift_variant;PAK1|p.N120Tfs*24|1|0.34|ENSG00000149269|chr11:77379321-77379321|T/-|frameshift_variant;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;PAK3|p.I206Sfs*56|1|0.13|ENSG00000077264|chrX:111163017-111163017|A/-|frameshift_variant;ENSG00000077264|ENST00000372007|PAK3;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 362.85042 1085.52943 -0.15659 -5.6819E-05 0.5302 0.00019238 0.37361 0.00013556 362.8504567959594 102.45 0.58334 98.429 98.15 98.733 -4.0212 -0.10018 8.6315E-05 NaN 24.882 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1346400 14636 12751 9558 9561 -0.009914103539585994 FEISDIGAK 9 Unmodified _FEISDIGAK_ 0 0 0 nc|ENSG00000100473|O43405-2|COCH;ENSG00000100473|ENST00000396618|COCH nc|ENSG00000100473|O43405-2|COCH nc|ENSG00000100473|O43405-2|COCH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25848388671875 2 490.258382 978.502212 0.085559 4.1946E-05 0.91593 0.00044904 1.0015 0.00049099 490.2587848879822 66.869 0.21404 63.76 63.685 63.899 -3.1086 7 5 2 0 0 0 0.30056 1 12967 12967 2.6312 0 1 1611400 14637 1983 9559 9562 14709 14709 0.012100613149982564 FEIWCRYY 8 Unmodified _FEIWCRYY_ 0 0 0 nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3 nc|ENSG00000168014|Q4AC94-2|C2CD3 nc|ENSG00000168014|Q4AC94-2|C2CD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2702026367188 2 590.268227 1178.5219 NaN NaN NaN NaN NaN NaN NaN 51.281 1 48.236 47.736 48.736 -3.0453 0 0 0 0.21486 1 9414 9414 5.7604 1.0044 1 14638 5868 9560 9563 14710 14710 -0.06021885945892791 FEIWCRYY 8 Unmodified _FEIWCRYY_ 0 0 0 nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3 nc|ENSG00000168014|Q4AC94-2|C2CD3 nc|ENSG00000168014|Q4AC94-2|C2CD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2562866210938 2 590.268227 1178.5219 NaN NaN NaN NaN NaN NaN NaN 89.431 1 85.387 84.887 85.887 -4.0443 0 0 0 0.21486 1 17038 17038 5.7604 0.52976 1 14639 5868 9560 9563 14711 14711 -0.06021885945892791 FEKIHQETF 9 Unmodified _FEKIHQETF_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2587890625 2 589.795663 1177.57677 NaN NaN NaN NaN NaN NaN NaN 60.451 1 57.518 57.018 58.018 -2.9333 0 0 0 0.21078 1 11632 11632 20.415 3.3016 1 14640 7215 9561 9564 14712 14712 -0.004911758736170668 FEKIHQETF 9 Unmodified _FEKIHQETF_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2533569335938 2 589.795663 1177.57677 NaN NaN NaN NaN NaN NaN NaN 60.781 1 57.467 56.967 57.967 -3.3139 0 0 0 0.23277 1 11324 11324 13.906 0.86358 1 14641 7215 9561 9564 14713 14713 -0.004911758736170668 FEKLARALIWF 11 Unmodified _FEKLARALIWF_ 0 0 0 REV__nc|ENSG00000159593|Q13564-3|NAE1 REV__nc|ENSG00000159593|Q13564-3|NAE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2510986328125 3 465.271207 1392.79179 NaN NaN NaN NaN NaN NaN NaN 135.6 1 130.71 130.21 131.21 -4.8951 0 0 0 0.22632 1 26050 26050 0.03141 0.0052036 1 + 14642 17376 9562 9565 14714 14714 0.11110790661973624 FEKTFAKFYRF 11 Unmodified _FEKTFAKFYRF_ 0 0 0 REV__QSOX2|p.K295Nfs*56|1|0.33|ENSG00000165661|chr9:136219101-136219101|T/-|frameshift_variant REV__QSOX2|p.K295Nfs*56|1|0.33|ENSG00000165661|chr9:136219101-136219101|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3931274414062 2 742.390262 1482.76597 NaN NaN NaN NaN NaN NaN NaN 93.825 1 93.825 93.325 94.325 0 0 0 0 0.23429 1 18366 18366 4.897 2.1618 1 + 14643 17792 9563 9566 14715 14715 0.043898964196841916 FELGSWNEL 9 Unmodified _FELGSWNEL_ 0 0 0 REV__ENST00000304191.3_1_15:83654967-83655093:+|nuORF REV__ENST00000304191.3_1_15:83654967-83655093:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7674560546875 2 547.761289 1093.50803 NaN NaN NaN NaN NaN NaN NaN 137.83 1 137.83 137.33 138.33 0 0 0 0 0.20628 1 27351 27351 21.747 0 1 + 14644 20423 9564 9567 14716 14716 -0.03498840173347162 FELLEPSPD 9 Unmodified _FELLEPSPD_ 0 0 0 REV__LAMA2|p.K682Efs*22|1|0.32|ENSG00000196569|chr6:129252243-129252244|AA/-|frameshift_variant REV__LAMA2|p.K682Efs*22|1|0.32|ENSG00000196569|chr6:129252243-129252244|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6848754882812 2 523.755672 1045.49679 -0.73632 -0.00038565 -1.0399 -0.00054464 -1.7762 -0.00093029 523.754860464531 21.357 0.49002 19.973 19.721 20.211 -1.3847 17 13 2 0 0 0 0.6329 1 3365 3365 10.824 0 1 712110 + 14645 19259 9565 9568 14717 14717 -0.024136622674632235 FELSLEDGGP 10 Unmodified _FELSLEDGGP_ 0 0 0 nc|ENSG00000172663|Q9H6X4-2|TMEM134;nc|ENSG00000172663|Q9H6X4-3|TMEM134;ENSG00000172663|ENST00000308022|TMEM134 nc|ENSG00000172663|Q9H6X4-2|TMEM134 nc|ENSG00000172663|Q9H6X4-2|TMEM134 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2847900390625 2 532.250754 1062.48696 1.091 0.00058066 -0.028615 -1.523E-05 1.0623 0.00056543 532.2506193191916 24.718 1.5656 23.07 22.365 23.931 -1.6482 101 44 3 0 0 0 0.71778 1 4350 4350 9.3831 1.473 1 5178400 14646 6234 9566 9569 14718 14718 -0.0417885027286502 FELYKRRWWKK 11 Unmodified _FELYKRRWWKK_ 0 0 0 REV__ENST00000433473.7_1_1:40558092-40558149:-|nuORF REV__ENST00000433473.7_1_1:40558092-40558149:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7892456054688 3 547.312177 1638.9147 0.132 7.2245E-05 -3.7605 -0.0020582 -3.6285 -0.0019859 547.3106232163391 145.55 0.2038 140.44 140.38 140.58 -5.1108 7 5 2 0 0 0 0.96227 1 28146 28146 0 0 1 6337100 + 14647 21646 9567 9570 14719 14719 0.1208004711322701 FELYKRRWWKK 11 Unmodified _FELYKRRWWKK_ 0 0 0 REV__ENST00000433473.7_1_1:40558092-40558149:-|nuORF REV__ENST00000433473.7_1_1:40558092-40558149:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77099609375 3 547.312177 1638.9147 0.1369 7.4929E-05 0.53425 0.0002924 0.67116 0.00036733 547.3121721521638 146.52 0.10091 141.41 141.34 141.45 -5.1108 4 2 2 0 0 0 0.96224 1 28325 28325 0.094841 0 1 1681000 + 14648 21646 9567 9570 14720 14720 0.1208004711322701 FELYKRRWWKK 11 Unmodified _FELYKRRWWKK_ 0 0 0 REV__ENST00000433473.7_1_1:40558092-40558149:-|nuORF REV__ENST00000433473.7_1_1:40558092-40558149:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7899169921875 3 547.312177 1638.9147 0.40072 0.00021932 -0.17934 -9.8153E-05 0.22138 0.00012116 547.6455229596629 146.98 0.25017 141.98 141.89 142.14 -5 8 6 2 0 0 0 0.96228 1 28431 28431 0 0 1 2621800 + 14649 21646 9567 9570 14721 14721 0.1208004711322701 FEMQFCVLY 9 Unmodified _FEMQFCVLY_ 0 0 0 REV__ENST00000535479.5_1_12:7086310-7087113:-|nuORF REV__ENST00000535479.5_1_12:7086310-7087113:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2685546875 2 590.264296 1178.51404 NaN NaN NaN NaN NaN NaN NaN 106.83 1 102.57 102.07 103.07 -4.2638 0 0 0 0.23508 1 21030 21030 6.7232 0 1 + 14650 15256 9568 9571 14722 14722 -0.06807781257657552 FENGPQNIY 9 Unmodified _FENGPQNIY_ 0 0 0 ENST00000552176.2_17:6916945-6917602:+|nuORF;ENSG00000219200|ENST00000593646|RNASEK;nc|ENSG00000219200|Q6P5S7-2|RNASEK;nc|ENSG00000219200|Q6P5S7|RNASEK ENST00000552176.2_17:6916945-6917602:+|nuORF ENST00000552176.2_17:6916945-6917602:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2619018554688 2 541.251089 1080.48762 0.19103 0.0001034 0.057262 3.0993E-05 0.24829 0.00013439 541.2509500622492 83.623 0.83955 80.016 79.582 80.422 -3.6079 49 23 3 0 0 0 0.11828 1 16386 16386 49.554 2.6334 1 5768700 14651 7757 9569 9572 14723 14723 -0.04940010833138331 FENGPQNIY 9 Unmodified _FENGPQNIY_ 0 0 0 ENST00000552176.2_17:6916945-6917602:+|nuORF;ENSG00000219200|ENST00000593646|RNASEK;nc|ENSG00000219200|Q6P5S7-2|RNASEK;nc|ENSG00000219200|Q6P5S7|RNASEK ENST00000552176.2_17:6916945-6917602:+|nuORF ENST00000552176.2_17:6916945-6917602:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2621459960938 2 541.251089 1080.48762 0.20602 0.00011151 0.26651 0.00014425 0.47253 0.00025576 541.2511509644952 83.797 0.81934 79.888 79.499 80.318 -3.9093 38 22 2 0 0 0 0.23492 1 15932 15932 53.833 13.875 1 2884900 14652 7757 9569 9572 14724 14724 -0.04940010833138331 FENGPQNIY 9 Unmodified _FENGPQNIY_ 0 0 0 ENST00000552176.2_17:6916945-6917602:+|nuORF;ENSG00000219200|ENST00000593646|RNASEK;nc|ENSG00000219200|Q6P5S7-2|RNASEK;nc|ENSG00000219200|Q6P5S7|RNASEK ENST00000552176.2_17:6916945-6917602:+|nuORF ENST00000552176.2_17:6916945-6917602:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2622680664062 2 541.251089 1080.48762 0.018232 9.8679E-06 0.28928 0.00015658 0.30752 0.00016644 541.2510375877956 83.525 0.76595 79.826 79.521 80.287 -3.6985 48 21 3 0 0 0 0.19141 1 15945 15945 57.722 17.765 1 4919000 14653 7757 9569 9572 14725 14725 -0.04940010833138331 FENVVPMSY 9 Unmodified _FENVVPMSY_ 0 0 0 ENST00000582124.1_1_17:15877924-15878653:+|nuORF;ENSG00000170425|ENST00000304222|ADORA2B ENST00000582124.1_1_17:15877924-15878653:+|nuORF ENST00000582124.1_1_17:15877924-15878653:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.770751953125 2 543.252243 1084.48993 0.34158 0.00018556 -1.2994 -0.0007059 -0.95781 -0.00052033 543.2538077146316 139.4 0.31355 134.55 134.35 134.67 -4.8492 14 8 3 0 0 0 0.81359 1 26870 26870 16.149 6.0752 1 1155200 14654 6068 9570 9573 14726 14726 -0.04893298419688108 FEPIRNPTL 9 Unmodified _FEPIRNPTL_ 0 0 0 REV__ENSG00000205502|ENST00000380392|C2CD4B REV__ENSG00000205502|ENST00000380392|C2CD4B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7775268554688 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 137.32 1 132.68 132.18 133.18 -4.6413 0 0 0 0.19679 1 27102 27102 2.6312 1.7561 1 + 14655 19593 9571 9574 14727 14727 0.04757431851612637 FEPRAGASA 9 Unmodified _FEPRAGASA_ 0 0 0 chr7:75813752-75823322|395|20.42|0.13|7.33|-|1|None,CCL24|1 chr7:75813752-75823322|395|20.42|0.13|7.33|-|1|None,CCL24|1 chr7:75813752-75823322|395|20.42|0.13|7.33|-|1|None,CCL24|1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7494812011719 2 453.227417 904.44028 -0.42355 -0.00019196 0.67783 0.00030721 0.25428 0.00011525 453.22771702133247 38.688 1.0928 36.139 35.837 36.93 -2.5491 80 30 4 0 0 0 0.15214 1 7144 7144 43.858 0 1 24540000 14656 550 9572 9575 14728 14728 -0.01576245313481195 FEQQMAKEA 9 Unmodified _FEQQMAKEA_ 0 0 0 CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1;CAMTA1|p.K1259Ifs*22|1|0.18|ENSG00000171735|chr1:7738075-7738076|-/TACAACT|frameshift_variant CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2830810546875 2 541.252774 1080.491 0.62649 0.00033909 0.32555 0.0001762 0.95204 0.00051529 541.754132613875 48.173 0.7372 48.173 47.681 48.418 0 35 20 3 0 0 0 0.58804 1 9079 9079 13.906 0.39817 1 1937100 14657 375 9573 9576 14729 14729 -0.0460308405079104 FEQVVNEL 8 Unmodified _FEQVVNEL_ 0 0 0 BCL2L1|p.Q121P|1|0.16|ENSG00000171552|chr20:31721857-31721857|T/G|missense_variant;nc|ENSG00000171552|Q07817-3|BCL2L1;ENSG00000171552|ENST00000307677|BCL2L1 BCL2L1|p.Q121P|1|0.16|ENSG00000171552|chr20:31721857-31721857|T/G|missense_variant BCL2L1|p.Q121P|1|0.16|ENSG00000171552|chr20:31721857-31721857|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25390625 2 489.250557 976.486562 0.2668 0.00013053 0.2049 0.00010025 0.4717 0.00023078 489.25055220298844 117.13 0.86949 112.64 112.18 113.05 -4.486 52 24 3 0 0 0 0.44108 2 23074 23074;23134 30.637 30.637 1 5011600 14658 309 9574 9577 14730;14731 14730 -0.002622252020501037 FEQVVNEL 8 Unmodified _FEQVVNEL_ 0 0 0 BCL2L1|p.Q121P|1|0.16|ENSG00000171552|chr20:31721857-31721857|T/G|missense_variant;nc|ENSG00000171552|Q07817-3|BCL2L1;ENSG00000171552|ENST00000307677|BCL2L1 BCL2L1|p.Q121P|1|0.16|ENSG00000171552|chr20:31721857-31721857|T/G|missense_variant BCL2L1|p.Q121P|1|0.16|ENSG00000171552|chr20:31721857-31721857|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2662353515625 2 489.250557 976.486562 0.49569 0.00024252 -0.40894 -0.00020007 0.086754 4.2445E-05 489.25030421580317 117.3 0.80051 112.7 112.35 113.15 -4.5994 53 22 3 0 0 0 0.71876 1 22528 22528 11.64 0.81637 1 3882300 14659 309 9574 9577 14732 14732 -0.002622252020501037 FEQVVNEL 8 Unmodified _FEQVVNEL_ 0 0 0 BCL2L1|p.Q121P|1|0.16|ENSG00000171552|chr20:31721857-31721857|T/G|missense_variant;nc|ENSG00000171552|Q07817-3|BCL2L1;ENSG00000171552|ENST00000307677|BCL2L1 BCL2L1|p.Q121P|1|0.16|ENSG00000171552|chr20:31721857-31721857|T/G|missense_variant BCL2L1|p.Q121P|1|0.16|ENSG00000171552|chr20:31721857-31721857|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2531433105469 2 489.250557 976.486562 0.21762 0.00010647 -0.98245 -0.00048066 -0.76483 -0.00037419 489.2504741139054 117.06 0.88681 112.7 112.24 113.12 -4.3585 75 24 5 0 0 0 0.62642 1 22533 22533 20.454 6.9457 1 5574200 14660 309 9574 9577 14733 14733 -0.002622252020501037 FEQVVNEL 8 Unmodified _FEQVVNEL_ 0 0 0 BCL2L1|p.Q121P|1|0.16|ENSG00000171552|chr20:31721857-31721857|T/G|missense_variant;nc|ENSG00000171552|Q07817-3|BCL2L1;ENSG00000171552|ENST00000307677|BCL2L1 BCL2L1|p.Q121P|1|0.16|ENSG00000171552|chr20:31721857-31721857|T/G|missense_variant BCL2L1|p.Q121P|1|0.16|ENSG00000171552|chr20:31721857-31721857|T/G|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.250557 976.486562 0.2668 0.00013053 0.2049 0.00010025 0.4717 0.00023078 489.25055220298844 117.13 0.86949 112.64 112.18 113.05 -4.486 -0.0049852 0.00049459 NaN 30.637 52 24 3 NaN NaN NaN NaN 0 NaN NaN 0 5011600 14661 309 9574 9577 -0.002622252020501037 FERDVTMAKLY 11 Unmodified _FERDVTMAKLY_ 0 0 0 REV__ENSG00000160349|ENST00000371781|LCN1 REV__ENSG00000160349|ENST00000371781|LCN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23736572265625 3 458.235834 1371.68567 NaN NaN NaN NaN NaN NaN NaN 130.62 1 125.99 125.49 126.49 -4.6359 0 0 0 0.22632 1 25741 25741 0.026206 0 1 + 14662 17417 9575 9578 14734 14734 0.014696670343482765 FERHGLRSFA 10 Unmodified _FERHGLRSFA_ 0 0 0 REV__ENST00000164247.5_1_1:6094826-6100611:+|nuORF REV__ENST00000164247.5_1_1:6094826-6100611:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 610.3195190429688 2 610.320171 1218.62579 NaN NaN NaN NaN NaN NaN NaN 165.61 1 160.82 160.32 161.32 -4.7898 0 0 0 0.22588 1 33184 33184 12.241 1.4167 1 + 14663 19979 9576 9579 14735 14735 0.02522157205999065 FERHSRVY 8 Unmodified _FERHSRVY_ 0 0 0 nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1;MYBPC1|p.K397Nfs*4|1|0.2|ENSG00000196091|chr12:101649324-101649324|A/-|frameshift_variant nc|ENSG00000196091|Q00872-5|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7844848632812 2 547.280515 1092.54648 -0.162 -8.8658E-05 3.1932 0.0017476 3.0312 0.0016589 547.7843683376307 109.57 0.6641 105.12 104.68 105.34 -4.4518 36 18 3 0 0 0 0.70613 1 20984 20984 13.508 0.97634 1 799920 14664 7233 9577 9580 14736 14736 0.003905102518729109 FESGALTLYLF 11 Unmodified _FESGALTLYLF_ 0 0 0 REV__ENSG00000203661|ENST00000641363|OR2T5 REV__ENSG00000203661|ENST00000641363|OR2T5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7509765625 2 630.829172 1259.64379 NaN NaN NaN NaN NaN NaN NaN 129.61 1 124.98 124.48 125.48 -4.6292 0 0 0 0.22943 1 25540 25540 8.7454 2.0222 1 + 14665 18799 9578 9581 14737 14737 0.024354346174504826 FESKLNNKV 9 Unmodified _FESKLNNKV_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 92.364 1 88.439 87.939 88.939 -3.9251 0 0 0 0.23508 1 18089 18089 7.1017 1.8048 1 14666 5226 9579 9582 14738 14738 0.0461712798901317 FESLKQVSVL 10 Unmodified _FESLKQVSVL_ 0 0 0 REV__ENSG00000006071|ENST00000389817|ABCC8 REV__ENSG00000006071|ENST00000389817|ABCC8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3326416015625 2 575.329339 1148.64412 -0.019477 -1.1206E-05 1.2047 0.00069311 1.1852 0.00068191 575.3299599353832 133.88 1.2318 129.24 128.79 130.02 -4.6399 75 34 3 0 0 0 0.71778 1 26465 26465 9.3831 2.66 1 9329700 + 14667 13868 9580 9583 14739 14739 0.07574854337326542 FESVCPWPD 9 Unmodified _FESVCPWPD_ 0 0 0 REV__ENST00000373750.8_1_20:35399862-35402095:-|nuORF REV__ENST00000373750.8_1_20:35399862-35402095:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2589111328125 2 540.228768 1078.44298 0.56563 0.00030557 -1.001 -0.00054075 -0.43534 -0.00023518 540.228166793873 44.559 1.0439 44.559 44.189 45.233 0 88 29 4 0 0 0 0.55979 1 8378 8378 15.847 1.0089 1 36443000 + 14668 21047 9581 9584 14740 14740 -0.0931015797082182 FETEIEQF 8 Unmodified _FETEIEQF_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2615356445312 2 521.740022 1041.46549 -0.2099 -0.00010951 0.2995 0.00015626 0.089599 4.6747E-05 521.7400998549006 129.44 0.69009 124.81 124.4 125.09 -4.6292 21 13 2 0 0 0 0.27274 2 25528 25526;25528 45.004 25.613 1 1984600 14669 6201 9582 9585 14741;14742 14742 -0.05358235301559944 FETEIEQF 8 Unmodified _FETEIEQF_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2686157226562 2 521.740022 1041.46549 0.21759 0.00011352 0.027887 1.455E-05 0.24548 0.00012807 521.7400352138603 129.58 0.74828 124.84 124.46 125.21 -4.7408 25 15 2 0 0 0 8448 1 24883 24883 26.884 20.692 1 1274000 14670 6201 9582 9585 14743 14743 -0.05358235301559944 FEVCRTVC 8 Unmodified _FEVCRTVC_ 0 0 0 ENST00000549335.5_1_12:105433559-105443704:-|nuORF ENST00000549335.5_1_12:105433559-105443704:-|nuORF ENST00000549335.5_1_12:105433559-105443704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7221374511719 2 478.720055 955.425558 NaN NaN NaN NaN NaN NaN NaN 111.46 1 106.97 106.47 107.47 -4.4915 0 0 0 0.20896 1 21391 21391 18.135 4.6271 1 14671 11161 9583 9586 14744 14744 -0.05393776777486892 FEVLHKEYS 9 Unmodified _FEVLHKEYS_ 0 0 0 REV__ENSG00000179256|ENST00000316048|SMCO3 REV__ENSG00000179256|ENST00000316048|SMCO3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.335693359375 2 576.290214 1150.56587 0.29384 0.00016934 -0.17127 -9.8699E-05 0.12257 7.0636E-05 576.292232678343 129.45 0.23665 129.45 129.33 129.57 0 9 6 3 0 0 0 0.54354 1 25579 25579 16.942 0 1 2282700 + 14672 18647 9584 9587 14745 14745 -0.0033857824789720325 FEVQHSEGY 9 Unmodified _FEVQHSEGY_ 0 0 0 NDE1|p.M193Cfs*34|1|0.36|ENSG00000072864|chr16:15691192-15691192|C/-|frameshift_variant;NDE1|p.L245Pfs*70|1|0.15|ENSG00000072864|chr16:15694188-15694189|-/C|frameshift_variant;ENSG00000072864|ENST00000396354|NDE1;nc|ENSG00000072864|Q9NXR1-1|NDE1 NDE1|p.M193Cfs*34|1|0.36|ENSG00000072864|chr16:15691192-15691192|C/-|frameshift_variant NDE1|p.M193Cfs*34|1|0.36|ENSG00000072864|chr16:15691192-15691192|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7875366210938 2 548.240721 1094.46689 0.60747 0.00033304 0.4163 0.00022824 1.0238 0.00056128 548.241080700962 48.754 0.2869 48.754 48.628 48.915 0 10 7 2 0 0 0 0.76271 1 9233 9233 14.838 0 1 1966100 14673 1476 9585 9588 14746 14746 -0.07656601212784153 FEVQHSEGY 9 Unmodified _FEVQHSEGY_ 0 0 0 NDE1|p.M193Cfs*34|1|0.36|ENSG00000072864|chr16:15691192-15691192|C/-|frameshift_variant;NDE1|p.L245Pfs*70|1|0.15|ENSG00000072864|chr16:15694188-15694189|-/C|frameshift_variant;ENSG00000072864|ENST00000396354|NDE1;nc|ENSG00000072864|Q9NXR1-1|NDE1 NDE1|p.M193Cfs*34|1|0.36|ENSG00000072864|chr16:15691192-15691192|C/-|frameshift_variant NDE1|p.M193Cfs*34|1|0.36|ENSG00000072864|chr16:15691192-15691192|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7679443359375 2 548.240721 1094.46689 0.018486 1.0135E-05 1.5014 0.0008231 1.5198 0.00083324 548.2406614951102 52.126 0.51788 49.075 48.76 49.278 -3.0517 31 14 3 0 0 0 0.45788 1 9610 9610 39.95 1.7741 1 721020 14674 1476 9585 9588 14747 14747 -0.07656601212784153 FEVWLLACT 9 Unmodified _FEVWLLACT_ 0 0 0 RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.3|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2744140625 2 541.272978 1080.5314 NaN NaN NaN NaN NaN NaN NaN 115.14 1 110.67 110.17 111.17 -4.4726 0 0 0 0.21065 1 22692 22692 20.454 8.8133 1 14675 6072 9586 9589 14748 14748 -0.005641176603603526 FEWENKVTV 9 Unmodified _FEWENKVTV_ 0 0 0 ENST00000526527.1_1_11:14481741-14482839:-|nuORF;ENSG00000129083|ENST00000439561|COPB1 ENST00000526527.1_1_11:14481741-14482839:-|nuORF ENST00000526527.1_1_11:14481741-14482839:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.337158203125 2 576.290214 1150.56587 0.28951 0.00016684 0.22076 0.00012722 0.51028 0.00029407 576.2904697549218 121.2 0.68262 121.2 121 121.68 0 34 18 3 0 0 0 0.053446 1 23910 23910 69.338 31.163 1 5001500 14676 3554 9587 9590 14749 14749 -0.0033857824791994062 FEWENKVTV 9 Unmodified _FEWENKVTV_ 0 0 0 ENST00000526527.1_1_11:14481741-14482839:-|nuORF;ENSG00000129083|ENST00000439561|COPB1 ENST00000526527.1_1_11:14481741-14482839:-|nuORF ENST00000526527.1_1_11:14481741-14482839:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3109130859375 2 576.290214 1150.56587 0.1361 7.8431E-05 0.47747 0.00027516 0.61356 0.00035359 576.2904642698162 125.87 0.81442 121.28 120.9 121.71 -4.5984 48 22 3 0 0 0 0.028868 1 24832 24832 117.84 73.979 1 10316000 14677 3554 9587 9590 14750 14750 -0.0033857824791994062 FEWENKVTV 9 Unmodified _FEWENKVTV_ 0 0 0 ENST00000526527.1_1_11:14481741-14482839:-|nuORF;ENSG00000129083|ENST00000439561|COPB1 ENST00000526527.1_1_11:14481741-14482839:-|nuORF ENST00000526527.1_1_11:14481741-14482839:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3160400390625 2 576.290214 1150.56587 0.39891 0.00022989 -0.093991 -5.4166E-05 0.30492 0.00017572 576.2902503609396 126.04 0.72543 121.27 120.94 121.66 -4.7681 47 20 3 0 0 0 0.014569 4 24187 24160;24165;24187;24235 97.741 61.614 1 9428800 14678 3554 9587 9590 14751;14752;14753;14754 14753 -0.0033857824791994062 FEWENKVTV 9 Unmodified _FEWENKVTV_ 0 0 0 ENST00000526527.1_1_11:14481741-14482839:-|nuORF;ENSG00000129083|ENST00000439561|COPB1 ENST00000526527.1_1_11:14481741-14482839:-|nuORF ENST00000526527.1_1_11:14481741-14482839:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33837890625 2 576.290214 1150.56587 0.21169 0.00012199 0.12086 6.9651E-05 0.33255 0.00019164 576.2902605535255 125.94 0.63895 121.3 120.98 121.62 -4.6495 42 17 3 0 0 0 0.002442 4 24227 24217;24227;24257;24276 117.84 65.569 1 6706900 14679 3554 9587 9590 14755;14756;14757;14758 14756 -0.0033857824791994062 FEYCWDTFVY 10 Unmodified _FEYCWDTFVY_ 0 0 0 nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B nc|ENSG00000179750|Q9UH17-3|APOBEC3B nc|ENSG00000179750|Q9UH17-3|APOBEC3B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2252197265625 3 458.190002 1371.54818 NaN NaN NaN NaN NaN NaN NaN 119.72 1 119.72 119.22 120.22 0 0 0 0 2.8426 1 23594 23594 0.063865 0 1 14680 6641 9588 9591 14759 14759 -0.12273661565086513 FFDGVSLC 8 Unmodified _FFDGVSLC_ 0 0 0 AluY_dup97854|chr19:41730139-41730433:+|4.029285449154428|0.0051946344782714|9.6|481.0|17|3|anti-sense AluY_dup97854|chr19:41730139-41730433:+|4.029285449154428|0.0051946344782714|9.6|481.0|17|3|anti-sense AluY_dup97854|chr19:41730139-41730433:+|4.029285449154428|0.0051946344782714|9.6|481.0|17|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 444.20196533203125 2 444.202021 886.38949 NaN NaN NaN NaN NaN NaN NaN 124.38 1 119.81 119.31 120.31 -4.5757 0 0 0 0.22692 1 24527 24527 1.7423 0 1 14681 142 9589 9592 14760 14760 -0.05824910682690643 FFEGLYVS 8 Unmodified _FFEGLYVS_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23797607421875 2 481.236919 960.459284 NaN NaN NaN NaN NaN NaN NaN 125.19 1 125.19 124.69 125.69 0 0 0 0 0.23025 1 24689 24689 0.25148 0 1 + 14682 15218 9590 9593 14761 14761 -0.022527087424236925 FFFFFRFRRKA 11 Unmodified _FFFFFRFRRKA_ 0 0 0 ENST00000554233.1_1_14:76524934-76525784:+|nuORF ENST00000554233.1_1_14:76524934-76525784:+|nuORF ENST00000554233.1_1_14:76524934-76525784:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3839721679688 2 784.935506 1567.85646 NaN NaN NaN NaN NaN NaN NaN 173.31 1 173.31 172.81 173.81 0 0 0 0 0.22632 1 35831 35831 0.094841 0 1 14683 11216 9591 9594 14762 14762 0.09524410258632088 FFFIGLGE 8 Unmodified _FFFIGLGE_ 0 0 0 REV__ENST00000267205.6_1_12:122216327-122216612:-|nuORF REV__ENST00000267205.6_1_12:122216327-122216612:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2417907714844 2 465.242004 928.469455 NaN NaN NaN NaN NaN NaN NaN 62.975 1 60.003 59.503 60.503 -2.9716 0 0 0 0.23312 1 12155 12155 6.2058 6.1418 1 + 14684 20257 9592 9595 14763 14763 0.0023589898281670685 FFFLGPGM 8 Unmodified _FFFLGPGM_ 0 0 0 ENST00000378347.2_1_16:89006201-89006603:+|nuORF ENST00000378347.2_1_16:89006201-89006603:+|nuORF ENST00000378347.2_1_16:89006201-89006603:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2251281738281 2 458.2253 914.436046 NaN NaN NaN NaN NaN NaN NaN 16.456 1 15.103 14.603 15.603 -1.3534 0 0 0 0.2396 1 2335 2335 0.12286 0 1 14685 9280 9593 9596 14764 14764 -0.0245942606072731 FFFRVYMERF 10 Unmodified _FFFRVYMERF_ 0 0 0 REV__nc|ENSG00000109680|Q8N5T2-2|TBC1D19 REV__nc|ENSG00000109680|Q8N5T2-2|TBC1D19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2422180175781 3 481.241031 1440.70126 0.30889 0.00014865 1.2749 0.00061352 1.5838 0.00076217 481.2417715126485 74.138 1.0229 70.544 69.758 70.781 -3.594 73 28 3 0 0 0 0.75099 1 13942 13942 5.4027 1.5568 1 3378500 + 14686 15169 9594 9597 14765 14765 -0.0014600165795854991 FFFYFQCVPY 10 Unmodified _FFFYFQCVPY_ 0 0 0 ENST00000514335.1_1_5:37051847-37064632:+|nuORF ENST00000514335.1_1_5:37051847-37064632:+|nuORF ENST00000514335.1_1_5:37051847-37064632:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.755859375 3 454.207216 1359.59982 0.65041 0.00029542 1.633 0.00074173 2.2834 0.0010372 454.2077042021473 100.88 0.74444 100.88 100.51 101.26 0 61 20 4 0 0 0 0.91149 1 19827 19827 6.6304 0.43853 1 7361600 14687 10772 9595 9598 14766 14766 -0.06559873080504985 FFGGPVLL 8 Unmodified _FFGGPVLL_ 0 0 0 REV__nc|ENSG00000140506|Q9HAT1-3|LMAN1L REV__nc|ENSG00000140506|Q9HAT1-3|LMAN1L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2454528808594 2 425.247089 848.479626 NaN NaN NaN NaN NaN NaN NaN 89.953 1 86.093 85.593 86.593 -3.8595 0 0 0 0.20082 1 17599 17599 24.21 1.0615 1 + 14688 16580 9596 9599 14767 14767 0.049325067080417284 FFGHRFWKTEL 11 Unmodified _FFGHRFWKTEL_ 0 0 0 ENSG00000064115|ENST00000343028|TM7SF3 ENSG00000064115|ENST00000343028|TM7SF3 ENSG00000064115|ENST00000343028|TM7SF3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2633361816406 3 489.922578 1466.7459 NaN NaN NaN NaN NaN NaN NaN 128.45 1 128.45 127.95 128.95 0 0 0 0 0.22632 1 25369 25369 0.172 0 1 14689 1329 9597 9600 14768 14768 0.031201454797610495 FFGIDMVVY 9 Unmodified _FFGIDMVVY_ 0 0 0 OR2A2|p.A254D|1|0.09|ENSG00000221989|chr7:144110343-144110343|C/A|missense_variant OR2A2|p.A254D|1|0.09|ENSG00000221989|chr7:144110343-144110343|C/A|missense_variant OR2A2|p.A254D|1|0.09|ENSG00000221989|chr7:144110343-144110343|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.896484375 3 364.180778 1089.5205 -0.2638 -9.6071E-05 -2.1756 -0.0007923 -2.4394 -0.00088837 364.1799823735573 19.071 0.87055 19.071 18.474 19.344 0 44 24 2 0 0 0 0.6226 1 2976 2976 4.897 4.4887 1 3373400 14690 12725 9598 9601 14769 14769 -0.020675200346431666 FFGIDMVVY 9 Unmodified _FFGIDMVVY_ 0 0 0 OR2A2|p.A254D|1|0.09|ENSG00000221989|chr7:144110343-144110343|C/A|missense_variant OR2A2|p.A254D|1|0.09|ENSG00000221989|chr7:144110343-144110343|C/A|missense_variant OR2A2|p.A254D|1|0.09|ENSG00000221989|chr7:144110343-144110343|C/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 364.180778 1089.5205 -0.24398 -8.8851E-05 -2.351 -0.00085618 -2.5949 -0.00094503 364.1798149580405 20.464 0.77153 19.079 18.5 19.271 -1.3847 0.0043665 -0.00010182 NaN 4.897 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2458000 14691 12725 9598 9601 -0.020675200346431666 FFHDENEKL 9 Unmodified _FFHDENEKL_ 0 0 0 REV__FAM118A|p.R346Tfs*7|1|0.31|ENSG00000100376|chr22:45336385-45336386|-/A|frameshift_variant REV__FAM118A|p.R346Tfs*7|1|0.31|ENSG00000100376|chr22:45336385-45336386|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.273681640625 2 589.77747 1177.54039 0.60384 0.00035613 0.050247 2.9635E-05 0.65409 0.00038577 589.777390235021 164.38 0.44942 159.33 159.14 159.59 -5.0446 28 12 3 0 0 0 0.75112 1 32012 32012 3.9444 0.3479 1 23131000 + 14692 14704 9599 9602 14770 14770 -0.041280527703293046 FFHLYLKVD 9 Unmodified _FFHLYLKVD_ 0 0 0 ENST00000589314.1_1_18:55268886-55269748:-|nuORF ENST00000589314.1_1_18:55268886-55269748:-|nuORF ENST00000589314.1_1_18:55268886-55269748:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 395.55426025390625 3 394.54997 1180.62808 0.17523 6.9137E-05 -0.80779 -0.00031871 -0.63256 -0.00024958 394.5495921558762 74.334 0.6214 70.657 70.347 70.968 -3.6764 40 17 3 0 0 0 0.60489 1 14077 14077 2.4985 0 1 1993800 14693 11586 9600 9603 14771 14771 0.044991928910803836 FFHTSSFLRRW 11 Unmodified _FFHTSSFLRRW_ 0 0 0 REV__ENST00000591390.1_1_19:639949-640279:+|nuORF REV__ENST00000591390.1_1_19:639949-640279:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3818359375 2 742.383303 1482.75205 NaN NaN NaN NaN NaN NaN NaN 134.58 1 134.58 134.08 135.08 0 0 0 0 0.22632 1 26643 26643 0.026206 0.026206 1 + 14694 14256 9601 9604 14772 14772 0.02998663711264271 FFHWFSKWRK 10 Unmodified _FFHWFSKWRK_ 0 0 0 ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2587890625 3 490.259413 1467.75641 NaN NaN NaN NaN NaN NaN NaN 46.325 1 43.458 42.958 43.958 -2.8666 0 0 0 2.8426 1 8430 8430 0.13989 0 1 14695 7839 9602 9605 14773 14773 0.04124172924821323 FFIHRRRKN 9 Unmodified _FFIHRRRKN_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2511901855469 3 425.25114 1272.73159 -0.36983 -0.00015727 0.73716 0.00031348 0.36733 0.00015621 425.2514321682419 17.478 0.48079 16.167 15.958 16.439 -1.3109 20 13 2 0 0 0 0.54076 4 2784 2780;2783;2784;2830 17.113 6.9623 1 475030 14696 4434 9603 9606 14774;14775;14776;14777 14776 0.10613537842118603 FFKIKVQHIEL 11 Unmodified _FFKIKVQHIEL_ 0 0 0 REV__ENST00000359142.7_1_12:90049681-90049732:-|nuORF REV__ENST00000359142.7_1_12:90049681-90049732:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 467.7746276855469 3 467.946612 1400.81801 NaN NaN NaN NaN NaN NaN NaN 55.19 1 52.053 51.553 52.553 -3.1377 0 0 0 0.22632 1 10239 10239 1.4551 0 1 + 14697 20847 9604 9607 14778 14778 0.13363059833500301 FFLFRPLDP 9 Unmodified _FFLFRPLDP_ 0 0 0 REV__ENSG00000234224|ENST00000455783|TMEM229A REV__ENSG00000234224|ENST00000455783|TMEM229A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3313598632812 2 576.316035 1150.61752 NaN NaN NaN NaN NaN NaN NaN 148.33 1 148.33 147.83 148.83 0 0 0 0 0.23508 1 29683 29683 9.3831 0.035688 1 + 14698 19758 9605 9608 14779 14779 0.04823210236668274 FFLIQEKVQ 9 Unmodified _FFLIQEKVQ_ 0 0 0 SLC37A4|p.G256V|1|0.08|ENSG00000137700|chr11:119026954-119026954|C/A|missense_variant SLC37A4|p.G256V|1|0.08|ENSG00000137700|chr11:119026954-119026954|C/A|missense_variant SLC37A4|p.G256V|1|0.08|ENSG00000137700|chr11:119026954-119026954|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3329467773438 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 138.53 1 133.69 133.19 134.19 -4.84 0 0 0 0.19665 1 26698 26698 1.2148 0.9078 1 14699 25684 9606 9609 14780 14780 0.06935175545504535 FFLLWIKSWRK 11 Unmodified _FFLLWIKSWRK_ 0 0 0 REV__nc|ENSG00000172782|Q8N9I5-2|FADS6 REV__nc|ENSG00000172782|Q8N9I5-2|FADS6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.5578308105469 4 381.727595 1522.88128 -0.25093 -9.5787E-05 -0.84361 -0.00032203 -1.0945 -0.00041782 381.7273028057175 13.816 0.17882 13.816 13.719 13.898 0 8 4 3 0 0 0 0.89134 1 2002 2002 0 0 1 292110 + 14700 18309 9607 9610 14781 14781 0.140750453413375 FFLMQRKWVLL 11 Unmodified _FFLMQRKWVLL_ 0 0 0 REV__ENST00000423725.5_1_2:207003318-207006755:-|nuORF REV__ENST00000423725.5_1_2:207003318-207006755:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 494.2334899902344 3 494.288092 1479.84245 NaN NaN NaN NaN NaN NaN NaN 101.78 1 101.78 101.28 102.28 0 0 0 0 0.22632 1 19986 19986 0.03141 0 1 + 14701 21537 9608 9611 14782 14782 0.12171996715346722 FFLVAGLNY 9 Unmodified _FFLVAGLNY_ 0 0 0 nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B;FAM135B|p.E1394D|1|0.32|ENSG00000147724|chr8:138132632-138132632|C/A|missense_variant nc|ENSG00000147724|Q49AJ0-2|FAM135B nc|ENSG00000147724|Q49AJ0-2|FAM135B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2787475585938 2 522.28166 1042.54877 NaN NaN NaN NaN NaN NaN NaN 19.233 1 17.598 17.098 18.098 -1.6351 0 0 0 0.21848 1 2889 2889 18.135 5.0925 1 14702 4716 9609 9612 14783 14783 0.029195459369248056 FFNFYFLRWRF 11 Unmodified _FFNFYFLRWRF_ 0 0 0 AluSc8_dup7305|chr6:30493012-30493324:+|1.025799963262684|0.0449135051643763|4.51|481.0|21|3|anti-sense AluSc8_dup7305|chr6:30493012-30493324:+|1.025799963262684|0.0449135051643763|4.51|481.0|21|3|anti-sense AluSc8_dup7305|chr6:30493012-30493324:+|1.025799963262684|0.0449135051643763|4.51|481.0|21|3|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7904663085938 3 548.282106 1641.82449 0.11085 6.0777E-05 -4.3189 -0.002368 -4.2081 -0.0023072 548.2789587633039 141.11 0.14124 136.12 136.06 136.2 -4.9877 5 3 2 0 0 0 0.96225 1 27164 27164 0.45452 0.35968 1 1602900 14703 132 9610 9613 14784 14784 0.02924997784793959 FFNLRSPY 8 Unmodified _FFNLRSPY_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2692260742188 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 120.33 1 115.68 115.18 116.18 -4.645 0 0 0 0.23025 1 23097 23097 0.62683 0.21856 1 14704 6679 9611 9614 14785 14785 0.004054911343700951 FFNVLSTT 8 Unmodified _FFNVLSTT_ 0 0 0 REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant REV__ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.163330078125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 149.17 1 144.05 143.55 144.55 -5.1204 0 0 0 0.21486 1 28901 28901 0.45834 0 1 + 14705 13157 9612 9615 14786 14786 0.003546936318457483 FFPHGPAR 8 Unmodified _FFPHGPAR_ 0 0 0 REV__ENST00000218981.5_1_13:52343290-52346021:-|nuORF REV__ENST00000218981.5_1_13:52343290-52346021:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16461181640625 3 310.16445 927.471521 NaN NaN NaN NaN NaN NaN NaN 65.342 1 65.342 64.842 65.842 0 0 0 0 0.23899 1 12596 12596 1.3295 0 1 + 14706 20025 9613 9616 14787 14787 0.004883725112790671 FFQRRMRSRWQ 11 Unmodified _FFQRRMRSRWQ_ 0 0 0 REV__ENST00000382214.7_1_20:388725-389346:+|nuORF REV__ENST00000382214.7_1_20:388725-389346:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2813110351562 3 533.280882 1596.82082 NaN NaN NaN NaN NaN NaN NaN 45.005 1 42.257 41.757 42.757 -2.7475 0 0 0 0.22632 1 8159 8159 1.4074 0.90148 1 + 14707 21177 9614 9617 14788 14788 0.046280047393338464 FFRRYERRVKL 11 Unmodified _FFRRYERRVKL_ 0 0 0 REV__MYO1B|p.K859R|1|0.1|ENSG00000128641|chr2:191408134-191408134|A/G|missense_variant REV__MYO1B|p.K859R|1|0.1|ENSG00000128641|chr2:191408134-191408134|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3834228515625 2 785.459876 1568.9052 NaN NaN NaN NaN NaN NaN NaN 177.59 1 172.73 172.23 173.23 -4.8686 0 0 0 0.22632 1 35345 35345 0.094841 0 1 + 14708 23902 9615 9618 14789 14789 0.14350278827714646 FFSEEFYFE 9 Unmodified _FFSEEFYFE_ 0 0 0 RASA2|p.N656Tfs*21|4|0.34|ENSG00000155903|chr3:141607706-141607706|A/-|frameshift_variant;ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2 RASA2|p.N656Tfs*21|4|0.34|ENSG00000155903|chr3:141607706-141607706|A/-|frameshift_variant RASA2|p.N656Tfs*21|4|0.34|ENSG00000155903|chr3:141607706-141607706|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.763427734375 2 622.760955 1243.50736 NaN NaN NaN NaN NaN NaN NaN 68.85 1 68.85 68.35 69.35 0 0 0 0 0.19632 1 13319 13319 0.073264 0 1 14709 5069 9616 9619 14790 14790 -0.10465679613025713 FFSEEFYFE 9 Unmodified _FFSEEFYFE_ 0 0 0 RASA2|p.N656Tfs*21|4|0.34|ENSG00000155903|chr3:141607706-141607706|A/-|frameshift_variant;ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2 RASA2|p.N656Tfs*21|4|0.34|ENSG00000155903|chr3:141607706-141607706|A/-|frameshift_variant RASA2|p.N656Tfs*21|4|0.34|ENSG00000155903|chr3:141607706-141607706|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7612915039062 2 622.760955 1243.50736 NaN NaN NaN NaN NaN NaN NaN 32.509 1 30.483 29.983 30.983 -2.0264 0 0 0 0.19624 1 5642 5642 0 0 1 14710 5069 9616 9619 14791 14791 -0.10465679613025713 FFSLQCGRCSP 11 Unmodified _FFSLQCGRCSP_ 0 0 0 ENST00000592839.6_1_19:2243417-2245742:+|nuORF ENST00000592839.6_1_19:2243417-2245742:+|nuORF ENST00000592839.6_1_19:2243417-2245742:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7669677734375 2 622.781176 1243.5478 0.22999 0.00014324 -0.80981 -0.00050433 -0.57982 -0.0003611 622.7807227993687 90.861 0.70925 90.861 90.472 91.181 0 23 19 2 0 0 0 0.66095 1 17782 17782 14.405 2.1647 1 1602700 14711 11638 9617 9620 14792 14792 -0.06423359765904024 FFTFQLLFYF 10 Unmodified _FFTFQLLFYF_ 0 0 0 ENSG00000152078|ENST00000370203|TLCD4 ENSG00000152078|ENST00000370203|TLCD4 ENSG00000152078|ENST00000370203|TLCD4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23748779296875 3 458.237392 1371.69035 NaN NaN NaN NaN NaN NaN NaN 118.36 1 118.36 117.86 118.86 0 0 0 0 2.8426 1 23311 23311 1.9275 1.6621 1 14712 4900 9618 9621 14793 14793 0.01936919239415147 FFTGGGGL 8 Unmodified _FFTGGGGL_ 0 0 0 ENST00000264025.7_1_11:119535043-119535469:-|nuORF ENST00000264025.7_1_11:119535043-119535469:-|nuORF ENST00000264025.7_1_11:119535043-119535469:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.1907958984375 2 378.189771 754.36499 NaN NaN NaN NaN NaN NaN NaN 131.37 1 131.37 130.87 131.87 0 0 0 0 0.21486 1 25974 25974 2.8892 2.0956 1 14713 8331 9619 9622 14794 14794 -0.02201802773890904 FFTHHYVD 8 Unmodified _FFTHHYVD_ 0 0 0 REV__ENSG00000090861|ENST00000261772|AARS1 REV__ENSG00000090861|ENST00000261772|AARS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27490234375 2 533.243067 1064.47158 NaN NaN NaN NaN NaN NaN NaN 129.12 1 129.12 128.62 129.62 0 0 0 0 0.2343 1 25504 25504 0.62683 0 1 + 14714 14554 9620 9623 14795 14795 -0.05807672279388498 FFVANKYWRY 10 Unmodified _FFVANKYWRY_ 0 0 0 ENSG00000196611|ENST00000315274|MMP1 ENSG00000196611|ENST00000315274|MMP1 ENSG00000196611|ENST00000315274|MMP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2524719238281 3 465.239907 1392.69789 NaN NaN NaN NaN NaN NaN NaN 38.105 1 35.636 35.136 36.136 -2.4688 0 0 0 2.8426 1 7052 7052 0.84494 0 1 14715 7291 9621 9624 14796 14796 0.0172507155969015 FFVCCFWWCCF 11 Unmodified _FFVCCFWWCCF_ 0 0 0 REV__ENST00000542440.5_1_12:122269651-122270002:+|nuORF REV__ENST00000542440.5_1_12:122269651-122270002:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 497.5408935546875 3 497.523276 1489.548 NaN NaN NaN NaN NaN NaN NaN 158.79 1 158.79 158.29 159.29 0 0 0 0 0.22632 1 31883 31883 0.2986 0.28479 1 + 14716 22873 9622 9625 14797 14797 -0.17719399361908472 FFVFVFFE 8 Unmodified _FFVFVFFE_ 0 0 0 ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2828979492188 2 541.273304 1080.53206 NaN NaN NaN NaN NaN NaN NaN 120.79 1 116.32 115.82 116.82 -4.467 0 0 0 0.2074 1 23257 23257 19.439 3.5918 1 14717 11310 9623 9626 14798 14798 -0.004989549489891942 FFVFVFFE 8 Unmodified _FFVFVFFE_ 0 0 0 ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2699584960938 2 541.273304 1080.53206 NaN NaN NaN NaN NaN NaN NaN 120.83 1 116.36 115.86 116.86 -4.467 0 0 0 0.22934 1 23267 23267 0.62683 0 1 14718 11310 9623 9626 14799 14799 -0.004989549489891942 FFVGSHFS 8 Unmodified _FFVGSHFS_ 0 0 0 REV__ENST00000336838.10_1_2:55646247-55646439:-|nuORF REV__ENST00000336838.10_1_2:55646247-55646439:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1658020019531 3 309.816827 926.428653 NaN NaN NaN NaN NaN NaN NaN 54.119 1 50.984 50.484 51.484 -3.1352 0 0 0 0.21486 1 9974 9974 3.5965 0 1 + 14719 20669 9624 9627 14800 14800 -0.03750442336809101 FFVNFVVG 8 Unmodified _FFVNFVVG_ 0 0 0 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1701354980469 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 96.393 1 96.393 95.893 96.893 0 0 0 0 0.21486 1 18886 18886 0.45834 0 1 14720 6164 9625 9628 14801 14801 0.01879605219721725 FFVNFVVG 8 Unmodified _FFVNFVVG_ 0 0 0 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 97.947 1 97.947 97.447 98.447 0 0 0 0 0.21486 1 19198 19198 0.45834 0 1 14721 6164 9625 9628 14802 14802 0.01879605219721725 FFVNFVVG 8 Unmodified _FFVNFVVG_ 0 0 0 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17047119140625 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 143.3 1 143.3 142.8 143.8 0 0 0 0 0.21486 1 28591 28591 0.45834 0 1 14722 6164 9625 9628 14803 14803 0.01879605219721725 FFWIWCTTTWV 11 Unmodified _FFWIWCTTTWV_ 0 0 0 ENST00000374541.3_1_9:112219624-112225605:-|nuORF ENST00000374541.3_1_9:112219624-112225605:-|nuORF ENST00000374541.3_1_9:112219624-112225605:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 497.23736572265625 3 497.237286 1488.69003 NaN NaN NaN NaN NaN NaN NaN 97.672 1 93.438 92.938 93.938 -4.2348 0 0 0 0.22632 1 18659 18659 1.4551 0 1 14723 9221 9626 9629 14804 14804 -0.03476823752112068 FFYYEIYQRIK 11 Unmodified _FFYYEIYQRIK_ 0 0 0 REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3990478515625 2 785.408652 1568.80275 NaN NaN NaN NaN NaN NaN NaN 104.62 1 104.62 104.12 105.12 0 0 0 0 0.22632 1 20560 20560 0.094841 0.094841 1 + 14724 25026 9627 9630 14805 14805 0.041101482456042504 FFYYYYTLSFR 11 Unmodified _FFYYYYTLSFR_ 0 0 0 L1PA3_dup1120|chr2:110351377-110353837:-|1.852683732690941|0.4358200479832063|2.09|470.0|76|1|anti-sense;L1PA3_dup1115|chr2:110017555-110020014:+|1.763195504976095|0.4680770941019235|1.91|454.0|76|1|anti-sense L1PA3_dup1120|chr2:110351377-110353837:-|1.852683732690941|0.4358200479832063|2.09|470.0|76|1|anti-sense L1PA3_dup1120|chr2:110351377-110353837:-|1.852683732690941|0.4358200479832063|2.09|470.0|76|1|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6841430664062 3 523.918611 1568.734 -0.12765 -6.6876E-05 -1.0016 -0.00052477 -1.1293 -0.00059165 524.2522252954562 141 0.17735 136.35 136.19 136.37 -4.6493 6 4 2 0 0 0 0.96218 1 27838 27838 1.2148 0.88556 1 1983500 14725 12044 9628 9631 14806 14806 -0.027615160541245132 FGAKKKKKKKK 11 Unmodified _FGAKKKKKKKK_ 0 0 0 ENST00000406961.5_1_2:24991338-24991476:+|nuORF ENST00000406961.5_1_2:24991338-24991476:+|nuORF ENST00000406961.5_1_2:24991338-24991476:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 659.958251953125 2 659.955907 1317.89726 NaN NaN NaN NaN NaN NaN NaN 177.2 1 172.32 171.82 172.82 -4.8739 0 0 0 0.22632 1 35261 35261 0.026206 0.026206 1 14726 9548 9629 9632 14807 14807 0.2510275157824253 FGCSCTSG 8 Unmodified _FGCSCTSG_ 0 0 0 ENST00000478793.1_1_3:113666916-113667543:+|nuORF;ENST00000498275.5_1_3:113666916-113667668:+|nuORF ENST00000478793.1_1_3:113666916-113667543:+|nuORF ENST00000478793.1_1_3:113666916-113667543:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.1212463378906 2 381.133282 760.25201 NaN NaN NaN NaN NaN NaN NaN 7.1582 1 6.1434 5.6434 6.6434 -1.0148 0 0 0 0.21486 1 551 551 0.69038 0 1 14727 10328 9630 9633 14808 14808 -0.1377056255377056 FGDLDRHAR 9 Unmodified _FGDLDRHAR_ 0 0 0 REV__nc|ENSG00000088836|Q8NBS3-4|SLC4A11 REV__nc|ENSG00000088836|Q8NBS3-4|SLC4A11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7780151367188 2 543.775597 1085.53664 NaN NaN NaN NaN NaN NaN NaN 75.141 1 71.419 70.919 71.919 -3.7227 0 0 0 0.20155 1 14207 14207 23.148 6.2061 1 + 14728 23962 9631 9634 14809 14809 -0.002706777535195215 FGEEKRGP 8 Unmodified _FGEEKRGP_ 0 0 0 REV__nc|ENSG00000170037|Q8N137-5|CNTROB REV__nc|ENSG00000170037|Q8N137-5|CNTROB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353820800781 2 460.235242 918.45593 -0.083138 -3.8263E-05 0.47573 0.00021895 0.3926 0.00018069 460.2354240916621 44.341 0.7928 41.575 41.008 41.801 -2.7661 38 22 2 0 0 0 0.52597 1 8016 8016 26.884 1.4843 1 1156800 + 14729 24160 9632 9635 14810 14810 -0.006559587964261482 FGEEKRGP 8 Unmodified _FGEEKRGP_ 0 0 0 REV__nc|ENSG00000170037|Q8N137-5|CNTROB REV__nc|ENSG00000170037|Q8N137-5|CNTROB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2486877441406 2 460.235242 918.45593 -0.080304 -3.6959E-05 0.34312 0.00015792 0.26282 0.00012096 460.23538480978965 44.307 0.83736 41.56 41.08 41.917 -2.7475 41 23 2 0 0 0 0.68128 1 8032 8032 16.942 1.0951 1 1502300 + 14730 24160 9632 9635 14811 14811 -0.006559587964261482 FGEEKRGP 8 Unmodified _FGEEKRGP_ 0 0 0 REV__nc|ENSG00000170037|Q8N137-5|CNTROB REV__nc|ENSG00000170037|Q8N137-5|CNTROB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2346496582031 2 460.235242 918.45593 -0.086344 -3.9739E-05 0.32173 0.00014807 0.23538 0.00010833 460.23554159284356 48.42 0.662 45.471 45.226 45.888 -2.9499 38 18 3 0 0 0 0.70613 1 8843 8843 13.508 0.97634 1 1488000 + 14731 24160 9632 9635 14812 14812 -0.006559587964261482 FGERCHCE 8 Unmodified _FGERCHCE_ 0 0 0 REV__ENSG00000146197|ENST00000274938|SCUBE3 REV__ENSG00000146197|ENST00000274938|SCUBE3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25823974609375 2 490.689287 979.36402 NaN NaN NaN NaN NaN NaN NaN 128.33 1 123.7 123.2 124.2 -4.6292 0 0 0 0.23782 1 25303 25303 0.0082765 0 1 + 14732 16874 9633 9636 14813 14813 -0.12648708476774573 FGETRFSL 8 Unmodified _FGETRFSL_ 0 0 0 ENST00000587406.5_1_19:19230741-19232328:-|nuORF;nc|ENSG00000064545|Q9NX61-2|TMEM161A;ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A ENST00000587406.5_1_19:19230741-19232328:-|nuORF ENST00000587406.5_1_19:19230741-19232328:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7380676269531 2 478.745442 955.476331 NaN NaN NaN NaN NaN NaN NaN 67.405 1 67.405 66.905 67.905 0 0 0 0 0.17344 1 13028 13028 34.102 1.9855 1 14733 1336 9634 9637 14814 14814 -0.003187881366102374 FGFCCCFC 8 Unmodified _FGFCCCFC_ 0 0 0 REV__ENST00000560400.1_1_17:40007277-40007520:-|nuORF REV__ENST00000560400.1_1_17:40007277-40007520:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.250244140625 2 465.144281 928.274008 NaN NaN NaN NaN NaN NaN NaN 97.055 1 97.055 96.555 97.555 0 0 0 0 0.2396 1 19017 19017 0.0082765 0 1 + 14734 23040 9635 9638 14815 14815 -0.19299797401208707 FGFCCCFC 8 Unmodified _FGFCCCFC_ 0 0 0 REV__ENST00000560400.1_1_17:40007277-40007520:-|nuORF REV__ENST00000560400.1_1_17:40007277-40007520:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2476501464844 2 465.144281 928.274008 NaN NaN NaN NaN NaN NaN NaN 134.75 1 130.11 129.61 130.61 -4.6399 0 0 0 0.21486 1 26574 26574 2.8892 0.31174 1 + 14735 23040 9635 9638 14816 14816 -0.19299797401208707 FGFKLRAKK 9 Unmodified _FGFKLRAKK_ 0 0 0 REV__ENST00000504447.1_1_5:147812919-147813335:+|nuORF REV__ENST00000504447.1_1_5:147812919-147813335:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7869262695312 2 547.845294 1093.67603 NaN NaN NaN NaN NaN NaN NaN 9.087 1 8.0523 7.5523 8.5523 -1.0347 0 0 0 0.23508 1 899 899 0.6015 0.6015 1 + 14736 22461 9636 9639 14817 14817 0.13294311601794107 FGFVFKGSKY 10 Unmodified _FGFVFKGSKY_ 0 0 0 REV__UBE2M|p.S79G|1|0.29|ENSG00000130725|chr19:58556900-58556900|T/C|missense_variant REV__UBE2M|p.S79G|1|0.29|ENSG00000130725|chr19:58556900-58556900|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.271240234375 2 590.313492 1178.61243 0.24196 0.00014283 -0.5861 -0.00034598 -0.34414 -0.00020315 590.3116016759079 136.8 0.13889 131.97 131.9 132.04 -4.8345 5 3 2 0 0 0 0.74842 1 26363 26363 6.2058 0 1 1067200 + 14737 25510 9637 9640 14818 14818 0.030269063740661295 FGGGPGTS 8 Unmodified _FGGGPGTS_ 0 0 0 nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO;ENSG00000067445|ENST00000173898|TRO;TRO|p.G1258A|1|0.23|ENSG00000067445|chrX:54930497-54930497|G/C|missense_variant;ENST00000492706.5_1_X:54953428-54957450:+|nuORF nc|ENSG00000067445|Q12816-3|TRO nc|ENSG00000067445|Q12816-3|TRO MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.1639404296875 2 340.155929 678.297304 NaN NaN NaN NaN NaN NaN NaN 111.53 1 111.53 111.03 112.03 0 0 0 0 0.21486 1 21940 21940 2.3027 1.6124 1 14738 1390 9638 9641 14819 14819 -0.05471252704717244 FGGHIRSV 8 Unmodified _FGGHIRSV_ 0 0 0 ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10 ENSG00000103194|ENST00000219473|USP10 ENSG00000103194|ENST00000219473|USP10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.228271484375 2 436.740494 871.466435 0.4716 0.00020596 -0.26916 -0.00011755 0.20244 8.8412E-05 436.7402392813055 81.372 0.58783 81.372 81.162 81.75 0 37 16 3 0 0 0 8448 1 15887 15887 51.63 38.015 1 3260600 14739 2172 9639 9642 14820 14820 0.02556068648652854 FGGHIRSV 8 Unmodified _FGGHIRSV_ 0 0 0 ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10 ENSG00000103194|ENST00000219473|USP10 ENSG00000103194|ENST00000219473|USP10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21685791015625 2 436.740494 871.466435 -0.17001 -7.425E-05 0.1421 6.206E-05 -0.027912 -1.219E-05 436.74053433973245 84.978 0.68988 81.314 80.917 81.606 -3.6641 40 19 3 0 0 0 0.044961 2 16599 16599;16651 103.75 32.615 1 4316400 14740 2172 9639 9642 14821;14822 14821 0.02556068648652854 FGGHIRSV 8 Unmodified _FGGHIRSV_ 0 0 0 ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10 ENSG00000103194|ENST00000219473|USP10 ENSG00000103194|ENST00000219473|USP10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156066894531 2 436.740494 871.466435 0.16448 7.1833E-05 -0.11704 -5.1114E-05 0.047441 2.0719E-05 436.7403396619934 85.122 0.62294 81.212 80.944 81.567 -3.9093 35 17 3 0 0 0 0.13811 1 16166 16166 62.573 18.714 1 2428100 14741 2172 9639 9642 14823 14823 0.02556068648652854 FGGHIRSV 8 Unmodified _FGGHIRSV_ 0 0 0 ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10 ENSG00000103194|ENST00000219473|USP10 ENSG00000103194|ENST00000219473|USP10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21685791015625 2 436.740494 871.466435 -0.17133 -7.4825E-05 0.26367 0.00011515 0.092343 4.033E-05 436.74055236449306 84.936 0.69283 81.225 80.905 81.598 -3.7117 38 19 3 0 0 0 0.037024 4 16244 16196;16205;16244;16271 92.491 41.701 1 3704700 14742 2172 9639 9642 14824;14825;14826;14827 14826 0.02556068648652854 FGHLGETL 8 Unmodified _FGHLGETL_ 0 0 0 REV__SOD1|p.K37Q|1|0.18|ENSG00000142168|chr21:31663826-31663826|A/C|missense_variant REV__SOD1|p.K37Q|1|0.18|ENSG00000142168|chr21:31663826-31663826|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2160949707031 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 85.252 1 81.541 81.041 82.041 -3.7117 0 0 0 0.21486 1 16287 16287 10.183 0 1 + 14743 16656 9640 9643 14828 14828 -0.0021045968237558554 FGHTEGVLG 9 Unmodified _FGHTEGVLG_ 0 0 0 REV__nc|ENSG00000174332|Q8NBF1|GLIS1 REV__nc|ENSG00000174332|Q8NBF1|GLIS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.145751953125 3 306.15562 915.445031 NaN NaN NaN NaN NaN NaN NaN 101.78 1 101.78 101.28 102.28 0 0 0 0 0.23508 1 19985 19985 1.1933 0.735 1 + 14744 18406 9641 9644 14829 14829 -0.0160736117070428 FGHYDHAP 8 Unmodified _FGHYDHAP_ 0 0 0 REV__ENSG00000105755|ENST00000292147|ETHE1 REV__ENSG00000105755|ENST00000292147|ETHE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.13446044921875 3 315.140082 942.398415 NaN NaN NaN NaN NaN NaN NaN 108.32 1 108.32 107.82 108.82 0 0 0 0 0.21486 1 21303 21303 1.6526 0.17072 1 + 14745 15017 9642 9645 14830 14830 -0.07508801002006749 FGIMGLYK 8 Unmodified _FGIMGLYK_ 0 0 0 ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17 ENST00000447566.5_1_22:41166840-41215302:-|nuORF ENST00000447566.5_1_22:41166840-41215302:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.17047119140625 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 139.15 1 134.51 134.01 135.01 -4.6439 0 0 0 0.21486 1 27471 27471 1.6526 0 1 14746 1965 9643 9646 14831 14831 0.02216532002069016 FGIMGLYK 8 Unmodified _FGIMGLYK_ 0 0 0 ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17 ENST00000447566.5_1_22:41166840-41215302:-|nuORF ENST00000447566.5_1_22:41166840-41215302:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1699523925781 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 5.9399 1 4.931 4.431 5.431 -1.0089 0 0 0 0.21486 1 329 329 0.45834 0 1 14747 1965 9643 9646 14832 14832 0.02216532002069016 FGIMGLYK 8 Unmodified _FGIMGLYK_ 0 0 0 ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17 ENST00000447566.5_1_22:41166840-41215302:-|nuORF ENST00000447566.5_1_22:41166840-41215302:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.170654296875 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 42.005 1 39.399 38.899 39.899 -2.606 0 0 0 0.21486 1 7546 7546 6.7232 0 1 14748 1965 9643 9646 14833 14833 0.02216532002069016 FGKGCEECKFP 11 Unmodified _FGKGCEECKFP_ 0 0 0 REV__ENST00000591551.1_1_19:44610541-44612434:+|nuORF REV__ENST00000591551.1_1_19:44610541-44612434:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.77734375 2 622.775559 1243.53657 NaN NaN NaN NaN NaN NaN NaN 14.885 1 13.771 13.271 14.271 -1.1142 0 0 0 0.23698 1 2261 2261 1.1933 0.59184 1 + 14749 19905 9644 9647 14834 14834 -0.07546181860061552 FGLKRFERA 9 Unmodified _FGLKRFERA_ 0 0 0 REV__nc|ENSG00000102890|Q96BJ8-2|ELMO3 REV__nc|ENSG00000102890|Q96BJ8-2|ELMO3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.215576171875 3 375.217214 1122.62981 NaN NaN NaN NaN NaN NaN NaN 109.45 1 105.27 104.77 105.77 -4.1826 0 0 0 0.19651 1 21063 21063 0.12781 0 1 + 14750 14850 9645 9648 14835 14835 0.07340246699709496 FGLQKLWEWC 10 Unmodified _FGLQKLWEWC_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2281494140625 3 437.218115 1308.63251 NaN NaN NaN NaN NaN NaN NaN 121.98 1 117.43 116.93 117.93 -4.5476 0 0 0 2.8426 1 24041 24041 0.043787 0 1 14751 2479 9646 9649 14836 14836 -0.009456659576471793 FGMDDDSEESE 11 Unmodified _FGMDDDSEESE_ 0 0 0 REV__ENST00000470649.1_2_17:15948127-15948268:+|nuORF REV__ENST00000470649.1_2_17:15948127-15948268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 420.837890625 3 420.811807 1259.41359 NaN NaN NaN NaN NaN NaN NaN 8.5175 1 7.7233 7.2233 8.2233 -0.79424 0 0 0 0.22632 1 893 893 0 0 1 + 14752 16414 9647 9650 14837 14837 -0.20573811568328892 FGPDLHGPIEA 11 Unmodified _FGPDLHGPIEA_ 0 0 0 REV__nc|ENSG00000152242|Q96B23-2|ARK2N REV__nc|ENSG00000152242|Q96B23-2|ARK2N MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.33935546875 2 576.787838 1151.56112 0.052257 3.0141E-05 0.017198 9.9193E-06 0.069454 4.006E-05 576.7876493886664 100.91 0.48244 96.754 96.461 96.943 -4.1594 29 13 3 0 0 0 0.83822 1 19813 19813 19.362 2.7961 1 2837300 + 14753 24101 9648 9651 14838 14838 -0.008594623906674315 FGPDLHGPIEA 11 Unmodified _FGPDLHGPIEA_ 0 0 0 REV__nc|ENSG00000152242|Q96B23-2|ARK2N REV__nc|ENSG00000152242|Q96B23-2|ARK2N MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.787838 1151.56112 0.4116 0.00023741 -1.2601 -0.00072683 -0.84853 -0.00048942 576.7869595235653 100.86 0.51705 96.567 96.362 96.88 -4.297 -0.092504 -0.00066103 NaN 24.991 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2276100 + 14754 24101 9648 9651 -0.008594623906674315 FGPDLHGPIEA 11 Unmodified _FGPDLHGPIEA_ 0 0 0 REV__nc|ENSG00000152242|Q96B23-2|ARK2N REV__nc|ENSG00000152242|Q96B23-2|ARK2N MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.787838 1151.56112 0.34809 0.00020077 -0.70764 -0.00040816 -0.35955 -0.00020739 576.78726690769 100.66 0.41192 96.669 96.414 96.826 -3.9895 0.0099605 -2.3682E-05 NaN 24.991 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2032300 + 14755 24101 9648 9651 -0.008594623906674315 FGPPCHCL 8 Unmodified _FGPPCHCL_ 0 0 0 REV__nc|ENSG00000148204|Q5IJ48-2|CRB2 REV__nc|ENSG00000148204|Q5IJ48-2|CRB2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2172546386719 2 437.190934 872.367315 NaN NaN NaN NaN NaN NaN NaN 70.609 1 67.029 66.529 67.529 -3.5798 0 0 0 0.21486 1 13310 13310 6.3541 0 1 + 14756 16964 9649 9652 14839 14839 -0.07397413632111238 FGRGKKREY 9 Unmodified _FGRGKKREY_ 0 0 0 REV__ENSG00000100294|ENST00000290429|MCAT REV__ENSG00000100294|ENST00000290429|MCAT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2103576660156 3 380.880602 1139.61998 -0.07286 -2.7751E-05 -0.65747 -0.00025042 -0.73033 -0.00027817 380.88020890491623 36.951 0.55651 36.951 36.704 37.261 0 32 15 3 0 0 0 0.79239 1 6785 6785 2.086 2.086 1 1385700 + 14757 14686 9650 9653 14840 14840 0.055750586943076996 FGRIYSRRP 9 Unmodified _FGRIYSRRP_ 0 0 0 REV__ENST00000508628.6_1_17:78247091-78252612:+|nuORF REV__ENST00000508628.6_1_17:78247091-78252612:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.331787109375 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 122.66 1 117.93 117.43 118.43 -4.731 0 0 0 0.19711 1 23558 23558 0.40827 0 1 + 14758 22514 9651 9654 14841 14841 0.06666764931219404 FGRRKKQK 8 Unmodified _FGRRKKQK_ 0 0 0 REV__tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1 REV__tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 350.16778564453125 3 349.88932 1046.64613 -0.28152 -9.85E-05 0.2067 7.2323E-05 -0.074814 -2.6177E-05 349.88937283801687 23.629 1.039 23.629 22.788 23.827 0 50 29 3 0 0 0 0.88669 1 3902 3902 1.4551 0 1 1175800 + 14759 25474 9652 9655 14842 14842 0.12467372656442421 FGRRLRLLKGR 11 Unmodified _FGRRLRLLKGR_ 0 0 0 REV__ENST00000261023.7_2_2:187454800-187466828:+|nuORF REV__ENST00000261023.7_2_2:187454800-187466828:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 686.4432983398438 2 686.444029 1370.87351 NaN NaN NaN NaN NaN NaN NaN 175.59 1 170.72 170.22 171.22 -4.8739 0 0 0 0.22632 1 34920 34920 0.00056442 0 1 + 14760 20165 9653 9656 14843 14843 0.20290330864418138 FGRYDNLLPSE 11 Unmodified _FGRYDNLLPSE_ 0 0 0 REV__ENSG00000203950|ENST00000370775|RTL8A REV__ENSG00000203950|ENST00000370775|RTL8A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21844482421875 3 437.550698 1309.63027 -0.12381 -5.4172E-05 0.12534 5.4843E-05 0.0015329 6.7071E-07 437.5506654049202 41.475 1.2708 38.986 38.386 39.657 -2.4896 31 14 3 0 0 0 0.80216 1 7547 7547 3.3557 0.51244 1 1964400 + 14761 16219 9654 9657 14844 14844 -0.012164231617589394 FGSAGTVE 8 Unmodified _FGSAGTVE_ 0 0 0 REV__ENST00000476112.1_1_10:115613555-115614069:-|nuORF REV__ENST00000476112.1_1_10:115613555-115614069:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 384.20074462890625 2 384.182143 766.349734 NaN NaN NaN NaN NaN NaN NaN 65.525 1 62.067 61.567 62.567 -3.4581 0 0 0 0.23487 1 12264 12264 1.7423 0 1 + 14762 22104 9655 9658 14845 14845 -0.04278714361760194 FGSAMEKRQA 10 Unmodified _FGSAMEKRQA_ 0 0 0 REV__nc|ENSG00000125505|Q96N66-3|MBOAT7 REV__nc|ENSG00000125505|Q96N66-3|MBOAT7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2150573730469 3 375.522086 1123.54443 -1.9036 -0.00071483 -1.5545 -0.00058376 -3.4581 -0.0012986 375.52158008508957 18.061 0.20948 16.546 16.435 16.645 -1.5148 8 5 2 0 0 0 1.1344 1 2647 2647 0.69767 0.69767 1 307640 + 14763 15820 9656 9659 14846 14846 -0.012402865482727066 FGSDCLRH 8 Unmodified _FGSDCLRH_ 0 0 0 REV__ENST00000480321.1_1_13:113698905-113699130:+|nuORF REV__ENST00000480321.1_1_13:113698905-113699130:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.1443786621094 3 312.144838 933.412685 NaN NaN NaN NaN NaN NaN NaN 91.788 1 87.863 87.363 88.363 -3.9251 0 0 0 0.21486 1 17970 17970 1.6526 0 1 + 14764 22163 9657 9660 14847 14847 -0.056684718453766436 FGSEWFWWYWQ 11 Unmodified _FGSEWFWWYWQ_ 0 0 0 nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;FUCA2|p.I367Mfs*27|1|0.31|ENSG00000001036|chr6:143501982-143501985|ATAA/-|frameshift_variant;ENSG00000001036|ENST00000002165|FUCA2 nc|ENSG00000001036|Q9BTY2-2|FUCA2 nc|ENSG00000001036|Q9BTY2-2|FUCA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.37060546875 2 811.348594 1620.68264 NaN NaN NaN NaN NaN NaN NaN 169.39 1 169.39 168.89 169.89 0 0 0 0 0.22632 1 34764 34764 0 0 1 14765 952 9658 9661 14848 14848 -0.1028784002814973 FGTAKFVF 8 Unmodified _FGTAKFVF_ 0 0 0 REV__ENSG00000180919|ENST00000316529|OR56B4 REV__ENSG00000180919|ENST00000316529|OR56B4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.1336975097656 3 306.16909 915.485439 NaN NaN NaN NaN NaN NaN NaN 108.24 1 108.24 107.74 108.74 0 0 0 0 0.21486 1 21285 21285 1.6526 0 1 + 14766 18705 9659 9662 14849 14849 0.024316052197150384 FGTPKNQAF 9 Unmodified _FGTPKNQAF_ 0 0 0 REV__nc|ENSG00000110713|P52948-6|NUP98 REV__nc|ENSG00000110713|P52948-6|NUP98 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.23345947265625 3 337.174903 1008.50288 NaN NaN NaN NaN NaN NaN NaN 95.088 1 91.038 90.538 91.538 -4.0496 0 0 0 0.23508 1 18636 18636 1.1933 0 1 + 14767 15212 9660 9663 14850 14850 -0.0010309924529110503 FGVRQKWDQKS 11 Unmodified _FGVRQKWDQKS_ 0 0 0 ENSG00000100353|ENST00000216190|EIF3D;nc|ENSG00000100353|O15371-2|EIF3D ENSG00000100353|ENST00000216190|EIF3D ENSG00000100353|ENST00000216190|EIF3D MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2443542480469 3 460.245721 1377.71533 NaN NaN NaN NaN NaN NaN NaN 88.297 1 84.302 83.802 84.802 -3.9953 0 0 0 0.22632 1 16817 16817 0.58532 0.54153 1 14768 1962 9661 9664 14851 14851 0.041583670947147766 FHCFSPIAF 9 Unmodified _FHCFSPIAF_ 0 0 0 REV__ENSG00000169071|ENST00000375708|ROR2 REV__ENSG00000169071|ENST00000375708|ROR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.1976013183594 3 356.837234 1067.48987 -0.29022 -0.00010356 -3.374 -0.001204 -3.6642 -0.0013075 357.1713358127779 19.909 0.30866 19.909 19.791 20.1 0 13 8 2 0 0 0 0.8825 1 3270 3270 1.0715 0.61312 1 322270 + 14769 18075 9662 9665 14852 14852 -0.04117253629033257 FHEGQEIP 8 Unmodified _FHEGQEIP_ 0 0 0 MADD|p.P781Lfs*34|1|0.43|ENSG00000110514|chr11:47285118-47285118|T/-|frameshift_variant;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD MADD|p.P781Lfs*34|1|0.43|ENSG00000110514|chr11:47285118-47285118|T/-|frameshift_variant MADD|p.P781Lfs*34|1|0.43|ENSG00000110514|chr11:47285118-47285118|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7213134765625 2 478.727249 955.439946 0.005593 2.6775E-06 0.97448 0.00046651 0.98008 0.00046919 478.7283023339539 82.519 0.73528 78.911 78.531 79.266 -3.6079 28 20 2 0 0 0 0.71273 1 16196 16196 12.532 0 1 1157000 14770 2579 9663 9666 14853 14853 -0.03955665033333844 FHENCYRYE 9 Unmodified _FHENCYRYE_ 0 0 0 ENST00000312173.5_1_11:46164605-46165142:+|nuORF ENST00000312173.5_1_11:46164605-46165142:+|nuORF ENST00000312173.5_1_11:46164605-46165142:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7582397460938 2 630.758755 1259.50296 NaN NaN NaN NaN NaN NaN NaN 107.74 1 103.61 103.11 104.11 -4.135 0 0 0 0.19626 1 20727 20727 0.073264 0.029476 1 14771 8656 9664 9667 14854 14854 -0.11641467307617859 FHENCYRYE 9 Unmodified _FHENCYRYE_ 0 0 0 ENST00000312173.5_1_11:46164605-46165142:+|nuORF ENST00000312173.5_1_11:46164605-46165142:+|nuORF ENST00000312173.5_1_11:46164605-46165142:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.758056640625 2 630.758755 1259.50296 NaN NaN NaN NaN NaN NaN NaN 134.71 1 129.89 129.39 130.39 -4.8175 0 0 0 0.1963 1 25934 25934 0.073264 0.071882 1 14772 8656 9664 9667 14855 14855 -0.11641467307617859 FHFDYPRL 8 Unmodified _FHFDYPRL_ 0 0 0 nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF;ENSG00000197136|ENST00000355703|PCNX3 nc|ENSG00000197136|Q9H6A9-3|PCNX3 nc|ENSG00000197136|Q9H6A9-3|PCNX3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7763671875 2 547.774534 1093.53451 NaN NaN NaN NaN NaN NaN NaN 54.933 1 52.049 51.549 52.549 -2.8837 0 0 0 0.21039 1 10496 10496 16.942 0 1 14773 7333 9665 9668 14856 14856 -0.008511064913591326 FHGVGPPY 8 Unmodified _FHGVGPPY_ 0 0 0 REV__nc|ENSG00000186510|P51800-2|CLCNKA REV__nc|ENSG00000186510|P51800-2|CLCNKA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2154541015625 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 176.43 1 171.56 171.06 172.06 -4.8739 0 0 0 0.21486 1 35097 35097 0.79363 0 1 + 14774 19036 9666 9669 14857 14857 -0.023224249912459527 FHILGLGVQPA 11 Unmodified _FHILGLGVQPA_ 0 0 0 REV__ENST00000489483.5_1_3:48669285-48669498:-|nuORF REV__ENST00000489483.5_1_3:48669285-48669498:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3331298828125 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 153.34 1 148.07 147.57 148.57 -5.2669 0 0 0 0.22632 1 29723 29723 0.172 0 1 + 14775 21848 9667 9670 14858 14858 0.080579976396848 FHPGDTVPS 9 Unmodified _FHPGDTVPS_ 0 0 0 nc|ENSG00000106565|Q3YBM2-2|TMEM176B;ENSG00000106565|ENST00000326442|TMEM176B nc|ENSG00000106565|Q3YBM2-2|TMEM176B nc|ENSG00000106565|Q3YBM2-2|TMEM176B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7293395996094 2 478.727249 955.439946 0.005593 2.6775E-06 0.97448 0.00046651 0.98008 0.00046919 478.7283023339539 82.519 0.73528 78.911 78.531 79.266 -3.6079 28 20 2 0 0 0 0.67531 1 16082 16082 7.9102 0 1 1157000 14776 2390 9668 9671 14859 14859 -0.03955665033322475 FHREMENMD 9 Unmodified _FHREMENMD_ 0 0 0 REV__nc|ENSG00000163249|Q8N7R7-2|CCNYL1 REV__nc|ENSG00000163249|Q8N7R7-2|CCNYL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 303.13006591796875 4 302.876033 1207.47503 -2.2946 -0.00069497 -0.33223 -0.00010062 -2.6268 -0.00079559 303.12613762587216 7.0591 1.2516 6.0442 5.5175 6.7691 -1.0148 49 35 2 0 0 0 0.83274 1 445 445 0.26902 0 1 279320 + 14777 17555 9669 9672 14860 14860 -0.12041113559325822 FHRHLWGK 8 Unmodified _FHRHLWGK_ 0 0 0 REV__sp|Q6SVZ5|US11_HCMVMMembraneglycoproteinUS11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US11PE=2SV=1 REV__sp|Q6SVZ5|US11_HCMVMMembraneglycoproteinUS11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US11PE=2SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2598266601562 2 540.796135 1079.57772 0.17381 9.3994E-05 -0.27444 -0.00014842 -0.10064 -5.4424E-05 540.7958724603379 14.09 0.146 14.09 14 14.146 0 6 3 2 0 0 0 0.79017 1 2081 2081 4.756 0 1 440860 + 14778 24705 9670 9673 14861 14861 0.041111280766017444 FHRHPGVPP 9 Unmodified _FHRHPGVPP_ 0 0 0 REV__IQSEC2|p.Q1376Sfs*21|1|0.15|ENSG00000124313|chrX:53234560-53234560|G/-|frameshift_variant REV__IQSEC2|p.Q1376Sfs*21|1|0.15|ENSG00000124313|chrX:53234560-53234560|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.263427734375 2 522.280318 1042.54608 NaN NaN NaN NaN NaN NaN NaN 96.749 1 92.651 92.151 93.151 -4.0978 0 0 0 0.19652 1 18977 18977 0.40827 0.14288 1 + 14779 15773 9671 9674 14862 14862 0.02651135322639675 FHRHTHLNEHR 11 Unmodified _FHRHTHLNEHR_ 0 0 0 ZNF473|p.F545Lfs*2|1|0.3|ENSG00000142528|chr19:50046073-50046073|T/-|frameshift_variant;ZNF473|p.H533Rfs*30|1|0.46|ENSG00000142528|chr19:50046040-50046041|CA/-|frameshift_variant;ZNF473|p.D680Efs*13|1|0.22|ENSG00000142528|chr19:50046482-50046483|AC/-|frameshift_variant;ENSG00000142528|ENST00000270617|ZNF473 ZNF473|p.F545Lfs*2|1|0.3|ENSG00000142528|chr19:50046073-50046073|T/-|frameshift_variant ZNF473|p.F545Lfs*2|1|0.3|ENSG00000142528|chr19:50046073-50046073|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3718872070312 2 742.374332 1482.73411 NaN NaN NaN NaN NaN NaN NaN 115.53 1 111.06 110.56 111.56 -4.4726 0 0 0 0.23698 1 22774 22774 2.2828 0.63015 1 14780 4423 9672 9675 14863 14863 0.012053415091259012 FHRPCEMC 8 Unmodified _FHRPCEMC_ 0 0 0 REV__TLR9|p.G719Afs*37|1|0.18|ENSG00000239732|chr3:52222162-52222162|G/-|frameshift_variant REV__TLR9|p.G719Afs*37|1|0.18|ENSG00000239732|chr3:52222162-52222162|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.1600036621094 3 341.47168 1021.39321 -0.11471 -3.917E-05 1.2055 0.00041164 1.0908 0.00037247 341.47212770741123 124.33 0.20957 119.75 119.66 119.87 -4.5757 8 5 2 0 0 0 1.028 1 24524 24524 0.45834 0.45834 1 786330 + 14781 19776 9673 9676 14864 14864 -0.11662887452132509 FHSATDRS 8 Unmodified _FHSATDRS_ 0 0 0 REV__ENST00000399206.4_1_14:50472885-50473008:-|nuORF REV__ENST00000399206.4_1_14:50472885-50473008:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.7098083496094 2 460.714673 919.414794 -0.44804 -0.00020642 0.63767 0.00029378 0.18963 8.7366E-05 460.71410753834255 37.829 0.42072 35.361 35.017 35.438 -2.4688 20 11 3 0 0 0 8448 1 6934 6934 0.0082765 0 1 613780 + 14782 21340 9674 9677 14865 14865 -0.048137198358972455 FHSSPRSV 8 Unmodified _FHSSPRSV_ 0 0 0 REV__ENST00000566581.5_1_15:34656183-34657316:-|nuORF REV__ENST00000566581.5_1_15:34656183-34657316:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.239013671875 2 458.735409 915.456264 0.50287 0.00023068 -1.1172 -0.00051248 -0.61429 -0.0002818 458.73467123657844 82.23 0.43341 82.23 81.963 82.396 0 16 11 2 0 0 0 0.81042 1 16041 16041 30.225 13.283 1 894130 + 14783 23122 9675 9678 14866 14866 -0.004845390765694901 FHTYTWFRKRR 11 Unmodified _FHTYTWFRKRR_ 0 0 0 RGS18|p.H26Lfs*22|1|0.04|ENSG00000150681|chr1:192158709-192158710|-/ATACTATTCCATACAT|frameshift_variant RGS18|p.H26Lfs*22|1|0.04|ENSG00000150681|chr1:192158709-192158710|-/ATACTATTCCATACAT|frameshift_variant RGS18|p.H26Lfs*22|1|0.04|ENSG00000150681|chr1:192158709-192158710|-/ATACTATTCCATACAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2796020507812 3 533.288143 1596.8426 NaN NaN NaN NaN NaN NaN NaN 23.197 1 21.409 20.909 21.909 -1.7886 0 0 0 0.22632 1 3721 3721 0.094841 0 1 14784 25607 9676 9679 14867 14867 0.06805132759518528 FHVQKHKLL 9 Unmodified _FHVQKHKLL_ 0 0 0 REV__ENST00000472914.6_1_6:99936675-99951661:-|nuORF REV__ENST00000472914.6_1_6:99936675-99951661:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 383.8648376464844 3 383.901226 1148.68185 NaN NaN NaN NaN NaN NaN NaN 9.3384 1 8.2739 7.7739 8.7739 -1.0645 0 0 0 0.23508 1 990 990 0.26902 0.1097 1 + 14785 22063 9677 9680 14868 14868 0.11345410113472099 FHVYWITE 8 Unmodified _FHVYWITE_ 0 0 0 REV__ATP6V0E2|p.R77H|1|0.41|ENSG00000171130|chr7:149878755-149878755|G/A|missense_variant REV__ATP6V0E2|p.R77H|1|0.41|ENSG00000171130|chr7:149878755-149878755|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7671508789062 2 547.768917 1093.52328 NaN NaN NaN NaN NaN NaN NaN 15.721 1 14.505 14.005 15.005 -1.2159 0 0 0 0.21486 1 2438 2438 2.8892 0.58649 1 + 14786 13153 9678 9681 14869 14869 -0.019739285854711852 FHWREVLWNAV 11 Unmodified _FHWREVLWNAV_ 0 0 0 REV__ENSG00000164169|ENST00000322396|PRMT9 REV__ENSG00000164169|ENST00000322396|PRMT9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 486.2547302246094 3 486.254328 1455.74115 NaN NaN NaN NaN NaN NaN NaN 61.901 1 58.531 58.031 59.031 -3.3694 0 0 0 0.22632 1 11547 11547 5.4027 0 1 + 14787 17657 9679 9682 14870 14870 0.03151261336984135 FIADSQPCY 9 Unmodified _FIADSQPCY_ 0 0 0 REV__ENSG00000064687|ENST00000263094|ABCA7 REV__ENSG00000064687|ENST00000263094|ABCA7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27783203125 2 522.228768 1042.44298 -0.55502 -0.00028985 1.7973 0.00093859 1.2423 0.00064874 522.2296588860974 35.264 0.69862 33.011 32.497 33.195 -2.2527 25 19 2 0 0 0 0.58804 1 6165 6165 13.906 3.0821 1 1642800 + 14788 14172 9680 9683 14871 14871 -0.07654157970819142 FIAELKEL 8 Unmodified _FIAELKEL_ 0 0 0 REV__tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1 REV__tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78253173828125 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 85.539 1 85.539 85.039 86.039 0 0 0 0 0.18734 1 16694 16694 29.082 3.6823 1 + 14789 25350 9681 9684 14872 14872 0.06612126217100922 FIAFDRGM 8 Unmodified _FIAFDRGM_ 0 0 0 REV__ENSG00000075213|ENST00000265362|SEMA3A REV__ENSG00000075213|ENST00000265362|SEMA3A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7358093261719 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 39.862 1 37.322 36.822 37.822 -2.5398 0 0 0 0.23538 1 7128 7128 0.25148 0 1 + 14790 14326 9682 9685 14873 14873 -0.020938266631105762 FICAKCKG 8 Unmodified _FICAKCKG_ 0 0 0 ENSG00000147174|ENST00000373696|GCNA ENSG00000147174|ENST00000373696|GCNA ENSG00000147174|ENST00000373696|GCNA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 435.24725341796875 2 435.222234 868.429915 NaN NaN NaN NaN NaN NaN NaN 48.78 1 45.773 45.273 46.273 -3.0068 0 0 0 0.23749 1 8932 8932 0.12286 0 1 14791 4690 9683 9686 14874 14874 -0.009562675639131157 FICRAVHEAAS 11 Unmodified _FICRAVHEAAS_ 0 0 0 ENST00000521393.1_1_14:106188133-106188816:-|nuORF;nc|ENSG00000211891|P01854-1|IGHE;nc|ENSG00000211891|P01854-3|IGHE;nc|ENSG00000211891|P01854|IGHE ENST00000521393.1_1_14:106188133-106188816:-|nuORF ENST00000521393.1_1_14:106188133-106188816:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2821655273438 2 602.30059 1202.58663 0.39166 0.0002359 1.971 0.0011871 2.3626 0.001423 602.3017349751108 24.903 0.37531 23.369 23.163 23.538 -1.5342 17 10 2 0 0 0 0.54604 1 4049 4049 8.4443 3.5473 1 791940 14792 10846 9684 9687 14875 14875 -0.006563111398918409 FICTPHLV 8 Unmodified _FICTPHLV_ 0 0 0 REV__DHX34|p.V844I|1|0.5|ENSG00000134815|chr19:47376491-47376491|G/A|missense_variant REV__DHX34|p.V844I|1|0.5|ENSG00000134815|chr19:47376491-47376491|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2486877441406 2 465.249306 928.484059 NaN NaN NaN NaN NaN NaN NaN 153.58 1 148.36 147.86 148.86 -5.2209 0 0 0 0.21486 1 29768 29768 10.183 3.8293 1 + 14793 13677 9685 9688 14876 14876 0.01695647859287419 FIDANQENFY 10 Unmodified _FIDANQENFY_ 0 0 0 REV__tr|U7T3J8|U7T3J8_FUSNUExodeoxyribonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00689PE=3SV=1 REV__tr|U7T3J8|U7T3J8_FUSNUExodeoxyribonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00689PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7772216796875 2 630.78021 1259.54587 NaN NaN NaN NaN NaN NaN NaN 110.19 1 105.74 105.24 106.24 -4.4518 0 0 0 0.22588 1 21146 21146 10.824 2.9138 1 + 14794 25365 9686 9689 14877 14877 -0.07352373978528703 FIDDANYSV 9 Unmodified _FIDDANYSV_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27880859375 2 522.237647 1042.46074 0.48264 0.00025205 -0.47885 -0.00025007 0.003791 1.9798E-06 522.2373304434531 99.773 1.1775 99.773 99.267 100.44 0 96 33 4 0 0 0 7.7434E-05 4 19607 19530;19607;19616;19624 128.37 80.617 1 63587000 14795 5033 9687 9690 14878;14879;14880;14881 14879 -0.05879119444330172 FIDDANYSV 9 Unmodified _FIDDANYSV_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6804809570312 2 522.237647 1042.46074 -0.3976 -0.00020764 0.34543 0.0001804 -0.052174 -2.7247E-05 522.2377660421672 104.29 1.2013 100.07 99.587 100.79 -4.2183 111 34 5 0 0 0 0.28819 3 20506 20468;20506;20534 32.305 13.049 1 91333000 14796 5033 9687 9690 14882;14883;14884 14883 -0.05879119444330172 FIDDANYSV 9 Unmodified _FIDDANYSV_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.280029296875 2 522.237647 1042.46074 -0.53822 -0.00028108 0.58644 0.00030626 0.048217 2.5181E-05 522.2379037161709 104.43 1.0754 100.08 99.655 100.73 -4.346 101 30 5 0 0 0 7.7434E-05 2 19972 19972;20054 128.37 88.416 1 82984000 14797 5033 9687 9690 14885;14886 14885 -0.05879119444330172 FIDDANYSV 9 Unmodified _FIDDANYSV_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2798461914062 2 522.237647 1042.46074 0.74434 0.00038872 -0.67183 -0.00035085 0.072514 3.7869E-05 522.2372358559437 104.05 1.3813 99.999 99.558 100.94 -4.0543 110 38 5 0 0 0 0.0038269 1 19992 19992 128.37 95.58 1 88623000 14798 5033 9687 9690 14887 14887 -0.05879119444330172 FIDEVFEDL 9 Unmodified _FIDEVFEDL_ 0 0 0 REV__C5|p.A1668V|1|0.25|ENSG00000106804|chr9:120952767-120952767|G/A|missense_variant REV__C5|p.A1668V|1|0.25|ENSG00000106804|chr9:120952767-120952767|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.1895446777344 3 376.181612 1125.52301 -0.22302 -8.3894E-05 1.4331 0.0005391 1.2101 0.00045521 376.18205246421934 65.397 1.4949 62.35 61.489 62.984 -3.047 82 43 3 0 0 0 0.26282 1 12606 12606 0.37959 0 1 2039000 + 14799 13226 9688 9691 14888 14888 -0.03473393095987376 FIDEVFEDL 9 Unmodified _FIDEVFEDL_ 0 0 0 REV__C5|p.A1668V|1|0.25|ENSG00000106804|chr9:120952767-120952767|G/A|missense_variant REV__C5|p.A1668V|1|0.25|ENSG00000106804|chr9:120952767-120952767|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 376.181612 1125.52301 -0.22302 -8.3894E-05 1.4331 0.0005391 1.2101 0.00045521 376.18205246421934 65.397 1.4949 62.35 61.489 62.984 -3.047 -0.0044572 0.00040833 NaN 0.37959 82 43 3 NaN NaN NaN NaN 0 NaN NaN 0 2039000 + 14800 13226 9688 9691 -0.03473393095987376 FIDEVFEDL 9 Unmodified _FIDEVFEDL_ 0 0 0 REV__C5|p.A1668V|1|0.25|ENSG00000106804|chr9:120952767-120952767|G/A|missense_variant REV__C5|p.A1668V|1|0.25|ENSG00000106804|chr9:120952767-120952767|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 376.181612 1125.52301 0.24431 9.1906E-05 0.6613 0.00024877 0.90562 0.00034068 376.18177210150304 65.817 1.5735 62.359 61.404 62.978 -3.4581 0.0044572 -0.00046267 NaN 0.37959 62 44 2 NaN NaN NaN NaN 0 NaN NaN 0 1167600 + 14801 13226 9688 9691 -0.03473393095987376 FIDGGGSVLV 10 Unmodified _FIDGGGSVLV_ 0 0 0 ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST ENSG00000244038|ENST00000602624|DDOST ENSG00000244038|ENST00000602624|DDOST MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7652587890625 2 482.260925 962.507297 0.12339 5.9508E-05 0.036648 1.7674E-05 0.16004 7.7182E-05 482.2609518634774 134.88 0.77652 130.06 129.69 130.47 -4.8175 33 21 2 0 0 0 0.48338 1 25968 25968 32.305 0 1 2160600 14802 7877 9689 9692 14889 14889 0.024543651776298248 FIDIMYRCFAY 11 Unmodified _FIDIMYRCFAY_ 0 0 0 REV__TRDN|p.P386Tfs*34|1|0.13|ENSG00000186439|chr6:123382127-123382128|-/T|frameshift_variant REV__TRDN|p.P386Tfs*34|1|0.13|ENSG00000186439|chr6:123382127-123382128|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2359924316406 3 481.226281 1440.65701 -0.1036 -4.9854E-05 -0.76349 -0.00036741 -0.86709 -0.00041726 481.2259315640547 108.74 0.65551 104.29 103.95 104.6 -4.4518 49 18 3 0 0 0 0.79196 1 20833 20833 4.7159 0.30977 1 4733200 + 14803 19031 9690 9693 14890 14890 -0.04568773866435549 FIDKQTNL 8 Unmodified _FIDKQTNL_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25848388671875 2 489.766374 977.518196 -0.1713 -8.3898E-05 -1.2809 -0.00062736 -1.4522 -0.00071126 489.76606971785947 58.024 0.6176 54.819 54.511 55.128 -3.2052 23 17 2 0 0 0 0.16655 2 10806 10806;10820 49.933 4.0731 1 566460 14804 1232 9691 9694 14891;14892 14891 0.028537675519032746 FIERCFLD 8 Unmodified _FIERCFLD_ 0 0 0 REV__ENST00000542058.5_3_12:65141492-65141585:-|nuORF REV__ENST00000542058.5_3_12:65141492-65141585:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2797241210938 2 521.754953 1041.49535 0.59256 0.00030917 -1.9746 -0.0010302 -1.382 -0.00072107 522.2556697030177 102.76 0.72409 102.76 102.45 103.17 0 30 20 2 0 0 0 0.9455 1 20249 20249 16.942 12.613 1 3437900 + 14805 22870 9692 9695 14893 14893 -0.023735748372246235 FIFEWWYFHKH 11 Unmodified _FIFEWWYFHKH_ 0 0 0 ENST00000369669.5_1_1:113140697-113161406:-|nuORF;ENST00000485753.5_1_1:113153424-113159539:-|nuORF;ENST00000497235.5_1_1:113140697-113161735:-|nuORF;ENST00000498383.5_1_1:113153265-113161717:-|nuORF;ENST00000467335.5_1_1:113153424-113161735:-|nuORF;ENST00000479436.5_1_1:113134145-113161558:-|nuORF;ENST00000473206.5_1_1:113149890-113161735:-|nuORF;ENST00000463235.5_1_1:113098633-113162595:-|nuORF;ST7L|p.M420Ifs*18|1|0.1|ENSG00000007341|chr1:112556004-112556005|-/CAAAAGT|frameshift_variant;nc|ENSG00000007341|Q8TDW4-6|ST7L;ST7L|p.A541Cfs*2|1|0.05|ENSG00000007341|chr1:112541959-112541960|-/A|frameshift_variant;nc|ENSG00000007341|Q8TDW4-2|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;nc|ENSG00000007341|Q8TDW4-3|ST7L;ENSG00000007341|ENST00000358039|ST7L ENST00000369669.5_1_1:113140697-113161406:-|nuORF ENST00000369669.5_1_1:113140697-113161406:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7782592773438 3 547.266345 1638.7772 0.13176 7.2107E-05 2.7329 0.0014956 2.8646 0.0015677 547.2688982814999 145.55 0.1678 140.44 140.31 140.48 -5.1108 7 4 2 0 0 0 0.89134 1 28107 28107 0 0 1 2370700 14806 1022 9693 9696 14894 14894 -0.01663281486185042 FIFPPAMLSE 10 Unmodified _FIFPPAMLSE_ 0 0 0 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3197631835938 2 576.293911 1150.57327 NaN NaN NaN NaN NaN NaN NaN 147.01 1 141.9 141.4 142.4 -5.1108 0 0 0 0.22588 1 28442 28442 11.64 0.81637 1 14807 26382 9694 9697 14895 14895 0.004004380281457998 FIFRVKTRRKK 11 Unmodified _FIFRVKTRRKK_ 0 0 0 nc|ENSG00000105492|O43699-6|SIGLEC6;nc|ENSG00000105492|O43699-3|SIGLEC6;ENSG00000105492|ENST00000425629|SIGLEC6 nc|ENSG00000105492|O43699-6|SIGLEC6 nc|ENSG00000105492|O43699-6|SIGLEC6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 494.97882080078125 3 493.652533 1477.93577 0.22219 0.00010968 -0.93405 -0.0004611 -0.71187 -0.00035141 493.6520599751129 156 1.1527 151.22 150.7 151.85 -4.7791 109 32 5 0 0 0 0.66234 1 31002 31002 0.58532 0.31599 1 49481000 14808 2313 9695 9698 14896 14896 0.2159205721275157 FIFRVKTRRKK 11 Unmodified _FIFRVKTRRKK_ 0 0 0 nc|ENSG00000105492|O43699-6|SIGLEC6;nc|ENSG00000105492|O43699-3|SIGLEC6;ENSG00000105492|ENST00000425629|SIGLEC6 nc|ENSG00000105492|O43699-6|SIGLEC6 nc|ENSG00000105492|O43699-6|SIGLEC6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 494.9681091308594 3 493.652533 1477.93577 0.16788 8.2875E-05 -0.83477 -0.00041209 -0.66689 -0.00032921 493.65209181442765 156.74 0.97032 151.46 150.96 151.94 -5.2854 99 27 5 0 0 0 0.66087 1 30431 30431 1.4551 0.94916 1 25301000 14809 2313 9695 9698 14897 14897 0.2159205721275157 FIFTTKGDN 9 Unmodified _FIFTTKGDN_ 0 0 0 REV__ENSG00000197563|ENST00000640252|PIGN REV__ENSG00000197563|ENST00000640252|PIGN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2655029296875 2 521.763832 1041.51311 0.31251 0.00016306 0.14028 7.3195E-05 0.45279 0.00023625 521.7638318979916 109.17 0.55926 109.17 108.77 109.33 0 21 15 2 0 0 0 0.039965 1 21463 21463 2.6312 1.4164 1 1544300 + 14810 19348 9696 9699 14898 14898 -0.00598536310712916 FIFTTKGDN 9 Unmodified _FIFTTKGDN_ 0 0 0 REV__ENSG00000197563|ENST00000640252|PIGN REV__ENSG00000197563|ENST00000640252|PIGN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.264892578125 2 521.763832 1041.51311 -0.35212 -0.00018372 0.91525 0.00047755 0.56314 0.00029382 521.7642402678265 113.62 0.48281 109.17 109.01 109.49 -4.4538 20 13 2 0 0 0 0.064056 1 22421 22421 1.2148 0.53344 1 1968900 + 14811 19348 9696 9699 14899 14899 -0.00598536310712916 FIHDILTEV 9 Unmodified _FIHDILTEV_ 0 0 0 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7960815429688 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 148.93 1 148.93 148.43 149.43 0 0 0 0 0.05839 1 29808 29808 48.346 14.243 1 14812 2694 9697 9700 14900 14900 0.03634609757477847 FIHDILTEV 9 Unmodified _FIHDILTEV_ 0 0 0 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7703857421875 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 149.04 1 149.04 148.54 149.54 0 0 0 0 0.05839 1 29834 29834 48.346 21.462 1 14813 2694 9697 9700 14901 14901 0.03634609757477847 FIHDILTEV 9 Unmodified _FIHDILTEV_ 0 0 0 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7960815429688 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 153.95 1 148.68 148.18 149.18 -5.2669 0 0 0 0.05839 1 29849 29849 48.346 21.462 1 14814 2694 9697 9700 14902 14902 0.03634609757477847 FIHDILTEV 9 Unmodified _FIHDILTEV_ 0 0 0 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7962646484375 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 154.19 1 148.93 148.43 149.43 -5.2669 0 0 0 0.05839 1 29897 29897 48.346 8.3885 1 14815 2694 9697 9700 14903 14903 0.03634609757477847 FIHDILTEV 9 Unmodified _FIHDILTEV_ 0 0 0 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.795166015625 2 543.795132 1085.57571 0.47278 0.00025709 -0.66262 -0.00036033 -0.18985 -0.00010324 543.7947802897844 154.02 0.56015 148.79 148.52 149.08 -5.2209 24 15 2 0 0 0 0.12183 2 29849 29849;29893 48.346 21.462 1 1537700 14816 2694 9697 9700 14904;14905 14904 0.03634609757477847 FIHKDYTY 8 Unmodified _FIHKDYTY_ 0 0 0 REV__nc|ENSG00000115459|Q96FG2-6|ELMOD3 REV__nc|ENSG00000115459|Q96FG2-6|ELMOD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.76953125 2 543.766374 1085.5182 NaN NaN NaN NaN NaN NaN NaN 124.6 1 120.01 119.51 120.51 -4.5984 0 0 0 0.21181 1 24572 24572 15.768 3.2367 1 + 14817 24009 9698 9701 14906 14906 -0.021142324480933894 FIHQEDLPNQ 10 Unmodified _FIHQEDLPNQ_ 0 0 0 REV__nc|ENSG00000174442|Q9H900-2|ZWILCH REV__nc|ENSG00000174442|Q9H900-2|ZWILCH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7798461914062 2 620.801477 1239.5884 0.86945 0.00053976 -1.2903 -0.000801 -0.42081 -0.00026124 620.8006588881952 49.123 0.70013 46.242 45.889 46.59 -2.8811 62 19 4 0 0 0 0.69026 1 9289 9289 19.257 9.8739 1 16437000 + 14818 18414 9699 9702 14907 14907 -0.02180978850287829 FIHQEDLPNQ 10 Unmodified _FIHQEDLPNQ_ 0 0 0 REV__nc|ENSG00000174442|Q9H900-2|ZWILCH REV__nc|ENSG00000174442|Q9H900-2|ZWILCH MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 620.801477 1239.5884 0.72186 0.00044813 -0.96344 -0.0005981 -0.24158 -0.00014997 620.8007644812216 45.953 0.68977 45.953 45.518 46.208 0 -0.19214 -0.00018589 NaN 19.257 60 19 4 NaN NaN NaN NaN 0 NaN NaN 0 10898000 + 14819 18414 9699 9702 -0.02180978850287829 FIHQEDLPNQ 10 Unmodified _FIHQEDLPNQ_ 0 0 0 REV__nc|ENSG00000174442|Q9H900-2|ZWILCH REV__nc|ENSG00000174442|Q9H900-2|ZWILCH MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 620.801477 1239.5884 0.26973 0.00016745 -0.62467 -0.0003878 -0.35494 -0.00022035 620.8009588417999 49.224 0.61777 46.225 45.895 46.513 -2.999 0.079867 0.00023472 NaN 19.257 54 17 4 NaN NaN NaN NaN 0 NaN NaN 0 15067000 + 14820 18414 9699 9702 -0.02180978850287829 FIHQEDLPNQ 10 Unmodified _FIHQEDLPNQ_ 0 0 0 REV__nc|ENSG00000174442|Q9H900-2|ZWILCH REV__nc|ENSG00000174442|Q9H900-2|ZWILCH MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 620.801477 1239.5884 0.11083 6.8801E-05 -0.50486 -0.00031342 -0.39403 -0.00024462 620.8010737848674 49.167 0.66254 46.16 45.864 46.527 -3.0068 0.015195 0.00038348 NaN 19.257 63 18 5 NaN NaN NaN NaN 0 NaN NaN 0 16288000 + 14821 18414 9699 9702 -0.02180978850287829 FIINDKHSL 9 Unmodified _FIINDKHSL_ 0 0 0 REV__ENSG00000114204|ENST00000264677|SERPINI2 REV__ENSG00000114204|ENST00000264677|SERPINI2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7930908203125 2 543.800749 1085.58694 0.63081 0.00034304 -0.5449 -0.00029631 0.085916 4.6721E-05 543.8002782932863 114.25 0.65788 109.94 109.51 110.17 -4.3135 30 18 2 0 0 0 0.36931 1 21922 21922 27.629 7.1752 1 2669600 + 14822 15366 9700 9703 14908 14908 0.04757431851612637 FIITNETLD 9 Unmodified _FIITNETLD_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2779541015625 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 155.04 1 155.04 154.54 155.54 0 0 0 0 0.19657 1 31076 31076 4.897 4.8532 1 + 14823 19227 9701 9704 14909 14909 0.009303131409069465 FIKAAKLE 8 Unmodified _FIKAAKLE_ 0 0 0 nc|ENSG00000145819|Q9UNA1|ARHGAP26;ENSG00000145819|ENST00000645722|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.2115478515625 3 307.191894 918.553853 NaN NaN NaN NaN NaN NaN NaN 111.59 1 111.59 111.09 112.09 0 0 0 0 0.21486 1 21953 21953 1.6526 0 1 14824 12368 9702 9705 14910 14910 0.09131849799541669 FIKKSVKKIL 10 Unmodified _FIKKSVKKIL_ 0 0 0 tr|U7SQT0|U7SQT0_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01677PE=4SV=1 tr|U7SQT0|U7SQT0_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01677PE=4SV=1 tr|U7SQT0|U7SQT0_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01677PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2799072265625 2 602.413009 1202.81146 NaN NaN NaN NaN NaN NaN NaN 165.85 1 161.07 160.57 161.57 -4.7898 0 0 0 0.22588 1 33255 33255 3.9444 3.5437 1 14825 26059 9703 9706 14911 14911 0.21817166672758503 FIKRKLVTLR 10 Unmodified _FIKRKLVTLR_ 0 0 0 ENST00000437267.2_1:143186250-143186403:-|nuORF ENST00000437267.2_1:143186250-143186403:-|nuORF ENST00000437267.2_1:143186250-143186403:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24481201171875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 74.673 1 70.997 70.497 71.497 -3.6764 0 0 0 2.8426 1 14116 14116 0.13989 0.13851 1 14826 9848 9704 9707 14912 14912 0.21390489652844735 FIKYEISF 8 Unmodified _FIKYEISF_ 0 0 0 ENSG00000166105|ENST00000431683|GLB1L3 ENSG00000166105|ENST00000431683|GLB1L3 ENSG00000166105|ENST00000431683|GLB1L3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6911010742188 2 523.781493 1045.54843 NaN NaN NaN NaN NaN NaN NaN 158.65 1 158.65 158.15 159.15 0 0 0 0 0.21486 1 31855 31855 8.5933 0.68312 1 14827 5688 9705 9708 14913 14913 0.027481262170795162 FILFLRRFWWR 11 Unmodified _FILFLRRFWWR_ 0 0 0 REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7864379882812 3 547.317262 1638.92996 0.68667 0.00037583 -0.40478 -0.00022154 0.28189 0.00015429 547.3169256928459 100.57 0.73424 100.57 100.13 100.87 0 51 20 3 0 0 0 0.96225 1 19695 19695 0 0 1 5250500 + 14828 20309 9706 9709 14914 14914 0.13604958701102987 FILFLRRFWWR 11 Unmodified _FILFLRRFWWR_ 0 0 0 REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78515625 3 547.317262 1638.92996 0.2495 0.00013655 1.1856 0.00064892 1.4351 0.00078548 547.3163325319382 142.62 0.13779 137.97 137.89 138.03 -4.656 5 3 2 0 0 0 0.96225 1 28191 28191 0.45452 0.45452 1 1276400 + 14829 20309 9706 9709 14915 14915 0.13604958701102987 FILFLRRFWWR 11 Unmodified _FILFLRRFWWR_ 0 0 0 REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7673950195312 3 547.317262 1638.92996 0.17944 9.8211E-05 0.11027 6.0352E-05 0.28971 0.00015856 547.6515647681032 104.54 0.86104 100.2 99.833 100.69 -4.346 58 24 3 0 0 0 0.82392 1 20032 20032 0.45452 0.45452 1 5330900 + 14830 20309 9706 9709 14916 14916 0.13604958701102987 FILFLRRFWWR 11 Unmodified _FILFLRRFWWR_ 0 0 0 REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7755126953125 3 547.317262 1638.92996 NaN NaN NaN NaN NaN NaN NaN 164.31 1 159.25 158.75 159.75 -5.0648 0 0 0 0.22632 1 32030 32030 0 0 1 + 14831 20309 9706 9709 14917 14917 0.13604958701102987 FILFRHFAMME 11 Unmodified _FILFRHFAMME_ 0 0 0 REV__ENST00000559471.5_1_15:49282358-49282517:-|nuORF REV__ENST00000559471.5_1_15:49282358-49282517:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2425537109375 3 481.242154 1440.70463 NaN NaN NaN NaN NaN NaN NaN 108.23 1 108.23 107.73 108.73 0 0 0 0 0.22632 1 21282 21282 0.026206 0 1 + 14832 23031 9707 9710 14918 14918 0.0019092512441147846 FILHEREMFR 10 Unmodified _FILHEREMFR_ 0 0 0 REV__ENST00000479510.2_1_6:33387852-33406697:+|nuORF REV__ENST00000479510.2_1_6:33387852-33406697:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2314453125 3 459.908052 1376.70233 NaN NaN NaN NaN NaN NaN NaN 15.962 1 14.608 14.108 15.108 -1.3534 0 0 0 2.8426 1 2236 2236 0.69767 0 1 + 14833 19319 9708 9711 14919 14919 0.029042127109278226 FILIIILQN 9 Unmodified _FILIIILQN_ 0 0 0 REV__ENSG00000178358|ENST00000317834|OR2D3 REV__ENSG00000178358|ENST00000317834|OR2D3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.783203125 2 543.84971 1085.68487 NaN NaN NaN NaN NaN NaN NaN 132.6 1 127.96 127.46 128.46 -4.6399 0 0 0 0.23508 1 26140 26140 4.756 0 1 + 14834 18603 9709 9712 14920 14920 0.14545240447637298 FILLVLITY 9 Unmodified _FILLVLITY_ 0 0 0 REV__tr|U7SNI1|U7SNI1_FUSNUGAFdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01767PE=4SV=1 REV__tr|U7SNI1|U7SNI1_FUSNUGAFdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01767PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.783447265625 2 547.846636 1093.67872 NaN NaN NaN NaN NaN NaN NaN 81.164 1 77.324 76.824 77.824 -3.8392 0 0 0 0.19632 1 15406 15406 0.40827 0 1 + 14835 24980 9710 9713 14921 14921 0.13562722216079237 FILWAHHY 8 Unmodified _FILWAHHY_ 0 0 0 REV__ENST00000429162.2_1_15:44581227-44599615:+|nuORF REV__ENST00000429162.2_1_15:44581227-44599615:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7833251953125 2 543.779619 1085.54469 NaN NaN NaN NaN NaN NaN NaN 100.14 1 95.843 95.343 96.343 -4.297 0 0 0 0.23294 1 19149 19149 1.7423 1.713 1 + 14836 21267 9711 9714 14922 14922 0.005335012338946399 FINAQRRIVQ 10 Unmodified _FINAQRRIVQ_ 0 0 0 MEIS3|p.R317Q|1|0.22|ENSG00000105419|chr19:47407123-47407123|C/T|missense_variant MEIS3|p.R317Q|1|0.22|ENSG00000105419|chr19:47407123-47407123|C/T|missense_variant MEIS3|p.R317Q|1|0.22|ENSG00000105419|chr19:47407123-47407123|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7581787109375 2 622.864746 1243.71494 NaN NaN NaN NaN NaN NaN NaN 65.199 1 61.741 61.241 62.241 -3.4581 0 0 0 2.8426 1 12197 12197 0.063865 0 1 14837 12128 9712 9715 14923 14923 0.10282992165502947 FINFKLLWRLF 11 Unmodified _FINFKLLWRLF_ 0 0 0 REV__nc|ENSG00000103534|Q6UXY8-4|TMC5 REV__nc|ENSG00000103534|Q6UXY8-4|TMC5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.1648864746094 4 374.974871 1495.87038 -1.5471 -0.00058012 0.48069 0.00018025 -1.0664 -0.00039987 374.9750748652248 20.47 0.24862 18.83 18.705 18.953 -1.6403 10 6 2 0 0 0 0.8267 1 3151 3151 0.08335 0.010087 1 247640 + 14838 14890 9713 9716 14924 14924 0.14227642967057363 FINFQLRRWRE 11 Unmodified _FINFQLRRWRE_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26611328125 3 522.288031 1563.84226 NaN NaN NaN NaN NaN NaN NaN 105.34 1 105.34 104.84 105.84 0 0 0 0 0.22632 1 20706 20706 0.172 0.14579 1 14839 1385 9714 9717 14925 14925 0.08289713039653179 FINFQLRRWRE 11 Unmodified _FINFQLRRWRE_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2689819335938 3 522.288031 1563.84226 NaN NaN NaN NaN NaN NaN NaN 154.18 1 148.92 148.42 149.42 -5.2669 0 0 0 0.22632 1 29895 29895 0.0059557 0.0053913 1 14840 1385 9714 9717 14926 14926 0.08289713039653179 FINFQLRRWRE 11 Unmodified _FINFQLRRWRE_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2747192382812 3 522.288031 1563.84226 NaN NaN NaN NaN NaN NaN NaN 128.11 1 123.37 122.87 123.87 -4.7408 0 0 0 0.22632 1 24650 24650 0.58532 0 1 14841 1385 9714 9717 14927 14927 0.08289713039653179 FINFQLRRWRE 11 Unmodified _FINFQLRRWRE_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2761840820312 3 522.288031 1563.84226 NaN NaN NaN NaN NaN NaN NaN 138.54 1 133.7 133.2 134.2 -4.84 0 0 0 0.22632 1 26700 26700 0.172 0.17144 1 14842 1385 9714 9717 14928 14928 0.08289713039653179 FINKFRIVKLT 11 Unmodified _FINKFRIVKLT_ 0 0 0 ENSG00000090020|ENST00000263980|SLC9A1;nc|ENSG00000090020|P19634-2|SLC9A1 ENSG00000090020|ENST00000263980|SLC9A1 ENSG00000090020|ENST00000263980|SLC9A1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2463073730469 3 460.29049 1377.84964 NaN NaN NaN NaN NaN NaN NaN 108.43 1 104.11 103.61 104.61 -4.32 0 0 0 0.23689 1 21364 21364 2.8433 1.5136 1 14843 1775 9715 9718 14929 14929 0.17583052587383463 FINLFVQSR 9 Unmodified _FINLFVQSR_ 0 0 0 REV__ENST00000299665.2_1_12:8666137-8666278:+|nuORF REV__ENST00000299665.2_1_12:8666137-8666278:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2139587402344 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 159.13 1 153.85 153.35 154.35 -5.2748 0 0 0 0.19648 1 30885 30885 1.2148 1.171 1 + 14844 20392 9716 9719 14930 14930 0.06217424605551969 FINRYSTY 8 Unmodified _FINRYSTY_ 0 0 0 REV__nc|ENSG00000160285|P48449-2|LSS REV__nc|ENSG00000160285|P48449-2|LSS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2680053710938 2 532.263999 1062.51345 0.926 0.00049288 -0.58827 -0.00031312 0.33773 0.00017976 532.2635863053604 121.81 1.2547 117.13 116.56 117.82 -4.6873 79 35 3 0 0 0 0.69085 1 23519 23519 15.768 1.8622 1 9620000 + 14845 17412 9717 9720 14931 14931 -0.015311165908542534 FINWGQQFYYY 11 Unmodified _FINWGQQFYYY_ 0 0 0 REV__SCN5A|p.Y1009Tfs*136|3|0.35|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant REV__SCN5A|p.Y1009Tfs*136|3|0.35|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 510.2625427246094 3 510.23471 1527.6823 NaN NaN NaN NaN NaN NaN NaN 95.215 1 91.166 90.666 91.666 -4.0496 0 0 0 0.22632 1 18663 18663 0.172 0.14579 1 + 14846 18872 9718 9721 14932 14932 -0.06043259747980301 FIPDLTNPQ 9 Unmodified _FIPDLTNPQ_ 0 0 0 REV__ENSG00000249715|ENST00000624922|FER1L5 REV__ENSG00000249715|ENST00000624922|FER1L5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.68896484375 2 522.771657 1043.52876 0.44104 0.00023056 0.021936 1.1467E-05 0.46298 0.00024203 522.7715047687656 154.25 0.73698 149.03 148.69 149.43 -5.2209 49 20 3 0 0 0 0.44932 1 29851 29851 22.736 2.2827 1 4456800 + 14847 19822 9719 9722 14933 14933 0.008737502063240754 FIPDNASGQV 10 Unmodified _FIPDNASGQV_ 0 0 0 REV__ENSG00000077498|ENST00000263321|TYR REV__ENSG00000077498|ENST00000263321|TYR MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 350.16778564453125 3 349.841701 1046.50327 -0.28427 -9.945E-05 1.2392 0.00043352 0.95492 0.00033407 349.8421008324949 23.366 0.90141 23.366 22.857 23.758 0 58 25 3 0 0 0 0.47611 1 3902 3902 6.6304 6.365 1 1100900 + 14848 14366 9720 9723 14934 14934 -0.018117243160759244 FIPKIGMVV 9 Unmodified _FIPKIGMVV_ 0 0 0 REV__tr|U7SJ54|U7SJ54_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02095PE=3SV=1 REV__tr|U7SJ54|U7SJ54_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02095PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 502.44989013671875 2 502.304081 1002.59361 NaN NaN NaN NaN NaN NaN NaN 11.971 1 11.971 11.471 12.471 0 0 0 0 0.19636 1 1633 1633 2.4985 2.4951 1 + 14849 24905 9721 9724 14935 14935 0.09241653478636636 FIPLRYIILI 10 Unmodified _FIPLRYIILI_ 0 0 0 nc|ENSG00000140563|Q6DN12-3|MCTP2;ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2 nc|ENSG00000140563|Q6DN12-3|MCTP2 nc|ENSG00000140563|Q6DN12-3|MCTP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7640991210938 2 630.907559 1259.80057 NaN NaN NaN NaN NaN NaN NaN 86.986 1 86.986 86.486 87.486 0 0 0 0 2.8426 1 16977 16977 0.013265 0 1 14850 4313 9722 9725 14936 14936 0.1810576429845696 FIPWYFLT 8 Unmodified _FIPWYFLT_ 0 0 0 nc|ENSG00000068366|O60488|ACSL4 nc|ENSG00000068366|O60488|ACSL4 nc|ENSG00000068366|O60488|ACSL4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7741088867188 2 543.786579 1085.5586 NaN NaN NaN NaN NaN NaN NaN 154.02 1 149.25 148.75 149.75 -4.7684 0 0 0 0.2074 1 30609 30609 19.439 1.304 1 14851 12232 9723 9726 14937 14937 0.019247339423372978 FIQAYIKQEQD 11 Unmodified _FIQAYIKQEQD_ 0 0 0 REV__ENST00000479768.6_1_7:142643674-142659293:-|nuORF REV__ENST00000479768.6_1_7:142643674-142659293:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5340881347656 3 461.56987 1381.68778 NaN NaN NaN NaN NaN NaN NaN 21.32 1 19.936 19.436 20.436 -1.3847 0 0 0 0.23452 1 3349 3349 4.7159 0 1 + 14852 19381 9724 9727 14938 14938 0.012204190437842044 FIQKQNAI 8 Unmodified _FIQKQNAI_ 0 0 0 REV__ENSG00000173093|ENST00000308208|CCDC63 REV__ENSG00000173093|ENST00000308208|CCDC63 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77850341796875 2 481.276909 960.539266 0.010234 4.9255E-06 0.14557 7.0061E-05 0.15581 7.4987E-05 481.2769394140775 111.25 0.65858 111.25 110.86 111.52 0 41 18 3 0 0 0 8448 1 21845 21845 6.1918 0 1 4267600 + 14853 18326 9725 9728 14939 14939 0.05741777651417124 FIQKYLSL 8 Unmodified _FIQKYLSL_ 0 0 0 ENST00000433866.6_1_16:83845533-83845581:+|nuORF ENST00000433866.6_1_16:83845533-83845581:+|nuORF ENST00000433866.6_1_16:83845533-83845581:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.7669982910156 2 506.29731 1010.58007 0.10502 5.3172E-05 -0.37758 -0.00019117 -0.27256 -0.000138 506.29699434643067 159.26 0.96603 154.47 153.97 154.94 -4.7952 42 26 2 0 0 0 0.88085 1 31631 31631 6.1918 0 1 3163600 14854 9815 9726 9729 14940 14940 0.07520118971035572 FIQSRSLLD 9 Unmodified _FIQSRSLLD_ 0 0 0 REV__ENST00000554340.1_1_12:57457103-57463048:-|nuORF REV__ENST00000554340.1_1_12:57457103-57463048:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 146.01 1 141.01 140.51 141.51 -5 0 0 0 0.23508 1 28250 28250 2.4985 0 1 + 14855 17882 9727 9730 14941 14941 0.0461712798901317 FIQSTKRW 8 Unmodified _FIQSTKRW_ 0 0 0 REV__ENST00000603731.1_2_7:35734046-35735162:-|nuORF REV__ENST00000603731.1_2_7:35734046-35735162:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2832641601562 2 533.295633 1064.57671 0.1125 5.9993E-05 0.24231 0.00012922 0.3548 0.00018921 533.2958883014185 95.112 1.049 91.063 90.744 91.793 -4.0496 37 29 2 0 0 0 0.69887 1 18733 18733 14.582 0 1 1178900 + 14856 23436 9728 9731 14942 14942 0.04700868917052503 FIRGVRLLN 9 Unmodified _FIRGVRLLN_ 0 0 0 REV__DYNC1H1|p.A4141V|1|0.06|ENSG00000197102|chr14:102042657-102042657|C/T|missense_variant REV__DYNC1H1|p.A4141V|1|0.06|ENSG00000197102|chr14:102042657-102042657|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7758178710938 2 544.340375 1086.6662 0.33841 0.00018421 2.0318 0.001106 2.3702 0.0012902 544.3427357284776 148.85 0.20546 148.85 148.72 148.93 0 8 5 3 0 0 0 0.61568 1 29778 29778 0.073264 0 1 1744700 + 14857 13763 9729 9732 14943 14943 0.12633123596424412 FIRKRKLY 8 Unmodified _FIRKRKLY_ 0 0 0 REV__nc|ENSG00000161847|Q8IY67-2|RAVER1 REV__nc|ENSG00000161847|Q8IY67-2|RAVER1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 562.3571166992188 2 562.358568 1122.70258 NaN NaN NaN NaN NaN NaN NaN 56.1 1 52.91 52.41 53.41 -3.1895 0 0 0 0.21486 1 10388 10388 2.5775 0.51773 1 + 14858 17470 9730 9733 14944 14944 0.14614000493133972 FIRRGSQDF 9 Unmodified _FIRRGSQDF_ 0 0 0 REV__BRWD3|p.R190Q|1|0.2|ENSG00000165288|chrX:80745591-80745591|C/T|missense_variant REV__BRWD3|p.R190Q|1|0.2|ENSG00000165288|chrX:80745591-80745591|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 563.32177734375 2 563.293622 1124.57269 -0.028784 -1.6214E-05 0.4006 0.00022565 0.37181 0.00020944 563.2937812092053 62.745 0.53494 62.745 62.447 62.982 0 29 14 3 0 0 0 0.61228 1 12089 12089 7.9102 0 1 8275700 + 14859 13213 9731 9734 14945 14945 0.01538779423322012 FIRRKWHEERL 11 Unmodified _FIRRKWHEERL_ 0 0 0 ENST00000473481.1_1_10:27066118-27112155:-|nuORF ENST00000473481.1_1_10:27066118-27112155:-|nuORF ENST00000473481.1_1_10:27066118-27112155:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3955688476562 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 114.78 1 114.78 114.28 115.28 0 0 0 0 0.22632 1 22582 22582 0.50596 0 1 14860 10240 9732 9735 14946 14946 0.10713401931047883 FIRRKWHEERL 11 Unmodified _FIRRKWHEERL_ 0 0 0 ENST00000473481.1_1_10:27066118-27112155:-|nuORF ENST00000473481.1_1_10:27066118-27112155:-|nuORF ENST00000473481.1_1_10:27066118-27112155:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3971557617188 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 121.17 1 121.17 120.67 121.67 0 0 0 0 0.22632 1 23884 23884 0.094841 0 1 14861 10240 9732 9735 14947 14947 0.10713401931047883 FIRRKWHEERL 11 Unmodified _FIRRKWHEERL_ 0 0 0 ENST00000473481.1_1_10:27066118-27112155:-|nuORF ENST00000473481.1_1_10:27066118-27112155:-|nuORF ENST00000473481.1_1_10:27066118-27112155:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.396728515625 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 127.48 1 122.68 122.18 123.18 -4.7958 0 0 0 0.22632 1 24469 24469 0.50596 0.41111 1 14862 10240 9732 9735 14948 14948 0.10713401931047883 FIRRKWHEERL 11 Unmodified _FIRRKWHEERL_ 0 0 0 ENST00000473481.1_1_10:27066118-27112155:-|nuORF ENST00000473481.1_1_10:27066118-27112155:-|nuORF ENST00000473481.1_1_10:27066118-27112155:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3933715820312 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 129.51 1 124.7 124.2 125.2 -4.817 0 0 0 0.22632 1 24865 24865 0.094841 0.094277 1 14863 10240 9732 9735 14949 14949 0.10713401931047883 FISATSALVA 10 Unmodified _FISATSALVA_ 0 0 0 REV__nc|ENSG00000143552|Q5VU65-2|NUP210L REV__nc|ENSG00000143552|Q5VU65-2|NUP210L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2547607421875 2 490.276575 978.538597 0.10274 5.0369E-05 0.11624 5.6992E-05 0.21898 0.00010736 490.27657444947323 69.94 0.73526 66.473 66.078 66.814 -3.467 57 20 4 0 0 0 0.71097 1 13160 13160 10.074 2.1638 1 15800000 + 14864 16736 9733 9736 14950 14950 0.04846938211687757 FISKVNTA 8 Unmodified _FISKVNTA_ 0 0 0 nc|ENSG00000088766|Q9UJA2-2|CRLS1;ENSG00000088766|ENST00000378863|CRLS1 nc|ENSG00000088766|Q9UJA2-2|CRLS1 nc|ENSG00000088766|Q9UJA2-2|CRLS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 440.2105407714844 2 440.25036 878.486168 -0.45771 -0.00020151 0.49559 0.00021818 0.037881 1.6677E-05 440.2505113314885 38.294 0.93725 35.825 35.609 36.546 -2.4688 39 26 2 0 0 0 0.88085 1 7083 7083 1.7423 0 1 2355700 14865 1733 9734 9737 14951 14951 0.042063998687467574 FISLEPHFY 9 Unmodified _FISLEPHFY_ 0 0 0 nc|ENSG00000048052|Q9UKV0-4|HDAC9 nc|ENSG00000048052|Q9UKV0-4|HDAC9 nc|ENSG00000048052|Q9UKV0-4|HDAC9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3143920898438 2 576.78985 1151.56515 NaN NaN NaN NaN NaN NaN NaN 93.639 1 89.795 89.295 90.295 -3.844 0 0 0 0.23508 1 17953 17953 9.3474 1.4373 1 14866 12214 9735 9738 14952 14952 -0.004573728969489821 FISMAFKL 8 Unmodified _FISMAFKL_ 0 0 0 VANGL1|p.Y204Tfs*67|1|0.24|ENSG00000173218|chr1:115664061-115664061|T/-|frameshift_variant;VANGL1|p.F172Sfs*99|2|0.35|ENSG00000173218|chr1:115663965-115663965|T/-|frameshift_variant;VANGL1|p.Y204Lfs*88|1|0.32|ENSG00000173218|chr1:115664060-115664061|-/T|frameshift_variant;VANGL1|p.L451Cfs*21|1|0.34|ENSG00000173218|chr1:115691153-115691153|C/-|frameshift_variant;nc|ENSG00000173218|Q8TAA9-2|VANGL1;ENSG00000173218|ENST00000355485|VANGL1 VANGL1|p.Y204Tfs*67|1|0.24|ENSG00000173218|chr1:115664061-115664061|T/-|frameshift_variant VANGL1|p.Y204Tfs*67|1|0.24|ENSG00000173218|chr1:115664061-115664061|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7298278808594 2 478.767332 955.52011 NaN NaN NaN NaN NaN NaN NaN 158.14 1 152.87 152.37 153.37 -5.2712 0 0 0 0.2074 1 30682 30682 19.439 5.9311 1 14867 6278 9736 9739 14953 14953 0.040571050361450034 FISPTIPITY 10 Unmodified _FISPTIPITY_ 0 0 0 ENST00000402742.1_1_6:85996357-85996766:+|nuORF ENST00000402742.1_1_6:85996357-85996766:+|nuORF ENST00000402742.1_1_6:85996357-85996766:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3214721679688 2 576.320983 1150.62741 NaN NaN NaN NaN NaN NaN NaN 153.57 1 148.8 148.3 149.3 -4.7684 0 0 0 0.22588 1 30519 30519 10.824 0.67336 1 14868 9518 9737 9740 14954 14954 0.058123534513924824 FISSKEATP 9 Unmodified _FISSKEATP_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2581787109375 2 490.258382 978.502212 -0.1386 -6.795E-05 0.0090251 4.4246E-06 -0.12957 -6.3525E-05 490.2585092811137 66.449 0.49157 66.449 66.239 66.731 0 18 13 2 0 0 0 0.36931 1 12818 12818 27.629 3.6082 1 1414800 + 14869 19000 9738 9741 14955 14955 0.012100613149868877 FISSKEATP 9 Unmodified _FISSKEATP_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.258382 978.502212 0.47722 0.00023396 0.16827 8.2494E-05 0.64548 0.00031645 490.2583573887621 70.132 0.56149 66.552 66.276 66.838 -3.5798 0.036667 -0.00011331 NaN 27.629 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1342400 + 14870 19000 9738 9741 0.012100613149868877 FISTYTVLS 9 Unmodified _FISTYTVLS_ 0 0 0 REV__ENST00000462721.5_1_19:35988209-35989636:-|nuORF REV__ENST00000462721.5_1_19:35988209-35989636:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.8507080078125 3 344.186697 1029.53826 -2.2939 -0.00078953 -1.0213 -0.00035152 -3.3152 -0.0011411 344.1862564124802 14.61 0.23194 13.399 13.282 13.513 -1.2106 8 6 2 0 0 0 0.65202 1 1963 1963 0.96228 0.954 1 339500 + 14871 21909 9739 9742 14956 14956 0.024675184918578452 FISTYTVLS 9 Unmodified _FISTYTVLS_ 0 0 0 REV__ENST00000462721.5_1_19:35988209-35989636:-|nuORF REV__ENST00000462721.5_1_19:35988209-35989636:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 344.186697 1029.53826 -0.93161 -0.00032065 -2.1928 -0.00075474 -3.1244 -0.0010754 344.1859427849368 14.566 0.27524 13.452 13.297 13.572 -1.1142 0.026272 -0.00051744 NaN 0.96228 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1157000 + 14872 21909 9739 9742 0.024675184918578452 FITSEFHYQRR 11 Unmodified _FITSEFHYQRR_ 0 0 0 REV__PEX3|p.N61Tfs*10|1|0.04|ENSG00000034693|chr6:143459192-143459193|-/CTATATTC|frameshift_variant REV__PEX3|p.N61Tfs*10|1|0.04|ENSG00000034693|chr6:143459192-143459193|-/CTATATTC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3785400390625 2 742.375675 1482.7368 NaN NaN NaN NaN NaN NaN NaN 138.89 1 134.25 133.75 134.75 -4.6439 0 0 0 0.22632 1 27428 27428 0.50596 0.50539 1 + 14873 24455 9740 9743 14957 14957 0.014737521234110318 FIVPSPTEA 9 Unmodified _FIVPSPTEA_ 0 0 0 REV__ENSG00000138642|ENST00000264346|HERC6 REV__ENSG00000138642|ENST00000264346|HERC6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24200439453125 2 480.755475 959.496398 0.015367 7.3879E-06 0.2603 0.00012514 0.27567 0.00013253 480.755824505521 97.863 1.4706 93.943 93.433 94.903 -3.9194 67 42 2 0 0 0 0.57447 1 18812 18812 14.838 14.838 1 2528900 + 14874 16470 9741 9744 14958 14958 0.015029628033175868 FIVSLAYAFET 11 Unmodified _FIVSLAYAFET_ 0 0 0 ENSG00000185974|ENST00000335678|GRK1 ENSG00000185974|ENST00000335678|GRK1 ENSG00000185974|ENST00000335678|GRK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7617797851562 2 630.829172 1259.64379 NaN NaN NaN NaN NaN NaN NaN 129.42 1 124.61 124.11 125.11 -4.817 0 0 0 0.22943 1 24847 24847 8.7454 0 1 14875 7024 9742 9745 14959 14959 0.024354346174504826 FIWEDRIS 8 Unmodified _FIWEDRIS_ 0 0 0 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2685546875 2 533.271824 1064.5291 0.72819 0.00038832 -0.60863 -0.00032456 0.11956 6.3757E-05 533.2714571641727 108.5 2.1367 104.37 103.7 105.83 -4.135 196 60 5 0 0 0 8448 1 21113 21113 1.7423 1.334 1 153590000 + 14876 14735 9743 9746 14960 14960 -0.0005883007381726202 FIYDKGDKG 9 Unmodified _FIYDKGDKG_ 0 0 0 REV__ENSG00000157152|ENST00000621198|SYN2 REV__ENSG00000157152|ENST00000621198|SYN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.272705078125 2 521.763832 1041.51311 -0.35212 -0.00018372 0.91525 0.00047755 0.56314 0.00029382 521.7642402678265 113.62 0.48281 109.17 109.01 109.49 -4.4538 20 13 2 0 0 0 0.44932 1 22362 22362 22.736 3.4793 1 1968900 + 14877 17285 9744 9747 14961 14961 -0.00598536310712916 FIYDKGDKG 9 Unmodified _FIYDKGDKG_ 0 0 0 REV__ENSG00000157152|ENST00000621198|SYN2 REV__ENSG00000157152|ENST00000621198|SYN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.265869140625 2 521.763832 1041.51311 -0.63479 -0.00033121 1.2638 0.00065938 0.62897 0.00032817 521.7643853738174 113.69 0.48805 109.17 108.96 109.44 -4.5259 24 13 2 0 0 0 0.17935 1 21847 21847 39.95 5.8473 1 1694400 + 14878 17285 9744 9747 14962 14962 -0.00598536310712916 FIYKHCLY 8 Unmodified _FIYKHCLY_ 0 0 0 REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.796630859375 2 543.775688 1085.53682 NaN NaN NaN NaN NaN NaN NaN 135.34 1 135.34 134.84 135.84 0 0 0 0 0.20568 1 26807 26807 20.871 5.024 1 + 14879 16269 9745 9748 14963 14963 -0.0025239407789285906 FIYKHCLY 8 Unmodified _FIYKHCLY_ 0 0 0 REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7772216796875 2 543.775688 1085.53682 NaN NaN NaN NaN NaN NaN NaN 135.47 1 135.47 134.97 135.97 0 0 0 0 0.20568 1 26834 26834 20.871 1.4322 1 + 14880 16269 9745 9748 14964 14964 -0.0025239407789285906 FIYLYQRWIYR 11 Unmodified _FIYLYQRWIYR_ 0 0 0 nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1;ENST00000586915.1_1_19:45495538-45496152:+|nuORF nc|ENSG00000104853|O96005-3|CLPTM1 nc|ENSG00000104853|O96005-3|CLPTM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2734985351562 3 540.961033 1619.86127 0.2808 0.0001519 -3.4392 -0.0018605 -3.1584 -0.0017086 540.9607428641361 113.35 0.16911 113.35 113.24 113.41 0 6 4 2 0 0 0 0.80759 1 22275 22275 2.6312 2.1253 1 1190000 14881 2261 9746 9749 14965 14965 0.07613249610744788 FIYLYQRWIYR 11 Unmodified _FIYLYQRWIYR_ 0 0 0 nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1;ENST00000586915.1_1_19:45495538-45496152:+|nuORF nc|ENSG00000104853|O96005-3|CLPTM1 nc|ENSG00000104853|O96005-3|CLPTM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.36962890625 2 810.937911 1619.86127 0.73382 0.00059508 0.74603 0.00060498 1.4798 0.0012001 810.9380732648754 174.97 0.1712 170.18 170.06 170.23 -4.7898 5 4 2 0 0 0 0.96212 1 35757 35757 0.26902 0 1 12399000 14882 2261 9746 9749 14966 14966 0.07613249610744788 FIYREDSL 8 Unmodified _FIYREDSL_ 0 0 0 HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|1|1|sense HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|1|1|sense HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|1|1|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2661743164062 2 521.763832 1041.51311 -0.35212 -0.00018372 0.91525 0.00047755 0.56314 0.00029382 521.7642402678265 113.62 0.48281 109.17 109.01 109.49 -4.4538 20 13 2 0 0 0 0.52597 1 22375 22375 26.884 0.61551 1 1968900 14883 11885 9747 9750 14967 14967 -0.00598536310712916 FIYTNRVMFEK 11 Unmodified _FIYTNRVMFEK_ 0 0 0 REV__ENSG00000146085|ENST00000274813|MMUT REV__ENSG00000146085|ENST00000274813|MMUT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 483.8794250488281 3 483.251595 1446.73296 -0.6084 -0.00029401 0.58576 0.00028307 -0.022647 -1.0944E-05 483.2518347256394 12.742 0.31615 11.613 11.456 11.772 -1.1293 16 8 4 0 0 0 0.60781 1 1587 1587 5.4027 5.1954 1 2803400 + 14884 16869 9748 9751 14968 14968 0.027459463053219224 FIYTNRVMFEK 11 Unmodified _FIYTNRVMFEK_ 0 0 0 REV__ENSG00000146085|ENST00000274813|MMUT REV__ENSG00000146085|ENST00000274813|MMUT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 483.251595 1446.73296 -0.58946 -0.00028486 0.37622 0.00018181 -0.21324 -0.00010305 483.25176747450223 12.723 0.20879 11.713 11.59 11.799 -1.0098 0.050235 -0.00014072 NaN 5.4027 14 5 4 NaN NaN NaN NaN 0 NaN NaN 0 5181300 + 14885 16869 9748 9751 0.027459463053219224 FIYTNRVMFEK 11 Unmodified _FIYTNRVMFEK_ 0 0 0 REV__ENSG00000146085|ENST00000274813|MMUT REV__ENSG00000146085|ENST00000274813|MMUT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 483.251595 1446.73296 -0.6084 -0.00029401 0.58576 0.00028307 -0.022647 -1.0944E-05 483.2518347256394 12.742 0.31615 11.613 11.456 11.772 -1.1293 -0.050235 0.00016306 NaN 5.4027 16 8 4 NaN NaN NaN NaN 0 NaN NaN 0 2803400 + 14886 16869 9748 9751 0.027459463053219224 FIYYLIRY 8 Unmodified _FIYYLIRY_ 0 0 0 REV__nc|ENSG00000167615|Q96PV6-1|LENG8 REV__nc|ENSG00000167615|Q96PV6-1|LENG8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3252563476562 2 575.81841 1149.62227 0.13265 7.6382E-05 -0.66652 -0.00038379 -0.53387 -0.00030741 576.3200310779309 153.33 0.17706 148.56 148.44 148.62 -4.7684 6 4 2 0 0 0 0.69085 1 30467 30467 15.768 0.92995 1 3893800 + 14887 17945 9749 9752 14969 14969 0.05344094379415765 FKAKYFYI 8 Unmodified _FKAKYFYI_ 0 0 0 nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1 nc|ENSG00000157212|Q6ZW49-2|PAXIP1 nc|ENSG00000157212|Q6ZW49-2|PAXIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2010498046875 3 360.535661 1078.58515 -0.57118 -0.00020593 0.039157 1.4118E-05 -0.53202 -0.00019181 360.5355826423473 91.779 0.62419 87.971 87.652 88.276 -3.8083 35 17 3 0 0 0 0.83271 1 17526 17526 1.8442 0.77278 1 4222500 14888 5122 9750 9753 14970 14970 0.04900422833657103 FKALFIRPPR 10 Unmodified _FKALFIRPPR_ 0 0 0 nc|ENSG00000248905|Q68DA7-5|FMN1;nc|ENSG00000248905|Q68DA7-3|FMN1 nc|ENSG00000248905|Q68DA7-5|FMN1 nc|ENSG00000248905|Q68DA7-5|FMN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.76806640625 2 622.88495 1243.75535 NaN NaN NaN NaN NaN NaN NaN 160.51 1 155.28 154.78 155.78 -5.2299 0 0 0 2.8426 1 31166 31166 1.9064 1.7344 1 14889 12622 9751 9754 14971 14971 0.14321958555933634 FKALPICK 8 Unmodified _FKALPICK_ 0 0 0 TLR6|p.E667Kfs*65|1|0.4|ENSG00000174130|chr4:38827476-38827476|T/-|frameshift_variant;ENSG00000174130|ENST00000508254|TLR6;TLR6|p.N423Tfs*8|1|0.09|ENSG00000174130|chr4:38828206-38828206|T/-|frameshift_variant;nc|ENSG00000174130|Q9Y2C9-2|TLR6 TLR6|p.E667Kfs*65|1|0.4|ENSG00000174130|chr4:38827476-38827476|T/-|frameshift_variant TLR6|p.E667Kfs*65|1|0.4|ENSG00000174130|chr4:38827476-38827476|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2403564453125 2 460.275324 918.536095 NaN NaN NaN NaN NaN NaN NaN 90.037 1 85.993 85.493 86.493 -4.0443 0 0 0 0.23782 1 17151 17151 0.12286 0 1 14890 6331 9752 9755 14972 14972 0.07356811273064068 FKARVCLSF 9 Unmodified _FKARVCLSF_ 0 0 0 ENST00000405709.6_1_7:111201948-111202062:-|nuORF ENST00000405709.6_1_7:111201948-111202062:-|nuORF ENST00000405709.6_1_7:111201948-111202062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5552062988281 3 357.532034 1069.57427 NaN NaN NaN NaN NaN NaN NaN 45.183 1 42.318 41.818 42.818 -2.8653 0 0 0 0.23508 1 8198 8198 7.609 0.50723 1 14891 9535 9753 9756 14973 14973 0.0422669718770976 FKATEKELK 9 Unmodified _FKATEKELK_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7744140625 2 547.316232 1092.61791 0.33518 0.00018345 2.3814 0.0013034 2.7166 0.0014868 547.3157596404776 152.23 0.25523 152.23 152.01 152.27 0 9 6 2 0 0 0 0.43219 1 30497 30497 23.79 9.8837 1 2303800 14892 4118 9754 9757 14974 14974 0.0753058516584133 FKDPVYRARRK 11 Unmodified _FKDPVYRARRK_ 0 0 0 ENST00000549111.5_1_12:103248818-103310977:-|nuORF;ENSG00000171759|ENST00000553106|PAH ENST00000549111.5_1_12:103248818-103310977:-|nuORF ENST00000549111.5_1_12:103248818-103310977:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7232360839844 3 479.280877 1434.8208 0.23653 0.00011337 -1.2786 -0.00061279 -1.042 -0.00049942 479.2802990305439 77.131 0.48386 77.131 76.839 77.323 0 33 13 3 0 0 0 0.96219 1 14962 14962 1.1098 1.1098 1 2948800 14893 6165 9755 9758 14975 14975 0.12078328010966288 FKEQWENKSVF 11 Unmodified _FKEQWENKSVF_ 0 0 0 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2425842285156 3 481.241865 1440.70376 -0.2075 -9.9858E-05 -0.066028 -3.1776E-05 -0.27353 -0.00013163 481.2418697265487 70.244 0.91811 70.244 69.814 70.732 0 37 25 2 0 0 0 0.63394 1 13672 13672 0.0059557 0 1 3028700 14894 742 9756 9759 14976 14976 0.0010412528067718085 FKGGPPRR 8 Unmodified _FKGGPPRR_ 0 0 0 nc|ENSG00000137776|Q9NWH9-3|SLTM;ENSG00000137776|ENST00000380516|SLTM nc|ENSG00000137776|Q9NWH9-3|SLTM nc|ENSG00000137776|Q9NWH9-3|SLTM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2240905761719 2 457.769586 913.524619 -0.43362 -0.0001985 0.44485 0.00020364 0.011231 5.141E-06 457.769756455304 16.803 0.59176 15.587 15.32 15.912 -1.2159 45 16 4 0 0 0 0.81042 1 2666 2666 30.225 30.225 1 19979000 14895 4109 9757 9760 14977 14977 0.06439750293941415 FKGRSWLWLYI 11 Unmodified _FKGRSWLWLYI_ 0 0 0 PKD1L3|p.G6R|1|0.4|ENSG00000277481|chr16:71999963-71999963|C/T|missense_variant PKD1L3|p.G6R|1|0.4|ENSG00000277481|chr16:71999963-71999963|C/T|missense_variant PKD1L3|p.G6R|1|0.4|ENSG00000277481|chr16:71999963-71999963|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27691650390625 3 490.27484 1467.80269 NaN NaN NaN NaN NaN NaN NaN 132.29 1 127.43 126.93 127.93 -4.8527 0 0 0 0.22632 1 25411 25411 1.4551 1.4546 1 14896 12796 9758 9761 14978 14978 0.08750193036280507 FKHWIIRGF 9 Unmodified _FKHWIIRGF_ 0 0 0 REV__nc|ENSG00000136522|Q9HD33-3|MRPL47 REV__nc|ENSG00000136522|Q9HD33-3|MRPL47 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2736206054688 2 602.342918 1202.67128 NaN NaN NaN NaN NaN NaN NaN 79.173 1 75.663 75.163 76.163 -3.5102 0 0 0 0.23508 1 15462 15462 4.756 0.42677 1 + 14897 16336 9759 9762 14979 14979 0.07805427459015846 FKIHRDEH 8 Unmodified _FKIHRDEH_ 0 0 0 REV__ENSG00000115808|ENST00000263918|STRN REV__ENSG00000115808|ENST00000263918|STRN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2791137695312 2 541.280515 1080.54648 NaN NaN NaN NaN NaN NaN NaN 46.762 1 46.762 46.262 47.262 0 0 0 0 0.23312 1 8813 8813 6.2058 6.1925 1 + 14898 15450 9760 9763 14980 14980 0.009425102518434869 FKIPQRLREKW 11 Unmodified _FKIPQRLREKW_ 0 0 0 sp|Q6SWC0|UL10_HCMVMUncharacterizedproteinUL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL10PE=3SV=1;sp|P16843|UL10_HCMVAUncharacterizedproteinUL10OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL10PE=3SV=2 sp|Q6SWC0|UL10_HCMVMUncharacterizedproteinUL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL10PE=3SV=1 sp|Q6SWC0|UL10_HCMVMUncharacterizedproteinUL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL10PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 500.74932861328125 3 500.964777 1499.8725 NaN NaN NaN NaN NaN NaN NaN 162.69 1 157.55 157.05 158.05 -5.1438 0 0 0 0.23698 1 31622 31622 0.50596 0 1 14899 25762 9761 9764 14981 14981 0.1425607170483545 FKKATVTLED 10 Unmodified _FKKATVTLED_ 0 0 0 nc|ENSG00000100311|P01127-2|PDGFB;ENSG00000100311|ENST00000331163|PDGFB nc|ENSG00000100311|P01127-2|PDGFB nc|ENSG00000100311|P01127-2|PDGFB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.318359375 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 88.362 1 84.57 84.07 85.07 -3.7926 0 0 0 2.8426 1 17286 17286 0.26539 0.25212 1 14900 1950 9762 9765 14982 14982 0.05410263957674033 FKKILKSLRK 10 Unmodified _FKKILKSLRK_ 0 0 0 REV__nc|ENSG00000160208|Q14684-2|RRP1B REV__nc|ENSG00000160208|Q14684-2|RRP1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7590942382812 2 630.929357 1259.84416 NaN NaN NaN NaN NaN NaN NaN 134.27 1 134.27 133.77 134.77 0 0 0 0 2.8426 1 26576 26576 0.043787 0 1 + 14901 17404 9763 9766 14983 14983 0.2246337379558554 FKKIRRKREFR 11 Unmodified _FKKIRRKREFR_ 0 0 0 ENSG00000130560|ENST00000371756|UBAC1;ENST00000465873.5_1_9:138834060-138837107:-|nuORF;ENST00000471163.1_1_9:138834060-138839712:-|nuORF ENSG00000130560|ENST00000371756|UBAC1 ENSG00000130560|ENST00000371756|UBAC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2803344726562 3 521.995071 1562.96338 0.2594 0.00013541 -3.7993 -0.0019832 -3.5399 -0.0018478 521.9917880349764 134.18 0.21509 129.36 129.2 129.41 -4.8175 6 5 2 0 0 0 0.96227 1 25828 25828 0.08335 0.08335 1 1015700 14902 3618 9764 9767 14984 14984 0.20441960473021936 FKKKLVKQLA 10 Unmodified _FKKKLVKQLA_ 0 0 0 REV__ENST00000417314.2_1_3:67049593-67053671:+|nuORF REV__ENST00000417314.2_1_3:67049593-67053671:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2817993164062 2 601.902808 1201.79106 NaN NaN NaN NaN NaN NaN NaN 123.69 1 119.1 118.6 119.6 -4.5926 0 0 0 2.8426 1 23808 23808 0.13989 0 1 + 14903 21475 9765 9768 14985 14985 0.19823996012951284 FKKRDRRTKAY 11 Unmodified _FKKRDRRTKAY_ 0 0 0 REV__tr|U7SV14|U7SV14_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01471PE=4SV=1 REV__tr|U7SV14|U7SV14_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01471PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25823974609375 3 490.288031 1467.84226 NaN NaN NaN NaN NaN NaN NaN 86.677 1 86.677 86.177 87.177 0 0 0 0 0.22632 1 16916 16916 2.732 2.7006 1 + 14904 25177 9766 9769 14986 14986 0.12705713039713373 FKKRRRRARKY 11 Unmodified _FKKRRRRARKY_ 0 0 0 nc|ENSG00000172403|Q9UMS6-5|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2752075195312 3 522.330565 1563.96987 0.20264 0.00010584 -3.5009 -0.0018286 -3.2983 -0.0017228 522.3283593975195 140.7 0.21228 140.7 140.58 140.79 0 7 5 2 0 0 0 0.89134 1 28009 28009 0.094841 0.094841 1 7569800 14905 6219 9767 9770 14987 14987 0.21043898424409235 FKKRRRRARKY 11 Unmodified _FKKRRRRARKY_ 0 0 0 nc|ENSG00000172403|Q9UMS6-5|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.276611328125 3 522.330565 1563.96987 NaN NaN NaN NaN NaN NaN NaN 55.687 1 52.498 51.998 52.998 -3.1895 0 0 0 0.22632 1 10300 10300 0.026206 0.026206 1 14906 6219 9767 9770 14988 14988 0.21043898424409235 FKKRRRRARKY 11 Unmodified _FKKRRRRARKY_ 0 0 0 nc|ENSG00000172403|Q9UMS6-5|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26220703125 3 522.330565 1563.96987 NaN NaN NaN NaN NaN NaN NaN 59.54 1 56.226 55.726 56.726 -3.3139 0 0 0 0.22632 1 11073 11073 0.0072825 0.0072825 1 14907 6219 9767 9770 14989 14989 0.21043898424409235 FKKRRRRARKY 11 Unmodified _FKKRRRRARKY_ 0 0 0 nc|ENSG00000172403|Q9UMS6-5|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27197265625 3 522.330565 1563.96987 NaN NaN NaN NaN NaN NaN NaN 164.07 1 159.03 158.53 159.53 -5.0446 0 0 0 0.22632 1 31968 31968 0 0 1 14908 6219 9767 9770 14990 14990 0.21043898424409235 FKLGKAGG 8 Unmodified _FKLGKAGG_ 0 0 0 ENST00000374825.8_1_6:32948646-32949051:+|nuORF ENST00000374825.8_1_6:32948646-32949051:+|nuORF ENST00000374825.8_1_6:32948646-32949051:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 389.5550842285156 2 389.234513 776.454474 -0.80873 -0.00031479 1.1691 0.00045505 0.36035 0.00014026 389.23487147269776 80.491 0.73189 76.803 76.446 77.178 -3.6879 42 20 3 0 0 0 8448 1 15339 15339 0.0082765 0 1 2700800 14909 9230 9768 9771 14991 14991 0.057304519054810044 FKLIWYRMFYC 11 Unmodified _FKLIWYRMFYC_ 0 0 0 REV__RASGRP3|p.N237Ifs*5|1|0.36|ENSG00000152689|chr2:33524447-33524447|A/-|frameshift_variant REV__RASGRP3|p.N237Ifs*5|1|0.36|ENSG00000152689|chr2:33524447-33524447|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3900146484375 2 785.390893 1568.76723 NaN NaN NaN NaN NaN NaN NaN 41.722 1 39.116 38.616 39.616 -2.606 0 0 0 0.22632 1 7491 7491 0.094841 0.094841 1 + 14910 17119 9769 9772 14992 14992 0.0056007119260357285 FKLRRMRKYWN 11 Unmodified _FKLRRMRKYWN_ 0 0 0 ENST00000480568.1_1:147594391-147596156:-|nuORF ENST00000480568.1_1:147594391-147596156:-|nuORF ENST00000480568.1_1:147594391-147596156:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2686157226562 3 533.301395 1596.88236 NaN NaN NaN NaN NaN NaN NaN 120.38 1 120.38 119.88 120.88 0 0 0 0 0.22632 1 23731 23731 0.58532 0.49048 1 14911 10357 9770 9773 14993 14993 0.10778936438623532 FKMILTSKLA 10 Unmodified _FKMILTSKLA_ 0 0 0 tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3297119140625 2 576.346477 1150.6784 NaN NaN NaN NaN NaN NaN NaN 151.7 1 146.53 146.03 147.03 -5.1759 0 0 0 0.22588 1 29399 29399 8.7454 2.5396 1 14912 25952 9771 9774 14994 14994 0.10908979224586801 FKMSKRMYPHR 11 Unmodified _FKMSKRMYPHR_ 0 0 0 ENSG00000137573|ENST00000402687|SULF1;SULF1|p.F343Lfs*7|2|0.2|ENSG00000137573|chr8:69601791-69601791|T/-|frameshift_variant ENSG00000137573|ENST00000402687|SULF1 ENSG00000137573|ENST00000402687|SULF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 494.23443603515625 3 494.260319 1479.75913 NaN NaN NaN NaN NaN NaN NaN 119.21 1 119.21 118.71 119.71 0 0 0 0 0.22632 1 23488 23488 0.172 0 1 14913 4094 9772 9775 14995 14995 0.0384393699582688 FKNQRWGEWWK 11 Unmodified _FKNQRWGEWWK_ 0 0 0 ENST00000590040.5_1_2:179388144-179407011:+|nuORF ENST00000590040.5_1_2:179388144-179407011:+|nuORF ENST00000590040.5_1_2:179388144-179407011:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2674560546875 3 522.265115 1563.77352 NaN NaN NaN NaN NaN NaN NaN 150.68 1 145.95 145.45 146.45 -4.7323 0 0 0 0.22632 1 29931 29931 0.50596 0 1 14914 11594 9773 9776 14996 14996 0.014180487399698904 FKRKFLPES 9 Unmodified _FKRKFLPES_ 0 0 0 REV__ENST00000394095.6_1_3:101062560-101062668:-|nuORF REV__ENST00000394095.6_1_3:101062560-101062668:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3190307617188 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 60.165 1 60.165 59.665 60.665 0 0 0 0 0.19657 1 11532 11532 4.897 4.0521 1 + 14915 21243 9774 9777 14997 14997 0.08057997639662062 FKRKMRKIAVL 11 Unmodified _FKRKMRKIAVL_ 0 0 0 REV__MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant REV__MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 695.61328125 2 695.447391 1388.88023 NaN NaN NaN NaN NaN NaN NaN 178.41 1 178.41 177.91 178.91 0 0 0 0 0.22632 1 36962 36962 0 0 1 + 14916 15266 9775 9778 14998 14998 0.20134507700822724 FKRKRLYFKRK 11 Unmodified _FKRKRLYFKRK_ 0 0 0 REV__ENST00000342992.10_3_2:179540701-179542581:-|nuORF REV__ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4050903320312 2 785.496262 1568.97797 NaN NaN NaN NaN NaN NaN NaN 102.01 1 97.823 97.323 98.323 -4.1861 0 0 0 0.23698 1 20045 20045 1.3295 0 1 + 14917 20727 9776 9779 14999 14999 0.21624032621139122 FKRKRLYFKRK 11 Unmodified _FKRKRLYFKRK_ 0 0 0 REV__ENST00000342992.10_3_2:179540701-179542581:-|nuORF REV__ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4109497070312 2 785.496262 1568.97797 NaN NaN NaN NaN NaN NaN NaN 101.31 1 97.013 96.513 97.513 -4.297 0 0 0 0.23698 1 19385 19385 1.3295 0 1 + 14918 20727 9776 9779 15000 15000 0.21624032621139122 FKRKRLYFKRK 11 Unmodified _FKRKRLYFKRK_ 0 0 0 REV__ENST00000342992.10_3_2:179540701-179542581:-|nuORF REV__ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4102172851562 2 785.496262 1568.97797 NaN NaN NaN NaN NaN NaN NaN 111.04 1 106.55 106.05 107.05 -4.4915 0 0 0 0.23698 1 21311 21311 1.3295 0 1 + 14919 20727 9776 9779 15001 15001 0.21624032621139122 FKRKYKVK 8 Unmodified _FKRKYKVK_ 0 0 0 ENSG00000105373|ENST00000246802|NOP53;ENST00000598285.1_1_19:48259921-48260259:+|nuORF ENSG00000105373|ENST00000246802|NOP53 ENSG00000105373|ENST00000246802|NOP53 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 366.2140808105469 3 366.237838 1095.69168 0.28685 0.00010506 0.60379 0.00022113 0.89064 0.00032619 366.23803035639145 86.919 0.94055 82.969 82.332 83.273 -3.9503 54 26 3 0 0 0 8448 1 16534 16534 3.2813 3.2813 1 1821300 14920 2302 9777 9780 15002 15002 0.14766598118831098 FKRKYKVK 8 Unmodified _FKRKYKVK_ 0 0 0 ENSG00000105373|ENST00000246802|NOP53;ENST00000598285.1_1_19:48259921-48260259:+|nuORF ENSG00000105373|ENST00000246802|NOP53 ENSG00000105373|ENST00000246802|NOP53 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 366.237838 1095.69168 -0.30994 -0.00011351 1.279 0.00046842 0.96908 0.00035491 366.2382786036243 86.724 1.1027 82.997 82.296 83.399 -3.727 0.014211 0.00039541 NaN 3.2813 47 30 2 NaN NaN NaN NaN 0 NaN NaN 0 3989200 14921 2302 9777 9780 0.14766598118831098 FKRKYKVK 8 Unmodified _FKRKYKVK_ 0 0 0 ENSG00000105373|ENST00000246802|NOP53;ENST00000598285.1_1_19:48259921-48260259:+|nuORF ENSG00000105373|ENST00000246802|NOP53 ENSG00000105373|ENST00000246802|NOP53 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 366.237838 1095.69168 0.28685 0.00010506 0.60379 0.00022113 0.89064 0.00032619 366.23803035639145 86.919 0.94055 82.969 82.332 83.273 -3.9503 -0.014211 -0.00034647 NaN 3.2813 54 26 3 NaN NaN NaN NaN 0 NaN NaN 0 1821300 14922 2302 9777 9780 0.14766598118831098 FKRSGYRREF 10 Unmodified _FKRSGYRREF_ 0 0 0 REV__ENSG00000134882|ENST00000403766|UBAC2 REV__ENSG00000134882|ENST00000403766|UBAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.2419738769531 3 449.242311 1344.7051 0.082454 3.7042E-05 -1.027 -0.00046138 -0.94458 -0.00042434 449.24181324059646 32.156 0.3934 29.926 29.76 30.153 -2.2305 17 10 2 0 0 0 0.76317 1 5866 5866 1.5923 0.26264 1 508180 + 14923 16234 9778 9781 15003 15003 0.04653804160147956 FKRSGYRREF 10 Unmodified _FKRSGYRREF_ 0 0 0 REV__ENSG00000134882|ENST00000403766|UBAC2 REV__ENSG00000134882|ENST00000403766|UBAC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 449.242311 1344.7051 0.26071 0.00011712 -0.93033 -0.00041794 -0.66962 -0.00030082 449.2416370144088 29.952 0.37935 29.952 29.644 30.024 0 0.015141 5.195E-05 NaN 1.5923 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 783430 + 14924 16234 9778 9781 0.04653804160147956 FKRSGYRREF 10 Unmodified _FKRSGYRREF_ 0 0 0 REV__ENSG00000134882|ENST00000403766|UBAC2 REV__ENSG00000134882|ENST00000403766|UBAC2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 449.242311 1344.7051 0.082454 3.7042E-05 -1.027 -0.00046138 -0.94458 -0.00042434 449.24181324059646 32.156 0.3934 29.926 29.76 30.153 -2.2305 -0.011392 -7.8376E-05 NaN 1.5923 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 508180 + 14925 16234 9778 9781 0.04653804160147956 FKRSGYRREF 10 Unmodified _FKRSGYRREF_ 0 0 0 REV__ENSG00000134882|ENST00000403766|UBAC2 REV__ENSG00000134882|ENST00000403766|UBAC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 449.242311 1344.7051 0.22613 0.00010159 -0.98027 -0.00044038 -0.75414 -0.00033879 449.24188549171316 31.949 0.48817 29.923 29.694 30.182 -2.0264 -0.014416 -1.5357E-05 NaN 1.5923 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 691300 + 14926 16234 9778 9781 0.04653804160147956 FKSFEYKE 8 Unmodified _FKSFEYKE_ 0 0 0 ENST00000453784.2_1_21:25801143-25810668:+|nuORF ENST00000453784.2_1_21:25801143-25810668:+|nuORF ENST00000453784.2_1_21:25801143-25810668:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20880126953125 3 359.846564 1076.51786 0.53831 0.00019371 -2.089 -0.00075171 -1.5507 -0.00055801 360.1807223888636 23.348 0.2132 21.795 21.727 21.94 -1.5532 7 5 2 0 0 0 0.81659 1 4031 4031 3.5965 0.31518 1 196170 14927 10009 9779 9782 15004 15004 -0.017336521679453654 FKSGLDSIAQ 10 Unmodified _FKSGLDSIAQ_ 0 0 0 REV__tr|U7T719|U7T719_FUSNUPhagetailtapemeasureprotein,TP901family,coreregionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00086PE=4SV=1 REV__tr|U7T719|U7T719_FUSNUPhagetailtapemeasureprotein,TP901family,coreregionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00086PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2816162109375 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 54.849 1 51.965 51.465 52.465 -2.8837 0 0 0 2.8426 1 10479 10479 0.26539 0.058532 1 + 14928 25459 9780 9783 15005 15005 0.02053135235018999 FKSSGFNTR 9 Unmodified _FKSSGFNTR_ 0 0 0 REV__nc|ENSG00000038382|O75962-2|TRIO REV__nc|ENSG00000038382|O75962-2|TRIO MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2680053710938 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 21.787 1 21.787 21.287 22.287 0 0 0 0 0.19636 1 3661 3661 2.4985 0 1 + 14929 14040 9781 9784 15006 15006 3.401640651645721E-05 FKTLPEKAAF 10 Unmodified _FKTLPEKAAF_ 0 0 0 ENST00000368966.9_3_6:109615628-109650288:+|nuORF ENST00000368966.9_3_6:109615628-109650288:+|nuORF ENST00000368966.9_3_6:109615628-109650288:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3297729492188 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 163.3 1 158.25 157.75 158.75 -5.0446 0 0 0 2.8426 1 31770 31770 0.043787 0 1 14930 9104 9782 9785 15007 15007 0.06935175545504535 FKTQYRSL 8 Unmodified _FKTQYRSL_ 0 0 0 REV__nc|ENSG00000121289|Q96ST8-3|CEP89 REV__nc|ENSG00000121289|Q96ST8-3|CEP89 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2666015625 2 521.787641 1041.56073 -0.23968 -0.00012506 1.9646 0.0010251 1.7249 0.00090005 521.789406760985 77.546 0.24725 74.083 73.934 74.181 -3.4633 7 6 2 0 0 0 8448 1 15131 15131 3.2813 0.78282 1 1074100 + 14931 15650 9783 9786 15008 15008 0.04161162680134112 FKTRDKEY 8 Unmodified _FKTRDKEY_ 0 0 0 ENSG00000169991|ENST00000455833|IFFO2 ENSG00000169991|ENST00000455833|IFFO2 ENSG00000169991|ENST00000455833|IFFO2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7814331054688 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 72.376 1 68.749 68.249 69.249 -3.6275 0 0 0 0.23312 1 13669 13669 6.2058 6.078 1 14932 6028 9784 9787 15009 15009 0.01120554954900399 FKVKVLPTY 9 Unmodified _FKVKVLPTY_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7933959960938 2 547.83406 1093.65357 NaN NaN NaN NaN NaN NaN NaN 134.18 1 134.18 133.68 134.68 0 0 0 0 0.23508 1 26557 26557 4.756 2.4533 1 14933 3982;10375 9785 9788 15010 15010 0.11048667413524527 FLAAILKGV 9 Unmodified _FLAAILKGV_ 0 0 0 nc|ENSG00000211957|A0A0C4DH35|IGHV3-35;nc|ENSG00000211943|A0A0B4J1V0|IGHV3-15 nc|ENSG00000211957|A0A0C4DH35|IGHV3-35 nc|ENSG00000211957|A0A0C4DH35|IGHV3-35 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.204833984375 3 311.204023 930.590239 NaN NaN NaN NaN NaN NaN NaN 99.927 1 95.937 95.437 96.437 -3.9895 0 0 0 0.23508 1 19191 19191 0.26902 0 1 14934 12584 9786 9789 15011 15011 0.122167266962947 FLAAKEKQF 9 Unmodified _FLAAKEKQF_ 0 0 0 REV__ENST00000435296.2_1_7:128095936-128097326:+|nuORF REV__ENST00000435296.2_1_7:128095936-128097326:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2784423828125 2 541.305667 1080.59678 0.30307 0.00016406 -0.46492 -0.00025166 -0.16185 -8.7609E-05 541.3052774232584 131.88 1.2183 131.88 131.15 132.37 0 53 34 2 0 0 0 0.42842 1 25948 25948 0.40827 0 1 6548900 + 14935 21657 9787 9790 15012 15012 0.059706198569983826 FLAEDALNTV 10 Unmodified _FLAEDALNTV_ 0 0 0 nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF nc|ENSG00000204580|Q08345-2|DDR1 nc|ENSG00000204580|Q08345-2|DDR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7687377929688 2 546.782222 1091.54989 0.13467 7.3636E-05 0.040294 2.2032E-05 0.17497 9.5668E-05 546.7822569435579 146.25 0.58705 141.14 140.79 141.38 -5.1108 34 16 3 0 0 0 0.29353 2 28258 28258;28291 37.974 5.0233 1 6683100 14936 7592 9788 9791 15013;15014 15013 0.007777155151643456 FLAEDALNTV 10 Unmodified _FLAEDALNTV_ 0 0 0 nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF nc|ENSG00000204580|Q08345-2|DDR1 nc|ENSG00000204580|Q08345-2|DDR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.782222 1091.54989 0.33246 0.00018179 -0.074216 -4.058E-05 0.25825 0.00014121 546.7821301606846 140.91 0.58093 140.91 140.54 141.12 0 -0.10658 1.6811E-05 NaN 37.974 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 5537700 14937 7592 9788 9791 0.007777155151643456 FLAEDALNTV 10 Unmodified _FLAEDALNTV_ 0 0 0 nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF nc|ENSG00000204580|Q08345-2|DDR1 nc|ENSG00000204580|Q08345-2|DDR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.782222 1091.54989 0.27452 0.0001501 -0.079388 -4.3408E-05 0.19513 0.0001067 546.7821511233225 145.65 0.76817 140.98 140.65 141.42 -4.6694 -0.032626 1.1155E-05 NaN 37.974 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 10181000 14938 7592 9788 9791 0.007777155151643456 FLAEDALNTV 10 Unmodified _FLAEDALNTV_ 0 0 0 nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF nc|ENSG00000204580|Q08345-2|DDR1 nc|ENSG00000204580|Q08345-2|DDR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.782222 1091.54989 0.39357 0.0002152 -0.22633 -0.00012375 0.16724 9.1445E-05 546.7820126770494 146.04 0.83076 141.04 140.6 141.43 -5 0.020189 -0.00014954 NaN 37.974 41 23 2 NaN NaN NaN NaN 0 NaN NaN 0 7156500 14939 7592 9788 9791 0.007777155151643456 FLAEEQAGL 9 Unmodified _FLAEEQAGL_ 0 0 0 ENST00000515223.1_1_5:180659598-180660003:+|nuORF;ENST00000515834.1_1_5:180657548-180660003:+|nuORF;nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;TRIM41|p.G497Vfs*70|1|0.49|ENSG00000146063|chr5:181234369-181234381|GGGGCTGGGCGGT/-|frameshift_variant;ENSG00000146063|ENST00000315073|TRIM41 ENST00000515223.1_1_5:180659598-180660003:+|nuORF ENST00000515223.1_1_5:180659598-180660003:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2554016113281 2 489.250557 976.486562 0.43184 0.00021128 -1.414 -0.00069179 -0.98213 -0.00048051 489.2501411892205 108.29 0.6588 104.16 103.77 104.43 -4.135 35 18 3 0 0 0 0.46541 1 20843 20843 21.747 0.87544 1 1275000 14940 4636 9789 9792 15015 15015 -0.002622252020501037 FLAEEQAGL 9 Unmodified _FLAEEQAGL_ 0 0 0 ENST00000515223.1_1_5:180659598-180660003:+|nuORF;ENST00000515834.1_1_5:180657548-180660003:+|nuORF;nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;TRIM41|p.G497Vfs*70|1|0.49|ENSG00000146063|chr5:181234369-181234381|GGGGCTGGGCGGT/-|frameshift_variant;ENSG00000146063|ENST00000315073|TRIM41 ENST00000515223.1_1_5:180659598-180660003:+|nuORF ENST00000515223.1_1_5:180659598-180660003:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.250557 976.486562 -0.39105 -0.00019132 -0.51835 -0.0002536 -0.9094 -0.00044493 489.25053687813204 108.39 0.66153 104.07 103.69 104.35 -4.32 -0.023836 0.00064916 NaN 21.747 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1723500 14941 4636 9789 9792 -0.002622252020501037 FLAEEQAGL 9 Unmodified _FLAEEQAGL_ 0 0 0 ENST00000515223.1_1_5:180659598-180660003:+|nuORF;ENST00000515834.1_1_5:180657548-180660003:+|nuORF;nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;TRIM41|p.G497Vfs*70|1|0.49|ENSG00000146063|chr5:181234369-181234381|GGGGCTGGGCGGT/-|frameshift_variant;ENSG00000146063|ENST00000315073|TRIM41 ENST00000515223.1_1_5:180659598-180660003:+|nuORF ENST00000515223.1_1_5:180659598-180660003:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.250557 976.486562 0.0045987 2.2499E-06 -2.023 -0.00098975 -2.0184 -0.0009875 489.25048681016085 108.5 0.99672 104.05 103.4 104.4 -4.4518 -0.040986 -0.00082313 NaN 21.747 39 28 2 NaN NaN NaN NaN 0 NaN NaN 0 1384800 14942 4636 9789 9792 -0.002622252020501037 FLAFKKIK 8 Unmodified _FLAFKKIK_ 0 0 0 ENST00000465541.1_1_13:51524391-51530607:+|nuORF ENST00000465541.1_1_13:51524391-51530607:+|nuORF ENST00000465541.1_1_13:51524391-51530607:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.2200012207031 3 332.219784 993.637523 NaN NaN NaN NaN NaN NaN NaN 167.19 1 162.24 161.74 162.74 -4.948 0 0 0 0.21486 1 32863 32863 0 0 1 14943 10120 9790 9793 15016 15016 0.14045005967284396 FLAFKKIKLSD 11 Unmodified _FLAFKKIKLSD_ 0 0 0 ENST00000465541.1_1_13:51524391-51530607:+|nuORF ENST00000465541.1_1_13:51524391-51530607:+|nuORF ENST00000465541.1_1_13:51524391-51530607:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2282409667969 3 437.267463 1308.78056 -0.098879 -4.3237E-05 0.30785 0.00013461 0.20897 9.1376E-05 437.6021075673494 111.9 0.28067 107.41 107.2 107.48 -4.4915 10 7 2 0 0 0 0.66234 1 21482 21482 0.50596 0.5 1 589520 14944 10120 9791 9794 15017 15017 0.1385196856786024 FLANVSTVL 9 Unmodified _FLANVSTVL_ 0 0 0 CON__P01966 CON__P01966 CON__P01966 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7854309082031 2 482.279118 962.543683 0.23537 0.00011351 -0.90296 -0.00043548 -0.6676 -0.00032197 482.2785568221357 164.67 0.31195 159.62 159.49 159.8 -5.0446 12 8 2 0 0 0 0.027812 1 32143 32143 104.8 44.41 1 6554900 + 14945 651 9792 9795 15018 15018 0.06091242074330694 FLANVSTVL 9 Unmodified _FLANVSTVL_ 0 0 0 CON__P01966 CON__P01966 CON__P01966 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 482.279118 962.543683 0.25624 0.00012358 0.057207 2.759E-05 0.31344 0.00015117 482.2790108186168 164.29 0.27701 159.5 159.4 159.68 -4.7898 -0.052004 0.00019482 NaN 104.8 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 6129900 + 14946 651 9792 9795 0.06091242074330694 FLANVSTVL 9 Unmodified _FLANVSTVL_ 0 0 0 CON__P01966 CON__P01966 CON__P01966 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.279118 962.543683 0.39105 0.0001886 0.011113 5.3594E-06 0.40217 0.00019396 482.27908374807265 164.6 0.31601 159.53 159.41 159.72 -5.0648 -0.018813 0.00015036 NaN 104.8 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 7979600 + 14947 651 9792 9795 0.06091242074330694 FLAPPPHR 8 Unmodified _FLAPPPHR_ 0 0 0 ENST00000482899.1_1_7:150737010-150738273:+|nuORF ENST00000482899.1_1_7:150737010-150738273:+|nuORF ENST00000482899.1_1_7:150737010-150738273:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.2168273925781 3 312.1801 933.518471 NaN NaN NaN NaN NaN NaN NaN 78.347 1 78.347 77.847 78.847 0 0 0 0 0.21486 1 15247 15247 0.40072 0 1 14948 10406 9793 9796 15019 15019 0.04905232062412779 FLAPPPHR 8 Unmodified _FLAPPPHR_ 0 0 0 ENST00000482899.1_1_7:150737010-150738273:+|nuORF ENST00000482899.1_1_7:150737010-150738273:+|nuORF ENST00000482899.1_1_7:150737010-150738273:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.2173156738281 3 312.1801 933.518471 NaN NaN NaN NaN NaN NaN NaN 80.997 1 80.997 80.497 81.497 0 0 0 0 0.21486 1 15771 15771 0.40072 0 1 14949 10406 9793 9796 15020 15020 0.04905232062412779 FLAPPPHR 8 Unmodified _FLAPPPHR_ 0 0 0 ENST00000482899.1_1_7:150737010-150738273:+|nuORF ENST00000482899.1_1_7:150737010-150738273:+|nuORF ENST00000482899.1_1_7:150737010-150738273:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 312.14447021484375 3 312.1801 933.518471 NaN NaN NaN NaN NaN NaN NaN 112.89 1 108.36 107.86 108.86 -4.5259 0 0 0 0.21486 1 21671 21671 0.40072 0 1 14950 10406 9793 9796 15021 15021 0.04905232062412779 FLAPPPHR 8 Unmodified _FLAPPPHR_ 0 0 0 ENST00000482899.1_1_7:150737010-150738273:+|nuORF ENST00000482899.1_1_7:150737010-150738273:+|nuORF ENST00000482899.1_1_7:150737010-150738273:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 312.14453125 3 312.1801 933.518471 NaN NaN NaN NaN NaN NaN NaN 125.46 1 120.7 120.2 121.2 -4.7681 0 0 0 0.21486 1 24080 24080 0.40072 0 1 14951 10406 9793 9796 15022 15022 0.04905232062412779 FLARCVAQ 8 Unmodified _FLARCVAQ_ 0 0 0 REV__nc|ENSG00000134278|Q08AE8-2|SPIRE1 REV__nc|ENSG00000134278|Q08AE8-2|SPIRE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 454.2350158691406 2 454.244555 906.474557 NaN NaN NaN NaN NaN NaN NaN 98.154 1 98.154 97.654 98.654 0 0 0 0 0.1742 1 19238 19238 1.7423 0 1 + 14952 16202 9794 9797 15023 15023 0.017578795737790642 FLASGVRTE 9 Unmodified _FLASGVRTE_ 0 0 0 REV__ENSG00000100665|ENST00000557004|SERPINA4 REV__ENSG00000100665|ENST00000557004|SERPINA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2644348144531 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 52.217 1 49.153 48.653 49.653 -3.0634 0 0 0 0.19687 1 9634 9634 8.1555 0 1 + 14953 14733 9795 9798 15024 15024 0.02332883409144415 FLASTRRTSL 10 Unmodified _FLASTRRTSL_ 0 0 0 REV__ENST00000439174.6_1_17:63010421-63010466:-|nuORF REV__ENST00000439174.6_1_17:63010421-63010466:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3304443359375 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 163.31 1 158.25 157.75 158.75 -5.0648 0 0 0 0.22566 1 31773 31773 16.149 0 1 + 14954 21691 9796 9799 15025 15025 0.0765590814596635 FLATGGKYV 9 Unmodified _FLATGGKYV_ 0 0 0 nc|ENSG00000100162|Q9NSP4-2|CENPM;ENST00000396437.3_1_22:42341142-42343146:-|nuORF nc|ENSG00000100162|Q9NSP4-2|CENPM nc|ENSG00000100162|Q9NSP4-2|CENPM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72491455078125 2 478.26601 954.517468 NaN NaN NaN NaN NaN NaN NaN 51.923 1 49.041 48.541 49.541 -2.8824 0 0 0 0.23508 1 9871 9871 11.64 0.52583 1 14955 9445 9797 9800 15026 15026 0.0383897290286086 FLAVRENL 8 Unmodified _FLAVRENL_ 0 0 0 ABCA8|p.T574A|1|0.08|ENSG00000141338|chr17:68919369-68919369|T/C|missense_variant ABCA8|p.T574A|1|0.08|ENSG00000141338|chr17:68919369-68919369|T/C|missense_variant ABCA8|p.T574A|1|0.08|ENSG00000141338|chr17:68919369-68919369|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7691345214844 2 481.276909 960.539266 0.26335 0.00012675 -0.049432 -2.3791E-05 0.21392 0.00010295 481.27685290893527 115.58 0.62927 111 110.63 111.26 -4.5815 31 17 2 0 0 0 0.047597 4 22209 22155;22188;22198;22209 104.8 23.186 1 3847200 14956 14 9798 9801 15027;15028;15029;15030 15030 0.05741777651417124 FLCLASRNY 9 Unmodified _FLCLASRNY_ 0 0 0 ENST00000480646.1_1_1:1324830-1326370:-|nuORF;ENST00000496007.5_1_1:1324344-1326370:-|nuORF;ENST00000480479.5_1_1:1324040-1326370:-|nuORF;ENST00000481223.6_1_1:1322613-1326370:-|nuORF ENST00000480646.1_1_1:1324830-1326370:-|nuORF ENST00000480646.1_1_1:1324830-1326370:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77197265625 2 543.773677 1085.5328 NaN NaN NaN NaN NaN NaN NaN 122.04 1 122.04 121.54 122.54 0 0 0 0 0.23411 1 24058 24058 13.508 4.1604 1 14957 10356 9799 9802 15031 15031 -0.006544835716113084 FLCNMICL 8 Unmodified _FLCNMICL_ 0 0 0 ENST00000355765.10_1_14:45584217-45584328:+|nuORF ENST00000355765.10_1_14:45584217-45584328:+|nuORF ENST00000355765.10_1_14:45584217-45584328:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7239685058594 2 478.723752 955.432952 NaN NaN NaN NaN NaN NaN NaN 137.17 1 132.53 132.03 133.03 -4.6413 0 0 0 0.21181 1 27069 27069 15.768 1.1865 1 14958 8962 9800 9803 15032 15032 -0.0465476050143252 FLDAIHPTE 9 Unmodified _FLDAIHPTE_ 0 0 0 nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX nc|ENSG00000114439|Q8WY36-2|BBX nc|ENSG00000114439|Q8WY36-2|BBX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2652587890625 2 521.763832 1041.51311 0.6126 0.00031963 0.17929 9.3546E-05 0.79189 0.00041318 521.7636948256685 113.45 0.56236 109.18 108.91 109.48 -4.2726 27 15 2 0 0 0 0.38188 1 21862 21862 26.884 0.61551 1 1350100 14959 2790 9801 9804 15033 15033 -0.00598536310712916 FLDASGAKLDY 11 Unmodified _FLDASGAKLDY_ 0 0 0 BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.284912109375 2 600.300778 1198.587 0.46247 0.00027762 -0.185 -0.00011105 0.27747 0.00016657 600.3006485804592 109.76 1.1036 109.76 109.23 110.33 0 110 31 5 0 0 0 0.42751 1 21563 21563 28.234 8.9766 1 185980000 14960 347 9802 9805 15034 15034 -0.004346129390341957 FLDASGAKLDY 11 Unmodified _FLDASGAKLDY_ 0 0 0 BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2957153320312 2 600.300778 1198.587 0.61384 0.00036849 -0.38154 -0.00022904 0.2323 0.00013945 600.3005237734662 114.18 1.3217 109.87 109.37 110.69 -4.3135 135 37 6 0 0 0 0.444 1 21950 21950 30.703 11.446 1 203800000 14961 347 9802 9805 15035 15035 -0.004346129390341957 FLDCCCCCCCE 11 Unmodified _FLDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7698974609375 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 130.36 1 130.36 129.86 130.86 0 0 0 0 0.22632 1 25765 25765 0 0 1 14962 6036 9803 9806 15036 15036 -0.31504650452575333 FLDCCCCCCCE 11 Unmodified _FLDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7547607421875 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 148.61 1 148.61 148.11 149.11 0 0 0 0 0.23698 1 29743 29743 0 0 1 14963 6036 9803 9806 15037 15037 -0.31504650452575333 FLDCCCCCCCE 11 Unmodified _FLDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7615966796875 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 123.39 1 118.81 118.31 119.31 -4.5757 0 0 0 0.22632 1 24320 24320 0 0 1 14964 6036 9803 9806 15038 15038 -0.31504650452575333 FLDCCCCCCCE 11 Unmodified _FLDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7606811523438 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 153.65 1 148.88 148.38 149.38 -4.7684 0 0 0 0.23698 1 30535 30535 1.3295 1.0225 1 14965 6036 9803 9806 15039 15039 -0.31504650452575333 FLDCCCCCCCE 11 Unmodified _FLDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7615966796875 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 53.369 1 50.281 49.781 50.781 -3.0876 0 0 0 0.22632 1 9824 9824 0 0 1 14966 6036 9803 9806 15040 15040 -0.31504650452575333 FLDCCCCCCCE 11 Unmodified _FLDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7662963867188 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 63.178 1 59.763 59.263 60.263 -3.4158 0 0 0 0.23698 1 11798 11798 0.35063 0.35063 1 14967 6036 9803 9806 15041 15041 -0.31504650452575333 FLDCCCCCCCE 11 Unmodified _FLDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.75537109375 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 64.254 1 60.838 60.338 61.338 -3.4158 0 0 0 0.23698 1 12019 12019 0 0 1 14968 6036 9803 9806 15042 15042 -0.31504650452575333 FLDCCCCCCCE 11 Unmodified _FLDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7647094726562 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 71.982 1 68.354 67.854 68.854 -3.6275 0 0 0 0.22632 1 13585 13585 0 0 1 14969 6036 9803 9806 15043 15043 -0.31504650452575333 FLDCCCCCCCE 11 Unmodified _FLDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7647094726562 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 71.994 1 68.367 67.867 68.867 -3.6275 0 0 0 0.23698 1 13587 13587 1.4819 1.1313 1 14970 6036 9803 9806 15044 15044 -0.31504650452575333 FLDCCCCCCCE 11 Unmodified _FLDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7757568359375 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 134.18 1 129.3 128.8 129.8 -4.8726 0 0 0 0.23698 1 25775 25775 0 0 1 14971 6036 9803 9806 15045 15045 -0.31504650452575333 FLDCCCCCCCE 11 Unmodified _FLDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.753662109375 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 154.93 1 149.65 149.15 150.15 -5.2854 0 0 0 0.23698 1 30047 30047 0 0 1 14972 6036 9803 9806 15046 15046 -0.31504650452575333 FLDCCCCCCCE 11 Unmodified _FLDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.771728515625 2 622.655711 1243.29687 NaN NaN NaN NaN NaN NaN NaN 147.91 1 142.85 142.35 143.35 -5.0595 0 0 0 0.23698 1 28642 28642 0.30703 0.30703 1 14973 6036 9803 9806 15047 15047 -0.31504650452575333 FLDDNQIVT 9 Unmodified _FLDDNQIVT_ 0 0 0 ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1;ENST00000461893.5_1_1:1720336-1724757:-|nuORF ENSG00000078369|ENST00000378609|GNB1 ENSG00000078369|ENST00000378609|GNB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.268798828125 2 532.766571 1063.51859 0.19112 0.00010182 0.5853 0.00031183 0.77642 0.00041365 532.766482985747 109.92 0.81007 105.47 105.09 105.9 -4.4518 38 22 2 0 0 0 0.041554 2 21119 21059;21119 74.929 18.752 1 7004600 14974 1578 9804 9807 15048;15049 15049 -0.010628575189002731 FLDDSTALY 9 Unmodified _FLDDSTALY_ 0 0 0 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6910400390625 2 522.747847 1043.48114 0.19253 0.00010064 0.23608 0.00012341 0.42861 0.00022406 522.7478984198493 128.72 0.91772 128.72 128.24 129.16 0 57 25 3 0 0 0 0.52414 1 25408 25408 18.135 5.6034 1 8282600 14975 1990 9805 9808 15050 15050 -0.03885948784522952 FLDDSTALY 9 Unmodified _FLDDSTALY_ 0 0 0 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.698486328125 2 522.747847 1043.48114 -0.20799 -0.00010872 0.57085 0.00029841 0.36286 0.00018969 522.7481163568125 133.73 0.77261 129.09 128.72 129.49 -4.6399 59 21 3 0 0 0 0.52414 1 26395 26395 18.135 6.4947 1 7518400 14976 1990 9805 9808 15051 15051 -0.03885948784522952 FLDDSTALY 9 Unmodified _FLDDSTALY_ 0 0 0 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.689697265625 2 522.747847 1043.48114 -0.60135 -0.00031436 0.89829 0.00046958 0.29694 0.00015522 522.7482751094981 133.9 1.0349 129.03 128.72 129.75 -4.8726 63 29 3 0 0 0 0.52414 1 25708 25708 18.135 5.8943 1 5557000 14977 1990 9805 9808 15052 15052 -0.03885948784522952 FLDDSTALY 9 Unmodified _FLDDSTALY_ 0 0 0 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6989135742188 2 522.747847 1043.48114 0.25702 0.00013436 0.1278 6.6807E-05 0.38482 0.00020116 522.7478234759236 133.93 0.92079 129.11 128.56 129.48 -4.8175 60 25 3 0 0 0 0.52414 1 25741 25741 18.135 7.9516 1 9612500 14978 1990 9805 9808 15053 15053 -0.03885948784522952 FLDDTNTKRY 10 Unmodified _FLDDTNTKRY_ 0 0 0 nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-3|DOCK9 nc|ENSG00000088387|Q9BZ29-3|DOCK9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2528991699219 3 424.878815 1271.61462 -0.34296 -0.00014572 1.4322 0.00060853 1.0893 0.00046282 425.21411186057253 50.587 0.34968 47.536 47.363 47.713 -3.0517 16 9 2 0 0 0 0.87015 1 9327 9327 13.519 8.2218 1 361510 14979 1730 9806 9809 15054 15054 -0.010327096787932533 FLDDTNTKRY 10 Unmodified _FLDDTNTKRY_ 0 0 0 nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-3|DOCK9 nc|ENSG00000088387|Q9BZ29-3|DOCK9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 424.878815 1271.61462 0.0085915 3.6503E-06 0.61843 0.00026276 0.62702 0.00026641 424.87873908735423 50.659 0.30762 47.614 47.46 47.768 -3.0453 0.039111 -0.00048372 NaN 13.519 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 761430 14980 1730 9806 9809 -0.010327096787932533 FLDDVVHSL 9 Unmodified _FLDDVVHSL_ 0 0 0 ACTR3B-JMJD1C|1|fusion;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.N429Ifs*32|1|0.1|ENSG00000171988|chr10:63214881-63214881|T/-|frameshift_variant;JMJD1C|p.A1206Efs*30|1|0.07|ENSG00000171988|chr10:63208052-63208053|-/GTAAAGTT|frameshift_variant ACTR3B-JMJD1C|1|fusion ACTR3B-JMJD1C|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2597045898438 2 522.771657 1043.52876 0.1992 0.00010414 -0.16608 -8.682E-05 0.033127 1.7318E-05 522.7715369899967 149.24 0.83414 149.24 148.79 149.62 0 52 23 3 0 0 0 0.037229 1 29911 29911 74.423 51.274 1 8351800 14981 44 9807 9810 15055 15055 0.008737502063468128 FLDDVVHSL 9 Unmodified _FLDDVVHSL_ 0 0 0 ACTR3B-JMJD1C|1|fusion;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.N429Ifs*32|1|0.1|ENSG00000171988|chr10:63214881-63214881|T/-|frameshift_variant;JMJD1C|p.A1206Efs*30|1|0.07|ENSG00000171988|chr10:63208052-63208053|-/GTAAAGTT|frameshift_variant ACTR3B-JMJD1C|1|fusion ACTR3B-JMJD1C|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2568359375 2 522.771657 1043.52876 -0.074341 -3.8863E-05 0.28931 0.00015124 0.21497 0.00011238 522.7718105230151 153.52 0.78392 148.75 148.4 149.19 -4.7684 38 21 2 0 0 0 0.69192 1 30462 30462 26.884 9.9414 1 4608200 14982 44 9807 9810 15056 15056 0.008737502063468128 FLDDVVHSL 9 Unmodified _FLDDVVHSL_ 0 0 0 ACTR3B-JMJD1C|1|fusion;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.N429Ifs*32|1|0.1|ENSG00000171988|chr10:63214881-63214881|T/-|frameshift_variant;JMJD1C|p.A1206Efs*30|1|0.07|ENSG00000171988|chr10:63208052-63208053|-/GTAAAGTT|frameshift_variant ACTR3B-JMJD1C|1|fusion ACTR3B-JMJD1C|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2692260742188 2 522.771657 1043.52876 -0.49729 -0.00025997 0.83927 0.00043875 0.34199 0.00017878 522.7720891574081 154.37 0.80244 149.09 148.59 149.39 -5.2854 45 22 3 0 0 0 0.029847 1 29938 29938 100.37 64.327 1 3951200 14983 44 9807 9810 15057 15057 0.008737502063468128 FLDDVVHSL 9 Unmodified _FLDDVVHSL_ 0 0 0 ACTR3B-JMJD1C|1|fusion;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.N429Ifs*32|1|0.1|ENSG00000171988|chr10:63214881-63214881|T/-|frameshift_variant;JMJD1C|p.A1206Efs*30|1|0.07|ENSG00000171988|chr10:63208052-63208053|-/GTAAAGTT|frameshift_variant ACTR3B-JMJD1C|1|fusion ACTR3B-JMJD1C|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2783203125 2 522.771657 1043.52876 0.44104 0.00023056 0.021936 1.1467E-05 0.46298 0.00024203 522.7715047687656 154.25 0.73698 149.03 148.69 149.43 -5.2209 49 20 3 0 0 0 0.017753 1 29913 29913 120.45 84.406 1 4456800 14984 44 9807 9810 15058 15058 0.008737502063468128 FLDEECPNYD 10 Unmodified _FLDEECPNYD_ 0 0 0 REV__ENSG00000257093|ENST00000536163|DENND11 REV__ENSG00000257093|ENST00000536163|DENND11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7813110351562 2 622.742436 1243.47032 NaN NaN NaN NaN NaN NaN NaN 72.805 1 69.177 68.677 69.677 -3.6275 0 0 0 0.22588 1 13754 13754 3.9444 0.3479 1 + 14985 19870 9808 9811 15059 15059 -0.1416771922110911 FLDEPTNHL 9 Unmodified _FLDEPTNHL_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7808837890625 2 543.266739 1084.51892 0.15721 8.5405E-05 -0.01805 -9.8058E-06 0.13916 7.5599E-05 543.266630503256 91.198 0.9762 91.198 90.758 91.734 0 79 27 4 0 0 0 0.01249 2 17889 17889;17897 99.799 51.453 1 22775000 14986 1160 9809 9812 15060;15061 15060 -0.019954377990416106 FLDEPTNHL 9 Unmodified _FLDEPTNHL_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7929077148438 2 543.266739 1084.51892 0.16195 8.7982E-05 0.1222 6.6386E-05 0.28415 0.00015437 543.266732693216 95.458 0.96223 91.267 90.721 91.683 -4.1912 77 27 4 0 0 0 0.00016281 2 18229 18229;18275 122.18 67.406 1 24622000 14987 1160 9809 9812 15062;15063 15062 -0.019954377990416106 FLDEPTNHL 9 Unmodified _FLDEPTNHL_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7929077148438 2 543.266739 1084.51892 0.090031 4.8911E-05 0.15596 8.4725E-05 0.24599 0.00013364 543.2667150827923 95.134 0.90965 91.253 90.81 91.72 -3.881 80 25 4 0 0 0 3.738E-05 3 18212 18212;18237;18310 131.27 76.494 1 25533000 14988 1160 9809 9812 15064;15065;15066 15064 -0.019954377990416106 FLDEPTNHL 9 Unmodified _FLDEPTNHL_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.266739 1084.51892 0.2627 0.00014271 -0.050336 -2.7346E-05 0.21236 0.00011537 543.2666494604622 95.268 0.76473 91.218 90.814 91.579 -4.0496 -0.016041 -0.00011737 NaN 131.27 70 21 4 NaN NaN NaN NaN 0 NaN NaN 0 26276000 14989 1160 9809 9812 -0.019954377990416106 FLDESRSTQY 10 Unmodified _FLDESRSTQY_ 0 0 0 nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.762939453125 2 623.290942 1244.56733 0.088384 5.5089E-05 0.29413 0.00018333 0.38251 0.00023842 623.2911737254714 61.675 1.5117 61.675 61.291 62.803 0 145 43 6 0 0 0 3.2763000000000003E-19 1 11847 11847 174.48 122.21 1 494980000 14990 6835 9810 9813 15067 15067 -0.045169889497856275 FLDESRSTQY 10 Unmodified _FLDESRSTQY_ 0 0 0 nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7564086914062 2 623.290942 1244.56733 0.98588 0.00061449 -0.65217 -0.00040649 0.3337 0.00020799 623.2906195418323 64.966 1.5964 61.919 61.456 63.052 -3.047 153 46 6 0 0 0 8.2037E-28 1 12601 12601 162.31 113.97 1 548420000 14991 6835 9810 9813 15068 15068 -0.045169889497856275 FLDESRSTQY 10 Unmodified _FLDESRSTQY_ 0 0 0 nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.764892578125 2 623.290942 1244.56733 0.46836 0.00029192 -0.19707 -0.00012283 0.27129 0.00016909 623.2909034633662 65.367 1.887 61.909 61.538 63.425 -3.4581 176 53 6 0 0 0 2.0453000000000002E-27 1 12238 12238 195.04 156.86 1 535720000 14992 6835 9810 9813 15069 15069 -0.045169889497856275 FLDESRSTQY 10 Unmodified _FLDESRSTQY_ 0 0 0 nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.77099609375 2 623.290942 1244.56733 0.50718 0.00031612 -0.29664 -0.0001849 0.21053 0.00013122 623.2908379233533 65.131 2.0973 61.847 61.454 63.552 -3.2832 195 60 6 0 0 0 8.2037E-28 1 12255 12255 174.48 126.14 1 484310000 14993 6835 9810 9813 15070 15070 -0.045169889497856275 FLDETKLN 8 Unmodified _FLDETKLN_ 0 0 0 REV__ENSG00000107929|ENST00000316157|LARP4B REV__ENSG00000107929|ENST00000316157|LARP4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2763977050781 2 490.258382 978.502212 -0.1386 -6.795E-05 0.0090251 4.4246E-06 -0.12957 -6.3525E-05 490.2585092811137 66.449 0.49157 66.449 66.239 66.731 0 18 13 2 0 0 0 0.78482 1 12857 12857 25.399 2.663 1 1414800 + 14994 15099 9811 9814 15071 15071 0.012100613149982564 FLDETKLN 8 Unmodified _FLDETKLN_ 0 0 0 REV__ENSG00000107929|ENST00000316157|LARP4B REV__ENSG00000107929|ENST00000316157|LARP4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2765808105469 2 490.258382 978.502212 0.10283 5.0415E-05 0.59139 0.00028993 0.69422 0.00034035 490.2584544547738 70.013 0.56016 66.546 66.254 66.814 -3.467 25 15 2 0 0 0 0.9383 1 13254 13254 25.399 0 1 1462500 + 14995 15099 9811 9814 15072 15072 0.012100613149982564 FLDIEKTL 8 Unmodified _FLDIEKTL_ 0 0 0 REV__ENSG00000055208|ENST00000637181|TAB2 REV__ENSG00000055208|ENST00000637181|TAB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.258544921875 2 489.778951 977.543348 0.22683 0.0001111 0.26965 0.00013207 0.49648 0.00024316 489.7789373013585 148.41 0.60187 143.26 142.97 143.58 -5.1558 32 16 3 0 0 0 8448 1 28747 28747 13.615 0 1 3541100 + 14996 14114 9812 9815 15073 15073 0.053678223544807224 FLDLARNL 8 Unmodified _FLDLARNL_ 0 0 0 ENSG00000115902|ENST00000234256|SLC1A4 ENSG00000115902|ENST00000234256|SLC1A4 ENSG00000115902|ENST00000234256|SLC1A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2434387207031 2 481.276909 960.539266 0.26335 0.00012675 -0.049432 -2.3791E-05 0.21392 0.00010295 481.27685290893527 115.58 0.62927 111 110.63 111.26 -4.5815 31 17 2 0 0 0 8448 1 22184 22184 13.615 0 1 3847200 14997 2891 9813 9816 15074 15074 0.05741777651417124 FLDLARNL 8 Unmodified _FLDLARNL_ 0 0 0 ENSG00000115902|ENST00000234256|SLC1A4 ENSG00000115902|ENST00000234256|SLC1A4 ENSG00000115902|ENST00000234256|SLC1A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7783203125 2 481.276909 960.539266 0.45092 0.00021702 -0.21099 -0.00010155 0.23993 0.00011547 481.2767484468529 115.32 0.59947 111.01 110.66 111.26 -4.3135 38 16 3 0 0 0 8448 1 22207 22207 9.544 0 1 4145600 14998 2891 9813 9816 15075 15075 0.05741777651417124 FLDLSASVE 9 Unmodified _FLDLSASVE_ 0 0 0 ENSG00000120451|ENST00000265909|SNX19 ENSG00000120451|ENST00000265909|SNX19 ENSG00000120451|ENST00000265909|SNX19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25543212890625 2 490.75039 979.486227 0.11164 5.4788E-05 0.39665 0.00019466 0.5083 0.00024945 490.75044621685885 130.1 0.78307 125.46 125.08 125.86 -4.6359 46 21 3 0 0 0 0.54076 1 25620 25620 26.884 5.137 1 2360400 14999 3135 9814 9817 15076 15076 -0.004336449219067617 FLDLSYNQSL 10 Unmodified _FLDLSYNQSL_ 0 0 0 ENST00000296328.8_1_3:196083300-196083480:-|nuORF ENST00000296328.8_1_3:196083300-196083480:-|nuORF ENST00000296328.8_1_3:196083300-196083480:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2923583984375 2 600.300778 1198.587 0.50584 0.00030365 -0.30232 -0.00018148 0.20352 0.00012217 600.3005832618699 114.45 1.166 109.89 109.42 110.58 -4.555 117 32 5 0 0 0 0.70357 1 21914 21914 10.824 0.75 1 194790000 15000 8507 9815 9818 15077 15077 -0.004346129390569331 FLDNEFFY 8 Unmodified _FLDNEFFY_ 0 0 0 tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1 tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1 tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7904663085938 2 547.745108 1093.47566 NaN NaN NaN NaN NaN NaN NaN 95.606 1 91.415 90.915 91.915 -4.1911 0 0 0 0.21486 1 18246 18246 11.114 0 1 15001 26338 9816 9819 15078 15078 -0.06733627576318213 FLDPEKNV 8 Unmodified _FLDPEKNV_ 0 0 0 ENST00000431705.1_1_3:48885788-48886603:+|nuORF ENST00000431705.1_1_3:48885788-48886603:+|nuORF ENST00000431705.1_1_3:48885788-48886603:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2532653808594 2 481.2531 960.491647 0.054447 2.6203E-05 0.44289 0.00021314 0.49734 0.00023935 481.2532559292357 65.088 1.1882 62.041 61.522 62.71 -3.047 72 34 3 0 0 0 0.23681 1 12655 12655 41.84 7.4379 1 3888300 15002 9789 9817 9820 15079 15079 0.00982078660570096 FLDPEKNV 8 Unmodified _FLDPEKNV_ 0 0 0 ENST00000431705.1_1_3:48885788-48886603:+|nuORF ENST00000431705.1_1_3:48885788-48886603:+|nuORF ENST00000431705.1_1_3:48885788-48886603:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2529296875 2 481.2531 960.491647 0.26363 0.00012687 0.08121 3.9083E-05 0.34484 0.00016596 481.2530308662671 65.487 0.95293 62.029 61.538 62.491 -3.4581 56 26 3 0 0 0 0.44108 1 12328 12328 30.637 5.2372 1 3376200 15003 9789 9817 9820 15080 15080 0.00982078660570096 FLDPEKNV 8 Unmodified _FLDPEKNV_ 0 0 0 ENST00000431705.1_1_3:48885788-48886603:+|nuORF ENST00000431705.1_1_3:48885788-48886603:+|nuORF ENST00000431705.1_1_3:48885788-48886603:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25299072265625 2 481.2531 960.491647 0.23899 0.00011502 -0.011537 -5.5524E-06 0.22746 0.00010946 481.25311439314635 65.101 1.3335 61.818 61.317 62.65 -3.2832 66 38 2 0 0 0 0.27447 1 12310 12310 37.974 3.0419 1 3279000 15004 9789 9817 9820 15081 15081 0.00982078660570096 FLDRRPDY 8 Unmodified _FLDRRPDY_ 0 0 0 REV__F13A1|p.P290Hfs*72|1|0.45|ENSG00000124491|chr6:6224790-6224790|G/-|frameshift_variant REV__F13A1|p.P290Hfs*72|1|0.45|ENSG00000124491|chr6:6224790-6224790|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2767944335938 2 541.274898 1080.53524 0.37029 0.00020043 -0.7056 -0.00038193 -0.33531 -0.00018149 541.2747243908519 158.24 0.14049 153.45 153.33 153.47 -4.7952 5 3 2 0 0 0 0.74398 1 31467 31467 7.9102 0.62092 1 2085400 + 15005 23510 9818 9821 15082 15082 -0.0018031184229130304 FLDSRVTEV 9 Unmodified _FLDSRVTEV_ 0 0 0 SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant;nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;ENSG00000159263|ENST00000290399|SIM2 SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2620239257812 2 533.282389 1064.55022 -0.10276 -5.4801E-05 0.67824 0.00036169 0.57548 0.00030689 533.2826239749262 92.245 0.60049 92.245 91.876 92.477 0 27 16 2 0 0 0 0.17396 2 18011 18011;18043 40.725 7.28 1 1894600 15006 5199 9819 9822 15083;15084 15083 0.020531352350417365 FLDSRVTEV 9 Unmodified _FLDSRVTEV_ 0 0 0 SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant;nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;ENSG00000159263|ENST00000290399|SIM2 SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2828979492188 2 533.282389 1064.55022 0.12211 6.5119E-05 -0.015316 -8.1678E-06 0.10679 5.6951E-05 533.282347207007 96.196 0.53368 92.146 91.828 92.362 -4.0496 35 15 3 0 0 0 0.10724 1 18842 18842 53.317 13.078 1 2112600 15007 5199 9819 9822 15085 15085 0.020531352350417365 FLDSRVTEV 9 Unmodified _FLDSRVTEV_ 0 0 0 SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant;nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;ENSG00000159263|ENST00000290399|SIM2 SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2623291015625 2 533.282389 1064.55022 0.48881 0.00026068 0.20548 0.00010958 0.69429 0.00037025 533.2824471154511 96.395 0.53015 92.16 91.808 92.338 -4.2348 21 14 2 0 0 0 0.075017 2 18396 18372;18396 63.227 7.7248 1 1190100 15008 5199 9819 9822 15086;15087 15087 0.020531352350417365 FLDSRVTEV 9 Unmodified _FLDSRVTEV_ 0 0 0 SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant;nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;ENSG00000159263|ENST00000290399|SIM2 SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825927734375 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 95.968 1 92.087 91.587 92.587 -3.881 0 0 0 0.087233 1 18417 18417 40.725 7.28 1 15009 5199 9819 9822 15088 15088 0.020531352350417365 FLDSRVTEV 9 Unmodified _FLDSRVTEV_ 0 0 0 SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant;nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;ENSG00000159263|ENST00000290399|SIM2 SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant SIM2|p.L497*|1|0.5|ENSG00000159263|chr21:36745045-36745045|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2638549804688 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 96.098 1 92.217 91.717 92.717 -3.881 0 0 0 0.055839 1 18443 18443 49.527 7.5717 1 15010 5199 9819 9822 15089 15089 0.020531352350417365 FLECEPRSL 9 Unmodified _FLECEPRSL_ 0 0 0 ENST00000419007.5_1_3:50312738-50313422:+|nuORF;nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B ENST00000419007.5_1_3:50312738-50313422:+|nuORF ENST00000419007.5_1_3:50312738-50313422:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7698974609375 2 547.270967 1092.52738 0.26917 0.00014731 -0.90005 -0.00049257 -0.63089 -0.00034527 547.2705051498631 145.51 0.14127 140.84 140.75 140.89 -4.6694 5 3 2 0 0 0 0.57447 1 28846 28846 14.838 3.198 1 1477700 15011 1084 9820 9823 15090 15090 -0.015182071540948527 FLEDPGPLR 9 Unmodified _FLEDPGPLR_ 0 0 0 REV__nc|nan|Q8N6N3-3|C1orf52 REV__nc|nan|Q8N6N3-3|C1orf52 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27978515625 2 522.279649 1042.54475 0.5721 0.00029879 -0.33851 -0.0001768 0.23358 0.000122 522.2793804134463 103.16 0.68404 103.16 102.73 103.41 0 37 19 3 0 0 0 0.52414 1 20298 20298 18.135 1.0221 1 2121900 + 15012 17514 9821 9824 15091 15091 0.025174564432290936 FLEDPGPLR 9 Unmodified _FLEDPGPLR_ 0 0 0 REV__nc|nan|Q8N6N3-3|C1orf52 REV__nc|nan|Q8N6N3-3|C1orf52 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2796020507812 2 522.279649 1042.54475 -0.65796 -0.00034364 0.70625 0.00036886 0.048288 2.522E-05 522.2799642788542 107.4 0.90791 103.08 102.54 103.45 -4.32 43 25 2 0 0 0 0.52414 1 21219 21219 18.135 4.6271 1 3050500 + 15013 17514 9821 9824 15092 15092 0.025174564432290936 FLEDPGPLR 9 Unmodified _FLEDPGPLR_ 0 0 0 REV__nc|nan|Q8N6N3-3|C1orf52 REV__nc|nan|Q8N6N3-3|C1orf52 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2800903320312 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 108.29 1 103.88 103.38 104.38 -4.4121 0 0 0 0.21848 1 20778 20778 18.135 3.2967 1 + 15014 17514 9821 9824 15093 15093 0.025174564432290936 FLELFYVD 8 Unmodified _FLELFYVD_ 0 0 0 REV__ENST00000502503.1_1_5:93410379-93447342:-|nuORF REV__ENST00000502503.1_1_5:93410379-93447342:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2692260742188 2 523.265676 1044.5168 0.60982 0.0003191 2.2524 0.0011786 2.8622 0.0014977 523.2670052746508 23.357 0.98446 21.804 20.991 21.976 -1.5532 23 9 3 0 0 0 0.74398 1 3928 3928 7.9102 1.7044 1 5677300 + 15015 22439 9822 9825 15094 15094 -0.00367866536839756 FLELNAAK 8 Unmodified _FLELNAAK_ 0 0 0 NUP210L|p.E696A|1|0.23|ENSG00000143552|chr1:154095035-154095035|T/G|missense_variant NUP210L|p.E696A|1|0.23|ENSG00000143552|chr1:154095035-154095035|T/G|missense_variant NUP210L|p.E696A|1|0.23|ENSG00000143552|chr1:154095035-154095035|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7586975097656 2 453.258185 904.501818 -0.24871 -0.00011273 -1.212 -0.00054937 -1.4608 -0.0006621 453.25768178854196 24.886 0.33823 23.033 22.812 23.15 -1.8534 12 9 2 0 0 0 0.58432 1 4076 4076 23.148 1.4018 1 612850 15016 12718 9823 9826 15095 15095 0.04574686385797122 FLEMAAEYSSP 11 Unmodified _FLEMAAEYSSP_ 0 0 0 REV__ENSG00000149021|ENST00000278282|SCGB1A1 REV__ENSG00000149021|ENST00000278282|SCGB1A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7798461914062 2 622.778822 1243.54309 NaN NaN NaN NaN NaN NaN NaN 70.792 1 67.325 66.825 67.825 -3.467 0 0 0 0.23379 1 13410 13410 5.2969 0.066215 1 + 15017 16994 9824 9827 15096 15096 -0.06893965427707371 FLERGAPCPP 10 Unmodified _FLERGAPCPP_ 0 0 0 REV__nc|ENSG00000160691|P29353-7|SHC1 REV__nc|ENSG00000160691|P29353-7|SHC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7716674804688 2 543.773677 1085.5328 NaN NaN NaN NaN NaN NaN NaN 20.575 1 19.179 18.679 19.679 -1.3966 0 0 0 0.22588 1 3443 3443 6.2058 1.4498 1 + 15018 17429 9825 9828 15097 15097 -0.006544835716113084 FLESGVKTV 9 Unmodified _FLESGVKTV_ 0 0 0 ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92;nc|ENSG00000114656|Q9ULG3-2|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27606201171875 2 490.276575 978.538597 0.20087 9.8484E-05 -0.47429 -0.00023253 -0.27342 -0.00013405 490.2762698114041 73.157 0.77792 73.157 72.919 73.697 0 28 21 2 0 0 0 0.26842 3 14185 14185;14227;14249 33.445 6.5612 1 705950 15019 2804 9826 9829 15098;15099;15100 15098 0.04846938211721863 FLESGVKTV 9 Unmodified _FLESGVKTV_ 0 0 0 ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92;nc|ENSG00000114656|Q9ULG3-2|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2763366699219 2 490.276575 978.538597 0.085591 4.1963E-05 -0.22711 -0.00011134 -0.14151 -6.9381E-05 490.27640228985996 76.715 0.44836 73.3 73.039 73.487 -3.4151 21 12 2 0 0 0 0.13904 2 14957 14957;15004 45.74 15.103 1 2856800 15020 2804 9826 9829 15101;15102 15101 0.04846938211721863 FLESGVKTV 9 Unmodified _FLESGVKTV_ 0 0 0 ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92;nc|ENSG00000114656|Q9ULG3-2|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27630615234375 2 490.276575 978.538597 0.15038 7.3726E-05 -0.01525 -7.4765E-06 0.13513 6.625E-05 490.2765229653191 76.999 0.31398 73.232 73.087 73.401 -3.7664 14 8 2 0 0 0 0.10699 1 14585 14585 53.404 19.302 1 1435100 15021 2804 9826 9829 15103 15103 0.04846938211721863 FLESGVKTV 9 Unmodified _FLESGVKTV_ 0 0 0 ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92;nc|ENSG00000114656|Q9ULG3-2|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2766418457031 2 490.276575 978.538597 -0.10527 -5.1612E-05 1.0164 0.00049832 0.91113 0.0004467 490.27663251548023 76.843 0.50006 73.209 73.028 73.528 -3.6337 31 13 3 0 0 0 0.10699 1 14635 14635 53.404 17.277 1 2226400 15022 2804 9826 9829 15104 15104 0.04846938211721863 FLFEQWQP 8 Unmodified _FLFEQWQP_ 0 0 0 REV__ENST00000555370.5_1_14:76452603-76488683:+|nuORF REV__ENST00000555370.5_1_14:76452603-76488683:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7674560546875 2 547.768917 1093.52328 NaN NaN NaN NaN NaN NaN NaN 174.22 1 169.33 168.83 169.83 -4.8916 0 0 0 0.21486 1 34674 34674 5.7604 0.52976 1 + 15023 22958 9827 9830 15105 15105 -0.019739285854711852 FLFFFFFSLIR 11 Unmodified _FLFFFFFSLIR_ 0 0 0 REV__ENST00000380860.8_1_5:68399938-68400088:+|nuORF REV__ENST00000380860.8_1_5:68399938-68400088:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.386962890625 2 742.410466 1482.80638 NaN NaN NaN NaN NaN NaN NaN 169.23 1 164.44 163.94 164.94 -4.7898 0 0 0 0.22632 1 34269 34269 0.00056442 0 1 + 15024 21160 9828 9831 15106 15106 0.08428862810137616 FLFFLNGVS 9 Unmodified _FLFFLNGVS_ 0 0 0 ENST00000357066.7_1_19:2072329-2072617:-|nuORF ENST00000357066.7_1_19:2072329-2072617:-|nuORF ENST00000357066.7_1_19:2072329-2072617:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.28076171875 2 522.28166 1042.54877 NaN NaN NaN NaN NaN NaN NaN 99.684 1 99.684 99.184 100.18 0 0 0 0 0.23508 1 19548 19548 11.64 1.4569 1 15025 8976 9829 9832 15107 15107 0.029195459369248056 FLFFMYFRWNV 11 Unmodified _FLFFMYFRWNV_ 0 0 0 ENST00000510312.6_1_5:73199984-73200204:+|nuORF ENST00000510312.6_1_5:73199984-73200204:+|nuORF ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.388671875 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 174.13 1 169.25 168.75 169.75 -4.8845 0 0 0 0.22632 1 34592 34592 1.4551 1.4289 1 15026 10739 9830 9833 15108 15108 0.0022314441023354448 FLFGEVHKA 9 Unmodified _FLFGEVHKA_ 0 0 0 MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant;MCM10|p.N701Tfs*35|2|0.27|ENSG00000065328|chr10:13197741-13197741|A/-|frameshift_variant;ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10 MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6989135742188 2 524.284734 1046.55492 0.060486 3.1712E-05 1.2029 0.00063067 1.2634 0.00066238 524.2846932243123 88.868 1.1239 88.868 88.157 89.281 0 53 31 3 0 0 0 0.40905 1 17382 17382 21.537 4.4241 1 4486400 15027 1355 9831 9834 15109 15109 0.03350064168489553 FLFKRNFIQRY 11 Unmodified _FLFKRNFIQRY_ 0 0 0 REV__ENST00000490029.1_1_1:38032458-38033504:-|nuORF REV__ENST00000490029.1_1_1:38032458-38033504:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 511.3101501464844 3 511.289261 1530.84595 0.20347 0.00010403 -2.1338 -0.001091 -1.9303 -0.00098695 511.28782406323705 138.69 0.13969 133.84 133.72 133.86 -4.8492 5 3 2 0 0 0 0.89074 1 26709 26709 0.026206 0.025642 1 562900 + 15028 22301 9832 9835 15110 15110 0.10176382813551754 FLFLAAKF 8 Unmodified _FLFLAAKF_ 0 0 0 REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.548944203961612|0.3234029913481031|2.98|483.0|18|3|sense REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.548944203961612|0.3234029913481031|2.98|483.0|18|3|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73663330078125 2 478.783839 955.553125 NaN NaN NaN NaN NaN NaN NaN 117.37 1 117.37 116.87 117.87 0 0 0 0 0.22722 1 23119 23119 0.25148 0 1 + 15029 23751 9833 9836 15111 15111 0.0735705515050995 FLFNRSFI 8 Unmodified _FLFNRSFI_ 0 0 0 REV__ENST00000371728.7_1_10:91497332-91497380:+|nuORF REV__ENST00000371728.7_1_10:91497332-91497380:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2725219726562 2 522.287277 1042.56 NaN NaN NaN NaN NaN NaN NaN 128.46 1 128.46 127.96 128.96 0 0 0 0 0.22674 1 25370 25370 0.68139 0 1 + 15030 21012 9834 9837 15112 15112 0.04042368031082333 FLFNRSFI 8 Unmodified _FLFNRSFI_ 0 0 0 REV__ENST00000371728.7_1_10:91497332-91497380:+|nuORF REV__ENST00000371728.7_1_10:91497332-91497380:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2592163085938 2 522.287277 1042.56 NaN NaN NaN NaN NaN NaN NaN 123.22 1 118.63 118.13 119.13 -4.5926 0 0 0 0.21486 1 23721 23721 4.756 0.42677 1 + 15031 21012 9834 9837 15113 15113 0.04042368031082333 FLFNVVLK 8 Unmodified _FLFNVVLK_ 0 0 0 REV__ENST00000588356.1_1_19:2235749-2236304:-|nuORF REV__ENST00000588356.1_1_19:2235749-2236304:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26580810546875 2 490.302396 978.590239 NaN NaN NaN NaN NaN NaN NaN 92.561 1 92.561 92.061 93.061 0 0 0 0 0.23782 1 18099 18099 0.063987 0.034705 1 + 15032 14950 9835 9838 15114 15114 0.10008726696264603 FLGDKLSTV 9 Unmodified _FLGDKLSTV_ 0 0 0 REV__ENSG00000166866|ENST00000300119|MYO1A REV__ENSG00000166866|ENST00000300119|MYO1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27642822265625 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 113.46 1 113.46 112.96 113.96 0 0 0 0 0.1761 1 22309 22309 26.884 0 1 + 15033 17880 9836 9839 15115 15115 0.048469382116991255 FLGDKLSTV 9 Unmodified _FLGDKLSTV_ 0 0 0 REV__ENSG00000166866|ENST00000300119|MYO1A REV__ENSG00000166866|ENST00000300119|MYO1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2762756347656 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 117.72 1 113.22 112.72 113.72 -4.502 0 0 0 0.22251 1 23205 23205 16.942 1.0951 1 + 15034 17880 9836 9839 15116 15116 0.048469382116991255 FLGDKLSTV 9 Unmodified _FLGDKLSTV_ 0 0 0 REV__ENSG00000166866|ENST00000300119|MYO1A REV__ENSG00000166866|ENST00000300119|MYO1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2737121582031 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 117.89 1 113.28 112.78 113.78 -4.6106 0 0 0 0.20155 1 22624 22624 23.148 1.4018 1 + 15035 17880 9836 9839 15117 15117 0.048469382116991255 FLGEKIASV 9 Unmodified _FLGEKIASV_ 0 0 0 nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1 nc|ENSG00000151327|Q8N128|FAM177A1 nc|ENSG00000151327|Q8N128|FAM177A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7715759277344 2 482.279118 962.543683 0.59167 0.00028535 -0.30815 -0.00014862 0.28352 0.00013674 482.2788914788803 107.97 0.77006 103.84 103.49 104.26 -4.135 70 21 4 0 0 0 0.10829 1 20784 20784 76.825 32.433 1 12944000 15036 4859 9837 9840 15118 15118 0.06091242074330694 FLGNKVDSY 9 Unmodified _FLGNKVDSY_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2;HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant;HSPG2|p.C2696Sfs*49|1|0.18|ENSG00000142798|chr1:21847425-21847431|GCCCGGC/-|frameshift_variant;HSPG2|p.P3112Lfs*13|1|0.47|ENSG00000142798|chr1:21841279-21841279|G/-|frameshift_variant;HSPG2|p.P3071Hfs*100|1|0.06|ENSG00000142798|chr1:21841639-21841655|GATGATGGAGCCATTGG/-|frameshift_variant ENSG00000142798|ENST00000374695|HSPG2;HSPG2|p.P3071Hfs*100|1|0.06|ENSG00000142798|chr1:21841639-21841655|GATGATGGAGCCATTGG/-|frameshift_variant ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2661743164062 2 521.763832 1041.51311 -0.35212 -0.00018372 0.91525 0.00047755 0.56314 0.00029382 521.7642402678265 113.62 0.48281 109.17 109.01 109.49 -4.4538 20 13 2 0 0 0 0.28246 1 22372 22372 4.7159 0 1 1968900 15037 4444;11924 9838 9841 15119 15119 -0.00598536310712916 FLGRINEI 8 Unmodified _FLGRINEI_ 0 0 0 nc|ENSG00000162129|Q9H078-3|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;ENST00000538021.5_2_11:72004413-72018253:-|nuORF;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB nc|ENSG00000162129|Q9H078-3|CLPB nc|ENSG00000162129|Q9H078-3|CLPB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7698669433594 2 481.276909 960.539266 0.053569 2.5782E-05 0.26918 0.00012955 0.32275 0.00015533 481.27704957077964 115.42 0.6496 110.95 110.6 111.25 -4.4726 34 18 2 0 0 0 0.087478 2 22753 22753;22767 78.149 3.7266 1 3868200 15038 5315 9839 9842 15120;15121 15120 0.05741777651417124 FLGRKLFNV 9 Unmodified _FLGRKLFNV_ 0 0 0 REV__DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant REV__DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7803955078125 2 547.329476 1092.6444 0.46156 0.00025262 -1.347 -0.00073724 -0.88541 -0.00048461 547.3283952392908 153.77 0.34261 148.55 148.35 148.69 -5.2209 12 9 2 0 0 0 0.6215 1 29826 29826 0.12781 0 1 715890 + 15039 13660 9840 9843 15122 15122 0.10178318847852097 FLGRMDVDL 9 Unmodified _FLGRMDVDL_ 0 0 0 REV__ENST00000554644.1_1_14:93723510-93760888:-|nuORF REV__ENST00000554644.1_1_14:93723510-93760888:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2714233398438 2 533.273509 1064.53247 NaN NaN NaN NaN NaN NaN NaN 122.74 1 118.19 117.69 118.69 -4.5476 0 0 0 0.23508 1 24199 24199 12.532 0 1 + 15040 13218 9841 9844 15123 15123 0.00278096708530029 FLGSNDIPG 9 Unmodified _FLGSNDIPG_ 0 0 0 REV__ENSG00000114316|ENST00000265560|USP4 REV__ENSG00000114316|ENST00000265560|USP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2296447753906 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 138.69 1 133.74 133.24 134.24 -4.952 0 0 0 0.22251 1 26671 26671 16.942 2.104 1 + 15041 15368 9842 9845 15124 15124 -0.017787808905723068 FLGSSLVAW 9 Unmodified _FLGSSLVAW_ 0 0 0 CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2215Wfs*26|2|0.42|ENSG00000143126|chr1:109269115-109269115|C/-|frameshift_variant CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2679748535156 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 149.85 1 144.66 144.16 145.16 -5.1994 0 0 0 0.1124 1 29030 29030 36.044 1.9418 1 15042 480 9843 9846 15125 15125 0.027349729028628644 FLHGPHSI 8 Unmodified _FLHGPHSI_ 0 0 0 ENST00000482714.5_1_7:45109991-45110141:+|nuORF ENST00000482714.5_1_7:45109991-45110141:+|nuORF ENST00000482714.5_1_7:45109991-45110141:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75579833984375 2 454.24287 906.471186 NaN NaN NaN NaN NaN NaN NaN 132.62 1 127.82 127.32 128.32 -4.799 0 0 0 0.23749 1 25527 25527 0.12286 0 1 15043 10401 9844 9847 15126 15126 0.014209527914317732 FLHNGSYEDY 10 Unmodified _FLHNGSYEDY_ 0 0 0 ABCA12|p.R411H|1|0.6|ENSG00000144452|chr2:215025728-215025728|C/T|missense_variant ABCA12|p.R411H|1|0.6|ENSG00000144452|chr2:215025728-215025728|C/T|missense_variant ABCA12|p.R411H|1|0.6|ENSG00000144452|chr2:215025728-215025728|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.778076171875 2 622.76456 1243.51457 NaN NaN NaN NaN NaN NaN NaN 69.364 1 65.828 65.328 66.328 -3.5362 0 0 0 0.22588 1 13057 13057 4.3292 0.38484 1 15044 8 9845 9848 15127 15127 -0.09744947012609373 FLITNALRF 9 Unmodified _FLITNALRF_ 0 0 0 KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94;ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;KIAA0195|p.S895Pfs*13|5|0.32|ENSG00000177728|chr17:75494982-75494982|C/-|frameshift_variant KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7904663085938 2 547.821484 1093.62842 NaN NaN NaN NaN NaN NaN NaN 154.13 1 148.86 148.36 149.36 -5.2669 0 0 0 0.23508 1 29886 29886 7.9102 0 1 15045 6534 9846 9849 15128 15128 0.08534612610947079 FLIVPCVFR 9 Unmodified _FLIVPCVFR_ 0 0 0 REV__MTMR14|p.L397*|1|0.24|ENSG00000163719|chr3:9687841-9687841|T/-|frameshift_variant REV__MTMR14|p.L397*|1|0.24|ENSG00000163719|chr3:9687841-9687841|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7852172851562 2 547.31498 1092.61541 0.12327 6.7466E-05 -0.758 -0.00041486 -0.63473 -0.0003474 547.3131912542825 143.85 0.10612 138.78 138.69 138.8 -5.0671 4 2 2 0 0 0 0.64208 1 27719 27719 0.40827 0.40488 1 645360 + 15046 17606 9847 9850 15129 15129 0.072804582272056 FLKDQNELFR 10 Unmodified _FLKDQNELFR_ 0 0 0 REV__ZNF300|p.K379Nfs*18|1|0.37|ENSG00000145908|chr5:150896102-150896102|T/-|frameshift_variant REV__ZNF300|p.K379Nfs*18|1|0.37|ENSG00000145908|chr5:150896102-150896102|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.228515625 3 437.234822 1308.68264 NaN NaN NaN NaN NaN NaN NaN 61.633 1 61.633 61.133 62.133 0 0 0 0 2.8426 1 11820 11820 0.013265 0 1 + 15047 16860 9848 9851 15130 15130 0.04064159971835579 FLKEDSKL 8 Unmodified _FLKEDSKL_ 0 0 0 REV__DPP10|p.I660V|1|0.42|ENSG00000175497|chr2:115836184-115836184|A/G|missense_variant REV__DPP10|p.I660V|1|0.42|ENSG00000175497|chr2:115836184-115836184|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25665283203125 2 490.276575 978.538597 0.15038 7.3726E-05 -0.01525 -7.4765E-06 0.13513 6.625E-05 490.2765229653191 76.999 0.31398 73.232 73.087 73.401 -3.7664 14 8 2 0 0 0 0.60622 1 14562 14562 21.747 2.4897 1 1435100 + 15048 13745 9849 9852 15131 15131 0.04846938211710494 FLKKTHAIE 9 Unmodified _FLKKTHAIE_ 0 0 0 REV__ENSG00000134030|ENST00000256413|CTIF REV__ENSG00000134030|ENST00000256413|CTIF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7735595703125 2 543.818941 1085.62333 NaN NaN NaN NaN NaN NaN NaN 163.08 1 158.29 157.79 158.79 -4.7898 0 0 0 0.22962 1 32486 32486 14.838 0 1 + 15049 16189 9850 9853 15132 15132 0.08394308748324875 FLKQIVKIKSG 11 Unmodified _FLKQIVKIKSG_ 0 0 0 REV__ENST00000216039.9_1_22:39096188-39096242:-|nuORF REV__ENST00000216039.9_1_22:39096188-39096242:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.771728515625 2 630.905548 1259.79654 NaN NaN NaN NaN NaN NaN NaN 119.48 1 119.48 118.98 119.98 0 0 0 0 0.23634 1 23542 23542 3.2813 1.4371 1 + 15050 20005 9851 9854 15133 15133 0.17703674804738512 FLKRYVKK 8 Unmodified _FLKRYVKK_ 0 0 0 REV__tr|U7T3I8|U7T3I8_FUSNUTranscriptiontermination/antiterminationproteinNusGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusGPE=3SV=1 REV__tr|U7T3I8|U7T3I8_FUSNUTranscriptiontermination/antiterminationproteinNusGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusGPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.275634765625 2 541.347669 1080.68079 NaN NaN NaN NaN NaN NaN NaN 128.67 1 128.67 128.17 129.17 0 0 0 0 0.2396 1 25413 25413 0 0 1 + 15051 25360 9852 9855 15134 15134 0.1436719574453491 FLKVHSQDL 9 Unmodified _FLKVHSQDL_ 0 0 0 RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant;ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2;RIN2|p.P357Hfs*39|1|0.48|ENSG00000132669|chr20:19974942-19974942|C/-|frameshift_variant;RIN2|p.I627Sfs*4|2|0.25|ENSG00000132669|chr20:19975750-19975750|C/-|frameshift_variant;RIN2|p.I627Hfs*7|1|0.47|ENSG00000132669|chr20:19975749-19975750|-/C|frameshift_variant RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7725219726562 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 114.15 1 114.15 113.65 114.65 0 0 0 0 0.23411 1 22452 22452 13.508 1.8676 1 15052 3752 9853 9856 15135 15135 0.04757431851612637 FLKWMHAPLWH 11 Unmodified _FLKWMHAPLWH_ 0 0 0 REV__ENST00000523063.5_1_8:33653913-33865452:+|nuORF REV__ENST00000523063.5_1_8:33653913-33865452:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2767333984375 3 489.256904 1464.74888 -0.51566 -0.00025229 -0.17875 -8.7455E-05 -0.69441 -0.00033974 489.2567803413507 15.058 0.27948 13.944 13.816 14.096 -1.1142 18 7 4 0 0 0 0.82353 1 2286 2286 0.50596 0 1 1394900 + 15053 22663 9854 9857 15136 15136 0.03509697332901851 FLKYILAHF 9 Unmodified _FLKYILAHF_ 0 0 0 ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C;RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant ENSG00000275793|ENST00000619918|RIMBP3 ENSG00000275793|ENST00000619918|RIMBP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3316650390625 2 576.334227 1150.6539 NaN NaN NaN NaN NaN NaN NaN 138.57 1 138.57 138.07 139.07 0 0 0 0 0.19652 1 27517 27517 0.40827 0.335 1 15054 6836 9855 9858 15137 15137 0.08460087133357774 FLLDNARI 8 Unmodified _FLLDNARI_ 0 0 0 nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF;ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant;nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7786865234375 2 481.276909 960.539266 0.010234 4.9255E-06 0.14557 7.0061E-05 0.15581 7.4987E-05 481.2769394140775 111.25 0.65858 111.25 110.86 111.52 0 41 18 3 0 0 0 0.17453 1 21886 21886 48.346 6.2513 1 4267600 15055 248 9856 9859 15138 15138 0.05741777651417124 FLLDNARI 8 Unmodified _FLLDNARI_ 0 0 0 nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF;ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant;nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7783203125 2 481.276909 960.539266 0.053569 2.5782E-05 0.26918 0.00012955 0.32275 0.00015533 481.27704957077964 115.42 0.6496 110.95 110.6 111.25 -4.4726 34 18 2 0 0 0 0.12867 1 22717 22717 57.471 2.6978 1 3868200 15056 248 9856 9859 15139 15139 0.05741777651417124 FLLDNARI 8 Unmodified _FLLDNARI_ 0 0 0 nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF;ATG16L1|p.I471Cfs*34|1|0.04|ENSG00000085978|chr2:233290333-233290334|-/TGCAAAC|frameshift_variant;nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25018310546875 2 481.276909 960.539266 0.45092 0.00021702 -0.21099 -0.00010155 0.23993 0.00011547 481.2767484468529 115.32 0.59947 111.01 110.66 111.26 -4.3135 38 16 3 0 0 0 0.078324 1 22181 22181 67.344 3.1075 1 4145600 15057 248 9856 9859 15140 15140 0.05741777651417124 FLLEIRQTLQ 10 Unmodified _FLLEIRQTLQ_ 0 0 0 SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant;SNX13|p.F911Wfs*5|1|0.02|ENSG00000071189|chr7:17794184-17794187|AAGA/-|frameshift_variant;SNX13|p.E913Qfs*13|1|0.04|ENSG00000071189|chr7:17794182-17794183|-/TTTG|frameshift_variant;ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13;ENST00000492626.5_1_7:17929984-17937021:-|nuORF;ENST00000482558.5_1_7:17908017-17937021:-|nuORF;SNX13|p.T598Pfs*13|1|0.23|ENSG00000071189|chr7:17821562-17821562|T/-|frameshift_variant;SNX13|p.T630Dfs*3|1|0.13|ENSG00000071189|chr7:17816248-17816249|-/T|frameshift_variant;SNX13|p.K644Rfs*3|1|0.23|ENSG00000071189|chr7:17816204-17816204|T/-|frameshift_variant;SNX13|p.F741Lfs*6|1|0.38|ENSG00000071189|chr7:17803422-17803422|A/-|frameshift_variant SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.763916015625 2 630.869163 1259.72377 NaN NaN NaN NaN NaN NaN NaN 54.59 1 54.59 54.09 55.09 0 0 0 0 0.22588 1 10411 10411 3.5965 0.31518 1 15058 1447 9857 9860 15141 15141 0.10429921011336774 FLLGDRFL 8 Unmodified _FLLGDRFL_ 0 0 0 OR2AT4|p.Q200Rfs*37|1|0.2|ENSG00000171561|chr11:75089116-75089116|G/-|frameshift_variant;ENSG00000171561|ENST00000641541|OR2AT4;OR2AT4|p.I309Lfs*14|1|0.05|ENSG00000171561|chr11:75088789-75088790|-/AATGAAATAATGTTAA|frameshift_variant OR2AT4|p.Q200Rfs*37|1|0.2|ENSG00000171561|chr11:75089116-75089116|G/-|frameshift_variant OR2AT4|p.Q200Rfs*37|1|0.2|ENSG00000171561|chr11:75089116-75089116|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.7822570800781 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 148.02 1 143.31 142.81 143.81 -4.7095 0 0 0 0.21486 1 29387 29387 10.183 0.83596 1 15059 6153 9858 9861 15142 15142 0.05850965656816243 FLLHERHQ 8 Unmodified _FLLHERHQ_ 0 0 0 REV__ENST00000264852.8_2_3:113251777-113285301:+|nuORF REV__ENST00000264852.8_2_3:113251777-113285301:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2134094238281 3 360.52968 1078.56721 0.057628 2.0776E-05 -0.022186 -7.9987E-06 0.035442 1.2778E-05 360.5295699343186 53.723 0.52662 50.635 50.356 50.883 -3.0876 34 14 3 0 0 0 1.0243 1 9903 9903 7.2892 0 1 2326500 + 15060 20233 9859 9862 15143 15143 0.03107100631495996 FLLLFIIVHIR 11 Unmodified _FLLLFIIVHIR_ 0 0 0 ENST00000438356.1_1_7:155539139-155539223:+|nuORF ENST00000438356.1_1_7:155539139-155539223:+|nuORF ENST00000438356.1_1_7:155539139-155539223:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5366516113281 3 461.967348 1382.88021 NaN NaN NaN NaN NaN NaN NaN 154.19 1 148.97 148.47 149.47 -5.2209 0 0 0 0.22632 1 29891 29891 0.50596 0.46217 1 15061 9861 9860 9863 15144 15144 0.20408830972451142 FLLLFTIWV 9 Unmodified _FLLLFTIWV_ 0 0 0 AMY2B|p.G11Wfs*23|1|0.31|ENSG00000240038|chr1:103571630-103571631|-/T|frameshift_variant AMY2B|p.G11Wfs*23|1|0.31|ENSG00000240038|chr1:103571630-103571631|-/T|frameshift_variant AMY2B|p.G11Wfs*23|1|0.31|ENSG00000240038|chr1:103571630-103571631|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3328857421875 2 576.346803 1150.67905 NaN NaN NaN NaN NaN NaN NaN 156.88 1 151.61 151.11 152.11 -5.2712 0 0 0 0.19657 1 30433 30433 4.897 4.6316 1 15062 154 9861 9864 15145 15145 0.10974141935935222 FLLLFTIWV 9 Unmodified _FLLLFTIWV_ 0 0 0 AMY2B|p.G11Wfs*23|1|0.31|ENSG00000240038|chr1:103571630-103571631|-/T|frameshift_variant AMY2B|p.G11Wfs*23|1|0.31|ENSG00000240038|chr1:103571630-103571631|-/T|frameshift_variant AMY2B|p.G11Wfs*23|1|0.31|ENSG00000240038|chr1:103571630-103571631|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3241577148438 2 576.346803 1150.67905 NaN NaN NaN NaN NaN NaN NaN 156.98 1 151.71 151.21 152.21 -5.2712 0 0 0 0.19657 1 30453 30453 4.897 4.6316 1 15063 154 9861 9864 15146 15146 0.10974141935935222 FLLLLLVPGP 10 Unmodified _FLLLLLVPGP_ 0 0 0 REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2666625976562 2 541.354628 1080.6947 NaN NaN NaN NaN NaN NaN NaN 37.535 1 37.535 37.035 38.035 0 0 0 0 0.22588 1 6941 6941 1.8442 0.19162 1 + 15064 17754 9862 9865 15147 15147 0.15758428453000306 FLLLLLWVILC 11 Unmodified _FLLLLLWVILC_ 0 0 0 nc|ENSG00000168913|Q6UWT2-2|ENHO;ENSG00000168913|ENST00000399775|ENHO nc|ENSG00000168913|Q6UWT2-2|ENHO nc|ENSG00000168913|Q6UWT2-2|ENHO MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.74200439453125 3 449.282056 1344.82434 0.039084 1.756E-05 0.11815 5.3084E-05 0.15724 7.0643E-05 449.282686188408 141.44 0.17961 136.45 136.38 136.56 -4.9877 6 4 2 0 0 0 0.66087 1 27255 27255 0.00056442 0 1 680470 15065 5949 9863 9866 15148 15148 0.1657186174063554 FLLQKRRNQRF 11 Unmodified _FLLQKRRNQRF_ 0 0 0 ENST00000342992.10_3_2:179510673-179515519:-|nuORF ENST00000342992.10_3_2:179510673-179515519:-|nuORF ENST00000342992.10_3_2:179510673-179515519:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 502.36236572265625 3 502.631909 1504.8739 0.35111 0.00017648 3.8391 0.0019296 4.1902 0.0021061 502.9675869663248 163.96 0.1405 158.89 158.79 158.93 -5.0648 5 3 2 0 0 0 0.96192 1 31919 31919 1.3296 0.55311 1 3103900 15066 8870 9864 9867 15149 15149 0.14165705793629968 FLLRRFHY 8 Unmodified _FLLRRFHY_ 0 0 0 ENSG00000196778|ENST00000641528|OR52K1 ENSG00000196778|ENST00000641528|OR52K1 ENSG00000196778|ENST00000641528|OR52K1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3198852539062 2 576.327268 1150.63998 NaN NaN NaN NaN NaN NaN NaN 146.11 1 146.11 145.61 146.61 0 0 0 0 0.2343 1 29209 29209 0.62683 0.21856 1 15067 7307 9865 9868 15150 15150 0.07068854424937854 FLLRRFHY 8 Unmodified _FLLRRFHY_ 0 0 0 ENSG00000196778|ENST00000641528|OR52K1 ENSG00000196778|ENST00000641528|OR52K1 ENSG00000196778|ENST00000641528|OR52K1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3192138671875 2 576.327268 1150.63998 NaN NaN NaN NaN NaN NaN NaN 130.42 1 125.59 125.09 126.09 -4.8355 0 0 0 0.23749 1 25043 25043 0.62683 0.62345 1 15068 7307 9865 9868 15151 15151 0.07068854424937854 FLLTLPFWAY 10 Unmodified _FLLTLPFWAY_ 0 0 0 ENSG00000126353|ENST00000246657|CCR7 ENSG00000126353|ENST00000246657|CCR7 ENSG00000126353|ENST00000246657|CCR7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 424.510498046875 3 424.23387 1269.67978 NaN NaN NaN NaN NaN NaN NaN 105.86 1 101.49 100.99 101.99 -4.3764 0 0 0 2.8426 1 20298 20298 1.9275 0.47239 1 15069 3425 9866 9869 15152 15152 0.05572936585008392 FLLYLAPFLF 10 Unmodified _FLLYLAPFLF_ 0 0 0 REV__ENST00000515144.5_1_5:14488550-14489156:+|nuORF REV__ENST00000515144.5_1_5:14488550-14489156:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7733154296875 2 622.359911 1242.70527 0.61404 0.00038215 1.5797 0.00098313 2.1937 0.0013653 622.8622380571812 69.868 0.41474 66.288 66.176 66.591 -3.5798 22 11 3 0 0 0 0.8428 1 13151 13151 12.532 0 1 2136600 + 15070 22583 9867 9870 15153 15153 0.09362411107417756 FLMKNSDLYGA 11 Unmodified _FLMKNSDLYGA_ 0 0 0 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.74853515625 2 629.810456 1257.60636 0.65681 0.00041367 -0.41483 -0.00026126 0.24198 0.0001524 629.8099279275965 105.74 0.73457 105.74 105.39 106.12 0 44 20 3 0 0 0 0.5544 2 20776 20776;20808 20.415 7.883 1 3396000 15071 6131 9868 9871 15154;15155 15154 -0.012139799197711909 FLMKNSDLYGA 11 Unmodified _FLMKNSDLYGA_ 0 0 0 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.77685546875 2 629.810456 1257.60636 0.5741 0.00036158 -1.1561 -0.00072813 -0.582 -0.00036655 629.8098325391985 110.26 0.72835 105.89 105.55 106.28 -4.3776 43 20 3 0 0 0 0.43921 1 21750 21750 26.268 3.5319 1 3662900 15072 6131 9868 9871 15156 15156 -0.012139799197711909 FLMKNSDLYGA 11 Unmodified _FLMKNSDLYGA_ 0 0 0 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7508544921875 2 629.810456 1257.60636 0.058209 3.6661E-05 -0.47513 -0.00029924 -0.41692 -0.00026258 629.8102591291353 110.33 0.66286 105.84 105.51 106.18 -4.4915 42 18 3 0 0 0 0.43318 1 21182 21182 29.082 16.039 1 4337100 15073 6131 9868 9871 15157 15157 -0.012139799197711909 FLMKNSDLYGA 11 Unmodified _FLMKNSDLYGA_ 0 0 0 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7738647460938 2 629.810456 1257.60636 0.87874 0.00055344 -1.1107 -0.00069954 -0.23197 -0.0001461 629.8097750413203 110.05 0.73291 105.86 105.47 106.2 -4.1826 44 20 3 0 0 0 0.43921 2 21186 21186;21193 26.268 8.1218 1 3829600 15074 6131 9868 9871 15158;15159 15158 -0.012139799197711909 FLNCLFCP 8 Unmodified _FLNCLFCP_ 0 0 0 REV__ENST00000380050.7_1_7:90836599-90836752:+|nuORF REV__ENST00000380050.7_1_7:90836599-90836752:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72149658203125 2 478.722067 955.429581 NaN NaN NaN NaN NaN NaN NaN 159.77 1 154.54 154.04 155.04 -5.2299 0 0 0 0.21181 1 31014 31014 15.768 4.6538 1 + 15075 21150 9869 9872 15160 15160 -0.04991687283779811 FLNFVAFSV 9 Unmodified _FLNFVAFSV_ 0 0 0 REV__ENST00000373504.10_1_X:72900888-72901020:+|nuORF REV__ENST00000373504.10_1_X:72900888-72901020:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.28173828125 2 522.28166 1042.54877 NaN NaN NaN NaN NaN NaN NaN 104.04 1 99.818 99.318 100.32 -4.2183 0 0 0 0.22621 1 20459 20459 15.847 0.078963 1 + 15076 21043 9870 9873 15161 15161 0.029195459369248056 FLNKLLNV 8 Unmodified _FLNKLLNV_ 0 0 0 REV__ENST00000016171.5_1_10:101474196-101474316:-|nuORF REV__ENST00000016171.5_1_10:101474196-101474316:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.254638671875 2 480.797478 959.580402 0.18532 8.9103E-05 -0.04937 -2.3737E-05 0.13595 6.5366E-05 480.79739998063934 156.42 0.88069 151.63 151.22 152.1 -4.7885 73 24 4 0 0 0 0.2118 1 31063 31063 44.407 6.2558 1 19046000 + 15077 19971 9871 9874 15162 15162 0.09899538690888221 FLNNLEVNM 9 Unmodified _FLNNLEVNM_ 0 0 0 ENST00000433510.2_1_17:46713503-46713704:-|nuORF ENST00000433510.2_1_17:46713503-46713704:-|nuORF ENST00000433510.2_1_17:46713503-46713704:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7734375 2 547.270967 1092.52738 0.34613 0.00018942 0.41837 0.00022896 0.7645 0.00041839 547.271073365535 156.75 0.8907 151.96 151.56 152.45 -4.7885 37 24 3 0 0 0 0.023387 3 31183 31141;31183;31203 88.904 42.883 1 2430000 15078 9812 9872 9875 15163;15164;15165 15164 -0.015182071540948527 FLNNLEVNM 9 Unmodified _FLNNLEVNM_ 0 0 0 ENST00000433510.2_1_17:46713503-46713704:-|nuORF ENST00000433510.2_1_17:46713503-46713704:-|nuORF ENST00000433510.2_1_17:46713503-46713704:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7833251953125 2 547.270967 1092.52738 0.19304 0.00010564 0.37764 0.00020667 0.57068 0.00031232 547.2712415229541 157.43 0.66519 152.15 151.8 152.47 -5.2854 28 18 2 0 0 0 0.042631 3 30551 30501;30551;30560 74.423 45.341 1 2474800 15079 9812 9872 9875 15166;15167;15168 15167 -0.015182071540948527 FLNNLEVNM 9 Unmodified _FLNNLEVNM_ 0 0 0 ENST00000433510.2_1_17:46713503-46713704:-|nuORF ENST00000433510.2_1_17:46713503-46713704:-|nuORF ENST00000433510.2_1_17:46713503-46713704:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7728881835938 2 547.270967 1092.52738 0.49389 0.00027029 -0.17164 -9.3932E-05 0.32225 0.00017636 547.2710038415543 157.37 0.56573 152.1 151.76 152.33 -5.2712 26 15 3 0 0 0 0.25702 1 30525 30525 34.102 14.845 1 2879000 15080 9812 9872 9875 15169 15169 -0.015182071540948527 FLNNNVKI 8 Unmodified _FLNNNVKI_ 0 0 0 REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1 REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7790832519531 2 481.276909 960.539266 0.26335 0.00012675 -0.049432 -2.3791E-05 0.21392 0.00010295 481.27685290893527 115.58 0.62927 111 110.63 111.26 -4.5815 31 17 2 0 0 0 8448 2 22151 22151;22197 9.544 0 1 3847200 + 15081 25162 9873 9876 15170;15171 15170 0.05741777651417124 FLNSEIHQV 9 Unmodified _FLNSEIHQV_ 0 0 0 nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2 nc|ENSG00000095383|Q9BYX2-3|TBC1D2 nc|ENSG00000095383|Q9BYX2-3|TBC1D2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7827758789062 2 543.782556 1085.55056 0.33021 0.00017956 -0.23398 -0.00012723 0.096232 5.2329E-05 543.7823041912576 85.759 0.57722 85.759 85.394 85.971 0 24 15 2 0 0 0 0.072372 3 16734 16687;16734;16758 63.961 14.028 1 2902800 15082 1858 9874 9877 15172;15173;15174 15173 0.011205549548776617 FLNSEIHQV 9 Unmodified _FLNSEIHQV_ 0 0 0 nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2 nc|ENSG00000095383|Q9BYX2-3|TBC1D2 nc|ENSG00000095383|Q9BYX2-3|TBC1D2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7822875976562 2 543.782556 1085.55056 0.40014 0.00021759 -0.067619 -3.677E-05 0.33252 0.00018082 543.7824565743601 89.749 0.64142 85.705 85.346 85.987 -4.0443 25 17 2 0 0 0 0.10083 3 17073 17057;17071;17073 55.503 14.082 1 1826600 15083 1858 9874 9877 15175;15176;15177 15177 0.011205549548776617 FLNSEIHQV 9 Unmodified _FLNSEIHQV_ 0 0 0 nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2 nc|ENSG00000095383|Q9BYX2-3|TBC1D2 nc|ENSG00000095383|Q9BYX2-3|TBC1D2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7826538085938 2 543.782556 1085.55056 0.27971 0.0001521 -0.05544 -3.0147E-05 0.22427 0.00012196 543.7823818997401 89.349 0.56057 85.571 85.347 85.908 -3.7779 27 15 2 0 0 0 0.15889 2 17133 17133;17134 40.239 29.012 1 2410500 15084 1858 9874 9877 15178;15179 15178 0.011205549548776617 FLNSEIHQV 9 Unmodified _FLNSEIHQV_ 0 0 0 nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2 nc|ENSG00000095383|Q9BYX2-3|TBC1D2 nc|ENSG00000095383|Q9BYX2-3|TBC1D2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.782556 1085.55056 0.13947 7.5844E-05 0.14907 8.1061E-05 0.28854 0.00015691 543.782575676134 89.458 0.52493 85.598 85.338 85.863 -3.8595 -0.060263 0.00023962 NaN 63.961 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2905200 15085 1858 9874 9877 0.011205549548776617 FLNYKLIDGP 10 Unmodified _FLNYKLIDGP_ 0 0 0 ENST00000443233.5_1_7:107204485-107205092:+|nuORF ENST00000443233.5_1_7:107204485-107205092:+|nuORF ENST00000443233.5_1_7:107204485-107205092:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2564697265625 2 590.324057 1178.63356 NaN NaN NaN NaN NaN NaN NaN 117.78 1 113.37 112.87 113.87 -4.4088 0 0 0 0.22323 1 22665 22665 24.021 2.4304 1 15086 9911 9875 9878 15180 15180 0.05138871682879653 FLPDGGKEV 9 Unmodified _FLPDGGKEV_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;ENST00000512124.6_1_5:31467712-31485015:-|nuORF nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76995849609375 2 481.2531 960.491647 0.23899 0.00011502 -0.011537 -5.5524E-06 0.22746 0.00010946 481.25311439314635 65.101 1.3335 61.818 61.317 62.65 -3.2832 66 38 2 0 0 0 0.41444 1 12332 12332 24.882 0.86099 1 3279000 15087 2738 9876 9879 15181 15181 0.009820786605814646 FLPESVAVV 9 Unmodified _FLPESVAVV_ 0 0 0 SLC9A8|p.S95del|1|0.26|ENSG00000197818|chr20:49823134-49823136|TTC/-|inframe_deletion;SLC9A8|p.P341Qfs*46|1|0.09|ENSG00000197818|chr20:49874765-49874765|C/-|frameshift_variant;ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8 SLC9A8|p.S95del|1|0.26|ENSG00000197818|chr20:49823134-49823136|TTC/-|inframe_deletion SLC9A8|p.S95del|1|0.26|ENSG00000197818|chr20:49823134-49823136|TTC/-|inframe_deletion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25103759765625 2 480.773668 959.532783 0.32597 0.00015672 -0.069853 -3.3583E-05 0.25612 0.00012314 480.773534432659 153.09 1.0567 147.87 147.36 148.42 -5.2209 38 29 2 0 0 0 0.55758 1 29620 29620 32.117 8.9685 1 1414700 15088 7402 9877 9880 15182 15182 0.05139839700041193 FLPKVTNCQFL 11 Unmodified _FLPKVTNCQFL_ 0 0 0 nc|ENSG00000198780|Q9Y6X4-2|FAM169A nc|ENSG00000198780|Q9Y6X4-2|FAM169A nc|ENSG00000198780|Q9Y6X4-2|FAM169A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2283935546875 3 437.237286 1308.69003 NaN NaN NaN NaN NaN NaN NaN 65.31 1 62.027 61.527 62.527 -3.2832 0 0 0 0.22632 1 12276 12276 0.026206 0.024825 1 15089 12552 9878 9881 15183 15183 0.048031762479013196 FLPPFFLRS 9 Unmodified _FLPPFFLRS_ 0 0 0 REV__nc|ENSG00000105639|P52333-4|JAK3 REV__nc|ENSG00000105639|P52333-4|JAK3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2162780761719 3 375.21481 1122.6226 NaN NaN NaN NaN NaN NaN NaN 150.91 1 150.91 150.41 151.41 0 0 0 0 0.19677 1 30219 30219 0.40827 0 1 + 15090 22696 9879 9882 15184 15184 0.06619514099247681 FLPPFFLRS 9 Unmodified _FLPPFFLRS_ 0 0 0 REV__nc|ENSG00000105639|P52333-4|JAK3 REV__nc|ENSG00000105639|P52333-4|JAK3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2162780761719 3 375.21481 1122.6226 NaN NaN NaN NaN NaN NaN NaN 150.92 1 150.92 150.42 151.42 0 0 0 0 0.23508 1 30221 30221 4.1895 1.691 1 + 15091 22696 9879 9882 15185 15185 0.06619514099247681 FLPPLSIFVF 10 Unmodified _FLPPLSIFVF_ 0 0 0 REV__ENST00000483821.1_1_6:33162461-33163032:-|nuORF REV__ENST00000483821.1_1_6:33162461-33163032:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2765502929688 2 590.344261 1178.67397 NaN NaN NaN NaN NaN NaN NaN 118 1 113.5 113 114 -4.502 0 0 0 0.22588 1 23262 23262 7.9102 2.6795 1 + 15092 22204 9880 9883 15186 15186 0.0917783807331034 FLPRTITL 8 Unmodified _FLPRTITL_ 0 0 0 PDZD11|p.Q42L|1|0.21|ENSG00000120509|chrX:70288476-70288476|T/A|missense_variant;ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11 PDZD11|p.Q42L|1|0.21|ENSG00000120509|chrX:70288476-70288476|T/A|missense_variant PDZD11|p.Q42L|1|0.21|ENSG00000120509|chrX:70288476-70288476|T/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2544860839844 2 480.797478 959.580402 0.011171 5.3709E-06 -0.13694 -6.5841E-05 -0.12577 -6.047E-05 480.79734725729026 35.844 0.55046 35.844 35.52 36.07 0 28 15 2 0 0 0 0.81042 1 6617 6617 23.148 0 1 3975500 15093 3138 9881 9884 15187 15187 0.09899538690888221 FLPRTITL 8 Unmodified _FLPRTITL_ 0 0 0 PDZD11|p.Q42L|1|0.21|ENSG00000120509|chrX:70288476-70288476|T/A|missense_variant;ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11 PDZD11|p.Q42L|1|0.21|ENSG00000120509|chrX:70288476-70288476|T/A|missense_variant PDZD11|p.Q42L|1|0.21|ENSG00000120509|chrX:70288476-70288476|T/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2327880859375 2 480.797478 959.580402 -0.30174 -0.00014508 0.34697 0.00016682 0.045228 2.1746E-05 480.7975850441729 38.32 0.45413 35.852 35.676 36.13 -2.4688 18 12 2 0 0 0 0.81042 1 7143 7143 16.942 3.4344 1 2456100 15094 3138 9881 9884 15188 15188 0.09899538690888221 FLPRTITL 8 Unmodified _FLPRTITL_ 0 0 0 PDZD11|p.Q42L|1|0.21|ENSG00000120509|chrX:70288476-70288476|T/A|missense_variant;ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11 PDZD11|p.Q42L|1|0.21|ENSG00000120509|chrX:70288476-70288476|T/A|missense_variant PDZD11|p.Q42L|1|0.21|ENSG00000120509|chrX:70288476-70288476|T/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2330627441406 2 480.797478 959.580402 0.083703 4.0244E-05 0.42823 0.00020589 0.51193 0.00024613 480.7974910615173 38.298 0.45717 35.856 35.668 36.125 -2.4419 26 12 3 0 0 0 0.81042 1 6792 6792 16.942 0 1 2013200 15095 3138 9881 9884 15189 15189 0.09899538690888221 FLPRTITL 8 Unmodified _FLPRTITL_ 0 0 0 PDZD11|p.Q42L|1|0.21|ENSG00000120509|chrX:70288476-70288476|T/A|missense_variant;ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11 PDZD11|p.Q42L|1|0.21|ENSG00000120509|chrX:70288476-70288476|T/A|missense_variant PDZD11|p.Q42L|1|0.21|ENSG00000120509|chrX:70288476-70288476|T/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2546081542969 2 480.797478 959.580402 0.13988 6.7256E-05 -0.016404 -7.8869E-06 0.12348 5.9369E-05 480.79742980662246 38.212 0.4894 35.807 35.569 36.058 -2.4049 23 13 2 0 0 0 0.81042 1 6796 6796 23.148 0 1 1818900 15096 3138 9881 9884 15190 15190 0.09899538690888221 FLPSLRGAW 9 Unmodified _FLPSLRGAW_ 0 0 0 REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1 REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6994018554688 2 523.792727 1045.5709 -0.04264 -2.2334E-05 3.8798 0.0020322 3.8372 0.0020099 524.296560005942 153.43 0.21036 148.66 148.48 148.69 -4.7684 6 5 2 0 0 0 0.81703 1 30464 30464 14.838 10.509 1 1203000 + 15097 25110 9882 9885 15191 15191 0.049937704053718335 FLPSYIIDV 9 Unmodified _FLPSYIIDV_ 0 0 0 CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;ENST00000532560.5_1_8:145625727-145626379:-|nuORF CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2664794921875 2 533.794601 1065.57465 0.34731 0.00018539 -0.2475 -0.00013212 0.099809 5.3277E-05 533.794549931612 172.55 0.21581 167.76 167.68 167.89 -4.7898 7 5 2 0 0 0 0.79204 1 35182 35182 16.942 0 1 7693000 15098 717 9883 9886 15192 15192 0.044483953885674055 FLQAHWFTCEL 11 Unmodified _FLQAHWFTCEL_ 0 0 0 ENSG00000132801|ENST00000255152|ZSWIM3 ENSG00000132801|ENST00000255152|ZSWIM3 ENSG00000132801|ENST00000255152|ZSWIM3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2431945800781 3 465.556907 1393.64889 NaN NaN NaN NaN NaN NaN NaN 155.79 1 155.79 155.29 156.29 0 0 0 0 0.22632 1 31237 31237 0.172 0.14059 1 15099 3764 9884 9887 15193 15193 -0.032185847915570776 FLQEGDLISA 10 Unmodified _FLQEGDLISA_ 0 0 0 nc|ENSG00000130713|Q13868-3|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7857666015625 2 546.782222 1091.54989 0.32993 0.0001804 -0.087391 -4.7784E-05 0.24254 0.00013262 546.7820838921843 133.38 0.8642 133.38 133 133.87 0 66 24 4 0 0 0 0.34654 1 26367 26367 34.402 5.3201 1 20841000 15100 3628 9885 9888 15194 15194 0.007777155151870829 FLQEGDLISA 10 Unmodified _FLQEGDLISA_ 0 0 0 nc|ENSG00000130713|Q13868-3|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7666015625 2 546.782222 1091.54989 0.22266 0.00012175 0.0069949 3.8247E-06 0.22966 0.00012557 546.7821151206189 138.26 0.86261 133.62 133.19 134.05 -4.6413 61 24 3 0 0 0 0.5575 1 27345 27345 21.537 8.4945 1 21280000 15101 3628 9885 9888 15195 15195 0.007777155151870829 FLQEGDLISA 10 Unmodified _FLQEGDLISA_ 0 0 0 nc|ENSG00000130713|Q13868-3|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7669677734375 2 546.782222 1091.54989 0.095445 5.2188E-05 0.18178 9.9393E-05 0.27722 0.00015158 546.7822912040778 138.6 0.88579 133.65 133.25 134.14 -4.952 63 24 3 0 0 0 0.074859 3 26670 26653;26670;26712 71.922 20.292 1 17947000 15102 3628 9885 9888 15196;15197;15198 15197 0.007777155151870829 FLQEGDLISA 10 Unmodified _FLQEGDLISA_ 0 0 0 nc|ENSG00000130713|Q13868-3|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7861938476562 2 546.782222 1091.54989 0.32554 0.000178 0.056218 3.0739E-05 0.38176 0.00020874 546.7821683469981 138.52 0.95538 133.68 133.23 134.19 -4.84 74 26 4 0 0 0 0.39316 1 26740 26740 31.268 12.895 1 18585000 15103 3628 9885 9888 15199 15199 0.007777155151870829 FLQELPVSR 9 Unmodified _FLQELPVSR_ 0 0 0 REV__ENST00000527357.5_1_11:803618-803708:-|nuORF REV__ENST00000527357.5_1_11:803618-803708:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.88897705078125 3 363.541475 1087.60259 -0.10465 -3.8046E-05 0.59635 0.0002168 0.4917 0.00017875 363.54140208915226 84.029 0.69809 84.029 83.683 84.381 0 41 19 3 0 0 0 0.2932 1 16349 16349 0.12781 0 1 1972100 + 15104 22704 9886 9889 15200 15200 0.062297183686723656 FLQPELVKL 9 Unmodified _FLQPELVKL_ 0 0 0 PSME4|p.K933Nfs*8|1|0.33|ENSG00000068878|chr2:53906854-53906854|T/-|frameshift_variant;PSME4|p.V1190Cfs*2|1|0.15|ENSG00000068878|chr2:53897908-53897909|-/A|frameshift_variant;nc|ENSG00000068878|Q14997-2|PSME4;ENSG00000068878|ENST00000404125|PSME4 PSME4|p.K933Nfs*8|1|0.33|ENSG00000068878|chr2:53906854-53906854|T/-|frameshift_variant PSME4|p.K933Nfs*8|1|0.33|ENSG00000068878|chr2:53906854-53906854|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7696533203125 2 543.831517 1085.64848 NaN NaN NaN NaN NaN NaN NaN 158.41 1 158.41 157.91 158.91 0 0 0 0 0.12123 1 31806 31806 34.402 9.0024 1 15105 1411 9887 9890 15201 15201 0.10908363550902322 FLQPELVKL 9 Unmodified _FLQPELVKL_ 0 0 0 PSME4|p.K933Nfs*8|1|0.33|ENSG00000068878|chr2:53906854-53906854|T/-|frameshift_variant;PSME4|p.V1190Cfs*2|1|0.15|ENSG00000068878|chr2:53897908-53897909|-/A|frameshift_variant;nc|ENSG00000068878|Q14997-2|PSME4;ENSG00000068878|ENST00000404125|PSME4 PSME4|p.K933Nfs*8|1|0.33|ENSG00000068878|chr2:53906854-53906854|T/-|frameshift_variant PSME4|p.K933Nfs*8|1|0.33|ENSG00000068878|chr2:53906854-53906854|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7894287109375 2 543.831517 1085.64848 0.55843 0.00030369 -1.2899 -0.0007015 -0.7315 -0.00039781 543.8307427876722 163.54 0.30716 158.48 158.32 158.63 -5.0648 13 8 2 0 0 0 0.17935 1 31832 31832 39.95 13.066 1 7718400 15106 1411 9887 9890 15202 15202 0.10908363550902322 FLQPSQPL 8 Unmodified _FLQPSQPL_ 0 0 0 REV__tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 REV__tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2581481933594 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 152.89 1 148.12 147.62 148.62 -4.7684 0 0 0 0.21486 1 30381 30381 12.532 0.89125 1 + 15107 25225 9888 9891 15203 15203 0.034706863857991266 FLQWSLTTLRN 11 Unmodified _FLQWSLTTLRN_ 0 0 0 REV__nc|ENSG00000140538|Q16288-5|NTRK3 REV__nc|ENSG00000140538|Q16288-5|NTRK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2388916015625 3 460.254105 1377.74048 0.31301 0.00014406 -0.18236 -8.3931E-05 0.13065 6.0134E-05 460.25399586630243 117.09 0.7581 112.51 112.26 113.02 -4.5815 53 21 4 0 0 0 0.55819 1 22450 22450 0.2986 0.1266 1 2966400 + 15108 16585 9889 9892 15204 15204 0.06672421897269487 FLRAGPGG 8 Unmodified _FLRAGPGG_ 0 0 0 REV__nc|ENSG00000122741|Q5QP82-2|DCAF10 REV__nc|ENSG00000122741|Q5QP82-2|DCAF10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7171630859375 2 387.716488 773.418422 NaN NaN NaN NaN NaN NaN NaN 42.102 1 42.102 41.602 42.602 0 0 0 0 0.23664 1 7868 7868 3.2813 2.5999 1 + 15109 15704 9890 9893 15205 15205 0.02264994728614056 FLRALFLQI 9 Unmodified _FLRALFLQI_ 0 0 0 REV__ENST00000578529.5_1_18:214628-260326:-|nuORF REV__ENST00000578529.5_1_18:214628-260326:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2160949707031 3 374.234093 1119.68045 0.08042 3.0096E-05 -0.2061 -7.7131E-05 -0.12568 -4.7035E-05 374.23395890964326 139.73 0.76431 134.78 134.42 135.19 -4.952 50 21 3 0 0 0 0.59831 1 26867 26867 0.029283 0 1 6313300 + 15110 14391 9891 9894 15206 15206 0.12539776024686944 FLRALFLQI 9 Unmodified _FLRALFLQI_ 0 0 0 REV__ENST00000578529.5_1_18:214628-260326:-|nuORF REV__ENST00000578529.5_1_18:214628-260326:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20660400390625 3 374.234093 1119.68045 -0.42849 -0.00016035 0.33069 0.00012376 -0.097793 -3.6598E-05 374.23412447011174 139.7 0.80579 134.85 134.39 135.19 -4.8492 62 22 4 0 0 0 0.72996 1 26905 26905 4.897 1.31 1 7939100 + 15111 14391 9891 9894 15207 15207 0.12539776024686944 FLRALFLQI 9 Unmodified _FLRALFLQI_ 0 0 0 REV__ENST00000578529.5_1_18:214628-260326:-|nuORF REV__ENST00000578529.5_1_18:214628-260326:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.234093 1119.68045 -0.20178 -7.5512E-05 0.064904 2.4289E-05 -0.13687 -5.1222E-05 374.2340685562954 139.4 0.72517 134.76 134.38 135.1 -4.6439 -0.036168 -4.1662E-06 NaN 0.029283 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 8324700 + 15112 14391 9891 9894 0.12539776024686944 FLRALFLQI 9 Unmodified _FLRALFLQI_ 0 0 0 REV__ENST00000578529.5_1_18:214628-260326:-|nuORF REV__ENST00000578529.5_1_18:214628-260326:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 374.234093 1119.68045 0.08042 3.0096E-05 -0.2061 -7.7131E-05 -0.12568 -4.7035E-05 374.23395890964326 139.73 0.76431 134.78 134.42 135.19 -4.952 -0.018304 -0.00030843 NaN 0.029283 50 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6313300 + 15113 14391 9891 9894 0.12539776024686944 FLRALFLQI 9 Unmodified _FLRALFLQI_ 0 0 0 REV__ENST00000578529.5_1_18:214628-260326:-|nuORF REV__ENST00000578529.5_1_18:214628-260326:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 374.234093 1119.68045 -0.42849 -0.00016035 0.33069 0.00012376 -0.097793 -3.6598E-05 374.23412447011174 139.7 0.80579 134.85 134.39 135.19 -4.8492 0.054472 0.00029424 NaN 0.029283 62 22 4 NaN NaN NaN NaN 0 NaN NaN 0 7939100 + 15114 14391 9891 9894 0.12539776024686944 FLREAALRLHF 11 Unmodified _FLREAALRLHF_ 0 0 0 ENST00000440282.5_1_10:13485344-13485509:-|nuORF ENST00000440282.5_1_10:13485344-13485509:-|nuORF ENST00000440282.5_1_10:13485344-13485509:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2746887207031 3 458.266456 1371.77754 NaN NaN NaN NaN NaN NaN NaN 130.34 1 125.57 125.07 126.07 -4.7725 0 0 0 0.22632 1 25084 25084 0.094841 0 1 15115 9883 9892 9895 15208 15208 0.10652138233672304 FLRQDELAA 9 Unmodified _FLRQDELAA_ 0 0 0 ENST00000556548.5_1_14:24911313-24911538:-|nuORF ENST00000556548.5_1_14:24911313-24911538:-|nuORF ENST00000556548.5_1_14:24911313-24911538:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2869262695312 2 531.782556 1061.55056 0.082529 4.3887E-05 0.053087 2.8231E-05 0.13562 7.2118E-05 531.7825542921472 117.89 1.1598 117.89 117.38 118.54 0 107 32 4 0 0 0 0.38188 1 23226 23226 26.884 3.0939 1 123050000 15116 11241 9893 9896 15209 15209 0.022245549548870258 FLRQDELAA 9 Unmodified _FLRQDELAA_ 0 0 0 ENST00000556548.5_1_14:24911313-24911538:-|nuORF ENST00000556548.5_1_14:24911313-24911538:-|nuORF ENST00000556548.5_1_14:24911313-24911538:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2869262695312 2 531.782556 1061.55056 0.85709 0.00045578 -0.63267 -0.00033644 0.22441 0.00011934 531.7822124287893 122.25 1.3154 117.56 117.06 118.37 -4.6873 103 37 4 0 0 0 0.48644 1 23527 23527 20.454 4.3045 1 104910000 15117 11241 9893 9896 15210 15210 0.022245549548870258 FLRRRRRFKKK 11 Unmodified _FLRRRRRFKKK_ 0 0 0 ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176692|ENST00000649859|FOXC2 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.0625305175781 5 319.011657 1590.0219 -2.2933 -0.0007316 -0.001541 -4.916E-07 -2.2949 -0.0007321 319.01164837984896 6.8465 1.046 5.8317 5.5534 6.5994 -1.0148 36 29 2 0 0 0 0.96228 1 481 481 0 0 1 224430 15118 1265 9894 9897 15211 15211 0.25049061838103626 FLRRRRRRRRC 11 Unmodified _FLRRRRRRRRC_ 0 0 0 REV__ENST00000550735.6_1_12:112280040-112280175:+|nuORF REV__ENST00000550735.6_1_12:112280040-112280175:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7880249023438 3 544.334315 1629.98112 0.32235 0.00017547 1.3119 0.0007141 1.6342 0.00088957 544.3339841213275 149.76 0.21123 145.02 144.87 145.08 -4.7323 6 5 2 0 0 0 0.89134 1 29736 29736 0.094841 0.068635 1 948650 + 15119 22927 9895 9898 15212 15212 0.1913239724685809 FLRRTHRY 8 Unmodified _FLRRTHRY_ 0 0 0 REV__ENST00000463323.1_1_3:119378858-119379392:-|nuORF REV__ENST00000463323.1_1_3:119378858-119379392:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3138427734375 2 574.825424 1147.63629 0.33271 0.00019125 -1.0838 -0.00062299 -0.75108 -0.00043174 574.824537545097 103.16 0.66508 98.829 98.423 99.088 -4.3288 39 17 3 0 0 0 0.73426 1 19715 19715 9.3474 9.3474 1 3036700 + 15120 21919 9896 9899 15213 15213 0.06838184651087431 FLRRTHRY 8 Unmodified _FLRRTHRY_ 0 0 0 REV__ENST00000463323.1_1_3:119378858-119379392:-|nuORF REV__ENST00000463323.1_1_3:119378858-119379392:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 574.825424 1147.63629 -0.10165 -5.8431E-05 -0.14783 -8.4979E-05 -0.24948 -0.00014341 574.8247421478688 102.97 0.52985 98.779 98.481 99.01 -4.1861 -0.060738 0.00072461 NaN 9.3474 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2589900 + 15121 21919 9896 9899 0.06838184651087431 FLRRTHRY 8 Unmodified _FLRRTHRY_ 0 0 0 REV__ENST00000463323.1_1_3:119378858-119379392:-|nuORF REV__ENST00000463323.1_1_3:119378858-119379392:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 574.825424 1147.63629 0.33271 0.00019125 -1.0838 -0.00062299 -0.75108 -0.00043174 574.824537545097 103.16 0.66508 98.829 98.423 99.088 -4.3288 -0.011111 -0.00035142 NaN 9.3474 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3036700 + 15122 21919 9896 9899 0.06838184651087431 FLRRTHRY 8 Unmodified _FLRRTHRY_ 0 0 0 REV__ENST00000463323.1_1_3:119378858-119379392:-|nuORF REV__ENST00000463323.1_1_3:119378858-119379392:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 574.825424 1147.63629 0.57853 0.00033256 -0.89242 -0.00051298 -0.31388 -0.00018043 575.3267344320362 102.93 0.51286 98.912 98.589 99.102 -4.0212 0.071848 -0.0001314 NaN 9.3474 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3722200 + 15123 21919 9896 9899 0.06838184651087431 FLRRYFWKRQE 11 Unmodified _FLRRYFWKRQE_ 0 0 0 ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7718505859375 3 543.631798 1627.87356 0.47054 0.0002558 3.6424 0.0019801 4.113 0.0022359 543.6339417049134 153.73 0.13589 148.51 148.42 148.55 -5.2209 5 3 2 0 0 0 0.96216 1 29794 29794 1.3296 1.2348 1 918430 15124 18 9897 9900 15214 15214 0.08474286073783333 FLRVYRLV 8 Unmodified _FLRVYRLV_ 0 0 0 REV__ENST00000546957.1_1_12:56223229-56223322:-|nuORF REV__ENST00000546957.1_1_12:56223229-56223322:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2683715820312 2 533.332019 1064.64948 NaN NaN NaN NaN NaN NaN NaN 133.34 1 128.7 128.2 129.2 -4.6399 0 0 0 0.21486 1 26287 26287 5.7604 0.52976 1 + 15125 22901 9898 9901 15215 15215 0.11974622710431504 FLRWWQWHRLK 11 Unmodified _FLRWWQWHRLK_ 0 0 0 REV__nc|ENSG00000105357|Q7Z406|MYH14 REV__nc|ENSG00000105357|Q7Z406|MYH14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 552.3390502929688 3 552.640516 1654.89972 NaN NaN NaN NaN NaN NaN NaN 172.92 1 168.04 167.54 168.54 -4.881 0 0 0 0.22632 1 34353 34353 0.172 0.17144 1 + 15126 14980 9899 9902 15216 15216 0.09846600035893971 FLSAGERSL 9 Unmodified _FLSAGERSL_ 0 0 0 ENST00000357765.6_1_2:99225129-99226362:+|nuORF ENST00000357765.6_1_2:99225129-99226362:+|nuORF ENST00000357765.6_1_2:99225129-99226362:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26434326171875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 51.673 1 48.791 48.291 49.291 -2.8824 0 0 0 0.16777 1 9821 9821 22.736 5.6234 1 15127 8982 9900 9903 15217 15217 0.023328834091330464 FLSAGERSL 9 Unmodified _FLSAGERSL_ 0 0 0 ENST00000357765.6_1_2:99225129-99226362:+|nuORF ENST00000357765.6_1_2:99225129-99226362:+|nuORF ENST00000357765.6_1_2:99225129-99226362:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2648010253906 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 51.936 1 49.054 48.554 49.554 -2.8824 0 0 0 0.19512 1 9875 9875 12.241 2.1667 1 15128 8982 9900 9903 15218 15218 0.023328834091330464 FLSAGERSL 9 Unmodified _FLSAGERSL_ 0 0 0 ENST00000357765.6_1_2:99225129-99226362:+|nuORF ENST00000357765.6_1_2:99225129-99226362:+|nuORF ENST00000357765.6_1_2:99225129-99226362:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2644958496094 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 51.736 1 48.684 48.184 49.184 -3.0517 0 0 0 0.16777 1 9537 9537 22.736 22.357 1 15129 8982 9900 9903 15219 15219 0.023328834091330464 FLSGYMWY 8 Unmodified _FLSGYMWY_ 0 0 0 ENSG00000123684|ENST00000366997|LPGAT1 ENSG00000123684|ENST00000366997|LPGAT1 ENSG00000123684|ENST00000366997|LPGAT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2846069335938 2 533.738771 1065.46299 0.40324 0.00021522 -0.48632 -0.00025957 -0.08308 -4.4343E-05 534.2400117966623 133.95 0.16649 129.08 128.96 129.13 -4.8726 5 4 2 0 0 0 0.96284 1 25739 25739 19.439 1.304 1 1307300 15130 3279 9901 9904 15220 15220 -0.06712362240205039 FLSPKYQIR 9 Unmodified _FLSPKYQIR_ 0 0 0 REV__ENSG00000205301|ENST00000511113|MGAT4D REV__ENSG00000205301|ENST00000511113|MGAT4D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3307495117188 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 152.28 1 152.28 151.78 152.78 0 0 0 0 0.19649 1 30503 30503 0.029283 0 1 + 15131 19585 9902 9905 15221 15221 0.08057997639639325 FLSQFLVSGP 10 Unmodified _FLSQFLVSGP_ 0 0 0 REV__SALL4|p.P347L|1|0.11|ENSG00000101115|chr20:51791443-51791443|G/A|missense_variant REV__SALL4|p.P347L|1|0.11|ENSG00000101115|chr20:51791443-51791443|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7761840820312 2 547.797675 1093.5808 NaN NaN NaN NaN NaN NaN NaN 137.07 1 137.07 136.57 137.57 0 0 0 0 0.22588 1 27173 27173 6.7232 0.51738 1 + 15132 24591 9903 9906 15222 15222 0.03774913620100051 FLSQGGYHRS 10 Unmodified _FLSQGGYHRS_ 0 0 0 ZSWIM6|p.G383R|1|0.21|ENSG00000130449|chr5:61490899-61490899|G/A|missense_variant ZSWIM6|p.G383R|1|0.21|ENSG00000130449|chr5:61490899-61490899|G/A|missense_variant ZSWIM6|p.G383R|1|0.21|ENSG00000130449|chr5:61490899-61490899|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3243408203125 2 576.283254 1150.55196 NaN NaN NaN NaN NaN NaN NaN 96.562 1 96.562 96.062 97.062 0 0 0 0 0.22583 1 18918 18918 13.906 1.6654 1 15133 26643 9904 9907 15223 15223 -0.01729810956339861 FLSSGLIDK 9 Unmodified _FLSSGLIDK_ 0 0 0 ENSG00000170876|ENST00000306077|TMEM43 ENSG00000170876|ENST00000306077|TMEM43 ENSG00000170876|ENST00000306077|TMEM43 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2766418457031 2 490.276575 978.538597 0.20087 9.8484E-05 -0.47429 -0.00023253 -0.27342 -0.00013405 490.2762698114041 73.157 0.77792 73.157 72.919 73.697 0 28 21 2 0 0 0 0.40602 1 14278 14278 25.399 0 1 705950 15134 6105 9905 9908 15224 15224 0.048469382116991255 FLSSGLIDK 9 Unmodified _FLSSGLIDK_ 0 0 0 ENSG00000170876|ENST00000306077|TMEM43 ENSG00000170876|ENST00000306077|TMEM43 ENSG00000170876|ENST00000306077|TMEM43 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2761535644531 2 490.276575 978.538597 -0.10527 -5.1612E-05 1.0164 0.00049832 0.91113 0.0004467 490.27663251548023 76.843 0.50006 73.209 73.028 73.528 -3.6337 31 13 3 0 0 0 0.40602 1 14681 14681 25.399 0 1 2226400 15135 6105 9905 9908 15225 15225 0.048469382116991255 FLSVLRRFSTR 11 Unmodified _FLSVLRRFSTR_ 0 0 0 ENST00000486327.6_1_19:47879673-47879823:+|nuORF ENST00000486327.6_1_19:47879673-47879823:+|nuORF ENST00000486327.6_1_19:47879673-47879823:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5397644042969 3 461.273611 1380.799 NaN NaN NaN NaN NaN NaN NaN 114.03 1 109.56 109.06 110.06 -4.4726 0 0 0 0.22632 1 22471 22471 0.50596 0 1 15136 10454 9906 9909 15226 15226 0.12383523262406015 FLTAWPPP 8 Unmodified _FLTAWPPP_ 0 0 0 REV__RTKN2|p.D475H|1|0.21|ENSG00000182010|chr10:62198315-62198315|C/G|missense_variant REV__RTKN2|p.D475H|1|0.21|ENSG00000182010|chr10:62198315-62198315|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.4674072265625 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 36.894 1 36.894 36.394 37.394 0 0 0 0 0.23366 1 6810 6810 0.62683 0.50396 1 + 15137 18750 9907 9910 15227 15227 0.018796052196989876 FLTGVTTEL 9 Unmodified _FLTGVTTEL_ 0 0 0 ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant;ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25848388671875 2 490.768583 979.522613 0.21314 0.0001046 0.35701 0.00017521 0.57015 0.00027981 490.7685944659657 150.41 0.55933 145.21 144.85 145.41 -5.1994 25 15 2 0 0 0 0.074448 1 29107 29107 26.995 22.279 1 3010000 15138 6543 9908 9911 15228 15228 0.032032319747941074 FLTHITLEI 9 Unmodified _FLTHITLEI_ 0 0 0 ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7945556640625 2 543.813325 1085.6121 NaN NaN NaN NaN NaN NaN NaN 153.75 1 148.99 148.49 149.49 -4.7684 0 0 0 0.15147 1 30555 30555 30.225 8.6878 1 15139 7335 9909 9912 15229 15229 0.07271486654190085 FLTHITLEI 9 Unmodified _FLTHITLEI_ 0 0 0 ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.787841796875 2 543.813325 1085.6121 NaN NaN NaN NaN NaN NaN NaN 154.28 1 149.01 148.51 149.51 -5.2669 0 0 0 0.16473 1 29914 29914 2.8827 0 1 15140 7335 9909 9912 15230 15230 0.07271486654190085 FLTHITLEI 9 Unmodified _FLTHITLEI_ 0 0 0 ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.787841796875 2 543.813325 1085.6121 NaN NaN NaN NaN NaN NaN NaN 154.31 1 149.04 148.54 149.54 -5.2669 0 0 0 0.15147 1 29919 29919 30.225 9.3536 1 15141 7335 9909 9912 15231 15231 0.07271486654190085 FLTHITLEI 9 Unmodified _FLTHITLEI_ 0 0 0 ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7708740234375 2 543.813325 1085.6121 NaN NaN NaN NaN NaN NaN NaN 154.47 1 149.19 148.69 149.69 -5.2854 0 0 0 0.22251 1 29952 29952 16.942 2.3606 1 15142 7335 9909 9912 15232 15232 0.07271486654190085 FLTKMSPR 8 Unmodified _FLTKMSPR_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27294921875 2 490.273312 978.532072 NaN NaN NaN NaN NaN NaN NaN 167.01 1 162.12 161.62 162.62 -4.8916 0 0 0 0.21486 1 32786 32786 8.5933 0 1 + 15143 19273 9910 9913 15233 15233 0.04194721779356314 FLTRFFKK 8 Unmodified _FLTRFFKK_ 0 0 0 REV__tr|U7T0H4|U7T0H4_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00943PE=3SV=1 REV__tr|U7T0H4|U7T0H4_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00943PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7758178710938 2 543.826569 1085.63859 NaN NaN NaN NaN NaN NaN NaN 148.78 1 148.78 148.28 149.28 0 0 0 0 0.23366 1 29778 29778 0.063987 0 1 + 15144 25271 9911 9914 15234 15234 0.09919220336178114 FLTRPQSL 8 Unmodified _FLTRPQSL_ 0 0 0 REV__ENST00000009105.5_1_1:209782395-209783261:+|nuORF REV__ENST00000009105.5_1_1:209782395-209783261:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7783203125 2 481.276909 960.539266 0.053569 2.5782E-05 0.26918 0.00012955 0.32275 0.00015533 481.27704957077964 115.42 0.6496 110.95 110.6 111.25 -4.4726 34 18 2 0 0 0 8448 1 22714 22714 6.1918 0 1 3868200 + 15145 19968 9912 9915 15235 15235 0.05741777651417124 FLTRRTSY 8 Unmodified _FLTRRTSY_ 0 0 0 ENST00000521390.5_1_5:156887274-156894344:+|nuORF ENST00000521390.5_1_5:156887274-156894344:+|nuORF ENST00000521390.5_1_5:156887274-156894344:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2793579101562 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 162.59 1 157.4 156.9 157.9 -5.1878 0 0 0 0.21486 1 31578 31578 9.3474 0.75416 1 15146 10844 9913 9916 15236 15236 0.03640278537386621 FLVAAATG 8 Unmodified _FLVAAATG_ 0 0 0 nc|ENSG00000282122|A0A0J9YVY3|IGHV7-4-1;nc|ENSG00000211979|A0A0B4J1V7|IGHV7-81;nc|ENSG00000211950|A0A0C4DH33|IGHV1-24;nc|ENSG00000211945|A0A0C4DH31|IGHV1-18;nc|ENSG00000211935|A0A0C4DH29|IGHV1-3;nc|ENSG00000211934|P23083|IGHV1-2 nc|ENSG00000282122|A0A0J9YVY3|IGHV7-4-1 nc|ENSG00000282122|A0A0J9YVY3|IGHV7-4-1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2124938964844 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 64.49 1 61.032 60.532 61.532 -3.4581 0 0 0 0.23664 1 12061 12061 3.2813 0 1 15147 12582 9914 9917 15237 15237 0.02767056777236121 FLVDHQMC 8 Carbamidomethyl (C),Oxidation (M) _FLVDHQM(Oxidation (M))C(Carbamidomethyl (C))_ FLVDHQMC(1) FLVDHQM(1)C FLVDHQMC(61) FLVDHQM(61)C 0 1 1 REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2694091796875 2 533.228245 1064.44194 -0.10553 -5.6273E-05 1.0391 0.00055406 0.93354 0.00049779 533.2286856386419 104.27 0.68051 100.05 99.791 100.47 -4.2183 41 19 3 0 0 0 0.10891 1 20511 20511 61.357 29.052 1 6277600 + 15148 12882 9915 9918 15238 15238 13 118 -0.08770695611383417 FLVDHQMC 8 Carbamidomethyl (C),Oxidation (M) _FLVDHQM(Oxidation (M))C(Carbamidomethyl (C))_ 0 1 1 REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.228245 1064.44194 0.38295 0.0002042 0.4308 0.00022972 0.81376 0.00043392 533.2284143157299 99.731 0.589 99.731 99.446 100.03 0 -0.23058 -1.068E-05 NaN 61.357 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4617700 + 15149 12882 9915 9918 13 118 -0.08770695611383417 FLVDHQMC 8 Carbamidomethyl (C),Oxidation (M) _FLVDHQM(Oxidation (M))C(Carbamidomethyl (C))_ 0 1 1 REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 533.228245 1064.44194 -0.10553 -5.6273E-05 1.0391 0.00055406 0.93354 0.00049779 533.2286856386419 104.27 0.68051 100.05 99.791 100.47 -4.2183 0.085065 0.00063801 NaN 61.357 41 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6277600 + 15150 12882 9915 9918 13 118 -0.08770695611383417 FLVDVMNYFL 10 Unmodified _FLVDVMNYFL_ 0 0 0 ENSG00000173214|ENST00000671876|MFSD4B ENSG00000173214|ENST00000671876|MFSD4B ENSG00000173214|ENST00000671876|MFSD4B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7763671875 2 630.820292 1259.62603 NaN NaN NaN NaN NaN NaN NaN 164.21 1 164.21 163.71 164.71 0 0 0 0 0.22588 1 33178 33178 7.2892 0.56607 1 15151 6277 9916 9919 15239 15239 0.006603960909615125 FLVKKKKTS 9 Unmodified _FLVKKKKTS_ 0 0 0 REV__ENST00000538466.5_1_6:111982525-111982588:-|nuORF REV__ENST00000538466.5_1_6:111982525-111982588:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018127441406 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 134.18 1 129.54 129.04 130.04 -4.6399 0 0 0 0.23508 1 26458 26458 2.4985 1.3051 1 + 15152 22841 9917 9920 15240 15240 0.15527758679127146 FLVKKKKTS 9 Unmodified _FLVKKKKTS_ 0 0 0 REV__ENST00000538466.5_1_6:111982525-111982588:-|nuORF REV__ENST00000538466.5_1_6:111982525-111982588:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2088317871094 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 72.676 1 69.048 68.548 69.548 -3.6275 0 0 0 0.1963 1 13725 13725 0 0 1 + 15153 22841 9917 9920 15241 15241 0.15527758679127146 FLVKKKKTS 9 Unmodified _FLVKKKKTS_ 0 0 0 REV__ENST00000538466.5_1_6:111982525-111982588:-|nuORF REV__ENST00000538466.5_1_6:111982525-111982588:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.212890625 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 131.73 1 126.93 126.43 127.43 -4.799 0 0 0 0.1963 1 25359 25359 0 0 1 + 15154 22841 9917 9920 15242 15242 0.15527758679127146 FLVLTVKV 8 Unmodified _FLVLTVKV_ 0 0 0 REV__tr|U7SNM7|U7SNM7_FUSNUTranslationinitiationfactorIF-3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01818PE=3SV=1 REV__tr|U7SNM7|U7SNM7_FUSNUTranslationinitiationfactorIF-3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01818PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2398376464844 2 459.804771 917.59499 -0.07971 -3.6651E-05 0.59161 0.00027203 0.5119 0.00023538 459.8050508910573 61.733 0.61201 61.733 61.36 61.972 0 28 17 2 0 0 0 0.89147 1 11808 11808 0.68139 0.42991 1 3555400 + 15155 24986 9918 9921 15243 15243 0.13289610839035504 FLVNYTAT 8 Unmodified _FLVNYTAT_ 0 0 0 ENSG00000139433|ENST00000318348|GLTP ENSG00000139433|ENST00000318348|GLTP ENSG00000139433|ENST00000318348|GLTP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.68 1 71.004 70.504 71.504 -3.6764 0 0 0 0.23899 1 14117 14117 0.62683 0.62345 1 15156 4246 9919 9922 15244 15244 0.003546936318457483 FLVNYTAT 8 Unmodified _FLVNYTAT_ 0 0 0 ENSG00000139433|ENST00000318348|GLTP ENSG00000139433|ENST00000318348|GLTP ENSG00000139433|ENST00000318348|GLTP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.827 1 71.233 70.733 71.733 -3.594 0 0 0 0.23899 1 14217 14217 0.62683 0.62345 1 15157 4246 9919 9922 15245 15245 0.003546936318457483 FLVPKQSCEE 10 Unmodified _FLVPKQSCEE_ 0 0 0 REV__ENSG00000114656|ENST00000645291|CFAP92 REV__ENSG00000114656|ENST00000645291|CFAP92 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.261962890625 2 590.289356 1178.56416 NaN NaN NaN NaN NaN NaN NaN 164.76 1 159.7 159.2 160.2 -5.0648 0 0 0 0.22588 1 32154 32154 7.2892 1.0834 1 + 15158 15383 9920 9923 15246 15246 -0.01797955328174794 FLVPTILSIIS 11 Unmodified _FLVPTILSIIS_ 0 0 0 tr|U7T5U6|U7T5U6_FUSNUDUF4352domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00394PE=4SV=1 tr|U7T5U6|U7T5U6_FUSNUDUF4352domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00394PE=4SV=1 tr|U7T5U6|U7T5U6_FUSNUDUF4352domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00394PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.27490234375 2 601.873382 1201.73221 NaN NaN NaN NaN NaN NaN NaN 109.48 1 109.48 108.98 109.98 0 0 0 0 0.22775 1 21525 21525 10.074 2.7847 1 15159 26475 9921 9924 15247 15247 0.1394147492794673 FLVSTQKTY 9 Unmodified _FLVSTQKTY_ 0 0 0 SERPINB1|p.K203Ifs*10|1|0.36|ENSG00000021355|chr6:2835982-2835983|TT/-|frameshift_variant;ENSG00000021355|ENST00000380739|SERPINB1 SERPINB1|p.K203Ifs*10|1|0.36|ENSG00000021355|chr6:2835982-2835983|TT/-|frameshift_variant SERPINB1|p.K203Ifs*10|1|0.36|ENSG00000021355|chr6:2835982-2835983|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79443359375 2 543.795132 1085.57571 0.47278 0.00025709 -0.66262 -0.00036033 -0.18985 -0.00010324 543.7947802897844 154.02 0.56015 148.79 148.52 149.08 -5.2209 24 15 2 0 0 0 0.59384 1 29800 29800 13.508 1.8676 1 1537700 15160 1125 9922 9925 15248 15248 0.03634609757477847 FLWDWPFL 8 Unmodified _FLWDWPFL_ 0 0 0 REV__ENST00000376156.7_1_11:77824966-77825005:-|nuORF REV__ENST00000376156.7_1_11:77824966-77825005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 562.0820922851562 2 562.284203 1122.55385 NaN NaN NaN NaN NaN NaN NaN 163.62 1 158.83 158.33 159.33 -4.7898 0 0 0 0.23749 1 32631 32631 0.12286 0 1 + 15161 21075 9923 9926 15249 15249 -0.00252150200435608 FLWLARKL 8 Unmodified _FLWLARKL_ 0 0 0 ENST00000444720.1_1_13:21321226-21321529:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN ENST00000444720.1_1_13:21321226-21321529:-|nuORF ENST00000444720.1_1_13:21321226-21321529:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6815795898438 2 523.829112 1045.64367 NaN NaN NaN NaN NaN NaN NaN 158.3 1 153.03 152.53 153.53 -5.2712 0 0 0 0.2396 1 30716 30716 0.0082765 0 1 15162 3718 9924 9927 15250 15250 0.12267524198796309 FLWRRRRRLLR 11 Unmodified _FLWRRRRRLLR_ 0 0 0 ENST00000368742.3_1_1:153234210-153234426:+|nuORF ENST00000368742.3_1_1:153234210-153234426:+|nuORF ENST00000368742.3_1_1:153234210-153234426:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7866821289062 3 543.346326 1627.01715 0.29987 0.00016293 -2.5973 -0.0014112 -2.2975 -0.0012483 543.344424668392 145.26 0.173 140.59 140.44 140.62 -4.6694 6 4 2 0 0 0 0.89122 1 28770 28770 0.00056442 0.00056442 1 2363000 15163 9100 9925 9928 15251 15251 0.22872177695376195 FLYDETNMDP 10 Unmodified _FLYDETNMDP_ 0 0 0 REV__nc|ENSG00000067606|Q05513-2|PRKCZ REV__nc|ENSG00000067606|Q05513-2|PRKCZ MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7677612304688 2 622.760629 1243.5067 NaN NaN NaN NaN NaN NaN NaN 68.978 1 65.442 64.942 65.942 -3.5362 0 0 0 0.22588 1 12978 12978 11.64 0.81637 1 + 15164 14214 9926 9929 15252 15252 -0.10530842324419609 FLYDETNMDP 10 Unmodified _FLYDETNMDP_ 0 0 0 REV__nc|ENSG00000067606|Q05513-2|PRKCZ REV__nc|ENSG00000067606|Q05513-2|PRKCZ MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7822875976562 2 622.760629 1243.5067 NaN NaN NaN NaN NaN NaN NaN 69.035 1 65.499 64.999 65.999 -3.5362 0 0 0 0.22588 1 12991 12991 7.2892 2.0586 1 + 15165 14214 9926 9929 15253 15253 -0.10530842324419609 FLYDTHQNL 9 Unmodified _FLYDTHQNL_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3361206054688 2 575.780013 1149.54547 0.017869 1.0289E-05 -0.52729 -0.00030361 -0.50943 -0.00029332 575.7798285209831 100.53 0.41389 96.367 96.22 96.634 -4.1594 20 11 2 0 0 0 0.39189 1 19745 19745 26.268 8.8255 1 1808400 15166 7413 9927 9930 15254 15254 -0.02331748907704423 FLYDTHQNL 9 Unmodified _FLYDTHQNL_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3369140625 2 575.780013 1149.54547 0.33026 0.00019016 -0.94496 -0.00054409 -0.6147 -0.00035393 575.7794415262457 100.49 0.54263 96.498 96.21 96.753 -3.9895 26 15 2 0 0 0 0.17935 1 19282 19282 39.95 11.463 1 1712000 15167 7413 9927 9930 15255 15255 -0.02331748907704423 FLYDTHQNL 9 Unmodified _FLYDTHQNL_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 575.780013 1149.54547 0.38141 0.00021961 -0.73091 -0.00042084 -0.3495 -0.00020123 575.7796725537795 100.72 0.64713 96.423 96.055 96.702 -4.297 -0.0058254 -9.6213E-07 NaN 39.95 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1363900 15168 7413 9927 9930 -0.02331748907704423 FLYIKEKL 8 Unmodified _FLYIKEKL_ 0 0 0 REV__DHRS7|p.D104Ifs*9|1|0.26|ENSG00000100612|chr14:60154043-60154043|T/-|frameshift_variant REV__DHRS7|p.D104Ifs*9|1|0.26|ENSG00000100612|chr14:60154043-60154043|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 527.223388671875 2 527.320786 1052.62702 NaN NaN NaN NaN NaN NaN NaN 142.8 1 142.8 142.3 143.3 0 0 0 0 0.21486 1 28478 28478 8.5933 0 1 + 15169 13674 9928 9931 15256 15256 0.10280978522177975 FLYLLYVY 8 Unmodified _FLYLLYVY_ 0 0 0 REV__ENSG00000109501|ENST00000226760|WFS1 REV__ENSG00000109501|ENST00000226760|WFS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7844848632812 2 547.302062 1092.58957 0.32996 0.00018059 -0.90743 -0.00049664 -0.57747 -0.00031605 547.8030816695975 135.95 0.10239 135.95 135.88 135.99 0 4 2 2 0 0 0 0.72231 1 26922 26922 11.114 3.8252 1 1328500 + 15170 15164 9929 9932 15257 15257 0.04697887256565991 FLYLLYVY 8 Unmodified _FLYLLYVY_ 0 0 0 REV__ENSG00000109501|ENST00000226760|WFS1 REV__ENSG00000109501|ENST00000226760|WFS1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 547.302062 1092.58957 0.32996 0.00018059 -0.90743 -0.00049664 -0.57747 -0.00031605 547.8030816695975 135.95 0.10239 135.95 135.88 135.99 0 0 0 NaN 11.114 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1328500 + 15171 15164 9929 9932 0.04697887256565991 FMDEDEEVY 9 Unmodified _FMDEDEEVY_ 0 0 0 ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF ENSG00000140259|ENST00000267812|MFAP1 ENSG00000140259|ENST00000267812|MFAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2562866210938 2 588.723712 1175.43287 0.4406 0.00025939 -0.11584 -6.8196E-05 0.32476 0.00019119 588.7236624425617 99.078 1.5658 94.945 94.472 96.038 -4.1326 145 44 5 0 0 0 0.11447 6 19438 19402;19436;19438;19459;19533;19540 50.855 33.913 1 43850000 15172 4284 9930 9933 15258;15259;15260;15261;15262;15263 15260 -0.14782810486735798 FMDEDEEVY 9 Unmodified _FMDEDEEVY_ 0 0 0 ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF ENSG00000140259|ENST00000267812|MFAP1 ENSG00000140259|ENST00000267812|MFAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2576904296875 2 588.723712 1175.43287 0.62128 0.00036576 -0.18338 -0.00010796 0.4379 0.0002578 588.723518049893 99.223 1.437 94.953 94.511 95.948 -4.2692 115 41 4 0 0 0 0.14832 2 19002 19002;19015 44.407 27.465 1 19741000 15173 4284 9930 9933 15264;15265 15264 -0.14782810486735798 FMDHCDPD 8 Unmodified _FMDHCDPD_ 0 0 0 REV__ENSG00000179772|ENST00000375978|FOXS1 REV__ENSG00000179772|ENST00000375978|FOXS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2679443359375 2 490.167853 978.321152 NaN NaN NaN NaN NaN NaN NaN 145.38 1 140.31 139.81 140.81 -5.0671 0 0 0 0.23711 1 28091 28091 1.3295 0 1 + 15174 18666 9931 9934 15266 15266 -0.1688752332486274 FMDMETEIQRG 11 Unmodified _FMDMETEIQRG_ 0 0 0 ENST00000551199.1_1_12:50464670-50474246:+|nuORF ENST00000551199.1_1_12:50464670-50474246:+|nuORF ENST00000551199.1_1_12:50464670-50474246:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 452.8577575683594 3 452.868934 1355.58497 NaN NaN NaN NaN NaN NaN NaN 11.6 1 10.471 9.9709 10.971 -1.1293 0 0 0 0.22632 1 1383 1383 0.50596 0 1 15175 11181 9932 9935 15267 15267 -0.07859733010832315 FMDSESFYY 9 Oxidation (M) _FM(Oxidation (M))DSESFYY_ FM(1)DSESFYY FM(42)DSESFYY 0 0 1 INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant;INPP5F|p.A917Qfs*71|1|0.07|ENSG00000198825|chr10:119827129-119827130|-/CAGAGTG|frameshift_variant;ENSG00000198825|ENST00000650623|INPP5F;INPP5F|p.W211Gfs*5|1|0.37|ENSG00000198825|chr10:119792169-119792169|T/-|frameshift_variant;nc|ENSG00000198825|Q9Y2H2-3|INPP5F;INPP5F|p.P263Lfs*7|1|0.35|ENSG00000198825|chr10:119796827-119796827|C/-|frameshift_variant;nc|ENSG00000198825|Q9Y2H2-2|INPP5F INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2752685546875 2 602.728797 1203.44304 0.37754 0.00022755 -0.2514 -0.00015153 0.12614 7.6026E-05 602.7285298464277 114.85 0.58669 114.85 114.58 115.17 0 30 16 2 0 0 0 0.36689 1 22566 22566 42.095 27.256 1 6329700 15176 7502 9933 9936 15268 15268 103 -0.15054202761484703 FMDSESFYY 9 Oxidation (M) _FM(Oxidation (M))DSESFYY_ FM(1)DSESFYY FM(60)DSESFYY 0 0 1 INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant;INPP5F|p.A917Qfs*71|1|0.07|ENSG00000198825|chr10:119827129-119827130|-/CAGAGTG|frameshift_variant;ENSG00000198825|ENST00000650623|INPP5F;INPP5F|p.W211Gfs*5|1|0.37|ENSG00000198825|chr10:119792169-119792169|T/-|frameshift_variant;nc|ENSG00000198825|Q9Y2H2-3|INPP5F;INPP5F|p.P263Lfs*7|1|0.35|ENSG00000198825|chr10:119796827-119796827|C/-|frameshift_variant;nc|ENSG00000198825|Q9Y2H2-2|INPP5F INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2755737304688 2 602.728797 1203.44304 1.2789 0.00077084 -1.2036 -0.00072543 0.075353 4.5418E-05 602.7283471221709 120.13 0.73071 115.61 115.26 115.99 -4.5221 44 20 3 0 0 0 0.13419 1 23665 23665 60.39 57.108 1 6005700 15177 7502 9933 9936 15269 15269 103 -0.15054202761484703 FMDSESFYY 9 Oxidation (M) _FM(Oxidation (M))DSESFYY_ FM(1)DSESFYY FM(60)DSESFYY 0 0 1 INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant;INPP5F|p.A917Qfs*71|1|0.07|ENSG00000198825|chr10:119827129-119827130|-/CAGAGTG|frameshift_variant;ENSG00000198825|ENST00000650623|INPP5F;INPP5F|p.W211Gfs*5|1|0.37|ENSG00000198825|chr10:119792169-119792169|T/-|frameshift_variant;nc|ENSG00000198825|Q9Y2H2-3|INPP5F;INPP5F|p.P263Lfs*7|1|0.35|ENSG00000198825|chr10:119796827-119796827|C/-|frameshift_variant;nc|ENSG00000198825|Q9Y2H2-2|INPP5F INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2739868164062 2 602.728797 1203.44304 0.94624 0.00057032 -0.2126 -0.00012814 0.73364 0.00044219 602.7284461346625 120.13 0.52524 115.49 115.2 115.73 -4.645 26 14 2 0 0 0 0.13419 1 23050 23050 60.39 51.006 1 3114000 15178 7502 9933 9936 15270 15270 103 -0.15054202761484703 FMDSESFYY 9 Oxidation (M) _FM(Oxidation (M))DSESFYY_ FM(1)DSESFYY FM(78)DSESFYY 0 0 1 INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant;INPP5F|p.A917Qfs*71|1|0.07|ENSG00000198825|chr10:119827129-119827130|-/CAGAGTG|frameshift_variant;ENSG00000198825|ENST00000650623|INPP5F;INPP5F|p.W211Gfs*5|1|0.37|ENSG00000198825|chr10:119792169-119792169|T/-|frameshift_variant;nc|ENSG00000198825|Q9Y2H2-3|INPP5F;INPP5F|p.P263Lfs*7|1|0.35|ENSG00000198825|chr10:119796827-119796827|C/-|frameshift_variant;nc|ENSG00000198825|Q9Y2H2-2|INPP5F INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant INPP5F|p.K483Nfs*2|1|0.19|ENSG00000198825|chr10:119807935-119807935|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2919921875 2 602.728797 1203.44304 0.46329 0.00027924 -0.25629 -0.00015447 0.20701 0.00012477 602.7286546136933 119.9 0.82879 115.43 115.06 115.89 -4.467 35 23 2 0 0 0 0.064469 1 23098 23098 77.984 62.137 1 5023100 15179 7502 9933 9936 15271 15271 103 -0.15054202761484703 FMEKRIRRLYR 11 Unmodified _FMEKRIRRLYR_ 0 0 0 tr|U7STH5|U7STH5_FUSNUCRP/FNRfamilytranscriptionalregulator,anaerobicregulatoryproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01058PE=4SV=1 tr|U7STH5|U7STH5_FUSNUCRP/FNRfamilytranscriptionalregulator,anaerobicregulatoryproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01058PE=4SV=1 tr|U7STH5|U7STH5_FUSNUCRP/FNRfamilytranscriptionalregulator,anaerobicregulatoryproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01058PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6818237304688 3 523.304916 1566.89292 -0.51264 -0.00026827 -1.7917 -0.00093759 -2.3043 -0.0012059 523.3043491049435 142.41 0.17149 137.38 137.27 137.44 -5.0261 6 4 2 0 0 0 0.89074 1 27434 27434 0.50596 0.49867 1 1230700 15180 26150 9934 9937 15272 15272 0.1321491909307042 FMHMQESH 8 Unmodified _FMHMQESH_ 0 0 0 ENST00000245796.10_1_2:113960379-113960733:+|nuORF ENST00000245796.10_1_2:113960379-113960733:+|nuORF ENST00000245796.10_1_2:113960379-113960733:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.696044921875 2 523.712762 1045.41097 NaN NaN NaN NaN NaN NaN NaN 144.34 1 139.67 139.17 140.17 -4.6694 0 0 0 0.23711 1 28578 28578 0.0082765 0 1 15181 8206 9935 9938 15273 15273 -0.10991848925618797 FMIGFYPVI 9 Unmodified _FMIGFYPVI_ 0 0 0 REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43 REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78759765625 2 543.788264 1085.56198 0.084185 4.5779E-05 -0.0036044 -1.9601E-06 0.08058 4.3819E-05 543.7881708773742 56.029 0.41992 52.839 52.529 52.948 -3.1895 18 11 2 0 0 0 0.5428 1 10328 10328 4.897 0 1 2819600 + 15182 14368 9936 9939 15274 15274 0.022616607246845888 FMKVKPVA 8 Unmodified _FMKVKPVA_ 0 0 0 sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1;sp|F5HE12|UL35_HCMVMTegumentproteinUL35OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL35PE=3SV=1 sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1 sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2387390136719 2 460.275324 918.536095 NaN NaN NaN NaN NaN NaN NaN 75.05 1 71.327 70.827 71.827 -3.7227 0 0 0 0.23366 1 14189 14189 0.25148 0.2432 1 15183 25732 9937 9940 15275 15275 0.07356811273064068 FMKVKPVA 8 Unmodified _FMKVKPVA_ 0 0 0 sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1;sp|F5HE12|UL35_HCMVMTegumentproteinUL35OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL35PE=3SV=1 sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1 sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2387390136719 2 460.275324 918.536095 NaN NaN NaN NaN NaN NaN NaN 75.066 1 71.344 70.844 71.844 -3.7227 0 0 0 0.21486 1 14192 14192 5.7604 1.0044 1 15184 25732 9937 9940 15276 15276 0.07356811273064068 FMLRSLSLQ 9 Unmodified _FMLRSLSLQ_ 0 0 0 nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENSG00000038532|ENST00000409790|CLEC16A nc|ENSG00000038532|Q2KHT3-2|CLEC16A nc|ENSG00000038532|Q2KHT3-2|CLEC16A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.778564453125 2 547.804977 1093.5954 NaN NaN NaN NaN NaN NaN NaN 94.621 1 90.63 90.13 91.13 -3.9907 0 0 0 0.23508 1 18543 18543 6.7232 0 1 15185 1184 9938 9941 15277 15277 0.05234662496582132 FMNARTKNDF 10 Unmodified _FMNARTKNDF_ 0 0 0 CFH|p.T645Nfs*9|1|0.26|ENSG00000000971|chr1:196726523-196726524|-/A|frameshift_variant;ENST00000466229.5_1_1:196648727-196709933:+|nuORF;CFH|p.Q859Hfs*22|1|0.05|ENSG00000000971|chr1:196736986-196736987|-/TAATTGTATTT|frameshift_variant;nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH CFH|p.T645Nfs*9|1|0.26|ENSG00000000971|chr1:196726523-196726524|-/A|frameshift_variant CFH|p.T645Nfs*9|1|0.26|ENSG00000000971|chr1:196726523-196726524|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.765380859375 2 622.298047 1242.58154 0.29017 0.00018057 -0.00023129 -1.4393E-07 0.28994 0.00018043 622.2982189248304 71.569 0.81055 71.569 71.349 72.16 0 55 22 4 0 0 0 0.23665 1 13872 13872 3.5927 0 1 18644000 15186 505 9939 9942 15278 15278 -0.030046150025327734 FMQFIRFY 8 Unmodified _FMQFIRFY_ 0 0 0 REV__ENST00000316334.4_1_13:28120098-28120254:-|nuORF REV__ENST00000316334.4_1_13:28120098-28120254:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3216552734375 2 576.288963 1150.56337 0.29187 0.0001682 3.6271 0.0020903 3.919 0.0022585 576.7926323114859 123.2 0.39008 123.2 123.03 123.42 0 13 10 2 0 0 0 8448 1 24254 24254 0.62683 0 1 2061500 + 15187 20524 9940 9943 15279 15279 -0.00588705186532934 FMQVLQPG 8 Unmodified _FMQVLQPG_ 0 0 0 REV__ENST00000441073.1_1_9:19027536-19027863:+|nuORF REV__ENST00000441073.1_1_9:19027536-19027863:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2388610839844 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 71.094 1 67.514 67.014 68.014 -3.5798 0 0 0 0.21486 1 13404 13404 9.3474 0 1 + 15188 17808 9941 9944 15280 15280 0.0008305747965096089 FMRKKQYHS 9 Unmodified _FMRKKQYHS_ 0 0 0 REV__nc|ENSG00000166669|Q5U623-2|ATF7IP2 REV__nc|ENSG00000166669|Q5U623-2|ATF7IP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 612.8569946289062 2 612.81895 1223.62335 NaN NaN NaN NaN NaN NaN NaN 10.737 1 10.737 10.237 11.237 0 0 0 0 0.1963 1 1364 1364 0 0 1 + 15189 17863 9942 9945 15281 15281 0.02047985476701797 FMRKSIKEI 9 Unmodified _FMRKSIKEI_ 0 0 0 REV__nc|ENSG00000101938|Q9BU40-3|CHRDL1 REV__nc|ENSG00000101938|Q9BU40-3|CHRDL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3253173828125 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 138.5 1 138.5 138 139 0 0 0 0 0.19674 1 27502 27502 0.12781 0.11455 1 + 15190 14810 9943 9946 15282 15282 0.08394924422009353 FMRNLLRPVV 10 Unmodified _FMRNLLRPVV_ 0 0 0 REV__nc|ENSG00000151726|P33121-2|ACSL1 REV__nc|ENSG00000151726|P33121-2|ACSL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7749633789062 2 622.868443 1243.72233 1.1784 0.00073399 -0.40263 -0.00025079 0.77577 0.0004832 623.3683313644583 122.51 0.17552 117.96 117.88 118.06 -4.5476 5 4 2 0 0 0 0.53005 1 24168 24168 0.0013812 0 1 995770 + 15191 17080 9944 9947 15283 15283 0.1102200844154595 FMRPAVHA 8 Unmodified _FMRPAVHA_ 0 0 0 REV__ENSG00000114316|ENST00000265560|USP4 REV__ENSG00000114316|ENST00000265560|USP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 309.79248046875 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 104.84 1 104.84 104.34 105.34 0 0 0 0 0.21486 1 20605 20605 0.45834 0 1 + 15192 15368 9945 9948 15284 15284 0.008252992936263581 FMRQLFRYYIQ 11 Unmodified _FMRQLFRYYIQ_ 0 0 0 REV__ENSG00000119698|ENST00000304338|PPP4R4 REV__ENSG00000119698|ENST00000304338|PPP4R4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2742919921875 3 522.274623 1563.80204 NaN NaN NaN NaN NaN NaN NaN 93.847 1 93.847 93.347 94.347 0 0 0 0 0.22632 1 18372 18372 0.58532 0 1 + 15193 15592 9946 9949 15285 15285 0.04269030324940104 FMSAAHARFRD 11 Unmodified _FMSAAHARFRD_ 0 0 0 REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2335205078125 3 436.880384 1307.61932 NaN NaN NaN NaN NaN NaN NaN 134.74 1 130.1 129.6 130.6 -4.6399 0 0 0 0.23491 1 26573 26573 4.4062 1.9077 1 + 15194 24774 9947 9950 15286 15286 -0.022181040170607957 FMSAAHARFRD 11 Unmodified _FMSAAHARFRD_ 0 0 0 REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.228271484375 3 436.880384 1307.61932 0.31415 0.00013725 -0.43031 -0.00018799 -0.11616 -5.0746E-05 437.2153074315754 90.447 0.52244 86.403 86.128 86.651 -4.0443 19 14 2 0 0 0 0.59092 2 17216 17202;17216 4.4062 1.5629 1 439870 + 15195 24774 9947 9950 15287;15288 15288 -0.022181040170607957 FMSAAHARFRD 11 Unmodified _FMSAAHARFRD_ 0 0 0 REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156677246094 3 436.880384 1307.61932 NaN NaN NaN NaN NaN NaN NaN 121.03 1 116.34 115.84 116.84 -4.6873 0 0 0 0.23698 1 23233 23233 1.1098 0.14748 1 + 15196 24774 9947 9950 15289 15289 -0.022181040170607957 FMSAAHARFRD 11 Unmodified _FMSAAHARFRD_ 0 0 0 REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22369384765625 3 436.880384 1307.61932 0.02693 1.1765E-05 0.09316 4.07E-05 0.12009 5.2465E-05 437.21590710387113 99.411 0.61842 95.455 95.071 95.689 -3.9564 22 17 2 0 0 0 0.62806 1 19091 19091 0.026206 0 1 760010 + 15197 24774 9947 9950 15290 15290 -0.022181040170607957 FMSAAHARFRD 11 Unmodified _FMSAAHARFRD_ 0 0 0 REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.215087890625 3 436.880384 1307.61932 0.17616 7.6963E-05 -1.6948 -0.00074041 -1.5186 -0.00066344 436.8789927902559 120.81 0.17842 116.35 116.2 116.38 -4.467 5 4 2 0 0 0 0.79645 1 23258 23258 4.1166 1.6818 1 664380 + 15198 24774 9947 9950 15291 15291 -0.022181040170607957 FMSAAHARFRD 11 Unmodified _FMSAAHARFRD_ 0 0 0 REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21630859375 3 436.880384 1307.61932 0.2012 8.7902E-05 0.41961 0.00018332 0.62082 0.00027122 436.88000085511254 153.16 0.21521 147.94 147.82 148.04 -5.2209 6 5 2 0 0 0 0.78332 1 29685 29685 5.8681 2.0222 1 351870 + 15199 24774 9947 9950 15292 15292 -0.022181040170607957 FMSAAHARFRD 11 Unmodified _FMSAAHARFRD_ 0 0 0 REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant REV__TBCD|p.V924M|1|0.16|ENSG00000141556|chr17:82929189-82929189|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21490478515625 3 436.880384 1307.61932 NaN NaN NaN NaN NaN NaN NaN 154.95 1 149.7 149.2 150.2 -5.2526 0 0 0 0.23698 1 30045 30045 2.4348 0.34878 1 + 15200 24774 9947 9950 15293 15293 -0.022181040170607957 FMSGKAILHKL 11 Unmodified _FMSGKAILHKL_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;REV__SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.764404296875 2 622.862826 1243.7111 NaN NaN NaN NaN NaN NaN NaN 55.247 1 55.247 54.747 55.747 0 0 0 0 0.22632 1 10544 10544 0.00056442 0 1 + 15201 14106;24761;24760 9948 9951 15294 15294 0.09899186347433897 FMSITSSSP 9 Unmodified _FMSITSSSP_ 0 0 0 REV__TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant REV__TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73077392578125 2 478.723318 955.432083 0.32936 0.00015767 0.47238 0.00022614 0.80173 0.00038381 478.7234255228666 79.971 2.3781 79.971 79.132 81.51 0 120 67 2 0 0 0 0.28246 1 15400 15400 0.40827 0 1 3798900 + 15202 18782 9949 9952 15295 15295 -0.04741560345109974 FMSKIKKK 8 Unmodified _FMSKIKKK_ 0 0 0 REV__ENST00000585184.1_1_18:20837141-20837297:-|nuORF REV__ENST00000585184.1_1_18:20837141-20837297:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.21185302734375 3 337.212412 1008.61541 NaN NaN NaN NaN NaN NaN NaN 94.933 1 91.052 90.552 91.552 -3.881 0 0 0 0.21486 1 18215 18215 0.45834 0.057624 1 + 15203 23256 9950 9953 15296 15296 0.11144458227215637 FMSPVLRI 8 Unmodified _FMSPVLRI_ 0 0 0 UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7785339355469 2 481.778231 961.541908 NaN NaN NaN NaN NaN NaN NaN 143.13 1 138.11 137.61 138.61 -5.0261 0 0 0 0.23711 1 27593 27593 0.0082765 0 1 15204 26545 9951 9954 15297 15297 0.05959909784735373 FMTDQIEY 8 Unmodified _FMTDQIEY_ 0 0 0 REV__tr|U7SNT6|U7SNT6_FUSNUDNA-directedRNApolymerasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoAPE=3SV=1 REV__tr|U7SNT6|U7SNT6_FUSNUDNA-directedRNApolymerasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6870727539062 2 523.7286 1045.44265 NaN NaN NaN NaN NaN NaN NaN 157.83 1 153.04 152.54 153.54 -4.7885 0 0 0 0.23749 1 31389 31389 0.0082765 0 1 + 15205 24989 9952 9955 15298 15298 -0.07825577690687169 FMVSRMPFCQH 11 Unmodified _FMVSRMPFCQH_ 0 0 0 ENSG00000279270|ENST00000624978|OR52R1 ENSG00000279270|ENST00000624978|OR52R1 ENSG00000279270|ENST00000624978|OR52R1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.54315185546875 3 461.543727 1381.60935 NaN NaN NaN NaN NaN NaN NaN 61.842 1 58.603 58.103 59.103 -3.2395 0 0 0 0.23698 1 11582 11582 2.6312 0 1 15206 8048 9953 9956 15299 15299 -0.06618751338260154 FNAGEFLS 8 Unmodified _FNAGEFLS_ 0 0 0 REV__CRYBB1|p.K150N|1|0.33|ENSG00000100122|chr22:26602004-26602004|T/G|missense_variant REV__CRYBB1|p.K150N|1|0.33|ENSG00000100122|chr22:26602004-26602004|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 885.4181518554688 1 884.414859 883.407583 0.27674 0.00024475 0.0069875 6.1798E-06 0.28373 0.00025093 884.4148142085484 135.61 0.80731 130.97 130.62 131.43 -4.6399 49 22 3 0 0 0 0.66247 1 26793 26793 18.146 1.2041 1 13929000 + 15207 13587 9954 9957 15300 15300 -0.03878452436333646 FNCDENCE 8 Unmodified _FNCDENCE_ 0 0 0 REV__ENST00000441829.2_9:44302237-44303615:+|nuORF REV__ENST00000441829.2_9:44302237-44303615:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.10528564453125 3 325.10572 972.295332 NaN NaN NaN NaN NaN NaN NaN 177.94 1 177.94 177.44 178.44 0 0 0 0 0.21486 1 36865 36865 1.6526 0 1 + 15208 16567 9955 9958 15301 15301 -0.19192417567148823 FNCYNYNCCT 10 Unmodified _FNCYNYNCCT_ 0 0 0 REV__ENSG00000236027|ENST00000445202|PATE3 REV__ENSG00000236027|ENST00000445202|PATE3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7688598632812 2 622.712101 1243.40965 NaN NaN NaN NaN NaN NaN NaN 135.61 1 135.61 135.11 136.11 0 0 0 0 2.8426 1 26864 26864 0.13989 0 1 + 15209 19766 9956 9959 15302 15302 -0.20231851076687235 FNGGGGGG 8 Unmodified _FNGGGGGG_ 0 0 0 REV__nc|ENSG00000109534|Q9NY12-2|GAR1 REV__nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7669677734375 1 622.257965 621.250688 0.6822 0.00042451 0.15643 9.7342E-05 0.83864 0.00052185 622.2583658535866 164.97 0.1774 159.9 159.76 159.94 -5.0648 5 4 2 0 0 0 0.90013 1 32195 32195 0.30703 0.10017 1 4361000 + 15210 15165 9957 9960 15303 15303 -0.07508692535986938 FNHQLLFY 8 Unmodified _FNHQLLFY_ 0 0 0 REV__ENST00000358517.6_1_6:151162047-151162251:+|nuORF REV__ENST00000358517.6_1_6:151162047-151162251:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2630615234375 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 89.535 1 85.49 84.99 85.99 -4.0443 0 0 0 0.21486 1 17060 17060 10.183 0.83596 1 + 15211 20836 9958 9961 15304 15304 0.0022177765142714634 FNIFNYDY 8 Unmodified _FNIFNYDY_ 0 0 0 REV__ENSG00000136378|ENST00000388820|ADAMTS7 REV__ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7761840820312 2 548.242732 1094.47091 1 0.00054824 3.6673 0.0020105 4.6673 0.0025588 548.244550652199 23.439 0.4688 21.886 21.578 22.047 -1.5532 11 8 2 0 0 0 0.95515 1 4048 4048 21.747 6.9084 1 547490 + 15212 16326 9959 9962 15305 15305 -0.07254511719111179 FNKILTMER 9 Unmodified _FNKILTMER_ 0 0 0 ENST00000493756.1_1_1:40997452-41013129:+|nuORF;ENSG00000117010|ENST00000372699|ZNF684 ENST00000493756.1_1_1:40997452-41013129:+|nuORF ENST00000493756.1_1_1:40997452-41013129:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3155517578125 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 14.674 1 14.674 14.174 15.174 0 0 0 0 0.23508 1 2199 2199 11.64 0 1 15213 2970 9960 9963 15306 15306 0.047580475252971155 FNKIVRIL 8 Unmodified _FNKIVRIL_ 0 0 0 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.8443908691406 3 334.886805 1001.63859 NaN NaN NaN NaN NaN NaN NaN 18.865 1 18.865 18.365 19.365 0 0 0 0 0.2386 1 3058 3058 0.0082765 0 1 15214 5059 9961 9964 15307 15307 0.1378322033619952 FNKKWRRKMLY 11 Unmodified _FNKKWRRKMLY_ 0 0 0 REV__ENSG00000101306|ENST00000375985|MYLK2 REV__ENSG00000101306|ENST00000375985|MYLK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3961791992188 2 785.44538 1568.87621 NaN NaN NaN NaN NaN NaN NaN 119.35 1 119.35 118.85 119.85 0 0 0 0 0.23324 1 23514 23514 5.7319 2.9967 1 + 15215 14774 9962 9965 15308 15308 0.11452418207068149 FNKKWRRKMLY 11 Unmodified _FNKKWRRKMLY_ 0 0 0 REV__ENSG00000101306|ENST00000375985|MYLK2 REV__ENSG00000101306|ENST00000375985|MYLK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3976440429688 2 785.44538 1568.87621 NaN NaN NaN NaN NaN NaN NaN 124.91 1 120.31 119.81 120.81 -4.5984 0 0 0 0.23634 1 24629 24629 3.2813 2.088 1 + 15216 14774 9962 9965 15309 15309 0.11452418207068149 FNKKWRRKMLY 11 Unmodified _FNKKWRRKMLY_ 0 0 0 REV__ENSG00000101306|ENST00000375985|MYLK2 REV__ENSG00000101306|ENST00000375985|MYLK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3821411132812 2 785.44538 1568.87621 NaN NaN NaN NaN NaN NaN NaN 125.02 1 120.42 119.92 120.92 -4.5984 0 0 0 0.22632 1 24653 24653 0.00056442 0 1 + 15217 14774 9962 9965 15310 15310 0.11452418207068149 FNKKWRRKMLY 11 Unmodified _FNKKWRRKMLY_ 0 0 0 REV__ENSG00000101306|ENST00000375985|MYLK2 REV__ENSG00000101306|ENST00000375985|MYLK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.40478515625 2 785.44538 1568.87621 NaN NaN NaN NaN NaN NaN NaN 116.88 1 112.3 111.8 112.8 -4.5815 0 0 0 0.23698 1 22424 22424 0.30703 0.30703 1 + 15218 14774 9962 9965 15311 15311 0.11452418207068149 FNKKWRRKMLY 11 Unmodified _FNKKWRRKMLY_ 0 0 0 REV__ENSG00000101306|ENST00000375985|MYLK2 REV__ENSG00000101306|ENST00000375985|MYLK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4016723632812 2 785.44538 1568.87621 NaN NaN NaN NaN NaN NaN NaN 123.42 1 118.68 118.18 119.18 -4.731 0 0 0 0.2367 1 23708 23708 2.9952 0.26005 1 + 15219 14774 9962 9965 15312 15312 0.11452418207068149 FNLDNWFWFFW 11 Unmodified _FNLDNWFWFFW_ 0 0 0 REV__ENSG00000186908|ENST00000426126|ZDHHC17 REV__ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3687744140625 2 811.366787 1620.71902 NaN NaN NaN NaN NaN NaN NaN 153.77 1 153.77 153.27 154.27 0 0 0 0 0.23698 1 30813 30813 0.30703 0.03801 1 + 15220 19064 9963 9966 15313 15313 -0.06650963131482968 FNLDNWFWFFW 11 Unmodified _FNLDNWFWFFW_ 0 0 0 REV__ENSG00000186908|ENST00000426126|ZDHHC17 REV__ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2662963867188 3 541.24695 1620.71902 NaN NaN NaN NaN NaN NaN NaN 111.86 1 107.44 106.94 107.94 -4.4231 0 0 0 0.22632 1 22045 22045 0.094841 0 1 + 15221 19064 9963 9966 15314 15314 -0.06650963131482968 FNLDNWFWFFW 11 Unmodified _FNLDNWFWFFW_ 0 0 0 REV__ENSG00000186908|ENST00000426126|ZDHHC17 REV__ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.363525390625 2 811.366787 1620.71902 NaN NaN NaN NaN NaN NaN NaN 117.42 1 112.8 112.3 113.3 -4.6106 0 0 0 0.22632 1 22533 22533 0.0072825 0 1 + 15222 19064 9963 9966 15315 15315 -0.06650963131482968 FNLDNWFWFFW 11 Unmodified _FNLDNWFWFFW_ 0 0 0 REV__ENSG00000186908|ENST00000426126|ZDHHC17 REV__ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.36669921875 2 811.366787 1620.71902 NaN NaN NaN NaN NaN NaN NaN 48.833 1 45.827 45.327 46.327 -3.0068 0 0 0 0.23698 1 8943 8943 0.26902 0.26902 1 + 15223 19064 9963 9966 15316 15316 -0.06650963131482968 FNLKPGFTY 9 Unmodified _FNLKPGFTY_ 0 0 0 REV__ENST00000401424.5_1_11:13299386-13371514:+|nuORF REV__ENST00000401424.5_1_11:13299386-13371514:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7882690429688 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 115.57 1 111.1 110.6 111.6 -4.4726 0 0 0 0.19684 1 22784 22784 0.40827 0 1 + 15224 21195 9964 9967 15317 15317 0.015226444486188484 FNRKWYFKRER 11 Unmodified _FNRKWYFKRER_ 0 0 0 REV__ENST00000394507.5_2_7:91870378-91871424:-|nuORF REV__ENST00000394507.5_2_7:91870378-91871424:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3519897460938 2 815.441683 1628.86881 NaN NaN NaN NaN NaN NaN NaN 173.9 1 173.9 173.4 174.4 0 0 0 0 0.23698 1 35980 35980 0.26902 0.26902 1 + 15225 21246 9965 9968 15318 15318 0.07953401930990367 FNRKWYFKRER 11 Unmodified _FNRKWYFKRER_ 0 0 0 REV__ENST00000394507.5_2_7:91870378-91871424:-|nuORF REV__ENST00000394507.5_2_7:91870378-91871424:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7838134765625 3 543.963548 1628.86881 0.76347 0.0004153 1.199 0.00065219 1.9624 0.0010675 543.9643777225018 101.86 0.17838 101.86 101.74 101.92 0 6 4 2 0 0 0 0.89126 1 20011 20011 0.172 0.077159 1 2146200 + 15226 21246 9965 9968 15319 15319 0.07953401930990367 FNRLISTE 8 Unmodified _FNRLISTE_ 0 0 0 ENST00000592414.1_1_19:3052918-3053002:-|nuORF ENST00000592414.1_1_19:3052918-3053002:-|nuORF ENST00000592414.1_1_19:3052918-3053002:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26483154296875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 46.552 1 46.552 46.052 47.052 0 0 0 0 0.23487 1 8769 8769 3.5871 2.7421 1 15227 11635 9966 9969 15320 15320 0.02332883409144415 FNRPSDLPSNG 11 Unmodified _FNRPSDLPSNG_ 0 0 0 REV__MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant REV__MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2902221679688 2 602.291276 1202.568 NaN NaN NaN NaN NaN NaN NaN 82.625 1 78.927 78.427 79.427 -3.6985 0 0 0 0.22632 1 15760 15760 0.026206 0.022825 1 + 15228 14483 9967 9970 15321 15321 -0.025181495100923712 FNSKEKQYLH 10 Unmodified _FNSKEKQYLH_ 0 0 0 ENSG00000169992|ENST00000302926|NLGN2 ENSG00000169992|ENST00000302926|NLGN2 ENSG00000169992|ENST00000302926|NLGN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.89178466796875 3 431.891055 1292.65134 NaN NaN NaN NaN NaN NaN NaN 38.32 1 35.851 35.351 36.351 -2.4688 0 0 0 0.22588 1 7098 7098 2.086 0 1 15229 6029 9968 9971 15322 15322 0.01671586937777647 FNVTVSAHFG 10 Unmodified _FNVTVSAHFG_ 0 0 0 CD163L1|p.A1085V|1|0.17|ENSG00000177675|chr12:7374597-7374597|G/A|missense_variant CD163L1|p.A1085V|1|0.17|ENSG00000177675|chr12:7374597-7374597|G/A|missense_variant CD163L1|p.A1085V|1|0.17|ENSG00000177675|chr12:7374597-7374597|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2120666503906 3 360.182058 1077.52434 NaN NaN NaN NaN NaN NaN NaN 25.025 1 23.377 22.877 23.877 -1.6482 0 0 0 2.8426 1 4380 4380 0.84494 0.57955 1 15230 440 9969 9972 15323 15323 -0.011317142165808036 FNWAFEEYPPP 11 Unmodified _FNWAFEEYPPP_ 0 0 0 SIGLEC10|p.C173Y|1|0.11|ENSG00000142512|chr19:51416854-51416854|C/T|missense_variant SIGLEC10|p.C173Y|1|0.11|ENSG00000142512|chr19:51416854-51416854|C/T|missense_variant SIGLEC10|p.C173Y|1|0.11|ENSG00000142512|chr19:51416854-51416854|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 698.81494140625 2 698.814053 1395.61355 NaN NaN NaN NaN NaN NaN NaN 51.716 1 48.664 48.164 49.164 -3.0517 0 0 0 0.23698 1 9533 9533 1.4819 0 1 15231 25663 9970 9973 15324 15324 -0.06842924047714405 FNYNSKASI 9 Unmodified _FNYNSKASI_ 0 0 0 REV__ENST00000455094.1_1_6:30454046-30454364:+|nuORF REV__ENST00000455094.1_1_6:30454046-30454364:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2620239257812 2 522.261456 1042.50836 0.6486 0.00033874 -0.97085 -0.00050704 -0.32225 -0.0001683 522.2609599188614 79.504 0.86813 79.504 79.031 79.899 0 46 24 2 0 0 0 0.5059 1 15423 15423 19.257 1.1106 1 6833000 + 15232 16108 9971 9974 15325 15325 -0.011194204534831442 FNYNSKASI 9 Unmodified _FNYNSKASI_ 0 0 0 REV__ENST00000455094.1_1_6:30454046-30454364:+|nuORF REV__ENST00000455094.1_1_6:30454046-30454364:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.261474609375 2 522.261456 1042.50836 -0.2302 -0.00012022 0.054035 2.822E-05 -0.17616 -9.2002E-05 522.2615124794752 83.045 0.80602 79.438 79.027 79.833 -3.6079 43 22 2 0 0 0 0.44932 1 16193 16193 22.736 3.4793 1 3433700 + 15233 16108 9971 9974 15326 15326 -0.011194204534831442 FNYNSKASI 9 Unmodified _FNYNSKASI_ 0 0 0 REV__ENST00000455094.1_1_6:30454046-30454364:+|nuORF REV__ENST00000455094.1_1_6:30454046-30454364:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2614135742188 2 522.261456 1042.50836 -0.60117 -0.00031397 0.49993 0.0002611 -0.10124 -5.2873E-05 522.2617085125579 83.3 0.79724 79.426 78.916 79.713 -3.8736 42 22 2 0 0 0 0.44932 1 15788 15788 22.736 5.6234 1 3135800 + 15234 16108 9971 9974 15327 15327 -0.011194204534831442 FNYYLIFFF 9 Unmodified _FNYYLIFFF_ 0 0 0 ENSG00000132965|ENST00000380490|ALOX5AP ENSG00000132965|ENST00000380490|ALOX5AP ENSG00000132965|ENST00000380490|ALOX5AP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25177001953125 3 425.214587 1272.62193 NaN NaN NaN NaN NaN NaN NaN 155.12 1 149.86 149.36 150.36 -5.2526 0 0 0 0.19622 1 30078 30078 0.029283 0 1 15235 3774 9972 9975 15328 15328 -0.0034732534045360808 FPALKKPD 8 Unmodified _FPALKKPD_ 0 0 0 REV__NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant REV__NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2391662597656 2 458.268553 914.522553 NaN NaN NaN NaN NaN NaN NaN 157.64 1 152.85 152.35 153.35 -4.7885 0 0 0 0.21486 1 31352 31352 10.183 0.83596 1 + 15236 19251 9973 9976 15329 15329 0.06187276765456318 FPCWTQWPS 9 Unmodified _FPCWTQWPS_ 0 0 0 REV__ENST00000442692.2_1_11:68822646-68853210:+|nuORF REV__ENST00000442692.2_1_11:68822646-68853210:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3299560546875 2 576.252577 1150.4906 NaN NaN NaN NaN NaN NaN NaN 115.84 1 111.35 110.85 111.85 -4.486 0 0 0 0.23508 1 22837 22837 7.9102 0 1 + 15237 21722 9974 9977 15330 15330 -0.07862458979980147 FPDRYVLQG 9 Unmodified _FPDRYVLQG_ 0 0 0 ENST00000585274.1_1_17:79967368-79974654:+|nuORF;ENST00000578236.5_1_17:79966858-79974746:+|nuORF;ENST00000577733.5_1_17:79966858-79975195:+|nuORF;nc|ENSG00000169696|Q9BZE9-3|ASPSCR1;ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1 ENST00000585274.1_1_17:79967368-79974654:+|nuORF ENST00000585274.1_1_17:79967368-79974654:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.785400390625 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 84.372 1 84.372 83.872 84.872 0 0 0 0 0.19687 1 16455 16455 8.1555 5.5243 1 15238 6001 9975 9978 15331 15331 0.012608588174998658 FPEHLARFY 9 Unmodified _FPEHLARFY_ 0 0 0 LATS2|p.A773V|1|0.23|ENSG00000150457|chr13:20983388-20983388|G/A|missense_variant;ENSG00000150457|ENST00000382592|LATS2 LATS2|p.A773V|1|0.23|ENSG00000150457|chr13:20983388-20983388|G/A|missense_variant LATS2|p.A773V|1|0.23|ENSG00000150457|chr13:20983388-20983388|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2764892578125 2 590.300916 1178.58728 NaN NaN NaN NaN NaN NaN NaN 130.87 1 130.87 130.37 131.37 0 0 0 0 0.23508 1 25872 25872 8.5933 0.68312 1 15239 4825 9976 9979 15332 15332 0.005128515714659443 FPEKDGILY 9 Unmodified _FPEKDGILY_ 0 0 0 REV__tr|U7SUE4|U7SUE4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01395PE=4SV=1 REV__tr|U7SUE4|U7SUE4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01395PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2725830078125 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 99.587 1 95.631 95.131 96.131 -3.9564 0 0 0 0.23508 1 19122 19122 12.532 0.29089 1 + 15240 25161 9977 9980 15333 15333 0.012109208661513549 FPEKQSPDVS 10 Unmodified _FPEKQSPDVS_ 0 0 0 REV__ENSG00000153561|ENST00000283632|RMND5A REV__ENSG00000153561|ENST00000283632|RMND5A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 567.1033325195312 2 567.277303 1132.54005 NaN NaN NaN NaN NaN NaN NaN 55.171 1 52.036 51.536 52.536 -3.1352 0 0 0 0.22588 1 10191 10191 6.7232 0.51738 1 + 15241 17151 9978 9981 15334 15334 -0.020914724902013404 FPFQKPQLF 9 Unmodified _FPFQKPQLF_ 0 0 0 REV__ENSG00000068654|ENST00000263857|POLR1A REV__ENSG00000068654|ENST00000263857|POLR1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3180541992188 2 576.316035 1150.61752 NaN NaN NaN NaN NaN NaN NaN 98.136 1 94.038 93.538 94.538 -4.0982 0 0 0 0.19652 1 19270 19270 0.029283 0 1 + 15242 14230 9979 9982 15335 15335 0.04823210236668274 FPFSNRST 8 Unmodified _FPFSNRST_ 0 0 0 REV__ENSG00000113211|ENST00000231136|PCDHB6 REV__ENSG00000113211|ENST00000231136|PCDHB6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73583984375 2 478.235242 954.45593 0.028984 1.3861E-05 -0.11409 -5.4564E-05 -0.085111 -4.0703E-05 478.23519832400746 97.523 0.90379 93.603 93.091 93.994 -3.9194 41 25 2 0 0 0 8448 1 18695 18695 0.62683 0 1 2544900 + 15243 15328 9980 9983 15336 15336 -0.02311958796417457 FPFVASILQQ 10 Unmodified _FPFVASILQQ_ 0 0 0 REV__ENST00000418510.1_1_22:26043331-26044389:+|nuORF REV__ENST00000418510.1_1_22:26043331-26044389:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.322998046875 2 575.318774 1148.623 0.12461 7.1693E-05 0.8797 0.00050611 1.0043 0.0005778 575.3188731587771 125.16 0.78156 120.56 120.19 120.97 -4.5984 44 21 3 0 0 0 0.71097 1 24737 24737 10.074 2.7847 1 3941100 + 15244 21485 9981 9984 15337 15337 0.054628890284675435 FPFYRQNQQRW 11 Unmodified _FPFYRQNQQRW_ 0 0 0 nc|ENSG00000125798|Q9Y261|FOXA2;ENSG00000125798|ENST00000419308|FOXA2 nc|ENSG00000125798|Q9Y261|FOXA2 nc|ENSG00000125798|Q9Y261|FOXA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3917846679688 2 785.389116 1568.76368 NaN NaN NaN NaN NaN NaN NaN 122.47 1 122.47 121.97 122.97 0 0 0 0 0.23698 1 24141 24141 1.4819 0.15237 1 15245 3387 9982 9985 15338 15338 0.0020486073458414467 FPFYRQNQQRW 11 Unmodified _FPFYRQNQQRW_ 0 0 0 nc|ENSG00000125798|Q9Y261|FOXA2;ENSG00000125798|ENST00000419308|FOXA2 nc|ENSG00000125798|Q9Y261|FOXA2 nc|ENSG00000125798|Q9Y261|FOXA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4005737304688 2 785.389116 1568.76368 NaN NaN NaN NaN NaN NaN NaN 130.54 1 125.71 125.21 126.21 -4.8355 0 0 0 0.23698 1 25067 25067 1.4819 0.15237 1 15246 3387 9982 9985 15339 15339 0.0020486073458414467 FPFYRQNQQRW 11 Unmodified _FPFYRQNQQRW_ 0 0 0 nc|ENSG00000125798|Q9Y261|FOXA2;ENSG00000125798|ENST00000419308|FOXA2 nc|ENSG00000125798|Q9Y261|FOXA2 nc|ENSG00000125798|Q9Y261|FOXA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.388671875 2 785.389116 1568.76368 NaN NaN NaN NaN NaN NaN NaN 115.17 1 110.86 110.36 111.36 -4.3136 0 0 0 0.22632 1 22175 22175 0.172 0.17144 1 15247 3387 9982 9985 15340 15340 0.0020486073458414467 FPFYRQNQQRW 11 Unmodified _FPFYRQNQQRW_ 0 0 0 nc|ENSG00000125798|Q9Y261|FOXA2;ENSG00000125798|ENST00000419308|FOXA2 nc|ENSG00000125798|Q9Y261|FOXA2 nc|ENSG00000125798|Q9Y261|FOXA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3923950195312 2 785.389116 1568.76368 NaN NaN NaN NaN NaN NaN NaN 122.57 1 118.04 117.54 118.54 -4.5305 0 0 0 0.23698 1 23597 23597 1.4819 0.15237 1 15248 3387 9982 9985 15341 15341 0.0020486073458414467 FPFYRQNQQRW 11 Unmodified _FPFYRQNQQRW_ 0 0 0 nc|ENSG00000125798|Q9Y261|FOXA2;ENSG00000125798|ENST00000419308|FOXA2 nc|ENSG00000125798|Q9Y261|FOXA2 nc|ENSG00000125798|Q9Y261|FOXA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3859252929688 2 785.389116 1568.76368 NaN NaN NaN NaN NaN NaN NaN 131.9 1 127.11 126.61 127.61 -4.799 0 0 0 0.22632 1 25393 25393 0.03141 0.0052036 1 15249 3387 9982 9985 15342 15342 0.0020486073458414467 FPGALSLPGPH 11 Unmodified _FPGALSLPGPH_ 0 0 0 REV__ENST00000536411.1_1_12:6484889-6485174:-|nuORF REV__ENST00000536411.1_1_12:6484889-6485174:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.79052734375 2 546.795466 1091.57638 0.20732 0.00011336 3.9015 0.0021333 4.1089 0.0022467 546.7955782374713 136.29 0.21043 131.65 131.53 131.74 -4.6399 8 5 3 0 0 0 0.66829 1 26868 26868 13.906 2.2658 1 746920 + 15250 22816 9983 9986 15343 15343 0.034254491971978496 FPGALSLPGPH 11 Unmodified _FPGALSLPGPH_ 0 0 0 REV__ENST00000536411.1_1_12:6484889-6485174:-|nuORF REV__ENST00000536411.1_1_12:6484889-6485174:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.795466 1091.57638 0.3295 0.00018017 -1.8287 -0.00099991 -1.4992 -0.00081974 547.2933334730955 131.99 0.17427 131.99 131.85 132.03 0 0.17353 -0.0035247 NaN 13.906 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1086000 + 15251 22816 9983 9986 0.034254491971978496 FPGALSLPGPH 11 Unmodified _FPGALSLPGPH_ 0 0 0 REV__ENST00000536411.1_1_12:6484889-6485174:-|nuORF REV__ENST00000536411.1_1_12:6484889-6485174:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.795466 1091.57638 0.20732 0.00011336 3.9015 0.0021333 4.1089 0.0022467 546.7955782374713 136.29 0.21043 131.65 131.53 131.74 -4.6399 -0.17353 0.0027418 NaN 13.906 8 5 3 NaN NaN NaN NaN 0 NaN NaN 0 746920 + 15252 22816 9983 9986 0.034254491971978496 FPGCCMQCCC 10 Unmodified _FPGCCMQCCC_ 0 0 0 REV__nc|ENSG00000166448|Q8N3G9|TMEM130 REV__nc|ENSG00000166448|Q8N3G9|TMEM130 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7860717773438 2 547.656372 1093.29819 NaN NaN NaN NaN NaN NaN NaN 170.05 1 170.05 169.55 170.55 0 0 0 0 0.22588 1 34943 34943 0 0 1 + 15253 17851 9984 9987 15344 15344 -0.2447264830148015 FPGSASLET 9 Unmodified _FPGSASLET_ 0 0 0 REV__ENSG00000132963|ENST00000380842|POMP REV__ENSG00000132963|ENST00000380842|POMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.4107055664062 1 908.435989 907.428712 0.65246 0.00059272 -0.31421 -0.00028544 0.33826 0.00030728 908.4355970880921 115.69 0.87605 111.33 110.86 111.74 -4.3585 61 24 3 0 0 0 0.60805 1 22223 22223 12.532 0.89125 1 25909000 + 15254 16145 9985 9988 15345 15345 -0.02870487127472643 FPGSASLET 9 Unmodified _FPGSASLET_ 0 0 0 REV__ENSG00000132963|ENST00000380842|POMP REV__ENSG00000132963|ENST00000380842|POMP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 908.435989 907.428712 0.53618 0.00048708 -0.38433 -0.00034914 0.15185 0.00013795 908.4355282692947 111.25 0.83354 111.25 110.79 111.62 0 -0.031411 -0.00012045 NaN 12.532 58 23 4 NaN NaN NaN NaN 0 NaN NaN 0 22140000 + 15255 16145 9985 9988 -0.02870487127472643 FPGSASLET 9 Unmodified _FPGSASLET_ 0 0 0 REV__ENSG00000132963|ENST00000380842|POMP REV__ENSG00000132963|ENST00000380842|POMP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 908.435989 907.428712 0.49754 0.00045199 -0.29314 -0.0002663 0.2044 0.00018568 908.4355931119306 115.86 0.8242 111.28 110.91 111.73 -4.5815 -0.0042554 -3.7618E-05 NaN 12.532 55 23 3 NaN NaN NaN NaN 0 NaN NaN 0 21626000 + 15256 16145 9985 9988 -0.02870487127472643 FPGSASLET 9 Unmodified _FPGSASLET_ 0 0 0 REV__ENSG00000132963|ENST00000380842|POMP REV__ENSG00000132963|ENST00000380842|POMP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 908.435989 907.428712 0.65246 0.00059272 -0.31421 -0.00028544 0.33826 0.00030728 908.4355970880921 115.69 0.87605 111.33 110.86 111.74 -4.3585 0.049724 -5.6752E-05 NaN 12.532 61 24 3 NaN NaN NaN NaN 0 NaN NaN 0 25909000 + 15257 16145 9985 9988 -0.02870487127472643 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24847412109375 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 175.14 1 175.14 174.64 175.64 0 0 0 0 0.21486 1 36288 36288 0.79363 0 1 15258 1409 9986 9989 15346 15346 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2479553222656 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 175.63 1 175.63 175.13 176.13 0 0 0 0 0.21486 1 36384 36384 0.79363 0 1 15259 1409 9986 9989 15347 15347 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2491760253906 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 177.05 1 177.05 176.55 177.55 0 0 0 0 0.21486 1 36675 36675 0.79363 0 1 15260 1409 9986 9989 15348 15348 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2469787597656 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 176.01 1 171.22 170.72 171.72 -4.7898 0 0 0 0.21486 1 35986 35986 2.8892 0.58649 1 15261 1409 9986 9989 15349 15349 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2465515136719 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 176.23 1 171.44 170.94 171.94 -4.7898 0 0 0 0.21486 1 36033 36033 2.8892 0.58649 1 15262 1409 9986 9989 15350 15350 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.246826171875 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 175.83 1 170.95 170.45 171.45 -4.8739 0 0 0 0.21486 1 34966 34966 2.8892 0.58649 1 15263 1409 9986 9989 15351 15351 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2366027832031 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 176.18 1 171.3 170.8 171.8 -4.8739 0 0 0 0.21486 1 35040 35040 2.8892 0.58649 1 15264 1409 9986 9989 15352 15352 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24737548828125 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 176.28 1 171.41 170.91 171.91 -4.8739 0 0 0 0.21486 1 35065 35065 2.8892 0.58649 1 15265 1409 9986 9989 15353 15353 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2466125488281 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 176.53 1 171.66 171.16 172.16 -4.8739 0 0 0 0.21486 1 35117 35117 2.8892 0.31174 1 15266 1409 9986 9989 15354 15354 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2478332519531 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 175.24 1 170.35 169.85 170.85 -4.8916 0 0 0 0.21486 1 34926 34926 0.79363 0 1 15267 1409 9986 9989 15355 15355 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2472839355469 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 175.73 1 170.83 170.33 171.33 -4.9008 0 0 0 0.21486 1 35027 35027 2.8892 0 1 15268 1409 9986 9989 15356 15356 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2476501464844 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 175.97 1 171.07 170.57 171.57 -4.9008 0 0 0 0.21486 1 35077 35077 0.79363 0 1 15269 1409 9986 9989 15357 15357 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.246826171875 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 176.2 1 171.3 170.8 171.8 -4.9008 0 0 0 0.21486 1 35126 35126 2.8892 0.58649 1 15270 1409 9986 9989 15358 15358 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.23736572265625 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 176.35 1 171.45 170.95 171.95 -4.9008 0 0 0 0.21486 1 35159 35159 0.79363 0.10326 1 15271 1409 9986 9989 15359 15359 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24713134765625 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 176.41 1 171.51 171.01 172.01 -4.9008 0 0 0 0.21486 1 35172 35172 0.79363 0.10326 1 15272 1409 9986 9989 15360 15360 0.013587210769514968 FPGYPIHV 8 Unmodified _FPGYPIHV_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;STON1-GTF2A1L|p.A825T|1|0.06|ENSG00000068781|chr2:48645090-48645090|G/A|missense_variant;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2469482421875 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 177.2 1 172.3 171.8 172.8 -4.9008 0 0 0 0.21486 1 35337 35337 0.79363 0 1 15273 1409 9986 9989 15361 15361 0.013587210769514968 FPIACFRQV 9 Unmodified _FPIACFRQV_ 0 0 0 L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|98|1|anti-sense L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|98|1|anti-sense L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|98|1|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2749633789062 2 540.786587 1079.55862 0.42525 0.00022997 0.37321 0.00020183 0.79846 0.0004318 540.7866011769834 70.01 0.55799 66.543 66.289 66.847 -3.467 25 15 2 0 0 0 0.79204 1 13261 13261 7.2892 7.2892 1 2388600 15274 12052 9987 9990 15362 15362 0.022024106706794555 FPIYRYLD 8 Unmodified _FPIYRYLD_ 0 0 0 REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43 REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.781005859375 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 92.705 1 88.897 88.397 89.397 -3.8083 0 0 0 0.21452 1 17766 17766 13.508 0.46542 1 + 15275 13982 9988 9991 15363 15363 0.01522644448596111 FPKDKRQKAW 10 Unmodified _FPKDKRQKAW_ 0 0 0 nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B nc|ENSG00000165837|Q5W0A0-2|ERICH6B nc|ENSG00000165837|Q5W0A0-2|ERICH6B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 436.58380126953125 3 435.247173 1302.71969 -0.08944 -3.8929E-05 -0.90711 -0.00039482 -0.99655 -0.00043375 435.2467070354332 94.54 0.65869 94.54 94.175 94.834 0 56 18 4 0 0 0 0.52989 1 18527 18527 1.9064 1.8802 1 11636000 15276 5668 9989 9992 15364 15364 0.0804387630828387 FPKTSQKGS 9 Unmodified _FPKTSQKGS_ 0 0 0 REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2649230957031 2 490.263999 978.513445 0.064146 3.1448E-05 0.10466 5.1312E-05 0.16881 8.2761E-05 490.2640316435626 59.279 1.7152 56.368 55.784 57.5 -2.9105 129 48 4 0 0 0 0.45972 1 11588 11588 8.1555 1.9497 1 42586000 + 15277 17891 9990 9993 15365 15365 0.02332883409144415 FPKTSQKGS 9 Unmodified _FPKTSQKGS_ 0 0 0 REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2645263671875 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 0.45972 1 11313 11313 8.1555 6.4133 1 39769000 + 15278 17891 9990 9993 15366 15366 0.02332883409144415 FPKWIPQQP 9 Unmodified _FPKWIPQQP_ 0 0 0 REV__ENSG00000136560|ENST00000392749|TANK REV__ENSG00000136560|ENST00000392749|TANK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2125244140625 3 380.878198 1139.61277 -0.55139 -0.00021001 -0.064737 -2.4657E-05 -0.61613 -0.00023467 380.8781431820991 87.078 0.8767 83.349 82.872 83.749 -3.7289 54 24 3 0 0 0 0.5326 1 16698 16698 0.029283 0 1 5994300 + 15279 16341 9991 9994 15367 15367 0.04854326093891359 FPLLGSEHF 9 Unmodified _FPLLGSEHF_ 0 0 0 REV__SGCB|p.R109P|1|0.03|ENSG00000163069|chr4:52029781-52029781|C/G|missense_variant REV__SGCB|p.R109P|1|0.03|ENSG00000163069|chr4:52029781-52029781|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6910400390625 2 523.768917 1045.52328 NaN NaN NaN NaN NaN NaN NaN 149.56 1 144.44 143.94 144.94 -5.1204 0 0 0 0.21848 1 28980 28980 18.135 0 1 + 15280 24610 9992 9995 15368 15368 0.0023407141452480573 FPLPLLQY 8 Unmodified _FPLPLLQY_ 0 0 0 REV__ENST00000467237.5_1_7:150773814-150774197:-|nuORF REV__ENST00000467237.5_1_7:150773814-150774197:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.0096130371094 3 330.860145 989.558604 0.056069 1.8551E-05 -0.66376 -0.00021961 -0.60769 -0.00020106 330.8598382666323 53.347 0.70817 50.259 49.899 50.607 -3.0876 42 19 3 0 0 0 1.0262 1 9834 9834 1.8442 1.8442 1 3244100 + 15281 17720 9993 9996 15369 15369 0.06340733942317911 FPLWCIIFL 9 Unmodified _FPLWCIIFL_ 0 0 0 REV__nc|ENSG00000168398|P30411-2|BDKRB2 REV__nc|ENSG00000168398|P30411-2|BDKRB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3192749023438 2 576.319731 1150.62491 NaN NaN NaN NaN NaN NaN NaN 118.4 1 113.9 113.4 114.4 -4.502 0 0 0 0.23508 1 23346 23346 9.3474 0.60203 1 + 15282 18022 9994 9997 15370 15370 0.05562226512711277 FPMLTCSADP 10 Unmodified _FPMLTCSADP_ 0 0 0 REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1 REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2628173828125 2 541.238278 1080.462 0.39717 0.00021496 -1.0276 -0.0005562 -0.63047 -0.00034124 541.2377021082161 97.847 0.85799 97.847 97.437 98.295 0 60 24 3 0 0 0 0.57735 1 19100 19100 20.454 1.1966 1 13112000 + 15283 24188 9995 9998 15371 15371 -0.07500944671437537 FPNRSMSRA 9 Unmodified _FPNRSMSRA_ 0 0 0 REV__ENSG00000175866|ENST00000428708|BAIAP2 REV__ENSG00000175866|ENST00000428708|BAIAP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2844848632812 2 533.26655 1064.51855 NaN NaN NaN NaN NaN NaN NaN 145.69 1 140.58 140.08 141.08 -5.1108 0 0 0 0.23508 1 28162 28162 8.7454 0.15213 1 + 15284 18489 9996 9999 15372 15372 -0.011131359998671542 FPPCCWPI 8 Unmodified _FPPCCWPI_ 0 0 0 ENST00000262198.8_1_18:77894165-77894441:+|nuORF ENST00000262198.8_1_18:77894165-77894441:+|nuORF ENST00000262198.8_1_18:77894165-77894441:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24810791015625 2 481.716784 961.419016 0.45402 0.00021871 0.30952 0.0001491 0.76354 0.00036781 481.716885851906 117.9 0.67625 113.29 112.92 113.6 -4.6106 20 18 2 0 0 0 1.0035 1 22617 22617 2.8892 2.8892 1 1137900 15285 8309 9997 10000 15373 15373 -0.06323669938205967 FPPCHCCHC 9 Unmodified _FPPCHCCHC_ 0 0 0 REV__ENSG00000197191|ENST00000650725|CYSRT1 REV__ENSG00000197191|ENST00000650725|CYSRT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6761474609375 2 523.67681 1045.33907 NaN NaN NaN NaN NaN NaN NaN 151.23 1 146.06 145.56 146.56 -5.1759 0 0 0 0.23508 1 29318 29318 2.3027 2.3027 1 + 15286 19313 9998 10001 15374 15374 -0.1817880287535445 FPPLPVSLPV 10 Unmodified _FPPLPVSLPV_ 0 0 0 ENST00000395884.3_1_8:103665886-103666201:-|nuORF ENST00000395884.3_1_8:103665886-103666201:-|nuORF ENST00000395884.3_1_8:103665886-103666201:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2860107421875 2 533.320786 1064.62702 NaN NaN NaN NaN NaN NaN NaN 150.61 1 150.61 150.11 151.11 0 0 0 0 0.22515 1 30156 30156 23.148 3.8914 1 15287 9437 9999 10002 15375 15375 0.09728978522161924 FPPLRPWRAL 10 Unmodified _FPPLRPWRAL_ 0 0 0 ZNF581|p.C8Afs*105|1|0.43|ENSG00000171425|chr19:55644588-55644588|C/-|frameshift_variant ZNF581|p.C8Afs*105|1|0.43|ENSG00000171425|chr19:55644588-55644588|C/-|frameshift_variant ZNF581|p.C8Afs*105|1|0.43|ENSG00000171425|chr19:55644588-55644588|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 626.68994140625 2 626.8693 1251.72405 NaN NaN NaN NaN NaN NaN NaN 167.61 1 162.66 162.16 163.16 -4.948 0 0 0 2.8426 1 32989 32989 1.9064 1.641 1 15288 26630 10000 10003 15376 15376 0.108253855218436 FPQEPAQVK 9 Unmodified _FPQEPAQVK_ 0 0 0 REV__ZNF382|p.K462Nfs*83|1|0.22|ENSG00000161298|chr19:36627279-36627279|A/-|frameshift_variant REV__ZNF382|p.K462Nfs*83|1|0.22|ENSG00000161298|chr19:36627279-36627279|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2786254882812 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 15.83 1 14.614 14.114 15.114 -1.2159 0 0 0 0.23508 1 2461 2461 7.609 0.31972 1 + 15289 17454 10001 10004 15377 15377 0.025174564432290936 FPQSPLQNL 9 Unmodified _FPQSPLQNL_ 0 0 0 REV__nc|ENSG00000051009|Q8N612-2|FHIP1B REV__nc|ENSG00000051009|Q8N612-2|FHIP1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.278076171875 2 522.279649 1042.54475 -0.65796 -0.00034364 0.70625 0.00036886 0.048288 2.522E-05 522.2799642788542 107.4 0.90791 103.08 102.54 103.45 -4.32 43 25 2 0 0 0 0.6329 1 21061 21061 10.824 1.4408 1 3050500 + 15290 14086 10002 10005 15378 15378 0.025174564432290936 FPRAFRGSLT 10 Unmodified _FPRAFRGSLT_ 0 0 0 ENST00000155674.9_1_22:17618610-17618835:-|nuORF ENST00000155674.9_1_22:17618610-17618835:-|nuORF ENST00000155674.9_1_22:17618610-17618835:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3269653320312 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 128.15 1 123.52 123.02 124.02 -4.6292 0 0 0 0.22588 1 25268 25268 13.042 1.5478 1 15291 8074 10003 10006 15379 15379 0.055439428370846144 FPRKMRRRRRY 11 Unmodified _FPRKMRRRRRY_ 0 0 0 REV__ENSG00000183770|ENST00000648323|FOXL2 REV__ENSG00000183770|ENST00000648323|FOXL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3671875 2 811.475869 1620.93718 NaN NaN NaN NaN NaN NaN NaN 173.91 1 173.91 173.41 174.41 0 0 0 0 0.23698 1 35982 35982 0.30703 0.30703 1 + 15292 18861 10004 10007 15380 15380 0.15155368029900274 FPRKMRRRRRY 11 Unmodified _FPRKMRRRRRY_ 0 0 0 REV__ENSG00000183770|ENST00000648323|FOXL2 REV__ENSG00000183770|ENST00000648323|FOXL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2645263671875 3 541.319671 1620.93718 NaN NaN NaN NaN NaN NaN NaN 91.428 1 87.333 86.833 87.833 -4.0946 0 0 0 0.22632 1 17419 17419 0.026206 0.026206 1 + 15293 18861 10004 10007 15381 15381 0.15155368029900274 FPRPSPLD 8 Unmodified _FPRPSPLD_ 0 0 0 REV__ENSG00000205517|ENST00000380456|RGL3 REV__ENSG00000205517|ENST00000380456|RGL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2503356933594 2 464.747985 927.481417 0.27312 0.00012693 -2.6634 -0.0012378 -2.3903 -0.0011109 464.74553352787336 39.536 0.83239 39.536 39.166 39.998 0 49 23 3 0 0 0 8448 1 7417 7417 1.7423 0.28721 1 3642100 + 15294 19594 10005 10008 15382 15382 0.01477515725991907 FPRPSPLD 8 Unmodified _FPRPSPLD_ 0 0 0 REV__ENSG00000205517|ENST00000380456|RGL3 REV__ENSG00000205517|ENST00000380456|RGL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2497253417969 2 464.747985 927.481417 -0.21179 -9.843E-05 -2.4009 -0.0011158 -2.6127 -0.0012143 464.7458357699406 42.29 0.90665 39.571 38.933 39.84 -2.7191 54 25 3 0 0 0 8448 1 7962 7962 1.7423 0.28721 1 5552700 + 15295 19594 10005 10008 15383 15383 0.01477515725991907 FPRRALPA 8 Unmodified _FPRRALPA_ 0 0 0 chr16:2785646-2785799|281|11.53|0.22|5.74|-|ENST00000571674|PRSS33,PRSS33;ENSG00000103355|ENST00000682474|PRSS33;chr16:2784802-2785002|265|12.39|0.27|5.52|-|ENST00000570702|PRSS33,PRSS33 chr16:2785646-2785799|281|11.53|0.22|5.74|-|ENST00000571674|PRSS33,PRSS33 chr16:2785646-2785799|281|11.53|0.22|5.74|-|ENST00000571674|PRSS33,PRSS33 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1645202636719 3 309.855616 926.54502 0.53821 0.00016677 1.1662 0.00036135 1.7044 0.00052812 309.8558468642194 119.39 0.66782 114.74 114.32 114.99 -4.645 26 18 2 0 0 0 0.89646 1 22890 22890 0.12286 0 1 1219700 15296 541 10006 10009 15384 15384 0.07880920953732584 FPRRALPA 8 Unmodified _FPRRALPA_ 0 0 0 chr16:2785646-2785799|281|11.53|0.22|5.74|-|ENST00000571674|PRSS33,PRSS33;ENSG00000103355|ENST00000682474|PRSS33;chr16:2784802-2785002|265|12.39|0.27|5.52|-|ENST00000570702|PRSS33,PRSS33 chr16:2785646-2785799|281|11.53|0.22|5.74|-|ENST00000571674|PRSS33,PRSS33 chr16:2785646-2785799|281|11.53|0.22|5.74|-|ENST00000571674|PRSS33,PRSS33 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 309.855616 926.54502 0.013853 4.2925E-06 1.6494 0.00051108 1.6633 0.00051537 309.8560517426625 119.14 0.71252 114.64 114.22 114.93 -4.502 -0.069428 9.5606E-05 NaN 0.12286 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2346400 15297 541 10006 10009 0.07880920953732584 FPRRALPA 8 Unmodified _FPRRALPA_ 0 0 0 chr16:2785646-2785799|281|11.53|0.22|5.74|-|ENST00000571674|PRSS33,PRSS33;ENSG00000103355|ENST00000682474|PRSS33;chr16:2784802-2785002|265|12.39|0.27|5.52|-|ENST00000570702|PRSS33,PRSS33 chr16:2785646-2785799|281|11.53|0.22|5.74|-|ENST00000571674|PRSS33,PRSS33 chr16:2785646-2785799|281|11.53|0.22|5.74|-|ENST00000571674|PRSS33,PRSS33 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 309.855616 926.54502 -0.28319 -8.7747E-05 1.6777 0.00051983 1.3945 0.00043209 309.8560977471555 119.16 0.55946 114.75 114.49 115.05 -4.4088 0.036552 0.00012186 NaN 0.12286 17 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1054700 15298 541 10006 10009 0.07880920953732584 FPRRRRRRRRG 11 Unmodified _FPRRRRRRRRG_ 0 0 0 ENST00000222747.7_1_7:120497939-120498116:-|nuORF ENST00000222747.7_1_7:120497939-120498116:-|nuORF ENST00000222747.7_1_7:120497939-120498116:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6965942382812 3 523.661308 1567.96209 NaN NaN NaN NaN NaN NaN NaN 144.76 1 144.76 144.26 145.26 0 0 0 0 0.23698 1 28927 28927 1.4551 1.0006 1 15299 8138 10007 10010 15385 15385 0.20083183947440375 FPRRRRRRRRG 11 Unmodified _FPRRRRRRRRG_ 0 0 0 ENST00000222747.7_1_7:120497939-120498116:-|nuORF ENST00000222747.7_1_7:120497939-120498116:-|nuORF ENST00000222747.7_1_7:120497939-120498116:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3735961914062 2 784.988324 1567.96209 NaN NaN NaN NaN NaN NaN NaN 140.18 1 135.54 135.04 136.04 -4.6439 0 0 0 0.23698 1 27677 27677 0 0 1 15300 8138 10007 10010 15386 15386 0.20083183947440375 FPRRRRRRRRG 11 Unmodified _FPRRRRRRRRG_ 0 0 0 ENST00000222747.7_1_7:120497939-120498116:-|nuORF ENST00000222747.7_1_7:120497939-120498116:-|nuORF ENST00000222747.7_1_7:120497939-120498116:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3724975585938 2 784.988324 1567.96209 NaN NaN NaN NaN NaN NaN NaN 147.17 1 142.48 141.98 142.98 -4.6868 0 0 0 0.23698 1 29194 29194 0 0 1 15301 8138 10007 10010 15387 15387 0.20083183947440375 FPRRRRRRRRG 11 Unmodified _FPRRRRRRRRG_ 0 0 0 ENST00000222747.7_1_7:120497939-120498116:-|nuORF ENST00000222747.7_1_7:120497939-120498116:-|nuORF ENST00000222747.7_1_7:120497939-120498116:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6829833984375 3 523.661308 1567.96209 0.2994 0.00015679 4.1163 0.0021555 4.4157 0.0023123 523.6643445684995 138.6 0.28773 133.75 133.54 133.83 -4.8492 10 7 2 0 0 0 0.82662 1 26713 26713 0.094841 0.030435 1 2059900 15302 8138 10007 10010 15388 15388 0.20083183947440375 FPSEFSYTLL 10 Unmodified _FPSEFSYTLL_ 0 0 0 TECTA|p.D2032Gfs*22|1|0.13|ENSG00000109927|chr11:121187922-121187923|-/G|frameshift_variant;ENSG00000109927|ENST00000392793|TECTA TECTA|p.D2032Gfs*22|1|0.13|ENSG00000109927|chr11:121187922-121187923|-/G|frameshift_variant TECTA|p.D2032Gfs*22|1|0.13|ENSG00000109927|chr11:121187922-121187923|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3018188476562 2 602.300247 1202.58594 NaN NaN NaN NaN NaN NaN NaN 119.57 1 115.05 114.55 115.55 -4.5221 0 0 0 0.22535 1 23581 23581 20.454 2.3073 1 15303 2549 10008 10011 15389 15389 -0.007248273079312639 FPSGTLSSQVE 11 Unmodified _FPSGTLSSQVE_ 0 0 0 ENST00000468588.1_1_1:109779820-109780507:+|nuORF ENST00000468588.1_1_1:109779820-109780507:+|nuORF ENST00000468588.1_1_1:109779820-109780507:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.32080078125 2 576.282586 1150.55062 NaN NaN NaN NaN NaN NaN NaN 120.15 1 120.15 119.65 120.65 0 0 0 0 0.22862 1 23681 23681 9.3831 0.63772 1 15304 10170 10009 10012 15390 15390 -0.018634898357504426 FPTPDPAAL 9 Unmodified _FPTPDPAAL_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.165283203125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 125.93 1 121.33 120.83 121.83 -4.5984 0 0 0 0.19624 1 24827 24827 0.073264 0 1 15305 1969;724 10010 10013 15391 15391 0.003546936318457483 FPTPDPAAL 9 Unmodified _FPTPDPAAL_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 91.66 1 87.565 87.065 88.065 -4.0946 0 0 0 0.19624 1 17457 17457 0.073264 0 1 15306 1969;724 10010 10013 15392 15392 0.003546936318457483 FPTPDPAAL 9 Unmodified _FPTPDPAAL_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 130.64 1 125.8 125.3 126.3 -4.8355 0 0 0 0.19624 1 25084 25084 0.073264 0 1 15307 1969;724 10010 10013 15393 15393 0.003546936318457483 FPVGGRDRIY 10 Unmodified _FPVGGRDRIY_ 0 0 0 REV__ENST00000408887.3_1_12:62996462-62996639:-|nuORF REV__ENST00000408887.3_1_12:62996462-62996639:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.25048828125 2 590.317097 1178.61964 NaN NaN NaN NaN NaN NaN NaN 98.616 1 94.483 93.983 94.983 -4.1326 0 0 0 0.22588 1 19364 19364 6.7232 0.51738 1 + 15308 21397 10011 10014 15394 15394 0.0374763897448247 FPVISDFRN 9 Unmodified _FPVISDFRN_ 0 0 0 ENST00000554399.1_1_14:52907387-53019203:-|nuORF ENST00000554399.1_1_14:52907387-53019203:-|nuORF ENST00000554399.1_1_14:52907387-53019203:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7723999023438 2 547.785099 1093.55564 0.25788 0.00014126 -1.5605 -0.00085485 -1.3027 -0.00071358 547.783438519127 88.182 0.44977 84.432 84.189 84.639 -3.7501 18 12 2 0 0 0 0.55979 1 16886 16886 15.847 2.8047 1 972700 15309 11218 10012 10015 15395 15395 0.012608588175226032 FPVISDFRN 9 Unmodified _FPVISDFRN_ 0 0 0 ENST00000554399.1_1_14:52907387-53019203:-|nuORF ENST00000554399.1_1_14:52907387-53019203:-|nuORF ENST00000554399.1_1_14:52907387-53019203:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.785099 1093.55564 0.39202 0.00021474 -0.64648 -0.00035413 -0.25446 -0.00013939 548.2869120417243 88.483 0.51325 84.487 84.223 84.736 -3.9953 0.04969 0.00035383 NaN 15.847 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 939190 15310 11218 10012 10015 0.012608588175226032 FPVKPRRRHKY 11 Unmodified _FPVKPRRRHKY_ 0 0 0 REV__nc|ENSG00000121904|Q7Z408|CSMD2 REV__nc|ENSG00000121904|Q7Z408|CSMD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3760375976562 2 742.441486 1482.86842 NaN NaN NaN NaN NaN NaN NaN 133.58 1 133.58 133.08 134.08 0 0 0 0 0.22632 1 26428 26428 0.026206 0 1 + 15311 15669 10013 10016 15396 15396 0.14630027001817325 FPWPLYSMY 9 Unmodified _FPWPLYSMY_ 0 0 0 nc|ENSG00000130948|P37058-2|HSD17B3;ENST00000494814.5_1_9:99003185-99007692:-|nuORF;ENST00000464104.5_1_9:98997744-99012284:-|nuORF;ENSG00000130948|ENST00000375263|HSD17B3 nc|ENSG00000130948|P37058-2|HSD17B3 nc|ENSG00000130948|P37058-2|HSD17B3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.28271484375 2 602.280803 1202.54705 NaN NaN NaN NaN NaN NaN NaN 93.159 1 93.159 92.659 93.659 0 0 0 0 0.23411 1 18222 18222 13.508 2.684 1 15312 12322 10014 10017 15397 15397 -0.0461183114330197 FPYNQCSYE 9 Unmodified _FPYNQCSYE_ 0 0 0 ENSG00000188981|ENST00000438480|MSANTD1 ENSG00000188981|ENST00000438480|MSANTD1 ENSG00000188981|ENST00000438480|MSANTD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3167724609375 2 575.729132 1149.44371 0.28191 0.0001623 -0.2335 -0.00013443 0.048412 2.7872E-05 576.229153628441 116.32 0.20421 116.32 116.22 116.42 0 6 5 2 0 0 0 0.84208 1 22906 22906 3.9444 0.3479 1 737720 15313 7210 10015 10018 15398 15398 -0.12503363321798133 FPYPLVQV 8 Unmodified _FPYPLVQV_ 0 0 0 REV__ENSG00000253797|ENST00000521776|UTP14C REV__ENSG00000253797|ENST00000521776|UTP14C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7685241699219 2 481.770929 961.527304 NaN NaN NaN NaN NaN NaN NaN 81.594 1 78.037 77.537 78.537 -3.557 0 0 0 0.20568 1 15938 15938 20.871 1.6142 1 + 15314 19840 10016 10019 15399 15399 0.04500160908230555 FQAGDSPAEDD 11 Unmodified _FQAGDSPAEDD_ 0 0 0 REV__ENST00000468712.5_1_7:26766479-26894483:-|nuORF REV__ENST00000468712.5_1_7:26766479-26894483:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3336181640625 2 576.228007 1150.44146 0.076369 4.4006E-05 0.42826 0.00024677 0.50463 0.00029078 576.2282198030163 62.95 1.2332 59.989 59.5 60.733 -2.9614 86 35 3 0 0 0 0.5237 1 12121 12121 0.65807 0 1 3993900 + 15315 13850 10017 10020 15400 15400 -0.12774120525909893 FQDENHLYL 9 Unmodified _FQDENHLYL_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB;CDC42BPB|p.K338Sfs*8|1|0.36|ENSG00000198752|chr14:102980900-102980900|T/-|frameshift_variant;CDC42BPB|p.F342Lfs*4|1|0.26|ENSG00000198752|chr14:102980887-102980887|A/-|frameshift_variant;CDC42BPB|p.N918Tfs*5|1|0.27|ENSG00000198752|chr14:102963129-102963129|T/-|frameshift_variant;CDC42BPB|p.L928Ffs*26|1|0.05|ENSG00000198752|chr14:102963098-102963099|-/A|frameshift_variant;CDC42BPB|p.Q1073Rfs*38|2|0.31|ENSG00000198752|chr14:102950558-102950558|G/-|frameshift_variant ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2705078125 2 589.77747 1177.54039 0.2074 0.00012232 2.3893 0.0014091 2.5967 0.0015314 589.778736618532 110.06 0.37223 105.61 105.45 105.83 -4.4518 15 10 2 0 0 0 0.091344 1 21125 21125 76.825 32.418 1 1914900 15316 7485 10018 10021 15401 15401 -0.04128052770306567 FQDNLRHSY 9 Unmodified _FQDNLRHSY_ 0 0 0 ENST00000554736.5_1_14:52328042-52344361:+|nuORF ENST00000554736.5_1_14:52328042-52344361:+|nuORF ENST00000554736.5_1_14:52328042-52344361:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2486572265625 2 590.280712 1178.54687 NaN NaN NaN NaN NaN NaN NaN 105.92 1 101.66 101.16 102.16 -4.2638 0 0 0 0.070386 1 20850 20850 43.858 11.073 1 15317 11224 10019 10022 15402 15402 -0.03526114818964743 FQEQRKTE 8 Unmodified _FQEQRKTE_ 0 0 0 ENST00000521766.5_1_14:102695648-102699035:-|nuORF;nc|ENSG00000080823|Q9UQ07-5|MOK;nc|ENSG00000080823|Q9UQ07-6|MOK;ENSG00000080823|ENST00000361847|MOK ENST00000521766.5_1_14:102695648-102699035:-|nuORF ENST00000521766.5_1_14:102695648-102699035:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27099609375 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 39.913 1 39.913 39.413 40.413 0 0 0 0 0.23107 1 7416 7416 0.12286 0 1 15318 1619 10020 10023 15403 15403 -0.00460919567512974 FQEWRDRWYHY 11 Unmodified _FQEWRDRWYHY_ 0 0 0 REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3838500976562 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 82.473 1 82.473 81.973 82.973 0 0 0 0 0.23698 1 16068 16068 0.30703 0.30703 1 + 15319 16286 10021 10024 15404 15404 -0.06147746990632186 FQEWRDRWYHY 11 Unmodified _FQEWRDRWYHY_ 0 0 0 REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3870239257812 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 82.048 1 78.175 77.675 78.675 -3.8736 0 0 0 0.23698 1 15583 15583 0.30703 0.30703 1 + 15320 16286 10021 10024 15405 15405 -0.06147746990632186 FQEWRDRWYHY 11 Unmodified _FQEWRDRWYHY_ 0 0 0 REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3839721679688 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 146.46 1 141.35 140.85 141.85 -5.1108 0 0 0 0.23698 1 28324 28324 0.26902 0.26902 1 + 15321 16286 10021 10024 15406 15406 -0.06147746990632186 FQEWRDRWYHY 11 Unmodified _FQEWRDRWYHY_ 0 0 0 REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3843383789062 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 117.09 1 112.73 112.23 113.23 -4.3585 0 0 0 0.23698 1 22539 22539 0.35063 0.35063 1 + 15322 16286 10021 10024 15407 15407 -0.06147746990632186 FQFFKKRVRRW 11 Unmodified _FQFFKKRVRRW_ 0 0 0 ENSG00000118515|ENST00000367858|SGK1 ENSG00000118515|ENST00000367858|SGK1 ENSG00000118515|ENST00000367858|SGK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2805786132812 3 533.3124 1596.91537 NaN NaN NaN NaN NaN NaN NaN 159.03 1 153.75 153.25 154.25 -5.2748 0 0 0 0.22632 1 30867 30867 0.094841 0.068635 1 15323 3042 10022 10025 15408 15408 0.14078886552965741 FQFSDYRIQ 9 Unmodified _FQFSDYRIQ_ 0 0 0 ENSG00000119703|ENST00000524913|ZC2HC1C ENSG00000119703|ENST00000524913|ZC2HC1C ENSG00000119703|ENST00000524913|ZC2HC1C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2847900390625 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 106.44 1 102.35 101.85 102.85 -4.0913 0 0 0 0.19649 1 20470 20470 0.073264 0 1 15324 3095 10023 10026 15409 15409 -0.021160600163966592 FQHLQKEI 8 Unmodified _FQHLQKEI_ 0 0 0 MIS12|p.I147Lfs*10|1|0.35|ENSG00000167842|chr17:5489296-5489296|A/-|frameshift_variant;ENSG00000167842|ENST00000611091|MIS12 MIS12|p.I147Lfs*10|1|0.35|ENSG00000167842|chr17:5489296-5489296|A/-|frameshift_variant MIS12|p.I147Lfs*10|1|0.35|ENSG00000167842|chr17:5489296-5489296|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2776489257812 2 521.787641 1041.56073 0.31248 0.00016305 0.973 0.0005077 1.2855 0.00067075 521.788134727368 63.758 0.41244 60.501 60.157 60.57 -3.2567 16 11 2 0 0 0 0.81042 1 11965 11965 23.148 6.2061 1 884670 15325 5854 10024 10027 15410 15410 0.04161162680156849 FQKEKEELDRG 11 Unmodified _FQKEKEELDRG_ 0 0 0 ENST00000591248.5_1_19:10506000-10514173:-|nuORF;ENSG00000105401|ENST00000222005|CDC37 ENST00000591248.5_1_19:10506000-10514173:-|nuORF ENST00000591248.5_1_19:10506000-10514173:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2392272949219 3 460.236891 1377.68884 NaN NaN NaN NaN NaN NaN NaN 69.336 1 65.945 65.445 66.445 -3.3903 0 0 0 0.22632 1 13110 13110 0.026206 0 1 15326 2307 10025 10028 15411 15411 0.015106334126812726 FQKELSVL 8 Unmodified _FQKELSVL_ 0 0 0 ENST00000579008.1_1_18:8412788-8413139:+|nuORF ENST00000579008.1_1_18:8412788-8413139:+|nuORF ENST00000579008.1_1_18:8412788-8413139:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7804260253906 2 482.279118 962.543683 -0.11075 -5.3412E-05 -0.020646 -9.9573E-06 -0.1314 -6.337E-05 482.27916152905715 95.831 0.37473 91.95 91.785 92.159 -3.881 13 10 2 0 0 0 0.88974 1 18431 18431 0.25148 0.12366 1 711850 15327 11479 10026 10029 15412 15412 0.06091242074330694 FQKKRRNKIK 10 Unmodified _FQKKRRNKIK_ 0 0 0 INSL6|p.R205Kfs*7|1|0.42|ENSG00000120210|chr9:5163941-5163942|-/T|frameshift_variant;ENSG00000120210|ENST00000381641|INSL6 INSL6|p.R205Kfs*7|1|0.42|ENSG00000120210|chr9:5163941-5163942|-/T|frameshift_variant INSL6|p.R205Kfs*7|1|0.42|ENSG00000120210|chr9:5163941-5163942|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 673.4283447265625 2 673.430587 1344.84662 NaN NaN NaN NaN NaN NaN NaN 169.33 1 164.4 163.9 164.9 -4.9295 0 0 0 2.8426 1 33429 33429 0.043787 0 1 15328 3122 10027 10030 15413 15413 0.1879922225325572 FQLHCLTLFYF 11 Unmodified _FQLHCLTLFYF_ 0 0 0 ENST00000581193.5_1_18:3277909-3278131:+|nuORF ENST00000581193.5_1_18:3277909-3278131:+|nuORF ENST00000581193.5_1_18:3277909-3278131:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.26593017578125 3 477.90917 1430.70568 NaN NaN NaN NaN NaN NaN NaN 82.115 1 82.115 81.615 82.615 0 0 0 0 0.22632 1 15998 15998 3.0723 1.6171 1 15329 11503 10028 10031 15414 15414 0.007554627649597023 FQLRYTYLKLL 11 Unmodified _FQLRYTYLKLL_ 0 0 0 ENST00000342992.10_3_2:179400465-179400825:-|nuORF ENST00000342992.10_3_2:179400465-179400825:-|nuORF ENST00000342992.10_3_2:179400465-179400825:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 486.73492431640625 3 486.622017 1456.84422 NaN NaN NaN NaN NaN NaN NaN 131.6 1 126.8 126.3 127.3 -4.799 0 0 0 0.22632 1 25336 25336 0.026206 0 1 15330 8866 10029 10032 15415 15415 0.134073290049173 FQLWEPLF 8 Unmodified _FQLWEPLF_ 0 0 0 REV__ENST00000495676.5_1_1:154227274-154227361:+|nuORF REV__ENST00000495676.5_1_1:154227274-154227361:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.1882629394531 3 360.523532 1078.54877 -0.20844 -7.5148E-05 0.48821 0.00017601 0.27977 0.00010086 360.52464630570853 23.852 0.61472 23.852 23.552 24.167 0 39 17 3 0 0 0 8448 1 4091 4091 10.074 9.9511 1 539690 + 15331 22380 10030 10033 15416 15416 0.012635459369448654 FQQQKRRVYRR 11 Unmodified _FQQQKRRVYRR_ 0 0 0 ENSG00000119403|ENST00000373896|PHF19 ENSG00000119403|ENST00000373896|PHF19 ENSG00000119403|ENST00000373896|PHF19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2619018554688 3 522.302563 1563.88586 0.41193 0.00021515 2.3469 0.0012258 2.7589 0.001441 522.6387236400167 151.07 0.14487 145.89 145.78 145.93 -5.1759 5 3 2 0 0 0 0.6625 1 29262 29262 0.0059557 0 1 785290 15332 3076 10031 10034 15417 15417 0.12647322536827232 FQRLRDGDRF 10 Unmodified _FQRLRDGDRF_ 0 0 0 nc|ENSG00000147485|A1KZ92-2|PXDNL;PXDNL|p.T1359Qfs*25|1|0.33|ENSG00000147485|chr8:51339695-51339695|T/-|frameshift_variant;ENSG00000147485|ENST00000356297|PXDNL;nc|ENSG00000147485|A1KZ92-3|PXDNL nc|ENSG00000147485|A1KZ92-2|PXDNL nc|ENSG00000147485|A1KZ92-2|PXDNL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2308349609375 3 437.230182 1308.66872 NaN NaN NaN NaN NaN NaN NaN 109.65 1 109.65 109.15 110.15 0 0 0 0 2.8426 1 21559 21559 0.043787 0.042406 1 15333 4706 10032 10035 15418 15418 0.026729272633929213 FQRLRDGDRF 10 Unmodified _FQRLRDGDRF_ 0 0 0 nc|ENSG00000147485|A1KZ92-2|PXDNL;PXDNL|p.T1359Qfs*25|1|0.33|ENSG00000147485|chr8:51339695-51339695|T/-|frameshift_variant;ENSG00000147485|ENST00000356297|PXDNL;nc|ENSG00000147485|A1KZ92-3|PXDNL nc|ENSG00000147485|A1KZ92-2|PXDNL nc|ENSG00000147485|A1KZ92-2|PXDNL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.228759765625 3 437.230182 1308.66872 NaN NaN NaN NaN NaN NaN NaN 141.59 1 136.6 136.1 137.1 -4.9877 0 0 0 2.8426 1 27269 27269 0.043787 0.017581 1 15334 4706 10032 10035 15419 15419 0.026729272633929213 FQRWIRRNREK 11 Unmodified _FQRWIRRNREK_ 0 0 0 CATSPERB|p.Q1097R|1|0.1|ENSG00000133962|chr14:91580950-91580950|T/C|missense_variant CATSPERB|p.Q1097R|1|0.1|ENSG00000133962|chr14:91580950-91580950|T/C|missense_variant CATSPERB|p.Q1097R|1|0.1|ENSG00000133962|chr14:91580950-91580950|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 530.3093872070312 3 530.302563 1587.88586 NaN NaN NaN NaN NaN NaN NaN 166.01 1 161.03 160.53 161.53 -4.9811 0 0 0 0.22632 1 32498 32498 1.4551 0 1 15335 399 10033 10036 15420 15420 0.11543322536817868 FQSLHNGL 8 Unmodified _FQSLHNGL_ 0 0 0 CRADD|p.R185W|1|0.42|ENSG00000169372|chr12:93850224-93850224|C/T|missense_variant;ENSG00000169372|ENST00000332896|CRADD CRADD|p.R185W|1|0.42|ENSG00000169372|chr12:93850224-93850224|C/T|missense_variant CRADD|p.R185W|1|0.42|ENSG00000169372|chr12:93850224-93850224|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23895263671875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 100.68 1 96.693 96.193 97.193 -3.9895 0 0 0 0.21486 1 19346 19346 10.183 1.5901 1 15336 721 10034 10037 15421 15421 0.00036345066200738074 FQVQPRRY 8 Unmodified _FQVQPRRY_ 0 0 0 ENSG00000196547|ENST00000559717|MAN2A2 ENSG00000196547|ENST00000559717|MAN2A2 ENSG00000196547|ENST00000559717|MAN2A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7808227539062 2 547.298707 1092.58286 0.31512 0.00017246 1.069 0.00058504 1.3841 0.00075751 547.801839746229 152.26 0.14569 147.51 147.42 147.57 -4.7523 5 3 2 0 0 0 0.89276 1 30248 30248 0.62683 0.21856 1 762400 15337 7281 10035 10038 15422 15422 0.04027387148562411 FRAAPYRNA 9 Unmodified _FRAAPYRNA_ 0 0 0 REV__ENST00000535789.1_1_11:63438917-63439196:-|nuORF REV__ENST00000535789.1_1_11:63438917-63439196:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2793579101562 2 533.283057 1064.55156 -0.20034 -0.00010684 -0.38191 -0.00020366 -0.58225 -0.0003105 533.2827554338344 59.194 0.53768 59.194 59.004 59.541 0 25 14 2 0 0 0 0.45972 1 11308 11308 8.1555 6.4637 1 1800400 + 15338 22811 10036 10039 15423 15423 0.021868141144750552 FRAVFRLKS 9 Unmodified _FRAVFRLKS_ 0 0 0 ENST00000553891.5_1_14:73491257-73491332:-|nuORF ENST00000553891.5_1_14:73491257-73491332:-|nuORF ENST00000553891.5_1_14:73491257-73491332:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21221923828125 3 375.229342 1122.6662 NaN NaN NaN NaN NaN NaN NaN 13.16 1 13.16 12.66 13.66 0 0 0 0 0.1963 1 1882 1882 0 0 1 15339 11209 10037 10040 15424 15424 0.10977123596398997 FRDNNCDQPAE 11 Unmodified _FRDNNCDQPAE_ 0 0 0 REV__UNC80|p.E130D|1|0.19|ENSG00000144406|chr2:209777349-209777349|G/T|missense_variant REV__UNC80|p.E130D|1|0.19|ENSG00000144406|chr2:209777349-209777349|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2157897949219 3 436.847298 1307.52006 NaN NaN NaN NaN NaN NaN NaN 124.49 1 124.49 123.99 124.99 0 0 0 0 0.23057 1 24548 24548 7.846 1.6117 1 + 15340 25519 10038 10041 15425 15425 -0.121395914924733 FRDRVWDQFL 10 Unmodified _FRDRVWDQFL_ 0 0 0 REV__nc|ENSG00000108219|Q8NG11-2|TSPAN14 REV__nc|ENSG00000108219|Q8NG11-2|TSPAN14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.53106689453125 3 461.238566 1380.69387 NaN NaN NaN NaN NaN NaN NaN 141.1 1 136.23 135.73 136.73 -4.8678 0 0 0 2.8426 1 27225 27225 0.84494 0.25962 1 + 15341 15110 10039 10042 15426 15426 0.01874982065965014 FRDRWPGMFP 10 Unmodified _FRDRWPGMFP_ 0 0 0 ENST00000431361.1_1_20:61432323-61432428:-|nuORF ENST00000431361.1_1_20:61432323-61432428:-|nuORF ENST00000431361.1_1_20:61432323-61432428:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2160949707031 3 436.881725 1307.62335 0.21054 9.1982E-05 -3.7635 -0.0016442 -3.553 -0.0015522 436.8796385183495 154.28 0.13548 149.06 148.97 149.11 -5.2209 5 3 2 0 0 0 0.76269 1 29916 29916 1.7423 0.41263 1 587120 15342 9784 10040 10043 15427 15427 -0.01816014523319609 FRDSVDLLPLV 11 Unmodified _FRDSVDLLPLV_ 0 0 0 REV__ALK|p.R620Mfs*7|1|0.03|ENSG00000171094|chr2:29275455-29275456|-/A|frameshift_variant REV__ALK|p.R620Mfs*7|1|0.03|ENSG00000171094|chr2:29275455-29275456|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24530029296875 3 425.243206 1272.70779 NaN NaN NaN NaN NaN NaN NaN 89.83 1 86.052 85.552 86.552 -3.7779 0 0 0 0.22632 1 17190 17190 1.4551 1.3913 1 + 15343 13012 10041 10044 15428 15428 0.08234214774438442 FRDWPQREKRR 11 Unmodified _FRDWPQREKRR_ 0 0 0 REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1 REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 525.3436279296875 3 525.286802 1572.83858 -0.29388 -0.00015437 -0.5757 -0.00030241 -0.86958 -0.00045678 525.6192191390558 142.33 0.16898 137.3 137.24 137.41 -5.0261 5 4 2 0 0 0 0.89122 1 27450 27450 0.50596 0 1 818050 + 15344 24106 10042 10045 15429 15429 0.07507043265786706 FREEWRWTFSW 11 Unmodified _FREEWRWTFSW_ 0 0 0 REV__ENST00000606930.1_1_5:150891787-150892117:+|nuORF REV__ENST00000606930.1_1_5:150891787-150892117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3831787109375 2 815.3835 1628.75245 NaN NaN NaN NaN NaN NaN NaN 147.17 1 147.17 146.67 147.67 0 0 0 0 0.23698 1 29436 29436 0.30703 0 1 + 15345 23463 10043 10046 15430 15430 -0.036779613595399496 FREEWRWTFSW 11 Unmodified _FREEWRWTFSW_ 0 0 0 REV__ENST00000606930.1_1_5:150891787-150892117:+|nuORF REV__ENST00000606930.1_1_5:150891787-150892117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.381103515625 2 815.3835 1628.75245 NaN NaN NaN NaN NaN NaN NaN 150.21 1 145.48 144.98 145.98 -4.7323 0 0 0 0.23698 1 29832 29832 0.30703 0.03801 1 + 15346 23463 10043 10046 15431 15431 -0.036779613595399496 FREGMKVL 8 Unmodified _FREGMKVL_ 0 0 0 tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1 tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1 tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.273193359375 2 490.273312 978.532072 NaN NaN NaN NaN NaN NaN NaN 174.64 1 169.75 169.25 170.25 -4.8845 0 0 0 0.21486 1 34699 34699 2.3027 0 1 15347 26497 10044 10047 15432 15432 0.041947217793449454 FREGTSLGL 9 Unmodified _FREGTSLGL_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant;MUC16|p.S4774Ffs*12|1|0.01|ENSG00000181143|chr19:8962451-8962452|-/AC|frameshift_variant;MUC16|p.I2885Dfs*9|1|0.28|ENSG00000181143|chr19:8972486-8972487|-/C|frameshift_variant;MUC16|p.N2936Tfs*6|1|0.17|ENSG00000181143|chr19:8972332-8972332|T/-|frameshift_variant;MUC16|p.H3632Pfs*17|1|0.13|ENSG00000181143|chr19:8965875-8965876|-/G|frameshift_variant;MUC16|p.L2546Kfs*23|1|0.04|ENSG00000181143|chr19:8973503-8973504|-/CCTT|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2576904296875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 92.049 1 88.124 87.624 88.624 -3.9251 0 0 0 0.18489 1 18024 18024 4.477 0 1 15348 6711 10045 10048 15433 15433 0.023328834091330464 FREMYVRFFFR 11 Unmodified _FREMYVRFFFR_ 0 0 0 nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19;ENST00000502873.5_1_4:26585743-26755545:+|nuORF nc|ENSG00000109680|Q8N5T2-2|TBC1D19 nc|ENSG00000109680|Q8N5T2-2|TBC1D19 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2755737304688 3 533.274734 1596.80237 NaN NaN NaN NaN NaN NaN NaN 115.58 1 111 110.5 111.5 -4.5815 0 0 0 0.22632 1 22190 22190 1.4551 0.94916 1 15349 2537 10046 10049 15434 15434 0.02784450044737241 FRFPSSVRR 9 Unmodified _FRFPSSVRR_ 0 0 0 ZNF878|p.K197Nfs*16|1|0.41|ENSG00000257446|chr19:12044810-12044810|T/-|frameshift_variant;ZNF878|p.S238Lfs*5|4|0.16|ENSG00000257446|chr19:12044689-12044689|A/-|frameshift_variant;ENSG00000257446|ENST00000547628|ZNF878 ZNF878|p.K197Nfs*16|1|0.41|ENSG00000257446|chr19:12044810-12044810|T/-|frameshift_variant ZNF878|p.K197Nfs*16|1|0.41|ENSG00000257446|chr19:12044810-12044810|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3201293945312 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 120.52 1 115.88 115.38 116.38 -4.645 0 0 0 0.19643 1 23133 23133 0.12781 0 1 15350 7945 10047 10050 15435 15435 0.06666764931219404 FRGEALSSL 9 Unmodified _FRGEALSSL_ 0 0 0 nc|ENSG00000078319|A4D2B8|PMS2P1;ENST00000415839.2_1_7:6043319-6043421:-|nuORF;ENST00000380416.5_1_7:6042077-6048650:-|nuORF;nc|ENSG00000122512|P54278-4|PMS2;nc|ENSG00000078319|A4D2B8-3|PMS2P1;nc|ENSG00000078319|A4D2B8-2|PMS2P1;nc|ENSG00000122512|P54278-2|PMS2;nc|ENSG00000122512|P54278-3|PMS2;ENSG00000122512|ENST00000265849|PMS2 nc|ENSG00000078319|A4D2B8|PMS2P1 nc|ENSG00000078319|A4D2B8|PMS2P1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2646484375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.42 1 170.63 170.13 171.13 -4.7898 0 0 0 0.19652 1 35868 35868 0.073264 0 1 15351 12236 10048 10051 15436 15436 0.023328834091557837 FRGGPRGLLA 10 Unmodified _FRGGPRGLLA_ 0 0 0 ENST00000483409.1_1_6:7303794-7313353:-|nuORF;nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1 ENST00000483409.1_1_6:7303794-7313353:-|nuORF ENST00000483409.1_1_6:7303794-7313353:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2797241210938 2 522.309075 1042.6036 -0.0046029 -2.4042E-06 0.37656 0.00019668 0.37196 0.00019428 522.3090938818826 122.56 0.63148 118.01 117.71 118.34 -4.5476 40 17 3 0 0 0 0.59928 2 24142 24142;24170 19.257 7.6167 1 2693900 15352 3331 10049 10052 15437;15438 15437 0.08399977528256386 FRHKRKLLARL 11 Unmodified _FRHKRKLLARL_ 0 0 0 REV__ENST00000502574.1_1_15:65134152-65214443:+|nuORF REV__ENST00000502574.1_1_15:65134152-65214443:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013854980469 4 360.23739 1436.92046 -0.72172 -0.00025999 3.9385 0.0014188 3.2168 0.0011588 360.23853138480735 96.971 0.17128 93.052 92.919 93.091 -3.9194 6 4 2 0 0 0 0.96104 1 18606 18606 7.0371 0 1 576170 + 15353 19787 10050 10053 15439 15439 0.2194719041560802 FRIAEEVP 8 Unmodified _FRIAEEVP_ 0 0 0 REV__EHHADH|p.L406Cfs*35|1|0.46|ENSG00000113790|chr3:185193181-185193181|A/-|frameshift_variant REV__EHHADH|p.L406Cfs*35|1|0.46|ENSG00000113790|chr3:185193181-185193181|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2358703613281 2 480.761092 959.507631 -0.059854 -2.8776E-05 0.25882 0.00012443 0.19896 9.5653E-05 480.76116710716286 72.498 0.76095 72.498 72.089 72.85 0 55 21 3 0 0 0 0.2118 1 13996 13996 44.407 0.42517 1 41085000 + 15354 13792 10051 10054 15440 15440 0.02625784897475114 FRIAEEVP 8 Unmodified _FRIAEEVP_ 0 0 0 REV__EHHADH|p.L406Cfs*35|1|0.46|ENSG00000113790|chr3:185193181-185193181|A/-|frameshift_variant REV__EHHADH|p.L406Cfs*35|1|0.46|ENSG00000113790|chr3:185193181-185193181|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2455749511719 2 480.761092 959.507631 -0.011207 -5.3877E-06 0.31149 0.00014975 0.30028 0.00014436 480.7612743905078 75.85 0.95548 72.435 72.12 73.075 -3.4151 65 26 3 0 0 0 0.2118 1 14759 14759 44.407 3.6821 1 44592000 + 15355 13792 10051 10054 15441 15441 0.02625784897475114 FRKAINRT 8 Unmodified _FRKAINRT_ 0 0 0 PLS3|p.K100T|1|0.41|ENSG00000102024|chrX:115629259-115629259|A/C|missense_variant PLS3|p.K100T|1|0.41|ENSG00000102024|chrX:115629259-115629259|A/C|missense_variant PLS3|p.K100T|1|0.41|ENSG00000102024|chrX:115629259-115629259|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 503.3017883300781 2 503.30125 1004.58795 NaN NaN NaN NaN NaN NaN NaN 169.05 1 164.17 163.67 164.67 -4.873 0 0 0 0.21486 1 33371 33371 12.532 1.7076 1 15356 12805 10052 10055 15442 15442 0.08583691011165229 FRKRKKNKKQK 11 Unmodified _FRKRKKNKKQK_ 0 0 0 ENST00000392650.7_1_17:71334055-71334301:-|nuORF ENST00000392650.7_1_17:71334055-71334301:-|nuORF ENST00000392650.7_1_17:71334055-71334301:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 744.9854125976562 2 744.983518 1487.95248 NaN NaN NaN NaN NaN NaN NaN 175.19 1 170.31 169.81 170.81 -4.8845 0 0 0 0.22632 1 34835 34835 0.026206 0.025642 1 15357 9379 10053 10056 15443 15443 0.22802558098715053 FRKRKLLISL 10 Unmodified _FRKRKLLISL_ 0 0 0 ENST00000391974.3_1_1:198190099-198190180:+|nuORF ENST00000391974.3_1_1:198190099-198190180:+|nuORF ENST00000391974.3_1_1:198190099-198190180:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2474365234375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 33.491 1 33.491 32.991 33.991 0 0 0 0 2.8426 1 6115 6115 0 0 1 15358 9364 10054 10057 15444 15444 0.21390489652867473 FRKRKLLISL 10 Unmodified _FRKRKLLISL_ 0 0 0 ENST00000391974.3_1_1:198190099-198190180:+|nuORF ENST00000391974.3_1_1:198190099-198190180:+|nuORF ENST00000391974.3_1_1:198190099-198190180:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2408447265625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 40.299 1 40.299 39.799 40.799 0 0 0 0 2.8426 1 7495 7495 0 0 1 15359 9364 10054 10057 15445 15445 0.21390489652867473 FRKRKLLISL 10 Unmodified _FRKRKLLISL_ 0 0 0 ENST00000391974.3_1_1:198190099-198190180:+|nuORF ENST00000391974.3_1_1:198190099-198190180:+|nuORF ENST00000391974.3_1_1:198190099-198190180:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25250244140625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 115.78 1 115.78 115.28 116.28 0 0 0 0 0.22588 1 22789 22789 0.69767 0 1 15360 9364 10054 10057 15446 15446 0.21390489652867473 FRKRKLLISL 10 Unmodified _FRKRKLLISL_ 0 0 0 ENST00000391974.3_1_1:198190099-198190180:+|nuORF ENST00000391974.3_1_1:198190099-198190180:+|nuORF ENST00000391974.3_1_1:198190099-198190180:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2515563964844 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 35.656 1 33.379 32.879 33.879 -2.2766 0 0 0 2.8426 1 6273 6273 0 0 1 15361 9364 10054 10057 15447 15447 0.21390489652867473 FRKYVVEMFY 10 Unmodified _FRKYVVEMFY_ 0 0 0 nc|ENSG00000151490|Q16827-5|PTPRO;chr12:15595640-15596090|345|13.48|0.69|4.28|+|ENST00000674286|PTPRO,PTPRO;nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO nc|ENSG00000151490|Q16827-5|PTPRO nc|ENSG00000151490|Q16827-5|PTPRO MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5424499511719 3 461.237286 1380.69003 -0.11385 -5.251E-05 -0.70835 -0.00032672 -0.8222 -0.00037923 461.23689491925523 82.725 0.66061 79.027 78.728 79.389 -3.6985 35 18 3 0 0 0 0.75844 1 15820 15820 3.0723 0 1 1754700 15362 530 10055 10058 15448 15448 0.014911762479187018 FRLKKWIQK 9 Unmodified _FRLKKWIQK_ 0 0 0 ENSG00000180210|ENST00000311907|F2;CON__P00735 ENSG00000180210|ENST00000311907|F2;CON__P00735 CON__P00735 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 416.2643737792969 3 416.264276 1245.771 NaN NaN NaN NaN NaN NaN NaN 112.57 1 108.11 107.61 108.61 -4.4539 0 0 0 0.23508 1 22186 22186 0.23584 0 1 + 15363 648;6661 10056 10059 15449 15449 0.15794245072970625 FRLLRWWRRQL 11 Unmodified _FRLLRWWRRQL_ 0 0 0 ENST00000393313.5_1_7:127032353-127032743:-|nuORF ENST00000393313.5_1_7:127032353-127032743:-|nuORF ENST00000393313.5_1_7:127032353-127032743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3538208007812 2 815.483686 1628.95282 NaN NaN NaN NaN NaN NaN NaN 121.29 1 121.29 120.79 121.79 0 0 0 0 0.23698 1 23906 23906 0 0 1 15364 9390 10057 10060 15450 15450 0.16349977818595107 FRLLRWWRRQL 11 Unmodified _FRLLRWWRRQL_ 0 0 0 ENST00000393313.5_1_7:127032353-127032743:-|nuORF ENST00000393313.5_1_7:127032353-127032743:-|nuORF ENST00000393313.5_1_7:127032353-127032743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3461303710938 2 815.483686 1628.95282 NaN NaN NaN NaN NaN NaN NaN 165.8 1 165.8 165.3 166.3 0 0 0 0 0.23698 1 33689 33689 0 0 1 15365 9390 10057 10060 15451 15451 0.16349977818595107 FRLQGQPGY 9 Unmodified _FRLQGQPGY_ 0 0 0 ENSG00000248109|ENST00000638089|MARCOL ENSG00000248109|ENST00000638089|MARCOL ENSG00000248109|ENST00000638089|MARCOL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.277099609375 2 533.277441 1064.54033 0.16052 8.5603E-05 -2.1932 -0.0011696 -2.0326 -0.001084 533.2766696431308 73.713 0.94458 73.713 73.415 74.36 0 78 26 5 0 0 0 0.34815 1 14271 14271 2.6312 0 1 5584700 15366 7890 10058 10061 15452 15452 0.010639920203402653 FRMPELVDFR 10 Unmodified _FRMPELVDFR_ 0 0 0 ACSL1|p.V198Wfs*14|1|0.54|ENSG00000151726|chr4:184776649-184776650|-/AG|frameshift_variant;nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1 ACSL1|p.V198Wfs*14|1|0.54|ENSG00000151726|chr4:184776649-184776650|-/AG|frameshift_variant ACSL1|p.V198Wfs*14|1|0.54|ENSG00000151726|chr4:184776649-184776650|-/AG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2282409667969 3 437.228902 1308.66488 NaN NaN NaN NaN NaN NaN NaN 127.37 1 122.57 122.07 123.07 -4.7958 0 0 0 0.22588 1 24448 24448 11.518 2.5416 1 15367 39 10059 10062 15453 15453 0.022891214453238717 FRMPELVDFR 10 Unmodified _FRMPELVDFR_ 0 0 0 ACSL1|p.V198Wfs*14|1|0.54|ENSG00000151726|chr4:184776649-184776650|-/AG|frameshift_variant;nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1 ACSL1|p.V198Wfs*14|1|0.54|ENSG00000151726|chr4:184776649-184776650|-/AG|frameshift_variant ACSL1|p.V198Wfs*14|1|0.54|ENSG00000151726|chr4:184776649-184776650|-/AG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2287902832031 3 437.228902 1308.66488 NaN NaN NaN NaN NaN NaN NaN 128.48 1 123.66 123.16 124.16 -4.817 0 0 0 2.8426 1 24663 24663 0.84494 0 1 15368 39 10059 10062 15454 15454 0.022891214453238717 FRMPELVDFR 10 Unmodified _FRMPELVDFR_ 0 0 0 ACSL1|p.V198Wfs*14|1|0.54|ENSG00000151726|chr4:184776649-184776650|-/AG|frameshift_variant;nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1 ACSL1|p.V198Wfs*14|1|0.54|ENSG00000151726|chr4:184776649-184776650|-/AG|frameshift_variant ACSL1|p.V198Wfs*14|1|0.54|ENSG00000151726|chr4:184776649-184776650|-/AG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2290344238281 3 437.228902 1308.66488 NaN NaN NaN NaN NaN NaN NaN 148.35 1 143.19 142.69 143.69 -5.1557 0 0 0 0.22588 1 28718 28718 11.518 5.7344 1 15369 39 10059 10062 15455 15455 0.022891214453238717 FRMPELVDFR 10 Unmodified _FRMPELVDFR_ 0 0 0 ACSL1|p.V198Wfs*14|1|0.54|ENSG00000151726|chr4:184776649-184776650|-/AG|frameshift_variant;nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1 ACSL1|p.V198Wfs*14|1|0.54|ENSG00000151726|chr4:184776649-184776650|-/AG|frameshift_variant ACSL1|p.V198Wfs*14|1|0.54|ENSG00000151726|chr4:184776649-184776650|-/AG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2302551269531 3 437.228902 1308.66488 NaN NaN NaN NaN NaN NaN NaN 128.27 1 123.53 123.03 124.03 -4.7408 0 0 0 2.8426 1 24680 24680 0.84494 0.57955 1 15370 39 10059 10062 15456 15456 0.022891214453238717 FRNAEVKNAM 10 Unmodified _FRNAEVKNAM_ 0 0 0 OR4X1|p.G302Efs*3|1|0.18|ENSG00000176567|chr11:48264761-48264761|G/-|frameshift_variant;ENSG00000176567|ENST00000320048|OR4X1 OR4X1|p.G302Efs*3|1|0.18|ENSG00000176567|chr11:48264761-48264761|G/-|frameshift_variant OR4X1|p.G302Efs*3|1|0.18|ENSG00000176567|chr11:48264761-48264761|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2481079101562 2 590.30059 1178.58663 NaN NaN NaN NaN NaN NaN NaN 102.97 1 98.644 98.144 99.144 -4.3208 0 0 0 0.22588 1 19716 19716 10.074 0 1 15371 6475 10060 10063 15457 15457 0.004476888600947859 FRNRWKKSD 9 Unmodified _FRNRWKKSD_ 0 0 0 REV__ENSG00000136830|ENST00000373312|NIBAN2 REV__ENSG00000136830|ENST00000373312|NIBAN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.169921875 4 309.920361 1235.65234 -2.294 -0.00071096 -0.45575 -0.00014125 -2.7498 -0.00085221 309.9206943220964 7.542 1.5644 6.5272 5.4817 7.0461 -1.0148 58 44 2 0 0 0 0.83274 1 579 579 0.26902 0 1 60034 + 15372 16352 10061 10064 15458 15458 0.04393846097309506 FRNVGNPD 8 Unmodified _FRNVGNPD_ 0 0 0 REV__nc|ENSG00000147883|P42772-2|CDKN2B REV__nc|ENSG00000147883|P42772-2|CDKN2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2400207519531 2 459.725041 917.435529 -0.091521 -4.2075E-05 0.26338 0.00012108 0.17186 7.9009E-05 459.7251132541224 47.766 0.72743 44.816 44.568 45.295 -2.9499 36 20 2 0 0 0 0.72428 1 8694 8694 10.824 10.824 1 3143200 + 15373 16957 10062 10065 15459 15459 -0.026491294562333678 FRPDPNAG 8 Unmodified _FRPDPNAG_ 0 0 0 REV__nc|ENSG00000136352|P43699|NKX2-1 REV__nc|ENSG00000136352|P43699|NKX2-1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2145080566406 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 155.6 1 150.32 149.82 150.82 -5.2854 0 0 0 0.21486 1 30180 30180 2.5775 0 1 + 15374 16324 10063 10066 15460 15460 -0.027245144849530334 FRQASTLCR 9 Unmodified _FRQASTLCR_ 0 0 0 nc|ENSG00000128610|A0PJY2-2|FEZF1;FEZF2|p.S449Lfs*7|1|0.26|ENSG00000153266|chr3:62370118-62370119|-/G|frameshift_variant;ENSG00000153266|ENST00000283268|FEZF2;nc|ENSG00000128610|A0PJY2-3|FEZF1;ENSG00000128610|ENST00000442488|FEZF1 nc|ENSG00000128610|A0PJY2-2|FEZF1 nc|ENSG00000128610|A0PJY2-2|FEZF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2794189453125 2 541.2822 1080.54985 NaN NaN NaN NaN NaN NaN NaN 139.18 1 139.18 138.68 139.68 0 0 0 0 0.19636 1 27657 27657 2.4985 2.4951 1 15375 3535 10064 10067 15461 15461 0.012794370342135153 FRQRQPLRV 9 Unmodified _FRQRQPLRV_ 0 0 0 ENSG00000175893|ENST00000380916|ZDHHC21 ENSG00000175893|ENST00000380916|ZDHHC21 ENSG00000175893|ENST00000380916|ZDHHC21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.5619812011719 3 400.575513 1198.70471 -0.84772 -0.00033958 0.85511 0.00034254 0.0073887 2.9597E-06 400.5757977704747 12.86 0.23816 11.85 11.764 12.002 -1.0098 16 6 3 0 0 0 0.64764 1 1806 1806 0.96228 0.96089 1 3559800 15376 6439 10065 10068 15462 15462 0.1133042923092944 FRQRQPLRV 9 Unmodified _FRQRQPLRV_ 0 0 0 ENSG00000175893|ENST00000380916|ZDHHC21 ENSG00000175893|ENST00000380916|ZDHHC21 ENSG00000175893|ENST00000380916|ZDHHC21 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 400.575513 1198.70471 -0.68789 -0.00027555 0.66641 0.00026695 -0.021481 -8.6049E-06 400.57581026786477 12.919 0.24616 11.79 11.7 11.947 -1.1293 -0.030127 -0.00011275 NaN 0.96228 12 6 3 NaN NaN NaN NaN 0 NaN NaN 0 2416800 15377 6439 10065 10068 0.1133042923092944 FRQWKQKKYKE 11 Unmodified _FRQWKQKKYKE_ 0 0 0 KIF4B|p.D669Y|1|0.07|ENSG00000226650|chr5:155015864-155015864|G/T|missense_variant KIF4B|p.D669Y|1|0.07|ENSG00000226650|chr5:155015864-155015864|G/T|missense_variant KIF4B|p.D669Y|1|0.07|ENSG00000226650|chr5:155015864-155015864|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6810302734375 3 523.628054 1567.86233 NaN NaN NaN NaN NaN NaN NaN 126.43 1 121.81 121.31 122.31 -4.6172 0 0 0 0.23698 1 24927 24927 1.1098 0.74308 1 15378 12002 10066 10069 15463 15463 0.10111463979660584 FRRKEFSSHFK 11 Unmodified _FRRKEFSSHFK_ 0 0 0 ENSG00000118496|ENST00000237281|FBXO30 ENSG00000118496|ENST00000237281|FBXO30 ENSG00000118496|ENST00000237281|FBXO30 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2662353515625 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 73.774 1 70.18 69.68 70.68 -3.594 0 0 0 0.22632 1 14004 14004 3.0723 0.34026 1 15379 3038 10067 10070 15464 15464 0.05834048739961872 FRRLDRRWFAF 11 Unmodified _FRRLDRRWFAF_ 0 0 0 REV__ENST00000505007.5_1_5:138941007-138941097:+|nuORF REV__ENST00000505007.5_1_5:138941007-138941097:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.37255859375 2 785.431119 1568.84768 NaN NaN NaN NaN NaN NaN NaN 177.89 1 173.1 172.6 173.6 -4.7898 0 0 0 0.23698 1 36390 36390 2.4985 1.3051 1 + 15380 22473 10068 10071 15465 15465 0.08601436622166148 FRRVKTLLIK 10 Unmodified _FRRVKTLLIK_ 0 0 0 SLC25A41|p.Q34Nfs*44|2|0.3|ENSG00000181240|chr19:6433594-6433594|G/-|frameshift_variant;nc|ENSG00000181240|Q8N5S1-2|SLC25A41;ENSG00000181240|ENST00000321510|SLC25A41 SLC25A41|p.Q34Nfs*44|2|0.3|ENSG00000181240|chr19:6433594-6433594|G/-|frameshift_variant SLC25A41|p.Q34Nfs*44|2|0.3|ENSG00000181240|chr19:6433594-6433594|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24249267578125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 127.57 1 122.95 122.45 123.45 -4.6172 0 0 0 2.8426 1 25156 25156 0.0013812 0.0008168 1 15381 6717 10069 10072 15466 15466 0.21390489652844735 FRRWRQRRRRG 11 Unmodified _FRRWRQRRRRG_ 0 0 0 REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3555297851562 2 815.480331 1628.94611 NaN NaN NaN NaN NaN NaN NaN 123.38 1 118.79 118.29 119.29 -4.5926 0 0 0 0.23698 1 23751 23751 1.1933 1.1933 1 + 15382 22676 10070 10073 15467 15467 0.15679477710546053 FRSDSHGL 8 Unmodified _FRSDSHGL_ 0 0 0 SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2 SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.22637939453125 2 459.725041 917.435529 0.51668 0.00023753 -0.3816 -0.00017543 0.13508 6.21E-05 459.7248691124994 44.62 0.94499 44.62 44.254 45.199 0 52 26 3 0 0 0 0.71273 2 8420 8420;8427 12.532 3.9383 1 5066000 15383 7981 10071 10074 15468;15469 15468 -0.02649129456221999 FRSDSHGL 8 Unmodified _FRSDSHGL_ 0 0 0 SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2 SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2266845703125 2 459.725041 917.435529 -0.091521 -4.2075E-05 0.26338 0.00012108 0.17186 7.9009E-05 459.7251132541224 47.766 0.72743 44.816 44.568 45.295 -2.9499 36 20 2 0 0 0 0.71273 1 8706 8706 12.532 1.7076 1 3143200 15384 7981 10071 10074 15470 15470 -0.02649129456221999 FRVGFLTA 8 Unmodified _FRVGFLTA_ 0 0 0 ENST00000338008.9_1_5:79732623-79732692:+|nuORF ENST00000338008.9_1_5:79732623-79732692:+|nuORF ENST00000338008.9_1_5:79732623-79732692:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.0257263183594 3 304.176356 909.507237 NaN NaN NaN NaN NaN NaN NaN 46.987 1 44.045 43.545 44.545 -2.9421 0 0 0 0.21486 1 8554 8554 3.5965 0.8613 1 15385 8824 10072 10075 15471 15471 0.048864099682646156 FRVGFLTA 8 Unmodified _FRVGFLTA_ 0 0 0 ENST00000338008.9_1_5:79732623-79732692:+|nuORF ENST00000338008.9_1_5:79732623-79732692:+|nuORF ENST00000338008.9_1_5:79732623-79732692:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.02490234375 3 304.176356 909.507237 NaN NaN NaN NaN NaN NaN NaN 52.608 1 49.521 49.021 50.021 -3.0876 0 0 0 0.21486 1 9676 9676 3.5965 0.8613 1 15386 8824 10072 10075 15472 15472 0.048864099682646156 FRVGFLTA 8 Unmodified _FRVGFLTA_ 0 0 0 ENST00000338008.9_1_5:79732623-79732692:+|nuORF ENST00000338008.9_1_5:79732623-79732692:+|nuORF ENST00000338008.9_1_5:79732623-79732692:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.1239013671875 3 304.176356 909.507237 NaN NaN NaN NaN NaN NaN NaN 157.65 1 152.37 151.87 152.87 -5.2712 0 0 0 0.23626 1 30580 30580 0.12286 0.049601 1 15387 8824 10072 10075 15473 15473 0.048864099682646156 FRVVKLNEVIR 11 Unmodified _FRVVKLNEVIR_ 0 0 0 ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000168710|O43865-2|AHCYL1;ENST00000481423.1_1_1:110560194-110562192:+|nuORF ENSG00000168710|ENST00000369799|AHCYL1 ENSG00000168710|ENST00000369799|AHCYL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22723388671875 3 458.285628 1371.83505 NaN NaN NaN NaN NaN NaN NaN 63.245 1 59.829 59.329 60.329 -3.4158 0 0 0 0.22632 1 11812 11812 0.50596 0 1 15388 5928 10073 10076 15474 15474 0.16400980439266277 FRWKYHQFRFL 11 Unmodified _FRWKYHQFRFL_ 0 0 0 ENST00000568818.1_1_16:69964069-69965708:+|nuORF;nc|ENSG00000198373|O00308-3|WWP2;nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2 ENST00000568818.1_1_16:69964069-69965708:+|nuORF ENST00000568818.1_1_16:69964069-69965708:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79443359375 3 543.293005 1626.85719 0.34189 0.00018574 -0.5541 -0.00030104 -0.21221 -0.00011529 543.6270334892754 154.17 0.1055 154.17 154.11 154.22 0 4 2 2 0 0 0 0.96218 1 30902 30902 1.2148 0.76031 1 2593600 15389 7446 10074 10077 15475 15475 0.06883204907649088 FRWLARDLVWA 11 Unmodified _FRWLARDLVWA_ 0 0 0 REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7398376464844 3 478.266456 1431.77754 -0.014183 -6.7831E-06 -0.82456 -0.00039436 -0.83875 -0.00040114 478.26603656331656 92.463 0.59361 88.538 88.267 88.861 -3.9251 43 16 3 0 0 0 0.89021 1 18102 18102 0.172 0 1 6263900 + 15390 12980 10075 10078 15476 15476 0.07892138233682999 FRWLFVWLCAK 11 Unmodified _FRWLFVWLCAK_ 0 0 0 REV__PEX2|p.S90Pfs*4|1|0.34|ENSG00000164751|chr8:76983911-76983911|A/-|frameshift_variant REV__PEX2|p.S90Pfs*4|1|0.34|ENSG00000164751|chr8:76983911-76983911|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26800537109375 3 490.268921 1467.78493 NaN NaN NaN NaN NaN NaN NaN 128.1 1 128.1 127.6 128.6 0 0 0 0 0.22632 1 25297 25297 0.172 0 1 + 15391 17707 10076 10079 15477 15477 0.069751545097688 FRWMRLRIRRM 11 Unmodified _FRWMRLRIRRM_ 0 0 0 MGAT5|p.K403Nfs*4|1|0.39|ENSG00000152127|chr2:134349898-134349898|A/-|frameshift_variant;ENSG00000152127|ENST00000281923|MGAT5 MGAT5|p.K403Nfs*4|1|0.39|ENSG00000152127|chr2:134349898-134349898|A/-|frameshift_variant MGAT5|p.K403Nfs*4|1|0.39|ENSG00000152127|chr2:134349898-134349898|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2741088867188 3 540.978258 1619.91294 0.23353 0.00012633 3.8508 0.0020832 4.0844 0.0022095 541.3132447639905 138.76 0.18286 134.12 134.05 134.23 -4.6439 5 4 2 0 0 0 0.89092 1 27412 27412 0.172 0.14059 1 1203100 15392 4903 10077 10080 15478 15478 0.1277839155197853 FRWQRRRHSRH 11 Unmodified _FRWQRRRHSRH_ 0 0 0 REV__ENST00000552421.5_1_14:75230214-75230343:+|nuORF REV__ENST00000552421.5_1_14:75230214-75230343:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2744750976562 3 541.298035 1620.87228 NaN NaN NaN NaN NaN NaN NaN 163.83 1 158.76 158.26 159.26 -5.0648 0 0 0 0.22632 1 31903 31903 0.00056442 0 1 + 15393 22946 10078 10081 15479 15479 0.08667509548263297 FRWWRRRWNPR 11 Unmodified _FRWWRRRWNPR_ 0 0 0 ENST00000463462.5_1_7:148982563-148988696:+|nuORF;ENST00000426347.5_1_7:148982610-148985528:+|nuORF;ENST00000481817.5_1_7:148984700-148990670:+|nuORF ENST00000463462.5_1_7:148982563-148988696:+|nuORF ENST00000463462.5_1_7:148982563-148988696:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 572.3141479492188 3 572.646664 1714.91816 0.50057 0.00028665 2.5509 0.0014608 3.0515 0.0017474 572.6477619336722 165.45 0.099609 160.51 160.43 160.53 -4.9484 4 2 2 0 0 0 0.96228 1 32327 32327 0 0 1 9192600 15394 9724 10079 10082 15480 15480 0.08930154730501272 FRYFKAFTKEF 11 Unmodified _FRYFKAFTKEF_ 0 0 0 ENSG00000165661|ENST00000358701|QSOX2;QSOX2|p.K295Nfs*56|1|0.33|ENSG00000165661|chr9:136219101-136219101|T/-|frameshift_variant ENSG00000165661|ENST00000358701|QSOX2 ENSG00000165661|ENST00000358701|QSOX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3894653320312 2 742.390262 1482.76597 NaN NaN NaN NaN NaN NaN NaN 146.46 1 141.77 141.27 142.27 -4.6868 0 0 0 0.22632 1 29048 29048 0.026206 0 1 15395 5649 10080 10083 15481 15481 0.04389896419661454 FRYWYLFVLKC 11 Unmodified _FRYWYLFVLKC_ 0 0 0 ENST00000526600.1_1_11:12965683-12965947:+|nuORF ENST00000526600.1_1_11:12965683-12965947:+|nuORF ENST00000526600.1_1_11:12965683-12965947:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 513.266845703125 3 513.272331 1536.79516 -0.030496 -1.5653E-05 -1.6169 -0.00082993 -1.6474 -0.00084558 513.2711226282634 126.07 0.52426 121.47 121.19 121.71 -4.5984 31 14 3 0 0 0 0.89002 1 24822 24822 0.0059557 0 1 2635900 15396 10915 10081 10084 15482 15482 0.04823717444310205 FSACCCCC 8 Unmodified _FSACCCCC_ 0 0 0 ENST00000238892.3_1_2:46844356-46844401:+|nuORF ENST00000238892.3_1_2:46844356-46844401:+|nuORF ENST00000238892.3_1_2:46844356-46844401:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4816284179688 1 839.20132 838.194043 0.6481 0.00054388 -0.66617 -0.00055905 -0.018072 -1.5166E-05 839.2032536197946 164.24 0.099457 159.18 159.11 159.2 -5.0648 4 2 2 0 0 0 0.89856 2 32015 32011;32015 0 0 1 7917900 15397 8175 10082 10085 15483;15484 15484 -0.23152607066708697 FSAEFDEVPY 10 Unmodified _FSAEFDEVPY_ 0 0 0 REV__FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant REV__FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2958374023438 2 602.263862 1202.51317 NaN NaN NaN NaN NaN NaN NaN 118.85 1 114.44 113.94 114.94 -4.4088 0 0 0 2.8426 1 22872 22872 3.8763 0 1 + 15398 14332 10083 10086 15485 15485 -0.07998581101378477 FSAGRNVKA 9 Unmodified _FSAGRNVKA_ 0 0 0 REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1793518066406 3 317.178648 948.514114 NaN NaN NaN NaN NaN NaN NaN 122.41 1 117.88 117.38 118.38 -4.5305 0 0 0 0.23508 1 23566 23566 2.4985 0.84587 1 + 15399 16557 10084 10087 15486 15486 0.03779722848844358 FSARRPPP 8 Unmodified _FSARRPPP_ 0 0 0 REV__ENST00000300441.8_1_17:48538681-48539000:+|nuORF REV__ENST00000300441.8_1_17:48538681-48539000:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1595458984375 3 309.843488 926.508634 -0.5446 -0.00016874 0.80937 0.00025078 0.26477 8.2038E-05 309.8436438418663 17.873 0.53787 17.873 17.657 18.195 0 24 14 2 0 0 0 1.0244 1 2807 2807 4.3292 1.594 1 1069400 + 15400 20400 10085 10088 15487 15487 0.04244044057031715 FSCKGFDNY 9 Unmodified _FSCKGFDNY_ 0 0 0 tr|U7SW01|U7SW01_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01404PE=4SV=1 tr|U7SW01|U7SW01_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01404PE=4SV=1 tr|U7SW01|U7SW01_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01404PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2752075195312 2 540.726392 1079.43823 0.2277 0.00012312 0.53969 0.00029183 0.76739 0.00041495 540.7268058329902 61.362 0.5457 58.4 58.105 58.651 -2.9614 23 15 2 0 0 0 0.55728 1 11798 11798 0.40827 0.15679 1 2347100 15401 26243 10086 10089 15488 15488 -0.09831042113592048 FSCRPISL 8 Unmodified _FSCRPISL_ 0 0 0 REV__ENST00000313146.10_1_1:156697789-156698104:-|nuORF REV__ENST00000313146.10_1_1:156697789-156698104:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5341491699219 2 461.744388 921.474223 0.017765 8.2028E-06 1.1071 0.00051118 1.1248 0.00051938 461.7448488628116 136.86 1.1609 131.94 131.6 132.76 -4.9216 83 32 3 0 0 0 0.69887 1 26434 26434 14.582 0 1 37079000 + 15402 20501 10087 10090 15489 15489 0.010344598539290928 FSCRPISL 8 Unmodified _FSCRPISL_ 0 0 0 REV__ENST00000313146.10_1_1:156697789-156698104:-|nuORF REV__ENST00000313146.10_1_1:156697789-156698104:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.744388 921.474223 0.19243 8.8855E-05 1.1221 0.00051813 1.3145 0.00060698 461.74484303028356 132.01 1.0044 132.01 131.64 132.65 0 0.014368 1.3367E-05 NaN 14.582 68 28 3 NaN NaN NaN NaN 0 NaN NaN 0 25948000 + 15403 20501 10087 10090 0.010344598539290928 FSCRPISL 8 Unmodified _FSCRPISL_ 0 0 0 REV__ENST00000313146.10_1_1:156697789-156698104:-|nuORF REV__ENST00000313146.10_1_1:156697789-156698104:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.744388 921.474223 0.23183 0.00010705 0.97229 0.00044895 1.2041 0.000556 461.7447628015056 136.87 1.045 132.03 131.69 132.73 -4.84 0.040713 -0.00012499 NaN 14.582 77 29 3 NaN NaN NaN NaN 0 NaN NaN 0 28934000 + 15404 20501 10087 10090 0.010344598539290928 FSCVLSRLY 9 Unmodified _FSCVLSRLY_ 0 0 0 REV__ENST00000595109.5_1_2:145277364-145277541:+|nuORF REV__ENST00000595109.5_1_2:145277364-145277541:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.793701171875 2 544.283877 1086.5532 0.28606 0.0001557 2.3477 0.0012778 2.6338 0.0014335 544.7884664578539 144.53 0.2097 139.86 139.78 139.99 -4.6694 7 5 2 0 0 0 0.79204 1 28620 28620 11.64 5.2862 1 3842000 + 15405 23372 10088 10091 15490 15490 0.013386870882186486 FSCWPFLYCWH 11 Unmodified _FSCWPFLYCWH_ 0 0 0 ENST00000358595.9_2_1:150782642-150782786:-|nuORF ENST00000358595.9_2_1:150782642-150782786:-|nuORF ENST00000358595.9_2_1:150782642-150782786:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 496.87823486328125 3 496.879104 1487.61548 NaN NaN NaN NaN NaN NaN NaN 11.248 1 10.154 9.654 10.654 -1.0936 0 0 0 0.23698 1 1324 1324 0 0 1 15406 8991 10089 10092 15491 15491 -0.10881909835097758 FSDDGAVSL 9 Unmodified _FSDDGAVSL_ 0 0 0 ENST00000591956.1_1_17:74553872-74557410:+|nuORF ENST00000591956.1_1_17:74553872-74557410:+|nuORF ENST00000591956.1_1_17:74553872-74557410:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 910.4155883789062 1 910.415253 909.407977 0.39305 0.00035784 0.073583 6.6991E-05 0.46663 0.00042483 910.4151958475644 95.649 0.62268 95.649 95.318 95.94 0 38 17 3 0 0 0 0.041554 2 18741 18694;18741 74.929 28.131 1 8856100 15407 11631 10090 10093 15492;15493 15493 -0.050350775071365206 FSDDGAVSL 9 Unmodified _FSDDGAVSL_ 0 0 0 ENST00000591956.1_1_17:74553872-74557410:+|nuORF ENST00000591956.1_1_17:74553872-74557410:+|nuORF ENST00000591956.1_1_17:74553872-74557410:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.415283203125 1 910.415253 909.407977 0.22685 0.00020653 0.18269 0.00016632 0.40954 0.00037285 910.4153003053433 99.696 0.62901 95.563 95.267 95.896 -4.1326 39 17 3 0 0 0 0.034704 4 19600 19549;19552;19600;19648 78.149 28.131 1 8680900 15408 11631 10090 10093 15494;15495;15496;15497 15496 -0.050350775071365206 FSDDGAVSL 9 Unmodified _FSDDGAVSL_ 0 0 0 ENST00000591956.1_1_17:74553872-74557410:+|nuORF ENST00000591956.1_1_17:74553872-74557410:+|nuORF ENST00000591956.1_1_17:74553872-74557410:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 910.4156494140625 1 910.415253 909.407977 0.49074 0.00044678 -0.13132 -0.00011956 0.35942 0.00032722 910.4151086688345 99.986 0.60674 95.689 95.347 95.954 -4.297 40 17 3 0 0 0 0.026664 3 19120 19078;19120;19166 85.272 34.979 1 8808900 15409 11631 10090 10093 15498;15499;15500 15499 -0.050350775071365206 FSDDGAVSL 9 Unmodified _FSDDGAVSL_ 0 0 0 ENST00000591956.1_1_17:74553872-74557410:+|nuORF ENST00000591956.1_1_17:74553872-74557410:+|nuORF ENST00000591956.1_1_17:74553872-74557410:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.4155883789062 1 910.415253 909.407977 0.38702 0.00035235 0.10931 9.9514E-05 0.49633 0.00045186 910.4152351118076 99.683 0.72674 95.727 95.376 96.103 -3.9564 45 20 3 0 0 0 0.029966 3 19174 19090;19134;19174 81.613 30.758 1 8580500 15410 11631 10090 10093 15501;15502;15503 15503 -0.050350775071365206 FSDEDDCES 9 Unmodified _FSDEDDCES_ 0 0 0 C9|p.N277Mfs*21|1|0.37|ENSG00000113600|chr5:39315815-39315815|T/-|frameshift_variant;C9|p.M293Cfs*5|1|0.21|ENSG00000113600|chr5:39311371-39311371|T/-|frameshift_variant;C9|p.L339Ffs*10|1|0.22|ENSG00000113600|chr5:39311231-39311232|-/A|frameshift_variant;ENSG00000113600|ENST00000263408|C9;C9|p.C142Afs*6|1|0.25|ENSG00000113600|chr5:39341199-39341199|G/-|frameshift_variant C9|p.N277Mfs*21|1|0.37|ENSG00000113600|chr5:39315815-39315815|T/-|frameshift_variant C9|p.N277Mfs*21|1|0.37|ENSG00000113600|chr5:39315815-39315815|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6922607421875 2 523.666394 1045.31824 NaN NaN NaN NaN NaN NaN NaN 59.734 1 59.734 59.234 60.234 0 0 0 0 0.1963 1 11446 11446 0.20686 0 1 15411 354 10091 10094 15504 15504 -0.2026111996869986 FSDFLRLPSH 10 Unmodified _FSDFLRLPSH_ 0 0 0 ENST00000594950.5_1_19:58865159-58865438:+|nuORF ENST00000594950.5_1_19:58865159-58865438:+|nuORF ENST00000594950.5_1_19:58865159-58865438:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 610.2743530273438 2 609.81693 1217.61931 0.40271 0.00024558 3.2498 0.0019818 3.6525 0.0022274 609.8177877879132 163.79 0.10153 163.79 163.72 163.82 0 4 2 2 0 0 0 0.74842 1 33048 33048 6.2058 1.3088 1 10042000 15412 11656 10092 10095 15505 15505 0.019202192546117658 FSDHHENKY 9 Unmodified _FSDHHENKY_ 0 0 0 nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2615966796875 2 588.757069 1175.49959 0.22912 0.0001349 0.17581 0.00010351 0.40493 0.00023841 588.7571789444997 14.456 1.5702 14.456 14.279 15.849 0 98 44 6 0 0 0 0.063365 1 2156 2156 66.457 47.2 1 276270000 15413 2029 10093 10096 15506 15506 -0.08114394089966481 FSDHHENKY 9 Unmodified _FSDHHENKY_ 0 0 0 nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2615966796875 2 588.757069 1175.49959 -0.15859 -9.337E-05 0.48189 0.00028372 0.32331 0.00019035 588.7574030118784 15.438 0.84128 14.324 14.167 15.008 -1.1142 76 23 6 0 0 0 0.039785 2 2376 2376;2424 75.761 60.923 1 254780000 15414 2029 10093 10096 15507;15508 15507 -0.08114394089966481 FSDHHENKY 9 Unmodified _FSDHHENKY_ 0 0 0 nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2612915039062 2 588.757069 1175.49959 -0.18172 -0.00010699 0.44731 0.00026336 0.26558 0.00015636 588.7573636538126 15.471 0.78641 14.25 14.101 14.887 -1.2219 60 22 5 0 0 0 0.063365 1 2164 2164 66.457 47.2 1 148250000 15415 2029 10093 10096 15509 15509 -0.08114394089966481 FSDHHENKYL 10 Unmodified _FSDHHENKYL_ 0 0 0 nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.2126770019531 3 430.53516 1288.58365 -0.45824 -0.00019729 0.48456 0.00020862 0.02632 1.1332E-05 430.5353138770556 35.505 0.88963 33.111 32.491 33.381 -2.3938 58 24 4 0 0 0 0.15354 1 6575 6575 27.289 20.659 1 12457000 15416 2029 10094 10097 15510 15510 -0.04909862993054048 FSDHHENKYL 10 Unmodified _FSDHHENKYL_ 0 0 0 nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 430.53516 1288.58365 0.13584 5.8484E-05 0.020323 8.7499E-06 0.15616 6.7234E-05 430.53511996856463 33.058 0.62768 33.058 32.746 33.373 0 -0.035393 -8.3301E-05 NaN 27.289 53 17 4 NaN NaN NaN NaN 0 NaN NaN 0 10119000 15417 2029 10094 10097 -0.04909862993054048 FSDHHENKYL 10 Unmodified _FSDHHENKYL_ 0 0 0 nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 430.53516 1288.58365 0.12409 5.3423E-05 -0.042864 -1.8454E-05 0.081222 3.4969E-05 430.53507939570636 35.382 0.89549 33.129 32.606 33.501 -2.2527 0.035404 -0.00016491 NaN 27.289 63 25 4 NaN NaN NaN NaN 0 NaN NaN 0 14428000 15418 2029 10094 10097 -0.04909862993054048 FSDHHENKYL 10 Unmodified _FSDHHENKYL_ 0 0 0 nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 430.53516 1288.58365 0.092327 3.975E-05 -0.07879 -3.3922E-05 0.013537 5.8281E-06 430.5351070983423 35.352 0.59106 33.076 32.795 33.386 -2.2766 -0.017722 -0.00021132 NaN 27.289 55 16 4 NaN NaN NaN NaN 0 NaN NaN 0 11531000 15419 2029 10094 10097 -0.04909862993054048 FSDIHAGELY 10 Unmodified _FSDIHAGELY_ 0 0 0 ENSG00000010404|ENST00000340855|IDS ENSG00000010404|ENST00000340855|IDS ENSG00000010404|ENST00000340855|IDS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3134155273438 2 576.272021 1150.52949 0.51117 0.00029457 -0.082985 -4.7822E-05 0.42818 0.00024675 576.271935116687 99.125 0.65717 99.125 98.789 99.446 0 47 18 3 0 0 0 5.2093E-07 4 19446 19375;19385;19444;19446 144.35 92.082 1 8429400 15420 1064 10095 10098 15511;15512;15513;15514 15514 -0.03975455144609441 FSDIHAGELY 10 Unmodified _FSDIHAGELY_ 0 0 0 ENSG00000010404|ENST00000340855|IDS ENSG00000010404|ENST00000340855|IDS ENSG00000010404|ENST00000340855|IDS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.313720703125 2 576.272021 1150.52949 -0.089664 -5.1671E-05 0.66401 0.00038265 0.57435 0.00033098 576.2723014808145 103.39 0.67635 99.207 98.875 99.551 -4.1861 57 19 4 0 0 0 0.00073057 3 20300 20273;20300;20357 118.89 66.626 1 9250800 15421 1064 10095 10098 15515;15516;15517 15516 -0.03975455144609441 FSDIHAGELY 10 Unmodified _FSDIHAGELY_ 0 0 0 ENSG00000010404|ENST00000340855|IDS ENSG00000010404|ENST00000340855|IDS ENSG00000010404|ENST00000340855|IDS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3163452148438 2 576.272021 1150.52949 0.33488 0.00019298 0.16925 9.7532E-05 0.50412 0.00029051 576.2720191247525 103.54 0.66321 99.192 98.854 99.517 -4.346 48 18 3 0 0 0 8.7244E-05 2 19816 19816;19850 131.27 78.999 1 10257000 15422 1064 10095 10098 15518;15519 15518 -0.03975455144609441 FSDIHAGELY 10 Unmodified _FSDIHAGELY_ 0 0 0 ENSG00000010404|ENST00000340855|IDS ENSG00000010404|ENST00000340855|IDS ENSG00000010404|ENST00000340855|IDS MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.272021 1150.52949 0.61063 0.00035189 -0.15211 -8.7656E-05 0.45852 0.00026423 576.2718791629046 103.24 0.71189 99.223 98.845 99.557 -4.0212 0.036145 -0.00032682 NaN 144.35 50 19 3 NaN NaN NaN NaN 0 NaN NaN 0 11434000 15423 1064 10095 10098 -0.03975455144609441 FSDIRREGWLY 11 Unmodified _FSDIRREGWLY_ 0 0 0 ARHGAP23|p.L853Pfs*4|1|0.17|ENSG00000275832|chr17:38479803-38479804|-/G|frameshift_variant;ARHGAP23|p.G852Afs*70|1|0.22|ENSG00000275832|chr17:38479804-38479804|G/-|frameshift_variant;nc|ENSG00000275832|Q9P227-2|ARHGAP23;ENSG00000275832|ENST00000622683|ARHGAP23 ARHGAP23|p.L853Pfs*4|1|0.17|ENSG00000275832|chr17:38479803-38479804|-/G|frameshift_variant ARHGAP23|p.L853Pfs*4|1|0.17|ENSG00000275832|chr17:38479803-38479804|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2455749511719 3 481.245609 1440.715 0.11845 5.7005E-05 -1.0818 -0.00052059 -0.96331 -0.00046359 481.2452424399842 127.28 0.62076 122.66 122.3 122.92 -4.6172 22 17 2 0 0 0 0.78256 1 25103 25103 5.9687 0.44542 1 1573800 15424 205 10096 10099 15520 15520 0.012269473748574455 FSDLLGTSS 9 Unmodified _FSDLLGTSS_ 0 0 0 REV__HEATR5A|p.I454F|1|0.33|ENSG00000129493|chr14:31383757-31383757|T/A|missense_variant REV__HEATR5A|p.I454F|1|0.33|ENSG00000129493|chr14:31383757-31383757|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 463.734375 2 463.726915 925.439277 NaN NaN NaN NaN NaN NaN NaN 67.451 1 67.451 66.951 67.951 0 0 0 0 0.19679 1 13039 13039 1.2148 0 1 + 15425 23607 10097 10100 15521 15521 -0.026425044730444824 FSDLSDSEF 9 Unmodified _FSDLSDSEF_ 0 0 0 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7014770507812 2 523.719287 1045.42402 0.18221 9.5426E-05 0.78129 0.00040918 0.9635 0.0005046 524.2208647040766 133.69 0.38377 133.69 133.35 133.73 0 11 10 2 0 0 0 0.12183 2 26432 26424;26432 48.346 10.372 1 4593200 15426 5494 10098 10101 15522;15523 15523 -0.09687416060910436 FSDLSDSEF 9 Unmodified _FSDLSDSEF_ 0 0 0 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6983642578125 2 523.719287 1045.42402 -0.47288 -0.00024766 1.8185 0.0009524 1.3456 0.00070474 524.2212312746949 138.65 0.56059 133.7 133.46 134.02 -4.952 21 15 2 0 0 0 0.28819 1 26695 26695 32.305 1.6689 1 1647700 15427 5494 10098 10101 15524 15524 -0.09687416060910436 FSDLYNEVY 9 Unmodified _FSDLYNEVY_ 0 0 0 SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant;SMOX|p.G303Afs*20|1|0.51|ENSG00000088826|chr20:4182381-4182381|G/-|frameshift_variant;nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;SMOX|p.V170Cfs*24|1|0.31|ENSG00000088826|chr20:4181871-4181871|G/-|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3350830078125 2 575.258579 1148.50261 0.28914 0.00016633 0.0092347 5.3123E-06 0.29838 0.00017164 575.2585155825548 127.04 1.2507 127.04 126.54 127.79 0 119 35 5 0 0 0 0.081765 1 25034 25034 61.357 34.474 1 114800000 15428 1735 10099 10102 15525 15525 -0.0657056375580396 FSDLYNEVY 9 Unmodified _FSDLYNEVY_ 0 0 0 SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant;SMOX|p.G303Afs*20|1|0.51|ENSG00000088826|chr20:4182381-4182381|G/-|frameshift_variant;nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;SMOX|p.V170Cfs*24|1|0.31|ENSG00000088826|chr20:4181871-4181871|G/-|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3134765625 2 575.258579 1148.50261 -0.032162 -1.8502E-05 0.32932 0.00018945 0.29716 0.00017094 575.2587148083936 132.25 1.488 127.61 127.1 128.59 -4.6399 141 41 5 0 0 0 0.026664 5 26055 25994;26038;26055;26071;26124 85.272 57.643 1 158570000 15429 1735 10099 10102 15526;15527;15528;15529;15530 15528 -0.0657056375580396 FSDLYNEVY 9 Unmodified _FSDLYNEVY_ 0 0 0 SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant;SMOX|p.G303Afs*20|1|0.51|ENSG00000088826|chr20:4182381-4182381|G/-|frameshift_variant;nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;SMOX|p.V170Cfs*24|1|0.31|ENSG00000088826|chr20:4181871-4181871|G/-|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3247680664062 2 575.258579 1148.50261 0.12622 7.2609E-05 0.14346 8.2527E-05 0.26968 0.00015514 575.258602064327 132.47 1.6583 127.62 127.08 128.74 -4.8527 133 46 5 0 0 0 0.029966 3 25395 25395;25441;25477 81.613 47.511 1 118250000 15430 1735 10099 10102 15531;15532;15533 15531 -0.0657056375580396 FSDLYNEVY 9 Unmodified _FSDLYNEVY_ 0 0 0 SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant;SMOX|p.G303Afs*20|1|0.51|ENSG00000088826|chr20:4182381-4182381|G/-|frameshift_variant;nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;SMOX|p.V170Cfs*24|1|0.31|ENSG00000088826|chr20:4181871-4181871|G/-|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant SMOX|p.R304Qfs*4|1|0.4|ENSG00000088826|chr20:4182380-4182381|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3192749023438 2 575.258579 1148.50261 0.20112 0.00011569 0.12375 7.1189E-05 0.32487 0.00018688 575.2586199734329 132.41 1.6355 127.61 126.87 128.5 -4.799 150 46 5 0 0 0 0.62102 1 25410 25410 11.64 1.5664 1 147510000 15431 1735 10099 10102 15534 15534 -0.0657056375580396 FSDPFTGGGRY 11 Unmodified _FSDPFTGGGRY_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA;ENST00000520641.1_1_9:26916617-26919410:-|nuORF ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2752685546875 2 602.275095 1202.53564 0.37727 0.00022722 0.050573 3.0459E-05 0.42784 0.00025768 602.2749723891933 114.73 0.83949 114.73 114.29 115.13 0 49 23 3 0 0 0 0.0066307 7 22566 22509;22513;22523;22566;22617;22648;22651 136.39 86.459 1 5440200 15432 4062 10100 10103 15535;15536;15537;15538;15539;15540;15541 15538 -0.05752936913063422 FSDPFTGGGRY 11 Unmodified _FSDPFTGGGRY_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA;ENST00000520641.1_1_9:26916617-26919410:-|nuORF ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2948608398438 2 602.275095 1202.53564 1.3081 0.00078784 -0.95001 -0.00057217 0.3581 0.00021568 602.2744176002398 119.56 1.0181 115.04 114.41 115.43 -4.5221 60 28 3 0 0 0 2.1856E-15 5 23552 23474;23517;23552;23562;23612 163.69 91.764 1 5807400 15433 4062 10100 10103 15542;15543;15544;15545;15546 15544 -0.05752936913063422 FSDPFTGGGRY 11 Unmodified _FSDPFTGGGRY_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA;ENST00000520641.1_1_9:26916617-26919410:-|nuORF ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2752075195312 2 602.275095 1202.53564 0.89807 0.00054089 -0.50198 -0.00030233 0.39609 0.00023855 602.2747327070697 119.44 1.0301 114.8 114.39 115.42 -4.645 57 28 3 0 0 0 4.5831E-16 5 22951 22863;22903;22927;22951;23002 171.46 108.89 1 6650400 15434 4062 10100 10103 15547;15548;15549;15550;15551 15550 -0.05752936913063422 FSDPFTGGGRY 11 Unmodified _FSDPFTGGGRY_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA;ENST00000520641.1_1_9:26916617-26919410:-|nuORF ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.275390625 2 602.275095 1202.53564 0.47926 0.00028865 -0.18211 -0.00010968 0.29715 0.00017897 602.27499488704 119.29 0.90582 114.82 114.39 115.3 -4.467 60 25 3 0 0 0 2.1856E-15 8 22985 22876;22879;22900;22944;22985;23003;23011;23032 163.69 101.11 1 5681400 15435 4062 10100 10103 15552;15553;15554;15555;15556;15557;15558;15559 15556 -0.05752936913063422 FSDVDSPYY 9 Unmodified _FSDVDSPYY_ 0 0 0 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7750854492188 2 546.729655 1091.44476 0.085322 4.6648E-05 0.39911 0.00021821 0.48443 0.00026485 546.7298497870484 93.792 1.0872 93.792 93.292 94.379 0 87 30 4 0 0 0 0.60805 1 18404 18404 12.532 0 1 21573000 15436 6096 10101 10104 15560 15560 -0.09730825681231181 FSDVDSPYY 9 Unmodified _FSDVDSPYY_ 0 0 0 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77734375 2 546.729655 1091.44476 0.1768 9.6663E-05 0.2932 0.0001603 0.47 0.00025696 546.7298131750018 98.255 1.0454 94.299 93.854 94.899 -3.9564 88 30 4 0 0 0 0.039965 2 18876 18876;18879 105.38 89.906 1 19053000 15437 6096 10101 10104 15561;15562 15561 -0.09730825681231181 FSDVDSPYY 9 Unmodified _FSDVDSPYY_ 0 0 0 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.729655 1091.44476 0.22985 0.00012567 0.34473 0.00018847 0.57458 0.00031414 546.729875054613 98.543 1.0139 94.41 93.876 94.89 -4.1326 0.023069 1.7245E-05 NaN 67.344 81 25 4 NaN NaN NaN NaN 0 NaN NaN 0 26775000 15438 6096 10101 10104 -0.09730825681231181 FSDVDSPYY 9 Unmodified _FSDVDSPYY_ 0 0 0 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.729655 1091.44476 0.22971 0.00012559 0.34052 0.00018617 0.57024 0.00031177 546.7298423699042 98.721 0.97607 94.452 93.987 94.963 -4.2692 0.065312 1.2649E-05 NaN 67.344 77 26 4 NaN NaN NaN NaN 0 NaN NaN 0 21842000 15439 6096 10101 10104 -0.09730825681231181 FSDYPRGVRY 10 Unmodified _FSDYPRGVRY_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7637329101562 2 630.312012 1258.60947 NaN NaN NaN NaN NaN NaN NaN 68.96 1 65.57 65.07 66.07 -3.3903 0 0 0 0.22518 1 13031 13031 22.736 6.5872 1 15440 2938 10102 10105 15563 15563 -0.009489687507539202 FSEDPWNYF 9 Unmodified _FSEDPWNYF_ 0 0 0 REV__ENSG00000115540|ENST00000323303|MOB4 REV__ENSG00000115540|ENST00000323303|MOB4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2727661132812 2 602.750921 1203.48729 NaN NaN NaN NaN NaN NaN NaN 103.45 1 103.45 102.95 103.95 0 0 0 0 0.23508 1 20329 20329 12.532 3.9383 1 + 15441 15437 10103 10106 15564 15564 -0.10631430553007704 FSEFGNSDIY 10 Unmodified _FSEFGNSDIY_ 0 0 0 ENST00000469573.1_1_2:165365242-165383622:-|nuORF;ENST00000488342.5_1_2:165365032-165477819:-|nuORF;GRB14|p.E402Rfs*18|1|0.29|ENSG00000115290|chr2:164497391-164497392|-/T|frameshift_variant;nc|ENSG00000115290|Q14449-2|GRB14;ENSG00000115290|ENST00000263915|GRB14 ENST00000469573.1_1_2:165365242-165383622:-|nuORF ENST00000469573.1_1_2:165365242-165383622:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2554931640625 2 589.753661 1177.49277 0.68685 0.00040508 -3.5027 -0.0020657 -2.8159 -0.0016607 589.7517639254095 86.618 0.37951 82.668 82.546 82.926 -3.9503 14 10 2 0 0 0 0.6817 1 16494 16494 13.042 0.80181 1 1165100 15442 2842 10104 10107 15565 15565 -0.08887751761153595 FSELRGKL 8 Unmodified _FSELRGKL_ 0 0 0 nc|ENSG00000254685|O14772-3|FPGT;ENST00000533006.1_1_1:74663962-74715145:+|nuORF;FPGT|p.N170Kfs*13|1|0.27|ENSG00000254685|chr1:74204508-74204509|-/C|frameshift_variant;FPGT|p.F224Lfs*4|1|0.32|ENSG00000254685|chr1:74204677-74204677|T/-|frameshift_variant;nc|ENSG00000254685|O14772-2|FPGT;ENSG00000254685|ENST00000370898|FPGT;nc|ENSG00000254685|O14772|FPGT;nc|ENSG00000116783|Q59H18-3|TNNI3K;nc|ENSG00000116783|Q59H18-4|TNNI3K;nc|ENSG00000116783|Q59H18-1|TNNI3K nc|ENSG00000254685|O14772-3|FPGT nc|ENSG00000254685|O14772-3|FPGT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1858825683594 3 317.187032 948.539266 NaN NaN NaN NaN NaN NaN NaN 122.49 1 117.95 117.45 118.45 -4.5476 0 0 0 0.21486 1 24149 24149 3.5965 0 1 15443 12628 10105 10108 15566 15566 0.06293777651421806 FSENEKNAAYY 11 Unmodified _FSENEKNAAYY_ 0 0 0 nc|ENSG00000081019|Q5VWQ0-4|RSBN1;ENSG00000081019|ENST00000261441|RSBN1 nc|ENSG00000081019|Q5VWQ0-4|RSBN1 nc|ENSG00000081019|Q5VWQ0-4|RSBN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 668.177734375 2 668.296224 1334.5779 0.6619 0.00044234 -0.39154 -0.00026166 0.27036 0.00018068 668.2958162556237 55.579 0.41608 52.696 52.458 52.874 -2.8837 18 11 2 0 0 0 0.80958 1 10617 10617 27.629 16.805 1 5818500 15444 1623 10106 10109 15567 15567 -0.0760100629538556 FSENEKNAAYY 11 Unmodified _FSENEKNAAYY_ 0 0 0 nc|ENSG00000081019|Q5VWQ0-4|RSBN1;ENSG00000081019|ENST00000261441|RSBN1 nc|ENSG00000081019|Q5VWQ0-4|RSBN1 nc|ENSG00000081019|Q5VWQ0-4|RSBN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 668.296224 1334.5779 0.30158 0.00020154 -0.34037 -0.00022747 -0.038796 -2.5927E-05 668.2958083738031 55.808 0.38842 52.619 52.458 52.846 -3.1895 -0.028876 -0.00028516 NaN 27.629 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5195100 15445 1623 10106 10109 -0.0760100629538556 FSENEKNAAYY 11 Unmodified _FSENEKNAAYY_ 0 0 0 nc|ENSG00000081019|Q5VWQ0-4|RSBN1;ENSG00000081019|ENST00000261441|RSBN1 nc|ENSG00000081019|Q5VWQ0-4|RSBN1 nc|ENSG00000081019|Q5VWQ0-4|RSBN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 668.296224 1334.5779 0.22591 0.00015098 0.26568 0.00017755 0.49159 0.00032853 668.2960965013214 55.805 0.48787 52.629 52.381 52.869 -3.1761 -0.018872 0.00052488 NaN 27.629 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2917400 15446 1623 10106 10109 -0.0760100629538556 FSEPRAIFY 9 Unmodified _FSEPRAIFY_ 0 0 0 nc|ENSG00000123143|Q16512-2|PKN1;ENSG00000123143|ENST00000242783|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 565.2346801757812 2 565.287474 1128.5604 0.023305 1.3174E-05 0.21091 0.00011922 0.23421 0.0001324 565.2875069557698 133.47 0.77246 128.6 128.19 128.96 -4.8726 52 21 3 0 0 0 0.046332 1 25627 25627 54.068 49.353 1 9609100 15447 12301 10107 10110 15568 15568 0.001257429602674165 FSEPRAIFY 9 Unmodified _FSEPRAIFY_ 0 0 0 nc|ENSG00000123143|Q16512-2|PKN1;ENSG00000123143|ENST00000242783|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 565.287474 1128.5604 0.27998 0.00015827 -0.2544 -0.00014381 0.025584 1.4463E-05 565.2873036461992 128.57 0.84628 128.57 128.18 129.02 0 -0.049111 -0.00037423 NaN 54.068 45 23 3 NaN NaN NaN NaN 0 NaN NaN 0 6911500 15448 12301 10107 10110 0.001257429602674165 FSEPRAIFY 9 Unmodified _FSEPRAIFY_ 0 0 0 nc|ENSG00000123143|Q16512-2|PKN1;ENSG00000123143|ENST00000242783|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 565.287474 1128.5604 -0.11715 -6.6221E-05 0.37703 0.00021313 0.25988 0.00014691 565.2876118645833 133.32 0.69887 128.68 128.33 129.03 -4.6399 0.059834 0.00033965 NaN 54.068 51 19 3 NaN NaN NaN NaN 0 NaN NaN 0 10356000 15449 12301 10107 10110 0.001257429602674165 FSEPRAIFY 9 Unmodified _FSEPRAIFY_ 0 0 0 nc|ENSG00000123143|Q16512-2|PKN1;ENSG00000123143|ENST00000242783|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 565.287474 1128.5604 0.22453 0.00012692 -0.070911 -4.0085E-05 0.15362 8.6838E-05 565.2874005177271 133.45 0.68062 128.63 128.2 128.88 -4.8175 0.010967 -0.00016678 NaN 54.068 50 18 4 NaN NaN NaN NaN 0 NaN NaN 0 8266000 15450 12301 10107 10110 0.001257429602674165 FSEYDKFIR 9 Unmodified _FSEYDKFIR_ 0 0 0 REV__tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1 REV__tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2869873046875 2 602.803488 1203.59242 0.44606 0.00026888 -4.4532 -0.0026844 -4.0072 -0.0024155 603.3037556853927 144.35 0.13806 139.29 139.21 139.35 -5.0671 5 3 2 0 0 0 0.85111 1 27853 27853 3.5965 0.31518 1 2442900 + 15451 24889 10108 10111 15569 15569 -0.0012288935658943956 FSFERHQFY 9 Unmodified _FSFERHQFY_ 0 0 0 REV__PRIM1|p.C170*|1|0.29|ENSG00000198056|chr12:56746104-56746117|CTGATTCATCACAG/-|frameshift_variant REV__PRIM1|p.C170*|1|0.29|ENSG00000198056|chr12:56746104-56746117|CTGATTCATCACAG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7697143554688 2 630.793455 1259.57236 NaN NaN NaN NaN NaN NaN NaN 125.01 1 120.41 119.91 120.91 -4.5984 0 0 0 0.23508 1 24651 24651 12.532 0.29089 1 + 15452 19387 10109 10112 15570 15570 -0.04704640296517937 FSFFYFLWILW 11 Unmodified _FSFFYFLWILW_ 0 0 0 MYCT1|p.F29Sfs*28|2|0.29|ENSG00000120279|chr6:152697982-152697982|T/-|frameshift_variant MYCT1|p.F29Sfs*28|2|0.29|ENSG00000120279|chr6:152697982-152697982|T/-|frameshift_variant MYCT1|p.F29Sfs*28|2|0.29|ENSG00000120279|chr6:152697982-152697982|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6912231445312 3 523.604075 1567.7904 NaN NaN NaN NaN NaN NaN NaN 153.96 1 153.96 153.46 154.46 0 0 0 0 0.22632 1 30854 30854 0.026206 0 1 15453 12182 10110 10113 15571 15571 0.02921156573211192 FSFFYFLWILW 11 Unmodified _FSFFYFLWILW_ 0 0 0 MYCT1|p.F29Sfs*28|2|0.29|ENSG00000120279|chr6:152697982-152697982|T/-|frameshift_variant MYCT1|p.F29Sfs*28|2|0.29|ENSG00000120279|chr6:152697982-152697982|T/-|frameshift_variant MYCT1|p.F29Sfs*28|2|0.29|ENSG00000120279|chr6:152697982-152697982|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6875610351562 3 523.604075 1567.7904 NaN NaN NaN NaN NaN NaN NaN 73.708 1 70.031 69.531 70.531 -3.6764 0 0 0 0.23698 1 13932 13932 0.45452 0 1 15454 12182 10110 10113 15572 15572 0.02921156573211192 FSGKVFPF 8 Unmodified _FSGKVFPF_ 0 0 0 ENSG00000204610|ENST00000376694|TRIM15 ENSG00000204610|ENST00000376694|TRIM15 ENSG00000204610|ENST00000376694|TRIM15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17010498046875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 62.181 1 62.181 61.681 62.681 0 0 0 0 0.21486 1 11938 11938 1.6526 0.45928 1 15455 7594 10111 10114 15573 15573 0.018796052197103563 FSGKVFPF 8 Unmodified _FSGKVFPF_ 0 0 0 ENSG00000204610|ENST00000376694|TRIM15 ENSG00000204610|ENST00000376694|TRIM15 ENSG00000204610|ENST00000376694|TRIM15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1703186035156 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 91.54 1 91.54 91.04 92.04 0 0 0 0 0.21486 1 17891 17891 1.6526 0 1 15456 7594 10111 10114 15574 15574 0.018796052197103563 FSGRGEQATF 10 Unmodified _FSGRGEQATF_ 0 0 0 CYP2A6|p.V140Wfs*35|1|0.29|ENSG00000255974|chr19:40848689-40848689|C/-|frameshift_variant;ENSG00000255974|ENST00000301141|CYP2A6;ENSG00000198077|ENST00000301146|CYP2A7;ENSG00000197838|ENST00000330436|CYP2A13 CYP2A6|p.V140Wfs*35|1|0.29|ENSG00000255974|chr19:40848689-40848689|C/-|frameshift_variant CYP2A6|p.V140Wfs*35|1|0.29|ENSG00000255974|chr19:40848689-40848689|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.20111083984375 3 367.177084 1098.50942 NaN NaN NaN NaN NaN NaN NaN 35.739 1 33.345 32.845 33.845 -2.3938 0 0 0 2.8426 1 6588 6588 0.013265 0 1 15457 767 10112 10115 15575 15575 -0.035892060845753804 FSGSHLFCP 9 Unmodified _FSGSHLFCP_ 0 0 0 REV__ENST00000606025.5_3_2:71168962-71169430:-|nuORF REV__ENST00000606025.5_3_2:71168962-71169430:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 497.2388610839844 2 497.726195 993.437837 0.19727 9.8184E-05 -2.7487 -0.0013681 -2.5514 -0.0012699 497.72441407224227 158.81 0.50377 154.01 153.72 154.23 -4.7952 22 13 2 0 0 0 0.60888 1 31539 31539 1.2148 1.1855 1 965740 + 15458 23455 10113 10116 15576 15576 -0.059144170427885 FSGSHLFCP 9 Unmodified _FSGSHLFCP_ 0 0 0 REV__ENST00000606025.5_3_2:71168962-71169430:-|nuORF REV__ENST00000606025.5_3_2:71168962-71169430:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 497.726195 993.437837 0.2001 9.9593E-05 -0.96938 -0.00048249 -0.76928 -0.00038289 497.7243623495001 153.83 0.67203 153.83 153.55 154.22 0 -0.16141 0.0015772 NaN 1.2148 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2442000 + 15459 23455 10113 10116 -0.059144170427885 FSGSHLFCP 9 Unmodified _FSGSHLFCP_ 0 0 0 REV__ENST00000606025.5_3_2:71168962-71169430:-|nuORF REV__ENST00000606025.5_3_2:71168962-71169430:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 497.726195 993.437837 0.079434 3.9536E-05 -2.8687 -0.0014278 -2.7893 -0.0013883 497.72470815539714 159.41 0.49718 154.13 153.9 154.4 -5.2748 0.14171 -0.00031354 NaN 1.2148 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2122300 + 15460 23455 10113 10116 -0.059144170427885 FSHSVPVR 8 Unmodified _FSHSVPVR_ 0 0 0 REV__ENST00000595316.5_1_19:51376719-51380013:+|nuORF REV__ENST00000595316.5_1_19:51376719-51380013:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.17236328125 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 159.06 1 154.26 153.76 154.76 -4.7952 0 0 0 0.21486 1 31629 31629 0.45834 0 1 + 15461 17965 10114 10117 15577 15577 0.026003378201494343 FSIDLPEHPP 10 Unmodified _FSIDLPEHPP_ 0 0 0 ENSG00000262543|ENST00000573100|SMIM28 ENSG00000262543|ENST00000573100|SMIM28 ENSG00000262543|ENST00000573100|SMIM28 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3302612304688 2 576.290214 1150.56587 NaN NaN NaN NaN NaN NaN NaN 130.01 1 125.23 124.73 125.73 -4.7725 0 0 0 2.8426 1 25014 25014 0.26539 0.23918 1 15462 7966 10115 10118 15578 15578 -0.0033857824791994062 FSIGQQVH 8 Unmodified _FSIGQQVH_ 0 0 0 REV__ENSG00000112624|ENST00000314073|BICRAL REV__ENSG00000112624|ENST00000314073|BICRAL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2375793457031 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 84.816 1 84.816 84.316 85.316 0 0 0 0 0.17344 1 16548 16548 34.102 9.4286 1 + 15463 15304 10116 10119 15579 15579 0.00036345066178000707 FSIKGVIVV 9 Unmodified _FSIKGVIVV_ 0 0 0 REV__ENSG00000178607|ENST00000433197|ERN1 REV__ENSG00000178607|ENST00000433197|ERN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7828369140625 2 481.307678 960.600803 NaN NaN NaN NaN NaN NaN NaN 55.325 1 52.441 51.941 52.941 -2.8837 0 0 0 0.1963 1 10585 10585 0.073264 0 1 + 15464 18615 10117 10120 15580 15580 0.11892709350718178 FSILRRFIMSL 11 Unmodified _FSILRRFIMSL_ 0 0 0 ENST00000366647.8_1_1:231386833-231396301:+|nuORF ENST00000366647.8_1_1:231386833-231396301:+|nuORF ENST00000366647.8_1_1:231386833-231396301:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.52239990234375 3 461.60408 1381.79041 NaN NaN NaN NaN NaN NaN NaN 136.98 1 132.34 131.84 132.84 -4.6413 0 0 0 0.23103 1 27031 27031 7.4771 3.0709 1 15465 9050 10118 10121 15581 15581 0.11478833301566738 FSIPSPSPP 9 Unmodified _FSIPSPSPP_ 0 0 0 ENSG00000179270|ENST00000331664|PCARE ENSG00000179270|ENST00000331664|PCARE ENSG00000179270|ENST00000331664|PCARE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 102.76 1 98.441 97.941 98.941 -4.3208 0 0 0 0.23508 1 19674 19674 1.0715 0 1 15466 6621 10119 10122 15582 15582 0.00354693631857117 FSISQKPL 8 Unmodified _FSISQKPL_ 0 0 0 REV__ENSG00000006607|ENST00000264042|FARP2 REV__ENSG00000006607|ENST00000264042|FARP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2270812988281 2 460.26601 918.517468 0.1036 4.7682E-05 0.55317 0.0002546 0.65676 0.00030229 460.26631156982194 62.986 0.3497 59.57 59.295 59.644 -3.4158 11 9 2 0 0 0 0.73936 1 11735 11735 8.5933 0 1 367900 + 15467 13875 10120 10123 15583 15583 0.054949729028635375 FSKFSIWRKPK 11 Unmodified _FSKFSIWRKPK_ 0 0 0 REV__PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant REV__PEAK1|p.F1319Lfs*11|1|0.37|ENSG00000173517|chr15:77133125-77133125|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 712.4142456054688 2 712.414072 1422.81359 NaN NaN NaN NaN NaN NaN NaN 168 1 163.21 162.71 163.71 -4.7898 0 0 0 0.22548 1 33933 33933 0.11104 0 1 + 15468 18359 10121 10124 15584 15584 0.11909595410520524 FSKPELKA 8 Unmodified _FSKPELKA_ 0 0 0 REV__ENSG00000125304|ENST00000376387|TM9SF2 REV__ENSG00000125304|ENST00000376387|TM9SF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2449035644531 2 460.26601 918.517468 0.1036 4.7682E-05 0.55317 0.0002546 0.65676 0.00030229 460.26631156982194 62.986 0.3497 59.57 59.295 59.644 -3.4158 11 9 2 0 0 0 1.0066 1 11765 11765 7.2892 0 1 367900 + 15469 15807 10122 10125 15585 15585 0.054949729028635375 FSLHGGAAR 9 Unmodified _FSLHGGAAR_ 0 0 0 ENST00000402886.7_1_6:35444085-35444163:-|nuORF ENST00000402886.7_1_6:35444085-35444163:-|nuORF ENST00000402886.7_1_6:35444085-35444163:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24200439453125 2 458.243401 914.472249 NaN NaN NaN NaN NaN NaN NaN 88.488 1 84.493 83.993 84.993 -3.9953 0 0 0 0.21469 1 16856 16856 19.257 4.6753 1 15470 9521 10123 10126 15586 15586 0.011591671603241593 FSLKQPPEPPP 11 Unmodified _FSLKQPPEPPP_ 0 0 0 ENST00000299612.11_1_17:19286554-19286854:+|nuORF ENST00000299612.11_1_17:19286554-19286854:+|nuORF ENST00000299612.11_1_17:19286554-19286854:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1710510253906 4 309.921032 1235.65502 -0.53195 -0.00016486 -2.3894 -0.00074054 -2.9214 -0.0009054 309.92060570458926 18.774 0.44766 18.774 18.548 18.996 0 22 12 3 0 0 0 0.81642 1 3055 3055 1.4551 0.12547 1 929720 15471 8537 10124 10127 15587 15587 0.04662256711617374 FSLTLAARA 9 Unmodified _FSLTLAARA_ 0 0 0 REV__ENSG00000110628|ENST00000649076|SLC22A18 REV__ENSG00000110628|ENST00000649076|SLC22A18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1855773925781 3 317.187032 948.539266 NaN NaN NaN NaN NaN NaN NaN 117.38 1 113.02 112.52 113.52 -4.3585 0 0 0 0.23508 1 22593 22593 0.96228 0.50394 1 + 15472 15207 10125 10128 15588 15588 0.06293777651410437 FSLYLSAQ 8 Unmodified _FSLYLSAQ_ 0 0 0 REC8|p.P472Qfs*58|1|0.16|ENSG00000100918|chr14:24179686-24179686|C/-|frameshift_variant;nc|ENSG00000100918|O95072-2|REC8;ENSG00000100918|ENST00000611366|REC8;REC8|p.E277Gfs*85|1|0.26|ENSG00000100918|chr14:24177714-24177715|-/C|frameshift_variant REC8|p.P472Qfs*58|1|0.16|ENSG00000100918|chr14:24179686-24179686|C/-|frameshift_variant REC8|p.P472Qfs*58|1|0.16|ENSG00000100918|chr14:24179686-24179686|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1629943847656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 70.37 1 67.121 66.621 67.621 -3.2492 0 0 0 0.23626 1 13693 13693 0.063987 0 1 15473 2025 10126 10129 15589 15589 0.00354693631857117 FSNEERFTG 9 Unmodified _FSNEERFTG_ 0 0 0 C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant;ENSG00000182326|ENST00000360817|C1S;C1S|p.W283Lfs*14|1|0.37|ENSG00000182326|chr12:7065934-7065935|-/A|frameshift_variant;ENST00000460839.5_1_3:186974439-187003786:-|nuORF;nc|ENSG00000127241|P48740-4|MASP1;ENSG00000127241|ENST00000296280|MASP1;nc|ENSG00000127241|P48740-3|MASP1;nc|ENSG00000127241|P48740|MASP1 C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant;nc|ENSG00000127241|P48740-4|MASP1 C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7914428710938 2 543.74617 1085.47779 0.65248 0.00035478 -0.48851 -0.00026563 0.16397 8.9159E-05 543.7458526484622 81.342 0.76796 81.342 80.948 81.716 0 54 21 3 0 0 0 0.54076 1 15831 15831 26.884 2.8631 1 9711200 15474 351;3467 10127 10130 15590 15590 -0.061531988385240766 FSNLNTIDY 9 Unmodified _FSNLNTIDY_ 0 0 0 REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7780151367188 2 543.758746 1085.50294 0.15468 8.4107E-05 -0.052909 -2.877E-05 0.10177 5.5337E-05 543.7586835859865 96.962 0.78553 92.727 92.338 93.124 -4.2348 54 22 3 0 0 0 0.067773 1 18559 18559 65.235 0 1 8210000 + 15475 17202 10128 10131 15591 15591 -0.03639144035946629 FSNLNTIDY 9 Unmodified _FSNLNTIDY_ 0 0 0 REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.776123046875 2 543.758746 1085.50294 0.03966 2.1566E-05 -0.10565 -5.7446E-05 -0.065986 -3.588E-05 543.7586823984241 96.643 0.69463 92.724 92.36 93.054 -3.9194 51 19 3 0 0 0 0.039785 1 18581 18581 75.761 0 1 7492000 + 15476 17202 10128 10131 15592 15592 -0.03639144035946629 FSPFWSVS 8 Unmodified _FSPFWSVS_ 0 0 0 ENST00000492380.1_1_10:75158090-75173791:-|nuORF ENST00000492380.1_1_10:75158090-75173791:-|nuORF ENST00000492380.1_1_10:75158090-75173791:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7332458496094 2 478.729261 955.443968 NaN NaN NaN NaN NaN NaN NaN 42.679 1 40.028 39.528 40.528 -2.651 0 0 0 0.19342 1 7689 7689 26.884 0 1 15477 10537 10129 10132 15593 15593 -0.035535755396153945 FSPGPCPG 8 Unmodified _FSPGPCPG_ 0 0 0 nc|ENSG00000158062|Q5T124-5|UBXN11;nc|ENSG00000158062|Q5T124-3|UBXN11;nc|ENSG00000158062|Q5T124-8|UBXN11;nc|ENSG00000158062|Q5T124-4|UBXN11;nc|ENSG00000158062|Q5T124-2|UBXN11;ENSG00000158062|ENST00000374222|UBXN11 nc|ENSG00000158062|Q5T124-5|UBXN11 nc|ENSG00000158062|Q5T124-5|UBXN11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2131042480469 2 381.167982 760.32141 NaN NaN NaN NaN NaN NaN NaN 38.494 1 38.494 37.994 38.994 0 0 0 0 0.21486 1 7139 7139 2.8892 0 1 15478 5151 10130 10133 15594 15594 -0.06833735542682007 FSPRHVSV 8 Unmodified _FSPRHVSV_ 0 0 0 REV__nc|ENSG00000107242|O14986-3|PIP5K1B REV__nc|ENSG00000107242|O14986-3|PIP5K1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164306640625 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 137.41 1 132.57 132.07 133.07 -4.84 0 0 0 0.21486 1 26473 26473 0.45834 0 1 + 15479 15079 10131 10134 15595 15595 0.026003378201494343 FSQKREPPP 9 Unmodified _FSQKREPPP_ 0 0 0 REV__SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant REV__SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77490234375 2 543.290548 1084.56654 0.1923 0.00010447 -0.52543 -0.00028546 -0.33313 -0.00018099 543.290394175269 84.598 0.92778 80.934 80.573 81.501 -3.6641 55 26 3 0 0 0 0.57447 2 16609 16609;16615 14.838 2.3067 1 6231700 + 15480 19174 10132 10135 15596;15597 15596 0.027642611918054172 FSRQAWKEQ 9 Unmodified _FSRQAWKEQ_ 0 0 0 REV__PEX11B|p.V114M|1|0.11|ENSG00000131779|chr1:145916851-145916851|C/T|missense_variant REV__PEX11B|p.V114M|1|0.11|ENSG00000131779|chr1:145916851-145916851|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2550048828125 2 590.298904 1178.58326 NaN NaN NaN NaN NaN NaN NaN 173.95 1 169.06 168.56 169.56 -4.8916 0 0 0 0.1964 1 34607 34607 0.40827 0.14288 1 + 15481 16090 10133 10136 15598 15598 0.0011076207774749491 FSRVMSRP 8 Unmodified _FSRVMSRP_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2613220214844 2 490.260736 978.50692 NaN NaN NaN NaN NaN NaN NaN 130.31 1 130.31 129.81 130.81 0 0 0 0 0.23107 1 25755 25755 0.12286 0 1 + 15482 17043 10134 10137 15599 15599 0.016806669767788662 FSSKRLVEL 9 Unmodified _FSSKRLVEL_ 0 0 0 REV__ENST00000395080.7_1_4:88898090-88901237:+|nuORF REV__ENST00000395080.7_1_4:88898090-88901237:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2136535644531 3 360.213358 1077.61824 0.051361 1.8501E-05 0.055156 1.9868E-05 0.10652 3.8369E-05 360.21322351864137 105.76 0.31593 101.67 101.57 101.88 -4.0913 9 8 2 0 0 0 0.62314 1 20343 20343 11.495 4.7715 1 589760 + 15483 21256 10135 10138 15600 15600 0.0825400488570267 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1604309082031 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 26.494 1 26.494 25.994 26.994 0 0 0 0 0.23508 1 4640 4640 2.9952 0 1 15484 5448 10136 10139 15601 15601 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16522216796875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 26.549 1 26.549 26.049 27.049 0 0 0 0 0.1964 1 4653 4653 0.40827 0 1 15485 5448 10136 10139 15602 15602 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 77.287 1 77.287 76.787 77.787 0 0 0 0 0.1964 1 15025 15025 0.40827 0 1 15486 5448 10136 10139 15603 15603 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1643981933594 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 56.925 1 54.03 53.53 54.53 -2.8944 0 0 0 0.23508 1 10919 10919 5.7319 0 1 15487 5448 10136 10139 15604 15604 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1693115234375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 60.196 1 57.263 56.763 57.763 -2.9333 0 0 0 0.19665 1 11580 11580 0.40827 0 1 15488 5448 10136 10139 15605 15605 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1693115234375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 60.207 1 57.273 56.773 57.773 -2.9333 0 0 0 0.23508 1 11582 11582 5.7319 0 1 15489 5448 10136 10139 15606 15606 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 65.716 1 62.669 62.169 63.169 -3.047 0 0 0 0.1964 1 12723 12723 0.073264 0 1 15490 5448 10136 10139 15607 15607 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 66.41 1 63.363 62.863 63.863 -3.047 0 0 0 0.23508 1 12867 12867 5.7319 0 1 15491 5448 10136 10139 15608 15608 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 66.616 1 63.507 63.007 64.007 -3.1086 0 0 0 0.1964 1 12912 12912 0.073264 0 1 15492 5448 10136 10139 15609 15609 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1651306152344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 66.835 1 63.726 63.226 64.226 -3.1086 0 0 0 0.1964 1 12956 12956 0.073264 0 1 15493 5448 10136 10139 15610 15610 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.702 1 66.523 66.023 67.023 -3.1796 0 0 0 0.23508 1 13554 13554 5.7319 0 1 15494 5448 10136 10139 15611 15611 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.412 1 71.048 70.548 71.548 -3.3643 0 0 0 0.1964 1 14516 14516 0.073264 0 1 15495 5448 10136 10139 15612 15612 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1644287109375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.223 1 71.859 71.359 72.359 -3.3643 0 0 0 0.1964 1 14674 14674 0.073264 0 1 15496 5448 10136 10139 15613 15613 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 80.004 1 76.494 75.994 76.994 -3.5102 0 0 0 0.19665 1 15624 15624 0.40827 0 1 15497 5448 10136 10139 15614 15614 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 80.697 1 77.14 76.64 77.64 -3.557 0 0 0 0.23508 1 15760 15760 5.7319 0 1 15498 5448 10136 10139 15615 15615 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 61.197 1 57.827 57.327 58.327 -3.3694 0 0 0 0.19665 1 11408 11408 0.40827 0 1 15499 5448 10136 10139 15616 15616 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 68.926 1 65.39 64.89 65.89 -3.5362 0 0 0 0.23508 1 12968 12968 2.9952 0 1 15500 5448 10136 10139 15617 15617 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.266 1 65.73 65.23 66.23 -3.5362 0 0 0 0.19665 1 13040 13040 0.40827 0 1 15501 5448 10136 10139 15618 15618 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.581 1 66.044 65.544 66.544 -3.5362 0 0 0 0.1964 1 13101 13101 0.073264 0 1 15502 5448 10136 10139 15619 15619 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 71.544 1 67.916 67.416 68.416 -3.6275 0 0 0 0.1964 1 13494 13494 0.073264 0 1 15503 5448 10136 10139 15620 15620 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.267 1 70.591 70.091 71.091 -3.6764 0 0 0 0.1964 1 14042 14042 0.073264 0 1 15504 5448 10136 10139 15621 15621 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 80.469 1 76.63 76.13 77.13 -3.8392 0 0 0 0.23508 1 15273 15273 2.9952 0 1 15505 5448 10136 10139 15622 15622 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646423339844 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 110.77 1 106.28 105.78 106.78 -4.4915 0 0 0 0.1964 1 21262 21262 0.40827 0 1 15506 5448 10136 10139 15623 15623 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 132.92 1 128.07 127.57 128.57 -4.8527 0 0 0 0.1964 1 25531 25531 0.40827 0 1 15507 5448 10136 10139 15624 15624 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1651611328125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 136.87 1 131.95 131.45 132.45 -4.9216 0 0 0 0.19665 1 26308 26308 0.40827 0 1 15508 5448 10136 10139 15625 15625 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16412353515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 54.521 1 51.384 50.884 51.884 -3.1377 0 0 0 0.23508 1 10092 10092 2.9952 0 1 15509 5448 10136 10139 15626 15626 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1644287109375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 57.432 1 54.256 53.756 54.756 -3.1761 0 0 0 0.1964 1 10705 10705 0.40827 0 1 15510 5448 10136 10139 15627 15627 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 61.143 1 57.904 57.404 58.404 -3.2395 0 0 0 0.23508 1 11442 11442 2.9952 0 1 15511 5448 10136 10139 15628 15628 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 66.124 1 62.841 62.341 63.341 -3.2832 0 0 0 0.1964 1 12443 12443 0.40827 0 1 15512 5448 10136 10139 15629 15629 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1645202636719 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 68.641 1 65.251 64.751 65.751 -3.3903 0 0 0 0.23508 1 12963 12963 2.9952 0 1 15513 5448 10136 10139 15630 15630 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 71.586 1 68.084 67.584 68.584 -3.5023 0 0 0 0.1964 1 13568 13568 0.073264 0 1 15514 5448 10136 10139 15631 15631 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.338 1 70.744 70.244 71.244 -3.594 0 0 0 0.1964 1 14118 14118 0.073264 0 1 15515 5448 10136 10139 15632 15632 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 77.029 1 73.37 72.87 73.87 -3.6588 0 0 0 0.23508 1 14661 14661 5.7319 0 1 15516 5448 10136 10139 15633 15633 0.00354693631857117 FSSLSPPPP 9 Unmodified _FSSLSPPPP_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 78.237 1 74.578 74.078 75.078 -3.6588 0 0 0 0.19665 1 14904 14904 0.40827 0 1 15517 5448 10136 10139 15634 15634 0.00354693631857117 FSSNIWKWNK 10 Unmodified _FSSNIWKWNK_ 0 0 0 REV__KLRB1|p.G170S|1|0.05|ENSG00000111796|chr12:9598068-9598068|C/T|missense_variant REV__KLRB1|p.G170S|1|0.05|ENSG00000111796|chr12:9598068-9598068|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2298278808594 3 437.227779 1308.66151 NaN NaN NaN NaN NaN NaN NaN 79.573 1 75.897 75.397 76.397 -3.676 0 0 0 2.8426 1 15160 15160 3.8763 0.80407 1 + 15518 23728 10137 10140 15635 15635 0.019521946629765807 FSSPHSPPVQ 10 Unmodified _FSSPHSPPVQ_ 0 0 0 REV__ENST00000477959.1_1_3:183962361-183963122:-|nuORF REV__ENST00000477959.1_1_3:183962361-183963122:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2785034179688 2 541.766906 1081.51926 0.16138 8.7431E-05 1.0153 0.00055007 1.1767 0.0006375 541.7673271324751 61.769 0.52303 58.4 58.112 58.635 -3.3694 19 14 2 0 0 0 0.89521 1 11545 11545 10.824 2.9138 1 925690 + 15519 22127 10138 10141 15636 15636 -0.018240180791963212 FSSQIPSSVN 10 Unmodified _FSSQIPSSVN_ 0 0 0 ENSG00000186871|ENST00000334463|ERCC6L ENSG00000186871|ENST00000334463|ERCC6L ENSG00000186871|ENST00000334463|ERCC6L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2637939453125 2 533.264196 1064.51384 0.55644 0.00029673 -0.11531 -6.1488E-05 0.44114 0.00023524 533.2640865509115 34.719 0.28226 32.466 32.324 32.606 -2.2527 13 7 2 0 0 0 0.72406 1 6087 6087 8.7454 0.58988 1 600740 15520 7080 10139 10142 15637 15637 -0.015837416616705013 FSSRRQVMKE 10 Unmodified _FSSRRQVMKE_ 0 0 0 REV__ENSG00000134852|ENST00000513440|CLOCK REV__ENSG00000134852|ENST00000513440|CLOCK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 634.3519897460938 2 634.332421 1266.65029 NaN NaN NaN NaN NaN NaN NaN 166.51 1 166.51 166.01 167.01 0 0 0 0 2.8426 1 33930 33930 0.26539 0.093389 1 + 15521 16233 10140 10143 15638 15638 0.02763049297186626 FSSSTVISY 9 Unmodified _FSSSTVISY_ 0 0 0 MLF2|p.D159Gfs*28|1|0.28|ENSG00000089693|chr12:6749931-6749932|-/C|frameshift_variant;ENSG00000089693|ENST00000203630|MLF2 MLF2|p.D159Gfs*28|1|0.28|ENSG00000089693|chr12:6749931-6749932|-/C|frameshift_variant MLF2|p.D159Gfs*28|1|0.28|ENSG00000089693|chr12:6749931-6749932|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 990.38330078125 1 990.477854 989.470577 0.2377 0.00023544 -0.17676 -0.00017507 0.060942 6.0362E-05 990.4772144199893 106.7 0.41485 102.28 102.17 102.58 -4.4121 14 11 2 0 0 0 0.10297 1 20479 20479 54.774 18.729 1 1333600 15522 1768 10141 10144 15639 15639 -0.024579314389484352 FSTDDDND 8 Unmodified _FSTDDDND_ 0 0 0 SZT2|p.L1644Ffs*4|1|0.36|ENSG00000198198|chr1:43431727-43431728|-/T|frameshift_variant;SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant;SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant;nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2;SZT2|p.A1115Lfs*4|1|0.26|ENSG00000198198|chr1:43427358-43427358|G/-|frameshift_variant SZT2|p.L1644Ffs*4|1|0.36|ENSG00000198198|chr1:43431727-43431728|-/T|frameshift_variant SZT2|p.L1644Ffs*4|1|0.36|ENSG00000198198|chr1:43431727-43431728|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647644042969 3 310.110405 927.309385 -0.47177 -0.0001463 -0.16228 -5.0325E-05 -0.63405 -0.00019663 310.11189449641734 22.736 0.17929 22.736 22.609 22.788 0 6 4 2 0 0 0 1.0281 1 3831 3831 0 0 1 198520 15523 7437 10142 10145 15640 15640 -0.15717725542856442 FSTPSNLLAH 10 Unmodified _FSTPSNLLAH_ 0 0 0 REV__ENST00000561419.1_2_14:24658541-24658613:-|nuORF REV__ENST00000561419.1_2_14:24658541-24658613:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7796630859375 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 148.04 1 143.33 142.83 143.83 -4.7095 0 0 0 0.22588 1 29392 29392 10.824 0.64053 1 + 15524 23053 10143 10146 15641 15641 0.011205549548776617 FSTWHPLR 8 Unmodified _FSTWHPLR_ 0 0 0 REV__ENSG00000189227|ENST00000342683|C15orf61 REV__ENSG00000189227|ENST00000342683|C15orf61 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2732543945312 2 522.274701 1042.53485 NaN NaN NaN NaN NaN NaN NaN 160.51 1 160.51 160.01 161.01 0 0 0 0 0.2343 1 32231 32231 0.12286 0.049601 1 + 15525 19203 10144 10147 15642 15642 0.01528313228504885 FSVLEEFEKED 11 Unmodified _FSVLEEFEKED_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23883056640625 3 457.882002 1370.62418 0.42112 0.00019282 -0.33612 -0.0001539 0.085004 3.8922E-05 458.21603244523334 101.53 0.44962 97.542 97.245 97.694 -3.9911 16 12 2 0 0 0 0.96104 1 19492 19492 4.4062 0 1 442320 + 15526 17221 10145 10148 15643 15643 -0.04630986183951791 FSVLWDYI 8 Unmodified _FSVLWDYI_ 0 0 0 ENST00000523459.5_1_8:42091328-42128215:-|nuORF ENST00000523459.5_1_8:42091328-42128215:-|nuORF ENST00000523459.5_1_8:42091328-42128215:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2662353515625 2 521.765843 1041.51713 -0.87801 -0.00045812 0.45556 0.0002377 -0.42245 -0.00022042 521.7658828027867 109 0.76398 104.55 104.12 104.88 -4.4518 27 21 2 0 0 0 0.64227 1 20973 20973 19.439 4.8573 1 1553400 15527 10871 10146 10149 15644 15644 -0.00196446817017204 FSVPLGGR 8 Unmodified _FSVPLGGR_ 0 0 0 REV__ENST00000491929.1_1_13:103452763-103457688:+|nuORF REV__ENST00000491929.1_1_13:103452763-103457688:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 417.7411193847656 2 416.73742 831.460287 0.043942 1.8312E-05 0.36243 0.00015104 0.40637 0.00016935 416.73751630162553 122.44 1.0978 117.89 117.6 118.7 -4.5476 69 30 3 0 0 0 8448 1 24102 24102 0.25148 0 1 7725000 + 15528 22326 10147 10150 15645 15645 0.03781550417147628 FSWRVTKY 8 Unmodified _FSWRVTKY_ 0 0 0 REV__nc|ENSG00000278845|Q9BRJ2|MRPL45 REV__nc|ENSG00000278845|Q9BRJ2|MRPL45 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78955078125 2 543.790184 1085.56581 -0.1007 -5.4761E-05 1.8127 0.00098572 1.712 0.00093096 544.294122930991 81.402 0.2396 77.714 77.558 77.797 -3.6879 8 6 2 0 0 0 0.77935 1 15516 15516 5.2307 0 1 563810 + 15529 24311 10148 10151 15646 15646 0.026454665427536384 FTDAGFEHY 9 Unmodified _FTDAGFEHY_ 0 0 0 nc|ENSG00000079335|Q9UNH5-3|CDC14A;CDC14A|p.P551Qfs*30|1|0.33|ENSG00000079335|chr1:100499154-100499154|C/-|frameshift_variant;ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7890014648438 2 543.729989 1085.44543 0.54149 0.00029443 0.24924 0.00013552 0.79073 0.00042994 543.7297293786949 82.843 0.89403 82.843 82.432 83.326 0 60 25 3 0 0 0 0.037229 1 16152 16152 74.423 55.166 1 9565600 15530 451 10149 10152 15647 15647 -0.09387986241517865 FTDAGFEHY 9 Unmodified _FTDAGFEHY_ 0 0 0 nc|ENSG00000079335|Q9UNH5-3|CDC14A;CDC14A|p.P551Qfs*30|1|0.33|ENSG00000079335|chr1:100499154-100499154|C/-|frameshift_variant;ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7836303710938 2 543.729989 1085.44543 0.15669 8.5196E-05 1.1088 0.00060287 1.2655 0.00068807 543.7302198023641 86.865 0.73854 83.138 82.802 83.54 -3.727 53 20 3 0 0 0 0.019538 2 16952 16949;16952 92.822 49.465 1 9073400 15531 451 10149 10152 15648;15649 15649 -0.09387986241517865 FTDAGFEHY 9 Unmodified _FTDAGFEHY_ 0 0 0 nc|ENSG00000079335|Q9UNH5-3|CDC14A;CDC14A|p.P551Qfs*30|1|0.33|ENSG00000079335|chr1:100499154-100499154|C/-|frameshift_variant;ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7734985351562 2 543.729989 1085.44543 0.31363 0.00017053 0.87196 0.00047411 1.1856 0.00064464 543.7300512933942 87.007 0.80789 83.057 82.684 83.492 -3.9503 70 22 4 0 0 0 0.029847 1 16563 16563 112.59 57.82 1 10264000 15532 451 10149 10152 15650 15650 -0.09387986241517865 FTDAGFEHY 9 Unmodified _FTDAGFEHY_ 0 0 0 nc|ENSG00000079335|Q9UNH5-3|CDC14A;CDC14A|p.P551Qfs*30|1|0.33|ENSG00000079335|chr1:100499154-100499154|C/-|frameshift_variant;ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7744140625 2 543.729989 1085.44543 0.19224 0.00010452 0.85631 0.0004656 1.0485 0.00057013 543.7301486006755 86.777 0.74208 83.048 82.693 83.435 -3.7289 54 20 3 0 0 0 0.011913 1 16604 16604 100.37 58.532 1 9343700 15533 451 10149 10152 15651 15651 -0.09387986241517865 FTDEEVDELY 10 Unmodified _FTDEEVDELY_ 0 0 0 ENST00000431574.1_1_6:33306912-33307269:+|nuORF;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B ENST00000431574.1_1_6:33306912-33307269:+|nuORF ENST00000431574.1_1_6:33306912-33307269:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7711181640625 2 630.269341 1258.52413 0.39682 0.0002501 0.12046 7.5923E-05 0.51728 0.00032603 630.2692225092748 121.24 0.75908 121.24 120.82 121.58 0 41 20 3 0 0 0 0.0037976 2 23898 23898;23945 98.501 91.913 1 5443600 15534 2078 10150 10153 15652;15653 15652 -0.09479223517746505 FTDEEVDELY 10 Unmodified _FTDEEVDELY_ 0 0 0 ENST00000431574.1_1_6:33306912-33307269:+|nuORF;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B ENST00000431574.1_1_6:33306912-33307269:+|nuORF ENST00000431574.1_1_6:33306912-33307269:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.771484375 2 630.269341 1258.52413 1.0583 0.00066701 -0.66005 -0.00041601 0.39824 0.000251 630.2688297972062 126.23 0.84498 121.63 121.26 122.1 -4.5984 52 23 3 0 0 0 0.0061481 4 24899 24852;24875;24899;24946 108 61.976 1 7025300 15535 2078 10150 10153 15654;15655;15656;15657 15656 -0.09479223517746505 FTDEEVDELY 10 Unmodified _FTDEEVDELY_ 0 0 0 ENST00000431574.1_1_6:33306912-33307269:+|nuORF;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B ENST00000431574.1_1_6:33306912-33307269:+|nuORF ENST00000431574.1_1_6:33306912-33307269:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7711181640625 2 630.269341 1258.52413 0.49999 0.00031513 -0.027295 -1.7203E-05 0.47269 0.00029792 630.2691939839351 126.42 0.84307 121.63 121.29 122.13 -4.7959 52 23 3 0 0 0 0.0042429 5 24280 24234;24262;24280;24322;24336 96.285 72.878 1 4827400 15536 2078 10150 10153 15658;15659;15660;15661;15662 15660 -0.09479223517746505 FTDEEVDELY 10 Unmodified _FTDEEVDELY_ 0 0 0 ENST00000431574.1_1_6:33306912-33307269:+|nuORF;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B ENST00000431574.1_1_6:33306912-33307269:+|nuORF ENST00000431574.1_1_6:33306912-33307269:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7579956054688 2 630.269341 1258.52413 0.42926 0.00027055 0.14169 8.9303E-05 0.57095 0.00035985 630.2693901189853 126.26 0.69098 121.56 121.28 121.97 -4.6998 48 18 3 0 0 0 0.046341 2 24336 24336;24359 51.488 49.56 1 4695800 15537 2078 10150 10153 15663;15664 15663 -0.09479223517746505 FTDEEVDELY 10 Unmodified _FTDEEVDELY_ 0 0 0 ENST00000431574.1_1_6:33306912-33307269:+|nuORF;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B ENST00000431574.1_1_6:33306912-33307269:+|nuORF ENST00000431574.1_1_6:33306912-33307269:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7576904296875 2 630.269341 1258.52413 NaN NaN NaN NaN NaN NaN NaN 126.84 1 122.14 121.64 122.64 -4.6998 0 0 0 2.8426 1 24401 24401 12.228 9.5964 1 15538 2078 10150 10153 15665 15665 -0.09479223517746505 FTDGDAALEF 10 Unmodified _FTDGDAALEF_ 0 0 0 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7908325195312 2 543.242929 1084.47131 0.33566 0.00018234 0.085749 4.6583E-05 0.42141 0.00022893 543.2428169161044 134.7 0.63055 134.7 134.42 135.05 0 37 17 3 0 0 0 0.075595 1 26702 26702 71.134 31.184 1 5614300 15539 6300 10151 10154 15666 15666 -0.06755136789888638 FTDGDAALEF 10 Unmodified _FTDGDAALEF_ 0 0 0 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7868041992188 2 543.242929 1084.47131 0.26039 0.00014145 0.26823 0.00014572 0.52862 0.00028717 543.2429562230084 139.78 0.83054 135.14 134.62 135.45 -4.6439 56 23 4 0 0 0 0.13067 1 27603 27603 88.904 38.971 1 6717600 15540 6300 10151 10154 15667 15667 -0.06755136789888638 FTDGDAALEF 10 Unmodified _FTDGDAALEF_ 0 0 0 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7708129882812 2 543.242929 1084.47131 0.095938 5.2118E-05 0.11283 6.1297E-05 0.20877 0.00011341 543.2429266239116 140 0.75632 135.05 134.67 135.43 -4.952 41 21 3 0 0 0 0.069049 1 26960 26960 78.149 36.31 1 5979000 15541 6300 10151 10154 15668 15668 -0.06755136789888638 FTDGDAALEF 10 Unmodified _FTDGDAALEF_ 0 0 0 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7758178710938 2 543.242929 1084.47131 0.34639 0.00018817 -0.029751 -1.6162E-05 0.31663 0.00017201 543.2428735578314 139.87 0.8792 135.02 134.53 135.41 -4.8492 53 24 3 0 0 0 0.084089 1 26977 26977 96.285 44.016 1 3561300 15542 6300 10151 10154 15669 15669 -0.06755136789888638 FTDGSRIVF 9 Unmodified _FTDGSRIVF_ 0 0 0 nc|ENSG00000079739|P36871-3|PGM1;PGM1|p.A512Pfs*33|1|0.23|ENSG00000079739|chr1:63654398-63654398|G/-|frameshift_variant;ENSG00000079739|ENST00000371084|PGM1;nc|ENSG00000079739|P36871-2|PGM1 nc|ENSG00000079739|P36871-3|PGM1 nc|ENSG00000079739|P36871-3|PGM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2626342773438 2 521.271824 1040.5291 -0.68282 -0.00035593 0.019948 1.0398E-05 -0.66287 -0.00034553 521.2720987008792 131.33 0.61781 126.5 126.24 126.86 -4.8355 23 17 3 0 0 0 0.50979 1 25236 25236 0.12781 0 1 2067400 15543 1600 10152 10155 15670 15670 0.010451699261921021 FTDIEHLHA 9 Unmodified _FTDIEHLHA_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79638671875 2 541.766906 1081.51926 0.18089 9.8001E-05 0.20223 0.00010956 0.38312 0.00020756 541.7669614214841 86.517 1.2674 82.788 82.274 83.542 -3.7289 114 35 6 0 0 0 0.52414 1 16582 16582 18.135 3.2967 1 77529000 + 15544 19081 10153 10156 15671 15671 -0.01824018079173584 FTDIGIKY 8 Unmodified _FTDIGIKY_ 0 0 0 nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;MCF2L2|p.L366Tfs*45|1|0.31|ENSG00000053524|chr3:183309733-183309734|-/T|frameshift_variant;MCF2L2|p.R401Gfs*23|1|0.3|ENSG00000053524|chr3:183300109-183300109|G/-|frameshift_variant;ENST00000488149.5_1_3:183027559-183118319:-|nuORF;nc|ENSG00000053524|Q86YR7-3|MCF2L2;nc|ENSG00000053524|Q86YR7-2|MCF2L2 nc|ENSG00000053524|Q86YR7-4|MCF2L2 nc|ENSG00000053524|Q86YR7-4|MCF2L2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7236328125 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 105.91 1 105.91 105.41 106.41 0 0 0 0 0.14659 1 20818 20818 37.974 13.3 1 15545 1256 10154 10157 15672 15672 0.02195266665944473 FTDIGIKY 8 Unmodified _FTDIGIKY_ 0 0 0 nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;MCF2L2|p.L366Tfs*45|1|0.31|ENSG00000053524|chr3:183309733-183309734|-/T|frameshift_variant;MCF2L2|p.R401Gfs*23|1|0.3|ENSG00000053524|chr3:183300109-183300109|G/-|frameshift_variant;ENST00000488149.5_1_3:183027559-183118319:-|nuORF;nc|ENSG00000053524|Q86YR7-3|MCF2L2;nc|ENSG00000053524|Q86YR7-2|MCF2L2 nc|ENSG00000053524|Q86YR7-4|MCF2L2 nc|ENSG00000053524|Q86YR7-4|MCF2L2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.736572265625 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 106.18 1 106.18 105.68 106.68 0 0 0 0 0.078907 1 20872 20872 48.346 12.219 1 15546 1256 10154 10157 15673 15673 0.02195266665944473 FTDIGIKY 8 Unmodified _FTDIGIKY_ 0 0 0 nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;MCF2L2|p.L366Tfs*45|1|0.31|ENSG00000053524|chr3:183309733-183309734|-/T|frameshift_variant;MCF2L2|p.R401Gfs*23|1|0.3|ENSG00000053524|chr3:183300109-183300109|G/-|frameshift_variant;ENST00000488149.5_1_3:183027559-183118319:-|nuORF;nc|ENSG00000053524|Q86YR7-3|MCF2L2;nc|ENSG00000053524|Q86YR7-2|MCF2L2 nc|ENSG00000053524|Q86YR7-4|MCF2L2 nc|ENSG00000053524|Q86YR7-4|MCF2L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7271728515625 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 110.5 1 106.07 105.57 106.57 -4.4231 0 0 0 0.22674 1 21779 21779 23.79 17.598 1 15547 1256 10154 10157 15674 15674 0.02195266665944473 FTDIGIKY 8 Unmodified _FTDIGIKY_ 0 0 0 nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;MCF2L2|p.L366Tfs*45|1|0.31|ENSG00000053524|chr3:183309733-183309734|-/T|frameshift_variant;MCF2L2|p.R401Gfs*23|1|0.3|ENSG00000053524|chr3:183300109-183300109|G/-|frameshift_variant;ENST00000488149.5_1_3:183027559-183118319:-|nuORF;nc|ENSG00000053524|Q86YR7-3|MCF2L2;nc|ENSG00000053524|Q86YR7-2|MCF2L2 nc|ENSG00000053524|Q86YR7-4|MCF2L2 nc|ENSG00000053524|Q86YR7-4|MCF2L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7271728515625 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 110.53 1 106.1 105.6 106.6 -4.4231 0 0 0 0.014347 1 21783 21783 65.235 27.261 1 15548 1256 10154 10157 15675 15675 0.02195266665944473 FTDIGIKY 8 Unmodified _FTDIGIKY_ 0 0 0 nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;MCF2L2|p.L366Tfs*45|1|0.31|ENSG00000053524|chr3:183309733-183309734|-/T|frameshift_variant;MCF2L2|p.R401Gfs*23|1|0.3|ENSG00000053524|chr3:183300109-183300109|G/-|frameshift_variant;ENST00000488149.5_1_3:183027559-183118319:-|nuORF;nc|ENSG00000053524|Q86YR7-3|MCF2L2;nc|ENSG00000053524|Q86YR7-2|MCF2L2 nc|ENSG00000053524|Q86YR7-4|MCF2L2 nc|ENSG00000053524|Q86YR7-4|MCF2L2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73040771484375 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 110.61 1 106.12 105.62 106.62 -4.4915 0 0 0 0.04 1 21231 21231 71.134 20.279 1 15549 1256 10154 10157 15676 15676 0.02195266665944473 FTDIGKVDF 9 Unmodified _FTDIGKVDF_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2694091796875 2 521.266207 1040.51786 -0.38471 -0.00020054 0.81869 0.00042675 0.43397 0.00022622 521.2665781892827 125.4 0.66726 120.64 120.27 120.94 -4.7681 43 18 3 0 0 0 0.13932 1 24087 24087 45.7 3.86 1 3294900 15550 1154 10155 10158 15677 15677 -0.0007765216794268781 FTDIGKVDF 9 Unmodified _FTDIGKVDF_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.278076171875 2 521.266207 1040.51786 0.26962 0.00014054 -0.2637 -0.00013746 0.0059149 3.0832E-06 521.2661598078059 125.39 0.672 120.74 120.28 120.95 -4.6495 31 18 3 0 0 0 0.44932 1 24085 24085 22.736 2.3217 1 2768800 15551 1154 10155 10158 15678 15678 -0.0007765216794268781 FTDIGKVDF 9 Unmodified _FTDIGKVDF_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.266207 1040.51786 0.20261 0.00010562 -0.057034 -2.973E-05 0.14558 7.5885E-05 521.7678572232479 120.75 0.72014 120.75 120.35 121.07 0 0.053535 -0.0001694 NaN 45.7 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2910400 15552 1154 10155 10158 -0.0007765216794268781 FTDIGKVDF 9 Unmodified _FTDIGKVDF_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.266207 1040.51786 -0.093511 -4.8744E-05 -0.015571 -8.1168E-06 -0.10908 -5.6861E-05 521.2663435886626 125.25 0.50117 120.65 120.36 120.86 -4.5984 -0.042568 -0.00012617 NaN 45.7 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3619100 15553 1154 10155 10158 -0.0007765216794268781 FTDKCYYF 8 Unmodified _FTDKCYYF_ 0 0 0 ENST00000582147.1_1_18:320047-333168:-|nuORF;COLEC12|p.K656Nfs*4|2|0.27|ENSG00000158270|chr18:331763-331763|T/-|frameshift_variant;ENSG00000158270|ENST00000400256|COLEC12 ENST00000582147.1_1_18:320047-333168:-|nuORF ENST00000582147.1_1_18:320047-333168:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78125 2 543.733686 1085.45282 0.19753 0.00010741 0.57077 0.00031035 0.76831 0.00041775 543.7340259284388 84.055 0.47954 80.447 80.15 80.63 -3.6079 20 13 2 0 0 0 0.6199 1 16392 16392 20.871 5.103 1 1168300 15554 633 10156 10159 15679 15679 -0.08648969965452125 FTDKCYYF 8 Unmodified _FTDKCYYF_ 0 0 0 ENST00000582147.1_1_18:320047-333168:-|nuORF;COLEC12|p.K656Nfs*4|2|0.27|ENSG00000158270|chr18:331763-331763|T/-|frameshift_variant;ENSG00000158270|ENST00000400256|COLEC12 ENST00000582147.1_1_18:320047-333168:-|nuORF ENST00000582147.1_1_18:320047-333168:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.779541015625 2 543.733686 1085.45282 0.17891 9.7277E-05 0.61814 0.0003361 0.79705 0.00043338 544.2354401617014 84.294 0.65544 80.385 80.008 80.664 -3.9093 26 18 2 0 0 0 0.83439 1 15977 15977 20.871 18.568 1 1487100 15555 633 10156 10159 15680 15680 -0.08648969965452125 FTDKKTHLY 9 Unmodified _FTDKKTHLY_ 0 0 0 CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.322509765625 2 576.806031 1151.59751 0.8867 0.00051145 0.02861 1.6502E-05 0.91531 0.00052796 576.8061359258488 27.969 0.97692 26.012 25.525 26.502 -1.9561 64 27 3 0 0 0 0.01376 1 4987 4987 128.93 90.757 1 8903200 15556 380 10157 10160 15681 15681 0.027774145060675437 FTDKKTHLY 9 Unmodified _FTDKKTHLY_ 0 0 0 CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.806031 1151.59751 0.3601 0.00020771 0.19978 0.00011523 0.55988 0.00032294 576.806089781443 26.01 0.82696 26.01 25.632 26.459 0 0.023026 -7.366E-05 NaN 128.93 75 23 4 NaN NaN NaN NaN 0 NaN NaN 0 18460000 15557 380 10157 10160 0.027774145060675437 FTDKKTHLY 9 Unmodified _FTDKKTHLY_ 0 0 0 CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.806031 1151.59751 0.34872 0.00020114 0.33867 0.00019535 0.68739 0.00039649 576.8062138873256 27.744 0.94822 25.989 25.513 26.461 -1.7552 0.0014997 8.6567E-05 NaN 128.93 78 26 4 NaN NaN NaN NaN 0 NaN NaN 0 10932000 15558 380 10157 10160 0.027774145060675437 FTDPRAYLKY 10 Unmodified _FTDPRAYLKY_ 0 0 0 ENSG00000026652|ENST00000320285|AGPAT4;AGPAT4|p.R303Gfs*7|1|0.33|ENSG00000026652|chr6:161139557-161139557|G/-|frameshift_variant ENSG00000026652|ENST00000320285|AGPAT4 ENSG00000026652|ENST00000320285|AGPAT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24365234375 3 425.224034 1272.65027 0.09812 4.1723E-05 0.088519 3.764E-05 0.18664 7.9364E-05 425.2239933714048 124.25 1.407 124.25 123.42 124.83 0 97 39 3 0 0 0 0.11752 2 24466 24466;24545 55.249 28.16 1 10533000 15559 1144 10158 10161 15682;15683 15682 0.024853725688444683 FTDPRAYLKY 10 Unmodified _FTDPRAYLKY_ 0 0 0 ENSG00000026652|ENST00000320285|AGPAT4;AGPAT4|p.R303Gfs*7|1|0.33|ENSG00000026652|chr6:161139557-161139557|G/-|frameshift_variant ENSG00000026652|ENST00000320285|AGPAT4 ENSG00000026652|ENST00000320285|AGPAT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.248291015625 3 425.224034 1272.65027 -0.1115 -4.7413E-05 0.21421 9.1088E-05 0.10271 4.3675E-05 425.2240955063658 128.85 1.2643 124.22 123.47 124.74 -4.6292 91 35 3 0 0 0 0.097962 2 25397 25397;25434 60.899 39.1 1 7024300 15560 1144 10158 10161 15684;15685 15684 0.024853725688444683 FTDPRAYLKY 10 Unmodified _FTDPRAYLKY_ 0 0 0 ENSG00000026652|ENST00000320285|AGPAT4;AGPAT4|p.R303Gfs*7|1|0.33|ENSG00000026652|chr6:161139557-161139557|G/-|frameshift_variant ENSG00000026652|ENST00000320285|AGPAT4 ENSG00000026652|ENST00000320285|AGPAT4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 425.224034 1272.65027 0.074825 3.1817E-05 0.091192 3.8777E-05 0.16602 7.0595E-05 425.2240285121485 129 1.2332 124.19 123.48 124.72 -4.817 -0.064903 -0.00012819 NaN 60.899 96 34 3 NaN NaN NaN NaN 0 NaN NaN 0 8097400 15561 1144 10158 10161 0.024853725688444683 FTDPRAYLKY 10 Unmodified _FTDPRAYLKY_ 0 0 0 ENSG00000026652|ENST00000320285|AGPAT4;AGPAT4|p.R303Gfs*7|1|0.33|ENSG00000026652|chr6:161139557-161139557|G/-|frameshift_variant ENSG00000026652|ENST00000320285|AGPAT4 ENSG00000026652|ENST00000320285|AGPAT4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 425.224034 1272.65027 -0.11081 -4.7119E-05 0.34478 0.00014661 0.23397 9.9492E-05 425.22413871206976 129.09 1.3316 124.34 123.56 124.89 -4.7408 0.09438 0.00019531 NaN 60.899 97 37 3 NaN NaN NaN NaN 0 NaN NaN 0 7157800 15562 1144 10158 10161 0.024853725688444683 FTDPRTMGY 9 Unmodified _FTDPRTMGY_ 0 0 0 ENST00000567697.1_1_16:8904837-8941679:+|nuORF;ENSG00000140650|ENST00000268261|PMM2 ENST00000567697.1_1_16:8904837-8941679:+|nuORF ENST00000567697.1_1_16:8904837-8941679:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7713012695312 2 544.247492 1086.48043 0.7243 0.0003942 -0.77725 -0.00042302 -0.052946 -2.8816E-05 544.247144639981 80.362 1.1182 80.362 79.793 80.911 0 94 31 4 0 0 0 0.03086 1 15608 15608 80.676 23.205 1 22190000 15563 4318 10159 10162 15686 15686 -0.05935066705205827 FTDPRTMGY 9 Unmodified _FTDPRTMGY_ 0 0 0 ENST00000567697.1_1_16:8904837-8941679:+|nuORF;ENSG00000140650|ENST00000268261|PMM2 ENST00000567697.1_1_16:8904837-8941679:+|nuORF ENST00000567697.1_1_16:8904837-8941679:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7919311523438 2 544.247492 1086.48043 0.18621 0.00010134 -0.012478 -6.7911E-06 0.17373 9.4554E-05 544.2475414099284 84.385 1.6847 80.721 80.025 81.709 -3.6641 132 48 4 0 0 0 0.02936 1 16493 16493 107.1 49.628 1 25513000 15564 4318 10159 10162 15687 15687 -0.05935066705205827 FTDPRTMGY 9 Unmodified _FTDPRTMGY_ 0 0 0 ENST00000567697.1_1_16:8904837-8941679:+|nuORF;ENSG00000140650|ENST00000268261|PMM2 ENST00000567697.1_1_16:8904837-8941679:+|nuORF ENST00000567697.1_1_16:8904837-8941679:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79541015625 2 544.247492 1086.48043 0.19891 0.00010826 -0.062235 -3.3871E-05 0.13668 7.4387E-05 544.2475136447433 84.59 1.493 80.68 80.074 81.567 -3.9093 118 42 4 0 0 0 0.03086 1 16093 16093 100.09 51.745 1 25983000 15565 4318 10159 10162 15688 15688 -0.05935066705205827 FTDPRTMGY 9 Unmodified _FTDPRTMGY_ 0 0 0 ENST00000567697.1_1_16:8904837-8941679:+|nuORF;ENSG00000140650|ENST00000268261|PMM2 ENST00000567697.1_1_16:8904837-8941679:+|nuORF ENST00000567697.1_1_16:8904837-8941679:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.791748046875 2 544.247492 1086.48043 0.063925 3.4791E-05 0.13158 7.1611E-05 0.1955 0.0001064 544.2476288952142 84.371 1.5031 80.66 80.026 81.529 -3.7117 117 42 4 0 0 0 0.027537 1 16147 16147 110.55 53.081 1 22262000 15566 4318 10159 10162 15689 15689 -0.05935066705205827 FTDRRLIY 8 Unmodified _FTDRRLIY_ 0 0 0 L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|31|2|sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|31|2|sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|31|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.3563842773438 2 542.300916 1082.58728 0.10753 5.8315E-05 0.28198 0.00015292 0.38951 0.00021123 542.3010575927211 140.68 0.84331 135.69 135.25 136.1 -4.9877 54 23 3 0 0 0 0.72861 1 27006 27006 10.183 4.423 1 10092000 15567 12064 10160 10163 15690 15690 0.049288515714806636 FTDRRLIY 8 Unmodified _FTDRRLIY_ 0 0 0 L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|31|2|sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|31|2|sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|31|2|sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.300916 1082.58728 0.33343 0.00018082 0.86845 0.00047096 1.2019 0.00065178 542.3010077230799 135.64 0.69023 135.64 135.33 136.02 0 -0.044098 0.00065846 NaN 10.183 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7610500 15568 12064 10160 10163 0.049288515714806636 FTDRRLIY 8 Unmodified _FTDRRLIY_ 0 0 0 L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|31|2|sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|31|2|sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|31|2|sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.300916 1082.58728 0.26649 0.00014452 0.074356 4.0323E-05 0.34085 0.00018484 542.3008955110349 140.37 0.7437 135.72 135.31 136.06 -4.6459 0.037657 -0.00020282 NaN 10.183 52 20 3 NaN NaN NaN NaN 0 NaN NaN 0 13881000 15569 12064 10160 10163 0.049288515714806636 FTDRRLIY 8 Unmodified _FTDRRLIY_ 0 0 0 L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|31|2|sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|31|2|sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|31|2|sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.300916 1082.58728 0.35299 0.00019143 0.24703 0.00013396 0.60002 0.00032539 542.3010008619716 140.55 0.87143 135.69 135.17 136.05 -4.8678 -0.00062759 -1.5542E-05 NaN 10.183 50 24 3 NaN NaN NaN NaN 0 NaN NaN 0 12164000 15570 12064 10160 10163 0.049288515714806636 FTDRSGLYER 10 Unmodified _FTDRSGLYER_ 0 0 0 DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1 DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.767822265625 2 622.306926 1242.5993 0.62837 0.00039104 -0.2878 -0.0001791 0.34057 0.00021194 622.3066684195759 42.712 0.39188 42.712 42.491 42.883 0 23 10 3 0 0 0 0.42569 1 8000 8000 29.082 0 1 1907700 15571 835 10161 10164 15691 15691 -0.012295764760210659 FTDRSGLYER 10 Unmodified _FTDRSGLYER_ 0 0 0 DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1 DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 622.306926 1242.5993 0.093676 5.8295E-05 0.19767 0.00012301 0.29135 0.00018131 622.3069506649058 45.87 0.59082 43.003 42.607 43.198 -2.8665 0.091754 0.00061549 NaN 29.082 27 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2453900 15572 835 10161 10164 -0.012295764760210659 FTDSDQMSADK 11 Unmodified _FTDSDQMSADK_ 0 0 0 REV__ENST00000545000.1_1_5:64180068-64314145:+|nuORF REV__ENST00000545000.1_1_5:64180068-64314145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7572021484375 2 622.758617 1243.50268 NaN NaN NaN NaN NaN NaN NaN 63.149 1 60.152 59.652 60.652 -2.9975 0 0 0 0.22862 1 12194 12194 9.3831 0 1 + 15573 17130 10162 10165 15692 15692 -0.10932931818115321 FTDTEGLPY 9 Unmodified _FTDTEGLPY_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26904296875 2 521.740022 1041.46549 0.32842 0.00017135 0.24088 0.00012567 0.5693 0.00029703 521.7400775970345 108.73 0.49812 108.73 108.49 108.98 0 23 13 2 0 0 0 0.17664 1 21414 21414 18.614 17.739 1 1752500 15574 2136 10163 10166 15693 15693 -0.05358235301559944 FTDTEGLPY 9 Unmodified _FTDTEGLPY_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.272705078125 2 521.740022 1041.46549 -0.35691 -0.00018622 1.6913 0.00088239 1.3343 0.00069618 521.7406619033675 113.64 0.35089 109.18 108.86 109.22 -4.4538 14 9 2 0 0 0 0.65155 1 22362 22362 21.747 0 1 1449600 15575 2136 10163 10166 15694 15694 -0.05358235301559944 FTDTEGLPY 9 Unmodified _FTDTEGLPY_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2799682617188 2 521.740022 1041.46549 0.61478 0.00032076 -0.23811 -0.00012423 0.37667 0.00019652 521.7395821427453 113.31 0.3884 109.04 108.88 109.27 -4.2725 20 10 2 0 0 0 0.60698 1 21856 21856 16.942 0 1 1080200 15576 2136 10163 10166 15695 15695 -0.05358235301559944 FTEHQQAAY 9 Unmodified _FTEHQQAAY_ 0 0 0 REV__nc|ENSG00000139697|A3KN83-3|SBNO1 REV__nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7761840820312 2 547.748713 1093.48287 0.077029 4.2192E-05 0.53029 0.00029047 0.60732 0.00033266 547.7491477800253 42.953 0.31812 40.234 40.022 40.34 -2.7191 11 8 2 0 0 0 0.19359 1 8045 8045 56.177 35.723 1 1844800 + 15577 16537 10164 10167 15696 15696 -0.060128949759018724 FTEHQQAAY 9 Unmodified _FTEHQQAAY_ 0 0 0 REV__nc|ENSG00000139697|A3KN83-3|SBNO1 REV__nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7761840820312 2 547.748713 1093.48287 0.060209 3.2979E-05 0.80908 0.00044317 0.86929 0.00047615 547.7490269095954 42.905 0.44372 40.299 40.004 40.448 -2.606 18 12 2 0 0 0 0.086188 1 7712 7712 65.235 65.235 1 1645700 + 15578 16537 10164 10167 15697 15697 -0.060128949759018724 FTEHVAEKHIY 11 Unmodified _FTEHVAEKHIY_ 0 0 0 ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-4|CACUL1;nc|ENSG00000151893|Q86Y37-2|CACUL1;ENSG00000151893|ENST00000369151|CACUL1 ENST00000481360.1_1_10:120454563-120467024:-|nuORF ENST00000481360.1_1_10:120454563-120467024:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2344055175781 3 458.56646 1372.67755 0.44748 0.0002052 -0.37983 -0.00017418 0.067647 3.1021E-05 458.5662671940696 41.571 0.59164 41.571 41.269 41.861 0 29 14 3 0 0 0 0.47027 3 7757 7752;7757;7758 21.241 12.143 1 2145300 15579 4895 10165 10168 15698;15699;15700 15699 0.0061185610925349465 FTEHVAEKHIY 11 Unmodified _FTEHVAEKHIY_ 0 0 0 ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-4|CACUL1;nc|ENSG00000151893|Q86Y37-2|CACUL1;ENSG00000151893|ENST00000369151|CACUL1 ENST00000481360.1_1_10:120454563-120467024:-|nuORF ENST00000481360.1_1_10:120454563-120467024:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2349548339844 3 458.56646 1372.67755 -0.13183 -6.0452E-05 -0.11076 -5.0789E-05 -0.24258 -0.00011124 458.56651140049985 44.463 0.73293 41.673 41.186 41.919 -2.79 40 20 3 0 0 0 0.4682 2 8371 8371;8386 39.413 32.376 1 2424700 15580 4895 10165 10168 15701;15702 15701 0.0061185610925349465 FTEHVAEKHIY 11 Unmodified _FTEHVAEKHIY_ 0 0 0 ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-4|CACUL1;nc|ENSG00000151893|Q86Y37-2|CACUL1;ENSG00000151893|ENST00000369151|CACUL1 ENST00000481360.1_1_10:120454563-120467024:-|nuORF ENST00000481360.1_1_10:120454563-120467024:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2344970703125 3 458.56646 1372.67755 -0.082577 -3.7867E-05 0.25546 0.00011715 0.17288 7.9278E-05 458.5664811659679 44.613 0.65167 41.847 41.36 42.012 -2.7661 33 13 3 0 0 0 0.47027 2 8047 8047;8049 12.175 12.143 1 2525300 15581 4895 10165 10168 15703;15704 15703 0.0061185610925349465 FTEHVAEKHIY 11 Unmodified _FTEHVAEKHIY_ 0 0 0 ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-4|CACUL1;nc|ENSG00000151893|Q86Y37-2|CACUL1;ENSG00000151893|ENST00000369151|CACUL1 ENST00000481360.1_1_10:120454563-120467024:-|nuORF ENST00000481360.1_1_10:120454563-120467024:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2348937988281 3 458.56646 1372.67755 -0.091011 -4.1734E-05 -0.016567 -7.597E-06 -0.10758 -4.9331E-05 458.5665073254248 44.509 0.56508 41.761 41.464 42.029 -2.7475 35 15 3 0 0 0 0.57626 1 8063 8063 31.446 27.853 1 1835600 15582 4895 10165 10168 15705 15705 0.0061185610925349465 FTEKEHKAY 9 Unmodified _FTEKEHKAY_ 0 0 0 REV__tr|U7SQV6|U7SQV6_FUSNULemAproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01597PE=3SV=1 REV__tr|U7SQV6|U7SQV6_FUSNULemAproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01597PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32958984375 2 576.787838 1151.56112 NaN NaN NaN NaN NaN NaN NaN 100.24 1 96.081 95.581 96.581 -4.1594 0 0 0 0.21848 1 19698 19698 18.135 4.2289 1 + 15583 25019 10166 10169 15706 15706 -0.008594623906901688 FTEKEQHY 8 Unmodified _FTEKEQHY_ 0 0 0 REV__ENST00000234170.9_1_2:37428958-37429009:-|nuORF REV__ENST00000234170.9_1_2:37428958-37429009:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2659912109375 2 541.251089 1080.48762 NaN NaN NaN NaN NaN NaN NaN 107.84 1 103.7 103.2 104.2 -4.135 0 0 0 0.22676 1 20745 20745 0.68139 0.65211 1 + 15584 20074 10167 10170 15707 15707 -0.04940010833138331 FTEPDQEWK 9 Unmodified _FTEPDQEWK_ 0 0 0 REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2595825195312 2 590.269478 1178.5244 NaN NaN NaN NaN NaN NaN NaN 133.03 1 128.18 127.68 128.68 -4.8527 0 0 0 0.22962 1 25554 25554 14.838 2.3067 1 + 15585 19392 10168 10171 15708 15708 -0.05771759007234323 FTERLVAEQS 10 Unmodified _FTERLVAEQS_ 0 0 0 ENSG00000198650|ENST00000355962|TAT ENSG00000198650|ENST00000355962|TAT ENSG00000198650|ENST00000355962|TAT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2689819335938 2 590.303852 1178.59315 NaN NaN NaN NaN NaN NaN NaN 132.8 1 128.16 127.66 128.66 -4.6399 0 0 0 0.22583 1 26181 26181 13.906 2.2658 1 15586 7468 10169 10172 15709 15709 0.010999052924717034 FTGHMTLL 8 Unmodified _FTGHMTLL_ 0 0 0 REV__ENSG00000232258|ENST00000620492|TMEM114 REV__ENSG00000232258|ENST00000620492|TMEM114 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2394104003906 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 34.775 1 32.522 32.022 33.022 -2.2527 0 0 0 0.23899 1 6108 6108 1.3295 0 1 + 15587 19750 10170 10173 15710 15710 0.000830574796395922 FTGPVTFSPE 10 Unmodified _FTGPVTFSPE_ 0 0 0 nc|ENSG00000196711|Q6UXT8-2|ALKAL1;ENSG00000196711|ENST00000358543|ALKAL1 nc|ENSG00000196711|Q6UXT8-2|ALKAL1 nc|ENSG00000196711|Q6UXT8-2|ALKAL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2635498046875 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 107.83 1 107.83 107.33 108.33 0 0 0 0 0.22583 1 21203 21203 13.906 0.86358 1 15588 7304 10171 10174 15711 15711 -0.02425956030560883 FTGVGKKGQ 9 Unmodified _FTGVGKKGQ_ 0 0 0 ENST00000466556.5_1_9:131588609-131591411:-|nuORF;ENSG00000198917|ENST00000361256|SPOUT1 ENST00000466556.5_1_9:131588609-131591411:-|nuORF ENST00000466556.5_1_9:131588609-131591411:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5237121582031 2 461.261259 920.507966 NaN NaN NaN NaN NaN NaN NaN 29.617 1 29.617 29.117 30.117 0 0 0 0 0.23508 1 5298 5298 10.824 1.4765 1 15589 7524 10172 10175 15712 15712 0.0445320461733445 FTGVNLLVGTE 11 Unmodified _FTGVNLLVGTE_ 0 0 0 ENST00000484051.5_1_3:170784284-170800202:-|nuORF ENST00000484051.5_1_3:170784284-170800202:-|nuORF ENST00000484051.5_1_3:170784284-170800202:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3135986328125 2 575.311146 1148.60774 0.17764 0.0001022 0.13437 7.7302E-05 0.31201 0.0001795 575.3111835120966 95.765 0.69356 95.765 95.456 96.149 0 56 19 4 0 0 0 0.57511 1 18731 18731 19.362 0.98885 1 11543000 15590 10425 10173 10176 15713 15713 0.03937977440614304 FTHDNQHW 8 Unmodified _FTHDNQHW_ 0 0 0 ARFGEF2-SULF2|2|fusion;ARFGEF2-SULF2|1|fusion;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2;ENST00000433632.1_1_20:46290355-46292296:-|nuORF ARFGEF2-SULF2|2|fusion ARFGEF2-SULF2|2|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7738647460938 2 542.733397 1083.45224 0.30769 0.000167 -1.1578 -0.0006284 -0.85014 -0.0004614 542.7326667414335 37.642 0.65643 35.305 34.946 35.602 -2.3375 31 18 3 0 0 0 0.68128 2 6667 6654;6667 16.942 2.104 1 1326900 15591 199 10174 10177 15714;15715 15715 -0.08614628570285277 FTIKLKVKLI 10 Unmodified _FTIKLKVKLI_ 0 0 0 REV__ENST00000426911.2_1_X:136058956-136065632:-|nuORF REV__ENST00000426911.2_1_X:136058956-136065632:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2981567382812 2 601.915384 1201.81622 NaN NaN NaN NaN NaN NaN NaN 107.34 1 102.93 102.43 103.43 -4.4121 0 0 0 0.22588 1 20593 20593 0.40072 0.050084 1 + 15592 21572 10175 10178 15716 15716 0.22338050815505994 FTIRFFTL 8 Unmodified _FTIRFFTL_ 0 0 0 ENST00000534161.5_1_11:418373-429524:-|nuORF;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000532094.5_1_11:420655-431830:-|nuORF;ENST00000526142.5_1_11:419653-429752:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ANO9|p.D688Ifs*44|1|0.15|ENSG00000185101|chr11:418789-418789|G/-|frameshift_variant;ENSG00000185101|ENST00000332826|ANO9 ENST00000534161.5_1_11:418373-429524:-|nuORF ENST00000534161.5_1_11:418373-429524:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2803344726562 2 522.797478 1043.5804 0.26011 0.00013599 3.7308 0.0019504 3.9909 0.0020864 522.799431032857 134.21 0.10461 129.39 129.34 129.44 -4.8175 4 2 2 0 0 0 0.89552 1 25828 25828 4.756 0 1 686890 15593 11002 10176 10179 15717 15717 0.0603553869091229 FTISPRRRF 9 Unmodified _FTISPRRRF_ 0 0 0 ENST00000237654.8_1_4:77996857-77997100:-|nuORF ENST00000237654.8_1_4:77996857-77997100:-|nuORF ENST00000237654.8_1_4:77996857-77997100:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2521362304688 2 590.340907 1178.66726 NaN NaN NaN NaN NaN NaN NaN 71.616 1 68.367 67.867 68.867 -3.2492 0 0 0 0.23508 1 13948 13948 4.756 0.81161 1 15594 8172 10177 10180 15718 15718 0.0850733796530676 FTKEEWKL 8 Unmodified _FTKEEWKL_ 0 0 0 ENST00000467975.2_1_10:38242072-38260728:-|nuORF;ENSG00000175395|ENST00000302609|ZNF25 ENST00000467975.2_1_10:38242072-38260728:-|nuORF ENST00000467975.2_1_10:38242072-38260728:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2791748046875 2 540.78985 1079.56515 0.29965 0.00016205 -2.7868 -0.0015071 -2.4872 -0.001345 540.7878146879608 135.21 0.59636 130.38 130.1 130.7 -4.8307 26 16 3 0 0 0 0.58903 1 26038 26038 30.225 6.2042 1 2125800 15595 6406 10178 10181 15719 15719 0.028546271030336356 FTKFMSTRY 9 Unmodified _FTKFMSTRY_ 0 0 0 REV__nc|ENSG00000119596|P49750-3|YLPM1 REV__nc|ENSG00000119596|P49750-3|YLPM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2568359375 2 590.794609 1179.57467 0.41366 0.00024439 1.8661 0.0011025 2.2798 0.0013469 590.7954969719618 58.673 0.60117 55.763 55.509 56.11 -2.9105 26 16 2 0 0 0 0.84208 1 11229 11229 11.64 8.9051 1 821930 + 15596 15584 10179 10182 15720 15720 -0.007939278830690455 FTKFMSTRY 9 Unmodified _FTKFMSTRY_ 0 0 0 REV__nc|ENSG00000119596|P49750-3|YLPM1 REV__nc|ENSG00000119596|P49750-3|YLPM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 590.794609 1179.57467 0.21597 0.00012759 2.1274 0.0012568 2.3433 0.0013844 590.7957152885901 55.627 0.42159 55.627 55.516 55.938 0 -0.10718 0.00030499 NaN 11.64 12 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1176600 + 15597 15584 10179 10182 -0.007939278830690455 FTKFMSTRY 9 Unmodified _FTKFMSTRY_ 0 0 0 REV__nc|ENSG00000119596|P49750-3|YLPM1 REV__nc|ENSG00000119596|P49750-3|YLPM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 590.794609 1179.57467 0.12068 7.1299E-05 1.9661 0.0011615 2.0868 0.0012328 590.7959103835016 58.971 0.5977 55.766 55.503 56.1 -3.2052 0.031469 0.00011442 NaN 11.64 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 889330 + 15598 15584 10179 10182 -0.007939278830690455 FTKIEDNI 8 Unmodified _FTKIEDNI_ 0 0 0 tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1 tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1 tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2586975097656 2 490.258382 978.502212 0.25356 0.00012431 0.23889 0.00011712 0.49245 0.00024143 490.2583396192357 97.556 0.26864 93.322 93.124 93.392 -4.2348 13 7 2 0 0 0 0.58432 1 18618 18618 23.148 1.4018 1 812620 15599 26132 10180 10183 15721 15721 0.012100613149868877 FTKIEDNI 8 Unmodified _FTKIEDNI_ 0 0 0 tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1 tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1 tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 490.258382 978.502212 -0.25333 -0.0001242 1.6164 0.00079246 1.3631 0.00066827 490.25846027427804 97.198 0.27211 93.278 93.091 93.363 -3.9194 -0.020417 0.0013642 NaN 23.148 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1222800 15600 26132 10180 10183 0.012100613149868877 FTKLEMLFRKR 11 Unmodified _FTKLEMLFRKR_ 0 0 0 REV__tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1 REV__tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2669677734375 3 490.286751 1467.83842 NaN NaN NaN NaN NaN NaN NaN 152.46 1 147.71 147.21 148.21 -4.7523 0 0 0 0.22632 1 30297 30297 0.026206 0 1 + 15601 25439 10181 10184 15722 15722 0.12321907221576112 FTKLEMLFRKR 11 Unmodified _FTKLEMLFRKR_ 0 0 0 REV__tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1 REV__tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2698669433594 3 490.286751 1467.83842 NaN NaN NaN NaN NaN NaN NaN 128.1 1 123.36 122.86 123.86 -4.7408 0 0 0 0.22632 1 24649 24649 0.172 0 1 + 15602 25439 10181 10184 15723 15723 0.12321907221576112 FTKLEMLFRKR 11 Unmodified _FTKLEMLFRKR_ 0 0 0 REV__tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1 REV__tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25738525390625 3 490.286751 1467.83842 NaN NaN NaN NaN NaN NaN NaN 157.9 1 152.63 152.13 153.13 -5.2712 0 0 0 0.22632 1 30630 30630 0.026206 0.02025 1 + 15603 25439 10181 10184 15724 15724 0.12321907221576112 FTKLNESTF 9 Unmodified _FTKLNESTF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7764282226562 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 95.82 1 91.939 91.439 92.439 -3.881 0 0 0 0.18691 1 18388 18388 4.7159 3.024 1 15604 7917 10182 10185 15725 15725 -2.2671392343909247E-05 FTLDTSSRA 9 Unmodified _FTLDTSSRA_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.2062683105469 3 333.169818 996.487624 NaN NaN NaN NaN NaN NaN NaN 118.75 1 118.75 118.25 119.25 0 0 0 0 0.23508 1 23391 23391 0.96228 0 1 15605 6711 10183 10186 15726 15726 -0.01076010833151031 FTLEKDPIN 9 Unmodified _FTLEKDPIN_ 0 0 0 ZSCAN12|p.K467Nfs*109|1|0.22|ENSG00000158691|chr6:28390889-28390889|T/-|frameshift_variant ZSCAN12|p.K467Nfs*109|1|0.22|ENSG00000158691|chr6:28390889-28390889|T/-|frameshift_variant ZSCAN12|p.K467Nfs*109|1|0.22|ENSG00000158691|chr6:28390889-28390889|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2125244140625 3 359.525602 1075.55498 0.2356 8.4706E-05 -0.08175 -2.9391E-05 0.15385 5.5315E-05 359.5255321648981 65.518 1.3984 62.06 61.333 62.731 -3.4581 116 39 4 0 0 0 0.60308 1 12308 12308 12.873 0.69786 1 21360000 15606 26640 10184 10187 15727 15727 0.020220193778186513 FTLIKKLMILM 11 Unmodified _FTLIKKLMILM_ 0 0 0 ENST00000478522.1_1_20:16710709-16713038:+|nuORF ENST00000478522.1_1_20:16710709-16713038:+|nuORF ENST00000478522.1_1_20:16710709-16713038:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 675.9161987304688 2 675.916213 1349.81787 NaN NaN NaN NaN NaN NaN NaN 168.05 1 163.16 162.66 163.66 -4.8916 0 0 0 0.22632 1 33106 33106 0.00056442 0 1 15607 10322 10185 10188 15728 15728 0.15695600517574348 FTLLYQFWIHT 11 Unmodified _FTLLYQFWIHT_ 0 0 0 AGMO|p.N193T|1|0.39|ENSG00000187546|chr7:15418589-15418589|T/G|missense_variant AGMO|p.N193T|1|0.39|ENSG00000187546|chr7:15418589-15418589|T/G|missense_variant AGMO|p.N193T|1|0.39|ENSG00000187546|chr7:15418589-15418589|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.257568359375 3 490.258967 1467.75507 NaN NaN NaN NaN NaN NaN NaN 46.039 1 43.198 42.698 43.698 -2.8409 0 0 0 0.22632 1 8685 8685 1.4551 0 1 15608 97 10186 10189 15729 15729 0.03990494045410742 FTLPMMLTL 9 Unmodified _FTLPMMLTL_ 0 0 0 PRPF8|p.S236L|1|0.37|ENSG00000174231|chr17:1681637-1681637|G/A|missense_variant PRPF8|p.S236L|1|0.37|ENSG00000174231|chr17:1681637-1681637|G/A|missense_variant PRPF8|p.S236L|1|0.37|ENSG00000174231|chr17:1681637-1681637|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2611694335938 2 533.787407 1065.56026 0.10552 5.6324E-05 2.632 0.0014049 2.7375 0.0014612 534.291049743455 137.39 1.0532 132.75 132.41 133.46 -4.6413 36 29 2 0 0 0 0.44262 1 27067 27067 23.148 2.2772 1 5043200 15609 12834 10187 10190 15730 15730 0.030102836444257264 FTLPPGPEA 9 Unmodified _FTLPPGPEA_ 0 0 0 ENST00000358994.8_1_9:131909974-131910454:+|nuORF ENST00000358994.8_1_9:131909974-131910454:+|nuORF ENST00000358994.8_1_9:131909974-131910454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700744628906 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 111.55 1 111.55 111.05 112.05 0 0 0 0 0.23508 1 21944 21944 0.96228 0 1 15610 8995 10188 10191 15731 15731 0.00354693631857117 FTLRKKSHY 9 Unmodified _FTLRKKSHY_ 0 0 0 ENST00000005386.7_1_12:48060810-48061552:-|nuORF ENST00000005386.7_1_12:48060810-48061552:-|nuORF ENST00000005386.7_1_12:48060810-48061552:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2670288085938 2 590.33529 1178.65603 NaN NaN NaN NaN NaN NaN NaN 92.835 1 88.991 88.491 89.491 -3.844 0 0 0 0.23508 1 17791 17791 8.5933 0 1 15611 8065 10189 10192 15732 15732 0.0738451587117197 FTLRKKSHY 9 Unmodified _FTLRKKSHY_ 0 0 0 ENST00000005386.7_1_12:48060810-48061552:-|nuORF ENST00000005386.7_1_12:48060810-48061552:-|nuORF ENST00000005386.7_1_12:48060810-48061552:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2561645507812 2 590.33529 1178.65603 NaN NaN NaN NaN NaN NaN NaN 92.862 1 89.018 88.518 89.518 -3.844 0 0 0 0.23508 1 17797 17797 8.5933 0 1 15612 8065 10189 10192 15733 15733 0.0738451587117197 FTLSWDFNG 9 Unmodified _FTLSWDFNG_ 0 0 0 REV__GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant REV__GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.770263671875 2 543.748182 1085.48181 NaN NaN NaN NaN NaN NaN NaN 128.92 1 128.92 128.42 129.42 0 0 0 0 0.22251 1 25462 25462 16.942 1.0951 1 + 15613 16528 10190 10193 15734 15734 -0.057511093448283646 FTNAITDLIS 10 Unmodified _FTNAITDLIS_ 0 0 0 nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2;ENSG00000005075|ENST00000292614|POLR2J;ENST00000427076.5_1_7:44053248-44058742:-|nuORF;ENST00000326391.6_1_7:44054045-44058742:-|nuORF nc|ENSG00000285437|Q9H1A7|POLR2J3 nc|ENSG00000285437|Q9H1A7|POLR2J3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7908935546875 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 43.072 1 40.466 39.966 40.966 -2.606 0 0 0 0.22583 1 7764 7764 13.906 4.5229 1 15614 983 10191 10194 15735 15735 0.022500020322468117 FTPGDLTKVS 10 Unmodified _FTPGDLTKVS_ 0 0 0 REV__ENST00000409998.5_1_2:188252479-188312774:-|nuORF REV__ENST00000409998.5_1_2:188252479-188312774:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2869262695312 2 532.784764 1063.55498 0.61767 0.00032909 -0.25261 -0.00013459 0.36507 0.0001945 532.7847226837866 93.54 0.50236 89.396 89.115 89.617 -4.1435 26 14 2 0 0 0 0.67319 1 17802 17802 13.906 0.86358 1 2893700 + 15615 21421 10192 10195 15736 15736 0.025740193777892273 FTPKKFIY 8 Unmodified _FTPKKFIY_ 0 0 0 REV__ENST00000486143.1_1_3:36422177-36500751:+|nuORF REV__ENST00000486143.1_1_3:36422177-36500751:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2698364257812 2 522.299853 1042.58515 NaN NaN NaN NaN NaN NaN NaN 130.82 1 126.05 125.55 126.55 -4.7725 0 0 0 0.21486 1 25183 25183 5.7604 0.52976 1 + 15616 16795 10193 10196 15737 15737 0.06556422833659781 FTPSQIPQY 9 Unmodified _FTPSQIPQY_ 0 0 0 REV__ENST00000463722.5_1_7:99695745-99696843:-|nuORF REV__ENST00000463722.5_1_7:99695745-99696843:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2625122070312 2 540.771657 1079.52876 0.23316 0.00012608 -0.45706 -0.00024716 -0.2239 -0.00012108 540.771244744863 97.328 0.4692 93.093 92.818 93.287 -4.2348 15 13 2 0 0 0 0.72864 1 18554 18554 23.148 23.148 1 1295800 + 15617 17857 10194 10197 15738 15738 -0.007822497936558648 FTRRLSLAPR 10 Unmodified _FTRRLSLAPR_ 0 0 0 REV__ZMYND8|p.S650Afs*37|1|0.3|ENSG00000101040|chr20:47246284-47246284|T/-|frameshift_variant REV__ZMYND8|p.S650Afs*37|1|0.3|ENSG00000101040|chr20:47246284-47246284|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.91998291015625 4 304.937283 1215.72002 0.35131 0.00010713 -0.54587 -0.00016646 -0.19456 -5.9328E-05 304.9370616607699 29.631 0.70035 27.738 27.332 28.032 -1.8928 29 19 2 0 0 0 0.52512 1 5073 5073 0.84494 0.83168 1 687340 + 15618 25567 10195 10198 15739 15739 0.12079296028127828 FTRRLSLAPR 10 Unmodified _FTRRLSLAPR_ 0 0 0 REV__ZMYND8|p.S650Afs*37|1|0.3|ENSG00000101040|chr20:47246284-47246284|T/-|frameshift_variant REV__ZMYND8|p.S650Afs*37|1|0.3|ENSG00000101040|chr20:47246284-47246284|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 304.937283 1215.72002 -0.43277 -0.00013197 0.027184 8.2894E-06 -0.40559 -0.00012368 304.93728600305974 27.718 1.0329 27.718 27.044 28.077 0 -0.013292 0.00037125 NaN 0.84494 59 29 4 NaN NaN NaN NaN 0 NaN NaN 0 1268800 + 15619 25567 10195 10198 0.12079296028127828 FTRRLSLAPR 10 Unmodified _FTRRLSLAPR_ 0 0 0 REV__ZMYND8|p.S650Afs*37|1|0.3|ENSG00000101040|chr20:47246284-47246284|T/-|frameshift_variant REV__ZMYND8|p.S650Afs*37|1|0.3|ENSG00000101040|chr20:47246284-47246284|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 304.937283 1215.72002 0.28852 8.7979E-05 -0.86571 -0.00026399 -0.5772 -0.00017601 304.9371146671776 29.812 0.73045 27.695 27.28 28.011 -2.1167 -0.035927 -0.00071786 NaN 0.84494 39 20 3 NaN NaN NaN NaN 0 NaN NaN 0 600170 + 15620 25567 10195 10198 0.12079296028127828 FTRRLSLAPR 10 Unmodified _FTRRLSLAPR_ 0 0 0 REV__ZMYND8|p.S650Afs*37|1|0.3|ENSG00000101040|chr20:47246284-47246284|T/-|frameshift_variant REV__ZMYND8|p.S650Afs*37|1|0.3|ENSG00000101040|chr20:47246284-47246284|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 304.937283 1215.72002 0.35131 0.00010713 -0.54587 -0.00016646 -0.19456 -5.9328E-05 304.9370616607699 29.631 0.70035 27.738 27.332 28.032 -1.8928 0.007249 -0.00032773 NaN 0.84494 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 687340 + 15621 25567 10195 10198 0.12079296028127828 FTRRLSLAPR 10 Unmodified _FTRRLSLAPR_ 0 0 0 REV__ZMYND8|p.S650Afs*37|1|0.3|ENSG00000101040|chr20:47246284-47246284|T/-|frameshift_variant REV__ZMYND8|p.S650Afs*37|1|0.3|ENSG00000101040|chr20:47246284-47246284|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 304.937283 1215.72002 -0.16209 -4.9427E-05 -0.099353 -3.0296E-05 -0.26144 -7.9723E-05 304.93725920116515 29.847 0.62696 27.773 27.413 28.04 -2.0743 0.04197 0.0002169 NaN 0.84494 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 703010 + 15622 25567 10195 10198 0.12079296028127828 FTRYWIKE 8 Unmodified _FTRYWIKE_ 0 0 0 REV__ACTBL2|p.H89R|1|0.07|ENSG00000169067|chr5:57482442-57482442|T/C|missense_variant REV__ACTBL2|p.H89R|1|0.07|ENSG00000169067|chr5:57482442-57482442|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.20489501953125 3 381.537953 1141.59203 0.31094 0.00011863 2.3065 0.00088 2.6174 0.00099864 381.53912785849394 91.436 0.19843 87.341 87.194 87.393 -4.0946 7 5 2 0 0 0 1.027 1 17407 17407 1.3295 0 1 308320 + 15623 12924 10196 10199 15740 15740 0.026897357142161127 FTTSYKLKRHL 11 Unmodified _FTTSYKLKRHL_ 0 0 0 ENSG00000070476|ENST00000389709|ZXDC;ZXDA|p.G678Wfs*16|1|0.83|ENSG00000198205|chrX:57908389-57908390|-/A|frameshift_variant;nc|ENSG00000070476|Q2QGD7-2|ZXDC;ZXDA|p.F774Sfs*19|1|0.34|ENSG00000198205|chrX:57908100-57908100|A/-|frameshift_variant;ENSG00000198205|ENST00000358697|ZXDA ENSG00000070476|ENST00000389709|ZXDC ENSG00000070476|ENST00000389709|ZXDC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24774169921875 3 465.269866 1392.78777 NaN NaN NaN NaN NaN NaN NaN 102.98 1 98.961 98.461 99.461 -4.0212 0 0 0 0.22632 1 19797 19797 0.0059557 0 1 15624 1432 10197 10200 15741 15741 0.10708701168277912 FTVGDNVVSGS 11 Unmodified _FTVGDNVVSGS_ 0 0 0 ENSG00000047056|ENST00000263150|WDR37;nc|ENSG00000047056|Q9Y2I8-2|WDR37 ENSG00000047056|ENST00000263150|WDR37 ENSG00000047056|ENST00000263150|WDR37 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2640380859375 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 127.16 1 122.54 122.04 123.04 -4.6172 0 0 0 0.17845 1 25074 25074 23.79 2.0431 1 15625 1212 10198 10201 15742 15742 -0.028280455242793323 FTVLSKLRTPL 11 Unmodified _FTVLSKLRTPL_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000568855.1_1_16:70265056-70269235:-|nuORF;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1274.7706298828125 1 1274.78308 1273.77581 0.61563 0.00078479 -3.7056 -0.0047238 -3.09 -0.003939 1275.7772039409806 172.25 0.17377 167.37 167.24 167.41 -4.881 5 4 2 0 0 0 0.79336 1 34163 34163 4.5289 1.5336 1 8665500 15626 5117 10199 10202 15743 15743 0.14987084425069952 FTVTATQPTV 10 Unmodified _FTVTATQPTV_ 0 0 0 REV__ENST00000398275.4_1_17:44273763-44273967:+|nuORF REV__ENST00000398275.4_1_17:44273763-44273967:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.285888671875 2 532.784764 1063.55498 0.065508 3.4902E-05 0.31877 0.00016984 0.38428 0.00020474 532.7849946312963 93.387 0.4808 89.396 89.175 89.656 -3.9907 24 13 2 0 0 0 0.4708 2 18309 18266;18309 26.268 6.7997 1 2195000 + 15627 21327 10200 10203 15744;15745 15745 0.025740193777892273 FTVTATQPTV 10 Unmodified _FTVTATQPTV_ 0 0 0 REV__ENST00000398275.4_1_17:44273763-44273967:+|nuORF REV__ENST00000398275.4_1_17:44273763-44273967:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28662109375 2 532.784764 1063.55498 0.61767 0.00032909 -0.25261 -0.00013459 0.36507 0.0001945 532.7847226837866 93.54 0.50236 89.396 89.115 89.617 -4.1435 26 14 2 0 0 0 0.57807 1 17848 17848 20.415 2.2682 1 2893700 + 15628 21327 10200 10203 15746 15746 0.025740193777892273 FTVTATQPTV 10 Unmodified _FTVTATQPTV_ 0 0 0 REV__ENST00000398275.4_1_17:44273763-44273967:+|nuORF REV__ENST00000398275.4_1_17:44273763-44273967:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2756958007812 2 532.784764 1063.55498 0.61767 0.00032909 -0.25261 -0.00013459 0.36507 0.0001945 532.7847226837866 93.54 0.50236 89.396 89.115 89.617 -4.1435 26 14 2 0 0 0 0.82288 1 17867 17867 23.79 10.747 1 2893700 + 15629 21327 10200 10203 15747 15747 0.025740193777892273 FTYESLKKT 9 Unmodified _FTYESLKKT_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.1349182128906 3 372.869368 1115.58628 0.0061923 2.3089E-06 1.0171 0.00037925 1.0233 0.00038156 372.87068895318345 47.484 0.37835 44.542 44.308 44.686 -2.9421 15 10 3 0 0 0 0.88109 1 8634 8634 0.15932 0 1 517920 15630 4610 10201 10204 15748 15748 0.033105924118899566 FTYGCTWGF 9 Unmodified _FTYGCTWGF_ 0 0 0 ABHD2|p.E184G|1|0.34|ENSG00000140526|chr15:89175824-89175824|A/G|missense_variant ABHD2|p.E184G|1|0.34|ENSG00000140526|chr15:89175824-89175824|A/G|missense_variant ABHD2|p.E184G|1|0.34|ENSG00000140526|chr15:89175824-89175824|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2625122070312 2 541.226028 1080.4375 0.21198 0.00011473 -0.9555 -0.00051714 -0.74352 -0.00040241 541.2255586047155 97.102 0.41486 92.867 92.709 93.124 -4.2348 13 11 2 0 0 0 0.8319 1 18554 18554 7.9102 0 1 959460 15631 21 10202 10205 15749 15749 -0.09949836762643827 FTYHKSKGD 9 Unmodified _FTYHKSKGD_ 0 0 0 ENSG00000185989|ENST00000334062|RASA3;nc|ENSG00000185989|Q14644-2|RASA3 ENSG00000185989|ENST00000334062|RASA3 ENSG00000185989|ENST00000334062|RASA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7725219726562 2 541.766906 1081.51926 0.53188 0.00028816 -0.48782 -0.00026429 0.044061 2.3871E-05 541.7665870548185 82.752 1.0759 82.752 82.396 83.472 0 94 30 5 0 0 0 0.57447 1 16111 16111 14.838 2.3067 1 85364000 15632 7027 10203 10206 15750 15750 -0.01824018079173584 FTYIGVSVVLF 11 Unmodified _FTYIGVSVVLF_ 0 0 0 GRIA3|p.A562T|1|0.57|ENSG00000125675|chrX:123417585-123417585|G/A|missense_variant GRIA3|p.A562T|1|0.57|ENSG00000125675|chrX:123417585-123417585|G/A|missense_variant GRIA3|p.A562T|1|0.57|ENSG00000125675|chrX:123417585-123417585|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7794189453125 2 622.849907 1243.68526 NaN NaN NaN NaN NaN NaN NaN 123.97 1 119.37 118.87 119.87 -4.5926 0 0 0 0.23324 1 23858 23858 5.7319 0.50118 1 15633 11863 10204 10207 15751 15751 0.07316615376817026 FVAKIVPYA 9 Unmodified _FVAKIVPYA_ 0 0 0 SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant;nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG;SPEG|p.E3002K|1|0.3|ENSG00000072195|chr2:219490491-219490491|G/A|missense_variant SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 504.7847900390625 2 504.299853 1006.58515 0.002602 1.3122E-06 3.013 0.0015195 3.0156 0.0015208 504.80472425626397 141.32 0.20384 136.67 136.51 136.71 -4.6493 7 5 2 0 0 0 0.53429 1 27878 27878 4.7159 4.3077 1 2501800 15634 1461 10205 10208 15752 15752 0.0821242283365109 FVALYHVL 8 Unmodified _FVALYHVL_ 0 0 0 WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87 WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24224853515625 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 130.4 1 125.62 125.12 126.12 -4.7725 0 0 0 0.23711 1 25095 25095 0.62683 0.50396 1 15635 6172 10206 10209 15753 15753 0.06143867145146942 FVAQFQRRAG 10 Unmodified _FVAQFQRRAG_ 0 0 0 REV__ENSG00000215912|ENST00000401095|TTC34 REV__ENSG00000215912|ENST00000401095|TTC34 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2676391601562 2 590.322714 1178.63087 NaN NaN NaN NaN NaN NaN NaN 115.24 1 115.24 114.74 115.74 0 0 0 0 0.22588 1 22679 22679 6.7232 0.51738 1 + 15636 19697 10207 10210 15754 15754 0.04870461068594523 FVASDKQY 8 Unmodified _FVASDKQY_ 0 0 0 REV__nc|ENSG00000174514|Q8N468-2|MFSD4A REV__nc|ENSG00000174514|Q8N468-2|MFSD4A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7224426269531 2 479.23745 956.460347 -0.19704 -9.4427E-05 -1.9167 -0.00091855 -2.1137 -0.001013 479.23676077364644 109.83 0.64234 105.38 104.95 105.59 -4.4518 22 17 2 0 0 0 0.97173 1 21033 21033 18.135 0 1 975440 + 15637 18416 10208 10211 15755 15755 -0.019624943735266243 FVDHYNGWIWG 11 Unmodified _FVDHYNGWIWG_ 0 0 0 ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2491149902344 3 465.21565 1392.62512 NaN NaN NaN NaN NaN NaN NaN 101.91 1 97.726 97.226 98.226 -4.1861 0 0 0 0.22632 1 20025 20025 0.172 0.060958 1 15638 3516 10209 10212 15756 15756 -0.055486822337343256 FVDKNNDLLY 10 Unmodified _FVDKNNDLLY_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;ENST00000494129.1_1_2:192246088-192252282:+|nuORF MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.778076171875 2 620.814053 1239.61355 0.5313 0.00032984 -0.30145 -0.00018715 0.22985 0.00014269 620.8138388933701 100.66 1.171 96.667 96.21 97.381 -3.9895 121 33 5 0 0 0 0.34654 2 19353 19303;19353 34.402 15.04 1 92662000 15639 3536 10210 10213 15757;15758 15758 0.0033307595228961873 FVDNASKNLG 10 Unmodified _FVDNASKNLG_ 0 0 0 tr|U7SXA5|U7SXA5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00955PE=4SV=1 tr|U7SXA5|U7SXA5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00955PE=4SV=1 tr|U7SXA5|U7SXA5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00955PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2743530273438 2 532.772188 1063.52982 0.52113 0.00027765 -0.3697 -0.00019697 0.15143 8.0677E-05 532.7718808743032 30.546 0.49398 28.43 28.189 28.683 -2.1167 15 13 2 0 0 0 0.67319 1 5505 5505 13.906 3.0821 1 378550 15640 26266 10211 10214 15759 15759 0.0005996457521177945 FVDPYPVNKY 10 Unmodified _FVDPYPVNKY_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7823486328125 2 621.313689 1240.61282 0.47402 0.00029451 -0.018837 -1.1703E-05 0.45518 0.00028281 621.3135727732868 108.65 1.147 104.33 103.76 104.91 -4.32 107 32 4 0 0 0 0.20972 1 21410 21410 43.772 28.524 1 20514000 15641 6323 10212 10215 15760 15760 0.002142813032378399 FVDPYPVNKY 10 Unmodified _FVDPYPVNKY_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7822265625 2 621.313689 1240.61282 0.87008 0.00054059 -0.3304 -0.00020528 0.53967 0.00033531 621.3133805477568 108.42 1.2181 104.28 103.66 104.88 -4.135 110 34 4 0 0 0 0.26497 1 20891 20891 39.95 24.103 1 19333000 15642 6323 10212 10215 15761 15761 0.002142813032378399 FVDPYPVNKY 10 Unmodified _FVDPYPVNKY_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 621.313689 1240.61282 0.72814 0.0004524 -0.24171 -0.00015017 0.48644 0.00030223 621.3134629448775 104.14 1.2147 104.14 103.51 104.72 0 -0.13194 -0.00025395 NaN 43.772 100 34 4 NaN NaN NaN NaN 0 NaN NaN 0 19670000 15643 6323 10212 10215 0.002142813032378399 FVDPYPVNKY 10 Unmodified _FVDPYPVNKY_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 621.313689 1240.61282 0.11188 6.9512E-05 0.48143 0.00029912 0.59331 0.00036863 621.3138812146149 108.78 1.2383 104.33 103.64 104.88 -4.4518 0.056311 0.00064465 NaN 43.772 108 35 4 NaN NaN NaN NaN 0 NaN NaN 0 19148000 15644 6323 10212 10215 0.002142813032378399 FVDYAQKNGY 10 Unmodified _FVDYAQKNGY_ 0 0 0 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2803344726562 2 602.785296 1203.55604 1.0222 0.00061614 -0.99251 -0.00059827 0.02965 1.7872E-05 602.7847182987437 65.151 0.51343 62.104 61.764 62.278 -3.047 24 14 2 0 0 0 0.25077 1 12579 12579 69.105 45.315 1 2199500 15645 4308 10213 10216 15762 15762 -0.0375976625327894 FVDYAQKNGY 10 Unmodified _FVDYAQKNGY_ 0 0 0 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2833862304688 2 602.785296 1203.55604 0.58078 0.00035009 -0.82644 -0.00049816 -0.24566 -0.00014808 602.7847390719087 65.548 0.5275 62.09 61.787 62.314 -3.4581 25 14 2 0 0 0 0.053241 1 12280 12280 92.653 56.147 1 1709000 15646 4308 10213 10216 15763 15763 -0.0375976625327894 FVDYAQKNGY 10 Unmodified _FVDYAQKNGY_ 0 0 0 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2821655273438 2 602.785296 1203.55604 0.3865 0.00023298 -0.5153 -0.00031062 -0.1288 -7.7638E-05 602.784964175999 65.175 0.57408 61.892 61.623 62.197 -3.2832 26 16 2 0 0 0 0.2022 1 12246 12246 81.89 54.261 1 2282600 15647 4308 10213 10216 15764 15764 -0.0375976625327894 FVELLSPRRK 10 Unmodified _FVELLSPRRK_ 0 0 0 BAZ1A|p.L1455*|1|0.27|ENSG00000198604|chr14:34758726-34758726|A/-|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A;BAZ1A|p.R1409Kfs*11|1|0.36|ENSG00000198604|chr14:34761774-34761774|C/-|frameshift_variant BAZ1A|p.L1455*|1|0.27|ENSG00000198604|chr14:34758726-34758726|A/-|frameshift_variant BAZ1A|p.L1455*|1|0.27|ENSG00000198604|chr14:34758726-34758726|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7672119140625 2 622.877322 1243.74009 0.32437 0.00020204 -0.1966 -0.00012246 0.12776 7.9581E-05 622.8773332126638 59.496 0.62532 56.273 55.978 56.603 -3.2237 29 17 2 0 0 0 1.1276 1 11109 11109 6.6304 4.7029 1 1345000 15648 299 10214 10217 15765 15765 0.12797046968057657 FVFVFFLMY 9 Unmodified _FVFVFFLMY_ 0 0 0 REV__ENST00000489108.1_1_1:22084083-22109432:-|nuORF REV__ENST00000489108.1_1_1:22084083-22109432:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.3113098144531 3 404.876918 1211.60893 NaN NaN NaN NaN NaN NaN NaN 25.789 1 23.867 23.367 24.367 -1.9222 0 0 0 0.23508 1 4252 4252 1.1933 0 1 + 15649 22283 10215 10218 15766 15766 0.011585202758169544 FVICIGIYIY 10 Unmodified _FVICIGIYIY_ 0 0 0 ENST00000396987.7_1_8:41480416-41480683:+|nuORF ENST00000396987.7_1_8:41480416-41480683:+|nuORF ENST00000396987.7_1_8:41480416-41480683:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2916259765625 2 602.327753 1202.64095 NaN NaN NaN NaN NaN NaN NaN 156.87 1 151.59 151.09 152.09 -5.2854 0 0 0 0.22588 1 30437 30437 12.532 0.89125 1 15650 9455 10216 10219 15767 15767 0.04773887958981504 FVIDCTHGKQL 11 Unmodified _FVIDCTHGKQL_ 0 0 0 ENSG00000183888|ENST00000329454|SRARP ENSG00000183888|ENST00000329454|SRARP ENSG00000183888|ENST00000329454|SRARP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.768798828125 2 630.823898 1259.63324 NaN NaN NaN NaN NaN NaN NaN 164.3 1 164.3 163.8 164.8 0 0 0 0 0.22775 1 33207 33207 10.074 1.3285 1 15651 6879 10217 10220 15768 15768 0.013811286914005905 FVIFAEGLEG 10 Unmodified _FVIFAEGLEG_ 0 0 0 REV__RBM12|p.C431Vfs*4|1|0.33|ENSG00000244462|chr20:35654032-35654032|A/-|frameshift_variant REV__RBM12|p.C431Vfs*4|1|0.33|ENSG00000244462|chr20:35654032-35654032|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.279541015625 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 96.791 1 92.871 92.371 93.371 -3.9194 0 0 0 2.8426 1 18577 18577 0.51642 0 1 + 15652 19811 10218 10221 15769 15769 0.012109208661513549 FVKLIHIPINN 11 Unmodified _FVKLIHIPINN_ 0 0 0 ENST00000461536.1_1_7:54823470-54826890:-|nuORF;ENSG00000132432|ENST00000352861|SEC61G;ENST00000460484.5_1_7:54823470-54826890:-|nuORF ENST00000461536.1_1_7:54823470-54826890:-|nuORF ENST00000461536.1_1_7:54823470-54826890:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2159729003906 3 436.599324 1306.77614 0.074664 3.2598E-05 -0.050062 -2.1857E-05 0.024602 1.0741E-05 436.59925085994166 139.4 0.59203 134.55 134.25 134.84 -4.8492 30 16 2 0 0 0 0.78057 1 26914 26914 6.2344 1.5184 1 1881400 15653 3724 10219 10222 15770 15770 0.13502504144958039 FVLFAILKK 9 Unmodified _FVLFAILKK_ 0 0 0 ENSG00000231192|ENST00000641874|OR5H1 ENSG00000231192|ENST00000641874|OR5H1 ENSG00000231192|ENST00000641874|OR5H1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013854980469 3 360.238956 1077.69504 NaN NaN NaN NaN NaN NaN NaN 68.072 1 68.072 67.572 68.572 0 0 0 0 0.23508 1 13160 13160 1.1933 0.23107 1 15654 7806 10220 10223 15771 15771 0.15929848172845595 FVLFLKDGKL 10 Unmodified _FVLFLKDGKL_ 0 0 0 nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3;ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B nc|ENSG00000283378|Q9BZ76-2|CNTNAP3 nc|ENSG00000283378|Q9BZ76-2|CNTNAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2705688476562 2 590.360442 1178.70633 0.99118 0.00058516 -0.050668 -2.9912E-05 0.94052 0.00055524 590.8622076899353 119.88 0.39839 115.24 114.99 115.38 -4.645 17 10 2 0 0 0 0.46263 1 22995 22995 1.0651 1.0013 1 1975900 15655 2402 10221 10224 15772 15772 0.12412625476304129 FVLKDFRGP 9 Unmodified _FVLKDFRGP_ 0 0 0 REV__nc|ENSG00000124587|Q13608-3|PEX6 REV__nc|ENSG00000124587|Q13608-3|PEX6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20611572265625 3 360.206315 1077.59712 NaN NaN NaN NaN NaN NaN NaN 46.533 1 43.668 43.168 44.168 -2.8653 0 0 0 0.1964 1 8461 8461 0.073264 0.069883 1 + 15656 15787 10222 10225 15773 15773 0.06142039576843672 FVLLCCRKP 9 Unmodified _FVLLCCRKP_ 0 0 0 REV__ENST00000461705.1_1_2:27806352-27806451:+|nuORF REV__ENST00000461705.1_1_2:27806352-27806451:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20135498046875 3 360.201519 1077.58273 NaN NaN NaN NaN NaN NaN NaN 82.632 1 79.024 78.524 79.524 -3.6079 0 0 0 0.23508 1 16147 16147 2.9952 0 1 + 15657 21896 10223 10226 15774 15774 0.04703927832701993 FVLRLLVLY 9 Unmodified _FVLRLLVLY_ 0 0 0 REV__ENST00000526878.5_1_11:460175-490579:+|nuORF REV__ENST00000526878.5_1_11:460175-490579:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 568.3671875 2 568.365527 1134.7165 NaN NaN NaN NaN NaN NaN NaN 174.6 1 169.72 169.22 170.22 -4.8845 0 0 0 0.19624 1 34692 34692 0.073264 0.069883 1 + 15658 18438 10224 10227 15775 15775 0.1545323320156058 FVNKCLIKN 9 Unmodified _FVNKCLIKN_ 0 0 0 nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENSG00000126934|ENST00000262948|MAP2K2 nc|ENSG00000169032|Q02750-2|MAP2K1 nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2067565917969 3 360.207438 1077.60049 NaN NaN NaN NaN NaN NaN NaN 165.82 1 160.84 160.34 161.34 -4.9811 0 0 0 0.19687 1 32447 32447 0.40827 0.34428 1 15659 3455 10225 10228 15776 15776 0.064789663592137 FVNKNMNTL 9 Unmodified _FVNKNMNTL_ 0 0 0 REV__ITIH1|p.V294F|1|0.4|ENSG00000055957|chr3:52782217-52782217|G/T|missense_variant REV__ITIH1|p.V294F|1|0.4|ENSG00000055957|chr3:52782217-52782217|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2782592773438 2 540.778959 1079.54336 -0.1847 -9.988E-05 -1.4193 -0.00076753 -1.604 -0.00086741 541.2797446415681 110.12 1.4585 105.74 104.92 106.38 -4.3776 109 41 4 0 0 0 0.28819 1 21546 21546 32.305 1.6689 1 5102700 + 15660 23681 10226 10229 15777 15777 0.006774990828262162 FVPDTPVGV 9 Unmodified _FVPDTPVGV_ 0 0 0 nc|ENSG00000144711|Q6DN90-2|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000144711|ENST00000613206|IQSEC1 nc|ENSG00000144711|Q6DN90-2|IQSEC1 nc|ENSG00000144711|Q6DN90-2|IQSEC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2402038574219 2 465.750193 929.485833 0.14123 6.5779E-05 0.92117 0.00042904 1.0624 0.00049482 465.7501481121686 118.04 0.45782 113.54 113.17 113.63 -4.502 16 12 2 0 0 0 0.8204 1 23239 23239 13.508 9.5635 1 795400 15661 4570 10227 10230 15778 15778 0.018269801489168458 FVPLHRRLQRL 11 Unmodified _FVPLHRRLQRL_ 0 0 0 REV__ENST00000485594.1_1_1:161089027-161090552:+|nuORF REV__ENST00000485594.1_1_1:161089027-161090552:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 717.838623046875 2 717.943862 1433.87317 NaN NaN NaN NaN NaN NaN NaN 168.35 1 163.4 162.9 163.9 -4.948 0 0 0 0.23698 1 33183 33183 1.3295 0.13619 1 + 15662 17347 10228 10231 15779 15779 0.17358911144583544 FVPLYDELGV 10 Unmodified _FVPLYDELGV_ 0 0 0 REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3195190429688 2 576.30279 1150.59103 -0.019299 -1.1122E-05 -0.68998 -0.00039763 -0.70927 -0.00040876 576.3023791279977 76.486 0.55936 73.071 72.83 73.389 -3.4151 25 15 2 0 0 0 0.26486 2 14951 14906;14951 39.957 13.937 1 2056900 + 15663 14485 10229 10232 15780;15781 15781 0.0217547655463477 FVQRFCLQY 9 Unmodified _FVQRFCLQY_ 0 0 0 DCAF8L1|p.R187C|1|0.05|ENSG00000226372|chrX:27980776-27980776|G/A|missense_variant DCAF8L1|p.R187C|1|0.05|ENSG00000226372|chrX:27980776-27980776|G/A|missense_variant DCAF8L1|p.R187C|1|0.05|ENSG00000226372|chrX:27980776-27980776|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2993774414062 2 602.302601 1202.59065 NaN NaN NaN NaN NaN NaN NaN 157.47 1 152.18 151.68 152.68 -5.2854 0 0 0 0.23508 1 30559 30559 11.64 1.5664 1 15664 787 10230 10233 15782 15782 -0.0025422164615065412 FVQRFCLQY 9 Unmodified _FVQRFCLQY_ 0 0 0 DCAF8L1|p.R187C|1|0.05|ENSG00000226372|chrX:27980776-27980776|G/A|missense_variant DCAF8L1|p.R187C|1|0.05|ENSG00000226372|chrX:27980776-27980776|G/A|missense_variant DCAF8L1|p.R187C|1|0.05|ENSG00000226372|chrX:27980776-27980776|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2861328125 2 602.302601 1202.59065 NaN NaN NaN NaN NaN NaN NaN 157.59 1 152.3 151.8 152.8 -5.2854 0 0 0 0.23508 1 30582 30582 11.64 1.5664 1 15665 787 10230 10233 15783 15783 -0.0025422164615065412 FVQYYRQCQSY 11 Unmodified _FVQYYRQCQSY_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 495.56011962890625 3 495.559088 1483.65543 NaN NaN NaN NaN NaN NaN NaN 165.1 1 160.12 159.62 160.62 -4.9811 0 0 0 0.23698 1 32245 32245 0.50596 0 1 + 15666 16048 10231 10234 15784 15784 -0.06704691630829984 FVRRKMEL 8 Unmodified _FVRRKMEL_ 0 0 0 REV__ENST00000477143.5_1_16:319270-321397:-|nuORF REV__ENST00000477143.5_1_16:319270-321397:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20147705078125 3 360.211183 1077.61172 NaN NaN NaN NaN NaN NaN NaN 87.965 1 84.173 83.673 84.673 -3.7926 0 0 0 0.21486 1 17203 17203 3.2813 0.54611 1 + 15667 14349 10232 10235 15785 15785 0.0760178845334849 FVRRKMEL 8 Unmodified _FVRRKMEL_ 0 0 0 REV__ENST00000477143.5_1_16:319270-321397:-|nuORF REV__ENST00000477143.5_1_16:319270-321397:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21002197265625 3 360.211183 1077.61172 NaN NaN NaN NaN NaN NaN NaN 88.008 1 84.258 83.758 84.758 -3.7501 0 0 0 0.21486 1 16841 16841 3.5965 0.0094347 1 + 15668 14349 10232 10235 15786 15786 0.0760178845334849 FVRRTYRQVLM 11 Unmodified _FVRRTYRQVLM_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2589111328125 3 490.278367 1467.81327 NaN NaN NaN NaN NaN NaN NaN 113.11 1 108.58 108.08 109.08 -4.5259 0 0 0 0.22632 1 21711 21711 0.026206 0.025642 1 15669 5800 10233 10236 15787 15787 0.09807852419044139 FVRVSGEATI 10 Unmodified _FVRVSGEATI_ 0 0 0 ENSG00000156374|ENST00000369847|PCGF6;nc|ENSG00000156374|Q9BYE7-3|PCGF6;ENST00000595406.1_1_19:22321288-22321780:+|nuORF ENSG00000156374|ENST00000369847|PCGF6 ENSG00000156374|ENST00000369847|PCGF6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 107.7 1 103.56 103.06 104.06 -4.135 0 0 0 0.22588 1 20716 20716 6.6304 1.3335 1 15670 5085 10234 10237 15788 15788 0.0461712798901317 FVRWWQWHRLK 11 Unmodified _FVRWWQWHRLK_ 0 0 0 REV__nc|ENSG00000133026|P35580|MYH10 REV__nc|ENSG00000133026|P35580|MYH10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.771484375 3 547.968633 1640.88407 0.16694 9.1478E-05 -4.2162 -0.0023104 -4.0493 -0.0022189 548.3014947436105 83.776 0.10344 80.168 80.081 80.184 -3.6079 4 2 2 0 0 0 0.96224 1 16373 16373 0.50596 0.051438 1 669220 + 15671 16148 10235 10238 15789 15789 0.0892631351887303 FVSEFHNFL 9 Unmodified _FVSEFHNFL_ 0 0 0 nc|ENSG00000188089|Q3MJ16-2|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2169189453125 3 380.522192 1138.54475 -0.10355 -3.9404E-05 0.86388 0.00032872 0.76032 0.00028932 380.5224457855865 35.81 0.80135 35.81 35.688 36.49 0 52 22 3 0 0 0 0.73814 1 6663 6663 4.5289 4.5289 1 15482000 15672 7149 10236 10239 15790 15790 -0.018985435567628883 FVSEFHNFL 9 Unmodified _FVSEFHNFL_ 0 0 0 nc|ENSG00000188089|Q3MJ16-2|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 380.522192 1138.54475 -0.10355 -3.9404E-05 0.86388 0.00032872 0.76032 0.00028932 380.5224457855865 35.81 0.80135 35.81 35.688 36.49 0 0.055408 -0.00016816 NaN 4.5289 52 22 3 NaN NaN NaN NaN 0 NaN NaN 0 15482000 15673 7149 10236 10239 -0.018985435567628883 FVSEFHNFL 9 Unmodified _FVSEFHNFL_ 0 0 0 nc|ENSG00000188089|Q3MJ16-2|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.522192 1138.54475 -0.56233 -0.00021398 1.2696 0.00048309 0.70722 0.00026911 380.52265536772336 38.207 0.97191 35.738 35.471 36.443 -2.4688 -0.016279 0.00029495 NaN 4.5289 69 27 3 NaN NaN NaN NaN 0 NaN NaN 0 12863000 15674 7149 10236 10239 -0.018985435567628883 FVSEFHNFL 9 Unmodified _FVSEFHNFL_ 0 0 0 nc|ENSG00000188089|Q3MJ16-2|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.522192 1138.54475 0.060958 2.3196E-05 0.60253 0.00022928 0.66349 0.00025247 380.52235804078117 38.155 0.92391 35.713 35.412 36.336 -2.4419 -0.041253 -0.0004665 NaN 4.5289 65 25 3 NaN NaN NaN NaN 0 NaN NaN 0 9688000 15675 7149 10236 10239 -0.018985435567628883 FVSEFHNFL 9 Unmodified _FVSEFHNFL_ 0 0 0 nc|ENSG00000188089|Q3MJ16-2|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 380.522192 1138.54475 -0.48085 -0.00018297 1.2202 0.00046433 0.73939 0.00028135 380.5226025775777 38.099 0.93644 35.757 35.459 36.396 -2.3421 0.0021237 0.00023866 NaN 4.5289 47 26 2 NaN NaN NaN NaN 0 NaN NaN 0 4508700 15676 7149 10236 10239 -0.018985435567628883 FVSFEGTTI 9 Unmodified _FVSFEGTTI_ 0 0 0 REV__tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1 REV__tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.155517578125 3 334.171047 999.491313 NaN NaN NaN NaN NaN NaN NaN 127.52 1 122.82 122.32 123.32 -4.6998 0 0 0 0.23508 1 24530 24530 1.0715 0.61312 1 + 15677 25092 10237 10240 15791 15791 -0.00845341059277871 FVSLATQY 8 Unmodified _FVSLATQY_ 0 0 0 ENST00000369738.8_1_1:111889092-111889603:+|nuORF ENST00000369738.8_1_1:111889092-111889603:+|nuORF ENST00000369738.8_1_1:111889092-111889603:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 119.59 1 114.95 114.45 115.45 -4.645 0 0 0 0.21486 1 22954 22954 1.3295 0 1 15678 9126 10238 10241 15792 15792 0.00354693631857117 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16070556640625 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 16.036 1 16.036 15.536 16.536 0 0 0 0 0.21486 1 2476 2476 1.8442 0 1 15679 4996 10239 10242 15793 15793 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1695251464844 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 20.894 1 20.894 20.394 21.394 0 0 0 0 0.21486 1 3475 3475 1.8442 0 1 15680 4996 10239 10242 15794 15794 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647644042969 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 22.616 1 22.616 22.116 23.116 0 0 0 0 0.21486 1 3831 3831 1.8442 0 1 15681 4996 10239 10242 15795 15795 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697082519531 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 22.835 1 22.835 22.335 23.335 0 0 0 0 0.21486 1 3873 3873 1.8442 0 1 15682 4996 10239 10242 15796 15796 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1699523925781 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 23.337 1 23.337 22.837 23.837 0 0 0 0 0.21486 1 3979 3979 1.8442 0 1 15683 4996 10239 10242 15797 15797 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 25.112 1 25.112 24.612 25.612 0 0 0 0 0.21486 1 4345 4345 1.8442 0 1 15684 4996 10239 10242 15798 15798 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16998291015625 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 26.709 1 26.709 26.209 27.209 0 0 0 0 0.21486 1 4686 4686 1.8442 0 1 15685 4996 10239 10242 15799 15799 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651916503906 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 27.18 1 27.18 26.68 27.68 0 0 0 0 0.21486 1 4786 4786 1.8442 0 1 15686 4996 10239 10242 15800 15800 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1695251464844 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 27.259 1 27.259 26.759 27.759 0 0 0 0 0.21486 1 4802 4802 1.8442 0 1 15687 4996 10239 10242 15801 15801 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17022705078125 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 27.728 1 27.728 27.228 28.228 0 0 0 0 0.21486 1 4900 4900 1.8442 0 1 15688 4996 10239 10242 15802 15802 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698913574219 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 28.188 1 28.188 27.688 28.688 0 0 0 0 0.21486 1 4997 4997 1.8442 0 1 15689 4996 10239 10242 15803 15803 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17071533203125 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 28.645 1 28.645 28.145 29.145 0 0 0 0 0.21486 1 5094 5094 1.8442 0 1 15690 4996 10239 10242 15804 15804 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700134277344 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 29.753 1 29.753 29.253 30.253 0 0 0 0 0.21486 1 5328 5328 1.8442 0 1 15691 4996 10239 10242 15805 15805 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1695251464844 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 31.009 1 31.009 30.509 31.509 0 0 0 0 0.21486 1 5586 5586 1.8442 0 1 15692 4996 10239 10242 15806 15806 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1696472167969 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 31.382 1 31.382 30.882 31.882 0 0 0 0 0.21486 1 5666 5666 1.8442 0 1 15693 4996 10239 10242 15807 15807 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.23089599609375 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 31.747 1 31.747 31.247 32.247 0 0 0 0 0.21486 1 5744 5744 1.8442 0 1 15694 4996 10239 10242 15808 15808 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698303222656 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 32.713 1 32.713 32.213 33.213 0 0 0 0 0.21486 1 5951 5951 1.8442 0 1 15695 4996 10239 10242 15809 15809 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16949462890625 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 33.69 1 33.69 33.19 34.19 0 0 0 0 0.21486 1 6154 6154 1.8442 0 1 15696 4996 10239 10242 15810 15810 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.23040771484375 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 34.213 1 34.213 33.713 34.713 0 0 0 0 0.21486 1 6255 6255 1.8442 0 1 15697 4996 10239 10242 15811 15811 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 34.278 1 34.278 33.778 34.778 0 0 0 0 0.21486 1 6268 6268 1.8442 0 1 15698 4996 10239 10242 15812 15812 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 34.504 1 34.504 34.004 35.004 0 0 0 0 0.21486 1 6316 6316 1.8442 0 1 15699 4996 10239 10242 15813 15813 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698913574219 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 34.766 1 34.766 34.266 35.266 0 0 0 0 0.21486 1 6369 6369 1.8442 0 1 15700 4996 10239 10242 15814 15814 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16546630859375 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 35.423 1 35.423 34.923 35.923 0 0 0 0 0.21486 1 6503 6503 1.8442 0 1 15701 4996 10239 10242 15815 15815 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17022705078125 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 35.721 1 35.721 35.221 36.221 0 0 0 0 0.21486 1 6565 6565 1.8442 0 1 15702 4996 10239 10242 15816 15816 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16973876953125 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 37.104 1 37.104 36.604 37.604 0 0 0 0 0.21486 1 6854 6854 1.8442 0 1 15703 4996 10239 10242 15817 15817 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 38.931 1 38.931 38.431 39.431 0 0 0 0 0.21486 1 7223 7223 1.8442 0 1 15704 4996 10239 10242 15818 15818 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16973876953125 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 47.045 1 47.045 46.545 47.545 0 0 0 0 0.21486 1 8866 8866 1.8442 0 1 15705 4996 10239 10242 15819 15819 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1695556640625 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 48.388 1 48.388 47.888 48.888 0 0 0 0 0.23711 1 9137 9137 0.62683 0 1 15706 4996 10239 10242 15820 15820 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16961669921875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 48.678 1 48.678 48.178 49.178 0 0 0 0 0.23711 1 9194 9194 0.62683 0 1 15707 4996 10239 10242 15821 15821 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697692871094 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 52.351 1 52.351 51.851 52.851 0 0 0 0 0.21486 1 9949 9949 1.8442 0 1 15708 4996 10239 10242 15822 15822 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651611328125 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 53.673 1 53.673 53.173 54.173 0 0 0 0 0.21486 1 10225 10225 1.8442 0 1 15709 4996 10239 10242 15823 15823 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 54.148 1 54.148 53.648 54.648 0 0 0 0 0.21486 1 10324 10324 1.8442 0 1 15710 4996 10239 10242 15824 15824 0.018796052197103563 FVSWVPPP 8 Unmodified _FVSWVPPP_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1695251464844 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 54.397 1 54.397 53.897 54.897 0 0 0 0 0.21486 1 10372 10372 1.8442 0 1 15711 4996 10239 10242 15825 15825 0.018796052197103563 FVTMKDDT 8 Unmodified _FVTMKDDT_ 0 0 0 REV__ENSG00000185038|ENST00000389758|MROH2A REV__ENSG00000185038|ENST00000389758|MROH2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72271728515625 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 82.58 1 82.58 82.08 83.08 0 0 0 0 0.21486 1 16092 16092 11.64 0.81637 1 + 15712 18933 10240 10243 15826 15826 -0.04741560345121343 FVVLAYVRV 9 Unmodified _FVVLAYVRV_ 0 0 0 REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1 REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2737426757812 2 533.326402 1064.63825 NaN NaN NaN NaN NaN NaN NaN 175.93 1 171.03 170.53 171.53 -4.9008 0 0 0 0.19632 1 35069 35069 0.073264 0 1 + 15713 24671 10241 10244 15827 15827 0.10851800616319451 FVVLAYVRV 9 Unmodified _FVVLAYVRV_ 0 0 0 REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1 REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2737426757812 2 533.326402 1064.63825 NaN NaN NaN NaN NaN NaN NaN 175.94 1 171.04 170.54 171.54 -4.9008 0 0 0 0.23508 1 35072 35072 2.0598 1.3694 1 + 15714 24671 10241 10244 15828 15828 0.10851800616319451 FVVLAYVRV 9 Unmodified _FVVLAYVRV_ 0 0 0 REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1 REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2752075195312 2 533.326402 1064.63825 NaN NaN NaN NaN NaN NaN NaN 177.59 1 172.68 172.18 173.18 -4.9088 0 0 0 0.19632 1 35417 35417 0.073264 0 1 + 15715 24671 10241 10244 15829 15829 0.10851800616319451 FVVMRKGL 8 Unmodified _FVVMRKGL_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1861267089844 3 317.193241 948.557893 NaN NaN NaN NaN NaN NaN NaN 87.92 1 87.92 87.42 88.42 0 0 0 0 0.21486 1 17157 17157 1.6526 0 1 + 15716 15567 10242 10245 15830 15830 0.08155616021645073 FVVMRKGL 8 Unmodified _FVVMRKGL_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.18603515625 3 317.193241 948.557893 NaN NaN NaN NaN NaN NaN NaN 96.156 1 91.921 91.421 92.421 -4.2348 0 0 0 0.21486 1 18359 18359 0.40072 0 1 + 15717 15567 10242 10245 15831 15831 0.08155616021645073 FVVMRKGL 8 Unmodified _FVVMRKGL_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1940002441406 3 317.193241 948.557893 NaN NaN NaN NaN NaN NaN NaN 96.801 1 92.566 92.066 93.066 -4.2348 0 0 0 0.21486 1 18484 18484 0.40072 0 1 + 15718 15567 10242 10245 15832 15832 0.08155616021645073 FVVPLLKK 8 Unmodified _FVVPLLKK_ 0 0 0 REV__ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant REV__ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.2315368652344 3 315.216151 942.626624 NaN NaN NaN NaN NaN NaN NaN 176.91 1 172.12 171.62 172.62 -4.7898 0 0 0 0.21486 1 36182 36182 0 0 1 + 15719 14280 10243 10246 15833 15833 0.15301603593002255 FVVPLLKK 8 Unmodified _FVVPLLKK_ 0 0 0 REV__ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant REV__ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.21697998046875 3 315.216151 942.626624 NaN NaN NaN NaN NaN NaN NaN 74.719 1 71.125 70.625 71.625 -3.594 0 0 0 0.21486 1 14195 14195 0 0 1 + 15720 14280 10243 10246 15834 15834 0.15301603593002255 FVWTFWRTRLW 11 Unmodified _FVWTFWRTRLW_ 0 0 0 ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2699584960938 3 533.285739 1596.83539 NaN NaN NaN NaN NaN NaN NaN 72.328 1 72.328 71.828 72.828 0 0 0 0 0.22632 1 14023 14023 0.6275 0.59609 1 15721 10342 10244 10247 15835 15835 0.06084400159124925 FVWTFWRTRLW 11 Unmodified _FVWTFWRTRLW_ 0 0 0 ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2724609375 3 533.285739 1596.83539 NaN NaN NaN NaN NaN NaN NaN 129.42 1 129.42 128.92 129.92 0 0 0 0 0.22632 1 25569 25569 0.58532 0.079364 1 15722 10342 10244 10247 15836 15836 0.06084400159124925 FVWTFWRTRLW 11 Unmodified _FVWTFWRTRLW_ 0 0 0 ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2803344726562 3 533.285739 1596.83539 NaN NaN NaN NaN NaN NaN NaN 172.84 1 172.84 172.34 173.34 0 0 0 0 0.22632 1 35704 35704 0.026206 0 1 15723 10342 10244 10247 15837 15837 0.06084400159124925 FVWTFWRTRLW 11 Unmodified _FVWTFWRTRLW_ 0 0 0 ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2852783203125 3 533.285739 1596.83539 0.4865 0.00025945 -3.2563 -0.0017366 -2.7698 -0.0014771 533.2842827969249 145.27 0.103 140.21 140.15 140.25 -5.0671 4 2 2 0 0 0 0.82662 1 28075 28075 0.094841 0.011491 1 2000600 15724 10342 10244 10247 15838 15838 0.06084400159124925 FVWTFWRTRLW 11 Unmodified _FVWTFWRTRLW_ 0 0 0 ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2710571289062 3 533.285739 1596.83539 NaN NaN NaN NaN NaN NaN NaN 137.94 1 133.1 132.6 133.6 -4.84 0 0 0 0.22632 1 26581 26581 0.50596 0.50539 1 15725 10342 10244 10247 15839 15839 0.06084400159124925 FWAFLKVS 8 Unmodified _FWAFLKVS_ 0 0 0 ENST00000559757.1_1_15:59157477-59323038:+|nuORF ENST00000559757.1_1_15:59157477-59323038:+|nuORF ENST00000559757.1_1_15:59157477-59323038:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.2168884277344 3 333.188373 996.543289 NaN NaN NaN NaN NaN NaN NaN 93.349 1 89.359 88.859 89.859 -3.9907 0 0 0 0.21486 1 18282 18282 1.4819 0 1 15726 11276 10245 10248 15840 15840 0.04487867145144264 FWFFFPYNHYY 11 Unmodified _FWFFFPYNHYY_ 0 0 0 REV__ENST00000605924.5_1_13:52793665-52801187:-|nuORF REV__ENST00000605924.5_1_13:52793665-52801187:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3831787109375 2 815.861338 1629.70812 NaN NaN NaN NaN NaN NaN NaN 166.96 1 166.96 166.46 167.46 0 0 0 0 0.23698 1 34078 34078 0.35063 0.081612 1 + 15727 23454 10246 10249 15841 15841 -0.0815436550569757 FWFPLSHFLSL 11 Unmodified _FWFPLSHFLSL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24981689453125 3 465.248291 1392.72304 NaN NaN NaN NaN NaN NaN NaN 118.24 1 113.83 113.33 114.33 -4.4088 0 0 0 0.22632 1 22753 22753 1.4074 0 1 15728 6305;12839 10247 10250 15842 15842 0.04239126362267598 FWHYLFFFTKW 11 Unmodified _FWHYLFFFTKW_ 0 0 0 REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2734985351562 3 541.271207 1620.79179 NaN NaN NaN NaN NaN NaN NaN 95.656 1 95.656 95.156 96.156 0 0 0 0 0.22632 1 18738 18738 0.094841 0 1 + 15729 23757 10248 10251 15843 15843 0.00622790661941508 FWHYLFFFTKW 11 Unmodified _FWHYLFFFTKW_ 0 0 0 REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2718505859375 3 541.271207 1620.79179 0.28857 0.00015619 3.1971 0.0017305 3.4856 0.0018867 541.2724458681206 146.43 0.24107 141.75 141.57 141.81 -4.6868 9 6 2 0 0 0 0.66242 3 29038 29007;29038;29041 1.3296 1.2463 1 8493100 + 15730 23757 10248 10251 15844;15845;15846 15845 0.00622790661941508 FWHYLFFFTKW 11 Unmodified _FWHYLFFFTKW_ 0 0 0 REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3861083984375 2 811.403173 1620.79179 NaN NaN NaN NaN NaN NaN NaN 139.64 1 134.99 134.49 135.49 -4.6439 0 0 0 0.23698 1 27568 27568 1.1933 0.92432 1 + 15731 23757 10248 10251 15847 15847 0.00622790661941508 FWHYLFFFTKW 11 Unmodified _FWHYLFFFTKW_ 0 0 0 REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.273193359375 3 541.271207 1620.79179 NaN NaN NaN NaN NaN NaN NaN 19.04 1 17.714 17.214 18.214 -1.3251 0 0 0 0.22632 1 2882 2882 0.094841 0.087559 1 + 15732 23757 10248 10251 15848 15848 0.00622790661941508 FWHYLFFFTKW 11 Unmodified _FWHYLFFFTKW_ 0 0 0 REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2685546875 3 541.271207 1620.79179 0.35126 0.00019012 -2.8743 -0.0015558 -2.523 -0.0013656 541.6053438678722 140.72 0.24237 135.86 135.77 136.01 -4.8678 9 6 2 0 0 0 0.81901 1 27159 27159 1.1098 1.0149 1 2429700 + 15733 23757 10248 10251 15849 15849 0.00622790661941508 FWHYLFFFTKW 11 Unmodified _FWHYLFFFTKW_ 0 0 0 REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 541.271207 1620.79179 0.28857 0.00015619 3.1971 0.0017305 3.4856 0.0018867 541.2724458681206 146.43 0.24107 141.75 141.57 141.81 -4.6868 0 0 NaN 1.3296 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 8493100 + 15734 23757 10248 10251 0.00622790661941508 FWIREDEKREK 11 Unmodified _FWIREDEKREK_ 0 0 0 CECR2|p.N841Tfs*59|2|0.35|ENSG00000099954|chr22:17542597-17542597|C/-|frameshift_variant;ENSG00000099954|ENST00000262608|CECR2;nc|ENSG00000099954|Q9BXF3|CECR2 CECR2|p.N841Tfs*59|2|0.35|ENSG00000099954|chr22:17542597-17542597|C/-|frameshift_variant CECR2|p.N841Tfs*59|2|0.35|ENSG00000099954|chr22:17542597-17542597|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.0190124511719 5 307.965122 1534.78923 -2.2938 -0.00070642 -0.52894 -0.0001629 -2.8228 -0.00086932 307.96519017857986 7.5788 1.0799 6.564 6.0019 7.0818 -1.0148 38 30 2 0 0 0 0.96228 1 709 709 0 0 1 80682 15735 477 10249 10252 15850 15850 0.04322290466325285 FWKKIVFVI 9 Unmodified _FWKKIVFVI_ 0 0 0 OR4C16|p.T76Nfs*3|1|0.14|ENSG00000279514|chr11:55572351-55572352|-/A|frameshift_variant;ENSG00000279514|ENST00000623907|OR4C16 OR4C16|p.T76Nfs*3|1|0.14|ENSG00000279514|chr11:55572351-55572352|-/A|frameshift_variant OR4C16|p.T76Nfs*3|1|0.14|ENSG00000279514|chr11:55572351-55572352|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2567138671875 2 590.36807 1178.72159 NaN NaN NaN NaN NaN NaN NaN 121.71 1 117.16 116.66 117.66 -4.5476 0 0 0 0.19624 1 23989 23989 0.073264 0.073264 1 15736 8049 10250 10253 15851 15851 0.13937537064180106 FWKTWIFWKTW 11 Unmodified _FWKTWIFWKTW_ 0 0 0 nc|ENSG00000288642|P51861|CDR1 nc|ENSG00000288642|P51861|CDR1 nc|ENSG00000288642|P51861|CDR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.361328125 2 814.924272 1627.83399 NaN NaN NaN NaN NaN NaN NaN 164.76 1 159.7 159.2 160.2 -5.0648 0 0 0 0.23698 1 32152 32152 0.96228 0.65524 1 15737 12654 10251 10254 15852 15852 0.04518766070350466 FWNWNSDL 8 Unmodified _FWNWNSDL_ 0 0 0 REV__ENST00000395449.7_1_11:47187835-47198404:-|nuORF REV__ENST00000395449.7_1_11:47187835-47198404:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.1628112792969 3 361.162775 1080.46649 NaN NaN NaN NaN NaN NaN NaN 114.04 1 109.49 108.99 109.99 -4.555 0 0 0 0.23312 1 21893 21893 6.2058 1.3088 1 + 15738 17000 10252 10255 15853 15853 -0.07051976141997329 FWPRWRRWPP 10 Unmodified _FWPRWRRWPP_ 0 0 0 REV__ENST00000532024.1_1_11:70118214-70118385:+|nuORF REV__ENST00000532024.1_1_11:70118214-70118385:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3994140625 2 742.396548 1482.77854 NaN NaN NaN NaN NaN NaN NaN 139.42 1 134.57 134.07 135.07 -4.8492 0 0 0 0.22588 1 26877 26877 1.4819 0.28856 1 + 15739 22778 10253 10256 15854 15854 0.056463973932523004 FWQWFDGV 8 Unmodified _FWQWFDGV_ 0 0 0 STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant;STAT5B|p.K583Nfs*16|2|0.34|ENSG00000173757|chr17:42210429-42210429|T/-|frameshift_variant;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468496.5_1_17:40362419-40369297:-|nuORF;ENST00000555222.5_1_12:57492966-57496222:-|nuORF;ENST00000591556.1_1_17:40458135-40460407:+|nuORF;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENSG00000166888|ENST00000300134|STAT6;STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6 STAT5B|p.H584Tfs*8|3|0.33|ENSG00000173757|chr17:42210428-42210429|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 362.1661376953125 3 362.167749 1083.48142 NaN NaN NaN NaN NaN NaN NaN 179.91 1 174.99 174.49 175.49 -4.9114 0 0 0 0.21486 1 35902 35902 1.6526 1.1943 1 15740 3436;5760 10254 10257 15855 15855 -0.05698484274012117 FWREPFCRWWK 11 Unmodified _FWREPFCRWWK_ 0 0 0 REV__nc|nan|Q6UWU4-3|C6orf89 REV__nc|nan|Q6UWU4-3|C6orf89 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7734375 3 547.602962 1639.78706 0.34484 0.00018884 -1.2107 -0.00066299 -0.86587 -0.00047415 547.6018967086086 156.76 0.21397 151.97 151.81 152.02 -4.7885 6 5 2 0 0 0 0.89122 1 31181 31181 0.50596 0 1 770190 + 15741 19431 10255 10258 15856 15856 -0.007244167524504519 FWRKRKHYSLS 11 Unmodified _FWRKRKHYSLS_ 0 0 0 ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENST00000583028.1_1_17:62175367-62207458:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 503.280517578125 3 503.280877 1506.8208 NaN NaN NaN NaN NaN NaN NaN 155.88 1 150.59 150.09 151.09 -5.2854 0 0 0 0.22632 1 30236 30236 0.172 0.077159 1 15742 11512 10256 10259 15857 15857 0.08766328011006408 FWRLPYTRAQM 11 Unmodified _FWRLPYTRAQM_ 0 0 0 REV__nc|ENSG00000167711|P08697-2|SERPINF2 REV__nc|ENSG00000167711|P08697-2|SERPINF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25823974609375 3 490.255451 1467.74452 NaN NaN NaN NaN NaN NaN NaN 126.94 1 122.24 121.74 122.74 -4.6998 0 0 0 0.22632 1 24420 24420 5.4027 0.79896 1 + 15743 17960 10257 10260 15858 15858 0.02936188119315375 FWRNAWLLRFR 11 Unmodified _FWRNAWLLRFR_ 0 0 0 HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|82|1|anti-sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|82|1|anti-sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|82|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2640380859375 3 522.293117 1563.85752 NaN NaN NaN NaN NaN NaN NaN 97.505 1 97.505 97.005 98.005 0 0 0 0 0.22632 1 19109 19109 0.50596 0.49867 1 15744 11899 10258 10261 15859 15859 0.09814624627506419 FWRQNLPWLFY 11 Unmodified _FWRQNLPWLFY_ 0 0 0 ENSG00000164953|ENST00000453321|TMEM67;TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant ENSG00000164953|ENST00000453321|TMEM67 ENSG00000164953|ENST00000453321|TMEM67 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6896362304688 3 523.938228 1568.79285 -0.40574 -0.00021258 -1.2369 -0.00064807 -1.6427 -0.00086065 523.9377178377628 23.239 0.49995 21.451 21.026 21.526 -1.7886 25 14 4 0 0 0 0.81621 1 3683 3683 0.50596 0.051438 1 684110 15745 5582 10259 10262 15860 15860 0.031210050309027793 FWRQNLPWLFY 11 Unmodified _FWRQNLPWLFY_ 0 0 0 ENSG00000164953|ENST00000453321|TMEM67;TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant ENSG00000164953|ENST00000453321|TMEM67 ENSG00000164953|ENST00000453321|TMEM67 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 523.938228 1568.79285 0.17443 9.1393E-05 -1.6412 -0.00085987 -1.4667 -0.00076848 523.9372866157361 21.426 0.37195 21.426 21.194 21.566 0 -0.014889 -0.00017017 NaN 0.50596 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1188600 15746 5582 10259 10262 0.031210050309027793 FWRQNLPWLFY 11 Unmodified _FWRQNLPWLFY_ 0 0 0 ENSG00000164953|ENST00000453321|TMEM67;TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant ENSG00000164953|ENST00000453321|TMEM67 ENSG00000164953|ENST00000453321|TMEM67 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 523.938228 1568.79285 0.56682 0.00029698 -2.0688 -0.0010839 -1.502 -0.00078694 523.9370596715365 23.034 0.38071 21.48 21.234 21.614 -1.5532 0.039957 -0.00084232 NaN 0.50596 24 10 4 NaN NaN NaN NaN 0 NaN NaN 0 1178800 15747 5582 10259 10262 0.031210050309027793 FWRWFQKEKN 10 Unmodified _FWRWFQKEKN_ 0 0 0 REV__SLC25A31|p.P217Afs*28|1|0.42|ENSG00000151475|chr4:127768762-127768763|-/A|frameshift_variant REV__SLC25A31|p.P217Afs*28|1|0.42|ENSG00000151475|chr4:127768762-127768763|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25726318359375 3 490.254328 1467.74115 NaN NaN NaN NaN NaN NaN NaN 21.509 1 20.035 19.535 20.535 -1.4742 0 0 0 2.8426 1 3641 3641 0.043787 0 1 + 15748 17070 10260 10263 15861 15861 0.025992613369908213 FWTWSPLWYRQ 11 Unmodified _FWTWSPLWYRQ_ 0 0 0 REV__ENST00000399151.3_1_21:37642452-37650333:+|nuORF REV__ENST00000399151.3_1_21:37642452-37650333:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3822631835938 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 141.92 1 136.93 136.43 137.43 -4.9877 0 0 0 0.23698 1 27337 27337 1.3295 0.13619 1 + 15749 21336 10261 10264 15862 15862 -0.005158718658321959 FWVLCSQR 8 Unmodified _FWVLCSQR_ 0 0 0 ENST00000368761.9_1_6:111912933-111913005:-|nuORF ENST00000368761.9_1_6:111912933-111913005:-|nuORF ENST00000368761.9_1_6:111912933-111913005:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 347.1991271972656 3 346.8445 1037.51167 -1.7243 -0.00059808 3.4947 0.0012121 1.7704 0.00061405 346.8458948762093 19.25 0.20917 17.615 17.529 17.739 -1.6351 8 5 2 0 0 0 0.8956 1 2907 2907 0.12286 0 1 156560 15750 9101 10262 10265 15863 15863 -0.0055844888047431596 FWWKLSNMKKT 11 Unmodified _FWWKLSNMKKT_ 0 0 0 REV__ENST00000296121.5_1_3:44795781-44795838:-|nuORF REV__ENST00000296121.5_1_3:44795781-44795838:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26422119140625 3 490.263835 1467.76968 NaN NaN NaN NaN NaN NaN NaN 45.224 1 45.224 44.724 45.724 0 0 0 0 0.22632 1 8497 8497 5.4027 2.3304 1 + 15751 20372 10263 10266 15864 15864 0.054502429218700854 FWWWNRTWWSS 11 Unmodified _FWWWNRTWWSS_ 0 0 0 REV__ENST00000573520.5_1_16:4521405-4524561:-|nuORF REV__ENST00000573520.5_1_16:4521405-4524561:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7816772460938 3 547.917716 1640.73132 NaN NaN NaN NaN NaN NaN NaN 161.19 1 156.39 155.89 156.89 -4.7952 0 0 0 0.22632 1 32055 32055 0.094841 0.094841 1 + 15752 20321 10264 10267 15865 15865 -0.06341926668414999 FWWYWQKENIP 11 Unmodified _FWWYWQKENIP_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2730712890625 3 532.925988 1595.75613 0.50913 0.00027133 -0.96084 -0.00051205 -0.4517 -0.00024072 532.9263870906373 128.87 0.28607 124.05 123.84 124.13 -4.817 10 7 2 0 0 0 0.66234 1 24737 24737 0.50596 0 1 1370300 15753 11828 10265 10268 15866 15866 -0.01791291585664112 FWYLLQRRFRL 11 Unmodified _FWYLLQRRFRL_ 0 0 0 REV__nc|ENSG00000100979|P55058-2|PLTP REV__nc|ENSG00000100979|P55058-2|PLTP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2685546875 3 533.308655 1596.90414 NaN NaN NaN NaN NaN NaN NaN 135.04 1 135.04 134.54 135.54 0 0 0 0 0.22632 1 26743 26743 0.00056442 0 1 + 15754 23973 10266 10269 15867 15867 0.12956064458785477 FWYLRFWFWSF 11 Unmodified _FWYLRFWFWSF_ 0 0 0 REV__nc|ENSG00000223802|P27544-2|CERS1 REV__nc|ENSG00000223802|P27544-2|CERS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3778686523438 2 842.908622 1683.80269 NaN NaN NaN NaN NaN NaN NaN 39.265 1 36.86 36.36 37.36 -2.4049 0 0 0 0.23698 1 7006 7006 0 0 1 + 15755 19716 10267 10270 15868 15868 -0.011858069637582958 FYAAAFQN 8 Unmodified _FYAAAFQN_ 0 0 0 REV__ENST00000577705.1_3_18:21723126-21728540:+|nuORF REV__ENST00000577705.1_3_18:21723126-21728540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.14788818359375 3 311.148466 930.423567 NaN NaN NaN NaN NaN NaN NaN 152.39 1 147.64 147.14 148.14 -4.7523 0 0 0 0.21486 1 30282 30282 0.45834 0 1 + 15756 17164 10268 10271 15869 15869 -0.044427461994359874 FYAAAFQN 8 Unmodified _FYAAAFQN_ 0 0 0 REV__ENST00000577705.1_3_18:21723126-21728540:+|nuORF REV__ENST00000577705.1_3_18:21723126-21728540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2223815917969 3 311.148466 930.423567 NaN NaN NaN NaN NaN NaN NaN 120.19 1 115.72 115.22 116.22 -4.467 0 0 0 0.21486 1 23139 23139 0.45834 0 1 + 15757 17164 10268 10271 15870 15870 -0.044427461994359874 FYAPNEVLE 9 Unmodified _FYAPNEVLE_ 0 0 0 REV__sp|Q6SW31|UL120_HCMVMMembraneproteinUL120OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL120PE=3SV=1 REV__sp|Q6SW31|UL120_HCMVMMembraneproteinUL120OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL120PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2650146484375 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 24.255 1 22.701 22.201 23.201 -1.5532 0 0 0 0.1963 1 4217 4217 0.029283 0 1 + 15758 24722 10269 10272 15871 15871 -0.024259560305836203 FYDVKGDTV 9 Unmodified _FYDVKGDTV_ 0 0 0 REV__ENST00000475243.5_1_20:57021752-57021950:+|nuORF REV__ENST00000475243.5_1_20:57021752-57021950:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2732543945312 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 126.96 1 126.96 126.46 127.46 0 0 0 0 0.23508 1 25058 25058 10.824 3.5347 1 + 15759 22094 10270 10273 15872 15872 -0.022422425476406715 FYENERKLYHK 11 Unmodified _FYENERKLYHK_ 0 0 0 REV__tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1 REV__tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 509.59661865234375 3 509.596531 1525.76776 NaN NaN NaN NaN NaN NaN NaN 168.35 1 168.35 167.85 168.85 0 0 0 0 0.22632 1 34470 34470 0.00056442 0 1 + 15760 25142 10271 10274 15873 15873 0.02590905437659785 FYENRERDYDD 11 Unmodified _FYENRERDYDD_ 0 0 0 REV__nc|ENSG00000171126|Q8TAE7-2|KCNG3 REV__nc|ENSG00000171126|Q8TAE7-2|KCNG3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 507.87896728515625 3 507.879543 1520.6168 NaN NaN NaN NaN NaN NaN NaN 11.412 1 11.412 10.912 11.912 0 0 0 0 0.23698 1 1511 1511 0 0 1 + 15761 18203 10272 10275 15874 15874 -0.1226832573165666 FYESDRRRERR 11 Unmodified _FYESDRRRERR_ 0 0 0 TAPT1|p.K545Nfs*10|1|0.09|ENSG00000169762|chr4:16163377-16163377|T/-|frameshift_variant;nc|ENSG00000169762|Q6NXT6-2|TAPT1;ENSG00000169762|ENST00000405303|TAPT1 TAPT1|p.K545Nfs*10|1|0.09|ENSG00000169762|chr4:16163377-16163377|T/-|frameshift_variant TAPT1|p.K545Nfs*10|1|0.09|ENSG00000169762|chr4:16163377-16163377|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4031982421875 2 785.403286 1568.79202 NaN NaN NaN NaN NaN NaN NaN 20.629 1 19.232 18.732 19.732 -1.3966 0 0 0 0.22632 1 3456 3456 0 0 1 15762 6005 10273 10276 15875 15875 0.030375586438594837 FYEVERQRL 9 Unmodified _FYEVERQRL_ 0 0 0 REV__nc|ENSG00000121417|Q13398-3|ZNF211 REV__nc|ENSG00000121417|Q13398-3|ZNF211 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.9186096191406 4 310.667469 1238.64077 -0.49129 -0.00015263 0.91717 0.00028494 0.42588 0.00013231 310.66757629697224 34.591 0.20825 34.591 34.517 34.725 0 8 5 2 0 0 0 0.83274 1 6348 6348 0.26902 0 1 225860 + 15763 24018 10274 10277 15876 15876 0.03099604283329427 FYEWNIKLGWK 11 Unmodified _FYEWNIKLGWK_ 0 0 0 ENST00000394457.7_2_2:61406101-61411861:+|nuORF;nc|ENSG00000293434|Q719I0|AHSA2P ENST00000394457.7_2_2:61406101-61411861:+|nuORF ENST00000394457.7_2_2:61406101-61411861:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3871459960938 2 742.390262 1482.76597 NaN NaN NaN NaN NaN NaN NaN 170.29 1 165.38 164.88 165.88 -4.9149 0 0 0 0.23476 1 33664 33664 4.5289 1.2476 1 15764 9413 10275 10278 15877 15877 0.04389896419661454 FYFNREVWWFK 11 Unmodified _FYFNREVWWFK_ 0 0 0 REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2720947265625 3 541.269866 1620.78777 NaN NaN NaN NaN NaN NaN NaN 132.85 1 132.85 132.35 133.35 0 0 0 0 0.22632 1 26269 26269 0.50596 0.33396 1 + 15765 20370 10276 10279 15878 15878 0.00220701168245796 FYFNREVWWFK 11 Unmodified _FYFNREVWWFK_ 0 0 0 REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2676391601562 3 541.269866 1620.78777 NaN NaN NaN NaN NaN NaN NaN 133.23 1 133.23 132.73 133.73 0 0 0 0 0.22632 1 26356 26356 1.4551 1.4289 1 + 15766 20370 10276 10279 15879 15879 0.00220701168245796 FYFNREVWWFK 11 Unmodified _FYFNREVWWFK_ 0 0 0 REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.263427734375 3 541.269866 1620.78777 NaN NaN NaN NaN NaN NaN NaN 156.88 1 152.09 151.59 152.59 -4.7885 0 0 0 0.22632 1 31198 31198 0.50596 0.41111 1 + 15767 20370 10276 10279 15880 15880 0.00220701168245796 FYFNREVWWFK 11 Unmodified _FYFNREVWWFK_ 0 0 0 REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.269287109375 3 541.269866 1620.78777 NaN NaN NaN NaN NaN NaN NaN 166.1 1 161.31 160.81 161.81 -4.7898 0 0 0 0.22632 1 33326 33326 0.172 0.077159 1 + 15768 20370 10276 10279 15881 15881 0.00220701168245796 FYFNREVWWFK 11 Unmodified _FYFNREVWWFK_ 0 0 0 REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2670288085938 3 541.269866 1620.78777 NaN NaN NaN NaN NaN NaN NaN 133.61 1 128.73 128.23 129.23 -4.8726 0 0 0 0.22632 1 25674 25674 0.50596 0.33396 1 + 15769 20370 10276 10279 15882 15882 0.00220701168245796 FYFNREVWWFK 11 Unmodified _FYFNREVWWFK_ 0 0 0 REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2711181640625 3 541.269866 1620.78777 NaN NaN NaN NaN NaN NaN NaN 160.06 1 154.83 154.33 155.33 -5.2299 0 0 0 0.22632 1 31071 31071 0.094841 0 1 + 15770 20370 10276 10279 15883 15883 0.00220701168245796 FYFNREVWWFK 11 Unmodified _FYFNREVWWFK_ 0 0 0 REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2705688476562 3 541.269866 1620.78777 NaN NaN NaN NaN NaN NaN NaN 124.2 1 119.61 119.11 120.11 -4.5926 0 0 0 0.22632 1 23902 23902 3.0723 2.4869 1 + 15771 20370 10276 10279 15884 15884 0.00220701168245796 FYFNREVWWFK 11 Unmodified _FYFNREVWWFK_ 0 0 0 REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.269287109375 3 541.269866 1620.78777 NaN NaN NaN NaN NaN NaN NaN 128.94 1 124.2 123.7 124.7 -4.7408 0 0 0 0.22632 1 24813 24813 0.50596 0.47975 1 + 15772 20370 10276 10279 15885 15885 0.00220701168245796 FYFNREVWWFK 11 Unmodified _FYFNREVWWFK_ 0 0 0 REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2696533203125 3 541.269866 1620.78777 NaN NaN NaN NaN NaN NaN NaN 148.27 1 143.21 142.71 143.71 -5.0595 0 0 0 0.22632 1 28718 28718 0.094841 0 1 + 15773 20370 10276 10279 15886 15886 0.00220701168245796 FYFNREVWWFK 11 Unmodified _FYFNREVWWFK_ 0 0 0 REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF REV__ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.270263671875 3 541.269866 1620.78777 NaN NaN NaN NaN NaN NaN NaN 170.72 1 165.85 165.35 166.35 -4.873 0 0 0 0.22632 1 33799 33799 0.094841 0 1 + 15774 20370 10276 10279 15887 15887 0.00220701168245796 FYFSNLRP 8 Unmodified _FYFSNLRP_ 0 0 0 ENSG00000170178|ENST00000406506|HOXD12;nc|ENSG00000170178|P35452-2|HOXD12;HOXD12|p.A197Rfs*43|3|0.24|ENSG00000170178|chr2:176100531-176100531|G/-|frameshift_variant ENSG00000170178|ENST00000406506|HOXD12 ENSG00000170178|ENST00000406506|HOXD12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2717895507812 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 35.55 1 33.273 32.773 33.773 -2.2766 0 0 0 0.22674 1 6253 6253 14.838 8.6325 1 15775 6046 10277 10280 15888 15888 0.004054911343473577 FYFWYLEECW 10 Unmodified _FYFWYLEECW_ 0 0 0 ENST00000265870.7_1_10:70248298-70276562:-|nuORF ENST00000265870.7_1_10:70248298-70276562:-|nuORF ENST00000265870.7_1_10:70248298-70276562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 495.75921630859375 3 495.877647 1484.61111 NaN NaN NaN NaN NaN NaN NaN 14.601 1 13.428 12.928 13.928 -1.173 0 0 0 2.8426 1 1986 1986 0.13989 0.04505 1 15776 8368 10278 10281 15889 15889 -0.11181095777010341 FYGGIFNN 8 Unmodified _FYGGIFNN_ 0 0 0 REV__C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant REV__C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.1752624511719 3 311.148466 930.423567 NaN NaN NaN NaN NaN NaN NaN 75.104 1 71.51 71.01 72.01 -3.594 0 0 0 0.21486 1 14274 14274 1.6526 0.58116 1 + 15777 13224 10279 10282 15890 15890 -0.04442746199424619 FYGIVGGI 8 Unmodified _FYGIVGGI_ 0 0 0 REV__tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1 REV__tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 413.16949462890625 2 413.228897 824.44324 NaN NaN NaN NaN NaN NaN NaN 13.626 1 12.617 12.117 13.117 -1.0098 0 0 0 0.2396 1 1989 1989 0 0 1 + 15778 24893 10280 10283 15891 15891 0.023996298113388548 FYGLIPDH 8 Unmodified _FYGLIPDH_ 0 0 0 REV__tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1 REV__tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2421569824219 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 175.78 1 170.99 170.49 171.49 -4.7898 0 0 0 0.23749 1 35941 35941 0.12286 0 1 + 15779 24861 10281 10284 15892 15892 -0.011298866483002712 FYGLIPDH 8 Unmodified _FYGLIPDH_ 0 0 0 REV__tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1 REV__tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2418518066406 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 175.37 1 170.49 169.99 170.99 -4.8845 0 0 0 0.23749 1 34876 34876 0.12286 0 1 + 15780 24861 10281 10284 15893 15893 -0.011298866483002712 FYGLIPDH 8 Unmodified _FYGLIPDH_ 0 0 0 REV__tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1 REV__tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.242431640625 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 175.83 1 170.96 170.46 171.46 -4.8739 0 0 0 0.21486 1 34967 34967 2.5775 0 1 + 15781 24861 10281 10284 15894 15894 -0.011298866483002712 FYGSFRDALQ 10 Unmodified _FYGSFRDALQ_ 0 0 0 REV__nc|ENSG00000123191|P35670-3|ATP7B REV__nc|ENSG00000123191|P35670-3|ATP7B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2913818359375 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 97.369 1 93.272 92.772 93.772 -4.0978 0 0 0 2.8426 1 19105 19105 0.20733 0 1 + 15782 15721 10282 10285 15895 15895 -0.021160600163966592 FYGYLPDQTQG 11 Unmodified _FYGYLPDQTQG_ 0 0 0 REV__ENST00000489079.1_1_7:87840172-87856229:-|nuORF REV__ENST00000489079.1_1_7:87840172-87856229:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1376037597656 4 322.901568 1287.57717 0.19581 6.3227E-05 -3.3223 -0.0010728 -3.1265 -0.0010096 322.89950144207904 179.18 0.69061 174.31 173.74 174.43 -4.868 30 19 2 0 0 0 0.82427 1 35678 35678 0.40827 0.17242 1 1656000 + 15783 14325 10283 10286 15896 15896 -0.055118009444413474 FYHLWRYFHRP 11 Unmodified _FYHLWRYFHRP_ 0 0 0 ENST00000528063.5_1_11:66049809-66051065:+|nuORF;ENST00000531936.1_1_11:66050146-66051065:+|nuORF;ENSG00000174871|ENST00000311445|CNIH2 ENST00000528063.5_1_11:66049809-66051065:+|nuORF ENST00000528063.5_1_11:66049809-66051065:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2765502929688 3 541.277355 1620.81024 NaN NaN NaN NaN NaN NaN NaN 17.434 1 16.162 15.662 16.662 -1.2722 0 0 0 0.22632 1 2568 2568 0.094841 0.094841 1 15784 6375 10284 10287 15897 15897 0.02466345356515376 FYHLWRYFHRP 11 Unmodified _FYHLWRYFHRP_ 0 0 0 ENST00000528063.5_1_11:66049809-66051065:+|nuORF;ENST00000531936.1_1_11:66050146-66051065:+|nuORF;ENSG00000174871|ENST00000311445|CNIH2 ENST00000528063.5_1_11:66049809-66051065:+|nuORF ENST00000528063.5_1_11:66049809-66051065:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2767944335938 3 541.277355 1620.81024 NaN NaN NaN NaN NaN NaN NaN 157.23 1 151.95 151.45 152.45 -5.2712 0 0 0 0.22632 1 30500 30500 0.094841 0 1 15785 6375 10284 10287 15898 15898 0.02466345356515376 FYHSLINNS 9 Unmodified _FYHSLINNS_ 0 0 0 REV__ENST00000472714.1_1_7:107564398-107569844:-|nuORF REV__ENST00000472714.1_1_7:107564398-107569844:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7728271484375 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 145.77 1 141.08 140.58 141.58 -4.6868 0 0 0 0.21469 1 28898 28898 19.257 0 1 + 15786 22058 10285 10288 15899 15899 -0.023760180791896346 FYKKTYKQP 9 Unmodified _FYKKTYKQP_ 0 0 0 ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1 ENST00000558123.5_1_15:41625112-41672381:+|nuORF ENST00000558123.5_1_15:41625112-41672381:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2925415039062 2 601.832049 1201.64954 0.40011 0.0002408 -3.7463 -0.0022546 -3.3462 -0.0020138 601.8288086025062 166.66 0.10332 166.66 166.58 166.68 0 4 2 2 0 0 0 0.64382 1 33974 33974 10.074 3.3508 1 15737000 15787 4111 10286 10289 15900 15900 0.056785779197980446 FYKRLNQRERR 11 Unmodified _FYKRLNQRERR_ 0 0 0 SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant;SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6;ENST00000474906.2_1_6:76388527-76407234:+|nuORF SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2728271484375 3 522.630569 1564.86988 0.1889 9.8723E-05 0.9265 0.00048422 1.1154 0.00058294 522.9646196571474 119.44 0.13606 119.44 119.34 119.48 0 6 3 2 0 0 0 0.89126 1 23532 23532 0.0059557 0 1 1863200 15788 2706 10287 10290 15901 15901 0.11003616299899477 FYLFFFMSRRR 11 Unmodified _FYLFFFMSRRR_ 0 0 0 REV__ENST00000370114.7_1_1:101360988-101361132:-|nuORF REV__ENST00000370114.7_1_1:101360988-101361132:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4108276367188 2 785.411006 1568.80746 NaN NaN NaN NaN NaN NaN NaN 161.87 1 156.72 156.22 157.22 -5.1438 0 0 0 0.23698 1 31436 31436 1.3295 0.13619 1 + 15789 20972 10288 10291 15902 15902 0.04580753907362123 FYLLPGDEL 9 Unmodified _FYLLPGDEL_ 0 0 0 ENST00000496915.1_1_20:47258682-47259061:-|nuORF ENST00000496915.1_1_20:47258682-47259061:-|nuORF ENST00000496915.1_1_20:47258682-47259061:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2870483398438 2 533.776408 1065.53826 0.16214 8.6547E-05 2.6947 0.0014384 2.8569 0.0015249 534.277935043668 26.992 0.10453 25.07 24.984 25.088 -1.9222 4 2 2 0 0 0 0.8319 1 4482 4482 12.532 5.2423 1 214130 15790 10585 10289 10292 15903 15903 0.008115184918551677 FYLQRYNFRWW 11 Unmodified _FYLQRYNFRWW_ 0 0 0 REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4572143554688 2 839.91751 1677.82047 NaN NaN NaN NaN NaN NaN NaN 172.25 1 167.35 166.85 167.85 -4.8977 0 0 0 0.23698 1 34158 34158 0 0 1 + 15791 21884 10290 10293 15904 15904 0.008669082910955694 FYLRKRKFYLR 11 Unmodified _FYLRKRKFYLR_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 795.5025024414062 2 795.474995 1588.93544 NaN NaN NaN NaN NaN NaN NaN 168.21 1 163.42 162.92 163.92 -4.7898 0 0 0 0.23698 1 33988 33988 0.30703 0 1 15792 8872 10291 10294 15905 15905 0.16452637492920985 FYLRRLKYPKW 11 Unmodified _FYLRRLKYPKW_ 0 0 0 REV__nc|ENSG00000086991|Q9NPH5-3|NOX4 REV__nc|ENSG00000086991|Q9NPH5-3|NOX4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3892211914062 2 785.456271 1568.89799 NaN NaN NaN NaN NaN NaN NaN 169.56 1 169.56 169.06 170.06 0 0 0 0 0.23698 1 34807 34807 1.3295 1.0225 1 + 15793 14490 10292 10295 15906 15906 0.13629546227298306 FYLRRLKYPKW 11 Unmodified _FYLRRLKYPKW_ 0 0 0 REV__nc|ENSG00000086991|Q9NPH5-3|NOX4 REV__nc|ENSG00000086991|Q9NPH5-3|NOX4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.395263671875 2 785.456271 1568.89799 NaN NaN NaN NaN NaN NaN NaN 115.48 1 111.01 110.51 111.51 -4.4726 0 0 0 0.22632 1 22765 22765 0.094841 0.094841 1 + 15794 14490 10292 10295 15907 15907 0.13629546227298306 FYNLAQDVEY 10 Unmodified _FYNLAQDVEY_ 0 0 0 REV__ENSG00000174010|ENST00000328046|KLHL15 REV__ENSG00000174010|ENST00000328046|KLHL15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 421.3355407714844 3 421.196033 1260.56627 0.13365 5.6292E-05 -0.14545 -6.1263E-05 -0.011802 -4.9708E-06 421.1960041744813 36.747 0.4673 36.747 36.525 36.993 0 39 12 4 0 0 0 0.91149 1 6767 6767 1.9064 0 1 7450500 + 15795 18386 10293 10296 15908 15908 -0.05359203318721484 FYNVLVSS 8 Unmodified _FYNVLVSS_ 0 0 0 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 101.27 1 97.279 96.779 97.779 -3.9895 0 0 0 0.23899 1 19460 19460 0.62683 0.41997 1 + 15796 25440 10294 10297 15909 15909 0.00354693631857117 FYPLFPANP 9 Unmodified _FYPLFPANP_ 0 0 0 ENST00000465076.5_1_10:75531037-75531319:+|nuORF ENST00000465076.5_1_10:75531037-75531319:+|nuORF ENST00000465076.5_1_10:75531037-75531319:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2741088867188 2 533.273835 1064.53312 0.52859 0.00028188 -1.0838 -0.00057797 -0.55522 -0.00029608 533.2731740295371 95.31 0.55351 91.119 90.825 91.378 -4.1911 21 15 2 0 0 0 0.37087 1 18217 18217 2.6312 2.2516 1 1539500 15797 10115 10295 10298 15910 15910 0.0034325941990118736 FYPLQDWPGSV 11 Unmodified _FYPLQDWPGSV_ 0 0 0 REV__ENST00000251166.8_1_16:4404662-4404824:-|nuORF REV__ENST00000251166.8_1_16:4404662-4404824:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2271423339844 3 436.880156 1307.61864 0.45654 0.00019945 0.41928 0.00018318 0.87582 0.00038263 436.87932896088336 110.3 0.44927 106.12 105.82 106.27 -4.1826 20 12 2 0 0 0 0.60781 1 21241 21241 5.4027 4.1524 1 502280 + 15798 20110 10296 10299 15911 15911 -0.02286620185122956 FYQKADHTL 9 Unmodified _FYQKADHTL_ 0 0 0 nc|ENSG00000162819|Q5VW32-2|BROX;ENSG00000162819|ENST00000340934|BROX nc|ENSG00000162819|Q5VW32-2|BROX nc|ENSG00000162819|Q5VW32-2|BROX MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21270751953125 3 374.857463 1121.55056 0.37389 0.00014016 -0.59813 -0.00022421 -0.22423 -8.4055E-05 374.8572634748341 88.46 1.8132 84.465 84.083 85.896 -3.9953 176 51 6 0 0 0 0.85359 1 17059 17059 11.495 1.9507 1 268810000 15799 5373 10297 10300 15912 15912 -0.005354450451022785 FYQRFRHFQYH 11 Unmodified _FYQRFRHFQYH_ 0 0 0 ENSG00000196652|ENST00000326775|ZKSCAN5;ZKSCAN5|p.K317Efs*21|1|0.25|ENSG00000196652|chr7:99525984-99525985|-/G|frameshift_variant;ZKSCAN5|p.R547Tfs*4|1|0.06|ENSG00000196652|chr7:99531366-99531367|-/AACATTTCTTT|frameshift_variant;ZKSCAN5|p.K541Nfs*52|1|0.32|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant;ZKSCAN5|p.N691Mfs*12|1|0.45|ENSG00000196652|chr7:99531795-99531795|A/-|frameshift_variant ENSG00000196652|ENST00000326775|ZKSCAN5 ENSG00000196652|ENST00000326775|ZKSCAN5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7822875976562 3 543.600498 1627.77966 NaN NaN NaN NaN NaN NaN NaN 143.2 1 143.2 142.7 143.7 0 0 0 0 0.23698 1 28570 28570 0.50596 0.09769 1 15800 7296 10298 10301 15913 15913 -0.009114330285001415 FYQWWRTWPSL 11 Unmodified _FYQWWRTWPSL_ 0 0 0 REV__OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant REV__OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3858032226562 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 25.884 1 25.884 25.384 26.384 0 0 0 0 0.23698 1 4511 4511 0.35063 0 1 + 15801 24408 10299 10302 15914 15914 -0.005158718658321959 FYQWWRTWPSL 11 Unmodified _FYQWWRTWPSL_ 0 0 0 REV__OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant REV__OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.385498046875 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 136.82 1 131.98 131.48 132.48 -4.8386 0 0 0 0.23698 1 26351 26351 0.35063 0 1 + 15802 24408 10299 10302 15915 15915 -0.005158718658321959 FYREYFRDWGM 11 Unmodified _FYREYFRDWGM_ 0 0 0 ENST00000357429.10_1_7:1036850-1037003:-|nuORF ENST00000357429.10_1_7:1036850-1037003:-|nuORF ENST00000357429.10_1_7:1036850-1037003:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3948364257812 2 785.350811 1568.68707 NaN NaN NaN NaN NaN NaN NaN 119.18 1 114.68 114.18 115.18 -4.502 0 0 0 0.2367 1 23502 23502 2.9952 0.26005 1 15803 8981 10300 10303 15916 15916 -0.0745269887690938 FYRQTRRRERE 11 Unmodified _FYRQTRRRERE_ 0 0 0 REV__nc|ENSG00000163491|Q6ZWH5-7|NEK10 REV__nc|ENSG00000163491|Q6ZWH5-7|NEK10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2612915039062 3 532.953711 1595.8393 0.091909 4.8983E-05 1.7428 0.00092884 1.8347 0.00097782 532.9556457681475 133.86 0.17117 133.86 133.77 133.94 0 6 4 2 0 0 0 0.82427 1 26484 26484 0.40827 0.31342 1 1642200 + 15804 17576 10301 10304 15917 15917 0.06521837914874595 FYRSSNAS 8 Unmodified _FYRSSNAS_ 0 0 0 ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.N537Kfs*2|2|0.18|ENSG00000023516|chr13:42300349-42300350|-/A|frameshift_variant;AKAP11|p.H747Tfs*7|1|0.07|ENSG00000023516|chr13:42300981-42300981|T/-|frameshift_variant;AKAP11|p.S919Pfs*33|1|0.11|ENSG00000023516|chr13:42301498-42301498|T/-|frameshift_variant;AKAP11|p.N964Mfs*17|1|0.38|ENSG00000023516|chr13:42301633-42301633|A/-|frameshift_variant;AKAP11|p.C1327Lfs*13|1|0.05|ENSG00000023516|chr13:42302724-42302725|-/CTTCTACTTTATAATC|frameshift_variant;AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant;AKAP11|p.H1753Ifs*3|1|0.11|ENSG00000023516|chr13:42308589-42308589|T/-|frameshift_variant;AKAP11|p.N537Ifs*8|1|0.1|ENSG00000023516|chr13:42300350-42300350|A/-|frameshift_variant ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.N537Ifs*8|1|0.1|ENSG00000023516|chr13:42300350-42300350|A/-|frameshift_variant AKAP11|p.N537Ifs*8|1|0.1|ENSG00000023516|chr13:42300350-42300350|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.11712646484375 3 311.147125 930.419545 NaN NaN NaN NaN NaN NaN NaN 151.25 1 146.01 145.51 146.51 -5.2365 0 0 0 0.21486 1 29315 29315 1.6526 0 1 15805 1132;110 10302 10305 15918 15918 -0.04844835693143068 FYTPFFARNF 10 Unmodified _FYTPFFARNF_ 0 0 0 REV__tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1 REV__tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2296447753906 3 437.216991 1308.62914 NaN NaN NaN NaN NaN NaN NaN 113.37 1 108.84 108.34 109.34 -4.5259 0 0 0 2.8426 1 21764 21764 0.0013812 0 1 + 15806 24893 10303 10306 15919 15919 -0.012825927399944703 FYVPLCIMAF 10 Unmodified _FYVPLCIMAF_ 0 0 0 ENSG00000043591|ENST00000369295|ADRB1 ENSG00000043591|ENST00000369295|ADRB1 ENSG00000043591|ENST00000369295|ADRB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3009643554688 2 602.300681 1202.58681 NaN NaN NaN NaN NaN NaN NaN 142.24 1 137.59 137.09 138.09 -4.656 0 0 0 0.22588 1 28113 28113 7.9102 1.187 1 15807 1208 10304 10307 15920 15920 -0.006380274642651784 FYVQQCLRF 9 Unmodified _FYVQQCLRF_ 0 0 0 REV__ENST00000566215.5_1_15:25652322-25653778:-|nuORF REV__ENST00000566215.5_1_15:25652322-25653778:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2752075195312 2 602.302601 1202.59065 NaN NaN NaN NaN NaN NaN NaN 141.75 1 137.11 136.61 137.61 -4.6493 0 0 0 0.23508 1 28007 28007 7.9102 1.187 1 + 15808 23118 10305 10308 15921 15921 -0.0025422164619612886 FYWWIGHSLQP 11 Unmodified _FYWWIGHSLQP_ 0 0 0 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7293701171875 3 478.571545 1432.69281 NaN NaN NaN NaN NaN NaN NaN 124.9 1 120.25 119.75 120.75 -4.6495 0 0 0 0.2326 1 24032 24032 6.2344 1.8282 1 15809 6949 10306 10309 15922 15922 -0.006232323029280451 FYWYEEEESFH 11 Unmodified _FYWYEEEESFH_ 0 0 0 NOX3|p.F260Vfs*22|1|0.17|ENSG00000074771|chr6:155436438-155436439|-/C|frameshift_variant;NOX3|p.Q345Rfs*49|1|0.44|ENSG00000074771|chr6:155428906-155428906|G/-|frameshift_variant;NOX3|p.F349Sfs*45|1|0.12|ENSG00000074771|chr6:155428893-155428893|A/-|frameshift_variant;ENSG00000074771|ENST00000159060|NOX3 NOX3|p.F260Vfs*22|1|0.17|ENSG00000074771|chr6:155436438-155436439|-/C|frameshift_variant NOX3|p.F260Vfs*22|1|0.17|ENSG00000074771|chr6:155436438-155436439|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2744140625 3 522.545502 1564.61468 NaN NaN NaN NaN NaN NaN NaN 170.76 1 165.97 165.47 166.47 -4.7898 0 0 0 0.22632 1 34677 34677 0.094841 0 1 15810 1504 10307 10310 15923 15923 -0.1450475446947621 FYYNFQVRGIY 11 Unmodified _FYYNFQVRGIY_ 0 0 0 ADGRD1|p.V26I|1|0.24|ENSG00000111452|chr12:130954633-130954633|G/A|missense_variant ADGRD1|p.V26I|1|0.24|ENSG00000111452|chr12:130954633-130954633|G/A|missense_variant ADGRD1|p.V26I|1|0.24|ENSG00000111452|chr12:130954633-130954633|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27093505859375 3 490.578588 1468.71394 NaN NaN NaN NaN NaN NaN NaN 14.163 1 14.163 13.663 14.663 0 0 0 0 0.22632 1 2093 2093 1.4551 0.75745 1 15811 75 10308 10311 15924 15924 -0.0016726699404898682 GAAAAGGLY 9 Unmodified _GAAAAGGLY_ 0 0 0 ENST00000446119.2_1_17:60759570-60767382:+|nuORF ENST00000446119.2_1_17:60759570-60767382:+|nuORF ENST00000446119.2_1_17:60759570-60767382:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21875 2 375.692678 749.370804 0.054703 2.0551E-05 -0.015033 -5.6478E-06 0.03967 1.4904E-05 375.69260071788074 53.241 0.9179 50.153 49.689 50.607 -3.0876 61 25 3 0 0 0 0.80737 1 9774 9774 5.2307 0 1 6543800 15812 9940 10309 10312 15925 15925 -0.013907042622349763 GAAASPEL 8 Unmodified _GAAASPEL_ 0 0 0 TPPP|p.A50V|1|0.41|ENSG00000171368|chr5:677912-677912|G/A|missense_variant;ENSG00000171368|ENST00000360578|TPPP TPPP|p.A50V|1|0.41|ENSG00000171368|chr5:677912-677912|G/A|missense_variant TPPP|p.A50V|1|0.41|ENSG00000171368|chr5:677912-677912|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 358.1859130859375 2 358.184686 714.354819 NaN NaN NaN NaN NaN NaN NaN 139.02 1 134.07 133.57 134.57 -4.952 0 0 0 0.21452 1 26742 26742 13.508 0 1 15813 6140 10310 10313 15926 15926 -0.01378410499137317 GAAEGFATEG 10 Unmodified _GAAEGFATEG_ 0 0 0 ENST00000590244.1_1_17:58543761-58603427:-|nuORF ENST00000590244.1_1_17:58543761-58603427:-|nuORF ENST00000590244.1_1_17:58543761-58603427:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 910.3980102539062 1 909.394852 908.387576 0.54507 0.00049568 -0.23882 -0.00021719 0.30624 0.0002785 909.3946002554682 35.694 0.76049 35.694 35.31 36.07 0 39 21 3 0 0 0 0.51199 1 6514 6514 24.021 9.1823 1 4107500 15814 11598 10311 10314 15927 15927 -0.0702824816694374 GAAEGFATEG 10 Unmodified _GAAEGFATEG_ 0 0 0 ENST00000590244.1_1_17:58543761-58603427:-|nuORF ENST00000590244.1_1_17:58543761-58603427:-|nuORF ENST00000590244.1_1_17:58543761-58603427:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.398681640625 1 909.394852 908.387576 0.34328 0.00031218 0.082879 7.537E-05 0.42616 0.00038755 909.3949852222235 38.103 0.83217 35.752 35.384 36.216 -2.3509 38 23 2 0 0 0 0.48672 1 6760 6760 25.399 1.3787 1 4319200 15815 11598 10311 10314 15928 15928 -0.0702824816694374 GAAGGTPP 8 Unmodified _GAAGGTPP_ 0 0 0 MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant;MCTP1|p.K875Rfs*4|3|0.53|ENSG00000175471|chr5:94714873-94714873|T/-|frameshift_variant;ENSG00000175471|ENST00000515393|MCTP1;MCTP1|p.D177Tfs*66|1|0.12|ENSG00000175471|chr5:95284047-95284047|C/-|frameshift_variant MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1573486328125 2 314.158471 626.30239 NaN NaN NaN NaN NaN NaN NaN 148.35 1 143.19 142.69 143.69 -5.1557 0 0 0 0.21486 1 28719 28719 2.5775 1.7838 1 15816 6414 10312 10315 15929 15929 -0.02570948842094367 GAAGGTPP 8 Unmodified _GAAGGTPP_ 0 0 0 MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant;MCTP1|p.K875Rfs*4|3|0.53|ENSG00000175471|chr5:94714873-94714873|T/-|frameshift_variant;ENSG00000175471|ENST00000515393|MCTP1;MCTP1|p.D177Tfs*66|1|0.12|ENSG00000175471|chr5:95284047-95284047|C/-|frameshift_variant MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1444396972656 2 314.158471 626.30239 NaN NaN NaN NaN NaN NaN NaN 23.982 1 22.193 21.693 22.693 -1.7886 0 0 0 0.21486 1 3883 3883 2.8892 2.0956 1 15817 6414 10312 10315 15930 15930 -0.02570948842094367 GAAKVTLD 8 Unmodified _GAAKVTLD_ 0 0 0 REV__ENST00000338637.11_1_X:47696338-47705572:+|nuORF REV__ENST00000338637.11_1_X:47696338-47705572:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7203369140625 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 148.69 1 143.63 143.13 144.13 -5.0595 0 0 0 0.23312 1 28803 28803 3.5871 0 1 + 15818 20683 10313 10316 15931 15931 0.03254137943326896 GAAKVTLD 8 Unmodified _GAAKVTLD_ 0 0 0 REV__ENST00000338637.11_1_X:47696338-47705572:+|nuORF REV__ENST00000338637.11_1_X:47696338-47705572:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7208557128906 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 170.09 1 165.22 164.72 165.72 -4.873 0 0 0 0.23584 1 33641 33641 1.7423 0 1 + 15819 20683 10313 10316 15932 15932 0.03254137943326896 GAALQAQQE 9 Unmodified _GAALQAQQE_ 0 0 0 REV__ENSG00000151690|ENST00000392328|MFSD6 REV__ENSG00000151690|ENST00000392328|MFSD6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2302551269531 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.797 1 40.146 39.646 40.646 -2.651 0 0 0 0.19687 1 7713 7713 8.1555 1.5252 1 + 15820 17078 10314 10317 15933 15933 -0.0148856652166387 GAAVGLRM 8 Unmodified _GAAVGLRM_ 0 0 0 ENST00000506649.5_1_6:109702953-109703094:-|nuORF ENST00000506649.5_1_6:109702953-109703094:-|nuORF ENST00000506649.5_1_6:109702953-109703094:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7196044921875 2 387.718173 773.421793 NaN NaN NaN NaN NaN NaN NaN 164.87 1 160.08 159.58 160.58 -4.7898 0 0 0 0.22684 1 32976 32976 1.7423 0 1 15821 10684 10315 10318 15934 15934 0.026019215109727156 GAAWCCCCC 9 Unmodified _GAAWCCCCC_ 0 0 0 REV__ENST00000561457.2_1_9:139008415-139008820:-|nuORF REV__ENST00000561457.2_1_9:139008415-139008820:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2456359863281 2 460.123022 918.231491 NaN NaN NaN NaN NaN NaN NaN 15.624 1 14.271 13.771 14.771 -1.3534 0 0 0 0.23508 1 2164 2164 0 0 1 + 15822 23054 10316 10319 15935 15935 -0.2308951580109806 GACGKPKT 8 Unmodified _GACGKPKT_ 0 0 0 REV__ENST00000537568.1_1_12:16747235-16762728:-|nuORF REV__ENST00000537568.1_1_12:16747235-16762728:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2145080566406 2 381.202356 760.390159 NaN NaN NaN NaN NaN NaN NaN 42.561 1 42.561 42.061 43.061 0 0 0 0 0.23487 1 7962 7962 0.62683 0 1 + 15823 14074 10317 10320 15936 15936 0.00037928757001282065 GACSTRDK 8 Unmodified _GACSTRDK_ 0 0 0 ENST00000373001.3_1_1:39305098-39305170:-|nuORF ENST00000373001.3_1_1:39305098-39305170:-|nuORF ENST00000373001.3_1_1:39305098-39305170:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 420.2136535644531 2 419.197802 836.381051 -0.38139 -0.00015988 1.2659 0.00053066 0.8845 0.00037078 419.19825593698147 54.629 0.6475 51.745 51.428 52.075 -2.8837 45 18 3 0 0 0 8448 1 10425 10425 0.12286 0.058877 1 22091000 15824 9189 10318 10321 15937 15937 -0.043684645993153026 GACSTRDK 8 Unmodified _GACSTRDK_ 0 0 0 ENST00000373001.3_1_1:39305098-39305170:-|nuORF ENST00000373001.3_1_1:39305098-39305170:-|nuORF ENST00000373001.3_1_1:39305098-39305170:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 419.197802 836.381051 0.1755 7.3568E-05 0.73705 0.00030897 0.91254 0.00038254 419.19805333282886 51.647 0.63306 51.647 51.372 52.005 0 0.047746 -0.00027612 NaN 0.12286 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 23011000 15825 9189 10318 10321 -0.043684645993153026 GACSTRDK 8 Unmodified _GACSTRDK_ 0 0 0 ENST00000373001.3_1_1:39305098-39305170:-|nuORF ENST00000373001.3_1_1:39305098-39305170:-|nuORF ENST00000373001.3_1_1:39305098-39305170:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 419.197802 836.381051 0.032696 1.3706E-05 0.88963 0.00037293 0.92233 0.00038664 419.19805575722376 54.675 0.70634 51.539 51.181 51.887 -3.1352 -0.059979 -0.0001482 NaN 0.12286 44 19 3 NaN NaN NaN NaN 0 NaN NaN 0 17702000 15826 9189 10318 10321 -0.043684645993153026 GACSTRDK 8 Unmodified _GACSTRDK_ 0 0 0 ENST00000373001.3_1_1:39305098-39305170:-|nuORF ENST00000373001.3_1_1:39305098-39305170:-|nuORF ENST00000373001.3_1_1:39305098-39305170:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 419.197802 836.381051 -0.36544 -0.00015319 1.383 0.00057977 1.0176 0.00042657 419.1982293298721 54.604 0.76625 51.466 51.101 51.867 -3.1377 -0.13342 0.00026548 NaN 0.12286 51 21 3 NaN NaN NaN NaN 0 NaN NaN 0 15220000 15827 9189 10318 10321 -0.043684645993153026 GADCCCAA 8 Unmodified _GADCCCAA_ 0 0 0 REV__ENST00000572844.1_1_17:7400282-7400360:+|nuORF REV__ENST00000572844.1_1_17:7400282-7400360:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.10479736328125 2 357.10621 712.197866 NaN NaN NaN NaN NaN NaN NaN 4.7575 1 3.7487 3.2487 4.2487 -1.0089 0 0 0 0.21486 1 128 128 0 0 1 + 15828 23179 10319 10322 15938 15938 -0.16974477976998514 GADIRKRL 8 Unmodified _GADIRKRL_ 0 0 0 LIPG|p.H205R|1|0.09|ENSG00000101670|chr18:49575411-49575411|A/G|missense_variant LIPG|p.H205R|1|0.09|ENSG00000101670|chr18:49575411-49575411|A/G|missense_variant LIPG|p.H205R|1|0.09|ENSG00000101670|chr18:49575411-49575411|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650390625 3 310.194409 927.561398 NaN NaN NaN NaN NaN NaN NaN 45.361 1 42.495 41.995 42.995 -2.8653 0 0 0 0.23881 1 8231 8231 0.063987 0 1 15829 12079 10320 10323 15939 15939 0.09472002119832723 GADPHIHVKY 10 Unmodified _GADPHIHVKY_ 0 0 0 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 568.7958984375 2 568.795998 1135.57744 NaN NaN NaN NaN NaN NaN NaN 44.61 1 41.862 41.362 42.362 -2.7475 0 0 0 0.22588 1 8078 8078 10.824 1.4408 1 + 15830 19874 10321 10324 15940 15940 0.015076635660989268 GADSKTVKL 9 Unmodified _GADSKTVKL_ 0 0 0 ENSG00000055483|ENST00000449938|USP36;USP36|p.K688Nfs*35|1|0.21|ENSG00000055483|chr17:78806980-78806980|T/-|frameshift_variant ENSG00000055483|ENST00000449938|USP36 ENSG00000055483|ENST00000449938|USP36 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2404479980469 2 459.766374 917.518196 0.29133 0.00013394 -1.3045 -0.00059975 -1.0131 -0.0004658 459.7655991404985 26.686 0.51419 26.686 26.53 27.044 0 18 14 2 0 0 0 0.545 1 4675 4675 23.79 9.8837 1 982760 15831 1272 10322 10325 15941 15941 0.056137675519039476 GAECYEDCCL 10 Unmodified _GAECYEDCCL_ 0 0 0 CFAP46|p.G1318C|1|0.46|ENSG00000171811|chr10:132879479-132879479|C/A|missense_variant CFAP46|p.G1318C|1|0.46|ENSG00000171811|chr10:132879479-132879479|C/A|missense_variant CFAP46|p.G1318C|1|0.46|ENSG00000171811|chr10:132879479-132879479|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 369.523681640625 3 369.126016 1104.35622 -0.54048 -0.00019951 -0.93701 -0.00034587 -1.4775 -0.00054538 369.1254104095817 39.196 1.4386 36.647 35.768 37.206 -2.5491 68 40 4 0 0 0 1.1313 1 7378 7378 0.063865 0 1 1019700 15832 501 10323 10326 15942 15942 -0.19178648579236324 GAEPVTEMEIQ 11 Unmodified _GAEPVTEMEIQ_ 0 0 0 REV__ENSG00000159905|ENST00000587682|ZNF221 REV__ENSG00000159905|ENST00000587682|ZNF221 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2821044921875 2 602.281728 1202.5489 NaN NaN NaN NaN NaN NaN NaN 152.32 1 147.57 147.07 148.07 -4.7523 0 0 0 0.1873 1 30266 30266 1.4074 0.56249 1 + 15833 17386 10324 10327 15943 15943 -0.0442686691601466 GAERTWIS 8 Unmodified _GAERTWIS_ 0 0 0 REV__FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;REV__nc|ENSG00000136068|O75369-7|FLNB REV__nc|ENSG00000136068|O75369-7|FLNB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.1911926269531 2 460.235242 918.45593 0.028603 1.3164E-05 1.1788 0.00054254 1.2074 0.0005557 460.2358384610171 58.073 0.56619 54.821 54.465 55.032 -3.2517 23 15 2 0 0 0 8448 1 10736 10736 0.063987 0 1 560700 + 15834 16311;15927 10325 10328 15944 15944 -0.006559587964147795 GAEWAPPP 8 Unmodified _GAEWAPPP_ 0 0 0 ENST00000460881.5_1_20:36845335-36845915:-|nuORF;ENST00000487506.1_1_20:36841446-36845915:-|nuORF ENST00000460881.5_1_20:36845335-36845915:-|nuORF ENST00000460881.5_1_20:36845335-36845915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 412.87091064453125 2 412.700503 823.386454 NaN NaN NaN NaN NaN NaN NaN 28.772 1 28.772 28.272 29.272 0 0 0 0 0.21486 1 5121 5121 6.3541 0 1 15835 10061 10326 10329 15945 15945 -0.0323041774520334 GAFHALSF 8 Unmodified _GAFHALSF_ 0 0 0 GPR26|p.V277Cfs*33|1|0.55|ENSG00000154478|chr10:123687970-123687970|G/-|frameshift_variant;ENSG00000154478|ENST00000284674|GPR26 GPR26|p.V277Cfs*33|1|0.55|ENSG00000154478|chr10:123687970-123687970|G/-|frameshift_variant GPR26|p.V277Cfs*33|1|0.55|ENSG00000154478|chr10:123687970-123687970|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2426452636719 2 425.216321 848.418088 NaN NaN NaN NaN NaN NaN NaN 133.85 1 128.98 128.48 129.48 -4.8726 0 0 0 0.22934 1 25718 25718 1.7423 0 1 15836 5013 10327 10330 15946 15946 -0.012184249912479572 GAFVGNGK 8 Unmodified _GAFVGNGK_ 0 0 0 REV__ENST00000215917.11_2_22:26884434-26886106:+|nuORF REV__ENST00000215917.11_2_22:26884434-26886106:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2177734375 2 375.20067 748.386788 NaN NaN NaN NaN NaN NaN NaN 23.482 1 21.693 21.193 22.193 -1.7886 0 0 0 0.21486 1 3778 3778 5.2307 2.3415 1 + 15837 20001 10328 10331 15947 15947 0.002530019746814105 GAGASTEE 8 Unmodified _GAGASTEE_ 0 0 0 nc|ENSG00000182557|Q6ZMD2-2|SPNS3;ENSG00000182557|ENST00000355530|SPNS3 nc|ENSG00000182557|Q6ZMD2-2|SPNS3 nc|ENSG00000182557|Q6ZMD2-2|SPNS3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.15362548828125 2 361.153583 720.292613 NaN NaN NaN NaN NaN NaN NaN 94.236 1 94.236 93.736 94.736 0 0 0 0 0.23899 1 18452 18452 1.3295 0 1 15838 6793 10329 10332 15948 15948 -0.07872181638140319 GAGCGKRL 8 Unmodified _GAGCGKRL_ 0 0 0 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2093505859375 2 381.207973 760.401392 NaN NaN NaN NaN NaN NaN NaN 24.615 1 24.615 24.115 25.115 0 0 0 0 0.21486 1 4246 4246 10.183 7.2942 1 + 15839 14735 10330 10333 15949 15949 0.011607508511474407 GAGCPHRLGTD 11 Unmodified _GAGCPHRLGTD_ 0 0 0 REV__ENST00000546058.1_1_12:132626298-132626882:-|nuORF REV__ENST00000546058.1_1_12:132626298-132626882:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7877197265625 2 542.25364 1082.49273 0.042404 2.2994E-05 -0.62468 -0.00033874 -0.58228 -0.00031574 542.253242396384 112.86 0.92667 108.4 107.98 108.9 -4.4539 73 25 4 0 0 0 0.5519 1 22203 22203 0.03141 0 1 16713000 + 15840 22893 10331 10334 15950 15950 -0.04522030242173969 GAGGACGAR 9 Unmodified _GAGGACGAR_ 0 0 0 ENSG00000134508|ENST00000256925|CABLES1 ENSG00000134508|ENST00000256925|CABLES1 ENSG00000134508|ENST00000256925|CABLES1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2117919921875 2 360.166305 718.318056 NaN NaN NaN NaN NaN NaN NaN 50.549 1 47.497 46.997 47.997 -3.0517 0 0 0 0.19656 1 9294 9294 0.40827 0 1 15841 3857 10332 10335 15951 15951 -0.05236985596695831 GAGHCCCV 8 Unmodified _GAGHCCCV_ 0 0 0 FHOD3|p.D280Rfs*29|1|0.35|ENSG00000134775|chr18:36611973-36611974|-/A|frameshift_variant FHOD3|p.D280Rfs*29|1|0.35|ENSG00000134775|chr18:36611973-36611974|-/A|frameshift_variant FHOD3|p.D280Rfs*29|1|0.35|ENSG00000134775|chr18:36611973-36611974|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2060852050781 2 375.130019 748.245485 NaN NaN NaN NaN NaN NaN NaN 85.178 1 81.514 81.014 82.014 -3.6641 0 0 0 0.21486 1 16652 16652 2.8892 2.0956 1 15842 11817 10333 10336 15952 15952 -0.13870778986131427 GAGLATPP 8 Unmodified _GAGLATPP_ 0 0 0 nc|ENSG00000069998|Q9BXW7-2|HDHD5;ENSG00000069998|ENST00000336737|HDHD5;ENST00000486462.1_1_22:17618913-17622310:-|nuORF;ENST00000477157.5_1_22:17618913-17622310:-|nuORF nc|ENSG00000069998|Q9BXW7-2|HDHD5 nc|ENSG00000069998|Q9BXW7-2|HDHD5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.19036865234375 2 342.189771 682.36499 NaN NaN NaN NaN NaN NaN NaN 65.394 1 61.935 61.435 62.435 -3.4581 0 0 0 0.23025 1 12234 12234 3.5871 1.8448 1 15843 1422 10334 10337 15953 15953 0.01110197226080345 GAGRTGCFIAI 11 Unmodified _GAGRTGCFIAI_ 0 0 0 PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant;ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2769165039062 2 533.279126 1064.5437 NaN NaN NaN NaN NaN NaN NaN 45.664 1 42.824 42.324 43.324 -2.8409 0 0 0 0.22632 1 8607 8607 8.4443 0.28878 1 15844 7232 10335 10338 15954 15954 0.01400918802664819 GAGTSTLL 8 Unmodified _GAGTSTLL_ 0 0 0 ENST00000530404.5_3_11:843499-843670:+|nuORF ENST00000530404.5_3_11:843499-843670:+|nuORF ENST00000530404.5_3_11:843499-843670:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20123291015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 68.294 1 68.294 67.794 68.794 0 0 0 0 0.21486 1 13203 13203 2.8892 0 1 15845 10955 10336 10339 15955 15955 0.015661625349594033 GAKASAKG 8 Unmodified _GAKASAKG_ 0 0 0 ENST00000332012.5_1_17:79278372-79278921:-|nuORF;nc|ENSG00000185168|Q8N8I6|LINC00482 ENST00000332012.5_1_17:79278372-79278921:-|nuORF ENST00000332012.5_1_17:79278372-79278921:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.226806640625 2 345.20067 688.386788 NaN NaN NaN NaN NaN NaN NaN 99.908 1 99.908 99.408 100.41 0 0 0 0 0.23025 1 19595 19595 1.7423 0 1 15846 8783 10337 10340 15956 15956 0.03013001974670715 GAKGKGGG 8 Unmodified _GAKGKGGG_ 0 0 0 ENST00000569326.2_1_8:145724500-145725055:-|nuORF ENST00000569326.2_1_8:145724500-145725055:-|nuORF ENST00000569326.2_1_8:145724500-145725055:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7640991210938 1 631.3522 630.344923 0.96342 0.00060826 1.2716 0.00080281 2.235 0.0014111 631.3530966760142 101.85 0.82779 97.664 97.062 97.89 -4.1861 36 23 2 0 0 0 1.028 1 19909 19909 0 0 1 2756900 15847 11406 10338 10341 15957 15957 0.014964462861485117 GAKGKGGG 8 Unmodified _GAKGKGGG_ 0 0 0 ENST00000569326.2_1_8:145724500-145725055:-|nuORF ENST00000569326.2_1_8:145724500-145725055:-|nuORF ENST00000569326.2_1_8:145724500-145725055:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 631.3522 630.344923 0.44539 0.0002812 2.2729 0.001435 2.7183 0.0017162 631.3535415895249 97.429 1.212 97.429 96.598 97.81 0 -0.19378 0.00014822 NaN 0 43 34 2 NaN NaN NaN NaN 0 NaN NaN 0 3728700 15848 11406 10338 10341 0.014964462861485117 GAKGKGGG 8 Unmodified _GAKGKGGG_ 0 0 0 ENST00000569326.2_1_8:145724500-145725055:-|nuORF ENST00000569326.2_1_8:145724500-145725055:-|nuORF ENST00000569326.2_1_8:145724500-145725055:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 631.3522 630.344923 0.56355 0.0003558 2.2152 0.0013985 2.7787 0.0017543 631.3535399863517 102.01 1.2595 97.689 96.856 98.115 -4.3208 0.066502 0.00011178 NaN 0 45 36 2 NaN NaN NaN NaN 0 NaN NaN 0 3343700 15849 11406 10338 10341 0.014964462861485117 GAKGKGGG 8 Unmodified _GAKGKGGG_ 0 0 0 ENST00000569326.2_1_8:145724500-145725055:-|nuORF ENST00000569326.2_1_8:145724500-145725055:-|nuORF ENST00000569326.2_1_8:145724500-145725055:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 631.3522 630.344923 0.682 0.00043058 2.0064 0.0012667 2.6884 0.0016973 631.353324334982 101.73 1.147 97.708 97.104 98.251 -4.0212 0.086038 -2.0035E-05 NaN 0 71 32 3 NaN NaN NaN NaN 0 NaN NaN 0 13574000 15850 11406 10338 10341 0.014964462861485117 GAKKKKKKKK 10 Unmodified _GAKKKKKKKK_ 0 0 0 ENST00000406961.5_1_2:24991338-24991476:+|nuORF ENST00000406961.5_1_2:24991338-24991476:+|nuORF ENST00000406961.5_1_2:24991338-24991476:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 586.3797607421875 2 586.4217 1170.82885 NaN NaN NaN NaN NaN NaN NaN 167.39 1 162.5 162 163 -4.8916 0 0 0 0.22588 1 32913 32913 0.40072 0.40072 1 15851 9548 10339 10342 15958 15958 0.25026506998392506 GAKMVNAA 8 Unmodified _GAKMVNAA_ 0 0 0 nc|ENSG00000144460|Q9P242|NYAP2;ENSG00000144460|ENST00000272907|NYAP2 nc|ENSG00000144460|Q9P242|NYAP2 nc|ENSG00000144460|Q9P242|NYAP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2118225097656 2 381.202356 760.390159 NaN NaN NaN NaN NaN NaN NaN 127.54 0.99999 122.74 122.24 123.24 -4.7958 0 0 0 0.23711 1 24478 24478 0.12286 0.058877 1 15852 4555 10340 10343 15959 15959 0.0003792875701265075 GAKWNKYDP 9 Unmodified _GAKWNKYDP_ 0 0 0 REV__ENSG00000158270|ENST00000400256|COLEC12 REV__ENSG00000158270|ENST00000400256|COLEC12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.205322265625 3 360.182058 1077.52434 -0.48032 -0.000173 -1.1745 -0.00042305 -1.6549 -0.00059605 360.1816639167899 17.41 0.51756 16.099 15.921 16.439 -1.3109 33 14 3 0 0 0 0.87497 1 2807 2807 2.4985 0 1 994720 + 15853 17329 10341 10344 15960 15960 -0.01131714216603541 GALAPAHI 8 Unmodified _GALAPAHI_ 0 0 0 ENSG00000160199|ENST00000291547|PKNOX1;ENST00000607049.5_1_21:44448776-44450208:+|nuORF ENSG00000160199|ENST00000291547|PKNOX1 ENSG00000160199|ENST00000291547|PKNOX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2187194824219 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 55.217 1 52.333 51.833 52.833 -2.8837 0 0 0 0.23711 1 10562 10562 0.063987 0 1 15854 5235 10342 10345 15961 15961 0.03889878871370911 GALDFTLSR 9 Unmodified _GALDFTLSR_ 0 0 0 SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2646789550781 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 83.84 1 83.84 83.34 84.34 0 0 0 0 0.18489 1 16347 16347 17.113 12.397 1 15855 4742 10343 10346 15962 15962 0.02332883409144415 GALHPTPP 8 Unmodified _GALHPTPP_ 0 0 0 REV__ENST00000356613.3_2_8:143693066-143693568:-|nuORF REV__ENST00000356613.3_2_8:143693066-143693568:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 395.5342102050781 2 395.216321 788.418088 NaN NaN NaN NaN NaN NaN NaN 83.121 1 83.121 82.621 83.621 0 0 0 0 0.23664 1 16206 16206 3.2813 3.1584 1 + 15856 20814 10344 10347 15963 15963 0.015415750087527158 GALKSDLA 8 Unmodified _GALKSDLA_ 0 0 0 REV__nc|ENSG00000105855|P26012-2|ITGB8 REV__nc|ENSG00000105855|P26012-2|ITGB8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7199401855469 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 157.39 1 152.6 152.1 153.1 -4.7885 0 0 0 0.21486 1 31300 31300 8.5933 0 1 + 15857 15019 10345 10348 15964 15964 0.03254137943315527 GALSVVLI 8 Unmodified _GALSVVLI_ 0 0 0 ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant;MXRA5|p.S828Qfs*8|1|0.12|ENSG00000101825|chrX:3323204-3323204|G/-|frameshift_variant ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 386.5352478027344 2 386.252372 770.49019 -0.79126 -0.00030563 0.98988 0.00038234 0.19862 7.6718E-05 386.2527353690432 25.317 0.31299 23.463 23.292 23.605 -1.8534 11 8 2 0 0 0 0.89766 1 4177 4177 0.12286 0 1 384210 15858 2087 10346 10349 15965 15965 0.09576489362484608 GALVLRMF 8 Unmodified _GALVLRMF_ 0 0 0 REV__ENST00000367001.4_1_1:211749304-211749349:-|nuORF REV__ENST00000367001.4_1_1:211749304-211749349:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7640380859375 2 453.765123 905.515694 NaN NaN NaN NaN NaN NaN NaN 53.657 1 53.657 53.157 54.157 0 0 0 0 0.23749 1 10223 10223 0.12286 0 1 + 15859 20907 10347 10350 15966 15966 0.059156406132501616 GAMPCSFY 8 Unmodified _GAMPCSFY_ 0 0 0 REV__nc|nan|Q6ZRI6-2|C15orf39 REV__nc|nan|Q6ZRI6-2|C15orf39 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 438.21221923828125 2 438.174949 874.335346 NaN NaN NaN NaN NaN NaN NaN 106.66 1 106.66 106.16 107.16 0 0 0 0 0.21486 1 20970 20970 2.8892 0 1 + 15860 17907 10348 10351 15967 15967 -0.10684826105909906 GANLYKYS 8 Unmodified _GANLYKYS_ 0 0 0 REV__nc|ENSG00000115919|Q16719-2|KYNU REV__nc|ENSG00000115919|Q16719-2|KYNU MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2301940917969 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 42.759 1 40.04 39.54 40.54 -2.7191 0 0 0 0.22847 1 8005 8005 10.074 1.9184 1 + 15861 15456 10349 10352 15968 15968 -0.010864770279567892 GAPAPLPG 8 Unmodified _GAPAPLPG_ 0 0 0 REV__ENST00000527160.1_1_11:614111-614513:-|nuORF REV__ENST00000527160.1_1_11:614111-614513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.2058410644531 2 340.192314 678.370075 NaN NaN NaN NaN NaN NaN NaN 53.036 1 49.941 49.441 50.441 -3.0954 0 0 0 0.23294 1 9800 9800 0.25148 0 1 + 15862 22699 10350 10353 15969 15969 0.018025010887186 GAPARGYTG 9 Unmodified _GAPARGYTG_ 0 0 0 VWCE|p.H43Tfs*89|1|0.43|ENSG00000167992|chr11:61291560-61291560|G/-|frameshift_variant;nc|ENSG00000167992|Q96DN2-2|VWCE;VWCE|p.G829Efs*100|1|0.11|ENSG00000167992|chr11:61259057-61259058|-/ACCT|frameshift_variant;ENSG00000167992|ENST00000335613|VWCE VWCE|p.H43Tfs*89|1|0.43|ENSG00000167992|chr11:61291560-61291560|G/-|frameshift_variant VWCE|p.H43Tfs*89|1|0.43|ENSG00000167992|chr11:61291560-61291560|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25177001953125 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 62.366 1 59.405 58.905 59.905 -2.9614 0 0 0 0.23508 1 12033 12033 7.9102 0 1 15863 5865 10351 10354 15970 15970 -0.016205144849436692 GAPARKGHL 9 Unmodified _GAPARKGHL_ 0 0 0 ENST00000373991.3_1_20:34542651-34542879:-|nuORF ENST00000373991.3_1_20:34542651-34542879:-|nuORF ENST00000373991.3_1_20:34542651-34542879:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.76513671875 2 453.767043 905.519533 NaN NaN NaN NaN NaN NaN NaN 137.41 1 137.41 136.91 137.91 0 0 0 0 0.19684 1 27250 27250 0.37959 0.25672 1 15864 9211 10352 10355 15971 15971 0.06299446431319211 GAPARLPAPG 10 Unmodified _GAPARLPAPG_ 0 0 0 ENST00000429635.1_1_12:47473412-47473730:-|nuORF ENST00000429635.1_1_12:47473412-47473730:-|nuORF ENST00000429635.1_1_12:47473412-47473730:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76025390625 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 67.395 1 63.899 63.399 64.399 -3.4965 0 0 0 0.22588 1 12643 12643 11.64 0 1 15865 9764 10353 10356 15972 15972 0.051766243371730525 GAPATERGQAE 11 Unmodified _GAPATERGQAE_ 0 0 0 ENST00000552092.1_1_12:117317079-117317421:-|nuORF ENST00000552092.1_1_12:117317079-117317421:-|nuORF ENST00000552092.1_1_12:117317079-117317421:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7722778320312 2 543.762352 1085.51015 0.40251 0.00021887 -1.9437 -0.0010569 -1.5412 -0.00083805 543.7611730196251 122 0.46167 117.47 117.3 117.76 -4.5305 20 12 2 0 0 0 0.87468 1 23543 23543 20.415 12.504 1 1585000 15866 11190 10354 10357 15973 15973 -0.029184114355075508 GAPEARARVPQ 11 Unmodified _GAPEARARVPQ_ 0 0 0 ENSG00000173442|ENST00000309295|EHBP1L1 ENSG00000173442|ENST00000309295|EHBP1L1 ENSG00000173442|ENST00000309295|EHBP1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3157348632812 2 576.317628 1150.6207 NaN NaN NaN NaN NaN NaN NaN 170.13 1 165.25 164.75 165.75 -4.873 0 0 0 0.22683 1 33648 33648 10.8 0.72558 1 15867 6293 10355 10358 15974 15974 0.05141853343366165 GAPFKKMM 8 Unmodified _GAPFKKMM_ 0 0 0 REV__tr|U7SUA1|U7SUA1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01355PE=4SV=1 REV__tr|U7SUA1|U7SUA1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01355PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.039794921875 3 303.827682 908.461215 -0.29437 -8.9436E-05 -0.93292 -0.00028345 -1.2273 -0.00037288 303.82733405265714 28.859 0.41695 26.863 26.728 27.145 -1.9962 18 11 2 0 0 0 1.0276 1 4867 4867 0.45834 0 1 513960 + 15868 25154 10356 10359 15975 15975 0.0033230547018092693 GAPHGGHS 8 Unmodified _GAPHGGHS_ 0 0 0 ENST00000369774.8_3_10:105360489-105360906:-|nuORF ENST00000369774.8_3_10:105360489-105360906:-|nuORF ENST00000369774.8_3_10:105360489-105360906:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2049255371094 2 360.164619 718.314686 NaN NaN NaN NaN NaN NaN NaN 50.688 1 47.805 47.305 48.305 -2.8824 0 0 0 0.23366 1 9618 9618 0.68139 0.6174 1 15869 9128 10357 10360 15976 15976 -0.05573912379054491 GAPLAKRSKWF 11 Unmodified _GAPLAKRSKWF_ 0 0 0 ENSG00000106344|ENST00000223073|RBM28;nc|ENSG00000106344|Q9NW13-2|RBM28 ENSG00000106344|ENST00000223073|RBM28 ENSG00000106344|ENST00000223073|RBM28 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7537231445312 2 630.864215 1259.71388 NaN NaN NaN NaN NaN NaN NaN 73.914 1 70.237 69.737 70.737 -3.6764 0 0 0 0.23324 1 13977 13977 5.7319 1.7875 1 15870 2378 10358 10361 15977 15977 0.09440777796589828 GAPLLAHA 8 Unmodified _GAPLLAHA_ 0 0 0 REV__nc|ENSG00000284922|Q8WZ04-2|TOMT REV__nc|ENSG00000284922|Q8WZ04-2|TOMT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2178039550781 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 51.896 1 48.844 48.344 49.344 -3.0517 0 0 0 0.2396 1 9569 9569 0.30703 0 1 + 15871 24319 10359 10362 15978 15978 0.03889878871370911 GAPLQAFHRR 10 Unmodified _GAPLQAFHRR_ 0 0 0 ENST00000590444.5_1_19:6471408-6475578:-|nuORF;DENND1C|p.G479Afs*3|2|0.28|ENSG00000205744|chr19:6468925-6468925|C/-|frameshift_variant;DENND1C|p.S553Lfs*8|1|0.17|ENSG00000205744|chr19:6468369-6468369|C/-|frameshift_variant;nc|ENSG00000205744|Q8IV53-2|DENND1C;ENSG00000205744|ENST00000381480|DENND1C ENST00000590444.5_1_19:6471408-6475578:-|nuORF ENST00000590444.5_1_19:6471408-6475578:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.31103515625 2 576.822881 1151.63121 0.15812 9.1205E-05 0.54752 0.00031582 0.70563 0.00040702 577.3246147894345 132.07 0.17032 127.22 127.08 127.25 -4.8527 6 4 2 0 0 0 0.89521 1 25360 25360 6.7232 0 1 1335100 15872 814 10360 10363 15979 15979 0.06145880788449176 GAPLRDRWAVC 11 Unmodified _GAPLRDRWAVC_ 0 0 0 REV__ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;REV__ENSG00000064687|ENST00000263094|ABCA7 REV__ENSG00000064687|ENST00000263094|ABCA7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7547607421875 2 622.321857 1242.62916 NaN NaN NaN NaN NaN NaN NaN 60.186 1 56.872 56.372 57.372 -3.3139 0 0 0 0.23324 1 11205 11205 5.7319 2.1354 1 + 15873 12892;14172 10361 10364 15980 15980 0.017550839883369918 GAPLRLAELVQ 11 Unmodified _GAPLRLAELVQ_ 0 0 0 REV__ENSG00000133030|ENST00000651222|MPRIP REV__ENSG00000133030|ENST00000651222|MPRIP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 583.8472900390625 2 583.84823 1165.68191 NaN NaN NaN NaN NaN NaN NaN 167.71 1 167.71 167.21 168.21 0 0 0 0 0.22632 1 34291 34291 1.4074 0 1 + 15874 16150 10362 10365 15981 15981 0.10569365322771773 GAPNPDRF 8 Unmodified _GAPNPDRF_ 0 0 0 SEC16A|p.L1037P|1|0.32|ENSG00000148396|chr9:136474506-136474506|A/G|missense_variant SEC16A|p.L1037P|1|0.32|ENSG00000148396|chr9:136474506-136474506|A/G|missense_variant SEC16A|p.L1037P|1|0.32|ENSG00000148396|chr9:136474506-136474506|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2160339355469 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 170.83 1 170.83 170.33 171.33 0 0 0 0 0.21486 1 35151 35151 7.9102 1.5561 1 15875 25649 10363 10366 15982 15982 -0.027245144849530334 GAPNPDRF 8 Unmodified _GAPNPDRF_ 0 0 0 SEC16A|p.L1037P|1|0.32|ENSG00000148396|chr9:136474506-136474506|A/G|missense_variant SEC16A|p.L1037P|1|0.32|ENSG00000148396|chr9:136474506-136474506|A/G|missense_variant SEC16A|p.L1037P|1|0.32|ENSG00000148396|chr9:136474506-136474506|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21551513671875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 148.52 1 143.36 142.86 143.86 -5.1557 0 0 0 0.21486 1 28754 28754 12.532 3.1841 1 15876 25649 10363 10366 15983 15983 -0.027245144849530334 GAPPPGSH 8 Unmodified _GAPPPGSH_ 0 0 0 SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|19|2|sense;SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|19|2|sense SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|19|2|sense SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|19|2|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2120361328125 2 360.177195 718.339838 NaN NaN NaN NaN NaN NaN NaN 50.349 1 47.468 46.968 47.968 -2.8811 0 0 0 0.22676 1 9554 9554 3.5871 1.8448 1 15877 25800 10364 10367 15984 15984 -0.030598575764884117 GAPRFPVLKPY 11 Unmodified _GAPRFPVLKPY_ 0 0 0 REV__ENSG00000127249|ENST00000342695|ATP13A4 REV__ENSG00000127249|ENST00000342695|ATP13A4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7645263671875 2 622.861141 1243.70773 NaN NaN NaN NaN NaN NaN NaN 62.015 1 59.053 58.553 59.553 -2.9614 0 0 0 0.23264 1 11959 11959 6.2058 1.8765 1 + 15878 15881 10365 10368 15985 15985 0.09562259565109343 GAPRGIPLGDL 11 Unmodified _GAPRGIPLGDL_ 0 0 0 REV__ENST00000311852.10_1_14:23315010-23315046:+|nuORF REV__ENST00000311852.10_1_14:23315010-23315046:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2645263671875 2 533.306198 1064.59784 NaN NaN NaN NaN NaN NaN NaN 69.141 1 65.605 65.105 66.105 -3.5362 0 0 0 0.22862 1 13014 13014 9.3831 0.78985 1 + 15879 20494 10366 10369 15986 15986 0.06812834225888764 GAPRRGVLYY 10 Unmodified _GAPRRGVLYY_ 0 0 0 REV__KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant REV__KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3325805664062 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 69.35 1 65.96 65.46 66.46 -3.3903 0 0 0 0.22588 1 13113 13113 7.9102 0.62092 1 + 15880 16274 10367 10370 15987 15987 0.055439428370846144 GAQAPGPLPAT 11 Unmodified _GAQAPGPLPAT_ 0 0 0 REV__nc|ENSG00000205923|Q6PRD7|CEMP1 REV__nc|ENSG00000205923|Q6PRD7|CEMP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2668762207031 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 41.213 1 41.213 40.713 41.713 0 0 0 0 0.22632 1 7686 7686 1.4074 0 1 + 15881 24244 10368 10371 15988 15988 0.023328834091330464 GARGGSGK 8 Unmodified _GARGGSGK_ 0 0 0 REV__ENST00000355957.9_1_20:57226406-57226688:+|nuORF REV__ENST00000355957.9_1_20:57226406-57226688:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.1537170410156 2 345.188094 688.361636 NaN NaN NaN NaN NaN NaN NaN 116.54 1 116.54 116.04 117.04 0 0 0 0 0.2396 1 22949 22949 0.0082765 0 1 + 15882 20803 10369 10372 15989 15989 0.004989471721046357 GARKGLPDD 9 Unmodified _GARKGLPDD_ 0 0 0 REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16534423828125 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 155.12 1 149.83 149.33 150.33 -5.2854 0 0 0 0.23508 1 30084 30084 0.26902 0.26902 1 + 15883 22701 10370 10373 15990 15990 0.010754262322734576 GARKQKAFLV 10 Unmodified _GARKQKAFLV_ 0 0 0 ENST00000428534.1_1_7:42262869-42277405:-|nuORF ENST00000428534.1_1_7:42262869-42277405:-|nuORF ENST00000428534.1_1_7:42262869-42277405:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.1349182128906 3 373.232864 1116.67676 0.0031276 1.1673E-06 1.2381 0.00046209 1.2412 0.00046326 373.2329929590276 47.205 0.47743 44.262 44 44.478 -2.9421 26 13 3 0 0 0 0.91149 1 8634 8634 0.77653 0.61721 1 1727200 15884 9754 10371 10374 15991 15991 0.12309106250836521 GARKQKAFLV 10 Unmodified _GARKQKAFLV_ 0 0 0 ENST00000428534.1_1_7:42262869-42277405:-|nuORF ENST00000428534.1_1_7:42262869-42277405:-|nuORF ENST00000428534.1_1_7:42262869-42277405:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 373.232864 1116.67676 -0.28649 -0.00010693 1.0351 0.00038632 0.74857 0.00027939 373.23319676168774 47.163 0.54946 44.3 43.917 44.467 -2.8634 0.024217 -0.00026227 NaN 0.77653 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1210300 15885 9754 10371 10374 0.12309106250836521 GARKQKAFLV 10 Unmodified _GARKQKAFLV_ 0 0 0 ENST00000428534.1_1_7:42262869-42277405:-|nuORF ENST00000428534.1_1_7:42262869-42277405:-|nuORF ENST00000428534.1_1_7:42262869-42277405:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 373.232864 1116.67676 -0.77931 -0.00029087 1.9277 0.00071948 1.1484 0.00042862 373.2332828578342 47.215 0.45103 44.265 43.948 44.399 -2.9499 -0.010782 0.00073723 NaN 0.77653 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 827360 15886 9754 10371 10374 0.12309106250836521 GARLFKCAGY 10 Unmodified _GARLFKCAGY_ 0 0 0 REV__PARP12|p.K455Rfs*14|1|0.3|ENSG00000059378|chr7:140034292-140034292|T/-|frameshift_variant REV__PARP12|p.K455Rfs*14|1|0.3|ENSG00000059378|chr7:140034292-140034292|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7801513671875 2 543.281669 1084.54878 0.14457 7.854E-05 -1.495 -0.00081221 -1.3504 -0.00073367 543.7822624017472 97.967 1.0674 94.048 93.398 94.466 -3.9194 54 30 2 0 0 0 0.46704 1 18700 18700 0.84494 0.84494 1 2086000 + 15887 14135 10372 10375 15992 15992 0.009892226652937097 GARPGRVH 8 Unmodified _GARPGRVH_ 0 0 0 ENST00000260447.5_1_15:41056290-41058050:+|nuORF ENST00000260447.5_1_15:41056290-41058050:+|nuORF ENST00000260447.5_1_15:41056290-41058050:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2433166503906 2 425.243735 848.472918 0.16381 6.9659E-05 -1.7708 -0.00075301 -1.607 -0.00068335 425.2430044486347 25.943 0.38199 25.943 25.774 26.156 0 16 10 2 0 0 0 8448 1 4554 4554 6.2058 0 1 1094000 15888 8282 10373 10376 15993 15993 0.042620066000381485 GARPGRVH 8 Unmodified _GARPGRVH_ 0 0 0 ENST00000260447.5_1_15:41056290-41058050:+|nuORF ENST00000260447.5_1_15:41056290-41058050:+|nuORF ENST00000260447.5_1_15:41056290-41058050:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2514953613281 2 425.243735 848.472918 0.69818 0.00029689 -1.5674 -0.00066651 -0.86918 -0.00036961 425.2429884978199 27.944 0.45685 25.988 25.803 26.26 -1.9561 21 12 2 0 0 0 8448 1 5001 5001 3.2813 0 1 1798500 15889 8282 10373 10376 15994 15994 0.042620066000381485 GARQGGGF 8 Unmodified _GARQGGGF_ 0 0 0 REV__ENST00000304222.2_1_17:15848237-15848780:+|nuORF REV__ENST00000304222.2_1_17:15848237-15848780:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2127990722656 2 375.188094 748.361636 NaN NaN NaN NaN NaN NaN NaN 59.456 1 56.142 55.642 56.642 -3.3139 0 0 0 0.23711 1 11056 11056 0.12286 0 1 + 15890 20424 10374 10377 15995 15995 -0.022610528278960373 GARVCQAG 8 Unmodified _GARVCQAG_ 0 0 0 ENST00000308375.10_1_3:49761264-49761339:-|nuORF ENST00000308375.10_1_3:49761264-49761339:-|nuORF ENST00000308375.10_1_3:49761264-49761339:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2093811035156 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 100.05 1 95.757 95.257 96.257 -4.297 0 0 0 0.23899 1 19131 19131 1.3295 1.2067 1 15891 8625 10375 10378 15996 15996 -0.024761260455534284 GARVYSSHSM 10 Unmodified _GARVYSSHSM_ 0 0 0 nc|ENSG00000167566|Q9HCH0-2|NCKAP5L;ENSG00000167566|ENST00000335999|NCKAP5L;NCKAP5L|p.P949Rfs*23|1|0.14|ENSG00000167566|chr12:49795014-49795014|G/-|frameshift_variant nc|ENSG00000167566|Q9HCH0-2|NCKAP5L nc|ENSG00000167566|Q9HCH0-2|NCKAP5L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.786376953125 2 547.756015 1093.49748 -0.018769 -1.0281E-05 -0.82717 -0.00045309 -0.84594 -0.00046337 547.7554693827483 46.936 0.58951 44.019 43.739 44.328 -2.9163 22 16 2 0 0 0 0.68961 1 8532 8532 12.241 1.4167 1 1530000 15892 5819 10376 10379 15997 15997 -0.045531460994197914 GASAVLPT 8 Unmodified _GASAVLPT_ 0 0 0 REV__ZHX3|p.L445Sfs*3|1|0.19|ENSG00000174306|chr20:41203584-41203584|G/-|frameshift_variant REV__ZHX3|p.L445Sfs*3|1|0.19|ENSG00000174306|chr20:41203584-41203584|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 358.2066345214844 2 358.202879 714.391205 NaN NaN NaN NaN NaN NaN NaN 44.634 1 41.844 41.344 42.344 -2.79 0 0 0 0.21486 1 8391 8391 5.2307 0 1 + 15893 18405 10377 10380 15998 15998 0.02258466397563552 GASLEPRSL 9 Unmodified _GASLEPRSL_ 0 0 0 nc|ENSG00000183914|Q9P225-3|DNAH2 nc|ENSG00000183914|Q9P225-3|DNAH2 nc|ENSG00000183914|Q9P225-3|DNAH2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25689697265625 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 68.026 1 64.699 64.199 65.199 -3.3268 0 0 0 0.21844 1 12836 12836 18.146 2.2992 1 15894 12507 10378 10381 15999 15999 0.03068596892092046 GASPERTAAP 10 Unmodified _GASPERTAAP_ 0 0 0 ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENST00000326317.10_1_17:78190987-78194107:-|nuORF ENST00000570923.1_1_17:78185753-78194107:-|nuORF ENST00000570923.1_1_17:78185753-78194107:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7433776855469 2 478.743431 955.472308 -0.23031 -0.00011026 0.0089103 4.2658E-06 -0.2214 -0.00010599 478.74353695854876 24.789 0.57674 22.936 22.539 23.116 -1.8534 24 16 2 0 0 0 0.59928 1 4077 4077 19.257 1.1106 1 400250 15895 11418 10379 10382 16000 16000 -0.007208776303286868 GASSQMCTPPG 11 Unmodified _GASSQMCTPPG_ 0 0 0 ENST00000359114.8_1_22:38087588-38087750:+|nuORF ENST00000359114.8_1_22:38087588-38087750:+|nuORF ENST00000359114.8_1_22:38087588-38087750:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.48681640625 3 345.812648 1034.41612 -0.044282 -1.5313E-05 0.5906 0.00020424 0.54632 0.00018893 346.14792957474145 43.144 0.86187 40.482 40.249 41.111 -2.6629 82 23 5 0 0 0 0.48131 1 7785 7785 0.2986 0 1 4905000 15896 8996 10380 10383 16001 16001 -0.0997158985369424 GASTSAKK 8 Unmodified _GASTSAKK_ 0 0 0 REV__ENSG00000273841|ENST00000217893|TAF9 REV__ENSG00000273841|ENST00000217893|TAF9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2113342285156 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 22.538 1 21.041 20.541 21.541 -1.4967 0 0 0 0.23749 1 3855 3855 0.063987 0 1 + 15897 19924 10381 10384 16002 16002 0.023649672835176716 GASVIIKL 8 Unmodified _GASVIIKL_ 0 0 0 REV__ENST00000550423.5_1_12:120637928-120638589:-|nuORF REV__ENST00000550423.5_1_12:120637928-120638589:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 401.2096252441406 2 400.765646 799.516739 NaN NaN NaN NaN NaN NaN NaN 21.493 1 21.493 20.993 21.993 0 0 0 0 0.23782 1 3600 3600 0.12286 0 1 + 15898 22916 10382 10385 16003 16003 0.10896178253790367 GASYLNVEDL 10 Unmodified _GASYLNVEDL_ 0 0 0 REV__NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant REV__NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2662353515625 2 540.764029 1079.5135 0.32191 0.00017408 2.6722 0.001445 2.9941 0.0016191 541.2674500457314 30.502 0.10276 30.502 30.417 30.519 0 4 2 2 0 0 0 0.51405 1 5483 5483 3.8763 0.59502 1 432430 + 15899 19275 10383 10386 16004 16004 -0.023071613815318415 GASYLNVEDL 10 Unmodified _GASYLNVEDL_ 0 0 0 REV__NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant REV__NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.764029 1079.5135 0.32191 0.00017408 2.6722 0.001445 2.9941 0.0016191 541.2674500457314 30.502 0.10276 30.502 30.417 30.519 0 -0.091709 -0.00042061 NaN 3.8763 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 432430 + 15900 19275 10383 10386 -0.023071613815318415 GASYLNVEDL 10 Unmodified _GASYLNVEDL_ 0 0 0 REV__NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant REV__NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.764029 1079.5135 0.32892 0.00017787 3.7346 0.0020196 4.0636 0.0021974 540.766521024433 32.832 0.16995 30.685 30.589 30.759 -2.1468 0.091709 0.00072842 NaN 3.8763 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 231510 + 15901 19275 10383 10386 -0.023071613815318415 GATDYCSLS 9 Unmodified _GATDYCSLS_ 0 0 0 nc|ENSG00000085832|P42566-2|EPS15;EPS15|p.R789Dfs*14|1|0.37|ENSG00000085832|chr1:51361350-51361350|T/-|frameshift_variant;ENSG00000085832|ENST00000371733|EPS15 nc|ENSG00000085832|P42566-2|EPS15 nc|ENSG00000085832|P42566-2|EPS15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.1782531738281 3 306.128742 915.364398 -0.24508 -7.5025E-05 0.96233 0.0002946 0.71725 0.00021957 306.12900476457514 99.357 0.55805 99.357 99.024 99.582 0 25 15 2 0 0 0 0.58066 1 19492 19492 0.40827 0 1 898170 15902 1683 10384 10387 16005 16005 -0.09667010275916255 GATDYCSLS 9 Unmodified _GATDYCSLS_ 0 0 0 nc|ENSG00000085832|P42566-2|EPS15;EPS15|p.R789Dfs*14|1|0.37|ENSG00000085832|chr1:51361350-51361350|T/-|frameshift_variant;ENSG00000085832|ENST00000371733|EPS15 nc|ENSG00000085832|P42566-2|EPS15 nc|ENSG00000085832|P42566-2|EPS15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 306.128742 915.364398 -0.065494 -2.0049E-05 0.84664 0.00025918 0.78115 0.00023913 306.12897650915954 103.35 0.42061 99.299 99.138 99.558 -4.0543 -0.053701 1.3144E-05 NaN 0.40827 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 975330 15903 1683 10384 10387 -0.09667010275916255 GATGDGGP 8 Unmodified _GATGDGGP_ 0 0 0 REV__ENSG00000131264|ENST00000373514|CDX4 REV__ENSG00000131264|ENST00000373514|CDX4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7501831054688 1 631.268195 630.260919 0.87239 0.00055071 -0.78682 -0.0004967 0.085563 5.4013E-05 631.2685306221731 74.725 0.4986 71.36 71.057 71.555 -3.3643 15 13 2 0 0 0 1.0095 1 14542 14542 0 0 1 1745400 + 15904 16064 10385 10388 16006 16006 -0.06900129601433491 GATGTEPS 8 Unmodified _GATGTEPS_ 0 0 0 REV__ENSG00000038219|ENST00000040738|BOD1L1 REV__ENSG00000038219|ENST00000040738|BOD1L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2137756347656 2 360.163951 718.313348 NaN NaN NaN NaN NaN NaN NaN 137.97 1 133.05 132.55 133.55 -4.9216 0 0 0 0.23366 1 26528 26528 0.063987 0 1 + 15905 14038 10386 10389 16007 16007 -0.05707591258465072 GATRQLRRAK 10 Unmodified _GATRQLRRAK_ 0 0 0 REV__ENSG00000146909|ENST00000275820|NOM1 REV__ENSG00000146909|ENST00000275820|NOM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 386.1984558105469 3 386.2389 1155.69487 NaN NaN NaN NaN NaN NaN NaN 41.037 1 38.403 37.903 38.903 -2.6348 0 0 0 2.8426 1 7658 7658 0.013265 0.012701 1 + 15906 16910 10387 10390 16008 16008 0.12325241225562422 GATSGKAK 8 Unmodified _GATSGKAK_ 0 0 0 REV__nc|ENSG00000074855|Q9HCE9-2|ANO8 REV__nc|ENSG00000074855|Q9HCE9-2|ANO8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2057189941406 2 360.205953 718.397353 NaN NaN NaN NaN NaN NaN NaN 51.841 1 48.959 48.459 49.459 -2.8824 0 0 0 0.23025 1 9855 9855 0.25148 0.12861 1 + 15907 14321 10388 10391 16009 16009 0.026889846290828245 GAVCSCCFGTA 11 Unmodified _GAVCSCCFGTA_ 0 0 0 REV__ENSG00000116962|ENST00000264187|NID1 REV__ENSG00000116962|ENST00000264187|NID1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.1258544921875 3 340.131212 1017.37181 -0.26676 -9.0733E-05 1.8333 0.00062356 1.5665 0.00053282 340.4664651968987 51.494 2.123 51.494 50.987 53.11 0 209 59 6 0 0 0 0.46893 1 9774 9774 2.1236 1.2787 1 62285000 + 15908 15508 10389 10392 16010 16010 -0.1361831727150502 GAVGHVPD 8 Unmodified _GAVGHVPD_ 0 0 0 ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;ZFYVE26|p.D2513Mfs*3|1|0.29|ENSG00000072121|chr14:67748519-67748519|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ZFYVE26|p.P1734Lfs*10|1|0.08|ENSG00000072121|chr14:67775880-67775880|G/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF;ENST00000557366.5_1_14:68270819-68282710:-|nuORF;ZFYVE26|p.E706*|1|0.45|ENSG00000072121|chr14:67798147-67798148|-/G|frameshift_variant ENST00000554523.5_1_14:68228796-68282710:-|nuORF ENST00000554523.5_1_14:68228796-68282710:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1173095703125 2 376.190303 750.366053 NaN NaN NaN NaN NaN NaN NaN 52.147 1 49.059 48.559 49.559 -3.0876 0 0 0 0.21486 1 9588 9588 5.2307 0 1 15909 1458 10390 10393 16011 16011 -0.019115884050052045 GAVHQQLY 8 Unmodified _GAVHQQLY_ 0 0 0 REV__nc|ENSG00000196428|O75157|TSC22D2 REV__nc|ENSG00000196428|O75157|TSC22D2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23956298828125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 70.691 1 70.691 70.191 71.191 0 0 0 0 0.21486 1 13692 13692 9.3474 0 1 + 15910 24223 10391 10394 16012 16012 0.0003634506618936939 GAVVIIVRAPR 11 Unmodified _GAVVIIVRAPR_ 0 0 0 ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;SLC3A2|p.K300Rfs*31|10|0.23|ENSG00000168003|chr11:62882057-62882057|A/-|frameshift_variant ENSG00000168003|ENST00000338663|SLC3A2 ENSG00000168003|ENST00000338663|SLC3A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3353271484375 2 575.874582 1149.73461 0.14306 8.2385E-05 1.3716 0.00078984 1.5146 0.00087223 575.8760536594297 155.57 0.20476 150.79 150.66 150.87 -4.7791 6 5 2 0 0 0 0.96156 1 30931 30931 1.4819 1.1749 1 1132600 15911 5866 10392 10395 16013 16013 0.16573368176273107 GAWLFAFS 8 Unmodified _GAWLFAFS_ 0 0 0 REV__ENSG00000153187|ENST00000640218|HNRNPU REV__ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 450.2272033691406 2 449.726521 897.438489 -0.072657 -3.2676E-05 -0.84053 -0.00037801 -0.91319 -0.00041069 449.7262927121796 59.452 0.64285 59.452 59.141 59.784 0 25 17 2 0 0 0 8448 1 11353 11353 10.074 3.8681 1 721620 + 15912 17139 10393 10396 16014 16014 -0.014332543314367285 GCCCCCCA 8 Unmodified _GCCCCCCA_ 0 0 0 ENST00000562592.5_1_16:57770947-57775680:+|nuORF ENST00000562592.5_1_16:57770947-57775680:+|nuORF ENST00000562592.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 383.0487060546875 2 383.069401 764.124249 NaN NaN NaN NaN NaN NaN NaN 179.52 1 174.65 174.15 175.15 -4.868 0 0 0 0.21486 1 35766 35766 0 0 1 15913 11318 10394 10397 16015 16015 -0.26724809006975647 GCCCGCFE 8 Unmodified _GCCCGCFE_ 0 0 0 ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-2|FAM221B ENSG00000204930|ENST00000423537|FAM221B ENSG00000204930|ENST00000423537|FAM221B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.1073303222656 2 411.107895 820.201237 NaN NaN NaN NaN NaN NaN NaN 119.39 1 119.39 118.89 119.89 0 0 0 0 0.21486 1 23523 23523 0 0 1 15914 7621 10395 10398 16016 16016 -0.2160555119462515 GCCCGCFE 8 Unmodified _GCCCGCFE_ 0 0 0 ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-2|FAM221B ENSG00000204930|ENST00000423537|FAM221B ENSG00000204930|ENST00000423537|FAM221B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.12628173828125 2 411.107895 820.201237 NaN NaN NaN NaN NaN NaN NaN 12.985 1 11.975 11.475 12.475 -1.0098 0 0 0 0.21486 1 1850 1850 0 0 1 15915 7621 10395 10398 16017 16017 -0.2160555119462515 GCCCGCFE 8 Unmodified _GCCCGCFE_ 0 0 0 ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-2|FAM221B ENSG00000204930|ENST00000423537|FAM221B ENSG00000204930|ENST00000423537|FAM221B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.113037109375 2 411.107895 820.201237 NaN NaN NaN NaN NaN NaN NaN 21.117 1 19.643 19.143 20.143 -1.4742 0 0 0 0.21486 1 3558 3558 0 0 1 15916 7621 10395 10398 16018 16018 -0.2160555119462515 GCCCGCFE 8 Unmodified _GCCCGCFE_ 0 0 0 ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-2|FAM221B ENSG00000204930|ENST00000423537|FAM221B ENSG00000204930|ENST00000423537|FAM221B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.1267395019531 2 411.107895 820.201237 NaN NaN NaN NaN NaN NaN NaN 15.156 1 13.934 13.434 14.434 -1.2219 0 0 0 0.21486 1 2102 2102 0 0 1 15917 7621 10395 10398 16019 16019 -0.2160555119462515 GCCCGCFE 8 Unmodified _GCCCGCFE_ 0 0 0 ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-2|FAM221B ENSG00000204930|ENST00000423537|FAM221B ENSG00000204930|ENST00000423537|FAM221B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.10662841796875 2 411.107895 820.201237 NaN NaN NaN NaN NaN NaN NaN 56.151 1 52.962 52.462 53.462 -3.1895 0 0 0 0.21486 1 10399 10399 0 0 1 15918 7621 10395 10398 16020 16020 -0.2160555119462515 GCCCGCFE 8 Unmodified _GCCCGCFE_ 0 0 0 ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-2|FAM221B ENSG00000204930|ENST00000423537|FAM221B ENSG00000204930|ENST00000423537|FAM221B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.115234375 2 411.107895 820.201237 NaN NaN NaN NaN NaN NaN NaN 12.358 1 11.237 10.737 11.737 -1.1206 0 0 0 0.21486 1 1464 1464 0 0 1 15919 7621 10395 10398 16021 16021 -0.2160555119462515 GCCFCCCCCF 10 Unmodified _GCCFCCCCCF_ 0 0 0 REV__ENSG00000163793|ENST00000296097|DNAJC5G REV__ENSG00000163793|ENST00000296097|DNAJC5G MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 546.00048828125 2 546.12385 1090.23315 NaN NaN NaN NaN NaN NaN NaN 174.52 1 169.73 169.23 170.23 -4.7898 0 0 0 0.22588 1 35656 35656 0 0 1 + 15920 17613 10396 10399 16022 16022 -0.3083596609901633 GCCGDSGC 8 Unmodified _GCCGDSGC_ 0 0 0 ENSG00000169509|ENST00000368790|CRCT1 ENSG00000169509|ENST00000368790|CRCT1 ENSG00000169509|ENST00000368790|CRCT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.08929443359375 2 351.088017 700.161481 NaN NaN NaN NaN NaN NaN NaN 6.7551 1 5.7105 5.2105 6.2105 -1.0446 0 0 0 0.21486 1 504 504 0 0 1 15921 5985 10397 10400 16023 16023 -0.20059354873683333 GCCSSGCCSS 10 Unmodified _GCCSSGCCSS_ 0 0 0 REV__ENSG00000186860|ENST00000334202|KRTAP17-1 REV__ENSG00000186860|ENST00000334202|KRTAP17-1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 447.1171569824219 2 447.116448 892.218344 NaN NaN NaN NaN NaN NaN NaN 168.68 1 168.68 168.18 169.18 0 0 0 0 0.22588 1 34569 34569 0 0 1 + 15922 19059 10398 10401 16024 16024 -0.23207675379467219 GCCSSGCCSS 10 Unmodified _GCCSSGCCSS_ 0 0 0 REV__ENSG00000186860|ENST00000334202|KRTAP17-1 REV__ENSG00000186860|ENST00000334202|KRTAP17-1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 447.11669921875 2 447.116448 892.218344 NaN NaN NaN NaN NaN NaN NaN 165.29 1 160.5 160 161 -4.7898 0 0 0 0.22588 1 33094 33094 0 0 1 + 15923 19059 10398 10401 16025 16025 -0.23207675379467219 GCDHGPSC 8 Unmodified _GCDHGPSC_ 0 0 0 REV__CCPG1|p.R619G|1|0.1|ENSG00000260916|chr15:55359918-55359918|T/C|missense_variant REV__CCPG1|p.R619G|1|0.1|ENSG00000260916|chr15:55359918-55359918|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 388.2070617675781 2 388.128531 774.242508 NaN NaN NaN NaN NaN NaN NaN 25.703 1 24.069 23.569 24.569 -1.6347 0 0 0 0.21486 1 4235 4235 0.69038 0 1 + 15924 13312 10399 10402 16026 16026 -0.15364330839281592 GCDMHDSS 8 Unmodified _GCDMHDSS_ 0 0 0 REV__MPRIP|p.R254H|1|0.24|ENSG00000133030|chr17:17137940-17137940|G/A|missense_variant REV__MPRIP|p.R254H|1|0.24|ENSG00000133030|chr17:17137940-17137940|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 426.29058837890625 2 426.136553 850.258552 NaN NaN NaN NaN NaN NaN NaN 153.78 1 148.56 148.06 149.06 -5.2209 0 0 0 0.21486 1 29808 29808 0.69038 0.69038 1 + 15925 23876 10400 10403 16027 16027 -0.17256669393043467 GCDVYQYREQ 10 Unmodified _GCDVYQYREQ_ 0 0 0 REV__ENSG00000106460|ENST00000396668|TMEM106B REV__ENSG00000106460|ENST00000396668|TMEM106B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76953125 2 630.769319 1259.52409 NaN NaN NaN NaN NaN NaN NaN 70.586 1 67.337 66.837 67.837 -3.2492 0 0 0 2.8426 1 13737 13737 3.8763 0 1 + 15926 15052 10401 10404 16028 16028 -0.09529501998736123 GCEECCCCCC 10 Unmodified _GCEECCCCCC_ 0 0 0 REV__ENSG00000170075|ENST00000367282|GPR37L1 REV__ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 528.0989379882812 2 528.098029 1054.18151 NaN NaN NaN NaN NaN NaN NaN 165.97 1 161.18 160.68 161.68 -4.7898 0 0 0 2.8426 1 33285 33285 0 0 1 + 15927 18139 10402 10405 16029 16029 -0.34341754583556394 GCIRPHFV 8 Unmodified _GCIRPHFV_ 0 0 0 REV__ENSG00000170871|ENST00000307659|KIAA0232 REV__ENSG00000170871|ENST00000307659|KIAA0232 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16510009765625 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 100.04 1 100.04 99.538 100.54 0 0 0 0 0.21486 1 19623 19623 1.8442 1.4435 1 + 15928 18184 10403 10406 16030 16030 0.008252992936263581 GCIRPHFV 8 Unmodified _GCIRPHFV_ 0 0 0 REV__ENSG00000170871|ENST00000307659|KIAA0232 REV__ENSG00000170871|ENST00000307659|KIAA0232 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16510009765625 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 110.71 1 110.71 110.21 111.21 0 0 0 0 0.21486 1 21774 21774 1.8442 0.19162 1 + 15929 18184 10403 10406 16031 16031 0.008252992936263581 GCIRPHFV 8 Unmodified _GCIRPHFV_ 0 0 0 REV__ENSG00000170871|ENST00000307659|KIAA0232 REV__ENSG00000170871|ENST00000307659|KIAA0232 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650695800781 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 111.45 1 111.45 110.95 111.95 0 0 0 0 0.21486 1 21921 21921 1.8442 0.88196 1 + 15930 18184 10403 10406 16032 16032 0.008252992936263581 GCIRPHFV 8 Unmodified _GCIRPHFV_ 0 0 0 REV__ENSG00000170871|ENST00000307659|KIAA0232 REV__ENSG00000170871|ENST00000307659|KIAA0232 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1651916503906 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 102.09 1 97.77 97.27 98.27 -4.3208 0 0 0 0.21486 1 19544 19544 1.8442 0.19162 1 + 15931 18184 10403 10406 16033 16033 0.008252992936263581 GCIRPHFV 8 Unmodified _GCIRPHFV_ 0 0 0 REV__ENSG00000170871|ENST00000307659|KIAA0232 REV__ENSG00000170871|ENST00000307659|KIAA0232 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 115.05 1 110.49 109.99 110.99 -4.555 0 0 0 0.23837 1 22089 22089 0.13829 0 1 + 15932 18184 10403 10406 16034 16034 0.008252992936263581 GCLDAYHR 8 Unmodified _GCLDAYHR_ 0 0 0 TFAP2D|p.R141H|1|0.24|ENSG00000008197|chr6:50715498-50715498|G/A|missense_variant TFAP2D|p.R141H|1|0.24|ENSG00000008197|chr6:50715498-50715498|G/A|missense_variant TFAP2D|p.R141H|1|0.24|ENSG00000008197|chr6:50715498-50715498|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.1336975097656 3 312.144838 933.412685 NaN NaN NaN NaN NaN NaN NaN 88.76 1 88.76 88.26 89.26 0 0 0 0 0.21486 1 17327 17327 1.6526 0.17072 1 15933 25838 10404 10407 16035 16035 -0.05668471845365275 GCLDAYHR 8 Unmodified _GCLDAYHR_ 0 0 0 TFAP2D|p.R141H|1|0.24|ENSG00000008197|chr6:50715498-50715498|G/A|missense_variant TFAP2D|p.R141H|1|0.24|ENSG00000008197|chr6:50715498-50715498|G/A|missense_variant TFAP2D|p.R141H|1|0.24|ENSG00000008197|chr6:50715498-50715498|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.14453125 3 312.144838 933.412685 NaN NaN NaN NaN NaN NaN NaN 88.908 1 88.908 88.408 89.408 0 0 0 0 0.21486 1 17356 17356 1.6526 0.17072 1 15934 25838 10404 10407 16036 16036 -0.05668471845365275 GCPGPRCRWS 10 Unmodified _GCPGPRCRWS_ 0 0 0 ENST00000521475.1_2_8:18941830-18941950:-|nuORF ENST00000521475.1_2_8:18941830-18941950:-|nuORF ENST00000521475.1_2_8:18941830-18941950:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.51373291015625 3 373.504261 1117.49095 -0.29708 -0.00011096 0.64088 0.00023937 0.34381 0.00012841 373.5044833715752 18.362 1.6236 17.051 16.103 17.726 -1.3109 137 46 4 0 0 0 0.42762 1 2982 2982 10.151 0.076642 1 8928900 15935 10850 10405 10408 16037 16037 -0.06309362531783336 GCPGPRCRWS 10 Unmodified _GCPGPRCRWS_ 0 0 0 ENST00000521475.1_2_8:18941830-18941950:-|nuORF ENST00000521475.1_2_8:18941830-18941950:-|nuORF ENST00000521475.1_2_8:18941830-18941950:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 373.504261 1117.49095 -0.24362 -9.0994E-05 0.69262 0.0002587 0.449 0.0001677 373.50449850680025 17.187 1.7108 17.187 16.129 17.84 0 0.063765 3.7243E-05 NaN 10.151 143 48 4 NaN NaN NaN NaN 0 NaN NaN 0 11245000 15936 10850 10405 10408 -0.06309362531783336 GCPGPRCRWS 10 Unmodified _GCPGPRCRWS_ 0 0 0 ENST00000521475.1_2_8:18941830-18941950:-|nuORF ENST00000521475.1_2_8:18941830-18941950:-|nuORF ENST00000521475.1_2_8:18941830-18941950:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 373.504261 1117.49095 -0.38105 -0.00014232 0.63557 0.00023739 0.25452 9.5065E-05 373.5044773334755 18.404 1.346 17.132 16.283 17.629 -1.2722 0.008962 -2.6682E-05 NaN 10.151 122 38 4 NaN NaN NaN NaN 0 NaN NaN 0 6579000 15937 10850 10405 10408 -0.06309362531783336 GCSIIGGL 8 Unmodified _GCSIIGGL_ 0 0 0 REV__ENST00000546766.5_1_12:98989167-98989365:+|nuORF REV__ENST00000546766.5_1_12:98989167-98989365:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2130126953125 2 360.191457 718.368361 NaN NaN NaN NaN NaN NaN NaN 58.598 1 55.346 54.846 55.846 -3.2517 0 0 0 0.23899 1 10891 10891 1.3295 0 1 + 15938 22897 10406 10409 16038 16038 -0.002088759915295668 GCVGAPSL 8 Unmodified _GCVGAPSL_ 0 0 0 REV__nc|ENSG00000101224|P30305-3|CDC25B REV__nc|ENSG00000101224|P30305-3|CDC25B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.1754150390625 2 352.175807 702.337061 NaN NaN NaN NaN NaN NaN NaN 112.96 1 112.96 112.46 113.46 0 0 0 0 0.21486 1 22212 22212 0.69038 0 1 + 15939 13338 10407 10410 16039 16039 -0.026014490256329736 GDAIIEKGQRY 11 Unmodified _GDAIIEKGQRY_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 417.23040771484375 3 417.222693 1248.64625 NaN NaN NaN NaN NaN NaN NaN 63.703 1 60.705 60.205 61.205 -2.9975 0 0 0 0.23324 1 12314 12314 2.6312 0 1 + 15940 17221 10408 10411 16040 16040 0.031872830751581205 GDAMVGSL 8 Unmodified _GDAMVGSL_ 0 0 0 REV__ENST00000374270.7_1_9:114803757-114814695:-|nuORF REV__ENST00000374270.7_1_9:114803757-114814695:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.220458984375 2 375.178546 748.34254 NaN NaN NaN NaN NaN NaN NaN 76.422 1 73.007 72.507 73.507 -3.4151 0 0 0 0.21486 1 14917 14917 8.5933 0 1 + 15941 20790 10409 10412 16041 16041 -0.04169770233818326 GDAQDEKRY 9 Unmodified _GDAQDEKRY_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2728271484375 2 541.249077 1080.4836 0.50538 0.00027354 -0.32953 -0.00017836 0.17585 9.5176E-05 541.2488988310895 29.081 1.0406 27.084 26.763 27.804 -1.9962 76 29 4 0 0 0 0.5428 1 4877 4877 4.897 4.7741 1 21773000 15942 4550 10410 10413 16042 16042 -0.0534210032685678 GDATIPPPPP 10 Unmodified _GDATIPPPPP_ 0 0 0 ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1;DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant;DIAPH1|p.P703Hfs*65|2|0.51|ENSG00000131504|chr5:141573742-141573742|G/-|frameshift_variant ENSG00000131504|ENST00000389054|DIAPH1 ENSG00000131504|ENST00000389054|DIAPH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2536315917969 2 481.2531 960.491647 -0.15687 -7.5492E-05 0.28137 0.00013541 0.1245 5.9918E-05 481.2532178760344 109.54 0.66756 105.09 104.71 105.38 -4.4518 30 18 2 0 0 0 0.43454 1 20966 20966 28.487 1.6032 1 1373100 15943 3681 10411 10414 16043 16043 0.009820786605587273 GDAYTETGY 9 Unmodified _GDAYTETGY_ 0 0 0 REV__ENSG00000149596|ENST00000372980|JPH2 REV__ENSG00000149596|ENST00000372980|JPH2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 326.2325439453125 3 326.134662 975.382156 NaN NaN NaN NaN NaN NaN NaN 140.07 1 135.43 134.93 135.93 -4.6439 0 0 0 0.23508 1 27655 27655 2.9952 1.151 1 + 15944 17015 10412 10415 16044 16044 -0.10651971749427958 GDDEDSDQRGP 11 Unmodified _GDDEDSDQRGP_ 0 0 0 REV__TJP3|p.G399Afs*31|1|0.15|ENSG00000105289|chr19:3736229-3736229|G/-|frameshift_variant REV__TJP3|p.G399Afs*31|1|0.15|ENSG00000105289|chr19:3736229-3736229|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 595.1365356445312 2 595.731446 1189.44834 1.7878 0.001065 1.7003 0.0010129 3.4881 0.002078 595.7325085533038 26.56 0.30618 24.778 24.62 24.926 -1.7821 11 8 2 0 0 0 0.96205 1 4674 4674 1.4819 0.68827 1 463040 + 15945 14975 10413 10416 16045 16045 -0.13880807645318782 GDDGCCCF 8 Unmodified _GDDGCCCF_ 0 0 0 ENST00000174618.4_1_17:2288065-2288200:-|nuORF ENST00000174618.4_1_17:2288065-2288200:-|nuORF ENST00000174618.4_1_17:2288065-2288200:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 410.1097717285156 2 410.108949 818.203346 NaN NaN NaN NaN NaN NaN NaN 8.5268 1 8.5268 8.0268 9.0268 0 0 0 0 0.21486 1 902 902 0 0 1 15946 8079 10414 10417 16046 16046 -0.2130279918517317 GDDGCCCF 8 Unmodified _GDDGCCCF_ 0 0 0 ENST00000174618.4_1_17:2288065-2288200:-|nuORF ENST00000174618.4_1_17:2288065-2288200:-|nuORF ENST00000174618.4_1_17:2288065-2288200:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 820.209716796875 1 819.210622 818.203346 -0.43867 -0.00035936 0.50636 0.00041482 0.067689 5.5451E-05 819.2121862691346 7.8095 0.62457 6.7648 6.4742 7.0987 -1.0446 26 17 2 0 0 0 0.89856 1 711 711 0 0 1 207650 15947 8079 10414 10417 16047 16047 -0.2130279918517317 GDDGCCCF 8 Unmodified _GDDGCCCF_ 0 0 0 ENST00000174618.4_1_17:2288065-2288200:-|nuORF ENST00000174618.4_1_17:2288065-2288200:-|nuORF ENST00000174618.4_1_17:2288065-2288200:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 410.10919189453125 2 410.108949 818.203346 NaN NaN NaN NaN NaN NaN NaN 48.404 1 45.462 44.962 45.962 -2.9421 0 0 0 0.21486 1 8838 8838 0 0 1 15948 8079 10414 10417 16048 16048 -0.2130279918517317 GDDGCCCF 8 Unmodified _GDDGCCCF_ 0 0 0 ENST00000174618.4_1_17:2288065-2288200:-|nuORF ENST00000174618.4_1_17:2288065-2288200:-|nuORF ENST00000174618.4_1_17:2288065-2288200:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 818.7015380859375 1 819.210622 818.203346 -1.4321 -0.0011732 1.9229 0.0015752 0.49077 0.00040205 819.2131905094808 9.1908 1.4573 8.1562 6.9908 8.4481 -1.0347 56 40 2 0 0 0 0.9003 1 803 803 0 0 1 271800 15949 8079 10414 10417 16049 16049 -0.2130279918517317 GDDGCCCF 8 Unmodified _GDDGCCCF_ 0 0 0 ENST00000174618.4_1_17:2288065-2288200:-|nuORF ENST00000174618.4_1_17:2288065-2288200:-|nuORF ENST00000174618.4_1_17:2288065-2288200:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 819.210622 818.203346 -1.4322 -0.0011732 1.15 0.00094213 -0.28211 -0.00023111 819.212553835613 7.8299 0.61922 6.8151 6.4626 7.0818 -1.0148 0.025127 0.0002881 NaN 0 21 17 2 NaN NaN NaN NaN 0 NaN NaN 0 199910 15950 8079 10414 10417 -0.2130279918517317 GDELNKGSH 9 Unmodified _GDELNKGSH_ 0 0 0 REV__ENST00000567658.1_1_16:27144806-27145163:-|nuORF REV__ENST00000567658.1_1_16:27144806-27145163:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7327575683594 2 478.725238 955.435923 -0.02311 -1.1063E-05 -0.43527 -0.00020837 -0.45838 -0.00021944 478.724953224567 28.846 1.2893 28.846 28.252 29.541 0 66 36 3 0 0 0 0.45972 1 5024 5024 8.1555 8.1555 1 2806300 + 15951 23133 10415 10418 16050 16050 -0.04357754527029556 GDGGGGSL 8 Unmodified _GDGGGGSL_ 0 0 0 REV__ENST00000554273.1_1_14:50998823-50999316:-|nuORF REV__ENST00000554273.1_1_14:50998823-50999316:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16461181640625 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 152.98 1 147.76 147.26 148.26 -5.2209 0 0 0 0.23749 1 29650 29650 0.12286 0 1 + 15952 19970 10416 10419 16051 16051 -0.0634812960141744 GDGGGHAA 8 Unmodified _GDGGGHAA_ 0 0 0 REV__ENST00000259006.7_2_17:61775212-61775701:-|nuORF REV__ENST00000259006.7_2_17:61775212-61775701:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.1654357910156 2 321.135527 640.256502 NaN NaN NaN NaN NaN NaN NaN 51.05 1 51.05 50.55 51.55 0 0 0 0 0.2396 1 9677 9677 0.12286 0.11459 1 + 15953 20150 10417 10420 16052 16052 -0.07801594024329006 GDGQMGGQ 8 Unmodified _GDGQMGGQ_ 0 0 0 ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C;RIMBP3B|p.G1593D|1|0.19|ENSG00000274600|chr22:21388636-21388636|G/A|missense_variant ENSG00000275793|ENST00000619918|RIMBP3 ENSG00000275793|ENST00000619918|RIMBP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2171325683594 2 375.147778 748.281002 NaN NaN NaN NaN NaN NaN NaN 71.324 1 67.744 67.244 68.244 -3.5798 0 0 0 0.23899 1 13449 13449 1.3295 0 1 15954 6836 10418 10421 16053 16053 -0.10320701933108012 GDGYGGSS 8 Unmodified _GDGYGGSS_ 0 0 0 REV__ENSG00000004487|ENST00000400181|KDM1A REV__ENSG00000004487|ENST00000400181|KDM1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.85748291015625 2 350.13265 698.250748 NaN NaN NaN NaN NaN NaN NaN 44.672 1 41.906 41.406 42.406 -2.7661 0 0 0 0.2396 1 8094 8094 0.30703 0.30703 1 + 15955 13836 10419 10422 16054 16054 -0.1104473732665383 GDHPRLQP 8 Unmodified _GDHPRLQP_ 0 0 0 ENST00000307746.8_1_4:5016941-5021095:-|nuORF ENST00000307746.8_1_4:5016941-5021095:-|nuORF ENST00000307746.8_1_4:5016941-5021095:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24090576171875 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 62.056 1 59.095 58.595 59.595 -2.9614 0 0 0 0.23487 1 11970 11970 0.68139 0.6174 1 15956 8617 10420 10423 16055 16055 0.004668632977086418 GDHPTDGN 8 Unmodified _GDHPTDGN_ 0 0 0 REV__SLC4A4|p.F457Lfs*9|1|0.4|ENSG00000080493|chr4:71453538-71453538|T/-|frameshift_variant REV__SLC4A4|p.F457Lfs*9|1|0.4|ENSG00000080493|chr4:71453538-71453538|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 406.6605224609375 2 406.662106 811.30966 NaN NaN NaN NaN NaN NaN NaN 65.22 1 65.22 64.72 65.72 0 0 0 0 0.23811 1 12570 12570 0.12286 0 1 + 15957 14408 10421 10424 16056 16056 -0.10354261032330214 GDHVLQKM 8 Unmodified _GDHVLQKM_ 0 0 0 REV__ENSG00000156140|ENST00000286657|ADAMTS3 REV__ENSG00000156140|ENST00000286657|ADAMTS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1707763671875 3 309.828739 926.464386 -0.057903 -1.794E-05 1.2533 0.00038829 1.1954 0.00037035 309.82905625746724 42.09 0.28626 39.439 39.321 39.607 -2.651 11 7 2 0 0 0 0.73426 1 7587 7587 6.7232 1.8262 1 583860 + 15958 17247 10422 10425 16057 16057 -0.00178728151456653 GDHVQPPEGR 10 Unmodified _GDHVQPPEGR_ 0 0 0 ENSG00000254093|ENST00000314787|PINX1 ENSG00000254093|ENST00000314787|PINX1 ENSG00000254093|ENST00000314787|PINX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7679443359375 2 546.265062 1090.51557 0.024497 1.3382E-05 0.50306 0.0002748 0.52755 0.00028818 546.265250398547 52.191 1.079 49.139 48.76 49.839 -3.0517 69 30 4 0 0 0 0.68961 1 9610 9610 12.241 0.74595 1 11962000 15959 7922 10423 10426 16058 16058 -0.026066878530400572 GDKEVEWPDEG 11 Unmodified _GDKEVEWPDEG_ 0 0 0 REV__ZNF354A|p.T185Nfs*6|1|0.36|ENSG00000169131|chr5:178713324-178713325|-/T|frameshift_variant REV__ZNF354A|p.T185Nfs*6|1|0.36|ENSG00000169131|chr5:178713324-178713325|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7779541015625 2 630.772582 1259.53061 NaN NaN NaN NaN NaN NaN NaN 147.87 1 142.81 142.31 143.31 -5.0595 0 0 0 0.22765 1 28634 28634 10.151 1.995 1 + 15960 18079 10424 10427 16059 16059 -0.08877285566381943 GDKRFYIK 8 Unmodified _GDKRFYIK_ 0 0 0 REV__tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1 REV__tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.0397644042969 3 342.862548 1025.56581 -2.2432 -0.00076909 -1.7503 -0.00060011 -3.9935 -0.0013692 342.861801773722 15.779 0.17157 14.426 14.341 14.512 -1.3534 6 4 2 0 0 0 1.0277 1 2194 2194 0.40072 0 1 286950 + 15961 24856 10425 10428 16060 16060 0.05405466542742943 GDLAAVALIN 10 Unmodified _GDLAAVALIN_ 0 0 0 ENSG00000162460|ENST00000375782|TMEM82 ENSG00000162460|ENST00000375782|TMEM82 ENSG00000162460|ENST00000375782|TMEM82 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72760009765625 2 478.7742 955.533846 0.40312 0.000193 -0.27302 -0.00013072 0.1301 6.2287E-05 478.7740026416822 156.25 0.70801 150.98 150.59 151.3 -5.2712 32 19 2 0 0 0 0.39883 1 30350 30350 8.7518 0 1 2077500 15962 5336 10426 10429 16061 16061 0.0543005406894963 GDLGVTVVL 9 Unmodified _GDLGVTVVL_ 0 0 0 REV__nc|ENSG00000129566|Q99973-2|TEP1 REV__nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2159423828125 2 436.758018 871.501483 0.1617 7.0624E-05 0.1224 5.346E-05 0.2841 0.00012408 436.75812030763603 148.95 0.17818 143.89 143.74 143.92 -5.0595 5 4 2 0 0 0 0.44262 1 28852 28852 23.148 0 1 844250 + 15963 15967 10427 10430 16062 16062 0.06059266665965879 GDLPVGNYQ 9 Unmodified _GDLPVGNYQ_ 0 0 0 REV__nc|ENSG00000183684|Q86V81|ALYREF REV__nc|ENSG00000183684|Q86V81|ALYREF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7678527832031 2 481.732532 961.45051 NaN NaN NaN NaN NaN NaN NaN 154.49 1 149.71 149.21 150.21 -4.7791 0 0 0 0.23508 1 30706 30706 10.824 0 1 + 15964 18850 10428 10431 16063 16063 -0.031756823789010014 GDNTLNLKS 9 Unmodified _GDNTLNLKS_ 0 0 0 REV__ENSG00000214107|ENST00000397548|MAGEB1 REV__ENSG00000214107|ENST00000397548|MAGEB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23681640625 2 481.251089 960.487624 -0.0060266 -2.9003E-06 0.7131 0.00034318 0.70708 0.00034028 481.2515320273495 26.638 0.40792 24.716 24.576 24.984 -1.9222 16 11 2 0 0 0 0.35556 1 4404 4404 12.241 12.113 1 798010 + 15965 19659 10429 10432 16064 16064 0.005799891668630153 GDQSFQIEY 9 Unmodified _GDQSFQIEY_ 0 0 0 REV__ENSG00000127415|ENST00000514224|IDUA REV__ENSG00000127415|ENST00000514224|IDUA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7930297851562 2 543.740554 1085.46655 NaN NaN NaN NaN NaN NaN NaN 116.24 1 111.75 111.25 112.25 -4.486 0 0 0 0.23277 1 22918 22918 13.906 1.3745 1 + 15966 15885 10430 10433 16065 16065 -0.07276020932658867 GDRGSVSSY 9 Unmodified _GDRGSVSSY_ 0 0 0 ENSG00000124507|ENST00000244458|PACSIN1 ENSG00000124507|ENST00000244458|PACSIN1 ENSG00000124507|ENST00000244458|PACSIN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 464.17706298828125 2 464.211963 926.409374 NaN NaN NaN NaN NaN NaN NaN 129.92 1 125.09 124.59 125.59 -4.8355 0 0 0 0.23508 1 24945 24945 11.64 0 1 15967 3318 10431 10434 16066 16066 -0.05677443418369421 GDRGYMDKDGY 11 Unmodified _GDRGYMDKDGY_ 0 0 0 ENSG00000005187|ENST00000289416|ACSM3;ACSM3|p.T549Nfs*29|2|0.31|ENSG00000005187|chr16:20796453-20796454|-/A|frameshift_variant ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 638.7522583007812 2 638.766777 1275.519 NaN NaN NaN NaN NaN NaN NaN 163.09 1 157.95 157.45 158.45 -5.1438 0 0 0 0.22632 1 31719 31719 1.4074 0 1 15968 40 10432 10435 16067 16067 -0.10773805861344954 GDSDGGEL 8 Unmodified _GDSDGGEL_ 0 0 0 ENSG00000132749|ENST00000255087|TESMIN;nc|ENSG00000132749|Q9Y4I5-3|TESMIN;nc|ENSG00000132749|Q9Y4I5-2|TESMIN ENSG00000132749|ENST00000255087|TESMIN ENSG00000132749|ENST00000255087|TESMIN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21624755859375 2 375.15104 748.287527 NaN NaN NaN NaN NaN NaN NaN 72.465 1 68.926 68.426 69.426 -3.5385 0 0 0 0.21486 1 13741 13741 5.7604 3.1829 1 15969 3760 10433 10436 16068 16068 -0.09668485500742463 GDSGSLFSPSK 11 Unmodified _GDSGSLFSPSK_ 0 0 0 CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2603759765625 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 16.674 1 16.674 16.174 17.174 0 0 0 0 0.17845 1 2600 2600 23.79 1.1317 1 15970 717 10434 10437 16069 16069 -0.028280455242793323 GDTGKRLC 8 Unmodified _GDTGKRLC_ 0 0 0 REV__ENST00000425050.5_1_10:109631494-109803030:-|nuORF REV__ENST00000425050.5_1_10:109631494-109803030:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2397766113281 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 14.757 1 13.546 13.046 14.046 -1.2106 0 0 0 0.2396 1 1981 1981 0 0 1 + 15971 21554 10435 10438 16070 16070 -0.012835877026077469 GDTIGLVY 8 Unmodified _GDTIGLVY_ 0 0 0 REV__tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 REV__tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4708862304688 1 837.435261 836.427984 0.38445 0.00032195 0.059095 4.9488E-05 0.44354 0.00037144 837.4352301520403 153.76 0.93839 148.5 148.06 148.99 -5.2669 57 26 3 0 0 0 0.40661 1 29820 29820 32.117 5.7757 1 18798000 + 15972 25364 10436 10439 16071 16071 0.003227182234695647 GDTIGLVY 8 Unmodified _GDTIGLVY_ 0 0 0 REV__tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 REV__tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4702758789062 1 837.435261 836.427984 0.55362 0.00046362 -0.19389 -0.00016237 0.35973 0.00030125 837.4349373777342 153.72 0.90225 148.5 148.04 148.94 -5.2209 58 25 3 0 0 0 8448 1 29736 29736 0.68139 0.42991 1 18913000 + 15973 25364 10436 10439 16072 16072 0.003227182234695647 GDVIGLQVD 9 Unmodified _GDVIGLQVD_ 0 0 0 ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1 ENSG00000175115|ENST00000320580|PACS1 ENSG00000175115|ENST00000320580|PACS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2329406738281 2 458.242732 914.470912 0.18338 8.403E-05 -0.10219 -4.6827E-05 0.081188 3.7204E-05 458.242665784814 93.21 1.4034 89.066 88.557 89.96 -4.1435 116 40 5 0 0 0 0.5428 1 17944 17944 4.897 0 1 108010000 15974 6386 10437 10440 16073 16073 0.010254882809022092 GDVLRGTG 8 Unmodified _GDVLRGTG_ 0 0 0 ENST00000502486.5_2_4:42153705-42154329:-|nuORF ENST00000502486.5_2_4:42153705-42154329:-|nuORF ENST00000502486.5_2_4:42153705-42154329:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7083740234375 2 387.70886 773.403166 -0.05003 -1.9397E-05 -0.35278 -0.00013678 -0.40281 -0.00015617 387.70870383181176 24.876 0.8822 24.876 24.475 25.358 0 62 25 3 0 0 0 0.35341 1 4324 4324 34.402 0 1 3338300 15975 10626 10438 10441 16074 16074 0.007400831407608166 GDVLRGTG 8 Unmodified _GDVLRGTG_ 0 0 0 ENST00000502486.5_2_4:42153705-42154329:-|nuORF ENST00000502486.5_2_4:42153705-42154329:-|nuORF ENST00000502486.5_2_4:42153705-42154329:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7088623046875 2 387.70886 773.403166 0.90787 0.00035199 -0.69535 -0.00026959 0.21252 8.2397E-05 387.70852817670254 26.214 0.88741 24.432 24.039 24.926 -1.7821 58 25 3 0 0 0 0.12259 2 4615 4615;4659 58.679 6.4105 1 4653000 15976 10626 10438 10441 16075;16076 16075 0.007400831407608166 GDVNVVPMV 9 Unmodified _GDVNVVPMV_ 0 0 0 REV__ENSG00000080618|ENST00000181383|CPB2 REV__ENSG00000080618|ENST00000181383|CPB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2410888671875 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 34.242 1 31.924 31.424 32.424 -2.3175 0 0 0 0.19636 1 6281 6281 2.4985 1.2837 1 + 15977 14415 10439 10442 16077 16077 0.0017073627145691717 GDVPPPPPP 9 Unmodified _GDVPPPPPP_ 0 0 0 REV__ENST00000575477.5_1_17:2497121-2517003:+|nuORF REV__ENST00000575477.5_1_17:2497121-2517003:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.231201171875 2 436.729261 871.443968 0.043328 1.8922E-05 -0.27809 -0.00012145 -0.23477 -0.00010253 436.72909411444067 37.22 3.601 34.882 33.852 37.453 -2.3375 208 102 3 0 0 0 0.12321 1 6447 6447 4.7159 0 1 3414800 + 15978 23203 10440 10443 16078 16078 0.00310424460383274 GDWCYCHY 8 Unmodified _GDWCYCHY_ 0 0 0 ENSG00000267710|ENST00000649256|EDDM13 ENSG00000267710|ENST00000649256|EDDM13 ENSG00000267710|ENST00000649256|EDDM13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6836547851562 2 523.678388 1045.34222 NaN NaN NaN NaN NaN NaN NaN 125.71 1 121.11 120.61 121.61 -4.5984 0 0 0 0.23294 1 24785 24785 0.62683 0 1 15979 7989 10441 10444 16079 16079 -0.1786351322534756 GDWCYCHY 8 Unmodified _GDWCYCHY_ 0 0 0 ENSG00000267710|ENST00000649256|EDDM13 ENSG00000267710|ENST00000649256|EDDM13 ENSG00000267710|ENST00000649256|EDDM13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6929931640625 2 523.678388 1045.34222 NaN NaN NaN NaN NaN NaN NaN 126.15 1 121.36 120.86 121.86 -4.7958 0 0 0 0.23711 1 24215 24215 0.62683 0.21856 1 15980 7989 10441 10444 16080 16080 -0.1786351322534756 GDWCYCHY 8 Unmodified _GDWCYCHY_ 0 0 0 ENSG00000267710|ENST00000649256|EDDM13 ENSG00000267710|ENST00000649256|EDDM13 ENSG00000267710|ENST00000649256|EDDM13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.684814453125 2 523.678388 1045.34222 NaN NaN NaN NaN NaN NaN NaN 126.18 1 121.39 120.89 121.89 -4.7958 0 0 0 0.2396 1 24220 24220 0.12286 0 1 15981 7989 10441 10444 16081 16081 -0.1786351322534756 GDWCYCHY 8 Unmodified _GDWCYCHY_ 0 0 0 ENSG00000267710|ENST00000649256|EDDM13 ENSG00000267710|ENST00000649256|EDDM13 ENSG00000267710|ENST00000649256|EDDM13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6792602539062 2 523.678388 1045.34222 0.021668 1.1347E-05 -2.6492 -0.0013873 -2.6275 -0.001376 524.1778807900143 78.775 0.48756 75.099 74.851 75.339 -3.676 22 13 2 0 0 0 0.83271 1 14984 14984 2.8892 0.31174 1 821140 15982 7989 10441 10444 16082 16082 -0.1786351322534756 GDWLQERYEI 10 Unmodified _GDWLQERYEI_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;ENSG00000179335|ENST00000395066|CLK3 nc|ENSG00000176444|P49760-3|CLK2;ENST00000454830.6_1_15:74914310-74922221:+|nuORF nc|ENSG00000176444|P49760-3|CLK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.216796875 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 87.649 1 83.899 83.399 84.399 -3.7501 0 0 0 0.22588 1 16770 16770 3.5871 0 1 15983 6468;6626 10442 10445 16083 16083 -0.026887096788186682 GDWLQTAQ 8 Unmodified _GDWLQTAQ_ 0 0 0 REV__ENSG00000166153|ENST00000550587|DEPDC4 REV__ENSG00000166153|ENST00000550587|DEPDC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.2270812988281 3 306.815375 917.424296 -0.61901 -0.00018992 0.32428 9.9495E-05 -0.29473 -9.0427E-05 306.8151695327632 7.7377 0.36117 7.7377 7.4773 7.8385 0 12 9 2 0 0 0 1.0271 1 756 756 0.40072 0.050084 1 51272 + 15984 17829 10443 10446 16084 16084 -0.037719515503795265 GDWLQTAQ 8 Unmodified _GDWLQTAQ_ 0 0 0 REV__ENSG00000166153|ENST00000550587|DEPDC4 REV__ENSG00000166153|ENST00000550587|DEPDC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 306.815375 917.424296 -2.2942 -0.00070388 2.9642 0.00090947 0.67006 0.00020558 306.81575878920586 8.9758 0.14086 7.9411 7.8477 7.9886 -1.0347 0.12761 0.0020564 NaN 0.40072 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 30828 + 15985 17829 10443 10446 -0.037719515503795265 GDWPRAPI 8 Unmodified _GDWPRAPI_ 0 0 0 REV__ENST00000429422.5_2_3:47893124-47893238:-|nuORF REV__ENST00000429422.5_2_3:47893124-47893238:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 456.23980712890625 2 456.240327 910.466101 NaN NaN NaN NaN NaN NaN NaN 69.016 1 65.836 65.336 66.336 -3.1796 0 0 0 0.21486 1 13412 13412 12.532 0.89125 1 + 15986 21601 10444 10447 16085 16085 0.00728648928804887 GDYNSRTSF 9 Unmodified _GDYNSRTSF_ 0 0 0 REV__ENSG00000116668|ENST00000367500|SWT1 REV__ENSG00000116668|ENST00000367500|SWT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6819458007812 2 523.73052 1045.44649 NaN NaN NaN NaN NaN NaN NaN 139.96 1 135.01 134.51 135.51 -4.952 0 0 0 0.19679 1 26931 26931 1.2148 0 1 + 15987 15488 10445 10448 16086 16086 -0.07441771872618119 GDYPSDNLY 9 Unmodified _GDYPSDNLY_ 0 0 0 REV__DDR1|p.T214P|1|0.37|ENSG00000204580|chr6:30891454-30891454|A/C|missense_variant REV__DDR1|p.T214P|1|0.37|ENSG00000204580|chr6:30891454-30891454|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2634887695312 2 522.219454 1042.42436 -0.038491 -2.01E-05 -0.68565 -0.00035806 -0.72414 -0.00037816 522.2191954296352 160.94 0.38895 156.15 155.96 156.35 -4.7952 15 10 2 0 0 0 0.45972 1 32045 32045 8.1555 6.4133 1 1860100 + 15988 13654 10446 10449 16087 16087 -0.0951599634104241 GEAAGSPVP 9 Unmodified _GEAAGSPVP_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF;nc|ENSG00000126453|Q9HB09-2|BCL2L12;nc|ENSG00000126453|Q9HB09-3|BCL2L12;ENSG00000126453|ENST00000246784|BCL2L12 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3872680664062 1 784.383559 783.376283 0.55082 0.00043205 0.16277 0.00012767 0.71359 0.00055973 784.383569730959 37.775 1.2937 37.775 37.06 38.354 0 79 36 3 0 0 0 0.037776 5 7005 6918;6920;6961;6962;7005 64.236 10.502 1 8153900 15989 10712 10447 10450 16088;16089;16090;16091;16092 16092 -0.024070254704270155 GEAAGSPVP 9 Unmodified _GEAAGSPVP_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF;nc|ENSG00000126453|Q9HB09-2|BCL2L12;nc|ENSG00000126453|Q9HB09-3|BCL2L12;ENSG00000126453|ENST00000246784|BCL2L12 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3870239257812 1 784.383559 783.376283 0.28989 0.00022738 0.24137 0.00018933 0.53126 0.00041671 784.3837015817328 40.257 1.3429 37.623 36.914 38.257 -2.6348 82 37 3 0 0 0 0.034088 6 7492 7396;7442;7444;7492;7541;7603 71.134 25.313 1 7948700 15990 10712 10447 10450 16093;16094;16095;16096;16097;16098 16096 -0.024070254704270155 GEAAGSPVP 9 Unmodified _GEAAGSPVP_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF;nc|ENSG00000126453|Q9HB09-2|BCL2L12;nc|ENSG00000126453|Q9HB09-3|BCL2L12;ENSG00000126453|ENST00000246784|BCL2L12 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.386962890625 1 784.383559 783.376283 0.23154 0.00018162 0.41269 0.00032371 0.64423 0.00050533 784.3837515836874 40.125 1.2028 37.585 37.039 38.242 -2.5398 80 33 3 0 0 0 0.039907 4 7182 7143;7182;7226;7227 54.774 6.0303 1 9886900 15991 10712 10447 10450 16099;16100;16101;16102 16100 -0.024070254704270155 GEAAGSPVP 9 Unmodified _GEAAGSPVP_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF;nc|ENSG00000126453|Q9HB09-2|BCL2L12;nc|ENSG00000126453|Q9HB09-3|BCL2L12;ENSG00000126453|ENST00000246784|BCL2L12 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3865356445312 1 784.383559 783.376283 0.29466 0.00023112 0.36493 0.00028624 0.65958 0.00051737 784.3837568888655 40.146 1.3005 37.657 37.019 38.319 -2.4896 78 36 3 0 0 0 0.039965 4 7180 7131;7134;7180;7226 64.236 3.8468 1 8910900 15992 10712 10447 10450 16103;16104;16105;16106 16105 -0.024070254704270155 GEAEIHFL 8 Unmodified _GEAEIHFL_ 0 0 0 EPB41L1|p.Q464Nfs*19|1|0.16|ENSG00000088367|chr20:36194295-36194295|G/-|frameshift_variant;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1 EPB41L1|p.Q464Nfs*19|1|0.16|ENSG00000088367|chr20:36194295-36194295|G/-|frameshift_variant EPB41L1|p.Q464Nfs*19|1|0.16|ENSG00000088367|chr20:36194295-36194295|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2333068847656 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 32.515 1 30.285 29.785 30.785 -2.2305 0 0 0 0.23664 1 5927 5927 3.2813 1.9518 1 15993 1729 10448 10451 16107 16107 -0.01086477027968158 GEAGDLQVAP 10 Unmodified _GEAGDLQVAP_ 0 0 0 REV__ENST00000582416.5_3_17:17880902-17880956:+|nuORF REV__ENST00000582416.5_3_17:17880902-17880956:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72967529296875 2 478.737814 955.461075 0.051633 2.4719E-05 1.6501 0.00078995 1.7017 0.00081467 478.738578329826 128.9 0.6694 124.27 123.76 124.43 -4.6292 28 18 2 0 0 0 0.4708 2 25420 25420;25432 26.268 4.7312 1 1673500 + 15994 23250 10449 10452 16108;16109 16108 -0.018436997244748454 GEAGLQLAD 9 Unmodified _GEAGLQLAD_ 0 0 0 REV__nc|ENSG00000124006|O75147-4|OBSL1 REV__nc|ENSG00000124006|O75147-4|OBSL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2290954589844 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 42.093 1 39.374 38.874 39.874 -2.7191 0 0 0 0.19512 1 7867 7867 12.241 0 1 + 15995 15746 10450 10453 16110 16110 -0.017353712702401936 GEAKIEDLS 9 Unmodified _GEAKIEDLS_ 0 0 0 ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENST00000419462.1_1_8:102381493-102381775:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P;ENSG00000136274|ENST00000490531|NACAD;NACAD|p.I1557Rfs*6|1|0.03|ENSG00000136274|chr7:45080644-45080645|-/CCATC|frameshift_variant ENSG00000196531|ENST00000454682|NACA;ENSG00000136274|ENST00000490531|NACAD ENSG00000196531|ENST00000454682|NACA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2437744140625 2 481.245472 960.476391 0.40697 0.00019585 -1.5246 -0.0007337 -1.1176 -0.00053785 481.24470624170857 69.919 0.62644 66.339 66.141 66.768 -3.5798 30 17 3 0 0 0 0.49624 1 13254 13254 2.6312 2.3658 1 2048800 15996 7279;4001 10451 10454 16111 16111 -0.0054283292729451205 GEALFCFGL 9 Unmodified _GEALFCFGL_ 0 0 0 REV__ENST00000398733.7_1_5:138940889-138941081:+|nuORF REV__ENST00000398733.7_1_5:138940889-138941081:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72967529296875 2 478.730946 955.447339 NaN NaN NaN NaN NaN NaN NaN 128.92 1 124.29 123.79 124.79 -4.6292 0 0 0 0.18274 1 25417 25417 4.7159 2.0847 1 + 15997 21334 10452 10455 16112 16112 -0.032166487572681035 GEALGFVIIY 10 Unmodified _GEALGFVIIY_ 0 0 0 REV__ENST00000476264.6_1_2:27703990-27712589:-|nuORF REV__ENST00000476264.6_1_2:27703990-27712589:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2651977539062 2 541.30005 1080.58555 NaN NaN NaN NaN NaN NaN NaN 111.67 1 107.18 106.68 107.68 -4.4915 0 0 0 0.22588 1 21432 21432 10.824 1.4408 1 + 15998 16426 10453 10456 16113 16113 0.048477977628635927 GEALPHVVP 9 Unmodified _GEALPHVVP_ 0 0 0 ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENST00000491496.1_1_7:803580-810256:+|nuORF ENSG00000164818|ENST00000297440|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.231689453125 2 459.75581 917.497067 -0.021264 -9.7765E-06 -0.2653 -0.00012197 -0.28657 -0.00013175 459.75576423927293 94.124 0.65433 94.124 93.759 94.413 0 35 18 2 0 0 0 0.28819 1 18474 18474 32.305 16.458 1 1645900 15999 5567 10454 10457 16114 16114 0.03501802243044949 GEALPHVVP 9 Unmodified _GEALPHVVP_ 0 0 0 ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENST00000491496.1_1_7:803580-810256:+|nuORF ENSG00000164818|ENST00000297440|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.75581 917.497067 0.13394 6.158E-05 -0.066514 -3.058E-05 0.067426 3.1E-05 459.75585553312396 98.232 0.8676 93.963 93.358 94.226 -4.2692 0.025998 -6.4835E-05 NaN 32.305 44 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1982100 16000 5567 10454 10457 0.03501802243044949 GEALPHVVP 9 Unmodified _GEALPHVVP_ 0 0 0 ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENST00000491496.1_1_7:803580-810256:+|nuORF ENSG00000164818|ENST00000297440|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.75581 917.497067 0.047171 2.1687E-05 0.046123 2.1206E-05 0.093294 4.2893E-05 459.75590195068276 97.791 0.76584 93.871 93.468 94.234 -3.9194 -0.06589 3.8737E-05 NaN 32.305 41 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1902600 16001 5567 10454 10457 0.03501802243044949 GEAPPGTPP 9 Unmodified _GEAPPGTPP_ 0 0 0 ENSG00000131116|ENST00000300811|ZNF428 ENSG00000131116|ENST00000300811|ZNF428 ENSG00000131116|ENST00000300811|ZNF428 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 824.4419555664062 1 822.399209 821.391933 0.40218 0.00033076 0.16781 0.00013801 0.56999 0.00046876 822.3992811062894 33.725 2.1857 31.407 30.312 32.498 -2.3175 155 62 3 0 0 0 0.40602 1 6142 6142 25.399 0 1 9773500 16002 3660 10455 10458 16115 16115 -0.025907389533699643 GEAPPGTPP 9 Unmodified _GEAPPGTPP_ 0 0 0 ENSG00000131116|ENST00000300811|ZNF428 ENSG00000131116|ENST00000300811|ZNF428 ENSG00000131116|ENST00000300811|ZNF428 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 822.399209 821.391933 0.50652 0.00041656 0.11193 9.2051E-05 0.61845 0.00050862 822.399249438187 31.164 2.1272 31.164 30.272 32.399 0 -0.17147 -2.5864E-05 NaN 25.399 139 60 3 NaN NaN NaN NaN 0 NaN NaN 0 9602400 16003 3660 10455 10458 -0.025907389533699643 GEAPPGTPP 9 Unmodified _GEAPPGTPP_ 0 0 0 ENSG00000131116|ENST00000300811|ZNF428 ENSG00000131116|ENST00000300811|ZNF428 ENSG00000131116|ENST00000300811|ZNF428 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 822.399209 821.391933 0.45393 0.00037331 0.24315 0.00019997 0.69708 0.00057328 822.3993345732412 33.493 2.3318 31.346 30.306 32.638 -2.1468 0.010205 8.2053E-05 NaN 25.399 165 66 3 NaN NaN NaN NaN 0 NaN NaN 0 9930200 16004 3660 10455 10458 -0.025907389533699643 GEAPPGTPP 9 Unmodified _GEAPPGTPP_ 0 0 0 ENSG00000131116|ENST00000300811|ZNF428 ENSG00000131116|ENST00000300811|ZNF428 ENSG00000131116|ENST00000300811|ZNF428 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 822.399209 821.391933 0.57195 0.00047037 0.019715 1.6213E-05 0.59167 0.00048659 822.3991086503012 33.641 2.3699 31.425 30.316 32.686 -2.2158 0.089863 -0.0001017 NaN 25.399 168 67 3 NaN NaN NaN NaN 0 NaN NaN 0 10487000 16005 3660 10455 10458 -0.025907389533699643 GEASAAAVALG 11 Unmodified _GEASAAAVALG_ 0 0 0 nc|ENSG00000134444|Q9P260-2|RELCH;nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260-2|RELCH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2246398925781 2 458.740357 915.46616 -0.07784 -3.5708E-05 -1.4881 -0.00068265 -1.5659 -0.00071836 458.74050534733146 40.887 1.0159 38.347 37.815 38.831 -2.5398 81 28 4 0 0 0 0.40042 1 7259 7259 34.402 10.381 1 6848500 16006 12335 10456 10459 16116 16116 0.00504604138131981 GEAVQEIQ 8 Unmodified _GEAVQEIQ_ 0 0 0 HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|105|2|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|105|2|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|105|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2195129394531 2 437.219257 872.423961 -0.48688 -0.00021287 0.5538 0.00024213 0.06692 2.9259E-05 437.2194805166386 35.743 1.1014 33.349 32.915 34.016 -2.3938 62 30 3 0 0 0 0.23433 1 6523 6523 42.095 4.1206 1 3754500 16007 11877 10457 10460 16117 16117 -0.01735371270228825 GEAVQEIQ 8 Unmodified _GEAVQEIQ_ 0 0 0 HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|105|2|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|105|2|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|105|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2195739746094 2 437.219257 872.423961 0.10578 4.6249E-05 -0.085915 -3.7564E-05 0.019865 8.6852E-06 437.21922158631816 35.655 1.2131 33.402 33.09 34.303 -2.2527 74 34 3 0 0 0 0.16192 1 6260 6260 50.855 3.1063 1 3794300 16008 11877 10457 10460 16118 16118 -0.01735371270228825 GEAVQEIQ 8 Unmodified _GEAVQEIQ_ 0 0 0 HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|105|2|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|105|2|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|105|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2183837890625 2 437.219257 872.423961 0.12772 5.584E-05 -0.0054612 -2.3878E-06 0.12225 5.3452E-05 437.2192433086036 35.708 0.94761 33.432 33.037 33.984 -2.2766 57 26 3 0 0 0 0.68128 1 6224 6224 16.942 1.0951 1 3242600 16009 11877 10457 10460 16119 16119 -0.01735371270228825 GEAWSSER 8 Unmodified _GEAWSSER_ 0 0 0 REV__ENST00000418218.5_1_2:241903565-241906820:-|nuORF REV__ENST00000418218.5_1_2:241903565-241906820:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.539794921875 2 461.206681 920.398809 -0.19937 -9.1952E-05 0.17186 7.9264E-05 -0.027509 -1.2687E-05 461.20668341507746 109.05 0.65482 104.6 104.26 104.91 -4.4518 30 18 2 0 0 0 8448 1 20951 20951 6.2058 6.1418 1 918950 + 16010 21481 10458 10461 16120 16120 -0.06457426072802264 GEAWSSER 8 Unmodified _GEAWSSER_ 0 0 0 REV__ENST00000418218.5_1_2:241903565-241906820:-|nuORF REV__ENST00000418218.5_1_2:241903565-241906820:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.206681 920.398809 0.51334 0.00023675 -0.41907 -0.00019328 0.094269 4.3478E-05 461.20641975411314 104.65 0.58922 104.65 104.28 104.86 0 0.06148 -0.00045218 NaN 6.2058 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1193100 + 16011 21481 10458 10461 -0.06457426072802264 GEAWSSER 8 Unmodified _GEAWSSER_ 0 0 0 REV__ENST00000418218.5_1_2:241903565-241906820:-|nuORF REV__ENST00000418218.5_1_2:241903565-241906820:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.206681 920.398809 -0.55968 -0.00025813 0.31788 0.00014661 -0.24179 -0.00011152 461.2067723258567 108.91 0.59505 104.54 104.22 104.82 -4.3776 -0.048562 0.00022759 NaN 6.2058 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1433700 + 16012 21481 10458 10461 -0.06457426072802264 GEAWSSER 8 Unmodified _GEAWSSER_ 0 0 0 REV__ENST00000418218.5_1_2:241903565-241906820:-|nuORF REV__ENST00000418218.5_1_2:241903565-241906820:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.206681 920.398809 0.66727 0.00030775 0.21125 9.7428E-05 0.87852 0.00040518 461.2063083671156 108.74 0.76747 104.56 104.18 104.95 -4.1826 -0.024734 0.00012923 NaN 6.2058 30 21 3 NaN NaN NaN NaN 0 NaN NaN 0 1155600 + 16013 21481 10458 10461 -0.06457426072802264 GEDADQGLNY 10 Unmodified _GEDADQGLNY_ 0 0 0 REV__nc|ENSG00000066044|Q15717-2|ELAVL1 REV__nc|ENSG00000066044|Q15717-2|ELAVL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27490234375 2 541.225268 1080.43598 NaN NaN NaN NaN NaN NaN NaN 126.46 1 121.84 121.34 122.34 -4.6172 0 0 0 0.22588 1 24932 24932 10.824 0 1 + 16014 14199 10459 10462 16121 16121 -0.10101799317703808 GEEAEYTVEP 10 Unmodified _GEEAEYTVEP_ 0 0 0 REV__ENST00000471434.1_1_17:73897061-73897597:-|nuORF REV__ENST00000471434.1_1_17:73897061-73897597:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2128601074219 3 375.16451 1122.4717 -0.16614 -6.2328E-05 -2.0503 -0.00076918 -2.2164 -0.00083151 375.16384368705985 34.195 0.44352 34.195 34.005 34.449 0 15 12 2 0 0 0 0.75099 1 6217 6217 5.4027 0.10583 1 451610 + 16015 19524 10460 10463 16122 16122 -0.08463761860707564 GEEAEYTVEP 10 Unmodified _GEEAEYTVEP_ 0 0 0 REV__ENST00000471434.1_1_17:73897061-73897597:-|nuORF REV__ENST00000471434.1_1_17:73897061-73897597:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.16451 1122.4717 -0.16614 -6.2328E-05 -2.0503 -0.00076918 -2.2164 -0.00083151 375.16384368705985 34.195 0.44352 34.195 34.005 34.449 0 -0.11334 -0.00034189 NaN 5.4027 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 451610 + 16016 19524 10460 10463 -0.08463761860707564 GEEAEYTVEP 10 Unmodified _GEEAEYTVEP_ 0 0 0 REV__ENST00000471434.1_1_17:73897061-73897597:-|nuORF REV__ENST00000471434.1_1_17:73897061-73897597:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.16451 1122.4717 0.11534 4.3271E-05 -1.1327 -0.00042496 -1.0174 -0.00038169 375.16383571017667 36.744 0.13566 34.396 34.311 34.447 -2.3479 0.087664 0.00069078 NaN 5.4027 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 399560 + 16017 19524 10460 10463 -0.08463761860707564 GEEAEYTVEP 10 Unmodified _GEEAEYTVEP_ 0 0 0 REV__ENST00000471434.1_1_17:73897061-73897597:-|nuORF REV__ENST00000471434.1_1_17:73897061-73897597:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 375.16451 1122.4717 -0.42254 -0.00015852 -1.6456 -0.00061737 -2.0681 -0.00077589 375.49809767606837 36.672 0.39014 34.334 34.027 34.417 -2.3375 0.025671 0.00011355 NaN 5.4027 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 219850 + 16018 19524 10460 10463 -0.08463761860707564 GEEDEKVLY 9 Unmodified _GEEDEKVLY_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2586059570312 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 122.42 1 117.88 117.38 118.38 -4.5476 0 0 0 0.23508 1 24133 24133 12.532 3.1841 1 16019 4961 10461 10464 16123 16123 -0.03950867618414122 GEEEEESDY 9 Unmodified _GEEEEESDY_ 0 0 0 REV__ENSG00000169925|ENST00000303407|BRD3 REV__ENSG00000169925|ENST00000303407|BRD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7827758789062 2 543.690923 1085.36729 NaN NaN NaN NaN NaN NaN NaN 87.282 1 87.282 86.782 87.782 0 0 0 0 0.23508 1 17037 17037 4.756 0 1 + 16020 18129 10462 10465 16124 16124 -0.1719750840807137 GEEEETIN 8 Unmodified _GEEEETIN_ 0 0 0 ENSG00000115827|ENST00000375255|DCAF17;nc|ENSG00000115827|Q5H9S7-2|DCAF17;ENST00000498486.1_1_2:172336502-172337621:+|nuORF ENSG00000115827|ENST00000375255|DCAF17 ENSG00000115827|ENST00000375255|DCAF17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23681640625 2 460.695812 919.377071 NaN NaN NaN NaN NaN NaN NaN 157.53 1 152.74 152.24 153.24 -4.7885 0 0 0 0.23487 1 31330 31330 0.62683 0 1 16021 2887 10463 10466 16125 16125 -0.08584275612031433 GEEEFKFPP 9 Unmodified _GEEEFKFPP_ 0 0 0 DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant;nc|ENSG00000079785|Q92499-3|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1 DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2595825195312 2 540.25584 1078.49713 0.32361 0.00017483 -0.43435 -0.00023466 -0.11073 -5.9824E-05 540.255629856922 125.41 1.1002 120.81 120.51 121.61 -4.5984 56 30 3 0 0 0 0.55979 1 24704 24704 15.847 4.2069 1 2006400 16022 797 10464 10467 16126 16126 -0.03898242547620612 GEEEFKFPP 9 Unmodified _GEEEFKFPP_ 0 0 0 DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant;nc|ENSG00000079785|Q92499-3|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1 DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.25584 1078.49713 0.40723 0.00022001 0.5281 0.00028531 0.93533 0.00050532 540.2556848707325 125.82 0.73341 121.05 120.65 121.39 -4.7681 0.22638 0.00077826 NaN 15.847 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1793800 16023 797 10464 10467 -0.03898242547620612 GEEEFKFPP 9 Unmodified _GEEEFKFPP_ 0 0 0 DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant;nc|ENSG00000079785|Q92499-3|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1 DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.25584 1078.49713 0.29744 0.00016069 -0.16337 -8.8264E-05 0.13406 7.2427E-05 540.2557564591436 125.27 1.5176 120.62 119.96 121.48 -4.6495 -0.20659 3.1108E-05 NaN 15.847 67 42 2 NaN NaN NaN NaN 0 NaN NaN 0 2243200 16024 797 10464 10467 -0.03898242547620612 GEEEILIYI 9 Unmodified _GEEEILIYI_ 0 0 0 ENST00000460696.1_1_1:5923327-5923483:-|nuORF;ENST00000489180.6_1_1:5923327-5936049:-|nuORF;ENSG00000131697|ENST00000378156|NPHP4 ENST00000460696.1_1_1:5923327-5923483:-|nuORF ENST00000460696.1_1_1:5923327-5923483:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21112060546875 3 360.193741 1077.55939 -0.0012412 -4.4709E-07 -3.0326 -0.0010923 -3.0338 -0.0010928 360.52633837570113 43.098 0.16813 43.098 42.987 43.155 0 7 4 2 0 0 0 0.68708 1 8064 8064 7.1017 0.89594 1 305370 16025 3688 10465 10468 16127 16127 0.023714838007208527 GEEENRGVVY 10 Unmodified _GEEENRGVVY_ 0 0 0 ITGAX|p.A552V|1|0.38|ENSG00000140678|chr16:31363319-31363319|C/T|missense_variant ITGAX|p.A552V|1|0.38|ENSG00000140678|chr16:31363319-31363319|C/T|missense_variant ITGAX|p.A552V|1|0.38|ENSG00000140678|chr16:31363319-31363319|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3131713867188 2 576.27001 1150.52547 0.23876 0.00013759 0.0082153 4.7343E-06 0.24697 0.00014232 576.2698918853392 18.182 0.31243 18.182 18.023 18.335 0 18 8 4 0 0 0 0.89145 1 2936 2936 4.897 0 1 2920700 16026 11963 10466 10469 16128 16128 -0.04377544638305153 GEEILNSNV 9 Unmodified _GEEILNSNV_ 0 0 0 REV__tr|U7SFZ0|U7SFZ0_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02288PE=3SV=1 REV__tr|U7SFZ0|U7SFZ0_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02288PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 487.7335510253906 2 487.743096 973.47164 0.038926 1.8986E-05 0.35139 0.00017139 0.39031 0.00019037 487.74315996272026 69.665 0.74047 66.485 66.119 66.859 -3.1796 30 20 2 0 0 0 0.15889 1 13539 13539 22.736 0 1 2518100 + 16027 24866 10467 10470 16129 16129 -0.016157170700353163 GEEILNSNV 9 Unmodified _GEEILNSNV_ 0 0 0 REV__tr|U7SFZ0|U7SFZ0_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02288PE=3SV=1 REV__tr|U7SFZ0|U7SFZ0_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02288PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 487.743096 973.47164 -0.15841 -7.7263E-05 0.55412 0.00027027 0.39571 0.000193 487.74302083259846 66.493 0.5934 66.493 66.172 66.765 0 0.003799 0.00012687 NaN 22.736 33 16 4 NaN NaN NaN NaN 0 NaN NaN 0 3564800 + 16028 24866 10467 10470 -0.016157170700353163 GEEILNSNV 9 Unmodified _GEEILNSNV_ 0 0 0 REV__tr|U7SFZ0|U7SFZ0_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02288PE=3SV=1 REV__tr|U7SFZ0|U7SFZ0_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02288PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 487.743096 973.47164 0.038926 1.8986E-05 0.35139 0.00017139 0.39031 0.00019037 487.74315996272026 69.665 0.74047 66.485 66.119 66.859 -3.1796 -0.003799 -7.0892E-05 NaN 22.736 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2518100 + 16029 24866 10467 10470 -0.016157170700353163 GEETEMTSP 9 Unmodified _GEETEMTSP_ 0 0 0 REV__TSSK1B|p.Q359Nfs*43|1|0.68|ENSG00000212122|chr5:113433765-113433765|G/-|frameshift_variant REV__TSSK1B|p.Q359Nfs*43|1|0.68|ENSG00000212122|chr5:113433765-113433765|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2648620605469 2 490.697497 979.380442 0.023769 1.1663E-05 4.0283 0.0019767 4.052 0.0019883 490.6985703385073 79.83 0.77461 76.025 75.439 76.214 -3.8048 29 21 2 0 0 0 0.81703 1 15083 15083 6.2058 0 1 1693400 + 16030 19629 10468 10471 16130 16130 -0.11007348829662078 GEFFSVLY 8 Unmodified _GEFFSVLY_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-3|VPS13A REV__nc|ENSG00000197969|Q96RL7-3|VPS13A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2364501953125 2 481.236919 960.459284 0.0087606 4.2159E-06 -1.0362 -0.00049863 -1.0274 -0.00049442 481.23658691093493 85.547 0.95307 85.547 84.942 85.895 0 41 26 3 0 0 0 0.70613 1 16728 16728 13.508 0.97634 1 1673900 + 16031 19379 10469 10472 16131 16131 -0.02252708742435061 GEFFSVLY 8 Unmodified _GEFFSVLY_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-3|VPS13A REV__nc|ENSG00000197969|Q96RL7-3|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23712158203125 2 481.236919 960.459284 NaN NaN NaN NaN NaN NaN NaN 27.612 1 25.856 25.356 26.356 -1.7552 0 0 0 0.19492 1 4626 4626 26.341 6.9023 1 + 16032 19379 10469 10472 16132 16132 -0.02252708742435061 GEFFSVLY 8 Unmodified _GEFFSVLY_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-3|VPS13A REV__nc|ENSG00000197969|Q96RL7-3|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2431945800781 2 481.236919 960.459284 NaN NaN NaN NaN NaN NaN NaN 114.39 1 109.84 109.34 110.34 -4.555 0 0 0 0.2343 1 21965 21965 0.12286 0 1 + 16033 19379 10469 10472 16133 16133 -0.02252708742435061 GEFFSVLY 8 Unmodified _GEFFSVLY_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-3|VPS13A REV__nc|ENSG00000197969|Q96RL7-3|VPS13A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24517822265625 2 481.236919 960.459284 0.064178 3.0885E-05 -1.4895 -0.00071679 -1.4253 -0.0006859 481.23634846735433 76.915 0.63784 73.256 72.97 73.607 -3.6588 44 17 3 0 0 0 8448 1 14597 14597 0.12286 0.058877 1 5610500 + 16034 19379 10469 10472 16134 16134 -0.02252708742435061 GEFKAYCY 8 Unmodified _GEFKAYCY_ 0 0 0 REV__ENST00000560820.1_1_15:48729911-48737600:-|nuORF REV__ENST00000560820.1_1_15:48729911-48737600:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2212219238281 2 490.712753 979.410954 0.022446 1.1015E-05 -0.78024 -0.00038288 -0.7578 -0.00037186 490.7123425604171 33.987 0.41477 31.67 31.461 31.876 -2.3175 17 11 2 0 0 0 0.89646 1 6237 6237 0.62683 0 1 1120800 + 16035 17828 10470 10473 16135 16135 -0.07957525653989705 GEFRYTNPP 9 Unmodified _GEFRYTNPP_ 0 0 0 REV__ENSG00000140443|ENST00000650285|IGF1R REV__ENSG00000140443|ENST00000650285|IGF1R MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2650756835938 2 540.759081 1079.50361 0.25656 0.00013874 0.33771 0.00018262 0.59427 0.00032136 540.7569995404325 127.97 0.44989 123.15 122.86 123.31 -4.817 16 12 2 0 0 0 0.62102 1 24526 24526 11.64 0 1 1379400 + 16036 16574 10471 10474 16136 16136 -0.0329630459625605 GEFSITYKP 9 Unmodified _GEFSITYKP_ 0 0 0 ENSG00000115268|ENST00000592588|RPS15;ENST00000586096.3_1_19:1440314-1440458:+|nuORF;ENST00000522454.1_1_5:164028010-164028223:-|nuORF ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.261474609375 2 521.266207 1040.51786 0.56204 0.00029297 -0.43205 -0.00022521 0.12999 6.7761E-05 521.2658942731618 100.52 1.1116 100.52 99.934 101.05 0 97 31 4 0 0 0 0.24263 4 19639 19639;19688;19710;19798 34.932 17.819 1 23983000 16037 2837 10472 10475 16137;16138;16139;16140 16137 -0.0007765216796542518 GEFSITYKP 9 Unmodified _GEFSITYKP_ 0 0 0 ENSG00000115268|ENST00000592588|RPS15;ENST00000586096.3_1_19:1440314-1440458:+|nuORF;ENST00000522454.1_1_5:164028010-164028223:-|nuORF ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2816772460938 2 521.266207 1040.51786 -0.45069 -0.00023493 0.79126 0.00041246 0.34057 0.00017753 521.2665549602184 104.75 1.3224 100.53 99.924 101.25 -4.2183 112 37 4 0 0 0 0.17734 4 20644 20629;20636;20644;20681 40.239 19.786 1 21065000 16038 2837 10472 10475 16141;16142;16143;16144 16143 -0.0007765216796542518 GEFSITYKP 9 Unmodified _GEFSITYKP_ 0 0 0 ENSG00000115268|ENST00000592588|RPS15;ENST00000586096.3_1_19:1440314-1440458:+|nuORF;ENST00000522454.1_1_5:164028010-164028223:-|nuORF ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2689819335938 2 521.266207 1040.51786 -0.57599 -0.00030025 0.84859 0.00044234 0.2726 0.0001421 521.2665672144208 104.81 1.3498 100.47 99.833 101.18 -4.346 105 38 4 0 0 0 0.24263 3 20087 20087;20139;20153 34.932 15.675 1 24103000 16039 2837 10472 10475 16145;16146;16147 16145 -0.0007765216796542518 GEFSITYKP 9 Unmodified _GEFSITYKP_ 0 0 0 ENSG00000115268|ENST00000592588|RPS15;ENST00000586096.3_1_19:1440314-1440458:+|nuORF;ENST00000522454.1_1_5:164028010-164028223:-|nuORF ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2695922851562 2 521.266207 1040.51786 0.78038 0.00040679 -0.50736 -0.00026447 0.27302 0.00014232 521.2658732280837 104.51 1.3502 100.46 99.735 101.08 -4.0543 103 37 4 0 0 0 0.17734 2 20133 20110;20133 40.239 19.368 1 18753000 16040 2837 10472 10475 16148;16149 16149 -0.0007765216796542518 GEGALLAADVY 11 Unmodified _GEGALLAADVY_ 0 0 0 MTHFSD|p.P303L|1|0.33|ENSG00000103248|chr16:86532255-86532255|G/A|missense_variant MTHFSD|p.P303L|1|0.33|ENSG00000103248|chr16:86532255-86532255|G/A|missense_variant MTHFSD|p.P303L|1|0.33|ENSG00000103248|chr16:86532255-86532255|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2785034179688 2 539.774396 1077.53424 0.31641 0.00017079 -0.063979 -3.4534E-05 0.25243 0.00013626 539.7742989489119 153.29 0.81593 148.52 148.08 148.9 -4.7684 51 22 4 0 0 0 0.68099 1 30431 30431 13.042 3.6593 1 12274000 16041 12169 10473 10476 16150 16150 -0.001425710018565951 GEGAPPESVL 10 Unmodified _GEGAPPESVL_ 0 0 0 ENST00000537595.1_10:102122289-102122870:+|nuORF ENST00000537595.1_10:102122289-102122870:+|nuORF ENST00000537595.1_10:102122289-102122870:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73828125 2 478.24019 954.465826 -0.30093 -0.00014392 -2.0738 -0.00099178 -2.3747 -0.0011357 478.2402610439546 57.202 1.0433 57.202 56.536 57.58 0 48 29 2 0 0 0 0.47611 1 10804 10804 6.6304 0 1 3565000 16042 11038 10474 10477 16151 16151 -0.013228155817046172 GEGAQLSWA 9 Unmodified _GEGAQLSWA_ 0 0 0 REV__ENST00000409887.3_1_17:16350239-16351253:-|nuORF REV__ENST00000409887.3_1_17:16350239-16351253:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2472229003906 2 459.719424 917.424296 0.0072823 3.3478E-06 0.31852 0.00014643 0.32581 0.00014978 459.7195747710796 24.956 2.4611 23.422 22.817 25.279 -1.5342 217 70 4 0 0 0 0.5059 1 4425 4425 19.257 3.4098 1 88409000 + 16043 21419 10475 10478 16152 16152 -0.037719515503795265 GEGEQLQATI 10 Unmodified _GEGEQLQATI_ 0 0 0 REV__PTH2R|p.L281Ifs*27|1|0.05|ENSG00000144407|chr2:208444874-208444875|-/ATATTAGAACACT|frameshift_variant REV__PTH2R|p.L281Ifs*27|1|0.05|ENSG00000144407|chr2:208444874-208444875|-/ATATTAGAACACT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6792602539062 2 523.261653 1044.50875 -0.12877 -6.738E-05 -1.3538 -0.00070839 -1.4826 -0.00077577 523.26122099964 63.856 0.8362 63.856 63.296 64.132 0 34 23 2 0 0 0 0.68509 1 12255 12255 15.248 0 1 2766000 + 16044 16782 10476 10479 16153 16153 -0.011720455242766548 GEGFRWMAQY 10 Unmodified _GEGFRWMAQY_ 0 0 0 ENSG00000152700|ENST00000402673|SAR1B ENSG00000152700|ENST00000402673|SAR1B ENSG00000152700|ENST00000402673|SAR1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.781982421875 2 622.77949 1243.54443 NaN NaN NaN NaN NaN NaN NaN 25.568 1 23.934 23.434 24.434 -1.6347 0 0 0 0.22588 1 4209 4209 7.2892 2.96 1 16045 4938 10477 10480 16154 16154 -0.06760286548274053 GEGIFRERD 9 Unmodified _GEGIFRERD_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2716674804688 2 539.767437 1077.52032 0.16886 9.1147E-05 -0.022247 -1.2008E-05 0.14662 7.9139E-05 539.7674176852238 15.182 1.3917 15.182 14.807 16.199 0 147 39 5 0 0 0 0.35556 1 2328 2328 12.241 0 1 22003000 16046 3432 10478 10481 16155 16155 -0.015338037102765156 GEGRRLKP 8 Unmodified _GEGRRLKP_ 0 0 0 ENST00000512660.1_1_5:176936187-176936779:-|nuORF;ENST00000502380.1_1_5:176936187-176937359:-|nuORF ENST00000512660.1_1_5:176936187-176936779:-|nuORF ENST00000512660.1_1_5:176936187-176936779:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 457.2820739746094 2 456.772326 911.530098 0.31142 0.00014225 0.28271 0.00012913 0.59413 0.00027138 456.77241841009607 147.21 0.86897 142.21 141.82 142.69 -5 46 24 3 0 0 0 8448 1 28538 28538 0.25148 0 1 4485400 16047 10624 10479 10482 16156 16156 0.07079429085740685 GEGSAKRSQ 9 Unmodified _GEGSAKRSQ_ 0 0 0 ENSG00000178718|ENST00000322177|RPP25 ENSG00000178718|ENST00000322177|RPP25 ENSG00000178718|ENST00000322177|RPP25 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2316589355469 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 18.621 1 17.31 16.81 17.81 -1.3109 0 0 0 0.23277 1 3034 3034 13.906 4.5229 1 16048 6590 10480 10483 16157 16157 -0.010580482901445976 GEGSEKEGPA 10 Unmodified _GEGSEKEGPA_ 0 0 0 REV__ENSG00000174429|ENST00000311955|ABRA REV__ENSG00000174429|ENST00000311955|ABRA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2450866699219 2 480.717079 959.419604 0.11242 5.4042E-05 0.30771 0.00014792 0.42013 0.00020196 480.7172897614131 37.316 0.65387 34.968 34.655 35.308 -2.3479 28 18 2 0 0 0 0.79872 1 6658 6658 13.906 8.1742 1 696520 + 16049 18413 10481 10484 16158 16158 -0.06172880483802601 GEGVFEGVSV 10 Unmodified _GEGVFEGVSV_ 0 0 0 REV__nc|ENSG00000124214|O95793-2|STAU1 REV__nc|ENSG00000124214|O95793-2|STAU1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2652893066406 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 96.613 1 92.693 92.193 93.193 -3.9194 0 0 0 0.22544 1 18537 18537 19.257 3.4098 1 + 16050 15764 10482 10485 16159 16159 -0.024268155817026127 GEHDKMVAA 9 Unmodified _GEHDKMVAA_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1;nc|ENSG00000160410|Q8TBC3-2|SHKBP1 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7289123535156 2 479.226559 956.438566 -0.12279 -5.8846E-05 0.10799 5.1753E-05 -0.014802 -7.0934E-06 479.2266196483939 17.374 0.52558 17.374 17.205 17.731 0 31 14 3 0 0 0 0.14943 1 2767 2767 61.602 29.296 1 27053000 16051 5252 10483 10486 16160 16160 -0.041396223937454124 GEHDKMVAA 9 Unmodified _GEHDKMVAA_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1;nc|ENSG00000160410|Q8TBC3-2|SHKBP1 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7423400878906 2 479.226559 956.438566 -0.015453 -7.4055E-06 -0.069306 -3.3213E-05 -0.084759 -4.0619E-05 479.2265482958076 18.574 0.44793 17.263 17.073 17.521 -1.3109 30 12 3 0 0 0 0.12694 1 3002 3002 51.415 5.3943 1 16969000 16052 5252 10483 10486 16161 16161 -0.041396223937454124 GEHDKMVAA 9 Unmodified _GEHDKMVAA_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1;nc|ENSG00000160410|Q8TBC3-2|SHKBP1 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7211608886719 2 479.226559 956.438566 -0.36899 -0.00017683 0.3417 0.00016375 -0.027293 -1.3079E-05 479.2267873048176 18.521 0.49141 17.196 16.978 17.469 -1.3251 32 13 4 0 0 0 0.091344 1 2790 2790 76.825 12.588 1 7691400 16053 5252 10483 10486 16162 16162 -0.041396223937454124 GEHDKMVAA 9 Unmodified _GEHDKMVAA_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1;nc|ENSG00000160410|Q8TBC3-2|SHKBP1 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7423095703125 2 479.226559 956.438566 -1.1406 -0.00054659 1.1162 0.00053492 -0.024348 -1.1668E-05 479.22709799333944 18.698 0.52939 17.176 17.012 17.542 -1.5224 29 14 3 0 0 0 0.11519 1 2773 2773 61.602 0 1 7035600 16054 5252 10483 10486 16163 16163 -0.041396223937454124 GEHEKMHDL 9 Unmodified _GEHEKMHDL_ 0 0 0 REV__ENSG00000168813|ENST00000355898|ZNF507 REV__ENSG00000168813|ENST00000355898|ZNF507 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7911987304688 2 548.248023 1094.48149 0.62556 0.00034296 0.93094 0.00051038 1.5565 0.00085335 548.2469430894454 120.11 0.10235 115.47 115.42 115.52 -4.645 4 2 2 0 0 0 0.8319 1 23044 23044 1.8442 0 1 833110 + 16055 18059 10484 10487 16164 16164 -0.06196852336302072 GEHHPSRPVA 10 Unmodified _GEHHPSRPVA_ 0 0 0 REV__ENST00000587566.5_1_19:45582622-45767951:+|nuORF REV__ENST00000587566.5_1_19:45582622-45767951:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7752075195312 2 543.775597 1085.53664 -1.3342 -0.00072548 0.16101 8.7552E-05 -1.1731 -0.00063793 543.7756264973518 16.675 0.23549 15.321 15.237 15.472 -1.3534 11 6 2 0 0 0 0.72988 1 2373 2373 8.1555 0.54658 1 567080 + 16056 23277 10485 10488 16165 16165 -0.002706777535195215 GEHPLSFAA 9 Unmodified _GEHPLSFAA_ 0 0 0 nc|ENSG00000127412|Q9NQA5-2|TRPV5;TRPV5|p.P424Hfs*15|1|0.17|ENSG00000127412|chr7:142915324-142915324|C/-|frameshift_variant;ENSG00000127412|ENST00000265310|TRPV5;ENSG00000165125|ENST00000359396|TRPV6 nc|ENSG00000127412|Q9NQA5-2|TRPV5;ENSG00000165125|ENST00000359396|TRPV6 nc|ENSG00000127412|Q9NQA5-2|TRPV5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2587585449219 2 464.729792 927.445031 -0.048053 -2.2332E-05 0.1067 4.9585E-05 0.058643 2.7253E-05 464.7297312876964 81.037 0.48258 77.479 77.274 77.757 -3.557 22 13 2 0 0 0 0.25702 1 15857 15857 34.102 10.954 1 1067200 16057 3473;5601 10486 10489 16166 16166 -0.02159361170720331 GEHPLSFAA 9 Unmodified _GEHPLSFAA_ 0 0 0 nc|ENSG00000127412|Q9NQA5-2|TRPV5;TRPV5|p.P424Hfs*15|1|0.17|ENSG00000127412|chr7:142915324-142915324|C/-|frameshift_variant;ENSG00000127412|ENST00000265310|TRPV5;ENSG00000165125|ENST00000359396|TRPV6 nc|ENSG00000127412|Q9NQA5-2|TRPV5;ENSG00000165125|ENST00000359396|TRPV6 nc|ENSG00000127412|Q9NQA5-2|TRPV5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.729792 927.445031 0.46553 0.00021635 -0.32366 -0.00015042 0.14187 6.5932E-05 464.72957703086564 77.694 0.6568 77.694 77.253 77.91 0 0.10706 -0.00016599 NaN 34.102 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1364700 16058 3473;5601 10486 10489 -0.02159361170720331 GEHRWLTG 8 Unmodified _GEHRWLTG_ 0 0 0 ENST00000497473.5_1_2:9614726-9618367:+|nuORF ENST00000497473.5_1_2:9614726-9618367:+|nuORF ENST00000497473.5_1_2:9614726-9618367:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7207336425781 2 478.240858 954.467164 -0.14586 -6.9755E-05 0.29477 0.00014097 0.14891 7.1213E-05 478.24088495493004 17.322 0.41682 17.322 17.1 17.517 0 25 11 4 0 0 0 0.58432 1 2757 2757 23.148 23.148 1 3394100 16059 10591 10487 10490 16167 16167 -0.011891367022826671 GEIILHLY 8 Unmodified _GEIILHLY_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7211608886719 2 479.273835 956.533118 0.11566 5.5431E-05 -0.55875 -0.00026779 -0.44309 -0.00021236 479.27367795144477 148.88 0.68472 144.17 143.83 144.51 -4.7095 35 18 3 0 0 0 0.67678 1 29614 29614 34.187 13.316 1 5349900 16060 26528 10488 10491 16168 16168 0.053112594198864826 GEIILHLY 8 Unmodified _GEIILHLY_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.273835 956.533118 -0.050889 -2.439E-05 -0.3438 -0.00016477 -0.39469 -0.00018916 479.2737442425245 144.35 0.65158 144.35 144.1 144.75 0 0.15409 0.00024891 NaN 34.187 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 4043300 16061 26528 10488 10491 0.053112594198864826 GEIILHLY 8 Unmodified _GEIILHLY_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.273835 956.533118 0.131 6.2785E-05 -0.46027 -0.0002206 -0.32927 -0.00015781 479.2737566436163 149.35 0.66513 144.15 143.84 144.5 -5.1994 -0.048755 0.00013727 NaN 34.187 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2364500 16062 26528 10488 10491 0.053112594198864826 GEIILHLY 8 Unmodified _GEIILHLY_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 479.273835 956.533118 0.32739 0.00015691 -0.99354 -0.00047618 -0.66614 -0.00031927 479.2734707199963 149.24 0.67767 144.12 143.79 144.46 -5.1204 -0.075959 -0.00037389 NaN 34.187 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3018200 16063 26528 10488 10491 0.053112594198864826 GEIRGFETA 9 Unmodified _GEIRGFETA_ 0 0 0 ENSG00000109586|ENST00000265000|GALNT7 ENSG00000109586|ENST00000265000|GALNT7 ENSG00000109586|ENST00000265000|GALNT7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2715759277344 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 58.202 1 58.202 57.702 58.702 0 0 0 0 0.19687 1 11135 11135 8.1555 3.2585 1 16064 2533 10489 10492 16169 16169 -0.013039934875791914 GEITEREK 8 Unmodified _GEITEREK_ 0 0 0 ITIH5|p.K117T|1|0.07|ENSG00000123243|chr10:7640805-7640805|T/G|missense_variant;ITIH5|p.T499Pfs*43|1|0.35|ENSG00000123243|chr10:7576937-7576937|G/-|frameshift_variant;ITIH5|p.S493Afs*49|1|0.16|ENSG00000123243|chr10:7576955-7576955|G/-|frameshift_variant;ITIH5|p.L690*|1|0.49|ENSG00000123243|chr10:7569749-7569749|G/-|frameshift_variant;nc|ENSG00000123243|Q86UX2-2|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5 ITIH5|p.K117T|1|0.07|ENSG00000123243|chr10:7640805-7640805|T/G|missense_variant ITIH5|p.K117T|1|0.07|ENSG00000123243|chr10:7640805-7640805|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2476806640625 2 481.251089 960.487624 0.039845 1.9176E-05 -1.0501 -0.00050534 -1.0102 -0.00048616 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 8448 1 7415 7415 14.838 12.207 1 69706000 16065 3259 10490 10493 16170 16170 0.005799891668630153 GEITKRGVA 9 Unmodified _GEITKRGVA_ 0 0 0 REV__nc|ENSG00000243943|Q96ME7-2|ZNF512 REV__nc|ENSG00000243943|Q96ME7-2|ZNF512 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25860595703125 2 465.771991 929.529429 -1.0404 -0.0004846 0.78157 0.00036403 -0.25886 -0.00012057 465.77235418754475 19.251 0.55069 17.615 17.395 17.946 -1.6351 38 15 4 0 0 0 0.47479 1 2903 2903 30.637 0 1 12787000 + 16066 19805 10491 10494 16171 16171 0.061845896460340555 GEKELLEKA 9 Unmodified _GEKELLEKA_ 0 0 0 REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1 REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.53076171875 3 339.525602 1015.55498 -0.38498 -0.00013071 0.37619 0.00012773 -0.0087946 -2.986E-06 339.5255990604226 35.759 0.48795 33.482 33.316 33.804 -2.2766 19 13 2 0 0 0 0.10537 1 6313 6313 29.082 0 1 640880 + 16067 24912 10492 10495 16172 16172 0.047820193778079556 GEKELLEKA 9 Unmodified _GEKELLEKA_ 0 0 0 REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1 REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 339.525602 1015.55498 0.14806 5.027E-05 -0.27559 -9.3571E-05 -0.12753 -4.33E-05 339.5254464259297 35.772 0.51729 33.519 33.301 33.818 -2.2527 0.018462 -0.0002852 NaN 29.082 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 855800 + 16068 24912 10492 10495 0.047820193778079556 GEKELLEKA 9 Unmodified _GEKELLEKA_ 0 0 0 REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1 REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 339.525602 1015.55498 -0.38498 -0.00013071 0.37619 0.00012773 -0.0087946 -2.986E-06 339.5255990604226 35.759 0.48795 33.482 33.316 33.804 -2.2766 -0.018462 0.00037869 NaN 29.082 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 640880 + 16069 24912 10492 10495 0.047820193778079556 GEKGAKGEPG 10 Unmodified _GEKGAKGEPG_ 0 0 0 ENSG00000080573|ENST00000264828|COL5A3 ENSG00000080573|ENST00000264828|COL5A3 ENSG00000080573|ENST00000264828|COL5A3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2385559082031 2 465.237981 928.461409 0.096713 4.4994E-05 -3.5174 -0.0016364 -3.4207 -0.0015914 465.23806025161383 19.793 0.33991 19.793 19.588 19.928 0 15 9 2 0 0 0 0.6817 1 3257 3257 13.042 0.51092 1 448120 16070 1616 10493 10496 16173 16173 -0.005682800046088232 GEKGAKGEPG 10 Unmodified _GEKGAKGEPG_ 0 0 0 ENSG00000080573|ENST00000264828|COL5A3 ENSG00000080573|ENST00000264828|COL5A3 ENSG00000080573|ENST00000264828|COL5A3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2384948730469 2 465.237981 928.461409 -0.72848 -0.00033892 -2.4355 -0.0011331 -3.1639 -0.001472 465.23826547278077 21.345 0.24351 19.624 19.497 19.74 -1.7211 11 6 2 0 0 0 0.5575 1 3327 3327 21.537 1.0834 1 269840 16071 1616 10493 10496 16174 16174 -0.005682800046088232 GEKLKEIY 8 Unmodified _GEKLKEIY_ 0 0 0 REV__nc|ENSG00000102098|Q9UQR0-2|SCML2 REV__nc|ENSG00000102098|Q9UQR0-2|SCML2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2751159667969 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 93.115 1 88.971 88.471 89.471 -4.1435 0 0 0 0.21486 1 17745 17745 5.7604 0 1 + 16072 14821 10494 10497 16175 16175 0.048469382116991255 GEKVFEEEI 9 Unmodified _GEKVFEEEI_ 0 0 0 nc|ENSG00000172426|Q9H1X1-2|RSPH9;ENSG00000172426|ENST00000372163|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.269287109375 2 540.266404 1078.51826 0.1239 6.6937E-05 0.21124 0.00011413 0.33514 0.00018106 540.2663952552869 106.53 0.85987 102.15 101.68 102.54 -4.3764 80 24 4 0 0 0 0.061384 1 20412 20412 18.614 9.701 1 24537000 16073 12464 10495 10498 16176 16176 -0.017862772387616133 GELHKIICRQL 11 Unmodified _GELHKIICRQL_ 0 0 0 REV__ENSG00000068654|ENST00000263857|POLR1A REV__ENSG00000068654|ENST00000263857|POLR1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21612548828125 3 437.251818 1308.73363 NaN NaN NaN NaN NaN NaN NaN 111.17 1 106.94 106.44 107.44 -4.2289 0 0 0 0.23452 1 21394 21394 4.7159 0.30977 1 + 16074 14230 10496 10499 16177 16177 0.09160785745052635 GELLERERERQ 11 Unmodified _GELLERERERQ_ 0 0 0 SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant;ENSG00000174705|ENST00000311601|SH3PXD2B SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 707.8856811523438 2 707.873496 1413.73244 NaN NaN NaN NaN NaN NaN NaN 170.22 1 165.34 164.84 165.84 -4.873 0 0 0 0.22632 1 33673 33673 5.4027 5.3968 1 16075 6362 10497 10500 16178 16178 0.04212242909829911 GELREQSP 8 Unmodified _GELREQSP_ 0 0 0 ENST00000303221.9_1_5:49724015-49737091:-|nuORF ENST00000303221.9_1_5:49724015-49737091:-|nuORF ENST00000303221.9_1_5:49724015-49737091:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2243347167969 2 458.230156 914.445759 0.51651 0.00023668 -0.33757 -0.00015469 0.17894 8.1996E-05 458.2299994951408 29.757 0.48799 27.683 27.413 27.901 -2.0743 33 13 4 0 0 0 8448 1 5027 5027 3.2813 0 1 4395500 16076 8584 10498 10501 16179 16179 -0.0148856652166387 GELSCNGCHP 10 Unmodified _GELSCNGCHP_ 0 0 0 REV__ENST00000309775.8_1_11:65233585-65233747:+|nuORF REV__ENST00000309775.8_1_11:65233585-65233747:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.4596862792969 3 339.468993 1015.38515 NaN NaN NaN NaN NaN NaN NaN 36.825 1 36.825 36.325 37.325 0 0 0 0 2.8426 1 6797 6797 6.6304 1.7334 1 + 16077 20470 10499 10502 16180 16180 -0.12192743167906883 GELVLEPY 8 Unmodified _GELVLEPY_ 0 0 0 REV__PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant REV__PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24139404296875 2 460.242201 918.469849 NaN NaN NaN NaN NaN NaN NaN 134.25 1 129.61 129.11 130.11 -4.6399 0 0 0 0.17894 1 26472 26472 32.117 7.4431 1 + 16078 19839 10500 10503 16181 16181 0.0073527391199377234 GELVNAAR 8 Unmodified _GELVNAAR_ 0 0 0 PPAT|p.K178Nfs*35|1|0.04|ENSG00000128059|chr4:56403157-56403167|TGGGTGCTTCC/-|frameshift_variant;PPAT|p.F373Lfs*16|1|0.1|ENSG00000128059|chr4:56399296-56399296|A/-|frameshift_variant;ENSG00000128059|ENST00000264220|PPAT PPAT|p.K178Nfs*35|1|0.04|ENSG00000128059|chr4:56403157-56403167|TGGGTGCTTCC/-|frameshift_variant PPAT|p.K178Nfs*35|1|0.04|ENSG00000128059|chr4:56403157-56403167|TGGGTGCTTCC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.24896240234375 2 415.229959 828.445365 NaN NaN NaN NaN NaN NaN NaN 30.732 1 28.615 28.115 29.115 -2.1167 0 0 0 0.21452 1 5561 5561 13.508 0.97634 1 16079 3508 10501 10504 16182 16182 0.02428058549128309 GENGCCGC 8 Unmodified _GENGCCGC_ 0 0 0 REV__ENSG00000169903|ENST00000305354|TM4SF4 REV__ENSG00000169903|ENST00000305354|TM4SF4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.377197265625 1 742.195306 741.18803 0.15287 0.00011346 -0.051985 -3.8583E-05 0.10089 7.4878E-05 742.1969990963961 58.45 0.7269 58.45 58.312 59.039 0 28 20 2 0 0 0 1.028 1 11193 11193 0.79363 0.26887 1 1937400 + 16080 18127 10502 10505 16183 16183 -0.1929166598234815 GENPHPITP 9 Unmodified _GENPHPITP_ 0 0 0 ENSG00000160117|ENST00000404085|ANKLE1 ENSG00000160117|ENST00000404085|ANKLE1 ENSG00000160117|ENST00000404085|ANKLE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2409362792969 2 481.240524 960.466495 0.010224 4.9203E-06 0.36844 0.00017731 0.37867 0.00018223 481.2405605685041 35.432 0.55369 35.432 35.203 35.757 0 24 15 2 0 0 0 0.29284 1 6501 6501 32.037 9.3012 1 946150 16081 5230 10503 10506 16184 16184 -0.015319761420073519 GENPHPITP 9 Unmodified _GENPHPITP_ 0 0 0 ENSG00000160117|ENST00000404085|ANKLE1 ENSG00000160117|ENST00000404085|ANKLE1 ENSG00000160117|ENST00000404085|ANKLE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2406311035156 2 481.240524 960.466495 0.10467 5.0371E-05 -0.07043 -3.3894E-05 0.03424 1.6478E-05 481.2404417129428 37.761 0.66107 35.413 35.063 35.724 -2.3479 29 18 2 0 0 0 0.13904 2 6712 6664;6712 45.74 23.004 1 1202000 16082 5230 10503 10506 16185;16186 16186 -0.015319761420073519 GENPHPITP 9 Unmodified _GENPHPITP_ 0 0 0 ENSG00000160117|ENST00000404085|ANKLE1 ENSG00000160117|ENST00000404085|ANKLE1 ENSG00000160117|ENST00000404085|ANKLE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2409973144531 2 481.240524 960.466495 0.1457 7.0117E-05 -0.12138 -5.8415E-05 0.024316 1.1702E-05 481.2402881876969 37.782 0.55299 35.444 35.153 35.706 -2.3375 28 15 3 0 0 0 0.17734 4 6662 6639;6656;6662;6729 40.239 19.786 1 723450 16083 5230 10503 10506 16187;16188;16189;16190 16189 -0.015319761420073519 GENSLIVSP 9 Unmodified _GENSLIVSP_ 0 0 0 ENSG00000162757|ENST00000294811|C1orf74 ENSG00000162757|ENST00000294811|C1orf74 ENSG00000162757|ENST00000294811|C1orf74 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2302551269531 2 458.242732 914.470912 0.064332 2.948E-05 0.095652 4.3832E-05 0.15998 7.3312E-05 458.2427144213807 96.209 1.3157 91.974 91.535 92.851 -4.2348 75 37 3 0 0 0 0.45972 1 18467 18467 8.1555 3.2585 1 5732800 16084 5364 10504 10507 16191 16191 0.010254882809249466 GENSLIVSP 9 Unmodified _GENSLIVSP_ 0 0 0 ENSG00000162757|ENST00000294811|C1orf74 ENSG00000162757|ENST00000294811|C1orf74 ENSG00000162757|ENST00000294811|C1orf74 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.24212646484375 2 458.242732 914.470912 -0.029793 -1.3653E-05 0.15914 7.2924E-05 0.12934 5.9271E-05 458.2427614944362 95.916 1.447 92.035 91.579 93.026 -3.881 86 41 3 0 0 0 0.44932 1 18536 18536 22.736 0 1 5856900 16085 5364 10504 10507 16192 16192 0.010254882809249466 GENYLTHQ 8 Unmodified _GENYLTHQ_ 0 0 0 REV__ENST00000430825.3_1_7:156461725-156469144:-|nuORF REV__ENST00000430825.3_1_7:156461725-156469144:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2368469238281 2 481.222331 960.430109 NaN NaN NaN NaN NaN NaN NaN 33.164 1 30.948 30.448 31.448 -2.2158 0 0 0 0.20294 1 5769 5769 23.148 3.7094 1 + 16086 21612 10505 10508 16193 16193 -0.0516885303871959 GEPIRLFGE 9 Unmodified _GEPIRLFGE_ 0 0 0 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 509.30615234375 2 509.271824 1016.5291 NaN NaN NaN NaN NaN NaN NaN 120.06 1 115.54 115.04 116.04 -4.5221 0 0 0 0.19512 1 23673 23673 12.241 0 1 16087 5644 10506 10509 16194 16194 0.021491699261900976 GEPSAGKK 8 Unmodified _GEPSAGKK_ 0 0 0 REV__DNAJC5G|p.D32G|1|0.15|ENSG00000163793|chr2:27276823-27276823|A/G|missense_variant REV__DNAJC5G|p.D32G|1|0.15|ENSG00000163793|chr2:27276823-27276823|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7120056152344 2 387.211235 772.407917 -0.31652 -0.00012256 1.7361 0.00067225 1.4196 0.00054969 387.2123447605543 49.158 0.27733 46.277 46.029 46.306 -2.8811 10 7 2 0 0 0 8448 1 9286 9286 0.063987 0 1 602600 + 16088 13728 10507 10510 16195 16195 0.012609672835310448 GEPVPMTGKY 10 Unmodified _GEPVPMTGKY_ 0 0 0 REV__TRIM56|p.V544M|1|0.19|ENSG00000169871|chr7:101088942-101088942|G/A|missense_variant REV__TRIM56|p.V544M|1|0.19|ENSG00000169871|chr7:101088942-101088942|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013244628906 3 360.179437 1077.51648 NaN NaN NaN NaN NaN NaN NaN 46.029 1 43.163 42.663 43.663 -2.8666 0 0 0 0.22588 1 8369 8369 5.4027 0.5057 1 + 16089 25482 10508 10511 16196 16196 -0.01917609528322828 GEQEGAMVAA 10 Unmodified _GEQEGAMVAA_ 0 0 0 nc|ENSG00000138668|Q14103-3|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23486328125 2 481.716024 961.417496 0.13946 6.7179E-05 -0.39705 -0.00019126 -0.25759 -0.00012408 481.7159365912501 39.331 1.0403 39.331 38.924 39.964 0 89 29 4 0 0 0 0.0012438 1 7303 7303 134.3 69.061 1 12501000 16090 4197 10509 10512 16197 16197 -0.06475632493265948 GEQEGAMVAA 10 Unmodified _GEQEGAMVAA_ 0 0 0 nc|ENSG00000138668|Q14103-3|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2481384277344 2 481.716024 961.417496 -0.022462 -1.0821E-05 -0.57765 -0.00027827 -0.60012 -0.00028909 481.71596736022934 41.968 1.0535 39.317 38.829 39.883 -2.651 110 29 6 0 0 0 0.039108 1 7556 7556 110.67 45.44 1 16649000 16091 4197 10509 10512 16198 16198 -0.06475632493265948 GEQEGAMVAA 10 Unmodified _GEQEGAMVAA_ 0 0 0 nc|ENSG00000138668|Q14103-3|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2489013671875 2 481.716024 961.417496 -0.054745 -2.6371E-05 -0.53206 -0.0002563 -0.5868 -0.00028267 481.7159648705933 41.928 1.0907 39.322 38.772 39.863 -2.606 106 30 6 0 0 0 0.23651 1 7505 7505 69.105 3.8699 1 13478000 16092 4197 10509 10512 16199 16199 -0.06475632493265948 GEQEGAMVAA 10 Unmodified _GEQEGAMVAA_ 0 0 0 nc|ENSG00000138668|Q14103-3|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 481.716024 961.417496 -0.1163 -5.6022E-05 -0.077842 -3.7498E-05 -0.19414 -9.3519E-05 481.7160048290582 41.918 0.93841 39.199 38.829 39.768 -2.7191 -0.093428 0.00031812 NaN 134.3 84 26 4 NaN NaN NaN NaN 0 NaN NaN 0 23164000 16093 4197 10509 10512 -0.06475632493265948 GEQESHSLSA 10 Unmodified _GEQESHSLSA_ 0 0 0 ENSG00000178691|ENST00000322652|SUZ12;ENST00000579526.5_1_17:29062080-29093580:+|nuORF ENSG00000178691|ENST00000322652|SUZ12 ENSG00000178691|ENST00000322652|SUZ12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.269775390625 2 522.73326 1043.45197 -0.82667 -0.00043213 0.80079 0.0004186 -0.025879 -1.3528E-05 522.7336716084203 20.398 0.49577 18.763 18.463 18.959 -1.6351 19 13 2 0 0 0 0.3662 1 3130 3130 49.554 49.554 1 614420 16094 6587 10510 10513 16200 16200 -0.06802093080796112 GERDFGVK 8 Unmodified _GERDFGVK_ 0 0 0 ENST00000492931.5_1_20:43251503-43280248:-|nuORF;ENSG00000196839|ENST00000372874|ADA ENST00000492931.5_1_20:43251503-43280248:-|nuORF ENST00000492931.5_1_20:43251503-43280248:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 303.1593017578125 3 303.159253 906.45593 NaN NaN NaN NaN NaN NaN NaN 88.407 1 88.407 87.907 88.907 0 0 0 0 0.21486 1 17257 17257 0.40072 0 1 16095 7313 10511 10514 16201 16201 -0.001039587964214661 GERGPFFFIRR 11 Unmodified _GERGPFFFIRR_ 0 0 0 REV__ENST00000473486.1_1_9:131397608-131397734:-|nuORF REV__ENST00000473486.1_1_9:131397608-131397734:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5311584472656 3 461.254439 1380.74149 NaN NaN NaN NaN NaN NaN NaN 96.371 1 96.371 95.871 96.871 0 0 0 0 0.22632 1 18882 18882 0.0059557 0 1 + 16096 22074 10512 10515 16202 16202 0.06634681056812042 GERIPPPPP 9 Unmodified _GERIPPPPP_ 0 0 0 ENST00000368219.1_1_1:156698226-156698472:-|nuORF ENST00000368219.1_1_1:156698226-156698472:-|nuORF ENST00000368219.1_1_1:156698226-156698472:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25311279296875 2 480.269084 958.523616 -0.064894 -3.1167E-05 1.0089 0.00048456 0.94403 0.00045339 480.2694851080013 43.032 1.9197 40.426 39.896 41.816 -2.606 110 54 3 0 0 0 0.34411 1 7819 7819 29.082 0 1 11693000 16097 9092 10513 10516 16203 16203 0.042694911343687636 GERLDVLVY 9 Unmodified _GERLDVLVY_ 0 0 0 REV__ENST00000268070.8_1_15:100514484-100533361:-|nuORF REV__ENST00000268070.8_1_15:100514484-100533361:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2839965820312 2 532.292756 1062.57096 0.80779 0.00042998 -0.84249 -0.00044845 -0.0347 -1.8471E-05 532.2923034209008 104.98 0.70955 100.92 100.55 101.26 -4.0543 50 19 3 0 0 0 0.48644 1 20202 20202 20.454 2.3073 1 6734800 + 16098 20262 10514 10517 16204 16204 0.04217725614716983 GERPGSLEA 9 Unmodified _GERPGSLEA_ 0 0 0 ENST00000233535.8_1_2:27481772-27486087:-|nuORF ENST00000233535.8_1_2:27481772-27486087:-|nuORF ENST00000233535.8_1_2:27481772-27486087:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2301940917969 2 458.230156 914.445759 0.47873 0.00021937 -0.32433 -0.00014862 0.1544 7.0749E-05 458.22999017772673 29.743 0.49048 27.626 27.386 27.877 -2.1167 32 13 3 0 0 0 0.09885 1 5349 5349 56.177 3.9087 1 7166100 16099 8161 10515 10518 16205 16205 -0.0148856652166387 GERRRSYY 8 Unmodified _GERRRSYY_ 0 0 0 ENST00000539576.5_1_12:123465834-123466670:+|nuORF ENST00000539576.5_1_12:123465834-123466670:+|nuORF ENST00000539576.5_1_12:123465834-123466670:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 362.8919982910156 3 362.852823 1085.53664 NaN NaN NaN NaN NaN NaN NaN 9.1341 1 8.0696 7.5696 8.5696 -1.0645 0 0 0 0.21486 1 958 958 0.40072 0.1317 1 16100 11058 10516 10519 16206 16206 -0.002706777535195215 GERSGLKPP 9 Unmodified _GERSGLKPP_ 0 0 0 ENST00000484651.5_1_4:1725148-1739714:+|nuORF;ENSG00000013810|ENST00000313288|TACC3 ENST00000484651.5_1_4:1725148-1739714:+|nuORF ENST00000484651.5_1_4:1725148-1739714:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.855712890625 3 314.178536 939.513779 -0.4597 -0.00014443 0.42009 0.00013198 -0.039606 -1.2443E-05 314.17863169777 23.519 2.0453 23.519 22.155 24.201 0 154 58 3 0 0 0 0.10537 1 3989 3989 51.415 27.625 1 7098700 16101 1103 10517 10520 16207 16207 0.04160303128992382 GERSGLKPP 9 Unmodified _GERSGLKPP_ 0 0 0 ENST00000484651.5_1_4:1725148-1739714:+|nuORF;ENSG00000013810|ENST00000313288|TACC3 ENST00000484651.5_1_4:1725148-1739714:+|nuORF ENST00000484651.5_1_4:1725148-1739714:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.8588562011719 3 314.178536 939.513779 0.052559 1.6513E-05 -0.12352 -3.8807E-05 -0.070961 -2.2294E-05 314.1784568705184 25.07 2.3072 23.536 21.99 24.297 -1.5342 172 66 4 0 0 0 0.15889 1 3984 3984 24.882 14.808 1 6986700 16102 1103 10517 10520 16208 16208 0.04160303128992382 GERSGLKPP 9 Unmodified _GERSGLKPP_ 0 0 0 ENST00000484651.5_1_4:1725148-1739714:+|nuORF;ENSG00000013810|ENST00000313288|TACC3 ENST00000484651.5_1_4:1725148-1739714:+|nuORF ENST00000484651.5_1_4:1725148-1739714:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.8520812988281 3 314.178536 939.513779 -0.84078 -0.00026415 0.74986 0.00023559 -0.090916 -2.8564E-05 314.1787282179378 25.328 2.2058 23.475 21.985 24.19 -1.8534 162 63 4 0 0 0 0.15889 3 4127 4127;4171;4179 30.703 10.25 1 5109900 16103 1103 10517 10520 16209;16210;16211 16209 0.04160303128992382 GESAGGEY 8 Unmodified _GESAGGEY_ 0 0 0 ENST00000610038.5_1_19:58817468-58823414:+|nuORF;ENST00000434052.5_1_19:58817468-58817630:+|nuORF;ENST00000427361.5_1_19:58817468-58823640:+|nuORF;ENST00000609864.5_1_19:58817468-58823640:+|nuORF;ENST00000608070.5_1_19:58817468-58823569:+|nuORF;ENST00000608004.1_1_19:58817468-58823414:+|nuORF ENST00000610038.5_1_19:58817468-58823414:+|nuORF ENST00000610038.5_1_19:58817468-58823414:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 385.16119384765625 2 385.153583 768.292613 NaN NaN NaN NaN NaN NaN NaN 39.658 1 37.139 36.639 37.639 -2.5194 0 0 0 0.23899 1 7088 7088 1.3295 1.2797 1 16104 9742 10518 10521 16212 16212 -0.1008018163813631 GESAGGEY 8 Unmodified _GESAGGEY_ 0 0 0 ENST00000610038.5_1_19:58817468-58823414:+|nuORF;ENST00000434052.5_1_19:58817468-58817630:+|nuORF;ENST00000427361.5_1_19:58817468-58823640:+|nuORF;ENST00000609864.5_1_19:58817468-58823640:+|nuORF;ENST00000608070.5_1_19:58817468-58823569:+|nuORF;ENST00000608004.1_1_19:58817468-58823414:+|nuORF ENST00000610038.5_1_19:58817468-58823414:+|nuORF ENST00000610038.5_1_19:58817468-58823414:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 385.19976806640625 2 385.153583 768.292613 NaN NaN NaN NaN NaN NaN NaN 22.229 1 20.508 20.008 21.008 -1.7211 0 0 0 0.23899 1 3520 3520 1.3295 0 1 16105 9742 10518 10521 16213 16213 -0.1008018163813631 GESDPMKGV 9 Unmodified _GESDPMKGV_ 0 0 0 nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A nc|ENSG00000181222|P24928|POLR2A nc|ENSG00000181222|P24928|POLR2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.240234375 2 460.213117 918.411682 0.35603 0.00016385 -0.43109 -0.00019839 -0.075054 -3.4541E-05 460.2128973572816 39.472 0.40804 39.472 39.201 39.609 0 15 11 2 0 0 0 0.50308 1 7325 7325 38.176 13.502 1 506990 16106 6715 10519 10522 16214 16214 -0.05078731004914516 GESETHDGN 9 Unmodified _GESETHDGN_ 0 0 0 REV__ENST00000474873.5_1_10:100195027-100205113:-|nuORF REV__ENST00000474873.5_1_10:100195027-100205113:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 473.2352294921875 2 473.18086 944.347168 -0.41845 -0.000198 -1.2498 -0.0005914 -1.6683 -0.0007894 473.1796464736576 64.951 0.55752 64.951 64.616 65.173 0 22 15 2 0 0 0 0.60575 1 12521 12521 0.40827 0 1 1199100 + 16107 15084 10520 10523 16215 16215 -0.12723214557365736 GESGPVHAY 9 Unmodified _GESGPVHAY_ 0 0 0 nc|ENSG00000103534|Q6UXY8-2|TMC5;ENSG00000103534|ENST00000542583|TMC5 nc|ENSG00000103534|Q6UXY8-2|TMC5 nc|ENSG00000103534|Q6UXY8-2|TMC5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2243957519531 2 458.711599 915.408646 0.27347 0.00012544 -0.2676 -0.00012275 0.0058646 2.6902E-06 458.71145234258825 31.26 0.31236 31.26 31.074 31.386 0 12 8 2 0 0 0 0.70873 1 5662 5662 18.135 1.1927 1 648600 16108 12264 10521 10524 16216 16216 -0.052442380674278866 GESGPVHAY 9 Unmodified _GESGPVHAY_ 0 0 0 nc|ENSG00000103534|Q6UXY8-2|TMC5;ENSG00000103534|ENST00000542583|TMC5 nc|ENSG00000103534|Q6UXY8-2|TMC5 nc|ENSG00000103534|Q6UXY8-2|TMC5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23333740234375 2 458.711599 915.408646 -0.12523 -5.7446E-05 0.40707 0.00018673 0.28184 0.00012928 458.71162478684994 33.755 0.48433 31.437 31.079 31.563 -2.3175 18 13 2 0 0 0 0.67345 1 6171 6171 26.341 17.748 1 454830 16109 12264 10521 10524 16217 16217 -0.052442380674278866 GESGPVHAY 9 Unmodified _GESGPVHAY_ 0 0 0 nc|ENSG00000103534|Q6UXY8-2|TMC5;ENSG00000103534|ENST00000542583|TMC5 nc|ENSG00000103534|Q6UXY8-2|TMC5 nc|ENSG00000103534|Q6UXY8-2|TMC5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23114013671875 2 458.711599 915.408646 0.39737 0.00018228 0.25096 0.00011512 0.64833 0.0002974 458.71167827656376 33.586 0.44817 31.37 31.148 31.596 -2.2158 20 12 2 0 0 0 0.55758 1 5846 5846 32.117 10.37 1 415660 16110 12264 10521 10524 16218 16218 -0.052442380674278866 GESIKGLA 8 Unmodified _GESIKGLA_ 0 0 0 REV__SMYD1|p.L283Tfs*4|1|0.54|ENSG00000115593|chr2:88096736-88096737|-/A|frameshift_variant REV__SMYD1|p.L283Tfs*4|1|0.54|ENSG00000115593|chr2:88096736-88096737|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7223815917969 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 102.69 1 98.508 98.008 99.008 -4.1861 0 0 0 0.23366 1 20187 20187 0.12286 0 1 + 16111 15441 10522 10525 16219 16219 0.032541379433382644 GESLASFLTY 10 Unmodified _GESLASFLTY_ 0 0 0 REV__GEMIN5|p.S327L|1|0.5|ENSG00000082516|chr5:154927485-154927485|G/A|missense_variant REV__GEMIN5|p.S327L|1|0.5|ENSG00000082516|chr5:154927485-154927485|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.778076171875 2 544.268947 1086.52334 0.14129 7.69E-05 -0.011323 -6.1626E-06 0.12997 7.0737E-05 544.2688165711695 93.526 1.0364 89.682 89.26 90.296 -3.844 59 20 4 0 0 0 0.69673 1 18008 18008 18.146 1.2041 1 8635500 + 16112 23568 10523 10526 16220 16220 -0.01645973376139409 GESTHEGIQ 9 Unmodified _GESTHEGIQ_ 0 0 0 REV__ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant REV__ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7230224609375 2 479.217246 956.419939 0.10017 4.8003E-05 1.9031 0.00091199 2.0033 0.00095999 479.2178983023734 105.43 0.63579 101.05 100.7 101.34 -4.3764 44 17 3 0 0 0 0.47479 1 20208 20208 30.637 5.2372 1 3520500 + 16113 13048 10524 10527 16221 16221 -0.06001460763945943 GETAVGYAVL 10 Unmodified _GETAVGYAVL_ 0 0 0 REV__nc|ENSG00000130529|Q8TD43-2|TRPM4 REV__nc|ENSG00000130529|Q8TD43-2|TRPM4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2584533691406 2 490.258382 978.502212 0.14737 7.2248E-05 -3.6256 -0.0017775 -3.4782 -0.0017052 490.2581704866714 97.394 0.34615 93.296 93.081 93.427 -4.0978 24 9 4 0 0 0 0.79872 1 19130 19130 19.257 11.968 1 1706500 + 16114 16013 10525 10528 16222 16222 0.012100613149868877 GETKAYVF 8 Unmodified _GETKAYVF_ 0 0 0 ENSG00000071575|ENST00000155926|TRIB2;ENSG00000173334|ENST00000311922|TRIB1 ENSG00000071575|ENST00000155926|TRIB2;ENSG00000173334|ENST00000311922|TRIB1 ENSG00000071575|ENST00000155926|TRIB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2364807128906 2 457.734543 913.454533 0.195 8.9259E-05 0.58532 0.00026792 0.78032 0.00035718 457.73450131811455 72.115 0.97751 72.115 71.598 72.575 0 54 27 3 0 0 0 0.16655 1 13992 13992 49.933 19.708 1 4222200 16115 1452;6288 10526 10529 16223 16223 -0.005655928851979297 GETKAYVF 8 Unmodified _GETKAYVF_ 0 0 0 ENSG00000071575|ENST00000155926|TRIB2;ENSG00000173334|ENST00000311922|TRIB1 ENSG00000071575|ENST00000155926|TRIB2;ENSG00000173334|ENST00000311922|TRIB1 ENSG00000071575|ENST00000155926|TRIB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23663330078125 2 457.734543 913.454533 -0.15128 -6.9244E-05 0.83136 0.00038054 0.68009 0.0003113 457.734661936573 75.528 0.79031 72.113 71.682 72.473 -3.4151 46 22 3 0 0 0 0.12259 1 14707 14707 58.679 26.562 1 4551400 16116 1452;6288 10526 10529 16224 16224 -0.005655928851979297 GETKAYVF 8 Unmodified _GETKAYVF_ 0 0 0 ENSG00000071575|ENST00000155926|TRIB2;ENSG00000173334|ENST00000311922|TRIB1 ENSG00000071575|ENST00000155926|TRIB2;ENSG00000173334|ENST00000311922|TRIB1 ENSG00000071575|ENST00000155926|TRIB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2374267578125 2 457.734543 913.454533 0.065704 3.0075E-05 0.64167 0.00029371 0.70737 0.00032379 457.73463507462856 75.774 0.79527 72.051 71.652 72.447 -3.7227 49 22 3 0 0 0 0.15482 2 14284 14284;14377 52.268 22.044 1 3320300 16117 1452;6288 10526 10529 16225;16226 16225 -0.005655928851979297 GETKAYVF 8 Unmodified _GETKAYVF_ 0 0 0 ENSG00000071575|ENST00000155926|TRIB2;ENSG00000173334|ENST00000311922|TRIB1 ENSG00000071575|ENST00000155926|TRIB2;ENSG00000173334|ENST00000311922|TRIB1 ENSG00000071575|ENST00000155926|TRIB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23651123046875 2 457.734543 913.454533 0.23886 0.00010933 0.37827 0.00017315 0.61712 0.00028248 457.7345513938016 75.69 0.73237 72.057 71.608 72.34 -3.6337 46 20 3 0 0 0 0.075417 2 14364 14364;14417 71.922 27.515 1 3819700 16118 1452;6288 10526 10529 16227;16228 16227 -0.005655928851979297 GETKSSYIA 9 Unmodified _GETKSSYIA_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.M256Nfs*17|1|0.13|ENSG00000121486|chr1:185143918-185143919|-/T|frameshift_variant ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72833251953125 2 478.24019 954.465826 -0.01633 -7.8099E-06 0.6064 0.00029001 0.59007 0.0002822 478.2401993409187 26.924 0.78458 26.924 26.635 27.419 0 57 22 5 0 0 0 0.05093 2 4726 4726;4734 76.825 40.698 1 6975500 16119 3180 10527 10530 16229;16230 16229 -0.013228155817159859 GETKSSYIA 9 Unmodified _GETKSSYIA_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.M256Nfs*17|1|0.13|ENSG00000121486|chr1:185143918-185143919|-/T|frameshift_variant ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7417297363281 2 478.24019 954.465826 0.74927 0.00035833 -0.98535 -0.00047123 -0.23608 -0.0001129 478.23973074039884 28.678 0.65169 26.722 26.468 27.12 -1.9561 67 18 7 0 0 0 0.10157 3 5151 5105;5151;5167 67.838 31.711 1 5845800 16120 3180 10527 10530 16231;16232;16233 16232 -0.013228155817159859 GETKSSYIA 9 Unmodified _GETKSSYIA_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.M256Nfs*17|1|0.13|ENSG00000121486|chr1:185143918-185143919|-/T|frameshift_variant ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74188232421875 2 478.24019 954.465826 0.27272 0.00013042 -0.23544 -0.0001126 0.037274 1.7826E-05 478.2400077120037 28.521 0.4498 26.766 26.531 26.981 -1.7552 28 12 3 0 0 0 0.25495 2 4840 4794;4840 43.772 18.373 1 4209800 16121 3180 10527 10530 16234;16235 16235 -0.013228155817159859 GETKSSYIA 9 Unmodified _GETKSSYIA_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.M256Nfs*17|1|0.13|ENSG00000121486|chr1:185143918-185143919|-/T|frameshift_variant ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7418518066406 2 478.24019 954.465826 0.36393 0.00017404 -0.02793 -1.3357E-05 0.336 0.00016069 478.23994097880285 28.686 0.45074 26.69 26.449 26.9 -1.9962 35 12 4 0 0 0 0.19452 5 4872 4822;4824;4829;4831;4872 47.594 24.858 1 3161000 16122 3180 10527 10530 16236;16237;16238;16239;16240 16240 -0.013228155817159859 GETLIPHY 8 Unmodified _GETLIPHY_ 0 0 0 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant;TAP2|p.V467Lfs*2|1|0.15|ENSG00000204267|chr6:32830680-32830680|C/-|frameshift_variant;TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant;nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2402038574219 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 94.44 1 94.44 93.94 94.94 0 0 0 0 0.19492 1 18494 18494 26.341 6.9023 1 16123 7569 10528 10531 16241 16241 -0.0016619051091311121 GETLIPHY 8 Unmodified _GETLIPHY_ 0 0 0 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant;TAP2|p.V467Lfs*2|1|0.15|ENSG00000204267|chr6:32830680-32830680|C/-|frameshift_variant;TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant;nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2402648925781 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 94.655 1 94.655 94.155 95.155 0 0 0 0 0.17294 1 18537 18537 34.187 0 1 16124 7569 10528 10531 16242 16242 -0.0016619051091311121 GETLIPHY 8 Unmodified _GETLIPHY_ 0 0 0 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant;TAP2|p.V467Lfs*2|1|0.15|ENSG00000204267|chr6:32830680-32830680|C/-|frameshift_variant;TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant;nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2401428222656 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 94.867 1 94.867 94.367 95.367 0 0 0 0 0.11185 1 18579 18579 42.968 8.7807 1 16125 7569 10528 10531 16243 16243 -0.0016619051091311121 GETLIPHY 8 Unmodified _GETLIPHY_ 0 0 0 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant;TAP2|p.V467Lfs*2|1|0.15|ENSG00000204267|chr6:32830680-32830680|C/-|frameshift_variant;TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant;nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.240234375 2 465.239993 928.465432 -0.029942 -1.393E-05 0.39678 0.0001846 0.36684 0.00017067 465.24020051112933 98.828 0.72663 94.696 94.3 95.027 -4.1326 33 20 2 0 0 0 0.098504 3 19410 19363;19410;19458 63.394 26.928 1 2020900 16126 7569 10528 10531 16244;16245;16246 16245 -0.0016619051091311121 GETLIPHY 8 Unmodified _GETLIPHY_ 0 0 0 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant;TAP2|p.V467Lfs*2|1|0.15|ENSG00000204267|chr6:32830680-32830680|C/-|frameshift_variant;TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant;nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2401428222656 2 465.239993 928.465432 0.17321 8.0585E-05 0.33938 0.00015789 0.51259 0.00023848 465.2399566394009 98.909 0.70372 94.639 94.192 94.895 -4.2692 31 19 2 0 0 0 0.15268 4 18896 18853;18896;18920;18941 52.693 21.789 1 1157400 16127 7569 10528 10531 16247;16248;16249;16250 16248 -0.0016619051091311121 GETLIPHY 8 Unmodified _GETLIPHY_ 0 0 0 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant;TAP2|p.V467Lfs*2|1|0.15|ENSG00000204267|chr6:32830680-32830680|C/-|frameshift_variant;TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant;nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2403259277344 2 465.239993 928.465432 0.12489 5.8103E-05 0.43701 0.00020331 0.5619 0.00026142 465.2400060341693 98.552 0.7377 94.595 94.161 94.899 -3.9564 38 21 2 0 0 0 0.15268 3 18947 18852;18897;18947 52.693 16.227 1 1399300 16128 7569 10528 10531 16251;16252;16253 16253 -0.0016619051091311121 GETQAKPEP 9 Unmodified _GETQAKPEP_ 0 0 0 REV__ENSG00000084090|ENST00000337288|STARD7 REV__ENSG00000084090|ENST00000337288|STARD7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7385559082031 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 128.93 1 124.19 123.69 124.69 -4.7408 0 0 0 0.18064 1 24809 24809 26.268 0 1 + 16129 14462 10529 10532 16254 16254 -0.018436997244748454 GETSKWDRNS 10 Unmodified _GETSKWDRNS_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2911376953125 3 393.851148 1178.53161 0.15053 5.9286E-05 1.6271 0.00064083 1.7776 0.00070011 393.8517959252388 49.817 0.58321 49.817 49.547 50.13 0 18 16 2 0 0 0 0.91149 1 9483 9483 0.56317 0.35631 1 381140 16130 1648 10530 10533 16255 16255 -0.05051026406817982 GETSYIRVY 9 Unmodified _GETSYIRVY_ 0 0 0 ENST00000548326.1_1_12:120899824-120899986:-|nuORF;ENST00000548792.1_1_12:120899824-120901956:-|nuORF;ENST00000603963.1_1_12:120899824-120902572:-|nuORF;ENSG00000111786|ENST00000229390|SRSF9 ENST00000548326.1_1_12:120899824-120899986:-|nuORF ENST00000548326.1_1_12:120899824-120899986:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7827758789062 2 544.274564 1086.53457 0.25564 0.00013914 0.33783 0.00018387 0.59346 0.00032301 544.2746449805062 87.314 0.45284 87.314 87.118 87.571 0 16 12 2 0 0 0 0.30909 1 17037 17037 41.956 11.731 1 1510900 16131 2647 10531 10534 16256 16256 -0.005231512819818818 GETSYIRVY 9 Unmodified _GETSYIRVY_ 0 0 0 ENST00000548326.1_1_12:120899824-120899986:-|nuORF;ENST00000548792.1_1_12:120899824-120901956:-|nuORF;ENST00000603963.1_1_12:120899824-120902572:-|nuORF;ENSG00000111786|ENST00000229390|SRSF9 ENST00000548326.1_1_12:120899824-120899986:-|nuORF ENST00000548326.1_1_12:120899824-120899986:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.782958984375 2 544.274564 1086.53457 0.17422 9.4826E-05 -0.038866 -2.1154E-05 0.13536 7.3672E-05 544.2745462371814 91.345 0.72557 87.42 87.098 87.823 -3.9251 33 20 2 0 0 0 0.56623 1 17912 17912 34.402 12.655 1 1898000 16132 2647 10531 10534 16257 16257 -0.005231512819818818 GETSYIRVY 9 Unmodified _GETSYIRVY_ 0 0 0 ENST00000548326.1_1_12:120899824-120899986:-|nuORF;ENST00000548792.1_1_12:120899824-120901956:-|nuORF;ENST00000603963.1_1_12:120899824-120902572:-|nuORF;ENSG00000111786|ENST00000229390|SRSF9 ENST00000548326.1_1_12:120899824-120899986:-|nuORF ENST00000548326.1_1_12:120899824-120899986:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7843017578125 2 544.274564 1086.53457 0.21968 0.00011957 0.11946 6.5019E-05 0.33914 0.00018459 544.2745208424087 91.212 0.62038 87.404 87.032 87.652 -3.8083 34 17 3 0 0 0 0.56623 1 17433 17433 34.402 7.5181 1 1858100 16133 2647 10531 10534 16258 16258 -0.005231512819818818 GETSYIRVY 9 Unmodified _GETSYIRVY_ 0 0 0 ENST00000548326.1_1_12:120899824-120899986:-|nuORF;ENST00000548792.1_1_12:120899824-120901956:-|nuORF;ENST00000603963.1_1_12:120899824-120902572:-|nuORF;ENSG00000111786|ENST00000229390|SRSF9 ENST00000548326.1_1_12:120899824-120899986:-|nuORF ENST00000548326.1_1_12:120899824-120899986:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 544.274564 1086.53457 0.32818 0.00017862 -0.20097 -0.00010938 0.12721 6.9239E-05 544.2745231653533 91.45 0.50706 87.355 87.125 87.633 -4.0946 -0.018261 -0.00021808 NaN 41.956 26 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1528300 16134 2647 10531 10534 -0.005231512819818818 GEVGKLFVA 9 Unmodified _GEVGKLFVA_ 0 0 0 TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant;TBC1D9|p.N1245Kfs*14|1|0.15|ENSG00000109436|chr4:140622261-140622262|-/T|frameshift_variant;ENSG00000109436|ENST00000442267|TBC1D9 TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23193359375 2 460.26601 918.517468 -0.3617 -0.00016648 0.50279 0.00023142 0.14109 6.4939E-05 460.2662389130831 105.41 0.49213 101.15 100.89 101.38 -4.2638 23 13 2 0 0 0 0.13932 1 20759 20759 45.7 18.816 1 1425600 16135 2527 10532 10535 16259 16259 0.05494972902852169 GEVGKLFVA 9 Unmodified _GEVGKLFVA_ 0 0 0 TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant;TBC1D9|p.N1245Kfs*14|1|0.15|ENSG00000109436|chr4:140622261-140622262|-/T|frameshift_variant;ENSG00000109436|ENST00000442267|TBC1D9 TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2374267578125 2 460.26601 918.517468 0.039311 1.8094E-05 0.34412 0.00015838 0.38343 0.00017648 460.2660369555532 105.58 0.63714 101.21 100.8 101.44 -4.3764 23 17 2 0 0 0 0.13932 1 20233 20233 45.7 20.3 1 1997800 16136 2527 10532 10535 16260 16260 0.05494972902852169 GEVGKLFVA 9 Unmodified _GEVGKLFVA_ 0 0 0 TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant;TBC1D9|p.N1245Kfs*14|1|0.15|ENSG00000109436|chr4:140622261-140622262|-/T|frameshift_variant;ENSG00000109436|ENST00000442267|TBC1D9 TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 460.26601 918.517468 0.74573 0.00034323 -0.35848 -0.00016499 0.38725 0.00017824 460.26581434107516 105.35 0.49281 101.26 100.94 101.43 -4.0913 0.056136 -0.00043117 NaN 45.7 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1199400 16137 2527 10532 10535 0.05494972902852169 GEVLLHRL 8 Unmodified _GEVLLHRL_ 0 0 0 ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;ANAPC4|p.R419Sfs*21|1|0.18|ENSG00000053900|chr4:25403004-25403005|-/T|frameshift_variant;nc|ENSG00000053900|Q9UJX5-2|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 468.7166748046875 2 468.784902 935.55525 0.091853 4.3059E-05 0.091546 4.2915E-05 0.1834 8.5975E-05 468.78485579295284 26.525 0.58352 26.525 26.189 26.773 0 36 16 3 0 0 0 0.89147 1 4695 4695 0.0082765 0 1 2805300 16138 1259 10533 10536 16261 16261 0.08489483888308769 GEVLLWTYN 9 Unmodified _GEVLLWTYN_ 0 0 0 REV__nc|ENSG00000010310|P48546-2|GIPR REV__nc|ENSG00000010310|P48546-2|GIPR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7847900390625 2 547.779482 1093.54441 0.22216 0.00012169 -3.4619 -0.0018964 -3.2397 -0.0017747 547.7767615151628 139.28 0.10379 134.64 134.58 134.69 -4.6439 4 2 2 0 0 0 0.28819 1 27503 27503 32.305 14.159 1 1139400 + 16139 13920 10534 10537 16262 16262 0.0013803672336507589 GEVQLTVSP 9 Unmodified _GEVQLTVSP_ 0 0 0 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;ENSG00000196576|ENST00000359337|PLXNB2 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2500915527344 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 87.108 1 87.108 86.608 87.608 0 0 0 0 0.17061 1 17002 17002 27.629 2.2295 1 16140 7284 10535 10538 16263 16263 0.019457747979458873 GEVQLTVSP 9 Unmodified _GEVQLTVSP_ 0 0 0 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;ENSG00000196576|ENST00000359337|PLXNB2 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2584533691406 2 465.250557 928.486562 -0.11902 -5.5373E-05 -0.20954 -9.7488E-05 -0.32856 -0.00015286 465.25035627708866 90.665 0.72515 86.805 86.404 87.129 -3.8595 29 20 2 0 0 0 0.44932 1 17699 17699 22.736 3.4793 1 1743700 16141 7284 10535 10538 16264 16264 0.019457747979458873 GEVVERGSP 9 Unmodified _GEVVERGSP_ 0 0 0 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2400817871094 2 465.237981 928.461409 0.42954 0.00019984 1.0221 0.00047552 1.4516 0.00067536 465.2384906816404 32.875 0.83079 30.66 30.351 31.182 -2.2158 33 23 2 0 0 0 0.55539 1 5796 5796 16.149 16.149 1 639020 16142 7151 10536 10539 16265 16265 -0.005682800046088232 GEWDLRRPI 9 Unmodified _GEWDLRRPI_ 0 0 0 REV__ENST00000478415.1_1_X:79999455-80064970:-|nuORF REV__ENST00000478415.1_1_X:79999455-80064970:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2201843261719 3 381.208607 1140.60399 NaN NaN NaN NaN NaN NaN NaN 19.839 1 18.203 17.703 18.703 -1.6351 0 0 0 0.19634 1 3017 3017 0.073264 0 1 + 16143 13212 10537 10540 16266 16266 0.03931352457425419 GEYDRLEY 8 Unmodified _GEYDRLEY_ 0 0 0 REV__ENST00000401466.5_1_2:120439392-120439584:+|nuORF REV__ENST00000401466.5_1_2:120439392-120439584:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2710571289062 2 522.735271 1043.45599 -0.0052233 -2.7304E-06 -1.0086 -0.00052724 -1.0138 -0.00052997 522.7345413446833 51.972 0.68785 48.92 48.52 49.207 -3.0517 32 19 2 0 0 0 0.8748 1 9572 9572 14.838 0 1 3483400 + 16144 21360 10538 10541 16267 16267 -0.064000035871004 GEYDRPFTP 9 Unmodified _GEYDRPFTP_ 0 0 0 REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2724609375 2 541.251089 1080.48762 NaN NaN NaN NaN NaN NaN NaN 55.937 1 52.748 52.248 53.248 -3.1895 0 0 0 0.20294 1 10353 10353 22.736 0.98964 1 + 16145 13346 10539 10542 16268 16268 -0.04940010833138331 GEYEPKIEV 9 Unmodified _GEYEPKIEV_ 0 0 0 CNTN3|p.S585Ifs*9|1|0.05|ENSG00000113805|chr3:74302724-74302725|-/GGAAATA|frameshift_variant;CNTN3|p.S585Tfs*10|1|0.04|ENSG00000113805|chr3:74302722-74302723|-/AG|frameshift_variant;ENSG00000113805|ENST00000263665|CNTN3;ENST00000394261.2_1_3:1189741-1339676:+|nuORF;CNTN6|p.Y315Lfs*19|1|0.23|ENSG00000134115|chr3:1321825-1321826|-/T|frameshift_variant;ENST00000528727.5_1_11:99426939-100095567:+|nuORF;nc|ENSG00000149972|O94779-4|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5;CNTN6|p.K418Sfs*63|2|0.28|ENSG00000134115|chr3:1329817-1329817|A/-|frameshift_variant;CNTN6|p.G547Efs*16|1|0.3|ENSG00000134115|chr3:1372438-1372438|A/-|frameshift_variant;CNTN6|p.P893Qfs*22|1|0.33|ENSG00000134115|chr3:1385766-1385766|C/-|frameshift_variant;CNTN6|p.V894Sfs*25|1|0.27|ENSG00000134115|chr3:1385765-1385766|-/C|frameshift_variant;CNTN6|p.M994Yfs*15|1|0.07|ENSG00000134115|chr3:1402479-1402480|-/T|frameshift_variant;ENSG00000134115|ENST00000446702|CNTN6;ENST00000438282.6_1_3:2613181-3030164:+|nuORF;CNTN4|p.P504Lfs*18|4|0.33|ENSG00000144619|chr3:3026122-3026122|C/-|frameshift_variant;ENST00000430505.6_1_3:2613181-3079017:+|nuORF;CNTN4|p.G935Dfs*35|1|0.41|ENSG00000144619|chr3:3043692-3043692|A/-|frameshift_variant;ENSG00000144619|ENST00000418658|CNTN4 CNTN3|p.S585Ifs*9|1|0.05|ENSG00000113805|chr3:74302724-74302725|-/GGAAATA|frameshift_variant;CNTN6|p.K418Sfs*63|2|0.28|ENSG00000134115|chr3:1329817-1329817|A/-|frameshift_variant;ENST00000438282.6_1_3:2613181-3030164:+|nuORF CNTN6|p.K418Sfs*63|2|0.28|ENSG00000134115|chr3:1329817-1329817|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2711791992188 2 532.268947 1062.52334 -0.2919 -0.00015537 -1.4559 -0.00077494 -1.7478 -0.00093031 532.2680744735349 106.25 0.73454 101.98 101.69 102.42 -4.2638 47 20 3 0 0 0 0.45972 1 20871 20871 8.1555 6.9407 1 6577000 16146 599;601;600 10540 10543 16269 16269 -0.005419733761300449 GEYSPQPLPV 10 Unmodified _GEYSPQPLPV_ 0 0 0 ENST00000513443.5_1_5:81268034-81268226:+|nuORF ENST00000513443.5_1_5:81268034-81268226:+|nuORF ENST00000513443.5_1_5:81268034-81268226:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7767944335938 2 543.776939 1085.53933 -0.087869 -4.7781E-05 0.1664 9.0482E-05 0.078526 4.2701E-05 543.7769675306715 111.21 0.52005 106.79 106.48 107 -4.4231 31 14 3 0 0 0 0.23583 1 21944 21944 1.0651 0.43832 1 3342600 16147 10763 10541 10544 16270 16270 -2.2671392343909247E-05 GFALRPVF 8 Unmodified _GFALRPVF_ 0 0 0 REV__ENST00000392038.6_1_19:40739504-40739735:-|nuORF REV__ENST00000392038.6_1_19:40739504-40739735:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7642517089844 2 453.763438 905.512323 NaN NaN NaN NaN NaN NaN NaN 129.64 1 129.64 129.14 130.14 0 0 0 0 0.22847 1 25614 25614 10.074 9.9511 1 + 16148 21210 10542 10545 16271 16271 0.05578713830891502 GFCGCCGPYC 10 Unmodified _GFCGCCGPYC_ 0 0 0 ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.0208740234375 3 337.10601 1008.2962 NaN NaN NaN NaN NaN NaN NaN 27.281 1 27.281 26.781 27.781 0 0 0 0 0.22588 1 4807 4807 0.15932 0.15932 1 16149 11238 10543 10546 16272 16272 -0.2076161772345131 GFCGCCGPYC 10 Unmodified _GFCGCCGPYC_ 0 0 0 ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.148681640625 3 337.10601 1008.2962 NaN NaN NaN NaN NaN NaN NaN 54.501 1 54.501 54.001 55.001 0 0 0 0 0.22588 1 10394 10394 0.15932 0.15932 1 16150 11238 10543 10546 16273 16273 -0.2076161772345131 GFCGCCGPYC 10 Unmodified _GFCGCCGPYC_ 0 0 0 ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.03076171875 3 337.10601 1008.2962 NaN NaN NaN NaN NaN NaN NaN 52.748 1 49.66 49.16 50.16 -3.0876 0 0 0 0.22588 1 9704 9704 0.15932 0.15932 1 16151 11238 10543 10546 16274 16274 -0.2076161772345131 GFCGCCGPYC 10 Unmodified _GFCGCCGPYC_ 0 0 0 ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.0307922363281 3 337.10601 1008.2962 NaN NaN NaN NaN NaN NaN NaN 129.96 1 125.13 124.63 125.63 -4.8355 0 0 0 0.22588 1 24954 24954 0.15932 0.15932 1 16152 11238 10543 10546 16275 16275 -0.2076161772345131 GFCGCCGPYC 10 Unmodified _GFCGCCGPYC_ 0 0 0 ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.8501281738281 3 337.10601 1008.2962 NaN NaN NaN NaN NaN NaN NaN 25.251 1 23.398 22.898 23.898 -1.8534 0 0 0 2.8426 1 4142 4142 0.0013812 0 1 16153 11238 10543 10546 16276 16276 -0.2076161772345131 GFCGCCGPYC 10 Unmodified _GFCGCCGPYC_ 0 0 0 ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0504455566406 3 337.10601 1008.2962 NaN NaN NaN NaN NaN NaN NaN 34.223 1 32.007 31.507 32.507 -2.2158 0 0 0 0.22588 1 5990 5990 0.15932 0.15932 1 16154 11238 10543 10546 16277 16277 -0.2076161772345131 GFCGCCGPYC 10 Unmodified _GFCGCCGPYC_ 0 0 0 ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF ENST00000556252.1_1_14:20920241-20920502:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.06201171875 3 337.10601 1008.2962 NaN NaN NaN NaN NaN NaN NaN 38.813 1 36.408 35.908 36.908 -2.4049 0 0 0 0.22588 1 6915 6915 0.77653 0.31819 1 16155 11238 10543 10546 16278 16278 -0.2076161772345131 GFCSAAHP 8 Unmodified _GFCSAAHP_ 0 0 0 REV__nc|ENSG00000198561|O60716-32|CTNND1 REV__nc|ENSG00000198561|O60716-32|CTNND1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 394.86151123046875 2 395.171056 788.327559 NaN NaN NaN NaN NaN NaN NaN 74.892 1 74.892 74.392 75.392 0 0 0 0 0.23749 1 14544 14544 0.62683 0 1 + 16156 13605 10544 10547 16279 16279 -0.07507217311183467 GFCSAAHP 8 Unmodified _GFCSAAHP_ 0 0 0 REV__nc|ENSG00000198561|O60716-32|CTNND1 REV__nc|ENSG00000198561|O60716-32|CTNND1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 395.1689453125 2 395.171056 788.327559 NaN NaN NaN NaN NaN NaN NaN 82.647 1 82.647 82.147 83.147 0 0 0 0 0.23711 1 16107 16107 1.7423 1.6194 1 + 16157 13605 10544 10547 16280 16280 -0.07507217311183467 GFDEALLPFG 10 Unmodified _GFDEALLPFG_ 0 0 0 REV__nc|ENSG00000124587|Q13608-3|PEX6 REV__nc|ENSG00000124587|Q13608-3|PEX6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2665405273438 2 533.266207 1064.51786 NaN NaN NaN NaN NaN NaN NaN 57.823 1 57.823 57.323 58.323 0 0 0 0 2.8426 1 11058 11058 6.6304 0.42459 1 + 16158 15787 10545 10548 16281 16281 -0.01181652167952052 GFFAGGPA 8 Unmodified _GFFAGGPA_ 0 0 0 REV__SSC5D|p.A244Gfs*45|1|0.38|ENSG00000179954|chr19:55490908-55490909|-/G|frameshift_variant REV__SSC5D|p.A244Gfs*45|1|0.38|ENSG00000179954|chr19:55490908-55490909|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 723.2111206054688 1 723.346052 722.338775 0.68902 0.0004984 -0.23478 -0.00016983 0.45424 0.00032857 723.3443382310749 164.66 0.10324 159.6 159.55 159.65 -5.0648 4 2 2 0 0 0 0.9003 1 32115 32115 0 0 1 3891400 + 16159 24737 10546 10549 16282 16282 -0.033500719453968486 GFFLGPPPP 9 Unmodified _GFFLGPPPP_ 0 0 0 REV__ENSG00000248905|ENST00000616417|FMN1 REV__ENSG00000248905|ENST00000616417|FMN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1691589355469 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 39.346 1 39.346 38.846 39.846 0 0 0 0 0.23508 1 7304 7304 2.9952 0 1 + 16160 19818 10547 10550 16283 16283 0.018796052196989876 GFGAGLSF 8 Unmodified _GFGAGLSF_ 0 0 0 REV__nc|ENSG00000103546|P23975-3|SLC6A2 REV__nc|ENSG00000103546|P23975-3|SLC6A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.0866394042969 2 378.189771 754.36499 NaN NaN NaN NaN NaN NaN NaN 99.305 1 99.305 98.805 99.805 0 0 0 0 0.21486 1 19475 19475 2.8892 0 1 + 16161 14892 10548 10551 16284 16284 -0.022018027739022727 GFGFGKNF 8 Unmodified _GFGFGKNF_ 0 0 0 REV__VDAC2|p.K45Vfs*14|1|0.25|ENSG00000165637|chr10:75214052-75214053|AA/-|frameshift_variant REV__VDAC2|p.K45Vfs*14|1|0.25|ENSG00000165637|chr10:75214052-75214053|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2167053222656 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 81.652 1 81.652 81.152 82.152 0 0 0 0 0.21486 1 15904 15904 6.3541 0 1 + 16162 17789 10549 10552 16285 16285 -0.023224249912459527 GFGGYGYRS 9 Unmodified _GFGGYGYRS_ 0 0 0 ENSG00000186977|ENST00000334151|KRTAP19-5;CON__Q3LI72 ENSG00000186977|ENST00000334151|KRTAP19-5 ENSG00000186977|ENST00000334151|KRTAP19-5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7770080566406 2 482.219591 962.42463 NaN NaN NaN NaN NaN NaN NaN 112.8 1 108.28 107.78 108.78 -4.5259 0 0 0 0.19646 1 21653 21653 0.40827 0.39999 1 + 16163 692 10550 10553 16286 16286 -0.058085318305188594 GFGQGSHLA 9 Unmodified _GFGQGSHLA_ 0 0 0 ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENSG00000156802|ENST00000287394|ATAD2 ENSG00000156802|ENST00000287394|ATAD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21612548828125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 81.313 1 81.313 80.813 81.813 0 0 0 0 0.23048 1 15834 15834 14.582 3.4672 1 16164 5104 10551 10554 16287 16287 -0.02724514484964402 GFIVPIET 8 Unmodified _GFIVPIET_ 0 0 0 REV__tr|U7T2A7|U7T2A7_FUSNU6,7-dimethyl-8-ribityllumazinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ribHPE=3SV=1 REV__tr|U7T2A7|U7T2A7_FUSNU6,7-dimethyl-8-ribityllumazinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ribHPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 438.2483825683594 2 438.247286 874.48002 NaN NaN NaN NaN NaN NaN NaN 92.498 1 88.69 88.19 89.19 -3.8083 0 0 0 0.22847 1 17725 17725 10.074 3.8681 1 + 16165 25319 10552 10555 16288 16288 0.03775881637238854 GFKRAFKI 8 Unmodified _GFKRAFKI_ 0 0 0 ENSG00000101290|ENST00000460006|CDS2;ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000163624|ENST00000295887|CDS1 ENSG00000101290|ENST00000460006|CDS2 ENSG00000101290|ENST00000460006|CDS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.8669128417969 3 322.867633 965.581071 NaN NaN NaN NaN NaN NaN NaN 19.245 1 19.245 18.745 19.745 0 0 0 0 0.21486 1 3137 3137 0.45834 0 1 16166 2054 10553 10556 16289 16289 0.09690378130596855 GFLGAMGP 8 Unmodified _GFLGAMGP_ 0 0 0 REV__ENSG00000196739|ENST00000356083|COL27A1 REV__ENSG00000196739|ENST00000356083|COL27A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21551513671875 2 375.186174 748.357796 NaN NaN NaN NaN NaN NaN NaN 20.869 1 19.484 18.984 19.984 -1.3847 0 0 0 0.21486 1 3256 3256 6.3541 3.4649 1 + 16167 19277 10554 10557 16290 16290 -0.026448586459764556 GFLGDRCQYRQ 11 Unmodified _GFLGDRCQYRQ_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1;ENST00000556356.1_1_12:57602422-57606335:+|nuORF ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.8639831542969 4 336.413477 1341.6248 0.11591 3.8993E-05 -0.37276 -0.0001254 -0.25685 -8.6409E-05 336.41347201337766 36.752 0.41055 34.404 34.14 34.55 -2.3479 39 11 4 0 0 0 0.66106 1 6462 6462 0.026206 0 1 1978500 16168 3265 10555 10558 16291 16291 -0.03234425225241466 GFLGSDSYSA 10 Unmodified _GFLGSDSYSA_ 0 0 0 REV__ENSG00000140740|ENST00000268379|UQCRC2 REV__ENSG00000140740|ENST00000268379|UQCRC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.8197021484375 3 335.150423 1002.42944 -0.095525 -3.2015E-05 -1.1852 -0.00039722 -1.2807 -0.00042924 335.4847668793147 48.178 0.73802 48.178 47.965 48.703 0 66 20 5 0 0 0 0.52989 1 9122 9122 0.043787 0 1 3395200 + 16169 16594 10556 10559 16292 16292 -0.07167692478435583 GFLIWKFV 8 Unmodified _GFLIWKFV_ 0 0 0 REV__nc|ENSG00000131482|P35575-2|G6PC1 REV__nc|ENSG00000131482|P35575-2|G6PC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.47119140625 3 337.200501 1008.57967 NaN NaN NaN NaN NaN NaN NaN 96.283 1 92.233 91.733 92.733 -4.0496 0 0 0 0.23837 1 18878 18878 0.0082765 0 1 + 16170 16078 10557 10560 16293 16293 0.0757274404185182 GFLIWKFV 8 Unmodified _GFLIWKFV_ 0 0 0 REV__nc|ENSG00000131482|P35575-2|G6PC1 REV__nc|ENSG00000131482|P35575-2|G6PC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.473876953125 3 337.200501 1008.57967 NaN NaN NaN NaN NaN NaN NaN 79.708 1 75.904 75.404 76.404 -3.8048 0 0 0 0.23837 1 15126 15126 0.0082765 0 1 + 16171 16078 10557 10560 16294 16294 0.0757274404185182 GFLIWKFV 8 Unmodified _GFLIWKFV_ 0 0 0 REV__nc|ENSG00000131482|P35575-2|G6PC1 REV__nc|ENSG00000131482|P35575-2|G6PC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.20880126953125 3 337.200501 1008.57967 NaN NaN NaN NaN NaN NaN NaN 20.668 1 18.947 18.447 19.447 -1.7211 0 0 0 0.23837 1 3192 3192 0.0082765 0 1 + 16172 16078 10557 10560 16295 16295 0.0757274404185182 GFLLFKGIL 9 Unmodified _GFLLFKGIL_ 0 0 0 REV__nc|ENSG00000135902|Q07001-2|CHRND REV__nc|ENSG00000135902|Q07001-2|CHRND MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.5482482910156 3 336.547789 1006.62154 NaN NaN NaN NaN NaN NaN NaN 179.15 1 174.24 173.74 174.74 -4.9114 0 0 0 0.19624 1 35745 35745 0 0 1 + 16173 16296 10558 10561 16296 16296 0.11849299730374696 GFLLLKYR 8 Unmodified _GFLLLKYR_ 0 0 0 ENSG00000198681|ENST00000356661|MAGEA1 ENSG00000198681|ENST00000356661|MAGEA1 ENSG00000198681|ENST00000356661|MAGEA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.2345275878906 3 337.211289 1008.61204 NaN NaN NaN NaN NaN NaN NaN 78.867 1 78.867 78.367 79.367 0 0 0 0 0.21486 1 15350 15350 0.45834 0.18932 1 16174 7470 10559 10562 16297 16297 0.10807531444845608 GFLNQISQC 9 Unmodified _GFLNQISQC_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0617980957031 3 337.163898 1008.46987 NaN NaN NaN NaN NaN NaN NaN 121.9 1 117.37 116.87 117.87 -4.5305 0 0 0 0.23508 1 23470 23470 0.96228 0.18574 1 + 16175 19707 10560 10563 16298 16298 -0.03403049359656052 GFLTSSFR 8 Unmodified _GFLTSSFR_ 0 0 0 nc|ENSG00000187010|Q02161-3|RHD;nc|ENSG00000187010|Q02161-2|RHD;nc|ENSG00000187010|Q02161-6|RHD;ENST00000564398.5_1_1:25598999-25633293:+|nuORF;nc|ENSG00000187010|Q02161-5|RHD;ENSG00000187010|ENST00000328664|RHD;nc|ENSG00000187010|Q02161-4|RHD nc|ENSG00000187010|Q02161-3|RHD nc|ENSG00000187010|Q02161-3|RHD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23028564453125 2 457.74016 913.465767 NaN NaN NaN NaN NaN NaN NaN 19.603 1 18.207 17.707 18.707 -1.3966 0 0 0 0.21486 1 3236 3236 13.042 0.51092 1 16176 7088 10561 10564 16299 16299 0.005572292089482289 GFMTLDSC 8 Unmodified _GFMTLDSC_ 0 0 0 REV__ENST00000274629.8_1_5:169816354-169816504:-|nuORF REV__ENST00000274629.8_1_5:169816354-169816504:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22772216796875 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 50.559 1 47.678 47.178 48.178 -2.8811 0 0 0 0.23782 1 9593 9593 0.12286 0 1 + 16177 20285 10562 10565 16300 16300 -0.10045147314099268 GFPARGGQ 8 Unmodified _GFPARGGQ_ 0 0 0 ENST00000509395.1_1_5:180480083-180480502:+|nuORF ENST00000509395.1_1_5:180480083-180480502:+|nuORF ENST00000509395.1_1_5:180480083-180480502:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.205078125 2 395.203744 788.392936 NaN NaN NaN NaN NaN NaN NaN 125.22 1 120.62 120.12 121.12 -4.5984 0 0 0 0.21486 1 24690 24690 2.8892 0 1 16178 10732 10563 10566 16301 16301 -0.009724797938019947 GFPNRRVY 8 Unmodified _GFPNRRVY_ 0 0 0 ENST00000345523.8_1_19:51305499-51307975:-|nuORF ENST00000345523.8_1_19:51305499-51307975:-|nuORF ENST00000345523.8_1_19:51305499-51307975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.85137939453125 3 336.850643 1007.5301 NaN NaN NaN NaN NaN NaN NaN 22.438 1 22.438 21.938 22.938 0 0 0 0 0.21486 1 3795 3795 1.8442 0 1 16179 8907 10564 10567 16302 16302 0.02663429085748703 GFPRGPEGV 9 Unmodified _GFPRGPEGV_ 0 0 0 REV__ENST00000320631.7_1_11:64621426-64621564:-|nuORF REV__ENST00000320631.7_1_11:64621426-64621564:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2376403808594 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 175.51 1 170.63 170.13 171.13 -4.8803 0 0 0 0.23508 1 34902 34902 4.3292 1.44 1 + 16180 20546 10565 10568 16303 16303 0.0003634506618936939 GFPRGPEGV 9 Unmodified _GFPRGPEGV_ 0 0 0 REV__ENST00000320631.7_1_11:64621426-64621564:-|nuORF REV__ENST00000320631.7_1_11:64621426-64621564:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.238525390625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 175.83 1 170.93 170.43 171.43 -4.9008 0 0 0 0.23508 1 35049 35049 4.3292 1.7518 1 + 16181 20546 10565 10568 16304 16304 0.0003634506618936939 GFQQTYEH 8 Unmodified _GFQQTYEH_ 0 0 0 UNC13C|p.S1724Y|1|0.62|ENSG00000137766|chr15:54500848-54500848|C/A|missense_variant UNC13C|p.S1724Y|1|0.62|ENSG00000137766|chr15:54500848-54500848|C/A|missense_variant UNC13C|p.S1724Y|1|0.62|ENSG00000137766|chr15:54500848-54500848|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0556945800781 3 337.150646 1008.43011 NaN NaN NaN NaN NaN NaN NaN 33.741 1 31.525 31.025 32.025 -2.2158 0 0 0 0.21486 1 5891 5891 1.8442 0 1 16182 26552 10566 10569 16305 16305 -0.0737685303872695 GFRDGFRR 8 Unmodified _GFRDGFRR_ 0 0 0 REV__ENST00000234831.9_2_1:54518757-54519006:-|nuORF REV__ENST00000234831.9_2_1:54518757-54519006:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0499572753906 3 337.514142 1009.5206 -1.95 -0.00065815 0.55455 0.00018717 -1.3954 -0.00047098 337.51429742682893 17.894 1.0873 16.379 15.557 16.645 -1.5148 51 30 2 0 0 0 1.0265 1 2606 2606 1.6526 0 1 897880 + 16183 20079 10567 10570 16306 16306 0.01621660800230984 GFSGNGIVKTD 11 Unmodified _GFSGNGIVKTD_ 0 0 0 REV__ENSG00000082701|ENST00000264235|GSK3B REV__ENSG00000082701|ENST00000264235|GSK3B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77880859375 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 19.129 1 17.494 16.994 17.994 -1.6351 0 0 0 0.22632 1 2869 2869 0.58532 0 1 + 16184 14443 10568 10571 16307 16307 -0.0026405277033063612 GFSNRFTSK 9 Unmodified _GFSNRFTSK_ 0 0 0 REV__PCDHB10|p.N788K|1|0.17|ENSG00000120324|chr5:141194916-141194916|T/A|missense_variant REV__PCDHB10|p.N788K|1|0.17|ENSG00000120324|chr5:141194916-141194916|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2644653320312 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 76.963 1 73.548 73.048 74.048 -3.4151 0 0 0 0.19687 1 15024 15024 8.1555 1.5252 1 + 16185 24444 10569 10572 16308 16308 3.401640651645721E-05 GFSNYKFF 8 Unmodified _GFSNYKFF_ 0 0 0 nc|ENSG00000102383|Q96MV8-3|ZDHHC15;ENSG00000102383|ENST00000373367|ZDHHC15;ZDHHC2|p.F175C|1|0.05|ENSG00000104219|chr8:17205702-17205702|T/G|missense_variant;ENST00000411421.1_1_13:69559377-69559785:+|nuORF;ZDHHC2|p.S285Qfs*3|1|0.14|ENSG00000104219|chr8:17210049-17210049|T/-|frameshift_variant;nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20;nc|ENSG00000180776|Q5W0Z9-3|ZDHHC20;ENSG00000180776|ENST00000400590|ZDHHC20;ENSG00000104219|ENST00000262096|ZDHHC2 nc|ENSG00000102383|Q96MV8-3|ZDHHC15;ENST00000411421.1_1_13:69559377-69559785:+|nuORF ENST00000411421.1_1_13:69559377-69559785:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.2361145019531 3 337.164116 1008.47052 NaN NaN NaN NaN NaN NaN NaN 89.982 1 86.123 85.623 86.623 -3.8595 0 0 0 0.21486 1 17606 17606 1.8442 0 1 16186 2129;2223 10570 10573 16309 16309 -0.03337886648296262 GFTPPPLRDS 10 Unmodified _GFTPPPLRDS_ 0 0 0 nc|ENSG00000230246|P0DKV0|SPATA31C1;nc|ENSG00000230246|P0DKV0-2|SPATA31C1;nc|ENSG00000177910|B4DYI2|SPATA31C2 nc|ENSG00000230246|P0DKV0|SPATA31C1 nc|ENSG00000230246|P0DKV0|SPATA31C1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7805786132812 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 43.643 1 40.896 40.396 41.396 -2.7475 0 0 0 2.8426 1 7885 7885 6.6304 6.423 1 16187 12605 10571 10574 16310 16310 0.011205549548776617 GFWDKLRS 8 Unmodified _GFWDKLRS_ 0 0 0 REV__ENSG00000152377|ENST00000394945|SPOCK1 REV__ENSG00000152377|ENST00000394945|SPOCK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0255126953125 3 336.846898 1007.51886 -2.2941 -0.00077277 1.9651 0.00066195 -0.32899 -0.00011082 336.8486052421464 14.624 0.16519 13.414 13.348 13.513 -1.2106 7 4 2 0 0 0 1.0268 1 1956 1956 0.45834 0 1 66644 + 16188 17107 10572 10575 16311 16311 0.015406069916252818 GFWDKLRS 8 Unmodified _GFWDKLRS_ 0 0 0 REV__ENSG00000152377|ENST00000394945|SPOCK1 REV__ENSG00000152377|ENST00000394945|SPOCK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 336.846898 1007.51886 -0.93183 -0.00031389 2.6352 0.00088767 1.7034 0.00057378 337.1823889342491 14.584 0.13755 13.47 13.399 13.536 -1.1142 0.027983 0.00018996 NaN 0.45834 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 103280 + 16189 17107 10572 10575 0.015406069916252818 GFYNDPHD 8 Unmodified _GFYNDPHD_ 0 0 0 LAMC2|p.V488Sfs*24|1|0.32|ENSG00000058085|chr1:183227688-183227688|G/-|frameshift_variant;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2 LAMC2|p.V488Sfs*24|1|0.32|ENSG00000058085|chr1:183227688-183227688|G/-|frameshift_variant LAMC2|p.V488Sfs*24|1|0.32|ENSG00000058085|chr1:183227688-183227688|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 482.6929931640625 2 482.693407 963.37226 NaN NaN NaN NaN NaN NaN NaN 161.88 1 156.69 156.19 157.19 -5.1878 0 0 0 0.2343 1 31424 31424 0.12286 0 1 16190 1290 10573 10576 16312 16312 -0.11089114964147484 GGAAGGTE 8 Unmodified _GGAAGGTE_ 0 0 0 ENST00000339142.6_2_17:77020258-77030443:+|nuORF;ENST00000582295.1_1_17:77020258-77021030:+|nuORF;ENST00000580454.5_2_17:77019075-77040120:+|nuORF;ENST00000579760.5_2_17:77020159-77040120:+|nuORF ENST00000339142.6_2_17:77020258-77030443:+|nuORF ENST00000339142.6_2_17:77020258-77030443:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650390625 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 152.95 1 148.18 147.68 148.68 -4.7684 0 0 0 0.2396 1 30392 30392 0.12286 0 1 16191 8836 10574 10577 16313 16313 -0.0634812960141744 GGAAQPLR 8 Unmodified _GGAAQPLR_ 0 0 0 IP6K1|p.K150Efs*26|1|0.24|ENSG00000176095|chr3:49732958-49732959|TT/-|frameshift_variant IP6K1|p.K150Efs*26|1|0.24|ENSG00000176095|chr3:49732958-49732959|TT/-|frameshift_variant IP6K1|p.K150Efs*26|1|0.24|ENSG00000176095|chr3:49732958-49732959|TT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 385.219970703125 2 385.219395 768.424236 NaN NaN NaN NaN NaN NaN NaN 56.03 1 53.135 52.635 53.635 -2.8944 0 0 0 0.19954 1 10728 10728 24.674 5.2349 1 16192 11948 10575 10578 16314 16314 0.030760932402813523 GGAASGGG 8 Unmodified _GGAASGGG_ 0 0 0 ENSG00000153574|ENST00000283646|RPIA;nc|ENSG00000183864|Q14106-2|TOB2;ENSG00000183864|ENST00000327492|TOB2 ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2617797851562 1 533.231416 532.224139 0.2727 0.00014541 2.2343 0.0011914 2.507 0.0013368 533.2296501815171 135.3 0.14365 130.47 130.38 130.52 -4.8307 5 3 2 0 0 0 0.88282 1 26041 26041 0.69038 0 1 516510 16193 4973 10576 10579 16315 16315 -0.060683814273261305 GGAGAHGT 8 Unmodified _GGAGAHGT_ 0 0 0 ENST00000225777.7_1_17:76168333-76168627:+|nuORF ENST00000225777.7_1_17:76168333-76168627:+|nuORF ENST00000225777.7_1_17:76168333-76168627:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1965026855469 2 314.145895 626.277237 NaN NaN NaN NaN NaN NaN NaN 26.528 1 24.893 24.393 25.393 -1.6347 0 0 0 0.2396 1 4406 4406 0.12286 0 1 16194 8144 10577 10580 16316 16316 -0.05085003644671815 GGAGAHGT 8 Unmodified _GGAGAHGT_ 0 0 0 ENST00000225777.7_1_17:76168333-76168627:+|nuORF ENST00000225777.7_1_17:76168333-76168627:+|nuORF ENST00000225777.7_1_17:76168333-76168627:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1442565917969 2 314.145895 626.277237 NaN NaN NaN NaN NaN NaN NaN 28.858 1 26.862 26.362 27.362 -1.9962 0 0 0 0.21486 1 4887 4887 0.69038 0 1 16195 8144 10577 10580 16317 16317 -0.05085003644671815 GGAGAHGT 8 Unmodified _GGAGAHGT_ 0 0 0 ENST00000225777.7_1_17:76168333-76168627:+|nuORF ENST00000225777.7_1_17:76168333-76168627:+|nuORF ENST00000225777.7_1_17:76168333-76168627:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1462097167969 2 314.145895 626.277237 NaN NaN NaN NaN NaN NaN NaN 45.115 1 42.368 41.868 42.868 -2.7475 0 0 0 0.21486 1 8181 8181 0.69038 0 1 16196 8144 10577 10580 16318 16318 -0.05085003644671815 GGAKGVNM 8 Unmodified _GGAKGVNM_ 0 0 0 REV__ENST00000412159.1_1_X:65719062-65719263:+|nuORF REV__ENST00000412159.1_1_X:65719062-65719263:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.1561584472656 2 367.186706 732.358859 NaN NaN NaN NaN NaN NaN NaN 41.692 1 39.058 38.558 39.558 -2.6348 0 0 0 0.23312 1 7790 7790 6.2058 2.9245 1 + 16197 21432 10578 10581 16319 16319 -0.01802644277086074 GGAKRQQEGL 10 Unmodified _GGAKRQQEGL_ 0 0 0 ENST00000597741.1_1_19:43967535-43969723:-|nuORF ENST00000597741.1_1_19:43967535-43969723:-|nuORF ENST00000597741.1_1_19:43967535-43969723:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.282470703125 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 150.74 1 146.01 145.51 146.51 -4.7323 0 0 0 0.22588 1 29942 29942 13.042 2.9685 1 16198 11676 10579 10582 16320 16320 0.032381890436681715 GGALTHRTC 9 Unmodified _GGALTHRTC_ 0 0 0 ENST00000373314.7_1_9:130267625-130268042:-|nuORF ENST00000373314.7_1_9:130267625-130268042:-|nuORF ENST00000373314.7_1_9:130267625-130268042:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22869873046875 2 458.226894 914.439234 NaN NaN NaN NaN NaN NaN NaN 25.267 1 23.732 23.232 24.232 -1.5342 0 0 0 0.19636 1 4145 4145 2.4985 0.59211 1 16199 9196 10580 10583 16321 16321 -0.0214078295401805 GGAMKRRR 8 Unmodified _GGAMKRRR_ 0 0 0 REV__ENST00000367590.8_1_1:180601157-180601193:+|nuORF REV__ENST00000367590.8_1_1:180601157-180601193:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.2088623046875 3 311.183739 930.529387 NaN NaN NaN NaN NaN NaN NaN 100.48 1 96.184 95.684 96.684 -4.297 0 0 0 0.21486 1 19221 19221 0.45834 0.057624 1 + 16200 20927 10581 10584 16322 16322 0.06134311165055806 GGAMKRRR 8 Unmodified _GGAMKRRR_ 0 0 0 REV__ENST00000367590.8_1_1:180601157-180601193:+|nuORF REV__ENST00000367590.8_1_1:180601157-180601193:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.18609619140625 3 311.183739 930.529387 NaN NaN NaN NaN NaN NaN NaN 108.58 1 104.13 103.63 104.63 -4.4518 0 0 0 0.21486 1 20841 20841 0.45834 0.057624 1 + 16201 20927 10581 10584 16323 16323 0.06134311165055806 GGCCCCCCW 9 Unmodified _GGCCCCCCW_ 0 0 0 MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 469.0974426269531 2 469.101232 936.187912 NaN NaN NaN NaN NaN NaN NaN 5.8879 1 5.2616 4.7616 5.7616 -0.62626 0 0 0 0.23508 1 371 371 0 0 1 16202 12148 10582 10585 16324 16324 -0.28273448569882476 GGCCCCCCW 9 Unmodified _GGCCCCCCW_ 0 0 0 MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 469.0803527832031 2 469.101232 936.187912 NaN NaN NaN NaN NaN NaN NaN 6.0276 1 5.4013 4.9013 5.9013 -0.62626 0 0 0 0.23508 1 399 399 0 0 1 16203 12148 10582 10585 16325 16325 -0.28273448569882476 GGCCCCCCW 9 Unmodified _GGCCCCCCW_ 0 0 0 MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 469.098876953125 2 469.101232 936.187912 NaN NaN NaN NaN NaN NaN NaN 16.85 1 15.634 15.134 16.134 -1.2159 0 0 0 0.23508 1 2673 2673 0 0 1 16204 12148 10582 10585 16326 16326 -0.28273448569882476 GGCCGSDY 8 Unmodified _GGCCGSDY_ 0 0 0 ENSG00000132589|ENST00000394908|FLOT2;ENST00000582174.5_1_17:27210248-27224592:-|nuORF ENSG00000132589|ENST00000394908|FLOT2 ENSG00000132589|ENST00000394908|FLOT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 762.2173461914062 1 761.222901 760.215625 -1.4146 -0.0010768 -3.1392 -0.0023896 -4.5538 -0.0034664 761.2220182719593 6.4786 0.78025 5.4638 4.9779 5.7582 -1.0148 36 21 2 0 0 0 0.89856 1 466 466 0 0 1 312810 16205 3744 10583 10586 16327 16327 -0.17407439450482798 GGCCGSDY 8 Unmodified _GGCCGSDY_ 0 0 0 ENSG00000132589|ENST00000394908|FLOT2;ENST00000582174.5_1_17:27210248-27224592:-|nuORF ENSG00000132589|ENST00000394908|FLOT2 ENSG00000132589|ENST00000394908|FLOT2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 761.222901 760.215625 -0.057691 -4.3916E-05 -5.7374 -0.0043675 -5.7951 -0.0044114 761.2196425781544 5.809 0.35026 5.1827 5.0093 5.3596 -0.62626 -0.14051 -0.001064 NaN 0 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 108300 16206 3744 10583 10586 -0.17407439450482798 GGCHGAAF 8 Unmodified _GGCHGAAF_ 0 0 0 REV__sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 REV__sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2080078125 2 360.150123 718.285694 NaN NaN NaN NaN NaN NaN NaN 50.792 1 47.74 47.24 48.24 -3.0517 0 0 0 0.2396 1 9343 9343 0.12286 0 1 + 16207 24700 10584 10587 16328 16328 -0.08471772999700988 GGCPAGPA 8 Unmodified _GGCPAGPA_ 0 0 0 nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant;ENST00000561518.5_2_16:2314685-2318034:-|nuORF;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8|DNAH14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.14031982421875 2 315.139224 628.263896 NaN NaN NaN NaN NaN NaN NaN 108.66 1 108.66 108.16 109.16 0 0 0 0 0.21486 1 21369 21369 2.8892 0 1 16208 7016;12518 10585 10588 16329 16329 -0.06510577748258584 GGDKNDTYYF 10 Unmodified _GGDKNDTYYF_ 0 0 0 REV__ENST00000367210.2_2_1:203771435-203771690:+|nuORF REV__ENST00000367210.2_2_1:203771435-203771690:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2595825195312 2 590.251286 1178.48802 NaN NaN NaN NaN NaN NaN NaN 71.652 1 68.025 67.525 68.525 -3.6275 0 0 0 0.22588 1 13517 13517 9.3831 2.0939 1 + 16209 20913 10586 10589 16330 16330 -0.09408635903969298 GGDMGLAT 8 Unmodified _GGDMGLAT_ 0 0 0 REV__ENST00000570069.5_1_16:1828464-1828845:+|nuORF REV__ENST00000570069.5_1_16:1828464-1828845:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1617431640625 2 361.162896 720.31124 NaN NaN NaN NaN NaN NaN NaN 134.56 1 129.92 129.42 130.42 -4.6399 0 0 0 0.21486 1 26535 26535 2.0598 1.2661 1 + 16210 23159 10587 10590 16331 16331 -0.060103432679397883 GGDPFWDGPG 10 Unmodified _GGDPFWDGPG_ 0 0 0 PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant;ENSG00000204569|ENST00000376511|PPP1R10 PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.0327453613281 3 335.47513 1003.40356 -0.3715 -0.00012463 2.4207 0.00081208 2.0492 0.00068745 335.4756250821736 24.067 0.23534 24.067 23.965 24.201 0 10 6 2 0 0 0 0.91149 1 4132 4132 0 0 1 255900 16211 7589 10588 10591 16332 16332 -0.09800541930042073 GGDPGCPA 8 Unmodified _GGDPGCPA_ 0 0 0 REV__ENSG00000189120|ENST00000536300|SP6 REV__ENSG00000189120|ENST00000536300|SP6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.8089294433594 2 337.134139 672.253725 NaN NaN NaN NaN NaN NaN NaN 52.44 1 52.44 51.94 52.94 0 0 0 0 0.2396 1 9968 9968 0.62683 0.50396 1 + 16212 19194 10589 10592 16333 16333 -0.09551185473503665 GGEALLHCTPP 11 Unmodified _GGEALLHCTPP_ 0 0 0 REV__ROBO3|p.P376Tfs*35|1|0.25|ENSG00000154134|chr11:124871098-124871099|-/C|frameshift_variant REV__ROBO3|p.P376Tfs*35|1|0.25|ENSG00000154134|chr11:124871098-124871099|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7859497070312 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 72.405 1 72.405 71.905 72.905 0 0 0 0 0.224 1 14040 14040 13.042 2.2185 1 + 16213 24574 10590 10593 16334 16334 -0.02039091296865081 GGEGDDSL 8 Unmodified _GGEGDDSL_ 0 0 0 REV__ENST00000467659.1_1_22:19026380-19028919:-|nuORF REV__ENST00000467659.1_1_22:19026380-19028919:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.14276123046875 2 375.15104 748.287527 NaN NaN NaN NaN NaN NaN NaN 72.88 1 69.342 68.842 69.842 -3.5385 0 0 0 0.21486 1 13822 13822 2.5775 0 1 + 16214 21983 10591 10594 16335 16335 -0.09668485500742463 GGEGSSDL 8 Unmodified _GGEGSSDL_ 0 0 0 ENST00000491556.1_3_3:113667391-113667634:+|nuORF ENST00000491556.1_3_3:113667391-113667634:+|nuORF ENST00000491556.1_3_3:113667391-113667634:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.1524353027344 2 361.153583 720.292613 NaN NaN NaN NaN NaN NaN NaN 115.64 1 115.64 115.14 116.14 0 0 0 0 0.21486 1 22760 22760 2.5775 0 1 16215 10529 10592 10595 16336 16336 -0.07872181638151687 GGEGSSDL 8 Unmodified _GGEGSSDL_ 0 0 0 ENST00000491556.1_3_3:113667391-113667634:+|nuORF ENST00000491556.1_3_3:113667391-113667634:+|nuORF ENST00000491556.1_3_3:113667391-113667634:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.2008972167969 2 361.153583 720.292613 NaN NaN NaN NaN NaN NaN NaN 122.43 1 117.88 117.38 118.38 -4.5476 0 0 0 0.23749 1 24135 24135 0.25148 0.12861 1 16216 10529 10592 10595 16337 16337 -0.07872181638151687 GGEQNGGM 8 Unmodified _GGEQNGGM_ 0 0 0 nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1 nc|ENSG00000132436|Q6PIW4-2|FIGNL1 nc|ENSG00000132436|Q6PIW4-2|FIGNL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21881103515625 2 375.147778 748.281002 NaN NaN NaN NaN NaN NaN NaN 75.251 1 71.528 71.028 72.028 -3.7227 0 0 0 0.23749 1 14232 14232 0.12286 0 1 16217 3726 10593 10596 16338 16338 -0.10320701933108012 GGERPWAT 8 Unmodified _GGERPWAT_ 0 0 0 REV__POMGNT2|p.E531Rfs*84|1|0.25|ENSG00000144647|chr3:43079841-43079841|C/-|frameshift_variant REV__POMGNT2|p.E531Rfs*84|1|0.25|ENSG00000144647|chr3:43079841-43079841|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2168273925781 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 106.66 1 102.57 102.07 103.07 -4.0913 0 0 0 0.21452 1 20509 20509 13.508 2.3934 1 + 16218 24495 10594 10597 16339 16339 -0.027245144849530334 GGFPHPAA 8 Unmodified _GGFPHPAA_ 0 0 0 ENSG00000106031|ENST00000649031|HOXA13 ENSG00000106031|ENST00000649031|HOXA13 ENSG00000106031|ENST00000649031|HOXA13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.1824035644531 2 377.187563 752.360573 0.13681 5.1602E-05 -0.27818 -0.00010493 -0.14137 -5.3323E-05 377.18742300078014 44.683 0.49612 44.683 44.459 44.955 0 17 13 2 0 0 0 8448 1 8345 8345 0.12286 0 1 1040500 16219 2360 10595 10598 16340 16340 -0.025512671968272116 GGGAAPTP 8 Unmodified _GGGAAPTP_ 0 0 0 REV__ENSG00000126246|ENST00000246532|IGFLR1 REV__ENSG00000126246|ENST00000246532|IGFLR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1537780761719 2 314.158471 626.30239 NaN NaN NaN NaN NaN NaN NaN 87.66 1 83.91 83.41 84.41 -3.7501 0 0 0 0.21486 1 16773 16773 5.7604 0 1 + 16220 15852 10596 10599 16341 16341 -0.02570948842094367 GGGAAPTP 8 Unmodified _GGGAAPTP_ 0 0 0 REV__ENSG00000126246|ENST00000246532|IGFLR1 REV__ENSG00000126246|ENST00000246532|IGFLR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.15972900390625 2 314.158471 626.30239 NaN NaN NaN NaN NaN NaN NaN 123.59 1 118.99 118.49 119.49 -4.5926 0 0 0 0.21486 1 23789 23789 2.5775 0 1 + 16221 15852 10596 10599 16342 16342 -0.02570948842094367 GGGAFAYYI 9 Unmodified _GGGAFAYYI_ 0 0 0 REV__ENSG00000256870|ENST00000536262|SLC5A8 REV__ENSG00000256870|ENST00000536262|SLC5A8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2390441894531 2 459.721436 917.428318 0.15106 6.9447E-05 0.79971 0.00036764 0.95077 0.00043709 459.72164565336436 87.428 0.45606 87.428 87.186 87.642 0 20 12 2 0 0 0 0.35556 1 17050 17050 12.241 0 1 1549200 + 16222 19868 10597 10600 16343 16343 -0.03369862056672446 GGGAFAYYI 9 Unmodified _GGGAFAYYI_ 0 0 0 REV__ENSG00000256870|ENST00000536262|SLC5A8 REV__ENSG00000256870|ENST00000536262|SLC5A8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 459.721436 917.428318 0.15106 6.9447E-05 0.79971 0.00036764 0.95077 0.00043709 459.72164565336436 87.428 0.45606 87.428 87.186 87.642 0 -0.025243 7.8036E-05 NaN 12.241 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1549200 + 16223 19868 10597 10600 -0.03369862056672446 GGGAFAYYI 9 Unmodified _GGGAFAYYI_ 0 0 0 REV__ENSG00000256870|ENST00000536262|SLC5A8 REV__ENSG00000256870|ENST00000536262|SLC5A8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.721436 917.428318 0.25538 0.0001174 0.65498 0.00030111 0.91036 0.00041851 459.7216190455053 91.573 0.51149 87.478 87.194 87.706 -4.0946 0.025243 -5.5035E-05 NaN 12.241 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1513000 + 16224 19868 10597 10600 -0.03369862056672446 GGGCSSGGAA 10 Unmodified _GGGCSSGGAA_ 0 0 0 SLC6A11|p.F358Lfs*31|1|0.55|ENSG00000132164|chr3:10918404-10918404|T/-|frameshift_variant;ENSG00000132164|ENST00000254488|SLC6A11;SLC6A11|p.Y157Tfs*2|2|0.23|ENSG00000132164|chr3:10819784-10819784|T/-|frameshift_variant;nc|ENSG00000132164|P48066-2|SLC6A11 SLC6A11|p.F358Lfs*31|1|0.55|ENSG00000132164|chr3:10918404-10918404|T/-|frameshift_variant SLC6A11|p.F358Lfs*31|1|0.55|ENSG00000132164|chr3:10918404-10918404|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.138427734375 2 362.139953 722.265352 NaN NaN NaN NaN NaN NaN NaN 111.48 1 111.48 110.98 111.98 0 0 0 0 2.8426 1 21928 21928 1.9275 1.5192 1 16225 3707 10598 10601 16344 16344 -0.10688988450158377 GGGDGSAY 8 Unmodified _GGGDGSAY_ 0 0 0 ENST00000561288.1_1_15:58889677-59041905:-|nuORF ENST00000561288.1_1_15:58889677-59041905:-|nuORF ENST00000561288.1_1_15:58889677-59041905:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.133544921875 2 342.135193 682.255833 NaN NaN NaN NaN NaN NaN NaN 54.596 1 51.458 50.958 51.958 -3.1377 0 0 0 0.2396 1 10109 10109 0.049793 0 1 16226 11300 10599 10602 16345 16345 -0.09800433464056368 GGGDGSAY 8 Unmodified _GGGDGSAY_ 0 0 0 ENST00000561288.1_1_15:58889677-59041905:-|nuORF ENST00000561288.1_1_15:58889677-59041905:-|nuORF ENST00000561288.1_1_15:58889677-59041905:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.1338806152344 2 342.135193 682.255833 NaN NaN NaN NaN NaN NaN NaN 55.449 1 52.311 51.811 52.811 -3.1377 0 0 0 0.2396 1 10294 10294 0.049793 0 1 16227 11300 10599 10602 16346 16346 -0.09800433464056368 GGGGFGHL 8 Unmodified _GGGGFGHL_ 0 0 0 REV__ENST00000529308.5_2_11:77925304-77925502:+|nuORF REV__ENST00000529308.5_2_11:77925304-77925502:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.1708984375 2 351.171913 700.329273 NaN NaN NaN NaN NaN NaN NaN 47.859 1 44.99 44.49 45.49 -2.869 0 0 0 0.23711 1 9049 9049 1.7423 0.41274 1 + 16228 22743 10600 10603 16347 16347 -0.03287840230916572 GGGGGAKQ 8 Unmodified _GGGGGAKQ_ 0 0 0 nc|ENSG00000101746|O94818-2|NOL4;ENSG00000101746|ENST00000261592|NOL4;NOL4|p.R71H|1|0.32|ENSG00000101746|chr18:34223042-34223042|C/T|missense_variant nc|ENSG00000101746|O94818-2|NOL4 nc|ENSG00000101746|O94818-2|NOL4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1604919433594 2 316.161545 630.308538 NaN NaN NaN NaN NaN NaN NaN 18.691 1 17.365 16.865 17.865 -1.3251 0 0 0 0.2396 1 2817 2817 0.12286 0 1 16229 2082 10601 10604 16348 16348 -0.021404306105750948 GGGGGCCCG 9 Unmodified _GGGGGCCCG_ 0 0 0 ENST00000431489.5_1_2:62932928-62934072:+|nuORF ENST00000431489.5_1_2:62932928-62934072:+|nuORF ENST00000431489.5_1_2:62932928-62934072:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 671.17333984375 1 670.174177 669.1669 -0.77404 -0.00051874 -0.35371 -0.00023705 -1.1277 -0.00075579 670.1755190468555 19.4 1.0365 17.765 17.462 18.498 -1.6351 47 29 2 0 0 0 0.83871 1 3032 3032 0 0 1 609690 16230 9785 10602 10605 16349 16349 -0.1809163129122453 GGGGGDDNC 9 Unmodified _GGGGGDDNC_ 0 0 0 REV__nc|ENSG00000143322|P42684-2|ABL2 REV__nc|ENSG00000143322|P42684-2|ABL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.1173400878906 2 376.119217 750.223881 NaN NaN NaN NaN NaN NaN NaN 5.2278 1 4.6015 4.1015 5.1015 -0.62626 0 0 0 0.23508 1 241 241 0 0 1 + 16231 16714 10603 10606 16350 16350 -0.16122169209495496 GGGGGDDNC 9 Unmodified _GGGGGDDNC_ 0 0 0 REV__nc|ENSG00000143322|P42684-2|ABL2 REV__nc|ENSG00000143322|P42684-2|ABL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.11761474609375 2 376.119217 750.223881 NaN NaN NaN NaN NaN NaN NaN 5.6775 1 5.0512 4.5512 5.5512 -0.62626 0 0 0 0.23508 1 329 329 0 0 1 + 16232 16714 10603 10606 16351 16351 -0.16122169209495496 GGGGGDDNC 9 Unmodified _GGGGGDDNC_ 0 0 0 REV__nc|ENSG00000143322|P42684-2|ABL2 REV__nc|ENSG00000143322|P42684-2|ABL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.1175842285156 2 376.119217 750.223881 NaN NaN NaN NaN NaN NaN NaN 7.2275 1 6.5484 6.0484 7.0484 -0.67913 0 0 0 0.23508 1 635 635 0 0 1 + 16233 16714 10603 10606 16352 16352 -0.16122169209495496 GGGGGDDNC 9 Unmodified _GGGGGDDNC_ 0 0 0 REV__nc|ENSG00000143322|P42684-2|ABL2 REV__nc|ENSG00000143322|P42684-2|ABL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.11798095703125 2 376.119217 750.223881 NaN NaN NaN NaN NaN NaN NaN 28.494 1 26.739 26.239 27.239 -1.7552 0 0 0 0.23508 1 4812 4812 0 0 1 + 16234 16714 10603 10606 16353 16353 -0.16122169209495496 GGGGGGGD 8 Unmodified _GGGGGGGD_ 0 0 0 HOXB3|p.P365Lfs*64|1|0.46|ENSG00000120093|chr17:48550536-48550536|G/-|frameshift_variant;ENSG00000120093|ENST00000498678|HOXB3;ENSG00000184486|ENST00000328345|POU3F2;DOC2A|p.E51D|1|0.17|ENSG00000149927|chr16:30010070-30010070|C/A|missense_variant;ENSG00000138795|ENST00000265165|LEF1;ANKRD17|p.G106D|1|0.35|ENSG00000132466|chr4:73258352-73258352|C/T|missense_variant;nc|ENSG00000138795|Q9UJU2-6|LEF1;ENST00000299633.6_1_15:83876364-83876475:-|nuORF;ENST00000479412.2_1_1:120611949-120612105:-|nuORF;ENST00000470900.1_1_3:51422898-51423054:+|nuORF;ENST00000256646.6_1_1:120572588-120612105:-|nuORF;ENST00000362074.7_1_1:145209278-145248834:+|nuORF;HOXB3|p.G258Afs*19|1|0.1|ENSG00000120093|chr17:48550857-48550857|C/-|frameshift_variant;nc|ENSG00000120093|P14651-2|HOXB3;nc|ENSG00000138795|Q9UJU2-5|LEF1;nc|ENSG00000286219|P0DPK4|NOTCH2NLC;nc|ENSG00000120093|P14651-3|HOXB3;LEF1|p.R296Dfs*8|1|0.29|ENSG00000138795|chr4:108078342-108078342|T/-|frameshift_variant;nc|ENSG00000138795|Q9UJU2-2|LEF1;ENSG00000206418|ENST00000649141|RAB12;POU3F2|p.A368Lfs*31|1|0.23|ENSG00000184486|chr6:98835971-98835971|G/-|frameshift_variant;ENSG00000169857|ENST00000306730|AVEN REV__ENSG00000100599|ENST00000216487|RIN3;REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant;REV__nc|ENSG00000166912|Q9NXD2-2|MTMR10;REV__ENSG00000205922|ENST00000382349|ONECUT3;REV__HCN1|p.T196Yfs*20|1|0.06|ENSG00000164588|chr5:45645448-45645449|-/GGATTATA|frameshift_variant;ENSG00000169857|ENST00000306730|AVEN;REV__ENSG00000121871|ENST00000475390|SLITRK3 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2727661132812 1 533.19503 532.187754 0.48394 0.00025804 -4.2195 -0.0022498 -3.7355 -0.0019918 533.1934261227107 118.27 0.18069 113.86 113.78 113.96 -4.4088 5 4 2 0 0 0 1.028 1 22778 22778 0 0 1 656170 16235 16781;19606;17692;14724;17889;6012;15667 10604 10607 16354 16354 -0.09705258324038368 GGGGGGGGTA 10 Unmodified _GGGGGGGGTA_ 0 0 0 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.14837646484375 2 324.14081 646.267067 -0.24881 -8.065E-05 3.3246 0.0010776 3.0758 0.000997 324.1431027568327 99.077 0.69297 99.077 98.753 99.446 0 31 19 3 0 0 0 0.53093 1 19476 19476 0.043787 0 1 1395500 16236 3423 10605 10608 16355 16355 -0.07021611369907532 GGGGGGNF 8 Unmodified _GGGGGGNF_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7601928710938 1 622.257965 621.250688 0.39609 0.00024647 -3.4253 -0.0021314 -3.0292 -0.0018849 622.2552195085623 125.1 0.14088 125.1 125.04 125.18 0 5 3 2 0 0 0 0.9003 1 24681 24681 0.049793 0.023587 1 927000 16237 2532 10606 10609 16356 16356 -0.07508692535998307 GGGGLSFG 8 Unmodified _GGGGLSFG_ 0 0 0 REV__ENST00000575991.1_1_17:5185584-5185713:+|nuORF REV__ENST00000575991.1_1_17:5185584-5185713:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.6961364746094 2 326.158471 650.30239 NaN NaN NaN NaN NaN NaN NaN 97.477 1 97.477 96.977 97.977 0 0 0 0 0.2396 1 19104 19104 0.13829 0 1 + 16238 23207 10607 10610 16357 16357 -0.03674948842080994 GGGGPGCP 8 Unmodified _GGGGPGCP_ 0 0 0 REV__ENSG00000047188|ENST00000161863|YTHDC2 REV__ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.28076171875 1 601.239872 600.232595 0.44305 0.00026638 -4.3687 -0.0026267 -3.9257 -0.0023603 601.2339978998542 151.97 0.1387 146.8 146.73 146.87 -5.1759 5 3 2 0 0 0 8448 1 29457 29457 0 0 1 1001400 + 16239 14058 10608 10611 16358 16358 -0.08351150782368677 GGGHYNSFS 9 Unmodified _GGGHYNSFS_ 0 0 0 nc|ENSG00000009780|Q8TAV0-5|FAM76A;nc|ENSG00000009780|Q8TAV0-2|FAM76A;nc|ENSG00000009780|Q8TAV0-4|FAM76A nc|ENSG00000009780|Q8TAV0-5|FAM76A nc|ENSG00000009780|Q8TAV0-5|FAM76A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 309.13262939453125 3 309.131475 924.372594 NaN NaN NaN NaN NaN NaN NaN 141.56 1 136.57 136.07 137.07 -4.9877 0 0 0 0.23508 1 27263 27263 0.26902 0.033176 1 16240 12207 10609 10612 16359 16359 -0.0926169524427678 GGGHYNSFS 9 Unmodified _GGGHYNSFS_ 0 0 0 nc|ENSG00000009780|Q8TAV0-5|FAM76A;nc|ENSG00000009780|Q8TAV0-2|FAM76A;nc|ENSG00000009780|Q8TAV0-4|FAM76A nc|ENSG00000009780|Q8TAV0-5|FAM76A nc|ENSG00000009780|Q8TAV0-5|FAM76A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 309.13330078125 3 309.131475 924.372594 NaN NaN NaN NaN NaN NaN NaN 141.8 1 136.82 136.32 137.32 -4.9877 0 0 0 0.23508 1 27315 27315 0.26902 0.033176 1 16241 12207 10609 10612 16360 16360 -0.0926169524427678 GGGKKHGP 8 Unmodified _GGGKKHGP_ 0 0 0 sp|F5HBX1|CXCL1_HCMVMChemokinevCXCL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL146PE=1SV=1 sp|F5HBX1|CXCL1_HCMVMChemokinevCXCL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL146PE=1SV=1 sp|F5HBX1|CXCL1_HCMVMChemokinevCXCL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL146PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 369.2050476074219 2 369.206287 736.398021 NaN NaN NaN NaN NaN NaN NaN 105.78 1 101.52 101.02 102.02 -4.2638 0 0 0 0.2396 1 20822 20822 0.30703 0 1 16242 25719 10610 10613 16361 16361 0.01927824068798145 GGGPCDCF 8 Unmodified _GGGPCDCF_ 0 0 0 REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1 REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 756.2486572265625 1 755.248722 754.241446 -0.43824 -0.00033098 -2.0344 -0.0015365 -2.4726 -0.0018674 755.2479944130331 7.3572 1.5143 6.3126 5.5152 7.0295 -1.0446 50 43 2 0 0 0 0.89856 1 680 680 0 0 1 139630 + 16243 24707 10611 10614 16362 16362 -0.14550545208192034 GGGPCDCF 8 Unmodified _GGGPCDCF_ 0 0 0 REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1 REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 755.757080078125 1 755.248722 754.241446 -1.4132 -0.0010673 -1.1125 -0.00084018 -2.5256 -0.0019075 755.2489100478341 10.237 0.51697 9.1707 9.0451 9.5621 -1.0664 22 14 2 0 0 0 0.9003 1 1132 1132 0 0 1 217910 + 16244 24707 10611 10614 16363 16363 -0.14550545208192034 GGGPCDCF 8 Unmodified _GGGPCDCF_ 0 0 0 REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1 REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 755.248722 754.241446 -0.43824 -0.00033098 -2.0344 -0.0015365 -2.4726 -0.0018674 755.2479944130331 7.3572 1.5143 6.3126 5.5152 7.0295 -1.0446 0 0 NaN 0 50 43 2 NaN NaN NaN NaN 0 NaN NaN 0 139630 + 16245 24707 10611 10614 -0.14550545208192034 GGGPQHKL 8 Unmodified _GGGPQHKL_ 0 0 0 REV__ENST00000570299.5_1_17:44039703-44096001:+|nuORF REV__ENST00000570299.5_1_17:44039703-44096001:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 397.2210998535156 2 397.219395 792.424236 NaN NaN NaN NaN NaN NaN NaN 49.006 1 46.007 45.507 46.507 -2.999 0 0 0 0.21486 1 8954 8954 5.7604 0 1 + 16246 19061 10612 10615 16364 16364 0.01972093240283357 GGGTGGAG 8 Unmodified _GGGTGGAG_ 0 0 0 HOXC13|p.T113Pfs*26|1|0.14|ENSG00000123364|chr12:53939237-53939237|C/-|frameshift_variant;ENSG00000123364|ENST00000243056|HOXC13 HOXC13|p.T113Pfs*26|1|0.14|ENSG00000123364|chr12:53939237-53939237|C/-|frameshift_variant HOXC13|p.T113Pfs*26|1|0.14|ENSG00000123364|chr12:53939237-53939237|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.275390625 1 533.231416 532.224139 0.095979 5.1179E-05 -3.5722 -0.0019048 -3.4762 -0.0018536 533.2345819211475 114.98 0.17152 114.98 114.86 115.03 0 5 4 2 0 0 0 0.89926 1 22600 22600 0.30703 0 1 393140 16247 3263 10613 10616 16365 16365 -0.06068381427337499 GGGVRQSATP 10 Unmodified _GGGVRQSATP_ 0 0 0 REV__ENST00000525484.5_1_11:8986226-8986655:+|nuORF REV__ENST00000525484.5_1_11:8986226-8986655:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2419738769531 2 465.243598 928.472643 NaN NaN NaN NaN NaN NaN NaN 47.751 1 44.801 44.301 45.301 -2.9499 0 0 0 2.8426 1 8726 8726 1.9275 0 1 + 16248 22682 10614 10617 16366 16366 0.0055454208951459805 GGGWSAGM 8 Unmodified _GGGWSAGM_ 0 0 0 ENST00000491615.5_1_13:51102044-51102324:+|nuORF ENST00000491615.5_1_13:51102044-51102324:+|nuORF ENST00000491615.5_1_13:51102044-51102324:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.1764221191406 2 361.649956 721.285359 -0.21802 -7.8846E-05 -0.30543 -0.00011046 -0.52345 -0.00018931 361.6497898088449 31.954 0.66056 31.954 31.6 32.261 0 30 18 2 0 0 0 8448 1 5825 5825 1.3295 1.3295 1 2208000 16249 10530 10615 10618 16367 16367 -0.08643192719546278 GGGWSAGM 8 Unmodified _GGGWSAGM_ 0 0 0 ENST00000491615.5_1_13:51102044-51102324:+|nuORF ENST00000491615.5_1_13:51102044-51102324:+|nuORF ENST00000491615.5_1_13:51102044-51102324:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 361.649956 721.285359 -0.36863 -0.00013332 0.18775 6.7902E-05 -0.18088 -6.5414E-05 361.6501132236898 34.153 0.52054 31.836 31.563 32.083 -2.3175 -0.057697 8.0001E-05 NaN 1.3295 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2768700 16250 10530 10615 10618 -0.08643192719546278 GGGWSAGM 8 Unmodified _GGGWSAGM_ 0 0 0 ENST00000491615.5_1_13:51102044-51102324:+|nuORF ENST00000491615.5_1_13:51102044-51102324:+|nuORF ENST00000491615.5_1_13:51102044-51102324:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 361.649956 721.285359 0.20737 7.4994E-05 0.016796 6.0742E-06 0.22416 8.1068E-05 361.6498833886833 34.053 0.51822 31.906 31.6 32.118 -2.1468 0.012471 -4.3654E-05 NaN 1.3295 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1402800 16251 10530 10615 10618 -0.08643192719546278 GGGWSAGM 8 Unmodified _GGGWSAGM_ 0 0 0 ENST00000491615.5_1_13:51102044-51102324:+|nuORF ENST00000491615.5_1_13:51102044-51102324:+|nuORF ENST00000491615.5_1_13:51102044-51102324:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 361.649956 721.285359 -0.30736 -0.00011116 0.35049 0.00012676 0.043129 1.5598E-05 361.65005152990096 34.094 0.52643 31.879 31.562 32.088 -2.2158 -0.015003 0.00019771 NaN 1.3295 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1188300 16252 10530 10615 10618 -0.08643192719546278 GGHKIGND 8 Unmodified _GGHKIGND_ 0 0 0 REV__nc|ENSG00000128573|O15409-2|FOXP2 REV__nc|ENSG00000128573|O15409-2|FOXP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 399.1983947753906 2 399.198659 796.382765 NaN NaN NaN NaN NaN NaN NaN 119.23 1 114.76 114.26 115.26 -4.467 0 0 0 0.21486 1 22949 22949 2.3027 0 1 + 16253 15925 10616 10619 16368 16368 -0.023570875190557672 GGIRNMGG 8 Unmodified _GGIRNMGG_ 0 0 0 REV__MYEF2|p.P369S|1|0.06|ENSG00000104177|chr15:48152267-48152267|G/A|missense_variant REV__MYEF2|p.P369S|1|0.06|ENSG00000104177|chr15:48152267-48152267|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2188415527344 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 58.881 1 55.97 55.47 56.47 -2.9105 0 0 0 0.23899 1 11311 11311 1.3295 0 1 + 16254 14908 10617 10620 16369 16369 -0.024761260455420597 GGKGKGSK 8 Unmodified _GGKGKGSK_ 0 0 0 REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21624755859375 2 359.713945 717.413337 -0.2559 -9.2052E-05 -1.08 -0.00038848 -1.3359 -0.00048053 359.7134917925248 116.01 0.79687 116.01 115.63 116.42 0 43 22 2 0 0 0 0.89856 3 22788 22788;22839;22881 0 0 1 6998100 + 16255 14841 10618 10621 16370;16371;16372 16370 0.04332690865987843 GGKGKGSK 8 Unmodified _GGKGKGSK_ 0 0 0 REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2020263671875 2 359.713945 717.413337 -0.2559 -9.2052E-05 -1.08 -0.00038848 -1.3359 -0.00048053 359.7134917925248 116.01 0.79687 116.01 115.63 116.42 0 43 22 2 0 0 0 1.0282 1 22912 22912 0 0 1 6998100 + 16256 14841 10618 10621 16373 16373 0.04332690865987843 GGKGKGSK 8 Unmodified _GGKGKGSK_ 0 0 0 REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2154541015625 2 359.713945 717.413337 -0.0036455 -1.3114E-06 -1.245 -0.00044785 -1.2487 -0.00044916 359.7133649277226 120.69 0.63592 116.17 115.88 116.52 -4.5221 28 17 2 0 0 0 0.89856 2 23793 23793;23840 0 0 1 2165100 + 16257 14841 10618 10621 16374;16375 16374 0.04332690865987843 GGKGKGSK 8 Unmodified _GGKGKGSK_ 0 0 0 REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018737792969 2 359.713945 717.413337 -0.0036455 -1.3114E-06 -1.245 -0.00044785 -1.2487 -0.00044916 359.7133649277226 120.69 0.63592 116.17 115.88 116.52 -4.5221 28 17 2 0 0 0 1.028 1 23766 23766 0 0 1 2165100 + 16258 14841 10618 10621 16376 16376 0.04332690865987843 GGKGKGSK 8 Unmodified _GGKGKGSK_ 0 0 0 REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2154235839844 2 359.713945 717.413337 -0.32875 -0.00011826 -0.80759 -0.0002905 -1.1363 -0.00040876 359.71356812845056 120.65 0.6089 116.18 115.92 116.53 -4.467 28 16 2 0 0 0 0.89856 3 23215 23215;23254;23270 0 0 1 2747000 + 16259 14841 10618 10621 16377;16378;16379 16377 0.04332690865987843 GGKGKGSK 8 Unmodified _GGKGKGSK_ 0 0 0 REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 359.713945 717.413337 -0.32875 -0.00011826 -0.80759 -0.0002905 -1.1363 -0.00040876 359.71356812845056 120.65 0.6089 116.18 115.92 116.53 -4.467 0.062348 0.00019471 NaN 0 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2747000 + 16260 14841 10618 10621 0.04332690865987843 GGKTGGGPRQ 10 Unmodified _GGKTGGGPRQ_ 0 0 0 ENST00000557957.5_1_15:85523767-85607601:+|nuORF ENST00000557957.5_1_15:85523767-85607601:+|nuORF ENST00000557957.5_1_15:85523767-85607601:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22503662109375 2 457.743765 913.472977 NaN NaN NaN NaN NaN NaN NaN 26.76 1 25.125 24.625 25.625 -1.6347 0 0 0 2.8426 1 4454 4454 0.063865 0 1 16261 11260 10619 10622 16380 16380 0.012779618093759382 GGLLTKFL 8 Unmodified _GGLLTKFL_ 0 0 0 REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3 REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2452697753906 2 424.765646 847.516739 0.55717 0.00023667 -0.20055 -8.5186E-05 0.35662 0.00015148 424.7654773631177 22.875 0.27435 21.321 21.132 21.407 -1.5532 10 7 2 0 0 0 0.89926 1 3908 3908 1.3295 0 1 210760 + 16262 18152 10620 10623 16381 16381 0.08688178253783008 GGLPQPSPIP 10 Unmodified _GGLPQPSPIP_ 0 0 0 REV__nc|ENSG00000213658|O43561-4|LAT REV__nc|ENSG00000213658|O43561-4|LAT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7697448730469 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 116.88 1 116.88 116.38 117.38 0 0 0 0 0.21103 1 23018 23018 26.268 2.2476 1 + 16263 24265 10621 10624 16382 16382 0.04098071414523474 GGLPQPSPIP 10 Unmodified _GGLPQPSPIP_ 0 0 0 REV__nc|ENSG00000213658|O43561-4|LAT REV__nc|ENSG00000213658|O43561-4|LAT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.768798828125 2 481.768917 961.523281 0.27876 0.0001343 0.010401 5.0109E-06 0.28916 0.00013931 481.7688385227152 121.7 0.92487 117.15 116.64 117.56 -4.5476 70 25 4 0 0 0 0.32088 1 23910 23910 36.127 9.2434 1 33535000 + 16264 24265 10621 10624 16383 16383 0.04098071414523474 GGLPQPSPIP 10 Unmodified _GGLPQPSPIP_ 0 0 0 REV__nc|ENSG00000213658|O43561-4|LAT REV__nc|ENSG00000213658|O43561-4|LAT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7708740234375 2 481.768917 961.523281 0.24922 0.00012007 0.020002 9.6364E-06 0.26922 0.0001297 481.76883045939104 121.63 1.0147 117.1 116.61 117.62 -4.5305 75 27 4 0 0 0 0.42569 1 23331 23331 29.082 5.9332 1 20530000 + 16265 24265 10621 10624 16384 16384 0.04098071414523474 GGLRRRRRRRR 11 Unmodified _GGLRRRRRRRR_ 0 0 0 REV__ENSG00000170214|ENST00000306675|ADRA1B REV__ENSG00000170214|ENST00000306675|ADRA1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 747.97900390625 2 747.980499 1493.94644 NaN NaN NaN NaN NaN NaN NaN 175.23 1 170.34 169.84 170.84 -4.8845 0 0 0 0.23698 1 34845 34845 0.30703 0 1 + 16266 18147 10622 10625 16385 16385 0.2192289743040874 GGMRPVELG 9 Unmodified _GGMRPVELG_ 0 0 0 REV__ENST00000325980.9_1_10:135054694-135055015:+|nuORF REV__ENST00000325980.9_1_10:135054694-135055015:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24139404296875 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 94.209 1 90.065 89.565 90.565 -4.1435 0 0 0 0.22621 1 17968 17968 15.847 1.2655 1 + 16267 20577 10623 10626 16386 16386 0.003732718485480291 GGNNESAA 8 Unmodified _GGNNESAA_ 0 0 0 REV__PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant REV__PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.213623046875 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 13.976 1 12.804 12.304 13.304 -1.173 0 0 0 0.2396 1 1857 1857 0.30703 0 1 + 16268 19838 10624 10627 16387 16387 -0.08221646061053889 GGNNESAA 8 Unmodified _GGNNESAA_ 0 0 0 REV__PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant REV__PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2138671875 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 14.201 1 13.028 12.528 13.528 -1.173 0 0 0 0.2396 1 1905 1905 0.30703 0 1 + 16269 19838 10624 10627 16388 16388 -0.08221646061053889 GGNNESAA 8 Unmodified _GGNNESAA_ 0 0 0 REV__PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant REV__PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2106018066406 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 15.287 1 14.065 13.565 14.565 -1.2219 0 0 0 0.2396 1 2129 2129 0.30703 0 1 + 16270 19838 10624 10627 16389 16389 -0.08221646061053889 GGNNESAA 8 Unmodified _GGNNESAA_ 0 0 0 REV__PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant REV__PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2111511230469 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 15.24 1 13.887 13.387 14.387 -1.3534 0 0 0 0.2396 1 2085 2085 0.30703 0 1 + 16271 19838 10624 10627 16390 16390 -0.08221646061053889 GGNVWLSPV 9 Unmodified _GGNVWLSPV_ 0 0 0 nc|ENSG00000159267|P50747|HLCS;ENSG00000159267|ENST00000674895|HLCS nc|ENSG00000159267|P50747|HLCS nc|ENSG00000159267|P50747|HLCS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24090576171875 2 464.747985 927.481417 0.019217 8.9312E-06 -2.7405 -0.0012737 -2.7213 -0.0012647 464.74575053579446 42.233 0.8832 39.627 38.98 39.863 -2.606 51 24 3 0 0 0 0.31728 1 7556 7556 10.899 0 1 4717600 16272 5200 10625 10628 16391 16391 0.014775157260032756 GGPAELSTAA 10 Unmodified _GGPAELSTAA_ 0 0 0 REV__ENST00000292174.4_1_11:118754485-118754617:+|nuORF REV__ENST00000292174.4_1_11:118754485-118754617:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21844482421875 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 34.296 1 32.081 31.581 32.581 -2.2158 0 0 0 0.22588 1 6006 6006 6.7232 0 1 + 16273 20356 10626 10629 16392 16392 -0.017353712702515622 GGPAMTPP 8 Unmodified _GGPAMTPP_ 0 0 0 ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.9897766113281 2 364.175807 726.337061 NaN NaN NaN NaN NaN NaN NaN 104.66 1 100.44 99.942 100.94 -4.2183 0 0 0 0.23711 1 20591 20591 0.063987 0 1 16274 7279 10627 10630 16393 16393 -0.037054490256537065 GGPEWEMLY 9 Unmodified _GGPEWEMLY_ 0 0 0 REV__ENST00000458060.1_1_6:29974304-29974643:-|nuORF REV__ENST00000458060.1_1_6:29974304-29974643:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2791137695312 2 541.236593 1080.45863 NaN NaN NaN NaN NaN NaN NaN 46.776 1 46.776 46.276 47.276 0 0 0 0 0.23508 1 8815 8815 8.5933 1.8701 1 + 16275 21862 10628 10631 16394 16394 -0.07837871453784828 GGPHGFNK 8 Unmodified _GGPHGFNK_ 0 0 0 REV__UNC79|p.K1493Sfs*12|1|0.52|ENSG00000133958|chr14:93621704-93621704|A/-|frameshift_variant REV__UNC79|p.K1493Sfs*12|1|0.52|ENSG00000133958|chr14:93621704-93621704|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 407.25079345703125 2 407.203744 812.392936 NaN NaN NaN NaN NaN NaN NaN 154.58 1 149.8 149.3 150.3 -4.7791 0 0 0 0.21486 1 30727 30727 2.8892 0.82947 1 + 16276 16183 10629 10632 16395 16395 -0.020764797938227275 GGPKLLSA 8 Unmodified _GGPKLLSA_ 0 0 0 REV__nc|ENSG00000241644|O95050-2|INMT REV__nc|ENSG00000241644|O95050-2|INMT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3935546875 1 742.445766 741.438489 0.27702 0.00020567 0.50088 0.00037188 0.77791 0.00057755 742.4459278910713 51.123 0.45949 48.078 47.909 48.368 -3.0453 20 12 2 0 0 0 0.0942 1 9398 9398 64.236 19.829 1 1739300 + 16277 19786 10630 10633 16396 16396 0.05742745668567295 GGPKLLSA 8 Unmodified _GGPKLLSA_ 0 0 0 REV__nc|ENSG00000241644|O95050-2|INMT REV__nc|ENSG00000241644|O95050-2|INMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 742.445766 741.438489 0.76308 0.00056655 0.035123 2.6077E-05 0.79821 0.00059262 742.4456302225145 48.202 0.52354 48.202 47.965 48.488 0 0.10384 -0.00014555 NaN 64.236 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2277400 + 16278 19786 10630 10633 0.05742745668567295 GGPKLLSA 8 Unmodified _GGPKLLSA_ 0 0 0 REV__nc|ENSG00000241644|O95050-2|INMT REV__nc|ENSG00000241644|O95050-2|INMT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 742.445766 741.438489 0.49493 0.00036746 -0.017174 -1.2751E-05 0.47775 0.00035471 742.4457278886568 50.978 0.49254 48.095 47.856 48.348 -2.8824 -0.0028585 -0.00018438 NaN 64.236 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1849700 + 16279 19786 10630 10633 0.05742745668567295 GGPKLLSA 8 Unmodified _GGPKLLSA_ 0 0 0 REV__nc|ENSG00000241644|O95050-2|INMT REV__nc|ENSG00000241644|O95050-2|INMT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 742.445766 741.438489 0.27702 0.00020567 0.50088 0.00037188 0.77791 0.00057755 742.4459278910713 51.123 0.45949 48.078 47.909 48.368 -3.0453 -0.020155 0.00020025 NaN 64.236 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1739300 + 16280 19786 10630 10633 0.05742745668567295 GGPKLLSA 8 Unmodified _GGPKLLSA_ 0 0 0 REV__nc|ENSG00000241644|O95050-2|INMT REV__nc|ENSG00000241644|O95050-2|INMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 742.445766 741.438489 0.13624 0.00010115 0.43821 0.00032535 0.57445 0.0004265 742.4460881368766 51.069 0.56051 48.017 47.82 48.38 -3.0517 -0.080824 0.00015372 NaN 64.236 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1706600 + 16281 19786 10630 10633 0.05742745668567295 GGPLEPFWAL 10 Unmodified _GGPLEPFWAL_ 0 0 0 ENSG00000139531|ENST00000266971|SUOX;SUOX|p.P200Lfs*4|1|0.11|ENSG00000139531|chr12:56003984-56003984|C/-|frameshift_variant ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7869262695312 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 173.5 1 168.71 168.21 169.21 -4.7898 0 0 0 2.8426 1 35397 35397 6.6304 5.7552 1 16282 4252 10631 10634 16397 16397 0.01522644448596111 GGPLKGGGL 9 Unmodified _GGPLKGGGL_ 0 0 0 REV__ENST00000439473.5_1_7:102916053-102920599:-|nuORF REV__ENST00000439473.5_1_7:102916053-102920599:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.20147705078125 2 378.224146 754.433738 NaN NaN NaN NaN NaN NaN NaN 13.882 1 12.767 12.267 13.267 -1.1142 0 0 0 0.19635 1 2043 2043 0 0 1 + 16283 20496 10632 10635 16398 16398 0.04669861525826491 GGPPPGAA 8 Unmodified _GGPPPGAA_ 0 0 0 ENST00000568717.1_1_16:74330754-74333518:+|nuORF;ENST00000219313.8_1_16:74330754-74334081:+|nuORF ENST00000568717.1_1_16:74330754-74333518:+|nuORF ENST00000568717.1_1_16:74330754-74333518:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7725219726562 1 623.314751 622.307475 0.88857 0.00055386 -0.88684 -0.00055278 0.0017321 1.0796E-06 623.3141439757852 114.24 0.56402 109.76 109.47 110.04 -4.4726 21 15 2 0 0 0 0.89951 1 22564 22564 0.62683 0.50396 1 1812800 16284 8128 10633 10636 16399 16399 -0.018786449794788496 GGPPRHTAH 9 Unmodified _GGPPRHTAH_ 0 0 0 ENST00000424161.5_1_22:28390471-28393540:+|nuORF ENST00000424161.5_1_22:28390471-28393540:+|nuORF ENST00000424161.5_1_22:28390471-28393540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2486267089844 2 465.23865 928.462747 NaN NaN NaN NaN NaN NaN NaN 44.493 1 41.703 41.203 42.203 -2.79 0 0 0 0.19652 1 8362 8362 0.073264 0 1 16285 9698 10634 10637 16400 16400 -0.004346011251982418 GGQCLGPVAQ 10 Unmodified _GGQCLGPVAQ_ 0 0 0 REV__FBN3|p.G754Afs*23|1|0.5|ENSG00000142449|chr19:8129065-8129065|G/-|frameshift_variant REV__FBN3|p.G754Afs*23|1|0.5|ENSG00000142449|chr19:8129065-8129065|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2460021972656 2 465.229102 928.443651 0.42629 0.00019832 -0.86473 -0.0004023 -0.43844 -0.00020398 465.2287087278354 30.287 3.6587 28.17 26.854 30.513 -2.1167 248 103 3 0 0 0 0.28382 1 5251 5251 3.104 0 1 15726000 + 16286 16672 10635 10638 16401 16401 -0.023433185311318994 GGQGKGGA 8 Unmodified _GGQGKGGA_ 0 0 0 ENSG00000188779|ENST00000380035|SKOR1 ENSG00000188779|ENST00000380035|SKOR1 ENSG00000188779|ENST00000380035|SKOR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.8310852050781 2 316.161545 630.308538 NaN NaN NaN NaN NaN NaN NaN 17.619 1 16.104 15.604 16.604 -1.5148 0 0 0 0.2396 1 2568 2568 0 0 1 16287 7194 10636 10639 16402 16402 -0.021404306105864634 GGRGGGRH 8 Unmodified _GGRGGGRH_ 0 0 0 REV__ENSG00000177283|ENST00000374694|FZD8 REV__ENSG00000177283|ENST00000374694|FZD8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 377.1947021484375 2 377.196785 752.379017 NaN NaN NaN NaN NaN NaN NaN 122.02 1 117.49 116.99 117.99 -4.5305 0 0 0 0.23899 1 23492 23492 1.3295 0 1 + 16288 18550 10637 10640 16403 16403 -0.007077125022533437 GGRLKLFF 8 Unmodified _GGRLKLFF_ 0 0 0 ENST00000361577.7_2_14:45431416-45431725:+|nuORF ENST00000361577.7_2_14:45431416-45431725:+|nuORF ENST00000361577.7_2_14:45431416-45431725:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.19140625 3 313.192117 936.554522 NaN NaN NaN NaN NaN NaN NaN 68.679 1 68.679 68.179 69.179 0 0 0 0 0.21486 1 13283 13283 4.3292 0 1 16289 9027 10638 10641 16404 16404 0.08370689239268359 GGRLKLFF 8 Unmodified _GGRLKLFF_ 0 0 0 ENST00000361577.7_2_14:45431416-45431725:+|nuORF ENST00000361577.7_2_14:45431416-45431725:+|nuORF ENST00000361577.7_2_14:45431416-45431725:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.191650390625 3 313.192117 936.554522 NaN NaN NaN NaN NaN NaN NaN 74.449 1 71.085 70.585 71.585 -3.3643 0 0 0 0.21486 1 14524 14524 1.8442 0 1 16290 9027 10638 10641 16405 16405 0.08370689239268359 GGRLKLFF 8 Unmodified _GGRLKLFF_ 0 0 0 ENST00000361577.7_2_14:45431416-45431725:+|nuORF ENST00000361577.7_2_14:45431416-45431725:+|nuORF ENST00000361577.7_2_14:45431416-45431725:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1759338378906 3 313.192117 936.554522 NaN NaN NaN NaN NaN NaN NaN 72.636 1 69.098 68.598 69.598 -3.5385 0 0 0 0.21486 1 13773 13773 1.8442 0 1 16291 9027 10638 10641 16406 16406 0.08370689239268359 GGSAGHGH 8 Unmodified _GGSAGHGH_ 0 0 0 ENST00000485112.1_1_2:122286319-122287917:-|nuORF ENST00000485112.1_1_2:122286319-122287917:-|nuORF ENST00000485112.1_1_2:122286319-122287917:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.1498107910156 2 340.148969 678.283386 NaN NaN NaN NaN NaN NaN NaN 60.522 1 60.522 60.022 61.022 0 0 0 0 0.2396 1 11604 11604 0.12286 0 1 16292 10440 10639 10642 16407 16407 -0.06862485413148534 GGSELGRAPPL 11 Unmodified _GGSELGRAPPL_ 0 0 0 REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 351.8865966796875 3 351.861096 1052.56146 -0.3115 -0.00010961 -0.16651 -5.859E-05 -0.47802 -0.0001682 351.8611948841232 28.752 1.0809 26.756 26.273 27.354 -1.9962 55 30 3 0 0 0 0.53979 1 4868 4868 0.58532 0 1 1015600 + 16293 21346 10640 10643 16408 16408 0.0372795732916984 GGSELGRAPPL 11 Unmodified _GGSELGRAPPL_ 0 0 0 REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 351.861096 1052.56146 -0.23566 -8.2918E-05 0.13566 4.7734E-05 -0.099994 -3.5184E-05 351.8611888957427 26.929 0.92472 26.929 26.495 27.419 0 0.10424 0.00042505 NaN 0.58532 49 26 3 NaN NaN NaN NaN 0 NaN NaN 0 1089100 + 16294 21346 10640 10643 0.0372795732916984 GGSELGRAPPL 11 Unmodified _GGSELGRAPPL_ 0 0 0 REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 351.861096 1052.56146 0.4547 0.00015999 -0.60616 -0.00021328 -0.15146 -5.3294E-05 351.86092292885195 28.711 0.90189 26.755 26.399 27.301 -1.9561 -0.069417 -0.000358 NaN 0.58532 53 25 3 NaN NaN NaN NaN 0 NaN NaN 0 1017200 + 16295 21346 10640 10643 0.0372795732916984 GGSELGRAPPL 11 Unmodified _GGSELGRAPPL_ 0 0 0 REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 351.861096 1052.56146 0.28852 0.00010152 -0.46758 -0.00016452 -0.17905 -6.3002E-05 352.19512985438985 28.614 0.93831 26.858 26.39 27.328 -1.7552 0.033875 -0.00021172 NaN 0.58532 45 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1337300 + 16296 21346 10640 10643 0.0372795732916984 GGSELGRAPPL 11 Unmodified _GGSELGRAPPL_ 0 0 0 REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 351.861096 1052.56146 -0.3115 -0.00010961 -0.16651 -5.859E-05 -0.47802 -0.0001682 351.8611948841232 28.752 1.0809 26.756 26.273 27.354 -1.9962 -0.068702 0.00010608 NaN 0.58532 55 30 3 NaN NaN NaN NaN 0 NaN NaN 0 1015600 + 16297 21346 10640 10643 0.0372795732916984 GGSGPAHVPH 10 Unmodified _GGSGPAHVPH_ 0 0 0 REV__ENST00000336926.10_1_7:75166652-75166730:-|nuORF REV__ENST00000336926.10_1_7:75166652-75166730:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22442626953125 2 458.225208 914.435863 0.060728 2.7827E-05 -1.21 -0.00055446 -1.1493 -0.00052663 458.2245958989299 36.76 0.51484 34.413 34.14 34.655 -2.3479 29 14 3 0 0 0 0.42762 1 6549 6549 10.151 6.5635 1 1434800 + 16298 20670 10641 10644 16409 16409 -0.024777097363880785 GGSHAGSSCDC 11 Unmodified _GGSHAGSSCDC_ 0 0 0 ENST00000487519.5_1_10:60145183-60146060:+|nuORF ENST00000487519.5_1_10:60145183-60146060:+|nuORF ENST00000487519.5_1_10:60145183-60146060:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2716369628906 2 490.663466 979.312379 NaN NaN NaN NaN NaN NaN NaN 15.412 1 14.298 13.798 14.798 -1.1142 0 0 0 0.22632 1 2373 2373 0.00056442 0 1 16299 10469 10642 10645 16410 16410 -0.1781049696134005 GGSSITQQLA 10 Unmodified _GGSSITQQLA_ 0 0 0 tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1 tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1 tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2485656738281 2 481.251089 960.487624 0.039845 1.9176E-05 -1.0501 -0.00050534 -1.0102 -0.00048616 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 0.36162 1 7017 7017 14.405 2.1647 1 69706000 16300 25912 10643 10646 16411 16411 0.005799891668630153 GGTHGPIH 8 Unmodified _GGTHGPIH_ 0 0 0 REV__nc|ENSG00000288591|Q9Y2I9-3|TBC1D30 REV__nc|ENSG00000288591|Q9Y2I9-3|TBC1D30 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7205505371094 2 388.195919 774.377286 NaN NaN NaN NaN NaN NaN NaN 93.837 1 89.993 89.493 90.493 -3.844 0 0 0 0.21486 1 17995 17995 5.2307 0 1 + 16301 15248 10644 10647 16412 16412 -0.018927663108456727 GGTKVCGK 8 Unmodified _GGTKVCGK_ 0 0 0 REV__nc|ENSG00000185324|Q15131-5|CDK10 REV__nc|ENSG00000185324|Q15131-5|CDK10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2142333984375 2 375.202356 748.390159 NaN NaN NaN NaN NaN NaN NaN 56.232 1 56.232 55.732 56.732 0 0 0 0 0.23664 1 10736 10736 3.2813 0.63827 1 + 16302 22462 10645 10648 16413 16413 0.005899287570173328 GGTVPLAF 8 Unmodified _GGTVPLAF_ 0 0 0 REV__RUNDC1|p.K513Qfs*16|1|0.27|ENSG00000198863|chr17:42991405-42991406|-/C|frameshift_variant REV__RUNDC1|p.K513Qfs*16|1|0.27|ENSG00000198863|chr17:42991405-42991406|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2120361328125 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 25.009 1 23.475 22.975 23.975 -1.5342 0 0 0 0.2343 1 4093 4093 1.7423 1.6194 1 + 16303 19466 10646 10649 16414 16414 0.02215056777231439 GGTWVTPHYW 10 Unmodified _GGTWVTPHYW_ 0 0 0 REV__ENST00000487573.1_1_7:112724824-112727533:-|nuORF REV__ENST00000487573.1_1_7:112724824-112727533:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2814331054688 2 602.282723 1202.55089 NaN NaN NaN NaN NaN NaN NaN 76.702 1 73.068 72.568 73.568 -3.6337 0 0 0 2.8426 1 14603 14603 0.063865 0 1 + 16304 22258 10647 10650 16415 16415 -0.0422802532523292 GGVDWFHFT 9 Unmodified _GGVDWFHFT_ 0 0 0 REV__ENST00000404372.1_1_6:151256177-151256594:+|nuORF REV__ENST00000404372.1_1_6:151256177-151256594:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.26318359375 2 533.243067 1064.47158 -0.028593 -1.5247E-05 3.413 0.0018199 3.3844 0.0018047 533.7450599490227 103.33 0.77972 99.141 98.941 99.721 -4.1861 32 22 2 0 0 0 0.62102 1 20356 20356 11.64 0.81637 1 1171600 + 16305 15697 10648 10651 16416 16416 -0.05807672279388498 GGVPHLGL 8 Unmodified _GGVPHLGL_ 0 0 0 ENST00000379573.6_1_20:3801261-3802808:+|nuORF ENST00000379573.6_1_20:3801261-3802808:+|nuORF ENST00000379573.6_1_20:3801261-3802808:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21905517578125 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 54.199 1 51.315 50.815 51.815 -2.8837 0 0 0 0.23711 1 10337 10337 0.12286 0 1 16306 9299 10649 10652 16417 16417 0.03889878871370911 GGWAGGNA 8 Unmodified _GGWAGGNA_ 0 0 0 nc|ENSG00000151552|P09417-2|QDPR;ENSG00000151552|ENST00000281243|QDPR nc|ENSG00000151552|P09417-2|QDPR nc|ENSG00000151552|P09417-2|QDPR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.3150939941406 2 345.15372 688.292888 NaN NaN NaN NaN NaN NaN NaN 4.6922 1 3.6522 3.1522 4.1522 -1.04 0 0 0 0.21486 1 137 137 0.79363 0 1 16307 4871 10650 10653 16418 16418 -0.06372717127635497 GGWFLVSGAGQ 11 Unmodified _GGWFLVSGAGQ_ 0 0 0 REV__nc|ENSG00000204084|P32019-4|INPP5B REV__nc|ENSG00000204084|P32019-4|INPP5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2740478515625 2 539.769448 1077.52434 0.40039 0.00021612 -0.46236 -0.00024957 -0.061971 -3.345E-05 539.7691815168158 67.39 0.90556 64.063 63.718 64.624 -3.3268 80 25 5 0 0 0 0.49281 1 12658 12658 2.732 1.6669 1 29997000 + 16308 24237 10651 10654 16419 16419 -0.011317142165808036 GGWGLRVE 8 Unmodified _GGWGLRVE_ 0 0 0 REV__ENST00000521696.1_1_8:100025101-100025236:-|nuORF REV__ENST00000521696.1_1_8:100025101-100025236:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2331848144531 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 77.956 1 74.493 73.993 74.993 -3.4633 0 0 0 0.20294 1 15222 15222 23.148 8.5667 1 + 16309 22652 10652 10655 16420 16420 0.009123624117592044 GGYGGGGC 8 Unmodified _GGYGGGGC_ 0 0 0 REV__ENST00000432375.1_1_6:32293532-32293889:+|nuORF REV__ENST00000432375.1_1_6:32293532-32293889:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1380310058594 2 314.113206 626.21186 NaN NaN NaN NaN NaN NaN NaN 34.977 1 32.7 32.2 33.2 -2.2766 0 0 0 0.2396 1 6144 6144 0 0 1 + 16310 16534 10653 10656 16421 16421 -0.11619741162019182 GGYIAGTH 8 Unmodified _GGYIAGTH_ 0 0 0 ENST00000483646.2_1_20:39788534-39788600:+|nuORF ENST00000483646.2_1_20:39788534-39788600:+|nuORF ENST00000483646.2_1_20:39788534-39788600:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7250061035156 2 388.190303 774.366053 NaN NaN NaN NaN NaN NaN NaN 38.084 1 38.084 37.584 38.584 0 0 0 0 0.21486 1 7055 7055 9.3474 2.9933 1 16311 10417 10654 10657 16422 16422 -0.030155884049918313 GHAHDSAAITV 11 Unmodified _GHAHDSAAITV_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2718505859375 2 539.767437 1077.52032 0.16886 9.1147E-05 -0.022247 -1.2008E-05 0.14662 7.9139E-05 539.7674176852238 15.182 1.3917 15.182 14.807 16.199 0 147 39 5 0 0 0 0.60781 1 2368 2368 5.4027 0.5057 1 22003000 + 16312 17662 10655 10658 16423 16423 -0.015338037103219904 GHAVSLEQHT 10 Unmodified _GHAVSLEQHT_ 0 0 0 ENSG00000165702|ENST00000372122|GFI1B ENSG00000165702|ENST00000372122|GFI1B ENSG00000165702|ENST00000372122|GFI1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.5164794921875 3 360.180717 1077.52032 -0.5075 -0.00018279 0.40028 0.00014417 -0.10722 -3.8619E-05 360.1808449096896 16.327 1.4145 15.106 14.644 16.058 -1.2219 130 40 4 0 0 0 0.52989 1 2335 2335 1.9064 1.8331 1 9381200 16313 5655 10656 10659 16424 16424 -0.015338037102765156 GHDELKWN 8 Unmodified _GHDELKWN_ 0 0 0 REV__nc|ENSG00000156219|Q13508-2|ART3 REV__nc|ENSG00000156219|Q13508-2|ART3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.993896484375 3 333.494524 997.461744 -0.053452 -1.7826E-05 -0.16346 -5.4513E-05 -0.21691 -7.2339E-05 333.4949610173304 42.309 5.3522 39.658 39.178 44.531 -2.651 398 152 6 0 0 0 1.0243 1 7936 7936 3.9444 1.2092 1 1599899999.9999998 + 16314 17251 10657 10660 16425 16425 -0.03708860284768889 GHDELKWN 8 Unmodified _GHDELKWN_ 0 0 0 REV__nc|ENSG00000156219|Q13508-2|ART3 REV__nc|ENSG00000156219|Q13508-2|ART3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.9998474121094 3 333.494524 997.461744 -0.68074 -0.00022702 0.51106 0.00017044 -0.16969 -5.659E-05 333.4951127677256 42.272 5.8997 39.666 39.22 45.12 -2.606 385 168 6 0 0 0 1.0243 1 7826 7826 3.9444 0.3479 1 1577699999.9999998 + 16315 17251 10657 10660 16426 16426 -0.03708860284768889 GHDIPYVK 8 Unmodified _GHDIPYVK_ 0 0 0 REV__ENSG00000163930|ENST00000460680|BAP1 REV__ENSG00000163930|ENST00000460680|BAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1680908203125 3 310.167749 927.481417 NaN NaN NaN NaN NaN NaN NaN 38.283 1 38.283 37.783 38.783 0 0 0 0 0.22934 1 7095 7095 0.68139 0 1 + 16316 17629 10658 10661 16427 16427 0.014775157260032756 GHDIPYVK 8 Unmodified _GHDIPYVK_ 0 0 0 REV__ENSG00000163930|ENST00000460680|BAP1 REV__ENSG00000163930|ENST00000460680|BAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1611022949219 3 310.167749 927.481417 -0.49853 -0.00015463 0.92136 0.00028578 0.42283 0.00013115 310.16802685559935 40.647 0.32112 38.013 37.935 38.257 -2.6348 12 8 2 0 0 0 0.69887 1 7617 7617 10.824 0.75 1 1072200 + 16317 17629 10658 10661 16428 16428 0.014775157260032756 GHDIPYVK 8 Unmodified _GHDIPYVK_ 0 0 0 REV__ENSG00000163930|ENST00000460680|BAP1 REV__ENSG00000163930|ENST00000460680|BAP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16766357421875 3 310.167749 927.481417 NaN NaN NaN NaN NaN NaN NaN 40.53 1 37.99 37.49 38.49 -2.5398 0 0 0 0.22676 1 7267 7267 0.68139 0 1 + 16318 17629 10658 10661 16429 16429 0.014775157260032756 GHDRIIKK 8 Unmodified _GHDRIIKK_ 0 0 0 REV__nc|ENSG00000276234|O75478-2|TADA2A REV__nc|ENSG00000276234|O75478-2|TADA2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.8672180175781 3 322.866293 965.577048 NaN NaN NaN NaN NaN NaN NaN 17.107 1 17.107 16.607 17.607 0 0 0 0 0.21486 1 2693 2693 7.2892 0 1 + 16319 19939 10659 10662 16430 16430 0.09288288636889774 GHDUARGS 8 Unmodified _GHDUARGS_ 0 0 0 nc|ENSG00000211452|P49895-8|DIO1;nc|ENSG00000211452|P49895-9|DIO1 nc|ENSG00000211452|P49895-8|DIO1 nc|ENSG00000211452|P49895-8|DIO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.256103515625 2 425.638894 849.263236 -0.7047 -0.00029995 -4.4191 -0.001881 -5.1238 -0.0021809 425.63747824308 12.432 0.76304 11.303 11.009 11.772 -1.1293 29 21 2 0 0 0 1.0268 1 1473 1473 0 0 0 1786700 16320 12569 10660 10663 16431 16431 -0.16742524698702255 GHEVRKLQ 8 Unmodified _GHEVRKLQ_ 0 0 0 ENSG00000170279|ENST00000307003|C7orf33 ENSG00000170279|ENST00000307003|C7orf33 ENSG00000170279|ENST00000307003|C7orf33 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.8855285644531 3 322.854164 965.540663 NaN NaN NaN NaN NaN NaN NaN 16.963 1 16.963 16.463 17.463 0 0 0 0 0.21486 1 2663 2663 3.9444 0 1 16321 6056 10661 10664 16432 16432 0.05651411740200274 GHGLGNTFA 9 Unmodified _GHGLGNTFA_ 0 0 0 REV__ENST00000490885.6_1_1:186645551-186649536:-|nuORF REV__ENST00000490885.6_1_1:186645551-186649536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156066894531 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 85.03 1 81.121 80.621 81.621 -3.9093 0 0 0 0.23048 1 16166 16166 14.582 1.0738 1 + 16322 14306 10662 10665 16433 16433 -0.027245144849530334 GHHHPRHG 8 Unmodified _GHHHPRHG_ 0 0 0 REV__ENST00000229829.6_1_6:32974526-32975093:-|nuORF REV__ENST00000229829.6_1_6:32974526-32975093:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1551818847656 3 312.154948 933.443014 NaN NaN NaN NaN NaN NaN NaN 42.498 1 39.892 39.392 40.392 -2.606 0 0 0 0.21486 1 7646 7646 1.8442 0 1 + 16323 20064 10663 10666 16434 16434 -0.026369323452854587 GHILHGKKDE 10 Unmodified _GHILHGKKDE_ 0 0 0 REV__ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant REV__ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 378.4889221191406 3 378.540245 1132.59891 -0.25456 -9.636E-05 0.048928 1.8521E-05 -0.20563 -7.7839E-05 378.54020931426675 20.377 1.6342 18.992 17.908 19.542 -1.3847 110 46 3 0 0 0 1.1218 1 3209 3209 10.151 0 1 3774500 + 16324 13128 10664 10667 16435 16435 0.03791048594803215 GHISNCPAELY 11 Unmodified _GHISNCPAELY_ 0 0 0 ENST00000554546.5_1_14:73742736-73742850:-|nuORF ENST00000554546.5_1_14:73742736-73742850:-|nuORF ENST00000554546.5_1_14:73742736-73742850:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2762451171875 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 86.61 1 82.66 82.16 83.16 -3.9503 0 0 0 0.23199 1 16488 16488 6.7232 0 1 16325 11220 10665 10668 16436 16436 -0.054160101307388686 GHIVYHGQR 9 Unmodified _GHIVYHGQR_ 0 0 0 REV__nc|ENSG00000188766|Q2MJR0-2|SPRED3 REV__nc|ENSG00000188766|Q2MJR0-2|SPRED3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.07476806640625 3 356.189547 1065.54681 -0.80389 -0.00028634 -0.71788 -0.0002557 -1.5218 -0.00054204 356.1892903150521 25.479 1.2758 23.626 22.71 23.986 -1.8534 60 36 3 0 0 0 0.87888 1 4111 4111 2.7352 2.6404 1 1705400 + 16326 19168 10666 10669 16437 16437 0.01665929971704827 GHKLPVPGY 9 Unmodified _GHKLPVPGY_ 0 0 0 ENSG00000166260|ENST00000299335|COX11 ENSG00000166260|ENST00000299335|COX11 ENSG00000166260|ENST00000299335|COX11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1470031738281 3 323.18351 966.528701 NaN NaN NaN NaN NaN NaN NaN 122.55 1 117.86 117.36 118.36 -4.6873 0 0 0 0.23508 1 23535 23535 1.0715 0.61312 1 16327 5708 10667 10670 16438 16438 0.04409794996990968 GHKQGSPY 8 Unmodified _GHKQGSPY_ 0 0 0 REV__ENST00000596981.1_1_19:49311427-49311520:-|nuORF REV__ENST00000596981.1_1_19:49311427-49311520:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2159423828125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 126.21 1 126.21 125.71 126.71 0 0 0 0 0.21486 1 24907 24907 5.2307 2.6532 1 + 16328 23386 10668 10671 16439 16439 -0.027245144849530334 GHKQQTRL 8 Unmodified _GHKQQTRL_ 0 0 0 REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1 REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1695861816406 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 138.04 1 133.12 132.62 133.62 -4.9216 0 0 0 0.21486 1 26543 26543 1.6526 0 1 + 16329 17818 10669 10672 16440 16440 0.051305275974073083 GHKQQTRL 8 Unmodified _GHKQQTRL_ 0 0 0 REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1 REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.14599609375 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 138.24 1 133.32 132.82 133.82 -4.9216 0 0 0 0.21486 1 26581 26581 1.6526 0 1 + 16330 17818 10669 10672 16441 16441 0.051305275974073083 GHKRKLAT 8 Unmodified _GHKRKLAT_ 0 0 0 RAD54L2|p.S1325Pfs*18|1|0.33|ENSG00000164080|chr3:51662984-51662984|C/-|frameshift_variant;ENSG00000164080|ENST00000684192|RAD54L2;ENST00000461680.1_1_3:51673299-51697433:+|nuORF;ENST00000487093.5_1_3:51669772-51697433:+|nuORF RAD54L2|p.S1325Pfs*18|1|0.33|ENSG00000164080|chr3:51662984-51662984|C/-|frameshift_variant RAD54L2|p.S1325Pfs*18|1|0.33|ENSG00000164080|chr3:51662984-51662984|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.1912841796875 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 88.398 1 88.398 87.898 88.898 0 0 0 0 0.21486 1 17255 17255 1.6526 0 1 16331 5505 10670 10673 16442 16442 0.09244019465415931 GHKRKLAT 8 Unmodified _GHKRKLAT_ 0 0 0 RAD54L2|p.S1325Pfs*18|1|0.33|ENSG00000164080|chr3:51662984-51662984|C/-|frameshift_variant;ENSG00000164080|ENST00000684192|RAD54L2;ENST00000461680.1_1_3:51673299-51697433:+|nuORF;ENST00000487093.5_1_3:51669772-51697433:+|nuORF RAD54L2|p.S1325Pfs*18|1|0.33|ENSG00000164080|chr3:51662984-51662984|C/-|frameshift_variant RAD54L2|p.S1325Pfs*18|1|0.33|ENSG00000164080|chr3:51662984-51662984|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.2183837890625 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 107.64 1 103.32 102.82 103.82 -4.32 0 0 0 0.21486 1 21202 21202 1.6526 0 1 16332 5505 10670 10673 16443 16443 0.09244019465415931 GHLFRGQY 8 Unmodified _GHLFRGQY_ 0 0 0 REV__UBL3|p.R59Q|1|0.37|ENSG00000122042|chr13:29772159-29772159|C/T|missense_variant REV__UBL3|p.R59Q|1|0.37|ENSG00000122042|chr13:29772159-29772159|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2756042480469 2 489.251226 976.487899 0.2668 0.00013053 -1.1619 -0.00056845 -0.89508 -0.00043792 489.25055220298844 117.13 0.86949 112.64 112.18 113.05 -4.486 52 24 3 0 0 0 0.72231 1 23130 23130 11.114 0.29054 1 5011600 + 16333 15675 10671 10674 16444 16444 -0.0012854632262815358 GHLGRRPG 8 Unmodified _GHLGRRPG_ 0 0 0 REV__ENST00000355624.7_1_10:119805904-119806039:-|nuORF REV__ENST00000355624.7_1_10:119805904-119806039:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2431640625 2 425.243735 848.472918 0.69818 0.00029689 -1.5674 -0.00066651 -0.86918 -0.00036961 425.2429884978199 27.944 0.45685 25.988 25.803 26.26 -1.9561 21 12 2 0 0 0 8448 1 5016 5016 0.62683 0 1 1798500 + 16334 20795 10672 10675 16445 16445 0.042620066000381485 GHQDHKHY 8 Unmodified _GHQDHKHY_ 0 0 0 TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.1954650878906 3 341.158135 1020.45258 NaN NaN NaN NaN NaN NaN NaN 85.923 1 82.196 81.696 82.696 -3.727 0 0 0 0.21486 1 16797 16797 1.6526 0.45928 1 16335 26529 10673 10676 16446 16446 -0.05683208850439314 GHQMKRGGP 9 Unmodified _GHQMKRGGP_ 0 0 0 REV__ENST00000300141.10_1_15:65804856-65810023:-|nuORF REV__ENST00000300141.10_1_15:65804856-65810023:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1492004394531 3 323.167866 966.481768 NaN NaN NaN NaN NaN NaN NaN 81.838 1 77.999 77.499 78.499 -3.8392 0 0 0 0.23508 1 15540 15540 1.0715 0.67075 1 + 16336 20398 10674 10677 16447 16447 -0.0028138782579389954 GHQQAPPG 8 Unmodified _GHQQAPPG_ 0 0 0 ENST00000412176.1_1_1:24228270-24228549:-|nuORF ENST00000412176.1_1_1:24228270-24228549:-|nuORF ENST00000412176.1_1_1:24228270-24228549:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 396.2558288574219 2 396.193377 790.372201 NaN NaN NaN NaN NaN NaN NaN 27.78 1 25.975 25.475 26.475 -1.805 0 0 0 0.21486 1 4948 4948 2.8892 0.31174 1 16337 9582 10675 10678 16448 16448 -0.0313707017348861 GHQQHSHH 8 Unmodified _GHQQHSHH_ 0 0 0 nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143;ENST00000532305.1_1_11:9546777-9549157:+|nuORF nc|ENSG00000166478|P52747-2|ZNF143 nc|ENSG00000166478|P52747-2|ZNF143 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.149658203125 3 323.14623 966.416859 NaN NaN NaN NaN NaN NaN NaN 86.364 1 82.414 81.914 82.914 -3.9503 0 0 0 0.21486 1 16439 16439 0.40072 0 1 16338 5728 10676 10679 16449 16449 -0.06769246307442245 GHQQHSHH 8 Unmodified _GHQQHSHH_ 0 0 0 nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143;ENST00000532305.1_1_11:9546777-9549157:+|nuORF nc|ENSG00000166478|P52747-2|ZNF143 nc|ENSG00000166478|P52747-2|ZNF143 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1593933105469 3 323.14623 966.416859 NaN NaN NaN NaN NaN NaN NaN 92.833 1 88.69 88.19 89.19 -4.1435 0 0 0 0.21486 1 17690 17690 0.40072 0 1 16339 5728 10676 10679 16450 16450 -0.06769246307442245 GHQRCKSL 8 Unmodified _GHQRCKSL_ 0 0 0 REV__CDR2L|p.E368K|1|0.35|ENSG00000109089|chr17:75003778-75003778|G/A|missense_variant REV__CDR2L|p.E368K|1|0.35|ENSG00000109089|chr17:75003778-75003778|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648254394531 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 109.97 1 109.97 109.47 110.47 0 0 0 0 0.23584 1 21627 21627 0.12286 0 1 + 16340 13359 10677 10680 16451 16451 0.004232097999192774 GHQRCKSL 8 Unmodified _GHQRCKSL_ 0 0 0 REV__CDR2L|p.E368K|1|0.35|ENSG00000109089|chr17:75003778-75003778|G/A|missense_variant REV__CDR2L|p.E368K|1|0.35|ENSG00000109089|chr17:75003778-75003778|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648254394531 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 109.99 1 109.99 109.49 110.49 0 0 0 0 0.21486 1 21630 21630 3.9444 0 1 + 16341 13359 10677 10680 16452 16452 0.004232097999192774 GHQTAYQY 8 Unmodified _GHQTAYQY_ 0 0 0 REV__HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant REV__HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.12823486328125 3 323.147125 966.419545 NaN NaN NaN NaN NaN NaN NaN 93.762 1 93.762 93.262 94.262 0 0 0 0 0.21486 1 18353 18353 0.40072 0 1 + + 16342 13556 10678 10681 16453 16453 -0.06500835693157114 GHQTAYQY 8 Unmodified _GHQTAYQY_ 0 0 0 REV__HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant REV__HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1483459472656 3 323.147125 966.419545 NaN NaN NaN NaN NaN NaN NaN 100.63 1 96.329 95.829 96.829 -4.297 0 0 0 0.21486 1 19250 19250 0.40072 0 1 + + 16343 13556 10678 10681 16454 16454 -0.06500835693157114 GHRALALAES 10 Unmodified _GHRALALAES_ 0 0 0 ENST00000427797.5_1_7:56099714-56101860:-|nuORF;ENST00000421312.5_1_7:56099714-56119136:-|nuORF ENST00000427797.5_1_7:56099714-56101860:-|nuORF ENST00000427797.5_1_7:56099714-56101860:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.2272644042969 3 342.189324 1023.54614 NaN NaN NaN NaN NaN NaN NaN 86.854 1 82.904 82.404 83.404 -3.9503 0 0 0 0.22588 1 16539 16539 1.9064 0.062138 1 16344 9668 10679 10682 16455 16455 0.03531090531987502 GHRPCEGFD 9 Unmodified _GHRPCEGFD_ 0 0 0 REV__ENST00000564661.1_1_16:766609-767036:+|nuORF REV__ENST00000564661.1_1_16:766609-767036:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.80230712890625 3 339.811748 1016.41341 -0.23684 -8.0482E-05 0.94548 0.00032129 0.70864 0.0002408 339.8119993534215 64.146 0.7019 61.148 60.769 61.471 -2.9975 24 19 2 0 0 0 0.5428 1 12342 12342 4.897 0 1 925340 + 16345 23095 10680 10683 16456 16456 -0.09413677196312165 GHSSVNYHF 9 Unmodified _GHSSVNYHF_ 0 0 0 REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.0733947753906 3 349.826274 1046.45699 -0.067697 -2.3682E-05 0.20027 7.0061E-05 0.13258 4.6379E-05 349.8263079650556 32.136 0.56777 29.906 29.621 30.189 -2.2305 36 15 3 0 0 0 0.73309 1 5901 5901 2.7352 0.64919 1 7107800 + 16346 18360 10681 10684 16457 16457 -0.06437744427535108 GHSSVNYHF 9 Unmodified _GHSSVNYHF_ 0 0 0 REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 349.826274 1046.45699 -0.27393 -9.583E-05 0.45079 0.0001577 0.17685 6.1867E-05 349.82636387581306 29.853 0.51891 29.853 29.576 30.095 0 -0.031769 0.00017555 NaN 2.7352 42 14 4 NaN NaN NaN NaN 0 NaN NaN 0 8595200 + 16347 18360 10681 10684 -0.06437744427535108 GHSSVNYHF 9 Unmodified _GHSSVNYHF_ 0 0 0 REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 349.826274 1046.45699 -0.067697 -2.3682E-05 0.20027 7.0061E-05 0.13258 4.6379E-05 349.8263079650556 32.136 0.56777 29.906 29.621 30.189 -2.2305 0.021453 -8.7355E-05 NaN 2.7352 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 7107800 + 16348 18360 10681 10684 -0.06437744427535108 GHSSVNYHF 9 Unmodified _GHSSVNYHF_ 0 0 0 REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 349.826274 1046.45699 0.27844 9.7406E-05 -0.099249 -3.472E-05 0.17919 6.2686E-05 349.82620384972654 31.935 0.59364 29.909 29.623 30.216 -2.0264 0.02435 -0.0004017 NaN 2.7352 45 16 4 NaN NaN NaN NaN 0 NaN NaN 0 7303600 + 16349 18360 10681 10684 -0.06437744427535108 GHSSVNYHF 9 Unmodified _GHSSVNYHF_ 0 0 0 REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 349.826274 1046.45699 -0.21716 -7.5967E-05 0.47696 0.00016685 0.2598 9.0885E-05 349.826388537813 32.019 0.58669 29.87 29.585 30.171 -2.1483 -0.014034 0.00020302 NaN 2.7352 47 16 4 NaN NaN NaN NaN 0 NaN NaN 0 6354100 + 16350 18360 10681 10684 -0.06437744427535108 GHVLVGDEPS 10 Unmodified _GHVLVGDEPS_ 0 0 0 REV__ENSG00000115423|ENST00000389394|DNAH6 REV__ENSG00000115423|ENST00000389394|DNAH6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 505.0782470703125 2 505.251089 1008.48762 0.35524 0.00017948 -2.566 -0.0012965 -2.2108 -0.001117 505.25146844606724 29.336 0.13896 27.261 27.17 27.309 -2.0743 5 3 2 0 0 0 0.8888 1 4988 4988 3.9444 3.3429 1 122530 + 16351 15430 10682 10685 16458 16458 -0.016280108331329757 GHVVVPLW 8 Unmodified _GHVVVPLW_ 0 0 0 REV__ENST00000379638.8_1_5:112222839-112238104:-|nuORF REV__ENST00000379638.8_1_5:112222839-112238104:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7644958496094 2 453.763438 905.512323 NaN NaN NaN NaN NaN NaN NaN 12.375 1 11.255 10.755 11.755 -1.1206 0 0 0 0.2396 1 1468 1468 0.0082765 0 1 + 16352 21141 10683 10686 16459 16459 0.05578713830891502 GHWRKSLS 8 Unmodified _GHWRKSLS_ 0 0 0 REV__ENST00000540171.2_1_14:105147650-105150445:+|nuORF REV__ENST00000540171.2_1_14:105147650-105150445:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1795654296875 3 324.178759 969.514448 NaN NaN NaN NaN NaN NaN NaN 69.025 1 65.846 65.346 66.346 -3.1796 0 0 0 0.21486 1 13414 13414 1.6526 1.1943 1 + 16353 22854 10684 10687 16460 16460 0.028471425687143892 GIADEIYKR 9 Unmodified _GIADEIYKR_ 0 0 0 REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.0746765136719 3 355.529346 1063.56621 0.33525 0.00011919 -0.21109 -7.5049E-05 0.12416 4.4142E-05 355.52921439802446 68.576 0.80566 65.04 64.59 65.396 -3.5362 55 22 3 0 0 0 0.86532 1 12811 12811 5.2969 1.4206 1 12555000 + 16354 14951 10685 10688 16461 16461 0.036968414719467546 GIADEIYKR 9 Unmodified _GIADEIYKR_ 0 0 0 REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 355.529346 1063.56621 -0.35634 -0.00012669 0.5614 0.00019959 0.20506 7.2906E-05 355.529438523024 68.371 0.92735 64.981 64.457 65.384 -3.3903 -0.029217 0.00045247 NaN 5.2969 76 26 4 NaN NaN NaN NaN 0 NaN NaN 0 15198000 + 16355 14951 10685 10688 0.036968414719467546 GIAPASPRPP 10 Unmodified _GIAPASPRPP_ 0 0 0 REV__ENST00000589137.5_1_19:36032474-36032856:-|nuORF REV__ENST00000589137.5_1_19:36032474-36032856:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7740478515625 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 106.11 1 101.73 101.23 102.23 -4.3764 0 0 0 0.22561 1 20348 20348 16.942 3.4344 1 + 16356 23292 10686 10689 16462 16462 0.05220893508658264 GIARVVKNPG 10 Unmodified _GIARVVKNPG_ 0 0 0 ENSG00000115993|ENST00000332624|TRAK2 ENSG00000115993|ENST00000332624|TRAK2 ENSG00000115993|ENST00000332624|TRAK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.19873046875 3 337.541697 1009.60326 -0.34128 -0.0001152 0.40057 0.00013521 0.05929 2.0013E-05 337.5418019258426 27.804 0.75933 27.804 27.318 28.077 0 48 21 3 0 0 0 0.47611 1 4915 4915 6.6304 0.42459 1 1461500 16357 2898 10687 10690 16463 16463 0.098845578083683 GIARVVKNPG 10 Unmodified _GIARVVKNPG_ 0 0 0 ENSG00000115993|ENST00000332624|TRAK2 ENSG00000115993|ENST00000332624|TRAK2 ENSG00000115993|ENST00000332624|TRAK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 337.541697 1009.60326 0.30025 0.00010135 -0.36503 -0.00012321 -0.064778 -2.1865E-05 337.5415516094719 29.743 0.72736 27.626 27.214 27.941 -2.1167 -0.083958 -0.00029643 NaN 6.6304 36 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1211500 16358 2898 10687 10690 0.098845578083683 GIARVVKNPG 10 Unmodified _GIARVVKNPG_ 0 0 0 ENSG00000115993|ENST00000332624|TRAK2 ENSG00000115993|ENST00000332624|TRAK2 ENSG00000115993|ENST00000332624|TRAK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 337.541697 1009.60326 0.35042 0.00011828 -0.46911 -0.00015835 -0.11869 -4.0064E-05 337.5414980282986 29.594 0.66649 27.701 27.366 28.032 -1.8928 -0.0091682 -0.00040183 NaN 6.6304 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 646260 16359 2898 10687 10690 0.098845578083683 GIARVVKNPG 10 Unmodified _GIARVVKNPG_ 0 0 0 ENSG00000115993|ENST00000332624|TRAK2 ENSG00000115993|ENST00000332624|TRAK2 ENSG00000115993|ENST00000332624|TRAK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 337.541697 1009.60326 -0.17045 -5.7535E-05 0.15845 5.3483E-05 -0.012005 -4.0522E-06 337.5417231121572 29.784 0.83412 27.71 27.276 28.11 -2.0743 -0.0004434 0.00023365 NaN 6.6304 46 23 3 NaN NaN NaN NaN 0 NaN NaN 0 1265700 16360 2898 10687 10690 0.098845578083683 GIASYPLSL 9 Unmodified _GIASYPLSL_ 0 0 0 nc|ENSG00000143420|O43768-4|ENSA nc|ENSG00000143420|O43768-4|ENSA nc|ENSG00000143420|O43768-4|ENSA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23284912109375 2 460.758018 919.501483 -0.062131 -2.8627E-05 0.14795 6.8169E-05 0.085818 3.9541E-05 460.7581366013324 101.14 0.59307 96.985 96.634 97.227 -4.1594 27 16 2 0 0 0 0.76082 1 19888 19888 8.5933 0 1 1450200 16361 12363 10688 10691 16464 16464 0.038512666659471506 GIATLAVVLG 10 Unmodified _GIATLAVVLG_ 0 0 0 ENSG00000181773|ENST00000374024|GPR3 ENSG00000181773|ENST00000374024|GPR3 ENSG00000181773|ENST00000374024|GPR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23883056640625 2 457.289485 912.564418 -0.094721 -4.3315E-05 0.40041 0.0001831 0.30569 0.00013979 457.289594463924 112.06 0.55734 107.53 107.24 107.8 -4.5259 23 15 2 0 0 0 0.63253 1 21507 21507 26.884 2.8631 1 1426300 16362 6740 10689 10692 16465 16465 0.104638324540133 GIDDFFGPI 9 Unmodified _GIDDFFGPI_ 0 0 0 REV__nc|ENSG00000170471|Q86X10-2|RALGAPB REV__nc|ENSG00000170471|Q86X10-2|RALGAPB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2759704589844 2 490.739825 979.465098 0.085029 4.1727E-05 0.4686 0.00022996 0.55363 0.00027169 490.7402722146789 106.76 0.31129 102.35 102.23 102.54 -4.4121 13 8 2 0 0 0 0.76082 1 20492 20492 8.5933 0 1 941340 + 16363 18166 10690 10693 16466 16466 -0.025456102307543915 GIDDLITY 8 Unmodified _GIDDLITY_ 0 0 0 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.4047241210938 1 909.45639 908.449113 0.31684 0.00028815 -0.036699 -3.3377E-05 0.28014 0.00025477 909.4563117089918 130.04 0.7674 125.27 125 125.77 -4.7725 28 21 2 0 0 0 0.45067 1 25007 25007 30.225 7.0764 1 1892400 + 16364 24061 10691 10694 16467 16467 -0.008773164676540546 GIDDLITY 8 Unmodified _GIDDLITY_ 0 0 0 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 909.45639 908.449113 0.20978 0.00019079 0.38786 0.00035274 0.59764 0.00054353 909.4567338410061 129.89 0.64008 125.25 125.08 125.72 -4.6359 -0.087592 0.00026584 NaN 30.225 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2866600 + 16365 24061 10691 10694 -0.008773164676540546 GIDDLITY 8 Unmodified _GIDDLITY_ 0 0 0 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 909.45639 908.449113 0.26537 0.00024134 -0.064772 -5.8907E-05 0.20059 0.00018243 909.4563823684506 130.33 0.5872 125.5 125.12 125.7 -4.8355 0.15828 -0.0001458 NaN 30.225 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2181900 + 16366 24061 10691 10694 -0.008773164676540546 GIDDLITY 8 Unmodified _GIDDLITY_ 0 0 0 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 909.45639 908.449113 0.31684 0.00028815 -0.036699 -3.3377E-05 0.28014 0.00025477 909.4563117089918 130.04 0.7674 125.27 125 125.77 -4.7725 -0.070683 -0.00012027 NaN 30.225 28 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1892400 + 16367 24061 10691 10694 -0.008773164676540546 GIDEKQEP 8 Unmodified _GIDEKQEP_ 0 0 0 REV__nc|ENSG00000070182|P11277-3|SPTB REV__nc|ENSG00000070182|P11277-3|SPTB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2246398925781 2 458.224539 914.434526 -0.1941 -8.8942E-05 -0.63213 -0.00028966 -0.82623 -0.0003786 458.2241915209431 48.902 1.8648 46.03 44.873 46.738 -2.872 108 52 4 0 0 0 0.66265 1 9367 9367 18.135 1.1927 1 40719000 + 16368 14252 10692 10695 16468 16468 -0.026113886158100286 GIDGESFELK 10 Unmodified _GIDGESFELK_ 0 0 0 ENSG00000120158|ENST00000381750|RCL1;ENST00000473230.1_1_9:4833183-4841309:+|nuORF ENSG00000120158|ENST00000381750|RCL1 ENSG00000120158|ENST00000381750|RCL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.792724609375 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 152.01 1 152.01 151.51 152.51 0 0 0 0 0.22544 1 30446 30446 19.257 0 1 16369 3121 10693 10696 16469 16469 -0.013868748644881634 GIDLVLIIII 10 Unmodified _GIDLVLIIII_ 0 0 0 REV__tr|U7SL46|U7SL46_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01979PE=4SV=1 REV__tr|U7SL46|U7SL46_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01979PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2841186523438 2 541.365193 1080.71583 NaN NaN NaN NaN NaN NaN NaN 156.63 1 151.35 150.85 151.85 -5.2854 0 0 0 0.22588 1 30388 30388 1.6526 1.1943 1 + 16370 24939 10694 10697 16470 16470 0.17870393761882042 GIDTVTTLVE 10 Unmodified _GIDTVTTLVE_ 0 0 0 ENST00000468834.1_1_10:33346560-33347304:-|nuORF ENST00000468834.1_1_10:33346560-33347304:-|nuORF ENST00000468834.1_1_10:33346560-33347304:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7007446289062 2 524.282054 1046.54956 -0.31395 -0.0001646 0.54675 0.00028665 0.2328 0.00012205 524.2822555943928 104.43 1.3227 100.08 99.619 100.94 -4.346 89 37 4 0 0 0 0.29692 1 20054 20054 43.858 0.085901 1 14855000 16371 10174 10695 10698 16471 16471 0.028142957953377845 GIEEFYVA 8 Unmodified _GIEEFYVA_ 0 0 0 REV__SPTA1|p.A751V|1|0.27|ENSG00000163554|chr1:158662914-158662914|G/A|missense_variant REV__SPTA1|p.A751V|1|0.27|ENSG00000163554|chr1:158662914-158662914|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16522216796875 3 309.820126 926.438549 -0.3345 -0.00010363 0.050787 1.5735E-05 -0.28371 -8.7899E-05 309.8200913650885 47.428 0.31562 44.559 44.391 44.706 -2.869 12 8 2 0 0 0 0.75713 1 8941 8941 6.2058 6.2058 1 1094100 + 16372 24730 10696 10699 16472 16472 -0.027612991220962613 GIEEFYVA 8 Unmodified _GIEEFYVA_ 0 0 0 REV__SPTA1|p.A751V|1|0.27|ENSG00000163554|chr1:158662914-158662914|G/A|missense_variant REV__SPTA1|p.A751V|1|0.27|ENSG00000163554|chr1:158662914-158662914|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1711120605469 3 309.820126 926.438549 0.0072392 2.2428E-06 0.15166 4.6986E-05 0.1589 4.9229E-05 309.82009393215367 47.561 0.4125 44.619 44.342 44.755 -2.9421 20 11 2 0 0 0 0.64512 1 8655 8655 19.257 4.4187 1 1124000 + 16373 24730 10696 10699 16473 16473 -0.027612991220962613 GIEEFYVA 8 Unmodified _GIEEFYVA_ 0 0 0 REV__SPTA1|p.A751V|1|0.27|ENSG00000163554|chr1:158662914-158662914|G/A|missense_variant REV__SPTA1|p.A751V|1|0.27|ENSG00000163554|chr1:158662914-158662914|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 309.820126 926.438549 -0.3345 -0.00010363 0.050787 1.5735E-05 -0.28371 -8.7899E-05 309.8200913650885 47.428 0.31562 44.559 44.391 44.706 -2.869 -0.030158 -6.8575E-05 NaN 19.257 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1094100 + 16374 24730 10696 10699 -0.027612991220962613 GIEEFYVA 8 Unmodified _GIEEFYVA_ 0 0 0 REV__SPTA1|p.A751V|1|0.27|ENSG00000163554|chr1:158662914-158662914|G/A|missense_variant REV__SPTA1|p.A751V|1|0.27|ENSG00000163554|chr1:158662914-158662914|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 309.820126 926.438549 0.0072392 2.2428E-06 0.15166 4.6986E-05 0.1589 4.9229E-05 309.82009393215367 47.561 0.4125 44.619 44.342 44.755 -2.9421 0.030158 2.518E-05 NaN 19.257 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1124000 + 16375 24730 10696 10699 -0.027612991220962613 GIEEQLGKEIK 11 Unmodified _GIEEQLGKEIK_ 0 0 0 ENST00000441966.1_1_6:29297405-29297519:-|nuORF ENST00000441966.1_1_6:29297405-29297519:-|nuORF ENST00000441966.1_1_6:29297405-29297519:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7520751953125 2 622.34826 1242.68197 0.57325 0.00035676 0.77449 0.000482 1.3477 0.00083876 622.8528740848117 152.81 0.13965 147.59 147.47 147.61 -5.2209 6 3 2 0 0 0 0.77729 1 29616 29616 23.79 0 1 1635200 16376 9896 10697 10700 16474 16474 0.07033320532127618 GIEKAEDSI 9 Unmodified _GIEKAEDSI_ 0 0 0 REV__tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1 REV__tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2452392578125 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 101.42 1 97.102 96.602 97.602 -4.3208 0 0 0 0.19451 1 19411 19411 1.2148 0.80657 1 + 16377 25269 10698 10701 16475 16475 -0.0054283292729451205 GIFERTQTI 9 Unmodified _GIFERTQTI_ 0 0 0 REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2623901367188 2 532.790381 1063.56621 -0.23356 -0.00012444 0.16223 8.6434E-05 -0.071331 -3.8005E-05 532.7904132968933 65.185 0.59303 65.185 64.924 65.518 0 29 16 2 0 0 0 0.09143 4 12552 12518;12552;12575;12617 58.679 11.073 1 10121000 + 16378 22725 10699 10702 16476;16477;16478;16479 16477 0.036968414719467546 GIFERTQTI 9 Unmodified _GIFERTQTI_ 0 0 0 REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2810668945312 2 532.790381 1063.56621 0.72436 0.00038593 -0.77018 -0.00041034 -0.045817 -2.4411E-05 532.7898746775264 68.463 0.66994 64.927 64.656 65.326 -3.5362 40 18 3 0 0 0 0.11032 1 12914 12914 52.268 10.429 1 7902200 + 16379 22725 10699 10702 16480 16480 0.036968414719467546 GIFERTQTI 9 Unmodified _GIFERTQTI_ 0 0 0 REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.273193359375 2 532.790381 1063.56621 0.38248 0.00020378 -0.391 -0.00020832 -0.0085136 -4.536E-06 532.7901247736737 68.408 0.69073 65.017 64.596 65.287 -3.3903 44 19 3 0 0 0 0.09143 2 12877 12877;12949 58.679 12.979 1 5938800 + 16380 22725 10699 10702 16481;16482 16481 0.036968414719467546 GIFERTQTI 9 Unmodified _GIFERTQTI_ 0 0 0 REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.790381 1063.56621 0.014812 7.8919E-06 0.029327 1.5625E-05 0.044139 2.3517E-05 532.7902931444278 68.039 0.75656 64.931 64.556 65.312 -3.1086 -0.084171 0.00024665 NaN 58.679 43 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6290500 + 16381 22725 10699 10702 0.036968414719467546 GIFERTQTI 9 Unmodified _GIFERTQTI_ 0 0 0 REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.790381 1063.56621 0.72436 0.00038593 -0.77018 -0.00041034 -0.045817 -2.4411E-05 532.7898746775264 68.463 0.66994 64.927 64.656 65.326 -3.5362 -0.088047 -0.00060529 NaN 58.679 40 18 3 NaN NaN NaN NaN 0 NaN NaN 0 7902200 + 16382 22725 10699 10702 0.036968414719467546 GIFGGHIRSV 10 Unmodified _GIFGGHIRSV_ 0 0 0 ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10 ENSG00000103194|ENST00000219473|USP10 ENSG00000103194|ENST00000219473|USP10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2780151367188 2 521.793258 1041.57196 0.51478 0.00026861 -0.56325 -0.0002939 -0.048468 -2.529E-05 521.792933781526 81.421 0.62294 81.421 81.127 81.75 0 46 17 3 0 0 0 0.20076 1 15898 15898 44.392 15.897 1 14822000 16383 2172 10700 10703 16483 16483 0.05283984774268902 GIFGGHIRSV 10 Unmodified _GIFGGHIRSV_ 0 0 0 ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10 ENSG00000103194|ENST00000219473|USP10 ENSG00000103194|ENST00000219473|USP10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2824096679688 2 521.793258 1041.57196 -0.51564 -0.00026906 0.22346 0.0001166 -0.29217 -0.00015245 521.7933104080628 85.147 0.76083 81.238 80.909 81.67 -3.9093 49 21 3 0 0 0 0.5697 1 16184 16184 20.871 0.41751 1 8884500 16384 2172 10700 10703 16484 16484 0.05283984774268902 GIFGGHIRSV 10 Unmodified _GIFGGHIRSV_ 0 0 0 ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10 ENSG00000103194|ENST00000219473|USP10 ENSG00000103194|ENST00000219473|USP10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2632446289062 2 521.793258 1041.57196 0.058997 3.0784E-05 -0.12877 -6.7189E-05 -0.069769 -3.6405E-05 521.7931878431225 84.951 0.72658 81.239 80.905 81.632 -3.7117 52 20 3 0 0 0 0.37762 1 16246 16246 31.636 8.8995 1 9651700 16385 2172 10700 10703 16485 16485 0.05283984774268902 GIFGGHIRSV 10 Unmodified _GIFGGHIRSV_ 0 0 0 ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10 ENSG00000103194|ENST00000219473|USP10 ENSG00000103194|ENST00000219473|USP10 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.793258 1041.57196 -0.51564 -0.00026906 0.22346 0.0001166 -0.29217 -0.00015245 521.7933104080628 85.147 0.76083 81.238 80.909 81.67 -3.9093 -0.072506 0.00033372 NaN 44.392 49 21 3 NaN NaN NaN NaN 0 NaN NaN 0 8884500 16386 2172 10700 10703 0.05283984774268902 GIFQRCWR 8 Unmodified _GIFQRCWR_ 0 0 0 ENST00000355413.8_1_7:141333741-141333777:+|nuORF ENST00000355413.8_1_7:141333741-141333777:+|nuORF ENST00000355413.8_1_7:141333741-141333777:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.273193359375 2 533.274178 1064.5338 NaN NaN NaN NaN NaN NaN NaN 68.217 1 64.827 64.327 65.327 -3.3903 0 0 0 0.22834 1 12875 12875 1.4551 0 1 16387 8953 10701 10704 16486 16486 0.004117755879406104 GIFVQHRV 8 Unmodified _GIFVQHRV_ 0 0 0 ENST00000551770.5_2_12:49397026-49397678:-|nuORF;ENST00000546531.5_1_12:49396684-49399341:-|nuORF;nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1 ENST00000551770.5_2_12:49397026-49397678:-|nuORF ENST00000551770.5_2_12:49397026-49397678:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7382507324219 2 478.277244 954.539935 NaN NaN NaN NaN NaN NaN NaN 144.73 1 139.78 139.28 140.28 -4.9445 0 0 0 0.23664 1 27963 27963 3.2813 3.1584 1 16388 6752 10702 10705 16487 16487 0.060846170911418085 GIFYSYVI 8 Unmodified _GIFYSYVI_ 0 0 0 REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24072265625 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 130.99 1 126.35 125.85 126.85 -4.6359 0 0 0 0.23294 1 25813 25813 0.30703 0.24304 1 + 16389 13707 10703 10706 16488 16488 0.013841681542771767 GIGDDKEVK 9 Unmodified _GIGDDKEVK_ 0 0 0 REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2541809082031 2 480.753464 959.492375 0.062584 3.0088E-05 -0.3297 -0.0001585 -0.26711 -0.00012842 480.753313121992 50.713 0.62532 47.668 47.356 47.981 -3.0453 41 17 3 0 0 0 0.48644 1 9278 9278 20.454 5.2051 1 3496000 + 16390 24953 10704 10707 16489 16489 0.011008733096218748 GIGEPAGLDK 10 Unmodified _GIGEPAGLDK_ 0 0 0 REV__IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant REV__IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73724365234375 2 478.756007 955.497461 NaN NaN NaN NaN NaN NaN NaN 97.498 1 93.4 92.9 93.9 -4.0978 0 0 0 0.22527 1 19131 19131 21.537 6.6987 1 + 16391 17568 10705 10708 16490 16490 0.017931771722373924 GIGITEFHVL 10 Unmodified _GIGITEFHVL_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant;CCDC168|p.A4132Qfs*29|1|0.23|ENSG00000175820|chr13:102738304-102738304|T/-|frameshift_variant;CCDC168|p.A3265Vfs*21|1|0.06|ENSG00000175820|chr13:102740903-102740904|-/GAAGAAAAATATA|frameshift_variant;CCDC168|p.L3176Ifs*8|1|0.42|ENSG00000175820|chr13:102741171-102741172|-/T|frameshift_variant;CCDC168|p.F3005Lfs*18|2|0.31|ENSG00000175820|chr13:102741682-102741682|A/-|frameshift_variant;CCDC168|p.T2792Dfs*27|1|0.25|ENSG00000175820|chr13:102742324-102742325|-/T|frameshift_variant;CCDC168|p.M1116Nfs*6|1|0.25|ENSG00000175820|chr13:102747350-102747351|-/T|frameshift_variant;CCDC168|p.N2119Kfs*18|1|0.41|ENSG00000175820|chr13:102744340-102744341|-/T|frameshift_variant;CCDC168|p.I1655Nfs*8|1|0.07|ENSG00000175820|chr13:102745733-102745734|-/AACTTAAAACAAT|frameshift_variant;CCDC168|p.N1192Tfs*3|1|0.1|ENSG00000175820|chr13:102747122-102747122|T/-|frameshift_variant;CCDC168|p.M1116Wfs*8|1|0.14|ENSG00000175820|chr13:102747351-102747351|T/-|frameshift_variant;CCDC168|p.L758Wfs*27|1|0.11|ENSG00000175820|chr13:102748424-102748424|A/-|frameshift_variant ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7732543945312 2 543.303124 1084.5917 0.20675 0.00011233 -0.19893 -0.00010808 0.007817 4.247E-06 543.3029608323462 131.99 0.94853 127.35 126.85 127.8 -4.6399 59 26 3 0 0 0 0.57735 2 25941 25941;26086 20.454 8.213 1 15099000 16392 414 10706 10709 16491;16492 16491 0.05278315994382865 GIGMYMKML 9 Unmodified _GIGMYMKML_ 0 0 0 ENST00000469716.1_1_7:95053779-95064326:-|nuORF ENST00000469716.1_1_7:95053779-95064326:-|nuORF ENST00000469716.1_1_7:95053779-95064326:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2734985351562 2 522.257959 1042.50137 NaN NaN NaN NaN NaN NaN NaN 157.16 1 151.87 151.37 152.37 -5.2854 0 0 0 0.23411 1 30494 30494 13.508 4.1604 1 16393 10185 10707 10710 16493 16493 -0.01818515921559083 GIGMYMKML 9 Unmodified _GIGMYMKML_ 0 0 0 ENST00000469716.1_1_7:95053779-95064326:-|nuORF ENST00000469716.1_1_7:95053779-95064326:-|nuORF ENST00000469716.1_1_7:95053779-95064326:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2576293945312 2 522.257959 1042.50137 NaN NaN NaN NaN NaN NaN NaN 170.65 1 165.78 165.28 166.28 -4.873 0 0 0 0.21408 1 33784 33784 19.439 5.9311 1 16394 10185 10707 10710 16494 16494 -0.01818515921559083 GIGRPFWE 8 Unmodified _GIGRPFWE_ 0 0 0 REV__ENST00000566814.1_1_22:26908524-26908713:+|nuORF REV__ENST00000566814.1_1_22:26908524-26908713:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24639892578125 2 481.248152 960.481751 NaN NaN NaN NaN NaN NaN NaN 143.13 1 143.13 142.63 143.63 0 0 0 0 0.23487 1 28553 28553 0.25148 0.12861 1 + 16395 23124 10708 10711 16495 16495 -7.064554154112557E-05 GIGSSVKGVTL 11 Unmodified _GIGSSVKGVTL_ 0 0 0 REV__nc|ENSG00000133816|O94851|MICAL2 REV__nc|ENSG00000133816|O94851|MICAL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 509.2865295410156 2 509.300581 1016.58661 NaN NaN NaN NaN NaN NaN NaN 148.53 1 143.82 143.32 144.32 -4.7095 0 0 0 0.22501 1 29497 29497 12.241 0.60036 1 + 16396 24044 10709 10712 16496 16496 0.07898012131772703 GIGTDTSIPV 10 Unmodified _GIGTDTSIPV_ 0 0 0 TOP3B|p.A512T|1|0.47|ENSG00000100038|chr22:21960441-21960441|C/T|missense_variant TOP3B|p.A512T|1|0.47|ENSG00000100038|chr22:21960441-21960441|C/T|missense_variant TOP3B|p.A512T|1|0.47|ENSG00000100038|chr22:21960441-21960441|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2391662597656 2 480.25584 958.497126 0.23965 0.00011509 0.019712 9.4669E-06 0.25936 0.00012456 480.2558619137213 115.34 0.84712 110.79 110.4 111.25 -4.555 38 23 2 0 0 0 0.48849 1 22116 22116 0.26539 0.26539 1 2434400 16397 25870 10710 10713 16497 16497 0.016217574523807343 GIHFSIVSP 9 Unmodified _GIHFSIVSP_ 0 0 0 ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;MED25|p.P201Rfs*13|3|0.22|ENSG00000104973|chr19:49829856-49829856|C/-|frameshift_variant;MED25|p.A202Gfs*197|1|0.36|ENSG00000104973|chr19:49829855-49829856|-/C|frameshift_variant ENSG00000104973|ENST00000312865|MED25 ENSG00000104973|ENST00000312865|MED25 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7315368652344 2 478.763635 955.512717 0.069359 3.3207E-05 2.8633 0.0013708 2.9327 0.0014041 478.7648227484137 58.09 0.13946 54.885 54.779 54.919 -3.2052 5 3 2 0 0 0 0.77732 1 10827 10827 12.532 5.2423 1 189770 16398 2273 10711 10714 16498 16498 0.033180887601020004 GIHFVNQPWY 10 Unmodified _GIHFVNQPWY_ 0 0 0 nc|ENSG00000146352|Q5SYC1-2|CLVS2;CLVS2|p.L228Ffs*4|1|0.1|ENSG00000146352|chr6:123055808-123055809|-/T|frameshift_variant;ENSG00000146352|ENST00000275162|CLVS2 nc|ENSG00000146352|Q5SYC1-2|CLVS2 nc|ENSG00000146352|Q5SYC1-2|CLVS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.766357421875 2 630.811648 1259.60874 NaN NaN NaN NaN NaN NaN NaN 56.884 1 53.708 53.208 54.208 -3.1761 0 0 0 0.22588 1 10595 10595 3.9444 0.3479 1 16399 590 10712 10715 16499 16499 -0.01067763399805699 GIHRVWKDL 9 Unmodified _GIHRVWKDL_ 0 0 0 ENSG00000110871|ENST00000288532|COQ5 ENSG00000110871|ENST00000288532|COQ5 ENSG00000110871|ENST00000288532|COQ5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21588134765625 3 375.217214 1122.62981 NaN NaN NaN NaN NaN NaN NaN 12.875 1 11.754 11.254 12.254 -1.1206 0 0 0 0.23508 1 1574 1574 0.96228 0.26461 1 16400 2594 10713 10716 16500 16500 0.07340246699709496 GIHVTSPLSGL 11 Unmodified _GIHVTSPLSGL_ 0 0 0 REV__DOCK3|p.M819L|1|0.32|ENSG00000088538|chr3:51270914-51270914|A/T|missense_variant REV__DOCK3|p.M819L|1|0.32|ENSG00000088538|chr3:51270914-51270914|A/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.258544921875 2 540.806031 1079.59751 0.28535 0.00015432 0.88835 0.00048042 1.1737 0.00063474 540.8059882110143 122.42 0.20335 122.42 122.27 122.47 0 6 5 2 0 0 0 0.89764 1 24117 24117 8.1555 4.559 1 2784400 + 16401 13736 10714 10717 16501 16501 0.060894145060501614 GIIKILLRRP 10 Unmodified _GIIKILLRRP_ 0 0 0 ENSG00000163823|ENST00000296140|CCR1 ENSG00000163823|ENST00000296140|CCR1 ENSG00000163823|ENST00000296140|CCR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2689819335938 2 589.908425 1177.8023 0.43274 0.00025528 -0.50367 -0.00029712 -0.070931 -4.1843E-05 589.9060439447677 132.82 0.14487 128.18 128.09 128.23 -4.6399 6 3 2 0 0 0 0.91149 1 26181 26181 1.8442 0.36234 1 1308100 16402 5470 10715 10718 16502 16502 0.22050818107095438 GIINSLGAAV 10 Unmodified _GIINSLGAAV_ 0 0 0 REV__ENSG00000142408|ENST00000270458|CACNG8 REV__ENSG00000142408|ENST00000270458|CACNG8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2383117675781 2 457.768917 913.523281 0.26234 0.00012009 0.32956 0.00015086 0.5919 0.00027095 457.7690116435979 91.384 0.6128 87.29 86.917 87.53 -4.0946 22 17 2 0 0 0 0.15224 1 17386 17386 47.749 9.5975 1 838690 + 16403 16670 10716 10719 16503 16503 0.06306071414530834 GIINSLGAAV 10 Unmodified _GIINSLGAAV_ 0 0 0 REV__ENSG00000142408|ENST00000270458|CACNG8 REV__ENSG00000142408|ENST00000270458|CACNG8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.768917 913.523281 -0.14735 -6.7451E-05 0.38127 0.00017453 0.23392 0.00010708 457.769047819919 91.069 0.4419 87.209 86.963 87.405 -3.8595 -0.040257 2.3861E-05 NaN 47.749 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 681550 + 16404 16670 10716 10719 0.06306071414530834 GIITDTTSI 9 Unmodified _GIITDTTSI_ 0 0 0 ENSG00000175893|ENST00000380916|ZDHHC21 ENSG00000175893|ENST00000380916|ZDHHC21 ENSG00000175893|ENST00000380916|ZDHHC21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5396728515625 2 460.75039 919.486227 0.27 0.0001244 0.045729 2.1069E-05 0.31573 0.00014547 460.75034911742847 110.18 0.79234 110.18 109.82 110.61 0 57 22 3 0 0 0 0.67531 1 21595 21595 7.9102 0 1 9286300 16405 6439 10717 10720 16504 16504 0.023263550780939113 GIIYRDLKPE 10 Unmodified _GIIYRDLKPE_ 0 0 0 nc|ENSG00000185532|Q13976|PRKG1;nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;ENSG00000185532|ENST00000373980|PRKG1;nc|ENSG00000117676|Q15418-4|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;nc|ENSG00000071242|Q15349-3|RPS6KA2;ENSG00000177189|ENST00000379565|RPS6KA3;ENSG00000117676|ENST00000374168|RPS6KA1;ENSG00000071242|ENST00000265678|RPS6KA2;RPS6KA3|p.N713Rfs*13|1|0.08|ENSG00000177189|chrX:20155483-20155484|-/AGCACAAGTTC|frameshift_variant;ENST00000474934.1_1_1:26877949-26879989:+|nuORF;ENST00000525088.5_1_11:67200063-67200514:+|nuORF;nc|ENSG00000117676|Q15418-3|RPS6KA1;ENSG00000175634|ENST00000312629|RPS6KB2;RPS6KA2|p.H197Afs*3|1|0.32|ENSG00000071242|chr6:166500902-166500903|-/C|frameshift_variant;ENST00000527264.5_1_1:26873736-26880810:+|nuORF;ENST00000577881.1_1_17:60316192-60324457:-|nuORF;nc|ENSG00000071242|Q15349-2|RPS6KA2;PRKG2|p.K707Yfs*4|1|0.03|ENSG00000138669|chr4:81104377-81104378|-/TAGTAGATGTA|frameshift_variant;nc|ENSG00000138669|Q13237-2|PRKG2;ENSG00000138669|ENST00000264399|PRKG2;ENST00000472940.5_1_17:58008327-58013674:+|nuORF;nc|ENSG00000108443|P23443-4|RPS6KB1;nc|ENSG00000108443|P23443-3|RPS6KB1;nc|ENSG00000108443|P23443-5|RPS6KB1;nc|ENSG00000108443|P23443-2|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1 nc|ENSG00000185532|Q13976|PRKG1;PRKG2|p.K707Yfs*4|1|0.03|ENSG00000138669|chr4:81104377-81104378|-/TAGTAGATGTA|frameshift_variant;ENST00000472940.5_1_17:58008327-58013674:+|nuORF nc|ENSG00000185532|Q13976|PRKG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2963256835938 2 602.340238 1202.66592 NaN NaN NaN NaN NaN NaN NaN 139.51 1 134.56 134.06 135.06 -4.952 0 0 0 0.22588 1 26836 26836 8.7454 1.6437 1 16406 6999;4198;2474 10718 10721 16505 16505 0.07269659085909552 GIKIAEVHER 10 Unmodified _GIKIAEVHER_ 0 0 0 REV__nc|ENSG00000122952|O95229-2|ZWINT REV__nc|ENSG00000122952|O95229-2|ZWINT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3270874023438 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 129.1 1 124.28 123.78 124.78 -4.817 0 0 0 2.8426 1 24782 24782 6.6304 0 1 + 16407 15709 10719 10722 16506 16506 0.07655908145943613 GIKKPHRY 8 Unmodified _GIKKPHRY_ 0 0 0 ENSG00000269466|ENST00000598383|H3Y1;ENSG00000268799|ENST00000600799|H3Y2 ENSG00000269466|ENST00000598383|H3Y1 ENSG00000269466|ENST00000598383|H3Y1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.9991149902344 3 333.534654 997.582134 0.046931 1.5653E-05 -1.0478 -0.00034949 -1.0009 -0.00033384 333.8685674387258 51.556 0.45177 48.511 48.368 48.82 -3.0453 19 12 2 0 0 0 1.0276 1 9444 9444 0 0 1 935660 16408 7997 10720 10723 16507 16507 0.08324592499502614 GIKMAKKLKQV 11 Unmodified _GIKMAKKLKQV_ 0 0 0 ENST00000342992.10_3_2:179475854-179475932:-|nuORF ENST00000342992.10_3_2:179475854-179475932:-|nuORF ENST00000342992.10_3_2:179475854-179475932:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7694091796875 2 622.399576 1242.7846 0.65786 0.00040945 -1.2096 -0.00075288 -0.55178 -0.00034343 622.3991213607732 162.18 0.10609 156.99 156.92 157.03 -5.1878 4 2 2 0 0 0 0.88655 1 31488 31488 0.58532 0 1 2337600 16409 8868 10721 10724 16508 16508 0.17291734789887414 GIKVEETSG 9 Unmodified _GIKVEETSG_ 0 0 0 REV__ENSG00000138758|ENST00000264893|SEPTIN11 REV__ENSG00000138758|ENST00000264893|SEPTIN11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23992919921875 2 460.24019 918.465826 0.24109 0.00011096 -0.45791 -0.00021075 -0.21682 -9.9788E-05 460.2398491412787 35.523 0.4105 35.523 35.346 35.757 0 19 11 2 0 0 0 0.25976 1 6555 6555 17.113 15.421 1 648440 + 16410 16486 10722 10725 16509 16509 0.0033318441829806034 GIKVEETSG 9 Unmodified _GIKVEETSG_ 0 0 0 REV__ENSG00000138758|ENST00000264893|SEPTIN11 REV__ENSG00000138758|ENST00000264893|SEPTIN11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2309265136719 2 460.24019 918.465826 0.21635 9.9575E-05 -0.73394 -0.00033779 -0.51758 -0.00023821 460.2398651508732 37.616 0.44846 35.279 35.016 35.464 -2.3375 16 12 2 0 0 0 0.5428 2 6661 6661;6679 4.897 2.3985 1 483580 + 16411 16486 10722 10725 16510;16511 16510 0.0033318441829806034 GILAVFTW 8 Unmodified _GILAVFTW_ 0 0 0 ENST00000437852.2_1_9:116612983-116613133:-|nuORF ENST00000437852.2_1_9:116612983-116613133:-|nuORF ENST00000437852.2_1_9:116612983-116613133:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7579650878906 2 453.757821 905.501089 NaN NaN NaN NaN NaN NaN NaN 121.96 1 117.27 116.77 117.77 -4.6873 0 0 0 0.23749 1 23413 23413 0.12286 0.049601 1 16412 9855 10723 10726 16512 16512 0.04455891736745343 GIMELVHY 8 Unmodified _GIMELVHY_ 0 0 0 REV__nc|ENSG00000163482|Q9NRP7-2|STK36 REV__nc|ENSG00000163482|Q9NRP7-2|STK36 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24468994140625 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 107.47 1 107.47 106.97 107.97 0 0 0 0 0.22636 1 21133 21133 1.7423 0.52744 1 + 16413 17575 10724 10727 16513 16513 -0.007929598659416115 GIMHKLLFS 9 Unmodified _GIMHKLLFS_ 0 0 0 REV__sp|P16732|TRM3_HCMVATripartiteterminasesubunit3OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM3PE=1SV=1 REV__sp|P16732|TRM3_HCMVATripartiteterminasesubunit3OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM3PE=1SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7003784179688 2 523.296788 1044.57902 0.715 0.00037416 1.3442 0.00070344 2.0592 0.0010776 523.2974553977826 108.95 0.66429 104.77 104.49 105.15 -4.1826 32 18 2 0 0 0 0.69192 1 20983 20983 14.838 0 1 2136200 + 16414 24686 10725 10728 16514 16514 0.05851581330489353 GINDKTMVRNL 11 Unmodified _GINDKTMVRNL_ 0 0 0 REV__nc|ENSG00000138767|Q96LI5-2|CNOT6L REV__nc|ENSG00000138767|Q96LI5-2|CNOT6L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7786254882812 2 630.840079 1259.66561 NaN NaN NaN NaN NaN NaN NaN 132.63 1 127.78 127.28 128.28 -4.8527 0 0 0 0.22683 1 25478 25478 10.8 1.4164 1 + 16415 15334 10726 10729 16515 16515 0.04615916094394379 GINKCEFCEMS 11 Unmodified _GINKCEFCEMS_ 0 0 0 ENST00000586138.5_3_19:37998087-37998189:+|nuORF ENST00000586138.5_3_19:37998087-37998189:+|nuORF ENST00000586138.5_3_19:37998087-37998189:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7548828125 2 630.756509 1259.49846 NaN NaN NaN NaN NaN NaN NaN 165.73 1 160.94 160.44 161.44 -4.7898 0 0 0 0.23634 1 33218 33218 3.2813 0.28607 1 16416 11544 10727 10730 16516 16516 -0.1209043583703533 GIPIMRWLSRQ 11 Unmodified _GIPIMRWLSRQ_ 0 0 0 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 678.7899780273438 2 678.882081 1355.74961 NaN NaN NaN NaN NaN NaN NaN 30.904 1 28.877 28.377 29.377 -2.0264 0 0 0 0.23087 1 5316 5316 7.609 2.7119 1 16417 438 10728 10731 16517 16517 0.08596491981938925 GIPYRQPGPP 10 Unmodified _GIPYRQPGPP_ 0 0 0 REV__ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant REV__ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2617797851562 2 541.293091 1080.57163 0.21788 0.00011794 0.11097 6.0068E-05 0.32885 0.00017801 541.2931322709069 59.792 1.5778 56.568 55.878 57.456 -3.2237 101 44 3 0 0 0 0.82094 1 11087 11087 15.847 0 1 2074600 + 16418 13115 10729 10732 16518 16518 0.03456565054420935 GIQEKNELY 9 Unmodified _GIQEKNELY_ 0 0 0 REV__nc|ENSG00000109534|Q9NY12-2|GAR1 REV__nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7819213867188 2 547.279846 1092.54514 0.6673 0.0003652 0.80726 0.0004418 1.4746 0.00080699 547.7819615596186 77.782 0.72989 77.782 77.392 78.122 0 42 20 3 0 0 0 0.50294 1 15172 15172 19.439 0.18201 1 3331200 + 16419 15165 10730 10733 16519 16519 0.002568313724395921 GIQLGSFHA 9 Unmodified _GIQLGSFHA_ 0 0 0 ENST00000486828.6_1_5:176910647-176917003:-|nuORF ENST00000486828.6_1_5:176910647-176917003:-|nuORF ENST00000486828.6_1_5:176910647-176917003:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24639892578125 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 131.22 1 126.58 126.08 127.08 -4.6359 0 0 0 0.22621 1 25860 25860 15.847 0.078963 1 16420 10460 10731 10734 16520 16520 0.009566315832330474 GIQNMHID 8 Unmodified _GIQNMHID_ 0 0 0 REV__nc|ENSG00000083444|Q02809-2|PLOD1 REV__nc|ENSG00000083444|Q02809-2|PLOD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700134277344 3 309.81661 926.428001 -0.28784 -8.9177E-05 0.93316 0.00028911 0.64533 0.00019993 309.8168552196752 75.819 0.79645 75.819 75.476 76.273 0 56 22 3 0 0 0 0.76728 1 14810 14810 3.9444 0 1 11313000 + 16421 14450 10732 10735 16521 16521 -0.038156050481802595 GIQVYDIGP 9 Unmodified _GIQVYDIGP_ 0 0 0 REV__nc|ENSG00000092208|O14893-3|GEMIN2 REV__nc|ENSG00000092208|O14893-3|GEMIN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25408935546875 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 81.434 1 81.434 80.934 81.934 0 0 0 0 0.23411 1 15858 15858 13.508 0.97634 1 + 16422 14584 10733 10736 16522 16522 0.009820786605587273 GIRVQPTW 8 Unmodified _GIRVQPTW_ 0 0 0 ENST00000571482.2_1_17:80678682-80680728:+|nuORF ENST00000571482.2_1_17:80678682-80680728:+|nuORF ENST00000571482.2_1_17:80678682-80680728:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7444152832031 2 478.769252 955.52395 0.19931 9.5424E-05 -2.6971 -0.0012913 -2.4978 -0.0011958 478.7695373115076 133.89 0.32076 129.08 128.81 129.13 -4.8175 10 8 2 0 0 0 0.66265 1 25740 25740 18.135 2.2878 1 623140 16423 11421 10734 10737 16523 16523 0.0444091085423679 GIRVQPTW 8 Unmodified _GIRVQPTW_ 0 0 0 ENST00000571482.2_1_17:80678682-80680728:+|nuORF ENST00000571482.2_1_17:80678682-80680728:+|nuORF ENST00000571482.2_1_17:80678682-80680728:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.769252 955.52395 -0.068168 -3.2637E-05 -1.7832 -0.00085376 -1.8514 -0.00088639 478.76968828452215 129.21 0.20493 129.21 129.13 129.33 0 0.068938 0.00050487 NaN 18.135 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 587170 16424 11421 10734 10737 0.0444091085423679 GISDLQQL 8 Unmodified _GISDLQQL_ 0 0 0 nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12 nc|ENSG00000173809|Q587J7|TDRD12 nc|ENSG00000173809|Q587J7|TDRD12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22772216796875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 98.684 1 94.728 94.228 95.228 -3.9564 0 0 0 0.10698 1 18940 18940 6.3914 0 1 16425 12469 10735 10738 16524 16524 0.019015056264720442 GISGAIGPPGP 11 Unmodified _GISGAIGPPGP_ 0 0 0 nc|ENSG00000111799|Q99715-2|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1 nc|ENSG00000111799|Q99715-2|COL12A1 nc|ENSG00000111799|Q99715-2|COL12A1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.53631591796875 2 461.753267 921.491981 NaN NaN NaN NaN NaN NaN NaN 66.001 1 62.954 62.454 63.454 -3.047 0 0 0 0.224 1 12781 12781 13.042 0.80181 1 16426 611 10736 10739 16525 16525 0.028094983804294316 GISIRFCSRCC 11 Unmodified _GISIRFCSRCC_ 0 0 0 ENST00000394789.7_1_4:103853381-103866373:-|nuORF ENST00000394789.7_1_4:103853381-103866373:-|nuORF ENST00000394789.7_1_4:103853381-103866373:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7562255859375 2 622.788478 1243.5624 0.61224 0.00038129 -3.7075 -0.002309 -3.0953 -0.0019277 622.7866295720503 156.85 0.10313 151.58 151.52 151.62 -5.2712 4 2 2 0 0 0 0.7348 1 30418 30418 9.3831 3.1773 1 835390 16427 9418 10737 10740 16526 16526 -0.04963610889399206 GISRINGQL 9 Unmodified _GISRINGQL_ 0 0 0 ENST00000451080.5_1_2:202672326-202741280:+|nuORF;nc|ENSG00000138395|Q96Q40-6|CDK15;ENST00000488419.1_1_2:202671387-202725552:+|nuORF;nc|ENSG00000138395|Q96Q40-4|CDK15;nc|ENSG00000138395|Q96Q40-3|CDK15;CDK15|p.C410Wfs*2|1|0.09|ENSG00000138395|chr2:201890832-201890833|-/G|frameshift_variant;nc|ENSG00000138395|Q96Q40-5|CDK15;ENSG00000138395|ENST00000652192|CDK15 ENST00000451080.5_1_2:202672326-202741280:+|nuORF ENST00000451080.5_1_2:202672326-202741280:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73779296875 2 479.277441 956.540328 -0.04014 -1.9238E-05 0.18837 9.0281E-05 0.14823 7.1042E-05 479.27751344654666 22.675 0.39118 22.675 22.466 22.857 0 26 10 3 0 0 0 0.84208 1 3814 3814 3.9444 3.5437 1 2579100 16428 469 10738 10741 16527 16527 0.06031992020336929 GISTGATL 8 Unmodified _GISTGATL_ 0 0 0 tr|U7ST16|U7ST16_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01243PE=4SV=1 tr|U7ST16|U7ST16_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01243PE=4SV=1 tr|U7ST16|U7ST16_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01243PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 99.272 1 99.272 98.772 99.772 0 0 0 0 0.21486 1 19468 19468 5.2307 0 1 16429 26121 10739 10742 16528 16528 0.015661625349594033 GISYTDEKKY 10 Unmodified _GISYTDEKKY_ 0 0 0 REV__ATG101|p.G43D|1|0.07|ENSG00000123395|chr12:52073778-52073778|G/A|missense_variant REV__ATG101|p.G43D|1|0.07|ENSG00000123395|chr12:52073778-52073778|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.28466796875 2 602.298236 1202.58192 NaN NaN NaN NaN NaN NaN NaN 158.46 1 153.19 152.69 153.69 -5.2712 0 0 0 0.22588 1 30746 30746 7.2892 0 1 + 16430 13142 10740 10743 16529 16529 -0.011269168016724507 GITDVTSAHY 10 Unmodified _GITDVTSAHY_ 0 0 0 ENST00000522850.1_1_8:103876781-103877398:+|nuORF ENST00000522850.1_1_8:103876781-103877398:+|nuORF ENST00000522850.1_1_8:103876781-103877398:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27099609375 2 532.256371 1062.49819 -0.11091 -5.9032E-05 0.27539 0.00014658 0.16449 8.7549E-05 532.2563628361124 51.612 0.78991 48.73 48.28 49.07 -2.8824 66 22 4 0 0 0 0.664 1 9782 9782 14.838 0.93222 1 8325100 16431 10864 10741 10744 16530 16530 -0.030560281787074928 GITDVTSAHY 10 Unmodified _GITDVTSAHY_ 0 0 0 ENST00000522850.1_1_8:103876781-103877398:+|nuORF ENST00000522850.1_1_8:103876781-103877398:+|nuORF ENST00000522850.1_1_8:103876781-103877398:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2730712890625 2 532.256371 1062.49819 0.41166 0.00021911 -0.35051 -0.00018656 0.061149 3.2547E-05 532.2560001067463 51.729 0.70022 48.684 48.403 49.104 -3.0453 67 19 4 0 0 0 0.71097 1 9472 9472 10.074 0.6908 1 6645400 16432 10864 10741 10744 16531 16531 -0.030560281787074928 GITDVTSAHY 10 Unmodified _GITDVTSAHY_ 0 0 0 ENST00000522850.1_1_8:103876781-103877398:+|nuORF ENST00000522850.1_1_8:103876781-103877398:+|nuORF ENST00000522850.1_1_8:103876781-103877398:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2701416015625 2 532.256371 1062.49819 -0.0064312 -3.423E-06 -0.10027 -5.3371E-05 -0.1067 -5.6794E-05 532.2561942647217 51.727 0.73165 48.675 48.306 49.038 -3.0517 66 20 4 0 0 0 0.664 1 9515 9515 14.838 2.5976 1 6162000 16433 10864 10741 10744 16532 16532 -0.030560281787074928 GITDVTSAHY 10 Unmodified _GITDVTSAHY_ 0 0 0 ENST00000522850.1_1_8:103876781-103877398:+|nuORF ENST00000522850.1_1_8:103876781-103877398:+|nuORF ENST00000522850.1_1_8:103876781-103877398:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.256371 1062.49819 -0.0064312 -3.423E-06 -0.10027 -5.3371E-05 -0.1067 -5.6794E-05 532.2561942647217 51.727 0.73165 48.675 48.306 49.038 -3.0517 -0.021193 -4.8485E-05 NaN 14.838 66 20 4 NaN NaN NaN NaN 0 NaN NaN 0 6162000 16434 10864 10741 10744 -0.030560281787074928 GITDWLEK 8 Unmodified _GITDWLEK_ 0 0 0 REV__DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant REV__DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23785400390625 2 481.2531 960.491647 -0.1499 -7.2139E-05 -1.077 -0.00051832 -1.2269 -0.00059046 481.2530802264014 25.602 0.65879 23.748 23.638 24.297 -1.8534 27 18 3 0 0 0 8448 1 4249 4249 6.2058 0 1 696730 + 16435 13716 10742 10745 16533 16533 0.00982078660570096 GIVRKAAY 8 Unmodified _GIVRKAAY_ 0 0 0 REV__ENSG00000136813|ENST00000684092|ECPAS REV__ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 439.77691650390625 2 439.266345 876.518136 -0.13507 -5.9332E-05 0.20906 9.1832E-05 0.073986 3.25E-05 439.266375312226 65.789 5.95 62.742 60.405 66.355 -3.047 518 171 4 0 0 0 8448 1 13325 13325 3.5871 2.7119 1 29963000 + 16436 16349 10743 10746 16534 16534 0.07493812342556794 GIVRKAAY 8 Unmodified _GIVRKAAY_ 0 0 0 REV__ENSG00000136813|ENST00000684092|ECPAS REV__ENSG00000136813|ENST00000684092|ECPAS MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 439.266345 876.518136 -0.14033 -6.1642E-05 0.18967 8.3315E-05 0.049341 2.1674E-05 439.2663733476317 62.594 5.2319 62.594 60.698 65.93 0 0.016358 9.0448E-05 NaN 3.5871 406 150 3 NaN NaN NaN NaN 0 NaN NaN 0 22013000 + 16437 16349 10743 10746 0.07493812342556794 GIVRKAAY 8 Unmodified _GIVRKAAY_ 0 0 0 REV__ENSG00000136813|ENST00000684092|ECPAS REV__ENSG00000136813|ENST00000684092|ECPAS MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 439.266345 876.518136 -0.13507 -5.9332E-05 0.20906 9.1832E-05 0.073986 3.25E-05 439.266375312226 65.789 5.95 62.742 60.405 66.355 -3.047 0.16502 0.00010748 NaN 3.5871 518 171 4 NaN NaN NaN NaN 0 NaN NaN 0 29963000 + 16438 16349 10743 10746 0.07493812342556794 GIVRKAAY 8 Unmodified _GIVRKAAY_ 0 0 0 REV__ENSG00000136813|ENST00000684092|ECPAS REV__ENSG00000136813|ENST00000684092|ECPAS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 439.266345 876.518136 0.15418 6.7727E-05 -0.098721 -4.3365E-05 0.055462 2.4363E-05 439.2662379260589 65.679 6.4529 62.396 60.508 66.961 -3.2832 -0.18138 -0.00016291 NaN 3.5871 513 185 4 NaN NaN NaN NaN 0 NaN NaN 0 27499000 + 16439 16349 10743 10746 0.07493812342556794 GIVRLILYTYD 11 Unmodified _GIVRLILYTYD_ 0 0 0 REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 663.3741455078125 2 663.37682 1324.73909 NaN NaN NaN NaN NaN NaN NaN 52.968 1 52.968 52.468 53.468 0 0 0 0 0.22775 1 10076 10076 10.074 0.6908 1 + 16440 13085 10744 10747 16535 16535 0.08970787808516434 GIWCNQQL 8 Unmodified _GIWCNQQL_ 0 0 0 REV__ENST00000359204.4_1_10:95457906-95462310:-|nuORF REV__ENST00000359204.4_1_10:95457906-95462310:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2333679199219 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 131.65 1 131.65 131.15 132.15 0 0 0 0 0.21181 1 26022 26022 15.768 0 1 + 16441 20848 10745 10748 16536 16536 -0.03307014668519059 GKAAQMAREQN 11 Unmodified _GKAAQMAREQN_ 0 0 0 ENSG00000109944|ENST00000227349|JHY;nc|ENSG00000109944|Q6NUN7-2|JHY ENSG00000109944|ENST00000227349|JHY ENSG00000109944|ENST00000227349|JHY MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2747192382812 2 602.298578 1202.5826 NaN NaN NaN NaN NaN NaN NaN 137.81 1 132.97 132.47 133.47 -4.84 0 0 0 0.23087 1 26552 26552 7.609 0.31972 1 16442 2550 10746 10749 16537 16537 -0.010584006336102902 GKAEHGSVALP 11 Unmodified _GKAEHGSVALP_ 0 0 0 ENSG00000171914|ENST00000636159|TLN2 ENSG00000171914|ENST00000636159|TLN2 ENSG00000171914|ENST00000636159|TLN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.274169921875 2 533.288005 1064.56146 0.010207 5.4431E-06 0.41208 0.00021976 0.42229 0.0002252 533.2881674554787 15.7 0.58491 15.7 15.473 16.058 0 38 16 3 0 0 0 0.44778 1 2386 2386 31.268 3.6395 1 1743900 16443 6185 10747 10750 16538 16538 0.03175957329199264 GKAEHGSVALP 11 Unmodified _GKAEHGSVALP_ 0 0 0 ENSG00000171914|ENST00000636159|TLN2 ENSG00000171914|ENST00000636159|TLN2 ENSG00000171914|ENST00000636159|TLN2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 533.288005 1064.56146 -0.26152 -0.00013946 0.46537 0.00024818 0.20385 0.00010871 533.2883208357297 16.788 0.52465 15.572 15.32 15.845 -1.2159 -0.064015 3.0565E-05 NaN 31.268 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 713970 16444 6185 10747 10750 0.03175957329199264 GKAFLKKSRLI 11 Unmodified _GKAFLKKSRLI_ 0 0 0 nc|ENSG00000176024|Q6PF04-2|ZNF613;ENSG00000176024|ENST00000293471|ZNF613 nc|ENSG00000176024|Q6PF04-2|ZNF613 nc|ENSG00000176024|Q6PF04-2|ZNF613 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7760620117188 2 630.911165 1259.80778 NaN NaN NaN NaN NaN NaN NaN 80.277 1 76.438 75.938 76.938 -3.8392 0 0 0 0.2367 1 15233 15233 2.9952 1.5133 1 16445 6443 10748 10751 16539 16539 0.1882649689889604 GKAFNRRSTL 10 Unmodified _GKAFNRRSTL_ 0 0 0 ENSG00000175322|ENST00000590202|ZNF519 ENSG00000175322|ENST00000590202|ZNF519 ENSG00000175322|ENST00000590202|ZNF519 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.320556640625 2 575.327996 1148.64144 0.35614 0.0002049 0.95024 0.0005467 1.3064 0.0007516 575.3293619837403 126.37 0.20363 121.57 121.5 121.7 -4.7958 8 5 3 0 0 0 0.67319 1 24269 24269 13.906 1.3745 1 1986800 16446 6401 10749 10752 16540 16540 0.07306443723041411 GKAGKVGRPA 10 Unmodified _GKAGKVGRPA_ 0 0 0 REV__ENSG00000142156|ENST00000361866|COL6A1 REV__ENSG00000142156|ENST00000361866|COL6A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1863708496094 3 314.194409 939.561398 NaN NaN NaN NaN NaN NaN NaN 72.797 1 69.259 68.759 69.759 -3.5385 0 0 0 0.22588 1 13804 13804 1.9064 0.25375 1 + 16447 13494 10750 10753 16541 16541 0.08920002119850778 GKAKPKGV 8 Unmodified _GKAKPKGV_ 0 0 0 REV__ENST00000420969.1_1_2:162357550-162357775:-|nuORF REV__ENST00000420969.1_1_2:162357550-162357775:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.8482055664062 1 784.503949 783.496673 0.48128 0.00037757 0.59211 0.00046452 1.0734 0.00084208 784.5043761280858 176.47 0.10257 176.47 176.42 176.52 0 4 2 2 0 0 0 8448 1 36548 36548 0.12286 0 1 426500 + 16448 21506 10751 10754 16542 16542 0.09626427313855856 GKALMCVLRA 10 Unmodified _GKALMCVLRA_ 0 0 0 ENSG00000122033|ENST00000381120|MTIF3 ENSG00000122033|ENST00000381120|MTIF3 ENSG00000122033|ENST00000381120|MTIF3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 531.19482421875 2 531.301547 1060.58854 NaN NaN NaN NaN NaN NaN NaN 165.32 1 160.37 159.87 160.87 -4.9484 0 0 0 0.22588 1 32293 32293 10.074 2.1638 1 16449 3206 10752 10755 16543 16543 0.06067026344362603 GKCFKKFW 8 Unmodified _GKCFKKFW_ 0 0 0 REV__ENSG00000170364|ENST00000358065|SETMAR;REV__ENST00000425046.1_1_3:4345037-4358927:+|nuORF REV__ENSG00000170364|ENST00000358065|SETMAR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.275146484375 2 522.278398 1042.54224 NaN NaN NaN NaN NaN NaN NaN 162.03 1 162.03 161.53 162.53 0 0 0 0 0.21486 1 32552 32552 8.5933 0.68312 1 + 16450 18154;21553 10753 10756 16544 16544 0.022673295045706254 GKCFLLLR 8 Unmodified _GKCFLLLR_ 0 0 0 ENST00000489327.1_1_2:69705990-69736406:-|nuORF ENST00000489327.1_1_2:69705990-69736406:-|nuORF ENST00000489327.1_1_2:69705990-69736406:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1934814453125 3 317.193241 948.557893 NaN NaN NaN NaN NaN NaN NaN 96.083 1 91.892 91.392 92.392 -4.1911 0 0 0 0.21486 1 18343 18343 0.40072 0 1 16451 10496 10754 10757 16545 16545 0.08155616021633705 GKCFLLLR 8 Unmodified _GKCFLLLR_ 0 0 0 ENST00000489327.1_1_2:69705990-69736406:-|nuORF ENST00000489327.1_1_2:69705990-69736406:-|nuORF ENST00000489327.1_1_2:69705990-69736406:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.17498779296875 3 317.193241 948.557893 NaN NaN NaN NaN NaN NaN NaN 96.331 1 92.096 91.596 92.596 -4.2348 0 0 0 0.21486 1 18392 18392 0.40072 0 1 16452 10496 10754 10757 16546 16546 0.08155616021633705 GKCNFFCQGTR 11 Unmodified _GKCNFFCQGTR_ 0 0 0 ELOVL5|p.Y92C|1|0.11|ENSG00000012660|chr6:53276228-53276228|T/C|missense_variant ELOVL5|p.Y92C|1|0.11|ENSG00000012660|chr6:53276228-53276228|T/C|missense_variant ELOVL5|p.Y92C|1|0.11|ENSG00000012660|chr6:53276228-53276228|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7699584960938 2 630.78425 1259.55395 NaN NaN NaN NaN NaN NaN NaN 146.56 1 141.45 140.95 141.95 -5.1108 0 0 0 0.22632 1 28347 28347 0.026206 0.022825 1 16453 938 10755 10758 16547 16547 -0.0654484153442354 GKDEIKKDQVT 11 Unmodified _GKDEIKKDQVT_ 0 0 0 tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1 tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1 tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7587280273438 2 630.843342 1259.67213 NaN NaN NaN NaN NaN NaN NaN 142.92 1 142.92 142.42 143.42 0 0 0 0 0.21121 1 28508 28508 7.0341 1.166 1 16454 26466 10756 10759 16548 16548 0.05268132526748559 GKDFFSRDD 9 Unmodified _GKDFFSRDD_ 0 0 0 ENST00000573578.1_1_16:3335724-3336376:+|nuORF ENST00000573578.1_1_16:3335724-3336376:+|nuORF ENST00000573578.1_1_16:3335724-3336376:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7832641601562 2 543.74617 1085.47779 NaN NaN NaN NaN NaN NaN NaN 119.07 1 119.07 118.57 119.57 0 0 0 0 0.23508 1 23456 23456 10.074 0 1 16455 11438 10757 10760 16549 16549 -0.061531988385240766 GKDVALRY 8 Unmodified _GKDVALRY_ 0 0 0 nc|ENSG00000211707|A0A0A6YYK4|TRBV7-1 nc|ENSG00000211707|A0A0A6YYK4|TRBV7-1 nc|ENSG00000211707|A0A0A6YYK4|TRBV7-1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.248046875 2 461.261259 920.507966 0.016212 7.478E-06 0.42312 0.00019517 0.43933 0.00020265 461.2613325501188 55.288 1.438 52.152 51.463 52.901 -3.1352 67 40 2 0 0 0 8448 1 10084 10084 14.838 0 1 4082600 16456 12575 10758 10761 16550 16550 0.04453204617323081 GKEARARKM 9 Unmodified _GKEARARKM_ 0 0 0 REV__NKX2-2|p.Y181C|1|0.19|ENSG00000125820|chr20:21512203-21512203|T/C|missense_variant REV__NKX2-2|p.Y181C|1|0.19|ENSG00000125820|chr20:21512203-21512203|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6998901367188 2 523.798017 1045.58148 0.32459 0.00017002 -1.9964 -0.0010457 -1.6718 -0.00087569 523.7972258013463 141.43 0.56664 136.57 136.22 136.78 -4.8678 19 15 2 0 0 0 0.73268 1 27234 27234 8.7454 0 1 3436700 + 16457 15833 10759 10762 16551 16551 0.060514297881582024 GKEATPQPK 9 Unmodified _GKEATPQPK_ 0 0 0 ENSG00000185823|ENST00000329468|NPAP1 ENSG00000185823|ENST00000329468|NPAP1 ENSG00000185823|ENST00000329468|NPAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7375183105469 2 478.263999 954.513445 -0.13299 -6.3605E-05 0.84739 0.00040527 0.7144 0.00034167 478.26423323572516 17.942 0.21303 16.631 16.511 16.725 -1.3109 10 5 2 0 0 0 0.60489 1 2911 2911 2.4985 0 1 733660 16458 7014 10760 10763 16552 16552 0.034368834091424105 GKELHGVTKLY 11 Unmodified _GKELHGVTKLY_ 0 0 0 REV__ENST00000557520.1_1_14:88425979-88431954:-|nuORF REV__ENST00000557520.1_1_14:88425979-88431954:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7822875976562 2 622.853512 1243.69247 NaN NaN NaN NaN NaN NaN NaN 112.63 1 108.18 107.68 108.68 -4.4539 0 0 0 0.23379 1 22198 22198 5.2969 1.3525 1 + 16459 14111 10761 10764 16553 16553 0.08037347977233367 GKELLSPGAPL 11 Unmodified _GKELLSPGAPL_ 0 0 0 nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2 nc|ENSG00000155744|Q8IXS8|HYCC2 nc|ENSG00000155744|Q8IXS8|HYCC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2848510742188 2 541.316232 1080.61791 NaN NaN NaN NaN NaN NaN NaN 148.91 1 143.85 143.35 144.35 -5.0595 0 0 0 0.12979 1 28850 28850 31.268 8.6103 1 16460 5057 10762 10765 16554 16554 0.08082585165857381 GKELWSQAF 9 Unmodified _GKELWSQAF_ 0 0 0 REV__ENST00000519579.1_X:52238938-52240854:+|nuORF REV__ENST00000519579.1_X:52238938-52240854:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 356.0862121582031 3 355.850308 1064.5291 0.052672 1.8744E-05 -0.36728 -0.0001307 -0.31461 -0.00011195 355.85013129442507 48.075 0.63148 48.075 47.751 48.382 0 25 17 2 0 0 0 0.8825 1 9092 9092 1.0715 0.83562 1 2022500 + 16461 22620 10763 10766 16555 16555 -0.0005883007381726202 GKEVAYVY 8 Unmodified _GKEVAYVY_ 0 0 0 REV__ENST00000557266.5_1_15:91500194-91504996:+|nuORF REV__ENST00000557266.5_1_15:91500194-91504996:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651306152344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.082 1 74.082 73.582 74.582 0 0 0 0 0.21486 1 14377 14377 5.2969 1.7004 1 + 16462 17894 10764 10767 16556 16556 0.003546936318457483 GKFGLDGHPGP 11 Unmodified _GKFGLDGHPGP_ 0 0 0 REV__nc|ENSG00000169031|Q01955-5|COL4A3 REV__nc|ENSG00000169031|Q01955-5|COL4A3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2738647460938 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 142.32 1 142.32 141.82 142.82 0 0 0 0 0.22632 1 28376 28376 0.03141 0 1 + 16463 18070 10765 10768 16557 16557 -0.001803118423140404 GKFGLDGHPGP 11 Unmodified _GKFGLDGHPGP_ 0 0 0 REV__nc|ENSG00000169031|Q01955-5|COL4A3 REV__nc|ENSG00000169031|Q01955-5|COL4A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2682495117188 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 145.62 1 140.62 140.12 141.12 -5 0 0 0 0.22632 1 28162 28162 0.172 0.044185 1 + 16464 18070 10765 10768 16558 16558 -0.001803118423140404 GKFIAKLRN 9 Unmodified _GKFIAKLRN_ 0 0 0 tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1 tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1 tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.696044921875 2 523.827101 1045.63965 NaN NaN NaN NaN NaN NaN NaN 155.85 1 155.85 155.35 156.35 0 0 0 0 0.19704 1 31250 31250 0.87518 0 1 16465 26426 10766 10769 16559 16559 0.1186543470507786 GKFLSFFGY 9 Unmodified _GKFLSFFGY_ 0 0 0 REV__ENSG00000174567|ENST00000308302|GOLT1A REV__ENSG00000174567|ENST00000308302|GOLT1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2744750976562 2 533.273835 1064.53312 NaN NaN NaN NaN NaN NaN NaN 169.42 1 164.49 163.99 164.99 -4.9295 0 0 0 0.19649 1 33451 33451 0.12781 0 1 + 16466 18420 10767 10770 16560 16560 0.0034325941990118736 GKFRSLLTTE 10 Unmodified _GKFRSLLTTE_ 0 0 0 nc|ENSG00000121964|Q4AE62-6|GTDC1;nc|ENSG00000121964|Q4AE62-2|GTDC1;nc|ENSG00000121964|Q4AE62-5|GTDC1;ENSG00000121964|ENST00000682281|GTDC1;GTDC1|p.H443Q|1|0.47|ENSG00000121964|chr2:143947100-143947100|A/T|missense_variant nc|ENSG00000121964|Q4AE62-6|GTDC1 nc|ENSG00000121964|Q4AE62-6|GTDC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3240356445312 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 147.7 1 142.99 142.49 143.49 -4.7095 0 0 0 2.8426 1 29314 29314 0.063865 0.034582 1 16467 3200 10768 10771 16561 16561 0.06533086051786086 GKFVSLFY 8 Unmodified _GKFVSLFY_ 0 0 0 ENSG00000188558|ENST00000641804|OR2G6;ENSG00000237988|ENST00000641137|OR2I1P;nc|ENSG00000237988|Q8NGU4|OR2I1P;ENSG00000177489|ENST00000320065|OR2G2 ENSG00000188558|ENST00000641804|OR2G6 ENSG00000188558|ENST00000641804|OR2G6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7659606933594 2 480.763104 959.511654 -0.34605 -0.00016637 -0.67195 -0.00032305 -1.018 -0.00048942 480.763022548615 67.149 0.85317 67.149 66.868 67.721 0 51 23 3 0 0 0 0.66265 1 12977 12977 18.135 1.1927 1 5858600 16468 7177 10769 10772 16562 16562 0.030278743911935635 GKGAFKDPQF 10 Unmodified _GKGAFKDPQF_ 0 0 0 nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7864379882812 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 154.92 1 154.92 154.42 155.42 0 0 0 0 0.22588 1 31055 31055 10.074 1.4806 1 16469 12218 10770 10773 16563 16563 0.012608588174998658 GKGCFKRVW 9 Unmodified _GKGCFKRVW_ 0 0 0 REV__nc|ENSG00000023902|Q53GL0-2|PLEKHO1 REV__nc|ENSG00000023902|Q53GL0-2|PLEKHO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2617797851562 2 540.792204 1079.56985 0.25979 0.00014049 -2.1606 -0.0011684 -1.9008 -0.0010279 540.7911888917048 143.3 0.18106 138.64 138.57 138.76 -4.656 5 4 2 0 0 0 0.62102 1 28327 28327 11.64 2.2572 1 3114800 + 16470 13996 10771 10774 16564 16564 0.033252327648142455 GKGCLYIINT 10 Unmodified _GKGCLYIINT_ 0 0 0 REV__CORO1A|p.V282I|1|0.17|ENSG00000102879|chr16:30187812-30187812|G/A|missense_variant REV__CORO1A|p.V282I|1|0.17|ENSG00000102879|chr16:30187812-30187812|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2762451171875 2 541.289159 1080.56377 NaN NaN NaN NaN NaN NaN NaN 157.3 1 152.02 151.52 152.52 -5.2854 0 0 0 0.22588 1 30522 30522 10.074 1.3285 1 + 16471 13565 10772 10775 16565 16565 0.026706697426334358 GKGCSDCRYSK 11 Unmodified _GKGCSDCRYSK_ 0 0 0 REV__nc|ENSG00000131115|Q86WZ6-2|ZNF227 REV__nc|ENSG00000131115|Q86WZ6-2|ZNF227 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2919311523438 2 602.26589 1202.51723 NaN NaN NaN NaN NaN NaN NaN 142.14 1 137.25 136.75 137.75 -4.8982 0 0 0 0.2367 1 27425 27425 2.9952 0 1 + 16472 16054 10773 10776 16566 16566 -0.07593138150991763 GKGDAQEAKAI 11 Unmodified _GKGDAQEAKAI_ 0 0 0 REV__ENSG00000109738|ENST00000264428|GLRB REV__ENSG00000109738|ENST00000264428|GLRB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7700805664062 2 544.290745 1086.56694 0.33618 0.00018298 0.25895 0.00014095 0.59514 0.00032393 544.2908615622932 22.02 0.4547 22.02 21.804 22.258 0 28 12 3 0 0 0 0.96036 1 3759 3759 4.897 0 1 6060200 + 16473 15173 10774 10777 16567 16567 0.027116361209891693 GKGDMWWPRQ 10 Unmodified _GKGDMWWPRQ_ 0 0 0 REV__ENST00000409003.4_2_8:119208954-119209107:-|nuORF REV__ENST00000409003.4_2_8:119208954-119209107:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7525024414062 2 630.800757 1259.58696 NaN NaN NaN NaN NaN NaN NaN 136 1 136 135.5 136.5 0 0 0 0 0.22588 1 26945 26945 9.3831 0.63772 1 + 16474 21402 10775 10778 16568 16568 -0.03244891420058593 GKGELIELMRD 11 Unmodified _GKGELIELMRD_ 0 0 0 REV__EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant REV__EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7791748046875 2 630.834462 1259.65437 1.1018 0.00069507 0.74618 0.00047071 1.848 0.0011658 631.3357389781758 156.96 0.10678 152.17 152.1 152.2 -4.7885 4 2 2 0 0 0 0.76834 1 31215 31215 7.1017 0.37856 1 608460 + 16475 13797 10776 10779 16569 16569 0.03493094000259589 GKGFFGQAIKV 11 Unmodified _GKGFFGQAIKV_ 0 0 0 nc|ENSG00000182541|P53671-3|LIMK2;LIMK2|p.G411Afs*3|1|0.4|ENSG00000182541|chr22:31267874-31267874|G/-|frameshift_variant;nc|ENSG00000182541|P53671-2|LIMK2;ENSG00000182541|ENST00000331728|LIMK2 nc|ENSG00000182541|P53671-3|LIMK2 nc|ENSG00000182541|P53671-3|LIMK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3326416015625 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 148.82 1 144.11 143.61 144.61 -4.7095 0 0 0 0.23018 1 29555 29555 8.1555 1.0538 1 16476 12501 10777 10780 16570 16570 0.08057997639639325 GKGFGNFRY 9 Unmodified _GKGFGNFRY_ 0 0 0 chr7:23418824-23468482|212|12.14|0.19|6.03|-|2|IGF2BP3,IGF2BP3|1 chr7:23418824-23468482|212|12.14|0.19|6.03|-|2|IGF2BP3,IGF2BP3|1 chr7:23418824-23468482|212|12.14|0.19|6.03|-|2|IGF2BP3,IGF2BP3|1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.681884765625 2 523.264333 1044.51411 -0.16953 -8.871E-05 -1.6642 -0.0008708 -1.8337 -0.00095951 523.2637515911591 137.04 0.67331 132.4 131.95 132.62 -4.6413 31 18 3 0 0 0 0.8319 1 27068 27068 4.3292 0.73274 1 3294700 16477 549 10778 10781 16571 16571 -0.006362771511248866 GKGFLDKQGFY 11 Unmodified _GKGFLDKQGFY_ 0 0 0 EPS15L1|p.P231Hfs*37|1|0.27|ENSG00000127527|chr19:16425183-16425183|G/-|frameshift_variant;nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1;ENST00000597559.5_1_19:16547732-16582756:-|nuORF EPS15L1|p.P231Hfs*37|1|0.27|ENSG00000127527|chr19:16425183-16425183|G/-|frameshift_variant EPS15L1|p.P231Hfs*37|1|0.27|ENSG00000127527|chr19:16425183-16425183|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.322265625 2 630.324588 1258.63462 NaN NaN NaN NaN NaN NaN NaN 26.223 1 24.588 24.088 25.088 -1.6347 0 0 0 0.23379 1 4341 4341 5.2969 2.3016 1 16478 3479 10779 10782 16572 16572 0.015650860518235277 GKGFNETLDL 10 Unmodified _GKGFNETLDL_ 0 0 0 ZNF569|p.Q197E|1|0.15|ENSG00000196437|chr19:37414069-37414069|G/C|missense_variant ZNF569|p.Q197E|1|0.15|ENSG00000196437|chr19:37414069-37414069|G/C|missense_variant ZNF569|p.Q197E|1|0.15|ENSG00000196437|chr19:37414069-37414069|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.76708984375 2 547.279846 1092.54514 NaN NaN NaN NaN NaN NaN NaN 163.42 1 163.42 162.92 163.92 0 0 0 0 0.22588 1 32938 32938 10.074 0 1 16479 26629 10780 10783 16573 16573 0.002568313724395921 GKGFTQKSVLS 11 Unmodified _GKGFTQKSVLS_ 0 0 0 ENSG00000197779|ENST00000338637|ZNF81 ENSG00000197779|ENST00000338637|ZNF81 ENSG00000197779|ENST00000338637|ZNF81 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.326904296875 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 144.61 1 144.61 144.11 145.11 0 0 0 0 0.22765 1 28896 28896 10.151 0 1 16480 7400 10781 10784 16574 16574 0.06533086051808823 GKGFTSISRL 10 Unmodified _GKGFTSISRL_ 0 0 0 ENSG00000178338|ENST00000322434|ZNF354B;ENSG00000169131|ENST00000335815|ZNF354A ENSG00000178338|ENST00000322434|ZNF354B ENSG00000178338|ENST00000322434|ZNF354B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2849731445312 2 533.306198 1064.59784 NaN NaN NaN NaN NaN NaN NaN 14.452 1 13.279 12.779 13.779 -1.173 0 0 0 0.22588 1 1955 1955 6.2058 1.8765 1 16481 6575 10782 10785 16575 16575 0.06812834225888764 GKGGAFFNDEY 11 Unmodified _GKGGAFFNDEY_ 0 0 0 REV__tr|U7T618|U7T618_FUSNU1-phosphofructokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00063PE=3SV=1 REV__tr|U7T618|U7T618_FUSNU1-phosphofructokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00063PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.29833984375 2 602.767103 1203.51965 1.0834 0.00065303 1.8128 0.0010927 2.8962 0.0017457 602.7679128502814 145.37 0.20578 140.7 140.58 140.79 -4.6694 7 5 2 0 0 0 0.92792 1 28808 28808 8.7454 2.0222 1 4243400 + 16482 25434 10783 10786 16576 16576 -0.0739664314996844 GKGGDDKDDDE 11 Unmodified _GKGGDDKDDDE_ 0 0 0 nc|ENSG00000152592|Q13316-2|DMP1;ENSG00000152592|ENST00000339673|DMP1 nc|ENSG00000152592|Q13316-2|DMP1 nc|ENSG00000152592|Q13316-2|DMP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3230590820312 2 575.728372 1149.44219 0.057051 3.2846E-05 1.4991 0.00086306 1.5561 0.00089591 576.2300023730667 143.38 0.52155 138.73 138.27 138.79 -4.656 21 14 2 0 0 0 0.95894 1 28317 28317 2.7352 1.0826 1 4768500 16483 4933 10784 10787 16577 16577 -0.12655325876858114 GKGGIWRVIFK 11 Unmodified _GKGGIWRVIFK_ 0 0 0 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7543334960938 2 630.882407 1259.75026 0.69701 0.00043973 -0.84416 -0.00053257 -0.14715 -9.2836E-05 631.3835001538041 161.91 0.10715 156.72 156.65 156.75 -5.1878 4 2 2 0 0 0 0.96036 1 31422 31422 2.4985 0 1 1124900 16484 5680 10785 10788 16578 16578 0.13077654693279328 GKGGKGAG 8 Unmodified _GKGGKGAG_ 0 0 0 ENST00000310512.3_1_7:100027461-100027629:+|nuORF ENST00000310512.3_1_7:100027461-100027629:+|nuORF ENST00000310512.3_1_7:100027461-100027629:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7550048828125 1 631.3522 630.344923 0.60923 0.00038464 -2.0995 -0.0013255 -1.4903 -0.00094091 631.3530736673708 152.2 0.1772 147.02 146.91 147.09 -5.1759 6 4 2 0 0 0 0.97173 1 29488 29488 12.532 3.9383 1 500000 16485 8640 10786 10789 16579 16579 0.01496446286137143 GKGGWGLEPPP 11 Unmodified _GKGGWGLEPPP_ 0 0 0 REV__ENST00000574205.5_1_17:7147249-7147510:-|nuORF REV__ENST00000574205.5_1_17:7147249-7147510:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.78369140625 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 142.99 1 138.09 137.59 138.59 -4.8982 0 0 0 0.20718 1 27596 27596 17.113 2.2746 1 + 16486 23192 10787 10790 16580 16580 0.012608588175226032 GKGIATFLKRI 11 Unmodified _GKGIATFLKRI_ 0 0 0 REV__nc|ENSG00000146039|Q9Y2C5-4|SLC17A4 REV__nc|ENSG00000146039|Q9Y2C5-4|SLC17A4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.292236328125 2 602.38224 1202.74993 NaN NaN NaN NaN NaN NaN NaN 149.39 1 149.39 148.89 149.89 0 0 0 0 0.23429 1 29904 29904 4.897 1.3005 1 + 16487 24086 10788 10791 16581 16581 0.1566623497344608 GKGILSDIKY 10 Unmodified _GKGILSDIKY_ 0 0 0 REV__DYRK1B|p.E112K|1|0.29|ENSG00000105204|chr19:39830413-39830413|C/T|missense_variant REV__DYRK1B|p.E112K|1|0.29|ENSG00000105204|chr19:39830413-39830413|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7742919921875 2 547.316232 1092.61791 0.12327 6.7466E-05 -3.0441 -0.0016661 -2.9208 -0.0015986 547.3131912542825 143.85 0.10612 138.78 138.69 138.8 -5.0671 4 2 2 0 0 0 0.68961 1 27724 27724 12.241 0.60036 1 645360 + 16488 13766 10789 10792 16582 16582 0.0753058516584133 GKGITRNFS 9 Unmodified _GKGITRNFS_ 0 0 0 nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET nc|ENSG00000165731|P07949-2|RET nc|ENSG00000165731|P07949-2|RET MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27069091796875 2 490.269616 978.524678 NaN NaN NaN NaN NaN NaN NaN 138.42 1 138.42 137.92 138.92 0 0 0 0 0.23277 1 27481 27481 13.906 0.39817 1 16489 5657 10790 10793 16583 16583 0.03455705503279205 GKGKGLAGEY 10 Unmodified _GKGKGLAGEY_ 0 0 0 REV__ENSG00000149488|ENST00000358864|TMC2 REV__ENSG00000149488|ENST00000358864|TMC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26580810546875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 164.81 1 159.77 159.27 160.27 -5.0446 0 0 0 0.22588 1 32169 32169 13.042 2.9685 1 + 16490 17008 10791 10794 16584 16584 0.023328834091330464 GKGKMVGFR 9 Unmodified _GKGKMVGFR_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2666931152344 2 490.278929 978.543305 NaN NaN NaN NaN NaN NaN NaN 145.07 1 140.4 139.9 140.9 -4.6694 0 0 0 0.23277 1 28750 28750 13.906 0.39817 1 16491 6829 10792 10795 16585 16585 0.05317543873502473 GKGKTCWSCFQ 11 Unmodified _GKGKTCWSCFQ_ 0 0 0 ENST00000522695.5_1_8:74332630-74332726:-|nuORF ENST00000522695.5_1_8:74332630-74332726:-|nuORF ENST00000522695.5_1_8:74332630-74332726:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.766357421875 2 622.781176 1243.5478 NaN NaN NaN NaN NaN NaN NaN 144.57 1 144.57 144.07 145.07 0 0 0 0 0.23087 1 28886 28886 7.609 0.88579 1 16492 10863 10793 10796 16586 16586 -0.06423359765904024 GKGKTCWSCFQ 11 Unmodified _GKGKTCWSCFQ_ 0 0 0 ENST00000522695.5_1_8:74332630-74332726:-|nuORF ENST00000522695.5_1_8:74332630-74332726:-|nuORF ENST00000522695.5_1_8:74332630-74332726:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7799072265625 2 622.781176 1243.5478 NaN NaN NaN NaN NaN NaN NaN 147.5 1 142.79 142.29 143.29 -4.7095 0 0 0 0.22501 1 29267 29267 12.241 3.4953 1 16493 10863 10793 10796 16587 16587 -0.06423359765904024 GKGKTCWSCFQ 11 Unmodified _GKGKTCWSCFQ_ 0 0 0 ENST00000522695.5_1_8:74332630-74332726:-|nuORF ENST00000522695.5_1_8:74332630-74332726:-|nuORF ENST00000522695.5_1_8:74332630-74332726:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7816772460938 2 622.781176 1243.5478 NaN NaN NaN NaN NaN NaN NaN 146.63 1 141.52 141.02 142.02 -5.1108 0 0 0 0.23018 1 28360 28360 8.1555 3.8263 1 16494 10863 10793 10796 16588 16588 -0.06423359765904024 GKGKTCWSCFQ 11 Unmodified _GKGKTCWSCFQ_ 0 0 0 ENST00000522695.5_1_8:74332630-74332726:-|nuORF ENST00000522695.5_1_8:74332630-74332726:-|nuORF ENST00000522695.5_1_8:74332630-74332726:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.760009765625 2 622.781176 1243.5478 NaN NaN NaN NaN NaN NaN NaN 165.28 1 160.33 159.83 160.83 -4.9484 0 0 0 0.23018 1 32285 32285 8.1555 2.4237 1 16495 10863 10793 10796 16589 16589 -0.06423359765904024 GKGKWKRKSAG 11 Unmodified _GKGKWKRKSAG_ 0 0 0 ENST00000540175.1_1_12:20704556-20705942:+|nuORF;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1 ENST00000540175.1_1_12:20704556-20705942:+|nuORF ENST00000540175.1_1_12:20704556-20705942:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.29638671875 2 601.859464 1201.70437 0.3892 0.00023424 3.4726 0.00209 3.8618 0.0023243 601.8629495448772 132.03 0.10416 132.03 131.96 132.06 0 4 2 2 0 0 0 0.96036 1 26095 26095 4.897 0 1 2186900 16496 8028 10794 10797 16590 16590 0.11159009511061413 GKGLAVLILAI 11 Unmodified _GKGLAVLILAI_ 0 0 0 ENST00000528540.5_1_11:118215138-118220479:+|nuORF;ENST00000532903.1_1_11:118215138-118219992:+|nuORF;CD3G|p.K71Nfs*40|1|0.61|ENSG00000160654|chr11:118349868-118349868|A/-|frameshift_variant;ENSG00000160654|ENST00000532917|CD3G ENST00000528540.5_1_11:118215138-118220479:+|nuORF ENST00000528540.5_1_11:118215138-118220479:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 534.3729248046875 2 534.362985 1066.71142 NaN NaN NaN NaN NaN NaN NaN 165.09 1 165.09 164.59 165.59 0 0 0 0 0.23018 1 33461 33461 8.1555 0.24537 1 16497 447 10795 10798 16591 16591 0.1807292933892768 GKGLDWATPH 10 Unmodified _GKGLDWATPH_ 0 0 0 REV__ENSG00000130234|ENST00000252519|ACE2 REV__ENSG00000130234|ENST00000252519|ACE2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2774047851562 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 145.04 1 139.97 139.47 140.47 -5.0671 0 0 0 0.22588 1 28008 28008 9.3831 1.7742 1 + 16498 15992 10796 10799 16592 16592 -0.001803118423140404 GKGLHAKIR 9 Unmodified _GKGLHAKIR_ 0 0 0 REV__ENSG00000283528|ENST00000636941|TCAF2C REV__ENSG00000283528|ENST00000636941|TCAF2C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27386474609375 2 490.311618 978.608683 NaN NaN NaN NaN NaN NaN NaN 145.47 1 140.4 139.9 140.9 -5.0671 0 0 0 0.23508 1 28110 28110 10.074 2.7847 1 + 16499 18157 10797 10800 16593 16593 0.1185228139083847 GKGLQKTLPSN 11 Unmodified _GKGLQKTLPSN_ 0 0 0 REV__ENSG00000143971|ENST00000272342|ETAA1 REV__ENSG00000143971|ENST00000272342|ETAA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 572.2415771484375 2 571.830037 1141.64552 NaN NaN NaN NaN NaN NaN NaN 172.22 1 167.34 166.84 167.84 -4.881 0 0 0 0.22501 1 34170 34170 12.241 0 1 + 16500 16761 10798 10801 16594 16594 0.08036488426114374 GKGLQRRRRRR 11 Unmodified _GKGLQRRRRRR_ 0 0 0 ENST00000558939.5_1_15:70389784-70389853:-|nuORF ENST00000558939.5_1_15:70389784-70389853:-|nuORF ENST00000558939.5_1_15:70389784-70389853:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 719.9666137695312 2 719.956158 1437.89776 NaN NaN NaN NaN NaN NaN NaN 166.18 1 161.23 160.73 161.73 -4.9484 0 0 0 0.23379 1 32533 32533 5.2969 0 1 16501 11271 10799 10802 16595 16595 0.19632984070653947 GKGNCRECTD 10 Unmodified _GKGNCRECTD_ 0 0 0 REV__nc|ENSG00000103423|Q96EY1-3|DNAJA3 REV__nc|ENSG00000103423|Q96EY1-3|DNAJA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2680053710938 2 541.721315 1081.42808 0.21003 0.00011378 1.0662 0.00057758 1.2762 0.00069136 541.7207560756814 133.77 0.31989 129.13 128.86 129.18 -4.6399 12 8 2 0 0 0 0.91149 1 26335 26335 3.2813 2.823 1 1366500 + 16502 14880 10800 10803 16596 16596 -0.10937973110503663 GKGNIKIEPI 10 Unmodified _GKGNIKIEPI_ 0 0 0 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.55364990234375 3 356.885241 1067.63389 -0.0585 -2.0878E-05 0.14819 5.2886E-05 0.089688 3.2008E-05 356.88527740143587 41.875 0.43115 39.224 39.069 39.5 -2.651 22 11 3 0 0 0 0.70283 1 7533 7533 10.899 2.9536 1 2041000 + 16503 25302 10801 10804 16597 16597 0.10278291402732975 GKGNIKIEPI 10 Unmodified _GKGNIKIEPI_ 0 0 0 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 356.885241 1067.63389 -0.12979 -4.6321E-05 0.3516 0.00012548 0.22181 7.9161E-05 356.885309553173 39.461 0.37409 39.461 39.201 39.575 0 0.15628 -0.00010526 NaN 10.899 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1209300 + 16504 25302 10801 10804 0.10278291402732975 GKGNIKIEPI 10 Unmodified _GKGNIKIEPI_ 0 0 0 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 356.885241 1067.63389 -0.42835 -0.00015287 0.50315 0.00017957 0.074799 2.6695E-05 356.8854044904851 42.005 0.44995 39.286 39.035 39.485 -2.7191 -0.018888 5.6991E-05 NaN 10.899 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2467600 + 16505 25302 10801 10804 0.10278291402732975 GKGNIKIEPI 10 Unmodified _GKGNIKIEPI_ 0 0 0 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 356.885241 1067.63389 -0.0585 -2.0878E-05 0.14819 5.2886E-05 0.089688 3.2008E-05 356.88527740143587 41.875 0.43115 39.224 39.069 39.5 -2.651 -0.080469 -0.00032305 NaN 10.899 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2041000 + 16506 25302 10801 10804 0.10278291402732975 GKGNIKIEPI 10 Unmodified _GKGNIKIEPI_ 0 0 0 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 356.885241 1067.63389 -0.65558 -0.00023397 0.81163 0.00028966 0.15604 5.569E-05 356.8854714963336 41.854 0.49058 39.248 39.013 39.503 -2.606 -0.056922 0.00038727 NaN 10.899 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1561800 + 16507 25302 10801 10804 0.10278291402732975 GKGPPRMWLYG 11 Unmodified _GKGPPRMWLYG_ 0 0 0 REV__VASH1|p.K5Rfs*146|4|0.36|ENSG00000071246|chr14:76762828-76762828|G/-|frameshift_variant REV__VASH1|p.K5Rfs*146|4|0.36|ENSG00000071246|chr14:76762828-76762828|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7777099609375 2 631.32915 1260.64375 0.56749 0.00035827 -1.219 -0.0007696 -0.65153 -0.00041133 631.8318025280391 147.52 0.17459 142.46 142.39 142.56 -5.0595 5 4 2 0 0 0 0.92792 1 28567 28567 13.042 6.8367 1 1989600 + 16508 25531 10802 10805 16598 16598 0.023851561364836016 GKGPSGEADRL 11 Unmodified _GKGPSGEADRL_ 0 0 0 nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1;ENST00000522774.1_1_8:37728794-37730726:-|nuORF;ENST00000523182.5_1_8:37720415-37730726:-|nuORF;ENSG00000156675|ENST00000330843|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7791748046875 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 144.66 1 144.66 144.16 145.16 0 0 0 0 0.22501 1 28905 28905 12.241 0.74595 1 16509 5097 10803 10806 16599 16599 0.0071846546118194965 GKGPSLNQD 9 Unmodified _GKGPSLNQD_ 0 0 0 REV__ENST00000465174.1_1_13:114240152-114286060:+|nuORF REV__ENST00000465174.1_1_13:114240152-114286060:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22857666015625 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 164.5 1 159.71 159.21 160.21 -4.7898 0 0 0 0.19704 1 32879 32879 1.2148 0.53344 1 + 16510 19396 10804 10807 16600 16600 -0.014885665216752386 GKGQRSDERDP 11 Unmodified _GKGQRSDERDP_ 0 0 0 ENST00000298119.8_1_14:42077618-42077753:+|nuORF ENST00000298119.8_1_14:42077618-42077753:+|nuORF ENST00000298119.8_1_14:42077618-42077753:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7733764648438 2 622.80254 1243.59053 NaN NaN NaN NaN NaN NaN NaN 144.77 1 139.7 139.2 140.2 -5.0671 0 0 0 0.22943 1 27941 27941 8.7454 2.0222 1 16511 8523 10805 10808 16601 16601 -0.02152550112487006 GKGRKKKSR 9 Unmodified _GKGRKKKSR_ 0 0 0 REV__nc|ENSG00000166578|Q96DY2-2|IQCD REV__nc|ENSG00000166578|Q96DY2-2|IQCD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2640991210938 2 522.841074 1043.66759 -0.53692 -0.00028072 2.8348 0.0014822 2.2979 0.0012014 523.3427370071295 144.81 0.14014 139.75 139.66 139.8 -5.0671 5 3 2 0 0 0 0.85913 1 27951 27951 10.074 2.1638 1 2349600 + 16512 17859 10806 10809 16602 16602 0.14750757685169447 GKGRKMYKAI 10 Unmodified _GKGRKMYKAI_ 0 0 0 REV__ENSG00000198824|ENST00000361283|CHAMP1 REV__ENSG00000198824|ENST00000361283|CHAMP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3381958007812 2 576.339518 1150.66448 NaN NaN NaN NaN NaN NaN NaN 143.67 1 138.77 138.27 139.27 -4.8982 0 0 0 0.22588 1 27732 27732 10.074 1.4806 1 + 16513 19455 10807 10810 16603 16603 0.0951774651616688 GKGRMREIV 9 Unmodified _GKGRMREIV_ 0 0 0 REV__ENST00000510994.5_1_3:134197018-134197102:-|nuORF REV__ENST00000510994.5_1_3:134197018-134197102:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6958618164062 2 523.300393 1044.58623 -0.18214 -9.5314E-05 -0.91622 -0.00047946 -1.0984 -0.00057477 523.8022319776576 135.51 0.17346 130.87 130.73 130.9 -4.6399 6 4 2 0 0 0 0.85111 1 26714 26714 6.7232 0 1 722570 + 16514 22543 10808 10811 16604 16604 0.06572313930905693 GKGRQIRRRC 10 Unmodified _GKGRQIRRRC_ 0 0 0 SLC12A5|p.E1019Kfs*40|1|0.54|ENSG00000124140|chr20:46056436-46056436|G/-|frameshift_variant SLC12A5|p.E1019Kfs*40|1|0.54|ENSG00000124140|chr20:46056436-46056436|G/-|frameshift_variant SLC12A5|p.E1019Kfs*40|1|0.54|ENSG00000124140|chr20:46056436-46056436|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 615.3449096679688 2 615.359639 1228.70473 NaN NaN NaN NaN NaN NaN NaN 141.94 1 136.95 136.45 137.45 -4.9877 0 0 0 0.22588 1 27342 27342 6.7232 0 1 16515 25668 10809 10812 16605 16605 0.09952105959291657 GKGSFLLAQFA 11 Unmodified _GKGSFLLAQFA_ 0 0 0 REV__ENST00000491771.5_1_2:152135291-152146334:-|nuORF REV__ENST00000491771.5_1_2:152135291-152146334:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 569.3316650390625 2 569.816399 1137.61824 0.28341 0.00016149 1.0291 0.0005864 1.3125 0.00074789 570.3171124527307 148.1 0.30786 148.1 148.05 148.36 0 10 8 2 0 0 0 0.95337 1 29627 29627 2.9952 0 1 1743800 + 16516 22321 10810 10813 16606 16606 0.054940048857361035 GKGSGPAG 8 Unmodified _GKGSGPAG_ 0 0 0 REV__nc|ENSG00000147853|Q9UIJ7-3|AK3 REV__nc|ENSG00000147853|Q9UIJ7-3|AK3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7537231445312 1 630.320565 629.313289 0.4797 0.00030237 1.4124 0.00089027 1.8921 0.0011926 630.3227272671302 137.81 0.17856 132.97 132.81 132.99 -4.84 5 4 2 0 0 0 1.0147 1 26530 26530 9.3474 0 1 1021800 + 16517 16954 10811 10814 16607 16607 -0.016195464678048666 GKGVVGGG 8 Unmodified _GKGVVGGG_ 0 0 0 ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-3|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7664184570312 1 630.356951 629.349674 0.40277 0.00025389 2.0243 0.001276 2.4271 0.0015299 630.3603199610614 135.14 0.098724 135.14 135.05 135.15 0 4 2 2 0 0 0 1.0254 1 26753 26753 5.2307 0 1 1438100 16518 4834 10812 10815 16608 16608 0.0201733042891874 GKGWSKRGPA 10 Unmodified _GKGWSKRGPA_ 0 0 0 REV__EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant REV__EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2640991210938 2 522.290882 1042.56721 NaN NaN NaN NaN NaN NaN NaN 144.81 1 139.74 139.24 140.24 -5.0671 0 0 0 0.22588 1 27951 27951 10.824 0.75 1 + 16519 13778 10813 10816 16609 16609 0.04763100631521411 GKGYYDAYL 9 Unmodified _GKGYYDAYL_ 0 0 0 MTHFS|p.R159C|1|0.41|ENSG00000136371|chr15:79845347-79845347|G/A|missense_variant;nc|ENSG00000136371|P49914-2|MTHFS;ENSG00000136371|ENST00000258874|MTHFS MTHFS|p.R159C|1|0.41|ENSG00000136371|chr15:79845347-79845347|G/A|missense_variant MTHFS|p.R159C|1|0.41|ENSG00000136371|chr15:79845347-79845347|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 524.7455444335938 2 525.250557 1048.48656 0.16686 8.7644E-05 -0.88917 -0.00046704 -0.72231 -0.00037939 525.7516087469404 137.1 0.20291 137.1 137 137.2 0 8 5 2 0 0 0 0.87258 1 27199 27199 4.3292 0 1 2088400 16520 4006 10814 10817 16610 16610 -0.03574225202078196 GKGYYDAYL 9 Unmodified _GKGYYDAYL_ 0 0 0 MTHFS|p.R159C|1|0.41|ENSG00000136371|chr15:79845347-79845347|G/A|missense_variant;nc|ENSG00000136371|P49914-2|MTHFS;ENSG00000136371|ENST00000258874|MTHFS MTHFS|p.R159C|1|0.41|ENSG00000136371|chr15:79845347-79845347|G/A|missense_variant MTHFS|p.R159C|1|0.41|ENSG00000136371|chr15:79845347-79845347|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 525.250557 1048.48656 -0.085549 -4.4935E-05 0.66538 0.00034949 0.57983 0.00030455 525.2505246757215 141.89 0.59499 137.25 136.99 137.58 -4.6493 0.089992 0.00046072 NaN 7.9102 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2436700 16521 4006 10814 10817 -0.03574225202078196 GKGYYDAYL 9 Unmodified _GKGYYDAYL_ 0 0 0 MTHFS|p.R159C|1|0.41|ENSG00000136371|chr15:79845347-79845347|G/A|missense_variant;nc|ENSG00000136371|P49914-2|MTHFS;ENSG00000136371|ENST00000258874|MTHFS MTHFS|p.R159C|1|0.41|ENSG00000136371|chr15:79845347-79845347|G/A|missense_variant MTHFS|p.R159C|1|0.41|ENSG00000136371|chr15:79845347-79845347|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 525.250557 1048.48656 -0.30589 -0.00016067 0.83405 0.00043808 0.52815 0.00027741 525.2509284479088 142.18 0.61188 137.15 136.93 137.55 -5.0261 -0.00040739 0.0006379 NaN 7.9102 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3110600 16522 4006 10814 10817 -0.03574225202078196 GKGYYDAYL 9 Unmodified _GKGYYDAYL_ 0 0 0 MTHFS|p.R159C|1|0.41|ENSG00000136371|chr15:79845347-79845347|G/A|missense_variant;nc|ENSG00000136371|P49914-2|MTHFS;ENSG00000136371|ENST00000258874|MTHFS MTHFS|p.R159C|1|0.41|ENSG00000136371|chr15:79845347-79845347|G/A|missense_variant MTHFS|p.R159C|1|0.41|ENSG00000136371|chr15:79845347-79845347|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 525.250557 1048.48656 0.33022 0.00017345 -0.36895 -0.00019379 -0.038731 -2.0343E-05 525.2507180592402 141.99 0.73364 137.12 136.78 137.52 -4.8678 -0.03519 -0.00062584 NaN 7.9102 30 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1861000 16523 4006 10814 10817 -0.03574225202078196 GKICKKFR 8 Unmodified _GKICKKFR_ 0 0 0 REV__RGS22|p.F421C|1|0.32|ENSG00000132554|chr8:100063506-100063506|A/C|missense_variant REV__RGS22|p.F421C|1|0.32|ENSG00000132554|chr8:100063506-100063506|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26690673828125 2 490.297122 978.579691 NaN NaN NaN NaN NaN NaN NaN 165.25 1 160.3 159.8 160.8 -4.9484 0 0 0 0.21486 1 32276 32276 11.64 3.7301 1 + 16524 24563 10815 10818 16611 16611 0.08954420770191973 GKIERILLRF 10 Unmodified _GKIERILLRF_ 0 0 0 ENST00000265081.6_1_5:79960971-79961052:+|nuORF ENST00000265081.6_1_5:79960971-79961052:+|nuORF ENST00000265081.6_1_5:79960971-79961052:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7740478515625 2 622.895515 1243.77648 NaN NaN NaN NaN NaN NaN NaN 81.116 1 77.559 77.059 78.059 -3.557 0 0 0 0.22588 1 15837 15837 3.9444 0.66309 1 16525 8349 10816 10819 16612 16612 0.16433923864792632 GKIQAQEL 8 Unmodified _GKIQAQEL_ 0 0 0 REV__ENSG00000157637|ENST00000374759|SLC38A10 REV__ENSG00000157637|ENST00000374759|SLC38A10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 443.763671875 2 443.753267 885.491981 -0.087522 -3.8838E-05 -0.22982 -0.00010198 -0.31734 -0.00014082 443.7533414503967 95.071 0.69758 91.021 90.64 91.338 -4.0496 58 19 4 0 0 0 0.83238 1 18604 18604 20.454 0 1 6121500 + 16526 17303 10817 10820 16613 16613 0.04465498380432109 GKIRFAQRAR 10 Unmodified _GKIRFAQRAR_ 0 0 0 REV__nc|ENSG00000075043|O43526-4|KCNQ2 REV__nc|ENSG00000075043|O43526-4|KCNQ2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3006591796875 2 601.86508 1201.71561 NaN NaN NaN NaN NaN NaN NaN 168.89 1 164.02 163.52 164.52 -4.873 0 0 0 0.22588 1 33334 33334 8.7454 0 1 + 16527 14324 10818 10821 16614 16614 0.1228183160521894 GKISLEKK 8 Unmodified _GKISLEKK_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 451.7863464355469 2 451.78711 901.559667 NaN NaN NaN NaN NaN NaN NaN 93.948 1 90.104 89.604 90.604 -3.844 0 0 0 0.23312 1 18018 18018 6.2058 5.579 1 16528 3154 10819 10822 16615 16615 0.10494948311236385 GKKAGPPGPNG 11 Unmodified _GKKAGPPGPNG_ 0 0 0 nc|ENSG00000158813|Q92838-9|EDA;nc|ENSG00000158813|Q92838-3|EDA;ENSG00000158813|ENST00000374552|EDA nc|ENSG00000158813|Q92838-9|EDA nc|ENSG00000158813|Q92838-9|EDA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26873779296875 2 490.269616 978.524678 NaN NaN NaN NaN NaN NaN NaN 163.55 1 158.76 158.26 159.26 -4.7898 0 0 0 0.22501 1 32610 32610 12.241 1.1262 1 16529 5180 10820 10823 16616 16616 0.03455705503267836 GKKFKHVP 8 Unmodified _GKKFKHVP_ 0 0 0 REV__nc|ENSG00000082996|O43567-2|RNF13 REV__nc|ENSG00000082996|O43567-2|RNF13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.15948486328125 3 314.19575 939.565421 NaN NaN NaN NaN NaN NaN NaN 85.224 1 85.224 84.724 85.724 0 0 0 0 0.21486 1 16633 16633 0.40072 0.1317 1 + 16530 14445 10821 10824 16617 16617 0.09322091613557859 GKKFKHVP 8 Unmodified _GKKFKHVP_ 0 0 0 REV__nc|ENSG00000082996|O43567-2|RNF13 REV__nc|ENSG00000082996|O43567-2|RNF13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1596984863281 3 314.19575 939.565421 NaN NaN NaN NaN NaN NaN NaN 95.155 1 95.155 94.655 95.655 0 0 0 0 0.21486 1 18639 18639 0.40072 0.1317 1 + 16531 14445 10821 10824 16618 16618 0.09322091613557859 GKKIKLQIW 9 Unmodified _GKKIKLQIW_ 0 0 0 ENSG00000084733|ENST00000264710|RAB10;ENSG00000166128|ENST00000321437|RAB8B ENSG00000084733|ENST00000264710|RAB10 ENSG00000084733|ENST00000264710|RAB10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 557.3526611328125 2 557.360776 1112.707 NaN NaN NaN NaN NaN NaN NaN 165.78 1 160.99 160.49 161.49 -4.7898 0 0 0 0.19679 1 33237 33237 0.12781 0.06395 1 16532 1671 10822 10825 16619 16619 0.1551546491600675 GKKILKKLWK 10 Unmodified _GKKILKKLWK_ 0 0 0 ENST00000394144.8_2_3:99979878-99998548:+|nuORF ENST00000394144.8_2_3:99979878-99998548:+|nuORF ENST00000394144.8_2_3:99979878-99998548:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 621.5327758789062 2 621.426451 1240.83835 NaN NaN NaN NaN NaN NaN NaN 172.58 1 167.68 167.18 168.18 -4.8977 0 0 0 2.8426 1 34234 34234 0.013265 0 1 16533 9404 10823 10826 16620 16620 0.22756275283927607 GKKKKKGKKSS 11 Unmodified _GKKKKKGKKSS_ 0 0 0 ENST00000349155.6_3_12:115121244-115121814:-|nuORF ENST00000349155.6_3_12:115121244-115121814:-|nuORF ENST00000349155.6_3_12:115121244-115121814:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3005981445312 2 602.398422 1202.78229 NaN NaN NaN NaN NaN NaN NaN 172.61 1 167.82 167.32 168.32 -4.7898 0 0 0 0.23698 1 35171 35171 2.7352 1.0826 1 16534 8920 10824 10827 16621 16621 0.18901022376462606 GKKKKKKKKC 10 Unmodified _GKKKKKKKKC_ 0 0 0 REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.29541015625 2 602.407735 1202.80092 NaN NaN NaN NaN NaN NaN NaN 157.35 1 157.35 156.85 157.85 0 0 0 0 0.22588 1 31578 31578 3.2813 0 1 + 16535 21232 10825 10828 16622 16622 0.20762860746663137 GKKKKKKKKL 10 Unmodified _GKKKKKKKKL_ 0 0 0 REV__nc|ENSG00000174780|O76094-2|SRP72 REV__nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3116760253906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.895 1 27.778 27.278 28.278 -2.1167 0 0 0 0.22588 1 5383 5383 0.13989 0 1 + 16536 18431 10826 10829 16623 16623 0.2778736654954628 GKKKKKKKKL 10 Unmodified _GKKKKKKKKL_ 0 0 0 REV__nc|ENSG00000174780|O76094-2|SRP72 REV__nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.2992858886719 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 34.793 1 32.476 31.976 32.976 -2.3175 0 0 0 0.22588 1 6396 6396 0.13989 0 1 + 16537 18431 10826 10829 16624 16624 0.2778736654954628 GKKKKKKKKL 10 Unmodified _GKKKKKKKKL_ 0 0 0 REV__nc|ENSG00000174780|O76094-2|SRP72 REV__nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 32.064 1 30.038 29.538 30.538 -2.0264 0 0 0 0.22588 1 5552 5552 0.69767 0 1 + 16538 18431 10826 10829 16625 16625 0.2778736654954628 GKKKKKKKKL 10 Unmodified _GKKKKKKKKL_ 0 0 0 REV__nc|ENSG00000174780|O76094-2|SRP72 REV__nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.921 1 28.847 28.347 29.347 -2.0743 0 0 0 0.22588 1 5310 5310 0.13989 0 1 + 16539 18431 10826 10829 16626 16626 0.2778736654954628 GKKKKNLY 8 Unmodified _GKKKKNLY_ 0 0 0 REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1 REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25830078125 2 489.808377 977.6022 NaN NaN NaN NaN NaN NaN NaN 40.145 1 37.655 37.155 38.155 -2.4896 0 0 0 0.23366 1 7177 7177 1.7423 0.52744 1 + 16540 25079 10827 10830 16627 16627 0.1125034343946254 GKKKLIKYII 10 Unmodified _GKKKLIKYII_ 0 0 0 REV__tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1 REV__tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2844848632812 2 602.413009 1202.81146 NaN NaN NaN NaN NaN NaN NaN 169.61 1 164.74 164.24 165.24 -4.873 0 0 0 2.8426 1 33511 33511 0.0013812 0 1 + 16541 24977 10828 10831 16628 16628 0.21817166672758503 GKKKLIKYII 10 Unmodified _GKKKLIKYII_ 0 0 0 REV__tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1 REV__tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2990112304688 2 602.413009 1202.81146 0.44399 0.00026746 3.9489 0.0023789 4.3929 0.0026463 602.9153240155944 151.16 0.20892 145.98 145.86 146.07 -5.1759 11 5 3 0 0 0 0.91149 1 29293 29293 0.40072 0 1 1962700 + 16542 24977 10828 10831 16629 16629 0.21817166672758503 GKKKLKIF 8 Unmodified _GKKKLKIF_ 0 0 0 DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1;DIDO1|p.F711Lfs*22|1|0.35|ENSG00000101191|chr20:62896314-62896314|A/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7770690917969 2 481.331488 960.648422 NaN NaN NaN NaN NaN NaN NaN 147.38 1 142.69 142.19 143.19 -4.6868 0 0 0 0.21486 1 29240 29240 5.2307 2.3415 1 16543 837 10829 10832 16630 16630 0.16652408341553837 GKKKSAKC 8 Unmodified _GKKKSAKC_ 0 0 0 ENST00000435590.1_1_21:46097057-46097849:-|nuORF ENST00000435590.1_1_21:46097057-46097849:-|nuORF ENST00000435590.1_1_21:46097057-46097849:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2508544921875 2 425.25238 848.490207 NaN NaN NaN NaN NaN NaN NaN 122.57 1 118.02 117.52 118.52 -4.5476 0 0 0 0.23487 1 24162 24162 1.7423 1.1154 1 16544 9828 10830 10833 16631 16631 0.05990166090816729 GKKLKEKLK 9 Unmodified _GKKLKEKLK_ 0 0 0 ENSG00000126524|ENST00000246868|SBDS;ENST00000415772.5_1_7:72302228-72304559:+|nuORF;ENST00000490953.5_1_7:66456072-66459281:-|nuORF ENSG00000126524|ENST00000246868|SBDS ENSG00000126524|ENST00000246868|SBDS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 536.7022705078125 2 536.366059 1070.71756 NaN NaN NaN NaN NaN NaN NaN 164.54 1 164.54 164.04 165.04 0 0 0 0 0.19646 1 33284 33284 0.12781 0 1 16545 3435 10831 10834 16632 16632 0.18503447570424214 GKKLKKHKK 9 Unmodified _GKKLKKHKK_ 0 0 0 KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1;KNOP1|p.A158Gfs*16|1|0.3|ENSG00000103550|chr16:19714568-19714569|-/T|frameshift_variant;KNOP1|p.K156Rfs*57|1|0.32|ENSG00000103550|chr16:19714569-19714569|T/-|frameshift_variant;KNOP1|p.K217Nfs*23|2|0.19|ENSG00000103550|chr16:19714384-19714385|TT/-|frameshift_variant KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7769165039062 2 547.879668 1093.74478 0.40886 0.00022401 1.9515 0.0010692 2.3603 0.0012932 548.3805201828989 148.09 0.17239 143.03 142.91 143.08 -5.0595 5 3 2 0 0 0 0.65319 1 28678 28678 0.0033805 0 1 1900400 16546 2199 10832 10835 16633 16633 0.20165975901500133 GKKQVTFTR 9 Unmodified _GKKQVTFTR_ 0 0 0 REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2688598632812 2 532.81419 1063.61383 -0.061944 -3.3005E-05 0.80713 0.00043005 0.74519 0.00039705 533.3165512115951 70.996 0.8617 70.996 70.521 71.382 0 32 24 2 0 0 0 0.5428 1 13667 13667 4.897 1.0207 1 2678100 + 16547 19211 10833 10836 16634 16634 0.08456540462793782 GKKRKQKKK 9 Unmodified _GKKRKQKKK_ 0 0 0 REV__NMT2|p.E57Gfs*15|1|0.27|ENSG00000152465|chr10:15141500-15141501|-/T|frameshift_variant REV__NMT2|p.E57Gfs*15|1|0.27|ENSG00000152465|chr10:15141500-15141501|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 564.9481201171875 2 564.888024 1127.7615 NaN NaN NaN NaN NaN NaN NaN 160.04 1 160.04 159.54 160.54 0 0 0 0 0.19626 1 32136 32136 0.073264 0.073264 1 + 16548 24369 10834 10837 16635 16635 0.20272476787454252 GKKRRKLRRVR 11 Unmodified _GKKRRKLRRVR_ 0 0 0 ERCC5|p.A1179V|1|0.31|ENSG00000134899|chr13:102875878-102875878|C/T|missense_variant ERCC5|p.A1179V|1|0.31|ENSG00000134899|chr13:102875878-102875878|C/T|missense_variant ERCC5|p.A1179V|1|0.31|ENSG00000134899|chr13:102875878-102875878|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 726.9971313476562 2 726.994752 1451.97495 NaN NaN NaN NaN NaN NaN NaN 167.14 1 167.14 166.64 167.64 0 0 0 0 0.23698 1 34137 34137 0.26902 0.26902 1 16549 11782 10835 10838 16636 16636 0.2670420228698731 GKKSKKKSSRA 11 Unmodified _GKKSKKKSSRA_ 0 0 0 CNPY3|p.D276*|1|0.32|ENSG00000137161|chr6:42938772-42938773|-/C|frameshift_variant;ENSG00000137161|ENST00000372836|CNPY3 CNPY3|p.D276*|1|0.32|ENSG00000137161|chr6:42938772-42938773|-/C|frameshift_variant CNPY3|p.D276*|1|0.32|ENSG00000137161|chr6:42938772-42938773|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2976684570312 2 602.877853 1203.74115 0.4477 0.00026991 2.9788 0.0017958 3.4265 0.0020657 603.3806699302173 144.64 0.45117 139.57 139.46 139.91 -5.0671 19 12 2 0 0 0 0.94227 1 27984 27984 2.2828 0 1 22207000 16550 597 10836 10839 16637 16637 0.1474326133698014 GKKTKKNLIKF 11 Unmodified _GKKTKKNLIKF_ 0 0 0 REV__ENST00000550589.1_1_12:82746932-82748399:-|nuORF REV__ENST00000550589.1_1_12:82746932-82748399:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 652.697265625 2 652.924272 1303.83399 NaN NaN NaN NaN NaN NaN NaN 169.7 1 164.77 164.27 165.27 -4.9295 0 0 0 0.22632 1 33520 33520 0.026206 0 1 + 16551 16177 10837 10840 16638 16638 0.19422766070351827 GKKWRKLK 8 Unmodified _GKKWRKLK_ 0 0 0 REV__nc|ENSG00000052749|Q5JTH9-2|RRP12 REV__nc|ENSG00000052749|Q5JTH9-2|RRP12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2728881835938 2 522.345461 1042.67637 NaN NaN NaN NaN NaN NaN NaN 159.35 1 159.35 158.85 159.85 0 0 0 0 0.2396 1 31995 31995 0.0082765 0 1 + 16552 14091 10838 10841 16639 16639 0.15673731321635387 GKLDQIISH 9 Unmodified _GKLDQIISH_ 0 0 0 nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF nc|ENSG00000010327|Q9NY15-2|STAB1 nc|ENSG00000010327|Q9NY15-2|STAB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.7179260253906 3 337.525825 1009.55564 -0.2866 -9.6736E-05 0.40962 0.00013826 0.12302 4.1521E-05 337.52594170373084 45.674 0.62732 42.833 42.475 43.102 -2.8409 26 17 2 0 0 0 0.6226 1 8550 8550 0.96228 0.66664 1 583920 16553 10379 10839 10842 16640 16640 0.051248588175326404 GKLDQIISH 9 Unmodified _GKLDQIISH_ 0 0 0 nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF nc|ENSG00000010327|Q9NY15-2|STAB1 nc|ENSG00000010327|Q9NY15-2|STAB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 337.525825 1009.55564 -0.013466 -4.5452E-06 -0.11967 -4.0392E-05 -0.13314 -4.4937E-05 337.52572615964516 45.782 0.51567 42.917 42.622 43.138 -2.8653 0.041848 -0.00032761 NaN 0.96228 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 862410 16554 10379 10839 10842 0.051248588175326404 GKLIVILLIVV 11 Unmodified _GKLIVILLIVV_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.25830078125 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 73.163 1 69.494 68.994 69.994 -3.6697 0 0 0 0.23698 1 13825 13825 1.3295 0.9789 1 + 16555 17662 10840 10843 16641 16641 0.2543522147529984 GKLIVILLIVV 11 Unmodified _GKLIVILLIVV_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2658081054688 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 177.13 1 172.26 171.76 172.76 -4.8739 0 0 0 0.22632 1 35248 35248 0.094841 0 1 + 16556 17662 10840 10843 16642 16642 0.2543522147529984 GKLIVILLIVV 11 Unmodified _GKLIVILLIVV_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2724609375 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 77.906 1 74.247 73.747 74.747 -3.6588 0 0 0 0.23698 1 14838 14838 1.3295 0.9789 1 + 16557 17662 10840 10843 16643 16643 0.2543522147529984 GKLKKLELLP 10 Unmodified _GKLKKLELLP_ 0 0 0 ENST00000461377.5_1_7:45039147-45115653:+|nuORF ENST00000461377.5_1_7:45039147-45115653:+|nuORF ENST00000461377.5_1_7:45039147-45115653:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 569.9202880859375 2 569.881542 1137.74853 NaN NaN NaN NaN NaN NaN NaN 165.76 1 160.97 160.47 161.47 -4.7898 0 0 0 0.22588 1 33228 33228 6.2058 0.47393 1 16558 10070 10841 10844 16644 16644 0.18516600884709078 GKLLLYEHI 9 Unmodified _GKLLLYEHI_ 0 0 0 REV__ENST00000505081.5_1_5:176938794-176940626:-|nuORF REV__ENST00000505081.5_1_5:176938794-176940626:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7870483398438 2 543.321317 1084.62808 NaN NaN NaN NaN NaN NaN NaN 164.18 1 164.18 163.68 164.68 0 0 0 0 0.22621 1 33169 33169 15.847 1.9411 1 + 16559 18826 10842 10845 16645 16645 0.08915192891072365 GKLMVDLIKY 10 Unmodified _GKLMVDLIKY_ 0 0 0 REV__ENSG00000100147|ENST00000255784|CCDC134 REV__ENSG00000100147|ENST00000255784|CCDC134 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2518920898438 2 590.343935 1178.67332 NaN NaN NaN NaN NaN NaN NaN 72.801 1 69.173 68.673 69.673 -3.6275 0 0 0 0.22588 1 13753 13753 6.7232 0 1 + 16560 14669 10843 10846 16646 16646 0.0911267536196192 GKLRKKKNRSH 11 Unmodified _GKLRKKKNRSH_ 0 0 0 ENST00000603137.1_1_2:28238673-28239105:-|nuORF ENST00000603137.1_1_2:28238673-28239105:-|nuORF ENST00000603137.1_1_2:28238673-28239105:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 676.39990234375 2 676.423294 1350.83203 NaN NaN NaN NaN NaN NaN NaN 165.41 1 160.62 160.12 161.12 -4.7898 0 0 0 0.2367 1 33125 33125 2.9952 0.26005 1 16561 11719 10844 10847 16647 16647 0.17065150105122484 GKLRQPPKVE 10 Unmodified _GKLRQPPKVE_ 0 0 0 ENST00000307365.3_1_10:74034942-74035086:+|nuORF ENST00000307365.3_1_10:74034942-74035086:+|nuORF ENST00000307365.3_1_10:74034942-74035086:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.325927734375 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 126.69 1 126.69 126.19 127.19 0 0 0 0 0.22588 1 25002 25002 7.609 1.4032 1 16562 8613 10845 10848 16648 16648 0.11292785042655851 GKLVPVLLLKL 11 Unmodified _GKLVPVLLLKL_ 0 0 0 ENST00000315872.10_1_2:11320642-11320762:-|nuORF ENST00000315872.10_1_2:11320642-11320762:-|nuORF ENST00000315872.10_1_2:11320642-11320762:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 596.9212646484375 2 596.923209 1191.83187 NaN NaN NaN NaN NaN NaN NaN 167.79 1 167.79 167.29 168.29 0 0 0 0 0.23698 1 34312 34312 1.3295 0.13619 1 16563 8678 10846 10849 16649 16649 0.24362337332559036 GKLWTRWYDQM 11 Unmodified _GKLWTRWYDQM_ 0 0 0 REV__nc|ENSG00000211584|Q6P1K1-2|SLC48A1 REV__nc|ENSG00000211584|Q6P1K1-2|SLC48A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3832397460938 2 742.361179 1482.7078 NaN NaN NaN NaN NaN NaN NaN 135.42 1 130.59 130.09 131.09 -4.8307 0 0 0 0.22632 1 26072 26072 0.026206 0.026206 1 + 16564 19628 10847 10850 16650 16650 -0.01424108497258203 GKNHYTPG 8 Unmodified _GKNHYTPG_ 0 0 0 ENSG00000142611|ENST00000270722|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;nc|ENSG00000142611|Q9HAZ2-4|PRDM16;PRDM16|p.G513Afs*27|1|0.24|ENSG00000142611|chr1:3411729-3411729|C/-|frameshift_variant;PRDM16|p.N553Efs*51|1|0.46|ENSG00000142611|chr1:3411849-3411850|-/G|frameshift_variant;nc|ENSG00000142611|Q9HAZ2-2|PRDM16;PRDM16|p.F457L|1|0.2|ENSG00000142611|chr1:3411568-3411568|T/G|missense_variant ENSG00000142611|ENST00000270722|PRDM16 ENSG00000142611|ENST00000270722|PRDM16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156677246094 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 112.54 1 108.01 107.51 108.51 -4.5259 0 0 0 0.21039 1 21600 21600 16.942 3.4344 1 16565 4431 10848 10851 16651 16651 -0.027245144849416647 GKNHYTPG 8 Unmodified _GKNHYTPG_ 0 0 0 ENSG00000142611|ENST00000270722|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;nc|ENSG00000142611|Q9HAZ2-4|PRDM16;PRDM16|p.G513Afs*27|1|0.24|ENSG00000142611|chr1:3411729-3411729|C/-|frameshift_variant;PRDM16|p.N553Efs*51|1|0.46|ENSG00000142611|chr1:3411849-3411850|-/G|frameshift_variant;nc|ENSG00000142611|Q9HAZ2-2|PRDM16;PRDM16|p.F457L|1|0.2|ENSG00000142611|chr1:3411568-3411568|T/G|missense_variant ENSG00000142611|ENST00000270722|PRDM16 ENSG00000142611|ENST00000270722|PRDM16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2144775390625 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 146.82 1 141.71 141.21 142.21 -5.1108 0 0 0 0.21486 1 28403 28403 11.64 3.047 1 16566 4431 10848 10851 16652 16652 -0.027245144849416647 GKNHYTPG 8 Unmodified _GKNHYTPG_ 0 0 0 ENSG00000142611|ENST00000270722|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;nc|ENSG00000142611|Q9HAZ2-4|PRDM16;PRDM16|p.G513Afs*27|1|0.24|ENSG00000142611|chr1:3411729-3411729|C/-|frameshift_variant;PRDM16|p.N553Efs*51|1|0.46|ENSG00000142611|chr1:3411849-3411850|-/G|frameshift_variant;nc|ENSG00000142611|Q9HAZ2-2|PRDM16;PRDM16|p.F457L|1|0.2|ENSG00000142611|chr1:3411568-3411568|T/G|missense_variant ENSG00000142611|ENST00000270722|PRDM16 ENSG00000142611|ENST00000270722|PRDM16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2151794433594 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 147.29 1 142.29 141.79 142.79 -5 0 0 0 0.21486 1 28510 28510 8.5933 0 1 16567 4431 10848 10851 16653 16653 -0.027245144849416647 GKNIYLTDKE 10 Unmodified _GKNIYLTDKE_ 0 0 0 tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1 tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1 tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.277099609375 2 590.814053 1179.61355 0.34136 0.00020168 4.4769 0.002645 4.8182 0.0028467 591.3160586750839 118.84 0.1046 118.84 118.75 118.85 0 4 2 2 0 0 0 0.871 1 23400 23400 14.838 8.1151 1 623840 16568 26326 10849 10852 16654 16654 0.030930759522561857 GKPDERDI 8 Unmodified _GKPDERDI_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2382507324219 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 136.59 1 136.59 136.09 137.09 0 0 0 0 0.21486 1 27071 27071 5.2307 0 1 16569 12220 10850 10853 16655 16655 -0.005682800046201919 GKPGLLIFLFR 11 Unmodified _GKPGLLIFLFR_ 0 0 0 REV__SLC4A4|p.F457Lfs*9|1|0.4|ENSG00000080493|chr4:71453538-71453538|T/-|frameshift_variant REV__SLC4A4|p.F457Lfs*9|1|0.4|ENSG00000080493|chr4:71453538-71453538|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7555541992188 2 630.894983 1259.77541 0.4008 0.00025287 2.6269 0.0016573 3.0277 0.0019102 631.3992228188318 128.6 0.17215 128.6 128.53 128.7 0 5 4 2 0 0 0 0.80486 1 25385 25385 2.9952 0 1 1028600 + 16570 14408 10851 10854 16656 16656 0.15591709495856776 GKPGLLSL 8 Unmodified _GKPGLLSL_ 0 0 0 REV__ENST00000605589.1_1_1:184355274-184355667:-|nuORF REV__ENST00000605589.1_1_1:184355274-184355667:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4093017578125 1 784.492716 783.485439 0.64401 0.00050522 -0.99248 -0.00077859 -0.34847 -0.00027337 784.4921381107494 150.15 0.5607 145.42 145.12 145.68 -4.7323 23 15 2 0 0 0 0.58432 1 29811 29811 23.148 5.0134 1 3754900 + 16571 23451 10852 10855 16657 16657 0.08503605219709698 GKPITKLA 8 Unmodified _GKPITKLA_ 0 0 0 REV__nc|ENSG00000101773|Q99708-3|RBBP8 REV__nc|ENSG00000101773|Q99708-3|RBBP8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.2694396972656 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 158.6 1 153.8 153.3 154.3 -4.7952 0 0 0 0.21486 1 31540 31540 2.3027 0.24298 1 + 16572 14798 10853 10856 16658 16658 0.10743580628070504 GKPKHRIRRL 10 Unmodified _GKPKHRIRRL_ 0 0 0 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7503662109375 2 630.909822 1259.80509 NaN NaN NaN NaN NaN NaN NaN 141.43 1 141.43 140.93 141.93 0 0 0 0 0.22588 1 28177 28177 3.5965 0.31518 1 16573 26100 10854 10857 16659 16659 0.18558086284610908 GKPKHRRLRG 10 Unmodified _GKPKHRRLRG_ 0 0 0 nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4 nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4 nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2909545898438 2 602.878522 1203.74249 0.39442 0.00023779 1.7303 0.0010432 2.1247 0.001281 602.8801396865626 147.46 0.20462 147.46 147.4 147.61 0 7 5 2 0 0 0 0.91149 1 29486 29486 3.5965 0 1 2969300 16574 7967 10855 10858 16660 16660 0.14876940216367984 GKPKRKRRKKR 11 Unmodified _GKPKRKRRKKR_ 0 0 0 SP140|p.K672Rfs*4|1|0.35|ENSG00000079263|chr2:230294310-230294310|A/-|frameshift_variant;SP140|p.R673Efs*9|1|0.3|ENSG00000079263|chr2:230294309-230294310|-/A|frameshift_variant;nc|ENSG00000079263|Q13342-3|SP140;SP140|p.F779Lfs*17|1|0.23|ENSG00000079263|chr2:230311202-230311202|T/-|frameshift_variant;nc|ENSG00000079263|Q13342-6|SP140;nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140;ENST00000476126.1_1_2:231134613-231152782:+|nuORF SP140|p.K672Rfs*4|1|0.35|ENSG00000079263|chr2:230294310-230294310|A/-|frameshift_variant SP140|p.K672Rfs*4|1|0.35|ENSG00000079263|chr2:230294310-230294310|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 719.517822265625 2 719.489302 1436.96405 NaN NaN NaN NaN NaN NaN NaN 167.29 1 162.4 161.9 162.9 -4.8916 0 0 0 0.23698 1 32883 32883 2.7352 1.5419 1 16575 25769 10856 10859 16661 16661 0.26304799912691124 GKPLFLLWL 9 Unmodified _GKPLFLLWL_ 0 0 0 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7836303710938 2 543.839146 1085.66374 NaN NaN NaN NaN NaN NaN NaN 142.66 1 142.66 142.16 143.16 0 0 0 0 0.23508 1 28447 28447 7.9102 1.187 1 16576 6983 10857 10860 16662 16662 0.12433275138755562 GKPLKKIRIAH 11 Unmodified _GKPLKKIRIAH_ 0 0 0 REV__CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant REV__CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7799072265625 2 630.916781 1259.81901 NaN NaN NaN NaN NaN NaN NaN 132.97 1 132.97 132.47 133.47 0 0 0 0 0.23698 1 26296 26296 2.7352 1.0826 1 + 16577 13589 10858 10861 16663 16663 0.1994931899303083 GKPLKKIRIAH 11 Unmodified _GKPLKKIRIAH_ 0 0 0 REV__CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant REV__CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7520751953125 2 630.916781 1259.81901 0.40273 0.00025409 -3.9298 -0.0024794 -3.5271 -0.0022253 630.917900221463 135 0.13536 135 134.92 135.05 0 4 2 2 0 0 0 0.96102 1 26731 26731 2.9952 0 1 2049600 + 16578 13589 10858 10861 16664 16664 0.1994931899303083 GKPLLYFQSV 10 Unmodified _GKPLLYFQSV_ 0 0 0 REV__ENSG00000111727|ENST00000229330|HCFC2 REV__ENSG00000111727|ENST00000229330|HCFC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.321533203125 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 132.74 1 127.89 127.39 128.39 -4.8527 0 0 0 2.8426 1 25500 25500 0.84494 0 1 + 16579 15260 10859 10862 16665 16665 0.06935175545504535 GKPNEPRLKI 10 Unmodified _GKPNEPRLKI_ 0 0 0 REV__ENSG00000196639|ENST00000431010|HRH1 REV__ENSG00000196639|ENST00000431010|HRH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3222045898438 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 151.65 1 146.48 145.98 146.98 -5.1759 0 0 0 2.8426 1 29392 29392 0.013265 0 1 + 16580 19266 10860 10863 16666 16666 0.11292785042633113 GKPNSAHY 8 Unmodified _GKPNSAHY_ 0 0 0 nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000460211.5_1_2:242607386-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-3|ATG4B;nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF nc|ENSG00000168397|Q9Y4P1-6|ATG4B nc|ENSG00000168397|Q9Y4P1-6|ATG4B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.215576171875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 136.31 1 136.31 135.81 136.81 0 0 0 0 0.21486 1 27010 27010 5.2307 0.47466 1 16581 5904 10861 10864 16667 16667 -0.02724514484964402 GKPNSAHY 8 Unmodified _GKPNSAHY_ 0 0 0 nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000460211.5_1_2:242607386-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-3|ATG4B;nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF nc|ENSG00000168397|Q9Y4P1-6|ATG4B nc|ENSG00000168397|Q9Y4P1-6|ATG4B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2150573730469 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 141.2 1 136.21 135.71 136.71 -4.9877 0 0 0 0.21486 1 27187 27187 7.9102 0 1 16582 5904 10861 10864 16668 16668 -0.02724514484964402 GKPPLKALISQ 11 Unmodified _GKPPLKALISQ_ 0 0 0 REV__nc|ENSG00000143365|P51449-2|RORC REV__nc|ENSG00000143365|P51449-2|RORC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3370971679688 2 576.360973 1150.70739 NaN NaN NaN NaN NaN NaN NaN 145.01 1 140.34 139.84 140.84 -4.6694 0 0 0 0.23379 1 28734 28734 5.2969 0.54088 1 + 16583 16718 10862 10865 16669 16669 0.13806839845233299 GKPPLKALISQ 11 Unmodified _GKPPLKALISQ_ 0 0 0 REV__nc|ENSG00000143365|P51449-2|RORC REV__nc|ENSG00000143365|P51449-2|RORC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.329345703125 2 576.360973 1150.70739 NaN NaN NaN NaN NaN NaN NaN 146.01 1 140.9 140.4 141.4 -5.1108 0 0 0 0.23698 1 28231 28231 2.7352 0 1 + 16584 16718 10862 10865 16670 16670 0.13806839845233299 GKPQPLPGGE 10 Unmodified _GKPQPLPGGE_ 0 0 0 ENST00000315150.9_1_3:128809193-128809469:-|nuORF ENST00000315150.9_1_3:128809193-128809469:-|nuORF ENST00000315150.9_1_3:128809193-128809469:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2657165527344 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 151.91 1 151.91 151.41 152.41 0 0 0 0 0.22588 1 30426 30426 10.074 0.6908 1 16585 8674 10863 10866 16671 16671 0.02332883409144415 GKPRHSLHF 9 Unmodified _GKPRHSLHF_ 0 0 0 ATG4D|p.Y343H|1|0.11|ENSG00000130734|chr19:10551957-10551957|T/C|missense_variant ATG4D|p.Y343H|1|0.11|ENSG00000130734|chr19:10551957-10551957|T/C|missense_variant ATG4D|p.Y343H|1|0.11|ENSG00000130734|chr19:10551957-10551957|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013854980469 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 134.83 1 130.19 129.69 130.69 -4.6399 0 0 0 0.23508 1 26592 26592 2.7352 0 1 16586 253 10864 10867 16672 16672 0.04750806868401014 GKPRIRPRSY 10 Unmodified _GKPRIRPRSY_ 0 0 0 REV__MESP2|p.V240Sfs*241|1|0.27|ENSG00000188095|chr15:89777070-89777070|G/-|frameshift_variant REV__MESP2|p.V240Sfs*241|1|0.27|ENSG00000188095|chr15:89777070-89777070|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.11480712890625 3 410.579034 1228.71527 -0.61154 -0.00025109 1.0524 0.00043211 0.44089 0.00018102 410.9138371850609 15.181 0.20589 13.96 13.826 14.032 -1.2219 6 5 2 0 0 0 0.91149 1 2095 2095 1.7423 0.41263 1 480260 + 16587 23846 10865 10868 16673 16673 0.11006411885364287 GKPRLLRRV 9 Unmodified _GKPRLLRRV_ 0 0 0 REV__ENSG00000278889|ENST00000341959|OR2S2 REV__ENSG00000278889|ENST00000341959|OR2S2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7822875976562 2 547.867092 1093.71963 NaN NaN NaN NaN NaN NaN NaN 141.41 1 141.41 140.91 141.91 0 0 0 0 0.1963 1 28174 28174 0.029283 0.027901 1 + 16588 19950 10866 10869 16674 16674 0.17651921098922685 GKPRPLERL 9 Unmodified _GKPRPLERL_ 0 0 0 REV__ENST00000498749.1_1_2:73114531-73115553:+|nuORF REV__ENST00000498749.1_1_2:73114531-73115553:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27099609375 2 533.330008 1064.64546 NaN NaN NaN NaN NaN NaN NaN 14.255 1 13.082 12.582 13.582 -1.173 0 0 0 0.23508 1 1915 1915 1.8442 0 1 + 16589 15466 10867 10870 16675 16675 0.11572533216735792 GKPRRKNPQ 9 Unmodified _GKPRRKNPQ_ 0 0 0 ENST00000470379.1_1_1:167400920-167408655:-|nuORF;nc|ENSG00000198821|P20963-3|CD247 ENST00000470379.1_1_1:167400920-167408655:-|nuORF ENST00000470379.1_1_1:167400920-167408655:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2623291015625 2 540.822881 1079.63121 0.29192 0.00015788 -3.8363 -0.0020748 -3.5444 -0.0019169 540.8221450714932 135.88 0.24004 135.88 135.78 136.02 0 5 3 2 0 0 0 0.73268 1 26899 26899 18.146 8.0724 1 2647600 16590 10198 10868 10871 16676 16676 0.09457880788454531 GKPTDFEDLE 10 Unmodified _GKPTDFEDLE_ 0 0 0 ENST00000505854.5_1_5:122110798-122139331:+|nuORF;ENSG00000205302|ENST00000379516|SNX2 ENST00000505854.5_1_5:122110798-122139331:+|nuORF ENST00000505854.5_1_5:122110798-122139331:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3120727539062 2 575.766768 1149.51898 0.37111 0.00021367 -3.4617 -0.0019931 -3.0906 -0.0017795 576.2684607489165 151.21 0.1749 146.03 145.93 146.1 -5.1759 5 4 2 0 0 0 0.71097 1 29313 29313 10.074 0.6908 1 1583900 16591 7640 10869 10872 16677 16677 -0.04979482589737927 GKPVAKSEN 9 Unmodified _GKPVAKSEN_ 0 0 0 REV__ENSG00000155761|ENST00000336338|SPAG17 REV__ENSG00000155761|ENST00000336338|SPAG17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2563781738281 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 144.32 1 139.65 139.15 140.15 -4.6694 0 0 0 0.23508 1 28573 28573 7.2892 0 1 + 16592 17225 10870 10873 16678 16678 0.030685968920806772 GKPVKAGLQL 10 Unmodified _GKPVKAGLQL_ 0 0 0 REV__nc|ENSG00000197912|Q9UQ90-2|SPG7 REV__nc|ENSG00000197912|Q9UQ90-2|SPG7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 506.18890380859375 2 505.821484 1009.62842 0.21804 0.00011029 -2.1663 -0.0010958 -1.9483 -0.00098549 506.3210735332434 145.69 0.48288 140.69 140.39 140.88 -5 22 13 2 0 0 0 0.88533 1 28169 28169 13.042 8.7132 1 5165200 + 16593 19372 10871 10874 16679 16679 0.12398612610945747 GKPVLREADP 10 Unmodified _GKPVLREADP_ 0 0 0 ENST00000485301.1_1_9:131477094-131479133:+|nuORF ENST00000485301.1_1_9:131477094-131479133:+|nuORF ENST00000485301.1_1_9:131477094-131479133:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.265380859375 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 155.59 1 150.34 149.84 150.84 -5.2526 0 0 0 0.22588 1 30173 30173 12.241 2.8575 1 16594 10441 10872 10875 16680 16680 0.05568530363257196 GKPVQILRLQ 10 Unmodified _GKPVQILRLQ_ 0 0 0 REV__ENST00000537918.1_1_11:64084335-64084637:-|nuORF REV__ENST00000537918.1_1_11:64084335-64084637:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3353881835938 2 576.36659 1150.71863 NaN NaN NaN NaN NaN NaN NaN 141.36 1 141.36 140.86 141.86 0 0 0 0 0.22588 1 28160 28160 9.3831 5.4387 1 + 16595 22832 10873 10876 16681 16681 0.14929661939368088 GKPVQILRLQ 10 Unmodified _GKPVQILRLQ_ 0 0 0 REV__ENST00000537918.1_1_11:64084335-64084637:-|nuORF REV__ENST00000537918.1_1_11:64084335-64084637:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.313232421875 2 576.36659 1150.71863 0.091285 5.2614E-05 -3.0204 -0.0017409 -2.9292 -0.0016883 576.3663485170262 145.97 0.17557 141.28 141.15 141.33 -4.6868 5 4 2 0 0 0 0.71097 3 28942 28924;28933;28942 10.074 3.8681 1 1368800 + 16596 22832 10873 10876 16682;16683;16684 16684 0.14929661939368088 GKPVRPKLTV 10 Unmodified _GKPVRPKLTV_ 0 0 0 nc|ENSG00000103888|Q8WUJ3-2|CEMIP;ENSG00000103888|ENST00000394685|CEMIP nc|ENSG00000103888|Q8WUJ3-2|CEMIP nc|ENSG00000103888|Q8WUJ3-2|CEMIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7840576171875 2 547.855858 1093.69716 0.27449 0.00015038 2.8003 0.0015342 3.0748 0.0016846 548.3580633306392 147.18 0.21623 142.5 142.33 142.54 -4.6868 6 5 2 0 0 0 0.87854 1 29199 29199 5.7319 4.25 1 7389700 16597 2209 10874 10877 16685 16685 0.15406276910630368 GKPVVNVSY 9 Unmodified _GKPVVNVSY_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5;ENST00000468749.1_1_10:112262519-112263241:+|nuORF ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7685852050781 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 141.5 1 136.51 136.01 137.01 -4.9877 0 0 0 0.21065 1 27251 27251 20.454 5.8719 1 16598 4159 10875 10878 16686 16686 0.040980714145121055 GKQAIMNCIEP 11 Unmodified _GKQAIMNCIEP_ 0 0 0 REV__nc|ENSG00000099954|Q9BXF3|CECR2 REV__nc|ENSG00000099954|Q9BXF3|CECR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.297119140625 2 602.296659 1202.57876 NaN NaN NaN NaN NaN NaN NaN 172.02 1 167.12 166.62 167.62 -4.8977 0 0 0 0.23018 1 34101 34101 8.1555 0.8663 1 + 16599 14650 10876 10879 16687 16687 -0.014422064517020772 GKQSGLFGF 9 Unmodified _GKQSGLFGF_ 0 0 0 REV__ENST00000567876.1_1_15:74282649-74284576:-|nuORF REV__ENST00000567876.1_1_15:74282649-74284576:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.16790771484375 3 314.167749 939.481417 NaN NaN NaN NaN NaN NaN NaN 109.4 1 105.22 104.72 105.72 -4.1826 0 0 0 0.23508 1 21054 21054 2.7352 0.64919 1 + 16600 14211 10877 10880 16688 16688 0.009255157259985936 GKRAILAAVRP 11 Unmodified _GKRAILAAVRP_ 0 0 0 REV__nc|ENSG00000089847|Q8TF21-2|ANKRD24 REV__nc|ENSG00000089847|Q8TF21-2|ANKRD24 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3274536132812 2 576.372207 1150.72986 NaN NaN NaN NaN NaN NaN NaN 162.9 1 158.11 157.61 158.61 -4.7898 0 0 0 0.23324 1 32432 32432 5.7319 0 1 + 16601 14537 10878 10881 16689 16689 0.16052484033502878 GKRCAVALWF 10 Unmodified _GKRCAVALWF_ 0 0 0 ENST00000463171.5_1_3:189681716-189688667:-|nuORF;nc|ENSG00000090530|Q8IVL5-2|P3H2;ENSG00000090530|ENST00000319332|P3H2 ENST00000463171.5_1_3:189681716-189688667:-|nuORF ENST00000463171.5_1_3:189681716-189688667:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3369750976562 2 575.813136 1149.61172 0.26758 0.00015407 0.23383 0.00013464 0.5014 0.00028871 575.813443604262 157.87 0.17609 152.59 152.5 152.68 -5.2854 6 4 2 0 0 0 0.70357 1 30639 30639 10.824 2.2306 1 760110 16602 1787 10879 10882 16690 16690 0.04289788453320398 GKRFGRNPSII 11 Unmodified _GKRFGRNPSII_ 0 0 0 ENST00000438243.2_3_1:151297244-151299801:-|nuORF ENST00000438243.2_3_1:151297244-151299801:-|nuORF ENST00000438243.2_3_1:151297244-151299801:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.763427734375 2 622.864746 1243.71494 NaN NaN NaN NaN NaN NaN NaN 73.303 1 69.627 69.127 70.127 -3.6764 0 0 0 0.23379 1 13852 13852 5.2969 0 1 16603 9860 10880 10883 16691 16691 0.10282992165502947 GKRHKTAL 8 Unmodified _GKRHKTAL_ 0 0 0 REV__ENST00000522468.1_1_8:28921445-28921885:+|nuORF REV__ENST00000522468.1_1_8:28921445-28921885:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.19012451171875 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 69.139 1 69.139 68.639 69.639 0 0 0 0 0.21486 1 13380 13380 1.6526 0 1 + 16604 22660 10881 10884 16692 16692 0.09244019465393194 GKRHKTAL 8 Unmodified _GKRHKTAL_ 0 0 0 REV__ENST00000522468.1_1_8:28921445-28921885:+|nuORF REV__ENST00000522468.1_1_8:28921445-28921885:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.20172119140625 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 98.162 1 98.162 97.662 98.662 0 0 0 0 0.21486 1 19239 19239 0.40072 0.050084 1 + 16605 22660 10881 10884 16693 16693 0.09244019465393194 GKRHKTAL 8 Unmodified _GKRHKTAL_ 0 0 0 REV__ENST00000522468.1_1_8:28921445-28921885:+|nuORF REV__ENST00000522468.1_1_8:28921445-28921885:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.04034423828125 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 82.009 1 78.452 77.952 78.952 -3.557 0 0 0 0.21486 1 16026 16026 1.6526 0 1 + 16606 22660 10881 10884 16694 16694 0.09244019465393194 GKRHKTAL 8 Unmodified _GKRHKTAL_ 0 0 0 REV__ENST00000522468.1_1_8:28921445-28921885:+|nuORF REV__ENST00000522468.1_1_8:28921445-28921885:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.2117919921875 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 108.72 1 104.35 103.85 104.85 -4.3691 0 0 0 0.21486 1 21424 21424 1.6526 0.17072 1 + 16607 22660 10881 10884 16695 16695 0.09244019465393194 GKRHKTAL 8 Unmodified _GKRHKTAL_ 0 0 0 REV__ENST00000522468.1_1_8:28921445-28921885:+|nuORF REV__ENST00000522468.1_1_8:28921445-28921885:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.1753845214844 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 114.69 1 110.22 109.72 110.72 -4.4726 0 0 0 0.21486 1 22601 22601 1.6526 0.17072 1 + 16608 22660 10881 10884 16696 16696 0.09244019465393194 GKRHKTAL 8 Unmodified _GKRHKTAL_ 0 0 0 REV__ENST00000522468.1_1_8:28921445-28921885:+|nuORF REV__ENST00000522468.1_1_8:28921445-28921885:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.20611572265625 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 177.22 1 172.43 171.93 172.93 -4.7898 0 0 0 0.21486 1 36246 36246 1.6526 0 1 + 16609 22660 10881 10884 16697 16697 0.09244019465393194 GKRHPRSARS 10 Unmodified _GKRHPRSARS_ 0 0 0 REV__ENST00000382038.6_1_5:34914962-34915626:-|nuORF REV__ENST00000382038.6_1_5:34914962-34915626:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3333129882812 2 576.328862 1150.64317 NaN NaN NaN NaN NaN NaN NaN 147.99 1 142.94 142.44 143.44 -5.0595 0 0 0 2.8426 1 28661 28661 0.26539 0.058062 1 + 16610 21175 10882 10885 16698 16698 0.07387497531658482 GKRIAEYSY 9 Unmodified _GKRIAEYSY_ 0 0 0 ENSG00000165194|ENST00000373034|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7830200195312 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 150.84 1 150.84 150.34 151.34 0 0 0 0 0.23508 1 30203 30203 11.64 3.047 1 16611 5606 10883 10886 16699 16699 0.01120554954900399 GKRIRPLALR 10 Unmodified _GKRIRPLALR_ 0 0 0 REV__ENSG00000116032|ENST00000234389|GRIN3B REV__ENSG00000116032|ENST00000234389|GRIN3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.26025390625 2 590.393474 1178.77239 NaN NaN NaN NaN NaN NaN NaN 116.37 1 111.88 111.38 112.38 -4.486 0 0 0 2.8426 1 22946 22946 0 0 1 + 16612 15463 10884 10887 16700 16700 0.19015879161702287 GKRKKIMRY 9 Unmodified _GKRKKIMRY_ 0 0 0 REV__THAP9|p.F341Lfs*2|1|0.33|ENSG00000168152|chr4:82917229-82917229|T/-|frameshift_variant REV__THAP9|p.F341Lfs*2|1|0.33|ENSG00000168152|chr4:82917229-82917229|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.275390625 2 590.360785 1178.70702 NaN NaN NaN NaN NaN NaN NaN 115.13 1 115.13 114.63 115.63 0 0 0 0 0.23508 1 22654 22654 4.3292 0 1 + 16613 18002 10885 10888 16701 16701 0.12481141644389027 GKRKKIMRY 9 Unmodified _GKRKKIMRY_ 0 0 0 REV__THAP9|p.F341Lfs*2|1|0.33|ENSG00000168152|chr4:82917229-82917229|T/-|frameshift_variant REV__THAP9|p.F341Lfs*2|1|0.33|ENSG00000168152|chr4:82917229-82917229|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2724609375 2 590.360785 1178.70702 0.49787 0.00029392 -2.5855 -0.0015264 -2.0876 -0.0012324 590.860894838968 141.16 0.21149 136.17 136.06 136.27 -4.9877 6 5 2 0 0 0 0.84208 1 27178 27178 7.2892 5.6366 1 3230500 + 16614 18002 10885 10888 16702 16702 0.12481141644389027 GKRKRSQYQ 9 Unmodified _GKRKRSQYQ_ 0 0 0 nc|ENSG00000131196|O95644-17|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;NFATC1|p.R690H|1|0.15|ENSG00000131196|chr18:79467559-79467559|G/A|missense_variant;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1 nc|ENSG00000131196|O95644-17|NFATC1 nc|ENSG00000131196|O95644-17|NFATC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3353881835938 2 575.825621 1149.63669 -0.081686 -4.7037E-05 -2.9751 -0.0017132 -3.0568 -0.0017602 575.8261811947118 74.424 0.17648 71.06 70.951 71.127 -3.3643 5 4 2 0 0 0 0.64382 1 14511 14511 10.074 0.6908 1 399750 16615 3663 10886 10889 16703 16703 0.06785559580271183 GKRLKIETHY 10 Unmodified _GKRLKIETHY_ 0 0 0 DNAH5|p.R4071H|1|0.35|ENSG00000039139|chr5:13721067-13721067|C/T|missense_variant DNAH5|p.R4071H|1|0.35|ENSG00000039139|chr5:13721067-13721067|C/T|missense_variant DNAH5|p.R4071H|1|0.35|ENSG00000039139|chr5:13721067-13721067|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7711791992188 2 622.859129 1243.70371 NaN NaN NaN NaN NaN NaN NaN 60.298 1 56.985 56.485 57.485 -3.3139 0 0 0 0.22588 1 11227 11227 3.9444 0.3479 1 16616 865 10887 10890 16704 16704 0.09160170071368157 GKRLLLLWQL 10 Unmodified _GKRLLLLWQL_ 0 0 0 ENST00000578651.5_1_18:683014-712587:-|nuORF ENST00000578651.5_1_18:683014-712587:-|nuORF ENST00000578651.5_1_18:683014-712587:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 620.6383666992188 2 620.400433 1238.78631 NaN NaN NaN NaN NaN NaN NaN 166.5 1 166.5 166 167 0 0 0 0 0.22588 1 33927 33927 3.5965 0.31518 1 16617 11475 10888 10891 16705 16705 0.17647111870178378 GKRLVLLTT 9 Unmodified _GKRLVLLTT_ 0 0 0 ENST00000392754.7_2_10:126431146-126431500:-|nuORF ENST00000392754.7_2_10:126431146-126431500:-|nuORF ENST00000392754.7_2_10:126431146-126431500:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.2218017578125 3 334.221965 999.644065 NaN NaN NaN NaN NaN NaN NaN 84.176 1 80.512 80.012 81.012 -3.6641 0 0 0 0.23508 1 16456 16456 1.0715 0 1 16618 9383 10889 10892 16706 16706 0.14422899127964683 GKRNRHRFRQK 11 Unmodified _GKRNRHRFRQK_ 0 0 0 REV__ENSG00000109072|ENST00000226218|VTN REV__ENSG00000109072|ENST00000226218|VTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3784790039062 2 741.934891 1481.85523 NaN NaN NaN NaN NaN NaN NaN 156.24 1 151.46 150.96 151.96 -4.7885 0 0 0 0.23698 1 31068 31068 2.7352 0.45242 1 + 16619 15149 10890 10893 16707 16707 0.13357588942426446 GKRVEAQEK 9 Unmodified _GKRVEAQEK_ 0 0 0 ENST00000478402.5_1_1:226111340-226111810:-|nuORF ENST00000478402.5_1_1:226111340-226111810:-|nuORF ENST00000478402.5_1_1:226111340-226111810:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.272705078125 2 522.793455 1043.57236 0.06602 3.4515E-05 0.30353 0.00015869 0.36955 0.0001932 522.793457164741 13.428 0.17299 13.428 13.342 13.515 0 6 4 2 0 0 0 0.87511 1 1922 1922 3.9444 0 1 344960 16620 10318 10891 10894 16708 16708 0.05231359703475391 GKSGFVASGHP 11 Unmodified _GKSGFVASGHP_ 0 0 0 REV__ENST00000450917.1_1_2:3523256-3523661:+|nuORF REV__ENST00000450917.1_1_2:3523256-3523661:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2675170898438 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 20.196 1 18.871 18.371 19.371 -1.3251 0 0 0 0.22595 1 3121 3121 11.495 1.4208 1 + 16621 21801 10892 10895 16709 16709 3.401640651645721E-05 GKSKTIVGLLY 11 Unmodified _GKSKTIVGLLY_ 0 0 0 SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.I2020Nfs*4|1|0.32|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2490234375 2 589.860806 1177.70706 NaN NaN NaN NaN NaN NaN NaN 95.011 1 91.13 90.63 91.63 -3.881 0 0 0 0.23634 1 18230 18230 3.2813 0.97858 1 16622 2419 10893 10896 16710 16710 0.12531420125401382 GKSLLFMKLD 10 Unmodified _GKSLLFMKLD_ 0 0 0 REV__MTERF1|p.N329Ifs*9|1|0.03|ENSG00000127989|chr7:91873808-91873809|-/GGAGTAAAAAAAGA|frameshift_variant REV__MTERF1|p.N329Ifs*9|1|0.03|ENSG00000127989|chr7:91873808-91873809|-/GGAGTAAAAAAAGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3323364257812 2 576.328285 1150.64202 NaN NaN NaN NaN NaN NaN NaN 120.56 1 116.09 115.59 116.59 -4.467 0 0 0 0.22588 1 23214 23214 11.495 2.1116 1 + 16623 15909 10894 10897 16711 16711 0.07272102327874563 GKSNMSNYCEQ 11 Unmodified _GKSNMSNYCEQ_ 0 0 0 REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7658081054688 2 630.752812 1259.49107 NaN NaN NaN NaN NaN NaN NaN 167.77 1 162.98 162.48 163.48 -4.7898 0 0 0 0.22632 1 33874 33874 0.0059557 0 1 + 16624 22928 10895 10898 16712 16712 -0.1282945211310107 GKTFRVRS 8 Unmodified _GKTFRVRS_ 0 0 0 nc|ENSG00000171817|Q8NDQ6-2|ZNF540;nc|ENSG00000171817|Q8NDQ6-4|ZNF540;ENST00000589285.1_1_19:38102250-38104161:+|nuORF;ENSG00000171817|ENST00000316433|ZNF540;ZKSCAN5|p.A613T|1|0.07|ENSG00000196652|chr7:99531566-99531566|G/A|missense_variant nc|ENSG00000171817|Q8NDQ6-2|ZNF540 nc|ENSG00000171817|Q8NDQ6-2|ZNF540 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 475.77947998046875 2 475.780151 949.545748 0.307 0.00014606 -1.9333 -0.00091984 -1.6263 -0.00077377 475.78003443562903 35.89 0.34999 33.613 33.49 33.84 -2.2766 13 9 2 0 0 0 8448 1 6333 6333 6.2058 3.5745 1 1206900 16625 6177 10896 10899 16713 16713 0.06895715602809105 GKTFRVRS 8 Unmodified _GKTFRVRS_ 0 0 0 nc|ENSG00000171817|Q8NDQ6-2|ZNF540;nc|ENSG00000171817|Q8NDQ6-4|ZNF540;ENST00000589285.1_1_19:38102250-38104161:+|nuORF;ENSG00000171817|ENST00000316433|ZNF540;ZKSCAN5|p.A613T|1|0.07|ENSG00000196652|chr7:99531566-99531566|G/A|missense_variant nc|ENSG00000171817|Q8NDQ6-2|ZNF540 nc|ENSG00000171817|Q8NDQ6-2|ZNF540 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 475.780151 949.545748 -0.43687 -0.00020785 -1.2811 -0.00060951 -1.7179 -0.00081737 475.78062563577697 36.076 0.42329 33.682 33.593 34.016 -2.3938 0.034529 0.00014709 NaN 6.2058 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1481600 16626 6177 10896 10899 0.06895715602809105 GKTKEVYKL 9 Unmodified _GKTKEVYKL_ 0 0 0 PAICS|p.E23K|1|0.08|ENSG00000128050|chr4:56441713-56441713|G/A|missense_variant PAICS|p.E23K|1|0.08|ENSG00000128050|chr4:56441713-56441713|G/A|missense_variant PAICS|p.E23K|1|0.08|ENSG00000128050|chr4:56441713-56441713|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2846069335938 2 533.318774 1064.623 NaN NaN NaN NaN NaN NaN NaN 159.31 1 154.51 154.01 155.01 -4.7952 0 0 0 0.21844 1 31672 31672 18.146 0 1 16627 12749 10897 10900 16714 16714 0.09326889028466212 GKTSLLRTLY 10 Unmodified _GKTSLLRTLY_ 0 0 0 REV__PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant REV__PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3213500976562 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 156.65 1 151.38 150.88 151.88 -5.2712 0 0 0 0.22588 1 30383 30383 6.2058 0.97511 1 + 16628 13834 10898 10901 16715 16715 0.10169962948543798 GKVCLRSLLY 10 Unmodified _GKVCLRSLLY_ 0 0 0 ENST00000462924.5_1_10:99206088-99212597:+|nuORF;nc|ENSG00000171307|Q969W1-4|ZDHHC16;nc|ENSG00000171307|Q969W1-3|ZDHHC16;nc|ENSG00000171307|Q969W1-2|ZDHHC16;ENSG00000171307|ENST00000393760|ZDHHC16 ENST00000462924.5_1_10:99206088-99212597:+|nuORF ENST00000462924.5_1_10:99206088-99212597:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3111572265625 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 138.94 1 133.99 133.49 134.49 -4.952 0 0 0 0.22588 1 26723 26723 8.7454 1.4562 1 16629 6136 10899 10902 16716 16716 0.08394924422009353 GKVFKKLIL 9 Unmodified _GKVFKKLIL_ 0 0 0 nc|ENSG00000068366|O60488|ACSL4;ENSG00000068366|ENST00000672401|ACSL4 nc|ENSG00000068366|O60488|ACSL4 nc|ENSG00000068366|O60488|ACSL4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6783447265625 2 523.360245 1044.70594 -0.17269 -9.0382E-05 1.781 0.00093208 1.6083 0.0008417 523.8624240989931 136.08 0.14189 131.44 131.32 131.47 -4.6399 5 3 2 0 0 0 0.88278 1 26833 26833 0.52476 0 1 2046600 16630 12232 10900 10903 16717 16717 0.18537250547137774 GKVFRRNC 8 Unmodified _GKVFRRNC_ 0 0 0 ENSG00000164920|ENST00000297565|OSR2;nc|ENSG00000164920|Q8N2R0-3|OSR2;OSR2|p.R300Q|1|0.17|ENSG00000164920|chr8:98951661-98951661|G/A|missense_variant ENSG00000164920|ENST00000297565|OSR2 ENSG00000164920|ENST00000297565|OSR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2657165527344 2 490.266353 978.518153 NaN NaN NaN NaN NaN NaN NaN 89.543 1 85.765 85.265 86.265 -3.7779 0 0 0 0.22934 1 17141 17141 0.063987 0 1 16631 5575 10901 10904 16718 16718 0.028034890709136562 GKVFSHKLY 9 Unmodified _GKVFSHKLY_ 0 0 0 ZNF880|p.K537Nfs*60|4|0.25|ENSG00000221923|chr19:52385185-52385185|A/-|frameshift_variant;ENSG00000221923|ENST00000422689|ZNF880 ZNF880|p.K537Nfs*60|4|0.25|ENSG00000221923|chr19:52385185-52385185|A/-|frameshift_variant ZNF880|p.K537Nfs*60|4|0.25|ENSG00000221923|chr19:52385185-52385185|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2076110839844 3 360.206315 1077.59712 NaN NaN NaN NaN NaN NaN NaN 73.692 1 70.016 69.516 70.516 -3.6764 0 0 0 0.19638 1 13930 13930 0.073264 0 1 16632 7766 10902 10905 16719 16719 0.06142039576843672 GKVLIIVVVL 10 Unmodified _GKVLIIVVVL_ 0 0 0 FNDC5|p.E154K|1|0.06|ENSG00000160097|chr1:32867792-32867792|C/T|missense_variant FNDC5|p.E154K|1|0.06|ENSG00000160097|chr1:32867792-32867792|C/T|missense_variant FNDC5|p.E154K|1|0.06|ENSG00000160097|chr1:32867792-32867792|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 526.836669921875 2 526.875728 1051.7369 NaN NaN NaN NaN NaN NaN NaN 174.47 1 169.58 169.08 170.08 -4.8845 0 0 0 0.22588 1 34663 34663 1.6526 0 1 16633 11822 10903 10906 16720 16720 0.21310403861366467 GKVNKIFKRL 10 Unmodified _GKVNKIFKRL_ 0 0 0 REV__ENST00000533318.5_1_11:130776613-130786189:-|nuORF REV__ENST00000533318.5_1_11:130776613-130786189:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2897338867188 2 601.890232 1201.76591 1.0089 0.00060726 3.4207 0.0020589 4.4296 0.0026661 602.3946783832056 133.54 0.16866 128.9 128.79 128.96 -4.6399 5 4 2 0 0 0 0.91149 1 26307 26307 0.35063 0 1 668050 + 16634 15622 10904 10907 16721 16721 0.17309941210351099 GKWTICPGL 9 Unmodified _GKWTICPGL_ 0 0 0 ENST00000552000.2_1_17:46681925-46682093:-|nuORF ENST00000552000.2_1_17:46681925-46682093:-|nuORF ENST00000552000.2_1_17:46681925-46682093:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26531982421875 2 487.760038 973.505523 0.33795 0.00016484 2.3724 0.0011572 2.7104 0.001322 487.76202154045313 40.55 3.361 40.55 40.208 43.569 0 290 95 6 0 0 0 0.38188 1 7629 7629 26.884 5.3467 1 3347699999.9999995 16635 11189 10905 10908 16722 16722 0.017710328880070847 GKWTICPGL 9 Unmodified _GKWTICPGL_ 0 0 0 ENST00000552000.2_1_17:46681925-46682093:-|nuORF ENST00000552000.2_1_17:46681925-46682093:-|nuORF ENST00000552000.2_1_17:46681925-46682093:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2656555175781 2 487.760038 973.505523 0.094453 4.6071E-05 2.6805 0.0013074 2.7749 0.0013535 487.7623264963329 43.172 4.6741 40.414 40.021 44.695 -2.7581 407 133 6 0 0 0 0.40602 1 7816 7816 25.399 1.3787 1 4172199999.9999995 16636 11189 10905 10908 16723 16723 0.017710328880070847 GKYEEVEYY 9 Unmodified _GKYEEVEYY_ 0 0 0 nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;KLC1|p.N469Tfs*18|1|0.15|ENSG00000126214|chr14:103677436-103677436|A/-|frameshift_variant;nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-6|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2583618164062 2 590.263862 1178.51317 NaN NaN NaN NaN NaN NaN NaN 122.28 1 122.28 121.78 122.78 0 0 0 0 0.23508 1 24104 24104 8.5933 0.68312 1 16637 3417 10906 10909 16724 16724 -0.06894581101369113 GKYIKQCLNI 10 Unmodified _GKYIKQCLNI_ 0 0 0 REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2760620117188 2 590.331359 1178.64816 NaN NaN NaN NaN NaN NaN NaN 72.719 1 69.092 68.592 69.592 -3.6275 0 0 0 0.22588 1 13735 13735 6.7232 0 1 + 16638 19302 10907 10910 16725 16725 0.06598620559384472 GKYMVKLHLNG 11 Unmodified _GKYMVKLHLNG_ 0 0 0 ENSG00000131375|ENST00000253693|CAPN7 ENSG00000131375|ENST00000253693|CAPN7 ENSG00000131375|ENST00000253693|CAPN7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.751708984375 2 630.350083 1258.68561 0.31568 0.00019899 -0.88606 -0.00055853 -0.57039 -0.00035954 630.3502017733632 140.15 0.099976 135.2 135.15 135.25 -4.952 4 2 2 0 0 0 0.93546 1 26961 26961 8.1555 0 1 3331600 16639 3671 10908 10911 16726 16726 0.06661711825017846 GKYQVLTKEN 10 Unmodified _GKYQVLTKEN_ 0 0 0 REV__tr|U7STX6|U7STX6_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1 REV__tr|U7STX6|U7STX6_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2642822265625 2 590.322045 1178.62954 NaN NaN NaN NaN NaN NaN NaN 162.44 1 157.65 157.15 158.15 -4.7898 0 0 0 2.8426 1 32325 32325 0.26539 0 1 + 16640 25127 10909 10912 16727 16727 0.04736782189183941 GKYYHQKY 8 Unmodified _GKYYHQKY_ 0 0 0 ENSG00000127951|ENST00000248598|FGL2 ENSG00000127951|ENST00000248598|FGL2 ENSG00000127951|ENST00000248598|FGL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7870483398438 2 543.771991 1085.52943 0.33604 0.00018273 0.96915 0.000527 1.3052 0.00070973 544.272394622456 138.29 0.16913 138.29 138.21 138.38 0 6 4 2 0 0 0 0.89147 1 27470 27470 0.62683 0 1 1855500 16641 3497 10910 10913 16728 16728 -0.009914103539585994 GLAAGTVASII 11 Unmodified _GLAAGTVASII_ 0 0 0 ENSG00000110448|ENST00000347785|CD5 ENSG00000110448|ENST00000347785|CD5 ENSG00000110448|ENST00000347785|CD5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 486.7799377441406 2 486.78985 971.565146 NaN NaN NaN NaN NaN NaN NaN 94.534 1 90.343 89.843 90.843 -4.1911 0 0 0 0.22632 1 18034 18034 8.4443 0 1 16642 2578 10911 10914 16729 16729 0.07822627103041668 GLAAPAHLIGF 11 Unmodified _GLAAPAHLIGF_ 0 0 0 ENST00000452143.5_1_1:62902154-62905498:+|nuORF ENST00000452143.5_1_1:62902154-62905498:+|nuORF ENST00000452143.5_1_1:62902154-62905498:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2844848632812 2 533.805834 1065.59712 0.071124 3.7966E-05 3.9697 0.002119 4.0408 0.002157 533.8094671235206 132.61 0.13971 127.97 127.88 128.02 -4.6399 5 3 2 0 0 0 0.89989 1 26129 26129 10.824 1.4765 1 1030700 16643 9988 10912 10915 16730 16730 0.06694039576859723 GLAAPAHLIGF 11 Unmodified _GLAAPAHLIGF_ 0 0 0 ENST00000452143.5_1_1:62902154-62905498:+|nuORF ENST00000452143.5_1_1:62902154-62905498:+|nuORF ENST00000452143.5_1_1:62902154-62905498:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 533.805834 1065.59712 0.2541 0.00013564 -1.5138 -0.00080807 -1.2597 -0.00067243 534.3048510749916 133 0.14014 128.2 128.08 128.22 -4.799 0.11285 -0.00315 NaN 10.824 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 811800 16644 9988 10912 10915 0.06694039576859723 GLAARKWGP 9 Unmodified _GLAARKWGP_ 0 0 0 REV__ENST00000465807.1_1_10:102826065-102827451:+|nuORF REV__ENST00000465807.1_1_10:102826065-102827451:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7304382324219 2 478.277244 954.539935 0.41999 0.00020087 -1.077 -0.00051512 -0.65705 -0.00031425 478.27646479825364 123.86 1.0594 119.13 118.57 119.63 -4.731 72 29 4 0 0 0 0.5464 1 23713 23713 1.2148 0 1 9631300 + 16645 21958 10913 10916 16731 16731 0.060846170911418085 GLACGRNLKL 10 Unmodified _GLACGRNLKL_ 0 0 0 nc|ENSG00000166130|Q70UQ0-3|IKBIP nc|ENSG00000166130|Q70UQ0-3|IKBIP nc|ENSG00000166130|Q70UQ0-3|IKBIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2628173828125 2 522.802768 1043.59098 0.038251 1.9997E-05 0.1966 0.00010279 0.23486 0.00012278 522.802743795339 95.617 0.34349 91.736 91.613 91.956 -3.881 14 9 2 0 0 0 1.1181 1 18382 18382 0.20733 0.13406 1 1615400 16646 12436 10914 10917 16732 16732 0.07093198073675921 GLACVVATGP 10 Unmodified _GLACVVATGP_ 0 0 0 REV__ENST00000265351.11_1_6:43543606-43543798:-|nuORF REV__ENST00000265351.11_1_6:43543606-43543798:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 444.23626708984375 2 444.236396 886.458238 NaN NaN NaN NaN NaN NaN NaN 68.22 1 65.112 64.612 65.612 -3.1086 0 0 0 0.22588 1 13246 13246 11.64 3.7301 1 + 16647 20243 10915 10918 16733 16733 0.010467536170040148 GLADFFFRA 9 Unmodified _GLADFFFRA_ 0 0 0 REV__TIGD2|p.K107R|1|0.22|ENSG00000180346|chr4:89113294-89113294|A/G|missense_variant REV__TIGD2|p.K107R|1|0.22|ENSG00000180346|chr4:89113294-89113294|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2796630859375 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 91.496 1 91.496 90.996 91.996 0 0 0 0 0.23508 1 17881 17881 12.532 0 1 + 16648 24802 10916 10919 16734 16734 0.004054911343700951 GLADPSALTQA 11 Unmodified _GLADPSALTQA_ 0 0 0 nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27197265625 2 522.272021 1042.52949 0.0050251 2.6244E-06 0.094949 4.9589E-05 0.099974 5.2214E-05 522.272026434454 91.9 0.69513 91.9 91.496 92.191 0 44 19 3 0 0 0 3.3814E-05 6 17988 17903;17939;17988;17992;17996;18016 107.1 65.594 1 5852700 16649 3319 10917 10920 16735;16736;16737;16738;16739;16740 16737 0.009925448553985916 GLADPSALTQA 11 Unmodified _GLADPSALTQA_ 0 0 0 nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2721557617188 2 522.272021 1042.52949 -0.17174 -8.9695E-05 0.36446 0.00019035 0.19272 0.00010065 522.2722095558729 95.903 0.68037 91.854 91.444 92.124 -4.0496 42 19 3 0 0 0 0.010812 4 18807 18768;18807;18809;18852 86.332 47.339 1 7379600 16650 3319 10917 10920 16741;16742;16743;16744 16742 0.009925448553985916 GLADPSALTQA 11 Unmodified _GLADPSALTQA_ 0 0 0 nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2719116210938 2 522.272021 1042.52949 -0.58405 -0.00030503 0.64562 0.00033719 0.061577 3.216E-05 522.2723323688182 96.132 0.80373 91.897 91.5 92.303 -4.2348 55 22 3 0 0 0 0.013014 6 18362 18313;18316;18328;18362;18366;18409 86.332 46.548 1 6191500 16651 3319 10917 10920 16745;16746;16747;16748;16749;16750 16748 0.009925448553985916 GLADPSALTQA 11 Unmodified _GLADPSALTQA_ 0 0 0 nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2721557617188 2 522.272021 1042.52949 0.032361 1.6901E-05 0.13314 6.9533E-05 0.1655 8.6434E-05 522.2720850836279 95.814 0.71539 91.933 91.545 92.261 -3.881 51 20 3 0 0 0 0.066241 3 18380 18380;18424;18427 83.429 35.68 1 6887800 16652 3319 10917 10920 16751;16752;16753 16751 0.009925448553985916 GLAEAVLEA 9 Unmodified _GLAEAVLEA_ 0 0 0 nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.216552734375 2 436.739825 871.465098 0.050068 2.1866E-05 -0.088808 -3.8786E-05 -0.038741 -1.692E-05 436.7397440220995 88.656 0.8804 88.656 88.223 89.103 0 61 24 3 0 0 0 0.095051 1 17295 17295 57.471 2.6978 1 9895400 16653 8059 10918 10921 16754 16754 0.024223897692422725 GLAEAVLEA 9 Unmodified _GLAEAVLEA_ 0 0 0 nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21630859375 2 436.739825 871.465098 -0.15566 -6.7984E-05 0.21924 9.5752E-05 0.06358 2.7768E-05 436.7398543572351 92.3 1.008 88.374 87.991 88.999 -3.9251 67 28 3 0 0 0 0.11447 1 18112 18112 50.855 2.5092 1 11530000 16654 8059 10918 10921 16755 16755 0.024223897692422725 GLAEAVLEA 9 Unmodified _GLAEAVLEA_ 0 0 0 nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21612548828125 2 436.739825 871.465098 0.22246 9.7159E-05 -0.12124 -5.2948E-05 0.10123 4.421E-05 436.739705704216 92.612 0.97697 88.468 88.106 89.083 -4.1435 61 27 3 0 0 0 0.060164 1 17652 17652 67.344 3.781 1 10757000 16655 8059 10918 10921 16756 16756 0.024223897692422725 GLAEDSPKM 9 Oxidation (M) _GLAEDSPKM(Oxidation (M))_ GLAEDSPKM(1) GLAEDSPKM(48) 0 0 1 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7817687988281 2 482.226225 962.437897 -0.17821 -8.5936E-05 0.44468 0.00021444 0.26647 0.0001285 482.22644572502196 20.822 0.5564 19.437 19.236 19.793 -1.3847 19 15 2 0 0 0 0.12505 1 3241 3241 47.749 17.524 1 472260 16656 6312 10919 10922 16757 16757 92 -0.04482461833435991 GLAEDSPKM 9 Oxidation (M) _GLAEDSPKM(Oxidation (M))_ 0 0 1 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 482.226225 962.437897 0.4242 0.00020456 0.125 6.0281E-05 0.5492 0.00026484 482.22623838166123 20.923 0.35554 19.449 19.276 19.632 -1.4742 -0.0069642 -0.00024504 NaN 47.749 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 540750 16657 6312 10919 10922 92 -0.04482461833435991 GLAEDSPKM 9 Oxidation (M) _GLAEDSPKM(Oxidation (M))_ 0 0 1 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.226225 962.437897 -0.85375 -0.0004117 1.4189 0.00068425 0.5652 0.00027255 482.2270201971794 21.141 0.5528 19.42 19.149 19.702 -1.7211 -0.036222 0.0010029 NaN 47.749 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 363190 16658 6312 10919 10922 92 -0.04482461833435991 GLAEEPLPP 9 Unmodified _GLAEEPLPP_ 0 0 0 REV__ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant REV__ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5293884277344 2 461.74765 921.480748 NaN NaN NaN NaN NaN NaN NaN 81.137 1 77.58 77.08 78.08 -3.557 0 0 0 0.21848 1 15842 15842 18.135 0 1 + 16659 13113 10920 10923 16758 16758 0.01686676286283273 GLAEMHSMS 9 Unmodified _GLAEMHSMS_ 0 0 0 REV__CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant;REV__CAMSAP3|p.V883Gfs*10|1|0.45|ENSG00000076826|chr19:7613137-7613138|-/G|frameshift_variant REV__CAMSAP3|p.V883Gfs*10|1|0.45|ENSG00000076826|chr19:7613137-7613138|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2536926269531 2 481.707145 961.399737 NaN NaN NaN NaN NaN NaN NaN 130.61 1 125.98 125.48 126.48 -4.6359 0 0 0 0.23508 1 25737 25737 12.532 1.7076 1 + 16660 13247;13248 10921 10924 16759 16759 -0.08250671019766287 GLAEPEFATM 10 Unmodified _GLAEPEFATM_ 0 0 0 REV__ENST00000351010.6_1_5:149602275-149624861:-|nuORF REV__ENST00000351010.6_1_5:149602275-149624861:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2859497070312 2 533.2497 1064.48485 NaN NaN NaN NaN NaN NaN NaN 144.67 1 139.73 139.23 140.23 -4.9445 0 0 0 0.22588 1 27951 27951 6.2058 0.44535 1 + 16661 14267 10922 10925 16760 16760 -0.04481602282339736 GLAERISVL 9 Unmodified _GLAERISVL_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7311706542969 2 479.290017 956.565481 0.38105 0.00018263 -0.09784 -4.6894E-05 0.28321 0.00013574 479.289937321613 124.76 0.88197 120 119.45 120.34 -4.7681 50 24 3 0 0 0 0.38759 1 23957 23957 30.703 30.703 1 3663500 16662 2294 10923 10926 16761 16761 0.0854604682289164 GLAERISVL 9 Unmodified _GLAERISVL_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74456787109375 2 479.290017 956.565481 0.22304 0.0001069 0.029921 1.4341E-05 0.25296 0.00012124 479.2900196313596 124.63 0.86206 119.98 119.53 120.39 -4.6495 53 23 3 0 0 0 0.23009 1 23930 23930 55.503 7.7541 1 2937400 16663 2294 10923 10926 16762 16762 0.0854604682289164 GLAERPRRA 9 Unmodified _GLAERPRRA_ 0 0 0 PAPPA|p.L1144Dfs*7|1|0.39|ENSG00000182752|chr9:116334893-116334894|CT/-|frameshift_variant;PAPPA|p.L1488Qfs*6|1|0.82|ENSG00000182752|chr9:116362706-116362707|CT/-|frameshift_variant;ENSG00000182752|ENST00000328252|PAPPA;PAPPA|p.T1006Nfs*4|1|0.27|ENSG00000182752|chr9:116302813-116302814|-/A|frameshift_variant PAPPA|p.L1144Dfs*7|1|0.39|ENSG00000182752|chr9:116334893-116334894|CT/-|frameshift_variant PAPPA|p.L1144Dfs*7|1|0.39|ENSG00000182752|chr9:116334893-116334894|CT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 513.263671875 2 513.301781 1024.58901 -0.16685 -8.5645E-05 -2.014 -0.0010338 -2.1809 -0.0011194 513.2989356727328 68.786 0.17995 65.25 65.111 65.291 -3.5362 6 4 2 0 0 0 0.26282 1 12934 12934 0.37959 0 1 919560 16664 6809 10924 10927 16763 16763 0.07769905380087039 GLAESRWP 8 Unmodified _GLAESRWP_ 0 0 0 ENST00000552943.5_1_16:704926-706047:+|nuORF ENST00000552943.5_1_16:704926-706047:+|nuORF ENST00000552943.5_1_16:704926-706047:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384948730469 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 104.18 1 100.12 99.622 100.62 -4.0543 0 0 0 0.21181 1 20032 20032 15.768 1.1865 1 16665 11202 10925 10928 16764 16764 0.00036345066178000707 GLAGETHMN 9 Unmodified _GLAGETHMN_ 0 0 0 REV__ENST00000508181.5_1_5:94842662-94852339:-|nuORF REV__ENST00000508181.5_1_5:94842662-94852339:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2503967285156 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 79.269 1 79.269 78.769 79.769 0 0 0 0 0.23508 1 15424 15424 8.5933 0 1 + 16666 19433 10926 10929 16765 16765 -0.05980195427844137 GLAISLSVVG 10 Unmodified _GLAISLSVVG_ 0 0 0 ENST00000532072.1_1_1:44441705-44442052:+|nuORF;ENST00000472277.5_1_1:44440756-44442727:+|nuORF;ENST00000496131.1_1_1:44440655-44442052:+|nuORF;nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B ENST00000532072.1_1_1:44441705-44442052:+|nuORF ENST00000532072.1_1_1:44441705-44442052:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2339782714844 2 458.279118 914.543683 -0.39958 -0.00018312 0.92201 0.00042254 0.52243 0.00023942 458.279469412385 105.74 0.70164 101.47 101.13 101.83 -4.2638 45 19 3 0 0 0 1.0275 1 20813 20813 1.0651 0 1 9348300 16667 2984 10927 10930 16766 16766 0.08299242074349422 GLAKAELFL 9 Unmodified _GLAKAELFL_ 0 0 0 ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1 ENSG00000167600|ENST00000310054|CYP2S1 ENSG00000167600|ENST00000310054|CYP2S1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7663269042969 2 481.289485 960.564418 NaN NaN NaN NaN NaN NaN NaN 105.51 1 101.25 100.75 101.75 -4.2638 0 0 0 0.23508 1 20766 20766 9.3474 0 1 16668 5820 10928 10931 16767 16767 0.08255832453971834 GLAKYRDSR 9 Unmodified _GLAKYRDSR_ 0 0 0 tr|U7SRX6|U7SRX6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01463PE=4SV=1 tr|U7SRX6|U7SRX6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01463PE=4SV=1 tr|U7SRX6|U7SRX6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01463PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2836303710938 2 533.293622 1064.57269 NaN NaN NaN NaN NaN NaN NaN 130.72 1 125.88 125.38 126.38 -4.8355 0 0 0 0.22621 1 25096 25096 15.847 2.8047 1 16669 26086 10929 10932 16768 16768 0.042987794233113164 GLALDNLKL 9 Unmodified _GLALDNLKL_ 0 0 0 REV__tr|U7SVQ4|U7SVQ4_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01304PE=3SV=1 REV__tr|U7SVQ4|U7SVQ4_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01304PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.740234375 2 478.792392 955.570232 -0.12251 -5.8659E-05 0.43299 0.00020731 0.31048 0.00014865 478.79242575461865 103.7 0.64354 99.482 99.181 99.825 -4.2183 40 18 3 0 0 0 0.58804 1 20328 20328 13.906 1.6654 1 2467200 + 16670 25194 10930 10933 16769 16769 0.0906693096563913 GLALKVQEV 9 Unmodified _GLALKVQEV_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74224853515625 2 478.792392 955.570232 0.23473 0.00011238 -0.037181 -1.7802E-05 0.19754 9.4583E-05 478.7923085065747 99.974 0.58397 99.974 99.69 100.27 0 27 16 2 0 0 0 0.02633 2 19618 19564;19618 85.642 33.373 1 2416000 16671 3691 10931 10934 16770;16771 16771 0.09066930965661868 GLALKVQEV 9 Unmodified _GLALKVQEV_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7323913574219 2 478.792392 955.570232 -0.12251 -5.8659E-05 0.43299 0.00020731 0.31048 0.00014865 478.79242575461865 103.7 0.64354 99.482 99.181 99.825 -4.2183 40 18 3 0 0 0 0.46882 1 20343 20343 21.537 3.3906 1 2467200 16672 3691 10931 10934 16772 16772 0.09066930965661868 GLALKVQEV 9 Unmodified _GLALKVQEV_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72589111328125 2 478.792392 955.570232 0.19895 9.5255E-05 0.059441 2.846E-05 0.25839 0.00012371 478.7923394629676 103.9 0.62074 99.558 99.283 99.903 -4.346 38 17 3 0 0 0 0.13932 1 19857 19857 45.7 12.914 1 3740100 16673 3691 10931 10934 16773 16773 0.09066930965661868 GLALKVQEV 9 Unmodified _GLALKVQEV_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7414855957031 2 478.792392 955.570232 0.64146 0.00030713 -0.69283 -0.00033172 -0.05137 -2.4596E-05 478.7920676706205 103.7 0.77258 99.642 99.21 99.983 -4.0543 44 21 3 0 0 0 0.061087 1 19974 19974 71.922 19.654 1 2670600 16674 3691 10931 10934 16774 16774 0.09066930965661868 GLANVDVP 8 Unmodified _GLANVDVP_ 0 0 0 REV__nc|ENSG00000137948|Q58F21-5|BRDT REV__nc|ENSG00000137948|Q58F21-5|BRDT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3824462890625 1 784.419945 783.412668 0.24384 0.00019127 0.5207 0.00040845 0.76454 0.00059972 784.4201866639962 81.142 0.88017 77.303 76.905 77.785 -3.8392 38 24 2 0 0 0 0.58432 1 15383 15383 23.148 3.7094 1 2036600 + 16675 16424 10932 10935 16775 16775 0.012298514262738536 GLANVDVP 8 Unmodified _GLANVDVP_ 0 0 0 REV__nc|ENSG00000137948|Q58F21-5|BRDT REV__nc|ENSG00000137948|Q58F21-5|BRDT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 784.419945 783.412668 0.55598 0.00043612 0.55106 0.00043226 1.107 0.00086838 784.4204135529139 80.855 0.90617 77.298 76.851 77.757 -3.557 0.0030642 -9.156E-05 NaN 23.148 40 25 2 NaN NaN NaN NaN 0 NaN NaN 0 2501500 + 16676 16424 10932 10935 0.012298514262738536 GLANVDVP 8 Unmodified _GLANVDVP_ 0 0 0 REV__nc|ENSG00000137948|Q58F21-5|BRDT REV__nc|ENSG00000137948|Q58F21-5|BRDT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 784.419945 783.412668 0.24384 0.00019127 0.5207 0.00040845 0.76454 0.00059972 784.4201866639962 81.142 0.88017 77.303 76.905 77.785 -3.8392 0.0083816 -0.00011537 NaN 23.148 38 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2036600 + 16677 16424 10932 10935 0.012298514262738536 GLANVDVP 8 Unmodified _GLANVDVP_ 0 0 0 REV__nc|ENSG00000137948|Q58F21-5|BRDT REV__nc|ENSG00000137948|Q58F21-5|BRDT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 784.419945 783.412668 -0.015547 -1.2195E-05 0.82823 0.00064968 0.81268 0.00063748 784.4203845065884 80.971 1.0082 77.283 76.86 77.868 -3.6879 -0.011446 0.00012586 NaN 23.148 42 28 2 NaN NaN NaN NaN 0 NaN NaN 0 2423800 + 16678 16424 10932 10935 0.012298514262738536 GLAPLEVRV 9 Unmodified _GLAPLEVRV_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant nc|ENSG00000136068|O75369-5|FLNB nc|ENSG00000136068|O75369-5|FLNB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 476.7745056152344 2 477.292559 952.570566 -0.013007 -6.208E-06 -0.16623 -7.9339E-05 -0.17923 -8.5547E-05 477.2924360213232 133.38 0.66666 128.74 128.48 129.14 -4.6399 32 18 2 0 0 0 0.77732 1 26314 26314 18.135 4.6271 1 3515300 16679 3982 10933 10936 16776 16776 0.09238350685518526 GLAPLEVRV 9 Unmodified _GLAPLEVRV_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant nc|ENSG00000136068|O75369-5|FLNB nc|ENSG00000136068|O75369-5|FLNB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.292559 952.570566 0.026497 1.2647E-05 0.067672 3.23E-05 0.09417 4.4947E-05 477.2925359692041 133.82 0.64961 128.94 128.58 129.23 -4.8726 0.047361 0.00010711 NaN 18.135 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3408500 16680 3982 10933 10936 0.09238350685518526 GLAPLEVRV 9 Unmodified _GLAPLEVRV_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant nc|ENSG00000136068|O75369-5|FLNB nc|ENSG00000136068|O75369-5|FLNB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.292559 952.570566 0.21615 0.00010317 -0.030599 -1.4605E-05 0.18555 8.8563E-05 477.2924802116006 133.83 0.60521 129.01 128.7 129.3 -4.8175 0.1112 1.3305E-05 NaN 18.135 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3581700 16681 3982 10933 10936 0.09238350685518526 GLAPQIHDL 9 Unmodified _GLAPQIHDL_ 0 0 0 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77685546875 2 482.266542 962.51853 -0.24815 -0.00011967 0.10213 4.9252E-05 -0.14602 -7.0422E-05 482.2665345130339 105.71 0.73154 101.44 101.03 101.76 -4.2638 49 20 3 0 0 0 0.054955 1 20787 20787 71.134 25.113 1 8873900 16682 6875 10934 10937 16777 16777 0.03577187271753246 GLAPQIHDL 9 Unmodified _GLAPQIHDL_ 0 0 0 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7740478515625 2 482.266542 962.51853 0.10956 5.2836E-05 -0.17146 -8.2691E-05 -0.061906 -2.9855E-05 482.2664036757287 105.87 0.70557 101.5 101.12 101.82 -4.3764 51 19 3 0 0 0 0.07121 1 20348 20348 58.679 7.8238 1 8035200 16683 6875 10934 10937 16778 16778 0.03577187271753246 GLAPQIHDL 9 Unmodified _GLAPQIHDL_ 0 0 0 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 482.266542 962.51853 0.456 0.00021991 -0.44507 -0.00021464 0.010926 5.2692E-06 482.2662332846851 101.73 0.73613 101.73 101.4 102.13 0 0.192 -0.00012526 NaN 96.285 64 20 4 NaN NaN NaN NaN 0 NaN NaN 0 11223000 16684 6875 10934 10937 0.03577187271753246 GLAPQIHDL 9 Unmodified _GLAPQIHDL_ 0 0 0 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3 IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.266542 962.51853 0.64898 0.00031298 -0.75236 -0.00036284 -0.10338 -4.9857E-05 482.26613672238915 105.59 0.79548 101.5 101.16 101.95 -4.0913 -0.046046 -0.00042165 NaN 96.285 59 22 3 NaN NaN NaN NaN 0 NaN NaN 0 8579400 16685 6875 10934 10937 0.03577187271753246 GLARFIRF 8 Unmodified _GLARFIRF_ 0 0 0 REV__CDK1|p.D211G|1|0.25|ENSG00000170312|chr10:60792032-60792032|A/G|missense_variant REV__CDK1|p.D211G|1|0.25|ENSG00000170312|chr10:60792032-60792032|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26593017578125 2 490.295436 978.57632 0.13838 6.7848E-05 -0.04323 -2.1195E-05 0.095153 4.6653E-05 490.29534443992975 129.31 1.0086 124.68 124.12 125.12 -4.6292 52 28 3 0 0 0 0.76728 1 25388 25388 5.7604 5.7604 1 2672700 + 16686 13351 10935 10938 16779 16779 0.08617493987844682 GLARFIRF 8 Unmodified _GLARFIRF_ 0 0 0 REV__CDK1|p.D211G|1|0.25|ENSG00000170312|chr10:60792032-60792032|A/G|missense_variant REV__CDK1|p.D211G|1|0.25|ENSG00000170312|chr10:60792032-60792032|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2674560546875 2 490.295436 978.57632 0.17183 8.4248E-05 0.14351 7.0364E-05 0.31534 0.00015461 490.29544287507514 129.34 1.0083 124.52 124.06 125.06 -4.817 48 28 2 0 0 0 8448 1 24811 24811 0.62683 0.62683 1 2766300 + 16687 13351 10935 10938 16780 16780 0.08617493987844682 GLARLRHW 8 Unmodified _GLARLRHW_ 0 0 0 ENST00000489009.1_1_17:16120558-16137385:+|nuORF;PIGL|p.G150Efs*2|1|0.27|ENSG00000108474|chr17:16313565-16313565|G/-|frameshift_variant;ENST00000607144.4_1_17:16120540-16203322:+|nuORF;nc|ENSG00000108474|Q9Y2B2-2|PIGL;ENST00000498772.6_1_17:16120540-16220082:+|nuORF;ENSG00000108474|ENST00000225609|PIGL ENST00000489009.1_1_17:16120558-16137385:+|nuORF ENST00000489009.1_1_17:16120558-16137385:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.06201171875 3 336.866515 1007.57772 -0.5911 -0.00019912 -0.55272 -0.00018619 -1.1438 -0.00038531 336.86629330148276 40.422 0.77222 37.932 37.614 38.386 -2.4896 66 21 4 0 0 0 1.0276 1 7315 7315 0.45834 0 1 26476000 16688 2477 10936 10939 16781 16781 0.07423128076595731 GLARWSRSL 9 Unmodified _GLARWSRSL_ 0 0 0 ATP2B2|p.A155Pfs*59|1|0.28|ENSG00000157087|chr3:10402283-10402283|C/-|frameshift_variant ATP2B2|p.A155Pfs*59|1|0.28|ENSG00000157087|chr3:10402283-10402283|C/-|frameshift_variant ATP2B2|p.A155Pfs*59|1|0.28|ENSG00000157087|chr3:10402283-10402283|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.67724609375 2 523.298707 1044.58286 -0.64327 -0.00033662 -1.5191 -0.00079493 -2.1623 -0.0011316 523.2979019690273 109.31 0.66908 104.94 104.54 105.21 -4.3776 28 18 2 0 0 0 0.70873 1 21516 21516 12.532 6.3258 1 2258100 16689 267 10937 10940 16782 16782 0.06235387148558402 GLASHEVLGP 10 Unmodified _GLASHEVLGP_ 0 0 0 REV__ENST00000489483.5_1_3:48671282-48671495:-|nuORF REV__ENST00000489483.5_1_3:48671282-48671495:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2645568847656 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 91.057 1 86.962 86.462 87.462 -4.0946 0 0 0 0.22576 1 17350 17350 14.838 0 1 + 16690 22291 10938 10941 16783 16783 0.02332883409144415 GLASMAPD 8 Unmodified _GLASMAPD_ 0 0 0 REV__MN1|p.L1153Wfs*25|1|0.4|ENSG00000169184|chr22:27797087-27797087|G/-|frameshift_variant REV__MN1|p.L1153Wfs*25|1|0.4|ENSG00000169184|chr22:27797087-27797087|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2061462402344 2 381.178546 760.34254 NaN NaN NaN NaN NaN NaN NaN 29.569 1 27.555 27.055 28.055 -2.0139 0 0 0 0.21452 1 5317 5317 13.508 0 1 + 16691 18082 10939 10942 16784 16784 -0.04721770233845746 GLASRILDA 9 Unmodified _GLASRILDA_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2388916015625 2 458.266542 914.51853 0.61452 0.00028161 -0.53511 -0.00024523 0.079407 3.639E-05 458.2661265882672 100.61 0.45303 100.61 100.24 100.69 0 21 12 2 0 0 0 0.10699 1 19696 19696 53.404 3.8497 1 1152200 16692 7315 10940 10943 16785 16785 0.05785187271749237 GLASRILDA 9 Unmodified _GLASRILDA_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.266542 914.51853 -0.29015 -0.00013296 0.45621 0.00020907 0.16606 7.6102E-05 458.2666467706538 104.52 0.4396 100.31 100.03 100.47 -4.2183 -0.15314 0.00041071 NaN 53.404 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1298600 16693 7315 10940 10943 0.05785187271749237 GLATDVQTV 9 Unmodified _GLATDVQTV_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7472839355469 2 452.242732 902.470912 0.44156 0.00019969 -0.87638 -0.00039634 -0.43482 -0.00019664 452.24246166082594 75.801 2.3923 75.801 75.31 77.702 0 199 68 6 0 0 0 0.22334 1 14806 14806 36.044 8.4154 1 841180000 16694 8038 10941 10944 16786 16786 0.015774882809068913 GLATDVQTV 9 Unmodified _GLATDVQTV_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7573547363281 2 452.242732 902.470912 -0.11053 -4.9988E-05 -0.33442 -0.00015124 -0.44495 -0.00020123 452.2427006182064 79.613 2.9298 75.808 75.301 78.231 -3.8048 241 83 5 0 0 0 0.035055 1 15145 15145 77.984 16.627 1 654920000 16695 8038 10941 10944 16787 16787 0.015774882809068913 GLATDVQTV 9 Unmodified _GLATDVQTV_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 452.242732 902.470912 -0.076517 -3.4604E-05 -0.45255 -0.00020466 -0.52907 -0.00023927 452.2427016921787 79.184 3.0473 75.674 75.136 78.183 -3.5102 -0.10016 5.3109E-05 NaN 77.984 237 86 6 NaN NaN NaN NaN 0 NaN NaN 0 749490000 16696 8038 10941 10944 0.015774882809068913 GLATEAFSAYG 11 Unmodified _GLATEAFSAYG_ 0 0 0 nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;ADAMTS9|p.L487*|1|0.4|ENSG00000163638|chr3:64651020-64651020|A/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF;ADAMTS9|p.C1222Lfs*15|1|0.3|ENSG00000163638|chr3:64604004-64604004|C/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;ADAMTS9|p.S1884Ffs*2|1|0.35|ENSG00000163638|chr3:64533233-64533233|G/-|frameshift_variant;ENST00000482490.5_1_3:64536549-64672246:-|nuORF nc|ENSG00000163638|Q9P2N4-4|ADAMTS9 nc|ENSG00000163638|Q9P2N4-4|ADAMTS9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7925415039062 2 543.758746 1085.50294 0.012038 6.546E-06 -2.8777 -0.0015648 -2.8656 -0.0015582 543.7579498451908 46.772 0.70081 43.83 43.267 43.968 -2.9421 26 19 2 0 0 0 0.44356 1 8424 8424 30.637 6.8468 1 2470000 16697 5451 10942 10945 16788 16788 -0.03639144035969366 GLATFPATAA 10 Unmodified _GLATFPATAA_ 0 0 0 ENSG00000183317|ENST00000373048|EPHA10;nc|ENSG00000183317|Q5JZY3-2|EPHA10;EPHA10|p.R869Gfs*10|1|0.12|ENSG00000183317|chr1:37719566-37719566|G/-|frameshift_variant;nc|ENSG00000183317|Q5JZY3-3|EPHA10;EPHA10|p.E227K|1|0.44|ENSG00000183317|chr1:37761576-37761576|C/T|missense_variant ENSG00000183317|ENST00000373048|EPHA10 ENSG00000183317|ENST00000373048|EPHA10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24755859375 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 49.929 1 49.929 49.429 50.429 0 0 0 0 0.22526 1 9445 9445 21.747 2.3076 1 16698 6841 10943 10946 16789 16789 0.01858096006139931 GLATFPATAA 10 Unmodified _GLATFPATAA_ 0 0 0 ENSG00000183317|ENST00000373048|EPHA10;nc|ENSG00000183317|Q5JZY3-2|EPHA10;EPHA10|p.R869Gfs*10|1|0.12|ENSG00000183317|chr1:37719566-37719566|G/-|frameshift_variant;nc|ENSG00000183317|Q5JZY3-3|EPHA10;EPHA10|p.E227K|1|0.44|ENSG00000183317|chr1:37761576-37761576|C/T|missense_variant ENSG00000183317|ENST00000373048|EPHA10 ENSG00000183317|ENST00000373048|EPHA10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2476501464844 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 53.003 1 49.908 49.408 50.408 -3.0954 0 0 0 0.22526 1 9792 9792 21.747 2.3076 1 16699 6841 10943 10946 16790 16790 0.01858096006139931 GLATVGGG 8 Unmodified _GLATVGGG_ 0 0 0 TMCO4|p.F412Lfs*180|1|0.26|ENSG00000162542|chr1:19737399-19737400|AG/-|frameshift_variant;nc|ENSG00000162542|Q5TGY1-2|TMCO4;ENSG00000162542|ENST00000294543|TMCO4 REV__SLC7A10|p.T158Pfs*12|4|0.28|ENSG00000130876|chr19:33212888-33212888|G/-|frameshift_variant REV__SLC7A10|p.T158Pfs*12|4|0.28|ENSG00000130876|chr19:33212888-33212888|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1753845214844 2 316.174121 630.33369 NaN NaN NaN NaN NaN NaN NaN 79.633 1 75.828 75.328 76.328 -3.8048 0 0 0 0.22834 1 15111 15111 0.25148 0 1 16700 5342 10944 10947 16791 16791 0.0037362419201372177 GLAVGAFNCK 10 Unmodified _GLAVGAFNCK_ 0 0 0 REV__ENST00000570589.5_1_17:55065091-55074421:+|nuORF REV__ENST00000570589.5_1_17:55065091-55074421:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2542419433594 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 163.07 1 163.07 162.57 163.57 0 0 0 0 0.22588 1 32837 32837 11.64 0.81637 1 + 16701 15644 10945 10948 16792 16792 0.005578448826327076 GLAVLRSAE 9 Unmodified _GLAVLRSAE_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23834228515625 2 458.266542 914.51853 -0.29015 -0.00013296 0.45621 0.00020907 0.16606 7.6102E-05 458.2666467706538 104.52 0.4396 100.31 100.03 100.47 -4.2183 20 12 2 0 0 0 0.1793 1 20512 20512 39.957 1.9833 1 1298600 16702 4444 10946 10949 16793 16793 0.05785187271749237 GLAVSVGLTV 10 Unmodified _GLAVSVGLTV_ 0 0 0 nc|ENSG00000176510|Q8NH08|OR10AC1 nc|ENSG00000176510|Q8NH08|OR10AC1 nc|ENSG00000176510|Q8NH08|OR10AC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2392272949219 2 458.279118 914.543683 0.015785 7.2339E-06 0.13328 6.1078E-05 0.14906 6.8312E-05 458.27914972221254 126.23 0.73834 121.63 121.22 121.96 -4.5984 50 20 3 0 0 0 0.29692 1 24853 24853 43.858 11.553 1 5333400 16703 12480 10947 10950 16794 16794 0.08299242074326685 GLAVVGVFF 9 Unmodified _GLAVVGVFF_ 0 0 0 CA7|p.L150Ffs*58|1|0.29|ENSG00000168748|chr16:66851547-66851548|-/T|frameshift_variant CA7|p.L150Ffs*58|1|0.29|ENSG00000168748|chr16:66851547-66851548|-/T|frameshift_variant CA7|p.L150Ffs*58|1|0.29|ENSG00000168748|chr16:66851547-66851548|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 454.25567626953125 2 454.765646 907.516739 -0.055119 -2.5066E-05 0.19323 8.7875E-05 0.13811 6.2809E-05 454.7656253798374 78.236 4.0649 74.47 72.539 76.604 -3.7664 159 115 2 0 0 0 0.55732 1 15113 15113 0.40827 0.2854 1 2417400 16704 356 10948 10951 16795 16795 0.05928178253816441 GLAWGWSP 8 Unmodified _GLAWGWSP_ 0 0 0 REV__ENST00000339554.7_2_9:140342831-140343164:-|nuORF REV__ENST00000339554.7_2_9:140342831-140343164:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2173767089844 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 74.634 1 74.634 74.134 75.134 0 0 0 0 0.20378 1 14490 14490 22.453 1.999 1 + 16705 20696 10949 10952 16796 16796 -0.023224249912459527 GLCGSIAWWPN 11 Unmodified _GLCGSIAWWPN_ 0 0 0 REV__nc|ENSG00000132874|Q15849-2|SLC14A2 REV__nc|ENSG00000132874|Q15849-2|SLC14A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2730712890625 2 602.284408 1202.55426 NaN NaN NaN NaN NaN NaN NaN 127.33 1 122.72 122.22 123.22 -4.6172 0 0 0 0.23379 1 25110 25110 5.2969 0.39987 1 + 16706 16139 10950 10953 16797 16797 -0.03891098542908367 GLCHVVPP 8 Unmodified _GLCHVVPP_ 0 0 0 SPECC1|p.S120Gfs*29|1|0.36|ENSG00000128487|chr17:20204397-20204398|-/AG|frameshift_variant SPECC1|p.S120Gfs*29|1|0.36|ENSG00000128487|chr17:20204397-20204398|-/AG|frameshift_variant SPECC1|p.S120Gfs*29|1|0.36|ENSG00000128487|chr17:20204397-20204398|-/AG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.2226867675781 2 411.220549 820.426544 NaN NaN NaN NaN NaN NaN NaN 50.209 1 47.21 46.71 47.71 -2.999 0 0 0 0.21486 1 9194 9194 6.3541 0 1 16707 25779 10951 10954 16798 16798 0.009148056537242155 GLCLLHHH 8 Unmodified _GLCLLHHH_ 0 0 0 REV__DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant REV__DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24176025390625 2 465.242347 928.47014 NaN NaN NaN NaN NaN NaN NaN 48.34 1 45.471 44.971 45.971 -2.869 0 0 0 0.23294 1 9144 9144 0.063987 0 1 + 16708 13679 10952 10955 16799 16799 0.003044151508674986 GLCLQHPSPLP 11 Unmodified _GLCLQHPSPLP_ 0 0 0 REV__ENST00000351018.4_1_11:3848711-3848783:-|nuORF REV__ENST00000351018.4_1_11:3848711-3848783:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7235412597656 3 387.874348 1160.60121 NaN NaN NaN NaN NaN NaN NaN 11.867 1 11.867 11.367 12.367 0 0 0 0 0.23698 1 1609 1609 1.4551 0.26178 1 + 16709 20769 10953 10956 16800 16800 0.027337610082668107 GLCLRYHPQ 9 Unmodified _GLCLRYHPQ_ 0 0 0 REV__ENST00000539855.5_1_11:95532492-95564417:+|nuORF REV__ENST00000539855.5_1_11:95532492-95564417:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.778076171875 2 543.779293 1085.54403 NaN NaN NaN NaN NaN NaN NaN 152.6 1 147.85 147.35 148.35 -4.7523 0 0 0 0.23508 1 30322 30322 10.824 2.2306 1 + 16710 17820 10954 10957 16801 16801 0.004683385225234815 GLCPACRK 8 Unmodified _GLCPACRK_ 0 0 0 nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 424.2160339355469 2 424.217483 846.420413 NaN NaN NaN NaN NaN NaN NaN 68.551 1 65.015 64.515 65.515 -3.5362 0 0 0 0.22934 1 12887 12887 1.7423 0.41274 1 16711 12241 10955 10958 16802 16802 -0.00894035849444208 GLCVHSDAL 9 Unmodified _GLCVHSDAL_ 0 0 0 REV__ENST00000564747.1_1_16:27472673-27473321:-|nuORF REV__ENST00000564747.1_1_16:27472673-27473321:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22564697265625 2 457.723652 913.432752 0.51329 0.00023494 0.94899 0.00043438 1.4623 0.00066932 457.72400169070016 119.81 0.47151 115.16 114.84 115.31 -4.645 17 12 2 0 0 0 0.76082 1 23007 23007 13.508 5.5977 1 630920 + 16712 23097 10956 10959 16803 16803 -0.027427209054053492 GLDAIITQV 9 Unmodified _GLDAIITQV_ 0 0 0 ENST00000586749.1_1_19:649375-650400:-|nuORF ENST00000586749.1_1_19:649375-650400:-|nuORF ENST00000586749.1_1_19:649375-650400:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.259033203125 2 465.26875 928.522947 0.097891 4.5546E-05 -0.61567 -0.00028645 -0.51778 -0.00024091 465.2686856471048 157.62 0.77817 152.83 152.38 153.16 -4.7885 40 21 3 0 0 0 0.10297 1 31307 31307 54.774 6.4277 1 2347400 16713 11555 10957 10960 16804 16804 0.05582651694658125 GLDAIITQV 9 Unmodified _GLDAIITQV_ 0 0 0 ENST00000586749.1_1_19:649375-650400:-|nuORF ENST00000586749.1_1_19:649375-650400:-|nuORF ENST00000586749.1_1_19:649375-650400:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.26875 928.522947 0.13555 6.3067E-05 -0.18918 -8.8018E-05 -0.053627 -2.4951E-05 465.26861668293753 153.01 0.7048 153.01 152.67 153.37 0 0.056399 0.00023516 NaN 54.774 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 4145300 16714 11555 10957 10960 0.05582651694658125 GLDAIITQV 9 Unmodified _GLDAIITQV_ 0 0 0 ENST00000586749.1_1_19:649375-650400:-|nuORF ENST00000586749.1_1_19:649375-650400:-|nuORF ENST00000586749.1_1_19:649375-650400:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.26875 928.522947 0.13386 6.2281E-05 -0.47883 -0.00022278 -0.34497 -0.0001605 465.26861104061743 158.29 0.67648 153.02 152.69 153.36 -5.2748 0.068165 -3.4376E-05 NaN 54.774 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1801400 16715 11555 10957 10960 0.05582651694658125 GLDAIITQV 9 Unmodified _GLDAIITQV_ 0 0 0 ENST00000586749.1_1_19:649375-650400:-|nuORF ENST00000586749.1_1_19:649375-650400:-|nuORF ENST00000586749.1_1_19:649375-650400:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 465.26875 928.522947 0.42683 0.00019859 -0.71347 -0.00033196 -0.28664 -0.00013336 465.268483154883 158.22 0.60728 152.95 152.72 153.33 -5.2712 -0.0052175 -0.00025272 NaN 54.774 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1659600 16716 11555 10957 10960 0.05582651694658125 GLDALKVTV 9 Unmodified _GLDALKVTV_ 0 0 0 ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79827372-79827747:-|nuORF ENSG00000159399|ENST00000290573|HK2 ENSG00000159399|ENST00000290573|HK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23779296875 2 458.279118 914.543683 0.20902 9.5791E-05 -0.081237 -3.7229E-05 0.12779 5.8561E-05 458.2790424261182 126.52 0.70177 121.72 121.4 122.1 -4.7958 47 19 3 0 0 0 0.015383 1 24270 24270 96.936 30.479 1 5272900 16717 5206 10958 10961 16805 16805 0.08299242074326685 GLDALKVTV 9 Unmodified _GLDALKVTV_ 0 0 0 ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79827372-79827747:-|nuORF ENSG00000159399|ENST00000290573|HK2 ENSG00000159399|ENST00000290573|HK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2389831542969 2 458.279118 914.543683 0.1813 8.3086E-05 0.023846 1.0928E-05 0.20515 9.4014E-05 458.27909360488843 126.56 0.75899 121.86 121.43 122.19 -4.6998 55 20 3 0 0 0 0.0087973 1 24351 24351 107.1 39.019 1 4598900 16718 5206 10958 10961 16806 16806 0.08299242074326685 GLDDYLTRL 9 Unmodified _GLDDYLTRL_ 0 0 0 ENSG00000168944|ENST00000306467|CEP120;nc|ENSG00000168944|Q8N960-2|CEP120 ENSG00000168944|ENST00000306467|CEP120 ENSG00000168944|ENST00000306467|CEP120 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.283447265625 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 161.49 1 156.35 155.85 156.85 -5.1438 0 0 0 0.22823 1 31366 31366 15.248 1.3424 1 16719 5953 10959 10962 16807 16807 0.02053135235018999 GLDELKAQS 9 Unmodified _GLDELKAQS_ 0 0 0 REV__ENST00000453159.5_1_21:37505075-37505291:-|nuORF REV__ENST00000453159.5_1_21:37505075-37505291:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.254638671875 2 480.753464 959.492375 0.062584 3.0088E-05 -0.3297 -0.0001585 -0.26711 -0.00012842 480.753313121992 50.713 0.62532 47.668 47.356 47.981 -3.0453 41 17 3 0 0 0 0.15214 1 9326 9326 43.858 0 1 3496000 + 16720 21823 10960 10963 16808 16808 0.011008733096218748 GLDELKAQS 9 Unmodified _GLDELKAQS_ 0 0 0 REV__ENST00000453159.5_1_21:37505075-37505291:-|nuORF REV__ENST00000453159.5_1_21:37505075-37505291:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25494384765625 2 480.753464 959.492375 -0.12042 -5.7895E-05 0.1536 7.3845E-05 0.033177 1.595E-05 480.7534521981586 50.706 0.55665 47.654 47.331 47.888 -3.0517 41 15 3 0 0 0 0.34411 1 9321 9321 29.082 3.6823 1 3165200 + 16721 21823 10960 10963 16809 16809 0.011008733096218748 GLDELKAQS 9 Unmodified _GLDELKAQS_ 0 0 0 REV__ENST00000453159.5_1_21:37505075-37505291:-|nuORF REV__ENST00000453159.5_1_21:37505075-37505291:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.753464 959.492375 0.062584 3.0088E-05 -0.3297 -0.0001585 -0.26711 -0.00012842 480.753313121992 50.713 0.62532 47.668 47.356 47.981 -3.0453 -0.021025 -0.00018126 NaN 43.858 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3496000 + 16722 21823 10960 10963 0.011008733096218748 GLDGKELTQ 9 Unmodified _GLDGKELTQ_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2550964355469 2 480.753464 959.492375 0.32238 0.00015498 -0.34984 -0.00016819 -0.027469 -1.3206E-05 480.7533178358154 47.805 0.66841 47.805 47.47 48.139 0 38 18 4 0 0 0 0.2219 1 9022 9022 36.127 6.2864 1 3267000 + + 16723 13532 10961 10964 16810 16810 0.011008733096218748 GLDGKELTQ 9 Unmodified _GLDGKELTQ_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2550354003906 2 480.753464 959.492375 -0.10718 -5.1527E-05 -0.059839 -2.8768E-05 -0.16702 -8.0295E-05 480.75335719003897 50.51 0.53223 47.629 47.36 47.892 -2.8811 30 14 3 0 0 0 0.44932 1 9571 9571 22.736 0 1 3752500 + + 16724 13532 10961 10964 16811 16811 0.011008733096218748 GLDHKLGQI 9 Unmodified _GLDHKLGQI_ 0 0 0 REV__nc|ENSG00000147548|Q9BZ95-4|NSD3 REV__nc|ENSG00000147548|Q9BZ95-4|NSD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25848388671875 2 490.779816 979.545079 0.58576 0.00028748 -0.46929 -0.00023032 0.11646 5.7157E-05 490.7795480525663 102.6 0.55888 102.6 102.3 102.86 0 28 15 2 0 0 0 0.56623 1 20176 20176 27.629 0 1 3333900 + 16725 16939 10962 10965 16812 16812 0.054488761630864246 GLDIPTVQV 9 Unmodified _GLDIPTVQV_ 0 0 0 ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF ENSG00000105671|ENST00000247003|DDX49 ENSG00000105671|ENST00000247003|DDX49 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 472.2737731933594 2 471.26875 940.522947 -0.043059 -2.0292E-05 0.15179 7.1533E-05 0.10873 5.1241E-05 471.2687617132387 153.89 0.80995 153.89 153.48 154.29 0 66 22 4 0 0 0 0.066709 1 30793 30793 47.987 33.001 1 21577000 16726 2332 10963 10966 16813 16813 0.0503065169467618 GLDIPTVQV 9 Unmodified _GLDIPTVQV_ 0 0 0 ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF ENSG00000105671|ENST00000247003|DDX49 ENSG00000105671|ENST00000247003|DDX49 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 472.265625 2 471.26875 940.522947 0.44211 0.00020835 -0.31613 -0.00014898 0.12598 5.9369E-05 471.2685364848159 159.38 1.0425 154.11 153.59 154.63 -5.2712 82 28 4 0 0 0 0.061539 1 30870 30870 47.987 33.001 1 34072000 16727 2332 10963 10966 16814 16814 0.0503065169467618 GLDIPTVQV 9 Unmodified _GLDIPTVQV_ 0 0 0 ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF ENSG00000105671|ENST00000247003|DDX49 ENSG00000105671|ENST00000247003|DDX49 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 471.26875 940.522947 0.12552 5.9151E-05 -0.13598 -6.4082E-05 -0.010462 -4.9303E-06 471.2686195820631 158.79 1.0395 153.99 153.44 154.48 -4.7952 -0.038212 -2.6801E-05 NaN 47.987 90 28 4 NaN NaN NaN NaN 0 NaN NaN 0 42706000 16728 2332 10963 10966 0.0503065169467618 GLDIPTVQV 9 Unmodified _GLDIPTVQV_ 0 0 0 ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF ENSG00000105671|ENST00000247003|DDX49 ENSG00000105671|ENST00000247003|DDX49 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 471.26875 940.522947 0.13493 6.3588E-05 -0.047914 -2.2581E-05 0.087015 4.1008E-05 471.26866710336395 159.4 1.0407 154.13 153.68 154.72 -5.2748 0.099037 5.6201E-05 NaN 47.987 83 28 4 NaN NaN NaN NaN 0 NaN NaN 0 33515000 16729 2332 10963 10966 0.0503065169467618 GLDKAAIFIM 10 Unmodified _GLDKAAIFIM_ 0 0 0 REV__ENSG00000137766|ENST00000260323|UNC13C REV__ENSG00000137766|ENST00000260323|UNC13C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2023620605469 3 360.203694 1077.58925 NaN NaN NaN NaN NaN NaN NaN 77.696 1 73.929 73.429 74.429 -3.7664 0 0 0 0.22585 1 14722 14722 13.615 2.8154 1 + 16730 16407 10964 10967 16815 16815 0.05356144265033436 GLDKAGSTALY 11 Unmodified _GLDKAGSTALY_ 0 0 0 OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1 OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.779296875 2 548.287671 1094.56079 0.0016632 9.119E-07 0.14101 7.7315E-05 0.14268 7.8227E-05 548.2877366512362 66.053 0.44846 66.053 65.862 66.31 0 20 12 2 0 0 0 0.25489 1 12740 12740 46.022 9.5161 1 3249400 16731 3890 10965 10968 16816 16816 0.017291178894765835 GLDKAGSTALY 11 Unmodified _GLDKAGSTALY_ 0 0 0 OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1 OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7708740234375 2 548.287671 1094.56079 0.39772 0.00021807 -0.11957 -6.5561E-05 0.27815 0.0001525 548.2875573359447 69.777 0.6185 66.197 65.898 66.517 -3.5798 40 17 3 0 0 0 0.092892 1 13131 13131 68.76 32.254 1 5932500 16732 3890 10965 10968 16817 16817 0.017291178894765835 GLDKAGSTALY 11 Unmodified _GLDKAGSTALY_ 0 0 0 OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1 OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7708740234375 2 548.287671 1094.56079 0.41451 0.00022727 0.32113 0.00017607 0.73563 0.00040334 548.2876823419717 69.598 0.55951 66.207 65.912 66.471 -3.3903 37 15 3 0 0 0 0.69573 1 13125 13125 27.223 4.487 1 4863200 16733 3890 10965 10968 16818 16818 0.017291178894765835 GLDKQIKEI 9 Unmodified _GLDKQIKEI_ 0 0 0 ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000581764.1_1_17:61907522-61908306:+|nuORF ENST00000579147.5_1_17:61906826-61909326:+|nuORF ENST00000579147.5_1_17:61906826-61909326:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.277587890625 2 522.308406 1042.60226 -0.10776 -5.6285E-05 0.23089 0.00012059 0.12313 6.431E-05 522.3085438285998 60.756 0.76711 60.756 60.28 61.047 0 44 21 3 0 0 0 0.046871 1 11615 11615 64.927 34.223 1 8180000 16734 1707 10966 10969 16819 16819 0.08266298648823067 GLDKQIKEI 9 Unmodified _GLDKQIKEI_ 0 0 0 ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000581764.1_1_17:61907522-61908306:+|nuORF ENST00000579147.5_1_17:61906826-61909326:+|nuORF ENST00000579147.5_1_17:61906826-61909326:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2777709960938 2 522.308406 1042.60226 -0.15498 -8.0947E-05 -0.84371 -0.00044068 -0.99869 -0.00052162 522.3084425503961 63.324 0.78196 60.326 59.915 60.697 -2.9975 59 22 4 0 0 0 0.033674 1 12208 12208 87.258 37.731 1 7739800 16735 1707 10966 10969 16820 16820 0.08266298648823067 GLDKQIKEI 9 Unmodified _GLDKQIKEI_ 0 0 0 ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000581764.1_1_17:61907522-61908306:+|nuORF ENST00000579147.5_1_17:61906826-61909326:+|nuORF ENST00000579147.5_1_17:61906826-61909326:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2777709960938 2 522.308406 1042.60226 -0.5182 -0.00027066 0.23962 0.00012516 -0.27858 -0.0001455 522.3086786156489 63.931 0.73084 60.515 60.045 60.775 -3.4158 49 20 3 0 0 0 0.018239 1 11950 11950 128.57 53.002 1 6668300 16736 1707 10966 10969 16821 16821 0.08266298648823067 GLDKQIKEI 9 Unmodified _GLDKQIKEI_ 0 0 0 ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000581764.1_1_17:61907522-61908306:+|nuORF ENST00000579147.5_1_17:61906826-61909326:+|nuORF ENST00000579147.5_1_17:61906826-61909326:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2776489257812 2 522.308406 1042.60226 0.31436 0.00016419 -0.74906 -0.00039124 -0.4347 -0.00022705 522.3081517056075 63.672 0.75679 60.415 59.988 60.744 -3.2567 46 21 3 0 0 0 0.013858 1 11965 11965 121.5 45.933 1 7013700 16737 1707 10966 10969 16822 16822 0.08266298648823067 GLDKQIQEL 9 Unmodified _GLDKQIQEL_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2798461914062 2 522.290214 1042.56587 0.2289 0.00011955 -0.4046 -0.00021132 -0.17571 -9.177E-05 522.290036652015 89.862 0.59496 86.084 85.873 86.468 -3.7779 16 16 2 0 0 0 0.17734 1 17196 17196 40.239 12.61 1 1042200 16738 5677 10967 10970 16823 16823 0.04629421752088092 GLDKQIQEL 9 Unmodified _GLDKQIQEL_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.290214 1042.56587 -0.29214 -0.00015258 0.0012009 6.272E-07 -0.29094 -0.00015195 522.2906460781267 89.889 0.32685 86.03 85.9 86.226 -3.8595 -0.027182 0.0002421 NaN 40.239 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1309300 16739 5677 10967 10970 0.04629421752088092 GLDLKRFM 8 Unmodified _GLDLKRFM_ 0 0 0 REV__ENST00000282728.9_1_10:94454524-94454593:+|nuORF REV__ENST00000282728.9_1_10:94454524-94454593:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2724304199219 2 490.273312 978.532072 NaN NaN NaN NaN NaN NaN NaN 162.99 1 162.99 162.49 163.49 0 0 0 0 0.20896 1 32817 32817 18.135 3.5533 1 + 16740 20317 10968 10971 16824 16824 0.04194721779356314 GLDLRVSGY 9 Unmodified _GLDLRVSGY_ 0 0 0 ENSG00000112473|ENST00000374677|SLC39A7 ENSG00000112473|ENST00000374677|SLC39A7 ENSG00000112473|ENST00000374677|SLC39A7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2643737792969 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 103 1 98.811 98.311 99.311 -4.1861 0 0 0 0.21848 1 20247 20247 18.135 4.2289 1 16741 2697 10969 10972 16825 16825 0.02332883409144415 GLDLRVSGY 9 Unmodified _GLDLRVSGY_ 0 0 0 ENSG00000112473|ENST00000374677|SLC39A7 ENSG00000112473|ENST00000374677|SLC39A7 ENSG00000112473|ENST00000374677|SLC39A7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2643127441406 2 490.263999 978.513445 0.37748 0.00018506 0.58669 0.00028763 0.96416 0.00047269 490.264405409272 102.73 0.90856 98.413 98.045 98.954 -4.3208 30 25 2 0 0 0 0.62102 1 19736 19736 11.64 2.8949 1 1115300 16742 2697 10969 10972 16826 16826 0.02332883409144415 GLDNETHFL 9 Unmodified _GLDNETHFL_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL;FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant;FRYL|p.P2464Efs*13|1|0.04|ENSG00000075539|chr4:48523032-48523033|-/TATACAATTC|frameshift_variant ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.67724609375 2 523.251089 1044.48762 -0.63844 -0.00033406 0.9989 0.00052267 0.36046 0.00018861 523.2516396590919 109.43 0.69987 105.05 104.68 105.38 -4.3776 27 19 2 0 0 0 0.66788 1 21516 21516 22.736 17.839 1 2357200 16743 1518 10970 10973 16827 16827 -0.032840108331583906 GLDPAVIKV 9 Unmodified _GLDPAVIKV_ 0 0 0 ENSG00000165868|ENST00000369209|HSPA12A;HSPA12A|p.D650Tfs*11|1|0.25|ENSG00000165868|chr10:116674861-116674861|C/-|frameshift_variant;HSPA12A|p.R532Q|1|0.35|ENSG00000165868|chr10:116675214-116675214|C/T|missense_variant ENSG00000165868|ENST00000369209|HSPA12A ENSG00000165868|ENST00000369209|HSPA12A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 456.25775146484375 2 456.28166 910.548768 0.36802 0.00016792 -0.093864 -4.2829E-05 0.27416 0.00012509 456.2815340344965 119.68 0.76164 115.21 114.85 115.61 -4.467 38 21 2 0 0 0 0.40602 1 22990 22990 25.399 10.818 1 5840400 16744 5669 10971 10974 16828 16828 0.08991545936953571 GLDPAVIKV 9 Unmodified _GLDPAVIKV_ 0 0 0 ENSG00000165868|ENST00000369209|HSPA12A;HSPA12A|p.D650Tfs*11|1|0.25|ENSG00000165868|chr10:116674861-116674861|C/-|frameshift_variant;HSPA12A|p.R532Q|1|0.35|ENSG00000165868|chr10:116675214-116675214|C/T|missense_variant ENSG00000165868|ENST00000369209|HSPA12A ENSG00000165868|ENST00000369209|HSPA12A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 456.28166 910.548768 0.18575 8.4754E-05 -0.04296 -1.9602E-05 0.14279 6.5152E-05 456.2815792841629 119.7 0.73705 115.17 114.77 115.5 -4.5221 0.0030702 0.00011607 NaN 25.399 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6211200 16745 5669 10971 10974 0.08991545936953571 GLDPAVIKV 9 Unmodified _GLDPAVIKV_ 0 0 0 ENSG00000165868|ENST00000369209|HSPA12A;HSPA12A|p.D650Tfs*11|1|0.25|ENSG00000165868|chr10:116674861-116674861|C/-|frameshift_variant;HSPA12A|p.R532Q|1|0.35|ENSG00000165868|chr10:116675214-116675214|C/T|missense_variant ENSG00000165868|ENST00000369209|HSPA12A ENSG00000165868|ENST00000369209|HSPA12A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 456.28166 910.548768 0.52382 0.00023901 -0.352 -0.00016061 0.17181 7.8395E-05 456.28145208525666 119.77 0.74914 115.12 114.77 115.52 -4.645 -0.045767 -0.00016595 NaN 25.399 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5057900 16746 5669 10971 10974 0.08991545936953571 GLDPGKQIKL 10 Unmodified _GLDPGKQIKL_ 0 0 0 ENSG00000095002|ENST00000233146|MSH2;MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2 ENSG00000095002|ENST00000233146|MSH2 ENSG00000095002|ENST00000233146|MSH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5539245605469 3 356.885241 1067.63389 -0.18215 -6.5006E-05 0.28034 0.00010005 0.098194 3.5044E-05 356.88529659779766 84.56 0.73462 84.56 84.208 84.942 0 51 20 3 0 0 0 0.64697 1 16496 16496 16.566 4.3911 1 8975500 16747 1850 10972 10975 16829 16829 0.10278291402732975 GLDPGKQIKL 10 Unmodified _GLDPGKQIKL_ 0 0 0 ENSG00000095002|ENST00000233146|MSH2;MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2 ENSG00000095002|ENST00000233146|MSH2 ENSG00000095002|ENST00000233146|MSH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5537109375 3 356.885241 1067.63389 -0.3462 -0.00012356 0.31123 0.00011107 -0.034974 -1.2482E-05 356.88528571206854 87.909 0.93942 84.116 83.612 84.552 -3.7926 65 25 4 0 0 0 0.38172 2 17183 17183;17228 32.037 8.2364 1 11376000 16748 1850 10972 10975 16830;16831 16830 0.10278291402732975 GLDPGKQIKL 10 Unmodified _GLDPGKQIKL_ 0 0 0 ENSG00000095002|ENST00000233146|MSH2;MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2 ENSG00000095002|ENST00000233146|MSH2 ENSG00000095002|ENST00000233146|MSH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.55438232421875 3 356.885241 1067.63389 0.35391 0.00012631 -0.28805 -0.0001028 0.065864 2.3506E-05 356.8851112480537 88.159 0.87379 84.164 83.695 84.569 -3.9953 66 24 4 0 0 0 0.45334 2 16776 16776;16823 27.223 6.6423 1 10725000 16749 1850 10972 10975 16832;16833 16832 0.10278291402732975 GLDPGKQIKL 10 Unmodified _GLDPGKQIKL_ 0 0 0 ENSG00000095002|ENST00000233146|MSH2;MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2 ENSG00000095002|ENST00000233146|MSH2 ENSG00000095002|ENST00000233146|MSH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5538330078125 3 356.885241 1067.63389 -0.51638 -0.00018429 0.60652 0.00021646 0.090142 3.217E-05 356.88541108211064 87.924 0.80647 84.174 83.799 84.606 -3.7501 68 22 4 0 0 0 0.32853 2 16826 16826;16877 35.612 17.239 1 9966700 16750 1850 10972 10975 16834;16835 16834 0.10278291402732975 GLDPNKPPEL 10 Unmodified _GLDPNKPPEL_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12;PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant;PRR12|p.P506Lfs*44|1|0.33|ENSG00000126464|chr19:49599569-49599569|C/-|frameshift_variant nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2817993164062 2 540.290214 1078.56587 0.11826 6.3894E-05 0.10293 5.5611E-05 0.22119 0.00011951 540.2901865693175 87.777 1.3301 83.985 83.155 84.485 -3.7926 78 36 3 0 0 0 0.26079 1 17146 17146 40.239 22.093 1 5083600 16751 3432 10973 10976 16836 16836 0.029734217520854145 GLDPNKPPEL 10 Unmodified _GLDPNKPPEL_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12;PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant;PRR12|p.P506Lfs*44|1|0.33|ENSG00000126464|chr19:49599569-49599569|C/-|frameshift_variant nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.290214 1078.56587 0.40696 0.00021988 -0.11352 -6.1333E-05 0.29344 0.00015854 540.2901142431014 84.01 1.232 84.01 83.149 84.381 0 -0.024754 -0.00013349 NaN 40.239 58 34 2 NaN NaN NaN NaN 0 NaN NaN 0 3380500 16752 3432 10973 10976 0.029734217520854145 GLDPNKPPEL 10 Unmodified _GLDPNKPPEL_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12;PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant;PRR12|p.P506Lfs*44|1|0.33|ENSG00000126464|chr19:49599569-49599569|C/-|frameshift_variant nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.290214 1078.56587 0.44329 0.0002395 0.23249 0.00012561 0.67578 0.00036512 540.2900727573042 88 1.3393 84.004 83.159 84.499 -3.9953 -0.03005 0.0002404 NaN 40.239 77 37 3 NaN NaN NaN NaN 0 NaN NaN 0 4451300 16753 3432 10973 10976 0.029734217520854145 GLDPNKPPEL 10 Unmodified _GLDPNKPPEL_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12;PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant;PRR12|p.P506Lfs*44|1|0.33|ENSG00000126464|chr19:49599569-49599569|C/-|frameshift_variant nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.290214 1078.56587 0.23937 0.00012933 -0.092913 -5.02E-05 0.14645 7.9127E-05 540.2901083306807 87.889 1.1562 84.139 83.309 84.465 -3.7501 0.10446 -0.00011122 NaN 40.239 70 32 3 NaN NaN NaN NaN 0 NaN NaN 0 3805000 16754 3432 10973 10976 0.029734217520854145 GLDPSGARLV 10 Unmodified _GLDPSGARLV_ 0 0 0 WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70 WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 493.7806396484375 2 492.777274 983.539994 0.0063619 3.135E-06 0.23359 0.00011511 0.23995 0.00011824 492.7773626699079 87.859 0.69141 84.067 83.758 84.45 -3.7926 42 18 3 0 0 0 0.25854 1 17163 17163 31.636 17.23 1 4396500 16755 1633 10974 10977 16837 16837 0.04756572300482276 GLDPSGARLV 10 Unmodified _GLDPSGARLV_ 0 0 0 WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70 WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 492.777274 983.539994 0.28888 0.00014235 0.0073372 3.6156E-06 0.29622 0.00014597 492.77718338463774 84.294 0.66534 84.294 83.962 84.627 0 0.079498 -0.00015499 NaN 31.636 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3329800 16756 1633 10974 10977 0.04756572300482276 GLDPSGARLV 10 Unmodified _GLDPSGARLV_ 0 0 0 WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70 WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 492.777274 983.539994 0.382 0.00018824 0.037515 1.8486E-05 0.41951 0.00020673 492.77721049621005 88.267 0.59483 84.272 83.868 84.463 -3.9953 0.057054 -0.00012525 NaN 31.636 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 4460800 16757 1633 10974 10977 0.04756572300482276 GLDPSGARLV 10 Unmodified _GLDPSGARLV_ 0 0 0 WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70 WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 492.777274 983.539994 -0.046415 -2.2872E-05 0.34379 0.00016941 0.29738 0.00014654 492.7774136737571 87.976 0.73781 84.226 83.799 84.537 -3.7501 0.011362 0.00017661 NaN 31.636 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3490500 16758 1633 10974 10977 0.04756572300482276 GLDQSLQTRD 10 Unmodified _GLDQSLQTRD_ 0 0 0 REV__ENST00000580667.5_1_17:37264974-37309186:-|nuORF REV__ENST00000580667.5_1_17:37264974-37309186:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 378.24859619140625 3 378.191282 1131.55202 NaN NaN NaN NaN NaN NaN NaN 81.98 1 78.141 77.641 78.641 -3.8392 0 0 0 0.22588 1 15570 15570 6.6304 0.43853 1 + 16759 17456 10975 10978 16838 16838 -0.008498557469920343 GLDQSLQTRD 10 Unmodified _GLDQSLQTRD_ 0 0 0 REV__ENST00000580667.5_1_17:37264974-37309186:-|nuORF REV__ENST00000580667.5_1_17:37264974-37309186:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 378.1973876953125 3 378.191282 1131.55202 NaN NaN NaN NaN NaN NaN NaN 82.347 1 78.473 77.973 78.973 -3.8736 0 0 0 0.22588 1 15646 15646 6.6304 0.43853 1 + 16760 17456 10975 10978 16839 16839 -0.008498557469920343 GLDRNAPSV 9 Unmodified _GLDRNAPSV_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2497863769531 2 464.745973 927.477394 0.27312 0.00012693 1.6645 0.00077355 1.9376 0.00090048 464.74553352787336 39.536 0.83239 39.536 39.166 39.998 0 49 23 3 0 0 0 0.10157 1 7329 7329 67.838 27.881 1 3642100 16761 6448 10976 10979 16840 16840 0.010754262322734576 GLDRNAPSV 9 Unmodified _GLDRNAPSV_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2488098144531 2 464.745973 927.477394 -0.21179 -9.843E-05 1.9269 0.00089554 1.7151 0.00079711 464.7458357699406 42.29 0.90665 39.571 38.933 39.84 -2.7191 54 25 3 0 0 0 0.14842 1 7916 7916 55.503 11.73 1 5552700 16762 6448 10976 10979 16841 16841 0.010754262322734576 GLDRNAPSV 9 Unmodified _GLDRNAPSV_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24090576171875 2 464.745973 927.477394 0.019217 8.9312E-06 1.5873 0.00073771 1.6066 0.00074664 464.74575053579446 42.233 0.8832 39.627 38.98 39.863 -2.606 51 24 3 0 0 0 0.19452 1 7559 7559 47.594 15.289 1 4717600 16763 6448 10976 10979 16842 16842 0.010754262322734576 GLDSGFHSV 9 Unmodified _GLDSGFHSV_ 0 0 0 ENST00000467201.5_1_7:100174858-100176198:-|nuORF;ENSG00000077454|ENST00000310300|LRCH4 ENST00000467201.5_1_7:100174858-100176198:-|nuORF ENST00000467201.5_1_7:100174858-100176198:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23089599609375 2 459.719424 917.424296 0.030444 1.3996E-05 0.12378 5.6903E-05 0.15422 7.0899E-05 459.7194813944873 70.33 0.52566 70.33 70.032 70.558 0 25 14 2 0 0 0 0.10297 2 13646 13581;13646 54.774 26.287 1 3511200 16764 1559 10977 10980 16843;16844 16844 -0.037719515503795265 GLDSGFHSV 9 Unmodified _GLDSGFHSV_ 0 0 0 ENST00000467201.5_1_7:100174858-100176198:-|nuORF;ENSG00000077454|ENST00000310300|LRCH4 ENST00000467201.5_1_7:100174858-100176198:-|nuORF ENST00000467201.5_1_7:100174858-100176198:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2475280761719 2 459.719424 917.424296 0.15705 7.22E-05 0.042433 1.9507E-05 0.19949 9.1707E-05 459.7193907254165 73.948 0.54974 70.271 69.967 70.516 -3.6764 30 15 3 0 0 0 0.10297 1 13970 13970 54.774 26.287 1 2550200 16765 1559 10977 10980 16845 16845 -0.037719515503795265 GLDSGFHSV 9 Unmodified _GLDSGFHSV_ 0 0 0 ENST00000467201.5_1_7:100174858-100176198:-|nuORF;ENSG00000077454|ENST00000310300|LRCH4 ENST00000467201.5_1_7:100174858-100176198:-|nuORF ENST00000467201.5_1_7:100174858-100176198:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.239013671875 2 459.719424 917.424296 0.37219 0.0001711 -0.029623 -1.3618E-05 0.34257 0.00015748 459.7193740162115 73.86 0.62915 70.266 69.978 70.607 -3.594 40 17 3 0 0 0 0.54076 1 14022 14022 26.884 0 1 3661900 16766 1559 10977 10980 16846 16846 -0.037719515503795265 GLDSGFHSV 9 Unmodified _GLDSGFHSV_ 0 0 0 ENST00000467201.5_1_7:100174858-100176198:-|nuORF;ENSG00000077454|ENST00000310300|LRCH4 ENST00000467201.5_1_7:100174858-100176198:-|nuORF ENST00000467201.5_1_7:100174858-100176198:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.719424 917.424296 -0.18639 -8.5686E-05 0.39963 0.00018372 0.21325 9.8034E-05 459.71959422982616 73.544 0.56675 70.223 69.981 70.547 -3.3215 -0.049728 0.00027035 NaN 54.774 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3637100 16767 1559 10977 10980 -0.037719515503795265 GLDSPKAEV 9 Unmodified _GLDSPKAEV_ 0 0 0 RNF130|p.K102Sfs*28|1|0.34|ENSG00000113269|chr5:180040587-180040590|TGTT/-|frameshift_variant;nc|ENSG00000113269|Q86XS8-2|RNF130;ENSG00000113269|ENST00000521389|RNF130 RNF130|p.K102Sfs*28|1|0.34|ENSG00000113269|chr5:180040587-180040590|TGTT/-|frameshift_variant RNF130|p.K102Sfs*28|1|0.34|ENSG00000113269|chr5:180040587-180040590|TGTT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2303161621094 2 458.242732 914.470912 -0.12855 -5.8908E-05 -0.052274 -2.3954E-05 -0.18083 -8.2863E-05 458.24256223255327 46.483 0.66446 43.642 43.241 43.906 -2.8409 29 18 2 0 0 0 0.45972 1 8811 8811 8.1555 8.1262 1 1519700 16768 2732 10978 10981 16847 16847 0.010254882809022092 GLDSPKAEV 9 Unmodified _GLDSPKAEV_ 0 0 0 RNF130|p.K102Sfs*28|1|0.34|ENSG00000113269|chr5:180040587-180040590|TGTT/-|frameshift_variant;nc|ENSG00000113269|Q86XS8-2|RNF130;ENSG00000113269|ENST00000521389|RNF130 RNF130|p.K102Sfs*28|1|0.34|ENSG00000113269|chr5:180040587-180040590|TGTT/-|frameshift_variant RNF130|p.K102Sfs*28|1|0.34|ENSG00000113269|chr5:180040587-180040590|TGTT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22283935546875 2 458.242732 914.470912 -0.10194 -4.6715E-05 -0.32747 -0.00015006 -0.42941 -0.00019677 458.24253316951814 46.591 0.69629 43.725 43.507 44.203 -2.8666 27 19 2 0 0 0 0.16539 1 8498 8498 41.956 0.11592 1 695000 16769 2732 10978 10981 16848 16848 0.010254882809022092 GLDSSRVW 8 Unmodified _GLDSSRVW_ 0 0 0 REV__ENST00000469878.5_1_1:155100369-155106166:+|nuORF REV__ENST00000469878.5_1_1:155100369-155106166:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2338562011719 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 127.37 1 127.37 126.87 127.87 0 0 0 0 0.21486 1 25140 25140 9.3474 0.75416 1 + 16770 22020 10979 10982 16849 16849 -0.006559587964261482 GLEEYLEKV 9 Unmodified _GLEEYLEKV_ 0 0 0 nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27 nc|ENSG00000143376|Q96L92-2|SNX27 nc|ENSG00000143376|Q96L92-2|SNX27 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2763671875 2 540.284597 1078.55464 0.28824 0.00015573 0.56601 0.00030581 0.85425 0.00046154 540.2848686747805 145.49 0.73378 145.49 145.07 145.8 0 29 20 3 0 0 0 0.42844 1 29068 29068 24.021 9.1823 1 4393100 16771 4481 10980 10983 16850 16850 0.018505996579506245 GLEEYLEKV 9 Unmodified _GLEEYLEKV_ 0 0 0 nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27 nc|ENSG00000143376|Q96L92-2|SNX27 nc|ENSG00000143376|Q96L92-2|SNX27 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.284597 1078.55464 0.3012 0.00016273 0.42869 0.00023161 0.72988 0.00039434 540.2845392456761 150.05 0.8082 145.31 144.83 145.64 -4.7323 -0.11805 0.00029123 NaN 24.021 39 22 3 NaN NaN NaN NaN 0 NaN NaN 0 5799900 16772 4481 10980 10983 0.018505996579506245 GLEEYLEKV 9 Unmodified _GLEEYLEKV_ 0 0 0 nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27 nc|ENSG00000143376|Q96L92-2|SNX27 nc|ENSG00000143376|Q96L92-2|SNX27 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.284597 1078.55464 0.23736 0.00012824 0.13278 7.1737E-05 0.37014 0.00019998 540.2846728049946 150.63 0.63321 145.43 145.13 145.76 -5.1994 0.0019959 -2.8518E-05 NaN 24.021 32 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4968000 16773 4481 10980 10983 0.018505996579506245 GLEEYLEKV 9 Unmodified _GLEEYLEKV_ 0 0 0 nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27 nc|ENSG00000143376|Q96L92-2|SNX27 nc|ENSG00000143376|Q96L92-2|SNX27 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.284597 1078.55464 0.4367 0.00023594 -0.087127 -4.7074E-05 0.34957 0.00018887 540.2845024016425 150.61 0.69833 145.49 145.07 145.77 -5.1204 0.058785 -0.00026614 NaN 24.021 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4527500 16774 4481 10980 10983 0.018505996579506245 GLEGLKEWL 9 Unmodified _GLEGLKEWL_ 0 0 0 tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1 tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1 tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.281494140625 2 522.78985 1043.56515 0.7744 0.00040485 -3.1174 -0.0016297 -2.343 -0.0012249 522.7887393410092 104.34 0.67075 100.28 99.949 100.62 -4.0543 25 18 2 0 0 0 0.74655 1 20110 20110 15.847 1.0089 1 807390 16775 26376 10981 10984 16851 16851 0.04510627103036313 GLEHAVTF 8 Unmodified _GLEHAVTF_ 0 0 0 REV__ENSG00000136378|ENST00000388820|ADAMTS7;REV__ENST00000565793.5_1_15:79069566-79092863:-|nuORF REV__ENSG00000136378|ENST00000388820|ADAMTS7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2264404296875 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 150.53 1 150.53 150.03 151.03 0 0 0 0 0.21486 1 30138 30138 5.7604 0 1 + 16776 16326;23115 10982 10985 16852 16852 -0.0021045968238695423 GLEKLKNYN 9 Unmodified _GLEKLKNYN_ 0 0 0 tr|U7STL9|U7STL9_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01108PE=4SV=1 tr|U7STL9|U7STL9_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01108PE=4SV=1 tr|U7STL9|U7STL9_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01108PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 91.8 1 91.8 91.3 92.3 0 0 0 0 0.22082 1 17945 17945 17.443 2.4855 1 16777 26161 10983 10986 16853 16853 0.046171279889904326 GLESPFYE 8 Unmodified _GLESPFYE_ 0 0 0 REV__MTRF1L|p.G186Vfs*8|1|0.18|ENSG00000112031|chr6:152994643-152994643|C/-|frameshift_variant REV__MTRF1L|p.G186Vfs*8|1|0.18|ENSG00000112031|chr6:152994643-152994643|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.156005859375 3 314.479881 940.417813 -0.24547 -7.7196E-05 -0.18779 -5.9056E-05 -0.43326 -0.00013625 314.47977695502175 79.162 0.98071 75.652 75.242 76.223 -3.5102 87 27 4 0 0 0 8448 1 15479 15479 14.838 0 1 22758000 + 16778 15273 10984 10987 16854 16854 -0.054778895017534524 GLESPFYE 8 Unmodified _GLESPFYE_ 0 0 0 REV__MTRF1L|p.G186Vfs*8|1|0.18|ENSG00000112031|chr6:152994643-152994643|C/-|frameshift_variant REV__MTRF1L|p.G186Vfs*8|1|0.18|ENSG00000112031|chr6:152994643-152994643|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 314.479881 940.417813 -0.28764 -9.0456E-05 -0.067795 -2.132E-05 -0.35543 -0.00011178 314.47981124139477 75.767 0.90154 75.767 75.442 76.344 0 0.014617 5.0953E-07 NaN 14.838 75 25 4 NaN NaN NaN NaN 0 NaN NaN 0 33179000 + 16779 15273 10984 10987 -0.054778895017534524 GLESPFYE 8 Unmodified _GLESPFYE_ 0 0 0 REV__MTRF1L|p.G186Vfs*8|1|0.18|ENSG00000112031|chr6:152994643-152994643|C/-|frameshift_variant REV__MTRF1L|p.G186Vfs*8|1|0.18|ENSG00000112031|chr6:152994643-152994643|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 314.479881 940.417813 -0.058568 -1.8419E-05 -0.31183 -9.8065E-05 -0.3704 -0.00011648 314.4797341396644 79.591 1.0552 75.787 75.406 76.461 -3.8048 0.034283 -0.00022972 NaN 14.838 81 29 4 NaN NaN NaN NaN 0 NaN NaN 0 22550000 + 16780 15273 10984 10987 -0.054778895017534524 GLESPFYE 8 Unmodified _GLESPFYE_ 0 0 0 REV__MTRF1L|p.G186Vfs*8|1|0.18|ENSG00000112031|chr6:152994643-152994643|C/-|frameshift_variant REV__MTRF1L|p.G186Vfs*8|1|0.18|ENSG00000112031|chr6:152994643-152994643|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 314.479881 940.417813 -0.78326 -0.00024632 0.30301 9.5292E-05 -0.48025 -0.00015103 314.4799245188014 79.48 1.0501 75.804 75.442 76.492 -3.676 0.051328 0.00035035 NaN 14.838 85 29 4 NaN NaN NaN NaN 0 NaN NaN 0 25731000 + 16781 15273 10984 10987 -0.054778895017534524 GLETAGTLF 9 Unmodified _GLETAGTLF_ 0 0 0 ENST00000534968.5_1_1:160517020-160517359:-|nuORF ENST00000534968.5_1_1:160517020-160517359:-|nuORF ENST00000534968.5_1_1:160517020-160517359:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 454.2350158691406 2 454.739825 907.465098 0.37986 0.00017274 -0.070622 -3.2115E-05 0.30924 0.00014062 454.73980512603504 98.164 0.69599 98.164 97.844 98.54 0 35 19 2 0 0 0 0.38406 1 19238 19238 7.4771 0 1 3649700 16782 11012 10985 10988 16855 16855 0.007663897692509636 GLFEGDEY 8 Unmodified _GLFEGDEY_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2478332519531 2 465.19799 928.381428 NaN NaN NaN NaN NaN NaN NaN 52.254 1 49.167 48.667 49.667 -3.0876 0 0 0 0.23312 1 9608 9608 6.2058 0 1 16783 899 10986 10989 16856 16856 -0.08562766398472377 GLFGFAIGYV 10 Unmodified _GLFGFAIGYV_ 0 0 0 nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1 nc|ENSG00000181830|Q96A29-2|SLC35C1 nc|ENSG00000181830|Q96A29-2|SLC35C1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279296875 2 522.28166 1042.54877 NaN NaN NaN NaN NaN NaN NaN 52.635 1 52.635 52.135 53.135 0 0 0 0 0.22588 1 10008 10008 7.9102 0 1 16784 6749 10987 10990 16857 16857 0.029195459369248056 GLFHAHLKG 9 Unmodified _GLFHAHLKG_ 0 0 0 REV__ENST00000520328.5_1_14:91691273-91691387:+|nuORF REV__ENST00000520328.5_1_14:91691273-91691387:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2760925292969 2 490.277244 978.539935 NaN NaN NaN NaN NaN NaN NaN 115.31 1 115.31 114.81 115.81 0 0 0 0 0.23048 1 22693 22693 14.582 2.0501 1 + 16785 22634 10988 10991 16858 16858 0.049806170911210756 GLFIRKPFIMF 11 Unmodified _GLFIRKPFIMF_ 0 0 0 TRPC4|p.K365M|1|0.16|ENSG00000133107|chr13:37692139-37692139|T/A|missense_variant TRPC4|p.K365M|1|0.16|ENSG00000133107|chr13:37692139-37692139|T/A|missense_variant TRPC4|p.K365M|1|0.16|ENSG00000133107|chr13:37692139-37692139|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 456.93426513671875 3 456.933538 1367.77878 NaN NaN NaN NaN NaN NaN NaN 11.029 1 11.029 10.529 11.529 0 0 0 0 0.23698 1 1430 1430 0.094841 0 1 16786 26525 10989 10992 16859 16859 0.10960636278218772 GLFLISGYNLF 11 Unmodified _GLFLISGYNLF_ 0 0 0 ENSG00000110887|ENST00000228476|DAO ENSG00000110887|ENST00000228476|DAO ENSG00000110887|ENST00000228476|DAO MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7557373046875 2 622.339707 1242.66486 NaN NaN NaN NaN NaN NaN NaN 79.609 1 75.933 75.433 76.433 -3.676 0 0 0 0.22943 1 15168 15168 8.7454 0.58988 1 16787 2596 10990 10993 16860 16860 0.05323444716987069 GLFQGKTPL 9 Unmodified _GLFQGKTPL_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2536315917969 2 480.779285 959.544017 -0.028143 -1.353E-05 0.35176 0.00016912 0.32362 0.00015559 480.7793935712398 111.85 0.76522 111.85 111.41 112.18 0 49 21 3 0 0 0 0.0071415 3 21970 21950;21970;22065 110.67 66.268 1 7181600 16788 1728 10991 10994 16861;16862;16863 16862 0.06262661794187352 GLFQGKTPL 9 Unmodified _GLFQGKTPL_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2438049316406 2 480.779285 959.544017 0.091935 4.42E-05 0.12782 6.1455E-05 0.21976 0.00010566 480.7792970002192 116.05 0.69443 111.56 111.2 111.9 -4.486 49 19 3 0 0 0 7.7434E-05 2 22899 22899;22919 128.37 78.696 1 4935600 16789 1728 10991 10994 16864;16865 16864 0.06262661794187352 GLFQGKTPL 9 Unmodified _GLFQGKTPL_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2333068847656 2 480.779285 959.544017 0.30042 0.00014443 -0.076176 -3.6624E-05 0.22424 0.00010781 480.7791988898677 116.09 0.71284 111.51 111.16 111.87 -4.5815 46 20 3 0 0 0 0.028245 1 22267 22267 88.954 46.859 1 5047900 16790 1728 10991 10994 16866 16866 0.06262661794187352 GLFQGKTPL 9 Unmodified _GLFQGKTPL_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2437438964844 2 480.779285 959.544017 0.44491 0.0002139 -0.28078 -0.00013499 0.16413 7.8908E-05 480.7791655905268 115.9 0.84544 111.54 111.18 112.02 -4.3585 52 23 3 0 0 0 0.0045467 3 22303 22289;22303;22345 114.65 70.242 1 5056800 16791 1728 10991 10994 16867;16868;16869 16868 0.06262661794187352 GLFQNPKQI 9 Unmodified _GLFQNPKQI_ 0 0 0 ENST00000530961.5_1_11:66372641-66373323:+|nuORF;ENSG00000173992|ENST00000533244|CCS ENST00000530961.5_1_11:66372641-66373323:+|nuORF ENST00000530961.5_1_11:66372641-66373323:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2802734375 2 522.795466 1043.57638 -0.17118 -8.9491E-05 0.56153 0.00029357 0.39035 0.00020408 522.7956058547237 98.686 0.44983 94.554 94.335 94.784 -4.1326 21 12 2 0 0 0 0.65155 1 19383 19383 21.747 3.6117 1 1203400 16792 6321 10992 10995 16870 16870 0.056334491971938405 GLFQNPKQI 9 Unmodified _GLFQNPKQI_ 0 0 0 ENST00000530961.5_1_11:66372641-66373323:+|nuORF;ENSG00000173992|ENST00000533244|CCS ENST00000530961.5_1_11:66372641-66373323:+|nuORF ENST00000530961.5_1_11:66372641-66373323:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2807006835938 2 522.795466 1043.57638 -0.44589 -0.00023311 0.99098 0.00051808 0.5451 0.00028497 522.7958981971165 98.84 0.35422 94.571 94.403 94.757 -4.2692 16 9 2 0 0 0 0.69192 1 18893 18893 26.884 11.036 1 1332100 16793 6321 10992 10995 16871 16871 0.056334491971938405 GLFQNPKQI 9 Unmodified _GLFQNPKQI_ 0 0 0 ENST00000530961.5_1_11:66372641-66373323:+|nuORF;ENSG00000173992|ENST00000533244|CCS ENST00000530961.5_1_11:66372641-66373323:+|nuORF ENST00000530961.5_1_11:66372641-66373323:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2715454101562 2 522.795466 1043.57638 0.17334 9.0622E-05 0.55423 0.00028975 0.72758 0.00038037 522.7955364530501 98.528 0.43088 94.571 94.299 94.73 -3.9564 18 12 2 0 0 0 0.54076 1 18904 18904 20.454 7.4112 1 989160 16794 6321 10992 10995 16872 16872 0.056334491971938405 GLFRSPLSWFY 11 Unmodified _GLFRSPLSWFY_ 0 0 0 REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2373046875 3 458.239796 1371.69756 NaN NaN NaN NaN NaN NaN NaN 49.608 1 46.609 46.109 47.109 -2.999 0 0 0 0.22632 1 9075 9075 0.58532 0.57936 1 + 16795 16691 10993 10996 16873 16873 0.026576518398314875 GLFYYLICFH 10 Unmodified _GLFYYLICFH_ 0 0 0 REV__NDC1|p.N226H|1|0.32|ENSG00000058804|chr1:53818998-53818998|T/G|missense_variant REV__NDC1|p.N226H|1|0.32|ENSG00000058804|chr1:53818998-53818998|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.2903137207031 3 425.87921 1274.6158 -0.43451 -0.00018505 0.56495 0.0002406 0.13044 5.5551E-05 425.87947302086286 18.065 0.23622 16.793 16.627 16.864 -1.2722 10 6 2 0 0 0 0.91149 1 2665 2665 0.77653 0.078866 1 606030 + 16796 24343 10994 10997 16874 16874 -0.010521668436012988 GLGAYKVHI 9 Unmodified _GLGAYKVHI_ 0 0 0 ENST00000504490.2_1_4:113277971-113278631:+|nuORF ENST00000504490.2_1_4:113277971-113278631:+|nuORF ENST00000504490.2_1_4:113277971-113278631:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 479.28131103515625 2 479.279452 956.544351 NaN NaN NaN NaN NaN NaN NaN 154.87 1 149.58 149.08 150.08 -5.2854 0 0 0 0.23508 1 30035 30035 9.3474 0.75416 1 16797 10655 10995 10998 16875 16875 0.0643408151404401 GLGDTGHSW 9 Unmodified _GLGDTGHSW_ 0 0 0 ENST00000495365.5_1_1:24119163-24120565:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2 ENST00000495365.5_1_1:24119163-24120565:+|nuORF ENST00000495365.5_1_1:24119163-24120565:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2581481933594 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 78.184 1 78.184 77.684 78.684 0 0 0 0 0.23508 1 15213 15213 8.5933 2.2392 1 16798 1068 10996 10999 16876 16876 -0.06317122210191428 GLGDTGHSW 9 Unmodified _GLGDTGHSW_ 0 0 0 ENST00000495365.5_1_1:24119163-24120565:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2 ENST00000495365.5_1_1:24119163-24120565:+|nuORF ENST00000495365.5_1_1:24119163-24120565:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2425231933594 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 79.39 1 79.39 78.89 79.89 0 0 0 0 0.23508 1 15448 15448 8.5933 2.2392 1 16799 1068 10996 10999 16877 16877 -0.06317122210191428 GLGDTGHSW 9 Unmodified _GLGDTGHSW_ 0 0 0 ENST00000495365.5_1_1:24119163-24120565:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2 ENST00000495365.5_1_1:24119163-24120565:+|nuORF ENST00000495365.5_1_1:24119163-24120565:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25030517578125 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 80.166 1 76.362 75.862 76.862 -3.8048 0 0 0 0.23411 1 15212 15212 13.508 2.684 1 16800 1068 10996 10999 16878 16878 -0.06317122210191428 GLGEDIIHQL 10 Unmodified _GLGEDIIHQL_ 0 0 0 ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75 ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENST00000436347.5_1_2:190313199-190340140:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7811279296875 2 547.795663 1093.57677 0.30393 0.00016649 -0.061856 -3.3884E-05 0.24208 0.00013261 547.795415735582 151.4 0.66499 146.65 146.25 146.92 -4.7523 39 18 4 0 0 0 0.25077 1 30074 30074 60.074 16.216 1 4604700 16801 2852 10997 11000 16879 16879 0.03372824126381602 GLGEDIIHQL 10 Unmodified _GLGEDIIHQL_ 0 0 0 ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75 ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENST00000436347.5_1_2:190313199-190340140:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7738037109375 2 547.795663 1093.57677 0.44379 0.00024311 0.45989 0.00025193 0.90368 0.00049503 547.795306407398 151.83 0.67201 146.65 146.42 147.09 -5.1759 31 18 2 0 0 0 0.21236 1 29455 29455 60.074 23.947 1 1726800 16802 2852 10997 11000 16880 16880 0.03372824126381602 GLGFIYLF 8 Unmodified _GLGFIYLF_ 0 0 0 ENSG00000197496|ENST00000359271|SLC2A10 ENSG00000197496|ENST00000359271|SLC2A10 ENSG00000197496|ENST00000359271|SLC2A10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2586364746094 2 465.260197 928.50584 NaN NaN NaN NaN NaN NaN NaN 142.89 1 137.86 137.36 138.36 -5.0261 0 0 0 0.21486 1 27548 27548 11.114 0.93107 1 16803 7372 10998 11001 16881 16881 0.03872775879506207 GLGFNIGNNG 10 Unmodified _GLGFNIGNNG_ 0 0 0 REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1 REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2540283203125 2 481.738148 961.461744 0.19982 9.626E-05 -0.55454 -0.00026714 -0.35472 -0.00017088 481.7378664604417 156.95 0.86969 151.67 151.14 152.01 -5.2854 38 24 2 0 0 0 0.82094 1 30495 30495 21.747 6.9084 1 3389300 + 16804 24952 10999 11002 16882 16882 -0.020528602847548427 GLGFWDSSLN 10 Unmodified _GLGFWDSSLN_ 0 0 0 RIN3|p.V790Cfs*21|1|0.4|ENSG00000100599|chr14:92676507-92676507|G/-|frameshift_variant;nc|ENSG00000100599|Q8TB24-4|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3 RIN3|p.V790Cfs*21|1|0.4|ENSG00000100599|chr14:92676507-92676507|G/-|frameshift_variant RIN3|p.V790Cfs*21|1|0.4|ENSG00000100599|chr14:92676507-92676507|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7830200195312 2 548.258914 1094.50327 0.3243 0.0001778 -0.6218 -0.00034091 -0.2975 -0.00016311 548.2589022058946 154.71 0.73227 149.93 149.57 150.3 -4.7791 28 20 2 0 0 0 0.83242 1 30747 30747 10.074 0 1 2032700 16805 1995 11000 11003 16883 16883 -0.04019724316094653 GLGFYCGLM 9 Unmodified _GLGFYCGLM_ 0 0 0 REV__ENST00000401000.8_1_1:150446088-150446325:+|nuORF REV__ENST00000401000.8_1_1:150446088-150446325:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2457275390625 2 480.719524 959.424495 0.54711 0.00026301 -1.5521 -0.00074611 -1.005 -0.00048311 480.7188147559482 111.71 0.52594 107.48 107.35 107.88 -4.2289 25 14 2 0 0 0 0.57821 1 21569 21569 14.582 3.4672 1 1435600 + 16806 21355 11001 11004 16884 16884 -0.05683991146372591 GLGGGFGY 8 Unmodified _GLGGGFGY_ 0 0 0 ENSG00000162426|ENST00000471889|SLC45A1;ENST00000497660.5_1_1:8390216-8404070:+|nuORF ENSG00000162426|ENST00000471889|SLC45A1 ENSG00000162426|ENST00000471889|SLC45A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 364.1588134765625 2 364.174121 726.33369 NaN NaN NaN NaN NaN NaN NaN 36.319 1 33.971 33.471 34.471 -2.3479 0 0 0 0.23711 1 6424 6424 0.12286 0 1 16807 5332 11002 11005 16885 16885 -0.040423758080009975 GLGHVTGQF 9 Unmodified _GLGHVTGQF_ 0 0 0 REV__ENST00000392561.7_1_12:114260264-114261027:-|nuORF REV__ENST00000392561.7_1_12:114260264-114261027:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2225646972656 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 88.363 1 84.613 84.113 85.113 -3.7501 0 0 0 0.22621 1 16912 16912 15.847 0 1 + 16808 21222 11003 11006 16886 16886 0.00036345066200738074 GLGKTDRKKEI 11 Unmodified _GLGKTDRKKEI_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7822875976562 2 622.869694 1243.72483 0.52772 0.0003287 4.104 0.0025562 4.6317 0.0028849 622.8726511622185 147.44 0.20641 142.38 142.32 142.53 -5.0595 7 5 2 0 0 0 0.96036 1 28566 28566 4.897 0.36815 1 2021000 16809 1057 11004 11007 16887 16887 0.11272135380227155 GLGLAAPLLTR 11 Unmodified _GLGLAAPLLTR_ 0 0 0 REV__ENST00000531776.1_1_11:16812090-16812671:-|nuORF REV__ENST00000531776.1_1_11:16812090-16812671:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2713623046875 2 541.340041 1080.66553 NaN NaN NaN NaN NaN NaN NaN 121.48 1 121.48 120.98 121.98 0 0 0 0 0.23379 1 23946 23946 5.2969 0.066215 1 + 16810 22773 11005 11008 16888 16888 0.12842284156681671 GLGLELAATA 10 Unmodified _GLGLELAATA_ 0 0 0 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2383117675781 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 61.371 1 58.002 57.502 58.502 -3.3694 0 0 0 0.20365 1 11442 11442 27.629 2.2295 1 + 16811 15857 11006 11009 16889 16889 0.04662365177603078 GLGLKSLEV 9 Unmodified _GLGLKSLEV_ 0 0 0 REV__nc|ENSG00000183571|A6NFU8|PGPEP1L REV__nc|ENSG00000183571|A6NFU8|PGPEP1L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2380676269531 2 458.279118 914.543683 NaN NaN NaN NaN NaN NaN NaN 113.22 1 108.7 108.2 109.2 -4.5259 0 0 0 0.23411 1 21733 21733 13.508 0.97634 1 + 16812 24203 11007 11010 16890 16890 0.08299242074338053 GLGLLEAEE 9 Unmodified _GLGLLEAEE_ 0 0 0 REV__tr|U7T5V7|U7T5V7_FUSNUGlutaconyl-CoAdecarboxylasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00404PE=4SV=1 REV__tr|U7T5V7|U7T5V7_FUSNUGlutaconyl-CoAdecarboxylasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00404PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25848388671875 2 465.742565 929.470577 0.72475 0.00033755 -1.2135 -0.00056516 -0.4887 -0.00022761 465.7421562193921 106.34 1.4112 102.25 101.88 103.3 -4.0913 48 40 2 0 0 0 0.80737 1 20394 20394 5.2307 2.6532 1 1022200 + 16813 25426 11008 11011 16891 16891 0.003020685610522378 GLGLSPDLIVC 11 Unmodified _GLGLSPDLIVC_ 0 0 0 CTPS2|p.L488Pfs*6|1|0.03|ENSG00000047230|chrX:16617235-16617236|-/A|frameshift_variant;ENSG00000047230|ENST00000359276|CTPS2 CTPS2|p.L488Pfs*6|1|0.03|ENSG00000047230|chrX:16617235-16617236|-/A|frameshift_variant CTPS2|p.L488Pfs*6|1|0.03|ENSG00000047230|chrX:16617235-16617236|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7960815429688 2 543.796817 1085.57908 NaN NaN NaN NaN NaN NaN NaN 149.51 1 144.78 144.28 145.28 -4.7323 0 0 0 0.224 1 29696 29696 13.042 1.5478 1 16814 751 11009 11012 16892 16892 0.03971536539825138 GLGMLLKRR 9 Unmodified _GLGMLLKRR_ 0 0 0 REV__nc|ENSG00000119707|P49756-4|RBM25 REV__nc|ENSG00000119707|P49756-4|RBM25 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2688598632812 2 522.328953 1042.64335 -0.5075 -0.00026508 -1.9727 -0.0010304 -2.4802 -0.0012955 522.3290379559528 163.89 0.10825 158.85 158.76 158.86 -5.0446 4 2 2 0 0 0 0.85699 1 31910 31910 2.3027 1.778 1 5095500 + 16815 24015 11010 11013 16893 16893 0.12373781207293177 GLGPNEPGEYF 11 Unmodified _GLGPNEPGEYF_ 0 0 0 REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17 REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2528686523438 2 590.269478 1178.5244 NaN NaN NaN NaN NaN NaN NaN 84.871 1 84.871 84.371 85.371 0 0 0 0 0.23199 1 16561 16561 6.7232 0 1 + 16816 14953 11011 11014 16894 16894 -0.05771759007234323 GLGPPGRFR 9 Unmodified _GLGPPGRFR_ 0 0 0 ENST00000544214.5_1_12:8332890-8332929:+|nuORF ENST00000544214.5_1_12:8332890-8332929:+|nuORF ENST00000544214.5_1_12:8332890-8332929:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 320.1878662109375 3 319.519004 955.535184 -0.41498 -0.0001326 0.76127 0.00024324 0.34628 0.00011064 319.519189820653 26.271 0.82486 26.271 25.843 26.668 0 52 23 3 0 0 0 0.45972 1 4570 4570 8.1555 1.9497 1 6455300 16817 11107 11012 11015 16895 16895 0.0556373294837158 GLGPPGRFR 9 Unmodified _GLGPPGRFR_ 0 0 0 ENST00000544214.5_1_12:8332890-8332929:+|nuORF ENST00000544214.5_1_12:8332890-8332929:+|nuORF ENST00000544214.5_1_12:8332890-8332929:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 319.519004 955.535184 -0.38167 -0.00012195 0.41857 0.00013374 0.036909 1.1793E-05 319.5190828054161 28.328 0.83386 26.331 25.894 26.728 -1.9962 0.030006 -0.00013741 NaN 8.1555 63 23 4 NaN NaN NaN NaN 0 NaN NaN 0 4503700 16818 11107 11012 11015 0.0556373294837158 GLGPPGRSV 9 Unmodified _GLGPPGRSV_ 0 0 0 ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1 ENST00000536336.5_1_11:18633859-18655855:-|nuORF ENST00000536336.5_1_11:18633859-18655855:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 421.23419189453125 2 420.240327 838.466101 0.35364 0.00014861 -0.17208 -7.2316E-05 0.18155 7.6296E-05 420.24016029292403 44.471 1.5933 44.471 43.64 45.233 0 158 45 5 0 0 0 0.45972 1 8429 8429 10.899 9.6841 1 50717000 16819 6613 11013 11016 16896 16896 0.040406489287988734 GLGPPGRSV 9 Unmodified _GLGPPGRSV_ 0 0 0 ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1 ENST00000536336.5_1_11:18633859-18655855:-|nuORF ENST00000536336.5_1_11:18633859-18655855:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 420.240327 838.466101 -0.21617 -9.0842E-05 0.21273 8.9397E-05 -0.0034392 -1.4453E-06 420.2403960704521 47.41 1.3551 44.541 43.77 45.125 -2.869 0.01401 7.7398E-05 NaN 10.899 123 38 4 NaN NaN NaN NaN 0 NaN NaN 0 60266000 16820 6613 11013 11016 0.040406489287988734 GLGPPGRSV 9 Unmodified _GLGPPGRSV_ 0 0 0 ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1 ENST00000536336.5_1_11:18633859-18655855:-|nuORF ENST00000536336.5_1_11:18633859-18655855:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 420.240327 838.466101 -0.024339 -1.0228E-05 0.063866 2.6839E-05 0.039527 1.6611E-05 420.24029018479945 47.503 1.6695 44.561 43.79 45.459 -2.9421 0.034677 -4.7718E-05 NaN 10.899 152 47 5 NaN NaN NaN NaN 0 NaN NaN 0 59261000 16821 6613 11013 11016 0.040406489287988734 GLGPPGRSV 9 Unmodified _GLGPPGRSV_ 0 0 0 ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1 ENST00000536336.5_1_11:18633859-18655855:-|nuORF ENST00000536336.5_1_11:18633859-18655855:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 420.240327 838.466101 -0.41043 -0.00017248 0.38598 0.0001622 -0.024448 -1.0274E-05 420.24045651963615 47.484 1.6254 44.534 43.739 45.365 -2.9499 0.0071839 0.00022301 NaN 10.899 139 46 4 NaN NaN NaN NaN 0 NaN NaN 0 51194000 16822 6613 11013 11016 0.040406489287988734 GLGPSREEA 9 Unmodified _GLGPSREEA_ 0 0 0 REV__ENSG00000162702|ENST00000367353|ZNF281 REV__ENSG00000162702|ENST00000367353|ZNF281 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22119140625 2 458.230156 914.445759 0.29872 0.00013688 -0.079651 -3.6499E-05 0.21907 0.00010038 458.23007197269425 29.628 0.52203 27.735 27.439 27.961 -1.8928 33 14 3 0 0 0 0.095051 1 5045 5045 57.471 5.203 1 6266200 + 16823 17521 11014 11017 16897 16897 -0.0148856652166387 GLGPSREEA 9 Unmodified _GLGPSREEA_ 0 0 0 REV__ENSG00000162702|ENST00000367353|ZNF281 REV__ENSG00000162702|ENST00000367353|ZNF281 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.230156 914.445759 0.30863 0.00014142 0.016522 7.5709E-06 0.32515 0.00014899 458.2301580760358 27.92 0.48119 27.92 27.631 28.113 0 0.17895 0.00017335 NaN 57.471 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3567100 + 16824 17521 11014 11017 -0.0148856652166387 GLGPVAEV 8 Unmodified _GLGPVAEV_ 0 0 0 nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1 nc|ENSG00000128283|Q00587-2|CDC42EP1 nc|ENSG00000128283|Q00587-2|CDC42EP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3961791992188 1 741.414131 740.406855 0.52742 0.00039103 0.1721 0.00012759 0.69951 0.00051863 741.4141021295977 102.59 0.56312 98.266 97.973 98.536 -4.3208 26 15 2 0 0 0 8448 1 19612 19612 1.4551 1.2036 1 2021800 16825 3517 11015 11018 16898 16898 0.026267529146252855 GLGPVAEV 8 Unmodified _GLGPVAEV_ 0 0 0 nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1 nc|ENSG00000128283|Q00587-2|CDC42EP1 nc|ENSG00000128283|Q00587-2|CDC42EP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3958129882812 1 741.414131 740.406855 0.71335 0.00052889 -0.2099 -0.00015562 0.50345 0.00037327 741.4138954191942 102.38 0.61407 98.362 98.009 98.623 -4.0212 30 17 2 0 0 0 8448 1 19701 19701 1.4551 0.77368 1 2637100 16826 3517 11015 11018 16899 16899 0.026267529146252855 GLGPVRGR 8 Unmodified _GLGPVRGR_ 0 0 0 REV__ENST00000395678.7_1_22:50968091-50968440:-|nuORF REV__ENST00000395678.7_1_22:50968091-50968440:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3755493164062 1 811.489696 810.48242 0.3284 0.00026649 0.4525 0.0003672 0.78089 0.00063369 811.4897908501707 142.91 0.4236 137.89 137.65 138.07 -5.0261 17 11 2 0 0 0 0.73426 1 27534 27534 9.3474 0 1 2486200 + 16827 20111 11016 11019 16900 16900 0.06959774885569914 GLGRHNLY 8 Unmodified _GLGRHNLY_ 0 0 0 ENSG00000142615|ENST00000359621|CELA2A ENSG00000142615|ENST00000359621|CELA2A ENSG00000142615|ENST00000359621|CELA2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25006103515625 2 465.251226 928.487899 NaN NaN NaN NaN NaN NaN NaN 81.77 1 78.213 77.713 78.713 -3.557 0 0 0 0.21022 1 15975 15975 17.087 3.5787 1 16828 4432 11017 11020 16901 16901 0.020794536773564687 GLGRRLRRGYG 11 Unmodified _GLGRRLRRGYG_ 0 0 0 ENST00000430297.6_2_2:220043034-220043100:+|nuORF ENST00000430297.6_2_2:220043034-220043100:+|nuORF ENST00000430297.6_2_2:220043034-220043100:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7578125 2 630.873437 1259.73232 NaN NaN NaN NaN NaN NaN NaN 111.87 1 107.38 106.88 107.88 -4.4915 0 0 0 0.23594 1 21474 21474 3.5965 0 1 16829 9771 11018 11021 16902 16902 0.11284332491163696 GLGSLAHSIPL 11 Unmodified _GLGSLAHSIPL_ 0 0 0 nc|ENSG00000091073|Q86UW9-2|DTX2;ENSG00000091073|ENST00000430490|DTX2 nc|ENSG00000091073|Q86UW9-2|DTX2 nc|ENSG00000091073|Q86UW9-2|DTX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.262451171875 2 532.808574 1063.60259 0.096096 5.1201E-05 -2.074 -0.0011051 -1.978 -0.0010539 533.3101397791004 145.34 0.10283 145.34 145.27 145.37 0 4 2 2 0 0 0 0.7348 1 29040 29040 9.3831 0 1 929170 16830 1801 11019 11022 16903 16903 0.07333718368658992 GLGTTFKFLPA 11 Unmodified _GLGTTFKFLPA_ 0 0 0 nc|ENSG00000142609|Q9C0B2-2|CFAP74;nc|ENSG00000142609|Q9C0B2|CFAP74;ENSG00000142609|ENST00000682832|CFAP74;ENST00000270720.11_1_1:1887019-1905630:-|nuORF nc|ENSG00000142609|Q9C0B2-2|CFAP74 nc|ENSG00000142609|Q9C0B2-2|CFAP74 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3394775390625 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 128.31 1 128.31 127.81 128.81 0 0 0 0 0.23018 1 25339 25339 8.1555 0.24537 1 16831 4430 11020 11023 16904 16904 0.06935175545504535 GLGTVTSTAP 10 Unmodified _GLGTVTSTAP_ 0 0 0 REV__ZNF362|p.P171Lfs*39|1|0.4|ENSG00000160094|chr1:33280281-33280281|C/-|frameshift_variant REV__ZNF362|p.P171Lfs*39|1|0.4|ENSG00000160094|chr1:33280281-33280281|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7470703125 2 452.242732 902.470912 -0.076517 -3.4604E-05 -0.45255 -0.00020466 -0.52907 -0.00023927 452.2427016921787 79.184 3.0473 75.674 75.136 78.183 -3.5102 237 86 6 0 0 0 0.55366 1 15573 15573 21.747 2.4897 1 749490000 + 16832 17392 11021 11024 16905 16905 0.015774882809068913 GLGTVTSTAP 10 Unmodified _GLGTVTSTAP_ 0 0 0 REV__ZNF362|p.P171Lfs*39|1|0.4|ENSG00000160094|chr1:33280281-33280281|C/-|frameshift_variant REV__ZNF362|p.P171Lfs*39|1|0.4|ENSG00000160094|chr1:33280281-33280281|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.74737548828125 2 452.242732 902.470912 -0.11053 -4.9988E-05 -0.33442 -0.00015124 -0.44495 -0.00020123 452.2427006182064 79.613 2.9298 75.808 75.301 78.231 -3.8048 241 83 5 0 0 0 0.23397 1 15060 15060 42.095 2.1372 1 654920000 + 16833 17392 11021 11024 16906 16906 0.015774882809068913 GLGWWDPSF 9 Unmodified _GLGWWDPSF_ 0 0 0 REV__nc|ENSG00000125388|P32298-3|GRK4 REV__nc|ENSG00000125388|P32298-3|GRK4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2759399414062 2 532.745442 1063.47633 0.47324 0.00025211 -2.8665 -0.0015271 -2.3932 -0.001275 532.7445248070542 139.73 0.17799 134.78 134.64 134.81 -4.952 6 4 2 0 0 0 0.8204 1 26852 26852 4.756 0.42677 1 2147800 + 16834 15812 11022 11025 16907 16907 -0.052867881366410074 GLGYMKMLM 9 Unmodified _GLGYMKMLM_ 0 0 0 REV__CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant REV__CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2680053710938 2 522.257959 1042.50137 NaN NaN NaN NaN NaN NaN NaN 154.83 1 150.06 149.56 150.56 -4.7791 0 0 0 0.23508 1 30778 30778 2.3027 0 1 + 16835 13238 11023 11026 16908 16908 -0.01818515921559083 GLHETQPPSV 10 Unmodified _GLHETQPPSV_ 0 0 0 ENSG00000198700|ENST00000361565|IPO9 ENSG00000198700|ENST00000361565|IPO9 ENSG00000198700|ENST00000361565|IPO9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27392578125 2 532.772188 1063.52982 0.43139 0.00022983 -0.98593 -0.00052528 -0.55454 -0.00029545 532.771731039518 47.725 0.63616 47.725 47.398 48.034 0 28 17 2 0 0 0 0.18128 3 9023 8974;8983;9023 45.74 3.7738 1 1250200 16836 7475 11024 11027 16909;16910;16911 16911 0.0005996457521177945 GLHFVVPSV 9 Unmodified _GLHFVVPSV_ 0 0 0 TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant;ENSG00000064313|ENST00000378164|TAF2;TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant;TAF2|p.G168E|1|0.17|ENSG00000064313|chr8:119803935-119803935|C/T|missense_variant TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.2664794921875 2 477.774003 953.533452 0.44101 0.0002107 -0.27471 -0.00013125 0.1663 7.9452E-05 477.7737276449749 158.65 0.76343 153.37 153.01 153.77 -5.2711 32 20 2 0 0 0 0.24143 1 30804 30804 22.621 15.99 1 1652300 16837 1332 11025 11028 16912 16912 0.05482679139765878 GLHFVVPSV 9 Unmodified _GLHFVVPSV_ 0 0 0 TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant;ENSG00000064313|ENST00000378164|TAF2;TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant;TAF2|p.G168E|1|0.17|ENSG00000064313|chr8:119803935-119803935|C/T|missense_variant TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.774003 953.533452 0.16423 7.8463E-05 -0.018822 -8.9928E-06 0.1454 6.947E-05 477.7739211213151 158.19 0.64859 153.4 153 153.65 -4.7952 -0.024472 3.391E-05 NaN 22.621 33 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2224600 16838 1332 11025 11028 0.05482679139765878 GLHFVVPSV 9 Unmodified _GLHFVVPSV_ 0 0 0 TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant;ENSG00000064313|ENST00000378164|TAF2;TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant;TAF2|p.G168E|1|0.17|ENSG00000064313|chr8:119803935-119803935|C/T|missense_variant TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.774003 953.533452 0.16118 7.7005E-05 0.1249 5.9673E-05 0.28607 0.00013668 477.77391029353265 158.77 0.74232 153.49 153.09 153.83 -5.2748 0.072141 0.00017124 NaN 22.621 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1435600 16839 1332 11025 11028 0.05482679139765878 GLHVDVTFR 9 Unmodified _GLHVDVTFR_ 0 0 0 ENST00000567631.1_1_16:11984978-11988885:-|nuORF ENST00000567631.1_1_16:11984978-11988885:-|nuORF ENST00000567631.1_1_16:11984978-11988885:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2637329101562 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 151.91 1 151.91 151.41 152.41 0 0 0 0 0.23508 1 30427 30427 6.7232 0.51738 1 16840 11386 11026 11029 16913 16913 0.03640278537386621 GLHVWRVEK 9 Unmodified _GLHVWRVEK_ 0 0 0 ENST00000415012.1_1_2:85628700-85640330:-|nuORF;nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG ENST00000415012.1_1_2:85628700-85640330:-|nuORF ENST00000415012.1_1_2:85628700-85640330:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21746826171875 3 375.217214 1122.62981 NaN NaN NaN NaN NaN NaN NaN 11.864 1 11.864 11.364 12.364 0 0 0 0 0.23508 1 1608 1608 2.7352 0 1 16841 1203 11027 11030 16914 16914 0.07340246699709496 GLIDENPGL 9 Unmodified _GLIDENPGL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 464.7539367675781 2 464.242732 926.470912 0.13518 6.2757E-05 -0.19807 -9.1952E-05 -0.062888 -2.9196E-05 464.24252095722136 115.39 1.0191 115.39 115.03 116.05 0 54 28 3 0 0 0 0.038675 2 22700 22669;22700 60.47 35.589 1 7456400 16842 7917 11028 11031 16915;16916 16916 0.004734882809088958 GLIDENPGL 9 Unmodified _GLIDENPGL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2456970214844 2 464.242732 926.470912 0.21079 9.7856E-05 -0.38943 -0.00018079 -0.17865 -8.2935E-05 464.24250111444337 120.01 1.761 115.49 115.08 116.84 -4.5221 93 49 3 0 0 0 0.081252 2 23657 23618;23657 36.81 27.897 1 10811000 16843 7917 11028 11031 16917;16918 16918 0.004734882809088958 GLIDENPGL 9 Unmodified _GLIDENPGL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24542236328125 2 464.242732 926.470912 0.56411 0.00026189 -0.59048 -0.00027413 -0.026372 -1.2243E-05 464.24236945401276 120.17 1.0128 115.53 115.17 116.18 -4.645 66 28 3 0 0 0 0.19188 2 23072 23025;23072 38.151 11.268 1 9599600 16844 7917 11028 11031 16919;16920 16920 0.004734882809088958 GLIDENPGL 9 Unmodified _GLIDENPGL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2463073730469 2 464.242732 926.470912 0.37814 0.00017555 -0.4012 -0.00018625 -0.023057 -1.0704E-05 464.24247104930464 120.03 1.0813 115.57 115.16 116.24 -4.467 68 30 3 0 0 0 0.11483 2 23116 23071;23116 26.995 15.643 1 12583000 16845 7917 11028 11031 16921;16922 16922 0.004734882809088958 GLIDGRLTI 9 Unmodified _GLIDGRLTI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7332763671875 2 479.290017 956.565481 -0.049805 -2.3871E-05 0.11699 5.6072E-05 0.067185 3.2201E-05 479.2900306454046 140.48 0.73325 140.48 140.12 140.86 0 42 20 3 0 0 0 0.1428 1 28010 28010 59.368 15.596 1 12794000 16846 3030 11029 11032 16923 16923 0.0854604682289164 GLIDGRLTI 9 Unmodified _GLIDGRLTI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7252502441406 2 479.290017 956.565481 0.089412 4.2854E-05 -0.0079327 -3.8021E-06 0.081479 3.9052E-05 479.2899529974977 144.96 0.72682 140.29 139.96 140.68 -4.6694 52 20 3 0 0 0 0.029747 1 28743 28743 89.401 0.44686 1 10509000 16847 3030 11029 11032 16924 16924 0.0854604682289164 GLIDGRLTI 9 Unmodified _GLIDGRLTI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.740966796875 2 479.290017 956.565481 0.29019 0.00013908 -0.060074 -2.8793E-05 0.23011 0.00011029 479.28992150955327 145.35 0.79179 140.41 140.03 140.83 -4.9445 51 22 3 0 0 0 0.054822 1 28074 28074 76.825 3.8568 1 7486600 16848 3030 11029 11032 16925 16925 0.0854604682289164 GLIDGVVEA 9 Unmodified _GLIDGVVEA_ 0 0 0 HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21710205078125 2 436.739825 871.465098 0.15528 6.7819E-05 -2.1293 -0.00092997 -1.9741 -0.00086215 436.7396919398328 119.16 0.65886 119.16 118.78 119.44 0 50 18 4 0 0 0 0.10777 1 23485 23485 57.471 0 1 4924600 16849 2258 11030 11033 16926 16926 0.024223897692309038 GLIDGVVEA 9 Unmodified _GLIDGVVEA_ 0 0 0 HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2170715332031 2 436.739825 871.465098 0.048001 2.0964E-05 -2.4293 -0.001061 -2.3813 -0.00104 436.73976200102663 123.7 0.60123 119.13 118.7 119.31 -4.5757 50 16 4 0 0 0 0.14834 1 24343 24343 57.471 25.166 1 5022600 16850 2258 11030 11033 16927 16927 0.024223897692309038 GLIDGVVEA 9 Unmodified _GLIDGVVEA_ 0 0 0 HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2286071777344 2 436.739825 871.465098 0.089667 3.9161E-05 -1.9092 -0.00083381 -1.8195 -0.00079464 436.7397926859972 123.73 0.61778 119.14 118.86 119.47 -4.5926 47 17 4 0 0 0 0.037776 2 23826 23816;23826 67.344 18.196 1 5691100 16851 2258 11030 11033 16928;16929 16929 0.024223897692309038 GLIDLWAQ 8 Unmodified _GLIDLWAQ_ 0 0 0 tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1 tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1 tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23834228515625 2 458.25036 914.486168 NaN NaN NaN NaN NaN NaN NaN 62.545 1 59.584 59.084 60.084 -2.9614 0 0 0 0.17894 1 12069 12069 32.117 3.6301 1 16852 26488 11031 11034 16930 16930 0.0255039986874408 GLIEIISNA 9 Unmodified _GLIEIISNA_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480835.1_1_2:96943505-96944085:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2420654296875 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 165.54 1 160.75 160.25 161.25 -4.7898 0 0 0 0.079869 1 33162 33162 42.095 9.7891 1 16853 4537 11032 11035 16931 16931 0.05582651694669494 GLIEIISNA 9 Unmodified _GLIEIISNA_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480835.1_1_2:96943505-96944085:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25927734375 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 165.56 1 160.77 160.27 161.27 -4.7898 0 0 0 0.011905 1 33168 33168 71.134 3.0529 1 16854 4537 11032 11035 16932 16932 0.05582651694669494 GLIILIALKKP 11 Unmodified _GLIILIALKKP_ 0 0 0 REV__tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1 REV__tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.26611328125 2 589.915384 1177.81622 0.60514 0.00035698 -1.0573 -0.00062374 -0.45221 -0.00026677 590.4140219896107 164.97 0.17743 159.98 159.9 160.08 -4.9811 5 4 2 0 0 0 0.96205 1 32199 32199 0 0 1 6202000 + 16855 25174 11033 11036 16933 16933 0.2344205081549262 GLIILLQLLQ 10 Unmodified _GLIILLQLLQ_ 0 0 0 REV__ENST00000300087.6_1_16:23678897-23679026:+|nuORF REV__ENST00000300087.6_1_16:23678897-23679026:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20611572265625 3 375.253154 1122.73763 NaN NaN NaN NaN NaN NaN NaN 14.699 1 13.489 12.989 13.989 -1.2106 0 0 0 0.22588 1 1969 1969 0.69767 0.23933 1 + 16856 20395 11034 11037 16934 16934 0.18117198510435628 GLIQIELTKA 10 Unmodified _GLIQIELTKA_ 0 0 0 ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75 ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENST00000436347.5_1_2:190313199-190340140:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7955322265625 2 543.331882 1084.64921 0.10511 5.7111E-05 3.0341 0.0016485 3.1392 0.0017056 543.3340450426681 141.79 0.23732 136.8 136.74 136.97 -4.9877 8 6 2 0 0 0 0.3248 1 27311 27311 15.739 1.8326 1 3444600 16857 2852 11035 11038 16935 16935 0.11027158199931364 GLISGVKSL 9 Unmodified _GLISGVKSL_ 0 0 0 ENSG00000116668|ENST00000367500|SWT1 ENSG00000116668|ENST00000367500|SWT1 ENSG00000116668|ENST00000367500|SWT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2164001464844 2 437.273835 872.533118 NaN NaN NaN NaN NaN NaN NaN 108.67 1 104.35 103.85 104.85 -4.32 0 0 0 0.23508 1 21413 21413 12.241 1.1262 1 16858 2939 11036 11039 16936 16936 0.0917525941989652 GLKDQKFLKK 10 Unmodified _GLKDQKFLKK_ 0 0 0 REV__NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant REV__NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.6010131835938 2 602.874248 1203.73394 NaN NaN NaN NaN NaN NaN NaN 171.4 1 166.49 165.99 166.99 -4.9149 0 0 0 0.22588 1 33943 33943 6.2058 0.9089 1 + 16859 18330 11037 11040 16937 16937 0.14022528736541062 GLKIIAIILII 11 Unmodified _GLKIIAIILII_ 0 0 0 REV__tr|U7SRF2|U7SRF2_FUSNUProteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01579PE=4SV=1 REV__tr|U7SRF2|U7SRF2_FUSNUProteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01579PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2679443359375 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 68.548 1 68.548 68.048 69.048 0 0 0 0 0.23698 1 13257 13257 0.35063 0 1 + 16860 25029 11038 11041 16938 16938 0.2543522147532258 GLKIIAIILII 11 Unmodified _GLKIIAIILII_ 0 0 0 REV__tr|U7SRF2|U7SRF2_FUSNUProteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01579PE=4SV=1 REV__tr|U7SRF2|U7SRF2_FUSNUProteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01579PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.265869140625 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 90.36 1 86.582 86.082 87.082 -3.7779 0 0 0 0.23698 1 17292 17292 0.35063 0 1 + 16861 25029 11038 11041 16939 16939 0.2543522147532258 GLKKFRWY 8 Unmodified _GLKKFRWY_ 0 0 0 PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant;ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ;PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 548.958984375 2 549.316369 1096.61818 NaN NaN NaN NaN NaN NaN NaN 69.092 1 65.913 65.413 66.413 -3.1796 0 0 0 0.21486 1 13429 13429 2.8892 0.31174 1 16862 4236 11039 11042 16940 16940 0.07374049676354844 GLKKRDKKN 9 Unmodified _GLKKRDKKN_ 0 0 0 ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7715454101562 2 543.840739 1085.66693 NaN NaN NaN NaN NaN NaN NaN 132.53 1 127.89 127.39 128.39 -4.6399 0 0 0 0.23508 1 26125 26125 7.2892 0.93513 1 16863 4288 11040 11043 16941 16941 0.1275191824547619 GLKLLWRIFIF 11 Unmodified _GLKLLWRIFIF_ 0 0 0 REV__nc|ENSG00000160404|Q8N2E6|TOR2A REV__nc|ENSG00000160404|Q8N2E6|TOR2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 703.4376831054688 2 703.439558 1404.86456 NaN NaN NaN NaN NaN NaN NaN 174.91 1 170.02 169.52 170.52 -4.8916 0 0 0 0.23698 1 34840 34840 1.4819 0.15237 1 + 16864 24118 11041 11044 16942 16942 0.17832544455404786 GLKQLQDEL 9 Unmodified _GLKQLQDEL_ 0 0 0 REV__UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant REV__UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2801513671875 2 522.290214 1042.56587 -0.29214 -0.00015258 0.0012009 6.272E-07 -0.29094 -0.00015195 522.2906460781267 89.889 0.32685 86.03 85.9 86.226 -3.8595 11 8 2 0 0 0 0.34411 1 17576 17576 29.082 5.2918 1 1309300 + 16865 17125 11042 11045 16943 16943 0.04629421752088092 GLKQLQDEL 9 Unmodified _GLKQLQDEL_ 0 0 0 REV__UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant REV__UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2586669921875 2 522.290214 1042.56587 0.2289 0.00011955 -0.4046 -0.00021132 -0.17571 -9.177E-05 522.290036652015 89.862 0.59496 86.084 85.873 86.468 -3.7779 16 16 2 0 0 0 0.44932 1 17222 17222 22.736 4.3632 1 1042200 + 16866 17125 11042 11045 16944 16944 0.04629421752088092 GLKRACMAL 9 Unmodified _GLKRACMAL_ 0 0 0 REV__ENSG00000007341|ENST00000358039|ST7L;REV__ENST00000497457.5_1_1:113121036-113161548:-|nuORF REV__ENSG00000007341|ENST00000358039|ST7L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7665710449219 2 481.76734 961.520127 NaN NaN NaN NaN NaN NaN NaN 153.3 1 148.08 147.58 148.58 -5.2209 0 0 0 0.23508 1 29713 29713 9.3474 2.9933 1 + 16867 13887;22403 11043 11046 16945 16945 0.03782781764493848 GLKTTTPG 8 Unmodified _GLKTTTPG_ 0 0 0 ENSG00000104320|ENST00000265433|NBN;NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7215576171875 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 42.651 1 40.045 39.545 40.545 -2.606 0 0 0 0.21486 1 7675 7675 5.7604 0.52976 1 16868 2227 11044 11047 16946 16946 0.032541379433382644 GLLAPLAWP 9 Unmodified _GLLAPLAWP_ 0 0 0 REV__ENSG00000167434|ENST00000300900|CA4 REV__ENSG00000167434|ENST00000300900|CA4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 469.2772521972656 2 469.278921 936.543289 NaN NaN NaN NaN NaN NaN NaN 149.14 1 149.14 148.64 149.64 0 0 0 0 0.23508 1 29857 29857 9.3474 0 1 + 16869 17926 11045 11048 16947 16947 0.07247867145133569 GLLARPVLALR 11 Unmodified _GLLARPVLALR_ 0 0 0 ENST00000463337.1_2_20:62669539-62670381:+|nuORF;ENST00000358393.1_2_20:62669539-62670381:+|nuORF ENST00000463337.1_2_20:62669539-62670381:+|nuORF ENST00000463337.1_2_20:62669539-62670381:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2675170898438 2 589.890232 1177.76591 NaN NaN NaN NaN NaN NaN NaN 77.91 1 77.91 77.41 78.41 0 0 0 0 0.23698 1 15156 15156 1.4819 0 1 16870 8990 11046 11049 16948 16948 0.18413941210337725 GLLARYSEA 9 Unmodified _GLLARYSEA_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26434326171875 2 490.263999 978.513445 0.14289 7.0054E-05 -0.073015 -3.5797E-05 0.069876 3.4258E-05 490.26409947470756 52.443 0.34865 49.355 49.202 49.551 -3.0876 11 9 2 0 0 0 0.35556 1 9633 9633 12.241 11.026 1 976390 16871 4411 11047 11050 16949 16949 0.023328834091330464 GLLAWRRSS 9 Unmodified _GLLAWRRSS_ 0 0 0 ENST00000454756.6_1_4:53588897-53617733:-|nuORF;ENST00000443173.5_1_4:53612066-53617778:-|nuORF ENST00000454756.6_1_4:53588897-53617733:-|nuORF ENST00000454756.6_1_4:53588897-53617733:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.2010498046875 3 349.201564 1044.58286 NaN NaN NaN NaN NaN NaN NaN 119.42 1 114.78 114.28 115.28 -4.645 0 0 0 0.23508 1 22920 22920 2.2828 1.5062 1 16872 9910 11048 11051 16950 16950 0.06235387148558402 GLLDMNKGL 9 Unmodified _GLLDMNKGL_ 0 0 0 ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-2|ERI3;nc|ENSG00000117419|O43414-3|ERI3 ENSG00000117419|ENST00000372257|ERI3 ENSG00000117419|ENST00000372257|ERI3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23236083984375 2 480.762778 959.511002 NaN NaN NaN NaN NaN NaN NaN 131.02 1 126.38 125.88 126.88 -4.6359 0 0 0 0.10202 1 25820 25820 37.974 13.3 1 16873 2985 11049 11052 16951 16951 0.02962711679822405 GLLELWYSI 9 Unmodified _GLLELWYSI_ 0 0 0 REV__ENST00000508252.1_1_5:137463382-137465094:-|nuORF REV__ENST00000508252.1_1_5:137463382-137465094:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7813110351562 2 547.30005 1092.58555 0.19979 0.00010934 -2.7584 -0.0015097 -2.5587 -0.0014004 547.2997850679601 135.48 0.21063 130.84 130.69 130.9 -4.6399 6 5 2 0 0 0 0.77732 1 26720 26720 12.532 0.89125 1 896520 + 16874 15322 11050 11053 16952 16952 0.04295797762847542 GLLETTVQKV 10 Unmodified _GLLETTVQKV_ 0 0 0 ENSG00000175467|ENST00000312397|SART1;ENST00000533386.1_1_11:65744508-65745532:+|nuORF ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.772216796875 2 544.321514 1086.62847 0.69147 0.00037638 -0.61025 -0.00033217 0.081219 4.4209E-05 544.3210948755352 103.51 0.5854 103.51 103.13 103.72 0 25 16 2 0 0 0 0.3662 1 20336 20336 49.554 18.918 1 3470200 16875 6412 11051 11054 16953 16953 0.08862567820256118 GLLETTVQKV 10 Unmodified _GLLETTVQKV_ 0 0 0 ENSG00000175467|ENST00000312397|SART1;ENST00000533386.1_1_11:65744508-65745532:+|nuORF ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7831420898438 2 544.321514 1086.62847 -0.21503 -0.00011705 0.56515 0.00030763 0.35012 0.00019058 544.3216809284451 107.3 0.6916 102.98 102.61 103.31 -4.32 49 19 3 0 0 0 0.25077 1 21096 21096 60.074 18.234 1 4480300 16876 6412 11051 11054 16954 16954 0.08862567820256118 GLLETTVQKV 10 Unmodified _GLLETTVQKV_ 0 0 0 ENSG00000175467|ENST00000312397|SART1;ENST00000533386.1_1_11:65744508-65745532:+|nuORF ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7705078125 2 544.321514 1086.62847 -0.026938 -1.4663E-05 0.39598 0.00021554 0.36905 0.00020088 544.3216342908569 107.44 0.6474 103.03 102.76 103.4 -4.4121 34 18 2 0 0 0 0.33162 1 20608 20608 43.772 17.504 1 3208900 16877 6412 11051 11054 16955 16955 0.08862567820256118 GLLETTVQKV 10 Unmodified _GLLETTVQKV_ 0 0 0 ENSG00000175467|ENST00000312397|SART1;ENST00000533386.1_1_11:65744508-65745532:+|nuORF ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.792724609375 2 544.321514 1086.62847 0.78742 0.00042861 -0.45158 -0.0002458 0.33584 0.00018281 544.3212346823026 107.24 0.64646 103.1 102.81 103.46 -4.135 47 18 3 0 0 0 0.45099 1 20613 20613 43.772 18.373 1 3482300 16878 6412 11051 11054 16956 16956 0.08862567820256118 GLLFIYGCLP 10 Unmodified _GLLFIYGCLP_ 0 0 0 ENSG00000151229|ENST00000280871|SLC2A13 ENSG00000151229|ENST00000280871|SLC2A13 ENSG00000151229|ENST00000280871|SLC2A13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7736206054688 2 548.298996 1094.58344 0.33167 0.00018185 -4.374 -0.0023982 -4.0423 -0.0022164 548.7980375666822 146.8 0.27396 146.8 146.7 146.98 0 17 7 3 0 0 0 1.1136 1 29350 29350 0.26539 0.13757 1 1948600 16879 4853 11052 11055 16957 16957 0.03993045753395563 GLLGAGGTVSV 11 Unmodified _GLLGAGGTVSV_ 0 0 0 ENST00000595286.1_1_19:39971511-39973801:+|nuORF;ENST00000598125.5_1_19:39971493-39973604:+|nuORF;TIMM50|p.H211Mfs*21|1|0.44|ENSG00000105197|chr19:39486426-39486426|C/-|frameshift_variant;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50 ENST00000595286.1_1_19:39971511-39973801:+|nuORF ENST00000595286.1_1_19:39971511-39973801:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2585144042969 2 465.766374 929.518196 0.11731 5.4637E-05 -0.20933 -9.75E-05 -0.092026 -4.2863E-05 465.7662905307794 126.85 0.66393 126.85 126.5 127.17 0 30 18 2 0 0 0 0.088714 1 25035 25035 68.081 15.812 1 3568000 16880 2285 11053 11056 16958 16958 0.05061767551910634 GLLGAGGTVSV 11 Unmodified _GLLGAGGTVSV_ 0 0 0 ENST00000595286.1_1_19:39971511-39973801:+|nuORF;ENST00000598125.5_1_19:39971493-39973604:+|nuORF;TIMM50|p.H211Mfs*21|1|0.44|ENSG00000105197|chr19:39486426-39486426|C/-|frameshift_variant;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50 ENST00000595286.1_1_19:39971511-39973801:+|nuORF ENST00000595286.1_1_19:39971511-39973801:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.766374 929.518196 -0.003046 -1.4187E-06 0.24181 0.00011263 0.23877 0.00011121 465.7663580430533 131.64 0.58495 126.79 126.49 127.08 -4.8527 3.0255E-05 0.00017266 NaN 68.081 31 16 2 NaN NaN NaN NaN 0 NaN NaN 0 4318600 16881 2285 11053 11056 0.05061767551910634 GLLGAGGTVSV 11 Unmodified _GLLGAGGTVSV_ 0 0 0 ENST00000595286.1_1_19:39971511-39973801:+|nuORF;ENST00000598125.5_1_19:39971493-39973604:+|nuORF;TIMM50|p.H211Mfs*21|1|0.44|ENSG00000105197|chr19:39486426-39486426|C/-|frameshift_variant;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50 ENST00000595286.1_1_19:39971511-39973801:+|nuORF ENST00000595286.1_1_19:39971511-39973801:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 465.766374 929.518196 0.18708 8.7137E-05 0.09014 4.1984E-05 0.27722 0.00012912 465.7663002849527 131.62 0.64827 126.82 126.53 127.18 -4.799 0.030158 3.1373E-05 NaN 68.081 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2784600 16882 2285 11053 11056 0.05061767551910634 GLLHLIKTAL 10 Unmodified _GLLHLIKTAL_ 0 0 0 REV__ENSG00000158623|ENST00000425248|COPG2 REV__ENSG00000158623|ENST00000425248|COPG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2377624511719 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 69.069 1 65.679 65.179 66.179 -3.3903 0 0 0 0.22588 1 13053 13053 2.086 0.17963 1 + 16883 17339 11054 11057 16959 16959 0.15527758679127146 GLLLHRLLLR 10 Unmodified _GLLLHRLLLR_ 0 0 0 ENST00000535984.1_1_11:113285130-113295217:-|nuORF ENST00000535984.1_1_11:113285130-113295217:-|nuORF ENST00000535984.1_1_11:113285130-113295217:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.300537109375 2 602.40605 1202.79755 NaN NaN NaN NaN NaN NaN NaN 115.68 1 115.68 115.18 116.18 0 0 0 0 0.22588 1 22768 22768 3.5965 1.9439 1 16884 11021 11055 11058 16960 16960 0.20425933964293108 GLLLPGDPVV 10 Unmodified _GLLLPGDPVV_ 0 0 0 ENST00000423701.6_1_3:42605067-42605130:-|nuORF ENST00000423701.6_1_3:42605067-42605130:-|nuORF ENST00000423701.6_1_3:42605067-42605130:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2740783691406 2 490.294768 978.574983 0.18612 9.1254E-05 1.2507 0.0006132 1.4368 0.00070445 490.29532262915615 125.05 0.81774 125.05 124.51 125.33 0 33 22 2 0 0 0 0.86261 1 24561 24561 10.824 0 1 2512800 16885 9693 11056 11059 16961 16961 0.08483815108422732 GLLNTPDIL 9 Unmodified _GLLNTPDIL_ 0 0 0 nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1 nc|ENSG00000165181|Q5VXU9-3|SHOC1 nc|ENSG00000165181|Q5VXU9-3|SHOC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7280578613281 2 478.276575 954.538597 0.18714 8.9504E-05 0.55597 0.00026591 0.74311 0.00035541 478.2765439119209 123.62 0.91975 119.05 118.56 119.48 -4.5757 79 25 4 0 0 0 0.56709 1 24286 24286 1.2148 0 1 15788000 16886 12429 11057 11060 16962 16962 0.0595093821170849 GLLQMGKSWKP 11 Unmodified _GLLQMGKSWKP_ 0 0 0 ENST00000225941.5_1_17:47300115-47300355:+|nuORF ENST00000225941.5_1_17:47300115-47300355:+|nuORF ENST00000225941.5_1_17:47300115-47300355:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7816162109375 2 622.844633 1243.67471 NaN NaN NaN NaN NaN NaN NaN 87.765 1 83.769 83.269 84.269 -3.9953 0 0 0 0.23379 1 16713 16713 5.2969 0.066215 1 16887 8146 11058 11061 16963 16963 0.06262309450721659 GLLSSTLG 8 Unmodified _GLLSSTLG_ 0 0 0 REV__ENST00000338154.10_1_X:53964416-53964545:-|nuORF REV__ENST00000338154.10_1_X:53964416-53964545:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 374.4977111816406 2 374.215986 746.417419 NaN NaN NaN NaN NaN NaN NaN 150.96 1 150.96 150.46 151.46 0 0 0 0 0.2396 1 30231 30231 0.30703 0 1 + 16888 20681 11059 11062 16964 16964 0.03406735569069497 GLLTWIIL 8 Unmodified _GLLTWIIL_ 0 0 0 REV__ENSG00000169676|ENST00000304374|DRD5 REV__ENSG00000169676|ENST00000304374|DRD5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2379455566406 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 77.153 1 73.689 73.189 74.189 -3.4633 0 0 0 0.21486 1 15061 15061 0.45834 0 1 + 16889 18113 11060 11063 16965 16965 0.11265324322005199 GLLTWIIL 8 Unmodified _GLLTWIIL_ 0 0 0 REV__ENSG00000169676|ENST00000304374|DRD5 REV__ENSG00000169676|ENST00000304374|DRD5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.23052978515625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 105.61 1 101.23 100.73 101.73 -4.3764 0 0 0 0.21486 1 20247 20247 0.45834 0 1 + 16890 18113 11060 11063 16966 16966 0.11265324322005199 GLLWRKGF 8 Unmodified _GLLWRKGF_ 0 0 0 REV__ENSG00000177108|ENST00000319374|ZDHHC22 REV__ENSG00000177108|ENST00000319374|ZDHHC22 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 326.1598205566406 3 326.19575 975.565421 NaN NaN NaN NaN NaN NaN NaN 57.029 1 57.029 56.529 57.529 0 0 0 0 0.23538 1 10898 10898 0.12286 0 1 + 16891 18541 11061 11064 16967 16967 0.0766609161356655 GLMADPMKV 9 Unmodified _GLMADPMKV_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24542236328125 2 481.245906 960.477259 NaN NaN NaN NaN NaN NaN NaN 107.69 1 107.69 107.19 108.19 0 0 0 0 0.17061 1 21174 21174 27.629 8.1898 1 16892 7273 11062 11065 16968 16968 -0.004560330835829518 GLMADPMKV 9 Unmodified _GLMADPMKV_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24566650390625 2 481.245906 960.477259 -0.21083 -0.00010146 -0.0099275 -4.7776E-06 -0.22076 -0.00010624 481.2458055849456 111.94 0.64123 107.52 107.16 107.81 -4.4231 41 17 3 0 0 0 0.17935 3 22082 22032;22079;22082 39.95 27.116 1 3287500 16893 7273 11062 11065 16969;16970;16971 16971 -0.004560330835829518 GLMADPMKV 9 Unmodified _GLMADPMKV_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2459411621094 2 481.245906 960.477259 -0.015403 -7.4126E-06 -0.16217 -7.8045E-05 -0.17758 -8.5458E-05 481.2458286412213 112.05 0.62801 107.52 107.2 107.83 -4.5259 43 17 3 0 0 0 0.2219 4 21536 21463;21485;21489;21536 36.127 28.072 1 4317100 16894 7273 11062 11065 16972;16973;16974;16975 16975 -0.004560330835829518 GLMADPMKV 9 Unmodified _GLMADPMKV_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2545166015625 2 481.245906 960.477259 0.53342 0.00025671 -0.88776 -0.00042723 -0.35434 -0.00017052 481.24558428319915 111.78 0.70032 107.55 107.11 107.81 -4.2289 37 19 3 0 0 0 0.25183 3 21540 21473;21522;21540 34.402 11.253 1 1945400 16895 7273 11062 11065 16976;16977;16978 16978 -0.004560330835829518 GLMDRYVYY 9 Unmodified _GLMDRYVYY_ 0 0 0 REV__ENSG00000003509|ENST00000002125|NDUFAF7 REV__ENSG00000003509|ENST00000002125|NDUFAF7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2620849609375 2 590.278792 1178.54303 NaN NaN NaN NaN NaN NaN NaN 118.41 1 113.9 113.4 114.4 -4.502 0 0 0 0.23508 1 23347 23347 9.3474 1.4373 1 + 16896 13830 11063 11066 16979 16979 -0.039099206370337924 GLMFLRWG 8 Unmodified _GLMFLRWG_ 0 0 0 REV__ENST00000520312.1_1_8:89554881-89721577:+|nuORF REV__ENST00000520312.1_1_8:89554881-89721577:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2650146484375 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 52.465 1 49.369 48.869 49.869 -3.0954 0 0 0 0.22676 1 9683 9683 3.5871 0 1 + 16897 22633 11064 11067 16980 16980 0.02082756470485947 GLMGAGIAQV 10 Unmodified _GLMGAGIAQV_ 0 0 0 ENSG00000084754|ENST00000380649|HADHA;ENSG00000138796|ENST00000309522|HADH;nc|ENSG00000138796|Q16836-3|HADH;nc|ENSG00000138796|Q16836-2|HADH ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2372741699219 2 458.74967 915.484787 -0.084356 -3.8698E-05 0.069306 3.1794E-05 -0.01505 -6.904E-06 458.74981942215175 129.95 0.67744 125.31 125.04 125.72 -4.6359 28 18 2 0 0 0 0.55706 1 25651 25651 21.747 10.923 1 2640300 16898 1672 11065 11068 16981 16981 0.023664425083552487 GLMGAGIAQV 10 Unmodified _GLMGAGIAQV_ 0 0 0 ENSG00000084754|ENST00000380649|HADHA;ENSG00000138796|ENST00000309522|HADH;nc|ENSG00000138796|Q16836-3|HADH;nc|ENSG00000138796|Q16836-2|HADH ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.7436218261719 2 458.74967 915.484787 0.16864 7.7362E-05 -0.32119 -0.00014735 -0.15256 -6.9986E-05 458.7496715852817 130.15 0.69714 125.38 125.07 125.77 -4.7725 32 19 2 0 0 0 0.042361 1 25048 25048 30.239 26.652 1 1527700 16899 1672 11065 11068 16982 16982 0.023664425083552487 GLMGAGIAQV 10 Unmodified _GLMGAGIAQV_ 0 0 0 ENSG00000084754|ENST00000380649|HADHA;ENSG00000138796|ENST00000309522|HADH;nc|ENSG00000138796|Q16836-3|HADH;nc|ENSG00000138796|Q16836-2|HADH ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.74967 915.484787 0.24746 0.00011352 -0.138 -6.3308E-05 0.10946 5.0213E-05 458.74973931345045 125.31 0.52774 125.31 124.94 125.47 0 -0.047333 -8.9332E-05 NaN 30.239 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1301700 16900 1672 11065 11068 0.023664425083552487 GLMKKAYEL 9 Unmodified _GLMKKAYEL_ 0 0 0 ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;MEF2D|p.Q182Pfs*20|1|0.31|ENSG00000116604|chr1:156479648-156479649|-/G|frameshift_variant;ENST00000558983.5_1_15:100173318-100211695:+|nuORF ENSG00000213999|ENST00000424583|MEF2B;ENSG00000116604|ENST00000348159|MEF2D ENSG00000116604|ENST00000348159|MEF2D MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 351.530517578125 3 351.531811 1051.5736 -0.52662 -0.00018512 -0.16531 -5.811E-05 -0.69192 -0.00024323 351.5317065355717 69.876 0.53582 69.876 69.635 70.171 0 30 14 3 0 0 0 0.45972 1 13504 13504 8.1555 0 1 2939400 16901 2936;7715 11066 11069 16983 16983 0.049878577480058084 GLMKKAYEL 9 Unmodified _GLMKKAYEL_ 0 0 0 ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;MEF2D|p.Q182Pfs*20|1|0.31|ENSG00000116604|chr1:156479648-156479649|-/G|frameshift_variant;ENST00000558983.5_1_15:100173318-100211695:+|nuORF ENSG00000213999|ENST00000424583|MEF2B;ENSG00000116604|ENST00000348159|MEF2D ENSG00000116604|ENST00000348159|MEF2D MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 351.531811 1051.5736 -0.52662 -0.00018512 -0.16531 -5.811E-05 -0.69192 -0.00024323 351.5317065355717 69.876 0.53582 69.876 69.635 70.171 0 0.033469 0.0004524 NaN 8.1555 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2939400 16902 2936;7715 11066 11069 0.049878577480058084 GLMKKAYEL 9 Unmodified _GLMKKAYEL_ 0 0 0 ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;MEF2D|p.Q182Pfs*20|1|0.31|ENSG00000116604|chr1:156479648-156479649|-/G|frameshift_variant;ENST00000558983.5_1_15:100173318-100211695:+|nuORF ENSG00000213999|ENST00000424583|MEF2B;ENSG00000116604|ENST00000348159|MEF2D ENSG00000116604|ENST00000348159|MEF2D MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 351.531811 1051.5736 -0.38413 -0.00013504 -0.64193 -0.00022566 -1.0261 -0.00036069 351.5315375977669 73.169 0.53714 69.858 69.562 70.099 -3.3107 0.015604 -5.0248E-05 NaN 8.1555 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3772500 16903 2936;7715 11066 11069 0.049878577480058084 GLMKKAYEL 9 Unmodified _GLMKKAYEL_ 0 0 0 ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;MEF2D|p.Q182Pfs*20|1|0.31|ENSG00000116604|chr1:156479648-156479649|-/G|frameshift_variant;ENST00000558983.5_1_15:100173318-100211695:+|nuORF ENSG00000213999|ENST00000424583|MEF2B;ENSG00000116604|ENST00000348159|MEF2D ENSG00000116604|ENST00000348159|MEF2D MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 351.531811 1051.5736 -0.3148 -0.00011066 -0.97066 -0.00034122 -1.2855 -0.00045188 351.53144954577334 73.34 0.6274 69.794 69.504 70.131 -3.5459 -0.049073 -0.00039693 NaN 8.1555 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3718800 16904 2936;7715 11066 11069 0.049878577480058084 GLNEHNHHL 9 Unmodified _GLNEHNHHL_ 0 0 0 ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF ENSG00000159692|ENST00000382952|CTBP1 ENSG00000159692|ENST00000382952|CTBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5567321777344 3 357.509056 1069.50534 -0.4486 -0.00016038 0.44637 0.00015958 -0.0022252 -7.9554E-07 357.5091940678999 17.297 0.34426 16.024 15.868 16.213 -1.2722 26 9 4 0 0 0 0.8372 1 2562 2562 13.042 5.1323 1 9080700 16905 5215 11067 11070 16984 16984 -0.026632507876229283 GLNEHNHHL 9 Unmodified _GLNEHNHHL_ 0 0 0 ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF ENSG00000159692|ENST00000382952|CTBP1 ENSG00000159692|ENST00000382952|CTBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.509056 1069.50534 -0.51746 -0.000185 0.52189 0.00018658 0.0044328 1.5848E-06 357.50923855090497 17.288 0.35247 15.977 15.817 16.169 -1.3109 -0.048396 0.00012054 NaN 13.042 24 9 3 NaN NaN NaN NaN 0 NaN NaN 0 8880500 16906 5215 11067 11070 -0.026632507876229283 GLNMNFME 8 Unmodified _GLNMNFME_ 0 0 0 ENSG00000134760|ENST00000257192|DSG1;nc|ENSG00000134760|Q02413-2|DSG1 ENSG00000134760|ENST00000257192|DSG1 ENSG00000134760|ENST00000257192|DSG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.1385498046875 3 319.138584 954.393924 NaN NaN NaN NaN NaN NaN NaN 79.623 1 75.947 75.447 76.447 -3.676 0 0 0 0.21486 1 15172 15172 1.8442 0 1 16907 3873 11068 11071 16985 16985 -0.08509769531428901 GLNMRVIQ 8 Unmodified _GLNMRVIQ_ 0 0 0 LHX1|p.E399Kfs*2|5|0.23|ENSG00000273706|chr17:36943098-36943098|C/-|frameshift_variant;ENSG00000089116|ENST00000261731|LHX5;ENSG00000273706|ENST00000614239|LHX1 LHX1|p.E399Kfs*2|5|0.23|ENSG00000273706|chr17:36943098-36943098|C/-|frameshift_variant LHX1|p.E399Kfs*2|5|0.23|ENSG00000273706|chr17:36943098-36943098|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2488708496094 2 465.763112 929.511671 -0.18956 -8.8288E-05 0.16951 7.8951E-05 -0.020046 -9.3368E-06 465.7631289788261 71.275 0.60199 68.026 67.743 68.345 -3.2492 30 16 2 0 0 0 0.34033 1 13881 13881 30.225 5.5509 1 2573900 16908 1750 11069 11072 16986 16986 0.04409551119533717 GLNMRVIQ 8 Unmodified _GLNMRVIQ_ 0 0 0 LHX1|p.E399Kfs*2|5|0.23|ENSG00000273706|chr17:36943098-36943098|C/-|frameshift_variant;ENSG00000089116|ENST00000261731|LHX5;ENSG00000273706|ENST00000614239|LHX1 LHX1|p.E399Kfs*2|5|0.23|ENSG00000273706|chr17:36943098-36943098|C/-|frameshift_variant LHX1|p.E399Kfs*2|5|0.23|ENSG00000273706|chr17:36943098-36943098|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2504577636719 2 465.763112 929.511671 0.35809 0.00016679 -0.54288 -0.00025285 -0.18479 -8.6067E-05 465.7628311842225 71.603 0.56348 68.065 67.731 68.295 -3.5385 24 15 2 0 0 0 0.81042 1 13613 13613 11.64 0 1 2442300 16909 1750 11069 11072 16987 16987 0.04409551119533717 GLNRFFHRRKL 11 Unmodified _GLNRFFHRRKL_ 0 0 0 REV__nc|ENSG00000198689|Q92581-3|SLC9A6 REV__nc|ENSG00000198689|Q92581-3|SLC9A6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78759765625 3 481.952983 1442.83712 NaN NaN NaN NaN NaN NaN NaN 13.87 1 12.698 12.198 13.198 -1.173 0 0 0 0.23698 1 1835 1835 0.094841 0 1 + 16910 19434 11070 11073 16988 16988 0.13341453967723282 GLNRPPISV 9 Unmodified _GLNRPPISV_ 0 0 0 REV__nc|ENSG00000115414|P02751-2|FN1 REV__nc|ENSG00000115414|P02751-2|FN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.1907043457031 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 79.678 1 76.168 75.668 76.668 -3.5102 0 0 0 0.23508 1 15561 15561 4.897 1.31 1 + 16911 24008 11071 11074 16989 16989 0.07245180025699938 GLPAKVNCMPG 11 Unmodified _GLPAKVNCMPG_ 0 0 0 REV__ENSG00000158859|ENST00000367996|ADAMTS4 REV__ENSG00000158859|ENST00000367996|ADAMTS4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7786865234375 2 543.775362 1085.53617 NaN NaN NaN NaN NaN NaN NaN 67.475 1 67.475 66.975 67.975 0 0 0 0 0.22862 1 13043 13043 9.3831 0.78985 1 + 16912 17350 11072 11075 16990 16990 -0.0031755678926401743 GLPDAACRA 9 Unmodified _GLPDAACRA_ 0 0 0 REV__ENST00000473764.5_1_X:48755764-48755857:+|nuORF REV__ENST00000473764.5_1_X:48755764-48755857:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2156982421875 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 79.2 1 79.2 78.7 79.7 0 0 0 0 0.23508 1 15410 15410 12.532 3.1841 1 + 16913 20100 11073 11076 16991 16991 -0.02387587702617111 GLPGQPPQL 9 Unmodified _GLPGQPPQL_ 0 0 0 REV__KMT2D|p.P3648L|1|0.18|ENSG00000167548|chr12:49033762-49033762|G/A|missense_variant REV__KMT2D|p.P3648L|1|0.18|ENSG00000167548|chr12:49033762-49033762|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7552185058594 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 154.73 1 149.47 148.97 149.97 -5.2526 0 0 0 0.23508 1 30002 30002 11.64 0 1 + 16914 23732 11074 11077 16992 16992 0.04053802243026894 GLPPPPRFVSH 11 Unmodified _GLPPPPRFVSH_ 0 0 0 ENST00000591991.1_1_19:5666960-5667302:+|nuORF ENST00000591991.1_1_19:5666960-5667302:+|nuORF ENST00000591991.1_1_19:5666960-5667302:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.279296875 2 602.33529 1202.65603 NaN NaN NaN NaN NaN NaN NaN 155.58 1 150.8 150.3 151.3 -4.7791 0 0 0 0.22632 1 30926 30926 1.4074 1.3636 1 16915 11632 11075 11078 16993 16993 0.06280515871185344 GLPSWQYQC 9 Unmodified _GLPSWQYQC_ 0 0 0 nc|ENSG00000179994|Q495Y7|SPDYE7P;SPDYE3|p.R442C|1|0.14|ENSG00000214300|chr7:100317133-100317133|C/T|missense_variant nc|ENSG00000179994|Q495Y7|SPDYE7P nc|ENSG00000179994|Q495Y7|SPDYE7P MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2653198242188 2 541.242209 1080.46987 NaN NaN NaN NaN NaN NaN NaN 90.891 1 87.031 86.531 87.531 -3.8595 0 0 0 0.23508 1 17786 17786 8.5933 0 1 16916 12492 11076 11079 16994 16994 -0.06715049359650038 GLPVQLHF 8 Unmodified _GLPVQLHF_ 0 0 0 REV__ENST00000488920.2_1_6:31124706-31124823:-|nuORF REV__ENST00000488920.2_1_6:31124706-31124823:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.0394592285156 3 304.176356 909.507237 NaN NaN NaN NaN NaN NaN NaN 43.624 1 40.884 40.384 41.384 -2.7392 0 0 0 0.21486 1 8181 8181 1.8442 0.19162 1 + 16917 22280 11077 11080 16995 16995 0.04886409968287353 GLPVYFPH 8 Unmodified _GLPVYFPH_ 0 0 0 REV__ENSG00000111676|ENST00000396684|ATN1 REV__ENSG00000111676|ENST00000396684|ATN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2490539550781 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 179.88 1 175.02 174.52 175.52 -4.868 0 0 0 0.21486 1 35852 35852 2.8892 0 1 + 16918 15254 11078 11081 16996 16996 0.013587210769401281 GLQAKSNR 8 Unmodified _GLQAKSNR_ 0 0 0 ENST00000535325.5_1_3:45961640-45961769:-|nuORF ENST00000535325.5_1_3:45961640-45961769:-|nuORF ENST00000535325.5_1_3:45961640-45961769:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2325439453125 2 437.248683 872.482814 NaN NaN NaN NaN NaN NaN NaN 18.898 1 17.263 16.763 17.763 -1.6351 0 0 0 0.21486 1 2821 2821 8.5933 2.2392 1 16919 11016 11079 11082 16997 16997 0.04147149814752993 GLQCPPGQP 9 Unmodified _GLQCPPGQP_ 0 0 0 REV__ENST00000308893.8_1_16:29985864-29989121:+|nuORF REV__ENST00000308893.8_1_16:29985864-29989121:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.72930908203125 2 448.71837 895.422187 0.066797 2.9973E-05 0.79407 0.00035631 0.86087 0.00038629 448.71879712352074 123.66 0.70558 119.09 118.74 119.45 -4.5757 44 19 3 0 0 0 0.34815 1 24369 24369 1.6919 0 1 4933900 + 16920 20464 11080 11083 16998 16998 -0.029707035598335096 GLQGRVTTV 9 Unmodified _GLQGRVTTV_ 0 0 0 ENSG00000181817|ENST00000315732|LSM10;ENST00000476041.1_1_1:36859367-36863370:-|nuORF ENSG00000181817|ENST00000315732|LSM10 ENSG00000181817|ENST00000315732|LSM10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24176025390625 2 465.771991 929.529429 -0.14257 -6.6403E-05 0.19401 9.0366E-05 0.051447 2.3963E-05 465.77205217058435 48.374 0.49319 45.505 45.236 45.729 -2.869 30 13 3 0 0 0 0.11402 1 9149 9149 60.074 6.2411 1 2531700 16921 6746 11081 11084 16999 16999 0.061845896460340555 GLQGRVTTV 9 Unmodified _GLQGRVTTV_ 0 0 0 ENSG00000181817|ENST00000315732|LSM10;ENST00000476041.1_1_1:36859367-36863370:-|nuORF ENSG00000181817|ENST00000315732|LSM10 ENSG00000181817|ENST00000315732|LSM10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24176025390625 2 465.771991 929.529429 -0.081324 -3.7878E-05 0.30825 0.00014357 0.22693 0.0001057 465.772053549382 48.519 0.45467 45.569 45.331 45.785 -2.9499 22 12 2 0 0 0 0.56623 1 8859 8859 27.629 0 1 1883000 16922 6746 11081 11084 17000 17000 0.061845896460340555 GLQLQLNEE 9 Unmodified _GLQLQLNEE_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA;ENST00000559156.5_1_15:70968828-70976706:-|nuORF;ENST00000560523.5_1_15:70964229-70991966:-|nuORF;UACA|p.L426Hfs*14|1|0.04|ENSG00000137831|chr15:70669407-70669408|-/AAAT|frameshift_variant nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2695922851562 2 522.272021 1042.52949 -0.17174 -8.9695E-05 0.36446 0.00019035 0.19272 0.00010065 522.2722095558729 95.903 0.68037 91.854 91.444 92.124 -4.0496 42 19 3 0 0 0 0.60805 1 18719 18719 12.532 0 1 7379600 16923 4118 11082 11085 17001 17001 0.009925448553985916 GLQPSTPPPK 10 Unmodified _GLQPSTPPPK_ 0 0 0 ENSG00000135631|ENST00000486777|RAB11FIP5 ENSG00000135631|ENST00000486777|RAB11FIP5 ENSG00000135631|ENST00000486777|RAB11FIP5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.185546875 3 341.194075 1020.5604 NaN NaN NaN NaN NaN NaN NaN 110.05 1 105.87 105.37 106.37 -4.1826 0 0 0 0.22588 1 21180 21180 1.9064 0.25375 1 16924 3941 11083 11086 17002 17002 0.05093742960286818 GLQRSSLVG 9 Unmodified _GLQRSSLVG_ 0 0 0 REV__ENSG00000055955|ENST00000266041|ITIH4 REV__ENSG00000055955|ENST00000266041|ITIH4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.1797180175781 3 306.178536 915.513779 NaN NaN NaN NaN NaN NaN NaN 68.244 1 64.854 64.354 65.354 -3.3903 0 0 0 0.23508 1 12880 12880 5.7319 0 1 + 16925 14119 11084 11087 17003 17003 0.05264303129013115 GLREKAEYL 9 Unmodified _GLREKAEYL_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 55.501 1 52.617 52.117 53.117 -2.8837 0 0 0 0.22082 1 10623 10623 17.443 3.8278 1 16926 3342 11085 11088 17004 17004 0.046171279889904326 GLREKAEYL 9 Unmodified _GLREKAEYL_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 55.761 1 52.585 52.085 53.085 -3.1761 0 0 0 0.23508 1 10359 10359 6.1918 0.46 1 16927 3342 11085 11088 17005 17005 0.046171279889904326 GLREPPVPP 9 Unmodified _GLREPPVPP_ 0 0 0 ENSG00000107816|ENST00000454422|LZTS2 ENSG00000107816|ENST00000454422|LZTS2 ENSG00000107816|ENST00000454422|LZTS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7780456542969 2 481.276909 960.539266 0.093983 4.5232E-05 0.02894 1.3928E-05 0.12292 5.916E-05 481.27692959380755 60.579 1.8293 57.355 56.533 58.362 -3.2237 85 51 2 0 0 0 0.37458 1 11286 11286 2.8827 1.1908 1 1364400 16928 2440 11086 11089 17006 17006 0.05741777651417124 GLRGYLSY 8 Unmodified _GLRGYLSY_ 0 0 0 ENST00000535009.5_1_11:68816453-68846494:+|nuORF;TPCN2|p.G597Wfs*6|1|0.39|ENSG00000162341|chr11:69085234-69085235|-/T|frameshift_variant;TPCN2|p.R704Afs*17|1|0.1|ENSG00000162341|chr11:69087132-69087132|C/-|frameshift_variant;ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68845982-68853340:+|nuORF ENST00000535009.5_1_11:68816453-68846494:+|nuORF ENST00000535009.5_1_11:68816453-68846494:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2490539550781 2 464.747985 927.481417 -0.025214 -1.1718E-05 0.13554 6.2993E-05 0.11033 5.1275E-05 464.74827170890916 97.211 0.38076 93.113 92.873 93.254 -4.0978 13 10 2 0 0 0 0.53444 1 19073 19073 26.341 1.6674 1 886790 16929 5322 11087 11090 17007 17007 0.014775157260032756 GLRHWAELFHQ 11 Unmodified _GLRHWAELFHQ_ 0 0 0 REV__ENST00000217173.6_1_20:3090836-3102040:-|nuORF REV__ENST00000217173.6_1_20:3090836-3102040:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25177001953125 3 465.242311 1392.7051 NaN NaN NaN NaN NaN NaN NaN 48.305 1 45.363 44.863 45.863 -2.9421 0 0 0 0.22632 1 8817 8817 0.026206 0 1 + 16930 20022 11088 11091 17008 17008 0.02445804160129228 GLRIAGFF 8 Unmodified _GLRIAGFF_ 0 0 0 REV__nc|ENSG00000158813|Q92838-9|EDA REV__nc|ENSG00000158813|Q92838-9|EDA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 440.7568054199219 2 440.755613 879.496673 NaN NaN NaN NaN NaN NaN NaN 149.42 1 144.23 143.73 144.73 -5.1994 0 0 0 0.23366 1 28947 28947 0.62683 0.50396 1 + 16931 17348 11089 11092 17009 17009 0.05210427313852506 GLRPSCLGA 9 Unmodified _GLRPSCLGA_ 0 0 0 ENST00000351773.7_1_10:38384091-38384521:+|nuORF;ENST00000452075.7_1_10:43046018-43047669:-|nuORF ENST00000351773.7_1_10:38384091-38384521:+|nuORF ENST00000351773.7_1_10:38384091-38384521:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2291564941406 2 437.234187 872.453822 0.47755 0.0002088 -0.46339 -0.00020261 0.014158 6.1903E-06 437.2339183114941 45.592 0.69901 45.592 45.165 45.864 0 47 19 3 0 0 0 0.5428 1 8490 8490 4.897 0 1 6345800 16932 8927 11090 11093 17010 17010 0.012492891941064954 GLRRVWVPV 9 Unmodified _GLRRVWVPV_ 0 0 0 ENST00000512400.1_1_4:675749-678780:-|nuORF ENST00000512400.1_1_4:675749-678780:-|nuORF ENST00000512400.1_1_4:675749-678780:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2644653320312 2 541.335093 1080.65563 NaN NaN NaN NaN NaN NaN NaN 87.71 1 83.715 83.215 84.215 -3.9953 0 0 0 0.1966 1 16704 16704 0.073264 0.043981 1 16933 10755 11091 11094 17011 17011 0.118531409419802 GLRTDAWP 8 Unmodified _GLRTDAWP_ 0 0 0 ENST00000382162.7_1_22:31904270-32000328:+|nuORF ENST00000382162.7_1_22:31904270-32000328:+|nuORF ENST00000382162.7_1_22:31904270-32000328:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23858642578125 2 458.237784 914.461016 -0.12358 -5.6631E-05 0.88877 0.00040727 0.76518 0.00035064 458.2381682955414 59.788 0.94103 56.855 56.469 57.41 -2.9333 35 26 2 0 0 0 0.56049 1 11420 11420 24.674 5.2349 1 1770400 16934 9339 11092 11095 17012 17012 0.00036345066178000707 GLRTDAWP 8 Unmodified _GLRTDAWP_ 0 0 0 ENST00000382162.7_1_22:31904270-32000328:+|nuORF ENST00000382162.7_1_22:31904270-32000328:+|nuORF ENST00000382162.7_1_22:31904270-32000328:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23858642578125 2 458.237784 914.461016 0.036249 1.6611E-05 0.68976 0.00031607 0.72601 0.00033268 458.2380597892279 60.244 0.67417 56.93 56.516 57.19 -3.3139 38 18 3 0 0 0 0.56049 1 11174 11174 24.674 4.2203 1 1394700 16935 9339 11092 11095 17013 17013 0.00036345066178000707 GLRVPPPVA 9 Unmodified _GLRVPPPVA_ 0 0 0 nc|ENSG00000254402|Q50LG9|LRRC24 nc|ENSG00000254402|Q50LG9|LRRC24 nc|ENSG00000254402|Q50LG9|LRRC24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75592041015625 2 453.281995 904.549437 0.51822 0.0002349 -0.36237 -0.00016425 0.15585 7.0644E-05 453.2817822208342 105.36 2.3716 105.36 104.34 106.72 0 127 67 2 0 0 0 0.46598 1 20539 20539 2.6312 0 1 4919000 16936 12627 11093 11096 17014 17014 0.09334385376655518 GLRWWFYVFPL 11 Unmodified _GLRWWFYVFPL_ 0 0 0 REV__ENST00000398238.8_1_17:44834336-44834585:+|nuORF REV__ENST00000398238.8_1_17:44834336-44834585:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3993530273438 2 742.39789 1482.78123 NaN NaN NaN NaN NaN NaN NaN 127 1 122.2 121.7 122.7 -4.7958 0 0 0 0.23698 1 24377 24377 1.3295 0 1 + 16937 21326 11094 11097 17015 17015 0.05914808007537431 GLSAAIPEGF 10 Unmodified _GLSAAIPEGF_ 0 0 0 REV__ENST00000511535.1_1_4:5823489-5889136:-|nuORF REV__ENST00000511535.1_1_4:5823489-5889136:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2544860839844 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 158.58 1 153.3 152.8 153.8 -5.2712 0 0 0 0.22588 1 30769 30769 10.824 2.2306 1 + 16938 14294 11095 11098 17016 17016 0.009820786605587273 GLSAASSPEP 10 Unmodified _GLSAASSPEP_ 0 0 0 nc|ENSG00000127152|Q9C0K0-2|BCL11B;ENSG00000127152|ENST00000357195|BCL11B nc|ENSG00000127152|Q9C0K0-2|BCL11B nc|ENSG00000127152|Q9C0K0-2|BCL11B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2332458496094 2 458.224539 914.434526 0.0031988 1.4658E-06 0.23401 0.00010723 0.23721 0.0001087 458.224614042524 53.741 0.66636 50.653 50.321 50.988 -3.0876 33 18 2 0 0 0 0.42762 1 9956 9956 10.151 8.2366 1 4778800 16939 3465 11096 11099 17017 17017 -0.026113886158100286 GLSAVAELN 9 Unmodified _GLSAVAELN_ 0 0 0 ENST00000522863.1_1_7:27224765-27224843:+|nuORF ENST00000522863.1_1_7:27224765-27224843:+|nuORF ENST00000522863.1_1_7:27224765-27224843:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23590087890625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 61.09 1 61.09 60.59 61.59 0 0 0 0 0.091359 1 11721 11721 39.957 3.8303 1 16940 10865 11097 11100 17018 17018 0.019015056264606756 GLSAVAELN 9 Unmodified _GLSAVAELN_ 0 0 0 ENST00000522863.1_1_7:27224765-27224843:+|nuORF ENST00000522863.1_1_7:27224765-27224843:+|nuORF ENST00000522863.1_1_7:27224765-27224843:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23590087890625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.885 1 60.887 60.387 61.387 -2.9975 0 0 0 0.039428 1 12350 12350 57.471 0 1 16941 10865 11097 11100 17019 17019 0.019015056264606756 GLSEAELKD 9 Unmodified _GLSEAELKD_ 0 0 0 NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant;ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1 NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2420654296875 2 481.245472 960.476391 -0.039409 -1.8965E-05 0.02721 1.3095E-05 -0.012199 -5.8708E-06 481.24538744658315 74.415 2.2491 71.051 69.582 71.831 -3.3643 164 63 7 0 0 0 0.50943 1 14303 14303 4.7159 2.0847 1 81098000 16942 7146 11098 11101 17020 17020 -0.005428329272831434 GLSEENLSL 9 Unmodified _GLSEENLSL_ 0 0 0 REV__ENST00000432307.1_1_X:110864088-110864580:-|nuORF REV__ENST00000432307.1_1_X:110864088-110864580:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2457580566406 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 96.955 1 96.955 96.455 97.455 0 0 0 0 0.1924 1 18996 18996 24.674 0 1 + 16943 14156 11099 11102 17021 17021 -0.005428329272717747 GLSEENLSL 9 Unmodified _GLSEENLSL_ 0 0 0 REV__ENST00000432307.1_1_X:110864088-110864580:-|nuORF REV__ENST00000432307.1_1_X:110864088-110864580:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2450866699219 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 101.2 1 97.044 96.544 97.544 -4.1594 0 0 0 0.1924 1 19895 19895 24.674 0 1 + 16944 14156 11099 11102 17022 17022 -0.005428329272717747 GLSEENLSL 9 Unmodified _GLSEENLSL_ 0 0 0 REV__ENST00000432307.1_1_X:110864088-110864580:-|nuORF REV__ENST00000432307.1_1_X:110864088-110864580:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2452392578125 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 101.44 1 97.119 96.619 97.619 -4.3208 0 0 0 0.1924 1 19413 19413 24.674 0 1 + 16945 14156 11099 11102 17023 17023 -0.005428329272717747 GLSEPTSFML 10 Unmodified _GLSEPTSFML_ 0 0 0 RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant;ENSG00000174373|ENST00000680220|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENST00000443361.1_1_9:108287234-108287549:+|nuORF RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2650146484375 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 145.56 1 145.56 145.06 146.06 0 0 0 0 0.22535 1 29091 29091 20.454 1.1966 1 16946 6346 11100 11103 17024 17024 -0.02089029248213592 GLSESSVKV 9 Unmodified _GLSESSVKV_ 0 0 0 ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000466762.1_1_3:137982532-137982673:+|nuORF ENST00000460495.5_1_3:137956301-138014731:+|nuORF ENST00000460495.5_1_3:137956301-138014731:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7521667480469 2 453.250557 904.486562 0.095779 4.3412E-05 -0.11193 -5.0732E-05 -0.016149 -7.3195E-06 453.25044540167755 56.036 0.60246 56.036 55.656 56.258 0 40 16 3 0 0 0 0.058839 1 10700 10700 67.838 52.881 1 5653400 16947 2774 11101 11104 17025 17025 0.0304977479796662 GLSESSVKV 9 Unmodified _GLSESSVKV_ 0 0 0 ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000466762.1_1_3:137982532-137982673:+|nuORF ENST00000460495.5_1_3:137956301-138014731:+|nuORF ENST00000460495.5_1_3:137956301-138014731:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7518005371094 2 453.250557 904.486562 -0.17771 -8.0547E-05 -0.31987 -0.00014498 -0.49758 -0.00022553 453.2503585784618 58.639 0.66458 55.729 55.337 56.001 -2.9105 43 18 3 0 0 0 0.041463 3 11260 11215;11260;11264 67.838 55.611 1 4659300 16948 2774 11101 11104 17026;17027;17028 17027 0.0304977479796662 GLSESSVKV 9 Unmodified _GLSESSVKV_ 0 0 0 ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000466762.1_1_3:137982532-137982673:+|nuORF ENST00000460495.5_1_3:137956301-138014731:+|nuORF ENST00000460495.5_1_3:137956301-138014731:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75213623046875 2 453.250557 904.486562 0.032182 1.4587E-05 -0.28754 -0.00013033 -0.25536 -0.00011574 453.25036723649913 59.012 0.63927 55.76 55.488 56.127 -3.2517 43 17 3 0 0 0 0.039965 2 10987 10943;10987 86.332 70.057 1 3656500 16949 2774 11101 11104 17029;17030 17030 0.0304977479796662 GLSESSVKV 9 Unmodified _GLSESSVKV_ 0 0 0 ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000466762.1_1_3:137982532-137982673:+|nuORF ENST00000460495.5_1_3:137956301-138014731:+|nuORF ENST00000460495.5_1_3:137956301-138014731:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7518005371094 2 453.250557 904.486562 0.06416 2.908E-05 -0.31688 -0.00014363 -0.25272 -0.00011455 453.25038713576816 59.084 0.62993 55.879 55.538 56.168 -3.2052 41 17 3 0 0 0 0.035084 4 11019 10982;11019;11038;11042 76.825 60.55 1 4450800 16950 2774 11101 11104 17031;17032;17033;17034 17032 0.0304977479796662 GLSETILAV 9 Unmodified _GLSETILAV_ 0 0 0 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 452.7669677734375 2 451.7633 901.512048 0.044461 2.0086E-05 0.095281 4.3044E-05 0.13974 6.313E-05 451.76325357570937 156.6 0.88513 151.81 151.42 152.31 -4.7885 58 24 3 0 0 0 0.069289 1 31114 31114 42.232 33.319 1 7398200 16951 2750 11102 11105 17035 17035 0.057352493203779886 GLSETILAV 9 Unmodified _GLSETILAV_ 0 0 0 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 451.7633 901.512048 0.24634 0.00011129 -0.11691 -5.2817E-05 0.12943 5.8472E-05 451.7631956008804 151.92 0.82678 151.92 151.51 152.34 0 -0.025396 -6.5061E-05 NaN 42.232 42 22 2 NaN NaN NaN NaN 0 NaN NaN 0 7831100 16952 2750 11102 11105 0.057352493203779886 GLSETILAV 9 Unmodified _GLSETILAV_ 0 0 0 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 451.7633 901.512048 0.11936 5.3925E-05 0.030237 1.366E-05 0.1496 6.7585E-05 451.76324882220905 157.36 0.80579 152.07 151.62 152.43 -5.2854 0.12857 6.7893E-05 NaN 42.232 57 22 3 NaN NaN NaN NaN 0 NaN NaN 0 6557100 16953 2750 11102 11105 0.057352493203779886 GLSETILAV 9 Unmodified _GLSETILAV_ 0 0 0 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 451.7633 901.512048 0.36019 0.00016272 -0.23392 -0.00010568 0.12628 5.7047E-05 451.7631542302699 157.25 0.88159 151.98 151.55 152.43 -5.2712 0.032964 -0.00017078 NaN 42.232 59 24 3 NaN NaN NaN NaN 0 NaN NaN 0 7618100 16954 2750 11102 11105 0.057352493203779886 GLSGLEAGES 10 Unmodified _GLSGLEAGES_ 0 0 0 REV__ENST00000322002.4_1_2:5834175-5834352:+|nuORF REV__ENST00000322002.4_1_2:5834175-5834352:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24664306640625 2 460.221997 918.429441 0.15635 7.1954E-05 -0.13847 -6.3726E-05 0.017878 8.2279E-06 460.22196596726036 17.461 0.27981 17.461 17.345 17.625 0 12 7 2 0 0 0 0.83242 1 2755 2755 10.074 0 1 636310 + 16955 20555 11103 11106 17036 17036 -0.03303692478425546 GLSGLEAGES 10 Unmodified _GLSGLEAGES_ 0 0 0 REV__ENST00000322002.4_1_2:5834175-5834352:+|nuORF REV__ENST00000322002.4_1_2:5834175-5834352:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.221997 918.429441 -0.12856 -5.9166E-05 0.30237 0.00013916 0.17381 7.9992E-05 460.22203621375866 18.538 0.24415 17.227 17.037 17.282 -1.3109 -0.0025148 -7.8585E-05 NaN 10.074 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 423570 + 16956 20555 11103 11106 -0.03303692478425546 GLSGLEAGES 10 Unmodified _GLSGLEAGES_ 0 0 0 REV__ENST00000322002.4_1_2:5834175-5834352:+|nuORF REV__ENST00000322002.4_1_2:5834175-5834352:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.221997 918.429441 -0.42536 -0.00019576 0.61815 0.00028449 0.19279 8.8727E-05 460.22228553497234 18.432 0.20876 17.147 17.052 17.261 -1.2857 -0.083108 0.00021207 NaN 10.074 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 436660 + 16957 20555 11103 11106 -0.03303692478425546 GLSGLEAGES 10 Unmodified _GLSGLEAGES_ 0 0 0 REV__ENST00000322002.4_1_2:5834175-5834352:+|nuORF REV__ENST00000322002.4_1_2:5834175-5834352:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 460.221997 918.429441 -1.1432 -0.00052612 1.2659 0.00058258 0.12267 5.6457E-05 460.2224717987649 18.599 0.24792 17.084 16.95 17.198 -1.5148 -0.14555 0.00080825 NaN 10.074 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 289280 + 16958 20555 11103 11106 -0.03303692478425546 GLSGSSVSLV 10 Unmodified _GLSGSSVSLV_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7520446777344 2 453.250557 904.486562 0.095779 4.3412E-05 -0.11193 -5.0732E-05 -0.016149 -7.3195E-06 453.25044540167755 56.036 0.60246 56.036 55.656 56.258 0 40 16 3 0 0 0 0.35262 1 10657 10657 5.8681 0 1 5653400 + 16959 17662 11104 11107 17037 17037 0.0304977479796662 GLSIQEWELRE 11 Unmodified _GLSIQEWELRE_ 0 0 0 ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1 ENST00000561220.6_1_15:45434150-45457096:+|nuORF ENST00000561220.6_1_15:45434150-45457096:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75201416015625 3 453.90162 1358.68303 -0.13217 -5.9994E-05 0.0959 4.3529E-05 -0.036275 -1.6465E-05 453.90170679326883 47.171 0.62605 44.221 43.876 44.502 -2.9499 42 17 3 0 0 0 0.60781 1 8625 8625 5.4027 1.5264 1 3064500 16960 4122 11105 11108 17038 17038 0.018035349010233404 GLSLALTETA 10 Unmodified _GLSLALTETA_ 0 0 0 REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.267333984375 2 488.27149 974.528426 0.11581 5.6547E-05 0.30907 0.00015091 0.42488 0.00020746 488.27142546404986 86.903 0.79655 86.903 86.458 87.255 0 77 22 5 0 0 0 0.664 2 16943 16943;16948 14.838 1.7958 1 8047800 + 16961 20693 11106 11109 17039;17040 17039 0.04014330486484141 GLSLALTETA 10 Unmodified _GLSLALTETA_ 0 0 0 REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2766418457031 2 488.27149 974.528426 -0.093557 -4.5681E-05 0.30648 0.00014965 0.21293 0.00010397 488.27153642458717 90.486 0.79846 86.708 86.329 87.127 -3.7779 87 22 5 0 0 0 0.57735 1 17363 17363 20.454 4.6064 1 7970000 + 16962 20693 11106 11109 17041 17041 0.04014330486484141 GLSLQWLY 8 Unmodified _GLSLQWLY_ 0 0 0 ENSG00000072274|ENST00000360110|TFRC;TFRC|p.R646H|1|0.23|ENSG00000072274|chr3:196053521-196053521|C/T|missense_variant ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2642517089844 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 55.811 1 52.635 52.135 53.135 -3.1761 0 0 0 0.21486 1 10370 10370 11.114 0.29054 1 16963 1462 11107 11110 17042 17042 0.027349729028514957 GLSLVQERNY 10 Unmodified _GLSLVQERNY_ 0 0 0 ENST00000412276.5_1_2:188411563-188412249:+|nuORF ENST00000412276.5_1_2:188411563-188412249:+|nuORF ENST00000412276.5_1_2:188411563-188412249:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2760620117188 2 589.811845 1177.60914 0.31219 0.00018413 -0.26905 -0.00015869 0.043138 2.5444E-05 589.8117017472613 50.279 0.67106 47.397 47.079 47.75 -2.8811 46 18 4 0 0 0 0.91149 1 9471 9471 3.5965 0 1 6229600 16964 9584 11108 11111 17043 17043 0.027436115293767216 GLSPLWEN 8 Unmodified _GLSPLWEN_ 0 0 0 REV__ENSG00000139220|ENST00000549396|PPFIA2;REV__ENST00000532504.5_1_11:70185286-70228249:+|nuORF REV__ENSG00000139220|ENST00000549396|PPFIA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2309265136719 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 124.71 1 120.11 119.61 120.61 -4.5984 0 0 0 0.23366 1 24593 24593 0.0082765 0 1 + 16965 16510;16083 11109 11112 17044 17044 -0.01086477027968158 GLSPSDTSVP 10 Unmodified _GLSPSDTSVP_ 0 0 0 REV__MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant REV__MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.240966796875 2 480.237647 958.460741 0.049007 2.3535E-05 -0.21044 -0.00010106 -0.16143 -7.7526E-05 480.23748436399586 49.778 0.88978 46.779 46.413 47.303 -2.999 73 25 4 0 0 0 0.55366 1 9170 9170 21.747 3.6003 1 12542000 + 16966 17447 11110 11113 17045 17045 -0.020151194443201348 GLSPSIQTL 9 Unmodified _GLSPSIQTL_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23895263671875 2 458.260925 914.507297 0.47702 0.0002186 0.091567 4.1962E-05 0.56859 0.00026056 458.2607053845768 122.28 0.51189 117.59 117.34 117.85 -4.6873 26 14 3 0 0 0 0.023387 1 23472 23472 88.904 26.331 1 1123100 16967 4814 11111 11114 17046 17046 0.04662365177614447 GLSPSIQTL 9 Unmodified _GLSPSIQTL_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.260925 914.507297 0.24933 0.00011426 -0.084067 -3.8525E-05 0.16527 7.5736E-05 458.26091570325457 117.42 0.52493 117.42 117.2 117.72 0 -0.11823 -2.5058E-05 NaN 88.904 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 971950 16968 4814 11111 11114 0.04662365177614447 GLSPSIQTL 9 Unmodified _GLSPSIQTL_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.260925 914.507297 0.12743 5.8395E-05 -0.12806 -5.8683E-05 -0.00062702 -2.8734E-07 458.26087736008634 122.13 0.53416 117.58 117.24 117.78 -4.5476 0.045384 -6.5375E-05 NaN 88.904 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1367500 16969 4814 11111 11114 0.04662365177614447 GLSPSIQTL 9 Unmodified _GLSPSIQTL_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 458.260925 914.507297 0.31167 0.00014282 -0.087098 -3.9914E-05 0.22457 0.00010291 458.26082322508523 122.08 0.53571 117.55 117.26 117.8 -4.5305 0.018151 -2.7836E-05 NaN 88.904 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1177600 16970 4814 11111 11114 0.04662365177614447 GLSQVAVTV 9 Unmodified _GLSQVAVTV_ 0 0 0 ENST00000438796.6_1_3:197607619-197610534:+|nuORF;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3 ENST00000438796.6_1_3:197607619-197610534:+|nuORF ENST00000438796.6_1_3:197607619-197610534:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.216552734375 2 437.255643 872.496732 0.45132 0.00019734 -0.67273 -0.00029416 -0.22141 -9.6812E-05 437.25526776457025 105.03 0.59332 105.03 104.72 105.32 0 24 16 2 0 0 0 0.067773 2 20622 20622;20688 65.235 0 1 1101600 16971 7028 11112 11115 17047;17048 17047 0.05538382523184282 GLSQVAVTV 9 Unmodified _GLSQVAVTV_ 0 0 0 ENST00000438796.6_1_3:197607619-197610534:+|nuORF;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3 ENST00000438796.6_1_3:197607619-197610534:+|nuORF ENST00000438796.6_1_3:197607619-197610534:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21612548828125 2 437.255643 872.496732 0.4853 0.0002122 -0.65001 -0.00028422 -0.1647 -7.2018E-05 437.2552102740349 109.12 0.80854 104.94 104.63 105.44 -4.1826 32 22 2 0 0 0 0.23492 1 21010 21010 45.7 9.5726 1 1373600 16972 7028 11112 11115 17049 17049 0.05538382523184282 GLSREHRTM 9 Unmodified _GLSREHRTM_ 0 0 0 REV__PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant REV__PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77783203125 2 543.777282 1085.54001 NaN NaN NaN NaN NaN NaN NaN 170.45 1 170.45 169.95 170.95 0 0 0 0 0.23508 1 35045 35045 9.3831 0 1 + 16973 19492 11113 11116 17050 17050 0.0006624902880503214 GLSREHRTM 9 Unmodified _GLSREHRTM_ 0 0 0 REV__PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant REV__PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7797241210938 2 543.777282 1085.54001 NaN NaN NaN NaN NaN NaN NaN 169.64 1 164.85 164.35 165.35 -4.7898 0 0 0 0.19687 1 34378 34378 1.2148 0.80657 1 + 16974 19492 11113 11116 17051 17051 0.0006624902880503214 GLSREHRTM 9 Unmodified _GLSREHRTM_ 0 0 0 REV__PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant REV__PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.778564453125 2 543.777282 1085.54001 NaN NaN NaN NaN NaN NaN NaN 172.8 1 168.01 167.51 168.51 -4.7898 0 0 0 0.19684 1 35221 35221 0.029283 0.027901 1 + 16975 19492 11113 11116 17052 17052 0.0006624902880503214 GLSSEHHLSK 10 Unmodified _GLSSEHHLSK_ 0 0 0 HOMER1|p.F90L|1|0.11|ENSG00000152413|chr5:79451014-79451014|G/T|missense_variant HOMER1|p.F90L|1|0.11|ENSG00000152413|chr5:79451014-79451014|G/T|missense_variant HOMER1|p.F90L|1|0.11|ENSG00000152413|chr5:79451014-79451014|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7830810546875 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 155.51 1 150.73 150.23 151.23 -4.7791 0 0 0 0.22535 1 30912 30912 20.454 4.6064 1 16976 11913 11114 11117 17053 17053 0.008587693238041538 GLSSILDAW 9 Unmodified _GLSSILDAW_ 0 0 0 REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2549743652344 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 139.35 1 134.51 134.01 135.01 -4.8492 0 0 0 0.1124 1 26863 26863 36.044 7.5574 1 + 16977 16659 11115 11118 17054 17054 0.009820786605587273 GLSSLVSVS 9 Unmodified _GLSSLVSVS_ 0 0 0 REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1 REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24908447265625 2 424.739825 847.465098 0.097198 4.1284E-05 0.1375 5.8401E-05 0.2347 9.9685E-05 424.73984715162476 129.49 0.82396 129.49 129.06 129.88 0 50 23 3 0 0 0 0.026587 1 25599 25599 85.357 10.934 1 9338400 + 16978 19561 11116 11119 17055 17055 0.03526389769240268 GLSSNKIPV 9 Unmodified _GLSSNKIPV_ 0 0 0 PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant;nc|ENSG00000153246|Q13018-2|PLA2R1;ENSG00000153246|ENST00000283243|PLA2R1;PLA2R1|p.L497Pfs*6|1|0.07|ENSG00000153246|chr2:160016675-160016676|-/G|frameshift_variant;PLA2R1|p.A504Qfs*47|1|0.35|ENSG00000153246|chr2:160016656-160016656|T/-|frameshift_variant PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22283935546875 2 457.768917 913.523281 0.26234 0.00012009 0.32956 0.00015086 0.5919 0.00027095 457.7690116435979 91.384 0.6128 87.29 86.917 87.53 -4.0946 22 17 2 0 0 0 0.38188 1 17370 17370 26.884 0.61551 1 838690 16979 4964 11117 11120 17056 17056 0.06306071414519465 GLSTEGIYRV 10 Unmodified _GLSTEGIYRV_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7703857421875 2 547.795663 1093.57677 0.29131 0.00015958 -0.13889 -7.6084E-05 0.15242 8.3494E-05 547.7955413746981 96.579 0.79708 96.579 96.182 96.979 0 79 22 4 0 0 0 0.001747 3 18961 18961;18970;18973 114.2 66.678 1 58354000 16980 5226 11118 11121 17057;17058;17059 17057 0.03372824126358864 GLSTEGIYRV 10 Unmodified _GLSTEGIYRV_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7842407226562 2 547.795663 1093.57677 0.21178 0.00011601 0.091973 5.0382E-05 0.30375 0.00016639 547.7956728262839 100.64 0.86332 96.477 96.046 96.91 -4.1594 84 24 4 0 0 0 7.1121E-05 1 19757 19757 133.05 40.399 1 84055000 16981 5226 11118 11121 17060 17060 0.03372824126358864 GLSTEGIYRV 10 Unmodified _GLSTEGIYRV_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7713012695312 2 547.795663 1093.57677 0.31432 0.00017219 0.0094972 5.2025E-06 0.32382 0.00017739 547.7956057442141 100.77 0.92449 96.47 96.055 96.98 -4.297 93 26 5 0 0 0 0.14103 1 19345 19345 49.554 26.818 1 75138000 16982 5226 11118 11121 17061 17061 0.03372824126358864 GLSTEGIYRV 10 Unmodified _GLSTEGIYRV_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7714233398438 2 547.795663 1093.57677 0.39594 0.0002169 -0.082823 -4.537E-05 0.31312 0.00017153 547.7956081628374 100.45 0.98914 96.463 96.004 96.993 -3.9895 100 28 5 0 0 0 0.4708 1 19390 19390 26.268 11.02 1 85554000 16983 5226 11118 11121 17062 17062 0.03372824126358864 GLSVFVESPRL 11 Unmodified _GLSVFVESPRL_ 0 0 0 REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|53|2|anti-sense REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|53|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2919311523438 2 602.340238 1202.66592 NaN NaN NaN NaN NaN NaN NaN 153.09 1 153.09 152.59 153.59 0 0 0 0 0.22501 1 30668 30668 12.241 0.74595 1 + 16984 24755 11119 11122 17063 17063 0.07269659085909552 GLSVLRSFRLL 11 Unmodified _GLSVLRSFRLL_ 0 0 0 ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000136531|Q99250-2|SCN2A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;ENSG00000144285|ENST00000674923|SCN1A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000144285|P35498-2|SCN1A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;nc|ENSG00000169432|Q15858-3|SCN9A;SCN9A|p.T1946Nfs*14|1|0.31|ENSG00000169432|chr2:166198802-166198803|-/T|frameshift_variant;nc|ENSG00000196876|Q9UQD0-5|SCN8A;SCN9A|p.V1720Sfs*8|1|0.13|ENSG00000169432|chr2:166199481-166199482|-/T|frameshift_variant;SCN4A|p.D1309Tfs*4|1|0.19|ENSG00000007314|chr17:63943842-63943842|C/-|frameshift_variant;nc|ENSG00000196876|Q9UQD0-4|SCN8A;SCN1A|p.N1126Kfs*8|1|0.17|ENSG00000144285|chr2:166036099-166036100|-/T|frameshift_variant;SCN4A|p.E974Rfs*5|1|0.4|ENSG00000007314|chr17:63949462-63949463|-/G|frameshift_variant;SCN1A|p.G913Wfs*2|1|0.25|ENSG00000144285|chr2:166037985-166037986|-/A|frameshift_variant;SCN3A|p.N1922Ifs*19|1|0.09|ENSG00000153253|chr2:165090388-165090388|T/-|frameshift_variant;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant;SCN3A|p.T1958Qfs*16|1|0.28|ENSG00000153253|chr2:165090281-165090281|T/-|frameshift_variant;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000144285|P35498-3|SCN1A ENSG00000136531|ENST00000375437|SCN2A;SCN3A|p.N1922Ifs*19|1|0.09|ENSG00000153253|chr2:165090388-165090388|T/-|frameshift_variant;ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000144285|P35498-3|SCN1A ENSG00000136531|ENST00000375437|SCN2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7761840820312 2 630.892972 1259.77139 1.0959 0.00069137 -0.82762 -0.00052214 0.26824 0.00016923 631.39424679056 156.11 0.17273 151.33 151.26 151.43 -4.7791 5 4 2 0 0 0 0.91954 1 31045 31045 13.906 1.6654 1 803960 16985 4017;4965;1021;12364 11120 11123 17064 17064 0.151896200021838 GLSYETAENP 10 Unmodified _GLSYETAENP_ 0 0 0 ENSG00000139970|ENST00000267484|RTN1;ENST00000432103.6_1_14:60063465-60194426:-|nuORF ENSG00000139970|ENST00000267484|RTN1 ENSG00000139970|ENST00000267484|RTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2769165039062 2 540.745836 1079.47712 0.47466 0.00025667 0.7623 0.00041221 1.237 0.00066888 540.7457957283737 33.729 0.83914 31.513 31.216 32.055 -2.2158 47 23 3 0 0 0 0.12336 1 5890 5890 53.833 11.877 1 3092500 16986 4272 11121 11124 17065 17065 -0.05944038278221342 GLSYETAENP 10 Unmodified _GLSYETAENP_ 0 0 0 ENSG00000139970|ENST00000267484|RTN1;ENST00000432103.6_1_14:60063465-60194426:-|nuORF ENSG00000139970|ENST00000267484|RTN1 ENSG00000139970|ENST00000267484|RTN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.745836 1079.47712 0.15159 8.1974E-05 1.3523 0.00073125 1.5039 0.00081323 540.7459859030636 33.729 0.76629 31.412 31.182 31.949 -2.3175 -0.021437 0.0011035 NaN 53.833 42 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3897500 16987 4272 11121 11124 -0.05944038278221342 GLTEKTVLV 9 Unmodified _GLTEKTVLV_ 0 0 0 ENSG00000090889|ENST00000374403|KIF4A;nc|ENSG00000090889|O95239-2|KIF4A;KIF4A|p.D669Rfs*13|1|0.06|ENSG00000090889|chrX:70376174-70376175|-/A|frameshift_variant;ENSG00000226650|ENST00000435029|KIF4B ENSG00000090889|ENST00000374403|KIF4A;ENSG00000226650|ENST00000435029|KIF4B ENSG00000090889|ENST00000374403|KIF4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2373352050781 2 480.292225 958.569897 -0.11504 -5.5254E-05 0.29599 0.00014216 0.18095 8.6907E-05 480.29231263130293 87.662 0.76243 87.662 87.362 88.125 0 40 21 3 0 0 0 0.15889 2 17105 17105;17136 34.674 17.055 1 4576200 16988 1794;7792 11122 11125 17066;17067 17066 0.0889551124580521 GLTGYAYNP 9 Unmodified _GLTGYAYNP_ 0 0 0 REV__nc|ENSG00000077800|O75344-3|FKBP6 REV__nc|ENSG00000077800|O75344-3|FKBP6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7232360839844 2 478.229625 954.444697 0.22203 0.00010618 -0.23819 -0.00011391 -0.01616 -7.7284E-06 478.22921065889085 77.288 0.72803 77.288 76.839 77.567 0 30 20 2 0 0 0 0.77732 1 14962 14962 12.532 7.7755 1 1577400 + 16989 14370 11123 11126 17068 17068 -0.034347808905749844 GLTGYIKGI 9 Unmodified _GLTGYIKGI_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5254821777344 2 461.273835 920.533118 0.19791 9.1288E-05 0.077165 3.5594E-05 0.27507 0.00012688 461.2737649576817 121.88 0.62076 121.88 121.51 122.13 0 29 17 2 0 0 0 0.57447 1 24074 24074 14.838 2.3067 1 1492400 16990 5857 11124 11127 17069 17069 0.06967259419923266 GLTGYIKGI 9 Unmodified _GLTGYIKGI_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.52825927734375 2 461.273835 920.533118 0.036684 1.6921E-05 0.11905 5.4914E-05 0.15573 7.1835E-05 461.27382334957906 125.9 0.6685 121.3 121.05 121.71 -4.5984 32 18 2 0 0 0 0.10573 1 24866 24866 53.833 11.738 1 1877600 16991 5857 11124 11127 17070 17070 0.06967259419923266 GLTGYIKGI 9 Unmodified _GLTGYIKGI_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.273835 920.533118 0.23369 0.0001078 -0.025094 -1.1575E-05 0.2086 9.6221E-05 461.2737791184319 126.33 0.66339 121.53 121.08 121.74 -4.7958 0.081814 -0.00014643 NaN 53.833 32 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1908900 16992 5857 11124 11127 0.06967259419923266 GLTGYIKGI 9 Unmodified _GLTGYIKGI_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.273835 920.533118 0.19303 8.904E-05 0.32436 0.00014962 0.51739 0.00023866 461.273967564977 126.17 0.6179 121.52 121.26 121.88 -4.6495 0.07028 0.00017596 NaN 53.833 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1666400 16993 5857 11124 11127 0.06967259419923266 GLTISHKTT 9 Unmodified _GLTISHKTT_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73760986328125 2 479.271824 956.529095 0.089775 4.3027E-05 -0.15772 -7.5593E-05 -0.067949 -3.2566E-05 479.2717351819764 59.942 0.34974 56.628 56.381 56.731 -3.3139 15 9 2 0 0 0 0.74655 1 11148 11148 21.747 11.673 1 879870 + 16994 17221 11125 11128 17071 17071 0.04909169926179402 GLTISHKTT 9 Unmodified _GLTISHKTT_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73779296875 2 479.271824 956.529095 0.11692 5.6037E-05 0.33527 0.00016068 0.45219 0.00021672 479.2719950056578 59.856 0.42357 56.632 56.395 56.818 -3.2237 17 11 2 0 0 0 0.74655 1 11209 11209 21.747 11.673 1 782590 + 16995 17221 11125 11128 17072 17072 0.04909169926179402 GLTKKRTK 8 Unmodified _GLTKKRTK_ 0 0 0 ENSG00000105373|ENST00000246802|NOP53;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF ENSG00000105373|ENST00000246802|NOP53 ENSG00000105373|ENST00000246802|NOP53 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2065734863281 3 311.206426 930.597449 NaN NaN NaN NaN NaN NaN NaN 63.124 1 63.124 62.624 63.624 0 0 0 0 0.21486 1 12132 12132 0.45834 0 1 16996 2302 11126 11129 17073 17073 0.1293745929671104 GLTLQNSQWM 10 Unmodified _GLTLQNSQWM_ 0 0 0 CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;ENSG00000016490|ENST00000394711|CLCA1 CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.29034423828125 3 393.193858 1176.55974 -0.18271 -7.1841E-05 -0.43315 -0.00017031 -0.61586 -0.00024215 393.19378277676884 14.367 0.10699 14.367 14.279 14.386 0 4 2 2 0 0 0 0.91149 1 2125 2125 0.13989 0 1 974380 16997 566 11127 11130 17074 17074 -0.021474197510769955 GLTQQEKL 8 Unmodified _GLTQQEKL_ 0 0 0 REV__nc|ENSG00000177683|Q7Z6K1-2|THAP5 REV__nc|ENSG00000177683|Q7Z6K1-2|THAP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2236022949219 2 458.758549 915.502546 -0.30247 -0.00013876 0.55239 0.00025342 0.24993 0.00011466 458.7588162717156 40.947 0.38857 38.312 38.113 38.502 -2.6348 16 10 2 0 0 0 0.41341 1 7607 7607 50.855 33.913 1 953660 + 16998 18571 11128 11131 17075 17075 0.04141481034866956 GLTRSTSK 8 Unmodified _GLTRSTSK_ 0 0 0 ENST00000542055.5_1_12:7507707-7510097:-|nuORF;ENST00000416109.2_1_12:7507704-7520763:-|nuORF ENST00000542055.5_1_12:7507707-7510097:-|nuORF ENST00000542055.5_1_12:7507707-7510097:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2431945800781 2 425.243067 848.47158 0.69818 0.00029689 0.0051628 2.1955E-06 0.70334 0.00029909 425.2429884978199 27.944 0.45685 25.988 25.803 26.26 -1.9561 21 12 2 0 0 0 8448 1 4963 4963 3.2813 0 1 1798500 16999 9619 11129 11132 17076 17076 0.04128327720627567 GLTTGTHEV 9 Unmodified _GLTTGTHEV_ 0 0 0 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant;NAV3|p.L1995Sfs*5|1|0.05|ENSG00000067798|chr12:78188704-78188705|-/T|frameshift_variant;NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2232971191406 2 457.732532 913.45051 -0.45654 -0.00020897 -0.55017 -0.00025183 -1.0067 -0.0004608 457.7327755953092 35.745 0.31861 33.351 33.238 33.557 -2.3938 13 8 2 0 0 0 0.46541 1 6578 6578 21.747 3.6003 1 669100 17000 1393 11130 11133 17077 17077 -0.009676823788936417 GLTTGTHEV 9 Unmodified _GLTTGTHEV_ 0 0 0 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant;NAV3|p.L1995Sfs*5|1|0.05|ENSG00000067798|chr12:78188704-78188705|-/T|frameshift_variant;NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2240905761719 2 457.732532 913.45051 0.096379 4.4116E-05 -0.098984 -4.5308E-05 -0.0026055 -1.1926E-06 457.73253498658715 35.669 0.16779 33.417 33.333 33.501 -2.2527 8 4 2 0 0 0 0.40602 1 6288 6288 25.399 8.2864 1 849330 17001 1393 11130 11133 17078 17078 -0.009676823788936417 GLTWLMEDT 9 Unmodified _GLTWLMEDT_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;PLCG1|p.L868*|1|0.36|ENSG00000124181|chr20:41169474-41169474|C/-|frameshift_variant nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2716064453125 2 533.2497 1064.48485 0.091914 4.9013E-05 0.096459 5.1437E-05 0.18837 0.00010045 533.2496275210447 136.58 0.73849 131.94 131.64 132.38 -4.6399 45 20 3 0 0 0 0.8319 1 26891 26891 12.532 8.5872 1 4748300 17002 3296 11131 11134 17079 17079 -0.04481602282316999 GLVDKLQAL 9 Unmodified _GLVDKLQAL_ 0 0 0 ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1 ENST00000566284.1_1_16:57467902-57474840:-|nuORF ENST00000566284.1_1_16:57467902-57474840:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72430419921875 2 478.792392 955.570232 -0.068531 -3.2812E-05 0.17465 8.3623E-05 0.10612 5.081E-05 478.7924824273749 129.69 0.58823 129.69 129.4 129.99 0 21 16 2 0 0 0 0.0087568 1 25623 25623 107.19 7.3881 1 1842500 17003 987 11132 11135 17080 17080 0.0906693096563913 GLVDKLQAL 9 Unmodified _GLVDKLQAL_ 0 0 0 ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1 ENST00000566284.1_1_16:57467902-57474840:-|nuORF ENST00000566284.1_1_16:57467902-57474840:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72998046875 2 478.792392 955.570232 0.20349 9.7431E-05 -0.30469 -0.00014588 -0.1012 -4.8452E-05 478.79212270301804 134.27 0.59402 129.45 129.06 129.65 -4.8175 25 16 2 0 0 0 0.36931 1 25808 25808 27.629 1.3607 1 1379400 17004 987 11132 11135 17081 17081 0.0906693096563913 GLVDKLQAL 9 Unmodified _GLVDKLQAL_ 0 0 0 ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1 ENST00000566284.1_1_16:57467902-57474840:-|nuORF ENST00000566284.1_1_16:57467902-57474840:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.792392 955.570232 0.0064077 3.0679E-06 0.10901 5.2194E-05 0.11542 5.5262E-05 478.7923608740349 133.94 0.53523 129.3 128.96 129.49 -4.6399 -0.13288 1.1624E-05 NaN 107.19 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2607000 17005 987 11132 11135 0.0906693096563913 GLVDKLQAL 9 Unmodified _GLVDKLQAL_ 0 0 0 ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1 ENST00000566284.1_1_16:57467902-57474840:-|nuORF ENST00000566284.1_1_16:57467902-57474840:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.792392 955.570232 0.045719 2.189E-05 0.15967 7.6449E-05 0.20539 9.8339E-05 478.7924117058494 134.17 0.52089 129.3 129.09 129.61 -4.8726 -0.13726 6.0133E-05 NaN 107.19 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2286000 17006 987 11132 11135 0.0906693096563913 GLVDPEVHGR 10 Unmodified _GLVDPEVHGR_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2018737792969 3 360.192845 1077.55671 NaN NaN NaN NaN NaN NaN NaN 46.599 1 46.599 46.099 47.099 0 0 0 0 0.22588 1 8780 8780 5.7834 0.73591 1 17007 1877 11133 11136 17082 17082 0.02103073186435722 GLVDTITSKF 10 Unmodified _GLVDTITSKF_ 0 0 0 nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY nc|ENSG00000174611|Q8NBH2-3|KY nc|ENSG00000174611|Q8NBH2-3|KY MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2674560546875 2 540.800414 1079.58628 0.16664 9.0118E-05 -0.77435 -0.00041877 -0.60771 -0.00032865 540.8001751054566 92.725 0.54162 88.901 88.636 89.177 -3.8243 24 15 3 0 0 0 0.66352 1 17733 17733 32.305 11.852 1 2268300 17008 6360 11134 11137 17083 17083 0.04966592411892634 GLVEEQPSG 9 Unmodified _GLVEEQPSG_ 0 0 0 REV__ENST00000463820.5_1_4:1985048-1993691:-|nuORF REV__ENST00000463820.5_1_4:1985048-1993691:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2249755859375 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 68.582 1 65.403 64.903 65.903 -3.1796 0 0 0 0.23508 1 13323 13323 12.532 1.4171 1 + 17009 21927 11135 11138 17084 17084 -0.0261138861579866 GLVGSLQEV 9 Unmodified _GLVGSLQEV_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 451.7646484375 2 451.2531 900.491647 0.23041 0.00010397 -0.040824 -1.8422E-05 0.18959 8.5552E-05 451.25303023262614 118.93 0.76608 118.93 118.57 119.34 0 52 21 3 0 0 0 0.0038422 1 23392 23392 89.193 35.125 1 10337000 17010 4957 11136 11139 17085 17085 0.03742078660570769 GLVGSLQEV 9 Unmodified _GLVGSLQEV_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 451.2531 900.491647 0.077041 3.4765E-05 0.010713 4.8343E-06 0.087754 3.9599E-05 451.2530270459881 123.44 0.85236 118.87 118.45 119.31 -4.5757 -0.059631 5.5359E-05 NaN 89.193 58 23 3 NaN NaN NaN NaN 0 NaN NaN 0 14316000 17011 4957 11136 11139 0.03742078660570769 GLVGSLQEV 9 Unmodified _GLVGSLQEV_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 451.2531 900.491647 0.39058 0.00017625 -0.23396 -0.00010557 0.15662 7.0676E-05 451.2529314478035 123.72 0.78703 118.99 118.57 119.36 -4.731 0.057724 -0.00016546 NaN 89.193 64 21 4 NaN NaN NaN NaN 0 NaN NaN 0 12592000 17012 4957 11136 11139 0.03742078660570769 GLVGSLQEV 9 Unmodified _GLVGSLQEV_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 451.2531 900.491647 0.21192 9.5631E-05 0.027802 1.2546E-05 0.23973 0.00010818 451.2530354371815 123.52 1.0332 118.93 118.55 119.58 -4.5926 -0.0019981 7.0782E-05 NaN 89.193 68 29 3 NaN NaN NaN NaN 0 NaN NaN 0 13624000 17013 4957 11136 11139 0.03742078660570769 GLVHKVLLGIC 11 Unmodified _GLVHKVLLGIC_ 0 0 0 REV__ENST00000511475.5_1_5:130495096-130495213:-|nuORF REV__ENST00000511475.5_1_5:130495096-130495213:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.335693359375 2 576.352094 1150.68964 NaN NaN NaN NaN NaN NaN NaN 131.74 1 126.94 126.44 127.44 -4.799 0 0 0 0.23594 1 25361 25361 3.5965 0.31518 1 + 17014 22551 11137 11140 17086 17086 0.12031801318744328 GLVIKTGEV 9 Unmodified _GLVIKTGEV_ 0 0 0 REV__nc|ENSG00000147133|P21675-23|TAF1 REV__nc|ENSG00000147133|P21675-23|TAF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2396240234375 2 458.279118 914.543683 NaN NaN NaN NaN NaN NaN NaN 113.07 1 108.62 108.12 109.12 -4.4539 0 0 0 0.23508 1 22278 22278 11.64 0.81637 1 + 17015 16921 11138 11141 17087 17087 0.08299242074326685 GLVILLIFR 9 Unmodified _GLVILLIFR_ 0 0 0 nc|ENSG00000211798|A0A075B6X5|TRAV18 nc|ENSG00000211798|A0A075B6X5|TRAV18 nc|ENSG00000211798|A0A075B6X5|TRAV18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2789916992188 2 522.35242 1042.69029 NaN NaN NaN NaN NaN NaN NaN 128.67 1 123.85 123.35 124.35 -4.817 0 0 0 0.23508 1 24698 24698 2.0598 0 1 17016 12579 11139 11142 17088 17088 0.17064964030078045 GLVKKKLKP 9 Unmodified _GLVKKKLKP_ 0 0 0 REV__ENST00000447107.1_1_14:64821486-64821564:-|nuORF REV__ENST00000447107.1_1_14:64821486-64821564:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 505.7865295410156 2 505.85787 1009.70119 NaN NaN NaN NaN NaN NaN NaN 143.08 1 143.08 142.58 143.58 0 0 0 0 0.19622 1 28542 28542 0.96228 0.96228 1 + 17017 21766 11140 11143 17089 17089 0.19672366404358854 GLVTPPWPL 9 Unmodified _GLVTPPWPL_ 0 0 0 REV__AluSg_dup14868|chr7:101199001-101199301:-|1.043937374381135|0.291097903465529|1.84|470.0|18|2|anti-sense REV__AluSg_dup14868|chr7:101199001-101199301:-|1.043937374381135|0.291097903465529|1.84|470.0|18|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640380859375 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 79.211 1 75.406 74.906 75.906 -3.8048 0 0 0 0.23411 1 15026 15026 13.508 0.97634 1 + 17018 13023 11141 11144 17090 17090 0.06371849799552365 GLVVWVCFG 9 Unmodified _GLVVWVCFG_ 0 0 0 REV__ENSG00000139540|ENST00000454355|SLC39A5 REV__ENSG00000139540|ENST00000454355|SLC39A5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25848388671875 2 490.257131 978.499709 NaN NaN NaN NaN NaN NaN NaN 167.29 1 162.34 161.84 162.84 -4.948 0 0 0 0.23508 1 32892 32892 9.3474 1.4373 1 + 17019 16524 11142 11145 17091 17091 0.00959934376351157 GLWFFMPAP 9 Unmodified _GLWFFMPAP_ 0 0 0 REV__ENST00000331134.10_1_17:79525845-79526181:-|nuORF REV__ENST00000331134.10_1_17:79525845-79526181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2646484375 2 533.264956 1064.51536 NaN NaN NaN NaN NaN NaN NaN 53.319 1 50.223 49.723 50.723 -3.0954 0 0 0 0.23048 1 9853 9853 14.582 3.7578 1 + 17020 20610 11143 11146 17092 17092 -0.014317791066105201 GLWLTRRLH 9 Unmodified _GLWLTRRLH_ 0 0 0 ENST00000511685.5_2_4:183603156-183609376:+|nuORF ENST00000511685.5_2_4:183603156-183609376:+|nuORF ENST00000511685.5_2_4:183603156-183609376:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3179321289062 2 576.343449 1150.67235 NaN NaN NaN NaN NaN NaN NaN 113.8 1 109.24 108.74 109.74 -4.555 0 0 0 0.19634 1 21845 21845 0.073264 0 1 17021 10750 11144 11147 17093 17093 0.10303641827931642 GLWSRWKI 8 Unmodified _GLWSRWKI_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1;MRC1|p.Q384Lfs*12|1|0.03|ENSG00000260314|chr10:17849663-17849664|-/TTTAAAAGATTTGATTAAAA|frameshift_variant;nc|ENSG00000260314|P22897-2|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6886596679688 2 523.300719 1044.58688 0.49 0.00025642 3.7033 0.0019379 4.1933 0.0021944 523.3031789898546 159.73 0.10341 154.47 154.39 154.5 -5.2576 4 2 2 0 0 0 0.88646 1 30986 30986 3.5871 0 1 948620 17022 7954 11145 11148 17094 17094 0.06637476642254114 GLYAKWLVE 9 Unmodified _GLYAKWLVE_ 0 0 0 ENST00000529977.5_1_11:9164913-9166651:-|nuORF;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A ENST00000529977.5_1_11:9164913-9166651:-|nuORF ENST00000529977.5_1_11:9164913-9166651:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015380859375 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 75.584 1 71.862 71.362 72.362 -3.7227 0 0 0 0.23508 1 14299 14299 4.897 0.70751 1 17023 6886 11146 11149 17095 17095 0.05019217482708882 GLYEFPLNKV 10 Unmodified _GLYEFPLNKV_ 0 0 0 TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6;nc|ENSG00000089195|Q9UJA5-4|TRMT6 TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2764892578125 2 590.324057 1178.63356 NaN NaN NaN NaN NaN NaN NaN 157.36 1 152.08 151.58 152.58 -5.2854 0 0 0 0.22559 1 30536 30536 17.113 1.8644 1 17024 1756 11147 11150 17096 17096 0.05138871682879653 GLYGMNFEY 9 Unmodified _GLYGMNFEY_ 0 0 0 tr|U7SNM2|U7SNM2_FUSNUMagnesiumtransportproteinCorAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=corAPE=3SV=1 tr|U7SNM2|U7SNM2_FUSNUMagnesiumtransportproteinCorAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=corAPE=3SV=1 tr|U7SNM2|U7SNM2_FUSNUMagnesiumtransportproteinCorAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=corAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.1878662109375 3 365.160154 1092.45863 NaN NaN NaN NaN NaN NaN NaN 62.083 1 59.122 58.622 59.622 -2.9614 0 0 0 0.1966 1 11975 11975 0.073264 0.059998 1 17025 26031 11148 11151 17097 17097 -0.08389871453778142 GLYLWDYL 8 Unmodified _GLYLWDYL_ 0 0 0 REV__nc|ENSG00000050130|Q9P055-3|JKAMP REV__nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2673950195312 2 521.765843 1041.51713 -0.71104 -0.000371 0.12076 6.3009E-05 -0.59028 -0.00030799 521.7654695515656 108.85 0.77042 104.48 104.15 104.92 -4.3776 34 21 2 0 0 0 8448 1 21519 21519 6.2058 0 1 1867300 + 17026 14082 11149 11152 17098 17098 -0.00196446817017204 GMALEPAAAV 10 Unmodified _GMALEPAAAV_ 0 0 0 REV__ENSG00000116260|ENST00000367602|QSOX1 REV__ENSG00000116260|ENST00000367602|QSOX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.241455078125 2 465.241678 928.468803 -0.15134 -7.0408E-05 -0.13353 -6.2124E-05 -0.28487 -0.00013253 465.2415150200904 69.531 0.46107 66.351 66.188 66.649 -3.1796 16 12 2 0 0 0 0.43819 1 13557 13557 3.5927 1.8504 1 1823400 + 17027 15477 11150 11153 17099 17099 0.001707362714341798 GMDLVVKTV 9 Unmodified _GMDLVVKTV_ 0 0 0 ENST00000471809.5_1_22:37159849-37172159:-|nuORF;nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27;ENST00000465023.1_1_22:37163271-37171742:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2545166015625 2 481.272978 960.531403 NaN NaN NaN NaN NaN NaN NaN 107.34 1 107.34 106.84 107.84 0 0 0 0 0.03591 1 21106 21106 59.368 36.632 1 17028 10216 11151 11154 17100 17100 0.049558823396409935 GMDLVVKTV 9 Unmodified _GMDLVVKTV_ 0 0 0 ENST00000471809.5_1_22:37159849-37172159:-|nuORF;nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27;ENST00000465023.1_1_22:37163271-37171742:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7685852050781 2 481.272978 960.531403 -0.26546 -0.00012776 -1.4825 -0.00071349 -1.748 -0.00084124 481.2733706580554 111.16 0.58878 106.74 106.44 107.03 -4.4231 35 16 3 0 0 0 0.037522 1 21918 21918 76.825 38.851 1 2162600 17029 10216 11151 11154 17101 17101 0.049558823396409935 GMDLVVKTV 9 Unmodified _GMDLVVKTV_ 0 0 0 ENST00000471809.5_1_22:37159849-37172159:-|nuORF;nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27;ENST00000465023.1_1_22:37163271-37171742:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7745361328125 2 481.272978 960.531403 -0.065258 -3.1407E-05 -0.39401 -0.00018963 -0.45927 -0.00022103 481.27288895625054 111.46 0.49123 106.97 106.64 107.14 -4.4915 33 13 3 0 0 0 0.05838 3 21397 21353;21397;21418 67.838 45.102 1 2767200 17030 10216 11151 11154 17102;17103;17104 17103 0.049558823396409935 GMDLVVKTV 9 Unmodified _GMDLVVKTV_ 0 0 0 ENST00000471809.5_1_22:37159849-37172159:-|nuORF;nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27;ENST00000465023.1_1_22:37163271-37171742:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7746276855469 2 481.272978 960.531403 0.55194 0.00026563 -0.66277 -0.00031897 -0.11083 -5.334E-05 481.27260519569523 111.12 0.48691 106.89 106.62 107.11 -4.2289 20 13 2 0 0 0 0.037522 1 21414 21414 76.825 49.941 1 2204300 17031 10216 11151 11154 17105 17105 0.049558823396409935 GMDNDFHHY 9 Oxidation (M) _GM(Oxidation (M))DNDFHHY_ GM(1)DNDFHHY GM(61)DNDFHHY 0 0 1 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3167724609375 2 576.21418 1150.41381 0.33627 0.00019376 -0.1693 -9.7553E-05 0.16697 9.621E-05 576.2140693913598 24.549 0.60909 24.549 24.337 24.947 0 28 17 2 0 0 0 0.13686 1 4234 4234 61.357 46.519 1 2345300 17032 838 11152 11155 17106 17106 2 -0.15538302267123072 GMDNDFHHY 9 Oxidation (M) _GM(Oxidation (M))DNDFHHY_ 0 0 1 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.21418 1150.41381 0.044071 2.5394E-05 -0.044999 -2.5929E-05 -0.00092854 -5.3504E-07 576.2142464976729 26.458 0.50654 24.536 24.335 24.841 -1.9222 -0.038537 0.00029172 NaN 61.357 37 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1148900 17033 838 11152 11155 2 -0.15538302267123072 GMDNDFHHY 9 Unmodified _GMDNDFHHY_ 0 0 0 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 379.82183837890625 3 379.146907 1134.41889 -0.026433 -1.0022E-05 -0.19628 -7.4419E-05 -0.22271 -8.4441E-05 379.14684742487486 44.943 0.78419 42.078 41.735 42.52 -2.8653 60 21 4 0 0 0 0.037776 1 8139 8139 97.138 95.923 1 20256000 17034 838 11152 11156 17107 17107 -0.14293998404491504 GMDNDFHHY 9 Unmodified _GMDNDFHHY_ 0 0 0 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 379.146907 1134.41889 0.062707 2.3775E-05 0.17272 6.5486E-05 0.23543 8.9262E-05 379.1469866747489 41.87 0.80433 41.87 41.444 42.249 0 -0.22582 7.3848E-05 NaN 97.138 63 22 4 NaN NaN NaN NaN 0 NaN NaN 0 13315000 17035 838 11152 11156 -0.14293998404491504 GMDNDFHHY 9 Unmodified _GMDNDFHHY_ 0 0 0 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 379.146907 1134.41889 -0.2431 -9.2169E-05 -0.043679 -1.6561E-05 -0.28678 -0.00010873 379.1469308808588 44.982 0.71404 42.192 41.812 42.526 -2.79 0.095911 -0.00017229 NaN 97.138 60 19 4 NaN NaN NaN NaN 0 NaN NaN 0 21566000 17036 838 11152 11156 -0.14293998404491504 GMDNDFHHY 9 Unmodified _GMDNDFHHY_ 0 0 0 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 379.146907 1134.41889 -0.7863 -0.00029812 0.55979 0.00021224 -0.22651 -8.5881E-05 379.14715304719897 44.991 0.98224 42.243 41.779 42.762 -2.7475 0.14763 0.00051411 NaN 97.138 70 27 4 NaN NaN NaN NaN 0 NaN NaN 0 15523000 17037 838 11152 11156 -0.14293998404491504 GMFCCCCYCF 10 Unmodified _GMFCCCCYCF_ 0 0 0 ENST00000494000.1_1_3:172048292-172052928:+|nuORF ENST00000494000.1_1_3:172048292-172052928:+|nuORF ENST00000494000.1_1_3:172048292-172052928:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2606811523438 2 590.166572 1178.31859 NaN NaN NaN NaN NaN NaN NaN 166.33 1 161.38 160.88 161.88 -4.9484 0 0 0 2.8426 1 32579 32579 0.0013812 0.0013812 1 17038 10553 11153 11157 17108 17108 -0.26343477641694335 GMGKLNNSV 9 Unmodified _GMGKLNNSV_ 0 0 0 REV__tr|U7STF8|U7STF8_FUSNUAmidohydrolase-relateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01393PE=4SV=1 REV__tr|U7STF8|U7STF8_FUSNUAmidohydrolase-relateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01393PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2359313964844 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 27.306 1 25.524 25.024 26.024 -1.7821 0 0 0 0.19512 1 4847 4847 12.241 2.1667 1 + 17039 25104 11154 11158 17109 17109 -0.003190320140674885 GMLEKIDMI 9 Oxidation (M) _GMLEKIDM(Oxidation (M))I_ GMLEKIDM(1)I GM(-78)LEKIDM(78)I 0 0 1 ENSG00000244462|ENST00000374114|RBM12;RBM12|p.K519Rfs*9|1|0.04|ENSG00000244462|chr20:35653767-35653768|-/C|frameshift_variant;RBM12|p.K507R|1|0.23|ENSG00000244462|chr20:35653803-35653803|T/C|missense_variant ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2694702148438 2 533.269578 1064.5246 0.17015 9.0737E-05 -0.66465 -0.00035444 -0.49449 -0.0002637 533.2696479088426 126.87 0.77079 122.25 121.84 122.61 -4.6172 47 21 3 0 0 0 0.031786 1 25047 25047 79.596 18.239 2 2899600 17040 7880 11155 11159 17110 17110 104 -0.0050779860325746995 GMLEKIDMI 9 Oxidation (M) _GMLEKIDM(Oxidation (M))I_ GMLEKIDM(1)I GM(-71)LEKIDM(71)I 0 0 1 ENSG00000244462|ENST00000374114|RBM12;RBM12|p.K519Rfs*9|1|0.04|ENSG00000244462|chr20:35653767-35653768|-/C|frameshift_variant;RBM12|p.K507R|1|0.23|ENSG00000244462|chr20:35653803-35653803|T/C|missense_variant ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2692260742188 2 533.269578 1064.5246 0.59343 0.00031646 -1.1345 -0.00060499 -0.54106 -0.00028853 533.2694764365779 127.14 0.53285 122.34 122.03 122.56 -4.7958 33 14 3 0 0 0 0.045725 2 24412 24408;24412 72.968 23.111 2 1905600 17041 7880 11155 11159 17111;17112 17112 104 -0.0050779860325746995 GMLEKIDMI 9 Oxidation (M) _GMLEKIDM(Oxidation (M))I_ GMLEKIDM(1)I GM(-65)LEKIDM(65)I 0 0 1 ENSG00000244462|ENST00000374114|RBM12;RBM12|p.K519Rfs*9|1|0.04|ENSG00000244462|chr20:35653767-35653768|-/C|frameshift_variant;RBM12|p.K507R|1|0.23|ENSG00000244462|chr20:35653803-35653803|T/C|missense_variant ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2697143554688 2 533.269578 1064.5246 0.22395 0.00011943 -1.2563 -0.00066996 -1.0324 -0.00055053 533.2695828594403 127.06 0.74097 122.36 121.97 122.71 -4.6998 50 20 3 0 0 0 0.063365 1 24478 24478 66.457 11.683 2 3186600 17042 7880 11155 11159 17113 17113 104 -0.0050779860325746995 GMPRRYSDYPD 11 Unmodified _GMPRRYSDYPD_ 0 0 0 ENSG00000198804|ENST00000361624|MT-CO1 ENSG00000198804|ENST00000361624|MT-CO1 ENSG00000198804|ENST00000361624|MT-CO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 452.86968994140625 3 452.871555 1355.59283 NaN NaN NaN NaN NaN NaN NaN 11.535 1 11.535 11.035 12.035 0 0 0 0 0.22632 1 1536 1536 0.026206 0.02025 1 17043 7499 11156 11160 17114 17114 -0.07073837699044816 GMQGAGIQGV 10 Unmodified _GMQGAGIQGV_ 0 0 0 ENSG00000177613|ENST00000331173|CSTF2T ENSG00000177613|ENST00000331173|CSTF2T ENSG00000177613|ENST00000331173|CSTF2T MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23162841796875 2 459.229102 916.443651 -0.22163 -0.00010178 0.82022 0.00037667 0.59859 0.00027489 459.2295400134289 72.102 0.70887 68.791 68.424 69.132 -3.3107 45 19 3 0 0 0 0.029144 4 14081 14033;14046;14072;14081 75.571 31.589 1 15531000 17044 6524 11157 11161 17115;17116;17117;17118 17118 -0.017913185311158486 GMQGAGIQGV 10 Unmodified _GMQGAGIQGV_ 0 0 0 ENSG00000177613|ENST00000331173|CSTF2T ENSG00000177613|ENST00000331173|CSTF2T ENSG00000177613|ENST00000331173|CSTF2T MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23291015625 2 459.229102 916.443651 0.22441 0.00010306 0.21768 9.9964E-05 0.44209 0.00020302 459.2292388457041 72.471 0.68587 68.844 68.514 69.2 -3.6275 42 18 3 0 0 0 0.0077871 1 13676 13676 90.884 30.414 1 10925000 17045 6524 11157 11161 17119 17119 -0.017913185311158486 GMQGAGIQGV 10 Unmodified _GMQGAGIQGV_ 0 0 0 ENSG00000177613|ENST00000331173|CSTF2T ENSG00000177613|ENST00000331173|CSTF2T ENSG00000177613|ENST00000331173|CSTF2T MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2316589355469 2 459.229102 916.443651 0.35976 0.00016521 0.088219 4.0513E-05 0.44798 0.00020573 459.2291838423696 72.429 0.6954 68.89 68.501 69.197 -3.5385 44 19 3 0 0 0 0.029144 1 13748 13748 67.081 26.764 1 11121000 17046 6524 11157 11161 17120 17120 -0.017913185311158486 GMSGRQKR 8 Unmodified _GMSGRQKR_ 0 0 0 REV__NRDE2|p.R90Gfs*69|1|0.16|ENSG00000119720|chr14:90316717-90316717|T/-|frameshift_variant REV__NRDE2|p.R90Gfs*69|1|0.16|ENSG00000119720|chr14:90316717-90316717|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2485656738281 2 460.24816 918.481768 NaN NaN NaN NaN NaN NaN NaN 179.16 1 179.16 178.66 179.66 0 0 0 0 0.21486 1 37111 37111 0.79363 0 1 + 17047 24383 11158 11162 17121 17121 0.019266121742020914 GMSSLAGLQP 10 Unmodified _GMSSLAGLQP_ 0 0 0 REV__ENST00000478241.6_2_12:56229554-56229878:+|nuORF REV__ENST00000478241.6_2_12:56229554-56229878:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2325744628906 2 480.744585 959.474617 0.42298 0.00020334 -0.35774 -0.00017198 0.065238 3.1363E-05 480.74441509679775 29.439 0.8314 27.365 27 27.831 -2.0743 43 23 2 0 0 0 0.59736 1 5080 5080 19.362 0.10495 1 1730200 + 17048 22139 11159 11163 17122 17122 -0.006741652168670953 GMTFAPIH 8 Unmodified _GMTFAPIH_ 0 0 0 REV__ENSG00000182950|ENST00000332145|ODF3L1 REV__ENSG00000182950|ENST00000332145|ODF3L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2164611816406 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 116.61 1 116.61 116.11 117.11 0 0 0 0 0.21486 1 22963 22963 5.2307 0 1 + 17049 18811 11160 11164 17123 17123 -0.019854982088986617 GMTFAPIH 8 Unmodified _GMTFAPIH_ 0 0 0 REV__ENSG00000182950|ENST00000332145|ODF3L1 REV__ENSG00000182950|ENST00000332145|ODF3L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2160949707031 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 152.5 1 147.26 146.76 147.76 -5.2365 0 0 0 0.21486 1 29566 29566 5.7604 1.816 1 + 17050 18811 11160 11164 17124 17124 -0.019854982088986617 GMTHIVREV 9 Unmodified _GMTHIVREV_ 0 0 0 ENST00000413027.1_1_6:31248141-31248948:+|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000461967.1_1_22:39714348-39714516:-|nuORF;ENST00000484615.5_1_22:39713464-39715605:-|nuORF;ENST00000460589.5_1_22:39713464-39715412:-|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 521.11865234375 2 521.279126 1040.5437 0.47722 0.00024876 0.32788 0.00017092 0.8051 0.00041968 521.2793614222624 48.948 0.38903 48.948 48.736 49.125 0 15 10 2 0 0 0 0.8372 1 9276 9276 2.7352 1.9416 1 800470 17051 1951 11161 11165 17125 17125 0.02504918802674183 GMVKHRAY 8 Unmodified _GMVKHRAY_ 0 0 0 ENSG00000132300|ENST00000254630|PTCD3;ENST00000480102.1_1_2:86348636-86354336:+|nuORF;ENST00000484203.5_1_2:86348636-86354493:+|nuORF ENSG00000132300|ENST00000254630|PTCD3 ENSG00000132300|ENST00000254630|PTCD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25408935546875 2 481.255454 960.496355 NaN NaN NaN NaN NaN NaN NaN 97.726 1 93.491 92.991 93.991 -4.2348 0 0 0 0.21486 1 18670 18670 10.183 0.80027 1 17052 3713 11162 11166 17126 17126 0.01452684322339337 GMVPDFKY 8 Unmodified _GMVPDFKY_ 0 0 0 DIAPH2|p.D464V|1|0.26|ENSG00000147202|chrX:96942083-96942083|A/T|missense_variant DIAPH2|p.D464V|1|0.26|ENSG00000147202|chrX:96942083-96942083|A/T|missense_variant DIAPH2|p.D464V|1|0.26|ENSG00000147202|chrX:96942083-96942083|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72894287109375 2 478.730946 955.447339 NaN NaN NaN NaN NaN NaN NaN 42.959 1 40.308 39.808 40.808 -2.651 0 0 0 0.21486 1 7745 7745 12.532 0 1 17053 834 11163 11167 17127 17127 -0.032166487572681035 GMWLSKAL 8 Unmodified _GMWLSKAL_ 0 0 0 REV__USH2A|p.F1618Lfs*17|1|0.36|ENSG00000042781|chr1:216089044-216089044|A/-|frameshift_variant REV__USH2A|p.F1618Lfs*17|1|0.36|ENSG00000042781|chr1:216089044-216089044|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7508850097656 2 453.249306 904.484059 0.17148 7.7724E-05 0.3745 0.00016974 0.54598 0.00024746 453.2494722375063 31.666 0.56277 29.436 29.094 29.657 -2.2305 22 15 2 0 0 0 0.18731 1 5739 5739 46.921 46.921 1 2967700 + 17054 25522 11164 11168 17128 17128 0.02799647859308152 GNAYIVASRD 10 Unmodified _GNAYIVASRD_ 0 0 0 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2698364257812 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 38.917 1 38.917 38.417 39.417 0 0 0 0 2.8426 1 7220 7220 10.151 1.995 1 17055 4287 11165 11169 17129 17129 -0.004609195675357114 GNDNAMHEVS 10 Unmodified _GNDNAMHEVS_ 0 0 0 REV__ENST00000368667.6_1_6:112114944-112115073:-|nuORF REV__ENST00000368667.6_1_6:112114944-112115073:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 358.1973571777344 3 358.482067 1072.42437 -0.32908 -0.00011797 0.88488 0.00031721 0.5558 0.00019924 358.4823636270778 47.591 0.77196 44.722 44.391 45.163 -2.869 76 21 5 0 0 0 0.91149 1 9016 9016 1.3296 0 1 22771000 + 17056 20945 11166 11170 17130 17130 -0.10894319612680192 GNEDDEYFRV 10 Unmodified _GNEDDEYFRV_ 0 0 0 REV__nc|ENSG00000077150|Q00653-4|NFKB2 REV__nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7811279296875 2 622.264924 1242.5153 0.91102 0.0005669 -1.5067 -0.00093758 -0.59569 -0.00037068 622.7672211493754 59.006 0.46417 56.095 55.784 56.248 -2.9105 24 12 3 0 0 0 0.68961 1 11283 11283 12.241 0 1 1534300 + 17057 14360 11167 11171 17131 17131 -0.09626152363580331 GNESGSGN 8 Unmodified _GNESGSGN_ 0 0 0 CON__Q95M17 CON__Q95M17 CON__Q95M17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.1400146484375 2 361.141007 720.267461 NaN NaN NaN NaN NaN NaN NaN 115.36 1 115.36 114.86 115.86 0 0 0 0 0.21486 1 22703 22703 2.3027 0.24298 1 + 17058 705 11168 11172 17132 17132 -0.10386236440706398 GNGDGGGG 8 Unmodified _GNGDGGGG_ 0 0 0 ENST00000513117.1_1_5:6633544-6656205:+|nuORF;ENST00000510531.5_1_5:6633544-6644998:+|nuORF;ENST00000274192.6_2_5:6633463-6652038:+|nuORF ENST00000513117.1_1_5:6633544-6656205:+|nuORF ENST00000513117.1_1_5:6633544-6656205:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2687377929688 1 590.216494 589.209218 0.58766 0.00034685 0.9565 0.00056454 1.5442 0.00091139 590.212385909023 151.53 0.17819 146.78 146.71 146.88 -4.7523 5 4 2 0 0 0 0.89856 4 30097 30093;30097;30119;30123 0 0 1 634080 17059 8424 11169 11173 17133;17134;17135;17136 17134 -0.10181873295312016 GNGEVSRLAY 10 Unmodified _GNGEVSRLAY_ 0 0 0 REV__nc|ENSG00000113389|P17342-2|NPR3 REV__nc|ENSG00000113389|P17342-2|NPR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2700805664062 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 37.068 1 34.6 34.1 35.1 -2.4688 0 0 0 2.8426 1 6846 6846 3.8763 0 1 + 17060 15340 11170 11174 17137 17137 -0.004609195675357114 GNGKGAAG 8 Unmodified _GNGKGAAG_ 0 0 0 ENST00000464458.1_1_2:95770271-95772347:-|nuORF;ENST00000475895.5_1_2:95770271-95787536:-|nuORF;ENSG00000144029|ENST00000272418|MRPS5 ENST00000464458.1_1_2:95770271-95772347:-|nuORF ENST00000464458.1_1_2:95770271-95772347:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76220703125 1 631.315814 630.308538 1.1061 0.00069828 -3.4542 -0.0021807 -2.3481 -0.0014824 631.3125348888245 157.75 0.24402 152.96 152.88 153.12 -4.7885 8 6 2 0 0 0 0.89712 1 31402 31402 0.0082765 0 1 597980 17061 4538 11171 11175 17138 17138 -0.021404306105750948 GNGMGGRT 8 Unmodified _GNGMGGRT_ 0 0 0 REV__ENST00000474135.1_1_7:150747249-150747845:+|nuORF REV__ENST00000474135.1_1_7:150747249-150747845:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2098388671875 2 375.171587 748.328621 NaN NaN NaN NaN NaN NaN NaN 124.39 1 124.39 123.89 124.89 0 0 0 0 0.23837 1 24526 24526 0.62683 0 1 + 17062 19637 11172 11176 17139 17139 -0.05561002942272353 GNGTLSWNF 9 Unmodified _GNGTLSWNF_ 0 0 0 ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant;CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant;CELSR3|p.S1935Afs*4|1|0.38|ENSG00000008300|chr3:48651998-48651998|G/-|frameshift_variant ENSG00000008300|ENST00000164024|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 498.2342834472656 2 498.232699 994.450845 NaN NaN NaN NaN NaN NaN NaN 94.947 1 91.066 90.566 91.566 -3.881 0 0 0 0.19698 1 18218 18218 0.40827 0.23627 1 17063 1042 11173 11177 17140 17140 -0.04660262659047021 GNGVRPVVK 9 Unmodified _GNGVRPVVK_ 0 0 0 REV__nc|ENSG00000166822|Q8WVE7-2|TMEM170A REV__nc|ENSG00000166822|Q8WVE7-2|TMEM170A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 309.20599365234375 3 309.190776 924.550499 NaN NaN NaN NaN NaN NaN NaN 97.394 1 93.475 92.975 93.975 -3.9194 0 0 0 0.23508 1 18690 18690 0.26902 0.26902 1 + 17064 17876 11174 11178 17141 17141 0.0852059974556596 GNGVRPVVK 9 Unmodified _GNGVRPVVK_ 0 0 0 REV__nc|ENSG00000166822|Q8WVE7-2|TMEM170A REV__nc|ENSG00000166822|Q8WVE7-2|TMEM170A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 309.1817321777344 3 309.190776 924.550499 NaN NaN NaN NaN NaN NaN NaN 97.752 1 93.832 93.332 94.332 -3.9194 0 0 0 0.23508 1 18761 18761 0.26902 0.26902 1 + 17065 17876 11174 11178 17142 17142 0.0852059974556596 GNGYGNPQN 9 Unmodified _GNGYGNPQN_ 0 0 0 MEF2C|p.R220Q|1|0.34|ENSG00000081189|chr5:88731880-88731880|C/T|missense_variant MEF2C|p.R220Q|1|0.34|ENSG00000081189|chr5:88731880-88731880|C/T|missense_variant MEF2C|p.R220Q|1|0.34|ENSG00000081189|chr5:88731880-88731880|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2439270019531 2 460.696481 919.378408 -0.21166 -9.7512E-05 0.54448 0.00025084 0.33282 0.00015333 460.69665255572426 109.22 0.55331 104.77 104.43 104.98 -4.4518 29 15 3 0 0 0 0.56709 1 20949 20949 2.6312 0 1 1067900 17066 12124 11175 11179 17143 17143 -0.08450596732609483 GNHRKSAVLAV 11 Unmodified _GNHRKSAVLAV_ 0 0 0 ENST00000310571.7_2_11:73638459-73638669:+|nuORF ENST00000310571.7_2_11:73638459-73638669:+|nuORF ENST00000310571.7_2_11:73638459-73638669:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3328857421875 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 56.184 1 56.184 55.684 56.684 0 0 0 0 0.22632 1 10728 10728 3.0723 1.1448 1 17067 8641 11176 11180 17144 17144 0.08778730240078403 GNHRKSAVLAV 11 Unmodified _GNHRKSAVLAV_ 0 0 0 ENST00000310571.7_2_11:73638459-73638669:+|nuORF ENST00000310571.7_2_11:73638459-73638669:+|nuORF ENST00000310571.7_2_11:73638459-73638669:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3336181640625 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 59.272 1 55.958 55.458 56.458 -3.3139 0 0 0 0.22632 1 11021 11021 3.0723 1.1448 1 17068 8641 11176 11180 17145 17145 0.08778730240078403 GNIMLIHLI 9 Unmodified _GNIMLIHLI_ 0 0 0 ENSG00000187080|ENST00000366480|OR2AK2;nc|ENSG00000187080|Q8NG84|OR2AK2 ENSG00000187080|ENST00000366480|OR2AK2 ENSG00000187080|ENST00000366480|OR2AK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.87237548828125 3 341.872167 1022.59467 NaN NaN NaN NaN NaN NaN NaN 52.075 1 49.193 48.693 49.693 -2.8824 0 0 0 0.19657 1 9904 9904 4.897 3.6822 1 17069 7093 11177 11181 17146 17146 0.08427867847535708 GNKGALGP 8 Unmodified _GNKGALGP_ 0 0 0 REV__COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant REV__COL6A2|p.P584Lfs*12|1|0.46|ENSG00000142173|chr21:46124896-46124896|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.552001953125 2 357.20067 712.386788 NaN NaN NaN NaN NaN NaN NaN 61.73 1 58.36 57.86 58.86 -3.3694 0 0 0 0.23711 1 11512 11512 0.62683 0 1 + 17070 13495 11178 11182 17147 17147 0.019090019746727194 GNKIKDPVHAT 11 Unmodified _GNKIKDPVHAT_ 0 0 0 REV__ENST00000409879.6_1_13:46952090-46961968:-|nuORF REV__ENST00000409879.6_1_13:46952090-46961968:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2483520507812 2 590.327662 1178.64077 NaN NaN NaN NaN NaN NaN NaN 118.65 1 118.65 118.15 119.15 0 0 0 0 0.23018 1 23366 23366 8.1555 1.4324 1 + 17071 21418 11179 11183 17148 17148 0.05859604283318731 GNLARCPQA 9 Unmodified _GNLARCPQA_ 0 0 0 REV__ENST00000486828.6_1_5:176910647-176917003:-|nuORF REV__ENST00000486828.6_1_5:176910647-176917003:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2435607910156 2 465.234719 928.454884 NaN NaN NaN NaN NaN NaN NaN 25.552 1 25.552 25.052 26.052 0 0 0 0 0.19638 1 4439 4439 2.6312 0 1 + 17072 22243 11180 11184 17149 17149 -0.012204964369857407 GNLSRNLEY 9 Unmodified _GNLSRNLEY_ 0 0 0 tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1 tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1 tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2691650390625 2 533.269813 1064.52507 0.37186 0.0001983 -0.07034 -3.751E-05 0.30152 0.00016079 533.2696417282177 35.472 0.52522 33.195 32.895 33.42 -2.2766 28 14 3 0 0 0 0.25976 1 6196 6196 17.113 2.2746 1 1266500 17073 25969 11181 11185 17150 17150 -0.004609195675357114 GNLWKNHR 8 Unmodified _GNLWKNHR_ 0 0 0 nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1;ENST00000528236.5_1_11:45945714-45947705:+|nuORF;LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant;ENSG00000165905|ENST00000401752|LARGE2 nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000165905|ENST00000401752|LARGE2 nc|ENSG00000133424|O95461-2|LARGE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.520751953125 3 342.186025 1023.53625 -0.13504 -4.6209E-05 -1.44 -0.00049276 -1.5751 -0.00053897 342.18544047196036 22.152 0.37704 20.699 20.423 20.801 -1.4535 13 10 2 0 0 0 0.89879 1 3534 3534 0.0082765 0 1 201580 17074 3803;5673 11182 11186 17151 17151 0.025419473172632934 GNLWKNHR 8 Unmodified _GNLWKNHR_ 0 0 0 nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1;ENST00000528236.5_1_11:45945714-45947705:+|nuORF;LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant;ENSG00000165905|ENST00000401752|LARGE2 nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000165905|ENST00000401752|LARGE2 nc|ENSG00000133424|O95461-2|LARGE1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 342.186025 1023.53625 -0.37827 -0.00012944 -1.061 -0.00036307 -1.4393 -0.00049251 342.18565034151743 20.75 0.32187 20.75 20.597 20.919 0 0.056182 -0.00015902 NaN 0.0082765 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 512030 17075 3803;5673 11182 11186 0.025419473172632934 GNLWKNHR 8 Unmodified _GNLWKNHR_ 0 0 0 nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1;ENST00000528236.5_1_11:45945714-45947705:+|nuORF;LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant;ENSG00000165905|ENST00000401752|LARGE2 nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000165905|ENST00000401752|LARGE2 nc|ENSG00000133424|O95461-2|LARGE1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.186025 1023.53625 -1.2578 -0.0004304 -0.20979 -7.1786E-05 -1.4676 -0.00050219 342.1858405953257 22.422 0.31695 20.633 20.466 20.782 -1.7886 -0.061109 0.00071483 NaN 0.0082765 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 261550 17076 3803;5673 11182 11186 0.025419473172632934 GNNKLEIM 8 Unmodified _GNNKLEIM_ 0 0 0 REV__tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1 REV__tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.22650146484375 2 459.739302 917.464052 0.51516 0.00023684 -1.1108 -0.00051068 -0.59563 -0.00027384 459.7389024009235 44.568 0.1441 44.568 44.495 44.639 0 5 3 2 0 0 0 0.95284 1 8377 8377 9.3474 0 1 240150 + 17077 24936 11183 11187 17152 17152 0.0020185212868000235 GNPLPSERS 9 Unmodified _GNPLPSERS_ 0 0 0 REV__ENST00000475935.5_1_1:33585534-33585780:+|nuORF REV__ENST00000475935.5_1_1:33585534-33585780:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7423400878906 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 104.12 1 100.07 99.566 100.57 -4.0543 0 0 0 0.19721 1 20022 20022 24.021 0.87215 1 + 17078 22101 11184 11188 17153 17153 -0.007208776303286868 GNQMKRMC 8 Unmodified _GNQMKRMC_ 0 0 0 nc|ENSG00000100614|P35813-3|PPM1A nc|ENSG00000100614|P35813-3|PPM1A nc|ENSG00000100614|P35813-3|PPM1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.1607360839844 3 323.147197 966.419761 NaN NaN NaN NaN NaN NaN NaN 95.184 1 95.184 94.684 95.684 0 0 0 0 0.21486 1 18646 18646 0.45834 0 1 17079 12257 11185 11189 17154 17154 -0.06479198560793975 GNRHIHDL 8 Unmodified _GNRHIHDL_ 0 0 0 REV__ENST00000524019.5_1_14:102717905-102771389:-|nuORF REV__ENST00000524019.5_1_14:102717905-102771389:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2414855957031 2 481.251757 960.488962 NaN NaN NaN NaN NaN NaN NaN 77.849 1 74.386 73.886 74.886 -3.4633 0 0 0 0.22847 1 15201 15201 10.074 1.9184 1 + 17080 14418 11186 11190 17155 17155 0.007136680462849654 GNSMVIWL 8 Unmodified _GNSMVIWL_ 0 0 0 ENSG00000172938|ENST00000309106|MRGPRD ENSG00000172938|ENST00000309106|MRGPRD ENSG00000172938|ENST00000309106|MRGPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2388916015625 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 64.943 1 64.943 64.443 65.443 0 0 0 0 0.22847 1 12510 12510 10.074 0 1 17081 6255 11187 11191 17156 17156 0.000830574796395922 GPAAALLGRH 10 Unmodified _GPAAALLGRH_ 0 0 0 REV__ENST00000378426.5_2_X:40506367-40506781:-|nuORF REV__ENST00000378426.5_2_X:40506367-40506781:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78143310546875 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 163.1 1 163.1 162.6 163.6 0 0 0 0 2.8426 1 32845 32845 1.0651 0.38376 1 + 17082 18985 11188 11192 17157 17157 0.06343715602793054 GPACKCIY 8 Unmodified _GPACKCIY_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.1404113769531 2 427.698592 853.382631 -0.089523 -3.8289E-05 -0.9818 -0.00041992 -1.0713 -0.00045821 427.6980999542683 60.656 1.0167 57.432 56.926 57.942 -3.2237 65 28 3 0 0 0 1.0035 1 11269 11269 2.8892 0 1 4154900 + 17083 14429 11189 11193 17158 17158 -0.04992546834921541 GPADEYYIIY 10 Unmodified _GPADEYYIIY_ 0 0 0 ENSG00000162994|ENST00000401408|CLHC1;ENST00000463300.1_1_2:55445673-55449583:-|nuORF ENSG00000162994|ENST00000401408|CLHC1 ENSG00000162994|ENST00000401408|CLHC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2972412109375 2 602.282054 1202.54956 0.42484 0.00025587 -0.68571 -0.00041299 -0.26087 -0.00015712 602.2820967557908 74.479 0.13878 70.885 70.815 70.954 -3.594 5 3 2 0 0 0 0.7323 1 14134 14134 7.9102 1.187 1 416950 17084 5389 11190 11194 17159 17159 -0.04361704204666239 GPADHWPPPQ 10 Unmodified _GPADHWPPPQ_ 0 0 0 ENST00000381168.7_1_11:2187868-2190906:-|nuORF ENST00000381168.7_1_11:2187868-2190906:-|nuORF ENST00000381168.7_1_11:2187868-2190906:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 551.0794677734375 2 551.259248 1100.50394 0.20701 0.00011411 -0.8195 -0.00045176 -0.61249 -0.00033764 551.7582428845162 143.26 0.31256 138.61 138.37 138.68 -4.656 10 8 2 0 0 0 0.8888 1 28344 28344 3.9444 0 1 1805200 17085 9324 11191 11195 17160 17160 -0.042288848763973874 GPAECLGLR 9 Unmodified _GPAECLGLR_ 0 0 0 ENSG00000270765|ENST00000604641|GAS2L2 ENSG00000270765|ENST00000604641|GAS2L2 ENSG00000270765|ENST00000604641|GAS2L2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384033203125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 176.14 1 171.24 170.74 171.74 -4.9008 0 0 0 0.23508 1 35114 35114 4.3292 0 1 17086 8000 11192 11196 17161 17161 0.003732718485252917 GPAEDGNEQE 10 Unmodified _GPAEDGNEQE_ 0 0 0 REV__PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant REV__PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6921997070312 2 523.207075 1044.3996 0.1876 9.8155E-05 0.12478 6.5287E-05 0.31238 0.00016344 523.2066993053711 138.84 0.91071 138.84 138.38 139.29 0 65 25 4 0 0 0 0.59928 2 27607 27607;27650 19.257 0 1 11379000 + 17087 19838 11193 11197 17162;17163 17162 -0.12082676214413368 GPAEPSPGP 9 Unmodified _GPAEPSPGP_ 0 0 0 REV__ENSG00000168772|ENST00000394767|CXXC4 REV__ENSG00000168772|ENST00000394767|CXXC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 404.3089599609375 2 404.695418 807.376283 -0.45291 -0.00018329 0.42575 0.0001723 -0.027158 -1.0991E-05 404.69553761892024 56.773 1.7442 53.597 52.761 54.505 -3.1761 81 48 2 0 0 0 0.59384 1 10438 10438 13.508 0 1 4569300 + 17088 18053 11194 11198 17164 17164 -0.03511025470425011 GPAEPSPGP 9 Unmodified _GPAEPSPGP_ 0 0 0 REV__ENSG00000168772|ENST00000394767|CXXC4 REV__ENSG00000168772|ENST00000394767|CXXC4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 404.695418 807.376283 -0.024599 -9.9552E-06 0.099323 4.0195E-05 0.074723 3.024E-05 404.695366911118 53.537 1.3461 53.537 53.144 54.49 0 0.015188 -0.00012183 NaN 13.508 83 37 3 NaN NaN NaN NaN 0 NaN NaN 0 5275500 + 17089 18053 11194 11198 -0.03511025470425011 GPAEPSPGP 9 Unmodified _GPAEPSPGP_ 0 0 0 REV__ENSG00000168772|ENST00000394767|CXXC4 REV__ENSG00000168772|ENST00000394767|CXXC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 404.695418 807.376283 -0.33853 -0.000137 0.47434 0.00019196 0.1358 5.4959E-05 404.6955263999295 56.446 1.833 53.551 52.686 54.519 -2.8944 0.029845 0.0001817 NaN 13.508 81 52 2 NaN NaN NaN NaN 0 NaN NaN 0 6961200 + 17090 18053 11194 11198 -0.03511025470425011 GPAEPSPGP 9 Unmodified _GPAEPSPGP_ 0 0 0 REV__ENSG00000168772|ENST00000394767|CXXC4 REV__ENSG00000168772|ENST00000394767|CXXC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 404.695418 807.376283 0.053747 2.1751E-05 -0.0070789 -2.8648E-06 0.046668 1.8886E-05 404.6953362203137 56.59 1.1502 53.401 53.231 54.381 -3.1895 -0.12072 -0.00020795 NaN 13.508 60 32 2 NaN NaN NaN NaN 0 NaN NaN 0 4342600 + 17091 18053 11194 11198 -0.03511025470425011 GPAEPSPGP 9 Unmodified _GPAEPSPGP_ 0 0 0 REV__ENSG00000168772|ENST00000394767|CXXC4 REV__ENSG00000168772|ENST00000394767|CXXC4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 404.695418 807.376283 -0.45291 -0.00018329 0.42575 0.0001723 -0.027158 -1.0991E-05 404.69553761892024 56.773 1.7442 53.597 52.761 54.505 -3.1761 0.075682 0.00014237 NaN 13.508 81 48 2 NaN NaN NaN NaN 0 NaN NaN 0 4569300 + 17092 18053 11194 11198 -0.03511025470425011 GPAGDTMGH 9 Unmodified _GPAGDTMGH_ 0 0 0 ENST00000403136.1_1_19:43025413-43032607:-|nuORF;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;ENST00000377806.7_1_19:43023094-43032607:-|nuORF ENST00000403136.1_1_19:43025413-43032607:-|nuORF ENST00000403136.1_1_19:43025413-43032607:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4151000976562 1 842.346128 841.338851 0.42744 0.00036005 -1.7442 -0.0014692 -1.3168 -0.0011092 842.3482604176978 167.53 0.27153 162.58 162.43 162.7 -4.948 9 7 2 0 0 0 0.73309 1 32985 32985 4.756 0 1 39165000 17093 8888 11195 11199 17165 17165 -0.08816440007683468 GPAGLPGAPGI 11 Unmodified _GPAGLPGAPGI_ 0 0 0 ENSG00000197565|ENST00000334504|COL4A6;nc|ENSG00000197565|Q14031|COL4A6 ENSG00000197565|ENST00000334504|COL4A6 ENSG00000197565|ENST00000334504|COL4A6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7559814453125 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 58.097 1 54.892 54.392 55.392 -3.2052 0 0 0 0.23199 1 10836 10836 6.7232 0 1 17094 7380 11196 11200 17166 17166 0.04053802243049631 GPAGWDQLSL 10 Unmodified _GPAGWDQLSL_ 0 0 0 REV__ENST00000355007.7_1_9:131897101-131897140:+|nuORF REV__ENST00000355007.7_1_9:131897101-131897140:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2760009765625 2 522.261456 1042.50836 0.6927 0.00036177 -0.57241 -0.00029895 0.1203 6.2826E-05 522.261121425028 109.9 0.73291 105.71 105.47 106.2 -4.1826 31 20 2 0 0 0 0.050917 1 21165 21165 6.5879 0 1 2338700 + 17095 20786 11197 11201 17167 17167 -0.011194204534604069 GPAGWERKW 9 Unmodified _GPAGWERKW_ 0 0 0 REV__ENST00000482969.5_1_22:50693515-50695072:-|nuORF REV__ENST00000482969.5_1_22:50693515-50695072:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7783813476562 2 543.777608 1085.54066 NaN NaN NaN NaN NaN NaN NaN 13.689 1 13.689 13.189 14.189 0 0 0 0 0.23508 1 1992 1992 2.3027 0 1 + 17096 22198 11198 11202 17168 17168 0.001314117401761905 GPALHGRFLLA 11 Unmodified _GPALHGRFLLA_ 0 0 0 ENSG00000127528|ENST00000248071|KLF2 ENSG00000127528|ENST00000248071|KLF2 ENSG00000127528|ENST00000248071|KLF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3353881835938 2 576.337833 1150.66111 0.30093 0.00017344 2.1083 0.0012151 2.4093 0.0013885 576.340331197756 153.48 0.10481 153.48 153.41 153.51 0 4 2 2 0 0 0 0.7348 1 30746 30746 9.3831 3.6513 1 1482700 17097 3480 11199 11203 17169 17169 0.09180819733796852 GPALMSGAVL 10 Unmodified _GPALMSGAVL_ 0 0 0 REV__nc|ENSG00000136261|Q9Y6E2-2|BZW2 REV__nc|ENSG00000136261|Q9Y6E2-2|BZW2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.21929931640625 2 458.252046 914.489538 0.14866 6.8122E-05 -0.16127 -7.3903E-05 -0.012614 -5.7805E-06 458.2519809157306 128.13 0.74014 123.39 122.95 123.69 -4.7408 33 20 2 0 0 0 0.55366 1 24702 24702 21.747 2.3076 1 2174200 + 17098 16321 11200 11204 17170 17170 0.028873266511141082 GPALPSGLPEQ 11 Unmodified _GPALPSGLPEQ_ 0 0 0 REV__ENSG00000100350|ENST00000397224|FOXRED2 REV__ENSG00000100350|ENST00000397224|FOXRED2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2866821289062 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 166.44 1 161.46 160.96 161.96 -4.9811 0 0 0 0.21688 1 32625 32625 14.838 1.3304 1 + 17099 14698 11201 11205 17171 17171 0.02053135235018999 GPALRLHR 8 Unmodified _GPALRLHR_ 0 0 0 REV__ENST00000334370.8_1_19:42838337-42839206:+|nuORF REV__ENST00000334370.8_1_19:42838337-42839206:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23199462890625 2 460.28286 918.551168 NaN NaN NaN NaN NaN NaN NaN 105.29 1 105.29 104.79 105.79 0 0 0 0 0.23294 1 20696 20696 3.2813 0 1 + 17100 20645 11202 11206 17172 17172 0.08863439185256539 GPAMMMSN 8 Unmodified _GPAMMMSN_ 0 0 0 REV__BCL9L|p.P1249Lfs*32|1|0.58|ENSG00000186174|chr11:118899171-118899171|C/-|frameshift_variant REV__BCL9L|p.P1249Lfs*32|1|0.58|ENSG00000186174|chr11:118899171-118899171|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4771728515625 1 838.325592 837.318316 0.66023 0.00055349 1.9686 0.0016504 2.6289 0.0022038 838.3289605786013 178.05 0.21123 173.26 173.1 173.31 -4.7898 6 5 2 0 0 0 0.7545 1 36428 36428 6.3541 1.1234 1 908430 + 17101 13187 11203 11207 17173 17173 -0.10685069983355788 GPAMTSVPR 9 Unmodified _GPAMTSVPR_ 0 0 0 NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23809814453125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 58.825 1 58.825 58.325 59.325 0 0 0 0 0.21469 1 11263 11263 19.257 1.122 1 17102 12689 11204 11208 17174 17174 0.003732718485366604 GPAPERSDK 9 Unmodified _GPAPERSDK_ 0 0 0 REV__nc|ENSG00000151136|A6QL63-5|ABTB3 REV__nc|ENSG00000151136|A6QL63-5|ABTB3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7417907714844 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 151.74 1 146.99 146.49 147.49 -4.7523 0 0 0 0.23411 1 30154 30154 13.508 0 1 + 17103 24097 11205 11209 17175 17175 -0.007208776303286868 GPAPGGYG 8 Unmodified _GPAPGGYG_ 0 0 0 REV__PEF1|p.G53R|1|0.23|ENSG00000162517|chr1:31635390-31635390|C/T|missense_variant REV__PEF1|p.G53R|1|0.23|ENSG00000162517|chr1:31635390-31635390|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.1591796875 2 338.158471 674.30239 NaN NaN NaN NaN NaN NaN NaN 28.605 1 26.648 26.148 27.148 -1.9561 0 0 0 0.23899 1 5122 5122 1.3295 1.3295 1 + 17104 17503 11206 11210 17176 17176 -0.04778948842090358 GPAPHPRRPPA 11 Unmodified _GPAPHPRRPPA_ 0 0 0 REV__ENST00000570109.1_1_15:43426051-43427957:+|nuORF REV__ENST00000570109.1_1_15:43426051-43427957:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3387451171875 2 576.822881 1151.63121 0.30158 0.00017396 -4.4584 -0.0025717 -4.1568 -0.0023977 576.8216271111454 149.49 0.46696 149.49 149.3 149.77 0 15 12 2 0 0 0 0.91954 1 29916 29916 9.3831 3.1773 1 1344400 + 17105 16419 11207 11211 17177 17177 0.061458807884719135 GPAQIQSRPP 10 Unmodified _GPAQIQSRPP_ 0 0 0 REV__ENST00000396707.6_1_7:6617123-6618326:+|nuORF REV__ENST00000396707.6_1_7:6617123-6618326:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 525.7887573242188 2 525.788173 1049.56179 -0.85265 -0.00044831 0.28803 0.00015144 -0.56462 -0.00029687 525.7884205651399 20.17 0.3137 18.535 18.361 18.675 -1.6351 13 8 2 0 0 0 0.70357 1 3079 3079 10.824 2.9138 1 825590 + 17106 21285 11208 11212 17178 17178 0.03899377049060604 GPAQIQSRPP 10 Unmodified _GPAQIQSRPP_ 0 0 0 REV__ENST00000396707.6_1_7:6617123-6618326:+|nuORF REV__ENST00000396707.6_1_7:6617123-6618326:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 525.788173 1049.56179 0.10798 5.6775E-05 -0.25655 -0.00013489 -0.14857 -7.8115E-05 525.7879888361288 18.441 0.38628 18.441 18.23 18.616 0 -0.077315 -0.00010161 NaN 10.824 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1949100 + 17107 21285 11208 11212 0.03899377049060604 GPAQIQSRPP 10 Unmodified _GPAQIQSRPP_ 0 0 0 REV__ENST00000396707.6_1_7:6617123-6618326:+|nuORF REV__ENST00000396707.6_1_7:6617123-6618326:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 525.788173 1049.56179 0.085855 4.5141E-05 -0.29327 -0.0001542 -0.20741 -0.00010905 525.7879597128173 19.986 0.41382 18.589 18.309 18.723 -1.3966 0.070758 -0.00014022 NaN 10.824 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 940620 + 17108 21285 11208 11212 0.03899377049060604 GPAQIQSRPP 10 Unmodified _GPAQIQSRPP_ 0 0 0 REV__ENST00000396707.6_1_7:6617123-6618326:+|nuORF REV__ENST00000396707.6_1_7:6617123-6618326:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 525.788173 1049.56179 -0.62212 -0.0003271 0.05798 3.0485E-05 -0.56414 -0.00029662 525.7881631956254 19.834 0.38449 18.509 18.279 18.664 -1.3251 -0.0095798 0.00022914 NaN 10.824 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1205100 + 17109 21285 11208 11212 0.03899377049060604 GPAQIQSRPP 10 Unmodified _GPAQIQSRPP_ 0 0 0 REV__ENST00000396707.6_1_7:6617123-6618326:+|nuORF REV__ENST00000396707.6_1_7:6617123-6618326:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 525.788173 1049.56179 -0.85265 -0.00044831 0.28803 0.00015144 -0.56462 -0.00029687 525.7884205651399 20.17 0.3137 18.535 18.361 18.675 -1.6351 0.016137 0.00047106 NaN 10.824 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 825590 + 17110 21285 11208 11212 0.03899377049060604 GPAQPPPPAPY 11 Unmodified _GPAQPPPPAPY_ 0 0 0 REV__ENST00000553976.1_1_14:55529677-55530620:+|nuORF REV__ENST00000553976.1_1_14:55529677-55530620:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7822265625 2 546.279649 1090.54475 0.36629 0.00020009 -1.5022 -0.0008206 -1.1359 -0.0006205 546.2791742744212 29.886 0.73153 27.993 27.685 28.416 -1.8928 63 20 4 0 0 0 0.77391 1 5089 5089 6.7232 0.51738 1 2317100 + 17111 18004 11209 11213 17179 17179 0.003094564432331026 GPAQPPPPAPY 11 Unmodified _GPAQPPPPAPY_ 0 0 0 REV__ENST00000553976.1_1_14:55529677-55530620:+|nuORF REV__ENST00000553976.1_1_14:55529677-55530620:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.279649 1090.54475 0.37814 0.00020657 -1.4166 -0.00077386 -1.0385 -0.00056729 546.2789873411305 28.229 0.55243 28.229 27.939 28.491 0 0.22058 2.0987E-05 NaN 6.7232 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1345200 + 17112 18004 11209 11213 0.003094564432331026 GPAQPPPPAPY 11 Unmodified _GPAQPPPPAPY_ 0 0 0 REV__ENST00000553976.1_1_14:55529677-55530620:+|nuORF REV__ENST00000553976.1_1_14:55529677-55530620:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.279649 1090.54475 0.73408 0.00040101 -1.6792 -0.00091732 -0.94514 -0.00051631 546.2789400596555 29.983 0.73039 27.866 27.528 28.259 -2.1167 -0.1417 -0.00026594 NaN 6.7232 52 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1814100 + 17113 18004 11209 11213 0.003094564432331026 GPAQPPPPAPY 11 Unmodified _GPAQPPPPAPY_ 0 0 0 REV__ENST00000553976.1_1_14:55529677-55530620:+|nuORF REV__ENST00000553976.1_1_14:55529677-55530620:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.279649 1090.54475 0.62904 0.00034363 -1.225 -0.00066917 -0.59591 -0.00032553 546.2790295279094 30.018 0.70252 27.944 27.624 28.326 -2.0743 -0.064414 0.00023037 NaN 6.7232 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1301100 + 17114 18004 11209 11213 0.003094564432331026 GPAQVDTEV 9 Unmodified _GPAQVDTEV_ 0 0 0 REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23583984375 2 458.224539 914.434526 -0.012695 -5.8172E-06 0.41594 0.00019059 0.40324 0.00018478 458.22490999706287 50.622 0.51848 47.577 47.356 47.875 -3.0453 21 14 2 0 0 0 0.79204 1 9235 9235 7.2892 0 1 503700 + 17115 12988 11210 11214 17180 17180 -0.026113886158100286 GPARSYPAT 9 Unmodified _GPARSYPAT_ 0 0 0 ENST00000588559.5_1_19:55705613-55720813:-|nuORF;nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH ENST00000588559.5_1_19:55705613-55720813:-|nuORF ENST00000588559.5_1_19:55705613-55720813:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23480224609375 2 460.235242 918.45593 0.072592 3.341E-05 0.07648 3.5199E-05 0.14907 6.8609E-05 460.2353432819689 58.086 0.58355 54.881 54.579 55.163 -3.2052 21 16 2 0 0 0 0.60805 1 10890 10890 12.532 0.89125 1 647520 17116 1606 11211 11215 17181 17181 -0.006559587964375169 GPARYCYVGF 10 Unmodified _GPARYCYVGF_ 0 0 0 REV__ENSG00000187664|ENST00000291481|HAPLN4 REV__ENSG00000187664|ENST00000291481|HAPLN4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 566.951904296875 2 566.765852 1131.51715 NaN NaN NaN NaN NaN NaN NaN 168.98 1 164.19 163.69 164.69 -4.7898 0 0 0 0.22588 1 34194 34194 7.9102 1.7044 1 + 17117 19103 11212 11216 17182 17182 -0.04334770088644291 GPASFLWAA 9 Unmodified _GPASFLWAA_ 0 0 0 ITGB8|p.F180Sfs*37|1|0.12|ENSG00000105855|chr7:20379197-20379197|T/-|frameshift_variant;ENSG00000105855|ENST00000222573|ITGB8 ITGB8|p.F180Sfs*37|1|0.12|ENSG00000105855|chr7:20379197-20379197|T/-|frameshift_variant ITGB8|p.F180Sfs*37|1|0.12|ENSG00000105855|chr7:20379197-20379197|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2376403808594 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 33.774 1 31.457 30.957 31.957 -2.3175 0 0 0 0.23508 1 6185 6185 7.9102 0 1 17118 2349 11213 11217 17183 17183 -0.002538693027190675 GPASQCRH 8 Unmodified _GPASQCRH_ 0 0 0 REV__ENST00000299106.8_2_11:134020206-134020518:+|nuORF REV__ENST00000299106.8_2_11:134020206-134020518:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 428.1410827636719 2 428.198136 854.381719 NaN NaN NaN NaN NaN NaN NaN 23.663 1 22.209 21.709 22.709 -1.4535 0 0 0 0.21486 1 3828 3828 6.3541 0 1 + 17119 20389 11214 11218 17184 17184 -0.05129625159599982 GPATHTALPP 10 Unmodified _GPATHTALPP_ 0 0 0 nc|ENSG00000239732|Q9NR96-3|TLR9 nc|ENSG00000239732|Q9NR96-3|TLR9 nc|ENSG00000239732|Q9NR96-3|TLR9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2438659667969 2 481.258717 960.50288 NaN NaN NaN NaN NaN NaN NaN 44.914 1 42.124 41.624 42.624 -2.79 0 0 0 0.22588 1 8451 8451 10.824 0.75 1 17120 12617 11215 11219 17185 17185 0.021049007546935172 GPATHTWCDLC 11 Unmodified _GPATHTWCDLC_ 0 0 0 nc|ENSG00000068028|Q9NS23-6|RASSF1;ENST00000488024.1_1_3:50374973-50378236:-|nuORF;nc|ENSG00000068028|Q9NS23-7|RASSF1;ENST00000478619.1_1_3:50375203-50378236:-|nuORF;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1 nc|ENSG00000068028|Q9NS23-6|RASSF1 nc|ENSG00000068028|Q9NS23-6|RASSF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2807006835938 2 602.249708 1202.48486 NaN NaN NaN NaN NaN NaN NaN 78.132 1 74.366 73.866 74.866 -3.7664 0 0 0 0.23199 1 14811 14811 6.7232 1.4925 1 17121 1399 11216 11220 17186 17186 -0.10827925553962814 GPATLKPQVQP 11 Unmodified _GPATLKPQVQP_ 0 0 0 MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant;MYO15A|p.E2245Kfs*8|1|0.44|ENSG00000091536|chr17:18148533-18148533|G/-|frameshift_variant;ENSG00000091536|ENST00000647165|MYO15A;ENST00000583079.1_1_17:18023566-18025792:+|nuORF MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 568.1712646484375 2 568.327131 1134.63971 NaN NaN NaN NaN NaN NaN NaN 174.07 1 169.18 168.68 169.68 -4.8916 0 0 0 0.22595 1 34636 34636 11.495 0.67078 1 17122 1811 11217 11221 17187 17187 0.07777389914417654 GPATPSPKGAP 11 Unmodified _GPATPSPKGAP_ 0 0 0 ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2640075683594 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 0.25905 1 11130 11130 1.4074 0 1 39769000 17123 7279 11218 11222 17188 17188 0.023328834091330464 GPCCGAGG 8 Unmodified _GPCCGAGG_ 0 0 0 CON__P04258;ZNF513|p.P138L|1|0.38|ENSG00000163795|chr2:27378853-27378853|G/A|missense_variant;ZNF513|p.T233Lfs*42|1|0.39|ENSG00000163795|chr2:27378570-27378570|G/-|frameshift_variant;nc|ENSG00000163795|Q8N8E2-2|ZNF513;ENSG00000163795|ENST00000323703|ZNF513 CON__P04258 CON__P04258 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.1097717285156 2 311.10961 620.204666 NaN NaN NaN NaN NaN NaN NaN 144.23 1 144.23 143.73 144.73 0 0 0 0 0.21486 1 28811 28811 2.8892 0 1 + 17124 657 11219 11223 17189 17189 -0.12062797034093364 GPCMWEHQCL 10 Unmodified _GPCMWEHQCL_ 0 0 0 REV__ZSCAN32|p.Q224H|1|0.23|ENSG00000140987|chr16:3390089-3390089|T/A|missense_variant REV__ZSCAN32|p.Q224H|1|0.23|ENSG00000140987|chr16:3390089-3390089|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2828369140625 2 602.240829 1202.46711 NaN NaN NaN NaN NaN NaN NaN 84.614 1 80.705 80.205 81.205 -3.9093 0 0 0 0.22588 1 16084 16084 4.3292 0.38484 1 + 17125 25598 11220 11224 17190 17190 -0.12602964080451784 GPDAAGPD 8 Unmodified _GPDAAGPD_ 0 0 0 ENSG00000108582|ENST00000225719|CPD;CPD|p.I467Nfs*3|1|0.33|ENSG00000108582|chr17:30422763-30422764|-/A|frameshift_variant ENSG00000108582|ENST00000225719|CPD ENSG00000108582|ENST00000225719|CPD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.07806396484375 2 350.150843 698.287133 NaN NaN NaN NaN NaN NaN NaN 21.183 1 19.709 19.209 20.209 -1.4742 0 0 0 0.21486 1 3572 3572 0.79363 0 1 17126 2487 11221 11225 17191 17191 -0.0740786042996433 GPDQRPFL 8 Unmodified _GPDQRPFL_ 0 0 0 ENST00000328969.5_1_20:62340221-62340320:+|nuORF ENST00000328969.5_1_20:62340221-62340320:+|nuORF ENST00000328969.5_1_20:62340221-62340320:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2452087402344 2 465.245609 928.476666 0.0041653 1.9379E-06 0.21099 9.8164E-05 0.21516 0.0001001 465.24562683793823 51.508 0.80326 48.463 48.084 48.888 -3.0453 42 22 2 0 0 0 0.71273 1 9403 9403 12.532 0 1 3678000 17127 8762 11222 11226 17192 17192 0.009566315832444161 GPEDALVTEL 10 Unmodified _GPEDALVTEL_ 0 0 0 REV__nc|ENSG00000123338|P55160-2|NCKAP1L REV__nc|ENSG00000123338|P55160-2|NCKAP1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2667236328125 2 522.266404 1042.51826 0.36038 0.00018821 0.68868 0.00035968 1.0491 0.00054789 522.2668709155978 98.572 0.73308 98.572 98.123 98.856 0 31 20 2 0 0 0 0.664 1 19295 19295 14.838 0 1 1788400 + 17128 15723 11223 11227 17193 17193 -0.001302772387589357 GPEDALVTEL 10 Unmodified _GPEDALVTEL_ 0 0 0 REV__nc|ENSG00000123338|P55160-2|NCKAP1L REV__nc|ENSG00000123338|P55160-2|NCKAP1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2671508789062 2 522.266404 1042.51826 0.57466 0.00030013 0.46746 0.00024414 1.0421 0.00054427 522.2666994336855 102.47 0.58334 98.447 98.15 98.733 -4.0212 30 16 2 0 0 0 0.664 1 19703 19703 14.838 0 1 1378700 + 17129 15723 11223 11227 17194 17194 -0.001302772387589357 GPEELGKIL 9 Unmodified _GPEELGKIL_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72503662109375 2 478.276575 954.538597 0.096023 4.5926E-05 0.02902 1.388E-05 0.12504 5.9805E-05 478.2765174580509 98.685 1.0045 98.685 98.157 99.161 0 88 28 4 0 0 0 0.029966 2 19310 19310;19394 81.613 13.532 1 51236000 17130 1480 11224 11228 17195;17196 17195 0.05950938211731227 GPEELGKIL 9 Unmodified _GPEELGKIL_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7398986816406 2 478.276575 954.538597 0.27573 0.00013188 -0.20179 -9.6513E-05 0.073938 3.5363E-05 478.27640442253073 102.72 1.0476 98.403 97.906 98.954 -4.3208 89 29 4 0 0 0 0.029966 2 19662 19662;19689 81.613 13.532 1 32853000 17131 1480 11224 11228 17197;17198 17197 0.05950938211731227 GPEEPLPLGNT 11 Unmodified _GPEEPLPLGNT_ 0 0 0 ENST00000482990.1_1_2:27479185-27480240:-|nuORF;ENST00000497341.5_1_2:27478182-27480240:-|nuORF;ENSG00000115194|ENST00000233535|SLC30A3 ENST00000482990.1_1_2:27479185-27480240:-|nuORF ENST00000482990.1_1_2:27479185-27480240:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 376.1871337890625 3 375.192511 1122.5557 -0.95996 -0.00036017 1.0138 0.00038036 0.053813 2.019E-05 375.19271904659746 24.419 0.61763 22.566 22.329 22.947 -1.8534 63 17 4 0 0 0 0.65515 1 4016 4016 3.0723 0 1 10144000 17132 2827 11225 11229 17199 17199 -0.0006718597312556085 GPEFSDFY 8 Unmodified _GPEFSDFY_ 0 0 0 REV__ENSG00000177917|ENST00000326446|ARL6IP6 REV__ENSG00000177917|ENST00000326446|ARL6IP6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2315368652344 2 481.200533 960.386513 -0.33605 -0.00016171 2.3786 0.0011446 2.0426 0.0009829 481.201370171508 18.658 0.17599 17.333 17.222 17.398 -1.3251 7 4 2 0 0 0 1.0244 1 2801 2801 2.8892 0 1 389840 + 17133 18581 11226 11230 17200 17200 -0.09526462535848168 GPEGTPPSRG 10 Unmodified _GPEGTPPSRG_ 0 0 0 ENSG00000177303|ENST00000321617|CASKIN2;nc|ENSG00000177303|Q8WXE0-2|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7383117675781 2 477.735606 953.456658 0.028965 1.3838E-05 -0.42664 -0.00020382 -0.39767 -0.00018998 477.7353892071314 24.884 0.58579 23.35 23.094 23.68 -1.5342 49 16 4 0 0 0 0.59928 1 4098 4098 19.257 4.4187 1 19758000 17134 6506 11227 11231 17201 17201 -0.02193164147377047 GPFGGRHGG 9 Unmodified _GPFGGRHGG_ 0 0 0 REV__FZD1|p.G265Afs*143|1|0.55|ENSG00000157240|chr7:91265669-91265669|G/-|frameshift_variant REV__FZD1|p.G265Afs*143|1|0.55|ENSG00000157240|chr7:91265669-91265669|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 422.71185302734375 2 421.206818 840.399084 -0.57114 -0.00024057 -0.5198 -0.00021894 -1.0909 -0.00045951 421.2065438842044 36.752 0.7664 34.284 33.941 34.708 -2.4688 59 21 4 0 0 0 0.45972 1 6788 6788 8.1555 1.5252 1 12506000 + 17135 17289 11228 11232 17202 17202 -0.02749961562290082 GPFGGRHGG 9 Unmodified _GPFGGRHGG_ 0 0 0 REV__FZD1|p.G265Afs*143|1|0.55|ENSG00000157240|chr7:91265669-91265669|G/-|frameshift_variant REV__FZD1|p.G265Afs*143|1|0.55|ENSG00000157240|chr7:91265669-91265669|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 421.206818 840.399084 0.074795 3.1504E-05 -1.2143 -0.00051148 -1.1395 -0.00047997 421.2062639075257 34.672 0.88943 34.672 34.278 35.168 0 0.22936 -0.00013166 NaN 8.1555 65 25 3 NaN NaN NaN NaN 0 NaN NaN 0 15010000 + 17136 17289 11228 11232 -0.02749961562290082 GPFGGRHGG 9 Unmodified _GPFGGRHGG_ 0 0 0 REV__FZD1|p.G265Afs*143|1|0.55|ENSG00000157240|chr7:91265669-91265669|G/-|frameshift_variant REV__FZD1|p.G265Afs*143|1|0.55|ENSG00000157240|chr7:91265669-91265669|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 421.206818 840.399084 -0.57114 -0.00024057 -0.5198 -0.00021894 -1.0909 -0.00045951 421.2065438842044 36.752 0.7664 34.284 33.941 34.708 -2.4688 -0.15893 0.00045341 NaN 8.1555 59 21 4 NaN NaN NaN NaN 0 NaN NaN 0 12506000 + 17137 17289 11228 11232 -0.02749961562290082 GPFGGRHGG 9 Unmodified _GPFGGRHGG_ 0 0 0 REV__FZD1|p.G265Afs*143|1|0.55|ENSG00000157240|chr7:91265669-91265669|G/-|frameshift_variant REV__FZD1|p.G265Afs*143|1|0.55|ENSG00000157240|chr7:91265669-91265669|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 421.206818 840.399084 0.08254 3.4766E-05 -1.2033 -0.00050682 -1.1207 -0.00047205 421.2062675068733 36.763 0.78306 34.415 34.073 34.856 -2.3479 -0.027934 -0.00012234 NaN 8.1555 54 22 3 NaN NaN NaN NaN 0 NaN NaN 0 11881000 + 17138 17289 11228 11232 -0.02749961562290082 GPFGGRHGG 9 Unmodified _GPFGGRHGG_ 0 0 0 REV__FZD1|p.G265Afs*143|1|0.55|ENSG00000157240|chr7:91265669-91265669|G/-|frameshift_variant REV__FZD1|p.G265Afs*143|1|0.55|ENSG00000157240|chr7:91265669-91265669|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 421.206818 840.399084 -0.05181 -2.1823E-05 -1.1472 -0.00048321 -1.199 -0.00050503 421.2062962324795 36.738 0.88438 34.4 34.027 34.911 -2.3375 -0.042495 -7.5123E-05 NaN 8.1555 59 24 4 NaN NaN NaN NaN 0 NaN NaN 0 9229100 + 17139 17289 11228 11232 -0.02749961562290082 GPFPLVLCPH 10 Unmodified _GPFPLVLCPH_ 0 0 0 ENST00000244670.12_1_6:42988531-42988804:+|nuORF ENST00000244670.12_1_6:42988531-42988804:+|nuORF ENST00000244670.12_1_6:42988531-42988804:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.270263671875 2 540.288963 1078.56337 0.41914 0.00022646 0.078481 4.2403E-05 0.49762 0.00026886 540.2889454730002 101.47 0.65086 97.152 96.856 97.507 -4.3208 46 18 3 0 0 0 0.36162 1 19434 19434 16.275 16.275 1 7471300 17140 8201 11229 11233 17203 17203 0.027232948134496837 GPGCSGGP 8 Unmodified _GPGCSGGP_ 0 0 0 REV__ENST00000316027.10_1_22:18593485-18593599:+|nuORF REV__ENST00000316027.10_1_22:18593485-18593599:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7518310546875 1 631.250437 630.24316 0.38933 0.00024576 -2.9119 -0.0018381 -2.5226 -0.0015924 631.2521576537147 97.391 0.098801 93.156 93.09 93.189 -4.2348 4 2 2 0 0 0 1.028 1 18597 18597 0.79363 0 1 325810 + 17141 20523 11230 11234 17204 17204 -0.0867516812793383 GPGDKQKSY 9 Unmodified _GPGDKQKSY_ 0 0 0 nc|ENSG00000162641|Q5T1N1-3|AKNAD1;AKNAD1|p.N719Kfs*23|1|0.16|ENSG00000162641|chr1:108823380-108823381|-/T|frameshift_variant;nc|ENSG00000162641|Q5T1N1-4|AKNAD1;ENSG00000162641|ENST00000370001|AKNAD1;AKNAD1|p.K314Nfs*22|1|0.2|ENSG00000162641|chr1:108851723-108851723|T/-|frameshift_variant;nc|ENSG00000162641|Q5T1N1-2|AKNAD1 nc|ENSG00000162641|Q5T1N1-3|AKNAD1 nc|ENSG00000162641|Q5T1N1-3|AKNAD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2678527832031 2 490.245806 978.47706 0.395 0.00019365 0.072441 3.5514E-05 0.46744 0.00022916 490.2458813713439 41.947 0.7678 41.947 41.583 42.351 0 44 21 3 0 0 0 0.28156 1 7846 7846 48.346 3.9388 1 9503100 17142 113 11231 11235 17205 17205 -0.013039934875791914 GPGFKEFSRG 10 Unmodified _GPGFKEFSRG_ 0 0 0 REV__CCDC38|p.M394Cfs*7|1|0.3|ENSG00000165972|chr12:95878309-95878309|T/-|frameshift_variant REV__CCDC38|p.M394Cfs*7|1|0.3|ENSG00000165972|chr12:95878309-95878309|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2730712890625 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 139.66 1 139.66 139.16 140.16 0 0 0 0 2.8426 1 27773 27773 6.6304 0.39602 1 + 17143 13297 11232 11236 17206 17206 -0.0018031184229130304 GPGGRQSY 8 Unmodified _GPGGRQSY_ 0 0 0 REV__nc|ENSG00000271793|O60506-5|SYNCRIP REV__nc|ENSG00000271793|O60506-5|SYNCRIP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.1076965332031 2 411.198659 820.382765 NaN NaN NaN NaN NaN NaN NaN 53.681 1 50.585 50.085 51.085 -3.0954 0 0 0 0.21486 1 9923 9923 6.3541 0.59368 1 + 17144 16257 11233 11237 17207 17207 -0.03461087519042394 GPGLQHIAFIQ 11 Unmodified _GPGLQHIAFIQ_ 0 0 0 REV__NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant REV__NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2530517578125 2 590.827298 1179.64004 0.3523 0.00020815 1.1461 0.00067713 1.4984 0.00088528 591.3309784029387 79.778 0.24286 75.974 75.898 76.141 -3.8048 8 6 2 0 0 0 0.86301 1 15144 15144 11.495 5.2889 1 752230 + 17145 23919 11234 11238 17208 17208 0.0574080963428969 GPGPGPIH 8 Unmodified _GPGPGPIH_ 0 0 0 ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 366.1949157714844 2 366.195388 730.376223 NaN NaN NaN NaN NaN NaN NaN 29.17 1 29.17 28.67 29.67 0 0 0 0 0.23294 1 5202 5202 0.62683 0 1 17146 7880 11235 11239 17209 17209 0.00025019320230512676 GPGPQLGTF 9 Unmodified _GPGPQLGTF_ 0 0 0 REV__ENST00000601593.5_3_19:58445233-58446731:-|nuORF REV__ENST00000601593.5_3_19:58445233-58446731:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23602294921875 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 30.594 1 28.701 28.201 29.201 -1.8928 0 0 0 0.23411 1 5252 5252 13.508 4.1604 1 + 17147 23420 11236 11240 17210 17210 -0.0021045968236421686 GPGPSGSWPRP 11 Unmodified _GPGPSGSWPRP_ 0 0 0 REV__ENST00000382985.8_1_14:21458178-21458429:+|nuORF REV__ENST00000382985.8_1_14:21458178-21458429:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7886962890625 2 547.772522 1093.53049 0.41285 0.00022615 -1.2389 -0.00067862 -0.82603 -0.00045248 547.7715138580604 89.588 0.53417 85.543 85.276 85.81 -4.0443 25 14 2 0 0 0 0.85028 1 17046 17046 17.113 10.011 1 1752500 + 17148 21183 11237 11241 17211 17211 -0.01253195985077582 GPGRVYGRRW 10 Unmodified _GPGRVYGRRW_ 0 0 0 nc|ENSG00000138463|Q96SL1-2|SLC49A4;ENSG00000138463|ENST00000261038|SLC49A4 nc|ENSG00000138463|Q96SL1-2|SLC49A4 nc|ENSG00000138463|Q96SL1-2|SLC49A4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.29931640625 2 602.328331 1202.64211 NaN NaN NaN NaN NaN NaN NaN 81.189 1 77.35 76.85 77.85 -3.8392 0 0 0 0.22588 1 15412 15412 3.9444 0.3479 1 17149 4175 11238 11242 17212 17212 0.04889283162742686 GPGSPPPY 8 Unmodified _GPGSPPPY_ 0 0 0 nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;PTK7|p.S690L|1|0.72|ENSG00000112655|chr6:43143438-43143438|C/T|missense_variant;ENST00000493339.1_1_6:43111066-43112355:+|nuORF;ENST00000487673.5_1_6:43111066-43128616:+|nuORF nc|ENSG00000112655|Q13308-5|PTK7 nc|ENSG00000112655|Q13308-5|PTK7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 385.8695983886719 2 386.187229 770.359904 NaN NaN NaN NaN NaN NaN NaN 16.726 1 15.454 14.954 15.954 -1.2722 0 0 0 0.2396 1 2422 2422 0.12286 0 1 17150 2703 11239 11243 17213 17213 -0.03446106636533841 GPGTHYHAT 9 Unmodified _GPGTHYHAT_ 0 0 0 REV__nc|ENSG00000120253|Q8NFH3-2|NUP43 REV__nc|ENSG00000120253|Q8NFH3-2|NUP43 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.180908203125 3 314.147236 939.419879 NaN NaN NaN NaN NaN NaN NaN 41.527 1 38.893 38.393 39.393 -2.6348 0 0 0 0.23508 1 7756 7756 1.1933 0 1 + 17151 15614 11240 11244 17214 17214 -0.05225415973291092 GPGWRWRPG 9 Unmodified _GPGWRWRPG_ 0 0 0 ENST00000360001.10_1_1:1164082-1164292:-|nuORF ENST00000360001.10_1_1:1164082-1164292:-|nuORF ENST00000360001.10_1_1:1164082-1164292:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.07305908203125 3 356.854387 1067.54133 0.60123 0.00021455 4.3389 0.0015483 4.9401 0.0017629 357.1896285377424 23.79 0.37986 22.237 22.012 22.392 -1.5532 17 10 2 0 0 0 0.87918 1 4082 4082 2.7352 1.6637 1 534500 17152 9008 11241 11245 17215 17215 0.0102625117988282 GPGWRWRPG 9 Unmodified _GPGWRWRPG_ 0 0 0 ENST00000360001.10_1_1:1164082-1164292:-|nuORF ENST00000360001.10_1_1:1164082-1164292:-|nuORF ENST00000360001.10_1_1:1164082-1164292:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 356.854387 1067.54133 -1.029 -0.0003672 6.1467 0.0021935 5.1177 0.0018263 357.1902497535242 23.979 0.34471 22.19 21.98 22.324 -1.7886 -0.023097 0.00095508 NaN 2.7352 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 374960 17153 9008 11241 11245 0.0102625117988282 GPGYPAPPPPP 11 Unmodified _GPGYPAPPPPP_ 0 0 0 REV__ENSG00000171201|ENST00000304915|SMR3B REV__ENSG00000171201|ENST00000304915|SMR3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6860961914062 2 523.768917 1045.52328 0.30541 0.00015997 3.3715 0.0017659 3.6769 0.0019258 523.7707362557848 27.874 1.1524 25.877 25.644 26.797 -1.9962 60 32 2 0 0 0 0.51365 1 4742 4742 28.487 4.4663 1 6456700 + 17154 18209 11242 11246 17216 17216 0.0023407141452480573 GPGYPAPPPPP 11 Unmodified _GPGYPAPPPPP_ 0 0 0 REV__ENSG00000171201|ENST00000304915|SMR3B REV__ENSG00000171201|ENST00000304915|SMR3B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.768917 1045.52328 0.70327 0.00036835 4.6506 0.0024358 5.3538 0.0028042 523.7718114070032 27.776 0.73173 25.993 25.737 26.469 -1.7821 0.031111 -0.00071294 NaN 28.487 39 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6627900 + 17155 18209 11242 11246 0.0023407141452480573 GPHACDLGR 9 Unmodified _GPHACDLGR_ 0 0 0 REV__nc|ENSG00000197696|P08949-2|NMB REV__nc|ENSG00000197696|P08949-2|NMB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 309.8172912597656 3 309.148471 924.423584 0.052067 1.6096E-05 -0.57639 -0.00017819 -0.52432 -0.00016209 309.1483153233475 52.532 0.462 49.444 49.334 49.796 -3.0876 17 12 2 0 0 0 0.60489 1 9677 9677 2.4985 0.41452 1 502290 + 17156 24231 11243 11247 17217 17217 -0.04165069471071092 GPHQLGKI 8 Unmodified _GPHQLGKI_ 0 0 0 ENST00000509848.5_3_5:72922113-73045687:+|nuORF ENST00000509848.5_3_5:72922113-73045687:+|nuORF ENST00000509848.5_3_5:72922113-73045687:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2507019042969 2 425.250695 848.486836 -0.09931 -4.2232E-05 0.63369 0.00026948 0.53438 0.00022724 425.25087954092646 60.953 0.41636 57.729 57.597 58.013 -3.2237 14 11 2 0 0 0 8448 1 11446 11446 1.3295 0 1 750560 17157 10737 11244 11248 17218 17218 0.05653239308492175 GPHRPTMNMY 10 Unmodified _GPHRPTMNMY_ 0 0 0 REV__CD28|p.R198H|1|0.45|ENSG00000178562|chr2:203734842-203734842|G/A|missense_variant REV__CD28|p.R198H|1|0.45|ENSG00000178562|chr2:203734842-203734842|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2747802734375 2 602.273518 1202.53248 NaN NaN NaN NaN NaN NaN NaN 43.075 1 40.424 39.924 40.924 -2.651 0 0 0 0.22588 1 7768 7768 10.824 0.75 1 + 17158 13332 11245 11249 17219 17219 -0.06068226563093049 GPICLVAHNGF 11 Unmodified _GPICLVAHNGF_ 0 0 0 ENSG00000183479|ENST00000370231|TREX2;nc|ENSG00000183479|Q9BQ50-1|TREX2 ENSG00000183479|ENST00000370231|TREX2 ENSG00000183479|ENST00000370231|TREX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 564.3079833984375 2 564.286951 1126.55935 0.171 9.6494E-05 -0.74256 -0.00041902 -0.57156 -0.00032252 564.2866625266446 171.82 0.27556 166.9 166.76 167.03 -4.9149 13 7 2 0 0 0 0.6445 1 34016 34016 0.0059557 0 1 10999000 17159 6849 11246 11250 17220 17220 0.0011320531971250603 GPIDTLIFYI 10 Unmodified _GPIDTLIFYI_ 0 0 0 REV__ENSG00000167360|ENST00000300778|OR51Q1 REV__ENSG00000167360|ENST00000300778|OR51Q1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3229370117188 2 576.320983 1150.62741 NaN NaN NaN NaN NaN NaN NaN 125.09 1 120.44 119.94 120.94 -4.6495 0 0 0 2.8426 1 24067 24067 0.84494 0.63761 1 + 17160 17920 11247 11251 17221 17221 0.05812353451369745 GPIETTKI 8 Unmodified _GPIETTKI_ 0 0 0 REV__nc|ENSG00000164035|Q9ULC0-2|EMCN REV__nc|ENSG00000164035|Q9ULC0-2|EMCN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 431.25189208984375 2 429.750193 857.485833 -0.16442 -7.0661E-05 -0.02829 -1.2157E-05 -0.19271 -8.2818E-05 429.75010972891164 93.22 0.93394 89.376 88.85 89.784 -3.844 72 26 4 0 0 0 8448 1 17884 17884 10.074 0 1 15586000 + 17161 13806 11248 11252 17222 17222 0.05138980148888095 GPKDYNNL 8 Unmodified _GPKDYNNL_ 0 0 0 REV__nc|ENSG00000188157|O00468-2|AGRN REV__nc|ENSG00000188157|O00468-2|AGRN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2404479980469 2 460.727249 919.439946 0.27495 0.00012668 0.34923 0.0001609 0.62418 0.00028758 460.7275841319771 26.558 0.31123 26.558 26.426 26.737 0 14 8 2 0 0 0 0.97994 1 4675 4675 5.7604 0 1 587910 + 17162 24216 11249 11253 17223 17223 -0.022996650333311663 GPKFKMPDVHF 11 Unmodified _GPKFKMPDVHF_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.89105224609375 3 434.893631 1301.65906 NaN NaN NaN NaN NaN NaN NaN 37.764 1 35.296 34.796 35.796 -2.4688 0 0 0 0.23698 1 6982 6982 1.4551 0 1 17163 3339 11250 11254 17224 17224 0.02030022933672626 GPKFRGFR 8 Unmodified _GPKFRGFR_ 0 0 0 REV__ENSG00000033030|ENST00000633063|ZCCHC8 REV__ENSG00000033030|ENST00000633063|ZCCHC8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.2329406738281 3 322.187366 963.540269 NaN NaN NaN NaN NaN NaN NaN 16.745 1 15.529 15.029 16.029 -1.2159 0 0 0 0.21486 1 2651 2651 3.5965 1.9439 1 + 17164 14018 11251 11255 17225 17225 0.057040368109937845 GPKFVTDCAK 10 Unmodified _GPKFVTDCAK_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2752685546875 2 533.273509 1064.53247 NaN NaN NaN NaN NaN NaN NaN 13.514 1 13.514 13.014 14.014 0 0 0 0 0.22588 1 1955 1955 6.2058 1.4498 1 + 17165 17221 11252 11256 17226 17226 0.0027809670850729162 GPKQQKEIA 9 Unmodified _GPKQQKEIA_ 0 0 0 ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 334.0341796875 3 333.525825 997.555644 0.21913 7.3086E-05 -0.26652 -8.8892E-05 -0.04739 -1.5806E-05 333.52572095119655 33.661 0.51907 31.514 31.222 31.742 -2.1468 23 14 3 0 0 0 0.8825 1 5876 5876 1.0715 0.20709 1 1188700 17166 11077 11253 11257 17227 17227 0.05676858817514585 GPKQQKEIA 9 Unmodified _GPKQQKEIA_ 0 0 0 ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 333.525825 997.555644 -0.29235 -9.7506E-05 -0.21735 -7.2492E-05 -0.5097 -0.00017 333.52586566749727 33.724 0.52926 31.508 31.248 31.777 -2.2158 -0.042326 -0.00026298 NaN 1.0715 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 938310 17167 11077 11253 11257 0.05676858817514585 GPKVPASTAT 10 Unmodified _GPKVPASTAT_ 0 0 0 REV__ENST00000530694.5_1_11:12023362-12031257:-|nuORF REV__ENST00000530694.5_1_11:12023362-12031257:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2397766113281 2 464.758549 927.502546 0.13784 6.4061E-05 -0.022256 -1.0344E-05 0.11558 5.3717E-05 464.75864739350766 34.854 0.48932 32.601 32.254 32.743 -2.2527 22 13 2 0 0 0 0.87854 1 6150 6150 9.3831 0 1 429840 + 17168 14083 11254 11258 17228 17228 0.03589481034839537 GPLAGWSW 8 Unmodified _GPLAGWSW_ 0 0 0 ENST00000448507.5_1_4:7033328-7033451:+|nuORF ENST00000448507.5_1_4:7033328-7033451:+|nuORF ENST00000448507.5_1_4:7033328-7033451:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2171630859375 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 51.75 1 48.698 48.198 49.198 -3.0517 0 0 0 0.21486 1 9539 9539 5.7604 0 1 17169 9958 11255 11259 17229 17229 -0.023224249912573214 GPLASPEHF 9 Unmodified _GPLASPEHF_ 0 0 0 ENST00000568025.1_1_6:166796808-166797144:+|nuORF ENST00000568025.1_1_6:166796808-166797144:+|nuORF ENST00000568025.1_1_6:166796808-166797144:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7415771484375 2 477.737617 953.460681 0.090997 4.3473E-05 0.073136 3.494E-05 0.16413 7.8412E-05 477.7375953232495 147.65 0.64075 142.95 142.63 143.27 -4.7095 43 18 3 0 0 0 0.65439 1 29335 29335 9.3474 0.75416 1 6495400 17170 11390 11256 11260 17230 17230 -0.017910746536699662 GPLASYHM 8 Unmodified _GPLASYHM_ 0 0 0 REV__ENSG00000171532|ENST00000302584|NEUROD2 REV__ENSG00000171532|ENST00000302584|NEUROD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 438.2080993652344 2 438.207638 874.400723 NaN NaN NaN NaN NaN NaN NaN 157.51 1 152.22 151.72 152.72 -5.2854 0 0 0 0.21486 1 30568 30568 11.114 0 1 + 17171 18232 11257 11261 17231 17231 -0.041500885885625394 GPLFNGKPHQ 10 Unmodified _GPLFNGKPHQ_ 0 0 0 ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7711181640625 2 547.790715 1093.56688 0.081859 4.4842E-05 2.9395 0.0016102 3.0214 0.0016551 548.2953104579295 53.955 0.1382 50.82 50.731 50.869 -3.1352 5 3 2 0 0 0 0.71778 1 9923 9923 9.3831 1.473 1 534130 17172 5478 11258 11262 17232 17232 0.02383680911657393 GPLHLRLT 8 Unmodified _GPLHLRLT_ 0 0 0 REV__ENST00000464728.5_1_16:841811-841949:+|nuORF REV__ENST00000464728.5_1_16:841811-841949:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7593688964844 2 453.779619 905.544686 NaN NaN NaN NaN NaN NaN NaN 14.651 1 13.441 12.941 13.941 -1.2106 0 0 0 0.21486 1 1959 1959 0.79363 0 1 + 17173 21941 11259 11263 17233 17233 0.08813501233873922 GPLLLIKNG 9 Unmodified _GPLLLIKNG_ 0 0 0 REV__tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1 REV__tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 309.1526184082031 3 308.867411 923.580402 -0.055113 -1.7023E-05 0.08798 2.7174E-05 0.032867 1.0151E-05 308.86737479397107 41.799 0.98853 39.148 38.653 39.641 -2.651 79 27 4 0 0 0 0.64253 1 7610 7610 0.40827 0 1 13795000 + 17174 24920 11260 11264 17234 17234 0.11555538690902267 GPLLPQPWMC 10 Unmodified _GPLLPQPWMC_ 0 0 0 REV__ENST00000465368.5_1_3:100067688-100071339:+|nuORF REV__ENST00000465368.5_1_3:100067688-100071339:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2148742675781 3 381.189279 1140.54601 NaN NaN NaN NaN NaN NaN NaN 136.33 1 131.69 131.19 132.19 -4.6399 0 0 0 2.8426 1 26901 26901 0.013265 0 1 + 17175 21949 11261 11265 17235 17235 -0.018643687838903134 GPLLPSASLT 10 Unmodified _GPLLPSASLT_ 0 0 0 CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant;CRTC1|p.S572Afs*6|3|0.59|ENSG00000105662|chr19:18777183-18777183|C/-|frameshift_variant;ENSG00000105662|ENST00000321949|CRTC1;nc|ENSG00000105662|Q6UUV9-2|CRTC1;nc|ENSG00000105662|Q6UUV9-3|CRTC1;CRTC1|p.E427Rfs*24|1|0.39|ENSG00000105662|chr19:18768743-18768744|-/C|frameshift_variant;CRTC1|p.P426Qfs*85|1|0.46|ENSG00000105662|chr19:18768744-18768744|C/-|frameshift_variant CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73150634765625 2 478.276575 954.538597 NaN NaN NaN NaN NaN NaN NaN 144.77 1 139.83 139.33 140.33 -4.9445 0 0 0 2.8426 1 27972 27972 0.26539 0 1 17176 727 11262 11266 17236 17236 0.05950938211685752 GPLLTSFIS 9 Unmodified _GPLLTSFIS_ 0 0 0 REV__nc|ENSG00000136824|O95347-2|SMC2 REV__nc|ENSG00000136824|O95347-2|SMC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.171142578125 3 312.179654 933.517133 NaN NaN NaN NaN NaN NaN NaN 113.44 1 109.17 108.67 109.67 -4.2725 0 0 0 0.23508 1 21847 21847 2.9952 0 1 + 17177 16350 11263 11267 17237 17237 0.04771553183002197 GPLPWTRY 8 Unmodified _GPLPWTRY_ 0 0 0 REV__CEP170B|p.H885Tfs*28|2|0.25|ENSG00000099814|chr14:104886886-104886886|C/-|frameshift_variant REV__CEP170B|p.H885Tfs*28|2|0.25|ENSG00000099814|chr14:104886886-104886886|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 331.0096130371094 3 330.511627 988.513051 -0.40512 -0.0001339 1.2401 0.00040987 0.83499 0.00027597 330.5114641540619 23.759 0.96212 23.759 23.409 24.371 0 53 27 5 0 0 0 1.0276 1 4011 4011 0.45834 0.45834 1 2115400 + 17178 13377 11264 11268 17238 17238 0.018335084799446122 GPMKSCCCK 9 Unmodified _GPMKSCCCK_ 0 0 0 REV__FBN2|p.D2138Tfs*111|3|0.3|ENSG00000138829|chr5:128290765-128290765|C/-|frameshift_variant REV__FBN2|p.D2138Tfs*111|3|0.3|ENSG00000138829|chr5:128290765-128290765|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7237548828125 2 478.694669 955.374785 NaN NaN NaN NaN NaN NaN NaN 148.23 1 143.52 143.02 144.02 -4.7095 0 0 0 0.23508 1 29431 29431 8.5933 2.2392 1 + 17179 16497 11265 11269 17239 17239 -0.10468765418352177 GPMNRAPTP 9 Unmodified _GPMNRAPTP_ 0 0 0 AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.15972900390625 3 314.160488 939.459635 NaN NaN NaN NaN NaN NaN NaN 57.149 1 53.96 53.46 54.46 -3.1895 0 0 0 0.23508 1 10606 10606 1.1933 0.12188 1 17180 150 11266 11270 17240 17240 -0.012516122942315633 GPNHAVVSRK 10 Unmodified _GPNHAVVSRK_ 0 0 0 CON__Q29443;CON__Q0IIK2 CON__Q29443 CON__Q29443 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2692260742188 2 532.801614 1063.58868 -0.025585 -1.3632E-05 1.2938 0.00068932 1.2682 0.00067569 532.8023819973986 49.172 0.31003 46.165 46.035 46.345 -3.0068 13 8 2 0 0 0 0.86078 1 9029 9029 17.113 1.2657 1 862260 + 17181 679 11267 11271 17241 17241 0.05942485660239072 GPPAPPASNPG 11 Unmodified _GPPAPPASNPG_ 0 0 0 ENST00000303212.2_1_19:5824142-5828303:+|nuORF ENST00000303212.2_1_19:5824142-5828303:+|nuORF ENST00000303212.2_1_19:5824142-5828303:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2411804199219 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 32.634 1 32.634 32.134 33.134 0 0 0 0 0.21257 1 5935 5935 15.847 1.9411 1 17182 8582 11268 11272 17242 17242 -0.015319761420073519 GPPGTKKLVY 10 Unmodified _GPPGTKKLVY_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;DNAH17|p.G2596Afs*13|1|0.33|ENSG00000187775|chr17:78479600-78479600|G/-|frameshift_variant;ENST00000586052.5_1_17:76475094-76487566:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 353.87225341796875 3 353.878087 1058.61243 NaN NaN NaN NaN NaN NaN NaN 29.276 1 29.276 28.776 29.776 0 0 0 0 0.22588 1 5225 5225 2.086 0.63089 1 17183 7127 11269 11273 17243 17243 0.08546906374044738 GPPKKILV 8 Unmodified _GPPKKILV_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2;TTYH3-ADSSL1|1|fusion;ENSG00000185100|ENST00000330877|ADSS1;nc|ENSG00000185100|Q8N142-2|ADSS1 ENSG00000035687|ENST00000366535|ADSS2;TTYH3-ADSSL1|1|fusion ENSG00000035687|ENST00000366535|ADSS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 426.2908020019531 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 31.258 1 29.141 28.641 29.641 -2.1167 0 0 0 0.21486 1 5668 5668 2.8892 0 1 17184 1168;6960 11270 11274 17244 17244 0.13276457524818852 GPPKKILV 8 Unmodified _GPPKKILV_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2;TTYH3-ADSSL1|1|fusion;ENSG00000185100|ENST00000330877|ADSS1;nc|ENSG00000185100|Q8N142-2|ADSS1 ENSG00000035687|ENST00000366535|ADSS2;TTYH3-ADSSL1|1|fusion ENSG00000035687|ENST00000366535|ADSS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 426.29052734375 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 39.127 1 36.578 36.078 37.078 -2.5491 0 0 0 0.21486 1 7268 7268 0.79363 0 1 17185 1168;6960 11270 11274 17245 17245 0.13276457524818852 GPPKKILV 8 Unmodified _GPPKKILV_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2;TTYH3-ADSSL1|1|fusion;ENSG00000185100|ENST00000330877|ADSS1;nc|ENSG00000185100|Q8N142-2|ADSS1 ENSG00000035687|ENST00000366535|ADSS2;TTYH3-ADSSL1|1|fusion ENSG00000035687|ENST00000366535|ADSS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.2903137207031 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 17.927 1 16.654 16.154 17.154 -1.2722 0 0 0 0.21486 1 2665 2665 0.79363 0 1 17186 1168;6960 11270 11274 17246 17246 0.13276457524818852 GPPKKILV 8 Unmodified _GPPKKILV_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2;TTYH3-ADSSL1|1|fusion;ENSG00000185100|ENST00000330877|ADSS1;nc|ENSG00000185100|Q8N142-2|ADSS1 ENSG00000035687|ENST00000366535|ADSS2;TTYH3-ADSSL1|1|fusion ENSG00000035687|ENST00000366535|ADSS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 426.2906188964844 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 57.104 1 53.927 53.427 54.427 -3.1761 0 0 0 0.21486 1 10637 10637 0.79363 0 1 17187 1168;6960 11270 11274 17247 17247 0.13276457524818852 GPPLCDNHV 9 Unmodified _GPPLCDNHV_ 0 0 0 nc|ENSG00000138315|Q8WWZ8-2|OIT3;ENSG00000138315|ENST00000334011|OIT3 nc|ENSG00000138315|Q8WWZ8-2|OIT3 nc|ENSG00000138315|Q8WWZ8-2|OIT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7235412597656 2 476.221277 950.428001 0.24402 0.00011621 0.60099 0.00028621 0.84501 0.00040241 476.22138563645433 136.88 0.90587 132.04 131.76 132.66 -4.84 120 25 6 0 0 0 0.6329 1 26344 26344 10.824 2.9138 1 14857000 17188 4164 11271 11275 17248 17248 -0.04919605048166886 GPPRMQWRSPP 11 Unmodified _GPPRMQWRSPP_ 0 0 0 ENST00000427004.5_1_6:33378256-33380059:+|nuORF ENST00000427004.5_1_6:33378256-33380059:+|nuORF ENST00000427004.5_1_6:33378256-33380059:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2148742675781 3 436.892513 1307.65571 0.29529 0.00012901 -0.17094 -7.4682E-05 0.12435 5.4326E-05 436.8921905934746 30.306 0.66314 28.414 27.928 28.591 -1.8928 25 18 2 0 0 0 0.79196 1 5160 5160 4.7159 0.30977 1 537580 17189 9734 11272 11276 17249 17249 0.014187728796741794 GPQAAGEEL 9 Unmodified _GPQAAGEEL_ 0 0 0 ENSG00000198883|ENST00000535214|PNMA5 ENSG00000198883|ENST00000535214|PNMA5 ENSG00000198883|ENST00000535214|PNMA5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22760009765625 2 436.211432 870.408311 0.30294 0.00013215 -0.096483 -4.2087E-05 0.20646 9.006E-05 436.21139765912926 30.643 1.0226 28.526 28.011 29.033 -2.1167 62 28 3 0 0 0 0.67531 1 5584 5584 7.9102 0.62092 1 1320500 17190 7513 11273 11277 17250 17250 -0.03207657787288554 GPQDKRTLAT 10 Unmodified _GPQDKRTLAT_ 0 0 0 ENST00000459771.5_1_15:99678217-99679622:-|nuORF;ENSG00000103852|ENST00000394132|TTC23 ENST00000459771.5_1_15:99678217-99679622:-|nuORF ENST00000459771.5_1_15:99678217-99679622:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7783813476562 2 543.798737 1085.58292 NaN NaN NaN NaN NaN NaN NaN 50.12 1 47.113 46.613 47.613 -3.0068 0 0 0 0.22559 1 9204 9204 17.113 4.8722 1 17191 2207 11274 11278 17251 17251 0.043553423578941874 GPQQRKHGQQP 11 Unmodified _GPQQRKHGQQP_ 0 0 0 ENSG00000163354|ENST00000368424|DCST2 ENSG00000163354|ENST00000368424|DCST2 ENSG00000163354|ENST00000368424|DCST2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.765380859375 2 630.831434 1259.64832 NaN NaN NaN NaN NaN NaN NaN 146.19 1 146.19 145.69 146.69 0 0 0 0 0.22862 1 29226 29226 9.3831 1.2276 1 17192 5419 11275 11279 17252 17252 0.0288775660360443 GPQRSGLVESG 11 Unmodified _GPQRSGLVESG_ 0 0 0 REV__TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant REV__TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.780517578125 2 543.780544 1085.54654 0.083072 4.5173E-05 0.36822 0.00020023 0.45129 0.0002454 543.7803637971817 25.159 0.45334 23.625 23.435 23.889 -1.5342 23 12 2 0 0 0 0.66087 1 4176 4176 1.4551 0.49284 1 1046300 + 17193 14053 11276 11280 17253 17253 0.0071846546118194965 GPRAPNVY 8 Unmodified _GPRAPNVY_ 0 0 0 REV__ENST00000482171.5_1_2:130912606-130913705:-|nuORF REV__ENST00000482171.5_1_2:130912606-130913705:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.230712890625 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 37.94 1 35.471 34.971 35.971 -2.4688 0 0 0 0.21452 1 7017 7017 13.508 1.8676 1 + 17194 22186 11277 11281 17254 17254 0.009123624117592044 GPRCSSPLD 9 Unmodified _GPRCSSPLD_ 0 0 0 PPP6R2|p.V773L|1|0.36|ENSG00000100239|chr22:50439992-50439992|G/T|missense_variant PPP6R2|p.V773L|1|0.36|ENSG00000100239|chr22:50439992-50439992|G/T|missense_variant PPP6R2|p.V773L|1|0.36|ENSG00000100239|chr22:50439992-50439992|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1463928222656 3 311.148248 930.422915 NaN NaN NaN NaN NaN NaN NaN 152.75 1 147.99 147.49 148.49 -4.7684 0 0 0 0.23508 1 30353 30353 2.4985 0 1 17195 12823 11278 11282 17255 17255 -0.04507908910807146 GPRDADAPEAP 11 Unmodified _GPRDADAPEAP_ 0 0 0 REV__KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant REV__KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7874145507812 2 548.256902 1094.49925 0.57116 0.00031314 1.2664 0.00069429 1.8375 0.0010074 548.2578974675173 49.409 0.24423 49.409 49.232 49.477 0 8 6 2 0 0 0 0.88709 1 9332 9332 8.7454 6.6857 1 668620 + 17196 23700 11279 11283 17256 17256 -0.04421813809813102 GPRIQAMFG 9 Unmodified _GPRIQAMFG_ 0 0 0 REV__ENSG00000173638|ENST00000311124|SLC19A1 REV__ENSG00000173638|ENST00000311124|SLC19A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 326.172607421875 3 326.172617 975.496021 NaN NaN NaN NaN NaN NaN NaN 32.982 1 30.835 30.335 31.335 -2.1468 0 0 0 0.23508 1 5741 5741 1.1933 0 1 + 17197 18365 11280 11284 17257 17257 0.007292646024893656 GPRKFLHS 8 Unmodified _GPRKFLHS_ 0 0 0 nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;ENSG00000205726|ENST00000381318|ITSN1 nc|ENSG00000205726|Q15811-4|ITSN1 nc|ENSG00000205726|Q15811-4|ITSN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.1470031738281 3 314.515371 940.524284 0.85617 0.00026928 -1.0094 -0.00031747 -0.15322 -4.8191E-05 314.51499631585517 26.138 0.51533 24.356 24.105 24.62 -1.7821 37 14 3 0 0 0 1.0115 1 4583 4583 3.5965 0 1 4252900 + 17198 7655 11281 11285 17258 17258 0.05164330574086762 GPRKVYHF 8 Unmodified _GPRKVYHF_ 0 0 0 ENSG00000244623|ENST00000316368|OR2AE1 ENSG00000244623|ENST00000316368|OR2AE1 ENSG00000244623|ENST00000316368|OR2AE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.1875915527344 3 335.187255 1002.53993 NaN NaN NaN NaN NaN NaN NaN 43.985 1 43.985 43.485 44.485 0 0 0 0 0.21486 1 8243 8243 7.2892 1.9923 1 17199 7884 11282 11286 17259 17259 0.0387661709112308 GPRMLNIM 8 Unmodified _GPRMLNIM_ 0 0 0 REV__ENSG00000144724|ENST00000474889|PTPRG;REV__nc|ENSG00000106278|P23471-2|PTPRZ1 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.1663818359375 3 311.166586 930.477928 NaN NaN NaN NaN NaN NaN NaN 149.16 1 143.96 143.46 144.46 -5.1994 0 0 0 0.21486 1 28889 28889 3.9444 0 1 + 17200 15037;16797 11283 11287 17260 17260 0.00990806356116991 GPRPDQRGP 9 Unmodified _GPRPDQRGP_ 0 0 0 REV__ENSG00000007545|ENST00000397412|CRAMP1 REV__ENSG00000007545|ENST00000397412|CRAMP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2566223144531 2 490.25704 978.499526 NaN NaN NaN NaN NaN NaN NaN 18.455 1 18.455 17.955 18.955 0 0 0 0 0.23508 1 2972 2972 10.824 2.9138 1 + 17201 13892 11284 11288 17261 17261 0.009416507007131258 GPRPGLSGCI 10 Unmodified _GPRPGLSGCI_ 0 0 0 REV__ENST00000532749.1_1_11:118402200-118402577:+|nuORF REV__ENST00000532749.1_1_11:118402200-118402577:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73321533203125 2 478.752744 955.490935 -0.40049 -0.00019173 -2.0369 -0.00097518 -2.4374 -0.0011669 478.751237274445 68.277 0.43457 68.277 67.998 68.432 0 16 11 2 0 0 0 0.85325 1 13221 13221 3.9444 0 1 1220800 + 17202 22789 11285 11289 17262 17262 0.011409607398718435 GPRPIMAGY 9 Unmodified _GPRPIMAGY_ 0 0 0 REV__ENST00000265052.9_1_3:127409909-127410023:-|nuORF REV__ENST00000265052.9_1_3:127409909-127410023:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25048828125 2 481.249837 960.485122 NaN NaN NaN NaN NaN NaN NaN 47.097 1 44.147 43.647 44.647 -2.9499 0 0 0 0.22251 1 8589 8589 16.942 5.302 1 + 17203 20236 11286 11290 17263 17263 0.0032986222820454714 GPRPTVDEVD 10 Unmodified _GPRPTVDEVD_ 0 0 0 REV__nc|ENSG00000138685|P09038|FGF2 REV__nc|ENSG00000138685|P09038|FGF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.1875915527344 3 362.180494 1083.51965 NaN NaN NaN NaN NaN NaN NaN 107.36 1 103.04 102.54 103.54 -4.32 0 0 0 0.22588 1 21143 21143 1.9064 0.1641 1 + 17204 24064 11287 11291 17264 17264 -0.018766431499898317 GPRPYPRR 8 Unmodified _GPRPYPRR_ 0 0 0 ENST00000533683.6_2_19:14201006-14201489:-|nuORF ENST00000533683.6_2_19:14201006-14201489:-|nuORF ENST00000533683.6_2_19:14201006-14201489:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.0342712402344 3 333.52627 997.556982 -0.54625 -0.00018219 0.11575 3.8606E-05 -0.43049 -0.00014358 333.5263525580319 39.414 0.38646 37.009 36.823 37.21 -2.4049 16 10 2 0 0 0 1.0265 1 7001 7001 1.6526 1.5298 1 489260 17205 10999 11288 11292 17265 17265 0.05810537696936535 GPRQCIVPEYV 11 Unmodified _GPRQCIVPEYV_ 0 0 0 REV__nc|ENSG00000170456|Q6ZUT9-3|DENND5B REV__nc|ENSG00000170456|Q6ZUT9-3|DENND5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7774047851562 2 630.823898 1259.63324 NaN NaN NaN NaN NaN NaN NaN 154.3 1 149.53 149.03 150.03 -4.7684 0 0 0 0.22862 1 30668 30668 9.3831 0 1 + 17206 18162 11289 11293 17266 17266 0.013811286913778531 GPRQYDGTFY 10 Unmodified _GPRQYDGTFY_ 0 0 0 ENSG00000165028|ENST00000374762|NIPSNAP3B ENSG00000165028|ENST00000374762|NIPSNAP3B ENSG00000165028|ENST00000374762|NIPSNAP3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2752075195312 2 602.275095 1202.53564 NaN NaN NaN NaN NaN NaN NaN 43.122 1 40.403 39.903 40.903 -2.7191 0 0 0 0.22569 1 8076 8076 15.847 3.6065 1 17207 5588 11290 11294 17267 17267 -0.05752936913108897 GPRRAIQKPQ 10 Unmodified _GPRRAIQKPQ_ 0 0 0 IQCJ-SCHIP1|p.R259Sfs*39|1|0.29|ENSG00000283154|chr3:159866175-159866178|GAGA/-|frameshift_variant;nc|ENSG00000283154|P0DPB3-2|SCHIP1;ENSG00000283154|ENST00000638749|IQCJ-SCHIP1;nc|ENSG00000283154|B3KU38-2|IQCJ-SCHIP1;nc|ENSG00000283154|B3KU38|IQCJ-SCHIP1 IQCJ-SCHIP1|p.R259Sfs*39|1|0.29|ENSG00000283154|chr3:159866175-159866178|GAGA/-|frameshift_variant IQCJ-SCHIP1|p.R259Sfs*39|1|0.29|ENSG00000283154|chr3:159866175-159866178|GAGA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.329345703125 2 575.843813 1149.67307 0.3987 0.00022959 -1.1065 -0.00063718 -0.70781 -0.00040759 575.8430280591883 154.83 2.5682 149.58 147.54 150.11 -5.2527 156 72 3 0 0 0 0.75777 1 29793 29793 3.2813 0.28607 1 6641300 17208 8053 11291 11295 17268 17268 0.10422436476960684 GPRYVVQI 8 Unmodified _GPRYVVQI_ 0 0 0 DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.18365478515625 3 311.18351 930.528701 NaN NaN NaN NaN NaN NaN NaN 149.08 1 143.88 143.38 144.38 -5.1994 0 0 0 0.21486 1 28875 28875 3.9444 0 1 17209 900 11292 11296 17269 17269 0.06065794997005014 GPSALRPA 8 Unmodified _GPSALRPA_ 0 0 0 ENST00000443233.5_1_7:107204485-107205092:+|nuORF;ENST00000422290.5_1_7:107204485-107205058:+|nuORF;ENST00000436411.5_1_7:107204485-107204728:+|nuORF ENST00000443233.5_1_7:107204485-107205092:+|nuORF ENST00000443233.5_1_7:107204485-107205092:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 384.8240661621094 2 384.72177 767.428987 0.28744 0.00011058 -0.020808 -8.0052E-06 0.26663 0.00010258 384.72176074927484 31.432 0.32191 29.405 29.267 29.589 -2.0264 13 8 2 0 0 0 0.86877 1 5412 5412 3.5871 0 1 706420 17210 9911 11293 11297 17270 17270 0.03596977383040212 GPSAQGWIL 9 Unmodified _GPSAQGWIL_ 0 0 0 ENST00000564079.5_1_15:43668383-43669260:+|nuORF ENST00000564079.5_1_15:43668383-43669260:+|nuORF ENST00000564079.5_1_15:43668383-43669260:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25018310546875 2 464.747985 927.481417 -0.21179 -9.843E-05 -2.4009 -0.0011158 -2.6127 -0.0012143 464.7458357699406 42.29 0.90665 39.571 38.933 39.84 -2.7191 54 25 3 0 0 0 0.25976 1 7866 7866 17.113 2.2746 1 5552700 17211 11339 11294 11298 17271 17271 0.014775157260146443 GPSAQGWIL 9 Unmodified _GPSAQGWIL_ 0 0 0 ENST00000564079.5_1_15:43668383-43669260:+|nuORF ENST00000564079.5_1_15:43668383-43669260:+|nuORF ENST00000564079.5_1_15:43668383-43669260:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.250732421875 2 464.747985 927.481417 -0.09948 -4.6233E-05 -2.1425 -0.00099573 -2.242 -0.001042 464.745858840736 42.293 1.0201 39.642 38.9 39.92 -2.651 60 28 3 0 0 0 0.35556 2 7552 7540;7552 12.241 2.0901 1 3630700 17212 11339 11294 11298 17272;17273 17273 0.014775157260146443 GPSCHPAA 8 Unmodified _GPSCHPAA_ 0 0 0 ENST00000484995.5_2_3:112280573-112282267:+|nuORF ENST00000484995.5_2_3:112280573-112282267:+|nuORF ENST00000484995.5_2_3:112280573-112282267:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 369.8638000488281 2 370.163231 738.311908 NaN NaN NaN NaN NaN NaN NaN 66.517 1 63.444 62.944 63.944 -3.0725 0 0 0 0.2396 1 12891 12891 0.12286 0 1 17213 10438 11295 11299 17274 17274 -0.06771503828235836 GPSLPMSAAV 10 Unmodified _GPSLPMSAAV_ 0 0 0 REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2416076660156 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 70.115 1 66.535 66.035 67.035 -3.5798 0 0 0 2.8426 1 13213 13213 1.9275 0 1 + 17214 19919 11296 11300 17275 17275 0.0017073627144554848 GPSLTVDLRV 10 Unmodified _GPSLTVDLRV_ 0 0 0 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.5289306640625 3 352.873113 1055.59751 -0.72735 -0.00025666 0.64093 0.00022617 -0.086424 -3.0497E-05 352.87328221695964 54.07 0.73243 50.933 50.435 51.167 -3.1377 46 20 3 0 0 0 0.39974 1 9961 9961 0.84494 0 1 9480400 + 17215 18324 11297 11301 17276 17276 0.07193414506036788 GPSLTVDLRV 10 Unmodified _GPSLTVDLRV_ 0 0 0 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 352.873113 1055.59751 -0.13462 -4.7504E-05 0.14112 4.9798E-05 0.0065007 2.2939E-06 352.87311616152704 50.946 0.69375 50.946 50.471 51.165 0 0.056565 -0.00013246 NaN 0.84494 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4385600 + 17216 18324 11297 11301 0.07193414506036788 GPSLTVDLRV 10 Unmodified _GPSLTVDLRV_ 0 0 0 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 352.873113 1055.59751 -0.49799 -0.00017573 0.37272 0.00013152 -0.12527 -4.4206E-05 352.8731872583277 53.618 0.79861 50.734 50.317 51.116 -2.8837 -0.1549 0.00011272 NaN 0.84494 49 22 3 NaN NaN NaN NaN 0 NaN NaN 0 8099900 + 17217 18324 11297 11301 0.07193414506036788 GPSLTVDLRV 10 Unmodified _GPSLTVDLRV_ 0 0 0 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 352.873113 1055.59751 0.059227 2.09E-05 -0.10145 -3.5798E-05 -0.042219 -1.4898E-05 352.8730366071777 54.079 0.6888 50.944 50.526 51.215 -3.1352 0.054813 -0.00038924 NaN 0.84494 43 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7134700 + 17218 18324 11297 11301 0.07193414506036788 GPSPHWLL 8 Unmodified _GPSPHWLL_ 0 0 0 CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;ENST00000527827.1_1_8:145621508-145621857:-|nuORF CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.748046875 2 453.745245 905.475937 NaN NaN NaN NaN NaN NaN NaN 89.138 1 85.094 84.594 85.594 -4.0443 0 0 0 0.21323 1 16984 16984 14.582 4.3983 1 17219 717 11298 11302 17277 17277 0.019418369341906327 GPSRDYSHYY 10 Unmodified _GPSRDYSHYY_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7591552734375 2 622.770177 1243.5258 NaN NaN NaN NaN NaN NaN NaN 131.08 1 131.08 130.58 131.58 0 0 0 0 2.8426 1 25915 25915 0.26539 0 1 + 17220 661 11299 11303 17278 17278 -0.08622124918474583 GPSRLSPPP 9 Unmodified _GPSRLSPPP_ 0 0 0 ENST00000361875.7_1_3:150126326-150126443:+|nuORF ENST00000361875.7_1_3:150126326-150126443:+|nuORF ENST00000361875.7_1_3:150126326-150126443:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7513122558594 2 454.253434 906.492316 0.25237 0.00011464 -0.015002 -6.8149E-06 0.23736 0.00010782 454.25337399626414 34 1.8646 34 33.025 34.889 0 70 53 2 0 0 0 0.54076 1 6124 6124 20.454 0 1 572410 17221 9037 11300 11304 17279 17279 0.03532918100279403 GPSRLSPPP 9 Unmodified _GPSRLSPPP_ 0 0 0 ENST00000361875.7_1_3:150126326-150126443:+|nuORF ENST00000361875.7_1_3:150126326-150126443:+|nuORF ENST00000361875.7_1_3:150126326-150126443:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7514953613281 2 454.253434 906.492316 0.072536 3.295E-05 0.046395 2.1075E-05 0.11893 5.4025E-05 454.2534438893065 36.553 1.5532 34.205 33.442 34.996 -2.3479 57 44 2 0 0 0 0.69192 1 6438 6438 20.454 0 1 584640 17222 9037 11300 11304 17280 17280 0.03532918100279403 GPTPPAPA 8 Unmodified _GPTPPAPA_ 0 0 0 REV__ENST00000346085.9_2_6:157222547-157256625:+|nuORF REV__ENST00000346085.9_2_6:157222547-157256625:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 354.1810607910156 2 354.189771 706.36499 NaN NaN NaN NaN NaN NaN NaN 100.5 1 96.199 95.699 96.699 -4.297 0 0 0 0.23664 1 19224 19224 3.2813 0 1 + 17223 20752 11301 11305 17281 17281 6.197226082349516E-05 GPTVHSITAP 10 Unmodified _GPTVHSITAP_ 0 0 0 REV__ENST00000528667.5_1_1:110162788-110163591:+|nuORF REV__ENST00000528667.5_1_1:110162788-110163591:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2640686035156 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 55.718 1 55.718 55.218 56.218 0 0 0 0 2.8426 1 10641 10641 6.6304 0.42459 1 + 17224 20134 11302 11306 17282 17282 0.023328834091216777 GPVLSKRPGR 10 Unmodified _GPVLSKRPGR_ 0 0 0 REV__ENSG00000136383|ENST00000258888|ALPK3 REV__ENSG00000136383|ENST00000258888|ALPK3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.376220703125 2 533.827632 1065.64071 NaN NaN NaN NaN NaN NaN NaN 165.19 1 165.19 164.69 165.69 0 0 0 0 0.22588 1 33495 33495 10.824 2.0785 1 + 17225 16328 11303 11307 17283 17283 0.11051649073988301 GPVPLTKEQLY 11 Unmodified _GPVPLTKEQLY_ 0 0 0 ENSG00000088038|ENST00000221232|CNOT3 ENSG00000088038|ENST00000221232|CNOT3 ENSG00000088038|ENST00000221232|CNOT3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7603149414062 2 622.847896 1243.68124 NaN NaN NaN NaN NaN NaN NaN 136.23 1 131.59 131.09 132.09 -4.6399 0 0 0 0.22775 1 26880 26880 10.074 0.52995 1 17226 1724 11304 11308 17284 17284 0.06914525883098577 GPVSPNLMF 9 Unmodified _GPVSPNLMF_ 0 0 0 REV__ENSG00000164080|ENST00000684192|RAD54L2 REV__ENSG00000164080|ENST00000684192|RAD54L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.488037109375 3 321.165239 960.473888 NaN NaN NaN NaN NaN NaN NaN 130.12 1 125.48 124.98 125.98 -4.6359 0 0 0 0.19643 1 25645 25645 0.40827 0.37898 1 + 17227 17646 11305 11309 17285 17285 -0.007929598659416115 GPVVIPHYNR 10 Unmodified _GPVVIPHYNR_ 0 0 0 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3170776367188 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 175.11 1 170.32 169.82 170.82 -4.7898 0 0 0 2.8426 1 35799 35799 0.84494 0.7339 1 + 17228 14362 11306 11310 17286 17286 0.05543942837061877 GPWLLGKC 8 Unmodified _GPWLLGKC_ 0 0 0 REV__EPPK1|p.R636W|2|0.35|ENSG00000261150|chr8:143871348-143871348|G/A|missense_variant REV__EPPK1|p.R636W|2|0.35|ENSG00000261150|chr8:143871348-143871348|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2281799316406 2 437.236199 872.457844 NaN NaN NaN NaN NaN NaN NaN 18.361 1 18.361 17.861 18.861 0 0 0 0 0.2396 1 2951 2951 0 0 1 + 17229 23497 11307 11311 17287 17287 0.016513786878249448 GPWWGLSA 8 Unmodified _GPWWGLSA_ 0 0 0 ENST00000320330.7_1_16:29827558-29827837:+|nuORF ENST00000320330.7_1_16:29827558-29827837:+|nuORF ENST00000320330.7_1_16:29827558-29827837:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.228271484375 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 20.624 1 19.239 18.739 19.739 -1.3847 0 0 0 0.21486 1 3207 3207 10.183 4.423 1 17230 8709 11308 11312 17288 17288 -0.023224249912459527 GPWYALAP 8 Unmodified _GPWYALAP_ 0 0 0 REV__ENSG00000141337|ENST00000621439|ARSG REV__ENSG00000141337|ENST00000621439|ARSG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2166748046875 2 437.726521 873.438489 -0.27373 -0.00011982 -0.46398 -0.0002031 -0.73771 -0.00032292 437.72625393139805 50.62 0.53539 47.739 47.429 47.964 -2.8811 27 14 3 0 0 0 1.0035 1 9652 9652 6.3541 0 1 2082400 + 17231 16620 11309 11313 17289 17289 -0.0032925433143873306 GPYDYTYG 8 Unmodified _GPYDYTYG_ 0 0 0 COL11A2|p.I664Rfs*5|1|0.25|ENSG00000204248|chr6:33176034-33176035|TA/-|frameshift_variant;COL11A2|p.P811Lfs*87|1|0.54|ENSG00000204248|chr6:33173394-33173394|G/-|frameshift_variant;COL11A2|p.G956Wfs*11|1|0.1|ENSG00000204248|chr6:33171740-33171741|-/G|frameshift_variant;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2 COL11A2|p.I664Rfs*5|1|0.25|ENSG00000204248|chr6:33176034-33176035|TA/-|frameshift_variant COL11A2|p.I664Rfs*5|1|0.25|ENSG00000204248|chr6:33176034-33176035|TA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 312.1465148925781 3 312.464231 934.370863 0.084681 2.646E-05 -0.097916 -3.0595E-05 -0.013235 -4.1353E-06 312.4641317343014 58.956 0.56957 55.705 55.523 56.093 -3.2517 17 15 2 0 0 0 0.85653 1 10932 10932 1.8442 0 1 591890 17232 610 11310 11314 17290 17290 -0.09894749052909901 GPYDYTYG 8 Unmodified _GPYDYTYG_ 0 0 0 COL11A2|p.I664Rfs*5|1|0.25|ENSG00000204248|chr6:33176034-33176035|TA/-|frameshift_variant;COL11A2|p.P811Lfs*87|1|0.54|ENSG00000204248|chr6:33173394-33173394|G/-|frameshift_variant;COL11A2|p.G956Wfs*11|1|0.1|ENSG00000204248|chr6:33171740-33171741|-/G|frameshift_variant;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2 COL11A2|p.I664Rfs*5|1|0.25|ENSG00000204248|chr6:33176034-33176035|TA/-|frameshift_variant COL11A2|p.I664Rfs*5|1|0.25|ENSG00000204248|chr6:33176034-33176035|TA/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 312.464231 934.370863 -0.34664 -0.00010831 0.4781 0.00014939 0.13147 4.1079E-05 312.46429764184694 58.625 0.422 55.714 55.579 56.001 -2.9105 0.0048644 0.00035829 NaN 1.8442 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 410770 17233 610 11310 11314 -0.09894749052909901 GQAALGNVEA 10 Unmodified _GQAALGNVEA_ 0 0 0 REV__ENSG00000109107|ENST00000226253|ALDOC REV__ENSG00000109107|ENST00000226253|ALDOC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2386169433594 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 21.096 1 19.711 19.211 20.211 -1.3847 0 0 0 0.22527 1 3304 3304 21.537 2.28 1 + 17234 15152 11311 11315 17291 17291 -0.005682800046201919 GQAALGNVEA 10 Unmodified _GQAALGNVEA_ 0 0 0 REV__ENSG00000109107|ENST00000226253|ALDOC REV__ENSG00000109107|ENST00000226253|ALDOC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2557067871094 2 465.237981 928.461409 -0.72848 -0.00033892 -2.4355 -0.0011331 -3.1639 -0.001472 465.23826547278077 21.345 0.24351 19.624 19.497 19.74 -1.7211 11 6 2 0 0 0 0.65108 1 3344 3344 16.149 0.90062 1 269840 + 17235 15152 11311 11315 17292 17292 -0.005682800046201919 GQDGSVVQF 9 Unmodified _GQDGSVVQF_ 0 0 0 ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3;ENST00000511179.1_1_17:48313271-48313352:+|nuORF;nc|ENSG00000188612|P61956-2|SUMO2;ENSG00000177688|ENST00000326669|SUMO4;ENST00000466861.1_1_21:46233737-46238015:-|nuORF ENSG00000188612|ENST00000420826|SUMO2 ENSG00000188612|ENST00000420826|SUMO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 468.25592041015625 2 468.724707 935.43486 0.077431 3.6294E-05 -0.73177 -0.000343 -0.65434 -0.0003067 468.7243277440281 93.02 0.92519 89.176 88.749 89.674 -3.844 51 26 3 0 0 0 0.58699 1 17800 17800 25.399 18.11 1 9146100 17236 6941 11312 11316 17293 17293 -0.03543968895939997 GQDGSVVQF 9 Unmodified _GQDGSVVQF_ 0 0 0 ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3;ENST00000511179.1_1_17:48313271-48313352:+|nuORF;nc|ENSG00000188612|P61956-2|SUMO2;ENSG00000177688|ENST00000326669|SUMO4;ENST00000466861.1_1_21:46233737-46238015:-|nuORF ENSG00000188612|ENST00000420826|SUMO2 ENSG00000188612|ENST00000420826|SUMO2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 468.724707 935.43486 -0.092338 -4.3281E-05 -0.19713 -9.2402E-05 -0.28947 -0.00013568 468.72457776137685 89.142 0.88049 89.142 88.718 89.599 0 -0.012113 0.00034899 NaN 25.399 60 24 3 NaN NaN NaN NaN 0 NaN NaN 0 9035900 17237 6941 11312 11316 -0.03543968895939997 GQDGSVVQF 9 Unmodified _GQDGSVVQF_ 0 0 0 ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3;ENST00000511179.1_1_17:48313271-48313352:+|nuORF;nc|ENSG00000188612|P61956-2|SUMO2;ENSG00000177688|ENST00000326669|SUMO4;ENST00000466861.1_1_21:46233737-46238015:-|nuORF ENSG00000188612|ENST00000420826|SUMO2 ENSG00000188612|ENST00000420826|SUMO2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 468.724707 935.43486 -0.05652 -2.6492E-05 -0.39175 -0.00018362 -0.44827 -0.00021011 468.7244661787289 93.086 1.0002 89.096 88.622 89.623 -3.9907 -0.058124 0.00016655 NaN 25.399 62 28 3 NaN NaN NaN NaN 0 NaN NaN 0 13240000 17238 6941 11312 11316 -0.03543968895939997 GQDGSVVQF 9 Unmodified _GQDGSVVQF_ 0 0 0 ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3;ENST00000511179.1_1_17:48313271-48313352:+|nuORF;nc|ENSG00000188612|P61956-2|SUMO2;ENSG00000177688|ENST00000326669|SUMO4;ENST00000466861.1_1_21:46233737-46238015:-|nuORF ENSG00000188612|ENST00000420826|SUMO2 ENSG00000188612|ENST00000420826|SUMO2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 468.724707 935.43486 0.19283 9.0386E-05 -0.89334 -0.00041873 -0.7005 -0.00032834 468.7243138267356 93.346 0.85208 89.202 88.765 89.617 -4.1435 0.048374 -0.00030366 NaN 25.399 39 24 2 NaN NaN NaN NaN 0 NaN NaN 0 7537100 17239 6941 11312 11316 -0.03543968895939997 GQDKLHFA 8 Unmodified _GQDKLHFA_ 0 0 0 REV__ENST00000379205.4_1_4:159590375-159590444:-|nuORF REV__ENST00000379205.4_1_4:159590375-159590444:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2387390136719 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 51.898 1 49.016 48.516 49.516 -2.8824 0 0 0 0.20294 1 9865 9865 23.148 5.0134 1 + 17240 21133 11313 11317 17294 17294 0.00036345066178000707 GQEAILEAQQ 10 Unmodified _GQEAILEAQQ_ 0 0 0 ENST00000380995.5_1_22:47158670-47188452:+|nuORF;ENST00000441936.5_1_22:47158670-47185250:+|nuORF;ENST00000355704.7_1_22:47158670-47189469:+|nuORF;ENST00000496139.5_1_22:47158670-47188605:+|nuORF ENST00000380995.5_1_22:47158670-47188452:+|nuORF ENST00000380995.5_1_22:47158670-47188452:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7789306640625 2 543.774928 1085.5353 0.5808 0.00031582 0.38887 0.00021146 0.96967 0.00052728 544.2751144150842 102.11 1.2848 98.088 97.598 98.882 -4.0212 73 36 3 0 0 0 0.18999 1 19678 19678 3.104 0 1 4736900 17241 8960 11314 11318 17295 17295 -0.004043566329301029 GQEALKQGM 9 Unmodified _GQEALKQGM_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2427062988281 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 113.18 1 113.18 112.68 113.68 0 0 0 0 0.19657 1 22254 22254 4.897 1.0207 1 17242 7388 11315 11319 17296 17296 -0.011950493596259548 GQEFMIEIK 9 Unmodified _GQEFMIEIK_ 0 0 0 MSH3|p.N861Mfs*6|1|0.43|ENSG00000113318|chr5:80792766-80792766|A/-|frameshift_variant;MSH3|p.N1020Kfs*17|1|0.43|ENSG00000113318|chr5:80864864-80864865|-/A|frameshift_variant;MSH3|p.N1020Ifs*40|1|0.46|ENSG00000113318|chr5:80864865-80864865|A/-|frameshift_variant;ENSG00000113318|ENST00000265081|MSH3 MSH3|p.N861Mfs*6|1|0.43|ENSG00000113318|chr5:80792766-80792766|A/-|frameshift_variant MSH3|p.N861Mfs*6|1|0.43|ENSG00000113318|chr5:80792766-80792766|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7879638671875 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 151.24 1 151.24 150.74 151.74 0 0 0 0 0.19162 1 30286 30286 2.6312 2.3658 1 17243 2736 11316 11320 17297 17297 0.004749635057123669 GQEFMIEIK 9 Unmodified _GQEFMIEIK_ 0 0 0 MSH3|p.N861Mfs*6|1|0.43|ENSG00000113318|chr5:80792766-80792766|A/-|frameshift_variant;MSH3|p.N1020Kfs*17|1|0.43|ENSG00000113318|chr5:80864864-80864865|-/A|frameshift_variant;MSH3|p.N1020Ifs*40|1|0.46|ENSG00000113318|chr5:80864865-80864865|A/-|frameshift_variant;ENSG00000113318|ENST00000265081|MSH3 MSH3|p.N861Mfs*6|1|0.43|ENSG00000113318|chr5:80792766-80792766|A/-|frameshift_variant MSH3|p.N861Mfs*6|1|0.43|ENSG00000113318|chr5:80792766-80792766|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7830200195312 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 155.98 1 151.2 150.7 151.7 -4.7791 0 0 0 0.21469 1 31007 31007 19.257 3.4098 1 17244 2736 11316 11320 17298 17298 0.004749635057123669 GQEPAEFWD 9 Unmodified _GQEPAEFWD_ 0 0 0 nc|ENSG00000135407|O75366-2|AVIL;ENST00000549851.5_1_12:58191667-58209405:-|nuORF;ENSG00000135407|ENST00000549994|AVIL nc|ENSG00000135407|O75366-2|AVIL nc|ENSG00000135407|O75366-2|AVIL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2005615234375 3 360.154056 1077.44034 -0.29792 -0.0001073 -2.0651 -0.00074377 -2.3631 -0.00085107 360.1531360651992 18.178 0.21161 18.178 18.09 18.302 0 8 5 2 0 0 0 0.8606 1 2937 2937 10.8 4.6077 1 453000 17245 3925 11317 11321 17299 17299 -0.09528290104140069 GQEQQFVDSN 10 Unmodified _GQEQQFVDSN_ 0 0 0 REV__ENST00000566288.1_1_15:42040980-42042834:+|nuORF REV__ENST00000566288.1_1_15:42040980-42042834:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32958984375 2 576.251817 1150.48908 0.26534 0.0001529 0.23379 0.00013472 0.49913 0.00028763 576.2519776324527 26.623 0.45829 24.988 24.789 25.247 -1.6347 28 12 3 0 0 0 0.51405 1 4455 4455 3.8763 0.59502 1 1230600 + 17246 18398 11318 11322 17300 17300 -0.08014421535040128 GQEQSSRQ 8 Unmodified _GQEQSSRQ_ 0 0 0 REV__nc|ENSG00000130787|O75146-2|HIP1R REV__nc|ENSG00000130787|O75146-2|HIP1R MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2394104003906 2 460.215037 918.415522 NaN NaN NaN NaN NaN NaN NaN 65.278 1 61.995 61.495 62.495 -3.2832 0 0 0 0.2074 1 12269 12269 19.439 0 1 + 17247 16032 11319 11323 17301 17301 -0.046949251868568354 GQERNGVPS 9 Unmodified _GQERNGVPS_ 0 0 0 ENST00000561332.1_2_15:74501815-74504999:+|nuORF ENST00000561332.1_2_15:74501815-74504999:+|nuORF ENST00000561332.1_2_15:74501815-74504999:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.14337158203125 3 315.157912 942.451907 NaN NaN NaN NaN NaN NaN NaN 91.474 1 91.474 90.974 91.974 0 0 0 0 0.23508 1 17876 17876 0.96228 0.33545 1 17248 11302 11320 11324 17302 17302 -0.02162048290142593 GQGACAGR 8 Unmodified _GQGACAGR_ 0 0 0 REV__ENST00000264607.8_1_2:239335652-239342206:+|nuORF REV__ENST00000264607.8_1_2:239335652-239342206:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2048034667969 2 360.166305 718.318056 NaN NaN NaN NaN NaN NaN NaN 50.488 1 47.443 46.943 47.943 -3.0453 0 0 0 0.2343 1 9254 9254 0.62683 0.50396 1 + 17249 20232 11321 11325 17303 17303 -0.05236985596695831 GQGPRRSR 8 Unmodified _GQGPRRSR_ 0 0 0 REV__AGRN|p.P627Rfs*105|2|0.32|ENSG00000188157|chr1:1043899-1043899|C/-|frameshift_variant REV__AGRN|p.P627Rfs*105|2|0.32|ENSG00000188157|chr1:1043899-1043899|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.1575927734375 3 305.174008 912.500195 NaN NaN NaN NaN NaN NaN NaN 67.085 1 67.085 66.585 67.585 0 0 0 0 0.21486 1 12963 12963 1.4819 0.51963 1 + 17250 12984 11322 11326 17304 17304 0.04044490140427115 GQGVCAAK 8 Unmodified _GQGVCAAK_ 0 0 0 REV__nc|ENSG00000014123|O94874-3|UFL1 REV__nc|ENSG00000014123|O94874-3|UFL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.4578857421875 2 367.186706 732.358859 NaN NaN NaN NaN NaN NaN NaN 54.765 1 51.881 51.381 52.381 -2.8837 0 0 0 0.23749 1 10462 10462 0.62683 0 1 + 17251 13952 11323 11327 17305 17305 -0.01802644277086074 GQHLNFILPP 10 Unmodified _GQHLNFILPP_ 0 0 0 YLPM1|p.P816Qfs*13|1|0.4|ENSG00000119596|chr14:74797738-74797738|G/-|frameshift_variant YLPM1|p.P816Qfs*13|1|0.4|ENSG00000119596|chr14:74797738-74797738|G/-|frameshift_variant YLPM1|p.P816Qfs*13|1|0.4|ENSG00000119596|chr14:74797738-74797738|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.85272216796875 3 379.213469 1134.61858 -0.17591 -6.6708E-05 -2.0004 -0.00075856 -2.1763 -0.00082527 379.212035368547 19.622 0.54933 19.622 19.242 19.791 0 20 15 2 0 0 0 1.1231 1 3146 3146 0.063865 0 1 535910 17252 26588 11324 11328 17306 17306 0.056654246055586555 GQHTWLLL 8 Unmodified _GQHTWLLL_ 0 0 0 PEAR1|p.G1005Afs*57|3|0.33|ENSG00000187800|chr1:156914691-156914691|C/-|frameshift_variant;PEAR1|p.P997Lfs*65|1|0.35|ENSG00000187800|chr1:156914670-156914670|C/-|frameshift_variant PEAR1|p.G1005Afs*57|3|0.33|ENSG00000187800|chr1:156914691-156914691|C/-|frameshift_variant PEAR1|p.G1005Afs*57|3|0.33|ENSG00000187800|chr1:156914691-156914691|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1849060058594 3 323.18351 966.528701 NaN NaN NaN NaN NaN NaN NaN 157.1 1 151.81 151.31 152.31 -5.2854 0 0 0 0.21486 1 30483 30483 0.40072 0 1 17253 12773 11325 11329 17307 17307 0.044097949970023365 GQKEKTFVE 9 Unmodified _GQKEKTFVE_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|292|2|anti-sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|292|2|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2709350585938 2 533.282389 1064.55022 0.3246 0.0001731 1.1267 0.00060085 1.4513 0.00077396 533.2828251442953 107.6 0.71457 103.19 102.76 103.47 -4.4121 34 20 2 0 0 0 0.25976 1 20611 20611 17.113 4.8722 1 2395700 + 17254 23622 11326 11330 17308 17308 0.020531352350417365 GQLHHKPY 8 Unmodified _GQLHHKPY_ 0 0 0 REV__ENST00000456900.1_1_1:166039982-166135561:-|nuORF REV__ENST00000456900.1_1_1:166039982-166135561:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25860595703125 2 490.259051 978.503549 0.22479 0.00011021 -1.0926 -0.00053564 -0.86777 -0.00042543 490.2583196998363 36.158 0.42814 36.158 35.925 36.353 0 15 11 2 0 0 0 8448 1 6684 6684 10.074 1.9184 1 2811200 + 17255 21856 11327 11331 17309 17309 0.013437401944202065 GQLLEWWIYFS 11 Unmodified _GQLLEWWIYFS_ 0 0 0 REV__ENST00000228284.7_1_12:108955096-108955138:-|nuORF REV__ENST00000228284.7_1_12:108955096-108955138:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2410888671875 3 481.243206 1440.70779 NaN NaN NaN NaN NaN NaN NaN 81.893 1 78.206 77.706 78.706 -3.6879 0 0 0 0.22632 1 15607 15607 0.0059557 0 1 + 17256 20055 11328 11332 17310 17310 0.005062147744183676 GQLQSLTTVP 10 Unmodified _GQLQSLTTVP_ 0 0 0 REV__nc|ENSG00000122678|Q9NP87-2|POLM REV__nc|ENSG00000122678|Q9NP87-2|POLM MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279541015625 2 522.290214 1042.56587 0.20039 0.00010466 4.4284 0.0023129 4.6288 0.0024176 522.7952471701902 138.38 0.26947 138.38 138.15 138.42 0 10 7 2 0 0 0 0.65108 1 27480 27480 16.149 1.3108 1 4008400 + 17257 15698 11329 11333 17311 17311 0.04629421752065355 GQLQSLTTVP 10 Unmodified _GQLQSLTTVP_ 0 0 0 REV__nc|ENSG00000122678|Q9NP87-2|POLM REV__nc|ENSG00000122678|Q9NP87-2|POLM MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 522.290214 1042.56587 0.20039 0.00010466 4.4284 0.0023129 4.6288 0.0024176 522.7952471701902 138.38 0.26947 138.38 138.15 138.42 0 0 0 NaN 16.149 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 4008400 + 17258 15698 11329 11333 0.04629421752065355 GQLRLSKRPP 10 Unmodified _GQLRLSKRPP_ 0 0 0 REV__ENSG00000136014|ENST00000258499|USP44 REV__ENSG00000136014|ENST00000258499|USP44 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.328125 2 576.354014 1150.69348 NaN NaN NaN NaN NaN NaN NaN 129.54 1 124.8 124.3 125.3 -4.7408 0 0 0 2.8426 1 24928 24928 0.043787 0 1 + 17259 16308 11330 11334 17312 17312 0.12415607136813378 GQLSDLVVV 9 Unmodified _GQLSDLVVV_ 0 0 0 ENST00000511288.1_1_17:48545715-48548505:+|nuORF;ENST00000506085.5_1_17:48545715-48551043:+|nuORF ENST00000511288.1_1_17:48545715-48548505:+|nuORF ENST00000511288.1_1_17:48545715-48548505:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2589111328125 2 465.26875 928.522947 0.11678 5.4334E-05 -0.18332 -8.5293E-05 -0.06654 -3.0959E-05 465.26860954414514 116.36 0.93926 116.36 115.91 116.85 0 68 26 4 0 0 0 0.067773 2 22947 22865;22947 65.235 0 1 19073000 17260 10678 11331 11335 17313;17314 17314 0.05582651694658125 GQLSDLVVV 9 Unmodified _GQLSDLVVV_ 0 0 0 ENST00000511288.1_1_17:48545715-48548505:+|nuORF;ENST00000506085.5_1_17:48545715-48551043:+|nuORF ENST00000511288.1_1_17:48545715-48548505:+|nuORF ENST00000511288.1_1_17:48545715-48548505:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24566650390625 2 465.26875 928.522947 0.19592 9.1155E-05 -0.29439 -0.00013697 -0.098465 -4.5813E-05 465.2685561032495 120.78 0.99081 116.26 115.82 116.81 -4.5221 81 27 4 0 0 0 0.033473 2 23787 23787;23858 78.728 0 1 27842000 17261 10678 11331 11335 17315;17316 17315 0.05582651694658125 GQLSDLVVV 9 Unmodified _GQLSDLVVV_ 0 0 0 ENST00000511288.1_1_17:48545715-48548505:+|nuORF;ENST00000506085.5_1_17:48545715-48551043:+|nuORF ENST00000511288.1_1_17:48545715-48548505:+|nuORF ENST00000511288.1_1_17:48545715-48548505:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25030517578125 2 465.26875 928.522947 0.56912 0.00026479 -0.60678 -0.00028232 -0.037664 -1.7524E-05 465.26840448232326 120.98 0.908 116.29 115.86 116.77 -4.6873 78 25 4 0 0 0 0.12542 1 23297 23297 65.235 0 1 24695000 17262 10678 11331 11335 17317 17317 0.05582651694658125 GQLSDLVVV 9 Unmodified _GQLSDLVVV_ 0 0 0 ENST00000511288.1_1_17:48545715-48548505:+|nuORF;ENST00000506085.5_1_17:48545715-48551043:+|nuORF ENST00000511288.1_1_17:48545715-48548505:+|nuORF ENST00000511288.1_1_17:48545715-48548505:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2459411621094 2 465.26875 928.522947 0.35416 0.00016478 -0.38768 -0.00018037 -0.03352 -1.5596E-05 465.2685272482645 120.84 1.1096 116.38 115.92 117.03 -4.467 81 30 4 0 0 0 0.19359 1 23216 23216 56.177 0 1 23311000 17263 10678 11331 11335 17318 17318 0.05582651694658125 GQLYYKFF 8 Unmodified _GQLYYKFF_ 0 0 0 REV__ENSG00000055955|ENST00000266041|ITIH4 REV__ENSG00000055955|ENST00000266041|ITIH4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2752075195312 2 533.273835 1064.53312 NaN NaN NaN NaN NaN NaN NaN 100.1 1 95.938 95.438 96.438 -4.1594 0 0 0 0.23312 1 19667 19667 6.2058 0 1 + 17264 14119 11332 11336 17319 17319 0.0034325941990118736 GQNIAPIDK 9 Unmodified _GQNIAPIDK_ 0 0 0 REV__ENST00000470582.1_1_2:96799698-96803509:-|nuORF REV__ENST00000470582.1_1_2:96799698-96803509:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72149658203125 2 478.263999 954.513445 0.034341 1.6424E-05 0.011459 5.4802E-06 0.045799 2.1904E-05 478.26379926661724 64.561 0.66077 61.564 61.153 61.814 -2.9975 23 18 2 0 0 0 0.22334 1 12484 12484 36.044 1.9418 1 897760 + 17265 19176 11333 11337 17320 17320 0.03436883409119673 GQNIAPIDK 9 Unmodified _GQNIAPIDK_ 0 0 0 REV__ENST00000470582.1_1_2:96799698-96803509:-|nuORF REV__ENST00000470582.1_1_2:96799698-96803509:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.263999 954.513445 0.034341 1.6424E-05 0.011459 5.4802E-06 0.045799 2.1904E-05 478.26379926661724 64.561 0.66077 61.564 61.153 61.814 -2.9975 0.032663 0.00018234 NaN 36.044 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 897760 + 17266 19176 11333 11337 0.03436883409119673 GQNLQEQV 8 Unmodified _GQNLQEQV_ 0 0 0 SP140|p.K672Rfs*4|1|0.35|ENSG00000079263|chr2:230294310-230294310|A/-|frameshift_variant;SP140|p.R673Efs*9|1|0.3|ENSG00000079263|chr2:230294309-230294310|-/A|frameshift_variant;nc|ENSG00000079263|Q13342-3|SP140;SP140|p.F779Lfs*17|1|0.23|ENSG00000079263|chr2:230311202-230311202|T/-|frameshift_variant;nc|ENSG00000079263|Q13342-6|SP140;nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140;ENST00000473711.1_1_2:231090559-231102095:+|nuORF;ENST00000543928.5_1_2:231090559-231103146:+|nuORF;nc|ENSG00000079263|Q13342-4|SP140;SP140|p.K364Ifs*47|1|0.04|ENSG00000079263|chr2:230253348-230253349|-/TTCTC|frameshift_variant;nc|ENSG00000079263|Q13342-2|SP140 SP140|p.K672Rfs*4|1|0.35|ENSG00000079263|chr2:230294310-230294310|A/-|frameshift_variant SP140|p.K672Rfs*4|1|0.35|ENSG00000079263|chr2:230294310-230294310|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2301330566406 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 24.226 1 22.673 22.173 23.173 -1.5532 0 0 0 0.23664 1 4211 4211 3.2813 0 1 17267 25769 11334 11338 17321 17321 -0.0148856652166387 GQNYSGYSS 9 Unmodified _GQNYSGYSS_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24603271484375 2 481.696146 961.377739 0.27583 0.00013287 1.4246 0.00068621 1.7004 0.00081908 481.69716135501824 32.914 0.2462 30.767 30.655 30.902 -2.1468 10 6 2 0 0 0 0.46004 1 5746 5746 0.12781 0 1 431260 17268 25816 11335 11339 17322 17322 -0.10449436172314108 GQQEGQSRGQW 11 Unmodified _GQQEGQSRGQW_ 0 0 0 ENST00000467370.5_1_3:125824416-125834086:-|nuORF ENST00000467370.5_1_3:125824416-125834086:-|nuORF ENST00000467370.5_1_3:125824416-125834086:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7738037109375 2 630.789432 1259.56431 NaN NaN NaN NaN NaN NaN NaN 118.92 1 114.52 114.02 115.02 -4.4088 0 0 0 0.22943 1 22886 22886 8.7454 1.4562 1 17269 10146 11336 11340 17323 17323 -0.055088192839548356 GQQELNNL 8 Unmodified _GQQELNNL_ 0 0 0 KIFC1|p.K207N|1|0.43|ENSG00000237649|chr6:33403994-33403994|G/T|missense_variant KIFC1|p.K207N|1|0.43|ENSG00000237649|chr6:33403994-33403994|G/T|missense_variant KIFC1|p.K207N|1|0.43|ENSG00000237649|chr6:33403994-33403994|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2306823730469 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 24.487 1 22.953 22.453 23.453 -1.5342 0 0 0 0.23899 1 3988 3988 1.3295 0.36726 1 17270 12004 11337 11341 17324 17324 -0.0148856652166387 GQQTTAHS 8 Unmodified _GQQTTAHS_ 0 0 0 KCP|p.E906Kfs*119|1|0.14|ENSG00000135253|chr7:128885242-128885242|G/-|frameshift_variant;KCP|p.D914Tfs*111|1|0.3|ENSG00000135253|chr7:128885218-128885218|G/-|frameshift_variant;KCP|p.Q841Ifs*185|1|0.15|ENSG00000135253|chr7:128886727-128886728|-/TC|frameshift_variant;nc|ENSG00000135253|Q6ZWJ8-4|KCP;KCP|p.S1006Afs*19|1|0.32|ENSG00000135253|chr7:128884051-128884051|G/-|frameshift_variant;nc|ENSG00000135253|Q6ZWJ8|KCP;ENSG00000135253|ENST00000610776|KCP KCP|p.E906Kfs*119|1|0.14|ENSG00000135253|chr7:128885242-128885242|G/-|frameshift_variant KCP|p.E906Kfs*119|1|0.14|ENSG00000135253|chr7:128885242-128885242|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.1930847167969 2 415.193574 828.372594 NaN NaN NaN NaN NaN NaN NaN 45.766 1 45.766 45.266 46.266 0 0 0 0 0.19342 1 8609 8609 26.884 2.2098 1 17271 11984 11338 11342 17325 17325 -0.04845695244284798 GQREHGPR 8 Unmodified _GQREHGPR_ 0 0 0 REV__ENST00000361658.6_1_17:19770872-19771034:-|nuORF REV__ENST00000361658.6_1_17:19770872-19771034:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 469.2530517578125 2 468.741557 935.468561 -0.039977 -1.8739E-05 0.59612 0.00027943 0.55615 0.00026069 468.74165457022536 81.064 0.63881 77.225 76.835 77.474 -3.8392 31 17 2 0 0 0 8448 1 15418 15418 3.2813 0 1 773720 + 17272 20886 11339 11343 17326 17326 -0.0017550261353562746 GQREHGPR 8 Unmodified _GQREHGPR_ 0 0 0 REV__ENST00000361658.6_1_17:19770872-19771034:-|nuORF REV__ENST00000361658.6_1_17:19770872-19771034:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 468.741557 935.468561 -0.027676 -1.2973E-05 0.69412 0.00032537 0.66645 0.00031239 468.74173073042834 80.656 0.62453 77.099 76.851 77.475 -3.557 -0.10158 4.4423E-05 NaN 3.2813 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1141700 + 17273 20886 11339 11343 -0.0017550261353562746 GQREHGPR 8 Unmodified _GQREHGPR_ 0 0 0 REV__ENST00000361658.6_1_17:19770872-19771034:-|nuORF REV__ENST00000361658.6_1_17:19770872-19771034:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 468.741557 935.468561 -0.039977 -1.8739E-05 0.59612 0.00027943 0.55615 0.00026069 468.74165457022536 81.064 0.63881 77.225 76.835 77.474 -3.8392 0.024762 -4.7451E-05 NaN 3.2813 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 773720 + 17274 20886 11339 11343 -0.0017550261353562746 GQREHGPR 8 Unmodified _GQREHGPR_ 0 0 0 REV__ENST00000361658.6_1_17:19770872-19771034:-|nuORF REV__ENST00000361658.6_1_17:19770872-19771034:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 468.741557 935.468561 -0.20131 -9.4361E-05 0.65046 0.0003049 0.44915 0.00021054 468.74179423488954 80.965 0.69724 77.277 76.895 77.592 -3.6879 0.076821 3.4857E-06 NaN 3.2813 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1017000 + 17275 20886 11339 11343 -0.0017550261353562746 GQRIDEQLQ 9 Unmodified _GQRIDEQLQ_ 0 0 0 REV__ENSG00000119906|ENST00000238961|SLF2 REV__ENSG00000119906|ENST00000238961|SLF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.781494140625 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 104.48 1 100.14 99.637 100.64 -4.346 0 0 0 0.19657 1 20017 20017 4.897 3.6822 1 + 17276 15601 11340 11344 17327 17327 0.0071846546118194965 GQRKGMRF 8 Unmodified _GQRKGMRF_ 0 0 0 ENSG00000150712|ENST00000382142|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2647399902344 2 490.266353 978.518153 NaN NaN NaN NaN NaN NaN NaN 80.971 1 77.414 76.914 77.914 -3.557 0 0 0 0.23664 1 15810 15810 3.2813 0 1 17277 4834 11341 11345 17328 17328 0.02803489070925025 GQRSNPAW 8 Unmodified _GQRSNPAW_ 0 0 0 TNRC6C|p.N615Kfs*8|1|0.25|ENSG00000078687|chr17:78050898-78050899|-/A|frameshift_variant;TNRC6C|p.N615Mfs*45|3|0.36|ENSG00000078687|chr17:78050899-78050899|A/-|frameshift_variant;TNRC6C|p.E657Rfs*3|1|0.32|ENSG00000078687|chr17:78051026-78051026|G/-|frameshift_variant;TNRC6C|p.K926Rfs*3|1|0.18|ENSG00000078687|chr17:78067919-78067919|A/-|frameshift_variant;TNRC6C|p.G923Dfs*6|2|0.46|ENSG00000078687|chr17:78067906-78067906|A/-|frameshift_variant;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C;nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C TNRC6C|p.N615Kfs*8|1|0.25|ENSG00000078687|chr17:78050898-78050899|-/A|frameshift_variant TNRC6C|p.N615Kfs*8|1|0.25|ENSG00000078687|chr17:78050898-78050899|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22509765625 2 458.225208 914.435863 0.94867 0.0004347 -0.87195 -0.00039955 0.07672 3.5155E-05 458.2248049564114 26.66 0.33653 24.878 24.76 25.096 -1.7821 16 9 2 0 0 0 8448 1 4755 4755 3.2813 0 1 627970 17278 1584 11342 11346 17329 17329 -0.02477709736399447 GQSEVLMTMDM 11 Unmodified _GQSEVLMTMDM_ 0 0 0 REV__STX1A|p.A220T|1|0.26|ENSG00000106089|chr7:73702865-73702865|C/T|missense_variant REV__STX1A|p.A220T|1|0.26|ENSG00000106089|chr7:73702865-73702865|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7659912109375 2 621.264167 1240.51378 0.42157 0.00026191 -1.1666 -0.00072475 -0.74501 -0.00046285 621.2636387127894 84.59 2.9949 80.681 80.041 83.036 -3.9093 268 85 6 0 0 0 0.563 1 16012 16012 1.4074 1.2354 1 678110000 + 17279 24748 11343 11347 17330 17330 -0.09685569039834263 GQSFRGVLSD 10 Unmodified _GQSFRGVLSD_ 0 0 0 ENST00000563594.5_1_16:90032383-90032806:+|nuORF ENST00000563594.5_1_16:90032383-90032806:+|nuORF ENST00000563594.5_1_16:90032383-90032806:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2688598632812 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 59.158 1 59.158 58.658 59.658 0 0 0 0 2.8426 1 11333 11333 10.151 1.995 1 17280 11336 11344 11348 17331 17331 -0.004609195675357114 GQSIQEPKEA 10 Unmodified _GQSIQEPKEA_ 0 0 0 ENSG00000101812|ENST00000675318|H2BW2;nc|ENSG00000101812|P0C1H6|H2BW2 ENSG00000101812|ENST00000675318|H2BW2 ENSG00000101812|ENST00000675318|H2BW2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7749633789062 2 543.774928 1085.5353 0.23273 0.00012655 -0.22943 -0.00012476 0.0033009 1.7949E-06 543.7748165137945 15.177 0.41932 15.177 15.018 15.438 0 38 11 4 0 0 0 0.59736 1 2335 2335 19.362 0 1 58935000 17281 2086 11345 11349 17332 17332 -0.004043566329528403 GQSPPCRY 8 Unmodified _GQSPPCRY_ 0 0 0 REV__ENST00000494443.5_1_X:153608322-153608766:+|nuORF REV__ENST00000494443.5_1_X:153608322-153608766:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76416015625 2 454.20817 906.401786 NaN NaN NaN NaN NaN NaN NaN 64.398 1 61.401 60.901 61.901 -2.9975 0 0 0 0.22934 1 12454 12454 3.5871 0 1 + 17282 22241 11346 11350 17333 17333 -0.0551587421965678 GQTGVIRSV 9 Unmodified _GQTGVIRSV_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2393798828125 2 458.764166 915.513779 -0.11842 -5.4328E-05 0.5328 0.00024443 0.41438 0.0001901 458.76434853229813 46.194 0.59061 43.353 43.068 43.659 -2.8409 39 16 3 0 0 0 0.30018 1 8713 8713 43.982 1.8873 1 5811100 17283 7250 11347 11351 17334 17334 0.052643031289903774 GQTGVIRSV 9 Unmodified _GQTGVIRSV_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2376708984375 2 458.764166 915.513779 -0.061272 -2.8109E-05 0.48232 0.00022127 0.42105 0.00019316 458.7643338957429 46.333 0.659 43.468 43.102 43.761 -2.8653 38 18 3 0 0 0 0.34246 1 8397 8397 47.594 5.4998 1 4972600 17284 7250 11347 11351 17335 17335 0.052643031289903774 GQTGVIRSV 9 Unmodified _GQTGVIRSV_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23773193359375 2 458.764166 915.513779 -0.10349 -4.748E-05 0.58225 0.00026712 0.47875 0.00021964 458.76441105480654 46.264 0.65599 43.398 43.097 43.753 -2.8666 43 18 3 0 0 0 0.25795 1 8424 8424 47.732 1.711 1 3543000 17285 7250 11347 11351 17336 17336 0.052643031289903774 GQVERFETV 9 Unmodified _GQVERFETV_ 0 0 0 ENST00000503773.6_1_5:55236912-55256289:-|nuORF;nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST ENST00000503773.6_1_5:55236912-55256289:-|nuORF ENST00000503773.6_1_5:55236912-55256289:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2847900390625 2 532.772188 1063.52982 0.06125 3.2632E-05 -0.16768 -8.9335E-05 -0.10643 -5.6702E-05 532.7721609170225 66.024 0.37899 62.977 62.776 63.155 -3.047 15 10 2 0 0 0 0.58395 1 12804 12804 22.658 9.6156 1 1069300 17286 3847 11348 11352 17337 17337 0.0005996457521177945 GQVERFETV 9 Unmodified _GQVERFETV_ 0 0 0 ENST00000503773.6_1_5:55236912-55256289:-|nuORF;nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST ENST00000503773.6_1_5:55236912-55256289:-|nuORF ENST00000503773.6_1_5:55236912-55256289:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2734985351562 2 532.772188 1063.52982 0.6608 0.00035206 -0.80976 -0.00043142 -0.14895 -7.9358E-05 532.7717633675563 66.392 0.42087 62.896 62.727 63.148 -3.4965 17 11 2 0 0 0 0.39591 1 12479 12479 26.021 9.8716 1 872220 17287 3847 11348 11352 17338 17338 0.0005996457521177945 GQVLHLKNA 9 Unmodified _GQVLHLKNA_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.G3718Afs*6|1|0.04|ENSG00000143341|chr1:186113995-186113995|G/-|frameshift_variant;HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant;HMCN1|p.Y2955Ifs*3|1|0.29|ENSG00000143341|chr1:186082933-186082934|-/A|frameshift_variant;HMCN1|p.L3491Hfs*10|1|0.12|ENSG00000143341|chr1:186095419-186095420|-/ATAT|frameshift_variant nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2657775878906 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 95.373 1 91.182 90.682 91.682 -4.1911 0 0 0 0.23508 1 18201 18201 10.824 1.4408 1 17288 4474 11349 11353 17339 17339 0.07092582399991443 GQVQQQIQ 8 Unmodified _GQVQQQIQ_ 0 0 0 REV__nc|ENSG00000001167|P23511-2|NFYA REV__nc|ENSG00000001167|P23511-2|NFYA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2461853027344 2 464.745973 927.477394 0.91648 0.00042593 -1.4843 -0.00068982 -0.56781 -0.00026389 464.7452584650176 24.385 0.69278 22.737 22.507 23.199 -1.6482 22 19 2 0 0 0 8448 1 4216 4216 1.3295 0 1 365590 + 17289 23921 11350 11354 17340 17340 0.010754262322848263 GQVTELAVY 9 Unmodified _GQVTELAVY_ 0 0 0 REV__nc|ENSG00000164066|Q9ULD6-4|INTU REV__nc|ENSG00000164066|Q9ULD6-4|INTU MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2586669921875 2 490.258382 978.502212 0.14639 7.1771E-05 0.074131 3.6343E-05 0.22052 0.00010811 490.2583593057579 38.477 0.49027 36.035 35.704 36.195 -2.4419 25 13 3 0 0 0 0.25976 1 6834 6834 17.572 5.3313 1 2587100 + 17290 17643 11351 11355 17341 17341 0.012100613149982564 GQWARSGGP 9 Unmodified _GQWARSGGP_ 0 0 0 REV__COL20A1|p.P1149Lfs*53|1|0.06|ENSG00000101203|chr20:63326135-63326135|C/-|frameshift_variant REV__COL20A1|p.P1149Lfs*53|1|0.06|ENSG00000101203|chr20:63326135-63326135|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2256164550781 2 458.225208 914.435863 -0.012695 -5.8172E-06 -1.0434 -0.00047811 -1.0561 -0.00048393 458.22490999706287 50.622 0.51848 47.577 47.356 47.875 -3.0453 21 14 2 0 0 0 0.45972 1 9255 9255 8.1555 7.3106 1 503700 + 17291 13480 11352 11356 17342 17342 -0.024777097363767098 GQYESWNY 8 Unmodified _GQYESWNY_ 0 0 0 DNAJC10|p.R119H|3|0.19|ENSG00000077232|chr2:182720158-182720158|G/A|missense_variant;nc|ENSG00000077232|Q8IXB1-3|DNAJC10;DNAJC10|p.N376Kfs*2|1|0.35|ENSG00000077232|chr2:182741286-182741287|-/A|frameshift_variant;DNAJC10|p.P639Qfs*22|1|0.47|ENSG00000077232|chr2:182757788-182757788|T/-|frameshift_variant;nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10 DNAJC10|p.R119H|3|0.19|ENSG00000077232|chr2:182720158-182720158|G/A|missense_variant DNAJC10|p.R119H|3|0.19|ENSG00000077232|chr2:182720158-182720158|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.677490234375 2 523.714339 1045.41412 -0.42459 -0.00022237 0.22769 0.00011925 -0.1969 -0.00010312 523.7146106718824 35.935 0.35177 33.683 33.466 33.818 -2.2527 12 9 2 0 0 0 0.69713 1 6333 6333 14.838 0.93222 1 585220 17292 873 11353 11357 17343 17343 -0.10676559275611908 GRAALDLQPE 10 Unmodified _GRAALDLQPE_ 0 0 0 REV__ENST00000260056.6_1_11:82708357-82745471:-|nuORF REV__ENST00000260056.6_1_11:82708357-82745471:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.56024169921875 3 357.192734 1068.55637 -1.3278 -0.00047429 -0.54754 -0.00019558 -1.8754 -0.00066987 357.1922531756651 21.852 1.4451 20.131 19.779 21.224 -1.7211 60 41 3 0 0 0 0.51405 1 3465 3465 3.8763 0.80407 1 984840 + 17293 20154 11354 11358 17344 17344 0.024836534665837462 GRDDDDDDGD 10 Unmodified _GRDDDDDDGD_ 0 0 0 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7733154296875 2 547.678879 1093.3432 NaN NaN NaN NaN NaN NaN NaN 161.26 1 156.47 155.97 156.97 -4.7952 0 0 0 0.22588 1 32071 32071 1.4819 0.79152 1 + 17294 15037 11355 11359 17345 17345 -0.19973348841745064 GRELVPVSPAV 11 Unmodified _GRELVPVSPAV_ 0 0 0 ENST00000540088.1_1_12:65004304-65005331:+|nuORF ENST00000540088.1_1_12:65004304-65005331:+|nuORF ENST00000540088.1_1_12:65004304-65005331:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2194519042969 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 43.525 1 40.806 40.306 41.306 -2.7191 0 0 0 0.21075 1 8160 8160 16.275 4.047 1 17295 11065 11356 11360 17346 17346 0.08329389914410967 GRERAANR 8 Unmodified _GRERAANR_ 0 0 0 ENST00000445877.5_1_9:86595660-86614660:+|nuORF ENST00000445877.5_1_9:86595660-86614660:+|nuORF ENST00000445877.5_1_9:86595660-86614660:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25384521484375 2 465.254831 928.49511 NaN NaN NaN NaN NaN NaN NaN 148.46 1 148.46 147.96 148.96 0 0 0 0 0.23312 1 29712 29712 6.2058 0 1 17296 9935 11357 11361 17347 17347 0.02800186277784178 GRFDKGNIWS 10 Unmodified _GRFDKGNIWS_ 0 0 0 ENST00000495714.1_1_7:36447357-36456706:+|nuORF;nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN ENST00000495714.1_1_7:36447357-36456706:+|nuORF ENST00000495714.1_1_7:36447357-36456706:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2640991210938 2 590.298904 1178.58326 NaN NaN NaN NaN NaN NaN NaN 102.76 1 98.437 97.937 98.937 -4.3208 0 0 0 0.22588 1 19673 19673 10.151 0.076642 1 17297 1078 11358 11362 17348 17348 0.0011076207774749491 GRFSCPVPV 9 Unmodified _GRFSCPVPV_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23675537109375 2 481.249837 960.485122 -0.20207 -9.7244E-05 1.5963 0.00076822 1.3942 0.00067098 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 0.38188 2 7650 7650;7772 26.884 7.4447 1 85144000 + 17298 15439 11359 11363 17349;17350 17349 0.0032986222820454714 GRFSCPVPV 9 Unmodified _GRFSCPVPV_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2482604980469 2 481.249837 960.485122 0.021637 1.0413E-05 1.4834 0.00071387 1.505 0.00072429 481.2503997935835 40.302 3.026 37.762 36.657 39.683 -2.5398 141 85 2 0 0 0 0.38188 2 7464 7420;7464 26.884 5.3467 1 101380000 + 17299 15439 11359 11363 17351;17352 17352 0.0032986222820454714 GRFSCPVPV 9 Unmodified _GRFSCPVPV_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24700927734375 2 481.249837 960.485122 0.039846 1.9176E-05 1.5499 0.00074587 1.5897 0.00076505 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 0.42844 3 7375 7020;7375;7416 24.021 3.5669 1 69706000 + 17300 15439 11359 11363 17353;17354;17355 17354 0.0032986222820454714 GRGDMPLGRQ 10 Unmodified _GRGDMPLGRQ_ 0 0 0 REV__ENSG00000177613|ENST00000331173|CSTF2T REV__ENSG00000177613|ENST00000331173|CSTF2T MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7794189453125 2 543.777282 1085.54001 NaN NaN NaN NaN NaN NaN NaN 149.04 1 143.98 143.48 144.48 -5.0595 0 0 0 2.8426 1 28877 28877 0.26539 0 1 + 17301 18566 11360 11364 17356 17356 0.0006624902882776951 GRGFSLKA 8 Unmodified _GRGFSLKA_ 0 0 0 ZNF337|p.C518Lfs*33|1|0.34|ENSG00000130684|chr20:25675737-25675738|-/A|frameshift_variant;nc|ENSG00000130684|Q9Y3M9-2|ZNF337;ENSG00000130684|ENST00000252979|ZNF337 ZNF337|p.C518Lfs*33|1|0.34|ENSG00000130684|chr20:25675737-25675738|-/A|frameshift_variant ZNF337|p.C518Lfs*33|1|0.34|ENSG00000130684|chr20:25675737-25675738|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 418.2435607910156 2 418.24287 834.471186 NaN NaN NaN NaN NaN NaN NaN 69.106 1 69.106 68.606 69.606 0 0 0 0 0.21486 1 13373 13373 2.0598 0 1 17302 3625 11361 11365 17357 17357 0.047329527914257596 GRGFVPASE 9 Unmodified _GRGFVPASE_ 0 0 0 ENSG00000254470|ENST00000532090|AP5B1 ENSG00000254470|ENST00000532090|AP5B1 ENSG00000254470|ENST00000532090|AP5B1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2344970703125 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 133.33 1 128.69 128.19 129.19 -4.6399 0 0 0 0.19674 1 26286 26286 0.12781 0 1 17303 7925 11362 11366 17358 17358 -0.006559587964261482 GRGGAQGS 8 Unmodified _GRGGAQGS_ 0 0 0 ENST00000598375.5_1_19:18699853-18700318:+|nuORF ENST00000598375.5_1_19:18699853-18700318:+|nuORF ENST00000598375.5_1_19:18699853-18700318:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.1441650390625 2 345.169902 688.32525 NaN NaN NaN NaN NaN NaN NaN 64.093 1 61.096 60.596 61.596 -2.9975 0 0 0 0.23899 1 12392 12392 1.3295 0.36726 1 17304 11685 11363 11367 17359 17359 -0.03137929724607602 GRGIEALLSY 10 Unmodified _GRGIEALLSY_ 0 0 0 REV__STK35|p.E487Ifs*22|1|0.07|ENSG00000125834|chr20:2117231-2117232|-/ATAAT|frameshift_variant REV__STK35|p.E487Ifs*22|1|0.07|ENSG00000125834|chr20:2117231-2117232|-/ATAAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 73.522 1 70.211 69.711 70.711 -3.3107 0 0 0 0.22588 1 14334 14334 3.3196 0.82116 1 + 17305 15835 11364 11368 17360 17360 0.0461712798901317 GRGPPFWL 8 Unmodified _GRGPPFWL_ 0 0 0 AEBP1|p.G73Afs*219|1|0.17|ENSG00000106624|chr7:44104878-44104878|G/-|frameshift_variant AEBP1|p.G73Afs*219|1|0.17|ENSG00000106624|chr7:44104878-44104878|G/-|frameshift_variant AEBP1|p.G73Afs*219|1|0.17|ENSG00000106624|chr7:44104878-44104878|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2533264160156 2 465.253237 928.491922 NaN NaN NaN NaN NaN NaN NaN 144.09 1 139.14 138.64 139.64 -4.9445 0 0 0 0.23366 1 27821 27821 1.7423 1.1154 1 17306 87 11365 11369 17361 17361 0.024815431710862867 GRHARFAHI 9 Unmodified _GRHARFAHI_ 0 0 0 REV__ENSG00000090372|ENST00000263280|STRN4 REV__ENSG00000090372|ENST00000263280|STRN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2709350585938 2 532.796666 1063.57878 -0.1352 -7.2032E-05 -1.1631 -0.00061968 -1.2983 -0.00069171 532.7960184934816 52.908 0.72567 50.024 49.625 50.35 -2.8837 47 20 3 0 0 0 0.46598 1 10027 10027 1.2148 0.33965 1 6927400 + 17307 14545 11366 11370 17362 17362 0.04953342445492126 GRHARFAHI 9 Unmodified _GRHARFAHI_ 0 0 0 REV__ENSG00000090372|ENST00000263280|STRN4 REV__ENSG00000090372|ENST00000263280|STRN4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.796666 1063.57878 0.0053309 2.8403E-06 -1.1594 -0.00061775 -1.1541 -0.00061491 532.7959802242206 53.197 0.78789 50.101 49.656 50.444 -3.0954 -0.062259 0.0002996 NaN 1.2148 60 22 4 NaN NaN NaN NaN 0 NaN NaN 0 5966500 + 17308 14545 11366 11370 0.04953342445492126 GRHLWRLW 8 Unmodified _GRHLWRLW_ 0 0 0 ENST00000521249.1_1_14:102697914-102698193:-|nuORF ENST00000521249.1_1_14:102697914-102698193:-|nuORF ENST00000521249.1_1_14:102697914-102698193:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2145690917969 3 375.213915 1122.61992 NaN NaN NaN NaN NaN NaN NaN 14.348 1 14.348 13.848 14.848 0 0 0 0 0.2396 1 2132 2132 0 0 1 17309 10841 11367 11371 17363 17363 0.0635110348496255 GRHPVWEV 8 Unmodified _GRHPVWEV_ 0 0 0 ENST00000504880.5_1_5:54992856-54993786:-|nuORF;SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|3|1|sense;ENSG00000214787|ENST00000651255|MS4A4E ENST00000504880.5_1_5:54992856-54993786:-|nuORF ENST00000504880.5_1_5:54992856-54993786:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2600402832031 2 490.259051 978.503549 NaN NaN NaN NaN NaN NaN NaN 36.365 1 33.971 33.471 34.471 -2.3938 0 0 0 0.23664 1 6715 6715 3.2813 3.2173 1 17310 7733 11368 11372 17364 17364 0.013437401944202065 GRITHGFQ 8 Unmodified _GRITHGFQ_ 0 0 0 nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L nc|ENSG00000138767|Q96LI5-2|CNOT6L nc|ENSG00000138767|Q96LI5-2|CNOT6L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2320251464844 2 458.243401 914.472249 0.30321 0.00013895 -0.96368 -0.0004416 -0.66047 -0.00030266 458.2430133777562 28.388 1.8803 28.388 27.801 29.681 0 155 53 5 0 0 0 0.68128 1 5135 5135 16.942 0 1 86017000 17311 4209 11369 11373 17365 17365 0.011591671603241593 GRITHGFQ 8 Unmodified _GRITHGFQ_ 0 0 0 nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L nc|ENSG00000138767|Q96LI5-2|CNOT6L nc|ENSG00000138767|Q96LI5-2|CNOT6L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2408447265625 2 458.243401 914.472249 0.28314 0.00012975 -1.1911 -0.00054579 -0.90792 -0.00041605 458.24283143633727 30.194 1.8549 28.301 27.651 29.506 -1.8928 165 52 5 0 0 0 0.62642 1 5346 5346 20.454 3.5113 1 75773000 17312 4209 11369 11373 17366 17366 0.011591671603241593 GRKAEGTM 8 Unmodified _GRKAEGTM_ 0 0 0 ENST00000446403.1_3_6:33289775-33290721:-|nuORF;ENST00000266000.10_2_6:33289711-33290733:-|nuORF;ENST00000374542.9_2_6:33289711-33290733:-|nuORF;ENST00000414083.6_2_6:33289124-33290733:-|nuORF ENST00000446403.1_3_6:33289775-33290721:-|nuORF ENST00000446403.1_3_6:33289775-33290721:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2413635253906 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 13.095 1 11.974 11.474 12.474 -1.1206 0 0 0 0.2396 1 1623 1623 0.0082765 0 1 17313 8370 11370 11374 17367 17367 -0.012835877026077469 GRKAGPKI 8 Unmodified _GRKAGPKI_ 0 0 0 REV__ENST00000606697.5_1_5:43602969-43603065:-|nuORF REV__ENST00000606697.5_1_5:43602969-43603065:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 413.7645568847656 2 413.766512 825.518471 NaN NaN NaN NaN NaN NaN NaN 7.0801 1 6.0653 5.5653 6.5653 -1.0148 0 0 0 0.2396 1 539 539 0.12286 0 1 + 17314 23461 11371 11375 17368 17368 0.09873232062398074 GRKDLVDYL 9 Unmodified _GRKDLVDYL_ 0 0 0 ENSG00000172296|ENST00000399002|SPTLC3 ENSG00000172296|ENST00000399002|SPTLC3 ENSG00000172296|ENST00000399002|SPTLC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2023010253906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 123.02 1 118.29 117.79 118.79 -4.731 0 0 0 0.21768 1 23632 23632 18.373 2.5259 1 17315 6206 11372 11376 17369 17369 0.046171279889904326 GRKEGFPD 8 Unmodified _GRKEGFPD_ 0 0 0 REV__ENST00000513342.5_1_17:46990150-47004493:+|nuORF REV__ENST00000513342.5_1_17:46990150-47004493:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7543029785156 2 453.227417 904.44028 -0.42355 -0.00019196 0.67783 0.00030721 0.25428 0.00011525 453.22771702133247 38.688 1.0928 36.139 35.837 36.93 -2.5491 80 30 4 0 0 0 8448 1 7216 7216 0.68139 0 1 24540000 + 17316 17363 11373 11377 17370 17370 -0.01576245313481195 GRKKKRRPWRD 11 Unmodified _GRKKKRRPWRD_ 0 0 0 ENST00000599111.5_1_19:48608624-48609786:-|nuORF ENST00000599111.5_1_19:48608624-48609786:-|nuORF ENST00000599111.5_1_19:48608624-48609786:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.367919921875 2 741.947467 1481.88038 NaN NaN NaN NaN NaN NaN NaN 145.09 1 140.14 139.64 140.64 -4.9445 0 0 0 0.23698 1 28041 28041 2.4985 0 1 17317 11689 11374 11378 17371 17371 0.15871643745003894 GRKRRHRL 8 Unmodified _GRKRRHRL_ 0 0 0 nc|ENSG00000286105|A0A494BZU4|TMEM217B;ENST00000356757.6_1_6:37180235-37180745:-|nuORF nc|ENSG00000286105|A0A494BZU4|TMEM217B nc|ENSG00000286105|A0A494BZU4|TMEM217B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2326354980469 3 360.23208 1077.67441 NaN NaN NaN NaN NaN NaN NaN 69.139 1 65.749 65.249 66.249 -3.3903 0 0 0 0.21486 1 13068 13068 0.40072 0.050084 1 17318 8970 11375 11379 17372 17372 0.13868115356399358 GRKVIHLTY 9 Unmodified _GRKVIHLTY_ 0 0 0 REV__ENST00000597009.5_1_19:43236759-43244536:-|nuORF REV__ENST00000597009.5_1_19:43236759-43244536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.784423828125 2 543.824558 1085.63456 NaN NaN NaN NaN NaN NaN NaN 153.97 1 149.2 148.7 149.7 -4.7684 0 0 0 0.23508 1 30598 30598 12.532 1.7076 1 + 17319 19706 11376 11380 17373 17373 0.09517130842482402 GRLDCLESGP 10 Unmodified _GRLDCLESGP_ 0 0 0 REV__ENST00000391705.7_1_19:57862995-57865151:+|nuORF REV__ENST00000391705.7_1_19:57862995-57865151:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.685791015625 2 523.750398 1045.48624 NaN NaN NaN NaN NaN NaN NaN 37.397 1 35.06 34.56 35.56 -2.3375 0 0 0 0.22527 1 6618 6618 21.537 1.0834 1 + 17320 21200 11377 11381 17374 17374 -0.034679681935585904 GRLFNHTA 8 Unmodified _GRLFNHTA_ 0 0 0 REV__nc|ENSG00000243708|P0C869-4|PLA2G4B REV__nc|ENSG00000243708|P0C869-4|PLA2G4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2248229980469 2 458.243401 914.472249 0.30321 0.00013895 -0.96368 -0.0004416 -0.66047 -0.00030266 458.2430133777562 28.388 1.8803 28.388 27.801 29.681 0 155 53 5 0 0 0 0.62642 1 5179 5179 20.454 3.5113 1 86017000 + 17321 19802 11378 11382 17375 17375 0.011591671603127907 GRLHGTLLL 9 Unmodified _GRLHGTLLL_ 0 0 0 REV__ENST00000266771.9_1_12:129299613-129308093:-|nuORF REV__ENST00000266771.9_1_12:129299613-129308093:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 327.20733642578125 3 327.206426 978.597449 NaN NaN NaN NaN NaN NaN NaN 175.86 1 170.99 170.49 171.49 -4.8739 0 0 0 0.23508 1 34974 34974 1.0715 0 1 + 17322 20254 11379 11383 17376 17376 0.10729459296726418 GRLLPTSLPD 10 Unmodified _GRLLPTSLPD_ 0 0 0 ENST00000375960.6_1_9:88969241-88969367:-|nuORF ENST00000375960.6_1_9:88969241-88969367:-|nuORF ENST00000375960.6_1_9:88969241-88969367:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.049072265625 3 356.873113 1067.59751 -0.41267 -0.00014727 0.49178 0.0001755 0.07911 2.8232E-05 356.87322906926886 56.563 1.6918 53.668 52.999 54.69 -2.8944 120 48 3 0 0 0 0.91149 1 10756 10756 0.62683 0 1 7729100 17323 9243 11380 11384 17377 17377 0.06641414506043475 GRLSLRARVR 10 Unmodified _GRLSLRARVR_ 0 0 0 ENST00000493228.1_1_10:72647718-72647919:-|nuORF ENST00000493228.1_1_10:72647718-72647919:-|nuORF ENST00000493228.1_1_10:72647718-72647919:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 592.324951171875 2 592.378355 1182.74216 NaN NaN NaN NaN NaN NaN NaN 168.56 1 168.56 168.06 169.06 0 0 0 0 2.8426 1 34532 34532 6.6304 1.7334 1 17324 10543 11381 11385 17378 17378 0.15809520496554796 GRMWIVWV 8 Unmodified _GRMWIVWV_ 0 0 0 REV__CD1E|p.M243I|1|0.34|ENSG00000158488|chr1:158355930-158355930|G/A|missense_variant REV__CD1E|p.M243I|1|0.34|ENSG00000158488|chr1:158355930-158355930|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 349.51080322265625 3 349.52499 1045.55314 -0.25777 -9.0096E-05 0.23481 8.2073E-05 -0.022954 -8.023E-06 349.5249775546965 29.123 0.31249 27.126 27.007 27.319 -1.9962 12 8 2 0 0 0 0.8956 1 4918 4918 0.12286 0.11459 1 341480 + 17325 13327 11382 11386 17379 17379 0.03218731878860126 GRNAPSTF 8 Unmodified _GRNAPSTF_ 0 0 0 REV__ENSG00000147251|ENST00000276202|DOCK11 REV__ENSG00000147251|ENST00000276202|DOCK11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2508850097656 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 87.393 1 83.397 82.897 83.897 -3.9953 0 0 0 0.23664 1 16642 16642 3.2813 0 1 + 17326 16930 11383 11387 17380 17380 -0.016205144849436692 GRNDGGGG 8 Unmodified _GRNDGGGG_ 0 0 0 REV__ENST00000377046.7_1_11:65479656-65479908:+|nuORF REV__ENST00000377046.7_1_11:65479656-65479908:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.2039489746094 2 345.151709 688.288865 NaN NaN NaN NaN NaN NaN NaN 25.707 1 24.072 23.572 24.572 -1.6347 0 0 0 0.2396 1 4236 4236 0.30703 0 1 + 17327 21086 11384 11388 17381 17381 -0.06774806621308471 GRNFPRFNS 9 Unmodified _GRNFPRFNS_ 0 0 0 REV__ENST00000393284.7_3_12:75672778-75676062:-|nuORF REV__ENST00000393284.7_3_12:75672778-75676062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77734375 2 547.778139 1093.54173 NaN NaN NaN NaN NaN NaN NaN 76.556 1 72.922 72.422 73.422 -3.6337 0 0 0 0.18489 1 14575 14575 17.113 9.6358 1 + 17328 21233 11385 11389 17382 17382 -0.001303738909200547 GRPGLRAVH 9 Unmodified _GRPGLRAVH_ 0 0 0 REV__ENST00000264990.10_1_3:132379039-132379408:-|nuORF REV__ENST00000264990.10_1_3:132379039-132379408:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7837219238281 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 143.04 1 143.04 142.54 143.54 0 0 0 0 0.19649 1 28533 28533 0.40827 0 1 + 17329 20235 11386 11390 17383 17383 0.07466537696927844 GRPLLCFR 8 Unmodified _GRPLLCFR_ 0 0 0 ENST00000575282.5_1_17:78187814-78194112:-|nuORF ENST00000575282.5_1_17:78187814-78194112:-|nuORF ENST00000575282.5_1_17:78187814-78194112:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25274658203125 2 481.273647 960.532741 NaN NaN NaN NaN NaN NaN NaN 43.521 1 40.755 40.255 41.255 -2.7661 0 0 0 0.21486 1 7861 7861 8.5933 0 1 17330 11453 11387 11391 17384 17384 0.050895612190629436 GRPWRPLSGGP 11 Unmodified _GRPWRPLSGGP_ 0 0 0 REV__ENST00000495828.1_1_1:44804991-44820908:-|nuORF REV__ENST00000495828.1_1_1:44804991-44820908:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2687377929688 2 590.322714 1178.63087 0.48835 0.00028828 -1.3892 -0.00082009 -0.90087 -0.00053181 590.3218845691003 105.86 0.56648 101.48 101.08 101.65 -4.3764 23 15 2 0 0 0 0.563 1 20273 20273 2.1236 0 1 2163800 + 17331 22383 11388 11392 17385 17385 0.04870461068571785 GRQNEKLDMYY 11 Unmodified _GRQNEKLDMYY_ 0 0 0 REV__ENSG00000185129|ENST00000331327|PURA REV__ENSG00000185129|ENST00000331327|PURA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 473.27569580078125 3 472.890726 1415.65035 -0.41232 -0.00019498 -2.4721 -0.001169 -2.8844 -0.001364 472.8895643516759 106.67 0.31142 102.41 102.18 102.49 -4.2638 11 8 2 0 0 0 0.65515 1 20983 20983 3.0723 0.59017 1 722400 + 17332 18944 11389 11393 17386 17386 -0.04084995493462884 GRQTKLKAY 9 Unmodified _GRQTKLKAY_ 0 0 0 REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|41|2|sense REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|41|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.284912109375 2 532.81419 1063.61383 -0.022243 -1.1851E-05 0.88696 0.00047258 0.86471 0.00046073 533.3164906526795 73.797 1.1197 70.433 69.972 71.092 -3.3643 47 31 2 0 0 0 0.68435 1 14479 14479 7.2892 0.56607 1 4346600 + 17333 23753 11390 11394 17387 17387 0.08456540462793782 GRQTKLKAY 9 Unmodified _GRQTKLKAY_ 0 0 0 REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|41|2|sense REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|41|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2735595703125 2 532.81419 1063.61383 0.58432 0.00031134 0.27801 0.00014813 0.86233 0.00045946 532.8140188942866 74.18 1.1383 70.504 70.07 71.208 -3.6764 44 32 2 0 0 0 0.68435 1 14075 14075 7.2892 0.18751 1 2711100 + 17334 23753 11390 11394 17388 17388 0.08456540462793782 GRRAVCRYYNN 11 Unmodified _GRRAVCRYYNN_ 0 0 0 nc|ENSG00000137491|O94956-4|SLCO2B1;nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1;nc|ENSG00000137491|O94956-2|SLCO2B1 nc|ENSG00000137491|O94956-4|SLCO2B1 nc|ENSG00000137491|O94956-4|SLCO2B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2290344238281 3 457.894805 1370.66259 0.514 0.00023536 -1.0087 -0.00046186 -0.49466 -0.0002265 457.8943068740301 99.446 0.62987 99.446 99.127 99.757 0 31 17 2 0 0 0 0.65515 1 19457 19457 3.0723 3.0461 1 2546300 17335 4087 11391 11395 17389 17389 -0.007919142397440737 GRRGFAHI 8 Unmodified _GRRGFAHI_ 0 0 0 REV__PLEKHA4|p.K42R|1|0.26|ENSG00000105559|chr19:48865570-48865570|T/C|missense_variant REV__PLEKHA4|p.K42R|1|0.26|ENSG00000105559|chr19:48865570-48865570|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.1747741699219 3 305.175349 912.504218 NaN NaN NaN NaN NaN NaN NaN 21.733 1 20.012 19.512 20.512 -1.7211 0 0 0 0.21486 1 3414 3414 0 0 1 + 17336 24484 11392 11396 17390 17390 0.04446579634111458 GRRIKYLRIWF 11 Unmodified _GRRIKYLRIWF_ 0 0 0 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 503.2982177734375 3 503.305134 1506.89357 0.27624 0.00013903 -1.2014 -0.00060468 -0.92518 -0.00046565 503.3041103073933 155.03 0.10654 149.78 149.69 149.79 -5.2526 4 2 2 0 0 0 0.66087 1 30061 30061 1.4551 1.4289 1 781510 + 17337 18006 11393 11397 17391 17391 0.1604008180438541 GRRLAWIETT 10 Unmodified _GRRLAWIETT_ 0 0 0 REV__ENST00000333070.4_1_1:32740021-32740953:+|nuORF REV__ENST00000333070.4_1_1:32740021-32740953:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2821044921875 2 601.835654 1201.65676 0.62042 0.00037339 -0.26138 -0.00015731 0.35904 0.00021608 601.8355244056659 42.771 0.45556 42.771 42.531 42.987 0 33 12 4 0 0 0 0.5313 1 8045 8045 0.26539 0 1 3610700 + 17338 20637 11394 11398 17392 17392 0.06399310520237123 GRRLKGAR 8 Unmodified _GRRLKGAR_ 0 0 0 nc|ENSG00000005238|Q7L5A3-3|ATOSB;nc|ENSG00000005238|Q7L5A3-2|ATOSB;ENSG00000005238|ENST00000322813|ATOSB nc|ENSG00000005238|Q7L5A3-3|ATOSB nc|ENSG00000005238|Q7L5A3-3|ATOSB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.1978454589844 3 305.198265 912.572966 NaN NaN NaN NaN NaN NaN NaN 95.595 1 91.714 91.214 92.214 -3.881 0 0 0 0.23899 1 18343 18343 1.3295 0 1 17339 988 11395 11399 17393 17393 0.11318243933828853 GRRLKGAR 8 Unmodified _GRRLKGAR_ 0 0 0 nc|ENSG00000005238|Q7L5A3-3|ATOSB;nc|ENSG00000005238|Q7L5A3-2|ATOSB;ENSG00000005238|ENST00000322813|ATOSB nc|ENSG00000005238|Q7L5A3-3|ATOSB nc|ENSG00000005238|Q7L5A3-3|ATOSB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.197509765625 3 305.198265 912.572966 NaN NaN NaN NaN NaN NaN NaN 96.782 1 92.863 92.363 93.363 -3.9194 0 0 0 0.23899 1 18575 18575 1.3295 0 1 17340 988 11395 11399 17394 17394 0.11318243933828853 GRRLKQRPTG 10 Unmodified _GRRLKQRPTG_ 0 0 0 ENST00000389253.8_2_19:10883199-10886384:+|nuORF ENST00000389253.8_2_19:10883199-10886384:+|nuORF ENST00000389253.8_2_19:10883199-10886384:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.3481140136719 3 390.2389 1167.69487 NaN NaN NaN NaN NaN NaN NaN 13.701 1 12.49 11.99 12.99 -1.2106 0 0 0 0.22588 1 1756 1756 1.7423 0.67081 1 17341 9354 11396 11400 17395 17395 0.11773241225523634 GRRRRQRWRRF 11 Unmodified _GRRRRQRWRRF_ 0 0 0 ENST00000525786.1_1_11:96120692-96123066:-|nuORF;ENST00000524836.1_1_11:96119342-96123066:-|nuORF ENST00000525786.1_1_11:96120692-96123066:-|nuORF ENST00000525786.1_1_11:96120692-96123066:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3732299804688 2 815.480331 1628.94611 NaN NaN NaN NaN NaN NaN NaN 172.49 1 172.49 171.99 172.99 0 0 0 0 0.22632 1 35613 35613 0.094841 0 1 17342 10888 11397 11401 17396 17396 0.15679477710546053 GRRRRQRWRRF 11 Unmodified _GRRRRQRWRRF_ 0 0 0 ENST00000525786.1_1_11:96120692-96123066:-|nuORF;ENST00000524836.1_1_11:96119342-96123066:-|nuORF ENST00000525786.1_1_11:96120692-96123066:-|nuORF ENST00000525786.1_1_11:96120692-96123066:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77978515625 3 543.989313 1628.94611 NaN NaN NaN NaN NaN NaN NaN 31.482 1 29.252 28.752 29.752 -2.2305 0 0 0 0.22632 1 5715 5715 0.094841 0.094841 1 17343 10888 11397 11401 17397 17397 0.15679477710546053 GRRRRQRWRRF 11 Unmodified _GRRRRQRWRRF_ 0 0 0 ENST00000525786.1_1_11:96120692-96123066:-|nuORF;ENST00000524836.1_1_11:96119342-96123066:-|nuORF ENST00000525786.1_1_11:96120692-96123066:-|nuORF ENST00000525786.1_1_11:96120692-96123066:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3672485351562 2 815.480331 1628.94611 NaN NaN NaN NaN NaN NaN NaN 170.25 1 165.34 164.84 165.84 -4.9149 0 0 0 0.22632 1 33655 33655 0.00056442 0.00056442 1 17344 10888 11397 11401 17398 17398 0.15679477710546053 GRRRRQRWRRF 11 Unmodified _GRRRRQRWRRF_ 0 0 0 ENST00000525786.1_1_11:96120692-96123066:-|nuORF;ENST00000524836.1_1_11:96119342-96123066:-|nuORF ENST00000525786.1_1_11:96120692-96123066:-|nuORF ENST00000525786.1_1_11:96120692-96123066:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.350830078125 2 815.480331 1628.94611 NaN NaN NaN NaN NaN NaN NaN 173.26 1 168.36 167.86 168.86 -4.8977 0 0 0 0.23698 1 34393 34393 0 0 1 17345 10888 11397 11401 17399 17399 0.15679477710546053 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4860229492188 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 103.01 1 103.01 102.51 103.51 0 0 0 0 0.22632 1 20239 20239 0 0 1 + 17346 23869 11398 11402 17400 17400 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4860229492188 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 103.02 1 103.02 102.52 103.52 0 0 0 0 0.23698 1 20240 20240 0 0 1 + 17347 23869 11398 11402 17401 17401 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4862060546875 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 115.82 1 115.82 115.32 116.32 0 0 0 0 0.22632 1 22801 22801 0 0 1 + 17348 23869 11398 11402 17402 17402 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4862060546875 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 115.84 1 115.84 115.34 116.34 0 0 0 0 0.23698 1 22804 22804 0 0 1 + 17349 23869 11398 11402 17403 17403 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4859619140625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 118.55 1 118.55 118.05 119.05 0 0 0 0 0.23698 1 23350 23350 0 0 1 + 17350 23869 11398 11402 17404 17404 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4865112304688 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 121.35 1 121.35 120.85 121.85 0 0 0 0 0.22632 1 23921 23921 0 0 1 + 17351 23869 11398 11402 17405 17405 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4865112304688 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 121.37 1 121.37 120.87 121.87 0 0 0 0 0.23698 1 23924 23924 0 0 1 + 17352 23869 11398 11402 17406 17406 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4859619140625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 124.43 1 124.43 123.93 124.93 0 0 0 0 0.22632 1 24535 24535 0 0 1 + 17353 23869 11398 11402 17407 17407 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4825439453125 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 145.4 1 145.4 144.9 145.9 0 0 0 0 0.23698 1 29057 29057 0.30703 0.30703 1 + 17354 23869 11398 11402 17408 17408 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4867553710938 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 154.79 1 154.79 154.29 155.29 0 0 0 0 0.23698 1 31024 31024 0.30703 0.30703 1 + 17355 23869 11398 11402 17409 17409 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4862670898438 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 158.8 1 158.8 158.3 159.3 0 0 0 0 0.22632 1 31885 31885 0 0 1 + 17356 23869 11398 11402 17410 17410 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4862670898438 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 158.82 1 158.82 158.32 159.32 0 0 0 0 0.23698 1 31888 31888 0 0 1 + 17357 23869 11398 11402 17411 17411 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4863891601562 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 125.6 1 121 120.5 121.5 -4.5984 0 0 0 0.22632 1 24763 24763 0 0 1 + 17358 23869 11398 11402 17412 17412 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4865112304688 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 31.877 1 29.851 29.351 30.351 -2.0264 0 0 0 0.22632 1 5515 5515 0 0 1 + 17359 23869 11398 11402 17413 17413 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4865112304688 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 31.89 1 29.863 29.363 30.363 -2.0264 0 0 0 0.23698 1 5517 5517 0 0 1 + 17360 23869 11398 11402 17414 17414 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4863891601562 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 102.6 1 98.28 97.78 98.78 -4.3208 0 0 0 0.22632 1 19645 19645 0.0072825 0.0072825 1 + 17361 23869 11398 11402 17415 17415 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4839477539062 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 163.75 1 158.7 158.2 159.2 -5.0446 0 0 0 0.22632 1 31886 31886 0.00056442 0 1 + 17362 23869 11398 11402 17416 17416 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4660034179688 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 169.46 1 164.53 164.03 165.03 -4.9295 0 0 0 0.23698 1 33464 33464 1.1933 1.1933 1 + 17363 23869 11398 11402 17417 17417 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4830322265625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 110.89 1 106.66 106.16 107.16 -4.2289 0 0 0 0.23698 1 21338 21338 0.30703 0.30703 1 + 17364 23869 11398 11402 17418 17418 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4869995117188 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 122.59 1 118.06 117.56 118.56 -4.5305 0 0 0 0.22632 1 23602 23602 0.026206 0.026206 1 + 17365 23869 11398 11402 17419 17419 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4854125976562 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 152.45 1 147.28 146.78 147.78 -5.1759 0 0 0 0.23698 1 29548 29548 0.30703 0.30703 1 + 17366 23869 11398 11402 17420 17420 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4688110351562 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 173.65 1 168.77 168.27 169.27 -4.881 0 0 0 0.22632 1 34533 34533 0 0 1 + 17367 23869 11398 11402 17421 17421 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.486328125 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 177.53 1 172.62 172.12 173.12 -4.9088 0 0 0 0.22632 1 35407 35407 0 0 1 + 17368 23869 11398 11402 17422 17422 0.1459429980470759 GRRRRRWRRHW 11 Unmodified _GRRRRRWRRHW_ 0 0 0 REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant REV__MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.486328125 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 177.55 1 172.64 172.14 173.14 -4.9088 0 0 0 0.23698 1 35409 35409 0 0 1 + 17369 23869 11398 11402 17423 17423 0.1459429980470759 GRSLNCTV 8 Unmodified _GRSLNCTV_ 0 0 0 nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000241119|ENST00000354728|UGT1A9;UGT1A7|p.K225Qfs*9|2|0.49|ENSG00000244122|chr2:233682602-233682603|-/T|frameshift_variant;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;ENSG00000244122|ENST00000373426|UGT1A7 nc|ENSG00000241119|O60656-2|UGT1A9 nc|ENSG00000241119|O60656-2|UGT1A9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25140380859375 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 87.002 1 83.275 82.775 83.775 -3.727 0 0 0 0.23312 1 17010 17010 6.2058 0 1 17370 7850 11399 11403 17424 17424 -0.012835877026077469 GRVDEGPQP 9 Unmodified _GRVDEGPQP_ 0 0 0 nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7439270019531 2 477.735606 953.456658 0.028965 1.3838E-05 -0.42664 -0.00020382 -0.39767 -0.00018998 477.7353892071314 24.884 0.58579 23.35 23.094 23.68 -1.5342 49 16 4 0 0 0 0.5059 1 4046 4046 19.257 3.4098 1 19758000 17371 1308 11400 11404 17425 17425 -0.021931641473884156 GRWKRSRRRRR 11 Unmodified _GRWKRSRRRRR_ 0 0 0 REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3732299804688 2 785.480331 1568.94611 NaN NaN NaN NaN NaN NaN NaN 163.32 1 163.32 162.82 163.82 0 0 0 0 0.23698 1 32908 32908 0.23584 0.23584 1 + 17372 21373 11401 11405 17426 17426 0.18439477710558094 GRWKRSRRRRR 11 Unmodified _GRWKRSRRRRR_ 0 0 0 REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3991088867188 2 785.480331 1568.94611 NaN NaN NaN NaN NaN NaN NaN 163.37 1 163.37 162.87 163.87 0 0 0 0 0.22632 1 32925 32925 0.094841 0.087559 1 + 17373 21373 11401 11405 17427 17427 0.18439477710558094 GRYDPERPP 9 Unmodified _GRYDPERPP_ 0 0 0 ENST00000508448.5_1_4:41937290-41940638:+|nuORF ENST00000508448.5_1_4:41937290-41940638:+|nuORF ENST00000508448.5_1_4:41937290-41940638:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7703247070312 2 543.76998 1085.52541 0.14353 7.8045E-05 0.013116 7.1319E-06 0.15664 8.5177E-05 543.7699900254216 26.679 1.1695 24.757 24.02 25.19 -1.9222 58 32 2 0 0 0 0.52396 1 4370 4370 18.146 2.2992 1 1279400 17374 10713 11402 11406 17428 17428 -0.013934998476770488 GRYHVIRKL 9 Unmodified _GRYHVIRKL_ 0 0 0 nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2;ENST00000513367.1_1_6:35855779-35888866:-|nuORF;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;SRPK1|p.I192Nfs*10|1|0.27|ENSG00000096063|chr6:35874243-35874244|-/T|frameshift_variant;SRPK1|p.I192Lfs*32|1|0.31|ENSG00000096063|chr6:35874244-35874244|T/-|frameshift_variant;SRPK2|p.V366Ifs*7|1|0.02|ENSG00000135250|chr7:105142419-105142422|CTAC/-|frameshift_variant;SRPK2|p.Q368Sfs*16|1|0.04|ENSG00000135250|chr7:105142416-105142417|-/AGGA|frameshift_variant;SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant;nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1 nc|ENSG00000135250|P78362|SRPK2 nc|ENSG00000135250|P78362|SRPK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.219482421875 3 381.236608 1140.688 -0.087081 -3.3198E-05 0.30066 0.00011462 0.21358 8.1426E-05 381.23658943723166 24.689 0.64161 24.689 24.371 25.013 0 38 18 3 0 0 0 0.066912 1 4255 4255 65.474 39.453 1 3031300 17375 3910 11403 11407 17429 17429 0.12327928344984684 GRYHVIRKL 9 Unmodified _GRYHVIRKL_ 0 0 0 nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2;ENST00000513367.1_1_6:35855779-35888866:-|nuORF;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;SRPK1|p.I192Nfs*10|1|0.27|ENSG00000096063|chr6:35874243-35874244|-/T|frameshift_variant;SRPK1|p.I192Lfs*32|1|0.31|ENSG00000096063|chr6:35874244-35874244|T/-|frameshift_variant;SRPK2|p.V366Ifs*7|1|0.02|ENSG00000135250|chr7:105142419-105142422|CTAC/-|frameshift_variant;SRPK2|p.Q368Sfs*16|1|0.04|ENSG00000135250|chr7:105142416-105142417|-/AGGA|frameshift_variant;SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant;nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1 nc|ENSG00000135250|P78362|SRPK2 nc|ENSG00000135250|P78362|SRPK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20849609375 3 381.236608 1140.688 0.80447 0.00030669 -0.49534 -0.00018884 0.30913 0.00011785 381.2364302434559 26.8 0.47849 25.018 24.794 25.272 -1.7821 38 13 4 0 0 0 0.11519 1 4738 4738 70.332 45.45 1 2607600 17376 3910 11403 11407 17430 17430 0.12327928344984684 GRYHVIRKL 9 Unmodified _GRYHVIRKL_ 0 0 0 nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2;ENST00000513367.1_1_6:35855779-35888866:-|nuORF;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;SRPK1|p.I192Nfs*10|1|0.27|ENSG00000096063|chr6:35874243-35874244|-/T|frameshift_variant;SRPK1|p.I192Lfs*32|1|0.31|ENSG00000096063|chr6:35874244-35874244|T/-|frameshift_variant;SRPK2|p.V366Ifs*7|1|0.02|ENSG00000135250|chr7:105142419-105142422|CTAC/-|frameshift_variant;SRPK2|p.Q368Sfs*16|1|0.04|ENSG00000135250|chr7:105142416-105142417|-/AGGA|frameshift_variant;SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant;nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1 nc|ENSG00000135250|P78362|SRPK2 nc|ENSG00000135250|P78362|SRPK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2107238769531 3 381.236608 1140.688 -0.58718 -0.00022386 1.0457 0.00039866 0.45851 0.0001748 381.23697955999 26.823 0.44624 24.901 24.709 25.155 -1.9222 27 12 3 0 0 0 0.8606 1 4483 4483 10.8 7.4799 1 1614700 17377 3910 11403 11407 17431 17431 0.12327928344984684 GRYHVIRKL 9 Unmodified _GRYHVIRKL_ 0 0 0 nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2;ENST00000513367.1_1_6:35855779-35888866:-|nuORF;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;SRPK1|p.I192Nfs*10|1|0.27|ENSG00000096063|chr6:35874243-35874244|-/T|frameshift_variant;SRPK1|p.I192Lfs*32|1|0.31|ENSG00000096063|chr6:35874244-35874244|T/-|frameshift_variant;SRPK2|p.V366Ifs*7|1|0.02|ENSG00000135250|chr7:105142419-105142422|CTAC/-|frameshift_variant;SRPK2|p.Q368Sfs*16|1|0.04|ENSG00000135250|chr7:105142416-105142417|-/AGGA|frameshift_variant;SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant;nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1 nc|ENSG00000135250|P78362|SRPK2 nc|ENSG00000135250|P78362|SRPK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 381.236608 1140.688 0.15374 5.8611E-05 0.26072 9.9395E-05 0.41446 0.00015801 381.23663014529075 26.575 0.45892 24.94 24.719 25.178 -1.6347 0.053096 5.7469E-05 NaN 65.474 36 12 4 NaN NaN NaN NaN 0 NaN NaN 0 2008200 17378 3910 11403 11407 0.12327928344984684 GRYIADHSY 9 Unmodified _GRYIADHSY_ 0 0 0 nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.25830078125 2 541.256705 1080.49886 NaN NaN NaN NaN NaN NaN NaN 124.19 1 119.62 119.12 120.12 -4.5757 0 0 0 0.23508 1 24486 24486 11.64 0.81637 1 17379 1244 11404 11408 17432 17432 -0.03817188739003541 GRYIADHSY 9 Unmodified _GRYIADHSY_ 0 0 0 nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2743530273438 2 541.256705 1080.49886 NaN NaN NaN NaN NaN NaN NaN 126.21 1 121.61 121.11 122.11 -4.5984 0 0 0 0.23508 1 24883 24883 11.64 0 1 17380 1244 11404 11408 17433 17433 -0.03817188739003541 GSAARRSG 8 Unmodified _GSAARRSG_ 0 0 0 ENST00000374078.5_1_20:34287208-34287334:+|nuORF ENST00000374078.5_1_20:34287208-34287334:+|nuORF ENST00000374078.5_1_20:34287208-34287334:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21148681640625 2 381.204276 760.393999 NaN NaN NaN NaN NaN NaN NaN 116.21 1 111.86 111.36 112.36 -4.3585 0 0 0 0.23782 1 22374 22374 0.12286 0 1 17381 9213 11405 11409 17434 17434 0.004217345751044377 GSAEMASIGP 10 Unmodified _GSAEMASIGP_ 0 0 0 REV__ENSG00000178502|ENST00000319121|KLHL11 REV__ENSG00000178502|ENST00000319121|KLHL11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2279357910156 2 460.213117 918.411682 NaN NaN NaN NaN NaN NaN NaN 74.398 1 71.034 70.534 71.534 -3.3643 0 0 0 0.22588 1 14513 14513 9.3831 0.035688 1 + 17382 18608 11406 11410 17435 17435 -0.05078731004914516 GSALIQETP 9 Unmodified _GSALIQETP_ 0 0 0 REV__CSTF1|p.F252Lfs*27|1|0.29|ENSG00000101138|chr20:56399074-56399074|T/-|frameshift_variant REV__CSTF1|p.F252Lfs*27|1|0.29|ENSG00000101138|chr20:56399074-56399074|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2401123046875 2 458.242732 914.470912 0.28314 0.00012975 0.26822 0.00012291 0.55135 0.00025265 458.24283143633727 30.194 1.8549 28.301 27.651 29.506 -1.8928 165 52 5 0 0 0 0.5428 1 5063 5063 4.897 1.0207 1 75773000 + 17383 13600 11407 11411 17436 17436 0.010254882808908405 GSALLAPETG 10 Unmodified _GSALLAPETG_ 0 0 0 ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant;CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant ENSG00000008300|ENST00000164024|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.223388671875 2 458.242732 914.470912 0.78379 0.00035917 -0.14744 -6.7562E-05 0.63635 0.0002916 458.2426726925063 27.776 0.49097 25.993 25.699 26.19 -1.7821 17 13 2 0 0 0 0.26497 1 4957 4957 39.95 8.6814 1 738580 17384 1042 11408 11412 17437 17437 0.010254882809022092 GSALLAPETG 10 Unmodified _GSALLAPETG_ 0 0 0 ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant;CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant ENSG00000008300|ENST00000164024|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23785400390625 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 27.846 1 25.85 25.35 26.35 -1.9962 0 0 0 0.19577 1 4673 4673 29.082 5.061 1 17385 1042 11408 11412 17438 17438 0.010254882809022092 GSCCDQQD 8 Unmodified _GSCCDQQD_ 0 0 0 ENST00000600238.1_1_19:17973543-17973672:+|nuORF ENST00000600238.1_1_19:17973543-17973672:+|nuORF ENST00000600238.1_1_19:17973543-17973672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 428.14105224609375 2 428.13401 854.253467 NaN NaN NaN NaN NaN NaN NaN 6.1188 1 5.1099 4.6099 5.6099 -1.0089 0 0 0 0.21486 1 359 359 0.69038 0.28966 1 17386 11700 11409 11413 17439 17439 -0.17948973255658984 GSCCSHCD 8 Unmodified _GSCCSHCD_ 0 0 0 REV__ENSG00000182566|ENST00000328853|CLEC4G REV__ENSG00000182566|ENST00000328853|CLEC4G MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3837280273438 1 811.21677 810.209494 0.69775 0.00056603 -0.76347 -0.00061934 -0.065716 -5.331E-05 811.2174880733186 172.07 0.20624 167.19 167.03 167.24 -4.8809 7 5 2 0 0 0 1.0282 1 34114 34114 0 0 1 14447000 + 17387 18787 11410 11414 17440 17440 -0.20320280953660586 GSCSCDAC 8 Unmodified _GSCSCDAC_ 0 0 0 ENST00000562734.5_1_16:57481439-57485011:+|nuORF ENST00000562734.5_1_16:57481439-57485011:+|nuORF ENST00000562734.5_1_16:57481439-57485011:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 746.1932373046875 1 745.194972 744.187695 -0.43809 -0.00032646 -4.141 -0.0030858 -4.579 -0.0034123 745.1928904604436 5.0854 0.27979 4.0455 3.8972 4.177 -1.04 10 7 2 0 0 0 0.89856 1 204 204 0 0 1 231870 17388 11322 11411 11415 17441 17441 -0.19463085702227545 GSDCRTCRLCF 11 Unmodified _GSDCRTCRLCF_ 0 0 0 REV__TNFRSF10B|p.K181Nfs*17|1|0.22|ENSG00000120889|chr8:23028533-23028536|TTCT/-|frameshift_variant REV__TNFRSF10B|p.K181Nfs*17|1|0.22|ENSG00000120889|chr8:23028533-23028536|TTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.765869140625 2 630.767742 1259.52093 NaN NaN NaN NaN NaN NaN NaN 69.565 1 66.029 65.529 66.529 -3.5362 0 0 0 0.22632 1 13099 13099 3.0723 0 1 + 17389 15636 11412 11416 17442 17442 -0.09844791648743012 GSDEAIKSI 9 Unmodified _GSDEAIKSI_ 0 0 0 nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant nc|ENSG00000257923|P39880-4|CUX1 nc|ENSG00000257923|P39880-4|CUX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23907470703125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 65.785 1 65.785 65.285 66.285 0 0 0 0 0.19512 1 12692 12692 12.241 11.559 1 17390 7948 11413 11417 17443 17443 0.0033318441828669165 GSDEPAFMYY 10 Unmodified _GSDEPAFMYY_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2685546875 2 590.23679 1178.45903 0.34872 0.00020583 0.4951 0.00029223 0.84383 0.00049806 590.2368842023482 139.33 0.79559 139.33 138.98 139.78 0 43 22 2 0 0 0 0.0045396 5 27694 27684;27694;27697;27765;27799 100.37 76.351 1 19564000 17391 5033 11414 11418 17444;17445;17446;17447;17448 17445 -0.12306496524593058 GSDEPAFMYY 10 Unmodified _GSDEPAFMYY_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2503051757812 2 590.23679 1178.45903 0.53662 0.00031674 -0.22449 -0.0001325 0.31213 0.00018423 590.2366182252813 144.9 1.1138 140.23 139.64 140.75 -4.6694 92 31 4 0 0 0 0.00015982 6 28693 28618;28637;28693;28773;28791;28804 125.62 91.964 1 53831000 17392 5033 11414 11418 17449;17450;17451;17452;17453;17454 17451 -0.12306496524593058 GSDEPAFMYY 10 Unmodified _GSDEPAFMYY_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2684936523438 2 590.23679 1178.45903 0.51933 0.00030653 -0.045197 -2.6677E-05 0.47413 0.00027985 590.2367066418271 145.14 1.1055 140.07 139.56 140.66 -5.0671 77 31 3 0 0 0 1.2295E-12 2 28074 28074;28167 63.167 50.939 1 45607000 17393 5033 11414 11418 17455;17456 17455 -0.12306496524593058 GSDEPAFMYY 10 Unmodified _GSDEPAFMYY_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.275390625 2 590.23679 1178.45903 0.31574 0.00018636 0.071677 4.2306E-05 0.38742 0.00022867 590.2368460914279 144.93 1.0711 139.98 139.45 140.52 -4.9445 91 30 5 0 0 0 6.6101E-05 4 28014 28014;28062;28101;28104 133.7 104.62 1 28621000 17394 5033 11414 11418 17457;17458;17459;17460 17457 -0.12306496524593058 GSDFGHSSSY 10 Unmodified _GSDFGHSSSY_ 0 0 0 CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR CON__Q86YZ3 CON__Q86YZ3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.26171875 2 522.206878 1042.3992 NaN NaN NaN NaN NaN NaN NaN 43.251 1 40.645 40.145 41.145 -2.606 0 0 0 0.22576 1 7802 7802 14.838 1.2234 1 + 17395 703 11415 11419 17461 17461 -0.12030051143574383 GSDIELHHA 9 Unmodified _GSDIELHHA_ 0 0 0 REV__ENSG00000204610|ENST00000376694|TRIM15 REV__ENSG00000204610|ENST00000376694|TRIM15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2624206542969 2 489.735606 977.456658 0.24672 0.00012083 -1.9773 -0.00096837 -1.7306 -0.00084754 489.73499021213723 35.794 1.0028 33.542 33.266 34.269 -2.2527 60 28 4 0 0 0 0.71527 1 6347 6347 13.906 0 1 4762000 + 17396 19552 11416 11420 17462 17462 -0.03297164147386411 GSDKIQPES 9 Unmodified _GSDKIQPES_ 0 0 0 REV__RIMS2|p.G481Efs*3|1|0.44|ENSG00000176406|chr8:103915551-103915551|A/-|frameshift_variant REV__RIMS2|p.G481Efs*3|1|0.44|ENSG00000176406|chr8:103915551-103915551|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2423400878906 2 480.735271 959.45599 -0.10865 -5.223E-05 0.31727 0.00015252 0.20862 0.00010029 480.7353767990116 52.294 0.93935 49.199 48.716 49.656 -3.0954 71 26 4 0 0 0 0.54933 1 9580 9580 22.736 6.8891 1 11542000 + 17397 18507 11417 11421 17463 17463 -0.02536003587090363 GSDKLAGNTV 10 Unmodified _GSDKLAGNTV_ 0 0 0 REV__ENST00000591808.5_1_18:56532156-56532252:+|nuORF REV__ENST00000591808.5_1_18:56532156-56532252:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2402038574219 2 481.251089 960.487624 0.021637 1.0413E-05 -1.1165 -0.00053734 -1.0949 -0.00052693 481.2503997935835 40.302 3.026 37.762 36.657 39.683 -2.5398 141 85 2 0 0 0 0.25854 2 7417 7417;7422 19.362 11.774 1 101380000 + 17398 23345 11418 11422 17464;17465 17464 0.005799891668630153 GSDPEFARY 9 Unmodified _GSDPEFARY_ 0 0 0 ENSG00000166398|ENST00000299505|GARRE1 ENSG00000166398|ENST00000299505|GARRE1 ENSG00000166398|ENST00000299505|GARRE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2681884765625 2 521.235439 1040.45632 0.30336 0.00015812 -0.44371 -0.00023128 -0.14036 -7.3158E-05 521.2353354402887 63.483 0.72573 60.227 59.88 60.606 -3.2567 40 20 3 0 0 0 0.72108 1 11894 11894 5.2969 0.54088 1 2514900 17399 5718 11419 11423 17466 17466 -0.062285838672323734 GSDPYVRMY 9 Unmodified _GSDPYVRMY_ 0 0 0 nc|ENSG00000117868|A0FGR8-5|ESYT2;ENST00000435514.3_1_7:158526900-158536411:-|nuORF;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-5|ESYT2 nc|ENSG00000117868|A0FGR8-5|ESYT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7809448242188 2 544.247492 1086.48043 0.067283 3.6619E-05 0.20868 0.00011357 0.27597 0.00015019 544.2475136496457 81.986 0.67813 78.146 77.856 78.534 -3.8395 26 19 2 0 0 0 0.30909 1 15555 15555 34.932 26.187 1 2627700 17400 3006 11420 11424 17467 17467 -0.05935066705205827 GSDPYVRMY 9 Unmodified _GSDPYVRMY_ 0 0 0 nc|ENSG00000117868|A0FGR8-5|ESYT2;ENST00000435514.3_1_7:158526900-158536411:-|nuORF;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-5|ESYT2 nc|ENSG00000117868|A0FGR8-5|ESYT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77587890625 2 544.247492 1086.48043 -0.078165 -4.2541E-05 0.005497 2.9918E-06 -0.072668 -3.9549E-05 544.2475563301042 81.867 0.56268 78.179 77.831 78.394 -3.6879 25 15 2 0 0 0 0.8372 1 15620 15620 13.042 10.983 1 3111400 17401 3006 11420 11424 17468 17468 -0.05935066705205827 GSDPYVRMY 9 Unmodified _GSDPYVRMY_ 0 0 0 nc|ENSG00000117868|A0FGR8-5|ESYT2;ENST00000435514.3_1_7:158526900-158536411:-|nuORF;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-5|ESYT2 nc|ENSG00000117868|A0FGR8-5|ESYT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 544.247492 1086.48043 0.22249 0.00012109 -0.63377 -0.00034493 -0.41128 -0.00022384 544.247145181019 81.882 0.58701 78.325 77.995 78.582 -3.557 0.10843 -0.0004825 NaN 34.932 29 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3011800 17402 3006 11420 11424 -0.05935066705205827 GSDQNASLY 9 Unmodified _GSDQNASLY_ 0 0 0 nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 477.7415771484375 2 477.711796 953.40904 0.097462 4.6559E-05 0.37479 0.00017904 0.47225 0.0002256 477.71189155281246 41.213 1.4045 41.213 40.778 42.183 0 70 39 2 0 0 0 0.25976 1 7726 7726 19.626 16.983 1 2880600 17403 3319 11421 11425 17469 17469 -0.06952863138224075 GSDQNASLY 9 Unmodified _GSDQNASLY_ 0 0 0 nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.711796 953.40904 -0.066968 -3.1991E-05 0.56753 0.00027112 0.50057 0.00023913 477.7120487624052 43.893 1.5743 41.103 40.449 42.024 -2.79 -0.02802 2.1445E-05 NaN 19.626 87 44 3 NaN NaN NaN NaN 0 NaN NaN 0 3708500 17404 3319 11421 11425 -0.06952863138224075 GSDQNASLY 9 Unmodified _GSDQNASLY_ 0 0 0 nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.711796 953.40904 -0.053816 -2.5709E-05 0.63199 0.00030191 0.57818 0.0002762 477.71205639878025 43.804 1.5092 41.038 40.502 42.012 -2.7661 -0.093048 8.3033E-05 NaN 19.626 84 42 3 NaN NaN NaN NaN 0 NaN NaN 0 3136700 17405 3319 11421 11425 -0.06952863138224075 GSDQNASLY 9 Unmodified _GSDQNASLY_ 0 0 0 nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.711796 953.40904 -0.051239 -2.4477E-05 0.59454 0.00028402 0.5433 0.00025954 477.71205893631696 43.917 1.5082 41.17 40.521 42.029 -2.7475 0.03892 4.7248E-05 NaN 19.626 74 42 3 NaN NaN NaN NaN 0 NaN NaN 0 2134000 17406 3319 11421 11425 -0.06952863138224075 GSDQPSSILG 10 Unmodified _GSDQPSSILG_ 0 0 0 ENST00000173527.5_1_5:128440697-128440899:+|nuORF ENST00000173527.5_1_5:128440697-128440899:+|nuORF ENST00000173527.5_1_5:128440697-128440899:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23712158203125 2 480.735271 959.45599 0.2394 0.00011509 -0.11919 -5.7299E-05 0.12021 5.779E-05 480.73517754774167 49.194 0.88139 49.194 48.703 49.584 0 56 24 3 0 0 0 0.38769 1 9271 9271 43.772 13.548 1 10694000 17407 8078 11422 11426 17470 17470 -0.025360035870676256 GSDRGRWLV 9 Unmodified _GSDRGRWLV_ 0 0 0 REV__ENSG00000174339|ENST00000307832|OR2Y1 REV__ENSG00000174339|ENST00000307832|OR2Y1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7011108398438 2 523.280515 1044.54648 -0.55106 -0.00028836 1.1703 0.00061242 0.61929 0.00032406 523.7819491880576 51.449 0.13703 48.403 48.333 48.47 -3.0453 5 3 2 0 0 0 0.58804 1 9450 9450 13.906 3.0821 1 335280 + 17408 18407 11423 11427 17471 17471 0.025985102518461645 GSDRSSFSHY 10 Unmodified _GSDRSSFSHY_ 0 0 0 ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 ENST00000510079.2_1_4:79102321-79102666:-|nuORF ENST00000510079.2_1_4:79102321-79102666:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.219970703125 3 381.500227 1141.47885 -0.06553 -2.5E-05 0.76522 0.00029193 0.69969 0.00026693 381.5005054051454 26.016 0.96314 26.016 25.774 26.737 0 85 27 5 0 0 0 0.12351 2 4519 4513;4519 53.798 21.182 1 85128000 17409 4445 11424 11428 17472;17473 17473 -0.08622984469593575 GSDRSSFSHY 10 Unmodified _GSDRSSFSHY_ 0 0 0 ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 ENST00000510079.2_1_4:79102321-79102666:-|nuORF ENST00000510079.2_1_4:79102321-79102666:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.22015380859375 3 381.500227 1141.47885 0.62609 0.00023886 0.17029 6.4966E-05 0.79638 0.00030382 381.500293191112 27.954 1.177 25.998 25.701 26.878 -1.9561 98 33 5 0 0 0 0.074529 1 4959 4959 72.276 38.455 1 78203000 17410 4445 11424 11428 17474 17474 -0.08622984469593575 GSDRSSFSHY 10 Unmodified _GSDRSSFSHY_ 0 0 0 ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 ENST00000510079.2_1_4:79102321-79102666:-|nuORF ENST00000510079.2_1_4:79102321-79102666:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2108154296875 3 381.500227 1141.47885 -0.41899 -0.00015984 1.2041 0.00045937 0.78514 0.00029953 381.5006930831023 27.952 1.1473 25.956 25.682 26.829 -1.9962 88 32 4 0 0 0 0.078906 1 4700 4700 68.484 32.089 1 68198000 17411 4445 11424 11428 17475 17475 -0.08622984469593575 GSDSRFAGY 9 Unmodified _GSDSRFAGY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant;nc|ENSG00000115524|O75533-2|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2402648925781 2 480.214506 958.414459 0.015574 7.4789E-06 0.11052 5.3073E-05 0.12609 6.0552E-05 480.21455952518977 47.124 0.44215 44.182 43.934 44.376 -2.9421 26 12 3 0 0 0 0.33094 1 8565 8565 29.841 16.333 1 5147200 17412 2862 11425 11429 17476 17476 -0.06641139555756581 GSDSRFAGY 9 Unmodified _GSDSRFAGY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant;nc|ENSG00000115524|O75533-2|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.214506 958.414459 0.23993 0.00011522 -0.10137 -4.8679E-05 0.13856 6.6537E-05 480.21443800080544 44.059 0.4418 44.059 43.78 44.222 0 -0.10682 -0.00012585 NaN 29.841 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 5180100 17413 2862 11425 11429 -0.06641139555756581 GSDSRFAGY 9 Unmodified _GSDSRFAGY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant;nc|ENSG00000115524|O75533-2|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.214506 958.414459 -0.022269 -1.0694E-05 0.05926 2.8457E-05 0.03699 1.7763E-05 480.2145237674369 47.104 0.48296 44.263 44.006 44.489 -2.8409 0.096394 2.8427E-05 NaN 29.841 31 13 3 NaN NaN NaN NaN 0 NaN NaN 0 6839400 17414 2862 11425 11429 -0.06641139555756581 GSDSRFAGY 9 Unmodified _GSDSRFAGY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant;nc|ENSG00000115524|O75533-2|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.214506 958.414459 -0.13486 -6.4763E-05 0.048542 2.331E-05 -0.086321 -4.1453E-05 480.2145605784278 47.111 0.38148 44.161 43.948 44.33 -2.9499 -0.0053133 1.8133E-05 NaN 29.841 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3026200 17415 2862 11425 11429 -0.06641139555756581 GSDSSPGNYY 10 Unmodified _GSDSSPGNYY_ 0 0 0 REV__ENST00000561302.5_1_15:76430142-76521275:+|nuORF REV__ENST00000561302.5_1_15:76430142-76521275:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6937255859375 2 523.706711 1045.39887 NaN NaN NaN NaN NaN NaN NaN 82.305 1 78.431 77.931 78.931 -3.8736 0 0 0 2.8426 1 15637 15637 3.5927 0 1 + 17416 18118 11426 11430 17477 17477 -0.12201470863465147 GSDWYWTE 8 Unmodified _GSDWYWTE_ 0 0 0 REV__nc|ENSG00000115318|P58215-2|LOXL3 REV__nc|ENSG00000115318|P58215-2|LOXL3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2747802734375 2 522.208889 1042.40323 -0.76777 -0.00040093 -0.30699 -0.00016031 -1.0748 -0.00056125 522.208550248635 43.307 0.47493 40.541 40.392 40.867 -2.7661 18 12 2 0 0 0 0.93477 1 7818 7818 18.135 5.0925 1 1504600 + 17417 15423 11427 11431 17478 17478 -0.11627961649878671 GSEGCCYC 8 Unmodified _GSEGCCYC_ 0 0 0 REV__ENSG00000187969|ENST00000339534|ZCCHC13 REV__ENSG00000187969|ENST00000339534|ZCCHC13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.1284484863281 2 411.116774 820.218996 NaN NaN NaN NaN NaN NaN NaN 12.724 1 11.594 11.094 12.094 -1.1293 0 0 0 0.21486 1 1586 1586 0 0 1 + 17418 19123 11428 11432 17479 17479 -0.1983051266812481 GSEGCCYC 8 Unmodified _GSEGCCYC_ 0 0 0 REV__ENSG00000187969|ENST00000339534|ZCCHC13 REV__ENSG00000187969|ENST00000339534|ZCCHC13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.114990234375 2 411.116774 820.218996 NaN NaN NaN NaN NaN NaN NaN 132.95 1 128.15 127.65 128.65 -4.799 0 0 0 0.21486 1 25589 25589 0 0 1 + 17419 19123 11428 11432 17480 17480 -0.1983051266812481 GSEIELLSA 9 Unmodified _GSEIELLSA_ 0 0 0 REV__tr|U7T4V1|U7T4V1_FUSNUCPA1familymonovalentcation:H+antiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00189PE=4SV=1 REV__tr|U7T4V1|U7T4V1_FUSNUCPA1familymonovalentcation:H+antiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00189PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2440490722656 2 459.742565 917.470577 0.40568 0.00018651 -0.24368 -0.00011203 0.162 7.4478E-05 459.74239806167276 118.35 1.0428 113.74 113.21 114.25 -4.6106 70 28 3 0 0 0 0.0523 1 22720 22720 8.9129 0 1 22694000 + 17420 25396 11429 11433 17481 17481 0.008540685610455512 GSEIELLSA 9 Unmodified _GSEIELLSA_ 0 0 0 REV__tr|U7T4V1|U7T4V1_FUSNUCPA1familymonovalentcation:H+antiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00189PE=4SV=1 REV__tr|U7T4V1|U7T4V1_FUSNUCPA1familymonovalentcation:H+antiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00189PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2442321777344 2 459.742565 917.470577 0.43051 0.00019792 -0.16776 -7.7127E-05 0.26274 0.00012079 459.7424273940338 118.14 0.96581 113.73 113.24 114.21 -4.4088 79 26 4 0 0 0 0.0523 1 22749 22749 8.9129 0 1 24466000 + 17421 25396 11429 11433 17482 17482 0.008540685610455512 GSEPASLSY 9 Unmodified _GSEPASLSY_ 0 0 0 ENST00000540557.1_1_9:37727926-37784024:-|nuORF;ENST00000465860.5_1_9:37781981-37784738:-|nuORF;nc|ENSG00000107371|Q9NQT5-2|EXOSC3;ENSG00000107371|ENST00000327304|EXOSC3 ENST00000540557.1_1_9:37727926-37784024:-|nuORF ENST00000540557.1_1_9:37727926-37784024:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 910.4154663085938 1 910.415253 909.407977 0.20751 0.00018892 0.27985 0.00025478 0.48736 0.0004437 910.4155053284849 63.234 0.80328 63.234 62.839 63.642 0 38 22 2 0 0 0 0.00035515 4 12144 12094;12097;12144;12145 96.285 17.191 1 2953000 17422 2422 11430 11434 17483;17484;17485;17486 17485 -0.05035077507125152 GSEPASLSY 9 Unmodified _GSEPASLSY_ 0 0 0 ENST00000540557.1_1_9:37727926-37784024:-|nuORF;ENST00000465860.5_1_9:37781981-37784738:-|nuORF;nc|ENSG00000107371|Q9NQT5-2|EXOSC3;ENSG00000107371|ENST00000327304|EXOSC3 ENST00000540557.1_1_9:37727926-37784024:-|nuORF ENST00000540557.1_1_9:37727926-37784024:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.4152221679688 1 910.415253 909.407977 0.18324 0.00016683 -0.060771 -5.5327E-05 0.12247 0.0001115 910.4153900022358 66.54 0.93941 63.431 62.887 63.826 -3.1086 48 26 2 0 0 0 0.023387 4 12905 12802;12853;12905;12957 88.904 24.667 1 4633800 17423 2422 11430 11434 17487;17488;17489;17490 17489 -0.05035077507125152 GSEPASLSY 9 Unmodified _GSEPASLSY_ 0 0 0 ENST00000540557.1_1_9:37727926-37784024:-|nuORF;ENST00000465860.5_1_9:37781981-37784738:-|nuORF;nc|ENSG00000107371|Q9NQT5-2|EXOSC3;ENSG00000107371|ENST00000327304|EXOSC3 ENST00000540557.1_1_9:37727926-37784024:-|nuORF ENST00000540557.1_1_9:37727926-37784024:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 910.4156494140625 1 910.415253 909.407977 0.51388 0.00046784 -0.31705 -0.00028864 0.19683 0.0001792 910.41511463776 66.971 0.95216 63.475 62.903 63.856 -3.4965 47 26 2 0 0 0 0.011913 2 12529 12484;12529 100.37 18.758 1 4022900 17424 2422 11430 11434 17491;17492 17492 -0.05035077507125152 GSEPASLSY 9 Unmodified _GSEPASLSY_ 0 0 0 ENST00000540557.1_1_9:37727926-37784024:-|nuORF;ENST00000465860.5_1_9:37781981-37784738:-|nuORF;nc|ENSG00000107371|Q9NQT5-2|EXOSC3;ENSG00000107371|ENST00000327304|EXOSC3 ENST00000540557.1_1_9:37727926-37784024:-|nuORF ENST00000540557.1_1_9:37727926-37784024:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.416259765625 1 910.415253 909.407977 0.4607 0.00041942 -0.088291 -8.0382E-05 0.3724 0.00033904 910.4153614717645 66.628 0.98192 63.301 62.884 63.866 -3.3268 50 27 2 0 0 0 0.01604 3 12480 12480;12525;12621 96.285 18.135 1 4009100 17425 2422 11430 11434 17493;17494;17495 17493 -0.05035077507125152 GSERIYSKF 9 Unmodified _GSERIYSKF_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7825317382812 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 24.48 1 22.946 22.446 23.446 -1.5342 0 0 0 0.19687 1 3987 3987 0.40827 0.15679 1 + 17426 19304 11431 11435 17496 17496 0.011205549548776617 GSERLFQSY 9 Unmodified _GSERLFQSY_ 0 0 0 REV__ENST00000588984.5_1_19:3751026-3754498:-|nuORF REV__ENST00000588984.5_1_19:3751026-3754498:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7701416015625 2 543.764363 1085.51417 NaN NaN NaN NaN NaN NaN NaN 86.542 1 82.592 82.092 83.092 -3.9503 0 0 0 0.20294 1 16476 16476 22.736 1.1993 1 + 17427 13928 11432 11436 17497 17497 -0.025163219418118388 GSGCGKGG 8 Unmodified _GSGCGKGG_ 0 0 0 REV__nc|ENSG00000130731|Q96S19-2|METTL26 REV__nc|ENSG00000130731|Q96S19-2|METTL26 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76611328125 1 622.261336 621.254059 0.52807 0.0003286 -1.7023 -0.0010593 -1.1742 -0.00073068 622.2611602774041 68.411 0.16892 65.021 64.912 65.081 -3.3903 6 4 2 0 0 0 1.028 1 12904 12904 0.69038 0 1 501520 + 17428 21784 11433 11437 17498 17498 -0.07171765753639647 GSGDAAAA 8 Unmodified _GSGDAAAA_ 0 0 0 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.163330078125 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 149.08 1 144.37 143.87 144.87 -4.7095 0 0 0 0.2396 1 29606 29606 0 0 1 17429 3574 11434 11438 17499 17499 -0.06348129601440178 GSGDAAAA 8 Unmodified _GSGDAAAA_ 0 0 0 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1630554199219 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 149.33 1 144.59 144.09 145.09 -4.7323 0 0 0 0.2396 1 29657 29657 0 0 1 17430 3574 11434 11438 17500 17500 -0.06348129601440178 GSGGEDEDDPD 11 Unmodified _GSGGEDEDDPD_ 0 0 0 SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant;nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1 SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 546.8320922851562 2 546.68363 1091.35271 NaN NaN NaN NaN NaN NaN NaN 148.73 1 143.67 143.17 144.17 -5.0595 0 0 0 0.22632 1 28812 28812 0.026206 0.017929 1 17431 5485 11435 11439 17501 17501 -0.18931580556204608 GSGLRPEAE 9 Unmodified _GSGLRPEAE_ 0 0 0 REV__NAT16|p.S42L|1|0.27|ENSG00000167011|chr7:101174683-101174683|G/A|missense_variant REV__NAT16|p.S42L|1|0.27|ENSG00000167011|chr7:101174683-101174683|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2301940917969 2 458.230156 914.445759 0.47873 0.00021937 -0.32433 -0.00014862 0.1544 7.0749E-05 458.22999017772673 29.743 0.49048 27.626 27.386 27.877 -2.1167 32 13 3 0 0 0 0.27705 1 5345 5345 4.7159 1.1289 1 7166100 + 17432 23918 11436 11440 17502 17502 -0.014885665216752386 GSGPPGAH 8 Unmodified _GSGPPGAH_ 0 0 0 REV__ENSG00000143368|ENST00000271628|SF3B4 REV__ENSG00000143368|ENST00000271628|SF3B4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 340.4681701660156 2 340.161545 678.308538 -0.62611 -0.00021298 0.23976 8.1557E-05 -0.38635 -0.00013142 340.1614591682384 38.08 0.27266 35.611 35.438 35.711 -2.4688 10 7 2 0 0 0 0.88997 1 7043 7043 1.7423 1.1154 1 605130 + 17433 16719 11437 11441 17503 17503 -0.04348430610571086 GSGSAVARQP 10 Unmodified _GSGSAVARQP_ 0 0 0 REV__ENST00000532574.5_1_1:145811866-145826998:-|nuORF REV__ENST00000532574.5_1_1:145811866-145826998:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24127197265625 2 465.243598 928.472643 NaN NaN NaN NaN NaN NaN NaN 59.775 1 59.775 59.275 60.275 0 0 0 0 2.8426 1 11455 11455 0.26539 0 1 + 17434 22140 11438 11442 17504 17504 0.0055454208951459805 GSILPHKPG 9 Unmodified _GSILPHKPG_ 0 0 0 ENST00000580461.5_1_17:7476163-7478717:+|nuORF ENST00000580461.5_1_17:7476163-7478717:+|nuORF ENST00000580461.5_1_17:7476163-7478717:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.2650146484375 2 453.263802 904.513051 NaN NaN NaN NaN NaN NaN NaN 42.428 1 39.777 39.277 40.277 -2.651 0 0 0 0.19451 1 7639 7639 4.7159 2.9736 1 17435 11495 11439 11443 17505 17505 0.05697508479943281 GSKMDEVIY 9 Unmodified _GSKMDEVIY_ 0 0 0 tr|U7SIX5|U7SIX5_FUSNUTranscriptionterminationfactorRhoOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rhoPE=3SV=1 tr|U7SIX5|U7SIX5_FUSNUTranscriptionterminationfactorRhoOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rhoPE=3SV=1 tr|U7SIX5|U7SIX5_FUSNUTranscriptionterminationfactorRhoOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rhoPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2579345703125 2 521.2497 1040.48485 -0.76967 -0.00040119 0.73987 0.00038566 -0.029797 -1.5532E-05 521.2499877462325 42.702 0.93446 40.051 39.572 40.507 -2.651 57 26 3 0 0 0 0.62102 1 7648 7648 11.64 3.7301 1 10190000 17436 25928 11440 11444 17506 17506 -0.033776022823076346 GSKPRGLH 8 Unmodified _GSKPRGLH_ 0 0 0 ENST00000215582.7_1_19:751151-756959:+|nuORF ENST00000215582.7_1_19:751151-756959:+|nuORF ENST00000215582.7_1_19:751151-756959:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 426.248291015625 2 426.245944 850.477334 NaN NaN NaN NaN NaN NaN NaN 45.281 1 45.281 44.781 45.781 0 0 0 0 0.23312 1 8509 8509 6.2058 0 1 17437 8098 11441 11445 17507 17507 0.046114710229517186 GSKSSVIGCKI 11 Unmodified _GSKSSVIGCKI_ 0 0 0 ENST00000420283.2_1_6:116573500-116573923:-|nuORF ENST00000420283.2_1_6:116573500-116573923:-|nuORF ENST00000420283.2_1_6:116573500-116573923:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 3 360.202353 1077.58523 NaN NaN NaN NaN NaN NaN NaN 75.33 1 71.607 71.107 72.107 -3.7227 0 0 0 0.23057 1 14247 14247 7.846 1.6542 1 17438 9658 11442 11446 17508 17508 0.049540547713377237 GSKSSVIGCKI 11 Unmodified _GSKSSVIGCKI_ 0 0 0 ENST00000420283.2_1_6:116573500-116573923:-|nuORF ENST00000420283.2_1_6:116573500-116573923:-|nuORF ENST00000420283.2_1_6:116573500-116573923:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20172119140625 3 360.202353 1077.58523 NaN NaN NaN NaN NaN NaN NaN 75.459 1 71.826 71.326 72.326 -3.6337 0 0 0 0.23307 1 14342 14342 5.8681 0.13629 1 17439 9658 11442 11446 17509 17509 0.049540547713377237 GSLAPPPPPP 10 Unmodified _GSLAPPPPPP_ 0 0 0 REV__ENSG00000139800|ENST00000267294|ZIC5 REV__ENSG00000139800|ENST00000267294|ZIC5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2579345703125 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 24.188 1 22.635 22.135 23.135 -1.5532 0 0 0 0.22535 1 4203 4203 20.454 1.1966 1 + 17440 16544 11443 11447 17510 17510 0.034706863857991266 GSLATEGLGL 10 Unmodified _GSLATEGLGL_ 0 0 0 REV__nc|ENSG00000214655|A7E2V4-2|ZSWIM8 REV__nc|ENSG00000214655|A7E2V4-2|ZSWIM8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22674560546875 2 459.250557 916.486562 0.21808 0.00010015 0.56194 0.00025807 0.78001 0.00035822 459.25045006294243 31.423 0.38697 29.193 29.059 29.446 -2.2305 12 10 2 0 0 0 0.71097 1 5706 5706 10.074 0.6908 1 377740 + 17441 24267 11444 11448 17511 17511 0.024977747979505693 GSLFRHQA 8 Unmodified _GSLFRHQA_ 0 0 0 REV__ENST00000225603.8_2_17:46178630-46178726:-|nuORF REV__ENST00000225603.8_2_17:46178630-46178726:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2259216308594 2 458.243401 914.472249 0.28314 0.00012975 -1.1911 -0.00054579 -0.90792 -0.00041605 458.24283143633727 30.194 1.8549 28.301 27.651 29.506 -1.8928 165 52 5 0 0 0 0.49114 1 5251 5251 28.487 8.0332 1 75773000 + 17442 20044 11445 11449 17512 17512 0.011591671603241593 GSLILFSSLSQ 11 Unmodified _GSLILFSSLSQ_ 0 0 0 REV__ENST00000343060.4_1_7:27133701-27134016:-|nuORF REV__ENST00000343060.4_1_7:27133701-27134016:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3115844726562 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 142.86 1 142.86 142.36 143.36 0 0 0 0 0.22595 1 28493 28493 11.495 3.3392 1 + 17443 20731 11446 11450 17513 17513 0.05410263957674033 GSLKKEWFLQR 11 Unmodified _GSLKKEWFLQR_ 0 0 0 REV__nc|ENSG00000071655|O95983-2|MBD3 REV__nc|ENSG00000071655|O95983-2|MBD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2553405761719 3 464.597983 1390.77212 0.049558 2.3025E-05 -0.61267 -0.00028464 -0.56311 -0.00026162 465.26834488284965 60.543 0.94696 57.229 56.87 57.817 -3.3139 54 26 3 0 0 0 0.79645 1 11381 11381 4.1166 0.27072 1 1964700 + 17444 14274 11447 11451 17514 17514 0.09236414651218183 GSLLAGAPAGT 11 Unmodified _GSLLAGAPAGT_ 0 0 0 REV__FAM181B|p.L337*|1|0.51|ENSG00000182103|chr11:82732721-82732721|G/-|frameshift_variant REV__FAM181B|p.L337*|1|0.51|ENSG00000182103|chr11:82732721-82732721|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2314147949219 2 457.750724 913.486896 0.061808 2.8293E-05 0.55368 0.00025345 0.61549 0.00028174 457.7508850634773 26.007 0.82844 24.372 23.788 24.616 -1.6347 48 23 3 0 0 0 0.19954 1 4295 4295 29.023 0 1 3130000 + 17445 18754 11448 11452 17515 17515 0.026691945178072274 GSLWLVSVKY 10 Unmodified _GSLWLVSVKY_ 0 0 0 ENST00000298299.3_1_10:45499453-45499507:+|nuORF ENST00000298299.3_1_10:45499453-45499507:+|nuORF ENST00000298299.3_1_10:45499453-45499507:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3291015625 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 168.09 1 163.14 162.64 163.64 -4.948 0 0 0 0.22583 1 33119 33119 13.906 0.86358 1 17446 8526 11449 11453 17516 17516 0.06935175545504535 GSNRDVWKY 9 Unmodified _GSNRDVWKY_ 0 0 0 REV__ENSG00000226887|ENST00000443173|ERVMER34-1 REV__ENSG00000226887|ENST00000443173|ERVMER34-1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2120666503906 3 375.520962 1123.54106 -0.59079 -0.00022185 -0.17087 -6.4166E-05 -0.76166 -0.00028602 375.5208798813576 37.945 0.52479 35.476 35.151 35.676 -2.4688 28 14 3 0 0 0 0.87497 1 7004 7004 4.897 2.6142 1 1337900 + 17447 19729 11450 11454 17517 17517 -0.01577213330642735 GSNRDVWKY 9 Unmodified _GSNRDVWKY_ 0 0 0 REV__ENSG00000226887|ENST00000443173|ERVMER34-1 REV__ENSG00000226887|ENST00000443173|ERVMER34-1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.520962 1123.54106 0.078926 2.9638E-05 -0.99523 -0.00037373 -0.91631 -0.00034409 375.5206135796684 37.824 0.48373 35.476 35.167 35.651 -2.3479 0.032613 -0.00061961 NaN 4.897 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1694700 + 17448 19729 11450 11454 -0.01577213330642735 GSNRDVWKY 9 Unmodified _GSNRDVWKY_ 0 0 0 REV__ENSG00000226887|ENST00000443173|ERVMER34-1 REV__ENSG00000226887|ENST00000443173|ERVMER34-1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 375.520962 1123.54106 -0.47155 -0.00017708 -0.31037 -0.00011655 -0.78193 -0.00029363 375.5207862378548 37.763 0.48291 35.426 35.153 35.636 -2.3375 -0.017437 0.00015193 NaN 4.897 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1692800 + 17449 19729 11450 11454 -0.01577213330642735 GSPELCAWHRR 11 Unmodified _GSPELCAWHRR_ 0 0 0 ENST00000354992.6_1_22:34316098-34316365:-|nuORF ENST00000354992.6_1_22:34316098-34316365:-|nuORF ENST00000354992.6_1_22:34316098-34316365:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.88287353515625 3 437.884017 1310.63022 NaN NaN NaN NaN NaN NaN NaN 5.7862 1 5.7862 5.2862 6.2862 0 0 0 0 0.23698 1 354 354 0.094841 0 1 17450 8949 11451 11455 17518 17518 -0.012667016427712952 GSPRGRVTS 9 Unmodified _GSPRGRVTS_ 0 0 0 ENST00000361544.10_1_1:100818152-100818506:+|nuORF ENST00000361544.10_1_1:100818152-100818506:+|nuORF ENST00000361544.10_1_1:100818152-100818506:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 306.1697692871094 3 306.170152 915.488627 NaN NaN NaN NaN NaN NaN NaN 123.6 1 119.03 118.53 119.53 -4.5757 0 0 0 0.23508 1 24366 24366 2.4985 0 1 17451 9026 11452 11456 17519 17519 0.027502483264129296 GSPWRLCP 8 Unmodified _GSPWRLCP_ 0 0 0 REV__ENST00000263275.4_2_19:46056483-46056753:-|nuORF REV__ENST00000263275.4_2_19:46056483-46056753:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.230224609375 2 458.228905 914.443257 NaN NaN NaN NaN NaN NaN NaN 21.314 1 21.314 20.814 21.814 0 0 0 0 0.23312 1 3562 3562 6.2058 5.7975 1 + 17452 20209 11453 11457 17520 17520 -0.01738693460322338 GSRAPSLS 8 Unmodified _GSRAPSLS_ 0 0 0 ENST00000574735.1_1_17:5012529-5015337:-|nuORF ENST00000574735.1_1_17:5012529-5015337:-|nuORF ENST00000574735.1_1_17:5012529-5015337:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7217102050781 2 387.70886 773.403166 0.11946 4.6318E-05 -0.026389 -1.0231E-05 0.093076 3.6086E-05 387.70877536590655 26.13 0.45482 24.495 24.23 24.685 -1.6347 18 12 2 0 0 0 8448 1 4298 4298 6.2058 4.4635 1 388470 17453 11445 11454 11458 17521 17521 0.007400831407494479 GSRQWQSI 8 Unmodified _GSRQWQSI_ 0 0 0 REV__ENST00000311128.9_1_3:57613829-57613901:-|nuORF REV__ENST00000311128.9_1_3:57613829-57613901:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2454833984375 2 481.246141 960.477728 NaN NaN NaN NaN NaN NaN NaN 101.19 1 96.896 96.396 97.396 -4.297 0 0 0 0.22674 1 19363 19363 14.838 1.2234 1 + 17454 20489 11455 11459 17522 17522 -0.0040915404786119325 GSRVELPSIS 10 Unmodified _GSRVELPSIS_ 0 0 0 REV__ENST00000376387.4_1_13:100199340-100201457:+|nuORF REV__ENST00000376387.4_1_13:100199340-100201457:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2673950195312 2 522.787838 1043.56112 -0.34563 -0.00018069 0.46418 0.00024267 0.11854 6.1972E-05 522.7883533119156 50.608 0.46425 47.727 47.5 47.964 -2.8811 32 12 3 0 0 0 1.0995 1 9613 9613 0.84494 0.71713 1 1983400 + 17455 21076 11456 11460 17523 17523 0.04108537609340601 GSSGGTIL 8 Unmodified _GSSGGTIL_ 0 0 0 REV__ENST00000552666.1_1_14:36235117-36235897:+|nuORF REV__ENST00000552666.1_1_14:36235117-36235897:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 346.1860046386719 2 346.184686 690.354819 NaN NaN NaN NaN NaN NaN NaN 86.752 1 82.802 82.302 83.302 -3.9503 0 0 0 0.21486 1 16516 16516 2.3027 1.5091 1 + 17456 16000 11457 11461 17524 17524 -0.0027441049913932147 GSSKHTVAE 9 Unmodified _GSSKHTVAE_ 0 0 0 nc|ENSG00000134940|P26436-2|ACRV1;ENSG00000134940|ENST00000533904|ACRV1 nc|ENSG00000134940|P26436-2|ACRV1 nc|ENSG00000134940|P26436-2|ACRV1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2307434082031 2 458.230156 914.445759 0.51651 0.00023668 -0.33757 -0.00015469 0.17894 8.1996E-05 458.2299994951408 29.757 0.48799 27.683 27.413 27.901 -2.0743 33 13 4 0 0 0 0.5428 1 5034 5034 4.897 0 1 4395500 17457 3886 11458 11462 17525 17525 -0.014885665216752386 GSSKVFQVLN 10 Unmodified _GSSKVFQVLN_ 0 0 0 ENSG00000112742|ENST00000369798|TTK;nc|ENSG00000112742|P33981-2|TTK ENSG00000112742|ENST00000369798|TTK ENSG00000112742|ENST00000369798|TTK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 128.32 1 128.32 127.82 128.82 0 0 0 0 0.22588 1 25342 25342 0.62683 0 1 17458 2709 11459 11463 17526 17526 0.0461712798901317 GSSSHLELV 9 Unmodified _GSSSHLELV_ 0 0 0 ENST00000479606.5_1_22:21351789-21352173:+|nuORF ENST00000479606.5_1_22:21351789-21352173:+|nuORF ENST00000479606.5_1_22:21351789-21352173:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24169921875 2 464.740357 927.46616 1.0789 0.0005014 -0.29857 -0.00013876 0.78032 0.00036265 464.74014173020873 26.112 0.44369 24.33 24.039 24.483 -1.7821 21 12 2 0 0 0 0.45972 1 4622 4622 8.1555 0 1 783060 17459 10345 11460 11464 17527 17527 -0.0004739586187270106 GSTVHVLRK 9 Unmodified _GSTVHVLRK_ 0 0 0 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 498.77838134765625 2 498.801083 995.587613 NaN NaN NaN NaN NaN NaN NaN 8.5363 1 7.742 7.242 8.242 -0.79424 0 0 0 0.23508 1 896 896 0 0 1 17460 4189 11461 11465 17528 17528 0.0896427129133599 GSVIAGATIAP 11 Unmodified _GSVIAGATIAP_ 0 0 0 REV__tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1 REV__tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7372131347656 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 52.832 1 49.948 49.448 50.448 -2.8837 0 0 0 0.22632 1 10059 10059 8.4443 8.3165 1 + 17461 25001 11462 11466 17529 17529 0.0543005406894963 GSVIGGFL 8 Unmodified _GSVIGGFL_ 0 0 0 ENSG00000173214|ENST00000671876|MFSD4B ENSG00000173214|ENST00000671876|MFSD4B ENSG00000173214|ENST00000671876|MFSD4B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2118835449219 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 59.072 1 59.072 58.572 59.572 0 0 0 0 0.23749 1 11314 11314 0.0082765 0 1 17462 6277 11463 11467 17530 17530 0.027670567772247523 GSVQAAKT 8 Unmodified _GSVQAAKT_ 0 0 0 ENST00000556463.5_1_14:103969437-103969494:+|nuORF ENST00000556463.5_1_14:103969437-103969494:+|nuORF ENST00000556463.5_1_14:103969437-103969494:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2106628417969 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 49.7 1 46.701 46.201 47.201 -2.999 0 0 0 0.23664 1 9090 9090 3.2813 1.9518 1 17463 11240 11464 11468 17531 17531 0.018129672835243582 GTAAGCGGQ 9 Unmodified _GTAAGCGGQ_ 0 0 0 ENST00000267425.7_1_14:24774234-24774294:+|nuORF ENST00000267425.7_1_14:24774234-24774294:+|nuORF ENST00000267425.7_1_14:24774234-24774294:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.1494140625 2 361.15032 720.286088 NaN NaN NaN NaN NaN NaN NaN 73.224 1 69.686 69.186 70.186 -3.5385 0 0 0 0.19669 1 13895 13895 0.37959 0.12811 1 17464 8383 11465 11469 17532 17532 -0.08524398070494499 GTAGFFGLPL 10 Unmodified _GTAGFFGLPL_ 0 0 0 REV__ENST00000251127.10_1_13:102029402-102030948:-|nuORF REV__ENST00000251127.10_1_13:102029402-102030948:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2650146484375 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 158.81 1 153.54 153.04 154.04 -5.2712 0 0 0 0.22588 1 30814 30814 11.64 3.047 1 + 17465 20109 11466 11470 17533 17533 0.027349729028628644 GTAGFIAI 8 Unmodified _GTAGFIAI_ 0 0 0 REV__ENSG00000090013|ENST00000263368|BLVRB REV__ENSG00000090013|ENST00000263368|BLVRB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2124938964844 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 92.677 1 88.752 88.252 89.252 -3.9251 0 0 0 0.23749 1 18152 18152 0.0082765 0 1 + 17466 14541 11467 11471 17534 17534 0.027670567772247523 GTAHCEDVF 9 Unmodified _GTAHCEDVF_ 0 0 0 REV__ENST00000603606.1_1_14:64061078-64061531:-|nuORF REV__ENST00000603606.1_1_14:64061078-64061531:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2662353515625 2 489.702917 977.391281 -0.22822 -0.00011176 0.62618 0.00030664 0.39796 0.00019488 489.70285521758575 94.776 0.41236 90.895 90.606 91.018 -3.881 14 11 2 0 0 0 0.77732 1 18148 18148 7.9102 0 1 661340 + 17467 23435 11468 11472 17535 17535 -0.09831901664733778 GTALAAVSAL 10 Unmodified _GTALAAVSAL_ 0 0 0 tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1 tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1 tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2173767089844 2 437.255643 872.496732 -0.16247 -7.104E-05 -0.21276 -9.303E-05 -0.37523 -0.00016407 437.25554329806135 84.437 0.44917 80.773 80.573 81.023 -3.6641 15 12 2 0 0 0 0.61964 1 16487 16487 18.146 1.0335 1 721870 17468 26270 11469 11473 17536 17536 0.055383825231729134 GTALAAVSAL 10 Unmodified _GTALAAVSAL_ 0 0 0 tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1 tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1 tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2349548339844 2 437.255643 872.496732 -0.18672 -8.1646E-05 0.28129 0.000123 0.094568 4.135E-05 437.2556730646816 84.569 0.48712 80.857 80.594 81.081 -3.7117 20 13 2 0 0 0 0.40256 2 16149 16122;16149 30.637 4.2403 1 625610 17469 26270 11469 11473 17537;17538 17538 0.055383825231729134 GTCGKKVG 8 Unmodified _GTCGKKVG_ 0 0 0 nc|ENSG00000105732|Q6ZN55-2|ZNF574;ENSG00000105732|ENST00000359044|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2141418457031 2 375.202356 748.390159 NaN NaN NaN NaN NaN NaN NaN 111.68 1 107.19 106.69 107.69 -4.4915 0 0 0 0.23749 1 21436 21436 0.0082765 0 1 17470 2338 11470 11474 17539 17539 0.005899287570287015 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2598266601562 2 540.290214 1078.56587 0.28283 0.00015281 0.027547 1.4883E-05 0.31038 0.00016769 540.2902537666836 134.38 0.90973 134.38 133.94 134.85 0 76 25 4 0 0 0 0.037522 3 26614 26614;26650;26654 76.825 36.875 1 34897000 17471 956 11471 11475 17540;17541;17542 17540 0.02973421752108152 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2741088867188 2 540.290214 1078.56587 0.22565 0.00012191 0.16034 8.6631E-05 0.38599 0.00020855 540.2902623941236 138.96 0.8822 134.32 133.84 134.72 -4.6439 68 24 4 0 0 0 0.10083 1 27413 27413 55.503 22.717 1 24889000 17472 956 11471 11475 17543 17543 0.02973421752108152 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2763061523438 2 540.290214 1078.56587 0.33398 0.00018044 0.023615 1.2759E-05 0.35759 0.0001932 540.2901519205283 139.16 1.0862 134.31 133.79 134.88 -4.8492 90 30 5 0 0 0 0.16539 1 26780 26780 41.956 9.1699 1 24959000 17473 956 11471 11475 17544 17544 0.02973421752108152 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.290214 1078.56587 0.17444 9.4246E-05 0.28611 0.00015458 0.46054 0.00024883 540.2903157157385 139.28 1.0323 134.33 133.85 134.88 -4.952 -0.004185 0.00018481 NaN 76.825 83 28 4 NaN NaN NaN NaN 0 NaN NaN 0 27198000 17474 956 11471 11475 0.02973421752108152 GTDETLKR 8 Unmodified _GTDETLKR_ 0 0 0 tr|U7SJT5|U7SJT5_FUSNUSeptumsite-determiningproteinMinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02081PE=4SV=1 tr|U7SJT5|U7SJT5_FUSNUSeptumsite-determiningproteinMinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02081PE=4SV=1 tr|U7SJT5|U7SJT5_FUSNUSeptumsite-determiningproteinMinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02081PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24737548828125 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 36.66 1 34.312 33.812 34.812 -2.3479 0 0 0 0.20618 1 6484 6484 20.454 1.0146 1 17475 25953 11472 11476 17545 17545 0.014560065124328503 GTDGQNSSPG 10 Unmodified _GTDGQNSSPG_ 0 0 0 REV__ENSG00000197565|ENST00000334504|COL4A6 REV__ENSG00000197565|ENST00000334504|COL4A6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22882080078125 2 460.191228 918.367903 -0.10743 -4.944E-05 0.4442 0.00020442 0.33677 0.00015498 460.1911791765419 41.818 0.60229 39.167 38.934 39.537 -2.651 24 16 2 0 0 0 0.70357 1 7549 7549 10.824 2.2306 1 407180 + 17476 19349 11473 11477 17546 17546 -0.09454624177692494 GTDLRQEIY 9 Unmodified _GTDLRQEIY_ 0 0 0 REV__PDE10A|p.N280Tfs*3|1|0.38|ENSG00000112541|chr6:165418764-165418764|T/-|frameshift_variant REV__PDE10A|p.N280Tfs*3|1|0.38|ENSG00000112541|chr6:165418764-165418764|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7887573242188 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 50.903 1 50.903 50.403 51.403 0 0 0 0 0.22193 1 9647 9647 17.113 4.8722 1 + 17477 15302 11474 11478 17547 17547 -0.0026405277030789875 GTDLSIFKY 9 Unmodified _GTDLSIFKY_ 0 0 0 ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50 ENST00000471188.5_1_7:92887656-92969983:+|nuORF ENST00000471188.5_1_7:92887656-92969983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2750244140625 2 522.274032 1042.53351 0.20055 0.00010474 -0.44252 -0.00023112 -0.24197 -0.00012637 522.2740522540261 137.51 0.56395 137.51 137.27 137.83 0 35 15 3 0 0 0 0.02633 4 27268 27258;27268;27323;27331 85.642 57.155 1 5208200 17478 977 11475 11479 17548;17549;17550;17551 17549 0.01394634349117041 GTDLSIFKY 9 Unmodified _GTDLSIFKY_ 0 0 0 ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50 ENST00000471188.5_1_7:92887656-92969983:+|nuORF ENST00000471188.5_1_7:92887656-92969983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2742309570312 2 522.274032 1042.53351 -0.16533 -8.6349E-05 0.45527 0.00023778 0.28994 0.00015143 522.2742140467485 142.27 0.83794 137.61 137.16 138 -4.656 39 23 2 0 0 0 0.016216 2 28134 28083;28134 96.111 63.805 1 7213600 17479 977 11475 11479 17552;17553 17553 0.01394634349117041 GTDLSIFKY 9 Unmodified _GTDLSIFKY_ 0 0 0 ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50 ENST00000471188.5_1_7:92887656-92969983:+|nuORF ENST00000471188.5_1_7:92887656-92969983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2740478515625 2 522.274032 1042.53351 -0.60608 -0.00031654 0.90408 0.00047218 0.298 0.00015564 522.2743896167628 142.56 0.75351 137.53 137.14 137.89 -5.0261 44 21 3 0 0 0 0.053942 3 27516 27418;27427;27516 69.105 43.706 1 5871300 17480 977 11475 11479 17554;17555;17556 17556 0.01394634349117041 GTDLSIFKY 9 Unmodified _GTDLSIFKY_ 0 0 0 ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50 ENST00000471188.5_1_7:92887656-92969983:+|nuORF ENST00000471188.5_1_7:92887656-92969983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2744140625 2 522.274032 1042.53351 0.33343 0.00017414 0.2066 0.0001079 0.54004 0.00028205 522.2740704215456 142.27 0.70543 137.38 137.1 137.81 -4.8982 46 19 3 0 0 0 0.012534 1 27457 27457 99.755 61.781 1 5467400 17481 977 11475 11479 17557 17557 0.01394634349117041 GTDVSKKNA 9 Unmodified _GTDVSKKNA_ 0 0 0 ENSG00000137727|ENST00000683387|ARHGAP20;nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20 ENSG00000137727|ENST00000683387|ARHGAP20 ENSG00000137727|ENST00000683387|ARHGAP20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2483825683594 2 460.245806 918.47706 0.25986 0.0001196 4.1318 0.0019016 4.3917 0.0020212 460.2473155514801 36.68 0.46145 34.343 34.096 34.557 -2.3375 17 12 2 0 0 0 0.46882 1 6456 6456 21.537 1.0834 1 333880 17482 4101 11476 11480 17558 17558 0.014560065124214816 GTEDLLKF 8 Unmodified _GTEDLLKF_ 0 0 0 ENSG00000087301|ENST00000281741|TXNDC16 ENSG00000087301|ENST00000281741|TXNDC16 ENSG00000087301|ENST00000281741|TXNDC16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.54296875 2 461.74765 921.480748 NaN NaN NaN NaN NaN NaN NaN 124.97 1 120.33 119.83 120.83 -4.6495 0 0 0 0.21486 1 24046 24046 11.64 2.2929 1 17483 1715 11477 11481 17559 17559 0.01686676286283273 GTEFGGSIY 9 Unmodified _GTEFGGSIY_ 0 0 0 ENST00000489906.5_1_5:133308464-133311792:-|nuORF;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000213585|ENST00000265333|VDAC1;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2 ENST00000489906.5_1_5:133308464-133311792:-|nuORF ENST00000489906.5_1_5:133308464-133311792:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 930.4727783203125 1 930.420339 929.413062 0.59865 0.000557 0.52392 0.00048747 1.1226 0.0010445 930.4208946428705 97.595 0.75757 97.595 97.227 97.984 0 48 21 3 0 0 0 0.01604 1 19115 19115 96.285 58.311 1 11065000 17484 1582 11478 11482 17560 17560 -0.05446773644530367 GTEFGGSIY 9 Unmodified _GTEFGGSIY_ 0 0 0 ENST00000489906.5_1_5:133308464-133311792:-|nuORF;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000213585|ENST00000265333|VDAC1;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2 ENST00000489906.5_1_5:133308464-133311792:-|nuORF ENST00000489906.5_1_5:133308464-133311792:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 930.4730224609375 1 930.420339 929.413062 0.54987 0.00051161 0.76712 0.00071375 1.317 0.0012254 930.4210464274273 102.27 0.71398 97.945 97.54 98.254 -4.3208 47 20 3 0 0 0 0.01604 1 19634 19634 96.285 50.264 1 9295500 17485 1582 11478 11482 17561 17561 -0.05446773644530367 GTEFTTILY 9 Unmodified _GTEFTTILY_ 0 0 0 nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;TP73|p.Y487Tfs*11|1|0.33|ENSG00000078900|chr1:3731034-3731034|C/-|frameshift_variant;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73 nc|ENSG00000078900|O15350-10|TP73 nc|ENSG00000078900|O15350-10|TP73 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2782592773438 2 522.76604 1043.51753 0.20043 0.00010478 0.31465 0.00016449 0.51508 0.00026927 522.7660570988223 155.24 0.83589 155.24 154.75 155.59 0 49 23 3 0 0 0 0.033228 1 31109 31109 89.427 51.276 1 8338500 17486 12237 11479 11483 17562 17562 -0.0024907188781071454 GTEFTTILY 9 Unmodified _GTEFTTILY_ 0 0 0 nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;TP73|p.Y487Tfs*11|1|0.33|ENSG00000078900|chr1:3731034-3731034|C/-|frameshift_variant;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73 nc|ENSG00000078900|O15350-10|TP73 nc|ENSG00000078900|O15350-10|TP73 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.277587890625 2 522.76604 1043.51753 -0.023138 -1.2096E-05 0.25818 0.00013497 0.23504 0.00012287 522.7661351465182 160.38 0.92007 155.58 155.12 156.04 -4.7952 70 25 4 0 0 0 0.033228 1 31889 31889 77.984 17.595 1 14979000 17487 12237 11479 11483 17563 17563 -0.0024907188781071454 GTEFTTILY 9 Unmodified _GTEFTTILY_ 0 0 0 nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;TP73|p.Y487Tfs*11|1|0.33|ENSG00000078900|chr1:3731034-3731034|C/-|frameshift_variant;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73 nc|ENSG00000078900|O15350-10|TP73 nc|ENSG00000078900|O15350-10|TP73 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2756958007812 2 522.76604 1043.51753 -0.45672 -0.00023876 0.58973 0.00030829 0.13301 6.9533E-05 522.7663081179454 160.85 0.78406 155.62 155.33 156.12 -5.2298 55 21 3 0 0 0 0.029432 1 31270 31270 109.63 49.24 1 11630000 17488 12237 11479 11483 17564 17564 -0.0024907188781071454 GTEGKLFDL 9 Unmodified _GTEGKLFDL_ 0 0 0 REV__ENST00000477475.1_1_20:36028687-36030250:+|nuORF REV__ENST00000477475.1_1_20:36028687-36030250:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2583923339844 2 490.258382 978.502212 -0.056015 -2.7462E-05 0.35437 0.00017373 0.29835 0.00014627 490.2584758986829 38.384 0.42171 35.979 35.809 36.231 -2.4049 25 11 3 0 0 0 0.35556 1 6869 6869 12.241 6.0349 1 1807900 + 17489 19307 11480 11484 17565 17565 0.012100613149868877 GTEHVLRIHVL 11 Unmodified _GTEHVLRIHVL_ 0 0 0 ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1 ENSG00000139641|ENST00000394048|ESYT1 ENSG00000139641|ENST00000394048|ESYT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2515563964844 3 425.250695 1272.73025 NaN NaN NaN NaN NaN NaN NaN 175.43 1 170.55 170.05 171.05 -4.8845 0 0 0 0.23698 1 34886 34886 1.3296 0.55311 1 17490 4258 11481 11485 17566 17566 0.10479858962685284 GTEHVLRIHVL 11 Unmodified _GTEHVLRIHVL_ 0 0 0 ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1 ENSG00000139641|ENST00000394048|ESYT1 ENSG00000139641|ENST00000394048|ESYT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2528381347656 3 425.250695 1272.73025 NaN NaN NaN NaN NaN NaN NaN 175.65 1 170.77 170.27 171.27 -4.8739 0 0 0 0.23698 1 34930 34930 1.3296 0.92138 1 17491 4258 11481 11485 17567 17567 0.10479858962685284 GTEHVLRIHVL 11 Unmodified _GTEHVLRIHVL_ 0 0 0 ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1 ENSG00000139641|ENST00000394048|ESYT1 ENSG00000139641|ENST00000394048|ESYT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25250244140625 3 425.250695 1272.73025 NaN NaN NaN NaN NaN NaN NaN 176.31 1 171.43 170.93 171.93 -4.8739 0 0 0 0.23698 1 35070 35070 0.45452 0 1 17492 4258 11481 11485 17568 17568 0.10479858962685284 GTEKEAKEA 9 Unmodified _GTEKEAKEA_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant;MYO18B|p.F144Sfs*5|1|0.12|ENSG00000133454|chr22:25768342-25768342|C/-|frameshift_variant;MYO18B|p.P177Lfs*55|2|0.24|ENSG00000133454|chr22:25768440-25768440|C/-|frameshift_variant;MYO18B|p.V340Cfs*3|1|0.35|ENSG00000133454|chr22:25768931-25768931|G/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7829895019531 2 481.743096 961.47164 NaN NaN NaN NaN NaN NaN NaN 23.399 1 23.399 22.899 23.899 0 0 0 0 0.19657 1 3992 3992 4.897 0 1 17493 3804 11482 11486 17569 17569 -0.010637170700533716 GTESCRKYLF 10 Unmodified _GTESCRKYLF_ 0 0 0 ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1;ENST00000482260.1_1_X:48563729-48565958:+|nuORF;ENST00000462786.1_1_X:48564870-48565958:+|nuORF ENSG00000101945|ENST00000376687|SUV39H1 ENSG00000101945|ENST00000376687|SUV39H1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2958374023438 2 602.294973 1202.57539 NaN NaN NaN NaN NaN NaN NaN 101.85 1 97.524 97.024 98.024 -4.3208 0 0 0 2.8426 1 19493 19493 1.0651 0.85782 1 17494 2099 11483 11487 17570 17570 -0.017791332340493682 GTETRSDFY 9 Unmodified _GTETRSDFY_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 538.1451416015625 2 538.238178 1074.4618 0.13822 7.4395E-05 -0.18456 -9.934E-05 -0.046345 -2.4945E-05 538.2379590911677 46.046 0.62324 43.205 42.898 43.521 -2.8409 44 17 4 0 0 0 0.79204 1 8678 8678 16.942 9.6531 1 6455600 17495 2900 11484 11488 17571 17571 -0.07244905075435781 GTETRSDFY 9 Unmodified _GTETRSDFY_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 538.238178 1074.4618 0.46892 0.00025239 -0.75248 -0.00040502 -0.28356 -0.00015262 538.2376958606364 43.06 0.66118 43.06 42.736 43.397 0 -0.068249 -0.00049085 NaN 16.942 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4105800 17496 2900 11484 11488 -0.07244905075435781 GTETRSDFY 9 Unmodified _GTETRSDFY_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 538.238178 1074.4618 0.16531 8.8975E-05 -0.2565 -0.00013806 -0.09119 -4.9082E-05 538.2378068320312 46.008 0.75682 43.142 42.796 43.553 -2.8653 0.014207 4.307E-05 NaN 16.942 50 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5579100 17497 2900 11484 11488 -0.07244905075435781 GTETRSDFY 9 Unmodified _GTETRSDFY_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 538.238178 1074.4618 -0.029298 -1.5769E-05 0.18062 9.7218E-05 0.15133 8.1449E-05 538.2379658631228 45.972 0.82976 43.105 42.747 43.577 -2.8665 -0.023024 0.00051362 NaN 16.942 58 23 3 NaN NaN NaN NaN 0 NaN NaN 0 4541800 17498 2900 11484 11488 -0.07244905075435781 GTFIGDGDTY 10 Unmodified _GTFIGDGDTY_ 0 0 0 nc|ENSG00000106683|P53667-3|LIMK1;nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1 nc|ENSG00000106683|P53667-3|LIMK1 nc|ENSG00000106683|P53667-3|LIMK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.694580078125 2 523.227279 1044.44001 -0.15564 -8.1434E-05 0.68154 0.0003566 0.5259 0.00027517 523.2275799324519 98.367 0.58933 94.234 94.021 94.61 -4.1326 33 16 3 0 0 0 0.67319 1 19295 19295 13.906 0.39817 1 2768100 17499 2400 11485 11489 17572 17572 -0.08043709823982681 GTFIGDGDTY 10 Unmodified _GTFIGDGDTY_ 0 0 0 nc|ENSG00000106683|P53667-3|LIMK1;nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1 nc|ENSG00000106683|P53667-3|LIMK1 nc|ENSG00000106683|P53667-3|LIMK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.227279 1044.44001 -0.057006 -2.9827E-05 0.92627 0.00048465 0.86926 0.00045482 523.2278000228 93.941 0.24638 93.941 93.759 94.005 0 -0.21753 0.00030491 NaN 13.906 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1147900 17500 2400 11485 11489 -0.08043709823982681 GTFIGDGDTY 10 Unmodified _GTFIGDGDTY_ 0 0 0 nc|ENSG00000106683|P53667-3|LIMK1;nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1 nc|ENSG00000106683|P53667-3|LIMK1 nc|ENSG00000106683|P53667-3|LIMK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.227279 1044.44001 0.14197 7.4281E-05 -0.091559 -4.7906E-05 0.050408 2.6375E-05 523.2271472838295 98.164 0.44041 94.207 94.024 94.465 -3.9564 0.048708 -0.0007602 NaN 13.906 20 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1393500 17501 2400 11485 11489 -0.08043709823982681 GTGELDLTAT 10 Unmodified _GTGELDLTAT_ 0 0 0 ENSG00000185591|ENST00000327443|SP1;nc|ENSG00000185591|P08047-2|SP1 ENSG00000185591|ENST00000327443|SP1 ENSG00000185591|ENST00000327443|SP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25689697265625 2 489.242929 976.471305 0.18713 9.1554E-05 -0.15868 -7.7632E-05 0.028456 1.3922E-05 489.24263931232946 29.176 0.41671 27.179 27.007 27.423 -1.9962 18 11 3 0 0 0 0.51199 1 4974 4974 24.021 0 1 289440 17502 7001 11486 11490 17573 17573 -0.017871367898919743 GTGTLGGRWG 10 Unmodified _GTGTLGGRWG_ 0 0 0 ENST00000456101.6_1_6:109773431-109775944:-|nuORF ENST00000456101.6_1_6:109773431-109775944:-|nuORF ENST00000456101.6_1_6:109773431-109775944:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24481201171875 2 481.246141 960.477728 NaN NaN NaN NaN NaN NaN NaN 127.21 1 122.41 121.91 122.91 -4.7958 0 0 0 2.8426 1 24416 24416 14.405 12.714 1 17503 10024 11487 11491 17574 17574 -0.0040915404786119325 GTGVHLDPAP 10 Unmodified _GTGVHLDPAP_ 0 0 0 ENST00000250916.5_1_19:1852736-1853027:-|nuORF ENST00000250916.5_1_19:1852736-1853027:-|nuORF ENST00000250916.5_1_19:1852736-1853027:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7745056152344 2 482.248349 962.482145 0.070678 3.4084E-05 -0.1603 -7.7307E-05 -0.089627 -4.3222E-05 482.24826925154287 27.639 1.2369 27.639 27.115 28.352 0 61 35 2 0 0 0 0.871 1 4952 4952 10.074 2.7847 1 1554000 17504 8219 11488 11492 17575 17575 -0.0005968962495899177 GTGVSTPQAEP 11 Unmodified _GTGVSTPQAEP_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2676391601562 2 522.253828 1042.4931 NaN NaN NaN NaN NaN NaN NaN 27.384 1 27.384 26.884 27.884 0 0 0 0 0.19239 1 4829 4829 20.581 0 1 + 17505 14574 11489 11493 17576 17576 -0.026443320413363836 GTHGLLVKQE 10 Unmodified _GTHGLLVKQE_ 0 0 0 ENSG00000175899|ENST00000318602|A2M;ENST00000472360.1_1_12:9251139-9254147:-|nuORF ENSG00000175899|ENST00000318602|A2M ENSG00000175899|ENST00000318602|A2M MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2595825195312 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 125.19 1 120.54 120.04 121.04 -4.6495 0 0 0 0.22588 1 24084 24084 5.7319 0 1 17506 6440 11490 11494 17577 17577 0.055685303633026706 GTHMLFSY 8 Unmodified _GTHMLFSY_ 0 0 0 REV__ENSG00000081052|ENST00000396625|COL4A4 REV__ENSG00000081052|ENST00000396625|COL4A4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7411193847656 2 478.220746 954.426938 -0.18276 -8.7399E-05 -3.0995 -0.0014823 -3.2823 -0.0015697 478.2186293782613 104.39 0.67938 100.17 99.756 100.44 -4.2183 26 19 2 0 0 0 0.89552 1 20482 20482 4.756 0 1 1280600 + 17507 14424 11491 11495 17578 17578 -0.05209819417075323 GTIEYDPRTY 10 Unmodified _GTIEYDPRTY_ 0 0 0 ENSG00000102195|ENST00000218316|GPR50;GPR50|p.P523Afs*8|1|0.18|ENSG00000102195|chrX:151181146-151181147|-/A|frameshift_variant ENSG00000102195|ENST00000218316|GPR50 ENSG00000102195|ENST00000218316|GPR50 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.2347106933594 3 405.527782 1213.56152 0.1462 5.9286E-05 -0.16836 -6.8274E-05 -0.022162 -8.9875E-06 405.86210661570334 39.945 0.60254 39.945 39.679 40.281 0 31 16 2 0 0 0 0.91149 1 7460 7460 0.69767 0 1 2463700 17508 2115 11492 11496 17579 17579 -0.03672087461472984 GTITIFFGLL 10 Unmodified _GTITIFFGLL_ 0 0 0 REV__tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1 REV__tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.268310546875 2 541.318243 1080.62193 NaN NaN NaN NaN NaN NaN NaN 124.83 1 120.18 119.68 120.68 -4.6495 0 0 0 0.22588 1 24018 24018 6.7232 0 1 + 17509 25277 11493 11497 17580 17580 0.0848467465957583 GTLCECYDE 9 Unmodified _GTLCECYDE_ 0 0 0 ENSG00000165886|ENST00000370664|UBTD1 ENSG00000165886|ENST00000370664|UBTD1 ENSG00000165886|ENST00000370664|UBTD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.7925720214844 3 344.793142 1031.3576 NaN NaN NaN NaN NaN NaN NaN 24.348 1 24.348 23.848 24.848 0 0 0 0 0.19657 1 4192 4192 4.897 1.6157 1 17510 5670 11494 11498 17581 17581 -0.1568269121883077 GTLDLELPG 9 Unmodified _GTLDLELPG_ 0 0 0 REV__nc|ENSG00000141522|P52565-2|ARHGDIA REV__nc|ENSG00000141522|P52565-2|ARHGDIA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2378845214844 2 457.745108 913.475663 -0.47318 -0.0002166 0.60526 0.00027705 0.13208 6.0458E-05 457.7453354799359 106.6 1.2181 102.34 101.62 102.84 -4.2638 71 34 4 0 0 0 0.23667 1 21037 21037 42.095 0 1 16430000 + 17511 16635 11495 11499 17582 17582 0.015463724236724374 GTLEGFKVE 9 Unmodified _GTLEGFKVE_ 0 0 0 ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT;PCNT|p.G2137Vfs*2|1|0.18|ENSG00000160299|chr21:46416323-46416323|G/-|frameshift_variant ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2587890625 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 83.492 1 83.492 82.992 83.992 0 0 0 0 0.19657 1 16280 16280 4.897 0 1 17512 5247 11496 11500 17583 17583 0.012100613149982564 GTLEGFKVE 9 Unmodified _GTLEGFKVE_ 0 0 0 ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT;PCNT|p.G2137Vfs*2|1|0.18|ENSG00000160299|chr21:46416323-46416323|G/-|frameshift_variant ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2602844238281 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 87.434 1 83.439 82.939 83.939 -3.9953 0 0 0 0.19657 1 16650 16650 4.897 0 1 17513 5247 11496 11500 17584 17584 0.012100613149982564 GTLEHKLKWTF 11 Unmodified _GTLEHKLKWTF_ 0 0 0 ENSG00000112599|ENST00000230361|GUCA1B ENSG00000112599|ENST00000230361|GUCA1B ENSG00000112599|ENST00000230361|GUCA1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7555847167969 3 453.918834 1358.73467 NaN NaN NaN NaN NaN NaN NaN 107.48 1 103.34 102.84 103.84 -4.135 0 0 0 0.22632 1 20673 20673 0.58532 0.54153 1 17514 2701 11497 11501 17585 17585 0.06965323385588817 GTLGRRKAA 9 Unmodified _GTLGRRKAA_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2472839355469 2 465.2856 928.556647 NaN NaN NaN NaN NaN NaN NaN 74.448 1 74.448 73.948 74.948 0 0 0 0 0.19512 1 14454 14454 12.241 2.0901 1 17515 7409 11498 11502 17586 17586 0.08951117977073864 GTLLRVVLGY 10 Unmodified _GTLLRVVLGY_ 0 0 0 REV__nc|ENSG00000104133|Q96JI7-3|SPG11 REV__nc|ENSG00000104133|Q96JI7-3|SPG11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 364.49029541015625 3 364.225486 1089.65463 0.091652 3.3382E-05 0.1554 5.6601E-05 0.24705 8.9983E-05 364.55979881664985 141.91 0.746 136.92 136.63 137.38 -4.9877 36 21 3 0 0 0 0.52989 1 27277 27277 0.043787 0 1 2315600 + 17516 14906 11499 11503 17587 17587 0.11338881782421595 GTMSNPVTV 9 Unmodified _GTMSNPVTV_ 0 0 0 ENSG00000136451|ENST00000581208|VEZF1 ENSG00000136451|ENST00000581208|VEZF1 ENSG00000136451|ENST00000581208|VEZF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7557067871094 2 453.223485 904.432418 0.21157 9.5887E-05 0.11579 5.248E-05 0.32736 0.00014837 453.2233898452441 72.653 0.58467 72.653 72.266 72.85 0 22 16 2 0 0 0 0.76271 1 14068 14068 20.454 13.164 1 1689400 17517 4012 11500 11504 17588 17588 -0.02362140625257325 GTNFFTGE 8 Unmodified _GTNFFTGE_ 0 0 0 ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA ENST00000514698.5_1_4:980866-997838:+|nuORF ENST00000514698.5_1_4:980866-997838:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22027587890625 2 436.692875 871.371197 0.35197 0.0001537 0.51137 0.00022331 0.86333 0.00037701 436.69309781731243 29.772 0.524 27.698 27.483 28.007 -2.0743 21 14 2 0 0 0 8448 1 5099 5099 3.2813 0 1 365000 17518 3474 11501 11505 17589 17589 -0.06963329333029833 GTNFFTGE 8 Unmodified _GTNFFTGE_ 0 0 0 ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA ENST00000514698.5_1_4:980866-997838:+|nuORF ENST00000514698.5_1_4:980866-997838:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22784423828125 2 436.692875 871.371197 0.53157 0.00023213 1.3594 0.00059364 1.891 0.00082578 436.6939030710148 106.99 0.964 102.86 102.46 103.42 -4.135 92 27 4 0 0 0 8448 1 20653 20653 6.2058 0 1 9554400 17519 3474 11501 11505 17590 17590 -0.06963329333029833 GTPSNPGASQK 11 Unmodified _GTPSNPGASQK_ 0 0 0 REV__nc|ENSG00000214655|A7E2V4-2|ZSWIM8 REV__nc|ENSG00000214655|A7E2V4-2|ZSWIM8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26806640625 2 522.259445 1042.50434 -0.004935 -2.5774E-06 -0.52275 -0.00027301 -0.52769 -0.00027559 522.7605501408594 19.929 0.38244 18.533 18.412 18.795 -1.3966 15 10 2 0 0 0 0.72351 1 3355 3355 10.151 0.76745 1 947200 + 17520 24267 11502 11506 17591 17591 -0.015215099471788562 GTPVFPGF 8 Unmodified _GTPVFPGF_ 0 0 0 REV__ENST00000558270.1_1_15:41272423-41275357:-|nuORF REV__ENST00000558270.1_1_15:41272423-41275357:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.1073913574219 2 411.213246 820.41194 NaN NaN NaN NaN NaN NaN NaN 48.414 1 45.472 44.972 45.972 -2.9421 0 0 0 0.21486 1 8840 8840 5.7604 0 1 + 17521 23022 11503 11507 17592 17592 -0.005449432227578654 GTQIFFSY 8 Unmodified _GTQIFFSY_ 0 0 0 SLC6A11|p.F358Lfs*31|1|0.55|ENSG00000132164|chr3:10918404-10918404|T/-|frameshift_variant;ENSG00000132164|ENST00000254488|SLC6A11;ENSG00000131389|ENST00000622186|SLC6A6;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;nc|ENSG00000130821|P48029-2|SLC6A8 SLC6A11|p.F358Lfs*31|1|0.55|ENSG00000132164|chr3:10918404-10918404|T/-|frameshift_variant;ENST00000485324.1_1_X:152958408-152959565:+|nuORF ENST00000485324.1_1_X:152958408-152959565:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77996826171875 2 481.734543 961.454533 -0.010399 -5.0095E-06 0.2466 0.00011879 0.2362 0.00011379 481.73490975077095 43.201 0.9996 40.435 40.114 41.113 -2.7661 55 27 3 0 0 0 0.71273 1 7750 7750 12.532 0 1 8009600 17522 3707;3642 11504 11508 17593 17593 -0.027735928851939207 GTQPDFYCNLC 11 Unmodified _GTQPDFYCNLC_ 0 0 0 REV__nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC REV__nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7619018554688 2 630.754824 1259.49509 NaN NaN NaN NaN NaN NaN NaN 100.12 1 95.822 95.322 96.322 -4.297 0 0 0 0.23087 1 19144 19144 7.609 2.3783 1 + 17523 17601 11505 11509 17594 17594 -0.1242736261938262 GTQVVEKVV 9 Unmodified _GTQVVEKVV_ 0 0 0 ENSG00000125730|ENST00000245907|C3;C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 480.2236022949219 2 479.782025 957.549496 -0.2851 -0.00013679 0.15999 7.676E-05 -0.12511 -6.0028E-05 479.7821333845784 105.78 0.66444 101.52 101.13 101.8 -4.2638 22 18 2 0 0 0 0.59016 1 20743 20743 0.12781 0 1 1025600 17524 3379 11506 11510 17595 17595 0.06902340586009359 GTQVVEKVV 9 Unmodified _GTQVVEKVV_ 0 0 0 ENSG00000125730|ENST00000245907|C3;C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.782025 957.549496 0.068927 3.307E-05 -0.55178 -0.00026473 -0.48285 -0.00023166 479.78179392244493 105.94 0.45302 101.56 101.34 101.79 -4.3764 -0.031318 -6.0582E-05 NaN 0.12781 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1143700 17525 3379 11506 11510 0.06902340586009359 GTQVVEKVV 9 Unmodified _GTQVVEKVV_ 0 0 0 ENSG00000125730|ENST00000245907|C3;C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 479.782025 957.549496 0.70778 0.00033958 -1.2215 -0.00058604 -0.51369 -0.00024646 479.7815795497811 105.78 0.52258 101.69 101.43 101.95 -4.0913 0.10132 -0.0007032 NaN 0.12781 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1340000 17526 3379 11506 11510 0.06902340586009359 GTSMRLWSQ 9 Unmodified _GTSMRLWSQ_ 0 0 0 REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2725830078125 2 533.260933 1064.50731 0.046466 2.4778E-05 0.28345 0.00015115 0.32992 0.00017593 533.2610803424251 95.445 0.8682 91.564 91.194 92.062 -3.881 52 24 3 0 0 0 0.5428 1 18405 18405 4.897 0 1 6391800 + 17527 16557 11507 11511 17596 17596 -0.022359580940246815 GTTKSKGA 8 Unmodified _GTTKSKGA_ 0 0 0 REV__ENST00000287647.7_1_3:10068115-10070317:+|nuORF REV__ENST00000287647.7_1_3:10068115-10070317:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2121887207031 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 53.714 1 50.83 50.33 51.33 -2.8837 0 0 0 0.2325 1 10234 10234 0.62683 0 1 + 17528 20340 11508 11512 17597 17597 0.023649672835290403 GTTLNHSIS 9 Unmodified _GTTLNHSIS_ 0 0 0 nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant nc|ENSG00000166833|Q8IVL1-11|NAV2 nc|ENSG00000166833|Q8IVL1-11|NAV2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23736572265625 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 160.38 1 155.15 154.65 155.65 -5.2299 0 0 0 0.23508 1 31139 31139 7.2892 1.0834 1 17529 12442 11509 11513 17598 17598 -0.005682800045974545 GTTPLCLGSP 10 Unmodified _GTTPLCLGSP_ 0 0 0 REV__ENST00000362042.7_1_17:46137782-46138226:+|nuORF REV__ENST00000362042.7_1_17:46137782-46138226:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 473.23480224609375 2 473.239135 944.463718 NaN NaN NaN NaN NaN NaN NaN 85.273 1 81.363 80.863 81.863 -3.9093 0 0 0 2.8426 1 16216 16216 19.362 18.147 1 + 17530 20896 11510 11514 17599 17599 -0.010735675911519138 GTVALLQSVR 10 Unmodified _GTVALLQSVR_ 0 0 0 REV__nc|ENSG00000067955|Q13951|CBFB REV__nc|ENSG00000067955|Q13951|CBFB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2669677734375 2 522.314023 1042.61349 -1.4949 -0.00078081 1.1294 0.0005899 -0.3655 -0.0001909 522.3144367196323 15.882 0.23971 14.528 14.376 14.615 -1.3534 10 6 2 0 0 0 0.91149 1 2233 2233 6.2058 3.2105 1 260300 + 17531 23945 11511 11515 17600 17600 0.0938912074293512 GTVIVRVPEI 10 Unmodified _GTVIVRVPEI_ 0 0 0 tr|U7ST49|U7ST49_FUSNUProtein-exportmembraneproteinSecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secFPE=3SV=1 tr|U7ST49|U7ST49_FUSNUProtein-exportmembraneproteinSecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secFPE=3SV=1 tr|U7ST49|U7ST49_FUSNUProtein-exportmembraneproteinSecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secFPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27978515625 2 541.832049 1081.64954 0.29304 0.00015878 0.19916 0.00010791 0.4922 0.00026669 541.8318483977197 125.83 1.0547 121.18 120.6 121.66 -4.6495 52 29 3 0 0 0 0.85223 1 24175 24175 8.7454 0 1 1863700 17532 26123 11512 11516 17601 17601 0.1119857791979939 GTVMGTLRS 9 Unmodified _GTVMGTLRS_ 0 0 0 ENST00000514031.5_1_4:2932567-2933551:-|nuORF;ENSG00000109736|ENST00000355443|MFSD10 ENST00000514031.5_1_4:2932567-2933551:-|nuORF ENST00000514031.5_1_4:2932567-2933551:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5447998046875 2 461.244752 920.474951 -0.1679 -7.7441E-05 3.1435 0.0014499 2.9756 0.0013725 461.24586225281564 48.477 0.69811 45.607 45.273 45.971 -2.869 28 19 2 0 0 0 0.36034 1 9156 9156 43.858 0.085901 1 1278300 17533 2540 11513 11517 17602 17602 0.01153254502969503 GTVMGTLRS 9 Unmodified _GTVMGTLRS_ 0 0 0 ENST00000514031.5_1_4:2932567-2933551:-|nuORF;ENSG00000109736|ENST00000355443|MFSD10 ENST00000514031.5_1_4:2932567-2933551:-|nuORF ENST00000514031.5_1_4:2932567-2933551:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.244752 920.474951 0.52146 0.00024052 2.0422 0.00094194 2.5636 0.0011825 461.24509185348643 45.66 1.0077 45.66 45.307 46.315 0 0.05414 -0.00030938 NaN 43.858 39 28 2 NaN NaN NaN NaN 0 NaN NaN 0 1157100 17534 2540 11513 11517 0.01153254502969503 GTVMGTLRS 9 Unmodified _GTVMGTLRS_ 0 0 0 ENST00000514031.5_1_4:2932567-2933551:-|nuORF;ENSG00000109736|ENST00000355443|MFSD10 ENST00000514031.5_1_4:2932567-2933551:-|nuORF ENST00000514031.5_1_4:2932567-2933551:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.244752 920.474951 -0.084223 -3.8847E-05 1.6265 0.00075023 1.5423 0.00071138 461.2451312685891 48.499 0.97209 45.549 45.19 46.163 -2.9499 -0.056116 -0.0006928 NaN 43.858 41 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1154300 17535 2540 11513 11517 0.01153254502969503 GTVMKQWSDQ 10 Unmodified _GTVMKQWSDQ_ 0 0 0 REV__HBG2|p.A129D|1|0.13|ENSG00000196565|chr11:5253335-5253335|G/T|missense_variant REV__HBG2|p.A129D|1|0.13|ENSG00000196565|chr11:5253335-5253335|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2686767578125 2 590.27678 1178.53901 NaN NaN NaN NaN NaN NaN NaN 86.26 1 82.31 81.81 82.81 -3.9503 0 0 0 0.22566 1 16418 16418 16.149 1.3108 1 + 17536 23604 11514 11518 17603 17603 -0.043120101307295045 GTVQKEME 8 Unmodified _GTVQKEME_ 0 0 0 REV__ENST00000560701.1_1_15:40581382-40582938:-|nuORF REV__ENST00000560701.1_1_15:40581382-40582938:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5447998046875 2 461.220943 920.427332 -0.16093 -7.4224E-05 0.54499 0.00025136 0.38406 0.00017714 461.221121478387 48.25 0.67434 45.381 44.983 45.657 -2.869 33 18 2 0 0 0 0.64227 1 9156 9156 19.439 0.18201 1 2056000 + 17537 23042 11515 11519 17604 17604 -0.03606444487877525 GTVQKEME 8 Unmodified _GTVQKEME_ 0 0 0 REV__ENST00000560701.1_1_15:40581382-40582938:-|nuORF REV__ENST00000560701.1_1_15:40581382-40582938:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.220943 920.427332 0.51442 0.00023726 -0.34817 -0.00016058 0.16625 7.6678E-05 461.22071464643864 45.439 0.52906 45.439 45.092 45.621 0 0.039685 -0.00050102 NaN 19.439 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1467800 + 17538 23042 11515 11519 -0.03606444487877525 GTVQKEME 8 Unmodified _GTVQKEME_ 0 0 0 REV__ENST00000560701.1_1_15:40581382-40582938:-|nuORF REV__ENST00000560701.1_1_15:40581382-40582938:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.220943 920.427332 -0.16093 -7.4224E-05 0.54499 0.00025136 0.38406 0.00017714 461.221121478387 48.25 0.67434 45.381 44.983 45.657 -2.869 -0.018497 0.00032287 NaN 19.439 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2056000 + 17539 23042 11515 11519 -0.03606444487877525 GTVQKEME 8 Unmodified _GTVQKEME_ 0 0 0 REV__ENST00000560701.1_1_15:40581382-40582938:-|nuORF REV__ENST00000560701.1_1_15:40581382-40582938:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.220943 920.427332 -0.085978 -3.9655E-05 0.29588 0.00013646 0.2099 9.681E-05 461.2210194054323 48.331 0.66503 45.381 45.156 45.821 -2.9499 -0.018909 9.3075E-05 NaN 19.439 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1405300 + 17540 23042 11515 11519 -0.03606444487877525 GTWDLPGDFG 10 Unmodified _GTWDLPGDFG_ 0 0 0 ENST00000580170.5_1_18:7567593-7774159:+|nuORF ENST00000580170.5_1_18:7567593-7774159:+|nuORF ENST00000580170.5_1_18:7567593-7774159:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2718505859375 2 532.737814 1063.46108 0.22629 0.00012055 -0.088914 -4.7368E-05 0.13738 7.3185E-05 532.7376901541933 109.29 0.55495 104.83 104.53 105.09 -4.4518 21 15 2 0 0 0 0.89521 1 20991 20991 1.4819 0 1 1087600 17541 11491 11516 11520 17605 17605 -0.0681169972447151 GTWKISARF 9 Unmodified _GTWKISARF_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000467948.1_1_6:31950925-31952132:+|nuORF;CON__ENSEMBL:ENSBTAP00000007350;CON__P01030 nc|ENSG00000244731|P0C0L4-2|C4A;CON__ENSEMBL:ENSBTAP00000007350;CON__P01030 CON__ENSEMBL:ENSBTAP00000007350 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2826538085938 2 533.295633 1064.57671 0.1125 5.9993E-05 0.24231 0.00012922 0.3548 0.00018921 533.2958883014185 95.112 1.049 91.063 90.744 91.793 -4.0496 37 29 2 0 0 0 0.76271 1 18614 18614 14.838 4.0143 1 1178900 + 17542 7781;638;649 11517 11521 17606 17606 0.04700868917029766 GTWLVEWLR 9 Unmodified _GTWLVEWLR_ 0 0 0 REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17 REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.2123107910156 3 387.213469 1158.61858 NaN NaN NaN NaN NaN NaN NaN 54.513 1 51.377 50.877 51.877 -3.1352 0 0 0 0.23508 1 10059 10059 4.5289 1.2092 1 + 17543 14953 11518 11522 17607 17607 0.04561424605526554 GTWLVEWLR 9 Unmodified _GTWLVEWLR_ 0 0 0 REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17 REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.2126770019531 3 387.213469 1158.61858 NaN NaN NaN NaN NaN NaN NaN 54.967 1 51.832 51.332 52.332 -3.1352 0 0 0 0.23508 1 10150 10150 4.5289 1.2092 1 + 17544 14953 11518 11522 17608 17608 0.04561424605526554 GTWNGTTKV 9 Unmodified _GTWNGTTKV_ 0 0 0 ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7864074707031 2 482.248349 962.482145 0.030662 1.4787E-05 -0.71252 -0.00034361 -0.68186 -0.00032882 482.247859232354 46.193 0.65895 43.327 43.033 43.692 -2.8653 29 18 2 0 0 0 0.27332 1 8410 8410 43.772 5.7984 1 5066700 17545 6449 11519 11523 17609 17609 -0.0005968962495899177 GTWNGTTKV 9 Unmodified _GTWNGTTKV_ 0 0 0 ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 482.248349 962.482145 0.26359 0.00012712 -0.9933 -0.00047902 -0.72971 -0.0003519 482.247778020421 43.231 0.6858 43.231 42.919 43.604 0 -0.075764 -0.00023708 NaN 43.772 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3645300 17546 6449 11519 11523 -0.0005968962495899177 GTWNGTTKV 9 Unmodified _GTWNGTTKV_ 0 0 0 ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 482.248349 962.482145 0.025168 1.2137E-05 -0.79527 -0.00038352 -0.7701 -0.00037138 482.24790889381774 46.145 0.62257 43.304 43.003 43.626 -2.8409 -0.0020656 -4.6072E-05 NaN 43.772 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4752600 17547 6449 11519 11523 -0.0005968962495899177 GUGGSSPG 8 Unmodified _GUGGSSPG_ 0 0 0 REV__ENSG00000131871|ENST00000526049|SELENOS REV__ENSG00000131871|ENST00000526049|SELENOS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 669.1575927734375 1 669.174152 668.166876 0.32806 0.00021953 0.26429 0.00017686 0.59235 0.00039639 669.175132249409 16.04 0.72609 16.04 15.473 16.199 0 29 20 2 0 0 0 0.89856 1 2401 2401 0 0 0 1251800 + 17548 16092 11520 11524 17610 17610 -0.1804809225865256 GUGGSSPG 8 Unmodified _GUGGSSPG_ 0 0 0 REV__ENSG00000131871|ENST00000526049|SELENOS REV__ENSG00000131871|ENST00000526049|SELENOS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 669.1727905273438 1 669.174152 668.166876 0.39039 0.00026124 -1.7886 -0.0011969 -1.3982 -0.00093561 669.1747292675348 38.878 1.1831 36.473 35.742 36.925 -2.4049 46 33 3 0 0 0 0.89856 1 6809 6809 0 0 0 1291500 + 17549 16092 11520 11524 17611 17611 -0.1804809225865256 GUGGSSPG 8 Unmodified _GUGGSSPG_ 0 0 0 REV__ENSG00000131871|ENST00000526049|SELENOS REV__ENSG00000131871|ENST00000526049|SELENOS MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 669.174152 668.166876 0.32806 0.00021953 0.26429 0.00017686 0.59235 0.00039639 669.175132249409 16.04 0.72609 16.04 15.473 16.199 0 -0.11164 -7.6178E-05 NaN 0 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1251800 + 17550 16092 11520 11524 -0.1804809225865256 GUGGSSPG 8 Unmodified _GUGGSSPG_ 0 0 0 REV__ENSG00000131871|ENST00000526049|SELENOS REV__ENSG00000131871|ENST00000526049|SELENOS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 669.174152 668.166876 -0.23901 -0.00015994 0.41625 0.00027855 0.17724 0.00011861 669.1752746533821 17.536 2.8513 16.264 14.317 17.169 -1.2722 0.11164 2.5511E-05 NaN 0 122 82 2 NaN NaN NaN NaN 0 NaN NaN 0 1417600 + 17551 16092 11520 11524 -0.1804809225865256 GVAALIFGYIQ 11 Unmodified _GVAALIFGYIQ_ 0 0 0 ABCB5|p.N188Tfs*14|1|0.11|ENSG00000004846|chr7:20643514-20643514|A/-|frameshift_variant;ENSG00000004846|ENST00000404938|ABCB5 ABCB5|p.N188Tfs*14|1|0.11|ENSG00000004846|chr7:20643514-20643514|A/-|frameshift_variant ABCB5|p.N188Tfs*14|1|0.11|ENSG00000004846|chr7:20643514-20643514|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.331787109375 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 122.68 1 117.95 117.45 118.45 -4.731 0 0 0 0.22775 1 23563 23563 10.074 2.1638 1 17552 15 11521 11525 17612 17612 0.06935175545504535 GVAAVLAGTA 10 Unmodified _GVAAVLAGTA_ 0 0 0 SLC25A52|p.I267Sfs*9|1|0.1|ENSG00000141437|chr18:31759893-31759893|T/-|frameshift_variant;ENSG00000141437|ENST00000269205|SLC25A52 SLC25A52|p.I267Sfs*9|1|0.1|ENSG00000141437|chr18:31759893-31759893|T/-|frameshift_variant SLC25A52|p.I267Sfs*9|1|0.1|ENSG00000141437|chr18:31759893-31759893|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2428894042969 2 415.242535 828.470518 NaN NaN NaN NaN NaN NaN NaN 81.111 1 77.272 76.772 77.772 -3.8392 0 0 0 0.22588 1 15397 15397 7.2892 2.0586 1 17553 4365 11522 11526 17613 17613 0.04942113351705757 GVACFQGFK 9 Unmodified _GVACFQGFK_ 0 0 0 REV__PMPCA|p.T89A|1|0.32|ENSG00000165688|chr9:136412190-136412190|A/G|missense_variant REV__PMPCA|p.T89A|1|0.32|ENSG00000165688|chr9:136412190-136412190|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7334899902344 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 155.03 1 155.03 154.53 155.53 0 0 0 0 0.19652 1 31075 31075 0.40827 0.36448 1 + 17554 24492 11523 11527 17614 17614 -0.020938266631105762 GVACFQGFK 9 Unmodified _GVACFQGFK_ 0 0 0 REV__PMPCA|p.T89A|1|0.32|ENSG00000165688|chr9:136412190-136412190|A/G|missense_variant REV__PMPCA|p.T89A|1|0.32|ENSG00000165688|chr9:136412190-136412190|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73553466796875 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 161.71 1 156.52 156.02 157.02 -5.1878 0 0 0 0.19656 1 31387 31387 0.073264 0.029476 1 + 17555 24492 11523 11527 17615 17615 -0.020938266631105762 GVACPKGKR 9 Unmodified _GVACPKGKR_ 0 0 0 REV__ADAM17|p.T631A|1|0.24|ENSG00000151694|chr2:9494660-9494660|T/C|missense_variant REV__ADAM17|p.T631A|1|0.24|ENSG00000151694|chr2:9494660-9494660|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.76495361328125 2 458.263279 914.512005 0.26844 0.00012302 1.1426 0.0005236 1.411 0.00064661 458.2637698293015 166.76 0.79346 166.76 166.34 167.13 0 33 22 2 0 0 0 0.5464 2 34035 33907;34035 2.0598 0 1 37691000 + 17556 12939 11524 11528 17616;17617 17617 0.05132970839395057 GVACWLKM 8 Unmodified _GVACWLKM_ 0 0 0 REV__SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant REV__SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 303.1551513671875 3 303.155798 906.445565 NaN NaN NaN NaN NaN NaN NaN 8.8314 1 7.767 7.267 8.267 -1.0645 0 0 0 0.21486 1 903 903 0.45834 0 1 + 17557 24728 11525 11529 17618 17618 -0.011399810468788019 GVADVAVVSI 10 Unmodified _GVADVAVVSI_ 0 0 0 REV__nc|ENSG00000134765|Q08554-2|DSC1 REV__nc|ENSG00000134765|Q08554-2|DSC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2398986816406 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 140.2 1 135.25 134.75 135.75 -4.952 0 0 0 0.12859 1 26982 26982 39.957 1.9833 1 + 17558 16226 11526 11530 17619 17619 0.05582651694669494 GVAEFSEYVS 10 Unmodified _GVAEFSEYVS_ 0 0 0 MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.793212890625 2 544.250754 1086.48696 0.33108 0.00018019 -0.051612 -2.809E-05 0.27947 0.0001521 544.2506288065252 124.53 0.53035 124.53 124.19 124.72 0 21 14 2 0 0 0 0.86261 1 24527 24527 10.824 1.4408 1 1987700 17559 5772 11527 11531 17620 17620 -0.05282850272851647 GVAEFSEYVS 10 Unmodified _GVAEFSEYVS_ 0 0 0 MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7965087890625 2 544.250754 1086.48696 0.087649 4.7703E-05 0.26731 0.00014548 0.35495 0.00019318 544.2509997304653 129.57 0.73216 124.75 124.4 125.14 -4.817 34 20 3 0 0 0 0.83242 1 24889 24889 14.838 0 1 2793500 17560 5772 11527 11531 17621 17621 -0.05282850272851647 GVAEGELVQSP 11 Unmodified _GVAEGELVQSP_ 0 0 0 REV__ITGA7|p.R581Qfs*8|1|0.09|ENSG00000135424|chr12:55697026-55697027|-/TT|frameshift_variant REV__ITGA7|p.R581Qfs*8|1|0.09|ENSG00000135424|chr12:55697026-55697027|-/TT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7782592773438 2 543.277303 1084.54005 -0.01943 -1.0556E-05 -1.0877 -0.00059093 -1.1071 -0.00060149 543.2766699394045 45.519 0.80889 42.652 42.154 42.963 -2.8665 57 22 3 0 0 0 0.57511 1 8298 8298 19.362 0.98885 1 5272900 + 17561 16268 11528 11532 17622 17622 0.001165275098173879 GVAENLLEQA 10 Unmodified _GVAENLLEQA_ 0 0 0 REV__nc|ENSG00000135476|Q14674-2|ESPL1 REV__nc|ENSG00000135476|Q14674-2|ESPL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2723388671875 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 25.416 1 25.416 24.916 25.916 0 0 0 0 2.8426 1 4408 4408 0.26539 0 1 + 17562 16272 11529 11533 17623 17623 0.009925448553985916 GVAERAFVEY 10 Unmodified _GVAERAFVEY_ 0 0 0 REV__ENSG00000185176|ENST00000407834|AQP12B REV__ENSG00000185176|ENST00000407834|AQP12B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2131042480469 3 380.860984 1139.56112 -0.22 -8.3788E-05 0.41289 0.00015725 0.19289 7.3464E-05 380.8610234239329 77.946 0.92941 74.483 74.146 75.076 -3.4633 46 25 2 0 0 0 0.75587 1 15306 15306 3.8763 0.28927 1 2338900 + 17563 18946 11530 11534 17624 17624 -0.003074623906513807 GVAERAVHA 9 Unmodified _GVAERAVHA_ 0 0 0 ENST00000435520.5_2_20:25176475-25177782:+|nuORF ENST00000435520.5_2_20:25176475-25177782:+|nuORF ENST00000435520.5_2_20:25176475-25177782:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.247802734375 3 303.834881 908.482814 -0.78379 -0.00023814 0.6775 0.00020585 -0.10629 -3.2294E-05 303.8350303769981 25.609 0.38115 23.756 23.57 23.951 -1.8534 15 10 2 0 0 0 0.884 1 4192 4192 1.1933 0.735 1 494670 17564 9827 11531 11535 17625 17625 0.024911498147503153 GVAERSWLY 9 Unmodified _GVAERSWLY_ 0 0 0 MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1 MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2762451171875 2 540.777274 1079.53999 0.46256 0.00025014 -0.98589 -0.00053315 -0.52333 -0.00028301 540.7768694907782 153.15 1.2956 147.93 147.57 148.87 -5.2209 71 36 3 0 0 0 0.44262 1 29815 29815 23.148 6.2061 1 4727400 17565 3821 11532 11536 17626 17626 0.0034057230047892517 GVAETRPEG 9 Unmodified _GVAETRPEG_ 0 0 0 REV__nc|ENSG00000134278|Q08AE8-2|SPIRE1 REV__nc|ENSG00000134278|Q08AE8-2|SPIRE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.230712890625 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 23.71 1 23.71 23.21 24.21 0 0 0 0 0.19628 1 4056 4056 0.073264 0.029476 1 + 17566 16202 11533 11537 17627 17627 -0.0148856652166387 GVAETRPEG 9 Unmodified _GVAETRPEG_ 0 0 0 REV__nc|ENSG00000134278|Q08AE8-2|SPIRE1 REV__nc|ENSG00000134278|Q08AE8-2|SPIRE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2301025390625 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 139.06 1 134.41 133.91 134.91 -4.6439 0 0 0 0.1963 1 27453 27453 0.073264 0 1 + 17567 16202 11533 11537 17628 17628 -0.0148856652166387 GVAETRPEG 9 Unmodified _GVAETRPEG_ 0 0 0 REV__nc|ENSG00000134278|Q08AE8-2|SPIRE1 REV__nc|ENSG00000134278|Q08AE8-2|SPIRE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.230712890625 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 149.46 1 144.26 143.76 144.76 -5.1994 0 0 0 0.19649 1 28952 28952 0.073264 0.029476 1 + 17568 16202 11533 11537 17629 17629 -0.0148856652166387 GVAFAVVG 8 Unmodified _GVAFAVVG_ 0 0 0 MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1;nc|ENSG00000133895|O00255-3|MEN1 MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20843505859375 2 360.207964 718.401375 NaN NaN NaN NaN NaN NaN NaN 29.775 1 29.775 29.275 30.275 0 0 0 0 0.23294 1 5333 5333 0.063987 0 1 17569 3821 11534 11538 17630 17630 0.030910741228126426 GVAFIKDKVF 10 Unmodified _GVAFIKDKVF_ 0 0 0 REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7 REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2213134765625 3 375.221853 1122.64373 NaN NaN NaN NaN NaN NaN NaN 70.228 1 66.979 66.479 67.479 -3.2492 0 0 0 0.22588 1 13665 13665 2.086 0.49373 1 + 17570 15695 11535 11539 17631 17631 0.08731479408129417 GVAFIKDKVF 10 Unmodified _GVAFIKDKVF_ 0 0 0 REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7 REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2203063964844 3 375.221853 1122.64373 NaN NaN NaN NaN NaN NaN NaN 93.582 1 89.591 89.091 90.091 -3.9907 0 0 0 0.22588 1 18332 18332 3.5871 1.3043 1 + 17571 15695 11535 11539 17632 17632 0.08731479408129417 GVAFIKDKVF 10 Unmodified _GVAFIKDKVF_ 0 0 0 REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7 REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.22039794921875 3 375.221853 1122.64373 NaN NaN NaN NaN NaN NaN NaN 103.5 1 99.285 98.785 99.785 -4.2183 0 0 0 0.22588 1 20351 20351 2.086 0.89267 1 + 17572 15695 11535 11539 17633 17633 0.08731479408129417 GVAFIKDKVF 10 Unmodified _GVAFIKDKVF_ 0 0 0 REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7 REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.22186279296875 3 375.221853 1122.64373 NaN NaN NaN NaN NaN NaN NaN 117.66 1 113.15 112.65 113.65 -4.502 0 0 0 0.22588 1 23192 23192 2.086 0.89267 1 + 17573 15695 11535 11539 17634 17634 0.08731479408129417 GVAFTGAK 8 Unmodified _GVAFTGAK_ 0 0 0 nc|ENSG00000168393|P23919-2|DTYMK;ENSG00000168393|ENST00000305784|DTYMK nc|ENSG00000168393|P23919-2|DTYMK nc|ENSG00000168393|P23919-2|DTYMK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2181701660156 2 375.710871 749.407189 -0.57904 -0.00021755 0.08215 3.0865E-05 -0.49689 -0.00018669 375.7109366069185 59.049 0.59758 55.844 55.468 56.066 -3.2052 26 16 2 0 0 0 0.89646 1 11005 11005 0.0082765 0 1 673620 17574 5902 11536 11540 17635 17635 0.022461726344772615 GVAFVKPSV 9 Unmodified _GVAFVKPSV_ 0 0 0 nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant nc|ENSG00000009413|O60673-2|REV3L nc|ENSG00000009413|O60673-2|REV3L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.0168151855469 3 301.848128 902.522553 NaN NaN NaN NaN NaN NaN NaN 39.667 1 39.667 39.167 40.167 0 0 0 0 0.23508 1 7368 7368 1.0715 0.61312 1 17575 1051 11537 11541 17636 17636 0.06739276765472368 GVAFVTVG 8 Unmodified _GVAFVTVG_ 0 0 0 REV__nc|ENSG00000148288|Q8N5D6-3|GBGT1 REV__nc|ENSG00000148288|Q8N5D6-3|GBGT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21319580078125 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 153.18 1 147.96 147.46 148.46 -5.2209 0 0 0 0.22722 1 29688 29688 0.25148 0 1 + 17576 16966 11538 11542 17637 17637 0.027670567772474897 GVAFYWGR 8 Unmodified _GVAFYWGR_ 0 0 0 REV__ENST00000261191.11_1_12:27091099-27091231:-|nuORF REV__ENST00000261191.11_1_12:27091099-27091231:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7432861328125 2 478.24287 954.471186 -0.07451 -3.5634E-05 -1.0647 -0.00050918 -1.1392 -0.00054481 478.24230768233724 147.6 0.76208 147.6 147.16 147.92 0 36 21 2 0 0 0 0.59519 1 29464 29464 22.453 1.999 1 4731600 + 17577 20167 11539 11543 17638 17638 -0.007870472085755864 GVAGFSLV 8 Unmodified _GVAGFSLV_ 0 0 0 REV__ENST00000501356.5_1_11:94883767-94884067:+|nuORF REV__ENST00000501356.5_1_11:94883767-94884067:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2119140625 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 90.062 1 86.284 85.784 86.784 -3.7779 0 0 0 0.23711 1 17234 17234 0.0082765 0 1 + 17578 22430 11540 11544 17639 17639 0.02767056777236121 GVAGGGGD 8 Unmodified _GVAGGGGD_ 0 0 0 REV__ENST00000337400.6_1_6:35310417-35365329:+|nuORF REV__ENST00000337400.6_1_6:35310417-35365329:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2479248046875 1 589.257631 588.250354 0.35872 0.00021138 -3.5542 -0.0020943 -3.1955 -0.0018829 589.2578738700728 111.15 0.20934 111.15 111.03 111.24 0 7 5 2 0 0 0 0.76728 1 21856 21856 5.7604 0 1 873550 + 17579 20675 11541 11545 17640 17640 -0.060241122558522875 GVAGGGGD 8 Unmodified _GVAGGGGD_ 0 0 0 REV__ENST00000337400.6_1_6:35310417-35365329:+|nuORF REV__ENST00000337400.6_1_6:35310417-35365329:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 589.257631 588.250354 0.35872 0.00021138 -3.5542 -0.0020943 -3.1955 -0.0018829 589.2578738700728 111.15 0.20934 111.15 111.03 111.24 0 0 0 NaN 5.7604 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 873550 + 17580 20675 11541 11545 -0.060241122558522875 GVAGMRGEP 9 Unmodified _GVAGMRGEP_ 0 0 0 ENSG00000197565|ENST00000334504|COL4A6;nc|ENSG00000197565|Q14031|COL4A6 ENSG00000197565|ENST00000334504|COL4A6 ENSG00000197565|ENST00000334504|COL4A6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2165832519531 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 129.11 1 124.3 123.8 124.8 -4.817 0 0 0 0.23508 1 24785 24785 8.5933 2.2392 1 17581 7380 11542 11546 17641 17641 -0.023875877025943737 GVAGTTTL 8 Unmodified _GVAGTTTL_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 115.56 1 115.56 115.06 116.06 0 0 0 0 0.21486 1 22745 22745 2.5775 1.7838 1 17582 7651 11543 11547 17642 17642 0.015661625349594033 GVAHGPRGP 9 Unmodified _GVAHGPRGP_ 0 0 0 ENSG00000105364|ENST00000253099|MRPL4;nc|ENSG00000105364|Q9BYD3-2|MRPL4 ENSG00000105364|ENST00000253099|MRPL4 ENSG00000105364|ENST00000253099|MRPL4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2483825683594 2 424.230294 846.446034 -1.4428 -0.00061209 0.3902 0.00016554 -1.0526 -0.00044655 424.23047051823403 18.456 0.30832 16.942 16.746 17.054 -1.5148 16 8 3 0 0 0 0.72255 1 2712 2712 5.2307 2.3415 1 662000 17583 2301 11544 11548 17643 17643 0.016668979888436297 GVAHRRGP 8 Unmodified _GVAHRRGP_ 0 0 0 ENST00000548421.2_1_14:105767313-105767607:-|nuORF ENST00000548421.2_1_14:105767313-105767607:-|nuORF ENST00000548421.2_1_14:105767313-105767607:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2431640625 2 425.243735 848.472918 NaN NaN NaN NaN NaN NaN NaN 162.75 1 157.56 157.06 158.06 -5.1878 0 0 0 0.21486 1 31618 31618 2.8892 1.045 1 17584 11150 11545 11549 17644 17644 0.04262006600049517 GVAHRRGP 8 Unmodified _GVAHRRGP_ 0 0 0 ENST00000548421.2_1_14:105767313-105767607:-|nuORF ENST00000548421.2_1_14:105767313-105767607:-|nuORF ENST00000548421.2_1_14:105767313-105767607:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24359130859375 2 425.243735 848.472918 NaN NaN NaN NaN NaN NaN NaN 171.48 1 166.6 166.1 167.1 -4.873 0 0 0 0.21486 1 33986 33986 2.8892 0 1 17585 11150 11545 11549 17645 17645 0.04262006600049517 GVAHVLLIW 9 Unmodified _GVAHVLLIW_ 0 0 0 HPS6|p.N559Mfs*54|2|0.39|ENSG00000166189|chr10:102067143-102067143|C/-|frameshift_variant;HPS6|p.L690Pfs*14|1|0.6|ENSG00000166189|chr10:102067537-102067538|-/C|frameshift_variant;HPS6|p.P730Lfs*25|1|0.3|ENSG00000166189|chr10:102067659-102067659|C/-|frameshift_variant;ENSG00000166189|ENST00000299238|HPS6 HPS6|p.N559Mfs*54|2|0.39|ENSG00000166189|chr10:102067143-102067143|C/-|frameshift_variant HPS6|p.N559Mfs*54|2|0.39|ENSG00000166189|chr10:102067143-102067143|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.5190734863281 3 336.539405 1006.59639 NaN NaN NaN NaN NaN NaN NaN 24.165 1 22.612 22.112 23.112 -1.5532 0 0 0 0.1964 1 4199 4199 0.40827 0 1 17586 5699 11546 11550 17646 17646 0.09335244927797248 GVAIRHVQSMY 11 Unmodified _GVAIRHVQSMY_ 0 0 0 TSPAN2|p.T122S|1|0.19|ENSG00000134198|chr1:115058962-115058962|G/C|missense_variant TSPAN2|p.T122S|1|0.19|ENSG00000134198|chr1:115058962-115058962|G/C|missense_variant TSPAN2|p.T122S|1|0.19|ENSG00000134198|chr1:115058962-115058962|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7657470703125 2 630.829514 1259.64448 NaN NaN NaN NaN NaN NaN NaN 95.936 1 92.055 91.555 92.555 -3.881 0 0 0 0.22632 1 18411 18411 0.172 0 1 17587 26531 11547 11551 17647 17647 0.025039507855581178 GVAKNKAY 8 Unmodified _GVAKNKAY_ 0 0 0 REV__ENSG00000164024|ENST00000296411|METAP1 REV__ENSG00000164024|ENST00000296411|METAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2506103515625 2 425.742702 849.470852 0.31224 0.00013293 -0.041326 -1.7594E-05 0.27091 0.00011534 425.7426434626307 30.5 0.59722 28.383 28.048 28.645 -2.1167 36 16 3 0 0 0 0.89926 1 5565 5565 1.3295 0 1 1897500 + 17588 17636 11548 11552 17648 17648 0.04009533071553051 GVAKRKTKAK 10 Unmodified _GVAKRKTKAK_ 0 0 0 nc|ENSG00000198363|Q12797-4|ASPH;nc|ENSG00000198363|Q12797-3|ASPH nc|ENSG00000198363|Q12797-4|ASPH nc|ENSG00000198363|Q12797-4|ASPH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7943725585938 2 543.858932 1085.70331 NaN NaN NaN NaN NaN NaN NaN 119.1 1 114.45 113.95 114.95 -4.645 0 0 0 0.22588 1 22852 22852 1.8442 0.19162 1 17589 12549 11549 11553 17649 17649 0.16388795142142953 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16107177734375 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 20.304 1 20.304 19.804 20.804 0 0 0 0 0.21486 1 3355 3355 1.6526 0.45928 1 17590 3168 11550 11554 17650 17650 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 23.584 1 23.584 23.084 24.084 0 0 0 0 0.21486 1 4028 4028 4.3292 2.485 1 17591 3168 11550 11554 17651 17651 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 37.345 1 37.345 36.845 37.845 0 0 0 0 0.21486 1 6904 6904 6.7232 3.1267 1 17592 3168 11550 11554 17652 17652 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1703796386719 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 38.014 1 38.014 37.514 38.514 0 0 0 0 0.21486 1 7041 7041 10.824 3.5347 1 17593 3168 11550 11554 17653 17653 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.164306640625 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 39.657 1 39.657 39.157 40.157 0 0 0 0 0.21486 1 7365 7365 6.7232 2.7788 1 17594 3168 11550 11554 17654 17654 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1701354980469 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 41.739 1 41.739 41.239 42.239 0 0 0 0 0.21486 1 7792 7792 6.7232 3.1267 1 17595 3168 11550 11554 17655 17655 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.169921875 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 44.398 1 44.398 43.898 44.898 0 0 0 0 0.21486 1 8329 8329 6.7232 3.1267 1 17596 3168 11550 11554 17656 17656 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700439453125 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 53.848 1 53.848 53.348 54.348 0 0 0 0 0.21486 1 10261 10261 1.8442 1.0677 1 17597 3168 11550 11554 17657 17657 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.169921875 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 56.293 1 56.293 55.793 56.793 0 0 0 0 0.21486 1 10748 10748 1.8442 0.6509 1 17598 3168 11550 11554 17658 17658 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647644042969 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 56.85 1 56.85 56.35 57.35 0 0 0 0 0.21486 1 10860 10860 1.6526 0.45928 1 17599 3168 11550 11554 17659 17659 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16961669921875 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 59.36 1 59.36 58.86 59.86 0 0 0 0 0.21486 1 11371 11371 1.6526 0.45928 1 17600 3168 11550 11554 17660 17660 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1699523925781 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 99.276 1 95.007 94.507 95.507 -4.2692 0 0 0 0.21486 1 18977 18977 1.6526 0.45928 1 17601 3168 11550 11554 17661 17661 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1703186035156 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 109.02 1 104.57 104.07 105.07 -4.4518 0 0 0 0.21486 1 20924 20924 1.8442 0.6509 1 17602 3168 11550 11554 17662 17662 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1721496582031 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 99.613 1 95.656 95.156 96.156 -3.9564 0 0 0 0.21486 1 19128 19128 1.6526 0.45928 1 17603 3168 11550 11554 17663 17663 0.022165320020576473 GVALFMYK 8 Unmodified _GVALFMYK_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508926.1_1_17:47782482-47783697:-|nuORF;ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.170166015625 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 100.65 1 96.664 96.164 97.164 -3.9895 0 0 0 0.21486 1 19339 19339 1.6526 0.58116 1 17604 3168 11550 11554 17664 17664 0.022165320020576473 GVALFSGV 8 Unmodified _GVALFSGV_ 0 0 0 REV__ENST00000502389.1_1_4:39184171-39196284:+|nuORF REV__ENST00000502389.1_1_4:39184171-39196284:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2145690917969 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 40.484 1 37.85 37.35 38.35 -2.6348 0 0 0 0.23711 1 7546 7546 0.0082765 0 1 + 17605 17309 11551 11555 17665 17665 0.027670567772474897 GVALKATEEY 10 Unmodified _GVALKATEEY_ 0 0 0 REV__nc|ENSG00000164050|O43157-2|PLXNB1 REV__nc|ENSG00000164050|O43157-2|PLXNB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2650756835938 2 540.782222 1079.54989 0.22342 0.00012082 0.44867 0.00024263 0.67209 0.00036345 541.2819983880906 152.16 0.22093 146.93 146.81 147.03 -5.2365 6 5 2 0 0 0 0.48849 1 29512 29512 0.26539 0 1 920930 + 17606 17641 11552 11556 17666 17666 0.013297155152031337 GVALVGAY 8 Unmodified _GVALVGAY_ 0 0 0 REV__ENSG00000175283|ENST00000372586|DOLK;REV__DOLK|p.V439I|1|0.27|ENSG00000175283|chr9:128945989-128945989|C/T|missense_variant REV__DOLK|p.V439I|1|0.27|ENSG00000175283|chr9:128945989-128945989|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2124328613281 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 92.704 1 88.56 88.06 89.06 -4.1435 0 0 0 0.21486 1 17663 17663 6.3541 3.4649 1 + 17607 18468;13742 11553 11557 17667 17667 0.02767056777236121 GVAMVKFMY 9 Unmodified _GVAMVKFMY_ 0 0 0 tr|U7SGR2|U7SGR2_FUSNUXaa-ProaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02289PE=3SV=1 tr|U7SGR2|U7SGR2_FUSNUXaa-ProaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02289PE=3SV=1 tr|U7SGR2|U7SGR2_FUSNUXaa-ProaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02289PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.68310546875 2 523.264099 1044.51364 0.28628 0.0001498 -1.4587 -0.00076327 -1.1724 -0.00061347 523.263493990791 137.04 0.62349 132.2 131.97 132.59 -4.84 28 17 2 0 0 0 0.8204 1 26450 26450 13.508 9.1786 1 2487600 17608 25904 11554 11558 17668 17668 -0.006831561868693825 GVANLESIA 9 Unmodified _GVANLESIA_ 0 0 0 REV__tr|U7T0X8|U7T0X8_FUSNUDUF554domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00731PE=4SV=1 REV__tr|U7T0X8|U7T0X8_FUSNUDUF554domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00731PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22802734375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 102.1 1 102.1 101.6 102.6 0 0 0 0 0.19679 1 20052 20052 1.2148 0.94944 1 + 17609 25283 11555 11559 17669 17669 0.01901505626483413 GVANLESIA 9 Unmodified _GVANLESIA_ 0 0 0 REV__tr|U7T0X8|U7T0X8_FUSNUDUF554domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00731PE=4SV=1 REV__tr|U7T0X8|U7T0X8_FUSNUDUF554domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00731PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21624755859375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 76.726 1 73.092 72.592 73.592 -3.6337 0 0 0 0.23508 1 14607 14607 8.5933 2.8329 1 + 17610 25283 11555 11559 17670 17670 0.01901505626483413 GVANPYRP 8 Unmodified _GVANPYRP_ 0 0 0 REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;REV__CHD7-TCF7L2|9|fusion REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2336120605469 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 107.72 1 107.72 107.22 108.22 0 0 0 0 0.21486 1 21181 21181 9.3474 0.75416 1 + 17611 13404;13403 11556 11560 17671 17671 0.009123624117592044 GVAPQAKMNQ 10 Unmodified _GVAPQAKMNQ_ 0 0 0 XRN1|p.R91Q|1|0.4|ENSG00000114127|chr3:142432697-142432697|C/T|missense_variant XRN1|p.R91Q|1|0.4|ENSG00000114127|chr3:142432697-142432697|C/T|missense_variant XRN1|p.R91Q|1|0.4|ENSG00000114127|chr3:142432697-142432697|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2666625976562 2 522.268758 1042.52296 0.14242 7.4379E-05 0.12801 6.6858E-05 0.27043 0.00014124 522.2685726963626 18.087 0.42372 18.087 17.878 18.302 0 23 11 3 0 0 0 0.5179 1 2868 2868 0.84494 0 1 3962000 17612 26586 11557 11561 17672 17672 0.003403284230216741 GVAPRLLRIR 10 Unmodified _GVAPRLLRIR_ 0 0 0 REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3223876953125 2 575.880199 1149.74584 0.04329 2.493E-05 -2.2247 -0.0012812 -2.1814 -0.0012562 575.8782462703685 141.15 0.27782 136.5 136.3 136.58 -4.6493 9 7 2 0 0 0 0.91149 1 27872 27872 1.8442 1.2427 1 1290400 + 17613 17511 11558 11562 17673 17673 0.1769619027038516 GVAPTLEE 8 Unmodified _GVAPTLEE_ 0 0 0 tr|U7SYU1|U7SYU1_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00934PE=4SV=1 tr|U7SYU1|U7SYU1_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00934PE=4SV=1 tr|U7SYU1|U7SYU1_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00934PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 408.2124328613281 2 408.210901 814.407249 NaN NaN NaN NaN NaN NaN NaN 96.778 1 92.859 92.359 93.359 -3.9194 0 0 0 0.21486 1 18574 18574 5.7604 0 1 17614 26284 11559 11563 17674 17674 -0.007378721561849488 GVAQEPVHLDS 11 Unmodified _GVAQEPVHLDS_ 0 0 0 A1BG|p.G132Afs*2|1|0.27|ENSG00000121410|chr19:58352503-58352503|G/-|frameshift_variant;ENSG00000121410|ENST00000263100|A1BG A1BG|p.G132Afs*2|1|0.27|ENSG00000121410|chr19:58352503-58352503|G/-|frameshift_variant A1BG|p.G132Afs*2|1|0.27|ENSG00000121410|chr19:58352503-58352503|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3283081054688 2 576.288202 1150.56185 NaN NaN NaN NaN NaN NaN NaN 170.51 1 165.59 165.09 166.09 -4.9149 0 0 0 0.22943 1 33716 33716 8.7454 0.58988 1 17615 0 11560 11564 17675 17675 -0.0074066774163839 GVARIKPAVIK 11 Unmodified _GVARIKPAVIK_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3368530273438 2 576.384783 1150.75501 NaN NaN NaN NaN NaN NaN NaN 138.1 1 133.46 132.96 133.96 -4.6413 0 0 0 0.23698 1 27260 27260 1.4819 0.15237 1 17616 1572 11561 11565 17676 17676 0.1856653883605759 GVARRKKR 8 Unmodified _GVARRKKR_ 0 0 0 REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.18048095703125 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 57.684 1 57.684 57.184 58.184 0 0 0 0 0.21486 1 11033 11033 0.45834 0.057624 1 + 17617 19102 11562 11566 17677 17677 0.14478505859267443 GVARRKKR 8 Unmodified _GVARRKKR_ 0 0 0 REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.2020263671875 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 71.254 1 71.254 70.754 71.754 0 0 0 0 0.21486 1 13803 13803 0.45834 0.18932 1 + 17618 19102 11562 11566 17678 17678 0.14478505859267443 GVARRKKR 8 Unmodified _GVARRKKR_ 0 0 0 REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.2017822265625 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 72.272 1 72.272 71.772 72.772 0 0 0 0 0.21486 1 14010 14010 0.45834 0.18932 1 + 17619 19102 11562 11566 17679 17679 0.14478505859267443 GVARRKKR 8 Unmodified _GVARRKKR_ 0 0 0 REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1578063964844 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 75.528 1 71.805 71.305 72.305 -3.7227 0 0 0 0.21486 1 14288 14288 0.45834 0.18932 1 + 17620 19102 11562 11566 17680 17680 0.14478505859267443 GVARRKKR 8 Unmodified _GVARRKKR_ 0 0 0 REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.2016296386719 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 75.592 1 71.869 71.369 72.369 -3.7227 0 0 0 0.21486 1 14301 14301 0.45834 0.18932 1 + 17621 19102 11562 11566 17681 17681 0.14478505859267443 GVARRKKR 8 Unmodified _GVARRKKR_ 0 0 0 REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.2370910644531 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 12.807 1 11.686 11.186 12.186 -1.1206 0 0 0 0.21486 1 1560 1560 0.45834 0.18932 1 + 17622 19102 11562 11566 17682 17682 0.14478505859267443 GVARRKKR 8 Unmodified _GVARRKKR_ 0 0 0 REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.15032958984375 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 21.346 1 19.625 19.125 20.125 -1.7211 0 0 0 0.2396 1 3334 3334 0 0 1 + 17623 19102 11562 11566 17683 17683 0.14478505859267443 GVARRKKR 8 Unmodified _GVARRKKR_ 0 0 0 REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1943054199219 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 29.233 1 27.236 26.736 27.736 -1.9962 0 0 0 0.2396 1 4964 4964 0 0 1 + 17624 19102 11562 11566 17684 17684 0.14478505859267443 GVARRKKR 8 Unmodified _GVARRKKR_ 0 0 0 REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.5117492675781 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 30.53 1 28.456 27.956 28.956 -2.0743 0 0 0 0.2396 1 5232 5232 0 0 1 + 17625 19102 11562 11566 17685 17685 0.14478505859267443 GVARRKKT 8 Unmodified _GVARRKKT_ 0 0 0 REV__ENST00000406438.4_1_17:18218648-18218918:+|nuORF REV__ENST00000406438.4_1_17:18218648-18218918:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.24212646484375 2 458.295968 914.577383 NaN NaN NaN NaN NaN NaN NaN 90.859 1 90.859 90.359 91.359 0 0 0 0 0.21486 1 17754 17754 2.8892 0 1 + 17626 21389 11563 11567 17686 17686 0.11667708356753792 GVARYGVK 8 Unmodified _GVARYGVK_ 0 0 0 nc|ENSG00000148218|P13716-2|ALAD;ENST00000482847.5_1_9:116150582-116155760:-|nuORF;ENST00000468504.5_1_9:116152961-116155869:-|nuORF;ENSG00000148218|ENST00000409155|ALAD nc|ENSG00000148218|P13716-2|ALAD;ENST00000468504.5_1_9:116152961-116155869:-|nuORF ENST00000468504.5_1_9:116152961-116155869:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2511901855469 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 162.27 1 157.08 156.58 157.58 -5.1878 0 0 0 0.23749 1 31503 31503 0.12286 0 1 17627 10405;4734 11564 11568 17687 17687 0.056532393084808064 GVASGHLPRKG 11 Unmodified _GVASGHLPRKG_ 0 0 0 ENSG00000119411|ENST00000374183|BSPRY ENSG00000119411|ENST00000374183|BSPRY ENSG00000119411|ENST00000374183|BSPRY MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2098693847656 3 360.208718 1077.60433 NaN NaN NaN NaN NaN NaN NaN 88.232 1 84.44 83.94 84.94 -3.7926 0 0 0 0.22632 1 17257 17257 0.172 0 1 17628 3077 11565 11569 17688 17688 0.0686277217728275 GVATGILMGIY 11 Unmodified _GVATGILMGIY_ 0 0 0 REV__nc|ENSG00000196950|Q9ULF5-2|SLC39A10 REV__nc|ENSG00000196950|Q9ULF5-2|SLC39A10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.778076171875 2 547.79936 1093.58417 NaN NaN NaN NaN NaN NaN NaN 72.1 1 68.472 67.972 68.972 -3.6275 0 0 0 0.23199 1 13609 13609 6.7232 0.51738 1 + 17629 19290 11566 11570 17689 17689 0.041118404024700794 GVATMKKG 8 Unmodified _GVATMKKG_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 396.5017395019531 2 396.225831 790.437109 NaN NaN NaN NaN NaN NaN NaN 31.855 1 31.855 31.355 32.355 0 0 0 0 0.23749 1 5767 5767 0.12286 0.12286 1 17630 1872 11567 11571 17690 17690 0.033507883081597356 GVATPDLPAS 10 Unmodified _GVATPDLPAS_ 0 0 0 ENST00000456324.5_1_19:36705694-36705913:+|nuORF ENST00000456324.5_1_19:36705694-36705913:+|nuORF ENST00000456324.5_1_19:36705694-36705913:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 464.1146240234375 2 464.242732 926.470912 -0.027907 -1.2955E-05 -0.071114 -3.3014E-05 -0.09902 -4.5969E-05 464.2426595931641 39.752 0.98164 37.212 36.587 37.569 -2.5398 46 27 2 0 0 0 0.871 1 7139 7139 10.074 0.6908 1 1279400 17631 10026 11568 11572 17691 17691 0.0047348828089752715 GVATPDLPAS 10 Unmodified _GVATPDLPAS_ 0 0 0 ENST00000456324.5_1_19:36705694-36705913:+|nuORF ENST00000456324.5_1_19:36705694-36705913:+|nuORF ENST00000456324.5_1_19:36705694-36705913:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.242732 926.470912 0.21518 9.9896E-05 -0.33861 -0.0001572 -0.12343 -5.7301E-05 464.24256334916373 37.197 0.7998 37.197 36.743 37.542 0 -0.032782 -0.00020522 NaN 10.074 40 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1179300 17632 10026 11568 11572 0.0047348828089752715 GVATPDLPAS 10 Unmodified _GVATPDLPAS_ 0 0 0 ENST00000456324.5_1_19:36705694-36705913:+|nuORF ENST00000456324.5_1_19:36705694-36705913:+|nuORF ENST00000456324.5_1_19:36705694-36705913:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.242732 926.470912 -0.3337 -0.00015492 0.26994 0.00012532 -0.063769 -2.9604E-05 464.24283620106365 39.716 1.0605 37.167 36.681 37.741 -2.5491 -0.062898 0.00035981 NaN 10.074 50 29 2 NaN NaN NaN NaN 0 NaN NaN 0 963840 17633 10026 11568 11572 0.0047348828089752715 GVATPDLPAS 10 Unmodified _GVATPDLPAS_ 0 0 0 ENST00000456324.5_1_19:36705694-36705913:+|nuORF ENST00000456324.5_1_19:36705694-36705913:+|nuORF ENST00000456324.5_1_19:36705694-36705913:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.242732 926.470912 0.13041 6.054E-05 -0.28705 -0.00013326 -0.15665 -7.2722E-05 464.24264965129225 39.748 0.90496 37.343 36.723 37.628 -2.4049 0.11343 -0.00015735 NaN 10.074 43 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1056200 17634 10026 11568 11572 0.0047348828089752715 GVAVGVAF 8 Unmodified _GVAVGVAF_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2;LRP2|p.E535Gfs*3|1|0.12|ENSG00000081479|chr2:169277913-169277914|-/C|frameshift_variant;SLC26A9|p.T608Pfs*62|1|0.36|ENSG00000174502|chr1:205921800-205921800|G/-|frameshift_variant;ENSG00000174502|ENST00000367135|SLC26A9;nc|ENSG00000174502|Q7LBE3-2|SLC26A9;LRP2|p.S714Hfs*51|1|0.34|ENSG00000081479|chr2:169271084-169271084|A/-|frameshift_variant ENSG00000081479|ENST00000649046|LRP2;LRP2|p.S714Hfs*51|1|0.34|ENSG00000081479|chr2:169271084-169271084|A/-|frameshift_variant ENSG00000081479|ENST00000649046|LRP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2074279785156 2 360.207964 718.401375 NaN NaN NaN NaN NaN NaN NaN 110.23 1 106.05 105.55 106.55 -4.1826 0 0 0 0.21486 1 21213 21213 6.3541 0 1 17635 1627;12086 11569 11573 17692 17692 0.03091074122801274 GVAVHFAVCY 10 Unmodified _GVAVHFAVCY_ 0 0 0 ENSG00000219607|ENST00000405617|PPP1R3G;PPP1R3G|p.R321C|1|0.85|ENSG00000219607|chr6:5086446-5086446|C/T|missense_variant ENSG00000219607|ENST00000405617|PPP1R3G ENSG00000219607|ENST00000405617|PPP1R3G MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2626342773438 2 533.262945 1064.51134 NaN NaN NaN NaN NaN NaN NaN 163 1 157.81 157.31 158.31 -5.1878 0 0 0 0.22588 1 31684 31684 7.9102 0.62092 1 17636 7758 11570 11574 17693 17693 -0.018338686003289695 GVAVPFYP 8 Unmodified _GVAVPFYP_ 0 0 0 REV__nc|ENSG00000116785|Q02985-2|CFHR3 REV__nc|ENSG00000116785|Q02985-2|CFHR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2450256347656 2 425.228897 848.44324 NaN NaN NaN NaN NaN NaN NaN 89.614 1 85.754 85.254 86.254 -3.8595 0 0 0 0.23711 1 17533 17533 0.12286 0.11459 1 + 17637 13390 11571 11575 17694 17694 0.01295629811318122 GVAVSYGLY 9 Unmodified _GVAVSYGLY_ 0 0 0 REV__nc|ENSG00000138448|P06756-3|ITGAV;REV__ENSG00000161638|ENST00000293379|ITGA5 REV__nc|ENSG00000138448|P06756-3|ITGAV MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1696472167969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.251 1 74.251 73.751 74.751 0 0 0 0 0.23508 1 14413 14413 2.7352 1.0826 1 + 17638 16464;17460 11572 11576 17695 17695 0.00354693631857117 GVAWLAYTV 9 Unmodified _GVAWLAYTV_ 0 0 0 REV__DNAJC22|p.P75Lfs*2|1|0.33|ENSG00000178401|chr12:49349092-49349092|C/-|frameshift_variant REV__DNAJC22|p.P75Lfs*2|1|0.33|ENSG00000178401|chr12:49349092-49349092|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26287841796875 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 113.41 1 109.14 108.64 109.64 -4.2725 0 0 0 0.23411 1 21840 21840 13.508 2.3934 1 + 17639 13725 11573 11577 17696 17696 0.027349729028514957 GVAWLFGDP 9 Unmodified _GVAWLFGDP_ 0 0 0 REV__KL|p.K436Sfs*7|1|0.3|ENSG00000133116|chr13:33054250-33054250|A/-|frameshift_variant REV__KL|p.K436Sfs*7|1|0.3|ENSG00000133116|chr13:33054250-33054250|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24365234375 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 31.108 1 28.991 28.491 29.491 -2.1167 0 0 0 0.21848 1 5637 5637 18.135 3.5533 1 + 17640 16157 11574 11578 17697 17697 -0.011298866482775338 GVCAFRLPRVP 11 Unmodified _GVCAFRLPRVP_ 0 0 0 REV__nc|ENSG00000133619|A5PL33-3|KRBA1 REV__nc|ENSG00000133619|A5PL33-3|KRBA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.3121337890625 3 405.565737 1213.67538 NaN NaN NaN NaN NaN NaN NaN 127.67 1 122.97 122.47 123.47 -4.6998 0 0 0 0.23698 1 24562 24562 0.50596 0.23694 1 + 17641 16171 11575 11579 17698 17698 0.07709148890421602 GVCAHFPA 8 Unmodified _GVCAHFPA_ 0 0 0 DNHD1|p.R1358Afs*11|1|0.16|ENSG00000179532|chr11:6545007-6545007|C/-|frameshift_variant DNHD1|p.R1358Afs*11|1|0.16|ENSG00000179532|chr11:6545007-6545007|C/-|frameshift_variant DNHD1|p.R1358Afs*11|1|0.16|ENSG00000179532|chr11:6545007-6545007|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 401.5232238769531 2 401.189248 800.363944 NaN NaN NaN NaN NaN NaN NaN 12.784 1 12.784 12.284 13.284 0 0 0 0 0.2396 1 1804 1804 0 0 1 17642 877 11576 11580 17699 17699 -0.04422340414464543 GVCAVPVS 8 Unmodified _GVCAVPVS_ 0 0 0 REV__ENST00000269228.9_1_18:21131592-21131649:-|nuORF REV__ENST00000269228.9_1_18:21131592-21131649:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.19720458984375 2 366.191457 730.368361 NaN NaN NaN NaN NaN NaN NaN 91.408 1 87.483 86.983 87.983 -3.9251 0 0 0 0.21486 1 17893 17893 10.183 4.423 1 + 17643 20264 11577 11581 17700 17700 -0.007608759915456176 GVCDEACSMQH 11 Unmodified _GVCDEACSMQH_ 0 0 0 ENSG00000130768|ENST00000373894|SMPDL3B;ENST00000548116.5_1_1:28271947-28285346:+|nuORF ENSG00000130768|ENST00000373894|SMPDL3B ENSG00000130768|ENST00000373894|SMPDL3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.26123046875 2 590.215008 1178.41546 0.4308 0.00025427 2.0039 0.0011827 2.4347 0.001437 590.7172761934246 157.74 0.25388 152.47 152.36 152.62 -5.2712 9 6 2 0 0 0 0.66082 1 30619 30619 0.00056442 0 1 1209600 17644 3635 11578 11582 17701 17701 -0.16660752565030634 GVCDGSPC 8 Unmodified _GVCDGSPC_ 0 0 0 REV__THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|67|2|anti-sense REV__THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|67|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 369.1391906738281 2 369.133282 736.25201 NaN NaN NaN NaN NaN NaN NaN 55.502 1 52.364 51.864 52.864 -3.1377 0 0 0 0.2396 1 10305 10305 0 0 1 + 17645 24796 11579 11583 17702 17702 -0.12666562553772565 GVCDHSFG 8 Unmodified _GVCDHSFG_ 0 0 0 REV__ENST00000435030.1_2:149880865-149881021:+|nuORF REV__ENST00000435030.1_2:149880865-149881021:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.1764221191406 2 411.16597 820.317388 NaN NaN NaN NaN NaN NaN NaN 60.563 1 60.563 60.063 61.063 0 0 0 0 0.21486 1 11612 11612 2.5775 0.51773 1 + 17646 21655 11580 11584 17703 17703 -0.09995825036401129 GVCGSCGGC 9 Unmodified _GVCGSCGGC_ 0 0 0 ENSG00000196224|ENST00000399685|KRTAP5-3 ENSG00000196224|ENST00000399685|KRTAP5-3 ENSG00000196224|ENST00000399685|KRTAP5-3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3914184570312 1 742.231692 741.224415 0.89599 0.00066503 2.4807 0.0018412 3.3767 0.0025063 742.2370291710199 170.36 0.16756 165.57 165.49 165.66 -4.7898 5 4 2 0 0 0 0.88433 1 34575 34575 0.6015 0 1 5077800 17647 7247 11581 11585 17704 17704 -0.1565478908564728 GVCIHPRF 8 Unmodified _GVCIHPRF_ 0 0 0 ENSG00000132763|ENST00000401061|MMACHC ENSG00000132763|ENST00000401061|MMACHC ENSG00000132763|ENST00000401061|MMACHC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 70.009 1 66.829 66.329 67.329 -3.1796 0 0 0 0.21486 1 13619 13619 7.2892 1.5574 1 17648 3761 11582 11586 17705 17705 0.008252992936263581 GVCIHPRF 8 Unmodified _GVCIHPRF_ 0 0 0 ENSG00000132763|ENST00000401061|MMACHC ENSG00000132763|ENST00000401061|MMACHC ENSG00000132763|ENST00000401061|MMACHC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1679382324219 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 70.421 1 67.172 66.672 67.672 -3.2492 0 0 0 0.23664 1 13702 13702 3.2813 0 1 17649 3761 11582 11586 17706 17706 0.008252992936263581 GVCKAVGK 8 Unmodified _GVCKAVGK_ 0 0 0 VLDLR|p.P558Wfs*8|1|0.03|ENSG00000147852|chr9:2646519-2646520|-/ATGGACTTTTT|frameshift_variant;nc|ENSG00000147852|P98155-2|VLDLR;ENSG00000147852|ENST00000382100|VLDLR;VLDLR|p.A430V|1|0.31|ENSG00000147852|chr9:2645059-2645059|C/T|missense_variant VLDLR|p.P558Wfs*8|1|0.03|ENSG00000147852|chr9:2646519-2646520|-/ATGGACTTTTT|frameshift_variant VLDLR|p.P558Wfs*8|1|0.03|ENSG00000147852|chr9:2646519-2646520|-/ATGGACTTTTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2198791503906 2 381.220549 760.426544 NaN NaN NaN NaN NaN NaN NaN 14.891 1 13.681 13.181 14.181 -1.2106 0 0 0 0.21486 1 2012 2012 0.79363 0 1 17650 4718 11583 11587 17707 17707 0.036748056537248885 GVCMRFPC 8 Unmodified _GVCMRFPC_ 0 0 0 ENST00000376350.7_2_19:55715404-55716852:-|nuORF ENST00000376350.7_2_19:55715404-55716852:-|nuORF ENST00000376350.7_2_19:55715404-55716852:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.0130310058594 3 304.801138 911.381585 -0.47176 -0.00014379 0.54815 0.00016708 0.076386 2.3283E-05 304.8013024827254 32.187 0.62878 32.187 31.978 32.607 0 25 17 2 0 0 0 1.0281 1 5929 5929 0.45834 0.45834 1 806940 17651 9247 11584 11588 17708 17708 -0.07765084475477124 GVCMRFPC 8 Unmodified _GVCMRFPC_ 0 0 0 ENST00000376350.7_2_19:55715404-55716852:-|nuORF ENST00000376350.7_2_19:55715404-55716852:-|nuORF ENST00000376350.7_2_19:55715404-55716852:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 304.801138 911.381585 -0.43907 -0.00013383 1.1302 0.00034447 0.69108 0.00021064 304.8013737368634 34.478 0.44965 32.16 32.015 32.464 -2.3175 -0.050632 0.00042218 NaN 0.45834 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 511390 17652 9247 11584 11588 -0.07765084475477124 GVCMRFPC 8 Unmodified _GVCMRFPC_ 0 0 0 ENST00000376350.7_2_19:55715404-55716852:-|nuORF ENST00000376350.7_2_19:55715404-55716852:-|nuORF ENST00000376350.7_2_19:55715404-55716852:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 304.801138 911.381585 -0.32922 -0.00010035 0.49042 0.00014948 0.16121 4.9135E-05 304.8012527039942 34.502 0.4593 32.286 32.122 32.581 -2.2158 0.074858 -0.00016279 NaN 0.45834 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 591890 17653 9247 11584 11588 -0.07765084475477124 GVCNKYWK 8 Unmodified _GVCNKYWK_ 0 0 0 ENSG00000233802|ENST00000623787|TRIM49D2;ENSG00000223417|ENST00000420869|TRIM49D1 ENSG00000233802|ENST00000623787|TRIM49D2 ENSG00000233802|ENST00000623787|TRIM49D2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.1694641113281 3 333.168984 996.485122 NaN NaN NaN NaN NaN NaN NaN 80.141 1 80.141 79.641 80.641 0 0 0 0 0.21486 1 15602 15602 3.9444 1.4459 1 17654 7772 11585 11589 17709 17709 -0.013261377718094991 GVCRCCSS 8 Unmodified _GVCRCCSS_ 0 0 0 ENST00000428275.1_1_X:53172253-53172460:-|nuORF ENST00000428275.1_1_X:53172253-53172460:-|nuORF ENST00000428275.1_1_X:53172253-53172460:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.354248046875 1 814.30044 813.293164 0.49378 0.00040208 -0.2094 -0.00017052 0.28437 0.00023157 814.2949487308389 174.26 0.10814 174.26 174.17 174.27 0 4 2 2 0 0 0 8448 2 36050 36050;36060 0 0 1 3987400 17655 9748 11586 11590 17710;17711 17710 -0.1209512478594661 GVCRKTKK 8 Unmodified _GVCRKTKK_ 0 0 0 ENSG00000135144|ENST00000548759|DTX1 ENSG00000135144|ENST00000548759|DTX1 ENSG00000135144|ENST00000548759|DTX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2327880859375 2 460.278929 918.543305 NaN NaN NaN NaN NaN NaN NaN 108.45 1 108.45 107.95 108.95 0 0 0 0 0.2396 1 21327 21327 0 0 1 17656 3904 11587 11591 17712 17712 0.08077543873491777 GVCRKTKK 8 Unmodified _GVCRKTKK_ 0 0 0 ENSG00000135144|ENST00000548759|DTX1 ENSG00000135144|ENST00000548759|DTX1 ENSG00000135144|ENST00000548759|DTX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2314453125 2 460.278929 918.543305 NaN NaN NaN NaN NaN NaN NaN 107.6 1 103.46 102.96 103.96 -4.135 0 0 0 0.21486 1 20697 20697 2.8892 0.31174 1 17657 3904 11587 11591 17713 17713 0.08077543873491777 GVDCVKGIVSF 11 Unmodified _GVDCVKGIVSF_ 0 0 0 nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3 nc|ENSG00000066230|P48764-2|SLC9A3 nc|ENSG00000066230|P48764-2|SLC9A3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.216796875 3 375.19872 1122.57433 NaN NaN NaN NaN NaN NaN NaN 103.33 1 103.33 102.83 103.83 0 0 0 0 0.23689 1 20305 20305 2.8433 0.10809 1 17658 1370 11588 11592 17714 17714 0.017946523970749695 GVDDCGDG 8 Unmodified _GVDDCGDG_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.27532958984375 2 369.123968 736.233383 NaN NaN NaN NaN NaN NaN NaN 154.13 1 154.13 153.63 154.63 0 0 0 0 0.21486 1 30889 30889 0.79363 0.79363 1 17659 1627 11589 11593 17715 17715 -0.14528400923961726 GVDDCGDG 8 Unmodified _GVDDCGDG_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 369.2018127441406 2 369.123968 736.233383 NaN NaN NaN NaN NaN NaN NaN 60.733 1 57.419 56.919 57.919 -3.3139 0 0 0 0.23366 1 11315 11315 0.0082765 0 1 17660 1627 11589 11593 17716 17716 -0.14528400923961726 GVDDCGDG 8 Unmodified _GVDDCGDG_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 369.27484130859375 2 369.123968 736.233383 NaN NaN NaN NaN NaN NaN NaN 159.15 1 153.87 153.37 154.37 -5.2748 0 0 0 0.21486 1 30889 30889 0.79363 0.79363 1 17661 1627 11589 11593 17717 17717 -0.14528400923961726 GVDDCGDG 8 Unmodified _GVDDCGDG_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 369.27569580078125 2 369.123968 736.233383 NaN NaN NaN NaN NaN NaN NaN 159.6 1 154.32 153.82 154.82 -5.2712 0 0 0 0.21486 1 30967 30967 0.79363 0.79363 1 17662 1627 11589 11593 17718 17718 -0.14528400923961726 GVDDNGNIIE 10 Unmodified _GVDDNGNIIE_ 0 0 0 tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1 tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1 tr|U7SI07|U7SI07_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02184PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.14227294921875 3 349.164732 1044.47237 NaN NaN NaN NaN NaN NaN NaN 90.328 1 86.283 85.783 86.783 -4.0443 0 0 0 0.22588 1 17206 17206 0.69767 0 1 17663 25921 11590 11594 17719 17719 -0.048089224209888926 GVDEDYVWMF 10 Unmodified _GVDEDYVWMF_ 0 0 0 REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.769287109375 2 630.765714 1259.51688 NaN NaN NaN NaN NaN NaN NaN 59.807 1 56.873 56.373 57.373 -2.9333 0 0 0 2.8426 1 11503 11503 0.063865 0 1 + 17664 14358 11591 11595 17720 17720 -0.10250234599175201 GVDGFNLVVLF 11 Unmodified _GVDGFNLVVLF_ 0 0 0 REV__ENSG00000168003|ENST00000338663|SLC3A2 REV__ENSG00000168003|ENST00000338663|SLC3A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2615356445312 2 590.324057 1178.63356 NaN NaN NaN NaN NaN NaN NaN 165.01 1 160.22 159.72 160.72 -4.7898 0 0 0 0.22632 1 33015 33015 0.0059557 0 1 + 17665 17986 11592 11596 17721 17721 0.05138871682879653 GVDGGGDG 8 Unmodified _GVDGGGDG_ 0 0 0 REV__ENST00000393614.8_1_1:110527389-110528040:+|nuORF REV__ENST00000393614.8_1_1:110527389-110528040:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.0376281738281 2 317.127368 632.240183 NaN NaN NaN NaN NaN NaN NaN 19.039 1 19.039 18.539 19.539 0 0 0 0 0.21486 1 3093 3093 0.79363 0 1 + 17666 21237 11593 11597 17722 17722 -0.09064719981074632 GVDGRGRGRKW 11 Unmodified _GVDGRGRGRKW_ 0 0 0 REV__ENST00000430710.7_1_14:21853573-21853762:-|nuORF REV__ENST00000430710.7_1_14:21853573-21853762:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7614135742188 2 622.341969 1242.66939 0.952 0.00059247 -2.1045 -0.0013097 -1.1525 -0.00071725 622.8417648587058 77.064 0.21075 73.601 73.508 73.719 -3.4633 6 5 2 0 0 0 0.88584 1 15051 15051 0.00056442 0 1 1637100 + 17667 21611 11594 11598 17723 17723 0.05775766703118279 GVDHPSHTL 9 Unmodified _GVDHPSHTL_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2312316894531 2 481.738148 961.461744 0.68314 0.00032909 -0.82651 -0.00039816 -0.14337 -6.9069E-05 481.7377343349304 22.441 0.16805 20.967 20.869 21.037 -1.4742 6 4 2 0 0 0 0.74655 1 3848 3848 21.747 14.457 1 315940 17668 5117 11595 11599 17724 17724 -0.02052860284743474 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 94.588 1 94.588 94.088 95.088 0 0 0 0 0.23508 1 18523 18523 2.7352 0.99292 1 + 17669 17043 11596 11600 17725 17725 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 94.831 1 94.831 94.331 95.331 0 0 0 0 0.23508 1 18571 18571 1.1933 0.12188 1 + 17670 17043 11596 11600 17726 17726 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20184326171875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 95.597 1 95.597 95.097 96.097 0 0 0 0 0.23508 1 18725 18725 2.4985 0 1 + 17671 17043 11596 11600 17727 17727 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 113.24 1 113.24 112.74 113.74 0 0 0 0 0.23508 1 22265 22265 0.96228 0.0979 1 + 17672 17043 11596 11600 17728 17728 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20684814453125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 114.56 1 114.56 114.06 115.06 0 0 0 0 0.23508 1 22535 22535 4.897 0 1 + 17673 17043 11596 11600 17729 17729 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 125.93 1 125.93 125.43 126.43 0 0 0 0 0.23508 1 24847 24847 1.0715 0.10919 1 + 17674 17043 11596 11600 17730 17730 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 126.22 1 126.22 125.72 126.72 0 0 0 0 0.23508 1 24908 24908 4.897 1.3005 1 + 17675 17043 11596 11600 17731 17731 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 153.51 1 153.51 153.01 154.01 0 0 0 0 0.23508 1 30760 30760 0.96228 0.45632 1 + 17676 17043 11596 11600 17732 17732 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 160.31 1 160.31 159.81 160.81 0 0 0 0 0.23508 1 32191 32191 0.96228 0.18574 1 + 17677 17043 11596 11600 17733 17733 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2011413574219 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 78.795 1 75.332 74.832 75.832 -3.4633 0 0 0 0.23508 1 15385 15385 5.2969 0 1 + 17678 17043 11596 11600 17734 17734 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018737792969 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 84.141 1 80.476 79.976 80.976 -3.6641 0 0 0 0.23508 1 16449 16449 2.7352 0.10396 1 + 17679 17043 11596 11600 17735 17735 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 84.609 1 80.945 80.445 81.445 -3.6641 0 0 0 0.23508 1 16538 16538 2.4985 0 1 + 17680 17043 11596 11600 17736 17736 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 87.707 1 83.915 83.415 84.415 -3.7926 0 0 0 0.23508 1 17153 17153 8.1555 0.54658 1 + 17681 17043 11596 11600 17737 17737 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 96.613 1 92.516 92.016 93.016 -4.0978 0 0 0 0.23508 1 18949 18949 4.897 0.70751 1 + 17682 17043 11596 11600 17738 17738 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 98.663 1 94.53 94.03 95.03 -4.1326 0 0 0 0.23508 1 19373 19373 4.897 0 1 + 17683 17043 11596 11600 17739 17739 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.212646484375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 98.852 1 94.72 94.22 95.22 -4.1326 0 0 0 0.23508 1 19411 19411 2.7352 0 1 + 17684 17043 11596 11600 17740 17740 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013854980469 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 101.07 1 96.91 96.41 97.41 -4.1594 0 0 0 0.23508 1 19868 19868 2.7352 0 1 + 17685 17043 11596 11600 17741 17741 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20184326171875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 106.42 1 102.16 101.66 102.66 -4.2638 0 0 0 0.23508 1 20947 20947 4.897 0.36815 1 + 17686 17043 11596 11600 17742 17742 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112.81 1 108.35 107.85 108.85 -4.4539 0 0 0 0.23508 1 22229 22229 2.7352 0.23671 1 + 17687 17043 11596 11600 17743 17743 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2021179199219 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 157.14 1 152.36 151.86 152.86 -4.7885 0 0 0 0.23508 1 31250 31250 2.4985 0 1 + 17688 17043 11596 11600 17744 17744 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 159.87 1 155.07 154.57 155.57 -4.7952 0 0 0 0.23508 1 31786 31786 4.897 1.3005 1 + 17689 17043 11596 11600 17745 17745 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20123291015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 79.608 1 75.803 75.303 76.303 -3.8048 0 0 0 0.23508 1 15105 15105 2.7352 0 1 + 17690 17043 11596 11600 17746 17746 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2019958496094 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 83.055 1 79.181 78.681 79.681 -3.8736 0 0 0 0.23508 1 15772 15772 2.7352 0 1 + 17691 17043 11596 11600 17747 17747 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 84.44 1 80.531 80.031 81.031 -3.9093 0 0 0 0.23508 1 16050 16050 2.7352 0.23671 1 + 17692 17043 11596 11600 17748 17748 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2013854980469 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 100.84 1 96.543 96.043 97.043 -4.297 0 0 0 0.23508 1 19293 19293 2.7352 0.23671 1 + 17693 17043 11596 11600 17749 17749 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 106.51 1 102.13 101.63 102.63 -4.3764 0 0 0 0.23508 1 20428 20428 4.897 0.36815 1 + 17694 17043 11596 11600 17750 17750 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 115.67 1 111.09 110.59 111.59 -4.5815 0 0 0 0.23508 1 22208 22208 2.4985 0 1 + 17695 17043 11596 11600 17751 17751 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 116.19 1 111.61 111.11 112.11 -4.5815 0 0 0 0.23508 1 22297 22297 0.96228 0 1 + 17696 17043 11596 11600 17752 17752 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 116.42 1 111.84 111.34 112.34 -4.5815 0 0 0 0.23508 1 22341 22341 2.4985 0 1 + 17697 17043 11596 11600 17753 17753 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 125.28 1 120.51 120.01 121.01 -4.7681 0 0 0 0.23508 1 24046 24046 1.0715 0 1 + 17698 17043 11596 11600 17754 17754 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012634277344 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 127.29 1 122.49 121.99 122.99 -4.7958 0 0 0 0.23508 1 24433 24433 2.4985 0 1 + 17699 17043 11596 11600 17755 17755 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2005920410156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 130.55 1 125.72 125.22 126.22 -4.8355 0 0 0 0.23508 1 25069 25069 2.4985 1.427 1 + 17700 17043 11596 11600 17756 17756 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 131.05 1 126.22 125.72 126.72 -4.8355 0 0 0 0.23508 1 25162 25162 2.4985 0 1 + 17701 17043 11596 11600 17757 17757 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2021484375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 161.93 1 156.78 156.28 157.28 -5.1438 0 0 0 0.23508 1 31449 31449 1.0715 0.29493 1 + 17702 17043 11596 11600 17758 17758 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2008056640625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 172.61 1 167.71 167.21 168.21 -4.8977 0 0 0 0.23508 1 34240 34240 2.4985 0 1 + 17703 17043 11596 11600 17759 17759 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 79.343 1 75.667 75.167 76.167 -3.676 0 0 0 0.23508 1 15116 15116 2.7352 0 1 + 17704 17043 11596 11600 17760 17760 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20086669921875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 87.882 1 84.131 83.631 84.631 -3.7501 0 0 0 0.23508 1 16815 16815 8.7454 1.1365 1 + 17705 17043 11596 11600 17761 17761 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 92.12 1 88.312 87.812 88.812 -3.8083 0 0 0 0.23508 1 17646 17646 2.7352 0.23671 1 + 17706 17043 11596 11600 17762 17762 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21539306640625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 95.814 1 91.933 91.433 92.433 -3.881 0 0 0 0.23508 1 18386 18386 4.897 1.5774 1 + 17707 17043 11596 11600 17763 17763 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 96.417 1 92.498 91.998 92.998 -3.9194 0 0 0 0.23508 1 18501 18501 2.4985 0.65425 1 + 17708 17043 11596 11600 17764 17764 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 98.827 1 94.87 94.37 95.37 -3.9564 0 0 0 0.23508 1 18969 18969 2.4985 0.21571 1 + 17709 17043 11596 11600 17765 17765 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 106.61 1 102.51 102.01 103.01 -4.0913 0 0 0 0.23508 1 20498 20498 4.1895 0.31317 1 + 17710 17043 11596 11600 17766 17766 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013854980469 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 127.13 1 122.43 121.93 122.93 -4.6998 0 0 0 0.23508 1 24456 24456 2.4985 0.21571 1 + 17711 17043 11596 11600 17767 17767 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 128.61 1 123.87 123.37 124.37 -4.7408 0 0 0 0.23508 1 24749 24749 1.0715 0 1 + 17712 17043 11596 11600 17768 17768 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2012634277344 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 129.86 1 125.08 124.58 125.58 -4.7725 0 0 0 0.23508 1 24984 24984 4.1895 0.31317 1 + 17713 17043 11596 11600 17769 17769 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 130.93 1 126.16 125.66 126.66 -4.7725 0 0 0 0.23508 1 25204 25204 2.4985 0.84587 1 + 17714 17043 11596 11600 17770 17770 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2002868652344 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 152.28 1 147.1 146.6 147.6 -5.1759 0 0 0 0.23508 1 29512 29512 1.0715 0.61312 1 + 17715 17043 11596 11600 17771 17771 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20086669921875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 155.41 1 150.16 149.66 150.66 -5.2526 0 0 0 0.23508 1 30137 30137 4.897 0 1 + 17716 17043 11596 11600 17772 17772 0.0461712798901317 GVDKRYLVE 9 Unmodified _GVDKRYLVE_ 0 0 0 REV__ENSG00000150760|ENST00000623213|DOCK1 REV__ENSG00000150760|ENST00000623213|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 158.75 1 153.48 152.98 153.98 -5.2712 0 0 0 0.23508 1 30802 30802 4.897 0 1 + 17717 17043 11596 11600 17773 17773 0.0461712798901317 GVDLINGKF 9 Unmodified _GVDLINGKF_ 0 0 0 tr|U7T1T8|U7T1T8_FUSNUMethionyl-tRNAformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fmtPE=3SV=1 tr|U7T1T8|U7T1T8_FUSNUMethionyl-tRNAformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fmtPE=3SV=1 tr|U7T1T8|U7T1T8_FUSNUMethionyl-tRNAformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fmtPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7683410644531 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 118.75 1 114.14 113.64 114.64 -4.6106 0 0 0 0.23508 1 22786 22786 10.074 0.72649 1 17718 26330 11597 11601 17774 17774 0.04098071414523474 GVDLSTLQS 9 Unmodified _GVDLSTLQS_ 0 0 0 REV__ENSG00000164342|ENST00000296795|TLR3 REV__ENSG00000164342|ENST00000296795|TLR3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23870849609375 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 66.894 1 66.894 66.394 67.394 0 0 0 0 0.1124 1 12925 12925 36.044 10.645 1 + 17719 17677 11598 11602 17775 17775 0.0033318441828669165 GVDLSTLQS 9 Unmodified _GVDLSTLQS_ 0 0 0 REV__ENSG00000164342|ENST00000296795|TLR3 REV__ENSG00000164342|ENST00000296795|TLR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23870849609375 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 70.052 1 66.812 66.312 67.312 -3.2397 0 0 0 0.22251 1 13628 13628 16.942 0 1 + 17720 17677 11598 11602 17776 17776 0.0033318441828669165 GVDNAFLIA 9 Unmodified _GVDNAFLIA_ 0 0 0 nc|ENSG00000134955|Q8TED4-3|SLC37A2;ENST00000526405.5_1_11:124933263-124955028:+|nuORF;ENSG00000134955|ENST00000403796|SLC37A2;nc|ENSG00000134955|Q8TED4-2|SLC37A2 nc|ENSG00000134955|Q8TED4-3|SLC37A2 nc|ENSG00000134955|Q8TED4-3|SLC37A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2481994628906 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 72.69 1 69.379 68.879 69.879 -3.3107 0 0 0 0.23508 1 14166 14166 7.9102 0 1 17721 3887 11599 11603 17777 17777 0.018580960061512997 GVDNPGHPY 9 Unmodified _GVDNPGHPY_ 0 0 0 ENSG00000166165|ENST00000348956|CKB ENSG00000166165|ENST00000348956|CKB ENSG00000166165|ENST00000348956|CKB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72503662109375 2 478.217049 954.419545 -0.042168 -2.0166E-05 -0.61494 -0.00029407 -0.65711 -0.00031424 478.2169102029603 29.12 0.44877 29.12 28.914 29.363 0 17 12 2 0 0 0 0.32599 1 5195 5195 36.044 21.206 1 1767600 17722 5694 11600 11604 17778 17778 -0.059488356931410635 GVDNPGHPY 9 Unmodified _GVDNPGHPY_ 0 0 0 ENSG00000166165|ENST00000348956|CKB ENSG00000166165|ENST00000348956|CKB ENSG00000166165|ENST00000348956|CKB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7440185546875 2 478.217049 954.419545 0.31982 0.00015294 -0.54082 -0.00025863 -0.22099 -0.00010568 478.2167326195711 31.437 0.52649 29.207 28.92 29.446 -2.2305 32 14 3 0 0 0 0.72864 1 5665 5665 16.942 11.182 1 2776700 17723 5694 11600 11604 17779 17779 -0.059488356931410635 GVDNPGHPY 9 Unmodified _GVDNPGHPY_ 0 0 0 ENSG00000166165|ENST00000348956|CKB ENSG00000166165|ENST00000348956|CKB ENSG00000166165|ENST00000348956|CKB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72918701171875 2 478.217049 954.419545 0.28991 0.00013864 -0.45183 -0.00021607 -0.16191 -7.7429E-05 478.21680153727107 31.263 0.52775 29.237 28.952 29.48 -2.0264 32 14 3 0 0 0 0.031632 1 5374 5374 71.134 47.113 1 3638600 17724 5694 11600 11604 17780 17780 -0.059488356931410635 GVDNPGHPY 9 Unmodified _GVDNPGHPY_ 0 0 0 ENSG00000166165|ENST00000348956|CKB ENSG00000166165|ENST00000348956|CKB ENSG00000166165|ENST00000348956|CKB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7290954589844 2 478.217049 954.419545 0.50639 0.00024216 -0.79319 -0.00037932 -0.2868 -0.00013715 478.21661363760535 31.36 0.49304 29.211 28.951 29.444 -2.1483 30 13 3 0 0 0 0.37212 1 5391 5391 32.117 26.357 1 1955500 17725 5694 11600 11604 17781 17781 -0.059488356931410635 GVDPIWNN 8 Unmodified _GVDPIWNN_ 0 0 0 REV__nc|ENSG00000168743|Q6UXI9-2|NPNT REV__nc|ENSG00000168743|Q6UXI9-2|NPNT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2243957519531 2 457.721967 913.429381 0.097145 4.4465E-05 0.078414 3.5892E-05 0.17556 8.0357E-05 457.7218964639377 58.941 0.73195 55.736 55.368 56.1 -3.2052 38 20 2 0 0 0 0.73426 1 10951 10951 9.3474 0.75416 1 1638800 + 17726 18048 11601 11605 17782 17782 -0.030796476877753776 GVDPYMWEPQE 11 Unmodified _GVDPYMWEPQE_ 0 0 0 nc|ENSG00000289750|Q9H1K0-2|RBSN;ENST00000449964.6_1_3:15122283-15137627:-|nuORF;ENSG00000131381|ENST00000253699|RBSN nc|ENSG00000289750|Q9H1K0-2|RBSN nc|ENSG00000289750|Q9H1K0-2|RBSN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.8723449707031 3 450.860544 1349.5598 NaN NaN NaN NaN NaN NaN NaN 11.626 1 10.722 10.222 11.222 -0.90401 0 0 0 0.23698 1 1553 1553 0.094841 0 1 17727 3674 11602 11606 17783 17783 -0.1009946454173587 GVDQEEGDGGE 11 Unmodified _GVDQEEGDGGE_ 0 0 0 REV__ENSG00000130764|ENST00000378251|LRRC47 REV__ENSG00000130764|ENST00000378251|LRRC47 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.779541015625 2 546.209815 1090.40508 0.50728 0.00027708 -1.8395 -0.0010048 -1.3322 -0.00072768 546.2106919586221 118.18 0.8175 113.77 113.57 114.38 -4.4088 65 22 4 0 0 0 0.61809 1 22744 22744 0.172 0 1 5502900 + 17728 16031 11603 11607 17784 17784 -0.13650997422564615 GVDQIHIKR 9 Unmodified _GVDQIHIKR_ 0 0 0 FBL|p.P159R|1|0.37|ENSG00000105202|chr19:39839108-39839108|G/C|missense_variant FBL|p.P159R|1|0.37|ENSG00000105202|chr19:39839108-39839108|G/C|missense_variant FBL|p.P159R|1|0.37|ENSG00000105202|chr19:39839108-39839108|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2774047851562 2 533.311815 1064.60908 NaN NaN NaN NaN NaN NaN NaN 93.101 1 88.957 88.457 89.457 -4.1435 0 0 0 0.23508 1 17742 17742 6.7232 0.96273 1 17729 11802 11604 11608 17785 17785 0.07935656320046292 GVDVNVSITG 10 Unmodified _GVDVNVSITG_ 0 0 0 REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1 REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2549743652344 2 480.753464 959.492375 -0.068008 -3.2695E-05 0.43134 0.00020737 0.36333 0.00017467 480.75352034203246 18.476 0.31719 18.476 18.335 18.652 0 13 8 2 0 0 0 0.87854 1 3007 3007 9.3831 0.63772 1 1381500 + 17730 24864 11605 11609 17786 17786 0.011008733096332435 GVDWPGRVA 9 Unmodified _GVDWPGRVA_ 0 0 0 ENST00000552564.5_1_12:54797354-54798257:-|nuORF ENST00000552564.5_1_12:54797354-54798257:-|nuORF ENST00000552564.5_1_12:54797354-54798257:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.737548828125 2 478.751059 955.487565 0.3032 0.00014516 -0.12003 -5.7462E-05 0.18317 8.7694E-05 478.7510030949344 71.835 0.41801 68.208 68.024 68.442 -3.6275 18 11 2 0 0 0 0.77734 1 13562 13562 19.257 13.497 1 975300 17731 11196 11606 11610 17787 17787 0.008040339575245525 GVEAEQEKRSA 11 Unmodified _GVEAEQEKRSA_ 0 0 0 ENSG00000165084|ENST00000518698|C8orf34;ENST00000521406.5_1_8:69442879-69730478:+|nuORF;nc|nan|Q49A92-2|C8orf34 ENSG00000165084|ENST00000518698|C8orf34 ENSG00000165084|ENST00000518698|C8orf34 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.28125 2 602.301841 1202.58913 NaN NaN NaN NaN NaN NaN NaN 143.52 1 138.86 138.36 139.36 -4.656 0 0 0 0.22632 1 28387 28387 0.026206 0 1 17732 5593 11607 11611 17788 17788 -0.004061842012333727 GVEALTESELC 11 Unmodified _GVEALTESELC_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2;ENST00000561328.1_1_15:60734582-60741127:-|nuORF;ENST00000558121.5_1_15:60715835-60734771:-|nuORF ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.31689453125 2 575.768454 1149.52235 0.23867 0.00013742 0.24378 0.00014036 0.48244 0.00027778 575.767802412859 136.51 0.21213 131.68 131.63 131.84 -4.8307 7 5 2 0 0 0 0.94712 1 26314 26314 3.2813 0.28607 1 1144400 17733 3549 11608 11612 17789 17789 -0.04642555807345161 GVEDCDGSDF 10 Unmodified _GVEDCDGSDF_ 0 0 0 nc|ENSG00000206561|Q9Y215-3|COLQ;nc|ENSG00000206561|Q9Y215-2|COLQ;nc|ENSG00000206561|Q9Y215-5|COLQ;nc|ENSG00000206561|Q9Y215-4|COLQ;ENSG00000206561|ENST00000383788|COLQ nc|ENSG00000206561|Q9Y215-3|COLQ nc|ENSG00000206561|Q9Y215-3|COLQ MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2755126953125 2 522.184754 1042.35496 NaN NaN NaN NaN NaN NaN NaN 115.4 1 115.4 114.9 115.9 0 0 0 0 2.8426 1 22713 22713 0.043787 0 1 17734 7674 11609 11613 17790 17790 -0.16452823352119594 GVEDDEEDED 10 Unmodified _GVEDDEEDED_ 0 0 0 NOC2L|p.E704D|1|0.27|ENSG00000188976|chr1:945088-945088|C/A|missense_variant NOC2L|p.E704D|1|0.27|ENSG00000188976|chr1:945088-945088|C/A|missense_variant NOC2L|p.E704D|1|0.27|ENSG00000188976|chr1:945088-945088|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3215942382812 2 576.19657 1150.37859 NaN NaN NaN NaN NaN NaN NaN 146.55 1 141.44 140.94 141.94 -5.1108 0 0 0 2.8426 1 28345 28345 0 0 1 17735 12696 11610 11614 17791 17791 -0.19058731104587423 GVEDVLAGR 9 Unmodified _GVEDVLAGR_ 0 0 0 REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2342529296875 2 458.248349 914.482145 -0.2706 -0.000124 0.30859 0.00014141 0.037991 1.741E-05 458.24827475160623 34.613 0.6219 32.296 31.876 32.498 -2.3175 27 17 3 0 0 0 0.48181 1 6399 6399 1.2148 0 1 1309000 + 17736 23349 11611 11615 17792 17792 0.02148310375048368 GVEEDEGCC 9 Unmodified _GVEEDEGCC_ 0 0 0 nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF;ENSG00000197136|ENST00000355703|PCNX3 nc|ENSG00000197136|Q9H6A9-3|PCNX3 nc|ENSG00000197136|Q9H6A9-3|PCNX3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1060791015625 3 314.105609 939.294997 NaN NaN NaN NaN NaN NaN NaN 130.03 1 130.03 129.53 130.53 0 0 0 0 0.23508 1 25693 25693 0.26902 0.1097 1 17737 7333 11612 11616 17793 17793 -0.17707837286991435 GVEEDEGCCC 10 Unmodified _GVEEDEGCCC_ 0 0 0 nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF;ENSG00000197136|ENST00000355703|PCNX3 nc|ENSG00000197136|Q9H6A9-3|PCNX3 nc|ENSG00000197136|Q9H6A9-3|PCNX3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2756958007812 2 522.159367 1042.30418 NaN NaN NaN NaN NaN NaN NaN 143.61 1 143.61 143.11 144.11 0 0 0 0 2.8426 1 28663 28663 0 0 1 17738 7333 11613 11617 17794 17794 -0.2152781199297351 GVEEEDDDDY 10 Unmodified _GVEEEDDDDY_ 0 0 0 ENSG00000188522|ENST00000388995|FAM83G;nc|ENSG00000188522|A6ND36-2|FAM83G;ENST00000399096.2_1_17:18880803-18882234:-|nuORF ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 395.79437255859375 3 395.807051 1184.39932 NaN NaN NaN NaN NaN NaN NaN 23.795 1 23.795 23.295 24.295 0 0 0 0 0.22588 1 4074 4074 0.77653 0.078866 1 17739 7172 11614 11618 17795 17795 -0.18550140724937592 GVEEERSWRPQ 11 Unmodified _GVEEERSWRPQ_ 0 0 0 ENST00000595789.5_1_19:44056953-44079610:-|nuORF ENST00000595789.5_1_19:44056953-44079610:-|nuORF ENST00000595789.5_1_19:44056953-44079610:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2243957519531 3 458.224985 1371.65313 NaN NaN NaN NaN NaN NaN NaN 50.198 1 47.191 46.691 47.691 -3.0068 0 0 0 0.22632 1 9222 9222 0.0059557 0 1 17740 11661 11615 11619 17796 17796 -0.017834040442721744 GVEELKRTF 9 Unmodified _GVEELKRTF_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 155.12 1 155.12 154.62 155.62 0 0 0 0 0.23508 1 31093 31093 1.1933 0.23107 1 + 17741 16781 11616 11620 17797 17797 0.046171279889904326 GVEGPGWF 8 Unmodified _GVEGPGWF_ 0 0 0 REV__ENST00000468964.1_1_10:135084331-135084895:-|nuORF REV__ENST00000468964.1_1_10:135084331-135084895:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.23651123046875 2 424.700503 847.386454 -0.11525 -4.8945E-05 0.25821 0.00010966 0.14296 6.0716E-05 424.7006379157459 95.291 0.51749 91.241 90.926 91.444 -4.0496 22 14 2 0 0 0 0.7545 1 18656 18656 6.3541 1.1234 1 910860 + 17742 22004 11617 11621 17798 17798 -0.04334417745189967 GVEGWSCAHIW 11 Unmodified _GVEGWSCAHIW_ 0 0 0 ENST00000443872.6_1_2:71295732-71299822:+|nuORF ENST00000443872.6_1_2:71295732-71299822:+|nuORF ENST00000443872.6_1_2:71295732-71299822:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7786254882812 2 622.77949 1243.54443 NaN NaN NaN NaN NaN NaN NaN 13.476 1 12.467 11.967 12.967 -1.0098 0 0 0 0.23698 1 1957 1957 1.4819 0.8804 1 17743 9917 11618 11622 17799 17799 -0.06760286548274053 GVEGWSCAHIW 11 Unmodified _GVEGWSCAHIW_ 0 0 0 ENST00000443872.6_1_2:71295732-71299822:+|nuORF ENST00000443872.6_1_2:71295732-71299822:+|nuORF ENST00000443872.6_1_2:71295732-71299822:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7786865234375 2 622.77949 1243.54443 NaN NaN NaN NaN NaN NaN NaN 13.667 1 12.456 11.956 12.956 -1.2106 0 0 0 0.23698 1 1748 1748 1.3295 0.13619 1 17744 9917 11618 11622 17800 17800 -0.06760286548274053 GVEHMVFP 8 Unmodified _GVEHMVFP_ 0 0 0 REV__nc|ENSG00000130177|Q13042-4|CDC16 REV__nc|ENSG00000130177|Q13042-4|CDC16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2248229980469 2 458.223288 914.432024 NaN NaN NaN NaN NaN NaN NaN 114.44 1 114.44 113.94 114.94 0 0 0 0 0.23366 1 22511 22511 0.0082765 0 1 + 17745 15989 11619 11623 17801 17801 -0.02861515554457128 GVEKLFTGPRH 11 Unmodified _GVEKLFTGPRH_ 0 0 0 REV__ENST00000413670.2_1_1:98510427-98510946:-|nuORF REV__ENST00000413670.2_1_1:98510427-98510946:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.2320251464844 3 414.231412 1239.67241 NaN NaN NaN NaN NaN NaN NaN 153.1 1 148.33 147.83 148.83 -4.7684 0 0 0 0.23698 1 30422 30422 1.2148 0.10508 1 + 17746 21441 11620 11624 17802 17802 0.06215597037294174 GVEKVNVFL 9 Unmodified _GVEKVNVFL_ 0 0 0 ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 503.7956848144531 2 502.792392 1003.57023 0.19563 9.8361E-05 0.21738 0.00010929 0.41301 0.00020766 502.79245653132966 129.94 0.66046 129.94 129.53 130.19 0 49 18 3 0 0 0 0.67531 1 25723 25723 7.9102 0.62092 1 9197100 17747 10271 11621 11625 17803 17803 0.06858930965665877 GVEKVNVFL 9 Unmodified _GVEKVNVFL_ 0 0 0 ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 502.792392 1003.57023 -0.029531 -1.4848E-05 0.37168 0.00018688 0.34215 0.00017203 502.79246255861915 134.21 0.87703 129.57 129.11 129.98 -4.6399 -0.13652 -0.00017606 NaN 7.9102 57 24 3 NaN NaN NaN NaN 0 NaN NaN 0 9109600 17748 10271 11621 11625 0.06858930965665877 GVEKVNVFL 9 Unmodified _GVEKVNVFL_ 0 0 0 ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 502.792392 1003.57023 -0.18416 -9.2593E-05 0.8855 0.00044522 0.70134 0.00035263 502.7926683229575 134.5 0.83592 129.63 129.2 130.03 -4.8726 -0.079702 0.00034063 NaN 7.9102 59 23 3 NaN NaN NaN NaN 0 NaN NaN 0 9822200 17749 10271 11621 11625 0.06858930965665877 GVEKVNVFL 9 Unmodified _GVEKVNVFL_ 0 0 0 ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 502.792392 1003.57023 0.086847 4.3666E-05 0.93748 0.00047136 1.0243 0.00051503 502.79256664360565 134.5 0.88254 129.69 129.13 130.01 -4.8175 -0.021343 0.00039291 NaN 7.9102 50 24 3 NaN NaN NaN NaN 0 NaN NaN 0 8347800 17750 10271 11621 11625 0.06858930965665877 GVELGSCRCLR 11 Unmodified _GVELGSCRCLR_ 0 0 0 ENST00000303406.4_3_12:54410833-54411064:+|nuORF ENST00000303406.4_3_12:54410833-54411064:+|nuORF ENST00000303406.4_3_12:54410833-54411064:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 398.2022399902344 3 398.202359 1191.58525 NaN NaN NaN NaN NaN NaN NaN 54.657 1 51.773 51.273 52.273 -2.8837 0 0 0 0.22862 1 10438 10438 4.7159 0.30977 1 17751 8586 11622 11626 17804 17804 -0.0028826850032146467 GVELMPDVP 9 Unmodified _GVELMPDVP_ 0 0 0 HADHB|p.S169P|1|0.3|ENSG00000138029|chr2:26278676-26278676|T/C|missense_variant HADHB|p.S169P|1|0.3|ENSG00000138029|chr2:26278676-26278676|T/C|missense_variant HADHB|p.S169P|1|0.3|ENSG00000138029|chr2:26278676-26278676|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7347717285156 2 478.741511 955.468469 NaN NaN NaN NaN NaN NaN NaN 103.94 1 99.886 99.386 100.39 -4.0543 0 0 0 0.20155 1 19986 19986 23.148 3.8914 1 17752 11872 11623 11627 17805 17805 -0.01104683448409105 GVELRDNQL 9 Unmodified _GVELRDNQL_ 0 0 0 ENSG00000232810|ENST00000449264|TNF ENSG00000232810|ENST00000449264|TNF ENSG00000232810|ENST00000449264|TNF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2792358398438 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 100.78 1 100.78 100.28 101.28 0 0 0 0 0.21848 1 19774 19774 18.135 0 1 17753 7815 11624 11628 17806 17806 0.021153669495106442 GVEMDTPR 8 Unmodified _GVEMDTPR_ 0 0 0 HERC1|p.Q1188R|1|0.2|ENSG00000103657|chr15:63725297-63725297|T/C|missense_variant HERC1|p.Q1188R|1|0.2|ENSG00000103657|chr15:63725297-63725297|T/C|missense_variant HERC1|p.Q1188R|1|0.2|ENSG00000103657|chr15:63725297-63725297|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 302.031494140625 3 302.144615 903.412016 NaN NaN NaN NaN NaN NaN NaN 30.347 1 28.23 27.73 28.73 -2.1167 0 0 0 0.21486 1 5479 5479 0.45834 0 1 17754 11875 11625 11629 17807 17807 -0.04355311285087282 GVEMDTPR 8 Unmodified _GVEMDTPR_ 0 0 0 HERC1|p.Q1188R|1|0.2|ENSG00000103657|chr15:63725297-63725297|T/C|missense_variant HERC1|p.Q1188R|1|0.2|ENSG00000103657|chr15:63725297-63725297|T/C|missense_variant HERC1|p.Q1188R|1|0.2|ENSG00000103657|chr15:63725297-63725297|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 302.0448913574219 3 302.144615 903.412016 NaN NaN NaN NaN NaN NaN NaN 24.67 1 23.136 22.636 23.636 -1.5342 0 0 0 0.21486 1 4024 4024 0.45834 0 1 17755 11875 11625 11629 17808 17808 -0.04355311285087282 GVEMDTPR 8 Unmodified _GVEMDTPR_ 0 0 0 HERC1|p.Q1188R|1|0.2|ENSG00000103657|chr15:63725297-63725297|T/C|missense_variant HERC1|p.Q1188R|1|0.2|ENSG00000103657|chr15:63725297-63725297|T/C|missense_variant HERC1|p.Q1188R|1|0.2|ENSG00000103657|chr15:63725297-63725297|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.0321960449219 3 302.144615 903.412016 NaN NaN NaN NaN NaN NaN NaN 28.491 1 26.495 25.995 26.995 -1.9962 0 0 0 0.21486 1 4811 4811 1.6526 1.1943 1 17756 11875 11625 11629 17809 17809 -0.04355311285087282 GVEMEEEE 8 Unmodified _GVEMEEEE_ 0 0 0 REV__MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant REV__MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.2271423339844 3 317.791907 950.353892 NaN NaN NaN NaN NaN NaN NaN 63.901 1 63.901 63.401 64.401 0 0 0 0 0.21486 1 12296 12296 0.45834 0 1 + 17757 15465 11626 11630 17810 17810 -0.12327037721013312 GVENLILL 8 Unmodified _GVENLILL_ 0 0 0 nc|ENSG00000075340|P35612-4|ADD2;nc|ENSG00000075340|P35612-2|ADD2;nc|ENSG00000075340|P35612-8|ADD2;nc|ENSG00000075340|P35612-9|ADD2;nc|ENSG00000075340|P35612-3|ADD2;ENSG00000075340|ENST00000264436|ADD2 nc|ENSG00000075340|P35612-4|ADD2 nc|ENSG00000075340|P35612-4|ADD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 435.7696838378906 2 435.768386 869.522219 NaN NaN NaN NaN NaN NaN NaN 52.38 1 49.498 48.998 49.998 -2.8824 0 0 0 0.23782 1 9965 9965 0.30703 0 1 17758 12234 11627 11631 17811 17811 0.08223857045629757 GVEQELLGLE 10 Unmodified _GVEQELLGLE_ 0 0 0 REV__ENST00000598734.1_1_19:39421606-39422228:+|nuORF REV__ENST00000598734.1_1_19:39421606-39422228:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7893676757812 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 167.37 1 162.43 161.93 162.93 -4.948 0 0 0 2.8426 1 32918 32918 0.0013812 0 1 + 17759 23397 11628 11632 17812 17812 0.02109698169647345 GVERKSRW 8 Unmodified _GVERKSRW_ 0 0 0 JPH4|p.V143Gfs*215|1|0.36|ENSG00000092051|chr14:23576408-23576409|-/C|frameshift_variant;ENST00000553505.1_1_14:24044793-24046767:-|nuORF;ENSG00000092051|ENST00000356300|JPH4 JPH4|p.V143Gfs*215|1|0.36|ENSG00000092051|chr14:23576408-23576409|-/C|frameshift_variant JPH4|p.V143Gfs*215|1|0.36|ENSG00000092051|chr14:23576408-23576409|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 340.0191345214844 3 339.857797 1016.55156 -0.4714 -0.00016021 -0.6043 -0.00020538 -1.0757 -0.00036558 339.85747539565637 16.95 0.14307 15.678 15.588 15.731 -1.2722 5 3 2 0 0 0 1.0276 1 2465 2465 1.8442 0.19162 1 125040 17760 1821 11629 11633 17813 17813 0.043948141144596775 GVESHIYQL 9 Unmodified _GVESHIYQL_ 0 0 0 nc|ENSG00000165195|P37287-2|PIGA;ENSG00000165195|ENST00000333590|PIGA nc|ENSG00000165195|P37287-2|PIGA nc|ENSG00000165195|P37287-2|PIGA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6904907226562 2 523.269281 1044.52401 -0.8484 -0.00044394 2.6677 0.0013959 1.8193 0.00095199 523.2705432797095 14.566 0.17078 13.452 13.365 13.536 -1.1142 6 4 2 0 0 0 0.87888 1 2174 2174 2.0598 0.21551 1 297660 17761 5607 11630 11634 17814 17814 0.003528660635538472 GVESHIYQL 9 Unmodified _GVESHIYQL_ 0 0 0 nc|ENSG00000165195|P37287-2|PIGA;ENSG00000165195|ENST00000333590|PIGA nc|ENSG00000165195|P37287-2|PIGA nc|ENSG00000165195|P37287-2|PIGA MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.269281 1044.52401 0.061269 3.206E-05 -0.53303 -0.00027892 -0.47177 -0.00024686 523.7713358342003 13.726 0.21314 13.726 13.615 13.828 0 0.13697 -0.0027433 NaN 2.0598 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 538430 17762 5607 11630 11634 0.003528660635538472 GVESHYSRACA 11 Unmodified _GVESHYSRACA_ 0 0 0 TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant;TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant;ENSG00000100154|ENST00000397906|TTC28 TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2689208984375 2 590.264204 1178.51386 NaN NaN NaN NaN NaN NaN NaN 96.108 1 96.108 95.608 96.608 0 0 0 0 0.22862 1 18826 18826 9.3831 1.2276 1 17763 1934 11631 11635 17815 17815 -0.06826064933306952 GVESSIVDGP 10 Unmodified _GVESSIVDGP_ 0 0 0 REV__ENST00000584716.1_1_17:30815096-30816294:+|nuORF REV__ENST00000584716.1_1_17:30815096-30816294:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24072265625 2 480.237647 958.460741 -0.030259 -1.4532E-05 0.23096 0.00011092 0.2007 9.6386E-05 480.23770063007976 44.074 0.80135 41.284 40.876 41.677 -2.79 50 22 3 0 0 0 0.45952 2 8273 8273;8313 26.884 12.045 1 13477000 + 17764 23255 11632 11636 17816;17817 17816 -0.020151194443315035 GVESSIVDGP 10 Unmodified _GVESSIVDGP_ 0 0 0 REV__ENST00000584716.1_1_17:30815096-30816294:+|nuORF REV__ENST00000584716.1_1_17:30815096-30816294:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2408447265625 2 480.237647 958.460741 -0.019667 -9.4446E-06 0.2131 0.00010234 0.19343 9.2894E-05 480.23774840718045 44.13 0.97803 41.364 40.722 41.7 -2.7661 74 27 5 0 0 0 0.37773 1 8007 8007 32.305 1.6689 1 8695400 + 17765 23255 11632 11636 17818 17818 -0.020151194443315035 GVESSIVDGP 10 Unmodified _GVESSIVDGP_ 0 0 0 REV__ENST00000584716.1_1_17:30815096-30816294:+|nuORF REV__ENST00000584716.1_1_17:30815096-30816294:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.237647 958.460741 0.1554 7.4629E-05 0.4202 0.00020179 0.5756 0.00027642 480.2378286486346 41.205 0.69958 41.205 40.813 41.513 0 -0.088787 6.8653E-05 NaN 32.305 48 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6689200 + 17766 23255 11632 11636 -0.020151194443315035 GVESSQLIS 9 Unmodified _GVESSQLIS_ 0 0 0 REV__ZBTB26|p.F363Lfs*7|1|0.33|ENSG00000171448|chr9:122918846-122918846|A/-|frameshift_variant REV__ZBTB26|p.F363Lfs*7|1|0.33|ENSG00000171448|chr9:122918846-122918846|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23883056640625 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 131.28 1 131.28 130.78 131.78 0 0 0 0 0.19632 1 25955 25955 0.20686 0 1 + 17767 18225 11633 11637 17819 17819 0.0033318441828669165 GVESSQLIS 9 Unmodified _GVESSQLIS_ 0 0 0 REV__ZBTB26|p.F363Lfs*7|1|0.33|ENSG00000171448|chr9:122918846-122918846|A/-|frameshift_variant REV__ZBTB26|p.F363Lfs*7|1|0.33|ENSG00000171448|chr9:122918846-122918846|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23956298828125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 74.981 1 71.617 71.117 72.117 -3.3643 0 0 0 0.19679 1 14634 14634 0.073264 0 1 + 17768 18225 11633 11637 17820 17820 0.0033318441828669165 GVETNYGPSY 10 Unmodified _GVETNYGPSY_ 0 0 0 REV__ENSG00000130414|ENST00000252711|NDUFA10;REV__TMEM131-NDUFA10|1|fusion REV__ENSG00000130414|ENST00000252711|NDUFA10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7699584960938 2 543.740554 1085.46655 NaN NaN NaN NaN NaN NaN NaN 95.683 1 95.683 95.183 96.183 0 0 0 0 0.22569 1 18744 18744 15.847 1.0089 1 + 17769 16004;24813 11634 11638 17821 17821 -0.07276020932658867 GVEWCFFFLP 10 Unmodified _GVEWCFFFLP_ 0 0 0 REV__ENST00000485430.1_1_3:195447878-195449661:+|nuORF REV__ENST00000485430.1_1_3:195447878-195449661:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7744750976562 2 622.794078 1243.5736 NaN NaN NaN NaN NaN NaN NaN 160.37 1 155.58 155.08 156.08 -4.7952 0 0 0 2.8426 1 31893 31893 0.043787 0 1 + 17770 18529 11635 11639 17822 17822 -0.038441422519781554 GVFAFLRKIK 10 Unmodified _GVFAFLRKIK_ 0 0 0 ENST00000319410.9_1_16:75661640-75661775:-|nuORF ENST00000319410.9_1_16:75661640-75661775:-|nuORF ENST00000319410.9_1_16:75661640-75661775:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2711181640625 2 589.874051 1177.73355 NaN NaN NaN NaN NaN NaN NaN 93.087 1 88.943 88.443 89.443 -4.1435 0 0 0 2.8426 1 17740 17740 0 0 1 17771 8701 11636 11640 17823 17823 0.15179153807343937 GVFAIAVLLK 10 Unmodified _GVFAIAVLLK_ 0 0 0 REV__ABCA4|p.S1071L|1|0.38|ENSG00000198691|chr1:94042877-94042877|G/A|missense_variant REV__ABCA4|p.S1071L|1|0.38|ENSG00000198691|chr1:94042877-94042877|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.0738220214844 3 344.226827 1029.65865 NaN NaN NaN NaN NaN NaN NaN 57.131 1 54.237 53.737 54.737 -2.8944 0 0 0 0.22588 1 10964 10964 0.77653 0.37582 1 + 17772 12888 11637 11641 17824 17824 0.14500971276129349 GVFALGDP 8 Unmodified _GVFALGDP_ 0 0 0 ENST00000261401.7_1_12:109039947-109040256:-|nuORF ENST00000261401.7_1_12:109039947-109040256:-|nuORF ENST00000261401.7_1_12:109039947-109040256:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 388.2026672363281 2 388.202879 774.391205 NaN NaN NaN NaN NaN NaN NaN 156.92 1 152.13 151.63 152.63 -4.7885 0 0 0 0.21486 1 31205 31205 2.5775 1.7838 1 17773 8296 11638 11642 17825 17825 -0.005015336024371209 GVFDCWAVF 9 Unmodified _GVFDCWAVF_ 0 0 0 ENSG00000180914|ENST00000316793|OXTR ENSG00000180914|ENST00000316793|OXTR ENSG00000180914|ENST00000316793|OXTR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2720336914062 2 522.236396 1042.45824 NaN NaN NaN NaN NaN NaN NaN 60.613 1 57.3 56.8 57.8 -3.3139 0 0 0 0.19656 1 11289 11289 0.073264 0 1 17774 6701 11639 11643 17826 17826 -0.061292463830113775 GVFEEDDSPAN 11 Unmodified _GVFEEDDSPAN_ 0 0 0 REV__CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant REV__CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2608032226562 2 590.243657 1178.47276 NaN NaN NaN NaN NaN NaN NaN 140.46 1 135.59 135.09 136.09 -4.8678 0 0 0 0.22632 1 27083 27083 0.172 0.098736 1 + 17775 13343 11640 11644 17827 17827 -0.109335474917998 GVFEEDDSPAN 11 Unmodified _GVFEEDDSPAN_ 0 0 0 REV__CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant REV__CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2608032226562 2 590.243657 1178.47276 NaN NaN NaN NaN NaN NaN NaN 140.48 1 135.61 135.11 136.11 -4.8678 0 0 0 0.23324 1 27086 27086 5.7319 0 1 + 17776 13343 11640 11644 17828 17828 -0.109335474917998 GVFFPVFAYAS 11 Unmodified _GVFFPVFAYAS_ 0 0 0 ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2754516601562 2 602.8055 1203.59645 1.0772 0.00064931 0.55139 0.00033238 1.6285 0.00098169 602.8058195427933 62.649 0.59513 59.687 59.392 59.987 -2.9614 35 16 3 0 0 0 0.91954 1 12102 12102 9.3831 4.0862 1 4069800 17777 2543 11641 11645 17829 17829 0.002792001371517472 GVFGGPYP 8 Unmodified _GVFGGPYP_ 0 0 0 nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 397.1956481933594 2 397.197596 792.38064 NaN NaN NaN NaN NaN NaN NaN 72.185 1 68.646 68.146 69.146 -3.5385 0 0 0 0.21486 1 13694 13694 2.8892 0.31174 1 17778 1163 11642 11646 17830 17830 -0.02385516256867959 GVFIILMLLLF 11 Unmodified _GVFIILMLLLF_ 0 0 0 nc|ENSG00000143469|Q8NB59-2|SYT14;nc|ENSG00000143469|Q8NB59|SYT14;ENSG00000143469|ENST00000367019|SYT14;nc|ENSG00000143469|Q8NB59-5|SYT14;nc|ENSG00000143469|Q8NB59-7|SYT14 nc|ENSG00000143469|Q8NB59-2|SYT14 nc|ENSG00000143469|Q8NB59-2|SYT14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 639.4431762695312 2 639.898346 1277.78214 0.42911 0.00027458 -1.112 -0.00071156 -0.68288 -0.00043697 640.4001123893487 163.07 0.13831 157.93 157.85 157.99 -5.1439 5 3 2 0 0 0 0.8912 1 31723 31723 0 0 1 6348100 17779 4492 11643 11647 17831 17831 0.15435886332238624 GVFIKKMTL 9 Unmodified _GVFIKKMTL_ 0 0 0 REV__ENST00000440547.1_1_2:175175288-175175501:-|nuORF REV__ENST00000440547.1_1_2:175175288-175175501:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.2127380371094 3 346.212301 1035.61507 NaN NaN NaN NaN NaN NaN NaN 40.186 1 37.551 37.051 38.051 -2.6348 0 0 0 0.23508 1 7481 7481 0.26902 0 1 + 17780 21706 11644 11648 17832 17832 0.09869038507349615 GVFILEDDDE 10 Unmodified _GVFILEDDDE_ 0 0 0 REV__ZNF280C|p.M335Rfs*9|1|0.02|ENSG00000056277|chrX:130229120-130229121|-/ATCC|frameshift_variant REV__ZNF280C|p.M335Rfs*9|1|0.02|ENSG00000056277|chrX:130229120-130229121|-/ATCC|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3375854492188 2 576.258776 1150.503 0.28377 0.00016353 -0.82183 -0.00047359 -0.53805 -0.00031006 576.258942414664 116.7 0.2817 116.7 116.46 116.74 0 11 7 2 0 0 0 0.86261 1 22959 22959 6.7232 3.1267 1 5518600 + 17781 14122 11645 11649 17833 17833 -0.06623188826620208 GVFILEDDDE 10 Unmodified _GVFILEDDDE_ 0 0 0 REV__ZNF280C|p.M335Rfs*9|1|0.02|ENSG00000056277|chrX:130229120-130229121|-/ATCC|frameshift_variant REV__ZNF280C|p.M335Rfs*9|1|0.02|ENSG00000056277|chrX:130229120-130229121|-/ATCC|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3380126953125 2 576.258776 1150.503 0.43915 0.00025306 0.62517 0.00036026 1.0643 0.00061333 576.7605794500769 118.25 0.2878 113.84 113.68 113.96 -4.4088 12 7 3 0 0 0 0.8888 1 22737 22737 3.9444 2.4625 1 2484100 + 17782 14122 11645 11649 17834 17834 -0.06623188826620208 GVFKPKFQFY 10 Unmodified _GVFKPKFQFY_ 0 0 0 REV__tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 REV__tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7572631835938 2 630.842416 1259.67028 NaN NaN NaN NaN NaN NaN NaN 111.61 1 107.12 106.62 107.62 -4.4915 0 0 0 2.8426 1 21421 21421 0.043787 0.042406 1 + 17783 25223 11646 11650 17835 17835 0.05083168299461249 GVFLFAVLP 9 Unmodified _GVFLFAVLP_ 0 0 0 ENST00000373045.10_1_1:38266560-38266674:+|nuORF ENST00000373045.10_1_1:38266560-38266674:+|nuORF ENST00000373045.10_1_1:38266560-38266674:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7869873046875 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 151.96 1 147.2 146.7 147.7 -4.7523 0 0 0 0.16659 1 30195 30195 28.173 10.038 1 17784 9190 11647 11651 17836 17836 0.08137037804931424 GVFLFAVLP 9 Unmodified _GVFLFAVLP_ 0 0 0 ENST00000373045.10_1_1:38266560-38266674:+|nuORF ENST00000373045.10_1_1:38266560-38266674:+|nuORF ENST00000373045.10_1_1:38266560-38266674:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78717041015625 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 152.18 1 147.43 146.93 147.93 -4.7523 0 0 0 0.20924 1 30237 30237 20.871 5.024 1 17785 9190 11647 11651 17837 17837 0.08137037804931424 GVFLFVVNY 9 Unmodified _GVFLFVVNY_ 0 0 0 REV__nc|ENSG00000174514|Q8N468-2|MFSD4A REV__nc|ENSG00000174514|Q8N468-2|MFSD4A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 353.1956787109375 3 353.195416 1056.56442 NaN NaN NaN NaN NaN NaN NaN 121.36 1 116.67 116.17 117.17 -4.6873 0 0 0 0.23508 1 23299 23299 1.1933 0.12188 1 + 17786 18416 11648 11652 17838 17838 0.03839832453991221 GVFLVRKK 8 Unmodified _GVFLVRKK_ 0 0 0 tr|U7SRZ0|U7SRZ0_FUSNUDUF340domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01478PE=4SV=1 tr|U7SRZ0|U7SRZ0_FUSNUDUF340domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01478PE=4SV=1 tr|U7SRZ0|U7SRZ0_FUSNUDUF340domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01478PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.189697265625 3 316.2114 945.612371 NaN NaN NaN NaN NaN NaN NaN 61.382 1 58.42 57.92 58.92 -2.9614 0 0 0 0.23837 1 11831 11831 0.0082765 0 1 17787 26088 11649 11653 17839 17839 0.1373895116469157 GVFPALGHL 9 Unmodified _GVFPALGHL_ 0 0 0 ENST00000431108.5_1_6:74233390-74234196:+|nuORF ENST00000431108.5_1_6:74233390-74234196:+|nuORF ENST00000431108.5_1_6:74233390-74234196:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.03973388671875 3 304.176356 909.507237 NaN NaN NaN NaN NaN NaN NaN 39.982 1 37.433 36.933 37.933 -2.5491 0 0 0 0.23508 1 7439 7439 1.1933 0.735 1 17788 9781 11650 11654 17840 17840 0.04886409968275984 GVFPALGHL 9 Unmodified _GVFPALGHL_ 0 0 0 ENST00000431108.5_1_6:74233390-74234196:+|nuORF ENST00000431108.5_1_6:74233390-74234196:+|nuORF ENST00000431108.5_1_6:74233390-74234196:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.03485107421875 3 304.176356 909.507237 NaN NaN NaN NaN NaN NaN NaN 26.538 1 24.616 24.116 25.116 -1.9222 0 0 0 0.23508 1 4400 4400 1.1933 0.735 1 17789 9781 11650 11654 17841 17841 0.04886409968275984 GVFPVIMGV 9 Unmodified _GVFPVIMGV_ 0 0 0 REV__ENST00000494993.1_1_15:91475325-91475739:-|nuORF REV__ENST00000494993.1_1_15:91475325-91475739:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2413635253906 2 459.759507 917.50446 NaN NaN NaN NaN NaN NaN NaN 138.25 1 133.41 132.91 133.91 -4.84 0 0 0 0.19697 1 26641 26641 1.2148 0 1 + 17790 22374 11651 11655 17842 17842 0.04240818519122058 GVFQKLIAS 9 Unmodified _GVFQKLIAS_ 0 0 0 nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L nc|ENSG00000124207|P55060-4|CSE1L nc|ENSG00000124207|P55060-4|CSE1L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7873229980469 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 23.808 1 22.255 21.755 22.755 -1.5532 0 0 0 0.23508 1 4124 4124 12.532 2.4576 1 17791 3301 11652 11656 17843 17843 0.07734948311235712 GVFRIRTA 8 Unmodified _GVFRIRTA_ 0 0 0 CLSTN1|p.A884T|1|0.23|ENSG00000171603|chr1:9731304-9731304|C/T|missense_variant CLSTN1|p.A884T|1|0.23|ENSG00000171603|chr1:9731304-9731304|C/T|missense_variant CLSTN1|p.A884T|1|0.23|ENSG00000171603|chr1:9731304-9731304|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2359924316406 2 460.277244 918.539935 NaN NaN NaN NaN NaN NaN NaN 84.921 1 84.921 84.421 85.421 0 0 0 0 0.21486 1 16572 16572 9.3474 3.587 1 17792 586 11653 11657 17844 17844 0.07740617091133117 GVFSLKGR 8 Unmodified _GVFSLKGR_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 432.25164794921875 2 432.25852 862.502486 NaN NaN NaN NaN NaN NaN NaN 29.872 1 27.797 27.297 28.297 -2.0743 0 0 0 0.23749 1 5094 5094 0.0082765 0 1 17793 5126;11929 11654 11658 17845 17845 0.06573525825513116 GVFSYTRLGS 10 Unmodified _GVFSYTRLGS_ 0 0 0 nc|ENSG00000180068|P47883|OR3A4P nc|ENSG00000180068|P47883|OR3A4P nc|ENSG00000180068|P47883|OR3A4P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7842407226562 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 11.816 1 11.816 11.316 12.316 0 0 0 0 0.22588 1 1598 1598 3.2813 0 1 17794 12493 11655 11659 17846 17846 0.011205549548776617 GVFTSPTLLF 10 Unmodified _GVFTSPTLLF_ 0 0 0 ENST00000376334.3_1_9:68455249-68455366:-|nuORF ENST00000376334.3_1_9:68455249-68455366:-|nuORF ENST00000376334.3_1_9:68455249-68455366:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2644653320312 2 541.30005 1080.58555 NaN NaN NaN NaN NaN NaN NaN 91.21 1 87.116 86.616 87.616 -4.0946 0 0 0 2.8426 1 17380 17380 0.20733 0 1 17795 9246 11656 11660 17847 17847 0.04847797762840855 GVFTVKLKKKL 11 Unmodified _GVFTVKLKKKL_ 0 0 0 REV__ENSG00000165338|ENST00000298068|HECTD2 REV__ENSG00000165338|ENST00000298068|HECTD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7716674804688 2 630.923741 1259.83293 NaN NaN NaN NaN NaN NaN NaN 177.84 1 172.93 172.43 173.43 -4.9088 0 0 0 0.22632 1 35470 35470 0 0 1 + 17796 17760 11657 11661 17848 17848 0.2134055170145075 GVFVAEVEDD 10 Unmodified _GVFVAEVEDD_ 0 0 0 nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;DLG5|p.F1661Ifs*9|1|0.12|ENSG00000151208|chr10:77805849-77805850|-/C|frameshift_variant;ENST00000459739.5_1_10:79567604-79581271:-|nuORF nc|ENSG00000151208|Q8TDM6-2|DLG5 nc|ENSG00000151208|Q8TDM6-2|DLG5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2686767578125 2 540.248212 1078.48187 0.29418 0.00015893 0.28045 0.00015151 0.57463 0.00031044 540.2480851300288 98.2 1.1154 93.93 93.463 94.578 -4.2692 66 31 3 0 0 0 0.65405 1 18793 18793 15.847 0 1 4695500 17797 4852 11658 11662 17849 17849 -0.05423154135473851 GVFWDIEN 8 Unmodified _GVFWDIEN_ 0 0 0 ENST00000548216.2_1_16:15724122-15728701:-|nuORF;nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1 ENST00000548216.2_1_16:15724122-15728701:-|nuORF ENST00000548216.2_1_16:15724122-15728701:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25726318359375 2 490.229625 978.444697 NaN NaN NaN NaN NaN NaN NaN 81.592 1 77.753 77.253 78.253 -3.8392 0 0 0 0.22692 1 15493 15493 0.68139 0.054566 1 17798 5744 11659 11663 17850 17850 -0.045387808905843485 GVFWGPWM 8 Unmodified _GVFWGPWM_ 0 0 0 XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26959228515625 2 490.228374 978.442194 0.15155 7.4294E-05 -0.31956 -0.00015666 -0.16801 -8.2364E-05 490.2273683436702 135.94 0.32227 131.04 130.85 131.18 -4.8951 12 8 2 0 0 0 0.88997 1 26134 26134 0.62683 0.50396 1 1206700 17799 26587 11660 11664 17851 17851 -0.04788907829220079 GVFWGPWM 8 Unmodified _GVFWGPWM_ 0 0 0 XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25732421875 2 490.228374 978.442194 NaN NaN NaN NaN NaN NaN NaN 49.07 1 46.063 45.563 46.563 -3.0068 0 0 0 0.22722 1 8993 8993 0.62683 0.50396 1 17800 26587 11660 11664 17852 17852 -0.04788907829220079 GVFWGPWM 8 Unmodified _GVFWGPWM_ 0 0 0 XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26519775390625 2 490.228374 978.442194 NaN NaN NaN NaN NaN NaN NaN 52.996 1 49.901 49.401 50.401 -3.0954 0 0 0 0.22722 1 9791 9791 1.7423 1.6194 1 17801 26587 11660 11664 17853 17853 -0.04788907829220079 GVFYIGTY 8 Unmodified _GVFYIGTY_ 0 0 0 REV__nc|ENSG00000000005|Q9H2S6-2|TNMD REV__nc|ENSG00000000005|Q9H2S6-2|TNMD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22998046875 2 460.231636 918.448719 NaN NaN NaN NaN NaN NaN NaN 29.919 1 27.802 27.302 28.302 -2.1167 0 0 0 0.21323 1 5388 5388 14.582 1.0738 1 + 17802 13817 11661 11665 17854 17854 -0.013766913968538574 GVGAMLAR 8 Unmodified _GVGAMLAR_ 0 0 0 ENST00000586365.5_1_18:47812373-47813998:-|nuORF;ENST00000590901.5_1_18:47812373-47813282:-|nuORF;ENSG00000154832|ENST00000285106|CXXC1;nc|ENSG00000154832|Q9P0U4-2|CXXC1 ENST00000586365.5_1_18:47812373-47813998:-|nuORF ENST00000586365.5_1_18:47812373-47813998:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7171630859375 2 387.718173 773.421793 NaN NaN NaN NaN NaN NaN NaN 42.117 1 42.117 41.617 42.617 0 0 0 0 0.21486 1 7870 7870 10.183 0.83596 1 17803 5027 11662 11666 17855 17855 0.02601921510961347 GVGAVFSL 8 Unmodified _GVGAVFSL_ 0 0 0 MFSD12|p.L256Cfs*30|1|0.38|ENSG00000161091|chr19:3547919-3547919|G/-|frameshift_variant;nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12 MFSD12|p.L256Cfs*30|1|0.38|ENSG00000161091|chr19:3547919-3547919|G/-|frameshift_variant MFSD12|p.L256Cfs*30|1|0.38|ENSG00000161091|chr19:3547919-3547919|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21185302734375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 85.313 1 85.313 84.813 85.813 0 0 0 0 0.22934 1 16651 16651 0.62683 0 1 17804 5284 11663 11667 17856 17856 0.027670567772474897 GVGDAAAA 8 Unmodified _GVGDAAAA_ 0 0 0 ENSG00000181656|ENST00000315033|GPR88 ENSG00000181656|ENST00000315033|GPR88 ENSG00000181656|ENST00000315033|GPR88 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7695922851562 1 631.304581 630.297304 0.57729 0.00036445 -0.82039 -0.00051791 -0.2431 -0.00015347 631.3080325220768 148.61 0.133 143.55 143.5 143.64 -5.0595 5 3 2 0 0 0 0.89951 1 28801 28801 0 0 1 1211700 17805 6733 11664 11668 17857 17857 -0.03263252704732622 GVGEERPVK 9 Unmodified _GVGEERPVK_ 0 0 0 ENSG00000198142|ENST00000356454|SOWAHC ENSG00000198142|ENST00000356454|SOWAHC ENSG00000198142|ENST00000356454|SOWAHC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.14453125 3 324.182058 969.524344 NaN NaN NaN NaN NaN NaN NaN 71.118 1 71.118 70.618 71.618 0 0 0 0 0.23508 1 13775 13775 1.0715 0.29493 1 17806 7433 11665 11669 17858 17858 0.03836285783427229 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 82.043 1 82.043 81.543 82.543 0 0 0 0 0.23508 1 15981 15981 2.7352 1.0826 1 17807 11653 11666 11670 17859 17859 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 91.055 1 91.055 90.555 91.555 0 0 0 0 0.23508 1 17790 17790 1.0715 0 1 17808 11653 11666 11670 17860 17860 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16534423828125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 64.753 1 61.713 61.213 62.213 -3.0402 0 0 0 0.23508 1 12525 12525 2.7352 0 1 17809 11653 11666 11670 17861 17861 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1717529296875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 66.944 1 63.836 63.336 64.336 -3.1086 0 0 0 0.23508 1 12980 12980 2.7352 1.0826 1 17810 11653 11666 11670 17862 17862 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 67.404 1 64.295 63.795 64.795 -3.1086 0 0 0 0.23508 1 13073 13073 2.7352 1.0826 1 17811 11653 11666 11670 17863 17863 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 67.635 1 64.526 64.026 65.026 -3.1086 0 0 0 0.23508 1 13120 13120 2.7352 0.89096 1 17812 11653 11666 11670 17864 17864 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 68.741 1 65.562 65.062 66.062 -3.1796 0 0 0 0.23508 1 13356 13356 2.7352 0.89096 1 17813 11653 11666 11670 17865 17865 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1651306152344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 70.68 1 67.431 66.931 67.931 -3.2492 0 0 0 0.23508 1 13757 13757 2.7352 1.0826 1 17814 11653 11666 11670 17866 17866 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.426 1 71.062 70.562 71.562 -3.3643 0 0 0 0.23508 1 14518 14518 2.7352 0.89096 1 17815 11653 11666 11670 17867 17867 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 78.511 1 75.048 74.548 75.548 -3.4633 0 0 0 0.23508 1 15328 15328 2.7352 0 1 17816 11653 11666 11670 17868 17868 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 81.165 1 77.608 77.108 78.108 -3.557 0 0 0 0.19638 1 15848 15848 0.073264 0 1 17817 11653 11666 11670 17869 17869 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 81.603 1 78.046 77.546 78.546 -3.557 0 0 0 0.19638 1 15941 15941 0.073264 0 1 17818 11653 11666 11670 17870 17870 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 81.862 1 78.305 77.805 78.805 -3.557 0 0 0 0.23508 1 15994 15994 2.7352 1.0826 1 17819 11653 11666 11670 17871 17871 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 82.707 1 79.099 78.599 79.599 -3.6079 0 0 0 0.23508 1 16162 16162 2.7352 1.0826 1 17820 11653 11666 11670 17872 17872 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 83.404 1 79.796 79.296 80.296 -3.6079 0 0 0 0.19638 1 16304 16304 0.073264 0 1 17821 11653 11666 11670 17873 17873 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16015625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 84.616 1 80.952 80.452 81.452 -3.6641 0 0 0 0.23508 1 16540 16540 2.7352 0 1 17822 11653 11666 11670 17874 17874 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1644592285156 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 84.892 1 81.227 80.727 81.727 -3.6641 0 0 0 0.19638 1 16592 16592 0.073264 0 1 17823 11653 11666 11670 17875 17875 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1640319824219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 85.136 1 81.472 80.972 81.972 -3.6641 0 0 0 0.19638 1 16643 16643 0.073264 0 1 17824 11653 11666 11670 17876 17876 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 85.386 1 81.722 81.222 82.222 -3.6641 0 0 0 0.23508 1 16693 16693 2.7352 0.89096 1 17825 11653 11666 11670 17877 17877 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 85.663 1 81.999 81.499 82.499 -3.6641 0 0 0 0.23508 1 16746 16746 2.4985 0.65425 1 17826 11653 11666 11670 17878 17878 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 86.159 1 82.432 81.932 82.932 -3.727 0 0 0 0.19638 1 16841 16841 0.073264 0 1 17827 11653 11666 11670 17879 17879 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1698913574219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 87.405 1 83.678 83.178 84.178 -3.727 0 0 0 0.23508 1 17090 17090 2.7352 0 1 17828 11653 11666 11670 17880 17880 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 87.503 1 83.776 83.276 84.276 -3.727 0 0 0 0.19638 1 17112 17112 0.073264 0 1 17829 11653 11666 11670 17881 17881 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 87.514 1 83.787 83.287 84.287 -3.727 0 0 0 0.23508 1 17114 17114 2.7352 0.89096 1 17830 11653 11666 11670 17882 17882 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1697692871094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 87.947 1 84.154 83.654 84.654 -3.7926 0 0 0 0.19638 1 17199 17199 0.073264 0 1 17831 11653 11666 11670 17883 17883 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 100.27 1 96.113 95.613 96.613 -4.1594 0 0 0 0.23508 1 19705 19705 2.7352 1.0826 1 17832 11653 11666 11670 17884 17884 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 127.16 1 122.54 122.04 123.04 -4.6172 0 0 0 0.23508 1 25075 25075 0.96228 0 1 17833 11653 11666 11670 17885 17885 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 127.39 1 122.78 122.28 123.28 -4.6172 0 0 0 0.19638 1 25123 25123 0.073264 0 1 17834 11653 11666 11670 17886 17886 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 81.277 1 77.438 76.938 77.938 -3.8392 0 0 0 0.19638 1 15428 15428 0.073264 0 1 17835 11653 11666 11670 17887 17887 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 83.358 1 79.484 78.984 79.984 -3.8736 0 0 0 0.19638 1 15833 15833 0.073264 0 1 17836 11653 11666 11670 17888 17888 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 83.854 1 79.945 79.445 80.445 -3.9093 0 0 0 0.23508 1 15933 15933 2.7352 1.0826 1 17837 11653 11666 11670 17889 17889 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 85.468 1 81.559 81.059 82.059 -3.9093 0 0 0 0.19638 1 16256 16256 0.073264 0 1 17838 11653 11666 11670 17890 17890 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1653137207031 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 87.561 1 83.565 83.065 84.065 -3.9953 0 0 0 0.19638 1 16677 16677 0.073264 0 1 17839 11653 11666 11670 17891 17891 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646423339844 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 87.8 1 83.805 83.305 84.305 -3.9953 0 0 0 0.23508 1 16720 16720 2.7352 0.89096 1 17840 11653 11666 11670 17892 17892 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1651611328125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 90.495 1 86.45 85.95 86.95 -4.0443 0 0 0 0.19638 1 17238 17238 0.073264 0 1 17841 11653 11666 11670 17893 17893 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1706848144531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 90.904 1 86.81 86.31 87.31 -4.0946 0 0 0 0.23508 1 17320 17320 1.0715 0 1 17842 11653 11666 11670 17894 17894 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 90.985 1 86.89 86.39 87.39 -4.0946 0 0 0 0.23508 1 17335 17335 1.0715 0 1 17843 11653 11666 11670 17895 17895 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 126.76 1 121.97 121.47 122.47 -4.7958 0 0 0 0.23508 1 24330 24330 1.0715 0 1 17844 11653 11666 11670 17896 17896 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 78.258 1 74.599 74.099 75.099 -3.6588 0 0 0 0.23508 1 14908 14908 2.7352 1.0826 1 17845 11653 11666 11670 17897 17897 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1653747558594 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 83.132 1 79.434 78.934 79.934 -3.6985 0 0 0 0.23508 1 15864 15864 2.7352 1.0826 1 17846 11653 11666 11670 17898 17898 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 84.17 1 80.458 79.958 80.958 -3.7117 0 0 0 0.19638 1 16073 16073 0.073264 0 1 17847 11653 11666 11670 17899 17899 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 84.418 1 80.706 80.206 81.206 -3.7117 0 0 0 0.23508 1 16124 16124 2.7352 0 1 17848 11653 11666 11670 17900 17900 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 84.644 1 80.932 80.432 81.432 -3.7117 0 0 0 0.19638 1 16169 16169 0.073264 0 1 17849 11653 11666 11670 17901 17901 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 85.533 1 81.821 81.321 82.321 -3.7117 0 0 0 0.19638 1 16341 16341 0.073264 0 1 17850 11653 11666 11670 17902 17902 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 85.545 1 81.833 81.333 82.333 -3.7117 0 0 0 0.23508 1 16343 16343 2.7352 1.0826 1 17851 11653 11666 11670 17903 17903 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 103.94 1 99.89 99.39 100.39 -4.0543 0 0 0 0.23508 1 19987 19987 1.0715 0 1 17852 11653 11666 11670 17904 17904 0.003546936318684857 GVGFIYSSV 9 Unmodified _GVGFIYSSV_ 0 0 0 ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENST00000594346.1_1_13:99098688-99099072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 106.59 1 102.5 102 103 -4.0913 0 0 0 0.19638 1 20496 20496 0.073264 0 1 17853 11653 11666 11670 17905 17905 0.003546936318684857 GVGGAGARPVS 11 Unmodified _GVGGAGARPVS_ 0 0 0 ENST00000545797.6_1_19:3958855-3959008:-|nuORF ENST00000545797.6_1_19:3958855-3959008:-|nuORF ENST00000545797.6_1_19:3958855-3959008:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 464.2536315917969 2 464.253966 926.493378 NaN NaN NaN NaN NaN NaN NaN 140.71 1 136.06 135.56 136.56 -4.6493 0 0 0 0.22632 1 27783 27783 1.4074 0.99917 1 17854 11123 11667 11671 17906 17906 0.027191324691898444 GVGGGGGGK 9 Unmodified _GVGGGGGGK_ 0 0 0 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant;NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;NUP153|p.S359Ffs*14|1|0.09|ENSG00000124789|chr6:17665380-17665381|-/TAGATAAGAAG|frameshift_variant;NUP153|p.N411Ifs*2|1|0.17|ENSG00000124789|chr6:17662054-17662054|T/-|frameshift_variant;nc|ENSG00000124789|P49790-3|NUP153 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1693115234375 2 323.16937 644.324188 NaN NaN NaN NaN NaN NaN NaN 63.918 1 60.502 60.002 61.002 -3.4158 0 0 0 0.23508 1 11953 11953 0.6015 0.6015 1 17855 3333 11668 11672 17907 17907 -0.01220144093520048 GVGGGGGGK 9 Unmodified _GVGGGGGGK_ 0 0 0 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant;NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;NUP153|p.S359Ffs*14|1|0.09|ENSG00000124789|chr6:17665380-17665381|-/TAGATAAGAAG|frameshift_variant;NUP153|p.N411Ifs*2|1|0.17|ENSG00000124789|chr6:17662054-17662054|T/-|frameshift_variant;nc|ENSG00000124789|P49790-3|NUP153 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1490783691406 2 323.16937 644.324188 NaN NaN NaN NaN NaN NaN NaN 73.581 1 69.904 69.404 70.404 -3.6764 0 0 0 0.23508 1 13905 13905 0.6015 0.6015 1 17856 3333 11668 11672 17908 17908 -0.01220144093520048 GVGGGGGGK 9 Unmodified _GVGGGGGGK_ 0 0 0 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant;NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;NUP153|p.S359Ffs*14|1|0.09|ENSG00000124789|chr6:17665380-17665381|-/TAGATAAGAAG|frameshift_variant;NUP153|p.N411Ifs*2|1|0.17|ENSG00000124789|chr6:17662054-17662054|T/-|frameshift_variant;nc|ENSG00000124789|P49790-3|NUP153 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.168212890625 2 323.16937 644.324188 NaN NaN NaN NaN NaN NaN NaN 73.994 1 70.317 69.817 70.817 -3.6764 0 0 0 0.23508 1 13993 13993 0.6015 0.6015 1 17857 3333 11668 11672 17909 17909 -0.01220144093520048 GVGGGGGGK 9 Unmodified _GVGGGGGGK_ 0 0 0 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant;NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;NUP153|p.S359Ffs*14|1|0.09|ENSG00000124789|chr6:17665380-17665381|-/TAGATAAGAAG|frameshift_variant;NUP153|p.N411Ifs*2|1|0.17|ENSG00000124789|chr6:17662054-17662054|T/-|frameshift_variant;nc|ENSG00000124789|P49790-3|NUP153 NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1693420410156 2 323.16937 644.324188 NaN NaN NaN NaN NaN NaN NaN 63.871 1 60.614 60.114 61.114 -3.2567 0 0 0 0.23508 1 11985 11985 0.6015 0.6015 1 17858 3333 11668 11672 17910 17910 -0.01220144093520048 GVGGGVKG 8 Unmodified _GVGGGVKG_ 0 0 0 REV__ENST00000392547.6_1_2:175427025-175427217:-|nuORF REV__ENST00000392547.6_1_2:175427025-175427217:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7568969726562 1 630.356951 629.349674 0.7214 0.00045474 3.7185 0.002344 4.4399 0.0027987 630.3553416645814 116.49 0.10657 112.13 112.06 112.16 -4.3585 4 2 2 0 0 0 0.89712 1 22424 22424 0.12286 0 1 476200 + 17859 21221 11669 11673 17911 17911 0.020173304289073712 GVGGKKGS 8 Unmodified _GVGGKKGS_ 0 0 0 ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 ENST00000485075.1_1_15:78562865-78566840:+|nuORF ENST00000485075.1_1_15:78562865-78566840:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.2399597167969 2 345.20067 688.386788 NaN NaN NaN NaN NaN NaN NaN 95.083 1 91.033 90.533 91.533 -4.0496 0 0 0 0.23749 1 18635 18635 0.0082765 0 1 17860 4298 11670 11674 17912 17912 0.03013001974670715 GVGGNNGG 8 Unmodified _GVGGNNGG_ 0 0 0 ENSG00000185591|ENST00000327443|SP1;nc|ENSG00000185591|P08047-2|SP1;nc|ENSG00000185591|P08047-3|SP1 ENSG00000185591|ENST00000327443|SP1 ENSG00000185591|ENST00000327443|SP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.757568359375 1 631.279429 630.272152 0.41205 0.00026012 -2.5678 -0.001621 -2.1558 -0.0013609 631.2755768488913 162.98 0.38425 162.98 162.76 163.14 0 16 10 3 0 0 0 1.028 1 32754 32754 0.79363 0.26887 1 15614000 17861 7001 11671 11675 17913 17913 -0.05777307507275964 GVGGNNGG 8 Unmodified _GVGGNNGG_ 0 0 0 ENSG00000185591|ENST00000327443|SP1;nc|ENSG00000185591|P08047-2|SP1;nc|ENSG00000185591|P08047-3|SP1 ENSG00000185591|ENST00000327443|SP1 ENSG00000185591|ENST00000327443|SP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7551879882812 1 631.279429 630.272152 0.54603 0.0003447 4.3587 0.0027516 4.9047 0.0030963 631.2815533573437 145.21 0.17296 140.26 140.14 140.31 -4.9445 5 4 2 0 0 0 1.028 1 28043 28043 0.69038 0.088878 1 862400 17862 7001 11671 11675 17914 17914 -0.05777307507275964 GVGGRTLP 8 Unmodified _GVGGRTLP_ 0 0 0 REV__SLC28A2|p.D48Mfs*52|1|0.38|ENSG00000137860|chr15:45253488-45253488|G/-|frameshift_variant REV__SLC28A2|p.D48Mfs*52|1|0.38|ENSG00000137860|chr15:45253488-45253488|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.19683837890625 2 378.72177 755.428987 0.30211 0.00011442 -0.29176 -0.0001105 0.010354 3.9212E-06 378.7216480295443 30.051 0.48436 27.934 27.634 28.119 -2.1167 22 13 2 0 0 0 0.86208 1 5392 5392 1.7423 0 1 655200 + 17863 24636 11672 11676 17915 17915 0.04148977383033525 GVGGVPPS 8 Unmodified _GVGGVPPS_ 0 0 0 ENST00000162391.7_1_12:8186139-8186325:+|nuORF ENST00000162391.7_1_12:8186139-8186325:+|nuORF ENST00000162391.7_1_12:8186139-8186325:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 335.1825866699219 2 335.181946 668.34934 NaN NaN NaN NaN NaN NaN NaN 35.915 1 33.522 33.022 34.022 -2.3938 0 0 0 0.23366 1 6624 6624 0.12286 0 1 17864 8076 11673 11677 17916 17916 0.0018991070904803564 GVGIAFLKLI 10 Unmodified _GVGIAFLKLI_ 0 0 0 tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.1638488769531 3 344.226827 1029.65865 NaN NaN NaN NaN NaN NaN NaN 29.208 1 27.211 26.711 27.711 -1.9962 0 0 0 2.8426 1 4958 4958 0.0013812 0 1 17865 26421 11674 11678 17917 17917 0.14500971276129349 GVGITAKNPN 10 Unmodified _GVGITAKNPN_ 0 0 0 REV__nc|ENSG00000068308|Q96G74-2|OTUD5 REV__nc|ENSG00000068308|Q96G74-2|OTUD5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1867370605469 3 324.182058 969.524344 NaN NaN NaN NaN NaN NaN NaN 71.678 1 71.678 71.178 72.178 0 0 0 0 0.22588 1 13889 13889 0.77653 0.31819 1 + 17866 14225 11675 11679 17918 17918 0.038362857834158604 GVGITAKNPN 10 Unmodified _GVGITAKNPN_ 0 0 0 REV__nc|ENSG00000068308|Q96G74-2|OTUD5 REV__nc|ENSG00000068308|Q96G74-2|OTUD5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1450500488281 3 324.182058 969.524344 NaN NaN NaN NaN NaN NaN NaN 71.693 1 71.693 71.193 72.193 0 0 0 0 0.22588 1 13893 13893 0.77653 0.31819 1 + 17867 14225 11675 11679 17919 17919 0.038362857834158604 GVGKAALC 8 Unmodified _GVGKAALC_ 0 0 0 REV__ENST00000261497.8_1_17:20905216-20905390:-|nuORF REV__ENST00000261497.8_1_17:20905216-20905390:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2001953125 2 359.699449 717.384345 -0.69566 -0.00025023 0.67293 0.00024205 -0.022738 -8.1788E-06 359.69960446080364 42.765 0.34358 40.159 40.004 40.348 -2.606 12 9 2 0 0 0 1.0268 1 7715 7715 0.79363 0 1 482920 + 17868 20181 11676 11680 17920 17920 0.014348302453413453 GVGKLLKKK 9 Unmodified _GVGKLLKKK_ 0 0 0 ENST00000261712.7_1_17:30807923-30808019:+|nuORF ENST00000261712.7_1_17:30807923-30808019:+|nuORF ENST00000261712.7_1_17:30807923-30808019:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.19921875 3 324.230572 969.669886 NaN NaN NaN NaN NaN NaN NaN 13.314 1 13.314 12.814 13.814 0 0 0 0 0.1963 1 1914 1914 0 0 1 17869 8304 11677 11681 17921 17921 0.1838379337027618 GVGKSLHRARA 11 Unmodified _GVGKSLHRARA_ 0 0 0 nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;KALRN|p.D854Tfs*33|1|0.3|ENSG00000160145|chr3:124422830-124422830|A/-|frameshift_variant;nc|ENSG00000160145|O60229|KALRN;nc|ENSG00000160145|O60229-2|KALRN;ENSG00000160145|ENST00000682506|KALRN nc|ENSG00000038382|O75962-4|TRIO;nc|ENSG00000160145|O60229|KALRN nc|ENSG00000038382|O75962-4|TRIO MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3255615234375 2 576.341438 1150.66832 NaN NaN NaN NaN NaN NaN NaN 132.45 1 132.45 131.95 132.95 0 0 0 0 0.23429 1 26185 26185 4.897 0.56777 1 17870 1182;12404 11678 11682 17922 17922 0.0990155233423593 GVGKTQLVRA 10 Unmodified _GVGKTQLVRA_ 0 0 0 SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant;nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-3|AFG2B SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.8858947753906 3 343.545219 1027.61383 -0.29527 -0.00010144 1.0921 0.00037518 0.79681 0.00027374 343.54545033321176 25.48 0.72552 25.48 25.153 25.879 0 26 20 2 0 0 0 0.53264 1 4469 4469 0 0 1 3620300 17871 6166 11679 11683 17923 17923 0.10112540462819197 GVGKTQLVRA 10 Unmodified _GVGKTQLVRA_ 0 0 0 SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant;nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-3|AFG2B SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 343.545219 1027.61383 0.19128 6.5713E-05 0.46246 0.00015888 0.65374 0.00022459 343.5453337883329 27.086 0.91245 25.451 25.072 25.984 -1.6347 0.034608 4.2735E-05 NaN 0 44 25 2 NaN NaN NaN NaN 0 NaN NaN 0 5328600 17872 6166 11679 11683 0.10112540462819197 GVGKTQLVRA 10 Unmodified _GVGKTQLVRA_ 0 0 0 SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant;nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-3|AFG2B SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 343.545219 1027.61383 -0.52956 -0.00018193 0.60443 0.00020765 0.074863 2.5719E-05 343.54549170770997 27.278 0.84212 25.356 24.984 25.826 -1.9222 -0.06068 0.00018905 NaN 0 42 23 2 NaN NaN NaN NaN 0 NaN NaN 0 4390900 17873 6166 11679 11683 0.10112540462819197 GVGKTTLARY 10 Unmodified _GVGKTTLARY_ 0 0 0 nc|ENSG00000155085|Q5TCS8-3|AK9;AK9|p.R1209Gfs*39|2|0.33|ENSG00000155085|chr6:109529019-109529019|T/-|frameshift_variant;nc|ENSG00000155085|Q5TCS8-6|AK9;ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-1|AK9;AK9|p.N136Kfs*7|1|0.08|ENSG00000155085|chr6:109662587-109662588|-/T|frameshift_variant;nc|ENSG00000155085|Q5TCS8-2|AK9 nc|ENSG00000155085|Q5TCS8-3|AK9 nc|ENSG00000155085|Q5TCS8-3|AK9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2842407226562 2 533.306198 1064.59784 NaN NaN NaN NaN NaN NaN NaN 150.99 1 145.81 145.31 146.31 -5.1759 0 0 0 0.22588 1 29267 29267 9.3831 1.2276 1 17874 109 11680 11684 17924 17924 0.06812834225888764 GVGLAFVTFLK 11 Unmodified _GVGLAFVTFLK_ 0 0 0 REV__ENST00000513957.1_1_15:56216842-56258681:-|nuORF REV__ENST00000513957.1_1_15:56216842-56258681:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3208618164062 2 576.344792 1150.67503 NaN NaN NaN NaN NaN NaN NaN 155.4 1 155.4 154.9 155.9 0 0 0 0 0.22632 1 31155 31155 0.026206 0.025642 1 + 17875 22573 11681 11685 17925 17925 0.10572052442216773 GVGNTEAAC 9 Unmodified _GVGNTEAAC_ 0 0 0 REV__KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant REV__KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.11627197265625 2 411.176535 820.338517 -0.1501 -6.1716E-05 -0.23405 -9.6237E-05 -0.38415 -0.00015795 411.1764228089324 64.723 0.6909 61.725 61.397 62.088 -2.9975 32 19 2 0 0 0 0.79297 1 12463 12463 2.0598 0 1 1921800 + 17876 17532 11682 11686 17926 17926 -0.078838597275535 GVGNTEAAC 9 Unmodified _GVGNTEAAC_ 0 0 0 REV__KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant REV__KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 411.176535 820.338517 -0.28481 -0.00011711 -0.25801 -0.00010609 -0.54282 -0.0002232 411.1763989415257 61.853 0.71476 61.853 61.597 62.312 0 0.074513 1.7402E-05 NaN 2.0598 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2505900 + 17877 17532 11682 11686 -0.078838597275535 GVGNTEAAC 9 Unmodified _GVGNTEAAC_ 0 0 0 REV__KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant REV__KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 411.176535 820.338517 0.20455 8.4106E-05 -0.44494 -0.00018295 -0.24039 -9.8841E-05 411.1763229751862 65.198 0.66833 61.74 61.471 62.139 -3.4581 -0.038296 -0.00013631 NaN 2.0598 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1322800 + 17878 17532 11682 11686 -0.078838597275535 GVGNTEAAC 9 Unmodified _GVGNTEAAC_ 0 0 0 REV__KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant REV__KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 411.176535 820.338517 -0.11331 -4.6592E-05 -0.18087 -7.4368E-05 -0.29418 -0.00012096 411.1764008059988 65.078 0.60945 61.795 61.487 62.096 -3.2832 0.01675 8.0845E-05 NaN 2.0598 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1174900 + 17879 17532 11682 11686 -0.078838597275535 GVGNTVKS 8 Unmodified _GVGNTVKS_ 0 0 0 REV__nc|ENSG00000156471|P48651-2|PTDSS1 REV__nc|ENSG00000156471|P48651-2|PTDSS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2107238769531 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 26.245 1 24.61 24.11 25.11 -1.6347 0 0 0 0.23782 1 4345 4345 0.12286 0.12286 1 + 17880 17259 11683 11687 17927 17927 0.018129672835243582 GVGPLKEILE 10 Unmodified _GVGPLKEILE_ 0 0 0 tr|U7SQZ5|U7SQZ5_FUSNUTwo-componentsystem,NtrCfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01729PE=4SV=1 tr|U7SQZ5|U7SQZ5_FUSNUTwo-componentsystem,NtrCfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01729PE=4SV=1 tr|U7SQZ5|U7SQZ5_FUSNUTwo-componentsystem,NtrCfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01729PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 352.2106628417969 3 352.209613 1053.60701 NaN NaN NaN NaN NaN NaN NaN 54.528 1 51.644 51.144 52.144 -2.8837 0 0 0 2.8426 1 10410 10410 0.26539 0 1 17881 26072 11684 11688 17928 17928 0.08235182791554507 GVGPPCNENE 10 Unmodified _GVGPPCNENE_ 0 0 0 REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.1426696777344 3 339.143163 1014.40766 NaN NaN NaN NaN NaN NaN NaN 101.02 1 101.02 100.52 101.52 0 0 0 0 0.22588 1 19821 19821 0.77653 0.31819 1 + 17882 19302 11685 11689 17929 17929 -0.09896820498647685 GVGPQVLPWL 10 Unmodified _GVGPQVLPWL_ 0 0 0 ENST00000459703.5_1_6:36709177-36709585:-|nuORF ENST00000459703.5_1_6:36709177-36709585:-|nuORF ENST00000459703.5_1_6:36709177-36709585:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.261474609375 2 533.30821 1064.60187 NaN NaN NaN NaN NaN NaN NaN 125.79 1 125.79 125.29 126.29 0 0 0 0 0.22588 1 24815 24815 10.074 3.3508 1 17883 10047 11686 11690 17930 17930 0.07214923719629951 GVGPVSRAWH 10 Unmodified _GVGPVSRAWH_ 0 0 0 ENST00000419895.3_1_11:112160980-112161142:+|nuORF ENST00000419895.3_1_11:112160980-112161142:+|nuORF ENST00000419895.3_1_11:112160980-112161142:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2816162109375 2 533.283057 1064.55156 NaN NaN NaN NaN NaN NaN NaN 145.77 1 140.77 140.27 141.27 -5 0 0 0 0.22588 1 28195 28195 10.824 1.4765 1 17884 9652 11687 11691 17931 17931 0.021868141144750552 GVGQLHKINI 10 Unmodified _GVGQLHKINI_ 0 0 0 REV__FAM81B|p.K315Nfs*18|2|0.35|ENSG00000153347|chr5:95446608-95446608|A/-|frameshift_variant REV__FAM81B|p.K315Nfs*18|2|0.35|ENSG00000153347|chr5:95446608-95446608|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21661376953125 3 360.217102 1077.62948 NaN NaN NaN NaN NaN NaN NaN 143.87 1 143.87 143.37 144.37 0 0 0 0 0.22588 1 28724 28724 0.69767 0.29695 1 + 17885 17147 11688 11692 17932 17932 0.0937682697983746 GVGQRRLPP 9 Unmodified _GVGQRRLPP_ 0 0 0 ENST00000296490.7_1_3:52288756-52288846:-|nuORF ENST00000296490.7_1_3:52288756-52288846:-|nuORF ENST00000296490.7_1_3:52288756-52288846:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2648010253906 2 490.293425 978.572297 NaN NaN NaN NaN NaN NaN NaN 60.056 1 60.056 59.556 60.556 0 0 0 0 0.19634 1 11512 11512 0.073264 0 1 17886 8509 11689 11693 17933 17933 0.08215404494126233 GVGRCAQA 8 Unmodified _GVGRCAQA_ 0 0 0 ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000394133.2_1_10:95043842-95044274:-|nuORF ENST00000582935.1_1_18:47016781-47017264:-|nuORF ENST00000582935.1_1_18:47016781-47017264:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2171325683594 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 66.173 1 62.677 62.177 63.177 -3.4965 0 0 0 0.23749 1 12398 12398 0.12286 0.049601 1 17887 7977 11690 11694 17934 17934 -0.02476126045564797 GVGRGDGFGM 10 Unmodified _GVGRGDGFGM_ 0 0 0 REV__KRT84|p.A99Gfs*2|1|0.4|ENSG00000161849|chr12:52385290-52385291|-/C|frameshift_variant REV__KRT84|p.A99Gfs*2|1|0.4|ENSG00000161849|chr12:52385290-52385291|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0470886230469 3 318.14836 951.42325 NaN NaN NaN NaN NaN NaN NaN 38.935 1 38.935 38.435 39.435 0 0 0 0 0.22588 1 7224 7224 2.086 0.24177 1 + + 17888 13554 11691 11695 17935 17935 -0.05440489190914377 GVGRKKWK 8 Unmodified _GVGRKKWK_ 0 0 0 ENSG00000136696|ENST00000259213|IL36B ENSG00000136696|ENST00000259213|IL36B ENSG00000136696|ENST00000259213|IL36B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.2663879394531 3 320.203016 957.587219 -2.0962 -0.00067122 0.52125 0.0001669 -1.575 -0.00050431 320.2032152870168 16.753 0.13363 15.399 15.338 15.472 -1.3534 5 3 2 0 0 0 0.88047 1 2396 2396 0.45834 0 1 214170 17889 4028 11692 11696 17936 17936 0.10672896362132178 GVGRSIVY 8 Unmodified _GVGRSIVY_ 0 0 0 ENST00000590378.5_1_19:10197589-10200348:+|nuORF;nc|ENSG00000130813|Q9NUL5-3|SHFL;ENST00000592551.5_1_19:10196860-10198099:+|nuORF;ENST00000585919.5_1_19:10197010-10202030:+|nuORF;ENST00000397881.7_2_19:10197589-10201972:+|nuORF;nc|ENSG00000130813|Q9NUL5-4|SHFL;ENSG00000130813|ENST00000253110|SHFL ENST00000590378.5_1_19:10197589-10200348:+|nuORF ENST00000590378.5_1_19:10197589-10200348:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2539367675781 2 425.742702 849.470852 0.30024 0.00012782 0.019664 8.3716E-06 0.3199 0.00013619 425.7426893511155 30.222 0.48988 28.329 28.171 28.661 -1.8928 21 13 2 0 0 0 0.97173 1 5219 5219 7.9102 0 1 1292300 17890 3640 11693 11697 17937 17937 0.04009533071575788 GVGSATGATLQ 11 Unmodified _GVGSATGATLQ_ 0 0 0 REV__ENSG00000144119|ENST00000272520|C1QL2 REV__ENSG00000144119|ENST00000272520|C1QL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2474060058594 2 481.251089 960.487624 -0.20207 -9.7244E-05 -1.0036 -0.00048299 -1.2057 -0.00058023 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 0.64855 1 7345 7345 15.248 0.41021 1 85144000 + 17891 16770 11694 11698 17938 17938 0.005799891668516466 GVGSGLLL 8 Unmodified _GVGSGLLL_ 0 0 0 REV__nc|ENSG00000105875|A4D1P6-2|WDR91 REV__nc|ENSG00000105875|A4D1P6-2|WDR91 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 358.065673828125 2 358.221072 714.42759 NaN NaN NaN NaN NaN NaN NaN 71.446 1 67.819 67.319 68.319 -3.6275 0 0 0 0.21486 1 13474 13474 2.5775 1.7838 1 + 17892 15022 11695 11699 17939 17939 0.0589534329427579 GVGSTLVS 8 Unmodified _GVGSTLVS_ 0 0 0 REV__PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant REV__PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2020568847656 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 98.331 1 94.375 93.875 94.875 -3.9564 0 0 0 0.21486 1 18873 18873 5.2307 2.6532 1 + 17893 18888 11696 11700 17940 17940 0.015661625349594033 GVGSTLVS 8 Unmodified _GVGSTLVS_ 0 0 0 REV__PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant REV__PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20184326171875 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 98.566 1 94.61 94.11 95.11 -3.9564 0 0 0 0.21486 1 18917 18917 5.2307 2.6532 1 + 17894 18888 11696 11700 17941 17941 0.015661625349594033 GVGTPFSYAVP 11 Unmodified _GVGTPFSYAVP_ 0 0 0 ENSG00000171246|ENST00000306773|NPTX1 ENSG00000171246|ENST00000306773|NPTX1 ENSG00000171246|ENST00000306773|NPTX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7771606445312 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 52.987 1 50.103 49.603 50.603 -2.8837 0 0 0 0.20277 1 10091 10091 18.146 1.9972 1 17895 6132 11697 11701 17942 17942 0.0013803672336507589 GVGVAYAL 8 Unmodified _GVGVAYAL_ 0 0 0 tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1 tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1 tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2077941894531 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 38.466 1 36.024 35.524 36.524 -2.4419 0 0 0 0.21486 1 6846 6846 2.8892 0 1 17896 26021 11698 11702 17943 17943 0.027670567772247523 GVGVDLGRGHD 11 Unmodified _GVGVDLGRGHD_ 0 0 0 ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENST00000575282.5_1_17:78185753-78186503:-|nuORF ENST00000570923.1_1_17:78185753-78194107:-|nuORF ENST00000570923.1_1_17:78185753-78194107:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2715454101562 2 541.272887 1080.53122 NaN NaN NaN NaN NaN NaN NaN 14.692 1 13.481 12.981 13.981 -1.2106 0 0 0 0.23698 1 1967 1967 2.7352 0.67545 1 17897 11418 11699 11703 17944 17944 -0.0058240133598701505 GVGVINEAY 9 Unmodified _GVGVINEAY_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5281677246094 2 461.23745 920.460347 0.044619 2.058E-05 -0.13085 -6.0352E-05 -0.08623 -3.9773E-05 461.23739396862726 95.349 0.61922 95.349 95.042 95.661 0 30 17 2 0 0 0 0.60805 1 18634 18634 12.532 1.7076 1 2425400 + 17898 17221 11700 11704 17945 17945 -0.003064943735239467 GVGVINEAY 9 Unmodified _GVGVINEAY_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.23745 920.460347 -0.05321 -2.4543E-05 -0.0562 -2.5922E-05 -0.10941 -5.0464E-05 461.23736640774683 99.636 0.73221 95.504 95.061 95.793 -4.1326 0.026577 5.2755E-05 NaN 12.532 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 3215700 + 17899 17221 11700 11704 -0.003064943735239467 GVGVINEAY 9 Unmodified _GVGVINEAY_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.23745 920.460347 0.20409 9.4133E-05 -0.13499 -6.2261E-05 0.069101 3.1872E-05 461.2373272005171 99.757 0.71136 95.46 95.14 95.851 -4.297 -0.017621 -1.9924E-05 NaN 12.532 33 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2812900 + 17900 17221 11700 11704 -0.003064943735239467 GVGVINEAY 9 Unmodified _GVGVINEAY_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.23745 920.460347 0.22132 0.00010208 -0.14548 -6.71E-05 0.075845 3.4982E-05 461.2373998685306 99.553 0.65952 95.597 95.172 95.832 -3.9564 0.11975 -2.9602E-05 NaN 12.532 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2973900 + 17901 17221 11700 11704 -0.003064943735239467 GVHAGSQST 9 Unmodified _GVHAGSQST_ 0 0 0 REV__ENSG00000215421|ENST00000299687|ZNF407 REV__ENSG00000215421|ENST00000299687|ZNF407 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 422.19427490234375 2 422.201399 842.388245 NaN NaN NaN NaN NaN NaN NaN 66.95 1 66.95 66.45 67.45 0 0 0 0 0.23508 1 12937 12937 7.9102 0.62092 1 + 17902 19688 11701 11705 17946 17946 -0.0392540872724112 GVHCLYFFLY 10 Unmodified _GVHCLYFFLY_ 0 0 0 REV__ENST00000309469.8_1_19:10663752-10663953:+|nuORF REV__ENST00000309469.8_1_19:10663752-10663953:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7625732421875 2 631.307352 1260.60015 1.1235 0.00070929 1.2577 0.00079399 2.3812 0.0015033 631.308290246192 160.3 0.8083 155.5 155.05 155.86 -4.7952 46 22 3 0 0 0 0.8428 1 31826 31826 18.135 11.412 1 7215800 + 17903 20469 11702 11706 17947 17947 -0.019724533606449768 GVHDCHPG 8 Unmodified _GVHDCHPG_ 0 0 0 ENST00000482536.5_1_6:26384030-26390413:+|nuORF ENST00000482536.5_1_6:26384030-26390413:+|nuORF ENST00000482536.5_1_6:26384030-26390413:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.0946960449219 2 411.171587 820.328621 NaN NaN NaN NaN NaN NaN NaN 27.699 1 27.699 27.199 28.199 0 0 0 0 0.21486 1 4894 4894 2.8892 0 1 17904 10398 11703 11707 17948 17948 -0.08873002942266339 GVHFTCNCS 9 Unmodified _GVHFTCNCS_ 0 0 0 ENSG00000187957|ENST00000341772|DNER ENSG00000187957|ENST00000341772|DNER ENSG00000187957|ENST00000341772|DNER MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1444396972656 3 323.1302 966.368771 NaN NaN NaN NaN NaN NaN NaN 36.694 1 34.357 33.857 34.857 -2.3375 0 0 0 0.23508 1 6480 6480 1.1933 0.735 1 17905 7138 11704 11708 17949 17949 -0.11575824334011031 GVHGALPV 8 Unmodified _GVHGALPV_ 0 0 0 REV__nc|ENSG00000125354|Q14141-3|SEPTIN6 REV__nc|ENSG00000125354|Q14141-3|SEPTIN6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2185974121094 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 40.038 1 40.038 39.538 40.538 0 0 0 0 0.23711 1 7440 7440 0.62683 0.50396 1 + 17906 15809 11705 11709 17950 17950 0.038898788713822796 GVHGALPV 8 Unmodified _GVHGALPV_ 0 0 0 REV__nc|ENSG00000125354|Q14141-3|SEPTIN6 REV__nc|ENSG00000125354|Q14141-3|SEPTIN6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2192077636719 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 42.697 1 39.978 39.478 40.478 -2.7191 0 0 0 0.23294 1 7992 7992 0.62683 0.50396 1 + 17907 15809 11705 11709 17951 17951 0.038898788713822796 GVHGALPV 8 Unmodified _GVHGALPV_ 0 0 0 REV__nc|ENSG00000125354|Q14141-3|SEPTIN6 REV__nc|ENSG00000125354|Q14141-3|SEPTIN6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21905517578125 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 42.805 1 40.154 39.654 40.654 -2.651 0 0 0 0.23711 1 7714 7714 0.62683 0.50396 1 + 17908 15809 11705 11709 17952 17952 0.038898788713822796 GVHIASHLFGI 11 Unmodified _GVHIASHLFGI_ 0 0 0 REV__nc|ENSG00000213439|P0C628|OR5AC1 REV__nc|ENSG00000213439|P0C628|OR5AC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3128051757812 2 575.822015 1149.62948 0.28096 0.00016179 4.0015 0.0023042 4.2825 0.002466 576.3251663250642 119.97 0.59245 115.45 115.26 115.85 -4.5221 18 16 2 0 0 0 0.74417 1 23695 23695 8.7454 0.83525 1 2689800 + 17909 24264 11706 11710 17953 17953 0.060648269798548426 GVHIDKDPV 9 Unmodified _GVHIDKDPV_ 0 0 0 REV__CYP27B1|p.H441Tfs*33|2|0.49|ENSG00000111012|chr12:57763703-57763703|G/-|frameshift_variant REV__CYP27B1|p.H441Tfs*33|2|0.49|ENSG00000111012|chr12:57763703-57763703|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26385498046875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 179.01 1 174.15 173.65 174.65 -4.8686 0 0 0 0.23508 1 35645 35645 2.3027 1.5091 1 + 17910 13625 11707 11711 17954 17954 0.023328834091330464 GVHKKKHK 8 Unmodified _GVHKKKHK_ 0 0 0 ENST00000494986.5_1_2:74682243-74683007:+|nuORF;ENSG00000115274|ENST00000233331|INO80B ENST00000494986.5_1_2:74682243-74683007:+|nuORF ENST00000494986.5_1_2:74682243-74683007:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.1795349121094 3 321.206649 960.598118 NaN NaN NaN NaN NaN NaN NaN 17.523 1 16.212 15.712 16.712 -1.3109 0 0 0 0.21486 1 2810 2810 0.45834 0.057624 1 17911 2839 11708 11712 17955 17955 0.1162429873641031 GVHLAEHS 8 Unmodified _GVHLAEHS_ 0 0 0 nc|ENSG00000093183|Q9BRL7-3|SEC22C;nc|ENSG00000093183|Q9BRL7-2|SEC22C;ENSG00000093183|ENST00000264454|SEC22C nc|ENSG00000093183|Q9BRL7-3|SEC22C nc|ENSG00000093183|Q9BRL7-3|SEC22C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2517395019531 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 66.741 1 63.245 62.745 63.745 -3.4965 0 0 0 0.23294 1 12514 12514 0.063987 0 1 17912 1846 11709 11713 17956 17956 -0.01620514484955038 GVHLAPAL 8 Unmodified _GVHLAPAL_ 0 0 0 ENST00000369784.7_1_1:110884272-110884314:+|nuORF ENST00000369784.7_1_1:110884272-110884314:+|nuORF ENST00000369784.7_1_1:110884272-110884314:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 388.8675537109375 2 389.234513 776.454474 0.1974 7.6836E-05 0.014357 5.5884E-06 0.21176 8.2425E-05 389.2344399442546 77.069 0.76873 77.069 76.658 77.427 0 41 21 3 0 0 0 0.89646 1 15043 15043 0.12286 0 1 3875400 17913 9129 11710 11714 17957 17957 0.05730451905469636 GVHLAPAL 8 Unmodified _GVHLAPAL_ 0 0 0 ENST00000369784.7_1_1:110884272-110884314:+|nuORF ENST00000369784.7_1_1:110884272-110884314:+|nuORF ENST00000369784.7_1_1:110884272-110884314:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 389.234513 776.454474 -0.18536 -7.2148E-05 0.385 0.00014985 0.19964 7.7706E-05 389.23460758180977 80.378 0.73933 76.868 76.51 77.249 -3.5102 -0.038517 0.00010844 NaN 0.12286 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3264900 17914 9129 11710 11714 0.05730451905469636 GVHLAPAL 8 Unmodified _GVHLAPAL_ 0 0 0 ENST00000369784.7_1_1:110884272-110884314:+|nuORF ENST00000369784.7_1_1:110884272-110884314:+|nuORF ENST00000369784.7_1_1:110884272-110884314:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 389.234513 776.454474 -0.025273 -9.837E-06 0.38556 0.00015007 0.36028 0.00014023 389.2345519707992 80.622 0.73106 76.783 76.461 77.192 -3.8392 -0.12349 0.00010887 NaN 0.12286 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2792700 17915 9129 11710 11714 0.05730451905469636 GVHLDRFIS 9 Unmodified _GVHLDRFIS_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2741088867188 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 160.1 1 160.1 159.6 160.6 0 0 0 0 0.18525 1 32147 32147 0.12781 0.054551 1 + 17916 17527 11711 11715 17958 17958 0.03640278537386621 GVHLDRFIS 9 Unmodified _GVHLDRFIS_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2745971679688 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 130.37 1 125.73 125.23 126.23 -4.6359 0 0 0 0.19649 1 25693 25693 0.073264 0 1 + 17917 17527 11711 11715 17959 17959 0.03640278537386621 GVHLDRFIS 9 Unmodified _GVHLDRFIS_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.269287109375 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 152.9 1 147.64 147.14 148.14 -5.2669 0 0 0 0.19649 1 29639 29639 0.073264 0 1 + 17918 17527 11711 11715 17960 17960 0.03640278537386621 GVHLDRFIS 9 Unmodified _GVHLDRFIS_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2719116210938 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 62.377 1 59.138 58.638 59.638 -3.2395 0 0 0 0.19649 1 11694 11694 0.073264 0 1 + 17919 17527 11711 11715 17961 17961 0.03640278537386621 GVHLFQKFVE 10 Unmodified _GVHLFQKFVE_ 0 0 0 ENSG00000171806|ENST00000310392|METTL18 ENSG00000171806|ENST00000310392|METTL18 ENSG00000171806|ENST00000310392|METTL18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2896118164062 2 602.329673 1202.64479 NaN NaN NaN NaN NaN NaN NaN 123.76 1 119.03 118.53 119.53 -4.731 0 0 0 2.8426 1 23771 23771 0.0013812 0 1 17920 6173 11712 11716 17962 17962 0.051576937770278164 GVHLKGKA 8 Unmodified _GVHLKGKA_ 0 0 0 THAP9|p.N850Mfs*7|1|0.4|ENSG00000168152|chr4:82918757-82918757|A/-|frameshift_variant;ENSG00000168152|ENST00000302236|THAP9;THAP9|p.R152Dfs*5|1|0.05|ENSG00000168152|chr4:82906495-82906495|A/-|frameshift_variant;THAP9|p.F341Lfs*2|1|0.33|ENSG00000168152|chr4:82917229-82917229|T/-|frameshift_variant THAP9|p.N850Mfs*7|1|0.4|ENSG00000168152|chr4:82918757-82918757|A/-|frameshift_variant THAP9|p.N850Mfs*7|1|0.4|ENSG00000168152|chr4:82918757-82918757|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.25225830078125 2 405.253237 808.491922 NaN NaN NaN NaN NaN NaN NaN 42.727 1 40.076 39.576 40.576 -2.651 0 0 0 0.21486 1 7700 7700 2.8892 0 1 17921 5886 11713 11717 17963 17963 0.08001543171087633 GVHLKKKSL 9 Unmodified _GVHLKKKSL_ 0 0 0 ENST00000266126.9_1_14:75475951-75476050:+|nuORF ENST00000266126.9_1_14:75475951-75476050:+|nuORF ENST00000266126.9_1_14:75475951-75476050:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.22174072265625 3 337.222076 1008.6444 NaN NaN NaN NaN NaN NaN NaN 20.303 1 18.907 18.407 19.407 -1.3966 0 0 0 0.19623 1 3388 3388 0.0033805 0 1 17922 8372 11714 11718 17964 17964 0.14042318847839397 GVHLNTASED 10 Unmodified _GVHLNTASED_ 0 0 0 ENSG00000184611|ENST00000332142|KCNH7 ENSG00000184611|ENST00000332142|KCNH7 ENSG00000184611|ENST00000332142|KCNH7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2769165039062 2 521.743628 1041.4727 -0.2296 -0.00011979 -1.2963 -0.00067632 -1.5259 -0.00079611 521.7428406251499 81.962 0.48708 78.405 78.236 78.723 -3.557 22 13 2 0 0 0 0.47483 1 16056 16056 0.26539 0 1 2058100 17923 6924 11715 11719 17965 17965 -0.04637502701143603 GVHLQKLSI 9 Unmodified _GVHLQKLSI_ 0 0 0 ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.17022705078125 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 63.64 1 63.64 63.14 64.14 0 0 0 0 0.23508 1 12240 12240 1.1933 0.12188 1 17924 4037 11716 11720 17966 17966 0.10006039576853709 GVHMVSMR 8 Unmodified _GVHMVSMR_ 0 0 0 REV__ENST00000395867.7_3_10:38120565-38120739:-|nuORF REV__ENST00000395867.7_3_10:38120565-38120739:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 306.1544189453125 3 306.154569 915.441877 NaN NaN NaN NaN NaN NaN NaN 180 1 175.1 174.6 175.6 -4.8983 0 0 0 0.21486 1 35877 35877 1.4819 1.0236 1 + 17925 21270 11717 11721 17967 17967 -0.01922650820722538 GVHNGYNL 8 Unmodified _GVHNGYNL_ 0 0 0 REV__tr|U7SMJ0|U7SMJ0_FUSNUAcyl-CoAthioesterhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01888PE=4SV=1 REV__tr|U7SMJ0|U7SMJ0_FUSNUAcyl-CoAthioesterhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01888PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.215087890625 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 126.25 1 121.65 121.15 122.15 -4.5984 0 0 0 0.21486 1 24892 24892 2.8892 0 1 + 17926 24967 11718 11722 17968 17968 -0.027245144849530334 GVHPVGQLR 9 Unmodified _GVHPVGQLR_ 0 0 0 REV__ENST00000485116.5_1_11:124623544-124626668:-|nuORF REV__ENST00000485116.5_1_11:124623544-124626668:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7795104980469 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 155.57 1 150.29 149.79 150.79 -5.2854 0 0 0 0.19684 1 30173 30173 0.12781 0 1 + 17927 17013 11719 11723 17969 17969 0.06343715602804423 GVHRRIEER 9 Unmodified _GVHRRIEER_ 0 0 0 ENST00000268638.9_1_16:85955869-85956031:+|nuORF ENST00000268638.9_1_16:85955869-85956031:+|nuORF ENST00000268638.9_1_16:85955869-85956031:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3231811523438 2 576.323245 1150.63194 NaN NaN NaN NaN NaN NaN NaN 179.13 1 174.22 173.72 174.72 -4.9114 0 0 0 0.23508 1 35741 35741 0.6015 0 1 17928 8390 11720 11724 17970 17970 0.06264675437500955 GVHTGGKPY 9 Unmodified _GVHTGGKPY_ 0 0 0 ZNF45|p.E581G|1|0.3|ENSG00000124459|chr19:43913694-43913694|T/C|missense_variant ZNF45|p.E581G|1|0.3|ENSG00000124459|chr19:43913694-43913694|T/C|missense_variant ZNF45|p.E581G|1|0.3|ENSG00000124459|chr19:43913694-43913694|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23883056640625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 101.45 1 97.459 96.959 97.959 -3.9895 0 0 0 0.23508 1 19492 19492 11.64 3.7301 1 17929 26620 11721 11725 17971 17971 0.00036345066178000707 GVHTTFSFNL 10 Unmodified _GVHTTFSFNL_ 0 0 0 REV__ENST00000605834.1_1_4:185397754-185397856:+|nuORF REV__ENST00000605834.1_1_4:185397754-185397856:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2121887207031 3 374.857463 1121.55056 -0.31879 -0.0001195 0.11226 4.208E-05 -0.20654 -7.7423E-05 374.85753811806944 88.327 1.7064 84.535 84.088 85.794 -3.7926 173 47 5 0 0 0 0.91149 1 17479 17479 3.8763 0.55669 1 361570000 + 17930 23452 11722 11726 17972 17972 -0.005354450451022785 GVHVKKVSCI 10 Unmodified _GVHVKKVSCI_ 0 0 0 nc|ENSG00000100578|Q9BVV6-3|KIAA0586 nc|ENSG00000100578|Q9BVV6-3|KIAA0586 nc|ENSG00000100578|Q9BVV6-3|KIAA0586 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.2033386230469 3 357.211071 1068.61138 NaN NaN NaN NaN NaN NaN NaN 131.36 1 126.72 126.22 127.22 -4.6359 0 0 0 0.22588 1 25887 25887 2.086 0.17963 1 17931 12256 11723 11727 17973 17973 0.07982368733473777 GVHWDQHAH 9 Unmodified _GVHWDQHAH_ 0 0 0 PCED1A|p.G270Afs*21|1|0.08|ENSG00000132635|chr20:2838264-2838264|C/-|frameshift_variant;nc|ENSG00000132635|Q9H1Q7-3|PCED1A;nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000132635|ENST00000360652|PCED1A PCED1A|p.G270Afs*21|1|0.08|ENSG00000132635|chr20:2838264-2838264|C/-|frameshift_variant PCED1A|p.G270Afs*21|1|0.08|ENSG00000132635|chr20:2838264-2838264|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78564453125 2 543.746839 1085.47913 NaN NaN NaN NaN NaN NaN NaN 164.32 1 159.28 158.78 159.78 -5.0446 0 0 0 0.19652 1 32038 32038 0.073264 0.0093988 1 17932 3750 11724 11728 17974 17974 -0.06019519959113495 GVIDGHIYAV 10 Unmodified _GVIDGHIYAV_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279541015625 2 522.279649 1042.54475 0.28345 0.00014804 -0.31558 -0.00016482 -0.032125 -1.6778E-05 522.2794941661693 109.6 0.82435 109.6 109.19 110.02 0 52 23 3 0 0 0 0.075595 3 21545 21545;21574;21591 71.134 45.734 1 7057100 17933 1605 11725 11729 17975;17976;17977 17975 0.025174564432063562 GVIDGHIYAV 10 Unmodified _GVIDGHIYAV_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2796630859375 2 522.279649 1042.54475 -0.30064 -0.00015702 0.63903 0.00033375 0.33839 0.00017673 522.2799256554138 114.13 0.84271 109.66 109.27 110.11 -4.4726 56 23 3 0 0 0 0.32088 3 22496 22444;22496;22553 36.127 17.981 1 6471300 17934 1605 11725 11729 17978;17979;17980 17979 0.025174564432063562 GVIDGHIYAV 10 Unmodified _GVIDGHIYAV_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2797241210938 2 522.279649 1042.54475 -0.56257 -0.00029382 0.92937 0.00048539 0.3668 0.00019157 522.2800981572173 114.21 0.79591 109.65 109.32 110.11 -4.555 53 22 3 0 0 0 0.32088 4 21935 21879;21935;21950;21983 36.127 17.981 1 5619100 17935 1605 11725 11729 17981;17982;17983;17984 17982 0.025174564432063562 GVIDGHIYAV 10 Unmodified _GVIDGHIYAV_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2794189453125 2 522.279649 1042.54475 0.60139 0.00031409 -0.15412 -8.0495E-05 0.44727 0.0002336 522.2795041612344 113.86 0.9714 109.59 109.31 110.28 -4.2725 60 27 3 0 0 0 0.32088 5 21903 21903;21930;21949;21978;22000 36.127 19.978 1 5600400 17936 1605 11725 11729 17985;17986;17987;17988;17989 17985 0.025174564432063562 GVIEMHLY 8 Unmodified _GVIEMHLY_ 0 0 0 REV__ACVR1B|p.H317Y|1|0.35|ENSG00000135503|chr12:51984136-51984136|C/T|missense_variant REV__ACVR1B|p.H317Y|1|0.35|ENSG00000135503|chr12:51984136-51984136|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2442626953125 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 49.421 1 46.414 45.914 46.914 -3.0068 0 0 0 0.23711 1 9068 9068 0.12286 0 1 + 17937 12932 11726 11730 17990 17990 -0.007929598659302428 GVIFIKEPY 9 Unmodified _GVIFIKEPY_ 0 0 0 REV__tr|U7SYC0|U7SYC0_FUSNUIsochorismatase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00962PE=4SV=1 REV__tr|U7SYC0|U7SYC0_FUSNUIsochorismatase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00962PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2760009765625 2 533.302593 1064.59063 NaN NaN NaN NaN NaN NaN NaN 89.064 1 85.271 84.771 85.771 -3.7926 0 0 0 0.19634 1 17426 17426 0.073264 0 1 + 17938 25227 11727 11731 17991 17991 0.060921016254724236 GVIIKQGCLL 10 Unmodified _GVIIKQGCLL_ 0 0 0 PLEK|p.N260Tfs*4|1|0.07|ENSG00000115956|chr2:68393174-68393174|A/-|frameshift_variant;ENSG00000115956|ENST00000234313|PLEK PLEK|p.N260Tfs*4|1|0.07|ENSG00000115956|chr2:68393174-68393174|A/-|frameshift_variant PLEK|p.N260Tfs*4|1|0.07|ENSG00000115956|chr2:68393174-68393174|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2622680664062 2 522.31772 1042.62089 NaN NaN NaN NaN NaN NaN NaN 152.05 1 147.29 146.79 147.79 -4.7523 0 0 0 2.8426 1 30211 30211 0.0013812 0.0013812 1 17939 2896 11728 11732 17992 17992 0.10128137019023598 GVIKFQLGP 9 Unmodified _GVIKFQLGP_ 0 0 0 ENST00000458667.1_1_Y:19688699-19691317:-|nuORF ENST00000458667.1_1_Y:19688699-19691317:-|nuORF ENST00000458667.1_1_Y:19688699-19691317:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.8621826171875 3 320.195527 957.564752 -0.53594 -0.0001716 1.0583 0.00033887 0.52237 0.00016726 320.1959068406363 17.934 0.42562 17.934 17.84 18.266 0 16 11 2 0 0 0 0.884 1 2922 2922 0.26902 0.26902 1 771530 17940 10046 11729 11733 17993 17993 0.08427252173862598 GVIKFQLGP 9 Unmodified _GVIKFQLGP_ 0 0 0 ENST00000458667.1_1_Y:19688699-19691317:-|nuORF ENST00000458667.1_1_Y:19688699-19691317:-|nuORF ENST00000458667.1_1_Y:19688699-19691317:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 320.195527 957.564752 -0.14555 -4.6606E-05 0.9192 0.00029432 0.77364 0.00024772 320.1957498185977 19.458 0.2869 18.061 17.955 18.242 -1.3966 0.063517 -0.00040242 NaN 0.26902 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 396400 17941 10046 11729 11733 0.08427252173862598 GVIKFQLGP 9 Unmodified _GVIKFQLGP_ 0 0 0 ENST00000458667.1_1_Y:19688699-19691317:-|nuORF ENST00000458667.1_1_Y:19688699-19691317:-|nuORF ENST00000458667.1_1_Y:19688699-19691317:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 320.195527 957.564752 -1.6658 -0.00053339 2.2222 0.00071155 0.5564 0.00017816 320.1962458461853 19.633 0.3826 17.998 17.845 18.227 -1.6351 2.1464E-05 0.00084926 NaN 0.26902 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 432050 17942 10046 11729 11733 0.08427252173862598 GVILAPILWP 10 Unmodified _GVILAPILWP_ 0 0 0 REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2159423828125 3 360.226827 1077.65865 NaN NaN NaN NaN NaN NaN NaN 56.899 1 56.899 56.399 57.399 0 0 0 0 0.22588 1 10871 10871 4.1895 0.31317 1 + 17943 25300 11730 11734 17994 17994 0.12292971276133358 GVILAPILWP 10 Unmodified _GVILAPILWP_ 0 0 0 REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2010192871094 3 360.226827 1077.65865 NaN NaN NaN NaN NaN NaN NaN 59.162 1 56.251 55.751 56.751 -2.9105 0 0 0 0.22588 1 11368 11368 4.1895 0.86986 1 + 17944 25300 11730 11734 17995 17995 0.12292971276133358 GVILAPILWP 10 Unmodified _GVILAPILWP_ 0 0 0 REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012634277344 3 360.226827 1077.65865 NaN NaN NaN NaN NaN NaN NaN 59.637 1 56.323 55.823 56.823 -3.3139 0 0 0 0.22588 1 11092 11092 4.1895 1.1172 1 + 17945 25300 11730 11734 17996 17996 0.12292971276133358 GVILAPILWP 10 Unmodified _GVILAPILWP_ 0 0 0 REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2162170410156 3 360.226827 1077.65865 NaN NaN NaN NaN NaN NaN NaN 60.087 1 56.773 56.273 57.273 -3.3139 0 0 0 0.22588 1 11184 11184 4.1895 0.31317 1 + 17946 25300 11730 11734 17997 17997 0.12292971276133358 GVILAPILWP 10 Unmodified _GVILAPILWP_ 0 0 0 REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21624755859375 3 360.226827 1077.65865 NaN NaN NaN NaN NaN NaN NaN 59.835 1 56.611 56.111 57.111 -3.2237 0 0 0 0.22588 1 11185 11185 4.1895 0.31317 1 + 17947 25300 11730 11734 17998 17998 0.12292971276133358 GVILQDAGI 9 Unmodified _GVILQDAGI_ 0 0 0 ENST00000494043.1_1_13:113699020-113708621:+|nuORF ENST00000494043.1_1_13:113699020-113708621:+|nuORF ENST00000494043.1_1_13:113699020-113708621:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 885.3919067382812 1 885.504009 884.496732 0.55556 0.00049195 -0.21074 -0.00018661 0.34482 0.00030534 885.503798604141 125.53 0.87627 120.76 120.34 121.21 -4.7681 57 24 3 0 0 0 0.14832 1 24025 24025 44.407 2.5674 1 11690000 17948 10554 11731 11735 17999 17999 0.049863825231796 GVILSCKRLY 10 Unmodified _GVILSCKRLY_ 0 0 0 TIGD7|p.K426Nfs*16|1|0.44|ENSG00000140993|chr16:3299337-3299337|T/-|frameshift_variant;nc|ENSG00000140993|Q6NT04-2|TIGD7;ENSG00000140993|ENST00000396862|TIGD7 TIGD7|p.K426Nfs*16|1|0.44|ENSG00000140993|chr16:3299337-3299337|T/-|frameshift_variant TIGD7|p.K426Nfs*16|1|0.44|ENSG00000140993|chr16:3299337-3299337|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.322021484375 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 156.09 1 151.31 150.81 151.81 -4.7791 0 0 0 2.8426 1 31035 31035 0.26539 0 1 17949 4339 11732 11736 18000 18000 0.08394924422009353 GVILVLMLL 9 Unmodified _GVILVLMLL_ 0 0 0 DLL1|p.C549Y|1|0.23|ENSG00000198719|chr6:170283633-170283633|C/T|missense_variant;DLL1|p.E586Rfs*5|1|0.32|ENSG00000198719|chr6:170283523-170283523|C/-|frameshift_variant;ENSG00000198719|ENST00000366756|DLL1 DLL1|p.C549Y|1|0.23|ENSG00000198719|chr6:170283633-170283633|C/T|missense_variant DLL1|p.C549Y|1|0.23|ENSG00000198719|chr6:170283633-170283633|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1804504394531 3 324.217163 969.629661 NaN NaN NaN NaN NaN NaN NaN 60.218 1 56.904 56.404 57.404 -3.3139 0 0 0 0.23508 1 11213 11213 1.1933 0 1 17950 848 11733 11737 18001 18001 0.14363110655483524 GVILWPDKWF 10 Unmodified _GVILWPDKWF_ 0 0 0 REV__ENST00000293829.8_1_17:7347478-7347709:+|nuORF REV__ENST00000293829.8_1_17:7347478-7347709:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76318359375 2 630.842416 1259.67028 NaN NaN NaN NaN NaN NaN NaN 108.94 1 104.57 104.07 105.07 -4.3776 0 0 0 0.22588 1 21470 21470 8.1555 0.8663 1 + 17951 20363 11734 11738 18002 18002 0.05083168299461249 GVILYLRLP 9 Unmodified _GVILYLRLP_ 0 0 0 SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant;ENSG00000070915|ENST00000563236|SLC12A3;nc|ENSG00000070915|P55017-3|SLC12A3;nc|ENSG00000070915|P55017-2|SLC12A3 SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2720336914062 2 522.334227 1042.6539 0.20118 0.00010509 -1.8624 -0.00097278 -1.6612 -0.0008677 522.8351826264075 141.26 0.20702 141.26 141.12 141.33 0 6 5 2 0 0 0 0.65257 1 28137 28137 0 0 1 3431500 17952 1441 11735 11739 18003 18003 0.13428087133365807 GVILYSIRI 9 Unmodified _GVILYSIRI_ 0 0 0 GABRD|p.I415Hfs*14|1|0.24|ENSG00000187730|chr1:2030158-2030159|-/G|frameshift_variant;ENSG00000187730|ENST00000378585|GABRD GABRD|p.I415Hfs*14|1|0.24|ENSG00000187730|chr1:2030158-2030159|-/G|frameshift_variant GABRD|p.I415Hfs*14|1|0.24|ENSG00000187730|chr1:2030158-2030159|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.18731689453125 3 345.218332 1032.63317 NaN NaN NaN NaN NaN NaN NaN 66.276 1 63.229 62.729 63.729 -3.047 0 0 0 0.19624 1 12839 12839 0 0 1 17953 7123 11736 11740 18004 18004 0.11815496753706611 GVIPLGLLF 9 Unmodified _GVIPLGLLF_ 0 0 0 nc|ENSG00000103196|Q9H0B8-3|CRISPLD2;ENST00000569262.5_1_16:84853723-84906729:+|nuORF;nc|ENSG00000103196|Q9H0B8-2|CRISPLD2;ENSG00000103196|ENST00000262424|CRISPLD2;nc|ENSG00000103196|Q9H0B8-5|CRISPLD2;nc|ENSG00000103196|Q9H0B8-4|CRISPLD2;ENST00000565561.1_1_16:84853723-84872578:+|nuORF;ENST00000566431.5_1_16:84853723-84896622:+|nuORF nc|ENSG00000103196|Q9H0B8-3|CRISPLD2 nc|ENSG00000103196|Q9H0B8-3|CRISPLD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1708068847656 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 19.541 1 18.216 17.716 18.716 -1.3251 0 0 0 0.23508 1 2984 2984 1.1933 0 1 17954 2173 11737 11741 18005 18005 0.1126532432199383 GVIPRLINAL 10 Unmodified _GVIPRLINAL_ 0 0 0 REV__tr|U7T0I3|U7T0I3_FUSNUEthanolaminetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00831PE=4SV=1 REV__tr|U7T0I3|U7T0I3_FUSNUEthanolaminetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00831PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2764892578125 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 114.5 1 110.18 109.68 110.68 -4.3136 0 0 0 2.8426 1 22050 22050 0.0013812 0 1 + 17955 25272 11738 11742 18006 18006 0.1408658801931324 GVIQEAVEA 9 Unmodified _GVIQEAVEA_ 0 0 0 REV__ENSG00000089101|ENST00000245957|CFAP61 REV__ENSG00000089101|ENST00000245957|CFAP61 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24627685546875 2 458.242732 914.470912 0.18338 8.403E-05 -0.10219 -4.6827E-05 0.081188 3.7204E-05 458.242665784814 93.21 1.4034 89.066 88.557 89.96 -4.1435 116 40 5 0 0 0 0.54354 1 17787 17787 16.942 1.0951 1 108010000 + 17956 14521 11739 11743 18007 18007 0.010254882809022092 GVIRKYTI 8 Unmodified _GVIRKYTI_ 0 0 0 DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant;DSCAML1|p.P2046Qfs*45|1|0.5|ENSG00000177103|chr11:117428533-117428533|G/-|frameshift_variant;ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1 DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1997985839844 3 317.19916 948.575651 NaN NaN NaN NaN NaN NaN NaN 20.814 1 20.814 20.314 21.314 0 0 0 0 0.21486 1 3459 3459 0.45834 0 1 17957 893 11740 11744 18008 18008 0.09930654548145412 GVIRNFIGLY 10 Unmodified _GVIRNFIGLY_ 0 0 0 REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1 REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3286743164062 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 127.93 1 123.23 122.73 123.73 -4.6998 0 0 0 2.8426 1 24614 24614 0.26539 0 1 + 17958 25151 11741 11745 18009 18009 0.08057997639662062 GVIRSLHH 8 Unmodified _GVIRSLHH_ 0 0 0 REV__nc|ENSG00000163793|Q8N7S2-2|DNAJC5G REV__nc|ENSG00000163793|Q8N7S2-2|DNAJC5G MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 307.24835205078125 3 306.847121 917.519533 -0.37194 -0.00011413 -1.1098 -0.00034055 -1.4818 -0.00045468 306.84668437027017 28.354 0.28031 26.358 26.238 26.519 -1.9962 13 7 2 0 0 0 1.0268 1 4768 4768 0.45834 0 1 377460 + 17959 24132 11742 11746 18010 18010 0.05747446431314529 GVIRSLHH 8 Unmodified _GVIRSLHH_ 0 0 0 REV__nc|ENSG00000163793|Q8N7S2-2|DNAJC5G REV__nc|ENSG00000163793|Q8N7S2-2|DNAJC5G MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 306.847121 917.519533 -0.4247 -0.00013032 -1.1769 -0.00036114 -1.6016 -0.00049146 306.84674278560726 26.73 0.41257 26.73 26.495 26.907 0 0.18625 -2.4331E-05 NaN 0.45834 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 680890 + 17960 24132 11742 11746 0.05747446431314529 GVIRTLAAPAL 11 Unmodified _GVIRTLAAPAL_ 0 0 0 REV__nc|ENSG00000178297|Q7Z410|TMPRSS9 REV__nc|ENSG00000178297|Q7Z410|TMPRSS9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2744140625 2 541.340041 1080.66553 NaN NaN NaN NaN NaN NaN NaN 156.37 1 151.09 150.59 151.59 -5.2854 0 0 0 0.22632 1 30337 30337 0.026206 0.025642 1 + 17961 18599 11743 11747 18011 18011 0.1284228415670441 GVISCGSDPP 10 Unmodified _GVISCGSDPP_ 0 0 0 ENST00000491389.1_1_21:48068261-48069756:+|nuORF ENST00000491389.1_1_21:48068261-48069756:+|nuORF ENST00000491389.1_1_21:48068261-48069756:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2325744628906 3 311.144504 930.411682 NaN NaN NaN NaN NaN NaN NaN 42.846 1 42.846 42.346 43.346 0 0 0 0 0.22588 1 8020 8020 0.77653 0.31819 1 17962 10525 11744 11748 18012 18012 -0.05630731004930567 GVISCGSDPP 10 Unmodified _GVISCGSDPP_ 0 0 0 ENST00000491389.1_1_21:48068261-48069756:+|nuORF ENST00000491389.1_1_21:48068261-48069756:+|nuORF ENST00000491389.1_1_21:48068261-48069756:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2218933105469 3 311.144504 930.411682 NaN NaN NaN NaN NaN NaN NaN 27.884 1 25.888 25.388 26.388 -1.9962 0 0 0 0.22588 1 4682 4682 0.77653 0.31819 1 17963 10525 11744 11748 18013 18013 -0.05630731004930567 GVISFGLG 8 Unmodified _GVISFGLG_ 0 0 0 REV__nc|ENSG00000172349|Q14005-2|IL16;REV__nc|ENSG00000107186|O75970-5|MPDZ;REV__ENSG00000132849|ENST00000642238|PATJ REV__nc|ENSG00000107186|O75970-5|MPDZ MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2142639160156 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 177.79 1 177.79 177.29 178.29 0 0 0 0 0.21486 1 36828 36828 2.5775 0 1 + 17964 15077;18284;16137 11745 11749 18014 18014 0.027670567772588583 GVISFGLG 8 Unmodified _GVISFGLG_ 0 0 0 REV__nc|ENSG00000172349|Q14005-2|IL16;REV__nc|ENSG00000107186|O75970-5|MPDZ;REV__ENSG00000132849|ENST00000642238|PATJ REV__nc|ENSG00000107186|O75970-5|MPDZ MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2138671875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 179.2 1 174.33 173.83 174.83 -4.868 0 0 0 0.21486 1 35685 35685 2.5775 0 1 + 17965 15077;18284;16137 11745 11749 18015 18015 0.027670567772588583 GVISFGLG 8 Unmodified _GVISFGLG_ 0 0 0 REV__nc|ENSG00000172349|Q14005-2|IL16;REV__nc|ENSG00000107186|O75970-5|MPDZ;REV__ENSG00000132849|ENST00000642238|PATJ REV__nc|ENSG00000107186|O75970-5|MPDZ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21405029296875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 178.48 1 173.57 173.07 174.07 -4.9088 0 0 0 0.21486 1 35604 35604 2.5775 0 1 + 17966 15077;18284;16137 11745 11749 18016 18016 0.027670567772588583 GVISFKKVY 9 Unmodified _GVISFKKVY_ 0 0 0 REV__nc|ENSG00000136842|P28289-2|TMOD1 REV__nc|ENSG00000136842|P28289-2|TMOD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 521.0908813476562 2 520.810585 1039.60662 -0.24794 -0.00012913 1.0942 0.00056985 0.84622 0.00044072 520.8108781170558 45.982 0.44788 43.141 42.934 43.382 -2.8409 23 12 3 0 0 0 0.88237 1 8682 8682 0.6015 0 1 1527100 + 17967 16354 11746 11750 18017 18017 0.08839807862386806 GVISKKAKVK 10 Unmodified _GVISKKAKVK_ 0 0 0 ENSG00000162086|ENST00000669516|ZNF75A;nc|ENSG00000162086|Q96N20|ZNF75A ENSG00000162086|ENST00000669516|ZNF75A ENSG00000162086|ENST00000669516|ZNF75A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 353.2359313964844 3 353.241248 1056.70191 NaN NaN NaN NaN NaN NaN NaN 12.438 1 11.429 10.929 11.929 -1.0098 0 0 0 0.22588 1 1727 1727 0.15932 0.15932 1 17968 5313 11747 11751 18018 18018 0.1758316105342601 GVISKKAKVK 10 Unmodified _GVISKKAKVK_ 0 0 0 ENSG00000162086|ENST00000669516|ZNF75A;nc|ENSG00000162086|Q96N20|ZNF75A ENSG00000162086|ENST00000669516|ZNF75A ENSG00000162086|ENST00000669516|ZNF75A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 353.2529296875 3 353.241248 1056.70191 NaN NaN NaN NaN NaN NaN NaN 12.663 1 11.654 11.154 12.154 -1.0098 0 0 0 0.22588 1 1779 1779 0.15932 0.15932 1 17969 5313 11747 11751 18019 18019 0.1758316105342601 GVISKKAKVK 10 Unmodified _GVISKKAKVK_ 0 0 0 ENSG00000162086|ENST00000669516|ZNF75A;nc|ENSG00000162086|Q96N20|ZNF75A ENSG00000162086|ENST00000669516|ZNF75A ENSG00000162086|ENST00000669516|ZNF75A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 353.241943359375 3 353.241248 1056.70191 NaN NaN NaN NaN NaN NaN NaN 13.861 1 12.746 12.246 13.246 -1.1142 0 0 0 0.22588 1 2038 2038 0.15932 0.15932 1 17970 5313 11747 11751 18020 18020 0.1758316105342601 GVISKKAKVK 10 Unmodified _GVISKKAKVK_ 0 0 0 ENSG00000162086|ENST00000669516|ZNF75A;nc|ENSG00000162086|Q96N20|ZNF75A ENSG00000162086|ENST00000669516|ZNF75A ENSG00000162086|ENST00000669516|ZNF75A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 353.25390625 3 353.241248 1056.70191 NaN NaN NaN NaN NaN NaN NaN 15.392 1 14.278 13.778 14.778 -1.1142 0 0 0 0.22588 1 2369 2369 0.15932 0.15932 1 17971 5313 11747 11751 18021 18021 0.1758316105342601 GVISLKWEIP 10 Unmodified _GVISLKWEIP_ 0 0 0 REV__ENST00000492522.3_2_17:46783020-46783485:+|nuORF REV__ENST00000492522.3_2_17:46783020-46783485:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2157897949219 3 381.225375 1140.6543 NaN NaN NaN NaN NaN NaN NaN 20.103 1 18.706 18.206 19.206 -1.3966 0 0 0 2.8426 1 3345 3345 0.0013812 0.0008168 1 + 17972 22335 11748 11752 18022 18022 0.08959462062557577 GVITHYNIY 9 Unmodified _GVITHYNIY_ 0 0 0 USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.281494140625 2 540.279649 1078.54475 0.18954 0.0001024 0.20389 0.00011016 0.39343 0.00021256 540.2795599891823 133.88 0.73961 129.24 128.89 129.63 -4.6399 43 20 3 0 0 0 0.57447 1 26398 26398 14.838 0.93222 1 3815500 17973 1204 11749 11753 18023 18023 0.00861456443226416 GVITHYNIY 9 Unmodified _GVITHYNIY_ 0 0 0 USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.279649 1078.54475 0.27619 0.00014922 -0.70198 -0.00037926 -0.42579 -0.00023005 540.2791881125288 129.14 0.55966 129.14 128.77 129.33 0 -0.025581 -0.00042308 NaN 14.838 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2607100 17974 1204 11749 11753 0.00861456443226416 GVITHYNIY 9 Unmodified _GVITHYNIY_ 0 0 0 USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.279649 1078.54475 0.1532 8.2773E-05 -0.5681 -0.00030693 -0.41489 -0.00022416 540.2792677343537 133.99 0.71649 129.11 128.68 129.4 -4.8726 -0.051269 -0.00027841 NaN 14.838 33 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2089600 17975 1204 11749 11753 0.00861456443226416 GVIVIFLIP 9 Unmodified _GVIVIFLIP_ 0 0 0 REV__tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1 REV__tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.17205810546875 3 324.21604 969.62629 NaN NaN NaN NaN NaN NaN NaN 60.57 1 57.347 56.847 57.847 -3.2237 0 0 0 0.23508 1 11330 11330 2.9952 1.8019 1 + 17976 24930 11750 11754 18024 18024 0.14026183873124864 GVIVIFLIP 9 Unmodified _GVIVIFLIP_ 0 0 0 REV__tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1 REV__tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1344299316406 3 324.21604 969.62629 NaN NaN NaN NaN NaN NaN NaN 60.641 1 57.418 56.918 57.918 -3.2237 0 0 0 0.23508 1 11343 11343 2.9952 1.8019 1 + 17977 24930 11750 11754 18025 18025 0.14026183873124864 GVIVKLGPIV 10 Unmodified _GVIVKLGPIV_ 0 0 0 REV__SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant REV__SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 497.8293762207031 2 497.836603 993.658653 NaN NaN NaN NaN NaN NaN NaN 11.629 1 11.629 11.129 12.129 0 0 0 0 0.22588 1 1557 1557 0.45834 0 1 + 17978 18958 11751 11755 18026 18026 0.16156971276132026 GVIWFTWW 8 Unmodified _GVIWFTWW_ 0 0 0 REV__ENST00000407431.5_1_22:26892730-26892817:-|nuORF REV__ENST00000407431.5_1_22:26892730-26892817:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7783203125 2 547.776545 1093.53854 NaN NaN NaN NaN NaN NaN NaN 12.972 1 11.963 11.463 12.463 -1.0098 0 0 0 0.21486 1 1847 1847 0.79363 0 1 + 17979 21394 11752 11756 18027 18027 -0.004490169976179459 GVIYIKRELL 10 Unmodified _GVIYIKRELL_ 0 0 0 REV__ENSG00000167487|ENST00000300976|KLHL26 REV__ENSG00000167487|ENST00000300976|KLHL26 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2849731445312 2 602.376623 1202.73869 NaN NaN NaN NaN NaN NaN NaN 152.94 1 148.17 147.67 148.67 -4.7684 0 0 0 2.8426 1 30391 30391 0.0013812 0 1 + 17980 17929 11753 11757 18028 18028 0.1454341287931129 GVKAGKMY 8 Unmodified _GVKAGKMY_ 0 0 0 REV__ENST00000453426.1_1_6:32813739-32813769:+|nuORF REV__ENST00000453426.1_1_6:32813739-32813769:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.2297058105469 2 427.233656 852.452759 NaN NaN NaN NaN NaN NaN NaN 69.652 1 66.473 65.973 66.973 -3.1796 0 0 0 0.21486 1 13544 13544 2.8892 0 1 + 17981 21829 11754 11758 18029 18029 0.02063074825196054 GVKANPAG 8 Unmodified _GVKANPAG_ 0 0 0 REV__ENSG00000182187|ENST00000260988|CRYGB REV__ENSG00000182187|ENST00000260988|CRYGB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5594787597656 2 357.20067 712.386788 0.765 0.00027326 -0.41655 -0.00014879 0.34845 0.00012447 357.2004644096398 24.69 0.41098 23.042 22.892 23.303 -1.6482 15 11 2 0 0 0 0.73426 1 4330 4330 9.3474 0 1 539370 + 17982 18764 11755 11759 18030 18030 0.01909001974649982 GVKANPAG 8 Unmodified _GVKANPAG_ 0 0 0 REV__ENSG00000182187|ENST00000260988|CRYGB REV__ENSG00000182187|ENST00000260988|CRYGB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5594787597656 2 357.20067 712.386788 0.765 0.00027326 -0.41655 -0.00014879 0.34845 0.00012447 357.2004644096398 24.69 0.41098 23.042 22.892 23.303 -1.6482 15 11 2 0 0 0 0.89712 1 4325 4325 1.7423 1.1154 1 539370 + 17983 18764 11755 11759 18031 18031 0.01909001974649982 GVKAVLAES 9 Unmodified _GVKAVLAES_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2151794433594 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 110.1 1 110.1 109.6 110.6 0 0 0 0 0.23508 1 21652 21652 7.9102 2.6795 1 17984 4008 11756 11760 18032 18032 0.055383825231729134 GVKCEKPCL 9 Unmodified _GVKCEKPCL_ 0 0 0 REV__INSRR|p.L920Cfs*37|2|0.34|ENSG00000027644|chr1:156844261-156844261|C/-|frameshift_variant REV__INSRR|p.L920Cfs*37|2|0.34|ENSG00000027644|chr1:156844261-156844261|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2550048828125 2 488.751356 975.488158 0.20745 0.00010139 -1.2321 -0.0006022 -1.0247 -0.00050081 488.7507332804082 35.659 0.79086 35.659 35.134 35.925 0 62 22 4 0 0 0 0.40602 1 6572 6572 25.399 1.3787 1 19977000 + 17985 23664 11757 11761 18033 18033 -0.0005663070930950198 GVKEKRKQKI 10 Unmodified _GVKEKRKQKI_ 0 0 0 REV__ENST00000551218.1_1_12:94914868-94915450:-|nuORF REV__ENST00000551218.1_1_12:94914868-94915450:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 607.186767578125 2 607.390596 1212.76664 NaN NaN NaN NaN NaN NaN NaN 172.2 1 167.41 166.91 167.91 -4.7898 0 0 0 2.8426 1 35065 35065 0 0 1 + 17986 22932 11758 11762 18034 18034 0.16876735859409564 GVKEQYLK 8 Unmodified _GVKEQYLK_ 0 0 0 REV__ENSG00000185220|ENST00000329291|PGBD2 REV__ENSG00000185220|ENST00000329291|PGBD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.8678283691406 3 322.18692 963.538931 NaN NaN NaN NaN NaN NaN NaN 36.9 1 36.9 36.4 37.4 0 0 0 0 0.21486 1 6811 6811 0.45834 0 1 + 17987 18949 11759 11763 18035 18035 0.05570357931549097 GVKESSSFQL 10 Unmodified _GVKESSSFQL_ 0 0 0 REV__TJP2|p.K38Rfs*105|1|0.44|ENSG00000119139|chr9:69212597-69212597|A/-|frameshift_variant REV__TJP2|p.K38Rfs*105|1|0.44|ENSG00000119139|chr9:69212597-69212597|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2693481445312 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 138.44 1 133.51 133.01 134.01 -4.9292 0 0 0 2.8426 1 26621 26621 0.063865 0.032455 1 + 17988 24806 11760 11764 18036 18036 0.008088313724329055 GVKGHRGY 8 Unmodified _GVKGHRGY_ 0 0 0 COL2A1|p.Q479Rfs*150|1|0.18|ENSG00000139219|chr12:47986428-47986428|G/-|frameshift_variant;COL2A1|p.G741Wfs*29|1|0.36|ENSG00000139219|chr12:47982583-47982584|-/G|frameshift_variant;COL2A1|p.P917Lfs*111|2|0.33|ENSG00000139219|chr12:47978742-47978742|G/-|frameshift_variant;COL2A1|p.P1046Lfs*84|1|0.13|ENSG00000139219|chr12:47977628-47977628|G/-|frameshift_variant;nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1 COL2A1|p.Q479Rfs*150|1|0.18|ENSG00000139219|chr12:47986428-47986428|G/-|frameshift_variant COL2A1|p.Q479Rfs*150|1|0.18|ENSG00000139219|chr12:47986428-47986428|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2280578613281 2 437.238119 872.461684 NaN NaN NaN NaN NaN NaN NaN 100.17 1 95.869 95.369 96.369 -4.297 0 0 0 0.23711 1 19155 19155 0.12286 0.058877 1 17989 626 11761 11765 18037 18037 0.020351845058826257 GVKGKSSS 8 Unmodified _GVKGKSSS_ 0 0 0 REV__ENST00000372486.5_1_9:132397750-132398029:+|nuORF REV__ENST00000372486.5_1_9:132397750-132398029:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.210205078125 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 111 1 106.51 106.01 107.01 -4.4915 0 0 0 0.2396 1 21305 21305 0 0 1 + 17990 21025 11762 11766 18038 18038 0.023649672835176716 GVKGKSSS 8 Unmodified _GVKGKSSS_ 0 0 0 REV__ENST00000372486.5_1_9:132397750-132398029:+|nuORF REV__ENST00000372486.5_1_9:132397750-132398029:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2097473144531 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 38.025 1 35.688 35.188 36.188 -2.3375 0 0 0 0.2396 1 6750 6750 0.30703 0.30703 1 + 17991 21025 11762 11766 18039 18039 0.023649672835176716 GVKGKSSS 8 Unmodified _GVKGKSSS_ 0 0 0 REV__ENST00000372486.5_1_9:132397750-132398029:+|nuORF REV__ENST00000372486.5_1_9:132397750-132398029:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21099853515625 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 40.394 1 37.905 37.405 38.405 -2.4896 0 0 0 0.2396 1 7229 7229 0 0 1 + 17992 21025 11762 11766 18040 18040 0.023649672835176716 GVKGKSSS 8 Unmodified _GVKGKSSS_ 0 0 0 REV__ENST00000372486.5_1_9:132397750-132398029:+|nuORF REV__ENST00000372486.5_1_9:132397750-132398029:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2106018066406 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 76.442 1 72.808 72.308 73.308 -3.6337 0 0 0 0.2396 1 14554 14554 0 0 1 + 17993 21025 11762 11766 18041 18041 0.023649672835176716 GVKIAMYF 8 Unmodified _GVKIAMYF_ 0 0 0 nc|ENSG00000074855|Q9HCE9-2|ANO8;ENSG00000074855|ENST00000159087|ANO8;ANO8|p.T315Rfs*45|1|0.61|ENSG00000074855|chr19:17330879-17330879|C/-|frameshift_variant;ANO8|p.L363Cfs*24|1|0.57|ENSG00000074855|chr19:17330411-17330411|G/-|frameshift_variant nc|ENSG00000074855|Q9HCE9-2|ANO8 nc|ENSG00000074855|Q9HCE9-2|ANO8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649169921875 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 13.869 1 13.869 13.369 14.369 0 0 0 0 0.21486 1 2030 2030 1.6526 0 1 17994 1505 11763 11767 18042 18042 0.022165320020576473 GVKIAMYF 8 Unmodified _GVKIAMYF_ 0 0 0 nc|ENSG00000074855|Q9HCE9-2|ANO8;ENSG00000074855|ENST00000159087|ANO8;ANO8|p.T315Rfs*45|1|0.61|ENSG00000074855|chr19:17330879-17330879|C/-|frameshift_variant;ANO8|p.L363Cfs*24|1|0.57|ENSG00000074855|chr19:17330411-17330411|G/-|frameshift_variant nc|ENSG00000074855|Q9HCE9-2|ANO8 nc|ENSG00000074855|Q9HCE9-2|ANO8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651306152344 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 21.1 1 21.1 20.6 21.6 0 0 0 0 0.21486 1 3518 3518 1.6526 0.58116 1 17995 1505 11763 11767 18043 18043 0.022165320020576473 GVKIKHLTR 9 Unmodified _GVKIKHLTR_ 0 0 0 REV__ENST00000538009.5_1_11:72491938-72503953:-|nuORF REV__ENST00000538009.5_1_11:72491938-72503953:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 526.3395385742188 2 526.340375 1050.6662 NaN NaN NaN NaN NaN NaN NaN 166.53 1 161.74 161.24 162.24 -4.7898 0 0 0 0.18966 1 33471 33471 1.2148 0 1 + 17996 22834 11764 11768 18044 18044 0.14289123596381614 GVKILGPPP 9 Unmodified _GVKILGPPP_ 0 0 0 REV__ENST00000381639.3_1_7:32960952-32982757:-|nuORF REV__ENST00000381639.3_1_7:32960952-32982757:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 439.0569763183594 2 439.278921 876.543289 0.28635 0.00012579 -0.022524 -9.8944E-06 0.26383 0.00011589 439.27881614143524 21.175 0.38574 19.701 19.42 19.806 -1.4742 12 10 2 0 0 0 0.87788 1 3530 3530 2.3027 0 1 414380 + 17997 21171 11765 11769 18045 18045 0.10007867145134242 GVKKKKKKQRF 11 Unmodified _GVKKKKKKQRF_ 0 0 0 REV__ENST00000454171.1_1_7:84657519-84657798:+|nuORF REV__ENST00000454171.1_1_7:84657519-84657798:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 687.6358642578125 2 687.956438 1373.89832 0.4287 0.00029493 -0.93804 -0.00064533 -0.50934 -0.0003504 688.4575963590011 166.74 0.17043 161.79 161.73 161.9 -4.948 5 4 2 0 0 0 0.8912 1 32715 32715 0 0 1 8538500 + 17998 21837 11766 11770 18046 18046 0.22632965947150296 GVKKKLQA 8 Unmodified _GVKKKLQA_ 0 0 0 REV__ENST00000226328.8_1_4:71587943-71588060:+|nuORF REV__ENST00000226328.8_1_4:71587943-71588060:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.225830078125 2 436.28982 870.565087 -0.15266 -6.6603E-05 0.13966 6.0933E-05 -0.012995 -5.6695E-06 436.2898449811015 56.704 0.77782 53.528 53.224 54.002 -3.1761 52 21 3 0 0 0 0.76728 1 10517 10517 5.7604 1.0044 1 12479000 + 17999 20048 11767 11771 18047 18047 0.12462671893695187 GVKKKLQAIP 10 Unmodified _GVKKKLQAIP_ 0 0 0 REV__ENST00000226328.8_1_4:71587943-71588060:+|nuORF REV__ENST00000226328.8_1_4:71587943-71588060:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2733764648438 2 541.358234 1080.70191 NaN NaN NaN NaN NaN NaN NaN 157.63 1 152.34 151.84 152.84 -5.2854 0 0 0 2.8426 1 30591 30591 0.043787 0 1 + 18000 20048 11768 11772 18048 18048 0.1647916105339391 GVKKLYLIDC 10 Unmodified _GVKKLYLIDC_ 0 0 0 ORC6|p.A170Lfs*10|1|0.2|ENSG00000091651|chr16:46695613-46695613|A/-|frameshift_variant ORC6|p.A170Lfs*10|1|0.2|ENSG00000091651|chr16:46695613-46695613|A/-|frameshift_variant ORC6|p.A170Lfs*10|1|0.2|ENSG00000091651|chr16:46695613-46695613|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3323364257812 2 576.328285 1150.64202 NaN NaN NaN NaN NaN NaN NaN 132.05 1 127.41 126.91 127.91 -4.6399 0 0 0 0.22576 1 26024 26024 14.838 3.198 1 18001 12738 11769 11773 18049 18049 0.07272102327874563 GVKLVLKLPK 10 Unmodified _GVKLVLKLPK_ 0 0 0 REV__ENST00000487688.1_1_5:889867-892539:-|nuORF;REV__BRD7|p.H472Afs*14|1|0.32|ENSG00000166164|chr16:50323616-50323617|-/C|frameshift_variant REV__ENST00000487688.1_1_5:889867-892539:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7880249023438 2 547.886627 1093.7587 0.292 0.00015998 -4.164 -0.0022814 -3.872 -0.0021214 548.3844346606038 135.1 0.17651 130.27 130.2 130.38 -4.8307 5 4 2 0 0 0 1.1344 1 26029 26029 0 0 1 668440 + 18002 14010;13206 11770 11774 18050 18050 0.21557208609897316 GVKLVVKPRR 10 Unmodified _GVKLVVKPRR_ 0 0 0 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.326171875 2 576.3904 1150.76625 NaN NaN NaN NaN NaN NaN NaN 120.88 1 116.36 115.86 116.86 -4.5221 0 0 0 2.8426 1 23829 23829 0 0 1 18003 858 11771 11775 18051 18051 0.1968936093019238 GVKLVVKPRR 10 Unmodified _GVKLVVKPRR_ 0 0 0 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.326171875 2 576.3904 1150.76625 NaN NaN NaN NaN NaN NaN NaN 120.89 1 116.37 115.87 116.87 -4.5221 0 0 0 0.22588 1 23830 23830 1.8442 1.2427 1 18004 858 11771 11775 18052 18052 0.1968936093019238 GVKLVVKPRR 10 Unmodified _GVKLVVKPRR_ 0 0 0 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3251953125 2 576.3904 1150.76625 0.19883 0.0001146 3.3221 0.0019149 3.521 0.0020295 576.3927041578945 123.38 0.11017 118.8 118.74 118.85 -4.5757 4 2 2 0 0 0 1.1344 1 24312 24312 0 0 1 1756900 18005 858 11771 11775 18053 18053 0.1968936093019238 GVKLVVKPRR 10 Unmodified _GVKLVVKPRR_ 0 0 0 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3272705078125 2 576.3904 1150.76625 NaN NaN NaN NaN NaN NaN NaN 78.931 1 75.126 74.626 75.626 -3.8048 0 0 0 2.8426 1 14971 14971 0 0 1 18006 858 11771 11775 18054 18054 0.1968936093019238 GVKLVVKPRR 10 Unmodified _GVKLVVKPRR_ 0 0 0 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3231201171875 2 576.3904 1150.76625 NaN NaN NaN NaN NaN NaN NaN 137.17 1 132.33 131.83 132.83 -4.84 0 0 0 2.8426 1 26425 26425 0 0 1 18007 858 11771 11775 18055 18055 0.1968936093019238 GVKLYRLGP 9 Unmodified _GVKLYRLGP_ 0 0 0 ENSG00000143107|ENST00000370017|FNDC7 ENSG00000143107|ENST00000370017|FNDC7 ENSG00000143107|ENST00000370017|FNDC7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 335.1540832519531 3 334.874677 1001.6022 NaN NaN NaN NaN NaN NaN NaN 40.013 1 37.464 36.964 37.964 -2.5491 0 0 0 0.19624 1 7446 7446 0.073264 0 1 18008 4453 11772 11776 18056 18056 0.10146343439464545 GVKMCLQR 8 Unmodified _GVKMCLQR_ 0 0 0 ENST00000426740.6_3_1:161514508-161514637:-|nuORF ENST00000426740.6_3_1:161514508-161514637:-|nuORF ENST00000426740.6_3_1:161514508-161514637:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 312.2101135253906 3 312.170219 933.488827 NaN NaN NaN NaN NaN NaN NaN 62.722 1 59.306 58.806 59.806 -3.4158 0 0 0 0.21486 1 11712 11712 1.6526 0 1 18009 9731 11773 11777 18057 18057 0.019422087304064917 GVKMTNEAP 9 Unmodified _GVKMTNEAP_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7;DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant;nc|ENSG00000118997|Q8WXX0-2|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1755065917969 3 316.160265 945.458967 NaN NaN NaN NaN NaN NaN NaN 18.453 1 17.136 16.636 17.636 -1.3178 0 0 0 0.23508 1 2768 2768 1.1933 0.12188 1 18010 866 11774 11778 18058 18058 -0.015944517339448794 GVKMTNEAP 9 Unmodified _GVKMTNEAP_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7;DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant;nc|ENSG00000118997|Q8WXX0-2|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1607971191406 3 316.160265 945.458967 NaN NaN NaN NaN NaN NaN NaN 63.956 1 60.54 60.04 61.04 -3.4158 0 0 0 0.23508 1 11961 11961 1.0715 0 1 18011 866 11774 11778 18059 18059 -0.015944517339448794 GVKMTNEAP 9 Unmodified _GVKMTNEAP_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7;DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant;nc|ENSG00000118997|Q8WXX0-2|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.28448486328125 3 316.160265 945.458967 NaN NaN NaN NaN NaN NaN NaN 19.277 1 17.642 17.142 18.142 -1.6351 0 0 0 0.23508 1 2899 2899 1.1933 0.735 1 18012 866 11774 11778 18060 18060 -0.015944517339448794 GVKPPHRR 8 Unmodified _GVKPPHRR_ 0 0 0 REV__SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant REV__SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.19482421875 3 316.194632 945.562067 NaN NaN NaN NaN NaN NaN NaN 71.915 1 71.915 71.415 72.415 0 0 0 0 0.21486 1 13936 13936 0.45834 0 1 + 18013 19489 11775 11779 18061 18061 0.08710841559548044 GVKPVIYW 8 Unmodified _GVKPVIYW_ 0 0 0 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2462158203125 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 141.89 1 137.24 136.74 137.74 -4.6493 0 0 0 0.22934 1 28037 28037 0.68139 0 1 18014 6 11776 11780 18062 18062 0.06143867145135573 GVKREKKK 8 Unmodified _GVKREKKK_ 0 0 0 REV__ENST00000398645.6_1_11:67023765-67023882:+|nuORF REV__ENST00000398645.6_1_11:67023765-67023882:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.8143615722656 3 324.881943 971.623999 NaN NaN NaN NaN NaN NaN NaN 27.157 1 27.157 26.657 27.657 0 0 0 0 0.2396 1 4781 4781 0 0 1 + 18015 21332 11777 11781 18063 18063 0.13705148188034855 GVKRKFLR 8 Unmodified _GVKRKFLR_ 0 0 0 REV__nc|ENSG00000089250|P29475-2|NOS1 REV__nc|ENSG00000089250|P29475-2|NOS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 335.16864013671875 3 335.222299 1002.64507 NaN NaN NaN NaN NaN NaN NaN 21.262 1 19.877 19.377 20.377 -1.3847 0 0 0 0.2396 1 3339 3339 0 0 1 + 18016 14528 11778 11782 18064 18064 0.14385158287564082 GVKRPIQLK 9 Unmodified _GVKRPIQLK_ 0 0 0 nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6;RASSF6|p.K253Nfs*25|1|0.16|ENSG00000169435|chr4:73582195-73582195|T/-|frameshift_variant;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;ENSG00000169435|ENST00000307439|RASSF6 nc|ENSG00000169435|Q6ZTQ3-3|RASSF6 nc|ENSG00000169435|Q6ZTQ3-3|RASSF6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 346.87078857421875 3 346.897593 1037.67095 NaN NaN NaN NaN NaN NaN NaN 29.329 1 29.329 28.829 29.829 0 0 0 0 0.1963 1 5237 5237 0 0 1 18017 12454 11779 11783 18065 18065 0.15362007739167893 GVKRPIVP 8 Unmodified _GVKRPIVP_ 0 0 0 ENSG00000113812|ENST00000335754|ACTR8;ACTR8|p.S259Qfs*18|1|0.38|ENSG00000113812|chr3:53876623-53876623|A/-|frameshift_variant ENSG00000113812|ENST00000335754|ACTR8 ENSG00000113812|ENST00000335754|ACTR8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 433.1889953613281 2 433.284537 864.554522 NaN NaN NaN NaN NaN NaN NaN 71.928 1 71.928 71.428 72.428 0 0 0 0 0.23749 1 13939 13939 0.0082765 0 1 18018 2765 11780 11784 18066 18066 0.11682689239273714 GVKRQKAK 8 Unmodified _GVKRQKAK_ 0 0 0 REV__ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant REV__ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.03155517578125 3 305.534654 913.582134 -0.50834 -0.00015532 -0.017061 -5.2127E-06 -0.5254 -0.00016053 305.53461864275323 20.322 0.25489 20.322 20.204 20.459 0 8 6 2 0 0 0 1.0281 1 3381 3381 0 0 1 253050 + 18019 13004 11781 11785 18067 18067 0.12188592499501283 GVKRQKAK 8 Unmodified _GVKRQKAK_ 0 0 0 REV__ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant REV__ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 306.25091552734375 3 305.534654 913.582134 -0.15997 -4.8876E-05 -0.30796 -9.4092E-05 -0.46793 -0.00014297 305.5345357742894 21.681 0.2817 20.296 20.211 20.492 -1.3847 9 7 2 0 0 0 0.88811 1 3421 3421 0.45834 0 1 243590 + 18020 13004 11781 11785 18068 18068 0.12188592499501283 GVKRQKAK 8 Unmodified _GVKRQKAK_ 0 0 0 REV__ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant REV__ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 305.534654 913.582134 -0.15997 -4.8876E-05 -0.30796 -9.4092E-05 -0.46793 -0.00014297 305.5345357742894 21.681 0.2817 20.296 20.211 20.492 -1.3847 -0.012527 -0.00012127 NaN 0.45834 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 243590 + 18021 13004 11781 11785 0.12188592499501283 GVKRRWRL 8 Unmodified _GVKRRWRL_ 0 0 0 ENST00000498253.1_1_1:174980847-174983915:-|nuORF;ENSG00000120333|ENST00000476371|MRPS14 ENST00000498253.1_1_1:174980847-174983915:-|nuORF ENST00000498253.1_1_1:174980847-174983915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.56158447265625 3 357.561315 1069.66212 NaN NaN NaN NaN NaN NaN NaN 127.66 1 122.96 122.46 123.46 -4.6998 0 0 0 0.21486 1 24559 24559 1.8442 0.6509 1 18022 3131 11782 11786 18069 18069 0.13007078893360813 GVKSKSSG 8 Unmodified _GVKSKSSG_ 0 0 0 REV__POTEF|p.N269Tfs*20|1|0.35|ENSG00000196604|chr2:130114885-130114885|T/-|frameshift_variant REV__POTEF|p.N269Tfs*20|1|0.35|ENSG00000196604|chr2:130114885-130114885|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2112121582031 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 18.715 1 17.404 16.904 17.904 -1.3109 0 0 0 0.2396 1 3055 3055 0 0 1 + 18023 19263 11783 11787 18070 18070 0.023649672835290403 GVKSKSSG 8 Unmodified _GVKSKSSG_ 0 0 0 REV__POTEF|p.N269Tfs*20|1|0.35|ENSG00000196604|chr2:130114885-130114885|T/-|frameshift_variant REV__POTEF|p.N269Tfs*20|1|0.35|ENSG00000196604|chr2:130114885-130114885|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2113037109375 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 125.31 1 120.54 120.04 121.04 -4.7681 0 0 0 0.2396 1 24052 24052 0 0 1 + 18024 19263 11783 11787 18071 18071 0.023649672835290403 GVKSKSSG 8 Unmodified _GVKSKSSG_ 0 0 0 REV__POTEF|p.N269Tfs*20|1|0.35|ENSG00000196604|chr2:130114885-130114885|T/-|frameshift_variant REV__POTEF|p.N269Tfs*20|1|0.35|ENSG00000196604|chr2:130114885-130114885|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2115173339844 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 87.199 1 83.47 82.97 83.97 -3.7289 0 0 0 0.2396 1 16680 16680 0 0 1 + 18025 19263 11783 11787 18072 18072 0.023649672835290403 GVKSKSSG 8 Unmodified _GVKSKSSG_ 0 0 0 REV__POTEF|p.N269Tfs*20|1|0.35|ENSG00000196604|chr2:130114885-130114885|T/-|frameshift_variant REV__POTEF|p.N269Tfs*20|1|0.35|ENSG00000196604|chr2:130114885-130114885|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21209716796875 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 135.01 1 130.19 129.69 130.69 -4.8175 0 0 0 0.2396 1 25991 25991 0 0 1 + 18026 19263 11783 11787 18073 18073 0.023649672835290403 GVKSLELNS 9 Unmodified _GVKSLELNS_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.1772766113281 3 316.178313 945.513111 NaN NaN NaN NaN NaN NaN NaN 22.376 1 20.902 20.402 21.402 -1.4742 0 0 0 0.23508 1 3820 3820 0.96228 0.18574 1 18027 7760 11784 11788 18074 18074 0.038174636892904346 GVKTLKWM 8 Unmodified _GVKTLKWM_ 0 0 0 ENST00000581786.5_1_17:30349314-30355958:+|nuORF ENST00000581786.5_1_17:30349314-30355958:+|nuORF ENST00000581786.5_1_17:30349314-30355958:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7773132324219 2 481.778231 961.541908 NaN NaN NaN NaN NaN NaN NaN 155.93 1 150.65 150.15 151.15 -5.2854 0 0 0 0.23487 1 30246 30246 0.12286 0 1 18028 11508 11785 11789 18075 18075 0.059599097847240046 GVKTLKWM 8 Unmodified _GVKTLKWM_ 0 0 0 ENST00000581786.5_1_17:30349314-30355958:+|nuORF ENST00000581786.5_1_17:30349314-30355958:+|nuORF ENST00000581786.5_1_17:30349314-30355958:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77783203125 2 481.778231 961.541908 NaN NaN NaN NaN NaN NaN NaN 136.45 1 131.62 131.12 132.12 -4.8307 0 0 0 0.23366 1 26276 26276 0.12286 0 1 18029 11508 11785 11789 18076 18076 0.059599097847240046 GVKTLRTIL 9 Unmodified _GVKTLRTIL_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.2217712402344 3 334.221965 999.644065 NaN NaN NaN NaN NaN NaN NaN 69.417 1 69.417 68.917 69.917 0 0 0 0 0.23508 1 13440 13440 1.1933 0 1 18030 7246 11786 11790 18077 18077 0.1442289912798742 GVKTLVKIKR 10 Unmodified _GVKTLVKIKR_ 0 0 0 ENSG00000152455|ENST00000354919|SUV39H2;nc|ENSG00000152455|Q9H5I1-2|SUV39H2;SUV39H2|p.M274T|1|0.11|ENSG00000152455|chr10:14897489-14897489|T/C|missense_variant ENSG00000152455|ENST00000354919|SUV39H2 ENSG00000152455|ENST00000354919|SUV39H2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2044372558594 3 381.264164 1140.77066 NaN NaN NaN NaN NaN NaN NaN 15.284 1 13.93 13.43 14.43 -1.3534 0 0 0 0.22588 1 2094 2094 0.15932 0 1 18031 4922 11787 11791 18078 18078 0.2059082535311063 GVKVKHLAH 9 Unmodified _GVKVKHLAH_ 0 0 0 REV__nc|ENSG00000038427|P13611-3|VCAN REV__nc|ENSG00000038427|P13611-3|VCAN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 330.0083312988281 3 330.206538 987.597784 -0.56136 -0.00018537 0.55759 0.00018412 -0.0037684 -1.2444E-06 330.206676222185 27.095 0.41512 25.173 24.984 25.399 -1.9222 29 11 4 0 0 0 0.88211 1 4544 4544 2.9952 2.5369 1 18730000 + 18032 14041 11788 11792 18079 18079 0.10348879016544288 GVKVKHLAH 9 Unmodified _GVKVKHLAH_ 0 0 0 REV__nc|ENSG00000038427|P13611-3|VCAN REV__nc|ENSG00000038427|P13611-3|VCAN MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 330.206538 987.597784 -0.3838 -0.00012673 0.20125 6.6453E-05 -0.18255 -6.028E-05 330.20660152872006 25.307 0.44743 25.307 25.046 25.494 0 0.067112 -0.00016423 NaN 2.9952 35 12 4 NaN NaN NaN NaN 0 NaN NaN 0 45670000 + 18033 14041 11788 11792 0.10348879016544288 GVKVPPRSPR 10 Unmodified _GVKVPPRSPR_ 0 0 0 MBD5|p.I486V|1|0.33|ENSG00000204406|chr2:148469399-148469399|A/G|missense_variant MBD5|p.I486V|1|0.33|ENSG00000204406|chr2:148469399-148469399|A/G|missense_variant MBD5|p.I486V|1|0.33|ENSG00000204406|chr2:148469399-148469399|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 546.8167724609375 2 546.835457 1091.65636 NaN NaN NaN NaN NaN NaN NaN 173.4 1 173.4 172.9 173.9 0 0 0 0 2.8426 1 35854 35854 0.043787 0 1 18034 12114 11789 11793 18080 18080 0.11419935591038666 GVKVYRPWF 9 Unmodified _GVKVYRPWF_ 0 0 0 REV__ENSG00000183691|ENST00000332822|NOG REV__ENSG00000183691|ENST00000332822|NOG MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32080078125 2 576.321651 1150.62875 NaN NaN NaN NaN NaN NaN NaN 105.67 1 101.4 100.9 101.9 -4.2638 0 0 0 0.19632 1 20797 20797 0.0033805 0.0019993 1 + 18035 18852 11790 11794 18081 18081 0.059460323307803264 GVKWLLRF 8 Unmodified _GVKWLLRF_ 0 0 0 nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2 nc|ENSG00000138443|Q9NYB9|ABI2 nc|ENSG00000138443|Q9NYB9|ABI2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 340.2333984375 3 340.2114 1017.61237 NaN NaN NaN NaN NaN NaN NaN 105.44 1 101.18 100.68 101.68 -4.2638 0 0 0 0.21486 1 20752 20752 1.8442 0 1 18036 4172 11791 11795 18082 18082 0.10426951164697584 GVKYKILE 8 Unmodified _GVKYKILE_ 0 0 0 REV__ENST00000460046.2_3_17:19839418-19843159:-|nuORF REV__ENST00000460046.2_3_17:19839418-19843159:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.19488525390625 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 115.33 1 115.33 114.83 115.83 0 0 0 0 0.21486 1 22699 22699 0.45834 0 1 + 18037 21870 11792 11796 18083 18083 0.08807832453987885 GVKYKILE 8 Unmodified _GVKYKILE_ 0 0 0 REV__ENST00000460046.2_3_17:19839418-19843159:-|nuORF REV__ENST00000460046.2_3_17:19839418-19843159:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.127197265625 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 23.419 1 21.63 21.13 22.13 -1.7886 0 0 0 0.21486 1 3765 3765 0.45834 0.18932 1 + 18038 21870 11792 11796 18084 18084 0.08807832453987885 GVKYKILE 8 Unmodified _GVKYKILE_ 0 0 0 REV__ENST00000460046.2_3_17:19839418-19843159:-|nuORF REV__ENST00000460046.2_3_17:19839418-19843159:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.12347412109375 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 44.958 1 42.211 41.711 42.711 -2.7475 0 0 0 0.21486 1 8149 8149 0.45834 0.10771 1 + 18039 21870 11792 11796 18085 18085 0.08807832453987885 GVKYKILE 8 Unmodified _GVKYKILE_ 0 0 0 REV__ENST00000460046.2_3_17:19839418-19843159:-|nuORF REV__ENST00000460046.2_3_17:19839418-19843159:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.18597412109375 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 46.071 1 43.204 42.704 43.704 -2.8666 0 0 0 0.21486 1 8378 8378 0.45834 0.18932 1 + 18040 21870 11792 11796 18086 18086 0.08807832453987885 GVKYKILE 8 Unmodified _GVKYKILE_ 0 0 0 REV__ENST00000460046.2_3_17:19839418-19843159:-|nuORF REV__ENST00000460046.2_3_17:19839418-19843159:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1953125 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 115.22 1 110.9 110.4 111.4 -4.3136 0 0 0 0.21486 1 22183 22183 0.45834 0 1 + 18041 21870 11792 11796 18087 18087 0.08807832453987885 GVKYYPDD 8 Unmodified _GVKYYPDD_ 0 0 0 tr|U7T5Q1|U7T5Q1_FUSNUGTPaseEraOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eraPE=3SV=1 tr|U7T5Q1|U7T5Q1_FUSNUGTPaseEraOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eraPE=3SV=1 tr|U7T5Q1|U7T5Q1_FUSNUGTPaseEraOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eraPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7226257324219 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 13.037 1 12.027 11.527 12.527 -1.0098 0 0 0 0.21486 1 1860 1860 0.79363 0 1 18042 26472 11793 11797 18088 18088 -0.05078487127491371 GVLAAKLWRKK 11 Unmodified _GVLAAKLWRKK_ 0 0 0 nc|ENSG00000166947|P16452-3|EPB42;EPB42|p.C670Sfs*10|1|0.04|ENSG00000166947|chr15:43197369-43197370|-/TATAAAGG|frameshift_variant;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42;ENST00000567019.1_1_15:43489502-43501706:-|nuORF nc|ENSG00000166947|P16452-3|EPB42 nc|ENSG00000166947|P16452-3|EPB42 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0249328613281 4 318.209304 1268.80811 -0.43165 -0.00013736 0.87519 0.00027849 0.44354 0.00014114 318.4603266876811 25.058 0.54507 25.058 24.846 25.391 0 29 15 2 0 0 0 0.96227 1 4300 4300 0.094841 0.094841 1 1267900 18043 5770 11794 11798 18089 18089 0.18445916618725278 GVLAGSAKG 9 Unmodified _GVLAGSAKG_ 0 0 0 REV__nc|ENSG00000137090|Q9Y5R6-3|DMRT1 REV__nc|ENSG00000137090|Q9Y5R6-3|DMRT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 380.2189025878906 2 380.221603 758.428653 NaN NaN NaN NaN NaN NaN NaN 99.226 1 95.094 94.594 95.594 -4.1326 0 0 0 0.19649 1 19490 19490 0.40827 0.2854 1 + 18044 24055 11795 11799 18090 18090 0.03977557663176867 GVLAVLLQH 9 Unmodified _GVLAVLLQH_ 0 0 0 REV__nc|ENSG00000133816|O94851-2|MICAL2;REV__nc|ENSG00000133816|O94851|MICAL2;REV__nc|ENSG00000243156|Q7RTP6-2|MICAL3 REV__nc|ENSG00000133816|O94851|MICAL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1994323730469 3 317.19916 948.575651 NaN NaN NaN NaN NaN NaN NaN 21.525 1 20.051 19.551 20.551 -1.4742 0 0 0 0.23508 1 3644 3644 1.1933 0.12188 1 + 18045 24044;22756;19798 11796 11800 18091 18091 0.09930654548145412 GVLDISKCK 9 Unmodified _GVLDISKCK_ 0 0 0 ENST00000464213.1_1_7:80300260-80302160:+|nuORF;nc|ENSG00000135218|P16671-4|CD36;nc|ENSG00000135218|P16671-3|CD36;ENSG00000135218|ENST00000447544|CD36 ENST00000464213.1_1_7:80300260-80302160:+|nuORF ENST00000464213.1_1_7:80300260-80302160:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77227783203125 2 481.770603 961.526652 NaN NaN NaN NaN NaN NaN NaN 154.89 1 149.6 149.1 150.1 -5.2854 0 0 0 0.19691 1 30039 30039 0.029283 0 1 18046 3906 11797 11801 18092 18092 0.04434998196882134 GVLEGRLPGSC 11 Unmodified _GVLEGRLPGSC_ 0 0 0 SLC12A9|p.E16Rfs*39|1|0.34|ENSG00000146828|chr7:100854239-100854239|G/-|frameshift_variant SLC12A9|p.E16Rfs*39|1|0.34|ENSG00000146828|chr7:100854239-100854239|G/-|frameshift_variant SLC12A9|p.E16Rfs*39|1|0.34|ENSG00000146828|chr7:100854239-100854239|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.1910400390625 3 363.190336 1086.54918 NaN NaN NaN NaN NaN NaN NaN 141.93 1 137.28 136.78 137.78 -4.6493 0 0 0 0.23698 1 28045 28045 1.4551 0.26178 1 18047 25670 11798 11802 18093 18093 0.009365975945001992 GVLELEDKY 9 Unmodified _GVLELEDKY_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2781982421875 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 20.561 1 20.561 20.061 21.061 0 0 0 0 0.19632 1 3407 3407 0.073264 0 1 18048 7627 11799 11803 18094 18094 0.009303131409069465 GVLGNALEGV 10 Unmodified _GVLGNALEGV_ 0 0 0 nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;ENST00000464190.6_1_1:46049764-46072280:+|nuORF;NASP|p.T160Qfs*29|1|0.25|ENSG00000132780|chr1:45607383-45607383|A/-|frameshift_variant nc|ENSG00000132780|P49321-3|NASP nc|ENSG00000132780|P49321-3|NASP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24530029296875 2 464.758549 927.502546 0.13912 6.4658E-05 -0.48415 -0.00022501 -0.34502 -0.00016035 464.75839065087865 135.81 0.62515 135.81 135.5 136.13 0 28 17 2 0 0 0 0.087069 1 26905 26905 65.235 17.486 1 3038500 18049 12327 11800 11804 18095 18095 0.035894810348509054 GVLGNALEGV 10 Unmodified _GVLGNALEGV_ 0 0 0 nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;ENST00000464190.6_1_1:46049764-46072280:+|nuORF;NASP|p.T160Qfs*29|1|0.25|ENSG00000132780|chr1:45607383-45607383|A/-|frameshift_variant nc|ENSG00000132780|P49321-3|NASP nc|ENSG00000132780|P49321-3|NASP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25811767578125 2 464.758549 927.502546 -0.022959 -1.067E-05 -0.23337 -0.00010846 -0.25633 -0.00011913 464.75847120553294 140.52 0.64331 135.88 135.48 136.12 -4.6493 35 17 3 0 0 0 0.079919 1 27708 27708 68.081 11.904 1 4404000 18050 12327 11800 11804 18096 18096 0.035894810348509054 GVLGNALEGV 10 Unmodified _GVLGNALEGV_ 0 0 0 nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;ENST00000464190.6_1_1:46049764-46072280:+|nuORF;NASP|p.T160Qfs*29|1|0.25|ENSG00000132780|chr1:45607383-45607383|A/-|frameshift_variant nc|ENSG00000132780|P49321-3|NASP nc|ENSG00000132780|P49321-3|NASP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2579650878906 2 464.758549 927.502546 0.043103 2.0032E-05 -0.53273 -0.00024759 -0.48962 -0.00022756 464.75842223841704 140.86 0.84436 135.88 135.43 136.27 -4.9877 43 23 3 0 0 0 0.43454 1 27076 27076 28.487 10.352 1 3189500 18051 12327 11800 11804 18097 18097 0.035894810348509054 GVLGNALEGV 10 Unmodified _GVLGNALEGV_ 0 0 0 nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;ENST00000464190.6_1_1:46049764-46072280:+|nuORF;NASP|p.T160Qfs*29|1|0.25|ENSG00000132780|chr1:45607383-45607383|A/-|frameshift_variant nc|ENSG00000132780|P49321-3|NASP nc|ENSG00000132780|P49321-3|NASP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2581787109375 2 464.758549 927.502546 0.26908 0.00012506 -1.333 -0.00061951 -1.0639 -0.00049445 464.75837524400606 140.84 0.51414 135.97 135.67 136.18 -4.8678 19 14 2 0 0 0 0.089578 1 27166 27166 64.236 26.262 1 3158600 18052 12327 11800 11804 18098 18098 0.035894810348509054 GVLGNLCLM 9 Unmodified _GVLGNLCLM_ 0 0 0 ENSG00000264717|ENST00000576178|NPY4R2;ENSG00000204174|ENST00000374312|NPY4R ENSG00000264717|ENST00000576178|NPY4R2 ENSG00000264717|ENST00000576178|NPY4R2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.240234375 2 460.240624 918.466695 -0.15512 -7.1392E-05 -0.34153 -0.00015719 -0.49665 -0.00022858 460.2404396156311 47.804 0.45681 44.935 44.742 45.199 -2.869 21 12 2 0 0 0 0.66537 1 9020 9020 8.5933 0 1 1330000 18053 7563 11801 11805 18099 18099 0.004199842619868832 GVLGRRVP 8 Unmodified _GVLGRRVP_ 0 0 0 INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant;INSM2|p.F535Lfs*6|3|0.26|ENSG00000168348|chr14:35535851-35535851|T/-|frameshift_variant;ENSG00000168348|ENST00000307169|INSM2 INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.2703857421875 2 427.271961 852.52937 NaN NaN NaN NaN NaN NaN NaN 135.12 1 130.22 129.72 130.72 -4.8951 0 0 0 0.21486 1 25954 25954 2.8892 0 1 18054 5899 11802 11806 18100 18100 0.09720634436700948 GVLGTGAGLE 10 Unmodified _GVLGTGAGLE_ 0 0 0 REV__nc|ENSG00000144401|Q8WXB1-2|METTL21A REV__nc|ENSG00000144401|Q8WXB1-2|METTL21A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2255554199219 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 59.897 1 56.964 56.464 57.464 -2.9333 0 0 0 2.8426 1 11520 11520 0.26539 0 1 + 18055 16780 11803 11807 18101 18101 0.01901505626483413 GVLHKMWP 8 Unmodified _GVLHKMWP_ 0 0 0 REV__ENSG00000146809|ENST00000451215|ASB15 REV__ENSG00000146809|ENST00000451215|ASB15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.8503112792969 3 323.177591 966.510943 NaN NaN NaN NaN NaN NaN NaN 35.077 1 35.077 34.577 35.577 0 0 0 0 0.21486 1 6433 6433 0.45834 0 1 + 18056 16899 11804 11808 18102 18102 0.02634756470490629 GVLIAMIFV 9 Unmodified _GVLIAMIFV_ 0 0 0 REV__nc|ENSG00000153391|Q6PI98-3|INO80C REV__nc|ENSG00000153391|Q6PI98-3|INO80C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7890930175781 2 481.790807 961.56706 NaN NaN NaN NaN NaN NaN NaN 173.35 1 168.47 167.97 168.97 -4.881 0 0 0 0.23508 1 34457 34457 9.3474 2.0582 1 + 18057 24104 11805 11809 18103 18103 0.08473964587312821 GVLIFKKLI 9 Unmodified _GVLIFKKLI_ 0 0 0 REV__OR10X1|p.E27K|1|0.28|ENSG00000279111|chr1:158579821-158579821|C/T|missense_variant REV__OR10X1|p.E27K|1|0.28|ENSG00000279111|chr1:158579821-158579821|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.50885009765625 3 344.238956 1029.69504 NaN NaN NaN NaN NaN NaN NaN 27.044 1 27.044 26.544 27.544 0 0 0 0 0.1963 1 4757 4757 0 0 1 + 18058 24400 11806 11810 18104 18104 0.18137848172841586 GVLILFMFRR 10 Unmodified _GVLILFMFRR_ 0 0 0 nc|ENSG00000130653|Q6ZV29-2|PNPLA7;PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant;nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7 nc|ENSG00000130653|Q6ZV29-2|PNPLA7 nc|ENSG00000130653|Q6ZV29-2|PNPLA7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1627502441406 4 313.690319 1250.73217 -0.96181 -0.00030171 0.54429 0.00017074 -0.41752 -0.00013097 313.69047711003236 24.399 0.41454 22.546 22.329 22.744 -1.8534 22 11 3 0 0 0 0.91149 1 3935 3935 0.15932 0.064481 1 594870 18059 3623 11807 11811 18105 18105 0.11683196446938382 GVLILFMFRR 10 Unmodified _GVLILFMFRR_ 0 0 0 nc|ENSG00000130653|Q6ZV29-2|PNPLA7;PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant;nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7 nc|ENSG00000130653|Q6ZV29-2|PNPLA7 nc|ENSG00000130653|Q6ZV29-2|PNPLA7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 313.690319 1250.73217 -0.47468 -0.0001489 0.10901 3.4195E-05 -0.36567 -0.00011471 313.6903640584121 22.519 0.42105 22.519 22.258 22.679 0 -0.064014 8.7088E-05 NaN 0.15932 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1448700 18060 3623 11807 11811 0.11683196446938382 GVLILFMFRR 10 Unmodified _GVLILFMFRR_ 0 0 0 nc|ENSG00000130653|Q6ZV29-2|PNPLA7;PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant;nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7 nc|ENSG00000130653|Q6ZV29-2|PNPLA7 nc|ENSG00000130653|Q6ZV29-2|PNPLA7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 313.690319 1250.73217 0.66987 0.00021013 -0.74464 -0.00023359 -0.07477 -2.3455E-05 313.69002149828395 24.261 0.35346 22.708 22.497 22.85 -1.5532 0.12476 -0.00098404 NaN 0.15932 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 453090 18061 3623 11807 11811 0.11683196446938382 GVLILFMFRR 10 Unmodified _GVLILFMFRR_ 0 0 0 nc|ENSG00000130653|Q6ZV29-2|PNPLA7;PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant;nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7 nc|ENSG00000130653|Q6ZV29-2|PNPLA7 nc|ENSG00000130653|Q6ZV29-2|PNPLA7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 313.690319 1250.73217 -0.0047137 -1.4786E-06 -0.14986 -4.7008E-05 -0.15457 -4.8487E-05 313.6902536655592 24.093 0.35204 22.559 22.398 22.751 -1.5342 -0.024032 -0.00023773 NaN 0.15932 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 747870 18062 3623 11807 11811 0.11683196446938382 GVLITGKV 8 Unmodified _GVLITGKV_ 0 0 0 REV__ENSG00000115159|ENST00000438166|GPD2 REV__ENSG00000115159|ENST00000438166|GPD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 394.2939453125 2 393.757821 785.501089 -0.70036 -0.00027577 0.63827 0.00025133 -0.062087 -2.4447E-05 393.75802462634164 45.364 0.59605 42.497 42.187 42.783 -2.8666 26 16 2 0 0 0 1.0271 1 8183 8183 0.69038 0 1 1223000 + 18063 15405 11808 11812 18106 18106 0.09975891736758058 GVLIVKKY 8 Unmodified _GVLIVKKY_ 0 0 0 ENST00000485149.1_1_1:109856516-109859516:-|nuORF;nc|ENSG00000134243|Q99523-2|SORT1;ENSG00000134243|ENST00000256637|SORT1 ENST00000485149.1_1_1:109856516-109859516:-|nuORF ENST00000485149.1_1_1:109856516-109859516:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24017333984375 2 460.302396 918.590239 NaN NaN NaN NaN NaN NaN NaN 51.669 1 48.624 48.124 49.124 -3.0453 0 0 0 0.21486 1 9493 9493 2.8892 0 1 18064 3833 11809 11813 18107 18107 0.12768726696265276 GVLKLIDASIY 11 Unmodified _GVLKLIDASIY_ 0 0 0 REV__SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant REV__SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 397.9033508300781 3 397.904301 1190.69108 NaN NaN NaN NaN NaN NaN NaN 13.39 1 12.269 11.769 12.769 -1.1206 0 0 0 0.23698 1 1688 1688 0.45452 0 1 + 18065 15455 11810 11814 18108 18108 0.10335713888457576 GVLKRLILL 9 Unmodified _GVLKRLILL_ 0 0 0 ENST00000472637.5_1_3:112724385-112732818:-|nuORF;nc|ENSG00000163608|Q6NW34-2|NEPRO;ENSG00000163608|ENST00000314400|NEPRO ENST00000472637.5_1_3:112724385-112732818:-|nuORF ENST00000472637.5_1_3:112724385-112732818:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.943115234375 2 512.865695 1023.71684 NaN NaN NaN NaN NaN NaN NaN 127.76 1 127.76 127.26 128.26 0 0 0 0 0.19624 1 25224 25224 0 0 1 18066 5445 11811 11815 18109 18109 0.20592652921436638 GVLKRMEWLL 10 Unmodified _GVLKRMEWLL_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.772216796875 2 622.862826 1243.7111 NaN NaN NaN NaN NaN NaN NaN 110.36 1 110.36 109.86 110.86 0 0 0 0 2.8426 1 21704 21704 0.013265 0.0073095 1 18067 7167 11812 11816 18110 18110 0.09899186347456634 GVLLALALILP 11 Unmodified _GVLLALALILP_ 0 0 0 VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant;ENSG00000110799|ENST00000261405|VWF VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 546.7559814453125 2 546.873185 1091.73182 NaN NaN NaN NaN NaN NaN NaN 172.18 1 172.18 171.68 172.68 0 0 0 0 0.22632 1 35535 35535 0.026206 0 1 18068 2588 11813 11817 18111 18111 0.18962099998748272 GVLLAPLHEE 10 Unmodified _GVLLAPLHEE_ 0 0 0 ENST00000532150.1_1_11:75917479-75921696:-|nuORF ENST00000532150.1_1_11:75917479-75921696:-|nuORF ENST00000532150.1_1_11:75917479-75921696:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2021789550781 3 359.86948 1076.58661 -0.49079 -0.00017662 0.24321 8.7523E-05 -0.24758 -8.9098E-05 359.8695664880347 57.594 0.65704 57.594 57.237 57.894 0 44 18 3 0 0 0 0.75487 1 10948 10948 4.1895 1.1172 1 3868700 18069 10978 11814 11818 18112 18112 0.05138012131760661 GVLLFKLLY 9 Unmodified _GVLLFKLLY_ 0 0 0 REV__nc|ENSG00000197562|Q96S21-2|RAB40C REV__nc|ENSG00000197562|Q96S21-2|RAB40C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.263427734375 2 533.338978 1064.6634 NaN NaN NaN NaN NaN NaN NaN 131.77 1 126.91 126.41 127.41 -4.8527 0 0 0 0.23508 1 25307 25307 5.2307 2.9279 1 + 18070 24230 11815 11819 18113 18113 0.133658554188969 GVLLFKLLY 9 Unmodified _GVLLFKLLY_ 0 0 0 REV__nc|ENSG00000197562|Q96S21-2|RAB40C REV__nc|ENSG00000197562|Q96S21-2|RAB40C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2733764648438 2 533.338978 1064.6634 0.25894 0.0001381 0.64753 0.00034535 0.90647 0.00048346 533.3390307746987 89.121 0.20535 85.371 85.237 85.442 -3.7501 9 5 2 0 0 0 0.63929 1 17041 17041 0.073264 0.043981 1 372630 + 18071 24230 11815 11819 18114 18114 0.133658554188969 GVLLHAAA 8 Unmodified _GVLLHAAA_ 0 0 0 ENST00000343674.10_1_11:46392918-46393321:+|nuORF ENST00000343674.10_1_11:46392918-46393321:+|nuORF ENST00000343674.10_1_11:46392918-46393321:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.224853515625 2 376.226688 750.438824 NaN NaN NaN NaN NaN NaN NaN 105.22 1 100.95 100.45 101.45 -4.2638 0 0 0 0.23664 1 20703 20703 3.2813 0 1 18072 8880 11816 11820 18115 18115 0.05362165388419271 GVLLIGKPLKG 11 Unmodified _GVLLIGKPLKG_ 0 0 0 REV__nc|ENSG00000136758|Q96TA2-3|YME1L1 REV__nc|ENSG00000136758|Q96TA2-3|YME1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7741088867188 2 547.868434 1093.72232 NaN NaN NaN NaN NaN NaN NaN 67.383 1 64.274 63.774 64.774 -3.1086 0 0 0 0.22632 1 13069 13069 0.00056442 0.00056442 1 + 18073 16347 11817 11821 18116 18116 0.17920331713207815 GVLLIILIVL 10 Unmodified _GVLLIILIVL_ 0 0 0 ENSG00000168899|ENST00000306384|VAMP5 ENSG00000168899|ENST00000306384|VAMP5 ENSG00000168899|ENST00000306384|VAMP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2808227539062 2 533.385929 1064.7573 NaN NaN NaN NaN NaN NaN NaN 100.7 1 100.7 100.2 101.2 0 0 0 0 2.8426 1 19756 19756 0 0 1 18074 5946 11818 11822 18117 18117 0.22751574521180373 GVLLIILIVL 10 Unmodified _GVLLIILIVL_ 0 0 0 ENSG00000168899|ENST00000306384|VAMP5 ENSG00000168899|ENST00000306384|VAMP5 ENSG00000168899|ENST00000306384|VAMP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2777099609375 2 533.385929 1064.7573 NaN NaN NaN NaN NaN NaN NaN 129.75 1 129.75 129.25 130.25 0 0 0 0 2.8426 1 25636 25636 0 0 1 18075 5946 11818 11822 18118 18118 0.22751574521180373 GVLLLLPKLE 10 Unmodified _GVLLLLPKLE_ 0 0 0 ENST00000553869.6_1_2:113993137-114016863:+|nuORF;ENST00000437551.5_1_2:113993110-113996772:+|nuORF;ENST00000451179.5_1_2:113993110-114020957:+|nuORF ENST00000553869.6_1_2:113993137-114016863:+|nuORF ENST00000553869.6_1_2:113993137-114016863:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7876586914062 2 547.862818 1093.71108 NaN NaN NaN NaN NaN NaN NaN 120.27 1 120.27 119.77 120.77 0 0 0 0 2.8426 1 23709 23709 0 0 1 18076 9852 11819 11823 18119 18119 0.16797509619073026 GVLLLRRPA 9 Unmodified _GVLLLRRPA_ 0 0 0 REV__ENSG00000255561|ENST00000260257|FDXACB1 REV__ENSG00000255561|ENST00000260257|FDXACB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 499.2444763183594 2 497.829643 993.644734 -0.027649 -1.3764E-05 0.27383 0.00013632 0.24618 0.00012256 497.82971877554576 68.162 0.6815 65.053 64.73 65.412 -3.1086 46 19 3 0 0 0 0.6171 1 13193 13193 0.073264 0 1 13408000 + 18077 19857 11820 11824 18120 18120 0.14765738567689368 GVLLSLPVLLQ 11 Unmodified _GVLLSLPVLLQ_ 0 0 0 LGR5|p.T36Hfs*36|1|0.14|ENSG00000139292|chr12:71440182-71440182|C/-|frameshift_variant;ENST00000550851.5_1_12:71833860-71960711:+|nuORF;LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant;nc|ENSG00000139292|O75473-3|LGR5;nc|ENSG00000139292|O75473-2|LGR5;ENSG00000139292|ENST00000266674|LGR5 LGR5|p.T36Hfs*36|1|0.14|ENSG00000139292|chr12:71440182-71440182|C/-|frameshift_variant LGR5|p.T36Hfs*36|1|0.14|ENSG00000139292|chr12:71440182-71440182|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3310546875 2 576.373549 1150.73255 NaN NaN NaN NaN NaN NaN NaN 122.1 1 117.41 116.91 117.91 -4.6873 0 0 0 0.23634 1 23441 23441 3.2813 1.2216 1 18078 4235 11821 11825 18121 18121 0.1632089464778801 GVLLTYLK 8 Unmodified _GVLLTYLK_ 0 0 0 REV__L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|1|1|sense REV__L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|1|1|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.76116943359375 2 453.786579 905.558604 0.40215 0.00018249 -0.12834 -5.8237E-05 0.27382 0.00012425 453.7864085221793 29.29 0.48478 27.293 27.007 27.491 -1.9962 16 13 2 0 0 0 8448 1 4922 4922 0 0 1 283150 + 18079 23784 11822 11826 18122 18122 0.1020473394231658 GVLNPELGY 9 Unmodified _GVLNPELGY_ 0 0 0 ENSG00000125124|ENST00000245157|BBS2;BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant;ENST00000565378.1_1_16:56545067-56553907:-|nuORF;ENST00000565781.5_1_16:56536573-56553907:-|nuORF;ENST00000569342.5_1_16:56536573-56553774:-|nuORF ENSG00000125124|ENST00000245157|BBS2 ENSG00000125124|ENST00000245157|BBS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2548522949219 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 125.09 1 125.09 124.59 125.59 0 0 0 0 0.23508 1 24670 24670 8.5933 0.68312 1 18080 3343 11823 11827 18123 18123 0.00982078660570096 GVLNPELGY 9 Unmodified _GVLNPELGY_ 0 0 0 ENSG00000125124|ENST00000245157|BBS2;BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant;ENST00000565378.1_1_16:56545067-56553907:-|nuORF;ENST00000565781.5_1_16:56536573-56553907:-|nuORF;ENST00000569342.5_1_16:56536573-56553774:-|nuORF ENSG00000125124|ENST00000245157|BBS2 ENSG00000125124|ENST00000245157|BBS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25433349609375 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 179.35 1 174.44 173.94 174.94 -4.9114 0 0 0 0.23508 1 35786 35786 2.0598 0 1 18081 3343 11823 11827 18124 18124 0.00982078660570096 GVLPAVGLRVT 11 Unmodified _GVLPAVGLRVT_ 0 0 0 ENST00000481053.5_1_9:139259475-139262364:-|nuORF ENST00000481053.5_1_9:139259475-139262364:-|nuORF ENST00000481053.5_1_9:139259475-139262364:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2737426757812 2 541.340041 1080.66553 NaN NaN NaN NaN NaN NaN NaN 158.95 1 158.95 158.45 159.45 0 0 0 0 0.22632 1 31917 31917 0.172 0 1 18082 10366 11824 11828 18125 18125 0.1284228415670441 GVLPHPTLRP 10 Unmodified _GVLPHPTLRP_ 0 0 0 ENST00000588912.1_1_19:10400815-10401250:+|nuORF ENST00000588912.1_1_19:10400815-10401250:+|nuORF ENST00000588912.1_1_19:10400815-10401250:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78369140625 2 543.824558 1085.63456 NaN NaN NaN NaN NaN NaN NaN 173.45 1 168.57 168.07 169.07 -4.881 0 0 0 2.8426 1 34482 34482 0.013265 0 1 18083 11577 11825 11829 18126 18126 0.09517130842459665 GVLPILPLL 9 Unmodified _GVLPILPLL_ 0 0 0 KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94;ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;KIAA0195|p.S895Pfs*13|5|0.32|ENSG00000177728|chr17:75494982-75494982|C/-|frameshift_variant KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.2095947265625 3 312.21604 933.62629 NaN NaN NaN NaN NaN NaN NaN 61.205 1 58.272 57.772 58.772 -2.9333 0 0 0 0.23508 1 11794 11794 0.26902 0.26902 1 18084 6534 11826 11830 18127 18127 0.15682183873127542 GVLPILPLL 9 Unmodified _GVLPILPLL_ 0 0 0 KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94;ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;KIAA0195|p.S895Pfs*13|5|0.32|ENSG00000177728|chr17:75494982-75494982|C/-|frameshift_variant KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.200439453125 3 312.21604 933.62629 NaN NaN NaN NaN NaN NaN NaN 62.253 1 59.013 58.513 59.513 -3.2395 0 0 0 0.23508 1 11669 11669 0.26902 0.26902 1 18085 6534 11826 11830 18128 18128 0.15682183873127542 GVLPLVLEQL 10 Unmodified _GVLPLVLEQL_ 0 0 0 REV__ENSG00000215186|ENST00000421285|GOLGA6B REV__ENSG00000215186|ENST00000421285|GOLGA6B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2780151367188 2 540.8368 1079.65905 0.1311 7.0903E-05 -2.9904 -0.0016173 -2.8593 -0.0015464 541.3377632165837 135.04 0.24481 130.14 129.94 130.18 -4.8951 8 6 2 0 0 0 1.1309 1 25930 25930 0.26539 0 1 1849600 + 18086 16577 11827 11831 18129 18129 0.1224034620531711 GVLPNIQAV 9 Unmodified _GVLPNIQAV_ 0 0 0 ENST00000479986.1_1_6:27858584-27860837:-|nuORF;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000184270|ENST00000331128|H2AC21;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;nc|ENSG00000246705|Q9BTM1-2|H2AJ ENST00000479986.1_1_6:27858584-27860837:-|nuORF ENST00000479986.1_1_6:27858584-27860837:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 910.4082641601562 1 910.535643 909.528367 0.34792 0.00031679 0.078915 7.1855E-05 0.42683 0.00038865 910.5355967175965 146.88 0.58841 141.77 141.45 142.03 -5.1108 27 16 2 0 0 0 0.0022041 1 28431 28431 131.3 67.735 1 7563900 18087 5549 11828 11832 18130 18130 0.06998375277123614 GVLPNIQAV 9 Unmodified _GVLPNIQAV_ 0 0 0 ENST00000479986.1_1_6:27858584-27860837:-|nuORF;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000184270|ENST00000331128|H2AC21;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;nc|ENSG00000246705|Q9BTM1-2|H2AJ ENST00000479986.1_1_6:27858584-27860837:-|nuORF ENST00000479986.1_1_6:27858584-27860837:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 910.535643 909.528367 0.52612 0.00047905 -0.42536 -0.00038731 0.10076 9.1744E-05 910.5354524451654 141.6 0.7552 141.6 141.26 142.02 0 -0.083641 -0.00024638 NaN 131.3 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 9032500 18088 5549 11828 11832 0.06998375277123614 GVLPNIQAV 9 Unmodified _GVLPNIQAV_ 0 0 0 ENST00000479986.1_1_6:27858584-27860837:-|nuORF;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000184270|ENST00000331128|H2AC21;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;nc|ENSG00000246705|Q9BTM1-2|H2AJ ENST00000479986.1_1_6:27858584-27860837:-|nuORF ENST00000479986.1_1_6:27858584-27860837:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 910.535643 909.528367 0.28098 0.00025584 -0.059494 -5.4171E-05 0.22149 0.00020167 910.535717054499 146.35 0.59048 141.66 141.36 141.95 -4.6868 -0.023556 8.6755E-05 NaN 131.3 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 9855500 18089 5549 11828 11832 0.06998375277123614 GVLPNIQAV 9 Unmodified _GVLPNIQAV_ 0 0 0 ENST00000479986.1_1_6:27858584-27860837:-|nuORF;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000184270|ENST00000331128|H2AC21;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;nc|ENSG00000246705|Q9BTM1-2|H2AJ ENST00000479986.1_1_6:27858584-27860837:-|nuORF ENST00000479986.1_1_6:27858584-27860837:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 910.535643 909.528367 0.46608 0.00042438 -0.25873 -0.00023558 0.20735 0.0001888 910.535326299171 146.71 0.77692 141.71 141.33 142.1 -5 0.021858 -9.4656E-05 NaN 131.3 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 7007800 18090 5549 11828 11832 0.06998375277123614 GVLPNRHH 8 Unmodified _GVLPNRHH_ 0 0 0 REV__ENST00000411500.5_1_6:32520814-32525810:-|nuORF REV__ENST00000411500.5_1_6:32520814-32525810:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2411804199219 2 465.256843 928.499132 NaN NaN NaN NaN NaN NaN NaN 123.51 1 118.92 118.42 119.42 -4.5926 0 0 0 0.21486 1 23779 23779 5.2307 0.47466 1 + 18091 21424 11829 11833 18131 18131 0.03202275771513996 GVLQALLIVLI 11 Unmodified _GVLQALLIVLI_ 0 0 0 nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;ENST00000576462.1_1_16:67991639-68002357:-|nuORF;SLC12A4|p.Y236Tfs*13|1|0.47|ENSG00000124067|chr16:67952395-67952395|A/-|frameshift_variant;ENST00000572010.5_1_16:67986261-67997363:-|nuORF nc|ENSG00000124067|Q9UP95-3|SLC12A4;ENST00000572010.5_1_16:67986261-67997363:-|nuORF nc|ENSG00000124067|Q9UP95-3|SLC12A4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3310546875 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 157.41 1 152.62 152.12 153.12 -4.7885 0 0 0 0.23698 1 31305 31305 1.3295 0.13619 1 18092 3289;11428 11830 11834 18132 18132 0.19957771544500247 GVLQKIKK 8 Unmodified _GVLQKIKK_ 0 0 0 REV__EXOSC10|p.S861L|1|0.36|ENSG00000171824|chr1:11068053-11068053|G/A|missense_variant REV__EXOSC10|p.S861L|1|0.36|ENSG00000171824|chr1:11068053-11068053|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.1959533691406 3 305.211289 912.612037 NaN NaN NaN NaN NaN NaN NaN 21.684 1 19.962 19.462 20.462 -1.7211 0 0 0 0.21486 1 3404 3404 0.45834 0.18932 1 + 18093 23506 11831 11835 18133 18133 0.1522353144483759 GVLQKIKK 8 Unmodified _GVLQKIKK_ 0 0 0 REV__EXOSC10|p.S861L|1|0.36|ENSG00000171824|chr1:11068053-11068053|G/A|missense_variant REV__EXOSC10|p.S861L|1|0.36|ENSG00000171824|chr1:11068053-11068053|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.2100524902344 3 305.211289 912.612037 NaN NaN NaN NaN NaN NaN NaN 24.228 1 22.375 21.875 22.875 -1.8534 0 0 0 0.21486 1 3930 3930 0.45834 0.18932 1 + 18094 23506 11831 11835 18134 18134 0.1522353144483759 GVLQTMNEIQQ 11 Unmodified _GVLQTMNEIQQ_ 0 0 0 REV__ENST00000504667.2_1_4:77274263-77288776:-|nuORF REV__ENST00000504667.2_1_4:77274263-77288776:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7611083984375 2 630.81627 1259.61799 NaN NaN NaN NaN NaN NaN NaN 163.15 1 157.96 157.46 158.46 -5.1878 0 0 0 0.22632 1 31731 31731 0.026206 0 1 + 18095 17609 11832 11836 18135 18135 -0.0014378289645264886 GVLRDRPIR 9 Unmodified _GVLRDRPIR_ 0 0 0 REV__ENSG00000124257|ENST00000372518|NEURL2 REV__ENSG00000124257|ENST00000372518|NEURL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2714233398438 2 541.333082 1080.65161 0.3429 0.00018562 0.29548 0.00015995 0.63838 0.00034558 541.3338551915033 139.77 0.21118 134.93 134.84 135.05 -4.8492 6 5 2 0 0 0 0.64208 1 26953 26953 0.073264 0.071882 1 800400 + 18096 15769 11833 11837 18136 18136 0.11451051448261751 GVLRILKVKAY 11 Unmodified _GVLRILKVKAY_ 0 0 0 REV__nc|ENSG00000204084|P32019-4|INPP5B REV__nc|ENSG00000204084|P32019-4|INPP5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7713012695312 2 630.41354 1258.81253 NaN NaN NaN NaN NaN NaN NaN 99.6 1 99.6 99.1 100.1 0 0 0 0 0.22632 1 19534 19534 0.026206 0 1 + 18097 24237 11834 11838 18137 18137 0.19347381041666267 GVLRILKVKAY 11 Unmodified _GVLRILKVKAY_ 0 0 0 REV__nc|ENSG00000204084|P32019-4|INPP5B REV__nc|ENSG00000204084|P32019-4|INPP5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7713012695312 2 630.41354 1258.81253 NaN NaN NaN NaN NaN NaN NaN 99.63 1 99.63 99.13 100.13 0 0 0 0 0.23698 1 19538 19538 1.4819 0.8804 1 + 18098 24237 11834 11838 18138 18138 0.19347381041666267 GVLRKLKP 8 Unmodified _GVLRKLKP_ 0 0 0 ENSG00000125815|ENST00000246012|CST8 ENSG00000125815|ENST00000246012|CST8 ENSG00000125815|ENST00000246012|CST8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.03961181640625 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 26.397 1 24.762 24.262 25.262 -1.6347 0 0 0 0.21486 1 4378 4378 0.45834 0 1 18099 3390 11835 11839 18139 18139 0.15394951164705617 GVLRKLKP 8 Unmodified _GVLRKLKP_ 0 0 0 ENSG00000125815|ENST00000246012|CST8 ENSG00000125815|ENST00000246012|CST8 ENSG00000125815|ENST00000246012|CST8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.21197509765625 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 23.682 1 21.893 21.393 22.393 -1.7886 0 0 0 0.21486 1 3821 3821 0.45834 0 1 18100 3390 11835 11839 18140 18140 0.15394951164705617 GVLRLQPLGAA 11 Unmodified _GVLRLQPLGAA_ 0 0 0 ENST00000565010.1_1_16:602435-603513:+|nuORF ENST00000565010.1_1_16:602435-603513:+|nuORF ENST00000565010.1_1_16:602435-603513:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7798461914062 2 547.837665 1093.66078 NaN NaN NaN NaN NaN NaN NaN 71.399 1 71.399 70.899 71.899 0 0 0 0 0.22632 1 13834 13834 0.026206 0 1 18101 11352 11836 11840 18141 18141 0.11769400013940867 GVLRRKRRRP 10 Unmodified _GVLRRKRRRP_ 0 0 0 REV__ENST00000286827.7_1_21:32711646-32711721:-|nuORF REV__ENST00000286827.7_1_21:32711646-32711721:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 647.6441650390625 2 647.426171 1292.83779 0.42897 0.00027773 1.1889 0.0007697 1.6178 0.0010474 647.4248460136778 172.42 0.17451 167.52 167.4 167.57 -4.8977 6 4 2 0 0 0 1.1344 1 34202 34202 0 0 1 2581300 + 18102 20333 11837 11841 18142 18142 0.2030829340742457 GVLRRLAAC 9 Unmodified _GVLRRLAAC_ 0 0 0 nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000526393.5_1_11:71507064-71507340:+|nuORF;ENST00000510506.5_1_4:3945015-3952874:-|nuORF nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.1912536621094 3 320.192011 957.554204 NaN NaN NaN NaN NaN NaN NaN 41.592 1 39.102 38.602 39.602 -2.4896 0 0 0 0.23508 1 7467 7467 1.1933 0.735 1 18103 3051 11838 11842 18143 18143 0.07372946247767231 GVLRWVLTFI 10 Unmodified _GVLRWVLTFI_ 0 0 0 ENSG00000178828|ENST00000375121|RNF186 ENSG00000178828|ENST00000375121|RNF186 ENSG00000178828|ENST00000375121|RNF186 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2796630859375 2 602.366059 1202.71756 NaN NaN NaN NaN NaN NaN NaN 123.74 1 123.74 123.24 124.24 0 0 0 0 2.8426 1 24393 24393 0.26539 0 1 18104 6594 11839 11843 18144 18144 0.12431447570452292 GVLSAFSPSL 10 Unmodified _GVLSAFSPSL_ 0 0 0 ENST00000206542.8_1_14:20922822-20922888:-|nuORF ENST00000206542.8_1_14:20922822-20922888:-|nuORF ENST00000206542.8_1_14:20922822-20922888:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2715759277344 2 489.26875 976.522947 0.20669 0.00010113 -0.027649 -1.3528E-05 0.17904 8.7598E-05 489.2686860888107 111.1 1.3994 111.1 110.47 111.87 0 125 39 5 0 0 0 0.32088 1 21829 21829 36.127 4.0895 1 77276000 18105 8093 11840 11844 18145 18145 0.03374651694673503 GVLSGDTL 8 Unmodified _GVLSGDTL_ 0 0 0 REV__GRIN2D|p.L300Cfs*27|1|0.45|ENSG00000105464|chr19:48405161-48405161|C/-|frameshift_variant REV__GRIN2D|p.L300Cfs*27|1|0.45|ENSG00000105464|chr19:48405161-48405161|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2059631347656 2 381.205618 760.396684 NaN NaN NaN NaN NaN NaN NaN 170.8 1 170.8 170.3 171.3 0 0 0 0 0.21486 1 35141 35141 2.5775 0 1 + 18106 14992 11841 11845 18146 18146 0.006901451894009369 GVLSIGCALF 10 Unmodified _GVLSIGCALF_ 0 0 0 REV__ENST00000455309.1_1_2:112249049-112249193:+|nuORF REV__ENST00000455309.1_1_2:112249049-112249193:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2694091796875 2 490.267696 978.520839 NaN NaN NaN NaN NaN NaN NaN 162.65 1 162.65 162.15 163.15 0 0 0 0 0.22588 1 32716 32716 10.824 0 1 + 18107 21845 11842 11846 18147 18147 0.030718996852101554 GVLSIVTLA 9 Unmodified _GVLSIVTLA_ 0 0 0 REV__MFSD11|p.T184Dfs*13|1|0.36|ENSG00000092931|chr17:76744370-76744371|-/G|frameshift_variant REV__MFSD11|p.T184Dfs*13|1|0.36|ENSG00000092931|chr17:76744370-76744371|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2203063964844 2 436.776211 871.537869 NaN NaN NaN NaN NaN NaN NaN 144.46 1 144.46 143.96 144.96 0 0 0 0 0.19656 1 28864 28864 0.20686 0 1 + 18108 14591 11843 11847 18148 18148 0.0969614356265538 GVLTCYIQI 9 Unmodified _GVLTCYIQI_ 0 0 0 nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260-2|RELCH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.18560791015625 3 337.184411 1008.5314 NaN NaN NaN NaN NaN NaN NaN 139.47 1 139.47 138.97 139.97 0 0 0 0 0.23508 1 27725 27725 1.1933 0.12188 1 18109 12335 11844 11848 18149 18149 0.027478823396336338 GVLTNKRKTY 10 Unmodified _GVLTNKRKTY_ 0 0 0 ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.265869140625 2 590.345855 1178.67716 NaN NaN NaN NaN NaN NaN NaN 96.495 1 92.576 92.076 93.076 -3.9194 0 0 0 2.8426 1 18515 18515 0.043787 0 1 18110 2236 11845 11849 18150 18150 0.09496481180030969 GVLTNKRKTY 10 Unmodified _GVLTNKRKTY_ 0 0 0 ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.251953125 2 590.345855 1178.67716 NaN NaN NaN NaN NaN NaN NaN 158.25 1 152.98 152.48 153.48 -5.2712 0 0 0 0.22588 1 30704 30704 8.7454 2.5396 1 18111 2236 11845 11849 18151 18151 0.09496481180030969 GVLTSALN 8 Unmodified _GVLTSALN_ 0 0 0 nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1;ENST00000479783.1_1_2:237233333-237240271:-|nuORF nc|ENSG00000132321|Q86XH1-5|IQCA1 nc|ENSG00000132321|Q86XH1-5|IQCA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7208557128906 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 170.1 1 165.23 164.73 165.73 -4.873 0 0 0 0.21486 1 33643 33643 2.5775 0 1 18112 3715 11846 11850 18152 18152 0.03254137943315527 GVLVAPEPAC 10 Unmodified _GVLVAPEPAC_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.0316162109375 3 319.168761 954.484453 NaN NaN NaN NaN NaN NaN NaN 34.548 1 32.295 31.795 32.795 -2.2527 0 0 0 0.22588 1 6062 6062 0.77653 0.31819 1 18113 7957 11847 11851 18153 18153 0.005390227884845444 GVLVAPEPAC 10 Unmodified _GVLVAPEPAC_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.1695251464844 3 319.168761 954.484453 NaN NaN NaN NaN NaN NaN NaN 50.689 1 47.644 47.144 48.144 -3.0453 0 0 0 0.22588 1 9293 9293 0.77653 0.31819 1 18114 7957 11847 11851 18154 18154 0.005390227884845444 GVLVIDVTF 9 Unmodified _GVLVIDVTF_ 0 0 0 ENST00000422593.5_1_3:49462567-49466699:-|nuORF;nc|ENSG00000145029|Q9BSH3-2|NICN1;ENST00000497742.6_1_3:49462781-49466699:-|nuORF;ENSG00000145029|ENST00000273598|NICN1 ENST00000422593.5_1_3:49462567-49466699:-|nuORF ENST00000422593.5_1_3:49462567-49466699:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78204345703125 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 158.06 1 153.26 152.76 153.76 -4.7952 0 0 0 0.19632 1 31432 31432 0.073264 0 1 18115 9681 11848 11852 18155 18155 0.06612126217089553 GVLVLKFLF 9 Unmodified _GVLVLKFLF_ 0 0 0 REV__nc|ENSG00000172780|Q86YS6-2|RAB43 REV__nc|ENSG00000172780|Q86YS6-2|RAB43 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.8919372558594 3 345.891556 1034.65284 NaN NaN NaN NaN NaN NaN NaN 23.245 1 23.245 22.745 23.745 0 0 0 0 0.23508 1 3959 3959 0.26902 0.26902 1 + 18116 18308 11849 11853 18156 18156 0.13689872764462052 GVLVVLTKFLR 11 Unmodified _GVLVVLTKFLR_ 0 0 0 ENSG00000158158|ENST00000377075|CNNM4;CNNM4|p.L438Pfs*9|1|0.32|ENSG00000158158|chr2:96762305-96762306|-/C|frameshift_variant ENSG00000158158|ENST00000377075|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7591552734375 2 622.908091 1243.80163 NaN NaN NaN NaN NaN NaN NaN 145.6 1 140.93 140.43 141.43 -4.6694 0 0 0 0.22632 1 28861 28861 0 0 1 18117 5154 11850 11854 18157 18157 0.1894797866737008 GVLVYQITW 9 Unmodified _GVLVYQITW_ 0 0 0 COL20A1|p.G1120Afs*17|1|0.32|ENSG00000101203|chr20:63325673-63325673|C/-|frameshift_variant;COL20A1|p.P1149Lfs*53|1|0.06|ENSG00000101203|chr20:63326135-63326135|C/-|frameshift_variant;ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1;ENST00000479501.5_1_20:61943331-61950713:+|nuORF;COL20A1|p.L895Yfs*27|1|0.14|ENSG00000101203|chr20:63319072-63319072|C/-|frameshift_variant COL20A1|p.G1120Afs*17|1|0.32|ENSG00000101203|chr20:63325673-63325673|C/-|frameshift_variant COL20A1|p.G1120Afs*17|1|0.32|ENSG00000101203|chr20:63325673-63325673|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20184326171875 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 117.28 1 117.28 116.78 117.78 0 0 0 0 0.23508 1 23101 23101 1.1933 0.41681 1 18118 622 11851 11855 18158 18158 0.05019217482708882 GVLWCLLWLW 10 Unmodified _GVLWCLLWLW_ 0 0 0 ENST00000609742.2_1_10:33177235-33177406:-|nuORF ENST00000609742.2_1_10:33177235-33177406:-|nuORF ENST00000609742.2_1_10:33177235-33177406:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 644.8493041992188 2 644.849187 1287.68382 NaN NaN NaN NaN NaN NaN NaN 11.762 1 11.762 11.262 12.262 0 0 0 0 0.22588 1 1587 1587 0.45834 0 1 18119 11770 11852 11856 18159 18159 0.05148702807036898 GVLYIRKKKR 10 Unmodified _GVLYIRKKKR_ 0 0 0 nc|nan|Q9UK00-2|C3orf18 nc|nan|Q9UK00-2|C3orf18 nc|nan|Q9UK00-2|C3orf18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.986572265625 4 315.962029 1259.81901 -0.9316 -0.00029435 0.58255 0.00018406 -0.34905 -0.00011029 315.9623096938716 12.687 0.13899 11.678 11.59 11.729 -1.0098 5 3 2 0 0 0 0.76679 1 1795 1795 0.15932 0.064481 1 198660 18120 12674 11853 11857 18160 18160 0.19949318993008092 GVLYIRKKKR 10 Unmodified _GVLYIRKKKR_ 0 0 0 nc|nan|Q9UK00-2|C3orf18 nc|nan|Q9UK00-2|C3orf18 nc|nan|Q9UK00-2|C3orf18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.763427734375 2 630.916781 1259.81901 NaN NaN NaN NaN NaN NaN NaN 139.71 1 134.76 134.26 135.26 -4.952 0 0 0 2.8426 1 26877 26877 0 0 1 18121 12674 11853 11857 18161 18161 0.19949318993008092 GVLYIRKKKR 10 Unmodified _GVLYIRKKKR_ 0 0 0 nc|nan|Q9UK00-2|C3orf18 nc|nan|Q9UK00-2|C3orf18 nc|nan|Q9UK00-2|C3orf18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7607421875 2 630.916781 1259.81901 NaN NaN NaN NaN NaN NaN NaN 142.54 1 137.51 137.01 138.01 -5.0261 0 0 0 2.8426 1 27475 27475 0 0 1 18122 12674 11853 11857 18162 18162 0.19949318993008092 GVLYIRKKKR 10 Unmodified _GVLYIRKKKR_ 0 0 0 nc|nan|Q9UK00-2|C3orf18 nc|nan|Q9UK00-2|C3orf18 nc|nan|Q9UK00-2|C3orf18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.76416015625 2 630.916781 1259.81901 NaN NaN NaN NaN NaN NaN NaN 58.566 1 55.361 54.861 55.861 -3.2052 0 0 0 2.8426 1 10931 10931 0 0 1 18123 12674 11853 11857 18163 18163 0.19949318993008092 GVLYIRKKKR 10 Unmodified _GVLYIRKKKR_ 0 0 0 nc|nan|Q9UK00-2|C3orf18 nc|nan|Q9UK00-2|C3orf18 nc|nan|Q9UK00-2|C3orf18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1756286621094 4 315.962029 1259.81901 -2.2938 -0.00072475 1.5416 0.00048709 -0.75217 -0.00023766 315.9628434387061 12.736 0.67523 11.616 11.518 12.193 -1.1206 22 19 2 0 0 0 0.91149 1 1591 1591 0.15932 0.064481 1 231500 18124 12674 11853 11857 18164 18164 0.19949318993008092 GVLYTNTGQL 10 Unmodified _GVLYTNTGQL_ 0 0 0 REV__LACTB2|p.L104Tfs*28|2|0.27|ENSG00000147592|chr8:70657859-70657860|-/T|frameshift_variant REV__LACTB2|p.L104Tfs*28|2|0.27|ENSG00000147592|chr8:70657859-70657860|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2745361328125 2 533.282389 1064.55022 0.10217 5.4485E-05 0.071192 3.7966E-05 0.17336 9.245E-05 533.2823877462582 94.623 1.1955 90.632 89.862 91.058 -3.9907 93 33 4 0 0 0 0.36162 1 18392 18392 14.405 12.663 1 36606000 + 18125 16943 11854 11858 18165 18165 0.020531352350417365 GVLYYRDECYY 11 Unmodified _GVLYYRDECYY_ 0 0 0 REV__nc|ENSG00000123843|P20851-2|C4BPB REV__nc|ENSG00000123843|P20851-2|C4BPB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7653503417969 3 481.879827 1442.61765 NaN NaN NaN NaN NaN NaN NaN 14.887 1 13.677 13.177 14.177 -1.2106 0 0 0 0.23698 1 2011 2011 0.094841 0 1 + 18126 15743 11855 11859 18166 18166 -0.08595202616288589 GVMALLSRLY 10 Unmodified _GVMALLSRLY_ 0 0 0 REV__ENSG00000142252|ENST00000270257|GEMIN7 REV__ENSG00000142252|ENST00000270257|GEMIN7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.20806884765625 3 374.882843 1121.6267 NaN NaN NaN NaN NaN NaN NaN 49.916 1 46.917 46.417 47.417 -2.999 0 0 0 0.22588 1 9131 9131 7.9454 0.84368 1 + 18127 16664 11856 11860 18167 18167 0.07075235530692225 GVMFIIRR 8 Unmodified _GVMFIIRR_ 0 0 0 REV__ENST00000479537.5_1_7:140434399-140447180:-|nuORF REV__ENST00000479537.5_1_7:140434399-140447180:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.1993408203125 3 331.200507 990.579691 NaN NaN NaN NaN NaN NaN NaN 64.859 1 61.401 60.901 61.901 -3.4581 0 0 0 0.21486 1 12130 12130 3.9444 0 1 + 18128 22154 11857 11861 18168 18168 0.08402420770210028 GVMFIIRR 8 Unmodified _GVMFIIRR_ 0 0 0 REV__ENST00000479537.5_1_7:140434399-140447180:-|nuORF REV__ENST00000479537.5_1_7:140434399-140447180:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 331.2011413574219 3 331.200507 990.579691 NaN NaN NaN NaN NaN NaN NaN 64.882 1 61.599 61.099 62.099 -3.2832 0 0 0 0.21486 1 12189 12189 1.8442 0 1 + 18129 22154 11857 11861 18169 18169 0.08402420770210028 GVMGEKDHMVT 11 Unmodified _GVMGEKDHMVT_ 0 0 0 DKC1|p.S255G|1|0.71|ENSG00000130826|chrX:154768424-154768424|A/G|missense_variant DKC1|p.S255G|1|0.71|ENSG00000130826|chrX:154768424-154768424|A/G|missense_variant DKC1|p.S255G|1|0.71|ENSG00000130826|chrX:154768424-154768424|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2808837890625 2 602.278466 1202.54238 NaN NaN NaN NaN NaN NaN NaN 175.55 1 175.55 175.05 176.05 0 0 0 0 0.23379 1 36368 36368 5.2969 0.066215 1 18130 841 11858 11862 18170 18170 -0.05079083348414315 GVMGEKDHMVT 11 Unmodified _GVMGEKDHMVT_ 0 0 0 DKC1|p.S255G|1|0.71|ENSG00000130826|chrX:154768424-154768424|A/G|missense_variant DKC1|p.S255G|1|0.71|ENSG00000130826|chrX:154768424-154768424|A/G|missense_variant DKC1|p.S255G|1|0.71|ENSG00000130826|chrX:154768424-154768424|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2807006835938 2 602.278466 1202.54238 NaN NaN NaN NaN NaN NaN NaN 175.73 1 170.85 170.35 171.35 -4.8739 0 0 0 0.23379 1 34946 34946 5.2969 0.39987 1 18131 841 11858 11862 18171 18171 -0.05079083348414315 GVMGEKDHMVT 11 Unmodified _GVMGEKDHMVT_ 0 0 0 DKC1|p.S255G|1|0.71|ENSG00000130826|chrX:154768424-154768424|A/G|missense_variant DKC1|p.S255G|1|0.71|ENSG00000130826|chrX:154768424-154768424|A/G|missense_variant DKC1|p.S255G|1|0.71|ENSG00000130826|chrX:154768424-154768424|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2800903320312 2 602.278466 1202.54238 NaN NaN NaN NaN NaN NaN NaN 39.919 1 37.43 36.93 37.93 -2.4896 0 0 0 0.22632 1 7132 7132 0.026206 0 1 18132 841 11858 11862 18172 18172 -0.05079083348414315 GVMGEKDHMVT 11 Unmodified _GVMGEKDHMVT_ 0 0 0 DKC1|p.S255G|1|0.71|ENSG00000130826|chrX:154768424-154768424|A/G|missense_variant DKC1|p.S255G|1|0.71|ENSG00000130826|chrX:154768424-154768424|A/G|missense_variant DKC1|p.S255G|1|0.71|ENSG00000130826|chrX:154768424-154768424|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2899169921875 2 602.278466 1202.54238 NaN NaN NaN NaN NaN NaN NaN 123.36 1 118.77 118.27 119.27 -4.5926 0 0 0 0.23018 1 23747 23747 8.1555 0.24537 1 18133 841 11858 11862 18173 18173 -0.05079083348414315 GVMLHCGP 8 Unmodified _GVMLHCGP_ 0 0 0 ENST00000336440.3_1_14:69260917-69261214:-|nuORF ENST00000336440.3_1_14:69260917-69261214:-|nuORF ENST00000336440.3_1_14:69260917-69261214:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 407.1915588378906 2 407.190934 812.367315 NaN NaN NaN NaN NaN NaN NaN 41.557 1 41.557 41.057 42.057 0 0 0 0 0.23294 1 7755 7755 0.62683 0 1 18134 8807 11859 11863 18174 18174 -0.04637413632110565 GVMLHVEM 8 Unmodified _GVMLHVEM_ 0 0 0 ENST00000504941.1_1_5:106762801-107006392:-|nuORF ENST00000504941.1_1_5:106762801-107006392:-|nuORF ENST00000504941.1_1_5:106762801-107006392:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2254638671875 2 458.224974 914.435394 NaN NaN NaN NaN NaN NaN NaN 150.57 1 145.37 144.87 145.87 -5.1994 0 0 0 0.23711 1 29178 29178 0.0082765 0 1 18135 10662 11860 11864 18175 18175 -0.02524588772109837 GVMLRLVQ 8 Unmodified _GVMLRLVQ_ 0 0 0 REV__ENSG00000166869|ENST00000300113|CHP2 REV__ENSG00000166869|ENST00000300113|CHP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23870849609375 2 458.275855 914.537157 NaN NaN NaN NaN NaN NaN NaN 81.734 1 78.177 77.677 78.677 -3.557 0 0 0 0.21039 1 15967 15967 16.942 2.104 1 + 18136 17881 11861 11865 18176 18176 0.07647025641949767 GVMLWEMF 8 Unmodified _GVMLWEMF_ 0 0 0 TNK1|p.T312M|1|0.35|ENSG00000174292|chr17:7384552-7384552|C/T|missense_variant TNK1|p.T312M|1|0.35|ENSG00000174292|chr17:7384552-7384552|C/T|missense_variant TNK1|p.T312M|1|0.35|ENSG00000174292|chr17:7384552-7384552|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.1592102050781 3 338.159208 1011.4558 NaN NaN NaN NaN NaN NaN NaN 68.04 1 64.931 64.431 65.431 -3.1086 0 0 0 0.21486 1 13207 13207 1.8442 0 1 18137 25865 11862 11866 18177 18177 -0.04947418112305968 GVMMDTGY 8 Unmodified _GVMMDTGY_ 0 0 0 REV__ENST00000564709.5_1_16:1827100-1828401:-|nuORF REV__ENST00000564709.5_1_16:1827100-1828401:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2169494628906 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 76.249 1 76.249 75.749 76.749 0 0 0 0 0.21486 1 14818 14818 5.7604 0.52976 1 + 18138 17479 11863 11867 18178 18178 -0.10045147314099268 GVMMDTGY 8 Unmodified _GVMMDTGY_ 0 0 0 REV__ENST00000564709.5_1_16:1827100-1828401:-|nuORF REV__ENST00000564709.5_1_16:1827100-1828401:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21661376953125 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 81.032 1 81.032 80.532 81.532 0 0 0 0 0.21486 1 15778 15778 6.3541 1.1234 1 + 18139 17479 11863 11867 18179 18179 -0.10045147314099268 GVMMDTGY 8 Unmodified _GVMMDTGY_ 0 0 0 REV__ENST00000564709.5_1_16:1827100-1828401:-|nuORF REV__ENST00000564709.5_1_16:1827100-1828401:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2164306640625 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 65.254 1 62.207 61.707 62.707 -3.047 0 0 0 0.21486 1 12627 12627 6.3541 1.1234 1 + 18140 17479 11863 11867 18180 18180 -0.10045147314099268 GVMMDTGY 8 Unmodified _GVMMDTGY_ 0 0 0 REV__ENST00000564709.5_1_16:1827100-1828401:-|nuORF REV__ENST00000564709.5_1_16:1827100-1828401:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2275085449219 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 66.483 1 63.436 62.936 63.936 -3.047 0 0 0 0.23711 1 12883 12883 0.0082765 0 1 + 18141 17479 11863 11867 18181 18181 -0.10045147314099268 GVMMDTGY 8 Unmodified _GVMMDTGY_ 0 0 0 REV__ENST00000564709.5_1_16:1827100-1828401:-|nuORF REV__ENST00000564709.5_1_16:1827100-1828401:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2356262207031 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 66.634 1 63.526 63.026 64.026 -3.1086 0 0 0 0.21486 1 12916 12916 5.7604 0 1 + 18142 17479 11863 11867 18182 18182 -0.10045147314099268 GVMMDTGY 8 Unmodified _GVMMDTGY_ 0 0 0 REV__ENST00000564709.5_1_16:1827100-1828401:-|nuORF REV__ENST00000564709.5_1_16:1827100-1828401:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21624755859375 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 60.298 1 57.074 56.574 57.574 -3.2237 0 0 0 0.21486 1 11277 11277 6.3541 0.59368 1 + 18143 17479 11863 11867 18183 18183 -0.10045147314099268 GVMMILMI 8 Unmodified _GVMMILMI_ 0 0 0 REV__HCN1|p.T196Yfs*20|1|0.06|ENSG00000164588|chr5:45645448-45645449|-/GGATTATA|frameshift_variant REV__HCN1|p.T196Yfs*20|1|0.06|ENSG00000164588|chr5:45645448-45645449|-/GGATTATA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 454.24560546875 2 454.244321 906.474088 NaN NaN NaN NaN NaN NaN NaN 161.48 1 156.26 155.76 156.76 -5.2216 0 0 0 0.23711 1 31340 31340 0.13829 0.015425 1 + 18144 17692 11864 11868 18184 18184 0.017110005380573057 GVMNEAVCTY 10 Unmodified _GVMNEAVCTY_ 0 0 0 REV__ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant REV__ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.775634765625 2 543.73336 1085.45217 NaN NaN NaN NaN NaN NaN NaN 119.64 1 119.64 119.14 120.14 0 0 0 0 2.8426 1 23577 23577 0.26539 0 1 + 18145 18121 11865 11869 18185 18185 -0.08714132676823283 GVMPIGHY 8 Unmodified _GVMPIGHY_ 0 0 0 REV__ENSG00000197888|ENST00000317746|UGT2B17;REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2163391113281 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 104.15 1 104.15 103.65 104.65 0 0 0 0 0.21486 1 20468 20468 6.3541 0.59368 1 + 18146 19368;17243 11866 11870 18186 18186 -0.019854982088986617 GVMPIGHY 8 Unmodified _GVMPIGHY_ 0 0 0 REV__ENSG00000197888|ENST00000317746|UGT2B17;REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21661376953125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 130.55 1 130.55 130.05 131.05 0 0 0 0 0.21486 1 25804 25804 2.8892 0.31174 1 + 18147 19368;17243 11866 11870 18187 18187 -0.019854982088986617 GVMPIGHY 8 Unmodified _GVMPIGHY_ 0 0 0 REV__ENSG00000197888|ENST00000317746|UGT2B17;REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.216796875 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 65.504 1 62.457 61.957 62.957 -3.047 0 0 0 0.21486 1 12679 12679 6.3541 1.1234 1 + 18148 19368;17243 11866 11870 18188 18188 -0.019854982088986617 GVMPIGHY 8 Unmodified _GVMPIGHY_ 0 0 0 REV__ENSG00000197888|ENST00000317746|UGT2B17;REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21661376953125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 106.66 1 102.4 101.9 102.9 -4.2638 0 0 0 0.21486 1 20997 20997 6.3541 1.1234 1 + 18149 19368;17243 11866 11870 18189 18189 -0.019854982088986617 GVMPIGHY 8 Unmodified _GVMPIGHY_ 0 0 0 REV__ENSG00000197888|ENST00000317746|UGT2B17;REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2164611816406 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 108.44 1 104.12 103.62 104.62 -4.32 0 0 0 0.21486 1 21366 21366 6.3541 0.59368 1 + 18150 19368;17243 11866 11870 18190 18190 -0.019854982088986617 GVMPIGHY 8 Unmodified _GVMPIGHY_ 0 0 0 REV__ENSG00000197888|ENST00000317746|UGT2B17;REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2161865234375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 113.06 1 108.61 108.11 109.11 -4.4539 0 0 0 0.21486 1 22276 22276 6.3541 0.59368 1 + 18151 19368;17243 11866 11870 18191 18191 -0.019854982088986617 GVMPIGHY 8 Unmodified _GVMPIGHY_ 0 0 0 REV__ENSG00000197888|ENST00000317746|UGT2B17;REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2164611816406 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 105.37 1 100.99 100.49 101.49 -4.3764 0 0 0 0.21486 1 20197 20197 6.3541 1.1234 1 + 18152 19368;17243 11866 11870 18192 18192 -0.019854982088986617 GVMPIGHY 8 Unmodified _GVMPIGHY_ 0 0 0 REV__ENSG00000197888|ENST00000317746|UGT2B17;REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2170715332031 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 106.74 1 102.33 101.83 102.83 -4.4121 0 0 0 0.21486 1 20478 20478 6.3541 0.14832 1 + 18153 19368;17243 11866 11870 18193 18193 -0.019854982088986617 GVMPIGHY 8 Unmodified _GVMPIGHY_ 0 0 0 REV__ENSG00000197888|ENST00000317746|UGT2B17;REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21539306640625 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 91.369 1 87.561 87.061 88.061 -3.8083 0 0 0 0.21486 1 17492 17492 6.3541 0.59368 1 + 18154 19368;17243 11866 11870 18194 18194 -0.019854982088986617 GVMPIGHY 8 Unmodified _GVMPIGHY_ 0 0 0 REV__ENSG00000197888|ENST00000317746|UGT2B17;REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2157897949219 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 107.95 1 103.81 103.31 104.31 -4.135 0 0 0 0.21486 1 20766 20766 6.3541 0 1 + 18155 19368;17243 11866 11870 18195 18195 -0.019854982088986617 GVMPIGHY 8 Unmodified _GVMPIGHY_ 0 0 0 REV__ENSG00000197888|ENST00000317746|UGT2B17;REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21600341796875 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 108.18 1 104.05 103.55 104.55 -4.135 0 0 0 0.21486 1 20814 20814 6.3541 0.59368 1 + 18156 19368;17243 11866 11870 18196 18196 -0.019854982088986617 GVMSSRDIEE 10 Unmodified _GVMSSRDIEE_ 0 0 0 SP4|p.K644Rfs*195|1|0.2|ENSG00000105866|chr7:21481942-21481942|A/-|frameshift_variant SP4|p.K644Rfs*195|1|0.2|ENSG00000105866|chr7:21481942-21481942|A/-|frameshift_variant SP4|p.K644Rfs*195|1|0.2|ENSG00000105866|chr7:21481942-21481942|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21453857421875 3 374.841372 1121.50229 -0.67067 -0.00025139 1.3667 0.00051228 0.69599 0.00026088 375.1773785837514 7.5189 0.38939 6.4743 6.2596 6.649 -1.0446 12 10 2 0 0 0 0.76603 1 660 660 0.69767 0.23933 1 85859 18157 25771 11867 11871 18197 18197 -0.05360306747297727 GVMSSRDIEE 10 Unmodified _GVMSSRDIEE_ 0 0 0 SP4|p.K644Rfs*195|1|0.2|ENSG00000105866|chr7:21481942-21481942|A/-|frameshift_variant SP4|p.K644Rfs*195|1|0.2|ENSG00000105866|chr7:21481942-21481942|A/-|frameshift_variant SP4|p.K644Rfs*195|1|0.2|ENSG00000105866|chr7:21481942-21481942|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 374.841372 1121.50229 -2.2943 -0.00086002 4.3174 0.0016184 2.0231 0.00075833 375.1786712261547 7.7345 0.23485 6.7196 6.6362 6.8711 -1.0148 0.12265 0.002023 NaN 0.69767 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 48794 18158 25771 11867 11871 -0.05360306747297727 GVMVAALN 8 Unmodified _GVMVAALN_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A;REV__ENSG00000116032|ENST00000234389|GRIN3B REV__ENSG00000198785|ENST00000361820|GRIN3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71295166015625 2 387.712556 773.41056 -0.039003 -1.5122E-05 0.27704 0.00010741 0.23804 9.2289E-05 387.71258231601615 32.286 0.78275 30.056 29.724 30.507 -2.2305 54 21 3 0 0 0 8448 1 5830 5830 0.12286 0 1 3587300 + 18159 19448;15463 11868 11872 18198 18198 0.01479099416826557 GVMVAALN 8 Unmodified _GVMVAALN_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A;REV__ENSG00000116032|ENST00000234389|GRIN3B REV__ENSG00000198785|ENST00000361820|GRIN3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7135314941406 2 387.712556 773.41056 NaN NaN NaN NaN NaN NaN NaN 12.464 1 11.454 10.954 11.954 -1.0098 0 0 0 0.21486 1 1732 1732 2.8892 2.0956 1 + 18160 19448;15463 11868 11872 18199 18199 0.01479099416826557 GVMVAALN 8 Unmodified _GVMVAALN_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A;REV__ENSG00000116032|ENST00000234389|GRIN3B REV__ENSG00000198785|ENST00000361820|GRIN3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7125549316406 2 387.712556 773.41056 0.25962 0.00010066 -0.083932 -3.2541E-05 0.17568 6.8115E-05 387.71244762254594 32.369 0.77428 30.342 29.798 30.572 -2.0264 52 21 3 0 0 0 8448 1 5572 5572 0.0082765 0 1 3819600 + 18161 19448;15463 11868 11872 18200 18200 0.01479099416826557 GVMVGRVG 8 Unmodified _GVMVGRVG_ 0 0 0 REV__ENST00000484122.5_1_17:12920829-12920919:-|nuORF REV__ENST00000484122.5_1_17:12920829-12920919:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7184143066406 2 387.718173 773.421793 NaN NaN NaN NaN NaN NaN NaN 142.38 1 137.36 136.86 137.86 -5.0261 0 0 0 0.22934 1 27444 27444 0.62683 0.37535 1 + 18162 22209 11869 11873 18201 18201 0.026019215109727156 GVMVGRVG 8 Unmodified _GVMVGRVG_ 0 0 0 REV__ENST00000484122.5_1_17:12920829-12920919:-|nuORF REV__ENST00000484122.5_1_17:12920829-12920919:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7184143066406 2 387.718173 773.421793 NaN NaN NaN NaN NaN NaN NaN 142.4 1 137.38 136.88 137.88 -5.0261 0 0 0 0.21323 1 27448 27448 14.582 5.2343 1 + 18163 22209 11869 11873 18202 18202 0.026019215109727156 GVMVGRVG 8 Unmodified _GVMVGRVG_ 0 0 0 REV__ENST00000484122.5_1_17:12920829-12920919:-|nuORF REV__ENST00000484122.5_1_17:12920829-12920919:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7192077636719 2 387.718173 773.421793 NaN NaN NaN NaN NaN NaN NaN 161.74 1 156.59 156.09 157.09 -5.1438 0 0 0 0.23711 1 31410 31410 0.0082765 0 1 + 18164 22209 11869 11873 18203 18203 0.026019215109727156 GVNDDGDDDGD 11 Unmodified _GVNDDGDDDGD_ 0 0 0 SPARCL1|p.D338N|1|0.07|ENSG00000152583|chr4:87493788-87493788|C/T|missense_variant SPARCL1|p.D338N|1|0.07|ENSG00000152583|chr4:87493788-87493788|C/T|missense_variant SPARCL1|p.D338N|1|0.07|ENSG00000152583|chr4:87493788-87493788|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7732543945312 2 547.181254 1092.34796 0.33228 0.00018182 -3.4693 -0.0018983 -3.137 -0.0017165 547.1779304106127 142.4 0.10696 142.4 142.33 142.44 0 4 2 2 0 0 0 0.89038 1 28399 28399 0.00056442 0 1 1024900 18165 25776 11870 11874 18204 18204 -0.19452464698974836 GVNDFYCDY 9 Unmodified _GVNDFYCDY_ 0 0 0 REV__nc|ENSG00000106853|Q14914-2|PTGR1 REV__nc|ENSG00000106853|Q14914-2|PTGR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7726440429688 2 548.208032 1094.40151 NaN NaN NaN NaN NaN NaN NaN 117.02 1 112.53 112.03 113.03 -4.486 0 0 0 0.19634 1 23067 23067 0.073264 0 1 + 18166 15068 11871 11875 18205 18205 -0.14191338730165626 GVNEKESLYL 10 Unmodified _GVNEKESLYL_ 0 0 0 REV__ENSG00000166004|ENST00000325212|CEP295 REV__ENSG00000166004|ENST00000325212|CEP295 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.329345703125 2 576.300778 1150.587 NaN NaN NaN NaN NaN NaN NaN 130.98 1 126.35 125.85 126.85 -4.6359 0 0 0 2.8426 1 25812 25812 0.043787 0 1 + 18167 17816 11872 11876 18206 18206 0.017733870609617952 GVNGLVLSAVD 11 Unmodified _GVNGLVLSAVD_ 0 0 0 ENSG00000141639|ENST00000400384|MAPK4 ENSG00000141639|ENST00000400384|MAPK4 ENSG00000141639|ENST00000400384|MAPK4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2679443359375 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 118.13 1 118.13 117.63 118.63 0 0 0 0 0.22632 1 23271 23271 0.026206 0 1 18168 4389 11873 11877 18207 18207 0.04629421752088092 GVNGLVLSAVD 11 Unmodified _GVNGLVLSAVD_ 0 0 0 ENSG00000141639|ENST00000400384|MAPK4 ENSG00000141639|ENST00000400384|MAPK4 ENSG00000141639|ENST00000400384|MAPK4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2717895507812 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 122.31 1 117.63 117.13 118.13 -4.6873 0 0 0 0.22943 1 23485 23485 8.7454 0.15213 1 18169 4389 11873 11877 18208 18208 0.04629421752088092 GVNIIAAG 8 Unmodified _GVNIIAAG_ 0 0 0 REV__ENST00000320415.6_1_7:82219286-82219658:-|nuORF REV__ENST00000320415.6_1_7:82219286-82219658:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5527038574219 2 357.710871 713.407189 NaN NaN NaN NaN NaN NaN NaN 56.127 1 56.127 55.627 56.627 0 0 0 0 0.23711 1 10717 10717 0.12286 0 1 + 18170 20543 11874 11878 18209 18209 0.039021726344572016 GVNIRWIRE 9 Unmodified _GVNIRWIRE_ 0 0 0 HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|21|2|anti-sense HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|21|2|anti-sense HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|21|2|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.20599365234375 3 381.552485 1141.63563 -0.068892 -2.6286E-05 -0.07664 -2.9242E-05 -0.14553 -5.5528E-05 381.88681497664646 26.619 0.37873 26.619 26.495 26.873 0 16 10 2 0 0 0 0.87918 1 4703 4703 2.7352 0.45242 1 367920 18171 11893 11875 11879 18210 18210 0.07047345211367428 GVNIRWIRE 9 Unmodified _GVNIRWIRE_ 0 0 0 HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|21|2|anti-sense HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|21|2|anti-sense HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|21|2|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2066955566406 3 381.552485 1141.63563 -0.30029 -0.00011457 0.40453 0.00015435 0.10425 3.9775E-05 381.8870409307078 28.744 0.48731 26.748 26.484 26.971 -1.9962 21 13 2 0 0 0 0.87609 1 4859 4859 4.5289 2.9366 1 498290 18172 11893 11875 11879 18211 18211 0.07047345211367428 GVNKGRGS 8 Unmodified _GVNKGRGS_ 0 0 0 PCSK2|p.G299S|1|0.48|ENSG00000125851|chr20:17453751-17453751|G/A|missense_variant PCSK2|p.G299S|1|0.48|ENSG00000125851|chr20:17453751-17453751|G/A|missense_variant PCSK2|p.G299S|1|0.48|ENSG00000125851|chr20:17453751-17453751|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7129821777344 2 387.714476 773.4144 NaN NaN NaN NaN NaN NaN NaN 31.347 1 29.32 28.82 29.82 -2.0264 0 0 0 0.23366 1 5409 5409 0.0082765 0 1 18173 12765 11876 11880 18212 18212 0.018629052348956066 GVNLNTQLN 9 Unmodified _GVNLNTQLN_ 0 0 0 REV__ENST00000269499.9_2_18:60244002-60244146:+|nuORF REV__ENST00000269499.9_2_18:60244002-60244146:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 486.757568359375 2 486.759081 971.503609 NaN NaN NaN NaN NaN NaN NaN 158.91 1 154.12 153.62 154.62 -4.7952 0 0 0 0.17788 1 31605 31605 0.40827 0.15679 1 + 18174 20265 11877 11881 18213 18213 0.016716954037519827 GVNNIRIQ 8 Unmodified _GVNNIRIQ_ 0 0 0 REV__ENST00000460935.1_1_19:12502490-12502811:-|nuORF REV__ENST00000460935.1_1_19:12502490-12502811:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 457.7561950683594 2 457.264333 912.514114 0.27562 0.00012603 -0.13064 -5.9737E-05 0.14498 6.6295E-05 457.26420867369455 152.74 0.46834 152.74 152.45 152.92 0 19 12 2 0 0 0 0.89276 1 30615 30615 0.12286 0 1 2773800 + 18175 21888 11878 11882 18214 18214 0.054357228488470355 GVNQELAYFY 10 Unmodified _GVNQELAYFY_ 0 0 0 CON__P02662 CON__P02662 CON__P02662 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2871704101562 2 602.287671 1202.56079 NaN NaN NaN NaN NaN NaN NaN 18.069 1 16.554 16.054 17.054 -1.5148 0 0 0 0.22588 1 2657 2657 3.5965 0 1 + 18176 653 11879 11883 18215 18215 -0.03238882110531449 GVNRRQDKY 9 Unmodified _GVNRRQDKY_ 0 0 0 REV__ENSG00000184384|ENST00000524717|MAML2 REV__ENSG00000184384|ENST00000524717|MAML2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 568.7594604492188 2 568.301978 1134.5894 0.62459 0.00035495 0.63277 0.00035961 1.2574 0.00071456 568.3022374305303 111.43 0.66324 107.2 106.97 107.63 -4.2289 28 18 3 0 0 0 0.58066 1 21504 21504 1.2148 0.94944 1 1343700 + 18177 18894 11880 11884 18216 18216 0.027492803092854956 GVNRRQDKY 9 Unmodified _GVNRRQDKY_ 0 0 0 REV__ENSG00000184384|ENST00000524717|MAML2 REV__ENSG00000184384|ENST00000524717|MAML2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 568.301978 1134.5894 0.46618 0.00026493 0.79469 0.00045162 1.2609 0.00071655 568.3026037150765 107.13 0.54741 107.13 107.03 107.58 0 -0.067369 -0.00041325 NaN 1.2148 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1647300 + 18178 18894 11880 11884 0.027492803092854956 GVNRRQDKY 9 Unmodified _GVNRRQDKY_ 0 0 0 REV__ENSG00000184384|ENST00000524717|MAML2 REV__ENSG00000184384|ENST00000524717|MAML2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 568.301978 1134.5894 -0.39785 -0.0002261 1.4709 0.00083593 1.0731 0.00060983 568.3028621306529 111.64 0.41757 107.21 107 107.41 -4.4231 0.0171 0.00035535 NaN 1.2148 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2892200 + 18179 18894 11880 11884 0.027492803092854956 GVNRRQDKY 9 Unmodified _GVNRRQDKY_ 0 0 0 REV__ENSG00000184384|ENST00000524717|MAML2 REV__ENSG00000184384|ENST00000524717|MAML2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 568.301978 1134.5894 -0.082773 -4.704E-05 2.2567 0.0012825 2.1739 0.0012355 568.3035180132042 111.73 0.45116 107.24 106.96 107.41 -4.4915 0.047704 0.0012485 NaN 1.2148 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1679100 + 18180 18894 11880 11884 0.027492803092854956 GVNRSPSIS 9 Unmodified _GVNRSPSIS_ 0 0 0 REV__ENSG00000151612|ENST00000508784|ZNF827 REV__ENSG00000151612|ENST00000508784|ZNF827 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 306.1654968261719 3 306.166408 915.477394 NaN NaN NaN NaN NaN NaN NaN 179.58 1 174.71 174.21 175.21 -4.868 0 0 0 0.23508 1 35780 35780 0.96228 0.50394 1 + 18181 17074 11881 11885 18217 18217 0.016274262322895083 GVNRTEDR 8 Unmodified _GVNRTEDR_ 0 0 0 REV__nc|ENSG00000005961|P08514-3|ITGA2B REV__nc|ENSG00000005961|P08514-3|ITGA2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1603088378906 3 316.161545 945.462806 NaN NaN NaN NaN NaN NaN NaN 27.678 1 25.923 25.423 26.423 -1.7552 0 0 0 0.21486 1 4642 4642 1.6526 0 1 + 18182 13866 11882 11886 18218 18218 -0.012106459158758298 GVNRTEDR 8 Unmodified _GVNRTEDR_ 0 0 0 REV__nc|ENSG00000005961|P08514-3|ITGA2B REV__nc|ENSG00000005961|P08514-3|ITGA2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.175537109375 3 316.161545 945.462806 NaN NaN NaN NaN NaN NaN NaN 13.447 1 12.294 11.794 12.794 -1.1532 0 0 0 0.21486 1 1700 1700 0.45834 0 1 + 18183 13866 11882 11886 18219 18219 -0.012106459158758298 GVNSPRGY 8 Unmodified _GVNSPRGY_ 0 0 0 ENST00000484121.5_1_19:54710381-54710513:+|nuORF ENST00000484121.5_1_19:54710381-54710513:+|nuORF ENST00000484121.5_1_19:54710381-54710513:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2375793457031 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 102.47 1 98.45 97.95 98.95 -4.0212 0 0 0 0.21486 1 19694 19694 6.3541 0.59368 1 18184 10427 11883 11887 18220 18220 -0.01620514484955038 GVNVTLLQA 9 Unmodified _GVNVTLLQA_ 0 0 0 REV__ENST00000470325.1_1_17:15231272-15234902:-|nuORF REV__ENST00000470325.1_1_17:15231272-15234902:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23626708984375 2 457.768917 913.523281 0.18414 8.4292E-05 0.46026 0.00021069 0.64439 0.00029498 457.7691070080249 16.387 0.44894 16.387 16.129 16.578 0 19 12 2 0 0 0 0.86532 1 2576 2576 2.0598 0 1 837910 + 18185 22027 11884 11888 18221 18221 0.06306071414519465 GVNVTLLQA 9 Unmodified _GVNVTLLQA_ 0 0 0 REV__ENST00000470325.1_1_17:15231272-15234902:-|nuORF REV__ENST00000470325.1_1_17:15231272-15234902:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.768917 913.523281 -0.30997 -0.00014189 0.54609 0.00024999 0.23613 0.00010809 457.76923255866745 17.504 0.24035 16.193 16.066 16.307 -1.3109 -0.083354 -7.3485E-05 NaN 2.0598 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 473550 + 18186 22027 11884 11888 0.06306071414519465 GVNVTLLQA 9 Unmodified _GVNVTLLQA_ 0 0 0 REV__ENST00000470325.1_1_17:15231272-15234902:-|nuORF REV__ENST00000470325.1_1_17:15231272-15234902:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 457.768917 913.523281 -0.49031 -0.00022445 0.97577 0.00044668 0.48546 0.00022223 457.76940994099834 17.52 0.27656 16.248 16.074 16.351 -1.2722 -0.028016 0.0003199 NaN 2.0598 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 324290 + 18187 22027 11884 11888 0.06306071414519465 GVNYTQLSI 9 Unmodified _GVNYTQLSI_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.0052795410156 3 332.178313 993.513111 -0.38198 -0.00012689 0.095108 3.1593E-05 -0.28687 -9.5293E-05 332.1783015721855 28.63 0.87478 28.63 28.215 29.09 0 33 24 2 0 0 0 0.88413 1 5115 5115 1.0715 1.0715 1 939250 18188 5053 11885 11889 18222 18222 0.016094636893058123 GVNYTQLSI 9 Unmodified _GVNYTQLSI_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 332.178313 993.513111 0.32065 0.00010651 -0.56088 -0.00018631 -0.24023 -7.9799E-05 332.17806182700497 30.537 0.77371 28.644 28.381 29.155 -1.8928 0.03215 -0.00034456 NaN 1.0715 28 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1562300 18189 5053 11885 11889 0.016094636893058123 GVNYTQLSI 9 Unmodified _GVNYTQLSI_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 332.178313 993.513111 -0.15656 -5.2007E-05 -0.029686 -9.8609E-06 -0.18625 -6.1867E-05 332.1782571616873 30.665 0.9509 28.591 28.146 29.097 -2.0743 -0.020871 0.00018479 NaN 1.0715 38 26 2 NaN NaN NaN NaN 0 NaN NaN 0 692230 18190 5053 11885 11889 0.016094636893058123 GVPAPRERLR 10 Unmodified _GVPAPRERLR_ 0 0 0 REV__nc|ENSG00000203706|Q5TG53-2|SERTAD4-AS1 REV__nc|ENSG00000203706|Q5TG53-2|SERTAD4-AS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3328857421875 2 575.843813 1149.67307 0.12812 7.3774E-05 2.9197 0.0016813 3.0478 0.001755 575.8449716336996 56.218 0.10705 56.218 56.151 56.258 0 4 2 2 0 0 0 1.128 1 10728 10728 0.043787 0 1 346870 + 18191 21680 11886 11890 18223 18223 0.10422436476960684 GVPAVVVTIIL 11 Unmodified _GVPAVVVTIIL_ 0 0 0 nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;nc|ENSG00000173698|Q8IZP9-10|ADGRG2 nc|ENSG00000173698|Q8IZP9-9|ADGRG2 nc|ENSG00000173698|Q8IZP9-9|ADGRG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.260498046875 2 540.854993 1079.69543 NaN NaN NaN NaN NaN NaN NaN 171.18 1 166.31 165.81 166.81 -4.873 0 0 0 0.23199 1 33914 33914 6.7232 0.51738 1 18192 6306 11887 11891 18224 18224 0.15877223102074822 GVPCGGSP 8 Unmodified _GVPCGGSP_ 0 0 0 ENST00000576229.5_2_17:4843824-4845751:+|nuORF ENST00000576229.5_2_17:4843824-4845751:+|nuORF ENST00000576229.5_2_17:4843824-4845751:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.1922607421875 2 337.152332 672.29011 NaN NaN NaN NaN NaN NaN NaN 41.381 1 38.842 38.342 39.342 -2.5398 0 0 0 0.2396 1 7434 7434 0 0 1 18193 11462 11888 11892 18225 18225 -0.05914308576791427 GVPDARTEA 9 Unmodified _GVPDARTEA_ 0 0 0 nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-2|NUP214 nc|ENSG00000126883|P35658-2|NUP214 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2291564941406 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 149.14 1 144.43 143.93 144.93 -4.7095 0 0 0 0.19656 1 29620 29620 0.029283 0 1 18194 3454 11889 11893 18226 18226 -0.0148856652166387 GVPEVNCR 8 Unmodified _GVPEVNCR_ 0 0 0 REV__MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant REV__MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.216064453125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 89.086 1 85.042 84.542 85.542 -4.0443 0 0 0 0.21486 1 16973 16973 5.7604 0 1 + 18195 16387 11890 11894 18227 18227 -0.023875877026057424 GVPEVNCR 8 Unmodified _GVPEVNCR_ 0 0 0 REV__MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant REV__MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2165832519531 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 88.323 1 84.573 84.073 85.073 -3.7501 0 0 0 0.2074 1 16903 16903 19.439 4.8573 1 + 18196 16387 11890 11894 18228 18228 -0.023875877026057424 GVPGFMGPPG 10 Unmodified _GVPGFMGPPG_ 0 0 0 COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1;ENST00000341807.8_1_8:139601498-139734429:-|nuORF;nc|ENSG00000169436|Q8NFW1-3|COL22A1 COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2256164550781 2 458.223288 914.432024 NaN NaN NaN NaN NaN NaN NaN 33.799 1 31.652 31.152 32.152 -2.1468 0 0 0 2.8426 1 5908 5908 0.84494 0.57955 1 18197 624 11891 11895 18229 18229 -0.028615155544457593 GVPGIEQTGNL 11 Unmodified _GVPGIEQTGNL_ 0 0 0 REV__nc|ENSG00000204936|Q8N6Q3-2|CD177 REV__nc|ENSG00000204936|Q8N6Q3-2|CD177 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7880249023438 2 542.785296 1083.55604 0.17952 9.7443E-05 0.14626 7.9388E-05 0.32578 0.00017683 542.7851323107828 74.84 0.96928 71.163 70.656 71.626 -3.6764 111 27 6 0 0 0 0.22786 1 14129 14129 21.59 0 1 23902000 + 18198 13324 11892 11896 18230 18230 0.01760233746722406 GVPGIKGDRG 10 Unmodified _GVPGIKGDRG_ 0 0 0 ENST00000487017.5_1_3:48609337-48621784:-|nuORF;COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant;COL7A1|p.G2177Wfs*113|1|0.1|ENSG00000114270|chr3:48573864-48573865|-/G|frameshift_variant;COL7A1|p.P2298Lfs*90|1|0.18|ENSG00000114270|chr3:48572678-48572678|G/-|frameshift_variant;COL7A1|p.S2715Vfs*71|1|0.4|ENSG00000114270|chr3:48566991-48566991|G/-|frameshift_variant;nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1 ENST00000487017.5_1_3:48609337-48621784:-|nuORF ENST00000487017.5_1_3:48609337-48621784:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.1813049316406 3 319.182169 954.524678 NaN NaN NaN NaN NaN NaN NaN 47.172 1 44.223 43.723 44.723 -2.9499 0 0 0 0.22588 1 8606 8606 0.69767 0.24315 1 18199 10462 11893 11897 18231 18231 0.045597055032772005 GVPGPFGP 8 Unmodified _GVPGPFGP_ 0 0 0 REV__nc|ENSG00000169031|Q01955-5|COL4A3 REV__nc|ENSG00000169031|Q01955-5|COL4A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 364.1842041015625 2 364.192314 726.370075 NaN NaN NaN NaN NaN NaN NaN 57.611 1 54.406 53.906 54.906 -3.2052 0 0 0 0.23711 1 10737 10737 0.12286 0 1 + 18200 18070 11894 11898 18232 18232 -0.004054989112887597 GVPGPLGP 8 Unmodified _GVPGPLGP_ 0 0 0 REV__COL7A1|p.P1990Qfs*15|1|0.14|ENSG00000114270|chr3:48575636-48575636|G/-|frameshift_variant REV__COL7A1|p.P1990Qfs*15|1|0.14|ENSG00000114270|chr3:48575636-48575636|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.201171875 2 347.200139 692.385725 NaN NaN NaN NaN NaN NaN NaN 55.59 1 52.707 52.207 53.207 -2.8837 0 0 0 0.22722 1 10642 10642 6.1918 0 1 + 18201 13498 11895 11899 18233 18233 0.027227876057509093 GVPGRGSLLD 10 Unmodified _GVPGRGSLLD_ 0 0 0 ENST00000602583.5_1_16:85741146-85741365:-|nuORF ENST00000602583.5_1_16:85741146-85741365:-|nuORF ENST00000602583.5_1_16:85741146-85741365:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.2005615234375 3 324.182058 969.524344 NaN NaN NaN NaN NaN NaN NaN 69.965 1 69.965 69.465 70.465 0 0 0 0 0.22588 1 13548 13548 0.77653 0 1 18202 11714 11896 11900 18234 18234 0.03836285783427229 GVPGRGSLLD 10 Unmodified _GVPGRGSLLD_ 0 0 0 ENST00000602583.5_1_16:85741146-85741365:-|nuORF ENST00000602583.5_1_16:85741146-85741365:-|nuORF ENST00000602583.5_1_16:85741146-85741365:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.16876220703125 3 324.182058 969.524344 NaN NaN NaN NaN NaN NaN NaN 70.081 1 70.081 69.581 70.581 0 0 0 0 0.22588 1 13570 13570 0.77653 0 1 18203 11714 11896 11900 18235 18235 0.03836285783427229 GVPGRGSLLD 10 Unmodified _GVPGRGSLLD_ 0 0 0 ENST00000602583.5_1_16:85741146-85741365:-|nuORF ENST00000602583.5_1_16:85741146-85741365:-|nuORF ENST00000602583.5_1_16:85741146-85741365:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1520690917969 3 324.182058 969.524344 NaN NaN NaN NaN NaN NaN NaN 70.421 1 70.421 69.921 70.921 0 0 0 0 0.22588 1 13641 13641 0.77653 0 1 18204 11714 11896 11900 18236 18236 0.03836285783427229 GVPIAHVG 8 Unmodified _GVPIAHVG_ 0 0 0 ENSG00000091262|ENST00000205557|ABCC6 ENSG00000091262|ENST00000205557|ABCC6 ENSG00000091262|ENST00000205557|ABCC6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2181701660156 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 47.947 1 45.005 44.505 45.505 -2.9421 0 0 0 0.23711 1 8748 8748 0.0082765 0 1 18205 1808 11897 11901 18237 18237 0.038898788713822796 GVPIVNPYAN 10 Unmodified _GVPIVNPYAN_ 0 0 0 REV__ENST00000492201.5_1_10:14962436-14970058:-|nuORF REV__ENST00000492201.5_1_10:14962436-14970058:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2689819335938 2 522.279649 1042.54475 -0.73404 -0.00038338 0.71962 0.00037584 -0.014424 -7.5332E-06 522.280109348471 107.4 0.79003 102.99 102.58 103.37 -4.4121 52 22 3 0 0 0 0.23583 1 20642 20642 3.5927 0 1 3607100 + 18206 13647 11898 11902 18238 18238 0.025174564432290936 GVPKKQLLKES 11 Unmodified _GVPKKQLLKES_ 0 0 0 REV__ENST00000422788.5_1_3:56595403-56599181:+|nuORF REV__ENST00000422788.5_1_3:56595403-56599181:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 307.26092529296875 4 307.442132 1225.73942 -0.16431 -5.0515E-05 -1.8645 -0.00057324 -2.0289 -0.00062375 307.44147792607026 21.658 0.27514 20.273 20.108 20.383 -1.3847 14 7 2 0 0 0 0.96225 1 3419 3419 0.08335 0.08335 1 288190 + 18207 13300 11899 11903 18239 18239 0.13558207528376442 GVPKKQLLKES 11 Unmodified _GVPKKQLLKES_ 0 0 0 REV__ENST00000422788.5_1_3:56595403-56599181:+|nuORF REV__ENST00000422788.5_1_3:56595403-56599181:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 307.442132 1225.73942 -0.51413 -0.00015807 -1.6084 -0.00049451 -2.1226 -0.00065257 307.4415733533918 19.896 0.41188 19.896 19.758 20.17 0 -0.27131 -0.00015106 NaN 0.08335 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 955940 + 18208 13300 11899 11903 0.13558207528376442 GVPKKQLLKES 11 Unmodified _GVPKKQLLKES_ 0 0 0 REV__ENST00000422788.5_1_3:56595403-56599181:+|nuORF REV__ENST00000422788.5_1_3:56595403-56599181:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 307.442132 1225.73942 -1.3097 -0.00040265 -1.1225 -0.00034511 -2.4322 -0.00074776 307.44173951008423 22.054 0.26905 20.333 20.191 20.46 -1.7211 0.16571 0.0004465 NaN 0.08335 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 283800 + 18209 13300 11899 11903 0.13558207528376442 GVPKQGDNF 9 Unmodified _GVPKQGDNF_ 0 0 0 WNK3|p.I1462Rfs*3|1|0.37|ENSG00000196632|chrX:54237181-54237182|-/TC|frameshift_variant;nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;WNK3|p.N1685Tfs*71|1|0.19|ENSG00000196632|chrX:54202010-54202010|T/-|frameshift_variant;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3 WNK3|p.I1462Rfs*3|1|0.37|ENSG00000196632|chrX:54237181-54237182|-/TC|frameshift_variant WNK3|p.I1462Rfs*3|1|0.37|ENSG00000196632|chrX:54237181-54237182|-/TC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2401428222656 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 146.03 1 140.92 140.42 141.42 -5.1108 0 0 0 0.19656 1 28236 28236 0.073264 0 1 18210 7294 11900 11904 18240 18240 -0.015319761420073519 GVPLIKAPK 9 Unmodified _GVPLIKAPK_ 0 0 0 nc|ENSG00000081019|Q5VWQ0-4|RSBN1;ENSG00000081019|ENST00000261441|RSBN1 nc|ENSG00000081019|Q5VWQ0-4|RSBN1 nc|ENSG00000081019|Q5VWQ0-4|RSBN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.2076721191406 3 308.207656 921.601138 NaN NaN NaN NaN NaN NaN NaN 24.567 1 24.567 24.067 25.067 0 0 0 0 0.23508 1 4237 4237 0.23584 0.23584 1 18211 1623 11901 11905 18241 18241 0.13720129070554776 GVPLIKAPK 9 Unmodified _GVPLIKAPK_ 0 0 0 nc|ENSG00000081019|Q5VWQ0-4|RSBN1;ENSG00000081019|ENST00000261441|RSBN1 nc|ENSG00000081019|Q5VWQ0-4|RSBN1 nc|ENSG00000081019|Q5VWQ0-4|RSBN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.2216491699219 3 308.207656 921.601138 NaN NaN NaN NaN NaN NaN NaN 23.918 1 22.129 21.629 22.629 -1.7886 0 0 0 0.23508 1 3869 3869 0.26902 0.26902 1 18212 1623 11901 11905 18242 18242 0.13720129070554776 GVPLIKKLKL 10 Unmodified _GVPLIKKLKL_ 0 0 0 REV__CCDC160|p.*326L|1|0.52|ENSG00000203952|chrX:134245768-134245769|-/T|frameshift_variant REV__CCDC160|p.*326L|1|0.52|ENSG00000203952|chrX:134245768-134245769|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 555.2860717773438 2 554.894452 1107.77435 0.31484 0.00017471 -4.0447 -0.0022444 -3.7298 -0.0020697 554.8911223495074 146.34 0.1405 146.34 146.25 146.39 0 5 3 2 0 0 0 1.1344 1 29259 29259 0 0 1 576750 + 18213 13286 11902 11906 18243 18243 0.2247749512696373 GVPLPTEPSTP 11 Unmodified _GVPLPTEPSTP_ 0 0 0 PLEKHG6|p.T599Hfs*71|1|0.34|ENSG00000008323|chr12:6327376-6327377|-/A|frameshift_variant PLEKHG6|p.T599Hfs*71|1|0.34|ENSG00000008323|chr12:6327376-6327377|-/A|frameshift_variant PLEKHG6|p.T599Hfs*71|1|0.34|ENSG00000008323|chr12:6327376-6327377|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.790283203125 2 547.790047 1093.56554 0.036167 1.9812E-05 0.86954 0.00047632 0.9057 0.00049613 547.7903173827561 78.944 0.3446 75.268 74.994 75.339 -3.676 13 9 2 0 0 0 0.59903 1 15004 15004 18.146 1.0335 1 631510 18214 12802 11903 11907 18244 18244 0.022500020322468117 GVPLWRWG 8 Unmodified _GVPLWRWG_ 0 0 0 ENST00000397683.5_1_21:47731429-47734889:-|nuORF ENST00000397683.5_1_21:47731429-47734889:-|nuORF ENST00000397683.5_1_21:47731429-47734889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.14361572265625 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 64.42 1 64.42 63.92 64.92 0 0 0 0 0.21486 1 12403 12403 0.45834 0 1 18215 9472 11904 11908 18245 18245 0.0324923206242147 GVPLWRWG 8 Unmodified _GVPLWRWG_ 0 0 0 ENST00000397683.5_1_21:47731429-47734889:-|nuORF ENST00000397683.5_1_21:47731429-47734889:-|nuORF ENST00000397683.5_1_21:47731429-47734889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1708984375 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 71.673 1 68.045 67.545 68.545 -3.6275 0 0 0 0.21486 1 13523 13523 0.45834 0 1 18216 9472 11904 11908 18246 18246 0.0324923206242147 GVPLWRWG 8 Unmodified _GVPLWRWG_ 0 0 0 ENST00000397683.5_1_21:47731429-47734889:-|nuORF ENST00000397683.5_1_21:47731429-47734889:-|nuORF ENST00000397683.5_1_21:47731429-47734889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1374206542969 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 73.921 1 70.245 69.745 70.745 -3.6764 0 0 0 0.21486 1 13979 13979 0.45834 0 1 18217 9472 11904 11908 18247 18247 0.0324923206242147 GVPLWRWG 8 Unmodified _GVPLWRWG_ 0 0 0 ENST00000397683.5_1_21:47731429-47734889:-|nuORF ENST00000397683.5_1_21:47731429-47734889:-|nuORF ENST00000397683.5_1_21:47731429-47734889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1445617675781 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 75.17 1 71.447 70.947 71.947 -3.7227 0 0 0 0.21486 1 14214 14214 0.45834 0 1 18218 9472 11904 11908 18248 18248 0.0324923206242147 GVPLWRWG 8 Unmodified _GVPLWRWG_ 0 0 0 ENST00000397683.5_1_21:47731429-47734889:-|nuORF ENST00000397683.5_1_21:47731429-47734889:-|nuORF ENST00000397683.5_1_21:47731429-47734889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1436767578125 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 83.42 1 79.546 79.046 80.046 -3.8736 0 0 0 0.21486 1 15845 15845 0.45834 0 1 18219 9472 11904 11908 18249 18249 0.0324923206242147 GVPNPPTHK 9 Unmodified _GVPNPPTHK_ 0 0 0 nc|ENSG00000160321|O43345-2|ZNF208 nc|ENSG00000160321|O43345-2|ZNF208 nc|ENSG00000160321|O43345-2|ZNF208 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.17559814453125 3 316.175015 945.503215 NaN NaN NaN NaN NaN NaN NaN 57.258 1 54.069 53.569 54.569 -3.1895 0 0 0 0.23508 1 10629 10629 1.0715 0 1 18220 12406 11905 11909 18250 18250 0.02828320474566226 GVPPIPLV 8 Unmodified _GVPPIPLV_ 0 0 0 REV__ENSG00000120149|ENST00000239243|MSX2 REV__ENSG00000120149|ENST00000239243|MSX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 395.88104248046875 2 396.254914 790.495276 -0.84056 -0.00033308 0.69901 0.00027699 -0.14155 -5.609E-05 396.25513237559636 24.441 0.5499 22.588 22.363 22.913 -1.8534 22 15 2 0 0 0 0.89646 1 3985 3985 0.0082765 0 1 1701300 + 18221 15611 11906 11910 18251 18251 0.09164793225090762 GVPPIPLV 8 Unmodified _GVPPIPLV_ 0 0 0 REV__ENSG00000120149|ENST00000239243|MSX2 REV__ENSG00000120149|ENST00000239243|MSX2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 396.254914 790.495276 -0.039162 -1.5518E-05 0.093034 3.6865E-05 0.053872 2.1347E-05 396.2548752091126 22.672 0.49495 22.672 22.432 22.927 0 0.030835 -0.00015042 NaN 0.0082765 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2647900 + 18222 15611 11906 11910 0.09164793225090762 GVPPIPLV 8 Unmodified _GVPPIPLV_ 0 0 0 REV__ENSG00000120149|ENST00000239243|MSX2 REV__ENSG00000120149|ENST00000239243|MSX2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 396.254914 790.495276 -0.014107 -5.5899E-06 0.030273 1.1996E-05 0.016166 6.4057E-06 396.2548670322611 24.197 0.65856 22.663 22.191 22.85 -1.5342 0.022069 -0.00020016 NaN 0.0082765 29 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2583700 + 18223 15611 11906 11910 0.09164793225090762 GVPPKQNDDLY 11 Unmodified _GVPPKQNDDLY_ 0 0 0 REV__nc|ENSG00000110713|P52948-6|NUP98 REV__nc|ENSG00000110713|P52948-6|NUP98 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.761962890625 2 623.309135 1244.60372 0.39654 0.00024716 1.8955 0.0011815 2.292 0.0014286 623.3096171074108 126.37 0.14899 126.37 126.24 126.39 0 5 3 2 0 0 0 0.88821 1 24925 24925 0.026206 0 1 1476000 + 18224 15212 11907 11911 18252 18252 -0.00880112053096127 GVPPTAERIF 10 Unmodified _GVPPTAERIF_ 0 0 0 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.791015625 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 114.01 1 114.01 113.51 114.51 0 0 0 0 2.8426 1 22422 22422 0.063865 0 1 + 18225 14735 11908 11912 18253 18253 0.04757431851612637 GVPQLQEAL 9 Unmodified _GVPQLQEAL_ 0 0 0 REV__ENST00000565143.1_1_15:72493853-72494174:-|nuORF REV__ENST00000565143.1_1_15:72493853-72494174:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7392883300781 2 477.766374 953.518196 0.57104 0.00027282 -0.52045 -0.00024865 0.050582 2.4167E-05 477.7660931072536 119.94 0.74831 115.3 114.91 115.66 -4.645 46 20 3 0 0 0 0.49624 1 22969 22969 0.40827 0 1 4189700 + 18226 23106 11909 11913 18254 18254 0.0395776755190127 GVPQNSPV 8 Unmodified _GVPQNSPV_ 0 0 0 REV__nc|ENSG00000139908|Q6SA08-3|TSSK4 REV__nc|ENSG00000139908|Q6SA08-3|TSSK4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 399.21246337890625 2 399.211235 796.407917 NaN NaN NaN NaN NaN NaN NaN 71.501 1 68.252 67.752 68.752 -3.2492 0 0 0 0.23366 1 13923 13923 0.12286 0.058877 1 + 18227 16550 11910 11914 18255 18255 0.0015696728352168066 GVPQRCHR 8 Unmodified _GVPQRCHR_ 0 0 0 ENST00000310645.9_1_21:47546143-47549402:+|nuORF ENST00000310645.9_1_21:47546143-47549402:+|nuORF ENST00000310645.9_1_21:47546143-47549402:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.04656982421875 3 318.167977 951.482102 NaN NaN NaN NaN NaN NaN NaN 70.41 1 70.41 69.91 70.91 0 0 0 0 0.21486 1 13639 13639 1.8442 0 1 18228 8642 11911 11915 18256 18256 0.004420318940560719 GVPRHACPEE 10 Unmodified _GVPRHACPEE_ 0 0 0 ENST00000591293.2_1_19:1067404-1080295:+|nuORF ENST00000591293.2_1_19:1067404-1080295:+|nuORF ENST00000591293.2_1_19:1067404-1080295:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7684936523438 2 547.756015 1093.49748 0.5901 0.00032323 -0.28143 -0.00015415 0.30868 0.00016908 547.7558009260897 43.81 0.4501 43.81 43.501 43.951 0 19 12 2 0 0 0 0.67319 1 8187 8187 13.906 0 1 1241800 18229 11618 11912 11916 18257 18257 -0.04553146099442529 GVPRIRQLR 9 Unmodified _GVPRIRQLR_ 0 0 0 nc|ENSG00000118762|Q13563-2|PKD2;PKD2|p.F568Lfs*16|1|0.33|ENSG00000118762|chr4:88052141-88052141|T/-|frameshift_variant;nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2 nc|ENSG00000118762|Q13563-2|PKD2 nc|ENSG00000118762|Q13563-2|PKD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7853393554688 2 547.848899 1093.68324 NaN NaN NaN NaN NaN NaN NaN 58.187 1 54.981 54.481 55.481 -3.2052 0 0 0 0.19624 1 10855 10855 0 0 1 18230 3049 11913 11917 18258 18258 0.1401504420218771 GVPRLKDE 8 Unmodified _GVPRLKDE_ 0 0 0 ENST00000504562.1_1_5:40834313-40834647:-|nuORF ENST00000504562.1_1_5:40834313-40834647:-|nuORF ENST00000504562.1_1_5:40834313-40834647:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.1793518066406 3 305.174903 912.50288 NaN NaN NaN NaN NaN NaN NaN 102.04 1 102.04 101.54 102.54 0 0 0 0 0.21486 1 20038 20038 0.40072 0 1 18231 10657 11914 11918 18259 18259 0.04312900754700877 GVPRLRMEE 9 Unmodified _GVPRLRMEE_ 0 0 0 ENST00000439999.1_1_14:95645696-95646014:+|nuORF ENST00000439999.1_1_14:95645696-95646014:+|nuORF ENST00000439999.1_1_14:95645696-95646014:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7904052734375 2 543.789858 1085.56516 NaN NaN NaN NaN NaN NaN NaN 29.195 1 27.239 26.739 27.739 -1.9561 0 0 0 0.23508 1 5245 5245 11.64 3.7301 1 18232 9880 11915 11919 18260 18260 0.0258030383138248 GVPRLRMEE 9 Unmodified _GVPRLRMEE_ 0 0 0 ENST00000439999.1_1_14:95645696-95646014:+|nuORF ENST00000439999.1_1_14:95645696-95646014:+|nuORF ENST00000439999.1_1_14:95645696-95646014:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7732543945312 2 543.789858 1085.56516 0.33146 0.00018025 0.28841 0.00015683 0.61987 0.00033708 543.7900055810392 29.051 0.24722 27.219 27.04 27.287 -1.8319 9 6 2 0 0 0 0.62102 1 4919 4919 11.64 5.9084 1 299710 18233 9880 11915 11919 18261 18261 0.0258030383138248 GVPRLRRVL 9 Unmodified _GVPRLRRVL_ 0 0 0 ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3;SGSM3|p.T283Rfs*42|1|0.12|ENSG00000100359|chr22:40406111-40406111|C/-|frameshift_variant;ENST00000478085.5_1_22:40800171-40802852:+|nuORF ENSG00000100359|ENST00000248929|SGSM3 ENSG00000100359|ENST00000248929|SGSM3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2623901367188 2 533.353817 1064.69308 NaN NaN NaN NaN NaN NaN NaN 133.52 1 128.65 128.15 129.15 -4.8726 0 0 0 0.23508 1 25655 25655 5.2307 0.90143 1 18234 1964 11916 11920 18262 18262 0.1633223220758282 GVPRLVILF 9 Unmodified _GVPRLVILF_ 0 0 0 REV__ENST00000378308.6_2_X:41003853-41007670:+|nuORF REV__ENST00000378308.6_2_X:41003853-41007670:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.39666748046875 2 507.328945 1012.64334 NaN NaN NaN NaN NaN NaN NaN 143.69 1 139.03 138.53 139.53 -4.656 0 0 0 0.19634 1 28432 28432 0.073264 0 1 + 18235 21112 11917 11921 18263 18263 0.1375210447893096 GVPSSPDCVLL 11 Unmodified _GVPSSPDCVLL_ 0 0 0 REV__ENST00000486040.1_1_7:2274759-2277695:-|nuORF REV__ENST00000486040.1_1_7:2274759-2277695:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7861328125 2 543.778625 1085.5427 NaN NaN NaN NaN NaN NaN NaN 148.12 1 143.41 142.91 143.91 -4.7095 0 0 0 0.22632 1 29408 29408 0.172 0 1 + 18236 22230 11918 11922 18264 18264 0.003346596431129001 GVPTCPGP 8 Unmodified _GVPTCPGP_ 0 0 0 REV__ENST00000248054.9_2_19:16990552-16990696:+|nuORF REV__ENST00000248054.9_2_19:16990552-16990696:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 364.18243408203125 2 364.175807 726.337061 NaN NaN NaN NaN NaN NaN NaN 101.93 1 97.609 97.109 98.109 -4.3208 0 0 0 0.21486 1 19511 19511 2.8892 0 1 + 18237 20101 11919 11923 18265 18265 -0.03705449025642338 GVPTRNKKYLL 11 Unmodified _GVPTRNKKYLL_ 0 0 0 REV__KCNH5|p.W106Gfs*9|1|0.44|ENSG00000140015|chr14:63001448-63001448|A/-|frameshift_variant REV__KCNH5|p.W106Gfs*9|1|0.44|ENSG00000140015|chr14:63001448-63001448|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 644.8919067382812 2 644.890429 1287.76631 NaN NaN NaN NaN NaN NaN NaN 163.63 1 163.63 163.13 164.13 0 0 0 0 0.22632 1 32996 32996 0.11104 0 1 + 18238 23701 11920 11924 18266 18266 0.1339331613955892 GVPVGAPLWAV 11 Unmodified _GVPVGAPLWAV_ 0 0 0 ENSG00000163121|ENST00000451794|NEURL3 ENSG00000163121|ENST00000451794|NEURL3 ENSG00000163121|ENST00000451794|NEURL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2667846679688 2 533.30821 1064.60187 0.10549 5.6261E-05 -0.30495 -0.00016263 -0.19946 -0.00010637 533.30810801093 143.98 1.0301 143.98 143.24 144.27 0 35 29 2 0 0 0 0.71361 1 28615 28615 10.824 2.2306 1 3722000 18239 5403 11921 11925 18267 18267 0.07214923719607214 GVPVKGSRY 9 Unmodified _GVPVKGSRY_ 0 0 0 ENSG00000006047|ENST00000007699|YBX2 ENSG00000006047|ENST00000007699|YBX2 ENSG00000006047|ENST00000007699|YBX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7753601074219 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 169.07 1 164.28 163.78 164.78 -4.7898 0 0 0 0.18966 1 34217 34217 0.40827 0 1 18240 1003 11922 11926 18268 18268 0.05220893508658264 GVPVKGSRY 9 Unmodified _GVPVKGSRY_ 0 0 0 ENSG00000006047|ENST00000007699|YBX2 ENSG00000006047|ENST00000007699|YBX2 ENSG00000006047|ENST00000007699|YBX2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7764892578125 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 142.84 1 137.81 137.31 138.31 -5.0261 0 0 0 0.19638 1 27539 27539 0.40827 0 1 18241 1003 11922 11926 18269 18269 0.05220893508658264 GVPVKGSRY 9 Unmodified _GVPVKGSRY_ 0 0 0 ENSG00000006047|ENST00000007699|YBX2 ENSG00000006047|ENST00000007699|YBX2 ENSG00000006047|ENST00000007699|YBX2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7749328613281 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 138.96 1 134.11 133.61 134.61 -4.8492 0 0 0 0.19679 1 26788 26788 0.073264 0 1 18242 1003 11922 11926 18270 18270 0.05220893508658264 GVPVRGAR 8 Unmodified _GVPVRGAR_ 0 0 0 nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B nc|ENSG00000167645|Q5BJH7-2|YIF1B nc|ENSG00000167645|Q5BJH7-2|YIF1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 407.75250244140625 2 406.248486 810.48242 -0.18377 -7.4654E-05 0.32845 0.00013343 0.14469 5.878E-05 406.24852188359733 142.65 1.304 137.76 137.24 138.54 -4.8982 108 36 4 0 0 0 8448 2 27484 27484;27621 0.0082765 0 1 58405000 18243 5829 11923 11927 18271;18272 18271 0.06959774885558545 GVPWLGLTEL 10 Unmodified _GVPWLGLTEL_ 0 0 0 REV__ENST00000444521.6_1_1:2521013-2521196:+|nuORF REV__ENST00000444521.6_1_1:2521013-2521196:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.1803894042969 3 362.206092 1083.59645 NaN NaN NaN NaN NaN NaN NaN 107.57 1 103.25 102.75 103.75 -4.32 0 0 0 0.22588 1 21188 21188 1.9064 0 1 + 18244 21737 11924 11928 18273 18273 0.05799200137130356 GVPYCIIKG 9 Unmodified _GVPYCIIKG_ 0 0 0 ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000437848.1_1_1:46116879-46117065:-|nuORF;ENST00000446956.1_1_1:146695579-146695888:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF;ENST00000541658.2_1_14:35704472-35704841:-|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF;ENSG00000148303|ENST00000323345|RPL7A ENST00000468834.1_1_10:33346560-33347304:-|nuORF ENST00000468834.1_1_10:33346560-33347304:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1788635253906 3 317.177368 948.510274 NaN NaN NaN NaN NaN NaN NaN 29.154 1 27.261 26.761 27.761 -1.8928 0 0 0 0.23508 1 4949 4949 1.0715 0 1 18245 10174 11925 11929 18274 18274 0.033959170307753084 GVQARDPM 8 Unmodified _GVQARDPM_ 0 0 0 ENST00000409121.6_1_2:114398514-114398574:+|nuORF ENST00000409121.6_1_2:114398514-114398574:+|nuORF ENST00000409121.6_1_2:114398514-114398574:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2152404785156 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 131.3 1 126.53 126.03 127.03 -4.7725 0 0 0 0.21486 1 25278 25278 2.8892 0 1 18246 9559 11926 11930 18275 18275 -0.023875877026057424 GVQFLEPPA 9 Unmodified _GVQFLEPPA_ 0 0 0 ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-3|NEDD9 ENSG00000111859|ENST00000379446|NEDD9 ENSG00000111859|ENST00000379446|NEDD9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73583984375 2 479.255643 956.496732 -0.043148 -2.0679E-05 -0.75756 -0.00036306 -0.80071 -0.00038374 479.25499305435824 86.562 0.20966 82.835 82.765 82.975 -3.727 6 5 2 0 0 0 0.72864 1 16946 16946 16.942 16.942 1 603700 18247 2654 11927 11931 18276 18276 0.01674382523174245 GVQFSSDVSR 10 Unmodified _GVQFSSDVSR_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2664184570312 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 22.554 1 21.101 20.601 21.601 -1.4535 0 0 0 2.8426 1 3601 3601 0.0013812 0 1 18248 4201 11928 11932 18277 18277 -0.017052234301445424 GVQGGGLY 8 Unmodified _GVQGGGLY_ 0 0 0 REV__ENST00000601500.1_1_5:50674257-50674491:-|nuORF REV__ENST00000601500.1_1_5:50674257-50674491:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2122802734375 2 375.692678 749.370804 -0.7327 -0.00027527 -0.44791 -0.00016828 -1.1806 -0.00044354 375.6928854850226 53.253 0.96103 50.158 49.69 50.651 -3.0954 52 27 4 0 0 0 1.0147 1 9808 9808 2.3027 0 1 5224600 + 18249 23419 11929 11933 18278 18278 -0.01390704262246345 GVQGGGRM 8 Unmodified _GVQGGGRM_ 0 0 0 REV__ENST00000567999.5_1_16:90015111-90020668:+|nuORF REV__ENST00000567999.5_1_16:90015111-90020668:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21044921875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 123.87 1 119.3 118.8 119.8 -4.5757 0 0 0 0.23366 1 24422 24422 0.12286 0 1 + 18250 23137 11930 11934 18279 18279 -0.02476126045564797 GVQGGGRM 8 Unmodified _GVQGGGRM_ 0 0 0 REV__ENST00000567999.5_1_16:90015111-90020668:+|nuORF REV__ENST00000567999.5_1_16:90015111-90020668:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21044921875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 123.89 1 119.32 118.82 119.82 -4.5757 0 0 0 0.21486 1 24426 24426 5.7604 0 1 + 18251 23137 11930 11934 18280 18280 -0.02476126045564797 GVQGGGRM 8 Unmodified _GVQGGGRM_ 0 0 0 REV__ENST00000567999.5_1_16:90015111-90020668:+|nuORF REV__ENST00000567999.5_1_16:90015111-90020668:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2101135253906 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 113.57 1 109.04 108.54 109.54 -4.5259 0 0 0 0.23749 1 21804 21804 0.12286 0 1 + 18252 23137 11930 11934 18281 18281 -0.02476126045564797 GVQGGGRM 8 Unmodified _GVQGGGRM_ 0 0 0 REV__ENST00000567999.5_1_16:90015111-90020668:+|nuORF REV__ENST00000567999.5_1_16:90015111-90020668:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2098388671875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 123.56 1 118.83 118.33 119.33 -4.731 0 0 0 0.21486 1 23736 23736 5.7604 0 1 + 18253 23137 11930 11934 18282 18282 -0.02476126045564797 GVQGLRTFF 9 Unmodified _GVQGLRTFF_ 0 0 0 REV__ENST00000493207.1_1_1:2327229-2327331:+|nuORF REV__ENST00000493207.1_1_1:2327229-2327331:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.2274475097656 3 342.190665 1023.55016 NaN NaN NaN NaN NaN NaN NaN 77.235 1 73.576 73.076 74.076 -3.6588 0 0 0 0.23508 1 14702 14702 1.0715 0 1 + 18254 22344 11931 11935 18283 18283 0.03933180025705951 GVQIGSSLIGL 11 Unmodified _GVQIGSSLIGL_ 0 0 0 REV__ENST00000468272.1_1_20:402858-409338:+|nuORF REV__ENST00000468272.1_1_20:402858-409338:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2672729492188 2 522.308406 1042.60226 -0.62543 -0.00032667 0.82247 0.00042958 0.19704 0.00010292 522.3086200061368 136.93 0.73801 132.01 131.74 132.47 -4.9216 37 20 3 0 0 0 0.35468 1 26364 26364 55.503 3.2344 1 2862800 + 18255 21994 11932 11936 18284 18284 0.08266298648823067 GVQIGSSLIGL 11 Unmodified _GVQIGSSLIGL_ 0 0 0 REV__ENST00000468272.1_1_20:402858-409338:+|nuORF REV__ENST00000468272.1_1_20:402858-409338:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2776489257812 2 522.308406 1042.60226 0.28481 0.00014876 -0.79778 -0.00041669 -0.51297 -0.00026793 522.307963273784 136.97 0.69237 132.13 131.79 132.48 -4.84 26 19 2 0 0 0 0.4577 1 26420 26420 40.239 4.1122 1 2369100 + 18256 21994 11932 11936 18285 18285 0.08266298648823067 GVQIMHYN 8 Unmodified _GVQIMHYN_ 0 0 0 nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.V1991I|1|0.15|ENSG00000076555|chr12:109253084-109253084|G/A|missense_variant nc|ENSG00000076555|O00763-3|ACACB nc|ENSG00000076555|O00763-3|ACACB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2318115234375 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 178.71 1 173.92 173.42 174.42 -4.7898 0 0 0 0.21486 1 36562 36562 0.79363 0 1 18257 1540 11933 11937 18286 18286 -0.03307014668519059 GVQIMHYN 8 Unmodified _GVQIMHYN_ 0 0 0 nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.V1991I|1|0.15|ENSG00000076555|chr12:109253084-109253084|G/A|missense_variant nc|ENSG00000076555|O00763-3|ACACB nc|ENSG00000076555|O00763-3|ACACB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2315673828125 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 178.92 1 174.13 173.63 174.63 -4.7898 0 0 0 0.21486 1 36609 36609 0.79363 0 1 18258 1540 11933 11937 18287 18287 -0.03307014668519059 GVQIMHYN 8 Unmodified _GVQIMHYN_ 0 0 0 nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.V1991I|1|0.15|ENSG00000076555|chr12:109253084-109253084|G/A|missense_variant nc|ENSG00000076555|O00763-3|ACACB nc|ENSG00000076555|O00763-3|ACACB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2314758300781 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 179.16 1 174.25 173.75 174.75 -4.9114 0 0 0 0.21486 1 35748 35748 0.79363 0 1 18259 1540 11933 11937 18288 18288 -0.03307014668519059 GVQIMHYN 8 Unmodified _GVQIMHYN_ 0 0 0 nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.V1991I|1|0.15|ENSG00000076555|chr12:109253084-109253084|G/A|missense_variant nc|ENSG00000076555|O00763-3|ACACB nc|ENSG00000076555|O00763-3|ACACB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23150634765625 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 179.61 1 174.7 174.2 175.2 -4.9114 0 0 0 0.21486 1 35840 35840 0.79363 0 1 18260 1540 11933 11937 18289 18289 -0.03307014668519059 GVQIRVPGF 9 Unmodified _GVQIRVPGF_ 0 0 0 ENST00000575277.1_1_16:67976556-67977014:-|nuORF;ENSG00000213398|ENST00000264005|LCAT ENST00000575277.1_1_16:67976556-67977014:-|nuORF ENST00000575277.1_1_16:67976556-67977014:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.8656005859375 3 324.859027 971.55525 NaN NaN NaN NaN NaN NaN NaN 29.335 1 27.442 26.942 27.942 -1.8928 0 0 0 0.19624 1 4986 4986 0.073264 0 1 18261 7694 11934 11938 18290 18290 0.0683348388831746 GVQIVPGVST 10 Unmodified _GVQIVPGVST_ 0 0 0 REV__ENST00000564746.1_1_16:19078986-19083491:+|nuORF REV__ENST00000564746.1_1_16:19078986-19083491:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73138427734375 2 478.7742 955.533846 0.25469 0.00012194 1.4098 0.00067498 1.6645 0.00079692 478.7748361265252 28.199 0.6647 26.444 26 26.665 -1.7552 25 18 2 0 0 0 0.90091 1 4735 4735 10.074 5.3179 1 1324100 + 18262 23096 11935 11939 18291 18291 0.054300540689382615 GVQKIKLLM 9 Unmodified _GVQKIKLLM_ 0 0 0 REV__ENST00000366857.9_1_1:224548243-224563520:+|nuORF REV__ENST00000366857.9_1_1:224548243-224563520:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.9072570800781 3 343.887817 1028.64162 NaN NaN NaN NaN NaN NaN NaN 12.726 1 12.726 12.226 13.226 0 0 0 0 0.23508 1 1793 1793 0.26902 0 1 + 18263 20905 11936 11940 18292 18292 0.12844727398646683 GVQKKRRRRRK 11 Unmodified _GVQKKRRRRRK_ 0 0 0 REV__ENST00000474534.1_1_9:131798902-131809484:+|nuORF REV__ENST00000474534.1_1_9:131798902-131809484:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2649841308594 3 489.990431 1466.94946 NaN NaN NaN NaN NaN NaN NaN 117.22 1 117.22 116.72 117.72 0 0 0 0 0.22632 1 23088 23088 0 0 1 + 18264 16969 11937 11941 18293 18293 0.23466727764548523 GVQKWLKG 8 Unmodified _GVQKWLKG_ 0 0 0 nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2 nc|ENSG00000007202|Q14667-2|BLTP2 nc|ENSG00000007202|Q14667-2|BLTP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2391662597656 2 458.27417 914.533787 NaN NaN NaN NaN NaN NaN NaN 19.264 1 17.629 17.129 18.129 -1.6351 0 0 0 0.21486 1 2896 2896 5.7604 0.52976 1 18265 1017 11938 11942 18294 18294 0.07310098859602476 GVQMNENL 8 Unmodified _GVQMNENL_ 0 0 0 REV__SLC18A2|p.V129M|1|0.47|ENSG00000165646|chr10:117244234-117244234|G/A|missense_variant REV__SLC18A2|p.V129M|1|0.47|ENSG00000165646|chr10:117244234-117244234|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 302.2320861816406 3 302.144615 903.412016 NaN NaN NaN NaN NaN NaN NaN 23.524 1 21.97 21.47 22.47 -1.5532 0 0 0 0.21486 1 4062 4062 0.45834 0 1 + 18266 24626 11939 11943 18295 18295 -0.043553112850759135 GVQMNENL 8 Unmodified _GVQMNENL_ 0 0 0 REV__SLC18A2|p.V129M|1|0.47|ENSG00000165646|chr10:117244234-117244234|G/A|missense_variant REV__SLC18A2|p.V129M|1|0.47|ENSG00000165646|chr10:117244234-117244234|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 302.044677734375 3 302.144615 903.412016 NaN NaN NaN NaN NaN NaN NaN 28.423 1 26.668 26.168 27.168 -1.7552 0 0 0 0.21486 1 4797 4797 0.45834 0 1 + 18267 24626 11939 11943 18296 18296 -0.043553112850759135 GVQMNENL 8 Unmodified _GVQMNENL_ 0 0 0 REV__SLC18A2|p.V129M|1|0.47|ENSG00000165646|chr10:117244234-117244234|G/A|missense_variant REV__SLC18A2|p.V129M|1|0.47|ENSG00000165646|chr10:117244234-117244234|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.0166015625 3 302.144615 903.412016 NaN NaN NaN NaN NaN NaN NaN 60.365 1 57.141 56.641 57.641 -3.2237 0 0 0 0.21486 1 11290 11290 0.45834 0 1 + 18268 24626 11939 11943 18297 18297 -0.043553112850759135 GVQNKMAAT 9 Unmodified _GVQNKMAAT_ 0 0 0 ENST00000469931.2_1_1:153606519-153606709:-|nuORF;ENST00000497086.5_1_1:153606519-153606801:-|nuORF ENST00000469931.2_1_1:153606519-153606709:-|nuORF ENST00000469931.2_1_1:153606519-153606709:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2371826171875 2 460.236927 918.459301 0.25367 0.00011675 -0.026095 -1.201E-05 0.22758 0.00010474 460.23690636442586 30.185 0.46203 30.185 29.884 30.346 0 20 12 2 0 0 0 0.55979 1 5450 5450 15.847 3.6065 1 1843500 18269 10189 11940 11944 18298 18298 -0.0031903201407885717 GVQQKMLDY 9 Unmodified _GVQQKMLDY_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;RYR3|p.N4580Mfs*8|1|0.37|ENSG00000198838|chr15:33853618-33853618|A/-|frameshift_variant;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.E3943Rfs*18|1|0.12|ENSG00000198838|chr15:33837800-33837801|-/A|frameshift_variant nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2711791992188 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 146.37 1 146.37 145.87 146.87 0 0 0 0 0.19691 1 29268 29268 1.2148 0 1 18270 7505 11941 11945 18299 18299 -0.009662071540560646 GVQQKMLDY 9 Unmodified _GVQQKMLDY_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;RYR3|p.N4580Mfs*8|1|0.37|ENSG00000198838|chr15:33853618-33853618|A/-|frameshift_variant;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.E3943Rfs*18|1|0.12|ENSG00000198838|chr15:33837800-33837801|-/A|frameshift_variant nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.269287109375 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 14.575 1 13.461 12.961 13.961 -1.1142 0 0 0 0.23508 1 2193 2193 2.0598 0.21551 1 18271 7505 11941 11945 18300 18300 -0.009662071540560646 GVQQKMLDY 9 Unmodified _GVQQKMLDY_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;RYR3|p.N4580Mfs*8|1|0.37|ENSG00000198838|chr15:33853618-33853618|A/-|frameshift_variant;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.E3943Rfs*18|1|0.12|ENSG00000198838|chr15:33837800-33837801|-/A|frameshift_variant nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27392578125 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 63.793 1 60.796 60.296 61.296 -2.9975 0 0 0 0.19684 1 12332 12332 6.7207 6.3411 1 18272 7505 11941 11945 18301 18301 -0.009662071540560646 GVQQQLELE 9 Unmodified _GVQQQLELE_ 0 0 0 nc|ENSG00000123143|Q16512-2|PKN1;ENSG00000123143|ENST00000242783|PKN1;ENST00000587429.1_1_19:14544333-14557253:+|nuORF;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.P676Rfs*39|1|0.31|ENSG00000123143|chr19:14469390-14469391|-/G|frameshift_variant nc|ENSG00000123143|Q16512-2|PKN1 nc|ENSG00000123143|Q16512-2|PKN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2691040039062 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 66.539 1 63.043 62.543 63.543 -3.4965 0 0 0 0.19679 1 12472 12472 0.073264 0 1 18273 12301 11942 11946 18302 18302 0.009925448553985916 GVQRSLLIHE 10 Unmodified _GVQRSLLIHE_ 0 0 0 REV__tr|U7T4U6|U7T4U6_FUSNUElongationfactorTuOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tufPE=3SV=1 REV__tr|U7T4U6|U7T4U6_FUSNUElongationfactorTuOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tufPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3311157226562 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 66.624 1 66.624 66.124 67.124 0 0 0 0 2.8426 1 12872 12872 0.043787 0 1 + 18274 25394 11943 11947 18303 18303 0.0765590814596635 GVQSAVVLL 9 Unmodified _GVQSAVVLL_ 0 0 0 ENST00000562945.2_1_16:34428410-34428635:-|nuORF ENST00000562945.2_1_16:34428410-34428635:-|nuORF ENST00000562945.2_1_16:34428410-34428635:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 443.2117919921875 2 443.273835 884.533118 NaN NaN NaN NaN NaN NaN NaN 135.48 1 135.48 134.98 135.98 0 0 0 0 0.19634 1 26837 26837 0.073264 0 1 18275 11324 11944 11948 18304 18304 0.08623259419891838 GVQVPSVPIQR 11 Unmodified _GVQVPSVPIQR_ 0 0 0 RPSA|p.Q261R|1|0.3|ENSG00000168028|chr3:39412050-39412050|A/G|missense_variant RPSA|p.Q261R|1|0.3|ENSG00000168028|chr3:39412050-39412050|A/G|missense_variant RPSA|p.Q261R|1|0.3|ENSG00000168028|chr3:39412050-39412050|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.271240234375 2 590.345855 1178.67716 NaN NaN NaN NaN NaN NaN NaN 152.78 1 147.56 147.06 148.06 -5.2209 0 0 0 0.22632 1 29612 29612 0.172 0.14272 1 18276 25625 11945 11949 18305 18305 0.09496481180030969 GVQWMELV 8 Unmodified _GVQWMELV_ 0 0 0 SLC20A2|p.F229Lfs*14|1|0.4|ENSG00000168575|chr8:42444689-42444689|A/-|frameshift_variant;ENSG00000168575|ENST00000520262|SLC20A2 SLC20A2|p.F229Lfs*14|1|0.4|ENSG00000168575|chr8:42444689-42444689|A/-|frameshift_variant SLC20A2|p.F229Lfs*14|1|0.4|ENSG00000168575|chr8:42444689-42444689|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 321.1652526855469 3 321.165239 960.473888 NaN NaN NaN NaN NaN NaN NaN 16.803 1 15.531 15.031 16.031 -1.2722 0 0 0 0.21486 1 2438 2438 0.45834 0 1 18277 5923 11946 11950 18306 18306 -0.007929598659302428 GVRAAPSNCS 10 Unmodified _GVRAAPSNCS_ 0 0 0 REV__ENST00000377022.7_1_1:10765594-10820903:-|nuORF REV__ENST00000377022.7_1_1:10765594-10820903:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25421142578125 2 481.229633 960.444714 NaN NaN NaN NaN NaN NaN NaN 178.86 1 173.95 173.45 174.45 -4.9088 0 0 0 0.22588 1 35683 35683 1.4819 0.68827 1 + 18278 21084 11947 11951 18307 18307 -0.0370910416222614 GVRAAPSNCS 10 Unmodified _GVRAAPSNCS_ 0 0 0 REV__ENST00000377022.7_1_1:10765594-10820903:-|nuORF REV__ENST00000377022.7_1_1:10765594-10820903:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2314758300781 2 481.229633 960.444714 NaN NaN NaN NaN NaN NaN NaN 178.94 1 174.03 173.53 174.53 -4.9088 0 0 0 0.22588 1 35700 35700 1.4819 0.68827 1 + 18279 21084 11947 11951 18308 18308 -0.0370910416222614 GVRAAPSNCS 10 Unmodified _GVRAAPSNCS_ 0 0 0 REV__ENST00000377022.7_1_1:10765594-10820903:-|nuORF REV__ENST00000377022.7_1_1:10765594-10820903:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2535705566406 2 481.229633 960.444714 NaN NaN NaN NaN NaN NaN NaN 179.11 1 174.2 173.7 174.7 -4.9102 0 0 0 0.22588 1 35736 35736 1.4819 0.68827 1 + 18280 21084 11947 11951 18309 18309 -0.0370910416222614 GVRAHRLR 8 Unmodified _GVRAHRLR_ 0 0 0 ENST00000432183.5_1_2:46770253-46803244:+|nuORF ENST00000432183.5_1_2:46770253-46803244:+|nuORF ENST00000432183.5_1_2:46770253-46803244:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 322.2010498046875 3 322.201898 963.583865 NaN NaN NaN NaN NaN NaN NaN 82.4 1 78.702 78.202 79.202 -3.6985 0 0 0 0.21486 1 15715 15715 0.45834 0 1 18281 9794 11948 11952 18310 18310 0.10061646308110994 GVRARRRKP 9 Unmodified _GVRARRRKP_ 0 0 0 REV__nc|ENSG00000122678|Q9NP87-2|POLM REV__nc|ENSG00000122678|Q9NP87-2|POLM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7853393554688 2 548.35214 1094.68973 0.26894 0.00014747 0.07368 4.0402E-05 0.34262 0.00018787 548.8520939478855 132.69 0.10597 127.89 127.83 127.93 -4.799 4 2 2 0 0 0 0.65257 1 25539 25539 0 0 1 760210 + 18282 15698 11949 11953 18311 18311 0.14616982153597746 GVRAVRPKVL 10 Unmodified _GVRAVRPKVL_ 0 0 0 ENSG00000109475|ENST00000394667|RPL34 ENSG00000109475|ENST00000394667|RPL34 ENSG00000109475|ENST00000394667|RPL34 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7727661132812 2 547.861475 1093.7084 0.32915 0.00018033 3.2058 0.0017564 3.535 0.0019367 547.8622886650721 135.76 0.27637 135.76 135.61 135.88 0 9 7 2 0 0 0 1.1333 1 26888 26888 0.0013812 0 1 1901500 18283 2530 11950 11954 18312 18312 0.16529099004787895 GVRCLLPW 8 Unmodified _GVRCLLPW_ 0 0 0 REV__ENST00000360864.8_1_20:62566648-62566831:+|nuORF REV__ENST00000360864.8_1_20:62566648-62566831:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.1780090332031 3 315.177591 942.510943 NaN NaN NaN NaN NaN NaN NaN 23.523 1 22.069 21.569 22.569 -1.4535 0 0 0 0.21486 1 3799 3799 0.45834 0 1 + 18284 20873 11951 11955 18313 18313 0.037387564704886245 GVRCWQDEPN 10 Unmodified _GVRCWQDEPN_ 0 0 0 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2897338867188 2 602.264204 1202.51386 NaN NaN NaN NaN NaN NaN NaN 133.42 1 128.78 128.28 129.28 -4.6399 0 0 0 2.8426 1 26304 26304 0.0013812 0 1 18285 7920 11952 11956 18314 18314 -0.07930064933293579 GVRCWQDEPN 10 Unmodified _GVRCWQDEPN_ 0 0 0 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2954711914062 2 602.264204 1202.51386 NaN NaN NaN NaN NaN NaN NaN 177.36 1 172.49 171.99 172.99 -4.8686 0 0 0 0.22588 1 35294 35294 1.4819 0.51963 1 18286 7920 11952 11956 18315 18315 -0.07930064933293579 GVRDDKAFV 9 Unmodified _GVRDDKAFV_ 0 0 0 REV__ENST00000537971.5_1_12:3392287-3392575:+|nuORF REV__ENST00000537971.5_1_12:3392287-3392575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.14361572265625 3 336.182058 1005.52434 NaN NaN NaN NaN NaN NaN NaN 74.118 1 74.118 73.618 74.618 0 0 0 0 0.23508 1 14385 14385 1.1933 0.735 1 + 18287 22833 11953 11957 18316 18316 0.021802857834131828 GVRFLAPF 8 Unmodified _GVRFLAPF_ 0 0 0 TMEM132A|p.R959Gfs*5|1|0.33|ENSG00000006118|chr11:60936704-60936704|G/-|frameshift_variant;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A;nc|ENSG00000006118|Q24JP5-4|TMEM132A TMEM132A|p.R959Gfs*5|1|0.33|ENSG00000006118|chr11:60936704-60936704|G/-|frameshift_variant TMEM132A|p.R959Gfs*5|1|0.33|ENSG00000006118|chr11:60936704-60936704|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76397705078125 2 453.763438 905.512323 NaN NaN NaN NaN NaN NaN NaN 81.712 1 77.873 77.373 78.373 -3.8392 0 0 0 0.23711 1 15517 15517 0.12286 0.058877 1 18288 1005 11954 11958 18317 18317 0.05578713830891502 GVRGIYTRH 9 Unmodified _GVRGIYTRH_ 0 0 0 REV__LRP2|p.A3344T|1|0.47|ENSG00000081479|chr2:169181587-169181587|C/T|missense_variant REV__LRP2|p.A3344T|1|0.47|ENSG00000081479|chr2:169181587-169181587|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.2416076660156 3 353.533313 1057.57811 -0.63437 -0.00022427 -0.46175 -0.00016324 -1.0961 -0.00038751 353.5331114677111 41.393 1.4026 38.903 38.217 39.62 -2.4896 105 39 4 0 0 0 0.81221 1 7339 7339 1.1933 0 1 15635000 + 18289 23814 11955 11959 18318 18318 0.05162503005772123 GVRGIYTRH 9 Unmodified _GVRGIYTRH_ 0 0 0 REV__LRP2|p.A3344T|1|0.47|ENSG00000081479|chr2:169181587-169181587|C/T|missense_variant REV__LRP2|p.A3344T|1|0.47|ENSG00000081479|chr2:169181587-169181587|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 353.533313 1057.57811 -0.16192 -5.7243E-05 -1.0275 -0.00036327 -1.1895 -0.00042051 353.53290567333863 38.993 1.1133 38.993 38.531 39.644 0 0.098466 -0.0002547 NaN 1.1933 79 31 4 NaN NaN NaN NaN 0 NaN NaN 0 16334000 + 18290 23814 11955 11959 0.05162503005772123 GVRGIYTRH 9 Unmodified _GVRGIYTRH_ 0 0 0 REV__LRP2|p.A3344T|1|0.47|ENSG00000081479|chr2:169181587-169181587|C/T|missense_variant REV__LRP2|p.A3344T|1|0.47|ENSG00000081479|chr2:169181587-169181587|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 353.533313 1057.57811 -0.45593 -0.00016119 -0.67324 -0.00023801 -1.1292 -0.0003992 353.5330290624614 41.542 1.243 38.907 38.396 39.639 -2.6348 0.012389 0.00012107 NaN 1.1933 76 35 3 NaN NaN NaN NaN 0 NaN NaN 0 20225000 + 18291 23814 11955 11959 0.05162503005772123 GVRGIYTRH 9 Unmodified _GVRGIYTRH_ 0 0 0 REV__LRP2|p.A3344T|1|0.47|ENSG00000081479|chr2:169181587-169181587|C/T|missense_variant REV__LRP2|p.A3344T|1|0.47|ENSG00000081479|chr2:169181587-169181587|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 353.533313 1057.57811 -0.043765 -1.5472E-05 -1.0589 -0.00037435 -1.1026 -0.00038982 353.5328897421341 41.426 1.1559 38.775 38.344 39.5 -2.651 -0.11931 -0.00028795 NaN 1.1933 87 32 4 NaN NaN NaN NaN 0 NaN NaN 0 16474000 + 18292 23814 11955 11959 0.05162503005772123 GVRGQHAVEE 10 Unmodified _GVRGQHAVEE_ 0 0 0 ENST00000467370.5_1_3:125824416-125834086:-|nuORF ENST00000467370.5_1_3:125824416-125834086:-|nuORF ENST00000467370.5_1_3:125824416-125834086:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2709350585938 2 541.272887 1080.53122 NaN NaN NaN NaN NaN NaN NaN 156.99 1 151.72 151.22 152.22 -5.2712 0 0 0 2.8426 1 30455 30455 0.01381 0 1 18293 10146 11956 11960 18319 18319 -0.005824013360324898 GVRGVSDSP 9 Unmodified _GVRGVSDSP_ 0 0 0 REV__ENST00000307845.7_1_2:10567007-10567424:+|nuORF REV__ENST00000307845.7_1_2:10567007-10567424:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21575927734375 2 437.224874 872.435195 NaN NaN NaN NaN NaN NaN NaN 102.57 1 98.247 97.747 98.747 -4.3208 0 0 0 0.21848 1 19637 19637 18.135 2.2878 1 + 18294 20456 11957 11961 18320 18320 -0.006125491761054036 GVRGYIEGRWW 11 Unmodified _GVRGYIEGRWW_ 0 0 0 REV__ENSG00000141968|ENST00000602142|VAV1 REV__ENSG00000141968|ENST00000602142|VAV1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2394714355469 3 460.238678 1377.6942 NaN NaN NaN NaN NaN NaN NaN 63.287 1 60.03 59.53 60.53 -3.2567 0 0 0 0.22632 1 11873 11873 1.2503 1.0783 1 + 18295 16654 11958 11962 18321 18321 0.02046401785855778 GVRHARAR 8 Unmodified _GVRHARAR_ 0 0 0 nc|ENSG00000175920|Q18PE1-3|DOK7 nc|ENSG00000175920|Q18PE1-3|DOK7 nc|ENSG00000175920|Q18PE1-3|DOK7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.2220458984375 3 308.186248 921.536915 NaN NaN NaN NaN NaN NaN NaN 78.206 1 74.547 74.047 75.047 -3.6588 0 0 0 0.21486 1 14898 14898 1.6526 0 1 18296 12477 11959 11963 18322 18322 0.0730078675697996 GVRIQHDH 8 Unmodified _GVRIQHDH_ 0 0 0 REV__nc|ENSG00000171723|Q9NQX3|GPHN REV__nc|ENSG00000171723|Q9NQX3|GPHN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.21661376953125 3 321.170264 960.488962 NaN NaN NaN NaN NaN NaN NaN 73.721 1 70.127 69.627 70.627 -3.594 0 0 0 0.21486 1 13995 13995 0.45834 0 1 + 18297 18243 11960 11964 18323 18323 0.00713668046262228 GVRIQTYAKKL 11 Unmodified _GVRIQTYAKKL_ 0 0 0 REV__ALDH7A1|p.A355T|1|0.19|ENSG00000164904|chr5:126555961-126555961|C/T|missense_variant REV__ALDH7A1|p.A355T|1|0.19|ENSG00000164904|chr5:126555961-126555961|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 426.2617492675781 3 426.262712 1275.76631 NaN NaN NaN NaN NaN NaN NaN 152.64 1 147.89 147.39 148.39 -4.7523 0 0 0 0.23698 1 30330 30330 1.3296 0.70282 1 + 18298 13008 11961 11965 18324 18324 0.13945316139529496 GVRKFKAR 8 Unmodified _GVRKFKAR_ 0 0 0 REV__nc|ENSG00000160050|Q9BUN5-3|CCDC28B REV__nc|ENSG00000160050|Q9BUN5-3|CCDC28B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.20587158203125 3 321.206649 960.598118 NaN NaN NaN NaN NaN NaN NaN 16.672 1 15.457 14.957 15.957 -1.2159 0 0 0 0.21486 1 2635 2635 0.45834 0 1 + 18299 17389 11962 11966 18325 18325 0.1162429873641031 GVRKFKAR 8 Unmodified _GVRKFKAR_ 0 0 0 REV__nc|ENSG00000160050|Q9BUN5-3|CCDC28B REV__nc|ENSG00000160050|Q9BUN5-3|CCDC28B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.2216796875 3 321.206649 960.598118 NaN NaN NaN NaN NaN NaN NaN 27.817 1 25.82 25.32 26.32 -1.9962 0 0 0 0.21486 1 4667 4667 0.45834 0 1 + 18300 17389 11962 11966 18326 18326 0.1162429873641031 GVRKLLRW 8 Unmodified _GVRKLLRW_ 0 0 0 ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.1862487792969 3 343.222299 1026.64507 NaN NaN NaN NaN NaN NaN NaN 55.027 1 55.027 54.527 55.527 0 0 0 0 0.21486 1 10496 10496 0.45834 0 1 18301 3888 11963 11967 18327 18327 0.13281158287577455 GVRKLLRWVRR 11 Unmodified _GVRKLLRWVRR_ 0 0 0 ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20965576171875 4 360.486203 1437.9157 -1.1097 -0.00040002 0.14876 5.3626E-05 -0.96092 -0.0003464 360.73701528851785 23.434 0.65231 21.645 21.292 21.944 -1.7886 28 18 2 0 0 0 0.66298 1 3724 3724 0 0 1 5461600 18302 3888 11964 11968 18328 18328 0.21426306272815054 GVRKRHRKD 9 Unmodified _GVRKRHRKD_ 0 0 0 ENST00000487064.1_1_19:33832314-33832719:+|nuORF ENST00000487064.1_1_19:33832314-33832719:+|nuORF ENST00000487064.1_1_19:33832314-33832719:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3287353515625 2 576.347055 1150.67956 NaN NaN NaN NaN NaN NaN NaN 156.17 1 156.17 155.67 156.67 0 0 0 0 0.19624 1 31325 31325 0 0 1 18303 10463 11965 11969 18329 18329 0.11024374428347983 GVRKRHRKD 9 Unmodified _GVRKRHRKD_ 0 0 0 ENST00000487064.1_1_19:33832314-33832719:+|nuORF ENST00000487064.1_1_19:33832314-33832719:+|nuORF ENST00000487064.1_1_19:33832314-33832719:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3179931640625 2 576.347055 1150.67956 NaN NaN NaN NaN NaN NaN NaN 165.04 1 160.25 159.75 160.75 -4.7898 0 0 0 0.19624 1 33023 33023 0 0 1 18304 10463 11965 11969 18330 18330 0.11024374428347983 GVRKRHRKD 9 Unmodified _GVRKRHRKD_ 0 0 0 ENST00000487064.1_1_19:33832314-33832719:+|nuORF ENST00000487064.1_1_19:33832314-33832719:+|nuORF ENST00000487064.1_1_19:33832314-33832719:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3199462890625 2 576.347055 1150.67956 NaN NaN NaN NaN NaN NaN NaN 155.18 1 149.89 149.39 150.39 -5.2854 0 0 0 0.19624 1 30097 30097 0 0 1 18305 10463 11965 11969 18331 18331 0.11024374428347983 GVRKRHRKD 9 Unmodified _GVRKRHRKD_ 0 0 0 ENST00000487064.1_1_19:33832314-33832719:+|nuORF ENST00000487064.1_1_19:33832314-33832719:+|nuORF ENST00000487064.1_1_19:33832314-33832719:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3196411132812 2 576.347055 1150.67956 NaN NaN NaN NaN NaN NaN NaN 160.13 1 154.87 154.37 155.37 -5.2526 0 0 0 0.19624 1 31076 31076 0 0 1 18306 10463 11965 11969 18332 18332 0.11024374428347983 GVRKVFLK 8 Unmodified _GVRKVFLK_ 0 0 0 nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;MYO16|p.A1585Rfs*18|2|0.37|ENSG00000041515|chr13:109141025-109141025|C/-|frameshift_variant nc|ENSG00000041515|Q9Y6X6|MYO16 nc|ENSG00000041515|Q9Y6X6|MYO16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1746826171875 3 316.2114 945.612371 NaN NaN NaN NaN NaN NaN NaN 71.303 1 67.723 67.223 68.223 -3.5798 0 0 0 0.21486 1 13445 13445 0.45834 0 1 18307 1196 11966 11970 18333 18333 0.1373895116470294 GVRKVFLK 8 Unmodified _GVRKVFLK_ 0 0 0 nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;MYO16|p.A1585Rfs*18|2|0.37|ENSG00000041515|chr13:109141025-109141025|C/-|frameshift_variant nc|ENSG00000041515|Q9Y6X6|MYO16 nc|ENSG00000041515|Q9Y6X6|MYO16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1744079589844 3 316.2114 945.612371 NaN NaN NaN NaN NaN NaN NaN 71.663 1 68.036 67.536 68.536 -3.6275 0 0 0 0.21486 1 13520 13520 0.45834 0 1 18308 1196 11966 11970 18334 18334 0.1373895116470294 GVRKVFLK 8 Unmodified _GVRKVFLK_ 0 0 0 nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;MYO16|p.A1585Rfs*18|2|0.37|ENSG00000041515|chr13:109141025-109141025|C/-|frameshift_variant nc|ENSG00000041515|Q9Y6X6|MYO16 nc|ENSG00000041515|Q9Y6X6|MYO16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1749267578125 3 316.2114 945.612371 NaN NaN NaN NaN NaN NaN NaN 78.09 1 74.324 73.824 74.824 -3.7664 0 0 0 0.21486 1 14803 14803 0.45834 0 1 18309 1196 11966 11970 18335 18335 0.1373895116470294 GVRKVFLK 8 Unmodified _GVRKVFLK_ 0 0 0 nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;MYO16|p.A1585Rfs*18|2|0.37|ENSG00000041515|chr13:109141025-109141025|C/-|frameshift_variant nc|ENSG00000041515|Q9Y6X6|MYO16 nc|ENSG00000041515|Q9Y6X6|MYO16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1597595214844 3 316.2114 945.612371 NaN NaN NaN NaN NaN NaN NaN 22.43 1 20.642 20.142 21.142 -1.7886 0 0 0 0.21486 1 3562 3562 0.45834 0 1 18310 1196 11966 11970 18336 18336 0.1373895116470294 GVRKVFLK 8 Unmodified _GVRKVFLK_ 0 0 0 nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;MYO16|p.A1585Rfs*18|2|0.37|ENSG00000041515|chr13:109141025-109141025|C/-|frameshift_variant nc|ENSG00000041515|Q9Y6X6|MYO16 nc|ENSG00000041515|Q9Y6X6|MYO16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1672058105469 3 316.2114 945.612371 NaN NaN NaN NaN NaN NaN NaN 22.547 1 20.758 20.258 21.258 -1.7886 0 0 0 0.21486 1 3586 3586 0.45834 0 1 18311 1196 11966 11970 18337 18337 0.1373895116470294 GVRKVFLK 8 Unmodified _GVRKVFLK_ 0 0 0 nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;MYO16|p.A1585Rfs*18|2|0.37|ENSG00000041515|chr13:109141025-109141025|C/-|frameshift_variant nc|ENSG00000041515|Q9Y6X6|MYO16 nc|ENSG00000041515|Q9Y6X6|MYO16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1974792480469 3 316.2114 945.612371 NaN NaN NaN NaN NaN NaN NaN 44.317 1 41.569 41.069 42.069 -2.7475 0 0 0 0.21486 1 8017 8017 0.45834 0 1 18312 1196 11966 11970 18338 18338 0.1373895116470294 GVRKVFLRL 9 Unmodified _GVRKVFLRL_ 0 0 0 nc|ENSG00000196811|P07510-2|CHRNG;ENSG00000196811|ENST00000651502|CHRNG nc|ENSG00000196811|P07510-2|CHRNG nc|ENSG00000196811|P07510-2|CHRNG MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.2425537109375 3 363.241471 1086.70258 NaN NaN NaN NaN NaN NaN NaN 141.97 1 137.32 136.82 137.82 -4.6493 0 0 0 0.23508 1 28055 28055 0.26902 0.033176 1 18313 7312 11967 11971 18339 18339 0.16270000493113912 GVRLLNEI 8 Unmodified _GVRLLNEI_ 0 0 0 REV__ENSG00000185610|ENST00000332700|DBX2 REV__ENSG00000185610|ENST00000332700|DBX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2384033203125 2 457.276909 912.539266 0.39994 0.00018288 -0.12713 -5.8135E-05 0.2728 0.00012475 457.2768074531654 83.928 0.70177 83.928 83.542 84.243 0 37 19 3 0 0 0 0.73402 1 16376 16376 12.532 0.89125 1 3310600 + 18314 18978 11968 11972 18340 18340 0.07949777651424483 GVRLLNEI 8 Unmodified _GVRLLNEI_ 0 0 0 REV__ENSG00000185610|ENST00000332700|DBX2 REV__ENSG00000185610|ENST00000332700|DBX2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 457.276909 912.539266 0.39994 0.00018288 -0.12713 -5.8135E-05 0.2728 0.00012475 457.2768074531654 83.928 0.70177 83.928 83.542 84.243 0 0.23984 -0.0002185 NaN 12.532 37 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3310600 + 18315 18978 11968 11972 0.07949777651424483 GVRLLNEI 8 Unmodified _GVRLLNEI_ 0 0 0 REV__ENSG00000185610|ENST00000332700|DBX2 REV__ENSG00000185610|ENST00000332700|DBX2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.276909 912.539266 -0.16954 -7.7527E-05 0.51572 0.00023583 0.34618 0.0001583 457.27710938554276 87.268 0.53236 83.541 83.291 83.824 -3.727 -0.14658 0.00036943 NaN 12.532 27 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2895300 + 18316 18978 11968 11972 0.07949777651424483 GVRLLNEI 8 Unmodified _GVRLLNEI_ 0 0 0 REV__ENSG00000185610|ENST00000332700|DBX2 REV__ENSG00000185610|ENST00000332700|DBX2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 457.276909 912.539266 0.27052 0.0001237 0.10246 4.6852E-05 0.37298 0.00017055 457.276883504795 87.654 0.64014 83.658 83.228 83.868 -3.9953 -0.02954 -8.5265E-06 NaN 12.532 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2327200 + 18317 18978 11968 11972 0.07949777651424483 GVRLLNEI 8 Unmodified _GVRLLNEI_ 0 0 0 REV__ENSG00000185610|ENST00000332700|DBX2 REV__ENSG00000185610|ENST00000332700|DBX2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 457.276909 912.539266 0.12837 5.87E-05 0.026449 1.2095E-05 0.15482 7.0795E-05 457.27685917128514 87.353 0.63857 83.624 83.364 84.002 -3.7289 -0.063722 -7.804E-05 NaN 12.532 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2108000 + 18318 18978 11968 11972 0.07949777651424483 GVRLLRLHIAL 11 Unmodified _GVRLLRLHIAL_ 0 0 0 ENST00000368408.3_1_1:155051524-155058895:+|nuORF ENST00000368408.3_1_1:155051524-155058895:+|nuORF ENST00000368408.3_1_1:155051524-155058895:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7669067382812 2 630.916781 1259.81901 NaN NaN NaN NaN NaN NaN NaN 121.74 1 117.05 116.55 117.55 -4.6873 0 0 0 0.22632 1 23372 23372 0.0059557 0 1 18319 9097 11969 11973 18341 18341 0.1994931899303083 GVRLPLLRSL 10 Unmodified _GVRLPLLRSL_ 0 0 0 REV__ENST00000238081.7_1_2:9770567-9771075:-|nuORF REV__ENST00000238081.7_1_2:9770567-9771075:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21099853515625 3 375.248514 1122.72371 NaN NaN NaN NaN NaN NaN NaN 82.538 1 78.665 78.165 79.165 -3.8736 0 0 0 2.8426 1 15685 15685 0.0013812 0 1 + 18320 20083 11970 11974 18342 18342 0.16725965801970233 GVRLRLVRAL 10 Unmodified _GVRLRLVRAL_ 0 0 0 REV__ENST00000332408.8_1_15:49255483-49255573:-|nuORF REV__ENST00000332408.8_1_15:49255483-49255573:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.326171875 2 576.888024 1151.7615 0.28685 0.00016548 -0.39061 -0.00022534 -0.10376 -5.9857E-05 577.3905941140099 116.9 0.20756 116.9 116.81 117.02 0 8 5 2 0 0 0 1.1344 1 23045 23045 0 0 1 2930500 + 18321 20626 11971 11975 18343 18343 0.19168476787444888 GVRLVFLLLAL 11 Unmodified _GVRLVFLLLAL_ 0 0 0 GABRG1|p.T29A|1|0.41|ENSG00000163285|chr4:46123829-46123829|T/C|missense_variant GABRG1|p.T29A|1|0.41|ENSG00000163285|chr4:46123829-46123829|T/C|missense_variant GABRG1|p.T29A|1|0.41|ENSG00000163285|chr4:46123829-46123829|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.31146240234375 3 405.272548 1212.79581 NaN NaN NaN NaN NaN NaN NaN 87.579 1 83.583 83.083 84.083 -3.9953 0 0 0 0.23698 1 16680 16680 0.50596 0.41111 1 18322 11834 11972 11976 18344 18344 0.19792880155728199 GVRLVGVGP 9 Unmodified _GVRLVGVGP_ 0 0 0 nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B;ENST00000477045.1_1_1:2518532-2519982:+|nuORF;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;ENST00000484099.5_1_1:2518532-2520863:+|nuORF;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;ENSG00000157870|ENST00000419916|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;ENST00000481683.5_1_1:2518487-2520915:+|nuORF;nc|ENSG00000157870|Q8TBF2-3|PRXL2B nc|ENSG00000157870|Q8TBF2-2|PRXL2B nc|ENSG00000157870|Q8TBF2-2|PRXL2B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.26617431640625 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 19.96 1 18.563 18.063 19.063 -1.3966 0 0 0 0.23508 1 3313 3313 4.756 1.8668 1 18323 12397 11973 11977 18345 18345 0.08597812342566158 GVRLVGVGP 9 Unmodified _GVRLVGVGP_ 0 0 0 nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B;ENST00000477045.1_1_1:2518532-2519982:+|nuORF;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;ENST00000484099.5_1_1:2518532-2520863:+|nuORF;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;ENSG00000157870|ENST00000419916|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;ENST00000481683.5_1_1:2518487-2520915:+|nuORF;nc|ENSG00000157870|Q8TBF2-3|PRXL2B nc|ENSG00000157870|Q8TBF2-2|PRXL2B nc|ENSG00000157870|Q8TBF2-2|PRXL2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.2913818359375 2 427.266345 852.518136 -0.33356 -0.00014252 0.44005 0.00018802 0.10649 4.5501E-05 427.26637328939415 19.523 0.72968 18.198 18.002 18.731 -1.3251 26 20 2 0 0 0 0.73309 1 2992 2992 4.756 1.8668 1 444290 18324 12397 11973 11977 18346 18346 0.08597812342566158 GVRNKELIGKY 11 Unmodified _GVRNKELIGKY_ 0 0 0 CTNND2|p.D922G|1|0.25|ENSG00000169862|chr5:11082719-11082719|T/C|missense_variant CTNND2|p.D922G|1|0.25|ENSG00000169862|chr5:11082719-11082719|T/C|missense_variant CTNND2|p.D922G|1|0.25|ENSG00000169862|chr5:11082719-11082719|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.29010009765625 3 426.250583 1275.72992 NaN NaN NaN NaN NaN NaN NaN 62.373 1 59.004 58.504 59.504 -3.3694 0 0 0 0.23698 1 11640 11640 2.6312 1.3016 1 18325 748 11974 11978 18347 18347 0.10308439242862732 GVRPFSHSFRP 11 Unmodified _GVRPFSHSFRP_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 643.4800415039062 2 643.841271 1285.66799 0.73304 0.00047196 -0.044538 -2.8675E-05 0.6885 0.00044328 644.344860394712 166.41 0.13467 161.46 161.35 161.48 -4.9484 5 3 2 0 0 0 0.88717 1 32606 32606 0.172 0 1 10971000 + 18326 13904 11975 11979 18348 18348 0.036581326143505066 GVRPGQEW 8 Unmodified _GVRPGQEW_ 0 0 0 nc|ENSG00000116685|Q8IYS2-2|KIAA2013 nc|ENSG00000116685|Q8IYS2-2|KIAA2013 nc|ENSG00000116685|Q8IYS2-2|KIAA2013 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649475097656 3 310.159365 927.456264 NaN NaN NaN NaN NaN NaN NaN 14.295 1 13.084 12.584 13.584 -1.2106 0 0 0 0.2396 1 1883 1883 0 0 1 18327 12294 11976 11980 18349 18349 -0.010365390765855409 GVRPGQEW 8 Unmodified _GVRPGQEW_ 0 0 0 nc|ENSG00000116685|Q8IYS2-2|KIAA2013 nc|ENSG00000116685|Q8IYS2-2|KIAA2013 nc|ENSG00000116685|Q8IYS2-2|KIAA2013 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649475097656 3 310.159365 927.456264 NaN NaN NaN NaN NaN NaN NaN 14.307 1 13.097 12.597 13.597 -1.2106 0 0 0 0.21486 1 1885 1885 0.45834 0 1 18328 12294 11976 11980 18350 18350 -0.010365390765855409 GVRPLRRKL 9 Unmodified _GVRPLRRKL_ 0 0 0 ENST00000320246.9_1_9:127020253-127064229:+|nuORF;ENST00000373600.7_1_9:127020253-127055187:+|nuORF ENST00000320246.9_1_9:127020253-127064229:+|nuORF ENST00000320246.9_1_9:127020253-127064229:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7723388671875 2 547.867092 1093.71963 NaN NaN NaN NaN NaN NaN NaN 102.47 1 98.15 97.65 98.65 -4.3208 0 0 0 0.19624 1 19619 19619 0 0 1 18329 8707 11977 11981 18351 18351 0.17651921098922685 GVRPRLCH 8 Unmodified _GVRPRLCH_ 0 0 0 PDZD3|p.A264Pfs*6|2|0.31|ENSG00000172367|chr11:119187626-119187626|C/-|frameshift_variant;nc|ENSG00000172367|Q86UT5-5|NHERF4;nc|ENSG00000172367|Q86UT5-4|NHERF4;nc|ENSG00000172367|Q86UT5-3|NHERF4;ENSG00000172367|ENST00000355547|NHERF4;nc|ENSG00000172367|Q86UT5|NHERF4 PDZD3|p.A264Pfs*6|2|0.31|ENSG00000172367|chr11:119187626-119187626|C/-|frameshift_variant PDZD3|p.A264Pfs*6|2|0.31|ENSG00000172367|chr11:119187626-119187626|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1761169433594 3 313.176473 936.507589 NaN NaN NaN NaN NaN NaN NaN 29.521 1 27.446 26.946 27.946 -2.0743 0 0 0 0.21486 1 5021 5021 1.6526 0 1 18330 6214 11978 11982 18352 18352 0.03679506416483491 GVRPVLLVP 9 Unmodified _GVRPVLLVP_ 0 0 0 REV__PCDHA5|p.A563V|1|0.54|ENSG00000204965|chr5:140823463-140823463|C/T|missense_variant REV__PCDHA5|p.A563V|1|0.54|ENSG00000204965|chr5:140823463-140823463|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.22406005859375 3 317.211289 948.612037 -0.62047 -0.00019682 0.47391 0.00015033 -0.14656 -4.6489E-05 317.2113529740349 14.635 0.55887 13.462 13.279 13.838 -1.173 38 15 4 0 0 0 0.60489 1 1993 1993 0.20686 0 1 2044700 + 18331 24441 11979 11983 18353 18353 0.1356753144485765 GVRQLLEF 8 Unmodified _GVRQLLEF_ 0 0 0 REV__MAP4K2|p.G667Lfs*24|1|0.38|ENSG00000168067|chr11:64792003-64792004|-/AC|frameshift_variant REV__MAP4K2|p.G667Lfs*24|1|0.38|ENSG00000168067|chr11:64792003-64792004|-/AC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2412109375 2 481.276909 960.539266 NaN NaN NaN NaN NaN NaN NaN 14.505 1 13.295 12.795 13.795 -1.2106 0 0 0 0.21486 1 1927 1927 2.5775 0.27475 1 + 18332 17995 11980 11984 18354 18354 0.05741777651417124 GVRQTQLH 8 Unmodified _GVRQTQLH_ 0 0 0 REV__ENST00000522760.5_1_5:169700986-169724717:-|nuORF REV__ENST00000522760.5_1_5:169700986-169724717:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.9979248046875 3 313.510397 937.509363 -0.57942 -0.00018165 0.41171 0.00012907 -0.16771 -5.2578E-05 313.51049558487193 15.693 0.55408 15.693 15.401 15.955 0 35 15 3 0 0 0 1.0277 1 2373 2373 1.6526 0 1 2437600 + 18333 22661 11981 11985 18355 18355 0.038108387060901805 GVRQTQLH 8 Unmodified _GVRQTQLH_ 0 0 0 REV__ENST00000522760.5_1_5:169700986-169724717:-|nuORF REV__ENST00000522760.5_1_5:169700986-169724717:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 313.510397 937.509363 -0.60431 -0.00018946 0.52455 0.00016445 -0.079767 -2.5008E-05 313.51052224273826 16.853 0.45583 15.638 15.355 15.811 -1.2159 -0.020047 6.522E-05 NaN 1.6526 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1465500 + 18334 22661 11981 11985 0.038108387060901805 GVRQTQLH 8 Unmodified _GVRQTQLH_ 0 0 0 REV__ENST00000522760.5_1_5:169700986-169724717:-|nuORF REV__ENST00000522760.5_1_5:169700986-169724717:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 313.510397 937.509363 -0.47751 -0.0001497 0.43585 0.00013664 -0.041656 -1.306E-05 313.510496674873 16.915 0.41409 15.643 15.351 15.765 -1.2722 -0.01494 -1.8202E-05 NaN 1.6526 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1285100 + 18335 22661 11981 11985 0.038108387060901805 GVRQYFLIQ 9 Unmodified _GVRQYFLIQ_ 0 0 0 REV__ENSG00000173548|ENST00000308527|SNX33 REV__ENSG00000173548|ENST00000308527|SNX33 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.212158203125 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 89.838 1 86.06 85.56 86.56 -3.7779 0 0 0 0.19638 1 17192 17192 0.0033805 0 1 + 18336 18361 11982 11986 18356 18356 0.06217424605551969 GVRRVKSSR 9 Unmodified _GVRRVKSSR_ 0 0 0 REV__ENST00000258526.8_1_12:94699610-94699751:+|nuORF REV__ENST00000258526.8_1_12:94699610-94699751:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 348.86651611328125 3 348.884346 1043.63121 NaN NaN NaN NaN NaN NaN NaN 48.46 1 48.46 47.96 48.96 0 0 0 0 0.23508 1 9152 9152 2.4985 1.5362 1 + 18337 20149 11983 11987 18357 18357 0.11113880788457209 GVRRVRKPL 9 Unmodified _GVRRVRKPL_ 0 0 0 ENST00000327906.7_1_3:52445075-52445192:+|nuORF ENST00000327906.7_1_3:52445075-52445192:+|nuORF ENST00000327906.7_1_3:52445075-52445192:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.9076843261719 3 360.908603 1079.70398 NaN NaN NaN NaN NaN NaN NaN 11.785 1 11.785 11.285 12.285 0 0 0 0 0.23508 1 1592 1592 0.26902 0.1097 1 18338 8749 11984 11988 18358 18358 0.16731634581879007 GVRRVRKPL 9 Unmodified _GVRRVRKPL_ 0 0 0 ENST00000327906.7_1_3:52445075-52445192:+|nuORF ENST00000327906.7_1_3:52445075-52445192:+|nuORF ENST00000327906.7_1_3:52445075-52445192:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2747192382812 2 540.859267 1079.70398 0.29401 0.00015902 -3.4307 -0.0018555 -3.1367 -0.0016965 540.85657049412 133.68 0.1398 133.68 133.59 133.73 0 5 3 2 0 0 0 0.87788 1 26447 26447 0.6015 0.20078 1 1539900 18339 8749 11984 11988 18359 18359 0.16731634581879007 GVRRVVFW 8 Unmodified _GVRRVVFW_ 0 0 0 ENST00000495311.1_1_4:57844993-57845074:+|nuORF ENST00000495311.1_1_4:57844993-57845074:+|nuORF ENST00000495311.1_1_4:57844993-57845074:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 340.42724609375 3 340.203016 1017.58722 NaN NaN NaN NaN NaN NaN NaN 14.15 1 12.977 12.477 13.477 -1.173 0 0 0 0.23837 1 1895 1895 0 0 1 18340 10566 11985 11989 18360 18360 0.07912896362131505 GVRRWVWG 8 Unmodified _GVRRWVWG_ 0 0 0 REV__PTRH1|p.P27Rfs*69|1|0.17|ENSG00000187024|chr9:127715560-127715560|G/-|frameshift_variant REV__PTRH1|p.P27Rfs*69|1|0.17|ENSG00000187024|chr9:127715560-127715560|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.1912536621094 3 339.190999 1014.55117 NaN NaN NaN NaN NaN NaN NaN 74.214 1 74.214 73.714 74.714 0 0 0 0 0.21486 1 14405 14405 0.45834 0 1 + 18341 24533 11986 11990 18361 18361 0.044474391852759254 GVRSEFDQ 8 Unmodified _GVRSEFDQ_ 0 0 0 nc|ENSG00000107902|Q9H008-2|LHPP;ENSG00000107902|ENST00000368842|LHPP nc|ENSG00000107902|Q9H008-2|LHPP nc|ENSG00000107902|Q9H008-2|LHPP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1687316894531 3 313.150646 936.430109 NaN NaN NaN NaN NaN NaN NaN 24.287 1 22.434 21.934 22.934 -1.8534 0 0 0 0.21486 1 3943 3943 1.6526 0 1 18342 2448 11987 11991 18362 18362 -0.040648530387102255 GVRTEYKHP 9 Unmodified _GVRTEYKHP_ 0 0 0 REV__nc|ENSG00000005471|P21439-3|ABCB4 REV__nc|ENSG00000005471|P21439-3|ABCB4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7762451171875 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 151.45 1 146.27 145.77 146.77 -5.1759 0 0 0 0.19711 1 29353 29353 0.029283 0 1 + 18343 13859 11988 11992 18363 18363 0.02243377049035189 GVRVHVVAASA 11 Unmodified _GVRVHVVAASA_ 0 0 0 ENSG00000165685|ENST00000543484|TMEM52B ENSG00000165685|ENST00000543484|TMEM52B ENSG00000165685|ENST00000543484|TMEM52B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27783203125 2 533.311815 1064.60908 0.075564 4.0299E-05 0.072245 3.8529E-05 0.14781 7.8828E-05 533.3118293280178 19.961 0.37615 19.961 19.758 20.134 0 26 10 3 0 0 0 0.69278 1 3311 3311 12.241 0.74595 1 4180600 18344 5651 11989 11993 18364 18364 0.07935656320046292 GVRVKIMI 8 Unmodified _GVRVKIMI_ 0 0 0 REV__ENSG00000168273|ENST00000477703|UQCC5 REV__ENSG00000168273|ENST00000477703|UQCC5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2296142578125 2 458.294048 914.573543 NaN NaN NaN NaN NaN NaN NaN 160.84 1 160.84 160.34 161.34 0 0 0 0 0.23711 1 32296 32296 0.12286 0 1 + 18345 18011 11990 11994 18365 18365 0.11283902538662005 GVRVKPAK 8 Unmodified _GVRVKPAK_ 0 0 0 REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 428.13336181640625 2 427.782162 853.549771 0.49029 0.00020974 -0.49664 -0.00021245 -0.0063443 -2.714E-06 427.781925779427 22.484 0.61703 21.01 20.66 21.277 -1.4742 30 17 2 0 0 0 1.0271 1 3787 3787 0.69038 0 1 908460 + 18346 24953 11991 11995 18366 18366 0.11713805096508167 GVRVKPAK 8 Unmodified _GVRVKPAK_ 0 0 0 REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 427.782162 853.549771 0.10037 4.2934E-05 0.091299 3.9056E-05 0.19166 8.199E-05 427.782097609799 20.873 0.69923 20.873 20.495 21.194 0 -0.031688 -4.7208E-05 NaN 5.2307 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1471900 + 18347 24953 11991 11995 0.11713805096508167 GVRVKPAK 8 Unmodified _GVRVKPAK_ 0 0 0 REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 427.782162 853.549771 -0.15625 -6.6843E-05 0.28744 0.00012296 0.13118 5.6118E-05 427.7822405283211 22.333 0.62593 20.88 20.493 21.119 -1.4535 -0.025197 0.0001206 NaN 5.2307 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 867240 + 18348 24953 11991 11995 0.11713805096508167 GVRVKPAK 8 Unmodified _GVRVKPAK_ 0 0 0 REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 REV__tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 427.782162 853.549771 -0.78893 -0.00033749 0.66432 0.00028418 -0.12461 -5.3306E-05 427.7824086663759 22.645 0.68539 20.857 20.503 21.189 -1.7886 -0.048074 0.00044304 NaN 5.2307 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 676970 + 18349 24953 11991 11995 0.11713805096508167 GVRVQSAHS 9 Unmodified _GVRVQSAHS_ 0 0 0 nc|ENSG00000124215|Q8IXH8-1|CDH26 nc|ENSG00000124215|Q8IXH8-1|CDH26 nc|ENSG00000124215|Q8IXH8-1|CDH26 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1709899902344 3 314.170152 939.488627 NaN NaN NaN NaN NaN NaN NaN 57.724 1 54.473 53.973 54.973 -3.2517 0 0 0 0.23508 1 10721 10721 2.7352 0.82882 1 18350 12302 11992 11996 18367 18367 0.016462483264263028 GVRVRPLLLR 10 Unmodified _GVRVRPLLLR_ 0 0 0 REV__ENST00000566833.1_1_15:43477651-43481519:+|nuORF REV__ENST00000566833.1_1_15:43477651-43481519:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2683715820312 2 589.895849 1177.77715 0.34347 0.00020261 -3.7435 -0.0022083 -3.4 -0.0020057 589.8932544561028 126.62 0.1044 126.62 126.54 126.64 0 4 2 2 0 0 0 1.1344 1 24976 24976 0 0 1 1411800 + 18351 17893 11993 11997 18368 18368 0.19536763304495253 GVRVRVVTD 9 Unmodified _GVRVRVVTD_ 0 0 0 ENSG00000179598|ENST00000321560|PLD6 ENSG00000179598|ENST00000321560|PLD6 ENSG00000179598|ENST00000321560|PLD6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.2033386230469 3 334.201452 999.582528 NaN NaN NaN NaN NaN NaN NaN 102.26 1 98.074 97.574 98.574 -4.1861 0 0 0 0.23508 1 20096 20096 4.897 1.3005 1 18352 6638 11994 11998 18369 18369 0.08271967428709104 GVRVRVVTD 9 Unmodified _GVRVRVVTD_ 0 0 0 ENSG00000179598|ENST00000321560|PLD6 ENSG00000179598|ENST00000321560|PLD6 ENSG00000179598|ENST00000321560|PLD6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.49591064453125 3 334.201452 999.582528 NaN NaN NaN NaN NaN NaN NaN 74.213 1 70.619 70.119 71.119 -3.594 0 0 0 0.23508 1 14093 14093 4.897 2.3985 1 18353 6638 11994 11998 18370 18370 0.08271967428709104 GVRVSYKE 8 Unmodified _GVRVSYKE_ 0 0 0 REV__tr|U7SZX3|U7SZX3_FUSNUnicotinate-nucleotidediphosphorylase(carboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00734PE=3SV=1 REV__tr|U7SZX3|U7SZX3_FUSNUnicotinate-nucleotidediphosphorylase(carboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00734PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.17034912109375 3 313.174903 936.50288 0.14803 4.636E-05 -0.06523 -2.0428E-05 0.082802 2.5932E-05 313.1748399469712 26.44 0.59476 24.805 24.548 25.143 -1.6347 35 16 3 0 0 0 1.0277 1 4426 4426 1.6526 0 1 4124600 + 18354 25258 11995 11999 18371 18371 0.032089007547028814 GVRWCVVH 8 Unmodified _GVRWCVVH_ 0 0 0 ENST00000475135.1_1_3:109046837-109047984:-|nuORF;ENST00000418220.1_1_1:26846030-26846459:-|nuORF;ENSG00000163530|ENST00000478945|DPPA2;ENSG00000121570|ENST00000335658|DPPA4 ENST00000475135.1_1_3:109046837-109047984:-|nuORF ENST00000475135.1_1_3:109046837-109047984:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.1697082519531 3 319.169207 954.48579 NaN NaN NaN NaN NaN NaN NaN 38.642 1 36.237 35.737 36.737 -2.4049 0 0 0 0.21486 1 6881 6881 1.8442 0.6509 1 18355 3182 11996 12000 18372 18372 0.0067270166790649455 GVRWMIGVTEI 11 Unmodified _GVRWMIGVTEI_ 0 0 0 ENSG00000026652|ENST00000320285|AGPAT4;nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 ENSG00000026652|ENST00000320285|AGPAT4 ENSG00000026652|ENST00000320285|AGPAT4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7721557617188 2 630.842091 1259.66963 NaN NaN NaN NaN NaN NaN NaN 131.74 1 126.89 126.39 127.39 -4.8527 0 0 0 0.22632 1 25303 25303 0.026206 0 1 18356 1144 11997 12001 18373 18373 0.05018005588112828 GVRYEFVE 8 Unmodified _GVRYEFVE_ 0 0 0 SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant;ENSG00000144962|ENST00000351008|SPATA16 SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 499.232177734375 2 499.750724 997.486896 -0.16784 -8.3878E-05 -3.0929 -0.0015457 -3.2607 -0.0016296 499.7491797420329 40.503 0.1837 37.963 37.815 37.999 -2.5398 8 4 2 0 0 0 0.89147 1 7256 7256 0.12286 0.079078 1 1264700 18357 4587 11998 12002 18374 18374 -0.011948054821914411 GVSAFSEEAVA 11 Unmodified _GVSAFSEEAVA_ 0 0 0 tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1 tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1 tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2701416015625 2 533.756204 1065.49785 0.40466 0.00021599 -0.39182 -0.00020914 0.01284 6.8537E-06 533.7560727810766 31.485 0.70025 29.254 28.783 29.483 -2.2305 30 19 2 0 0 0 0.76241 1 5705 5705 17.113 0 1 1129600 18358 26500 11999 12003 18375 18375 -0.03227447898552782 GVSAVRLF 8 Unmodified _GVSAVRLF_ 0 0 0 ENST00000606893.5_1_6:110533295-110551331:+|nuORF;ENSG00000168438|ENST00000307731|CDC40 ENST00000606893.5_1_6:110533295-110551331:+|nuORF ENST00000606893.5_1_6:110533295-110551331:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2548522949219 2 424.75307 847.491587 0.3399 0.00014437 -0.064207 -2.7272E-05 0.27569 0.0001171 424.7529518766011 70.508 0.57025 66.928 66.66 67.23 -3.5798 27 15 2 0 0 0 0.71273 1 13324 13324 12.532 0 1 1312400 18359 5908 12000 12004 18376 18376 0.06174123451228297 GVSAYILASV 10 Unmodified _GVSAYILASV_ 0 0 0 REV__ENST00000489048.1_1_2:152547165-152552100:-|nuORF REV__ENST00000489048.1_1_2:152547165-152552100:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2535705566406 2 490.276575 978.538597 0.10829 5.3093E-05 0.52756 0.00025865 0.63585 0.00031174 490.27682959190247 149.81 0.82458 144.69 144.28 145.11 -5.1204 39 22 2 0 0 0 0.51199 1 28952 28952 24.021 3.606 1 2429700 + 18360 22282 12001 12005 18377 18377 0.04846938211710494 GVSCMDSAPDL 11 Unmodified _GVSCMDSAPDL_ 0 0 0 ENSG00000138131|ENST00000260702|LOXL4 ENSG00000138131|ENST00000260702|LOXL4 ENSG00000138131|ENST00000260702|LOXL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7709350585938 2 547.728274 1093.442 NaN NaN NaN NaN NaN NaN NaN 148.93 1 148.93 148.43 149.43 0 0 0 0 0.23324 1 29809 29809 5.7319 0.97584 1 18361 4154 12002 12006 18378 18378 -0.10098740402054318 GVSCSQRWR 9 Unmodified _GVSCSQRWR_ 0 0 0 ZNF384|p.P153Lfs*16|2|0.34|ENSG00000126746|chr12:6678355-6678355|G/-|frameshift_variant;nc|ENSG00000126746|Q8TF68-2|ZNF384;nc|ENSG00000126746|Q8TF68|ZNF384;ENSG00000126746|ENST00000683879|ZNF384 ZNF384|p.P153Lfs*16|2|0.34|ENSG00000126746|chr12:6678355-6678355|G/-|frameshift_variant ZNF384|p.P153Lfs*16|2|0.34|ENSG00000126746|chr12:6678355-6678355|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20068359375 3 360.178542 1077.5138 NaN NaN NaN NaN NaN NaN NaN 44.155 1 41.408 40.908 41.908 -2.7475 0 0 0 0.23508 1 7987 7987 2.4985 0 1 18362 3441 12003 12007 18379 18379 -0.021860201426761705 GVSDSEEEND 10 Unmodified _GVSDSEEEND_ 0 0 0 ENST00000371926.7_1_10:90639907-90640393:+|nuORF ENST00000371926.7_1_10:90639907-90640393:+|nuORF ENST00000371926.7_1_10:90639907-90640393:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2737426757812 2 540.701822 1079.38909 0.16719 9.0398E-05 0.71679 0.00038757 0.88398 0.00047797 541.2033086123596 141.64 0.14265 136.65 136.59 136.74 -4.9877 5 3 2 0 0 0 0.75565 1 27283 27283 3.9444 0.3479 1 2180200 18363 9167 12004 12008 18380 18380 -0.14742703659521794 GVSEKLKQGP 10 Unmodified _GVSEKLKQGP_ 0 0 0 REV__ENSG00000167671|ENST00000301281|UBXN6 REV__ENSG00000167671|ENST00000301281|UBXN6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2630004882812 2 521.798206 1041.58186 -0.88888 -0.00046381 0.59575 0.00031086 -0.29313 -0.00015295 521.7986575207691 12.755 0.10396 11.745 11.66 11.764 -1.0098 4 2 2 0 0 0 0.76269 1 1786 1786 3.5965 3.5965 1 188540 + 18364 17955 12005 12009 18381 18381 0.06273127989015848 GVSELGLVFMK 11 Unmodified _GVSELGLVFMK_ 0 0 0 MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6 MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2649536132812 2 590.325742 1178.63693 NaN NaN NaN NaN NaN NaN NaN 143.94 1 143.94 143.44 144.44 0 0 0 0 0.23018 1 28741 28741 8.1555 0.54658 1 18365 2905 12006 12010 18382 18382 0.05475798465226944 GVSESPSG 8 Unmodified _GVSESPSG_ 0 0 0 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20159912109375 2 360.163951 718.313348 NaN NaN NaN NaN NaN NaN NaN 134.52 1 129.65 129.15 130.15 -4.8726 0 0 0 0.21486 1 25841 25841 2.5775 0 1 18366 4799 12007 12011 18383 18383 -0.05707591258465072 GVSFEKQTEGP 11 Unmodified _GVSFEKQTEGP_ 0 0 0 REV__nc|ENSG00000100678|P57103-3|SLC8A3 REV__nc|ENSG00000100678|P57103-3|SLC8A3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2912902832031 3 393.527782 1177.56152 -0.018874 -7.4275E-06 -0.3527 -0.0001388 -0.37158 -0.00014623 393.52764432476744 28.209 0.89413 28.209 27.597 28.491 0 31 25 2 0 0 0 0.96084 1 4874 4874 1.3296 0.92138 1 598180 + 18367 14734 12008 12012 18384 18384 -0.02016087461470306 GVSFEKQTEGP 11 Unmodified _GVSFEKQTEGP_ 0 0 0 REV__nc|ENSG00000100678|P57103-3|SLC8A3 REV__nc|ENSG00000100678|P57103-3|SLC8A3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 393.527782 1177.56152 0.25366 9.9823E-05 -0.81016 -0.00031882 -0.5565 -0.000219 393.5274553207 30.378 0.56431 28.261 28.119 28.683 -2.1167 -0.0078912 -0.00018952 NaN 1.3296 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 494590 + 18368 14734 12008 12012 -0.02016087461470306 GVSFEKQTEGP 11 Unmodified _GVSFEKQTEGP_ 0 0 0 REV__nc|ENSG00000100678|P57103-3|SLC8A3 REV__nc|ENSG00000100678|P57103-3|SLC8A3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 393.527782 1177.56152 0.32746 0.00012887 -1.1221 -0.00044159 -0.79466 -0.00031272 393.52734903988284 30.202 0.70015 28.309 27.785 28.485 -1.8928 0.040081 -0.00055782 NaN 1.3296 26 19 2 NaN NaN NaN NaN 0 NaN NaN 0 564970 + 18369 14734 12008 12012 -0.02016087461470306 GVSFEKQTEGP 11 Unmodified _GVSFEKQTEGP_ 0 0 0 REV__nc|ENSG00000100678|P57103-3|SLC8A3 REV__nc|ENSG00000100678|P57103-3|SLC8A3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 393.527782 1177.56152 -0.050452 -1.9854E-05 -0.44982 -0.00017702 -0.50027 -0.00019687 393.52760524448723 30.371 1.0864 28.296 27.519 28.605 -2.0743 0.027499 0.00023589 NaN 1.3296 37 30 2 NaN NaN NaN NaN 0 NaN NaN 0 887040 + 18370 14734 12008 12012 -0.02016087461470306 GVSFFVLSLI 10 Unmodified _GVSFFVLSLI_ 0 0 0 ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2 ENST00000472488.5_1_1:160085570-160106822:+|nuORF ENST00000472488.5_1_1:160085570-160106822:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2777709960938 2 541.318243 1080.62193 NaN NaN NaN NaN NaN NaN NaN 156.99 1 151.71 151.21 152.21 -5.2854 0 0 0 0.22588 1 30461 30461 10.824 0.024421 1 18371 1118 12009 12013 18385 18385 0.0848467465957583 GVSFHSHL 8 Unmodified _GVSFHSHL_ 0 0 0 ZNF160|p.H236Lfs*66|1|0.05|ENSG00000170949|chr19:53069827-53069828|-/CA|frameshift_variant;ZNF160|p.K668Rfs*53|1|0.04|ENSG00000170949|chr19:53068531-53068531|T/-|frameshift_variant;ZNF160|p.P732Tfs*5|1|0.23|ENSG00000170949|chr19:53068340-53068341|-/T|frameshift_variant;ENSG00000170949|ENST00000683776|ZNF160 ZNF160|p.H236Lfs*66|1|0.05|ENSG00000170949|chr19:53069827-53069828|-/CA|frameshift_variant ZNF160|p.H236Lfs*66|1|0.05|ENSG00000170949|chr19:53069827-53069828|-/CA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 442.2431945800781 2 442.224677 882.434801 NaN NaN NaN NaN NaN NaN NaN 118.76 1 118.76 118.26 119.26 0 0 0 0 0.21486 1 23393 23393 10.183 3.8293 1 18372 6115 12010 12014 18386 18386 -0.011119241052938378 GVSFMERFA 9 Unmodified _GVSFMERFA_ 0 0 0 REV__nc|ENSG00000120925|Q96K19-4|RNF170 REV__nc|ENSG00000120925|Q96K19-4|RNF170 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2680053710938 2 522.252577 1042.4906 NaN NaN NaN NaN NaN NaN NaN 140.88 1 140.88 140.38 141.38 0 0 0 0 0.22621 1 28057 28057 15.847 6.4641 1 + 18373 15639 12011 12015 18387 18387 -0.028944589799721143 GVSFMERFA 9 Unmodified _GVSFMERFA_ 0 0 0 REV__nc|ENSG00000120925|Q96K19-4|RNF170 REV__nc|ENSG00000120925|Q96K19-4|RNF170 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2654418945312 2 522.252577 1042.4906 NaN NaN NaN NaN NaN NaN NaN 144.62 1 144.62 144.12 145.12 0 0 0 0 0.23508 1 28897 28897 11.64 0 1 + 18374 15639 12011 12015 18388 18388 -0.028944589799721143 GVSFMERFA 9 Unmodified _GVSFMERFA_ 0 0 0 REV__nc|ENSG00000120925|Q96K19-4|RNF170 REV__nc|ENSG00000120925|Q96K19-4|RNF170 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.282470703125 2 522.252577 1042.4906 NaN NaN NaN NaN NaN NaN NaN 146.44 1 141.76 141.26 142.26 -4.6868 0 0 0 0.22621 1 29044 29044 15.847 1.0089 1 + 18375 15639 12011 12015 18389 18389 -0.028944589799721143 GVSGCGSG 8 Unmodified _GVSGCGSG_ 0 0 0 REV__ENST00000442998.6_1_6:33541307-33541814:-|nuORF REV__ENST00000442998.6_1_6:33541307-33541814:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.759033203125 1 623.245351 622.238075 1.0333 0.00064397 -4.3217 -0.0026935 -3.2885 -0.0020495 623.2478143570163 144.12 0.17088 139.45 139.33 139.5 -4.6694 5 4 2 0 0 0 1.0249 1 28522 28522 2.5775 0.27475 1 1498700 + 18376 21726 12012 12016 18390 18390 -0.08815471990544665 GVSGCGSG 8 Unmodified _GVSGCGSG_ 0 0 0 REV__ENST00000442998.6_1_6:33541307-33541814:-|nuORF REV__ENST00000442998.6_1_6:33541307-33541814:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7529296875 1 623.245351 622.238075 1.0769 0.00067116 -4.3735 -0.0027258 -3.2966 -0.0020546 623.2429824205695 150.43 0.14024 145.7 145.61 145.75 -4.7323 5 3 2 0 0 0 1.0249 1 29877 29877 5.7604 0.52976 1 1790100 + 18377 21726 12012 12016 18391 18391 -0.08815471990544665 GVSGCGSG 8 Unmodified _GVSGCGSG_ 0 0 0 REV__ENST00000442998.6_1_6:33541307-33541814:-|nuORF REV__ENST00000442998.6_1_6:33541307-33541814:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7738037109375 1 623.245351 622.238075 0.63549 0.00039607 1.0679 0.00066556 1.7034 0.0010616 623.2435675605697 158.88 0.18207 153.61 153.51 153.69 -5.2712 6 4 2 0 0 0 1.0271 1 30839 30839 2.5775 1.976 1 812440 + 18378 21726 12012 12016 18392 18392 -0.08815471990544665 GVSGDCDG 8 Unmodified _GVSGDCDG_ 0 0 0 ENST00000590901.5_1_18:47813309-47813435:-|nuORF ENST00000590901.5_1_18:47813309-47813435:-|nuORF ENST00000590901.5_1_18:47813309-47813435:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 709.2557983398438 1 709.245745 708.238469 0.9793 0.00069456 -0.063853 -4.5287E-05 0.91544 0.00064927 709.2508900000104 169.71 0.17969 164.92 164.79 164.97 -4.7898 5 4 2 0 0 0 1.0249 1 34387 34387 2.5775 2.5775 1 5526300 18379 11606 12013 12017 18393 18393 -0.12732097061348213 GVSGDYQTY 9 Unmodified _GVSGDYQTY_ 0 0 0 tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1 tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1 tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 496.2498474121094 2 495.214172 988.413791 0.4643 0.00022993 1.7375 0.00086042 2.2018 0.0010903 495.2160407133146 109.32 0.67039 105.14 104.8 105.47 -4.1826 57 18 5 0 0 0 0.30056 1 21057 21057 4.7159 2.9736 1 4090100 18380 26401 12014 12018 18394 18394 -0.08087978995479261 GVSGDYQTY 9 Unmodified _GVSGDYQTY_ 0 0 0 tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1 tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1 tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 495.214172 988.413791 0.48088 0.00023814 3.0819 0.0015262 3.5627 0.0017643 495.2161400188959 105.02 0.80042 105.02 104.62 105.42 0 -0.06382 0.00048496 NaN 4.7159 45 22 3 NaN NaN NaN NaN 0 NaN NaN 0 2956300 18381 26401 12014 12018 -0.08087978995479261 GVSGDYQTY 9 Unmodified _GVSGDYQTY_ 0 0 0 tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1 tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1 tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 495.214172 988.413791 -0.38388 -0.0001901 2.2288 0.0011037 1.8449 0.00091362 495.21645914653317 109.43 0.8718 105.05 104.64 105.52 -4.3776 -0.030835 -0.00035997 NaN 4.7159 64 24 4 NaN NaN NaN NaN 0 NaN NaN 0 3763700 18382 26401 12014 12018 -0.08087978995479261 GVSGDYQTY 9 Unmodified _GVSGDYQTY_ 0 0 0 tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1 tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1 tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 495.214172 988.413791 -0.23288 -0.00011533 3.3552 0.0016615 3.1223 0.0015462 495.21651709762153 109.58 0.8087 105.13 104.78 105.59 -4.4518 0.041213 0.00075569 NaN 4.7159 64 22 5 NaN NaN NaN NaN 0 NaN NaN 0 5783700 18383 26401 12014 12018 -0.08087978995479261 GVSGFFHNGY 10 Unmodified _GVSGFFHNGY_ 0 0 0 ENST00000425988.1_1_13:23411483-23411888:-|nuORF ENST00000425988.1_1_13:23411483-23411888:-|nuORF ENST00000425988.1_1_13:23411483-23411888:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7801513671875 2 542.745973 1083.47739 -0.25962 -0.00014091 -0.19354 -0.00010504 -0.45316 -0.00024595 542.7458798593697 19.991 0.3138 18.666 18.487 18.801 -1.3251 19 8 3 0 0 0 0.73842 1 3065 3065 7.2892 1.5288 1 2222700 18384 9720 12015 12019 18395 18395 -0.06100573767707829 GVSGGKLP 8 Unmodified _GVSGGKLP_ 0 0 0 ENST00000397389.6_1_12:123459581-123461448:+|nuORF ENST00000397389.6_1_12:123459581-123461448:+|nuORF ENST00000397389.6_1_12:123459581-123461448:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55328369140625 2 357.710871 713.407189 -0.31176 -0.00011152 -0.34158 -0.00012219 -0.65334 -0.00023371 357.7106745747124 59.27 0.73284 56.36 56.11 56.843 -2.9105 33 20 2 0 0 0 8448 1 11398 11398 0.0082765 0 1 867920 18385 9464 12016 12020 18396 18396 0.0390217263446857 GVSGGKLP 8 Unmodified _GVSGGKLP_ 0 0 0 ENST00000397389.6_1_12:123459581-123461448:+|nuORF ENST00000397389.6_1_12:123459581-123461448:+|nuORF ENST00000397389.6_1_12:123459581-123461448:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5534973144531 2 357.710871 713.407189 NaN NaN NaN NaN NaN NaN NaN 59.52 1 56.297 55.797 56.797 -3.2237 0 0 0 0.21486 1 11119 11119 12.532 3.9383 1 18386 9464 12016 12020 18397 18397 0.0390217263446857 GVSGGYKKARE 11 Unmodified _GVSGGYKKARE_ 0 0 0 REV__ENSG00000162191|ENST00000301935|UBXN1 REV__ENSG00000162191|ENST00000301935|UBXN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.31494140625 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 144.38 1 139.71 139.21 140.21 -4.6694 0 0 0 0.23018 1 28586 28586 8.1555 0.24537 1 + 18387 17483 12017 12021 18398 18398 0.04019031249231375 GVSGPCLG 8 Unmodified _GVSGPCLG_ 0 0 0 MAPT|p.A393Pfs*12|1|0.16|ENSG00000186868|chr17:45987084-45987084|A/-|frameshift_variant;MAPT|p.G621Qfs*10|1|0.1|ENSG00000186868|chr17:46010397-46010398|GG/-|frameshift_variant;ENSG00000186868|ENST00000262410|MAPT MAPT|p.A393Pfs*12|1|0.16|ENSG00000186868|chr17:45987084-45987084|A/-|frameshift_variant MAPT|p.A393Pfs*12|1|0.16|ENSG00000186868|chr17:45987084-45987084|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.1200866699219 2 345.167982 688.32141 NaN NaN NaN NaN NaN NaN NaN 106.76 1 106.76 106.26 107.26 0 0 0 0 0.21486 1 20989 20989 5.7604 0 1 18388 7079 12018 12022 18399 18399 -0.035217355426880204 GVSGPLRLY 9 Unmodified _GVSGPLRLY_ 0 0 0 ENST00000399083.1_1_17:19061550-19062206:-|nuORF ENST00000399083.1_1_17:19061550-19062206:-|nuORF ENST00000399083.1_1_17:19061550-19062206:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2386474609375 2 481.276909 960.539266 0.053569 2.5782E-05 0.26918 0.00012955 0.32275 0.00015533 481.27704957077964 115.42 0.6496 110.95 110.6 111.25 -4.4726 34 18 2 0 0 0 0.32442 1 22708 22708 1.2148 1.1508 1 3868200 18389 9492 12019 12023 18400 18400 0.05741777651405755 GVSGRIRW 8 Unmodified _GVSGRIRW_ 0 0 0 ENST00000537064.5_1_12:133257767-133263855:-|nuORF ENST00000537064.5_1_12:133257767-133263855:-|nuORF ENST00000537064.5_1_12:133257767-133263855:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2208251953125 3 310.847121 929.519533 -0.53046 -0.00016489 -0.56074 -0.0001743 -1.0912 -0.0003392 310.8468416304685 19.019 0.51802 19.019 18.548 19.066 0 27 14 3 0 0 0 0.88811 1 3091 3091 0.45834 0 1 523590 18390 11032 12020 12024 18401 18401 0.05195446431309847 GVSGRIRW 8 Unmodified _GVSGRIRW_ 0 0 0 ENST00000537064.5_1_12:133257767-133263855:-|nuORF ENST00000537064.5_1_12:133257767-133263855:-|nuORF ENST00000537064.5_1_12:133257767-133263855:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 310.847121 929.519533 -0.0090488 -2.8128E-06 -1.4757 -0.00045872 -1.4848 -0.00046154 310.84666444753924 20.243 0.56091 18.846 18.619 19.18 -1.3966 -0.086235 -0.00042578 NaN 0.45834 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 399390 18391 11032 12020 12024 0.05195446431309847 GVSGTDGE 8 Unmodified _GVSGTDGE_ 0 0 0 ENST00000560804.6_3_19:42595706-42595865:-|nuORF ENST00000560804.6_3_19:42595706-42595865:-|nuORF ENST00000560804.6_3_19:42595706-42595865:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1529235839844 2 361.153583 720.292613 NaN NaN NaN NaN NaN NaN NaN 125.76 1 121.16 120.66 121.66 -4.5984 0 0 0 0.21486 1 24794 24794 2.5775 0 1 18392 11293 12021 12025 18402 18402 -0.07872181638140319 GVSGWQRGDQN 11 Unmodified _GVSGWQRGDQN_ 0 0 0 ENST00000359692.10_3_19:10941737-10941998:+|nuORF ENST00000359692.10_3_19:10941737-10941998:+|nuORF ENST00000359692.10_3_19:10941737-10941998:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.280517578125 2 602.2787 1202.54285 NaN NaN NaN NaN NaN NaN NaN 167.29 1 167.29 166.79 167.79 0 0 0 0 0.23151 1 34176 34176 7.1017 0.89594 1 18393 9006 12022 12026 18403 18403 -0.05032204312669819 GVSHCSLSRP 10 Unmodified _GVSHCSLSRP_ 0 0 0 REV__NYAP1|p.P182Qfs*21|1|0.1|ENSG00000166924|chr7:100488261-100488261|C/-|frameshift_variant REV__NYAP1|p.P182Qfs*21|1|0.1|ENSG00000166924|chr7:100488261-100488261|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.260009765625 2 521.758558 1041.50256 -0.61987 -0.00032342 2.0316 0.00106 1.4118 0.0007366 522.2624176373766 145.88 0.17168 140.77 140.69 140.86 -5.1108 5 4 2 0 0 0 0.74842 1 28186 28186 6.2058 0 1 4075000 + 18394 17890 12023 12027 18404 18404 -0.016528422367855455 GVSHFEWTQL 10 Unmodified _GVSHFEWTQL_ 0 0 0 nc|ENSG00000164325|Q8WUU8-2|TMEM174;ENSG00000164325|ENST00000296776|TMEM174 nc|ENSG00000164325|Q8WUU8-2|TMEM174 nc|ENSG00000164325|Q8WUU8-2|TMEM174 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2914428710938 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 106.49 1 102.4 101.9 102.9 -4.0913 0 0 0 2.8426 1 20477 20477 0.13989 0.13851 1 18395 5533 12024 12028 18405 18405 -0.021160600163966592 GVSHIIASVRC 11 Unmodified _GVSHIIASVRC_ 0 0 0 REV__ENST00000436137.2_1_11:124530361-124543691:-|nuORF REV__ENST00000436137.2_1_11:124530361-124543691:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2099914550781 3 381.209731 1140.60736 NaN NaN NaN NaN NaN NaN NaN 110.46 1 110.46 109.96 110.96 0 0 0 0 0.22632 1 21726 21726 0.00056442 0 1 + 18396 21667 12025 12029 18406 18406 0.0426827923977271 GVSHIIASVRC 11 Unmodified _GVSHIIASVRC_ 0 0 0 REV__ENST00000436137.2_1_11:124530361-124543691:-|nuORF REV__ENST00000436137.2_1_11:124530361-124543691:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2109375 3 381.209731 1140.60736 NaN NaN NaN NaN NaN NaN NaN 171.5 1 171.5 171 172 0 0 0 0 0.23689 1 35335 35335 2.8433 0.3448 1 + 18397 21667 12025 12029 18407 18407 0.0426827923977271 GVSHIIASVRC 11 Unmodified _GVSHIIASVRC_ 0 0 0 REV__ENST00000436137.2_1_11:124530361-124543691:-|nuORF REV__ENST00000436137.2_1_11:124530361-124543691:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2098388671875 3 381.209731 1140.60736 NaN NaN NaN NaN NaN NaN NaN 143.06 1 138.4 137.9 138.9 -4.656 0 0 0 0.22632 1 28284 28284 0.00056442 0 1 + 18398 21667 12025 12029 18408 18408 0.0426827923977271 GVSHLHPEL 9 Unmodified _GVSHLHPEL_ 0 0 0 ENSG00000198173|ENST00000358047|FAM47C ENSG00000198173|ENST00000358047|FAM47C ENSG00000198173|ENST00000358047|FAM47C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 494.73626708984375 2 494.764166 987.513779 NaN NaN NaN NaN NaN NaN NaN 154.48 1 149.22 148.72 149.72 -5.2526 0 0 0 0.19652 1 29953 29953 0.073264 0 1 18399 7435 12026 12030 18409 18409 0.019523031289850223 GVSHMRLLVE 10 Unmodified _GVSHMRLLVE_ 0 0 0 REV__nc|ENSG00000140263|Q00796-2|SORD REV__nc|ENSG00000140263|Q00796-2|SORD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2119140625 3 380.877981 1139.61211 -0.28986 -0.0001104 0.0045304 1.7255E-06 -0.28533 -0.00010868 380.8780462734941 87.004 0.84106 83.277 82.872 83.713 -3.727 67 23 4 0 0 0 0.52172 1 16950 16950 0.043787 0.037832 1 8382800 + 18400 16563 12027 12031 18410 18410 0.04789163382542938 GVSHVFEYIRS 11 Unmodified _GVSHVFEYIRS_ 0 0 0 nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1 nc|ENSG00000148484|Q15404-2|RSU1 nc|ENSG00000148484|Q15404-2|RSU1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.8916015625 3 431.891055 1292.65134 NaN NaN NaN NaN NaN NaN NaN 161.56 1 156.77 156.27 157.27 -4.7898 0 0 0 0.23698 1 32133 32133 0.50596 0 1 18401 4747 12028 12032 18411 18411 0.016715869377549097 GVSILAVYSKD 11 Unmodified _GVSILAVYSKD_ 0 0 0 ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;nc|ENSG00000152782|Q8TE04-3|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1;ENST00000461829.1_1_10:91359007-91371632:-|nuORF;nc|ENSG00000125779|Q9BZ23-2|PANK2;nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2 ENSG00000152782|ENST00000307534|PANK1 ENSG00000152782|ENST00000307534|PANK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3353271484375 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 134.21 1 134.21 133.71 134.71 0 0 0 0 0.224 1 26563 26563 13.042 2.243 1 18402 4941 12029 12033 18412 18412 0.054102639576512956 GVSIWRREEE 10 Unmodified _GVSIWRREEE_ 0 0 0 REV__ENST00000311806.7_1_3:38295880-38295949:+|nuORF REV__ENST00000311806.7_1_3:38295880-38295949:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7567138671875 2 630.820201 1259.62585 NaN NaN NaN NaN NaN NaN NaN 147.05 1 147.05 146.55 147.55 0 0 0 0 0.22588 1 29413 29413 10.824 0.67336 1 + 18403 20493 12030 12034 18413 18413 0.006421124153348501 GVSKKGGS 8 Unmodified _GVSKKGGS_ 0 0 0 ENST00000240185.7_1_1:11083899-11083992:+|nuORF ENST00000240185.7_1_1:11083899-11083992:+|nuORF ENST00000240185.7_1_1:11083899-11083992:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2063903808594 2 360.205953 718.397353 NaN NaN NaN NaN NaN NaN NaN 32.354 1 32.354 31.854 32.854 0 0 0 0 0.23749 1 5875 5875 0.12286 0 1 18404 8183 12031 12035 18414 18414 0.02688984629105562 GVSKKGGS 8 Unmodified _GVSKKGGS_ 0 0 0 ENST00000240185.7_1_1:11083899-11083992:+|nuORF ENST00000240185.7_1_1:11083899-11083992:+|nuORF ENST00000240185.7_1_1:11083899-11083992:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.206787109375 2 360.205953 718.397353 NaN NaN NaN NaN NaN NaN NaN 113.35 1 113.35 112.85 113.85 0 0 0 0 0.21486 1 22288 22288 0.79363 0 1 18405 8183 12031 12035 18415 18415 0.02688984629105562 GVSKLHRVFH 10 Unmodified _GVSKLHRVFH_ 0 0 0 nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;ENST00000604566.1_1_1:3644156-3648116:+|nuORF nc|ENSG00000078900|O15350-10|TP73 nc|ENSG00000078900|O15350-10|TP73 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.26025390625 2 590.340907 1178.66726 NaN NaN NaN NaN NaN NaN NaN 101.71 1 97.526 97.026 98.026 -4.1822 0 0 0 0.22588 1 19984 19984 6.7232 0.51738 1 18406 12237 12032 12036 18416 18416 0.0850733796530676 GVSKPIVK 8 Unmodified _GVSKPIVK_ 0 0 0 ENST00000495714.1_1_7:36447357-36456706:+|nuORF;nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN ENST00000495714.1_1_7:36447357-36456706:+|nuORF ENST00000495714.1_1_7:36447357-36456706:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 414.2623596191406 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 27.402 1 25.646 25.146 26.146 -1.7552 0 0 0 0.21486 1 4584 4584 9.3474 0.75416 1 18407 1078 12033 12037 18417 18417 0.10743580628081872 GVSKTLDGP 9 Unmodified _GVSKTLDGP_ 0 0 0 ENSG00000131378|ENST00000334133|RFTN1 ENSG00000131378|ENST00000334133|RFTN1 ENSG00000131378|ENST00000334133|RFTN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2161865234375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 101.99 1 101.99 101.49 102.49 0 0 0 0 0.23508 1 20028 20028 12.532 0.89125 1 18408 3672 12034 12038 18418 18418 0.019015056264720442 GVSKTLDGP 9 Unmodified _GVSKTLDGP_ 0 0 0 ENSG00000131378|ENST00000334133|RFTN1 ENSG00000131378|ENST00000334133|RFTN1 ENSG00000131378|ENST00000334133|RFTN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2359619140625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 65.608 1 62.325 61.825 62.825 -3.2832 0 0 0 0.23508 1 12338 12338 8.5933 0 1 18409 3672 12034 12038 18419 18419 0.019015056264720442 GVSLAVEYDE 10 Unmodified _GVSLAVEYDE_ 0 0 0 REV__ENSG00000062725|ENST00000083182|APPBP2 REV__ENSG00000062725|ENST00000083182|APPBP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.260009765625 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 148 1 148 147.5 148.5 0 0 0 0 0.22544 1 29614 29614 19.257 5.3509 1 + 18410 14155 12035 12039 18420 18420 -0.039508676184368596 GVSLAWSTFN 10 Unmodified _GVSLAWSTFN_ 0 0 0 ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF ENST00000435761.5_1_3:184018386-184019655:+|nuORF ENST00000435761.5_1_3:184018386-184019655:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2738647460938 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 143.55 1 143.55 143.05 144.05 0 0 0 0 0.22544 1 28647 28647 19.257 5.3509 1 18411 9830 12036 12040 18421 18421 -0.01303133936426093 GVSLDTQHLP 10 Unmodified _GVSLDTQHLP_ 0 0 0 REV__ENSG00000162728|ENST00000368088|KCNJ9 REV__ENSG00000162728|ENST00000368088|KCNJ9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2675170898438 2 533.780013 1065.54547 0.045816 2.4456E-05 0.25364 0.00013539 0.29946 0.00015985 533.7804479040841 85.095 0.17073 81.431 81.365 81.536 -3.6641 6 4 2 0 0 0 0.70987 1 16644 16644 24.021 10.115 1 511450 + 18412 17526 12037 12041 18422 18422 0.015322510922715082 GVSLDTQHLP 10 Unmodified _GVSLDTQHLP_ 0 0 0 REV__ENSG00000162728|ENST00000368088|KCNJ9 REV__ENSG00000162728|ENST00000368088|KCNJ9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 533.780013 1065.54547 0.06465 3.4509E-05 0.15908 8.4912E-05 0.22373 0.00011942 533.7804566504891 84.97 0.10651 81.258 81.184 81.291 -3.7117 -0.086245 -6.1367E-05 NaN 18.146 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 370590 + 18413 17526 12037 12041 0.015322510922715082 GVSLDVPDTY 10 Unmodified _GVSLDVPDTY_ 0 0 0 REV__ENST00000486074.2_1_10:60966594-61005348:+|nuORF REV__ENST00000486074.2_1_10:60966594-61005348:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.272705078125 2 533.258579 1064.50261 0.41627 0.00022198 1.2176 0.00064928 1.6338 0.00087126 533.2589115406362 50.772 0.27198 47.727 47.53 47.802 -3.0453 11 7 2 0 0 0 0.79872 1 9320 9320 13.906 0 1 806170 + 18414 17770 12038 12042 18423 18423 -0.02706563755782554 GVSLGSSL 8 Unmodified _GVSLGSSL_ 0 0 0 ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 133.21 1 133.21 132.71 133.71 0 0 0 0 0.2074 1 26350 26350 19.439 4.8573 1 18415 4296 12039 12043 18424 18424 0.015661625349594033 GVSLKFPLW 9 Unmodified _GVSLKFPLW_ 0 0 0 ENST00000531428.1_1_11:17099415-17121458:-|nuORF ENST00000531428.1_1_11:17099415-17121458:-|nuORF ENST00000531428.1_1_11:17099415-17121458:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6793823242188 2 523.805303 1045.59605 0.34808 0.00018232 -0.48595 -0.00025455 -0.13788 -7.2222E-05 523.8050216169553 143.97 0.63464 139.02 138.74 139.38 -4.9445 26 17 2 0 0 0 0.8319 1 27807 27807 12.532 7.2347 1 3073400 18416 10968 12040 12044 18425 18425 0.07507825207926544 GVSLPFLSSH 10 Unmodified _GVSLPFLSSH_ 0 0 0 ENST00000320954.10_2_3:33184083-33184542:+|nuORF ENST00000320954.10_2_3:33184083-33184542:+|nuORF ENST00000320954.10_2_3:33184083-33184542:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.28125 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 144.67 1 139.72 139.22 140.22 -4.9445 0 0 0 0.22588 1 27950 27950 9.3831 0.63772 1 18417 8715 12041 12045 18426 18426 0.025174564432290936 GVSLPMGIYEN 11 Unmodified _GVSLPMGIYEN_ 0 0 0 ENST00000503328.1_1_4:160150550-160150679:+|nuORF ENST00000503328.1_1_4:160150550-160150679:+|nuORF ENST00000503328.1_1_4:160150550-160150679:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2539672851562 2 590.289356 1178.56416 NaN NaN NaN NaN NaN NaN NaN 133.89 1 133.89 133.39 134.39 0 0 0 0 0.21513 1 26495 26495 15.248 2.7169 1 18418 10643 12042 12046 18427 18427 -0.01797955328174794 GVSLSFEGVW 10 Unmodified _GVSLSFEGVW_ 0 0 0 REV__nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1 REV__nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2735595703125 2 540.771657 1079.52876 0.29583 0.00015998 2.9408 0.0015903 3.2366 0.0017503 541.2733054468727 137.49 0.35548 137.49 137.23 137.59 0 13 9 2 0 0 0 0.71097 1 27252 27252 10.074 0 1 9178800 + 18419 16998 12043 12047 18428 18428 -0.007822497936558648 GVSLSSYLEGL 11 Unmodified _GVSLSSYLEGL_ 0 0 0 nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B nc|ENSG00000101166|Q9Y3B1-2|PRELID3B nc|ENSG00000101166|Q9Y3B1-2|PRELID3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1172180175781 3 375.532645 1123.5761 0.1111 4.1723E-05 0.072386 2.7183E-05 0.18349 6.8906E-05 375.532485502678 36.824 0.37633 34.476 34.311 34.687 -2.3479 22 10 3 0 0 0 0.79196 1 6524 6524 4.7159 0 1 893760 18420 2042 12044 12048 18429 18429 0.019259846866816588 GVSLSSYLEGL 11 Unmodified _GVSLSSYLEGL_ 0 0 0 nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B nc|ENSG00000101166|Q9Y3B1-2|PRELID3B nc|ENSG00000101166|Q9Y3B1-2|PRELID3B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.532645 1123.5761 -0.16655 -6.2544E-05 0.28279 0.0001062 0.11625 4.3654E-05 375.5326933881909 34.455 0.44241 34.455 34.212 34.654 0 -0.0071169 -5.5664E-05 NaN 4.7159 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1003700 18421 2042 12044 12048 0.019259846866816588 GVSLSSYLEGL 11 Unmodified _GVSLSSYLEGL_ 0 0 0 nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B nc|ENSG00000101166|Q9Y3B1-2|PRELID3B nc|ENSG00000101166|Q9Y3B1-2|PRELID3B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.532645 1123.5761 -0.63992 -0.00024031 0.63872 0.00023986 -0.0011943 -4.4852E-07 375.5327604255071 36.938 0.45056 34.469 34.188 34.639 -2.4688 0.0069662 0.00034532 NaN 4.7159 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 845530 18422 2042 12044 12048 0.019259846866816588 GVSLTAMKGNC 11 Unmodified _GVSLTAMKGNC_ 0 0 0 REV__ENST00000506946.1_1_3:131207627-131219327:-|nuORF REV__ENST00000506946.1_1_3:131207627-131219327:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.26025390625 2 540.762452 1079.51035 0.17439 9.4303E-05 -2.1113 -0.0011417 -1.9369 -0.0010474 540.7621601406769 141.47 0.17961 136.48 136.38 136.56 -4.9877 5 4 2 0 0 0 0.75285 1 27243 27243 8.1555 0.24537 1 1771600 + 18423 15385 12045 12049 18430 18430 -0.026224510315387306 GVSLTYYA 8 Unmodified _GVSLTYYA_ 0 0 0 ENSG00000158683|ENST00000289672|PKD1L1;PKD1L1|p.R2615Lfs*97|1|0.05|ENSG00000158683|chr7:47803328-47803329|-/TTTATCA|frameshift_variant ENSG00000158683|ENST00000289672|PKD1L1 ENSG00000158683|ENST00000289672|PKD1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2203063964844 2 437.221268 872.427984 NaN NaN NaN NaN NaN NaN NaN 144.48 1 144.48 143.98 144.98 0 0 0 0 0.21323 1 28868 28868 14.582 2.9414 1 18424 5177 12046 12050 18431 18431 -0.013332817765331129 GVSMFNRPH 9 Unmodified _GVSMFNRPH_ 0 0 0 ENST00000466421.5_1_6:10723434-10730896:+|nuORF;ENSG00000111843|ENST00000229563|TMEM14C ENST00000466421.5_1_6:10723434-10730896:+|nuORF ENST00000466421.5_1_6:10723434-10730896:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2671508789062 2 522.755818 1043.49708 -1.1566 -0.0006046 3.3316 0.0017416 2.175 0.001137 522.7585480389906 18.131 0.20492 16.616 16.507 16.712 -1.5148 8 5 2 0 0 0 0.87258 1 2650 2650 1.8442 0 1 130430 18425 2653 12047 12051 18432 18432 -0.022925210286075526 GVSMLSVV 8 Unmodified _GVSMLSVV_ 0 0 0 nc|ENSG00000242485|Q9BYC9-2|MRPL20 nc|ENSG00000242485|Q9BYC9-2|MRPL20 nc|ENSG00000242485|Q9BYC9-2|MRPL20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 396.5279235839844 2 396.220214 790.425876 NaN NaN NaN NaN NaN NaN NaN 38.187 1 38.187 37.687 38.687 0 0 0 0 0.2343 1 7077 7077 0.62683 0 1 18426 12619 12048 12052 18433 18433 0.022279662140249457 GVSNRCIT 8 Unmodified _GVSNRCIT_ 0 0 0 CSTF1|p.N317Kfs*3|1|0.07|ENSG00000101138|chr20:56399266-56399267|-/A|frameshift_variant;CSTF1|p.G395Afs*23|1|0.04|ENSG00000101138|chr20:56403613-56403614|GG/-|frameshift_variant;ENSG00000101138|ENST00000217109|CSTF1 CSTF1|p.N317Kfs*3|1|0.07|ENSG00000101138|chr20:56399266-56399267|-/A|frameshift_variant CSTF1|p.N317Kfs*3|1|0.07|ENSG00000101138|chr20:56399266-56399267|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.243408203125 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 73.896 1 73.896 73.396 74.396 0 0 0 0 0.23366 1 14339 14339 0.0082765 0 1 18427 736 12049 12053 18434 18434 -0.012835877026191156 GVSNRCIT 8 Unmodified _GVSNRCIT_ 0 0 0 CSTF1|p.N317Kfs*3|1|0.07|ENSG00000101138|chr20:56399266-56399267|-/A|frameshift_variant;CSTF1|p.G395Afs*23|1|0.04|ENSG00000101138|chr20:56403613-56403614|GG/-|frameshift_variant;ENSG00000101138|ENST00000217109|CSTF1 CSTF1|p.N317Kfs*3|1|0.07|ENSG00000101138|chr20:56399266-56399267|-/A|frameshift_variant CSTF1|p.N317Kfs*3|1|0.07|ENSG00000101138|chr20:56399266-56399267|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2396240234375 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 98.88 1 94.611 94.111 95.111 -4.2692 0 0 0 0.23366 1 18904 18904 0.0082765 0 1 18428 736 12049 12053 18435 18435 -0.012835877026191156 GVSPGHIELSR 11 Unmodified _GVSPGHIELSR_ 0 0 0 ENST00000439057.5_1_1:44172836-44172971:-|nuORF ENST00000439057.5_1_1:44172836-44172971:-|nuORF ENST00000439057.5_1_1:44172836-44172971:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.31103515625 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 168.84 1 163.97 163.47 164.47 -4.873 0 0 0 0.224 1 33317 33317 13.042 3.6593 1 18429 9868 12050 12054 18436 18436 0.04019031249208638 GVSPKSSTLPN 11 Unmodified _GVSPKSSTLPN_ 0 0 0 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7808837890625 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 165.43 1 165.43 164.93 165.93 0 0 0 0 0.1931 1 33570 33570 20.415 4.2654 1 + 18430 25044 12051 12055 18437 18437 0.03232520263782135 GVSPKSSTLPN 11 Unmodified _GVSPKSSTLPN_ 0 0 0 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7930297851562 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 165.49 1 165.49 164.99 165.99 0 0 0 0 0.16232 1 33593 33593 26.268 4.5215 1 + 18431 25044 12051 12055 18438 18438 0.03232520263782135 GVSPLYLVREA 11 Unmodified _GVSPLYLVREA_ 0 0 0 REV__ENST00000489713.5_1_13:101277731-101290025:-|nuORF REV__ENST00000489713.5_1_13:101277731-101290025:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.29833984375 2 602.340238 1202.66592 NaN NaN NaN NaN NaN NaN NaN 145.34 1 140.67 140.17 141.17 -4.6694 0 0 0 0.22209 1 28808 28808 13.615 0.74226 1 + 18432 15804 12052 12056 18439 18439 0.07269659085909552 GVSPPGPGRR 10 Unmodified _GVSPPGPGRR_ 0 0 0 ENST00000464782.5_1_3:141772982-141868333:-|nuORF;ENST00000489671.5_2_3:141820662-141868333:-|nuORF;ENST00000475734.5_2_3:141724317-141868333:-|nuORF ENST00000464782.5_1_3:141772982-141868333:-|nuORF ENST00000464782.5_1_3:141772982-141868333:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2677307128906 2 490.275232 978.535912 NaN NaN NaN NaN NaN NaN NaN 48.948 1 45.941 45.441 46.441 -3.0068 0 0 0 0.22588 1 8968 8968 10.074 0.72649 1 18433 10113 12053 12057 18440 18440 0.045785275974253636 GVSPTLLVPP 10 Unmodified _GVSPTLLVPP_ 0 0 0 REV__ENST00000391788.6_1_19:52901139-52901724:+|nuORF REV__ENST00000391788.6_1_19:52901139-52901724:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2737731933594 2 490.294768 978.574983 NaN NaN NaN NaN NaN NaN NaN 141.54 1 141.54 141.04 142.04 0 0 0 0 0.22588 1 28202 28202 7.2892 0.56607 1 + 18434 21202 12054 12058 18441 18441 0.08483815108422732 GVSQEQFH 8 Unmodified _GVSQEQFH_ 0 0 0 REV__nc|ENSG00000188707|Q96FA7|ZBED10P REV__nc|ENSG00000188707|Q96FA7|ZBED10P MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.1971740722656 3 311.147125 930.419545 NaN NaN NaN NaN NaN NaN NaN 24.091 1 22.238 21.738 22.738 -1.8534 0 0 0 0.21486 1 3904 3904 1.8442 0 1 + 18435 24218 12055 12059 18442 18442 -0.04844835693143068 GVSQGAPKQLP 11 Unmodified _GVSQGAPKQLP_ 0 0 0 REV__ENST00000360803.8_1_10:1034081-1034213:+|nuORF REV__ENST00000360803.8_1_10:1034081-1034213:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2633056640625 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 154.83 1 149.55 149.05 150.05 -5.2854 0 0 0 0.22595 1 30027 30027 11.495 0.67078 1 + 18436 20870 12056 12060 18443 18443 0.05568530363279933 GVSQVENLLQ 10 Unmodified _GVSQVENLLQ_ 0 0 0 ENST00000319080.7_12:122611886-122614151:+|nuORF ENST00000319080.7_12:122611886-122614151:+|nuORF ENST00000319080.7_12:122611886-122614151:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7955322265625 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 28.49 1 26.735 26.235 27.235 -1.7552 0 0 0 0.22588 1 4811 4811 10.824 1.4765 1 18437 8697 12057 12061 18444 18444 0.032325202637593975 GVSQVIANPM 10 Unmodified _GVSQVIANPM_ 0 0 0 REV__nc|ENSG00000156709|O95831-5|AIFM1 REV__nc|ENSG00000156709|O95831-5|AIFM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.1555480957031 3 339.179548 1014.51682 NaN NaN NaN NaN NaN NaN NaN 76.415 1 72.692 72.192 73.192 -3.7227 0 0 0 0.22588 1 14469 14469 0.77653 0 1 + 18438 17268 12058 12062 18445 18445 0.010138101914890285 GVSQVIANPM 10 Unmodified _GVSQVIANPM_ 0 0 0 REV__nc|ENSG00000156709|O95831-5|AIFM1 REV__nc|ENSG00000156709|O95831-5|AIFM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.1778869628906 3 339.179548 1014.51682 NaN NaN NaN NaN NaN NaN NaN 87.234 1 83.284 82.784 83.784 -3.9503 0 0 0 0.22588 1 16614 16614 0.77653 0.31819 1 + 18439 17268 12058 12062 18446 18446 0.010138101914890285 GVSQVIANPM 10 Unmodified _GVSQVIANPM_ 0 0 0 REV__nc|ENSG00000156709|O95831-5|AIFM1 REV__nc|ENSG00000156709|O95831-5|AIFM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.1906433105469 3 339.179548 1014.51682 NaN NaN NaN NaN NaN NaN NaN 73.22 1 69.682 69.182 70.182 -3.5385 0 0 0 0.22588 1 13894 13894 0.77653 0.32202 1 + 18440 17268 12058 12062 18447 18447 0.010138101914890285 GVSRDLCY 8 Unmodified _GVSRDLCY_ 0 0 0 ENSG00000184344|ENST00000329913|GDF3 ENSG00000184344|ENST00000329913|GDF3 ENSG00000184344|ENST00000329913|GDF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 456.717041015625 2 456.715827 911.417102 NaN NaN NaN NaN NaN NaN NaN 94.11 1 89.966 89.466 90.466 -4.1435 0 0 0 0.22684 1 17947 17947 1.4551 0 1 18441 6904 12059 12063 18448 18448 -0.04215007422476447 GVSREQFMQ 9 Unmodified _GVSREQFMQ_ 0 0 0 ENST00000452512.6_1_2:200808545-200820193:-|nuORF;ENST00000493181.1_1_2:200812997-200820193:-|nuORF;ENSG00000162971|ENST00000354611|TYW5 ENST00000452512.6_1_2:200808545-200820193:-|nuORF ENST00000452512.6_1_2:200808545-200820193:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2587280273438 2 541.258391 1080.50223 NaN NaN NaN NaN NaN NaN NaN 137.92 1 137.92 137.42 138.42 0 0 0 0 0.23508 1 27368 27368 7.9102 1.187 1 18442 5387 12060 12064 18449 18449 -0.034802619566335125 GVSRKFKRRVQ 11 Unmodified _GVSRKFKRRVQ_ 0 0 0 ENST00000585852.5_1_17:43309778-43311670:+|nuORF ENST00000585852.5_1_17:43309778-43311670:+|nuORF ENST00000585852.5_1_17:43309778-43311670:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 680.915771484375 2 680.917844 1359.82114 NaN NaN NaN NaN NaN NaN NaN 35.008 1 32.755 32.255 33.255 -2.2527 0 0 0 0.23698 1 6154 6154 1.3295 0.80477 1 18443 11538 12061 12065 18450 18450 0.1556174773083967 GVSRLLQVAE 10 Unmodified _GVSRLLQVAE_ 0 0 0 REV__nc|ENSG00000180900|Q14160-2|SCRIB REV__nc|ENSG00000180900|Q14160-2|SCRIB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.56011962890625 3 357.876746 1070.60841 -0.29302 -0.00010487 0.40316 0.00014428 0.11014 3.9416E-05 357.876852234277 33.769 0.63169 31.553 31.283 31.915 -2.2158 33 17 3 0 0 0 0.91149 1 5901 5901 3.3196 0 1 2595600 + 18444 18703 12062 12066 18451 18451 0.07592816880310238 GVSRQVRIK 9 Unmodified _GVSRQVRIK_ 0 0 0 ENSG00000198909|ENST00000361733|MAP3K3;nc|ENSG00000198909|Q99759-2|MAP3K3 ENSG00000198909|ENST00000361733|MAP3K3 ENSG00000198909|ENST00000361733|MAP3K3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2725830078125 2 521.827632 1041.64071 0.34251 0.00017873 -0.39697 -0.00020715 -0.054456 -2.8417E-05 522.3283069633287 143.33 0.17148 138.43 138.34 138.51 -4.8982 6 4 2 0 0 0 0.84208 1 27650 27650 7.2892 0 1 2643400 18445 7520 12063 12067 18452 18452 0.12155649073974928 GVSRRTQK 8 Unmodified _GVSRRTQK_ 0 0 0 ENSG00000120896|ENST00000240123|SORBS3;nc|ENSG00000120896|O60504-2|SORBS3 ENSG00000120896|ENST00000240123|SORBS3 ENSG00000120896|ENST00000240123|SORBS3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.19708251953125 3 311.185914 930.535912 NaN NaN NaN NaN NaN NaN NaN 12.79 1 12.79 12.29 13.29 0 0 0 0 0.21486 1 1805 1805 0.45834 0 1 18446 3160 12064 12068 18453 18453 0.06786527597409986 GVSRSAGK 8 Unmodified _GVSRSAGK_ 0 0 0 ENSG00000059769|ENST00000313525|DNAJC25;nc|ENSG00000059769|Q9H1X3-3|DNAJC25 ENSG00000059769|ENST00000313525|DNAJC25 ENSG00000059769|ENST00000313525|DNAJC25 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2171936035156 2 381.216852 760.419151 NaN NaN NaN NaN NaN NaN NaN 15.986 1 14.77 14.27 15.27 -1.2159 0 0 0 0.21486 1 2493 2493 9.3474 3.587 1 18447 1301 12065 12069 18454 18454 0.02935789377670517 GVSRVGDEP 9 Unmodified _GVSRVGDEP_ 0 0 0 REV__ENST00000587841.5_1_18:44641693-44676827:-|nuORF REV__ENST00000587841.5_1_18:44641693-44676827:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2294616699219 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 109.45 1 105.07 104.57 105.57 -4.3776 0 0 0 0.23508 1 21570 21570 7.9102 1.187 1 + 18448 23279 12066 12070 18455 18455 -0.0148856652166387 GVSRYVRCC 9 Unmodified _GVSRYVRCC_ 0 0 0 REV__ENST00000234420.9_1_2:48028259-48030580:+|nuORF REV__ENST00000234420.9_1_2:48028259-48030580:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2806396484375 2 521.749679 1041.4848 -1.067 -0.00055668 0.35366 0.00018452 -0.71329 -0.00037216 521.7498113827011 18.921 0.32348 17.596 17.398 17.721 -1.3251 18 8 3 0 0 0 0.85111 1 2849 2849 3.5965 0 1 1538000 + 18449 20076 12067 12071 18456 18456 -0.03427880763297253 GVSSDTVLLPY 11 Unmodified _GVSSDTVLLPY_ 0 0 0 FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant;ENSG00000073910|ENST00000542859|FRY;FRY|p.L1623Wfs*22|1|0.44|ENSG00000073910|chr13:32224331-32224331|C/-|frameshift_variant FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3301391601562 2 575.803154 1149.59175 0.22943 0.00013211 0.43447 0.00025017 0.6639 0.00038228 575.8035184180097 135.54 0.63669 130.71 130.38 131.02 -4.8307 32 17 2 0 0 0 0.40695 1 26120 26120 1.4074 0 1 3817000 18450 1489 12068 12072 18457 18457 0.02294271203709286 GVSSEVEVL 9 Unmodified _GVSSEVEVL_ 0 0 0 ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335|PPFIA4;nc|ENSG00000177380|O75145-2|PPFIA3;nc|ENSG00000139220|O75334-3|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-2|PPFIA2;ENSG00000177380|ENST00000334186|PPFIA3;nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2;ENST00000602716.5_1_19:49631560-49640169:+|nuORF;PPFIA3|p.A911Rfs*78|1|0.2|ENSG00000177380|chr19:49142984-49142985|-/C|frameshift_variant;PPFIA2|p.H786Lfs*48|1|0.16|ENSG00000139220|chr12:81341113-81341116|GTGA/-|frameshift_variant;PPFIA3|p.S658Pfs*70|1|0.24|ENSG00000177380|chr19:49138317-49138317|C/-|frameshift_variant;PPFIA2|p.F632Lfs*18|1|0.39|ENSG00000139220|chr12:81353217-81353217|A/-|frameshift_variant;ENST00000421230.6_1_19:49631605-49643027:+|nuORF;ENSG00000139220|ENST00000549396|PPFIA2;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1 ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000131626|Q13136-2|PPFIA1 ENSG00000143847|ENST00000295706|PPFIA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2442626953125 2 459.742565 917.470577 0.15024 6.907E-05 -0.45196 -0.00020779 -0.30172 -0.00013871 459.74218285568793 87.748 0.53098 83.997 83.588 84.118 -3.7501 23 14 2 0 0 0 0.26282 1 16762 16762 1.2148 0 1 764710 18451 4524;3685 12069 12073 18458 18458 0.008540685610569199 GVSSFSSGMC 10 Unmodified _GVSSFSSGMC_ 0 0 0 nc|ENSG00000187905|Q6ZQY2-2|LRRC74B nc|ENSG00000187905|Q6ZQY2-2|LRRC74B nc|ENSG00000187905|Q6ZQY2-2|LRRC74B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 321.2048645019531 3 321.129977 960.368103 NaN NaN NaN NaN NaN NaN NaN 26.972 1 25.337 24.837 25.837 -1.6347 0 0 0 2.8426 1 4493 4493 0.0013812 0 1 18452 12529 12070 12074 18459 18459 -0.11366663773708297 GVSSGGRC 8 Unmodified _GVSSGGRC_ 0 0 0 REV__PDE11A|p.T167Pfs*14|1|0.38|ENSG00000128655|chr2:178071940-178071940|G/-|frameshift_variant REV__PDE11A|p.T167Pfs*14|1|0.38|ENSG00000128655|chr2:178071940-178071940|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 722.3939208984375 1 722.324999 721.317722 0.45483 0.00032854 -0.033753 -2.4381E-05 0.42108 0.00030416 722.3280484596645 172.18 0.21249 172.18 172.11 172.33 0 6 5 2 0 0 0 0.83982 1 35516 35516 2.5775 0 1 4044000 + 18453 15933 12071 12075 18460 18460 -0.05408405316552489 GVSSKAGR 8 Unmodified _GVSSKAGR_ 0 0 0 tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1 tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1 tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21435546875 2 381.216852 760.419151 NaN NaN NaN NaN NaN NaN NaN 25.2 1 23.347 22.847 23.847 -1.8534 0 0 0 0.23749 1 4131 4131 0.12286 0.12286 1 18454 25919 12072 12076 18461 18461 0.02935789377670517 GVSSLINWTTY 11 Unmodified _GVSSLINWTTY_ 0 0 0 REV__ENSG00000198804|ENST00000361624|MT-CO1 REV__ENSG00000198804|ENST00000361624|MT-CO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.778076171875 2 620.814053 1239.61355 0.54105 0.00033589 -0.28071 -0.00017427 0.26035 0.00016163 620.8137963378858 100.9 1.0555 96.603 96.156 97.212 -4.297 106 30 5 0 0 0 0.48798 1 19269 19269 23.79 12.149 1 82008000 + 18455 19453 12073 12077 18462 18462 0.0033307595226688136 GVSSLINWTTY 11 Unmodified _GVSSLINWTTY_ 0 0 0 REV__ENSG00000198804|ENST00000361624|MT-CO1 REV__ENSG00000198804|ENST00000361624|MT-CO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 620.814053 1239.61355 0.36587 0.00022714 -0.17821 -0.00011064 0.18766 0.0001165 620.8138786379764 96.598 1.0801 96.598 96.182 97.262 0 -0.0026408 6.1327E-05 NaN 23.79 101 30 5 NaN NaN NaN NaN 0 NaN NaN 0 82800000 + 18456 19453 12073 12077 0.0033307595226688136 GVSSLINWTTY 11 Unmodified _GVSSLINWTTY_ 0 0 0 REV__ENSG00000198804|ENST00000361624|MT-CO1 REV__ENSG00000198804|ENST00000361624|MT-CO1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 620.814053 1239.61355 0.54105 0.00033589 -0.28071 -0.00017427 0.26035 0.00016163 620.8137963378858 100.9 1.0555 96.603 96.156 97.212 -4.297 0.0026408 -6.5936E-05 NaN 23.79 106 30 5 NaN NaN NaN NaN 0 NaN NaN 0 82008000 + 18457 19453 12073 12077 0.0033307595226688136 GVSSPRQQG 9 Unmodified _GVSSPRQQG_ 0 0 0 REV__nc|ENSG00000149091|Q13574-1|DGKZ REV__nc|ENSG00000149091|Q13574-1|DGKZ MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2376708984375 2 458.235773 914.456993 NaN NaN NaN NaN NaN NaN NaN 142.35 1 137.69 137.19 138.19 -4.656 0 0 0 0.23508 1 28138 28138 12.532 0 1 + 18458 24091 12074 12078 18463 18463 -0.003657444275177113 GVSSSHSWIS 10 Unmodified _GVSSSHSWIS_ 0 0 0 REV__ENST00000466137.1_1_9:77702567-77702675:-|nuORF REV__ENST00000466137.1_1_9:77702567-77702675:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.68017578125 2 523.748713 1045.48287 NaN NaN NaN NaN NaN NaN NaN 140.04 1 135.39 134.89 135.89 -4.6439 0 0 0 0.22588 1 27647 27647 6.7232 0.51738 1 + 18459 21965 12075 12079 18464 18464 -0.03804894975883144 GVSSSVGV 8 Unmodified _GVSSSVGV_ 0 0 0 REV__nc|ENSG00000188549|Q6ZUT6-3|CCDC9B REV__nc|ENSG00000188549|Q6ZUT6-3|CCDC9B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 346.1858215332031 2 346.184686 690.354819 NaN NaN NaN NaN NaN NaN NaN 126.1 1 121.46 120.96 121.96 -4.6495 0 0 0 0.21486 1 24262 24262 2.8892 2.0956 1 + 18460 23025 12076 12080 18465 18465 -0.002744104991279528 GVSTLMWL 8 Unmodified _GVSTLMWL_ 0 0 0 REV__SLC22A4|p.V463Gfs*33|1|0.27|ENSG00000197208|chr5:132335938-132335939|-/G|frameshift_variant REV__SLC22A4|p.V463Gfs*33|1|0.27|ENSG00000197208|chr5:132335938-132335939|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7694091796875 2 453.741314 905.468075 NaN NaN NaN NaN NaN NaN NaN 68.989 1 68.989 68.489 69.489 0 0 0 0 0.21323 1 13347 13347 14.582 0 1 + 18461 19314 12077 12081 18466 18466 0.011559416223917651 GVSTRLKR 8 Unmodified _GVSTRLKR_ 0 0 0 REV__PCLO|p.R1529L|1|0.52|ENSG00000186472|chr7:82956367-82956367|C/A|missense_variant REV__PCLO|p.R1529L|1|0.52|ENSG00000186472|chr7:82956367-82956367|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2212829589844 2 458.787976 915.561398 0.046912 2.1523E-05 0.18864 8.6547E-05 0.23555 0.00010807 458.78795680860395 154.67 0.9514 149.9 149.46 150.41 -4.7791 83 26 4 0 0 0 0.98792 1 30751 30751 5.2307 2.9279 1 26503000 + 18462 24448 12078 12082 18467 18467 0.10024002119837405 GVSTRLKR 8 Unmodified _GVSTRLKR_ 0 0 0 REV__PCLO|p.R1529L|1|0.52|ENSG00000186472|chr7:82956367-82956367|C/A|missense_variant REV__PCLO|p.R1529L|1|0.52|ENSG00000186472|chr7:82956367-82956367|C/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.787976 915.561398 0.10742 4.9283E-05 0.2172 9.965E-05 0.32462 0.00014893 458.78796121157325 155.37 1.2575 150.08 149.6 150.86 -5.2854 0.20873 8.3654E-05 NaN 5.2307 93 34 4 NaN NaN NaN NaN 0 NaN NaN 0 35101000 + 18463 24448 12078 12082 0.10024002119837405 GVSTVAFNRTV 11 Unmodified _GVSTVAFNRTV_ 0 0 0 REV__ENSG00000141337|ENST00000621439|ARSG REV__ENSG00000141337|ENST00000621439|ARSG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3145141601562 2 575.814387 1149.61422 -0.29919 -0.00017228 -0.43378 -0.00024978 -0.73297 -0.00042205 575.8139629663799 111.34 0.62399 106.92 106.58 107.2 -4.4231 33 17 3 0 0 0 0.59903 1 21896 21896 18.146 0 1 3011600 + 18464 16620 12079 12083 18468 18468 0.04539915391978866 GVSVEIPPSDS 11 Unmodified _GVSVEIPPSDS_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7943115234375 2 543.769311 1085.52407 NaN NaN NaN NaN NaN NaN NaN 143.63 1 143.63 143.13 144.13 0 0 0 0 0.22501 1 28667 28667 12.241 2.1667 1 18465 2877 12080 12084 18469 18469 -0.015271787270876303 GVSVLWWD 8 Unmodified _GVSVLWWD_ 0 0 0 ENST00000398988.7_2_17:25951918-25952683:+|nuORF ENST00000398988.7_2_17:25951918-25952683:+|nuORF ENST00000398988.7_2_17:25951918-25952683:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24383544921875 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 71.588 1 68.339 67.839 68.839 -3.2492 0 0 0 0.19492 1 13941 13941 26.341 5.8877 1 18466 9489 12081 12085 18470 18470 -0.011298866483002712 GVSVQYLR 8 Unmodified _GVSVQYLR_ 0 0 0 REV__ENSG00000178234|ENST00000430044|GALNT11 REV__ENSG00000178234|ENST00000430044|GALNT11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.77496337890625 3 307.843265 920.507966 NaN NaN NaN NaN NaN NaN NaN 24.364 1 24.364 23.864 24.864 0 0 0 0 0.21486 1 4195 4195 1.6526 0 1 + 18467 18596 12082 12086 18471 18471 0.0445320461733445 GVSVSLVN 8 Unmodified _GVSVSLVN_ 0 0 0 nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1 nc|ENSG00000133706|Q9P2J5-2|LARS1 nc|ENSG00000133706|Q9P2J5-2|LARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7215881347656 2 387.721436 773.428318 -0.092452 -3.5846E-05 0.44564 0.00017278 0.35319 0.00013694 387.7215178713328 33.216 0.73621 33.216 32.954 33.69 0 32 20 2 0 0 0 8448 1 6122 6122 4.2837 1.401 1 1096100 18468 3814 12083 12087 18472 18472 0.03254137943326896 GVSWLVVF 8 Unmodified _GVSWLVVF_ 0 0 0 SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant;ENSG00000196517|ENST00000372310|SLC6A9;nc|ENSG00000196517|P48067-3|SLC6A9;nc|ENSG00000196517|P48067|SLC6A9 SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75811767578125 2 453.757821 905.501089 NaN NaN NaN NaN NaN NaN NaN 133.93 1 133.93 133.43 134.43 0 0 0 0 0.23366 1 26504 26504 0.30703 0.29875 1 18469 7277 12084 12088 18473 18473 0.04455891736756712 GVSWLVVF 8 Unmodified _GVSWLVVF_ 0 0 0 SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant;ENSG00000196517|ENST00000372310|SLC6A9;nc|ENSG00000196517|P48067-3|SLC6A9;nc|ENSG00000196517|P48067|SLC6A9 SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7590637207031 2 453.757821 905.501089 NaN NaN NaN NaN NaN NaN NaN 142.73 1 138.07 137.57 138.57 -4.656 0 0 0 0.23366 1 28212 28212 0.0082765 0 1 18470 7277 12084 12088 18474 18474 0.04455891736756712 GVSWLVVF 8 Unmodified _GVSWLVVF_ 0 0 0 SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant;ENSG00000196517|ENST00000372310|SLC6A9;nc|ENSG00000196517|P48067-3|SLC6A9;nc|ENSG00000196517|P48067|SLC6A9 SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75799560546875 2 453.757821 905.501089 NaN NaN NaN NaN NaN NaN NaN 147.32 1 142.32 141.82 142.82 -5 0 0 0 0.21486 1 28517 28517 10.183 3.8293 1 18471 7277 12084 12088 18475 18475 0.04455891736756712 GVSWMDVEPGY 11 Unmodified _GVSWMDVEPGY_ 0 0 0 REV__ENSG00000152495|ENST00000282356|CAMK4 REV__ENSG00000152495|ENST00000282356|CAMK4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 620.3331909179688 2 620.271164 1238.52777 NaN NaN NaN NaN NaN NaN NaN 50.447 1 47.402 46.902 47.902 -3.0453 0 0 0 0.23264 1 9245 9245 6.2058 0.47393 1 + 18472 17113 12085 12089 18476 18476 -0.08194832224876336 GVSWNTVRY 9 Unmodified _GVSWNTVRY_ 0 0 0 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2699584960938 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 155.41 1 150.63 150.13 151.13 -4.7791 0 0 0 0.23508 1 30893 30893 8.5933 1.8701 1 18473 867 12086 12090 18477 18477 -0.0018031184229130304 GVSWPVNGL 9 Unmodified _GVSWPVNGL_ 0 0 0 REV__ENSG00000077063|ENST00000160373|CTTNBP2 REV__ENSG00000077063|ENST00000160373|CTTNBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2502746582031 2 464.747985 927.481417 0.020001 9.2956E-06 -0.096462 -4.4831E-05 -0.076461 -3.5535E-05 464.74807818534833 127.2 0.51163 122.58 122.27 122.78 -4.6172 19 14 2 0 0 0 0.48181 1 25108 25108 0.40827 0.335 1 1020400 + 18474 14356 12087 12091 18478 18478 0.01477515725991907 GVSYCNDG 8 Unmodified _GVSYCNDG_ 0 0 0 REV__DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant REV__DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.354248046875 1 814.303594 813.296318 0.49378 0.00040208 -4.0831 -0.0033249 -3.5893 -0.0029228 814.2949487308389 174.26 0.10814 174.26 174.17 174.27 0 4 2 2 0 0 0 0.83982 1 36052 36052 2.5775 0.27475 1 3987400 + 18475 13702 12088 12092 18479 18479 -0.11779835135928352 GVSYKELIKD 10 Unmodified _GVSYKELIKD_ 0 0 0 ENSG00000181215|ENST00000531445|C4orf50 ENSG00000181215|ENST00000531445|C4orf50 ENSG00000181215|ENST00000531445|C4orf50 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.33251953125 2 576.318971 1150.62339 0.29613 0.00017066 4.067 0.0023439 4.3631 0.0025146 576.3208923492648 138.2 0.20479 138.2 138.04 138.25 0 8 5 2 0 0 0 0.71097 1 27405 27405 10.074 2.7847 1 3461400 18476 6714 12089 12093 18480 18480 0.054102639576512956 GVSYPQLP 8 Unmodified _GVSYPQLP_ 0 0 0 ENSG00000141569|ENST00000269383|TRIM65 ENSG00000141569|ENST00000269383|TRIM65 ENSG00000141569|ENST00000269383|TRIM65 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 431.0934143066406 2 430.729261 859.443968 0.034079 1.4679E-05 -1.4607 -0.00062917 -1.4266 -0.00061449 430.72835975709114 27.985 0.3455 25.988 25.859 26.204 -1.9962 13 9 2 0 0 0 1.0249 1 4684 4684 2.5775 0 1 773140 18477 4385 12090 12094 18481 18481 0.008624244603652187 GVSYVFLFY 9 Unmodified _GVSYVFLFY_ 0 0 0 ENST00000489559.1_1_3:38175990-38178538:-|nuORF ENST00000489559.1_1_3:38175990-38178538:-|nuORF ENST00000489559.1_1_3:38175990-38178538:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7820434570312 2 547.781493 1093.54843 NaN NaN NaN NaN NaN NaN NaN 130.37 1 125.6 125.1 126.1 -4.7725 0 0 0 0.19697 1 25089 25089 1.2148 0.588 1 18478 10501 12091 12095 18482 18482 0.005401262170835253 GVTAICLGVRY 11 Unmodified _GVTAICLGVRY_ 0 0 0 CD72|p.T103_A111dup|1|0.05|ENSG00000137101|chr9:35616617-35616618|-/TGGCGGTCACTCCTAACAGCAGGCAGG|inframe_insertion;ENSG00000137101|ENST00000259633|CD72 CD72|p.T103_A111dup|1|0.05|ENSG00000137101|chr9:35616617-35616618|-/TGGCGGTCACTCCTAACAGCAGGCAGG|inframe_insertion CD72|p.T103_A111dup|1|0.05|ENSG00000137101|chr9:35616617-35616618|-/TGGCGGTCACTCCTAACAGCAGGCAGG|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3133544921875 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 152.7 1 147.48 146.98 147.98 -5.2209 0 0 0 0.22943 1 29595 29595 8.7454 1.1365 1 18479 448 12092 12096 18483 18483 0.047580475252971155 GVTAWLGDP 9 Unmodified _GVTAWLGDP_ 0 0 0 REV__ENST00000588774.1_1_17:73839881-73840376:-|nuORF REV__ENST00000588774.1_1_17:73839881-73840376:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23114013671875 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 33.539 1 31.323 30.823 31.823 -2.2158 0 0 0 0.22621 1 5846 5846 15.847 2.3393 1 + 18480 23300 12093 12097 18484 18484 -0.010864770279567892 GVTAYNINK 9 Unmodified _GVTAYNINK_ 0 0 0 SPG20|p.N606K|1|0.42|ENSG00000133104|chr13:36304548-36304548|G/C|missense_variant SPG20|p.N606K|1|0.42|ENSG00000133104|chr13:36304548-36304548|G/C|missense_variant SPG20|p.N606K|1|0.42|ENSG00000133104|chr13:36304548-36304548|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2645263671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 87.682 1 83.89 83.39 84.39 -3.7926 0 0 0 0.19512 1 17148 17148 12.241 0 1 18481 25782 12094 12098 18485 18485 0.023328834091330464 GVTCAACP 8 Unmodified _GVTCAACP_ 0 0 0 ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ZGRF1|p.E2096Rfs*4|1|0.33|ENSG00000138658|chr4:112539576-112539577|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-7|ZGRF1 ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.8569641113281 2 361.154017 720.293481 NaN NaN NaN NaN NaN NaN NaN 49.021 1 49.021 48.521 49.521 0 0 0 0 0.23749 1 9263 9263 0.12286 0 1 18482 4195 12095 12099 18486 18486 -0.07785381794451496 GVTCAACP 8 Unmodified _GVTCAACP_ 0 0 0 ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ZGRF1|p.E2096Rfs*4|1|0.33|ENSG00000138658|chr4:112539576-112539577|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-7|ZGRF1 ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.1510925292969 2 361.154017 720.293481 NaN NaN NaN NaN NaN NaN NaN 32.676 1 30.529 30.029 31.029 -2.1468 0 0 0 0.23749 1 5676 5676 0.12286 0 1 18483 4195 12095 12099 18487 18487 -0.07785381794451496 GVTCAACP 8 Unmodified _GVTCAACP_ 0 0 0 ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ZGRF1|p.E2096Rfs*4|1|0.33|ENSG00000138658|chr4:112539576-112539577|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-7|ZGRF1 ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.18890380859375 2 361.154017 720.293481 NaN NaN NaN NaN NaN NaN NaN 31.241 1 29.093 28.593 29.593 -2.1483 0 0 0 0.23749 1 5377 5377 0.12286 0 1 18484 4195 12095 12099 18488 18488 -0.07785381794451496 GVTCAACP 8 Unmodified _GVTCAACP_ 0 0 0 ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ZGRF1|p.E2096Rfs*4|1|0.33|ENSG00000138658|chr4:112539576-112539577|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-7|ZGRF1 ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.1235046386719 2 361.154017 720.293481 NaN NaN NaN NaN NaN NaN NaN 80.105 1 76.429 75.929 76.929 -3.676 0 0 0 0.21486 1 15267 15267 2.5775 1.7838 1 18485 4195 12095 12099 18489 18489 -0.07785381794451496 GVTEKEPKTY 10 Unmodified _GVTEKEPKTY_ 0 0 0 ENSG00000056277|ENST00000370978|ZNF280C;ZNF280C|p.M335Rfs*9|1|0.02|ENSG00000056277|chrX:130229120-130229121|-/ATCC|frameshift_variant ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3305053710938 2 576.300778 1150.587 NaN NaN NaN NaN NaN NaN NaN 87.62 1 83.866 83.366 84.366 -3.7544 0 0 0 2.8426 1 17136 17136 0.84494 0 1 18486 1279 12096 12100 18490 18490 0.017733870609617952 GVTEWYKLR 9 Unmodified _GVTEWYKLR_ 0 0 0 CAPN1|p.E226K|1|0.14|ENSG00000014216|chr11:65186255-65186255|G/A|missense_variant CAPN1|p.E226K|1|0.14|ENSG00000014216|chr11:65186255-65186255|G/A|missense_variant CAPN1|p.E226K|1|0.14|ENSG00000014216|chr11:65186255-65186255|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3133544921875 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 178.93 1 174.14 173.64 174.64 -4.7898 0 0 0 0.23508 1 36610 36610 0.6015 0 1 18487 381 12097 12101 18491 18491 0.04421120742927087 GVTFHNDSFQ 10 Unmodified _GVTFHNDSFQ_ 0 0 0 VPS13C|p.A1961T|1|0.5|ENSG00000129003|chr15:61931247-61931247|C/T|missense_variant VPS13C|p.A1961T|1|0.5|ENSG00000129003|chr15:61931247-61931247|C/T|missense_variant VPS13C|p.A1961T|1|0.5|ENSG00000129003|chr15:61931247-61931247|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3191528320312 2 576.259445 1150.50434 NaN NaN NaN NaN NaN NaN NaN 157.88 1 153.09 152.59 153.59 -4.7885 0 0 0 0.22588 1 31398 31398 6.7232 0.99131 1 18488 26570 12098 12102 18492 18492 -0.06489509947186889 GVTFHNDSFQ 10 Unmodified _GVTFHNDSFQ_ 0 0 0 VPS13C|p.A1961T|1|0.5|ENSG00000129003|chr15:61931247-61931247|C/T|missense_variant VPS13C|p.A1961T|1|0.5|ENSG00000129003|chr15:61931247-61931247|C/T|missense_variant VPS13C|p.A1961T|1|0.5|ENSG00000129003|chr15:61931247-61931247|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3178100585938 2 576.259445 1150.50434 0.2783 0.00016037 -2.2385 -0.00129 -1.9602 -0.0011296 576.7596988172152 157.69 0.1763 152.4 152.29 152.47 -5.2854 6 4 2 0 0 0 0.744 1 30588 30588 6.7232 0.51738 1 2561500 18489 26570 12098 12102 18493 18493 -0.06489509947186889 GVTFVLYY 8 Unmodified _GVTFVLYY_ 0 0 0 REV__CCR3|p.S42Y|1|0.09|ENSG00000183625|chr3:46265283-46265283|C/A|missense_variant REV__CCR3|p.S42Y|1|0.09|ENSG00000183625|chr3:46265283-46265283|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2544250488281 2 481.255111 960.49567 0.35991 0.00017321 -1.012 -0.00048702 -0.65207 -0.00031381 481.2547014183136 158.3 0.53458 153.02 152.62 153.15 -5.2712 22 14 2 0 0 0 0.59519 1 30660 30660 22.453 1.999 1 942240 + 18490 13314 12099 12103 18494 18494 0.013841681542771767 GVTGHILRV 9 Unmodified _GVTGHILRV_ 0 0 0 REV__ENSG00000165478|ENST00000298251|HEPACAM REV__ENSG00000165478|ENST00000298251|HEPACAM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.8252868652344 3 317.86266 950.566149 -1.3947 -0.00044333 1.1899 0.00037822 -0.20486 -6.5117E-05 317.8630368755698 21.519 0.32044 19.798 19.598 19.919 -1.7211 13 8 2 0 0 0 0.64461 1 3336 3336 0.073264 0 1 638900 + 18491 17773 12100 12104 18495 18495 0.08888886262604956 GVTGHRGARS 10 Unmodified _GVTGHRGARS_ 0 0 0 REV__ENST00000368842.9_1_10:126150409-126150481:+|nuORF REV__ENST00000368842.9_1_10:126150409-126150481:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.1902160644531 3 333.181051 996.521324 NaN NaN NaN NaN NaN NaN NaN 73.856 1 73.856 73.356 74.356 0 0 0 0 0.22588 1 14331 14331 1.7423 0.26037 1 + 18492 20950 12101 12105 18496 18496 0.022924554492760763 GVTGHRGARS 10 Unmodified _GVTGHRGARS_ 0 0 0 REV__ENST00000368842.9_1_10:126150409-126150481:+|nuORF REV__ENST00000368842.9_1_10:126150409-126150481:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.1686096191406 3 333.181051 996.521324 NaN NaN NaN NaN NaN NaN NaN 100.86 1 96.7 96.2 97.2 -4.1594 0 0 0 0.22588 1 19828 19828 1.7423 0.26037 1 + 18493 20950 12101 12105 18497 18497 0.022924554492760763 GVTGNDRYY 9 Unmodified _GVTGNDRYY_ 0 0 0 ENST00000562354.2_1_16:31719651-31719993:+|nuORF ENST00000562354.2_1_16:31719651-31719993:+|nuORF ENST00000562354.2_1_16:31719651-31719993:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2710571289062 2 522.740888 1043.46722 0.46505 0.0002431 -0.78019 -0.00040784 -0.31514 -0.00016474 522.7404606499704 33.21 0.75321 30.995 30.739 31.492 -2.2158 46 20 3 0 0 0 0.67531 1 5853 5853 7.9102 2.1497 1 3601700 18494 11313 12102 12106 18498 18498 -0.0527718149296561 GVTGQRMT 8 Unmodified _GVTGQRMT_ 0 0 0 REV__ENST00000521817.1_1_8:95272332-95274320:-|nuORF REV__ENST00000521817.1_1_8:95272332-95274320:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2364196777344 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 110.58 1 110.58 110.08 111.08 0 0 0 0 0.21486 1 21748 21748 5.2307 2.3415 1 + 18495 17727 12103 12107 18499 18499 -0.012835877025963782 GVTGRLYR 8 Unmodified _GVTGRLYR_ 0 0 0 nc|ENSG859|P60507|ERVFC1 nc|ENSG859|P60507|ERVFC1 nc|ENSG859|P60507|ERVFC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.52728271484375 2 461.266876 920.519199 NaN NaN NaN NaN NaN NaN NaN 148.61 1 143.55 143.05 144.05 -5.0595 0 0 0 0.21486 1 28786 28786 2.5775 0 1 18496 12670 12104 12108 18500 18500 0.0557602671146924 GVTIQLLLVPL 11 Unmodified _GVTIQLLLVPL_ 0 0 0 REV__nc|ENSG00000204655|Q16653-12|MOG REV__nc|ENSG00000204655|Q16653-12|MOG MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 389.2575988769531 3 389.256675 1164.7482 NaN NaN NaN NaN NaN NaN NaN 56.075 1 52.899 52.399 53.399 -3.1761 0 0 0 0.23698 1 10425 10425 0.45452 0.1855 1 + 18497 19558 12105 12109 18501 18501 0.17241181164854424 GVTISAHCK 9 Unmodified _GVTISAHCK_ 0 0 0 ENST00000504216.5_1_4:103822276-103853306:-|nuORF ENST00000504216.5_1_4:103822276-103853306:-|nuORF ENST00000504216.5_1_4:103822276-103853306:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2386169433594 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 170.73 1 165.82 165.32 166.32 -4.9149 0 0 0 0.23508 1 33770 33770 7.9102 0.62092 1 18498 10652 12106 12110 18502 18502 0.003732718485252917 GVTISAHCK 9 Unmodified _GVTISAHCK_ 0 0 0 ENST00000504216.5_1_4:103822276-103853306:-|nuORF ENST00000504216.5_1_4:103822276-103853306:-|nuORF ENST00000504216.5_1_4:103822276-103853306:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23046875 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 97.085 1 93.165 92.665 93.665 -3.9194 0 0 0 0.19638 1 18633 18633 0.40827 0.2854 1 18499 10652 12106 12110 18503 18503 0.003732718485252917 GVTISAHCK 9 Unmodified _GVTISAHCK_ 0 0 0 ENST00000504216.5_1_4:103822276-103853306:-|nuORF ENST00000504216.5_1_4:103822276-103853306:-|nuORF ENST00000504216.5_1_4:103822276-103853306:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23828125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 141.93 1 137.07 136.57 137.57 -4.8678 0 0 0 0.23508 1 27385 27385 11.64 2.2929 1 18500 10652 12106 12110 18504 18504 0.003732718485252917 GVTKFSGMVLL 11 Unmodified _GVTKFSGMVLL_ 0 0 0 ENST00000492552.5_1_3:23987629-24018907:+|nuORF;ENSG00000174738|ENST00000312521|NR1D2;ENST00000468700.1_1_3:23996209-24001320:+|nuORF ENST00000492552.5_1_3:23987629-24018907:+|nuORF ENST00000492552.5_1_3:23987629-24018907:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3245849609375 2 576.328285 1150.64202 NaN NaN NaN NaN NaN NaN NaN 120.46 1 115.99 115.49 116.49 -4.467 0 0 0 0.22595 1 23194 23194 11.495 3.3392 1 18501 6365 12107 12111 18505 18505 0.07272102327897301 GVTKKRRR 8 Unmodified _GVTKKRRR_ 0 0 0 REV__ENST00000428417.5_1_1:15546837-15546969:+|nuORF REV__ENST00000428417.5_1_1:15546837-15546969:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 334.1481018066406 3 334.22107 999.64138 NaN NaN NaN NaN NaN NaN NaN 84.79 1 80.88 80.38 81.38 -3.9093 0 0 0 0.21486 1 16120 16120 0.45834 0 1 + 18502 21589 12108 12112 18506 18506 0.1415448851370229 GVTKLFIKK 9 Unmodified _GVTKLFIKK_ 0 0 0 REV__ENST00000326448.11_1_3:160117054-160117270:-|nuORF REV__ENST00000326448.11_1_3:160117054-160117270:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.2314453125 3 345.23046 1032.66955 NaN NaN NaN NaN NaN NaN NaN 37.885 1 35.416 34.916 35.916 -2.4688 0 0 0 0.23508 1 7006 7006 0.26902 0.033176 1 + 18503 20582 12109 12113 18507 18507 0.1545237365041885 GVTLFCWM 8 Unmodified _GVTLFCWM_ 0 0 0 REV__ENST00000467128.5_1_2:61441304-61441779:-|nuORF REV__ENST00000467128.5_1_2:61441304-61441779:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7216491699219 2 478.722067 955.429581 NaN NaN NaN NaN NaN NaN NaN 16.462 1 15.246 14.746 15.746 -1.2159 0 0 0 0.21486 1 2592 2592 5.7604 0 1 + 18504 21429 12110 12114 18508 18508 -0.04991687283779811 GVTLGQPH 8 Unmodified _GVTLGQPH_ 0 0 0 ENST00000487075.1_1_X:24073085-24080702:+|nuORF;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3 ENST00000487075.1_1_X:24073085-24080702:+|nuORF ENST00000487075.1_1_X:24073085-24080702:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.29962158203125 2 404.719227 807.423902 -0.35333 -0.000143 0.49639 0.0002009 0.14307 5.7903E-05 404.7192873234079 17.769 0.27314 16.458 16.307 16.58 -1.3109 15 7 3 0 0 0 1.0095 1 2838 2838 10.183 0.83596 1 1176300 18505 929 12111 12115 18509 18509 0.012486735204220167 GVTLGQPH 8 Unmodified _GVTLGQPH_ 0 0 0 ENST00000487075.1_1_X:24073085-24080702:+|nuORF;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3 ENST00000487075.1_1_X:24073085-24080702:+|nuORF ENST00000487075.1_1_X:24073085-24080702:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 404.719227 807.423902 -0.087675 -3.5484E-05 -0.061844 -2.5029E-05 -0.14952 -6.0513E-05 404.71917604102384 16.603 0.34132 16.603 16.405 16.746 0 0.092921 -0.00020384 NaN 10.183 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1192600 18506 929 12111 12115 0.012486735204220167 GVTLGQPH 8 Unmodified _GVTLGQPH_ 0 0 0 ENST00000487075.1_1_X:24073085-24080702:+|nuORF;EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3 ENST00000487075.1_1_X:24073085-24080702:+|nuORF ENST00000487075.1_1_X:24073085-24080702:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 404.719227 807.423902 -0.44046 -0.00017826 0.23063 9.3341E-05 -0.20983 -8.4923E-05 404.7193039692417 17.741 0.27266 16.469 16.283 16.556 -1.2722 -0.040996 3.2904E-05 NaN 10.183 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1070300 18507 929 12111 12115 0.012486735204220167 GVTLPIMWFY 10 Unmodified _GVTLPIMWFY_ 0 0 0 nc|ENSG00000205060|Q969S0-3|SLC35B4;ENSG00000205060|ENST00000378509|SLC35B4 nc|ENSG00000205060|Q969S0-3|SLC35B4 nc|ENSG00000205060|Q969S0-3|SLC35B4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.9480285644531 4 307.412415 1225.62055 -0.56231 -0.00017286 0.47022 0.00014455 -0.092098 -2.8312E-05 307.4124631203014 16.798 0.1019 16.798 16.714 16.816 0 4 2 2 0 0 0 0.91149 1 2631 2631 0.15932 0 1 135990 18508 7628 12112 12116 18510 18510 0.016767172991649204 GVTLPQIELPL 11 Unmodified _GVTLPQIELPL_ 0 0 0 REV__GRIN2C|p.K133Rfs*59|1|0.48|ENSG00000161509|chr17:74854697-74854697|G/-|frameshift_variant REV__GRIN2C|p.K133Rfs*59|1|0.48|ENSG00000161509|chr17:74854697-74854697|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2545776367188 2 590.352814 1178.69108 NaN NaN NaN NaN NaN NaN NaN 147.76 1 147.76 147.26 148.26 0 0 0 0 0.23018 1 29558 29558 8.1555 0.8663 1 + 18509 17458 12113 12117 18511 18511 0.10887713888473627 GVTLRHCPY 9 Unmodified _GVTLRHCPY_ 0 0 0 REV__ENSG00000185104|ENST00000396153|FAF1 REV__ENSG00000185104|ENST00000396153|FAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26953125 2 523.266019 1044.51748 0.60982 0.0003191 1.5974 0.00083587 2.2072 0.001155 523.2670052746508 23.357 0.98446 21.804 20.991 21.976 -1.5532 23 9 3 0 0 0 0.66537 1 3980 3980 8.5933 0.68312 1 5677300 + 18510 18942 12114 12118 18512 18512 -0.0029935036880033294 GVTLRKFKRR 10 Unmodified _GVTLRKFKRR_ 0 0 0 ACVR1|p.A145T|1|0.19|ENSG00000115170|chr2:157778241-157778241|C/T|missense_variant ACVR1|p.A145T|1|0.19|ENSG00000115170|chr2:157778241-157778241|C/T|missense_variant ACVR1|p.A145T|1|0.19|ENSG00000115170|chr2:157778241-157778241|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7659912109375 2 630.904205 1259.79386 NaN NaN NaN NaN NaN NaN NaN 98.417 1 94.285 93.785 94.785 -4.1326 0 0 0 2.8426 1 19326 19326 0.043787 0 1 18511 48 12115 12119 18513 18513 0.17435264190430644 GVTLSRQPG 9 Unmodified _GVTLSRQPG_ 0 0 0 ENST00000478440.1_1_2:182322968-182343489:+|nuORF;ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ITGA4|p.T615Nfs*11|1|0.22|ENSG00000115232|chr2:181509798-181509799|-/A|frameshift_variant;ENSG00000115232|ENST00000397033|ITGA4 ENST00000478440.1_1_2:182322968-182343489:+|nuORF ENST00000478440.1_1_2:182322968-182343489:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2377014160156 2 457.756341 913.498129 NaN NaN NaN NaN NaN NaN NaN 37.829 1 35.481 34.981 35.981 -2.3479 0 0 0 0.21848 1 6714 6714 18.135 5.6034 1 18512 2832 12116 12120 18514 18514 0.03792016611953386 GVTMGDMY 8 Unmodified _GVTMGDMY_ 0 0 0 REV__ENSG00000077942|ENST00000327858|FBLN1 REV__ENSG00000077942|ENST00000327858|FBLN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2162170410156 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 129.61 1 124.79 124.29 125.29 -4.817 0 0 0 0.21486 1 24882 24882 10.183 0 1 + + 18513 13505 12117 12121 18515 18515 -0.10045147314087899 GVTNMQSLP 9 Unmodified _GVTNMQSLP_ 0 0 0 ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1752014160156 3 316.160265 945.458967 NaN NaN NaN NaN NaN NaN NaN 152.06 1 146.83 146.33 147.33 -5.2365 0 0 0 0.23508 1 29480 29480 2.7352 0 1 18514 5118 12118 12122 18516 18516 -0.015944517339335107 GVTNMQSLP 9 Unmodified _GVTNMQSLP_ 0 0 0 ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.16510009765625 3 316.160265 945.458967 NaN NaN NaN NaN NaN NaN NaN 156.88 1 151.59 151.09 152.09 -5.2854 0 0 0 0.23508 1 30439 30439 2.7352 0 1 18515 5118 12118 12122 18517 18517 -0.015944517339335107 GVTPEAWAQ 9 Unmodified _GVTPEAWAQ_ 0 0 0 nc|ENSG00000147804|Q6P5W5-2|SLC39A4;ENSG00000147804|ENST00000301305|SLC39A4 nc|ENSG00000147804|Q6P5W5-2|SLC39A4 nc|ENSG00000147804|Q6P5W5-2|SLC39A4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.1590576171875 3 320.159142 957.455596 NaN NaN NaN NaN NaN NaN NaN 44.508 1 41.742 41.242 42.242 -2.7661 0 0 0 0.23508 1 8059 8059 1.0715 0 1 18516 4717 12119 12123 18518 18518 -0.024833785162968525 GVTPIVTLY 9 Unmodified _GVTPIVTLY_ 0 0 0 nc|ENSG00000249948|Q9H227|GBA3 nc|ENSG00000249948|Q9H227|GBA3 nc|ENSG00000249948|Q9H227|GBA3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78240966796875 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 153.18 1 148.41 147.91 148.91 -4.7684 0 0 0 0.19634 1 30439 30439 0.073264 0.064987 1 18517 12625 12120 12124 18519 18519 0.06612126217089553 GVTPRTPPP 9 Unmodified _GVTPRTPPP_ 0 0 0 REV__ENST00000577142.1_1_17:79650493-79650807:-|nuORF REV__ENST00000577142.1_1_17:79650493-79650807:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5406494140625 2 461.261259 920.507966 0.096413 4.4472E-05 -0.41594 -0.00019186 -0.31953 -0.00014738 461.26107042712636 58.725 0.48824 55.52 55.299 55.787 -3.2052 22 13 2 0 0 0 0.72864 1 10934 10934 11.64 0.81637 1 596430 + 18518 13121 12121 12125 18520 18520 0.04453204617323081 GVTPTSPWEI 10 Unmodified _GVTPTSPWEI_ 0 0 0 REV__ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant REV__ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7783813476562 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 165.49 1 160.7 160.2 161.2 -4.7898 0 0 0 2.8426 1 33146 33146 0.0013812 0 1 + 18519 12912 12122 12126 18521 18521 -2.2671392343909247E-05 GVTPVAWW 8 Unmodified _GVTPVAWW_ 0 0 0 TRIM73|p.G199Vfs*80|1|0.12|ENSG00000178809|chr7:75404935-75404935|G/-|frameshift_variant TRIM73|p.G199Vfs*80|1|0.12|ENSG00000178809|chr7:75404935-75404935|G/-|frameshift_variant TRIM73|p.G199Vfs*80|1|0.12|ENSG00000178809|chr7:75404935-75404935|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23883056640625 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 156.72 1 156.72 156.22 157.22 0 0 0 0 0.21323 1 31443 31443 14.582 1.0738 1 18520 26521 12123 12127 18522 18522 0.004384345598964501 GVTPVAWW 8 Unmodified _GVTPVAWW_ 0 0 0 TRIM73|p.G199Vfs*80|1|0.12|ENSG00000178809|chr7:75404935-75404935|G/-|frameshift_variant TRIM73|p.G199Vfs*80|1|0.12|ENSG00000178809|chr7:75404935-75404935|G/-|frameshift_variant TRIM73|p.G199Vfs*80|1|0.12|ENSG00000178809|chr7:75404935-75404935|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2403259277344 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 158.33 1 158.33 157.83 158.83 0 0 0 0 0.21486 1 31790 31790 9.3474 2.9933 1 18521 26521 12123 12127 18523 18523 0.004384345598964501 GVTQSQPP 8 Unmodified _GVTQSQPP_ 0 0 0 REV__RINT1|p.L275*|1|0.08|ENSG00000135249|chr7:105547315-105547315|T/-|frameshift_variant REV__RINT1|p.L275*|1|0.08|ENSG00000135249|chr7:105547315-105547315|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 407.6930236816406 2 407.208692 812.402832 -0.27287 -0.00011112 0.37707 0.00015354 0.10419 4.2428E-05 407.2087208722641 43.348 0.64577 40.629 40.408 41.053 -2.7191 23 17 2 0 0 0 8448 1 8184 8184 0.62683 0 1 2325300 + 18522 16252 12124 12128 18524 18524 -0.010873365790871503 GVTQSQPP 8 Unmodified _GVTQSQPP_ 0 0 0 REV__RINT1|p.L275*|1|0.08|ENSG00000135249|chr7:105547315-105547315|T/-|frameshift_variant REV__RINT1|p.L275*|1|0.08|ENSG00000135249|chr7:105547315-105547315|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 407.208692 812.402832 -0.27287 -0.00011112 0.37707 0.00015354 0.10419 4.2428E-05 407.2087208722641 43.348 0.64577 40.629 40.408 41.053 -2.7191 0.059192 5.0444E-05 NaN 0.62683 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2325300 + 18523 16252 12124 12128 -0.010873365790871503 GVTQSQPP 8 Unmodified _GVTQSQPP_ 0 0 0 REV__RINT1|p.L275*|1|0.08|ENSG00000135249|chr7:105547315-105547315|T/-|frameshift_variant REV__RINT1|p.L275*|1|0.08|ENSG00000135249|chr7:105547315-105547315|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 407.208692 812.402832 -0.064388 -2.6219E-05 0.21688 8.8315E-05 0.15249 6.2096E-05 407.20865227896115 43.276 0.5129 40.51 40.427 40.94 -2.7661 -0.059192 -8.0015E-05 NaN 0.62683 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1891500 + 18524 16252 12124 12128 -0.010873365790871503 GVTRCMPCER 10 Unmodified _GVTRCMPCER_ 0 0 0 REV__ENSG00000139946|ENST00000267460|PELI2 REV__ENSG00000139946|ENST00000267460|PELI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3236083984375 2 576.259553 1150.50455 NaN NaN NaN NaN NaN NaN NaN 122.09 1 117.56 117.06 118.06 -4.5305 0 0 0 0.22588 1 23504 23504 6.2058 1.3088 1 + 18525 16553 12125 12129 18525 18525 -0.06467872814869224 GVTREEQP 8 Unmodified _GVTREEQP_ 0 0 0 REV__AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant REV__AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2294616699219 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 152.45 1 147.27 146.77 147.77 -5.1759 0 0 0 0.23749 1 29547 29547 0.12286 0 1 + 18526 13035 12126 12130 18526 18526 -0.0148856652166387 GVTRLTFEY 9 Unmodified _GVTRLTFEY_ 0 0 0 nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78564453125 2 543.284931 1084.55531 0.16397 8.9081E-05 -1.7463 -0.00094872 -1.5823 -0.00085964 543.7852563431114 153.18 0.16916 147.91 147.81 147.98 -5.2669 6 4 2 0 0 0 0.62102 1 29692 29692 11.64 1.4569 1 1404400 18527 3188 12127 12131 18527 18527 0.016414390976706272 GVTSAKRI 8 Unmodified _GVTSAKRI_ 0 0 0 tr|U7STZ8|U7STZ8_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01045PE=4SV=1 tr|U7STZ8|U7STZ8_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01045PE=4SV=1 tr|U7STZ8|U7STZ8_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01045PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 416.2575988769531 2 416.255977 830.497401 NaN NaN NaN NaN NaN NaN NaN 65.67 1 62.212 61.712 62.712 -3.4581 0 0 0 0.21486 1 12294 12294 9.3474 0 1 18528 26178 12128 12132 18528 18528 0.07537221962900276 GVTSLMSLLH 10 Unmodified _GVTSLMSLLH_ 0 0 0 REV__ENST00000263026.9_1_16:22296162-22296357:+|nuORF REV__ENST00000263026.9_1_16:22296162-22296357:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.1787109375 3 353.195198 1056.56377 NaN NaN NaN NaN NaN NaN NaN 111.04 1 106.81 106.31 107.31 -4.2289 0 0 0 0.22588 1 21369 21369 0.77653 0.078866 1 + 18529 20203 12129 12133 18529 18529 0.037746697426428 GVTSQFISKKG 11 Unmodified _GVTSQFISKKG_ 0 0 0 ENST00000535985.1_1_11:71944736-71950103:+|nuORF;INPPL1|p.P977Tfs*7|1|0.5|ENSG00000165458|chr11:72237164-72237165|-/C|frameshift_variant;nc|ENSG00000165458|O15357-2|INPPL1;INPPL1|p.P976Hfs*155|1|0.31|ENSG00000165458|chr11:72237165-72237165|C/-|frameshift_variant;INPPL1|p.R1156Gfs*46|2|0.42|ENSG00000165458|chr11:72237704-72237704|C/-|frameshift_variant;ENSG00000165458|ENST00000298229|INPPL1 ENST00000535985.1_1_11:71944736-71950103:+|nuORF ENST00000535985.1_1_11:71944736-71950103:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.326904296875 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 124.46 1 124.46 123.96 124.96 0 0 0 0 0.22632 1 24542 24542 0.094841 0 1 18530 5628 12130 12134 18530 18530 0.06533086051808823 GVTSSHSS 8 Unmodified _GVTSSHSS_ 0 0 0 ENST00000567298.5_2_16:87735234-87735883:-|nuORF ENST00000567298.5_2_16:87735234-87735883:-|nuORF ENST00000567298.5_2_16:87735234-87735883:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21929931640625 2 381.17485 760.335146 NaN NaN NaN NaN NaN NaN NaN 26.291 1 24.509 24.009 25.009 -1.7821 0 0 0 0.2396 1 4636 4636 0 0 1 18531 11382 12131 12135 18531 18531 -0.05460786509888749 GVTSYWPDR 9 Unmodified _GVTSYWPDR_ 0 0 0 REV__ENSG00000142396|ENST00000413518|ERVK3-1 REV__ENSG00000142396|ENST00000413518|ERVK3-1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2605590820312 2 540.759081 1079.50361 0.17208 9.3053E-05 -0.22794 -0.00012326 -0.055861 -3.0207E-05 540.7588899903683 14.266 0.20672 14.266 14.179 14.386 0 8 5 2 0 0 0 0.87888 1 2135 2135 4.756 4.756 1 1603500 + 18532 16668 12132 12136 18532 18532 -0.0329630459625605 GVTTCDPG 8 Unmodified _GVTTCDPG_ 0 0 0 ENSG00000107954|ENST00000369780|NEURL1;nc|ENSG00000107954|O76050-2|NEURL1 ENSG00000107954|ENST00000369780|NEURL1 ENSG00000107954|ENST00000369780|NEURL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2151794433594 2 375.160354 748.306154 NaN NaN NaN NaN NaN NaN NaN 38.22 1 35.778 35.278 36.278 -2.4419 0 0 0 0.21486 1 6795 6795 5.7604 0.52976 1 18533 2451 12133 12137 18533 18533 -0.07806647130541933 GVTTLLSHNLP 11 Unmodified _GVTTLLSHNLP_ 0 0 0 REV__nc|ENSG00000116455|Q9BQA1-2|WDR77 REV__nc|ENSG00000116455|Q9BQA1-2|WDR77 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3251342773438 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 119.01 1 119.01 118.51 119.51 0 0 0 0 0.22421 1 23441 23441 12.873 1.3779 1 + 18534 15481 12134 12138 18534 18534 0.06533086051786086 GVTTLTTLSS 10 Unmodified _GVTTLTTLSS_ 0 0 0 sp|Q6SW46|UL97_HCMVMSerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL97PE=3SV=1;sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1 sp|Q6SW46|UL97_HCMVMSerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL97PE=3SV=1 sp|Q6SW46|UL97_HCMVMSerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL97PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26715087890625 2 490.268947 978.523341 NaN NaN NaN NaN NaN NaN NaN 171.84 1 171.84 171.34 172.34 0 0 0 0 0.22588 1 35435 35435 9.3831 1.473 1 18535 25759 12135 12139 18535 18535 0.033220266238686236 GVTTSLRPP 9 Unmodified _GVTTSLRPP_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant;RYR1|p.P3303Tfs*8|1|0.36|ENSG00000196218|chr19:38517571-38517572|-/C|frameshift_variant nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.1515808105469 2 464.266542 926.51853 0.033481 1.5544E-05 -0.24327 -0.00011294 -0.20979 -9.74E-05 464.26645870744846 78.173 0.8089 74.514 74.024 74.833 -3.6588 31 22 2 0 0 0 0.8319 1 14815 14815 12.532 7.7755 1 1191500 18536 7246 12136 12140 18536 18536 0.05233187271744555 GVTTSLRPP 9 Unmodified _GVTTSLRPP_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant;RYR1|p.P3303Tfs*8|1|0.36|ENSG00000196218|chr19:38517571-38517572|-/C|frameshift_variant nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.266542 926.51853 0.23488 0.00010905 -0.40108 -0.00018621 -0.1662 -7.7163E-05 464.2662549852083 74.228 0.66135 74.228 73.977 74.639 0 -0.12953 -0.00014077 NaN 12.532 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1227700 18537 7246 12136 12140 0.05233187271744555 GVTTSLRPP 9 Unmodified _GVTTSLRPP_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant;RYR1|p.P3303Tfs*8|1|0.36|ENSG00000196218|chr19:38517571-38517572|-/C|frameshift_variant nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.266542 926.51853 -0.069283 -3.2166E-05 -0.047922 -2.2249E-05 -0.11721 -5.4414E-05 464.2663799517179 77.816 0.81348 74.353 73.862 74.676 -3.4633 -0.0048773 0.00018715 NaN 12.532 37 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1403600 18538 7246 12136 12140 0.05233187271744555 GVTTSLRPP 9 Unmodified _GVTTSLRPP_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant;RYR1|p.P3303Tfs*8|1|0.36|ENSG00000196218|chr19:38517571-38517572|-/C|frameshift_variant nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.266542 926.51853 -0.038528 -1.7887E-05 -0.36681 -0.0001703 -0.40534 -0.00018818 464.26631889014715 78.102 0.80583 74.336 73.93 74.736 -3.7664 -0.021936 -0.00010895 NaN 12.532 31 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1450900 18539 7246 12136 12140 0.05233187271744555 GVTTTIKSL 9 Unmodified _GVTTTIKSL_ 0 0 0 REV__ENST00000424545.2_1_20:62337059-62338084:-|nuORF REV__ENST00000424545.2_1_20:62337059-62338084:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2744445800781 2 460.276575 918.538597 NaN NaN NaN NaN NaN NaN NaN 75.274 1 71.551 71.051 72.051 -3.7227 0 0 0 0.23508 1 14236 14236 4.756 0 1 + 18540 13094 12137 12141 18537 18537 0.07606938211711167 GVTTVTTA 8 Unmodified _GVTTVTTA_ 0 0 0 REV__ENSG00000099937|ENST00000215727|SERPIND1 REV__ENSG00000099937|ENST00000215727|SERPIND1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21337890625 2 375.205618 748.396684 NaN NaN NaN NaN NaN NaN NaN 35.612 1 33.359 32.859 33.859 -2.2527 0 0 0 0.2396 1 6279 6279 0 0 1 + 18541 14648 12138 12142 18538 18538 0.012421451893601443 GVTWCLARH 9 Unmodified _GVTWCLARH_ 0 0 0 REV__TUBGCP6|p.E1173Sfs*151|1|0.26|ENSG00000128159|chr22:50220842-50220842|C/-|frameshift_variant REV__TUBGCP6|p.E1173Sfs*151|1|0.26|ENSG00000128159|chr22:50220842-50220842|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2678833007812 2 521.766186 1041.51782 -1.5386 -0.00080277 0.12827 6.6929E-05 -1.4103 -0.00073584 521.7663293806626 15.443 3.2314 14.09 13.507 16.739 -1.3534 185 92 4 0 0 0 0.6171 1 2364 2364 0.40827 0 1 13595000 + 18542 25505 12139 12143 18539 18539 -0.0012793064895504358 GVTYVVKY 8 Unmodified _GVTYVVKY_ 0 0 0 ENSG00000148082|ENST00000375835|SHC3 ENSG00000148082|ENST00000375835|SHC3 ENSG00000148082|ENST00000375835|SHC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.217041015625 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 73.112 1 69.484 68.984 69.984 -3.6275 0 0 0 0.21486 1 13815 13815 7.2892 0.56607 1 18543 4726 12140 12144 18540 18540 0.03991570528569355 GVTYVVKY 8 Unmodified _GVTYVVKY_ 0 0 0 ENSG00000148082|ENST00000375835|SHC3 ENSG00000148082|ENST00000375835|SHC3 ENSG00000148082|ENST00000375835|SHC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1703186035156 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 179.09 1 174.22 173.72 174.72 -4.868 0 0 0 0.21486 1 35662 35662 1.6526 1.1943 1 18544 4726 12140 12144 18541 18541 0.03991570528569355 GVVAATTT 8 Unmodified _GVVAATTT_ 0 0 0 REV__nc|ENSG00000130985|P22314-2|UBA1 REV__nc|ENSG00000130985|P22314-2|UBA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015686035156 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 73.304 1 73.304 72.804 73.804 0 0 0 0 0.21486 1 14225 14225 2.5775 0 1 + 18545 16046 12141 12145 18542 18542 0.01566162534936666 GVVAATTT 8 Unmodified _GVVAATTT_ 0 0 0 REV__nc|ENSG00000130985|P22314-2|UBA1 REV__nc|ENSG00000130985|P22314-2|UBA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20147705078125 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 108.43 1 108.43 107.93 108.93 0 0 0 0 0.21486 1 21323 21323 2.5775 0 1 + 18546 16046 12141 12145 18543 18543 0.01566162534936666 GVVAELQGFA 10 Unmodified _GVVAELQGFA_ 0 0 0 nc|ENSG00000166091|Q96DZ9-4|CMTM5;nc|ENSG00000166091|Q96DZ9-5|CMTM5;nc|ENSG00000166091|Q96DZ9-3|CMTM5;nc|ENSG00000166091|Q96DZ9-6|CMTM5;nc|ENSG00000166091|Q96DZ9-2|CMTM5;CMTM5|p.P126Rfs*55|1|0.17|ENSG00000166091|chr14:23378760-23378760|C/-|frameshift_variant;ENSG00000166091|ENST00000339180|CMTM5 nc|ENSG00000166091|Q96DZ9-4|CMTM5 nc|ENSG00000166091|Q96DZ9-4|CMTM5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 331.0416564941406 3 330.846675 989.518196 -0.76235 -0.00025222 0.84832 0.00028066 0.085968 2.8442E-05 330.84702061070595 44.316 0.34825 41.568 41.361 41.709 -2.7475 11 9 2 0 0 0 0.91149 1 7991 7991 0.77653 0.61721 1 513890 18547 591 12142 12146 18544 18544 0.023017675518985925 GVVAELQGFA 10 Unmodified _GVVAELQGFA_ 0 0 0 nc|ENSG00000166091|Q96DZ9-4|CMTM5;nc|ENSG00000166091|Q96DZ9-5|CMTM5;nc|ENSG00000166091|Q96DZ9-3|CMTM5;nc|ENSG00000166091|Q96DZ9-6|CMTM5;nc|ENSG00000166091|Q96DZ9-2|CMTM5;CMTM5|p.P126Rfs*55|1|0.17|ENSG00000166091|chr14:23378760-23378760|C/-|frameshift_variant;ENSG00000166091|ENST00000339180|CMTM5 nc|ENSG00000166091|Q96DZ9-4|CMTM5 nc|ENSG00000166091|Q96DZ9-4|CMTM5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 330.846675 989.518196 -0.32233 -0.00010664 0.79644 0.0002635 0.47411 0.00015686 330.8468442811107 44.302 0.41818 41.512 41.327 41.745 -2.79 -0.028303 -2.5889E-05 NaN 0.77653 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 588140 18548 591 12142 12146 0.023017675518985925 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1652526855469 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 64.778 1 64.778 64.278 65.278 0 0 0 0 0.19638 1 12473 12473 0.073264 0 1 + 18549 14902 12143 12147 18545 18545 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1598815917969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 73.1 1 73.1 72.6 73.6 0 0 0 0 0.23508 1 14188 14188 1.1933 0 1 + 18550 14902 12143 12147 18546 18546 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 81.791 1 81.791 81.291 82.291 0 0 0 0 0.23508 1 15934 15934 1.1933 0.12188 1 + 18551 14902 12143 12147 18547 18547 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1646728515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 14.75 1 13.635 13.135 14.135 -1.1142 0 0 0 0.23508 1 2231 2231 1.1933 0 1 + 18552 14902 12143 12147 18548 18548 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1646728515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 57.698 1 54.797 54.297 55.297 -2.9018 0 0 0 0.1964 1 11071 11071 0.40827 0.34428 1 + 18553 14902 12143 12147 18549 18549 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 63.153 1 60.155 59.655 60.655 -2.9975 0 0 0 0.23508 1 12195 12195 5.7319 2.7366 1 + 18554 14902 12143 12147 18550 18550 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.21221923828125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 66.282 1 63.235 62.735 63.735 -3.047 0 0 0 0.23508 1 12840 12840 5.7319 1.7875 1 + 18555 14902 12143 12147 18551 18551 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1646728515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 79.81 1 76.299 75.799 76.799 -3.5102 0 0 0 0.19665 1 15587 15587 0.40827 0.2854 1 + 18556 14902 12143 12147 18552 18552 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 60.355 1 57.042 56.542 57.542 -3.3139 0 0 0 0.1964 1 11239 11239 0.40827 0.34428 1 + 18557 14902 12143 12147 18553 18553 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.20697021484375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 62.754 1 59.338 58.838 59.838 -3.4158 0 0 0 0.23508 1 11719 11719 2.9952 1.151 1 + 18558 14902 12143 12147 18554 18554 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 77.237 1 73.471 72.971 73.971 -3.7664 0 0 0 0.1964 1 14632 14632 0.073264 0 1 + 18559 14902 12143 12147 18555 18555 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 77.53 1 73.764 73.264 74.264 -3.7664 0 0 0 0.23508 1 14689 14689 1.1933 0.12188 1 + 18560 14902 12143 12147 18556 18556 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1522521972656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 88.838 1 84.843 84.343 85.343 -3.9953 0 0 0 0.23508 1 16928 16928 2.9952 1.151 1 + 18561 14902 12143 12147 18557 18557 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 95.473 1 91.282 90.782 91.782 -4.1911 0 0 0 0.23508 1 18220 18220 1.1933 0.12188 1 + 18562 14902 12143 12147 18558 18558 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 100.12 1 95.825 95.325 96.325 -4.297 0 0 0 0.23508 1 19145 19145 1.1933 0.12188 1 + 18563 14902 12143 12147 18559 18559 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1708984375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 105.44 1 101.06 100.56 101.56 -4.3764 0 0 0 0.23508 1 20212 20212 1.1933 0.12188 1 + 18564 14902 12143 12147 18560 18560 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 58.222 1 55.017 54.517 55.517 -3.2052 0 0 0 0.1964 1 10862 10862 0.40827 0.34428 1 + 18565 14902 12143 12147 18561 18561 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 66.917 1 63.59 63.09 64.09 -3.3268 0 0 0 0.23508 1 12608 12608 1.1933 0.12188 1 + 18566 14902 12143 12147 18562 18562 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16473388671875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.41 1 71.776 71.276 72.276 -3.6337 0 0 0 0.1964 1 14333 14333 0.073264 0 1 + 18567 14902 12143 12147 18563 18563 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1652526855469 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 77.257 1 73.598 73.098 74.098 -3.6588 0 0 0 0.19665 1 14707 14707 0.40827 0 1 + 18568 14902 12143 12147 18564 18564 0.003546936318457483 GVVAEYPPP 9 Unmodified _GVVAEYPPP_ 0 0 0 REV__ENSG00000104059|ENST00000261275|ENTREP2 REV__ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 77.484 1 73.825 73.325 74.325 -3.6588 0 0 0 0.23508 1 14753 14753 1.1933 0.12188 1 + 18569 14902 12143 12147 18565 18565 0.003546936318457483 GVVAFLCLTG 10 Unmodified _GVVAFLCLTG_ 0 0 0 SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant;nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG;SPEG|p.S1915Vfs*324|1|0.21|ENSG00000072195|chr2:219483200-219483200|C/-|frameshift_variant;SPEG|p.Q2233Rfs*6|2|0.25|ENSG00000072195|chr2:219484154-219484154|C/-|frameshift_variant;SPEG|p.M1971Wfs*268|1|0.31|ENSG00000072195|chr2:219483369-219483369|C/-|frameshift_variant;SPEG|p.R2315Qfs*8|1|0.31|ENSG00000072195|chr2:219484399-219484400|-/C|frameshift_variant;SPEG|p.P2584Qfs*35|1|0.09|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2677917480469 2 490.267696 978.520839 NaN NaN NaN NaN NaN NaN NaN 88.815 1 84.82 84.32 85.32 -3.9953 0 0 0 2.8426 1 16924 16924 0.69767 0 1 18570 1461 12144 12148 18566 18566 0.03071899685187418 GVVASLRF 8 Unmodified _GVVASLRF_ 0 0 0 ENSG00000138615|ENST00000261883|CILP ENSG00000138615|ENST00000261883|CILP ENSG00000138615|ENST00000261883|CILP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25518798828125 2 424.75307 847.491587 -0.23153 -9.8345E-05 0.45188 0.00019194 0.22034 9.3592E-05 424.75318813872997 67.131 0.63975 67.131 66.8 67.44 0 28 17 2 0 0 0 0.27274 2 12958 12958;13009 38.151 4.6271 1 1683800 18571 4187 12145 12149 18567;18568 18567 0.06174123451239666 GVVASLRF 8 Unmodified _GVVASLRF_ 0 0 0 ENSG00000138615|ENST00000261883|CILP ENSG00000138615|ENST00000261883|CILP ENSG00000138615|ENST00000261883|CILP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2547912597656 2 424.75307 847.491587 -0.25632 -0.00010887 0.70861 0.00030098 0.45229 0.00019211 424.75326308431426 70.222 0.63531 66.973 66.615 67.25 -3.2492 29 17 2 0 0 0 0.56049 2 13647 13647;13707 24.674 6.5389 1 2098800 18572 4187 12145 12149 18569;18570 18569 0.06174123451239666 GVVASLRF 8 Unmodified _GVVASLRF_ 0 0 0 ENSG00000138615|ENST00000261883|CILP ENSG00000138615|ENST00000261883|CILP ENSG00000138615|ENST00000261883|CILP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2543029785156 2 424.75307 847.491587 0.3399 0.00014437 -0.064207 -2.7272E-05 0.27569 0.0001171 424.7529518766011 70.508 0.57025 66.928 66.66 67.23 -3.5798 27 15 2 0 0 0 0.56049 1 13267 13267 24.674 6.5389 1 1312400 18573 4187 12145 12149 18571 18571 0.06174123451239666 GVVASLRF 8 Unmodified _GVVASLRF_ 0 0 0 ENSG00000138615|ENST00000261883|CILP ENSG00000138615|ENST00000261883|CILP ENSG00000138615|ENST00000261883|CILP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2548522949219 2 424.75307 847.491587 0.069355 2.9459E-05 0.2593 0.00011014 0.32866 0.0001396 424.7531286862716 70.334 0.66639 66.867 66.603 67.269 -3.467 34 18 2 0 0 0 0.66265 2 13316 13316;13364 18.135 0 1 1440300 18574 4187 12145 12149 18572;18573 18572 0.06174123451239666 GVVAVRVLLLL 11 Unmodified _GVVAVRVLLLL_ 0 0 0 REV__FOLR1|p.W15R|1|0.31|ENSG00000110195|chr11:72192216-72192216|T/C|missense_variant REV__FOLR1|p.W15R|1|0.31|ENSG00000110195|chr11:72192216-72192216|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3251342773438 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 149.21 1 149.21 148.71 149.71 0 0 0 0 0.23698 1 29870 29870 1.4819 0.15237 1 + 18575 23546 12146 12150 18574 18574 0.21080593638657774 GVVAVRVLLLL 11 Unmodified _GVVAVRVLLLL_ 0 0 0 REV__FOLR1|p.W15R|1|0.31|ENSG00000110195|chr11:72192216-72192216|T/C|missense_variant REV__FOLR1|p.W15R|1|0.31|ENSG00000110195|chr11:72192216-72192216|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3267211914062 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 152.92 1 152.92 152.42 153.42 0 0 0 0 0.23698 1 30635 30635 1.4819 0.15237 1 + 18576 23546 12146 12150 18575 18575 0.21080593638657774 GVVFAPAT 8 Unmodified _GVVFAPAT_ 0 0 0 tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2133483886719 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 51.396 1 48.351 47.851 48.851 -3.0453 0 0 0 0.23711 1 9438 9438 0.0082765 0.0082765 1 18577 26315 12147 12151 18576 18576 0.022150567772200702 GVVFLFGKVW 10 Unmodified _GVVFLFGKVW_ 0 0 0 nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant nc|ENSG00000101868|P09884|POLA1 nc|ENSG00000101868|P09884|POLA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3236083984375 2 576.334227 1150.6539 NaN NaN NaN NaN NaN NaN NaN 30.823 1 28.797 28.297 29.297 -2.0264 0 0 0 2.8426 1 5299 5299 0 0 1 18578 2091 12148 12152 18577 18577 0.08460087133380512 GVVFNVFF 8 Unmodified _GVVFNVFF_ 0 0 0 REV__ENSG00000171747|ENST00000307751|LGALS4 REV__ENSG00000171747|ENST00000307751|LGALS4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 20.659 1 20.659 20.159 21.159 0 0 0 0 0.21486 1 3427 3427 1.8442 0 1 + 18579 18245 12149 12153 18578 18578 0.018796052197103563 GVVFNVFF 8 Unmodified _GVVFNVFF_ 0 0 0 REV__ENSG00000171747|ENST00000307751|LGALS4 REV__ENSG00000171747|ENST00000307751|LGALS4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16473388671875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 55.761 1 55.761 55.261 56.261 0 0 0 0 0.21486 1 10648 10648 1.8442 0.19162 1 + 18580 18245 12149 12153 18579 18579 0.018796052197103563 GVVHIKQH 8 Unmodified _GVVHIKQH_ 0 0 0 REV__ZNF667|p.N263Rfs*52|1|0.28|ENSG00000198046|chr19:56442204-56442207|TGAT/-|frameshift_variant REV__ZNF667|p.N263Rfs*52|1|0.28|ENSG00000198046|chr19:56442204-56442207|TGAT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.53546142578125 3 306.515371 916.524284 NaN NaN NaN NaN NaN NaN NaN 31.783 1 31.783 31.283 32.283 0 0 0 0 0.21486 1 5751 5751 0.45834 0 1 + 18581 19386 12150 12154 18580 18580 0.06268330574073389 GVVHLVLH 8 Unmodified _GVVHLVLH_ 0 0 0 RNF213|p.R4647H|1|0.37|ENSG00000173821|chr17:80381689-80381689|G/A|missense_variant RNF213|p.R4647H|1|0.37|ENSG00000173821|chr17:80381689-80381689|G/A|missense_variant RNF213|p.R4647H|1|0.37|ENSG00000173821|chr17:80381689-80381689|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2157287597656 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 14.029 1 12.818 12.318 13.318 -1.2106 0 0 0 0.21486 1 1826 1826 2.8892 2.0956 1 18582 25616 12151 12155 18581 18581 0.08186116205160943 GVVHPRRV 8 Unmodified _GVVHPRRV_ 0 0 0 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.1029052734375 3 307.190999 918.551168 NaN NaN NaN NaN NaN NaN NaN 39.544 1 39.544 39.044 40.044 0 0 0 0 0.21486 1 7343 7343 0.45834 0.057624 1 + 18583 23948 12152 12156 18582 18582 0.08863439185267907 GVVHPRRV 8 Unmodified _GVVHPRRV_ 0 0 0 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2423095703125 2 460.28286 918.551168 NaN NaN NaN NaN NaN NaN NaN 106.14 1 101.88 101.38 102.38 -4.2638 0 0 0 0.2396 1 20891 20891 0 0 1 + 18584 23948 12152 12156 18583 18583 0.08863439185267907 GVVHPRRV 8 Unmodified _GVVHPRRV_ 0 0 0 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 307.23236083984375 3 307.190999 918.551168 NaN NaN NaN NaN NaN NaN NaN 15.872 1 14.65 14.15 15.15 -1.2219 0 0 0 0.21486 1 2252 2252 0.45834 0 1 + 18585 23948 12152 12156 18584 18584 0.08863439185267907 GVVHPRRV 8 Unmodified _GVVHPRRV_ 0 0 0 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2297668457031 2 460.28286 918.551168 NaN NaN NaN NaN NaN NaN NaN 178.97 1 174.1 173.6 174.6 -4.8686 0 0 0 0.21486 1 35635 35635 0.79363 0.10326 1 + 18586 23948 12152 12156 18585 18585 0.08863439185267907 GVVHPRRV 8 Unmodified _GVVHPRRV_ 0 0 0 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 307.1778869628906 3 307.190999 918.551168 NaN NaN NaN NaN NaN NaN NaN 21.743 1 20.022 19.522 20.522 -1.7211 0 0 0 0.21486 1 3416 3416 0.45834 0 1 + 18587 23948 12152 12156 18586 18586 0.08863439185267907 GVVHPRRV 8 Unmodified _GVVHPRRV_ 0 0 0 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 307.22589111328125 3 307.190999 918.551168 NaN NaN NaN NaN NaN NaN NaN 22.643 1 20.854 20.354 21.354 -1.7886 0 0 0 0.21486 1 3604 3604 0.45834 0 1 + 18588 23948 12152 12156 18587 18587 0.08863439185267907 GVVHPRRV 8 Unmodified _GVVHPRRV_ 0 0 0 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 REV__nc|ENSG00000072518|Q7KZI7-15|MARK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 307.1943664550781 3 307.190999 918.551168 NaN NaN NaN NaN NaN NaN NaN 78.111 1 74.452 73.952 74.952 -3.6588 0 0 0 0.21486 1 14879 14879 0.45834 0.45834 1 + 18589 23948 12152 12156 18588 18588 0.08863439185267907 GVVKLLVLTH 10 Unmodified _GVVKLLVLTH_ 0 0 0 ENSG00000154237|ENST00000388948|LRRK1;LRRK1|p.G177R|1|0.09|ENSG00000154237|chr15:100988729-100988729|G/A|missense_variant;nc|ENSG00000154237|Q38SD2-2|LRRK1 ENSG00000154237|ENST00000388948|LRRK1 ENSG00000154237|ENST00000388948|LRRK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2132263183594 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 4.4407 1 3.4007 2.9007 3.9007 -1.04 0 0 0 0.22588 1 94 94 0.77653 0 1 18590 5001 12153 12157 18589 18589 0.15527758679127146 GVVKRIIPAV 10 Unmodified _GVVKRIIPAV_ 0 0 0 nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3 nc|ENSG00000144744|Q8TBC4-2|UBA3 nc|ENSG00000144744|Q8TBC4-2|UBA3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.2316589355469 3 351.237726 1050.69135 NaN NaN NaN NaN NaN NaN NaN 30.123 1 28.006 27.506 28.506 -2.1167 0 0 0 0.22588 1 5431 5431 0.15932 0 1 18591 4576 12154 12158 18590 18590 0.168031783989818 GVVKRIIPAV 10 Unmodified _GVVKRIIPAV_ 0 0 0 nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3 nc|ENSG00000144744|Q8TBC4-2|UBA3 nc|ENSG00000144744|Q8TBC4-2|UBA3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.18414306640625 3 351.237726 1050.69135 NaN NaN NaN NaN NaN NaN NaN 17.456 1 16.184 15.684 16.684 -1.2722 0 0 0 2.8426 1 2572 2572 0 0 1 18592 4576 12154 12158 18591 18591 0.168031783989818 GVVLGIQDDPK 11 Unmodified _GVVLGIQDDPK_ 0 0 0 ENSG00000170836|ENST00000305921|PPM1D;PPM1D|p.M349Nfs*19|1|0.3|ENSG00000170836|chr17:60656622-60656623|-/A|frameshift_variant;nc|ENSG00000170836|O15297-2|PPM1D ENSG00000170836|ENST00000305921|PPM1D ENSG00000170836|ENST00000305921|PPM1D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2139892578125 3 380.880156 1139.61864 -2.2829 -0.00086953 0.041921 1.5967E-05 -2.241 -0.00085356 380.8801092354085 13.684 0.23406 12.474 12.342 12.576 -1.2106 14 6 3 0 0 0 0.806 1 1772 1772 2.8433 0.10809 1 510410 18593 6100 12155 12159 18592 18592 0.05441379814874381 GVVLRQYLF 9 Unmodified _GVVLRQYLF_ 0 0 0 REV__ENSG00000003056|ENST00000000412|M6PR REV__ENSG00000003056|ENST00000000412|M6PR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7874145507812 2 547.821484 1093.62842 NaN NaN NaN NaN NaN NaN NaN 57.264 1 54.088 53.588 54.588 -3.1761 0 0 0 0.19632 1 10673 10673 0.073264 0.059453 1 + 18594 13825 12156 12160 18593 18593 0.08534612610924341 GVVMLHSS 8 Unmodified _GVVMLHSS_ 0 0 0 REV__ENSG00000162727|ENST00000366476|OR2M5 REV__ENSG00000162727|ENST00000366476|OR2M5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.2535705566406 2 415.215463 828.416374 NaN NaN NaN NaN NaN NaN NaN 16.858 1 15.504 15.004 16.004 -1.3534 0 0 0 0.21486 1 2413 2413 2.8892 0.31174 1 + 18595 17525 12157 12161 18594 18594 -0.0046980207149545095 GVVPHPFPLC 10 Unmodified _GVVPHPFPLC_ 0 0 0 REV__ENST00000424459.7_2_5:56471490-56471616:+|nuORF REV__ENST00000424459.7_2_5:56471490-56471616:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2826538085938 2 533.281137 1064.54772 NaN NaN NaN NaN NaN NaN NaN 178.44 1 173.53 173.03 174.03 -4.9088 0 0 0 0.22588 1 35596 35596 1.8442 0.19162 1 + 18596 21546 12158 12162 18595 18595 0.018030082964060057 GVVPRRLKLL 10 Unmodified _GVVPRRLKLL_ 0 0 0 REV__NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant REV__NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3298950195312 2 575.892775 1149.771 0.2505 0.00014426 -2.3921 -0.0013776 -2.1416 -0.0012334 576.392678221568 118.55 0.18051 114.05 113.93 114.11 -4.502 5 4 2 0 0 0 1.1344 1 23374 23374 0 0 1 6095600 + 18597 19151 12159 12163 18596 18596 0.20210245072962607 GVVPRRLKLL 10 Unmodified _GVVPRRLKLL_ 0 0 0 REV__NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant REV__NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32763671875 2 575.892775 1149.771 0.28428 0.00016371 -1.038 -0.00059775 -0.75368 -0.00043404 576.3931993213573 119.89 0.17676 115.36 115.29 115.47 -4.5221 8 4 2 0 0 0 0.91149 1 23644 23644 0.45834 0.057624 1 1897500 + 18598 19151 12159 12163 18597 18597 0.20210245072962607 GVVQEERNY 9 Unmodified _GVVQEERNY_ 0 0 0 tr|U7SSS3|U7SSS3_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01474PE=4SV=1 tr|U7SSS3|U7SSS3_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01474PE=4SV=1 tr|U7SSS3|U7SSS3_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01474PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7705688476562 2 547.26727 1092.51999 0.56964 0.00031175 -0.44323 -0.00024256 0.12641 6.9181E-05 547.2669792801496 43.05 0.93079 43.05 42.639 43.569 0 52 26 2 0 0 0 0.66537 1 7999 7999 8.5933 0.68312 1 30342000 18599 26112 12160 12164 18598 18598 -0.022572234301378558 GVVRHGEKRL 10 Unmodified _GVVRHGEKRL_ 0 0 0 REV__ENST00000552427.1_1_12:105464346-105478214:-|nuORF REV__ENST00000552427.1_1_12:105464346-105478214:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.326416015625 2 575.843813 1149.67307 0.3987 0.00022959 -1.1065 -0.00063718 -0.70781 -0.00040759 575.8430280591883 154.83 2.5682 149.58 147.54 150.11 -5.2527 156 72 3 0 0 0 0.74994 1 29842 29842 5.7319 5.7319 1 6641300 + 18600 13005 12161 12165 18599 18599 0.10422436476983421 GVVRLFCLLLL 11 Unmodified _GVVRLFCLLLL_ 0 0 0 ENST00000261254.7_1_12:4412413-4412500:+|nuORF ENST00000261254.7_1_12:4412413-4412500:+|nuORF ENST00000261254.7_1_12:4412413-4412500:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 623.402587890625 2 623.391219 1244.76789 NaN NaN NaN NaN NaN NaN NaN 167.21 1 162.27 161.77 162.77 -4.948 0 0 0 0.22632 1 32870 32870 0.00056442 0 1 18601 8294 12162 12166 18600 18600 0.15529233903976092 GVVRTRVRLVL 11 Unmodified _GVVRTRVRLVL_ 0 0 0 REV__ENST00000371959.7_1_X:112021633-112021759:-|nuORF REV__ENST00000371959.7_1_X:112021633-112021759:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 634.6032104492188 2 634.419688 1266.82482 NaN NaN NaN NaN NaN NaN NaN 171.7 1 166.91 166.41 167.41 -4.7898 0 0 0 0.22632 1 34928 34928 0 0 1 + 18602 21015 12163 12167 18601 18601 0.20208417504682075 GVVSEEFTIT 10 Unmodified _GVVSEEFTIT_ 0 0 0 REV__ENSG00000137812|ENST00000399668|KNL1 REV__ENSG00000137812|ENST00000399668|KNL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2724609375 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 137.18 1 137.18 136.68 137.68 0 0 0 0 2.8426 1 27201 27201 0.043787 0.035511 1 + 18603 16412 12164 12168 18602 18602 -0.0031399072172462184 GVVTKCDAGP 10 Unmodified _GVVTKCDAGP_ 0 0 0 REV__ENSG00000206579|ENST00000327381|XKR4 REV__ENSG00000206579|ENST00000327381|XKR4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1601257324219 3 316.160265 945.458967 NaN NaN NaN NaN NaN NaN NaN 51.8 1 48.755 48.255 49.255 -3.0453 0 0 0 0.22588 1 9520 9520 0.77653 0 1 + 18604 19626 12165 12169 18603 18603 -0.015944517339448794 GVVVFDVNEQ 10 Unmodified _GVVVFDVNEQ_ 0 0 0 REV__tr|U7T0V4|U7T0V4_FUSNU4-nitrophenylphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00688PE=4SV=1 REV__tr|U7T0V4|U7T0V4_FUSNU4-nitrophenylphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00688PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 369.23858642578125 3 369.188989 1104.54514 NaN NaN NaN NaN NaN NaN NaN 158.58 1 153.31 152.81 153.81 -5.2712 0 0 0 0.22588 1 30770 30770 0.77653 0.31819 1 + 18605 25280 12166 12170 18604 18604 -0.0029516862757645868 GVVVFDVNEQ 10 Unmodified _GVVVFDVNEQ_ 0 0 0 REV__tr|U7T0V4|U7T0V4_FUSNU4-nitrophenylphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00688PE=4SV=1 REV__tr|U7T0V4|U7T0V4_FUSNU4-nitrophenylphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00688PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 369.2743835449219 3 369.188989 1104.54514 NaN NaN NaN NaN NaN NaN NaN 159.3 1 154.03 153.53 154.53 -5.2712 0 0 0 0.22588 1 30909 30909 0.77653 0.31819 1 + 18606 25280 12166 12170 18605 18605 -0.0029516862757645868 GVVVFKFTKHV 11 Unmodified _GVVVFKFTKHV_ 0 0 0 REV__ENSG00000104689|ENST00000221132|TNFRSF10A REV__ENSG00000104689|ENST00000221132|TNFRSF10A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.761474609375 2 630.876791 1259.73903 NaN NaN NaN NaN NaN NaN NaN 120.54 1 120.54 120.04 121.04 0 0 0 0 0.22632 1 23760 23760 0.00056442 0 1 + 18607 14933 12167 12171 18606 18606 0.11954832599190013 GVVVLVKTLD 10 Unmodified _GVVVLVKTLD_ 0 0 0 ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.2205810546875 3 348.221742 1041.6434 NaN NaN NaN NaN NaN NaN NaN 61.756 1 58.795 58.295 59.295 -2.9614 0 0 0 0.22588 1 11911 11911 1.9064 0 1 18608 7363 12168 12172 18607 18607 0.12424059688282796 GVVYGLAA 8 Unmodified _GVVYGLAA_ 0 0 0 nc|ENSG00000070610|Q9HCG7-2|GBA2;ENSG00000070610|ENST00000378103|GBA2;nc|ENSG00000070610|Q9HCG7-3|GBA2 nc|ENSG00000070610|Q9HCG7-2|GBA2 nc|ENSG00000070610|Q9HCG7-2|GBA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21380615234375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 109.16 1 104.78 104.28 105.28 -4.3776 0 0 0 0.23294 1 21514 21514 0.12286 0 1 18609 1435 12169 12173 18608 18608 0.027670567772247523 GVVYVVIGF 9 Unmodified _GVVYVVIGF_ 0 0 0 REV__ENSG00000099957|ENST00000413302|P2RX6 REV__ENSG00000099957|ENST00000413302|P2RX6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 476.47991943359375 2 476.778754 951.542954 NaN NaN NaN NaN NaN NaN NaN 157.73 1 157.73 157.23 158.23 0 0 0 0 0.1966 1 31665 31665 0.40827 0 1 + 18610 14652 12170 12174 18609 18609 0.06524447425283597 GVWAWAPS 8 Unmodified _GVWAWAPS_ 0 0 0 ENST00000392038.6_1_19:40738535-40738706:-|nuORF ENST00000392038.6_1_19:40738535-40738706:-|nuORF ENST00000392038.6_1_19:40738535-40738706:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21697998046875 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 122.83 1 122.83 122.33 123.33 0 0 0 0 0.21486 1 24209 24209 9.3474 0 1 18611 9366 12171 12175 18610 18610 -0.023224249912459527 GVWAWAPS 8 Unmodified _GVWAWAPS_ 0 0 0 ENST00000392038.6_1_19:40738535-40738706:-|nuORF ENST00000392038.6_1_19:40738535-40738706:-|nuORF ENST00000392038.6_1_19:40738535-40738706:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21649169921875 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 102.63 1 98.44 97.94 98.94 -4.1861 0 0 0 0.21486 1 20173 20173 10.183 0 1 18612 9366 12171 12175 18611 18611 -0.023224249912459527 GVWAWAPS 8 Unmodified _GVWAWAPS_ 0 0 0 ENST00000392038.6_1_19:40738535-40738706:-|nuORF ENST00000392038.6_1_19:40738535-40738706:-|nuORF ENST00000392038.6_1_19:40738535-40738706:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2270812988281 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 102.67 1 98.479 97.979 98.979 -4.1861 0 0 0 0.22834 1 20181 20181 0.12286 0 1 18613 9366 12171 12175 18612 18612 -0.023224249912459527 GVWAWAPS 8 Unmodified _GVWAWAPS_ 0 0 0 ENST00000392038.6_1_19:40738535-40738706:-|nuORF ENST00000392038.6_1_19:40738535-40738706:-|nuORF ENST00000392038.6_1_19:40738535-40738706:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21636962890625 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 102.54 1 98.521 98.021 99.021 -4.0212 0 0 0 0.21486 1 19709 19709 10.183 0 1 18614 9366 12171 12175 18613 18613 -0.023224249912459527 GVWAWAPS 8 Unmodified _GVWAWAPS_ 0 0 0 ENST00000392038.6_1_19:40738535-40738706:-|nuORF ENST00000392038.6_1_19:40738535-40738706:-|nuORF ENST00000392038.6_1_19:40738535-40738706:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22833251953125 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 102.62 1 98.6 98.1 99.1 -4.0212 0 0 0 0.21486 1 19726 19726 10.183 0 1 18615 9366 12171 12175 18614 18614 -0.023224249912459527 GVWEEWGS 8 Unmodified _GVWEEWGS_ 0 0 0 ADGRB2|p.L1141Cfs*35|1|0.34|ENSG00000121753|chr1:31735214-31735214|G/-|frameshift_variant;nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2;ENST00000530134.5_1_1:32205534-32221699:-|nuORF ADGRB2|p.L1141Cfs*35|1|0.34|ENSG00000121753|chr1:31735214-31735214|G/-|frameshift_variant ADGRB2|p.L1141Cfs*35|1|0.34|ENSG00000121753|chr1:31735214-31735214|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1552429199219 3 317.139859 948.397747 NaN NaN NaN NaN NaN NaN NaN 40.192 1 37.652 37.152 38.152 -2.5398 0 0 0 0.21486 1 7194 7194 0.45834 0 1 18616 74 12172 12176 18615 18615 -0.07851640441708696 GVWENPPSA 9 Unmodified _GVWENPPSA_ 0 0 0 ENSG00000159592|ENST00000355105|GPBP1L1 ENSG00000159592|ENST00000355105|GPBP1L1 ENSG00000159592|ENST00000355105|GPBP1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7291564941406 2 478.727249 955.439946 0.005593 2.6775E-06 0.97448 0.00046651 0.98008 0.00046919 478.7283023339539 82.519 0.73528 78.911 78.531 79.266 -3.6079 28 20 2 0 0 0 0.62102 1 16137 16137 11.64 0 1 1157000 18617 5212 12173 12177 18616 18616 -0.03955665033333844 GVWEPPLHF 9 Unmodified _GVWEPPLHF_ 0 0 0 ENST00000265465.7_1_11:65029470-65029812:+|nuORF ENST00000265465.7_1_11:65029470-65029812:+|nuORF ENST00000265465.7_1_11:65029470-65029812:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2771606445312 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 142.45 1 137.79 137.29 138.29 -4.656 0 0 0 0.19656 1 28158 28158 0.40827 0.37898 1 18618 8358 12174 12178 18617 18617 0.0022177765142714634 GVWFRCLV 8 Unmodified _GVWFRCLV_ 0 0 0 ENST00000497493.1_1_21:38597847-38598096:-|nuORF ENST00000497493.1_1_21:38597847-38598096:-|nuORF ENST00000497493.1_1_21:38597847-38598096:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2651062011719 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 73.81 1 73.81 73.31 74.31 0 0 0 0 0.22666 1 14322 14322 0.25148 0.12861 1 18619 10592 12175 12179 18618 18618 0.020827564704745782 GVWFRCLV 8 Unmodified _GVWFRCLV_ 0 0 0 ENST00000497493.1_1_21:38597847-38598096:-|nuORF ENST00000497493.1_1_21:38597847-38598096:-|nuORF ENST00000497493.1_1_21:38597847-38598096:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2606201171875 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 88.665 1 88.665 88.165 89.165 0 0 0 0 0.22834 1 17308 17308 0.68139 0.42991 1 18620 10592 12175 12179 18619 18619 0.020827564704745782 GVWFRCLV 8 Unmodified _GVWFRCLV_ 0 0 0 ENST00000497493.1_1_21:38597847-38598096:-|nuORF ENST00000497493.1_1_21:38597847-38598096:-|nuORF ENST00000497493.1_1_21:38597847-38598096:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2606201171875 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 88.685 1 88.685 88.185 89.185 0 0 0 0 0.21486 1 17311 17311 10.183 0.83596 1 18621 10592 12175 12179 18620 18620 0.020827564704745782 GVWFRCLV 8 Unmodified _GVWFRCLV_ 0 0 0 ENST00000497493.1_1_21:38597847-38598096:-|nuORF ENST00000497493.1_1_21:38597847-38598096:-|nuORF ENST00000497493.1_1_21:38597847-38598096:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2644958496094 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 82.6 1 78.992 78.492 79.492 -3.6079 0 0 0 0.22834 1 16141 16141 0.12286 0 1 18622 10592 12175 12179 18621 18621 0.020827564704745782 GVWFRCLV 8 Unmodified _GVWFRCLV_ 0 0 0 ENST00000497493.1_1_21:38597847-38598096:-|nuORF ENST00000497493.1_1_21:38597847-38598096:-|nuORF ENST00000497493.1_1_21:38597847-38598096:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26397705078125 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 175.71 1 170.92 170.42 171.42 -4.7898 0 0 0 0.21486 1 35926 35926 5.7604 1.4312 1 18623 10592 12175 12179 18622 18622 0.020827564704745782 GVWGSRAIGPS 11 Unmodified _GVWGSRAIGPS_ 0 0 0 REV__ENST00000595173.1_1_19:51379666-51379828:+|nuORF REV__ENST00000595173.1_1_19:51379666-51379828:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7885131835938 2 543.788173 1085.56179 0.85879 0.000467 -0.23196 -0.00012613 0.62684 0.00034087 543.7878355974462 22.453 0.34084 20.979 20.763 21.104 -1.4742 12 9 2 0 0 0 0.61937 1 3856 3856 17.113 0.96379 1 644610 + 18624 23373 12176 12180 18623 18623 0.02243377049035189 GVWGTWAP 8 Unmodified _GVWGTWAP_ 0 0 0 REV__ENST00000599662.1_1_19:42312894-42313461:+|nuORF REV__ENST00000599662.1_1_19:42312894-42313461:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2164001464844 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 62.416 1 59.455 58.955 59.955 -2.9614 0 0 0 0.21486 1 12044 12044 10.183 0.83596 1 + 18625 23406 12177 12181 18624 18624 -0.023224249912459527 GVWGTWAP 8 Unmodified _GVWGTWAP_ 0 0 0 REV__ENST00000599662.1_1_19:42312894-42313461:+|nuORF REV__ENST00000599662.1_1_19:42312894-42313461:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2356262207031 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 62.811 1 59.85 59.35 60.35 -2.9614 0 0 0 0.21323 1 12123 12123 14.582 5.2343 1 + 18626 23406 12177 12181 18625 18625 -0.023224249912459527 GVWLEQREW 9 Unmodified _GVWLEQREW_ 0 0 0 nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2 nc|ENSG00000134759|Q6IA86-2|ELP2 nc|ENSG00000134759|Q6IA86-2|ELP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 601.8018798828125 2 601.80128 1201.58801 NaN NaN NaN NaN NaN NaN NaN 167.67 1 167.67 167.17 168.17 0 0 0 0 0.23508 1 34279 34279 8.5933 0.43775 1 18627 12336 12178 12182 18626 18626 -0.004723537794689037 GVWLKRKHA 9 Unmodified _GVWLKRKHA_ 0 0 0 ENSG00000124818|ENST00000371211|OPN5 ENSG00000124818|ENST00000371211|OPN5 ENSG00000124818|ENST00000371211|OPN5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.774169921875 2 547.832717 1093.65088 NaN NaN NaN NaN NaN NaN NaN 152.57 1 147.33 146.83 147.83 -5.2365 0 0 0 0.23508 1 29580 29580 9.3474 4.1168 1 18628 3335 12179 12183 18627 18627 0.10780256799216659 GVWLPPSHGH 10 Unmodified _GVWLPPSHGH_ 0 0 0 ENST00000444078.5_1_2:231774643-231775150:-|nuORF ENST00000444078.5_1_2:231774643-231775150:-|nuORF ENST00000444078.5_1_2:231774643-231775150:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7952880859375 2 543.777608 1085.54066 0.44319 0.000241 -1.0897 -0.00059255 -0.64649 -0.00035155 543.7776559464628 150.76 0.13953 145.64 145.52 145.66 -5.1204 5 3 2 0 0 0 0.7323 1 29220 29220 7.9102 0.62092 1 1067100 18629 9921 12180 12184 18628 18628 0.001314117401761905 GVWPNRWL 8 Unmodified _GVWPNRWL_ 0 0 0 REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.21258544921875 3 343.187255 1026.53993 NaN NaN NaN NaN NaN NaN NaN 82.609 1 82.609 82.109 83.109 0 0 0 0 0.21486 1 16099 16099 1.8442 0.51471 1 + 18630 14817 12181 12185 18629 18629 0.027726170911364534 GVWPRSSVPP 10 Unmodified _GVWPRSSVPP_ 0 0 0 REV__MPL|p.S137Vfs*29|1|0.21|ENSG00000117400|chr1:43339282-43339282|C/-|frameshift_variant REV__MPL|p.S137Vfs*29|1|0.21|ENSG00000117400|chr1:43339282-43339282|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.282470703125 2 541.293091 1080.57163 0.14516 7.8574E-05 0.20434 0.00011061 0.3495 0.00018918 541.2931157486837 59.842 1.714 56.528 55.854 57.568 -3.3139 95 48 3 0 0 0 0.57735 1 11047 11047 20.454 1.1966 1 1761600 + 18631 23874 12182 12186 18630 18630 0.03456565054420935 GVWQYMIM 8 Unmodified _GVWQYMIM_ 0 0 0 REV__ENST00000297338.6_1_8:117868470-117868917:-|nuORF REV__ENST00000297338.6_1_8:117868470-117868917:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.22222900390625 3 343.162841 1026.46669 0.28863 9.9045E-05 -0.67123 -0.00023034 -0.38261 -0.0001313 343.16262643598526 86.803 0.24094 82.852 82.754 82.995 -3.9503 10 6 2 0 0 0 0.80867 1 16535 16535 3.9444 1.4459 1 591690 + 18632 20379 12183 12187 18631 18631 -0.04548015738009781 GVWRLGLV 8 Unmodified _GVWRLGLV_ 0 0 0 HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|16|1|anti-sense HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|16|1|anti-sense HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|16|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.2746887207031 2 450.276712 898.538872 NaN NaN NaN NaN NaN NaN NaN 13.415 1 12.242 11.742 12.742 -1.173 0 0 0 0.21486 1 1738 1738 0.79363 0 1 18633 11892 12184 12188 18632 18632 0.08554402722211307 GVWRLLFK 8 Unmodified _GVWRLLFK_ 0 0 0 ENST00000539018.5_1_17:57955667-57970134:-|nuORF ENST00000539018.5_1_17:57955667-57970134:-|nuORF ENST00000539018.5_1_17:57955667-57970134:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.4798583984375 3 340.2114 1017.61237 NaN NaN NaN NaN NaN NaN NaN 74.888 1 74.888 74.388 75.388 0 0 0 0 0.21486 1 14543 14543 0.45834 0 1 18634 11054 12185 12189 18633 18633 0.10426951164697584 GVWRLLFK 8 Unmodified _GVWRLLFK_ 0 0 0 ENST00000539018.5_1_17:57955667-57970134:-|nuORF ENST00000539018.5_1_17:57955667-57970134:-|nuORF ENST00000539018.5_1_17:57955667-57970134:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.2334289550781 3 340.2114 1017.61237 NaN NaN NaN NaN NaN NaN NaN 103.22 1 103.22 102.72 103.72 0 0 0 0 0.21486 1 20280 20280 0.45834 0 1 18635 11054 12185 12189 18634 18634 0.10426951164697584 GVWRLLFK 8 Unmodified _GVWRLLFK_ 0 0 0 ENST00000539018.5_1_17:57955667-57970134:-|nuORF ENST00000539018.5_1_17:57955667-57970134:-|nuORF ENST00000539018.5_1_17:57955667-57970134:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 340.2338562011719 3 340.2114 1017.61237 NaN NaN NaN NaN NaN NaN NaN 118.2 1 113.7 113.2 114.2 -4.502 0 0 0 0.21486 1 23302 23302 0.45834 0 1 18636 11054 12185 12189 18635 18635 0.10426951164697584 GVWRLLFK 8 Unmodified _GVWRLLFK_ 0 0 0 ENST00000539018.5_1_17:57955667-57970134:-|nuORF ENST00000539018.5_1_17:57955667-57970134:-|nuORF ENST00000539018.5_1_17:57955667-57970134:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.2109375 3 340.2114 1017.61237 NaN NaN NaN NaN NaN NaN NaN 62.903 1 59.646 59.146 60.146 -3.2567 0 0 0 0.21486 1 11798 11798 0.45834 0 1 18637 11054 12185 12189 18636 18636 0.10426951164697584 GVWRPRRYHQS 11 Unmodified _GVWRPRRYHQS_ 0 0 0 REV__ENST00000552813.5_1_12:56391469-56396615:+|nuORF REV__ENST00000552813.5_1_12:56391469-56396615:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24249267578125 3 481.256843 1440.7487 NaN NaN NaN NaN NaN NaN NaN 130.86 1 126.09 125.59 126.59 -4.7725 0 0 0 0.22632 1 25190 25190 0.026206 0 1 + 18638 22952 12186 12190 18637 18637 0.045954136572618154 GVWVRYYKA 9 Unmodified _GVWVRYYKA_ 0 0 0 REV__ENST00000372396.3_1_1:44170697-44170820:+|nuORF REV__ENST00000372396.3_1_1:44170697-44170820:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.20916748046875 3 381.209948 1140.60801 NaN NaN NaN NaN NaN NaN NaN 26.351 1 24.429 23.929 24.929 -1.9222 0 0 0 0.19624 1 4362 4362 0 0 1 + 18639 21022 12187 12191 18638 18638 0.04333441951121131 GVWWCCMDGF 10 Unmodified _GVWWCCMDGF_ 0 0 0 REV__ENSG00000186529|ENST00000221307|CYP4F3 REV__ENSG00000186529|ENST00000221307|CYP4F3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2926635742188 2 602.224648 1202.43474 NaN NaN NaN NaN NaN NaN NaN 147.76 1 142.6 142.1 143.1 -5.1557 0 0 0 2.8426 1 28598 28598 0 0 1 + 18640 13629 12188 12192 18639 18639 -0.15837751483491047 GVWWPDMH 8 Unmodified _GVWWPDMH_ 0 0 0 nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD nc|ENSG00000124299|P12955-3|PEPD nc|ENSG00000124299|P12955-3|PEPD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.22161865234375 3 343.153334 1026.43817 NaN NaN NaN NaN NaN NaN NaN 88.023 1 88.023 87.523 88.523 0 0 0 0 0.21486 1 17178 17178 1.8442 1.6849 1 18641 3308 12189 12193 18640 18640 -0.07398997322957257 GVWWPDMH 8 Unmodified _GVWWPDMH_ 0 0 0 nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD nc|ENSG00000124299|P12955-3|PEPD nc|ENSG00000124299|P12955-3|PEPD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.1540222167969 3 343.153334 1026.43817 NaN NaN NaN NaN NaN NaN NaN 106.51 1 102.13 101.63 102.63 -4.3764 0 0 0 0.21486 1 20429 20429 1.8442 1.2811 1 18642 3308 12189 12193 18641 18641 -0.07398997322957257 GVWWPDMH 8 Unmodified _GVWWPDMH_ 0 0 0 nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD nc|ENSG00000124299|P12955-3|PEPD nc|ENSG00000124299|P12955-3|PEPD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.2110290527344 3 343.153334 1026.43817 NaN NaN NaN NaN NaN NaN NaN 124.44 1 119.85 119.35 120.35 -4.5926 0 0 0 0.21486 1 23943 23943 1.8442 0 1 18643 3308 12189 12193 18642 18642 -0.07398997322957257 GVWWSLPA 8 Unmodified _GVWWSLPA_ 0 0 0 REV__CNTNAP4|p.T696A|1|0.12|ENSG00000152910|chr16:76494915-76494915|A/G|missense_variant REV__CNTNAP4|p.T696A|1|0.12|ENSG00000152910|chr16:76494915-76494915|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2284240722656 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 86.667 1 82.717 82.217 83.217 -3.9503 0 0 0 0.23711 1 16500 16500 0.12286 0.11459 1 + 18644 13468 12190 12194 18643 18643 0.004384345598964501 GVWWSNGW 8 Unmodified _GVWWSNGW_ 0 0 0 REV__ENST00000573850.1_1_16:27709674-27761267:+|nuORF REV__ENST00000573850.1_1_16:27709674-27761267:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 331.0416564941406 3 331.15221 990.434801 -0.75403 -0.0002497 0.62387 0.0002066 -0.13015 -4.3101E-05 331.1524285399459 44.062 0.35015 41.315 41.183 41.533 -2.7475 10 9 2 0 0 0 1.0281 1 7991 7991 0.45834 0 1 176130 + 18645 14065 12191 12195 18644 18644 -0.06079924105290502 GVWYIWHNE 9 Unmodified _GVWYIWHNE_ 0 0 0 REV__nc|ENSG00000171885|P55087-2|AQP4 REV__nc|ENSG00000171885|P55087-2|AQP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3007202148438 2 602.282723 1202.55089 NaN NaN NaN NaN NaN NaN NaN 16.231 1 15.015 14.515 15.515 -1.2159 0 0 0 0.23508 1 2544 2544 2.3027 0.4585 1 + 18646 18259 12192 12196 18645 18645 -0.0422802532523292 GVWYIWHNE 9 Unmodified _GVWYIWHNE_ 0 0 0 REV__nc|ENSG00000171885|P55087-2|AQP4 REV__nc|ENSG00000171885|P55087-2|AQP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2843627929688 2 602.282723 1202.55089 NaN NaN NaN NaN NaN NaN NaN 148.99 1 144.28 143.78 144.78 -4.7095 0 0 0 0.19624 1 29588 29588 0 0 1 + 18647 18259 12192 12196 18646 18646 -0.0422802532523292 GVYDGCGA 8 Unmodified _GVYDGCGA_ 0 0 0 REV__ENST00000419435.5_1_3:193311101-193321290:+|nuORF REV__ENST00000419435.5_1_3:193311101-193321290:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3922729492188 1 741.287216 740.27994 0.90008 0.00066722 2.2515 0.001669 3.1516 0.0023362 741.2867068749 170.6 0.1693 165.81 165.69 165.86 -4.7898 6 4 2 0 0 0 8448 1 34643 34643 0 0 1 9222300 + 18648 20891 12193 12197 18647 18647 -0.10058916302023135 GVYEDSSDS 9 Unmodified _GVYEDSSDS_ 0 0 0 CUEDC1|p.F320Nfs*12|1|0.3|ENSG00000180891|chr17:57868223-57868226|CAAA/-|frameshift_variant;nc|ENSG00000180891|Q9NWM3-2|CUEDC1;ENSG00000180891|ENST00000577830|CUEDC1 CUEDC1|p.F320Nfs*12|1|0.3|ENSG00000180891|chr17:57868223-57868226|CAAA/-|frameshift_variant CUEDC1|p.F320Nfs*12|1|0.3|ENSG00000180891|chr17:57868223-57868226|CAAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.1875915527344 3 320.126055 957.356335 NaN NaN NaN NaN NaN NaN NaN 28.593 1 26.596 26.096 27.096 -1.9962 0 0 0 0.19624 1 4833 4833 0.0033805 0 1 18649 755 12194 12198 18648 18648 -0.12404865991697989 GVYEKLDVR 9 Unmodified _GVYEKLDVR_ 0 0 0 REV__ENST00000460579.5_1_2:219527197-219528106:+|nuORF REV__ENST00000460579.5_1_2:219527197-219528106:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 90.52 1 86.742 86.242 87.242 -3.7779 0 0 0 0.23508 1 17323 17323 6.1918 0 1 + 18650 14315 12195 12199 18649 18649 0.0461712798901317 GVYFQSFV 8 Unmodified _GVYFQSFV_ 0 0 0 REV__nc|ENSG00000188107|Q5T1H1|EYS REV__nc|ENSG00000188107|Q5T1H1|EYS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.17486572265625 3 316.160483 945.459619 NaN NaN NaN NaN NaN NaN NaN 14.235 1 13.025 12.525 13.525 -1.2106 0 0 0 0.21486 1 1870 1870 0.45834 0 1 + 18651 24215 12196 12200 18650 18650 -0.015292890225623523 GVYFQSFV 8 Unmodified _GVYFQSFV_ 0 0 0 REV__nc|ENSG00000188107|Q5T1H1|EYS REV__nc|ENSG00000188107|Q5T1H1|EYS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1756286621094 3 316.160483 945.459619 NaN NaN NaN NaN NaN NaN NaN 16.271 1 14.917 14.417 15.417 -1.3534 0 0 0 0.21486 1 2299 2299 0.45834 0 1 + 18652 24215 12196 12200 18651 18651 -0.015292890225623523 GVYHVQRNSSY 11 Unmodified _GVYHVQRNSSY_ 0 0 0 ENST00000409900.7_1_2:175664519-175664684:-|nuORF ENST00000409900.7_1_2:175664519-175664684:-|nuORF ENST00000409900.7_1_2:175664519-175664684:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21563720703125 3 437.214309 1308.6211 NaN NaN NaN NaN NaN NaN NaN 137.56 1 132.92 132.42 133.42 -4.6413 0 0 0 0.23044 1 27150 27150 7.9454 1.711 1 18653 9571 12197 12201 18652 18652 -0.02086771727431369 GVYKGLLR 8 Unmodified _GVYKGLLR_ 0 0 0 REV__tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1 REV__tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7532043457031 2 453.281995 904.549437 NaN NaN NaN NaN NaN NaN NaN 24.142 1 22.607 22.107 23.107 -1.5342 0 0 0 0.2396 1 3921 3921 0 0 1 + 18654 25342 12198 12202 18653 18653 0.09334385376678256 GVYKIQEM 8 Unmodified _GVYKIQEM_ 0 0 0 REV__ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant REV__ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.167724609375 3 323.168761 966.484453 NaN NaN NaN NaN NaN NaN NaN 75.791 1 72.376 71.876 72.876 -3.4151 0 0 0 0.21486 1 14784 14784 3.5965 0 1 + 18655 12967 12199 12203 18654 18654 -0.0001297721150876896 GVYKKWQKFWR 11 Unmodified _GVYKKWQKFWR_ 0 0 0 REV__ENSG00000114316|ENST00000265560|USP4 REV__ENSG00000114316|ENST00000265560|USP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 509.692626953125 3 509.285739 1524.83539 NaN NaN NaN NaN NaN NaN NaN 173.88 1 169.09 168.59 169.59 -4.7898 0 0 0 0.22632 1 35496 35496 0.00056442 0 1 + 18656 15368 12200 12204 18655 18655 0.09396400159084806 GVYPGYYLTF 10 Unmodified _GVYPGYYLTF_ 0 0 0 ENST00000486484.5_1_2:9002434-9143743:-|nuORF;ENSG00000143797|ENST00000305997|MBOAT2;ENST00000494760.1_1_2:9002596-9008596:-|nuORF ENST00000486484.5_1_2:9002434-9143743:-|nuORF ENST00000486484.5_1_2:9002434-9143743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2764282226562 2 590.289682 1178.56481 NaN NaN NaN NaN NaN NaN NaN 113.06 1 113.06 112.56 113.56 0 0 0 0 0.1553 1 22232 22232 36.044 4.7759 1 18657 4519 12201 12205 18656 18656 -0.01732792616826373 GVYPGYYLTF 10 Unmodified _GVYPGYYLTF_ 0 0 0 ENST00000486484.5_1_2:9002434-9143743:-|nuORF;ENSG00000143797|ENST00000305997|MBOAT2;ENST00000494760.1_1_2:9002596-9008596:-|nuORF ENST00000486484.5_1_2:9002434-9143743:-|nuORF ENST00000486484.5_1_2:9002434-9143743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2749633789062 2 590.289682 1178.56481 NaN NaN NaN NaN NaN NaN NaN 117.34 1 112.98 112.48 113.48 -4.3585 0 0 0 0.1553 1 22585 22585 36.044 4.7759 1 18658 4519 12201 12205 18657 18657 -0.01732792616826373 GVYPIFLNG 9 Unmodified _GVYPIFLNG_ 0 0 0 ENSG00000116147|ENST00000367674|TNR;nc|ENSG00000116147|Q92752-2|TNR ENSG00000116147|ENST00000367674|TNR ENSG00000116147|ENST00000367674|TNR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2646179199219 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 61.537 1 58.168 57.668 58.668 -3.3694 0 0 0 0.1966 1 11472 11472 0.029283 0 1 18659 2911 12202 12206 18658 18658 0.027349729028628644 GVYQAHQA 8 Unmodified _GVYQAHQA_ 0 0 0 REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2281799316406 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 34.594 1 32.277 31.777 32.777 -2.3175 0 0 0 0.23749 1 6356 6356 0.0082765 0 1 + 18660 13211 12203 12207 18659 18659 -0.027245144849530334 GVYQFYVLY 9 Unmodified _GVYQFYVLY_ 0 0 0 REV__ENST00000470520.5_1_1:1244011-1244481:+|nuORF REV__ENST00000470520.5_1_1:1244011-1244481:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3181762695312 2 576.292225 1150.5699 NaN NaN NaN NaN NaN NaN NaN 135.1 1 135.1 134.6 135.6 0 0 0 0 0.23411 1 26754 26754 13.508 0 1 + 18661 18134 12204 12208 18660 18660 0.0006351124582124612 GVYRAFVDNY 10 Unmodified _GVYRAFVDNY_ 0 0 0 nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR nc|ENSG00000186716|P11274-2|BCR nc|ENSG00000186716|P11274-2|BCR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2783203125 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 145.03 1 145.03 144.53 145.53 0 0 0 0 0.22588 1 28985 28985 7.2892 0.56607 1 18662 7077 12205 12209 18661 18661 -0.021160600163739218 GVYRKHGH 8 Unmodified _GVYRKHGH_ 0 0 0 ENST00000542472.1_1_12:6626979-6631036:+|nuORF ENST00000542472.1_1_12:6626979-6631036:+|nuORF ENST00000542472.1_1_12:6626979-6631036:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.0318298339844 3 318.506987 952.499132 0.045011 1.4336E-05 -1.5178 -0.00048344 -1.4728 -0.0004691 318.50641070619685 51.271 0.38786 48.225 48.015 48.403 -3.0453 16 10 2 0 0 0 0.83271 1 9369 9369 1.8442 0.6509 1 501720 18663 11089 12206 12210 18662 18662 0.020982757715160005 GVYRKHGH 8 Unmodified _GVYRKHGH_ 0 0 0 ENST00000542472.1_1_12:6626979-6631036:+|nuORF ENST00000542472.1_1_12:6626979-6631036:+|nuORF ENST00000542472.1_1_12:6626979-6631036:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 318.506987 952.499132 -0.43205 -0.00013761 -1.1363 -0.00036192 -1.5684 -0.00049953 318.506564574695 51.117 0.34839 48.235 48 48.348 -2.8824 0.018883 -1.1445E-05 NaN 1.8442 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 775660 18664 11089 12206 12210 0.020982757715160005 GVYRKHGH 8 Unmodified _GVYRKHGH_ 0 0 0 ENST00000542472.1_1_12:6626979-6631036:+|nuORF ENST00000542472.1_1_12:6626979-6631036:+|nuORF ENST00000542472.1_1_12:6626979-6631036:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 318.506987 952.499132 -0.74837 -0.00023836 -0.77102 -0.00024557 -1.5194 -0.00048393 318.5066631085306 51.24 0.52911 48.188 47.888 48.417 -3.0517 -0.02809 0.0003376 NaN 1.8442 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 695020 18665 11089 12206 12210 0.020982757715160005 GVYTRVSH 8 Unmodified _GVYTRVSH_ 0 0 0 nc|ENSG00000122861|P00749-2|PLAU;ENSG00000122861|ENST00000372764|PLAU nc|ENSG00000122861|P00749-2|PLAU nc|ENSG00000122861|P00749-2|PLAU MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 306.25079345703125 3 306.831248 917.471915 -0.14167 -4.3467E-05 0.0078469 2.4077E-06 -0.13382 -4.106E-05 306.83122820433204 22.013 0.45055 20.56 20.314 20.764 -1.4535 26 12 3 0 0 0 1.0268 1 3533 3533 1.8442 1.3383 1 1708900 18666 3243 12207 12211 18663 18663 0.0098774744047887 GVYTRVSH 8 Unmodified _GVYTRVSH_ 0 0 0 nc|ENSG00000122861|P00749-2|PLAU;ENSG00000122861|ENST00000372764|PLAU nc|ENSG00000122861|P00749-2|PLAU nc|ENSG00000122861|P00749-2|PLAU MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 306.831248 917.471915 0.30046 9.2191E-05 -0.47527 -0.00014583 -0.17481 -5.3636E-05 306.8310490371062 22.092 0.34987 20.618 20.413 20.763 -1.4742 0.028848 -0.00024089 NaN 1.8442 25 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1728000 18667 3243 12207 12211 0.0098774744047887 GVYVKVFGIL 10 Unmodified _GVYVKVFGIL_ 0 0 0 ENSG00000204086|ENST00000373040|RPA4 ENSG00000204086|ENST00000373040|RPA4 ENSG00000204086|ENST00000373040|RPA4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7745971679688 2 547.83406 1093.65357 NaN NaN NaN NaN NaN NaN NaN 44.215 1 44.215 43.715 44.715 0 0 0 0 2.8426 1 8290 8290 0.0013812 0.0008168 1 18668 7558 12208 12212 18664 18664 0.11048667413524527 GVYVPHFLY 9 Unmodified _GVYVPHFLY_ 0 0 0 L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|241|2|anti-sense L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|241|2|anti-sense L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|241|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7899169921875 2 547.78711 1093.55967 NaN NaN NaN NaN NaN NaN NaN 146.9 1 141.9 141.4 142.4 -5 0 0 0 0.23048 1 28431 28431 14.582 2.0501 1 18669 12058 12209 12213 18665 18665 0.016629483112410526 GVYVQRNN 8 Unmodified _GVYVQRNN_ 0 0 0 REV__PABPC5|p.Y222Ffs*6|1|0.06|ENSG00000174740|chrX:91436241-91436242|-/TTGA|frameshift_variant REV__PABPC5|p.Y222Ffs*6|1|0.06|ENSG00000174740|chrX:91436241-91436242|-/TTGA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.17242431640625 3 317.166519 948.477728 -0.31231 -9.9053E-05 0.28375 8.9995E-05 -0.028559 -9.0578E-06 317.1665281898733 19.381 0.21427 18.056 17.931 18.145 -1.3251 13 5 3 0 0 0 0.88811 1 2932 2932 0.45834 0 1 1357200 + 18670 18429 12210 12214 18666 18666 0.0014284595214348883 GVYVQRNN 8 Unmodified _GVYVQRNN_ 0 0 0 REV__PABPC5|p.Y222Ffs*6|1|0.06|ENSG00000174740|chrX:91436241-91436242|-/TTGA|frameshift_variant REV__PABPC5|p.Y222Ffs*6|1|0.06|ENSG00000174740|chrX:91436241-91436242|-/TTGA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 317.166519 948.477728 -0.54043 -0.00017141 0.32152 0.00010197 -0.21891 -6.9432E-05 317.1665864074743 18.084 0.28026 18.084 17.915 18.195 0 0.0093767 2.1841E-05 NaN 0.45834 14 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1431100 + 18671 18429 12210 12214 0.0014284595214348883 GVYVQRNN 8 Unmodified _GVYVQRNN_ 0 0 0 REV__PABPC5|p.Y222Ffs*6|1|0.06|ENSG00000174740|chrX:91436241-91436242|-/TTGA|frameshift_variant REV__PABPC5|p.Y222Ffs*6|1|0.06|ENSG00000174740|chrX:91436241-91436242|-/TTGA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 317.166519 948.477728 -0.1461 -4.6337E-05 0.28122 8.9192E-05 0.13512 4.2855E-05 317.1665196368035 19.481 0.25271 18.084 17.955 18.208 -1.3966 0.0093724 -1.6504E-05 NaN 0.45834 14 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1754200 + 18672 18429 12210 12214 0.0014284595214348883 GVYVQRNN 8 Unmodified _GVYVQRNN_ 0 0 0 REV__PABPC5|p.Y222Ffs*6|1|0.06|ENSG00000174740|chrX:91436241-91436242|-/TTGA|frameshift_variant REV__PABPC5|p.Y222Ffs*6|1|0.06|ENSG00000174740|chrX:91436241-91436242|-/TTGA|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 317.166519 948.477728 -0.31231 -9.9053E-05 0.28375 8.9995E-05 -0.028559 -9.0578E-06 317.1665281898733 19.381 0.21427 18.056 17.931 18.145 -1.3251 -0.018749 -1.4094E-05 NaN 0.45834 13 5 3 NaN NaN NaN NaN 0 NaN NaN 0 1357200 + 18673 18429 12210 12214 0.0014284595214348883 GVYYEPSCTQN 11 Unmodified _GVYYEPSCTQN_ 0 0 0 nc|ENSG00000163131|P25774-2|CTSS;ENSG00000163131|ENST00000368985|CTSS nc|ENSG00000163131|P25774-2|CTSS nc|ENSG00000163131|P25774-2|CTSS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7643432617188 2 630.763703 1259.51285 NaN NaN NaN NaN NaN NaN NaN 41.236 1 41.236 40.736 41.736 0 0 0 0 0.22632 1 7689 7689 0.00056442 0 1 18674 5405 12211 12215 18667 18667 -0.10652324092870913 GVYYEPSCTQN 11 Unmodified _GVYYEPSCTQN_ 0 0 0 nc|ENSG00000163131|P25774-2|CTSS;ENSG00000163131|ENST00000368985|CTSS nc|ENSG00000163131|P25774-2|CTSS nc|ENSG00000163131|P25774-2|CTSS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7619018554688 2 630.763703 1259.51285 NaN NaN NaN NaN NaN NaN NaN 55.619 1 55.619 55.119 56.119 0 0 0 0 0.22632 1 10621 10621 0.00056442 0 1 18675 5405 12211 12215 18668 18668 -0.10652324092870913 GWDVLKNYA 9 Unmodified _GWDVLKNYA_ 0 0 0 REV__tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1 REV__tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2710571289062 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 175.63 1 170.75 170.25 171.25 -4.8739 0 0 0 0.19632 1 34926 34926 0.0033805 0 1 + 18676 25433 12212 12216 18669 18669 -0.0005883007381726202 GWDYARFE 8 Unmodified _GWDYARFE_ 0 0 0 REV__ENSG00000204020|ENST00000404459|LIPN REV__ENSG00000204020|ENST00000404459|LIPN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27685546875 2 522.232699 1042.45084 0.45383 0.000237 1.228 0.0006413 1.6818 0.0008783 522.235023889255 155.69 0.21747 150.43 150.33 150.54 -5.2526 8 5 3 0 0 0 8448 1 30183 30183 0.12286 0.11459 1 1016700 + 18677 19507 12213 12217 18670 18670 -0.06868262659031643 GWHSLWLGW 9 Unmodified _GWHSLWLGW_ 0 0 0 SLC25A39|p.R213H|1|0.18|ENSG00000013306|chr17:44321111-44321111|C/T|missense_variant SLC25A39|p.R213H|1|0.18|ENSG00000013306|chr17:44321111-44321111|C/T|missense_variant SLC25A39|p.R213H|1|0.18|ENSG00000013306|chr17:44321111-44321111|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21002197265625 3 381.190776 1140.5505 NaN NaN NaN NaN NaN NaN NaN 118.79 1 114.38 113.88 114.88 -4.4088 0 0 0 0.19638 1 22860 22860 0.073264 0 1 18678 25677 12214 12218 18671 18671 -0.014154002544046307 GWLFRCELQ 9 Unmodified _GWLFRCELQ_ 0 0 0 ENST00000478853.1_1_1:36690034-36690100:+|nuORF ENST00000478853.1_1_1:36690034-36690100:+|nuORF ENST00000478853.1_1_1:36690034-36690100:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3207397460938 2 576.286951 1150.55935 NaN NaN NaN NaN NaN NaN NaN 32.273 1 30.042 29.542 30.542 -2.2305 0 0 0 0.19622 1 5878 5878 0.96228 0 1 18679 10331 12215 12219 18672 18672 -0.009907946802741208 GWLKIWNIEEY 11 Unmodified _GWLKIWNIEEY_ 0 0 0 nc|ENSG00000174776|Q8IV35-3|CFAP337;WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant;ENSG00000174776|ENST00000682715|WDR49;nc|ENSG00000174776|Q8IV35-2|CFAP337 nc|ENSG00000174776|Q8IV35-3|CFAP337 nc|ENSG00000174776|Q8IV35-3|CFAP337 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 484.25164794921875 3 484.25036 1449.72925 NaN NaN NaN NaN NaN NaN NaN 42.687 1 40.081 39.581 40.581 -2.606 0 0 0 0.22632 1 7684 7684 10.016 2.9822 1 18680 6368 12216 12220 18673 18673 0.022375998031520794 GWLLASEW 8 Unmodified _GWLLASEW_ 0 0 0 REV__ENST00000558912.1_1_15:40631124-40631346:-|nuORF REV__ENST00000558912.1_1_15:40631124-40631346:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2421875 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 49.787 1 49.787 49.287 50.287 0 0 0 0 0.23312 1 9416 9416 6.2058 1.3088 1 + 18681 23026 12217 12221 18674 18674 -0.011298866482889025 GWLPLPSF 8 Unmodified _GWLPLPSF_ 0 0 0 ENST00000419457.1_1_13:29296686-29297403:-|nuORF;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1;ENST00000492267.1_1_3:82856210-82856543:-|nuORF ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENST00000419457.1_1_13:29296686-29297403:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.1702880859375 3 306.16909 915.485439 NaN NaN NaN NaN NaN NaN NaN 144.3 1 139.36 138.86 139.86 -4.9445 0 0 0 0.21486 1 27867 27867 1.8442 0.19162 1 18682 772 12218 12222 18675 18675 0.024316052197150384 GWLPLPSF 8 Unmodified _GWLPLPSF_ 0 0 0 ENST00000419457.1_1_13:29296686-29297403:-|nuORF;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1;ENST00000492267.1_1_3:82856210-82856543:-|nuORF ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENST00000419457.1_1_13:29296686-29297403:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.16998291015625 3 306.16909 915.485439 NaN NaN NaN NaN NaN NaN NaN 144.54 1 139.59 139.09 140.09 -4.9445 0 0 0 0.21486 1 27920 27920 1.8442 0.19162 1 18683 772 12218 12222 18676 18676 0.024316052197150384 GWMPGLNE 8 Unmodified _GWMPGLNE_ 0 0 0 ENSG00000105647|ENST00000222254|PIK3R2;PIK3R2|p.P126Lfs*4|1|0.11|ENSG00000105647|chr19:18160521-18160521|C/-|frameshift_variant ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.209716796875 2 452.205096 902.395638 0.24004 0.00010855 0.95504 0.00043187 1.1951 0.00054042 452.20545189862116 122.94 0.8804 122.94 122.57 123.45 0 65 24 3 0 0 0 8448 1 24194 24194 6.2344 0.028574 1 8841400 18684 2326 12219 12223 18677 18677 -0.05946392451153315 GWNKLFDW 8 Unmodified _GWNKLFDW_ 0 0 0 nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant nc|ENSG00000187627|P0DJD0|RGPD1 nc|ENSG00000187627|P0DJD0|RGPD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2780151367188 2 533.261259 1064.50797 -0.2104 -0.0001122 -0.96992 -0.00051722 -1.1803 -0.00062942 533.7622796524366 39.189 1.0859 36.64 36.225 37.311 -2.5491 59 30 4 0 0 0 8448 1 7212 7212 10.074 5.1769 1 2173500 18685 6979 12220 12224 18678 18678 -0.02170795382653523 GWPHKQRL 8 Unmodified _GWPHKQRL_ 0 0 0 ENST00000392011.6_1_2:235963415-235963535:+|nuORF ENST00000392011.6_1_2:235963415-235963535:+|nuORF ENST00000392011.6_1_2:235963415-235963535:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.215576171875 3 341.194521 1020.56173 NaN NaN NaN NaN NaN NaN NaN 96.56 1 92.641 92.141 93.141 -3.9194 0 0 0 0.21486 1 18527 18527 0.45834 0 1 18686 9365 12221 12225 18679 18679 0.05227421839708768 GWPLILAH 8 Unmodified _GWPLILAH_ 0 0 0 ENST00000478257.1_1_9:133972232-133987208:+|nuORF ENST00000478257.1_1_9:133972232-133987208:+|nuORF ENST00000478257.1_1_9:133972232-133987208:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76422119140625 2 453.763438 905.512323 NaN NaN NaN NaN NaN NaN NaN 162.89 1 158.1 157.6 158.6 -4.7898 0 0 0 0.23294 1 32431 32431 0.68139 0.55853 1 18687 10313 12222 12226 18680 18680 0.05578713830880133 GWRAKCPLR 9 Unmodified _GWRAKCPLR_ 0 0 0 REV__ENST00000458001.2_1_13:114546204-114546789:+|nuORF REV__ENST00000458001.2_1_13:114546204-114546789:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.786865234375 2 543.803103 1085.59165 NaN NaN NaN NaN NaN NaN NaN 127.31 1 122.61 122.11 123.11 -4.6998 0 0 0 0.19636 1 24488 24488 2.4985 0 1 + 18688 21861 12223 12227 18681 18681 0.05228037513370509 GWRPFLGP 8 Unmodified _GWRPFLGP_ 0 0 0 REV__ENST00000439523.1_1_1:247206892-247207219:+|nuORF REV__ENST00000439523.1_1_1:247206892-247207219:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2547607421875 2 465.253237 928.491922 NaN NaN NaN NaN NaN NaN NaN 38.628 1 36.186 35.686 36.686 -2.4419 0 0 0 0.23366 1 6880 6880 0.62683 0 1 + 18689 21695 12224 12228 18682 18682 0.024815431710976554 GWRRRRWRRRL 11 Unmodified _GWRRRRWRRRL_ 0 0 0 ENST00000597330.1_1_19:58557520-58558126:+|nuORF ENST00000597330.1_1_19:58557520-58558126:+|nuORF ENST00000597330.1_1_19:58557520-58558126:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 552.0097045898438 3 552.001442 1652.9825 NaN NaN NaN NaN NaN NaN NaN 170.66 1 165.78 165.28 166.28 -4.873 0 0 0 0.23698 1 33785 33785 0 0 1 18690 11674 12225 12229 18683 18683 0.18212354607271664 GWRRWQAWLQP 11 Unmodified _GWRRWQAWLQP_ 0 0 0 REV__ENST00000532868.6_2_11:46366975-46367068:+|nuORF REV__ENST00000532868.6_2_11:46366975-46367068:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3904418945312 2 742.388919 1482.76329 NaN NaN NaN NaN NaN NaN NaN 97.631 1 97.631 97.131 98.131 0 0 0 0 0.22632 1 19135 19135 0.172 0.14579 1 + 18691 22790 12226 12230 18684 18684 0.041214858054217984 GWRSAVSPNL 10 Unmodified _GWRSAVSPNL_ 0 0 0 ENST00000590335.1_1_19:45974274-45974658:+|nuORF;ENST00000587358.1_1_19:45974364-45976267:+|nuORF ENST00000590335.1_1_19:45974274-45974658:+|nuORF ENST00000590335.1_1_19:45974274-45974658:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.785888671875 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 166.74 1 161.95 161.45 162.45 -4.7898 0 0 0 0.22543 1 33535 33535 19.362 2.249 1 18692 11561 12227 12231 18685 18685 0.022433770490579263 GWRVRRMETHR 11 Unmodified _GWRVRRMETHR_ 0 0 0 nc|ENSG00000182310|W5XKT8-2|SPACA6;ENST00000331594.6_19:52196686-52197501:+|nuORF nc|ENSG00000182310|W5XKT8-2|SPACA6 nc|ENSG00000182310|W5XKT8-2|SPACA6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3955078125 2 742.39421 1482.77387 NaN NaN NaN NaN NaN NaN NaN 134.02 1 134.02 133.52 134.52 0 0 0 0 0.22632 1 26526 26526 0.172 0 1 18693 8780 12228 12232 18686 18686 0.0517914518818543 GWSFNQAF 8 Unmodified _GWSFNQAF_ 0 0 0 REV__nc|ENSG00000141956|P57071|PRDM15 REV__nc|ENSG00000141956|P57071|PRDM15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7323303222656 2 478.716685 955.418816 0.10797 5.1689E-05 0.15607 7.4714E-05 0.26405 0.0001264 478.71643051375656 83.326 0.60287 83.326 82.975 83.578 0 27 16 2 0 0 0 8448 1 16268 16268 0.62683 0 1 1464200 + 18694 24076 12229 12233 18687 18687 -0.060676303421928424 GWSFNQAF 8 Unmodified _GWSFNQAF_ 0 0 0 REV__nc|ENSG00000141956|P57071|PRDM15 REV__nc|ENSG00000141956|P57071|PRDM15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7294921875 2 478.716685 955.418816 NaN NaN NaN NaN NaN NaN NaN 94.097 1 90.106 89.606 90.606 -3.9907 0 0 0 0.21486 1 18433 18433 9.3474 0.75416 1 + 18695 24076 12229 12233 18688 18688 -0.060676303421928424 GWSKLRGD 8 Unmodified _GWSKLRGD_ 0 0 0 REV__ENSG00000101438|ENST00000217420|SLC32A1 REV__ENSG00000101438|ENST00000217420|SLC32A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.232421875 2 459.743234 917.471915 -0.47885 -0.00022015 0.21643 9.9504E-05 -0.26241 -0.00012064 459.7435128696365 37.21 0.51745 34.741 34.5 35.017 -2.4688 24 14 2 0 0 0 8448 1 6916 6916 0.12286 0 1 1155400 + 18696 14787 12230 12234 18689 18689 0.0098774744047887 GWSWAPGI 8 Unmodified _GWSWAPGI_ 0 0 0 ENST00000539960.1_1_11:60665249-60666641:-|nuORF ENST00000539960.1_1_11:60665249-60666641:-|nuORF ENST00000539960.1_1_11:60665249-60666641:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21636962890625 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 95.18 1 95.18 94.68 95.68 0 0 0 0 0.20568 1 18645 18645 20.871 1.4322 1 18697 11064 12231 12235 18690 18690 -0.02322424991234584 GWVTGASSPG 10 Unmodified _GWVTGASSPG_ 0 0 0 REV__nc|ENSG00000113108|O95704-6|APBB3 REV__nc|ENSG00000113108|O95704-6|APBB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2303771972656 2 459.719424 917.424296 0.2557 0.00011755 -0.036767 -1.6902E-05 0.21893 0.00010065 459.71940742499095 23.433 2.4683 23.433 22.788 25.256 0 232 71 5 0 0 0 0.664 1 4287 4287 14.838 14.838 1 106090000 + 18698 24002 12232 12236 18691 18691 -0.03771951550368158 GWVTGASSPG 10 Unmodified _GWVTGASSPG_ 0 0 0 REV__nc|ENSG00000113108|O95704-6|APBB3 REV__nc|ENSG00000113108|O95704-6|APBB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2340393066406 2 459.719424 917.424296 1.0203 0.00046903 -0.73518 -0.00033798 0.28507 0.00013105 459.7190947798906 25.003 2.617 23.355 22.789 25.406 -1.6482 224 75 4 0 0 0 0.664 1 4680 4680 14.838 0.93222 1 77807000 + 18699 24002 12232 12236 18692 18692 -0.03771951550368158 GWWHRRTHFW 10 Unmodified _GWWHRRTHFW_ 0 0 0 ENST00000322893.11_1_14:63483627-63512140:-|nuORF ENST00000322893.11_1_14:63483627-63512140:-|nuORF ENST00000322893.11_1_14:63483627-63512140:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26544189453125 3 490.242645 1467.70611 NaN NaN NaN NaN NaN NaN NaN 18.752 1 18.752 18.252 19.252 0 0 0 0 2.8426 1 3034 3034 0.0013812 0 1 18700 8723 12233 12237 18693 18693 -0.009039366803335724 GWWPGRLG 8 Unmodified _GWWPGRLG_ 0 0 0 REV__ENST00000597646.5_1_19:19021902-19030157:-|nuORF REV__ENST00000597646.5_1_19:19021902-19030157:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.16445 927.471521 NaN NaN NaN NaN NaN NaN NaN 115.98 1 111.5 111 112 -4.486 0 0 0 0.21486 1 22865 22865 1.6526 0 1 + 18701 23390 12234 12238 18694 18694 0.004883725112904358 GYAGPLLLLE 10 Unmodified _GYAGPLLLLE_ 0 0 0 REV__ENST00000544907.6_1_17:26671671-26671929:+|nuORF REV__ENST00000544907.6_1_17:26671671-26671929:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 349.52825927734375 3 349.202459 1044.58555 NaN NaN NaN NaN NaN NaN NaN 33.3 1 31.085 30.585 31.585 -2.2158 0 0 0 2.8426 1 5799 5799 0.013265 0 1 + 18702 22883 12235 12239 18695 18695 0.06503797762843533 GYDDGYGGEY 10 Unmodified _GYDDGYGGEY_ 0 0 0 ENSG00000112232|ENST00000281156|KHDRBS2 ENSG00000112232|ENST00000281156|KHDRBS2 ENSG00000112232|ENST00000281156|KHDRBS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7697143554688 2 548.198719 1094.38288 NaN NaN NaN NaN NaN NaN NaN 65.822 1 62.775 62.275 63.275 -3.047 0 0 0 0.22588 1 12745 12745 3.9444 0.3479 1 18703 2674 12236 12240 18696 18696 -0.1605317710034342 GYDEYSAC 8 Unmodified _GYDEYSAC_ 0 0 0 REV__nc|ENSG00000187583|Q494U1-3|PLEKHN1 REV__nc|ENSG00000187583|Q494U1-3|PLEKHN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.76495361328125 2 454.160551 906.306548 NaN NaN NaN NaN NaN NaN NaN 78.166 1 78.166 77.666 78.666 0 0 0 0 0.21486 1 15209 15209 2.8892 0 1 + 18704 19098 12237 12241 18697 18697 -0.15035272201362204 GYDGQYYGY 9 Unmodified _GYDGQYYGY_ 0 0 0 ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7703247070312 2 543.214172 1084.41379 0.10247 5.5664E-05 -1.2572 -0.00068293 -1.1547 -0.00062727 543.213505088724 93.236 1.2885 93.236 92.886 94.175 0 120 36 4 0 0 0 0.74655 1 18345 18345 21.747 7.8406 1 56187000 18705 3257 12238 12242 18698 18698 -0.12503978995459875 GYDRYSGGNY 10 Unmodified _GYDRYSGGNY_ 0 0 0 ENST00000489344.5_1_X:48433563-48435471:+|nuORF;ENST00000466764.5_1_X:48434327-48435471:+|nuORF;ENSG00000102317|ENST00000376759|RBM3 ENST00000489344.5_1_X:48433563-48435471:+|nuORF ENST00000489344.5_1_X:48433563-48435471:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.311279296875 2 576.241252 1150.46795 NaN NaN NaN NaN NaN NaN NaN 49.192 1 49.192 48.692 49.692 0 0 0 0 0.22588 1 9297 9297 9.3831 0 1 18706 2126 12239 12243 18699 18699 -0.1012638684387639 GYDWFRRRIIS 11 Unmodified _GYDWFRRRIIS_ 0 0 0 REV__ENST00000487817.1_1_1:226059677-226065160:-|nuORF REV__ENST00000487817.1_1_1:226059677-226065160:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2651062011719 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 55.749 1 52.865 52.365 53.365 -2.8837 0 0 0 0.22632 1 10673 10673 0.00056442 0 1 + 18707 19225 12240 12244 18700 18700 0.0583404873998461 GYDWWSMV 8 Unmodified _GYDWWSMV_ 0 0 0 REV__STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant REV__STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2687377929688 2 522.218203 1042.42185 -0.3264 -0.00017045 3.9177 0.0020459 3.5913 0.0018755 522.7214551369705 73.094 0.10689 69.783 69.707 69.814 -3.3107 4 2 2 0 0 0 0.73426 1 14236 14236 9.3474 0 1 559180 + 18708 17581 12241 12245 18701 18701 -0.09766123279700878 GYDWWSMV 8 Unmodified _GYDWWSMV_ 0 0 0 REV__STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant REV__STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.218203 1042.42185 -0.3264 -0.00017045 3.9177 0.0020459 3.5913 0.0018755 522.7214551369705 73.094 0.10689 69.783 69.707 69.814 -3.3107 0 0 NaN 9.3474 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 559180 + 18709 17581 12241 12245 -0.09766123279700878 GYEGNEPR 8 Unmodified _GYEGNEPR_ 0 0 0 REV__ENSG00000196700|ENST00000369888|ZNF512B REV__ENSG00000196700|ENST00000369888|ZNF512B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.53997802734375 2 461.206681 920.398809 -0.19937 -9.1952E-05 0.17186 7.9264E-05 -0.027509 -1.2687E-05 461.20668341507746 109.05 0.65482 104.6 104.26 104.91 -4.4518 30 18 2 0 0 0 8448 1 20883 20883 1.3295 0 1 918950 + 18710 19274 12242 12246 18702 18702 -0.06457426072802264 GYENQKQSSY 10 Unmodified _GYENQKQSSY_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2803344726562 2 602.267467 1202.52038 1.0341 0.0006228 -0.28551 -0.00017195 0.74859 0.00045085 602.2664905984032 65.071 0.16797 62.024 61.937 62.105 -3.047 5 4 2 0 0 0 0.79872 1 12579 12579 19.257 7.0163 1 1051900 18711 25816 12243 12247 18703 18703 -0.07277848500939399 GYEYKEPY 8 Unmodified _GYEYKEPY_ 0 0 0 tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1 tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1 tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 350.1698303222656 3 350.158919 1047.45493 NaN NaN NaN NaN NaN NaN NaN 76.782 1 73.016 72.516 73.516 -3.7664 0 0 0 0.21486 1 14545 14545 7.2892 1.5574 1 18712 26256 12244 12248 18704 18704 -0.06690217955997468 GYFKDGFVY 9 Unmodified _GYFKDGFVY_ 0 0 0 tr|U7SNG8|U7SNG8_FUSNUCitratelyasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01986PE=4SV=1 tr|U7SNG8|U7SNG8_FUSNUCitratelyasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01986PE=4SV=1 tr|U7SNG8|U7SNG8_FUSNUCitratelyasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01986PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7864990234375 2 548.260925 1094.5073 0.11028 6.0465E-05 -3.9453 -0.0021631 -3.835 -0.0021026 548.2590658538586 59.382 0.21212 56.068 55.997 56.209 -3.3139 7 5 2 0 0 0 0.77732 1 11046 11046 4.3292 0 1 646340 18713 26023 12245 12249 18705 18705 -0.03617634822353466 GYHTLHTRPVE 11 Unmodified _GYHTLHTRPVE_ 0 0 0 REV__ENSG00000121207|ENST00000336356|LRAT REV__ENSG00000121207|ENST00000336356|LRAT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2279052734375 3 437.226438 1308.65748 NaN NaN NaN NaN NaN NaN NaN 101.49 1 97.497 96.997 97.997 -3.9895 0 0 0 0.22632 1 19499 19499 0.03141 0 1 + 18714 15646 12246 12250 18706 18706 0.015501051693036061 GYIKLKKKVAI 11 Unmodified _GYIKLKKKVAI_ 0 0 0 REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7740478515625 2 630.923741 1259.83293 NaN NaN NaN NaN NaN NaN NaN 119.16 1 114.75 114.25 115.25 -4.4088 0 0 0 0.23698 1 22933 22933 1.3295 0.87119 1 + 18715 22715 12247 12251 18707 18707 0.21340551701473487 GYKAGMTHI 9 Unmodified _GYKAGMTHI_ 0 0 0 ENST00000413027.1_1_6:31248141-31248948:+|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000461967.1_1_22:39714348-39714516:-|nuORF;ENST00000484615.5_1_22:39713464-39715605:-|nuORF;ENST00000460589.5_1_22:39713464-39715412:-|nuORF;ENST00000467870.1_1_14:57445264-57445663:+|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2644958496094 2 489.247295 976.480036 -0.15324 -7.4973E-05 -0.25648 -0.00012548 -0.40972 -0.00020046 489.2471607239876 39.576 0.59254 37.027 36.719 37.311 -2.5491 36 16 3 0 0 0 0.15214 2 7368 7354;7368 43.858 20.71 1 4540100 18716 1951 12248 12252 18708;18709 18709 -0.009144416344156525 GYKAGMTHI 9 Unmodified _GYKAGMTHI_ 0 0 0 ENST00000413027.1_1_6:31248141-31248948:+|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000461967.1_1_22:39714348-39714516:-|nuORF;ENST00000484615.5_1_22:39713464-39715605:-|nuORF;ENST00000460589.5_1_22:39713464-39715412:-|nuORF;ENST00000467870.1_1_14:57445264-57445663:+|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.264404296875 2 489.247295 976.480036 0.13749 6.7267E-05 -0.63863 -0.00031245 -0.50114 -0.00024518 489.24699367146206 39.514 0.52805 37.072 36.788 37.316 -2.4419 35 14 3 0 0 0 0.11032 1 7069 7069 52.268 31.815 1 3836700 18717 1951 12248 12252 18710 18710 -0.009144416344156525 GYKAGMTHI 9 Unmodified _GYKAGMTHI_ 0 0 0 ENST00000413027.1_1_6:31248141-31248948:+|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000461967.1_1_22:39714348-39714516:-|nuORF;ENST00000484615.5_1_22:39713464-39715605:-|nuORF;ENST00000460589.5_1_22:39713464-39715412:-|nuORF;ENST00000467870.1_1_14:57445264-57445663:+|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.247295 976.480036 0.25076 0.00012268 -1.3032 -0.00063757 -1.0524 -0.00051489 489.24645149772357 37.041 0.7998 37.041 36.743 37.542 0 -0.0030823 -0.00071518 NaN 52.268 43 22 3 NaN NaN NaN NaN 0 NaN NaN 0 4258600 18718 1951 12248 12252 -0.009144416344156525 GYKAGMTHI 9 Unmodified _GYKAGMTHI_ 0 0 0 ENST00000413027.1_1_6:31248141-31248948:+|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000461967.1_1_22:39714348-39714516:-|nuORF;ENST00000484615.5_1_22:39713464-39715605:-|nuORF;ENST00000460589.5_1_22:39713464-39715412:-|nuORF;ENST00000467870.1_1_14:57445264-57445663:+|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.247295 976.480036 -0.1108 -5.4208E-05 -0.57076 -0.00027924 -0.68156 -0.00033345 489.2468836013335 39.442 0.59719 37.037 36.756 37.353 -2.4049 -0.0073504 1.4798E-06 NaN 52.268 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2503900 18719 1951 12248 12252 -0.009144416344156525 GYKTAMLNEFS 11 Unmodified _GYKTAMLNEFS_ 0 0 0 REV__ENSG00000127074|ENST00000391995|RGS13 REV__ENSG00000127074|ENST00000391995|RGS13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7493896484375 2 630.800088 1259.58562 NaN NaN NaN NaN NaN NaN NaN 119.54 1 115.02 114.52 115.52 -4.5221 0 0 0 0.23087 1 23574 23574 7.609 1.4032 1 + 18720 15875 12249 12253 18711 18711 -0.033785702994691746 GYLLFALVW 9 Unmodified _GYLLFALVW_ 0 0 0 REV__HRH3|p.P169S|1|0.51|ENSG00000101180|chr20:62216839-62216839|G/A|missense_variant REV__HRH3|p.P169S|1|0.51|ENSG00000101180|chr20:62216839-62216839|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2769165039062 2 541.307678 1080.6008 NaN NaN NaN NaN NaN NaN NaN 124.55 1 119.78 119.28 120.28 -4.7681 0 0 0 0.19657 1 23918 23918 4.897 0 1 + 18721 14766 12250 12254 18712 18712 0.06372709350694095 GYLREAASL 9 Unmodified _GYLREAASL_ 0 0 0 REV__ENSG00000142327|ENST00000270357|RNPEPL1 REV__ENSG00000142327|ENST00000270357|RNPEPL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2647399902344 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 44.989 1 44.989 44.489 45.489 0 0 0 0 0.23508 1 8446 8446 12.532 0.89125 1 + 18722 16666 12251 12255 18713 18713 0.023328834091330464 GYMNSDDTY 9 Unmodified _GYMNSDDTY_ 0 0 0 tr|U7SV88|U7SV88_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01172PE=4SV=1 tr|U7SV88|U7SV88_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01172PE=4SV=1 tr|U7SV88|U7SV88_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01172PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.276123046875 2 533.195122 1064.37569 0.13096 6.9826E-05 -3.7379 -0.001993 -3.6069 -0.0019232 533.6964992265104 128.24 0.22145 123.61 123.54 123.76 -4.6292 7 5 2 0 0 0 0.64208 1 25302 25302 0.40827 0.2854 1 512720 18723 26233 12252 12256 18714 18714 -0.15392232972430975 GYPVMIKASE 10 Unmodified _GYPVMIKASE_ 0 0 0 ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7811279296875 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 120.88 1 116.36 115.86 116.86 -4.5221 0 0 0 0.22588 1 23827 23827 10.074 0 1 18724 27 12253 12257 18715 18715 0.004749635057123669 GYQCFEHVYD 10 Unmodified _GYQCFEHVYD_ 0 0 0 REV__NAE1|p.R484Q|1|0.38|ENSG00000159593|chr16:66805821-66805821|C/T|missense_variant REV__NAE1|p.R484Q|1|0.38|ENSG00000159593|chr16:66805821-66805821|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7521362304688 2 630.753138 1259.49172 0.76225 0.00048079 -2.418 -0.0015252 -1.6558 -0.0010444 630.7521893369334 119.08 0.51895 114.43 114.35 114.87 -4.645 15 14 2 0 0 0 0.75676 1 22898 22898 3.5965 0.60125 1 1686800 + 18725 23916 12254 12258 18716 18716 -0.1276428940172991 GYTRLRRGNWR 11 Unmodified _GYTRLRRGNWR_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7380065917969 3 478.932359 1433.77525 NaN NaN NaN NaN NaN NaN NaN 139.43 1 139.43 138.93 139.93 0 0 0 0 0.22632 1 27714 27714 1.4074 1.3812 1 + 18726 18981 12255 12259 18717 18717 0.07571102548604358 GYVIKEMHYRK 11 Unmodified _GYVIKEMHYRK_ 0 0 0 CMYA5|p.I257M|1|0.36|ENSG00000164309|chr5:79729536-79729536|A/G|missense_variant CMYA5|p.I257M|1|0.36|ENSG00000164309|chr5:79729536-79729536|A/G|missense_variant CMYA5|p.I257M|1|0.36|ENSG00000164309|chr5:79729536-79729536|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 475.2580871582031 3 475.25534 1422.74419 NaN NaN NaN NaN NaN NaN NaN 83.023 1 79.324 78.824 79.824 -3.6985 0 0 0 0.22632 1 15842 15842 3.0723 0 1 18727 593 12256 12260 18718 18718 0.049727683994660765 HAAAGEPLPG 10 Unmodified _HAAAGEPLPG_ 0 0 0 REV__ENST00000458362.5_1_9:131870207-131871464:-|nuORF REV__ENST00000458362.5_1_9:131870207-131871464:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23492431640625 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 27.211 1 25.576 25.076 26.076 -1.6347 0 0 0 0.22588 1 4543 4543 11.64 0.81637 1 + 18728 20532 12257 12261 18719 18719 -0.006559587964261482 HAAELWRRL 9 Unmodified _HAAELWRRL_ 0 0 0 REV__ENST00000219070.8_1_16:55513101-55513161:+|nuORF REV__ENST00000219070.8_1_16:55513101-55513161:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.326171875 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 160.19 1 160.19 159.69 160.69 0 0 0 0 0.19636 1 32164 32164 2.4985 0 1 + 18729 20026 12258 12262 18720 18720 0.06666764931219404 HADDLREGAQY 11 Unmodified _HADDLREGAQY_ 0 0 0 ENST00000504416.5_1_5:127493760-127503560:+|nuORF;ENST00000509616.1_1_5:127493760-127507455:+|nuORF;SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2 ENST00000504416.5_1_5:127493760-127503560:+|nuORF ENST00000504416.5_1_5:127493760-127503560:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.7873840332031 3 425.530186 1273.56873 0.23853 0.0001015 0.44063 0.0001875 0.67915 0.000289 425.5302379304646 32.138 0.31315 30.111 29.869 30.182 -2.0264 13 8 2 0 0 0 0.65515 1 5561 5561 3.0723 1.1659 1 350600 18730 1338 12259 12263 18721 18721 -0.057113548610459475 HADDLREGAQY 11 Unmodified _HADDLREGAQY_ 0 0 0 ENST00000504416.5_1_5:127493760-127503560:+|nuORF;ENST00000509616.1_1_5:127493760-127507455:+|nuORF;SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2 ENST00000504416.5_1_5:127493760-127503560:+|nuORF ENST00000504416.5_1_5:127493760-127503560:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 425.530186 1273.56873 0.19064 8.1122E-05 0.37538 0.00015974 0.56602 0.00024086 425.53028438626166 32.157 0.38038 30.008 29.864 30.245 -2.1483 -0.051565 -4.5425E-05 NaN 3.0723 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 445300 18731 1338 12259 12263 -0.057113548610459475 HADIVKLIKD 10 Unmodified _HADIVKLIKD_ 0 0 0 MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant;nc|ENSG00000187391|Q86UL8-2|MAGI2;ENSG00000187391|ENST00000354212|MAGI2 MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3222045898438 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 30.372 1 28.479 27.979 28.979 -1.8928 0 0 0 0.22588 1 5204 5204 6.7232 0.51738 1 18732 7106 12260 12264 18722 18722 0.10169962948521061 HADLHRLKY 9 Unmodified _HADLHRLKY_ 0 0 0 ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4 ENST00000523958.5_1_8:23291828-23307413:-|nuORF ENST00000523958.5_1_8:23291828-23307413:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.331787109375 2 576.817264 1151.61998 0.3425 0.00019756 -0.19261 -0.0001111 0.1499 8.6462E-05 576.8171053037029 28.349 0.3112 28.349 28.18 28.491 0 11 8 2 0 0 0 0.73268 1 5018 5018 24.021 16.731 1 831050 18733 7342 12261 12265 18723 18723 0.05023058694314386 HADLHRLKY 9 Unmodified _HADLHRLKY_ 0 0 0 ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4 ENST00000523958.5_1_8:23291828-23307413:-|nuORF ENST00000523958.5_1_8:23291828-23307413:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 384.85894775390625 3 384.880602 1151.61998 -0.11638 -4.4793E-05 -0.4197 -0.00016153 -0.53608 -0.00020633 384.8804549301317 30.383 1.0542 28.309 28.007 29.061 -2.0743 45 29 2 0 0 0 0.10537 1 5185 5185 76.825 68.073 1 11167000 18734 7342 12261 12265 18724 18724 0.05023058694314386 HADLHRLKY 9 Unmodified _HADLHRLKY_ 0 0 0 ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4 ENST00000523958.5_1_8:23291828-23307413:-|nuORF ENST00000523958.5_1_8:23291828-23307413:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3223876953125 2 576.817264 1151.61998 0.55244 0.00031866 -0.55204 -0.00031843 0.00040001 2.3073E-07 576.8169320366115 30.383 0.24562 28.309 28.183 28.429 -2.0743 8 6 2 0 0 0 0.81703 1 5206 5206 10.074 5.7447 1 347100 18735 7342 12261 12265 18725 18725 0.05023058694314386 HADLHRLKY 9 Unmodified _HADLHRLKY_ 0 0 0 ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4 ENST00000523958.5_1_8:23291828-23307413:-|nuORF ENST00000523958.5_1_8:23291828-23307413:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 384.880602 1151.61998 -0.065264 -2.5119E-05 -0.25216 -9.7053E-05 -0.31743 -0.00012217 384.88052874219693 28.351 0.558 28.351 28.077 28.635 0 -0.0061996 0.0004008 NaN 76.825 46 15 4 NaN NaN NaN NaN 0 NaN NaN 0 11011000 18736 7342 12261 12265 0.05023058694314386 HADLHRLKY 9 Unmodified _HADLHRLKY_ 0 0 0 ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4 ENST00000523958.5_1_8:23291828-23307413:-|nuORF ENST00000523958.5_1_8:23291828-23307413:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 384.880602 1151.61998 0.24545 9.4471E-05 -0.81634 -0.0003142 -0.57089 -0.00021972 384.88033063873394 30.461 0.88531 28.345 27.975 28.861 -2.1167 -0.013074 -0.00025062 NaN 76.825 41 24 2 NaN NaN NaN NaN 0 NaN NaN 0 12660000 18737 7342 12261 12265 0.05023058694314386 HADLHRLKY 9 Unmodified _HADLHRLKY_ 0 0 0 ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4 ENST00000523958.5_1_8:23291828-23307413:-|nuORF ENST00000523958.5_1_8:23291828-23307413:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 384.880602 1151.61998 0.32629 0.00012558 -0.81809 -0.00031487 -0.4918 -0.00018929 384.8803137370215 30.319 0.98521 28.426 28.101 29.086 -1.8928 0.068404 -0.00025264 NaN 76.825 58 27 4 NaN NaN NaN NaN 0 NaN NaN 0 13969000 18738 7342 12261 12265 0.05023058694314386 HADVSNQLY 9 Unmodified _HADVSNQLY_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.681396484375 2 523.748713 1045.48287 0.51522 0.00026985 -1.5604 -0.00081724 -1.0451 -0.00054739 523.7478527999314 46.242 1.108 46.242 45.518 46.626 0 100 31 4 0 0 0 0.029847 1 8728 8728 88.904 44.497 1 29202000 18739 4700 12262 12266 18726 18726 -0.03804894975883144 HADVSNQLY 9 Unmodified _HADVSNQLY_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6930541992188 2 523.748713 1045.48287 -0.27949 -0.00014638 -0.94799 -0.00049651 -1.2275 -0.00064289 523.7482401900105 49.098 1.0815 46.217 45.681 46.763 -2.8811 99 30 5 0 0 0 0.034704 1 9281 9281 78.149 33.742 1 65901000 18740 4700 12262 12266 18727 18727 -0.03804894975883144 HADVSNQLY 9 Unmodified _HADVSNQLY_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6948852539062 2 523.748713 1045.48287 -0.51727 -0.00027092 -0.71949 -0.00037683 -1.2368 -0.00064775 523.7483302932651 49.228 1.0392 46.229 45.65 46.689 -2.999 92 29 4 0 0 0 0.031632 1 8981 8981 81.613 37.206 1 55022000 18741 4700 12262 12266 18728 18728 -0.03804894975883144 HADVSNQLY 9 Unmodified _HADVSNQLY_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6952514648438 2 523.748713 1045.48287 -0.025957 -1.3595E-05 -1.2135 -0.00063559 -1.2395 -0.00064918 523.7480289576076 49.243 1.2114 46.236 45.798 47.009 -3.0068 96 34 4 0 0 0 0.035225 1 9026 9026 78.149 39.998 1 46808000 18742 4700 12262 12266 18729 18729 -0.03804894975883144 HAEEKPYQCV 10 Unmodified _HAEEKPYQCV_ 0 0 0 ENST00000399070.3_2_18:32886564-32887857:+|nuORF ENST00000399070.3_2_18:32886564-32887857:+|nuORF ENST00000399070.3_2_18:32886564-32887857:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3014526367188 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 81.689 1 78.132 77.632 78.632 -3.557 0 0 0 0.22518 1 15957 15957 22.736 2.3217 1 18743 9491 12263 12267 18730 18730 -0.054160101307388686 HAEEKPYQCV 10 Unmodified _HAEEKPYQCV_ 0 0 0 ENST00000399070.3_2_18:32886564-32887857:+|nuORF ENST00000399070.3_2_18:32886564-32887857:+|nuORF ENST00000399070.3_2_18:32886564-32887857:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.276611328125 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 81.727 1 78.17 77.67 78.67 -3.557 0 0 0 0.22588 1 15965 15965 13.042 0.51092 1 18744 9491 12263 12267 18731 18731 -0.054160101307388686 HAEEKPYQCV 10 Unmodified _HAEEKPYQCV_ 0 0 0 ENST00000399070.3_2_18:32886564-32887857:+|nuORF ENST00000399070.3_2_18:32886564-32887857:+|nuORF ENST00000399070.3_2_18:32886564-32887857:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2782592773438 2 602.27678 1202.53901 0.39438 0.00023752 0.5346 0.00032198 0.92898 0.0005595 602.2772314219422 81.959 0.37084 78.12 77.927 78.298 -3.8392 13 10 3 0 0 0 0.72406 1 15596 15596 8.7454 0 1 1397200 18745 9491 12263 12267 18732 18732 -0.054160101307388686 HAEEKPYQCV 10 Unmodified _HAEEKPYQCV_ 0 0 0 ENST00000399070.3_2_18:32886564-32887857:+|nuORF ENST00000399070.3_2_18:32886564-32887857:+|nuORF ENST00000399070.3_2_18:32886564-32887857:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2767944335938 2 602.27678 1202.53901 -0.080167 -4.8283E-05 1.5531 0.00093538 1.4729 0.00088709 602.2780001630379 81.968 0.41381 78.28 77.945 78.358 -3.6879 13 11 2 0 0 0 0.6817 1 15616 15616 13.042 0.80181 1 1566000 18746 9491 12263 12267 18733 18733 -0.054160101307388686 HAELTKMV 8 Unmodified _HAELTKMV_ 0 0 0 REV__nc|ENSG00000163539|O75122|CLASP2 REV__nc|ENSG00000163539|O75122|CLASP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1676025390625 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 40.74 1 38.2 37.7 38.7 -2.5398 0 0 0 0.22847 1 7306 7306 10.074 9.3925 1 + 18747 13441 12264 12268 18734 18734 0.018144425083619353 HAETALLMEKT 11 Unmodified _HAETALLMEKT_ 0 0 0 USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7575073242188 2 622.321188 1242.62782 NaN NaN NaN NaN NaN NaN NaN 174.71 1 169.82 169.32 170.32 -4.8916 0 0 0 0.22632 1 34791 34791 0.094841 0 1 18748 26563 12265 12269 18735 18735 0.01621405108903673 HAGCTSVAK 9 Unmodified _HAGCTSVAK_ 0 0 0 REV__OR5H6|p.L271Sfs*18|1|0.22|ENSG00000230301|chr3:98265091-98265091|C/-|frameshift_variant REV__OR5H6|p.L271Sfs*18|1|0.22|ENSG00000230301|chr3:98265091-98265091|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2158508300781 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 117.4 1 112.79 112.29 113.29 -4.6106 0 0 0 0.23508 1 22529 22529 11.64 0.81637 1 + 18749 19744 12266 12270 18736 18736 -0.023875877026057424 HAHGAGVVGN 10 Unmodified _HAHGAGVVGN_ 0 0 0 REV__ENST00000216034.5_1_22:39080062-39080293:+|nuORF REV__ENST00000216034.5_1_22:39080062-39080293:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.234375 2 459.730658 917.446762 -0.072714 -3.3429E-05 0.50528 0.00023229 0.43256 0.00019886 459.7301495691557 40.705 0.94946 38.165 37.78 38.73 -2.5398 43 26 2 0 0 0 0.23583 1 7285 7285 0.84494 0 1 2320200 + 18750 20003 12267 12271 18737 18737 -0.015263073620872092 HAIDPHIA 8 Unmodified _HAIDPHIA_ 0 0 0 REV__ENSG00000176531|ENST00000292140|PHLDB3 REV__ENSG00000176531|ENST00000292140|PHLDB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23138427734375 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 153.86 1 153.86 153.36 154.36 0 0 0 0 0.23366 1 30834 30834 0.25148 0 1 + 18751 18513 12268 12272 18738 18738 0.009123624117592044 HAINRGIF 8 Unmodified _HAINRGIF_ 0 0 0 nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2;ENSG00000170482|ENST00000348729|SLC23A1;nc|ENSG00000170482|Q9UHI7-2|SLC23A1 nc|ENSG00000089057|Q9UGH3-2|SLC23A2 nc|ENSG00000089057|Q9UGH3-2|SLC23A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 464.1271057128906 2 464.261594 926.508634 0.062474 2.9004E-05 -0.11373 -5.2801E-05 -0.051258 -2.3797E-05 464.26150109264523 19.443 1.4025 18.046 17.708 19.111 -1.3966 68 39 3 0 0 0 1.0095 1 3276 3276 5.7604 0.52976 1 9222700 18752 1747 12269 12273 18739 18739 0.04244044057031715 HAIYEEITA 9 Unmodified _HAIYEEITA_ 0 0 0 PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1;ENST00000534803.1_1_11:35474916-35547133:-|nuORF PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6786499023438 2 523.761289 1045.50803 -0.024235 -1.2693E-05 0.076519 4.0078E-05 0.052285 2.7385E-05 523.7613379623145 92.312 1.0462 92.312 91.805 92.851 0 111 29 5 0 0 0 0.049627 1 18025 18025 71.134 9.7761 1 61306000 18753 4769 12270 12274 18740 18740 -0.01290840173351171 HAIYEEITA 9 Unmodified _HAIYEEITA_ 0 0 0 PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1;ENST00000534803.1_1_11:35474916-35547133:-|nuORF PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6964721679688 2 523.761289 1045.50803 -0.13097 -6.8598E-05 0.15431 8.082E-05 0.023334 1.2221E-05 523.761376916148 96.384 0.98957 92.334 91.828 92.818 -4.0496 129 28 6 0 0 0 0.019538 1 18936 18936 92.822 31.465 1 91282000 18754 4769 12270 12274 18741 18741 -0.01290840173351171 HAIYEEITA 9 Unmodified _HAIYEEITA_ 0 0 0 PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1;ENST00000534803.1_1_11:35474916-35547133:-|nuORF PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6915283203125 2 523.761289 1045.50803 -0.41409 -0.00021689 0.45834 0.00024006 0.044242 2.3172E-05 523.7615578904365 96.492 1.0753 92.257 91.776 92.851 -4.2348 121 30 6 0 0 0 0.029966 3 18433 18433;18454;18481 81.613 20.256 1 69748000 18755 4769 12270 12274 18742;18743;18744 18742 -0.01290840173351171 HAIYEEITA 9 Unmodified _HAIYEEITA_ 0 0 0 PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1;ENST00000534803.1_1_11:35474916-35547133:-|nuORF PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6780395507812 2 523.761289 1045.50803 0.019927 1.0437E-05 -0.0019224 -1.0069E-06 0.018004 9.43E-06 523.7612718656995 96.203 1.2411 92.322 91.785 93.026 -3.881 122 35 5 0 0 0 0.40602 1 18559 18559 25.399 8.457 1 80495000 18756 4769 12270 12274 18745 18745 -0.01290840173351171 HALKRGAA 8 Unmodified _HALKRGAA_ 0 0 0 REV__GSR|p.P420Lfs*18|1|0.58|ENSG00000104687|chr8:30681956-30681956|G/-|frameshift_variant REV__GSR|p.P420Lfs*18|1|0.58|ENSG00000104687|chr8:30681956-30681956|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 412.250732421875 2 412.248486 822.48242 NaN NaN NaN NaN NaN NaN NaN 27.58 1 25.798 25.298 26.298 -1.7821 0 0 0 0.21486 1 4906 4906 6.3541 0 1 + 18757 14932 12271 12275 18746 18746 0.06407774885565232 HALLEWLAE 9 Unmodified _HALLEWLAE_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2815551757812 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 139.47 1 134.83 134.33 135.33 -4.6439 0 0 0 0.23508 1 27534 27534 12.532 0.89125 1 18758 4896 12272 12276 18747 18747 0.023337429602634074 HALLRRRWLLP 11 Unmodified _HALLRRRWLLP_ 0 0 0 ADAMTSL4|p.R243Qfs*58|1|0.26|ENSG00000143382|chr1:150553712-150553713|-/C|frameshift_variant ADAMTSL4|p.R243Qfs*58|1|0.26|ENSG00000143382|chr1:150553712-150553713|-/C|frameshift_variant ADAMTSL4|p.R243Qfs*58|1|0.26|ENSG00000143382|chr1:150553712-150553713|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 716.6416625976562 2 715.946405 1429.87826 0.71681 0.0005132 0.49248 0.00035259 1.2093 0.00086579 715.9456038219176 167.48 0.14282 162.59 162.49 162.64 -4.8916 5 3 2 0 0 0 0.66265 1 32949 32949 0.026206 0.02025 1 16713000 18759 67 12273 12277 18748 18748 0.180512150072218 HALMVFRVA 9 Unmodified _HALMVFRVA_ 0 0 0 ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4 ENST00000482171.5_1_2:130912606-130913705:-|nuORF ENST00000482171.5_1_2:130912606-130913705:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.261474609375 2 522.294579 1042.57461 NaN NaN NaN NaN NaN NaN NaN 136.03 1 131.39 130.89 131.89 -4.6399 0 0 0 0.23508 1 26839 26839 7.9102 0.62092 1 18760 4029 12274 12278 18749 18749 0.05502116907587151 HANAGRTKI 9 Unmodified _HANAGRTKI_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1676940917969 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 80.414 1 76.904 76.404 77.404 -3.5102 0 0 0 0.23508 1 15704 15704 1.0715 0 1 18761 2573 12275 12279 18750 18750 0.051305275974073083 HANAGRTKI 9 Unmodified _HANAGRTKI_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.14666748046875 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 104.19 1 99.967 99.467 100.47 -4.2183 0 0 0 0.23508 1 20490 20490 1.0715 0 1 18762 2573 12275 12279 18751 18751 0.051305275974073083 HANAGRTKI 9 Unmodified _HANAGRTKI_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1958312988281 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 133.59 1 128.95 128.45 129.45 -4.6399 0 0 0 0.23508 1 26342 26342 1.0715 0 1 18763 2573 12275 12279 18752 18752 0.051305275974073083 HANAGRTKI 9 Unmodified _HANAGRTKI_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1845397949219 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 83.853 1 80.155 79.655 80.655 -3.6985 0 0 0 0.23508 1 16015 16015 1.0715 0 1 18764 2573 12275 12279 18753 18753 0.051305275974073083 HAPGPGIL 8 Unmodified _HAPGPGIL_ 0 0 0 REV__ENST00000482556.5_1_20:47241953-47242436:-|nuORF REV__ENST00000482556.5_1_20:47241953-47242436:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2190246582031 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 169.79 1 165 164.5 165.5 -4.7898 0 0 0 0.2396 1 34410 34410 0.0082765 0 1 + 18765 22192 12276 12280 18754 18754 0.03337878871388966 HAPPPPPH 8 Unmodified _HAPPPPPH_ 0 0 0 REV__nc|ENSG00000124920|Q9Y2G1-2|MYRF REV__nc|ENSG00000124920|Q9Y2G1-2|MYRF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25311279296875 2 425.221937 848.429321 0.011624 4.943E-06 0.49454 0.00021029 0.50617 0.00021523 425.2221005886349 142.74 0.74945 137.84 137.38 138.13 -4.8982 32 20 2 0 0 0 0.83271 1 27515 27515 2.8892 0 1 2169000 + 18766 24023 12277 12281 18755 18755 -0.0009560289711316727 HAQASPPNP 9 Unmodified _HAQASPPNP_ 0 0 0 REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2265625 2 459.725041 917.435529 0.51668 0.00023753 -0.3816 -0.00017543 0.13508 6.21E-05 459.7248691124994 44.62 0.94499 44.62 44.254 45.199 0 52 26 3 0 0 0 0.6329 1 8335 8335 10.824 1.4765 1 5066000 + 18767 16390 12278 12282 18756 18756 -0.026491294562447365 HAQASPPNP 9 Unmodified _HAQASPPNP_ 0 0 0 REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2271423339844 2 459.725041 917.435529 -0.041274 -1.8975E-05 0.23904 0.00010989 0.19777 9.0918E-05 459.725090508121 47.758 0.60172 44.816 44.615 45.216 -2.9421 31 16 3 0 0 0 0.6329 1 8743 8743 10.824 0.64053 1 3047000 + 18768 16390 12278 12282 18757 18757 -0.026491294562447365 HAQASPPNP 9 Unmodified _HAQASPPNP_ 0 0 0 REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.725041 917.435529 -0.041274 -1.8975E-05 0.23904 0.00010989 0.19777 9.0918E-05 459.725090508121 47.758 0.60172 44.816 44.615 45.216 -2.9421 0.020285 -9.934E-05 NaN 10.824 31 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3047000 + 18769 16390 12278 12282 -0.026491294562447365 HARLREFWMRY 11 Unmodified _HARLREFWMRY_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000473805.5_1_1:52281970-52293513:-|nuORF ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2676391601562 3 522.269983 1563.78812 NaN NaN NaN NaN NaN NaN NaN 121.61 1 121.61 121.11 122.11 0 0 0 0 0.22632 1 23972 23972 0.026206 0 1 18770 1581 12279 12283 18758 18758 0.028777976164747088 HARLREFWMRY 11 Unmodified _HARLREFWMRY_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000473805.5_1_1:52281970-52293513:-|nuORF ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2696533203125 3 522.269983 1563.78812 NaN NaN NaN NaN NaN NaN NaN 144.14 1 139.07 138.57 139.57 -5.0671 0 0 0 0.22632 1 27795 27795 0.00056442 0 1 18771 1581 12279 12283 18759 18759 0.028777976164747088 HARLREFWMRY 11 Unmodified _HARLREFWMRY_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000473805.5_1_1:52281970-52293513:-|nuORF ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27099609375 3 522.269983 1563.78812 NaN NaN NaN NaN NaN NaN NaN 141.22 1 136.35 135.85 136.85 -4.8678 0 0 0 0.22632 1 27248 27248 0.026206 0 1 18772 1581 12279 12283 18760 18760 0.028777976164747088 HARTWFFFLLM 11 Unmodified _HARTWFFFLLM_ 0 0 0 REV__ENST00000271375.6_1_1:168212468-168212570:+|nuORF REV__ENST00000271375.6_1_1:168212468-168212570:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25799560546875 3 490.256792 1467.74855 NaN NaN NaN NaN NaN NaN NaN 51.71 1 51.71 51.21 52.21 0 0 0 0 0.22632 1 9817 9817 1.4551 0 1 + 18773 20272 12280 12284 18761 18761 0.03338277613056562 HASFLINN 8 Unmodified _HASFLINN_ 0 0 0 tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1 tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1 tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22802734375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 98.544 1 94.412 93.912 94.912 -4.1326 0 0 0 0.23664 1 19350 19350 3.2813 0 1 18774 26511 12281 12285 18762 18762 0.00036345066178000707 HASSKVFRY 9 Unmodified _HASSKVFRY_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7924194335938 2 547.790715 1093.56688 NaN NaN NaN NaN NaN NaN NaN 7.9971 1 7.9971 7.4971 8.4971 0 0 0 0 0.23508 1 789 789 0.52476 0 1 18775 6323 12282 12286 18763 18763 0.023836809116801305 HATSGKGSAL 10 Unmodified _HATSGKGSAL_ 0 0 0 REV__ENSG00000010017|ENST00000011619|RANBP9 REV__ENSG00000010017|ENST00000011619|RANBP9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16522216796875 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 12.772 1 12.772 12.272 13.272 0 0 0 0 2.8426 1 1802 1802 0.043787 0 1 + 18776 13915 12283 12287 18764 18764 0.010754262322848263 HAVFHQQL 8 Unmodified _HAVFHQQL_ 0 0 0 REV__nc|ENSG00000278259|Q96H55-3|MYO19 REV__nc|ENSG00000278259|Q96H55-3|MYO19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2572021484375 2 490.259051 978.503549 NaN NaN NaN NaN NaN NaN NaN 117.85 1 113.34 112.84 113.84 -4.502 0 0 0 0.22636 1 23229 23229 4.2837 3.9041 1 + 18777 19947 12284 12288 18765 18765 0.013437401944315752 HAVLHWAQ 8 Unmodified _HAVLHWAQ_ 0 0 0 REV__ENSG00000053371|ENST00000235835|AKR7A2 REV__ENSG00000053371|ENST00000235835|AKR7A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25390625 2 481.253769 960.492984 NaN NaN NaN NaN NaN NaN NaN 59.476 1 59.476 58.976 59.976 0 0 0 0 0.21486 1 11396 11396 12.532 1.7076 1 + 18778 14097 12285 12289 18766 18766 0.011157575399806774 HAVQFNSA 8 Unmodified _HAVQFNSA_ 0 0 0 ENSG00000152954|ENST00000378491|NRSN1 ENSG00000152954|ENST00000378491|NRSN1 ENSG00000152954|ENST00000378491|NRSN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2164306640625 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 117.19 1 112.83 112.33 113.33 -4.3585 0 0 0 0.21486 1 22556 22556 11.64 3.047 1 18779 4949 12286 12290 18767 18767 -0.027245144849530334 HCCCCGRE 8 Unmodified _HCCCCGRE_ 0 0 0 ENST00000460043.5_1_20:31973484-31989268:-|nuORF ENST00000460043.5_1_20:31973484-31989268:-|nuORF ENST00000460043.5_1_20:31973484-31989268:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.03936767578125 3 304.097737 909.271382 NaN NaN NaN NaN NaN NaN NaN 28.528 1 28.528 28.028 29.028 0 0 0 0 0.21486 1 5068 5068 0.35063 0.35063 1 18780 10051 12287 12291 18768 18768 -0.1868825280614601 HCCIRLLRK 9 Unmodified _HCCIRLLRK_ 0 0 0 ENST00000392396.7_2_3:195785499-195787097:-|nuORF ENST00000392396.7_2_3:195785499-195787097:-|nuORF ENST00000392396.7_2_3:195785499-195787097:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2107238769531 3 381.219684 1140.63722 -0.55422 -0.00021128 0.82935 0.00031617 0.27514 0.00010489 381.21992726070255 27.101 0.24199 25.179 24.984 25.226 -1.9222 11 6 2 0 0 0 0.72996 1 4483 4483 4.897 0 1 966290 18781 9373 12288 12292 18769 18769 0.07252939704130767 HCCWEGVLAGW 11 Unmodified _HCCWEGVLAGW_ 0 0 0 REV__ENST00000505226.1_1_6:83748090-83767722:-|nuORF REV__ENST00000505226.1_1_6:83748090-83767722:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.765869140625 2 630.768068 1259.52158 NaN NaN NaN NaN NaN NaN NaN 171.5 1 166.58 166.08 167.08 -4.9149 0 0 0 0.22632 1 33968 33968 0.58532 0 1 + 18782 15552 12289 12293 18770 18770 -0.09779628937394591 HCDSCHCC 8 Unmodified _HCDSCHCC_ 0 0 0 ENSG00000173320|ENST00000308497|STOX2;STOX2|p.F266Ifs*11|3|0.43|ENSG00000173320|chr4:184009626-184009627|-/A|frameshift_variant;nc|ENSG00000173320|Q9P2F5-2|STOX2 ENSG00000173320|ENST00000308497|STOX2 ENSG00000173320|ENST00000308497|STOX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7610168457031 2 454.119325 906.224098 NaN NaN NaN NaN NaN NaN NaN 99.988 1 95.828 95.328 96.328 -4.1594 0 0 0 0.2396 1 19647 19647 0 0 1 18783 6287 12290 12294 18771 18771 -0.2327653207714775 HCDSCHCC 8 Unmodified _HCDSCHCC_ 0 0 0 ENSG00000173320|ENST00000308497|STOX2;STOX2|p.F266Ifs*11|3|0.43|ENSG00000173320|chr4:184009626-184009627|-/A|frameshift_variant;nc|ENSG00000173320|Q9P2F5-2|STOX2 ENSG00000173320|ENST00000308497|STOX2 ENSG00000173320|ENST00000308497|STOX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7610168457031 2 454.119325 906.224098 NaN NaN NaN NaN NaN NaN NaN 100 1 95.843 95.343 96.343 -4.1594 0 0 0 0.21486 1 19650 19650 0 0 1 18784 6287 12290 12294 18772 18772 -0.2327653207714775 HCDSDDDCGD 10 Unmodified _HCDSDDDCGD_ 0 0 0 LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.I3028Nfs*2|1|0.39|ENSG00000168702|chr2:140492645-140492646|-/T|frameshift_variant;LRP1B|p.N3100Kfs*6|1|0.21|ENSG00000168702|chr2:140485468-140485469|-/T|frameshift_variant;LRP1B|p.Y3120*|1|0.16|ENSG00000168702|chr2:140485402-140485408|AGTAGGG/-|frameshift_variant;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant;LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant;LRP1B|p.T2640Pfs*5|1|0.12|ENSG00000168702|chr2:140525952-140525952|T/-|frameshift_variant;LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2674560546875 2 541.145303 1080.27605 NaN NaN NaN NaN NaN NaN NaN 36.397 1 34.049 33.549 34.549 -2.3479 0 0 0 2.8426 1 6434 6434 0 0 1 18785 5927 12291 12295 18773 18773 -0.2608741864869444 HCEADELD 8 Unmodified _HCEADELD_ 0 0 0 SYNE1|p.R6089H|1|0.28|ENSG00000131018|chr6:152281922-152281922|C/T|missense_variant SYNE1|p.R6089H|1|0.28|ENSG00000131018|chr6:152281922-152281922|C/T|missense_variant SYNE1|p.R6089H|1|0.28|ENSG00000131018|chr6:152281922-152281922|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.1602478027344 3 311.120247 930.338911 -0.09798 -3.0484E-05 0.36724 0.00011426 0.26926 8.3771E-05 311.1208170337568 100.8 0.88283 100.8 100.38 101.26 0 54 24 3 0 0 0 1.0277 1 19842 19842 0 0 1 3347200 18786 25805 12292 12296 18774 18774 -0.12904484798343674 HCGDDEDCF 9 Unmodified _HCGDDEDCF_ 0 0 0 ENSG00000177202|ENST00000321762|SPACA4 ENSG00000177202|ENST00000321762|SPACA4 ENSG00000177202|ENST00000321762|SPACA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 348.1070251464844 3 347.440992 1039.30115 -0.28614 -9.9416E-05 -0.7861 -0.00027312 -1.0722 -0.00037254 347.4408423452965 24.264 0.44823 24.264 24.167 24.615 0 22 12 2 0 0 0 0.60489 1 4214 4214 2.4985 2.4985 1 3035600 18787 6501 12293 12297 18775 18775 -0.21693319055475513 HCGQCVVAHN 10 Unmodified _HCGQCVVAHN_ 0 0 0 REV__nc|ENSG00000135269|Q9UGI8-2|TES REV__nc|ENSG00000135269|Q9UGI8-2|TES MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 534.2282104492188 2 534.22911 1066.44367 NaN NaN NaN NaN NaN NaN NaN 42.486 1 39.767 39.267 40.267 -2.7191 0 0 0 2.8426 1 7949 7949 0.013265 0 1 + 18788 16254 12294 12298 18776 18776 -0.08689641802766346 HCIKEIQSE 9 Unmodified _HCIKEIQSE_ 0 0 0 nc|ENSG00000185261|Q8IV33-3|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;ENSG00000185261|ENST00000682413|KIAA0825;KIAA0825|p.D102*|1|0.15|ENSG00000185261|chr5:94520908-94520914|ACAAATC/-|frameshift_variant;nc|ENSG00000185261|Q8IV33-2|KIAA0825;KIAA0825|p.F767Lfs*27|2|0.33|ENSG00000185261|chr5:94453015-94453015|A/-|frameshift_variant nc|ENSG00000185261|Q8IV33-3|KIAA0825 nc|ENSG00000185261|Q8IV33-3|KIAA0825 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7796630859375 2 543.766049 1085.51754 NaN NaN NaN NaN NaN NaN NaN 162.16 1 157.02 156.52 157.52 -5.1438 0 0 0 0.19636 1 31500 31500 2.4985 2.4951 1 18789 6972 12295 12299 18777 18777 -0.021793951594418104 HCKCIIWY 8 Unmodified _HCKCIIWY_ 0 0 0 STARD6|p.I54Mfs*62|1|0.11|ENSG00000174448|chr18:54337230-54337231|-/AC|frameshift_variant STARD6|p.I54Mfs*62|1|0.11|ENSG00000174448|chr18:54337230-54337231|-/AC|frameshift_variant STARD6|p.I54Mfs*62|1|0.11|ENSG00000174448|chr18:54337230-54337231|-/AC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26123046875 2 533.254065 1064.49358 0.15346 8.1832E-05 -1.322 -0.00070499 -1.1686 -0.00062316 533.7546450105893 25.137 0.34412 25.137 24.98 25.324 0 15 9 2 0 0 0 0.72861 1 4326 4326 10.183 0.83596 1 970550 18790 25795 12296 12300 18778 18778 -0.036089071268179396 HCNQEQLG 8 Unmodified _HCNQEQLG_ 0 0 0 REV__ENST00000426282.6_1_22:45530585-45559517:-|nuORF REV__ENST00000426282.6_1_22:45530585-45559517:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1636047363281 3 310.136231 927.386864 NaN NaN NaN NaN NaN NaN NaN 150.3 1 145.1 144.6 145.6 -5.1994 0 0 0 0.2396 1 29123 29123 0.12286 0 1 + 18791 21566 12297 12301 18779 18779 -0.07973366087639988 HCNQEQLG 8 Unmodified _HCNQEQLG_ 0 0 0 REV__ENST00000426282.6_1_22:45530585-45559517:-|nuORF REV__ENST00000426282.6_1_22:45530585-45559517:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647644042969 3 310.136231 927.386864 NaN NaN NaN NaN NaN NaN NaN 151.27 1 146.09 145.59 146.59 -5.1759 0 0 0 0.2396 1 29326 29326 0.12286 0 1 + 18792 21566 12297 12301 18780 18780 -0.07973366087639988 HCPCPYST 8 Unmodified _HCPCPYST_ 0 0 0 nc|ENSG00000148824|Q9BT17-2|MTG1;ENST00000460848.5_1_10:135207724-135215322:+|nuORF nc|ENSG00000148824|Q9BT17-2|MTG1 nc|ENSG00000148824|Q9BT17-2|MTG1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 303.1787109375 3 303.119413 906.336409 NaN NaN NaN NaN NaN NaN NaN 139.28 1 134.63 134.13 135.13 -4.6439 0 0 0 0.21486 1 27497 27497 0.45834 0 1 18793 10059 12298 12302 18781 18781 -0.12050611736992778 HCPGFVLR 8 Unmodified _HCPGFVLR_ 0 0 0 REV__ENST00000358933.9_1_16:67906988-67910776:+|nuORF REV__ENST00000358933.9_1_16:67906988-67910776:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1679382324219 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 70.436 1 67.187 66.687 67.687 -3.2492 0 0 0 0.21486 1 13705 13705 9.3831 2.0939 1 + 18794 20844 12299 12303 18782 18782 0.008252992936263581 HCPHCCSS 8 Unmodified _HCPHCCSS_ 0 0 0 ENST00000396504.6_1_22:41923998-41924697:-|nuORF ENST00000396504.6_1_22:41923998-41924697:-|nuORF ENST00000396504.6_1_22:41923998-41924697:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2316589355469 2 437.143658 872.272763 NaN NaN NaN NaN NaN NaN NaN 15.237 1 14.123 13.623 14.623 -1.1142 0 0 0 0.2396 1 2337 2337 0.12286 0 1 18795 9447 12300 12304 18783 18783 -0.16848295445743133 HCRSTPRPGA 10 Unmodified _HCRSTPRPGA_ 0 0 0 REV__ENST00000575630.1_1_16:3283648-3283846:-|nuORF REV__ENST00000575630.1_1_16:3283648-3283846:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.270751953125 2 541.269624 1080.5247 NaN NaN NaN NaN NaN NaN NaN 131.91 1 131.91 131.41 132.41 0 0 0 0 2.8426 1 26072 26072 10.151 2.6735 1 + 18796 21623 12301 12305 18784 18784 -0.012346177683411952 HCSGRPIPGSA 11 Unmodified _HCSGRPIPGSA_ 0 0 0 nc|ENSG00000186474|Q9UKR0-3|KLK12 nc|ENSG00000186474|Q9UKR0-3|KLK12 nc|ENSG00000186474|Q9UKR0-3|KLK12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2810668945312 2 541.264007 1080.51346 NaN NaN NaN NaN NaN NaN NaN 63.711 1 60.296 59.796 60.796 -3.4158 0 0 0 0.21872 1 11906 11906 14.405 0.49933 1 18797 12521 12302 12306 18785 18785 -0.0235743986252146 HCSNDDEDNC 10 Unmodified _HCSNDDEDNC_ 0 0 0 ENSG00000136158|ENST00000377104|SPRY2 ENSG00000136158|ENST00000377104|SPRY2 ENSG00000136158|ENST00000377104|SPRY2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3323974609375 2 576.171852 1150.32915 NaN NaN NaN NaN NaN NaN NaN 161.31 1 156.52 156.02 157.02 -4.7952 0 0 0 2.8426 1 32080 32080 0.13989 0 1 18798 3989 12303 12307 18786 18786 -0.24000040866030758 HCVDLESA 8 Unmodified _HCVDLESA_ 0 0 0 RNF207|p.H384Tfs*6|1|0.56|ENSG00000158286|chr1:6211904-6211904|C/-|frameshift_variant;ENSG00000158286|ENST00000377939|RNF207 RNF207|p.H384Tfs*6|1|0.56|ENSG00000158286|chr1:6211904-6211904|C/-|frameshift_variant RNF207|p.H384Tfs*6|1|0.56|ENSG00000158286|chr1:6211904-6211904|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2292785644531 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 67.333 1 64.224 63.724 64.724 -3.1086 0 0 0 0.23749 1 13058 13058 0.12286 0 1 18799 5159 12304 12308 18787 18787 -0.07147286693464139 HCYWKYLIVDE 11 Unmodified _HCYWKYLIVDE_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS nc|ENSG00000119969|Q9NRZ9-4|HELLS nc|ENSG00000119969|Q9NRZ9-4|HELLS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26214599609375 3 490.235834 1467.68567 -0.24415 -0.00011969 0.24434 0.00011979 0.00018985 9.3073E-08 490.2359480111848 16.676 0.28128 15.46 15.32 15.601 -1.2159 12 7 3 0 0 0 0.81901 1 2630 2630 1.1098 0 1 346600 18800 3110 12305 12309 18788 18788 -0.029463329656664428 HCYWKYLIVDE 11 Unmodified _HCYWKYLIVDE_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS nc|ENSG00000119969|Q9NRZ9-4|HELLS nc|ENSG00000119969|Q9NRZ9-4|HELLS MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 490.235834 1467.68567 0.090728 4.4478E-05 0.20578 0.00010088 0.29651 0.00014536 490.57024718788784 15.455 0.24528 15.455 15.294 15.539 0 -0.0029194 -2.6125E-05 NaN 1.1098 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 510000 18801 3110 12305 12309 -0.029463329656664428 HDALTNIVK 9 Unmodified _HDALTNIVK_ 0 0 0 REV__ENSG00000254852|ENST00000529166|NPIPA2 REV__ENSG00000254852|ENST00000529166|NPIPA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0618591308594 3 337.525825 1009.55564 -0.37344 -0.00012605 0.38165 0.00012882 0.0082063 2.7698E-06 337.52595050722755 35.54 1.8494 33.264 32.239 34.088 -2.2766 113 52 4 0 0 0 0.87497 1 6244 6244 8.1555 5.4203 1 54837000 + 18802 18084 12306 12310 18789 18789 0.051248588175326404 HDALYVVG 8 Unmodified _HDALYVVG_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2279357910156 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 112.25 1 112.25 111.75 112.75 0 0 0 0 0.21181 1 22083 22083 15.768 2.2603 1 18803 5248;4855;1368 12307 12311 18790 18790 -0.0021045968236421686 HDCTAEKPM 9 Unmodified _HDCTAEKPM_ 0 0 0 REV__WFIKKN2|p.S143Pfs*32|1|0.54|ENSG00000173714|chr17:50839711-50839712|-/CC|frameshift_variant REV__WFIKKN2|p.S143Pfs*32|1|0.54|ENSG00000173714|chr17:50839711-50839712|-/CC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.4803161621094 3 344.48101 1030.4212 NaN NaN NaN NaN NaN NaN NaN 27.861 1 26.105 25.605 26.605 -1.7552 0 0 0 0.19636 1 4681 4681 2.4985 0 1 + 18804 18371 12308 12312 18791 18791 -0.09279285991055986 HDEDSGINKDD 11 Unmodified _HDEDSGINKDD_ 0 0 0 REV__ENST00000526146.5_1_11:118183295-118183649:+|nuORF REV__ENST00000526146.5_1_11:118183295-118183649:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.757568359375 2 622.754921 1243.49529 NaN NaN NaN NaN NaN NaN NaN 140.32 1 140.32 139.82 140.82 0 0 0 0 0.22632 1 27931 27931 0.172 0.098736 1 + 18805 19464 12309 12313 18792 18792 -0.11671948094158324 HDEQDGVLKY 10 Unmodified _HDEQDGVLKY_ 0 0 0 REV__nc|ENSG00000112365|O43167-2|ZBTB24 REV__nc|ENSG00000112365|O43167-2|ZBTB24 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2853393554688 2 602.28566 1202.55677 NaN NaN NaN NaN NaN NaN NaN 75.956 1 72.322 71.822 72.822 -3.6337 0 0 0 2.8426 1 14450 14450 0.26539 0 1 + 18806 15297 12310 12314 18793 18793 -0.03640971604227161 HDETLRTIP 9 Unmodified _HDETLRTIP_ 0 0 0 SLC19A3|p.S26Lfs*19|1|0.25|ENSG00000135917|chr2:227702244-227702245|-/A|frameshift_variant SLC19A3|p.S26Lfs*19|1|0.25|ENSG00000135917|chr2:227702244-227702245|-/A|frameshift_variant SLC19A3|p.S26Lfs*19|1|0.25|ENSG00000135917|chr2:227702244-227702245|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.8661804199219 3 361.192734 1080.55637 -0.41168 -0.0001487 0.65729 0.00023741 0.2456 8.8709E-05 361.1929008915722 17.848 0.54641 16.576 16.351 16.897 -1.2722 40 15 4 0 0 0 0.39168 1 2653 2653 0.029283 0 1 8967600 18807 25672 12311 12315 18794 18794 0.019316534665676954 HDIAHIPA 8 Unmodified _HDIAHIPA_ 0 0 0 nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ARHGAP21|p.I1365Rfs*23|1|0.25|ENSG00000107863|chr10:24591280-24591281|TA/-|frameshift_variant;ARHGAP21|p.K1443*|1|0.33|ENSG00000107863|chr10:24585962-24585963|-/A|frameshift_variant;ARHGAP21|p.D1617Tfs*32|1|0.1|ENSG00000107863|chr10:24585440-24585440|C/-|frameshift_variant;ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80777029-80777566:-|nuORF nc|ENSG00000107863|Q5T5U3-3|ARHGAP21 nc|ENSG00000107863|Q5T5U3-3|ARHGAP21 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2305603027344 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 177.86 1 172.99 172.49 173.49 -4.8686 0 0 0 0.23782 1 35400 35400 0.063987 0.055711 1 18808 204 12312 12316 18795 18795 0.009123624117592044 HDKLFNLVR 9 Unmodified _HDKLFNLVR_ 0 0 0 REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2200927734375 3 381.220735 1140.64038 NaN NaN NaN NaN NaN NaN NaN 149.28 1 144.55 144.05 145.05 -4.7323 0 0 0 0.23508 1 29648 29648 0.96228 0 1 + 18809 18932 12313 12317 18796 18796 0.07568229354114919 HDKVHKYKS 9 Unmodified _HDKVHKYKS_ 0 0 0 REV__ENSG00000181192|ENST00000263035|DHTKD1 REV__ENSG00000181192|ENST00000263035|DHTKD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.20977783203125 3 381.208607 1140.60399 NaN NaN NaN NaN NaN NaN NaN 113.84 1 109.28 108.78 109.78 -4.555 0 0 0 0.19645 1 21853 21853 2.6312 2.5874 1 + 18810 18722 12314 12318 18797 18797 0.03931352457425419 HDMRHIKRRRK 11 Unmodified _HDMRHIKRRRK_ 0 0 0 REV__nc|ENSG00000136960|Q13822-2|ENPP2 REV__nc|ENSG00000136960|Q13822-2|ENPP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 766.8292236328125 2 766.944402 1531.87425 NaN NaN NaN NaN NaN NaN NaN 168.21 1 163.32 162.82 163.82 -4.8916 0 0 0 0.23698 1 33150 33150 2.7352 1.5419 1 + 18811 24054 12315 12319 18798 18798 0.12958802241814737 HDPDCAGC 8 Unmodified _HDPDCAGC_ 0 0 0 nc|ENSG00000181409|Q6ZMQ8-3|AATK;AATK|p.L1059Tfs*5|1|0.32|ENSG00000181409|chr17:81120762-81120763|-/G|frameshift_variant;AATK|p.F1101Sfs*3|1|0.46|ENSG00000181409|chr17:81120634-81120634|A/-|frameshift_variant;ENSG00000181409|ENST00000326724|AATK;nc|ENSG00000181409|Q6ZMQ8-2|AATK nc|ENSG00000181409|Q6ZMQ8-3|AATK nc|ENSG00000181409|Q6ZMQ8-3|AATK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 409.18267822265625 2 409.133813 816.253073 NaN NaN NaN NaN NaN NaN NaN 52.584 1 49.701 49.201 50.201 -2.8837 0 0 0 0.21486 1 10010 10010 0.79363 0 1 18812 5 12316 12320 18799 18799 -0.16240348184851428 HDPLADVSND 10 Unmodified _HDPLADVSND_ 0 0 0 ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.276123046875 2 541.741085 1081.46762 0.053025 2.8726E-05 0.43861 0.00023761 0.49164 0.00026634 542.2423014204113 39.421 1.0524 36.979 36.685 37.738 -2.4419 51 29 3 0 0 0 0.87565 1 7003 7003 15.248 7.9593 1 850570 18813 2329 12317 12321 18800 18800 -0.06985806563761798 HDQFIKILK 9 Unmodified _HDQFIKILK_ 0 0 0 REV__SLC4A1|p.Q550Rfs*9|1|0.09|ENSG00000004939|chr17:44255826-44255826|T/-|frameshift_variant REV__SLC4A1|p.Q550Rfs*9|1|0.09|ENSG00000004939|chr17:44255826-44255826|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.20843505859375 3 381.229119 1140.66553 NaN NaN NaN NaN NaN NaN NaN 14.573 1 13.4 12.9 13.9 -1.173 0 0 0 0.1963 1 1980 1980 0 0 1 + 18814 13846 12318 12322 18801 18801 0.10082284156692367 HDRKRQKR 8 Unmodified _HDRKRQKR_ 0 0 0 REV__THOC2|p.E1480Q|1|0.27|ENSG00000125676|chrX:123614063-123614063|C/G|missense_variant REV__THOC2|p.E1480Q|1|0.27|ENSG00000125676|chrX:123614063-123614063|C/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2122802734375 3 375.223362 1122.64826 -0.39473 -0.00014811 -1.2386 -0.00046474 -1.6333 -0.00061285 375.2227512108224 57.311 0.34286 57.311 57.165 57.508 0 14 9 2 0 0 0 0.80867 1 10991 10991 3.9444 0.35734 1 843870 + 18815 24798 12319 12323 18802 18802 0.09183801394260627 HDRVLNAH 8 Unmodified _HDRVLNAH_ 0 0 0 REV__ENST00000559466.1_1_21:9908333-9912191:-|nuORF REV__ENST00000559466.1_1_21:9908333-9912191:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2539367675781 2 481.251757 960.488962 -0.0060266 -2.9003E-06 -0.6764 -0.00032552 -0.68243 -0.00032842 481.2515320273495 26.638 0.40792 24.716 24.576 24.984 -1.9222 16 11 2 0 0 0 0.70613 1 4459 4459 13.508 0.97634 1 798010 + 18816 23030 12320 12324 18803 18803 0.00713668046262228 HDSAAAHL 8 Unmodified _HDSAAAHL_ 0 0 0 REV__ENSG00000099625|ENST00000650044|CBARP REV__ENSG00000099625|ENST00000650044|CBARP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.1075744628906 2 411.198659 820.382765 NaN NaN NaN NaN NaN NaN NaN 59.262 1 59.262 58.762 59.762 0 0 0 0 0.21486 1 11354 11354 5.2307 2.3415 1 + 18817 14641 12321 12325 18804 18804 -0.03461087519053763 HDSLKKIVF 9 Unmodified _HDSLKKIVF_ 0 0 0 OR6C68|p.A307V|1|0.15|ENSG00000205327|chr12:55493297-55493297|C/T|missense_variant OR6C68|p.A307V|1|0.15|ENSG00000205327|chr12:55493297-55493297|C/T|missense_variant OR6C68|p.A307V|1|0.15|ENSG00000205327|chr12:55493297-55493297|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7836303710938 2 543.818941 1085.62333 0.032958 1.7923E-05 0.96243 0.00052339 0.99539 0.00054131 544.3217170019662 52.54 0.41988 49.445 49.304 49.724 -3.0954 24 11 3 0 0 0 0.86532 1 9729 9729 4.756 0.42677 1 1250500 18818 12735 12322 12326 18805 18805 0.08394308748324875 HDSMDNDCE 9 Unmodified _HDSMDNDCE_ 0 0 0 GEM|p.S104N|1|0.31|ENSG00000164949|chr8:94260193-94260193|C/T|missense_variant GEM|p.S104N|1|0.31|ENSG00000164949|chr8:94260193-94260193|C/T|missense_variant GEM|p.S104N|1|0.31|ENSG00000164949|chr8:94260193-94260193|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2691650390625 2 533.166038 1064.31752 NaN NaN NaN NaN NaN NaN NaN 165.66 1 160.87 160.37 161.37 -4.7898 0 0 0 0.23508 1 33198 33198 0.6015 0 1 18819 11845 12323 12327 18806 18806 -0.21206237889396107 HDSMDNDCE 9 Unmodified _HDSMDNDCE_ 0 0 0 GEM|p.S104N|1|0.31|ENSG00000164949|chr8:94260193-94260193|C/T|missense_variant GEM|p.S104N|1|0.31|ENSG00000164949|chr8:94260193-94260193|C/T|missense_variant GEM|p.S104N|1|0.31|ENSG00000164949|chr8:94260193-94260193|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2623901367188 2 533.166038 1064.31752 NaN NaN NaN NaN NaN NaN NaN 165.69 1 160.9 160.4 161.4 -4.7898 0 0 0 0.23508 1 33206 33206 0.6015 0 1 18820 11845 12323 12327 18807 18807 -0.21206237889396107 HDSSPACH 8 Unmodified _HDSSPACH_ 0 0 0 REV__ENST00000514947.1_1_5:126506935-126507295:-|nuORF REV__ENST00000514947.1_1_5:126506935-126507295:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.13775634765625 2 427.166502 852.31845 -0.090963 -3.8856E-05 1.0198 0.00043561 0.92881 0.00039676 427.16666987901937 41.858 0.63482 39.207 38.865 39.5 -2.651 23 17 2 0 0 0 0.76728 1 7481 7481 5.7604 0.52976 1 641670 + 18821 22581 12324 12328 18808 18808 -0.11361610667506739 HDSSPACH 8 Unmodified _HDSSPACH_ 0 0 0 REV__ENST00000514947.1_1_5:126506935-126507295:-|nuORF REV__ENST00000514947.1_1_5:126506935-126507295:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 427.166502 852.31845 0.24003 0.00010253 0.98945 0.00042266 1.2295 0.00052519 427.16656094850447 39.233 0.75505 39.233 38.924 39.679 0 0.021895 -7.1891E-05 NaN 5.7604 49 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3002800 + 18822 22581 12324 12328 -0.11361610667506739 HDSSPACH 8 Unmodified _HDSSPACH_ 0 0 0 REV__ENST00000514947.1_1_5:126506935-126507295:-|nuORF REV__ENST00000514947.1_1_5:126506935-126507295:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 427.166502 852.31845 -0.31549 -0.00013477 1.4142 0.00060412 1.0988 0.00046935 427.1669298497815 41.858 0.55151 39.223 38.947 39.499 -2.6348 0.012042 0.00029102 NaN 5.7604 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 885670 + 18823 22581 12324 12328 -0.11361610667506739 HDSSPACH 8 Unmodified _HDSSPACH_ 0 0 0 REV__ENST00000514947.1_1_5:126506935-126507295:-|nuORF REV__ENST00000514947.1_1_5:126506935-126507295:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 427.166502 852.31845 -0.22329 -9.5381E-05 0.942 0.00040239 0.71871 0.00030701 427.166785066107 41.787 0.48586 39.181 38.945 39.431 -2.606 -0.029888 -0.00011243 NaN 5.7604 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 691570 + 18824 22581 12324 12328 -0.11361610667506739 HDSSVIPD 8 Unmodified _HDSSVIPD_ 0 0 0 ENSG00000173376|ENST00000379692|NDNF;NDNF|p.T201Lfs*5|1|0.12|ENSG00000173376|chr4:121037371-121037371|G/-|frameshift_variant ENSG00000173376|ENST00000379692|NDNF ENSG00000173376|ENST00000379692|NDNF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 435.20269775390625 2 435.203607 868.392661 NaN NaN NaN NaN NaN NaN NaN 23.25 1 21.797 21.297 22.297 -1.4535 0 0 0 0.21452 1 3744 3744 13.508 8.2772 1 18825 6290 12325 12329 18809 18809 -0.04679944304325545 HDTDIGHHIYY 11 Unmodified _HDTDIGHHIYY_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2207336425781 3 457.542314 1369.60511 0.13639 6.2405E-05 0.077432 3.5428E-05 0.21382 9.7833E-05 457.8766667884472 34.503 0.48635 32.25 31.977 32.463 -2.2527 37 13 3 0 0 0 0.60461 1 6040 6040 17.863 7.3357 1 4350900 + 18826 15567 12326 12330 18810 18810 -0.06490477964325692 HDTDIGHHIYY 11 Unmodified _HDTDIGHHIYY_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 457.542314 1369.60511 -0.27492 -0.00012579 0.44289 0.00020264 0.16796 7.6849E-05 457.8768549024138 34.608 0.48347 32.291 32.015 32.498 -2.3175 0.089245 0.00046483 NaN 17.863 37 13 4 NaN NaN NaN NaN 0 NaN NaN 0 4309500 + 18827 15567 12326 12330 -0.06490477964325692 HDTDIGHHIYY 11 Unmodified _HDTDIGHHIYY_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 457.542314 1369.60511 0.13639 6.2405E-05 0.077432 3.5428E-05 0.21382 9.7833E-05 457.8766667884472 34.503 0.48635 32.25 31.977 32.463 -2.2527 0.048645 -3.6803E-05 NaN 17.863 37 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4350900 + 18828 15567 12326 12330 -0.06490477964325692 HDTFLALL 8 Unmodified _HDTFLALL_ 0 0 0 REV__nc|ENSG00000169760|Q8N2Q7|NLGN1 REV__nc|ENSG00000169760|Q8N2Q7|NLGN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2579650878906 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 139.09 1 134.45 133.95 134.95 -4.6439 0 0 0 0.21486 1 27458 27458 5.7604 0 1 + 18829 24158 12327 12331 18811 18811 0.034706863857991266 HDTKFFQHTFH 11 Unmodified _HDTKFFQHTFH_ 0 0 0 REV__ENST00000490885.6_1_1:186645551-186649536:-|nuORF REV__ENST00000490885.6_1_1:186645551-186649536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77777099609375 3 482.230071 1443.66838 NaN NaN NaN NaN NaN NaN NaN 60.021 1 60.021 59.521 60.521 0 0 0 0 0.22632 1 11506 11506 0.172 0 1 + 18830 14306 12328 12332 18812 18812 -0.0357049245642429 HDTLINNRGY 10 Unmodified _HDTLINNRGY_ 0 0 0 REV__ENSG00000127526|ENST00000595753|SLC35E1 REV__ENSG00000127526|ENST00000595753|SLC35E1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 401.353515625 3 401.535271 1201.58398 -0.10333 -4.149E-05 0.27849 0.00011182 0.17516 7.0332E-05 401.53515511834325 19.223 0.28375 17.826 17.708 17.992 -1.3966 14 7 3 0 0 0 0.76159 1 3180 3180 2.086 1.0145 1 645400 + 18831 15890 12329 12333 18813 18813 -0.00874443273187353 HDTLINNRGY 10 Unmodified _HDTLINNRGY_ 0 0 0 REV__ENSG00000127526|ENST00000595753|SLC35E1 REV__ENSG00000127526|ENST00000595753|SLC35E1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 401.535271 1201.58398 -0.10333 -4.149E-05 0.27849 0.00011182 0.17516 7.0332E-05 401.53515511834325 19.223 0.28375 17.826 17.708 17.992 -1.3966 0.036037 -0.00051587 NaN 2.086 14 7 3 NaN NaN NaN NaN 0 NaN NaN 0 645400 + 18832 15890 12329 12333 -0.00874443273187353 HDTLINNRGY 10 Unmodified _HDTLINNRGY_ 0 0 0 REV__ENSG00000127526|ENST00000595753|SLC35E1 REV__ENSG00000127526|ENST00000595753|SLC35E1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 401.535271 1201.58398 -0.34811 -0.00013978 0.064284 2.5812E-05 -0.28382 -0.00011396 401.5353002781907 19.113 0.24712 17.787 17.648 17.895 -1.3251 -0.0027703 -0.00077389 NaN 2.086 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 471080 + 18833 15890 12329 12333 -0.00874443273187353 HDTLINNRGY 10 Unmodified _HDTLINNRGY_ 0 0 0 REV__ENSG00000127526|ENST00000595753|SLC35E1 REV__ENSG00000127526|ENST00000595753|SLC35E1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 401.535271 1201.58398 -1.5373 -0.00061726 1.2072 0.00048471 -0.33011 -0.00013255 401.53571929551083 19.392 0.24122 17.757 17.67 17.912 -1.6351 -0.033266 0.00060281 NaN 2.086 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 464310 + 18834 15890 12329 12333 -0.00874443273187353 HDWEATSL 8 Unmodified _HDWEATSL_ 0 0 0 ENST00000281187.9_1_11:134115926-134116100:+|nuORF ENST00000281187.9_1_11:134115926-134116100:+|nuORF ENST00000281187.9_1_11:134115926-134116100:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.2146301269531 3 320.147013 957.41921 NaN NaN NaN NaN NaN NaN NaN 97.039 1 92.942 92.442 93.442 -4.0978 0 0 0 0.21486 1 19038 19038 1.6526 0 1 18835 8441 12330 12334 18814 18814 -0.061202554129977216 HEAALSPVGY 10 Unmodified _HEAALSPVGY_ 0 0 0 REV__ENST00000492117.1_1_Y:21877982-21883284:-|nuORF REV__ENST00000492117.1_1_Y:21877982-21883284:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2630004882812 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 118.69 1 114.19 113.69 114.69 -4.502 0 0 0 0.22588 1 23403 23403 10.824 1.4765 1 + 18836 13944 12331 12335 18815 18815 -0.011194204534604069 HEADALLF 8 Unmodified _HEADALLF_ 0 0 0 CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant;CNKSR1|p.P512Hfs*58|2|0.35|ENSG00000142675|chr1:26188287-26188287|C/-|frameshift_variant;CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant;ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1;ENST00000465415.1_1_1:26504038-26507409:+|nuORF CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2388610839844 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 127.34 1 122.72 122.22 123.22 -4.6172 0 0 0 0.18417 1 25112 25112 30.225 5.5509 1 18837 594 12332 12336 18816 18816 -0.010864770279567892 HEADALLF 8 Unmodified _HEADALLF_ 0 0 0 CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant;CNKSR1|p.P512Hfs*58|2|0.35|ENSG00000142675|chr1:26188287-26188287|C/-|frameshift_variant;CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant;ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1;ENST00000465415.1_1_1:26504038-26507409:+|nuORF CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2317199707031 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 127.38 1 122.68 122.18 123.18 -4.6998 0 0 0 0.22847 1 24502 24502 10.074 0.52995 1 18838 594 12332 12336 18817 18817 -0.010864770279567892 HEADVDVLM 9 Oxidation (M) _HEADVDVLM(Oxidation (M))_ HEADVDVLM(1) HEADVDVLM(82) 0 0 1 nc|ENSG00000123575|Q6PEV8-2|FAM199X;ENSG00000123575|ENST00000493442|FAM199X nc|ENSG00000123575|Q6PEV8-2|FAM199X nc|ENSG00000123575|Q6PEV8-2|FAM199X MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6926879882812 2 522.736957 1043.45936 -0.10591 -5.5365E-05 0.44205 0.00023108 0.33613 0.00017571 522.7371503085326 58.694 0.82934 58.694 58.312 59.141 0 59 23 3 0 0 0 0.051875 1 11278 11278 81.552 72.484 1 7469800 18839 3275 12333 12337 18818 18818 49 -0.06063076804753109 HEADVDVLM 9 Oxidation (M) _HEADVDVLM(Oxidation (M))_ HEADVDVLM(1) HEADVDVLM(40) 0 0 1 nc|ENSG00000123575|Q6PEV8-2|FAM199X;ENSG00000123575|ENST00000493442|FAM199X nc|ENSG00000123575|Q6PEV8-2|FAM199X nc|ENSG00000123575|Q6PEV8-2|FAM199X MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6871948242188 2 522.736957 1043.45936 -0.17088 -8.9327E-05 0.1199 6.2676E-05 -0.050984 -2.6651E-05 522.7370104608987 61.436 0.79769 58.474 58.14 58.937 -2.9614 59 22 3 0 0 0 0.063576 1 11899 11899 40.317 27.461 1 7349700 18840 3275 12333 12337 18819 18819 49 -0.06063076804753109 HEADVDVLM 9 Oxidation (M) _HEADVDVLM(Oxidation (M))_ HEADVDVLM(1) HEADVDVLM(55) 0 0 1 nc|ENSG00000123575|Q6PEV8-2|FAM199X;ENSG00000123575|ENST00000493442|FAM199X nc|ENSG00000123575|Q6PEV8-2|FAM199X nc|ENSG00000123575|Q6PEV8-2|FAM199X MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2717895507812 2 522.736957 1043.45936 0.25163 0.00013154 -0.77102 -0.00040304 -0.51939 -0.0002715 522.7368402758224 61.834 0.93389 58.595 58.103 59.037 -3.2395 82 26 4 0 0 0 0.081249 1 11580 11580 54.774 20.671 1 6723800 18841 3275 12333 12337 18820 18820 49 -0.06063076804753109 HEAEVTNY 8 Unmodified _HEAEVTNY_ 0 0 0 AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9 AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2373046875 2 481.714339 961.414125 0.070323 3.3876E-05 0.64131 0.00030893 0.71163 0.0003428 481.7144905565121 25.955 0.55674 25.955 25.632 26.189 0 36 15 3 0 0 0 0.17017 1 4523 4523 77.984 47.76 1 6740900 18842 111 12334 12338 18821 18821 -0.06812559275613239 HEAEVTNY 8 Unmodified _HEAEVTNY_ 0 0 0 AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9 AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.244873046875 2 481.714339 961.414125 0.93458 0.0004502 -0.61617 -0.00029682 0.31841 0.00015338 481.71396497306466 27.738 0.63013 25.956 25.56 26.19 -1.7821 42 17 4 0 0 0 0.0029817 1 4915 4915 101.72 38.159 1 6269900 18843 111 12334 12338 18822 18822 -0.06812559275613239 HEAEVTNY 8 Unmodified _HEAEVTNY_ 0 0 0 AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9 AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7765808105469 2 481.714339 961.414125 0.25592 0.00012328 0.20395 9.8248E-05 0.45987 0.00022153 481.7143743221742 27.619 0.52393 25.864 25.548 26.072 -1.7552 32 14 3 0 0 0 3.5494E-05 1 4603 4603 104.8 41.236 1 7032500 18844 111 12334 12338 18823 18823 -0.06812559275613239 HEAEVTNY 8 Unmodified _HEAEVTNY_ 0 0 0 AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9 AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7798156738281 2 481.714339 961.414125 0.14415 6.9437E-05 0.3077 0.00014822 0.45185 0.00021766 481.7144192949109 27.786 0.56264 25.789 25.467 26.029 -1.9962 36 15 3 0 0 0 0.17017 1 4647 4647 77.984 3.5616 1 5278600 18845 111 12334 12338 18824 18824 -0.06812559275613239 HEAFIEEGTF 10 Unmodified _HEAFIEEGTF_ 0 0 0 ENST00000465151.5_1_2:85766338-85768324:+|nuORF;ENST00000469221.5_1_2:85766338-85768508:+|nuORF;ENSG00000168906|ENST00000306434|MAT2A ENST00000465151.5_1_2:85766338-85768324:+|nuORF ENST00000465151.5_1_2:85766338-85768324:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.260009765625 2 590.269478 1178.5244 0.4314 0.00025464 0.11102 6.5532E-05 0.54242 0.00032018 590.2695928773603 109.63 0.51725 109.63 109.33 109.85 0 23 14 2 0 0 0 0.093758 2 21575 21575;21599 62.573 35.689 1 3337700 18846 5948 12335 12339 18825;18826 18825 -0.05771759007234323 HEAFIEEGTF 10 Unmodified _HEAFIEEGTF_ 0 0 0 ENST00000465151.5_1_2:85766338-85768324:+|nuORF;ENST00000469221.5_1_2:85766338-85768508:+|nuORF;ENSG00000168906|ENST00000306434|MAT2A ENST00000465151.5_1_2:85766338-85768324:+|nuORF ENST00000465151.5_1_2:85766338-85768324:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2697143554688 2 590.269478 1178.5244 0.37277 0.00022003 0.025099 1.4815E-05 0.39787 0.00023485 590.2695208653076 114.14 0.63208 109.67 109.3 109.93 -4.4726 30 17 2 0 0 0 5.2093E-07 3 22497 22446;22464;22497 144.35 104.39 1 4579700 18847 5948 12335 12339 18827;18828;18829 18829 -0.05771759007234323 HEAFIEEGTF 10 Unmodified _HEAFIEEGTF_ 0 0 0 ENST00000465151.5_1_2:85766338-85768324:+|nuORF;ENST00000469221.5_1_2:85766338-85768508:+|nuORF;ENSG00000168906|ENST00000306434|MAT2A ENST00000465151.5_1_2:85766338-85768324:+|nuORF ENST00000465151.5_1_2:85766338-85768324:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2696533203125 2 590.269478 1178.5244 0.53914 0.00031824 -0.068761 -4.0588E-05 0.47038 0.00027765 590.2692609781257 114.13 0.62634 109.57 109.32 109.94 -4.555 33 17 3 0 0 0 0.0023783 2 21937 21887;21937 111.29 78.982 1 3815300 18848 5948 12335 12339 18830;18831 18831 -0.05771759007234323 HEAFIEEGTF 10 Unmodified _HEAFIEEGTF_ 0 0 0 ENST00000465151.5_1_2:85766338-85768324:+|nuORF;ENST00000469221.5_1_2:85766338-85768508:+|nuORF;ENSG00000168906|ENST00000306434|MAT2A ENST00000465151.5_1_2:85766338-85768324:+|nuORF ENST00000465151.5_1_2:85766338-85768324:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2697143554688 2 590.269478 1178.5244 0.561 0.00033114 -0.0994 -5.8673E-05 0.4616 0.00027247 590.2693308170884 113.86 0.65438 109.59 109.31 109.96 -4.2725 30 18 2 0 0 0 8.7244E-05 3 21944 21893;21944;21991 131.27 91.31 1 3863300 18849 5948 12335 12339 18832;18833;18834 18833 -0.05771759007234323 HEAGILENP 9 Unmodified _HEAGILENP_ 0 0 0 ENST00000439895.1_1_2:39038138-39038510:-|nuORF ENST00000439895.1_1_2:39038138-39038510:-|nuORF ENST00000439895.1_1_2:39038138-39038510:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2552490234375 2 490.245806 978.47706 0.67497 0.0003309 0.11005 5.3954E-05 0.78503 0.00038486 490.2448386454491 121.48 0.17712 116.8 116.66 116.84 -4.6873 5 4 2 0 0 0 0.48644 1 23320 23320 20.454 7.9221 1 309580 18850 9879 12336 12340 18835 18835 -0.013039934875905601 HEAGILENP 9 Unmodified _HEAGILENP_ 0 0 0 ENST00000439895.1_1_2:39038138-39038510:-|nuORF ENST00000439895.1_1_2:39038138-39038510:-|nuORF ENST00000439895.1_1_2:39038138-39038510:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2536315917969 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 121.04 1 116.35 115.85 116.85 -4.6873 0 0 0 0.18705 1 23235 23235 25.399 11.493 1 18851 9879 12336 12340 18836 18836 -0.013039934875905601 HEALDQLKQ 9 Unmodified _HEALDQLKQ_ 0 0 0 REV__ENSG00000125962|ENST00000473968|ARMCX5 REV__ENSG00000125962|ENST00000473968|ARMCX5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2842407226562 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 135.59 1 130.76 130.26 131.26 -4.8307 0 0 0 0.23508 1 26106 26106 10.824 0.75 1 + 18852 15845 12337 12341 18837 18837 0.01931653466544958 HEATGHCHA 9 Unmodified _HEATGHCHA_ 0 0 0 ENST00000314728.9_1_17:19239740-19240025:+|nuORF ENST00000314728.9_1_17:19239740-19240025:+|nuORF ENST00000314728.9_1_17:19239740-19240025:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23712158203125 2 481.6985 961.382448 0.26456 0.00012744 2.0177 0.00097193 2.2823 0.0010994 481.6994078151679 27.772 0.30971 26.017 25.83 26.14 -1.7552 13 8 2 0 0 0 0.60698 1 4626 4626 23.148 20.846 1 474970 18853 8672 12338 12342 18838 18838 -0.09978830510567605 HEAVIEKH 8 Unmodified _HEAVIEKH_ 0 0 0 ENSG00000105186|ENST00000306065|ANKRD27;ANKRD27|p.V858M|1|0.26|ENSG00000105186|chr19:32604346-32604346|C/T|missense_variant ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7798156738281 2 481.756341 961.498129 NaN NaN NaN NaN NaN NaN NaN 27.72 1 25.724 25.224 26.224 -1.9962 0 0 0 0.2074 1 4647 4647 19.439 4.8573 1 18854 2283 12339 12343 18839 18839 0.015840166119460264 HEAVPALH 8 Unmodified _HEAVPALH_ 0 0 0 ENST00000352397.9_1_22:43027442-43032826:-|nuORF ENST00000352397.9_1_22:43027442-43032826:-|nuORF ENST00000352397.9_1_22:43027442-43032826:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2317199707031 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 137.26 1 132.33 131.83 132.83 -4.9216 0 0 0 0.23366 1 26384 26384 0.12286 0 1 18855 8929 12340 12344 18840 18840 0.009123624117478357 HEAVSSSVG 9 Unmodified _HEAVSSSVG_ 0 0 0 REV__nc|ENSG00000171444|P23508|MCC REV__nc|ENSG00000171444|P23508|MCC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 436.2540283203125 2 436.709057 871.40356 NaN NaN NaN NaN NaN NaN NaN 116.99 1 112.63 112.13 113.13 -4.3585 0 0 0 0.19679 1 22522 22522 0.12781 0.096405 1 + 18856 18224 12341 12345 18841 18841 -0.037285419300360445 HEDAFSKDK 9 Unmodified _HEDAFSKDK_ 0 0 0 HLF|p.S100Afs*106|1|0.55|ENSG00000108924|chr17:55267927-55267927|C/-|frameshift_variant;HLF|p.L92Cfs*114|1|0.19|ENSG00000108924|chr17:55267906-55267906|T/-|frameshift_variant;ENSG00000108924|ENST00000226067|HLF HLF|p.S100Afs*106|1|0.55|ENSG00000108924|chr17:55267927-55267927|C/-|frameshift_variant HLF|p.S100Afs*106|1|0.55|ENSG00000108924|chr17:55267927-55267927|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2680053710938 2 538.753995 1075.49344 -1.0404 -0.00056054 0.8124 0.00043768 -0.22804 -0.00012286 538.7546388530342 18.73 1.6353 17.094 16.9 18.535 -1.6351 137 46 6 0 0 0 0.60805 1 2779 2779 12.532 0.89125 1 203720000 18857 2503 12342 12346 18842 18842 -0.041289123214710344 HEDEDSPVPG 10 Unmodified _HEDEDSPVPG_ 0 0 0 tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1 tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1 tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.1533203125 3 361.152604 1080.43598 NaN NaN NaN NaN NaN NaN NaN 77.026 1 77.026 76.526 77.526 0 0 0 0 0.22588 1 14971 14971 3.8763 0 1 18858 25990 12343 12347 18843 18843 -0.10101799317703808 HEDHERNVD 9 Unmodified _HEDHERNVD_ 0 0 0 REV__PPP1R3A|p.N476Kfs*4|1|0.28|ENSG00000154415|chr7:113879664-113879664|A/-|frameshift_variant REV__PPP1R3A|p.N476Kfs*4|1|0.28|ENSG00000154415|chr7:113879664-113879664|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3217163085938 2 575.747233 1149.47991 -0.64932 -0.00037384 0.71207 0.00040997 0.062748 3.6127E-05 575.7474156141595 21.883 0.50954 20.162 19.85 20.36 -1.7211 23 14 2 0 0 0 0.84208 1 3430 3430 7.2892 0 1 604950 + 18859 17180 12344 12348 18844 18844 -0.08884770100712558 HEDLAYSSY 9 Unmodified _HEDLAYSSY_ 0 0 0 APPBP2|p.H343Q|1|0.41|ENSG00000062725|chr17:60460695-60460695|G/T|missense_variant;ENST00000592995.1_1_17:58538022-58538124:-|nuORF;ENSG00000062725|ENST00000083182|APPBP2 APPBP2|p.H343Q|1|0.41|ENSG00000062725|chr17:60460695-60460695|G/T|missense_variant APPBP2|p.H343Q|1|0.41|ENSG00000062725|chr17:60460695-60460695|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7701416015625 2 542.732729 1083.4509 0.2384 0.00012939 -0.0040465 -2.1962E-06 0.23435 0.00012719 542.732736252633 60.847 0.59087 57.914 57.577 58.168 -2.9333 44 16 3 0 0 0 0.051332 1 11719 11719 88.904 88.904 1 10603000 18860 187 12345 12349 18845 18845 -0.08748307449695858 HEDLAYSSY 9 Unmodified _HEDLAYSSY_ 0 0 0 APPBP2|p.H343Q|1|0.41|ENSG00000062725|chr17:60460695-60460695|G/T|missense_variant;ENST00000592995.1_1_17:58538022-58538124:-|nuORF;ENSG00000062725|ENST00000083182|APPBP2 APPBP2|p.H343Q|1|0.41|ENSG00000062725|chr17:60460695-60460695|G/T|missense_variant APPBP2|p.H343Q|1|0.41|ENSG00000062725|chr17:60460695-60460695|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.732729 1083.4509 0.089219 4.8422E-05 -0.14097 -7.6508E-05 -0.051749 -2.8086E-05 542.7326497378905 57.594 0.83123 57.594 57.237 58.068 0 -0.18581 -5.6302E-05 NaN 88.904 52 23 4 NaN NaN NaN NaN 0 NaN NaN 0 6082600 18861 187 12345 12349 -0.08748307449695858 HEDLAYSSY 9 Unmodified _HEDLAYSSY_ 0 0 0 APPBP2|p.H343Q|1|0.41|ENSG00000062725|chr17:60460695-60460695|G/T|missense_variant;ENST00000592995.1_1_17:58538022-58538124:-|nuORF;ENSG00000062725|ENST00000083182|APPBP2 APPBP2|p.H343Q|1|0.41|ENSG00000062725|chr17:60460695-60460695|G/T|missense_variant APPBP2|p.H343Q|1|0.41|ENSG00000062725|chr17:60460695-60460695|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.732729 1083.4509 0.11328 6.1479E-05 -0.0075293 -4.0864E-06 0.10575 5.7392E-05 542.7327130332286 61.23 0.67046 57.861 57.442 58.112 -3.3694 0.080687 8.8541E-05 NaN 88.904 38 18 4 NaN NaN NaN NaN 0 NaN NaN 0 5887800 18862 187 12345 12349 -0.08748307449695858 HEDLAYSSY 9 Unmodified _HEDLAYSSY_ 0 0 0 APPBP2|p.H343Q|1|0.41|ENSG00000062725|chr17:60460695-60460695|G/T|missense_variant;ENST00000592995.1_1_17:58538022-58538124:-|nuORF;ENSG00000062725|ENST00000083182|APPBP2 APPBP2|p.H343Q|1|0.41|ENSG00000062725|chr17:60460695-60460695|G/T|missense_variant APPBP2|p.H343Q|1|0.41|ENSG00000062725|chr17:60460695-60460695|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.732729 1083.4509 0.26087 0.00014158 -0.17933 -9.733E-05 0.081542 4.4255E-05 542.7326236468646 60.975 0.66323 57.752 57.456 58.119 -3.2237 -0.028511 -9.7945E-05 NaN 88.904 46 18 4 NaN NaN NaN NaN 0 NaN NaN 0 7277700 18863 187 12345 12349 -0.08748307449695858 HEDQVEQY 8 Unmodified _HEDQVEQY_ 0 0 0 ENST00000496738.5_1_1:156104631-156105741:+|nuORF;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA ENST00000496738.5_1_1:156104631-156105741:+|nuORF ENST00000496738.5_1_1:156104631-156105741:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6856079101562 2 524.222528 1046.4305 0.19745 0.00010351 0.23634 0.00012389 0.43378 0.0002274 524.2227451391685 23.329 0.59484 23.329 22.994 23.589 0 51 16 5 0 0 0 0.10682 1 3977 3977 78.149 27.294 1 3247300 18864 5268 12346 12350 18846 18846 -0.090854781095004 HEDQVEQY 8 Unmodified _HEDQVEQY_ 0 0 0 ENST00000496738.5_1_1:156104631-156105741:+|nuORF;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA ENST00000496738.5_1_1:156104631-156105741:+|nuORF ENST00000496738.5_1_1:156104631-156105741:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6851806640625 2 524.222528 1046.4305 0.89074 0.00046695 0.29049 0.00015228 1.1812 0.00061923 524.2227095622143 24.842 0.48327 23.194 22.959 23.442 -1.6482 26 13 2 0 0 0 0.44257 1 4335 4335 41.84 14.956 1 3079800 18865 5268 12346 12350 18847 18847 -0.090854781095004 HEDQWCYEY 9 Unmodified _HEDQWCYEY_ 0 0 0 REV__MOB3A|p.R100C|1|0.34|ENSG00000172081|chr19:2078263-2078263|G/A|missense_variant REV__MOB3A|p.R100C|1|0.34|ENSG00000172081|chr19:2078263-2078263|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2454528808594 3 424.825722 1271.45534 0.036101 1.5337E-05 0.31969 0.00013581 0.35579 0.00015115 424.8257502858857 17.687 0.32565 17.687 17.552 17.878 0 17 8 3 0 0 0 0.65485 1 2826 2826 0 0 1 596220 + 18866 23870 12347 12351 18848 18848 -0.169531662984582 HEDRYDHEKE 10 Unmodified _HEDRYDHEKE_ 0 0 0 REV__ENST00000561727.1_1_16:66768052-66770124:-|nuORF REV__ENST00000561727.1_1_16:66768052-66770124:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.19671630859375 3 453.197095 1356.56946 NaN NaN NaN NaN NaN NaN NaN 40.579 1 37.944 37.444 38.444 -2.6348 0 0 0 2.8426 1 7564 7564 3.8763 3.8449 1 + 18867 13764 12348 12352 18849 18849 -0.09456560212038312 HEDTGILDF 9 Unmodified _HEDTGILDF_ 0 0 0 ENSG00000134571|ENST00000545968|MYBPC3;nc|ENSG00000134571|Q14896-2|MYBPC3;MYBPC3|p.P453Lfs*13|1|0.26|ENSG00000134571|chr11:47342929-47342929|G/-|frameshift_variant ENSG00000134571|ENST00000545968|MYBPC3 ENSG00000134571|ENST00000545968|MYBPC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6839599609375 2 523.743096 1045.47164 NaN NaN NaN NaN NaN NaN NaN 24.478 1 22.83 22.33 23.33 -1.6482 0 0 0 0.20628 1 4264 4264 21.747 5.8995 1 18868 3862 12349 12353 18850 18850 -0.04927717070063409 HEECTRKAID 10 Unmodified _HEECTRKAID_ 0 0 0 REV__PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant REV__PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 401.2295227050781 3 401.192517 1200.55572 0.22499 9.0266E-05 0.11485 4.6077E-05 0.33984 0.00013634 401.1925248663132 73.149 1.0223 69.499 69.212 70.235 -3.6499 86 28 4 0 0 0 0.74847 1 13936 13936 6.1918 0.89496 1 21390000 + 18869 16756 12350 12354 18851 18851 -0.03653509244804809 HEECTRKAID 10 Unmodified _HEECTRKAID_ 0 0 0 REV__PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant REV__PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 401.192517 1200.55572 -0.27242 -0.00010929 0.6173 0.00024766 0.34488 0.00013836 401.19270931146997 69.666 0.7466 69.666 69.389 70.135 0 0.065197 0.00012499 NaN 6.1918 71 20 5 NaN NaN NaN NaN 0 NaN NaN 0 30597000 + 18870 16756 12350 12354 -0.03653509244804809 HEECTRKAID 10 Unmodified _HEECTRKAID_ 0 0 0 REV__PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant REV__PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 401.192517 1200.55572 -0.30243 -0.00012133 0.69521 0.00027891 0.39278 0.00015758 401.19273721485564 72.974 0.8616 69.663 69.312 70.174 -3.3107 0.062528 0.00021875 NaN 6.1918 75 23 4 NaN NaN NaN NaN 0 NaN NaN 0 29354000 + 18871 16756 12350 12354 -0.03653509244804809 HEECTRKAID 10 Unmodified _HEECTRKAID_ 0 0 0 REV__PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant REV__PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 401.192517 1200.55572 0.22499 9.0266E-05 0.11485 4.6077E-05 0.33984 0.00013634 401.1925248663132 73.149 1.0223 69.499 69.212 70.235 -3.6499 -0.10159 -0.00047975 NaN 6.1918 86 28 4 NaN NaN NaN NaN 0 NaN NaN 0 21390000 + 18872 16756 12350 12354 -0.03653509244804809 HEECTRKAID 10 Unmodified _HEECTRKAID_ 0 0 0 REV__PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant REV__PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 401.192517 1200.55572 -0.15186 -6.0927E-05 0.58266 0.00023376 0.43079 0.00017283 401.1926981452433 73.113 0.94066 69.575 69.266 70.207 -3.5385 -0.026136 8.3292E-05 NaN 6.1918 84 26 5 NaN NaN NaN NaN 0 NaN NaN 0 29173000 + 18873 16756 12350 12354 -0.03653509244804809 HEEEQSSV 8 Unmodified _HEEEQSSV_ 0 0 0 REV__nc|ENSG00000214193|A4FU49|SH3D21 REV__nc|ENSG00000214193|A4FU49|SH3D21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.14263916015625 3 315.470044 943.388304 -0.68663 -0.00021661 -0.77259 -0.00024373 -1.4592 -0.00046034 315.4697015552525 109.96 0.75724 105.58 105 105.75 -4.3776 32 21 3 0 0 0 1.0279 1 21664 21664 0.30703 0 1 1455300 + 18874 19663 12351 12355 18852 18852 -0.0856545351788327 HEELNKIPV 9 Unmodified _HEELNKIPV_ 0 0 0 REV__nc|ENSG00000124196|Q9H1H1-2|GTSF1L REV__nc|ENSG00000124196|Q9H1H1-2|GTSF1L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 77.206 1 73.547 73.047 74.047 -3.6588 0 0 0 0.23508 1 14695 14695 5.2969 0.76802 1 + 18875 15760 12352 12356 18853 18853 0.046171279889904326 HEFEDDKPY 9 Unmodified _HEFEDDKPY_ 0 0 0 REV__ZFHX3|p.Q2274H|1|0.17|ENSG00000140836|chr16:72795860-72795860|T/A|missense_variant REV__ZFHX3|p.Q2274H|1|0.17|ENSG00000140836|chr16:72795860-72795860|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2537231445312 2 590.251286 1178.48802 NaN NaN NaN NaN NaN NaN NaN 65.641 1 62.183 61.683 62.683 -3.4581 0 0 0 0.23508 1 12287 12287 8.5933 0 1 + 18876 25560 12353 12357 18854 18854 -0.0940863590394656 HEFGAITF 8 Unmodified _HEFGAITF_ 0 0 0 ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant;ENSG00000023330|ENST00000484952|ALAS1 ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.54498291015625 2 461.226885 920.439217 0.19994 9.2217E-05 0.1588 7.3243E-05 0.35874 0.00016546 461.2268670807018 128.12 1.3328 128.12 127.58 128.91 0 103 37 4 0 0 0 0.036929 1 25283 25283 93.883 46.963 1 62547000 18877 117 12354 12358 18855 18855 -0.02418459682394314 HEFGAITF 8 Unmodified _HEFGAITF_ 0 0 0 ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant;ENSG00000023330|ENST00000484952|ALAS1 ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.226885 920.439217 -0.093634 -4.3187E-05 0.31218 0.00014399 0.21855 0.0001008 461.2269609024356 132.64 1.2381 128 127.48 128.72 -4.6399 -0.028168 8.9004E-05 NaN 93.883 107 34 4 NaN NaN NaN NaN 0 NaN NaN 0 67268000 18878 117 12354 12358 -0.02418459682394314 HEFGAITF 8 Unmodified _HEFGAITF_ 0 0 0 ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant;ENSG00000023330|ENST00000484952|ALAS1 ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.226885 920.439217 -0.0045813 -2.113E-06 0.27538 0.00012701 0.2708 0.0001249 461.2269390753064 132.86 1.2421 128.01 127.49 128.74 -4.8527 -0.016244 5.5056E-05 NaN 93.883 96 34 4 NaN NaN NaN NaN 0 NaN NaN 0 54898000 18879 117 12354 12358 -0.02418459682394314 HEFGAITF 8 Unmodified _HEFGAITF_ 0 0 0 ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant;ENSG00000023330|ENST00000484952|ALAS1 ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.226885 920.439217 0.19375 8.9363E-05 0.11203 5.1672E-05 0.30578 0.00014103 461.2268697432902 132.77 1.5109 127.97 127.42 128.93 -4.799 -0.050883 -9.5627E-05 NaN 93.883 125 42 5 NaN NaN NaN NaN 0 NaN NaN 0 51921000 18880 117 12354 12358 -0.02418459682394314 HEFKFMEQ 8 Unmodified _HEFKFMEQ_ 0 0 0 ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50 ENST00000471188.5_1_7:92887656-92969983:+|nuORF ENST00000471188.5_1_7:92887656-92969983:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.778564453125 2 548.250034 1094.48552 0.23863 0.00013083 -0.87156 -0.00047783 -0.63293 -0.000347 548.2496776555339 71.888 0.63141 71.888 71.529 72.16 0 23 17 2 0 0 0 0.4122 1 13964 13964 45.7 25.246 1 7560500 18881 977 12355 12359 18856 18856 -0.0579476284260636 HEFKFMEQ 8 Unmodified _HEFKFMEQ_ 0 0 0 ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50 ENST00000471188.5_1_7:92887656-92969983:+|nuORF ENST00000471188.5_1_7:92887656-92969983:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7672119140625 2 548.250034 1094.48552 0.1508 8.2677E-05 -0.14491 -7.9446E-05 0.0058939 3.2313E-06 548.2499358705713 75.652 0.69138 71.929 71.443 72.135 -3.7227 36 19 3 0 0 0 0.024605 1 14287 14287 107.1 56.245 1 8778500 18882 977 12355 12359 18857 18857 -0.0579476284260636 HEFKFMEQ 8 Unmodified _HEFKFMEQ_ 0 0 0 ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50 ENST00000471188.5_1_7:92887656-92969983:+|nuORF ENST00000471188.5_1_7:92887656-92969983:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.771484375 2 548.250034 1094.48552 0.33056 0.00018123 -0.30306 -0.00016615 0.027501 1.5077E-05 548.2496849255908 75.5 0.97253 71.866 71.367 72.34 -3.6337 38 27 2 0 0 0 0.95624 1 14309 14309 17.113 2.2746 1 8002900 18883 977 12355 12359 18858 18858 -0.0579476284260636 HEFLHEVPA 9 Unmodified _HEFLHEVPA_ 0 0 0 ENSG00000215305|ENST00000380445|VPS16;VPS16|p.M592Hfs*18|1|0.16|ENSG00000215305|chr20:2864410-2864411|-/T|frameshift_variant ENSG00000215305|ENST00000380445|VPS16 ENSG00000215305|ENST00000380445|VPS16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013244628906 3 360.182058 1077.52434 -0.29521 -0.00010633 0.23715 8.5416E-05 -0.05806 -2.0912E-05 360.18209217832646 67.184 0.66495 64.075 63.756 64.421 -3.1086 64 18 4 0 0 0 0.6427 1 13091 13091 10.151 1.995 1 31491000 18884 7744 12356 12360 18859 18859 -0.011317142165808036 HEFLHEVPAA 10 Unmodified _HEFLHEVPAA_ 0 0 0 ENSG00000215305|ENST00000380445|VPS16;VPS16|p.M592Hfs*18|1|0.16|ENSG00000215305|chr20:2864410-2864411|-/T|frameshift_variant ENSG00000215305|ENST00000380445|VPS16 ENSG00000215305|ENST00000380445|VPS16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3204345703125 2 575.288005 1148.56146 -0.13073 -7.5206E-05 0.41697 0.00023988 0.28624 0.00016467 575.2882471605318 72.908 0.82051 69.597 69.205 70.026 -3.3107 49 22 3 0 0 0 0.51199 2 14194 14194;14226 24.021 13.87 1 3949600 18885 7744 12357 12361 18860;18861 18860 -0.006880426707994047 HEFLHEVPAA 10 Unmodified _HEFLHEVPAA_ 0 0 0 ENSG00000215305|ENST00000380445|VPS16;VPS16|p.M592Hfs*18|1|0.16|ENSG00000215305|chr20:2864410-2864411|-/T|frameshift_variant ENSG00000215305|ENST00000380445|VPS16 ENSG00000215305|ENST00000380445|VPS16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3141479492188 2 575.288005 1148.56146 0.32544 0.00018722 -0.080349 -4.6224E-05 0.24509 0.000141 575.287951874986 73.269 0.85529 69.592 69.042 69.898 -3.6764 49 23 3 0 0 0 0.67319 1 13789 13789 13.906 4.3621 1 3911900 18886 7744 12357 12361 18862 18862 -0.006880426707994047 HEFLHEVPAA 10 Unmodified _HEFLHEVPAA_ 0 0 0 ENSG00000215305|ENST00000380445|VPS16;VPS16|p.M592Hfs*18|1|0.16|ENSG00000215305|chr20:2864410-2864411|-/T|frameshift_variant ENSG00000215305|ENST00000380445|VPS16 ENSG00000215305|ENST00000380445|VPS16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3353881835938 2 575.288005 1148.56146 0.37897 0.00021801 -0.23857 -0.00013724 0.1404 8.077E-05 575.2877398022647 73.153 0.87236 69.614 69.266 70.138 -3.5385 46 24 3 0 0 0 0.40256 1 13907 13907 30.637 20.486 1 3976200 18887 7744 12357 12361 18863 18863 -0.006880426707994047 HEFLHEVPAA 10 Unmodified _HEFLHEVPAA_ 0 0 0 ENSG00000215305|ENST00000380445|VPS16;VPS16|p.M592Hfs*18|1|0.16|ENSG00000215305|chr20:2864410-2864411|-/T|frameshift_variant ENSG00000215305|ENST00000380445|VPS16 ENSG00000215305|ENST00000380445|VPS16 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.288005 1148.56146 0.038071 2.1902E-05 0.032522 1.871E-05 0.070593 4.0611E-05 575.789507190565 69.57 0.78374 69.57 69.285 70.068 0 -0.023205 1.9716E-05 NaN 30.637 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 3469100 18888 7744 12357 12361 -0.006880426707994047 HEFTVYRM 8 Unmodified _HEFTVYRM_ 0 0 0 nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN nc|ENSG00000125912|Q969V3-2|NCLN nc|ENSG00000125912|Q969V3-2|NCLN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2589111328125 2 541.758027 1081.5015 0.58194 0.00031527 -0.48124 -0.00026071 0.1007 5.4555E-05 541.7578023705652 76.722 0.80535 76.722 76.413 77.218 0 48 22 3 0 0 0 0.83888 1 14947 14947 24.021 2.2739 1 6568400 18889 3404 12358 12362 18864 18864 -0.03599056605685291 HEFTVYRM 8 Unmodified _HEFTVYRM_ 0 0 0 nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN nc|ENSG00000125912|Q969V3-2|NCLN nc|ENSG00000125912|Q969V3-2|NCLN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2803955078125 2 541.758027 1081.5015 0.24579 0.00013316 0.087611 4.7464E-05 0.3334 0.00018062 541.7580934826937 80.292 0.81197 76.782 76.33 77.142 -3.5102 45 22 3 0 0 0 0.23681 1 15712 15712 41.84 7.7372 1 6078500 18890 3404 12358 12362 18865 18865 -0.03599056605685291 HEFTVYRM 8 Unmodified _HEFTVYRM_ 0 0 0 nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN nc|ENSG00000125912|Q969V3-2|NCLN nc|ENSG00000125912|Q969V3-2|NCLN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2658081054688 2 541.758027 1081.5015 0.018451 9.9957E-06 0.5312 0.00028778 0.54965 0.00029778 541.7582010441162 80.502 0.72331 76.662 76.218 76.942 -3.8392 51 20 3 0 0 0 0.44257 1 15268 15268 41.84 25.992 1 5613500 18891 3404 12358 12362 18866 18866 -0.03599056605685291 HEFTVYRM 8 Unmodified _HEFTVYRM_ 0 0 0 nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN nc|ENSG00000125912|Q969V3-2|NCLN nc|ENSG00000125912|Q969V3-2|NCLN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26025390625 2 541.758027 1081.5015 -0.079454 -4.3045E-05 0.56824 0.00030785 0.48879 0.0002648 541.7583068963883 80.331 0.73161 76.655 76.247 76.978 -3.676 54 20 4 0 0 0 0.0039758 1 15312 15312 115.69 71.285 1 6764800 18892 3404 12358 12362 18867 18867 -0.03599056605685291 HEGCYWLQGS 10 Unmodified _HEGCYWLQGS_ 0 0 0 REV__NOL11|p.Y314C|1|0.31|ENSG00000130935|chr17:67735910-67735910|A/G|missense_variant REV__NOL11|p.Y314C|1|0.31|ENSG00000130935|chr17:67735910-67735910|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2593383789062 2 590.248023 1178.48149 NaN NaN NaN NaN NaN NaN NaN 136.44 1 131.61 131.11 132.11 -4.8307 0 0 0 2.8426 1 26274 26274 0.043787 0 1 + 18893 24372 12359 12363 18868 18868 -0.10060852336323478 HEGDHSVP 8 Unmodified _HEGDHSVP_ 0 0 0 nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 439.2304992675781 2 439.193574 876.372594 NaN NaN NaN NaN NaN NaN NaN 82.131 1 78.257 77.757 78.757 -3.8736 0 0 0 0.22934 1 15601 15601 0.68139 0.42991 1 18894 12629 12360 12364 18869 18869 -0.07053695244280789 HEGEILQAF 9 Unmodified _HEGEILQAF_ 0 0 0 ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6 ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENST00000489684.2_1_3:49044864-49050780:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2616577148438 2 522.261456 1042.50836 0.18962 9.9033E-05 0.35403 0.00018489 0.54365 0.00028393 522.261549890146 116.98 0.63031 116.98 116.64 117.27 0 35 17 3 0 0 0 0.023387 3 23048 22999;23048;23097 88.904 38.971 1 5601000 18895 6573 12361 12365 18870;18871;18872 18871 -0.011194204534831442 HEGEILQAF 9 Unmodified _HEGEILQAF_ 0 0 0 ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6 ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENST00000489684.2_1_3:49044864-49050780:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2613525390625 2 522.261456 1042.50836 0.026714 1.3952E-05 0.011374 5.94E-06 0.038088 1.9892E-05 522.2613024707305 121.19 0.75227 116.64 116.25 117 -4.5476 37 20 2 0 0 0 0.057505 3 23883 23831;23883;23927 68.081 42.681 1 9445500 18896 6573 12361 12365 18873;18874;18875 18874 -0.011194204534831442 HEGEILQAF 9 Unmodified _HEGEILQAF_ 0 0 0 ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6 ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENST00000489684.2_1_3:49044864-49050780:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26123046875 2 522.261456 1042.50836 -0.11924 -6.2272E-05 0.1266 6.6117E-05 0.0073617 3.8447E-06 522.2614400652277 121.29 0.70652 116.61 116.2 116.91 -4.6873 46 19 3 0 0 0 0.0059038 2 23268 23268;23317 112.59 66.572 1 9197800 18897 6573 12361 12365 18876;18877 18876 -0.011194204534831442 HEGEILQAF 9 Unmodified _HEGEILQAF_ 0 0 0 ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6 ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENST00000489684.2_1_3:49044864-49050780:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2612915039062 2 522.261456 1042.50836 0.39614 0.00020689 -0.29293 -0.00015298 0.10321 5.3902E-05 522.2611322327034 121.14 0.82536 116.61 116.18 117 -4.5305 51 21 3 0 0 0 0.023387 3 23313 23268;23313;23371 88.904 42.883 1 9239600 18898 6573 12361 12365 18878;18879;18880 18879 -0.011194204534831442 HEGESVSY 8 Unmodified _HEGESVSY_ 0 0 0 ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7482604980469 2 454.193239 906.371926 0.9081 0.00041245 -0.64322 -0.00029215 0.26488 0.00012031 454.19296081852985 26.947 0.31271 25.165 24.96 25.272 -1.7821 12 8 2 0 0 0 0.11385 1 4766 4766 60.39 28.273 1 596460 18899 4296 12362 12366 18881 18881 -0.085005346839921 HEGFHKSR 8 Unmodified _HEGFHKSR_ 0 0 0 nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4 nc|ENSG00000136869|O00206-3|TLR4 nc|ENSG00000136869|O00206-3|TLR4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 333.0281982421875 3 333.170264 996.488962 -1.9212 -0.00064009 0.43048 0.00014342 -1.4907 -0.00049666 333.17034079731445 17.982 1.0066 16.468 15.84 16.846 -1.5148 60 28 3 0 0 0 1.0277 1 2586 2586 1.6526 1.6526 1 846060 18900 4045 12363 12367 18882 18882 -0.009423319537290809 HEGPTWLR 8 Unmodified _HEGPTWLR_ 0 0 0 REV__chrX:149713255-149714481|109|11.83|0.14|6.45|+|2|MAGEA11,MAGEA11|1 REV__chrX:149713255-149714481|109|11.83|0.14|6.45|+|2|MAGEA11,MAGEA11|1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.9996337890625 3 332.506764 994.498464 -0.54292 -0.00018053 0.29878 9.9346E-05 -0.24415 -8.118E-05 332.5068210784444 40.129 1.2071 37.495 36.485 37.692 -2.6348 55 33 2 0 0 0 1.0248 1 7289 7289 1.4819 0 1 889660 + 18901 13433 12364 12368 18883 18883 0.000994363317886382 HEGTAFPL 8 Unmodified _HEGTAFPL_ 0 0 0 REV__NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant REV__NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 436.2183532714844 2 436.21906 870.423567 NaN NaN NaN NaN NaN NaN NaN 87.991 1 87.991 87.491 88.491 0 0 0 0 0.21486 1 17171 17171 10.183 0.83596 1 + 18902 17072 12365 12369 18884 18884 -0.01682746199446683 HEGVLVNRAA 10 Unmodified _HEGVLVNRAA_ 0 0 0 REV__ENSG00000111816|ENST00000606080|FRK REV__ENSG00000111816|ENST00000606080|FRK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.074951171875 3 355.86484 1064.57269 -0.23539 -8.3768E-05 0.77738 0.00027664 0.54199 0.00019287 355.86523073671793 33.164 0.86836 30.846 30.593 31.461 -2.3175 38 24 3 0 0 0 0.89521 1 6136 6136 3.5871 0 1 2420800 + 18903 15264 12366 12370 18885 18885 0.042987794233113164 HEGVLVNRAA 10 Unmodified _HEGVLVNRAA_ 0 0 0 REV__ENSG00000111816|ENST00000606080|FRK REV__ENSG00000111816|ENST00000606080|FRK MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 355.86484 1064.57269 0.23715 8.4392E-05 0.7317 0.00026039 0.96885 0.00034478 355.8651272445895 33.062 0.70151 30.915 30.655 31.357 -2.1468 0.029016 -0.0002502 NaN 3.5871 41 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2006800 + 18904 15264 12366 12370 0.042987794233113164 HEGVLVNRAA 10 Unmodified _HEGVLVNRAA_ 0 0 0 REV__ENSG00000111816|ENST00000606080|FRK REV__ENSG00000111816|ENST00000606080|FRK MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 355.86484 1064.57269 -0.2698 -9.6013E-05 1.4412 0.00051287 1.1714 0.00041686 355.8653151865432 33.113 0.71941 30.897 30.669 31.389 -2.2158 0.011158 0.00050725 NaN 3.5871 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1757300 + 18905 15264 12366 12370 0.042987794233113164 HEHDPPLEA 9 Unmodified _HEHDPPLEA_ 0 0 0 REV__nc|ENSG00000078269|O15056-2|SYNJ2 REV__nc|ENSG00000078269|O15056-2|SYNJ2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.282470703125 2 522.740888 1043.46722 -0.1866 -9.7543E-05 -0.33494 -0.00017509 -0.52154 -0.00027263 522.7407437565624 33.288 0.72747 30.97 30.698 31.426 -2.3175 44 19 3 0 0 0 0.49001 1 6101 6101 28.487 0 1 3789500 + 18906 14377 12367 12371 18886 18886 -0.0527718149296561 HEHDPPLEA 9 Unmodified _HEHDPPLEA_ 0 0 0 REV__nc|ENSG00000078269|O15056-2|SYNJ2 REV__nc|ENSG00000078269|O15056-2|SYNJ2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2708129882812 2 522.740888 1043.46722 -0.41794 -0.00021847 -0.084771 -4.4313E-05 -0.50271 -0.00026279 522.7408955139613 33.16 0.73733 31.014 30.759 31.496 -2.1468 40 20 3 0 0 0 0.65155 1 5767 5767 15.847 0 1 4625900 + 18907 14377 12367 12371 18887 18887 -0.0527718149296561 HEHDQLLA 8 Unmodified _HEHDQLLA_ 0 0 0 REV__ENSG00000015133|ENST00000389857|CCDC88C REV__ENSG00000015133|ENST00000389857|CCDC88C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23699951171875 2 481.738148 961.461744 0.25843 0.00012449 -0.12744 -6.1394E-05 0.13098 6.31E-05 481.7380731195487 28.53 0.59218 26.534 26.204 26.797 -1.9962 35 16 3 0 0 0 0.72565 1 4815 4815 26.884 0 1 3823800 + 18908 13957 12368 12372 18888 18888 -0.020528602847548427 HEHHTTIVA 9 Unmodified _HEHHTTIVA_ 0 0 0 ENST00000454830.6_1_15:74914310-74922221:+|nuORF;ENSG00000179335|ENST00000395066|CLK3;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3 ENST00000454830.6_1_15:74914310-74922221:+|nuORF ENST00000454830.6_1_15:74914310-74922221:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6781616210938 2 522.764697 1043.51484 -1.0825 -0.00056588 1.2805 0.00066939 0.19802 0.00010352 522.7653950184682 18.636 0.21222 17.121 16.986 17.198 -1.5148 16 5 4 0 0 0 0.55979 1 2761 2761 15.847 4.7327 1 5112000 18909 6626 12369 12373 18889 18889 -0.005174825021185825 HEHQANLL 8 Unmodified _HEHQANLL_ 0 0 0 SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant;nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2460632324219 2 481.246141 960.477728 8.7199E-05 4.1964E-08 0.0040252 1.9371E-06 0.0041124 1.9791E-06 481.246088002414 33.282 0.48409 33.282 33.059 33.544 0 32 13 3 0 0 0 0.44108 1 6088 6088 30.637 2.1497 1 3399000 18910 2933 12370 12374 18890 18890 -0.0040915404786119325 HEHQANLL 8 Unmodified _HEHQANLL_ 0 0 0 SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant;nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7881774902344 2 481.246141 960.477728 -0.23105 -0.00011119 0.079554 3.8285E-05 -0.1515 -7.2908E-05 481.2461495984708 35.221 0.45699 32.828 32.563 33.02 -2.3938 21 12 2 0 0 0 0.10891 2 6475 6475;6502 61.357 19.263 1 3021400 18911 2933 12370 12374 18891;18892 18891 -0.0040915404786119325 HEHQANLL 8 Unmodified _HEHQANLL_ 0 0 0 SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant;nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24609375 2 481.246141 960.477728 0.26442 0.00012725 -0.44211 -0.00021277 -0.17769 -8.5514E-05 481.24580816094124 35.169 0.54945 32.893 32.591 33.141 -2.2766 32 15 3 0 0 0 0.31324 2 6191 6189;6191 36.127 11.914 1 2390600 18912 2933 12370 12374 18893;18894 18894 -0.0040915404786119325 HEHQANLL 8 Unmodified _HEHQANLL_ 0 0 0 SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant;nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant SFPQ|p.R536C|1|0.22|ENSG00000116560|chr1:35189192-35189192|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 481.246141 960.477728 8.7199E-05 4.1964E-08 0.0040252 1.9371E-06 0.0041124 1.9791E-06 481.246088002414 33.282 0.48409 33.282 33.059 33.544 0 0 0 NaN 30.637 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3399000 18913 2933 12370 12374 -0.0040915404786119325 HEIGCAFP 8 Unmodified _HEIGCAFP_ 0 0 0 REV__ENSG00000178974|ENST00000313833|FBXO34 REV__ENSG00000178974|ENST00000313833|FBXO34 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22540283203125 2 437.199813 872.385073 NaN NaN NaN NaN NaN NaN NaN 26.269 1 24.347 23.847 24.847 -1.9222 0 0 0 0.21486 1 4344 4344 5.7604 0 1 + 18914 18630 12371 12375 18895 18895 -0.056223751056108995 HEIGHGIAA 9 Unmodified _HEIGHGIAA_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7530822753906 2 452.735409 903.456264 0.30533 0.00013823 -0.24836 -0.00011244 0.056968 2.5791E-05 452.7352394802928 25.708 0.66451 25.708 25.425 26.09 0 47 18 4 0 0 0 0.071377 1 4484 4484 64.236 41.088 1 40777000 18915 1085 12372 12376 18896 18896 0.0006746092341245458 HEIGHGIAA 9 Unmodified _HEIGHGIAA_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7688293457031 2 452.735409 903.456264 0.82922 0.00037542 -0.8198 -0.00037115 0.0094164 4.2632E-06 452.7350167011911 27.408 0.67291 25.626 25.375 26.048 -1.7821 44 18 3 0 0 0 0.55979 1 4905 4905 15.847 1.9411 1 36231000 18916 1085 12372 12376 18897 18897 0.0006746092341245458 HEIGHGIAA 9 Unmodified _HEIGHGIAA_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 452.735409 903.456264 0.15126 6.8483E-05 -0.12566 -5.6889E-05 0.025609 1.1594E-05 452.7353046122033 27.286 0.52971 25.531 25.3 25.83 -1.7552 -0.083827 0.00020946 NaN 64.236 38 14 3 NaN NaN NaN NaN 0 NaN NaN 0 50724000 18917 1085 12372 12376 0.0006746092341245458 HEIGHGIAA 9 Unmodified _HEIGHGIAA_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 452.735409 903.456264 0.13561 6.1395E-05 -0.16942 -7.6705E-05 -0.033816 -1.531E-05 452.7353144093389 27.517 0.56903 25.594 25.363 25.932 -1.9235 -0.020602 0.00016983 NaN 64.236 47 15 4 NaN NaN NaN NaN 0 NaN NaN 0 33331000 18918 1085 12372 12376 0.0006746092341245458 HEIHRRNAF 9 Unmodified _HEIHRRNAF_ 0 0 0 ENSG00000187815|ENST00000372706|ZFP69 ENSG00000187815|ENST00000372706|ZFP69 ENSG00000187815|ENST00000372706|ZFP69 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2713012695312 2 590.310138 1178.60572 NaN NaN NaN NaN NaN NaN NaN 106.38 1 102.12 101.62 102.62 -4.2638 0 0 0 0.23508 1 20939 20939 12.532 0.89125 1 18919 7131 12373 12377 18898 18898 0.023564062660170748 HEIILSAF 8 Unmodified _HEIILSAF_ 0 0 0 ENST00000492942.1_1_2:153435413-153463948:+|nuORF;FMNL2|p.D377*|1|0.22|ENSG00000157827|chr2:152614911-152614912|-/T|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2 ENST00000492942.1_1_2:153435413-153463948:+|nuORF ENST00000492942.1_1_2:153435413-153463948:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2577819824219 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 142.47 1 137.44 136.94 137.94 -5.0261 0 0 0 0.14536 1 27462 27462 38.151 17.28 1 18920 5142 12374 12378 18899 18899 0.034706863857991266 HEIILSAF 8 Unmodified _HEIILSAF_ 0 0 0 ENST00000492942.1_1_2:153435413-153463948:+|nuORF;FMNL2|p.D377*|1|0.22|ENSG00000157827|chr2:152614911-152614912|-/T|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2 ENST00000492942.1_1_2:153435413-153463948:+|nuORF ENST00000492942.1_1_2:153435413-153463948:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2584228515625 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 142.32 1 137.42 136.92 137.92 -4.8982 0 0 0 0.10184 1 27459 27459 44.407 10.22 1 18921 5142 12374 12378 18900 18900 0.034706863857991266 HEILELII 8 Unmodified _HEILELII_ 0 0 0 ENST00000561685.1_1_16:15168568-15177423:-|nuORF;nc|ENSG00000085721|Q9NYV6-2|RRN3;nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3 ENST00000561685.1_1_16:15168568-15177423:-|nuORF ENST00000561685.1_1_16:15168568-15177423:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26678466796875 2 490.294768 978.574983 0.22963 0.00011259 -0.10017 -4.9112E-05 0.12946 6.3474E-05 490.29470296068286 24.518 0.41006 24.518 24.337 24.748 0 17 11 2 0 0 0 1.0147 1 4225 4225 5.2307 0 1 1535000 18922 1680 12375 12379 18901 18901 0.084838151084341 HEILVSDF 8 Unmodified _HEILVSDF_ 0 0 0 POC5|p.E345Sfs*7|1|0.07|ENSG00000152359|chr5:75689109-75689109|T/-|frameshift_variant;nc|ENSG00000152359|Q8NA72-2|POC5;nc|ENSG00000152359|Q8NA72-3|POC5;ENSG00000152359|ENST00000428202|POC5 POC5|p.E345Sfs*7|1|0.07|ENSG00000152359|chr5:75689109-75689109|T/-|frameshift_variant POC5|p.E345Sfs*7|1|0.07|ENSG00000152359|chr5:75689109-75689109|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24798583984375 2 480.245275 958.475997 0.21675 0.00010409 -0.12096 -5.8092E-05 0.095785 4.6E-05 480.2451675298114 117.71 0.70501 113.21 112.89 113.6 -4.502 51 19 3 0 0 0 0.039878 2 23226 23173;23226 101.72 54.801 1 12816000 18923 4917 12376 12380 18902;18903 18903 -0.0049020785647826415 HEILVSDF 8 Unmodified _HEILVSDF_ 0 0 0 POC5|p.E345Sfs*7|1|0.07|ENSG00000152359|chr5:75689109-75689109|T/-|frameshift_variant;nc|ENSG00000152359|Q8NA72-2|POC5;nc|ENSG00000152359|Q8NA72-3|POC5;ENSG00000152359|ENST00000428202|POC5 POC5|p.E345Sfs*7|1|0.07|ENSG00000152359|chr5:75689109-75689109|T/-|frameshift_variant POC5|p.E345Sfs*7|1|0.07|ENSG00000152359|chr5:75689109-75689109|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24810791015625 2 480.245275 958.475997 0.43415 0.0002085 -0.24405 -0.0001172 0.1901 9.1296E-05 480.24510983376985 117.8 0.99321 113.19 112.82 113.81 -4.6106 59 27 3 0 0 0 0.039878 1 22617 22617 101.72 54.801 1 9676200 18924 4917 12376 12380 18904 18904 -0.0049020785647826415 HEILVSDF 8 Unmodified _HEILVSDF_ 0 0 0 POC5|p.E345Sfs*7|1|0.07|ENSG00000152359|chr5:75689109-75689109|T/-|frameshift_variant;nc|ENSG00000152359|Q8NA72-2|POC5;nc|ENSG00000152359|Q8NA72-3|POC5;ENSG00000152359|ENST00000428202|POC5 POC5|p.E345Sfs*7|1|0.07|ENSG00000152359|chr5:75689109-75689109|T/-|frameshift_variant POC5|p.E345Sfs*7|1|0.07|ENSG00000152359|chr5:75689109-75689109|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.245275 958.475997 0.40629 0.00019512 -0.32225 -0.00015476 0.084042 4.0361E-05 480.2450727127396 117.65 0.78273 113.25 112.86 113.64 -4.4088 0.028972 -9.5045E-05 NaN 101.72 53 21 3 NaN NaN NaN NaN 0 NaN NaN 0 10102000 18925 4917 12376 12380 -0.0049020785647826415 HEIQVEPLD 9 Unmodified _HEIQVEPLD_ 0 0 0 REV__nc|ENSG00000075292|Q14966-3|ZNF638 REV__nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2728271484375 2 540.272021 1078.52949 0.10046 5.4275E-05 -0.16644 -8.9922E-05 -0.065979 -3.5647E-05 540.2719203766894 69.779 1.2727 66.599 65.798 67.071 -3.1796 106 35 5 0 0 0 0.52027 1 13428 13428 25.399 8.457 1 139400000 + 18926 14328 12377 12381 18905 18905 -0.006634551446268233 HEIRKLLSR 9 Unmodified _HEIRKLLSR_ 0 0 0 REV__tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1 REV__tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.318603515625 2 576.354014 1150.69348 NaN NaN NaN NaN NaN NaN NaN 105.93 1 101.84 101.34 102.34 -4.0913 0 0 0 0.19684 1 20375 20375 0.20686 0.19359 1 + 18927 25011 12378 12382 18906 18906 0.1241560713679064 HEISEGNVA 9 Unmodified _HEISEGNVA_ 0 0 0 ENSG00000173473|ENST00000254480|SMARCC1 ENSG00000173473|ENST00000254480|SMARCC1 ENSG00000173473|ENST00000254480|SMARCC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7289733886719 2 478.227613 954.440674 0.037218 1.7799E-05 -0.32292 -0.00015443 -0.2857 -0.00013663 478.2275012898465 24.905 0.62152 23.371 23.129 23.751 -1.5342 30 17 2 0 0 0 0.46882 1 4056 4056 21.537 5.3879 1 1652100 18928 6295 12379 12383 18907 18907 -0.03836870384282065 HEKDLVQPI 9 Unmodified _HEKDLVQPI_ 0 0 0 nc|ENSG00000183087|Q14393-5|GAS6;nc|ENSG00000183087|Q14393-4|GAS6;ENST00000480426.5_1_13:114523839-114535869:-|nuORF;ENST00000610073.1_1_13:114523839-114538639:-|nuORF;nc|ENSG00000183087|Q14393-3|GAS6;ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6 nc|ENSG00000183087|Q14393-5|GAS6 nc|ENSG00000183087|Q14393-5|GAS6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 122.69 1 122.69 122.19 123.19 0 0 0 0 0.23508 1 24180 24180 8.1555 0.54658 1 18929 6828 12380 12384 18908 18908 0.046171279889904326 HEKELAAT 8 Unmodified _HEKELAAT_ 0 0 0 REV__ENST00000538768.2_1_16:31138259-31142577:+|nuORF REV__ENST00000538768.2_1_16:31138259-31142577:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.3438720703125 2 449.735074 897.455596 0.30755 0.00013832 -0.69964 -0.00031465 -0.39209 -0.00017633 449.73495746663815 37.533 0.35375 37.533 37.363 37.717 0 12 9 2 0 0 0 1.0231 1 6963 6963 7.9102 5.3327 1 528450 + 18930 14888 12381 12385 18909 18909 0.0027662148370382056 HEKELAAT 8 Unmodified _HEKELAAT_ 0 0 0 REV__ENST00000538768.2_1_16:31138259-31142577:+|nuORF REV__ENST00000538768.2_1_16:31138259-31142577:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 449.735074 897.455596 -0.36695 -0.00016503 0.33851 0.00015224 -0.028435 -1.2788E-05 449.7352629096488 40.01 0.46301 37.461 37.241 37.704 -2.5491 -0.0001368 0.00036916 NaN 7.9102 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 716800 + 18931 14888 12381 12385 0.0027662148370382056 HEKELAAT 8 Unmodified _HEKELAAT_ 0 0 0 REV__ENST00000538768.2_1_16:31138259-31142577:+|nuORF REV__ENST00000538768.2_1_16:31138259-31142577:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.735074 897.455596 -0.045083 -2.0275E-05 0.064577 2.9043E-05 0.019494 8.7673E-06 449.73520793089097 39.993 0.38575 37.454 37.254 37.64 -2.5398 -0.0079289 0.00012276 NaN 7.9102 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1014700 + 18932 14888 12381 12385 0.0027662148370382056 HEKELAAT 8 Unmodified _HEKELAAT_ 0 0 0 REV__ENST00000538768.2_1_16:31138259-31142577:+|nuORF REV__ENST00000538768.2_1_16:31138259-31142577:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 449.735074 897.455596 0.044638 2.0075E-05 -0.24071 -0.00010826 -0.19608 -8.8182E-05 449.7350507008577 39.887 0.41599 37.398 37.198 37.614 -2.4896 -0.063577 -0.00015184 NaN 7.9102 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 431620 + 18933 14888 12381 12385 0.0027662148370382056 HEKEWQAREKQ 11 Unmodified _HEKEWQAREKQ_ 0 0 0 REV__LMNTD2|p.D349Tfs*14|1|0.37|ENSG00000185522|chr11:556520-556520|C/-|frameshift_variant REV__LMNTD2|p.D349Tfs*14|1|0.37|ENSG00000185522|chr11:556520-556520|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2662048339844 3 490.247901 1467.72187 NaN NaN NaN NaN NaN NaN NaN 153.18 1 148.41 147.91 148.91 -4.7684 0 0 0 0.22632 1 30440 30440 1.4551 0 1 + 18934 18974 12382 12386 18910 18910 0.006722602553963952 HEKIFRTPP 9 Unmodified _HEKIFRTPP_ 0 0 0 ENST00000506020.5_1_4:148867718-148993229:+|nuORF;ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10 ENST00000506020.5_1_4:148867718-148993229:+|nuORF ENST00000506020.5_1_4:148867718-148993229:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.20648193359375 3 375.545219 1123.61383 NaN NaN NaN NaN NaN NaN NaN 35.932 1 33.538 33.038 34.038 -2.3938 0 0 0 0.22082 1 6628 6628 17.443 10.341 1 18935 201 12383 12387 18911 18911 0.056965404627817406 HEKKGLCR 8 Unmodified _HEKKGLCR_ 0 0 0 ENST00000434735.6_1_12:109915511-109921459:+|nuORF;ENST00000540230.5_1_12:109915511-109921459:+|nuORF ENST00000434735.6_1_12:109915511-109921459:+|nuORF ENST00000434735.6_1_12:109915511-109921459:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1801452636719 3 324.179883 969.517819 NaN NaN NaN NaN NaN NaN NaN 60.994 1 58.061 57.561 58.561 -2.9333 0 0 0 0.21486 1 11746 11746 3.9444 2.2918 1 18936 9819 12384 12388 18912 18912 0.0318406935106168 HEKLLQDY 8 Unmodified _HEKLLQDY_ 0 0 0 REV__ENST00000482371.5_1_7:107224374-107269308:+|nuORF REV__ENST00000482371.5_1_7:107224374-107269308:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.07330322265625 3 349.181946 1044.52401 -0.59734 -0.00020858 0.54117 0.00018897 -0.056168 -1.9613E-05 349.18216264043275 40.481 1.4121 37.991 37.649 39.062 -2.4896 145 39 6 0 0 0 0.72861 1 7196 7196 7.2892 2.3922 1 212940000 + 18937 14338 12385 12389 18913 18913 0.0035286606357658457 HEKLLQDY 8 Unmodified _HEKLLQDY_ 0 0 0 REV__ENST00000482371.5_1_7:107224374-107269308:+|nuORF REV__ENST00000482371.5_1_7:107224374-107269308:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 349.181946 1044.52401 -0.21174 -7.3936E-05 0.18777 6.5565E-05 -0.023974 -8.3714E-06 349.1820785606603 38.338 1.6518 38.338 37.858 39.509 0 0.22749 -7.3311E-05 NaN 7.2892 115 46 4 NaN NaN NaN NaN 0 NaN NaN 0 248930000 + 18938 14338 12385 12389 0.0035286606357658457 HEKLLQDY 8 Unmodified _HEKLLQDY_ 0 0 0 REV__ENST00000482371.5_1_7:107224374-107269308:+|nuORF REV__ENST00000482371.5_1_7:107224374-107269308:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 349.181946 1044.52401 -0.49683 -0.00017349 0.37054 0.00012939 -0.12629 -4.4098E-05 349.1821282008095 40.73 0.98136 38.095 37.729 38.71 -2.6348 -0.014881 0.00011816 NaN 7.2892 104 27 5 NaN NaN NaN NaN 0 NaN NaN 0 290070000 + 18939 14338 12385 12389 0.0035286606357658457 HEKLLQDY 8 Unmodified _HEKLLQDY_ 0 0 0 REV__ENST00000482371.5_1_7:107224374-107269308:+|nuORF REV__ENST00000482371.5_1_7:107224374-107269308:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 349.181946 1044.52401 -0.015727 -5.4917E-06 -0.091571 -3.1975E-05 -0.1073 -3.7467E-05 349.1819301444243 40.556 1.7917 38.017 37.675 39.467 -2.5398 -0.093741 -0.00036593 NaN 7.2892 134 50 6 NaN NaN NaN NaN 0 NaN NaN 0 291050000 + 18940 14338 12385 12389 0.0035286606357658457 HEKLLQDY 8 Unmodified _HEKLLQDY_ 0 0 0 REV__ENST00000482371.5_1_7:107224374-107269308:+|nuORF REV__ENST00000482371.5_1_7:107224374-107269308:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 349.181946 1044.52401 -0.59734 -0.00020858 0.54117 0.00018897 -0.056168 -1.9613E-05 349.18216264043275 40.481 1.4121 37.991 37.649 39.062 -2.4896 -0.11887 0.0002969 NaN 7.2892 145 39 6 NaN NaN NaN NaN 0 NaN NaN 0 212940000 + 18941 14338 12385 12389 0.0035286606357658457 HEKLNLPVE 9 Unmodified _HEKLNLPVE_ 0 0 0 PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant;PARPBP|p.N533Mfs*19|1|0.15|ENSG00000185480|chr12:102196145-102196145|A/-|frameshift_variant;ENSG00000185480|ENST00000327680|PARPBP;PARPBP|p.G278Vfs*6|1|0.35|ENSG00000185480|chr12:102175490-102175490|G/-|frameshift_variant;nc|ENSG00000185480|Q9NWS1-7|PARPBP;nc|ENSG00000185480|Q9NWS1-4|PARPBP;nc|ENSG00000185480|Q9NWS1-3|PARPBP;ENST00000541668.5_1_12:102514215-102548625:+|nuORF;ENST00000392914.3_1_12:102517666-102545686:+|nuORF;nc|ENSG00000185480|Q9NWS1-6|PARPBP PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant;nc|ENSG00000185480|Q9NWS1-6|PARPBP PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 63.301 1 63.301 62.801 63.801 0 0 0 0 0.23508 1 12169 12169 12.873 0.69786 1 18942 6994;12512 12386 12390 18914 18914 0.046171279889904326 HEKLVQLY 8 Unmodified _HEKLVQLY_ 0 0 0 ENST00000478995.1_1_X:100611030-100611776:-|nuORF;BTK|p.A638Efs*11|1|0.06|ENSG00000010671|chrX:101349952-101349952|G/-|frameshift_variant;ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK;ENST00000467556.1_1_20:36028555-36030207:+|nuORF;nc|ENSG00000197122|P12931-3|SRC;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC ENST00000478995.1_1_X:100611030-100611776:-|nuORF;nc|ENSG00000197122|P12931-3|SRC nc|ENSG00000197122|P12931-3|SRC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.17620849609375 3 343.862437 1028.56548 -0.36375 -0.00012508 0.37523 0.00012903 0.011481 3.9478E-06 343.86245195208255 74.043 0.65152 70.678 70.299 70.951 -3.3643 27 18 2 0 0 0 0.74818 1 14442 14442 7.2892 0 1 1032300 18943 344;12539 12387 12391 18915 18915 0.05234046822897653 HEKLVQLY 8 Unmodified _HEKLVQLY_ 0 0 0 ENST00000478995.1_1_X:100611030-100611776:-|nuORF;BTK|p.A638Efs*11|1|0.06|ENSG00000010671|chrX:101349952-101349952|G/-|frameshift_variant;ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK;ENST00000467556.1_1_20:36028555-36030207:+|nuORF;nc|ENSG00000197122|P12931-3|SRC;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC ENST00000478995.1_1_X:100611030-100611776:-|nuORF;nc|ENSG00000197122|P12931-3|SRC nc|ENSG00000197122|P12931-3|SRC MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 343.862437 1028.56548 -0.49857 -0.00017144 0.44933 0.00015451 -0.049235 -1.693E-05 343.8625405239598 71.001 0.44743 71.001 70.8 71.248 0 0.18128 0.00015282 NaN 7.2892 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 821200 18944 344;12539 12387 12391 0.05234046822897653 HEKLVQLY 8 Unmodified _HEKLVQLY_ 0 0 0 ENST00000478995.1_1_X:100611030-100611776:-|nuORF;BTK|p.A638Efs*11|1|0.06|ENSG00000010671|chrX:101349952-101349952|G/-|frameshift_variant;ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK;ENST00000467556.1_1_20:36028555-36030207:+|nuORF;nc|ENSG00000197122|P12931-3|SRC;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC ENST00000478995.1_1_X:100611030-100611776:-|nuORF;nc|ENSG00000197122|P12931-3|SRC nc|ENSG00000197122|P12931-3|SRC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 343.862437 1028.56548 -0.32873 -0.00011304 0.14149 4.8653E-05 -0.18724 -6.4386E-05 343.86242196264726 74.375 0.6612 70.781 70.362 71.023 -3.594 -0.039511 -0.00016475 NaN 7.2892 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1272000 18945 344;12539 12387 12391 0.05234046822897653 HEKQIEPL 8 Unmodified _HEKQIEPL_ 0 0 0 REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.1903076171875 3 331.850308 992.529095 -0.74421 -0.00024697 0.76419 0.0002536 0.019982 6.6311E-06 331.8503883203347 63.349 0.66178 63.349 62.945 63.607 0 29 18 2 0 0 0 0.76728 1 12198 12198 3.9444 0.3479 1 1339300 + 18946 15353 12388 12392 18916 18916 0.032531699261767244 HEKQIEPL 8 Unmodified _HEKQIEPL_ 0 0 0 REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.1972961425781 3 331.850308 992.529095 -0.37049 -0.00012295 0.51236 0.00017003 0.14187 4.7079E-05 331.85042023287224 66.67 0.6591 63.343 62.989 63.648 -3.3268 34 18 2 0 0 0 1.0243 1 12514 12514 7.2892 1.5574 1 1633600 + 18947 15353 12388 12392 18917 18917 0.032531699261767244 HEKYDNSFKII 11 Unmodified _HEKYDNSFKII_ 0 0 0 ENST00000503632.1_1_19:47061900-47062413:+|nuORF ENST00000503632.1_1_19:47061900-47062413:+|nuORF ENST00000503632.1_1_19:47061900-47062413:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2412414550781 3 465.241865 1392.70376 NaN NaN NaN NaN NaN NaN NaN 63.537 1 60.539 60.039 61.039 -2.9975 0 0 0 0.22632 1 12281 12281 0.00056442 0 1 18948 10645 12389 12393 18918 18918 0.02312125280695909 HELCFLEWC 9 Unmodified _HELCFLEWC_ 0 0 0 REV__TUBA8|p.F53Sfs*15|1|0.31|ENSG00000183785|chr22:18121629-18121629|T/-|frameshift_variant REV__TUBA8|p.F53Sfs*15|1|0.31|ENSG00000183785|chr22:18121629-18121629|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2517700195312 2 590.25172 1178.48889 NaN NaN NaN NaN NaN NaN NaN 18.481 1 17.17 16.67 17.67 -1.3109 0 0 0 0.23508 1 3004 3004 7.9102 0 1 + 18949 18865 12390 12394 18919 18919 -0.09321836060257738 HELGKEKIVEK 11 Unmodified _HELGKEKIVEK_ 0 0 0 REV__ENST00000518584.5_1_8:110346694-110352812:+|nuORF REV__ENST00000518584.5_1_8:110346694-110352812:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2281799316406 3 437.253993 1308.74015 0.54892 0.00024002 1.2592 0.0005506 1.8081 0.00079062 437.58879956550777 106.42 0.20344 102.33 102.19 102.4 -4.0913 6 5 2 0 0 0 0.89084 1 20471 20471 0.00056442 0 1 325330 + 18950 15624 12391 12395 18920 18920 0.09813002177384078 HELGKSPLATV 11 Unmodified _HELGKSPLATV_ 0 0 0 REV__nc|ENSG00000165409|P16473|TSHR REV__nc|ENSG00000165409|P16473|TSHR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.326904296875 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 106.18 1 102.09 101.59 102.59 -4.0913 0 0 0 0.20277 1 20415 20415 18.146 0 1 + 18951 17767 12392 12396 18921 18921 0.06533086051786086 HELGLIIETA 10 Unmodified _HELGLIIETA_ 0 0 0 REV__ENSG00000100077|ENST00000324198|GRK3 REV__ENSG00000100077|ENST00000324198|GRK3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7742919921875 2 548.305864 1094.59717 -0.028983 -1.5892E-05 -0.14979 -8.213E-05 -0.17877 -9.8022E-05 548.3057421307884 41.686 0.49175 39.035 38.829 39.321 -2.651 36 13 3 0 0 0 0.871 1 7472 7472 3.2813 0 1 2773600 + 18952 14662 12393 12397 18922 18922 0.05365994786211559 HELITDVHM 9 Unmodified _HELITDVHM_ 0 0 0 REV__ENST00000602404.5_1_22:42482139-42482169:-|nuORF REV__ENST00000602404.5_1_22:42482139-42482169:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77099609375 2 547.768591 1093.52263 -0.22364 -0.0001225 2.7489 0.0015057 2.5252 0.0013832 547.7693890245188 107.08 1.7112 102.76 101.67 103.38 -4.32 106 48 4 0 0 0 0.48644 1 20968 20968 20.454 6.5476 1 5866600 + 18953 23427 12394 12398 18923 18923 -0.020390912968423436 HELKFRSARYS 11 Unmodified _HELKFRSARYS_ 0 0 0 nc|ENSG00000171126|Q8TAE7-2|KCNG3;ENSG00000171126|ENST00000306078|KCNG3 nc|ENSG00000171126|Q8TAE7-2|KCNG3 nc|ENSG00000171126|Q8TAE7-2|KCNG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2483215332031 3 465.249354 1392.72623 -0.40481 -0.00018834 -0.74201 -0.00034522 -1.1468 -0.00053355 465.24894212397754 106.18 0.59434 101.91 101.66 102.25 -4.2638 28 16 2 0 0 0 0.62176 2 20956 20956;20959 4.7159 2.4632 1 1926200 18954 6124 12395 12399 18924;18925 18924 0.045577694689882264 HELKFRSARYS 11 Unmodified _HELKFRSARYS_ 0 0 0 nc|ENSG00000171126|Q8TAE7-2|KCNG3;ENSG00000171126|ENST00000306078|KCNG3 nc|ENSG00000171126|Q8TAE7-2|KCNG3 nc|ENSG00000171126|Q8TAE7-2|KCNG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2491455078125 3 465.249354 1392.72623 -0.0078886 -3.6702E-06 -1.2507 -0.00058187 -1.2586 -0.00058554 465.24871159652224 106.37 0.62028 102 101.65 102.27 -4.3764 29 17 2 0 0 0 0.65903 1 20448 20448 0.0059557 0 1 2528900 18955 6124 12395 12399 18926 18926 0.045577694689882264 HELKVHEM 8 Unmodified _HELKVHEM_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3;ENST00000338427.10_1_7:44425612-44442312:-|nuORF ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.0115966796875 3 341.507777 1021.5015 -0.34482 -0.00011776 0.050404 1.7213E-05 -0.29441 -0.00010054 341.5078477367036 23.152 0.5873 23.152 22.927 23.514 0 30 16 3 0 0 0 1.0243 1 3928 3928 7.2892 3.3448 1 1320400 18956 1115 12396 12400 18927 18927 -0.00839056605695987 HELKVHEM 8 Unmodified _HELKVHEM_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3;ENST00000338427.10_1_7:44425612-44442312:-|nuORF ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 341.507777 1021.5015 -0.88449 -0.00030206 0.4854 0.00016577 -0.39909 -0.00013629 341.50805764858177 24.948 0.51721 23.094 22.846 23.364 -1.8534 -0.029072 0.00022244 NaN 7.2892 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1381300 18957 1115 12396 12400 -0.00839056605695987 HELLLTRL 8 Unmodified _HELLLTRL_ 0 0 0 REV__ENSG00000162621|ENST00000294635|LRRC53 REV__ENSG00000162621|ENST00000294635|LRRC53 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.196044921875 3 332.206315 993.597115 0.27403 9.1033E-05 -0.39709 -0.00013191 -0.12306 -4.0882E-05 332.20616655479586 66.627 0.77332 63.131 62.795 63.568 -3.4965 28 21 2 0 0 0 0.74818 1 12436 12436 7.2892 0 1 990940 + 18958 17509 12397 12401 18928 18928 0.10006039576830972 HELPERSS 8 Unmodified _HELPERSS_ 0 0 0 REV__nc|ENSG00000131188|Q8TB68-2|PRR7 REV__nc|ENSG00000131188|Q8TB68-2|PRR7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 477.734619140625 2 477.735606 953.456658 NaN NaN NaN NaN NaN NaN NaN 55.78 1 52.896 52.396 53.396 -2.8837 0 0 0 0.21486 1 10680 10680 9.3474 0.75416 1 + 18959 16060 12398 12402 18929 18929 -0.021931641473884156 HELPRIHKA 9 Unmodified _HELPRIHKA_ 0 0 0 nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L nc|ENSG00000009413|O60673-2|REV3L nc|ENSG00000009413|O60673-2|REV3L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.1889343261719 3 367.548964 1099.62506 -0.26 -9.5562E-05 0.28797 0.00010584 0.02797 1.028E-05 367.54907605913684 20.177 0.41993 18.852 18.629 19.049 -1.3251 27 11 3 0 0 0 0.38759 1 3105 3105 17.113 15.371 1 809380 18960 1051 12399 12403 18930 18930 0.07923362556925895 HELPRIHKA 9 Unmodified _HELPRIHKA_ 0 0 0 nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L nc|ENSG00000009413|O60673-2|REV3L nc|ENSG00000009413|O60673-2|REV3L MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 367.548964 1099.62506 -0.25193 -9.2596E-05 0.26812 9.8547E-05 0.016191 5.9511E-06 367.5490388025997 18.672 0.42077 18.672 18.437 18.858 0 -0.1692 1.064E-05 NaN 17.113 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 582720 18961 1051 12399 12403 0.07923362556925895 HELPRIHKA 9 Unmodified _HELPRIHKA_ 0 0 0 nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L nc|ENSG00000009413|O60673-2|REV3L nc|ENSG00000009413|O60673-2|REV3L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 367.548964 1099.62506 0.032092 1.1795E-05 0.2196 8.0714E-05 0.25169 9.2509E-05 367.5490192960552 20.397 0.38657 19.001 18.76 19.146 -1.3966 0.15895 -4.286E-05 NaN 17.113 20 10 2 NaN NaN NaN NaN 0 NaN NaN 0 692310 18962 1051 12399 12403 0.07923362556925895 HELQRGEPT 9 Unmodified _HELQRGEPT_ 0 0 0 ENST00000264552.13_1_19:55918184-55919114:-|nuORF;ENST00000589978.1_1_19:55915759-55919114:-|nuORF ENST00000264552.13_1_19:55918184-55919114:-|nuORF ENST00000264552.13_1_19:55918184-55919114:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.0747985839844 3 356.180717 1065.52032 -0.093973 -3.3471E-05 0.058125 2.0703E-05 -0.035848 -1.2768E-05 356.18068925879174 22.8 1.3236 21.346 20.528 21.852 -1.4535 117 37 4 0 0 0 0.8319 1 3554 3554 8.1555 4.5685 1 5154200 18963 8340 12400 12404 18931 18931 -0.009818037103059396 HELQRGEPT 9 Unmodified _HELQRGEPT_ 0 0 0 ENST00000264552.13_1_19:55918184-55919114:-|nuORF;ENST00000589978.1_1_19:55915759-55919114:-|nuORF ENST00000264552.13_1_19:55918184-55919114:-|nuORF ENST00000264552.13_1_19:55918184-55919114:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 356.180717 1065.52032 -0.27349 -9.7413E-05 0.13312 4.7415E-05 -0.14037 -4.9998E-05 356.1807752481012 21.314 1.2413 21.314 20.597 21.838 0 -0.013477 0.00031062 NaN 8.1555 113 35 5 NaN NaN NaN NaN 0 NaN NaN 0 4260900 18964 8340 12400 12404 -0.009818037103059396 HELQRGEPT 9 Unmodified _HELQRGEPT_ 0 0 0 ENST00000264552.13_1_19:55918184-55919114:-|nuORF;ENST00000589978.1_1_19:55915759-55919114:-|nuORF ENST00000264552.13_1_19:55918184-55919114:-|nuORF ENST00000264552.13_1_19:55918184-55919114:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 356.180717 1065.52032 0.4371 0.00015569 -0.59744 -0.0002128 -0.16033 -5.7107E-05 356.1805086722485 22.876 1.3562 21.323 20.478 21.834 -1.5532 -0.0050151 -0.00047001 NaN 8.1555 118 38 4 NaN NaN NaN NaN 0 NaN NaN 0 3814100 18965 8340 12400 12404 -0.009818037103059396 HELRIARL 8 Unmodified _HELRIARL_ 0 0 0 ENSG00000125901|ENST00000380325|MRPS26 ENSG00000125901|ENST00000380325|MRPS26 ENSG00000125901|ENST00000380325|MRPS26 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.2164306640625 3 336.541809 1006.6036 -0.48812 -0.00016427 0.97126 0.00032687 0.48314 0.0001626 336.5418841761108 54.973 0.9507 54.973 54.419 55.369 0 57 26 3 0 0 0 0.88497 1 10550 10550 10.074 3.8681 1 2389500 18966 3403 12401 12405 18932 18932 0.10055977528224957 HELRIARL 8 Unmodified _HELRIARL_ 0 0 0 ENSG00000125901|ENST00000380325|MRPS26 ENSG00000125901|ENST00000380325|MRPS26 ENSG00000125901|ENST00000380325|MRPS26 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.2217712402344 3 336.541809 1006.6036 0.077539 2.6095E-05 0.047787 1.6082E-05 0.12533 4.2177E-05 336.54171582480313 57.585 0.82417 54.333 53.899 54.724 -3.2517 54 22 3 0 0 0 8448 1 10734 10734 12.856 2.782 1 1511700 18967 3403 12401 12405 18933 18933 0.10055977528224957 HELRIARL 8 Unmodified _HELRIARL_ 0 0 0 ENSG00000125901|ENST00000380325|MRPS26 ENSG00000125901|ENST00000380325|MRPS26 ENSG00000125901|ENST00000380325|MRPS26 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.2218933105469 3 336.541809 1006.6036 -0.62383 -0.00020995 1.0313 0.00034706 0.40743 0.00013712 336.54199965594336 57.599 1.0175 54.393 53.973 54.99 -3.2052 65 28 3 0 0 0 8448 1 10739 10739 21.799 1.3458 1 1583600 18968 3403 12401 12405 18934 18934 0.10055977528224957 HELRIARL 8 Unmodified _HELRIARL_ 0 0 0 ENSG00000125901|ENST00000380325|MRPS26 ENSG00000125901|ENST00000380325|MRPS26 ENSG00000125901|ENST00000380325|MRPS26 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 336.541809 1006.6036 -0.39972 -0.00013452 0.3089 0.00010396 -0.090817 -3.0564E-05 336.54188367227806 57.222 0.81176 54.328 53.957 54.769 -2.8944 -0.0025623 0.00014421 NaN 12.856 42 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2338000 18969 3403 12401 12405 0.10055977528224957 HELSVEQQLY 10 Unmodified _HELSVEQQLY_ 0 0 0 nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6 nc|ENSG00000106290|P49848-4|TAF6 nc|ENSG00000106290|P49848-4|TAF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7578125 2 623.309135 1244.60372 0.24061 0.00014997 0.13138 8.1891E-05 0.37199 0.00023187 623.30920573585 90.447 0.57216 90.447 90.185 90.758 0 35 15 3 0 0 0 0.17837 1 17659 17659 75.761 49.493 1 3758800 18970 2372 12402 12406 18935 18935 -0.00880112053096127 HELSVEQQLY 10 Unmodified _HELSVEQQLY_ 0 0 0 nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6 nc|ENSG00000106290|P49848-4|TAF6 nc|ENSG00000106290|P49848-4|TAF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7794799804688 2 623.309135 1244.60372 0.99056 0.00061743 -0.48331 -0.00030125 0.50725 0.00031617 623.3087145920674 94.594 0.62656 90.603 90.246 90.873 -3.9907 38 17 3 0 0 0 0.12624 1 18500 18500 92.653 65.025 1 6119600 18971 2372 12402 12406 18936 18936 -0.00880112053096127 HELSVEQQLY 10 Unmodified _HELSVEQQLY_ 0 0 0 nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6 nc|ENSG00000106290|P49848-4|TAF6 nc|ENSG00000106290|P49848-4|TAF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7705688476562 2 623.309135 1244.60372 0.41243 0.00025707 0.24872 0.00015503 0.66115 0.0004121 623.3092314743121 94.682 0.56055 90.491 90.195 90.755 -4.1912 36 15 3 0 0 0 0.23651 1 18039 18039 78.728 64.822 1 5812600 18972 2372 12402 12406 18937 18937 -0.00880112053096127 HELSVEQQLY 10 Unmodified _HELSVEQQLY_ 0 0 0 nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6 nc|ENSG00000106290|P49848-4|TAF6 nc|ENSG00000106290|P49848-4|TAF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7811279296875 2 623.309135 1244.60372 0.23068 0.00014379 0.018281 1.1395E-05 0.24897 0.00015518 623.3091773262267 94.454 0.58428 90.61 90.263 90.847 -3.844 31 16 2 0 0 0 0.017853 1 18131 18131 114.65 80.247 1 5983100 18973 2372 12402 12406 18938 18938 -0.00880112053096127 HELVIYST 8 Unmodified _HELVIYST_ 0 0 0 nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;ENSG00000133131|ENST00000355610|MORC4;ENST00000478924.1_1_X:106185151-106185807:-|nuORF nc|ENSG00000133131|Q8TE76-2|MORC4 nc|ENSG00000133131|Q8TE76-2|MORC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25299072265625 2 481.2531 960.491647 0.061341 2.9521E-05 0.094592 4.5523E-05 0.15593 7.5044E-05 481.25304133174143 78.843 0.63702 75.333 74.918 75.555 -3.5102 36 17 3 0 0 0 0.060254 3 15409 15359;15409;15428 85.357 51.254 1 4449900 18974 3787 12403 12407 18939;18940;18941 18940 0.00982078660570096 HELVIYST 8 Unmodified _HELVIYST_ 0 0 0 nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;ENSG00000133131|ENST00000355610|MORC4;ENST00000478924.1_1_X:106185151-106185807:-|nuORF nc|ENSG00000133131|Q8TE76-2|MORC4 nc|ENSG00000133131|Q8TE76-2|MORC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2531433105469 2 481.2531 960.491647 -0.018921 -9.1057E-06 0.43804 0.00021081 0.41912 0.0002017 481.25318170952465 79.199 0.66158 75.394 74.984 75.646 -3.8048 41 18 3 0 0 0 0.047597 3 15014 14964;15014;15058 104.8 66.648 1 3404600 18975 3787 12403 12407 18942;18943;18944 18943 0.00982078660570096 HELVIYST 8 Unmodified _HELVIYST_ 0 0 0 nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;ENSG00000133131|ENST00000355610|MORC4;ENST00000478924.1_1_X:106185151-106185807:-|nuORF nc|ENSG00000133131|Q8TE76-2|MORC4 nc|ENSG00000133131|Q8TE76-2|MORC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2532958984375 2 481.2531 960.491647 -0.11894 -5.7239E-05 0.51892 0.00024973 0.39999 0.00019249 481.2532945276658 79.073 0.52401 75.397 75.096 75.62 -3.676 28 14 3 0 0 0 0.037002 2 15050 15050;15074 92.822 56.695 1 3606300 18976 3787 12403 12407 18945;18946 18945 0.00982078660570096 HELWRRRRTRR 11 Unmodified _HELWRRRRTRR_ 0 0 0 REV__ENST00000507701.1_1_4:76587113-76598433:-|nuORF REV__ENST00000507701.1_1_4:76587113-76598433:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3641967773438 2 811.472172 1620.92979 NaN NaN NaN NaN NaN NaN NaN 178.04 1 173.25 172.75 173.75 -4.7898 0 0 0 0.23698 1 36422 36422 0.96228 0.65524 1 + 18977 22505 12404 12408 18947 18947 0.14416351753789058 HELWRRRRTRR 11 Unmodified _HELWRRRRTRR_ 0 0 0 REV__ENST00000507701.1_1_4:76587113-76598433:-|nuORF REV__ENST00000507701.1_1_4:76587113-76598433:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3663330078125 2 811.472172 1620.92979 NaN NaN NaN NaN NaN NaN NaN 178.3 1 173.51 173.01 174.01 -4.7898 0 0 0 0.22632 1 36480 36480 0 0 1 + 18978 22505 12404 12408 18948 18948 0.14416351753789058 HELYDLEE 8 Unmodified _HELYDLEE_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000196873|ENST00000360171|ZNG1C;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000460896.1_9:42685444-42714533:+|nuORF;ENST00000487575.6_1_9:121469-150531:-|nuORF;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000479583.5_1_2:114228547-114253317:+|nuORF;ENST00000486387.2_9:42689759-42714533:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000456188.5_1_2:114214762-114253317:+|nuORF;ENST00000382436.3_9:42674366-42714533:+|nuORF;nc|ENSG00000215126|Q5RIA9-2|ZNG1E;ENST00000496513.1_9:42713885-42714077:+|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6896362304688 2 524.235104 1046.45566 0.24478 0.00012832 4.458 0.002337 4.7028 0.0024654 524.7384377526453 61.61 0.17197 58.371 58.276 58.448 -3.2395 9 4 3 0 0 0 0.97173 1 11529 11529 7.9102 0.62092 1 803060 18979 4027 12405 12409 18949 18949 -0.0657142330694569 HEMEIQGL 8 Unmodified _HEMEIQGL_ 0 0 0 ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant;PDE4DIP|p.V841Lfs*4|1|0.41|ENSG00000178104|chr1:148978357-148978357|A/-|frameshift_variant;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72900390625 2 478.728935 955.443317 -0.18144 -8.6862E-05 0.3121 0.00014941 0.13066 6.255E-05 478.72914448300094 88.7 0.56966 88.7 88.394 88.964 0 24 15 2 0 0 0 0.12867 1 17318 17318 57.471 32.797 1 1808800 18980 6556 12406 12410 18950 18950 -0.03618738250975184 HEMEIQGL 8 Unmodified _HEMEIQGL_ 0 0 0 ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant;PDE4DIP|p.V841Lfs*4|1|0.41|ENSG00000178104|chr1:148978357-148978357|A/-|frameshift_variant;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72906494140625 2 478.728935 955.443317 -0.012157 -5.8199E-06 0.20387 9.76E-05 0.19172 9.178E-05 478.72913493576345 92.426 0.52702 88.501 88.161 88.688 -3.9251 26 14 2 0 0 0 0.078324 1 18096 18096 67.344 35.227 1 2018500 18981 6556 12406 12410 18951 18951 -0.03618738250975184 HEMEIQGL 8 Unmodified _HEMEIQGL_ 0 0 0 ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant;PDE4DIP|p.V841Lfs*4|1|0.41|ENSG00000178104|chr1:148978357-148978357|A/-|frameshift_variant;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72894287109375 2 478.728935 955.443317 0.26111 0.000125 0.34109 0.00016329 0.60219 0.00028829 478.7291252485463 92.534 0.6257 88.439 88.155 88.78 -4.0946 28 17 2 0 0 0 0.078324 2 17640 17639;17640 67.344 31.3 1 1633800 18982 6556 12406 12410 18952;18953 18953 -0.03618738250975184 HEMEIQGL 8 Unmodified _HEMEIQGL_ 0 0 0 ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant;PDE4DIP|p.V841Lfs*4|1|0.41|ENSG00000178104|chr1:148978357-148978357|A/-|frameshift_variant;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7287902832031 2 478.728935 955.443317 0.095002 4.548E-05 0.22456 0.0001075 0.31956 0.00015298 478.7290868909777 92.347 0.57824 88.539 88.174 88.752 -3.8083 24 16 2 0 0 0 0.12867 1 17689 17689 57.471 28.985 1 1440100 18983 6556 12406 12410 18954 18954 -0.03618738250975184 HEMVVYEA 8 Unmodified _HEMVVYEA_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2650146484375 2 489.223485 976.432418 0.1728 8.4536E-05 -0.65602 -0.00032094 -0.48322 -0.0002364 489.2233075200777 63.536 2.3423 60.538 59.915 62.258 -2.9975 241 67 8 0 0 0 0.2118 2 12377 12377;12433 44.407 28.56 1 401010000 18984 6743 12407 12411 18955;18956 18955 -0.0567414062526268 HEMVVYEA 8 Unmodified _HEMVVYEA_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2542724609375 2 489.223485 976.432418 0.017171 8.4005E-06 -0.57977 -0.00028364 -0.5626 -0.00027524 489.22336029720105 63.761 2.236 60.504 60.055 62.291 -3.2567 157 64 4 0 0 0 0.07308 1 12036 12036 70.716 47.567 1 287790000 18985 6743 12407 12411 18957 18957 -0.0567414062526268 HEMVVYEA 8 Unmodified _HEMVVYEA_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.223485 976.432418 -0.11875 -5.8096E-05 -0.30269 -0.00014808 -0.42144 -0.00020618 489.22341049431407 60.609 1.834 60.609 60.138 61.972 0 0.068508 0.00025002 NaN 70.716 132 52 4 NaN NaN NaN NaN 0 NaN NaN 0 243710000 18986 6743 12407 12411 -0.0567414062526268 HEMVVYEA 8 Unmodified _HEMVVYEA_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.223485 976.432418 0.30323 0.00014835 -0.68007 -0.00033271 -0.37683 -0.00018436 489.2232639803605 63.926 2.2412 60.51 60.079 62.32 -3.4158 -0.030276 -0.00011923 NaN 70.716 218 63 7 NaN NaN NaN NaN 0 NaN NaN 0 315250000 18987 6743 12407 12411 -0.0567414062526268 HENCRVFRDRL 11 Unmodified _HENCRVFRDRL_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.781982421875 3 482.245726 1443.71535 NaN NaN NaN NaN NaN NaN NaN 133.52 1 128.7 128.2 129.2 -4.8175 0 0 0 0.22632 1 25700 25700 0.58532 0.54153 1 18988 2813 12408 12412 18958 18958 0.011240438230515792 HENESVYKA 9 Unmodified _HENESVYKA_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62746826-62750158:-|nuORF ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2606201171875 2 538.753995 1075.49344 0.17449 9.4008E-05 -0.32007 -0.00017244 -0.14558 -7.8431E-05 538.7542386303297 17.327 1.8603 17.327 17.1 18.961 0 148 52 6 0 0 0 0.38188 1 2742 2742 26.884 12.978 1 608970000 18989 6791 12409 12413 18959 18959 -0.041289123214710344 HENESVYKA 9 Unmodified _HENESVYKA_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62746826-62750158:-|nuORF ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2611083984375 2 538.753995 1075.49344 0.14646 7.8904E-05 -0.26932 -0.0001451 -0.12286 -6.6194E-05 538.7541804632008 18.611 1.0792 17.301 17.073 18.152 -1.3109 109 30 6 0 0 0 0.48644 1 3026 3026 20.454 6.5476 1 318750000 18990 6791 12409 12413 18960 18960 -0.041289123214710344 HENESVYKA 9 Unmodified _HENESVYKA_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62746826-62750158:-|nuORF ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.260498046875 2 538.753995 1075.49344 -0.21075 -0.00011354 0.037917 2.0428E-05 -0.17283 -9.3114E-05 538.7541740323338 18.531 1.4384 17.205 17.013 18.451 -1.3251 122 40 6 0 0 0 0.62102 1 2788 2788 11.64 0.81637 1 272510000 18991 6791 12409 12413 18961 18961 -0.041289123214710344 HENESVYKA 9 Unmodified _HENESVYKA_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62746826-62750158:-|nuORF ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2596435546875 2 538.753995 1075.49344 -1.0404 -0.00056054 0.8124 0.00043768 -0.22804 -0.00012286 538.7546388530342 18.73 1.6353 17.094 16.9 18.535 -1.6351 137 46 6 0 0 0 0.62102 1 2793 2793 11.64 0.81637 1 203720000 18992 6791 12409 12413 18962 18962 -0.041289123214710344 HENESVYKA 9 Unmodified _HENESVYKA_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62746826-62750158:-|nuORF ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 538.753995 1075.49344 -0.21075 -0.00011354 0.037917 2.0428E-05 -0.17283 -9.3114E-05 538.7541740323338 18.531 1.4384 17.205 17.013 18.451 -1.3251 -0.026573 -0.00012075 NaN 26.884 122 40 6 NaN NaN NaN NaN 0 NaN NaN 0 272510000 18993 6791 12409 12413 -0.041289123214710344 HENILAPSDV 10 Unmodified _HENILAPSDV_ 0 0 0 ENST00000394155.6_1_X:135292840-135293086:+|nuORF ENST00000394155.6_1_X:135292840-135293086:+|nuORF ENST00000394155.6_1_X:135292840-135293086:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.774169921875 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 50.893 1 50.893 50.393 51.393 0 0 0 0 0.22552 1 9644 9644 18.146 2.2992 1 18994 9405 12410 12414 18963 18963 -0.0026405277033063612 HENIVRYY 8 Unmodified _HENIVRYY_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;EIF2AK4|p.L856Wfs*7|1|0.47|ENSG00000128829|chr15:39990307-39990307|T/-|frameshift_variant;EIF2AK4|p.P1003Hfs*17|1|0.32|ENSG00000128829|chr15:40001069-40001069|C/-|frameshift_variant nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7724609375 2 547.274898 1092.53524 0.43132 0.00023605 -2.021 -0.001106 -1.5897 -0.00086998 547.2747741564294 51.74 0.63625 51.74 51.474 52.11 0 21 17 2 0 0 0 0.10766 1 9825 9825 61.602 27.499 1 3127400 18995 3543 12411 12415 18964 18964 -0.007323118423073538 HENIVRYY 8 Unmodified _HENIVRYY_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;EIF2AK4|p.L856Wfs*7|1|0.47|ENSG00000128829|chr15:39990307-39990307|T/-|frameshift_variant;EIF2AK4|p.P1003Hfs*17|1|0.32|ENSG00000128829|chr15:40001069-40001069|C/-|frameshift_variant nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7734985351562 2 547.274898 1092.53524 0.050093 2.7415E-05 -1.2735 -0.00069696 -1.2234 -0.00066955 547.2747382383101 55.054 0.69737 51.916 51.519 52.216 -3.1377 39 19 3 0 0 0 0.039813 3 10208 10159;10208;10265 89.401 47.306 1 5988100 18996 3543 12411 12415 18965;18966;18967 18966 -0.007323118423073538 HENIVRYY 8 Unmodified _HENIVRYY_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;EIF2AK4|p.L856Wfs*7|1|0.47|ENSG00000128829|chr15:39990307-39990307|T/-|frameshift_variant;EIF2AK4|p.P1003Hfs*17|1|0.32|ENSG00000128829|chr15:40001069-40001069|C/-|frameshift_variant nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.274898 1092.53524 0.086445 4.7309E-05 -1.5412 -0.00084346 -1.4548 -0.00079615 547.2749549599371 54.943 0.563 51.808 51.57 52.133 -3.1352 -0.01363 -3.9463E-05 NaN 89.401 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4552700 18997 3543 12411 12415 -0.007323118423073538 HENLACRLW 9 Unmodified _HENLACRLW_ 0 0 0 REV__SNX29|p.L418Sfs*35|1|0.32|ENSG00000048471|chr16:12069060-12069060|C/-|frameshift_variant REV__SNX29|p.L418Sfs*35|1|0.32|ENSG00000048471|chr16:12069060-12069060|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2100830078125 3 381.190559 1140.54985 NaN NaN NaN NaN NaN NaN NaN 59.855 1 56.921 56.421 57.421 -2.9333 0 0 0 0.19654 1 11512 11512 0.073264 0 1 + 18998 24665 12412 12416 18968 18968 -0.014805629657985264 HENLLINEL 9 Unmodified _HENLLINEL_ 0 0 0 nc|ENSG00000133393|Q96NB1-2|CEP20;ENSG00000133393|ENST00000255759|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.78271484375 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 137.8 1 137.8 137.3 138.3 0 0 0 0 0.03591 1 27342 27342 59.368 9.8141 1 18999 3799 12413 12417 18969 18969 0.03372824126381602 HENLLINEL 9 Unmodified _HENLLINEL_ 0 0 0 nc|ENSG00000133393|Q96NB1-2|CEP20;ENSG00000133393|ENST00000255759|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7830200195312 2 547.795663 1093.57677 0.24163 0.00013236 0.041918 2.2963E-05 0.28354 0.00015532 547.7954019643138 142.13 0.69928 137.48 137.06 137.76 -4.6522 29 19 2 0 0 0 0.067911 2 28077 28024;28077 81.552 75.065 1 3382800 19000 3799 12413 12417 18970;18971 18971 0.03372824126381602 HENLLINEL 9 Unmodified _HENLLINEL_ 0 0 0 nc|ENSG00000133393|Q96NB1-2|CEP20;ENSG00000133393|ENST00000255759|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.766357421875 2 547.795663 1093.57677 0.11772 6.4489E-05 0.62365 0.00034163 0.74138 0.00040612 547.795732724118 142.42 0.68524 137.39 137.17 137.86 -5.0261 43 19 4 0 0 0 0.35429 1 27520 27520 28.495 2.4738 1 3350300 19001 3799 12413 12417 18972 18972 0.03372824126381602 HENLLINEL 9 Unmodified _HENLLINEL_ 0 0 0 nc|ENSG00000133393|Q96NB1-2|CEP20;ENSG00000133393|ENST00000255759|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.784912109375 2 547.795663 1093.57677 0.3574 0.00019578 0.19386 0.0001062 0.55126 0.00030198 547.7954599037787 142.38 0.91884 137.48 136.96 137.88 -4.8982 43 25 3 0 0 0 0.35429 1 27531 27531 28.495 2.4738 1 3278100 19002 3799 12413 12417 18973 18973 0.03372824126381602 HENRVSTL 8 Unmodified _HENRVSTL_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5 nc|ENSG00000069966|O14775-3|GNB5 nc|ENSG00000069966|O14775-3|GNB5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74078369140625 2 478.251423 954.488293 0.62618 0.00029947 -0.70785 -0.00033853 -0.081671 -3.9059E-05 478.25120522993865 22.324 0.37649 20.849 20.66 21.037 -1.4742 23 10 3 0 0 0 0.15482 1 3800 3800 52.268 12.311 1 793890 19003 1421 12414 12418 18974 18974 0.009228286065763314 HENRVSTL 8 Unmodified _HENRVSTL_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5 nc|ENSG00000069966|O14775-3|GNB5 nc|ENSG00000069966|O14775-3|GNB5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.251423 954.488293 -0.54906 -0.00026259 0.5725 0.0002738 0.023443 1.1212E-05 478.25183395601334 22.522 0.34452 20.733 20.54 20.885 -1.7886 -0.060136 0.00046309 NaN 52.268 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 685130 19004 1421 12414 12418 0.009228286065763314 HEPHRRQYHLL 11 Unmodified _HEPHRRQYHLL_ 0 0 0 REV__nc|ENSG00000148143|Q96JM2-2|ZNF462 REV__nc|ENSG00000148143|Q96JM2-2|ZNF462 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 372.1175231933594 4 372.201005 1484.77491 -0.38638 -0.00014381 0.021457 7.9864E-06 -0.36492 -0.00013582 372.45113623669874 56.934 0.17187 56.934 56.814 56.986 0 5 4 2 0 0 0 0.96224 1 10877 10877 0 0 1 450770 + 19005 16962 12415 12419 18975 18975 0.05191682828763078 HEPTPDPH 8 Unmodified _HEPTPDPH_ 0 0 0 REV__ENSG00000144031|ENST00000360589|ANKRD53 REV__ENSG00000144031|ENST00000360589|ANKRD53 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2415466308594 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 63.68 1 60.423 59.923 60.923 -3.2567 0 0 0 0.23025 1 11950 11950 0.12286 0 1 + 19006 16765 12416 12420 18976 18976 -0.06317122210202797 HEQAWLLQQQL 11 Unmodified _HEQAWLLQQQL_ 0 0 0 DCST2|p.P675H|1|0.35|ENSG00000163354|chr1:155023198-155023198|G/T|missense_variant DCST2|p.P675H|1|0.35|ENSG00000163354|chr1:155023198-155023198|G/T|missense_variant DCST2|p.P675H|1|0.35|ENSG00000163354|chr1:155023198-155023198|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2478942871094 3 465.245609 1392.715 NaN NaN NaN NaN NaN NaN NaN 101.64 1 97.623 97.123 98.123 -4.0212 0 0 0 0.22632 1 19531 19531 0.172 0.14059 1 19007 794 12417 12421 18977 18977 0.034349473748534365 HEQKVQPTV 9 Unmodified _HEQKVQPTV_ 0 0 0 REV__LEF1|p.R296Dfs*8|1|0.29|ENSG00000138795|chr4:108078342-108078342|T/-|frameshift_variant REV__LEF1|p.R296Dfs*8|1|0.29|ENSG00000138795|chr4:108078342-108078342|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2854614257812 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 74.3 1 70.624 70.124 71.124 -3.6764 0 0 0 0.22962 1 14047 14047 14.838 3.198 1 + 19008 16493 12418 12422 18978 18978 0.031759573291765264 HEQLNRPKV 9 Unmodified _HEQLNRPKV_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;DNAH17|p.G2596Afs*13|1|0.33|ENSG00000187775|chr17:78479600-78479600|G/-|frameshift_variant;DNAH17|p.R1580Gfs*23|1|0.38|ENSG00000187775|chr17:78506785-78506785|G/-|frameshift_variant;DNAH17|p.K2058Qfs*32|1|0.09|ENSG00000187775|chr17:78494691-78494692|-/G|frameshift_variant;DNAH17|p.D2341Tfs*111|1|0.32|ENSG00000187775|chr17:78486305-78486305|G/-|frameshift_variant ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2225646972656 3 374.21224 1119.61489 0.67202 0.00025148 -1.1428 -0.00042765 -0.4708 -0.00017618 374.21172293680553 23.998 0.42068 22.445 22.217 22.638 -1.5532 26 11 4 0 0 0 0.73814 1 4174 4174 4.5289 0.33936 1 940700 19009 7127 12419 12423 18979 18979 0.05986754831701546 HEQLRAVIV 9 Unmodified _HEQLRAVIV_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2861938476562 2 532.81419 1063.61383 -0.061944 -3.3005E-05 0.80713 0.00043005 0.74519 0.00039705 533.3165512115951 70.996 0.8617 70.996 70.521 71.382 0 32 24 2 0 0 0 0.094316 5 13757 13709;13721;13723;13757;13777 57.722 36.185 1 2678100 19010 899 12420 12424 18980;18981;18982;18983;18984 18983 0.08456540462793782 HEQLRAVIV 9 Unmodified _HEQLRAVIV_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2726440429688 2 532.81419 1063.61383 -0.022243 -1.1851E-05 0.88696 0.00047258 0.86471 0.00046073 533.3164906526795 73.797 1.1197 70.433 69.972 71.092 -3.3643 47 31 2 0 0 0 0.25976 1 14361 14361 19.626 11.47 1 4346600 19011 899 12420 12424 18985 18985 0.08456540462793782 HEQLRAVIV 9 Unmodified _HEQLRAVIV_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2869873046875 2 532.81419 1063.61383 0.41879 0.00022314 0.39002 0.00020781 0.80881 0.00043094 532.8140030202769 74.113 1.2915 70.519 70.116 71.407 -3.594 50 36 2 0 0 0 0.045725 4 14099 14046;14059;14090;14099 72.968 55.855 1 3557500 19012 899 12420 12424 18986;18987;18988;18989 18989 0.08456540462793782 HEQLVVAEIT 10 Unmodified _HEQLVVAEIT_ 0 0 0 ENST00000437364.2_1_1:47358067-47358181:+|nuORF ENST00000437364.2_1_1:47358067-47358181:+|nuORF ENST00000437364.2_1_1:47358067-47358181:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 380.1702575683594 3 380.208273 1137.60299 NaN NaN NaN NaN NaN NaN NaN 101.8 1 97.617 97.117 98.117 -4.1861 0 0 0 0.22588 1 20004 20004 6.1918 0 1 19013 9851 12421 12425 18990 18990 0.03969093297860127 HEQLWAKL 8 Unmodified _HEQLWAKL_ 0 0 0 REV__ENSG00000113430|ENST00000231357|IRX4 REV__ENSG00000113430|ENST00000231357|IRX4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.8570861816406 3 342.190665 1023.55016 NaN NaN NaN NaN NaN NaN NaN 71.813 1 68.503 68.003 69.003 -3.3107 0 0 0 0.21486 1 13989 13989 6.7232 0 1 + 19014 15342 12422 12426 18991 18991 0.03933180025705951 HEQSVNRS 8 Unmodified _HEQSVNRS_ 0 0 0 FLG|p.T2193Hfs*226|1|0.45|ENSG00000143631|chr1:152308309-152308309|T/-|frameshift_variant;FLG|p.H2858Sfs*3|1|0.04|ENSG00000143631|chr1:152306315-152306316|-/C|frameshift_variant;ENSG00000143631|ENST00000368799|FLG;CON__P20930 FLG|p.T2193Hfs*226|1|0.45|ENSG00000143631|chr1:152308309-152308309|T/-|frameshift_variant FLG|p.T2193Hfs*226|1|0.45|ENSG00000143631|chr1:152308309-152308309|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7315979003906 2 478.730855 955.447156 0.091386 4.3749E-05 0.73755 0.00035309 0.82894 0.00039684 478.73108725127145 25.604 0.65318 23.97 23.685 24.338 -1.6347 45 18 3 0 0 0 0.72935 1 4284 4284 10.074 0 1 5123400 + 19015 668 12423 12427 18992 18992 -0.03234932432894766 HEREMAEQF 9 Unmodified _HEREMAEQF_ 0 0 0 nc|ENSG00000185104|Q9UNN5-2|FAF1;ENSG00000185104|ENST00000396153|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2625122070312 2 588.758755 1175.50296 0.44087 0.00025957 -0.76991 -0.00045329 -0.32903 -0.00019372 588.75860759232 38.292 0.63802 38.292 37.965 38.603 0 44 17 4 0 0 0 0.6329 1 7097 7097 10.824 2.0785 1 6419800 19016 6961 12424 12428 18993 18993 -0.0777746730761919 HEREMAEQF 9 Unmodified _HEREMAEQF_ 0 0 0 nc|ENSG00000185104|Q9UNN5-2|FAF1;ENSG00000185104|ENST00000396153|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 588.758755 1175.50296 0.19785 0.00011649 -0.47417 -0.00027917 -0.27632 -0.00016268 588.7587868764804 40.883 0.70386 38.248 38.007 38.71 -2.6348 0.012718 5.7745E-06 NaN 10.824 48 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6390200 19017 6961 12424 12428 -0.0777746730761919 HEREMAEQF 9 Unmodified _HEREMAEQF_ 0 0 0 nc|ENSG00000185104|Q9UNN5-2|FAF1;ENSG00000185104|ENST00000396153|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 588.758755 1175.50296 0.36311 0.00021378 -0.69596 -0.00040975 -0.33285 -0.00019597 588.7587585265026 40.783 0.83455 38.243 37.963 38.798 -2.5398 0.0077076 -0.00025538 NaN 10.824 52 23 3 NaN NaN NaN NaN 0 NaN NaN 0 6439700 19018 6961 12424 12428 -0.0777746730761919 HEREMAEQF 9 Unmodified _HEREMAEQF_ 0 0 0 nc|ENSG00000185104|Q9UNN5-2|FAF1;ENSG00000185104|ENST00000396153|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 588.758755 1175.50296 0.090652 5.3372E-05 -0.0061913 -3.6452E-06 0.084461 4.9727E-05 588.7589467249785 40.649 0.80785 38.159 37.936 38.743 -2.4896 -0.076523 0.00055683 NaN 10.824 44 22 3 NaN NaN NaN NaN 0 NaN NaN 0 4923600 19019 6961 12424 12428 -0.0777746730761919 HERERFYIYRK 11 Unmodified _HERERFYIYRK_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2864379882812 3 532.951308 1595.83209 0.095249 5.0763E-05 1.3603 0.00072499 1.4556 0.00077575 533.2876840394719 137.92 0.13828 137.92 137.83 137.97 0 5 3 2 0 0 0 0.96225 1 27378 27378 0.45452 0.35968 1 2488400 19020 4201 12425 12429 18994 18994 0.05801105314458255 HERIVKQY 8 Unmodified _HERIVKQY_ 0 0 0 CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000585896.5_1_19:14020678-14030767:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.8699951171875 3 358.201452 1071.58253 -0.33062 -0.00011843 0.22229 7.9625E-05 -0.10833 -3.8805E-05 358.2014765177259 16.781 0.34723 16.781 16.647 16.994 0 18 9 3 0 0 0 8448 1 2632 2632 12.856 6.6502 1 1231100 19021 403 12426 12430 18995 18995 0.04959967428703749 HERIVKQY 8 Unmodified _HERIVKQY_ 0 0 0 CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000585896.5_1_19:14020678-14030767:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 358.201452 1071.58253 -0.36508 -0.00013077 0.343 0.00012286 -0.022084 -7.9104E-06 358.2015254710548 18.16 0.27782 16.85 16.725 17.002 -1.3109 0.038023 2.4351E-05 NaN 12.856 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1741000 19022 403 12426 12430 0.04959967428703749 HERIVKQY 8 Unmodified _HERIVKQY_ 0 0 0 CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000585896.5_1_19:14020678-14030767:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 358.201452 1071.58253 -0.39734 -0.00014233 0.42048 0.00015062 0.023142 8.2895E-06 358.2015396234414 18.076 0.3345 16.804 16.662 16.996 -1.2722 -0.0072439 0.00010761 NaN 12.856 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 997130 19023 403 12426 12430 0.04959967428703749 HERKIEVM 8 Unmodified _HERKIEVM_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2;ARID2|p.P1269L|1|0.33|ENSG00000189079|chr12:45851929-45851929|C/T|missense_variant nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 347.8190002441406 3 347.855176 1040.5437 NaN NaN NaN NaN NaN NaN NaN 28.708 1 26.952 26.452 27.452 -1.7552 0 0 0 0.22674 1 4859 4859 14.838 4.7643 1 19024 219 12427 12431 18996 18996 0.02504918802674183 HERLLQQY 8 Unmodified _HERLLQQY_ 0 0 0 REV__HMGCLL1|p.K268Ifs*21|1|0.07|ENSG00000146151|chr6:55495501-55495502|-/TA|frameshift_variant REV__HMGCLL1|p.K268Ifs*21|1|0.07|ENSG00000146151|chr6:55495501-55495502|-/TA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.789306640625 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 151.77 1 147.01 146.51 147.51 -4.7523 0 0 0 0.22676 1 30159 30159 1.7423 0 1 + 19025 16872 12428 12432 18997 18997 0.022433770490579263 HERPVLPKC 9 Unmodified _HERPVLPKC_ 0 0 0 REV__ENSG00000068745|ENST00000328631|IP6K2 REV__ENSG00000068745|ENST00000328631|IP6K2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.1999206542969 3 360.199054 1077.57533 NaN NaN NaN NaN NaN NaN NaN 15.517 1 14.295 13.795 14.795 -1.2219 0 0 0 0.23508 1 2178 2178 2.7352 0 1 + 19026 14232 12429 12433 18998 18998 0.039649115566362525 HERQLRREERR 11 Unmodified _HERQLRREERR_ 0 0 0 REV__ENSG00000185352|ENST00000376705|HS6ST3 REV__ENSG00000185352|ENST00000376705|HS6ST3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2619018554688 3 522.289094 1563.84545 NaN NaN NaN NaN NaN NaN NaN 138.5 1 133.86 133.36 134.36 -4.6413 0 0 0 0.22632 1 27348 27348 0.50596 0.41111 1 + 19027 18962 12430 12434 18999 18999 0.08608356146396545 HERRVLGL 8 Unmodified _HERRVLGL_ 0 0 0 ENST00000526204.5_1_8:145650010-145650409:-|nuORF ENST00000526204.5_1_8:145650010-145650409:-|nuORF ENST00000526204.5_1_8:145650010-145650409:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2659912109375 2 490.293425 978.572297 0.030601 1.5004E-05 -3.2108 -0.0015743 -3.1802 -0.0015592 490.29388873607496 63.949 0.20744 60.693 60.57 60.777 -3.2567 7 5 2 0 0 0 0.89147 1 12015 12015 1.3295 0.404 1 467460 19028 10912 12431 12435 19000 19000 0.08215404494126233 HERTQSQA 8 Unmodified _HERTQSQA_ 0 0 0 nc|ENSG00000090975|Q9BZ72-3|PITPNM2;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2 nc|ENSG00000090975|Q9BZ72-3|PITPNM2 nc|ENSG00000090975|Q9BZ72-3|PITPNM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73187255859375 2 478.730855 955.447156 -0.028176 -1.3489E-05 0.8306 0.00039763 0.80242 0.00038415 478.73109773415285 24.32 0.48294 24.32 24.132 24.615 0 29 13 3 0 0 0 0.62642 1 4166 4166 20.454 0 1 5062100 19029 1797 12432 12436 19001 19001 -0.03234932432894766 HERTQSQA 8 Unmodified _HERTQSQA_ 0 0 0 nc|ENSG00000090975|Q9BZ72-3|PITPNM2;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2 nc|ENSG00000090975|Q9BZ72-3|PITPNM2 nc|ENSG00000090975|Q9BZ72-3|PITPNM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72174072265625 2 478.730855 955.447156 1.1985 0.00057377 -0.31199 -0.00014936 0.88653 0.00042441 478.7306261356392 25.747 0.5548 24.098 23.859 24.414 -1.6482 27 15 2 0 0 0 0.52597 3 4523 4502;4523;4556 26.884 20.454 1 3267300 19030 1797 12432 12436 19002;19003;19004 19003 -0.03234932432894766 HERTQSQA 8 Unmodified _HERTQSQA_ 0 0 0 nc|ENSG00000090975|Q9BZ72-3|PITPNM2;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2 nc|ENSG00000090975|Q9BZ72-3|PITPNM2 nc|ENSG00000090975|Q9BZ72-3|PITPNM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73101806640625 2 478.730855 955.447156 0.091386 4.3749E-05 0.73755 0.00035309 0.82894 0.00039684 478.73108725127145 25.604 0.65318 23.97 23.685 24.338 -1.6347 45 18 3 0 0 0 0.36038 3 4233 4190;4197;4233 34.102 10.954 1 5123400 19031 1797 12432 12436 19005;19006;19007 19007 -0.03234932432894766 HERTQSQA 8 Unmodified _HERTQSQA_ 0 0 0 nc|ENSG00000090975|Q9BZ72-3|PITPNM2;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2 nc|ENSG00000090975|Q9BZ72-3|PITPNM2 nc|ENSG00000090975|Q9BZ72-3|PITPNM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7314758300781 2 478.730855 955.447156 -0.06788 -3.2496E-05 1.3728 0.00065719 1.3049 0.0006247 478.7312415674275 25.816 0.48789 23.894 23.741 24.229 -1.9222 28 13 3 0 0 0 0.52597 2 4250 4250;4282 26.884 3.7352 1 1404700 19032 1797 12432 12436 19008;19009 19008 -0.03234932432894766 HERWRRLQFN 10 Unmodified _HERWRRLQFN_ 0 0 0 REV__nc|ENSG00000067167|Q15629-2|TRAM1 REV__nc|ENSG00000067167|Q15629-2|TRAM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2448425292969 3 481.256843 1440.7487 NaN NaN NaN NaN NaN NaN NaN 77.633 1 73.866 73.366 74.366 -3.7664 0 0 0 2.8426 1 14708 14708 0.043787 0 1 + 19033 14209 12433 12437 19010 19010 0.045954136572618154 HESDINAVA 9 Unmodified _HESDINAVA_ 0 0 0 nc|ENSG00000172354|P62879-2|GNB2;ENSG00000172354|ENST00000303210|GNB2 nc|ENSG00000172354|P62879-2|GNB2 nc|ENSG00000172354|P62879-2|GNB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72503662109375 2 478.227613 954.440674 -0.039277 -1.8783E-05 -3.4262 -0.0016385 -3.4654 -0.0016573 478.2274929316342 29.161 0.87132 29.161 28.738 29.61 0 33 24 2 0 0 0 0.52396 1 5195 5195 18.146 2.3781 1 2441100 19034 6212 12434 12438 19011 19011 -0.03836870384282065 HESDINAVA 9 Unmodified _HESDINAVA_ 0 0 0 nc|ENSG00000172354|P62879-2|GNB2;ENSG00000172354|ENST00000303210|GNB2 nc|ENSG00000172354|P62879-2|GNB2 nc|ENSG00000172354|P62879-2|GNB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7432861328125 2 478.227613 954.440674 0.37474 0.00017921 -0.38914 -0.0001861 -0.014403 -6.888E-06 478.22748282193317 31.064 0.70488 28.947 28.573 29.278 -2.1167 26 19 2 0 0 0 0.73268 1 5609 5609 24.021 3.5669 1 1649500 19035 6212 12434 12438 19012 19012 -0.03836870384282065 HESDINAVA 9 Unmodified _HESDINAVA_ 0 0 0 nc|ENSG00000172354|P62879-2|GNB2;ENSG00000172354|ENST00000303210|GNB2 nc|ENSG00000172354|P62879-2|GNB2 nc|ENSG00000172354|P62879-2|GNB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7283020019531 2 478.227613 954.440674 0.51831 0.00024787 -1.5696 -0.00075064 -1.0513 -0.00050277 478.22737894826884 31.068 0.59383 28.951 28.634 29.228 -2.1164 34 16 3 0 0 0 0.44932 1 5346 5346 22.736 5.794 1 1401200 19036 6212 12434 12438 19013 19013 -0.03836870384282065 HESEPFSF 8 Unmodified _HESEPFSF_ 0 0 0 ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545-3|CTBP2;nc|ENSG00000175029|P56545|CTBP2;ENSG00000175029|ENST00000309035|CTBP2 ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000175029|P56545|CTBP2;ENSG00000175029|ENST00000309035|CTBP2 ENSG00000159692|ENST00000382952|CTBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27667236328125 2 490.211432 978.408311 -0.041141 -2.0168E-05 -2.2867 -0.001121 -2.3278 -0.0011411 490.2101579148798 89.297 0.27827 85.52 85.313 85.592 -3.7779 10 7 2 0 0 0 0.97173 1 17104 17104 18.135 2.3668 1 604360 19037 5215;12474;6381 12435 12439 19014 19014 -0.08175657787273849 HESGHAIIAY 10 Unmodified _HESGHAIIAY_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 549.337646484375 2 549.272355 1096.53016 0.037662 2.0687E-05 -0.1188 -6.5254E-05 -0.081139 -4.4567E-05 549.2722149366261 54.305 2.1246 51.167 50.783 52.907 -3.1377 177 60 4 0 0 0 0.77872 1 10286 10286 20.454 6.9457 1 57695000 19038 4036 12436 12440 19015 19015 -0.014246157049228714 HESGHAIIAY 10 Unmodified _HESGHAIIAY_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 549.272355 1096.53016 -0.048193 -2.6471E-05 0.0068828 3.7805E-06 -0.041311 -2.2691E-05 549.2723113816975 54.302 2.614 51.418 50.908 53.522 -2.8837 0.13316 7.8822E-05 NaN 20.454 179 75 3 NaN NaN NaN NaN 0 NaN NaN 0 54841000 19039 4036 12436 12440 -0.014246157049228714 HESGHAIIAY 10 Unmodified _HESGHAIIAY_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 549.272355 1096.53016 0.086554 4.7542E-05 -0.11432 -6.2795E-05 -0.02777 -1.5253E-05 549.2722253123789 54.404 2.2014 51.269 50.801 53.003 -3.1352 -0.015534 -5.433E-05 NaN 20.454 179 62 4 NaN NaN NaN NaN 0 NaN NaN 0 69279000 19040 4036 12436 12440 -0.014246157049228714 HESGSGQSSGY 11 Unmodified _HESGSGQSSGY_ 0 0 0 CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR CON__Q86YZ3 CON__Q86YZ3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7924194335938 2 548.220517 1094.42648 NaN NaN NaN NaN NaN NaN NaN 24.279 1 24.279 23.779 24.779 0 0 0 0 0.20277 1 4176 4176 18.146 5.6148 1 + 19041 703 12437 12441 19016 19016 -0.1169556760321484 HESGSGQSSGY 11 Unmodified _HESGSGQSSGY_ 0 0 0 CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR CON__Q86YZ3 CON__Q86YZ3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.77587890625 2 548.220517 1094.42648 NaN NaN NaN NaN NaN NaN NaN 51.536 1 51.536 51.036 52.036 0 0 0 0 0.23264 1 9780 9780 6.2058 0.44535 1 + 19042 703 12437 12441 19017 19017 -0.1169556760321484 HESGSGQSSGY 11 Unmodified _HESGSGQSSGY_ 0 0 0 CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR CON__Q86YZ3 CON__Q86YZ3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.767822265625 2 548.220517 1094.42648 NaN NaN NaN NaN NaN NaN NaN 25.838 1 24.19 23.69 24.69 -1.6482 0 0 0 0.17694 1 4545 4545 24.021 11.489 1 + 19043 703 12437 12441 19018 19018 -0.1169556760321484 HESIPECN 8 Unmodified _HESIPECN_ 0 0 0 ENST00000332624.7_1_2:202285189-202285387:-|nuORF ENST00000332624.7_1_2:202285189-202285387:-|nuORF ENST00000332624.7_1_2:202285189-202285387:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1601867675781 3 310.132487 927.375631 NaN NaN NaN NaN NaN NaN NaN 25.656 1 24.007 23.507 24.507 -1.6482 0 0 0 0.21486 1 4504 4504 10.824 0 1 19044 8787 12438 12442 19019 19019 -0.09096188181786147 HESLAQYN 8 Unmodified _HESLAQYN_ 0 0 0 ENSG00000105647|ENST00000222254|PIK3R2;PIK3R3|p.H318Lfs*8|1|0.05|ENSG00000117461|chr1:46046614-46046615|-/TATCAATATAA|frameshift_variant;nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3 ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2456970214844 2 481.222331 960.430109 0.05729 2.7569E-05 0.6638 0.00031943 0.72109 0.000347 481.22234338642613 26.026 0.65771 26.026 25.669 26.327 0 24 18 2 0 0 0 0.70613 1 4512 4512 13.508 0.97634 1 2194800 19045 2326 12439 12443 19020 19020 -0.05168853038708221 HESLAQYN 8 Unmodified _HESLAQYN_ 0 0 0 ENSG00000105647|ENST00000222254|PIK3R2;PIK3R3|p.H318Lfs*8|1|0.05|ENSG00000117461|chr1:46046614-46046615|-/TATCAATATAA|frameshift_variant;nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3 ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2376708984375 2 481.222331 960.430109 0.90071 0.00043344 -0.49249 -0.000237 0.40823 0.00019645 481.2219756683771 27.906 0.38943 25.95 25.735 26.124 -1.9561 19 10 2 0 0 0 0.53444 2 4936 4936;4947 26.341 7.3012 1 1483600 19046 2326 12439 12443 19021;19022 19021 -0.05168853038708221 HESLLIQEGG 10 Unmodified _HESLLIQEGG_ 0 0 0 ENST00000512100.5_1_4:8211452-8220050:+|nuORF ENST00000512100.5_1_4:8211452-8220050:+|nuORF ENST00000512100.5_1_4:8211452-8220050:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7779541015625 2 541.77747 1081.54039 -0.031837 -1.7248E-05 0.32604 0.00017664 0.2942 0.00015939 541.7775997467062 23.051 0.66397 21.597 21.154 21.818 -1.4535 45 18 5 0 0 0 0.67319 1 3699 3699 13.906 1.3745 1 17393000 19047 10754 12440 12444 19023 19023 0.0028794722966267727 HESLWLRGP 9 Unmodified _HESLWLRGP_ 0 0 0 REV__ENST00000322310.9_1_9:140084508-140084799:+|nuORF REV__ENST00000322310.9_1_9:140084508-140084799:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.79296875 2 547.790715 1093.56688 NaN NaN NaN NaN NaN NaN NaN 24.518 1 24.518 24.018 25.018 0 0 0 0 0.23508 1 4226 4226 7.9102 2.1497 1 + 19048 20559 12441 12445 19024 19024 0.023836809116801305 HESTSCSDMFT 11 Unmodified _HESTSCSDMFT_ 0 0 0 REV__ENSG00000130827|ENST00000369682|PLXNA3 REV__ENSG00000130827|ENST00000369682|PLXNA3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7639770507812 2 622.731545 1243.44854 NaN NaN NaN NaN NaN NaN NaN 109.93 1 109.93 109.43 110.43 0 0 0 0 0.22632 1 21620 21620 0.00056442 0 1 + 19049 16035 12442 12446 19025 19025 -0.16344847241339266 HESVFTHL 8 Unmodified _HESVFTHL_ 0 0 0 REV__nc|ENSG00000172869|Q9Y485|DMXL1 REV__nc|ENSG00000172869|Q9Y485|DMXL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1654052734375 3 323.831137 968.47158 -0.78008 -0.00025262 0.41763 0.00013524 -0.36245 -0.00011737 323.8312722419095 62.69 0.56224 62.69 62.347 62.909 0 23 15 2 0 0 0 0.74818 1 12022 12022 7.2892 0 1 1305400 + 19050 13701 12443 12447 19026 19026 -0.013916722793851477 HESVFTHL 8 Unmodified _HESVFTHL_ 0 0 0 REV__nc|ENSG00000172869|Q9Y485|DMXL1 REV__nc|ENSG00000172869|Q9Y485|DMXL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1918640136719 3 323.831137 968.47158 -0.78008 -0.00025262 0.41763 0.00013524 -0.36245 -0.00011737 323.8312722419095 62.69 0.56224 62.69 62.347 62.909 0 23 15 2 0 0 0 1.0243 1 12043 12043 7.2892 0 1 1305400 + 19051 13701 12443 12447 19027 19027 -0.013916722793851477 HESVFTHL 8 Unmodified _HESVFTHL_ 0 0 0 REV__nc|ENSG00000172869|Q9Y485|DMXL1 REV__nc|ENSG00000172869|Q9Y485|DMXL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 323.831137 968.47158 -0.37889 -0.0001227 0.22098 7.1562E-05 -0.1579 -5.1134E-05 323.831211168683 65.679 0.58732 62.396 62.063 62.65 -3.2832 -0.10418 0.00015243 NaN 7.2892 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1768500 + 19052 13701 12443 12447 -0.013916722793851477 HETFGFSRP 9 Unmodified _HETFGFSRP_ 0 0 0 ZNF518A|p.R1309H|2|0.2|ENSG00000177853|chr10:96160248-96160248|G/A|missense_variant ZNF518A|p.R1309H|2|0.2|ENSG00000177853|chr10:96160248-96160248|G/A|missense_variant ZNF518A|p.R1309H|2|0.2|ENSG00000177853|chr10:96160248-96160248|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20147705078125 3 359.841924 1076.50394 NaN NaN NaN NaN NaN NaN NaN 46.702 1 43.836 43.336 44.336 -2.8666 0 0 0 0.23508 1 8507 8507 4.897 0.70751 1 19053 26625 12444 12448 19028 19028 -0.031248848763880233 HETGHVLG 8 Unmodified _HETGHVLG_ 0 0 0 ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14;ADAMTS3|p.S556Hfs*105|1|0.26|ENSG00000156140|chr4:72313757-72313757|C/-|frameshift_variant;ENSG00000156140|ENST00000286657|ADAMTS3;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2531433105469 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 106.39 1 106.39 105.89 106.89 0 0 0 0 0.21486 1 20916 20916 10.183 0 1 19054 64;62 12445 12449 19029 19029 -0.016205144849436692 HETGHVLG 8 Unmodified _HETGHVLG_ 0 0 0 ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14;ADAMTS3|p.S556Hfs*105|1|0.26|ENSG00000156140|chr4:72313757-72313757|C/-|frameshift_variant;ENSG00000156140|ENST00000286657|ADAMTS3;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25128173828125 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 140.5 1 135.85 135.35 136.35 -4.6493 0 0 0 0.23749 1 27738 27738 0.12286 0 1 19055 64;62 12445 12449 19030 19030 -0.016205144849436692 HETGHVLG 8 Unmodified _HETGHVLG_ 0 0 0 ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14;ADAMTS3|p.S556Hfs*105|1|0.26|ENSG00000156140|chr4:72313757-72313757|C/-|frameshift_variant;ENSG00000156140|ENST00000286657|ADAMTS3;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2447814941406 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 90.273 1 86.229 85.729 86.729 -4.0443 0 0 0 0.23749 1 17195 17195 0.0082765 0 1 19056 64;62 12445 12449 19031 19031 -0.016205144849436692 HETGHVLG 8 Unmodified _HETGHVLG_ 0 0 0 ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14;ADAMTS3|p.S556Hfs*105|1|0.26|ENSG00000156140|chr4:72313757-72313757|C/-|frameshift_variant;ENSG00000156140|ENST00000286657|ADAMTS3;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2450256347656 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 90.548 1 86.504 86.004 87.004 -4.0443 0 0 0 0.23749 1 17249 17249 0.0082765 0 1 19057 64;62 12445 12449 19032 19032 -0.016205144849436692 HETGHVLG 8 Unmodified _HETGHVLG_ 0 0 0 ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14;ADAMTS3|p.S556Hfs*105|1|0.26|ENSG00000156140|chr4:72313757-72313757|C/-|frameshift_variant;ENSG00000156140|ENST00000286657|ADAMTS3;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2431335449219 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 90.97 1 87.179 86.679 87.679 -3.7919 0 0 0 0.23749 1 17412 17412 0.0082765 0 1 19058 64;62 12445 12449 19033 19033 -0.016205144849436692 HETGHVLG 8 Unmodified _HETGHVLG_ 0 0 0 ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14;ADAMTS3|p.S556Hfs*105|1|0.26|ENSG00000156140|chr4:72313757-72313757|C/-|frameshift_variant;ENSG00000156140|ENST00000286657|ADAMTS3;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2389221191406 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 115.97 1 111.61 111.11 112.11 -4.3585 0 0 0 0.21486 1 22326 22326 10.183 0.83596 1 19059 64;62 12445 12449 19034 19034 -0.016205144849436692 HETGHVLG 8 Unmodified _HETGHVLG_ 0 0 0 ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14;ADAMTS3|p.S556Hfs*105|1|0.26|ENSG00000156140|chr4:72313757-72313757|C/-|frameshift_variant;ENSG00000156140|ENST00000286657|ADAMTS3;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23797607421875 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 116.66 1 112.31 111.81 112.81 -4.3585 0 0 0 0.21486 1 22458 22458 5.7604 0 1 19060 64;62 12445 12449 19035 19035 -0.016205144849436692 HETGHVLG 8 Unmodified _HETGHVLG_ 0 0 0 ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14;ADAMTS3|p.S556Hfs*105|1|0.26|ENSG00000156140|chr4:72313757-72313757|C/-|frameshift_variant;ENSG00000156140|ENST00000286657|ADAMTS3;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2511291503906 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 116.69 1 112.33 111.83 112.83 -4.3585 0 0 0 0.21486 1 22465 22465 5.7604 0 1 19061 64;62 12445 12449 19036 19036 -0.016205144849436692 HETGHVLG 8 Unmodified _HETGHVLG_ 0 0 0 ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14;ADAMTS3|p.S556Hfs*105|1|0.26|ENSG00000156140|chr4:72313757-72313757|C/-|frameshift_variant;ENSG00000156140|ENST00000286657|ADAMTS3;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.244140625 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 117.26 1 112.9 112.4 113.4 -4.3585 0 0 0 0.23366 1 22570 22570 0.12286 0 1 19062 64;62 12445 12449 19037 19037 -0.016205144849436692 HETLHFRRKFA 11 Unmodified _HETLHFRRKFA_ 0 0 0 REV__ENSG00000153896|ENST00000329285|ZNF599 REV__ENSG00000153896|ENST00000329285|ZNF599 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2439270019531 3 481.265227 1440.77385 NaN NaN NaN NaN NaN NaN NaN 113.89 1 109.33 108.83 109.83 -4.555 0 0 0 0.22632 1 21863 21863 0.026206 0 1 + 19063 17160 12446 12450 19038 19038 0.07109468459816526 HETLRHVREHQ 11 Unmodified _HETLRHVREHQ_ 0 0 0 REV__nc|ENSG00000151746|Q96G01-4|BICD1 REV__nc|ENSG00000151746|Q96G01-4|BICD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2412109375 3 481.251757 1440.73344 NaN NaN NaN NaN NaN NaN NaN 106.36 1 102.1 101.6 102.6 -4.2638 0 0 0 0.22632 1 20935 20935 0.11104 0.11048 1 + 19064 17083 12447 12451 19039 19039 0.030705020693858387 HETNQGEF 8 Unmodified _HETNQGEF_ 0 0 0 ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;MYSM1|p.K307Nfs*5|1|0.35|ENSG00000162601|chr1:58682123-58682123|T/-|frameshift_variant;ENST00000401044.7_1_1:59134235-59156019:-|nuORF ENSG00000162601|ENST00000472487|MYSM1 ENSG00000162601|ENST00000472487|MYSM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2412109375 2 481.204138 960.393724 NaN NaN NaN NaN NaN NaN NaN 106.38 1 102.12 101.62 102.62 -4.2638 0 0 0 0.21486 1 20940 20940 9.3474 2.6243 1 19065 5346 12448 12452 19040 19040 -0.08805729935420459 HETQQYEY 8 Unmodified _HETQQYEY_ 0 0 0 ENSG00000178522|ENST00000322937|AMBN;AMBN|p.P111Hfs*6|1|0.41|ENSG00000178522|chr4:70601453-70601453|C/-|frameshift_variant ENSG00000178522|ENST00000322937|AMBN ENSG00000178522|ENST00000322937|AMBN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 549.337646484375 2 549.230353 1096.44615 0.063328 3.4782E-05 -0.061452 -3.3751E-05 0.0018761 1.0304E-06 549.230359854295 55.508 0.37364 52.371 52.216 52.59 -3.1377 18 10 2 0 0 0 1.0095 1 10286 10286 10.183 1.5901 1 3152300 19066 6582 12449 12453 19041 19041 -0.098211915924594 HETQQYEY 8 Unmodified _HETQQYEY_ 0 0 0 ENSG00000178522|ENST00000322937|AMBN;AMBN|p.P111Hfs*6|1|0.41|ENSG00000178522|chr4:70601453-70601453|C/-|frameshift_variant ENSG00000178522|ENST00000322937|AMBN ENSG00000178522|ENST00000322937|AMBN MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 549.230353 1096.44615 0.40777 0.00022396 -0.67719 -0.00037193 -0.26942 -0.00014797 549.2300631075803 52.076 0.42512 52.076 51.861 52.286 0 -0.22532 -0.0005993 NaN 10.183 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3498900 19067 6582 12449 12453 -0.098211915924594 HETQQYEY 8 Unmodified _HETQQYEY_ 0 0 0 ENSG00000178522|ENST00000322937|AMBN;AMBN|p.P111Hfs*6|1|0.41|ENSG00000178522|chr4:70601453-70601453|C/-|frameshift_variant ENSG00000178522|ENST00000322937|AMBN ENSG00000178522|ENST00000322937|AMBN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 549.230353 1096.44615 -0.021075 -1.1575E-05 0.1888 0.00010369 0.16772 9.2119E-05 549.2304158316258 55.257 0.416 52.373 52.176 52.592 -2.8837 0.071664 0.00035195 NaN 10.183 17 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3708400 19068 6582 12449 12453 -0.098211915924594 HETQQYEY 8 Unmodified _HETQQYEY_ 0 0 0 ENSG00000178522|ENST00000322937|AMBN;AMBN|p.P111Hfs*6|1|0.41|ENSG00000178522|chr4:70601453-70601453|C/-|frameshift_variant ENSG00000178522|ENST00000322937|AMBN ENSG00000178522|ENST00000322937|AMBN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 549.230353 1096.44615 0.091682 5.0354E-05 -0.22855 -0.00012553 -0.13687 -7.5173E-05 549.230243748449 55.576 0.41826 52.386 52.147 52.565 -3.1895 0.084638 -0.0001065 NaN 10.183 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2745000 19069 6582 12449 12453 -0.098211915924594 HETQTTILH 9 Unmodified _HETQTTILH_ 0 0 0 REV__NFS1|p.K157T|1|0.41|ENSG00000244005|chr20:35690504-35690504|T/G|missense_variant REV__NFS1|p.K157T|1|0.41|ENSG00000244005|chr20:35690504-35690504|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2001953125 3 360.520851 1078.54072 -0.70643 -0.00025468 0.65599 0.0002365 -0.050442 -1.8186E-05 360.52088528142923 43.037 0.30794 40.431 40.176 40.484 -2.606 11 8 2 0 0 0 0.70585 1 7715 7715 28.495 9.1326 1 1246000 + 19070 19807 12450 12454 19042 19042 0.004593669495079666 HETTVDIF 8 Unmodified _HETTVDIF_ 0 0 0 ENSG00000158411|ENST00000289359|MITD1 ENSG00000158411|ENST00000289359|MITD1 ENSG00000158411|ENST00000289359|MITD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2428283691406 2 481.234907 960.455261 -0.34776 -0.00016735 -1.7496 -0.00084195 -2.0973 -0.0010093 481.2364848261557 106.74 0.14075 102.48 102.39 102.53 -4.2638 5 3 2 0 0 0 0.96284 1 20995 20995 13.508 4.1604 1 517250 19071 5163 12451 12455 19043 19043 -0.02654798236130773 HETVYSLL 8 Unmodified _HETVYSLL_ 0 0 0 ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.254150390625 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 106.31 1 102.05 101.55 102.55 -4.2638 0 0 0 0.20568 1 20924 20924 20.871 6.2895 1 19072 2011 12452 12456 19044 19044 0.00982078660570096 HETVYSLL 8 Unmodified _HETVYSLL_ 0 0 0 ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2536315917969 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 106.22 1 102.13 101.63 102.63 -4.0913 0 0 0 0.21323 1 20423 20423 14.582 0 1 19073 2011 12452 12456 19045 19045 0.00982078660570096 HEVAVEILEG 10 Unmodified _HEVAVEILEG_ 0 0 0 ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000103184|ENST00000251170|SEC14L5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7927856445312 2 548.287671 1094.56079 0.27066 0.0001484 1.6405 0.00089948 1.9112 0.0010479 548.7885848090651 146.98 0.27914 142.29 142.16 142.44 -4.6868 9 7 2 0 0 0 0.86078 1 29164 29164 17.113 6.289 1 1762800 19074 2171 12453 12457 19046 19046 0.017291178894765835 HEVEVGVL 8 Unmodified _HEVEVGVL_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENST00000483900.1_1_1:247015289-247040365:-|nuORF;ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1;ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 442.2318420410156 2 441.239993 880.465432 0.34649 0.00015289 -0.30125 -0.00013292 0.045242 1.9962E-05 441.2397688998935 83.505 0.95188 83.505 83.01 83.962 0 70 26 3 0 0 0 8448 1 16265 16265 45.004 25.613 1 3497400 19075 4962;9664 12454 12458 19047 19047 0.020418094890942484 HEVEVQYY 8 Unmodified _HEVEVQYY_ 0 0 0 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2;ENST00000533343.1_1_11:4103494-4104733:+|nuORF;nc|ENSG00000167323|Q13586-2|STIM1;nc|ENSG00000167323|Q13586|STIM1;ENSG00000167323|ENST00000526596|STIM1 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;nc|ENSG00000167323|Q13586-2|STIM1 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.278564453125 2 533.745639 1065.47673 NaN NaN NaN NaN NaN NaN NaN 64.71 1 61.713 61.213 62.213 -2.9975 0 0 0 2.2873E-11 1 12517 12517 109.63 35.233 1 19076 2539;5801 12455 12459 19048 19048 -0.053394132074117806 HEVEVQYY 8 Unmodified _HEVEVQYY_ 0 0 0 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2;ENST00000533343.1_1_11:4103494-4104733:+|nuORF;nc|ENSG00000167323|Q13586-2|STIM1;nc|ENSG00000167323|Q13586|STIM1;ENSG00000167323|ENST00000526596|STIM1 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;nc|ENSG00000167323|Q13586-2|STIM1 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2871704101562 2 533.745639 1065.47673 NaN NaN NaN NaN NaN NaN NaN 64.909 1 61.862 61.362 62.362 -3.047 0 0 0 0.0018495 1 12556 12556 89.427 29.037 1 19077 2539;5801 12455 12459 19049 19049 -0.053394132074117806 HEVKVIKLL 9 Unmodified _HEVKVIKLL_ 0 0 0 REV__ENSG00000108666|ENST00000577809|C17orf75 REV__ENSG00000108666|ENST00000577809|C17orf75 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.23846435546875 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 55.575 1 52.385 51.885 52.885 -3.1895 0 0 0 0.23508 1 10277 10277 1.0715 0 1 + 19078 15134 12456 12460 19050 19050 0.15527758679127146 HEVLTFIKY 9 Unmodified _HEVLTFIKY_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.332763671875 2 575.318774 1148.623 0.12461 7.1693E-05 0.8797 0.00050611 1.0043 0.0005778 575.3188731587771 125.16 0.78156 120.56 120.19 120.97 -4.5984 44 21 3 0 0 0 0.11032 2 24664 24664;24682 52.268 35.155 1 3941100 19079 4528 12457 12461 19051;19052 19051 0.054628890284675435 HEVLTFIKY 9 Unmodified _HEVLTFIKY_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3147583007812 2 575.318774 1148.623 0.23087 0.00013283 0.34705 0.00019967 0.57793 0.00033249 575.3186213361303 125.26 0.74013 120.61 120.24 120.98 -4.6495 41 20 3 0 0 0 0.081765 3 24091 24091;24109;24111 61.357 38.621 1 2742100 19080 4528 12457 12461 19053;19054;19055 19053 0.054628890284675435 HEVLTFIKY 9 Unmodified _HEVLTFIKY_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 575.318774 1148.623 0.42142 0.00024245 -0.19037 -0.00010952 0.23105 0.00013293 575.3188193415119 125.41 0.70276 120.64 120.27 120.97 -4.7681 0.038368 -0.00044821 NaN 61.357 43 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2359500 19081 4528 12457 12461 0.054628890284675435 HEVPYTTSF 9 Unmodified _HEVPYTTSF_ 0 0 0 ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF;ENSG00000119638|ENST00000238616|NEK9 ENST00000556170.5_1_14:75553702-75572727:-|nuORF ENST00000556170.5_1_14:75553702-75572727:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.265380859375 2 540.753464 1079.49238 0.55431 0.00029975 -0.71163 -0.00038482 -0.15732 -8.5069E-05 540.7530199629072 82.126 0.91891 82.126 81.683 82.602 0 72 25 4 0 0 0 0.017753 1 16011 16011 108 47.607 1 35923000 19082 3090 12458 12462 19056 19056 -0.0441912669039084 HEVPYTTSF 9 Unmodified _HEVPYTTSF_ 0 0 0 ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF;ENSG00000119638|ENST00000238616|NEK9 ENST00000556170.5_1_14:75553702-75572727:-|nuORF ENST00000556170.5_1_14:75553702-75572727:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2736206054688 2 540.753464 1079.49238 0.15137 8.1854E-05 -0.44297 -0.00023954 -0.29159 -0.00015768 540.7531321809219 85.956 0.82654 82.229 81.829 82.655 -3.727 71 22 4 0 0 0 4.037E-06 1 16782 16782 97.138 94.255 1 41542000 19083 3090 12458 12462 19057 19057 -0.0441912669039084 HEVPYTTSF 9 Unmodified _HEVPYTTSF_ 0 0 0 ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF;ENSG00000119638|ENST00000238616|NEK9 ENST00000556170.5_1_14:75553702-75572727:-|nuORF ENST00000556170.5_1_14:75553702-75572727:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2659912109375 2 540.753464 1079.49238 0.3337 0.00018045 -0.62009 -0.00033532 -0.2864 -0.00015487 540.7530570435483 86.19 0.87971 82.239 81.805 82.684 -3.9503 70 24 4 0 0 0 4.1063E-11 2 16379 16350;16379 156.16 95.766 1 35501000 19084 3090 12458 12462 19058;19059 19059 -0.0441912669039084 HEVPYTTSF 9 Unmodified _HEVPYTTSF_ 0 0 0 ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF;ENSG00000119638|ENST00000238616|NEK9 ENST00000556170.5_1_14:75553702-75572727:-|nuORF ENST00000556170.5_1_14:75553702-75572727:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2646484375 2 540.753464 1079.49238 0.14194 7.6756E-05 -0.39272 -0.00021237 -0.25078 -0.00013561 540.7531778622039 85.925 1.0841 82.196 81.715 82.8 -3.7289 82 30 4 0 0 0 0.017753 1 16443 16443 120.45 60.061 1 34483000 19085 3090 12458 12462 19060 19060 -0.0441912669039084 HEVSRCQVP 9 Unmodified _HEVSRCQVP_ 0 0 0 REV__ENST00000503886.5_1_10:63170188-63170446:-|nuORF REV__ENST00000503886.5_1_10:63170188-63170446:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.4744567871094 3 352.174797 1053.50256 NaN NaN NaN NaN NaN NaN NaN 102.18 1 102.18 101.68 102.68 0 0 0 0 0.19661 1 20068 20068 0.073264 0 1 + 19086 22459 12459 12463 19061 19061 -0.02204842236778859 HEWAHLRWG 9 Unmodified _HEWAHLRWG_ 0 0 0 CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;ENSG00000016490|ENST00000394711|CLCA1;CLCA4|p.I182Sfs*56|1|0.41|ENSG00000016602|chr1:86563749-86563749|A/-|frameshift_variant;CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant;ENSG00000016602|ENST00000370563|CLCA4;ENSG00000137975|ENST00000370565|CLCA2 CLCA1|p.Q725Rfs*34|1|0.33|ENSG00000016490|chr1:86498632-86498635|AAGT/-|frameshift_variant;ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 397.85772705078125 3 397.865063 1190.57336 NaN NaN NaN NaN NaN NaN NaN 10.113 1 9.0462 8.5462 9.5462 -1.0664 0 0 0 0.23508 1 1075 1075 0 0 1 19087 566;4133 12460 12464 19062 19062 -0.014303811369927644 HEYIFEGF 8 Unmodified _HEYIFEGF_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.L612Pfs*8|1|0.29|ENSG00000113360|chr5:31493214-31493215|-/G|frameshift_variant nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2731323242188 2 521.23745 1040.46035 0.21218 0.0001106 -0.31184 -0.00016254 -0.099659 -5.1946E-05 521.2374208102385 148.1 0.64951 148.1 147.82 148.47 0 39 18 3 0 0 0 0.56049 1 29595 29595 24.674 11.166 1 4425600 19088 2738 12461 12465 19063 19063 -0.058264943735366614 HEYIFEGF 8 Unmodified _HEYIFEGF_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.L612Pfs*8|1|0.29|ENSG00000113360|chr5:31493214-31493215|-/G|frameshift_variant nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.23745 1040.46035 -0.10188 -5.3103E-05 0.82138 0.00042813 0.7195 0.00037503 521.2375111542048 153.06 0.71689 148.29 147.87 148.58 -4.7684 0.095038 0.00078668 NaN 24.674 53 19 4 NaN NaN NaN NaN 0 NaN NaN 0 5247400 19089 2738 12461 12465 -0.058264943735366614 HEYIFEGF 8 Unmodified _HEYIFEGF_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.L612Pfs*8|1|0.29|ENSG00000113360|chr5:31493214-31493215|-/G|frameshift_variant nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.23745 1040.46035 -0.56474 -0.00029437 -0.2354 -0.0001227 -0.80015 -0.00041707 521.2377325230993 153.43 0.69113 148.17 147.85 148.54 -5.2669 -0.026309 -0.00031499 NaN 24.674 50 19 4 NaN NaN NaN NaN 0 NaN NaN 0 3352300 19090 2738 12461 12465 -0.058264943735366614 HEYIFEGF 8 Unmodified _HEYIFEGF_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.L612Pfs*8|1|0.29|ENSG00000113360|chr5:31493214-31493215|-/G|frameshift_variant nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.23745 1040.46035 0.4292 0.00022371 -0.14386 -7.4985E-05 0.28534 0.00014873 521.2373696600611 153.44 0.83676 148.22 147.72 148.55 -5.2209 0.023822 -0.00021956 NaN 24.674 39 23 2 NaN NaN NaN NaN 0 NaN NaN 0 4498900 19091 2738 12461 12465 -0.058264943735366614 HFAIRGRFKL 10 Unmodified _HFAIRGRFKL_ 0 0 0 REV__ENST00000581582.1_1_19:40788282-40788770:-|nuORF REV__ENST00000581582.1_1_19:40788282-40788770:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7542114257812 2 622.872374 1243.73019 NaN NaN NaN NaN NaN NaN NaN 136.91 1 132.27 131.77 132.77 -4.6413 0 0 0 0.22588 1 27014 27014 6.2058 0.47393 1 + 19092 23244 12462 12466 19064 19064 0.11807903753356186 HFCFSFFFY 9 Unmodified _HFCFSFFFY_ 0 0 0 REV__ENST00000262225.7_1_12:124081454-124081643:+|nuORF REV__ENST00000262225.7_1_12:124081454-124081643:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.763427734375 2 622.76532 1243.51609 NaN NaN NaN NaN NaN NaN NaN 68.868 1 68.868 68.368 69.368 0 0 0 0 0.23508 1 13322 13322 5.2307 2.2354 1 + 19093 20194 12463 12467 19065 19065 -0.09592984457549392 HFCFSFFFY 9 Unmodified _HFCFSFFFY_ 0 0 0 REV__ENST00000262225.7_1_12:124081454-124081643:+|nuORF REV__ENST00000262225.7_1_12:124081454-124081643:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7666625976562 2 622.76532 1243.51609 NaN NaN NaN NaN NaN NaN NaN 72.421 1 72.421 71.921 72.921 0 0 0 0 0.19691 1 14045 14045 0.12781 0 1 + 19094 20194 12463 12467 19066 19066 -0.09592984457549392 HFCNEYLTSF 10 Unmodified _HFCNEYLTSF_ 0 0 0 REV__ENSG00000124571|ENST00000265351|XPO5 REV__ENSG00000124571|ENST00000265351|XPO5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7631225585938 2 630.771331 1259.52811 NaN NaN NaN NaN NaN NaN NaN 133.23 1 128.36 127.86 128.86 -4.8726 0 0 0 2.8426 1 25595 25595 0.043787 0 1 + 19095 15786 12464 12468 19067 19067 -0.09127412505040411 HFCNEYLTSF 10 Unmodified _HFCNEYLTSF_ 0 0 0 REV__ENSG00000124571|ENST00000265351|XPO5 REV__ENSG00000124571|ENST00000265351|XPO5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7695922851562 2 630.771331 1259.52811 NaN NaN NaN NaN NaN NaN NaN 161.5 1 156.36 155.86 156.86 -5.1438 0 0 0 2.8426 1 31369 31369 0.043787 0.042406 1 + 19096 15786 12464 12468 19068 19068 -0.09127412505040411 HFCNEYLTSF 10 Unmodified _HFCNEYLTSF_ 0 0 0 REV__ENSG00000124571|ENST00000265351|XPO5 REV__ENSG00000124571|ENST00000265351|XPO5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7685546875 2 630.771331 1259.52811 NaN NaN NaN NaN NaN NaN NaN 60.801 1 57.578 57.078 58.078 -3.2237 0 0 0 2.8426 1 11374 11374 0.043787 0.042406 1 + 19097 15786 12464 12468 19069 19069 -0.09127412505040411 HFDELVGH 8 Unmodified _HFDELVGH_ 0 0 0 REV__IMPG1|p.R661H|1|0.34|ENSG00000112706|chr6:75947376-75947376|C/T|missense_variant REV__IMPG1|p.R661H|1|0.34|ENSG00000112706|chr6:75947376-75947376|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.03936767578125 3 318.48737 952.44028 -0.5875 -0.00018711 0.25709 8.1881E-05 -0.33041 -0.00010523 318.48741309810066 55.201 1.1744 55.201 54.662 55.836 0 96 32 4 0 0 0 1.0262 1 10510 10510 4.3292 2.6766 1 29317000 + 19098 23659 12465 12469 19070 19070 -0.03784245313477186 HFDELVGH 8 Unmodified _HFDELVGH_ 0 0 0 REV__IMPG1|p.R661H|1|0.34|ENSG00000112706|chr6:75947376-75947376|C/T|missense_variant REV__IMPG1|p.R661H|1|0.34|ENSG00000112706|chr6:75947376-75947376|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 318.48737 952.44028 -0.3763 -0.00011985 0.042019 1.3383E-05 -0.33428 -0.00010646 318.4873521929741 57.875 1.3551 54.964 54.293 55.648 -2.9105 -0.028709 1.4026E-05 NaN 4.3292 120 38 4 NaN NaN NaN NaN 0 NaN NaN 0 35741000 + 19099 23659 12465 12469 -0.03784245313477186 HFDELVGH 8 Unmodified _HFDELVGH_ 0 0 0 REV__IMPG1|p.R661H|1|0.34|ENSG00000112706|chr6:75947376-75947376|C/T|missense_variant REV__IMPG1|p.R661H|1|0.34|ENSG00000112706|chr6:75947376-75947376|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 318.48737 952.44028 -0.60692 -0.0001933 0.23802 7.5806E-05 -0.3689 -0.00011749 318.4874059024076 58.178 1.5025 54.973 54.216 55.718 -3.2052 -0.01968 0.0002013 NaN 4.3292 121 42 4 NaN NaN NaN NaN 0 NaN NaN 0 23666000 + 19100 23659 12465 12469 -0.03784245313477186 HFERQAAG 8 Unmodified _HFERQAAG_ 0 0 0 REV__ENSG00000151729|ENST00000281456|SLC25A4 REV__ENSG00000151729|ENST00000281456|SLC25A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24212646484375 2 458.225208 914.435863 0.10469 4.7972E-05 -0.054334 -2.4897E-05 0.050358 2.3075E-05 458.2251241272938 26.611 0.28468 24.976 24.822 25.107 -1.6347 10 7 2 0 0 0 0.60622 1 4435 4435 21.747 7.8406 1 666200 + 19101 17081 12466 12470 19071 19071 -0.024777097363880785 HFERQAAG 8 Unmodified _HFERQAAG_ 0 0 0 REV__ENSG00000151729|ENST00000281456|SLC25A4 REV__ENSG00000151729|ENST00000281456|SLC25A4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.225208 914.435863 0.30755 0.00014093 -0.055835 -2.5585E-05 0.25172 0.00011534 458.2250194006978 24.986 0.30459 24.986 24.813 25.118 0 0.039573 0.00023166 NaN 21.747 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 717000 + 19102 17081 12466 12470 -0.024777097363880785 HFFCSFKIHK 10 Unmodified _HFFCSFKIHK_ 0 0 0 REV__nc|ENSG00000100416|O75648-5|TRMU REV__nc|ENSG00000100416|O75648-5|TRMU MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.8912048339844 3 431.890221 1292.64883 NaN NaN NaN NaN NaN NaN NaN 158.78 1 158.78 158.28 159.28 0 0 0 0 0.22588 1 31882 31882 0.77653 0.27058 1 + 19103 14710 12467 12471 19072 19072 0.014214599990964416 HFFDHMYWRPW 11 Unmodified _HFFDHMYWRPW_ 0 0 0 REV__SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant REV__SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3616333007812 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 155.18 1 155.18 154.68 155.68 0 0 0 0 0.23698 1 31107 31107 0.35063 0.043601 1 + 19104 24594 12468 12472 19073 19073 -0.0770526905753286 HFFFIWQWREV 11 Unmodified _HFFFIWQWREV_ 0 0 0 REV__ENST00000512845.5_1_4:121737455-121843799:-|nuORF REV__ENST00000512845.5_1_4:121737455-121843799:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2731323242188 3 532.269978 1593.7881 0.74216 0.00039503 0.30615 0.00016295 1.0483 0.00055798 532.6045441264179 70.542 0.60286 66.962 66.695 67.298 -3.5798 50 16 4 0 0 0 0.663 1 13346 13346 0.00056442 0.00056442 1 6736200 + 19105 22563 12469 12473 19074 19074 0.014961208881231869 HFFRRQFGMA 10 Unmodified _HFFRRQFGMA_ 0 0 0 REV__nc|ENSG00000163050|Q8NI60-3|COQ8A REV__nc|ENSG00000163050|Q8NI60-3|COQ8A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 432.3968200683594 3 432.88547 1295.63458 NaN NaN NaN NaN NaN NaN NaN 174.17 1 169.28 168.78 169.78 -4.8916 0 0 0 0.22588 1 34663 34663 0.77653 0.27058 1 + 19106 17546 12470 12474 19075 19075 -0.0014119242919150565 HFGLFALDKR 10 Unmodified _HFGLFALDKR_ 0 0 0 ENST00000368073.7_1_1:160187225-160187318:-|nuORF ENST00000368073.7_1_1:160187225-160187318:-|nuORF ENST00000368073.7_1_1:160187225-160187318:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2902221679688 2 602.33529 1202.65603 0.33341 0.00020083 3.388 0.0020407 3.7214 0.0022415 602.335994357391 139.18 0.17163 134.33 134.25 134.42 -4.8492 6 4 2 0 0 0 1.1335 1 26820 26820 0.043787 0.035511 1 809770 19107 9088 12471 12475 19076 19076 0.06280515871162606 HFGLVTFVLF 10 Unmodified _HFGLVTFVLF_ 0 0 0 ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-3|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2564086914062 2 590.331685 1178.64882 NaN NaN NaN NaN NaN NaN NaN 71.817 1 71.817 71.317 72.317 0 0 0 0 0.22588 1 13916 13916 10.824 0.75 1 19108 2006 12472 12476 19077 19077 0.0666378327075563 HFGMATPL 8 Unmodified _HFGMATPL_ 0 0 0 REV__ENST00000564508.2_1_16:72461754-72462081:+|nuORF REV__ENST00000564508.2_1_16:72461754-72462081:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21624755859375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 175.77 1 170.87 170.37 171.37 -4.9008 0 0 0 0.21486 1 35035 35035 2.5775 0.27475 1 + 19109 23091 12473 12477 19078 19078 -0.019854982088986617 HFGPQEEL 8 Unmodified _HFGPQEEL_ 0 0 0 ENST00000572010.5_1_16:67986261-67997363:-|nuORF ENST00000572010.5_1_16:67986261-67997363:-|nuORF ENST00000572010.5_1_16:67986261-67997363:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7269592285156 2 478.727249 955.439946 0.087042 4.167E-05 0.21873 0.00010471 0.30578 0.00014638 478.7282515412213 82.863 0.30532 78.99 78.814 79.119 -3.8736 14 8 2 0 0 0 0.73426 1 15738 15738 9.3474 1.4373 1 772820 19110 11428 12474 12478 19079 19079 -0.03955665033333844 HFGPQEEL 8 Unmodified _HFGPQEEL_ 0 0 0 ENST00000572010.5_1_16:67986261-67997363:-|nuORF ENST00000572010.5_1_16:67986261-67997363:-|nuORF ENST00000572010.5_1_16:67986261-67997363:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72705078125 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 82.435 1 78.736 78.236 79.236 -3.6985 0 0 0 0.21486 1 15722 15722 12.532 3.1841 1 19111 11428 12474 12478 19080 19080 -0.03955665033333844 HFGVVYHG 8 Unmodified _HFGVVYHG_ 0 0 0 nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF nc|ENSG00000164078|Q04912-7|MST1R nc|ENSG00000164078|Q04912-7|MST1R MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2256164550781 2 458.22722 914.439886 NaN NaN NaN NaN NaN NaN NaN 26.742 1 24.82 24.32 25.32 -1.9222 0 0 0 0.21022 1 4442 4442 17.087 5.4463 1 19112 5504 12475 12479 19081 19081 -0.02075620242669629 HFLFRFIVFF 10 Unmodified _HFLFRFIVFF_ 0 0 0 ENST00000470945.1_1_2:179330657-179343310:-|nuORF;nc|ENSG00000079150|Q9Y680-1|FKBP7;ENST00000464248.1_1_2:179330632-179343265:-|nuORF;nc|ENSG00000079150|Q9Y680-3|FKBP7;ENSG00000079150|ENST00000424785|FKBP7 ENST00000470945.1_1_2:179330657-179343310:-|nuORF ENST00000470945.1_1_2:179330657-179343310:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22406005859375 3 458.257009 1371.7492 NaN NaN NaN NaN NaN NaN NaN 44.05 1 41.284 40.784 41.784 -2.7661 0 0 0 2.8426 1 7966 7966 1.9064 0.45126 1 19113 1590 12476 12480 19082 19082 0.07819440324396965 HFLNKGAK 8 Unmodified _HFLNKGAK_ 0 0 0 ENST00000389574.7_3_7:913202-913373:+|nuORF ENST00000389574.7_3_7:913202-913373:+|nuORF ENST00000389574.7_3_7:913202-913373:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2269287109375 2 457.763969 913.513385 -0.096134 -4.4007E-05 0.5481 0.0002509 0.45197 0.00020689 457.764215119924 47.847 0.51863 44.897 44.602 45.121 -2.9499 21 14 2 0 0 0 0.73426 1 8692 8692 9.3474 9.3474 1 1228800 19114 9356 12477 12481 19083 19083 0.05316928199806625 HFLSAYVSY 9 Unmodified _HFLSAYVSY_ 0 0 0 REV__nc|ENSG00000007516|O94812-7|BAIAP3 REV__nc|ENSG00000007516|O94812-7|BAIAP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7860107421875 2 543.766374 1085.5182 NaN NaN NaN NaN NaN NaN NaN 82.086 1 78.398 77.898 78.898 -3.6879 0 0 0 0.20628 1 15649 15649 21.747 11.673 1 + 19115 13889 12478 12482 19084 19084 -0.021142324480933894 HFLSFPRSWP 10 Unmodified _HFLSFPRSWP_ 0 0 0 ENST00000270066.10_1_19:44258808-44259084:-|nuORF ENST00000270066.10_1_19:44258808-44259084:-|nuORF ENST00000270066.10_1_19:44258808-44259084:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2351379394531 3 425.220735 1272.64038 NaN NaN NaN NaN NaN NaN NaN 137.69 1 137.69 137.19 138.19 0 0 0 0 0.22588 1 27313 27313 6.1918 3.5606 1 19116 8399 12479 12483 19085 19085 0.014962293541202598 HFPCVSCD 8 Unmodified _HFPCVSCD_ 0 0 0 ENST00000369244.6_1_6:99374760-99382655:-|nuORF;ENST00000229971.2_1_6:99374760-99395723:-|nuORF ENST00000369244.6_1_6:99374760-99382655:-|nuORF ENST00000369244.6_1_6:99374760-99382655:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 303.1795959472656 3 303.119413 906.336409 NaN NaN NaN NaN NaN NaN NaN 152.67 1 147.41 146.91 147.91 -5.2669 0 0 0 0.21486 1 29603 29603 0.45834 0 1 19117 8156 12480 12484 19086 19086 -0.12050611737004147 HFPRDYRFKWI 11 Unmodified _HFPRDYRFKWI_ 0 0 0 REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4 REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2684936523438 3 522.277244 1563.8099 NaN NaN NaN NaN NaN NaN NaN 125.62 1 120.97 120.47 121.47 -4.6495 0 0 0 0.22632 1 24170 24170 0.0059557 0 1 + 19118 15921 12481 12485 19087 19087 0.05054925636682128 HFPVPSQW 8 Unmodified _HFPVPSQW_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 nc|ENSG00000243244|Q9Y6Q2-2|STON1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.246826171875 3 333.16786 996.481751 NaN NaN NaN NaN NaN NaN NaN 94.451 1 94.451 93.951 94.951 0 0 0 0 0.21486 1 18497 18497 1.6526 0.45928 1 19119 1409 12482 12486 19088 19088 -0.016630645541454214 HFREKVMRWFW 11 Unmodified _HFREKVMRWFW_ 0 0 0 ENST00000557688.1_1_14:75130600-75131628:-|nuORF;nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1 ENST00000557688.1_1_14:75130600-75131628:-|nuORF ENST00000557688.1_1_14:75130600-75131628:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.28466796875 3 541.278479 1620.81361 0.25745 0.00013935 -2.7399 -0.001483 -2.4824 -0.0013437 541.6110129158742 165.32 0.10257 160.34 160.25 160.35 -4.9811 4 2 2 0 0 0 0.82427 1 32295 32295 0.40827 0.32491 1 4761700 19120 3092 12483 12487 19089 19089 0.028032721389081416 HFREKVMRWFW 11 Unmodified _HFREKVMRWFW_ 0 0 0 ENST00000557688.1_1_14:75130600-75131628:-|nuORF;nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1 ENST00000557688.1_1_14:75130600-75131628:-|nuORF ENST00000557688.1_1_14:75130600-75131628:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2791748046875 3 541.278479 1620.81361 NaN NaN NaN NaN NaN NaN NaN 72.335 1 68.796 68.296 69.296 -3.5385 0 0 0 0.22632 1 13718 13718 0.50596 0.50539 1 19121 3092 12483 12487 19090 19090 0.028032721389081416 HFRKLHLCLVK 11 Unmodified _HFRKLHLCLVK_ 0 0 0 REV__nc|ENSG00000140455|Q9Y6I4-2|USP3 REV__nc|ENSG00000140455|Q9Y6I4-2|USP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2416687011719 3 465.27982 1392.81763 NaN NaN NaN NaN NaN NaN NaN 68.218 1 64.682 64.182 65.182 -3.5362 0 0 0 0.22632 1 12815 12815 1.4551 1.2831 1 + 19122 24071 12484 12488 19091 19091 0.13693361632613232 HFSIEKNSY 9 Unmodified _HFSIEKNSY_ 0 0 0 TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant;ENSG00000160218|ENST00000291574|TRAPPC10 TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.0946044921875 3 375.517218 1123.52982 0.41526 0.00015594 -0.07594 -2.8517E-05 0.33932 0.00012742 375.51710290959943 29.236 0.42496 27.28 27.085 27.51 -1.9561 25 11 3 0 0 0 0.86532 1 5254 5254 5.2969 4.1035 1 575440 19123 5240 12485 12489 19092 19092 -0.027000354247547875 HFSIEKNSY 9 Unmodified _HFSIEKNSY_ 0 0 0 TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant;ENSG00000160218|ENST00000291574|TRAPPC10 TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.517218 1123.52982 0.32124 0.00012063 -0.43937 -0.00016499 -0.11813 -4.4359E-05 375.51707578749625 29.115 0.42318 27.222 26.979 27.402 -1.8928 -0.013252 -0.00029219 NaN 5.2969 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 805240 19124 5240 12485 12489 -0.027000354247547875 HFVPLDYFYQL 11 Unmodified _HFVPLDYFYQL_ 0 0 0 ENSG00000283434|ENST00000637986|CSNKA2IP ENSG00000283434|ENST00000637986|CSNKA2IP ENSG00000283434|ENST00000637986|CSNKA2IP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24493408203125 3 481.243206 1440.70779 NaN NaN NaN NaN NaN NaN NaN 122.84 1 122.84 122.34 123.34 0 0 0 0 0.22632 1 24211 24211 0.172 0 1 19125 8058 12486 12490 19093 19093 0.005062147744183676 HFVRFFLMFYK 11 Unmodified _HFVRFFLMFYK_ 0 0 0 ENSG00000205301|ENST00000511113|MGAT4D ENSG00000205301|ENST00000511113|MGAT4D ENSG00000205301|ENST00000511113|MGAT4D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 512.2846069335938 3 512.272442 1533.7955 NaN NaN NaN NaN NaN NaN NaN 129.69 1 125.06 124.56 125.56 -4.6292 0 0 0 0.22632 1 25557 25557 0.50596 0 1 19126 7639 12487 12491 19094 19094 0.049951371641782316 HFYWWEFIRQW 11 Unmodified _HFYWWEFIRQW_ 0 0 0 REV__ENST00000497457.5_1_1:113121036-113161548:-|nuORF REV__ENST00000497457.5_1_1:113121036-113161548:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 849.40234375 2 849.404235 1696.79392 NaN NaN NaN NaN NaN NaN NaN 37.798 1 35.46 34.96 35.96 -2.3375 0 0 0 0.23698 1 6702 6702 0 0 1 + 19127 22403 12488 12492 19095 19095 -0.026607806002175494 HGAAQVSQ 8 Unmodified _HGAAQVSQ_ 0 0 0 REV__ENST00000356098.9_1_22:51065112-51065154:-|nuORF REV__ENST00000356098.9_1_22:51065112-51065154:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 399.1636047363281 2 399.198659 796.382765 NaN NaN NaN NaN NaN NaN NaN 88.59 1 88.59 88.09 89.09 0 0 0 0 0.23487 1 17290 17290 0.12286 0 1 + 19128 20808 12489 12493 19096 19096 -0.023570875190443985 HGAPINSLL 9 Unmodified _HGAPINSLL_ 0 0 0 ENST00000506393.5_1_5:140047926-140048692:+|nuORF;WDR55|p.K341Rfs*8|1|0.37|ENSG00000120314|chr5:140669517-140669517|A/-|frameshift_variant;ENSG00000120314|ENST00000358337|WDR55 ENST00000506393.5_1_5:140047926-140048692:+|nuORF ENST00000506393.5_1_5:140047926-140048692:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 307.24822998046875 3 307.843265 920.507966 -0.68322 -0.00021032 0.82334 0.00025346 0.14012 4.3134E-05 307.84344842055395 26.282 0.75631 24.36 23.953 24.709 -1.9222 31 21 2 0 0 0 0.88237 1 4355 4355 1.1933 0 1 317220 19129 3125 12490 12494 19097 19097 0.044532046173458184 HGCCCNCCCC 10 Unmodified _HGCCCNCCCC_ 0 0 0 REV__ENSG00000147570|ENST00000276570|DNAJC5B REV__ENSG00000147570|ENST00000276570|DNAJC5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.0729064941406 3 350.073329 1047.19816 NaN NaN NaN NaN NaN NaN NaN 12.215 1 11.206 10.706 11.706 -1.0098 0 0 0 0.22588 1 1677 1677 0 0 1 + 19130 16940 12491 12495 19098 19098 -0.323552089069608 HGDLRQPP 8 Unmodified _HGDLRQPP_ 0 0 0 REV__ENSG00000185215|ENST00000560869|TNFAIP2 REV__ENSG00000185215|ENST00000560869|TNFAIP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23895263671875 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 179.37 1 174.46 173.96 174.96 -4.9114 0 0 0 0.2396 1 35791 35791 0.0082765 0 1 + 19131 18948 12492 12496 19099 19099 0.004668632977086418 HGDPCPGA 8 Unmodified _HGDPCPGA_ 0 0 0 ENST00000403682.7_1_22:20748860-20754928:+|nuORF ENST00000403682.7_1_22:20748860-20754928:+|nuORF ENST00000403682.7_1_22:20748860-20754928:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.2160339355469 2 377.152863 752.291173 NaN NaN NaN NaN NaN NaN NaN 14.06 1 12.946 12.446 13.446 -1.1142 0 0 0 0.2396 1 2082 2082 0.12286 0 1 19132 9524 12493 12497 19100 19100 -0.09488094207881659 HGDRPPHI 8 Unmodified _HGDRPPHI_ 0 0 0 ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000182568|Q01826-2|SATB1;ENST00000606296.1_1_3:18393447-18393747:-|nuORF;ENST00000467628.1_1_3:18393447-18419817:-|nuORF;SATB1|p.P626Hfs*81|1|0.31|ENSG00000182568|chr3:18349585-18349585|G/-|frameshift_variant ENSG00000182568|ENST00000338745|SATB1 ENSG00000182568|ENST00000338745|SATB1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16339111328125 3 310.163109 927.467498 NaN NaN NaN NaN NaN NaN NaN 42.254 1 39.648 39.148 40.148 -2.606 0 0 0 0.23182 1 7594 7594 0.68139 0.42991 1 19133 6795 12494 12498 19101 19101 0.0008628301756061774 HGDTALHA 8 Unmodified _HGDTALHA_ 0 0 0 nc|ENSG00000204498|Q9UBC1-2|NFKBIL1;nc|ENSG00000204498|Q9UBC1-3|NFKBIL1;ENSG00000204498|ENST00000376148|NFKBIL1 nc|ENSG00000204498|Q9UBC1-2|NFKBIL1 nc|ENSG00000204498|Q9UBC1-2|NFKBIL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.2138977050781 2 411.198659 820.382765 NaN NaN NaN NaN NaN NaN NaN 88.095 1 84.302 83.802 84.802 -3.7926 0 0 0 0.23366 1 17230 17230 0.12286 0 1 19134 7583 12495 12499 19102 19102 -0.03461087519042394 HGDTLLQPS 9 Unmodified _HGDTLLQPS_ 0 0 0 REV__nc|ENSG00000241350|Q13670|PMS2P11 REV__nc|ENSG00000241350|Q13670|PMS2P11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.8672180175781 3 323.166296 966.47706 -0.54056 -0.00017469 0.8965 0.00028972 0.35594 0.00011503 323.1663825512216 17.181 1.1828 17.181 16.369 17.552 0 99 33 5 0 0 0 0.87918 1 2693 2693 5.2969 1.3525 1 7135500 + 19135 24288 12496 12500 19103 19103 -0.007519934875631407 HGDTLLQPS 9 Unmodified _HGDTLLQPS_ 0 0 0 REV__nc|ENSG00000241350|Q13670|PMS2P11 REV__nc|ENSG00000241350|Q13670|PMS2P11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 323.166296 966.47706 -0.36144 -0.0001168 1.2616 0.00040769 0.90012 0.00029089 323.16634886920724 18.356 1.1819 17.045 16.169 17.351 -1.3109 0.0089958 -4.7989E-05 NaN 5.2969 90 33 5 NaN NaN NaN NaN 0 NaN NaN 0 3043800 + 19136 24288 12496 12500 -0.007519934875631407 HGDTLLQPS 9 Unmodified _HGDTLLQPS_ 0 0 0 REV__nc|ENSG00000241350|Q13670|PMS2P11 REV__nc|ENSG00000241350|Q13670|PMS2P11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 323.166296 966.47706 -1.8581 -0.00060048 1.711 0.00055295 -0.14708 -4.7532E-05 323.166823677997 18.397 1.0139 16.882 16.219 17.233 -1.5148 -0.1544 0.00038778 NaN 5.2969 41 28 2 NaN NaN NaN NaN 0 NaN NaN 0 698970 + 19137 24288 12496 12500 -0.007519934875631407 HGEGAGHP 8 Unmodified _HGEGAGHP_ 0 0 0 REV__ENST00000263674.3_1_11:73078903-73079227:+|nuORF REV__ENST00000263674.3_1_11:73078903-73079227:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21893310546875 2 381.169902 760.32525 NaN NaN NaN NaN NaN NaN NaN 42.461 1 39.855 39.355 40.355 -2.606 0 0 0 0.23366 1 7638 7638 1.7423 1.6194 1 + 19138 20219 12497 12501 19104 19104 -0.06449929724612957 HGEGCDFG 8 Unmodified _HGEGCDFG_ 0 0 0 ZNF521|p.G1058Afs*24|1|0.28|ENSG00000198795|chr18:25224745-25224745|C/-|frameshift_variant;ZNF521|p.T1305*|1|0.14|ENSG00000198795|chr18:25062735-25062736|-/TA|frameshift_variant;ENSG00000198795|ENST00000361524|ZNF521 ZNF521|p.G1058Afs*24|1|0.28|ENSG00000198795|chr18:25224745-25224745|C/-|frameshift_variant ZNF521|p.G1058Afs*24|1|0.28|ENSG00000198795|chr18:25224745-25224745|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.1072082519531 2 411.147778 820.281002 NaN NaN NaN NaN NaN NaN NaN 98.582 1 98.582 98.082 99.082 0 0 0 0 0.21486 1 19325 19325 0.79363 0.10326 1 19139 7495 12498 12502 19105 19105 -0.13632701933101998 HGEGDCDPCC 10 Unmodified _HGEGDCDPCC_ 0 0 0 REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 518.1522216796875 2 518.151877 1034.2892 NaN NaN NaN NaN NaN NaN NaN 170.47 1 165.56 165.06 166.06 -4.9149 0 0 0 0.22588 1 33709 33709 0 0 1 + 19140 24048 12499 12503 19106 19106 -0.22657259070297187 HGEISDDT 8 Unmodified _HGEISDDT_ 0 0 0 REV__MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant REV__MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2281188964844 2 437.182872 872.35119 NaN NaN NaN NaN NaN NaN NaN 46.256 1 43.389 42.889 43.889 -2.8666 0 0 0 0.23782 1 8415 8415 0.063987 0 1 + 19141 14483 12500 12504 19107 19107 -0.09009125063664669 HGEQSALI 8 Unmodified _HGEQSALI_ 0 0 0 REV__ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant REV__ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.3259582519531 2 427.721967 853.429381 -0.006533 -2.7943E-06 -0.47597 -0.00020358 -0.4825 -0.00020638 427.72174061639373 49.36 0.58512 46.361 46.033 46.618 -2.999 29 16 2 0 0 0 0.97994 1 9023 9023 15.768 13.465 1 1923600 + 19142 13064 12501 12505 19108 19108 -0.0031964768775196717 HGEQSALI 8 Unmodified _HGEQSALI_ 0 0 0 REV__ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant REV__ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 427.721967 853.429381 0.46286 0.00019798 -0.69184 -0.00029592 -0.22898 -9.7938E-05 427.72162316169744 46.711 0.59891 46.711 46.453 47.052 0 0.27153 -0.00040188 NaN 10.183 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1999900 + 19143 13064 12501 12505 -0.0031964768775196717 HGEQSALI 8 Unmodified _HGEQSALI_ 0 0 0 REV__ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant REV__ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 427.721967 853.429381 -0.25465 -0.00010892 0.029394 1.2573E-05 -0.22525 -9.6346E-05 427.7219431191623 49.244 0.63042 46.363 46.029 46.66 -2.8811 -0.076956 0.00021509 NaN 10.183 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2280800 + 19144 13064 12501 12505 -0.0031964768775196717 HGEQSALI 8 Unmodified _HGEQSALI_ 0 0 0 REV__ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant REV__ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 427.721967 853.429381 -0.32842 -0.00014047 0.28437 0.00012163 -0.044052 -1.8842E-05 427.72197531985057 49.331 0.60037 46.324 45.999 46.599 -3.0068 -0.11546 0.00043321 NaN 10.183 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1349500 + 19145 13064 12501 12505 -0.0031964768775196717 HGGAPGSH 8 Unmodified _HGGAPGSH_ 0 0 0 REV__ENST00000355973.7_1_6:29574677-29574933:-|nuORF REV__ENST00000355973.7_1_6:29574677-29574933:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2049255371094 2 360.164619 718.314686 NaN NaN NaN NaN NaN NaN NaN 50.704 1 47.822 47.322 48.322 -2.8824 0 0 0 0.21486 1 9621 9621 9.3474 0.75416 1 + 19146 20804 12502 12506 19109 19109 -0.05573912379054491 HGGASGGC 8 Unmodified _HGGASGGC_ 0 0 0 REV__ENST00000357758.3_1_14:53619812-53619884:-|nuORF REV__ENST00000357758.3_1_14:53619812-53619884:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.124755859375 2 323.124106 644.233658 NaN NaN NaN NaN NaN NaN NaN 111.36 1 106.87 106.37 107.37 -4.4915 0 0 0 0.21486 1 21374 21374 0.79363 0 1 + 19147 20830 12503 12507 19110 19110 -0.10268936413444862 HGGASGGC 8 Unmodified _HGGASGGC_ 0 0 0 REV__ENST00000357758.3_1_14:53619812-53619884:-|nuORF REV__ENST00000357758.3_1_14:53619812-53619884:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1337890625 2 323.124106 644.233658 NaN NaN NaN NaN NaN NaN NaN 179.31 1 174.44 173.94 174.94 -4.868 0 0 0 0.21486 1 35711 35711 0.79363 0 1 + 19148 20830 12503 12507 19111 19111 -0.10268936413444862 HGGGGGSW 8 Unmodified _HGGGGGSW_ 0 0 0 REV__ENST00000378980.7_1_9:34581122-34589618:-|nuORF REV__ENST00000378980.7_1_9:34581122-34589618:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 713.9514770507812 1 714.295413 713.288137 0.4494 0.000321 -0.10663 -7.6165E-05 0.34277 0.00024484 714.2996712524399 166.2 0.10037 166.2 166.13 166.23 0 4 2 2 0 0 0 1.028 1 33805 33805 0 0 1 11142000 + 19149 21128 12504 12508 19112 19112 -0.07997601270380983 HGGRTYSP 8 Unmodified _HGGRTYSP_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant;MUC5B|p.S2205Qfs*54|1|0.2|ENSG00000117983|chr11:1243486-1243487|-/C|frameshift_variant;MUC5B|p.E2447Vfs*233|1|0.15|ENSG00000117983|chr11:1244218-1244219|TG/-|frameshift_variant;MUC5B|p.P2717Qfs*3|2|0.21|ENSG00000117983|chr11:1245025-1245025|C/-|frameshift_variant;MUC5B|p.E2929Gfs*98|1|0.13|ENSG00000117983|chr11:1245660-1245661|-/GC|frameshift_variant;MUC5B|p.S3126Pfs*13|1|0.37|ENSG00000117983|chr11:1246251-1246251|C/-|frameshift_variant;MUC5B|p.P3417Qfs*3|1|0.41|ENSG00000117983|chr11:1247125-1247125|C/-|frameshift_variant;MUC5B|p.S3878Pfs*27|1|0.13|ENSG00000117983|chr11:1248507-1248507|C/-|frameshift_variant;MUC5B|p.S4017Lfs*56|1|0.22|ENSG00000117983|chr11:1248928-1248929|-/C|frameshift_variant;MUC5B|p.T4706Pfs*4|2|0.37|ENSG00000117983|chr11:1250996-1250996|A/-|frameshift_variant;MUC5B|p.F1125Lfs*31|1|0.34|ENSG00000117983|chr11:1238947-1238948|TC/-|frameshift_variant;ENST00000525715.5_1_11:1244314-1260349:+|nuORF ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.217041015625 2 437.711934 873.409314 -0.28929 -0.00012662 0.23471 0.00010274 -0.054571 -2.3887E-05 437.71213089963044 20.381 0.18145 18.996 18.88 19.062 -1.3847 6 4 2 0 0 0 0.99494 1 3143 3143 8.5933 0 1 384220 19150 3010 12505 12509 19113 19113 -0.03245398627711893 HGIDDQHFYE 10 Unmodified _HGIDDQHFYE_ 0 0 0 REV__nc|ENSG00000133794|O00327-6|BMAL1 REV__nc|ENSG00000133794|O00327-6|BMAL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.76123046875 2 630.767634 1259.52072 0.54819 0.00034578 -1.6708 -0.0010539 -1.1226 -0.00070812 631.2660036451203 67.895 0.32217 64.358 64.234 64.556 -3.5362 10 8 2 0 0 0 0.53283 1 12725 12725 0.69767 0 1 1523100 + 19151 16178 12506 12510 19114 19114 -0.09866428781106151 HGIGRQTTYEF 11 Unmodified _HGIGRQTTYEF_ 0 0 0 ENSG00000170509|ENST00000328546|HSD17B13;nc|ENSG00000170509|Q7Z5P4-2|HSD17B13 ENSG00000170509|ENST00000328546|HSD17B13 ENSG00000170509|ENST00000328546|HSD17B13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21685791015625 3 436.882559 1307.62585 -0.16749 -7.3173E-05 -4.4656 -0.0019509 -4.6331 -0.0020241 436.8794714023922 84.775 0.38229 81.111 80.883 81.265 -3.6641 12 10 2 0 0 0 0.96072 1 16599 16599 7.9454 2.8979 1 640180 19152 6075 12507 12511 19115 19115 -0.015658875847066156 HGIPLQGGK 9 Unmodified _HGIPLQGGK_ 0 0 0 ENSG00000152443|ENST00000317178|ZNF776 ENSG00000152443|ENST00000317178|ZNF776 ENSG00000152443|ENST00000317178|ZNF776 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7615966796875 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 86.568 1 86.568 86.068 87.068 0 0 0 0 0.23411 1 16896 16896 13.508 1.8676 1 19153 4921 12508 12512 19116 19116 0.05176624337184421 HGKAPILIA 9 Unmodified _HGKAPILIA_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5 ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2364196777344 2 460.28982 918.565087 NaN NaN NaN NaN NaN NaN NaN 14.519 1 13.308 12.808 13.808 -1.2106 0 0 0 0.19631 1 1930 1930 0.20686 0 1 19154 803 12509 12513 19117 19117 0.10254671893710565 HGLGYPIPS 9 Unmodified _HGLGYPIPS_ 0 0 0 REV__ENSG00000198265|ENST00000358691|HELZ REV__ENSG00000198265|ENST00000358691|HELZ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.16015625 3 314.167749 939.481417 NaN NaN NaN NaN NaN NaN NaN 86.5 1 82.771 82.271 83.271 -3.7289 0 0 0 0.23508 1 16541 16541 2.9952 0 1 + 19155 19400 12510 12514 19118 19118 0.009255157259872249 HGLLEKPCTP 10 Unmodified _HGLLEKPCTP_ 0 0 0 REV__ENSG00000134198|ENST00000369516|TSPAN2 REV__ENSG00000134198|ENST00000369516|TSPAN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7869262695312 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 164.39 1 159.6 159.1 160.1 -4.7898 0 0 0 0.22588 1 32850 32850 12.241 0 1 + 19156 16197 12511 12515 19119 19119 0.015977855998698942 HGLLSKSAQ 9 Unmodified _HGLLSKSAQ_ 0 0 0 HPSE|p.V493A|1|0.32|ENSG00000173083|chr4:83295498-83295498|A/G|missense_variant HPSE|p.V493A|1|0.32|ENSG00000173083|chr4:83295498-83295498|A/G|missense_variant HPSE|p.V493A|1|0.32|ENSG00000173083|chr4:83295498-83295498|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1745300292969 3 314.178536 939.513779 -0.84078 -0.00026415 0.74986 0.00023559 -0.090916 -2.8564E-05 314.1787282179378 25.328 2.2058 23.475 21.985 24.19 -1.8534 162 63 4 0 0 0 0.35556 1 4112 4112 12.241 2.2244 1 5109900 19157 11915 12512 12516 19120 19120 0.04160303128992382 HGLSALHPP 9 Unmodified _HGLSALHPP_ 0 0 0 ENST00000336596.6_1_3:89156771-89156981:+|nuORF ENST00000336596.6_1_3:89156771-89156981:+|nuORF ENST00000336596.6_1_3:89156771-89156981:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1592712402344 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 17.183 1 17.183 16.683 17.683 0 0 0 0 0.23508 1 2709 2709 2.9952 1.151 1 19158 8808 12513 12517 19121 19121 0.026003378201380656 HGLTLDSL 8 Unmodified _HGLTLDSL_ 0 0 0 REV__CRHBP|p.I217L|1|0.21|ENSG00000145708|chr5:76958845-76958845|A/C|missense_variant REV__CRHBP|p.I217L|1|0.21|ENSG00000145708|chr5:76958845-76958845|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 428.1407165527344 2 428.232168 854.449782 0.1716 7.3484E-05 -0.078411 -3.3578E-05 0.093187 3.9906E-05 428.232064943218 20.584 1.1257 19.187 18.653 19.779 -1.3966 69 31 3 0 0 0 0.97994 1 3570 3570 5.7604 0 1 3333300 + 19159 13581 12514 12518 19122 19122 0.01673522972032515 HGLTLDSL 8 Unmodified _HGLTLDSL_ 0 0 0 REV__CRHBP|p.I217L|1|0.21|ENSG00000145708|chr5:76958845-76958845|A/C|missense_variant REV__CRHBP|p.I217L|1|0.21|ENSG00000145708|chr5:76958845-76958845|A/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 428.232168 854.449782 0.075583 3.2367E-05 0.020356 8.7171E-06 0.095939 4.1084E-05 428.2320910915251 19.097 1.2137 19.097 18.511 19.725 0 -0.02991 -6.2376E-05 NaN 5.7604 79 34 3 NaN NaN NaN NaN 0 NaN NaN 0 5751300 + 19160 13581 12514 12518 0.01673522972032515 HGLTLDSL 8 Unmodified _HGLTLDSL_ 0 0 0 REV__CRHBP|p.I217L|1|0.21|ENSG00000145708|chr5:76958845-76958845|A/C|missense_variant REV__CRHBP|p.I217L|1|0.21|ENSG00000145708|chr5:76958845-76958845|A/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 428.232168 854.449782 -0.27654 -0.00011842 1.1435 0.0004897 0.86699 0.00037127 428.2322409118648 20.481 1.0444 19.097 18.604 19.649 -1.3847 -0.030147 0.00089958 NaN 5.7604 60 29 3 NaN NaN NaN NaN 0 NaN NaN 0 3305400 + 19161 13581 12514 12518 0.01673522972032515 HGNDSDDD 8 Unmodified _HGNDSDDD_ 0 0 0 ENST00000442031.1_1_X:51665090-51665543:-|nuORF ENST00000442031.1_1_X:51665090-51665543:-|nuORF ENST00000442031.1_1_X:51665090-51665543:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21722412109375 2 437.644111 873.273668 0.031665 1.3858E-05 -2.85 -0.0012473 -2.8183 -0.0012334 437.6434446084731 11.952 0.17465 11.952 11.893 12.068 0 5 4 2 0 0 0 1.0282 1 1623 1623 0 0 1 738690 19162 9897 12515 12519 19123 19123 -0.16803762999848004 HGNHFHDHCY 10 Unmodified _HGNHFHDHCY_ 0 0 0 REV__NOTCH4|p.P1441Lfs*17|1|0.22|ENSG00000204301|chr6:32199139-32199139|G/-|frameshift_variant REV__NOTCH4|p.P1441Lfs*17|1|0.22|ENSG00000204301|chr6:32199139-32199139|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 422.8335266113281 3 422.833434 1265.47847 NaN NaN NaN NaN NaN NaN NaN 4.1053 1 3.0964 2.5964 3.5964 -1.0089 0 0 0 2.8426 1 18 18 0 0 1 + 19163 19522 12516 12520 19124 19124 -0.14364682670452567 HGNLGLAML 9 Unmodified _HGNLGLAML_ 0 0 0 REV__ENSG00000153107|ENST00000341068|ANAPC1 REV__ENSG00000153107|ENST00000341068|ANAPC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 309.1806335449219 3 309.168984 924.485122 NaN NaN NaN NaN NaN NaN NaN 80.424 1 80.424 79.924 80.924 0 0 0 0 0.23508 1 15658 15658 1.0715 0 1 + 19164 17135 12517 12521 19125 19125 0.019858622282072247 HGNLGLAML 9 Unmodified _HGNLGLAML_ 0 0 0 REV__ENSG00000153107|ENST00000341068|ANAPC1 REV__ENSG00000153107|ENST00000341068|ANAPC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 309.16986083984375 3 309.168984 924.485122 NaN NaN NaN NaN NaN NaN NaN 82.887 1 79.28 78.78 79.78 -3.6079 0 0 0 0.23508 1 16200 16200 1.0715 0 1 + 19165 17135 12517 12521 19126 19126 0.019858622282072247 HGNLGLAML 9 Unmodified _HGNLGLAML_ 0 0 0 REV__ENSG00000153107|ENST00000341068|ANAPC1 REV__ENSG00000153107|ENST00000341068|ANAPC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 309.17010498046875 3 309.168984 924.485122 NaN NaN NaN NaN NaN NaN NaN 87.759 1 83.967 83.467 84.467 -3.7926 0 0 0 0.23508 1 17166 17166 1.0715 0.61312 1 + 19166 17135 12517 12521 19127 19127 0.019858622282072247 HGNNKVMAA 9 Unmodified _HGNNKVMAA_ 0 0 0 ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1 ENST00000569733.6_1_16:67575293-67580037:+|nuORF ENST00000569733.6_1_16:67575293-67580037:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.16015625 3 314.492238 940.454884 -0.5832 -0.00018341 -0.17807 -5.6002E-05 -0.76128 -0.00023942 314.4921189237687 86.621 0.80996 82.892 82.588 83.398 -3.7289 30 22 2 0 0 0 0.88211 1 16541 16541 2.9952 0 1 1209000 19167 1189 12518 12522 19128 19128 -0.017724964369904228 HGNNKVMAA 9 Unmodified _HGNNKVMAA_ 0 0 0 ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1 ENST00000569733.6_1_16:67575293-67580037:+|nuORF ENST00000569733.6_1_16:67575293-67580037:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 314.492238 940.454884 -0.33585 -0.00010562 -0.65783 -0.00020688 -0.99368 -0.0003125 314.49205671007996 86.547 0.4948 82.82 82.585 83.079 -3.727 -0.047559 -6.5058E-07 NaN 2.9952 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1437200 19168 1189 12518 12522 -0.017724964369904228 HGNNKVMAA 9 Unmodified _HGNNKVMAA_ 0 0 0 ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1 ENST00000569733.6_1_16:67575293-67580037:+|nuORF ENST00000569733.6_1_16:67575293-67580037:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 314.492238 940.454884 0.29035 9.1311E-05 -1.1373 -0.00035768 -0.84698 -0.00026637 314.4918280013745 86.842 0.76724 82.891 82.472 83.239 -3.9503 0.023612 -0.00045304 NaN 2.9952 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2498500 19169 1189 12518 12522 -0.017724964369904228 HGPHRGRGGR 10 Unmodified _HGPHRGRGGR_ 0 0 0 REV__nc|ENSG00000174953|Q9H2U1-3|DHX36 REV__nc|ENSG00000174953|Q9H2U1-3|DHX36 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.793701171875 2 543.792447 1085.57034 NaN NaN NaN NaN NaN NaN NaN 9.2931 1 9.2931 8.7931 9.7931 0 0 0 0 0.22588 1 1059 1059 0 0 1 + 19170 18443 12519 12523 19129 19129 0.030977885289075857 HGPRCPLLS 9 Unmodified _HGPRCPLLS_ 0 0 0 REV__IFRD2|p.G284Afs*55|1|0.34|ENSG00000214706|chr3:50289567-50289567|C/-|frameshift_variant REV__IFRD2|p.G284Afs*55|1|0.34|ENSG00000214706|chr3:50289567-50289567|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2643737792969 2 490.260736 978.50692 NaN NaN NaN NaN NaN NaN NaN 36.721 1 34.384 33.884 34.884 -2.3375 0 0 0 0.19684 1 6485 6485 0.029283 0 1 + 19171 23646 12520 12524 19130 19130 0.01680666976790235 HGPRWAPILLT 11 Unmodified _HGPRWAPILLT_ 0 0 0 ENST00000573569.5_1_17:79649172-79650609:-|nuORF ENST00000573569.5_1_17:79649172-79650609:-|nuORF ENST00000573569.5_1_17:79649172-79650609:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76611328125 2 630.864215 1259.71388 NaN NaN NaN NaN NaN NaN NaN 73.392 1 70.082 69.582 70.582 -3.3107 0 0 0 0.22632 1 14308 14308 0.0059557 0 1 19172 11437 12521 12525 19131 19131 0.09440777796612565 HGQKRWPA 8 Unmodified _HGQKRWPA_ 0 0 0 REV__ENST00000376088.7_2_X:49688348-49689877:+|nuORF REV__ENST00000376088.7_2_X:49688348-49689877:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2656555175781 2 490.264668 978.514782 NaN NaN NaN NaN NaN NaN NaN 148.89 1 148.89 148.39 149.39 0 0 0 0 0.23366 1 29800 29800 0.62683 0.50396 1 + 19173 21073 12522 12526 19132 19132 0.024665622885436278 HGQSKRMS 8 Unmodified _HGQSKRMS_ 0 0 0 REV__ENST00000423686.1_1_13:52758533-52760885:-|nuORF REV__ENST00000423686.1_1_13:52758533-52760885:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.23040771484375 3 310.823988 929.450133 -0.11573 -3.597E-05 -0.59534 -0.00018504 -0.71106 -0.00022101 310.8237662105315 32.422 0.49822 30.192 29.936 30.434 -2.2305 30 13 3 0 0 0 1.0268 1 5874 5874 0.45834 0.45834 1 1839500 + 19174 21466 12523 12527 19133 19133 -0.017413805797446003 HGQSKRMS 8 Unmodified _HGQSKRMS_ 0 0 0 REV__ENST00000423686.1_1_13:52758533-52760885:-|nuORF REV__ENST00000423686.1_1_13:52758533-52760885:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 310.823988 929.450133 -0.45413 -0.00014116 -0.074751 -2.3234E-05 -0.52888 -0.00016439 310.823903456446 30.185 0.46151 30.185 29.955 30.417 0 -0.0087856 0.00034758 NaN 0.45834 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2042000 + 19175 21466 12523 12527 -0.017413805797446003 HGQSKRMS 8 Unmodified _HGQSKRMS_ 0 0 0 REV__ENST00000423686.1_1_13:52758533-52760885:-|nuORF REV__ENST00000423686.1_1_13:52758533-52760885:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 310.823988 929.450133 0.26768 8.32E-05 -0.82652 -0.0002569 -0.55884 -0.0001737 310.82364385137276 32.257 0.48612 30.23 29.94 30.427 -2.0264 0.036646 -0.00035342 NaN 0.45834 31 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1502800 + 19176 21466 12523 12527 -0.017413805797446003 HGQSKRMS 8 Unmodified _HGQSKRMS_ 0 0 0 REV__ENST00000423686.1_1_13:52758533-52760885:-|nuORF REV__ENST00000423686.1_1_13:52758533-52760885:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 310.823988 929.450133 -0.23008 -7.1513E-05 -0.26263 -8.163E-05 -0.4927 -0.00015314 310.82379342804103 32.316 0.41934 30.168 29.999 30.419 -2.1483 -0.025623 0.0001724 NaN 0.45834 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1319000 + 19177 21466 12523 12527 -0.017413805797446003 HGRRLRGA 8 Unmodified _HGRRLRGA_ 0 0 0 REV__ENSG00000253368|ENST00000522111|TRNP1 REV__ENSG00000253368|ENST00000522111|TRNP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.2220458984375 3 308.186248 921.536915 NaN NaN NaN NaN NaN NaN NaN 133.67 1 129.03 128.53 129.53 -4.6399 0 0 0 0.21486 1 26359 26359 1.8442 0 1 + 19178 19835 12524 12528 19134 19134 0.0730078675697996 HGSACGGG 8 Unmodified _HGSACGGG_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1;PKHD1|p.H2893Pfs*2|1|0.4|ENSG00000170927|chr6:51754903-51754904|-/G|frameshift_variant nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1015930175781 2 323.124106 644.233658 NaN NaN NaN NaN NaN NaN NaN 98.852 1 94.582 94.082 95.082 -4.2692 0 0 0 0.21486 1 18899 18899 0 0 1 19179 6113 12525 12529 19135 19135 -0.10268936413433494 HGSAKRICG 9 Unmodified _HGSAKRICG_ 0 0 0 nc|ENSG00000112365|O43167-2|ZBTB24;ZBTB24|p.Q553Sfs*10|1|0.12|ENSG00000112365|chr6:109466288-109466289|-/A|frameshift_variant;ENSG00000112365|ENST00000230122|ZBTB24 nc|ENSG00000112365|O43167-2|ZBTB24 nc|ENSG00000112365|O43167-2|ZBTB24 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16339111328125 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 42.268 1 39.662 39.162 40.162 -2.606 0 0 0 0.23508 1 7597 7597 5.2969 0 1 19180 2692 12526 12530 19136 19136 0.004232097999192774 HGSALPAH 8 Unmodified _HGSALPAH_ 0 0 0 REV__nc|ENSG00000177300|Q8N7P3|CLDN22 REV__nc|ENSG00000177300|Q8N7P3|CLDN22 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 395.2063903808594 2 395.203744 788.392936 NaN NaN NaN NaN NaN NaN NaN 78.269 1 78.269 77.769 78.769 0 0 0 0 0.21486 1 15232 15232 5.7604 2.8712 1 + 19181 24185 12527 12531 19137 19137 -0.00972479793824732 HGSGQMRLY 9 Unmodified _HGSGQMRLY_ 0 0 0 REV__ENST00000538355.1_1_11:64014650-64015532:+|nuORF REV__ENST00000538355.1_1_11:64014650-64015532:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.0733947753906 3 350.171276 1047.492 -0.13758 -4.8178E-05 -0.023139 -8.1025E-06 -0.16072 -5.628E-05 350.5052535260037 32.565 0.42416 30.334 30.153 30.578 -2.2305 18 11 3 0 0 0 0.87918 1 5901 5901 2.7352 0.89096 1 567980 + 19182 22840 12528 12532 19138 19138 -0.029848248912003328 HGSGQMRLY 9 Unmodified _HGSGQMRLY_ 0 0 0 REV__ENST00000538355.1_1_11:64014650-64015532:+|nuORF REV__ENST00000538355.1_1_11:64014650-64015532:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 350.171276 1047.492 -0.23542 -8.2436E-05 -0.49755 -0.00017423 -0.73297 -0.00025667 350.1723076537552 32.496 0.38091 30.348 30.071 30.452 -2.1483 0.0067308 -0.00026796 NaN 2.7352 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 467550 + 19183 22840 12528 12532 -0.029848248912003328 HGSHTDFPVTY 11 Unmodified _HGSHTDFPVTY_ 0 0 0 REV__KIF27|p.L589S|1|0.23|ENSG00000165115|chr9:83891338-83891338|A/G|missense_variant REV__KIF27|p.L589S|1|0.23|ENSG00000165115|chr9:83891338-83891338|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7728881835938 2 630.785827 1259.5571 NaN NaN NaN NaN NaN NaN NaN 154.93 1 149.64 149.14 150.14 -5.2854 0 0 0 0.22862 1 30046 30046 9.3831 2.2814 1 + 19184 23716 12529 12533 19139 19139 -0.06229551884371176 HGSHTDFPVTY 11 Unmodified _HGSHTDFPVTY_ 0 0 0 REV__KIF27|p.L589S|1|0.23|ENSG00000165115|chr9:83891338-83891338|A/G|missense_variant REV__KIF27|p.L589S|1|0.23|ENSG00000165115|chr9:83891338-83891338|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7491455078125 2 630.785827 1259.5571 NaN NaN NaN NaN NaN NaN NaN 154.8 1 149.55 149.05 150.05 -5.2526 0 0 0 0.22862 1 30016 30016 9.3831 2.66 1 + 19185 23716 12529 12533 19140 19140 -0.06229551884371176 HGSRITTLVC 10 Unmodified _HGSRITTLVC_ 0 0 0 REV__nc|ENSG00000143164|Q58WW2-4|DCAF6 REV__nc|ENSG00000143164|Q58WW2-4|DCAF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7899780273438 2 543.789858 1085.56516 0.33146 0.00018025 0.28841 0.00015683 0.61987 0.00033708 543.7900055810392 29.051 0.24722 27.219 27.04 27.287 -1.8319 9 6 2 0 0 0 0.74842 1 4913 4913 6.2058 0.47393 1 299710 + 19186 24080 12530 12534 19141 19141 0.0258030383138248 HGTEHAVV 8 Unmodified _HGTEHAVV_ 0 0 0 REV__ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;REV__ENSG00000156140|ENST00000286657|ADAMTS3 REV__ENSG00000156140|ENST00000286657|ADAMTS3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.252197265625 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 113.25 1 113.25 112.75 113.75 0 0 0 0 0.21486 1 22267 22267 5.7604 0.52976 1 + 19187 17247;12947 12531 12535 19142 19142 -0.01620514484955038 HGTEHAVV 8 Unmodified _HGTEHAVV_ 0 0 0 REV__ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;REV__ENSG00000156140|ENST00000286657|ADAMTS3 REV__ENSG00000156140|ENST00000286657|ADAMTS3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2487487792969 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 118.2 1 113.79 113.29 114.29 -4.4088 0 0 0 0.23366 1 22747 22747 0.12286 0.11459 1 + 19188 17247;12947 12531 12535 19143 19143 -0.01620514484955038 HGTLRKLQL 9 Unmodified _HGTLRKLQL_ 0 0 0 nc|ENSG00000143257|Q14994-5|NR1I3;nc|ENSG00000143257|Q14994-6|NR1I3;ENSG00000143257|ENST00000367983|NR1I3;nc|ENSG00000143257|Q14994|NR1I3;nc|ENSG00000143257|Q14994-8|NR1I3;nc|ENSG00000143257|Q14994-9|NR1I3;nc|ENSG00000143257|Q14994-10|NR1I3;nc|ENSG00000143257|Q14994-11|NR1I3;nc|ENSG00000143257|Q14994-12|NR1I3;nc|ENSG00000143257|Q14994-13|NR1I3 nc|ENSG00000143257|Q14994-5|NR1I3 nc|ENSG00000143257|Q14994-5|NR1I3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.07513427734375 3 355.889097 1064.64546 -0.70312 -0.00025023 0.73062 0.00026002 0.027497 9.7858E-06 355.889347906153 42.97 0.27161 40.364 40.142 40.413 -2.606 9 7 2 0 0 0 0.88211 1 7716 7716 2.9952 0 1 483700 19189 4468 12532 12536 19144 19144 0.11572533216735792 HGTVLLRDVV 10 Unmodified _HGTVLLRDVV_ 0 0 0 nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-3|TRIM3;ENSG00000110171|ENST00000345851|TRIM3 nc|ENSG00000110171|O75382-4|TRIM3 nc|ENSG00000110171|O75382-4|TRIM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.86968994140625 3 370.220624 1107.64004 -0.058499 -2.1658E-05 -0.074366 -2.7532E-05 -0.13286 -4.9189E-05 370.22055411608187 39.392 0.93533 39.392 38.924 39.859 0 75 26 4 0 0 0 1.1313 1 7400 7400 0.13989 0 1 8819900 19190 2568 12533 12537 19145 19145 0.09052809634272307 HGVRQRVL 8 Unmodified _HGVRQRVL_ 0 0 0 REV__CUL7|p.I26V|1|0.26|ENSG00000044090|chr6:43052713-43052713|T/C|missense_variant REV__CUL7|p.I26V|1|0.26|ENSG00000044090|chr6:43052713-43052713|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.186279296875 3 322.198154 963.572632 -0.63958 -0.00020607 -0.094748 -3.0528E-05 -0.73433 -0.0002366 322.19835622295363 16.643 0.13968 15.427 15.355 15.495 -1.2159 5 3 2 0 0 0 1.0281 1 2637 2637 0.45834 0 1 146960 + 19191 13618 12534 12538 19146 19146 0.08938824213976204 HGYEEPYF 8 Unmodified _HGYEEPYF_ 0 0 0 ZNF26|p.S177Vfs*108|1|0.32|ENSG00000198393|chr12:133010398-133010399|-/TG|frameshift_variant;ENSG00000198393|ENST00000328654|ZNF26 ZNF26|p.S177Vfs*108|1|0.32|ENSG00000198393|chr12:133010398-133010399|-/TG|frameshift_variant ZNF26|p.S177Vfs*108|1|0.32|ENSG00000198393|chr12:133010398-133010399|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2721557617188 2 521.219257 1040.42396 0.2487 0.00012963 -1.1098 -0.00057846 -0.86112 -0.00044883 521.2188458939562 28.981 1.4631 28.981 28.318 29.782 0 98 41 3 0 0 0 0.53444 2 5164 5164;5200 26.341 9.2284 1 7839900 19192 7449 12535 12539 19147;19148 19147 -0.09463371270248899 HHASSCHYEQR 11 Unmodified _HHASSCHYEQR_ 0 0 0 REV__ENST00000532017.5_1_11:3832520-3846091:+|nuORF REV__ENST00000532017.5_1_11:3832520-3846091:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 677.7734985351562 2 677.788909 1353.56327 NaN NaN NaN NaN NaN NaN NaN 10.983 1 10.983 10.483 11.483 0 0 0 0 0.23698 1 1421 1421 0 0 1 + 19193 22777 12536 12540 19149 19149 -0.09937356924524465 HHCMEEER 8 Unmodified _HHCMEEER_ 0 0 0 REV__nc|ENSG00000205578|A6NF01|POM121B REV__nc|ENSG00000205578|A6NF01|POM121B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.55682373046875 3 357.476259 1069.40695 -0.50917 -0.00018202 -0.69865 -0.00024975 -1.2078 -0.00043177 357.476028531268 89.946 0.38513 86.168 85.978 86.363 -3.7779 13 10 2 0 0 0 8448 1 17182 17182 1.3295 1.2563 1 668830 + 19194 24243 12537 12541 19150 19150 -0.1249793841934661 HHDPLKRY 8 Unmodified _HHDPLKRY_ 0 0 0 REV__AADACL4|p.D384*|1|0.15|ENSG00000204518|chr1:12666654-12666655|-/T|frameshift_variant REV__AADACL4|p.D384*|1|0.15|ENSG00000204518|chr1:12666654-12666655|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2872924804688 2 533.283057 1064.55156 NaN NaN NaN NaN NaN NaN NaN 74.706 1 71.112 70.612 71.612 -3.594 0 0 0 0.21486 1 14192 14192 8.5933 0.68312 1 + 19195 12877 12538 12542 19151 19151 0.021868141144750552 HHEEDMDMSD 10 Unmodified _HHEEDMDMSD_ 0 0 0 nc|ENSG00000116754|Q05519-2|SRSF11;ENSG00000116754|ENST00000370949|SRSF11 nc|ENSG00000116754|Q05519-2|SRSF11 nc|ENSG00000116754|Q05519-2|SRSF11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7515869140625 2 623.210977 1244.4074 -0.40673 -0.00025348 0.37515 0.0002338 -0.031578 -1.968E-05 623.2108412460445 22.154 0.17295 20.433 20.36 20.533 -1.7211 7 4 2 0 0 0 0.6817 1 3515 3515 13.042 9.7612 1 313500 19196 2952 12539 12543 19152 19152 -0.20502608280821732 HHEKNSFML 9 Unmodified _HHEKNSFML_ 0 0 0 REV__AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant REV__AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2198486328125 3 381.518564 1141.53386 -0.077147 -2.9433E-05 2.2787 0.00086937 2.2016 0.00083994 381.5197061184015 25.296 0.17193 25.296 25.186 25.358 0 6 4 2 0 0 0 0.87262 1 4360 4360 8.7454 0.58988 1 546550 + 19197 12994 12540 12544 19153 19153 -0.031242692026808072 HHFPISGKR 9 Unmodified _HHFPISGKR_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 83.448 1 83.448 82.948 83.948 0 0 0 0 0.23508 1 16272 16272 2.7352 0.23671 1 + 19198 16781 12541 12545 19154 19154 0.047508068684237514 HHFPISGKR 9 Unmodified _HHFPISGKR_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2018127441406 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 102.42 1 102.42 101.92 102.92 0 0 0 0 0.23508 1 20116 20116 2.7352 0 1 + 19199 16781 12541 12545 19155 19155 0.047508068684237514 HHFPISGKR 9 Unmodified _HHFPISGKR_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201904296875 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 110.55 1 110.55 110.05 111.05 0 0 0 0 0.23508 1 21743 21743 1.0715 0 1 + 19200 16781 12541 12545 19156 19156 0.047508068684237514 HHFPISGKR 9 Unmodified _HHFPISGKR_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015380859375 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 76.599 1 73.184 72.684 73.684 -3.4151 0 0 0 0.23508 1 14950 14950 2.7352 0 1 + 19201 16781 12541 12545 19157 19157 0.047508068684237514 HHFPISGKR 9 Unmodified _HHFPISGKR_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016296386719 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 103.74 1 99.397 98.897 99.897 -4.346 0 0 0 0.23508 1 19872 19872 2.7352 0.23671 1 + 19202 16781 12541 12545 19158 19158 0.047508068684237514 HHFPISGKR 9 Unmodified _HHFPISGKR_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013854980469 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 84.308 1 80.597 80.097 81.097 -3.7117 0 0 0 0.23508 1 16102 16102 2.7352 0 1 + 19203 16781 12541 12545 19159 19159 0.047508068684237514 HHFPISGKR 9 Unmodified _HHFPISGKR_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 101.8 1 97.774 97.274 98.274 -4.0212 0 0 0 0.23508 1 19560 19560 2.7352 0 1 + 19204 16781 12541 12545 19160 19160 0.047508068684237514 HHFPISGKR 9 Unmodified _HHFPISGKR_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2012023925781 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 110.04 1 105.86 105.36 106.36 -4.1826 0 0 0 0.23508 1 21177 21177 2.7352 0.23671 1 + 19205 16781 12541 12545 19161 19161 0.047508068684237514 HHGCCCGC 8 Unmodified _HHGCCCGC_ 0 0 0 ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-2|FAM221B ENSG00000204930|ENST00000423537|FAM221B ENSG00000204930|ENST00000423537|FAM221B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.11273193359375 2 410.111303 818.208054 NaN NaN NaN NaN NaN NaN NaN 159.06 1 154.27 153.77 154.77 -4.7952 0 0 0 0.21486 1 31630 31630 0 0 1 19206 7621 12542 12546 19162 19162 -0.20832193523392561 HHGCCCGC 8 Unmodified _HHGCCCGC_ 0 0 0 ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-2|FAM221B ENSG00000204930|ENST00000423537|FAM221B ENSG00000204930|ENST00000423537|FAM221B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 410.11309814453125 2 410.111303 818.208054 NaN NaN NaN NaN NaN NaN NaN 140.92 1 135.93 135.43 136.43 -4.9877 0 0 0 0.21486 1 27127 27127 0.79363 0.79363 1 19207 7621 12542 12546 19163 19163 -0.20832193523392561 HHGHPESH 8 Unmodified _HHGHPESH_ 0 0 0 MN1|p.G103E|1|0.3|ENSG00000169184|chr22:27800236-27800236|C/T|missense_variant MN1|p.G103E|1|0.3|ENSG00000169184|chr22:27800236-27800236|C/T|missense_variant MN1|p.G103E|1|0.3|ENSG00000169184|chr22:27800236-27800236|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 469.1006774902344 2 469.204807 936.395061 NaN NaN NaN NaN NaN NaN NaN 179.27 1 174.4 173.9 174.9 -4.868 0 0 0 0.21486 1 35700 35700 2.5775 0.27475 1 19208 12152 12543 12547 19164 19164 -0.07568051056000513 HHHGHLNPP 9 Unmodified _HHHGHLNPP_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6908569335938 2 523.257374 1044.50019 -0.53733 -0.00028116 -0.067699 -3.5424E-05 -0.60503 -0.00031659 523.7595271273221 38.117 0.27111 35.649 35.405 35.676 -2.4688 10 7 2 0 0 0 0.79204 1 7013 7013 16.942 12.998 1 1357800 + 19209 16525 12544 12548 19165 19165 -0.020275098595675445 HHHHHLSP 8 Unmodified _HHHHHLSP_ 0 0 0 ENSG00000110395|ENST00000264033|CBL;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant;CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.0438537597656 3 334.498603 1000.47398 -0.91796 -0.00030706 -0.47305 -0.00015823 -1.391 -0.00046529 334.49841238245875 14.808 1.9565 13.694 12.979 14.936 -1.1142 143 55 4 0 0 0 1.0243 1 2393 2393 7.2892 1.9923 1 6396200 19210 400 12545 12549 19166 19166 -0.02623779031068807 HHHHHLSP 8 Unmodified _HHHHHLSP_ 0 0 0 ENSG00000110395|ENST00000264033|CBL;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant;CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 334.498603 1000.47398 -0.53076 -0.00017754 -0.77585 -0.00025952 -1.3066 -0.00043706 334.498302488443 13.942 1.8887 13.942 13.272 15.161 0 0.1962 -0.00011871 NaN 3.9444 140 53 4 NaN NaN NaN NaN 0 NaN NaN 0 10257000 19211 400 12545 12549 -0.02623779031068807 HHHHHLSP 8 Unmodified _HHHHHLSP_ 0 0 0 ENSG00000110395|ENST00000264033|CBL;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant;CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 334.498603 1000.47398 -0.60524 -0.00020245 -0.76307 -0.00025524 -1.3683 -0.0004577 334.49831003715053 14.773 1.5513 13.6 13.001 14.552 -1.173 -0.14494 -0.00010588 NaN 3.9444 114 44 4 NaN NaN NaN NaN 0 NaN NaN 0 2558900 19212 400 12545 12549 -0.02623779031068807 HHHPSELV 8 Unmodified _HHHPSELV_ 0 0 0 REV__DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant REV__DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7423400878906 2 478.240858 954.467164 -0.036935 -1.7664E-05 -0.032845 -1.5708E-05 -0.06978 -3.3372E-05 478.24074174626116 18.516 0.27958 17.205 17.037 17.317 -1.3109 13 7 2 0 0 0 0.6199 1 3002 3002 20.871 5.024 1 2132300 + 19213 13679 12546 12550 19167 19167 -0.011891367022826671 HHHPSELV 8 Unmodified _HHHPSELV_ 0 0 0 REV__DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant REV__DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7426452636719 2 478.240858 954.467164 -0.38541 -0.00018432 0.22269 0.0001065 -0.16272 -7.7819E-05 478.2408660134969 18.423 0.27971 17.151 17.031 17.31 -1.2722 13 7 3 0 0 0 0.53444 1 2763 2763 26.341 1.6674 1 1655500 + 19214 13679 12546 12550 19168 19168 -0.011891367022826671 HHKRIFSKGC 10 Unmodified _HHKRIFSKGC_ 0 0 0 REV__ENSG00000196453|ENST00000247930|ZNF777 REV__ENSG00000196453|ENST00000247930|ZNF777 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 606.8291625976562 2 606.824566 1211.63458 NaN NaN NaN NaN NaN NaN NaN 9.3219 1 9.3219 8.8219 9.8219 0 0 0 0 0.22588 1 1066 1066 0.45834 0 1 + 19215 19246 12547 12551 19169 19169 0.03722807570807163 HHKSACIC 8 Unmodified _HHKSACIC_ 0 0 0 REV__ENST00000227525.7_1_11:60689885-60689972:+|nuORF REV__ENST00000227525.7_1_11:60689885-60689972:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 300.138427734375 3 300.138919 897.394927 NaN NaN NaN NaN NaN NaN NaN 110.91 1 110.91 110.41 111.41 0 0 0 0 0.21486 1 21815 21815 0.45834 0 1 + 19216 20052 12548 12552 19170 19170 -0.05787510371874305 HHLAPWPA 8 Unmodified _HHLAPWPA_ 0 0 0 ENST00000528910.5_2_11:77900026-77909080:+|nuORF ENST00000528910.5_2_11:77900026-77909080:+|nuORF ENST00000528910.5_2_11:77900026-77909080:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.16445 927.471521 NaN NaN NaN NaN NaN NaN NaN 125.12 1 120.52 120.02 121.02 -4.5984 0 0 0 0.23899 1 24670 24670 1.3295 0.36726 1 19217 10943 12549 12553 19171 19171 0.004883725112676984 HHLAPWPA 8 Unmodified _HHLAPWPA_ 0 0 0 ENST00000528910.5_2_11:77900026-77909080:+|nuORF ENST00000528910.5_2_11:77900026-77909080:+|nuORF ENST00000528910.5_2_11:77900026-77909080:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1644592285156 3 310.16445 927.471521 NaN NaN NaN NaN NaN NaN NaN 90.738 1 86.693 86.193 87.193 -4.0443 0 0 0 0.23899 1 17285 17285 1.3295 0 1 19218 10943 12549 12553 19172 19172 0.004883725112676984 HHLAPWPA 8 Unmodified _HHLAPWPA_ 0 0 0 ENST00000528910.5_2_11:77900026-77909080:+|nuORF ENST00000528910.5_2_11:77900026-77909080:+|nuORF ENST00000528910.5_2_11:77900026-77909080:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647644042969 3 310.16445 927.471521 NaN NaN NaN NaN NaN NaN NaN 102.67 1 98.65 98.15 99.15 -4.0212 0 0 0 0.23899 1 19735 19735 1.3295 1.3262 1 19219 10943 12549 12553 19173 19173 0.004883725112676984 HHLAPWPA 8 Unmodified _HHLAPWPA_ 0 0 0 ENST00000528910.5_2_11:77900026-77909080:+|nuORF ENST00000528910.5_2_11:77900026-77909080:+|nuORF ENST00000528910.5_2_11:77900026-77909080:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650695800781 3 310.16445 927.471521 NaN NaN NaN NaN NaN NaN NaN 125.06 1 120.41 119.91 120.91 -4.6495 0 0 0 0.23899 1 24060 24060 1.3295 0.36726 1 19220 10943 12549 12553 19174 19174 0.004883725112676984 HHLAPWPA 8 Unmodified _HHLAPWPA_ 0 0 0 ENST00000528910.5_2_11:77900026-77909080:+|nuORF ENST00000528910.5_2_11:77900026-77909080:+|nuORF ENST00000528910.5_2_11:77900026-77909080:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1653137207031 3 310.16445 927.471521 NaN NaN NaN NaN NaN NaN NaN 143.76 1 138.87 138.37 139.37 -4.8982 0 0 0 0.23899 1 27749 27749 1.3295 1.3295 1 19221 10943 12549 12553 19175 19175 0.004883725112676984 HHLKATKDE 9 Unmodified _HHLKATKDE_ 0 0 0 REV__ENSG00000176177|ENST00000325157|ENTHD1 REV__ENSG00000176177|ENST00000325157|ENTHD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.19952392578125 3 360.192845 1077.55671 0.21519 7.751E-05 0.18401 6.6279E-05 0.3992 0.00014379 360.19285995720935 64.718 0.5522 61.26 61.057 61.609 -3.4581 36 15 3 0 0 0 0.65153 1 12124 12124 9.544 0.79857 1 3018900 + 19222 18499 12550 12554 19176 19176 0.021030731864129848 HHNPGEET 8 Unmodified _HHNPGEET_ 0 0 0 ALPL|p.G221Vfs*56|1|0.47|ENSG00000162551|chr1:21568112-21568112|G/-|frameshift_variant;nc|ENSG00000162551|P05186-3|ALPL;ENSG00000162551|ENST00000374840|ALPL ALPL|p.G221Vfs*56|1|0.47|ENSG00000162551|chr1:21568112-21568112|G/-|frameshift_variant ALPL|p.G221Vfs*56|1|0.47|ENSG00000162551|chr1:21568112-21568112|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.16497802734375 3 307.466746 919.378408 -0.35968 -0.00011059 0.48867 0.00015025 0.129 3.9662E-05 307.466919721296 114.13 0.52934 109.65 109.34 109.86 -4.4726 21 14 2 0 0 0 1.0271 1 22457 22457 0 0 1 677860 19223 126 12551 12555 19177 19177 -0.08450596732609483 HHNPGEET 8 Unmodified _HHNPGEET_ 0 0 0 ALPL|p.G221Vfs*56|1|0.47|ENSG00000162551|chr1:21568112-21568112|G/-|frameshift_variant;nc|ENSG00000162551|P05186-3|ALPL;ENSG00000162551|ENST00000374840|ALPL ALPL|p.G221Vfs*56|1|0.47|ENSG00000162551|chr1:21568112-21568112|G/-|frameshift_variant ALPL|p.G221Vfs*56|1|0.47|ENSG00000162551|chr1:21568112-21568112|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 307.466746 919.378408 0.13321 4.0956E-05 0.17972 5.5258E-05 0.31293 9.6214E-05 307.4667144998306 114.08 0.69324 109.53 109.32 110.01 -4.555 -0.084546 -0.00016699 NaN 0 25 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1262800 19224 126 12551 12555 -0.08450596732609483 HHNPGEET 8 Unmodified _HHNPGEET_ 0 0 0 ALPL|p.G221Vfs*56|1|0.47|ENSG00000162551|chr1:21568112-21568112|G/-|frameshift_variant;nc|ENSG00000162551|P05186-3|ALPL;ENSG00000162551|ENST00000374840|ALPL ALPL|p.G221Vfs*56|1|0.47|ENSG00000162551|chr1:21568112-21568112|G/-|frameshift_variant ALPL|p.G221Vfs*56|1|0.47|ENSG00000162551|chr1:21568112-21568112|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 307.466746 919.378408 -0.1366 -4.2001E-05 0.4902 0.00015072 0.3536 0.00010872 307.46688134779265 113.97 0.55084 109.66 109.37 109.92 -4.3136 0.04544 0.0001194 NaN 0 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 781500 19225 126 12551 12555 -0.08450596732609483 HHPHSRAG 8 Unmodified _HHPHSRAG_ 0 0 0 DDX55|p.S81Efs*48|1|0.36|ENSG00000111364|chr12:123606146-123606147|-/A|frameshift_variant DDX55|p.S81Efs*48|1|0.36|ENSG00000111364|chr12:123606146-123606147|-/A|frameshift_variant DDX55|p.S81Efs*48|1|0.36|ENSG00000111364|chr12:123606146-123606147|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 300.15228271484375 3 300.151203 897.431781 NaN NaN NaN NaN NaN NaN NaN 110.83 1 110.83 110.33 111.33 0 0 0 0 0.21486 1 21798 21798 0.45834 0 1 19226 805 12552 12556 19178 19178 -0.021037544394403085 HHQLLQVG 8 Unmodified _HHQLLQVG_ 0 0 0 LIN54|p.A248Vfs*40|1|0.07|ENSG00000189308|chr4:82978948-82978949|-/TGTAA|frameshift_variant LIN54|p.A248Vfs*40|1|0.07|ENSG00000189308|chr4:82978948-82978949|-/TGTAA|frameshift_variant LIN54|p.A248Vfs*40|1|0.07|ENSG00000189308|chr4:82978948-82978949|-/TGTAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.17584228515625 3 311.175126 930.503549 NaN NaN NaN NaN NaN NaN NaN 90.302 1 90.302 89.802 90.802 0 0 0 0 0.21486 1 17639 17639 1.8442 0.19162 1 19227 12077 12553 12557 19179 19179 0.03551740194427566 HHQMKREL 8 Unmodified _HHQMKREL_ 0 0 0 REV__ENSG00000148513|ENST00000361713|ANKRD30A REV__ENSG00000148513|ENST00000361713|ANKRD30A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.1114807128906 3 360.19067 1077.55018 NaN NaN NaN NaN NaN NaN NaN 102.18 1 102.18 101.68 102.68 0 0 0 0 0.21486 1 20067 20067 3.9444 0.3479 1 + 19228 16980 12554 12558 19180 19180 0.014508567540588047 HHSHQRRHRRY 11 Unmodified _HHSHQRRHRRY_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4096069335938 2 785.409572 1568.80459 NaN NaN NaN NaN NaN NaN NaN 109.91 1 105.53 105.03 106.03 -4.3776 0 0 0 0.23698 1 21660 21660 0.35063 0 1 19229 6436 12555 12559 19181 19181 0.042940596174275925 HHSHQRRHRRY 11 Unmodified _HHSHQRRHRRY_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4095458984375 2 785.409572 1568.80459 NaN NaN NaN NaN NaN NaN NaN 34.27 1 32.123 31.623 32.623 -2.1468 0 0 0 0.23698 1 6002 6002 0 0 1 19230 6436 12555 12559 19182 19182 0.042940596174275925 HHSQQYYQQIH 11 Unmodified _HHSQQYYQQIH_ 0 0 0 ENSG00000008197|ENST00000008391|TFAP2D ENSG00000008197|ENST00000008391|TFAP2D ENSG00000008197|ENST00000008391|TFAP2D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2659912109375 3 490.22873 1467.66436 NaN NaN NaN NaN NaN NaN NaN 92.526 1 88.718 88.218 89.218 -3.8083 0 0 0 0.22632 1 17730 17730 0.172 0.14579 1 19231 1039 12556 12560 19183 19183 -0.05076581950152104 HHTCYTAS 8 Unmodified _HHTCYTAS_ 0 0 0 nc|ENSG00000188803|Q6ZSJ9|SHISA6;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;ENSG00000188803|ENST00000441885|SHISA6 nc|ENSG00000188803|Q6ZSJ9|SHISA6 nc|ENSG00000188803|Q6ZSJ9|SHISA6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2307434082031 2 460.189977 918.365401 NaN NaN NaN NaN NaN NaN NaN 33.611 1 33.611 33.111 34.111 0 0 0 0 0.21486 1 6139 6139 9.3474 0 1 19232 7196 12557 12561 19184 19184 -0.097047511163737 HHTPPDLG 8 Unmodified _HHTPPDLG_ 0 0 0 REV__nc|ENSG00000154222|Q5T0F9-4|CC2D1B REV__nc|ENSG00000154222|Q5T0F9-4|CC2D1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2160949707031 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 176.01 1 171.11 170.61 171.61 -4.9008 0 0 0 0.21486 1 35086 35086 0.79363 0 1 + 19233 13276 12558 12562 19185 19185 -0.027245144849416647 HHVVTLIL 8 Unmodified _HHVVTLIL_ 0 0 0 nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1 nc|ENSG00000223802|P27544-2|CERS1 nc|ENSG00000223802|P27544-2|CERS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1958312988281 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 100.17 1 96.009 95.509 96.509 -4.1594 0 0 0 0.21486 1 19683 19683 0.45834 0 1 19234 7779 12559 12563 19186 19186 0.0970267189372862 HHVVTLIL 8 Unmodified _HHVVTLIL_ 0 0 0 nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1 nc|ENSG00000223802|P27544-2|CERS1 nc|ENSG00000223802|P27544-2|CERS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2320251464844 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 111.2 1 106.78 106.28 107.28 -4.4231 0 0 0 0.21486 1 21908 21908 0.45834 0 1 19235 7779 12559 12563 19187 19187 0.0970267189372862 HHYCKCYK 8 Unmodified _HHYCKCYK_ 0 0 0 REV__ENST00000559471.5_1_15:49327615-49327825:-|nuORF REV__ENST00000559471.5_1_15:49327615-49327825:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2719116210938 2 541.238947 1080.46334 NaN NaN NaN NaN NaN NaN NaN 152.08 1 146.9 146.4 147.4 -5.1759 0 0 0 0.23749 1 29473 29473 0.12286 0.049601 1 + 19236 23032 12560 12564 19188 19188 -0.07367265792026956 HHYIPRFNIWY 11 Unmodified _HHYIPRFNIWY_ 0 0 0 REV__ENST00000443112.6_1_1:224606097-224607300:-|nuORF REV__ENST00000443112.6_1_1:224606097-224607300:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7088928222656 4 387.199202 1544.7677 -0.048041 -1.8601E-05 0.65635 0.00025414 0.60831 0.00023554 387.1995680562459 25.216 0.34472 25.216 25.046 25.391 0 12 9 2 0 0 0 0.96224 1 4376 4376 0.50596 0 1 609740 + 19237 21728 12561 12565 19189 19189 0.017109502283346956 HIADLHLDPDY 11 Unmodified _HIADLHLDPDY_ 0 0 0 ENSG00000130768|ENST00000373894|SMPDL3B;nc|ENSG00000130768|Q92485-2|SMPDL3B;SMPDL3B|p.G173Vfs*31|1|0.33|ENSG00000130768|chr1:27953352-27953352|A/-|frameshift_variant ENSG00000130768|ENST00000373894|SMPDL3B ENSG00000130768|ENST00000373894|SMPDL3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2147521972656 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 158.64 1 153.84 153.34 154.34 -4.7952 0 0 0 0.23689 1 31548 31548 2.8433 0.75728 1 19238 3635 12562 12566 19190 19190 -0.026887096787959308 HIAETLMGLLH 11 Unmodified _HIAETLMGLLH_ 0 0 0 REV__tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1 REV__tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 412.24639892578125 3 412.225269 1233.65398 NaN NaN NaN NaN NaN NaN NaN 50.08 1 47.073 46.573 47.573 -3.0068 0 0 0 0.23199 1 9196 9196 3.0723 0 1 + 19239 24958 12563 12567 19191 19191 0.04649719071085201 HIARRPQS 8 Unmodified _HIARRPQS_ 0 0 0 REV__ENST00000565644.5_1_16:87863759-87863915:-|nuORF REV__ENST00000565644.5_1_16:87863759-87863915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.1683044433594 3 322.186025 963.536246 NaN NaN NaN NaN NaN NaN NaN 7.746 1 7.0669 6.5669 7.5669 -0.67913 0 0 0 0.21486 1 736 736 0.45834 0 1 + 19240 23112 12564 12568 19192 19192 0.05301947317275335 HIARRPQS 8 Unmodified _HIARRPQS_ 0 0 0 REV__ENST00000565644.5_1_16:87863759-87863915:-|nuORF REV__ENST00000565644.5_1_16:87863759-87863915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.2820739746094 3 322.186025 963.536246 NaN NaN NaN NaN NaN NaN NaN 11.813 1 10.909 10.409 11.409 -0.90401 0 0 0 0.21486 1 1594 1594 0.45834 0 1 + 19241 23112 12564 12568 19193 19193 0.05301947317275335 HICEDEDW 8 Unmodified _HICEDEDW_ 0 0 0 REV__FBN2|p.D2138Tfs*111|3|0.3|ENSG00000138829|chr5:128290765-128290765|C/-|frameshift_variant REV__FBN2|p.D2138Tfs*111|3|0.3|ENSG00000138829|chr5:128290765-128290765|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6962890625 2 523.697832 1045.38111 NaN NaN NaN NaN NaN NaN NaN 50.854 1 47.802 47.302 48.302 -3.0517 0 0 0 0.23711 1 9356 9356 0.0082765 0.004896 1 + 19242 16497 12565 12569 19194 19194 -0.13976509389976854 HIDSSVTGV 9 Unmodified _HIDSSVTGV_ 0 0 0 ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1;N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant;N4BP1|p.I719Mfs*8|1|0.17|ENSG00000102921|chr16:48548066-48548075|ATTTGTCACA/-|frameshift_variant ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENST00000564124.5_1_16:48580029-48653834:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2348937988281 2 457.732532 913.45051 -0.089825 -4.1116E-05 0.38577 0.00017658 0.29595 0.00013546 457.7326012904264 44.415 0.48934 41.668 41.361 41.85 -2.7475 23 13 2 0 0 0 0.060164 1 8063 8063 67.344 23.486 1 1186900 19243 2154 12566 12570 19195 19195 -0.009676823788936417 HIDVGGHMY 9 Oxidation (M) _HIDVGGHM(Oxidation (M))Y_ HIDVGGHM(1)Y HIDVGGHM(97)Y 0 0 1 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000134504|Q719H9|KCTD1;KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.270263671875 2 522.732009 1043.44946 0.40768 0.00021311 -0.64729 -0.00033836 -0.23961 -0.00012525 522.7317354862237 49.903 0.99162 49.903 49.512 50.504 0 67 28 4 0 0 0 0.0277 1 9461 9461 97.075 70.733 1 33603000 19244 4982 12567 12571 19196 19196 78 -0.0705222001945458 HIDVGGHMY 9 Oxidation (M) _HIDVGGHM(Oxidation (M))Y_ HIDVGGHM(1)Y HIDVGGHM(100)Y 0 0 1 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000134504|Q719H9|KCTD1;KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2571411132812 2 522.732009 1043.44946 0.54036 0.00028246 -0.70138 -0.00036663 -0.16102 -8.417E-05 522.7316776556307 47.661 1.1925 47.661 47.226 48.418 0 88 33 4 0 0 0 0.022414 1 9002 9002 101.72 67.535 1 25348000 19245 4982 12567 12571 19197 19197 78 -0.0705222001945458 HIDVGGHMY 9 Oxidation (M) _HIDVGGHM(Oxidation (M))Y_ HIDVGGHM(1)Y HIDVGGHM(110)Y 0 0 1 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000134504|Q719H9|KCTD1;KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2576904296875 2 522.732009 1043.44946 -0.33966 -0.00017755 0.16091 8.4111E-05 -0.17876 -9.3442E-05 522.7322065813551 50.304 1.0588 47.423 46.905 47.964 -2.8811 75 29 4 0 0 0 0.022414 1 9538 9538 114.94 86.771 1 28102000 19246 4982 12567 12571 19198 19198 78 -0.0705222001945458 HIDVGGHMY 9 Oxidation (M) _HIDVGGHM(Oxidation (M))Y_ HIDVGGHM(1)Y HIDVGGHM(78)Y 0 0 1 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000134504|Q719H9|KCTD1;KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6969604492188 2 522.732009 1043.44946 -0.60946 -0.00031858 0.40629 0.00021238 -0.20316 -0.0001062 522.7324089054819 50.625 1.7895 47.58 46.822 48.611 -3.0453 104 51 4 0 0 0 0.035055 1 9311 9311 77.984 52.585 1 19384000 19247 4982 12567 12571 19199 19199 78 -0.0705222001945458 HIDVGGHMY 9 Oxidation (M) _HIDVGGHM(Oxidation (M))Y_ HIDVGGHM(1)Y HIDVGGHM(110)Y 0 0 1 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000134504|Q719H9|KCTD1;KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2777099609375 2 522.732009 1043.44946 -0.60177 -0.00031456 0.49603 0.00025929 -0.10574 -5.5271E-05 522.7323428907405 52.901 1.0221 49.814 49.479 50.501 -3.0876 67 28 4 0 0 0 0.029432 1 9695 9695 109.63 81.456 1 27841000 19248 4982 12567 12571 19200 19200 78 -0.0705222001945458 HIDVGGHMY 9 Oxidation (M) _HIDVGGHM(Oxidation (M))Y_ HIDVGGHM(1)Y HIDVGGHM(60)Y 0 0 1 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000134504|Q719H9|KCTD1;KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6846923828125 2 522.732009 1043.44946 -0.016035 -8.3822E-06 -0.16122 -8.4277E-05 -0.17726 -9.2659E-05 522.7320060568532 50.52 1.5523 47.468 46.828 48.38 -3.0517 97 44 4 0 0 0 0.085258 1 9347 9347 60.39 41.133 1 23728000 19249 4982 12567 12571 19201 19201 78 -0.0705222001945458 HIDVGGHMY 9 Oxidation (M) _HIDVGGHM(Oxidation (M))Y_ HIDVGGHM(1)Y HIDVGGHM(97)Y 0 0 1 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000134504|Q719H9|KCTD1;KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2777709960938 2 522.732009 1043.44946 0.001726 9.0223E-07 -0.22031 -0.00011516 -0.21858 -0.00011426 522.731968884926 52.872 1.2105 49.777 49.164 50.374 -3.0954 87 34 4 0 0 0 0.029432 1 9722 9722 97.075 73.926 1 30839000 19250 4982 12567 12571 19202 19202 78 -0.0705222001945458 HIDWKKED 8 Unmodified _HIDWKKED_ 0 0 0 ENST00000571080.1_1_17:881623-881719:-|nuORF ENST00000571080.1_1_17:881623-881719:-|nuORF ENST00000571080.1_1_17:881623-881719:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 358.0665283203125 3 357.513696 1069.51926 -0.27272 -9.75E-05 0.29123 0.00010412 0.018518 6.6205E-06 357.51373240873187 66.01 0.68748 62.963 62.611 63.299 -3.047 59 19 4 0 0 0 0.74818 1 12748 12748 7.2892 0.56607 1 14913000 19251 11419 12568 12572 19203 19203 -0.012720180792030078 HIDWKKED 8 Unmodified _HIDWKKED_ 0 0 0 ENST00000571080.1_1_17:881623-881719:-|nuORF ENST00000571080.1_1_17:881623-881719:-|nuORF ENST00000571080.1_1_17:881623-881719:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.513696 1069.51926 -0.37483 -0.00013401 0.49094 0.00017552 0.11611 4.1512E-05 357.5138074837409 66.16 0.7345 62.877 62.511 63.246 -3.2832 -0.024233 0.00027551 NaN 7.2892 59 20 4 NaN NaN NaN NaN 0 NaN NaN 0 15906000 19252 11419 12568 12572 -0.012720180792030078 HIEVQGDPVA 10 Unmodified _HIEVQGDPVA_ 0 0 0 ENST00000308020.5_1_11:490050-490476:+|nuORF ENST00000308020.5_1_11:490050-490476:+|nuORF ENST00000308020.5_1_11:490050-490476:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.273193359375 2 532.772188 1063.52982 0.25277 0.00013467 -0.80922 -0.00043113 -0.55646 -0.00029646 532.7717032533956 50.764 0.48597 50.764 50.536 51.022 0 26 13 3 0 0 0 0.26497 1 9608 9608 39.95 9.7249 1 1520800 19253 8620 12569 12573 19204 19204 0.0005996457523451681 HIEVQGDPVA 10 Unmodified _HIEVQGDPVA_ 0 0 0 ENST00000308020.5_1_11:490050-490476:+|nuORF ENST00000308020.5_1_11:490050-490476:+|nuORF ENST00000308020.5_1_11:490050-490476:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.273193359375 2 532.772188 1063.52982 0.0092102 4.9069E-06 -0.37625 -0.00020046 -0.36704 -0.00019555 532.7719570122672 53.753 0.38153 50.658 50.477 50.859 -3.0954 17 10 2 0 0 0 0.51199 1 9964 9964 24.021 0.23079 1 1313000 19254 8620 12569 12573 19205 19205 0.0005996457523451681 HIFSKFSP 8 Unmodified _HIFSKFSP_ 0 0 0 ENST00000467491.5_1_10:6267193-6273265:+|nuORF ENST00000467491.5_1_10:6267193-6273265:+|nuORF ENST00000467491.5_1_10:6267193-6273265:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.774658203125 2 481.758352 961.502152 NaN NaN NaN NaN NaN NaN NaN 75.038 1 71.674 71.174 72.174 -3.3643 0 0 0 0.19492 1 14645 14645 26.341 5.8877 1 19255 10151 12570 12574 19206 19206 0.019861061056758444 HIGCFHGC 8 Unmodified _HIGCFHGC_ 0 0 0 REV__ENST00000518820.1_1_8:143599542-143620974:+|nuORF REV__ENST00000518820.1_1_8:143599542-143620974:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2295837402344 2 437.178358 872.342163 NaN NaN NaN NaN NaN NaN NaN 58.701 1 55.449 54.949 55.949 -3.2517 0 0 0 0.23711 1 10912 10912 0.063987 0 1 + 19256 22610 12571 12575 19207 19207 -0.09911468434677317 HIGDILPVV 9 Unmodified _HIGDILPVV_ 0 0 0 HERC2|p.A1107V|1|0.19|ENSG00000128731|chr15:28246813-28246813|G/A|missense_variant HERC2|p.A1107V|1|0.19|ENSG00000128731|chr15:28246813-28246813|G/A|missense_variant HERC2|p.A1107V|1|0.19|ENSG00000128731|chr15:28246813-28246813|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7868957519531 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 118.03 1 118.03 117.53 118.53 0 0 0 0 0.079869 1 23248 23248 42.095 0 1 19257 11876 12572 12576 19208 19208 0.07734948311247081 HIHCIDRW 8 Unmodified _HIHCIDRW_ 0 0 0 nc|ENSG00000127870|Q9Y252-2|RNF6;ENSG00000127870|ENST00000381588|RNF6 nc|ENSG00000127870|Q9Y252-2|RNF6 nc|ENSG00000127870|Q9Y252-2|RNF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2047424316406 3 360.511632 1078.51307 -0.45953 -0.00016567 -0.75633 -0.00027267 -1.2159 -0.00043833 360.5112831338382 37.301 0.69008 34.963 34.774 35.464 -2.3375 31 19 2 0 0 0 1.0262 1 6603 6603 4.3292 2.6766 1 526900 19258 3494 12573 12577 19209 19209 -0.02304814791705212 HIIAHVENYIY 11 Unmodified _HIIAHVENYIY_ 0 0 0 ENST00000489813.1_1_3:38537858-38539466:+|nuORF ENST00000489813.1_1_3:38537858-38539466:+|nuORF ENST00000489813.1_1_3:38537858-38539466:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2386779785156 3 457.906705 1370.69829 -0.57902 -0.00026514 -2.9079 -0.0013316 -3.4869 -0.0015967 457.905313644331 15.962 0.21251 14.746 14.585 14.797 -1.2159 7 5 2 0 0 0 0.80429 1 2476 2476 3.0723 0.63748 1 300410 19259 10504 12574 12578 19210 19210 0.027764464889060037 HIIIVIIIGIV 11 Unmodified _HIIIVIIIGIV_ 0 0 0 REV__SLC1A3|p.V319Efs*4|1|0.04|ENSG00000079215|chr5:36679719-36679720|-/AGAAATTT|frameshift_variant REV__SLC1A3|p.V319Efs*4|1|0.04|ENSG00000079215|chr5:36679719-36679720|-/AGAAATTT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2908325195312 2 601.915384 1201.81622 0.34742 0.00020912 -3.4393 -0.0020702 -3.0919 -0.0018611 601.9136254936772 140.92 0.16882 136.05 135.91 136.08 -4.8678 8 4 3 0 0 0 0.96156 1 27184 27184 3.5965 2.1146 1 3515700 + 19260 14392 12575 12579 19211 19211 0.22338050815505994 HIILYVRQIWE 11 Unmodified _HIILYVRQIWE_ 0 0 0 REV__KLHDC2|p.F310Rfs*26|1|0.05|ENSG00000165516|chr14:49780745-49780746|-/GAGAGTAT|frameshift_variant REV__KLHDC2|p.F310Rfs*26|1|0.05|ENSG00000165516|chr14:49780745-49780746|-/GAGAGTAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.265869140625 3 490.613633 1468.81907 NaN NaN NaN NaN NaN NaN NaN 162.72 1 157.93 157.43 158.43 -4.7898 0 0 0 0.22632 1 32388 32388 1.4551 0 1 + 19261 23721 12576 12580 19212 19212 0.10341274202369277 HIIRQQCDYEY 11 Unmodified _HIIRQQCDYEY_ 0 0 0 REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26708984375 3 489.894359 1466.66125 NaN NaN NaN NaN NaN NaN NaN 91.187 1 91.187 90.687 91.687 0 0 0 0 0.2366 1 17816 17816 3.0723 0.22898 1 + 19262 21450 12577 12581 19213 19213 -0.053415931191693744 HIKEELEKGPL 11 Unmodified _HIKEELEKGPL_ 0 0 0 REV__CEP152|p.Q965Lfs*16|1|0.02|ENSG00000103995|chr15:48756354-48756355|-/ACAAACTTGTCTA|frameshift_variant REV__CEP152|p.Q965Lfs*16|1|0.02|ENSG00000103995|chr15:48756354-48756355|-/ACAAACTTGTCTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 646.9525146484375 2 646.864077 1291.7136 NaN NaN NaN NaN NaN NaN NaN 167.46 1 162.67 162.17 163.17 -4.7898 0 0 0 0.23087 1 33772 33772 7.609 1.8771 1 + 19263 13375 12578 12582 19214 19214 0.07941313286096374 HILNGQVFAS 10 Unmodified _HILNGQVFAS_ 0 0 0 nc|ENSG00000173264|Q96N19-3|GPR137;ENSG00000173264|ENST00000438980|GPR137;nc|ENSG00000173264|Q96N19|GPR137;nc|ENSG00000173264|Q96N19-4|GPR137 nc|ENSG00000173264|Q96N19-3|GPR137 nc|ENSG00000173264|Q96N19-3|GPR137 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7914428710938 2 543.290548 1084.56654 0.67096 0.00036453 -0.35223 -0.00019136 0.31874 0.00017317 543.2902906983479 81.061 0.63638 81.061 80.733 81.369 0 35 17 3 0 0 0 0.53552 1 15831 15831 22.736 4.3632 1 6241500 19264 6282 12579 12583 19215 19215 0.027642611918054172 HILNGQVFAS 10 Unmodified _HILNGQVFAS_ 0 0 0 nc|ENSG00000173264|Q96N19-3|GPR137;ENSG00000173264|ENST00000438980|GPR137;nc|ENSG00000173264|Q96N19|GPR137;nc|ENSG00000173264|Q96N19-4|GPR137 nc|ENSG00000173264|Q96N19-3|GPR137 nc|ENSG00000173264|Q96N19-3|GPR137 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7918090820312 2 543.290548 1084.56654 0.1923 0.00010447 -0.52543 -0.00028546 -0.33313 -0.00018099 543.290394175269 84.598 0.92778 80.934 80.573 81.501 -3.6641 55 26 3 0 0 0 0.53552 1 16579 16579 22.736 0.078198 1 6231700 19265 6282 12579 12583 19216 19216 0.027642611918054172 HILTLMSVAAR 11 Unmodified _HILTLMSVAAR_ 0 0 0 ENSG00000134917|ENST00000257359|ADAMTS8 ENSG00000134917|ENST00000257359|ADAMTS8 ENSG00000134917|ENST00000257359|ADAMTS8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 606.3497924804688 2 606.350083 1210.68561 NaN NaN NaN NaN NaN NaN NaN 169.11 1 164.32 163.82 164.82 -4.7898 0 0 0 0.224 1 34231 34231 13.042 1.4022 1 19266 3885 12580 12584 19217 19217 0.088697118249911 HIPGAGSL 8 Unmodified _HIPGAGSL_ 0 0 0 REV__ENSG00000229637|ENST00000422730|PRAC2 REV__ENSG00000229637|ENST00000422730|PRAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.19525146484375 2 376.208495 750.402438 -0.19717 -7.4176E-05 0.30956 0.00011646 0.11239 4.2282E-05 376.20852365825573 79.689 0.67044 76.179 75.873 76.543 -3.5102 41 18 3 0 0 0 0.72861 1 15528 15528 10.183 0 1 3731700 + 19267 19742 12581 12585 19218 19218 0.017252884917297706 HIPGAGSL 8 Unmodified _HIPGAGSL_ 0 0 0 REV__ENSG00000229637|ENST00000422730|PRAC2 REV__ENSG00000229637|ENST00000422730|PRAC2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 376.208495 750.402438 -0.19717 -7.4176E-05 0.30956 0.00011646 0.11239 4.2282E-05 376.20852365825573 79.689 0.67044 76.179 75.873 76.543 -3.5102 0.00045523 -2.2917E-05 NaN 10.183 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3731700 + 19268 19742 12581 12585 0.017252884917297706 HIPGAGSL 8 Unmodified _HIPGAGSL_ 0 0 0 REV__ENSG00000229637|ENST00000422730|PRAC2 REV__ENSG00000229637|ENST00000422730|PRAC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 376.208495 750.402438 -0.046986 -1.7677E-05 -0.016881 -6.3508E-06 -0.063867 -2.4027E-05 376.20841096765514 79.988 0.6341 76.183 75.932 76.566 -3.8048 0.0044721 -0.00026853 NaN 10.183 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2037300 + 19269 19742 12581 12585 0.017252884917297706 HIPGAGSL 8 Unmodified _HIPGAGSL_ 0 0 0 REV__ENSG00000229637|ENST00000422730|PRAC2 REV__ENSG00000229637|ENST00000422730|PRAC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 376.208495 750.402438 -0.81504 -0.00030663 0.77182 0.00029036 -0.043226 -1.6262E-05 376.2087486067064 79.85 0.69024 76.174 75.904 76.594 -3.676 -0.0049274 0.0003249 NaN 10.183 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2497000 + 19270 19742 12581 12585 0.017252884917297706 HIPSVSGPSV 10 Unmodified _HIPSVSGPSV_ 0 0 0 REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2 REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2547912597656 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 88.386 1 88.386 87.886 88.886 0 0 0 0 0.21574 1 17252 17252 25.399 2.2509 1 + 19271 19410 12582 12586 19219 19219 0.023328834091557837 HIPTQEDEI 9 Unmodified _HIPTQEDEI_ 0 0 0 REV__ENSG00000100526|ENST00000335183|CDKN3 REV__ENSG00000100526|ENST00000335183|CDKN3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2608642578125 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 178.39 1 173.52 173.02 174.02 -4.8686 0 0 0 0.23508 1 35515 35515 3.5965 0.31518 1 + 19272 14719 12583 12587 19220 19220 -0.028280455243020697 HIQLVKKRG 9 Unmodified _HIQLVKKRG_ 0 0 0 ENSG00000131459|ENST00000253778|GFPT2 ENSG00000131459|ENST00000253778|GFPT2 ENSG00000131459|ENST00000253778|GFPT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.19970703125 3 360.232975 1077.6771 NaN NaN NaN NaN NaN NaN NaN 47.961 1 45.019 44.519 45.519 -2.9421 0 0 0 0.23508 1 8751 8751 4.897 2.1618 1 19273 3677 12584 12588 19221 19221 0.14136525970684488 HIRHHEHL 8 Unmodified _HIRHHEHL_ 0 0 0 REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484 REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2130126953125 3 360.193291 1077.55804 -0.22702 -8.1773E-05 -0.7992 -0.00028786 -1.0262 -0.00036964 360.1929382813883 64.249 0.72876 61.251 60.91 61.639 -2.9975 45 20 3 0 0 0 0.72428 1 12388 12388 10.824 0.67336 1 3324600 + 19274 15876 12585 12589 19222 19222 0.022367520658463036 HIRIELIEE 9 Unmodified _HIRIELIEE_ 0 0 0 REV__PKD2|p.F568Lfs*16|1|0.33|ENSG00000118762|chr4:88052141-88052141|T/-|frameshift_variant REV__PKD2|p.F568Lfs*16|1|0.33|ENSG00000118762|chr4:88052141-88052141|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3255615234375 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 139.7 1 135.05 134.55 135.55 -4.6439 0 0 0 0.1963 1 27580 27580 0.40827 0 1 + 19275 15563 12586 12590 19223 19223 0.06533086051808823 HIRILGLK 8 Unmodified _HIRILGLK_ 0 0 0 PUS1|p.T320Qfs*72|1|0.08|ENSG00000177192|chr12:131941704-131941704|C/-|frameshift_variant;nc|ENSG00000177192|Q9Y606-2|PUS1;ENSG00000177192|ENST00000376649|PUS1 PUS1|p.T320Qfs*72|1|0.08|ENSG00000177192|chr12:131941704-131941704|C/-|frameshift_variant PUS1|p.T320Qfs*72|1|0.08|ENSG00000177192|chr12:131941704-131941704|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.2153015136719 3 317.215033 948.62327 NaN NaN NaN NaN NaN NaN NaN 72.762 1 69.134 68.634 69.634 -3.6275 0 0 0 0.21486 1 13745 13745 0.40072 0 1 19276 6500 12587 12591 19224 19224 0.1469035353899244 HIRILGLK 8 Unmodified _HIRILGLK_ 0 0 0 PUS1|p.T320Qfs*72|1|0.08|ENSG00000177192|chr12:131941704-131941704|C/-|frameshift_variant;nc|ENSG00000177192|Q9Y606-2|PUS1;ENSG00000177192|ENST00000376649|PUS1 PUS1|p.T320Qfs*72|1|0.08|ENSG00000177192|chr12:131941704-131941704|C/-|frameshift_variant PUS1|p.T320Qfs*72|1|0.08|ENSG00000177192|chr12:131941704-131941704|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.2218322753906 3 317.215033 948.62327 NaN NaN NaN NaN NaN NaN NaN 83.66 1 79.786 79.286 80.286 -3.8736 0 0 0 0.21486 1 15891 15891 0.40072 0 1 19277 6500 12587 12591 19225 19225 0.1469035353899244 HIRQHQLF 8 Unmodified _HIRQHQLF_ 0 0 0 REV__ENSG00000178187|ENST00000519564|ZNF454 REV__ENSG00000178187|ENST00000519564|ZNF454 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20172119140625 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 108.48 1 104.16 103.66 104.66 -4.32 0 0 0 0.21486 1 21376 21376 4.3292 0 1 + 19278 18592 12588 12592 19226 19226 0.047508068684237514 HIRQHQLF 8 Unmodified _HIRQHQLF_ 0 0 0 REV__ENSG00000178187|ENST00000519564|ZNF454 REV__ENSG00000178187|ENST00000519564|ZNF454 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016906738281 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 62.718 1 59.302 58.802 59.802 -3.4158 0 0 0 0.21486 1 11711 11711 7.2892 0 1 + 19279 18592 12588 12592 19227 19227 0.047508068684237514 HIRVVVKG 8 Unmodified _HIRVVVKG_ 0 0 0 nc|ENSG00000181991|P82912-3|MRPS11;nc|ENSG00000181991|P82912-2|MRPS11;ENSG00000181991|ENST00000325844|MRPS11 nc|ENSG00000181991|P82912-3|MRPS11 nc|ENSG00000181991|P82912-3|MRPS11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 303.1996154785156 3 303.199383 906.57632 NaN NaN NaN NaN NaN NaN NaN 103.72 1 99.498 98.998 99.998 -4.2183 0 0 0 0.21486 1 20392 20392 0.40072 0 1 19280 6756 12589 12593 19228 19228 0.11929493987861406 HISDINHY 8 Unmodified _HISDINHY_ 0 0 0 REV__L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|140|3|anti-sense REV__L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|140|3|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.99951171875 3 333.494524 997.461744 -0.33472 -0.00011163 0.25675 8.5626E-05 -0.077972 -2.6003E-05 333.49454189504866 47.508 0.69302 44.639 44.217 44.91 -2.869 24 19 2 0 0 0 1.0262 1 8906 8906 4.3292 0.38484 1 991390 + 19281 23782 12590 12594 19229 19229 -0.03708860284768889 HISLHATPL 9 Unmodified _HISLHATPL_ 0 0 0 REV__ENST00000320442.8_1_12:58014065-58016599:+|nuORF REV__ENST00000320442.8_1_12:58014065-58016599:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 330.0084533691406 3 330.190665 987.550165 NaN NaN NaN NaN NaN NaN NaN 141.36 1 136.71 136.21 137.21 -4.6493 0 0 0 0.23508 1 27922 27922 5.2969 0 1 + 19282 20544 12591 12595 19230 19230 0.05589180025708629 HISLNPLDA 9 Unmodified _HISLNPLDA_ 0 0 0 RNASE3|p.P48Lfs*31|1|0.18|ENSG00000169397|chr14:20891824-20891824|C/-|frameshift_variant RNASE3|p.P48Lfs*31|1|0.18|ENSG00000169397|chr14:20891824-20891824|C/-|frameshift_variant RNASE3|p.P48Lfs*31|1|0.18|ENSG00000169397|chr14:20891824-20891824|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2750244140625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 91.112 1 91.112 90.612 91.612 0 0 0 0 0.19721 1 17803 17803 24.021 0 1 19283 25613 12592 12596 19231 19231 0.02332883409144415 HISYREEV 8 Unmodified _HISYREEV_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 345.1972351074219 3 344.841813 1031.50361 -0.76562 -0.00026402 -0.012205 -4.2087E-06 -0.77783 -0.00026823 344.84177389458847 48.988 0.6538 45.981 45.622 46.276 -3.0068 32 18 2 0 0 0 1.0243 1 8981 8981 1.6526 0 1 887440 19284 6767 12593 12597 19232 19232 -0.010883045962373217 HIVAFSPC 8 Unmodified _HIVAFSPC_ 0 0 0 REV__ENST00000354416.7_1_X:118752684-118752777:-|nuORF REV__ENST00000354416.7_1_X:118752684-118752777:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2166748046875 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 113.67 1 113.67 113.17 114.17 0 0 0 0 0.21486 1 22352 22352 6.3541 0.59368 1 + 19285 20778 12594 12598 19233 19233 -0.01985498208887293 HIVLCVLSN 9 Unmodified _HIVLCVLSN_ 0 0 0 REV__ENSG00000183150|ENST00000651487|GPR19 REV__ENSG00000183150|ENST00000651487|GPR19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.99884033203125 3 333.188155 996.542637 -0.6482 -0.00021597 0.74606 0.00024858 0.097857 3.2605E-05 333.1882786426363 56.914 0.52592 53.738 53.545 54.071 -3.1761 24 14 2 0 0 0 0.8799 1 10596 10596 4.897 0 1 989970 + 19286 18821 12595 12599 19234 19234 0.04422704433795843 HIVLCVLSN 9 Unmodified _HIVLCVLSN_ 0 0 0 REV__ENSG00000183150|ENST00000651487|GPR19 REV__ENSG00000183150|ENST00000651487|GPR19 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 333.188155 996.542637 -0.45462 -0.00015147 0.40195 0.00013393 -0.052664 -1.7547E-05 333.1882604936645 54.062 0.53925 54.062 53.779 54.318 0 0.26132 8.8501E-05 NaN 4.897 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 805670 + 19287 18821 12595 12599 0.04422704433795843 HIVLCVLSN 9 Unmodified _HIVLCVLSN_ 0 0 0 REV__ENSG00000183150|ENST00000651487|GPR19 REV__ENSG00000183150|ENST00000651487|GPR19 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 333.188155 996.542637 -0.42277 -0.00014086 0.30086 0.00010024 -0.12191 -4.062E-05 333.1882551429803 56.601 0.44639 53.707 53.475 53.922 -2.8944 -0.093509 -1.2546E-05 NaN 4.897 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1449100 + 19288 18821 12595 12599 0.04422704433795843 HIVVDGELSR 10 Unmodified _HIVVDGELSR_ 0 0 0 ENST00000458074.1_1_X:150394703-150395165:-|nuORF ENST00000458074.1_1_X:150394703-150395165:-|nuORF ENST00000458074.1_1_X:150394703-150395165:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2183532714844 3 375.540134 1123.59857 -0.23976 -9.0039E-05 0.14691 5.5171E-05 -0.092846 -3.4867E-05 375.54015589124094 32.531 0.45587 30.382 30.171 30.627 -2.1483 18 12 2 0 0 0 0.85675 1 5596 5596 10.899 0.74838 1 893070 19289 10043 12596 12600 19235 19235 0.04171628874951239 HIWRHASH 8 Unmodified _HIWRHASH_ 0 0 0 REV__ENST00000334512.9_1_10:81074688-81075099:+|nuORF REV__ENST00000334512.9_1_10:81074688-81075099:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2655639648438 2 522.267742 1042.52093 NaN NaN NaN NaN NaN NaN NaN 56.896 1 54.002 53.502 54.502 -2.8944 0 0 0 0.21486 1 10912 10912 5.7604 0.028577 1 + 19290 20646 12597 12601 19236 19236 0.0013708052008496452 HIWVSQEID 9 Unmodified _HIWVSQEID_ 0 0 0 REV__ENSG00000168016|ENST00000645898|TRANK1 REV__ENSG00000168016|ENST00000645898|TRANK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.11810302734375 3 376.189101 1125.54547 NaN NaN NaN NaN NaN NaN NaN 72.944 1 69.316 68.816 69.816 -3.6275 0 0 0 0.23508 1 13783 13783 4.1895 0.86986 1 + 19291 17989 12598 12602 19237 19237 -0.012277489077177961 HIYREDRKIT 10 Unmodified _HIYREDRKIT_ 0 0 0 REV__CPSF1|p.E1061K|1|0.77|ENSG00000071894|chr8:144395271-144395271|C/T|missense_variant REV__CPSF1|p.E1061K|1|0.77|ENSG00000071894|chr8:144395271-144395271|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.8456115722656 4 333.43611 1329.71533 -0.52331 -0.00017449 0.43521 0.00014512 -0.088102 -2.9376E-05 333.68690759263177 40.159 0.32361 37.524 37.369 37.692 -2.6348 13 8 2 0 0 0 0.91149 1 7449 7449 0.77653 0.078866 1 1015900 + 19292 13574 12599 12603 19238 19238 0.06366367094710768 HIYREDRKIT 10 Unmodified _HIYREDRKIT_ 0 0 0 REV__CPSF1|p.E1061K|1|0.77|ENSG00000071894|chr8:144395271-144395271|C/T|missense_variant REV__CPSF1|p.E1061K|1|0.77|ENSG00000071894|chr8:144395271-144395271|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 333.43611 1329.71533 -0.57067 -0.00019028 -0.042779 -1.4264E-05 -0.61345 -0.00020455 333.4362428202011 39.946 0.27904 37.456 37.335 37.614 -2.4896 -0.03395 -0.00054889 NaN 0.77653 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 822180 + 19293 13574 12599 12603 0.06366367094710768 HIYVNKEY 8 Unmodified _HIYVNKEY_ 0 0 0 ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.0863952636719 3 355.850308 1064.5291 -0.75025 -0.00026698 0.69169 0.00024614 -0.05856 -2.0839E-05 355.85049334973337 51.01 0.73428 47.958 47.609 48.343 -3.0517 37 20 3 0 0 0 1.0262 1 9427 9427 0.45834 0 1 1950100 19294 11310 12600 12604 19239 19239 -0.0005883007379452465 HKAKGQFN 8 Unmodified _HKAKGQFN_ 0 0 0 REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1 REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2498779296875 2 465.251226 928.487899 NaN NaN NaN NaN NaN NaN NaN 172.37 1 172.37 171.87 172.87 0 0 0 0 0.21486 1 35584 35584 12.532 0.89125 1 + 19295 24188 12601 12605 19240 19240 0.02079453677379206 HKATNKSSE 9 Unmodified _HKATNKSSE_ 0 0 0 RP1|p.P1282Lfs*12|1|0.33|ENSG00000104237|chr8:54627719-54627719|T/-|frameshift_variant;RP1|p.C1315Yfs*12|1|0.06|ENSG00000104237|chr8:54627825-54627826|-/ATTTACA|frameshift_variant;RP1|p.L1493Vfs*4|1|0.09|ENSG00000104237|chr8:54628358-54628359|-/GTCCGTGG|frameshift_variant;RP1|p.K1581Nfs*7|1|0.44|ENSG00000104237|chr8:54628619-54628619|A/-|frameshift_variant;RP1|p.P1648Lfs*62|1|0.32|ENSG00000104237|chr8:54628817-54628817|T/-|frameshift_variant;RP1|p.H1831Mfs*17|1|0.32|ENSG00000104237|chr8:54629369-54629369|T/-|frameshift_variant;ENSG00000104237|ENST00000220676|RP1 RP1|p.P1282Lfs*12|1|0.33|ENSG00000104237|chr8:54627719-54627719|T/-|frameshift_variant RP1|p.P1282Lfs*12|1|0.33|ENSG00000104237|chr8:54627719-54627719|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.8066101074219 3 334.505201 1000.49377 NaN NaN NaN NaN NaN NaN NaN 40.72 1 38.085 37.585 38.585 -2.6348 0 0 0 0.23508 1 7593 7593 2.7352 0 1 19296 2224 12602 12606 19241 19241 -0.006454926016090212 HKDAKRKMK 9 Unmodified _HKDAKRKMK_ 0 0 0 nc|ENSG00000198000|Q76FK4-2|NOL8;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8;ENST00000463593.6_1_9:95060120-95060712:-|nuORF;ENST00000544867.5_1_9:95060120-95062368:-|nuORF nc|ENSG00000198000|Q76FK4-2|NOL8 nc|ENSG00000198000|Q76FK4-2|NOL8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2142333984375 3 381.225603 1140.65498 NaN NaN NaN NaN NaN NaN NaN 141.65 1 136.78 136.28 137.28 -4.8678 0 0 0 0.19622 1 27333 27333 0.0033805 0.0019993 1 19297 7420 12603 12607 19242 19242 0.09027978230619738 HKDQWRHWRKR 11 Unmodified _HKDQWRHWRKR_ 0 0 0 REV__nc|ENSG00000263715|P34998-5|CRHR1 REV__nc|ENSG00000263715|P34998-5|CRHR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 817.0004272460938 2 816.940173 1631.86579 NaN NaN NaN NaN NaN NaN NaN 167.73 1 167.73 167.23 168.23 0 0 0 0 0.22632 1 34295 34295 0.58532 0.31599 1 + 19298 15610 12604 12608 19243 19243 0.07513571596859947 HKEPQQRR 8 Unmodified _HKEPQQRR_ 0 0 0 REV__ENST00000557989.1_1_15:30115011-30115290:+|nuORF REV__ENST00000557989.1_1_15:30115011-30115290:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2116394042969 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 24.974 1 23.12 22.62 23.62 -1.8534 0 0 0 0.21486 1 4084 4084 5.7319 0 1 + 19299 23018 12605 12609 19244 19244 0.04348717374705302 HKGEHKGH 8 Unmodified _HKGEHKGH_ 0 0 0 ENST00000503063.5_1_17:48625445-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-4|SPATA20;ENST00000512416.5_1_17:48625445-48625815:+|nuORF;ENST00000505336.1_1_17:48625445-48626125:+|nuORF ENST00000503063.5_1_17:48625445-48628667:+|nuORF ENST00000503063.5_1_17:48625445-48628667:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24072265625 2 465.23865 928.462747 NaN NaN NaN NaN NaN NaN NaN 171.09 1 166.17 165.67 166.67 -4.9149 0 0 0 0.21486 1 33854 33854 7.9102 1.187 1 19300 10641 12606 12610 19245 19245 -0.004346011251868731 HKGRINDK 8 Unmodified _HKGRINDK_ 0 0 0 REV__ENST00000489736.5_1_3:148904295-148925363:-|nuORF REV__ENST00000489736.5_1_3:148904295-148925363:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1676940917969 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 99.517 1 95.248 94.748 95.748 -4.2692 0 0 0 0.21486 1 19025 19025 0.40072 0 1 + 19301 14064 12607 12611 19246 19246 0.051305275974073083 HKHCYNIK 8 Unmodified _HKHCYNIK_ 0 0 0 REV__nc|ENSG00000130517|Q9NXJ5-2|PGPEP1 REV__nc|ENSG00000130517|Q9NXJ5-2|PGPEP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 348.1688232421875 3 348.179883 1041.51782 NaN NaN NaN NaN NaN NaN NaN 22.434 1 20.645 20.145 21.145 -1.7886 0 0 0 0.23899 1 3563 3563 1.3295 0 1 + 19302 16010 12608 12612 19247 19247 -0.0012793064897778095 HKHCYYSA 8 Unmodified _HKHCYYSA_ 0 0 0 ENST00000231137.5_1_5:140552292-140552361:+|nuORF ENST00000231137.5_1_5:140552292-140552361:+|nuORF ENST00000231137.5_1_5:140552292-140552361:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.1626892089844 3 336.816722 1007.42834 0.04435 1.4938E-05 -0.51028 -0.00017187 -0.46593 -0.00015693 336.81661829315533 51.116 0.73518 48.07 47.598 48.333 -3.0453 26 20 2 0 0 0 8448 1 9406 9406 0.68139 0.60813 1 630140 19303 8158 12609 12613 19248 19248 -0.0750818532832227 HKHFYWWEFIF 11 Unmodified _HKHFYWWEFIF_ 0 0 0 REV__ENSG00000007341|ENST00000358039|ST7L REV__ENSG00000007341|ENST00000358039|ST7L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.771728515625 3 547.266345 1638.7772 0.73226 0.00040074 0.41704 0.00022823 1.1493 0.00062897 547.6026988651358 100.98 0.10464 100.98 100.91 101.01 0 4 2 2 0 0 0 0.96227 1 19801 19801 0 0 1 602920 + 19304 13887 12610 12614 19249 19249 -0.016632814861623046 HKHGFFHR 8 Unmodified _HKHGFFHR_ 0 0 0 MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant;nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK;ICK|p.A167Gfs*16|1|0.05|ENSG00000112144|chr6:53018493-53018494|-/C|frameshift_variant;nc|ENSG00000112144|Q9UPZ9-2|CILK1;ENSG00000112144|ENST00000676107|CILK1 MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant MAK|p.N378Kfs*5|1|0.26|ENSG00000111837|chr6:10796007-10796008|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.277587890625 2 533.278109 1064.54167 NaN NaN NaN NaN NaN NaN NaN 12.118 1 10.998 10.498 11.498 -1.1206 0 0 0 0.21486 1 1424 1424 0.69038 0 1 19305 2652 12611 12615 19250 19250 0.011976708997281094 HKILIKRKLQ 10 Unmodified _HKILIKRKLQ_ 0 0 0 REV__nc|ENSG00000124181|P19174|PLCG1 REV__nc|ENSG00000124181|P19174|PLCG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 426.2908935546875 3 426.290713 1275.85031 NaN NaN NaN NaN NaN NaN NaN 20.061 1 18.426 17.926 18.926 -1.6351 0 0 0 0.22588 1 3066 3066 0.13989 0.04505 1 + 19306 15757 12612 12616 19251 19251 0.22341892027111498 HKITQITKA 9 Unmodified _HKITQITKA_ 0 0 0 REV__LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant REV__LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 347.5422668457031 3 347.213469 1038.61858 -0.63913 -0.00022192 0.279 9.6873E-05 -0.36013 -0.00012504 347.21343198800946 62.539 0.6297 62.539 62.173 62.803 0 41 17 4 0 0 0 0.35556 1 12037 12037 14.957 10.241 1 4501500 + 19307 16175 12613 12617 19252 19252 0.10081424605550637 HKITQITKA 9 Unmodified _HKITQITKA_ 0 0 0 REV__LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant REV__LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 347.213469 1038.61858 -0.63913 -0.00022192 0.279 9.6873E-05 -0.36013 -0.00012504 347.21343198800946 62.539 0.6297 62.539 62.173 62.803 0 0.15895 0.00029823 NaN 14.957 41 17 4 NaN NaN NaN NaN 0 NaN NaN 0 4501500 + 19308 16175 12613 12617 0.10081424605550637 HKITQITKA 9 Unmodified _HKITQITKA_ 0 0 0 REV__LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant REV__LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 347.213469 1038.61858 -0.265 -9.2011E-05 0.070166 2.4362E-05 -0.19483 -6.7648E-05 347.2134892140998 65.318 0.5054 62.271 62.038 62.543 -3.047 -0.10876 8.0698E-05 NaN 14.957 27 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4561700 + 19309 16175 12613 12617 0.10081424605550637 HKITQITKA 9 Unmodified _HKITQITKA_ 0 0 0 REV__LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant REV__LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 347.213469 1038.61858 0.246 8.5416E-05 -0.46102 -0.00016007 -0.21501 -7.4655E-05 347.2132348447524 65.788 0.49503 62.329 62.065 62.56 -3.4581 -0.050189 -0.0004726 NaN 14.957 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3028300 + 19310 16175 12613 12617 0.10081424605550637 HKKAVKRI 8 Unmodified _HKKAVKRI_ 0 0 0 tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1 tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1 tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2526550292969 2 490.329811 978.645068 NaN NaN NaN NaN NaN NaN NaN 143.44 1 138.78 138.28 139.28 -4.656 0 0 0 0.21486 1 28370 28370 2.3027 0 1 19311 26038 12614 12618 19253 19253 0.15489158287550708 HKKLKKCI 8 Unmodified _HKKLKKCI_ 0 0 0 nc|ENSG00000064652|Q9Y343-2|SNX24;ENSG00000064652|ENST00000261369|SNX24 nc|ENSG00000064652|Q9Y343-2|SNX24 nc|ENSG00000064652|Q9Y343-2|SNX24 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.21630859375 3 333.216157 996.626641 NaN NaN NaN NaN NaN NaN NaN 119.85 1 115.33 114.83 115.83 -4.5221 0 0 0 0.21486 1 23634 23634 0.45834 0 1 19312 1339 12615 12619 19254 19254 0.12819280321321003 HKKLKKCI 8 Unmodified _HKKLKKCI_ 0 0 0 nc|ENSG00000064652|Q9Y343-2|SNX24;ENSG00000064652|ENST00000261369|SNX24 nc|ENSG00000064652|Q9Y343-2|SNX24 nc|ENSG00000064652|Q9Y343-2|SNX24 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.2164306640625 3 333.216157 996.626641 NaN NaN NaN NaN NaN NaN NaN 118.52 1 113.91 113.41 114.41 -4.6106 0 0 0 0.21486 1 22741 22741 0.45834 0 1 19313 1339 12615 12619 19255 19255 0.12819280321321003 HKKLLWYYVAF 11 Unmodified _HKKLLWYYVAF_ 0 0 0 ENSG00000144481|ENST00000324695|TRPM8 ENSG00000144481|ENST00000324695|TRPM8 ENSG00000144481|ENST00000324695|TRPM8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.872802734375 4 367.709137 1466.80744 -0.29265 -0.00010761 0.31962 0.00011753 0.026977 9.9197E-06 367.7094916915084 19.727 0.20797 18.402 18.279 18.487 -1.3251 6 5 2 0 0 0 0.89037 1 3030 3030 0.11104 0 1 213610 19314 4556 12616 12620 19256 19256 0.0927107717900526 HKKRGAIT 8 Unmodified _HKKRGAIT_ 0 0 0 REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.190673828125 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 98.674 1 94.541 94.041 95.041 -4.1326 0 0 0 0.21486 1 19376 19376 3.5965 0 1 + 19315 20541 12617 12621 19257 19257 0.09244019465415931 HKKRGAIT 8 Unmodified _HKKRGAIT_ 0 0 0 REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.1907043457031 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 100.01 1 95.847 95.347 96.347 -4.1594 0 0 0 0.21486 1 19651 19651 3.5965 0 1 + 19316 20541 12617 12621 19258 19258 0.09244019465415931 HKKRGAIT 8 Unmodified _HKKRGAIT_ 0 0 0 REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.1908874511719 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 106.07 1 101.8 101.3 102.3 -4.2638 0 0 0 0.21486 1 20879 20879 3.5965 0 1 + 19317 20541 12617 12621 19259 19259 0.09244019465415931 HKKRGAIT 8 Unmodified _HKKRGAIT_ 0 0 0 REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.1909484863281 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 107.06 1 102.92 102.42 103.42 -4.135 0 0 0 0.21486 1 20586 20586 3.5965 0 1 + 19318 20541 12617 12621 19260 19260 0.09244019465415931 HKKVAKILL 9 Unmodified _HKKVAKILL_ 0 0 0 ENST00000518253.5_1_6:90312741-90340720:+|nuORF;nc|ENSG00000135299|Q9Y2G4-4|ANKRD6;nc|ENSG00000135299|Q9Y2G4-1|ANKRD6;nc|ENSG00000135299|Q9Y2G4-3|ANKRD6;ENSG00000135299|ENST00000339746|ANKRD6;ANKRD6|p.F672Lfs*34|1|0.4|ENSG00000135299|chr6:89630830-89630830|T/-|frameshift_variant ENST00000518253.5_1_6:90312741-90340720:+|nuORF ENST00000518253.5_1_6:90312741-90340720:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 525.3436279296875 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 142.41 1 137.38 136.88 137.88 -5.0261 0 0 0 0.19652 1 27450 27450 0.87518 0 1 19319 3913 12618 12622 19261 19261 0.18967768778657046 HKMWREWWMCH 11 Unmodified _HKMWREWWMCH_ 0 0 0 REV__ENST00000301180.9_1_12:51133363-51135252:+|nuORF REV__ENST00000301180.9_1_12:51133363-51135252:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3541870117188 2 815.354851 1628.69515 NaN NaN NaN NaN NaN NaN NaN 94.959 1 90.91 90.41 91.41 -4.0496 0 0 0 0.22632 1 18612 18612 0.00056442 0 1 + 19320 20407 12619 12623 19262 19262 -0.09405166432748047 HKMWREWWMCH 11 Unmodified _HKMWREWWMCH_ 0 0 0 REV__ENST00000301180.9_1_12:51133363-51135252:+|nuORF REV__ENST00000301180.9_1_12:51133363-51135252:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.352294921875 2 815.354851 1628.69515 NaN NaN NaN NaN NaN NaN NaN 131.52 1 126.89 126.39 127.39 -4.6359 0 0 0 0.23698 1 25917 25917 0.30703 0.30703 1 + 19321 20407 12619 12623 19263 19263 -0.09405166432748047 HKMWREWWMCH 11 Unmodified _HKMWREWWMCH_ 0 0 0 REV__ENST00000301180.9_1_12:51133363-51135252:+|nuORF REV__ENST00000301180.9_1_12:51133363-51135252:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3514404296875 2 815.354851 1628.69515 NaN NaN NaN NaN NaN NaN NaN 144.78 1 140.11 139.61 140.61 -4.6694 0 0 0 0.23698 1 28681 28681 0.26902 0.26902 1 + 19322 20407 12619 12623 19264 19264 -0.09405166432748047 HKMWREWWMCH 11 Unmodified _HKMWREWWMCH_ 0 0 0 REV__ENST00000301180.9_1_12:51133363-51135252:+|nuORF REV__ENST00000301180.9_1_12:51133363-51135252:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3519897460938 2 815.354851 1628.69515 NaN NaN NaN NaN NaN NaN NaN 157.25 1 152.46 151.96 152.96 -4.7885 0 0 0 0.23698 1 31270 31270 0.30703 0.30703 1 + 19323 20407 12619 12623 19265 19265 -0.09405166432748047 HKMWREWWMCH 11 Unmodified _HKMWREWWMCH_ 0 0 0 REV__ENST00000301180.9_1_12:51133363-51135252:+|nuORF REV__ENST00000301180.9_1_12:51133363-51135252:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3550415039062 2 815.354851 1628.69515 NaN NaN NaN NaN NaN NaN NaN 137.02 1 132.09 131.59 132.59 -4.9216 0 0 0 0.23698 1 26335 26335 0 0 1 + 19324 20407 12619 12623 19266 19266 -0.09405166432748047 HKNKWYRNV 9 Unmodified _HKNKWYRNV_ 0 0 0 REV__ENSG00000177511|ENST00000324000|ST8SIA3 REV__ENSG00000177511|ENST00000324000|ST8SIA3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7512817382812 2 622.835988 1243.65742 NaN NaN NaN NaN NaN NaN NaN 10.976 1 10.072 9.5717 10.572 -0.90401 0 0 0 0.23508 1 1419 1419 0.52476 0 1 + 19325 18562 12620 12624 19267 19267 0.0453414995993171 HKQADRSFY 9 Unmodified _HKQADRSFY_ 0 0 0 REV__ENSG00000128203|ENST00000215906|ASPHD2 REV__ENSG00000128203|ENST00000215906|ASPHD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3251342773438 2 576.283254 1150.55196 NaN NaN NaN NaN NaN NaN NaN 127.18 1 127.18 126.68 127.68 0 0 0 0 0.18039 1 25102 25102 4.7159 4.6521 1 + 19326 15915 12621 12625 19268 19268 -0.01729810956339861 HKQKQRHRKYR 11 Unmodified _HKQKQRHRKYR_ 0 0 0 REV__ENST00000590901.5_1_18:47808965-47812340:-|nuORF REV__ENST00000590901.5_1_18:47808965-47812340:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2631225585938 3 522.306308 1563.89709 NaN NaN NaN NaN NaN NaN NaN 115.02 1 110.47 109.97 110.97 -4.555 0 0 0 0.22632 1 22084 22084 0.172 0.077159 1 + 19327 17198 12622 12626 19269 19269 0.13770144630962022 HKQPIIPV 8 Unmodified _HKQPIIPV_ 0 0 0 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1;sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.19573974609375 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 72.015 1 68.477 67.977 68.977 -3.5385 0 0 0 0.23312 1 13658 13658 9.2438 9.1798 1 19328 25751 12623 12627 19270 19270 0.09702671893717252 HKREKSRGWER 11 Unmodified _HKREKSRGWER_ 0 0 0 REV__CACNA1E|p.R2083W|1|0.65|ENSG00000198216|chr1:181796706-181796706|C/T|missense_variant REV__CACNA1E|p.R2083W|1|0.65|ENSG00000198216|chr1:181796706-181796706|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26568603515625 3 490.267519 1467.78073 NaN NaN NaN NaN NaN NaN NaN 122.97 1 122.97 122.47 123.47 0 0 0 0 0.22632 1 24234 24234 0.172 0.14059 1 + 19329 13236 12624 12628 19271 19271 0.0655478134040095 HKRLSQVDP 9 Unmodified _HKRLSQVDP_ 0 0 0 nc|ENSG00000043514|Q9H3H1-3|TRIT1;nc|ENSG00000043514|Q9H3H1-2|TRIT1;nc|ENSG00000043514|Q9H3H1-5|TRIT1;ENSG00000043514|ENST00000316891|TRIT1;ENST00000462243.2_1_1:40318401-40323020:-|nuORF;TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant;nc|ENSG00000043514|Q9H3H1-4|TRIT1 nc|ENSG00000043514|Q9H3H1-3|TRIT1 nc|ENSG00000043514|Q9H3H1-3|TRIT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2784423828125 2 540.301447 1078.58834 -0.014937 -8.0705E-06 -1.6143 -0.00087221 -1.6292 -0.00088028 540.3033356017804 112.46 0.13207 108 107.94 108.07 -4.4538 7 3 3 0 0 0 0.5059 1 22150 22150 19.257 4.4187 1 706330 19330 1207 12625 12629 19272 19272 0.052190659403549944 HKRRHRLLK 9 Unmodified _HKRRHRLLK_ 0 0 0 REV__ENSG00000070476|ENST00000389709|ZXDC REV__ENSG00000070476|ENST00000389709|ZXDC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7653198242188 2 622.402164 1242.78978 NaN NaN NaN NaN NaN NaN NaN 18.384 1 18.384 17.884 18.884 0 0 0 0 0.19626 1 2957 2957 0.0033805 0 1 + 19331 14257 12626 12630 19273 19273 0.17809219487389782 HKRWHFIK 8 Unmodified _HKRWHFIK_ 0 0 0 ENSG00000181826|ENST00000454158|RELL1 ENSG00000181826|ENST00000454158|RELL1 ENSG00000181826|ENST00000454158|RELL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3317260742188 2 576.332885 1150.65122 NaN NaN NaN NaN NaN NaN NaN 139.75 1 134.9 134.4 135.4 -4.8492 0 0 0 0.23782 1 26948 26948 0.063987 0 1 19332 6747 12627 12631 19274 19274 0.08191676519072644 HKVTHDPP 8 Unmodified _HKVTHDPP_ 0 0 0 REV__ENST00000435880.6_1_2:70189834-70190005:-|nuORF REV__ENST00000435880.6_1_2:70189834-70190005:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2592468261719 2 465.743234 929.471915 0.35821 0.00016684 -0.14533 -6.7685E-05 0.21289 9.915E-05 465.743027409433 28.69 0.59051 26.693 26.31 26.9 -1.9962 34 16 4 0 0 0 0.91917 1 4880 4880 20.454 2.3186 1 1726200 + 19333 21663 12628 12632 19275 19275 0.004357474404741879 HKWGRSEKI 9 Unmodified _HKWGRSEKI_ 0 0 0 REV__ENSG00000138435|ENST00000348749|CHRNA1 REV__ENSG00000138435|ENST00000348749|CHRNA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2152099609375 3 380.880602 1139.61998 -0.53402 -0.0002034 0.17251 6.5707E-05 -0.3615 -0.00013769 381.2152332698317 39.432 0.6629 37.027 36.69 37.353 -2.4049 39 18 3 0 0 0 0.62314 1 7040 7040 11.495 1.3441 1 1247900 + 19334 16462 12629 12633 19276 19276 0.05575058694330437 HLAELLHEEL 10 Unmodified _HLAELLHEEL_ 0 0 0 TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant;nc|ENSG00000103168|Q15572-2|TAF1C;ENSG00000103168|ENST00000566732|TAF1C;nc|ENSG00000103168|Q15572|TAF1C;ENST00000562330.5_1_16:84215679-84216761:-|nuORF;ENST00000544090.5_1_16:84215181-84217023:-|nuORF;ENST00000566903.5_1_16:84212549-84216700:-|nuORF;ENST00000564208.5_1_16:84215181-84220577:-|nuORF;ENST00000537450.5_1_16:84215181-84219087:-|nuORF;ENST00000564774.5_1_16:84215181-84218621:-|nuORF;TAF1C|p.R425Vfs*43|1|0.23|ENSG00000103168|chr16:84181157-84181157|A/-|frameshift_variant;TAF1C|p.P454Lfs*14|1|0.28|ENSG00000103168|chr16:84181068-84181068|G/-|frameshift_variant TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2734375 2 602.322045 1202.62954 NaN NaN NaN NaN NaN NaN NaN 124.28 1 119.7 119.2 120.2 -4.5757 0 0 0 0.10883 1 24503 24503 47.749 26.212 1 19335 2169 12630 12634 19277 19277 0.036327821891973144 HLAEVLERV 9 Unmodified _HLAEVLERV_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2741088867188 2 533.306198 1064.59784 -0.039514 -2.1073E-05 0.25071 0.00013371 0.2112 0.00011263 533.306247090097 89.945 0.65981 89.945 89.599 90.259 0 45 18 3 0 0 0 0.25795 1 17585 17585 47.732 16.464 1 5055100 19336 5064 12631 12635 19278 19278 0.06812834225888764 HLAEVLERV 9 Unmodified _HLAEVLERV_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2867431640625 2 533.306198 1064.59784 0.11743 6.2626E-05 0.11976 6.387E-05 0.23719 0.0001265 533.306258929042 93.317 0.79848 89.473 89.158 89.956 -3.844 48 22 3 0 0 0 0.25795 1 17874 17874 55.235 19.108 1 3063600 19337 5064 12631 12635 19279 19279 0.06812834225888764 HLAEVSAEV 9 Unmodified _HLAEVSAEV_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7256164550781 2 477.748182 953.481811 0.1499 7.1616E-05 -0.29532 -0.00014109 -0.14542 -6.9472E-05 477.74794747714384 63.322 0.71125 59.906 59.541 60.252 -3.4158 43 19 3 0 0 0 0.095051 1 11814 11814 57.471 25.354 1 7820200 19338 3246 12632 12636 19280 19280 0.0032089065518903226 HLAEVSAEV 9 Unmodified _HLAEVSAEV_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.748182 953.481811 -0.39508 -0.00018875 0.24865 0.00011879 -0.14643 -6.9955E-05 477.74825743923884 60.134 0.63066 60.134 59.821 60.452 0 0.19273 0.00045833 NaN 57.471 45 17 4 NaN NaN NaN NaN 0 NaN NaN 0 10417000 19339 3246 12632 12636 0.0032089065518903226 HLAEVSAEV 9 Unmodified _HLAEVSAEV_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.748182 953.481811 0.070503 3.3683E-05 -0.23847 -0.00011393 -0.16797 -8.0246E-05 477.7479874912018 62.732 0.6219 59.77 59.5 60.122 -2.9614 -0.17098 -7.1099E-06 NaN 57.471 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 7587900 19340 3246 12632 12636 0.0032089065518903226 HLAEVSAEV 9 Unmodified _HLAEVSAEV_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.748182 953.481811 0.25568 0.00012215 -0.55167 -0.00026356 -0.29599 -0.00014141 477.74783355562295 63.212 0.72157 59.955 59.574 60.296 -3.2567 0.01364 -0.00030637 NaN 57.471 55 20 4 NaN NaN NaN NaN 0 NaN NaN 0 9361700 19341 3246 12632 12636 0.0032089065518903226 HLAGEVLL 8 Unmodified _HLAGEVLL_ 0 0 0 REV__INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant REV__INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.2552490234375 2 426.252903 850.491253 0.21261 9.0628E-05 -0.1006 -4.288E-05 0.11202 4.7748E-05 426.2528297474321 99.685 0.73973 95.388 95.007 95.746 -4.297 43 21 3 0 0 0 0.72231 1 19023 19023 11.114 0 1 4795300 + 19342 18940 12633 12637 19281 19281 0.06002703731383008 HLAGEVLL 8 Unmodified _HLAGEVLL_ 0 0 0 REV__INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant REV__INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 426.252903 850.491253 -0.12113 -5.1632E-05 -0.0026398 -1.1252E-06 -0.12377 -5.2757E-05 426.252965580293 99.414 0.69342 95.282 94.957 95.651 -4.1326 -0.072069 5.8482E-07 NaN 11.114 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4653700 + 19343 18940 12633 12637 0.06002703731383008 HLAGEVLL 8 Unmodified _HLAGEVLL_ 0 0 0 REV__INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant REV__INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 426.252903 850.491253 0.21261 9.0628E-05 -0.1006 -4.288E-05 0.11202 4.7748E-05 426.2528297474321 99.685 0.73973 95.388 95.007 95.746 -4.297 0.034722 -8.2924E-05 NaN 11.114 43 21 3 NaN NaN NaN NaN 0 NaN NaN 0 4795300 + 19344 18940 12633 12637 0.06002703731383008 HLAGEVLL 8 Unmodified _HLAGEVLL_ 0 0 0 REV__INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant REV__INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 426.252903 850.491253 -0.051748 -2.2058E-05 0.12214 5.206E-05 0.070387 3.0003E-05 426.25294571945375 99.347 0.76103 95.391 95.071 95.832 -3.9564 0.037347 0.00010696 NaN 11.114 48 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5261300 + 19345 18940 12633 12637 0.06002703731383008 HLALQKEIE 9 Unmodified _HLALQKEIE_ 0 0 0 REV__nc|ENSG00000188042|P56559|ARL4C REV__nc|ENSG00000188042|P56559|ARL4C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2704467773438 2 540.806031 1079.59751 0.3996 0.0002161 2.3401 0.0012655 2.7397 0.0014816 541.3095058293599 146.2 0.30649 141.2 141.05 141.36 -5 13 8 2 0 0 0 0.81703 1 28282 28282 14.838 1.3304 1 8664700 + 19346 19127 12634 12638 19282 19282 0.06089414506027424 HLALQKEIE 9 Unmodified _HLALQKEIE_ 0 0 0 REV__nc|ENSG00000188042|P56559|ARL4C REV__nc|ENSG00000188042|P56559|ARL4C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.806031 1079.59751 0.28017 0.00015152 5.6435 0.0030521 5.9237 0.0032036 540.8065684199667 145.81 0.13385 141.12 141.02 141.15 -4.6868 -0.040351 0.0026107 NaN 14.838 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2315700 + 19347 19127 12634 12638 0.06089414506027424 HLAPSLGQV 9 Unmodified _HLAPSLGQV_ 0 0 0 ENST00000324932.11_1_11:3794920-3800132:-|nuORF;NUP98|p.G12Vfs*171|1|0.39|ENSG00000110713|chr11:3782083-3782083|C/-|frameshift_variant ENST00000324932.11_1_11:3794920-3800132:-|nuORF ENST00000324932.11_1_11:3794920-3800132:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5424499511719 2 461.261259 920.507966 -0.10439 -4.8151E-05 0.47939 0.00022112 0.375 0.00017297 461.26142374130575 82.893 0.52148 79.194 78.933 79.455 -3.6985 24 14 2 0 0 0 0.14834 1 15820 15820 48.346 16.04 1 1559400 19348 8735 12635 12639 19283 19283 0.044532046173458184 HLAPSLGQV 9 Unmodified _HLAPSLGQV_ 0 0 0 ENST00000324932.11_1_11:3794920-3800132:-|nuORF;NUP98|p.G12Vfs*171|1|0.39|ENSG00000110713|chr11:3782083-3782083|C/-|frameshift_variant ENST00000324932.11_1_11:3794920-3800132:-|nuORF ENST00000324932.11_1_11:3794920-3800132:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.261259 920.507966 0.65578 0.00030249 -0.25576 -0.00011797 0.40002 0.00018452 461.26111119906165 79.419 0.59055 79.419 79.132 79.722 0 0.16016 -0.00052478 NaN 48.346 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1788500 19349 8735 12635 12639 0.044532046173458184 HLAPSLGQV 9 Unmodified _HLAPSLGQV_ 0 0 0 ENST00000324932.11_1_11:3794920-3800132:-|nuORF;NUP98|p.G12Vfs*171|1|0.39|ENSG00000110713|chr11:3782083-3782083|C/-|frameshift_variant ENST00000324932.11_1_11:3794920-3800132:-|nuORF ENST00000324932.11_1_11:3794920-3800132:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.261259 920.507966 -0.087994 -4.0588E-05 0.33782 0.00015582 0.24982 0.00011523 461.2613449456498 82.821 0.52804 79.213 78.849 79.377 -3.6079 -0.046178 2.2809E-05 NaN 48.346 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1596800 19350 8735 12635 12639 0.044532046173458184 HLAPSLGQV 9 Unmodified _HLAPSLGQV_ 0 0 0 ENST00000324932.11_1_11:3794920-3800132:-|nuORF;NUP98|p.G12Vfs*171|1|0.39|ENSG00000110713|chr11:3782083-3782083|C/-|frameshift_variant ENST00000324932.11_1_11:3794920-3800132:-|nuORF ENST00000324932.11_1_11:3794920-3800132:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.261259 920.507966 0.05688 2.6237E-05 0.37337 0.00017222 0.43025 0.00019846 461.2613618754561 83.084 0.61816 79.21 78.916 79.534 -3.8736 -0.048794 5.5608E-05 NaN 48.346 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1148200 19351 8735 12635 12639 0.044532046173458184 HLAYLNLTP 9 Unmodified _HLAYLNLTP_ 0 0 0 REV__ENST00000367816.5_1_1:169100886-169100919:+|nuORF REV__ENST00000367816.5_1_1:169100886-169100919:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2780151367188 2 521.290017 1040.56548 0.53702 0.00027994 -0.46597 -0.00024291 0.071048 3.7037E-05 521.2897244865675 47.951 1.1247 47.951 47.398 48.523 0 75 31 3 0 0 0 0.38188 1 9066 9066 26.884 0.61551 1 8883000 + 19352 20930 12636 12640 19284 19284 0.046820468228816026 HLAYLNLTP 9 Unmodified _HLAYLNLTP_ 0 0 0 REV__ENST00000367816.5_1_1:169100886-169100919:+|nuORF REV__ENST00000367816.5_1_1:169100886-169100919:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2819213867188 2 521.290017 1040.56548 -0.37958 -0.00019787 0.43932 0.00022901 0.059742 3.1143E-05 521.290164851605 50.819 1.1343 47.937 47.323 48.457 -2.8824 75 31 3 0 0 0 0.57447 1 9688 9688 14.838 0.93222 1 4136500 + 19353 20930 12636 12640 19285 19285 0.046820468228816026 HLAYLNLTP 9 Unmodified _HLAYLNLTP_ 0 0 0 REV__ENST00000367816.5_1_1:169100886-169100919:+|nuORF REV__ENST00000367816.5_1_1:169100886-169100919:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.290017 1040.56548 0.53702 0.00027994 -0.46597 -0.00024291 0.071048 3.7037E-05 521.2897244865675 47.951 1.1247 47.951 47.398 48.523 0 0.093495 -0.00065489 NaN 26.884 75 31 3 NaN NaN NaN NaN 0 NaN NaN 0 8883000 + 19354 20930 12636 12640 0.046820468228816026 HLAYLNLTP 9 Unmodified _HLAYLNLTP_ 0 0 0 REV__ENST00000367816.5_1_1:169100886-169100919:+|nuORF REV__ENST00000367816.5_1_1:169100886-169100919:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.290017 1040.56548 -0.37958 -0.00019787 0.43932 0.00022901 0.059742 3.1143E-05 521.290164851605 50.819 1.1343 47.937 47.323 48.457 -2.8824 0.07907 0.00028894 NaN 26.884 75 31 3 NaN NaN NaN NaN 0 NaN NaN 0 4136500 + 19355 20930 12636 12640 0.046820468228816026 HLAYLNLTP 9 Unmodified _HLAYLNLTP_ 0 0 0 REV__ENST00000367816.5_1_1:169100886-169100919:+|nuORF REV__ENST00000367816.5_1_1:169100886-169100919:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.290017 1040.56548 -0.017135 -8.9325E-06 -0.0024253 -1.2643E-06 -0.019561 -1.0197E-05 521.2899722764733 50.779 1.2788 47.727 47.064 48.343 -3.0517 -0.1301 -0.00017161 NaN 26.884 86 36 3 NaN NaN NaN NaN 0 NaN NaN 0 6463300 + 19356 20930 12636 12640 0.046820468228816026 HLCRLHDRLF 10 Unmodified _HLCRLHDRLF_ 0 0 0 REV__ENSG00000171492|ENST00000337338|LRRC8D REV__ENSG00000171492|ENST00000337338|LRRC8D MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2278137207031 3 437.236391 1308.68734 NaN NaN NaN NaN NaN NaN NaN 66.398 1 62.902 62.402 63.402 -3.4965 0 0 0 2.8426 1 12442 12442 0.013265 0 1 + 19357 18229 12637 12641 19286 19286 0.045347656335934516 HLCYGDHSL 9 Unmodified _HLCYGDHSL_ 0 0 0 REV__nc|ENSG00000138798|P01133-2|EGF REV__nc|ENSG00000138798|P01133-2|EGF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2776489257812 2 522.732009 1043.44946 0.0084129 4.3977E-06 0.058971 3.0826E-05 0.067384 3.5224E-05 523.2335798453688 53.817 0.55348 50.721 50.374 50.928 -3.0954 24 15 3 0 0 0 0.8319 1 9889 9889 12.532 0 1 1231400 + 19358 16494 12638 12642 19287 19287 -0.0705222001945458 HLDACSDL 8 Unmodified _HLDACSDL_ 0 0 0 ENST00000420329.6_1_15:91185432-91185957:+|nuORF ENST00000420329.6_1_15:91185432-91185957:+|nuORF ENST00000420329.6_1_15:91185432-91185957:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2362060546875 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 66.434 1 62.938 62.438 63.438 -3.4965 0 0 0 0.21323 1 12450 12450 14.582 0 1 19359 9659 12639 12643 19288 19288 -0.07147286693464139 HLDAELDAY 9 Unmodified _HLDAELDAY_ 0 0 0 nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6912841796875 2 523.743096 1045.47164 0.48644 0.00025477 -0.92706 -0.00048554 -0.44061 -0.00023077 523.7424932749907 81.555 0.38116 81.555 81.335 81.716 0 17 10 2 0 0 0 0.54076 1 15897 15897 26.884 22.128 1 2075500 19360 5259 12640 12644 19289 19289 -0.04927717070063409 HLDAQRLHY 9 Unmodified _HLDAQRLHY_ 0 0 0 ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1 ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 385.2570495605469 3 384.868473 1151.58359 -0.67485 -0.00025973 0.37114 0.00014284 -0.30371 -0.00011689 384.868564768483 42.943 0.55247 40.337 40.075 40.628 -2.606 34 15 3 0 0 0 0.10782 1 7719 7719 43.982 40.395 1 2784600 19361 20 12641 12645 19290 19290 0.013861817976021484 HLDAQRLHY 9 Unmodified _HLDAQRLHY_ 0 0 0 ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1 ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 384.868473 1151.58359 0.044133 1.6985E-05 -0.29519 -0.00011361 -0.25106 -9.6625E-05 384.86836773801537 40.153 0.53234 40.153 39.93 40.462 0 -0.1473 -0.00034857 NaN 43.982 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2209600 19362 20 12641 12645 0.013861817976021484 HLDAQRLHY 9 Unmodified _HLDAQRLHY_ 0 0 0 ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1 ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 384.868473 1151.58359 -0.32672 -0.00012574 0.14084 5.4204E-05 -0.18588 -7.1539E-05 384.8684660352472 43.041 0.53743 40.322 40.057 40.595 -2.7191 0.021941 0.00015487 NaN 43.982 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4831500 19363 20 12641 12645 0.013861817976021484 HLDAQRLHY 9 Unmodified _HLDAQRLHY_ 0 0 0 ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1 ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 384.868473 1151.58359 -0.053604 -2.063E-05 -0.21111 -8.125E-05 -0.26472 -0.00010188 384.86837459200507 43.04 0.5247 40.389 40.093 40.618 -2.651 0.088932 -0.00025149 NaN 43.982 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4321700 19364 20 12641 12645 0.013861817976021484 HLDEAIHVL 9 Unmodified _HLDEAIHVL_ 0 0 0 TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3 TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6864013671875 2 523.785099 1045.55564 0.11234 5.8844E-05 -0.029089 -1.5236E-05 0.083254 4.3607E-05 523.7850106719507 96.235 0.65692 96.235 95.871 96.528 0 29 18 2 0 0 0 0.054955 1 18823 18823 71.134 29.039 1 5053700 19365 1451 12642 12646 19291 19291 0.03468858817495857 HLDEAIHVL 9 Unmodified _HLDEAIHVL_ 0 0 0 TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3 TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6790771484375 2 523.785099 1045.55564 -0.14749 -7.7252E-05 -0.085744 -4.4911E-05 -0.23323 -0.00012216 523.7850318215221 99.872 0.70246 95.739 95.405 96.108 -4.1326 47 19 4 0 0 0 0.1793 1 19692 19692 39.957 9.7325 1 8877400 19366 1451 12642 12646 19292 19292 0.03468858817495857 HLDEAIHVL 9 Unmodified _HLDEAIHVL_ 0 0 0 TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3 TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6858520507812 2 523.785099 1045.55564 -0.27675 -0.00014496 0.050881 2.6651E-05 -0.22587 -0.00011831 523.7851565429673 100.11 0.73936 95.812 95.45 96.189 -4.297 48 21 3 0 0 0 8.0574E-06 2 19117 19100;19117 139.54 82.073 1 9627000 19367 1451 12642 12646 19293;19294 19294 0.03468858817495857 HLDEHVPVV 9 Unmodified _HLDEHVPVV_ 0 0 0 ENSG00000170677|ENST00000397942|SOCS6 ENSG00000170677|ENST00000397942|SOCS6 ENSG00000170677|ENST00000397942|SOCS6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2658081054688 2 522.777274 1043.53999 0.13938 7.2864E-05 0.29588 0.00015468 0.43526 0.00022754 522.7773574466286 72.338 0.79826 72.338 71.917 72.715 0 51 22 3 0 0 0 0.74655 1 13973 13973 21.747 4.8044 1 7853600 19368 6090 12643 12647 19295 19295 0.019965723004588654 HLDEHVPVV 9 Unmodified _HLDEHVPVV_ 0 0 0 ENSG00000170677|ENST00000397942|SOCS6 ENSG00000170677|ENST00000397942|SOCS6 ENSG00000170677|ENST00000397942|SOCS6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2657470703125 2 522.777274 1043.53999 0.27333 0.00014289 0.62281 0.00032559 0.89614 0.00046848 522.7775152195045 75.893 0.89668 72.259 71.785 72.681 -3.6337 59 25 3 0 0 0 0.13419 1 14445 14445 50.855 36.949 1 7094400 19369 6090 12643 12647 19296 19296 0.019965723004588654 HLDESPFAE 9 Unmodified _HLDESPFAE_ 0 0 0 REV__ENSG00000141431|ENST00000269197|ASXL3 REV__ENSG00000141431|ENST00000269197|ASXL3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2822875976562 2 522.735271 1043.45599 0.47745 0.00024958 -0.89478 -0.00046773 -0.41733 -0.00021815 522.7346374709089 48.736 0.63654 48.736 48.418 49.055 0 35 17 3 0 0 0 0.74655 1 9240 9240 21.747 6.9084 1 3207000 + 19370 13137 12644 12648 19297 19297 -0.064000035871004 HLDGHAVAV 9 Unmodified _HLDGHAVAV_ 0 0 0 KLHL11|p.T529Rfs*15|1|0.06|ENSG00000178502|chr17:41854280-41854281|TG/-|frameshift_variant;ENSG00000178502|ENST00000319121|KLHL11 KLHL11|p.T529Rfs*15|1|0.06|ENSG00000178502|chr17:41854280-41854281|TG/-|frameshift_variant KLHL11|p.T529Rfs*15|1|0.06|ENSG00000178502|chr17:41854280-41854281|TG/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24462890625 2 459.743234 917.471915 0.23315 0.00010719 0.36943 0.00016984 0.60258 0.00027703 459.7430598305208 35.034 0.44675 35.034 34.791 35.238 0 20 12 4 0 0 0 0.25702 1 6425 6425 34.102 12.565 1 977960 19371 6581 12645 12649 19298 19298 0.0098774744047887 HLDGHAVAV 9 Unmodified _HLDGHAVAV_ 0 0 0 KLHL11|p.T529Rfs*15|1|0.06|ENSG00000178502|chr17:41854280-41854281|TG/-|frameshift_variant;ENSG00000178502|ENST00000319121|KLHL11 KLHL11|p.T529Rfs*15|1|0.06|ENSG00000178502|chr17:41854280-41854281|TG/-|frameshift_variant KLHL11|p.T529Rfs*15|1|0.06|ENSG00000178502|chr17:41854280-41854281|TG/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2491149902344 2 459.743234 917.471915 -0.47885 -0.00022015 0.21643 9.9504E-05 -0.26241 -0.00012064 459.7435128696365 37.21 0.51745 34.741 34.5 35.017 -2.4688 24 14 2 0 0 0 0.38188 1 6882 6882 26.884 5.3467 1 1155400 19372 6581 12645 12649 19299 19299 0.0098774744047887 HLDGHAVAV 9 Unmodified _HLDGHAVAV_ 0 0 0 KLHL11|p.T529Rfs*15|1|0.06|ENSG00000178502|chr17:41854280-41854281|TG/-|frameshift_variant;ENSG00000178502|ENST00000319121|KLHL11 KLHL11|p.T529Rfs*15|1|0.06|ENSG00000178502|chr17:41854280-41854281|TG/-|frameshift_variant KLHL11|p.T529Rfs*15|1|0.06|ENSG00000178502|chr17:41854280-41854281|TG/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24462890625 2 459.743234 917.471915 0.23668 0.00010881 0.34789 0.00015994 0.58457 0.00026875 459.7432091678558 37.187 0.45615 34.849 34.594 35.05 -2.3375 16 12 2 0 0 0 0.38188 1 6574 6574 26.884 0 1 818660 19373 6581 12645 12649 19300 19300 0.0098774744047887 HLDGQPFLRY 10 Unmodified _HLDGQPFLRY_ 0 0 0 ENSG00000204520|ENST00000449934|MICA;nc|ENSG00000204516|Q29980-2|MICB;ENSG00000204516|ENST00000252229|MICB ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7648315429688 2 623.32238 1244.63021 0.76898 0.00047933 -0.30818 -0.0001921 0.4608 0.00028723 623.3222051919901 100.64 1.2262 100.64 100.13 101.36 0 99 34 4 0 0 0 0.0053224 3 19727 19727;19802;19814 93.938 81.711 1 23758000 19374 7585 12646 12650 19301;19302;19303 19301 0.017676216288919022 HLDGQPFLRY 10 Unmodified _HLDGQPFLRY_ 0 0 0 ENSG00000204520|ENST00000449934|MICA;nc|ENSG00000204516|Q29980-2|MICB;ENSG00000204516|ENST00000252229|MICB ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7620849609375 2 623.32238 1244.63021 0.7557 0.00047105 -0.17762 -0.00011071 0.57808 0.00036033 623.3222800052197 104.6 1.0778 100.38 99.96 101.04 -4.2183 87 30 4 0 0 0 0.00016737 3 20576 20573;20576;20621 125.04 72.295 1 17328000 19375 7585 12646 12650 19304;19305;19306 19305 0.017676216288919022 HLDGQPFLRY 10 Unmodified _HLDGQPFLRY_ 0 0 0 ENSG00000204520|ENST00000449934|MICA;nc|ENSG00000204516|Q29980-2|MICB;ENSG00000204516|ENST00000252229|MICB ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7786865234375 2 623.32238 1244.63021 0.37867 0.00023603 0.056761 3.5381E-05 0.43543 0.00027141 623.3224329179407 104.79 1.2472 100.44 99.833 101.08 -4.346 106 35 4 0 0 0 7.2577E-11 3 20046 20046;20113;20122 152.89 98.112 1 18096000 19376 7585 12646 12650 19307;19308;19309 19307 0.017676216288919022 HLDGQPFLRY 10 Unmodified _HLDGQPFLRY_ 0 0 0 ENSG00000204520|ENST00000449934|MICA;nc|ENSG00000204516|Q29980-2|MICB;ENSG00000204516|ENST00000252229|MICB ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7760009765625 2 623.32238 1244.63021 0.93347 0.00058186 -0.53315 -0.00033232 0.40033 0.00024953 623.3220703503944 104.51 1.2829 100.46 99.839 101.12 -4.0543 107 35 4 0 0 0 0.15354 2 20158 20158;20183 38.176 22.927 1 17866000 19377 7585 12646 12650 19310;19311 19310 0.017676216288919022 HLDLGILYY 9 Unmodified _HLDLGILYY_ 0 0 0 ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;DPAGT1|p.T234Hfs*116|1|0.35|ENSG00000172269|chr11:119098432-119098433|-/A|frameshift_variant;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1 ENST00000414373.5_1_11:118967985-118971732:-|nuORF ENST00000414373.5_1_11:118967985-118971732:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 553.8501586914062 2 553.797675 1105.5808 0.21063 0.00011665 0.20953 0.00011604 0.42017 0.00023269 553.7974803229087 168.88 0.24249 163.95 163.83 164.07 -4.9295 9 6 2 0 0 0 0.60698 1 33299 33299 30.225 19.401 1 12476000 19378 882 12647 12651 19312 19312 0.03222913620084 HLDLGILYY 9 Unmodified _HLDLGILYY_ 0 0 0 ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;DPAGT1|p.T234Hfs*116|1|0.35|ENSG00000172269|chr11:119098432-119098433|-/A|frameshift_variant;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1 ENST00000414373.5_1_11:118967985-118971732:-|nuORF ENST00000414373.5_1_11:118967985-118971732:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 553.797675 1105.5808 0.33571 0.00018592 0.35974 0.00019922 0.69545 0.00038514 554.2992959366338 168.76 0.1405 163.97 163.9 164.04 -4.7898 0.010801 8.6416E-05 NaN 30.225 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 18073000 19379 882 12647 12651 0.03222913620084 HLDLHQRE 8 Unmodified _HLDLHQRE_ 0 0 0 nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8 nc|ENSG00000189195|Q5XKL5-4|BTBD8 nc|ENSG00000189195|Q5XKL5-4|BTBD8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6770629882812 2 524.270147 1046.52574 -0.22112 -0.00011593 -0.24421 -0.00012803 -0.46533 -0.00024396 524.7712041667039 75.368 0.5106 71.953 71.539 72.05 -3.4151 22 14 2 0 0 0 0.96284 1 14713 14713 19.439 9.3651 1 1986500 19380 12533 12648 12652 19313 19313 0.004339198721709181 HLDLKPLAAT 10 Unmodified _HLDLKPLAAT_ 0 0 0 REV__nc|ENSG00000175426|P29120-2|PCSK1 REV__nc|ENSG00000175426|P29120-2|PCSK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21392822265625 3 360.213358 1077.61824 0.3485 0.00012553 -0.28954 -0.0001043 0.058953 2.1236E-05 360.2131953692514 22.287 0.37768 20.813 20.593 20.971 -1.4742 31 10 4 0 0 0 0.65512 1 3777 3777 15.739 0.78146 1 3899700 + 19381 18476 12649 12653 19314 19314 0.08254004885679933 HLDMMKLR 8 Unmodified _HLDMMKLR_ 0 0 0 nc|ENSG00000205268|Q13946-3|PDE7A;nc|ENSG00000205268|Q13946-2|PDE7A;ENSG00000205268|ENST00000401827|PDE7A;PDE7A|p.Y186H|1|0.37|ENSG00000205268|chr8:65739541-65739541|A/G|missense_variant;ENST00000518667.1_1_8:66643803-66660021:-|nuORF nc|ENSG00000205268|Q13946-3|PDE7A nc|ENSG00000205268|Q13946-3|PDE7A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.277099609375 2 522.278072 1042.54159 -0.40596 -0.00021202 -0.0030723 -1.6046E-06 -0.40903 -0.00021363 522.2780570401796 52.25 0.4223 49.368 49.17 49.592 -2.8824 16 11 2 0 0 0 0.72861 1 9970 9970 10.183 2.5744 1 1120800 19382 7636 12650 12654 19315 19315 0.022021667932222044 HLDPPYSSE 9 Unmodified _HLDPPYSSE_ 0 0 0 REV__nc|ENSG00000151276|Q96QZ7-7|MAGI1 REV__nc|ENSG00000151276|Q96QZ7-7|MAGI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6864013671875 2 522.735271 1043.45599 0.10486 5.4813E-05 -0.020079 -1.0496E-05 0.084779 4.4317E-05 522.7351767126937 96.054 0.8293 96.054 95.661 96.491 0 50 23 3 0 0 0 0.60805 1 18823 18823 12.532 3.1484 1 3898900 + 19383 17055 12651 12655 19316 19316 -0.064000035871004 HLDQRSLRRRF 11 Unmodified _HLDQRSLRRRF_ 0 0 0 REV__ENSG00000147138|ENST00000645147|GPR174 REV__ENSG00000147138|ENST00000645147|GPR174 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 495.32891845703125 3 495.28328 1482.82801 NaN NaN NaN NaN NaN NaN NaN 145.04 1 145.04 144.54 145.54 0 0 0 0 0.22632 1 28987 28987 0.026206 0 1 + 19384 16922 12652 12656 19317 19317 0.10591060611409375 HLDQTTDTY 9 Unmodified _HLDQTTDTY_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1;ESPL1|p.Q1311Rfs*21|1|0.46|ENSG00000135476|chr12:53286668-53286669|AG/-|frameshift_variant;ENST00000535123.6_1_12:53673494-53681766:+|nuORF ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7794189453125 2 547.24346 1092.47237 0.81929 0.00044835 -0.50401 -0.00027582 0.31528 0.00017253 547.2431057745858 29.43 0.50042 27.474 27.154 27.655 -1.9561 30 13 3 0 0 0 0.14967 1 5289 5289 58.679 20.705 1 1725900 19385 3928 12653 12657 19318 19318 -0.07016922420984884 HLDQTTDTY 9 Unmodified _HLDQTTDTY_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1;ESPL1|p.Q1311Rfs*21|1|0.46|ENSG00000135476|chr12:53286668-53286669|AG/-|frameshift_variant;ENST00000535123.6_1_12:53673494-53681766:+|nuORF ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.24346 1092.47237 0.35767 0.00019573 -0.049878 -2.7296E-05 0.30779 0.00016844 547.2433565773152 29.32 0.56236 27.428 27.157 27.719 -1.8928 -0.0028518 0.00018629 NaN 88.954 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2107200 19386 3928 12653 12657 -0.07016922420984884 HLDQTTDTY 9 Unmodified _HLDQTTDTY_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1;ESPL1|p.Q1311Rfs*21|1|0.46|ENSG00000135476|chr12:53286668-53286669|AG/-|frameshift_variant;ENST00000535123.6_1_12:53673494-53681766:+|nuORF ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 547.24346 1092.47237 0.55004 0.00030101 -0.36265 -0.00019846 0.18739 0.00010255 547.2432687398332 29.458 0.59091 27.384 27.067 27.658 -2.0743 -0.046964 -0.00015604 NaN 88.954 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1785700 19387 3928 12653 12657 -0.07016922420984884 HLDRGFVTV 9 Unmodified _HLDRGFVTV_ 0 0 0 REV__ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant REV__ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2706909179688 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 74.993 1 71.27 70.77 71.77 -3.7227 0 0 0 0.19665 1 14179 14179 0.37959 0.37621 1 + 19388 12947 12654 12658 19319 19319 0.03640278537386621 HLDRIQVY 8 Unmodified _HLDRIQVY_ 0 0 0 REV__ENSG00000108021|ENST00000695737|TASOR2 REV__ENSG00000108021|ENST00000695737|TASOR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2730712890625 2 522.285266 1042.55598 -0.63743 -0.00033292 0.54699 0.00028568 -0.090447 -4.7239E-05 522.2851530737713 57.976 0.14436 54.725 54.65 54.794 -3.2517 6 3 2 0 0 0 0.69887 1 10755 10755 14.582 5.2343 1 603910 + 19389 15106 12655 12659 19320 19320 0.03640278537386621 HLDRLKGF 8 Unmodified _HLDRLKGF_ 0 0 0 REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 493.1803283691406 2 493.282526 984.550499 0.29169 0.00014389 -1.2227 -0.00060311 -0.93097 -0.00045923 493.2817380195615 122.35 0.67284 117.81 117.49 118.16 -4.5476 27 18 2 0 0 0 1.0035 1 24094 24094 6.3541 1.1234 1 1225000 + 19390 16344 12656 12660 19321 19321 0.057605997455766556 HLDTDVKRV 9 Unmodified _HLDTDVKRV_ 0 0 0 nc|ENSG00000177963|Q9NPQ8-2|RIC8A;nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A nc|ENSG00000177963|Q9NPQ8-2|RIC8A nc|ENSG00000177963|Q9NPQ8-2|RIC8A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.267822265625 2 541.80128 1081.58801 0.19301 0.00010457 0.14787 8.0116E-05 0.34088 0.00018469 541.8013575612024 26.462 0.34968 24.827 24.616 24.966 -1.6347 15 9 2 0 0 0 0.80264 1 4398 4398 17.113 1.8644 1 925980 19391 6549 12657 12661 19322 19322 0.050476462205324424 HLDTDVKRV 9 Unmodified _HLDTDVKRV_ 0 0 0 nc|ENSG00000177963|Q9NPQ8-2|RIC8A;nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A nc|ENSG00000177963|Q9NPQ8-2|RIC8A nc|ENSG00000177963|Q9NPQ8-2|RIC8A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.80128 1081.58801 1.2859 0.00069671 -0.97125 -0.00052622 0.31466 0.00017048 541.800598198358 26.547 0.30618 24.765 24.62 24.926 -1.7821 -0.046875 -0.00091215 NaN 17.113 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 676250 19392 6549 12657 12661 0.050476462205324424 HLDTEHCL 8 Unmodified _HLDTEHCL_ 0 0 0 REV__nc|ENSG00000095319|Q5SRE5-2|NUP188 REV__nc|ENSG00000095319|Q5SRE5-2|NUP188 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1681213378906 3 323.148248 966.422915 NaN NaN NaN NaN NaN NaN NaN 77.369 1 73.906 73.406 74.406 -3.4633 0 0 0 0.21486 1 15104 15104 0.45834 0 1 + 19393 14606 12658 12662 19323 19323 -0.061639089107984546 HLEAPLQVGM 10 Unmodified _HLEAPLQVGM_ 0 0 0 REV__nc|ENSG00000174611|Q8NBH2-3|KY REV__nc|ENSG00000174611|Q8NBH2-3|KY MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.78857421875 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 168.19 1 168.19 167.69 168.69 0 0 0 0 0.22588 1 34425 34425 10.074 0.72649 1 + 19394 18424 12659 12663 19324 19324 0.015977855998698942 HLEDHHDY 8 Unmodified _HLEDHHDY_ 0 0 0 CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;CSMD3|p.G3063Rfs*5|1|0.06|ENSG00000164796|chr8:112287208-112287209|-/G|frameshift_variant;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;CSMD3|p.A3641Cfs*13|1|0.36|ENSG00000164796|chr8:112228799-112228800|-/A|frameshift_variant;nc|ENSG00000164796|Q7Z407-2|CSMD3;CSMD3|p.F3640Lfs*61|7|0.35|ENSG00000164796|chr8:112228800-112228800|A/-|frameshift_variant;ENSG00000164796|ENST00000297405|CSMD3;CSMD3|p.L2190Yfs*46|1|0.29|ENSG00000164796|chr8:112341560-112341560|A/-|frameshift_variant CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.264892578125 2 533.222862 1064.43117 NaN NaN NaN NaN NaN NaN NaN 69.028 1 65.638 65.138 66.138 -3.3903 0 0 0 0.21486 1 13044 13044 10.183 5.4274 1 19395 729 12660 12664 19325 19325 -0.09846638669796448 HLEELVQWS 9 Unmodified _HLEELVQWS_ 0 0 0 REV__ENSG00000147324|ENST00000276282|MFHAS1 REV__ENSG00000147324|ENST00000276282|MFHAS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2129821777344 3 380.860984 1139.56112 -0.011351 -4.3232E-06 0.11163 4.2514E-05 0.10028 3.8191E-05 380.8609494672356 78.279 0.98646 74.513 74.18 75.166 -3.7664 37 27 2 0 0 0 0.82357 1 14816 14816 4.1895 0 1 2129300 + 19396 16932 12661 12665 19326 19326 -0.0030746239067411807 HLEEQIAKV 9 Unmodified _HLEEQIAKV_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2640991210938 2 533.798206 1065.58186 -0.13449 -7.1792E-05 -0.026142 -1.3955E-05 -0.16063 -8.5746E-05 533.7981831628582 53.427 0.55374 50.544 50.283 50.837 -2.8837 27 15 2 0 0 0 0.67852 1 10188 10188 18.373 15.378 1 2456900 19397 1621 12662 12666 19327 19327 0.05169127988983746 HLEEQIAKV 9 Unmodified _HLEEQIAKV_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2737426757812 2 533.798206 1065.58186 0.41126 0.00021953 -0.45287 -0.00024174 -0.041612 -2.2212E-05 533.7978771650717 53.752 0.59568 50.655 50.382 50.978 -3.0971 28 16 2 0 0 0 0.47592 1 9920 9920 17.113 16.268 1 2040300 19398 1621 12662 12666 19328 19328 0.05169127988983746 HLEEQIAKV 9 Unmodified _HLEEQIAKV_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27587890625 2 533.798206 1065.58186 0.014029 7.4885E-06 0.30827 0.00016456 0.3223 0.00017204 533.7982317427811 53.878 0.58831 50.782 50.374 50.963 -3.0954 32 16 3 0 0 0 0.38759 1 9928 9928 17.113 10.907 1 2082900 19399 1621 12662 12666 19329 19329 0.05169127988983746 HLEGSTEV 8 Unmodified _HLEGSTEV_ 0 0 0 APBA1|p.A8T|1|0.3|ENSG00000107282|chr9:69517189-69517189|C/T|missense_variant APBA1|p.A8T|1|0.3|ENSG00000107282|chr9:69517189-69517189|C/T|missense_variant APBA1|p.A8T|1|0.3|ENSG00000107282|chr9:69517189-69517189|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2149963378906 2 436.211432 870.408311 0.30294 0.00013215 -0.096483 -4.2087E-05 0.20646 9.006E-05 436.21139765912926 30.643 1.0226 28.526 28.011 29.033 -2.1167 62 28 3 0 0 0 0.76728 1 5595 5595 5.7604 0 1 1320500 19400 180 12663 12667 19330 19330 -0.03207657787288554 HLFETISQA 9 Unmodified _HLFETISQA_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6989135742188 2 523.269281 1044.52401 0.068694 3.5946E-05 -0.21343 -0.00011168 -0.14473 -7.5734E-05 523.2691381563455 88.982 0.56039 88.982 88.682 89.243 0 27 15 2 0 0 0 0.19271 1 17382 17382 54.774 27.89 1 3119400 19401 8038 12664 12668 19331 19331 0.0035286606359932193 HLFETISQA 9 Unmodified _HLFETISQA_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6942749023438 2 523.269281 1044.52401 -0.20432 -0.00010692 0.15442 8.0801E-05 -0.049907 -2.6115E-05 523.2691143656308 92.851 0.5883 88.925 88.652 89.241 -3.9251 29 16 2 0 0 0 0.085258 1 18190 18190 60.39 30.165 1 3068900 19402 8038 12664 12668 19332 19332 0.0035286606359932193 HLFETISQA 9 Unmodified _HLFETISQA_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6997680664062 2 523.269281 1044.52401 -0.34345 -0.00017971 0.058529 3.0627E-05 -0.28492 -0.00014909 523.2692995970629 93.078 0.65462 88.934 88.623 89.278 -4.1435 42 18 3 0 0 0 0.042631 1 17723 17723 74.423 32.328 1 3011800 19403 8038 12664 12668 19333 19333 0.0035286606359932193 HLFETISQA 9 Unmodified _HLFETISQA_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6959838867188 2 523.269281 1044.52401 0.13314 6.9668E-05 -0.12194 -6.3808E-05 0.0112 5.8604E-06 523.2690756793361 92.802 0.7496 88.958 88.546 89.296 -3.844 47 21 3 0 0 0 0.085258 1 17798 17798 60.39 30.165 1 3417800 19404 8038 12664 12668 19334 19334 0.0035286606359932193 HLFGWDGP 8 Unmodified _HLFGWDGP_ 0 0 0 REV__ENST00000424970.6_1_4:103189051-103189165:-|nuORF REV__ENST00000424970.6_1_4:103189051-103189165:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2504577636719 2 464.719227 927.423902 0.28297 0.0001315 -1.5933 -0.00074042 -1.3103 -0.00060892 464.7183244175879 108.33 0.6609 108.33 107.93 108.59 0 31 18 2 0 0 0 0.83439 1 21265 21265 20.871 7.3633 1 2010600 + 19405 21552 12665 12669 19335 19335 -0.04271326479579329 HLFHAAVQR 9 Unmodified _HLFHAAVQR_ 0 0 0 nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20135498046875 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 61.023 1 61.023 60.523 61.523 0 0 0 0 0.23508 1 11707 11707 10.8 3.1906 1 19406 5260 12666 12670 19336 19336 0.047508068684237514 HLFHAAVQR 9 Unmodified _HLFHAAVQR_ 0 0 0 nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201416015625 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 63.757 1 60.76 60.26 61.26 -2.9975 0 0 0 0.23508 1 12324 12324 7.609 0.88579 1 19407 5260 12666 12670 19337 19337 0.047508068684237514 HLFHSRRRSRE 11 Unmodified _HLFHSRRRSRE_ 0 0 0 nc|ENSG00000133069|O75069-2|TMCC2;ENSG00000133069|ENST00000358024|TMCC2 nc|ENSG00000133069|O75069-2|TMCC2 nc|ENSG00000133069|O75069-2|TMCC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 494.2834777832031 3 494.271263 1479.79196 NaN NaN NaN NaN NaN NaN NaN 157.5 1 152.23 151.73 152.73 -5.2712 0 0 0 0.22632 1 30552 30552 3.0723 1.6171 1 19408 3781 12667 12671 19338 19338 0.07125603434565164 HLFKCKFG 8 Unmodified _HLFKCKFG_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2646179199219 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 61.335 1 57.966 57.466 58.466 -3.3694 0 0 0 0.23664 1 11435 11435 3.2813 3.273 1 + 19409 17221 12668 12672 19339 19339 0.020827564704973156 HLFKYFQEVV 10 Unmodified _HLFKYFQEVV_ 0 0 0 CCDC180|p.L667Tfs*8|1|0.13|ENSG00000197816|chr9:97330353-97330354|-/A|frameshift_variant;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF;CCDC180|p.S1054Lfs*19|1|0.44|ENSG00000197816|chr9:97354591-97354591|T/-|frameshift_variant;CCDC180|p.K1351Sfs*28|1|0.14|ENSG00000197816|chr9:97364063-97364063|C/-|frameshift_variant;CCDC180|p.K1583Nfs*17|3|0.32|ENSG00000197816|chr9:97374551-97374551|C/-|frameshift_variant;ENSG00000197816|ENST00000529487|CCDC180;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000529787.2_1_9:100086199-100092633:+|nuORF CCDC180|p.L667Tfs*8|1|0.13|ENSG00000197816|chr9:97330353-97330354|-/A|frameshift_variant CCDC180|p.L667Tfs*8|1|0.13|ENSG00000197816|chr9:97330353-97330354|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22955322265625 3 437.236163 1308.68666 NaN NaN NaN NaN NaN NaN NaN 65.042 1 61.758 61.258 62.258 -3.2832 0 0 0 2.8426 1 12219 12219 1.9064 0.45126 1 19410 418 12669 12673 19340 19340 0.044662494655540286 HLFRDVAEV 9 Unmodified _HLFRDVAEV_ 0 0 0 ENSG00000132781|ENST00000456914|MUTYH;nc|ENSG00000132781|Q9UIF7-5|MUTYH;nc|ENSG00000132781|Q9UIF7-4|MUTYH;nc|ENSG00000132781|Q9UIF7-3|MUTYH;nc|ENSG00000132781|Q9UIF7-2|MUTYH;nc|ENSG00000132781|Q9UIF7|MUTYH;ENST00000492494.5_1_1:45798942-45805603:-|nuORF;ENST00000479746.6_1_1:45798723-45805603:-|nuORF;ENST00000476789.5_1_1:45798723-45805992:-|nuORF ENSG00000132781|ENST00000456914|MUTYH ENSG00000132781|ENST00000456914|MUTYH MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7926025390625 2 543.290548 1084.56654 0.67096 0.00036453 -0.35223 -0.00019136 0.31874 0.00017317 543.2902906983479 81.061 0.63638 81.061 80.733 81.369 0 35 17 3 0 0 0 0.18865 3 15788 15768;15780;15788 38.615 19.176 1 6241500 19411 3763 12670 12674 19341;19342;19343 19343 0.027642611918054172 HLFRDVAEV 9 Unmodified _HLFRDVAEV_ 0 0 0 ENSG00000132781|ENST00000456914|MUTYH;nc|ENSG00000132781|Q9UIF7-5|MUTYH;nc|ENSG00000132781|Q9UIF7-4|MUTYH;nc|ENSG00000132781|Q9UIF7-3|MUTYH;nc|ENSG00000132781|Q9UIF7-2|MUTYH;nc|ENSG00000132781|Q9UIF7|MUTYH;ENST00000492494.5_1_1:45798942-45805603:-|nuORF;ENST00000479746.6_1_1:45798723-45805603:-|nuORF;ENST00000476789.5_1_1:45798723-45805992:-|nuORF ENSG00000132781|ENST00000456914|MUTYH ENSG00000132781|ENST00000456914|MUTYH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7765502929688 2 543.290548 1084.56654 0.1923 0.00010447 -0.52543 -0.00028546 -0.33313 -0.00018099 543.290394175269 84.598 0.92778 80.934 80.573 81.501 -3.6641 55 26 3 0 0 0 0.025708 3 16534 16493;16534;16536 86.332 48.358 1 6231700 19412 3763 12670 12674 19344;19345;19346 19345 0.027642611918054172 HLFRDVAEV 9 Unmodified _HLFRDVAEV_ 0 0 0 ENSG00000132781|ENST00000456914|MUTYH;nc|ENSG00000132781|Q9UIF7-5|MUTYH;nc|ENSG00000132781|Q9UIF7-4|MUTYH;nc|ENSG00000132781|Q9UIF7-3|MUTYH;nc|ENSG00000132781|Q9UIF7-2|MUTYH;nc|ENSG00000132781|Q9UIF7|MUTYH;ENST00000492494.5_1_1:45798942-45805603:-|nuORF;ENST00000479746.6_1_1:45798723-45805603:-|nuORF;ENST00000476789.5_1_1:45798723-45805992:-|nuORF ENSG00000132781|ENST00000456914|MUTYH ENSG00000132781|ENST00000456914|MUTYH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.791748046875 2 543.290548 1084.56654 0.20916 0.00011364 -1.2915 -0.00070166 -1.0823 -0.00058802 543.2891469956745 84.892 1.0079 80.982 80.595 81.602 -3.9093 51 28 3 0 0 0 0.18865 2 16145 16093;16145 38.615 15.878 1 4631500 19413 3763 12670 12674 19347;19348 19348 0.027642611918054172 HLFRDVAEV 9 Unmodified _HLFRDVAEV_ 0 0 0 ENSG00000132781|ENST00000456914|MUTYH;nc|ENSG00000132781|Q9UIF7-5|MUTYH;nc|ENSG00000132781|Q9UIF7-4|MUTYH;nc|ENSG00000132781|Q9UIF7-3|MUTYH;nc|ENSG00000132781|Q9UIF7-2|MUTYH;nc|ENSG00000132781|Q9UIF7|MUTYH;ENST00000492494.5_1_1:45798942-45805603:-|nuORF;ENST00000479746.6_1_1:45798723-45805603:-|nuORF;ENST00000476789.5_1_1:45798723-45805992:-|nuORF ENSG00000132781|ENST00000456914|MUTYH ENSG00000132781|ENST00000456914|MUTYH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7923583984375 2 543.290548 1084.56654 0.08252 4.4833E-05 -1.1627 -0.00063169 -1.0802 -0.00058686 543.2896239633687 84.738 0.89989 81.027 80.629 81.529 -3.7117 59 25 3 0 0 0 0.11282 2 16189 16147;16189 51.415 22.334 1 5118100 19414 3763 12670 12674 19349;19350 19350 0.027642611918054172 HLGDNGFR 8 Unmodified _HLGDNGFR_ 0 0 0 REV__ENST00000543754.1_1_12:132425763-132428128:+|nuORF REV__ENST00000543754.1_1_12:132425763-132428128:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22412109375 2 458.225208 914.435863 NaN NaN NaN NaN NaN NaN NaN 26.961 1 25.039 24.539 25.539 -1.9222 0 0 0 0.23782 1 4485 4485 0.12286 0 1 + 19415 18546 12671 12675 19351 19351 -0.024777097363767098 HLGEIPITV 9 Unmodified _HLGEIPITV_ 0 0 0 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2599182128906 2 489.784567 977.554582 NaN NaN NaN NaN NaN NaN NaN 91.39 1 91.39 90.89 91.89 0 0 0 0 0.034015 1 17858 17858 60.39 12.641 1 19416 438 12672 12676 19352 19352 0.06490644448615512 HLGEIPITV 9 Unmodified _HLGEIPITV_ 0 0 0 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2648010253906 2 489.784567 977.554582 -0.24206 -0.00011856 0.82993 0.00040649 0.58787 0.00028793 489.7849297489923 95.179 0.3869 91.298 91.09 91.477 -3.881 15 10 2 0 0 0 0.11447 1 18242 18242 50.855 3.1063 1 852890 19417 438 12672 12676 19353 19353 0.06490644448615512 HLGHDLGH 8 Unmodified _HLGHDLGH_ 0 0 0 ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C ENSG00000149289|ENST00000278590|ZC3H12C ENSG00000149289|ENST00000278590|ZC3H12C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 444.2617492675781 2 443.219926 884.425299 -0.1909 -8.461E-05 -0.97623 -0.00043269 -1.1671 -0.0005173 443.2193919076812 68.724 0.83283 65.545 65.141 65.974 -3.1796 48 23 3 0 0 0 0.72231 1 13312 13312 11.114 1.767 1 5807600 19418 4782 12673 12677 19354 19354 -0.02153692390800188 HLGHDLGH 8 Unmodified _HLGHDLGH_ 0 0 0 ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C ENSG00000149289|ENST00000278590|ZC3H12C ENSG00000149289|ENST00000278590|ZC3H12C MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 443.219926 884.425299 -0.12822 -5.6829E-05 -1.2056 -0.00053436 -1.3339 -0.00059119 443.2193657481103 65.637 0.72136 65.637 65.312 66.033 0 0.06012 0.00014155 NaN 11.114 39 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3333700 19419 4782 12673 12677 -0.02153692390800188 HLGHDLGH 8 Unmodified _HLGHDLGH_ 0 0 0 ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C ENSG00000149289|ENST00000278590|ZC3H12C ENSG00000149289|ENST00000278590|ZC3H12C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 443.219926 884.425299 0.20919 9.2719E-05 -1.4587 -0.00064652 -1.2495 -0.0005538 443.2191806945085 68.97 1.2515 65.58 65.115 66.366 -3.3903 0.0028473 -8.2769E-05 NaN 11.114 73 35 3 NaN NaN NaN NaN 0 NaN NaN 0 3821500 19420 4782 12673 12677 -0.02153692390800188 HLGKRSLKR 9 Unmodified _HLGKRSLKR_ 0 0 0 nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL;MASTL|p.I458Nfs*5|1|0.32|ENSG00000120539|chr10:27170324-27170325|-/A|frameshift_variant;MASTL|p.N564Ifs*4|1|0.29|ENSG00000120539|chr10:27170646-27170646|A/-|frameshift_variant nc|ENSG00000120539|Q96GX5-2|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7835693359375 2 547.848899 1093.68324 NaN NaN NaN NaN NaN NaN NaN 74.716 1 71.04 70.54 71.54 -3.6764 0 0 0 0.23508 1 14124 14124 4.3292 1.44 1 19421 3140 12674 12678 19355 19355 0.14015044202210447 HLGLLEKKK 9 Unmodified _HLGLLEKKK_ 0 0 0 ENST00000486563.1_1_1:38478474-38482093:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENSG00000183520|ENST00000373014|UTP11 ENST00000486563.1_1_1:38478474-38482093:+|nuORF ENST00000486563.1_1_1:38478474-38482093:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2767944335938 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 113.05 1 108.52 108.02 109.02 -4.5259 0 0 0 0.19634 1 21702 21702 0.029283 0.025902 1 19422 6852 12675 12679 19356 19356 0.1408658801931324 HLGLLEKKK 9 Unmodified _HLGLLEKKK_ 0 0 0 ENST00000486563.1_1_1:38478474-38482093:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENSG00000183520|ENST00000373014|UTP11 ENST00000486563.1_1_1:38478474-38482093:+|nuORF ENST00000486563.1_1_1:38478474-38482093:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2767944335938 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 113.08 1 108.55 108.05 109.05 -4.5259 0 0 0 0.23508 1 21706 21706 2.3027 0.24298 1 19423 6852 12675 12679 19357 19357 0.1408658801931324 HLGQFDQR 8 Unmodified _HLGQFDQR_ 0 0 0 REV__nc|ENSG00000175054|Q13535-2|ATR REV__nc|ENSG00000175054|Q13535-2|ATR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.8456115722656 3 334.170152 999.488627 -0.53348 -0.00017827 0.26576 8.8808E-05 -0.26772 -8.9463E-05 334.17020182368924 39.987 0.3854 37.438 37.206 37.592 -2.5491 16 10 2 0 0 0 1.0243 1 7449 7449 1.6526 0 1 810570 + 19424 18448 12676 12680 19358 19358 -0.011137516735743702 HLGVCASH 8 Unmodified _HLGVCASH_ 0 0 0 ENST00000452519.5_2_22:38147480-38150984:+|nuORF ENST00000452519.5_2_22:38147480-38150984:+|nuORF ENST00000452519.5_2_22:38147480-38150984:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 412.25982666015625 2 412.197605 822.380657 NaN NaN NaN NaN NaN NaN NaN 47.015 1 47.015 46.515 47.515 0 0 0 0 0.21486 1 8860 8860 6.3541 0.59368 1 19425 9992 12677 12681 19359 19359 -0.0376383952851711 HLHFKHLF 8 Unmodified _HLHFKHLF_ 0 0 0 ENST00000472110.2_1_22:42089702-42089783:+|nuORF ENST00000472110.2_1_22:42089702-42089783:+|nuORF ENST00000472110.2_1_22:42089702-42089783:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015686035156 3 360.203016 1077.58722 NaN NaN NaN NaN NaN NaN NaN 61.262 1 61.262 60.762 61.762 0 0 0 0 0.21171 1 11755 11755 15.847 1.4418 1 19426 10221 12678 12682 19360 19360 0.051528963621194634 HLHFKHLF 8 Unmodified _HLHFKHLF_ 0 0 0 ENST00000472110.2_1_22:42089702-42089783:+|nuORF ENST00000472110.2_1_22:42089702-42089783:+|nuORF ENST00000472110.2_1_22:42089702-42089783:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2018737792969 3 360.203016 1077.58722 NaN NaN NaN NaN NaN NaN NaN 109.26 1 109.26 108.76 109.76 0 0 0 0 0.21486 1 21481 21481 12.532 3.1484 1 19427 10221 12678 12682 19361 19361 0.051528963621194634 HLHFKHLF 8 Unmodified _HLHFKHLF_ 0 0 0 ENST00000472110.2_1_22:42089702-42089783:+|nuORF ENST00000472110.2_1_22:42089702-42089783:+|nuORF ENST00000472110.2_1_22:42089702-42089783:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20184326171875 3 360.203016 1077.58722 NaN NaN NaN NaN NaN NaN NaN 109.52 1 109.52 109.02 110.02 0 0 0 0 0.21486 1 21533 21533 7.9102 2.1783 1 19428 10221 12678 12682 19362 19362 0.051528963621194634 HLHFKHLF 8 Unmodified _HLHFKHLF_ 0 0 0 ENST00000472110.2_1_22:42089702-42089783:+|nuORF ENST00000472110.2_1_22:42089702-42089783:+|nuORF ENST00000472110.2_1_22:42089702-42089783:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018127441406 3 360.203016 1077.58722 NaN NaN NaN NaN NaN NaN NaN 64.023 1 61.025 60.525 61.525 -2.9975 0 0 0 0.20462 1 12376 12376 21.747 6.4982 1 19429 10221 12678 12682 19363 19363 0.051528963621194634 HLHFKHLF 8 Unmodified _HLHFKHLF_ 0 0 0 ENST00000472110.2_1_22:42089702-42089783:+|nuORF ENST00000472110.2_1_22:42089702-42089783:+|nuORF ENST00000472110.2_1_22:42089702-42089783:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20159912109375 3 360.203016 1077.58722 NaN NaN NaN NaN NaN NaN NaN 113.09 1 108.64 108.14 109.14 -4.4539 0 0 0 0.21486 1 22283 22283 7.9102 2.1783 1 19430 10221 12678 12682 19364 19364 0.051528963621194634 HLHFKHLF 8 Unmodified _HLHFKHLF_ 0 0 0 ENST00000472110.2_1_22:42089702-42089783:+|nuORF ENST00000472110.2_1_22:42089702-42089783:+|nuORF ENST00000472110.2_1_22:42089702-42089783:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2014465332031 3 360.203016 1077.58722 NaN NaN NaN NaN NaN NaN NaN 113.16 1 108.88 108.38 109.38 -4.2725 0 0 0 0.21486 1 21791 21791 12.532 2.9876 1 19431 10221 12678 12682 19365 19365 0.051528963621194634 HLHFRLGQA 9 Unmodified _HLHFRLGQA_ 0 0 0 ENST00000357164.3_1_5:150647033-150647198:+|nuORF ENST00000357164.3_1_5:150647033-150647198:+|nuORF ENST00000357164.3_1_5:150647033-150647198:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20184326171875 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 122.2 1 117.67 117.17 118.17 -4.5305 0 0 0 0.20699 1 23523 23523 21.537 3.1639 1 19432 8978 12679 12683 19366 19366 0.047508068684237514 HLHIHPERL 9 Unmodified _HLHIHPERL_ 0 0 0 REV__ENST00000405995.5_1_9:134373334-134373382:+|nuORF REV__ENST00000405995.5_1_9:134373334-134373382:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3218994140625 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 153.95 1 149.18 148.68 149.68 -4.7684 0 0 0 0.19636 1 30594 30594 2.4985 2.2331 1 + 19433 21388 12680 12684 19367 19367 0.06666764931219404 HLHLSGNCY 9 Unmodified _HLHLSGNCY_ 0 0 0 nc|ENSG00000131951|Q6ZRR7-2|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9;ENSG00000131951|ENST00000570145|LRRC9 nc|ENSG00000131951|Q6ZRR7-2|LRRC9 nc|ENSG00000131951|Q6ZRR7-2|LRRC9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2710571289062 2 522.240001 1042.46545 NaN NaN NaN NaN NaN NaN NaN 62.847 1 59.886 59.386 60.386 -2.9614 0 0 0 0.23411 1 12130 12130 13.508 1.8676 1 19434 3700 12681 12685 19368 19368 -0.05408513782549562 HLHTVQLRLQ 10 Unmodified _HLHTVQLRLQ_ 0 0 0 ENST00000497613.2_1_8:145658938-145666334:-|nuORF;nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL ENST00000497613.2_1_8:145658938-145666334:-|nuORF ENST00000497613.2_1_8:145658938-145666334:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.763427734375 2 622.864746 1243.71494 NaN NaN NaN NaN NaN NaN NaN 73.273 1 69.597 69.097 70.097 -3.6764 0 0 0 2.8426 1 13848 13848 0.69767 0.69628 1 19435 5275 12682 12686 19369 19369 0.10282992165502947 HLIEPLANA 9 Unmodified _HLIEPLANA_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25579833984375 2 489.274367 976.53418 0.15196 7.4352E-05 -0.051201 -2.5051E-05 0.10076 4.93E-05 489.2742674988709 94.909 0.8391 90.859 90.535 91.374 -4.0496 53 23 3 0 0 0 0.060164 1 18579 18579 67.344 46.89 1 8061700 19436 4065 12683 12687 19370 19370 0.04497473788808293 HLIEPLANA 9 Unmodified _HLIEPLANA_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27642822265625 2 489.274367 976.53418 0.27653 0.0001353 -0.043688 -2.1375E-05 0.23284 0.00011392 489.2742942097528 95.031 0.76787 90.84 90.51 91.278 -4.1912 52 21 4 0 0 0 0.022915 1 18129 18129 89.427 56.641 1 6508400 19437 4065 12683 12687 19371 19371 0.04497473788808293 HLIEPLANA 9 Unmodified _HLIEPLANA_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27569580078125 2 489.274367 976.53418 -0.23423 -0.0001146 0.29715 0.00014539 0.062921 3.0786E-05 489.27448258573384 94.808 0.79433 90.927 90.501 91.295 -3.881 55 22 3 0 0 0 0.060164 1 18185 18185 67.344 46.89 1 7361000 19438 4065 12683 12687 19372 19372 0.04497473788808293 HLIEPLANA 9 Unmodified _HLIEPLANA_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.274367 976.53418 0.01039 5.0836E-06 0.099166 4.852E-05 0.10956 5.3603E-05 489.2744104402594 91.246 0.73715 91.246 90.824 91.561 0 0.2781 2.4154E-05 NaN 89.427 39 20 2 NaN NaN NaN NaN 0 NaN NaN 0 6099200 19439 4065 12683 12687 0.04497473788808293 HLIHEVTKV 9 Unmodified _HLIHEVTKV_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB;ENST00000524437.5_1_11:62402291-62406896:-|nuORF nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20123291015625 3 359.213469 1074.61858 -0.23281 -8.363E-05 0.055988 2.0112E-05 -0.17683 -6.3518E-05 359.21345707451627 35.428 0.72488 35.428 35.064 35.789 0 74 20 5 0 0 0 0.5685 1 6517 6517 15.248 3.7538 1 45770000 19440 1764 12684 12688 19373 19373 0.0842542460554796 HLIHEVTKV 9 Unmodified _HLIHEVTKV_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB;ENST00000524437.5_1_11:62402291-62406896:-|nuORF nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2166748046875 3 359.213469 1074.61858 -0.62902 -0.00022595 0.18288 6.5694E-05 -0.44613 -0.00016026 359.2135111965102 37.723 0.76068 35.254 34.915 35.676 -2.4688 77 21 5 0 0 0 0.5685 1 6941 6941 15.248 7.6395 1 61274000 19441 1764 12684 12688 19374 19374 0.0842542460554796 HLIHEVTKV 9 Unmodified _HLIHEVTKV_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB;ENST00000524437.5_1_11:62402291-62406896:-|nuORF nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2062072753906 3 359.213469 1074.61858 0.081008 2.9099E-05 -0.6387 -0.00022943 -0.55769 -0.00020033 359.21322817223046 37.74 0.87581 35.393 35.063 35.939 -2.3479 76 24 5 0 0 0 0.35556 2 6697 6697;6701 24.564 17.087 1 58453000 19442 1764 12684 12688 19375;19376 19375 0.0842542460554796 HLIIVNADRT 10 Unmodified _HLIIVNADRT_ 0 0 0 REV__nc|ENSG00000134376|P82279-4|CRB1 REV__nc|ENSG00000134376|P82279-4|CRB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.330078125 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 168.82 1 164.03 163.53 164.53 -4.7898 0 0 0 2.8426 1 34150 34150 0.063865 0 1 + 19443 13578 12685 12689 19377 19377 0.07655908145943613 HLIRLFWRKTL 11 Unmodified _HLIRLFWRKTL_ 0 0 0 REV__ENST00000547611.5_1_12:95611639-95668525:+|nuORF REV__ENST00000547611.5_1_12:95611639-95668525:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3895874023438 2 741.956438 1481.89832 NaN NaN NaN NaN NaN NaN NaN 168.37 1 168.37 167.87 168.87 0 0 0 0 0.23698 1 34474 34474 1.4819 0.15237 1 + 19444 22907 12686 12690 19378 19378 0.17664965947142264 HLITMMAL 8 Unmodified _HLITMMAL_ 0 0 0 ENSG00000174016|ENST00000308293|TENT5D ENSG00000174016|ENST00000308293|TENT5D ENSG00000174016|ENST00000308293|TENT5D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.251708984375 2 465.250991 928.48743 NaN NaN NaN NaN NaN NaN NaN 172.43 1 167.55 167.05 168.05 -4.881 0 0 0 0.21486 1 34225 34225 10.183 0.83596 1 19445 6324 12687 12691 19379 19379 0.020325746416688162 HLKARIRAE 9 Unmodified _HLKARIRAE_ 0 0 0 nc|ENSG00000133393|Q96NB1-2|CEP20;ENSG00000133393|ENST00000255759|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7794189453125 2 547.333082 1092.65161 0.82758 0.00045296 -0.63501 -0.00034756 0.19257 0.0001054 547.3328548172075 29.4 0.42695 27.443 27.154 27.581 -1.9561 17 11 2 0 0 0 0.86532 1 5289 5289 8.5933 0 1 592680 19446 3799 12688 12692 19380 19380 0.10899051448268438 HLKMDSFYY 9 Unmodified _HLKMDSFYY_ 0 0 0 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2758178710938 2 602.278792 1202.54303 NaN NaN NaN NaN NaN NaN NaN 145.28 1 140.21 139.71 140.71 -5.0671 0 0 0 0.23508 1 28068 28068 5.2307 0 1 19447 26397 12689 12693 19381 19381 -0.05013920636997682 HLKNLYYKFRP 11 Unmodified _HLKNLYYKFRP_ 0 0 0 REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 493.6147766113281 3 493.613744 1477.8194 NaN NaN NaN NaN NaN NaN NaN 166.24 1 161.45 160.95 161.95 -4.7898 0 0 0 0.23698 1 33375 33375 2.6312 0.84881 1 + 19448 14437 12690 12694 19382 19382 0.09960693922175778 HLKRFSYNRYW 11 Unmodified _HLKRFSYNRYW_ 0 0 0 nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ARL8B-USP4|1|fusion;ENST00000485450.5_1_3:49315728-49349110:-|nuORF nc|ENSG00000114316|Q13107-2|USP4 nc|ENSG00000114316|Q13107-2|USP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.410400390625 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 12.134 1 12.134 11.634 12.634 0 0 0 0 0.23698 1 1667 1667 0.30703 0 1 19449 2783 12691 12695 19383 19383 0.0384173763131912 HLKRFSYNRYW 11 Unmodified _HLKRFSYNRYW_ 0 0 0 nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ARL8B-USP4|1|fusion;ENST00000485450.5_1_3:49315728-49349110:-|nuORF nc|ENSG00000114316|Q13107-2|USP4 nc|ENSG00000114316|Q13107-2|USP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4025268554688 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 102.64 1 102.64 102.14 103.14 0 0 0 0 0.22632 1 20161 20161 0.094841 0.094841 1 19450 2783 12691 12695 19384 19384 0.0384173763131912 HLKRFSYNRYW 11 Unmodified _HLKRFSYNRYW_ 0 0 0 nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ARL8B-USP4|1|fusion;ENST00000485450.5_1_3:49315728-49349110:-|nuORF nc|ENSG00000114316|Q13107-2|USP4 nc|ENSG00000114316|Q13107-2|USP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.408447265625 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 168.45 1 168.45 167.95 168.95 0 0 0 0 0.2367 1 34497 34497 2.9952 1.6657 1 19451 2783 12691 12695 19385 19385 0.0384173763131912 HLKRFSYNRYW 11 Unmodified _HLKRFSYNRYW_ 0 0 0 nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ARL8B-USP4|1|fusion;ENST00000485450.5_1_3:49315728-49349110:-|nuORF nc|ENSG00000114316|Q13107-2|USP4 nc|ENSG00000114316|Q13107-2|USP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4080810546875 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 169.76 1 164.83 164.33 165.33 -4.9295 0 0 0 0.23698 1 33534 33534 1.4819 0.15237 1 19452 2783 12691 12695 19386 19386 0.0384173763131912 HLKRFSYNRYW 11 Unmodified _HLKRFSYNRYW_ 0 0 0 nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ARL8B-USP4|1|fusion;ENST00000485450.5_1_3:49315728-49349110:-|nuORF nc|ENSG00000114316|Q13107-2|USP4 nc|ENSG00000114316|Q13107-2|USP4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.409912109375 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 158.74 1 153.47 152.97 153.97 -5.2712 0 0 0 0.23698 1 30799 30799 1.4819 0.15237 1 19453 2783 12691 12695 19387 19387 0.0384173763131912 HLKTHYKMEYK 11 Unmodified _HLKTHYKMEYK_ 0 0 0 ENST00000508784.5_1_4:146681933-146682710:-|nuORF ENST00000508784.5_1_4:146681933-146682710:-|nuORF ENST00000508784.5_1_4:146681933-146682710:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 739.5454711914062 2 739.384654 1476.75475 NaN NaN NaN NaN NaN NaN NaN 49.621 1 46.74 46.24 47.24 -2.8811 0 0 0 0.23698 1 9401 9401 1.3295 0 1 19454 10718 12692 12696 19388 19388 0.03544751053914297 HLKVDCGLIR 10 Unmodified _HLKVDCGLIR_ 0 0 0 REV__sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3 REV__sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 385.2070007324219 3 385.221859 1152.64375 NaN NaN NaN NaN NaN NaN NaN 14.67 1 13.497 12.997 13.997 -1.173 0 0 0 0.22588 1 2001 2001 1.9064 0.71303 1 + 19455 24669 12693 12697 19389 19389 0.07353156136468897 HLLAMHIQQL 10 Unmodified _HLLAMHIQQL_ 0 0 0 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.298095703125 2 602.336975 1202.6594 NaN NaN NaN NaN NaN NaN NaN 149.19 1 143.99 143.49 144.49 -5.1994 0 0 0 0.22588 1 28896 28896 7.9102 0.80843 1 19456 6171 12694 12698 19390 19390 0.06617442653532635 HLLARPVHS 9 Unmodified _HLLARPVHS_ 0 0 0 REV__ENST00000469444.6_1_2:172949561-172951418:+|nuORF REV__ENST00000469444.6_1_2:172949561-172951418:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 515.267333984375 2 515.30125 1028.58795 NaN NaN NaN NaN NaN NaN NaN 143.6 1 138.94 138.44 139.44 -4.656 0 0 0 0.23508 1 28405 28405 7.9102 2.6795 1 + 19457 22013 12695 12699 19391 19391 0.0747969101118997 HLLDNADVALA 11 Unmodified _HLLDNADVALA_ 0 0 0 nc|ENSG00000227059|E9PGG2|ANHX;ENSG00000227059|ENST00000545940|ANHX nc|ENSG00000227059|E9PGG2|ANHX nc|ENSG00000227059|E9PGG2|ANHX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.316650390625 2 576.306395 1150.59824 -0.074373 -4.2862E-05 0.057011 3.2856E-05 -0.017362 -1.0006E-05 576.3065812683702 44.333 1.8987 41.586 41.183 43.082 -2.7475 187 53 6 0 0 0 0.6353 1 8281 8281 16.149 0.41048 1 378110000 19458 7796 12696 12700 19392 19392 0.02896209155096585 HLLDSKVPSV 10 Unmodified _HLLDSKVPSV_ 0 0 0 ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7818603515625 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 87.578 1 83.851 83.351 84.351 -3.727 0 0 0 2.8426 1 17128 17128 12.228 11.383 1 19459 3731 12697 12701 19393 19393 0.0700970102309384 HLLDSKVPSV 10 Unmodified _HLLDSKVPSV_ 0 0 0 ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7928466796875 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 87.6 1 83.873 83.373 84.373 -3.727 0 0 0 0.11496 1 17132 17132 41.956 24.843 1 19460 3731 12697 12701 19394 19394 0.0700970102309384 HLLDSKVPSV 10 Unmodified _HLLDSKVPSV_ 0 0 0 ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.780029296875 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 87.554 1 83.803 83.303 84.303 -3.7501 0 0 0 2.8426 1 16752 16752 16.275 15.895 1 19461 3731 12697 12701 19395 19395 0.0700970102309384 HLLELQTLR 9 Unmodified _HLLELQTLR_ 0 0 0 REV__ENST00000415437.1_1_1:163132621-163176558:+|nuORF REV__ENST00000415437.1_1_1:163132621-163176558:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2081604003906 3 374.892507 1121.65569 -0.12167 -4.5613E-05 -0.34839 -0.00013061 -0.47006 -0.00017622 374.89241636138775 28.743 0.35344 28.743 28.561 28.914 0 16 9 2 0 0 0 0.5428 1 5134 5134 4.897 0 1 1278200 + 19462 21455 12698 12702 19396 19396 0.09973096151315985 HLLFKISND 9 Unmodified _HLLFKISND_ 0 0 0 ENST00000228811.8_2_12:10998545-10999891:-|nuORF ENST00000228811.8_2_12:10998545-10999891:-|nuORF ENST00000228811.8_2_12:10998545-10999891:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7921142578125 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 9.4123 1 8.3478 7.8478 8.8478 -1.0645 0 0 0 0.23508 1 1004 1004 0.52476 0 1 19463 8149 12699 12703 19397 19397 0.04757431851635374 HLLGPDYTE 9 Unmodified _HLLGPDYTE_ 0 0 0 ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant;nc|ENSG00000134028|O15204-2|ADAMDEC1;ENSG00000134028|ENST00000256412|ADAMDEC1 ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.265380859375 2 522.753464 1043.49238 0.19233 0.00010054 -0.14499 -7.5792E-05 0.047341 2.4748E-05 522.7536666326247 111.49 0.90563 111.49 111.1 112.01 0 45 25 2 0 0 0 0.76082 1 21981 21981 19.439 7.7987 1 2942500 19464 59 12700 12704 19398 19398 -0.027631266903881624 HLLGPDYTE 9 Unmodified _HLLGPDYTE_ 0 0 0 ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant;nc|ENSG00000134028|O15204-2|ADAMDEC1;ENSG00000134028|ENST00000256412|ADAMDEC1 ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2653198242188 2 522.753464 1043.49238 -0.40672 -0.00021261 0.17432 9.1126E-05 -0.2324 -0.00012149 522.7538674662507 115.77 0.99947 111.19 110.84 111.84 -4.5815 39 28 2 0 0 0 0.76082 1 22308 22308 19.439 7.7987 1 2824300 19465 59 12700 12704 19399 19399 -0.027631266903881624 HLLKKLKKS 9 Unmodified _HLLKKLKKS_ 0 0 0 REV__ENSG00000166153|ENST00000550587|DEPDC4 REV__ENSG00000166153|ENST00000550587|DEPDC4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.779052734375 2 547.874051 1093.73355 NaN NaN NaN NaN NaN NaN NaN 147.01 1 147.01 146.51 147.51 0 0 0 0 0.23508 1 29403 29403 2.3027 0.24298 1 + 19466 17829 12701 12705 19400 19400 0.19043153807365343 HLLLEERAEQR 11 Unmodified _HLLLEERAEQR_ 0 0 0 REV__ENSG00000166004|ENST00000325212|CEP295 REV__ENSG00000166004|ENST00000325212|CEP295 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24798583984375 3 465.256397 1392.74736 NaN NaN NaN NaN NaN NaN NaN 65.771 1 62.313 61.813 62.813 -3.4581 0 0 0 0.22632 1 12316 12316 1.4551 0 1 + 19467 17816 12702 12706 19401 19401 0.06669734777824488 HLLPSHFPA 9 Unmodified _HLLPSHFPA_ 0 0 0 ENST00000361113.9_1_19:11729024-11729201:+|nuORF ENST00000361113.9_1_19:11729024-11729201:+|nuORF ENST00000361113.9_1_19:11729024-11729201:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 340.15838623046875 3 340.187143 1017.5396 NaN NaN NaN NaN NaN NaN NaN 46.219 1 43.378 42.878 43.878 -2.8409 0 0 0 0.23508 1 8721 8721 5.7319 1.7875 1 19468 9020 12703 12707 19402 19402 0.03153197371273109 HLLQELSQV 9 Unmodified _HLLQELSQV_ 0 0 0 ENSG00000112877|ENST00000264935|CEP72;CEP72|p.E600K|1|0.09|ENSG00000112877|chr5:653007-653007|G/A|missense_variant;ENST00000512038.1_1_5:644392-653265:+|nuORF ENSG00000112877|ENST00000264935|CEP72 ENSG00000112877|ENST00000264935|CEP72 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2667236328125 2 533.798206 1065.58186 0.31703 0.00016923 -0.59581 -0.00031804 -0.27878 -0.00014881 533.7976458631306 121.63 0.42269 117.08 116.96 117.38 -4.5476 15 11 2 0 0 0 0.27865 1 23984 23984 41.84 20.303 1 2366300 19469 2715 12704 12708 19403 19403 0.05169127988983746 HLLQYNHRV 9 Unmodified _HLLQYNHRV_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2910461425781 3 393.884235 1178.63087 -0.068376 -2.6932E-05 -0.10398 -4.0956E-05 -0.17236 -6.7888E-05 393.8841910534216 34.359 0.47867 34.359 34.108 34.587 0 34 13 3 0 0 0 0.88211 1 6286 6286 2.9952 0 1 2399600 19470 3702 12705 12709 19404 19404 0.04870461068571785 HLLQYNHRV 9 Unmodified _HLLQYNHRV_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 393.884235 1178.63087 -0.61272 -0.00024134 0.50398 0.00019851 -0.10874 -4.283E-05 393.8843868342874 36.798 0.52192 34.33 34.117 34.639 -2.4688 -0.032359 0.00047292 NaN 2.9952 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2056600 19471 3702 12705 12709 0.04870461068571785 HLLQYNHRV 9 Unmodified _HLLQYNHRV_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 393.884235 1178.63087 0.10151 3.9981E-05 -0.28897 -0.00011382 -0.18747 -7.384E-05 393.88410554930095 36.76 0.44794 34.412 34.174 34.622 -2.3479 0.049958 -0.00046407 NaN 2.9952 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2197600 19472 3702 12705 12709 0.04870461068571785 HLLQYNHRV 9 Unmodified _HLLQYNHRV_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 393.884235 1178.63087 -0.33165 -0.00013063 0.21811 8.591E-05 -0.11354 -4.4722E-05 393.8843374573459 36.685 0.53095 34.348 34.132 34.663 -2.3375 -0.014202 0.00013512 NaN 2.9952 37 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1797400 19473 3702 12705 12709 0.04870461068571785 HLLRAFDQASS 11 Unmodified _HLLRAFDQASS_ 0 0 0 ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant;ANKRD34B|p.V479Sfs*11|1|0.27|ENSG00000189127|chr5:80558585-80558586|-/T|frameshift_variant;ENSG00000189127|ENST00000338682|ANKRD34B ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7584838867188 2 622.822744 1243.63093 NaN NaN NaN NaN NaN NaN NaN 153.4 1 153.4 152.9 153.9 0 0 0 0 0.22862 1 30736 30736 9.3831 0.40688 1 19474 162 12706 12710 19405 19405 0.01886416277943681 HLLRQVDY 8 Unmodified _HLLRQVDY_ 0 0 0 REV__nc|ENSG00000127831|P09327-2|VIL1 REV__nc|ENSG00000127831|P09327-2|VIL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2703857421875 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 81.046 1 81.046 80.546 81.546 0 0 0 0 0.22647 1 15781 15781 1.7423 0 1 + 19475 15897 12707 12711 19406 19406 0.03640278537386621 HLLRWRLL 8 Unmodified _HLLRWRLL_ 0 0 0 REV__nc|ENSG00000226807|Q6ZUA9|MROH5 REV__nc|ENSG00000226807|Q6ZUA9|MROH5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 553.8501586914062 2 553.85091 1105.68727 NaN NaN NaN NaN NaN NaN NaN 168.82 1 163.89 163.39 164.39 -4.9295 0 0 0 0.21486 1 33299 33299 6.3541 0.59368 1 + 19476 24279 12708 12712 19407 19407 0.13865133695935583 HLLSDWCSS 9 Unmodified _HLLSDWCSS_ 0 0 0 REV__ENSG00000154143|ENST00000284288|PANX3 REV__ENSG00000154143|ENST00000284288|PANX3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6910400390625 2 524.231842 1046.44913 0.06386 3.3477E-05 -2.2409 -0.0011748 -2.1771 -0.0011413 524.2297338127978 118.25 0.13513 113.75 113.7 113.83 -4.502 5 3 2 0 0 0 0.72864 1 23301 23301 23.148 11.508 1 864190 + 19477 17169 12709 12713 19408 19408 -0.07223639739322607 HLLSKTFCTFL 11 Unmodified _HLLSKTFCTFL_ 0 0 0 nc|ENSG00000156860|Q9HAH7-1|FBRS nc|ENSG00000156860|Q9HAH7-1|FBRS nc|ENSG00000156860|Q9HAH7-1|FBRS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2360534667969 3 437.237286 1308.69003 NaN NaN NaN NaN NaN NaN NaN 63.053 1 63.053 62.553 63.553 0 0 0 0 0.22671 1 12115 12115 10.899 7.8267 1 19478 12393 12710 12714 19409 19409 0.048031762479013196 HLLTPCFV 8 Unmodified _HLLTPCFV_ 0 0 0 ENST00000438969.2_1_7:137037323-137039163:-|nuORF ENST00000438969.2_1_7:137037323-137039163:-|nuORF ENST00000438969.2_1_7:137037323-137039163:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2489929199219 2 465.249306 928.484059 NaN NaN NaN NaN NaN NaN NaN 173.38 1 173.38 172.88 173.88 0 0 0 0 0.21486 1 35850 35850 10.183 1.5901 1 19479 9867 12711 12715 19410 19410 0.016956478592987878 HLLTRRQLPFL 11 Unmodified _HLLTRRQLPFL_ 0 0 0 ENST00000537403.5_1_14:39524417-39524492:-|nuORF ENST00000537403.5_1_14:39524417-39524492:-|nuORF ENST00000537403.5_1_14:39524417-39524492:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2464294433594 3 465.285739 1392.83539 NaN NaN NaN NaN NaN NaN NaN 177.62 1 172.75 172.25 173.25 -4.8686 0 0 0 0.23698 1 35349 35349 0.08335 0 1 19480 11036 12712 12716 19411 19411 0.1546840015912494 HLLWWCQRTQL 11 Unmodified _HLLWWCQRTQL_ 0 0 0 REV__ENST00000471252.1_1_Y:16634522-16634672:+|nuORF REV__ENST00000471252.1_1_Y:16634522-16634672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3836059570312 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 168.58 1 163.79 163.29 164.29 -4.7898 0 0 0 0.23264 1 34088 34088 6.2058 0.9089 1 + 19481 22036 12713 12717 19412 19412 0.03335590493611562 HLMRRLAA 8 Unmodified _HLMRRLAA_ 0 0 0 REV__ENST00000398922.6_1_11:62433120-62433833:+|nuORF REV__ENST00000398922.6_1_11:62433120-62433833:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 484.28692626953125 2 484.284546 966.554539 NaN NaN NaN NaN NaN NaN NaN 158.49 1 153.7 153.2 154.2 -4.7952 0 0 0 0.2343 1 31518 31518 0.063987 0 1 + 19482 19675 12714 12718 19413 19413 0.06992365967630576 HLMVHNLV 8 Unmodified _HLMVHNLV_ 0 0 0 ENSG00000140829|ENST00000268482|DHX38;DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant ENSG00000140829|ENST00000268482|DHX38 ENSG00000140829|ENST00000268482|DHX38 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7796936035156 2 481.765655 961.516756 NaN NaN NaN NaN NaN NaN NaN 155.43 1 150.18 149.68 150.68 -5.2526 0 0 0 0.23749 1 30142 30142 0.12286 0 1 19483 4326 12715 12719 19414 19414 0.03445854982169294 HLNGHIKQV 9 Unmodified _HLNGHIKQV_ 0 0 0 ENST00000465287.1_1_22:31737393-31739122:-|nuORF;nc|ENSG00000100105|Q9HBE1-4|PATZ1;ENST00000494109.1_1_22:31731618-31739122:-|nuORF;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1 ENST00000465287.1_1_22:31737393-31739122:-|nuORF ENST00000465287.1_1_22:31737393-31739122:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6982421875 2 523.298707 1044.58286 0.13195 6.905E-05 0.061247 3.2051E-05 0.1932 0.0001011 523.2986926659902 18.145 0.8018 18.145 17.952 18.754 0 35 22 4 0 0 0 0.025254 1 2896 2896 118.89 80.744 1 6332800 19484 10119 12716 12720 19415 19415 0.06235387148558402 HLNGHIKQV 9 Unmodified _HLNGHIKQV_ 0 0 0 ENST00000465287.1_1_22:31737393-31739122:-|nuORF;nc|ENSG00000100105|Q9HBE1-4|PATZ1;ENST00000494109.1_1_22:31731618-31739122:-|nuORF;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1 ENST00000465287.1_1_22:31737393-31739122:-|nuORF ENST00000465287.1_1_22:31737393-31739122:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.690673828125 2 523.298707 1044.58286 -0.89515 -0.00046843 0.87411 0.00045742 -0.021041 -1.101E-05 523.2991638040504 19.882 0.44858 18.247 18.049 18.498 -1.6351 27 12 3 0 0 0 0.27865 1 3060 3060 49.933 49.933 1 5252700 19485 10119 12716 12720 19416 19416 0.06235387148558402 HLNKNGLWYE 10 Unmodified _HLNKNGLWYE_ 0 0 0 REV__ENSG00000104760|ENST00000427924|FGL1 REV__ENSG00000104760|ENST00000427924|FGL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2380065917969 3 425.21565 1272.62512 -0.49865 -0.00021204 0.26762 0.0001138 -0.23103 -9.8237E-05 425.5502962874717 16.72 0.31626 15.504 15.388 15.705 -1.2159 12 8 2 0 0 0 0.91149 1 2660 2660 1.5923 0 1 1016800 + 19486 14941 12717 12721 19417 19417 -0.00028682233710242144 HLNLHINS 8 Unmodified _HLNLHINS_ 0 0 0 nc|ENSG00000237702|A0A576|TRBV3-1 nc|ENSG00000237702|A0A576|TRBV3-1 nc|ENSG00000237702|A0A576|TRBV3-1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1606140136719 3 316.506764 946.498464 0.052987 1.6771E-05 -0.12533 -3.9669E-05 -0.072347 -2.2898E-05 316.5066620983113 38.513 0.8749 36.071 35.74 36.615 -2.4419 40 24 2 0 0 0 1.0278 1 6796 6796 0.35063 0.081612 1 1218700 19487 12614 12718 12722 19418 19418 0.023074363318187352 HLNLHINS 8 Unmodified _HLNLHINS_ 0 0 0 nc|ENSG00000237702|A0A576|TRBV3-1 nc|ENSG00000237702|A0A576|TRBV3-1 nc|ENSG00000237702|A0A576|TRBV3-1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 316.506764 946.498464 -0.59416 -0.00018806 0.64911 0.00020545 0.054949 1.7392E-05 316.50690175304254 38.72 0.73379 36.171 35.837 36.571 -2.5491 0.093021 0.00027512 NaN 0.35063 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1149600 19488 12614 12718 12722 0.023074363318187352 HLNLHINS 8 Unmodified _HLNLHINS_ 0 0 0 nc|ENSG00000237702|A0A576|TRBV3-1 nc|ENSG00000237702|A0A576|TRBV3-1 nc|ENSG00000237702|A0A576|TRBV3-1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 316.506764 946.498464 -0.50629 -0.00016024 0.56662 0.00017934 0.060332 1.9095E-05 316.5068876422123 38.397 0.83819 35.992 35.742 36.58 -2.4049 -0.085944 0.0001968 NaN 0.35063 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 858730 19489 12614 12718 12722 0.023074363318187352 HLNSEKLIS 9 Unmodified _HLNSEKLIS_ 0 0 0 nc|ENSG00000138346|P51530-4|DNA2 nc|ENSG00000138346|P51530-4|DNA2 nc|ENSG00000138346|P51530-4|DNA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 521.1185913085938 2 520.790381 1039.56621 -0.83205 -0.00043332 1.3113 0.00068291 0.47925 0.00024959 520.7910758816452 20.317 0.63351 18.682 18.428 19.061 -1.6351 26 17 2 0 0 0 0.87511 1 3100 3100 1.6526 0 1 373600 19490 12352 12719 12723 19419 19419 0.04800841471956119 HLNSENQTV 9 Unmodified _HLNSENQTV_ 0 0 0 SLC39A10|p.R238Gfs*84|1|0.35|ENSG00000196950|chr2:195680745-195680745|A/-|frameshift_variant;ENSG00000196950|ENST00000359634|SLC39A10 SLC39A10|p.R238Gfs*84|1|0.35|ENSG00000196950|chr2:195680745-195680745|A/-|frameshift_variant SLC39A10|p.R238Gfs*84|1|0.35|ENSG00000196950|chr2:195680745-195680745|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 521.1185913085938 2 521.25162 1040.48869 -0.85855 -0.00044752 1.4558 0.00075886 0.5973 0.00031134 521.2520438737936 20.152 0.21203 18.517 18.428 18.64 -1.6351 7 5 2 0 0 0 0.87511 1 3100 3100 1.6526 0 1 615150 19491 7319 12720 12724 19420 19420 -0.02993796464238585 HLPAPDSH 8 Unmodified _HLPAPDSH_ 0 0 0 REV__sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2 REV__sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2156982421875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 176.27 1 171.48 170.98 171.98 -4.7898 0 0 0 0.21486 1 36042 36042 0.79363 0.10326 1 + 19492 24684 12721 12725 19421 19421 -0.027245144849530334 HLPDQLASV 9 Unmodified _HLPDQLASV_ 0 0 0 ENSG00000197417|ENST00000225519|SHPK ENSG00000197417|ENST00000225519|SHPK ENSG00000197417|ENST00000225519|SHPK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26416015625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 88.421 1 88.421 87.921 88.921 0 0 0 0 0.18489 1 17260 17260 17.113 14.47 1 19493 7365 12722 12726 19422 19422 0.023328834091330464 HLPHPWAL 8 Unmodified _HLPHPWAL_ 0 0 0 nc|ENSG00000185499|P15941-13|MUC1 nc|ENSG00000185499|P15941-13|MUC1 nc|ENSG00000185499|P15941-13|MUC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1806945800781 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 62.121 1 58.751 58.251 59.251 -3.3694 0 0 0 0.21486 1 11590 11590 4.3292 0 1 19494 12513 12723 12727 19423 19423 0.0324923206242147 HLPKCIATFG 10 Unmodified _HLPKCIATFG_ 0 0 0 REV__OR2W1|p.R122G|1|0.49|ENSG00000204704|chr6:29044812-29044812|G/C|missense_variant REV__OR2W1|p.R122G|1|0.49|ENSG00000204704|chr6:29044812-29044812|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7786865234375 2 543.791869 1085.56919 NaN NaN NaN NaN NaN NaN NaN 146.96 1 142.28 141.78 142.78 -4.6868 0 0 0 2.8426 1 29155 29155 0.26539 0 1 + 19495 24405 12724 12728 19424 19424 0.02982393325078192 HLPPARVRSQL 11 Unmodified _HLPPARVRSQL_ 0 0 0 REV__ENST00000544451.2_1_8:52811561-52811630:-|nuORF REV__ENST00000544451.2_1_8:52811561-52811630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.242919921875 3 425.254439 1272.74149 NaN NaN NaN NaN NaN NaN NaN 175.72 1 170.82 170.32 171.32 -4.9008 0 0 0 0.22632 1 35026 35026 0.50596 0.2991 1 + 19496 22881 12725 12729 19425 19425 0.11602681056842812 HLPPEVDI 8 Unmodified _HLPPEVDI_ 0 0 0 REV__ENSG00000107872|ENST00000369956|FBXL15 REV__ENSG00000107872|ENST00000369956|FBXL15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2469177246094 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 56.995 1 53.819 53.319 54.319 -3.1761 0 0 0 0.21486 1 10618 10618 11.114 0 1 + 19497 15096 12726 12730 19426 19426 0.01858096006139931 HLPYRFLP 8 Unmodified _HLPYRFLP_ 0 0 0 nc|ENSG00000130540|Q9BR01-2|SULT4A1;ENSG00000130540|ENST00000330884|SULT4A1 nc|ENSG00000130540|Q9BR01-2|SULT4A1 nc|ENSG00000130540|Q9BR01-2|SULT4A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 348.2006530761719 3 348.199272 1041.57599 NaN NaN NaN NaN NaN NaN NaN 57.799 1 54.548 54.048 55.048 -3.2517 0 0 0 0.21486 1 10735 10735 1.8442 0 1 19498 3615 12727 12731 19427 19427 0.05686074267987351 HLQAATPKGY 10 Unmodified _HLQAATPKGY_ 0 0 0 ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7894287109375 2 543.290548 1084.56654 0.67096 0.00036453 -0.35223 -0.00019136 0.31874 0.00017317 543.2902906983479 81.061 0.63638 81.061 80.733 81.369 0 35 17 3 0 0 0 0.67319 1 15742 15742 13.906 0.29118 1 6241500 19499 1172 12728 12732 19428 19428 0.027642611918281546 HLQARLDIL 9 Unmodified _HLQARLDIL_ 0 0 0 ENST00000584657.1_1_17:61908799-61909039:+|nuORF ENST00000584657.1_1_17:61908799-61909039:+|nuORF ENST00000584657.1_1_17:61908799-61909039:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2168273925781 3 360.217102 1077.62948 NaN NaN NaN NaN NaN NaN NaN 154.24 1 149.47 148.97 149.97 -4.7684 0 0 0 0.23508 1 30656 30656 4.897 0.36815 1 19500 11525 12729 12733 19429 19429 0.09376826979860198 HLQDKIQKL 9 Unmodified _HLQDKIQKL_ 0 0 0 ENST00000577292.5_1_17:73663452-73698652:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP ENST00000577292.5_1_17:73663452-73698652:+|nuORF ENST00000577292.5_1_17:73663452-73698652:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21588134765625 3 374.892507 1121.65569 -0.035603 -1.3347E-05 -0.13251 -4.9677E-05 -0.16811 -6.3025E-05 374.89241352747916 39.239 0.65408 39.239 38.99 39.644 0 43 18 3 0 0 0 0.026664 2 7310 7307;7310 67.838 18.781 1 6068900 19501 5291 12730 12734 19430;19431 19431 0.09973096151315985 HLQDKIQKL 9 Unmodified _HLQDKIQKL_ 0 0 0 ENST00000577292.5_1_17:73663452-73698652:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP ENST00000577292.5_1_17:73663452-73698652:+|nuORF ENST00000577292.5_1_17:73663452-73698652:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2161560058594 3 374.892507 1121.65569 -0.40269 -0.00015096 0.19535 7.3235E-05 -0.20734 -7.7729E-05 374.8925548752746 41.807 0.61757 39.172 38.881 39.499 -2.6348 49 17 4 0 0 0 0.25976 1 7796 7796 17.113 8.9574 1 8766300 19502 5291 12730 12734 19432 19432 0.09973096151315985 HLQDKIQKL 9 Unmodified _HLQDKIQKL_ 0 0 0 ENST00000577292.5_1_17:73663452-73698652:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP ENST00000577292.5_1_17:73663452-73698652:+|nuORF ENST00000577292.5_1_17:73663452-73698652:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2146911621094 3 374.892507 1121.65569 -0.054856 -2.0565E-05 -0.20965 -7.8595E-05 -0.2645 -9.916E-05 374.8924022309655 41.788 0.63518 39.137 38.829 39.464 -2.651 50 17 4 0 0 0 0.25976 1 7470 7470 17.113 8.9574 1 8222800 19503 5291 12730 12734 19433 19433 0.09973096151315985 HLQERVDKV 9 Unmodified _HLQERVDKV_ 0 0 0 ENSG00000161217|ENST00000431016|PCYT1A;PCYT1A|p.K281Sfs*19|1|0.32|ENSG00000161217|chr3:196239602-196239602|T/-|frameshift_variant ENSG00000161217|ENST00000431016|PCYT1A ENSG00000161217|ENST00000431016|PCYT1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2120666503906 3 375.212128 1122.61456 0.32089 0.0001204 -0.451 -0.00016922 -0.13011 -4.8817E-05 375.2119237011038 21.96 0.32374 20.485 20.303 20.626 -1.4742 26 8 4 0 0 0 0.51461 1 3721 3721 18.721 5.2026 1 2499000 19504 5286 12731 12735 19434 19434 0.05815335111856257 HLQERVDKV 9 Unmodified _HLQERVDKV_ 0 0 0 ENSG00000161217|ENST00000431016|PCYT1A;PCYT1A|p.K281Sfs*19|1|0.32|ENSG00000161217|chr3:196239602-196239602|T/-|frameshift_variant ENSG00000161217|ENST00000431016|PCYT1A ENSG00000161217|ENST00000431016|PCYT1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.212158203125 3 375.212128 1122.61456 -1.2871 -0.00048295 0.91899 0.00034482 -0.36814 -0.00013813 375.21250188285336 22.238 0.49087 20.512 20.285 20.776 -1.7257 32 13 4 0 0 0 0.51461 2 3503 3503;3544 18.721 8.957 1 2463700 19505 5286 12731 12735 19435;19436 19435 0.05815335111856257 HLQERVDKV 9 Unmodified _HLQERVDKV_ 0 0 0 ENSG00000161217|ENST00000431016|PCYT1A;PCYT1A|p.K281Sfs*19|1|0.32|ENSG00000161217|chr3:196239602-196239602|T/-|frameshift_variant ENSG00000161217|ENST00000431016|PCYT1A ENSG00000161217|ENST00000431016|PCYT1A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.212128 1122.61456 -0.1849 -6.9375E-05 -0.053604 -2.0113E-05 -0.2385 -8.9488E-05 375.2121050850193 20.397 0.42782 20.397 20.204 20.632 0 -0.064974 -7.921E-05 NaN 18.721 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2566200 19506 5286 12731 12735 0.05815335111856257 HLQESMPQ 8 Unmodified _HLQESMPQ_ 0 0 0 ENST00000507538.1_1_4:82380443-82392977:-|nuORF ENST00000507538.1_1_4:82380443-82392977:-|nuORF ENST00000507538.1_1_4:82380443-82392977:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.179931640625 3 323.820132 968.438566 -0.30713 -9.9454E-05 0.64477 0.00020879 0.33764 0.00010933 323.82028196733535 67.072 0.76855 63.963 63.618 64.387 -3.1086 36 21 2 0 0 0 1.0265 1 12945 12945 3.9444 0 1 3392900 19507 10701 12732 12736 19437 19437 -0.04691622393727357 HLQGLQRDL 9 Unmodified _HLQGLQRDL_ 0 0 0 ENSG00000162757|ENST00000294811|C1orf74;ENST00000604062.6_2_X:53152999-53153089:+|nuORF ENSG00000162757|ENST00000294811|C1orf74 ENSG00000162757|ENST00000294811|C1orf74 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013244628906 3 360.536724 1078.58834 NaN NaN NaN NaN NaN NaN NaN 63.359 1 60.361 59.861 60.861 -2.9975 0 0 0 0.23508 1 12241 12241 2.4985 0.41248 1 19508 5364 12733 12737 19438 19438 0.05219065940377732 HLQMLLNPE 9 Unmodified _HLQMLLNPE_ 0 0 0 ENST00000484394.5_1_X:152720945-152722644:-|nuORF;nc|ENSG00000213397|Q99871-3|HAUS7;ENSG00000213397|ENST00000370211|HAUS7;nc|ENSG00000213397|Q99871-2|HAUS7 ENST00000484394.5_1_X:152720945-152722644:-|nuORF ENST00000484394.5_1_X:152720945-152722644:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7844848632812 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 160.69 1 155.46 154.96 155.96 -5.2299 0 0 0 0.18525 1 31205 31205 0.12781 0 1 19509 7693 12734 12738 19439 19439 0.015977855998926316 HLQRKKLAT 9 Unmodified _HLQRKKLAT_ 0 0 0 REV__ENSG00000019505|ENST00000020926|SYT13 REV__ENSG00000019505|ENST00000020926|SYT13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7738647460938 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.2856 1 8.4914 7.9914 8.9914 -0.79424 0 0 0 0.23508 1 1058 1058 0.52476 0 1 + 19510 13976 12735 12739 19440 19440 0.12892222108098395 HLQSYSLPP 9 Unmodified _HLQSYSLPP_ 0 0 0 ENSG00000136738|ENST00000377524|STAM ENSG00000136738|ENST00000377524|STAM ENSG00000136738|ENST00000377524|STAM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2747192382812 2 521.271824 1040.5291 -0.36719 -0.0001914 0.39862 0.00020779 0.031437 1.6387E-05 521.2719425872077 50.327 0.81243 47.446 47.045 47.857 -2.8811 72 22 4 0 0 0 0.46541 1 9502 9502 21.747 4.8044 1 21510000 19511 4035 12736 12740 19441 19441 0.010451699261921021 HLQSYSLPP 9 Unmodified _HLQSYSLPP_ 0 0 0 ENSG00000136738|ENST00000377524|STAM ENSG00000136738|ENST00000377524|STAM ENSG00000136738|ENST00000377524|STAM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2748413085938 2 521.271824 1040.5291 -0.67683 -0.00035281 0.73308 0.00038214 0.056251 2.9322E-05 521.2721328260485 50.556 0.9263 47.511 47.089 48.015 -3.0453 75 26 4 0 0 0 0.46541 1 9228 9228 21.747 1.293 1 19791000 19512 4035 12736 12740 19442 19442 0.010451699261921021 HLQSYSLPP 9 Unmodified _HLQSYSLPP_ 0 0 0 ENSG00000136738|ENST00000377524|STAM ENSG00000136738|ENST00000377524|STAM ENSG00000136738|ENST00000377524|STAM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2572631835938 2 521.271824 1040.5291 -0.019305 -1.0063E-05 0.16229 8.4599E-05 0.14299 7.4536E-05 521.271786049085 50.47 1.0983 47.418 46.964 48.062 -3.0517 84 31 4 0 0 0 0.55979 1 9205 9205 15.847 1.0089 1 16968000 19513 4035 12736 12740 19443 19443 0.010451699261921021 HLRDGFLAD 9 Unmodified _HLRDGFLAD_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2695922851562 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 95.054 1 91.005 90.505 91.505 -4.0496 0 0 0 0.18489 1 18629 18629 0.37959 0 1 19514 5248;4855 12737 12741 19444 19444 3.4016406743830885E-05 HLRGWYQRAS 10 Unmodified _HLRGWYQRAS_ 0 0 0 nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2424011230469 3 425.223139 1272.64759 -0.0054914 -2.3351E-06 -0.82899 -0.00035251 -0.83448 -0.00035484 425.22278754737357 14.859 0.28289 14.859 14.735 15.018 0 25 7 4 0 0 0 0.91149 1 2263 2263 3.5871 0.5148 1 12962000 19515 2797 12738 12742 19445 19445 0.022169619545593378 HLRGWYQRAS 10 Unmodified _HLRGWYQRAS_ 0 0 0 nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 425.223139 1272.64759 -0.56661 -0.00024094 -0.29675 -0.00012618 -0.86336 -0.00036712 425.2230131115431 16.021 0.31149 14.799 14.644 14.955 -1.2219 -0.007446 0.00024299 NaN 3.5871 26 8 4 NaN NaN NaN NaN 0 NaN NaN 0 9552400 19516 2797 12738 12742 0.022169619545593378 HLRHCHQR 8 Unmodified _HLRHCHQR_ 0 0 0 ENST00000344651.4_1_12:121158187-121158331:+|nuORF ENST00000344651.4_1_12:121158187-121158331:+|nuORF ENST00000344651.4_1_12:121158187-121158331:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7759399414062 2 543.777951 1085.54135 NaN NaN NaN NaN NaN NaN NaN 174.65 1 169.75 169.25 170.25 -4.8916 0 0 0 0.2343 1 34777 34777 0.12286 0 1 19517 8890 12739 12743 19446 19446 0.0019992790823835094 HLRLLREI 8 Unmodified _HLRLLREI_ 0 0 0 ENST00000359513.8_1_11:46667456-46670726:+|nuORF ENST00000359513.8_1_11:46667456-46670726:+|nuORF ENST00000359513.8_1_11:46667456-46670726:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 350.1957702636719 3 350.557459 1048.65055 -0.25721 -9.0167E-05 0.32802 0.00011499 0.070806 2.4821E-05 350.5575345312317 36.358 0.56657 36.358 36.213 36.779 0 31 15 3 0 0 0 1.0276 1 6681 6681 0.45834 0 1 1261100 19518 9001 12740 12744 19447 19447 0.12816837079390098 HLRLLREI 8 Unmodified _HLRLLREI_ 0 0 0 ENST00000359513.8_1_11:46667456-46670726:+|nuORF ENST00000359513.8_1_11:46667456-46670726:+|nuORF ENST00000359513.8_1_11:46667456-46670726:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 350.557459 1048.65055 -0.5894 -0.00020662 0.7649 0.00026814 0.1755 6.1523E-05 350.5576637665185 38.87 0.41619 36.321 36.05 36.466 -2.5491 -0.00082152 0.00030074 NaN 0.45834 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2871100 19519 9001 12740 12744 0.12816837079390098 HLRLLREI 8 Unmodified _HLRLLREI_ 0 0 0 ENST00000359513.8_1_11:46667456-46670726:+|nuORF ENST00000359513.8_1_11:46667456-46670726:+|nuORF ENST00000359513.8_1_11:46667456-46670726:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 350.557459 1048.65055 0.047656 1.6706E-05 0.067763 2.3755E-05 0.11542 4.0461E-05 350.5574560336644 38.784 0.56413 36.342 36.018 36.582 -2.4419 0.020811 -0.00043242 NaN 0.45834 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2623800 19520 9001 12740 12744 0.12816837079390098 HLRLLREI 8 Unmodified _HLRLLREI_ 0 0 0 ENST00000359513.8_1_11:46667456-46670726:+|nuORF ENST00000359513.8_1_11:46667456-46670726:+|nuORF ENST00000359513.8_1_11:46667456-46670726:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 350.557459 1048.65055 -0.51232 -0.0001796 0.74704 0.00026188 0.23472 8.2281E-05 350.55765756777447 38.67 0.59708 36.265 35.913 36.51 -2.4049 -0.056743 0.00028195 NaN 0.45834 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2357200 19521 9001 12740 12744 0.12816837079390098 HLRRRRQWVKW 11 Unmodified _HLRRRRQWVKW_ 0 0 0 REV__ENST00000509200.5_1_17:47574227-47574383:+|nuORF REV__ENST00000509200.5_1_17:47574227-47574383:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3892822265625 2 810.976559 1619.93856 NaN NaN NaN NaN NaN NaN NaN 160.2 1 160.2 159.7 160.7 0 0 0 0 0.23698 1 32166 32166 0.30703 0.30703 1 + 19522 22524 12741 12745 19448 19448 0.15339325390300473 HLRRRRQWVKW 11 Unmodified _HLRRRRQWVKW_ 0 0 0 REV__ENST00000509200.5_1_17:47574227-47574383:+|nuORF REV__ENST00000509200.5_1_17:47574227-47574383:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3846435546875 2 810.976559 1619.93856 NaN NaN NaN NaN NaN NaN NaN 165.66 1 165.66 165.16 166.16 0 0 0 0 0.23698 1 33643 33643 0.30703 0 1 + 19523 22524 12741 12745 19449 19449 0.15339325390300473 HLSAPALLSA 10 Unmodified _HLSAPALLSA_ 0 0 0 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2;ENSG00000152527|ENST00000282406|PLEKHH2 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2624206542969 2 490.282192 978.549831 0.23457 0.00011501 0.30832 0.00015116 0.54289 0.00026617 490.28225599885866 35.88 0.49025 33.627 33.433 33.923 -2.2527 21 13 2 0 0 0 0.20847 1 6347 6347 43.858 5.8843 1 1819800 19524 4929 12742 12746 19450 19450 0.05969760305845284 HLSAPALLSA 10 Unmodified _HLSAPALLSA_ 0 0 0 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2;ENSG00000152527|ENST00000282406|PLEKHH2 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25994873046875 2 490.282192 978.549831 0.055124 2.7026E-05 0.59948 0.00029391 0.6546 0.00032094 490.28246720567864 35.927 0.45409 33.65 33.386 33.84 -2.2766 22 12 2 0 0 0 0.33677 1 6347 6347 41.84 15.571 1 1667400 19525 4929 12742 12746 19451 19451 0.05969760305845284 HLSAPALLSA 10 Unmodified _HLSAPALLSA_ 0 0 0 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2;ENSG00000152527|ENST00000282406|PLEKHH2 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 490.282192 978.549831 0.1877 9.2027E-05 0.74169 0.00036364 0.92939 0.00045566 490.28256010301044 33.951 0.55402 33.951 33.69 34.244 0 0.2529 0.00017878 NaN 43.858 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 936390 19526 4929 12742 12746 0.05969760305845284 HLSAPALLSA 10 Unmodified _HLSAPALLSA_ 0 0 0 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2;ENSG00000152527|ENST00000282406|PLEKHH2 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 490.282192 978.549831 -0.27853 -0.00013656 0.67263 0.00032978 0.3941 0.00019322 490.2824438321771 35.957 0.38741 33.563 33.381 33.768 -2.3938 -0.13449 0.00011107 NaN 43.858 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1914000 19527 4929 12742 12746 0.05969760305845284 HLSDSQEDI 9 Unmodified _HLSDSQEDI_ 0 0 0 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2615966796875 2 522.235635 1042.45672 NaN NaN NaN NaN NaN NaN NaN 56.089 1 56.089 55.589 56.589 0 0 0 0 0.23508 1 10710 10710 10.824 2.2306 1 19528 1535 12743 12747 19452 19452 -0.06281208938025884 HLSEHLSS 8 Unmodified _HLSEHLSS_ 0 0 0 REV__TMF1|p.E162Gfs*11|1|0.04|ENSG00000144747|chr3:69048220-69048221|-/C|frameshift_variant REV__TMF1|p.E162Gfs*11|1|0.04|ENSG00000144747|chr3:69048220-69048221|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 455.2435302734375 2 455.224874 908.435195 -1.2391 -0.00056408 1.3601 0.00061916 0.121 5.5083E-05 455.2254954822532 18.118 0.27424 16.603 16.472 16.746 -1.5148 11 7 2 0 0 0 0.64227 1 2664 2664 19.439 4.8573 1 380300 + 19529 16800 12744 12748 19453 19453 -0.02268549176073975 HLSEHLSS 8 Unmodified _HLSEHLSS_ 0 0 0 REV__TMF1|p.E162Gfs*11|1|0.04|ENSG00000144747|chr3:69048220-69048221|-/C|frameshift_variant REV__TMF1|p.E162Gfs*11|1|0.04|ENSG00000144747|chr3:69048220-69048221|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 455.224874 908.435195 0.18108 8.2432E-05 0.18105 8.242E-05 0.36213 0.00016485 455.22478679316225 16.762 0.23974 16.762 16.647 16.887 0 0.079582 -0.00075722 NaN 19.439 12 6 3 NaN NaN NaN NaN 0 NaN NaN 0 986110 + 19530 16800 12744 12748 -0.02268549176073975 HLSEHLSS 8 Unmodified _HLSEHLSS_ 0 0 0 REV__TMF1|p.E162Gfs*11|1|0.04|ENSG00000144747|chr3:69048220-69048221|-/C|frameshift_variant REV__TMF1|p.E162Gfs*11|1|0.04|ENSG00000144747|chr3:69048220-69048221|-/C|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 455.224874 908.435195 -1.2391 -0.00056408 1.3601 0.00061916 0.121 5.5083E-05 455.2254954822532 18.118 0.27424 16.603 16.472 16.746 -1.5148 -0.079582 0.00031627 NaN 19.439 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 380300 + 19531 16800 12744 12748 -0.02268549176073975 HLSIDALRTV 10 Unmodified _HLSIDALRTV_ 0 0 0 REV__nc|ENSG00000125485|Q9H8H2-2|DDX31 REV__nc|ENSG00000125485|Q9H8H2-2|DDX31 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21319580078125 3 375.552262 1123.63496 0.29805 0.00011193 -0.56652 -0.00021276 -0.26847 -0.00010082 375.55198190339667 31.322 0.38677 29.295 29.093 29.48 -2.0264 25 10 3 0 0 0 0.89335 1 5425 5425 8.9762 0.53194 1 2463400 + 19532 24024 12745 12749 19454 19454 0.07808505771663476 HLSLKKQFM 9 Unmodified _HLSLKKQFM_ 0 0 0 REV__IFFO1|p.R364Afs*19|1|0.41|ENSG00000010295|chr12:6548807-6548808|-/C|frameshift_variant REV__IFFO1|p.R364Afs*19|1|0.41|ENSG00000010295|chr12:6548807-6548808|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.14923095703125 3 377.882955 1130.62703 NaN NaN NaN NaN NaN NaN NaN 54.051 1 51.167 50.667 51.667 -2.8837 0 0 0 0.23508 1 10306 10306 5.2969 0 1 + 19533 13919 12746 12750 19455 19455 0.06694655250544201 HLSNIPPSV 9 Unmodified _HLSNIPPSV_ 0 0 0 nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;ENST00000586944.5_1_19:807712-810823:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1 nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-7|PTBP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78656005859375 2 482.266542 962.51853 0.223 0.00010754 -0.21826 -0.00010526 0.0047353 2.2837E-06 482.26629331794317 74.478 2.5669 70.801 69.721 72.288 -3.6764 129 73 3 0 0 0 0.23492 1 14085 14085 38.176 0 1 2291700 19534 3067 12747 12751 19456 19456 0.03577187271764615 HLSNLPHSG 9 Unmodified _HLSNLPHSG_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.771728515625 2 481.246141 960.477728 -0.2418 -0.00011637 -1.0285 -0.00049496 -1.2703 -0.00061133 481.2457750844234 69.81 0.32495 69.81 69.707 70.032 0 10 8 2 0 0 0 0.5059 1 13544 13544 19.257 1.122 1 481750 19535 1111 12748 12752 19457 19457 -0.004091540478498246 HLSPLGCF 8 Unmodified _HLSPLGCF_ 0 0 0 REV__ENSG00000205108|ENST00000378788|FAM205A REV__ENSG00000205108|ENST00000378788|FAM205A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2173156738281 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 66.381 1 63.054 62.554 63.554 -3.3268 0 0 0 0.21323 1 12496 12496 14.582 4.3983 1 + 19536 19580 12749 12753 19458 19458 -0.01985498208887293 HLSQQLAA 8 Unmodified _HLSQQLAA_ 0 0 0 SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant;SALL1|p.V965Sfs*11|1|0.18|ENSG00000103449|chr16:51139330-51139331|-/G|frameshift_variant;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENSG00000103449|ENST00000251020|SALL1;SALL1|p.A297V|1|0.19|ENSG00000103449|chr16:51141332-51141332|G/A|missense_variant;SALL1|p.A362Pfs*19|1|0.3|ENSG00000103449|chr16:51141138-51141138|C/-|frameshift_variant;SALL1|p.T412Nfs*26|1|0.26|ENSG00000103449|chr16:51140987-51140988|-/T|frameshift_variant SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2250671386719 2 434.237784 866.461016 0.21227 9.2176E-05 0.0090491 3.9295E-06 0.22132 9.6105E-05 434.2383053195421 26.086 3.5271 26.086 25.494 29.021 0 295 101 6 0 0 0 0.73936 1 4520 4520 8.5933 0 1 1081000000 19537 2192 12750 12754 19459 19459 0.022443450661853603 HLSQQLAA 8 Unmodified _HLSQQLAA_ 0 0 0 SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant;SALL1|p.V965Sfs*11|1|0.18|ENSG00000103449|chr16:51139330-51139331|-/G|frameshift_variant;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENSG00000103449|ENST00000251020|SALL1;SALL1|p.A297V|1|0.19|ENSG00000103449|chr16:51141332-51141332|G/A|missense_variant;SALL1|p.A362Pfs*19|1|0.3|ENSG00000103449|chr16:51141138-51141138|C/-|frameshift_variant;SALL1|p.T412Nfs*26|1|0.26|ENSG00000103449|chr16:51140987-51140988|-/T|frameshift_variant SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 434.237784 866.461016 0.71567 0.00031077 -0.49425 -0.00021462 0.22142 9.6149E-05 434.23806610421485 27.883 2.859 25.927 25.386 28.245 -1.9561 -0.074564 -0.00040279 NaN 8.5933 234 81 6 NaN NaN NaN NaN 0 NaN NaN 0 764840000 19538 2192 12750 12754 0.022443450661853603 HLSQQLAA 8 Unmodified _HLSQQLAA_ 0 0 0 SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant;SALL1|p.V965Sfs*11|1|0.18|ENSG00000103449|chr16:51139330-51139331|-/G|frameshift_variant;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENSG00000103449|ENST00000251020|SALL1;SALL1|p.A297V|1|0.19|ENSG00000103449|chr16:51141332-51141332|G/A|missense_variant;SALL1|p.A362Pfs*19|1|0.3|ENSG00000103449|chr16:51141138-51141138|C/-|frameshift_variant;SALL1|p.T412Nfs*26|1|0.26|ENSG00000103449|chr16:51140987-51140988|-/T|frameshift_variant SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 434.237784 866.461016 0.19838 8.6146E-05 0.1767 7.6732E-05 0.37509 0.00016288 434.2384381838904 27.772 5.4372 26.017 25.37 30.807 -1.7552 0.015288 0.00017992 NaN 8.5933 373 154 6 NaN NaN NaN NaN 0 NaN NaN 0 975260000 19539 2192 12750 12754 0.022443450661853603 HLSQQLAA 8 Unmodified _HLSQQLAA_ 0 0 0 SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant;SALL1|p.V965Sfs*11|1|0.18|ENSG00000103449|chr16:51139330-51139331|-/G|frameshift_variant;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENSG00000103449|ENST00000251020|SALL1;SALL1|p.A297V|1|0.19|ENSG00000103449|chr16:51141332-51141332|G/A|missense_variant;SALL1|p.A362Pfs*19|1|0.3|ENSG00000103449|chr16:51141138-51141138|C/-|frameshift_variant;SALL1|p.T412Nfs*26|1|0.26|ENSG00000103449|chr16:51140987-51140988|-/T|frameshift_variant SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 434.237784 866.461016 0.062419 2.7105E-05 0.29691 0.00012893 0.35933 0.00015604 434.23845236850406 27.972 5.4202 25.976 25.396 30.816 -1.9962 -0.025593 0.00028432 NaN 8.5933 373 154 6 NaN NaN NaN NaN 0 NaN NaN 0 716550000 19540 2192 12750 12754 0.022443450661853603 HLSQTGITA 9 Unmodified _HLSQTGITA_ 0 0 0 REV__CHRNA4|p.S396I|1|0.3|ENSG00000101204|chr20:63350224-63350224|C/A|missense_variant REV__CHRNA4|p.S396I|1|0.3|ENSG00000101204|chr20:63350224-63350224|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2591857910156 2 464.248349 926.482145 -0.08553 -3.9707E-05 -0.018023 -8.3673E-06 -0.10355 -4.8074E-05 464.24827390518686 41.362 1.2634 38.822 38.348 39.611 -2.5398 81 35 4 0 0 0 0.62314 1 7354 7354 11.495 2.7493 1 10123000 + 19541 13430 12751 12755 19460 19460 0.015963103750436858 HLSRRQRNKRY 11 Unmodified _HLSRRQRNKRY_ 0 0 0 MMP24|p.R151Q|1|0.06|ENSG00000125966|chr20:35251961-35251961|G/A|missense_variant MMP24|p.R151Q|1|0.06|ENSG00000125966|chr20:35251961-35251961|G/A|missense_variant MMP24|p.R151Q|1|0.06|ENSG00000125966|chr20:35251961-35251961|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 505.5032043457031 3 505.290546 1512.84981 NaN NaN NaN NaN NaN NaN NaN 162.87 1 162.87 162.37 163.37 0 0 0 0 0.22632 1 32779 32779 1.4551 0 1 19542 12151 12752 12756 19461 19461 0.11389865359979012 HLTITRWR 8 Unmodified _HLTITRWR_ 0 0 0 CEP170|p.R1403W|1|0.2|ENSG00000143702|chr1:243139960-243139960|G/A|missense_variant CEP170|p.R1403W|1|0.2|ENSG00000143702|chr1:243139960-243139960|G/A|missense_variant CEP170|p.R1403W|1|0.2|ENSG00000143702|chr1:243139960-243139960|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.21551513671875 3 361.545442 1081.6145 -1.6067 -0.00058091 0.38922 0.00014072 -1.2175 -0.00044019 361.54557140521285 20.046 0.62362 18.411 18.227 18.851 -1.6351 45 17 4 0 0 0 0.89276 1 3031 3031 0.62683 0.50396 1 19991000 19543 489 12753 12757 19462 19462 0.07695379902520472 HLTKHKKY 8 Unmodified _HLTKHKKY_ 0 0 0 ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.209716796875 3 352.210059 1053.60835 NaN NaN NaN NaN NaN NaN NaN 53.119 1 53.119 52.619 53.619 0 0 0 0 0.22847 1 10109 10109 0.25148 0.2222 1 19544 26592 12754 12758 19463 19463 0.08368861670987826 HLTKHKKY 8 Unmodified _HLTKHKKY_ 0 0 0 ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 352.2105712890625 3 352.210059 1053.60835 NaN NaN NaN NaN NaN NaN NaN 56.139 1 53.245 52.745 53.745 -2.8944 0 0 0 0.22847 1 10751 10751 0.25148 0.2222 1 19545 26592 12754 12758 19464 19464 0.08368861670987826 HLTKHKKY 8 Unmodified _HLTKHKKY_ 0 0 0 ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 352.2097473144531 3 352.210059 1053.60835 NaN NaN NaN NaN NaN NaN NaN 56.679 1 53.489 52.989 53.989 -3.1895 0 0 0 0.22847 1 10511 10511 0.68139 0.27313 1 19546 26592 12754 12758 19465 19465 0.08368861670987826 HLTKHKKY 8 Unmodified _HLTKHKKY_ 0 0 0 ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 352.205322265625 3 352.210059 1053.60835 NaN NaN NaN NaN NaN NaN NaN 56.265 1 53.089 52.589 53.589 -3.1761 0 0 0 0.22847 1 10465 10465 0.25148 0.2222 1 19547 26592 12754 12758 19466 19466 0.08368861670987826 HLTLPMIDLV 10 Unmodified _HLTLPMIDLV_ 0 0 0 REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3209838867188 2 576.328285 1150.64202 NaN NaN NaN NaN NaN NaN NaN 158.47 1 153.2 152.7 153.7 -5.2712 0 0 0 0.22588 1 30747 30747 6.2058 0.47393 1 + 19548 14534 12755 12759 19467 19467 0.07272102327874563 HLTPPPPD 8 Unmodified _HLTPPPPD_ 0 0 0 BLK|p.T155Pfs*10|1|0.32|ENSG00000136573|chr8:11550251-11550251|A/-|frameshift_variant;BLK|p.R238Gfs*27|1|0.27|ENSG00000136573|chr8:11555420-11555420|C/-|frameshift_variant;ENSG00000136573|ENST00000259089|BLK;BLK|p.L56M|1|0.42|ENSG00000136573|chr8:11546094-11546094|C/A|missense_variant BLK|p.T155Pfs*10|1|0.32|ENSG00000136573|chr8:11550251-11550251|A/-|frameshift_variant BLK|p.T155Pfs*10|1|0.32|ENSG00000136573|chr8:11550251-11550251|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23626708984375 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 57.148 1 53.972 53.472 54.472 -3.1761 0 0 0 0.19492 1 10645 10645 26.341 9.2547 1 19549 322 12756 12760 19468 19468 -0.0021045968237558554 HLTPWLRWA 9 Unmodified _HLTPWLRWA_ 0 0 0 REV__nc|ENSG00000113971|Q7Z494-6|NPHP3 REV__nc|ENSG00000113971|Q7Z494-6|NPHP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2564086914062 2 590.324725 1178.6349 NaN NaN NaN NaN NaN NaN NaN 137.68 1 137.68 137.18 138.18 0 0 0 0 0.19632 1 27312 27312 0.0033805 0 1 + 19550 15358 12757 12761 19469 19469 0.052725505623357094 HLTPYINW 8 Unmodified _HLTPYINW_ 0 0 0 nc|ENSG00000186976|Q5THR3-5|EFCAB6;nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-3|EFCAB6 nc|ENSG00000186976|Q5THR3-5|EFCAB6 nc|ENSG00000186976|Q5THR3-5|EFCAB6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2711181640625 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 51.842 1 48.797 48.297 49.297 -3.0453 0 0 0 0.21452 1 9527 9527 13.508 4.1604 1 19551 7087 12758 12762 19470 19470 0.004054911343473577 HLTRTSLASP 10 Unmodified _HLTRTSLASP_ 0 0 0 REV__nc|nan|Q6P1X6-2|C8orf82 REV__nc|nan|Q6P1X6-2|C8orf82 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2849731445312 2 541.80128 1081.58801 0.14908 8.0771E-05 0.075681 4.1004E-05 0.22476 0.00012177 541.8012876653979 26.693 0.33772 24.771 24.609 24.947 -1.9222 15 9 2 0 0 0 0.88533 1 4426 4426 5.2969 0 1 816610 + 19552 20502 12759 12763 19471 19471 0.050476462205324424 HLTSLSQTFNY 11 Unmodified _HLTSLSQTFNY_ 0 0 0 ENSG00000221909|ENST00000449309|FAM200A ENSG00000221909|ENST00000449309|FAM200A ENSG00000221909|ENST00000449309|FAM200A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2303161621094 3 437.550698 1309.63027 -0.12381 -5.4172E-05 0.12534 5.4843E-05 0.0015329 6.7071E-07 437.5506654049202 41.475 1.2708 38.986 38.386 39.657 -2.4896 31 14 3 0 0 0 0.80038 1 7424 7424 3.5927 0.52041 1 1964400 19553 7764 12760 12764 19472 19472 -0.012164231617589394 HLTTDKITH 9 Unmodified _HLTTDKITH_ 0 0 0 nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.0743408203125 3 355.861096 1064.56146 0.037098 1.3202E-05 -1.9746 -0.00070267 -1.9375 -0.00068946 355.8610896541831 50.102 0.7817 47.103 46.654 47.436 -2.999 34 22 2 0 0 0 0.87788 1 9097 9097 1.1933 0.12188 1 953710 19554 7687 12761 12765 19473 19473 0.031759573291765264 HLTTDKITH 9 Unmodified _HLTTDKITH_ 0 0 0 nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 355.861096 1064.56146 -0.3929 -0.00013982 0.2448 8.7117E-05 -0.1481 -5.2703E-05 355.86113448435134 49.839 0.48928 46.958 46.729 47.218 -2.8811 -0.017802 6.644E-05 NaN 1.1933 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1354300 19555 7687 12761 12765 0.031759573291765264 HLTTDKITH 9 Unmodified _HLTTDKITH_ 0 0 0 nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 355.861096 1064.56146 -0.75862 -0.00026996 0.38907 0.00013845 -0.36955 -0.00013151 355.8613156917867 49.873 0.44324 46.866 46.599 47.042 -3.0068 -0.10935 0.00022045 NaN 1.1933 22 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1617400 19556 7687 12761 12765 0.031759573291765264 HLVFPEPE 8 Unmodified _HLVFPEPE_ 0 0 0 REV__ENSG00000198723|ENST00000361664|TEX45 REV__ENSG00000198723|ENST00000361664|TEX45 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1602478027344 3 323.167637 966.481082 NaN NaN NaN NaN NaN NaN NaN 63.256 1 60.259 59.759 60.759 -2.9975 0 0 0 0.21486 1 12219 12219 3.9444 0 1 + 19557 19440 12762 12766 19474 19474 -0.0034990399385605997 HLVKGVRKGT 10 Unmodified _HLVKGVRKGT_ 0 0 0 REV__ENSG00000075914|ENST00000265564|EXOSC7 REV__ENSG00000075914|ENST00000265564|EXOSC7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7738647460938 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.2734 1 8.4792 7.9792 8.9792 -0.79424 0 0 0 2.8426 1 1056 1056 0.13989 0 1 + 19558 14340 12763 12767 19475 19475 0.12892222108098395 HLVKKALRVLP 11 Unmodified _HLVKKALRVLP_ 0 0 0 nc|ENSG00000115607|O95256-2|IL18RAP;IL18RAP|p.M555Cfs*7|1|0.07|ENSG00000115607|chr2:102452041-102452041|A/-|frameshift_variant;ENSG00000115607|ENST00000687160|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2478942871094 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 28.987 1 28.987 28.487 29.487 0 0 0 0 0.23698 1 5165 5165 0.50596 0 1 19559 2872 12764 12768 19476 19476 0.21390489652844735 HLVKKALRVLP 11 Unmodified _HLVKKALRVLP_ 0 0 0 nc|ENSG00000115607|O95256-2|IL18RAP;IL18RAP|p.M555Cfs*7|1|0.07|ENSG00000115607|chr2:102452041-102452041|A/-|frameshift_variant;ENSG00000115607|ENST00000687160|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2507019042969 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 53.114 1 50.23 49.73 50.73 -2.8837 0 0 0 0.22632 1 10116 10116 0 0 1 19560 2872 12764 12768 19477 19477 0.21390489652844735 HLVKKALRVLP 11 Unmodified _HLVKKALRVLP_ 0 0 0 nc|ENSG00000115607|O95256-2|IL18RAP;IL18RAP|p.M555Cfs*7|1|0.07|ENSG00000115607|chr2:102452041-102452041|A/-|frameshift_variant;ENSG00000115607|ENST00000687160|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.244140625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 115.28 1 110.81 110.31 111.31 -4.4726 0 0 0 0.22632 1 22722 22722 0.094841 0 1 19561 2872 12764 12768 19478 19478 0.21390489652844735 HLVKKALRVLP 11 Unmodified _HLVKKALRVLP_ 0 0 0 nc|ENSG00000115607|O95256-2|IL18RAP;IL18RAP|p.M555Cfs*7|1|0.07|ENSG00000115607|chr2:102452041-102452041|A/-|frameshift_variant;ENSG00000115607|ENST00000687160|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2513122558594 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 66.077 1 62.794 62.294 63.294 -3.2832 0 0 0 0.23698 1 12432 12432 0.50596 0 1 19562 2872 12764 12768 19479 19479 0.21390489652844735 HLVPRMGP 8 Unmodified _HLVPRMGP_ 0 0 0 ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENST00000465230.5_1_2:220470314-220471132:+|nuORF;STK11IP|p.L552Cfs*50|1|0.22|ENSG00000144589|chr2:219608596-219608596|C/-|frameshift_variant;STK11IP|p.E522Rfs*80|1|0.11|ENSG00000144589|chr2:219608354-219608354|G/-|frameshift_variant ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75433349609375 2 453.752547 905.490542 0.27955 0.00012685 1.4237 0.000646 1.7032 0.00077285 453.75328950455247 29.276 0.49458 27.383 27.123 27.617 -1.8928 18 13 2 0 0 0 8448 1 4939 4939 0.063987 0 1 557410 19563 4562 12765 12769 19480 19480 0.03401585810695451 HLVQKLQAE 9 Unmodified _HLVQKLQAE_ 0 0 0 ENSG00000090615|ENST00000450791|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3 ENSG00000090615|ENST00000450791|GOLGA3 ENSG00000090615|ENST00000450791|GOLGA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2859497070312 2 533.306198 1064.59784 0.59342 0.00031647 0.033824 1.8039E-05 0.62724 0.00033451 533.3061377799593 93.547 0.74242 89.403 89.147 89.89 -4.1435 41 21 3 0 0 0 0.36931 1 17904 17904 27.629 2.2295 1 3061800 19564 1790 12766 12770 19481 19481 0.06812834225888764 HLVRGRHGF 9 Unmodified _HLVRGRHGF_ 0 0 0 REV__nc|ENSG00000164287|Q86Y33-3|CDC20B REV__nc|ENSG00000164287|Q86Y33-3|CDC20B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2052001953125 3 360.20542 1077.59443 NaN NaN NaN NaN NaN NaN NaN 36.845 1 34.376 33.876 34.876 -2.4688 0 0 0 0.23508 1 6805 6805 5.2969 0 1 + 19565 17667 12767 12771 19482 19482 0.058736289625585414 HLVSEFEE 8 Unmodified _HLVSEFEE_ 0 0 0 REV__ENSG00000204442|ENST00000375915|NALF1 REV__ENSG00000204442|ENST00000375915|NALF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 495.2343444824219 2 495.232364 988.450176 NaN NaN NaN NaN NaN NaN NaN 164.1 1 159.04 158.54 159.54 -5.0648 0 0 0 0.21486 1 31979 31979 6.3541 0.59368 1 + 19566 19536 12768 12772 19483 19483 -0.04451102098744286 HLYDYTVKL 9 Unmodified _HLYDYTVKL_ 0 0 0 nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1 nc|ENSG00000127946|O00291-3|HIP1 nc|ENSG00000127946|O00291-3|HIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.33544921875 2 576.308406 1150.60226 0.36307 0.00020924 -0.088693 -5.1115E-05 0.27438 0.00015813 576.3082632172107 109.97 0.68487 109.97 109.65 110.33 0 43 19 3 0 0 0 0.10383 1 21593 21593 74.2 18.023 1 4695300 19567 3495 12769 12773 19484 19484 0.032982986488150345 HLYDYTVKL 9 Unmodified _HLYDYTVKL_ 0 0 0 nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1 nc|ENSG00000127946|O00291-3|HIP1 nc|ENSG00000127946|O00291-3|HIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3321533203125 2 576.308406 1150.60226 0.24435 0.00014082 0.1469 8.4657E-05 0.39125 0.00022548 576.3084369889352 114.3 0.62737 109.75 109.42 110.04 -4.555 41 17 3 0 0 0 0.012196 3 21943 21880;21940;21943 100.09 51.943 1 4516400 19568 3495 12769 12773 19485;19486;19487 19487 0.032982986488150345 HLYDYTVKL 9 Unmodified _HLYDYTVKL_ 0 0 0 nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1 nc|ENSG00000127946|O00291-3|HIP1 nc|ENSG00000127946|O00291-3|HIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.328125 2 576.308406 1150.60226 0.55671 0.00032084 -0.21285 -0.00012267 0.34386 0.00019817 576.3080678288435 114.06 0.72806 109.75 109.37 110.1 -4.3136 45 20 3 0 0 0 0.053942 3 21920 21920;22012;22033 69.105 40.023 1 4565900 19569 3495 12769 12773 19488;19489;19490 19488 0.032982986488150345 HLYDYTVKL 9 Unmodified _HLYDYTVKL_ 0 0 0 nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1 nc|ENSG00000127946|O00291-3|HIP1 nc|ENSG00000127946|O00291-3|HIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 576.308406 1150.60226 -0.061904 -3.5676E-05 0.056164 3.2368E-05 -0.00574 -3.308E-06 576.3084862970544 114.25 0.63335 109.78 109.44 110.07 -4.4726 -0.030666 8.3794E-05 NaN 100.09 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4173100 19570 3495 12769 12773 0.032982986488150345 HLYHCSRLL 9 Unmodified _HLYHCSRLL_ 0 0 0 ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1 ENST00000569733.6_1_16:67575293-67580037:+|nuORF ENST00000569733.6_1_16:67575293-67580037:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21051025390625 3 381.202687 1140.58623 NaN NaN NaN NaN NaN NaN NaN 60.413 1 57.48 56.98 57.98 -2.9333 0 0 0 0.23508 1 11624 11624 4.897 1.0207 1 19571 1189 12770 12774 19491 19491 0.021563139309137114 HLYNYQNEV 9 Unmodified _HLYNYQNEV_ 0 0 0 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant;ENSG00000139517|ENST00000316334|LNX2 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.27587890625 2 590.275095 1178.53564 NaN NaN NaN NaN NaN NaN NaN 62.796 1 62.796 62.296 63.296 0 0 0 0 0.04992 1 12064 12064 52.268 31.854 1 19572 4251 12771 12775 19492 19492 -0.04648936913099533 HLYNYQNEV 9 Unmodified _HLYNYQNEV_ 0 0 0 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant;ENSG00000139517|ENST00000316334|LNX2 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2757568359375 2 590.275095 1178.53564 0.45361 0.00026775 0.42329 0.00024986 0.87689 0.00051761 590.2751122489512 66.035 0.31439 62.988 62.876 63.191 -3.047 10 8 2 0 0 0 0.09143 3 12810 12779;12783;12810 58.679 39.317 1 1089800 19573 4251 12771 12775 19493;19494;19495 19495 -0.04648936913099533 HLYNYQNEV 9 Unmodified _HLYNYQNEV_ 0 0 0 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant;ENSG00000139517|ENST00000316334|LNX2 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2769775390625 2 590.275095 1178.53564 NaN NaN NaN NaN NaN NaN NaN 65.893 1 62.846 62.346 63.346 -3.047 0 0 0 0.18705 1 12761 12761 25.399 16.654 1 19574 4251 12771 12775 19496 19496 -0.04648936913099533 HLYNYQNEV 9 Unmodified _HLYNYQNEV_ 0 0 0 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant;ENSG00000139517|ENST00000316334|LNX2 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2749633789062 2 590.275095 1178.53564 NaN NaN NaN NaN NaN NaN NaN 66.511 1 63.014 62.514 63.514 -3.4965 0 0 0 0.091359 1 12466 12466 39.957 24.11 1 19575 4251 12771 12775 19497 19497 -0.04648936913099533 HLYNYQNEV 9 Unmodified _HLYNYQNEV_ 0 0 0 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant;ENSG00000139517|ENST00000316334|LNX2 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2756958007812 2 590.275095 1178.53564 NaN NaN NaN NaN NaN NaN NaN 66.32 1 63.01 62.51 63.51 -3.3105 0 0 0 0.018745 1 12482 12482 68.081 41.813 1 19576 4251 12771 12775 19498 19498 -0.04648936913099533 HLYSSDPLY 9 Unmodified _HLYSSDPLY_ 0 0 0 ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5;TUBGCP5|p.D713Ifs*5|1|0.18|ENSG00000275835|chr15:23009953-23009953|T/-|frameshift_variant ENSG00000275835|ENST00000615383|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.79150390625 2 547.761289 1093.50803 NaN NaN NaN NaN NaN NaN NaN 162.51 1 157.32 156.82 157.82 -5.1878 0 0 0 0.23508 1 31557 31557 9.3474 0.75416 1 19577 8026 12772 12776 19499 19499 -0.034988401733244245 HLYVSYVY 8 Unmodified _HLYVSYVY_ 0 0 0 REV__ENST00000321250.12_1_8:29964894-29965068:+|nuORF REV__ENST00000321250.12_1_8:29964894-29965068:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.281005859375 2 522.263468 1042.51238 NaN NaN NaN NaN NaN NaN NaN 56.018 1 56.018 55.518 56.518 0 0 0 0 0.17294 1 10697 10697 34.187 2.0704 1 + 19578 20551 12773 12777 19500 19500 -0.0071733095976469485 HMAPIGFT 8 Unmodified _HMAPIGFT_ 0 0 0 REV__ACTL7B|p.T179M|1|0.47|ENSG00000148156|chr9:108855395-108855395|G/A|missense_variant REV__ACTL7B|p.T179M|1|0.47|ENSG00000148156|chr9:108855395-108855395|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2169189453125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 90.188 1 86.329 85.829 86.829 -3.8595 0 0 0 0.21486 1 17645 17645 8.5933 2.2392 1 + 19579 12927 12774 12778 19501 19501 -0.019854982088986617 HMIKLHGA 8 Unmodified _HMIKLHGA_ 0 0 0 ENST00000498342.5_1_1:6647219-6648294:+|nuORF;ENSG00000204859|ENST00000377674|ZBTB48 ENST00000498342.5_1_1:6647219-6648294:+|nuORF ENST00000498342.5_1_1:6647219-6648294:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7536315917969 2 453.752547 905.490542 NaN NaN NaN NaN NaN NaN NaN 162.77 1 157.59 157.09 158.09 -5.1878 0 0 0 0.23664 1 31625 31625 3.2813 3.1584 1 19580 7617 12775 12779 19502 19502 0.034015858106840824 HMKLITILIY 10 Unmodified _HMKLITILIY_ 0 0 0 REV__ENSG00000182334|ENST00000641167|OR5P3 REV__ENSG00000182334|ENST00000641167|OR5P3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7679443359375 2 622.875402 1243.73625 0.22448 0.00013983 2.7778 0.0017302 3.0023 0.0018701 622.8774679604285 56.374 0.84031 56.374 55.938 56.778 0 44 23 3 0 0 0 0.75565 1 10691 10691 3.9444 0.66309 1 2426000 + 19581 18777 12776 12780 19503 19503 0.12413241150034082 HMQAAQKWQNI 11 Unmodified _HMQAAQKWQNI_ 0 0 0 REV__FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant REV__FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 452.2280578613281 3 452.227673 1353.66119 NaN NaN NaN NaN NaN NaN NaN 95.696 1 91.815 91.315 92.315 -3.881 0 0 0 0.22632 1 18364 18364 0.58532 0 1 + 19582 14332 12777 12781 19504 19504 -0.0014954832852254185 HMREEIKENQK 11 Unmodified _HMREEIKENQK_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENST00000465196.5_1_13:96635825-96665653:-|nuORF ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2451477050781 3 481.245392 1440.71435 NaN NaN NaN NaN NaN NaN NaN 126.93 1 122.13 121.63 122.63 -4.7958 0 0 0 0.22632 1 24360 24360 0.58532 0 1 19583 2139 12778 12782 19505 19505 0.011617846634862872 HMTKLDPG 8 Unmodified _HMTKLDPG_ 0 0 0 ENST00000479587.1_1_2:207025456-207025543:+|nuORF ENST00000479587.1_1_2:207025456-207025543:+|nuORF ENST00000479587.1_1_2:207025456-207025543:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 300.15283203125 3 300.153222 897.437837 NaN NaN NaN NaN NaN NaN NaN 108.81 1 108.81 108.31 109.31 0 0 0 0 0.21486 1 21399 21399 0.45834 0 1 19584 10343 12779 12783 19506 19506 -0.014984170427965182 HMVKCQGL 8 Unmodified _HMVKCQGL_ 0 0 0 ENSG00000137218|ENST00000373018|FRS3 ENSG00000137218|ENST00000373018|FRS3 ENSG00000137218|ENST00000373018|FRS3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2320251464844 2 458.23059 914.446628 NaN NaN NaN NaN NaN NaN NaN 179.08 1 174.22 173.72 174.72 -4.868 0 0 0 0.21486 1 35660 35660 2.8892 0 1 19585 4073 12780 12784 19507 19507 -0.014017666779523097 HMWHFKRQHHW 11 Unmodified _HMWHFKRQHHW_ 0 0 0 ENST00000367495.3_1_6:146875744-146875882:+|nuORF ENST00000367495.3_1_6:146875744-146875882:+|nuORF ENST00000367495.3_1_6:146875744-146875882:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7913208007812 3 543.930073 1628.76839 NaN NaN NaN NaN NaN NaN NaN 172.19 1 167.4 166.9 167.9 -4.7898 0 0 0 0.23698 1 35061 35061 0.094841 0.011491 1 19586 9069 12781 12785 19508 19508 -0.0208453360362455 HNCRNRNS 8 Unmodified _HNCRNRNS_ 0 0 0 NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant;ENST00000489895.5_1_3:52514938-52524786:+|nuORF;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENSG00000010322|ENST00000345716|NISCH NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.0438537597656 3 334.154508 999.441694 -0.83658 -0.00027955 0.6366 0.00021272 -0.19998 -6.6825E-05 334.489072519418 15.503 0.17178 14.287 14.17 14.342 -1.2159 6 4 2 0 0 0 0.82378 1 2393 2393 3.2813 0.78282 1 588810 19587 12689 12782 12786 19509 19509 -0.05804934496370606 HNDAGIYTLH 10 Unmodified _HNDAGIYTLH_ 0 0 0 nc|ENSG00000007306|Q14002-2|CEACAM7;ENSG00000007306|ENST00000401731|CEACAM7 nc|ENSG00000007306|Q14002-2|CEACAM7 nc|ENSG00000007306|Q14002-2|CEACAM7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2187194824219 3 380.8526 1139.53597 0.0051145 1.9479E-06 0.093329 3.5545E-05 0.098444 3.7492E-05 380.8526917639096 47.695 0.38852 44.753 44.511 44.899 -2.9421 14 10 2 0 0 0 0.91149 1 8689 8689 3.3196 1.0369 1 461660 19588 1020 12783 12787 19510 19510 -0.028215171932288285 HNEIPQYKL 9 Unmodified _HNEIPQYKL_ 0 0 0 REV__nc|ENSG00000160746|Q9NW15-2|ANO10 REV__nc|ENSG00000160746|Q9NW15-2|ANO10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2053527832031 3 381.204862 1140.59276 NaN NaN NaN NaN NaN NaN NaN 176.48 1 176.48 175.98 176.98 0 0 0 0 0.23508 1 36560 36560 0.96228 0 1 + 19589 24119 12784 12788 19511 19511 0.028085303632678915 HNEKEEEN 8 Unmodified _HNEKEEEN_ 0 0 0 REV__ENST00000427140.5_1_20:57090603-57090762:+|nuORF REV__ENST00000427140.5_1_20:57090603-57090762:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.4617614746094 3 343.480832 1027.42067 -0.57004 -0.0001958 -1.1349 -0.00038981 -1.7049 -0.0005856 343.4803982539422 39.16 0.63942 36.611 36.431 37.071 -2.5491 56 17 4 0 0 0 8448 1 7298 7298 0.62683 0 1 14814000 + 19590 21577 12785 12789 19512 19512 -0.09194666114899519 HNEKNQDEL 9 Unmodified _HNEKNQDEL_ 0 0 0 REV__ENSG00000128833|ENST00000261839|MYO5C REV__ENSG00000128833|ENST00000261839|MYO5C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.1182556152344 3 376.175632 1125.50507 NaN NaN NaN NaN NaN NaN NaN 72.381 1 69.071 68.571 69.571 -3.3107 0 0 0 0.23508 1 14106 14106 4.5289 1.4566 1 + 19591 15936 12786 12790 19513 19513 -0.05266715298148483 HNFRFKYVYPL 11 Unmodified _HNFRFKYVYPL_ 0 0 0 CON__Q1A7A4 CON__Q1A7A4 CON__Q1A7A4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3988037109375 2 742.395879 1482.7772 NaN NaN NaN NaN NaN NaN NaN 179.37 1 174.5 174 175 -4.868 0 0 0 0.23698 1 35724 35724 1.3295 0.92882 1 + 19592 683 12787 12791 19514 19514 0.05512718513864456 HNHSLKSP 8 Unmodified _HNHSLKSP_ 0 0 0 REV__ENST00000255882.10_2_22:21062058-21062313:-|nuORF REV__ENST00000255882.10_2_22:21062058-21062313:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2395324707031 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 64.241 1 64.241 63.741 64.741 0 0 0 0 0.21171 1 12366 12366 15.847 1.0089 1 + 19593 20130 12788 12792 19515 19515 0.0046686329772001045 HNKEVEPLL 9 Unmodified _HNKEVEPLL_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A;POLR3A|p.K348Nfs*33|1|0.16|ENSG00000148606|chr10:78021864-78021864|T/-|frameshift_variant ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2022705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 64.598 1 61.6 61.1 62.1 -2.9975 0 0 0 0.22823 1 12496 12496 15.248 0 1 19594 4752 12789 12793 19516 19516 0.0461712798901317 HNLSSEINE 9 Unmodified _HNLSSEINE_ 0 0 0 nc|ENSG00000116774|Q9NRN5-3|OLFML3 nc|ENSG00000116774|Q9NRN5-3|OLFML3 nc|ENSG00000116774|Q9NRN5-3|OLFML3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2791137695312 2 521.743628 1041.4727 -0.09211 -4.8058E-05 -1.1565 -0.00060341 -1.2486 -0.00065147 521.7431051411394 82.137 0.7597 78.449 78.118 78.878 -3.6879 31 21 2 0 0 0 0.68435 1 15688 15688 7.2892 0 1 2707400 19595 12295 12790 12794 19517 19517 -0.04637502701143603 HNRQRTKG 8 Unmodified _HNRQRTKG_ 0 0 0 REV__ENSG00000150051|ENST00000419761|MKX REV__ENSG00000150051|ENST00000419761|MKX MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.8452453613281 3 332.853046 995.537309 NaN NaN NaN NaN NaN NaN NaN 37.014 1 34.666 34.166 35.166 -2.3479 0 0 0 0.21486 1 6554 6554 1.4819 0 1 + 19596 17024 12791 12795 19518 19518 0.039361616861810944 HNWSCTVHC 9 Unmodified _HNWSCTVHC_ 0 0 0 ENST00000500626.2_1_1:155586047-155588709:-|nuORF ENST00000500626.2_1_1:155586047-155588709:-|nuORF ENST00000500626.2_1_1:155586047-155588709:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7767944335938 2 543.715836 1085.41712 NaN NaN NaN NaN NaN NaN NaN 164.32 1 159.53 159.03 160.03 -4.7898 0 0 0 0.19649 1 32830 32830 0.029283 0 1 19597 10617 12792 12796 19519 19519 -0.12217330694102202 HPAAHSLG 8 Unmodified _HPAAHSLG_ 0 0 0 REV__ENST00000440326.1_1_2:208104861-208110222:+|nuORF REV__ENST00000440326.1_1_2:208104861-208110222:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 395.20538330078125 2 395.203744 788.392936 NaN NaN NaN NaN NaN NaN NaN 102.79 1 98.772 98.272 99.272 -4.0212 0 0 0 0.23366 1 19760 19760 0.12286 0 1 + 19598 21705 12793 12797 19520 19520 -0.009724797938019947 HPAPWLCVR 9 Unmodified _HPAPWLCVR_ 0 0 0 REV__ENST00000444502.5_1_22:22313806-22324763:-|nuORF REV__ENST00000444502.5_1_22:22313806-22324763:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2143249511719 3 360.192011 1077.5542 NaN NaN NaN NaN NaN NaN NaN 25.379 1 23.845 23.345 24.345 -1.5342 0 0 0 0.23508 1 4170 4170 8.7454 3.0136 1 + 19599 21736 12794 12798 19521 19521 0.018529462477545167 HPAYFAPA 8 Unmodified _HPAYFAPA_ 0 0 0 REV__ENSG00000235608|ENST00000422806|NKX1-1 REV__ENSG00000235608|ENST00000422806|NKX1-1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2159729003906 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 95.226 1 91.035 90.535 91.535 -4.1911 0 0 0 0.21486 1 18170 18170 6.3541 0 1 + 19600 19764 12795 12799 19522 19522 -0.023224249912459527 HPAYFAPA 8 Unmodified _HPAYFAPA_ 0 0 0 REV__ENSG00000235608|ENST00000422806|NKX1-1 REV__ENSG00000235608|ENST00000422806|NKX1-1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.216552734375 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 95.248 1 91.367 90.867 91.867 -3.881 0 0 0 0.21486 1 18276 18276 6.3541 0 1 + 19601 19764 12795 12799 19523 19523 -0.023224249912459527 HPAYFAPA 8 Unmodified _HPAYFAPA_ 0 0 0 REV__ENSG00000235608|ENST00000422806|NKX1-1 REV__ENSG00000235608|ENST00000422806|NKX1-1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22802734375 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 95.276 1 91.395 90.895 91.895 -3.881 0 0 0 0.23711 1 18282 18282 0.063987 0 1 + 19602 19764 12795 12799 19524 19524 -0.023224249912459527 HPCPVQHPK 9 Unmodified _HPCPVQHPK_ 0 0 0 ENST00000463846.5_1_1:44461379-44461848:+|nuORF ENST00000463846.5_1_1:44461379-44461848:+|nuORF ENST00000463846.5_1_1:44461379-44461848:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2678833007812 2 521.766186 1041.51782 -0.85615 -0.00044671 0.32449 0.00016931 -0.53166 -0.0002774 521.7659240899983 22.155 0.83943 20.701 20.386 21.226 -1.4535 34 23 2 0 0 0 0.64764 1 3454 3454 0.96228 0 1 393380 19603 10105 12796 12800 19525 19525 -0.0012793064895504358 HPETVFHFWIR 11 Unmodified _HPETVFHFWIR_ 0 0 0 ENST00000493738.5_1_7:128354060-128363382:+|nuORF;nc|ENSG00000135248|Q96KD3-3|GARIN1B;ENSG00000135248|ENST00000621392|GARIN1B;nc|ENSG00000135248|Q96KD3|GARIN1B ENST00000493738.5_1_7:128354060-128363382:+|nuORF ENST00000493738.5_1_7:128354060-128363382:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2687683105469 3 490.254328 1467.74115 NaN NaN NaN NaN NaN NaN NaN 105.75 1 101.49 100.99 101.99 -4.2638 0 0 0 0.22632 1 20815 20815 1.4551 0 1 19604 3908 12797 12801 19526 19526 0.02599261336968084 HPEVLVSWPS 10 Unmodified _HPEVLVSWPS_ 0 0 0 ENST00000547657.1_1_21:37741970-37758388:+|nuORF ENST00000547657.1_1_21:37741970-37758388:+|nuORF ENST00000547657.1_1_21:37741970-37758388:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3238525390625 2 575.798206 1149.58186 0.46447 0.00026744 -0.030363 -1.7483E-05 0.43411 0.00024996 575.7980366365607 117.26 0.72692 112.68 112.22 112.95 -4.5815 27 20 2 0 0 0 0.871 1 22426 22426 10.074 0 1 2559600 19605 11143 12798 12802 19527 19527 0.013051279889850775 HPFIFLVRDT 10 Unmodified _HPFIFLVRDT_ 0 0 0 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.765869140625 2 622.842948 1243.67134 NaN NaN NaN NaN NaN NaN NaN 146.15 1 146.15 145.65 146.65 0 0 0 0 0.22588 1 29219 29219 8.1555 0.21013 1 19606 4778 12799 12803 19528 19528 0.05925382668374368 HPGPAGLRL 9 Unmodified _HPGPAGLRL_ 0 0 0 REV__nc|ENSG00000141556|Q9BTW9-4|TBCD REV__nc|ENSG00000141556|Q9BTW9-4|TBCD MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24365234375 2 459.269419 916.524284 0.66743 0.00030653 -1.0623 -0.0004879 -0.39491 -0.00018137 459.2686190367868 79.082 1.5663 79.082 78.191 79.758 0 74 44 3 0 0 0 0.30516 1 15304 15304 0.37959 0 1 4193700 + 19607 24073 12800 12804 19529 19529 0.06268330574084757 HPGPGPTG 8 Unmodified _HPGPGPTG_ 0 0 0 ENST00000512731.5_1_1:1567737-1568735:+|nuORF ENST00000512731.5_1_1:1567737-1568735:+|nuORF ENST00000512731.5_1_1:1567737-1568735:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2115478515625 2 360.177195 718.339838 NaN NaN NaN NaN NaN NaN NaN 25.002 1 23.468 22.968 23.968 -1.5342 0 0 0 0.23294 1 4092 4092 0.68139 0.55853 1 19608 10758 12801 12805 19530 19530 -0.030598575764884117 HPGQVEKHY 9 Unmodified _HPGQVEKHY_ 0 0 0 ENSG00000173226|ENST00000310864|IQCB1;nc|ENSG00000173226|Q15051-2|IQCB1 ENSG00000173226|ENST00000310864|IQCB1 ENSG00000173226|ENST00000310864|IQCB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7724609375 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 124.03 1 119.45 118.95 119.95 -4.5757 0 0 0 0.13613 1 24454 24454 32.305 10.559 1 19609 6279 12802 12806 19531 19531 -0.012531959850548446 HPGWKLLEV 9 Unmodified _HPGWKLLEV_ 0 0 0 C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant;ENSG00000182326|ENST00000360817|C1S;ENST00000443875.5_1_12:7174318-7177952:+|nuORF C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20684814453125 3 360.206315 1077.59712 NaN NaN NaN NaN NaN NaN NaN 111.25 1 106.76 106.26 107.26 -4.4915 0 0 0 0.23508 1 21354 21354 4.897 2.1618 1 19610 351 12803 12807 19532 19532 0.06142039576843672 HPHPPSPVDP 10 Unmodified _HPHPPSPVDP_ 0 0 0 ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant;ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N708Tfs*6|1|0.34|ENSG00000171467|chr6:43355211-43355211|T/-|frameshift_variant;ZNF318|p.P785Lfs*37|1|0.23|ENSG00000171467|chr6:43354980-43354980|G/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318;ZNF318|p.A1247Lfs*13|1|0.36|ENSG00000171467|chr6:43340260-43340260|T/-|frameshift_variant ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2069396972656 3 360.513807 1078.51959 -0.82513 -0.00029747 0.67242 0.00024242 -0.1527 -5.5052E-05 360.51400265559766 25.334 0.76722 23.481 23.116 23.883 -1.8534 65 21 5 0 0 0 0.91149 1 4107 4107 1.7423 0 1 22769000 19611 6145 12804 12808 19533 19533 -0.01652598359351032 HPHQAWPA 8 Unmodified _HPHQAWPA_ 0 0 0 nc|ENSG00000110536|Q8WUK0-3|PTPMT1 nc|ENSG00000110536|Q8WUK0-3|PTPMT1 nc|ENSG00000110536|Q8WUK0-3|PTPMT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1471862792969 3 315.155955 942.446034 NaN NaN NaN NaN NaN NaN NaN 56.684 1 53.508 53.008 54.008 -3.1761 0 0 0 0.21486 1 10552 10552 4.3292 2.2432 1 19612 12281 12805 12809 19534 19534 -0.02749102011159721 HPHQPKPD 8 Unmodified _HPHQPKPD_ 0 0 0 ENST00000216160.10_1_22:39822838-39826082:+|nuORF ENST00000216160.10_1_22:39822838-39826082:+|nuORF ENST00000216160.10_1_22:39822838-39826082:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7211608886719 2 478.240858 954.467164 0.20828 9.961E-05 -1.9148 -0.00091572 -1.7065 -0.00081611 478.2399028771986 33.59 0.52002 31.443 31.187 31.707 -2.1468 23 14 2 0 0 0 0.71876 1 5900 5900 11.64 0 1 856300 19613 8109 12806 12810 19535 19535 -0.011891367022940358 HPHVRHPW 8 Unmodified _HPHVRHPW_ 0 0 0 REV__ENSG00000104856|ENST00000221452|RELB REV__ENSG00000104856|ENST00000221452|RELB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.277587890625 2 533.278109 1064.54167 NaN NaN NaN NaN NaN NaN NaN 12.105 1 10.985 10.485 11.485 -1.1206 0 0 0 0.2396 1 1423 1423 0.0082765 0 1 + 19614 14947 12807 12811 19536 19536 0.011976708997508467 HPIDLYAK 8 Unmodified _HPIDLYAK_ 0 0 0 REV__ENSG00000133101|ENST00000255465|CCNA1 REV__ENSG00000133101|ENST00000255465|CCNA1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7219543457031 2 478.763635 955.512717 NaN NaN NaN NaN NaN NaN NaN 15.562 1 14.347 13.847 14.847 -1.2159 0 0 0 0.21486 1 2404 2404 2.5775 0 1 + 19615 16154 12808 12812 19537 19537 0.03318088760079263 HPILSEFCM 9 Unmodified _HPILSEFCM_ 0 0 0 ENST00000567859.5_1_16:20812516-20814833:-|nuORF;ERI2|p.V159Gfs*6|1|0.29|ENSG00000196678|chr16:20800387-20800388|-/C|frameshift_variant;nc|ENSG00000196678|A8K979-3|ERI2;nc|ENSG00000196678|A8K979-4|ERI2;ERI2|p.K547Nfs*19|2|0.18|ENSG00000196678|chr16:20798159-20798159|T/-|frameshift_variant;ENSG00000196678|ENST00000357967|ERI2 ENST00000567859.5_1_16:20812516-20814833:-|nuORF ENST00000567859.5_1_16:20812516-20814833:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 538.6921997070312 2 538.748813 1075.48307 NaN NaN NaN NaN NaN NaN NaN 166.82 1 162.03 161.53 162.53 -4.7898 0 0 0 0.23508 1 33561 33561 8.5933 1.304 1 19616 7300 12809 12813 19538 19538 -0.051649345719170014 HPKIKVAKKPK 11 Unmodified _HPKIKVAKKPK_ 0 0 0 REV__ZFAND4|p.L299Wfs*73|1|0.08|ENSG00000172671|chr10:45626927-45626927|A/-|frameshift_variant REV__ZFAND4|p.L299Wfs*73|1|0.08|ENSG00000172671|chr10:45626927-45626927|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24993896484375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 120 1 115.36 114.86 115.86 -4.645 0 0 0 0.22632 1 23029 23029 0.50596 0 1 + 19617 18300 12810 12814 19539 19539 0.21390489652821998 HPKLKKKVL 9 Unmodified _HPKLKKKVL_ 0 0 0 ENST00000447107.1_1_14:64821486-64821564:-|nuORF ENST00000447107.1_1_14:64821486-64821564:-|nuORF ENST00000447107.1_1_14:64821486-64821564:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 545.5223999023438 2 545.876594 1089.73863 NaN NaN NaN NaN NaN NaN NaN 171.49 1 166.62 166.12 167.12 -4.873 0 0 0 0.23508 1 33990 33990 0.6015 0.076735 1 19618 9945 12811 12815 19540 19540 0.1973545766998086 HPKPDGTPA 9 Unmodified _HPKPDGTPA_ 0 0 0 ENST00000249071.10_2_22:37621919-37622054:-|nuORF ENST00000249071.10_2_22:37621919-37622054:-|nuORF ENST00000249071.10_2_22:37621919-37622054:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2355041503906 2 460.235242 918.45593 0.16126 7.4216E-05 0.75298 0.00034655 0.91424 0.00042076 460.2355601077665 76.665 0.80586 73.031 72.444 73.25 -3.6337 45 22 3 0 0 0 0.37087 1 14560 14560 0.12781 0 1 1895000 19619 8216 12812 12816 19541 19541 -0.006559587964261482 HPLAVTPFVT 10 Unmodified _HPLAVTPFVT_ 0 0 0 REV__PITPNM2|p.A933V|1|0.07|ENSG00000090975|chr12:122988806-122988806|G/A|missense_variant REV__PITPNM2|p.A933V|1|0.07|ENSG00000090975|chr12:122988806-122988806|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2837524414062 2 541.305667 1080.59678 NaN NaN NaN NaN NaN NaN NaN 142.6 1 137.7 137.2 138.2 -4.8982 0 0 0 0.22583 1 27512 27512 13.906 0.86358 1 + 19620 24474 12813 12817 19542 19542 0.059706198569983826 HPLGAGPL 8 Unmodified _HPLGAGPL_ 0 0 0 REV__ENST00000360737.4_1_22:46493806-46505887:+|nuORF REV__ENST00000360737.4_1_22:46493806-46505887:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2194519042969 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 29.123 1 29.123 28.623 29.623 0 0 0 0 0.23899 1 5193 5193 1.3295 0 1 + 19621 20869 12814 12818 19543 19543 0.03337878871388966 HPLGRWEVK 9 Unmodified _HPLGRWEVK_ 0 0 0 PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant;nc|ENSG00000153246|Q13018-2|PLA2R1;ENSG00000153246|ENST00000283243|PLA2R1 PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2144775390625 3 374.545331 1120.61416 -0.15338 -5.7449E-05 0.13001 4.8693E-05 -0.023378 -8.7562E-06 374.54534715175464 109.3 1.2811 104.84 103.91 105.2 -4.4518 46 36 2 0 0 0 0.61637 1 20972 20972 0.40827 0 1 706310 19622 4964 12815 12819 19544 19544 0.058679601826497674 HPLGRWEVK 9 Unmodified _HPLGRWEVK_ 0 0 0 PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant;nc|ENSG00000153246|Q13018-2|PLA2R1;ENSG00000153246|ENST00000283243|PLA2R1 PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.545331 1120.61416 -0.70908 -0.00026558 0.53834 0.00020163 -0.17074 -6.3949E-05 374.54545919685245 108.96 0.77318 104.58 104.19 104.96 -4.3776 -0.13062 0.00021671 NaN 0.40827 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 933720 19623 4964 12815 12819 0.058679601826497674 HPLLAMELGKA 11 Unmodified _HPLLAMELGKA_ 0 0 0 REV__ENSG00000168434|ENST00000307149|COG7 REV__ENSG00000168434|ENST00000307149|COG7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2670288085938 2 590.331359 1178.64816 NaN NaN NaN NaN NaN NaN NaN 174.65 1 169.86 169.36 170.36 -4.7898 0 0 0 0.23018 1 35686 35686 8.1555 0.54658 1 + 19624 18025 12816 12820 19545 19545 0.06598620559407209 HPLLSFIE 8 Unmodified _HPLLSFIE_ 0 0 0 REV__nc|ENSG00000144852|O75469-5|NR1I2 REV__nc|ENSG00000144852|O75469-5|NR1I2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7333984375 2 478.26601 954.517468 NaN NaN NaN NaN NaN NaN NaN 66.546 1 63.22 62.72 63.72 -3.3268 0 0 0 0.23312 1 12531 12531 6.2058 5.579 1 + 19625 16810 12817 12821 19546 19546 0.03838972902849491 HPLPEPVM 8 Unmodified _HPLPEPVM_ 0 0 0 REV__ENST00000455236.4_1_22:38121309-38121573:+|nuORF REV__ENST00000455236.4_1_22:38121309-38121573:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.230712890625 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 53.069 1 53.069 52.569 53.569 0 0 0 0 0.20378 1 10098 10098 22.453 0 1 + 19626 21844 12818 12822 19547 19547 0.000830574796395922 HPLPGDRGA 9 Unmodified _HPLPGDRGA_ 0 0 0 REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2400207519531 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 53.25 1 53.25 52.75 53.75 0 0 0 0 0.20924 1 10136 10136 20.871 2.7362 1 + 19627 21311 12819 12823 19548 19548 0.0046686329772001045 HPLPGDRGA 9 Unmodified _HPLPGDRGA_ 0 0 0 REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23931884765625 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 53.5 1 53.5 53 54 0 0 0 0 0.20924 1 10189 10189 20.871 2.7362 1 + 19628 21311 12819 12823 19549 19549 0.0046686329772001045 HPLPGDRGA 9 Unmodified _HPLPGDRGA_ 0 0 0 REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.239501953125 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 56.346 1 53.156 52.656 53.656 -3.1895 0 0 0 0.20924 1 10441 10441 20.871 2.7362 1 + 19629 21311 12819 12823 19550 19550 0.0046686329772001045 HPLPGDRGA 9 Unmodified _HPLPGDRGA_ 0 0 0 REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2395324707031 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 56.607 1 53.417 52.917 53.917 -3.1895 0 0 0 0.20924 1 10495 10495 20.871 2.7362 1 + 19630 21311 12819 12823 19551 19551 0.0046686329772001045 HPLPGDRGA 9 Unmodified _HPLPGDRGA_ 0 0 0 REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23974609375 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 56.62 1 53.444 52.944 53.944 -3.1761 0 0 0 0.20924 1 10539 10539 20.871 6.2895 1 + 19631 21311 12819 12823 19552 19552 0.0046686329772001045 HPLPGDRGA 9 Unmodified _HPLPGDRGA_ 0 0 0 REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2492980957031 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 56.769 1 53.593 53.093 54.093 -3.1761 0 0 0 0.20924 1 10570 10570 20.871 5.103 1 + 19632 21311 12819 12823 19553 19553 0.0046686329772001045 HPLPGDRGA 9 Unmodified _HPLPGDRGA_ 0 0 0 REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF REV__ENST00000397854.7_1_21:46308615-46308678:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23980712890625 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 56.863 1 53.687 53.187 54.187 -3.1761 0 0 0 0.20924 1 10590 10590 20.871 5.103 1 + 19633 21311 12819 12823 19554 19554 0.0046686329772001045 HPLPPDIM 8 Unmodified _HPLPPDIM_ 0 0 0 nc|ENSG00000204472|P55008-3|AIF1 nc|ENSG00000204472|P55008-3|AIF1 nc|ENSG00000204472|P55008-3|AIF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23919677734375 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 52.94 1 52.94 52.44 53.44 0 0 0 0 0.20378 1 10069 10069 22.453 1.5814 1 19634 12561 12820 12824 19555 19555 0.0008305747962822352 HPLPPDIM 8 Unmodified _HPLPPDIM_ 0 0 0 nc|ENSG00000204472|P55008-3|AIF1 nc|ENSG00000204472|P55008-3|AIF1 nc|ENSG00000204472|P55008-3|AIF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2401428222656 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 55.766 1 52.883 52.383 53.383 -2.8837 0 0 0 0.20378 1 10676 10676 22.453 1.5814 1 19635 12561 12820 12824 19556 19556 0.0008305747962822352 HPLPPDIM 8 Unmodified _HPLPPDIM_ 0 0 0 nc|ENSG00000204472|P55008-3|AIF1 nc|ENSG00000204472|P55008-3|AIF1 nc|ENSG00000204472|P55008-3|AIF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.239501953125 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 56.503 1 53.608 53.108 54.108 -2.8944 0 0 0 0.20378 1 10827 10827 22.453 1.5814 1 19636 12561 12820 12824 19557 19557 0.0008305747962822352 HPLQELVA 8 Unmodified _HPLQELVA_ 0 0 0 REV__ENST00000453179.1_1_6:24749364-24751927:+|nuORF REV__ENST00000453179.1_1_6:24749364-24751927:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7557067871094 2 453.75581 905.497067 0.20703 9.394E-05 0.19907 9.033E-05 0.4061 0.00018427 453.75588621040964 72.882 0.61575 69.254 68.873 69.489 -3.6275 34 16 3 0 0 0 0.71273 1 13715 13715 12.532 0.89125 1 5055200 + 19637 21825 12821 12825 19558 19558 0.04053802243049631 HPLSRQHRA 9 Unmodified _HPLSRQHRA_ 0 0 0 VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.1957092285156 3 367.872329 1100.59516 -0.19972 -7.3473E-05 -1.0212 -0.00037568 -1.2209 -0.00044915 367.871938067883 35.01 0.61643 35.01 34.587 35.203 0 58 17 5 0 0 0 0.5428 1 6401 6401 4.897 0 1 18653000 19638 26567 12822 12826 19559 19559 0.04888423611600956 HPLSRQHRA 9 Unmodified _HPLSRQHRA_ 0 0 0 VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 367.872329 1100.59516 -0.63545 -0.00023377 -0.51734 -0.00019031 -1.1528 -0.00042408 367.8721001809428 37.292 0.61944 34.823 34.431 35.05 -2.4688 -0.059712 0.00036177 NaN 4.897 59 17 5 NaN NaN NaN NaN 0 NaN NaN 0 10004000 19639 26567 12822 12826 0.04888423611600956 HPLSRQHRA 9 Unmodified _HPLSRQHRA_ 0 0 0 VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 367.872329 1100.59516 0.099848 3.6731E-05 -1.2525 -0.00046078 -1.1527 -0.00042405 367.8718317023433 37.231 0.58257 34.883 34.516 35.099 -2.3479 4.8416E-06 -0.00044962 NaN 4.897 54 16 4 NaN NaN NaN NaN 0 NaN NaN 0 9880600 19640 26567 12822 12826 0.04888423611600956 HPLSRQHRA 9 Unmodified _HPLSRQHRA_ 0 0 0 VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant VASP|p.A167Lfs*101|1|0.36|ENSG00000125753|chr19:45522354-45522354|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 367.872329 1100.59516 -0.4456 -0.00016392 -0.68098 -0.00025051 -1.1266 -0.00041444 367.8720489971966 37.153 0.52952 34.815 34.521 35.05 -2.3375 -0.067597 0.00018118 NaN 4.897 48 14 4 NaN NaN NaN NaN 0 NaN NaN 0 9138500 19641 26567 12822 12826 0.04888423611600956 HPLTAFAY 8 Unmodified _HPLTAFAY_ 0 0 0 SELP|p.G727Ifs*14|1|0.04|ENSG00000174175|chr1:169594799-169594800|CC/-|frameshift_variant;SELP|p.G727Ffs*17|1|0.04|ENSG00000174175|chr1:169594800-169594801|-/GTGGAAA|frameshift_variant;ENSG00000174175|ENST00000263686|SELP;SELP|p.V338I|1|0.3|ENSG00000174175|chr1:169611627-169611627|C/T|missense_variant SELP|p.G727Ifs*14|1|0.04|ENSG00000174175|chr1:169594799-169594800|CC/-|frameshift_variant SELP|p.G727Ifs*14|1|0.04|ENSG00000174175|chr1:169594799-169594800|CC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24017333984375 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 66.03 1 66.03 65.53 66.53 0 0 0 0 0.22666 1 12745 12745 1.4551 0 1 19642 6334 12823 12827 19560 19560 -0.002538693027190675 HPMDYYWWLRM 11 Unmodified _HPMDYYWWLRM_ 0 0 0 ENSG00000161267|ENST00000392379|BDH1 ENSG00000161267|ENST00000392379|BDH1 ENSG00000161267|ENST00000392379|BDH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.280029296875 3 533.240813 1596.70061 0.11599 6.1848E-05 -0.88382 -0.00047129 -0.76783 -0.00040944 533.574684360061 64.13 0.73734 61.133 60.733 61.471 -2.9975 47 20 3 0 0 0 0.96197 1 12368 12368 1.2148 0.80657 1 5386100 19643 5288 12824 12828 19561 19561 -0.07387164369333732 HPPCLRLSA 9 Unmodified _HPPCLRLSA_ 0 0 0 ENST00000557373.1_1_14:35344698-35344785:+|nuORF ENST00000557373.1_1_14:35344698-35344785:+|nuORF ENST00000557373.1_1_14:35344698-35344785:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.005615234375 3 331.848133 992.52257 -0.010954 -3.6349E-06 -0.096283 -3.1951E-05 -0.10724 -3.5586E-05 331.8480629904361 45.872 1.4177 43.007 42.449 43.867 -2.8653 105 40 3 0 0 0 0.8799 1 8276 8276 4.897 0.95262 1 7647200 19644 11253 12825 12829 19562 19562 0.026009534938111756 HPPCLRLSA 9 Unmodified _HPPCLRLSA_ 0 0 0 ENST00000557373.1_1_14:35344698-35344785:+|nuORF ENST00000557373.1_1_14:35344698-35344785:+|nuORF ENST00000557373.1_1_14:35344698-35344785:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 331.848133 992.52257 -0.19115 -6.3432E-05 0.08739 2.9E-05 -0.10376 -3.4432E-05 331.84813291756643 42.762 1.457 42.762 42.183 43.64 0 -0.14983 1.0712E-05 NaN 4.897 110 41 3 NaN NaN NaN NaN 0 NaN NaN 0 8510900 19645 11253 12825 12829 0.026009534938111756 HPPCLRLSA 9 Unmodified _HPPCLRLSA_ 0 0 0 ENST00000557373.1_1_14:35344698-35344785:+|nuORF ENST00000557373.1_1_14:35344698-35344785:+|nuORF ENST00000557373.1_1_14:35344698-35344785:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 331.848133 992.52257 -0.29446 -9.7717E-05 0.18719 6.2119E-05 -0.10727 -3.5598E-05 331.8481570293746 45.808 1.7091 42.967 42.297 44.006 -2.8409 0.054948 0.00011007 NaN 4.897 99 48 3 NaN NaN NaN NaN 0 NaN NaN 0 8145000 19646 11253 12825 12829 0.026009534938111756 HPPCRCPTPA 10 Unmodified _HPPCRCPTPA_ 0 0 0 REV__RXRA|p.M72Wfs*27|1|0.24|ENSG00000186350|chr9:134401812-134401812|C/-|frameshift_variant REV__RXRA|p.M72Wfs*27|1|0.24|ENSG00000186350|chr9:134401812-134401812|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2143249511719 3 360.168878 1077.4848 0.097068 3.4961E-05 0.45504 0.00016389 0.55211 0.00019885 360.1690209875715 25.577 0.89791 23.942 23.579 24.477 -1.6347 42 25 2 0 0 0 0.91149 1 4170 4170 3.8763 0.55669 1 1261000 + 19647 24588 12826 12830 19563 19563 -0.050838807632999305 HPPCRCPTPA 10 Unmodified _HPPCRCPTPA_ 0 0 0 REV__RXRA|p.M72Wfs*27|1|0.24|ENSG00000186350|chr9:134401812-134401812|C/-|frameshift_variant REV__RXRA|p.M72Wfs*27|1|0.24|ENSG00000186350|chr9:134401812-134401812|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 360.168878 1077.4848 -0.20977 -7.5551E-05 0.88197 0.00031766 0.6722 0.00024211 360.1692032388927 24.007 0.78566 24.007 23.552 24.337 0 0.064972 0.00023103 NaN 3.8763 37 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1398400 + 19648 24588 12826 12830 -0.050838807632999305 HPPCRCPTPA 10 Unmodified _HPPCRCPTPA_ 0 0 0 REV__RXRA|p.M72Wfs*27|1|0.24|ENSG00000186350|chr9:134401812-134401812|C/-|frameshift_variant REV__RXRA|p.M72Wfs*27|1|0.24|ENSG00000186350|chr9:134401812-134401812|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 360.168878 1077.4848 -0.77381 -0.0002787 0.65962 0.00023757 -0.11419 -4.1129E-05 360.50365516758876 25.73 0.34752 23.877 23.57 23.918 -1.8534 -0.065155 -9.2209E-06 NaN 3.8763 21 9 4 NaN NaN NaN NaN 0 NaN NaN 0 458270 + 19649 24588 12826 12830 -0.050838807632999305 HPPKLARIF 9 Unmodified _HPPKLARIF_ 0 0 0 REV__ENSG00000119203|ENST00000238112|CPSF3 REV__ENSG00000119203|ENST00000238112|CPSF3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2062683105469 3 360.222188 1077.64473 NaN NaN NaN NaN NaN NaN NaN 34.786 1 32.468 31.968 32.968 -2.3175 0 0 0 0.23508 1 6394 6394 1.1933 0 1 + 19650 15572 12827 12831 19564 19564 0.109017385676907 HPPKLARIF 9 Unmodified _HPPKLARIF_ 0 0 0 REV__ENSG00000119203|ENST00000238112|CPSF3 REV__ENSG00000119203|ENST00000238112|CPSF3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2110900878906 3 360.222188 1077.64473 NaN NaN NaN NaN NaN NaN NaN 34.842 1 32.565 32.065 33.065 -2.2766 0 0 0 0.23508 1 6115 6115 1.1933 0.49568 1 + 19651 15572 12827 12831 19565 19565 0.109017385676907 HPPLHPHPY 9 Unmodified _HPPLHPHPY_ 0 0 0 REV__ENST00000467160.1_1_19:19757877-19758222:-|nuORF REV__ENST00000467160.1_1_19:19757877-19758222:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7748413085938 2 547.780151 1093.54575 NaN NaN NaN NaN NaN NaN NaN 93.437 1 89.446 88.946 89.946 -3.9907 0 0 0 0.23048 1 18301 18301 14.582 2.341 1 + 19652 21977 12828 12832 19566 19566 0.002717156027983947 HPPLRFSPHW 10 Unmodified _HPPLRFSPHW_ 0 0 0 REV__ENST00000404054.3_1_4:1742398-1742845:+|nuORF REV__ENST00000404054.3_1_4:1742398-1742845:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23602294921875 3 425.22448 1272.65161 -0.27775 -0.00011811 -0.44832 -0.00019064 -0.72607 -0.00030874 425.22425520817535 95.325 0.69377 91.444 91.158 91.852 -3.881 30 19 2 0 0 0 0.91149 1 18244 18244 0.77653 0 1 1428300 + 19653 21374 12829 12833 19567 19567 0.026190514482550498 HPPPRMPP 8 Unmodified _HPPPRMPP_ 0 0 0 nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR nc|ENSG00000125944|O43390-4|HNRNPR nc|ENSG00000125944|O43390-4|HNRNPR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648864746094 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 66.552 1 66.552 66.052 67.052 0 0 0 0 0.23837 1 12856 12856 0.12286 0 1 19654 3405 12830 12834 19568 19568 0.008252992936263581 HPPPRMPP 8 Unmodified _HPPPRMPP_ 0 0 0 nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR nc|ENSG00000125944|O43390-4|HNRNPR nc|ENSG00000125944|O43390-4|HNRNPR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1645812988281 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 86.359 1 82.63 82.13 83.13 -3.7289 0 0 0 0.23837 1 16512 16512 0.12286 0 1 19655 3405 12830 12834 19569 19569 0.008252992936263581 HPPSDKVLS 9 Unmodified _HPPSDKVLS_ 0 0 0 REV__WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant REV__WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2647705078125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 73.08 1 73.08 72.58 73.58 0 0 0 0 0.18755 1 14184 14184 0.87518 0.19379 1 + 19656 17846 12831 12835 19570 19570 0.023328834091330464 HPPTGTGTVL 10 Unmodified _HPPTGTGTVL_ 0 0 0 ENST00000559541.1_1_15:52416976-52428016:-|nuORF ENST00000559541.1_1_15:52416976-52428016:-|nuORF ENST00000559541.1_1_15:52416976-52428016:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2634582519531 2 490.263999 978.513445 0.069424 3.4036E-05 -0.24418 -0.00011971 -0.17475 -8.5675E-05 490.2638454845085 85.278 0.56047 81.614 81.331 81.892 -3.6641 39 15 3 0 0 0 0.372 1 16724 16724 5.8681 3.2369 1 3571200 19657 11275 12832 12836 19571 19571 0.023328834091330464 HPPTGTGTVL 10 Unmodified _HPPTGTGTVL_ 0 0 0 ENST00000559541.1_1_15:52416976-52428016:-|nuORF ENST00000559541.1_1_15:52416976-52428016:-|nuORF ENST00000559541.1_1_15:52416976-52428016:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2641296386719 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 77.473 1 73.814 73.314 74.314 -3.6588 0 0 0 2.8426 1 14751 14751 0.51642 0 1 19658 11275 12832 12836 19572 19572 0.023328834091330464 HPPTLNQI 8 Unmodified _HPPTLNQI_ 0 0 0 ENST00000583108.5_1_17:65735015-65739972:+|nuORF;ENSG00000130935|ENST00000253247|NOL11 ENST00000583108.5_1_17:65735015-65739972:+|nuORF ENST00000583108.5_1_17:65735015-65739972:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.229736328125 2 460.253434 918.492316 NaN NaN NaN NaN NaN NaN NaN 56.757 1 53.567 53.067 54.067 -3.1895 0 0 0 0.18985 1 10527 10527 28.173 5.7206 1 19659 3649 12833 12837 19573 19573 0.029809181002860896 HPQPQIAE 8 Unmodified _HPQPQIAE_ 0 0 0 REV__ENST00000481742.1_1_19:36606416-36606569:+|nuORF REV__ENST00000481742.1_1_19:36606416-36606569:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2392578125 2 460.235242 918.45593 0.16126 7.4216E-05 0.75298 0.00034655 0.91424 0.00042076 460.2355601077665 76.665 0.80586 73.031 72.444 73.25 -3.6337 45 22 3 0 0 0 8448 1 14512 14512 0.12286 0 1 1895000 + 19660 22179 12834 12838 19574 19574 -0.006559587964375169 HPQPRPST 8 Unmodified _HPQPRPST_ 0 0 0 KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant;KIF26A|p.L1096Wfs*152|1|0.43|ENSG00000066735|chr14:104176064-104176064|G/-|frameshift_variant;KIF26A|p.G1145Afs*103|1|0.2|ENSG00000066735|chr14:104176218-104176218|G/-|frameshift_variant KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2391357421875 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 71.938 1 68.628 68.128 69.128 -3.3107 0 0 0 0.22665 1 14015 14015 1.4551 0 1 19661 12001 12835 12839 19575 19575 0.004668632977086418 HPRCSWRRF 9 Unmodified _HPRCSWRRF_ 0 0 0 REV__ENST00000424468.1_1_7:32932267-32932342:-|nuORF REV__ENST00000424468.1_1_7:32932267-32932342:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.764892578125 2 622.814533 1243.61451 NaN NaN NaN NaN NaN NaN NaN 9.5777 1 9.5777 9.0777 10.078 0 0 0 0 0.19631 1 1123 1123 0.20686 0.066965 1 + 19662 21547 12836 12840 19576 19576 0.0024505663084255502 HPRHVPAAA 9 Unmodified _HPRHVPAAA_ 0 0 0 ENST00000293780.4_1_17:4802527-4804189:-|nuORF ENST00000293780.4_1_17:4802527-4804189:-|nuORF ENST00000293780.4_1_17:4802527-4804189:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72247314453125 2 478.264668 954.514782 0.20881 9.9865E-05 -1.7425 -0.00083335 -1.5336 -0.00073349 478.26386668910607 64.957 0.31314 61.499 61.333 61.646 -3.4581 9 8 2 0 0 0 0.60805 1 12117 12117 12.532 0.89125 1 879640 19663 8485 12837 12841 19577 19577 0.03570562288552992 HPRPPWAH 8 Unmodified _HPRPPWAH_ 0 0 0 REV__ENST00000426981.5_2_2:128396458-128396839:-|nuORF REV__ENST00000426981.5_2_2:128396458-128396839:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.0340270996094 3 333.175349 996.504218 -0.20532 -6.8408E-05 -0.46786 -0.00015588 -0.67318 -0.00022429 333.17469008368766 21.052 0.24429 19.667 19.476 19.721 -1.3847 9 6 2 0 0 0 1.0276 1 3293 3293 0 0 1 232860 + 19664 21573 12838 12842 19578 19578 0.005825796341241585 HPRRMIGI 8 Unmodified _HPRRMIGI_ 0 0 0 MSH2|p.V102Ifs*75|1|0.05|ENSG00000095002|chr2:47408491-47408492|-/GATATTAC|frameshift_variant MSH2|p.V102Ifs*75|1|0.05|ENSG00000095002|chr2:47408491-47408492|-/GATATTAC|frameshift_variant MSH2|p.V102Ifs*75|1|0.05|ENSG00000095002|chr2:47408491-47408492|-/GATATTAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2657470703125 2 490.284546 978.554539 NaN NaN NaN NaN NaN NaN NaN 69.326 1 69.326 68.826 69.826 0 0 0 0 0.21486 1 13419 13419 11.114 0.93107 1 19665 12164 12839 12843 19579 19579 0.06440365967637263 HPRTSSPLRT 10 Unmodified _HPRTSSPLRT_ 0 0 0 REV__ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant REV__ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3204345703125 2 576.317628 1150.6207 NaN NaN NaN NaN NaN NaN NaN 79.306 1 75.502 75.002 76.002 -3.8048 0 0 0 2.8426 1 15045 15045 0.063865 0 1 + 19666 13145 12840 12844 19580 19580 0.05141853343366165 HPRVPSLTTVP 11 Unmodified _HPRVPSLTTVP_ 0 0 0 ENSG00000237649|ENST00000428849|KIFC1;KIFC1|p.Q234Tfs*52|1|0.38|ENSG00000237649|chr6:33404066-33404067|-/A|frameshift_variant ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2802734375 2 602.345855 1202.67716 NaN NaN NaN NaN NaN NaN NaN 172.63 1 172.63 172.13 173.13 0 0 0 0 0.22501 1 35645 35645 12.241 0.74595 1 19667 7831 12841 12845 19581 19581 0.08392481180021605 HPSCNKLKNY 10 Unmodified _HPSCNKLKNY_ 0 0 0 REV__ENSG00000001561|ENST00000321037|ENPP4 REV__ENSG00000001561|ENST00000321037|ENPP4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3012084960938 2 602.30059 1202.58663 NaN NaN NaN NaN NaN NaN NaN 130.55 1 125.78 125.28 126.28 -4.7725 0 0 0 0.22588 1 25126 25126 7.2892 0 1 + 19668 13820 12842 12846 19582 19582 -0.006563111398918409 HPSGFHLYY 9 Unmodified _HPSGFHLYY_ 0 0 0 REV__ENST00000562145.1_1_16:74748090-74750623:-|nuORF REV__ENST00000562145.1_1_16:74748090-74750623:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.5129699707031 3 374.178536 1119.51378 -0.028064 -1.0501E-05 0.81428 0.00030468 0.78621 0.00029418 374.17902779686773 20.076 0.93195 18.679 18.066 18.998 -1.3966 47 26 2 0 0 0 0.88211 1 3402 3402 1.1933 0 1 1232000 + 19669 14863 12843 12847 19583 19583 -0.04119696871021006 HPSLPLSHPP 10 Unmodified _HPSLPLSHPP_ 0 0 0 ENST00000558018.5_1_15:89442371-89442626:-|nuORF ENST00000558018.5_1_15:89442371-89442626:-|nuORF ENST00000558018.5_1_15:89442371-89442626:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2816162109375 2 541.293091 1080.57163 0.14516 7.8574E-05 0.20434 0.00011061 0.3495 0.00018918 541.2931157486837 59.842 1.714 56.528 55.854 57.568 -3.3139 95 48 3 0 0 0 0.70987 1 11120 11120 30.637 5.2372 1 1761600 19670 11262 12844 12848 19584 19584 0.03456565054420935 HPSPLAHD 8 Unmodified _HPSPLAHD_ 0 0 0 REV__ENST00000447501.5_1_7:56141874-56147121:+|nuORF REV__ENST00000447501.5_1_7:56141874-56147121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2154541015625 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 158.9 1 153.62 153.12 154.12 -5.2748 0 0 0 0.21486 1 30843 30843 5.2307 0.47466 1 + 19671 21771 12845 12849 19585 19585 -0.02724514484964402 HPSRPFLC 8 Unmodified _HPSRPFLC_ 0 0 0 ENST00000367311.4_1_1:201434710-201435094:-|nuORF ENST00000367311.4_1_1:201434710-201435094:-|nuORF ENST00000367311.4_1_1:201434710-201435094:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7431335449219 2 478.742179 955.469806 NaN NaN NaN NaN NaN NaN NaN 123.36 1 123.36 122.86 123.86 0 0 0 0 0.21486 1 24315 24315 9.3474 1.4373 1 19672 9065 12846 12850 19586 19586 -0.009710045689985236 HPSRPFLC 8 Unmodified _HPSRPFLC_ 0 0 0 ENST00000367311.4_1_1:201434710-201435094:-|nuORF ENST00000367311.4_1_1:201434710-201435094:-|nuORF ENST00000367311.4_1_1:201434710-201435094:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7431335449219 2 478.742179 955.469806 NaN NaN NaN NaN NaN NaN NaN 170.69 1 165.81 165.31 166.31 -4.873 0 0 0 0.21323 1 33792 33792 14.582 2.0501 1 19673 9065 12846 12850 19587 19587 -0.009710045689985236 HPSRQPQAP 9 Unmodified _HPSRQPQAP_ 0 0 0 LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.I3028Nfs*2|1|0.39|ENSG00000168702|chr2:140492645-140492646|-/T|frameshift_variant;LRP1B|p.N3100Kfs*6|1|0.21|ENSG00000168702|chr2:140485468-140485469|-/T|frameshift_variant;LRP1B|p.Y3120*|1|0.16|ENSG00000168702|chr2:140485402-140485408|AGTAGGG/-|frameshift_variant;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant;LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant;LRP1B|p.T2640Pfs*5|1|0.12|ENSG00000168702|chr2:140525952-140525952|T/-|frameshift_variant;LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 340.0191345214844 3 339.845669 1016.51518 -0.48458 -0.00016468 0.34555 0.00011743 -0.13903 -4.7248E-05 339.8457608576773 16.7 0.58595 15.443 15.195 15.781 -1.257 26 16 2 0 0 0 0.884 1 2465 2465 1.1933 0 1 602080 19674 5927 12847 12851 19588 19588 0.007579372177588084 HPSRQPQAP 9 Unmodified _HPSRQPQAP_ 0 0 0 LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.I3028Nfs*2|1|0.39|ENSG00000168702|chr2:140492645-140492646|-/T|frameshift_variant;LRP1B|p.N3100Kfs*6|1|0.21|ENSG00000168702|chr2:140485468-140485469|-/T|frameshift_variant;LRP1B|p.Y3120*|1|0.16|ENSG00000168702|chr2:140485402-140485408|AGTAGGG/-|frameshift_variant;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant;LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant;LRP1B|p.T2640Pfs*5|1|0.12|ENSG00000168702|chr2:140525952-140525952|T/-|frameshift_variant;LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 339.845669 1016.51518 -0.47383 -0.00016103 0.48754 0.00016569 0.013707 4.6582E-06 339.84574057308646 15.532 0.48293 15.532 15.261 15.744 0 0.025684 5.4179E-05 NaN 1.1933 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1303900 19675 5927 12847 12851 0.007579372177588084 HPSRQPQAP 9 Unmodified _HPSRQPQAP_ 0 0 0 LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.I3028Nfs*2|1|0.39|ENSG00000168702|chr2:140492645-140492646|-/T|frameshift_variant;LRP1B|p.N3100Kfs*6|1|0.21|ENSG00000168702|chr2:140485468-140485469|-/T|frameshift_variant;LRP1B|p.Y3120*|1|0.16|ENSG00000168702|chr2:140485402-140485408|AGTAGGG/-|frameshift_variant;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant;LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant;LRP1B|p.T2640Pfs*5|1|0.12|ENSG00000168702|chr2:140525952-140525952|T/-|frameshift_variant;LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 339.845669 1016.51518 -0.62283 -0.00021167 0.474 0.00016109 -0.14884 -5.0582E-05 339.845770375102 16.759 0.48915 15.543 15.216 15.705 -1.2159 0.03715 4.037E-05 NaN 1.1933 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 687700 19676 5927 12847 12851 0.007579372177588084 HPSTVLEQKL 10 Unmodified _HPSTVLEQKL_ 0 0 0 REV__nc|nan|Q9H972-2|C14orf93 REV__nc|nan|Q9H972-2|C14orf93 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3228759765625 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 83.778 1 83.778 83.278 84.278 0 0 0 0 2.8426 1 16335 16335 0.013265 0 1 + 19677 14740 12848 12852 19589 19589 0.06533086051808823 HPTHRVLF 8 Unmodified _HPTHRVLF_ 0 0 0 REV__ENSG00000138813|ENST00000326581|C4orf17 REV__ENSG00000138813|ENST00000326581|C4orf17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.19146728515625 3 336.190888 1005.55083 0.37937 0.00012754 1.5795 0.00053101 1.9589 0.00065855 336.19133769557726 29.107 0.66958 27.151 26.912 27.581 -1.9561 23 18 2 0 0 0 0.86089 1 5201 5201 1.6526 0.45928 1 309320 + 19678 16496 12849 12853 19590 19590 0.048280194654239494 HPTHRVLF 8 Unmodified _HPTHRVLF_ 0 0 0 REV__ENSG00000138813|ENST00000326581|C4orf17 REV__ENSG00000138813|ENST00000326581|C4orf17 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 336.190888 1005.55083 0.37937 0.00012754 1.5795 0.00053101 1.9589 0.00065855 336.19133769557726 29.107 0.66958 27.151 26.912 27.581 -1.9561 -0.086466 -0.00038521 NaN 1.6526 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 309320 + 19679 16496 12849 12853 0.048280194654239494 HPTHRVLF 8 Unmodified _HPTHRVLF_ 0 0 0 REV__ENSG00000138813|ENST00000326581|C4orf17 REV__ENSG00000138813|ENST00000326581|C4orf17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 336.190888 1005.55083 0.3224 0.00010839 1.858 0.00062465 2.1804 0.00073304 336.19141910937566 29.094 0.63447 27.202 26.912 27.547 -1.8928 -0.03582 -0.00010429 NaN 1.6526 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 312530 + 19680 16496 12849 12853 0.048280194654239494 HPTRSARWRT 10 Unmodified _HPTRSARWRT_ 0 0 0 ENSG00000278195|ENST00000610913|SSTR3 ENSG00000278195|ENST00000610913|SSTR3 ENSG00000278195|ENST00000610913|SSTR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1798095703125 4 317.674623 1266.66939 -2.2644 -0.00071933 0.97128 0.00030855 -1.2931 -0.00041078 317.6749720788995 15.645 1.4876 14.292 13.783 15.27 -1.3534 146 42 6 0 0 0 0.91149 1 2260 2260 0 0 1 63684000 19681 8040 12850 12854 19591 19591 0.04671766703131652 HPTSCPPY 8 Unmodified _HPTSCPPY_ 0 0 0 ENST00000302538.9_1_17:909091-909271:-|nuORF ENST00000302538.9_1_17:909091-909271:-|nuORF ENST00000302538.9_1_17:909091-909271:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 451.25311279296875 2 451.19727 900.379988 NaN NaN NaN NaN NaN NaN NaN 70.478 1 67.229 66.729 67.729 -3.2492 0 0 0 0.21486 1 13715 13715 11.114 1.767 1 19682 8575 12851 12855 19592 19592 -0.07418678968224413 HPVFLRPP 8 Unmodified _HPVFLRPP_ 0 0 0 REV__nc|ENSG00000100842|O43281-3|EFS REV__nc|ENSG00000100842|O43281-3|EFS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78216552734375 2 481.782162 961.549771 NaN NaN NaN NaN NaN NaN NaN 15.834 1 14.612 14.112 15.112 -1.2219 0 0 0 0.21486 1 2243 2243 5.7604 1.0044 1 + 19683 14744 12852 12856 19593 19593 0.06745805096511504 HPVFLRPP 8 Unmodified _HPVFLRPP_ 0 0 0 REV__nc|ENSG00000100842|O43281-3|EFS REV__nc|ENSG00000100842|O43281-3|EFS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7828674316406 2 481.782162 961.549771 NaN NaN NaN NaN NaN NaN NaN 18.459 1 17.134 16.634 17.634 -1.3251 0 0 0 0.2396 1 2770 2770 0.0082765 0 1 + 19684 14744 12852 12856 19594 19594 0.06745805096511504 HPVPHSHH 8 Unmodified _HPVPHSHH_ 0 0 0 REV__ENST00000391832.7_1_19:50375134-50376320:-|nuORF REV__ENST00000391832.7_1_19:50375134-50376320:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.28448486328125 3 316.491337 946.452182 -1.7078 -0.0005405 0.20317 6.4303E-05 -1.5046 -0.0004762 316.4913738537529 19.392 0.24358 17.757 17.634 17.878 -1.6351 10 6 2 0 0 0 1.0276 1 2899 2899 0.45834 0 1 306080 + 19685 21203 12853 12857 19595 19595 -0.023185837796290798 HPVSGFRR 8 Unmodified _HPVSGFRR_ 0 0 0 REV__nc|ENSG00000137513|Q96I59-2|NARS2 REV__nc|ENSG00000137513|Q96I59-2|NARS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7384033203125 2 478.264668 954.514782 NaN NaN NaN NaN NaN NaN NaN 52.398 1 49.303 48.803 49.803 -3.0954 0 0 0 0.23749 1 9671 9671 0.0082765 0 1 + 19686 16397 12854 12858 19596 19596 0.035705622885643606 HPWRGERLQEA 11 Unmodified _HPWRGERLQEA_ 0 0 0 REV__ENST00000540326.5_1_9:127113222-127113528:+|nuORF REV__ENST00000540326.5_1_9:127113222-127113528:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2387390136719 3 460.237337 1377.69018 NaN NaN NaN NaN NaN NaN NaN 70.276 1 67.027 66.527 67.527 -3.2492 0 0 0 0.22632 1 13676 13676 0.0059557 0 1 + 19687 22855 12855 12859 19597 19597 0.016443122921373288 HPWRGERLQEA 11 Unmodified _HPWRGERLQEA_ 0 0 0 REV__ENST00000540326.5_1_9:127113222-127113528:+|nuORF REV__ENST00000540326.5_1_9:127113222-127113528:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2390441894531 3 460.237337 1377.69018 NaN NaN NaN NaN NaN NaN NaN 70.727 1 67.478 66.978 67.978 -3.2492 0 0 0 0.22632 1 13769 13769 0.03141 0 1 + 19688 22855 12855 12859 19598 19598 0.016443122921373288 HPWRGERLQEA 11 Unmodified _HPWRGERLQEA_ 0 0 0 REV__ENST00000540326.5_1_9:127113222-127113528:+|nuORF REV__ENST00000540326.5_1_9:127113222-127113528:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2392883300781 3 460.237337 1377.69018 NaN NaN NaN NaN NaN NaN NaN 69.748 1 66.358 65.858 66.858 -3.3903 0 0 0 0.22632 1 13196 13196 0.03141 0 1 + 19689 22855 12855 12859 19599 19599 0.016443122921373288 HPWRGERLQEA 11 Unmodified _HPWRGERLQEA_ 0 0 0 REV__ENST00000540326.5_1_9:127113222-127113528:+|nuORF REV__ENST00000540326.5_1_9:127113222-127113528:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.239013671875 3 460.237337 1377.69018 NaN NaN NaN NaN NaN NaN NaN 69.993 1 66.526 66.026 67.026 -3.467 0 0 0 0.22632 1 13246 13246 0.03141 0 1 + 19690 22855 12855 12859 19600 19600 0.016443122921373288 HPWRGERLQEA 11 Unmodified _HPWRGERLQEA_ 0 0 0 REV__ENST00000540326.5_1_9:127113222-127113528:+|nuORF REV__ENST00000540326.5_1_9:127113222-127113528:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2389831542969 3 460.237337 1377.69018 NaN NaN NaN NaN NaN NaN NaN 70.438 1 66.971 66.471 67.471 -3.467 0 0 0 0.22632 1 13342 13342 0.03141 0 1 + 19691 22855 12855 12859 19601 19601 0.016443122921373288 HQDPKKCT 8 Unmodified _HQDPKKCT_ 0 0 0 REV__nc|ENSG00000136960|Q13822-2|ENPP2 REV__nc|ENSG00000136960|Q13822-2|ENPP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.732421875 2 478.734551 955.45455 NaN NaN NaN NaN NaN NaN NaN 96.538 1 92.618 92.118 93.118 -3.9194 0 0 0 0.23107 1 18522 18522 0.12286 0 1 + 19692 24054 12856 12860 19602 19602 -0.02495916156851763 HQDRESSGSNQ 11 Unmodified _HQDRESSGSNQ_ 0 0 0 HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|165|3|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|165|3|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|165|3|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7661743164062 2 622.766154 1243.51776 NaN NaN NaN NaN NaN NaN NaN 14.957 1 13.735 13.235 14.235 -1.2219 0 0 0 0.22632 1 2062 2062 0 0 1 19693 11879 12857 12861 19603 19603 -0.09426303905888744 HQEDSKKWRNR 11 Unmodified _HQEDSKKWRNR_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3809814453125 2 742.37928 1482.74401 NaN NaN NaN NaN NaN NaN NaN 139.13 1 134.28 133.78 134.78 -4.8492 0 0 0 0.22632 1 26819 26819 0.026206 0 1 19694 4041 12858 12862 19604 19604 0.021944847238273724 HQGHVKLT 8 Unmodified _HQGHVKLT_ 0 0 0 ENST00000472940.5_1_17:58008327-58013674:+|nuORF;nc|ENSG00000108443|P23443-4|RPS6KB1;nc|ENSG00000108443|P23443-3|RPS6KB1;nc|ENSG00000108443|P23443-5|RPS6KB1;nc|ENSG00000108443|P23443-2|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1;ENST00000441215.2_1_17:20619798-20628177:+|nuORF ENST00000472940.5_1_17:58008327-58013674:+|nuORF ENST00000472940.5_1_17:58008327-58013674:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2362976074219 2 460.259051 918.503549 NaN NaN NaN NaN NaN NaN NaN 18.298 1 16.783 16.283 17.283 -1.5148 0 0 0 0.21486 1 2704 2704 4.756 0 1 19695 2474 12859 12863 19605 19605 0.04103740194398142 HQGLLGMDP 9 Unmodified _HQGLLGMDP_ 0 0 0 nc|ENSG00000126822|A1L390-2|PLEKHG3;nc|ENSG00000126822|A1L390-3|PLEKHG3;ENSG00000126822|ENST00000247226|PLEKHG3;PLEKHG3|p.P557Qfs*19|1|0.1|ENSG00000126822|chr14:64741182-64741182|C/-|frameshift_variant nc|ENSG00000126822|A1L390-2|PLEKHG3 nc|ENSG00000126822|A1L390-2|PLEKHG3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1602478027344 3 323.160377 966.459301 NaN NaN NaN NaN NaN NaN NaN 104.67 1 100.45 99.948 100.95 -4.2183 0 0 0 0.23508 1 20592 20592 2.4985 0 1 19696 3449 12860 12864 19606 19606 -0.025270320140862168 HQGLWRKP 8 Unmodified _HQGLWRKP_ 0 0 0 REV__ENST00000594250.5_2_19:35831898-35831997:+|nuORF REV__ENST00000594250.5_2_19:35831898-35831997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.17938232421875 3 341.194521 1020.56173 NaN NaN NaN NaN NaN NaN NaN 111.17 1 106.94 106.44 107.44 -4.2289 0 0 0 0.21486 1 21395 21395 1.4819 1.0236 1 + 19697 23366 12861 12865 19607 19607 0.05227421839697399 HQGWDDPL 8 Unmodified _HQGWDDPL_ 0 0 0 REV__nc|ENSG00000168228|Q9H5U6-2|ZCCHC4 REV__nc|ENSG00000168228|Q9H5U6-2|ZCCHC4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.1470947265625 3 323.147125 966.419545 NaN NaN NaN NaN NaN NaN NaN 116.37 1 116.37 115.87 116.87 0 0 0 0 0.21486 1 22915 22915 1.3295 0.87119 1 + 19698 18007 12862 12866 19608 19608 -0.06500835693145746 HQHIGKPSTIR 11 Unmodified _HQHIGKPSTIR_ 0 0 0 ENST00000435269.1_1_3:174095525-174095792:+|nuORF;ENST00000529920.5_1_8:146015191-146016147:-|nuORF;ENSG00000161016|ENST00000528957|RPL8 ENST00000435269.1_1_3:174095525-174095792:+|nuORF ENST00000435269.1_1_3:174095525-174095792:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2424011230469 3 425.242311 1272.7051 -0.0036981 -1.5726E-06 0.20275 8.6217E-05 0.19905 8.4645E-05 425.24247438181465 15.002 0.2471 15.002 14.878 15.125 0 15 6 3 0 0 0 0.45612 1 2263 2263 32.518 26.284 1 1179900 19699 5281 12863 12867 19609 19609 0.07965804160107837 HQHIGKPSTIR 11 Unmodified _HQHIGKPSTIR_ 0 0 0 ENST00000435269.1_1_3:174095525-174095792:+|nuORF;ENST00000529920.5_1_8:146015191-146016147:-|nuORF;ENSG00000161016|ENST00000528957|RPL8 ENST00000435269.1_1_3:174095525-174095792:+|nuORF ENST00000435269.1_1_3:174095525-174095792:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2423095703125 3 425.242311 1272.7051 -0.59019 -0.00025097 0.63658 0.0002707 0.046394 1.9729E-05 425.2425946320674 16.191 0.41986 14.975 14.762 15.182 -1.2159 23 11 3 0 0 0 0.66381 2 2557 2514;2557 14.21 8.4268 1 872900 19700 5281 12863 12867 19610;19611 19611 0.07965804160107837 HQHIGKPSTIR 11 Unmodified _HQHIGKPSTIR_ 0 0 0 ENST00000435269.1_1_3:174095525-174095792:+|nuORF;ENST00000529920.5_1_8:146015191-146016147:-|nuORF;ENSG00000161016|ENST00000528957|RPL8 ENST00000435269.1_1_3:174095525-174095792:+|nuORF ENST00000435269.1_1_3:174095525-174095792:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2420654296875 3 425.242311 1272.7051 -0.5509 -0.00023426 0.61105 0.00025985 0.06016 2.5582E-05 425.2427670309103 16.249 0.30715 15.027 14.855 15.162 -1.2219 12 8 2 0 0 0 0.61034 1 2313 2313 17.572 8.3281 1 312760 19701 5281 12863 12867 19612 19612 0.07965804160107837 HQKHYFHRFLR 11 Unmodified _HQKHYFHRFLR_ 0 0 0 REV__PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant REV__PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6841430664062 3 523.616371 1567.82728 NaN NaN NaN NaN NaN NaN NaN 151.42 1 146.19 145.69 146.69 -5.2365 0 0 0 0.22632 1 29350 29350 1.4551 1.4546 1 + 19702 15312 12864 12868 19613 19613 0.0660826596233619 HQKLAGVTALN 11 Unmodified _HQKLAGVTALN_ 0 0 0 ENST00000402650.1_1_6:71874941-71875379:+|nuORF ENST00000402650.1_1_6:71874941-71875379:+|nuORF ENST00000402650.1_1_6:71874941-71875379:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3185424804688 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 113.8 1 113.8 113.3 114.3 0 0 0 0 0.22632 1 22379 22379 0.172 0 1 19703 9517 12865 12869 19614 19614 0.0765590814596635 HQPQRFKDELW 11 Unmodified _HQPQRFKDELW_ 0 0 0 nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2;nc|ENSG00000170854|Q8IUF8-2|RIOX2 nc|ENSG00000170854|Q8IUF8-4|RIOX2 nc|ENSG00000170854|Q8IUF8-4|RIOX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3880615234375 2 742.375675 1482.7368 NaN NaN NaN NaN NaN NaN NaN 172.43 1 167.64 167.14 168.14 -4.7898 0 0 0 0.22632 1 35126 35126 5.4027 5.3765 1 19704 6104 12866 12870 19615 19615 0.014737521234337692 HQQCIRFINFY 11 Unmodified _HQQCIRFINFY_ 0 0 0 REV__ENSG00000188394|ENST00000616002|GPR21 REV__ENSG00000188394|ENST00000616002|GPR21 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.264404296875 3 490.243323 1467.70814 NaN NaN NaN NaN NaN NaN NaN 62.94 1 59.979 59.479 60.479 -2.9614 0 0 0 0.22632 1 12149 12149 0.026206 0 1 + 19705 19145 12867 12871 19616 19616 -0.007006887773513881 HQQQQVQQRTL 11 Unmodified _HQQQQVQQRTL_ 0 0 0 ENSG00000140396|ENST00000452400|NCOA2;ENST00000518287.6_1_8:71025838-71050550:-|nuORF ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2479248046875 3 465.248013 1392.72221 NaN NaN NaN NaN NaN NaN NaN 86.094 1 82.367 81.867 82.867 -3.727 0 0 0 0.22632 1 16830 16830 0.58532 0.55391 1 19706 4296 12868 12872 19617 19617 0.04155679975269777 HQRIHTMEKQ 10 Unmodified _HQRIHTMEKQ_ 0 0 0 nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181;ENSG00000197841|ENST00000492450|ZNF181 nc|ENSG00000197841|Q2M3W8-2|ZNF181 nc|ENSG00000197841|Q2M3W8-2|ZNF181 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2287292480469 3 436.559422 1306.65644 -0.18328 -8.0014E-05 -0.15731 -6.8673E-05 -0.34059 -0.00014869 436.559260593706 85.861 0.61494 82.135 81.865 82.48 -3.7255 37 16 3 0 0 0 0.458 1 16774 16774 0.063865 0 1 1582800 19707 7403 12869 12873 19618 19618 0.015375675287259583 HQRQRERYWK 10 Unmodified _HQRQRERYWK_ 0 0 0 REV__EFCAB12|p.R336W|1|0.34|ENSG00000172771|chr3:129411187-129411187|G/A|missense_variant REV__EFCAB12|p.R336W|1|0.34|ENSG00000172771|chr3:129411187-129411187|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 496.2637634277344 3 496.263997 1485.77016 NaN NaN NaN NaN NaN NaN NaN 165.97 1 161.02 160.52 161.52 -4.9484 0 0 0 2.8426 1 32473 32473 0.063865 0 1 + 19708 13782 12870 12874 19619 19619 0.04670798685970112 HQRRYHEQRRY 11 Unmodified _HQRRYHEQRRY_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7874755859375 3 543.613689 1627.81924 NaN NaN NaN NaN NaN NaN NaN 44.923 1 42.1 41.6 42.6 -2.8236 0 0 0 0.23698 1 8146 8146 0.094841 0.011491 1 + 19709 14875 12871 12875 19620 19620 0.030440869749099875 HQTRPINCM 9 Unmodified _HQTRPINCM_ 0 0 0 REV__ENST00000579637.1_1_17:62525485-62528217:+|nuORF REV__ENST00000579637.1_1_17:62525485-62528217:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.0699462890625 3 367.176032 1098.50627 NaN NaN NaN NaN NaN NaN NaN 131.27 1 126.5 126 127 -4.7725 0 0 0 0.23508 1 25272 25272 2.4985 1.427 1 + 19710 23228 12872 12876 19621 19621 -0.03904495734605007 HRAPGAEEDDS 11 Unmodified _HRAPGAEEDDS_ 0 0 0 nc|ENSG00000074356|Q53F19-2|NCBP3;ENSG00000074356|ENST00000389005|NCBP3 nc|ENSG00000074356|Q53F19-2|NCBP3 nc|ENSG00000074356|Q53F19-2|NCBP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.1971435546875 3 395.170658 1182.49014 NaN NaN NaN NaN NaN NaN NaN 64.352 1 61.355 60.855 61.855 -2.9975 0 0 0 0.23698 1 12446 12446 2.6312 1.5598 1 19711 1497 12873 12877 19622 19622 -0.09380207166123 HRCEPEQIE 9 Unmodified _HRCEPEQIE_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2128601074219 3 380.841595 1139.50296 -0.21333 -8.1244E-05 -2.8296 -0.0010776 -3.0429 -0.0011589 380.8403012764924 16.608 0.20613 16.608 16.507 16.714 0 7 5 2 0 0 0 0.87876 1 2570 2570 6.1918 2.8722 1 273420 + 19712 19273 12874 12878 19623 19623 -0.06121467307616513 HRCEPEQIE 9 Unmodified _HRCEPEQIE_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.841595 1139.50296 -0.36358 -0.00013847 -2.2899 -0.00087208 -2.6535 -0.0010105 380.84063255344876 17.926 0.21303 16.615 16.511 16.725 -1.3109 0.01571 -0.0006598 NaN 6.1918 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 321520 + 19713 19273 12874 12878 -0.06121467307616513 HRCEPEQIE 9 Unmodified _HRCEPEQIE_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 380.841595 1139.50296 -1.8943 -0.00072141 -0.93085 -0.00035451 -2.8251 -0.0010759 380.8411860224297 18.089 0.17714 16.575 16.435 16.612 -1.5148 -0.024721 0.00089291 NaN 6.1918 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 192830 + 19714 19273 12874 12878 -0.06121467307616513 HRCGRSHQQDH 11 Unmodified _HRCGRSHQQDH_ 0 0 0 REV__SLC25A34|p.M214Hfs*110|1|0.38|ENSG00000162461|chr1:15738629-15738630|-/G|frameshift_variant REV__SLC25A34|p.M214Hfs*110|1|0.38|ENSG00000162461|chr1:15738629-15738630|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75469970703125 3 454.206042 1359.5963 NaN NaN NaN NaN NaN NaN NaN 90.139 1 86.28 85.78 86.78 -3.8595 0 0 0 0.22632 1 17635 17635 0.11104 0 1 + 19715 24633 12875 12879 19624 19624 -0.06911730081810674 HRCLAALPP 9 Unmodified _HRCLAALPP_ 0 0 0 ENST00000479767.1_1_9:139651724-139651862:-|nuORF ENST00000479767.1_1_9:139651724-139651862:-|nuORF ENST00000479767.1_1_9:139651724-139651862:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2738037109375 2 489.271104 976.527655 0.065866 3.2227E-05 -0.12984 -6.3527E-05 -0.063973 -3.13E-05 489.27107435611765 59.022 1.5064 56.112 55.372 56.878 -2.9105 98 42 4 0 0 0 0.54354 1 11405 11405 16.942 0 1 92481000 19716 10349 12876 12880 19625 19625 0.038452573564200065 HRDFENRDRYY 11 Unmodified _HRDFENRDRYY_ 0 0 0 ENSG00000166896|ENST00000300145|ATP23 ENSG00000166896|ENST00000300145|ATP23 ENSG00000166896|ENST00000300145|ATP23 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6907958984375 3 524.243039 1569.70729 0.57989 0.000304 1.0846 0.00056857 1.6644 0.00087257 524.243627247572 114.88 0.81248 110.57 110.17 110.98 -4.3136 80 22 5 0 0 0 0.88957 1 22148 22148 0.58532 0 1 18840000 19717 5762 12877 12881 19626 19626 -0.05477811892728823 HRDGRDCEAAD 11 Unmodified _HRDGRDCEAAD_ 0 0 0 nc|ENSG00000176406|Q9UQ26-3|RIMS2 nc|ENSG00000176406|Q9UQ26-3|RIMS2 nc|ENSG00000176406|Q9UQ26-3|RIMS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7647705078125 2 622.757275 1243.5 NaN NaN NaN NaN NaN NaN NaN 70.707 1 67.127 66.627 67.627 -3.5798 0 0 0 0.22632 1 13329 13329 0.0059557 0.0025752 1 19718 12479 12878 12882 19627 19627 -0.11201342432423189 HRDLGIFW 8 Unmodified _HRDLGIFW_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2734985351562 2 522.274701 1042.53485 NaN NaN NaN NaN NaN NaN NaN 174.59 1 174.59 174.09 175.09 0 0 0 0 0.21486 1 36148 36148 5.2307 0 1 19719 1764 12879 12883 19628 19628 0.015283132285276224 HREKEDRWKER 11 Unmodified _HREKEDRWKER_ 0 0 0 REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6875610351562 3 523.6062 1567.79677 NaN NaN NaN NaN NaN NaN NaN 73.701 1 70.024 69.524 70.524 -3.6764 0 0 0 0.22632 1 13931 13931 5.4027 4.8968 1 + 19720 17933 12880 12884 19629 19629 0.03558442786652449 HRFVRRLLYFY 11 Unmodified _HRFVRRLLYFY_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;RICTOR|p.K678Nfs*14|1|0.2|ENSG00000164327|chr5:38959796-38959796|T/-|frameshift_variant;RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.394775390625 2 785.443695 1568.87284 NaN NaN NaN NaN NaN NaN NaN 152.68 1 147.41 146.91 147.91 -5.2669 0 0 0 0.22632 1 29605 29605 0.172 0.14579 1 19721 5534 12881 12885 19630 19630 0.11115491424766333 HRGAVVVL 8 Unmodified _HRGAVVVL_ 0 0 0 nc|ENSG00000140553|Q9H3U1-3|UNC45A;ENST00000471780.1_1_15:91493362-91496943:+|nuORF;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A nc|ENSG00000140553|Q9H3U1-3|UNC45A nc|ENSG00000140553|Q9H3U1-3|UNC45A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24517822265625 2 425.766512 849.518471 -0.35517 -0.00015122 0.5538 0.00023579 0.19863 8.457E-05 425.76668028892885 55.076 0.71987 52.192 51.839 52.559 -2.8837 48 20 3 0 0 0 0.8748 1 10601 10601 14.838 8.6325 1 16513000 19722 4312 12882 12886 19631 19631 0.08769232062422816 HRGAVVVL 8 Unmodified _HRGAVVVL_ 0 0 0 nc|ENSG00000140553|Q9H3U1-3|UNC45A;ENST00000471780.1_1_15:91493362-91496943:+|nuORF;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A nc|ENSG00000140553|Q9H3U1-3|UNC45A nc|ENSG00000140553|Q9H3U1-3|UNC45A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25177001953125 2 425.766512 849.518471 -0.28633 -0.00012191 0.49715 0.00021167 0.21082 8.976E-05 425.7666792538555 55.303 0.72184 52.165 51.799 52.521 -3.1377 33 20 2 0 0 0 0.26367 1 10254 10254 63.563 31.446 1 13428000 19723 4312 12882 12886 19632 19632 0.08769232062422816 HRGAVVVL 8 Unmodified _HRGAVVVL_ 0 0 0 nc|ENSG00000140553|Q9H3U1-3|UNC45A;ENST00000471780.1_1_15:91493362-91496943:+|nuORF;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A nc|ENSG00000140553|Q9H3U1-3|UNC45A nc|ENSG00000140553|Q9H3U1-3|UNC45A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 425.766512 849.518471 0.031352 1.3348E-05 0.19129 8.1444E-05 0.22264 9.4792E-05 425.7665271878237 55.26 0.76181 52.125 51.785 52.546 -3.1352 -0.03562 -0.00017583 NaN 74.396 50 21 3 NaN NaN NaN NaN 0 NaN NaN 0 12874000 19724 4312 12882 12886 0.08769232062422816 HRGKVCLHH 9 Unmodified _HRGKVCLHH_ 0 0 0 ENST00000455245.1_1_9:68413626-68413875:-|nuORF ENST00000455245.1_1_9:68413626-68413875:-|nuORF ENST00000455245.1_1_9:68413626-68413875:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7890014648438 2 543.790527 1085.5665 NaN NaN NaN NaN NaN NaN NaN 48.717 1 45.71 45.21 46.21 -3.0068 0 0 0 0.19657 1 8921 8921 4.897 4.8532 1 19725 10019 12883 12887 19633 19633 0.027139827107930614 HRGTARSLIFD 11 Unmodified _HRGTARSLIFD_ 0 0 0 REV__FAM47E|p.G363Afs*26|1|0.14|ENSG00000189157|chr4:76280322-76280322|G/-|frameshift_variant REV__FAM47E|p.G363Afs*26|1|0.14|ENSG00000189157|chr4:76280322-76280322|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2431945800781 3 424.898432 1271.67347 0.70327 0.00029882 0.33551 0.00014256 1.0388 0.00044138 425.2328565569871 27.981 0.72889 26.025 25.635 26.364 -1.9561 26 20 2 0 0 0 0.93557 1 4966 4966 14.838 6.0861 1 2740200 + 19726 23518 12884 12888 19634 19634 0.04849811406165827 HRHLGRQWL 9 Unmodified _HRHLGRQWL_ 0 0 0 REV__ENST00000265388.9_1_7:128595269-128597299:-|nuORF REV__ENST00000265388.9_1_7:128595269-128597299:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2868041992188 2 601.836323 1201.65809 0.3949 0.00023767 0.43992 0.00026476 0.83482 0.00050242 602.3384075295279 149.86 0.21324 149.86 149.7 149.91 0 7 5 2 0 0 0 0.6231 1 30001 30001 0.40827 0.14288 1 2177700 + 19727 20244 12885 12889 19635 19635 0.06532989399670441 HRIFHLQQ 8 Unmodified _HRIFHLQQ_ 0 0 0 REV__ENSG00000100288|ENST00000406938|CHKB REV__ENSG00000100288|ENST00000406938|CHKB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 108.15 1 108.15 107.65 108.65 0 0 0 0 0.21486 1 21266 21266 1.4819 0 1 + 19728 14685 12886 12890 19636 19636 0.047508068684237514 HRKEWQERWTN 11 Unmodified _HRKEWQERWTN_ 0 0 0 tr|U7SMP4|U7SMP4_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01771PE=4SV=1 tr|U7SMP4|U7SMP4_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01771PE=4SV=1 tr|U7SMP4|U7SMP4_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01771PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3871459960938 2 785.387105 1568.75966 NaN NaN NaN NaN NaN NaN NaN 107.23 1 102.91 102.41 103.41 -4.32 0 0 0 0.22632 1 21115 21115 0 0 1 19729 26013 12887 12891 19637 19637 -0.0019722875911156734 HRKFRKRRWLF 11 Unmodified _HRKFRKRRWLF_ 0 0 0 REV__FOXD3|p.R232W|1|0.32|ENSG00000187140|chr1:63323752-63323752|C/T|missense_variant REV__FOXD3|p.R232W|1|0.32|ENSG00000187140|chr1:63323752-63323752|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3616333007812 2 815.489302 1628.96405 NaN NaN NaN NaN NaN NaN NaN 174.77 1 174.77 174.27 175.27 0 0 0 0 0.22632 1 36191 36191 0 0 1 + 19730 23547 12888 12892 19638 19638 0.1747279991270716 HRKHLGGQL 9 Unmodified _HRKHLGGQL_ 0 0 0 ENSG00000164161|ENST00000296575|HHIP ENSG00000164161|ENST00000296575|HHIP ENSG00000164161|ENST00000296575|HHIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.692138671875 2 523.304324 1044.5941 -0.18209 -9.529E-05 -2.14 -0.0011198 -2.322 -0.0012151 523.3018062852966 130.06 0.17728 125.42 125.3 125.47 -4.6359 6 4 2 0 0 0 0.46598 1 25627 25627 1.2148 0.83524 1 767190 19731 5515 12889 12893 19639 19639 0.0735820924271593 HRKKCCFRY 9 Unmodified _HRKKCCFRY_ 0 0 0 REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6 REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.778076171875 2 620.813144 1239.61174 0.99544 0.00061798 0.61228 0.00038011 1.6077 0.00099809 620.8135010487543 100.81 1.1111 96.651 96.22 97.331 -4.1594 109 31 5 0 0 0 0.62102 2 19820 19820;19843 11.64 11.64 1 86423000 + 19732 19172 12890 12894 19640;19641 19640 0.0015146518169331102 HRKKLSLI 8 Unmodified _HRKKLSLI_ 0 0 0 REV__ENSG00000185869|ENST00000391711|ZNF829 REV__ENSG00000185869|ENST00000391711|ZNF829 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.2219543457031 3 332.222188 993.644734 NaN NaN NaN NaN NaN NaN NaN 121.2 1 116.67 116.17 117.17 -4.5305 0 0 0 0.21486 1 23337 23337 1.6526 0 1 + 19733 18993 12891 12895 19642 19642 0.14765738567712106 HRKWKDDKSHF 11 Unmodified _HRKWKDDKSHF_ 0 0 0 ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1;LCLAT1|p.L224*|1|0.07|ENSG00000172954|chr2:30568104-30568158|CTTCAGAAATATGAATATGTTTTACATCCAAGAACTACAGGCTTTACTTTTGTGG/-|frameshift_variant;LCLAT1|p.N222Mfs*21|1|0.33|ENSG00000172954|chr2:30568093-30568093|A/-|frameshift_variant;nc|ENSG00000172954|Q6UWP7-2|LCLAT1 ENSG00000172954|ENST00000379509|LCLAT1 ENSG00000172954|ENST00000379509|LCLAT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3811645507812 2 742.381291 1482.74803 NaN NaN NaN NaN NaN NaN NaN 108.26 1 103.85 103.35 104.35 -4.4121 0 0 0 0.2367 1 20771 20771 2.9952 0 1 19734 6256 12892 12896 19643 19643 0.025965742175230844 HRKYYNVFWE 10 Unmodified _HRKYYNVFWE_ 0 0 0 ENST00000339950.4_1_1:62910443-62910506:+|nuORF ENST00000339950.4_1_1:62910443-62910506:+|nuORF ENST00000339950.4_1_1:62910443-62910506:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23846435546875 3 481.238566 1440.69387 NaN NaN NaN NaN NaN NaN NaN 128.24 1 128.24 127.74 128.74 0 0 0 0 2.8426 1 25325 25325 0.043787 0.017581 1 19735 8842 12893 12897 19644 19644 -0.008850179340242903 HRKYYNVFWE 10 Unmodified _HRKYYNVFWE_ 0 0 0 ENST00000339950.4_1_1:62910443-62910506:+|nuORF ENST00000339950.4_1_1:62910443-62910506:+|nuORF ENST00000339950.4_1_1:62910443-62910506:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23883056640625 3 481.238566 1440.69387 NaN NaN NaN NaN NaN NaN NaN 126.72 1 122.1 121.6 122.6 -4.6172 0 0 0 2.8426 1 24989 24989 0.063865 0 1 19736 8842 12893 12897 19645 19645 -0.008850179340242903 HRKYYNVFWE 10 Unmodified _HRKYYNVFWE_ 0 0 0 ENST00000339950.4_1_1:62910443-62910506:+|nuORF ENST00000339950.4_1_1:62910443-62910506:+|nuORF ENST00000339950.4_1_1:62910443-62910506:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2418518066406 3 481.238566 1440.69387 NaN NaN NaN NaN NaN NaN NaN 129.81 1 125.18 124.68 125.68 -4.6293 0 0 0 2.8426 1 25582 25582 0.26539 0 1 19737 8842 12893 12897 19646 19646 -0.008850179340242903 HRKYYNVFWE 10 Unmodified _HRKYYNVFWE_ 0 0 0 ENST00000339950.4_1_1:62910443-62910506:+|nuORF ENST00000339950.4_1_1:62910443-62910506:+|nuORF ENST00000339950.4_1_1:62910443-62910506:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23828125 3 481.238566 1440.69387 NaN NaN NaN NaN NaN NaN NaN 150.65 1 145.92 145.42 146.42 -4.7323 0 0 0 2.8426 1 29924 29924 0.043787 0.043223 1 19738 8842 12893 12897 19647 19647 -0.008850179340242903 HRLQMLEEEY 10 Unmodified _HRLQMLEEEY_ 0 0 0 REV__KRT23|p.T341M|1|0.26|ENSG00000108244|chr17:40925474-40925474|G/A|missense_variant REV__KRT23|p.T341M|1|0.26|ENSG00000108244|chr17:40925474-40925474|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.88397216796875 3 449.883572 1346.62889 NaN NaN NaN NaN NaN NaN NaN 163.51 1 158.72 158.22 159.22 -4.7898 0 0 0 0.22588 1 32599 32599 1.9064 0.1641 1 + 19739 23737 12894 12898 19648 19648 -0.030563805221618168 HRLSKVVS 8 Unmodified _HRLSKVVS_ 0 0 0 ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;ZFYVE26|p.D2513Mfs*3|1|0.29|ENSG00000072121|chr14:67748519-67748519|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ZFYVE26|p.P1734Lfs*10|1|0.08|ENSG00000072121|chr14:67775880-67775880|G/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF ENST00000554523.5_1_14:68228796-68282710:-|nuORF ENST00000554523.5_1_14:68228796-68282710:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 309.1905517578125 3 309.190776 924.550499 NaN NaN NaN NaN NaN NaN NaN 103.86 1 99.805 99.305 100.31 -4.0543 0 0 0 0.21486 1 19970 19970 1.4819 0 1 19740 1458 12895 12899 19649 19649 0.0852059974556596 HRMRWKTRRNQ 11 Unmodified _HRMRWKTRRNQ_ 0 0 0 REV__NKX6-2|p.K205M|1|0.33|ENSG00000148826|chr10:132785136-132785136|T/A|missense_variant REV__NKX6-2|p.K205M|1|0.33|ENSG00000148826|chr10:132785136-132785136|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6848754882812 3 523.619898 1567.83786 NaN NaN NaN NaN NaN NaN NaN 149.49 1 144.29 143.79 144.79 -5.1994 0 0 0 0.22632 1 28958 28958 1.4074 1.2354 1 + 19741 24363 12896 12900 19650 19650 0.07665925345145297 HRNEVTVEL 9 Unmodified _HRNEVTVEL_ 0 0 0 ENSG00000102753|ENST00000261667|KPNA3;KPNA3|p.N437Tfs*3|2|0.41|ENSG00000102753|chr13:49705683-49705683|T/-|frameshift_variant ENSG00000102753|ENST00000261667|KPNA3 ENSG00000102753|ENST00000261667|KPNA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 366.2089538574219 3 366.196367 1095.56727 -0.39282 -0.00014385 0.20237 7.4109E-05 -0.19045 -6.9742E-05 366.1964759619137 64.565 1.5847 61.282 60.58 62.164 -3.2832 150 45 5 0 0 0 0.033253 2 12069 12069;12090 89.193 80.28 1 110610000 19742 2143 12897 12901 19651;19652 19651 0.023310558408638826 HRNEVTVEL 9 Unmodified _HRNEVTVEL_ 0 0 0 ENSG00000102753|ENST00000261667|KPNA3;KPNA3|p.N437Tfs*3|2|0.41|ENSG00000102753|chr13:49705683-49705683|T/-|frameshift_variant ENSG00000102753|ENST00000261667|KPNA3 ENSG00000102753|ENST00000261667|KPNA3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 366.196367 1095.56727 -0.21407 -7.8391E-05 -0.12181 -4.4606E-05 -0.33588 -0.000123 366.19635199810216 64.29 1.4897 61.293 60.733 62.223 -2.9975 0.02064 6.482E-05 NaN 89.193 158 42 6 NaN NaN NaN NaN 0 NaN NaN 0 150950000 19743 2143 12897 12901 0.023310558408638826 HRNEVTVEL 9 Unmodified _HRNEVTVEL_ 0 0 0 ENSG00000102753|ENST00000261667|KPNA3;KPNA3|p.N437Tfs*3|2|0.41|ENSG00000102753|chr13:49705683-49705683|T/-|frameshift_variant ENSG00000102753|ENST00000261667|KPNA3 ENSG00000102753|ENST00000261667|KPNA3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 366.196367 1095.56727 0.21555 7.8934E-05 -0.39658 -0.00014522 -0.18102 -6.6291E-05 366.1962348649328 64.7 1.4411 61.242 60.698 62.139 -3.4581 -0.03022 -0.00023704 NaN 89.193 137 40 5 NaN NaN NaN NaN 0 NaN NaN 0 122180000 19744 2143 12897 12901 0.023310558408638826 HRNSEEGY 8 Unmodified _HRNSEEGY_ 0 0 0 REV__LARP1B|p.S865Y|1|0.27|ENSG00000138709|chr4:128209902-128209902|C/A|missense_variant REV__LARP1B|p.S865Y|1|0.27|ENSG00000138709|chr4:128209902-128209902|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 495.79339599609375 2 496.215037 990.415522 0.22132 0.00010982 -0.49592 -0.00024608 -0.2746 -0.00013626 496.21488198050264 110.84 1.1165 110.84 110.43 111.55 0 67 31 3 0 0 0 0.89276 1 21862 21862 0.12286 0 1 9739500 + 19745 23788 12898 12902 19653 19653 -0.08006925186850822 HRPCKIEP 8 Unmodified _HRPCKIEP_ 0 0 0 HDX|p.L313Rfs*2|1|0.04|ENSG00000165259|chrX:84468779-84468785|GATGCCA/-|frameshift_variant;HDX|p.N259Tfs*58|1|0.92|ENSG00000165259|chrX:84468947-84468947|T/-|frameshift_variant;ENST00000472135.2_1_X:83695455-83724556:-|nuORF;HDX|p.S398Lfs*10|1|0.28|ENSG00000165259|chrX:84468531-84468531|A/-|frameshift_variant;nc|ENSG00000165259|Q7Z353-2|HDX;ENSG00000165259|ENST00000373177|HDX HDX|p.L313Rfs*2|1|0.04|ENSG00000165259|chrX:84468779-84468785|GATGCCA/-|frameshift_variant HDX|p.L313Rfs*2|1|0.04|ENSG00000165259|chrX:84468779-84468785|GATGCCA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26214599609375 2 490.260736 978.50692 NaN NaN NaN NaN NaN NaN NaN 16.637 1 15.421 14.921 15.921 -1.2159 0 0 0 0.2396 1 2627 2627 0.0082765 0 1 19746 5614 12899 12903 19654 19654 0.016806669767788662 HRPVNDVEL 9 Unmodified _HRPVNDVEL_ 0 0 0 REV__ENSG00000065357|ENST00000331886|DGKA REV__ENSG00000065357|ENST00000331886|DGKA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2127685546875 3 360.192845 1077.55671 -0.22702 -8.1773E-05 0.43848 0.00015794 0.21145 7.6164E-05 360.1929382813883 64.249 0.72876 61.251 60.91 61.639 -2.9975 45 20 3 0 0 0 0.62314 1 12485 12485 11.495 11.495 1 3324600 + 19747 14186 12900 12904 19655 19655 0.02103073186435722 HRPWRRGWHFY 11 Unmodified _HRPWRRGWHFY_ 0 0 0 LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant;LY75|p.K1412Rfs*2|4|0.39|ENSG00000054219|chr2:159816951-159816951|T/-|frameshift_variant;LY75|p.Q1410Tfs*6|1|0.07|ENSG00000054219|chr2:159816959-159816960|-/GGGTT|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75 LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2708129882812 3 533.272716 1596.79632 NaN NaN NaN NaN NaN NaN NaN 17.021 1 17.021 16.521 17.521 0 0 0 0 0.22632 1 2676 2676 0.58532 0.57936 1 19748 1261 12901 12905 19656 19656 0.02179112648127557 HRPWRRGWHFY 11 Unmodified _HRPWRRGWHFY_ 0 0 0 LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant;LY75|p.K1412Rfs*2|4|0.39|ENSG00000054219|chr2:159816951-159816951|T/-|frameshift_variant;LY75|p.Q1410Tfs*6|1|0.07|ENSG00000054219|chr2:159816959-159816960|-/GGGTT|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75 LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2756958007812 3 533.272716 1596.79632 NaN NaN NaN NaN NaN NaN NaN 66.301 1 66.301 65.801 66.801 0 0 0 0 0.22632 1 12801 12801 0.172 0.17144 1 19749 1261 12901 12905 19657 19657 0.02179112648127557 HRPWRRGWHFY 11 Unmodified _HRPWRRGWHFY_ 0 0 0 LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant;LY75|p.K1412Rfs*2|4|0.39|ENSG00000054219|chr2:159816951-159816951|T/-|frameshift_variant;LY75|p.Q1410Tfs*6|1|0.07|ENSG00000054219|chr2:159816959-159816960|-/GGGTT|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75 LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2813720703125 3 533.272716 1596.79632 NaN NaN NaN NaN NaN NaN NaN 154.38 1 154.38 153.88 154.88 0 0 0 0 0.22632 1 30943 30943 0.026206 0 1 19750 1261 12901 12905 19658 19658 0.02179112648127557 HRQQRRRLLRF 11 Unmodified _HRQQRRRLLRF_ 0 0 0 REV__nc|ENSG00000165006|Q9NZ09-3|UBAP1 REV__nc|ENSG00000165006|Q9NZ09-3|UBAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2653198242188 3 522.650186 1564.92873 -0.1652 -8.6344E-05 -3.2827 -0.0017157 -3.4479 -0.001802 522.6480371314672 141.35 0.16882 136.7 136.61 136.78 -4.6493 6 4 2 0 0 0 0.96225 1 27907 27907 0.45452 0.38125 1 2641200 + 19751 24144 12902 12906 19659 19659 0.16886137384904032 HRRFERERQRQ 11 Unmodified _HRRFERERQRQ_ 0 0 0 sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3;sp|F5H8S6|US24_HCMVMTegumentproteinUS24OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US24PE=3SV=1 sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3 sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2710571289062 3 533.289205 1596.84579 NaN NaN NaN NaN NaN NaN NaN 76.141 1 72.418 71.918 72.918 -3.7227 0 0 0 0.22632 1 14411 14411 0.172 0 1 19752 25714 12903 12907 19660 19660 0.07123775866261894 HRRKNWTERW 10 Unmodified _HRRKNWTERW_ 0 0 0 SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant;ENST00000534562.1_1_11:9749605-9771962:+|nuORF;ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70 SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26019287109375 3 490.260476 1467.7596 NaN NaN NaN NaN NaN NaN NaN 169.61 1 169.61 169.11 170.11 0 0 0 0 2.8426 1 34821 34821 0.043787 0.017581 1 19753 3815 12904 12908 19661 19661 0.04442816031541952 HRRKNWTERW 10 Unmodified _HRRKNWTERW_ 0 0 0 SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant;ENST00000534562.1_1_11:9749605-9771962:+|nuORF;ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70 SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2614440917969 3 490.260476 1467.7596 NaN NaN NaN NaN NaN NaN NaN 138.27 1 133.62 133.12 134.12 -4.6413 0 0 0 2.8426 1 27298 27298 0.043787 0 1 19754 3815 12904 12908 19662 19662 0.04442816031541952 HRRKNWTERW 10 Unmodified _HRRKNWTERW_ 0 0 0 SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant;ENST00000534562.1_1_11:9749605-9771962:+|nuORF;ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70 SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2717590332031 3 490.260476 1467.7596 NaN NaN NaN NaN NaN NaN NaN 138.48 1 133.84 133.34 134.34 -4.6413 0 0 0 2.8426 1 27343 27343 0.043787 0 1 19755 3815 12904 12908 19663 19663 0.04442816031541952 HRRKNWTERW 10 Unmodified _HRRKNWTERW_ 0 0 0 SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant;ENST00000534562.1_1_11:9749605-9771962:+|nuORF;ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70 SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2588195800781 3 490.260476 1467.7596 NaN NaN NaN NaN NaN NaN NaN 111.19 1 106.7 106.2 107.2 -4.4915 0 0 0 2.8426 1 21341 21341 0.043787 0.017581 1 19756 3815 12904 12908 19664 19664 0.04442816031541952 HRRKNWTERW 10 Unmodified _HRRKNWTERW_ 0 0 0 SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant;ENST00000534562.1_1_11:9749605-9771962:+|nuORF;ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70 SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25909423828125 3 490.260476 1467.7596 NaN NaN NaN NaN NaN NaN NaN 166.55 1 161.6 161.1 162.1 -4.9484 0 0 0 2.8426 1 32655 32655 0.043787 0.037832 1 19757 3815 12904 12908 19665 19665 0.04442816031541952 HRRKRRFRLLE 11 Unmodified _HRRKRRFRLLE_ 0 0 0 REV__ENSG00000145888|ENST00000274576|GLRA1 REV__ENSG00000145888|ENST00000274576|GLRA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.3916015625 3 522.99032 1565.94913 0.19421 0.00010157 0.2864 0.00014978 0.48061 0.00025135 522.9912517072503 136.18 0.14514 136.18 136.09 136.24 0 5 3 2 0 0 0 0.89122 1 26981 26981 0.58532 0.079364 1 1964900 + 19758 16859 12905 12909 19666 19666 0.1887930804473399 HRRLVLLKQ 9 Unmodified _HRRLVLLKQ_ 0 0 0 RSPRY1|p.A515V|1|0.37|ENSG00000159579|chr16:57235138-57235138|C/T|missense_variant RSPRY1|p.A515V|1|0.37|ENSG00000159579|chr16:57235138-57235138|C/T|missense_variant RSPRY1|p.A515V|1|0.37|ENSG00000159579|chr16:57235138-57235138|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 388.1347351074219 3 388.255891 1161.74584 NaN NaN NaN NaN NaN NaN NaN 129.62 1 129.62 129.12 130.12 0 0 0 0 0.23508 1 25609 25609 1.0715 0 1 19759 25627 12906 12910 19667 19667 0.17144190270391846 HRRQRKRS 8 Unmodified _HRRQRKRS_ 0 0 0 REV__ENST00000425046.1_1_3:4345037-4358927:+|nuORF REV__ENST00000425046.1_1_3:4345037-4358927:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21917724609375 3 375.227106 1122.65949 NaN NaN NaN NaN NaN NaN NaN 49.414 1 46.407 45.907 46.907 -3.0068 0 0 0 0.23899 1 9067 9067 1.3295 0 1 + 19760 21553 12907 12911 19668 19668 0.10306623488418154 HRRYKHFDWLY 11 Unmodified _HRRYKHFDWLY_ 0 0 0 SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant;SNX18|p.A416Pfs*42|2|0.34|ENSG00000178996|chr5:54519192-54519192|C/-|frameshift_variant;nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2622680664062 3 540.944265 1619.81096 0.27179 0.00014702 4.0297 0.0021799 4.3015 0.0023269 540.9455791578679 127.73 0.10405 123.11 123.03 123.13 -4.6172 4 2 2 0 0 0 0.96225 1 25185 25185 0.45452 0.37117 1 1516700 19761 6598 12908 12912 19669 19669 0.025851400056126295 HRSRRSLT 8 Unmodified _HRSRRSLT_ 0 0 0 tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1 tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1 tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.2324523925781 3 338.196813 1011.56861 NaN NaN NaN NaN NaN NaN NaN 104.11 1 104.11 103.61 104.61 0 0 0 0 0.21486 1 20462 20462 0.40072 0 1 19762 26160 12909 12913 19670 19670 0.06328734720284501 HRSRRSLT 8 Unmodified _HRSRRSLT_ 0 0 0 tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1 tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1 tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.1175231933594 3 338.196813 1011.56861 NaN NaN NaN NaN NaN NaN NaN 126.61 1 126.61 126.11 127.11 0 0 0 0 0.21486 1 24987 24987 0.40072 0 1 19763 26160 12909 12913 19671 19671 0.06328734720284501 HRSRRSLT 8 Unmodified _HRSRRSLT_ 0 0 0 tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1 tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1 tr|U7STL3|U7STL3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01387PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.0877380371094 3 338.196813 1011.56861 NaN NaN NaN NaN NaN NaN NaN 134.35 1 129.71 129.21 130.21 -4.6399 0 0 0 0.21486 1 26495 26495 0.40072 0 1 19764 26160 12909 12913 19672 19672 0.06328734720284501 HRSTIVDCL 9 Unmodified _HRSTIVDCL_ 0 0 0 ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1 ENST00000565642.5_1_16:71777395-71799448:-|nuORF ENST00000565642.5_1_16:71777395-71799448:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.268310546875 2 522.268758 1042.52296 NaN NaN NaN NaN NaN NaN NaN 162.89 1 157.74 157.24 158.24 -5.1438 0 0 0 0.20155 1 31666 31666 23.148 5.0134 1 19765 5743 12910 12914 19673 19673 0.003403284230216741 HRTFQIKT 8 Unmodified _HRTFQIKT_ 0 0 0 ENSG00000154493|ENST00000488181|C10orf90 ENSG00000154493|ENST00000488181|C10orf90 ENSG00000154493|ENST00000488181|C10orf90 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.1971740722656 3 344.197931 1029.57196 NaN NaN NaN NaN NaN NaN NaN 90.061 1 90.061 89.561 90.561 0 0 0 0 0.21486 1 17593 17593 1.4819 0.28856 1 19766 5015 12911 12915 19674 19674 0.05835984774262215 HRVLPFAQL 9 Unmodified _HRVLPFAQL_ 0 0 0 REV__DNAL4|p.T18A|1|0.15|ENSG00000100246|chr22:38782680-38782680|T/C|missense_variant REV__DNAL4|p.T18A|1|0.15|ENSG00000100246|chr22:38782680-38782680|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2783203125 2 540.819276 1079.624 0.14801 8.0046E-05 2.1243 0.0011489 2.2724 0.0012289 540.8222211537894 136.95 0.10745 132.02 131.95 132.05 -4.9215 4 2 2 0 0 0 0.46004 1 26323 26323 2.6312 2.3658 1 1631600 + 19767 13730 12912 12916 19675 19675 0.08737148188038191 HRVVLVSKR 9 Unmodified _HRVVLVSKR_ 0 0 0 REV__UBASH3A|p.I503Sfs*25|1|0.3|ENSG00000160185|chr21:42442466-42442466|A/-|frameshift_variant REV__UBASH3A|p.I503Sfs*25|1|0.3|ENSG00000160185|chr21:42442466-42442466|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77685546875 2 547.351274 1092.688 0.36356 0.000199 -2.5971 -0.0014215 -2.2335 -0.0012225 547.8510637628567 142.9 0.10556 138 137.95 138.06 -4.8982 4 2 2 0 0 0 0.65202 1 27576 27576 0.96228 0.88901 1 1295600 + 19768 17398 12913 12917 19676 19676 0.14535928344980675 HRWLKRCPQSM 11 Unmodified _HRWLKRCPQSM_ 0 0 0 REV__nc|ENSG00000164924|P63104-2|YWHAZ REV__nc|ENSG00000164924|P63104-2|YWHAZ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24591064453125 3 481.248302 1440.72308 NaN NaN NaN NaN NaN NaN NaN 15.994 1 14.641 14.141 15.141 -1.3534 0 0 0 0.22632 1 2243 2243 0.172 0.17062 1 + 19769 24143 12914 12918 19677 19677 0.020344798189853464 HRWTSWYLRPY 11 Unmodified _HRWTSWYLRPY_ 0 0 0 REV__ENSG00000113838|ENST00000338733|TBCCD1 REV__ENSG00000113838|ENST00000338733|TBCCD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2667236328125 3 522.265115 1563.77352 NaN NaN NaN NaN NaN NaN NaN 149.49 1 144.76 144.26 145.26 -4.7323 0 0 0 0.22632 1 29692 29692 1.4074 1.3126 1 + 19770 15354 12915 12919 19678 19678 0.014180487399926278 HRYMYIYLYLY 11 Unmodified _HRYMYIYLYLY_ 0 0 0 REV__ENST00000515408.5_1_5:112353398-112353584:+|nuORF REV__ENST00000515408.5_1_5:112353398-112353584:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2662963867188 3 533.267245 1596.77991 NaN NaN NaN NaN NaN NaN NaN 136.34 1 131.45 130.95 131.95 -4.8951 0 0 0 0.22632 1 26199 26199 0.172 0.14579 1 + 19771 22588 12916 12920 19679 19679 0.0053880585651313595 HSALSLSSI 9 Unmodified _HSALSLSSI_ 0 0 0 REV__ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant REV__ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23822021484375 2 457.750724 913.486896 NaN NaN NaN NaN NaN NaN NaN 65.175 1 61.717 61.217 62.217 -3.4581 0 0 0 0.10202 1 12192 12192 37.974 0 1 + 19772 12962 12917 12921 19680 19680 0.026691945178072274 HSCCCCCC 8 Unmodified _HSCCCCCC_ 0 0 0 REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.08599853515625 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 53.082 1 53.082 52.582 53.582 0 0 0 0 0.21486 1 10101 10101 0.69038 0.69038 1 + 19773 21813 12918 12922 19681 19681 -0.2790602160398521 HSCCCCCC 8 Unmodified _HSCCCCCC_ 0 0 0 REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.08697509765625 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 136.46 1 136.46 135.96 136.96 0 0 0 0 0.2396 1 27041 27041 0.30703 0.25724 1 + 19774 21813 12918 12922 19682 19682 -0.2790602160398521 HSCCCCCC 8 Unmodified _HSCCCCCC_ 0 0 0 REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.0931701660156 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 40.351 1 37.716 37.216 38.216 -2.6348 0 0 0 0.21486 1 7518 7518 0.69038 0.69038 1 + 19775 21813 12918 12922 19683 19683 -0.2790602160398521 HSCCCCCC 8 Unmodified _HSCCCCCC_ 0 0 0 REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.06787109375 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 56.346 1 53.452 52.952 53.952 -2.8944 0 0 0 0.21486 1 10793 10793 0.6015 0.6015 1 + 19776 21813 12918 12922 19684 19684 -0.2790602160398521 HSCCCCCC 8 Unmodified _HSCCCCCC_ 0 0 0 REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.0852966308594 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 143.94 1 139.27 138.77 139.77 -4.6694 0 0 0 0.21486 1 28484 28484 0 0 1 + 19777 21813 12918 12922 19685 19685 -0.2790602160398521 HSCCCCCC 8 Unmodified _HSCCCCCC_ 0 0 0 REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.0850524902344 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 144.79 1 140.12 139.62 140.62 -4.6694 0 0 0 0.21486 1 28683 28683 0 0 1 + 19778 21813 12918 12922 19686 19686 -0.2790602160398521 HSCCCCCC 8 Unmodified _HSCCCCCC_ 0 0 0 REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.0677490234375 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 153.45 1 148.69 148.19 149.19 -4.7684 0 0 0 0.21486 1 30497 30497 0.69038 0.69038 1 + 19779 21813 12918 12922 19687 19687 -0.2790602160398521 HSCCCCCC 8 Unmodified _HSCCCCCC_ 0 0 0 REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.09307861328125 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 31.997 1 29.971 29.471 30.471 -2.0264 0 0 0 0.21486 1 5538 5538 0.69038 0.69038 1 + 19780 21813 12918 12922 19688 19688 -0.2790602160398521 HSCCCCCC 8 Unmodified _HSCCCCCC_ 0 0 0 REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.06781005859375 2 431.085582 860.156612 NaN NaN NaN NaN NaN NaN NaN 142.83 1 137.8 137.3 138.3 -5.0261 0 0 0 0.21486 1 27536 27536 0.69038 0.69038 1 + 19781 21813 12918 12922 19689 19689 -0.2790602160398521 HSCCCCCCCSQ 11 Unmodified _HSCCCCCCCSQ_ 0 0 0 REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2490844726562 2 590.135478 1178.2564 NaN NaN NaN NaN NaN NaN NaN 65.849 1 65.849 65.349 66.349 0 0 0 0 0.23698 1 12706 12706 1.1933 1.1933 1 + 19782 21813 12919 12923 19690 19690 -0.3255957205233244 HSCSCPCH 8 Unmodified _HSCSCPCH_ 0 0 0 REV__ENST00000489483.5_1_3:48669605-48669995:-|nuORF REV__ENST00000489483.5_1_3:48669605-48669995:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2148742675781 2 437.143658 872.272763 NaN NaN NaN NaN NaN NaN NaN 17.348 1 17.348 16.848 17.848 0 0 0 0 0.21486 1 2744 2744 2.8892 0.31174 1 + 19783 22290 12920 12924 19691 19691 -0.16848295445754502 HSDDKCEPKY 10 Unmodified _HSDDKCEPKY_ 0 0 0 ENSG00000139209|ENST00000266579|SLC38A4 ENSG00000139209|ENST00000266579|SLC38A4 ENSG00000139209|ENST00000266579|SLC38A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 408.5231628417969 3 407.845005 1220.51319 0.3102 0.00012651 0.47407 0.00019335 0.78427 0.00031986 407.8451455400444 48.364 0.66857 48.364 48.068 48.736 0 55 18 4 0 0 0 0.48215 1 9182 9182 0.84494 0 1 14665000 19784 4230 12921 12925 19692 19692 -0.08824904373022946 HSDLHNLSAW 10 Unmodified _HSDLHNLSAW_ 0 0 0 REV__nc|ENSG00000119599|Q8WV16-4|DCAF4 REV__nc|ENSG00000119599|Q8WV16-4|DCAF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2610473632812 2 590.280712 1178.54687 0.083412 4.9237E-05 -1.3898 -0.00082037 -1.3064 -0.00077114 590.2801958135835 58.021 0.6176 54.815 54.511 55.128 -3.2052 41 17 3 0 0 0 0.49448 1 10870 10870 0.063865 0 1 3632500 + 19785 15585 12922 12926 19693 19693 -0.03526114818964743 HSDLKVGEY 9 Unmodified _HSDLKVGEY_ 0 0 0 DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;ENST00000529206.1_1_14:95595738-95599795:-|nuORF DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6932983398438 2 524.258914 1046.50327 -0.50779 -0.00026621 0.70206 0.00036806 0.19428 0.00010185 524.2592289962821 44.898 0.7084 42.131 41.768 42.477 -2.7661 55 19 4 0 0 0 0.10411 1 8153 8153 67.081 32.679 1 5655700 19786 835 12923 12927 19694 19694 -0.018117243160759244 HSDLKVGEY 9 Unmodified _HSDLKVGEY_ 0 0 0 DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;ENST00000529206.1_1_14:95595738-95599795:-|nuORF DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6998291015625 2 524.258914 1046.50327 -0.052095 -2.7311E-05 0.24292 0.00012735 0.19083 0.00010004 524.2589673502598 44.883 0.70191 42.135 41.779 42.481 -2.7475 59 19 4 0 0 0 0.18095 1 8108 8108 53.317 25.688 1 4860000 19787 835 12923 12927 19695 19695 -0.018117243160759244 HSDPAPLH 8 Unmodified _HSDPAPLH_ 0 0 0 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2;sp|F5HC16|UL34_HCMVMTranscriptionalregulatorUL34OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL34PE=3SV=1 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2159118652344 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 81.552 1 77.712 77.212 78.212 -3.8392 0 0 0 0.2074 1 15485 15485 19.439 4.8573 1 19788 25721 12924 12928 19696 19696 -0.027245144849530334 HSDPAPLH 8 Unmodified _HSDPAPLH_ 0 0 0 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2;sp|F5HC16|UL34_HCMVMTranscriptionalregulatorUL34OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL34PE=3SV=1 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2335205078125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 112.98 1 108.46 107.96 108.96 -4.5259 0 0 0 0.21486 1 21688 21688 5.7604 0 1 19789 25721 12924 12928 19697 19697 -0.027245144849530334 HSDPAPLH 8 Unmodified _HSDPAPLH_ 0 0 0 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2;sp|F5HC16|UL34_HCMVMTranscriptionalregulatorUL34OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL34PE=3SV=1 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2296447753906 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 113.39 1 108.86 108.36 109.36 -4.5259 0 0 0 0.21486 1 21767 21767 9.3474 0 1 19790 25721 12924 12928 19698 19698 -0.027245144849530334 HSDPAPLH 8 Unmodified _HSDPAPLH_ 0 0 0 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2;sp|F5HC16|UL34_HCMVMTranscriptionalregulatorUL34OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL34PE=3SV=1 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2159423828125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 113.24 1 108.97 108.47 109.47 -4.2725 0 0 0 0.21486 1 21807 21807 9.3474 0.75416 1 19791 25721 12924 12928 19699 19699 -0.027245144849530334 HSDPAPLH 8 Unmodified _HSDPAPLH_ 0 0 0 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2;sp|F5HC16|UL34_HCMVMTranscriptionalregulatorUL34OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL34PE=3SV=1 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2 sp|P16812|UL34_HCMVATranscriptionalregulatorUL34OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL34PE=3SV=2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2156982421875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 163.93 1 158.87 158.37 159.37 -5.0648 0 0 0 0.21486 1 31932 31932 10.183 0 1 19792 25721 12924 12928 19700 19700 -0.027245144849530334 HSDPMFSSY 9 Oxidation (M) _HSDPM(Oxidation (M))FSSY_ HSDPM(1)FSSY HSDPM(71)FSSY 0 0 1 nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78466796875 2 543.713482 1085.41241 0.011154 6.0647E-06 0.033605 1.8272E-05 0.04476 2.4336E-05 543.7133380907862 53.088 0.807 50.204 49.825 50.632 -2.8837 60 22 4 0 0 0 0.049627 1 10160 10160 71.134 47.985 1 12405000 19793 4708 12925 12929 19701 19701 73 -0.12687936355882812 HSDPMFSSY 9 Oxidation (M) _HSDPM(Oxidation (M))FSSY_ HSDPM(1)FSSY HSDPM(100)FSSY 0 0 1 nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7869262695312 2 543.713482 1085.41241 0.070672 3.8425E-05 0.10087 5.4846E-05 0.17154 9.3271E-05 543.7134851971455 53.269 0.95142 50.181 49.689 50.64 -3.0876 58 26 4 0 0 0 0.026338 1 9805 9805 100.37 70.147 1 8354500 19794 4708 12925 12929 19702 19702 73 -0.12687936355882812 HSDPMFSSY 9 Oxidation (M) _HSDPM(Oxidation (M))FSSY_ HSDPM(1)FSSY HSDPM(100)FSSY 0 0 1 nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7944946289062 2 543.713482 1085.41241 0.038711 2.1048E-05 -0.034123 -1.8553E-05 0.0045884 2.4948E-06 543.7135162533993 53.281 0.81892 50.185 49.76 50.579 -3.0954 63 23 4 0 0 0 0.026338 1 9843 9843 100.37 70.147 1 9848300 19795 4708 12925 12929 19703 19703 73 -0.12687936355882812 HSDQQVFEY 9 Unmodified _HSDQQVFEY_ 0 0 0 nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.326904296875 2 576.751453 1151.48835 0.24388 0.00014066 -0.21566 -0.00012438 0.028218 1.6275E-05 576.7512809581648 72.348 1.3975 72.348 71.844 73.241 0 122 39 6 0 0 0 1.2133E-10 1 14016 14016 152.41 106.71 1 198150000 19796 4347 12926 12930 19704 19704 -0.0813321618406917 HSDQQVFEY 9 Unmodified _HSDQQVFEY_ 0 0 0 nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3251953125 2 576.751453 1151.48835 -0.012841 -7.406E-06 -0.023056 -1.3297E-05 -0.035896 -2.0703E-05 576.751430291247 75.939 1.5059 72.524 72.12 73.626 -3.4151 141 42 6 0 0 0 1.2133E-10 1 14822 14822 152.41 106.39 1 174540000 19797 4347 12926 12930 19705 19705 -0.0813321618406917 HSDQQVFEY 9 Unmodified _HSDQQVFEY_ 0 0 0 nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3109130859375 2 576.751453 1151.48835 0.2147 0.00012383 -0.1748 -0.00010082 0.039899 2.3012E-05 576.7513096454963 76.197 1.2381 72.475 72.033 73.271 -3.7227 136 35 5 0 0 0 3.415E-06 1 14446 14446 139.14 71.058 1 152670000 19798 4347 12926 12930 19706 19706 -0.0813321618406917 HSDQQVFEY 9 Unmodified _HSDQQVFEY_ 0 0 0 nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.31298828125 2 576.751453 1151.48835 0.213 0.00012285 -0.24043 -0.00013867 -0.027431 -1.5821E-05 576.751283654291 76.082 1.4939 72.448 72.001 73.495 -3.6337 146 42 5 0 0 0 9.2522E-06 1 14478 14478 139.14 93.118 1 184670000 19799 4347 12926 12930 19707 19707 -0.0813321618406917 HSDRARHS 8 Unmodified _HSDRARHS_ 0 0 0 ENST00000299106.8_2_11:134019136-134019346:+|nuORF ENST00000299106.8_2_11:134019136-134019346:+|nuORF ENST00000299106.8_2_11:134019136-134019346:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 483.2386169433594 2 483.236639 964.458724 NaN NaN NaN NaN NaN NaN NaN 68.401 1 65.221 64.721 65.721 -3.1796 0 0 0 0.21486 1 13284 13284 8.5933 1.304 1 19800 8531 12927 12931 19708 19708 -0.02492690618908 HSDTDALGY 9 Unmodified _HSDTDALGY_ 0 0 0 ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2647399902344 2 489.711796 977.40904 0.48176 0.00023593 -0.40383 -0.00019776 0.07794 3.8168E-05 489.7115306319758 44.851 0.81109 44.851 44.459 45.27 0 62 22 4 0 0 0 0.0277 1 8446 8446 85.357 53.051 1 9690500 19801 5478 12928 12932 19709 19709 -0.08056863138244807 HSDTDALGY 9 Unmodified _HSDTDALGY_ 0 0 0 ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27313232421875 2 489.711796 977.40904 0.050286 2.4626E-05 0.052005 2.5468E-05 0.10229 5.0093E-05 489.711764323508 47.753 0.66954 44.884 44.567 45.236 -2.869 49 18 3 0 0 0 0.037229 1 9028 9028 74.423 45.936 1 13003000 19802 5478 12928 12932 19710 19710 -0.08056863138244807 HSDTDALGY 9 Unmodified _HSDTDALGY_ 0 0 0 ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2672119140625 2 489.711796 977.40904 0.11486 5.6247E-05 -0.0032154 -1.5746E-06 0.11164 5.4672E-05 489.71172036143446 47.849 0.67173 44.907 44.545 45.216 -2.9421 46 18 3 0 0 0 0.0277 1 8731 8731 97.075 61.03 1 10638000 19803 5478 12928 12932 19711 19711 -0.08056863138244807 HSDTDALGY 9 Unmodified _HSDTDALGY_ 0 0 0 ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2738037109375 2 489.711796 977.40904 -0.33353 -0.00016333 0.39025 0.00019111 0.056724 2.7779E-05 489.71193193090465 47.836 0.7606 44.887 44.535 45.295 -2.9499 50 21 3 0 0 0 0.0277 1 8745 8745 97.075 61.03 1 9223900 19804 5478 12928 12932 19712 19712 -0.08056863138244807 HSEDCDCEQC 10 Unmodified _HSEDCDCEQC_ 0 0 0 ENSG00000166930|ENST00000300190|MS4A5 ENSG00000166930|ENST00000300190|MS4A5 ENSG00000166930|ENST00000300190|MS4A5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.11614990234375 3 390.116179 1167.32671 NaN NaN NaN NaN NaN NaN NaN 170.62 1 165.75 165.25 166.25 -4.873 0 0 0 0.22588 1 33774 33774 0.15932 0.15932 1 19805 5767 12929 12933 19713 19713 -0.25026212595366815 HSEDFQRQ 8 Unmodified _HSEDFQRQ_ 0 0 0 CON__P07224 CON__P07224 CON__P07224 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6896362304688 2 523.736137 1045.45772 NaN NaN NaN NaN NaN NaN NaN 120.52 1 116 115.5 116.5 -4.5221 0 0 0 0.23025 1 23763 23763 1.7423 1.6194 1 + 19806 659 12930 12934 19714 19714 -0.06318949778460592 HSEEPCGP 8 Unmodified _HSEEPCGP_ 0 0 0 ENST00000273077.8_1_2:219210679-219210952:+|nuORF ENST00000273077.8_1_2:219210679-219210952:+|nuORF ENST00000273077.8_1_2:219210679-219210952:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 428.1671447753906 2 428.16871 854.322867 NaN NaN NaN NaN NaN NaN NaN 40.254 1 37.765 37.265 38.265 -2.4896 0 0 0 0.21486 1 7200 7200 5.7604 0.52976 1 19807 8417 12931 12935 19715 19715 -0.11012146244593168 HSEEVPLLY 9 Unmodified _HSEEVPLLY_ 0 0 0 B3GALT4|p.G242Afs*48|2|0.25|ENSG00000235863|chr6:33278139-33278139|G/-|frameshift_variant;ENSG00000235863|ENST00000451237|B3GALT4 B3GALT4|p.G242Afs*48|2|0.25|ENSG00000235863|chr6:33278139-33278139|G/-|frameshift_variant B3GALT4|p.G242Afs*48|2|0.25|ENSG00000235863|chr6:33278139-33278139|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7766723632812 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 135.23 1 135.23 134.73 135.73 0 0 0 0 0.22962 1 26784 26784 14.838 0 1 19808 287 12932 12936 19716 19716 -2.267139211653557E-05 HSEEVPLLY 9 Unmodified _HSEEVPLLY_ 0 0 0 B3GALT4|p.G242Afs*48|2|0.25|ENSG00000235863|chr6:33278139-33278139|G/-|frameshift_variant;ENSG00000235863|ENST00000451237|B3GALT4 B3GALT4|p.G242Afs*48|2|0.25|ENSG00000235863|chr6:33278139-33278139|G/-|frameshift_variant B3GALT4|p.G242Afs*48|2|0.25|ENSG00000235863|chr6:33278139-33278139|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7769775390625 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 140.3 1 135.31 134.81 135.81 -4.9877 0 0 0 0.22621 1 27003 27003 15.847 1.0089 1 19809 287 12932 12936 19717 19717 -2.267139211653557E-05 HSEIPPKP 8 Unmodified _HSEIPPKP_ 0 0 0 REV__ENSG00000158435|ENST00000289382|CNOT11 REV__ENSG00000158435|ENST00000289382|CNOT11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 302.025390625 3 302.167749 903.481417 0.29333 8.8635E-05 -0.18391 -5.5571E-05 0.10942 3.3064E-05 302.16755184256044 31.524 0.28735 29.497 29.267 29.554 -2.0264 11 7 2 0 0 0 1.0267 1 5443 5443 0.35063 0 1 607780 + 19810 17333 12933 12937 19718 19718 0.02581515726001271 HSERTSFNY 9 Unmodified _HSERTSFNY_ 0 0 0 ENST00000569118.1_1_16:69751908-69760342:-|nuORF;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1 ENST00000569118.1_1_16:69751908-69760342:-|nuORF ENST00000569118.1_1_16:69751908-69760342:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.20965576171875 3 380.840472 1139.49959 -0.43176 -0.00016443 0.59924 0.00022821 0.16748 6.3784E-05 380.8406875338018 37.094 0.73649 34.757 34.451 35.188 -2.3375 47 20 4 0 0 0 0.21577 1 6559 6559 37.771 16.234 1 5323400 19811 6707 12934 12938 19719 19719 -0.06458394089941066 HSERTSFNY 9 Unmodified _HSERTSFNY_ 0 0 0 ENST00000569118.1_1_16:69751908-69760342:-|nuORF;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1 ENST00000569118.1_1_16:69751908-69760342:-|nuORF ENST00000569118.1_1_16:69751908-69760342:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 380.840472 1139.49959 -0.1358 -5.172E-05 0.056433 2.1492E-05 -0.079371 -3.0228E-05 380.8404176470877 34.82 0.54721 34.82 34.587 35.134 0 0.019397 -0.00035699 NaN 37.771 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2608400 19812 6707 12934 12938 -0.06458394089941066 HSERTSFNY 9 Unmodified _HSERTSFNY_ 0 0 0 ENST00000569118.1_1_16:69751908-69760342:-|nuORF;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1 ENST00000569118.1_1_16:69751908-69760342:-|nuORF ENST00000569118.1_1_16:69751908-69760342:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.840472 1139.49959 -0.61348 -0.00023364 0.75491 0.0002875 0.14143 5.3861E-05 380.8407224797405 37.293 0.58552 34.824 34.465 35.05 -2.4688 0.022924 0.00044104 NaN 37.771 42 16 3 NaN NaN NaN NaN 0 NaN NaN 0 7699200 19813 6707 12934 12938 -0.06458394089941066 HSERTSFNY 9 Unmodified _HSERTSFNY_ 0 0 0 ENST00000569118.1_1_16:69751908-69760342:-|nuORF;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1 ENST00000569118.1_1_16:69751908-69760342:-|nuORF ENST00000569118.1_1_16:69751908-69760342:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.840472 1139.49959 0.098186 3.7393E-05 0.03664 1.3954E-05 0.13483 5.1347E-05 380.84044704561114 37.151 0.58109 34.803 34.482 35.063 -2.3479 0.0018347 -0.0003796 NaN 37.771 54 16 4 NaN NaN NaN NaN 0 NaN NaN 0 6598200 19814 6707 12934 12938 -0.06458394089941066 HSFMCLIKY 9 Unmodified _HSFMCLIKY_ 0 0 0 ENSG00000121594|ENST00000264246|CD80;nc|ENSG00000121594|P33681-2|CD80 ENSG00000121594|ENST00000264246|CD80 ENSG00000121594|ENST00000264246|CD80 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.20526123046875 3 381.189279 1140.54601 NaN NaN NaN NaN NaN NaN NaN 75.59 1 75.59 75.09 76.09 0 0 0 0 0.23508 1 14685 14685 4.5289 0.94181 1 19815 3185 12935 12939 19720 19720 -0.01864368783867576 HSFSRPSRL 9 Unmodified _HSFSRPSRL_ 0 0 0 REV__ENST00000572067.1_1_16:67918638-67918992:+|nuORF REV__ENST00000572067.1_1_16:67918638-67918992:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7789306640625 2 543.793789 1085.57303 NaN NaN NaN NaN NaN NaN NaN 139.96 1 139.96 139.46 140.46 0 0 0 0 0.23508 1 27840 27840 13.042 1.5478 1 + 19816 23171 12936 12940 19721 19721 0.03366199143192716 HSFTTYPKE 9 Unmodified _HSFTTYPKE_ 0 0 0 tr|U7SGK8|U7SGK8_FUSNUExonucleaseSbcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02224PE=4SV=1 tr|U7SGK8|U7SGK8_FUSNUExonucleaseSbcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02224PE=4SV=1 tr|U7SGK8|U7SGK8_FUSNUExonucleaseSbcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02224PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 370.0528564453125 3 370.513585 1108.51892 -0.18887 -6.998E-05 2.4984 0.00092569 2.3095 0.00085571 370.8480727539641 129.25 0.31126 129.25 128.99 129.3 0 10 8 2 0 0 0 0.88425 1 25524 25524 0.20686 0.20686 1 816460 19817 25902 12937 12941 19722 19722 -0.030994377990509747 HSFYVDLRS 9 Unmodified _HSFYVDLRS_ 0 0 0 REV__LIPJ|p.G278Afs*5|1|0.15|ENSG00000204022|chr10:88605667-88605667|G/-|frameshift_variant REV__LIPJ|p.G278Afs*5|1|0.15|ENSG00000204022|chr10:88605667-88605667|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2122802734375 3 375.189212 1122.54581 -0.12273 -4.6048E-05 -0.004085 -1.5326E-06 -0.12682 -4.7581E-05 375.18914528456133 29.367 3.3014 29.367 27.044 30.346 0 189 94 4 0 0 0 0.59228 1 5396 5396 13.615 6.5131 1 5724400 + 19818 19508 12938 12942 19723 19723 -0.010563291878725067 HSFYVDLRS 9 Unmodified _HSFYVDLRS_ 0 0 0 REV__LIPJ|p.G278Afs*5|1|0.15|ENSG00000204022|chr10:88605667-88605667|G/-|frameshift_variant REV__LIPJ|p.G278Afs*5|1|0.15|ENSG00000204022|chr10:88605667-88605667|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2192077636719 3 375.189212 1122.54581 0.089655 3.3638E-05 -0.15669 -5.8788E-05 -0.067033 -2.515E-05 375.1890626185454 31.691 3.6953 29.46 26.775 30.47 -2.2305 221 104 4 0 0 0 0.52027 1 5872 5872 18.373 6.1983 1 5639900 + 19819 19508 12938 12942 19724 19724 -0.010563291878725067 HSFYVDLRS 9 Unmodified _HSFYVDLRS_ 0 0 0 REV__LIPJ|p.G278Afs*5|1|0.15|ENSG00000204022|chr10:88605667-88605667|G/-|frameshift_variant REV__LIPJ|p.G278Afs*5|1|0.15|ENSG00000204022|chr10:88605667-88605667|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2073669433594 3 375.189212 1122.54581 0.30329 0.00011379 -0.46554 -0.00017467 -0.16225 -6.0875E-05 375.1889873018052 31.275 3.511 29.248 26.881 30.392 -2.0264 204 99 3 0 0 0 0.65153 1 5559 5559 9.544 2.4423 1 5877100 + 19820 19508 12938 12942 19725 19725 -0.010563291878725067 HSGDNDYDY 9 Unmodified _HSGDNDYDY_ 0 0 0 REV__ENST00000517862.1_1_8:87552529-87557099:+|nuORF REV__ENST00000517862.1_1_8:87552529-87557099:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.2107543945312 2 543.193968 1084.37338 0.12282 6.6713E-05 -1.0962 -0.00059545 -0.97338 -0.00052873 543.1909734085199 145.33 0.21103 140.26 140.11 140.32 -5.0671 6 5 2 0 0 0 0.74257 1 28072 28072 4.3292 1.0479 1 2074400 + 19821 14476 12939 12943 19726 19726 -0.16542945385890562 HSGPASAE 8 Unmodified _HSGPASAE_ 0 0 0 REV__ENST00000540643.5_2_22:32009350-32009709:+|nuORF REV__ENST00000540643.5_2_22:32009350-32009709:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.5169982910156 2 378.169567 754.324582 NaN NaN NaN NaN NaN NaN NaN 113.98 1 109.51 109.01 110.01 -4.4614 0 0 0 0.23366 1 22458 22458 0.0082765 0 1 + 19822 22859 12940 12944 19727 19727 -0.0624076916433296 HSGPPIVI 8 Unmodified _HSGPPIVI_ 0 0 0 nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 410.1134948730469 2 410.239796 818.465038 -0.22922 -9.4035E-05 0.3374 0.00013842 0.10818 4.438E-05 410.2398085674474 94.348 0.97006 94.348 93.864 94.834 0 60 27 3 0 0 0 0.99494 1 18380 18380 2.0598 0 1 4940900 19823 5792 12941 12945 19728 19728 0.04854434559899801 HSGPQYSM 8 Unmodified _HSGPQYSM_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76922607421875 2 453.692352 905.370152 -0.29957 -0.00013591 0.37376 0.00016957 0.07419 3.3659E-05 453.692485818646 34.721 0.62547 32.403 32.049 32.675 -2.3175 42 17 3 0 0 0 0.18374 1 6353 6353 74.929 34.972 1 8832700 19824 7354 12942 12946 19729 19729 -0.0863186697359879 HSGPQYSM 8 Unmodified _HSGPQYSM_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 453.692352 905.370152 0.26368 0.00011963 0.081962 3.7186E-05 0.34565 0.00015682 453.69231010723917 32.363 0.55974 32.363 32.082 32.642 0 0.016585 1.2798E-06 NaN 74.929 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 6134700 19825 7354 12942 12946 -0.0863186697359879 HSGPQYSM 8 Unmodified _HSGPQYSM_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 453.692352 905.370152 0.13636 6.1864E-05 0.029446 1.3359E-05 0.1658 7.5223E-05 453.6923050496798 34.538 0.66465 32.285 31.977 32.641 -2.2527 -0.060773 -4.6373E-05 NaN 74.929 46 18 3 NaN NaN NaN NaN 0 NaN NaN 0 9575500 19826 7354 12942 12946 -0.0863186697359879 HSHHFFFY 8 Unmodified _HSHHFFFY_ 0 0 0 REV__CPQ|p.Y427C|1|0.16|ENSG00000104324|chr8:97143044-97143044|A/G|missense_variant REV__CPQ|p.Y427C|1|0.16|ENSG00000104324|chr8:97143044-97143044|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.10345458984375 3 374.503243 1120.4879 0.46186 0.00017297 -1.6739 -0.00062689 -1.2121 -0.00045392 374.50258048369824 29.046 0.41704 27.09 26.774 27.191 -1.9561 19 11 2 0 0 0 1.0265 1 5214 5214 0.40072 0 1 488240 + 19827 13572 12943 12947 19730 19730 -0.06752546322604758 HSHHFFFY 8 Unmodified _HSHHFFFY_ 0 0 0 REV__CPQ|p.Y427C|1|0.16|ENSG00000104324|chr8:97143044-97143044|A/G|missense_variant REV__CPQ|p.Y427C|1|0.16|ENSG00000104324|chr8:97143044-97143044|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.07708740234375 3 374.503243 1120.4879 -0.294 -0.0001101 -1.0481 -0.00039251 -1.3421 -0.00050262 374.5029181811219 28.85 0.38384 26.854 26.694 27.078 -1.9962 21 10 3 0 0 0 1.0265 1 4889 4889 1.6526 0 1 421180 + 19828 13572 12943 12947 19731 19731 -0.06752546322604758 HSHKESAAI 9 Unmodified _HSHKESAAI_ 0 0 0 REV__tr|U7SS58|U7SS58_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01553PE=4SV=1 REV__tr|U7SS58|U7SS58_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01553PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2528991699219 2 490.251423 978.488293 NaN NaN NaN NaN NaN NaN NaN 173.26 1 168.38 167.88 168.88 -4.881 0 0 0 0.23508 1 34434 34434 10.074 0.72649 1 + 19829 25047 12944 12948 19732 19732 -0.0018117139344440147 HSHLFRLYLPW 11 Unmodified _HSHLFRLYLPW_ 0 0 0 REV__XAB2|p.R157H|1|0.4|ENSG00000076924|chr19:7627295-7627295|C/T|missense_variant REV__XAB2|p.R157H|1|0.4|ENSG00000076924|chr19:7627295-7627295|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2683410644531 3 490.266456 1467.77754 NaN NaN NaN NaN NaN NaN NaN 68.491 1 65.312 64.812 65.812 -3.1796 0 0 0 0.22632 1 13303 13303 1.4551 1.4546 1 + 19830 25546 12945 12949 19733 19733 0.06236138233703059 HSIGQLNYY 9 Unmodified _HSIGQLNYY_ 0 0 0 REV__ENST00000497539.5_1_2:96940752-96950410:-|nuORF REV__ENST00000497539.5_1_2:96940752-96950410:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7698974609375 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 46.939 1 43.997 43.497 44.497 -2.9421 0 0 0 0.23508 1 8542 8542 7.2892 0.56607 1 + 19831 16763 12946 12950 19734 19734 -0.023760180791896346 HSIHTLIFAI 10 Unmodified _HSIHTLIFAI_ 0 0 0 REV__ENST00000558202.1_1_15:35240356-35256599:-|nuORF REV__ENST00000558202.1_1_15:35240356-35256599:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3165893554688 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 135.64 1 131 130.5 131.5 -4.6399 0 0 0 2.8426 1 26756 26756 0.043787 0 1 + 19832 23020 12947 12951 19735 19735 0.08057997639662062 HSKFKERRKA 10 Unmodified _HSKFKERRKA_ 0 0 0 ENST00000560626.6_1_15:77406375-77406483:-|nuORF ENST00000560626.6_1_15:77406375-77406483:-|nuORF ENST00000560626.6_1_15:77406375-77406483:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.2823486328125 4 322.441461 1285.73674 -0.63184 -0.00020373 0.30947 9.9785E-05 -0.32237 -0.00010395 322.4415580704861 14.489 0.14335 13.316 13.245 13.389 -1.173 6 3 2 0 0 0 0.91149 1 1958 1958 0 0 1 361160 19833 11292 12948 12952 19736 19736 0.1052979691407927 HSKFKERRKA 10 Unmodified _HSKFKERRKA_ 0 0 0 ENST00000560626.6_1_15:77406375-77406483:-|nuORF ENST00000560626.6_1_15:77406375-77406483:-|nuORF ENST00000560626.6_1_15:77406375-77406483:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 322.441461 1285.73674 -0.59744 -0.00019264 0.22571 7.278E-05 -0.37172 -0.00011986 322.4416017931626 13.571 0.1344 13.571 13.48 13.615 0 0.15363 -0.0002865 NaN 0 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 599380 19834 11292 12948 12952 0.1052979691407927 HSKFKERRKA 10 Unmodified _HSKFKERRKA_ 0 0 0 ENST00000560626.6_1_15:77406375-77406483:-|nuORF ENST00000560626.6_1_15:77406375-77406483:-|nuORF ENST00000560626.6_1_15:77406375-77406483:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 322.441461 1285.73674 -0.93169 -0.00030041 0.79254 0.00025555 -0.13915 -4.4867E-05 322.69243255220624 14.48 0.13534 13.365 13.263 13.399 -1.1142 -0.052258 0.00044457 NaN 0 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 328810 19835 11292 12948 12952 0.1052979691407927 HSKGINYIR 9 Unmodified _HSKGINYIR_ 0 0 0 REV__CPXM2|p.G655Efs*9|1|0.31|ENSG00000121898|chr10:123754718-123754718|T/-|frameshift_variant REV__CPXM2|p.G655Efs*9|1|0.31|ENSG00000121898|chr10:123754718-123754718|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7716674804688 2 544.30399 1086.59343 0.4665 0.00025392 2.1895 0.0011918 2.656 0.0014457 544.8054067764356 153.54 0.31134 148.32 148.07 148.38 -5.2209 12 8 2 0 0 0 0.85913 1 29734 29734 10.074 4.3421 1 797150 + 19836 13575 12949 12953 19737 19737 0.053593698029771986 HSKPRMYTFIA 11 Unmodified _HSKPRMYTFIA_ 0 0 0 REV__ENSG00000177462|ENST00000641945|OR2T8 REV__ENSG00000177462|ENST00000641945|OR2T8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 451.01153564453125 3 450.904419 1349.69143 NaN NaN NaN NaN NaN NaN NaN 17.852 1 16.338 15.838 16.838 -1.5148 0 0 0 0.22632 1 2617 2617 0.172 0.17062 1 + 19837 18547 12950 12954 19738 19738 0.03056810336693161 HSKQPVYDP 9 Unmodified _HSKQPVYDP_ 0 0 0 REV__TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant REV__TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.0491638183594 3 357.513696 1069.51926 -0.64451 -0.00023042 0.66391 0.00023736 0.019395 6.9341E-06 357.51390710294106 57.075 1.1366 53.899 53.298 54.435 -3.1761 59 31 3 0 0 0 0.8799 1 10554 10554 2.4985 0 1 3195700 + 19838 18052 12951 12955 19739 19739 -0.012720180792030078 HSKRCRWKLRR 11 Unmodified _HSKRCRWKLRR_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-3|VPS13A REV__nc|ENSG00000197969|Q96RL7-3|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 509.4560241699219 3 509.296755 1524.86844 NaN NaN NaN NaN NaN NaN NaN 172.9 1 168.11 167.61 168.61 -4.7898 0 0 0 0.22632 1 35245 35245 0.50596 0.50596 1 + 19839 19379 12952 12956 19740 19740 0.12699703730163492 HSLILNNLKT 10 Unmodified _HSLILNNLKT_ 0 0 0 ENSG00000154511|ENST00000370310|DIPK1A ENSG00000154511|ENST00000370310|DIPK1A ENSG00000154511|ENST00000370310|DIPK1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3374633789062 2 576.840405 1151.66626 0.25056 0.00014453 -3.107 -0.0017922 -2.8564 -0.0016477 576.83933038015 62.294 0.52549 58.924 58.816 59.341 -3.3694 14 14 2 0 0 0 0.69696 1 11645 11645 11.495 3.3392 1 2324800 19840 5016 12953 12957 19741 19741 0.09649078805750833 HSLLKRLRK 9 Unmodified _HSLLKRLRK_ 0 0 0 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3204956054688 2 575.880199 1149.74584 NaN NaN NaN NaN NaN NaN NaN 39.014 1 36.609 36.109 37.109 -2.4049 0 0 0 0.19626 1 6955 6955 0.0033805 0.0019993 1 19841 2837 12954 12958 19742 19742 0.17696190270407897 HSLLLSCR 8 Unmodified _HSLLLSCR_ 0 0 0 ENST00000591813.5_2_19:10202011-10202836:+|nuORF;ENST00000253110.15_3_19:10202002-10202836:+|nuORF ENST00000591813.5_2_19:10202011-10202836:+|nuORF ENST00000591813.5_2_19:10202011-10202836:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1724548339844 3 310.172617 927.496021 NaN NaN NaN NaN NaN NaN NaN 65.975 1 62.692 62.192 63.192 -3.2832 0 0 0 0.21486 1 12410 12410 3.2813 1.6287 1 19842 8233 12955 12959 19743 19743 0.029372646024967253 HSPHNLIY 8 Unmodified _HSPHNLIY_ 0 0 0 TRPV5|p.R157H|1|0.24|ENSG00000127412|chr7:142929445-142929445|C/T|missense_variant TRPV5|p.R157H|1|0.24|ENSG00000127412|chr7:142929445-142929445|C/T|missense_variant TRPV5|p.R157H|1|0.24|ENSG00000127412|chr7:142929445-142929445|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2660827636719 2 490.751059 979.487565 0.47901 0.00023507 -1.2561 -0.00061641 -0.77705 -0.00038134 490.7504294868141 105.02 1.05 105.02 104.55 105.6 0 45 29 2 0 0 0 8448 1 20588 20588 6.3914 0 1 3126000 19843 26527 12956 12960 19744 19744 -0.0029996604247344294 HSPMAREI 8 Unmodified _HSPMAREI_ 0 0 0 nc|ENSG00000172830|Q8TE77-5|SSH3 nc|ENSG00000172830|Q8TE77-5|SSH3 nc|ENSG00000172830|Q8TE77-5|SSH3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1678161621094 3 314.160488 939.459635 NaN NaN NaN NaN NaN NaN NaN 115.99 1 111.63 111.13 112.13 -4.3585 0 0 0 0.21486 1 22331 22331 6.7232 3.1267 1 19844 12466 12957 12961 19745 19745 -0.012516122942315633 HSPPAEQVD 9 Unmodified _HSPPAEQVD_ 0 0 0 REV__ENSG00000254656|ENST00000649591|RTL1 REV__ENSG00000254656|ENST00000649591|RTL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25421142578125 2 490.227613 978.440674 NaN NaN NaN NaN NaN NaN NaN 82.816 1 79.117 78.617 79.617 -3.6985 0 0 0 0.21469 1 15798 15798 19.257 1.122 1 + 19845 19849 12958 12962 19746 19746 -0.04940870384291429 HSPPHMAP 8 Unmodified _HSPPHMAP_ 0 0 0 REV__ENST00000352432.8_2_3:10370089-10370329:-|nuORF REV__ENST00000352432.8_2_3:10370089-10370329:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2272644042969 2 437.20543 872.396307 NaN NaN NaN NaN NaN NaN NaN 152.48 1 152.48 151.98 152.98 0 0 0 0 0.21486 1 30540 30540 5.7604 0.52976 1 + 19846 20772 12959 12963 19747 19747 -0.04499553011464741 HSPQMSQFQS 10 Unmodified _HSPQMSQFQS_ 0 0 0 ENSG00000141867|ENST00000679869|BRD4 ENSG00000141867|ENST00000679869|BRD4 ENSG00000141867|ENST00000679869|BRD4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2615966796875 2 588.758755 1175.50296 -1.5904 -0.00093638 -0.89786 -0.00052862 -2.4883 -0.001465 588.7582610164762 15.502 1.175 14.148 13.957 15.132 -1.3534 96 33 6 0 0 0 0.63253 1 2128 2128 17.443 1.5955 1 91732000 19847 4398 12960 12964 19748 19748 -0.07777467307596453 HSQVNWQDE 9 Unmodified _HSQVNWQDE_ 0 0 0 ENST00000367607.7_2_1:179924016-179959652:+|nuORF ENST00000367607.7_2_1:179924016-179959652:+|nuORF ENST00000367607.7_2_1:179924016-179959652:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2224426269531 3 381.500227 1141.47885 0.23086 8.8073E-05 0.55058 0.00021005 0.78144 0.00029812 381.50043711716427 27.772 1.1198 26.017 25.685 26.805 -1.7552 96 31 5 0 0 0 0.8606 1 4777 4777 2.086 0 1 92109000 19848 9077 12961 12965 19749 19749 -0.08622984469616313 HSRGPGQKKEW 11 Unmodified _HSRGPGQKKEW_ 0 0 0 REV__EPS8L3|p.S264Qfs*23|1|0.39|ENSG00000198758|chr1:109757987-109757988|-/T|frameshift_variant REV__EPS8L3|p.S264Qfs*23|1|0.39|ENSG00000198758|chr1:109757987-109757988|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2285461425781 3 437.230182 1308.66872 NaN NaN NaN NaN NaN NaN NaN 28.336 1 26.581 26.081 27.081 -1.7552 0 0 0 0.22632 1 4779 4779 3.0723 0 1 + 19849 23499 12962 12966 19750 19750 0.026729272634156587 HSSCSDTFY 9 Unmodified _HSSCSDTFY_ 0 0 0 REV__IDI2|p.W196Gfs*2|1|0.28|ENSG00000148377|chr10:1019616-1019616|G/-|frameshift_variant REV__IDI2|p.W196Gfs*2|1|0.28|ENSG00000148377|chr10:1019616-1019616|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7014770507812 2 523.697832 1045.38111 NaN NaN NaN NaN NaN NaN NaN 68.29 1 68.29 67.79 68.79 0 0 0 0 0.23508 1 13202 13202 11.64 2.2929 1 + 19850 16972 12963 12967 19751 19751 -0.13976509389976854 HSSDLQGNYIQ 11 Unmodified _HSSDLQGNYIQ_ 0 0 0 ENST00000414049.1_1_13:90014155-90014710:-|nuORF;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;SP3|p.G708Vfs*20|1|0.27|ENSG00000172845|chr2:173910166-173910166|T/-|frameshift_variant;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3 ENST00000414049.1_1_13:90014155-90014710:-|nuORF ENST00000414049.1_1_13:90014155-90014710:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7708129882812 2 631.294016 1260.57348 0.50375 0.00031801 -0.44461 -0.00028068 0.059142 3.7336E-05 631.2938864017754 66.552 0.86423 63.055 62.558 63.423 -3.4965 35 24 2 0 0 0 0.92792 1 12424 12424 5.2969 1.7004 1 1882100 19851 6247 12964 12968 19752 19752 -0.04638470718282406 HSSDLQGNYIQ 11 Unmodified _HSSDLQGNYIQ_ 0 0 0 ENST00000414049.1_1_13:90014155-90014710:-|nuORF;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;SP3|p.G708Vfs*20|1|0.27|ENSG00000172845|chr2:173910166-173910166|T/-|frameshift_variant;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3 ENST00000414049.1_1_13:90014155-90014710:-|nuORF ENST00000414049.1_1_13:90014155-90014710:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 631.294016 1260.57348 0.55089 0.00034778 -0.40379 -0.00025491 0.1471 9.2865E-05 631.2937303698818 66.309 0.87576 63.014 62.464 63.34 -3.2953 -0.0026766 8.2511E-06 NaN 5.2969 43 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1646000 19852 6247 12964 12968 -0.04638470718282406 HSSHVASLEK 10 Unmodified _HSSHVASLEK_ 0 0 0 REV__DDIAS|p.L534Yfs*16|2|0.29|ENSG00000165490|chr11:82932934-82932934|T/-|frameshift_variant REV__DDIAS|p.L534Yfs*16|2|0.29|ENSG00000165490|chr11:82932934-82932934|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7835083007812 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 151.43 1 151.43 150.93 151.93 0 0 0 0 2.8426 1 30326 30326 0.84494 0 1 + 19853 13652 12965 12969 19753 19753 0.008587693238041538 HSSLVKPPP 9 Unmodified _HSSLVKPPP_ 0 0 0 REV__ENST00000336967.7_1_19:54378000-54378504:+|nuORF REV__ENST00000336967.7_1_19:54378000-54378504:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7784423828125 2 481.276909 960.539266 0.12047 5.7979E-05 0.047624 2.292E-05 0.16809 8.0899E-05 481.27687248266113 60.892 2.1052 57.523 56.391 58.497 -3.3694 85 59 2 0 0 0 0.6329 1 11208 11208 10.824 2.9138 1 1455300 + 19854 20671 12966 12970 19754 19754 0.05741777651417124 HSSSSGGG 8 Unmodified _HSSSSGGG_ 0 0 0 REV__nc|ENSG00000079102|Q06455-6|RUNX1T1 REV__nc|ENSG00000079102|Q06455-6|RUNX1T1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.1380615234375 2 338.138267 674.261981 NaN NaN NaN NaN NaN NaN NaN 67.706 1 64.21 63.71 64.71 -3.4965 0 0 0 0.2396 1 12708 12708 0 0 1 + 19855 14390 12967 12971 19755 19755 -0.08817915232498308 HSSVPPPKL 9 Unmodified _HSSVPPPKL_ 0 0 0 ENST00000548943.1_1_12:106565027-106566212:+|nuORF ENST00000548943.1_1_12:106565027-106566212:+|nuORF ENST00000548943.1_1_12:106565027-106566212:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7784423828125 2 481.276909 960.539266 -0.24277 -0.00011684 0.50743 0.00024421 0.26466 0.00012737 481.277128205733 57.277 1.9408 57.277 56.536 58.477 0 96 55 2 0 0 0 0.62102 1 10842 10842 11.64 0.81637 1 1919100 19856 11155 12968 12972 19756 19756 0.05741777651417124 HSSVPRGHGL 10 Unmodified _HSSVPRGHGL_ 0 0 0 REV__ENST00000416281.6_1_11:67048455-67049666:+|nuORF REV__ENST00000416281.6_1_11:67048455-67049666:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.697509765625 2 523.778139 1045.54173 -0.1915 -0.0001003 -1.3534 -0.00070888 -1.5449 -0.00080918 523.7779440268212 69.134 0.33264 65.598 65.466 65.799 -3.5362 10 8 2 0 0 0 0.82094 1 12984 12984 10.824 2.2306 1 761590 + 19857 21465 12969 12973 19757 19757 0.020776261090986736 HSTLHSVF 8 Unmodified _HSTLHSVF_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 464.1436462402344 2 464.237784 926.461016 NaN NaN NaN NaN NaN NaN NaN 54.761 1 51.878 51.378 52.378 -2.8837 0 0 0 0.20896 1 10461 10461 18.135 0 1 19858 7561 12970 12974 19758 19758 -0.00515654933803944 HSTLSSPPT 9 Unmodified _HSTLSSPPT_ 0 0 0 ENST00000394767.2_1_4:105415911-105416040:-|nuORF ENST00000394767.2_1_4:105415911-105416040:-|nuORF ENST00000394767.2_1_4:105415911-105416040:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 464.12518310546875 2 463.732532 925.45051 0.1812 8.4028E-05 0.99494 0.00046139 1.1761 0.00054541 463.7323596314362 53.161 1.0285 53.161 52.466 53.495 0 52 28 2 0 0 0 0.79204 1 10012 10012 11.64 2.2929 1 7506800 19859 9417 12971 12975 19759 19759 -0.015196823788983238 HSTTLSVEAV 10 Unmodified _HSTTLSVEAV_ 0 0 0 REV__ENST00000521704.1_1_8:124792721-124796858:+|nuORF REV__ENST00000521704.1_1_8:124792721-124796858:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2695922851562 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 95.476 1 91.426 90.926 91.926 -4.0496 0 0 0 2.8426 1 18715 18715 0.063865 0 1 + 19860 22653 12972 12976 19760 19760 0.009925448553985916 HSTVAPCP 8 Unmodified _HSTVAPCP_ 0 0 0 REV__ENST00000589894.1_1_19:11280623-11280797:-|nuORF REV__ENST00000589894.1_1_19:11280623-11280797:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.8714599609375 2 406.191988 810.369423 NaN NaN NaN NaN NaN NaN NaN 22.904 1 22.904 22.404 23.404 0 0 0 0 0.22692 1 3888 3888 0.68139 0 1 + 19861 23315 12973 12977 19761 19761 -0.043346616226585866 HSTVHLIEF 9 Unmodified _HSTVHLIEF_ 0 0 0 PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2 PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2716674804688 2 541.785099 1081.55564 0.32778 0.00017759 -0.28299 -0.00015332 0.044786 2.4264E-05 541.7848503628719 111.37 0.79878 111.37 110.93 111.73 0 59 22 4 0 0 0 0.035225 1 21894 21894 88.904 46.809 1 8912900 19862 4720 12974 12978 19762 19762 0.01812858817538654 HSTVHLIEF 9 Unmodified _HSTVHLIEF_ 0 0 0 PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2 PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2581787109375 2 541.785099 1081.55564 0.24917 0.000135 0.082949 4.494E-05 0.33212 0.00017994 541.7850967728978 115.14 0.71223 110.58 110.26 110.97 -4.555 40 19 3 0 0 0 0.62921 1 22131 22131 30.637 23.347 1 3051400 19863 4720 12974 12978 19763 19763 0.01812858817538654 HSTVHLIEF 9 Unmodified _HSTVHLIEF_ 0 0 0 PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant;ENSG00000147872|ENST00000276914|PLIN2 PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant PLIN2|p.V348*|1|0.15|ENSG00000147872|chr9:19116520-19116520|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.259521484375 2 541.785099 1081.55564 0.61266 0.00033193 -0.55161 -0.00029885 0.061056 3.3079E-05 541.7847162808856 114.98 0.84595 110.67 110.27 111.12 -4.3135 45 23 3 0 0 0 0.73268 1 22106 22106 13.042 6.3193 1 2809600 19864 4720 12974 12978 19764 19764 0.01812858817538654 HSVCSTSSL 9 Unmodified _HSVCSTSSL_ 0 0 0 MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2475891113281 2 460.710742 919.406931 -0.22642 -0.00010432 0.50089 0.00023077 0.27447 0.00012645 460.7109627066666 42.324 0.91431 39.605 39.177 40.092 -2.7191 44 25 3 0 0 0 0.65155 1 8009 8009 28.487 9.0478 1 5701600 19865 4060 12975 12979 19765 19765 -0.05599615147673376 HSVFACPI 8 Unmodified _HSVFACPI_ 0 0 0 nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B;ENST00000507937.1_1_5:177574516-177575030:+|nuORF nc|ENSG00000145916|Q96G75-2|RMND5B nc|ENSG00000145916|Q96G75-2|RMND5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2164306640625 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 172.43 1 172.43 171.93 172.93 0 0 0 0 0.21486 1 35596 35596 5.2307 2.3415 1 19866 4629 12976 12980 19766 19766 -0.019854982088986617 HSVLVMGY 8 Unmodified _HSVLVMGY_ 0 0 0 ENSG00000159618|ENST00000349457|ADGRG5;ENST00000569839.1_1_16:57608733-57625590:+|nuORF ENSG00000159618|ENST00000349457|ADGRG5 ENSG00000159618|ENST00000349457|ADGRG5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75689697265625 2 453.231113 904.447674 0.020138 9.1271E-06 0.35815 0.00016232 0.37829 0.00017145 453.23124366136335 77.651 0.8037 73.993 73.642 74.446 -3.6588 33 22 2 0 0 0 8448 1 14766 14766 6.2058 0 1 939940 19867 5213 12977 12981 19767 19767 -0.008372290374040858 HSVRIRRQFRN 11 Unmodified _HSVRIRRQFRN_ 0 0 0 nc|ENSG00000179915|Q9ULB1|NRXN1;NRXN1|p.I561Yfs*12|1|0.02|ENSG00000179915|chr2:50552666-50552667|-/T|frameshift_variant;NRXN1|p.S590Yfs*14|1|0.43|ENSG00000179915|chr2:50538627-50538628|-/T|frameshift_variant;NRXN1|p.S820Vfs*2|1|0.13|ENSG00000179915|chr2:50506534-50506534|T/-|frameshift_variant;NRXN1|p.Q932Pfs*14|1|0.32|ENSG00000179915|chr2:50497419-50497420|-/A|frameshift_variant;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2677917480469 3 490.283392 1467.82835 NaN NaN NaN NaN NaN NaN NaN 68.248 1 65.107 64.607 65.607 -3.1406 0 0 0 0.22632 1 13251 13251 3.0723 3.0461 1 19868 12491 12978 12982 19768 19768 0.11314480331247978 HSYHSWPRSW 10 Unmodified _HSYHSWPRSW_ 0 0 0 ENST00000469182.1_1_6:31610750-31613330:-|nuORF ENST00000469182.1_1_6:31610750-31613330:-|nuORF ENST00000469182.1_1_6:31610750-31613330:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 448.3511657714844 3 448.207377 1341.6003 0.27807 0.00012463 -1.2729 -0.00057053 -0.99486 -0.0004459 448.20679437823225 120.49 0.70595 116.02 115.71 116.42 -4.467 33 19 3 0 0 0 0.76269 1 23273 23273 1.7423 0.52744 1 1766800 19869 10177 12979 12983 19769 19769 -0.05683317316447756 HSYHSWPRSW 10 Unmodified _HSYHSWPRSW_ 0 0 0 ENST00000469182.1_1_6:31610750-31613330:-|nuORF ENST00000469182.1_1_6:31610750-31613330:-|nuORF ENST00000469182.1_1_6:31610750-31613330:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 448.207377 1341.6003 0.21057 9.438E-05 -1.3489 -0.00060457 -1.1383 -0.00051019 448.20693164683473 116.1 0.38366 116.1 115.84 116.22 0 0.0020004 -0.00023991 NaN 1.7423 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1634300 19870 10177 12979 12983 -0.05683317316447756 HSYHSWPRSW 10 Unmodified _HSYHSWPRSW_ 0 0 0 ENST00000469182.1_1_6:31610750-31613330:-|nuORF ENST00000469182.1_1_6:31610750-31613330:-|nuORF ENST00000469182.1_1_6:31610750-31613330:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 448.207377 1341.6003 0.14767 6.6187E-05 -1.0152 -0.00045502 -0.86754 -0.00038884 448.20681868324596 120.69 0.52432 116.17 115.78 116.31 -4.5221 0.071731 0.00020871 NaN 1.7423 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1906400 19871 10177 12979 12983 -0.05683317316447756 HSYHWMSFLW 10 Unmodified _HSYHWMSFLW_ 0 0 0 REV__ENSG00000084073|ENST00000372759|ZMPSTE24 REV__ENSG00000084073|ENST00000372759|ZMPSTE24 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2491760253906 3 465.209731 1392.60736 NaN NaN NaN NaN NaN NaN NaN 49.581 1 49.581 49.081 50.081 0 0 0 0 2.8426 1 9375 9375 0.063865 0.020077 1 + 19872 14461 12980 12984 19770 19770 -0.07323720760223296 HSYSHLNWKRR 11 Unmodified _HSYSHLNWKRR_ 0 0 0 ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3 ENSG00000182938|ENST00000328801|OTOP3 ENSG00000182938|ENST00000328801|OTOP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3869018554688 2 742.386908 1482.75926 NaN NaN NaN NaN NaN NaN NaN 151.61 1 146.38 145.88 146.88 -5.2365 0 0 0 0.22632 1 29390 29390 0.50596 0.46217 1 19873 6820 12981 12985 19771 19771 0.03719396311657874 HTADVHGL 8 Unmodified _HTADVHGL_ 0 0 0 ENST00000476493.5_1_1:33099602-33116090:-|nuORF ENST00000476493.5_1_1:33099602-33116090:-|nuORF ENST00000476493.5_1_1:33099602-33116090:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.244140625 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 117.27 1 112.92 112.42 113.42 -4.3585 0 0 0 0.21486 1 22573 22573 9.3474 0 1 19874 10290 12982 12986 19772 19772 -0.01620514484955038 HTDKVLHL 8 Unmodified _HTDKVLHL_ 0 0 0 FBXW5|p.Q94K|1|0.22|ENSG00000159069|chr9:136943420-136943420|G/T|missense_variant FBXW5|p.Q94K|1|0.22|ENSG00000159069|chr9:136943420-136943420|G/T|missense_variant FBXW5|p.Q94K|1|0.22|ENSG00000159069|chr9:136943420-136943420|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.775146484375 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 145.9 1 140.9 140.4 141.4 -5 0 0 0 0.22934 1 28224 28224 0.62683 0 1 19875 11807 12983 12987 19773 19773 0.05220893508669633 HTDKVLHL 8 Unmodified _HTDKVLHL_ 0 0 0 FBXW5|p.Q94K|1|0.22|ENSG00000159069|chr9:136943420-136943420|G/T|missense_variant FBXW5|p.Q94K|1|0.22|ENSG00000159069|chr9:136943420-136943420|G/T|missense_variant FBXW5|p.Q94K|1|0.22|ENSG00000159069|chr9:136943420-136943420|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77471923828125 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 151.5 1 146.33 145.83 146.83 -5.1759 0 0 0 0.21323 1 29364 29364 14.582 2.9414 1 19876 11807 12983 12987 19774 19774 0.05220893508669633 HTDLAIEY 8 Unmodified _HTDLAIEY_ 0 0 0 ENST00000448052.1_1_1:84551619-84551913:+|nuORF;ENSG00000100348|ENST00000216185|TXN2 ENST00000448052.1_1_1:84551619-84551913:+|nuORF ENST00000448052.1_1_1:84551619-84551913:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.237060546875 2 481.234907 960.455261 -0.062286 -2.9974E-05 0.24179 0.00011636 0.1795 8.6384E-05 481.23491087294354 86.419 0.55936 86.419 86.212 86.771 0 21 15 2 0 0 0 0.16192 3 16895 16847;16895;16897 50.855 9.0478 1 1160800 19877 1960 12984 12988 19775;19776;19777 19776 -0.02654798236142142 HTDLAIEY 8 Unmodified _HTDLAIEY_ 0 0 0 ENST00000448052.1_1_1:84551619-84551913:+|nuORF;ENSG00000100348|ENST00000216185|TXN2 ENST00000448052.1_1_1:84551619-84551913:+|nuORF ENST00000448052.1_1_1:84551619-84551913:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2545166015625 2 481.234907 960.455261 -0.028531 -1.373E-05 0.35018 0.00016852 0.32165 0.00015479 481.2352312777711 90.27 0.56998 86.41 86.08 86.65 -3.8595 23 15 2 0 0 0 0.16192 3 17644 17633;17644;17691 50.855 9.0478 1 1492700 19878 1960 12984 12988 19778;19779;19780 19779 -0.02654798236142142 HTDLAIEY 8 Unmodified _HTDLAIEY_ 0 0 0 ENST00000448052.1_1_1:84551619-84551913:+|nuORF;ENSG00000100348|ENST00000216185|TXN2 ENST00000448052.1_1_1:84551619-84551913:+|nuORF ENST00000448052.1_1_1:84551619-84551913:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2353515625 2 481.234907 960.455261 0.37983 0.00018279 1.2864 0.00061908 1.6663 0.00080186 481.2356323062461 90.475 0.56114 86.431 86.128 86.689 -4.0443 23 15 2 0 0 0 0.11385 3 17226 17203;17226;17273 60.39 3.9272 1 1429500 19879 1960 12984 12988 19781;19782;19783 19782 -0.02654798236142142 HTDLAIEY 8 Unmodified _HTDLAIEY_ 0 0 0 ENST00000448052.1_1_1:84551619-84551913:+|nuORF;ENSG00000100348|ENST00000216185|TXN2 ENST00000448052.1_1_1:84551619-84551913:+|nuORF ENST00000448052.1_1_1:84551619-84551913:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2354431152344 2 481.234907 960.455261 0.10439 5.0237E-05 0.7939 0.00038205 0.89829 0.00043229 481.2352922821062 90.193 0.66703 86.415 86.044 86.711 -3.7779 24 18 2 0 0 0 0.14825 1 17263 17263 53.576 13.127 1 972440 19880 1960 12984 12988 19784 19784 -0.02654798236142142 HTDVGLLEY 9 Unmodified _HTDVGLLEY_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant;ENST00000542565.1_1_12:124970985-124979836:-|nuORF;NCOR2|p.S152Afs*21|1|0.21|ENSG00000196498|chr12:124473090-124473090|G/-|frameshift_variant;NCOR2|p.Q251Rfs*22|1|0.24|ENSG00000196498|chr12:124457117-124457117|G/-|frameshift_variant nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6946411132812 2 523.761289 1045.50803 -0.25144 -0.0001317 0.26703 0.00013986 0.01559 8.1656E-06 523.7614172028495 114.21 1.6456 109.74 109.16 110.81 -4.4726 154 46 5 0 0 0 0.13686 1 22625 22625 61.357 32.871 1 240040000 19881 7273 12985 12989 19785 19785 -0.012908401733284336 HTDVGLLEY 9 Unmodified _HTDVGLLEY_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant;ENST00000542565.1_1_12:124970985-124979836:-|nuORF;NCOR2|p.S152Afs*21|1|0.21|ENSG00000196498|chr12:124473090-124473090|G/-|frameshift_variant;NCOR2|p.Q251Rfs*22|1|0.24|ENSG00000196498|chr12:124457117-124457117|G/-|frameshift_variant nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.690673828125 2 523.761289 1045.50803 -0.39566 -0.00020723 0.3916 0.00020511 -0.0040594 -2.1262E-06 523.7615001241785 114.32 1.6237 109.77 109.21 110.83 -4.555 167 45 5 0 0 0 0.0059038 1 21898 21898 112.59 38.17 1 217830000 19882 7273 12985 12989 19786 19786 -0.012908401733284336 HTEAEKLK 8 Unmodified _HTEAEKLK_ 0 0 0 REV__TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant REV__TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.2639465332031 2 478.263999 954.513445 NaN NaN NaN NaN NaN NaN NaN 156.53 1 151.25 150.75 151.75 -5.2854 0 0 0 0.22757 1 30367 30367 6.1918 0 1 + 19883 24837 12986 12990 19787 19787 0.034368834091424105 HTEGPVLP 8 Unmodified _HTEGPVLP_ 0 0 0 REV__ENST00000505904.1_1_3:42700310-42703020:+|nuORF REV__ENST00000505904.1_1_3:42700310-42703020:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24468994140625 2 425.226885 848.439217 NaN NaN NaN NaN NaN NaN NaN 90.904 1 87.044 86.544 87.544 -3.8595 0 0 0 0.23749 1 17790 17790 0.0082765 0 1 + 19884 22482 12987 12991 19788 19788 0.0089354031762241 HTELGPNKAE 10 Unmodified _HTELGPNKAE_ 0 0 0 REV__nc|ENSG00000137074|Q7Z2E3-13|APTX REV__nc|ENSG00000137074|Q7Z2E3-13|APTX MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7703247070312 2 548.275095 1094.53564 0.26117 0.00014319 -0.2436 -0.00013356 0.017573 9.635E-06 548.2749376043297 17.499 0.81495 17.499 17.172 17.987 0 64 22 5 0 0 0 0.87565 1 2733 2733 15.248 2.206 1 35563000 + 19885 13089 12988 12992 19789 19789 -0.00784936913078127 HTELLDLQP 9 Unmodified _HTELLDLQP_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2647094726562 2 533.282389 1064.55022 0.055047 2.9355E-05 -0.38666 -0.0002062 -0.33161 -0.00017684 533.2821746204484 97.397 2.6122 93.477 92.023 94.636 -3.9194 213 75 4 0 0 0 0.36931 1 18867 18867 27.629 5.8822 1 79282000 19886 2678 12989 12993 19790 19790 0.020531352350417365 HTETKTITY 9 Unmodified _HTETKTITY_ 0 0 0 EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant;ENST00000462032.1_1_1:29424324-29436027:+|nuORF;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;EPB41|p.K805Rfs*3|1|0.19|ENSG00000159023|chr1:29109433-29109433|C/-|frameshift_variant;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3 EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7799682617188 2 547.279846 1092.54514 0.3844 0.00021037 -0.79967 -0.00043764 -0.41528 -0.00022727 547.2794576188633 27.256 0.33829 27.256 27.115 27.454 0 20 9 3 0 0 0 0.13932 1 4803 4803 45.7 9.5726 1 778990 19887 1638 12990 12994 19791 19791 0.002568313724395921 HTETKTITY 9 Unmodified _HTETKTITY_ 0 0 0 EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant;ENST00000462032.1_1_1:29424324-29436027:+|nuORF;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;EPB41|p.K805Rfs*3|1|0.19|ENSG00000159023|chr1:29109433-29109433|C/-|frameshift_variant;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3 EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7681274414062 2 547.279846 1092.54514 0.87136 0.00047688 -1.0981 -0.00060099 -0.22678 -0.00012411 547.2795024345468 29.078 0.45982 27.122 26.878 27.338 -1.9561 24 12 3 0 0 0 0.10699 2 5237 5198;5237 53.404 11.564 1 1026400 19888 1638 12990 12994 19792;19793 19793 0.002568313724395921 HTETKTITY 9 Unmodified _HTETKTITY_ 0 0 0 EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant;ENST00000462032.1_1_1:29424324-29436027:+|nuORF;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;EPB41|p.K805Rfs*3|1|0.19|ENSG00000159023|chr1:29109433-29109433|C/-|frameshift_variant;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3 EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7823486328125 2 547.279846 1092.54514 0.33222 0.00018182 -0.55252 -0.00030238 -0.2203 -0.00012056 547.2794653226496 28.95 0.41841 27.195 26.946 27.364 -1.7552 18 11 2 0 0 0 0.35556 1 4890 4890 12.241 2.1667 1 812670 19889 1638 12990 12994 19794 19794 0.002568313724395921 HTETKTITY 9 Unmodified _HTETKTITY_ 0 0 0 EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant;ENST00000462032.1_1_1:29424324-29436027:+|nuORF;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;EPB41|p.K805Rfs*3|1|0.19|ENSG00000159023|chr1:29109433-29109433|C/-|frameshift_variant;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3 EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.780517578125 2 547.279846 1092.54514 0.49252 0.00026955 -1.1135 -0.0006094 -0.62099 -0.00033986 547.2795724746826 29.06 0.49012 27.064 26.829 27.319 -1.9962 27 13 3 0 0 0 0.10699 1 4943 4943 53.404 9.5457 1 655030 19890 1638 12990 12994 19795 19795 0.002568313724395921 HTEVYDHLF 9 Unmodified _HTEVYDHLF_ 0 0 0 REV__sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2 REV__sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7257995605469 3 387.517218 1159.52982 0.058851 2.2806E-05 -0.06886 -2.6684E-05 -0.010008 -3.8784E-06 387.5171213241916 51.133 1.0346 51.133 50.13 51.165 0 37 29 2 0 0 0 0.8799 1 9528 9528 0.20686 0 1 2252400 + 19891 24696 12991 12995 19796 19796 -0.043560354247802024 HTFGKNGLEF 10 Unmodified _HTFGKNGLEF_ 0 0 0 RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT;ENST00000490291.1_1_2:85578731-85581633:-|nuORF RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33349609375 2 575.288005 1148.56146 0.28392 0.00016334 -0.69929 -0.00040229 -0.41537 -0.00023896 575.2876349529635 34.215 0.86238 32.068 31.532 32.394 -2.1468 68 24 5 0 0 0 0.53552 1 6026 6026 22.736 2.2827 1 46003000 19892 1202 12992 12996 19797 19797 -0.006880426707994047 HTFRLRTPD 9 Unmodified _HTFRLRTPD_ 0 0 0 nc|ENSG00000092295|P22735-2|TGM1;ENSG00000092295|ENST00000206765|TGM1 nc|ENSG00000092295|P22735-2|TGM1 nc|ENSG00000092295|P22735-2|TGM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2070617675781 3 381.540357 1141.59924 -0.29823 -0.00011379 0.25807 9.8462E-05 -0.040165 -1.5324E-05 381.5404287579613 19.653 0.34213 18.328 18.181 18.523 -1.3251 29 9 4 0 0 0 0.8799 1 2982 2982 0.20686 0.20686 1 9430600 19893 1832 12993 12997 19798 19798 0.03410468314677928 HTGEAELL 8 Unmodified _HTGEAELL_ 0 0 0 REV__ENST00000496259.5_1_7:149430418-149430691:+|nuORF REV__ENST00000496259.5_1_7:149430418-149430691:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.9190673828125 2 435.2218 868.429047 0.22923 9.9766E-05 -0.33313 -0.00014499 -0.1039 -4.5219E-05 435.22165820968416 31.141 0.80812 29.024 28.573 29.381 -2.1167 40 22 3 0 0 0 0.96284 1 5712 5712 8.5933 6.2905 1 3997700 + 19894 22387 12994 12998 19799 19799 -0.010430674076019386 HTGEAELL 8 Unmodified _HTGEAELL_ 0 0 0 REV__ENST00000496259.5_1_7:149430418-149430691:+|nuORF REV__ENST00000496259.5_1_7:149430418-149430691:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 435.2218 868.429047 0.31977 0.00013917 -0.78356 -0.00034102 -0.46379 -0.00020185 435.22162131521804 31.133 0.62921 28.984 28.636 29.265 -2.1483 -0.019802 -0.00031217 NaN 8.5933 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2432200 + 19895 22387 12994 12998 -0.010430674076019386 HTGENLTNVRY 11 Unmodified _HTGENLTNVRY_ 0 0 0 ZNF234|p.K650Nfs*19|1|0.16|ENSG00000263002|chr19:44157962-44157962|A/-|frameshift_variant ZNF234|p.K650Nfs*19|1|0.16|ENSG00000263002|chr19:44157962-44157962|A/-|frameshift_variant ZNF234|p.K650Nfs*19|1|0.16|ENSG00000263002|chr19:44157962-44157962|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.9190673828125 3 435.217831 1302.63166 0.16569 7.2112E-05 -0.16777 -7.3016E-05 -0.0020775 -9.0416E-07 435.21778181189836 31.533 0.59711 29.303 28.92 29.517 -2.2305 44 16 4 0 0 0 0.95898 1 5712 5712 4.4062 3.9979 1 7275100 19896 26607 12995 12999 19800 19800 -0.007547890730165818 HTGENLTNVRY 11 Unmodified _HTGENLTNVRY_ 0 0 0 ZNF234|p.K650Nfs*19|1|0.16|ENSG00000263002|chr19:44157962-44157962|A/-|frameshift_variant ZNF234|p.K650Nfs*19|1|0.16|ENSG00000263002|chr19:44157962-44157962|A/-|frameshift_variant ZNF234|p.K650Nfs*19|1|0.16|ENSG00000263002|chr19:44157962-44157962|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 435.217831 1302.63166 0.1937 8.43E-05 2.7489 0.0011964 2.9426 0.0012807 435.2202581019824 29.167 0.76362 29.167 28.67 29.434 0 -0.083525 0.0037843 NaN 4.4062 45 21 4 NaN NaN NaN NaN 0 NaN NaN 0 4322900 19897 26607 12995 12999 -0.007547890730165818 HTGENLTNVRY 11 Unmodified _HTGENLTNVRY_ 0 0 0 ZNF234|p.K650Nfs*19|1|0.16|ENSG00000263002|chr19:44157962-44157962|A/-|frameshift_variant ZNF234|p.K650Nfs*19|1|0.16|ENSG00000263002|chr19:44157962-44157962|A/-|frameshift_variant ZNF234|p.K650Nfs*19|1|0.16|ENSG00000263002|chr19:44157962-44157962|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 435.217831 1302.63166 0.3045 0.00013252 -0.23621 -0.0001028 0.068294 2.9723E-05 435.2177869609546 31.431 0.94499 29.282 28.987 29.932 -2.1483 0.031528 -0.00011323 NaN 4.4062 54 26 4 NaN NaN NaN NaN 0 NaN NaN 0 5836000 19898 26607 12995 12999 -0.007547890730165818 HTIIHRRIRKL 11 Unmodified _HTIIHRRIRKL_ 0 0 0 REV__ZNF136|p.T275Rfs*112|1|0.08|ENSG00000196646|chr19:12187199-12187200|-/TAGGGTTT|frameshift_variant REV__ZNF136|p.T275Rfs*112|1|0.08|ENSG00000196646|chr19:12187199-12187200|-/TAGGGTTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2543029785156 3 481.644149 1441.91062 NaN NaN NaN NaN NaN NaN NaN 106.31 1 101.93 101.43 102.43 -4.3764 0 0 0 0.23698 1 20389 20389 2.6312 1.3016 1 + 19899 19268 12996 13000 19801 19801 0.20734002410199537 HTKDKKKNPWY 11 Unmodified _HTKDKKKNPWY_ 0 0 0 REV__RELN|p.H3353Tfs*46|1|0.25|ENSG00000189056|chr7:103483777-103483777|G/-|frameshift_variant REV__RELN|p.H3353Tfs*46|1|0.25|ENSG00000189056|chr7:103483777-103483777|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7777099609375 3 482.261371 1443.76228 NaN NaN NaN NaN NaN NaN NaN 116.83 1 112.47 111.97 112.97 -4.3585 0 0 0 0.22632 1 22491 22491 0.00056442 0 1 + 19900 19188 12997 13001 19802 19802 0.05815226645859184 HTKGEHWRK 9 Unmodified _HTKGEHWRK_ 0 0 0 HNRNPDL|p.G410Vfs*25|1|0.24|ENSG00000152795|chr4:82426093-82426093|C/-|frameshift_variant HNRNPDL|p.G410Vfs*25|1|0.24|ENSG00000152795|chr4:82426093-82426093|C/-|frameshift_variant HNRNPDL|p.G410Vfs*25|1|0.24|ENSG00000152795|chr4:82426093-82426093|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 394.8796081542969 3 393.544101 1177.61047 -0.66356 -0.00026114 -0.69188 -0.00027229 -1.3554 -0.00053343 393.5437712126277 50.32 1.1589 47.313 46.599 47.758 -3.0068 90 33 5 0 0 0 0.52151 1 9283 9283 2.6312 2.558 1 11654000 19901 11910 12998 13002 19803 19803 0.028772904087645657 HTKLKSKS 8 Unmodified _HTKLKSKS_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2302551269531 3 310.190665 927.550165 -0.4508 -0.00013983 0.47874 0.0001485 0.027943 8.6677E-06 310.19076683408156 24.059 0.3347 24.059 23.899 24.234 0 15 9 2 0 0 0 0.83982 1 4159 4159 1.6526 0 1 1150600 + 19902 15439 12999 13003 19804 19804 0.08349180025709302 HTLHIIID 8 Unmodified _HTLHIIID_ 0 0 0 ENST00000396403.8_1_19:53994954-53995710:+|nuORF ENST00000396403.8_1_19:53994954-53995710:+|nuORF ENST00000396403.8_1_19:53994954-53995710:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2404479980469 2 481.276909 960.539266 NaN NaN NaN NaN NaN NaN NaN 160.45 1 155.65 155.15 156.15 -4.7952 0 0 0 0.22934 1 31907 31907 0.12286 0.058877 1 19903 9443 13000 13004 19805 19805 0.05741777651417124 HTLVLRKARCL 11 Unmodified _HTLVLRKARCL_ 0 0 0 REV__ENSG00000141642|ENST00000269466|ELAC1 REV__ENSG00000141642|ENST00000269466|ELAC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22760009765625 3 437.267691 1308.78124 -0.21636 -9.4607E-05 0.66891 0.00029249 0.45255 0.00019789 437.60250744955556 109.29 0.99065 104.84 104.46 105.45 -4.4518 40 27 2 0 0 0 0.66234 1 20914 20914 0.50596 0 1 1110900 + 19904 16647 13001 13005 19806 19806 0.139204847359224 HTNLPGPLT 9 Unmodified _HTNLPGPLT_ 0 0 0 nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG855|P10266|ERVK-10_pol;nc|ENSG821|P63135|ERVK-7_pol nc|ENSG851|Q9QC07|ERVK-18_pol nc|ENSG851|Q9QC07|ERVK-18_pol MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.154541015625 3 317.174903 948.50288 -0.024462 -7.7588E-06 -0.12528 -3.9735E-05 -0.14974 -4.7494E-05 317.17484478913724 40.789 0.48653 38.249 38.103 38.589 -2.5398 23 13 2 0 0 0 0.77797 1 7296 7296 2.7352 1.0826 1 879450 19905 12666 13002 13006 19807 19807 0.026569007546981993 HTNLPGPLT 9 Unmodified _HTNLPGPLT_ 0 0 0 nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG855|P10266|ERVK-10_pol;nc|ENSG821|P63135|ERVK-7_pol nc|ENSG851|Q9QC07|ERVK-18_pol nc|ENSG851|Q9QC07|ERVK-18_pol MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 317.174903 948.50288 -0.48647 -0.0001543 0.64877 0.00020577 0.16231 5.1479E-05 317.17505544159513 40.982 0.6355 38.347 38.041 38.677 -2.6348 0.031345 0.00024538 NaN 2.7352 28 17 3 NaN NaN NaN NaN 0 NaN NaN 0 912770 19906 12666 13002 13006 0.026569007546981993 HTNLPGPLT 9 Unmodified _HTNLPGPLT_ 0 0 0 nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG855|P10266|ERVK-10_pol;nc|ENSG821|P63135|ERVK-7_pol nc|ENSG851|Q9QC07|ERVK-18_pol nc|ENSG851|Q9QC07|ERVK-18_pol MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 317.174903 948.50288 -0.024462 -7.7588E-06 -0.12528 -3.9735E-05 -0.14974 -4.7494E-05 317.17484478913724 40.789 0.48653 38.249 38.103 38.589 -2.5398 -0.067003 -0.00049115 NaN 2.7352 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 879450 19907 12666 13002 13006 0.026569007546981993 HTNLPGPLT 9 Unmodified _HTNLPGPLT_ 0 0 0 nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG855|P10266|ERVK-10_pol;nc|ENSG821|P63135|ERVK-7_pol nc|ENSG851|Q9QC07|ERVK-18_pol nc|ENSG851|Q9QC07|ERVK-18_pol MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 317.174903 948.50288 -0.60871 -0.00019307 0.42228 0.00013394 -0.18643 -5.9131E-05 317.1749795939805 40.841 0.63155 38.352 38.04 38.672 -2.4896 0.035657 2.9868E-05 NaN 2.7352 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1069800 19908 12666 13002 13006 0.026569007546981993 HTPLAFSF 8 Unmodified _HTPLAFSF_ 0 0 0 nc|ENSG00000127423|Q9H7T9-2|AUNIP;ENSG00000127423|ENST00000374298|AUNIP nc|ENSG00000127423|Q9H7T9-2|AUNIP nc|ENSG00000127423|Q9H7T9-2|AUNIP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23907470703125 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 65.803 1 65.803 65.303 66.303 0 0 0 0 0.21452 1 12695 12695 13.508 0.97634 1 19909 12309 13003 13007 19808 19808 -0.002538693027076988 HTQPLPTPC 9 Unmodified _HTQPLPTPC_ 0 0 0 nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000467443.5_1_22:21831964-21846319:-|nuORF nc|ENSG00000183506|A4QPH2-2|PI4KAP2 nc|ENSG00000183506|A4QPH2-2|PI4KAP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.00543212890625 3 331.83226 992.474951 -0.41823 -0.00013878 0.6972 0.00023135 0.27898 9.2574E-05 331.8324103354399 22.485 0.35045 22.485 22.258 22.609 0 20 9 3 0 0 0 0.8825 1 3786 3786 0 0 1 1922600 19910 10149 13004 13008 19809 19809 -0.02158745497035852 HTRNLLRNHI 10 Unmodified _HTRNLLRNHI_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI;ENST00000515433.1_1_5:135385061-135390565:+|nuORF ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2452697753906 3 425.246055 1272.71634 NaN NaN NaN NaN NaN NaN NaN 86.518 1 86.518 86.018 87.018 0 0 0 0 2.8426 1 16887 16887 0.063865 0 1 19911 3150 13005 13009 19810 19810 0.09088626254288101 HTSHLRSTGR 10 Unmodified _HTSHLRSTGR_ 0 0 0 REV__ENST00000262460.4_1_20:25426623-25426713:+|nuORF REV__ENST00000262460.4_1_20:25426623-25426713:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3170166015625 2 576.305052 1150.59555 NaN NaN NaN NaN NaN NaN NaN 139.92 1 139.92 139.42 140.42 0 0 0 0 0.22588 1 27831 27831 9.544 0.79857 1 + 19912 20199 13006 13010 19811 19811 0.02627798540834192 HTVEVTLLIA 10 Unmodified _HTVEVTLLIA_ 0 0 0 REV__LAPTM4A|p.F175Lfs*5|2|0.2|ENSG00000068697|chr2:20034970-20034970|A/-|frameshift_variant REV__LAPTM4A|p.F175Lfs*5|2|0.2|ENSG00000068697|chr2:20034970-20034970|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7742919921875 2 548.324057 1094.63356 0.0051981 2.8503E-06 0.86808 0.00047599 0.87328 0.00047884 548.324405567773 41.552 0.3409 38.917 38.745 39.086 -2.6348 14 9 2 0 0 0 0.89521 1 7747 7747 10.824 0 1 709100 + 19913 14231 13007 13011 19812 19812 0.09002871682923796 HTVEVTLLIA 10 Unmodified _HTVEVTLLIA_ 0 0 0 REV__LAPTM4A|p.F175Lfs*5|2|0.2|ENSG00000068697|chr2:20034970-20034970|A/-|frameshift_variant REV__LAPTM4A|p.F175Lfs*5|2|0.2|ENSG00000068697|chr2:20034970-20034970|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7742919921875 2 548.324057 1094.63356 -0.019631 -1.0764E-05 1.1045 0.0006056 1.0848 0.00059484 548.3245074807037 41.405 0.48719 38.813 38.572 39.059 -2.5925 17 13 2 0 0 0 0.89521 1 7472 7472 10.824 0 1 624870 + 19914 14231 13007 13011 19813 19813 0.09002871682923796 HTVVAERRK 9 Unmodified _HTVVAERRK_ 0 0 0 DNAH17|p.A4035T|1|0.43|ENSG00000187775|chr17:78434151-78434151|C/T|missense_variant DNAH17|p.A4035T|1|0.43|ENSG00000187775|chr17:78434151-78434151|C/T|missense_variant DNAH17|p.A4035T|1|0.43|ENSG00000187775|chr17:78434151-78434151|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.774169921875 2 548.322714 1094.63087 0.43974 0.00024112 3.3418 0.0018324 3.7816 0.0020735 548.3243775086606 38.743 0.28806 38.743 38.567 38.856 0 12 7 2 0 0 0 0.80521 1 7196 7196 15.847 6.4641 1 948680 19915 862 13008 13012 19814 19814 0.08734461068593191 HTVVAERRK 9 Unmodified _HTVVAERRK_ 0 0 0 DNAH17|p.A4035T|1|0.43|ENSG00000187775|chr17:78434151-78434151|C/T|missense_variant DNAH17|p.A4035T|1|0.43|ENSG00000187775|chr17:78434151-78434151|C/T|missense_variant DNAH17|p.A4035T|1|0.43|ENSG00000187775|chr17:78434151-78434151|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 548.322714 1094.63087 0.1263 6.9255E-05 3.7033 0.0020306 3.8296 0.0020999 548.8262455798962 41.379 0.35363 38.889 38.708 39.062 -2.4896 0.048849 0.00018706 NaN 15.847 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 661190 19916 862 13008 13012 0.08734461068593191 HTYFYHLT 8 Unmodified _HTYFYHLT_ 0 0 0 ENSG00000143315|ENST00000368090|PIGM ENSG00000143315|ENST00000368090|PIGM ENSG00000143315|ENST00000368090|PIGM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.1235046386719 3 361.174903 1080.50288 -0.85792 -0.00030986 -0.72805 -0.00026295 -1.586 -0.00057281 361.1753384358711 80.342 0.69468 76.666 76.423 77.118 -3.676 31 19 3 0 0 0 1.0254 1 15267 15267 0 0 1 1542100 19917 4472 13009 13013 19815 19815 -0.03415099245307829 HVAPDLNIVY 10 Unmodified _HVAPDLNIVY_ 0 0 0 REV__nc|ENSG00000198522|Q9HCN4-4|GPN1 REV__nc|ENSG00000198522|Q9HCN4-4|GPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2080078125 3 380.873113 1139.59751 -0.82915 -0.0003158 1.3555 0.00051626 0.52632 0.00020046 380.8733600987772 81.961 0.44508 78.273 78.081 78.526 -3.6879 16 12 2 0 0 0 0.75587 1 15605 15605 3.8763 0.27984 1 862650 + 19918 19418 13010 13014 19816 19816 0.033294145060153824 HVAQARTKKI 10 Unmodified _HVAQARTKKI_ 0 0 0 REV__nc|ENSG00000175198|P05165-3|PCCA REV__nc|ENSG00000175198|P05165-3|PCCA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3231811523438 2 576.354014 1150.69348 NaN NaN NaN NaN NaN NaN NaN 121.26 1 116.57 116.07 117.07 -4.6873 0 0 0 0.22588 1 23276 23276 6.2058 0.9089 1 + 19919 18461 13011 13015 19817 19817 0.12415607136813378 HVAQDQEGY 9 Unmodified _HVAQDQEGY_ 0 0 0 REV__ENSG00000184117|ENST00000216121|NIPSNAP1 REV__ENSG00000184117|ENST00000216121|NIPSNAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.68896484375 2 523.73052 1045.44649 0.17088 8.9497E-05 2.4646 0.0012908 2.6355 0.0013803 523.7301784988713 116.47 0.83655 116.47 115.94 116.78 0 54 23 3 0 0 0 0.65439 1 22991 22991 9.3474 0.75416 1 6970600 + 19920 18879 13012 13016 19818 19818 -0.07441771872618119 HVAVSQERPE 10 Unmodified _HVAVSQERPE_ 0 0 0 REV__ENST00000463001.5_1_1:157765953-157771747:-|nuORF REV__ENST00000463001.5_1_1:157765953-157771747:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3267211914062 2 576.293819 1150.57309 0.18584 0.0001071 -2.5789 -0.0014862 -2.393 -0.0013791 576.2923301786954 123.77 0.38492 119.19 118.95 119.34 -4.5757 11 10 2 0 0 0 0.85325 1 24357 24357 3.9444 0 1 1957000 + 19921 21916 13013 13017 19819 19819 0.003821543525191373 HVDATTSMQY 10 Unmodified _HVDATTSMQY_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;ENST00000495260.5_1_4:123117925-123131067:+|nuORF nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3121337890625 2 576.753138 1151.49172 0.62322 0.00035944 -1.3595 -0.00078407 -0.73624 -0.00042463 576.7523765580269 45.997 0.41186 45.997 45.796 46.208 0 13 11 2 0 0 0 0.75233 1 8671 8671 29.082 15.176 1 1498900 19922 4201 13014 13018 19820 19820 -0.07796289401744616 HVDATTSMQY 10 Unmodified _HVDATTSMQY_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;ENST00000495260.5_1_4:123117925-123131067:+|nuORF nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.320556640625 2 576.753138 1151.49172 -0.072113 -4.1591E-05 -0.29198 -0.0001684 -0.36409 -0.00020999 576.7528715530948 49.056 0.42008 46.175 45.924 46.344 -2.8811 24 11 3 0 0 0 0.83242 1 9317 9317 14.838 0 1 2660400 19923 4201 13014 13018 19821 19821 -0.07796289401744616 HVDVPLSY 8 Unmodified _HVDVPLSY_ 0 0 0 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7;ENSG00000111700|ENST00000381545|SLCO1B3;nc|ENSG00000111700|Q9NPD5-2|SLCO1B3;nc|ENSG00000205754|G3V0H7|SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2489929199219 2 465.239993 928.465432 -0.096561 -4.4924E-05 0.03112 1.4478E-05 -0.065441 -3.0446E-05 465.23991847922287 93.076 0.82664 93.076 92.714 93.54 0 39 23 2 0 0 0 0.036592 5 18231 18163;18207;18231;18259;18303 98.807 55.839 1 7741100 19924 2638 13015 13019 19822;19823;19824;19825;19826 19824 -0.0016619051091311121 HVDVPLSY 8 Unmodified _HVDVPLSY_ 0 0 0 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7;ENSG00000111700|ENST00000381545|SLCO1B3;nc|ENSG00000111700|Q9NPD5-2|SLCO1B3;nc|ENSG00000205754|G3V0H7|SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23992919921875 2 465.239993 928.465432 -0.021829 -1.0156E-05 0.11576 5.3856E-05 0.093931 4.37E-05 465.2399728622729 96.942 0.83242 92.845 92.457 93.289 -4.0978 42 23 2 0 0 0 0.052729 3 19029 18980;19029;19077 106.85 57.177 1 9447900 19925 2638 13015 13019 19827;19828;19829 19828 -0.0016619051091311121 HVDVPLSY 8 Unmodified _HVDVPLSY_ 0 0 0 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7;ENSG00000111700|ENST00000381545|SLCO1B3;nc|ENSG00000111700|Q9NPD5-2|SLCO1B3;nc|ENSG00000205754|G3V0H7|SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2399597167969 2 465.239993 928.465432 0.1043 4.8526E-05 -0.078795 -3.6658E-05 0.025509 1.1868E-05 465.23989417870854 97.178 0.74814 92.943 92.539 93.287 -4.2348 41 21 2 0 0 0 0.052729 3 18546 18505;18546;18596 106.85 57.177 1 9669100 19926 2638 13015 13019 19830;19831;19832 19831 -0.0016619051091311121 HVDVPLSY 8 Unmodified _HVDVPLSY_ 0 0 0 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7;ENSG00000111700|ENST00000381545|SLCO1B3;nc|ENSG00000111700|Q9NPD5-2|SLCO1B3;nc|ENSG00000205754|G3V0H7|SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.23992919921875 2 465.239993 928.465432 -0.040547 -1.8864E-05 0.052669 2.4504E-05 0.012122 5.6396E-06 465.2399298439096 96.802 0.82272 92.883 92.54 93.363 -3.9194 41 23 2 0 0 0 0.036929 5 18571 18526;18556;18571;18616;18656 93.883 37.342 1 9793400 19927 2638 13015 13019 19833;19834;19835;19836;19837 19835 -0.0016619051091311121 HVEAWPGRAMR 11 Unmodified _HVEAWPGRAMR_ 0 0 0 REV__nc|ENSG00000060656|Q92729-3|PTPRU REV__nc|ENSG00000060656|Q92729-3|PTPRU MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2232360839844 3 437.224263 1308.65096 NaN NaN NaN NaN NaN NaN NaN 162.6 1 157.41 156.91 157.91 -5.1878 0 0 0 0.23324 1 31580 31580 2.6312 0 1 + 19928 14145 13016 13020 19838 19838 0.008978887369039512 HVEEYYTE 8 Unmodified _HVEEYYTE_ 0 0 0 REV__ENST00000497572.1_1_7:2622225-2624022:+|nuORF REV__ENST00000497572.1_1_7:2622225-2624022:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0726623535156 3 357.153945 1068.44001 -0.5336 -0.00019058 0.27426 9.7954E-05 -0.25933 -9.2621E-05 357.1539529699348 69.325 0.4532 69.325 69.071 69.524 0 14 12 2 0 0 0 1.0276 1 13375 13375 0.45834 0 1 826910 + 19929 15027 13017 13021 19839 19839 -0.09147709823992045 HVEEYYTE 8 Unmodified _HVEEYYTE_ 0 0 0 REV__ENST00000497572.1_1_7:2622225-2624022:+|nuORF REV__ENST00000497572.1_1_7:2622225-2624022:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.153945 1068.44001 -0.31795 -0.00011356 0.45232 0.00016155 0.13438 4.7993E-05 357.1541121084512 73.017 0.52341 69.479 69.087 69.61 -3.5385 0.076865 7.1885E-05 NaN 0.45834 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1617700 + 19930 15027 13017 13021 -0.09147709823992045 HVFLTELLYRI 11 Unmodified _HVFLTELLYRI_ 0 0 0 REV__TECRL|p.F296Sfs*21|1|0.34|ENSG00000205678|chr4:64281505-64281505|A/-|frameshift_variant REV__TECRL|p.F296Sfs*21|1|0.34|ENSG00000205678|chr4:64281505-64281505|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 468.6060791015625 3 468.606367 1402.79727 NaN NaN NaN NaN NaN NaN NaN 163.93 1 159.14 158.64 159.64 -4.7898 0 0 0 0.22632 1 32718 32718 1.4551 0 1 + 19931 19598 13018 13022 19840 19840 0.1119846945377958 HVGHFHQH 8 Unmodified _HVGHFHQH_ 0 0 0 REV__NKX2-3|p.A30V|1|0.4|ENSG00000119919|chr10:99533220-99533220|C/T|missense_variant REV__NKX2-3|p.A30V|1|0.4|ENSG00000119919|chr10:99533220-99533220|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.99951171875 3 333.49497 997.463081 -0.4085 -0.00013623 -1.0522 -0.00035089 -1.4607 -0.00048712 333.4949910719133 42.435 4.0156 39.716 39.277 43.293 -2.7191 325 113 6 0 0 0 1.0231 1 8428 8428 4.3292 1.334 1 1986299999.9999998 + 19932 24361 13019 13023 19841 19841 -0.03575181405346939 HVGLTPFILP 10 Unmodified _HVGLTPFILP_ 0 0 0 ENST00000415560.1_1_X:26766465-26767074:+|nuORF ENST00000415560.1_1_X:26766465-26767074:+|nuORF ENST00000415560.1_1_X:26766465-26767074:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.77734375 2 547.32386 1092.63317 0.0085573 4.6836E-06 -2.4025 -0.0013149 -2.3939 -0.0013102 547.3225376131112 64.52 0.17204 64.52 64.444 64.616 0 5 4 2 0 0 0 0.73842 1 12433 12433 7.2892 0.56607 1 625700 19933 9613 13020 13024 19842 19842 0.0905549675369457 HVGPASPS 8 Unmodified _HVGPASPS_ 0 0 0 ENST00000422437.5_1_6:32134299-32134953:+|nuORF ENST00000422437.5_1_6:32134299-32134953:+|nuORF ENST00000422437.5_1_6:32134299-32134953:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.5370178222656 2 376.190303 750.366053 NaN NaN NaN NaN NaN NaN NaN 27.492 1 25.709 25.209 26.209 -1.7821 0 0 0 0.23749 1 4888 4888 0.0082765 0 1 19934 9680 13021 13025 19843 19843 -0.01911588404993836 HVGYLVIL 8 Unmodified _HVGYLVIL_ 0 0 0 SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant;nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1;SLC9C1|p.S672Hfs*9|3|0.24|ENSG00000172139|chr3:112204376-112204376|A/-|frameshift_variant;SLC9C1|p.F702Lfs*6|1|0.31|ENSG00000172139|chr3:112204284-112204284|A/-|frameshift_variant SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 457.3169250488281 2 457.278921 912.543289 NaN NaN NaN NaN NaN NaN NaN 176.35 1 171.48 170.98 171.98 -4.8739 0 0 0 0.2396 1 35080 35080 0.0082765 0 1 19935 6194 13022 13026 19844 19844 0.08351867145142933 HVHHLQQREQ 10 Unmodified _HVHHLQQREQ_ 0 0 0 ENST00000418510.1_1_22:26043331-26044389:+|nuORF ENST00000418510.1_1_22:26043331-26044389:+|nuORF ENST00000418510.1_1_22:26043331-26044389:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.8942565917969 3 437.893681 1310.65921 NaN NaN NaN NaN NaN NaN NaN 10.401 1 9.4974 8.9974 9.9974 -0.90401 0 0 0 0.22588 1 1298 1298 0.15932 0 1 19936 9643 13023 13027 19845 19845 0.016311589778752023 HVHSTTAP 8 Unmodified _HVHSTTAP_ 0 0 0 REV__ADAMTS6|p.E952Sfs*89|1|0.1|ENSG00000049192|chr5:65188073-65188073|T/-|frameshift_variant REV__ADAMTS6|p.E952Sfs*89|1|0.1|ENSG00000049192|chr5:65188073-65188073|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2378234863281 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 84.344 1 80.434 79.934 80.934 -3.9093 0 0 0 0.21486 1 16031 16031 10.183 1.5901 1 + 19937 12949 13024 13028 19846 19846 -0.016205144849664066 HVHWAQQDCH 10 Unmodified _HVHWAQQDCH_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7560424804688 2 630.769988 1259.52542 NaN NaN NaN NaN NaN NaN NaN 85.333 1 81.669 81.169 82.169 -3.6641 0 0 0 2.8426 1 16682 16682 0.84494 0.57955 1 19938 7385 13025 13029 19847 19847 -0.09395823119325541 HVLAVVKEKVW 11 Unmodified _HVLAVVKEKVW_ 0 0 0 REV__nc|ENSG00000008517|P24001-7|IL32 REV__nc|ENSG00000008517|P24001-7|IL32 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.75262451171875 3 436.599324 1306.77614 0.037484 1.6365E-05 -0.15329 -6.6928E-05 -0.11581 -5.0563E-05 436.5991714428476 139.62 1.166 134.67 133.99 135.15 -4.952 64 32 3 0 0 0 0.66087 1 26806 26806 1.4551 1.2831 1 2425500 + 19939 13903 13026 13030 19848 19848 0.135025041449353 HVLAVVKEKVW 11 Unmodified _HVLAVVKEKVW_ 0 0 0 REV__nc|ENSG00000008517|P24001-7|IL32 REV__nc|ENSG00000008517|P24001-7|IL32 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 436.599324 1306.77614 -0.10189 -4.4487E-05 -0.11331 -4.947E-05 -0.2152 -9.3957E-05 436.59926197585514 138.99 1.1579 134.34 133.88 135.03 -4.6439 -0.17642 -3.4322E-07 NaN 1.4551 60 32 3 NaN NaN NaN NaN 0 NaN NaN 0 3194100 + 19940 13903 13026 13030 0.135025041449353 HVLAVVKEKVW 11 Unmodified _HVLAVVKEKVW_ 0 0 0 REV__nc|ENSG00000008517|P24001-7|IL32 REV__nc|ENSG00000008517|P24001-7|IL32 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 436.599324 1306.77614 0.037484 1.6365E-05 -0.15329 -6.6928E-05 -0.11581 -5.0563E-05 436.5991714428476 139.62 1.166 134.67 133.99 135.15 -4.952 0.14699 -5.2718E-05 NaN 1.4551 64 32 3 NaN NaN NaN NaN 0 NaN NaN 0 2425500 + 19941 13903 13026 13030 0.135025041449353 HVLEEVQQV 9 Unmodified _HVLEEVQQV_ 0 0 0 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27490234375 2 540.787838 1079.56112 -0.036199 -1.9576E-05 -0.9801 -0.00053003 -1.0163 -0.0005496 540.7871101482474 66.601 0.59417 66.601 66.31 66.904 0 24 16 2 0 0 0 0.74858 1 12892 12892 8.1555 0 1 2634100 19942 3978 13027 13031 19849 19849 0.024525376093379236 HVLEEVQQV 9 Unmodified _HVLEEVQQV_ 0 0 0 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2735595703125 2 540.787838 1079.56112 0.11324 6.124E-05 -0.75316 -0.0004073 -0.63991 -0.00034606 540.787235675344 69.681 0.46107 66.501 66.188 66.649 -3.1796 27 12 3 0 0 0 0.52242 1 13522 13522 29.082 8.667 1 2764600 19943 3978 13027 13031 19850 19850 0.024525376093379236 HVLFVPHL 8 Unmodified _HVLFVPHL_ 0 0 0 L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|108|3|anti-sense L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|108|3|anti-sense L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|108|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24444580078125 2 481.284537 960.554522 NaN NaN NaN NaN NaN NaN NaN 61.667 1 61.667 61.167 62.167 0 0 0 0 0.22722 1 11826 11826 0.68139 0.054566 1 19944 12033 13028 13032 19851 19851 0.07266689239258994 HVLIEMGY 8 Unmodified _HVLIEMGY_ 0 0 0 nc|ENSG00000095627|Q9BXT4-2|TDRD1;ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1;nc|ENSG00000095627|Q9BXT4-4|TDRD1 nc|ENSG00000095627|Q9BXT4-2|TDRD1 nc|ENSG00000095627|Q9BXT4-2|TDRD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2426452636719 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 96.412 1 92.338 91.838 92.838 -4.074 0 0 0 0.21181 1 18906 18906 15.768 0 1 19945 1865 13029 13033 19852 19852 -0.007929598659302428 HVLPPWPLQ 9 Unmodified _HVLPPWPLQ_ 0 0 0 ENST00000473223.5_1_1:155184463-155187072:-|nuORF ENST00000473223.5_1_1:155184463-155187072:-|nuORF ENST00000473223.5_1_1:155184463-155187072:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7896728515625 2 543.808377 1085.6022 NaN NaN NaN NaN NaN NaN NaN 151.28 1 146.04 145.54 146.54 -5.2365 0 0 0 0.23411 1 29321 29321 13.508 2.7084 1 19946 10238 13030 13034 19853 19853 0.06282343439465876 HVLYCTPDT 9 Unmodified _HVLYCTPDT_ 0 0 0 ENST00000324856.11_1_1:27107705-27107861:+|nuORF ENST00000324856.11_1_1:27107705-27107861:+|nuORF ENST00000324856.11_1_1:27107705-27107861:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.1645812988281 3 350.163787 1047.46953 NaN NaN NaN NaN NaN NaN NaN 77.358 1 73.895 73.395 74.395 -3.4633 0 0 0 0.23508 1 15102 15102 8.7454 4.4162 1 19947 8733 13031 13035 19854 19854 -0.052304690795153874 HVMGPPLR 8 Unmodified _HVMGPPLR_ 0 0 0 ENST00000519217.1_1_8:105441771-105456521:-|nuORF;ENSG00000147647|ENST00000351513|DPYS ENST00000519217.1_1_8:105441771-105456521:-|nuORF ENST00000519217.1_1_8:105441771-105456521:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75299072265625 2 453.752547 905.490542 NaN NaN NaN NaN NaN NaN NaN 34.199 1 31.882 31.382 32.382 -2.3175 0 0 0 0.2396 1 6274 6274 0.0082765 0 1 19948 4712 13032 13036 19855 19855 0.03401585810695451 HVMLPKDIAK 10 Unmodified _HVMLPKDIAK_ 0 0 0 ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B ENST00000477676.6_1_1:154947554-154951250:+|nuORF ENST00000477676.6_1_1:154947554-154951250:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3348388671875 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 45.96 1 45.96 45.46 46.46 0 0 0 0 0.22588 1 8648 8648 13.042 0 1 19949 6274 13033 13037 19856 19856 0.08394924421986616 HVMPVPFC 8 Unmodified _HVMPVPFC_ 0 0 0 REV__ENSG00000198756|ENST00000361927|COLGALT2 REV__ENSG00000198756|ENST00000361927|COLGALT2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24737548828125 2 465.222234 928.429915 NaN NaN NaN NaN NaN NaN NaN 24.866 1 23.013 22.513 23.513 -1.8534 0 0 0 0.2396 1 4062 4062 0.12286 0.11459 1 + 19950 19444 13034 13038 19857 19857 -0.03716267563913789 HVNRRRRLLYW 11 Unmodified _HVNRRRRLLYW_ 0 0 0 REV__ENST00000494883.1_1_9:134396759-134397813:+|nuORF REV__ENST00000494883.1_1_9:134396759-134397813:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6943969726562 3 523.639287 1567.89603 NaN NaN NaN NaN NaN NaN NaN 157.15 1 157.15 156.65 157.65 0 0 0 0 0.23698 1 31534 31534 0.40827 0 1 + 19951 16029 13035 13039 19858 19858 0.13479930262087692 HVNRRRRLLYW 11 Unmodified _HVNRRRRLLYW_ 0 0 0 REV__ENST00000494883.1_1_9:134396759-134397813:+|nuORF REV__ENST00000494883.1_1_9:134396759-134397813:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6852416992188 3 523.639287 1567.89603 NaN NaN NaN NaN NaN NaN NaN 157.16 1 157.16 156.66 157.66 0 0 0 0 0.22632 1 31538 31538 0.094841 0 1 + 19952 16029 13035 13039 19859 19859 0.13479930262087692 HVPVETLSN 9 Unmodified _HVPVETLSN_ 0 0 0 REV__nc|ENSG00000205213|Q9BXB1-2|LGR4 REV__nc|ENSG00000205213|Q9BXB1-2|LGR4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.994140625 3 332.510063 994.50836 -1.511 -0.00050242 1.2315 0.00040947 -0.27954 -9.295E-05 332.5104821450839 20.717 0.52201 18.996 18.765 19.287 -1.7211 35 14 4 0 0 0 0.87836 1 3193 3193 2.9952 0 1 9979100 + 19953 19582 13036 13040 19860 19860 0.010885795465242154 HVPVSLSYHL 10 Unmodified _HVPVSLSYHL_ 0 0 0 nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3352661132812 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 64.176 1 61.178 60.678 61.678 -2.9975 0 0 0 0.22588 1 12410 12410 6.7232 0 1 19954 1374 13037 13041 19861 19861 0.044211207429498245 HVQPCLEP 8 Unmodified _HVQPCLEP_ 0 0 0 REV__ENST00000428449.5_1_7:121945734-121946145:+|nuORF REV__ENST00000428449.5_1_7:121945734-121946145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.53643798828125 2 461.726195 921.437837 NaN NaN NaN NaN NaN NaN NaN 120.44 1 115.92 115.42 116.42 -4.5221 0 0 0 0.21171 1 23747 23747 15.847 2.3393 1 + 19955 21592 13038 13042 19862 19862 -0.026024170427945137 HVQPPRHH 8 Unmodified _HVQPPRHH_ 0 0 0 REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.0598449707031 3 336.514253 1006.52093 -2.282 -0.00076792 1.0758 0.00036204 -1.2061 -0.00040588 336.514559222898 15.502 0.13995 14.148 14.097 14.237 -1.3534 5 3 2 0 0 0 1.0276 1 2151 2151 0 0 1 151230 + 19956 18240 13039 13043 19863 19863 0.01793080520087642 HVQRRWFIRDK 11 Unmodified _HVQRRWFIRDK_ 0 0 0 REV__ENSG00000137674|ENST00000260228|MMP20 REV__ENSG00000137674|ENST00000260228|MMP20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 514.1898193359375 3 514.291776 1539.8535 NaN NaN NaN NaN NaN NaN NaN 91.686 1 91.686 91.186 92.186 0 0 0 0 0.22632 1 17924 17924 0.50596 0.41111 1 + 19957 16403 13040 13044 19864 19864 0.10516535133820071 HVRDGLNFG 9 Unmodified _HVRDGLNFG_ 0 0 0 ENSG00000179630|ENST00000325686|LACC1 ENSG00000179630|ENST00000325686|LACC1 ENSG00000179630|ENST00000325686|LACC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 507.7572021484375 2 507.759415 1013.50428 NaN NaN NaN NaN NaN NaN NaN 170.32 1 165.45 164.95 165.95 -4.873 0 0 0 0.23508 1 33699 33699 11.64 2.2572 1 19958 6639 13041 13045 19865 19865 -0.001934651565193235 HVRGGGAP 8 Unmodified _HVRGGGAP_ 0 0 0 REV__ENSG00000198455|ENST00000374888|ZXDB REV__ENSG00000198455|ENST00000374888|ZXDB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2151794433594 2 375.703912 749.39327 0.061526 2.3116E-05 1.6081 0.00060419 1.6697 0.0006273 375.70433576162947 38.304 0.42337 35.862 35.63 36.054 -2.4419 17 11 2 0 0 0 0.98792 1 6795 6795 9.3474 3.587 1 3081000 + 19959 19415 13042 13046 19866 19866 0.008549399260459722 HVRVRARTE 9 Unmodified _HVRVRARTE_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2187805175781 3 375.219617 1122.63702 NaN NaN NaN NaN NaN NaN NaN 57.402 1 54.151 53.651 54.651 -3.2517 0 0 0 0.23508 1 10656 10656 12.241 0 1 + 19960 17178;24395 13043 13047 19867 19867 0.08060979300125837 HVRWWRVL 8 Unmodified _HVRWWRVL_ 0 0 0 ENST00000542104.5_2_12:65089076-65089520:+|nuORF ENST00000542104.5_2_12:65089076-65089520:+|nuORF ENST00000542104.5_2_12:65089076-65089520:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3317260742188 2 576.332885 1150.65122 NaN NaN NaN NaN NaN NaN NaN 30.897 1 28.78 28.28 29.28 -2.1167 0 0 0 0.21486 1 5594 5594 5.7604 0.028577 1 19961 11086 13044 13048 19868 19868 0.08191676519072644 HVSLIDISS 9 Unmodified _HVSLIDISS_ 0 0 0 RASGRP3|p.N237Ifs*5|1|0.36|ENSG00000152689|chr2:33524447-33524447|A/-|frameshift_variant;nc|ENSG00000152689|Q8IV61-2|RASGRP3;ENSG00000152689|ENST00000403687|RASGRP3 RASGRP3|p.N237Ifs*5|1|0.36|ENSG00000152689|chr2:33524447-33524447|A/-|frameshift_variant RASGRP3|p.N237Ifs*5|1|0.36|ENSG00000152689|chr2:33524447-33524447|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.17938232421875 3 324.178313 969.513111 NaN NaN NaN NaN NaN NaN NaN 68.81 1 65.274 64.774 65.774 -3.5362 0 0 0 0.23508 1 12943 12943 0.96228 0 1 19962 4937 13045 13049 19869 19869 0.027134636892810704 HVTCAHAA 8 Unmodified _HVTCAHAA_ 0 0 0 nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENST00000495890.1_1_9:7049197-7103927:+|nuORF;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENST00000589104.5_1_19:5070919-5151519:+|nuORF nc|ENSG00000293552|Q9H3R0-2|KDM4C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.1915588378906 2 405.18978 808.365007 NaN NaN NaN NaN NaN NaN NaN 64.13 1 61.132 60.632 61.632 -2.9975 0 0 0 0.21486 1 12400 12400 5.7604 0.52976 1 19963 2412;3488 13046 13050 19870 19870 -0.04684126045560788 HVTCSSGA 8 Unmodified _HVTCSSGA_ 0 0 0 REV__NOC4L|p.P381Lfs*103|1|0.35|ENSG00000184967|chr12:132151548-132151548|C/-|frameshift_variant REV__NOC4L|p.P381Lfs*103|1|0.35|ENSG00000184967|chr12:132151548-132151548|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21990966796875 2 381.16597 760.317388 NaN NaN NaN NaN NaN NaN NaN 27.492 1 25.737 25.237 26.237 -1.7552 0 0 0 0.21323 1 4605 4605 14.582 2.0501 1 + 19964 24371 13047 13051 19871 19871 -0.07235825036411825 HVTFRERWFEY 11 Unmodified _HVTFRERWFEY_ 0 0 0 REV__LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant REV__LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3832397460938 2 785.3835 1568.75245 NaN NaN NaN NaN NaN NaN NaN 103.56 1 103.56 103.06 104.06 0 0 0 0 0.22632 1 20353 20353 0.094841 0.094841 1 + 19965 23787 13048 13052 19872 19872 -0.009179613595506453 HVTFRERWFEY 11 Unmodified _HVTFRERWFEY_ 0 0 0 REV__LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant REV__LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3864135742188 2 785.3835 1568.75245 NaN NaN NaN NaN NaN NaN NaN 168.39 1 168.39 167.89 168.89 0 0 0 0 0.22632 1 34482 34482 1.4551 0.94916 1 + 19966 23787 13048 13052 19873 19873 -0.009179613595506453 HVTFRERWFEY 11 Unmodified _HVTFRERWFEY_ 0 0 0 REV__LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant REV__LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3866577148438 2 785.3835 1568.75245 NaN NaN NaN NaN NaN NaN NaN 174.84 1 174.84 174.34 175.34 0 0 0 0 0.22632 1 36207 36207 0.00056442 0.00056442 1 + 19967 23787 13048 13052 19874 19874 -0.009179613595506453 HVTFRERWFEY 11 Unmodified _HVTFRERWFEY_ 0 0 0 REV__LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant REV__LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3811645507812 2 785.3835 1568.75245 NaN NaN NaN NaN NaN NaN NaN 107 1 102.59 102.09 103.09 -4.4121 0 0 0 0.22632 1 20526 20526 0.094841 0.087559 1 + 19968 23787 13048 13052 19875 19875 -0.009179613595506453 HVTFRERWFEY 11 Unmodified _HVTFRERWFEY_ 0 0 0 REV__LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant REV__LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3836059570312 2 785.3835 1568.75245 NaN NaN NaN NaN NaN NaN NaN 88.45 1 84.7 84.2 85.2 -3.7501 0 0 0 0.22632 1 16930 16930 0.094841 0 1 + 19969 23787 13048 13052 19876 19876 -0.009179613595506453 HVTFRERWFEY 11 Unmodified _HVTFRERWFEY_ 0 0 0 REV__LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant REV__LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3823852539062 2 785.3835 1568.75245 NaN NaN NaN NaN NaN NaN NaN 117.14 1 112.78 112.28 113.28 -4.3585 0 0 0 0.22632 1 22549 22549 0.094841 0.094841 1 + 19970 23787 13048 13052 19877 19877 -0.009179613595506453 HVTGAQRGAVR 11 Unmodified _HVTGAQRGAVR_ 0 0 0 nc|ENSG00000175463|Q8IV04-2|TBC1D10C;TBC1D10C|p.A321Rfs*56|1|0.29|ENSG00000175463|chr11:67409093-67409094|-/C|frameshift_variant nc|ENSG00000175463|Q8IV04-2|TBC1D10C nc|ENSG00000175463|Q8IV04-2|TBC1D10C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3167724609375 2 576.323245 1150.63194 NaN NaN NaN NaN NaN NaN NaN 76.836 1 73.07 72.57 73.57 -3.7664 0 0 0 0.22632 1 14557 14557 0.172 0 1 19971 12475 13049 13053 19878 19878 0.06264675437500955 HVTHPGEM 8 Unmodified _HVTHPGEM_ 0 0 0 REV__FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant REV__FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7616271972656 2 454.20817 906.401786 NaN NaN NaN NaN NaN NaN NaN 64.981 1 61.698 61.198 62.198 -3.2832 0 0 0 0.23366 1 12207 12207 0.25148 0 1 + 19972 15927 13050 13054 19879 19879 -0.055158742196454114 HVTIPGQQDK 10 Unmodified _HVTIPGQQDK_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2109375 3 374.86825 1121.58292 0.054217 2.0324E-05 -1.2651 -0.00047423 -1.2108 -0.00045391 374.86739395222577 53.055 0.63054 49.967 49.726 50.356 -3.0876 31 17 3 0 0 0 0.45112 1 9778 9778 0.20733 0 1 2219800 19973 1957 13051 13055 19880 19880 0.026993423579142473 HVTMDEAV 8 Unmodified _HVTMDEAV_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 451.1971740722656 2 451.207835 900.401117 NaN NaN NaN NaN NaN NaN NaN 82.882 1 79.274 78.774 79.774 -3.6079 0 0 0 0.23366 1 16199 16199 0.25148 0.12861 1 + 19974 19398 13052 13056 19881 19881 -0.05306713659365414 HVTMKQLR 8 Unmodified _HVTMKQLR_ 0 0 0 REV__ENST00000296509.10_1_4:120982079-120983154:-|nuORF REV__ENST00000296509.10_1_4:120982079-120983154:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.1602783203125 3 338.195533 1011.56477 NaN NaN NaN NaN NaN NaN NaN 83.742 1 79.843 79.343 80.343 -3.8987 0 0 0 0.23487 1 15910 15910 0.62683 0 1 + 19975 20374 13053 13057 19882 19882 0.05944928902204083 HVVRLTTFF 9 Unmodified _HVVRLTTFF_ 0 0 0 REV__ENST00000417509.5_1_7:75616492-75616693:-|nuORF REV__ENST00000417509.5_1_7:75616492-75616693:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 373.3215026855469 3 373.881831 1118.62366 -0.3656 -0.00013669 -1.9634 -0.00073406 -2.329 -0.00087076 373.8806159928777 71.307 1.521 68.057 67.635 69.156 -3.2492 61 42 2 0 0 0 0.88211 1 14056 14056 0 0 1 3619200 + 19976 19191 13054 13058 19883 19883 0.06909728468190224 HVYAVGYAHY 10 Unmodified _HVYAVGYAHY_ 0 0 0 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2495727539062 2 590.282723 1178.55089 NaN NaN NaN NaN NaN NaN NaN 93.901 1 90.057 89.557 90.557 -3.844 0 0 0 0.22588 1 18007 18007 4.3292 0 1 + 19977 25443 13055 13059 19884 19884 -0.031240253252462935 HVYDMDSLY 9 Unmodified _HVYDMDSLY_ 0 0 0 REV__EPHA3|p.G741D|1|0.19|ENSG00000044524|chr3:89431235-89431235|G/A|missense_variant REV__EPHA3|p.G741D|1|0.19|ENSG00000044524|chr3:89431235-89431235|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2187805175781 3 381.498947 1141.47501 NaN NaN NaN NaN NaN NaN NaN 31.467 1 29.237 28.737 29.737 -2.2305 0 0 0 0.23508 1 5711 5711 2.9952 0.26005 1 + 19978 23492 13056 13060 19885 19885 -0.09006790287685362 HVYIYIYMYIY 11 Unmodified _HVYIYIYMYIY_ 0 0 0 ENST00000342756.9_1_4:57368535-57368814:+|nuORF ENST00000342756.9_1_4:57368535-57368814:+|nuORF ENST00000342756.9_1_4:57368535-57368814:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 514.2564697265625 3 514.256346 1539.74721 NaN NaN NaN NaN NaN NaN NaN 144.18 1 139.51 139.01 140.01 -4.6694 0 0 0 0.22632 1 28541 28541 1.4074 0 1 19979 8864 13057 13061 19886 19886 -0.0010740126635937486 HVYWWRYC 8 Unmodified _HVYWWRYC_ 0 0 0 ENSG00000004142|ENST00000540200|POLDIP2 ENSG00000004142|ENST00000540200|POLDIP2 ENSG00000004142|ENST00000540200|POLDIP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.31219482421875 3 404.851766 1211.53347 -0.43559 -0.00017635 1.5239 0.00061696 1.0883 0.00044061 404.85238502896794 17.288 0.31953 15.977 15.783 16.103 -1.3109 12 8 2 0 0 0 1.0276 1 2730 2730 1.8442 0.6509 1 783050 19980 972 13058 13062 19887 19887 -0.06383644131892652 HWAKSHVP 8 Unmodified _HWAKSHVP_ 0 0 0 REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25433349609375 2 481.253769 960.492984 NaN NaN NaN NaN NaN NaN NaN 179.07 1 174.28 173.78 174.78 -4.7898 0 0 0 0.21486 1 36639 36639 0.79363 0 1 + 19981 17110 13059 13063 19888 19888 0.01115757539992046 HWIGGNRAS 9 Unmodified _HWIGGNRAS_ 0 0 0 nc|ENSG00000164808|Q14159-3|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.19622802734375 3 333.170264 996.488962 NaN NaN NaN NaN NaN NaN NaN 89.074 1 89.074 88.574 89.574 0 0 0 0 0.23508 1 17392 17392 2.4985 0 1 19982 12427 13060 13064 19889 19889 -0.009423319537290809 HWIGGNRAS 9 Unmodified _HWIGGNRAS_ 0 0 0 nc|ENSG00000164808|Q14159-3|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.1690368652344 3 333.170264 996.488962 NaN NaN NaN NaN NaN NaN NaN 92.485 1 88.56 88.06 89.06 -3.9251 0 0 0 0.23508 1 18113 18113 2.4985 0 1 19983 12427 13060 13064 19890 19890 -0.009423319537290809 HWKEICDY 8 Unmodified _HWKEICDY_ 0 0 0 nc|ENSG00000132872|Q9H2B2-2|SYT4;ENSG00000132872|ENST00000255224|SYT4 nc|ENSG00000132872|Q9H2B2-2|SYT4 nc|ENSG00000132872|Q9H2B2-2|SYT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7753295898438 2 547.242209 1092.46987 0.11237 6.1493E-05 -0.86198 -0.00047171 -0.74961 -0.00041022 547.2419283648304 37.521 0.68841 35.173 34.687 35.376 -2.3479 30 19 2 0 0 0 0.69887 1 6601 6601 14.582 4.3983 1 1883900 19984 3768 13061 13065 19891 19891 -0.07267049359666089 HWLMRRRRRKQ 11 Unmodified _HWLMRRRRRKQ_ 0 0 0 ENSG00000167543|ENST00000301057|TP53I13;ENST00000579674.1_1_17:27898877-27899117:+|nuORF ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.26416015625 3 541.651421 1621.93243 0.32003 0.00017334 1.5522 0.00084078 1.8723 0.0010141 541.6521550331462 146.02 0.20738 146.02 145.91 146.11 0 12 5 3 0 0 0 0.96225 1 29194 29194 0.45452 0.45452 1 2066200 19985 5816 13062 13066 19892 19892 0.14634483887107308 HWLMRRRRRKQ 11 Unmodified _HWLMRRRRRKQ_ 0 0 0 ENSG00000167543|ENST00000301057|TP53I13;ENST00000579674.1_1_17:27898877-27899117:+|nuORF ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.268310546875 3 541.651421 1621.93243 NaN NaN NaN NaN NaN NaN NaN 32.917 1 30.77 30.27 31.27 -2.1468 0 0 0 0.22632 1 5726 5726 0 0 1 19986 5816 13062 13066 19893 19893 0.14634483887107308 HWLMRRRRRKQ 11 Unmodified _HWLMRRRRRKQ_ 0 0 0 ENSG00000167543|ENST00000301057|TP53I13;ENST00000579674.1_1_17:27898877-27899117:+|nuORF ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2772216796875 3 541.651421 1621.93243 NaN NaN NaN NaN NaN NaN NaN 105.38 1 101.01 100.51 101.51 -4.3764 0 0 0 0.22632 1 20200 20200 0.00056442 0.00056442 1 19987 5816 13062 13066 19894 19894 0.14634483887107308 HWLRFFYLYHF 11 Unmodified _HWLRFFYLYHF_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3742065429688 2 814.911696 1627.80884 NaN NaN NaN NaN NaN NaN NaN 175.19 1 170.3 169.8 170.8 -4.8916 0 0 0 0.22632 1 34917 34917 0.026206 0.026206 1 19988 6763 13063 13067 19895 19895 0.020047112677957557 HWMRLFLRQYD 11 Unmodified _HWMRLFLRQYD_ 0 0 0 REV__ENST00000581856.5_1_18:28923397-28923595:-|nuORF REV__ENST00000581856.5_1_18:28923397-28923595:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2620239257812 3 522.266239 1563.77689 NaN NaN NaN NaN NaN NaN NaN 132.93 1 132.93 132.43 133.43 0 0 0 0 0.22632 1 26288 26288 1.4551 0 1 + 19989 23246 13064 13068 19896 19896 0.017549755223171815 HWNRFYFRIRF 11 Unmodified _HWNRFYFRIRF_ 0 0 0 REV__ENSG00000105397|ENST00000525621|TYK2 REV__ENSG00000105397|ENST00000525621|TYK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7899780273438 3 547.956505 1640.84768 NaN NaN NaN NaN NaN NaN NaN 137.75 1 132.83 132.33 133.33 -4.9216 0 0 0 0.23698 1 26484 26484 0.094841 0.021578 1 + 19990 14987 13065 13069 19897 19897 0.05289436622138055 HWNTFYFRMRY 11 Unmodified _HWNTFYFRMRY_ 0 0 0 REV__JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant REV__JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2670288085938 3 540.922472 1619.74559 0.29592 0.00016007 -1.0879 -0.00058845 -0.79194 -0.00042838 541.2561273369889 147.96 0.13489 143.25 143.13 143.27 -4.7095 5 3 2 0 0 0 0.89134 1 29352 29352 0.094841 0.068635 1 1946500 + 19991 23690 13066 13070 19898 19898 -0.03949597511768843 HWRPWRPDKT 10 Unmodified _HWRPWRPDKT_ 0 0 0 ENSG00000119720|ENST00000354366|NRDE2;NRDE2|p.N752Tfs*5|1|0.34|ENSG00000119720|chr14:90289120-90289120|T/-|frameshift_variant ENSG00000119720|ENST00000354366|NRDE2 ENSG00000119720|ENST00000354366|NRDE2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2405090332031 3 460.242422 1377.70544 NaN NaN NaN NaN NaN NaN NaN 161.07 1 155.81 155.31 156.31 -5.2526 0 0 0 2.8426 1 31255 31255 0.043787 0.017581 1 19992 3098 13067 13071 19899 19899 0.031692238799450934 HWRQWNRIFRW 11 Unmodified _HWRQWNRIFRW_ 0 0 0 CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant;CACNA1S|p.P1346Qfs*78|1|0.24|ENSG00000081248|chr1:201051060-201051060|G/-|frameshift_variant;ENSG00000081248|ENST00000362061|CACNA1S CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3919067382812 2 842.939642 1683.86473 NaN NaN NaN NaN NaN NaN NaN 151.64 1 146.46 145.96 146.96 -5.1759 0 0 0 0.23698 1 29388 29388 0.30703 0.30703 1 19993 365 13068 13072 19900 19900 0.050153572279441505 HWTNYNRFG 9 Unmodified _HWTNYNRFG_ 0 0 0 REV__ENST00000323460.9_1_3:196658379-196658646:+|nuORF REV__ENST00000323460.9_1_3:196658379-196658646:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 398.8525695800781 3 398.852823 1193.53664 NaN NaN NaN NaN NaN NaN NaN 10.118 1 9.3237 8.8237 9.8237 -0.79424 0 0 0 0.19631 1 1235 1235 0.20686 0 1 + 19994 20566 13069 13073 19901 19901 -0.052386777535502915 HWVRQATG 8 Unmodified _HWVRQATG_ 0 0 0 nc|ENSG00000211942|P01766|IGHV3-13 nc|ENSG00000211942|P01766|IGHV3-13 nc|ENSG00000211942|P01766|IGHV3-13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7239990234375 2 477.74885 953.483148 -0.0049088 -2.3452E-06 -1.1809 -0.00056417 -1.1858 -0.00056652 477.748223707354 45.135 0.68124 42.345 42.024 42.705 -2.79 54 18 4 0 0 0 0.70613 1 8538 8538 13.508 0.46542 1 7049900 19995 12583 13070 13074 19902 19902 0.004545695346109824 HWWLRGWCRRW 11 Unmodified _HWWLRGWCRRW_ 0 0 0 ENST00000473038.5_1_1:46033610-46035625:+|nuORF ENST00000473038.5_1_1:46033610-46035625:+|nuORF ENST00000473038.5_1_1:46033610-46035625:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.787841796875 3 547.942201 1640.80477 NaN NaN NaN NaN NaN NaN NaN 54.39 1 54.39 53.89 54.89 0 0 0 0 0.23698 1 10370 10370 0.08335 0.08335 1 19996 10235 13071 13075 19903 19903 0.010003432930716372 HWWRFLVIWIL 11 Unmodified _HWWRFLVIWIL_ 0 0 0 ENST00000526903.1_1_11:71671811-71693962:+|nuORF;ENST00000528683.5_1_11:71640101-71701796:+|nuORF;nc|ENSG00000137522|Q9H920-2|RNF121;ENST00000526549.5_1_11:71673326-71707358:+|nuORF;ENSG00000137522|ENST00000361756|RNF121 ENST00000526903.1_1_11:71671811-71693962:+|nuORF ENST00000526903.1_1_11:71671811-71693962:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6939697265625 3 523.63448 1567.88161 NaN NaN NaN NaN NaN NaN NaN 156.29 1 151 150.5 151.5 -5.2854 0 0 0 0.23698 1 30317 30317 0.50596 0.09769 1 19997 4091 13072 13076 19904 19904 0.12038465061209536 HYAPPAPP 8 Unmodified _HYAPPAPP_ 0 0 0 ENSG00000127528|ENST00000248071|KLF2 ENSG00000127528|ENST00000248071|KLF2 ENSG00000127528|ENST00000248071|KLF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2439270019531 2 425.216321 848.418088 NaN NaN NaN NaN NaN NaN NaN 103.6 1 99.254 98.754 99.754 -4.346 0 0 0 0.23664 1 19843 19843 3.2813 0 1 19998 3480 13073 13077 19905 19905 -0.012184249912479572 HYEDLALG 8 Unmodified _HYEDLALG_ 0 0 0 tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1 tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1 tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24578857421875 2 459.2218 916.429047 -0.068623 -3.1513E-05 0.1524 6.9983E-05 0.083773 3.847E-05 459.22184979855837 50.9 0.66343 47.848 47.506 48.169 -3.0517 54 18 4 0 0 0 0.53444 1 9367 9367 26.341 4.5946 1 13749000 19999 26164 13074 13078 19906 19906 -0.03251067407609298 HYENEMHKIFS 11 Unmodified _HYENEMHKIFS_ 0 0 0 REV__NOS1|p.R672H|1|0.39|ENSG00000089250|chr12:117265437-117265437|C/T|missense_variant REV__NOS1|p.R672H|1|0.39|ENSG00000089250|chr12:117265437-117265437|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73394775390625 3 478.887205 1433.63978 NaN NaN NaN NaN NaN NaN NaN 112.86 1 112.86 112.36 113.36 0 0 0 0 0.22632 1 22196 22196 1.4551 0 1 + 20000 24376 13075 13079 19907 19907 -0.05968978147870985 HYEWWRKILKY 11 Unmodified _HYEWWRKILKY_ 0 0 0 nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant;PIEZO2|p.Y2489Sfs*7|1|0.06|ENSG00000154864|chr18:10680346-10680347|-/GG|frameshift_variant;PIEZO2|p.L2716Ffs*33|1|0.12|ENSG00000154864|chr18:10671638-10671639|-/A|frameshift_variant nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5-2|PIEZO2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3814086914062 2 811.435535 1620.85652 NaN NaN NaN NaN NaN NaN NaN 166.79 1 162 161.5 162.5 -4.7898 0 0 0 0.22632 1 33552 33552 0.094841 0.094841 1 20001 5030 13076 13080 19908 19908 0.07092365467997297 HYFEYEYRMRQ 11 Unmodified _HYFEYEYRMRQ_ 0 0 0 REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3646240234375 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 65.557 1 65.557 65.057 66.057 0 0 0 0 0.23698 1 12643 12643 0.30703 0 1 + 20002 15272 13077 13081 19909 19909 -0.071182153365271 HYFEYEYRMRQ 11 Unmodified _HYFEYEYRMRQ_ 0 0 0 REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3640747070312 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 73.233 1 73.233 72.733 73.733 0 0 0 0 0.22632 1 14212 14212 0 0 1 + 20003 15272 13077 13081 19910 19910 -0.071182153365271 HYFEYEYRMRQ 11 Unmodified _HYFEYEYRMRQ_ 0 0 0 REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.364013671875 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 119.38 1 114.85 114.35 115.35 -4.5221 0 0 0 0.22632 1 23541 23541 0 0 1 + 20004 15272 13077 13081 19911 19911 -0.071182153365271 HYFEYEYRMRQ 11 Unmodified _HYFEYEYRMRQ_ 0 0 0 REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3619995117188 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 148.29 1 143.58 143.08 144.08 -4.7095 0 0 0 0.22632 1 29443 29443 0 0 1 + 20005 15272 13077 13081 19912 19912 -0.071182153365271 HYFEYEYRMRQ 11 Unmodified _HYFEYEYRMRQ_ 0 0 0 REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3638916015625 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 154.43 1 149.66 149.16 150.16 -4.7684 0 0 0 0.23698 1 30693 30693 0 0 1 + 20006 15272 13077 13081 19913 19913 -0.071182153365271 HYFEYEYRMRQ 11 Unmodified _HYFEYEYRMRQ_ 0 0 0 REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.36767578125 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 161.41 1 156.62 156.12 157.12 -4.7952 0 0 0 0.22632 1 32101 32101 0.026206 0 1 + 20007 15272 13077 13081 19914 19914 -0.071182153365271 HYFEYEYRMRQ 11 Unmodified _HYFEYEYRMRQ_ 0 0 0 REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2793579101562 3 541.245392 1620.71435 NaN NaN NaN NaN NaN NaN NaN 38.954 1 36.512 36.012 37.012 -2.4419 0 0 0 0.22632 1 6946 6946 0.172 0 1 + 20008 15272 13077 13081 19915 19915 -0.071182153365271 HYFEYEYRMRQ 11 Unmodified _HYFEYEYRMRQ_ 0 0 0 REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3642578125 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 48.738 1 45.739 45.239 46.239 -2.999 0 0 0 0.22632 1 8902 8902 0 0 1 + 20009 15272 13077 13081 19916 19916 -0.071182153365271 HYFEYEYRMRQ 11 Unmodified _HYFEYEYRMRQ_ 0 0 0 REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3651123046875 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 117.18 1 112.59 112.09 113.09 -4.5815 0 0 0 0.22632 1 22485 22485 0.094841 0 1 + 20010 15272 13077 13081 19917 19917 -0.071182153365271 HYFEYEYRMRQ 11 Unmodified _HYFEYEYRMRQ_ 0 0 0 REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3643188476562 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 97.061 1 93.142 92.642 93.642 -3.9194 0 0 0 0.22632 1 18630 18630 0 0 1 + 20011 15272 13077 13081 19918 19918 -0.071182153365271 HYFEYEYRMRQ 11 Unmodified _HYFEYEYRMRQ_ 0 0 0 REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3640747070312 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 156.85 1 151.58 151.08 152.08 -5.2712 0 0 0 0.22632 1 30426 30426 0 0 1 + 20012 15272 13077 13081 19919 19919 -0.071182153365271 HYGPKGWG 8 Unmodified _HYGPKGWG_ 0 0 0 REV__GPR52|p.S332Rfs*10|1|0.36|ENSG00000203737|chr1:174449102-174449105|CTGT/-|frameshift_variant REV__GPR52|p.S332Rfs*10|1|0.36|ENSG00000203737|chr1:174449102-174449105|CTGT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 301.1485900878906 3 301.148688 900.424236 NaN NaN NaN NaN NaN NaN NaN 109.3 1 109.3 108.8 109.8 0 0 0 0 0.21486 1 21490 21490 0.45834 0 1 + 20013 19497 13078 13082 19920 19920 -0.02995906759713307 HYKNHPKY 8 Unmodified _HYKNHPKY_ 0 0 0 nc|ENSG00000121933|P0DMS9|TMIGD3;ENSG00000121933|ENST00000369716|TMIGD3 nc|ENSG00000121933|P0DMS9|TMIGD3 nc|ENSG00000121933|P0DMS9|TMIGD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7786865234375 2 543.777608 1085.54066 NaN NaN NaN NaN NaN NaN NaN 67.459 1 67.459 66.959 67.959 0 0 0 0 0.2343 1 13041 13041 0.25148 0 1 20014 3198 13079 13083 19921 19921 0.001314117401761905 HYLEVLFR 8 Unmodified _HYLEVLFR_ 0 0 0 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;XRN1|p.M1309Cfs*14|1|0.4|ENSG00000114127|chr3:142335462-142335462|T/-|frameshift_variant;nc|ENSG00000114127|Q8IZH2-3|XRN1;XRN1|p.L525Yfs*9|1|0.08|ENSG00000114127|chr3:142414154-142414154|A/-|frameshift_variant;XRN1|p.L671*|1|0.28|ENSG00000114127|chr3:142403765-142403765|A/-|frameshift_variant;XRN1|p.L671Ffs*2|1|0.14|ENSG00000114127|chr3:142403764-142403765|-/AA|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018127441406 3 359.534431 1075.58147 -0.37618 -0.00013525 -0.58012 -0.00020857 -0.9563 -0.00034382 359.5343027019554 70.581 0.66999 67.332 66.931 67.601 -3.2492 46 18 3 0 0 0 0.64512 1 13654 13654 19.257 3.4098 1 3609700 20015 26585;2778 13080 13084 19922 19922 0.046697530598066805 HYLEVLFR 8 Unmodified _HYLEVLFR_ 0 0 0 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;XRN1|p.M1309Cfs*14|1|0.4|ENSG00000114127|chr3:142335462-142335462|T/-|frameshift_variant;nc|ENSG00000114127|Q8IZH2-3|XRN1;XRN1|p.L525Yfs*9|1|0.08|ENSG00000114127|chr3:142414154-142414154|A/-|frameshift_variant;XRN1|p.L671*|1|0.28|ENSG00000114127|chr3:142403765-142403765|A/-|frameshift_variant;XRN1|p.L671Ffs*2|1|0.14|ENSG00000114127|chr3:142403764-142403765|-/AA|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2020263671875 3 359.534431 1075.58147 -0.335 -0.00012045 -0.79402 -0.00028548 -1.129 -0.00040592 359.534264136935 70.924 0.95442 67.457 67.096 68.05 -3.467 47 26 3 0 0 0 0.73402 1 13395 13395 9.3831 2.2814 1 2730400 20016 26585;2778 13080 13084 19923 19923 0.046697530598066805 HYLEVLFR 8 Unmodified _HYLEVLFR_ 0 0 0 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;XRN1|p.M1309Cfs*14|1|0.4|ENSG00000114127|chr3:142335462-142335462|T/-|frameshift_variant;nc|ENSG00000114127|Q8IZH2-3|XRN1;XRN1|p.L525Yfs*9|1|0.08|ENSG00000114127|chr3:142414154-142414154|A/-|frameshift_variant;XRN1|p.L671*|1|0.28|ENSG00000114127|chr3:142403765-142403765|A/-|frameshift_variant;XRN1|p.L671Ffs*2|1|0.14|ENSG00000114127|chr3:142403764-142403765|-/AA|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.534431 1075.58147 0.3523 0.00012666 -1.2567 -0.00045184 -0.90445 -0.00032518 359.5340142619139 71.013 0.76709 67.433 66.874 67.641 -3.5798 -0.037905 -0.00048479 NaN 19.257 46 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3413900 20017 26585;2778 13080 13084 0.046697530598066805 HYLLECRDLWR 11 Unmodified _HYLLECRDLWR_ 0 0 0 ENKD1|p.R252C|1|0.36|ENSG00000124074|chr16:67663546-67663546|G/A|missense_variant ENKD1|p.R252C|1|0.36|ENSG00000124074|chr16:67663546-67663546|G/A|missense_variant ENKD1|p.R252C|1|0.36|ENSG00000124074|chr16:67663546-67663546|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 752.3862915039062 2 752.379903 1502.74525 NaN NaN NaN NaN NaN NaN NaN 54.663 1 51.525 51.025 52.025 -3.1377 0 0 0 0.23379 1 10123 10123 5.2969 0.39987 1 20018 945 13081 13085 19924 19924 0.013989827683872136 HYPNSPLA 8 Unmodified _HYPNSPLA_ 0 0 0 REV__ENST00000510104.5_1_5:140075669-140075852:+|nuORF REV__ENST00000510104.5_1_5:140075669-140075852:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 300.15234375 3 300.152099 897.434466 NaN NaN NaN NaN NaN NaN NaN 115.16 1 110.68 110.18 111.18 -4.4726 0 0 0 0.21486 1 22696 22696 0.45834 0 1 + 20019 22535 13082 13086 19925 19925 -0.018353438251324405 HYQIHRIRHFY 11 Unmodified _HYQIHRIRHFY_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3971557617188 2 785.412926 1568.8113 NaN NaN NaN NaN NaN NaN NaN 166.22 1 166.22 165.72 166.72 0 0 0 0 0.22632 1 33830 33830 0.00056442 0 1 20020 2449 13083 13087 19926 19926 0.049645597254311724 HYQIHRIRHFY 11 Unmodified _HYQIHRIRHFY_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6946411132812 3 523.944376 1568.8113 0.50819 0.00026626 2.772 0.0014524 3.2802 0.0017186 523.9470714024644 46.024 0.17486 46.024 45.898 46.073 0 5 4 2 0 0 0 0.96214 1 8636 8636 1.4551 0.12547 1 462400 20021 2449 13083 13087 19927 19927 0.049645597254311724 HYRIEAFRYWQ 11 Unmodified _HYRIEAFRYWQ_ 0 0 0 REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6810913085938 3 523.596753 1567.76843 NaN NaN NaN NaN NaN NaN NaN 130.16 1 130.16 129.66 130.66 0 0 0 0 0.23698 1 25721 25721 0.40827 0 1 + 20022 13277 13084 13088 19928 19928 0.007257448773543729 HYRQRFDGYL 10 Unmodified _HYRQRFDGYL_ 0 0 0 REV__MYH6|p.R725H|1|0.54|ENSG00000197616|chr14:23396812-23396812|C/T|missense_variant REV__MYH6|p.R725H|1|0.54|ENSG00000197616|chr14:23396812-23396812|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 451.74468994140625 3 452.226549 1353.65782 NaN NaN NaN NaN NaN NaN NaN 113.45 1 109.17 108.67 109.67 -4.2725 0 0 0 2.8426 1 21848 21848 1.9064 1.8626 1 + 20023 23896 13085 13089 19929 19929 -0.004864751108470955 HYWDFHPTT 9 Unmodified _HYWDFHPTT_ 0 0 0 SPI1|p.H56Tfs*130|1|0.75|ENSG00000066336|chr11:47360017-47360017|G/-|frameshift_variant SPI1|p.H56Tfs*130|1|0.75|ENSG00000066336|chr11:47360017-47360017|G/-|frameshift_variant SPI1|p.H56Tfs*130|1|0.75|ENSG00000066336|chr11:47360017-47360017|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2958374023438 2 602.26453 1202.51451 NaN NaN NaN NaN NaN NaN NaN 108.22 1 103.81 103.31 104.31 -4.4121 0 0 0 0.1963 1 20764 20764 0.073264 0 1 20024 25783 13086 13090 19930 19930 -0.07864902221967895 HYYKYKQQFIF 11 Unmodified _HYYKYKQQFIF_ 0 0 0 ENSG00000171435|ENST00000339824|KSR2;nc|ENSG00000171435|Q6VAB6-2|KSR2;ENST00000545002.1_1_12:117955650-118115004:-|nuORF ENSG00000171435|ENST00000339824|KSR2 ENSG00000171435|ENST00000339824|KSR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2675170898438 3 522.269755 1563.78744 NaN NaN NaN NaN NaN NaN NaN 20.18 1 18.855 18.355 19.355 -1.3251 0 0 0 0.22632 1 3119 3119 0.50596 0 1 20025 6143 13087 13091 19931 19931 0.02809281448389811 HYYKYKQQFIF 11 Unmodified _HYYKYKQQFIF_ 0 0 0 ENSG00000171435|ENST00000339824|KSR2;nc|ENSG00000171435|Q6VAB6-2|KSR2;ENST00000545002.1_1_12:117955650-118115004:-|nuORF ENSG00000171435|ENST00000339824|KSR2 ENSG00000171435|ENST00000339824|KSR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.271240234375 3 522.269755 1563.78744 NaN NaN NaN NaN NaN NaN NaN 25.243 1 23.709 23.209 24.209 -1.5342 0 0 0 0.22632 1 4139 4139 0.50596 0 1 20026 6143 13087 13091 19932 19932 0.02809281448389811 HYYYKFFDFLW 11 Unmodified _HYYYKFFDFLW_ 0 0 0 REV__ENST00000524082.5_1_5:167913503-167919924:+|nuORF REV__ENST00000524082.5_1_5:167913503-167919924:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77978515625 3 543.590605 1627.74999 NaN NaN NaN NaN NaN NaN NaN 173.88 1 169 168.5 169.5 -4.8845 0 0 0 0.22632 1 34534 34534 0 0 1 + 20027 22669 13088 13092 19933 19933 -0.038778098172087994 IAAFKRIRLR 10 Unmodified _IAAFKRIRLR_ 0 0 0 ENSG00000116882|ENST00000325945|HAO2;nc|ENSG00000116882|Q9NYQ3-2|HAO2 ENSG00000116882|ENST00000325945|HAO2 ENSG00000116882|ENST00000325945|HAO2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7637939453125 2 622.409124 1242.80369 NaN NaN NaN NaN NaN NaN NaN 109.26 1 109.26 108.76 109.76 0 0 0 0 0.22588 1 21482 21482 3.9444 2.1002 1 20028 2960 13089 13093 19934 19934 0.1920045219583244 IAAHPCVY 8 Unmodified _IAAHPCVY_ 0 0 0 REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1;REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2162780761719 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 79.965 1 79.965 79.465 80.465 0 0 0 0 0.21486 1 15563 15563 6.3541 1.1234 1 + 20029 25051;25464 13090 13094 19935 19935 -0.019854982088986617 IAAHPCVY 8 Unmodified _IAAHPCVY_ 0 0 0 REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1;REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21636962890625 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 102.97 1 102.97 102.47 103.47 0 0 0 0 0.21486 1 20229 20229 11.114 1.767 1 + 20030 25051;25464 13090 13094 19936 19936 -0.019854982088986617 IAANNEKY 8 Unmodified _IAANNEKY_ 0 0 0 REV__ENST00000461403.1_1_X:63557232-63569902:-|nuORF REV__ENST00000461403.1_1_X:63557232-63569902:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5397033691406 2 461.735074 921.455596 -0.10891 -5.0288E-05 0.46176 0.00021321 0.35285 0.00016292 461.735270927589 59.63 0.81705 59.63 59.284 60.102 0 40 22 3 0 0 0 0.66265 1 11487 11487 18.135 1.1927 1 7265400 + 20031 14816 13091 13095 19937 19937 -0.00827378516294175 IAANNEKY 8 Unmodified _IAANNEKY_ 0 0 0 REV__ENST00000461403.1_1_X:63557232-63569902:-|nuORF REV__ENST00000461403.1_1_X:63557232-63569902:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5257568359375 2 461.735074 921.455596 -0.011447 -5.2855E-06 0.39891 0.00018419 0.38746 0.00017891 461.73517576107133 62.407 0.94149 59.446 59.111 60.053 -2.9614 59 26 4 0 0 0 0.45067 1 11981 11981 30.225 3.3412 1 7440500 + 20032 14816 13091 13095 19938 19938 -0.00827378516294175 IAAVVFACL 9 Unmodified _IAAVVFACL_ 0 0 0 nc|ENSG00000168959|P41594-3|GRM5;GRM5|p.Q927Sfs*99|1|0.32|ENSG00000168959|chr11:88509453-88509453|C/-|frameshift_variant;nc|ENSG00000168959|P41594-2|GRM5;ENSG00000168959|ENST00000305447|GRM5 nc|ENSG00000168959|P41594-3|GRM5 nc|ENSG00000168959|P41594-3|GRM5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75982666015625 2 453.759507 905.50446 NaN NaN NaN NaN NaN NaN NaN 91.5 1 91.5 91 92 0 0 0 0 0.23508 1 17882 17882 9.3474 0 1 20033 5955 13092 13096 19939 19939 0.047928185191153716 IADDDEEEED 10 Unmodified _IADDDEEEED_ 0 0 0 REV__DRICH1|p.D205A|1|0.34|ENSG00000189269|chr22:23614142-23614142|T/G|missense_variant REV__DRICH1|p.D205A|1|0.34|ENSG00000189269|chr22:23614142-23614142|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2757568359375 2 590.21222 1178.40989 NaN NaN NaN NaN NaN NaN NaN 122.54 1 118.01 117.51 118.51 -4.5305 0 0 0 0.22588 1 23590 23590 3.9444 1.0552 1 + 20034 13748 13093 13097 19940 19940 -0.17218158070500067 IADIGNSVSV 10 Unmodified _IADIGNSVSV_ 0 0 0 tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1 tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1 tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2670593261719 2 487.761289 973.508025 0.094453 4.6071E-05 0.11524 5.6209E-05 0.20969 0.00010228 487.7623264963329 43.172 4.6741 40.414 40.021 44.695 -2.7581 407 133 6 0 0 0 0.51199 1 7905 7905 24.021 4.7636 1 4172199999.9999995 20035 26277 13094 13098 19941 19941 0.020211598266769215 IADKLKKYKP 10 Unmodified _IADKLKKYKP_ 0 0 0 REV__nc|ENSG00000128641|O43795-2|MYO1B REV__nc|ENSG00000128641|O43795-2|MYO1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.27880859375 2 602.376623 1202.73869 NaN NaN NaN NaN NaN NaN NaN 44.762 1 41.972 41.472 42.472 -2.79 0 0 0 2.8426 1 8418 8418 0.013265 0 1 + 20036 15931 13095 13099 19942 19942 0.1454341287931129 IADKPMTQY 9 Unmodified _IADKPMTQY_ 0 0 0 ENSG00000119953|ENST00000369603|SMNDC1 ENSG00000119953|ENST00000369603|SMNDC1 ENSG00000119953|ENST00000369603|SMNDC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2845458984375 2 533.765517 1065.51648 0.45112 0.00024079 -0.53132 -0.0002836 -0.080192 -4.2804E-05 533.7651974397992 46.255 0.45139 46.255 46.073 46.525 0 23 12 3 0 0 0 0.57311 1 8716 8716 47.594 15.289 1 1218200 20037 3109 13096 13100 19943 19943 -0.013656095283522518 IADKPMTQY 9 Unmodified _IADKPMTQY_ 0 0 0 ENSG00000119953|ENST00000369603|SMNDC1 ENSG00000119953|ENST00000369603|SMNDC1 ENSG00000119953|ENST00000369603|SMNDC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 533.765517 1065.51648 -0.025202 -1.3452E-05 0.049947 2.666E-05 0.024745 1.3208E-05 533.7655159060237 49.344 0.52792 46.463 46.201 46.729 -2.8811 0.075327 0.00026501 NaN 47.594 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1547500 20038 3109 13096 13100 -0.013656095283522518 IADKWSPI 8 Unmodified _IADKWSPI_ 0 0 0 REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1 REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2588806152344 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 133.8 1 128.99 128.49 129.49 -4.8175 0 0 0 0.21181 1 25755 25755 15.768 4.6538 1 + 20039 24963 13097 13101 19944 19944 0.034706863857991266 IADMGHLKY 9 Oxidation (M) _IADM(Oxidation (M))GHLKY_ IADM(1)GHLKY IADM(76)GHLKY 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2686767578125 2 532.265684 1062.51682 0.16207 8.6263E-05 0.10281 5.4723E-05 0.26488 0.00014099 532.265799459101 37.381 0.72674 37.381 37.06 37.787 0 68 20 5 0 0 0 0.039785 2 6936 6885;6936 75.761 20.987 1 63342000 20040 3751 13098 13102 19945;19946 19946 60 -0.011941898085069624 IADMGHLKY 9 Oxidation (M) _IADM(Oxidation (M))GHLKY_ IADM(1)GHLKY IADM(60)GHLKY 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2685546875 2 532.265684 1062.51682 0.18733 9.9712E-05 -0.3258 -0.00017341 -0.13846 -7.3698E-05 532.2655440042051 38.304 1.0662 38.304 37.858 38.924 0 86 29 4 0 0 0 0.086396 1 7130 7130 60.074 14.053 1 42597000 20041 3751 13098 13102 19947 19947 60 -0.011941898085069624 IADMGHLKY 9 Oxidation (M) _IADM(Oxidation (M))GHLKY_ IADM(1)GHLKY IADM(79)GHLKY 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2681884765625 2 532.265684 1062.51682 -0.19574 -0.00010419 0.10478 5.5771E-05 -0.090962 -4.8416E-05 532.2657921388625 40.059 0.74352 37.51 37.106 37.85 -2.5491 66 20 5 0 0 0 0.033473 2 7486 7436;7486 78.728 32.707 1 64801000 20042 3751 13098 13102 19948;19949 19949 60 -0.011941898085069624 IADMGHLKY 9 Oxidation (M) _IADM(Oxidation (M))GHLKY_ IADM(1)GHLKY IADM(69)GHLKY 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2689819335938 2 532.265684 1062.51682 -0.14805 -7.8803E-05 0.21589 0.00011491 0.067832 3.6105E-05 532.2658354315823 41.078 1.0451 38.443 38.007 39.052 -2.6348 75 29 4 0 0 0 0.053942 2 7624 7624;7671 69.105 26.499 1 42312000 20043 3751 13098 13102 19950;19951 19950 60 -0.011941898085069624 IADMGHLKY 9 Oxidation (M) _IADM(Oxidation (M))GHLKY_ IADM(1)GHLKY IADM(64)GHLKY 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2683715820312 2 532.265684 1062.51682 0.37359 0.00019885 -0.261 -0.00013892 0.11259 5.9929E-05 532.2657162106714 39.916 0.84745 37.376 36.933 37.78 -2.5398 75 23 5 0 0 0 0.072372 1 7149 7149 63.961 9.187 1 54021000 20044 3751 13098 13102 19952 19952 60 -0.011941898085069624 IADMGHLKY 9 Oxidation (M) _IADM(Oxidation (M))GHLKY_ IADM(1)GHLKY IADM(76)GHLKY 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2681274414062 2 532.265684 1062.51682 0.17237 9.1747E-05 -0.15828 -8.4249E-05 0.014088 7.4984E-06 532.2657177944152 39.824 0.87984 37.419 36.925 37.805 -2.4049 72 22 5 0 0 0 0.039785 2 7118 7118;7163 75.761 20.987 1 57524000 20045 3751 13098 13102 19953;19954 19953 60 -0.011941898085069624 IADMGHLKY 9 Oxidation (M) _IADM(Oxidation (M))GHLKY_ IADM(1)GHLKY IADM(58)GHLKY 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2683715820312 2 532.265684 1062.51682 0.1269 6.7543E-05 -0.13004 -6.9213E-05 -0.0031378 -1.6701E-06 532.2656469099614 40.855 1.1604 38.366 37.936 39.096 -2.4896 98 32 5 0 0 0 0.094316 1 7327 7327 57.722 11.701 1 44382000 20046 3751 13098 13102 19955 19955 60 -0.011941898085069624 IADMGHLKY 9 Unmodified _IADMGHLKY_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6876220703125 2 524.268227 1046.5219 -0.068689 -3.6011E-05 -0.25931 -0.00013595 -0.328 -0.00017196 524.2683843953804 69.653 1.5189 69.653 69.002 70.521 0 147 42 5 0 0 0 0.0013221 1 13501 13501 139.14 26.545 1 211600000 20047 3751 13098 13103 19956 19956 0.000501140541246059 IADMGHLKY 9 Unmodified _IADMGHLKY_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6897583007812 2 524.268227 1046.5219 -0.27193 -0.00014257 0.13996 7.3378E-05 -0.13197 -6.9189E-05 524.2686584812974 72.938 1.3982 69.628 69.025 70.423 -3.3107 153 38 6 0 0 0 0.025254 1 14206 14206 107.19 18.283 1 204040000 20048 3751 13098 13103 19957 19957 0.000501140541246059 IADMGHLKY 9 Unmodified _IADMGHLKY_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6884155273438 2 524.268227 1046.5219 -0.24053 -0.0001261 -0.095789 -5.0219E-05 -0.33632 -0.00017632 524.2685256664971 73.115 1.6261 69.488 68.873 70.499 -3.6275 158 45 5 0 0 0 0.01155 1 13876 13876 126.57 33.744 1 174210000 20049 3751 13098 13103 19958 19958 0.000501140541246059 IADMGHLKY 9 Unmodified _IADMGHLKY_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6890258789062 2 524.268227 1046.5219 0.4215 0.00022098 -0.53299 -0.00027943 -0.11149 -5.8451E-05 524.2682512487659 73.111 1.7475 69.572 68.881 70.628 -3.5385 162 49 5 0 0 0 0.0029765 1 13863 13863 122.18 21.808 1 201200000 20050 3751 13098 13103 19959 19959 0.000501140541246059 IADVKNGG 8 Unmodified _IADVKNGG_ 0 0 0 REV__ENSG00000170382|ENST00000367177|LRRN2 REV__ENSG00000170382|ENST00000367177|LRRN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.1873779296875 2 387.211235 772.407917 NaN NaN NaN NaN NaN NaN NaN 53.607 1 50.511 50.011 51.011 -3.0954 0 0 0 0.21486 1 9908 9908 5.7604 0.52976 1 + 20051 18159 13099 13104 19960 19960 0.012609672835310448 IAEENKNL 8 Unmodified _IAEENKNL_ 0 0 0 TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.249267578125 2 465.748182 929.481811 -0.29659 -0.00013813 1.0347 0.0004819 0.73809 0.00034376 465.7485551885216 104.97 0.42223 100.75 100.51 100.93 -4.2183 16 11 2 0 0 0 0.72565 1 20613 20613 26.884 6.43 1 1215000 20052 7343 13100 13105 19961 19961 0.014248906551870277 IAEENKNL 8 Unmodified _IAEENKNL_ 0 0 0 TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.748182 929.481811 0.075804 3.5306E-05 0.43567 0.00020291 0.51147 0.00023822 465.7482290127296 105.19 0.59102 100.81 100.49 101.08 -4.3764 0.02788 -0.00028063 NaN 26.884 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 918750 20053 7343 13100 13105 0.014248906551870277 IAEHQRKY 8 Unmodified _IAEHQRKY_ 0 0 0 nc|ENSG00000232150|Q8IZP2|ST13P4 nc|ENSG00000232150|Q8IZP2|ST13P4 nc|ENSG00000232150|Q8IZP2|ST13P4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2708740234375 2 522.78289 1043.55123 -0.29057 -0.0001519 -0.3872 -0.00020242 -0.67776 -0.00035432 522.7825941165505 74.239 0.66616 70.875 70.605 71.272 -3.3643 23 18 2 0 0 0 0.97966 1 14454 14454 16.942 3.3274 1 4924500 20054 12607 13101 13106 19962 19962 0.031193943946163927 IAEKETLEY 9 Unmodified _IAEKETLEY_ 0 0 0 nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;DNAH14|p.K396Rfs*4|1|0.25|ENSG00000185842|chr1:225023636-225023637|AA/-|frameshift_variant;nc|ENSG00000185842|Q0VDD8-2|DNAH14;DNAH14|p.K466Rfs*42|2|0.29|ENSG00000185842|chr1:225023841-225023841|A/-|frameshift_variant;DNAH14|p.V536Yfs*11|1|0.03|ENSG00000185842|chr1:225042893-225042894|-/ATAC|frameshift_variant;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8|DNAH14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7838745117188 2 548.282054 1094.54956 0.022942 1.2579E-05 0.34189 0.00018745 0.36483 0.00020003 548.2821957159972 60.011 0.66814 60.011 59.612 60.28 0 58 18 4 0 0 0 0.027537 1 11493 11493 110.55 42.472 1 28748000 20055 7016;12518 13102 13107 19963 19963 0.006062957953417936 IAEKETLEY 9 Unmodified _IAEKETLEY_ 0 0 0 nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;DNAH14|p.K396Rfs*4|1|0.25|ENSG00000185842|chr1:225023636-225023637|AA/-|frameshift_variant;nc|ENSG00000185842|Q0VDD8-2|DNAH14;DNAH14|p.K466Rfs*42|2|0.29|ENSG00000185842|chr1:225023841-225023841|A/-|frameshift_variant;DNAH14|p.V536Yfs*11|1|0.03|ENSG00000185842|chr1:225042893-225042894|-/ATAC|frameshift_variant;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8|DNAH14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7852783203125 2 548.282054 1094.54956 0.24822 0.00013609 0.56079 0.00030747 0.80901 0.00044357 548.2825622326917 63.067 1.1986 60.07 59.391 60.59 -2.9975 84 34 4 0 0 0 0.027537 1 12138 12138 110.55 46.592 1 23020000 20056 7016;12518 13102 13107 19964 19964 0.006062957953417936 IAEKETLEY 9 Unmodified _IAEKETLEY_ 0 0 0 nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;DNAH14|p.K396Rfs*4|1|0.25|ENSG00000185842|chr1:225023636-225023637|AA/-|frameshift_variant;nc|ENSG00000185842|Q0VDD8-2|DNAH14;DNAH14|p.K466Rfs*42|2|0.29|ENSG00000185842|chr1:225023841-225023841|A/-|frameshift_variant;DNAH14|p.V536Yfs*11|1|0.03|ENSG00000185842|chr1:225042893-225042894|-/ATAC|frameshift_variant;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8|DNAH14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7799682617188 2 548.282054 1094.54956 0.19699 0.000108 0.09675 5.3046E-05 0.29374 0.00016105 548.2820673210426 63.53 0.70969 60.114 59.644 60.354 -3.4158 61 19 4 0 0 0 0.007198 2 11835 11827;11835 110.55 46.592 1 21226000 20057 7016;12518 13102 13107 19965;19966 19966 0.006062957953417936 IAEKETLEY 9 Unmodified _IAEKETLEY_ 0 0 0 nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;DNAH14|p.K396Rfs*4|1|0.25|ENSG00000185842|chr1:225023636-225023637|AA/-|frameshift_variant;nc|ENSG00000185842|Q0VDD8-2|DNAH14;DNAH14|p.K466Rfs*42|2|0.29|ENSG00000185842|chr1:225023841-225023841|A/-|frameshift_variant;DNAH14|p.V536Yfs*11|1|0.03|ENSG00000185842|chr1:225042893-225042894|-/ATAC|frameshift_variant;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8|DNAH14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7850952148438 2 548.282054 1094.54956 0.32497 0.00017817 0.46521 0.00025507 0.79018 0.00043324 548.2825412549901 63.343 0.96181 60.086 59.644 60.606 -3.2567 70 27 5 0 0 0 0.027537 1 11915 11915 110.55 46.592 1 20023000 20058 7016;12518 13102 13107 19967 19967 0.006062957953417936 IAELPVNTA 9 Unmodified _IAELPVNTA_ 0 0 0 REV__ENSG00000158417|ENST00000289371|EIF5B REV__ENSG00000158417|ENST00000289371|EIF5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24871826171875 2 464.260925 926.507297 -0.085392 -3.9644E-05 -0.24256 -0.00011261 -0.32795 -0.00015225 464.26083683202097 66.594 1.2919 63.486 62.991 64.283 -3.1086 126 36 5 0 0 0 0.54354 1 12826 12826 16.942 0 1 341330000 + 20059 13799 13103 13108 19968 19968 0.04110365177598396 IAELQQFL 8 Unmodified _IAELQQFL_ 0 0 0 PIGO|p.P614Hfs*9|1|0.41|ENSG00000165282|chr9:35092046-35092046|G/-|frameshift_variant;nc|ENSG00000165282|Q8TEQ8-2|PIGO;PIGO|p.R731Vfs*17|3|0.41|ENSG00000165282|chr9:35091696-35091696|G/-|frameshift_variant;ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF PIGO|p.P614Hfs*9|1|0.41|ENSG00000165282|chr9:35092046-35092046|G/-|frameshift_variant PIGO|p.P614Hfs*9|1|0.41|ENSG00000165282|chr9:35092046-35092046|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2539367675781 2 481.271293 960.528032 NaN NaN NaN NaN NaN NaN NaN 104.87 1 100.65 100.15 101.15 -4.2183 0 0 0 0.21039 1 20631 20631 16.942 1.0951 1 20060 5616 13104 13109 19969 19969 0.04618955557270965 IAESQLRY 8 Unmodified _IAESQLRY_ 0 0 0 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26385498046875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 58.972 1 58.972 58.472 59.472 0 0 0 0 0.21486 1 11294 11294 12.532 0.89125 1 20061 4694 13105 13110 19970 19970 0.023328834091330464 IAESVLNK 8 Unmodified _IAESVLNK_ 0 0 0 REV__ENSG00000136930|ENST00000259457|PSMB7 REV__ENSG00000136930|ENST00000259457|PSMB7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2359924316406 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 115.79 1 111.43 110.93 111.93 -4.3585 0 0 0 0.21486 1 22290 22290 5.7604 0 1 + 20062 16363 13106 13111 19971 19971 0.05538382523195651 IAESVLNK 8 Unmodified _IAESVLNK_ 0 0 0 REV__ENSG00000136930|ENST00000259457|PSMB7 REV__ENSG00000136930|ENST00000259457|PSMB7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2165832519531 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 117.56 1 113.15 112.65 113.65 -4.4088 0 0 0 0.21486 1 22626 22626 5.7604 0 1 + 20063 16363 13106 13111 19972 19972 0.05538382523195651 IAFLKIRI 8 Unmodified _IAFLKIRI_ 0 0 0 REV__ENST00000418019.5_1_2:219425591-219427488:-|nuORF REV__ENST00000418019.5_1_2:219425591-219427488:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.1993713378906 3 325.223417 972.648422 NaN NaN NaN NaN NaN NaN NaN 80.056 1 76.546 76.046 77.046 -3.5102 0 0 0 0.21486 1 15634 15634 0.45834 0 1 + 20064 21479 13107 13112 19973 19973 0.16100408341537786 IAGEFKIAA 9 Unmodified _IAGEFKIAA_ 0 0 0 REV__nc|ENSG00000159131|P22102-2|GART REV__nc|ENSG00000159131|P22102-2|GART MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2414245605469 2 460.26601 918.517468 -0.1299 -5.979E-05 0.53454 0.00024603 0.40463 0.00018624 460.26614769582625 91.345 1.0601 87.42 86.897 87.957 -3.9251 84 30 4 0 0 0 0.18739 1 17929 17929 44.407 0 1 22528000 + 20065 17358 13108 13113 19974 19974 0.054949729028408 IAGFKSPKD 9 Unmodified _IAGFKSPKD_ 0 0 0 tr|U7SWI6|U7SWI6_FUSNUSulfitereductase,subunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01056PE=4SV=1 tr|U7SWI6|U7SWI6_FUSNUSulfitereductase,subunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01056PE=4SV=1 tr|U7SWI6|U7SWI6_FUSNUSulfitereductase,subunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01056PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76953125 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 97.54 1 93.621 93.121 94.121 -3.9194 0 0 0 0.23508 1 18717 18717 10.824 2.2306 1 20066 26248 13109 13114 19975 19975 0.040980714145121055 IAGGDIKNAV 10 Unmodified _IAGGDIKNAV_ 0 0 0 REV__ENST00000494909.5_1_2:114398284-114398608:+|nuORF REV__ENST00000494909.5_1_2:114398284-114398608:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7286682128906 2 479.271824 956.529095 0.28389 0.00013606 -0.20541 -9.8446E-05 0.078487 3.7616E-05 479.27166786983486 64.968 0.47839 61.685 61.281 61.76 -3.2832 23 13 2 0 0 0 0.52179 1 12174 12174 32.786 3.7041 1 1942900 + 20067 22372 13110 13115 19976 19976 0.04909169926179402 IAGGVKRV 8 Unmodified _IAGGVKRV_ 0 0 0 CON__P07744 CON__P07744 CON__P07744 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.2613220214844 2 400.261062 798.507572 NaN NaN NaN NaN NaN NaN NaN 85.567 1 81.903 81.403 82.403 -3.6641 0 0 0 0.21486 1 16729 16729 2.8892 0 1 + 20068 660 13111 13116 19977 19977 0.10025829688140675 IAGIVICAF 9 Unmodified _IAGIVICAF_ 0 0 0 nc|ENSG00000121989|P27037-2|ACVR2A;ACVR2A|p.K437Rfs*5|12|0.58|ENSG00000121989|chr2:147926117-147926117|A/-|frameshift_variant;ACVR2A|p.R438Efs*19|1|0.34|ENSG00000121989|chr2:147926116-147926117|-/A|frameshift_variant;ACVR2A|p.G473Dfs*3|1|0.76|ENSG00000121989|chr2:147927149-147927149|G/-|frameshift_variant;ENSG00000121989|ENST00000241416|ACVR2A nc|ENSG00000121989|P27037-2|ACVR2A nc|ENSG00000121989|P27037-2|ACVR2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7580871582031 2 453.759507 905.50446 NaN NaN NaN NaN NaN NaN NaN 113.64 1 113.64 113.14 114.14 0 0 0 0 0.23508 1 22345 22345 5.2307 2.3415 1 20069 49 13112 13117 19978 19978 0.04792818519104003 IAGKQKEIK 9 Unmodified _IAGKQKEIK_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;CNTRL|p.N1300Tfs*22|1|0.32|ENSG00000119397|chr9:121150412-121150412|C/-|frameshift_variant;CNTRL|p.K1802Sfs*9|2|0.21|ENSG00000119397|chr9:121162247-121162247|A/-|frameshift_variant;CNTRL|p.K957Rfs*16|1|0.17|ENSG00000119397|chr9:121142265-121142265|A/-|frameshift_variant nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.5502014160156 3 338.88172 1013.62333 -0.36313 -0.00012306 -0.092435 -3.1325E-05 -0.45557 -0.00015438 338.88172026596493 88.544 0.46896 84.751 84.552 85.021 -3.7926 16 12 2 0 0 0 0.5464 1 17334 17334 0.029283 0 1 1229800 20070 3073 13113 13118 19979 19979 0.11706308748318861 IAGPGLPDL 9 Unmodified _IAGPGLPDL_ 0 0 0 nc|ENSG00000284922|Q8WZ04-2|TOMT;nc|ENSG00000284922|Q8WZ04|TOMT nc|ENSG00000284922|Q8WZ04-2|TOMT nc|ENSG00000284922|Q8WZ04-2|TOMT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.7471923828125 2 426.744911 851.475269 0.13123 5.6001E-05 0.34218 0.00014602 0.4734 0.00020202 426.7447806149056 128.09 0.91299 123.27 122.82 123.73 -4.817 54 25 3 0 0 0 0.24143 1 24627 24627 4.477 1.5944 1 6047800 20071 12649 13114 13119 19980 19980 0.04358997494466621 IAGPGLPDL 9 Unmodified _IAGPGLPDL_ 0 0 0 nc|ENSG00000284922|Q8WZ04-2|TOMT;nc|ENSG00000284922|Q8WZ04|TOMT nc|ENSG00000284922|Q8WZ04-2|TOMT nc|ENSG00000284922|Q8WZ04-2|TOMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 426.744911 851.475269 0.10551 4.5025E-05 -0.14108 -6.0206E-05 -0.035573 -1.518E-05 426.74480127276945 123.14 0.81277 123.14 122.82 123.63 0 -0.11995 -0.00032491 NaN 4.477 38 22 2 NaN NaN NaN NaN 0 NaN NaN 0 3741500 20072 12649 13114 13119 0.04358997494466621 IAGPGLPDL 9 Unmodified _IAGPGLPDL_ 0 0 0 nc|ENSG00000284922|Q8WZ04-2|TOMT;nc|ENSG00000284922|Q8WZ04|TOMT nc|ENSG00000284922|Q8WZ04-2|TOMT nc|ENSG00000284922|Q8WZ04-2|TOMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 426.744911 851.475269 -0.083497 -3.5632E-05 0.58034 0.00024766 0.49685 0.00021203 426.744858347783 127.95 0.85011 123.33 122.81 123.66 -4.6172 0.072608 0.00029082 NaN 4.477 55 23 3 NaN NaN NaN NaN 0 NaN NaN 0 6467700 20073 12649 13114 13119 0.04358997494466621 IAGPGLPDL 9 Unmodified _IAGPGLPDL_ 0 0 0 nc|ENSG00000284922|Q8WZ04-2|TOMT;nc|ENSG00000284922|Q8WZ04|TOMT nc|ENSG00000284922|Q8WZ04-2|TOMT nc|ENSG00000284922|Q8WZ04-2|TOMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 426.744911 851.475269 -0.10624 -4.5336E-05 0.50795 0.00021677 0.40171 0.00017143 426.7448833362357 128.03 0.87443 123.29 122.89 123.76 -4.7408 0.035608 0.00022903 NaN 4.477 51 24 3 NaN NaN NaN NaN 0 NaN NaN 0 4044200 20074 12649 13114 13119 0.04358997494466621 IAGRKLVIVL 10 Unmodified _IAGRKLVIVL_ 0 0 0 REV__ENSG00000006071|ENST00000389817|ABCC8 REV__ENSG00000006071|ENST00000389817|ABCC8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2665405273438 2 541.376426 1080.7383 NaN NaN NaN NaN NaN NaN NaN 118.47 1 118.47 117.97 118.97 0 0 0 0 2.8426 1 23336 23336 0.69767 0 1 + 20075 13868 13115 13120 19981 19981 0.20116037950128884 IAGTPFEKG 9 Unmodified _IAGTPFEKG_ 0 0 0 REV__ENSG00000251692|ENST00000447419|PTX4 REV__ENSG00000251692|ENST00000447419|PTX4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2489929199219 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 93.269 1 89.425 88.925 89.925 -3.844 0 0 0 0.21848 1 17881 17881 18.135 2.2878 1 + 20076 19832 13116 13121 19982 19982 0.018580960061512997 IAHLVRLLLIV 11 Unmodified _IAHLVRLLLIV_ 0 0 0 REV__TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant REV__TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7764892578125 2 630.431733 1258.84891 1.0167 0.00064093 0.81297 0.00051252 1.8296 0.0011535 630.9340147053456 144.45 0.17523 139.78 139.68 139.85 -4.6694 6 4 2 0 0 0 0.96156 1 28619 28619 0.35063 0 1 3317900 + 20077 17158 13117 13122 19983 19983 0.22984257938355768 IAHNSAFF 8 Unmodified _IAHNSAFF_ 0 0 0 ENST00000525959.5_1_11:76157982-76169223:+|nuORF ENST00000525959.5_1_11:76157982-76169223:+|nuORF ENST00000525959.5_1_11:76157982-76169223:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7673034667969 2 453.727052 905.439552 NaN NaN NaN NaN NaN NaN NaN 102.58 1 98.39 97.89 98.89 -4.1861 0 0 0 0.21486 1 20162 20162 10.183 0 1 20078 10906 13118 13123 19984 19984 -0.01695039962521605 IAHQVETIQI 10 Unmodified _IAHQVETIQI_ 0 0 0 REV__ENSG00000122432|ENST00000699524|SPATA1 REV__ENSG00000122432|ENST00000699524|SPATA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3236083984375 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 139.49 1 134.64 134.14 135.14 -4.8492 0 0 0 0.22588 1 26891 26891 12.241 0 1 + 20079 15688 13119 13124 19985 19985 0.06533086051808823 IAHTSPFESY 10 Unmodified _IAHTSPFESY_ 0 0 0 sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2 sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2 sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3197021484375 2 576.272021 1150.52949 NaN NaN NaN NaN NaN NaN NaN 129.18 1 129.18 128.68 129.68 0 0 0 0 2.8426 1 25517 25517 3.5927 3.4649 1 20080 25755 13120 13125 19986 19986 -0.03975455144609441 IAHVLKRKL 9 Unmodified _IAHVLKRKL_ 0 0 0 REV__ENST00000479213.1_1_6:131914123-131917288:-|nuORF REV__ENST00000479213.1_1_6:131914123-131917288:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 539.4048461914062 2 539.366393 1076.71823 NaN NaN NaN NaN NaN NaN NaN 172.74 1 167.84 167.34 168.34 -4.8977 0 0 0 0.19624 1 34272 34272 0 0 1 + 20081 15290 13121 13126 19987 19987 0.18294287010166954 IAIAKKIVELT 11 Unmodified _IAIAKKIVELT_ 0 0 0 tr|U7T2J4|U7T2J4_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00725PE=3SV=1 tr|U7T2J4|U7T2J4_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00725PE=3SV=1 tr|U7T2J4|U7T2J4_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00725PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 400.36187744140625 3 400.26383 1197.76966 NaN NaN NaN NaN NaN NaN NaN 177.77 1 172.87 172.37 173.37 -4.9088 0 0 0 0.23698 1 35456 35456 0.50596 0 1 20082 26367 13122 13127 19988 19988 0.17868566193556035 IAILHASCT 9 Unmodified _IAILHASCT_ 0 0 0 REV__ENSG00000197309|ENST00000641351|OR10D3 REV__ENSG00000197309|ENST00000641351|OR10D3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1679992675781 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 165.63 1 160.84 160.34 161.34 -4.7898 0 0 0 0.19623 1 33189 33189 0.073264 0 1 + 20083 19321 13123 13128 19989 19989 0.018144425083505666 IAILLMKGG 9 Unmodified _IAILLMKGG_ 0 0 0 REV__TEK|p.N809Tfs*21|1|0.22|ENSG00000120156|chr9:27206639-27206639|A/-|frameshift_variant REV__TEK|p.N809Tfs*21|1|0.22|ENSG00000120156|chr9:27206639-27206639|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2319030761719 2 458.288431 914.562309 NaN NaN NaN NaN NaN NaN NaN 62.677 1 62.677 62.177 63.177 0 0 0 0 0.19638 1 12039 12039 2.6312 2.623 1 + 20084 15612 13124 13129 19990 19990 0.10161080444538584 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2452697753906 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 57.863 1 57.863 57.363 58.363 0 0 0 0 0.22588 1 11067 11067 0.15932 0.01943 1 20085 4975 13125 13130 19991 19991 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2465515136719 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 89.453 1 89.453 88.953 89.953 0 0 0 0 2.8426 1 17470 17470 0 0 1 20086 4975 13125 13130 19992 19992 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2400207519531 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 101.52 1 101.52 101.02 102.02 0 0 0 0 2.8426 1 19929 19929 0 0 1 20087 4975 13125 13130 19993 19993 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2537536621094 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 108.29 1 108.29 107.79 108.79 0 0 0 0 0.22588 1 21295 21295 0.15932 0.01943 1 20088 4975 13125 13130 19994 19994 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2533264160156 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 128.6 1 128.6 128.1 129.1 0 0 0 0 0.22588 1 25398 25398 0.15932 0.064481 1 20089 4975 13125 13130 19995 19995 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2534484863281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 128.99 1 128.99 128.49 129.49 0 0 0 0 0.22588 1 25476 25476 0.15932 0.064481 1 20090 4975 13125 13130 19996 19996 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.23529052734375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 138.09 1 138.09 137.59 138.59 0 0 0 0 0.22588 1 27407 27407 0.15932 0.01943 1 20091 4975 13125 13130 19997 19997 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2522277832031 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 150.92 1 150.92 150.42 151.42 0 0 0 0 0.22588 1 30222 30222 0.15932 0.01943 1 20092 4975 13125 13130 19998 19998 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.236328125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 153.63 1 153.63 153.13 154.13 0 0 0 0 0.22588 1 30785 30785 0.15932 0.01943 1 20093 4975 13125 13130 19999 19999 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25225830078125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 153.7 1 153.7 153.2 154.2 0 0 0 0 0.22588 1 30800 30800 0.15932 0.01943 1 20094 4975 13125 13130 20000 20000 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2425537109375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 45.976 1 43.135 42.635 43.635 -2.8409 0 0 0 2.8426 1 8671 8671 0 0 1 20095 4975 13125 13130 20001 20001 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2420654296875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 53.226 1 50.342 49.842 50.842 -2.8837 0 0 0 2.8426 1 10138 10138 0 0 1 20096 4975 13125 13130 20002 20002 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2414855957031 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 58.425 1 55.515 55.015 56.015 -2.9105 0 0 0 2.8426 1 11221 11221 0.69767 0.65388 1 20097 4975 13125 13130 20003 20003 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2366027832031 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 99.547 1 95.414 94.914 95.914 -4.1326 0 0 0 0.22588 1 19557 19557 1.7423 1.1154 1 20098 4975 13125 13130 20004 20004 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2560119628906 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 149.11 1 144.4 143.9 144.9 -4.7095 0 0 0 0.22588 1 29613 29613 0.15932 0.064481 1 20099 4975 13125 13130 20005 20005 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25115966796875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 61.017 1 57.647 57.147 58.147 -3.3694 0 0 0 2.8426 1 11370 11370 0 0 1 20100 4975 13125 13130 20006 20006 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2474060058594 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 99.828 1 95.531 95.031 96.031 -4.297 0 0 0 2.8426 1 19086 19086 0 0 1 20101 4975 13125 13130 20007 20007 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2474060058594 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 99.852 1 95.555 95.055 96.055 -4.297 0 0 0 0.22588 1 19089 19089 0.69767 0.07084 1 20102 4975 13125 13130 20008 20008 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2354736328125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 126.09 1 121.32 120.82 121.82 -4.7681 0 0 0 0.22588 1 24202 24202 0.77653 0.27058 1 20103 4975 13125 13130 20009 20009 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24609375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 128.09 1 123.27 122.77 123.77 -4.817 0 0 0 2.8426 1 24588 24588 0 0 1 20104 4975 13125 13130 20010 20010 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.251953125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 157.2 1 151.91 151.41 152.41 -5.2854 0 0 0 0.22588 1 30502 30502 0.15932 0.01943 1 20105 4975 13125 13130 20011 20011 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2365417480469 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 160.36 1 155.13 154.63 155.63 -5.2299 0 0 0 0.22588 1 31135 31135 0.15932 0.064481 1 20106 4975 13125 13130 20012 20012 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2523193359375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 160.57 1 155.34 154.84 155.84 -5.2299 0 0 0 0.22588 1 31180 31180 0.15932 0.064481 1 20107 4975 13125 13130 20013 20013 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25079345703125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 66.662 1 63.335 62.835 63.835 -3.3268 0 0 0 2.8426 1 12553 12553 0 0 1 20108 4975 13125 13130 20014 20014 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23602294921875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 95.086 1 91.205 90.705 91.705 -3.881 0 0 0 0.22588 1 18244 18244 0.77653 0.078866 1 20109 4975 13125 13130 20015 20015 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23883056640625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 120.43 1 115.96 115.46 116.46 -4.467 0 0 0 0.22588 1 23188 23188 0.15932 0.064481 1 20110 4975 13125 13130 20016 20016 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2442321777344 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 130.54 1 125.76 125.26 126.26 -4.7725 0 0 0 2.8426 1 25123 25123 0 0 1 20111 4975 13125 13130 20017 20017 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2529602050781 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 141.03 1 136.16 135.66 136.66 -4.8678 0 0 0 0.22588 1 27208 27208 0.77653 0.27058 1 20112 4975 13125 13130 20018 20018 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.129150390625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 148.24 1 143.18 142.68 143.68 -5.0595 0 0 0 0.22588 1 28712 28712 0.15932 0.064481 1 20113 4975 13125 13130 20019 20019 0.21390489652821998 IAILLYKRKR 10 Unmodified _IAILLYKRKR_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2522888183594 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 150.94 1 145.76 145.26 146.26 -5.1759 0 0 0 0.22588 1 29257 29257 0.15932 0.01943 1 20114 4975 13125 13130 20020 20020 0.21390489652821998 IAILPLIKLPL 11 Unmodified _IAILPLIKLPL_ 0 0 0 REV__ENST00000514231.1_1_5:59092909-59284421:-|nuORF REV__ENST00000514231.1_1_5:59092909-59284421:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3011474609375 2 602.425585 1202.83662 NaN NaN NaN NaN NaN NaN NaN 129.48 1 129.48 128.98 129.98 0 0 0 0 0.23698 1 25578 25578 0 0 1 + 20115 22527 13126 13131 20021 20021 0.24331221475313214 IAILPLIKLPL 11 Unmodified _IAILPLIKLPL_ 0 0 0 REV__ENST00000514231.1_1_5:59092909-59284421:-|nuORF REV__ENST00000514231.1_1_5:59092909-59284421:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2916259765625 2 602.425585 1202.83662 NaN NaN NaN NaN NaN NaN NaN 167.99 1 167.99 167.49 168.49 0 0 0 0 0.22632 1 34364 34364 0 0 1 + 20116 22527 13126 13131 20022 20022 0.24331221475313214 IAILPLIKLPL 11 Unmodified _IAILPLIKLPL_ 0 0 0 REV__ENST00000514231.1_1_5:59092909-59284421:-|nuORF REV__ENST00000514231.1_1_5:59092909-59284421:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2823486328125 2 602.425585 1202.83662 NaN NaN NaN NaN NaN NaN NaN 82.42 1 78.547 78.047 79.047 -3.8736 0 0 0 0.23698 1 15660 15660 1.4819 1.4819 1 + 20117 22527 13126 13131 20023 20023 0.24331221475313214 IAILPLIKLPL 11 Unmodified _IAILPLIKLPL_ 0 0 0 REV__ENST00000514231.1_1_5:59092909-59284421:-|nuORF REV__ENST00000514231.1_1_5:59092909-59284421:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2752075195312 2 602.425585 1202.83662 NaN NaN NaN NaN NaN NaN NaN 99.544 1 95.587 95.087 96.087 -3.9564 0 0 0 0.23698 1 19113 19113 0 0 1 + 20118 22527 13126 13131 20024 20024 0.24331221475313214 IAINPSVP 8 Unmodified _IAINPSVP_ 0 0 0 nc|ENSG00000291014|Q9Y6N3|CLCA3P nc|ENSG00000291014|Q9Y6N3|CLCA3P nc|ENSG00000291014|Q9Y6N3|CLCA3P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.31475830078125 2 405.739628 809.464704 -0.37582 -0.00015249 0.6779 0.00027505 0.30208 0.00012256 405.7397229276698 104.4 0.68543 100.18 99.89 100.58 -4.2183 34 19 2 0 0 0 0.95284 1 20497 20497 20.871 0 1 2867200 20119 12663 13127 13132 20025 20025 0.05235014840036456 IAINPSVP 8 Unmodified _IAINPSVP_ 0 0 0 nc|ENSG00000291014|Q9Y6N3|CLCA3P nc|ENSG00000291014|Q9Y6N3|CLCA3P nc|ENSG00000291014|Q9Y6N3|CLCA3P MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 405.739628 809.464704 0.12982 5.2672E-05 0.047717 1.9361E-05 0.17753 7.2033E-05 405.739483672826 104.63 0.68712 100.28 100.04 100.73 -4.346 0.020535 -0.00025385 NaN 20.871 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3025700 20120 12663 13127 13132 0.05235014840036456 IAINPSVP 8 Unmodified _IAINPSVP_ 0 0 0 nc|ENSG00000291014|Q9Y6N3|CLCA3P nc|ENSG00000291014|Q9Y6N3|CLCA3P nc|ENSG00000291014|Q9Y6N3|CLCA3P MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 405.739628 809.464704 0.25065 0.0001017 0.32844 0.00013326 0.57909 0.00023496 405.7394188632319 104.38 0.77918 100.32 99.949 100.73 -4.0543 0.060437 -2.6052E-05 NaN 20.871 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2955700 20121 12663 13127 13132 0.05235014840036456 IAKFFGAEP 9 Unmodified _IAKFFGAEP_ 0 0 0 REV__nc|ENSG00000155313|Q9UHP3-1|USP25 REV__nc|ENSG00000155313|Q9UHP3-1|USP25 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 327.2007141113281 3 327.179766 978.517468 NaN NaN NaN NaN NaN NaN NaN 87.431 1 87.431 86.931 87.931 0 0 0 0 0.23508 1 17069 17069 2.7352 0 1 + 20122 17214 13128 13133 20026 20026 0.027349729028628644 IAKHSSCQ 8 Unmodified _IAKHSSCQ_ 0 0 0 REV__nc|ENSG00000221866|Q9HCM2-3|PLXNA4 REV__nc|ENSG00000221866|Q9HCM2-3|PLXNA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21612548828125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 94.419 1 90.575 90.075 91.075 -3.844 0 0 0 0.21452 1 18114 18114 13.508 2.3934 1 + 20123 24274 13129 13134 20027 20027 -0.023875877025943737 IAKKLSGG 8 Unmodified _IAKKLSGG_ 0 0 0 ENSG00000154263|ENST00000690296|ABCA10;nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant ENSG00000154263|ENST00000690296|ABCA10 ENSG00000154263|ENST00000690296|ABCA10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.2486572265625 2 387.247621 772.480688 NaN NaN NaN NaN NaN NaN NaN 77.584 1 73.925 73.425 74.425 -3.6588 0 0 0 0.21486 1 14774 14774 0.79363 0 1 20124 5004 13130 13135 20028 20028 0.08534721076966889 IAKNNYKE 8 Unmodified _IAKNNYKE_ 0 0 0 tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1 tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1 tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2641296386719 2 490.263999 978.513445 -0.21129 -0.00010359 0.20459 0.0001003 -0.0067015 -3.2855E-06 490.26408946685854 85.382 0.54646 81.671 81.323 81.87 -3.7117 40 15 4 0 0 0 8448 1 16264 16264 1.7423 1.0609 1 2708400 20125 26399 13131 13136 20029 20029 0.023328834091330464 IAKRAFGS 8 Unmodified _IAKRAFGS_ 0 0 0 ENST00000425394.6_1_12:56710785-56711043:-|nuORF ENST00000425394.6_1_12:56710785-56711043:-|nuORF ENST00000425394.6_1_12:56710785-56711043:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2432556152344 2 425.250695 848.486836 -0.09931 -4.2232E-05 0.63369 0.00026948 0.53438 0.00022724 425.25087954092646 60.953 0.41636 57.729 57.597 58.013 -3.2237 14 11 2 0 0 0 8448 1 11434 11434 0.62683 0 1 750560 20126 9715 13132 13137 20030 20030 0.056532393084808064 IALDEPTTNL 10 Unmodified _IALDEPTTNL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78955078125 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 128.43 1 123.69 123.19 124.19 -4.7408 0 0 0 2.8426 1 24712 24712 0.20733 0 1 20127 2747 13133 13138 20031 20031 0.021096981696246075 IALKKLMLK 9 Unmodified _IALKKLMLK_ 0 0 0 INA|p.I499Yfs*15|1|0.44|ENSG00000148798|chr10:103288659-103288659|A/-|frameshift_variant INA|p.I499Yfs*15|1|0.44|ENSG00000148798|chr10:103288659-103288659|A/-|frameshift_variant INA|p.I499Yfs*15|1|0.44|ENSG00000148798|chr10:103288659-103288659|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.25421142578125 3 353.243712 1056.70931 NaN NaN NaN NaN NaN NaN NaN 59.7 1 56.477 55.977 56.977 -3.2237 0 0 0 0.23508 1 11158 11158 0.26902 0 1 20128 11944 13134 13139 20032 20032 0.18322177329446276 IALNPGGRPKE 11 Unmodified _IALNPGGRPKE_ 0 0 0 nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;TNS1|p.P973Rfs*13|2|0.28|ENSG00000079308|chr2:217831535-217831535|G/-|frameshift_variant nc|ENSG00000079308|Q9HBL0-1|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3138427734375 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 145.74 1 140.63 140.13 141.13 -5.1108 0 0 0 0.22595 1 28171 28171 11.495 4.2055 1 20129 12238 13135 13140 20033 20033 0.0765590814596635 IALQNEIDQ 9 Unmodified _IALQNEIDQ_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2 REV__ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.262451171875 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 119.2 1 114.73 114.23 115.23 -4.467 0 0 0 0.19687 1 22943 22943 10.899 10.835 1 + 20130 14106 13136 13141 20034 20034 0.009925448553758542 IALVPPLKKIL 11 Unmodified _IALVPPLKKIL_ 0 0 0 REV__USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant REV__USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 402.2854919433594 3 402.284565 1203.83187 NaN NaN NaN NaN NaN NaN NaN 149.38 1 144.26 143.76 144.76 -5.1204 0 0 0 0.23698 1 28945 28945 0.094841 0 1 + 20131 15779 13137 13142 20035 20035 0.23810337332565723 IALYCLKEL 9 Unmodified _IALYCLKEL_ 0 0 0 SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant;ENSG00000177409|ENST00000318238|SAMD9L SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2813110351562 2 533.304278 1064.594 0.10533 5.617E-05 -1.5432 -0.00082301 -1.4379 -0.00076684 533.3037829374373 149.16 0.23714 149.16 148.96 149.2 0 9 6 2 0 0 0 0.40888 1 29867 29867 1.6919 0 1 3012100 20132 6509 13138 13143 20036 20036 0.06429028407842452 IALYWINS 8 Unmodified _IALYWINS_ 0 0 0 SCN7A|p.Y1475Ifs*11|1|0.43|ENSG00000136546|chr2:166406206-166406206|A/-|frameshift_variant;ENSG00000136546|ENST00000643258|SCN7A;ENST00000424326.5_1_2:167262092-167297919:-|nuORF SCN7A|p.Y1475Ifs*11|1|0.43|ENSG00000136546|chr2:166406206-166406206|A/-|frameshift_variant SCN7A|p.Y1475Ifs*11|1|0.43|ENSG00000136546|chr2:166406206-166406206|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2539367675781 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 104.42 1 104.42 103.92 104.92 0 0 0 0 0.21022 1 20520 20520 17.087 0.14425 1 20133 4022 13139 13144 20037 20037 0.027349729028514957 IAMAENAKE 9 Unmodified _IAMAENAKE_ 0 0 0 REV__ENSG00000152684|ENST00000274311|PELO REV__ENSG00000152684|ENST00000274311|PELO MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26678466796875 2 488.742042 975.469531 0.22755 0.00011121 -0.54377 -0.00026576 -0.31622 -0.00015455 488.74185850175337 24.597 0.98928 24.597 24.267 25.256 0 65 28 4 0 0 0 0.65387 1 4225 4225 9.3831 0 1 12771000 + 20134 17118 13140 13145 20038 20038 -0.019184690795100323 IAMAENAKE 9 Unmodified _IAMAENAKE_ 0 0 0 REV__ENSG00000152684|ENST00000274311|PELO REV__ENSG00000152684|ENST00000274311|PELO MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 488.742042 975.469531 0.22755 0.00011121 -0.54377 -0.00026576 -0.31622 -0.00015455 488.74185850175337 24.597 0.98928 24.597 24.267 25.256 0 0.093338 -0.00024283 NaN 9.3831 65 28 4 NaN NaN NaN NaN 0 NaN NaN 0 12771000 + 20135 17118 13140 13145 -0.019184690795100323 IAMAENAKE 9 Unmodified _IAMAENAKE_ 0 0 0 REV__ENSG00000152684|ENST00000274311|PELO REV__ENSG00000152684|ENST00000274311|PELO MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 488.742042 975.469531 0.2545 0.00012439 -0.44297 -0.0002165 -0.18846 -9.211E-05 488.74192354044345 26.131 0.96961 24.496 23.96 24.929 -1.6347 -0.0072954 -0.0001443 NaN 9.3831 65 27 4 NaN NaN NaN NaN 0 NaN NaN 0 10786000 + 20136 17118 13140 13145 -0.019184690795100323 IAMAENAKE 9 Unmodified _IAMAENAKE_ 0 0 0 REV__ENSG00000152684|ENST00000274311|PELO REV__ENSG00000152684|ENST00000274311|PELO MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 488.742042 975.469531 -0.24298 -0.00011875 0.090312 4.4139E-05 -0.15266 -7.4613E-05 488.74219723841725 26.34 0.95865 24.418 23.882 24.841 -1.9222 -0.086043 0.00037698 NaN 9.3831 69 27 4 NaN NaN NaN NaN 0 NaN NaN 0 7349400 + 20137 17118 13140 13145 -0.019184690795100323 IAMLLKLR 8 Unmodified _IAMLLKLR_ 0 0 0 SLC35G3|p.L85M|1|0.4|ENSG00000164729|chr17:35194055-35194055|G/T|missense_variant SLC35G3|p.L85M|1|0.4|ENSG00000164729|chr17:35194055-35194055|G/T|missense_variant SLC35G3|p.L85M|1|0.4|ENSG00000164729|chr17:35194055-35194055|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 479.0875244140625 2 479.317523 956.620493 NaN NaN NaN NaN NaN NaN NaN 140.71 1 136.06 135.56 136.56 -4.6493 0 0 0 0.21486 1 27782 27782 5.2307 0 1 20138 25681 13141 13146 20039 20039 0.14044762089815777 IANAADVGLA 10 Unmodified _IANAADVGLA_ 0 0 0 ENST00000492697.1_1_6:24532290-24533937:+|nuORF;ENST00000479394.1_1_6:24522946-24533937:+|nuORF;ENSG00000112294|ENST00000357578|ALDH5A1;nc|ENSG00000112294|P51649-2|ALDH5A1 ENST00000492697.1_1_6:24532290-24533937:+|nuORF ENST00000492697.1_1_6:24532290-24533937:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2308349609375 2 457.750724 913.486896 0.24221 0.00011087 -0.089377 -4.0913E-05 0.15283 6.9957E-05 457.75068691616906 20.223 1.3036 20.223 19.928 21.231 0 86 36 5 0 0 0 0.42762 1 3291 3291 10.151 1.7063 1 56179000 20139 2683 13142 13147 20040 20040 0.026691945177958587 IANGMLLWAKK 11 Unmodified _IANGMLLWAKK_ 0 0 0 REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.775146484375 2 622.862826 1243.7111 NaN NaN NaN NaN NaN NaN NaN 169.27 1 164.48 163.98 164.98 -4.7898 0 0 0 0.17652 1 34279 34279 10.016 7.2843 1 + 20140 14073 13143 13148 20041 20041 0.09899186347433897 IANVGSLQQGG 11 Unmodified _IANVGSLQQGG_ 0 0 0 REV__SLC2A5|p.G416Afs*13|1|0.29|ENSG00000142583|chr1:9037952-9037952|C/-|frameshift_variant REV__SLC2A5|p.G416Afs*13|1|0.29|ENSG00000142583|chr1:9037952-9037952|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2777709960938 2 522.277638 1042.54072 -0.16128 -8.4234E-05 0.57331 0.00029943 0.41203 0.00021519 522.2778186318227 63.377 0.43628 60.379 60.119 60.555 -2.9975 23 12 2 0 0 0 0.43824 1 12260 12260 29.841 3.5724 1 2799900 + 20141 16677 13144 13149 20042 20042 0.021153669495333816 IAPDSFVAHS 10 Unmodified _IAPDSFVAHS_ 0 0 0 REV__tr|U7T6H4|U7T6H4_FUSNURibose-phosphatepyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prsPE=3SV=1 REV__tr|U7T6H4|U7T6H4_FUSNURibose-phosphatepyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prsPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2630004882812 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 76.057 1 72.642 72.142 73.142 -3.4151 0 0 0 2.8426 1 14842 14842 0.063865 0 1 + 20142 25445 13145 13150 20043 20043 -0.011194204534831442 IAPFPPTVE 9 Unmodified _IAPFPPTVE_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1799011230469 3 324.179654 969.517133 NaN NaN NaN NaN NaN NaN NaN 69.375 1 66.195 65.695 66.695 -3.1796 0 0 0 0.23508 1 13489 13489 1.1933 0 1 + 20143 14799 13146 13151 20044 20044 0.031155531829995198 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2485046386719 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 45.356 1 45.356 44.856 45.856 0 0 0 0 0.2366 1 8523 8523 3.0723 2.3746 1 20144 5201 13147 13152 20045 20045 0.21390489652844735 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2550354003906 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 45.479 1 45.479 44.979 45.979 0 0 0 0 0.2366 1 8549 8549 3.0723 2.3746 1 20145 5201 13147 13152 20046 20046 0.21390489652844735 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2375793457031 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 45.758 1 45.758 45.258 46.258 0 0 0 0 0.2366 1 8607 8607 3.0723 2.2957 1 20146 5201 13147 13152 20047 20047 0.21390489652844735 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2551574707031 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 50.504 1 50.504 50.004 51.004 0 0 0 0 0.23698 1 9564 9564 0.50596 0 1 20147 5201 13147 13152 20048 20048 0.21390489652844735 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2532958984375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 100.35 1 100.35 99.853 100.85 0 0 0 0 0.23698 1 19689 19689 1.4551 0.67859 1 20148 5201 13147 13152 20049 20049 0.21390489652844735 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2372741699219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 125.83 1 121.24 120.74 121.74 -4.5984 0 0 0 0.23698 1 24808 24808 1.4551 0.67859 1 20149 5201 13147 13152 20050 20050 0.21390489652844735 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2543029785156 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 48.442 1 45.5 45 46 -2.9421 0 0 0 0.2366 1 8846 8846 3.0723 2.3746 1 20150 5201 13147 13152 20051 20051 0.21390489652844735 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2354736328125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 48.726 1 45.727 45.227 46.227 -2.999 0 0 0 0.2366 1 8898 8898 3.0723 2.3746 1 20151 5201 13147 13152 20052 20052 0.21390489652844735 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2542419433594 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 91.496 1 87.402 86.902 87.902 -4.0946 0 0 0 0.23698 1 17432 17432 0.50596 0.34663 1 20152 5201 13147 13152 20053 20053 0.21390489652844735 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.23675537109375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 139.74 1 134.79 134.29 135.29 -4.952 0 0 0 0.23698 1 26883 26883 1.4551 0.67859 1 20153 5201 13147 13152 20054 20054 0.21390489652844735 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2376708984375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 49.087 1 46.081 45.581 46.581 -3.0068 0 0 0 0.23698 1 8996 8996 1.4551 0.67859 1 20154 5201 13147 13152 20055 20055 0.21390489652844735 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24237060546875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 86.78 1 83.051 82.551 83.551 -3.7289 0 0 0 0.22632 1 16599 16599 0 0 1 20155 5201 13147 13152 20056 20056 0.21390489652844735 IAPPPKRRILI 11 Unmodified _IAPPPKRRILI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2529296875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 131.15 1 126.38 125.88 126.88 -4.7725 0 0 0 0.23698 1 25248 25248 1.4551 0.67859 1 20156 5201 13147 13152 20057 20057 0.21390489652844735 IAPPVPLKA 9 Unmodified _IAPPVPLKA_ 0 0 0 nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1;ENST00000465029.5_1_2:111419157-111435602:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant nc|ENSG00000169679|O43683-2|BUB1 nc|ENSG00000169679|O43683-2|BUB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7579345703125 2 453.294571 904.574589 0.45946 0.00020827 0.0043772 1.9842E-06 0.46383 0.00021025 453.29450007313295 102.28 0.85858 98.264 97.8 98.659 -4.0212 52 24 3 0 0 0 0.28819 1 19654 19654 32.305 9.1571 1 2392800 20157 5997 13148 13153 20058 20058 0.11848440179221598 IAQAFSGPF 9 Unmodified _IAQAFSGPF_ 0 0 0 ENSG00000112902|ENST00000382496|SEMA5A ENSG00000112902|ENST00000382496|SEMA5A ENSG00000112902|ENST00000382496|SEMA5A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.1644287109375 3 313.164116 936.470518 NaN NaN NaN NaN NaN NaN NaN 78.129 1 78.129 77.629 78.629 0 0 0 0 0.23508 1 15202 15202 1.0715 0 1 20158 2716 13149 13154 20059 20059 -0.0002588664827953835 IAQAFSGPF 9 Unmodified _IAQAFSGPF_ 0 0 0 ENSG00000112902|ENST00000382496|SEMA5A ENSG00000112902|ENST00000382496|SEMA5A ENSG00000112902|ENST00000382496|SEMA5A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.18408203125 3 313.164116 936.470518 NaN NaN NaN NaN NaN NaN NaN 107.76 1 107.76 107.26 108.26 0 0 0 0 0.23508 1 21189 21189 2.7352 0 1 20159 2716 13149 13154 20060 20060 -0.0002588664827953835 IAQAFSGPF 9 Unmodified _IAQAFSGPF_ 0 0 0 ENSG00000112902|ENST00000382496|SEMA5A ENSG00000112902|ENST00000382496|SEMA5A ENSG00000112902|ENST00000382496|SEMA5A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.17059326171875 3 313.164116 936.470518 NaN NaN NaN NaN NaN NaN NaN 102.36 1 98.171 97.671 98.671 -4.1861 0 0 0 0.23508 1 20117 20117 1.0715 0 1 20160 2716 13149 13154 20061 20061 -0.0002588664827953835 IAQHMRYQ 8 Unmodified _IAQHMRYQ_ 0 0 0 REV__ENSG00000132740|ENST00000255078|IGHMBP2 REV__ENSG00000132740|ENST00000255078|IGHMBP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6883544921875 2 523.763643 1045.51273 NaN NaN NaN NaN NaN NaN NaN 118.75 1 114.14 113.64 114.64 -4.6106 0 0 0 0.21452 1 22785 22785 13.508 4.1604 1 + 20161 16131 13150 13155 20062 20062 -0.008202345115705612 IAQPGAAYF 9 Unmodified _IAQPGAAYF_ 0 0 0 nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1 nc|ENSG00000095485|Q69YN2-2|CWF19L1 nc|ENSG00000095485|Q69YN2-2|CWF19L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.162841796875 3 313.164116 936.470518 NaN NaN NaN NaN NaN NaN NaN 72.89 1 69.351 68.851 69.851 -3.5385 0 0 0 0.23508 1 13824 13824 2.7352 0 1 20162 1861 13151 13156 20063 20063 -0.00025886648290907033 IARAAPCDL 9 Unmodified _IARAAPCDL_ 0 0 0 REV__PKDREJ|p.H1268Qfs*19|1|0.09|ENSG00000130943|chr22:46259519-46259520|-/AAATC|frameshift_variant REV__PKDREJ|p.H1268Qfs*19|1|0.09|ENSG00000130943|chr22:46259519-46259520|-/AAATC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24871826171875 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 137.56 1 132.92 132.42 133.42 -4.6413 0 0 0 0.23508 1 27151 27151 12.532 2.3482 1 + 20163 16040 13152 13157 20064 20064 0.012935583655803384 IARFFTEY 8 Unmodified _IARFFTEY_ 0 0 0 ENST00000526424.5_1_11:46969642-47125317:+|nuORF;ENST00000522712.6_1_11:46958356-47074212:+|nuORF;ENST00000532840.5_1_11:46958356-47159359:+|nuORF;nc|ENSG00000149179|Q9H6J7-3|CSTPP1;nc|ENSG00000149179|Q9H6J7-4|CSTPP1;ENSG00000149179|ENST00000278460|CSTPP1;nc|ENSG00000149179|Q9H6J7-2|CSTPP1 ENST00000526424.5_1_11:46969642-47125317:+|nuORF ENST00000526424.5_1_11:46969642-47125317:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.679443359375 2 523.768917 1045.52328 NaN NaN NaN NaN NaN NaN NaN 160.94 1 156.14 155.64 156.64 -4.7952 0 0 0 0.20294 1 32005 32005 23.148 6.2061 1 20164 4773 13153 13158 20065 20065 0.0023407141452480573 IARKMLLKL 9 Unmodified _IARKMLLKL_ 0 0 0 REV__tr|U7SU83|U7SU83_FUSNUPhosphatidicacidphosphatasetype2/haloperoxidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01054PE=4SV=1 REV__tr|U7SU83|U7SU83_FUSNUPhosphatidicacidphosphatasetype2/haloperoxidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01054PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78857421875 2 543.365004 1084.71546 NaN NaN NaN NaN NaN NaN NaN 53.028 1 53.028 52.528 53.528 0 0 0 0 0.19624 1 10089 10089 0 0 1 + 20165 25150 13154 13159 20066 20066 0.1764869556100166 IARLVPGLTPK 11 Unmodified _IARLVPGLTPK_ 0 0 0 ENSG00000162929|ENST00000402291|SANBR;nc|ENSG00000162929|Q6NSI8-2|SANBR;nc|ENSG00000162929|Q6NSI8-4|SANBR ENSG00000162929|ENST00000402291|SANBR ENSG00000162929|ENST00000402291|SANBR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 582.3095703125 2 582.876791 1163.73903 0.32869 0.00019158 2.4599 0.0014338 2.7885 0.0016254 582.8798462989977 163.37 0.099625 163.37 163.32 163.42 0 4 2 2 0 0 0 0.96118 1 32929 32929 2.7352 1.0826 1 9922800 20166 5385 13155 13160 20067 20067 0.16370832599159257 IARPLKQST 9 Unmodified _IARPLKQST_ 0 0 0 REV__nc|ENSG00000213901|Q6PIS1-2|SLC23A3 REV__nc|ENSG00000213901|Q6PIS1-2|SLC23A3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.5304870605469 3 338.541586 1012.60293 -0.78514 -0.0002658 0.67888 0.00022983 -0.10626 -3.5973E-05 338.54177383502457 44.768 0.80804 42.021 41.602 42.41 -2.7475 70 22 4 0 0 0 0.64121 1 8184 8184 0 0 1 5606700 + 20167 19650 13156 13161 20068 20068 0.0971313808852301 IARQESYL 8 Unmodified _IARQESYL_ 0 0 0 REV__ENST00000583091.1_1_17:28395652-28396225:+|nuORF REV__ENST00000583091.1_1_17:28395652-28396225:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27593994140625 2 490.263999 978.513445 0.48439 0.00023748 -0.26982 -0.00013229 0.21456 0.00010519 490.2639075851975 81.641 0.6634 81.641 81.335 81.998 0 40 18 3 0 0 0 0.2118 1 15946 15946 44.407 0.63463 1 4103400 + 20168 18060 13157 13162 20069 20069 0.023328834091330464 IARTLELIP 9 Unmodified _IARTLELIP_ 0 0 0 REV__nc|ENSG00000132128|Q15345-3|LRRC41 REV__nc|ENSG00000132128|Q15345-3|LRRC41 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.1546936035156 3 342.54997 1024.62808 0.088934 3.0464E-05 -0.45703 -0.00015656 -0.3681 -0.00012609 342.54976495249156 82.732 0.58568 78.858 78.534 79.119 -3.8736 24 16 2 0 0 0 0.884 1 15673 15673 0.26902 0.033176 1 1230100 + 20169 16097 13158 13163 20070 20070 0.11675192891107145 IARTLELIP 9 Unmodified _IARTLELIP_ 0 0 0 REV__nc|ENSG00000132128|Q15345-3|LRRC41 REV__nc|ENSG00000132128|Q15345-3|LRRC41 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 342.54997 1024.62808 -0.2775 -9.5057E-05 0.30367 0.00010402 0.026168 8.9637E-06 342.5499781608598 82.376 0.59727 78.768 78.43 79.027 -3.6079 -0.072232 0.00019093 NaN 0.26902 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1493500 + 20170 16097 13158 13163 0.11675192891107145 IARTLELIP 9 Unmodified _IARTLELIP_ 0 0 0 REV__nc|ENSG00000132128|Q15345-3|LRRC41 REV__nc|ENSG00000132128|Q15345-3|LRRC41 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.54997 1024.62808 -0.80594 -0.00027608 0.58744 0.00020123 -0.2185 -7.4848E-05 342.55011836921574 82.593 0.52003 78.894 78.624 79.144 -3.6985 0.054134 0.00048256 NaN 0.26902 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1330900 + 20171 16097 13158 13163 0.11675192891107145 IARYYRHS 8 Unmodified _IARYYRHS_ 0 0 0 ENSG00000163568|ENST00000368130|AIM2 ENSG00000163568|ENST00000368130|AIM2 ENSG00000163568|ENST00000368130|AIM2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2854614257812 2 533.283057 1064.55156 NaN NaN NaN NaN NaN NaN NaN 138.18 1 138.18 137.68 138.68 0 0 0 0 0.21486 1 27427 27427 12.532 0.89125 1 20172 5442 13159 13164 20071 20071 0.021868141144750552 IASKGVKLV 9 Unmodified _IASKGVKLV_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ACTN1|p.N119Efs*3|1|0.38|ENSG00000072110|chr14:68912228-68912229|-/TC|frameshift_variant;ACTN2|p.F256Lfs*20|1|0.38|ENSG00000077522|chr1:236735702-236735702|T/-|frameshift_variant;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENSG00000077522|ENST00000366578|ACTN2;ENST00000502692.5_1_11:66313918-66328094:+|nuORF nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3;ENST00000502692.5_1_11:66313918-66328094:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.239013671875 2 457.805303 913.596052 NaN NaN NaN NaN NaN NaN NaN 85.786 1 82.122 81.622 82.622 -3.6641 0 0 0 0.23508 1 16771 16771 12.241 0.60036 1 20173 3608;1457;7894;10631 13160 13165 20072 20072 0.13579825207932572 IASVIGFASV 10 Unmodified _IASVIGFASV_ 0 0 0 REV__ENST00000478208.1_1_7:105111092-105112609:-|nuORF REV__ENST00000478208.1_1_7:105111092-105112609:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78106689453125 2 482.279118 962.543683 -0.056411 -2.7206E-05 0.26764 0.00012908 0.21123 0.00010187 482.27917852191 108.33 0.82765 103.92 103.47 104.3 -4.4121 67 23 4 0 0 0 1.1138 1 20863 20863 14.405 4.3315 1 12612000 + 20174 22138 13161 13166 20073 20073 0.06091242074330694 IASVVMKYIR 10 Unmodified _IASVVMKYIR_ 0 0 0 REV__SNX19|p.D677Y|1|0.33|ENSG00000120451|chr11:130910023-130910023|C/A|missense_variant REV__SNX19|p.D677Y|1|0.33|ENSG00000120451|chr11:130910023-130910023|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2483520507812 2 590.349551 1178.68455 NaN NaN NaN NaN NaN NaN NaN 152.34 1 152.34 151.84 152.84 0 0 0 0 0.22588 1 30514 30514 9.3831 1.7742 1 + 20175 24664 13162 13167 20074 20074 0.1023549745609671 IASYHHHP 8 Unmodified _IASYHHHP_ 0 0 0 REV__nc|ENSG00000119121|Q9BX84-6|TRPM6 REV__nc|ENSG00000119121|Q9BX84-6|TRPM6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2364501953125 2 481.235576 960.456599 NaN NaN NaN NaN NaN NaN NaN 146.74 1 141.63 141.13 142.13 -5.1108 0 0 0 0.22625 1 28382 28382 0.68139 0 1 + 20176 15569 13163 13168 20075 20075 -0.025211193567201917 IATKSLALL 9 Unmodified _IATKSLALL_ 0 0 0 ENST00000590530.5_1_19:13002704-13010352:+|nuORF ENST00000590530.5_1_19:13002704-13010352:+|nuORF ENST00000590530.5_1_19:13002704-13010352:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25885009765625 2 465.305136 928.595718 NaN NaN NaN NaN NaN NaN NaN 150.05 1 150.05 149.55 150.55 0 0 0 0 0.18705 1 30039 30039 25.399 3.8623 1 20177 11604 13164 13169 20076 20076 0.12856405488071232 IATSEELKA 9 Unmodified _IATSEELKA_ 0 0 0 ENST00000488285.1_1_9:130486913-130493681:+|nuORF;ENSG00000167094|ENST00000373289|TTC16;ENST00000489226.5_1_9:130485405-130489873:+|nuORF ENST00000488285.1_1_9:130486913-130493681:+|nuORF ENST00000488285.1_1_9:130486913-130493681:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2499694824219 2 481.263665 960.512776 NaN NaN NaN NaN NaN NaN NaN 90.519 1 90.519 90.019 91.019 0 0 0 0 0.15147 1 17682 17682 30.225 3.3412 1 20178 5780 13165 13170 20077 20077 0.030940439694290944 IAVDDETVG 9 Unmodified _IAVDDETVG_ 0 0 0 REV__nc|ENSG00000141376|Q9H6U6-6|BCAS3 REV__nc|ENSG00000141376|Q9H6U6-6|BCAS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.22637939453125 2 459.724372 917.434192 -0.10168 -4.6746E-05 0.22852 0.00010505 0.12683 5.8308E-05 459.72437031737076 68.413 0.75227 68.413 68.071 68.823 0 43 20 3 0 0 0 0.52414 1 13200 13200 18.135 2.2878 1 3872000 + 20179 16622 13166 13171 20078 20078 -0.027828083356666866 IAVRVFYRK 9 Unmodified _IAVRVFYRK_ 0 0 0 ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2 ENSG00000133216|ENST00000374630|EPHB2 ENSG00000133216|ENST00000374630|EPHB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3191528320312 2 576.356025 1150.6975 NaN NaN NaN NaN NaN NaN NaN 157.86 1 153.08 152.58 153.58 -4.7885 0 0 0 0.19624 1 31395 31395 0 0 1 20180 3790 13167 13172 20079 20079 0.1281769663050909 IAVSAQAWN 9 Unmodified _IAVSAQAWN_ 0 0 0 ENST00000463920.5_1_1:154573515-154574721:-|nuORF;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR ENST00000463920.5_1_1:154573515-154574721:-|nuORF ENST00000463920.5_1_1:154573515-154574721:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2540588378906 2 480.250892 958.48723 0.06202 2.9785E-05 2.31 0.0011094 2.372 0.0011392 480.25107564470267 98.688 0.59149 94.555 94.193 94.784 -4.1326 42 16 4 0 0 0 0.46541 1 19404 19404 21.747 1.293 1 1873100 20181 5264 13168 13173 20080 20080 0.006326142376565258 IAVSVLSS 8 Unmodified _IAVSVLSS_ 0 0 0 sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1;sp|F5HC33|US09_HCMVMMembraneglycoproteinUS9OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US9PE=3SV=1 sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1 sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 388.20916748046875 2 388.231636 774.448719 NaN NaN NaN NaN NaN NaN NaN 105.32 1 105.32 104.82 105.82 0 0 0 0 0.23366 1 20701 20701 0.063987 0 1 20182 25722 13169 13174 20081 20081 0.05247308603156853 IAVVVFHF 8 Unmodified _IAVVVFHF_ 0 0 0 ENSG00000168412|ENST00000307161|MTNR1A ENSG00000168412|ENST00000307161|MTNR1A ENSG00000168412|ENST00000307161|MTNR1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.2333068847656 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 84.469 1 80.56 80.06 81.06 -3.9093 0 0 0 0.21486 1 16057 16057 0.45834 0 1 20183 5906 13170 13175 20082 20082 0.06467884490712095 IAVWRQKL 8 Unmodified _IAVWRQKL_ 0 0 0 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 508.3287048339844 2 507.316369 1012.61818 -0.19173 -9.7267E-05 -1.1353 -0.00057597 -1.327 -0.00067323 507.3157166099641 155.89 0.88452 150.61 150.22 151.1 -5.2854 53 24 3 0 0 0 8448 1 30286 30286 6.1918 0 1 7884300 20184 4191 13171 13176 20083 20083 0.11238049676364881 IAYIPIQI 8 Unmodified _IAYIPIQI_ 0 0 0 ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.252685546875 2 465.786579 929.558604 0.11525 5.3684E-05 1.7415 0.00081116 1.8567 0.00086484 465.78715064949273 122.04 0.17071 122.04 121.96 122.13 0 5 4 2 0 0 0 0.95284 1 24045 24045 20.871 0 1 955440 20185 4037 13172 13177 20084 20084 0.09100733942329953 IAYLFATEKF 10 Unmodified _IAYLFATEKF_ 0 0 0 REV__WNT9A|p.G167Afs*38|2|0.38|ENSG00000143816|chr1:227924253-227924253|C/-|frameshift_variant REV__WNT9A|p.G167Afs*38|2|0.38|ENSG00000143816|chr1:227924253-227924253|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.30078125 2 601.826432 1201.63831 0.50153 0.00030183 -1.7865 -0.0010752 -1.285 -0.00077332 602.3264667659964 84.096 0.17524 80.187 80.108 80.283 -3.9093 8 4 3 0 0 0 0.8888 1 15999 15999 3.9444 0 1 880320 + 20186 16752 13173 13178 20085 20085 0.04555755825640517 IAYQEPAD 8 Unmodified _IAYQEPAD_ 0 0 0 ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENSG00000184584|ENST00000330794|STING1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7596130371094 2 453.713808 905.413062 0.36795 0.00016694 -0.19895 -9.0266E-05 0.169 7.6678E-05 453.7136572798808 84.033 0.66444 84.033 83.717 84.381 0 43 18 3 0 0 0 0.47546 1 16359 16359 36.044 3.7387 1 3622800 20187 6922;10696 13174 13179 20086 20086 -0.04342773644532372 IAYQEPAD 8 Unmodified _IAYQEPAD_ 0 0 0 ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENSG00000184584|ENST00000330794|STING1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7688293457031 2 453.713808 905.413062 -0.18478 -8.3838E-05 0.45523 0.00020654 0.27045 0.00012271 453.7139525466872 88.043 0.71744 84.25 83.87 84.587 -3.7926 46 19 3 0 0 0 0.36038 1 17267 17267 34.102 1.797 1 6912000 20188 6922;10696 13174 13179 20087 20087 -0.04342773644532372 IAYQEPAD 8 Unmodified _IAYQEPAD_ 0 0 0 ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENSG00000184584|ENST00000330794|STING1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76513671875 2 453.713808 905.413062 0.3095 0.00014042 -0.017273 -7.837E-06 0.29223 0.00013259 453.71373280394573 88.333 0.73199 84.338 83.938 84.67 -3.9953 47 20 3 0 0 0 0.37918 1 16845 16845 53.576 13.618 1 5632900 20189 6922;10696 13174 13179 20088 20088 -0.04342773644532372 IAYQEPAD 8 Unmodified _IAYQEPAD_ 0 0 0 ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENSG00000184584|ENST00000330794|STING1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.713808 905.413062 -0.18478 -8.3838E-05 0.45523 0.00020654 0.27045 0.00012271 453.7139525466872 88.043 0.71744 84.25 83.87 84.587 -3.7926 0.029787 0.00029159 NaN 34.102 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6912000 20190 6922;10696 13174 13179 -0.04342773644532372 IAYQEPAD 8 Unmodified _IAYQEPAD_ 0 0 0 ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENSG00000184584|ENST00000330794|STING1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.713808 905.413062 0.13504 6.1269E-05 0.18864 8.5588E-05 0.32368 0.00014686 453.71379675925164 88.01 0.72991 84.26 83.909 84.639 -3.7501 0.040026 4.9672E-05 NaN 34.102 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5121700 20191 6922;10696 13174 13179 -0.04342773644532372 IAYVFYGP 8 Unmodified _IAYVFYGP_ 0 0 0 DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant;DSEL|p.R969Kfs*4|1|0.26|ENSG00000171451|chr18:67511733-67511734|-/T|frameshift_variant;DSEL|p.R969Efs*16|1|0.36|ENSG00000171451|chr18:67511734-67511734|T/-|frameshift_variant;ENSG00000171451|ENST00000310045|DSEL DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2414855957031 2 465.242004 928.469455 NaN NaN NaN NaN NaN NaN NaN 64.756 1 61.298 60.798 61.798 -3.4581 0 0 0 0.21486 1 12108 12108 11.114 1.767 1 20192 895 13175 13180 20089 20089 0.0023589898280533816 ICKYKQRF 8 Unmodified _ICKYKQRF_ 0 0 0 ENSG00000019485|ENST00000683152|PRDM11 ENSG00000019485|ENST00000683152|PRDM11 ENSG00000019485|ENST00000683152|PRDM11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 362.5477294921875 3 362.535667 1084.58517 NaN NaN NaN NaN NaN NaN NaN 69.133 1 65.743 65.243 66.243 -3.3903 0 0 0 0.22847 1 13067 13067 10.074 10.001 1 20193 1121 13176 13181 20090 20090 0.046260995620059475 ICMMFVGR 8 Unmodified _ICMMFVGR_ 0 0 0 REV__nc|ENSG00000204394|P26640-2|VARS1 REV__nc|ENSG00000204394|P26640-2|VARS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72894287109375 2 478.729369 955.444185 NaN NaN NaN NaN NaN NaN NaN 157.91 1 153.12 152.62 153.62 -4.7885 0 0 0 0.23366 1 31404 31404 0.12286 0 1 + 20194 19531 13177 13182 20091 20091 -0.03531938407263624 ICYDKSWNES 10 Unmodified _ICYDKSWNES_ 0 0 0 REV__SPPL2C|p.P619Lfs*7|1|0.33|ENSG00000185294|chr17:45846757-45846757|C/-|frameshift_variant REV__SPPL2C|p.P619Lfs*7|1|0.33|ENSG00000185294|chr17:45846757-45846757|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7670288085938 2 622.766245 1243.51794 NaN NaN NaN NaN NaN NaN NaN 47.903 1 44.953 44.453 45.453 -2.9499 0 0 0 0.22588 1 8758 8758 6.2058 0 1 + 20195 18955 13178 13183 20092 20092 -0.09408020230239345 IDAEELSAL 9 Unmodified _IDAEELSAL_ 0 0 0 REV__ENST00000554026.5_1_14:76542964-76548711:+|nuORF REV__ENST00000554026.5_1_14:76542964-76548711:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25 2 480.747847 959.481142 0.39314 0.000189 -0.21683 -0.00010424 0.17631 8.476E-05 480.7476854761429 124.72 1.8222 119.96 119.25 121.07 -4.7681 137 51 5 0 0 0 0.042631 1 24053 24053 74.423 0 1 87697000 + 20196 22968 13179 13184 20093 20093 -0.00021948784524283838 IDAGSELVQI 10 Unmodified _IDAGSELVQI_ 0 0 0 REV__tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1 REV__tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2799682617188 2 522.782222 1043.54989 0.70015 0.00036603 -0.86075 -0.00044999 -0.1606 -8.3958E-05 522.7816860303719 103.68 0.73936 99.623 99.243 99.983 -4.0543 51 20 4 0 0 0 0.083999 1 19941 19941 66.457 6.3828 1 4673400 + 20197 25361 13180 13185 20094 20094 0.02985715515183074 IDAQNNTYAA 10 Unmodified _IDAQNNTYAA_ 0 0 0 REV__nc|ENSG00000163531|O94856-12|NFASC REV__nc|ENSG00000163531|O94856-12|NFASC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.279541015625 2 540.751453 1079.48835 0.34244 0.00018518 0.35512 0.00019203 0.69757 0.00037721 540.751256287685 32.554 0.38921 30.324 30.117 30.507 -2.2305 24 10 3 0 0 0 0.6817 1 5912 5912 13.042 1.928 1 1683600 + 20198 24130 13181 13186 20095 20095 -0.04821216184109289 IDATRVNMLYI 11 Unmodified _IDATRVNMLYI_ 0 0 0 ENST00000273968.4_1_4:89442642-89442780:-|nuORF ENST00000273968.4_1_4:89442642-89442780:-|nuORF ENST00000273968.4_1_4:89442642-89442780:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2164611816406 3 436.904196 1307.69076 NaN NaN NaN NaN NaN NaN NaN 110.4 1 110.4 109.9 110.9 0 0 0 0 0.23391 1 21713 21713 5.1984 1.0818 1 20199 8422 13182 13187 20096 20096 0.04921970896975836 IDATVQNL 8 Unmodified _IDATVQNL_ 0 0 0 REV__UGT3A1|p.T419I|1|0.22|ENSG00000145626|chr5:35955684-35955684|G/A|missense_variant REV__UGT3A1|p.T419I|1|0.22|ENSG00000145626|chr5:35955684-35955684|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2356872558594 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 74.093 1 74.093 73.593 74.593 0 0 0 0 0.21486 1 14380 14380 9.3474 0 1 + 20200 25514 13183 13188 20097 20097 0.019015056264720442 IDCLEVEYYD 10 Unmodified _IDCLEVEYYD_ 0 0 0 PRKG2|p.K707Yfs*4|1|0.03|ENSG00000138669|chr4:81104377-81104378|-/TAGTAGATGTA|frameshift_variant;nc|ENSG00000138669|Q13237-2|PRKG2;ENSG00000138669|ENST00000264399|PRKG2;PRKG2|p.N474Kfs*2|1|0.43|ENSG00000138669|chr4:81140655-81140656|-/T|frameshift_variant PRKG2|p.K707Yfs*4|1|0.03|ENSG00000138669|chr4:81104377-81104378|-/TAGTAGATGTA|frameshift_variant PRKG2|p.K707Yfs*4|1|0.03|ENSG00000138669|chr4:81104377-81104378|-/TAGTAGATGTA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.77099609375 2 631.268287 1260.52202 0.82527 0.00052097 -0.60488 -0.00038184 0.22039 0.00013913 631.2682089881307 72.424 0.5008 69.113 69.025 69.526 -3.3107 17 13 2 0 0 0 0.91149 1 14110 14110 1.3295 0 1 3290000 20201 4198 13184 13189 20098 20098 -0.0978197552722122 IDDDVWTY 8 Unmodified _IDDDVWTY_ 0 0 0 REV__nc|ENSG00000172869|Q9Y485|DMXL1 REV__nc|ENSG00000172869|Q9Y485|DMXL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.1972351074219 3 342.818674 1025.43419 0.13327 4.5687E-05 -0.016861 -5.7803E-06 0.11641 3.9906E-05 342.8185569243798 62.224 0.773 58.854 58.568 59.341 -3.3694 39 21 3 0 0 0 0.81659 1 11562 11562 3.5965 0 1 2899900 + 20202 13701 13185 13190 20099 20099 -0.0775080833566335 IDDEMDPQ 8 Unmodified _IDDEMDPQ_ 0 0 0 PAIP1|p.E461Q|1|0.21|ENSG00000172239|chr5:43527435-43527435|C/G|missense_variant PAIP1|p.E461Q|1|0.21|ENSG00000172239|chr5:43527435-43527435|C/G|missense_variant PAIP1|p.E461Q|1|0.21|ENSG00000172239|chr5:43527435-43527435|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76971435546875 2 481.692215 961.369877 NaN NaN NaN NaN NaN NaN NaN 161.77 1 156.63 156.13 157.13 -5.1438 0 0 0 0.21486 1 31417 31417 5.2307 0 1 20203 12750 13186 13191 20100 20100 -0.11235331484112976 IDDKITVI 8 Unmodified _IDDKITVI_ 0 0 0 tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1 tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1 tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2419738769531 2 458.771126 915.527698 0.48476 0.00022239 -0.2884 -0.00013231 0.19635 9.0082E-05 458.7709227736512 116.32 1.4811 111.96 111.39 112.87 -4.3585 119 41 4 0 0 0 0.28309 1 22389 22389 65.235 0 1 61174000 20204 26040 13187 13192 20101 20101 0.06655535837421667 IDDKVVMIN 9 Unmodified _IDDKVVMIN_ 0 0 0 REV__nc|ENSG00000157064|Q9BZQ4-2|NMNAT2 REV__nc|ENSG00000157064|Q9BZQ4-2|NMNAT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6979370117188 2 523.781167 1045.54778 0.042584 2.2305E-05 -0.078602 -4.117E-05 -0.036018 -1.8866E-05 523.7810689536167 95.501 0.55244 95.501 95.284 95.836 0 23 15 2 0 0 0 0.62314 1 18746 18746 11.495 1.3113 1 1545700 + 20205 17279 13188 13193 20102 20102 0.026829635057538326 IDDLIQKL 8 Unmodified _IDDLIQKL_ 0 0 0 DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.F2761Lfs*20|1|0.09|ENSG00000187240|chr11:103203742-103203742|T/-|frameshift_variant DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.721923828125 2 479.2844 956.554247 -0.057134 -2.7383E-05 0.23639 0.0001133 0.17926 8.5915E-05 479.28449331872423 121.12 0.65501 121.12 120.82 121.47 0 36 17 3 0 0 0 0.30817 1 23865 23865 42.095 0 1 3728300 20206 900 13189 13194 20103 20103 0.0742322472875685 IDDNIIHFT 9 Unmodified _IDDNIIHFT_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7786254882812 2 544.274564 1086.53457 0.20706 0.0001127 0.27672 0.00015061 0.48378 0.00026331 544.2748656090779 102.27 1.3621 98.089 97.479 98.841 -4.1861 36 23 2 0 0 0 0.38188 1 20037 20037 26.884 1.4843 1 5056900 20207 7627 13190 13195 20104 20104 -0.005231512819818818 IDDRLRGRQIE 11 Unmodified _IDDRLRGRQIE_ 0 0 0 REV__nc|ENSG00000185963|Q8TD16|BICD2 REV__nc|ENSG00000185963|Q8TD16|BICD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 685.8154296875 2 685.878582 1369.74261 NaN NaN NaN NaN NaN NaN NaN 167.79 1 162.84 162.34 163.34 -4.948 0 0 0 0.21513 1 33039 33039 15.248 0 1 + 20208 19001 13191 13196 20105 20105 0.07252850635086361 IDDTAWKI 8 Unmodified _IDDTAWKI_ 0 0 0 REV__nc|ENSG00000138821|Q9C0K1-3|SLC39A8 REV__nc|ENSG00000138821|Q9C0K1-3|SLC39A8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2541809082031 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 106.05 1 101.79 101.29 102.29 -4.2638 0 0 0 0.21323 1 20876 20876 14.582 2.0501 1 + 20209 24066 13192 13197 20106 20106 0.00982078660570096 IDDTAWKI 8 Unmodified _IDDTAWKI_ 0 0 0 REV__nc|ENSG00000138821|Q9C0K1-3|SLC39A8 REV__nc|ENSG00000138821|Q9C0K1-3|SLC39A8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2537536621094 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 78.168 1 74.401 73.901 74.901 -3.7664 0 0 0 0.21323 1 14818 14818 14.582 0.67564 1 + 20210 24066 13192 13197 20107 20107 0.00982078660570096 IDDTAWKI 8 Unmodified _IDDTAWKI_ 0 0 0 REV__nc|ENSG00000138821|Q9C0K1-3|SLC39A8 REV__nc|ENSG00000138821|Q9C0K1-3|SLC39A8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2547912597656 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 92.193 1 88.384 87.884 88.884 -3.8083 0 0 0 0.21486 1 17662 17662 9.3474 0 1 + 20211 24066 13192 13197 20108 20108 0.00982078660570096 IDDWVKSV 8 Unmodified _IDDWVKSV_ 0 0 0 REV__ENSG00000125676|ENST00000245838|THOC2 REV__ENSG00000125676|ENST00000245838|THOC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2379455566406 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 104.88 1 104.88 104.38 105.38 0 0 0 0 0.18898 1 20612 20612 28.487 3.0875 1 + 20212 15822 13193 13198 20109 20109 0.00982078660570096 IDEADIPPPV 10 Unmodified _IDEADIPPPV_ 0 0 0 CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000585896.5_1_19:14020678-14030767:+|nuORF;CC2D1A|p.P344Tfs*59|1|0.39|ENSG00000132024|chr19:13918916-13918917|-/C|frameshift_variant CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2719116210938 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 120.36 1 115.89 115.39 116.39 -4.467 0 0 0 0.22544 1 23173 23173 19.257 1.1106 1 20213 403 13194 13199 20110 20110 0.009303131408842091 IDEALNRV 8 Unmodified _IDEALNRV_ 0 0 0 tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1 tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1 tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25482177734375 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 130.42 1 130.42 129.92 130.92 0 0 0 0 0.21486 1 25778 25778 9.3474 0 1 20214 26001 13195 13200 20111 20111 0.030685968920806772 IDEDTLTRN 9 Unmodified _IDEDTLTRN_ 0 0 0 REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1 REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 538.1964721679688 2 538.76456 1075.51457 1.256 0.00067671 0.69214 0.0003729 1.9482 0.0010496 539.2663527871143 26.455 0.27719 24.673 24.483 24.76 -1.7821 10 7 2 0 0 0 0.86627 1 4651 4651 5.7319 2.1354 1 233320 + 20215 25263 13196 13201 20112 20112 -0.020169470126347733 IDEKIKTL 8 Unmodified _IDEKIKTL_ 0 0 0 REV__ENSG00000143971|ENST00000272342|ETAA1 REV__ENSG00000143971|ENST00000272342|ETAA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 480.2928466796875 2 480.292225 958.569897 NaN NaN NaN NaN NaN NaN NaN 140.76 1 140.76 140.26 141.26 0 0 0 0 0.21452 1 28035 28035 13.508 0 1 + 20216 16761 13197 13202 20113 20113 0.08895511245816579 IDEKRLAGY 9 Unmodified _IDEKRLAGY_ 0 0 0 nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523321.5_1_8:95835614-95871872:+|nuORF nc|ENSG00000164941|Q75QN2-2|INTS8 nc|ENSG00000164941|Q75QN2-2|INTS8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27490234375 2 532.790381 1063.56621 0.53874 0.00028704 0.092919 4.9506E-05 0.63166 0.00033654 532.7899758842595 79.543 0.5574 79.543 79.2 79.758 0 20 15 2 0 0 0 0.66537 1 15419 15419 8.5933 0 1 1574100 20217 5578 13198 13203 20114 20114 0.03696841471969492 IDELASLVP 9 Unmodified _IDELASLVP_ 0 0 0 ENST00000497429.5_1_11:13380020-13391245:+|nuORF;nc|ENSG00000133794|O00327-3|BMAL1;nc|ENSG00000133794|O00327-5|BMAL1;nc|ENSG00000133794|O00327-4|BMAL1;nc|ENSG00000133794|O00327-6|BMAL1;nc|ENSG00000133794|O00327-9|BMAL1;nc|ENSG00000133794|O00327-1|BMAL1;nc|ENSG00000133794|O00327-7|BMAL1;nc|ENSG00000133794|O00327-8|BMAL1;ENSG00000133794|ENST00000403290|BMAL1 ENST00000497429.5_1_11:13380020-13391245:+|nuORF ENST00000497429.5_1_11:13380020-13391245:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7218933105469 2 478.768583 955.522613 -0.003037 -1.454E-06 0.10871 5.2047E-05 0.10567 5.0593E-05 478.76853361076337 132.38 0.85397 127.74 127.31 128.16 -4.6399 53 23 3 0 0 0 0.35443 1 26167 26167 28.487 0 1 5632800 20218 3816 13199 13204 20115 20115 0.0430723197481484 IDERRKEDIFY 11 Unmodified _IDERRKEDIFY_ 0 0 0 REV__tr|U7SG87|U7SG87_FUSNUAlanyl-transferRNAsynthetasesfamilyprofiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02220PE=4SV=1 REV__tr|U7SG87|U7SG87_FUSNUAlanyl-transferRNAsynthetasesfamilyprofiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02220PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3807373046875 2 742.380623 1482.74669 NaN NaN NaN NaN NaN NaN NaN 114.56 1 114.56 114.06 115.06 0 0 0 0 0.23698 1 22536 22536 2.7352 0 1 + 20219 24868 13200 13205 20116 20116 0.024628953381352403 IDETQDYY 8 Unmodified _IDETQDYY_ 0 0 0 REV__RXFP2|p.L680Pfs*4|1|0.15|ENSG00000133105|chr13:31802169-31802170|-/T|frameshift_variant REV__RXFP2|p.L680Pfs*4|1|0.15|ENSG00000133105|chr13:31802169-31802170|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6826782226562 2 523.719287 1045.42402 NaN NaN NaN NaN NaN NaN NaN 134.43 1 129.79 129.29 130.29 -4.6399 0 0 0 0.21486 1 26509 26509 5.7604 0 1 + 20220 16156 13201 13206 20117 20117 -0.09687416060910436 IDEVCLYILA 10 Unmodified _IDEVCLYILA_ 0 0 0 REV__ENSG00000155465|ENST00000674313|SLC7A7 REV__ENSG00000155465|ENST00000674313|SLC7A7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3118896484375 2 576.304475 1150.5944 NaN NaN NaN NaN NaN NaN NaN 43.026 1 43.026 42.526 43.526 0 0 0 0 0.22569 1 8055 8055 15.847 1.0089 1 + 20221 17217 13202 13207 20118 20118 0.025124033370275356 IDEVSCDSIT 10 Unmodified _IDEVSCDSIT_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2637939453125 2 541.239529 1080.46451 NaN NaN NaN NaN NaN NaN NaN 65.323 1 61.865 61.365 62.365 -3.4581 0 0 0 0.22566 1 12217 12217 16.149 1.3108 1 20222 5053 13203 13208 20119 20119 -0.07250817732779069 IDEYSASRGP 10 Unmodified _IDEYSASRGP_ 0 0 0 REV__ENSG00000108021|ENST00000695737|TASOR2 REV__ENSG00000108021|ENST00000695737|TASOR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77783203125 2 547.759278 1093.504 0.13241 7.253E-05 3.1857 0.001745 3.3181 0.0018175 548.261468104181 90.728 0.14001 86.868 86.789 86.929 -3.8595 5 3 2 0 0 0 0.59928 1 17757 17757 19.257 4.4187 1 745190 + 20223 15106 13204 13209 20120 20120 -0.03900929667042874 IDFGTTSSGY 10 Unmodified _IDFGTTSSGY_ 0 0 0 ENSG00000132622|ENST00000254963|HSPA12B ENSG00000132622|ENST00000254963|HSPA12B ENSG00000132622|ENST00000254963|HSPA12B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6869506835938 2 524.235104 1046.45566 0.093638 4.9089E-05 -0.59936 -0.0003142 -0.50572 -0.00026511 524.2344892114388 121.36 0.85094 116.67 116.28 117.13 -4.6873 53 22 3 0 0 0 0.70357 1 23342 23342 10.824 2.2306 1 7001100 20224 3749 13205 13210 20121 20121 -0.06571423306922952 IDFWWWIVHNW 11 Unmodified _IDFWWWIVHNW_ 0 0 0 ENST00000503862.5_3_4:108746377-108829880:+|nuORF ENST00000503862.5_3_4:108746377-108829880:+|nuORF ENST00000503862.5_3_4:108746377-108829880:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 534.5946044921875 3 534.594461 1600.76155 NaN NaN NaN NaN NaN NaN NaN 173.44 1 168.65 168.15 169.15 -4.7898 0 0 0 0.23698 1 35381 35381 0.45452 0.35968 1 20225 10649 13206 13211 20122 20122 -0.014795680031966185 IDGSFEIVY 9 Unmodified _IDGSFEIVY_ 0 0 0 REV__FFAR3|p.V149M|1|0.18|ENSG00000185897|chr19:35359335-35359335|G/A|missense_variant REV__FFAR3|p.V149M|1|0.18|ENSG00000185897|chr19:35359335-35359335|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.266845703125 2 521.758215 1041.50188 -0.30123 -0.00015717 0.77363 0.00040365 0.4724 0.00024648 521.758449702962 117.8 0.87901 113.19 112.79 113.67 -4.6106 66 24 4 0 0 0 0.1793 1 22550 22550 39.957 0.0076237 1 9483600 + 20226 15853 13207 13212 20123 20123 -0.017213584048704433 IDGSINNINED 11 Unmodified _IDGSINNINED_ 0 0 0 DDX25|p.R437Afs*11|1|0.24|ENSG00000109832|chr11:125921294-125921294|G/-|frameshift_variant;ENSG00000109832|ENST00000263576|DDX25 DDX25|p.R437Afs*11|1|0.24|ENSG00000109832|chr11:125921294-125921294|G/-|frameshift_variant DDX25|p.R437Afs*11|1|0.24|ENSG00000109832|chr11:125921294-125921294|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2739868164062 2 602.278032 1202.54151 NaN NaN NaN NaN NaN NaN NaN 115.39 1 110.84 110.34 111.34 -4.555 0 0 0 0.2018 1 22154 22154 18.373 0.22675 1 20227 799 13208 13213 20124 20124 -0.05165883192103138 IDGTSQDNCYS 11 Unmodified _IDGTSQDNCYS_ 0 0 0 REV__ENSG00000165704|ENST00000298556|HPRT1 REV__ENSG00000165704|ENST00000298556|HPRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.28662109375 2 601.735142 1201.45573 0.39574 0.00023813 -0.45904 -0.00027622 -0.063304 -3.8092E-05 602.2370650542035 152.72 0.14438 152.72 152.63 152.78 0 5 3 2 0 0 0 0.66146 1 30580 30580 0.0059557 0 1 943600 + 20228 17797 13209 13214 20125 20125 -0.13693791369246355 IDHIDEKAF 9 Unmodified _IDHIDEKAF_ 0 0 0 ENSG00000139329|ENST00000266718|LUM ENSG00000139329|ENST00000266718|LUM ENSG00000139329|ENST00000266718|LUM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.1419982910156 3 363.185468 1086.53457 -0.42137 -0.00015304 0.52574 0.00019094 0.10437 3.7904E-05 363.1856553556633 91.874 0.46677 91.874 91.659 92.126 0 23 12 3 0 0 0 0.8319 1 17964 17964 4.897 0 1 2142400 + 20229 4240 13210 13215 20126 20126 -0.005231512820046191 IDHIDEKAF 9 Unmodified _IDHIDEKAF_ 0 0 0 ENSG00000139329|ENST00000266718|LUM ENSG00000139329|ENST00000266718|LUM ENSG00000139329|ENST00000266718|LUM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 363.185468 1086.53457 -0.21093 -7.6606E-05 0.26966 9.7935E-05 0.058729 2.1329E-05 363.18558354018114 95.647 0.58739 91.597 91.338 91.925 -4.0496 -0.079215 -0.00014047 NaN 4.897 32 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2083400 + 20230 4240 13210 13215 -0.005231512820046191 IDHIDEKAF 9 Unmodified _IDHIDEKAF_ 0 0 0 ENSG00000139329|ENST00000266718|LUM ENSG00000139329|ENST00000266718|LUM ENSG00000139329|ENST00000266718|LUM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 363.185468 1086.53457 0.13318 4.837E-05 0.003009 1.0928E-06 0.13619 4.9463E-05 363.1854690460936 95.792 0.5071 91.601 91.345 91.852 -4.1911 -0.075669 -0.000431 NaN 4.897 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1521800 + 20231 4240 13210 13215 -0.005231512820046191 IDHIDEKAF 9 Unmodified _IDHIDEKAF_ 0 0 0 ENSG00000139329|ENST00000266718|LUM ENSG00000139329|ENST00000266718|LUM ENSG00000139329|ENST00000266718|LUM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 363.185468 1086.53457 -0.69373 -0.00025195 0.86173 0.00031297 0.168 6.1013E-05 363.18577962801197 95.515 0.58952 91.633 91.262 91.852 -3.881 -0.042833 0.00050462 NaN 4.897 32 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2129500 + 20232 4240 13210 13215 -0.005231512820046191 IDHWLYFS 8 Unmodified _IDHWLYFS_ 0 0 0 tr|U7SXZ6|U7SXZ6_FUSNUTIGR01619familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00936PE=4SV=1 tr|U7SXZ6|U7SXZ6_FUSNUTIGR01619familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00936PE=4SV=1 tr|U7SXZ6|U7SXZ6_FUSNUTIGR01619familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00936PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2606201171875 2 540.761092 1079.50763 0.41091 0.00022221 4.0496 0.0021898 4.4605 0.0024121 541.2636532896079 84.259 1.2648 84.259 83.326 84.591 0 73 35 3 0 0 0 0.66265 1 16484 16484 18.135 3.2967 1 3708000 20233 26273 13211 13216 20127 20127 -0.028942151025376006 IDHYCKHSEE 10 Unmodified _IDHYCKHSEE_ 0 0 0 ENSG00000179008|ENST00000321731|C14orf39 ENSG00000179008|ENST00000321731|C14orf39 ENSG00000179008|ENST00000321731|C14orf39 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.756591796875 2 630.769319 1259.52409 NaN NaN NaN NaN NaN NaN NaN 162.99 1 157.84 157.34 158.34 -5.1438 0 0 0 0.22588 1 31693 31693 6.2058 0.47393 1 20234 6601 13212 13217 20128 20128 -0.09529501998736123 IDILIVWE 8 Unmodified _IDILIVWE_ 0 0 0 IDH3G|p.R167W|1|0.2|ENSG00000067829|chrX:153787864-153787864|G/A|missense_variant IDH3G|p.R167W|1|0.2|ENSG00000067829|chrX:153787864-153787864|G/A|missense_variant IDH3G|p.R167W|1|0.2|ENSG00000067829|chrX:153787864-153787864|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.03466796875 3 334.195304 999.564084 -0.25182 -8.4156E-05 2.8719 0.00095977 2.6201 0.00087561 334.1976863675908 29.18 0.38075 27.184 27.007 27.387 -1.9962 18 10 3 0 0 0 1.0276 1 4917 4917 0 0 1 355010 20235 11932 13213 13218 20129 20129 0.06428412734146605 IDKCAEQL 8 Unmodified _IDKCAEQL_ 0 0 0 REV__nc|ENSG00000114302|P13861-2|PRKAR2A REV__nc|ENSG00000114302|P13861-2|PRKAR2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2394714355469 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 75.23 1 71.866 71.366 72.366 -3.3643 0 0 0 0.21292 1 14675 14675 14.838 0 1 + 20236 13855 13214 13219 20130 20130 -0.014418541082250158 IDKCAEQL 8 Unmodified _IDKCAEQL_ 0 0 0 REV__nc|ENSG00000114302|P13861-2|PRKAR2A REV__nc|ENSG00000114302|P13861-2|PRKAR2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2330627441406 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 126.68 1 122.06 121.56 122.56 -4.6172 0 0 0 0.20618 1 24978 24978 20.454 4.6064 1 + 20237 13855 13214 13219 20131 20131 -0.014418541082250158 IDKDLVGF 8 Unmodified _IDKDLVGF_ 0 0 0 REV__ENSG00000118322|ENST00000327245|ATP10B REV__ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7500305175781 2 453.750193 905.485833 0.24386 0.00011065 0.085354 3.8729E-05 0.32922 0.00014938 453.75012563084294 111.7 0.83435 111.7 111.24 112.08 0 49 23 3 0 0 0 0.15482 1 22015 22015 52.268 1.4133 1 5366200 + 20238 15548 13215 13220 20132 20132 0.029309801489148413 IDKEEHLY 8 Unmodified _IDKEEHLY_ 0 0 0 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7018432617188 2 523.761289 1045.50803 -0.32002 -0.00016762 -0.070377 -3.6861E-05 -0.3904 -0.00020448 523.7614573324408 93.678 0.77556 89.534 88.944 89.72 -4.1435 41 22 3 0 0 0 0.27274 1 17833 17833 38.151 0 1 2924000 20239 6619;5017 13216 13221 20133 20133 -0.012908401733284336 IDKEEHLY 8 Unmodified _IDKEEHLY_ 0 0 0 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6770629882812 2 523.761289 1045.50803 0.16404 8.5919E-05 -0.30592 -0.00016023 -0.14188 -7.4313E-05 523.761473953131 86.906 0.24852 83.177 83.012 83.261 -3.7289 11 6 2 0 0 0 0.23433 1 16592 16592 42.095 0 1 1291000 20240 6619;5017 13216 13221 20134 20134 -0.012908401733284336 IDKEEHLY 8 Unmodified _IDKEEHLY_ 0 0 0 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.761289 1045.50803 -0.24273 -0.00012713 0.36678 0.0001921 0.12405 6.4972E-05 523.7614347461497 86.929 0.42378 83.202 82.975 83.399 -3.727 0.037702 3.3867E-05 NaN 42.095 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1263300 20241 6619;5017 13216 13221 -0.012908401733284336 IDKFHVHI 8 Unmodified _IDKFHVHI_ 0 0 0 REV__nc|ENSG00000141956|P57071|PRDM15 REV__nc|ENSG00000141956|P57071|PRDM15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 504.7832336425781 2 504.784902 1007.55525 NaN NaN NaN NaN NaN NaN NaN 150.7 1 145.58 145.08 146.08 -5.1204 0 0 0 0.21486 1 29209 29209 5.7604 1.816 1 + 20242 24076 13217 13222 20135 20135 0.051774838883375196 IDKKLKDIV 9 Unmodified _IDKKLKDIV_ 0 0 0 tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1 tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1 tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5523376464844 3 357.897258 1070.66995 -0.24236 -8.6742E-05 0.69553 0.00024893 0.45316 0.00016219 357.89738951663753 32.44 0.31202 32.44 32.224 32.536 0 17 8 3 0 0 0 0.87609 1 5864 5864 2.2828 0 1 574220 20243 25946 13218 13223 20136 20136 0.13743748579599924 IDKLEFGME 9 Unmodified _IDKLEFGME_ 0 0 0 REV__nc|ENSG00000165006|Q9NZ09-3|UBAP1 REV__nc|ENSG00000165006|Q9NZ09-3|UBAP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2665405273438 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 115.7 1 111.22 110.72 111.72 -4.4726 0 0 0 0.23508 1 22810 22810 9.3831 1.473 1 + 20244 24144 13219 13224 20137 20137 -0.02089029248213592 IDKLQLHDP 9 Unmodified _IDKLQLHDP_ 0 0 0 REV__ENSG00000122557|ENST00000311350|HERPUD2 REV__ENSG00000122557|ENST00000311350|HERPUD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2020568847656 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 115.98 1 111.4 110.9 111.9 -4.5815 0 0 0 0.23508 1 22259 22259 2.4985 0 1 + 20245 15696 13220 13225 20138 20138 0.046171279889904326 IDKQISLRP 9 Unmodified _IDKQISLRP_ 0 0 0 REV__KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant REV__KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.55694580078125 3 357.216991 1068.62914 -0.11772 -4.2053E-05 -2.8878 -0.0010316 -3.0055 -0.0010736 357.5489370189557 108.54 0.24315 104.08 103.98 104.22 -4.4518 10 6 2 0 0 0 0.5202 1 20850 20850 0.12781 0.054551 1 653690 + 20246 15912 13221 13226 20139 20139 0.09757407260008222 IDKRIKTILC 10 Unmodified _IDKRIKTILC_ 0 0 0 tr|U7T276|U7T276_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00497PE=4SV=1 tr|U7T276|U7T276_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00497PE=4SV=1 tr|U7T276|U7T276_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00497PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2881469726562 2 601.868108 1201.72166 0.47116 0.00028358 3.7001 0.002227 4.1713 0.0025105 602.3731034185266 148.21 0.21527 143.05 142.97 143.19 -5.1558 6 5 2 0 0 0 0.871 1 28674 28674 14.838 6.0929 1 1232400 20247 26347 13222 13227 20140 20140 0.12887169001896837 IDKSLRNLI 9 Unmodified _IDKSLRNLI_ 0 0 0 REV__CFTR|p.F976L|2|0.19|ENSG00000001626|chr7:117606693-117606693|C/A|missense_variant REV__CFTR|p.F976L|2|0.19|ENSG00000001626|chr7:117606693-117606693|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.560546875 3 357.888874 1070.64479 0.048172 1.724E-05 -0.13569 -4.8563E-05 -0.087519 -3.1322E-05 357.8888086497468 81.936 1.4754 78.097 77.543 79.019 -3.8392 97 42 5 0 0 0 0.63755 1 15709 15709 0 0 1 30366000 + 20248 13393 13223 13228 20141 20141 0.1122969377706795 IDKSLRNLI 9 Unmodified _IDKSLRNLI_ 0 0 0 REV__CFTR|p.F976L|2|0.19|ENSG00000001626|chr7:117606693-117606693|C/A|missense_variant REV__CFTR|p.F976L|2|0.19|ENSG00000001626|chr7:117606693-117606693|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.56103515625 3 357.888874 1070.64479 -0.84903 -0.00030386 0.71593 0.00025622 -0.1331 -4.7635E-05 357.8891482495885 81.718 2.1855 78.03 77.071 79.257 -3.6879 125 62 5 0 0 0 0.87918 1 15780 15780 2.7352 0 1 33894000 + 20249 13393 13223 13228 20142 20142 0.1122969377706795 IDLALSKRVK 10 Unmodified _IDLALSKRVK_ 0 0 0 REV__nc|ENSG00000101057|P10244-2|MYBL2 REV__nc|ENSG00000101057|P10244-2|MYBL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2099304199219 3 381.580041 1141.71829 -0.26503 -0.00010113 0.70276 0.00026816 0.43773 0.00016703 381.91480122228745 114.71 0.14498 110.23 110.15 110.29 -4.4726 5 3 2 0 0 0 0.91149 1 22599 22599 0.12286 0 1 433570 + 20250 14759 13224 13229 20143 20143 0.15310242219516113 IDLHSAPP 8 Unmodified _IDLHSAPP_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;DIP2A|p.P1075Rfs*15|1|0.35|ENSG00000160305|chr21:46554640-46554640|C/-|frameshift_variant;nc|ENSG00000160305|Q14689-5|DIP2A nc|ENSG00000160305|Q14689-6|DIP2A nc|ENSG00000160305|Q14689-6|DIP2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2547302246094 2 425.226885 848.439217 NaN NaN NaN NaN NaN NaN NaN 73.951 1 73.951 73.451 74.451 0 0 0 0 0.21486 1 14351 14351 8.5933 2.8329 1 20251 5248 13225 13230 20144 20144 0.008935403176110412 IDLIVMAITY 10 Unmodified _IDLIVMAITY_ 0 0 0 REV__tr|U7SV29|U7SV29_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01107PE=4SV=1 REV__tr|U7SV29|U7SV29_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01107PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3240356445312 2 576.322668 1150.63078 NaN NaN NaN NaN NaN NaN NaN 53.677 1 50.582 50.082 51.082 -3.0954 0 0 0 0.22588 1 9922 9922 6.7232 0.51738 1 + 20252 25182 13226 13231 20145 20145 0.06149280233717036 IDLLRQQQRWK 11 Unmodified _IDLLRQQQRWK_ 0 0 0 DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.F2761Lfs*20|1|0.09|ENSG00000187240|chr11:103203742-103203742|T/-|frameshift_variant;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1 DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.373291015625 2 742.428242 1482.84193 NaN NaN NaN NaN NaN NaN NaN 172.26 1 167.37 166.87 167.87 -4.881 0 0 0 0.23698 1 34179 34179 1.3295 0 1 20253 900 13227 13232 20146 20146 0.11982293319829296 IDLLVLIIPQ 10 Unmodified _IDLLVLIIPQ_ 0 0 0 REV__ENST00000485781.5_1_2:63816129-63824744:+|nuORF REV__ENST00000485781.5_1_2:63816129-63824744:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 568.9808349609375 2 568.8681 1135.72165 NaN NaN NaN NaN NaN NaN NaN 162.8 1 157.61 157.11 158.11 -5.1878 0 0 0 0.22588 1 31631 31631 3.5965 1.5367 1 + 20254 13954 13228 13233 20147 20147 0.1592149227351456 IDLTEDSNEQP 11 Unmodified _IDLTEDSNEQP_ 0 0 0 CHAF1A|p.K459Rfs*51|1|0.22|ENSG00000167670|chr19:4423867-4423867|C/-|frameshift_variant;CHAF1A|p.A486Lfs*24|1|0.09|ENSG00000167670|chr19:4428742-4428742|G/-|frameshift_variant;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A;ENSG00000167670|ENST00000301280|CHAF1A CHAF1A|p.K459Rfs*51|1|0.22|ENSG00000167670|chr19:4423867-4423867|C/-|frameshift_variant CHAF1A|p.K459Rfs*51|1|0.22|ENSG00000167670|chr19:4423867-4423867|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7705078125 2 630.783147 1259.55174 NaN NaN NaN NaN NaN NaN NaN 172.7 1 167.82 167.32 168.32 -4.881 0 0 0 0.23379 1 34297 34297 5.2969 0 1 20255 509 13229 13234 20148 20148 -0.06765320257522944 IDMEILNDQL 10 Unmodified _IDMEILNDQL_ 0 0 0 REV__TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant REV__TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2998657226562 2 602.299921 1202.58529 NaN NaN NaN NaN NaN NaN NaN 120.11 1 115.47 114.97 115.97 -4.645 0 0 0 0.22588 1 23054 23054 8.7454 0 1 + 20256 17003 13230 13235 20149 20149 -0.007899900193251597 IDMERFKYPER 11 Unmodified _IDMERFKYPER_ 0 0 0 ENSG00000177283|ENST00000374694|FZD8 ENSG00000177283|ENST00000374694|FZD8 ENSG00000177283|ENST00000374694|FZD8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3729248046875 2 742.371743 1482.72893 NaN NaN NaN NaN NaN NaN NaN 116.92 1 116.92 116.42 117.42 0 0 0 0 0.23429 1 23027 23027 4.897 1.9018 1 20257 6504 13231 13236 20150 20150 0.006878568116462702 IDMERWTK 8 Unmodified _IDMERWTK_ 0 0 0 REV__DNAH5|p.I1855Sfs*16|1|0.33|ENSG00000039139|chr5:13841052-13841052|T/-|frameshift_variant REV__DNAH5|p.I1855Sfs*16|1|0.33|ENSG00000039139|chr5:13841052-13841052|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20123291015625 3 360.183181 1077.52771 -0.21929 -7.8984E-05 0.10706 3.8561E-05 -0.11223 -4.0424E-05 360.18313719056886 35.754 0.43899 35.754 35.416 35.855 0 19 12 2 0 0 0 0.9383 1 6517 6517 9.3831 0.63772 1 2808200 + 20258 13713 13232 13237 20151 20151 -0.007947874342335126 IDMRDRLPA 9 Unmodified _IDMRDRLPA_ 0 0 0 REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1 REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.791748046875 2 543.789858 1085.56516 NaN NaN NaN NaN NaN NaN NaN 169.82 1 164.94 164.44 165.44 -4.873 0 0 0 0.23508 1 33567 33567 11.64 0.52583 1 + 20259 25321 13233 13238 20152 20152 0.025803038314052174 IDMRKNIDFQY 11 Unmodified _IDMRKNIDFQY_ 0 0 0 tr|U7SXX4|U7SXX4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00916PE=3SV=1 tr|U7SXX4|U7SXX4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00916PE=3SV=1 tr|U7SXX4|U7SXX4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00916PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.771728515625 3 481.574738 1441.70238 -0.22055 -0.00010621 2.3408 0.0011273 2.1203 0.0010211 481.57600616908564 70.044 0.35741 70.044 69.814 70.171 0 14 9 2 0 0 0 0.96051 1 13544 13544 9.2438 7.3374 1 1678600 20260 26271 13234 13239 20153 20153 -0.0007983207970028161 IDNNCSDISD 10 Unmodified _IDNNCSDISD_ 0 0 0 REV__RAB11FIP4|p.D337N|1|0.09|ENSG00000131242|chr17:31523591-31523591|G/A|missense_variant REV__RAB11FIP4|p.D337N|1|0.09|ENSG00000131242|chr17:31523591-31523591|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7899780273438 2 548.216585 1094.41862 -0.32359 -0.0001774 -0.93786 -0.00051415 -1.2614 -0.00069155 548.216064213369 108.29 1.2182 103.97 103.59 104.8 -4.32 84 34 3 0 0 0 0.82238 1 21394 21394 12.241 3.4953 1 7927000 + 20261 24538 13235 13240 20154 20154 -0.12481462915025077 IDNNEYYY 8 Unmodified _IDNNEYYY_ 0 0 0 REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1 REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7899780273438 2 547.227279 1092.44001 -0.31463 -0.00017218 1.2518 0.00068503 0.93718 0.00051285 547.227996164349 108.33 1.3217 104.01 103.52 104.84 -4.32 97 37 3 0 0 0 0.38287 1 21394 21394 30.637 30.637 1 10654000 + 20262 25256 13236 13241 20155 20155 -0.10251709824001409 IDNNEYYY 8 Unmodified _IDNNEYYY_ 0 0 0 REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1 REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7808227539062 2 547.227279 1092.44001 -0.094554 -5.1742E-05 0.96558 0.00052839 0.87102 0.00047665 547.2278929337864 108.42 1.4095 104.01 103.54 104.95 -4.4121 120 40 4 0 0 0 0.72565 1 20865 20865 26.884 26.884 1 14421000 + 20263 25256 13236 13241 20156 20156 -0.10251709824001409 IDNVTRFD 8 Unmodified _IDNVTRFD_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25762939453125 2 490.245806 978.47706 0.06317 3.0969E-05 0.26078 0.00012785 0.32395 0.00015882 490.2460156680009 47.147 1.0397 44.297 43.651 44.69 -2.8492 42 29 2 0 0 0 0.36038 1 8805 8805 34.102 0 1 2040700 20264 5053 13237 13242 20157 20157 -0.013039934875678227 IDNVTRFD 8 Unmodified _IDNVTRFD_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2599182128906 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 46.587 1 43.722 43.222 44.222 -2.8653 0 0 0 0.17344 1 8473 8473 34.102 5.0209 1 20265 5053 13237 13242 20158 20158 -0.013039934875678227 IDPECCSTRG 10 Unmodified _IDPECCSTRG_ 0 0 0 REV__nc|ENSG00000112964|P10912-4|GHR REV__nc|ENSG00000112964|P10912-4|GHR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2748413085938 2 540.726066 1079.43758 0.29772 0.00016098 -1.226 -0.0006629 -0.92823 -0.00050192 540.7212335072427 136.46 0.16879 136.46 136.38 136.55 0 9 4 3 0 0 0 0.90598 1 27044 27044 5.7319 1.4026 1 3186700 + 20266 15320 13238 13243 20159 20159 -0.09896204824963206 IDPECTCPTC 10 Unmodified _IDPECTCPTC_ 0 0 0 ENST00000587500.5_1_19:10823370-10823943:+|nuORF;ENSG00000213339|ENST00000250237|QTRT1 ENST00000587500.5_1_19:10823370-10823943:+|nuORF ENST00000587500.5_1_19:10823370-10823943:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2649536132812 2 541.203578 1080.3926 NaN NaN NaN NaN NaN NaN NaN 158.82 1 158.82 158.32 159.32 0 0 0 0 0.22588 1 31890 31890 3.5965 1.019 1 20267 7691 13239 13244 20160 20160 -0.14437771682491984 IDPGCTHPPTG 11 Unmodified _IDPGCTHPPTG_ 0 0 0 REV__NDE1|p.L245Pfs*70|1|0.15|ENSG00000072864|chr16:15694188-15694189|-/C|frameshift_variant REV__NDE1|p.L245Pfs*70|1|0.15|ENSG00000072864|chr16:15694188-15694189|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7672119140625 2 547.750398 1093.48624 NaN NaN NaN NaN NaN NaN NaN 120.45 1 115.93 115.43 116.43 -4.5221 0 0 0 0.23018 1 23750 23750 8.1555 0.8663 1 + 20268 24344 13240 13245 20161 20161 -0.056759681935545814 IDPIELLLII 10 Unmodified _IDPIELLLII_ 0 0 0 REV__ENSG00000127412|ENST00000265310|TRPV5 REV__ENSG00000127412|ENST00000265310|TRPV5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3314819335938 2 576.367933 1150.72131 NaN NaN NaN NaN NaN NaN NaN 88.425 1 84.429 83.929 84.929 -3.9953 0 0 0 0.22588 1 16843 16843 3.5965 0 1 + 20269 15884 13241 13246 20162 20162 0.15198072553698694 IDPKNIPKYD 10 Unmodified _IDPKNIPKYD_ 0 0 0 ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2725219726562 2 601.824421 1201.63429 0.54194 0.00032615 -1.3268 -0.0007985 -0.78486 -0.00047235 601.8219468292831 161.74 0.4104 156.6 156.27 156.68 -5.1439 12 11 2 0 0 0 0.87565 1 31378 31378 15.248 6.5031 1 2756900 20270 4327 13242 13247 20163 20163 0.04153666331944805 IDPKSIGVGMY 11 Unmodified _IDPKSIGVGMY_ 0 0 0 tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1 tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1 tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.263427734375 2 590.307549 1178.60055 NaN NaN NaN NaN NaN NaN NaN 141.75 1 141.75 141.25 142.25 0 0 0 0 0.22683 1 28253 28253 10.8 2.644 1 20271 26312 13243 13248 20164 20164 0.018389215685829186 IDPRLGECY 9 Unmodified _IDPRLGECY_ 0 0 0 REV__ENSG00000070269|ENST00000261556|TMEM260 REV__ENSG00000070269|ENST00000261556|TMEM260 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2841186523438 2 533.255317 1064.49608 NaN NaN NaN NaN NaN NaN NaN 152.27 1 152.27 151.77 152.77 0 0 0 0 0.23508 1 30498 30498 7.2892 0.56607 1 + 20272 14254 13244 13249 20165 20165 -0.033587801881594714 IDPSKRFLA 9 Unmodified _IDPSKRFLA_ 0 0 0 REV__ENST00000477288.5_1_6:30882338-30882611:+|nuORF REV__ENST00000477288.5_1_6:30882338-30882611:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6957397460938 2 523.803291 1045.59203 NaN NaN NaN NaN NaN NaN NaN 165.53 1 160.55 160.05 161.05 -4.9811 0 0 0 0.22962 1 32362 32362 14.838 4.0143 1 + 20273 22117 13245 13250 20166 20166 0.0710573571425357 IDPYLPWPFL 10 Unmodified _IDPYLPWPFL_ 0 0 0 REV__ENST00000267812.3_1_15:44097132-44097216:-|nuORF REV__ENST00000267812.3_1_15:44097132-44097216:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7688598632812 2 630.8368 1259.65905 0.39557 0.00024954 -3.8104 -0.0024038 -3.4149 -0.0021542 630.8356356229774 128.49 0.1683 123.75 123.63 123.79 -4.7408 6 4 2 0 0 0 0.81109 1 24707 24707 13.042 0 1 1254800 + 20274 20258 13246 13251 20167 20167 0.03960346205326459 IDQLTVTENDY 11 Unmodified _IDQLTVTENDY_ 0 0 0 REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.236083984375 3 437.541869 1309.60378 0.16791 7.3469E-05 0.10881 4.7607E-05 0.27672 0.00012108 437.54224497771145 64.619 0.20831 61.161 61.089 61.297 -3.4581 8 5 2 0 0 0 0.9297 1 12073 12073 8.2864 0 1 548560 + 20275 16629 13247 13252 20168 20168 -0.03864156843746969 IDQPPLALLD 10 Unmodified _IDQPPLALLD_ 0 0 0 REV__nc|ENSG00000181038|Q86XA0-2|METTL23 REV__nc|ENSG00000181038|Q86XA0-2|METTL23 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7667236328125 2 547.808239 1093.60193 0.35379 0.00019381 -0.2515 -0.00013778 0.10229 5.6033E-05 547.8081895743832 102.02 0.71519 97.697 97.364 98.08 -4.3208 37 20 3 0 0 0 0.91049 1 19599 19599 5.2969 3.6443 1 1389300 + 20276 18713 13248 13253 20169 20169 0.05886878928936312 IDRELSKLL 9 Unmodified _IDRELSKLL_ 0 0 0 REV__nc|ENSG00000020577|Q9UPU9-2|SAMD4A REV__nc|ENSG00000020577|Q9UPU9-2|SAMD4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.772705078125 2 543.829506 1085.64446 0.32005 0.00017405 0.21503 0.00011694 0.53508 0.00029099 543.828894463621 113.16 0.57957 113.16 112.73 113.31 0 23 16 2 0 0 0 0.25183 1 22220 22220 34.402 0 1 1895400 + 20277 13980 13249 13254 20170 20170 0.10506274057183873 IDREYRLQYQW 11 Unmodified _IDREYRLQYQW_ 0 0 0 REV__TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant REV__TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6774291992188 3 523.931802 1568.77358 NaN NaN NaN NaN NaN NaN NaN 88.601 1 84.605 84.105 85.105 -3.9953 0 0 0 0.23698 1 16879 16879 1.1098 0.65524 1 + 20278 24770 13250 13255 20171 20171 0.011940039493310906 IDREYRLQYQW 11 Unmodified _IDREYRLQYQW_ 0 0 0 REV__TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant REV__TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6990966796875 3 523.931802 1568.77358 NaN NaN NaN NaN NaN NaN NaN 88.706 1 84.71 84.21 85.21 -3.9953 0 0 0 0.23698 1 16900 16900 0.45452 0 1 + 20279 24770 13250 13255 20172 20172 0.011940039493310906 IDREYRLQYQW 11 Unmodified _IDREYRLQYQW_ 0 0 0 REV__TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant REV__TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3939819335938 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 176.59 1 171.68 171.18 172.18 -4.9008 0 0 0 0.23698 1 35208 35208 1.3295 0.13619 1 + 20280 24770 13250 13255 20173 20173 0.011940039493310906 IDRFREDK 8 Unmodified _IDRFREDK_ 0 0 0 REV__tr|U7SSH1|U7SSH1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01266PE=4SV=1 REV__tr|U7SSH1|U7SSH1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01266PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2021179199219 3 360.192845 1077.55671 -0.22702 -8.1773E-05 0.43848 0.00015794 0.21145 7.6164E-05 360.1929382813883 64.249 0.72876 61.251 60.91 61.639 -2.9975 45 20 3 0 0 0 0.73833 1 12435 12435 8.7454 0.80001 1 3324600 + 20281 25057 13251 13256 20174 20174 0.02103073186435722 IDRFTLRKPD 10 Unmodified _IDRFTLRKPD_ 0 0 0 REV__tr|U7SV84|U7SV84_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01167PE=4SV=1 REV__tr|U7SV84|U7SV84_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01167PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7572631835938 2 630.856586 1259.69862 NaN NaN NaN NaN NaN NaN NaN 170.49 1 165.7 165.2 166.2 -4.7898 0 0 0 0.22569 1 34604 34604 15.739 1.3332 1 + 20282 25188 13252 13257 20175 20175 0.07915866208759326 IDRYKERD 8 Unmodified _IDRYKERD_ 0 0 0 ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant;ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12 ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7784423828125 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 158.73 1 153.46 152.96 153.96 -5.2748 0 0 0 0.23538 1 30809 30809 0.12286 0 1 20283 159 13253 13258 20176 20176 0.008587693238041538 IDSDDSQGTGR 11 Unmodified _IDSDDSQGTGR_ 0 0 0 REV__nc|ENSG00000205571|Q16637-4|SMN1 REV__nc|ENSG00000205571|Q16637-4|SMN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.328369140625 2 575.752181 1149.48981 0.21947 0.00012636 4.2237 0.0024318 4.4431 0.0025581 576.2564324805977 148.89 0.42072 143.73 143.36 143.78 -5.1557 17 11 2 0 0 0 0.93119 1 28829 28829 9.544 2.8208 1 2456000 + 20284 18271 13254 13259 20177 20177 -0.0789562688598835 IDSDEDMDTY 10 Unmodified _IDSDEDMDTY_ 0 0 0 REV__ENSG00000105198|ENST00000221797|LGALS13 REV__ENSG00000105198|ENST00000221797|LGALS13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2981567382812 2 602.221533 1202.42851 NaN NaN NaN NaN NaN NaN NaN 105.37 1 101.1 100.6 101.6 -4.2638 0 0 0 0.22588 1 20734 20734 3.9444 0 1 + 20285 14968 13255 13260 20178 20178 -0.16460319700286163 IDSDEDMDTY 10 Unmodified _IDSDEDMDTY_ 0 0 0 REV__ENSG00000105198|ENST00000221797|LGALS13 REV__ENSG00000105198|ENST00000221797|LGALS13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.286865234375 2 602.221533 1202.42851 NaN NaN NaN NaN NaN NaN NaN 127.37 1 122.75 122.25 123.25 -4.6172 0 0 0 0.22588 1 25118 25118 3.9444 1.6417 1 + 20286 14968 13255 13260 20179 20179 -0.16460319700286163 IDSEVKYVN 9 Unmodified _IDSEVKYVN_ 0 0 0 ENST00000356958.8_1_19:37656532-37656583:-|nuORF ENST00000356958.8_1_19:37656532-37656583:-|nuORF ENST00000356958.8_1_19:37656532-37656583:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.26171875 2 533.774396 1065.53424 -0.21641 -0.00011551 -0.01727 -9.2184E-06 -0.23368 -0.00012473 533.7743776597209 111.27 0.38451 106.85 106.61 107 -4.4231 18 10 2 0 0 0 0.66788 1 21952 21952 17.113 0.96379 1 2648600 20287 8973 13256 13261 20180 20180 0.004094289981594557 IDSGLLEY 8 Unmodified _IDSGLLEY_ 0 0 0 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.4037475585938 1 909.45639 908.449113 0.42936 0.00039049 -0.25408 -0.00023107 0.17529 0.00015941 909.45592781011 123.14 0.76331 118.55 118.2 118.96 -4.5926 51 21 3 0 0 0 0.039878 1 23710 23710 101.72 8.8998 1 12687000 + 20288 18440 13257 13262 20181 20181 -0.008773164676654233 IDSGLLEY 8 Unmodified _IDSGLLEY_ 0 0 0 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 909.45639 908.449113 0.51477 0.00046816 -0.28073 -0.00025531 0.23403 0.00021284 909.4559557395909 118.39 0.67215 118.39 118.04 118.71 0 -0.14831 2.5358E-05 NaN 101.72 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 12797000 + 20289 18440 13257 13262 -0.008773164676654233 IDSGLLEY 8 Unmodified _IDSGLLEY_ 0 0 0 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 909.45639 908.449113 0.39459 0.00035886 -0.21948 -0.00019961 0.17511 0.00015925 909.4560250048967 123.17 0.74917 118.59 118.21 118.95 -4.5757 0.051471 8.1062E-05 NaN 101.72 47 20 3 NaN NaN NaN NaN 0 NaN NaN 0 17063000 + 20290 18440 13257 13262 -0.008773164676654233 IDSGLLEY 8 Unmodified _IDSGLLEY_ 0 0 0 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 909.45639 908.449113 0.69462 0.00063172 -0.52434 -0.00047687 0.17027 0.00015486 909.4556574129834 123.36 0.88676 118.63 118.15 119.04 -4.731 0.086768 -0.0001962 NaN 101.72 52 24 3 NaN NaN NaN NaN 0 NaN NaN 0 12454000 + 20291 18440 13257 13262 -0.008773164676654233 IDSIIEHLR 9 Unmodified _IDSIIEHLR_ 0 0 0 ENSG00000165868|ENST00000369209|HSPA12A;HSPA12A|p.D650Tfs*11|1|0.25|ENSG00000165868|chr10:116674861-116674861|C/-|frameshift_variant ENSG00000165868|ENST00000369209|HSPA12A ENSG00000165868|ENST00000369209|HSPA12A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 548.22314453125 2 548.31148 1094.60841 NaN NaN NaN NaN NaN NaN NaN 166.81 1 162.02 161.52 162.52 -4.7898 0 0 0 0.19704 1 33560 33560 1.2148 0 1 20292 5669 13258 13263 20182 20182 0.06488816880323611 IDSIREIKI 9 Unmodified _IDSIREIKI_ 0 0 0 REV__tr|U7T4Y6|U7T4Y6_FUSNUL-threonylcarbamoyladenylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00240PE=3SV=1 REV__tr|U7T4Y6|U7T4Y6_FUSNUL-threonylcarbamoyladenylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00240PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7847290039062 2 543.829506 1085.64446 0.3672 0.0001997 -0.15491 -8.4246E-05 0.21229 0.00011545 543.8293668498056 110.79 0.97939 110.79 110.29 111.27 0 75 27 4 0 0 0 0.11828 1 21854 21854 49.554 3.8547 1 20147000 + 20293 25401 13259 13264 20183 20183 0.10506274057183873 IDSLPSPSSY 10 Unmodified _IDSLPSPSSY_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|92|3|sense L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|92|3|sense L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|92|3|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2618408203125 2 533.258579 1064.50261 NaN NaN NaN NaN NaN NaN NaN 132.74 1 128.1 127.6 128.6 -4.6399 0 0 0 0.22588 1 26168 26168 10.824 0.75 1 20294 12055 13260 13265 20184 20184 -0.02706563755782554 IDSSDETTESP 11 Unmodified _IDSSDETTESP_ 0 0 0 ENSG00000165156|ENST00000395571|ZHX1;ZHX1|p.T668Nfs*3|1|0.48|ENSG00000165156|chr8:123253944-123253945|-/T|frameshift_variant;ZHX1|p.T668Hfs*37|1|0.1|ENSG00000165156|chr8:123253945-123253945|T/-|frameshift_variant ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.262939453125 2 590.74623 1179.47791 0.72444 0.00042796 1.284 0.0007585 2.0084 0.0011865 590.7485206385217 125.72 0.14014 120.95 120.87 121.01 -4.7681 5 3 2 0 0 0 0.95894 1 24112 24112 1.0715 0 1 942440 20295 5603 13261 13266 20185 20185 -0.10465288419868557 IDSVWFVLS 9 Unmodified _IDSVWFVLS_ 0 0 0 REV__nc|ENSG00000166473|Q7Z442-6|PKD1L2 REV__nc|ENSG00000166473|Q7Z442-6|PKD1L2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2872314453125 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 117.61 1 113.2 112.7 113.7 -4.4088 0 0 0 0.23277 1 22635 22635 13.906 2.2658 1 + 20296 24150 13262 13267 20186 20186 0.024552247287829232 IDTELRKGY 9 Unmodified _IDTELRKGY_ 0 0 0 REV__ENST00000551270.1_1_12:104283206-104309165:-|nuORF REV__ENST00000551270.1_1_12:104283206-104309165:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.783203125 2 547.795663 1093.57677 0.3574 0.00019578 0.19386 0.0001062 0.55126 0.00030198 547.7954599037787 142.38 0.91884 137.48 136.96 137.88 -4.8982 43 25 3 0 0 0 0.60805 1 27371 27371 12.532 0 1 3278100 + 20297 22934 13263 13268 20187 20187 0.03372824126381602 IDTFYRCVDE 10 Unmodified _IDTFYRCVDE_ 0 0 0 REV__ENSG00000149260|ENST00000648180|CAPN5 REV__ENSG00000149260|ENST00000648180|CAPN5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7788696289062 2 630.781896 1259.54924 NaN NaN NaN NaN NaN NaN NaN 167.16 1 162.22 161.72 162.72 -4.948 0 0 0 0.22588 1 32854 32854 6.7232 0 1 + 20298 17004 13264 13269 20188 20188 -0.07015447196181412 IDTLLVKAG 9 Unmodified _IDTLLVKAG_ 0 0 0 tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1 tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1 tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 466.7909240722656 2 465.286943 928.559333 0.14975 6.9678E-05 -0.34759 -0.00016173 -0.19784 -9.2053E-05 465.2866942780589 165.11 0.41548 160.32 160.09 160.51 -4.7898 35 11 4 0 0 0 0.15889 1 33031 33031 37.075 6.3712 1 254100000 20299 26061 13265 13270 20189 20189 0.09219528591370363 IDTRDRFIQP 10 Unmodified _IDTRDRFIQP_ 0 0 0 REV__nc|ENSG00000140105|P23381-2|WARS1 REV__nc|ENSG00000140105|P23381-2|WARS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.767578125 2 630.838394 1259.66223 NaN NaN NaN NaN NaN NaN NaN 125.92 1 121.15 120.65 121.65 -4.7681 0 0 0 0.22588 1 24167 24167 5.7319 0.43497 1 + 20300 16560 13266 13271 20190 20190 0.04278989312047088 IDTTRLML 8 Unmodified _IDTTRLML_ 0 0 0 REV__FAM3B|p.K206Rfs*21|1|0.21|ENSG00000183844|chr21:41348720-41348720|A/-|frameshift_variant REV__FAM3B|p.K206Rfs*21|1|0.21|ENSG00000183844|chr21:41348720-41348720|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77008056640625 2 481.770603 961.526652 NaN NaN NaN NaN NaN NaN NaN 162.11 1 156.97 156.47 157.47 -5.1438 0 0 0 0.21486 1 31488 31488 12.532 0 1 + 20301 23516 13267 13272 20191 20191 0.04434998196870765 IDTVIHTY 8 Unmodified _IDTVIHTY_ 0 0 0 REV__SDAD1|p.K146N|1|0.08|ENSG00000198301|chr4:75975963-75975963|C/A|missense_variant REV__SDAD1|p.K146N|1|0.08|ENSG00000198301|chr4:75975963-75975963|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2530517578125 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 146.98 1 141.87 141.37 142.37 -5.1108 0 0 0 0.21486 1 28434 28434 9.3474 0 1 + 20302 19405 13268 13273 20192 20192 0.009820786605587273 IDTVTKVCEDG 11 Unmodified _IDTVTKVCEDG_ 0 0 0 REV__XIRP2|p.F1104Lfs*11|1|0.09|ENSG00000163092|chr2:167245228-167245229|-/ATCTTATCAATTGG|frameshift_variant REV__XIRP2|p.F1104Lfs*11|1|0.09|ENSG00000163092|chr2:167245228-167245229|-/ATCTTATCAATTGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2570190429688 2 590.281728 1178.5489 NaN NaN NaN NaN NaN NaN NaN 173.78 1 168.99 168.49 169.49 -4.7898 0 0 0 0.2321 1 35472 35472 6.6304 0.42459 1 + 20303 17549 13269 13274 20193 20193 -0.03322866916028033 IDVFGKYS 8 Unmodified _IDVFGKYS_ 0 0 0 REV__nc|ENSG00000249437|Q13075-2|NAIP REV__nc|ENSG00000249437|Q13075-2|NAIP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 103.48 1 103.48 102.98 103.98 0 0 0 0 0.21486 1 20335 20335 1.6526 0 1 + 20304 19821 13270 13275 20194 20194 0.003546936318684857 IDVGHSSWPL 10 Unmodified _IDVGHSSWPL_ 0 0 0 nc|ENSG00000289716|Q6ZNB5-2|XNDC1N;ENSG00000254469|ENST00000679412|XNDC1N;ENST00000528511.6_2_11:71595487-71639632:-|nuORF nc|ENSG00000289716|Q6ZNB5-2|XNDC1N nc|ENSG00000289716|Q6ZNB5-2|XNDC1N MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 555.7839965820312 2 555.782556 1109.55056 NaN NaN NaN NaN NaN NaN NaN 170.17 1 165.38 164.88 165.88 -4.7898 0 0 0 0.22588 1 34519 34519 7.2892 0.56607 1 20305 7924 13271 13276 20195 20195 0.00016554954913772235 IDVKNELTGY 10 Unmodified _IDVKNELTGY_ 0 0 0 REV__ENSG00000108021|ENST00000695737|TASOR2 REV__ENSG00000108021|ENST00000695737|TASOR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3314819335938 2 576.300778 1150.587 NaN NaN NaN NaN NaN NaN NaN 82.312 1 78.439 77.939 78.939 -3.8736 0 0 0 0.22588 1 15638 15638 7.2892 0.56607 1 + 20306 15106 13272 13277 20196 20196 0.01773387060939058 IDVQNRAY 8 Unmodified _IDVQNRAY_ 0 0 0 ENSG00000104522|ENST00000425753|GFUS ENSG00000104522|ENST00000425753|GFUS ENSG00000104522|ENST00000425753|GFUS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27392578125 2 489.753798 977.493044 0.42275 0.00020704 -1.2183 -0.00059668 -0.79557 -0.00038963 489.7531054072076 49.563 0.41855 49.563 49.3 49.719 0 15 11 2 0 0 0 0.96386 1 9385 9385 14.838 3.198 1 660240 20307 2241 13273 13278 20197 20197 0.0033971274932582674 IDVVDDYNI 9 Unmodified _IDVVDDYNI_ 0 0 0 REV__tr|U7SJ20|U7SJ20_FUSNUPepSYdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02065PE=4SV=1 REV__tr|U7SJ20|U7SJ20_FUSNUPepSYdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02065PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2844848632812 2 533.258579 1064.50261 NaN NaN NaN NaN NaN NaN NaN 132.83 1 128.19 127.69 128.69 -4.6399 0 0 0 0.23508 1 26188 26188 7.9102 0 1 + 20308 24903 13274 13279 20198 20198 -0.027065637558052913 IDVVNINE 8 Unmodified _IDVVNINE_ 0 0 0 tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1 tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1 tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2289123535156 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 90.053 1 86.275 85.775 86.775 -3.7779 0 0 0 0.22665 1 17233 17233 1.7423 0 1 20309 26111 13275 13280 20199 20199 0.010254882809135779 IDWACWPH 8 Unmodified _IDWACWPH_ 0 0 0 REV__ENST00000462708.1_1_6:30514431-30520307:-|nuORF REV__ENST00000462708.1_1_6:30514431-30520307:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.2221984863281 3 343.153334 1026.43817 NaN NaN NaN NaN NaN NaN NaN 62.747 1 59.786 59.286 60.286 -2.9614 0 0 0 0.21486 1 12111 12111 1.8442 0 1 + 20310 19550 13276 13281 20200 20200 -0.07398997322957257 IDWIFISGD 9 Unmodified _IDWIFISGD_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2610473632812 2 533.266207 1064.51786 NaN NaN NaN NaN NaN NaN NaN 133.37 1 128.73 128.23 129.23 -4.6399 0 0 0 0.23508 1 26293 26293 7.2892 0.56607 1 + 20311 18981 13277 13282 20201 20201 -0.01181652167952052 IDYCRSLSL 9 Unmodified _IDYCRSLSL_ 0 0 0 REV__nc|ENSG00000145604|Q13309-4|SKP2 REV__nc|ENSG00000145604|Q13309-4|SKP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5594177246094 3 357.18307 1068.52738 -0.24402 -8.7159E-05 0.72861 0.00026025 0.48459 0.00017309 357.1833819379681 31.961 0.55359 31.961 31.671 32.224 0 22 15 2 0 0 0 0.6797 1 5750 5750 7.609 0.50723 1 1501800 + 20312 16842 13278 13283 20202 20202 -0.004142071540627512 IDYCRSLSL 9 Unmodified _IDYCRSLSL_ 0 0 0 REV__nc|ENSG00000145604|Q13309-4|SKP2 REV__nc|ENSG00000145604|Q13309-4|SKP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.18307 1068.52738 -0.40863 -0.00014596 0.65555 0.00023415 0.24692 8.8194E-05 357.18321605332727 34.332 0.49332 32.014 31.767 32.26 -2.3175 -0.0088871 0.00015157 NaN 7.609 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 653550 + 20313 16842 13278 13283 -0.004142071540627512 IDYCRSLSL 9 Unmodified _IDYCRSLSL_ 0 0 0 REV__nc|ENSG00000145604|Q13309-4|SKP2 REV__nc|ENSG00000145604|Q13309-4|SKP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 357.18307 1068.52738 0.20066 7.1674E-05 -0.21098 -7.5358E-05 -0.010313 -3.6836E-06 357.18303596216555 34.244 0.55082 32.098 31.809 32.359 -2.1468 0.074582 -0.00077696 NaN 7.609 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 845880 + 20314 16842 13278 13283 -0.004142071540627512 IDYCRSLSL 9 Unmodified _IDYCRSLSL_ 0 0 0 REV__nc|ENSG00000145604|Q13309-4|SKP2 REV__nc|ENSG00000145604|Q13309-4|SKP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.18307 1068.52738 -0.316 -0.00011287 0.58698 0.00020966 0.27098 9.6788E-05 357.183282272622 34.235 0.52222 32.02 31.777 32.299 -2.2158 -0.0032779 7.8092E-05 NaN 7.609 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 871540 + 20315 16842 13278 13283 -0.004142071540627512 IDYIWGAFP 9 Unmodified _IDYIWGAFP_ 0 0 0 REV__SLC16A14|p.T467M|1|0.52|ENSG00000163053|chr2:230037513-230037513|G/A|missense_variant REV__SLC16A14|p.T467M|1|0.52|ENSG00000163053|chr2:230037513-230037513|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2713623046875 2 541.271293 1080.52803 NaN NaN NaN NaN NaN NaN NaN 121.47 1 121.47 120.97 121.97 0 0 0 0 0.19679 1 23944 23944 0.87518 0.46691 1 + 20316 17547 13279 13284 20203 20203 -0.009010444427076436 IDYLTQKRS 9 Unmodified _IDYLTQKRS_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39 ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2081604003906 3 375.208384 1122.60332 0.051707 1.9401E-05 -0.20865 -7.8288E-05 -0.15694 -5.8887E-05 375.2082743735327 52.657 0.42681 49.57 49.299 49.726 -3.0876 17 11 2 0 0 0 0.60489 1 9700 9700 2.4985 2.4692 1 1158500 20317 5759 13280 13285 20204 20204 0.04692513017721467 IEAEQAHY 8 Unmodified _IEAEQAHY_ 0 0 0 REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1 REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2356262207031 2 480.724707 959.43486 -0.25866 -0.00012435 0.33458 0.00016084 0.075912 3.6493E-05 480.72478887075135 80.847 0.94291 77.159 76.753 77.696 -3.6879 64 26 3 0 0 0 0.64227 1 15476 15476 19.439 1.2926 1 6815600 + 20318 24961 13281 13286 20205 20205 -0.0464796889596073 IEAGLELY 8 Unmodified _IEAGLELY_ 0 0 0 REV__ENSG00000198162|ENST00000356554|MAN1A2;REV__ENSG00000111885|ENST00000368468|MAN1A1 REV__ENSG00000111885|ENST00000368468|MAN1A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7687072753906 2 454.242201 906.469849 NaN NaN NaN NaN NaN NaN NaN 89.173 1 89.173 88.673 89.673 0 0 0 0 0.21323 1 17412 17412 14.582 4.3983 1 + 20319 19394;15269 13282 13287 20206 20206 0.012872739119984544 IEANSLLI 8 Unmodified _IEANSLLI_ 0 0 0 tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1 tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1 tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2187194824219 2 436.758018 871.501483 -0.19918 -8.6995E-05 -0.28378 -0.00012394 -0.48296 -0.00021094 436.75785706879185 75.027 0.66788 71.663 71.199 71.867 -3.3643 34 18 3 0 0 0 0.13517 2 14627 14627;14655 56.177 1.7277 1 3468500 20320 26099 13283 13288 20207;20208 20207 0.06059266665965879 IEANSLLI 8 Unmodified _IEANSLLI_ 0 0 0 tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1 tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1 tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22747802734375 2 436.758018 871.501483 0.095989 4.1924E-05 -0.58092 -0.00025372 -0.48493 -0.0002118 436.75768434453687 75.357 0.65562 71.634 71.377 72.033 -3.7227 34 18 3 0 0 0 0.17924 1 14235 14235 47.749 1.7277 1 2981900 20321 26099 13283 13288 20209 20209 0.06059266665965879 IEASAEEAT 9 Unmodified _IEASAEEAT_ 0 0 0 REV__ENSG00000189139|ENST00000340446|FSCB REV__ENSG00000189139|ENST00000340446|FSCB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23992919921875 2 460.714005 919.413456 0.23123 0.00010653 0.099585 4.588E-05 0.33081 0.00015241 460.71414905730825 35.477 0.55369 35.477 35.203 35.757 0 21 15 2 0 0 0 0.69192 1 6558 6558 6.2058 0 1 906070 + 20322 19197 13284 13289 20210 20210 -0.049473987153191956 IECELNQI 8 Unmodified _IECELNQI_ 0 0 0 REV__ENSG00000112182|ENST00000257749|BACH2 REV__ENSG00000112182|ENST00000257749|BACH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2356262207031 2 481.236593 960.458632 -0.052713 -2.5367E-05 -0.43948 -0.00021149 -0.49219 -0.00023686 481.2365356008939 89.076 0.45221 85.284 85.021 85.473 -3.7926 21 12 2 0 0 0 0.69031 1 17397 17397 15.847 0 1 1229900 + 20323 15282 13285 13290 20211 20211 -0.02317871453783482 IEDDYDSEFK 10 Unmodified _IEDDYDSEFK_ 0 0 0 tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1 tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1 tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7632446289062 2 630.766965 1259.51938 NaN NaN NaN NaN NaN NaN NaN 75.9 1 72.485 71.985 72.985 -3.4151 0 0 0 0.22588 1 14807 14807 6.7232 0.51738 1 20324 26258 13286 13291 20212 20212 -0.1000010766053947 IEDEFYDR 8 Unmodified _IEDEFYDR_ 0 0 0 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7932739257812 2 543.740554 1085.46655 NaN NaN NaN NaN NaN NaN NaN 163.06 1 157.87 157.37 158.37 -5.1878 0 0 0 0.21486 1 31706 31706 7.9102 0.62092 1 + 20325 25302 13287 13292 20213 20213 -0.07276020932658867 IEDESHWK 8 Unmodified _IEDESHWK_ 0 0 0 REV__ENSG00000269437|ENST00000602195|NXF2B REV__ENSG00000269437|ENST00000602195|NXF2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2788696289062 2 522.243264 1042.47197 0.015173 7.9242E-06 -0.14813 -7.7358E-05 -0.13295 -6.9433E-05 522.2430880744503 78.858 0.5527 75.182 74.924 75.476 -3.676 18 15 2 0 0 0 0.98792 1 15078 15078 5.2307 0 1 903540 + 20326 19912 13288 13293 20214 20214 -0.04756297350195382 IEDNNTLVF 9 Unmodified _IEDNNTLVF_ 0 0 0 ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENSG00000198242|ENST00000422514|RPL23A ENST00000498752.1_1_11:43740306-43740693:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2658081054688 2 532.766571 1063.51859 0.051192 2.7273E-05 4.311 0.0022968 4.3622 0.002324 532.7693737922502 130.9 0.14444 126.27 126.17 126.32 -4.6359 5 3 2 0 0 0 0.64382 1 25788 25788 10.074 0 1 562460 20327 10610 13289 13294 20215 20215 -0.010628575189002731 IEDTFQQY 8 Unmodified _IEDTFQQY_ 0 0 0 ENSG00000104626|ENST00000250263|ERI1;ERI1|p.V210Sfs*3|1|0.16|ENSG00000104626|chr8:9018334-9018335|-/A|frameshift_variant;ENST00000520332.5_1_8:8869238-8946074:+|nuORF ENSG00000104626|ENST00000250263|ERI1 ENSG00000104626|ENST00000250263|ERI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2733764648438 2 522.237647 1042.46074 0.39657 0.0002071 -0.59507 -0.00031077 -0.1985 -0.00010366 522.2372939713214 83.045 0.62416 83.045 82.702 83.326 0 22 17 2 0 0 0 8448 1 16132 16132 23.79 20.203 1 2126800 20328 2245 13290 13295 20216 20216 -0.05879119444330172 IEDTFQQY 8 Unmodified _IEDTFQQY_ 0 0 0 ENSG00000104626|ENST00000250263|ERI1;ERI1|p.V210Sfs*3|1|0.16|ENSG00000104626|chr8:9018334-9018335|-/A|frameshift_variant;ENST00000520332.5_1_8:8869238-8946074:+|nuORF ENSG00000104626|ENST00000250263|ERI1 ENSG00000104626|ENST00000250263|ERI1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2648315429688 2 522.237647 1042.46074 NaN NaN NaN NaN NaN NaN NaN 82.654 1 82.654 82.154 83.154 0 0 0 0 0.22847 1 16109 16109 11.999 10.257 1 20329 2245 13290 13295 20217 20217 -0.05879119444330172 IEDTFQQY 8 Unmodified _IEDTFQQY_ 0 0 0 ENSG00000104626|ENST00000250263|ERI1;ERI1|p.V210Sfs*3|1|0.16|ENSG00000104626|chr8:9018334-9018335|-/A|frameshift_variant;ENST00000520332.5_1_8:8869238-8946074:+|nuORF ENSG00000104626|ENST00000250263|ERI1 ENSG00000104626|ENST00000250263|ERI1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2648315429688 2 522.237647 1042.46074 NaN NaN NaN NaN NaN NaN NaN 82.673 1 82.673 82.173 83.173 0 0 0 0 0.21486 1 16112 16112 12.532 3.1841 1 20330 2245 13290 13295 20218 20218 -0.05879119444330172 IEDTFQQY 8 Unmodified _IEDTFQQY_ 0 0 0 ENSG00000104626|ENST00000250263|ERI1;ERI1|p.V210Sfs*3|1|0.16|ENSG00000104626|chr8:9018334-9018335|-/A|frameshift_variant;ENST00000520332.5_1_8:8869238-8946074:+|nuORF ENSG00000104626|ENST00000250263|ERI1 ENSG00000104626|ENST00000250263|ERI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2581787109375 2 522.237647 1042.46074 -0.28831 -0.00015057 0.45589 0.00023808 0.16757 8.7514E-05 522.2378039404838 87.172 0.81462 83.445 83.009 83.824 -3.727 39 22 2 0 0 0 0.66066 1 16995 16995 28.487 6.7402 1 2566100 20331 2245 13290 13295 20219 20219 -0.05879119444330172 IEDTFQQY 8 Unmodified _IEDTFQQY_ 0 0 0 ENSG00000104626|ENST00000250263|ERI1;ERI1|p.V210Sfs*3|1|0.16|ENSG00000104626|chr8:9018334-9018335|-/A|frameshift_variant;ENST00000520332.5_1_8:8869238-8946074:+|nuORF ENSG00000104626|ENST00000250263|ERI1 ENSG00000104626|ENST00000250263|ERI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.258544921875 2 522.237647 1042.46074 -0.40302 -0.00021047 0.48931 0.00025554 0.086288 4.5063E-05 522.2378126306078 87.412 0.78147 83.417 82.95 83.732 -3.9953 34 21 2 0 0 0 0.56049 1 16599 16599 24.674 1.9376 1 1985500 20332 2245 13290 13295 20220 20220 -0.05879119444330172 IEDTYTDTRM 10 Unmodified _IEDTYTDTRM_ 0 0 0 REV__nc|ENSG00000038427|P13611-3|VCAN REV__nc|ENSG00000038427|P13611-3|VCAN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7807006835938 2 622.77681 1243.53907 NaN NaN NaN NaN NaN NaN NaN 99.345 1 95.076 94.576 95.576 -4.2692 0 0 0 0.22588 1 18989 18989 6.2058 0 1 + 20333 14041 13291 13296 20221 20221 -0.07296054921425821 IEDVDPQMANL 11 Unmodified _IEDVDPQMANL_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.M4154Nfs*4|1|0.21|ENSG00000155657|chr2:178739821-178739822|-/T|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7593994140625 2 622.795003 1243.57545 NaN NaN NaN NaN NaN NaN NaN 169.67 1 169.67 169.17 170.17 0 0 0 0 0.23018 1 34834 34834 8.1555 0.54658 1 20334 5053;26536 13292 13297 20222 20222 -0.036591780246908456 IEDWIIEF 8 Unmodified _IEDWIIEF_ 0 0 0 ENST00000285518.10_1_8:6614917-6615124:+|nuORF ENST00000285518.10_1_8:6614917-6615124:+|nuORF ENST00000285518.10_1_8:6614917-6615124:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2734375 2 532.768583 1063.52261 0.08626 4.5957E-05 2.2 0.0011721 2.2862 0.001218 532.7696847299757 96.746 1.661 96.746 96.149 97.81 0 113 47 4 0 0 0 0.2118 3 19036 18988;19035;19036 44.407 12.29 1 19232000 20335 8458 13293 13298 20223;20224;20225 20225 -0.006607680251818238 IEDWIIEF 8 Unmodified _IEDWIIEF_ 0 0 0 ENST00000285518.10_1_8:6614917-6615124:+|nuORF ENST00000285518.10_1_8:6614917-6615124:+|nuORF ENST00000285518.10_1_8:6614917-6615124:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.273681640625 2 532.768583 1063.52261 0.090831 4.8392E-05 1.9626 0.0010456 2.0534 0.001094 532.76989652839 101.07 1.6981 96.91 95.975 97.673 -4.1594 122 48 4 0 0 0 0.23433 1 19806 19806 42.095 16.695 1 20176000 20336 8458 13293 13298 20226 20226 -0.006607680251818238 IEDWIIEF 8 Unmodified _IEDWIIEF_ 0 0 0 ENST00000285518.10_1_8:6614917-6615124:+|nuORF ENST00000285518.10_1_8:6614917-6615124:+|nuORF ENST00000285518.10_1_8:6614917-6615124:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2736206054688 2 532.768583 1063.52261 0.69094 0.00036811 1.3976 0.00074458 2.0885 0.0011127 532.7693638973252 101.19 1.2314 96.895 96.123 97.354 -4.297 105 35 5 0 0 0 0.31517 2 19326 19277;19326 36.044 3.9272 1 19394000 20337 8458 13293 13298 20227;20228 20228 -0.006607680251818238 IEDWIIEF 8 Unmodified _IEDWIIEF_ 0 0 0 ENST00000285518.10_1_8:6614917-6615124:+|nuORF ENST00000285518.10_1_8:6614917-6615124:+|nuORF ENST00000285518.10_1_8:6614917-6615124:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.273681640625 2 532.768583 1063.52261 0.4071 0.00021689 0.32696 0.00017419 0.73406 0.00039108 532.7690931245863 100.93 1.1426 96.941 96.069 97.212 -3.9895 82 32 4 0 0 0 0.23433 1 19311 19311 42.095 7.1625 1 21139000 20338 8458 13293 13298 20229 20229 -0.006607680251818238 IEDYTHRF 8 Unmodified _IEDYTHRF_ 0 0 0 ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI ENSG00000173611|ENST00000336505|SCAI ENSG00000173611|ENST00000336505|SCAI MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2611083984375 2 540.759081 1079.50361 0.20629 0.00011155 -0.066684 -3.606E-05 0.13961 7.5493E-05 540.7590240326981 54.884 0.59696 54.884 54.561 55.158 0 30 16 3 0 0 0 0.13517 2 10490 10449;10490 56.177 16.22 1 1738100 20339 6302 13294 13299 20230;20231 20231 -0.032963045962333126 IEDYTHRF 8 Unmodified _IEDYTHRF_ 0 0 0 ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI ENSG00000173611|ENST00000336505|SCAI ENSG00000173611|ENST00000336505|SCAI MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2718505859375 2 540.759081 1079.50361 0.10112 5.4681E-05 0.17269 9.3381E-05 0.2738 0.00014806 540.7589985317321 57.91 0.5283 54.999 54.674 55.203 -2.9105 31 14 3 0 0 0 0.17924 3 11085 11085;11093;11145 47.749 14.55 1 1812800 20340 6302 13294 13299 20232;20233;20234 20232 -0.032963045962333126 IEDYTHRF 8 Unmodified _IEDYTHRF_ 0 0 0 ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI ENSG00000173611|ENST00000336505|SCAI ENSG00000173611|ENST00000336505|SCAI MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2612915039062 2 540.759081 1079.50361 0.15558 8.4134E-05 -0.39461 -0.00021339 -0.23903 -0.00012926 540.7589938338284 58.134 0.52065 54.882 54.65 55.171 -3.2517 36 14 4 0 0 0 0.13517 2 10786 10786;10835 56.177 22.349 1 1502400 20341 6302 13294 13299 20235;20236 20235 -0.032963045962333126 IEDYTHRF 8 Unmodified _IEDYTHRF_ 0 0 0 ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI ENSG00000173611|ENST00000336505|SCAI ENSG00000173611|ENST00000336505|SCAI MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2722778320312 2 540.759081 1079.50361 0.1615 8.7331E-05 -0.24722 -0.00013368 -0.085718 -4.6353E-05 540.7589347604409 58.185 0.52075 54.98 54.709 55.23 -3.2052 28 14 3 0 0 0 0.17924 2 10835 10835;10857 47.749 15.443 1 1539900 20342 6302 13294 13299 20237;20238 20237 -0.032963045962333126 IEEGKIEYAEQ 11 Unmodified _IEEGKIEYAEQ_ 0 0 0 tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1 tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1 tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23590087890625 3 436.882114 1307.62451 -0.089284 -3.9007E-05 0.88304 0.00038578 0.79375 0.00034678 437.2178569863853 63.964 0.10802 60.966 60.874 60.982 -2.9975 4 2 2 0 0 0 0.96051 1 12350 12350 9.2438 0.95734 1 252010 20343 26074 13295 13300 20239 20239 -0.016995664640717223 IEEIIHFKNYY 11 Unmodified _IEEIIHFKNYY_ 0 0 0 nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;RNF216|p.R426Gfs*7|1|0.23|ENSG00000011275|chr7:5725381-5725381|T/-|frameshift_variant;RNF216|p.K414Nfs*19|1|0.24|ENSG00000011275|chr7:5725415-5725415|T/-|frameshift_variant;RNF216|p.S387Lfs*47|1|0.13|ENSG00000011275|chr7:5729492-5729493|-/GG|frameshift_variant nc|ENSG00000011275|Q9NWF9|RNF216 nc|ENSG00000011275|Q9NWF9|RNF216 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25860595703125 3 490.253882 1467.73982 NaN NaN NaN NaN NaN NaN NaN 134.95 1 130.13 129.63 130.63 -4.8175 0 0 0 0.22632 1 25981 25981 3.0723 2.9003 1 20344 1073 13296 13301 20240 20240 0.024655824576029772 IEEIRQKY 8 Unmodified _IEEIRQKY_ 0 0 0 ENST00000372801.5_1_20:43681806-43703814:+|nuORF;ENSG00000101109|ENST00000372806|STK4 ENST00000372801.5_1_20:43681806-43703814:+|nuORF ENST00000372801.5_1_20:43681806-43703814:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013244628906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 71.81 1 68.499 67.999 68.999 -3.3107 0 0 0 0.21486 1 13988 13988 3.5965 0 1 20345 2036 13297 13302 20241 20241 0.0461712798901317 IEEIRQKY 8 Unmodified _IEEIRQKY_ 0 0 0 ENST00000372801.5_1_20:43681806-43703814:+|nuORF;ENSG00000101109|ENST00000372806|STK4 ENST00000372801.5_1_20:43681806-43703814:+|nuORF ENST00000372801.5_1_20:43681806-43703814:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 72.108 1 68.57 68.07 69.07 -3.5385 0 0 0 0.21486 1 13677 13677 3.5965 0 1 20346 2036 13297 13302 20242 20242 0.0461712798901317 IEEKSGPAE 9 Unmodified _IEEKSGPAE_ 0 0 0 REV__ENST00000462218.1_1_1:157483533-157483629:-|nuORF REV__ENST00000462218.1_1_1:157483533-157483629:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2405090332031 2 480.237647 958.460741 -0.019667 -9.4446E-06 0.2131 0.00010234 0.19343 9.2894E-05 480.23774840718045 44.13 0.97803 41.364 40.722 41.7 -2.7661 74 27 5 0 0 0 0.38188 1 7959 7959 26.884 2.8631 1 8695400 + 20347 21900 13298 13303 20243 20243 -0.020151194443201348 IEEKTMEEEKL 11 Unmodified _IEEKTMEEEKL_ 0 0 0 REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2319030761719 3 460.230526 1377.66975 NaN NaN NaN NaN NaN NaN NaN 118.06 1 113.56 113.06 114.06 -4.502 0 0 0 0.22632 1 23275 23275 0.65807 0 1 + 20348 23389 13299 13304 20244 20244 -0.003980839932182789 IEEKYKLLPA 10 Unmodified _IEEKYKLLPA_ 0 0 0 REV__DNAH5|p.I1855Sfs*16|1|0.33|ENSG00000039139|chr5:13841052-13841052|T/-|frameshift_variant REV__DNAH5|p.I1855Sfs*16|1|0.33|ENSG00000039139|chr5:13841052-13841052|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2777099609375 2 602.352814 1202.69108 NaN NaN NaN NaN NaN NaN NaN 153.29 1 148.07 147.57 148.57 -5.2209 0 0 0 0.22588 1 29711 29711 6.7232 0 1 + 20349 13713 13300 13305 20245 20245 0.09783713888487 IEELARKNL 9 Unmodified _IEELARKNL_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A;ENST00000425020.6_1_8:17132428-17137812:+|nuORF nc|ENSG00000155975|Q8NEZ2-2|VPS37A nc|ENSG00000155975|Q8NEZ2-2|VPS37A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7760009765625 2 543.319306 1084.62406 0.28502 0.00015486 -0.19597 -0.00010648 0.08905 4.8382E-05 543.3188804783332 143.33 0.56075 138.68 138.37 138.93 -4.656 31 15 3 0 0 0 0.050568 2 28307 28307;28362 11.749 0 1 5738300 20350 5073 13301 13306 20246;20247 20246 0.08513103397376653 IEELGWRY 8 Unmodified _IEELGWRY_ 0 0 0 REV__tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1 REV__tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2828369140625 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 80.172 1 76.662 76.162 77.162 -3.5102 0 0 0 0.21323 1 15657 15657 14.582 1.0738 1 + 20351 24911 13302 13307 20248 20248 -0.0005883007379452465 IEERRARENRL 11 Unmodified _IEERRARENRL_ 0 0 0 nc|ENSG00000213213|Q5T5S1-4|CCDC183;ENST00000430612.5_1_9:139694306-139700853:+|nuORF;ENST00000371682.7_1_9:139690828-139700853:+|nuORF;nc|ENSG00000213213|Q5T5S1-3|CCDC183;ENST00000479371.5_1_9:139697227-139701184:+|nuORF;ENST00000415992.5_1_9:139693810-139699267:+|nuORF;nc|ENSG00000213213|Q5T5S1-2|CCDC183;ENSG00000213213|ENST00000338005|CCDC183 nc|ENSG00000213213|Q5T5S1-4|CCDC183 nc|ENSG00000213213|Q5T5S1-4|CCDC183 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7765197753906 3 481.270929 1440.79096 0.022533 1.0844E-05 1.6906 0.00081364 1.7131 0.00082448 481.271731199385 132.39 0.39346 127.75 127.48 127.88 -4.6399 17 10 2 0 0 0 0.79428 1 26072 26072 4.4062 1.9714 1 1969600 20352 9165 13303 13308 20249 20249 0.0881934427500255 IEEVLTPE 8 Unmodified _IEEVLTPE_ 0 0 0 ENSG00000100665|ENST00000557004|SERPINA4 ENSG00000100665|ENST00000557004|SERPINA4 ENSG00000100665|ENST00000557004|SERPINA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2436218261719 2 465.244941 928.475328 NaN NaN NaN NaN NaN NaN NaN 122.23 1 117.7 117.2 118.2 -4.5305 0 0 0 0.21486 1 23531 23531 7.9102 0.62092 1 20353 2005 13304 13309 20250 20250 0.00822952703822466 IEEWSHALYL 10 Unmodified _IEEWSHALYL_ 0 0 0 ENSG00000184898|ENST00000331426|RBM43 ENSG00000184898|ENST00000331426|RBM43 ENSG00000184898|ENST00000331426|RBM43 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7526245117188 2 630.816596 1259.61864 NaN NaN NaN NaN NaN NaN NaN 157.8 1 157.8 157.3 158.3 0 0 0 0 0.22588 1 31676 31676 7.2892 0 1 20354 6940 13305 13310 20251 20251 -0.0007862018508149049 IEFAKLNQ 8 Unmodified _IEFAKLNQ_ 0 0 0 REV__ENST00000604516.1_1_6:79944081-79944252:+|nuORF REV__ENST00000604516.1_1_6:79944081-79944252:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76947021484375 2 481.768917 961.523281 0.13029 6.2771E-05 -0.16552 -7.9744E-05 -0.03523 -1.6973E-05 481.7688038484064 125.68 1.0547 121.03 120.28 121.33 -4.6495 55 29 3 0 0 0 0.52597 1 24232 24232 26.884 0.61551 1 2258500 + 20355 23443 13306 13311 20252 20252 0.040980714145121055 IEFLALSNSSA 11 Unmodified _IEFLALSNSSA_ 0 0 0 nc|ENSG00000163576|Q8N7U6-3|EFHB nc|ENSG00000163576|Q8N7U6-3|EFHB nc|ENSG00000163576|Q8N7U6-3|EFHB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3211669921875 2 576.300778 1150.587 -1.3317 -0.00076744 -0.79167 -0.00045624 -2.1233 -0.0012237 576.3002849843597 17.244 0.28251 15.729 15.591 15.874 -1.5148 16 7 3 0 0 0 0.80681 1 2462 2462 2.7352 0 1 1348700 20356 12418 13307 13312 20253 20253 0.01773387060939058 IEFSSHQTGVV 11 Unmodified _IEFSSHQTGVV_ 0 0 0 ENSG00000176771|ENST00000409261|NCKAP5 ENSG00000176771|ENST00000409261|NCKAP5 ENSG00000176771|ENST00000409261|NCKAP5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2833251953125 2 602.303852 1202.59315 NaN NaN NaN NaN NaN NaN NaN 27.48 1 25.724 25.224 26.224 -1.7552 0 0 0 0.23018 1 4601 4601 8.1555 0 1 20357 6482 13308 13313 20254 20254 -4.094707514923357E-05 IEFVADRL 8 Unmodified _IEFVADRL_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENST00000426279.1_1_X:44168653-44169127:-|nuORF;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78131103515625 2 481.768917 961.523281 0.17268 8.3191E-05 -0.21805 -0.00010505 -0.045376 -2.1861E-05 481.76878254122886 125.56 0.6113 120.96 120.61 121.22 -4.5984 28 16 2 0 0 0 0.082857 2 24750 24723;24750 66.457 24.617 1 3103200 20358 6180 13309 13314 20255;20256 20256 0.04098071414523474 IEFVADRL 8 Unmodified _IEFVADRL_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENST00000426279.1_1_X:44168653-44169127:-|nuORF;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76910400390625 2 481.768917 961.523281 0.34575 0.00016657 -0.03571 -1.7204E-05 0.31004 0.00014937 481.76880579294107 125.76 0.62724 120.99 120.65 121.28 -4.7681 38 17 3 0 0 0 0.058815 2 24146 24101;24146 85.642 29.464 1 2637800 20359 6180 13309 13314 20257;20258 20258 0.04098071414523474 IEFVADRL 8 Unmodified _IEFVADRL_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENST00000426279.1_1_X:44168653-44169127:-|nuORF;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7688293457031 2 481.768917 961.523281 0.13029 6.2771E-05 -0.16552 -7.9744E-05 -0.03523 -1.6973E-05 481.7688038484064 125.68 1.0547 121.03 120.28 121.33 -4.6495 55 29 3 0 0 0 0.16845 2 24186 24139;24186 49.554 16.769 1 2258500 20360 6180 13309 13314 20259;20260 20260 0.04098071414523474 IEGGTVLAL 9 Unmodified _IEGGTVLAL_ 0 0 0 REV__nc|ENSG00000166226|P78371-2|CCT2 REV__nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21673583984375 2 436.758018 871.501483 0.16032 7.0022E-05 -0.18073 -7.8936E-05 -0.02041 -8.9143E-06 436.7578935074352 64.371 0.70605 60.913 60.591 61.297 -3.4581 45 19 3 0 0 0 0.029966 2 12021 12021;12073 81.613 7.1903 1 5721000 + 20361 17832 13310 13315 20261;20262 20261 0.060592666659431416 IEGIKRRIRNK 11 Unmodified _IEGIKRRIRNK_ 0 0 0 TOPAZ1|p.N1080Mfs*9|1|0.27|ENSG00000173769|chr3:44269288-44269288|A/-|frameshift_variant;ENSG00000173769|ENST00000309765|TOPAZ1;TOPAZ1|p.K985Sfs*8|1|0.12|ENSG00000173769|chr3:44256274-44256274|A/-|frameshift_variant;TOPAZ1|p.P1029Tfs*26|1|0.18|ENSG00000173769|chr3:44267057-44267058|-/A|frameshift_variant TOPAZ1|p.N1080Mfs*9|1|0.27|ENSG00000173769|chr3:44269288-44269288|A/-|frameshift_variant TOPAZ1|p.N1080Mfs*9|1|0.27|ENSG00000173769|chr3:44269288-44269288|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.53936767578125 3 461.628276 1381.863 NaN NaN NaN NaN NaN NaN NaN 134.41 1 129.59 129.09 130.09 -4.8175 0 0 0 0.22632 1 25876 25876 1.2503 0 1 20362 6308 13311 13316 20263 20263 0.18734303419341813 IEGILATFV 9 Unmodified _IEGILATFV_ 0 0 0 REV__C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant REV__C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78302001953125 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 138.34 1 133.41 132.91 133.91 -4.9216 0 0 0 0.19652 1 26599 26599 0.029283 0 1 + 20363 13224 13312 13317 20264 20264 0.06612126217100922 IEGLLNIAWGL 11 Unmodified _IEGLLNIAWGL_ 0 0 0 ENST00000462822.1_1_10:45477980-45479333:+|nuORF;ENST00000472561.5_1_10:45467281-45480357:+|nuORF;nc|ENSG00000107551|Q9H2L5-4|RASSF4;ENSG00000107551|ENST00000340258|RASSF4;nc|ENSG00000107551|Q9H2L5-2|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF ENST00000462822.1_1_10:45477980-45479333:+|nuORF ENST00000462822.1_1_10:45477980-45479333:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.2613220214844 3 400.23253 1197.67576 -0.23589 -9.4412E-05 0.28968 0.00011594 0.053792 2.1529E-05 400.23309822015176 85.419 0.77493 81.755 81.297 82.072 -3.6641 27 21 2 0 0 0 0.96201 1 16729 16729 1.1098 0.96986 1 1172600 20364 2426 13313 13318 20265 20265 0.0848284709127256 IEGSNATAPG 10 Unmodified _IEGSNATAPG_ 0 0 0 ENST00000420329.6_1_15:91185432-91185957:+|nuORF ENST00000420329.6_1_15:91185432-91185957:+|nuORF ENST00000420329.6_1_15:91185432-91185957:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.24151611328125 2 458.722164 915.429775 0.10501 4.817E-05 -1.8447 -0.00084622 -1.7397 -0.00079805 458.7219590942764 89.795 0.51915 89.795 89.666 90.185 0 19 14 2 0 0 0 0.86261 1 17535 17535 6.7232 1.4925 1 985740 20365 9659 13314 13319 20266 20266 -0.03132272758580257 IEGTPKLD 8 Unmodified _IEGTPKLD_ 0 0 0 REV__ENSG00000174839|ENST00000311128|DENND6A REV__ENSG00000174839|ENST00000311128|DENND6A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2157287597656 2 436.739825 871.465098 NaN NaN NaN NaN NaN NaN NaN 115.57 1 110.99 110.49 111.49 -4.5815 0 0 0 0.21486 1 22187 22187 8.5933 0 1 + 20366 13665 13315 13320 20267 20267 0.024223897692422725 IEGYDYDDY 9 Unmodified _IEGYDYDDY_ 0 0 0 REV__ENST00000520364.1_1_6:109309715-109314184:-|nuORF REV__ENST00000520364.1_1_6:109309715-109314184:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.314697265625 2 576.722027 1151.4295 NaN NaN NaN NaN NaN NaN NaN 109.14 1 104.69 104.19 105.19 -4.4518 0 0 0 0.23508 1 20946 20946 4.3292 0 1 + 20367 14410 13316 13321 20268 20268 -0.14015737269096462 IEHDVVMKA 9 Unmodified _IEHDVVMKA_ 0 0 0 ENST00000588858.5_1_19:13886394-13889009:+|nuORF;ENSG00000104979|ENST00000588234|C19orf53 ENST00000588858.5_1_19:13886394-13889009:+|nuORF ENST00000588858.5_1_19:13886394-13889009:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.8521728515625 3 347.851432 1040.53247 -0.58238 -0.00020258 0.4605 0.00016018 -0.12188 -4.2396E-05 347.85154471920697 38.955 0.51883 36.406 36.123 36.642 -2.5491 34 14 3 0 0 0 0.25976 1 7199 7199 17.113 16.99 1 1647500 20368 2275 13317 13322 20269 20269 0.013820967085621305 IEHDVVMKA 9 Unmodified _IEHDVVMKA_ 0 0 0 ENST00000588858.5_1_19:13886394-13889009:+|nuORF;ENSG00000104979|ENST00000588234|C19orf53 ENST00000588858.5_1_19:13886394-13889009:+|nuORF ENST00000588858.5_1_19:13886394-13889009:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 347.851432 1040.53247 -0.27753 -9.6539E-05 0.14064 4.8922E-05 -0.13689 -4.7617E-05 347.85144456216403 36.403 0.38417 36.403 36.248 36.632 0 -0.035705 -3.1016E-05 NaN 17.113 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1892100 20369 2275 13317 13322 0.013820967085621305 IEHDVVMKA 9 Unmodified _IEHDVVMKA_ 0 0 0 ENST00000588858.5_1_19:13886394-13889009:+|nuORF;ENSG00000104979|ENST00000588234|C19orf53 ENST00000588858.5_1_19:13886394-13889009:+|nuORF ENST00000588858.5_1_19:13886394-13889009:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 347.851432 1040.53247 0.042128 1.4654E-05 -0.14308 -4.977E-05 -0.10095 -3.5116E-05 347.85133408761635 38.934 0.45547 36.492 36.16 36.615 -2.4419 0.053085 -0.00032709 NaN 17.113 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2171500 20370 2275 13317 13322 0.013820967085621305 IEHDVVMKA 9 Unmodified _IEHDVVMKA_ 0 0 0 ENST00000588858.5_1_19:13886394-13889009:+|nuORF;ENSG00000104979|ENST00000588234|C19orf53 ENST00000588858.5_1_19:13886394-13889009:+|nuORF ENST00000588858.5_1_19:13886394-13889009:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 347.851432 1040.53247 -0.51891 -0.0001805 0.33391 0.00011615 -0.185 -6.4351E-05 348.1858121424332 38.858 0.45661 36.454 36.162 36.619 -2.4049 0.01489 0.00017068 NaN 17.113 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 975980 20371 2275 13317 13322 0.013820967085621305 IEHELSIQP 9 Unmodified _IEHELSIQP_ 0 0 0 REV__ENST00000527435.5_1_11:62529161-62533976:+|nuORF REV__ENST00000527435.5_1_11:62529161-62533976:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2656860351562 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 154.3 1 149.08 148.58 149.58 -5.2209 0 0 0 0.20628 1 29914 29914 21.747 1.293 1 + 20372 22706 13318 13323 20270 20270 0.020531352350417365 IEHGIITNW 9 Unmodified _IEHGIITNW_ 0 0 0 ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF ENSG00000159251|ENST00000290378|ACTC1;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF ENST00000473016.1_1_2:74120109-74129648:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.270751953125 2 541.785099 1081.55564 0.64007 0.00034678 -0.78318 -0.00042432 -0.14311 -7.7536E-05 541.7846701807517 104.3 0.79195 104.3 103.93 104.72 0 56 22 3 0 0 0 0.10047 1 20533 20533 62.573 28.47 1 10267000 20373 4508;10233;10492 13319 13324 20271 20271 0.01812858817538654 IEHGIITNW 9 Unmodified _IEHGIITNW_ 0 0 0 ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF ENSG00000159251|ENST00000290378|ACTC1;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF ENST00000473016.1_1_2:74120109-74129648:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2606811523438 2 541.785099 1081.55564 -0.27897 -0.00015114 0.093562 5.069E-05 -0.1854 -0.00010045 541.7851763368318 108.66 0.83311 104.34 103.94 104.77 -4.32 71 23 4 0 0 0 0.42289 1 21365 21365 32.305 15.363 1 14030000 20374 4508;10233;10492 13319 13324 20272 20272 0.01812858817538654 IEHGIITNW 9 Unmodified _IEHGIITNW_ 0 0 0 ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF ENSG00000159251|ENST00000290378|ACTC1;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF ENST00000473016.1_1_2:74120109-74129648:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2626953125 2 541.785099 1081.55564 -0.087854 -4.7598E-05 -0.036722 -1.9896E-05 -0.12458 -6.7493E-05 541.7850078735863 108.7 0.86224 104.25 103.78 104.64 -4.4518 63 24 4 0 0 0 0.58699 1 20827 20827 25.399 16.806 1 9395400 20375 4508;10233;10492 13319 13324 20273 20273 0.01812858817538654 IEHGIITNW 9 Unmodified _IEHGIITNW_ 0 0 0 ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF ENSG00000159251|ENST00000290378|ACTC1;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF ENST00000473016.1_1_2:74120109-74129648:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2777709960938 2 541.785099 1081.55564 0.76329 0.00041354 -1.0527 -0.00057033 -0.2894 -0.00015679 541.7846384872206 108.41 0.94003 104.27 103.88 104.82 -4.135 74 26 4 0 0 0 0.23744 1 20920 20920 52.268 18.166 1 7922400 20376 4508;10233;10492 13319 13324 20274 20274 0.01812858817538654 IEHGNILQY 9 Unmodified _IEHGNILQY_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78076171875 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 116.57 1 111.99 111.49 112.49 -4.5815 0 0 0 0.22621 1 22368 22368 15.847 0 1 20377 7627 13320 13325 20275 20275 0.011205549549231364 IEHKLLTPD 9 Unmodified _IEHKLLTPD_ 0 0 0 ENST00000469886.5_1_22:37678610-37693724:+|nuORF;ENST00000462927.5_1_22:37678610-37705275:+|nuORF;ENSG00000100055|ENST00000248901|CYTH4 ENST00000469886.5_1_22:37678610-37693724:+|nuORF ENST00000469886.5_1_22:37678610-37693724:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2745971679688 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 146.13 1 141.44 140.94 141.94 -4.6868 0 0 0 0.23508 1 28978 28978 9.3831 0.035688 1 20378 1924 13321 13326 20276 20276 0.05690012131753974 IEHNRDLF 8 Unmodified _IEHNRDLF_ 0 0 0 ERBB4|p.S75F|1|0.44|ENSG00000178568|chr2:212124762-212124762|G/A|missense_variant ERBB4|p.S75F|1|0.44|ENSG00000178568|chr2:212124762-212124762|G/A|missense_variant ERBB4|p.S75F|1|0.44|ENSG00000178568|chr2:212124762-212124762|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.268310546875 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 167.77 1 162.88 162.38 163.38 -4.8916 0 0 0 0.21039 1 33034 33034 16.942 3.4344 1 20379 11781 13322 13327 20277 20277 3.401640651645721E-05 IEHTKGLELE 10 Unmodified _IEHTKGLELE_ 0 0 0 REV__ENSG00000136492|ENST00000259008|BRIP1 REV__ENSG00000136492|ENST00000259008|BRIP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 390.2123718261719 3 390.211794 1167.61355 NaN NaN NaN NaN NaN NaN NaN 113.09 1 108.64 108.14 109.14 -4.4539 0 0 0 0.22588 1 22284 22284 9.544 3.3521 1 + 20380 16333 13323 13328 20278 20278 0.03645075952294974 IEIDLELRS 9 Unmodified _IEIDLELRS_ 0 0 0 REV__nc|ENSG00000214686|A8MYZ5|IQCF6 REV__nc|ENSG00000214686|A8MYZ5|IQCF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7791748046875 2 544.303321 1086.59209 0.3375 0.0001837 -2.7979 -0.0015229 -2.4604 -0.0013392 544.3013763953608 144.62 0.21164 144.62 144.47 144.68 0 8 5 2 0 0 0 0.7906 1 28905 28905 8.7454 0.58988 1 3229100 + 20381 19672 13324 13329 20279 20279 0.05225690923566617 IEIHEDSEEGC 11 Unmodified _IEIHEDSEEGC_ 0 0 0 nc|ENSG00000091622|Q9BZ71-3|PITPNM3;ENSG00000091622|ENST00000262483|PITPNM3 nc|ENSG00000091622|Q9BZ71-3|PITPNM3 nc|ENSG00000091622|Q9BZ71-3|PITPNM3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7581787109375 2 630.756075 1259.4976 NaN NaN NaN NaN NaN NaN NaN 164.12 1 159.08 158.58 159.58 -5.0446 0 0 0 0.2367 1 31980 31980 2.9952 0.69251 1 20382 1813 13325 13330 20280 20280 -0.12177235680724152 IEIHEDSEEGC 11 Unmodified _IEIHEDSEEGC_ 0 0 0 nc|ENSG00000091622|Q9BZ71-3|PITPNM3;ENSG00000091622|ENST00000262483|PITPNM3 nc|ENSG00000091622|Q9BZ71-3|PITPNM3 nc|ENSG00000091622|Q9BZ71-3|PITPNM3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7669067382812 2 630.756075 1259.4976 NaN NaN NaN NaN NaN NaN NaN 164.18 1 159.14 158.64 159.64 -5.0446 0 0 0 0.2367 1 31999 31999 2.9952 0.93549 1 20383 1813 13325 13330 20281 20281 -0.12177235680724152 IEIHTPTWM 9 Unmodified _IEIHTPTWM_ 0 0 0 REV__ENST00000537591.5_1_6:24687666-24687777:+|nuORF REV__ENST00000537591.5_1_6:24687666-24687777:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 376.09356689453125 3 376.523315 1126.54812 -2.293 -0.00086338 -0.33749 -0.00012707 -2.6305 -0.00099045 376.5231565770621 13.2 0.16833 12.08 11.991 12.16 -1.1206 10 4 3 0 0 0 0.884 1 1635 1635 0.26902 0.26902 1 543060 + 20384 22827 13326 13331 20282 20282 -0.01009616774422284 IEIKIVRP 8 Unmodified _IEIKIVRP_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9 nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 484.4556579589844 2 484.318577 966.622602 NaN NaN NaN NaN NaN NaN NaN 131.56 1 126.92 126.42 127.42 -4.6359 0 0 0 0.23782 1 25926 25926 0.12286 0 1 20385 3930 13327 13332 20283 20283 0.13795514099274442 IEIKRRRRRRQ 11 Unmodified _IEIKRRRRRRQ_ 0 0 0 REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 784.0004272460938 2 783.998023 1565.98149 NaN NaN NaN NaN NaN NaN NaN 168 1 163.21 162.71 163.71 -4.7898 0 0 0 0.23698 1 33932 33932 0.30703 0.30703 1 + 20386 13404 13328 13333 20284 20284 0.2211409544770504 IEINFPAEY 9 Unmodified _IEINFPAEY_ 0 0 0 nc|ENSG00000185651|P68036-2|UBE2L3;ENSG00000236444|ENST00000635918|UBE2L5;ENSG00000185651|ENST00000342192|UBE2L3;ENST00000496722.1_1_22:21922618-21975955:+|nuORF;nc|ENSG00000185651|P68036-3|UBE2L3 nc|ENSG00000185651|P68036-2|UBE2L3 nc|ENSG00000185651|P68036-2|UBE2L3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.770751953125 2 548.27149 1094.52843 0.33507 0.00018371 -1.227 -0.00067274 -0.89195 -0.00048903 548.7716889035405 157.04 0.82764 157.04 156.52 157.34 0 49 23 3 0 0 0 0.30909 1 31514 31514 49.554 29.101 1 5717200 20387 7006 13329 13334 20285 20285 -0.015056695135399423 IEINFPAEY 9 Unmodified _IEINFPAEY_ 0 0 0 nc|ENSG00000185651|P68036-2|UBE2L3;ENSG00000236444|ENST00000635918|UBE2L5;ENSG00000185651|ENST00000342192|UBE2L3;ENST00000496722.1_1_22:21922618-21975955:+|nuORF;nc|ENSG00000185651|P68036-3|UBE2L3 nc|ENSG00000185651|P68036-2|UBE2L3 nc|ENSG00000185651|P68036-2|UBE2L3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7864990234375 2 548.27149 1094.52843 0.37529 0.00020576 -2.3638 -0.001296 -1.9885 -0.0010902 548.7705284529533 162.39 0.65939 157.6 157.17 157.83 -4.7898 35 18 3 0 0 0 0.27332 1 32308 32308 51.63 31.176 1 6168400 20388 7006 13329 13334 20286 20286 -0.015056695135399423 IEIRRRRTLYR 11 Unmodified _IEIRRRRTLYR_ 0 0 0 REV__ENSG00000198353|ENST00000430889|HOXC4 REV__ENSG00000198353|ENST00000430889|HOXC4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 511.3134765625 3 511.31458 1530.92191 NaN NaN NaN NaN NaN NaN NaN 165.87 1 165.87 165.37 166.37 0 0 0 0 0.22632 1 33717 33717 0.58532 0 1 + 20389 19407 13330 13335 20287 20287 0.17768779713696858 IEIYVVAPATK 11 Unmodified _IEIYVVAPATK_ 0 0 0 REV__ENST00000465521.1_1_2:74757592-74758334:+|nuORF REV__ENST00000465521.1_1_2:74757592-74758334:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2938842773438 2 602.352814 1202.69108 NaN NaN NaN NaN NaN NaN NaN 172.76 1 167.88 167.38 168.38 -4.881 0 0 0 0.22501 1 34314 34314 12.241 2.8575 1 + 20390 15422 13331 13336 20288 20288 0.09783713888464263 IEKAGNSSN 9 Unmodified _IEKAGNSSN_ 0 0 0 ENSG00000149177|ENST00000418331|PTPRJ;nc|ENSG00000149177|Q12913-3|PTPRJ ENSG00000149177|ENST00000418331|PTPRJ ENSG00000149177|ENST00000418331|PTPRJ MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.16497802734375 3 307.154168 918.440674 NaN NaN NaN NaN NaN NaN NaN 113.97 1 109.51 109.01 110.01 -4.4594 0 0 0 0.23508 1 22457 22457 2.7352 0.89096 1 20391 4772 13332 13337 20289 20289 -0.021808703842793875 IEKDVDEAY 9 Unmodified _IEKDVDEAY_ 0 0 0 ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000551916.1_1_12:62273577-62274426:+|nuORF ENST00000430398.2_1_1:73570714-73571443:+|nuORF ENST00000430398.2_1_1:73570714-73571443:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2589721679688 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 151.6 1 146.37 145.87 146.87 -5.2365 0 0 0 0.23508 1 29386 29386 11.64 4.3511 1 20392 9776 13333 13338 20290 20290 -0.03950867618414122 IEKEGCLRF 9 Unmodified _IEKEGCLRF_ 0 0 0 ENST00000518622.5_1_19:48752807-48752900:-|nuORF ENST00000518622.5_1_19:48752807-48752900:-|nuORF ENST00000518622.5_1_19:48752807-48752900:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7874145507812 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 153.37 1 148.15 147.65 148.65 -5.2209 0 0 0 0.23508 1 29726 29726 11.64 2.2929 1 20393 10807 13334 13339 20291 20291 0.015977855998926316 IEKEIKDVF 9 Unmodified _IEKEIKDVF_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2161560058594 3 374.213135 1119.61758 -0.28025 -0.00010487 0.1848 6.9156E-05 -0.095445 -3.5717E-05 374.21314330917954 85.533 0.71378 81.869 81.466 82.18 -3.6641 60 19 4 0 0 0 0.058839 1 16695 16695 67.187 38.106 1 14091000 20394 1406 13335 13340 20292 20292 0.06255165445986677 IEKEIKDVF 9 Unmodified _IEKEIKDVF_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2156677246094 3 374.213135 1119.61758 0.23466 8.7813E-05 -0.32199 -0.00012049 -0.087327 -3.2679E-05 374.21294595752136 85.746 0.69958 81.795 81.422 82.122 -3.9503 57 19 4 0 0 0 0.10537 3 16325 16279;16325;16327 40.317 17.581 1 12458000 20395 1406 13335 13340 20293;20294;20295 20294 0.06255165445986677 IEKEIKDVF 9 Unmodified _IEKEIKDVF_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21630859375 3 374.213135 1119.61758 -0.6466 -0.00024197 0.58006 0.00021707 -0.066541 -2.49E-05 374.2133342340528 85.533 0.72482 81.821 81.463 82.188 -3.7117 62 20 4 0 0 0 0.039965 2 16355 16315;16355 74.094 43.39 1 18524000 20396 1406 13335 13340 20296;20297 20297 0.06255165445986677 IEKEIKDVF 9 Unmodified _IEKEIKDVF_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 374.213135 1119.61758 0.10173 3.8069E-05 -0.23662 -8.8547E-05 -0.13489 -5.0478E-05 374.212994981883 81.996 0.6775 81.996 81.649 82.327 0 0.12576 -0.00037731 NaN 74.094 46 18 3 NaN NaN NaN NaN 0 NaN NaN 0 10556000 20397 1406 13335 13340 0.06255165445986677 IEKGMVRRY 9 Unmodified _IEKGMVRRY_ 0 0 0 REV__nc|ENSG00000275743|A0A5B0|TRBV14 REV__nc|ENSG00000275743|A0A5B0|TRBV14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3195190429688 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 83.392 1 79.518 79.018 80.018 -3.8736 0 0 0 0.19632 1 15839 15839 0.073264 0 1 + 20398 24308 13336 13341 20298 20298 0.058808696194319054 IEKGMVRRY 9 Unmodified _IEKGMVRRY_ 0 0 0 REV__nc|ENSG00000275743|A0A5B0|TRBV14 REV__nc|ENSG00000275743|A0A5B0|TRBV14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3208618164062 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 106.94 1 102.53 102.03 103.03 -4.4121 0 0 0 0.19638 1 20516 20516 0.40827 0.28045 1 + 20399 24308 13336 13341 20299 20299 0.058808696194319054 IEKGMVRRY 9 Unmodified _IEKGMVRRY_ 0 0 0 REV__nc|ENSG00000275743|A0A5B0|TRBV14 REV__nc|ENSG00000275743|A0A5B0|TRBV14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3223876953125 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 107.19 1 102.77 102.27 103.27 -4.4121 0 0 0 0.18525 1 20563 20563 0.40827 0 1 + 20400 24308 13336 13341 20300 20300 0.058808696194319054 IEKGMVRRY 9 Unmodified _IEKGMVRRY_ 0 0 0 REV__nc|ENSG00000275743|A0A5B0|TRBV14 REV__nc|ENSG00000275743|A0A5B0|TRBV14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3216552734375 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 40.422 1 37.933 37.433 38.433 -2.4896 0 0 0 0.23508 1 7234 7234 7.9102 0 1 + 20401 24308 13336 13341 20301 20301 0.058808696194319054 IEKGMVRRY 9 Unmodified _IEKGMVRRY_ 0 0 0 REV__nc|ENSG00000275743|A0A5B0|TRBV14 REV__nc|ENSG00000275743|A0A5B0|TRBV14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3220825195312 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 70 1 66.533 66.033 67.033 -3.467 0 0 0 0.19649 1 13247 13247 0.12781 0 1 + 20402 24308 13336 13341 20302 20302 0.058808696194319054 IEKGMVRRY 9 Unmodified _IEKGMVRRY_ 0 0 0 REV__nc|ENSG00000275743|A0A5B0|TRBV14 REV__nc|ENSG00000275743|A0A5B0|TRBV14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3108520507812 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 72.137 1 68.599 68.099 69.099 -3.5385 0 0 0 0.23508 1 13684 13684 4.3292 0 1 + 20403 24308 13336 13341 20303 20303 0.058808696194319054 IEKGMVRRY 9 Unmodified _IEKGMVRRY_ 0 0 0 REV__nc|ENSG00000275743|A0A5B0|TRBV14 REV__nc|ENSG00000275743|A0A5B0|TRBV14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3222045898438 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 106.68 1 102.59 102.09 103.09 -4.0913 0 0 0 0.19638 1 20514 20514 0.40827 0.20094 1 + 20404 24308 13336 13341 20304 20304 0.058808696194319054 IEKKKKRRLKR 11 Unmodified _IEKKKKRRLKR_ 0 0 0 ENST00000432347.6_2_4:128996143-128999057:+|nuORF ENST00000432347.6_2_4:128996143-128999057:+|nuORF ENST00000432347.6_2_4:128996143-128999057:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3925170898438 2 742.006993 1481.99943 NaN NaN NaN NaN NaN NaN NaN 173.65 1 173.65 173.15 174.15 0 0 0 0 0.23698 1 35917 35917 1.3295 1.3295 1 20405 9796 13337 13342 20305 20305 0.27771417649864816 IEKKKKRRLKR 11 Unmodified _IEKKKKRRLKR_ 0 0 0 ENST00000432347.6_2_4:128996143-128999057:+|nuORF ENST00000432347.6_2_4:128996143-128999057:+|nuORF ENST00000432347.6_2_4:128996143-128999057:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3753662109375 2 742.006993 1481.99943 NaN NaN NaN NaN NaN NaN NaN 172.25 1 167.35 166.85 167.85 -4.8977 0 0 0 0.23698 1 34157 34157 0.26902 0.26902 1 20406 9796 13337 13342 20306 20306 0.27771417649864816 IEKLWQTFWRY 11 Unmodified _IEKLWQTFWRY_ 0 0 0 nc|ENSG00000080298|P48380-2|RFX3;RFX3|p.L614Qfs*4|1|0.12|ENSG00000080298|chr9:3248156-3248160|CGTAA/-|frameshift_variant;ENSG00000080298|ENST00000617270|RFX3;nc|ENSG00000080298|P48380-3|RFX3 nc|ENSG00000080298|P48380-2|RFX3 nc|ENSG00000080298|P48380-2|RFX3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4113159179688 2 785.414269 1568.81398 NaN NaN NaN NaN NaN NaN NaN 124.73 1 120.08 119.58 120.58 -4.6495 0 0 0 0.23324 1 24000 24000 5.7319 0.83484 1 20407 12240 13338 13343 20307 20307 0.05232970339716303 IEKSQCSYH 9 Unmodified _IEKSQCSYH_ 0 0 0 REV__ENSG00000174944|ENST00000309170|P2RY14 REV__ENSG00000174944|ENST00000309170|P2RY14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78515625 2 547.750398 1093.48624 NaN NaN NaN NaN NaN NaN NaN 142.62 1 137.97 137.47 138.47 -4.656 0 0 0 0.23508 1 28191 28191 6.2058 0.9089 1 + 20408 18441 13339 13344 20308 20308 -0.056759681935545814 IEKVALVAN 9 Unmodified _IEKVALVAN_ 0 0 0 REV__ENSG00000107554|ENST00000324109|DNMBP REV__ENSG00000107554|ENST00000324109|DNMBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72369384765625 2 478.792392 955.570232 -0.03641 -1.7433E-05 -0.0040785 -1.9528E-06 -0.040488 -1.9386E-05 478.79237385780414 96.17 0.62337 92.289 91.992 92.615 -3.881 28 17 2 0 0 0 0.80264 1 18420 18420 8.1555 0 1 2350200 + 20409 13732 13340 13345 20309 20309 0.09066930965650499 IELAGNQQ 8 Unmodified _IELAGNQQ_ 0 0 0 CON__Q2KJC7 CON__Q2KJC7 CON__Q2KJC7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.229248046875 2 436.727249 871.439946 0.043693 1.9082E-05 0.032502 1.4195E-05 0.076196 3.3277E-05 436.72720218186726 59.185 0.49589 55.871 55.535 56.031 -3.3139 23 13 2 0 0 0 8448 1 10958 10958 0.62683 0 1 1210100 + 20410 687 13341 13346 20310 20310 -0.0009166503332380671 IELCDASECC 10 Unmodified _IELCDASECC_ 0 0 0 REV__CD2AP-MDFI|1|fusion REV__CD2AP-MDFI|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7904052734375 2 543.201035 1084.38752 0.27953 0.00015184 -2.4796 -0.0013469 -2.2001 -0.0011951 543.7018853209287 142.43 0.24677 137.77 137.58 137.82 -4.656 9 6 2 0 0 0 0.90091 1 28120 28120 6.2058 0 1 2562600 + 20411 13333 13342 13347 20311 20311 -0.15130075545107502 IELDVRAY 8 Unmodified _IELDVRAY_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant;ENST00000541488.1_1_8:48839745-48841720:-|nuORF ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2580871582031 2 489.766374 977.518196 -0.21613 -0.00010585 0.086521 4.2375E-05 -0.12961 -6.3479E-05 489.76662101180386 110.85 0.34438 106.43 106.27 106.61 -4.4231 12 9 2 0 0 0 0.83888 1 21854 21854 24.021 3.5669 1 548630 20412 7917 13343 13348 20312 20312 0.028537675519032746 IELDVRRLRMY 11 Unmodified _IELDVRRLRMY_ 0 0 0 REV__ENST00000477230.1_1_10:92912880-92913003:-|nuORF REV__ENST00000477230.1_1_10:92912880-92913003:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 488.26800537109375 3 488.609894 1462.80785 0.21461 0.00010486 0.026558 1.2976E-05 0.24116 0.00011784 488.6099273637498 146.84 1.173 142.16 141.88 143.05 -4.6868 83 33 3 0 0 0 0.60781 1 29136 29136 5.4027 0.79896 1 10675000 + 20413 22115 13344 13349 20313 20313 0.09496128836576645 IELDVRRLRMY 11 Unmodified _IELDVRRLRMY_ 0 0 0 REV__ENST00000477230.1_1_10:92912880-92913003:-|nuORF REV__ENST00000477230.1_1_10:92912880-92913003:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 488.609894 1462.80785 0.21461 0.00010486 0.026558 1.2976E-05 0.24116 0.00011784 488.6099273637498 146.84 1.173 142.16 141.88 143.05 -4.6868 -0.12237 -7.5741E-05 NaN 5.4027 83 33 3 NaN NaN NaN NaN 0 NaN NaN 0 10675000 + 20414 22115 13344 13349 0.09496128836576645 IELDVRRLRMY 11 Unmodified _IELDVRRLRMY_ 0 0 0 REV__ENST00000477230.1_1_10:92912880-92913003:-|nuORF REV__ENST00000477230.1_1_10:92912880-92913003:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 488.609894 1462.80785 0.25044 0.00012237 0.068737 3.3586E-05 0.31918 0.00015595 488.60996066139097 147.48 1.1998 142.33 141.99 143.19 -5.1557 0.045462 -1.3913E-05 NaN 5.4027 106 33 4 NaN NaN NaN NaN 0 NaN NaN 0 23149000 + 20415 22115 13344 13349 0.09496128836576645 IELDVRRLRMY 11 Unmodified _IELDVRRLRMY_ 0 0 0 REV__ENST00000477230.1_1_10:92912880-92913003:-|nuORF REV__ENST00000477230.1_1_10:92912880-92913003:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 488.609894 1462.80785 0.074204 3.6257E-05 0.14996 7.3271E-05 0.22416 0.00010953 488.6099804426637 147.37 1.1797 142.36 141.95 143.13 -5.0103 0.076908 0.00010514 NaN 5.4027 80 33 3 NaN NaN NaN NaN 0 NaN NaN 0 11213000 + 20416 22115 13344 13349 0.09496128836576645 IELQHKAGEV 10 Unmodified _IELQHKAGEV_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.208251953125 3 375.208384 1122.60332 -0.018476 -6.9322E-06 0.028857 1.0827E-05 0.010381 3.895E-06 375.208307424031 45.48 0.38604 42.614 42.307 42.693 -2.8653 14 10 2 0 0 0 0.75679 1 8264 8264 3.5871 0.26742 1 854500 + 20417 15894 13345 13350 20314 20314 0.04692513017721467 IELSHHIPP 9 Unmodified _IELSHHIPP_ 0 0 0 REV__JMJD1C|p.R1219I|1|0.07|ENSG00000171988|chr10:63208013-63208013|C/A|missense_variant REV__JMJD1C|p.R1219I|1|0.07|ENSG00000171988|chr10:63208013-63208013|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2722778320312 2 521.787641 1041.56073 -0.23968 -0.00012506 1.9646 0.0010251 1.7249 0.00090005 521.789406760985 77.546 0.24725 74.083 73.934 74.181 -3.4633 7 6 2 0 0 0 0.73309 1 15119 15119 4.756 0.81161 1 1074100 + 20418 23691 13346 13351 20315 20315 0.04161162680134112 IELVDHLEP 9 Unmodified _IELVDHLEP_ 0 0 0 REV__ENSG00000068079|ENST00000415816|IFI35 REV__ENSG00000068079|ENST00000415816|IFI35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2831420898438 2 532.784764 1063.55498 0.41719 0.00022227 -0.23652 -0.00012602 0.18067 9.6256E-05 532.7846710996317 106.47 0.61366 102.09 101.75 102.37 -4.3764 42 17 3 0 0 0 0.25702 1 20361 20361 34.102 1.3168 1 7274100 + 20419 14221 13347 13352 20316 20316 0.025740193778119647 IEMDDEEY 8 Unmodified _IEMDDEEY_ 0 0 0 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2609252929688 2 522.19733 1042.38011 NaN NaN NaN NaN NaN NaN NaN 112.76 1 108.49 107.99 108.99 -4.2725 0 0 0 0.21323 1 21713 21713 14.582 1.0738 1 20420 26397 13348 13353 20317 20317 -0.13938768549542147 IENAVELQ 8 Unmodified _IENAVELQ_ 0 0 0 REV__ENST00000568150.2_1_16:48657430-48778223:+|nuORF REV__ENST00000568150.2_1_16:48657430-48778223:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2316589355469 2 458.242732 914.470912 0.1328 6.0856E-05 0.043502 1.9935E-05 0.1763 8.079E-05 458.24272094068834 89.145 1.2308 89.145 88.682 89.913 0 92 34 4 0 0 0 0.68128 1 17421 17421 16.942 0 1 77483000 + 20421 23139 13349 13354 20318 20318 0.010254882809135779 IENCDSSDP 9 Unmodified _IENCDSSDP_ 0 0 0 ENSG00000145826|ENST00000274507|LECT2 ENSG00000145826|ENST00000274507|LECT2 ENSG00000145826|ENST00000274507|LECT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640380859375 2 490.187297 978.36004 0.048076 2.3566E-05 2.7176 0.0013321 2.7657 0.0013557 490.18974177796355 79.053 0.52578 75.248 74.984 75.51 -3.8048 22 14 3 0 0 0 0.8319 1 15026 15026 1.8442 1.2427 1 1057200 20422 4623 13350 13355 20319 20319 -0.13000519489492035 IENDTLYI 8 Unmodified _IENDTLYI_ 0 0 0 tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1 tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1 tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26641845703125 2 490.75039 979.486227 0.42155 0.00020688 0.18681 9.1678E-05 0.60836 0.00029855 490.7504919424558 109.35 0.91499 105.17 104.66 105.58 -4.1826 64 25 3 0 0 0 0.27601 1 21009 21009 46.021 0 1 4118600 20423 26017 13351 13356 20320 20320 -0.004336449219067617 IENDTYKY 8 Unmodified _IENDTYKY_ 0 0 0 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6864013671875 2 523.245472 1044.47639 -0.43258 -0.00022634 1.0726 0.00056125 0.64006 0.00033491 523.2457053832552 40.346 0.18626 37.711 37.543 37.729 -2.6348 6 4 2 0 0 0 0.34106 2 7512 7512;7517 41.84 11.453 1 1003500 20424 2921 13352 13357 20321;20322 20321 -0.04406832927270443 IENDVYKY 8 Unmodified _IENDVYKY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2809448242188 2 522.25584 1042.49713 -0.25638 -0.00013389 0.37877 0.00019781 0.12239 6.3919E-05 522.255716004734 59.582 0.42071 56.649 56.435 56.856 -2.9333 17 11 2 0 0 0 0.31324 1 11466 11466 36.127 15.673 1 668860 20425 4043 13353 13358 20323 20323 -0.022422425476179342 IENDVYKY 8 Unmodified _IENDVYKY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2566528320312 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 59.623 1 56.4 55.9 56.9 -3.2237 0 0 0 0.20618 1 11141 11141 20.454 8.8133 1 20426 4043 13353 13358 20324 20324 -0.022422425476179342 IENIIVEV 8 Unmodified _IENIIVEV_ 0 0 0 nc|ENSG00000102974|P49711-2|CTCF;CTCF|p.E691Sfs*30|1|0.45|ENSG00000102974|chr16:67637752-67637752|A/-|frameshift_variant;ENSG00000102974|ENST00000264010|CTCF nc|ENSG00000102974|P49711-2|CTCF nc|ENSG00000102974|P49711-2|CTCF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2515869140625 2 464.771126 927.527698 NaN NaN NaN NaN NaN NaN NaN 151.12 1 145.94 145.44 146.44 -5.1759 0 0 0 0.10566 1 29294 29294 43.858 3.901 1 20427 739 13354 13359 20325 20325 0.06103535837428353 IENLFYPVT 9 Unmodified _IENLFYPVT_ 0 0 0 nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3 nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-7|PTBP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7864990234375 2 548.289682 1094.56481 0.37829 0.00020741 -2.575 -0.0014118 -2.1967 -0.0012044 548.287095478015 162.43 0.1402 157.64 157.55 157.69 -4.7898 5 3 2 0 0 0 0.7906 1 32308 32308 18.146 6.5061 1 3487300 20428 3067 13355 13360 20326 20326 0.02131207383195033 IENLFYPVT 9 Unmodified _IENLFYPVT_ 0 0 0 nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3 nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-7|PTBP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 548.289682 1094.56481 0.33544 0.00018392 -6.0796 -0.0033334 -5.7442 -0.0031495 548.2849937232513 157.69 0.10548 157.69 157.62 157.73 0 0.025472 -0.0017202 NaN 18.146 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 868870 20429 3067 13355 13360 0.02131207383195033 IENLILVKK 9 Unmodified _IENLILVKK_ 0 0 0 REV__tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1 REV__tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.54833984375 3 357.237504 1068.69068 NaN NaN NaN NaN NaN NaN NaN 98.225 1 94.269 93.769 94.769 -3.9564 0 0 0 0.23508 1 18853 18853 4.5289 0 1 + 20430 25461 13356 13361 20327 20327 0.1590833895927517 IENVIQTL 8 Unmodified _IENVIQTL_ 0 0 0 INTU|p.M414V|1|0.37|ENSG00000164066|chr4:127684467-127684467|A/G|missense_variant;nc|ENSG00000164066|Q9ULD6-3|INTU;INTU|p.F435Lfs*33|1|0.36|ENSG00000164066|chr4:127687717-127687717|T/-|frameshift_variant;INTU|p.L591Cfs*2|2|0.18|ENSG00000164066|chr4:127705791-127705791|T/-|frameshift_variant;nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU INTU|p.M414V|1|0.37|ENSG00000164066|chr4:127684467-127684467|A/G|missense_variant INTU|p.M414V|1|0.37|ENSG00000164066|chr4:127684467-127684467|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.259033203125 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 135.47 1 130.64 130.14 131.14 -4.8307 0 0 0 0.20761 1 26081 26081 19.257 3.4098 1 20431 5501 13357 13362 20328 20328 0.05582651694669494 IENYIASLY 9 Unmodified _IENYIASLY_ 0 0 0 REV__ENSG00000066777|ENST00000262215|ARFGEF1 REV__ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7798461914062 2 543.279315 1084.54408 0.3641 0.00019781 -1.3399 -0.00072797 -0.97585 -0.00053016 543.2784633928663 154.63 0.8049 149.85 149.49 150.3 -4.7791 34 22 2 0 0 0 0.46882 1 30794 30794 21.537 1.0834 1 1760400 + 20432 14203 13358 13363 20329 20329 0.005186170035358373 IEPEEVSL 8 Unmodified _IEPEEVSL_ 0 0 0 ENST00000472931.6_1_7:13946033-14025001:-|nuORF ENST00000472931.6_1_7:13946033-14025001:-|nuORF ENST00000472931.6_1_7:13946033-14025001:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23846435546875 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 103.62 1 99.566 99.066 100.07 -4.0543 0 0 0 0.20896 1 19923 19923 18.135 3.5533 1 20433 10232 13359 13364 20330 20330 -0.0009733381323258072 IEPEEVSL 8 Unmodified _IEPEEVSL_ 0 0 0 ENST00000472931.6_1_7:13946033-14025001:-|nuORF ENST00000472931.6_1_7:13946033-14025001:-|nuORF ENST00000472931.6_1_7:13946033-14025001:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.239013671875 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 103.85 1 99.798 99.298 100.3 -4.0543 0 0 0 0.19954 1 19968 19968 24.674 6.5389 1 20434 10232 13359 13364 20331 20331 -0.0009733381323258072 IEPFFDYY 8 Unmodified _IEPFFDYY_ 0 0 0 CCBL1|p.C127Y|1|0.34|ENSG00000171097|chr9:128838109-128838109|C/T|missense_variant CCBL1|p.C127Y|1|0.34|ENSG00000171097|chr9:128838109-128838109|C/T|missense_variant CCBL1|p.C127Y|1|0.34|ENSG00000171097|chr9:128838109-128838109|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.772216796875 2 547.247483 1092.48041 0.15454 8.4572E-05 -0.59607 -0.0003262 -0.44153 -0.00024162 547.7475303914435 56.382 0.13377 56.382 56.294 56.427 0 5 3 2 0 0 0 0.49844 1 10757 10757 28.173 0 1 782040 20435 407 13360 13365 20332 20332 -0.06212743433570722 IEPPPGKH 8 Unmodified _IEPPPGKH_ 0 0 0 ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2 ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2168273925781 2 437.742702 873.470852 -0.00046355 -2.0292E-07 0.026876 1.1765E-05 0.026413 1.1562E-05 437.742700204623 70.79 0.27679 70.79 70.626 70.903 0 9 7 2 0 0 0 0.96386 1 13683 13683 20.454 7.9221 1 925090 20436 64 13361 13366 20333 20333 0.029055330715777927 IEPWFIFSL 9 Unmodified _IEPWFIFSL_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3130493164062 2 576.310418 1150.60628 NaN NaN NaN NaN NaN NaN NaN 106.48 1 102.1 101.6 102.6 -4.3764 0 0 0 0.22251 1 20423 20423 16.942 0 1 20437 2813 13362 13367 20334 20334 0.037003881425107465 IEQDDDNN 8 Unmodified _IEQDDDNN_ 0 0 0 nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.T1208Kfs*3|1|0.87|ENSG00000101972|chrX:124095400-124095400|C/-|frameshift_variant;ENSG00000101972|ENST00000371145|STAG2 nc|ENSG00000101972|Q8N3U4|STAG2 nc|ENSG00000101972|Q8N3U4|STAG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.782470703125 2 481.688518 961.362483 -0.12304 -5.9269E-05 -0.68082 -0.00032794 -0.80386 -0.00038721 481.68786404730076 89.587 0.87579 89.587 89.173 90.049 0 92 24 6 0 0 0 0.95515 1 17456 17456 15.847 0 1 20475000 20438 2101 13363 13368 20335 20335 -0.11974347760178716 IEQEFLTEA 9 Unmodified _IEQEFLTEA_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENST00000426279.1_1_X:44168653-44169127:-|nuORF;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2689208984375 2 540.266404 1078.51826 0.55356 0.00029907 -0.47215 -0.00025508 0.081419 4.3988E-05 540.2662113878729 105.47 0.70834 105.47 105 105.71 0 48 19 4 0 0 0 0.25183 1 20699 20699 34.402 1.616 1 8599600 20439 6180 13364 13369 20336 20336 -0.017862772387616133 IEQEFLTEA 9 Unmodified _IEQEFLTEA_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENST00000426279.1_1_X:44168653-44169127:-|nuORF;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2689819335938 2 540.266404 1078.51826 -0.21206 -0.00011457 0.068812 3.7177E-05 -0.14325 -7.7392E-05 540.266524431922 109.89 0.75748 105.51 105.14 105.89 -4.3776 55 21 3 0 0 0 0.36931 1 21656 21656 27.629 3.6082 1 7549400 20440 6180 13364 13369 20337 20337 -0.017862772387616133 IEQEWRLL 8 Unmodified _IEQEWRLL_ 0 0 0 REV__ENSG00000077498|ENST00000263321|TYR REV__ENSG00000077498|ENST00000263321|TYR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7960815429688 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 117.31 1 112.95 112.45 113.45 -4.3585 0 0 0 0.21486 1 22580 22580 10.183 0 1 + 20441 14366 13365 13370 20338 20338 0.04757431851635374 IEQGRTEPD 9 Unmodified _IEQGRTEPD_ 0 0 0 REV__ENSG00000075303|ENST00000341119|SLC25A40 REV__ENSG00000075303|ENST00000341119|SLC25A40 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2616577148438 2 522.751453 1043.48835 -0.2666 -0.00013937 0.78839 0.00041213 0.52179 0.00027276 522.7523572384895 58.876 0.5653 55.966 55.683 56.248 -2.9105 27 15 2 0 0 0 0.52242 1 11323 11323 29.082 2.1979 1 1852800 + 20442 14329 13366 13371 20339 20339 -0.031652161840838744 IEQGRTEPD 9 Unmodified _IEQGRTEPD_ 0 0 0 REV__ENSG00000075303|ENST00000341119|SLC25A40 REV__ENSG00000075303|ENST00000341119|SLC25A40 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2792358398438 2 522.751453 1043.48835 0.16487 8.6188E-05 0.72582 0.00037943 0.8907 0.00046561 522.7521368298691 59.203 0.58903 55.998 55.718 56.307 -3.2052 28 16 2 0 0 0 0.52242 1 11040 11040 29.082 2.1979 1 1462100 + 20443 14329 13366 13371 20340 20340 -0.031652161840838744 IEQHKIETWRE 11 Unmodified _IEQHKIETWRE_ 0 0 0 nc|ENSG00000115592|Q9UGI9-2|PRKAG3;ENSG00000115592|ENST00000439262|PRKAG3 nc|ENSG00000115592|Q9UGI9-2|PRKAG3 nc|ENSG00000115592|Q9UGI9-2|PRKAG3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2580871582031 3 490.256285 1467.74703 NaN NaN NaN NaN NaN NaN NaN 110.92 1 106.49 105.99 106.99 -4.4231 0 0 0 0.22632 1 21851 21851 0.03141 0.0052036 1 20444 2868 13367 13372 20341 20341 0.03186315057973843 IEQHKIETWRE 11 Unmodified _IEQHKIETWRE_ 0 0 0 nc|ENSG00000115592|Q9UGI9-2|PRKAG3;ENSG00000115592|ENST00000439262|PRKAG3 nc|ENSG00000115592|Q9UGI9-2|PRKAG3 nc|ENSG00000115592|Q9UGI9-2|PRKAG3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2684631347656 3 490.256285 1467.74703 NaN NaN NaN NaN NaN NaN NaN 133.04 1 128.24 127.74 128.74 -4.799 0 0 0 0.22632 1 25605 25605 0.026206 0 1 20445 2868 13367 13372 20342 20342 0.03186315057973843 IEQISKVY 8 Unmodified _IEQISKVY_ 0 0 0 nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A nc|ENSG00000181222|P24928|POLR2A nc|ENSG00000181222|P24928|POLR2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2764892578125 2 490.276575 978.538597 -0.13594 -6.6648E-05 0.21509 0.00010545 0.079151 3.8806E-05 490.2765525729849 65.676 0.34419 65.676 65.518 65.862 0 12 9 2 0 0 0 0.074546 1 12664 12664 82.529 21.172 1 2676900 20446 6715 13368 13373 20343 20343 0.04846938211710494 IEQISKVY 8 Unmodified _IEQISKVY_ 0 0 0 nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A nc|ENSG00000181222|P24928|POLR2A nc|ENSG00000181222|P24928|POLR2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2765808105469 2 490.276575 978.538597 0.038545 1.8898E-05 0.49525 0.00024281 0.5338 0.00026171 490.2770477041047 68.89 0.56213 65.71 65.447 66.009 -3.1796 20 15 2 0 0 0 0.055325 2 13368 13368;13408 86.332 21.097 1 3851100 20447 6715 13368 13373 20344;20345 20344 0.04846938211710494 IEQISKVY 8 Unmodified _IEQISKVY_ 0 0 0 nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A nc|ENSG00000181222|P24928|POLR2A nc|ENSG00000181222|P24928|POLR2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.257568359375 2 490.276575 978.538597 0.44953 0.00022039 0.017124 8.3953E-06 0.46665 0.00022879 490.27658519252327 69.293 0.54375 65.757 65.433 65.976 -3.5362 22 14 2 0 0 0 0.055325 2 13031 13031;13055 86.332 21.097 1 2527300 20448 6715 13368 13373 20346;20347 20346 0.04846938211710494 IEQISKVY 8 Unmodified _IEQISKVY_ 0 0 0 nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A nc|ENSG00000181222|P24928|POLR2A nc|ENSG00000181222|P24928|POLR2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27655029296875 2 490.276575 978.538597 0.094967 4.656E-05 0.15577 7.6368E-05 0.25073 0.00012293 490.276649449638 69.155 0.55913 65.764 65.456 66.015 -3.3903 22 15 2 0 0 0 0.036759 1 13063 13063 96.367 21.438 1 2411700 20449 6715 13368 13373 20348 20348 0.04846938211710494 IEQKQLFLKN 10 Unmodified _IEQKQLFLKN_ 0 0 0 REV__tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1 REV__tr|U7SFT1|U7SFT1_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02223PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7645874023438 2 630.869163 1259.72377 NaN NaN NaN NaN NaN NaN NaN 74.85 1 71.486 70.986 71.986 -3.3643 0 0 0 0.22588 1 14604 14604 6.2058 0 1 + 20450 24859 13369 13374 20349 20349 0.10429921011314036 IEQLEERLKYY 11 Unmodified _IEQLEERLKYY_ 0 0 0 RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant;RASSF9|p.E309Vfs*9|1|0.05|ENSG00000198774|chr12:85805084-85805085|-/AAATA|frameshift_variant;ENSG00000198774|ENST00000361228|RASSF9 RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3922729492188 2 742.393199 1482.77184 NaN NaN NaN NaN NaN NaN NaN 108.16 1 108.16 107.66 108.66 0 0 0 0 0.22632 1 21269 21269 0.00056442 0 1 20451 7490 13370 13375 20350 20350 0.04976950140712688 IEQLEERLKYY 11 Unmodified _IEQLEERLKYY_ 0 0 0 RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant;RASSF9|p.E309Vfs*9|1|0.05|ENSG00000198774|chr12:85805084-85805085|-/AAATA|frameshift_variant;ENSG00000198774|ENST00000361228|RASSF9 RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.39208984375 2 742.393199 1482.77184 NaN NaN NaN NaN NaN NaN NaN 126.53 1 121.73 121.23 122.23 -4.7958 0 0 0 0.22632 1 24287 24287 0.026206 0 1 20452 7490 13370 13375 20351 20351 0.04976950140712688 IEQRLKWF 8 Unmodified _IEQRLKWF_ 0 0 0 REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27 REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 374.1311340332031 3 373.881831 1118.62366 -0.49731 -0.00018593 -0.7553 -0.00028239 -1.2526 -0.00046833 373.880650080021 68.175 1.8414 68.175 67.514 69.355 0 67 51 2 0 0 0 1.0265 1 13371 13371 1.6526 0 1 2661400 + 20453 16989 13371 13376 20352 20352 0.06909728468190224 IEQRMWHS 8 Unmodified _IEQRMWHS_ 0 0 0 REV__nc|ENSG00000163508|O95936-3|EOMES REV__nc|ENSG00000163508|O95936-3|EOMES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77001953125 2 543.761101 1085.50765 0.26773 0.00014558 0.50145 0.00027267 0.76918 0.00041825 543.7598482502824 141.19 0.47971 136.54 136.37 136.85 -4.6493 13 13 2 0 0 0 0.69713 1 27914 27914 14.838 1.7958 1 1979700 + 20454 17578 13372 13377 20353 20353 -0.03168538374166019 IEQRMWHS 8 Unmodified _IEQRMWHS_ 0 0 0 REV__nc|ENSG00000163508|O95936-3|EOMES REV__nc|ENSG00000163508|O95936-3|EOMES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7860107421875 2 543.761101 1085.50765 0.54923 0.00029865 -0.031409 -1.7079E-05 0.51782 0.00028157 543.7610033381837 122.19 0.47963 117.51 117.34 117.82 -4.6873 18 13 2 0 0 0 0.56049 1 23436 23436 24.674 1.9376 1 1047200 + 20455 17578 13372 13377 20354 20354 -0.03168538374166019 IEQRMWHS 8 Unmodified _IEQRMWHS_ 0 0 0 REV__nc|ENSG00000163508|O95936-3|EOMES REV__nc|ENSG00000163508|O95936-3|EOMES MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.761101 1085.50765 0.44404 0.00024145 0.27943 0.00015194 0.72347 0.0003934 543.7611473521456 122.1 0.39418 117.55 117.35 117.74 -4.5476 0.042394 6.0332E-05 NaN 24.674 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1592800 + 20456 17578 13372 13377 -0.03168538374166019 IEQSSNCEA 9 Unmodified _IEQSSNCEA_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1;ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2643127441406 2 490.703114 979.391675 NaN NaN NaN NaN NaN NaN NaN 133.71 1 133.71 133.21 134.21 0 0 0 0 0.23508 1 26456 26456 10.824 2.2306 1 20457 5514 13373 13378 20355 20355 -0.09884526735538657 IEQTFRSV 8 Unmodified _IEQTFRSV_ 0 0 0 REV__nc|ENSG00000164889|P04920-2|SLC4A2 REV__nc|ENSG00000164889|P04920-2|SLC4A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2641906738281 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 48.491 1 48.491 47.991 48.991 0 0 0 0 0.21039 1 9158 9158 16.942 0 1 + 20458 17719 13374 13379 20356 20356 0.02332883409144415 IEQTFRSV 8 Unmodified _IEQTFRSV_ 0 0 0 REV__nc|ENSG00000164889|P04920-2|SLC4A2 REV__nc|ENSG00000164889|P04920-2|SLC4A2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.275634765625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 92.057 1 88.248 87.748 88.748 -3.8083 0 0 0 0.18734 1 17634 17634 29.082 3.6823 1 + 20459 17719 13374 13379 20357 20357 0.02332883409144415 IERALERGVFA 11 Unmodified _IERALERGVFA_ 0 0 0 REV__ENST00000441363.1_1_6:73973136-74009049:+|nuORF REV__ENST00000441363.1_1_6:73973136-74009049:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7515869140625 2 630.856586 1259.69862 0.06908 4.358E-05 0.34626 0.00021844 0.41534 0.00026202 630.8568139735781 109.29 0.65795 104.84 104.43 105.09 -4.4518 47 18 3 0 0 0 0.68348 1 20923 20923 12.873 0.63195 1 4769100 + 20460 21712 13375 13380 20358 20358 0.07915866208759326 IERFHRYLLPK 11 Unmodified _IERFHRYLLPK_ 0 0 0 REV__ENSG00000168016|ENST00000645898|TRANK1 REV__ENSG00000168016|ENST00000645898|TRANK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 491.2906799316406 3 491.289261 1470.84595 NaN NaN NaN NaN NaN NaN NaN 69.101 1 65.711 65.211 66.211 -3.3903 0 0 0 0.22632 1 13060 13060 0 0 1 + 20461 17989 13376 13381 20359 20359 0.12936382813563796 IERGLQKIE 9 Unmodified _IERGLQKIE_ 0 0 0 REV__ENST00000493902.5_1_16:31044585-31047064:+|nuORF REV__ENST00000493902.5_1_16:31044585-31047064:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.790771484375 2 543.319306 1084.62406 0.11526 6.2625E-05 -0.1787 -9.7093E-05 -0.06344 -3.4468E-05 543.3188764666311 143.76 0.49283 138.72 138.47 138.96 -5.0432 25 13 2 0 0 0 0.066439 1 27759 27759 37.075 22.088 1 5256100 + 20462 14886 13377 13382 20360 20360 0.08513103397376653 IERKKAAL 8 Unmodified _IERKKAAL_ 0 0 0 REV__CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant REV__CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651306152344 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 117.77 1 117.77 117.27 118.27 0 0 0 0 0.23837 1 23197 23197 0.12286 0 1 + 20463 13376 13378 13383 20361 20361 0.11986056922410171 IERKKAAL 8 Unmodified _IERKKAAL_ 0 0 0 REV__CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant REV__CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 126.06 1 126.06 125.56 126.56 0 0 0 0 0.23837 1 24873 24873 0.12286 0 1 + 20464 13376 13378 13383 20362 20362 0.11986056922410171 IERKKAAL 8 Unmodified _IERKKAAL_ 0 0 0 REV__CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant REV__CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1652526855469 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 127.88 1 127.88 127.38 128.38 0 0 0 0 0.23837 1 25247 25247 0.12286 0 1 + 20465 13376 13378 13383 20363 20363 0.11986056922410171 IERLESVKVST 11 Unmodified _IERLESVKVST_ 0 0 0 REV__TDRD7|p.N797Sfs*58|1|0.03|ENSG00000196116|chr9:97480915-97480916|-/GTAATGTTAAT|frameshift_variant REV__TDRD7|p.N797Sfs*58|1|0.03|ENSG00000196116|chr9:97480915-97480916|-/GTAATGTTAAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7778930664062 2 630.861534 1259.70852 NaN NaN NaN NaN NaN NaN NaN 173.33 1 168.54 168.04 169.04 -4.7898 0 0 0 0.22595 1 35349 35349 11.495 1.3441 1 + 20466 19217 13379 13384 20364 20364 0.08905009423483534 IERPSRGF 8 Unmodified _IERPSRGF_ 0 0 0 REV__ENSG00000146830|ENST00000678049|GIGYF1 REV__ENSG00000146830|ENST00000678049|GIGYF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25482177734375 2 481.264333 960.514114 NaN NaN NaN NaN NaN NaN NaN 119.66 1 115.19 114.69 115.69 -4.467 0 0 0 0.21486 1 23036 23036 10.183 0 1 + 20467 16902 13380 13385 20365 20365 0.03227722848862413 IERQHRKL 8 Unmodified _IERQHRKL_ 0 0 0 REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2679443359375 2 540.325257 1078.63596 -0.10851 -5.8632E-05 0.67579 0.00036515 0.56728 0.00030652 540.3255297122313 35.409 0.50178 33.015 32.774 33.276 -2.3938 21 13 2 0 0 0 8448 1 6493 6493 1.7423 1.6194 1 1264700 + 20468 18928 13381 13386 20366 20366 0.0997876493122476 IERQHRKL 8 Unmodified _IERQHRKL_ 0 0 0 REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2782592773438 2 540.325257 1078.63596 0.26497 0.00014317 0.41104 0.0002221 0.67602 0.00036527 540.3253223786759 35.279 0.48981 33.026 32.776 33.266 -2.2527 23 13 2 0 0 0 8448 1 6215 6215 1.7423 0 1 1327400 + 20469 18928 13381 13386 20367 20367 0.0997876493122476 IERQHRKL 8 Unmodified _IERQHRKL_ 0 0 0 REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.325257 1078.63596 0.28728 0.00015522 0.13022 7.0361E-05 0.4175 0.00022558 540.3253071541526 33.008 0.41967 33.008 32.746 33.165 0 -0.0075987 -0.00017472 NaN 1.7423 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1270900 + 20470 18928 13381 13386 0.0997876493122476 IERQHRKL 8 Unmodified _IERQHRKL_ 0 0 0 REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.325257 1078.63596 -0.10851 -5.8632E-05 0.67579 0.00036515 0.56728 0.00030652 540.3255297122313 35.409 0.50178 33.015 32.774 33.276 -2.3938 -0.0004906 0.00041485 NaN 1.7423 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1264700 + 20471 18928 13381 13386 0.0997876493122476 IERQHRKL 8 Unmodified _IERQHRKL_ 0 0 0 REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.325257 1078.63596 0.40346 0.000218 -0.010132 -5.4747E-06 0.39333 0.00021252 540.3251055138895 35.29 0.45333 33.013 32.828 33.281 -2.2766 -0.0025122 -0.00032639 NaN 1.7423 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 907480 + 20472 18928 13381 13386 0.0997876493122476 IERTRVSYQ 9 Unmodified _IERTRVSYQ_ 0 0 0 REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.31494140625 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 59.925 1 56.992 56.492 57.492 -2.9333 0 0 0 0.22193 1 11525 11525 17.113 6.9623 1 + 20473 25051 13382 13387 20368 20368 0.04019031249231375 IERTRVSYQ 9 Unmodified _IERTRVSYQ_ 0 0 0 REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 REV__tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.313720703125 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 91.67 1 87.576 87.076 88.076 -4.0946 0 0 0 0.22962 1 17459 17459 14.838 0.93222 1 + 20474 25051 13382 13387 20369 20369 0.04019031249231375 IERWCWVLRRF 11 Unmodified _IERWCWVLRRF_ 0 0 0 ENST00000526852.5_1_11:10879166-10879364:-|nuORF ENST00000526852.5_1_11:10879166-10879364:-|nuORF ENST00000526852.5_1_11:10879166-10879364:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.27197265625 3 521.950362 1562.82926 -0.33271 -0.00017366 0.88177 0.00046024 0.54906 0.00028658 521.9509789442799 57.891 0.23936 54.981 54.825 55.064 -2.9105 8 6 2 0 0 0 0.89084 1 11118 11118 0.0072825 0 1 769760 20475 10920 13383 13388 20370 20370 0.070355586559117 IERYSGVGY 9 Unmodified _IERYSGVGY_ 0 0 0 REV__ENSG00000105929|ENST00000310018|ATP6V0A4 REV__ENSG00000105929|ENST00000310018|ATP6V0A4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2613525390625 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 106.37 1 106.37 105.87 106.87 0 0 0 0 0.19721 1 20910 20910 24.021 0.87215 1 + 20476 15024 13384 13389 20371 20371 -0.011194204534604069 IESFFKYREER 11 Unmodified _IESFFKYREER_ 0 0 0 REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1 REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 752.3838500976562 2 752.383165 1502.75178 NaN NaN NaN NaN NaN NaN NaN 52.115 1 52.115 51.615 52.615 0 0 0 0 0.23476 1 9901 9901 4.5289 1.5336 1 + 20477 24907 13385 13390 20372 20372 0.02051199200764131 IESFFKYREER 11 Unmodified _IESFFKYREER_ 0 0 0 REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1 REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 752.3849487304688 2 752.383165 1502.75178 NaN NaN NaN NaN NaN NaN NaN 55.053 1 52.17 51.67 52.67 -2.8837 0 0 0 0.23379 1 10524 10524 5.2969 2.3016 1 + 20478 24907 13385 13390 20373 20373 0.02051199200764131 IESGTRYAF 9 Unmodified _IESGTRYAF_ 0 0 0 REV__nc|ENSG00000102362|Q96C24-2|SYTL4 REV__nc|ENSG00000102362|Q96C24-2|SYTL4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2723388671875 2 522.261456 1042.50836 -0.89984 -0.00046995 1.1099 0.00057965 0.21004 0.0001097 522.2618365449091 110.23 0.691 105.74 105.41 106.11 -4.4915 34 19 2 0 0 0 0.095246 1 21208 21208 10.899 0 1 2388100 + 20479 14836 13386 13391 20374 20374 -0.011194204534831442 IESIIIQKVLK 11 Unmodified _IESIIIQKVLK_ 0 0 0 REV__ENSG00000080608|ENST00000397885|PUM3 REV__ENSG00000080608|ENST00000397885|PUM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 641.8781127929688 2 642.418488 1282.82242 1.1416 0.00073335 -3.081 -0.0019793 -1.9395 -0.001246 642.919511099395 167.24 0.20364 162.45 162.29 162.49 -4.7898 8 5 3 0 0 0 0.89764 1 33707 33707 8.1555 1.9497 1 21102000 + 20480 14414 13387 13392 20375 20375 0.19232524256358374 IESIVHAF 8 Unmodified _IESIVHAF_ 0 0 0 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2390441894531 2 458.25036 914.486168 0.24679 0.00011309 0.10451 4.7893E-05 0.3513 0.00016098 458.2503636835237 114.95 0.59039 114.95 114.68 115.27 0 30 16 2 0 0 0 0.18159 1 22578 22578 59.795 10.126 1 2533500 20481 5384 13388 13393 20376 20376 0.025503998687554486 IESIVHAF 8 Unmodified _IESIVHAF_ 0 0 0 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2380676269531 2 458.25036 914.486168 0.19893 9.1159E-05 -0.017377 -7.9628E-06 0.18155 8.3196E-05 458.2502144226094 119.22 0.77888 114.72 114.36 115.14 -4.502 32 21 2 0 0 0 0.072472 2 23470 23470;23545 82.939 23.319 1 2999900 20482 5384 13388 13393 20377;20378 20377 0.025503998687554486 IESIVHAF 8 Unmodified _IESIVHAF_ 0 0 0 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2373046875 2 458.25036 914.486168 NaN NaN NaN NaN NaN NaN NaN 118.97 1 114.36 113.86 114.86 -4.6106 0 0 0 0.22847 1 22830 22830 10.074 3.8681 1 20483 5384 13388 13393 20379 20379 0.025503998687554486 IESIVHAF 8 Unmodified _IESIVHAF_ 0 0 0 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.25036 914.486168 0.48417 0.00022187 0.049248 2.2568E-05 0.53342 0.00024444 458.25014603853856 119.31 0.63441 114.67 114.39 115.02 -4.645 -0.10596 6.0975E-05 NaN 82.939 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2132000 20484 5384 13388 13393 0.025503998687554486 IESIVHAF 8 Unmodified _IESIVHAF_ 0 0 0 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 458.25036 914.486168 0.39892 0.00018281 -0.18605 -8.5258E-05 0.21287 9.7549E-05 458.25019176097265 119.16 0.66328 114.75 114.38 115.05 -4.4088 -0.019676 -0.00015468 NaN 82.939 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2259400 20485 5384 13388 13393 0.025503998687554486 IESKEEAL 8 Unmodified _IESKEEAL_ 0 0 0 REV__ENST00000486374.5_1_10:24873567-24873630:-|nuORF REV__ENST00000486374.5_1_10:24873567-24873630:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24615478515625 2 459.742565 917.470577 -0.06075 -2.793E-05 0.52405 0.00024093 0.4633 0.000213 459.74259994178277 115.63 0.51286 111.15 110.84 111.36 -4.4726 20 14 2 0 0 0 0.6199 1 22822 22822 20.871 1.4322 1 1045200 + 20486 22236 13389 13394 20380 20380 0.008540685610569199 IESLTTHTW 9 Unmodified _IESLTTHTW_ 0 0 0 ENST00000381410.4_1_5:53840086-53840167:+|nuORF ENST00000381410.4_1_5:53840086-53840167:+|nuORF ENST00000381410.4_1_5:53840086-53840167:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7816772460938 2 544.274564 1086.53457 0.46009 0.00025042 -0.23427 -0.00012751 0.22582 0.00012291 544.2748906318961 98.193 1.0695 98.193 97.507 98.576 0 38 19 3 0 0 0 0.55979 1 19112 19112 15.847 1.0089 1 3786900 20487 9327 13390 13395 20381 20381 -0.005231512820046191 IESLYTKLGK 10 Unmodified _IESLYTKLGK_ 0 0 0 nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;ENST00000542424.1_1_12:1005827-1009868:+|nuORF nc|ENSG00000060237|Q9H4A3-4|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.33447265625 2 576.337164 1150.65977 -0.092726 -5.3442E-05 -1.4867 -0.00085686 -1.5795 -0.0009103 576.8389034036164 49.26 0.17852 46.379 46.271 46.449 -2.8811 6 4 2 0 0 0 0.59928 2 9330 9317;9330 19.257 0 1 1384700 20488 1306 13391 13396 20382;20383 20383 0.09047140854386271 IESNFITGKG 10 Unmodified _IESNFITGKG_ 0 0 0 nc|ENSG00000163380|Q0VAK6-2|LMOD3;ENSG00000163380|ENST00000420581|LMOD3 nc|ENSG00000163380|Q0VAK6-2|LMOD3 nc|ENSG00000163380|Q0VAK6-2|LMOD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2806396484375 2 533.282389 1064.55022 -0.3097 -0.00016516 0.93185 0.00049694 0.62215 0.00033178 533.2826764579202 37.342 0.44506 34.874 34.605 35.05 -2.4688 22 12 2 0 0 0 0.51405 1 6861 6861 3.8763 0 1 711740 20489 5421 13392 13397 20384 20384 0.020531352350417365 IESQGRLL 8 Unmodified _IESQGRLL_ 0 0 0 REV__MEGF8|p.T1670Qfs*60|3|0.4|ENSG00000105429|chr19:42357575-42357575|C/-|frameshift_variant REV__MEGF8|p.T1670Qfs*60|3|0.4|ENSG00000105429|chr19:42357575-42357575|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23797607421875 2 458.266542 914.51853 NaN NaN NaN NaN NaN NaN NaN 130.58 1 125.81 125.31 126.31 -4.7725 0 0 0 0.19954 1 25134 25134 24.674 0 1 + 20490 23839 13393 13398 20385 20385 0.05785187271783343 IESSGCFM 8 Unmodified _IESSGCFM_ 0 0 0 RNF180|p.A30E|1|0.18|ENSG00000164197|chr5:64200896-64200896|C/A|missense_variant RNF180|p.A30E|1|0.18|ENSG00000164197|chr5:64200896-64200896|C/A|missense_variant RNF180|p.A30E|1|0.18|ENSG00000164197|chr5:64200896-64200896|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2164611816406 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 82.942 1 82.942 82.442 83.442 0 0 0 0 0.21486 1 16168 16168 5.7604 1.4312 1 20491 25615 13394 13399 20386 20386 -0.1004514731407653 IESTFHMY 8 Oxidation (M) _IESTFHM(Oxidation (M))Y_ IESTFHM(1)Y IESTFHM(43)Y 0 0 1 ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-2|ERI3 ENSG00000117419|ENST00000372257|ERI3 ENSG00000117419|ENST00000372257|ERI3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2634887695312 2 522.228768 1042.44298 NaN NaN NaN NaN NaN NaN NaN 58.204 1 54.999 54.499 55.499 -3.2052 0 0 0 0.11185 1 10858 10858 42.968 21.221 1 20492 2985 13395 13400 20387 20387 39 -0.07654157970819142 IETDEEDDD 9 Unmodified _IETDEEDDD_ 0 0 0 REV__ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant REV__ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2633056640625 2 540.696206 1079.37786 0.13845 7.4861E-05 1.6073 0.00086905 1.7457 0.00094391 540.6970123592234 102.78 0.53036 98.596 98.411 98.941 -4.1861 18 14 2 0 0 0 0.55979 1 20210 20210 15.847 5.0233 1 948390 + 20493 16565 13396 13401 20388 20388 -0.15865525753633847 IETDEEDDD 9 Unmodified _IETDEEDDD_ 0 0 0 REV__ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant REV__ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.696206 1079.37786 0.13845 7.4861E-05 1.6073 0.00086905 1.7457 0.00094391 540.6970123592234 102.78 0.53036 98.596 98.411 98.941 -4.1861 0.074782 8.5944E-05 NaN 15.847 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 948390 + 20494 16565 13396 13401 -0.15865525753633847 IETDYLNI 8 Unmodified _IETDYLNI_ 0 0 0 REV__tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1 REV__tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.7393493652344 2 490.75039 979.486227 NaN NaN NaN NaN NaN NaN NaN 142.13 1 137.1 136.6 137.6 -5.0261 0 0 0 0.10104 1 27387 27387 8.966 0 1 + 20495 25003 13397 13402 20389 20389 -0.004336449219067617 IETFEEEII 9 Unmodified _IETFEEEII_ 0 0 0 REV__tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1 REV__tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21282958984375 3 374.857017 1121.54922 NaN NaN NaN NaN NaN NaN NaN 65.615 1 65.615 65.115 66.115 0 0 0 0 0.23508 1 12657 12657 5.2969 0 1 + 20496 25176 13398 13403 20390 20390 -0.0066912392451286 IETFTKKR 8 Unmodified _IETFTKKR_ 0 0 0 REV__ENST00000366997.8_1_1:211917362-211917548:-|nuORF REV__ENST00000366997.8_1_1:211917362-211917548:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.4879150390625 3 341.537953 1021.59203 NaN NaN NaN NaN NaN NaN NaN 17.412 1 17.412 16.912 17.912 0 0 0 0 0.23698 1 2759 2759 0.12286 0.049601 1 + 20497 20906 13399 13404 20391 20391 0.08209735714240196 IETMEYKYDEF 11 Unmodified _IETMEYKYDEF_ 0 0 0 tr|U7T3J6|U7T3J6_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00301PE=4SV=1 tr|U7T3J6|U7T3J6_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00301PE=4SV=1 tr|U7T3J6|U7T3J6_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00301PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27520751953125 3 489.883126 1466.62755 -0.0782 -3.8309E-05 0.86317 0.00042285 0.78497 0.00038454 489.8834477372523 52.541 0.30557 49.658 49.486 49.791 -2.8837 13 8 2 0 0 0 0.95473 1 9995 9995 11.631 4.2023 1 1148600 20498 26405 13400 13405 20392 20392 -0.08710059401573744 IETMEYKYDEF 11 Unmodified _IETMEYKYDEF_ 0 0 0 tr|U7T3J6|U7T3J6_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00301PE=4SV=1 tr|U7T3J6|U7T3J6_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00301PE=4SV=1 tr|U7T3J6|U7T3J6_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00301PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2558898925781 3 489.883126 1466.62755 0.15664 7.6737E-05 -0.20684 -0.00010133 -0.050193 -2.4589E-05 489.8832701985054 52.939 0.45401 49.852 49.551 50.005 -3.0876 13 12 2 0 0 0 0.75092 1 9730 9730 8.2864 0 1 1091300 20499 26405 13400 13405 20393 20393 -0.08710059401573744 IETMEYKYDEF 11 Unmodified _IETMEYKYDEF_ 0 0 0 tr|U7T3J6|U7T3J6_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00301PE=4SV=1 tr|U7T3J6|U7T3J6_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00301PE=4SV=1 tr|U7T3J6|U7T3J6_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00301PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2763671875 3 489.883126 1466.62755 -0.29493 -0.00014448 0.57666 0.0002825 0.28173 0.00013801 489.883504742842 52.793 0.3821 49.698 49.518 49.901 -3.0954 15 10 2 0 0 0 0.9614 1 9778 9778 5.8681 1.7515 1 594290 20500 26405 13400 13405 20394 20394 -0.08710059401573744 IETNLMVNL 9 Unmodified _IETNLMVNL_ 0 0 0 ENST00000515140.1_3_4:68340585-68358532:-|nuORF;ENST00000513216.5_3_4:68338325-68358532:-|nuORF ENST00000515140.1_3_4:68340585-68358532:-|nuORF ENST00000515140.1_3_4:68340585-68358532:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.701416015625 2 523.781167 1045.54778 -0.30712 -0.00016086 0.43602 0.00022838 0.1289 6.7518E-05 523.7812669590726 99.616 0.44208 95.346 95.068 95.51 -4.2692 19 12 2 0 0 0 0.66788 1 19006 19006 17.113 0 1 2031200 20501 10761 13401 13406 20395 20395 0.026829635057538326 IETVVKSASI 10 Unmodified _IETVVKSASI_ 0 0 0 ENST00000515074.1_1_4:163244087-163244557:+|nuORF ENST00000515074.1_1_4:163244087-163244557:+|nuORF ENST00000515074.1_1_4:163244087-163244557:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6854248046875 2 523.808239 1045.60193 NaN NaN NaN NaN NaN NaN NaN 79.388 1 75.583 75.083 76.083 -3.8048 0 0 0 0.22588 1 15061 15061 6.2058 0.44535 1 20502 10782 13402 13407 20396 20396 0.0809487892895504 IEVALFLINDL 11 Unmodified _IEVALFLINDL_ 0 0 0 REV__tr|U7SGH1|U7SGH1_FUSNUCelldivisionproteinZapAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02201PE=4SV=1 REV__tr|U7SGH1|U7SGH1_FUSNUCelldivisionproteinZapAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02201PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7742309570312 2 630.365921 1258.71729 NaN NaN NaN NaN NaN NaN NaN 173.79 1 168.9 168.4 169.4 -4.8855 0 0 0 0.21513 1 34564 34564 15.248 3.7538 1 + 20503 24875 13403 13408 20397 20397 0.09827983059972212 IEVDNYISL 9 Unmodified _IEVDNYISL_ 0 0 0 REV__tr|U7STX6|U7STX6_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1 REV__tr|U7STX6|U7STX6_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2769165039062 2 533.276772 1064.53899 0.024312 1.2965E-05 0.20625 0.00010999 0.23057 0.00012296 533.2767980705564 86.149 0.78982 82.422 82.082 82.872 -3.727 63 21 4 0 0 0 0.10537 1 16877 16877 29.082 16.854 1 24285000 + 20504 25127 13404 13409 20398 20398 0.009303131409069465 IEVKAETKEVK 11 Unmodified _IEVKAETKEVK_ 0 0 0 REV__tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1 REV__tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2513732910156 3 425.250249 1272.72892 NaN NaN NaN NaN NaN NaN NaN 31.765 1 29.617 29.117 30.117 -2.1483 0 0 0 0.22632 1 5483 5483 5.4027 0 1 + 20505 24880 13405 13410 20399 20399 0.10346180083251966 IEVLQGSDMPQ 11 Unmodified _IEVLQGSDMPQ_ 0 0 0 REV__ENST00000320912.8_1_4:6642969-6643497:+|nuORF REV__ENST00000320912.8_1_4:6642969-6643497:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 608.7045288085938 2 608.797546 1215.58054 NaN NaN NaN NaN NaN NaN NaN 170.92 1 166.14 165.64 166.64 -4.7898 0 0 0 0.21513 1 34722 34722 15.248 0.41021 1 + 20506 20548 13406 13411 20400 20400 -0.01862874162065964 IEVLSNGSLY 10 Unmodified _IEVLSNGSLY_ 0 0 0 ENSG00000166450|ENST00000389286|PRTG ENSG00000166450|ENST00000389286|PRTG ENSG00000166450|ENST00000389286|PRTG MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7904663085938 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 143.23 1 138.2 137.7 138.7 -5.0261 0 0 0 0.21574 1 27612 27612 25.399 6.1423 1 20507 5725 13407 13412 20401 20401 0.02250002032269549 IEVNEDGMEQP 11 Unmodified _IEVNEDGMEQP_ 0 0 0 REV__nc|ENSG00000212789|Q8NFI4|ST13P5 REV__nc|ENSG00000212789|Q8NFI4|ST13P5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7742919921875 2 630.774267 1259.53398 NaN NaN NaN NaN NaN NaN NaN 177.82 1 173.03 172.53 173.53 -4.7898 0 0 0 0.22943 1 36372 36372 8.7454 0.58988 1 + 20508 24262 13408 13413 20402 20402 -0.08540358784011914 IEVQTLITY 9 Unmodified _IEVQTLITY_ 0 0 0 ENSG00000166170|ENST00000299204|BAG5;nc|ENSG00000166170|Q9UL15-2|BAG5 ENSG00000166170|ENST00000299204|BAG5 ENSG00000166170|ENST00000299204|BAG5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.281005859375 2 540.30279 1078.59103 0.0092674 5.0072E-06 0.52623 0.00028433 0.5355 0.00028933 540.3025679267819 104.39 0.92117 100.17 99.621 100.54 -4.2183 55 26 3 0 0 0 0.52396 1 20589 20589 18.146 4.2403 1 3867500 20509 5698 13409 13414 20403 20403 0.054874765546856 IEVRKKRKGF 10 Unmodified _IEVRKKRKGF_ 0 0 0 REV__PAK4|p.A66Pfs*29|1|0.29|ENSG00000130669|chr19:39169746-39169746|G/-|frameshift_variant REV__PAK4|p.A66Pfs*29|1|0.29|ENSG00000130669|chr19:39169746-39169746|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7601318359375 2 630.898589 1259.78262 NaN NaN NaN NaN NaN NaN NaN 168.27 1 168.27 167.77 168.77 0 0 0 0 0.22588 1 34443 34443 6.7232 0.99131 1 + 20510 16024 13410 13415 20404 20404 0.1631244209631859 IEVSLPEAA 9 Unmodified _IEVSLPEAA_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25567626953125 2 464.752933 927.491313 0.12886 5.9888E-05 0.27372 0.00012721 0.40258 0.0001871 464.7529850439527 116.95 0.66608 116.95 116.61 117.27 0 31 18 2 0 0 0 0.11828 1 23029 23029 64.236 30.134 1 2834600 20511 7452 13411 13416 20405 20405 0.024666589407047468 IEVSLPEAA 9 Unmodified _IEVSLPEAA_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25067138671875 2 464.752933 927.491313 0.17687 8.2199E-05 0.15851 7.367E-05 0.33538 0.00015587 464.7530286414718 121.41 0.6773 116.86 116.49 117.17 -4.5476 34 18 3 0 0 0 0.11828 1 23911 23911 64.236 30.134 1 5522500 20512 7452 13411 13416 20406 20406 0.024666589407047468 IEVSLPEAA 9 Unmodified _IEVSLPEAA_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25433349609375 2 464.752933 927.491313 0.53119 0.00024687 -0.19884 -9.2413E-05 0.33234 0.00015446 464.75287109691175 121.65 0.84734 116.96 116.39 117.23 -4.6873 48 23 4 0 0 0 0.16539 1 23387 23387 54.774 12.679 1 4379800 20513 7452 13411 13416 20407 20407 0.024666589407047468 IEVSLPEAA 9 Unmodified _IEVSLPEAA_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2547912597656 2 464.752933 927.491313 0.33611 0.00015621 -0.39513 -0.00018364 -0.059021 -2.743E-05 464.752856697961 121.47 0.83105 116.94 116.5 117.33 -4.5305 47 22 3 0 0 0 0.094316 2 23377 23377;23427 74.423 30.134 1 5801600 20514 7452 13411 13416 20408;20409 20408 0.024666589407047468 IEVTFSPH 8 Unmodified _IEVTFSPH_ 0 0 0 ENST00000554130.5_1_14:96968887-96993844:+|nuORF ENST00000554130.5_1_14:96968887-96993844:+|nuORF ENST00000554130.5_1_14:96968887-96993844:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2392272949219 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 85.902 1 82.173 81.673 82.673 -3.7289 0 0 0 0.19954 1 16419 16419 24.674 10.092 1 20515 11214 13412 13417 20410 20410 -0.0016619051090174253 IEVVEDGAF 9 Unmodified _IEVVEDGAF_ 0 0 0 ENSG00000261594|ENST00000562197|TPBGL ENSG00000261594|ENST00000562197|TPBGL ENSG00000261594|ENST00000562197|TPBGL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2763671875 2 489.742565 977.470577 0.46739 0.0002289 -0.583 -0.00028552 -0.11561 -5.662E-05 489.7424314040045 90.264 0.25072 86.219 86.055 86.306 -4.0443 11 6 2 0 0 0 0.77732 1 17172 17172 7.9102 5.6074 1 522170 20516 7960 13413 13418 20411 20411 -0.01905931438943753 IEVVKLGHK 9 Unmodified _IEVVKLGHK_ 0 0 0 REV__nc|ENSG00000066827|Q9P243-4|ZFAT REV__nc|ENSG00000066827|Q9P243-4|ZFAT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.20770263671875 3 341.550082 1021.62842 -0.0073098 -2.4967E-06 -0.37565 -0.0001283 -0.38296 -0.0001308 341.5499708774381 77.994 0.56175 77.994 77.773 78.334 0 31 15 3 0 0 0 0.88425 1 15129 15129 0.20686 0 1 1502500 + 20517 14205 13414 13419 20412 20412 0.11846612610952434 IEWDYECE 8 Unmodified _IEWDYECE_ 0 0 0 nc|ENSG00000161888|Q8NBT2-2|SPC24;ENSG00000161888|ENST00000592540|SPC24;ENST00000423327.2_1_19:11257861-11259987:-|nuORF nc|ENSG00000161888|Q8NBT2-2|SPC24 nc|ENSG00000161888|Q8NBT2-2|SPC24 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.788818359375 2 543.707865 1085.40118 NaN NaN NaN NaN NaN NaN NaN 129.62 1 129.62 129.12 130.12 0 0 0 0 0.23782 1 25611 25611 0.063987 0 1 20518 5305 13415 13420 20413 20413 -0.13810758450017602 IEWGESLQ 8 Unmodified _IEWGESLQ_ 0 0 0 REV__ENSG00000033030|ENST00000633063|ZCCHC8 REV__ENSG00000033030|ENST00000633063|ZCCHC8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2326354980469 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 23.034 1 23.034 22.534 23.534 0 0 0 0 0.20462 1 3914 3914 21.747 0.20967 1 + 20519 14018 13416 13421 20414 20414 -0.026547982361194045 IEWNEIKY 8 Unmodified _IEWNEIKY_ 0 0 0 ENSG00000225180|ENST00000637878|PVALEF ENSG00000225180|ENST00000637878|PVALEF ENSG00000225180|ENST00000637878|PVALEF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7755126953125 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 68.514 1 65.123 64.623 65.623 -3.3903 0 0 0 0.21171 1 12935 12935 15.847 0 1 20520 7784 13417 13422 20415 20415 0.0013803672338781325 IEWRLAWL 8 Unmodified _IEWRLAWL_ 0 0 0 ENST00000379638.8_1_5:112213804-112213870:-|nuORF ENST00000379638.8_1_5:112213804-112213870:-|nuORF ENST00000379638.8_1_5:112213804-112213870:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7882690429688 2 543.808377 1085.6022 0.22567 0.00012272 -0.0084843 -4.6138E-06 0.21718 0.00011811 543.808303356675 115.35 0.7881 110.88 110.43 111.22 -4.4726 35 22 2 0 0 0 0.62642 1 22789 22789 20.454 0 1 2517800 20521 9302 13418 13423 20416 20416 0.06282343439443139 IEWRLAWL 8 Unmodified _IEWRLAWL_ 0 0 0 ENST00000379638.8_1_5:112213804-112213870:-|nuORF ENST00000379638.8_1_5:112213804-112213870:-|nuORF ENST00000379638.8_1_5:112213804-112213870:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.791748046875 2 543.808377 1085.6022 0.22123 0.00012031 0.38363 0.00020862 0.60486 0.00032893 543.8085587086148 115.19 0.96236 110.64 110.08 111.04 -4.555 40 26 2 0 0 0 0.52597 1 22160 22160 26.884 1.4843 1 2107300 20522 9302 13418 13423 20417 20417 0.06282343439443139 IEWRWRRRRVP 11 Unmodified _IEWRWRRRRVP_ 0 0 0 ENST00000574710.1_1_17:4843168-4843264:-|nuORF ENST00000574710.1_1_17:4843168-4843264:-|nuORF ENST00000574710.1_1_17:4843168-4843264:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 805.4686889648438 2 805.468567 1608.92258 NaN NaN NaN NaN NaN NaN NaN 65.252 1 65.252 64.752 65.752 0 0 0 0 0.23698 1 12576 12576 0.30703 0.30703 1 20523 11444 13419 13424 20418 20418 0.1424761915336603 IEYDGSILR 9 Unmodified _IEYDGSILR_ 0 0 0 REV__ENSG00000158014|ENST00000374276|SLC30A2 REV__ENSG00000158014|ENST00000374276|SLC30A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.281982421875 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 50.649 1 47.768 47.268 48.268 -2.8811 0 0 0 0.19512 1 9612 9612 12.241 0 1 + 20524 17318 13420 13425 20419 20419 0.020531352350417365 IEYENFILY 9 Unmodified _IEYENFILY_ 0 0 0 REV__ENSG00000186777|ENST00000419098|ZNF732 REV__ENSG00000186777|ENST00000419098|ZNF732 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3001708984375 2 602.300247 1202.58594 NaN NaN NaN NaN NaN NaN NaN 102.17 1 102.17 101.67 102.67 0 0 0 0 0.23508 1 20066 20066 8.5933 1.304 1 + 20525 19053 13421 13426 20420 20420 -0.007248273079312639 IEYHHQNF 8 Unmodified _IEYHHQNF_ 0 0 0 REV__ENST00000462445.1_1_10:70863984-70864131:+|nuORF REV__ENST00000462445.1_1_10:70863984-70864131:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7696533203125 2 544.251423 1086.48829 0.18035 9.8156E-05 -0.4286 -0.00023327 -0.24825 -0.00013511 544.7532538848185 44.53 0.16997 41.74 41.642 41.812 -2.79 6 4 2 0 0 0 0.98792 1 8358 8358 9.3474 0 1 1496700 + 20526 21905 13422 13427 20421 20421 -0.051491713934410654 IFATDKRE 8 Unmodified _IFATDKRE_ 0 0 0 REV__nc|ENSG00000121380|Q9BZR8-2|BCL2L14 REV__nc|ENSG00000121380|Q9BZR8-2|BCL2L14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.264892578125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 51.202 1 48.151 47.651 48.651 -3.0517 0 0 0 0.22847 1 9430 9430 10.074 0 1 + 20527 24017 13423 13428 20422 20422 0.02332883409144415 IFCIHFATI 9 Unmodified _IFCIHFATI_ 0 0 0 ENST00000461788.1_1_2:32740825-32744123:+|nuORF ENST00000461788.1_1_2:32740825-32744123:+|nuORF ENST00000461788.1_1_2:32740825-32744123:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2861328125 2 532.783513 1063.55247 0.090694 4.832E-05 -0.19361 -0.00010315 -0.10292 -5.4832E-05 533.2862337891361 133.24 0.20894 133.24 133.11 133.31 0 9 5 2 0 0 0 0.59384 1 26359 26359 13.508 1.8676 1 1036100 20528 10076 13424 13429 20423 20423 0.023238924391534965 IFEDRLSY 8 Unmodified _IFEDRLSY_ 0 0 0 ENST00000370689.6_1_1:84701395-84701596:+|nuORF ENST00000370689.6_1_1:84701395-84701596:+|nuORF ENST00000370689.6_1_1:84701395-84701596:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2647094726562 2 521.763832 1041.51311 0.53298 0.00027809 -3.2708 -0.0017066 -2.7379 -0.0014285 521.7622760806476 81.244 0.27904 81.244 81.056 81.335 0 10 7 2 0 0 0 0.25036 1 15812 15812 40.449 4.4044 1 829590 20529 9145 13425 13430 20424 20424 -0.0059853631069017865 IFEDRLSY 8 Unmodified _IFEDRLSY_ 0 0 0 ENST00000370689.6_1_1:84701395-84701596:+|nuORF ENST00000370689.6_1_1:84701395-84701596:+|nuORF ENST00000370689.6_1_1:84701395-84701596:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.272705078125 2 521.763832 1041.51311 -0.35212 -0.00018372 0.91525 0.00047755 0.56314 0.00029382 521.7642402678265 113.62 0.48281 109.17 109.01 109.49 -4.4538 20 13 2 0 0 0 8448 1 22358 22358 3.5871 1.8448 1 1968900 20530 9145 13425 13430 20425 20425 -0.0059853631069017865 IFEDRLSY 8 Unmodified _IFEDRLSY_ 0 0 0 ENST00000370689.6_1_1:84701395-84701596:+|nuORF ENST00000370689.6_1_1:84701395-84701596:+|nuORF ENST00000370689.6_1_1:84701395-84701596:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2672729492188 2 521.763832 1041.51311 0.6126 0.00031963 0.17929 9.3546E-05 0.79189 0.00041318 521.7636948256685 113.45 0.56236 109.18 108.91 109.48 -4.2726 27 15 2 0 0 0 8448 1 21816 21816 6.1918 1.4759 1 1350100 20531 9145 13425 13430 20426 20426 -0.0059853631069017865 IFEPSRSDRLY 11 Unmodified _IFEPSRSDRLY_ 0 0 0 REV__ENST00000445099.2_1_9:90431423-90431870:+|nuORF REV__ENST00000445099.2_1_9:90431423-90431870:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5429992675781 3 461.573614 1381.69901 0.04038 1.8638E-05 0.23617 0.00010901 0.27655 0.00012765 461.9080122653246 151.82 0.57268 147.07 146.78 147.35 -4.7523 36 15 3 0 0 0 0.5794 1 30156 30156 19.144 2.8694 1 4603400 + 20532 21746 13426 13431 20427 20427 0.02343241137964469 IFETEIKTL 9 Unmodified _IFETEIKTL_ 0 0 0 tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1 tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1 tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7691040039062 2 547.310615 1092.60668 0.12826 7.02E-05 0.53287 0.00029165 0.66114 0.00036185 547.3107762751087 144.79 0.54996 139.72 139.46 140.01 -5.0671 29 15 2 0 0 0 0.25183 1 27895 27895 34.402 0 1 5171600 20533 25895 13427 13432 20428 20428 0.06407763071729278 IFEYCQML 8 Unmodified _IFEYCQML_ 0 0 0 nc|ENSG00000120341|Q96JE7-3|SEC16B;ENST00000327037.8_1_1:177899723-177917737:-|nuORF;ENST00000464428.2_1_1:177898995-177929556:-|nuORF;ENST00000466953.6_1_1:177898995-177928232:-|nuORF;SEC16B|p.Y799Tfs*17|1|0.42|ENSG00000120341|chr1:177937322-177937322|A/-|frameshift_variant;ENSG00000120341|ENST00000308284|SEC16B nc|ENSG00000120341|Q96JE7-3|SEC16B nc|ENSG00000120341|Q96JE7-3|SEC16B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6962280273438 2 523.737914 1045.46127 NaN NaN NaN NaN NaN NaN NaN 154.16 1 148.94 148.44 149.44 -5.2209 0 0 0 0.21181 1 29885 29885 15.768 0.92995 1 20534 3133 13428 13433 20429 20429 -0.05963739320463901 IFFLFLPW 8 Unmodified _IFFLFLPW_ 0 0 0 REV__ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;REV__ENSG00000064687|ENST00000263094|ABCA7 REV__ENSG00000064687|ENST00000263094|ABCA7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2640991210938 2 541.807314 1081.60008 0.34795 0.00018852 -2.7878 -0.0015104 -2.4398 -0.0013219 542.3080545209019 140.06 0.10379 135.21 135.12 135.23 -4.8492 6 2 3 0 0 0 0.89687 1 26996 26996 3.2813 3.0298 1 1062500 + 20535 12892;14172 13429 13434 20430 20430 0.06253914701642316 IFFLMYTI 8 Unmodified _IFFLMYTI_ 0 0 0 REV__CRHR2|p.V328I|2|0.32|ENSG00000106113|chr7:30655651-30655651|C/T|missense_variant REV__CRHR2|p.V328I|2|0.32|ENSG00000106113|chr7:30655651-30655651|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6975708007812 2 524.282815 1046.55108 0.34609 0.00018145 -0.11638 -6.1017E-05 0.22971 0.00012043 524.2827729134066 64.699 0.76555 61.416 61.028 61.793 -3.2832 44 21 3 0 0 0 0.96284 1 12188 12188 19.439 13.707 1 4081300 + 20536 13582 13430 13435 20431 20431 0.029662583503977658 IFFNILVP 8 Unmodified _IFFNILVP_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9 nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.787353515625 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 153.15 1 147.88 147.38 148.38 -5.2669 0 0 0 0.2074 1 29684 29684 19.439 2.4967 1 20537 3930 13431 13436 20432 20432 0.08137037804942793 IFFYFVWIWG 10 Unmodified _IFFYFVWIWG_ 0 0 0 REV__SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant REV__SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2313232421875 3 459.905865 1376.69577 NaN NaN NaN NaN NaN NaN NaN 14.976 1 14.976 14.476 15.476 0 0 0 0 2.8426 1 2260 2260 0.043787 0.043787 1 + 20538 24640 13432 13437 20433 20433 0.022486428218826404 IFHYRQYKWVI 11 Unmodified _IFHYRQYKWVI_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 518.3273315429688 3 518.285628 1551.83505 NaN NaN NaN NaN NaN NaN NaN 130.22 1 125.58 125.08 126.08 -4.6359 0 0 0 0.22632 1 25664 25664 1.4551 1.2831 1 + 20539 14585 13433 13438 20434 20434 0.0812098043925289 IFIAALVRY 9 Unmodified _IFIAALVRY_ 0 0 0 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2706909179688 2 533.326402 1064.63825 -0.20461 -0.00010912 0.38727 0.00020654 0.18266 9.7419E-05 533.3266585741756 61.202 0.48499 61.202 60.946 61.431 0 27 13 3 0 0 0 0.53499 1 11739 11739 2.6312 2.223 1 1877700 20540 5993 13434 13439 20435 20435 0.10851800616319451 IFIAALVRY 9 Unmodified _IFIAALVRY_ 0 0 0 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 533.326402 1064.63825 0.10761 5.7393E-05 0.30303 0.00016161 0.41064 0.00021901 533.3265448285131 64.524 0.52319 61.526 61.255 61.778 -2.9975 0.13676 0.00015832 NaN 2.6312 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2439000 20541 5993 13434 13439 0.10851800616319451 IFIAALVRY 9 Unmodified _IFIAALVRY_ 0 0 0 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 533.326402 1064.63825 0.59037 0.00031486 -0.2809 -0.00014981 0.30946 0.00016504 533.3261972247174 64.922 0.52391 61.464 61.192 61.716 -3.4581 0.074291 -0.00046454 NaN 2.6312 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1880000 20542 5993 13434 13439 0.10851800616319451 IFIEMYFI 8 Unmodified _IFIEMYFI_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2171630859375 3 359.189273 1074.54599 -0.41498 -0.00014906 0.40273 0.00014465 -0.012255 -4.402E-06 359.18933198676956 36.487 0.84811 34.149 33.709 34.557 -2.3375 66 23 4 0 0 0 0.80867 1 6424 6424 3.9444 0.068064 1 4051100 20543 1552 13435 13440 20436 20436 0.01169954487772884 IFIEMYFI 8 Unmodified _IFIEMYFI_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 359.189273 1074.54599 -0.25029 -8.99E-05 0.2018 7.2484E-05 -0.048487 -1.7416E-05 359.1893353573025 34.211 1.0786 34.211 33.508 34.587 0 0.047268 -7.3431E-05 NaN 3.9444 52 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3529900 20544 1552 13435 13440 0.01169954487772884 IFIEMYFI 8 Unmodified _IFIEMYFI_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.189273 1074.54599 -0.68514 -0.0002461 0.69789 0.00025068 0.012754 4.581E-06 359.1894785755834 36.6 0.80766 34.138 33.734 34.542 -2.4623 -0.025842 0.00046115 NaN 3.9444 64 22 4 NaN NaN NaN NaN 0 NaN NaN 0 6229600 20545 1552 13435 13440 0.01169954487772884 IFIEMYFI 8 Unmodified _IFIEMYFI_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.189273 1074.54599 0.12368 4.4425E-05 -0.2175 -7.8123E-05 -0.093816 -3.3698E-05 359.18917516464995 36.505 0.75947 34.157 33.723 34.482 -2.3479 -0.0067342 -0.00052525 NaN 3.9444 53 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6016900 20546 1552 13435 13440 0.01169954487772884 IFIFMIKGKF 10 Unmodified _IFIFMIKGKF_ 0 0 0 REV__P4HB|p.L287M|1|0.36|ENSG00000185624|chr17:81846626-81846626|G/T|missense_variant REV__P4HB|p.L287M|1|0.36|ENSG00000185624|chr17:81846626-81846626|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.759765625 2 622.367213 1242.71987 NaN NaN NaN NaN NaN NaN NaN 72.662 1 69.035 68.535 69.535 -3.6275 0 0 0 0.22588 1 13722 13722 3.9444 0.94915 1 + 20547 24423 13436 13441 20437 20437 0.10822159983899837 IFIMALFLAL 10 Unmodified _IFIMALFLAL_ 0 0 0 nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8;ENST00000541225.5_1_17:66883094-66937097:-|nuORF;ABCA8|p.L1128*|1|0.37|ENSG00000141338|chr17:68885242-68885242|A/-|frameshift_variant nc|ENSG00000141338|O94911-1|ABCA8 nc|ENSG00000141338|O94911-1|ABCA8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3297119140625 2 576.348489 1150.68242 NaN NaN NaN NaN NaN NaN NaN 151.68 1 146.5 146 147 -5.1759 0 0 0 2.8426 1 29396 29396 0.013265 0 1 20548 4355 13437 13442 20438 20438 0.1131106871830525 IFIVEVCTY 9 Unmodified _IFIVEVCTY_ 0 0 0 REV__GLRB|p.T261I|1|0.13|ENSG00000109738|chr4:157143837-157143837|C/T|missense_variant REV__GLRB|p.T261I|1|0.13|ENSG00000109738|chr4:157143837-157143837|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.772216796875 2 543.780636 1085.54672 0.68206 0.00037089 -3.7018 -0.002013 -3.0197 -0.0016421 544.2795955847763 103.72 0.31602 103.72 103.47 103.79 0 9 8 2 0 0 0 0.67345 1 20336 20336 26.341 15.227 1 1138900 + 20549 23578 13438 13443 20439 20439 0.007367491368313495 IFIVEVCTY 9 Unmodified _IFIVEVCTY_ 0 0 0 REV__GLRB|p.T261I|1|0.13|ENSG00000109738|chr4:157143837-157143837|C/T|missense_variant REV__GLRB|p.T261I|1|0.13|ENSG00000109738|chr4:157143837-157143837|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7843017578125 2 543.780636 1085.54672 NaN NaN NaN NaN NaN NaN NaN 91.059 1 87.251 86.751 87.751 -3.8083 0 0 0 0.19246 1 17430 17430 0.40827 0 1 + 20550 23578 13438 13443 20440 20440 0.007367491368313495 IFKDRFFWRLH 11 Unmodified _IFKDRFFWRLH_ 0 0 0 MMP13|p.I370Nfs*3|1|0.33|ENSG00000137745|chr11:102947993-102947994|-/T|frameshift_variant;ENSG00000137745|ENST00000260302|MMP13 MMP13|p.I370Nfs*3|1|0.33|ENSG00000137745|chr11:102947993-102947994|-/T|frameshift_variant MMP13|p.I370Nfs*3|1|0.33|ENSG00000137745|chr11:102947993-102947994|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2738037109375 3 522.289372 1563.84629 NaN NaN NaN NaN NaN NaN NaN 155.56 1 150.27 149.77 150.77 -5.2854 0 0 0 0.22632 1 30171 30171 0.50596 0.41111 1 20551 4102 13439 13444 20441 20441 0.08691802533394366 IFKKIRRKR 9 Unmodified _IFKKIRRKR_ 0 0 0 ENSG00000130560|ENST00000371756|UBAC1;ENST00000465873.5_1_9:138834060-138837107:-|nuORF;ENST00000471163.1_1_9:138834060-138839712:-|nuORF ENSG00000130560|ENST00000371756|UBAC1 ENSG00000130560|ENST00000371756|UBAC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7750854492188 2 622.924941 1243.83533 0.40834 0.00025437 3.9092 0.0024351 4.3175 0.0026895 622.9276827923984 163.83 0.13556 163.83 163.75 163.89 0 5 3 2 0 0 0 0.88278 1 33043 33043 2.0598 0.40713 1 11990000 20552 3618 13440 13445 20442 20442 0.22316444949751713 IFKKKKRKGQ 10 Unmodified _IFKKKKRKGQ_ 0 0 0 nc|nan|Q8NDD1-6|C1orf131;ENSG00000143633|ENST00000366649|C1orf131;nc|nan|Q8NDD1-5|C1orf131 nc|nan|Q8NDD1-6|C1orf131 nc|nan|Q8NDD1-6|C1orf131 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.76416015625 2 630.916781 1259.81901 NaN NaN NaN NaN NaN NaN NaN 58.585 1 55.38 54.88 55.88 -3.2052 0 0 0 0.22588 1 10935 10935 1.6526 0.17072 1 20553 4509 13441 13446 20443 20443 0.19949318993008092 IFKKTRKKVI 10 Unmodified _IFKKTRKKVI_ 0 0 0 REV__ENST00000510078.5_1_3:129115194-129117890:-|nuORF REV__ENST00000510078.5_1_3:129115194-129117890:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.767333984375 2 630.929357 1259.84416 0.42914 0.00027076 1.1063 0.00069798 1.5354 0.00096874 631.4328771806335 165.81 0.17207 160.83 160.77 160.95 -4.9811 5 4 2 0 0 0 0.91149 1 32436 32436 1.8442 0 1 7063600 + 20554 16796 13442 13447 20444 20444 0.2246337379558554 IFKLIAPKL 9 Unmodified _IFKLIAPKL_ 0 0 0 SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant;nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1 SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.281005859375 2 521.854796 1041.69504 -0.2339 -0.00012206 1.259 0.00065703 1.0251 0.00053497 521.8537924090662 133.92 0.10669 129.28 129.21 129.32 -4.6399 4 2 2 0 0 0 0.87788 1 26394 26394 5.2307 0 1 509150 20555 6194 13443 13448 20445 20445 0.17585848172848273 IFKVLNDI 8 Unmodified _IFKVLNDI_ 0 0 0 tr|U7SZV2|U7SZV2_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accDPE=3SV=1 tr|U7SZV2|U7SZV2_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accDPE=3SV=1 tr|U7SZV2|U7SZV2_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accDPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7666015625 2 481.289485 960.564418 0.05407 2.6023E-05 -0.10044 -4.8341E-05 -0.04637 -2.2318E-05 481.2894826071891 136.59 0.77408 131.95 131.53 132.31 -4.6399 40 21 3 0 0 0 0.70613 1 26870 26870 13.508 4.1604 1 2700900 20556 26304 13444 13449 20446 20446 0.08255832453971834 IFKVNDLAE 9 Unmodified _IFKVNDLAE_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 350.1955261230469 3 350.193963 1047.56006 NaN NaN NaN NaN NaN NaN NaN 118.66 1 118.66 118.16 119.16 0 0 0 0 0.23508 1 23370 23370 2.7352 0.82882 1 20557 5053 13445 13450 20447 20447 0.038183232404207956 IFLDATTGKV 10 Unmodified _IFLDATTGKV_ 0 0 0 nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN;nc|ENSG00000167693|Q6DKJ4-2|NXN;ENST00000575455.5_1_17:722628-800182:-|nuORF;ENST00000575171.1_1_17:729096-882585:-|nuORF nc|ENSG00000167693|Q6DKJ4-3|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2662353515625 2 532.802957 1063.59136 0.76082 0.00040537 -0.84339 -0.00044936 -0.08257 -4.3994E-05 532.8026436364971 107.12 0.85845 102.98 102.49 103.35 -4.135 44 24 3 0 0 0 0.47611 1 20535 20535 6.6304 0 1 2851600 20558 5834 13446 13451 20448 20448 0.06210896274501465 IFLHWRKNLRW 11 Unmodified _IFLHWRKNLRW_ 0 0 0 TEX38|p.R44W|1|0.4|ENSG00000186118|chr1:46672965-46672965|C/T|missense_variant TEX38|p.R44W|1|0.4|ENSG00000186118|chr1:46672965-46672965|C/T|missense_variant TEX38|p.R44W|1|0.4|ENSG00000186118|chr1:46672965-46672965|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3939819335938 2 784.951687 1567.88882 NaN NaN NaN NaN NaN NaN NaN 133.47 1 133.47 132.97 133.97 0 0 0 0 0.22632 1 26408 26408 0.094841 0 1 20559 25837 13447 13452 20449 20449 0.12759197661625876 IFLICFLVLY 10 Unmodified _IFLICFLVLY_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7684326171875 2 622.361596 1242.70864 0.5455 0.0003395 1.6725 0.0010409 2.218 0.0013804 622.8622915491219 70.633 0.34974 67.166 66.919 67.269 -3.467 16 9 2 0 0 0 0.75442 1 13386 13386 4.3292 0 1 2057500 20560 7476 13448 13453 20450 20450 0.09699337889765047 IFLKLLLLA 9 Unmodified _IFLKLLLLA_ 0 0 0 REV__NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant REV__NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2651977539062 2 522.364996 1042.71544 NaN NaN NaN NaN NaN NaN NaN 146.82 1 146.82 146.32 147.32 0 0 0 0 0.19626 1 29365 29365 0.0033805 0 1 + 20561 17436 13449 13454 20451 20451 0.1957901883267823 IFLLIECLST 10 Unmodified _IFLLIECLST_ 0 0 0 REV__ENSG00000169327|ENST00000304418|OR5AU1 REV__ENSG00000169327|ENST00000304418|OR5AU1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3223876953125 2 576.322668 1150.63078 NaN NaN NaN NaN NaN NaN NaN 122.77 1 118.18 117.68 118.68 -4.5926 0 0 0 2.8426 1 23634 23634 0.063865 0 1 + 20562 18096 13450 13455 20452 20452 0.06149280233717036 IFLLILHLL 9 Unmodified _IFLLILHLL_ 0 0 0 ENST00000426837.6_1_3:48019393-48040244:-|nuORF ENST00000426837.6_1_3:48019393-48040244:-|nuORF ENST00000426837.6_1_3:48019393-48040244:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7673950195312 2 547.870446 1093.72634 NaN NaN NaN NaN NaN NaN NaN 91.529 1 91.529 91.029 92.029 0 0 0 0 0.23508 1 17888 17888 2.3027 0 1 20563 9732 13451 13456 20453 20453 0.18322421206949002 IFLLILHLL 9 Unmodified _IFLLILHLL_ 0 0 0 ENST00000426837.6_1_3:48019393-48040244:-|nuORF ENST00000426837.6_1_3:48019393-48040244:-|nuORF ENST00000426837.6_1_3:48019393-48040244:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.78564453125 2 547.870446 1093.72634 NaN NaN NaN NaN NaN NaN NaN 114.94 1 110.63 110.13 111.13 -4.3136 0 0 0 0.23508 1 22129 22129 5.2307 0 1 20564 9732 13451 13456 20454 20454 0.18322421206949002 IFLNNIIV 8 Unmodified _IFLNNIIV_ 0 0 0 REV__ENST00000371432.7_1_6:45515222-45515519:+|nuORF REV__ENST00000371432.7_1_6:45515222-45515519:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 473.27557373046875 2 473.292028 944.569503 NaN NaN NaN NaN NaN NaN NaN 68.649 1 65.259 64.759 65.759 -3.3903 0 0 0 0.23025 1 12965 12965 0.68139 0 1 + 20565 21004 13452 13457 20455 20455 0.09500136316603403 IFLTLGLKQ 9 Unmodified _IFLTLGLKQ_ 0 0 0 CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant;ENSG00000071991|ENST00000262150|CDH19 CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.21185302734375 3 344.886582 1031.63792 -0.032063 -1.1058E-05 -0.085283 -2.9413E-05 -0.11735 -4.0471E-05 344.8864967154416 121.25 0.9946 116.7 116.28 117.28 -4.5475 104 27 5 0 0 0 0.39231 1 23933 23933 4.477 1.5944 1 49379000 20566 461 13453 13458 20456 20456 0.12336380896454102 IFLTLGLKQ 9 Unmodified _IFLTLGLKQ_ 0 0 0 CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant;ENSG00000071991|ENST00000262150|CDH19 CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 344.886582 1031.63792 0.58319 0.00020114 -0.76278 -0.00026307 -0.17958 -6.1935E-05 344.88627155478247 121.44 1.3692 116.75 116.04 117.4 -4.6873 -0.02714 -0.00055088 NaN 4.477 122 38 5 NaN NaN NaN NaN 0 NaN NaN 0 45758000 20567 461 13453 13458 0.12336380896454102 IFLTLGLKQ 9 Unmodified _IFLTLGLKQ_ 0 0 0 CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant;ENSG00000071991|ENST00000262150|CDH19 CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant CDH19|p.P710Rfs*20|1|0.25|ENSG00000071991|chr18:66505004-66505004|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 344.886582 1031.63792 -0.3487 -0.00012026 0.23921 8.25E-05 -0.10949 -3.7761E-05 344.88662596888514 121.42 1.0826 116.89 116.36 117.44 -4.5305 0.10635 0.00048583 NaN 4.477 92 29 4 NaN NaN NaN NaN 0 NaN NaN 0 43700000 20568 461 13453 13458 0.12336380896454102 IFNSEHQVL 9 Unmodified _IFNSEHQVL_ 0 0 0 TNFSF18|p.N183Ifs*10|1|0.15|ENSG00000120337|chr1:173041419-173041419|T/-|frameshift_variant;ENSG00000120337|ENST00000404377|TNFSF18 TNFSF18|p.N183Ifs*10|1|0.15|ENSG00000120337|chr1:173041419-173041419|T/-|frameshift_variant TNFSF18|p.N183Ifs*10|1|0.15|ENSG00000120337|chr1:173041419-173041419|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7825927734375 2 543.782556 1085.55056 0.27971 0.0001521 -0.05544 -3.0147E-05 0.22427 0.00012196 543.7823818997401 89.349 0.56057 85.571 85.347 85.908 -3.7779 27 15 2 0 0 0 0.37087 1 17096 17096 4.7159 2.0847 1 2410500 20569 3132 13454 13459 20457 20457 0.01120554954900399 IFNVAEILY 9 Unmodified _IFNVAEILY_ 0 0 0 REV__tr|U7T490|U7T490_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00385PE=4SV=1 REV__tr|U7T490|U7T490_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00385PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2743530273438 2 541.30005 1080.58555 NaN NaN NaN NaN NaN NaN NaN 133.89 1 129.07 128.57 129.57 -4.8175 0 0 0 0.22251 1 25770 25770 16.942 7.5949 1 + 20570 25389 13455 13460 20458 20458 0.04847797762840855 IFQVRHTY 8 Unmodified _IFQVRHTY_ 0 0 0 nc|ENSG00000152214|Q99578-2|RIT2;RIT2|p.F160Lfs*18|3|0.21|ENSG00000152214|chr18:42743667-42743667|A/-|frameshift_variant;ENSG00000152214|ENST00000326695|RIT2 nc|ENSG00000152214|Q99578-2|RIT2 nc|ENSG00000152214|Q99578-2|RIT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2693481445312 2 532.287808 1062.56106 0.7679 0.00040874 -1.2542 -0.00066762 -0.48634 -0.00025887 532.2871512629525 104.35 0.78016 100.3 99.839 100.62 -4.0543 50 21 3 0 0 0 0.56049 1 20082 20082 24.674 1.9376 1 4826700 20571 4908 13456 13461 20459 20459 0.03228582399992774 IFREFEQL 8 Unmodified _IFREFEQL_ 0 0 0 CYP1B1|p.V257I|1|0.29|ENSG00000138061|chr2:38074620-38074620|C/T|missense_variant CYP1B1|p.V257I|1|0.29|ENSG00000138061|chr2:38074620-38074620|C/T|missense_variant CYP1B1|p.V257I|1|0.29|ENSG00000138061|chr2:38074620-38074620|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2711791992188 2 541.287474 1080.5604 0.12563 6.8005E-05 -0.17768 -9.6177E-05 -0.052047 -2.8172E-05 541.2872295151745 136.97 0.69952 132.05 131.67 132.37 -4.9215 51 19 3 0 0 0 0.45067 1 26356 26356 30.225 1.738 1 6431000 20572 764 13457 13462 20460 20460 0.023337429602634074 IFSDQRVTL 9 Unmodified _IFSDQRVTL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 103 1 98.814 98.314 99.314 -4.1861 0 0 0 0.23508 1 20248 20248 8.1555 0.24537 1 20573 3487 13458 13463 20461 20461 0.0461712798901317 IFSLCDDYDPG 11 Unmodified _IFSLCDDYDPG_ 0 0 0 ENSG00000162975|ENST00000295082|KCNF1 ENSG00000162975|ENST00000295082|KCNF1 ENSG00000162975|ENST00000295082|KCNF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7544555664062 2 622.760629 1243.5067 NaN NaN NaN NaN NaN NaN NaN 64.405 1 64.405 63.905 64.905 0 0 0 0 0.23264 1 12399 12399 6.2058 2.6093 1 20574 5388 13459 13464 20462 20462 -0.10530842324419609 IFSLCDDYDPG 11 Unmodified _IFSLCDDYDPG_ 0 0 0 ENSG00000162975|ENST00000295082|KCNF1 ENSG00000162975|ENST00000295082|KCNF1 ENSG00000162975|ENST00000295082|KCNF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.758056640625 2 622.760629 1243.5067 NaN NaN NaN NaN NaN NaN NaN 67.815 1 64.488 63.988 64.988 -3.3268 0 0 0 0.23264 1 12791 12791 6.2058 0.47393 1 20575 5388 13459 13464 20463 20463 -0.10530842324419609 IFSTVEHF 8 Unmodified _IFSTVEHF_ 0 0 0 KCNV1|p.Y365H|1|0.25|ENSG00000164794|chr8:109968498-109968498|A/G|missense_variant KCNV1|p.Y365H|1|0.25|ENSG00000164794|chr8:109968498-109968498|A/G|missense_variant KCNV1|p.Y365H|1|0.25|ENSG00000164794|chr8:109968498-109968498|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2767028808594 2 490.247818 978.481082 NaN NaN NaN NaN NaN NaN NaN 148.72 1 144.01 143.51 144.51 -4.7095 0 0 0 0.21486 1 29533 29533 10.183 0.83596 1 20576 11983 13460 13465 20464 20464 -0.00901903993860742 IFTCYLIG 8 Unmodified _IFTCYLIG_ 0 0 0 REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.241943359375 2 465.243689 928.472826 NaN NaN NaN NaN NaN NaN NaN 124.3 1 119.57 119.07 120.07 -4.731 0 0 0 0.2343 1 23872 23872 0.063987 0 1 + 20577 18363 13461 13466 20465 20465 0.005728257651639979 IFTEVVDGT 9 Unmodified _IFTEVVDGT_ 0 0 0 REV__nc|ENSG00000038382|O75962-2|TRIO REV__nc|ENSG00000038382|O75962-2|TRIO MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2743225097656 2 490.75039 979.486227 0.19476 9.5578E-05 0.32737 0.00016066 0.52213 0.00025623 490.75053775255617 151.3 0.28195 151.3 151.13 151.41 0 12 7 2 0 0 0 0.79204 1 30308 30308 11.64 0 1 994630 + 20578 14040 13462 13467 20466 20466 -0.004336449219067617 IFTKVFLI 8 Unmodified _IFTKVFLI_ 0 0 0 ENSG00000116199|ENST00000263733|FAM20B ENSG00000116199|ENST00000263733|FAM20B ENSG00000116199|ENST00000263733|FAM20B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2552185058594 2 490.812596 979.61064 0.36105 0.00017721 0.052152 2.5597E-05 0.4132 0.0002028 490.8125385013202 98.719 0.62337 98.719 98.333 98.956 0 36 17 3 0 0 0 1.0273 1 19356 19356 2.3027 2.3027 1 3556200 20579 2915 13463 13468 20467 20467 0.12001897356083191 IFTSTIVAK 9 Unmodified _IFTSTIVAK_ 0 0 0 nc|ENSG00000197891|Q96S37-2|SLC22A12;nc|ENSG00000197891|Q96S37-4|SLC22A12;ENSG00000197891|ENST00000377574|SLC22A12 nc|ENSG00000197891|Q96S37-2|SLC22A12 nc|ENSG00000197891|Q96S37-2|SLC22A12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26690673828125 2 490.294768 978.574983 NaN NaN NaN NaN NaN NaN NaN 165.23 1 160.28 159.78 160.78 -4.9484 0 0 0 0.19649 1 32273 32273 0.40827 0 1 20580 12545 13464 13469 20468 20468 0.08483815108422732 IFVEKYDPM 9 Unmodified _IFVEKYDPM_ 0 0 0 RAP1B|p.T35M|1|0.32|ENSG00000127314|chr12:68650446-68650446|C/T|missense_variant RAP1B|p.T35M|1|0.32|ENSG00000127314|chr12:68650446-68650446|C/T|missense_variant RAP1B|p.T35M|1|0.32|ENSG00000127314|chr12:68650446-68650446|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2085876464844 3 381.191454 1140.55253 NaN NaN NaN NaN NaN NaN NaN 65.488 1 62.205 61.705 62.705 -3.2832 0 0 0 0.23508 1 12312 12312 7.609 0.97858 1 20581 12860 13465 13470 20469 20469 -0.012121523515133958 IFVGAGVG 8 Unmodified _IFVGAGVG_ 0 0 0 REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2083435058594 2 360.207964 718.401375 NaN NaN NaN NaN NaN NaN NaN 29.973 1 29.973 29.473 30.473 0 0 0 0 0.23711 1 5377 5377 0.12286 0.11459 1 + 20582 24819 13466 13471 20470 20470 0.030910741228126426 IFVLMVLFP 9 Unmodified _IFVLMVLFP_ 0 0 0 REV__SLC36A1|p.L207M|1|0.39|ENSG00000123643|chr5:151467821-151467821|C/A|missense_variant REV__SLC36A1|p.L207M|1|0.39|ENSG00000123643|chr5:151467821-151467821|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2174987792969 3 360.217163 1077.62966 NaN NaN NaN NaN NaN NaN NaN 169.43 1 169.43 168.93 169.93 0 0 0 0 0.23508 1 34779 34779 0.26902 0 1 + 20583 24639 13467 13472 20471 20471 0.0939511065548686 IFYEWRKMHRR 11 Unmodified _IFYEWRKMHRR_ 0 0 0 REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3857421875 2 811.430261 1620.84597 0.4923 0.00039947 -3.5086 -0.002847 -3.0163 -0.0024475 811.4287612203591 174.93 0.20277 174.93 174.76 174.96 0 6 5 2 0 0 0 0.82427 1 36211 36211 1.1933 0.88631 1 8906900 + 20584 19442 13468 13473 20472 20472 0.06038059541879193 IFYEWRKMHRR 11 Unmodified _IFYEWRKMHRR_ 0 0 0 REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2688598632812 3 541.289266 1620.84597 NaN NaN NaN NaN NaN NaN NaN 129.3 1 129.3 128.8 129.8 0 0 0 0 0.22632 1 25542 25542 0.026206 0 1 + 20585 19442 13468 13473 20473 20473 0.06038059541879193 IFYIVRNLN 9 Unmodified _IFYIVRNLN_ 0 0 0 REV__nc|ENSG00000166821|O75192-2|PEX11A REV__nc|ENSG00000166821|O75192-2|PEX11A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3304443359375 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 163.3 1 158.23 157.73 158.73 -5.0648 0 0 0 0.19246 1 31770 31770 0.12781 0 1 + 20586 17875 13469 13474 20474 20474 0.08057997639662062 IFYQWWRTWPS 11 Unmodified _IFYQWWRTWPS_ 0 0 0 REV__OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant REV__OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3847045898438 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 163.27 1 158.48 157.98 158.98 -4.7898 0 0 0 0.23698 1 32537 32537 1.3295 0 1 + 20587 24408 13470 13475 20475 20475 -0.005158718658321959 IFYRLSHLPV 10 Unmodified _IFYRLSHLPV_ 0 0 0 REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7647705078125 2 622.861141 1243.70773 NaN NaN NaN NaN NaN NaN NaN 64.65 1 64.65 64.15 65.15 0 0 0 0 0.22588 1 12448 12448 4.3292 0 1 + 20588 19181 13471 13476 20476 20476 0.09562259565086606 IFYRLSHLPV 10 Unmodified _IFYRLSHLPV_ 0 0 0 REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7630004882812 2 622.861141 1243.70773 NaN NaN NaN NaN NaN NaN NaN 64.885 1 64.885 64.385 65.385 0 0 0 0 0.22588 1 12496 12496 7.9102 1.187 1 + 20589 19181 13471 13476 20477 20477 0.09562259565086606 IFYYVRYFDFH 11 Unmodified _IFYYVRYFDFH_ 0 0 0 ENST00000492560.6_1_7:139529050-139575514:+|nuORF ENST00000492560.6_1_7:139529050-139575514:+|nuORF ENST00000492560.6_1_7:139529050-139575514:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3804931640625 2 785.379894 1568.74524 NaN NaN NaN NaN NaN NaN NaN 132.21 1 127.57 127.07 128.07 -4.6399 0 0 0 0.22632 1 26061 26061 1.4551 1.4492 1 20590 10538 13472 13477 20478 20478 -0.01638693959966986 IGACVARIQ 9 Unmodified _IGACVARIQ_ 0 0 0 nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000464333.5_1_22:32012607-32014401:+|nuORF;ENST00000382162.7_1_22:32002284-32014401:+|nuORF nc|ENSG00000198089|A8K8P3-5|SFI1 nc|ENSG00000198089|A8K8P3-5|SFI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2497253417969 2 465.763112 929.511671 0.27647 0.00012877 -0.49392 -0.00023005 -0.21746 -0.00010128 465.7628817693494 71.704 0.56469 68.077 67.737 68.301 -3.6275 29 15 2 0 0 0 0.54076 1 13549 13549 26.884 2.2098 1 2564600 20591 7428 13473 13478 20479 20479 0.04409551119533717 IGAEAVVNV 9 Unmodified _IGAEAVVNV_ 0 0 0 REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21502685546875 2 436.247818 870.481082 0.070063 3.0565E-05 0.10882 4.7475E-05 0.17889 7.8039E-05 436.2477687502615 139.12 0.80818 134.27 133.86 134.67 -4.8492 61 22 3 0 0 0 0.32428 1 26810 26810 30.225 3.3412 1 8264000 + 20592 24928 13474 13479 20480 20480 0.040660960061472906 IGAEAVVNV 9 Unmodified _IGAEAVVNV_ 0 0 0 REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 436.247818 870.481082 0.15948 6.9572E-05 -0.070314 -3.0674E-05 0.089163 3.8897E-05 436.24768873122025 134.22 0.73177 134.22 133.87 134.6 0 0.013083 -0.00010404 NaN 30.225 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6312300 + 20593 24928 13474 13479 0.040660960061472906 IGAEAVVNV 9 Unmodified _IGAEAVVNV_ 0 0 0 REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.247818 870.481082 -0.10424 -4.5476E-05 0.20382 8.8917E-05 0.099579 4.3441E-05 436.2478246413397 138.79 0.74301 134.14 133.74 134.48 -4.6439 -0.064188 0.00013515 NaN 30.225 54 20 3 NaN NaN NaN NaN 0 NaN NaN 0 11031000 + 20594 24928 13474 13479 0.040660960061472906 IGAEAVVNV 9 Unmodified _IGAEAVVNV_ 0 0 0 REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 436.247818 870.481082 0.036074 1.5737E-05 -0.024478 -1.0678E-05 0.011596 5.0589E-06 436.24773287626635 139.15 0.78676 134.2 133.85 134.64 -4.952 -0.0087745 -6.4045E-05 NaN 30.225 54 21 3 NaN NaN NaN NaN 0 NaN NaN 0 11099000 + 20595 24928 13474 13479 0.040660960061472906 IGAEAVVNV 9 Unmodified _IGAEAVVNV_ 0 0 0 REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 REV__tr|U7SKA1|U7SKA1_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02156PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 436.247818 870.481082 0.070063 3.0565E-05 0.10882 4.7475E-05 0.17889 7.8039E-05 436.2477687502615 139.12 0.80818 134.27 133.86 134.67 -4.8492 0.05988 5.226E-05 NaN 30.225 61 22 3 NaN NaN NaN NaN 0 NaN NaN 0 8264000 + 20596 24928 13474 13479 0.040660960061472906 IGAFKNLVDIN 11 Unmodified _IGAFKNLVDIN_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2922973632812 2 602.340238 1202.66592 NaN NaN NaN NaN NaN NaN NaN 126.14 1 126.14 125.64 126.64 0 0 0 0 0.22501 1 24891 24891 12.241 1.4167 1 20597 2813 13475 13480 20481 20481 0.07269659085886815 IGARQSVSAPP 11 Unmodified _IGARQSVSAPP_ 0 0 0 REV__nc|ENSG00000148358|Q5VW38|GPR107 REV__nc|ENSG00000148358|Q5VW38|GPR107 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2765502929688 2 541.80128 1081.58801 0.52251 0.0002831 -0.80903 -0.00043834 -0.28652 -0.00015524 541.8008678878074 50.078 0.41156 50.078 49.788 50.2 0 15 11 2 0 0 0 0.87547 1 9473 9473 19.257 9.8739 1 751780 + 20598 24090 13476 13481 20482 20482 0.050476462205324424 IGASLADVDP 10 Unmodified _IGASLADVDP_ 0 0 0 ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ATAD2|p.P460Qfs*32|1|0.42|ENSG00000156802|chr8:123359224-123359224|G/-|frameshift_variant;ENST00000521903.5_1_8:124361561-124413087:-|nuORF ENSG00000156802|ENST00000287394|ATAD2 ENSG00000156802|ENST00000287394|ATAD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7237548828125 2 479.248015 956.481476 0.18288 8.7645E-05 0.19072 9.1403E-05 0.3736 0.00017905 479.24804976286276 76.44 0.66425 76.44 76.03 76.694 0 27 18 2 0 0 0 0.83242 1 14863 14863 20.454 11.071 1 1121200 20599 5104 13477 13482 20483 20483 0.001494709353323742 IGASLADVDP 10 Unmodified _IGASLADVDP_ 0 0 0 ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ATAD2|p.P460Qfs*32|1|0.42|ENSG00000156802|chr8:123359224-123359224|G/-|frameshift_variant;ENST00000521903.5_1_8:124361561-124413087:-|nuORF ENSG00000156802|ENST00000287394|ATAD2 ENSG00000156802|ENST00000287394|ATAD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7210998535156 2 479.248015 956.481476 0.048694 2.3337E-05 -0.04389 -2.1034E-05 0.0048041 2.3023E-06 479.24792330734624 79.777 0.77704 76.267 75.943 76.72 -3.5102 32 21 2 0 0 0 0.83242 1 15558 15558 14.838 6.0929 1 1716600 20600 5104 13477 13482 20484 20484 0.001494709353323742 IGASLADVDP 10 Unmodified _IGASLADVDP_ 0 0 0 ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ATAD2|p.P460Qfs*32|1|0.42|ENSG00000156802|chr8:123359224-123359224|G/-|frameshift_variant;ENST00000521903.5_1_8:124361561-124413087:-|nuORF ENSG00000156802|ENST00000287394|ATAD2 ENSG00000156802|ENST00000287394|ATAD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73126220703125 2 479.248015 956.481476 -0.16255 -7.7904E-05 0.067064 3.214E-05 -0.09549 -4.5763E-05 479.24799640458906 80.046 0.7928 76.37 76.009 76.802 -3.676 34 22 2 0 0 0 0.77872 1 15247 15247 20.454 1.1966 1 1491400 20601 5104 13477 13482 20485 20485 0.001494709353323742 IGASVDPAGV 10 Unmodified _IGASVDPAGV_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 443.73028564453125 2 443.23745 884.460347 -0.22482 -9.9647E-05 0.23283 0.0001032 0.0080167 3.5533E-06 443.2374330362957 79.58 1.3614 75.904 75.233 76.594 -3.676 125 38 5 0 0 0 0.036874 1 15109 15109 21.75 5.4757 1 20114000 20602 3477 13478 13483 20486 20486 0.013495056264787308 IGASVDPAGV 10 Unmodified _IGASVDPAGV_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 443.23745 884.460347 0.39379 0.00017454 -0.26482 -0.00011738 0.12897 5.7166E-05 443.2371411713567 75.782 1.2064 75.782 75.31 76.516 0 -0.019532 -0.00024378 NaN 21.75 108 34 5 NaN NaN NaN NaN 0 NaN NaN 0 23148000 20603 3477 13478 13483 0.013495056264787308 IGASVDPAGV 10 Unmodified _IGASVDPAGV_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 443.23745 884.460347 -0.091262 -4.0451E-05 -0.036349 -1.6111E-05 -0.12761 -5.6562E-05 443.2373937516857 79.186 1.1974 75.676 75.242 76.44 -3.5102 -0.1258 -4.1254E-05 NaN 21.75 78 33 3 NaN NaN NaN NaN 0 NaN NaN 0 21797000 20604 3477 13478 13483 0.013495056264787308 IGASVDPAGV 10 Unmodified _IGASVDPAGV_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 443.23745 884.460347 -0.10491 -4.6499E-05 0.08488 3.7622E-05 -0.020029 -8.8775E-06 443.23741381787136 79.648 1.0893 75.844 75.372 76.461 -3.8048 0.042282 6.6212E-05 NaN 21.75 75 30 3 NaN NaN NaN NaN 0 NaN NaN 0 16801000 20605 3477 13478 13483 0.013495056264787308 IGCQLLSDL 9 Unmodified _IGCQLLSDL_ 0 0 0 REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1 REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25494384765625 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 116.19 1 111.7 111.2 112.2 -4.486 0 0 0 0.20628 1 22909 22909 21.747 0 1 + 20606 15075 13479 13484 20487 20487 0.013190054429401243 IGDKVYVHY 9 Unmodified _IGDKVYVHY_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.4580078125 3 365.194075 1092.5604 0.20067 7.3282E-05 1.1785 0.00043037 1.3791 0.00050365 365.19486594022476 78.955 1.5707 78.955 77.806 79.377 0 59 44 3 0 0 0 0.61771 1 15251 15251 0.12781 0 1 2418900 20607 1872 13480 13485 20488 20488 0.01781742960270094 IGDKVYVHY 9 Unmodified _IGDKVYVHY_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 365.194075 1092.5604 -0.25468 -9.3007E-05 1.0034 0.00036644 0.74873 0.00027343 365.1945700681568 82.474 0.73419 78.867 78.497 79.231 -3.6079 -0.049908 -0.00024133 NaN 0.12781 41 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2710500 20608 1872 13480 13485 0.01781742960270094 IGDKVYVHY 9 Unmodified _IGDKVYVHY_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 365.194075 1092.5604 0.088753 3.2412E-05 0.95167 0.00034754 1.0404 0.00037995 365.1945845296566 82.783 0.96283 78.909 78.297 79.26 -3.8736 -0.006989 -0.00029802 NaN 0.12781 37 27 2 NaN NaN NaN NaN 0 NaN NaN 0 2030800 20609 1872 13480 13485 0.01781742960270094 IGDKVYVHY 9 Unmodified _IGDKVYVHY_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 365.194075 1092.5604 -0.80225 -0.00029298 1.8639 0.00068068 1.0616 0.00038771 365.19507816879013 82.633 1.0056 78.934 78.515 79.521 -3.6985 0.017913 0.00070139 NaN 0.12781 48 28 3 NaN NaN NaN NaN 0 NaN NaN 0 2034400 20610 1872 13480 13485 0.01781742960270094 IGDSLVISI 9 Unmodified _IGDSLVISI_ 0 0 0 REV__HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|38|3|anti-sense REV__HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|38|3|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2391357421875 2 458.771126 915.527698 -0.20388 -9.3533E-05 0.18597 8.5318E-05 -0.017905 -8.2144E-06 458.7712118005332 80.72 0.90532 77.032 76.618 77.523 -3.6879 42 25 2 0 0 0 0.19271 1 15337 15337 30.637 0 1 16768000 + 20611 23629 13481 13486 20489 20489 0.06655535837421667 IGDSSTNII 9 Unmodified _IGDSSTNII_ 0 0 0 tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1 tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1 tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.241943359375 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 108.82 1 104.37 103.87 104.87 -4.4518 0 0 0 0.23508 1 20885 20885 11.64 1.5664 1 20612 25929 13482 13487 20490 20490 0.0033318441828669165 IGDSSTNII 9 Unmodified _IGDSSTNII_ 0 0 0 tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1 tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1 tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2392578125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 74.101 1 70.507 70.007 71.007 -3.594 0 0 0 0.23508 1 14067 14067 12.532 0.89125 1 20613 25929 13482 13487 20491 20491 0.0033318441828669165 IGERQQCLERY 11 Unmodified _IGERQQCLERY_ 0 0 0 REV__ENSG00000100982|ENST00000372409|PCIF1 REV__ENSG00000100982|ENST00000372409|PCIF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2518005371094 3 465.566354 1393.67723 0.14294 6.6546E-05 0.33477 0.00015586 0.47771 0.0002224 465.90092222871067 60.037 0.49596 56.814 56.638 57.134 -3.2237 15 13 2 0 0 0 0.96129 1 11221 11221 3.8459 0 1 607190 + 20614 14751 13483 13488 20492 20492 -0.0038588688225900114 IGFCFCPL 8 Carbamidomethyl (C) _IGFC(Carbamidomethyl (C))FCPL_ IGFC(0.983)FC(0.017)PL IGFC(18)FC(-18)PL 0 1 0 REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72412109375 2 478.722067 955.429581 0.026864 1.286E-05 3.1071 0.0014875 3.134 0.0015003 478.723424327584 130.51 0.49124 125.68 125.54 126.03 -4.8355 19 13 2 0 0 0 0.23703 1 25122 25122 41.817 17.607 2 919380 + 20615 16691 13484 13489 20493 20493 19 -0.04991687283779811 IGFCFCPL 8 Carbamidomethyl (C) _IGFC(Carbamidomethyl (C))FCPL_ IGFC(0.99)FC(0.01)PL IGFC(20)FC(-20)PL 0 1 0 REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7234191894531 2 478.722067 955.429581 NaN NaN NaN NaN NaN NaN NaN 130.49 1 125.71 125.21 126.21 -4.7725 0 0 0 0.055888 1 25112 25112 52.334 25.993 2 + 20616 16691 13484 13489 20494 20494 19 -0.04991687283779811 IGFIQLLAIG 10 Unmodified _IGFIQLLAIG_ 0 0 0 REV__nc|ENSG00000048140|Q96FV3-3|TSPAN17 REV__nc|ENSG00000048140|Q96FV3-3|TSPAN17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2736206054688 2 522.826235 1043.63792 0.19357 0.0001012 3.9586 0.0020696 4.1521 0.0021709 522.8286023027706 132.34 0.21292 132.34 132.23 132.44 0 6 5 2 0 0 0 1.1302 1 26147 26147 0.063865 0.032455 1 3030600 + 20617 14072 13485 13490 20495 20495 0.11784380896438051 IGFLERFYRF 10 Unmodified _IGFLERFYRF_ 0 0 0 REV__ENST00000587482.1_1_19:3649915-3700388:-|nuORF;REV__nc|ENSG00000107242|O14986-3|PIP5K1B REV__nc|ENSG00000107242|O14986-3|PIP5K1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.1143798828125 3 449.91179 1346.71354 NaN NaN NaN NaN NaN NaN NaN 31.478 1 29.452 28.952 29.952 -2.0264 0 0 0 0.22588 1 5435 5435 1.9064 0.57673 1 + 20618 15079;23274 13486 13491 20496 20496 0.054053580767231324 IGFLQGPMPS 10 Unmodified _IGFLQGPMPS_ 0 0 0 REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6971435546875 2 523.770603 1045.52665 NaN NaN NaN NaN NaN NaN NaN 43.875 1 43.875 43.375 44.375 0 0 0 0 0.22588 1 8220 8220 13.042 0.51092 1 + 20619 16404 13487 13492 20497 20497 0.005709981968720967 IGGDRLQFNQL 11 Unmodified _IGGDRLQFNQL_ 0 0 0 EFHC1|p.D408Rfs*4|1|0.32|ENSG00000096093|chr6:52469409-52469410|-/A|frameshift_variant;EFHC1|p.D408Tfs*7|6|0.29|ENSG00000096093|chr6:52469410-52469410|A/-|frameshift_variant;EFHC1|p.S488Vfs*8|1|0.09|ENSG00000096093|chr6:52479216-52479216|C/-|frameshift_variant;nc|ENSG00000096093|Q5JVL4-3|EFHC1;ENSG00000096093|ENST00000371068|EFHC1;nc|ENSG00000096093|Q5JVL4-2|EFHC1 EFHC1|p.D408Rfs*4|1|0.32|ENSG00000096093|chr6:52469409-52469410|-/A|frameshift_variant EFHC1|p.D408Rfs*4|1|0.32|ENSG00000096093|chr6:52469409-52469410|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7626953125 2 630.838394 1259.66223 NaN NaN NaN NaN NaN NaN NaN 80.537 1 76.698 76.198 77.198 -3.8392 0 0 0 0.23264 1 15287 15287 6.2058 0 1 20620 920 13488 13493 20498 20498 0.04278989312047088 IGGFCDTARF 10 Unmodified _IGGFCDTARF_ 0 0 0 REV__SEC24D|p.F704C|1|0.27|ENSG00000150961|chr4:118740790-118740790|A/C|missense_variant REV__SEC24D|p.F704C|1|0.27|ENSG00000150961|chr4:118740790-118740790|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7914428710938 2 543.755484 1085.49641 NaN NaN NaN NaN NaN NaN NaN 151.64 1 151.64 151.14 152.14 0 0 0 0 0.22588 1 30371 30371 7.2892 2.0586 1 + 20621 24601 13489 13494 20499 20499 -0.04291360468323546 IGGFVKHPINY 11 Unmodified _IGGFVKHPINY_ 0 0 0 REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1 REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7783203125 2 622.842948 1243.67134 NaN NaN NaN NaN NaN NaN NaN 157.73 1 152.44 151.94 152.94 -5.2854 0 0 0 0.22775 1 30612 30612 10.074 1.3285 1 + 20622 24919 13490 13495 20500 20500 0.059253826683971056 IGGGAKQP 8 Unmodified _IGGGAKQP_ 0 0 0 nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2;SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant nc|ENSG00000184178|Q8WU76-2|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 727.2169189453125 1 727.409714 726.402438 0.45693 0.00033238 3.5987 0.0026177 4.0556 0.0029501 727.4091075436602 172.71 0.10269 172.71 172.64 172.74 0 4 2 2 0 0 0 0.97994 1 35660 35660 5.7604 0.52976 1 4392400 20623 6892 13491 13496 20501 20501 0.028292884917163974 IGGMVWNP 8 Unmodified _IGGMVWNP_ 0 0 0 PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3 PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2173767089844 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 119.18 1 114.74 114.24 115.24 -4.4332 0 0 0 0.21181 1 22938 22938 15.768 1.1865 1 20624 1426 13492 13497 20502 20502 -0.019854982088986617 IGGQTKWKRE 10 Unmodified _IGGQTKWKRE_ 0 0 0 REV__CACYBP|p.V145Sfs*22|1|0.25|ENSG00000116161|chr1:175007191-175007191|A/-|frameshift_variant REV__CACYBP|p.V145Sfs*22|1|0.25|ENSG00000116161|chr1:175007191-175007191|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2847290039062 2 601.835654 1201.65676 0.54338 0.00032702 4.0952 0.0024647 4.6386 0.0027917 602.3397716335884 171.62 0.2442 166.7 166.62 166.87 -4.9149 8 6 2 0 0 0 0.82288 1 34010 34010 13.615 0 1 7574000 + 20625 13241 13493 13498 20503 20503 0.06399310520214385 IGGTNEALV 9 Unmodified _IGGTNEALV_ 0 0 0 tr|U7T011|U7T011_FUSNUCyclohexadienyldehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00848PE=3SV=1 tr|U7T011|U7T011_FUSNUCyclohexadienyldehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00848PE=3SV=1 tr|U7T011|U7T011_FUSNUCyclohexadienyldehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00848PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2285461425781 2 437.23745 872.460347 0.23679 0.00010353 -0.078478 -3.4314E-05 0.15831 6.922E-05 437.2371629117036 28.389 0.44962 26.633 26.461 26.911 -1.7552 22 12 2 0 0 0 0.46882 1 4783 4783 21.537 0 1 610560 20626 26307 13494 13499 20504 20504 0.019015056264606756 IGGTSPVRL 9 Unmodified _IGGTSPVRL_ 0 0 0 REV__nc|ENSG00000142163|Q8WZA6|OR1E3 REV__nc|ENSG00000142163|Q8WZA6|OR1E3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.13104248046875 2 450.269084 898.523616 0.43792 0.00019718 -0.038147 -1.7177E-05 0.39978 0.00018001 450.26899829241904 122.94 0.59476 118.21 117.98 118.57 -4.731 19 16 2 0 0 0 0.52414 1 23591 23591 18.135 1.1927 1 739610 + 20627 24077 13495 13500 20505 20505 0.07029491134380805 IGGTSPVRL 9 Unmodified _IGGTSPVRL_ 0 0 0 REV__nc|ENSG00000142163|Q8WZA6|OR1E3 REV__nc|ENSG00000142163|Q8WZA6|OR1E3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 450.269084 898.523616 0.095634 4.3061E-05 0.27539 0.000124 0.37102 0.00016706 450.26926484706587 122.64 0.35174 118.09 118.02 118.38 -4.5476 -0.10347 0.00024772 NaN 18.135 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 743610 + 20628 24077 13495 13500 0.07029491134380805 IGGTSPVRL 9 Unmodified _IGGTSPVRL_ 0 0 0 REV__nc|ENSG00000142163|Q8WZA6|OR1E3 REV__nc|ENSG00000142163|Q8WZA6|OR1E3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 450.269084 898.523616 0.43792 0.00019718 -0.038147 -1.7177E-05 0.39978 0.00018001 450.26899829241904 122.94 0.59476 118.21 117.98 118.57 -4.731 0.013274 -3.4625E-05 NaN 18.135 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 739610 + 20629 24077 13495 13500 0.07029491134380805 IGGTSPVRL 9 Unmodified _IGGTSPVRL_ 0 0 0 REV__nc|ENSG00000142163|Q8WZA6|OR1E3 REV__nc|ENSG00000142163|Q8WZA6|OR1E3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 450.269084 898.523616 0.2249 0.00010127 -0.028464 -1.2816E-05 0.19644 8.845E-05 450.2692268294319 122.88 0.53406 118.28 117.98 118.52 -4.5926 0.090193 -2.5904E-05 NaN 18.135 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 645020 + 20630 24077 13495 13500 0.07029491134380805 IGGWSWAP 8 Unmodified _IGGWSWAP_ 0 0 0 ENST00000478934.5_1_6:33238004-33239739:-|nuORF ENST00000478934.5_1_6:33238004-33239739:-|nuORF ENST00000478934.5_1_6:33238004-33239739:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21685791015625 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 115.32 1 115.32 114.82 115.82 0 0 0 0 0.21486 1 22694 22694 11.114 1.767 1 20631 10332 13496 13501 20506 20506 -0.023224249912459527 IGHYRFWY 8 Unmodified _IGHYRFWY_ 0 0 0 FCAR|p.R110W|1|0.19|ENSG00000186431|chr19:54885492-54885492|C/T|missense_variant FCAR|p.R110W|1|0.19|ENSG00000186431|chr19:54885492-54885492|C/T|missense_variant FCAR|p.R110W|1|0.19|ENSG00000186431|chr19:54885492-54885492|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21295166015625 3 381.190776 1140.5505 NaN NaN NaN NaN NaN NaN NaN 48.112 1 48.112 47.612 48.612 0 0 0 0 0.21486 1 9078 9078 1.8442 0.36234 1 20632 11810 13497 13502 20507 20507 -0.01415400254427368 IGIEMKFNN 9 Unmodified _IGIEMKFNN_ 0 0 0 XDH|p.K271N|1|0.26|ENSG00000158125|chr2:31383828-31383828|C/A|missense_variant XDH|p.K271N|1|0.26|ENSG00000158125|chr2:31383828-31383828|C/A|missense_variant XDH|p.K271N|1|0.26|ENSG00000158125|chr2:31383828-31383828|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.273681640625 2 533.273509 1064.53247 NaN NaN NaN NaN NaN NaN NaN 66.151 1 62.868 62.368 63.368 -3.2832 0 0 0 0.23508 1 12447 12447 11.64 0 1 20633 26584 13498 13503 20508 20508 0.0027809670855276636 IGIILLKRGQP 11 Unmodified _IGIILLKRGQP_ 0 0 0 REV__NSF|p.T645I|1|0.23|ENSG00000073969|chr17:46749798-46749798|C/T|missense_variant REV__NSF|p.T645I|1|0.23|ENSG00000073969|chr17:46749798-46749798|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 604.3978271484375 2 604.39789 1206.78123 NaN NaN NaN NaN NaN NaN NaN 174.94 1 170.05 169.55 170.55 -4.8916 0 0 0 0.23324 1 34849 34849 5.7319 1.4026 1 + 20634 24385 13499 13504 20509 20509 0.18610808007565538 IGIWEYYYK 9 Unmodified _IGIWEYYYK_ 0 0 0 tr|U7SQY2|U7SQY2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01627PE=4SV=1 tr|U7SQY2|U7SQY2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01627PE=4SV=1 tr|U7SQY2|U7SQY2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01627PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 309.90020751953125 4 309.409029 1233.60701 -0.6998 -0.00021652 -1.1815 -0.00036555 -1.8813 -0.00058208 309.4086136609172 70.082 0.42347 70.082 69.886 70.309 0 14 11 2 0 0 0 0.8799 1 13546 13546 2.4985 2.4985 1 1019000 20635 26070 13500 13505 20510 20510 -0.0004481720843614312 IGKKKKKKKK 10 Unmodified _IGKKKKKKKK_ 0 0 0 ENST00000433510.2_1_17:46713761-46713989:-|nuORF ENST00000433510.2_1_17:46713761-46713989:-|nuORF ENST00000433510.2_1_17:46713761-46713989:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3008117675781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 12.289 1 11.28 10.78 11.78 -1.0098 0 0 0 0.22588 1 1694 1694 0.15932 0.15932 1 20636 9813 13501 13506 20511 20511 0.2778736654954628 IGKLIVILLI 10 Unmodified _IGKLIVILLI_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7894287109375 2 547.899203 1093.78385 NaN NaN NaN NaN NaN NaN NaN 73.809 1 70.133 69.633 70.633 -3.6764 0 0 0 0.22588 1 13953 13953 0.45834 0.057624 1 + 20637 17662 13502 13507 20512 20512 0.24071263412520238 IGKLIVILLI 10 Unmodified _IGKLIVILLI_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7799072265625 2 547.899203 1093.78385 0.16849 9.2317E-05 -1.9316 -0.0010583 -1.7631 -0.00096601 547.8977174952391 152.37 0.10587 147.14 147.07 147.18 -5.2365 4 2 2 0 0 0 1.1344 1 29542 29542 0 0 1 649830 + 20638 17662 13502 13507 20513 20513 0.24071263412520238 IGKLIVILLIV 11 Unmodified _IGKLIVILLIV_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 597.574462890625 2 597.43341 1192.85227 NaN NaN NaN NaN NaN NaN NaN 174.83 1 174.83 174.33 175.33 0 0 0 0 0.23698 1 36204 36204 1.3295 0.9789 1 + 20639 17662 13503 13508 20514 20514 0.26355507992366256 IGKLSLTKKV 10 Unmodified _IGKLSLTKKV_ 0 0 0 REV__ENST00000518780.1_1_8:1704216-1707628:+|nuORF REV__ENST00000518780.1_1_8:1704216-1707628:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7836303710938 2 543.865892 1085.71723 NaN NaN NaN NaN NaN NaN NaN 86.119 1 82.39 81.89 82.89 -3.7289 0 0 0 0.22588 1 16464 16464 1.6526 0 1 + 20640 22609 13504 13509 20515 20515 0.1778002785058561 IGKTSPIQL 9 Unmodified _IGKTSPIQL_ 0 0 0 REV__ENSG00000136834|ENST00000259357|OR1J1 REV__ENSG00000136834|ENST00000259357|OR1J1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7228088378906 2 478.792392 955.570232 0.043171 2.067E-05 0.15127 7.2429E-05 0.19444 9.3098E-05 478.7924052756132 98.691 0.48343 94.558 94.228 94.712 -4.1326 22 13 2 0 0 0 0.52242 1 19331 19331 29.082 9.8246 1 1013100 + 20641 16353 13505 13510 20516 20516 0.09066930965661868 IGKTSPIQL 9 Unmodified _IGKTSPIQL_ 0 0 0 REV__ENSG00000136834|ENST00000259357|OR1J1 REV__ENSG00000136834|ENST00000259357|OR1J1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.792392 955.570232 0.21064 0.00010085 -0.099149 -4.7472E-05 0.11149 5.3381E-05 478.7922572651687 98.903 0.42302 94.634 94.403 94.826 -4.2692 0.037954 -0.00012651 NaN 29.082 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1159400 + 20642 16353 13505 13510 0.09066930965661868 IGLFLIIK 8 Unmodified _IGLFLIIK_ 0 0 0 REV__tr|U7SSM2|U7SSM2_FUSNUDUF1007domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01500PE=4SV=1 REV__tr|U7SSM2|U7SSM2_FUSNUDUF1007domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01500PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2388000488281 2 458.815139 915.615725 0.32536 0.00014928 0.2518 0.00011553 0.57716 0.00026481 458.8152082146463 68.306 0.34164 64.915 64.705 65.046 -3.3903 13 9 2 0 0 0 1.0268 1 12864 12864 2.8892 0 1 621160 + 20643 25060 13506 13511 20517 20517 0.1545420121872212 IGLFVLNRY 9 Unmodified _IGLFVLNRY_ 0 0 0 REV__ENSG00000105750|ENST00000328178|ZNF85;REV__ENSG00000146757|ENST00000328747|ZNF92;REV__ENSG00000196109|ENST00000397121|ZNF676;REV__ENSG00000196172|ENST00000402377|ZNF681;REV__ENSG00000196247|ENST00000620827|ZNF107;REV__ENSG00000197372|ENST00000359788|ZNF675 REV__ENSG00000197372|ENST00000359788|ZNF675 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7880859375 2 547.821484 1093.62842 NaN NaN NaN NaN NaN NaN NaN 112.03 1 112.03 111.53 112.53 0 0 0 0 0.18525 1 22041 22041 7.4771 0 1 + 20644 16898;19330;15016;19215;19224;19231 13507 13512 20518 20518 0.08534612610947079 IGLFVYSTQ 9 Unmodified _IGLFVYSTQ_ 0 0 0 REV__ENSG00000146242|ENST00000369750|TPBG REV__ENSG00000146242|ENST00000369750|TPBG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.1716003417969 3 343.186809 1026.5386 NaN NaN NaN NaN NaN NaN NaN 74.218 1 74.218 73.718 74.718 0 0 0 0 0.18691 1 14406 14406 4.477 1.8458 1 + 20645 16879 13508 13513 20519 20519 0.026389382117031346 IGLHGRRF 8 Unmodified _IGLHGRRF_ 0 0 0 REV__ENST00000282488.11_1_3:151986727-151986862:+|nuORF REV__ENST00000282488.11_1_3:151986727-151986862:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7278747558594 2 478.28286 954.551168 NaN NaN NaN NaN NaN NaN NaN 117.83 1 113.22 112.72 113.72 -4.6106 0 0 0 0.23749 1 22612 22612 0.12286 0 1 + 20646 20314 13509 13514 20520 20520 0.07207439185276598 IGLLVPLVKSL 11 Unmodified _IGLLVPLVKSL_ 0 0 0 REV__ENSG00000102287|ENST00000370328|GABRE REV__ENSG00000102287|ENST00000370328|GABRE MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3248291015625 2 576.391742 1150.76893 0.3951 0.00022773 3.8883 0.0022412 4.2834 0.0024689 576.3937978513993 126.12 0.10617 121.34 121.26 121.37 -4.7864 4 2 2 0 0 0 0.88941 1 24214 24214 0.58532 0.58475 1 555150 + 20647 14832 13510 13515 20521 20521 0.19957771544500247 IGLPEDSKA 9 Unmodified _IGLPEDSKA_ 0 0 0 nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK nc|ENSG00000234616|O75564|JRK nc|ENSG00000234616|O75564|JRK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25079345703125 2 465.250557 928.486562 0.24219 0.00011268 -0.32314 -0.00015034 -0.080953 -3.7664E-05 465.2502292605724 108.92 0.70526 108.92 108.52 109.23 0 40 19 3 0 0 0 0.66537 1 21341 21341 8.5933 0 1 2557700 20648 7819 13511 13516 20522 20522 0.01945774797957256 IGLPTEILT 9 Unmodified _IGLPTEILT_ 0 0 0 REV__ENSG00000125962|ENST00000473968|ARMCX5 REV__ENSG00000125962|ENST00000473968|ARMCX5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72113037109375 2 478.786776 955.558998 NaN NaN NaN NaN NaN NaN NaN 101.61 1 97.291 96.791 97.791 -4.3208 0 0 0 0.22251 1 19446 19446 16.942 1.0951 1 + 20649 15845 13512 13517 20523 20523 0.0794410887151571 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2471618652344 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 36.403 1 36.403 35.903 36.903 0 0 0 0 0.22632 1 6710 6710 0.094841 0.094841 1 + 20650 18334 13513 13518 20524 20524 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2514953613281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 63.774 1 63.774 63.274 64.274 0 0 0 0 0.22632 1 12269 12269 0 0 1 + 20651 18334 13513 13518 20525 20525 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2412109375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 112.5 1 112.5 112 113 0 0 0 0 0.22632 1 22132 22132 0.094841 0.094841 1 + 20652 18334 13513 13518 20526 20526 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24395751953125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 122.63 1 122.63 122.13 123.13 0 0 0 0 0.22632 1 24170 24170 0.094841 0 1 + 20653 18334 13513 13518 20527 20527 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24365234375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 132.44 1 132.44 131.94 132.94 0 0 0 0 0.22632 1 26184 26184 0.50596 0.50596 1 + 20654 18334 13513 13518 20528 20528 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24920654296875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 52.9 1 50.016 49.516 50.516 -2.8837 0 0 0 0.22632 1 10073 10073 0 0 1 + 20655 18334 13513 13518 20529 20529 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25177001953125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 62.345 1 59.383 58.883 59.883 -2.9614 0 0 0 0.22632 1 12029 12029 0 0 1 + 20656 18334 13513 13518 20530 20530 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2500305175781 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 127.49 1 122.87 122.37 123.37 -4.6172 0 0 0 0.22632 1 25141 25141 0.094841 0.094841 1 + 20657 18334 13513 13518 20531 20531 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2440490722656 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 130.44 1 125.8 125.3 126.3 -4.6359 0 0 0 0.22632 1 25705 25705 0.50596 0.49215 1 + 20658 18334 13513 13518 20532 20532 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2411804199219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 134.23 1 129.59 129.09 130.09 -4.6399 0 0 0 0.22632 1 26468 26468 0.50596 0.50596 1 + 20659 18334 13513 13518 20533 20533 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2457580566406 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 38.635 1 36.193 35.693 36.693 -2.4419 0 0 0 0.22632 1 6881 6881 0 0 1 + 20660 18334 13513 13518 20534 20534 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2503356933594 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 61.493 1 58.123 57.623 58.623 -3.3694 0 0 0 0.22632 1 11463 11463 0 0 1 + 20661 18334 13513 13518 20535 20535 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24908447265625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 61.723 1 58.353 57.853 58.853 -3.3694 0 0 0 0.22632 1 11511 11511 0 0 1 + 20662 18334 13513 13518 20536 20536 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2560729980469 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 69.014 1 65.478 64.978 65.978 -3.5362 0 0 0 0.23698 1 12987 12987 1.4551 0.94916 1 + 20663 18334 13513 13518 20537 20537 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2513732910156 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 152.12 1 146.89 146.39 147.39 -5.2365 0 0 0 0.22632 1 29493 29493 0.094841 0.094841 1 + 20664 18334 13513 13518 20538 20538 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2503967285156 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 162.25 1 157.11 156.61 157.61 -5.1438 0 0 0 0.22632 1 31515 31515 0.094841 0.094841 1 + 20665 18334 13513 13518 20539 20539 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2499694824219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 45.387 1 42.52 42.02 43.02 -2.8666 0 0 0 0.22632 1 8236 8236 0 0 1 + 20666 18334 13513 13518 20540 20540 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25469970703125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 83.501 1 79.803 79.303 80.303 -3.6985 0 0 0 0.23698 1 15940 15940 1.3296 0 1 + 20667 18334 13513 13518 20541 20541 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2518310546875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 112.88 1 108.6 108.1 109.1 -4.2725 0 0 0 0.22632 1 21735 21735 0.094841 0 1 + 20668 18334 13513 13518 20542 20542 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.251953125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 120.68 1 116.21 115.71 116.71 -4.467 0 0 0 0.22632 1 23235 23235 0.094841 0.068635 1 + 20669 18334 13513 13518 20543 20543 0.21390489652844735 IGLVKILPRKH 11 Unmodified _IGLVKILPRKH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24383544921875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 127.27 1 122.57 122.07 123.07 -4.6998 0 0 0 0.22632 1 24483 24483 0.094841 0 1 + 20670 18334 13513 13518 20544 20544 0.21390489652844735 IGMYGLLY 8 Unmodified _IGMYGLLY_ 0 0 0 ENST00000394239.7_1_17:57937735-57951917:-|nuORF ENST00000394239.7_1_17:57937735-57951917:-|nuORF ENST00000394239.7_1_17:57937735-57951917:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24432373046875 2 465.243689 928.472826 NaN NaN NaN NaN NaN NaN NaN 145.67 1 145.67 145.17 146.17 0 0 0 0 0.23294 1 29118 29118 0.68139 0.42991 1 20671 9409 13514 13519 20545 20545 0.005728257651639979 IGNEIHSE 8 Unmodified _IGNEIHSE_ 0 0 0 REV__tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1 REV__tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.1153869628906 2 449.716882 897.41921 -0.084929 -3.8194E-05 0.87342 0.00039279 0.78849 0.0003546 449.71699794730984 95.584 0.44527 91.703 91.477 91.922 -3.881 17 12 2 0 0 0 0.93477 1 18373 18373 18.135 9.5417 1 1430800 + 20672 25238 13515 13520 20546 20546 -0.033602554129970486 IGNEIHSE 8 Unmodified _IGNEIHSE_ 0 0 0 REV__tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1 REV__tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 449.716882 897.41921 0.045517 2.047E-05 1.1567 0.00052021 1.2023 0.00054068 449.7171062718523 91.479 0.40958 91.479 91.217 91.627 0 -0.12811 0.0003074 NaN 18.135 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1093200 + 20673 25238 13515 13520 -0.033602554129970486 IGNEIHSE 8 Unmodified _IGNEIHSE_ 0 0 0 REV__tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1 REV__tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.716882 897.41921 0.078042 3.5097E-05 0.39916 0.00017951 0.4772 0.00021461 449.71696663781086 95.83 0.41308 91.639 91.509 91.922 -4.1911 0.031994 -0.000374 NaN 18.135 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1130500 + 20674 25238 13515 13520 -0.033602554129970486 IGPGCCHV 8 Unmodified _IGPGCCHV_ 0 0 0 DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1;DIDO1|p.F711Lfs*22|1|0.35|ENSG00000101191|chr20:62896314-62896314|A/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3829345703125 1 785.343291 784.336015 0.46767 0.00036728 1.609 0.0012637 2.0767 0.0016309 785.3433411075903 128.29 0.13673 128.29 128.18 128.31 0 5 3 2 0 0 0 0.83271 1 25332 25332 2.8892 0 1 1987300 20675 837 13516 13521 20547 20547 -0.06477986666197921 IGQDTAIVTF 10 Unmodified _IGQDTAIVTF_ 0 0 0 REV__ENSG00000196159|ENST00000394329|FAT4;REV__FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant REV__ENSG00000196159|ENST00000394329|FAT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2872924804688 2 532.784764 1063.55498 0.091169 4.8573E-05 0.87958 0.00046862 0.97074 0.0005172 532.7853921323103 100.42 0.4487 96.26 96.046 96.495 -4.1594 20 12 2 0 0 0 0.51199 1 19715 19715 24.021 5.8742 1 1993900 + 20676 19222;23527 13517 13522 20548 20548 0.025740193777892273 IGQEIAEAV 9 Unmodified _IGQEIAEAV_ 0 0 0 nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;ENST00000462119.5_1_6:111628768-111636625:-|nuORF nc|ENSG00000009413|O60673-2|REV3L nc|ENSG00000009413|O60673-2|REV3L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2505798339844 2 465.250557 928.486562 -0.21266 -9.8942E-05 -0.0051755 -2.4079E-06 -0.21784 -0.00010135 465.2504337111759 113.28 0.75372 108.82 108.4 109.15 -4.4539 47 20 3 0 0 0 0.19171 1 22354 22354 38.176 3.7738 1 3956200 20677 1051 13518 13523 20549 20549 0.01945774797957256 IGQIIKVGT 9 Unmodified _IGQIIKVGT_ 0 0 0 REV__tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1 REV__tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2502136230469 2 464.794935 927.575317 0.18811 8.743E-05 0.020483 9.5203E-06 0.20859 9.6951E-05 464.7947700783392 85.023 0.37984 85.023 84.803 85.183 0 13 10 2 0 0 0 0.76271 1 16578 16578 10.074 1.9184 1 709610 + 20678 24990 13519 13524 20550 20550 0.1086323482828675 IGRIMTCY 8 Unmodified _IGRIMTCY_ 0 0 0 REV__PTCD3|p.M266I|1|0.11|ENSG00000132300|chr2:86125076-86125076|G/A|missense_variant REV__PTCD3|p.M266I|1|0.11|ENSG00000132300|chr2:86125076-86125076|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73785400390625 2 478.738248 955.461943 NaN NaN NaN NaN NaN NaN NaN 89.522 1 89.522 89.022 90.022 0 0 0 0 0.21181 1 17483 17483 15.768 0 1 + 20679 24522 13520 13525 20551 20551 -0.017568998807860225 IGRKFGDPV 9 Unmodified _IGRKFGDPV_ 0 0 0 nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B nc|ENSG00000204389|P0DMV8-2|HSPA1A nc|ENSG00000204389|P0DMV8-2|HSPA1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.1910705566406 3 330.190665 987.550165 NaN NaN NaN NaN NaN NaN NaN 121.87 1 121.87 121.37 122.37 0 0 0 0 0.23508 1 24024 24024 1.0715 0 1 20680 7575 13521 13526 20552 20552 0.05589180025708629 IGRQHLRFR 9 Unmodified _IGRQHLRFR_ 0 0 0 REV__ENST00000548674.5_1_12:57881816-57882819:+|nuORF REV__ENST00000548674.5_1_12:57881816-57882819:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 591.9349975585938 2 591.851973 1181.68939 0.35922 0.0002126 1.2603 0.00074592 1.6195 0.00095853 591.8538593485263 153.5 0.17455 153.5 153.37 153.55 0 5 4 2 0 0 0 0.87511 1 30753 30753 7.2892 5.8073 1 839790 + 20681 22912 13522 13527 20553 20553 0.10581562433731051 IGRYIKDD 8 Unmodified _IGRYIKDD_ 0 0 0 REV__ENSG00000125352|ENST00000371442|RNF113A REV__ENSG00000125352|ENST00000371442|RNF113A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26361083984375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 170.42 1 170.42 169.92 170.92 0 0 0 0 0.21452 1 35041 35041 13.508 0.97634 1 + 20682 15808 13523 13528 20554 20554 0.023328834091216777 IGSGCLDP 8 Unmodified _IGSGCLDP_ 0 0 0 REV__FBN2|p.D2138Tfs*111|3|0.3|ENSG00000138829|chr5:128290765-128290765|C/-|frameshift_variant REV__FBN2|p.D2138Tfs*111|3|0.3|ENSG00000138829|chr5:128290765-128290765|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21142578125 2 381.178546 760.34254 -0.083065 -3.1662E-05 -0.24364 -9.2869E-05 -0.3267 -0.00012453 381.1784137062706 28.012 0.58635 28.012 27.801 28.387 0 25 16 2 0 0 0 0.82854 1 4979 4979 0.62683 0 1 746960 + 20683 16497 13524 13529 20555 20555 -0.04721770233845746 IGSLENISF 9 Unmodified _IGSLENISF_ 0 0 0 REV__ENSG00000083857|ENST00000441802|FAT1;REV__FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant REV__ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25848388671875 2 490.258382 978.502212 -1.05 -0.00051475 0.43954 0.00021549 -0.61042 -0.00029926 490.25895561305947 20.783 0.7667 19.062 18.695 19.462 -1.7211 63 21 4 0 0 0 0.54354 1 3297 3297 16.942 0 1 27421000 + 20684 14460;23525 13525 13530 20556 20556 0.012100613149982564 IGSLSTLQS 9 Unmodified _IGSLSTLQS_ 0 0 0 REV__ENST00000521719.5_1_8:124526414-124553254:-|nuORF REV__ENST00000521719.5_1_8:124526414-124553254:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7521667480469 2 453.250557 904.486562 0.06416 2.908E-05 -0.31688 -0.00014363 -0.25272 -0.00011455 453.25038713576816 59.084 0.62993 55.879 55.538 56.168 -3.2052 41 17 3 0 0 0 0.091132 1 11060 11060 4.7159 0.43226 1 4450800 + 20685 17270 13526 13531 20557 20557 0.030497747979552514 IGSTIPSY 8 Unmodified _IGSTIPSY_ 0 0 0 nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4735717773438 1 837.435261 836.427984 0.52436 0.00043912 -0.095631 -8.0085E-05 0.42873 0.00035903 837.4351128193778 153.21 0.88635 148.44 148.05 148.94 -4.7684 53 24 3 0 0 0 0.3584 1 30469 30469 34.187 6.0141 1 24538000 20686 1842 13527 13532 20558 20558 0.003227182234695647 IGSTIPSY 8 Unmodified _IGSTIPSY_ 0 0 0 nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.471923828125 1 837.435261 836.427984 0.38445 0.00032195 0.059095 4.9488E-05 0.44354 0.00037144 837.4352301520403 153.76 0.93839 148.5 148.06 148.99 -5.2669 57 26 3 0 0 0 0.53444 1 29772 29772 26.341 0 1 18798000 20687 1842 13527 13532 20559 20559 0.003227182234695647 IGSTIPSY 8 Unmodified _IGSTIPSY_ 0 0 0 nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4702758789062 1 837.435261 836.427984 0.55362 0.00046362 -0.19389 -0.00016237 0.35973 0.00030125 837.4349373777342 153.72 0.90225 148.5 148.04 148.94 -5.2209 58 25 3 0 0 0 0.53444 1 29740 29740 26.341 0 1 18913000 20688 1842 13527 13532 20560 20560 0.003227182234695647 IGSTIPSY 8 Unmodified _IGSTIPSY_ 0 0 0 nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 837.435261 836.427984 0.49583 0.00041523 -0.22548 -0.00018883 0.27035 0.0002264 837.4349960126015 148.43 0.86917 148.43 148.02 148.89 0 -0.032453 -0.00010381 NaN 34.187 58 24 3 NaN NaN NaN NaN 0 NaN NaN 0 27896000 20689 1842 13527 13532 0.003227182234695647 IGTEALAKA 9 Unmodified _IGTEALAKA_ 0 0 0 REV__ENST00000531389.2_1_12:122991779-122992905:-|nuORF REV__ENST00000531389.2_1_12:122991779-122992905:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2146911621094 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 116.12 1 111.77 111.27 112.27 -4.3585 0 0 0 0.16428 1 22357 22357 28.487 3.813 1 + 20690 15226 13528 13533 20561 20561 0.05538382523184282 IGTLEIEDGP 10 Unmodified _IGTLEIEDGP_ 0 0 0 REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2684936523438 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 108.42 1 104.1 103.6 104.6 -4.32 0 0 0 0.22544 1 21363 21363 19.257 0 1 + 20691 14298 13529 13534 20562 20562 -0.001302772387589357 IGTLEIEDGP 10 Unmodified _IGTLEIEDGP_ 0 0 0 REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2684936523438 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 108.57 1 104.12 103.62 104.62 -4.4518 0 0 0 0.22544 1 20839 20839 19.257 0 1 + 20692 14298 13529 13534 20563 20563 -0.001302772387589357 IGTSSYYI 8 Unmodified _IGTSSYYI_ 0 0 0 REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1 REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 452.2510986328125 2 452.226551 902.438549 -0.17135 -7.7489E-05 -0.09857 -4.4576E-05 -0.26992 -0.00012206 452.2278935686377 82.663 1.2754 78.965 78.212 79.487 -3.6985 44 36 2 0 0 0 0.88214 1 15644 15644 0.25148 0.25148 1 974430 + 20693 25248 13530 13535 20564 20564 -0.01657299122086897 IGTSSYYI 8 Unmodified _IGTSSYYI_ 0 0 0 REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1 REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 452.226551 902.438549 0.65871 0.00029789 -0.95593 -0.0004323 -0.29722 -0.00013441 452.2276117446898 78.743 0.66101 78.743 78.47 79.132 0 -0.070251 -0.00050325 NaN 0.25148 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 879660 + 20694 25248 13530 13535 -0.01657299122086897 IGTSSYYI 8 Unmodified _IGTSSYYI_ 0 0 0 REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1 REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 452.226551 902.438549 0.037876 1.7128E-05 -0.37278 -0.00016858 -0.33491 -0.00015145 452.2280671747552 82.605 0.78962 78.731 78.433 79.223 -3.8736 -0.081499 2.4177E-05 NaN 0.25148 28 22 2 NaN NaN NaN NaN 0 NaN NaN 0 502490 + 20695 25248 13530 13535 -0.01657299122086897 IGVCRVGPD 9 Unmodified _IGVCRVGPD_ 0 0 0 ENST00000595117.1_1_19:51125949-51129280:-|nuORF;ENSG00000213023|ENST00000600079|SYT3 ENST00000595117.1_1_19:51125949-51129280:-|nuORF ENST00000595117.1_1_19:51125949-51129280:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2379150390625 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 75.553 1 75.553 75.053 76.053 0 0 0 0 0.20155 1 14676 14676 23.148 7.3012 1 20696 7683 13531 13536 20565 20565 0.003732718485366604 IGVCRVGPD 9 Unmodified _IGVCRVGPD_ 0 0 0 ENST00000595117.1_1_19:51125949-51129280:-|nuORF;ENSG00000213023|ENST00000600079|SYT3 ENST00000595117.1_1_19:51125949-51129280:-|nuORF ENST00000595117.1_1_19:51125949-51129280:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2381591796875 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 91.326 1 87.401 86.901 87.901 -3.9251 0 0 0 0.23508 1 17877 17877 11.64 5.2862 1 20697 7683 13531 13536 20566 20566 0.003732718485366604 IGVCRVGPD 9 Unmodified _IGVCRVGPD_ 0 0 0 ENST00000595117.1_1_19:51125949-51129280:-|nuORF;ENSG00000213023|ENST00000600079|SYT3 ENST00000595117.1_1_19:51125949-51129280:-|nuORF ENST00000595117.1_1_19:51125949-51129280:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23870849609375 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 91.219 1 87.411 86.911 87.911 -3.8083 0 0 0 0.23508 1 17462 17462 12.532 0.89125 1 20698 7683 13531 13536 20567 20567 0.003732718485366604 IGVTRSVAA 9 Unmodified _IGVTRSVAA_ 0 0 0 REV__TMEM207|p.P109R|1|0.17|ENSG00000198398|chr3:190429710-190429710|G/C|missense_variant REV__TMEM207|p.P109R|1|0.17|ENSG00000198398|chr3:190429710-190429710|G/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2177429199219 2 437.261259 872.507966 -0.34178 -0.00014945 0.31107 0.00013602 -0.030714 -1.343E-05 437.261340818583 25.117 0.38288 23.264 23.116 23.499 -1.8534 16 10 2 0 0 0 0.23744 1 4134 4134 43.858 0 1 953060 + 20699 24818 13532 13537 20568 20568 0.06661204617319072 IGVVVYASEKS 11 Unmodified _IGVVVYASEKS_ 0 0 0 REV__ENSG00000100312|ENST00000216139|ACR REV__ENSG00000100312|ENST00000216139|ACR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3204956054688 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 161.4 1 161.4 160.9 161.9 0 0 0 0 0.22632 1 32419 32419 0.03141 0.0052036 1 + 20700 14689 13533 13538 20569 20569 0.05410263957674033 IGWLYGKIE 9 Unmodified _IGWLYGKIE_ 0 0 0 tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016906738281 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 110.03 1 110.03 109.53 110.53 0 0 0 0 0.23508 1 21638 21638 2.9952 1.3426 1 20701 26507 13534 13539 20570 20570 0.050192174827316194 IGWPHQKGR 9 Unmodified _IGWPHQKGR_ 0 0 0 REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 76.323 1 76.323 75.823 76.823 0 0 0 0 0.23508 1 14831 14831 2.7352 0.23671 1 + 20702 21503 13535 13540 20571 20571 0.047508068684237514 IGWPHQKGR 9 Unmodified _IGWPHQKGR_ 0 0 0 REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2012939453125 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 87.677 1 87.677 87.177 88.177 0 0 0 0 0.23508 1 17113 17113 2.7352 0 1 + 20703 21503 13535 13540 20572 20572 0.047508068684237514 IGWPHQKGR 9 Unmodified _IGWPHQKGR_ 0 0 0 REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2167053222656 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 87.786 1 87.786 87.286 88.286 0 0 0 0 0.23508 1 17132 17132 2.7352 0 1 + 20704 21503 13535 13540 20573 20573 0.047508068684237514 IGWPHQKGR 9 Unmodified _IGWPHQKGR_ 0 0 0 REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2007751464844 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 72.591 1 69.281 68.781 69.781 -3.3107 0 0 0 0.23508 1 14147 14147 2.7352 0 1 + 20705 21503 13535 13540 20574 20574 0.047508068684237514 IGWPHQKGR 9 Unmodified _IGWPHQKGR_ 0 0 0 REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015686035156 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 79.198 1 75.688 75.188 76.188 -3.5102 0 0 0 0.23508 1 15468 15468 2.7352 0 1 + 20706 21503 13535 13540 20575 20575 0.047508068684237514 IGWPHQKGR 9 Unmodified _IGWPHQKGR_ 0 0 0 REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2020263671875 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 69.15 1 65.614 65.114 66.114 -3.5362 0 0 0 0.23508 1 13017 13017 7.609 1.8255 1 + 20707 21503 13535 13540 20576 20576 0.047508068684237514 IGWPHQKGR 9 Unmodified _IGWPHQKGR_ 0 0 0 REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 103.47 1 99.125 98.625 99.625 -4.346 0 0 0 0.23508 1 19818 19818 2.7352 0 1 + 20708 21503 13535 13540 20577 20577 0.047508068684237514 IGYLTCCAL 9 Unmodified _IGYLTCCAL_ 0 0 0 REV__ENSG00000178307|ENST00000317635|TMEM11 REV__ENSG00000178307|ENST00000317635|TMEM11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73114013671875 2 478.732632 955.45071 NaN NaN NaN NaN NaN NaN NaN 137.62 1 137.62 137.12 138.12 0 0 0 0 0.21848 1 27300 27300 18.135 3.5533 1 + 20709 18600 13536 13541 20578 20578 -0.028797219749321812 IGYRELGTA 9 Unmodified _IGYRELGTA_ 0 0 0 REV__tr|U7SIQ9|U7SIQ9_FUSNUYARHGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02142PE=4SV=1 REV__tr|U7SIQ9|U7SIQ9_FUSNUYARHGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02142PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2574462890625 2 490.263999 978.513445 -0.088082 -4.3183E-05 0.55726 0.00027321 0.46918 0.00023002 490.2642857689884 87.659 0.49738 83.909 83.692 84.189 -3.7501 16 13 2 0 0 0 0.30056 1 16739 16739 4.7159 3.5011 1 859470 + 20710 24892 13537 13542 20579 20579 0.02332883409144415 IGYRHWQKGK 10 Unmodified _IGYRHWQKGK_ 0 0 0 ENST00000469390.5_1_1:156877911-156884587:+|nuORF;PEAR1|p.R956Gfs*30|1|0.3|ENSG00000187800|chr1:156913998-156913998|C/-|frameshift_variant;PEAR1|p.G1005Rfs*4|1|0.39|ENSG00000187800|chr1:156914690-156914691|-/C|frameshift_variant;ENSG00000187800|ENST00000292357|PEAR1 ENST00000469390.5_1_1:156877911-156884587:+|nuORF ENST00000469390.5_1_1:156877911-156884587:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2386474609375 3 424.903518 1271.68872 0.4198 0.00017838 0.67148 0.00028531 1.0913 0.00046369 424.90373061567055 77.486 0.96458 77.486 77.015 77.979 0 60 27 3 0 0 0 0.74847 1 15159 15159 6.1918 0.78914 1 2432100 20711 7130 13538 13543 20580 20580 0.06374722994019066 IHAGATRC 8 Unmodified _IHAGATRC_ 0 0 0 REV__MCPH1|p.P771Qfs*8|1|0.21|ENSG00000147316|chr8:6621546-6621546|C/-|frameshift_variant REV__MCPH1|p.P771Qfs*8|1|0.21|ENSG00000147316|chr8:6621546-6621546|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2537841796875 2 414.710879 827.407206 0.027797 1.1528E-05 -1.11 -0.00046032 -1.0822 -0.00044879 414.7089763703016 53.104 0.17935 50.016 49.932 50.111 -3.0876 5 4 2 0 0 0 1.0244 1 9758 9758 2.8892 0 1 192430 + 20712 16931 13539 13544 20581 20581 -0.013401506371792493 IHAGDPKEVL 10 Unmodified _IHAGDPKEVL_ 0 0 0 ENST00000378867.7_1_11:36397583-36422672:+|nuORF;ENST00000530252.1_1_11:36398008-36422672:+|nuORF ENST00000378867.7_1_11:36397583-36422672:+|nuORF ENST00000378867.7_1_11:36397583-36422672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 122.01 1 117.46 116.96 117.96 -4.5476 0 0 0 0.22588 1 24048 24048 9.544 0.79857 1 20713 9284 13540 13545 20582 20582 0.0461712798901317 IHALKSHLY 9 Unmodified _IHALKSHLY_ 0 0 0 REV__ENSG00000105656|ENST00000262809|ELL REV__ENSG00000105656|ENST00000262809|ELL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2752685546875 2 541.311284 1080.60801 NaN NaN NaN NaN NaN NaN NaN 154.77 1 149.99 149.49 150.49 -4.7791 0 0 0 0.22251 1 30764 30764 16.942 3.0362 1 + 20714 15008 13541 13546 20583 20583 0.07093441951133173 IHALKSHLY 9 Unmodified _IHALKSHLY_ 0 0 0 REV__ENSG00000105656|ENST00000262809|ELL REV__ENSG00000105656|ENST00000262809|ELL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2759399414062 2 541.311284 1080.60801 NaN NaN NaN NaN NaN NaN NaN 160.65 1 155.4 154.9 155.9 -5.2526 0 0 0 0.22251 1 31176 31176 16.942 1.1741 1 + 20715 15008 13541 13546 20584 20584 0.07093441951133173 IHDQLTVELFY 11 Unmodified _IHDQLTVELFY_ 0 0 0 REV__ENST00000377503.6_1_5:159681329-159707642:-|nuORF REV__ENST00000377503.6_1_5:159681329-159707642:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 459.9061584472656 3 459.906482 1376.69762 NaN NaN NaN NaN NaN NaN NaN 14.848 1 14.848 14.348 15.348 0 0 0 0 0.23698 1 2235 2235 1.4551 0.67859 1 + 20716 13308 13542 13547 20585 20585 0.024336070491926876 IHDTVVRAAT 10 Unmodified _IHDTVVRAAT_ 0 0 0 REV__MER65-int_dup829|chr19:41730434-41731149:+|4.724704930580082|0.0139534672083954|8.4|482.0|51|3|anti-sense REV__MER65-int_dup829|chr19:41730434-41731149:+|4.724704930580082|0.0139534672083954|8.4|482.0|51|3|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2821655273438 2 541.80128 1081.58801 0.36399 0.00019721 -0.096308 -5.218E-05 0.26769 0.00014503 541.8011996572611 24.885 0.23198 24.885 24.715 24.947 0 10 6 2 0 0 0 0.88533 1 4297 4297 8.7454 5.1489 1 832130 + 20717 23842 13543 13548 20586 20586 0.05047646220509705 IHDWKVDRTTT 11 Unmodified _IHDWKVDRTTT_ 0 0 0 tr|U7SLU1|U7SLU1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01892PE=4SV=1 tr|U7SLU1|U7SLU1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01892PE=4SV=1 tr|U7SLU1|U7SLU1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01892PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.235107421875 3 457.905364 1370.69426 -0.5902 -0.00027025 -0.4356 -0.00019946 -1.0258 -0.00046972 457.90553993576214 16.002 0.31783 14.78 14.537 14.855 -1.2219 11 8 2 0 0 0 0.806 1 2249 2249 2.8433 0 1 220280 20718 25993 13544 13549 20587 20587 0.02374356995164817 IHEEKFAAV 9 Unmodified _IHEEKFAAV_ 0 0 0 REV__ENST00000543754.1_1_12:132425763-132428128:+|nuORF REV__ENST00000543754.1_1_12:132425763-132428128:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2789306640625 2 522.279649 1042.54475 -0.26128 -0.00013646 1.5956 0.00083336 1.3343 0.0006969 522.2804184800003 59.398 0.38062 56.488 56.318 56.699 -2.9105 14 10 2 0 0 0 0.65387 1 11406 11406 9.3831 2.0939 1 552650 + 20719 18546 13545 13550 20588 20588 0.025174564432290936 IHEEKFAAV 9 Unmodified _IHEEKFAAV_ 0 0 0 REV__ENST00000543754.1_1_12:132425763-132428128:+|nuORF REV__ENST00000543754.1_1_12:132425763-132428128:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 522.279649 1042.54475 0.0051785 2.7046E-06 0.32586 0.00017019 0.33104 0.0001729 522.2795764528232 56.705 0.34563 56.705 56.536 56.882 0 0.10852 -0.00010648 NaN 9.3831 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 932180 + 20720 18546 13545 13550 0.025174564432290936 IHELAEAF 8 Unmodified _IHELAEAF_ 0 0 0 nc|ENSG00000064886|Q15782-5|CHI3L2;nc|ENSG00000064886|Q15782-6|CHI3L2;ENSG00000064886|ENST00000369748|CHI3L2 nc|ENSG00000064886|Q15782-5|CHI3L2 nc|ENSG00000064886|Q15782-5|CHI3L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2398681640625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 142.03 1 137.38 136.88 137.88 -4.6493 0 0 0 0.21323 1 28069 28069 14.582 1.0738 1 20721 1344 13546 13551 20589 20589 -0.0016619051090174253 IHESLSLLR 9 Unmodified _IHESLSLLR_ 0 0 0 ENSG00000214929|ENST00000344803|SPATA31D1;ENSG00000189357|ENST00000419782|SPATA31D4;ENSG00000186788|ENST00000445385|SPATA31D3 ENSG00000214929|ENST00000344803|SPATA31D1 ENSG00000214929|ENST00000344803|SPATA31D1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0613708496094 3 356.545108 1066.61349 -0.41983 -0.00014969 0.54493 0.00019429 0.1251 4.4604E-05 356.5452583650371 90.361 0.53515 90.361 90.115 90.651 0 20 14 2 0 0 0 0.84582 1 17646 17646 8.1555 0 1 1500600 20722 7736 13547 13552 20590 20590 0.08285120742948493 IHFCKHFF 8 Unmodified _IHFCKHFF_ 0 0 0 ENST00000481154.1_1_7:77214868-77221624:+|nuORF ENST00000481154.1_1_7:77214868-77221624:+|nuORF ENST00000481154.1_1_7:77214868-77221624:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 3 360.181224 1077.52184 NaN NaN NaN NaN NaN NaN NaN 26.428 1 24.506 24.006 25.006 -1.9222 0 0 0 0.21486 1 4379 4379 4.3292 0 1 20723 10368 13548 13553 20591 20591 -0.013818411552165344 IHFLVGFV 8 Unmodified _IHFLVGFV_ 0 0 0 ENSG00000183150|ENST00000651487|GPR19 ENSG00000183150|ENST00000651487|GPR19 ENSG00000183150|ENST00000651487|GPR19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2582702636719 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 5.2825 1 5.2825 4.7825 5.7825 0 0 0 0 0.21486 1 253 253 0 0 1 20724 6832 13549 13554 20592 20592 0.06467884490723463 IHFLVGFV 8 Unmodified _IHFLVGFV_ 0 0 0 ENSG00000183150|ENST00000651487|GPR19 ENSG00000183150|ENST00000651487|GPR19 ENSG00000183150|ENST00000651487|GPR19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.19793701171875 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 9.0178 1 9.0178 8.5178 9.5178 0 0 0 0 0.21486 1 1002 1002 0 0 1 20725 6832 13549 13554 20593 20593 0.06467884490723463 IHFLVGFV 8 Unmodified _IHFLVGFV_ 0 0 0 ENSG00000183150|ENST00000651487|GPR19 ENSG00000183150|ENST00000651487|GPR19 ENSG00000183150|ENST00000651487|GPR19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.20440673828125 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 9.939 1 9.939 9.439 10.439 0 0 0 0 0.21486 1 1202 1202 0 0 1 20726 6832 13549 13554 20594 20594 0.06467884490723463 IHFRQHQI 8 Unmodified _IHFRQHQI_ 0 0 0 REV__ZNF71|p.V411M|1|0.21|ENSG00000197951|chr19:56622518-56622518|G/A|missense_variant REV__ZNF71|p.V411M|1|0.21|ENSG00000197951|chr19:56622518-56622518|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2018127441406 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 111.18 1 111.18 110.68 111.68 0 0 0 0 0.21486 1 21869 21869 6.7232 0.93973 1 + 20727 19377 13550 13555 20595 20595 0.047508068684237514 IHFRQHQI 8 Unmodified _IHFRQHQI_ 0 0 0 REV__ZNF71|p.V411M|1|0.21|ENSG00000197951|chr19:56622518-56622518|G/A|missense_variant REV__ZNF71|p.V411M|1|0.21|ENSG00000197951|chr19:56622518-56622518|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20208740234375 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 115.3 1 110.98 110.48 111.48 -4.3136 0 0 0 0.21486 1 22197 22197 3.9444 0 1 + 20728 19377 13550 13555 20596 20596 0.047508068684237514 IHGFVHLRPQ 10 Unmodified _IHGFVHLRPQ_ 0 0 0 REV__ENSG00000186732|ENST00000443721|MPPED1 REV__ENSG00000186732|ENST00000443721|MPPED1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3004760742188 2 602.340907 1202.66726 NaN NaN NaN NaN NaN NaN NaN 145.1 1 140.16 139.66 140.66 -4.9445 0 0 0 0.22569 1 28046 28046 15.847 6.3032 1 + 20729 19050 13551 13556 20597 20597 0.07403337965320134 IHGKDTVEVE 10 Unmodified _IHGKDTVEVE_ 0 0 0 SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.I2020Nfs*4|1|0.32|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant;SETX|p.S1600*|1|0.07|ENSG00000107290|chr9:132326800-132326801|-/A|frameshift_variant;SETX|p.F1748Sfs*3|1|0.55|ENSG00000107290|chr9:132326355-132326355|A/-|frameshift_variant SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.17437744140625 3 376.196144 1125.5666 NaN NaN NaN NaN NaN NaN NaN 72.155 1 68.845 68.345 69.345 -3.3107 0 0 0 0.22588 1 14062 14062 3.5871 0 1 20730 2419 13552 13557 20598 20598 0.008842164011412024 IHGVLMKM 8 Unmodified _IHGVLMKM_ 0 0 0 REV__ENST00000469716.1_1_7:95053779-95064326:-|nuORF REV__ENST00000469716.1_1_7:95053779-95064326:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2399597167969 2 464.758984 927.503414 -0.048284 -2.244E-05 0.53364 0.00024801 0.48536 0.00022557 464.75924725698684 136.76 1.0198 132.12 131.64 132.66 -4.6399 46 28 2 0 0 0 0.94155 1 26904 26904 22.453 22.453 1 3005500 + 20731 22017 13553 13558 20599 20599 0.03676280878562466 IHGVLMKM 8 Unmodified _IHGVLMKM_ 0 0 0 REV__ENST00000469716.1_1_7:95053779-95064326:-|nuORF REV__ENST00000469716.1_1_7:95053779-95064326:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2398681640625 2 464.758984 927.503414 0.023426 1.0887E-05 0.56339 0.00026184 0.58682 0.00027273 464.75922312877645 137.23 1.1978 132.31 131.53 132.72 -4.9216 61 33 2 0 0 0 0.94155 1 26242 26242 15.768 15.768 1 3436600 + 20732 22017 13553 13558 20600 20600 0.03676280878562466 IHHFVTTKEFD 11 Unmodified _IHHFVTTKEFD_ 0 0 0 REV__DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant REV__DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2342529296875 3 458.56646 1372.67755 0.44748 0.0002052 -0.37983 -0.00017418 0.067647 3.1021E-05 458.5662671940696 41.571 0.59164 41.571 41.269 41.861 0 29 14 3 0 0 0 0.63394 2 7802 7802;7805 6.6235 1.2207 1 2145300 + 20733 13733 13554 13559 20601;20602 20601 0.006118561092307573 IHHFVTTKEFD 11 Unmodified _IHHFVTTKEFD_ 0 0 0 REV__DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant REV__DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23382568359375 3 458.56646 1372.67755 -0.13183 -6.0452E-05 -0.11076 -5.0789E-05 -0.24258 -0.00011124 458.56651140049985 44.463 0.73293 41.673 41.186 41.919 -2.79 40 20 3 0 0 0 0.77537 1 8314 8314 6.6235 1.9075 1 2424700 + 20734 13733 13554 13559 20603 20603 0.006118561092307573 IHHFVTTKEFD 11 Unmodified _IHHFVTTKEFD_ 0 0 0 REV__DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant REV__DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22589111328125 3 458.56646 1372.67755 -0.082577 -3.7867E-05 0.25546 0.00011715 0.17288 7.9278E-05 458.5664811659679 44.613 0.65167 41.847 41.36 42.012 -2.7661 33 13 3 0 0 0 0.77537 1 8023 8023 6.6235 1.9075 1 2525300 + 20735 13733 13554 13559 20604 20604 0.006118561092307573 IHHHVSLQ 8 Unmodified _IHHHVSLQ_ 0 0 0 REV__ENST00000472067.1_1_7:142991698-142998016:+|nuORF REV__ENST00000472067.1_1_7:142991698-142998016:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.179931640625 3 324.178759 969.514448 NaN NaN NaN NaN NaN NaN NaN 66.772 1 63.663 63.163 64.163 -3.1086 0 0 0 0.21486 1 12945 12945 3.9444 0 1 + 20736 22049 13555 13560 20605 20605 0.028471425687143892 IHHHVSLQ 8 Unmodified _IHHHVSLQ_ 0 0 0 REV__ENST00000472067.1_1_7:142991698-142998016:+|nuORF REV__ENST00000472067.1_1_7:142991698-142998016:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1796875 3 324.178759 969.514448 NaN NaN NaN NaN NaN NaN NaN 67.507 1 64.398 63.898 64.898 -3.1086 0 0 0 0.21486 1 13093 13093 1.6526 0 1 + 20737 22049 13555 13560 20606 20606 0.028471425687143892 IHHIHYKDMLS 11 Unmodified _IHHIHYKDMLS_ 0 0 0 REV__PTPN13|p.S1749L|1|0.5|ENSG00000163629|chr4:86772855-86772855|C/T|missense_variant REV__PTPN13|p.S1749L|1|0.5|ENSG00000163629|chr4:86772855-86772855|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2499084472656 3 465.23969 1392.69724 NaN NaN NaN NaN NaN NaN NaN 69.723 1 66.333 65.833 66.833 -3.3903 0 0 0 0.22632 1 13192 13192 0.172 0.14579 1 + 20738 24527 13556 13561 20607 20607 0.01659908848341729 IHHRQQFI 8 Unmodified _IHHRQQFI_ 0 0 0 nc|ENSG00000141068|Q8IVT5-4|KSR1;nc|ENSG00000141068|Q8IVT5-3|KSR1;nc|ENSG00000141068|Q8IVT5-2|KSR1;nc|ENSG00000141068|Q8IVT5|KSR1;ENSG00000141068|ENST00000644974|KSR1 nc|ENSG00000141068|Q8IVT5-4|KSR1 nc|ENSG00000141068|Q8IVT5-4|KSR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013244628906 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 61.505 1 61.505 61.005 62.005 0 0 0 0 0.21486 1 11798 11798 7.2892 0 1 20739 4346 13557 13562 20608 20608 0.047508068684237514 IHIKALRVF 9 Unmodified _IHIKALRVF_ 0 0 0 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.81390380859375 3 366.237838 1095.69168 -0.16201 -5.9335E-05 1.4128 0.00051743 1.2508 0.0004581 366.2383220462379 85.055 0.51894 85.055 84.733 85.252 0 21 14 2 0 0 0 0.63755 1 16541 16541 0.0033805 0 1 1024800 20740 4527 13558 13563 20609 20609 0.14766598118831098 IHIKALRVF 9 Unmodified _IHIKALRVF_ 0 0 0 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 366.237838 1095.69168 -0.3367 -0.00012331 1.4628 0.00053572 1.1261 0.0004124 366.23830921733446 89.178 0.59398 85.385 85.125 85.719 -3.7926 0.055804 0.00019592 NaN 0.0033805 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1521100 20741 4527 13558 13563 0.14766598118831098 IHIKALRVF 9 Unmodified _IHIKALRVF_ 0 0 0 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 366.237838 1095.69168 0.39334 0.00014406 0.85453 0.00031296 1.2479 0.00045702 366.238090107294 89.592 0.52475 85.548 85.171 85.696 -4.0443 0.21871 -0.00047236 NaN 0.0033805 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 934490 20742 4527 13558 13563 0.14766598118831098 IHILILLLLLA 11 Unmodified _IHILILLLLLA_ 0 0 0 ENSG00000224420|ENST00000420022|ADM5 ENSG00000224420|ENST00000420022|ADM5 ENSG00000224420|ENST00000420022|ADM5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7586669921875 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 127.01 1 127.01 126.51 127.51 0 0 0 0 0.22632 1 25070 25070 0 0 1 20743 7782 13559 13564 20610 20610 0.25098910366682503 IHILILLLLLA 11 Unmodified _IHILILLLLLA_ 0 0 0 ENSG00000224420|ENST00000420022|ADM5 ENSG00000224420|ENST00000420022|ADM5 ENSG00000224420|ENST00000420022|ADM5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7688598632812 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 79.277 1 75.767 75.267 76.267 -3.5102 0 0 0 0.22632 1 15485 15485 0 0 1 20744 7782 13559 13564 20611 20611 0.25098910366682503 IHILILLLLLA 11 Unmodified _IHILILLLLLA_ 0 0 0 ENSG00000224420|ENST00000420022|ADM5 ENSG00000224420|ENST00000420022|ADM5 ENSG00000224420|ENST00000420022|ADM5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7742309570312 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 134.68 1 129.81 129.31 130.31 -4.8726 0 0 0 0.22632 1 25870 25870 0 0 1 20745 7782 13559 13564 20612 20612 0.25098910366682503 IHILLRQVVL 10 Unmodified _IHILLRQVVL_ 0 0 0 REV__ENST00000495526.5_1_1:40207631-40211283:+|nuORF REV__ENST00000495526.5_1_1:40207631-40211283:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.298583984375 2 602.400433 1202.78631 0.60074 0.00036189 -3.8245 -0.0023039 -3.2238 -0.001942 602.9000400760344 172.36 0.13625 167.48 167.41 167.55 -4.881 5 3 2 0 0 0 0.76236 1 34199 34199 1.8442 0 1 13137000 + 20746 22377 13560 13565 20613 20613 0.19303111870181056 IHIVHAWNFKQ 11 Unmodified _IHIVHAWNFKQ_ 0 0 0 REV__nc|ENSG00000140563|Q6DN12-6|MCTP2 REV__nc|ENSG00000140563|Q6DN12-6|MCTP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24261474609375 3 464.922689 1391.74624 -0.2365 -0.00010995 1.2881 0.00059885 1.0516 0.0004889 464.9230052497677 34.595 0.31108 32.278 32.083 32.395 -2.3175 19 8 3 0 0 0 0.79196 1 6345 6345 4.7159 0.59929 1 651820 + 20747 24072 13561 13566 20614 20614 0.06603565199588957 IHKIKKSGPD 10 Unmodified _IHKIKKSGPD_ 0 0 0 REV__CDH8|p.Y98H|1|0.38|ENSG00000150394|chr16:61901434-61901434|A/G|missense_variant REV__CDH8|p.Y98H|1|0.38|ENSG00000150394|chr16:61901434-61901434|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2081604003906 3 374.892507 1121.65569 -0.12167 -4.5613E-05 -0.34839 -0.00013061 -0.47006 -0.00017622 374.89241636138775 28.743 0.35344 28.743 28.561 28.914 0 16 9 2 0 0 0 0.70357 1 5136 5136 6.1918 0 1 1278200 + 20748 13347 13562 13567 20615 20615 0.09973096151315985 IHKSMIYTGC 10 Unmodified _IHKSMIYTGC_ 0 0 0 nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106 nc|ENSG00000103994|Q9H2Y7-2|ZNF106 nc|ENSG00000103994|Q9H2Y7-2|ZNF106 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3154296875 2 576.780644 1151.54674 -1.517 -0.000875 -1.3411 -0.00077355 -2.8582 -0.0016485 576.7797614044066 15.993 0.17009 14.64 14.546 14.716 -1.3534 6 4 2 0 0 0 0.91149 1 2225 2225 6.2058 1.4498 1 244150 20749 2213 13563 13568 20616 20616 -0.022975741348091105 IHKSMIYTGC 10 Unmodified _IHKSMIYTGC_ 0 0 0 nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106 nc|ENSG00000103994|Q9H2Y7-2|ZNF106 nc|ENSG00000103994|Q9H2Y7-2|ZNF106 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.780644 1151.54674 0.19063 0.00010995 -1.7971 -0.0010365 -1.6064 -0.00092656 576.7792509167034 14.946 0.14233 14.946 14.842 14.984 0 0.17874 0.00012761 NaN 6.2058 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 527020 20750 2213 13563 13568 -0.022975741348091105 IHKSMIYTGC 10 Unmodified _IHKSMIYTGC_ 0 0 0 nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106 nc|ENSG00000103994|Q9H2Y7-2|ZNF106 nc|ENSG00000103994|Q9H2Y7-2|ZNF106 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 576.780644 1151.54674 -0.46124 -0.00026604 -2.3778 -0.0013715 -2.839 -0.0016375 576.7793974882742 15.931 0.14309 14.715 14.619 14.762 -1.2159 -0.051605 -0.00054228 NaN 6.2058 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 334990 20751 2213 13563 13568 -0.022975741348091105 IHKYLYEL 8 Unmodified _IHKYLYEL_ 0 0 0 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016906738281 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 104.02 1 104.02 103.52 104.52 0 0 0 0 0.21486 1 20445 20445 11.64 1.4897 1 20752 499 13564 13569 20617 20617 0.05019217482708882 IHKYLYEL 8 Unmodified _IHKYLYEL_ 0 0 0 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 104.28 1 104.28 103.78 104.78 0 0 0 0 0.21486 1 20493 20493 7.2892 0.65886 1 20753 499 13564 13569 20618 20618 0.05019217482708882 IHKYLYEL 8 Unmodified _IHKYLYEL_ 0 0 0 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 105.23 1 105.23 104.73 105.73 0 0 0 0 0.21486 1 20684 20684 10.824 5.527 1 20754 499 13564 13569 20619 20619 0.05019217482708882 IHKYLYEL 8 Unmodified _IHKYLYEL_ 0 0 0 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017517089844 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 108.26 1 103.94 103.44 104.44 -4.32 0 0 0 0.21486 1 21329 21329 11.64 2.2572 1 20755 499 13564 13569 20620 20620 0.05019217482708882 IHKYLYEL 8 Unmodified _IHKYLYEL_ 0 0 0 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2021179199219 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 115.33 1 110.86 110.36 111.36 -4.4726 0 0 0 0.21486 1 22732 22732 3.9444 0 1 20756 499 13564 13569 20621 20621 0.05019217482708882 IHKYLYEL 8 Unmodified _IHKYLYEL_ 0 0 0 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20184326171875 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 105.3 1 100.92 100.42 101.42 -4.3764 0 0 0 0.21486 1 20184 20184 3.9444 0.068064 1 20757 499 13564 13569 20622 20622 0.05019217482708882 IHKYLYEL 8 Unmodified _IHKYLYEL_ 0 0 0 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 108.2 1 103.79 103.29 104.29 -4.4121 0 0 0 0.21486 1 20759 20759 7.2892 0 1 20758 499 13564 13569 20623 20623 0.05019217482708882 IHKYLYEL 8 Unmodified _IHKYLYEL_ 0 0 0 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016296386719 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 108.76 1 104.3 103.8 104.8 -4.4518 0 0 0 0.21486 1 20871 20871 3.9444 0 1 20759 499 13564 13569 20624 20624 0.05019217482708882 IHKYLYEL 8 Unmodified _IHKYLYEL_ 0 0 0 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017822265625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 108.54 1 104.4 103.9 104.9 -4.135 0 0 0 0.21486 1 20882 20882 3.9444 0 1 20760 499 13564 13569 20625 20625 0.05019217482708882 IHKYLYEL 8 Unmodified _IHKYLYEL_ 0 0 0 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 108.8 1 104.62 104.12 105.12 -4.1826 0 0 0 0.21486 1 20938 20938 3.9444 0.068064 1 20761 499 13564 13569 20626 20626 0.05019217482708882 IHKYLYEL 8 Unmodified _IHKYLYEL_ 0 0 0 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017517089844 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 115.07 1 110.76 110.26 111.26 -4.3136 0 0 0 0.21486 1 22157 22157 3.9444 0 1 20762 499 13564 13569 20627 20627 0.05019217482708882 IHKYLYEL 8 Unmodified _IHKYLYEL_ 0 0 0 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant;CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant;nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.1653747558594 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 115.23 1 110.91 110.41 111.41 -4.3136 0 0 0 0.21486 1 22185 22185 3.9444 1.2092 1 20763 499 13564 13569 20628 20628 0.05019217482708882 IHLIIGANEV 10 Unmodified _IHLIIGANEV_ 0 0 0 REV__ENSG00000167916|ENST00000264651|KRT24 REV__ENSG00000167916|ENST00000264651|KRT24 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21258544921875 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 65.979 1 62.696 62.196 63.196 -3.2832 0 0 0 0.22588 1 12411 12411 6.6304 1.3335 1 + + 20764 13539 13565 13570 20629 20629 0.0825400488570267 IHLLLIMNK 9 Unmodified _IHLLLIMNK_ 0 0 0 ENSG00000139055|ENST00000266397|ERP27 ENSG00000139055|ENST00000266397|ERP27 ENSG00000139055|ENST00000266397|ERP27 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7728271484375 2 547.841362 1093.66817 NaN NaN NaN NaN NaN NaN NaN 93.122 1 88.979 88.479 89.479 -4.1435 0 0 0 0.23508 1 17747 17747 4.756 0 1 20765 4220 13566 13571 20630 20630 0.12508416290006608 IHLLVFILL 9 Unmodified _IHLLVFILL_ 0 0 0 REV__ENST00000361283.2_1_13:115080025-115086620:+|nuORF REV__ENST00000361283.2_1_13:115080025-115086620:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2670288085938 2 540.862621 1079.71069 0.12481 6.7508E-05 0.25508 0.00013796 0.3799 0.00020547 541.3631658830574 133.62 0.20625 128.75 128.65 128.85 -4.8726 7 5 2 0 0 0 0.63929 1 25674 25674 0.40827 0 1 1040500 + 20766 20879 13567 13572 20631 20631 0.17402134689905324 IHLNIKGRK 9 Unmodified _IHLNIKGRK_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant;CCDC168|p.A4132Qfs*29|1|0.23|ENSG00000175820|chr13:102738304-102738304|T/-|frameshift_variant;CCDC168|p.A3265Vfs*21|1|0.06|ENSG00000175820|chr13:102740903-102740904|-/GAAGAAAAATATA|frameshift_variant ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.232975 1077.6771 NaN NaN NaN NaN NaN NaN NaN 54.024 1 54.024 53.524 54.524 0 0 0 0 0.23508 1 10297 10297 0.86438 0 1 20767 414 13568 13573 20632 20632 0.14136525970684488 IHLVKKIID 9 Unmodified _IHLVKKIID_ 0 0 0 REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1 REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2007141113281 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 65.666 1 62.619 62.119 63.119 -3.047 0 0 0 0.23508 1 12712 12712 5.2969 0.96765 1 + 20768 25292 13569 13574 20633 20633 0.15527758679127146 IHLVLSSVQR 10 Unmodified _IHLVLSSVQR_ 0 0 0 REV__RASA1|p.V643Gfs*4|1|0.04|ENSG00000145715|chr5:87374313-87374314|-/GGCT|frameshift_variant;REV__ENST00000515800.6_1_5:86667940-86686697:+|nuORF REV__RASA1|p.V643Gfs*4|1|0.04|ENSG00000145715|chr5:87374313-87374314|-/GGCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3262939453125 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 160.97 1 155.72 155.22 156.22 -5.2526 0 0 0 2.8426 1 31238 31238 0.043787 0 1 + 20769 16848;22594 13570 13575 20634 20634 0.11292785042655851 IHNKNAGRTL 10 Unmodified _IHNKNAGRTL_ 0 0 0 REV__tr|U7T3R4|U7T3R4_FUSNUGlycerolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glpKPE=3SV=1 REV__tr|U7T3R4|U7T3R4_FUSNUGlycerolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glpKPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20855712890625 3 375.215873 1122.62579 -0.039768 -1.4922E-05 -0.14113 -5.2955E-05 -0.1809 -6.7877E-05 375.2158068821219 39.077 0.48232 39.077 38.856 39.338 0 24 13 2 0 0 0 0.72703 1 7244 7244 8.4443 0.83535 1 1112400 + 20770 25373 13571 13576 20635 20635 0.06938157206013784 IHPLPMTI 8 Unmodified _IHPLPMTI_ 0 0 0 REV__SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant REV__SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5371398925781 2 461.264956 920.515359 NaN NaN NaN NaN NaN NaN NaN 160.99 1 155.74 155.24 156.24 -5.2526 0 0 0 0.23749 1 31241 31241 0.12286 0 1 + 20771 16813 13572 13577 20636 20636 0.0519222089340019 IHQLLKRKY 9 Unmodified _IHQLLKRKY_ 0 0 0 ENST00000431180.5_1_3:47098834-47103683:-|nuORF ENST00000431180.5_1_3:47098834-47103683:-|nuORF ENST00000431180.5_1_3:47098834-47103683:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.34979248046875 3 400.252147 1197.73461 NaN NaN NaN NaN NaN NaN NaN 57.141 1 54.246 53.746 54.746 -2.8944 0 0 0 0.23508 1 10966 10966 2.9952 0.90923 1 20772 9782 13573 13578 20637 20637 0.14365368176277116 IHRFYRKHVLH 11 Unmodified _IHRFYRKHVLH_ 0 0 0 ENST00000267068.5_2_13:33110836-33110986:-|nuORF ENST00000267068.5_2_13:33110836-33110986:-|nuORF ENST00000267068.5_2_13:33110836-33110986:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 753.43505859375 2 753.433661 1504.85277 NaN NaN NaN NaN NaN NaN NaN 11.651 1 11.651 11.151 12.151 0 0 0 0 0.22632 1 1562 1562 0.026206 0 1 20773 8379 13574 13579 20638 20638 0.12053740484793707 IHRKKLLLK 9 Unmodified _IHRKKLLLK_ 0 0 0 REV__ENSG00000047315|ENST00000314595|POLR2B REV__ENSG00000047315|ENST00000314595|POLR2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 574.9932250976562 2 574.903143 1147.79173 NaN NaN NaN NaN NaN NaN NaN 172.16 1 167.26 166.76 167.76 -4.8977 0 0 0 0.19626 1 34137 34137 0 0 1 + 20774 14060 13575 13580 20639 20639 0.2237483545266059 IHRKKLLLKQ 10 Unmodified _IHRKKLLLKQ_ 0 0 0 REV__ENSG00000047315|ENST00000314595|POLR2B REV__ENSG00000047315|ENST00000314595|POLR2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 426.2916564941406 3 426.290713 1275.85031 NaN NaN NaN NaN NaN NaN NaN 158.83 1 153.56 153.06 154.06 -5.2712 0 0 0 0.22588 1 30817 30817 0.15932 0.01943 1 + 20775 14060 13576 13581 20640 20640 0.22341892027134236 IHRLKLVED 9 Unmodified _IHRLKLVED_ 0 0 0 REV__BCL10|p.N108H|1|0.09|ENSG00000142867|chr1:85270642-85270642|T/G|missense_variant REV__BCL10|p.N108H|1|0.09|ENSG00000142867|chr1:85270642-85270642|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20977783203125 3 374.892507 1121.65569 -0.12167 -4.5613E-05 -0.34839 -0.00013061 -0.47006 -0.00017622 374.89241636138775 28.743 0.35344 28.743 28.561 28.914 0 16 9 2 0 0 0 0.62102 1 5085 5085 7.609 1.4171 1 1278200 + 20776 13185 13577 13582 20641 20641 0.09973096151315985 IHRPSLSTTL 10 Unmodified _IHRPSLSTTL_ 0 0 0 REV__CCZ1|p.F253S|1|0.28|ENSG00000146574|chr7:5910094-5910094|T/C|missense_variant REV__CCZ1|p.F253S|1|0.28|ENSG00000146574|chr7:5910094-5910094|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2094421386719 3 375.552262 1123.63496 0.069193 2.5985E-05 -0.34603 -0.00012995 -0.27684 -0.00010397 375.5520950553893 31.536 0.42365 29.305 29.059 29.483 -2.2305 25 11 3 0 0 0 0.91051 1 5677 5677 9.544 3.3521 1 2164300 + 20777 13321 13578 13583 20642 20642 0.07808505771663476 IHRPSLSTTL 10 Unmodified _IHRPSLSTTL_ 0 0 0 REV__CCZ1|p.F253S|1|0.28|ENSG00000146574|chr7:5910094-5910094|T/C|missense_variant REV__CCZ1|p.F253S|1|0.28|ENSG00000146574|chr7:5910094-5910094|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2094421386719 3 375.552262 1123.63496 -0.19076 -7.164E-05 -0.20566 -7.7235E-05 -0.39641 -0.00014887 375.55216161392025 31.471 0.49386 29.323 29.057 29.551 -2.1483 31 13 3 0 0 0 0.91051 1 5370 5370 9.544 3.3521 1 1937700 + 20778 13321 13578 13583 20643 20643 0.07808505771663476 IHRRRDPE 8 Unmodified _IHRRRDPE_ 0 0 0 ENST00000530283.1_1_11:111385578-111385695:-|nuORF ENST00000530283.1_1_11:111385578-111385695:-|nuORF ENST00000530283.1_1_11:111385578-111385695:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016906738281 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 110.81 1 110.81 110.31 111.31 0 0 0 0 0.21486 1 21794 21794 3.9444 1.2092 1 20779 10954 13579 13584 20644 20644 0.04348717374705302 IHRRRDPE 8 Unmodified _IHRRRDPE_ 0 0 0 ENST00000530283.1_1_11:111385578-111385695:-|nuORF ENST00000530283.1_1_11:111385578-111385695:-|nuORF ENST00000530283.1_1_11:111385578-111385695:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201904296875 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 114.94 1 110.46 109.96 110.96 -4.4726 0 0 0 0.21486 1 22653 22653 6.7232 2.7788 1 20780 10954 13579 13584 20645 20645 0.04348717374705302 IHRRRDPE 8 Unmodified _IHRRRDPE_ 0 0 0 ENST00000530283.1_1_11:111385578-111385695:-|nuORF ENST00000530283.1_1_11:111385578-111385695:-|nuORF ENST00000530283.1_1_11:111385578-111385695:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2013244628906 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 115.17 1 110.61 110.11 111.11 -4.555 0 0 0 0.21486 1 22110 22110 3.9444 0.94915 1 20781 10954 13579 13584 20646 20646 0.04348717374705302 IHSHAVFLPDR 11 Unmodified _IHSHAVFLPDR_ 0 0 0 ENST00000381801.5_1_13:25861436-25861823:-|nuORF ENST00000381801.5_1_13:25861436-25861823:-|nuORF ENST00000381801.5_1_13:25861436-25861823:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 646.63916015625 2 646.348929 1290.6833 NaN NaN NaN NaN NaN NaN NaN 41.867 1 41.867 41.367 42.367 0 0 0 0 0.23018 1 7819 7819 8.1555 3.3995 1 20782 9334 13580 13585 20647 20647 0.04958999411564946 IHSIPKGTEI 10 Unmodified _IHSIPKGTEI_ 0 0 0 KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.K873Nfs*8|4|0.41|ENSG00000005483|chr7:105106538-105106538|A/-|frameshift_variant;KMT2E|p.T553Nfs*4|1|0.43|ENSG00000005483|chr7:105091243-105091244|-/A|frameshift_variant;KMT2E|p.T553Lfs*7|1|0.44|ENSG00000005483|chr7:105091244-105091244|A/-|frameshift_variant;KMT2E|p.R802Kfs*8|1|0.35|ENSG00000005483|chr7:105105640-105105641|-/A|frameshift_variant;nc|ENSG00000005483|Q8IZD2-4|KMT2E;nc|ENSG00000005483|Q8IZD2-3|KMT2E KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-3|KMT2E KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77392578125 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 162.35 1 157.16 156.66 157.66 -5.1878 0 0 0 0.22552 1 31522 31522 18.146 1.0335 1 20783 993;12204 13581 13586 20648 20648 0.07009701023071102 IHSWKKQR 8 Unmodified _IHSWKKQR_ 0 0 0 REV__GUCY2C|p.K528Nfs*4|1|0.35|ENSG00000070019|chr12:14651980-14651980|T/-|frameshift_variant REV__GUCY2C|p.K528Nfs*4|1|0.35|ENSG00000070019|chr12:14651980-14651980|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.5078430175781 3 361.545442 1081.6145 -1.6067 -0.00058091 0.38922 0.00014072 -1.2175 -0.00044019 361.54557140521285 20.046 0.62362 18.411 18.227 18.851 -1.6351 45 17 4 0 0 0 8448 1 3038 3038 0.12286 0 1 19991000 + 20784 14248 13582 13587 20649 20649 0.07695379902520472 IHSWKKQR 8 Unmodified _IHSWKKQR_ 0 0 0 REV__GUCY2C|p.K528Nfs*4|1|0.35|ENSG00000070019|chr12:14651980-14651980|T/-|frameshift_variant REV__GUCY2C|p.K528Nfs*4|1|0.35|ENSG00000070019|chr12:14651980-14651980|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 361.545442 1081.6145 -0.28811 -0.00010416 0.001462 5.286E-07 -0.28664 -0.00010364 361.5453776584084 18.32 0.42239 18.32 18.126 18.548 0 -0.045504 -0.00023563 NaN 0.12286 30 11 4 NaN NaN NaN NaN 0 NaN NaN 0 21706000 + 20785 14248 13582 13587 0.07695379902520472 IHTAEKTY 8 Unmodified _IHTAEKTY_ 0 0 0 ENST00000600110.1_1_19:23779328-23779892:+|nuORF;nc|ENSG00000186300|Q8NEP9-2|ZNF555;ZNF555|p.E540Dfs*28|1|0.06|ENSG00000186300|chr19:2853684-2853685|-/T|frameshift_variant;nc|ENSG00000186300|Q8NEP9-4|ZNF555;ENSG00000186300|ENST00000334241|ZNF555 ENST00000600110.1_1_19:23779328-23779892:+|nuORF ENST00000600110.1_1_19:23779328-23779892:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7844543457031 2 481.750724 961.486896 NaN NaN NaN NaN NaN NaN NaN 21.764 1 21.764 21.264 22.264 0 0 0 0 0.21323 1 3655 3655 14.582 2.0501 1 20786 11698 13583 13588 20650 20650 0.004611945178112364 IHTRRHRILNF 11 Unmodified _IHTRRHRILNF_ 0 0 0 REV__ENSG00000180938|ENST00000319286|ZNF572 REV__ENSG00000180938|ENST00000319286|ZNF572 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 731.7322387695312 2 731.928743 1461.84293 NaN NaN NaN NaN NaN NaN NaN 42.047 1 39.396 38.896 39.896 -2.651 0 0 0 0.23698 1 7563 7563 1.4819 0 1 + 20787 18708 13584 13589 20651 20651 0.1304855247942669 IHVRLLKTPQ 10 Unmodified _IHVRLLKTPQ_ 0 0 0 ENST00000521433.1_1_8:89341227-89721666:+|nuORF ENST00000521433.1_1_8:89341227-89721666:+|nuORF ENST00000521433.1_1_8:89341227-89721666:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2899780273438 2 602.879865 1203.74518 1.0699 0.00064503 -0.99294 -0.00059862 0.076974 4.6406E-05 603.3803429957551 144.54 0.73004 139.87 139.57 140.3 -4.6694 29 20 2 0 0 0 0.90598 1 28584 28584 5.7319 0 1 13840000 20788 10848 13585 13590 20652 20652 0.1514535083069859 IHWRRKKQWRK 11 Unmodified _IHWRRKKQWRK_ 0 0 0 ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2647705078125 3 541.326932 1620.95897 NaN NaN NaN NaN NaN NaN NaN 128.66 1 124.03 123.53 124.53 -4.6292 0 0 0 0.22632 1 25365 25365 0.50596 0.33396 1 20789 11783 13586 13591 20653 20653 0.17332496050084956 IHYMYKHKMYR 11 Unmodified _IHYMYKHKMYR_ 0 0 0 nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN;ENSG00000100600|ENST00000334869|LGMN nc|ENSG00000100600|Q99538-3|LGMN nc|ENSG00000100600|Q99538-3|LGMN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3964233398438 2 785.394499 1568.77444 NaN NaN NaN NaN NaN NaN NaN 156.07 1 156.07 155.57 156.57 0 0 0 0 0.23698 1 31300 31300 1.4819 0.15237 1 20790 1996 13587 13592 20654 20654 0.012808037930199134 IHYMYKHKMYR 11 Unmodified _IHYMYKHKMYR_ 0 0 0 nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN;ENSG00000100600|ENST00000334869|LGMN nc|ENSG00000100600|Q99538-3|LGMN nc|ENSG00000100600|Q99538-3|LGMN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.394775390625 2 785.394499 1568.77444 NaN NaN NaN NaN NaN NaN NaN 123.23 1 118.66 118.16 119.16 -4.5757 0 0 0 0.22632 1 24295 24295 0.00056442 0 1 20791 1996 13587 13592 20655 20655 0.012808037930199134 IHYVYIYQKFW 11 Unmodified _IHYVYIYQKFW_ 0 0 0 REV__ENST00000446265.3_1:149648157-149648721:+|nuORF REV__ENST00000446265.3_1:149648157-149648721:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 780.4054565429688 2 780.405912 1558.79727 NaN NaN NaN NaN NaN NaN NaN 168.48 1 163.54 163.04 164.04 -4.9392 0 0 0 0.23698 1 33216 33216 1.4819 0 1 + 20792 21760 13588 13593 20656 20656 0.04022469453775557 IIADLSANY 9 Unmodified _IIADLSANY_ 0 0 0 REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2648620605469 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 79.491 1 75.687 75.187 76.187 -3.8048 0 0 0 0.1599 1 15083 15083 29.082 7.3349 1 + 20793 18430 13589 13594 20657 20657 0.012100613149982564 IIAGGGMEPEL 11 Unmodified _IIAGGGMEPEL_ 0 0 0 tr|U7T3J5|U7T3J5_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00431PE=4SV=1 tr|U7T3J5|U7T3J5_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00431PE=4SV=1 tr|U7T3J5|U7T3J5_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00431PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7799682617188 2 543.778625 1085.5427 NaN NaN NaN NaN NaN NaN NaN 155.13 1 149.88 149.38 150.38 -5.2526 0 0 0 0.16797 1 30080 30080 25.399 7.2643 1 20794 26404 13590 13595 20658 20658 0.003346596431129001 IICAEVRCLQP 11 Unmodified _IICAEVRCLQP_ 0 0 0 ENSG00000181036|ENST00000368106|FCRL6 ENSG00000181036|ENST00000368106|FCRL6 ENSG00000181036|ENST00000368106|FCRL6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7603149414062 2 622.828126 1243.6417 NaN NaN NaN NaN NaN NaN NaN 137.57 1 132.73 132.23 133.23 -4.84 0 0 0 0.22595 1 26506 26506 11.495 2.1116 1 20795 6709 13591 13596 20659 20659 0.029623593363567124 IICAVLTRRLS 11 Unmodified _IICAVLTRRLS_ 0 0 0 ENST00000262376.10_1_16:4930962-4931145:+|nuORF ENST00000262376.10_1_16:4930962-4931145:+|nuORF ENST00000262376.10_1_16:4930962-4931145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7730712890625 2 622.879007 1243.74346 NaN NaN NaN NaN NaN NaN NaN 126.9 1 122.2 121.7 122.7 -4.6998 0 0 0 0.23264 1 24411 24411 6.2058 0.9089 1 20796 8313 13592 13597 20660 20660 0.13133973750450423 IICDLLELSPE 11 Unmodified _IICDLLELSPE_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1;ESPL1|p.Q1311Rfs*21|1|0.46|ENSG00000135476|chr12:53286668-53286669|AG/-|frameshift_variant ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7703857421875 2 622.825772 1243.63699 NaN NaN NaN NaN NaN NaN NaN 153.46 1 153.46 152.96 153.96 0 0 0 0 0.19759 1 30747 30747 19.362 2.7961 1 20797 3928 13593 13598 20661 20661 0.024917536746215774 IICLVRVFRIF 11 Unmodified _IICLVRVFRIF_ 0 0 0 KCNA10|p.R344C|1|0.08|ENSG00000143105|chr1:110517758-110517758|G/A|missense_variant KCNA10|p.R344C|1|0.08|ENSG00000143105|chr1:110517758-110517758|G/A|missense_variant KCNA10|p.R344C|1|0.08|ENSG00000143105|chr1:110517758-110517758|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2413635253906 3 460.284571 1377.83188 NaN NaN NaN NaN NaN NaN NaN 133.64 1 128.77 128.27 129.27 -4.8726 0 0 0 0.22632 1 25680 25680 0.50596 0 1 20798 11977 13594 13599 20662 20662 0.1580801406091723 IICWLSNI 8 Unmodified _IICWLSNI_ 0 0 0 ENSG00000101850|ENST00000467482|GPR143 ENSG00000101850|ENST00000467482|GPR143 ENSG00000101850|ENST00000467482|GPR143 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24273681640625 2 481.262413 960.510274 NaN NaN NaN NaN NaN NaN NaN 105.13 1 100.91 100.41 101.41 -4.2183 0 0 0 0.20378 1 20683 20683 22.453 5.5103 1 20799 2089 13595 13600 20663 20663 0.02843917030781995 IIDAFSRFI 9 Unmodified _IIDAFSRFI_ 0 0 0 ENST00000478267.5_1_3:146234735-146251325:-|nuORF ENST00000478267.5_1_3:146234735-146251325:-|nuORF ENST00000478267.5_1_3:146234735-146251325:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2589111328125 2 541.305667 1080.59678 0.23498 0.0001272 -1.5037 -0.00081398 -1.2688 -0.00068678 541.3046771960595 157.91 0.3553 152.63 152.41 152.76 -5.2748 14 9 2 0 0 0 0.40602 1 30665 30665 25.399 6.1423 1 1253600 20800 10314 13596 13601 20664 20664 0.059706198569983826 IIDDGDSNL 9 Unmodified _IIDDGDSNL_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000183054|Q99666-2|RGPD5 ENSG00000183054|ENST00000329516|RGPD6 ENSG00000183054|ENST00000329516|RGPD6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7653503417969 2 481.227279 960.440005 -0.31479 -0.00015148 0.50584 0.00024342 0.19105 9.1939E-05 481.2275342476902 61.171 0.7207 61.171 60.911 61.631 0 28 20 2 0 0 0 0.54354 1 11764 11764 16.942 5.302 1 1766400 20801 1113 13597 13602 20665 20665 -0.04179709823995381 IIDDGDSNL 9 Unmodified _IIDDGDSNL_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000183054|Q99666-2|RGPD5 ENSG00000183054|ENST00000329516|RGPD6 ENSG00000183054|ENST00000329516|RGPD6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25396728515625 2 481.227279 960.440005 0.078757 3.79E-05 0.4144 0.00019942 0.49316 0.00023732 481.2274816303168 64.1 0.98004 61.103 60.455 61.435 -2.9975 46 27 2 0 0 0 0.2219 1 12383 12383 36.127 3.8215 1 2120000 20802 1113 13597 13602 20666 20666 -0.04179709823995381 IIDDGDSNL 9 Unmodified _IIDDGDSNL_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000183054|Q99666-2|RGPD5 ENSG00000183054|ENST00000329516|RGPD6 ENSG00000183054|ENST00000329516|RGPD6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25469970703125 2 481.227279 960.440005 0.23364 0.00011243 -0.28315 -0.00013626 -0.049513 -2.3827E-05 481.22727926912927 64.578 1.1586 61.119 60.414 61.573 -3.4581 48 32 3 0 0 0 0.54354 1 12116 12116 16.942 3.4344 1 1314700 20803 1113 13597 13602 20667 20667 -0.04179709823995381 IIDDGDSNL 9 Unmodified _IIDDGDSNL_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000183054|Q99666-2|RGPD5 ENSG00000183054|ENST00000329516|RGPD6 ENSG00000183054|ENST00000329516|RGPD6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24371337890625 2 481.227279 960.440005 0.21989 0.00010582 -0.39628 -0.0001907 -0.17639 -8.4884E-05 481.22725810112644 64.495 0.93896 61.238 60.711 61.649 -3.2567 50 26 3 0 0 0 0.36689 1 12102 12102 42.095 13.608 1 1816200 20804 1113 13597 13602 20668 20668 -0.04179709823995381 IIDDPSGNSF 10 Unmodified _IIDDPSGNSF_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2770385742188 2 532.748379 1063.4822 0.31045 0.00016539 -0.88473 -0.00047134 -0.57428 -0.00030594 532.7479447982266 82.63 0.61471 82.63 82.327 82.942 0 33 17 2 0 0 0 0.29449 1 16125 16125 53.833 32.296 1 5580400 20805 2547 13598 13603 20669 20669 -0.046997344155897736 IIDFYLLVR 9 Unmodified _IIDFYLLVR_ 0 0 0 ENST00000542747.5_1_6:149997313-149997388:-|nuORF ENST00000542747.5_1_6:149997313-149997388:-|nuORF ENST00000542747.5_1_6:149997313-149997388:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3170776367188 2 576.344792 1150.67503 NaN NaN NaN NaN NaN NaN NaN 104.36 1 100.02 99.517 100.52 -4.346 0 0 0 0.15147 1 19993 19993 30.225 6.435 1 20806 11093 13599 13604 20670 20670 0.1057205244223951 IIDFYLLVR 9 Unmodified _IIDFYLLVR_ 0 0 0 ENST00000542747.5_1_6:149997313-149997388:-|nuORF ENST00000542747.5_1_6:149997313-149997388:-|nuORF ENST00000542747.5_1_6:149997313-149997388:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3224487304688 2 576.344792 1150.67503 NaN NaN NaN NaN NaN NaN NaN 104.6 1 100.26 99.757 100.76 -4.346 0 0 0 0.15147 1 20039 20039 30.225 3.0016 1 20807 11093 13599 13604 20671 20671 0.1057205244223951 IIDGKIFCV 9 Carbamidomethyl (C) _IIDGKIFC(Carbamidomethyl (C))V_ IIDGKIFC(1)V IIDGKIFC(70)V 0 1 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2736206054688 2 532.794078 1063.5736 0.12711 6.7721E-05 0.42462 0.00022623 0.55172 0.00029396 532.7940204879505 143.22 0.55508 138.57 138.24 138.79 -4.656 22 15 2 0 0 0 0.051332 4 28325 28308;28311;28318;28325 70.332 35.089 1 2415900 20808 4814 13600 13605 20672;20673;20674;20675 20675 6 0.044358577480352324 IIDKDSKT 8 Unmodified _IIDKDSKT_ 0 0 0 nc|ENSG00000162129|Q9H078-3|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;ENST00000538021.5_2_11:72004413-72018253:-|nuORF;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB nc|ENSG00000162129|Q9H078-3|CLPB nc|ENSG00000162129|Q9H078-3|CLPB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353210449219 2 460.258382 918.502212 0.093827 4.3185E-05 -0.23958 -0.00011027 -0.14575 -6.7083E-05 460.258220260011 26.37 0.45359 24.735 24.513 24.966 -1.6347 22 12 2 0 0 0 0.9383 1 4348 4348 25.399 0 1 1366800 20809 5315 13601 13606 20676 20676 0.03970061314987561 IIDKSGSTV 9 Unmodified _IIDKSGSTV_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2303771972656 2 460.258382 918.502212 0.26789 0.0001233 -0.41132 -0.00018931 -0.14343 -6.6015E-05 460.25802860980843 24.83 0.39894 24.83 24.647 25.046 0 21 11 2 0 0 0 0.39339 1 4287 4287 43.772 9.3707 1 1474200 20810 6952 13602 13607 20677 20677 0.039700613149989294 IIDLQQWQ 8 Unmodified _IIDLQQWQ_ 0 0 0 nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF nc|ENSG00000150275|Q96QU1|PCDH15 nc|ENSG00000150275|Q96QU1|PCDH15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2809448242188 2 522.279649 1042.54475 -0.12053 -6.2948E-05 0.64211 0.00033536 0.52159 0.00027241 522.2798767458386 126.73 0.77013 122.11 121.73 122.5 -4.6172 45 21 3 0 0 0 0.68128 1 24918 24918 16.942 0.37642 1 3638600 20811 12384 13603 13608 20678 20678 0.025174564432290936 IIDNRMAE 8 Unmodified _IIDNRMAE_ 0 0 0 REV__ENSG00000108599|ENST00000225737|AKAP10 REV__ENSG00000108599|ENST00000225737|AKAP10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2434997558594 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 63.899 1 60.901 60.401 61.401 -2.9975 0 0 0 0.22676 1 12353 12353 0.68139 0 1 + 20812 15133 13604 13609 20679 20679 -0.011950493596486922 IIDRHVSRY 9 Unmodified _IIDRHVSRY_ 0 0 0 ENST00000466409.1_1_9:95874378-95875386:+|nuORF;ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19 ENST00000466409.1_1_9:95874378-95875386:+|nuORF ENST00000466409.1_1_9:95874378-95875386:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7089538574219 3 386.884123 1157.63054 -0.084751 -3.2789E-05 0.068591 2.6537E-05 -0.01616 -6.2521E-06 386.8841080644194 22.911 0.48555 22.911 22.679 23.165 0 39 13 4 0 0 0 0.43219 1 3892 3892 23.79 15.345 1 7204000 20813 5611 13605 13610 20680 20680 0.058030413487585975 IIDRHVSRY 9 Unmodified _IIDRHVSRY_ 0 0 0 ENST00000466409.1_1_9:95874378-95875386:+|nuORF;ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19 ENST00000466409.1_1_9:95874378-95875386:+|nuORF ENST00000466409.1_1_9:95874378-95875386:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 386.884123 1157.63054 -0.85443 -0.00033056 0.11112 4.2992E-05 -0.7433 -0.00028757 386.88413277644764 24.85 0.44516 22.997 22.778 23.223 -1.8534 0.042954 2.2877E-05 NaN 23.79 40 12 4 NaN NaN NaN NaN 0 NaN NaN 0 6265000 20814 5611 13605 13610 0.058030413487585975 IIDSNSTILVE 11 Unmodified _IIDSNSTILVE_ 0 0 0 ENSG00000178814|ENST00000618853|OPLAH;OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant;OPLAH|p.H870Tfs*28|1|0.64|ENSG00000178814|chr8:144054639-144054639|G/-|frameshift_variant ENSG00000178814|ENST00000618853|OPLAH ENSG00000178814|ENST00000618853|OPLAH MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2754516601562 2 602.326993 1202.63943 NaN NaN NaN NaN NaN NaN NaN 151.64 1 146.89 146.39 147.39 -4.7523 0 0 0 0.22943 1 30130 30130 8.7454 0.83525 1 20815 6593 13606 13611 20681 20681 0.046219254038987856 IIDTDEAAA 9 Unmodified _IIDTDEAAA_ 0 0 0 ENST00000495703.5_1_1:45808500-45809371:+|nuORF;nc|ENSG00000132773|Q96GM8-2|TOE1;ENSG00000132773|ENST00000372090|TOE1 ENST00000495703.5_1_1:45808500-45809371:+|nuORF ENST00000495703.5_1_1:45808500-45809371:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2355041503906 2 459.724372 917.434192 0.39545 0.0001818 -0.17158 -7.8878E-05 0.22387 0.00010292 459.72419757848246 83.406 0.49982 83.406 83.149 83.649 0 18 13 2 0 0 0 0.37087 1 16290 16290 0.37959 0.3156 1 801250 20816 3762 13607 13612 20682 20682 -0.027828083356780553 IIECLHSF 8 Unmodified _IIECLHSF_ 0 0 0 ENST00000456675.2_1_10:22615378-22616584:+|nuORF;ENSG00000168283|ENST00000376663|BMI1 ENST00000456675.2_1_10:22615378-22616584:+|nuORF ENST00000456675.2_1_10:22615378-22616584:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25311279296875 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 123.75 1 119.17 118.67 119.67 -4.5757 0 0 0 0.21181 1 24395 24395 15.768 5.5848 1 20817 5893 13608 13613 20683 20683 -0.007929598659302428 IIELNWAP 8 Unmodified _IIELNWAP_ 0 0 0 REV__ENST00000591857.5_1_17:73953534-73975166:-|nuORF REV__ENST00000591857.5_1_17:73953534-73975166:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7439270019531 2 478.26601 954.517468 NaN NaN NaN NaN NaN NaN NaN 139.07 1 134.22 133.72 134.72 -4.8492 0 0 0 0.21181 1 26808 26808 15.768 4.9443 1 + 20818 12920 13609 13614 20684 20684 0.03838972902849491 IIELRLKPLRK 11 Unmodified _IIELRLKPLRK_ 0 0 0 REV__ENST00000538021.5_2_11:72004413-72018253:-|nuORF REV__ENST00000538021.5_2_11:72004413-72018253:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2292785644531 3 460.313406 1377.91839 NaN NaN NaN NaN NaN NaN NaN 96.576 1 92.341 91.841 92.841 -4.2348 0 0 0 0.23698 1 18440 18440 0.50596 0.41111 1 + 20819 17482 13610 13615 20685 20685 0.2445471688708949 IIENQVNEQ 9 Unmodified _IIENQVNEQ_ 0 0 0 REV__nc|ENSG00000082438|Q53SF7-3|COBLL1 REV__nc|ENSG00000082438|Q53SF7-3|COBLL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77734375 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 137.29 1 132.37 131.87 132.87 -4.9216 0 0 0 0.12123 1 26390 26390 34.402 7.5181 1 + 20820 23957 13611 13616 20686 20686 -0.004043566329528403 IIEQLYRF 8 Unmodified _IIEQLYRF_ 0 0 0 REV__ENSG00000187510|ENST00000344636|PLEKHG7 REV__ENSG00000187510|ENST00000344636|PLEKHG7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2598876953125 2 541.305667 1080.59678 0.31305 0.00016946 -0.26721 -0.00014464 0.045841 2.4814E-05 541.3054825155584 136.44 0.95828 131.61 131.09 132.05 -4.8307 65 26 3 0 0 0 0.36038 1 26211 26211 34.102 6.4736 1 6004100 + 20821 19090 13612 13617 20687 20687 0.05970619856975645 IIEQVENQN 9 Unmodified _IIEQVENQN_ 0 0 0 REV__nc|ENSG00000151917|Q5SZJ8-3|BEND6 REV__nc|ENSG00000151917|Q5SZJ8-3|BEND6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7742309570312 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 104.84 1 100.79 100.29 101.29 -4.0543 0 0 0 0.23508 1 20166 20166 9.3831 0.78985 1 + 20822 17089 13613 13618 20688 20688 -0.004043566329301029 IIFLGFILPF 10 Unmodified _IIFLGFILPF_ 0 0 0 REV__PRRG1|p.P123Lfs*30|1|0.21|ENSG00000130962|chrX:37453330-37453330|C/-|frameshift_variant REV__PRRG1|p.P123Lfs*30|1|0.21|ENSG00000130962|chrX:37453330-37453330|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2664794921875 2 590.362453 1178.71035 0.56153 0.00033151 -4.0663 -0.0024006 -3.5048 -0.0020691 590.3608089161274 149.48 0.20782 144.74 144.66 144.87 -4.7323 6 5 2 0 0 0 1.133 1 29704 29704 0.013265 0 1 1933300 + 20823 16045 13614 13619 20689 20689 0.12814714970022578 IIFQAPQL 8 Unmodified _IIFQAPQL_ 0 0 0 REV__ENST00000470928.3_1_1:167334720-167353117:+|nuORF REV__ENST00000470928.3_1_1:167334720-167353117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2592468261719 2 465.276378 928.538203 NaN NaN NaN NaN NaN NaN NaN 100.34 1 96.047 95.547 96.547 -4.297 0 0 0 0.20568 1 19191 19191 20.871 2.7362 1 + 20824 16704 13615 13620 20690 20690 0.07107563282522733 IIGDDSHSL 9 Unmodified _IIGDDSHSL_ 0 0 0 ENSG00000203722|ENST00000367360|RAET1G ENSG00000203722|ENST00000367360|RAET1G ENSG00000203722|ENST00000367360|RAET1G MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7228698730469 2 478.737814 955.461075 0.058721 2.8112E-05 -2.7919 -0.0013366 -2.7332 -0.0013085 478.736437912685 136.83 0.17358 131.9 131.81 131.98 -4.9215 6 4 2 0 0 0 0.70873 1 26296 26296 12.532 8.5872 1 1348100 20825 7541 13616 13621 20691 20691 -0.018436997244748454 IIGGFWLGV 9 Unmodified _IIGGFWLGV_ 0 0 0 nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1 nc|ENSG00000181830|Q96A29-2|SLC35C1 nc|ENSG00000181830|Q96A29-2|SLC35C1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78009033203125 2 481.278921 960.543289 0.20578 9.9036E-05 -0.87253 -0.00041993 -0.66676 -0.0003209 481.27845266105317 106.77 0.66539 106.77 106.43 107.1 0 29 18 2 0 0 0 0.19234 2 21007 21007;21010 28.173 6.6363 1 1959200 20826 6749 13617 13622 20692;20693 20692 0.06143867145146942 IIGKTVEEA 9 Unmodified _IIGKTVEEA_ 0 0 0 tr|U7T0F4|U7T0F4_FUSNUFeSclusterassemblyscaffoldproteinNifUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00796PE=3SV=1 tr|U7T0F4|U7T0F4_FUSNUFeSclusterassemblyscaffoldproteinNifUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00796PE=3SV=1 tr|U7T0F4|U7T0F4_FUSNUFeSclusterassemblyscaffoldproteinNifUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00796PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2540283203125 2 480.274032 958.533512 0.30562 0.00014678 -0.46082 -0.00022132 -0.1552 -7.4539E-05 480.2738036280205 100.21 0.79475 100.21 99.898 100.69 0 51 22 3 0 0 0 0.60805 1 19723 19723 12.532 3.9383 1 4689500 20827 26311 13618 13623 20694 20694 0.05258634349092972 IIGNLLIILTI 11 Unmodified _IIGNLLIILTI_ 0 0 0 OR7C2|p.I105Hfs*17|1|0.25|ENSG00000127529|chr19:14941791-14941792|-/T|frameshift_variant;ENSG00000127529|ENST00000248072|OR7C2 OR7C2|p.I105Hfs*17|1|0.25|ENSG00000127529|chr19:14941791-14941792|-/T|frameshift_variant OR7C2|p.I105Hfs*17|1|0.25|ENSG00000127529|chr19:14941791-14941792|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 399.2920837402344 3 399.272325 1194.79515 NaN NaN NaN NaN NaN NaN NaN 176.26 1 171.36 170.86 171.86 -4.9008 0 0 0 0.23698 1 35141 35141 0.08335 0 1 20828 3481 13619 13624 20695 20695 0.2055404071600151 IIGVFRKF 8 Unmodified _IIGVFRKF_ 0 0 0 ENSG00000107815|ENST00000311916|TWNK;ENST00000476766.5_1_10:102747125-102750779:+|nuORF;nc|ENSG00000107815|Q96RR1-2|TWNK ENSG00000107815|ENST00000311916|TWNK ENSG00000107815|ENST00000311916|TWNK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2667541503906 2 490.308013 978.601472 NaN NaN NaN NaN NaN NaN NaN 137.58 1 132.74 132.24 133.24 -4.84 0 0 0 0.21486 1 26508 26508 11.114 0 1 20829 2439 13620 13625 20696 20696 0.1113154879042213 IIHKDFPDR 9 Unmodified _IIHKDFPDR_ 0 0 0 tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1 tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1 tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.209228515625 3 380.876857 1139.60874 -2.247 -0.00085581 -1.0194 -0.00038828 -3.2664 -0.0012441 380.8764664982419 15.676 0.37999 14.323 14.166 14.546 -1.3534 23 10 4 0 0 0 0.60489 1 2207 2207 2.4985 0 1 3235900 20830 25900 13621 13626 20697 20697 0.0445223660017291 IIHNLNNEQ 9 Unmodified _IIHNLNNEQ_ 0 0 0 ENSG00000198786|ENST00000361567|MT-ND5 ENSG00000198786|ENST00000361567|MT-ND5 ENSG00000198786|ENST00000361567|MT-ND5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7809448242188 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 136.3 1 131.66 131.16 132.16 -4.6399 0 0 0 0.23508 1 26894 26894 11.64 3.047 1 20831 7493 13622 13627 20698 20698 0.008587693237814165 IIHRAGKKY 9 Unmodified _IIHRAGKKY_ 0 0 0 MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant;ENSG00000086015|ENST00000361297|MAST2 MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7696533203125 2 543.33255 1084.65055 NaN NaN NaN NaN NaN NaN NaN 26.905 1 25.27 24.77 25.77 -1.6347 0 0 0 0.23411 1 4478 4478 13.508 0.97634 1 20832 1689 13623 13628 20699 20699 0.11160837079364683 IIIERKNVIY 10 Unmodified _IIIERKNVIY_ 0 0 0 tr|U7SWT4|U7SWT4_FUSNUHADhydrolase,familyIBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01166PE=4SV=1 tr|U7SWT4|U7SWT4_FUSNUHADhydrolase,familyIBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01166PE=4SV=1 tr|U7SWT4|U7SWT4_FUSNUHADhydrolase,familyIBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01166PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.76806640625 2 630.887355 1259.76016 NaN NaN NaN NaN NaN NaN NaN 132.39 1 127.59 127.09 128.09 -4.799 0 0 0 0.22544 1 25485 25485 19.257 1.1106 1 20833 26257 13624 13629 20700 20700 0.1406679790804901 IIILALSKSRM 11 Unmodified _IIILALSKSRM_ 0 0 0 REV__CON__Q2TBQ1 REV__CON__Q2TBQ1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.780517578125 2 622.891583 1243.76861 NaN NaN NaN NaN NaN NaN NaN 80.155 1 76.35 75.85 76.85 -3.8048 0 0 0 0.23429 1 15209 15209 4.897 0.95262 1 + + 20834 13540 13625 13630 20701 20701 0.15648028553005133 IIIPRVLAAT 10 Unmodified _IIIPRVLAAT_ 0 0 0 ENST00000521738.1_1_5:158701561-158702278:+|nuORF;ENST00000519276.1_1_5:158701561-158711936:+|nuORF ENST00000521738.1_1_5:158701561-158702278:+|nuORF ENST00000521738.1_1_5:158701561-158702278:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2642822265625 2 533.852784 1065.69102 0.43596 0.00023274 3.6695 0.001959 4.1055 0.0021917 533.8559128949884 153.18 0.10843 147.96 147.89 148 -5.2209 4 2 2 0 0 0 0.871 1 29691 29691 6.2058 2.6093 1 399260 20835 10817 13626 13631 20702 20702 0.1607975867912046 IIKGRKKIS 9 Unmodified _IIKGRKKIS_ 0 0 0 ENST00000497669.1_1_1:223437887-223438046:-|nuORF ENST00000497669.1_1_1:223437887-223438046:-|nuORF ENST00000497669.1_1_1:223437887-223438046:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27734375 2 521.858401 1041.70225 -0.23105 -0.00012058 -0.81781 -0.00042678 -1.0489 -0.00054736 521.8600061875037 118.79 0.10533 114.18 114.11 114.21 -4.6106 4 2 2 0 0 0 0.87888 1 22795 22795 4.756 2.6963 1 455880 20836 10593 13627 13632 20703 20703 0.18306580773264614 IIKLKLKPK 9 Unmodified _IIKLKLKPK_ 0 0 0 REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C;REV__ENST00000415664.2_21:10987833-11013471:-|nuORF REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2655029296875 2 540.896995 1079.77944 0.20676 0.00011184 3.0873 0.0016699 3.2941 0.0017817 541.3985546423938 93.56 0.20375 89.57 89.487 89.691 -3.9907 6 5 2 0 0 0 0.88278 1 18325 18325 0 0 1 970620 + 20837 23940;21457 13628 13633 20704 20704 0.24273798989588613 IIKSYEGRT 9 Unmodified _IIKSYEGRT_ 0 0 0 REV__tr|U7SHA6|U7SHA6_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02242PE=4SV=1 REV__tr|U7SHA6|U7SHA6_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02242PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2720336914062 2 533.798206 1065.58186 -0.42838 -0.00022867 0.68373 0.00036497 0.25535 0.0001363 533.7983465700953 108.52 0.37881 104.2 103.9 104.28 -4.32 17 10 2 0 0 0 0.74858 1 21349 21349 12.241 3.4953 1 1205400 + 20838 24884 13629 13634 20705 20705 0.051691279890064834 IIKVAKLIALY 11 Unmodified _IIKVAKLIALY_ 0 0 0 REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.763671875 2 622.920667 1243.82678 NaN NaN NaN NaN NaN NaN NaN 131.05 1 126.42 125.92 126.92 -4.6359 0 0 0 0.22632 1 25827 25827 0.026206 0 1 + 20839 13133 13630 13635 20706 20706 0.21462033469947528 IIKVAKLIALY 11 Unmodified _IIKVAKLIALY_ 0 0 0 REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.75732421875 2 622.920667 1243.82678 NaN NaN NaN NaN NaN NaN NaN 83.253 1 79.555 79.055 80.055 -3.6985 0 0 0 0.23698 1 15890 15890 0.35063 0.35063 1 + 20840 13133 13630 13635 20707 20707 0.21462033469947528 IIKVEEKTK 9 Unmodified _IIKVEEKTK_ 0 0 0 REV__nc|ENSG00000153093|Q9NUZ1-2|ACOXL REV__nc|ENSG00000153093|Q9NUZ1-2|ACOXL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7697143554688 2 544.339707 1086.66486 1.3407 0.00072977 -1.4329 -0.00078 -0.092275 -5.0229E-05 544.3389403838521 26.217 0.40775 24.435 24.213 24.62 -1.7821 18 11 2 0 0 0 0.82765 1 4609 4609 9.3831 1.473 1 755200 + 20841 17134 13631 13636 20708 20708 0.12499444716991093 IIKVEEKTK 9 Unmodified _IIKVEEKTK_ 0 0 0 REV__nc|ENSG00000153093|Q9NUZ1-2|ACOXL REV__nc|ENSG00000153093|Q9NUZ1-2|ACOXL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7696533203125 2 544.339707 1086.66486 0.1369 7.452E-05 -0.023582 -1.2837E-05 0.11332 6.1683E-05 544.3396508979364 26.052 0.75951 24.418 23.96 24.719 -1.6347 24 21 2 0 0 0 0.82765 1 4308 4308 9.3831 2.0939 1 493960 + 20842 17134 13631 13636 20709 20709 0.12499444716991093 IILFFRGVT 9 Unmodified _IILFFRGVT_ 0 0 0 SLC6A1|p.K531Qfs*55|1|0.2|ENSG00000157103|chr3:11034589-11034590|-/C|frameshift_variant;ENSG00000157103|ENST00000287766|SLC6A1 SLC6A1|p.K531Qfs*55|1|0.2|ENSG00000157103|chr3:11034589-11034590|-/C|frameshift_variant SLC6A1|p.K531Qfs*55|1|0.2|ENSG00000157103|chr3:11034589-11034590|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2862548828125 2 533.326402 1064.63825 NaN NaN NaN NaN NaN NaN NaN 134.79 1 129.97 129.47 130.47 -4.8175 0 0 0 0.23508 1 25950 25950 11.64 0.81637 1 20843 5116 13632 13637 20710 20710 0.10851800616342189 IILFISRNRQ 10 Unmodified _IILFISRNRQ_ 0 0 0 ENSG00000122140|ENST00000241600|MRPS2 ENSG00000122140|ENST00000241600|MRPS2 ENSG00000122140|ENST00000241600|MRPS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7503051757812 2 630.382771 1258.75099 0.93149 0.0005872 4.06 0.0025593 4.9915 0.0031465 630.8876510730827 132.08 0.35004 127.44 127.34 127.69 -4.6399 13 9 3 0 0 0 0.71097 1 26020 26020 10.074 3.8681 1 2326100 20844 3212 13633 13638 20711 20711 0.13196449342353844 IILILAILSKY 11 Unmodified _IILILAILSKY_ 0 0 0 nc|ENSG00000164073|Q8NHS3-2|MFSD8 nc|ENSG00000164073|Q8NHS3-2|MFSD8 nc|ENSG00000164073|Q8NHS3-2|MFSD8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7781982421875 2 630.4205 1258.82645 0.38729 0.00024415 1.5903 0.0010025 1.9776 0.0012467 630.9230701812642 112.68 0.2019 112.68 112.63 112.83 0 6 5 2 0 0 0 0.96156 1 22178 22178 0.35063 0.35063 1 2037600 20845 12422 13634 13639 20712 20712 0.20738613750086188 IILILQIQK 9 Unmodified _IILILQIQK_ 0 0 0 REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2785034179688 2 541.37081 1080.72707 0.34266 0.0001855 2.6087 0.0014123 2.9514 0.0015978 541.3730220813815 153.04 0.2155 148.27 148.15 148.37 -4.7684 8 5 3 0 0 0 0.65319 1 30428 30428 0.073264 0.073264 1 1495200 + 20846 22880 13635 13640 20713 20713 0.18993215855971357 IILILQIQKY 10 Unmodified _IILILQIQKY_ 0 0 0 REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7525024414062 2 622.902474 1243.7904 NaN NaN NaN NaN NaN NaN NaN 125.75 1 121.15 120.65 121.65 -4.5984 0 0 0 0.22588 1 24792 24792 4.3292 0 1 + 20847 22880 13636 13641 20714 20714 0.17825156573212553 IILILQIQKY 10 Unmodified _IILILQIQKY_ 0 0 0 REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7681884765625 2 622.902474 1243.7904 NaN NaN NaN NaN NaN NaN NaN 125.45 1 120.8 120.3 121.3 -4.6495 0 0 0 2.8426 1 24136 24136 0.043787 0 1 + 20848 22880 13636 13641 20715 20715 0.17825156573212553 IILIWVFMII 10 Unmodified _IILIWVFMII_ 0 0 0 tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1 tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1 tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7688598632812 2 630.893063 1259.77157 NaN NaN NaN NaN NaN NaN NaN 168.86 1 163.99 163.49 164.49 -4.873 0 0 0 2.8426 1 33324 33324 0.013265 0 1 20849 26136 13637 13642 20716 20716 0.152079036778332 IILQLYPWKYI 11 Unmodified _IILQLYPWKYI_ 0 0 0 ASNSD1|p.G329Afs*17|1|0.2|ENSG00000138381|chr2:189667114-189667114|G/-|frameshift_variant;ASNSD1|p.S327Lfs*19|1|0.36|ENSG00000138381|chr2:189667108-189667108|T/-|frameshift_variant;ENSG00000138381|ENST00000260952|ASNSD1 ASNSD1|p.G329Afs*17|1|0.2|ENSG00000138381|chr2:189667114-189667114|G/-|frameshift_variant ASNSD1|p.G329Afs*17|1|0.2|ENSG00000138381|chr2:189667114-189667114|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 484.2645263671875 3 483.954996 1448.84316 NaN NaN NaN NaN NaN NaN NaN 158.54 1 153.26 152.76 153.76 -5.2748 0 0 0 0.22632 1 30770 30770 1.4551 1.4492 1 20850 236 13638 13643 20717 20717 0.13669114636036284 IILTTTPIF 9 Unmodified _IILTTTPIF_ 0 0 0 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 340.2118835449219 3 340.210954 1017.61103 NaN NaN NaN NaN NaN NaN NaN 62.117 1 59.156 58.656 59.656 -2.9614 0 0 0 0.23508 1 11982 11982 2.9952 1.151 1 + 20851 18062 13639 13644 20718 20718 0.10293272285298372 IILTTTPIF 9 Unmodified _IILTTTPIF_ 0 0 0 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 340.1755676269531 3 340.210954 1017.61103 NaN NaN NaN NaN NaN NaN NaN 71.678 1 68.051 67.551 68.551 -3.6275 0 0 0 0.1964 1 13524 13524 0.0033805 0 1 + 20852 18062 13639 13644 20719 20719 0.10293272285298372 IIMSSKVCY 9 Unmodified _IIMSSKVCY_ 0 0 0 ENSG00000188324|ENST00000358433|OR6C6 ENSG00000188324|ENST00000358433|OR6C6 ENSG00000188324|ENST00000358433|OR6C6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2684936523438 2 522.266838 1042.51912 NaN NaN NaN NaN NaN NaN NaN 24.35 1 22.497 21.997 22.997 -1.8534 0 0 0 0.19512 1 3955 3955 14.957 11.37 1 20853 7162 13640 13645 20720 20720 -0.00043477395047375467 IINDMRDLP 9 Unmodified _IINDMRDLP_ 0 0 0 nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-13|TAF1;ENSG00000122728|ENST00000242310|TAF1L;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1;TAF1|p.L1451Cfs*4|1|0.04|ENSG00000147133|chrX:71408121-71408125|CTAAT/-|frameshift_variant nc|ENSG00000147133|P21675-25|TAF1 nc|ENSG00000147133|P21675-25|TAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7932739257812 2 543.784241 1085.55393 0.74768 0.00040658 -1.4756 -0.00080242 -0.72794 -0.00039584 543.7835739386302 102.22 1.5705 102.22 101.33 102.9 0 122 44 4 0 0 0 0.58804 1 19977 19977 13.906 0 1 22701000 20854 3240 13641 13646 20721 20721 0.014574817372704274 IINDMRDLP 9 Unmodified _IINDMRDLP_ 0 0 0 nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-13|TAF1;ENSG00000122728|ENST00000242310|TAF1L;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1;TAF1|p.L1451Cfs*4|1|0.04|ENSG00000147133|chrX:71408121-71408125|CTAAT/-|frameshift_variant nc|ENSG00000147133|P21675-25|TAF1 nc|ENSG00000147133|P21675-25|TAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7817993164062 2 543.784241 1085.55393 -0.13059 -7.1011E-05 -0.29996 -0.00016311 -0.43054 -0.00023412 543.7842463197084 106.34 1.6071 102.08 101.13 102.74 -4.2638 157 45 5 0 0 0 0.5059 1 20820 20820 19.257 0 1 34361000 20855 3240 13641 13646 20722 20722 0.014574817372704274 IINLHATWIA 10 Unmodified _IINLHATWIA_ 0 0 0 REV__RNF148|p.T45I|1|0.05|ENSG00000235631|chr7:122702617-122702617|G/A|missense_variant REV__RNF148|p.T45I|1|0.05|ENSG00000235631|chr7:122702617-122702617|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3336791992188 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 105.61 1 101.35 100.85 101.85 -4.2638 0 0 0 0.22588 1 20785 20785 11.64 2.2572 1 + 20856 24569 13642 13647 20723 20723 0.08057997639662062 IINRQNSL 8 Unmodified _IINRQNSL_ 0 0 0 REV__ENST00000563542.5_1_15:72302757-72313320:-|nuORF REV__ENST00000563542.5_1_15:72302757-72313320:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7439270019531 2 479.277441 956.540328 0.23964 0.00011485 -1.5624 -0.00074881 -1.3227 -0.00063396 479.27712296215424 139.28 1.1922 134.43 134.11 135.3 -4.8492 43 33 2 0 0 0 0.99494 1 26808 26808 8.5933 0.68312 1 2069800 + 20857 23080 13643 13648 20724 20724 0.06031992020314192 IINVIKLVW 9 Unmodified _IINVIKLVW_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 549.2024536132812 2 549.357702 1096.70085 NaN NaN NaN NaN NaN NaN NaN 166.38 1 161.59 161.09 162.09 -4.7898 0 0 0 0.23508 1 33417 33417 7.9102 1.187 1 20858 2900 13644 13649 20725 20725 0.15636946684503528 IINWNSFWWWL 11 Unmodified _IINWNSFWWWL_ 0 0 0 REV__ENST00000497011.5_1_3:165548351-165548405:-|nuORF REV__ENST00000497011.5_1_3:165548351-165548405:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.263671875 3 522.262712 1563.76631 NaN NaN NaN NaN NaN NaN NaN 164.76 1 164.76 164.26 165.26 0 0 0 0 0.22632 1 33356 33356 0.026206 0 1 + 20859 22397 13645 13650 20726 20726 0.006973161395535499 IINWNSFWWWL 11 Unmodified _IINWNSFWWWL_ 0 0 0 REV__ENST00000497011.5_1_3:165548351-165548405:-|nuORF REV__ENST00000497011.5_1_3:165548351-165548405:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.269775390625 3 522.262712 1563.76631 NaN NaN NaN NaN NaN NaN NaN 118.55 1 114.05 113.55 114.55 -4.502 0 0 0 0.22632 1 23377 23377 0.026206 0.025642 1 + 20860 22397 13645 13650 20727 20727 0.006973161395535499 IINWNSFWWWL 11 Unmodified _IINWNSFWWWL_ 0 0 0 REV__ENST00000497011.5_1_3:165548351-165548405:-|nuORF REV__ENST00000497011.5_1_3:165548351-165548405:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2618408203125 3 522.262712 1563.76631 NaN NaN NaN NaN NaN NaN NaN 164.46 1 159.41 158.91 159.91 -5.0446 0 0 0 0.22632 1 32072 32072 0.026206 0 1 + 20861 22397 13645 13650 20728 20728 0.006973161395535499 IINYKTNID 9 Unmodified _IINYKTNID_ 0 0 0 ENSG00000248746|ENST00000513398|ACTN3 ENSG00000248746|ENST00000513398|ACTN3 ENSG00000248746|ENST00000513398|ACTN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7672119140625 2 547.298039 1092.58152 0.29034 0.0001589 -2.15 -0.0011767 -1.8596 -0.0010178 547.2968459672776 72.585 0.48254 72.585 72.301 72.783 0 23 13 3 0 0 0 0.47479 1 14052 14052 37.974 1.9298 1 2286600 20862 7894 13646 13651 20729 20729 0.038937082691290925 IIPAGRFKT 9 Unmodified _IIPAGRFKT_ 0 0 0 REV__nc|ENSG00000132394|P57772-2|EEFSEC REV__nc|ENSG00000132394|P57772-2|EEFSEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 501.73468017578125 2 501.808377 1001.6022 -0.047477 -2.3824E-05 0.49855 0.00025018 0.45107 0.00022635 501.8085734028178 84.356 2.8059 80.692 80.059 82.864 -3.6641 216 79 4 0 0 0 0.52768 1 16811 16811 7.4771 3.89 1 90383000 + 20863 16114 13647 13652 20730 20730 0.10146343439453176 IIPAGRFKT 9 Unmodified _IIPAGRFKT_ 0 0 0 REV__nc|ENSG00000132394|P57772-2|EEFSEC REV__nc|ENSG00000132394|P57772-2|EEFSEC MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 501.808377 1001.6022 0.54493 0.00027345 -0.076307 -3.8291E-05 0.46862 0.00023516 501.80827812654604 80.811 2.7643 80.811 80.075 82.839 0 0.047389 -0.00044571 NaN 7.4771 178 78 3 NaN NaN NaN NaN 0 NaN NaN 0 57575000 + 20864 16114 13647 13652 0.10146343439453176 IIPAGRFKT 9 Unmodified _IIPAGRFKT_ 0 0 0 REV__nc|ENSG00000132394|P57772-2|EEFSEC REV__nc|ENSG00000132394|P57772-2|EEFSEC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 501.808377 1001.6022 -0.021573 -1.0825E-05 0.43832 0.00021995 0.41675 0.00020913 501.80854711686095 84.642 3.1324 80.733 80.041 83.174 -3.9093 -0.03111 7.0786E-05 NaN 7.4771 219 89 3 NaN NaN NaN NaN 0 NaN NaN 0 80907000 + 20865 16114 13647 13652 0.10146343439453176 IIPAGRFKT 9 Unmodified _IIPAGRFKT_ 0 0 0 REV__nc|ENSG00000132394|P57772-2|EEFSEC REV__nc|ENSG00000132394|P57772-2|EEFSEC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 501.808377 1001.6022 -0.14414 -7.2332E-05 0.62759 0.00031493 0.48345 0.0002426 501.80864741995003 84.531 2.8978 80.819 80.097 82.994 -3.7117 0.055859 0.00026074 NaN 7.4771 199 82 3 NaN NaN NaN NaN 0 NaN NaN 0 69622000 + 20866 16114 13647 13652 0.10146343439453176 IIPDLRRDP 9 Unmodified _IIPDLRRDP_ 0 0 0 REV__ENSG00000153339|ENST00000283351|TRAPPC8 REV__ENSG00000153339|ENST00000283351|TRAPPC8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7669677734375 2 547.819473 1093.62439 NaN NaN NaN NaN NaN NaN NaN 116.07 1 111.71 111.21 112.21 -4.3585 0 0 0 0.23508 1 22346 22346 10.074 0.72649 1 + 20867 17146 13648 13653 20731 20731 0.0813252311722863 IIPHSGSIEKA 11 Unmodified _IIPHSGSIEKA_ 0 0 0 ZNF830|p.F251Lfs*6|1|0.36|ENSG00000198783|chr17:34962313-34962313|T/-|frameshift_variant;ENSG00000198783|ENST00000361952|ZNF830 ZNF830|p.F251Lfs*6|1|0.36|ENSG00000198783|chr17:34962313-34962313|T/-|frameshift_variant ZNF830|p.F251Lfs*6|1|0.36|ENSG00000198783|chr17:34962313-34962313|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3318481445312 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 147.83 1 142.67 142.17 143.17 -5.1557 0 0 0 0.22683 1 28610 28610 10.8 0.64894 1 20868 7491 13649 13654 20732 20732 0.06533086051808823 IIQAGFLSL 9 Unmodified _IIQAGFLSL_ 0 0 0 nc|ENSG00000130948|P37058-2|HSD17B3 nc|ENSG00000130948|P37058-2|HSD17B3 nc|ENSG00000130948|P37058-2|HSD17B3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2520751953125 2 481.289485 960.564418 0.085392 4.1098E-05 -0.13914 -6.6966E-05 -0.053747 -2.5868E-05 481.2894685775316 135.51 0.70528 130.62 130.29 131 -4.8951 50 19 3 0 0 0 0.44262 1 26102 26102 23.148 2.2772 1 13998000 20869 12322 13650 13655 20733 20733 0.08255832453994572 IIQQHLDYG 9 Unmodified _IIQQHLDYG_ 0 0 0 DNAH9|p.R2565Q|2|0.33|ENSG00000007174|chr17:11781150-11781150|G/A|missense_variant DNAH9|p.R2565Q|2|0.33|ENSG00000007174|chr17:11781150-11781150|G/A|missense_variant DNAH9|p.R2565Q|2|0.33|ENSG00000007174|chr17:11781150-11781150|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77978515625 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 161.93 1 156.79 156.29 157.29 -5.1438 0 0 0 0.23508 1 31450 31450 11.64 2.8949 1 20870 868 13651 13656 20734 20734 0.01120554954900399 IIRYELYMRRL 11 Unmodified _IIRYELYMRRL_ 0 0 0 USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;nc|ENSG00000042781|O75445-2|USH2A;USH2A|p.F1618Lfs*17|1|0.36|ENSG00000042781|chr1:216089044-216089044|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 509.2943420410156 3 509.293906 1524.85989 NaN NaN NaN NaN NaN NaN NaN 154.76 1 154.76 154.26 155.26 0 0 0 0 0.22632 1 31019 31019 0.026206 0 1 20871 1204 13652 13657 20735 20735 0.11845292250313832 IIRYYRRYKVK 11 Unmodified _IIRYYRRYKVK_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D;ENST00000585094.1_1_17:30986131-31048108:-|nuORF ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 520.140625 3 519.98406 1556.93035 NaN NaN NaN NaN NaN NaN NaN 163.54 1 163.54 163.04 164.04 0 0 0 0 0.23698 1 32974 32974 0 0 1 20872 6479 13653 13658 20736 20736 0.1741633363026267 IISNLNKYI 9 Unmodified _IISNLNKYI_ 0 0 0 tr|U7SK88|U7SK88_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02141PE=4SV=1 tr|U7SK88|U7SK88_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02141PE=4SV=1 tr|U7SK88|U7SK88_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02141PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.21563720703125 3 359.881608 1076.623 0.13852 4.9851E-05 -0.011302 -4.0675E-06 0.12722 4.5784E-05 359.8815567391823 95.684 0.58128 91.493 91.173 91.754 -4.1911 30 16 2 0 0 0 0.63326 1 18294 18294 10.8 3.6978 1 3301800 20873 25956 13654 13659 20737 20737 0.08774889028450161 IISNLNKYI 9 Unmodified _IISNLNKYI_ 0 0 0 tr|U7SK88|U7SK88_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02141PE=4SV=1 tr|U7SK88|U7SK88_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02141PE=4SV=1 tr|U7SK88|U7SK88_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02141PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.216064453125 3 359.881608 1076.623 -0.69014 -0.00024837 0.87095 0.00031344 0.1808 6.5067E-05 359.8818308289869 95.385 0.79813 91.504 91.09 91.888 -3.881 48 22 3 0 0 0 0.63326 1 18341 18341 10.8 3.6978 1 3604200 20874 25956 13654 13659 20738 20738 0.08774889028450161 IISQLDPV 8 Unmodified _IISQLDPV_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 443.2507019042969 2 442.758018 883.501483 0.48535 0.00021489 -0.29279 -0.00012963 0.19256 8.5258E-05 442.7577784475348 103.36 0.81107 99.308 98.924 99.735 -4.0543 37 22 2 0 0 0 8448 1 19821 19821 3.5871 2.9057 1 1325900 20875 3956 13655 13660 20739 20739 0.05507266665949828 IISRFMYN 8 Unmodified _IISRFMYN_ 0 0 0 nc|ENSG00000147127|Q5JT25-2|RAB41;ENSG00000147127|ENST00000374473|RAB41 nc|ENSG00000147127|Q5JT25-2|RAB41 nc|ENSG00000147127|Q5JT25-2|RAB41 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2676391601562 2 522.27077 1042.52699 NaN NaN NaN NaN NaN NaN NaN 121.63 1 121.63 121.13 122.13 0 0 0 0 0.21486 1 23975 23975 10.183 2.8942 1 20876 4684 13656 13661 20740 20740 0.007424179167401235 IISYIEVLE 9 Unmodified _IISYIEVLE_ 0 0 0 tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1 tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1 tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20684814453125 3 360.205869 1077.59578 NaN NaN NaN NaN NaN NaN NaN 111.23 1 106.74 106.24 107.24 -4.4915 0 0 0 0.19657 1 21350 21350 0.073264 0.069883 1 20877 26510 13657 13662 20741 20741 0.060083606974330905 IISYIEVLE 9 Unmodified _IISYIEVLE_ 0 0 0 tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1 tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1 tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2067565917969 3 360.205869 1077.59578 NaN NaN NaN NaN NaN NaN NaN 109.9 1 105.72 105.22 106.22 -4.1826 0 0 0 0.23508 1 21149 21149 2.4985 0.84587 1 20878 26510 13657 13662 20742 20742 0.060083606974330905 IITDSGYF 8 Unmodified _IITDSGYF_ 0 0 0 REV__ENST00000497888.1_1_2:128260300-128262356:-|nuORF REV__ENST00000497888.1_1_2:128260300-128262356:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2236022949219 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 40.779 1 38.144 37.644 38.644 -2.6348 0 0 0 0.20378 1 7607 7607 22.453 0.91566 1 + 20879 22405 13658 13663 20743 20743 -0.022092991220915792 IITSIQNNY 9 Unmodified _IITSIQNNY_ 0 0 0 ENST00000417723.1_1_3:11874583-11886385:-|nuORF;ENST00000494388.1_1_3:11885478-11888134:-|nuORF;nc|ENSG00000144559|Q96BW9-2|TAMM41;ENSG00000144559|ENST00000455809|TAMM41;nc|ENSG00000144559|Q96BW9|TAMM41 ENST00000417723.1_1_3:11874583-11886385:-|nuORF ENST00000417723.1_1_3:11874583-11886385:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2802734375 2 533.282389 1064.55022 0.7283 0.00038839 -0.59581 -0.00031774 0.13248 7.065E-05 533.2820797917628 90.257 1.4822 86.213 85.519 87.001 -4.0443 117 41 4 0 0 0 0.44856 1 17087 17087 0.87518 0.19379 1 10278000 20880 4559 13659 13664 20744 20744 0.020531352350417365 IITYFLHH 8 Unmodified _IITYFLHH_ 0 0 0 ENST00000503503.5_1_4:41035284-41102684:-|nuORF;ENST00000295974.12_1_4:41035287-41102691:-|nuORF ENST00000503503.5_1_4:41035284-41102684:-|nuORF ENST00000503503.5_1_4:41035284-41102684:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2796020507812 2 522.287277 1042.56 NaN NaN NaN NaN NaN NaN NaN 84.333 1 80.423 79.923 80.923 -3.9093 0 0 0 0.21486 1 16028 16028 5.7604 0.46354 1 20881 8500 13660 13665 20745 20745 0.04042368031082333 IIVAPHVKKRL 11 Unmodified _IIVAPHVKKRL_ 0 0 0 REV__ENST00000453977.2_1_X:24700103-24700596:+|nuORF REV__ENST00000453977.2_1_X:24700103-24700596:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2543029785156 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 148.37 1 143.66 143.16 144.16 -4.7095 0 0 0 0.23698 1 29461 29461 0.50596 0 1 + 20882 21835 13661 13666 20746 20746 0.21390489652844735 IIVAPHVKKRL 11 Unmodified _IIVAPHVKKRL_ 0 0 0 REV__ENST00000453977.2_1_X:24700103-24700596:+|nuORF REV__ENST00000453977.2_1_X:24700103-24700596:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2528076171875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 177.29 1 172.39 171.89 172.89 -4.9008 0 0 0 0.23698 1 35356 35356 0.094841 0.094841 1 + 20883 21835 13661 13666 20747 20747 0.21390489652844735 IIVASQAMRY 10 Unmodified _IIVASQAMRY_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.L1167Sfs*9|1|0.07|ENSG00000077235|chr16:27488566-27488566|G/-|frameshift_variant;GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant;GTF3C1|p.V2028Sfs*25|1|0.14|ENSG00000077235|chr16:27462329-27462329|C/-|frameshift_variant;GTF3C1|p.D168Ifs*4|1|0.5|ENSG00000077235|chr16:27538286-27538286|C/-|frameshift_variant;GTF3C1|p.S767Vfs*7|3|0.31|ENSG00000077235|chr16:27497688-27497688|T/-|frameshift_variant nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.337646484375 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 88.659 1 84.867 84.367 85.367 -3.7926 0 0 0 0.22588 1 17346 17346 7.2892 1.0834 1 20884 1555 13662 13667 20748 20748 0.047580475252971155 IIVKNTVDY 9 Unmodified _IIVKNTVDY_ 0 0 0 REV__tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1 REV__tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2757568359375 2 532.802957 1063.59136 0.087333 4.6531E-05 -0.28628 -0.00015253 -0.19895 -0.000106 532.802797161193 120.8 0.82812 120.8 120.39 121.22 0 50 22 3 0 0 0 0.44856 1 23738 23738 0.40827 0 1 5525200 + 20885 25146 13663 13668 20749 20749 0.062108962745242025 IIVVLSGVY 9 Unmodified _IIVVLSGVY_ 0 0 0 REV__ENSG00000101464|ENST00000217446|PIGU REV__ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77886962890625 2 481.799686 961.584819 0.2062 9.9347E-05 0.11872 5.7202E-05 0.32493 0.00015655 481.7996719853407 64.284 0.49467 61.027 60.813 61.308 -3.2567 19 13 2 0 0 0 0.42933 2 12084 12084;12085 18.135 4.6271 1 1028200 + 20886 14791 13664 13669 20750;20751 20750 0.1024900311381316 IIWHQALY 8 Unmodified _IIWHQALY_ 0 0 0 REV__ZNF766|p.R319I|1|0.32|ENSG00000196214|chr19:52290747-52290747|G/T|missense_variant REV__ZNF766|p.R319I|1|0.32|ENSG00000196214|chr19:52290747-52290747|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2615966796875 2 522.287277 1042.56 NaN NaN NaN NaN NaN NaN NaN 132.13 1 127.49 126.99 127.99 -4.6399 0 0 0 0.21486 1 26042 26042 11.114 1.767 1 + 20887 25592 13665 13670 20752 20752 0.04042368031082333 IIWKPVRL 8 Unmodified _IIWKPVRL_ 0 0 0 REV__ENST00000559084.1_1_14:24760067-24760244:-|nuORF REV__ENST00000559084.1_1_14:24760067-24760244:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.22802734375 3 342.22705 1023.65932 NaN NaN NaN NaN NaN NaN NaN 120.7 1 116.24 115.74 116.74 -4.467 0 0 0 0.23584 1 23240 23240 0.063987 0.060607 1 + 20888 17295 13666 13671 20753 20753 0.14843810715831296 IIYIIFFVIFF 11 Unmodified _IIYIIFFVIFF_ 0 0 0 REV__ENST00000318430.9_1_17:76134666-76137438:+|nuORF REV__ENST00000318430.9_1_17:76134666-76137438:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7423095703125 3 478.952704 1433.83628 NaN NaN NaN NaN NaN NaN NaN 90.057 1 90.057 89.557 90.557 0 0 0 0 0.2366 1 17592 17592 3.0723 1.1659 1 + 20889 20536 13667 13672 20754 20754 0.13671801755435808 IIYVEGKEI 9 Unmodified _IIYVEGKEI_ 0 0 0 tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1 tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1 tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.285888671875 2 532.305332 1062.59611 0.69348 0.00036914 -0.79885 -0.00042523 -0.10538 -5.6092E-05 532.3049105007311 116.59 0.73739 112.01 111.7 112.43 -4.5815 56 20 3 0 0 0 0.17935 1 22345 22345 39.95 3.4435 1 8419500 20890 25964 13668 13673 20755 20755 0.0673178041729443 IIYVEGKEI 9 Unmodified _IIYVEGKEI_ 0 0 0 tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1 tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1 tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.305332 1062.59611 0.5364 0.00028553 -0.68173 -0.00036289 -0.14533 -7.7362E-05 532.3049691958911 116.43 0.88484 112.07 111.67 112.55 -4.3585 0.029658 6.2509E-05 NaN 39.95 70 24 4 NaN NaN NaN NaN 0 NaN NaN 0 9931200 20891 25964 13668 13673 0.0673178041729443 IKAAFVFVL 9 Unmodified _IKAAFVFVL_ 0 0 0 REV__ENST00000552056.5_1_12:76441358-76444342:-|nuORF REV__ENST00000552056.5_1_12:76441358-76444342:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.548095703125 3 336.547789 1006.62154 NaN NaN NaN NaN NaN NaN NaN 179.81 1 174.89 174.39 175.39 -4.9114 0 0 0 0.19624 1 35881 35881 0.073264 0 1 + 20892 22942 13669 13674 20756 20756 0.11849299730374696 IKAGGDILPPE 11 Unmodified _IKAGGDILPPE_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 554.917236328125 2 555.313689 1108.61282 NaN NaN NaN NaN NaN NaN NaN 171.42 1 166.55 166.05 167.05 -4.873 0 0 0 0.22765 1 33973 33973 10.151 0.076642 1 + 20893 17221 13670 13675 20757 20757 0.06286281303255237 IKAVSLLY 8 Unmodified _IKAVSLLY_ 0 0 0 REV__ENST00000551270.1_1_12:104237536-104277386:-|nuORF REV__ENST00000551270.1_1_12:104237536-104277386:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7503356933594 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 40.783 1 38.294 37.794 38.794 -2.4896 0 0 0 0.21486 1 7308 7308 2.5775 0 1 + 20894 22933 13671 13676 20758 20758 0.10204733942339317 IKDDQGRF 8 Unmodified _IKDDQGRF_ 0 0 0 REV__ENSG00000103966|ENST00000220325|EHD4 REV__ENSG00000103966|ENST00000220325|EHD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2534484863281 2 489.753798 977.493044 0.15685 7.682E-05 -1.1303 -0.00055358 -0.97347 -0.00047676 489.75314827108474 52.475 0.66264 49.387 49.099 49.761 -3.0876 26 18 2 0 0 0 0.96386 1 9603 9603 10.074 1.3285 1 1484700 + 20895 14900 13672 13677 20759 20759 0.003397127493371954 IKDLRKRLAQY 11 Unmodified _IKDLRKRLAQY_ 0 0 0 ENST00000469874.5_1_3:45867808-45883491:-|nuORF;nc|ENSG00000163818|Q9NQ48-2|LZTFL1;ENSG00000163818|ENST00000296135|LZTFL1 ENST00000469874.5_1_3:45867808-45883491:-|nuORF ENST00000469874.5_1_3:45867808-45883491:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 702.4765014648438 2 702.42771 1402.84087 NaN NaN NaN NaN NaN NaN NaN 167.03 1 167.03 166.53 167.53 0 0 0 0 0.22632 1 34108 34108 0.00056442 0 1 20896 5469 13673 13678 20760 20760 0.15556078950953633 IKDRHRKAK 9 Unmodified _IKDRHRKAK_ 0 0 0 REV__ENST00000438197.2_1_11:85444955-85468786:-|nuORF REV__ENST00000438197.2_1_11:85444955-85468786:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3191528320312 2 576.359631 1150.70471 NaN NaN NaN NaN NaN NaN NaN 142.63 1 142.63 142.13 143.13 0 0 0 0 0.23508 1 28439 28439 6.2058 2.2614 1 + 20897 16396 13674 13679 20761 20761 0.1353842923092543 IKEEINSF 8 Unmodified _IKEEINSF_ 0 0 0 REV__ENSG00000100209|ENST00000216027|HSCB REV__ENSG00000100209|ENST00000216027|HSCB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2576599121094 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 90.044 1 86 85.5 86.5 -4.0443 0 0 0 0.21486 1 17152 17152 12.532 0.89125 1 + 20898 14675 13675 13680 20762 20762 0.012100613150096251 IKEHKHKEKEK 11 Unmodified _IKEHKHKEKEK_ 0 0 0 REV__ENSG00000165632|ENST00000344293|TAF3 REV__ENSG00000165632|ENST00000344293|TAF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72357177734375 3 478.612292 1432.81505 -0.1955 -9.357E-05 -0.77813 -0.00037242 -0.97364 -0.00046599 478.6120253329591 13.524 0.16926 13.524 13.446 13.615 0 9 4 3 0 0 0 0.76834 1 1949 1949 3.5927 0.96144 1 598920 + 20899 17787 13676 13681 20763 20763 0.11595184708630768 IKEHKHKEKEK 11 Unmodified _IKEHKHKEKEK_ 0 0 0 REV__ENSG00000165632|ENST00000344293|TAF3 REV__ENSG00000165632|ENST00000344293|TAF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7212829589844 3 478.612292 1432.81505 -0.64723 -0.00030977 -0.040434 -1.9352E-05 -0.68767 -0.00032913 478.61205502781746 14.372 0.1383 13.199 13.107 13.245 -1.173 7 3 3 0 0 0 0.76834 1 1934 1934 3.5927 0.96144 1 345510 + 20900 17787 13676 13681 20764 20764 0.11595184708630768 IKEHKHKEKEK 11 Unmodified _IKEHKHKEKEK_ 0 0 0 REV__ENSG00000165632|ENST00000344293|TAF3 REV__ENSG00000165632|ENST00000344293|TAF3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 478.612292 1432.81505 -0.1955 -9.357E-05 -0.77813 -0.00037242 -0.97364 -0.00046599 478.6120253329591 13.524 0.16926 13.524 13.446 13.615 0 0.23681 -0.00081565 NaN 3.5927 9 4 3 NaN NaN NaN NaN 0 NaN NaN 0 598920 + 20901 17787 13676 13681 0.11595184708630768 IKEHKHKEKEK 11 Unmodified _IKEHKHKEKEK_ 0 0 0 REV__ENSG00000165632|ENST00000344293|TAF3 REV__ENSG00000165632|ENST00000344293|TAF3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 478.612292 1432.81505 -0.64723 -0.00030977 -0.040434 -1.9352E-05 -0.68767 -0.00032913 478.61205502781746 14.372 0.1383 13.199 13.107 13.245 -1.173 -0.088289 0.00024356 NaN 3.5927 7 3 3 NaN NaN NaN NaN 0 NaN NaN 0 345510 + 20902 17787 13676 13681 0.11595184708630768 IKEHKHKEKEK 11 Unmodified _IKEHKHKEKEK_ 0 0 0 REV__ENSG00000165632|ENST00000344293|TAF3 REV__ENSG00000165632|ENST00000344293|TAF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 478.612292 1432.81505 -1.6097 -0.0007704 0.41972 0.00020088 -1.1899 -0.00056952 478.6125719265676 14.349 0.14296 13.139 13.066 13.209 -1.2106 -0.14852 0.00090427 NaN 3.5927 9 3 3 NaN NaN NaN NaN 0 NaN NaN 0 314380 + 20903 17787 13676 13681 0.11595184708630768 IKELQYFF 8 Unmodified _IKELQYFF_ 0 0 0 REV__tr|U7T2S0|U7T2S0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00438PE=4SV=1 REV__tr|U7T2S0|U7T2S0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00438PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7808227539062 2 544.294768 1086.57498 0.4082 0.00022218 -1.2213 -0.00066473 -0.81307 -0.00044255 544.2939454788336 84.7 0.31972 84.7 84.449 84.769 0 13 8 2 0 0 0 0.97966 1 16474 16474 11.64 1.4569 1 1260200 + 20904 25341 13677 13682 20765 20765 0.03515815108403331 IKETTEEM 8 Unmodified _IKETTEEM_ 0 0 0 ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1;N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant;N4BP1|p.I719Mfs*8|1|0.17|ENSG00000102921|chr16:48548066-48548075|ATTTGTCACA/-|frameshift_variant ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENST00000564124.5_1_16:48580029-48653834:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 328.02349853515625 3 327.491681 979.453213 -0.50753 -0.00016621 -1.4444 -0.00047302 -1.9519 -0.00063923 327.491168093014 40.481 1.1361 37.846 37.506 38.642 -2.6348 83 31 4 0 0 0 1.0249 1 7498 7498 0 0 1 46954000 20905 2154 13678 13683 20766 20766 -0.03733595036248971 IKETTEEM 8 Unmodified _IKETTEEM_ 0 0 0 ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1;N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant;N4BP1|p.I719Mfs*8|1|0.17|ENSG00000102921|chr16:48548066-48548075|ATTTGTCACA/-|frameshift_variant ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENST00000564124.5_1_16:48580029-48653834:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 327.491681 979.453213 -0.35968 -0.00011779 -1.6132 -0.00052831 -1.9729 -0.00064611 327.491088156156 38.018 1.0262 38.018 37.612 38.638 0 0.14692 1.1072E-05 NaN 0 71 28 5 NaN NaN NaN NaN 0 NaN NaN 0 44287000 20906 2154 13678 13683 -0.03733595036248971 IKETTEEM 8 Unmodified _IKETTEEM_ 0 0 0 ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1;N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant;N4BP1|p.I719Mfs*8|1|0.17|ENSG00000102921|chr16:48548066-48548075|ATTTGTCACA/-|frameshift_variant ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENST00000564124.5_1_16:48580029-48653834:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 327.491681 979.453213 -0.0080806 -2.6463E-06 -1.9514 -0.00063907 -1.9595 -0.00064172 327.49100203017287 40.373 1.5477 37.833 37.498 39.045 -2.5398 -0.037464 -0.00032121 NaN 0 93 43 4 NaN NaN NaN NaN 0 NaN NaN 0 47327000 20907 2154 13678 13683 -0.03733595036248971 IKETTEEM 8 Unmodified _IKETTEEM_ 0 0 0 ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1;N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant;N4BP1|p.I719Mfs*8|1|0.17|ENSG00000102921|chr16:48548066-48548075|ATTTGTCACA/-|frameshift_variant ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENST00000564124.5_1_16:48580029-48653834:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 327.491681 979.453213 -0.58742 -0.00019237 -1.3839 -0.00045321 -1.9713 -0.00064558 327.49117818311765 40.276 1.966 37.786 37.439 39.405 -2.4896 -0.084812 0.0002364 NaN 0 119 55 4 NaN NaN NaN NaN 0 NaN NaN 0 39344000 20908 2154 13678 13683 -0.03733595036248971 IKFLVRFYQEV 11 Unmodified _IKFLVRFYQEV_ 0 0 0 REV__ENST00000295030.5_1_2:61275917-61276031:+|nuORF REV__ENST00000295030.5_1_2:61275917-61276031:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2316589355469 3 481.27825 1440.81292 0.3341 0.0001608 -2.0406 -0.0009821 -1.7065 -0.0008213 481.61220249680747 155.36 0.17618 150.11 150.01 150.18 -5.2526 6 4 2 0 0 0 0.96197 1 30134 30134 1.2148 0.10508 1 805310 + 20909 20366 13679 13684 20767 20767 0.11014755970859369 IKGTEPIVV 9 Unmodified _IKGTEPIVV_ 0 0 0 ENSG00000110395|ENST00000264033|CBL;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7279052734375 2 478.294768 954.574983 0.09268 4.4328E-05 0.40281 0.00019266 0.49549 0.00023699 478.29486325647395 116.4 0.87302 111.91 111.41 112.29 -4.486 31 24 2 0 0 0 0.25976 1 22955 22955 17.113 9.6358 1 1513300 20910 400 13680 13685 20768 20768 0.09587815108432096 IKHIKVNY 8 Unmodified _IKHIKVNY_ 0 0 0 REV__ZNF141|p.A149Lfs*9|1|0.04|ENSG00000131127|chr4:372881-372882|-/TTATCAT|frameshift_variant REV__ZNF141|p.A149Lfs*9|1|0.04|ENSG00000131127|chr4:372881-372882|-/TTATCAT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.5270690917969 3 338.874677 1013.6022 -0.093853 -3.1804E-05 -3.1713 -0.0010747 -3.2652 -0.0011065 338.87390401860216 22.769 0.1794 21.315 21.154 21.333 -1.4535 6 4 2 0 0 0 0.89926 1 3612 3612 1.3295 0 1 108960 + 20911 16056 13681 13686 20769 20769 0.09594343439459863 IKHLKKEKK 9 Unmodified _IKHLKKEKK_ 0 0 0 REV__nc|ENSG00000102387|Q5H9L4-3|TAF7L REV__nc|ENSG00000102387|Q5H9L4-3|TAF7L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3153686523438 2 576.384783 1150.75501 NaN NaN NaN NaN NaN NaN NaN 158.23 1 158.23 157.73 158.73 0 0 0 0 0.23508 1 31765 31765 3.2813 0.97858 1 + 20912 14838 13682 13687 20770 20770 0.18566538836080326 IKIKVGPKVL 10 Unmodified _IKIKVGPKVL_ 0 0 0 nc|ENSG00000127241|P48740-4|MASP1;ENSG00000127241|ENST00000296280|MASP1;nc|ENSG00000127241|P48740-3|MASP1;nc|ENSG00000127241|P48740|MASP1 nc|ENSG00000127241|P48740-4|MASP1 nc|ENSG00000127241|P48740-4|MASP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.785400390625 2 547.886627 1093.7587 0.12952 7.0963E-05 0.98061 0.00053726 1.1101 0.00060822 547.8856683912891 144.86 0.21133 139.8 139.66 139.87 -5.0671 8 5 2 0 0 0 0.91149 1 27952 27952 3.5965 1.9439 1 4309300 20913 3467 13683 13688 20771 20771 0.2155720860994279 IKKHRVTL 8 Unmodified _IKKHRVTL_ 0 0 0 ENST00000372847.1_1_9:131140285-131150177:+|nuORF;nc|ENSG00000167118|Q9BTM9-3|URM1;ENST00000470840.5_1_9:131140285-131152010:+|nuORF;ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1 ENST00000372847.1_1_9:131140285-131150177:+|nuORF ENST00000372847.1_1_9:131140285-131150177:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.2215881347656 3 332.222188 993.644734 NaN NaN NaN NaN NaN NaN NaN 157.6 1 152.81 152.31 153.31 -4.7885 0 0 0 0.21486 1 31343 31343 3.5965 0 1 20914 5789 13684 13689 20772 20772 0.14765738567689368 IKKKIKKLVY 10 Unmodified _IKKKIKKLVY_ 0 0 0 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.763671875 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 69.191 1 69.191 68.691 69.691 0 0 0 0 0.22588 1 13390 13390 0.45834 0.057624 1 + 20915 25311 13685 13690 20773 20773 0.24977428598162987 IKKKIKKLVY 10 Unmodified _IKKKIKKLVY_ 0 0 0 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7578125 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 70.805 1 70.805 70.305 71.305 0 0 0 0 0.22588 1 13716 13716 0.45834 0.057624 1 + 20916 25311 13685 13690 20774 20774 0.24977428598162987 IKKKIKKLVY 10 Unmodified _IKKKIKKLVY_ 0 0 0 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.760498046875 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 96.481 1 96.481 95.981 96.981 0 0 0 0 2.8426 1 18904 18904 0.043787 0.043787 1 + 20917 25311 13685 13690 20775 20775 0.24977428598162987 IKKKIKKLVY 10 Unmodified _IKKKIKKLVY_ 0 0 0 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.75634765625 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 80.126 1 76.321 75.821 76.821 -3.8048 0 0 0 0.22588 1 15202 15202 0.45834 0.15131 1 + 20918 25311 13685 13690 20776 20776 0.24977428598162987 IKKKIKKLVY 10 Unmodified _IKKKIKKLVY_ 0 0 0 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7686157226562 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 95.495 1 91.304 90.804 91.804 -4.1911 0 0 0 2.8426 1 18225 18225 0.043787 0 1 + 20919 25311 13685 13690 20777 20777 0.24977428598162987 IKKKIKKLVY 10 Unmodified _IKKKIKKLVY_ 0 0 0 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7656860351562 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 82.303 1 78.605 78.105 79.105 -3.6985 0 0 0 2.8426 1 15696 15696 0.043787 0.043787 1 + 20920 25311 13685 13690 20778 20778 0.24977428598162987 IKKKIKKLVY 10 Unmodified _IKKKIKKLVY_ 0 0 0 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.77099609375 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 133.45 1 128.63 128.13 129.13 -4.8175 0 0 0 0.22588 1 25684 25684 0.40072 0.093686 1 + 20921 25311 13685 13690 20779 20779 0.24977428598162987 IKKKKVIMKK 10 Unmodified _IKKKKVIMKK_ 0 0 0 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7576904296875 2 622.435961 1242.85737 NaN NaN NaN NaN NaN NaN NaN 105.62 1 101.36 100.86 101.86 -4.2638 0 0 0 2.8426 1 20789 20789 0.13989 0 1 20922 1738 13686 13691 20780 20780 0.2456548858331189 IKKLESLLH 9 Unmodified _IKKLESLLH_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2718505859375 2 540.842416 1079.67028 0.28836 0.00015596 -2.0738 -0.0011216 -1.7854 -0.00096562 541.343083254115 146.58 0.2077 141.89 141.75 141.95 -4.6868 6 5 2 0 0 0 0.86532 1 29041 29041 8.5933 0.68312 1 4430000 + 20923 16048 13687 13692 20781 20781 0.13363168299474637 IKKPIQANQY 10 Unmodified _IKKPIQANQY_ 0 0 0 HTR2B|p.K426*|1|0.38|ENSG00000135914|chr2:231108687-231108688|-/A|frameshift_variant;ENSG00000135914|ENST00000258400|HTR2B HTR2B|p.K426*|1|0.38|ENSG00000135914|chr2:231108687-231108688|-/A|frameshift_variant HTR2B|p.K426*|1|0.38|ENSG00000135914|chr2:231108687-231108688|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2728271484375 2 601.84823 1201.68191 NaN NaN NaN NaN NaN NaN NaN 75.93 1 72.515 72.015 73.015 -3.4151 0 0 0 0.22588 1 14814 14814 10.824 2.0785 1 20924 3965 13688 13693 20782 20782 0.0891336532281457 IKKRIFFLII 10 Unmodified _IKKRIFFLII_ 0 0 0 REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.7276306152344 4 323.471964 1289.85875 0.16101 5.2081E-05 1.1016 0.00035633 1.2626 0.00040841 323.723090377219 84.175 0.65544 80.266 80.008 80.664 -3.9093 38 18 3 0 0 0 0.53283 1 16001 16001 0.69767 0 1 4025300 + 20925 24996 13689 13694 20783 20783 0.22541445943738836 IKKRRKRRRNW 11 Unmodified _IKKRRKRRRNW_ 0 0 0 REV__TP53BP1|p.I104Sfs*95|1|0.74|ENSG00000067369|chr15:43491716-43491716|G/-|frameshift_variant REV__TP53BP1|p.I104Sfs*95|1|0.74|ENSG00000067369|chr15:43491716-43491716|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2762451171875 3 533.009714 1596.00731 NaN NaN NaN NaN NaN NaN NaN 113.53 1 113.53 113.03 114.03 0 0 0 0 0.22632 1 22326 22326 0 0 1 + 20926 24835 13690 13695 20784 20784 0.23314989689993126 IKKVHNKLHK 10 Unmodified _IKKVHNKLHK_ 0 0 0 REV__ENSG00000175105|ENST00000636215|ZNF654 REV__ENSG00000175105|ENST00000636215|ZNF654 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7618408203125 2 622.901131 1243.78771 NaN NaN NaN NaN NaN NaN NaN 144.85 1 140.18 139.68 140.68 -4.6694 0 0 0 2.8426 1 28698 28698 0.69767 0.69767 1 + 20927 18456 13691 13696 20785 20785 0.17556745958904685 IKKVKKKKKK 10 Unmodified _IKKVKKKKKK_ 0 0 0 RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 628.5291137695312 2 628.46865 1254.92275 NaN NaN NaN NaN NaN NaN NaN 173.97 1 173.97 173.47 174.47 0 0 0 0 2.8426 1 35998 35998 0.13989 0.13989 1 20928 7104 13692 13697 20786 20786 0.3054822610067731 IKKVKKKKKKK 11 Unmodified _IKKVKKKKKKK_ 0 0 0 RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 692.1725463867188 2 692.516131 1383.01771 NaN NaN NaN NaN NaN NaN NaN 168.35 1 163.46 162.96 163.96 -4.8916 0 0 0 0.23698 1 33182 33182 0 0 1 20929 7104 13693 13698 20787 20787 0.34152159571863194 IKLFIEKLEK 10 Unmodified _IKLFIEKLEK_ 0 0 0 tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1 tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1 tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7498779296875 2 630.899931 1259.78531 NaN NaN NaN NaN NaN NaN NaN 156.51 1 151.24 150.74 151.74 -5.2712 0 0 0 0.22588 1 30354 30354 12.241 2.1667 1 20930 26354 13694 13699 20788 20788 0.16580852710603722 IKLIIKAKQP 10 Unmodified _IKLIIKAKQP_ 0 0 0 REV__ENSG00000125255|ENST00000245312|SLC10A2 REV__ENSG00000125255|ENST00000245312|SLC10A2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.316162109375 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 165.47 1 160.49 159.99 160.99 -4.9811 0 0 0 0.22588 1 32346 32346 3.5965 1.9439 1 + 20931 15805 13695 13700 20789 20789 0.21080593638635037 IKMKTFEGFC 10 Unmodified _IKMKTFEGFC_ 0 0 0 nc|ENSG00000115239|Q9Y575-3|ASB3;ENSG00000115239|ENST00000263634|ASB3 nc|ENSG00000115239|Q9Y575-3|ASB3 nc|ENSG00000115239|Q9Y575-3|ASB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2996215820312 2 602.29867 1202.58279 NaN NaN NaN NaN NaN NaN NaN 178.82 1 178.82 178.32 179.32 0 0 0 0 0.22588 1 37041 37041 1.4819 0 1 20932 2834 13696 13701 20790 20790 -0.01040116957938153 IKMLILIKLF 10 Unmodified _IKMLILIKLF_ 0 0 0 REV__ENST00000565598.2_1_16:53404185-53404910:-|nuORF REV__ENST00000565598.2_1_16:53404185-53404910:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 616.3866577148438 2 616.414163 1230.81377 NaN NaN NaN NaN NaN NaN NaN 166.3 1 161.35 160.85 161.85 -4.9484 0 0 0 0.22588 1 32572 32572 1.4819 0 1 + 20933 23111 13697 13702 20791 20791 0.20759879086176625 IKNKRKSFC 9 Unmodified _IKNKRKSFC_ 0 0 0 REV__nc|ENSG00000141338|O94911-1|ABCA8 REV__nc|ENSG00000141338|O94911-1|ABCA8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21722412109375 3 375.218337 1122.63318 -0.0005081 -1.9065E-07 -1.3962 -0.00052386 -1.3967 -0.00052405 375.2177034156855 24.149 0.52024 22.615 22.434 22.955 -1.5342 32 14 3 0 0 0 0.6427 1 3964 3964 10.151 0.76745 1 2740600 + 20934 16621 13698 13703 20792 20792 0.07677173482056787 IKPKKLLNPVK 11 Unmodified _IKPKKLLNPVK_ 0 0 0 nc|ENSG00000168309|O95990-2|FAM107A;ENSG00000168309|ENST00000360997|FAM107A;nc|ENSG00000168309|O95990-3|FAM107A;nc|ENSG00000168309|O95990-4|FAM107A nc|ENSG00000168309|O95990-2|FAM107A nc|ENSG00000168309|O95990-2|FAM107A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 639.4431762695312 2 639.437015 1276.85948 NaN NaN NaN NaN NaN NaN NaN 163.11 1 157.96 157.46 158.46 -5.1438 0 0 0 0.22632 1 31723 31723 0 0 1 20935 5896 13699 13704 20793 20793 0.23212240592738453 IKQIWNPQAY 10 Unmodified _IKQIWNPQAY_ 0 0 0 REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7721557617188 2 630.840405 1259.66626 NaN NaN NaN NaN NaN NaN NaN 131.76 1 126.91 126.41 127.41 -4.8527 0 0 0 0.22588 1 25305 25305 6.2058 2.0163 1 + 20936 13466 13700 13705 20794 20794 0.046810788057428 IKRGRVLQQY 10 Unmodified _IKRGRVLQQY_ 0 0 0 REV__ENSG00000078401|ENST00000379375|EDN1 REV__ENSG00000078401|ENST00000379375|EDN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7684936523438 2 630.880396 1259.74624 NaN NaN NaN NaN NaN NaN NaN 116.29 1 116.29 115.79 116.79 0 0 0 0 0.22588 1 22898 22898 3.5965 0.31518 1 + 20937 14379 13701 13706 20795 20795 0.12675565199606353 IKRQQQQRQQQ 11 Unmodified _IKRQQQQRQQQ_ 0 0 0 ENST00000480468.1_1_11:116728475-116732017:-|nuORF;nc|ENSG00000160584|Q9Y2K2-6|SIK3;nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3 ENST00000480468.1_1_11:116728475-116732017:-|nuORF ENST00000480468.1_1_11:116728475-116732017:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.264892578125 3 490.274562 1467.80186 NaN NaN NaN NaN NaN NaN NaN 65.663 1 62.38 61.88 62.88 -3.2832 0 0 0 0.22632 1 12348 12348 0.172 0 1 20938 5255 13702 13707 20796 20796 0.08666746649259949 IKSLKIKYR 9 Unmodified _IKSLKIKYR_ 0 0 0 ENSG00000169989|ENST00000304337|TIGD4 ENSG00000169989|ENST00000304337|TIGD4 ENSG00000169989|ENST00000304337|TIGD4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 574.77978515625 2 574.879333 1147.74411 NaN NaN NaN NaN NaN NaN NaN 167.02 1 162.23 161.73 162.73 -4.7898 0 0 0 0.23508 1 33625 33625 6.7232 2.3939 1 20939 6027 13703 13708 20797 20797 0.17615136461768088 IKVHLKLRRPV 11 Unmodified _IKVHLKLRRPV_ 0 0 0 nc|ENSG00000266094|Q8WWW0-2|RASSF5;nc|ENSG00000266094|Q8WWW0-3|RASSF5;RASSF5|p.L342Sfs*18|1|0.32|ENSG00000266094|chr1:206585211-206585211|C/-|frameshift_variant;ENSG00000266094|ENST00000579436|RASSF5 nc|ENSG00000266094|Q8WWW0-2|RASSF5 nc|ENSG00000266094|Q8WWW0-2|RASSF5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7545471191406 3 453.641746 1357.90341 NaN NaN NaN NaN NaN NaN NaN 13.796 1 13.796 13.296 14.296 0 0 0 0 0.23698 1 2015 2015 0.08335 0 1 20940 7982 13704 13709 20798 20798 0.23877269809759127 IKVKLLRSLPQ 11 Unmodified _IKVKLLRSLPQ_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 648.405029296875 2 647.932097 1293.84964 0.42905 0.00027799 -1.9654 -0.0012735 -1.5364 -0.00099547 648.4314741962618 165.98 0.14037 161 160.91 161.05 -4.9811 5 3 2 0 0 0 0.79336 1 32486 32486 4.5289 1.7937 1 6822800 20941 5736 13705 13710 20799 20799 0.2144705258740487 IKVWLQEY 8 Unmodified _IKVWLQEY_ 0 0 0 ENST00000560801.5_2_15:31320559-31354823:-|nuORF;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1 ENST00000560801.5_2_15:31320559-31354823:-|nuORF ENST00000560801.5_2_15:31320559-31354823:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2019958496094 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 89.263 1 89.263 88.763 89.763 0 0 0 0 0.21486 1 17431 17431 1.4819 0 1 20942 3830 13706 13711 20800 20800 0.05019217482708882 IKWDPTGNL 9 Unmodified _IKWDPTGNL_ 0 0 0 ENSG00000177565|ENST00000457928|TBL1XR1 ENSG00000177565|ENST00000457928|TBL1XR1 ENSG00000177565|ENST00000457928|TBL1XR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2791137695312 2 522.279649 1042.54475 -0.46755 -0.00024419 0.95888 0.0005008 0.49133 0.00025661 522.2802123177073 126.96 0.70601 122.17 121.74 122.45 -4.7958 34 19 2 0 0 0 0.17935 1 24309 24309 39.95 3.4435 1 2314800 20943 6521 13707 13712 20801 20801 0.025174564432290936 IKWIKRWCYIR 11 Unmodified _IKWIKRWCYIR_ 0 0 0 REV__ENST00000312475.4_1_15:89008823-89008904:-|nuORF REV__ENST00000312475.4_1_15:89008823-89008904:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2808837890625 3 522.302624 1563.88604 -0.54316 -0.00028369 1.1605 0.00060613 0.61735 0.00032244 522.6381146215862 63.204 0.18641 59.788 59.644 59.831 -3.4158 8 4 2 0 0 0 0.96225 1 11799 11799 0.45452 0.37117 1 645350 + 20944 20498 13708 13713 20802 20802 0.12665606212476632 IKYAWFST 8 Unmodified _IKYAWFST_ 0 0 0 REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.1432800292969 3 339.179766 1014.51747 NaN NaN NaN NaN NaN NaN NaN 67.526 1 67.526 67.026 68.026 0 0 0 0 0.23899 1 13055 13055 1.3295 0 1 + 20945 14359 13709 13714 20803 20803 0.010789729028601869 IKYRQSYIFSQ 11 Unmodified _IKYRQSYIFSQ_ 0 0 0 ENST00000470811.5_1_3:156544101-156697065:+|nuORF;ENSG00000197980|ENST00000356539|LEKR1 ENST00000470811.5_1_3:156544101-156697065:+|nuORF ENST00000470811.5_1_3:156544101-156697065:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7342834472656 3 478.257626 1431.75105 NaN NaN NaN NaN NaN NaN NaN 125.1 1 120.34 119.84 120.84 -4.7681 0 0 0 0.22632 1 24017 24017 1.4074 1.2675 1 20946 7418 13710 13715 20804 20804 0.0524440455169497 ILAAKKAVLKL 11 Unmodified _ILAAKKAVLKL_ 0 0 0 REV__ENST00000490941.1_1_3:170670926-170671100:-|nuORF REV__ENST00000490941.1_1_3:170670926-170671100:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 584.3006591796875 2 584.413009 1166.81146 NaN NaN NaN NaN NaN NaN NaN 171.3 1 166.51 166.01 167.01 -4.7898 0 0 0 0.22632 1 34820 34820 0.026206 0 1 + 20947 22307 13711 13716 20805 20805 0.23473166672738444 ILADIVISA 9 Unmodified _ILADIVISA_ 0 0 0 ENST00000320415.6_1_7:82219286-82219658:-|nuORF;nc|ENSG00000065911|P13995-2|MTHFD2;ENSG00000065911|ENST00000394053|MTHFD2 ENST00000320415.6_1_7:82219286-82219658:-|nuORF ENST00000320415.6_1_7:82219286-82219658:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23736572265625 2 457.781493 913.548434 0.083426 3.8191E-05 0.28464 0.0001303 0.36806 0.00016849 457.78154033562373 160.63 0.45973 155.84 155.65 156.11 -4.7952 17 12 2 0 0 0 0.11447 2 31937 31937;31965 50.855 12.881 1 858620 20948 1362 13712 13717 20806;20807 20806 0.08820126217096913 ILADIVISA 9 Unmodified _ILADIVISA_ 0 0 0 ENST00000320415.6_1_7:82219286-82219658:-|nuORF;nc|ENSG00000065911|P13995-2|MTHFD2;ENSG00000065911|ENST00000394053|MTHFD2 ENST00000320415.6_1_7:82219286-82219658:-|nuORF ENST00000320415.6_1_7:82219286-82219658:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 457.781493 913.548434 0.44559 0.00020398 -0.16671 -7.6318E-05 0.27888 0.00012766 457.78139168251244 161.41 0.2821 156.16 155.91 156.19 -5.2527 0.15845 -0.00018726 NaN 50.855 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 833360 20949 1362 13712 13717 0.08820126217096913 ILAESPHPPVW 11 Unmodified _ILAESPHPPVW_ 0 0 0 TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7815551757812 2 623.334956 1244.65536 0.34547 0.00021534 1.3063 0.00081428 1.6518 0.0010296 623.8382738631284 145.92 0.13708 140.81 140.69 140.82 -5.1108 5 3 2 0 0 0 0.86301 1 28184 28184 21.537 2.175 1 2661300 20950 26520 13713 13718 20808 20808 0.04281676431446613 ILAIHSDG 8 Unmodified _ILAIHSDG_ 0 0 0 ENSG00000197532|ENST00000641622|OR6Y1 ENSG00000197532|ENST00000641622|OR6Y1 ENSG00000197532|ENST00000641622|OR6Y1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 413.0608215332031 2 413.226885 824.439217 NaN NaN NaN NaN NaN NaN NaN 133.55 1 128.68 128.18 129.18 -4.8726 0 0 0 0.22834 1 25662 25662 1.4551 0 1 20951 7375 13714 13719 20809 20809 0.019975403176204054 ILAKEVEIV 9 Unmodified _ILAKEVEIV_ 0 0 0 ENST00000572221.5_1_16:67909733-67911757:+|nuORF;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant;EDC4|p.D801Mfs*15|1|0.26|ENSG00000038358|chr16:67880857-67880857|G/-|frameshift_variant;ENSG00000038358|ENST00000358933|EDC4 ENST00000572221.5_1_16:67909733-67911757:+|nuORF ENST00000572221.5_1_16:67909733-67911757:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.2557373046875 2 507.3157 1012.61685 -0.52568 -0.00026669 0.46729 0.00023706 -0.058392 -2.9623E-05 507.31581959661304 109.28 0.74002 104.9 104.54 105.28 -4.3776 42 20 3 0 0 0 0.54058 1 21572 21572 14.987 7.5095 1 1586300 20952 913 13715 13720 20810 20810 0.1110437079694293 ILAKEVEIV 9 Unmodified _ILAKEVEIV_ 0 0 0 ENST00000572221.5_1_16:67909733-67911757:+|nuORF;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant;EDC4|p.D801Mfs*15|1|0.26|ENSG00000038358|chr16:67880857-67880857|G/-|frameshift_variant;ENSG00000038358|ENST00000358933|EDC4 ENST00000572221.5_1_16:67909733-67911757:+|nuORF ENST00000572221.5_1_16:67909733-67911757:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 507.3157 1012.61685 -0.53879 -0.00027334 0.46464 0.00023572 -0.074153 -3.7619E-05 507.31588338629314 109.55 0.67023 105.1 104.75 105.42 -4.4518 0.10055 -1.0431E-06 NaN 14.987 36 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1698800 20953 913 13715 13720 0.1110437079694293 ILALPNLTSH 10 Unmodified _ILALPNLTSH_ 0 0 0 REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.211181640625 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 33.044 1 30.897 30.397 31.397 -2.1468 0 0 0 0.22588 1 5752 5752 3.3196 0.58445 1 + 20954 20643 13716 13721 20811 20811 0.0825400488570267 ILAPLSHEAQ 10 Unmodified _ILAPLSHEAQ_ 0 0 0 REV__ENST00000559051.1_1_15:65411613-65412071:-|nuORF REV__ENST00000559051.1_1_15:65411613-65412071:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2011413574219 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 84.373 1 80.709 80.209 81.209 -3.6641 0 0 0 0.22588 1 16492 16492 1.7423 0 1 + 20955 14547 13717 13722 20812 20812 0.046171279889904326 ILCQGKKLY 9 Unmodified _ILCQGKKLY_ 0 0 0 IRGC|p.F163L|1|0.17|ENSG00000124449|chr19:43719045-43719045|T/C|missense_variant IRGC|p.F163L|1|0.17|ENSG00000124449|chr19:43719045-43719045|T/C|missense_variant IRGC|p.F163L|1|0.17|ENSG00000124449|chr19:43719045-43719045|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.275634765625 2 533.309895 1064.60524 NaN NaN NaN NaN NaN NaN NaN 149.87 1 144.75 144.25 145.25 -5.1204 0 0 0 0.23411 1 29041 29041 13.508 3.3245 1 20956 11953 13718 13723 20813 20813 0.07551850501977242 ILCVKKMDT 9 Unmodified _ILCVKKMDT_ 0 0 0 REV__ENST00000266589.10_2_12:46369150-46384197:-|nuORF REV__ENST00000266589.10_2_12:46369150-46384197:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.07122802734375 3 350.861051 1049.56132 0.22672 7.9546E-05 0.049838 1.7486E-05 0.27655 9.7032E-05 350.86105620655155 33.38 0.66493 31.233 31.006 31.67 -2.1468 23 18 2 0 0 0 0.8799 1 5883 5883 4.897 3.0528 1 626600 + 20957 20252 13719 13724 20814 20814 0.03852498013316108 ILCVKKMDT 9 Unmodified _ILCVKKMDT_ 0 0 0 REV__ENST00000266589.10_2_12:46369150-46384197:-|nuORF REV__ENST00000266589.10_2_12:46369150-46384197:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 350.861051 1049.56132 -0.27976 -9.8158E-05 0.85798 0.00030103 0.57822 0.00020287 350.861331070042 31.339 0.52699 31.339 31.108 31.635 0 0.082191 0.00030044 NaN 4.897 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1255000 + 20958 20252 13719 13724 0.03852498013316108 ILCVKKMDT 9 Unmodified _ILCVKKMDT_ 0 0 0 REV__ENST00000266589.10_2_12:46369150-46384197:-|nuORF REV__ENST00000266589.10_2_12:46369150-46384197:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 350.861051 1049.56132 -0.2931 -0.00010284 0.8098 0.00028413 0.5167 0.00018129 350.86125866230327 33.518 0.58772 31.2 30.975 31.563 -2.3175 -0.056867 0.00024972 NaN 4.897 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 642350 + 20959 20252 13719 13724 0.03852498013316108 ILCVKKMDT 9 Unmodified _ILCVKKMDT_ 0 0 0 REV__ENST00000266589.10_2_12:46369150-46384197:-|nuORF REV__ENST00000266589.10_2_12:46369150-46384197:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 350.861051 1049.56132 -0.28227 -9.9037E-05 0.85128 0.00029868 0.56901 0.00019965 350.86127402647367 33.472 0.55053 31.256 30.976 31.527 -2.2158 -0.0014319 0.00029338 NaN 4.897 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 552710 + 20960 20252 13719 13724 0.03852498013316108 ILDAGGHNV 9 Unmodified _ILDAGGHNV_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.2491760253906 2 448.235242 894.45593 -0.072867 -3.2662E-05 -0.056637 -2.5387E-05 -0.1295 -5.8048E-05 448.23523575096397 44.95 1.2292 42.085 41.6 42.83 -2.8653 121 34 5 0 0 0 0.10537 1 8134 8134 51.415 26.534 1 25798000 20961 6305;12839 13720 13725 20815 20815 0.004480412035718473 ILDAGGHNV 9 Unmodified _ILDAGGHNV_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 448.235242 894.45593 0.43573 0.00019531 -0.39632 -0.00017764 0.039411 1.7665E-05 448.235024662305 42.109 0.84456 42.109 41.76 42.605 0 -0.014417 -0.00023497 NaN 51.415 58 23 3 NaN NaN NaN NaN 0 NaN NaN 0 17347000 20962 6305;12839 13720 13725 0.004480412035718473 ILDAGGHNV 9 Unmodified _ILDAGGHNV_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 448.235242 894.45593 -0.13422 -6.016E-05 0.035263 1.5806E-05 -0.098953 -4.4354E-05 448.23525335791703 44.833 1.1698 42.043 41.605 42.775 -2.79 -0.080603 0.00015193 NaN 51.415 84 32 4 NaN NaN NaN NaN 0 NaN NaN 0 32568000 20963 6305;12839 13720 13725 0.004480412035718473 ILDAGGHNV 9 Unmodified _ILDAGGHNV_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 448.235242 894.45593 -0.19089 -8.5566E-05 0.028719 1.2873E-05 -0.16218 -7.2693E-05 448.23525212574884 45.004 1.158 42.257 41.779 42.937 -2.7475 0.13355 0.00014606 NaN 51.415 117 32 5 NaN NaN NaN NaN 0 NaN NaN 0 28445000 20964 6305;12839 13720 13725 0.004480412035718473 ILDAQTAFV 9 Unmodified _ILDAQTAFV_ 0 0 0 nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1 nc|ENSG00000103222|P33527-8|ABCC1 nc|ENSG00000103222|P33527-8|ABCC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2715148925781 2 489.26875 976.522947 0.1291 6.3164E-05 0.020512 1.0036E-05 0.14961 7.32E-05 489.2688246258822 135.75 0.77206 131.11 130.69 131.47 -4.6399 40 21 3 0 0 0 0.15889 1 26784 26784 29.419 28.204 1 4692200 20965 2175 13721 13726 20816 20816 0.03374651694662134 ILDAQTAFV 9 Unmodified _ILDAQTAFV_ 0 0 0 nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1 nc|ENSG00000103222|P33527-8|ABCC1 nc|ENSG00000103222|P33527-8|ABCC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26959228515625 2 489.26875 976.522947 0.17547 8.5853E-05 0.12741 6.2337E-05 0.30288 0.00014819 489.26876346885416 135.99 0.63197 131.09 130.75 131.38 -4.8951 38 17 3 0 0 0 0.10537 1 26134 26134 42.232 41.357 1 3940300 20966 2175 13721 13726 20817 20817 0.03374651694662134 ILDAQTAFV 9 Unmodified _ILDAQTAFV_ 0 0 0 nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1 nc|ENSG00000103222|P33527-8|ABCC1 nc|ENSG00000103222|P33527-8|ABCC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.26875 976.522947 0.18737 9.1676E-05 -0.23729 -0.0001161 -0.049917 -2.4423E-05 489.26869962161476 130.84 0.60893 130.84 130.51 131.12 0 -0.18819 -0.00024069 NaN 42.232 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3075000 20967 2175 13721 13726 0.03374651694662134 ILDAQTAFV 9 Unmodified _ILDAQTAFV_ 0 0 0 nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1 nc|ENSG00000103222|P33527-8|ABCC1 nc|ENSG00000103222|P33527-8|ABCC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.26875 976.522947 -0.025622 -1.2536E-05 0.11577 5.6642E-05 0.090145 4.4105E-05 489.2688379587594 135.89 0.71567 131.06 130.7 131.41 -4.8307 0.034163 0.00010479 NaN 42.232 41 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4233400 20968 2175 13721 13726 0.03374651694662134 ILDEAIYKV 9 Unmodified _ILDEAIYKV_ 0 0 0 nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD nc|ENSG00000166578|Q96DY2-3|IQCD nc|ENSG00000166578|Q96DY2-3|IQCD MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2611694335938 2 532.305332 1062.59611 0.077506 4.1257E-05 0.17033 9.0669E-05 0.24784 0.00013193 532.3053147586805 115.63 0.84285 115.63 115.27 116.12 0 71 23 4 0 0 0 0.029139 3 22757 22757;22774;22780 82.529 30.261 1 16745000 20969 5734 13722 13727 20818;20819;20820 20818 0.06731780417271693 ILDEAIYKV 9 Unmodified _ILDEAIYKV_ 0 0 0 nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD nc|ENSG00000166578|Q96DY2-3|IQCD nc|ENSG00000166578|Q96DY2-3|IQCD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2759399414062 2 532.305332 1062.59611 0.33832 0.00018009 -0.35732 -0.0001902 -0.019005 -1.0116E-05 532.3051076898136 120.06 1.1119 115.54 114.91 116.02 -4.5221 86 31 4 0 0 0 0.17935 2 23734 23627;23734 39.95 19.496 1 19651000 20970 5734 13722 13727 20821;20822 20822 0.06731780417271693 ILDEAIYKV 9 Unmodified _ILDEAIYKV_ 0 0 0 nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD nc|ENSG00000166578|Q96DY2-3|IQCD nc|ENSG00000166578|Q96DY2-3|IQCD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2646484375 2 532.305332 1062.59611 0.9732 0.00051804 -1.0683 -0.00056865 -0.095075 -5.0609E-05 532.3047504684738 120.19 1.1326 115.54 114.81 115.94 -4.645 93 31 4 0 0 0 0.039785 2 23101 23101;23128 75.761 31.903 1 19534000 20971 5734 13722 13727 20823;20824 20823 0.06731780417271693 ILDEAIYKV 9 Unmodified _ILDEAIYKV_ 0 0 0 nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD nc|ENSG00000166578|Q96DY2-3|IQCD nc|ENSG00000166578|Q96DY2-3|IQCD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2750854492188 2 532.305332 1062.59611 0.42944 0.00022859 -0.45548 -0.00024245 -0.026037 -1.386E-05 532.3050079265336 120.03 1.0705 115.57 114.99 116.06 -4.467 76 30 3 0 0 0 0.019708 1 23112 23112 92.653 50.814 1 19232000 20972 5734 13722 13727 20825 20825 0.06731780417271693 ILDESTRLP 9 Unmodified _ILDESTRLP_ 0 0 0 REV__nc|ENSG00000163755|Q969F9-2|HPS3 REV__nc|ENSG00000163755|Q969F9-2|HPS3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2806396484375 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 134.32 1 134.32 133.82 134.82 0 0 0 0 0.23508 1 26586 26586 9.3831 0 1 + 20973 17610 13723 13728 20826 20826 0.04629421752088092 ILDETLENV 9 Unmodified _ILDETLENV_ 0 0 0 nc|ENSG00000172795|Q8IU60-2|DCP2;ENSG00000172795|ENST00000389063|DCP2 nc|ENSG00000172795|Q8IU60-2|DCP2 nc|ENSG00000172795|Q8IU60-2|DCP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6930541992188 2 523.274229 1044.53391 0.097742 5.1146E-05 -0.52752 -0.00027604 -0.42978 -0.00022489 523.2741441154838 119.01 0.92139 114.51 114.15 115.07 -4.502 42 25 2 0 0 0 0.10537 1 23514 23514 42.232 37.516 1 1864900 20974 6240 13724 13729 20827 20827 0.013420092782780557 ILDGNDEKY 9 Unmodified _ILDGNDEKY_ 0 0 0 ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1;ENST00000491967.1_1_22:24135798-24143581:+|nuORF ENSG00000099956|ENST00000644036|SMARCB1 ENSG00000099956|ENST00000644036|SMARCB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2840576171875 2 533.756204 1065.49785 NaN NaN NaN NaN NaN NaN NaN 48.254 1 45.385 44.885 45.885 -2.869 0 0 0 0.21844 1 9126 9126 18.146 0 1 20975 1912 13725 13730 20828 20828 -0.03227447898552782 ILDHQQFDY 9 Unmodified _ILDHQQFDY_ 0 0 0 SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.E1445Sfs*15|1|0.09|ENSG00000133812|chr11:9808111-9808111|T/-|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000526353.1_1_11:9983413-9985421:-|nuORF SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2684936523438 2 589.77747 1177.54039 0.27223 0.00016055 -0.031313 -1.8468E-05 0.24091 0.00014209 589.77730476649 87.077 0.55738 87.077 86.805 87.362 0 22 15 2 0 0 0 0.39168 1 16975 16975 11.749 9.8217 1 3489100 20976 3817 13726 13731 20829 20829 -0.041280527703293046 ILDHQQFDY 9 Unmodified _ILDHQQFDY_ 0 0 0 SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.E1445Sfs*15|1|0.09|ENSG00000133812|chr11:9808111-9808111|T/-|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000526353.1_1_11:9983413-9985421:-|nuORF SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2537841796875 2 589.77747 1177.54039 0.39969 0.00023573 0.26851 0.00015836 0.6682 0.00039409 589.7774420314578 91.358 0.62458 87.433 87.063 87.688 -3.9251 41 17 3 0 0 0 2.219E-07 3 17876 17826;17876;17928 145.13 88.953 1 4377900 20977 3817 13726 13731 20830;20831;20832 20831 -0.041280527703293046 ILDHQQFDY 9 Unmodified _ILDHQQFDY_ 0 0 0 SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.E1445Sfs*15|1|0.09|ENSG00000133812|chr11:9808111-9808111|T/-|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000526353.1_1_11:9983413-9985421:-|nuORF SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2488403320312 2 589.77747 1177.54039 0.72015 0.00042473 -0.23502 -0.00013861 0.48513 0.00028612 589.7772351913543 91.464 0.50706 87.369 87.125 87.633 -4.0946 33 14 3 0 0 0 0.007198 1 17429 17429 110.55 62.804 1 4130200 20978 3817 13726 13731 20833 20833 -0.041280527703293046 ILDHQQFDY 9 Unmodified _ILDHQQFDY_ 0 0 0 SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.E1445Sfs*15|1|0.09|ENSG00000133812|chr11:9808111-9808111|T/-|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000526353.1_1_11:9983413-9985421:-|nuORF SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.25830078125 2 589.77747 1177.54039 0.14477 8.5379E-05 -0.01337 -7.8851E-06 0.1314 7.7494E-05 589.7774202591271 91.164 0.68877 87.356 86.927 87.616 -3.8083 39 19 3 0 0 0 0.0088712 2 17470 17470;17476 106.94 61.241 1 3047400 20979 3817 13726 13731 20834;20835 20834 -0.041280527703293046 ILDIPFHQV 9 Unmodified _ILDIPFHQV_ 0 0 0 nc|ENSG00000100416|O75648-2|TRMU;ENSG00000100416|ENST00000645190|TRMU;ENST00000486620.5_1_22:46727586-46742367:+|nuORF;ENST00000496831.5_1_22:46731930-46742367:+|nuORF;nc|ENSG00000100416|O75648-5|TRMU nc|ENSG00000100416|O75648-2|TRMU nc|ENSG00000100416|O75648-2|TRMU MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2691040039062 2 541.305667 1080.59678 NaN NaN NaN NaN NaN NaN NaN 152.62 1 152.62 152.12 153.12 0 0 0 0 0.16777 1 30573 30573 24.882 19.013 1 20980 1974 13727 13732 20836 20836 0.059706198569983826 ILDIPFHQV 9 Unmodified _ILDIPFHQV_ 0 0 0 nc|ENSG00000100416|O75648-2|TRMU;ENSG00000100416|ENST00000645190|TRMU;ENST00000486620.5_1_22:46727586-46742367:+|nuORF;ENST00000496831.5_1_22:46731930-46742367:+|nuORF;nc|ENSG00000100416|O75648-5|TRMU nc|ENSG00000100416|O75648-2|TRMU nc|ENSG00000100416|O75648-2|TRMU MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2738037109375 2 541.305667 1080.59678 NaN NaN NaN NaN NaN NaN NaN 157.81 1 152.54 152.04 153.04 -5.2712 0 0 0 0.13259 1 30613 30613 32.786 7.3864 1 20981 1974 13727 13732 20837 20837 0.059706198569983826 ILDKFTEEV 9 Unmodified _ILDKFTEEV_ 0 0 0 ENST00000491436.1_1_1:165638124-165649867:-|nuORF;nc|ENSG00000143149|P49189-2|ALDH9A1;nc|ENSG00000143149|P49189|ALDH9A1;ENSG00000143149|ENST00000354775|ALDH9A1 ENST00000491436.1_1_1:165638124-165649867:-|nuORF ENST00000491436.1_1_1:165638124-165649867:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7683715820312 2 547.292422 1092.57029 -0.092186 -5.0452E-05 1.785 0.00097694 1.6929 0.00092648 547.7949949074276 111.53 0.62601 107.11 106.68 107.3 -4.4231 30 17 2 0 0 0 0.14842 1 21936 21936 47.594 11.55 1 2657400 20982 4456 13728 13733 20838 20838 0.027708861749943026 ILDKFTEEV 9 Unmodified _ILDKFTEEV_ 0 0 0 ENST00000491436.1_1_1:165638124-165649867:-|nuORF;nc|ENSG00000143149|P49189-2|ALDH9A1;nc|ENSG00000143149|P49189|ALDH9A1;ENSG00000143149|ENST00000354775|ALDH9A1 ENST00000491436.1_1_1:165638124-165649867:-|nuORF ENST00000491436.1_1_1:165638124-165649867:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7684326171875 2 547.292422 1092.57029 0.68665 0.0003758 1.086 0.00059436 1.7726 0.00097015 547.2930548925767 111.32 0.69324 107.09 106.8 107.49 -4.2289 30 19 2 0 0 0 0.44869 1 21489 21489 29.841 4.8496 1 1974100 20983 4456 13728 13733 20839 20839 0.027708861749943026 ILDKIVQKV 9 Unmodified _ILDKIVQKV_ 0 0 0 nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0|FBXO25 nc|ENSG00000147364|Q8TCJ0-3|FBXO25 nc|ENSG00000147364|Q8TCJ0-3|FBXO25 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 353.2432556152344 3 352.56562 1054.67503 0.34964 0.00012327 -0.33293 -0.00011738 0.016708 5.8905E-06 352.56544183256057 88.099 0.59666 84.104 83.765 84.362 -3.9953 34 16 3 0 0 0 0.15889 1 16760 16760 27.129 10.016 1 2237300 20984 4698 13729 13734 20840 20840 0.14988052442208755 ILDKIVQKV 9 Unmodified _ILDKIVQKV_ 0 0 0 nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0|FBXO25 nc|ENSG00000147364|Q8TCJ0-3|FBXO25 nc|ENSG00000147364|Q8TCJ0-3|FBXO25 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 352.56562 1054.67503 -0.34997 -0.00012339 0.28641 0.00010098 -0.063558 -2.2408E-05 352.5657059330933 87.755 0.61705 83.962 83.612 84.229 -3.7926 -0.11001 0.00015512 NaN 27.129 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3193700 20985 4698 13729 13734 0.14988052442208755 ILDKIVQKV 9 Unmodified _ILDKIVQKV_ 0 0 0 nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0|FBXO25 nc|ENSG00000147364|Q8TCJ0-3|FBXO25 nc|ENSG00000147364|Q8TCJ0-3|FBXO25 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 352.56562 1054.67503 -0.51975 -0.00018325 0.46218 0.00016295 -0.057572 -2.0298E-05 352.56573351288074 87.9 0.63235 84.15 83.763 84.396 -3.7501 0.077973 0.00034103 NaN 27.129 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3327000 20986 4698 13729 13734 0.14988052442208755 ILDKKIKDI 9 Unmodified _ILDKKIKDI_ 0 0 0 tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.2377014160156 3 362.569142 1084.6856 -0.23537 -8.5337E-05 0.48459 0.0001757 0.24923 9.0362E-05 362.5692865567029 34.599 0.44427 34.599 34.379 34.823 0 31 12 3 0 0 0 0.15889 1 6349 6349 22.736 0 1 2084100 20987 26130 13730 13735 20841 20841 0.14664035096643602 ILDKKIKDI 9 Unmodified _ILDKKIKDI_ 0 0 0 tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 362.569142 1084.6856 -0.66458 -0.00024096 1.1183 0.00040546 0.45371 0.0001645 362.5694756119578 36.918 0.48634 34.449 34.153 34.639 -2.4688 -0.059295 0.00050199 NaN 22.736 37 13 4 NaN NaN NaN NaN 0 NaN NaN 0 2675700 20988 26130 13730 13735 0.14664035096643602 ILDKKIKDI 9 Unmodified _ILDKKIKDI_ 0 0 0 tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 362.569142 1084.6856 0.11109 4.0277E-05 0.2479 8.9881E-05 0.35899 0.00013016 362.5692062525146 36.864 0.54631 34.516 34.243 34.789 -2.3479 0.0070469 -0.00044475 NaN 22.736 38 15 4 NaN NaN NaN NaN 0 NaN NaN 0 2655700 20989 26130 13730 13735 0.14664035096643602 ILDKKIKDI 9 Unmodified _ILDKKIKDI_ 0 0 0 tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 362.569142 1084.6856 -0.43 -0.0001559 0.77898 0.00028243 0.34898 0.00012653 362.56938045024657 36.808 0.53156 34.471 34.207 34.738 -2.3375 -0.037848 0.00013291 NaN 22.736 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1747100 20990 26130 13730 13735 0.14664035096643602 ILDKKVEKV 9 Unmodified _ILDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5614013671875 3 357.897258 1070.66995 0.19417 6.9492E-05 -0.12999 -4.6521E-05 0.064183 2.2971E-05 357.8978128213974 27.071 4.1639 25.437 25.107 29.271 -1.6347 393 118 6 0 0 0 0.10411 1 4590 4590 75.571 8.8877 1 3721299999.9999995 20991 1874 13731 13736 20842 20842 0.1374374857962266 ILDKKVEKV 9 Unmodified _ILDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5621643066406 3 357.897258 1070.66995 -0.52257 -0.00018703 0.54552 0.00019524 0.022947 8.2128E-06 357.8979670063793 27.239 5.9771 25.317 25.02 30.997 -1.9222 530 170 6 0 0 0 0.0092038 1 4522 4522 54.068 49.591 1 3389499999.9999995 20992 1874 13731 13736 20843 20843 0.1374374857962266 ILDLDNKTL 9 Unmodified _ILDLDNKTL_ 0 0 0 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2796020507812 2 522.800414 1043.58628 0.21677 0.00011333 -0.25707 -0.00013439 -0.040297 -2.1067E-05 522.8003366702379 129.36 1.4072 124.62 124.12 125.53 -4.7408 61 39 3 0 0 0 0.79204 1 25024 25024 7.2892 0.56607 1 4912000 20993 6493 13732 13737 20844 20844 0.06622592411895312 ILDLKPRGV 9 Unmodified _ILDLKPRGV_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.889404296875 3 337.550082 1009.62842 -0.63777 -0.00021528 0.46986 0.0001586 -0.16791 -5.6677E-05 337.8846383579952 85.724 0.65971 81.995 81.615 82.274 -3.7289 36 17 3 0 0 0 0.15889 1 16413 16413 31.728 9.1078 1 2577400 20994 3544 13733 13738 20845 20845 0.12398612610945747 ILDLTPLFSSP 11 Unmodified _ILDLTPLFSSP_ 0 0 0 REV__nc|ENSG00000231213|A0PG75-2|PLSCR5 REV__nc|ENSG00000231213|A0PG75-2|PLSCR5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2763671875 2 601.836997 1201.65944 0.59913 0.00036058 -0.64903 -0.00039061 -0.049895 -3.0029E-05 601.8374254280062 103.22 0.11057 98.871 98.818 98.929 -4.346 4 2 2 0 0 0 0.91954 1 19759 19759 9.3831 0.63772 1 791470 + 20995 24282 13734 13739 20846 20846 0.06667721134522253 ILDLYMLY 8 Unmodified _ILDLYMLY_ 0 0 0 nc|ENSG00000179361|Q8IVW6-3|ARID3B;ENSG00000179361|ENST00000346246|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B;ENST00000448213.2_1_1:81967523-81968357:+|nuORF nc|ENSG00000179361|Q8IVW6-3|ARID3B nc|ENSG00000179361|Q8IVW6-3|ARID3B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2781982421875 2 522.277729 1042.54091 NaN NaN NaN NaN NaN NaN NaN 83.633 1 83.633 83.133 84.133 0 0 0 0 0.17894 1 16306 16306 32.117 5.7757 1 20996 6627 13735 13740 20847 20847 0.021336506251827814 ILDNSPASY 9 Unmodified _ILDNSPASY_ 0 0 0 ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;ENSG00000175215|ENST00000398073|CTDSP2;ENST00000497677.5_1_2:219264813-219268311:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2542419433594 2 490.24019 978.465826 -0.14048 -6.887E-05 0.071501 3.5053E-05 -0.06898 -3.3817E-05 490.2404435706553 66.959 0.49522 66.959 66.698 67.193 0 17 13 2 0 0 0 0.13708 3 12933 12913;12933;12960 46.021 36.393 1 1545800 20997 4560 13736 13741 20848;20849;20850 20849 -0.0242681558172535 ILDNSPASY 9 Unmodified _ILDNSPASY_ 0 0 0 ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;ENSG00000175215|ENST00000398073|CTDSP2;ENST00000497677.5_1_2:219264813-219268311:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2641906738281 2 490.24019 978.465826 0.0006395 3.1351E-07 0.10036 4.9202E-05 0.101 4.9516E-05 490.2402764868987 70.536 0.59964 67.287 67.001 67.601 -3.2492 30 16 2 0 0 0 0.11483 1 13739 13739 37.075 23.46 1 3258900 20998 4560 13736 13741 20851 20851 -0.0242681558172535 ILDNSPASY 9 Unmodified _ILDNSPASY_ 0 0 0 ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;ENSG00000175215|ENST00000398073|CTDSP2;ENST00000497677.5_1_2:219264813-219268311:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2634582519531 2 490.24019 978.465826 0.44611 0.0002187 0.09627 4.7196E-05 0.54238 0.0002659 490.2401453715337 70.906 0.62819 67.326 66.946 67.574 -3.5798 27 17 2 0 0 0 0.51337 1 13401 13401 24.882 15.338 1 1994300 20999 4560 13736 13741 20852 20852 -0.0242681558172535 ILDNSPASY 9 Unmodified _ILDNSPASY_ 0 0 0 ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;ENSG00000175215|ENST00000398073|CTDSP2;ENST00000497677.5_1_2:219264813-219268311:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2746276855469 2 490.24019 978.465826 0.10925 5.3559E-05 0.29048 0.0001424 0.39973 0.00019596 490.2402645867852 70.864 0.67131 67.396 67.06 67.731 -3.467 29 18 2 0 0 0 0.57447 1 13458 13458 14.838 1.3304 1 3040000 21000 4560 13736 13741 20853 20853 -0.0242681558172535 ILDPHVVLL 9 Unmodified _ILDPHVVLL_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 510.8347473144531 2 509.81841 1017.62227 0.10789 5.5006E-05 -0.46819 -0.00023869 -0.3603 -0.00018369 509.81818072591483 165.41 0.37288 160.62 160.47 160.85 -4.7898 20 10 3 0 0 0 0.039907 1 33142 33142 54.068 38.59 1 41753000 21001 2483 13737 13742 20854 20854 0.11416094379421793 ILDPHVVLL 9 Unmodified _ILDPHVVLL_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 509.81841 1017.62227 -0.22678 -0.00011562 0.2001 0.00010201 -0.026682 -1.3603E-05 509.818628031827 165.67 0.31956 160.69 160.49 160.81 -4.9811 0.013664 0.00062794 NaN 54.068 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 28602000 21002 2483 13737 13742 0.11416094379421793 ILDPHVVLL 9 Unmodified _ILDPHVVLL_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 509.81841 1017.62227 0.43395 0.00022124 -0.60918 -0.00031057 -0.17523 -8.9336E-05 509.81798360531343 165.67 0.40788 160.72 160.53 160.94 -4.9484 0.040887 -0.00019723 NaN 54.068 20 11 3 NaN NaN NaN NaN 0 NaN NaN 0 32707000 21003 2483 13737 13742 0.11416094379421793 ILDQTNVSA 9 Unmodified _ILDQTNVSA_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25506591796875 2 480.753464 959.492375 -0.055708 -2.6782E-05 0.30825 0.00014819 0.25254 0.00012141 480.7536263862317 58.145 0.61632 55.234 54.928 55.544 -2.9105 32 17 2 0 0 0 0.34411 1 11178 11178 29.082 3.6823 1 2385300 21004 4960 13738 13743 20855 20855 0.011008733096105061 ILDQTNVSA 9 Unmodified _ILDQTNVSA_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2550964355469 2 480.753464 959.492375 0.037657 1.8104E-05 0.3385 0.00016274 0.37616 0.00018084 480.75362413040494 58.657 0.72718 55.452 55.026 55.753 -3.2052 40 20 3 0 0 0 0.10573 1 10932 10932 53.833 17.327 1 1525700 21005 4960 13738 13743 20856 20856 0.011008733096105061 ILDQTNVSA 9 Unmodified _ILDQTNVSA_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.753464 959.492375 -0.055708 -2.6782E-05 0.30825 0.00014819 0.25254 0.00012141 480.7536263862317 58.145 0.61632 55.234 54.928 55.544 -2.9105 -0.14481 -1.8334E-06 NaN 53.833 32 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2385300 21006 4960 13738 13743 0.011008733096105061 ILDSLHDSGS 10 Unmodified _ILDSLHDSGS_ 0 0 0 REV__ENST00000570205.1_1_15:83226389-83240190:-|nuORF REV__ENST00000570205.1_1_15:83226389-83240190:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2705688476562 2 522.253828 1042.4931 NaN NaN NaN NaN NaN NaN NaN 125.47 1 120.87 120.37 121.37 -4.5984 0 0 0 0.22588 1 24736 24736 10.074 0.72649 1 + 21007 19671 13739 13744 20857 20857 -0.026443320413363836 ILDSVKKKL 9 Unmodified _ILDSVKKKL_ 0 0 0 REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.256591796875 2 522.344792 1042.67503 NaN NaN NaN NaN NaN NaN NaN 125.51 1 120.91 120.41 121.41 -4.5984 0 0 0 0.23508 1 24744 24744 4.756 0.42677 1 + 21008 13356 13740 13745 20858 20858 0.15540052442224805 ILDTSVAYV 9 Unmodified _ILDTSVAYV_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26708984375 2 490.768583 979.522613 0.21068 0.00010339 -0.17803 -8.7373E-05 0.032643 1.602E-05 490.7684731659827 126.45 0.77769 121.83 121.38 122.15 -4.6172 37 21 2 0 0 0 0.04585 1 24924 24924 47.987 33.001 1 6393700 21009 1264 13741 13746 20859 20859 0.03203231974805476 ILDTSVAYV 9 Unmodified _ILDTSVAYV_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640075683594 2 490.768583 979.522613 0.33061 0.00016225 -0.21774 -0.00010686 0.11287 5.5394E-05 490.7684274759382 126.69 0.66159 121.9 121.53 122.2 -4.7958 46 18 3 0 0 0 0.21944 1 24353 24353 22.736 7.898 1 4312300 21010 1264 13741 13746 20860 20860 0.03203231974805476 ILDTSVAYV 9 Unmodified _ILDTSVAYV_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2591247558594 2 490.768583 979.522613 -0.052611 -2.582E-05 0.25026 0.00012282 0.19765 9.6999E-05 490.76870296567756 126.57 0.89589 121.87 121.43 122.32 -4.6998 55 24 3 0 0 0 0.32599 1 24373 24373 44.407 14.182 1 4992400 21011 1264 13741 13746 20861 20861 0.03203231974805476 ILDVRLPKKL 10 Unmodified _ILDVRLPKKL_ 0 0 0 REV__ENST00000594525.5_1_19:48248816-48255954:+|nuORF REV__ENST00000594525.5_1_19:48248816-48255954:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 597.6427001953125 2 597.900266 1193.78598 NaN NaN NaN NaN NaN NaN NaN 169.86 1 165.07 164.57 165.57 -4.7898 0 0 0 0.22588 1 34434 34434 3.5965 0 1 + 21012 14984 13742 13747 20862 20862 0.1968369215032908 ILEEGEKNL 9 Unmodified _ILEEGEKNL_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2798461914062 2 522.782222 1043.54989 0.70015 0.00036603 -0.86075 -0.00044999 -0.1606 -8.3958E-05 522.7816860303719 103.68 0.73936 99.623 99.243 99.983 -4.0543 51 20 4 0 0 0 0.8319 1 19876 19876 7.9102 5.0209 1 4673400 21013 3180 13743 13748 20863 20863 0.029857155152058112 ILEEQLAG 8 Unmodified _ILEEQLAG_ 0 0 0 RFWD3|p.Q268Rfs*80|1|0.08|ENSG00000168411|chr16:74644726-74644726|G/-|frameshift_variant;RFWD3|p.F691Lfs*9|1|0.45|ENSG00000168411|chr16:74626451-74626451|A/-|frameshift_variant;ENSG00000168411|ENST00000361070|RFWD3 RFWD3|p.Q268Rfs*80|1|0.08|ENSG00000168411|chr16:74644726-74644726|G/-|frameshift_variant RFWD3|p.Q268Rfs*80|1|0.08|ENSG00000168411|chr16:74644726-74644726|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22735595703125 2 436.739825 871.465098 0.51307 0.00022408 -0.7228 -0.00031568 -0.20973 -9.1599E-05 436.7395386184852 107.64 0.55988 103.5 103.35 103.91 -4.135 21 15 2 0 0 0 8448 1 20707 20707 1.7423 0 1 930710 21014 5905 13744 13749 20864 20864 0.024223897692422725 ILEKKVEKV 9 Unmodified _ILEKKVEKV_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7719116210938 2 543.350074 1084.6856 0.34845 0.00018933 -0.045622 -2.4789E-05 0.30283 0.00016454 543.3499982788701 22.708 0.66512 22.708 22.466 23.131 0 56 18 5 0 0 0 0.00017214 1 3837 3837 121.5 45.933 1 36619000 21015 1620 13745 13750 20865 20865 0.14664035096643602 ILEKKVEKV 9 Unmodified _ILEKKVEKV_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7780151367188 2 543.350074 1084.6856 1.1796 0.00064094 -0.76333 -0.00041476 0.41627 0.00022618 543.3496075838593 24.276 0.66063 22.723 22.46 23.121 -1.5532 58 18 5 0 0 0 0.041146 1 4232 4232 113.93 95.924 1 46977000 21016 1620 13745 13750 20866 20866 0.14664035096643602 ILEKKVEKV 9 Unmodified _ILEKKVEKV_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.18377685546875 3 362.569142 1084.6856 -9.643E-05 -3.4963E-08 -0.11095 -4.0226E-05 -0.11104 -4.0261E-05 362.5694359363065 24.16 1.2811 22.626 22.328 23.609 -1.5342 121 36 6 0 0 0 0.10537 1 4003 4003 37.075 22.669 1 293670000 21017 1620 13745 13750 20867 20867 0.14664035096643602 ILEKKVEKV 9 Unmodified _ILEKKVEKV_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 362.15716552734375 3 362.569142 1084.6856 0.078389 2.8421E-05 0.089052 3.2288E-05 0.16744 6.0709E-05 362.56913139540086 25.266 0.52162 23.732 23.574 24.095 -1.5342 23 14 2 0 0 0 0.27464 1 4114 4114 29.082 16.841 1 477230 21018 1620 13745 13750 20868 20868 0.14664035096643602 ILEKKVEKV 9 Unmodified _ILEKKVEKV_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7734375 2 543.350074 1084.6856 -0.17917 -9.7351E-05 0.4663 0.00025336 0.28713 0.00015601 543.3502498452683 24.476 0.72021 22.623 22.363 23.084 -1.8534 70 20 5 0 0 0 2.9886E-05 2 3972 3972;4054 132.13 55.31 1 40785000 21019 1620 13745 13750 20869;20870 20869 0.14664035096643602 ILEKKVEKV 9 Unmodified _ILEKKVEKV_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 362.569142 1084.6856 -0.19697 -7.1416E-05 -0.4721 -0.00017117 -0.66907 -0.00024258 362.5685625923506 23.93 0.17086 23.93 23.827 23.998 0 0.098862 -0.00057574 NaN 29.082 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 170060 21020 1620 13745 13750 0.14664035096643602 ILEKKVEKV 9 Unmodified _ILEKKVEKV_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 362.569142 1084.6856 -0.21551 -7.8137E-05 0.23648 8.574E-05 0.02097 7.603E-06 362.56933859066777 22.697 1.1198 22.697 22.432 23.552 0 0.028359 0.00015155 NaN 37.075 96 31 6 NaN NaN NaN NaN 0 NaN NaN 0 175380000 21021 1620 13745 13750 0.14664035096643602 ILEKKVEKV 9 Unmodified _ILEKKVEKV_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 362.569142 1084.6856 0.69884 0.00025338 -0.79838 -0.00028947 -0.099539 -3.609E-05 362.5691175285605 24.281 1.214 22.728 22.392 23.606 -1.5532 0.058881 -0.00097407 NaN 37.075 98 34 5 NaN NaN NaN NaN 0 NaN NaN 0 229500000 21022 1620 13745 13750 0.14664035096643602 ILEKKVEKV 9 Unmodified _ILEKKVEKV_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 362.569142 1084.6856 -0.95023 -0.00034452 0.79901 0.0002897 -0.15121 -5.4826E-05 362.5696905523492 24.477 1.5541 22.624 22.329 23.883 -1.8534 -0.044692 0.00076343 NaN 37.075 143 44 6 NaN NaN NaN NaN 0 NaN NaN 0 209940000 21023 1620 13745 13750 0.14664035096643602 ILEKRQEY 8 Unmodified _ILEKRQEY_ 0 0 0 tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1 tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1 tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 122.1 1 122.1 121.6 122.6 0 0 0 0 0.21486 1 24071 24071 1.8442 0 1 21024 26431 13746 13751 20871 20871 0.0461712798901317 ILELVRNPD 9 Unmodified _ILELVRNPD_ 0 0 0 tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1 tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1 tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5531311035156 3 356.873113 1067.59751 -0.64691 -0.00023086 0.81763 0.00029179 0.17072 6.0926E-05 356.8733411591228 56.929 1.8741 53.753 52.971 54.845 -3.1761 128 52 3 0 0 0 0.5326 1 10731 10731 0.073264 0 1 6391800 21025 26124 13747 13752 20872 20872 0.06641414506043475 ILFFYCQYLY 10 Unmodified _ILFFYCQYLY_ 0 0 0 ENST00000406246.7_1_11:65421647-65421815:-|nuORF ENST00000406246.7_1_11:65421647-65421815:-|nuORF ENST00000406246.7_1_11:65421647-65421815:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2245788574219 3 458.226387 1371.65733 NaN NaN NaN NaN NaN NaN NaN 40.527 1 37.892 37.392 38.392 -2.6348 0 0 0 2.8426 1 7553 7553 0.063865 0 1 21026 9539 13748 13753 20873 20873 -0.013630308749270625 ILFGHENRV 9 Unmodified _ILFGHENRV_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;GNB5|p.T372N|1|0.05|ENSG00000069966|chr15:52124534-52124534|G/T|missense_variant nc|ENSG00000069966|O14775-3|GNB5 nc|ENSG00000069966|O14775-3|GNB5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7872924804688 2 542.79854 1083.58253 0.020395 1.107E-05 0.18444 0.00010012 0.20484 0.00011119 542.798595682835 63.069 0.63229 63.069 62.803 63.435 0 42 17 3 0 0 0 0.069179 1 12101 12101 43.982 30.367 1 7855200 21027 1421 13749 13754 20874 20874 0.04407967428710435 ILFGHENRV 9 Unmodified _ILFGHENRV_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;GNB5|p.T372N|1|0.05|ENSG00000069966|chr15:52124534-52124534|G/T|missense_variant nc|ENSG00000069966|O14775-3|GNB5 nc|ENSG00000069966|O14775-3|GNB5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.786376953125 2 542.79854 1083.58253 0.22053 0.0001197 0.06793 3.6872E-05 0.28846 0.00015658 542.7984655793332 66.162 0.86112 63.115 62.611 63.472 -3.047 53 24 3 0 0 0 0.058839 2 12814 12814;12815 59.368 53.177 1 6417100 21028 1421 13749 13754 20875;20876 20875 0.04407967428710435 ILFGHENRV 9 Unmodified _ILFGHENRV_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;GNB5|p.T372N|1|0.05|ENSG00000069966|chr15:52124534-52124534|G/T|missense_variant nc|ENSG00000069966|O14775-3|GNB5 nc|ENSG00000069966|O14775-3|GNB5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7885131835938 2 542.79854 1083.58253 0.28227 0.00015322 -0.044069 -2.3921E-05 0.2382 0.00012929 542.7983654465171 66.566 0.69201 63.07 62.627 63.319 -3.4965 43 19 3 0 0 0 0.50419 1 12481 12481 19.362 2.249 1 5428200 21029 1421 13749 13754 20877 20877 0.04407967428710435 ILFGHENRV 9 Unmodified _ILFGHENRV_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;GNB5|p.T372N|1|0.05|ENSG00000069966|chr15:52124534-52124534|G/T|missense_variant nc|ENSG00000069966|O14775-3|GNB5 nc|ENSG00000069966|O14775-3|GNB5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.79854 1083.58253 0.28227 0.00015322 -0.044069 -2.3921E-05 0.2382 0.00012929 542.7983654465171 66.566 0.69201 63.07 62.627 63.319 -3.4965 0.011667 -0.00010073 NaN 59.368 43 19 3 NaN NaN NaN NaN 0 NaN NaN 0 5428200 21030 1421 13749 13754 0.04407967428710435 ILFGHENRV 9 Unmodified _ILFGHENRV_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;GNB5|p.T372N|1|0.05|ENSG00000069966|chr15:52124534-52124534|G/T|missense_variant nc|ENSG00000069966|O14775-3|GNB5 nc|ENSG00000069966|O14775-3|GNB5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.79854 1083.58253 0.39995 0.00021709 -0.049196 -2.6704E-05 0.35075 0.00019039 542.7983670899133 66.261 0.73549 62.978 62.65 63.386 -3.2832 -0.080075 -0.0001063 NaN 59.368 60 20 4 NaN NaN NaN NaN 0 NaN NaN 0 7494200 21031 1421 13749 13754 0.04407967428710435 ILFKRFWWRHY 11 Unmodified _ILFKRFWWRHY_ 0 0 0 ENST00000354179.8_2_5:176671236-176673694:+|nuORF ENST00000354179.8_2_5:176671236-176673694:+|nuORF ENST00000354179.8_2_5:176671236-176673694:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 551.06884765625 3 551.305134 1650.89357 0.12705 7.0043E-05 1.4411 0.00079449 1.5682 0.00086453 551.9746930063134 144.55 0.31175 139.48 139.25 139.56 -5.0671 16 8 3 0 0 0 0.96214 1 27904 27904 1.4551 1.3603 1 5536300 21032 8937 13750 13755 20878 20878 0.09416081804397436 ILFVSSRKH 9 Unmodified _ILFVSSRKH_ 0 0 0 nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1;nc|ENSG00000165181|Q5VXU9-2|SHOC1 nc|ENSG00000165181|Q5VXU9-3|SHOC1 nc|ENSG00000165181|Q5VXU9-3|SHOC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.789794921875 2 543.824558 1085.63456 0.42788 0.00023269 2.5835 0.001405 3.0114 0.0016377 544.3286550677 164.64 0.17429 159.85 159.75 159.92 -4.7898 7 4 2 0 0 0 0.34815 1 32903 32903 8.1555 4.8447 1 4776000 21033 12429 13751 13756 20879 20879 0.09517130842482402 ILFVWVVLY 9 Unmodified _ILFVWVVLY_ 0 0 0 REV__nc|ENSG00000083454|Q93086-2|P2RX5 REV__nc|ENSG00000083454|Q93086-2|P2RX5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3241577148438 2 576.346803 1150.67905 NaN NaN NaN NaN NaN NaN NaN 157.01 1 151.74 151.24 152.24 -5.2712 0 0 0 0.23508 1 30457 30457 9.3474 1.4373 1 + 21034 14451 13752 13757 20880 20880 0.1097414193595796 ILFYFDIVFTT 11 Unmodified _ILFYFDIVFTT_ 0 0 0 nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;CACNA1C|p.E1194Gfs*8|1|0.17|ENSG00000151067|chr12:2608669-2608670|-/G|frameshift_variant;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C nc|ENSG00000151067|Q13936-2|CACNA1C nc|ENSG00000151067|Q13936-2|CACNA1C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2479248046875 3 460.247957 1377.72204 NaN NaN NaN NaN NaN NaN NaN 179.37 1 174.58 174.08 175.08 -4.7898 0 0 0 0.23698 1 36701 36701 0 0 1 21035 359 13753 13758 20881 20881 0.04828867202672882 ILFYVNVNWKF 11 Unmodified _ILFYVNVNWKF_ 0 0 0 L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|72|3|anti-sense L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|72|3|anti-sense L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|72|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7739562988281 3 481.599212 1441.77581 NaN NaN NaN NaN NaN NaN NaN 71.127 1 67.878 67.378 68.378 -3.2492 0 0 0 0.22632 1 13846 13846 0.03141 0 1 21036 12024 13754 13759 20882 20882 0.07259084425049878 ILGLQSDCQFH 11 Unmodified _ILGLQSDCQFH_ 0 0 0 ENST00000562965.1_1_15:74212002-74212287:-|nuORF ENST00000562965.1_1_15:74212002-74212287:-|nuORF ENST00000562965.1_1_15:74212002-74212287:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7706298828125 2 630.805705 1259.59686 NaN NaN NaN NaN NaN NaN NaN 96.419 1 92.334 91.834 92.834 -4.0851 0 0 0 0.22501 1 18908 18908 12.241 0.74595 1 21037 11325 13755 13760 20883 20883 -0.022557482053116473 ILGPKPQGV 9 Unmodified _ILGPKPQGV_ 0 0 0 ENSG00000164073|ENST00000641686|MFSD8 ENSG00000164073|ENST00000641686|MFSD8 ENSG00000164073|ENST00000641686|MFSD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 455.795166015625 2 454.781828 907.549102 0.10334 4.6995E-05 0.42099 0.00019146 0.52433 0.00023845 454.7818328072421 56.023 0.70443 56.023 55.656 56.36 0 50 19 3 0 0 0 0.45972 1 10724 10724 10.016 1.8607 1 9859900 21038 5502 13756 13761 20884 20884 0.09162965656810229 ILGPKPQGV 9 Unmodified _ILGPKPQGV_ 0 0 0 ENSG00000164073|ENST00000641686|MFSD8 ENSG00000164073|ENST00000641686|MFSD8 ENSG00000164073|ENST00000641686|MFSD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 455.2392883300781 2 454.781828 907.549102 0.032531 1.4794E-05 0.35029 0.0001593 0.38282 0.0001741 454.7818799978316 59.35 0.99065 56.036 55.39 56.381 -3.3139 59 27 4 0 0 0 0.45972 1 10985 10985 8.1555 8.1555 1 9648800 21039 5502 13756 13761 20885 20885 0.09162965656810229 ILGPKPQGV 9 Unmodified _ILGPKPQGV_ 0 0 0 ENSG00000164073|ENST00000641686|MFSD8 ENSG00000164073|ENST00000641686|MFSD8 ENSG00000164073|ENST00000641686|MFSD8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 454.781828 907.549102 0.10334 4.6995E-05 0.42099 0.00019146 0.52433 0.00023845 454.7818328072421 56.023 0.70443 56.023 55.656 56.36 0 -0.022854 1.537E-05 NaN 10.016 50 19 3 NaN NaN NaN NaN 0 NaN NaN 0 9859900 21040 5502 13756 13761 0.09162965656810229 ILGPKPQGV 9 Unmodified _ILGPKPQGV_ 0 0 0 ENSG00000164073|ENST00000641686|MFSD8 ENSG00000164073|ENST00000641686|MFSD8 ENSG00000164073|ENST00000641686|MFSD8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 454.781828 907.549102 -0.16387 -7.4524E-05 0.61235 0.00027848 0.44848 0.00020396 454.7819778872851 58.972 0.94727 56.062 55.475 56.422 -2.9105 0.015491 0.00018942 NaN 10.016 62 26 4 NaN NaN NaN NaN 0 NaN NaN 0 12344000 21041 5502 13756 13761 0.09162965656810229 ILGPKPQGV 9 Unmodified _ILGPKPQGV_ 0 0 0 ENSG00000164073|ENST00000641686|MFSD8 ENSG00000164073|ENST00000641686|MFSD8 ENSG00000164073|ENST00000641686|MFSD8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 454.781828 907.549102 0.083862 3.8139E-05 0.24714 0.00011239 0.331 0.00015053 454.78183854662575 59.287 0.94501 56.064 55.451 56.396 -3.2225 0.017844 -0.00014276 NaN 10.016 58 26 3 NaN NaN NaN NaN 0 NaN NaN 0 9696000 21042 5502 13756 13761 0.09162965656810229 ILGVCQDCL 9 Unmodified _ILGVCQDCL_ 0 0 0 ENSG00000176979|ENST00000512596|TRIM60 ENSG00000176979|ENST00000512596|TRIM60 ENSG00000176979|ENST00000512596|TRIM60 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7692565917969 2 482.235538 962.456524 NaN NaN NaN NaN NaN NaN NaN 117.02 1 112.44 111.94 112.94 -4.5815 0 0 0 0.22251 1 22453 22453 16.942 0 1 21043 6491 13757 13762 20886 20886 -0.026206234632468295 ILHDKRAKN 9 Unmodified _ILHDKRAKN_ 0 0 0 REV__nc|ENSG00000122299|Q8IWR0-2|ZC3H7A REV__nc|ENSG00000122299|Q8IWR0-2|ZC3H7A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7887573242188 2 547.825089 1093.63563 0.33393 0.00018293 2.5838 0.0014155 2.9177 0.0015984 547.8267352097065 101.28 0.50755 96.981 96.669 97.176 -4.297 20 14 2 0 0 0 0.66788 1 19378 19378 29.082 4.4077 1 1267300 + 21044 15684 13758 13763 20887 20887 0.0925534521136342 ILHELISEL 9 Unmodified _ILHELISEL_ 0 0 0 REV__ENST00000537553.5_1_12:30863433-30867904:-|nuORF REV__ENST00000537553.5_1_12:30863433-30867904:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2869262695312 2 533.810782 1065.60701 0.50452 0.00026932 -0.47615 -0.00025418 0.028363 1.514E-05 533.8104946389032 154.36 0.8712 149.07 148.66 149.53 -5.2854 46 24 3 0 0 0 0.029847 1 29940 29940 112.59 2.9639 1 3287000 + 21045 22825 13759 13764 20888 20888 0.07683182791561194 ILHELISEL 9 Unmodified _ILHELISEL_ 0 0 0 REV__ENST00000537553.5_1_12:30863433-30867904:-|nuORF REV__ENST00000537553.5_1_12:30863433-30867904:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2656860351562 2 533.810782 1065.60701 0.44749 0.00023888 0.093506 4.9915E-05 0.541 0.00028879 533.8106001538629 154.34 0.73645 149.12 148.76 149.5 -5.2209 49 20 4 0 0 0 0.029847 1 29914 29914 112.59 2.9639 1 2797400 + 21046 22825 13759 13764 20889 20889 0.07683182791561194 ILHELISEL 9 Unmodified _ILHELISEL_ 0 0 0 REV__ENST00000537553.5_1_12:30863433-30867904:-|nuORF REV__ENST00000537553.5_1_12:30863433-30867904:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 533.810782 1065.60701 0.21871 0.00011675 -0.20026 -0.0001069 0.018451 9.8494E-06 533.8107162095913 153.7 0.85037 148.93 148.55 149.4 -4.7684 -0.11177 -6.369E-07 NaN 112.59 40 23 3 NaN NaN NaN NaN 0 NaN NaN 0 3935400 + 21047 22825 13759 13764 0.07683182791561194 ILHRKIDEV 9 Unmodified _ILHRKIDEV_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.208251953125 3 374.892507 1121.65569 -0.169 -6.3356E-05 -0.012042 -4.5146E-06 -0.18104 -6.787E-05 374.89239853862995 30.921 0.35128 28.847 28.71 29.061 -2.0743 22 9 3 0 0 0 0.45972 1 5304 5304 8.1555 7.9487 1 986850 21048 3370 13760 13765 20890 20890 0.09973096151315985 ILHRKIDEV 9 Unmodified _ILHRKIDEV_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.892507 1121.65569 0.14685 5.5051E-05 -0.46754 -0.00017528 -0.3207 -0.00012023 374.8923405811168 30.996 0.42457 28.879 28.645 29.07 -2.1167 0.038614 -0.00014322 NaN 8.1555 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 965290 21049 3370 13760 13765 0.09973096151315985 ILIKEKLLLHQ 11 Unmodified _ILIKEKLLLHQ_ 0 0 0 REV__FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant REV__FANCB|p.I419Lfs*7|1|0.08|ENSG00000181544|chrX:14853110-14853111|-/TATTTAAATTGGAATATTAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.2442321777344 3 449.962262 1346.86496 0.13712 6.1699E-05 -1.2577 -0.00056592 -1.1206 -0.00050422 449.96156182021076 26.987 0.35117 25.352 25.247 25.598 -1.6347 15 9 2 0 0 0 0.81736 1 4489 4489 1.3296 0.21989 1 3099700 + 21050 23521 13761 13766 20891 20891 0.2053991938460058 ILILKYIKKL 10 Unmodified _ILILKYIKKL_ 0 0 0 tr|U7T051|U7T051_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00728PE=3SV=1 tr|U7T051|U7T051_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00728PE=3SV=1 tr|U7T051|U7T051_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00728PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7803955078125 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 156.05 1 151.27 150.77 151.77 -4.7791 0 0 0 0.22588 1 31025 31025 1.6526 0.17072 1 21051 26309 13762 13767 20892 20892 0.2509891036663703 ILILYYKIYR 10 Unmodified _ILILYYKIYR_ 0 0 0 HTR1F|p.F310Lfs*2|2|0.41|ENSG00000179097|chr3:87991673-87991673|T/-|frameshift_variant;HTR1F|p.L332Wfs*11|1|0.39|ENSG00000179097|chr3:87991739-87991739|T/-|frameshift_variant;ENSG00000179097|ENST00000319595|HTR1F HTR1F|p.F310Lfs*2|2|0.41|ENSG00000179097|chr3:87991673-87991673|T/-|frameshift_variant HTR1F|p.F310Lfs*2|2|0.41|ENSG00000179097|chr3:87991673-87991673|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76507568359375 3 453.279591 1356.81694 NaN NaN NaN NaN NaN NaN NaN 15.372 1 14.15 13.65 14.65 -1.2219 0 0 0 2.8426 1 2148 2148 0 0 1 21052 6610 13763 13768 20893 20893 0.1528084546455375 ILIPRVWR 8 Unmodified _ILIPRVWR_ 0 0 0 AMBP|p.R204W|1|0.27|ENSG00000106927|chr9:114062752-114062752|G/A|missense_variant AMBP|p.R204W|1|0.27|ENSG00000106927|chr9:114062752-114062752|G/A|missense_variant AMBP|p.R204W|1|0.27|ENSG00000106927|chr9:114062752-114062752|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 527.1450805664062 2 526.840011 1051.66547 0.14975 7.8892E-05 -1.263 -0.00066542 -1.1133 -0.00058653 526.839290318309 139.9 0.93817 139.9 139.4 140.34 0 57 26 3 0 0 0 0.35364 1 27744 27744 13.615 0 1 19420000 21053 144 13764 13769 20894 20894 0.14170328947352573 ILIWFVFI 8 Unmodified _ILIWFVFI_ 0 0 0 ENST00000483821.1_1_6:33162461-33163032:-|nuORF ENST00000483821.1_1_6:33162461-33163032:-|nuORF ENST00000483821.1_1_6:33162461-33163032:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 525.7660522460938 2 525.822964 1049.63138 NaN NaN NaN NaN NaN NaN NaN 138.82 1 133.98 133.48 134.48 -4.8492 0 0 0 0.22722 1 26761 26761 0.68139 0.27313 1 21054 10421 13765 13770 20895 20895 0.10854487735741714 ILIYVLLSI 9 Unmodified _ILIYVLLSI_ 0 0 0 tr|U7STR4|U7STR4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01158PE=4SV=1 tr|U7STR4|U7STR4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01158PE=4SV=1 tr|U7STR4|U7STR4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01158PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6989135742188 2 523.846636 1045.67872 -0.32569 -0.00017061 0.95478 0.00050016 0.62908 0.00032954 524.3484088709507 163.39 0.10754 158.35 158.27 158.37 -5.0446 4 2 2 0 0 0 0.66537 1 31800 31800 8.5933 0 1 4966400 21055 26166 13766 13771 20896 20896 0.15770722216097965 ILKFYGDIEY 10 Unmodified _ILKFYGDIEY_ 0 0 0 REV__tr|U7SYJ2|U7SYJ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00899PE=4SV=1 REV__tr|U7SYJ2|U7SYJ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00899PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.778564453125 2 630.829172 1259.64379 NaN NaN NaN NaN NaN NaN NaN 130.05 1 125.41 124.91 125.91 -4.6359 0 0 0 0.22588 1 25629 25629 7.2892 0.56607 1 + 21056 25231 13767 13772 20897 20897 0.024354346174959574 ILKIKPIPV 9 Unmodified _ILKIKPIPV_ 0 0 0 REV__RGPD4|p.R329I|1|0.16|ENSG00000196862|chr2:107854563-107854563|G/T|missense_variant REV__RGPD4|p.R329I|1|0.16|ENSG00000196862|chr2:107854563-107854563|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 510.86187744140625 2 510.862621 1019.71069 NaN NaN NaN NaN NaN NaN NaN 11.616 1 10.712 10.212 11.212 -0.90401 0 0 0 0.23508 1 1551 1551 0 0 1 + 21057 24546 13768 13773 20898 20898 0.2016213468987189 ILKILITF 8 Unmodified _ILKILITF_ 0 0 0 nc|ENSG00000174844|Q6ZR08|DNAH12 nc|ENSG00000174844|Q6ZR08|DNAH12 nc|ENSG00000174844|Q6ZR08|DNAH12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25469970703125 2 480.828246 959.64194 0.22407 0.00010774 0.28706 0.00013803 0.51113 0.00024577 480.82834585061596 98.599 0.48945 94.33 94.121 94.61 -4.2692 19 13 2 0 0 0 1.0249 1 18879 18879 5.7604 2.8712 1 1403500 21058 12472 13769 13774 20899 20899 0.16050470390177907 ILKKIKLCK 9 Unmodified _ILKKIKLCK_ 0 0 0 ENST00000576948.5_1_12:9787271-9806302:+|nuORF ENST00000576948.5_1_12:9787271-9806302:+|nuORF ENST00000576948.5_1_12:9787271-9806302:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.66845703125 2 543.875205 1085.73586 0.34184 0.00018592 -0.95705 -0.00052052 -0.61521 -0.0003346 544.3758707567903 156.74 0.1389 156.74 156.69 156.83 0 5 3 2 0 0 0 0.88312 1 31437 31437 0.45834 0 1 981570 21059 11464 13770 13775 20900 20900 0.1964186622080888 ILKNLCVEL 9 Unmodified _ILKNLCVEL_ 0 0 0 PRAMEF5|p.R417Pfs*5|1|0.29|ENSG00000270601|chr1:13262923-13262924|-/C|frameshift_variant;ENSG00000270601|ENST00000622421|PRAMEF5;ENSG00000232423|ENST00000376189|PRAMEF6;ENSG00000243073|ENST00000235349|PRAMEF4;ENSG00000204501|ENST00000376152|PRAMEF15 PRAMEF5|p.R417Pfs*5|1|0.29|ENSG00000270601|chr1:13262923-13262924|-/C|frameshift_variant PRAMEF5|p.R417Pfs*5|1|0.29|ENSG00000270601|chr1:13262923-13262924|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.280029296875 2 522.809728 1043.6049 -0.49413 -0.00025834 1.1636 0.00060834 0.66947 0.00035 522.8101587843495 97.597 0.23604 93.363 93.156 93.392 -4.2348 9 6 2 0 0 0 0.77732 1 18603 18603 7.9102 0 1 565100 21060 7584 13771 13776 20901 20901 0.08484430782095842 ILKRHRPY 8 Unmodified _ILKRHRPY_ 0 0 0 REV__ENSG00000100350|ENST00000397224|FOXRED2 REV__ENSG00000100350|ENST00000397224|FOXRED2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2784423828125 2 541.832717 1081.65088 0.46747 0.00025329 4.0334 0.0021854 4.5009 0.0024387 541.8343507871429 153.45 0.20871 148.23 148.07 148.28 -5.2209 7 5 2 0 0 0 0.89147 1 29716 29716 0.25148 0 1 973980 + 21061 14698 13772 13777 20902 20902 0.11332256799209972 ILKWLGKF 8 Unmodified _ILKWLGKF_ 0 0 0 REV__LRRTM4|p.R157W|1|0.23|ENSG00000176204|chr2:77519400-77519400|G/A|missense_variant REV__LRRTM4|p.R157W|1|0.23|ENSG00000176204|chr2:77519400-77519400|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.55340576171875 3 335.547901 1003.62187 NaN NaN NaN NaN NaN NaN NaN 5.7545 1 5.7545 5.2545 6.2545 0 0 0 0 0.2396 1 348 348 0.30703 0.10017 1 + 21062 23823 13773 13778 20903 20903 0.12020719450219985 ILKWLNEY 8 Unmodified _ILKWLNEY_ 0 0 0 REV__ENST00000420610.1_1_Y:14088999-14090148:+|nuORF REV__ENST00000420610.1_1_Y:14088999-14090148:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015380859375 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 91.333 1 87.239 86.739 87.739 -4.0946 0 0 0 0.21486 1 17404 17404 3.9444 0.3479 1 + 21063 21504 13774 13779 20904 20904 0.05019217482708882 ILKWRKQQNEV 11 Unmodified _ILKWRKQQNEV_ 0 0 0 ENSG00000137814|ENST00000260372|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2;nc|ENSG00000137814|Q9NVX0-2|HAUS2 ENSG00000137814|ENST00000260372|HAUS2 ENSG00000137814|ENST00000260372|HAUS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2800598144531 3 481.280654 1440.82013 NaN NaN NaN NaN NaN NaN NaN 78.332 1 74.869 74.369 75.369 -3.4633 0 0 0 0.22632 1 15295 15295 0.172 0 1 21064 4114 13775 13780 20905 20905 0.11735488571252972 ILLALRLARL 10 Unmodified _ILLALRLARL_ 0 0 0 REV__nc|ENSG00000293505|Q96P88|GNRHR2 REV__nc|ENSG00000293505|Q96P88|GNRHR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3324584960938 2 576.402976 1150.7914 0.29911 0.00017241 2.0755 0.0011963 2.3746 0.0013687 576.4052354905614 147.09 0.21164 147.09 146.91 147.12 0 7 5 2 0 0 0 0.53419 1 29426 29426 0.13989 0 1 1541300 + 21065 24331 13776 13781 20906 20906 0.22203415732769827 ILLALRLARL 10 Unmodified _ILLALRLARL_ 0 0 0 REV__nc|ENSG00000293505|Q96P88|GNRHR2 REV__nc|ENSG00000293505|Q96P88|GNRHR2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.402976 1150.7914 0.29911 0.00017241 2.0755 0.0011963 2.3746 0.0013687 576.4052354905614 147.09 0.21164 147.09 146.91 147.12 0 0 0 NaN 0.13989 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1541300 + 21066 24331 13776 13781 0.22203415732769827 ILLCNSHEH 9 Unmodified _ILLCNSHEH_ 0 0 0 REV__ENSG00000198874|ENST00000359626|TYW1 REV__ENSG00000198874|ENST00000359626|TYW1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2642211914062 2 533.260933 1064.50731 NaN NaN NaN NaN NaN NaN NaN 130.52 1 130.52 130.02 131.02 0 0 0 0 0.21848 1 25797 25797 18.135 0 1 + 21067 19469 13777 13782 20907 20907 -0.022359580940246815 ILLCNSHEH 9 Unmodified _ILLCNSHEH_ 0 0 0 REV__ENSG00000198874|ENST00000359626|TYW1 REV__ENSG00000198874|ENST00000359626|TYW1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.262451171875 2 533.260933 1064.50731 NaN NaN NaN NaN NaN NaN NaN 134.99 1 130.35 129.85 130.85 -4.6399 0 0 0 0.23411 1 26622 26622 13.508 4.1248 1 + 21068 19469 13777 13782 20908 20908 -0.022359580940246815 ILLDNDHYAM 10 Unmodified _ILLDNDHYAM_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.301025390625 2 602.786981 1203.55941 0.4074 0.00024558 -0.15892 -9.5792E-05 0.24848 0.00014978 602.7868798021699 111.09 0.73534 111.09 110.68 111.41 0 48 20 3 0 0 0 0.87565 1 21797 21797 15.248 1.3424 1 8517500 21069 2153 13778 13783 20909 20909 -0.03422839470931649 ILLDNDHYAM 10 Unmodified _ILLDNDHYAM_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3001708984375 2 602.786981 1203.55941 0.59429 0.00035823 -0.37987 -0.00022898 0.21442 0.00012925 602.7868197961623 115.54 0.88652 111.22 110.76 111.64 -4.3135 57 24 3 0 0 0 0.0010399 1 22244 22244 137.42 85.155 1 12268000 21070 2153 13778 13783 20910 20910 -0.03422839470931649 ILLDNDHYAM 10 Unmodified _ILLDNDHYAM_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 602.786981 1203.55941 1.0362 0.00062464 -0.76696 -0.00046231 0.26929 0.00016232 602.7865441352659 115.67 0.78905 111.19 110.78 111.56 -4.4726 0.018825 -0.00036622 NaN 137.42 56 22 3 NaN NaN NaN NaN 0 NaN NaN 0 16746000 21071 2153 13778 13783 -0.03422839470931649 ILLFRRPL 8 Unmodified _ILLFRRPL_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B ENSG00000123975|ENST00000314355|CKS2;ENST00000477676.6_1_1:154947554-154951250:+|nuORF ENSG00000123975|ENST00000314355|CKS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.2315368652344 3 343.230683 1026.67022 NaN NaN NaN NaN NaN NaN NaN 25.588 1 25.588 25.088 26.088 0 0 0 0 0.23538 1 4448 4448 0.063987 0 1 21072 3285;6274 13779 13784 20911 20911 0.15795213090132165 ILLHLESEL 9 Unmodified _ILLHLESEL_ 0 0 0 ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF ENST00000549078.5_1_12:53344429-53346127:+|nuORF ENST00000549078.5_1_12:53344429-53346127:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2736206054688 2 533.810782 1065.60701 0.1208 6.4485E-05 -0.023413 -1.2498E-05 0.097388 5.1987E-05 533.8108317462791 149.34 0.66728 149.34 149.03 149.7 0 26 18 2 0 0 0 0.091177 1 29935 29935 70.716 13.244 1 3328400 21073 2602 13780 13785 20912 20912 0.07683182791583931 ILLIVLLTHLL 11 Unmodified _ILLIVLLTHLL_ 0 0 0 nc|ENSG00000138613|Q8WW43-2|APH1B;ENSG00000138613|ENST00000261879|APH1B nc|ENSG00000138613|Q8WW43-2|APH1B nc|ENSG00000138613|Q8WW43-2|APH1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7730102539062 2 630.936317 1259.85808 NaN NaN NaN NaN NaN NaN NaN 118.96 1 114.35 113.85 114.85 -4.6106 0 0 0 0.22632 1 22828 22828 0.094841 0.094841 1 21074 4186 13781 13786 20913 20913 0.23854606504050935 ILLKSRKMKK 10 Unmodified _ILLKSRKMKK_ 0 0 0 REV__ENST00000536889.1_1_X:102564780-102564858:-|nuORF REV__ENST00000536889.1_1_X:102564780-102564858:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7669677734375 2 622.915393 1243.81623 NaN NaN NaN NaN NaN NaN NaN 144.58 1 139.91 139.41 140.41 -4.6694 0 0 0 2.8426 1 28635 28635 0.26539 0.093389 1 + 21075 22818 13782 13787 20914 20914 0.2040772754385216 ILLLVTAW 8 Unmodified _ILLLVTAW_ 0 0 0 REV__ENSG00000175077|ENST00000312295|RTP1 REV__ENSG00000175077|ENST00000312295|RTP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 140.33 1 135.47 134.97 135.97 -4.8615 0 0 0 0.2386 1 27058 27058 0.62683 0.50396 1 + 21076 18451 13783 13788 20915 20915 0.11265324321971093 ILLPKKTKF 9 Unmodified _ILLPKKTKF_ 0 0 0 REV__ENSG00000119820|ENST00000238831|YIPF4 REV__ENSG00000119820|ENST00000238831|YIPF4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7847290039062 2 544.365527 1086.7165 0.075372 4.103E-05 0.14918 8.1207E-05 0.22455 0.00012224 544.3654401481006 95.549 0.48448 91.668 91.403 91.888 -3.881 14 13 2 0 0 0 0.86532 1 18310 18310 2.0598 1.4583 1 1794100 + 21077 15598 13784 13789 20916 20916 0.1766123320155657 ILLPLILSDP 10 Unmodified _ILLPLILSDP_ 0 0 0 REV__nc|ENSG00000157554|P11308-6|ERG REV__nc|ENSG00000157554|P11308-6|ERG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7673950195312 2 547.347 1092.67945 0.20503 0.00011222 2.3925 0.0013095 2.5976 0.0014218 547.3468292394183 136.27 0.21043 131.63 131.53 131.74 -4.6399 6 5 2 0 0 0 0.871 1 26881 26881 10.074 4.8433 1 755810 + 21078 21998 13785 13790 20917 20917 0.13681516865153753 ILLQFTESL 9 Unmodified _ILLQFTESL_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2767333984375 2 532.305332 1062.59611 0.9732 0.00051804 -1.0683 -0.00056865 -0.095075 -5.0609E-05 532.3047504684738 120.19 1.1326 115.54 114.81 115.94 -4.645 93 31 4 0 0 0 0.64382 1 22974 22974 10.074 2.1638 1 19534000 + 21079 19354 13786 13791 20918 20918 0.0673178041729443 ILLREISLW 9 Unmodified _ILLREISLW_ 0 0 0 ENST00000418766.5_2_21:38445728-38459609:+|nuORF;ENST00000355666.5_1_21:38445580-38459609:+|nuORF ENST00000418766.5_2_21:38445728-38459609:+|nuORF ENST00000418766.5_2_21:38445728-38459609:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 571.8514404296875 2 571.850242 1141.68593 NaN NaN NaN NaN NaN NaN NaN 139.48 1 139.48 138.98 139.98 0 0 0 0 0.19679 1 27726 27726 1.2148 0 1 21080 8959 13787 13792 20919 20919 0.12075454816522324 ILLRGDLY 8 Unmodified _ILLRGDLY_ 0 0 0 REV__nc|ENSG00000110756|Q9UPZ3-2|HPS5 REV__nc|ENSG00000110756|Q9UPZ3-2|HPS5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7873840332031 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 112.55 1 108.02 107.52 108.52 -4.5259 0 0 0 0.21181 1 21602 21602 15.768 0 1 + 21081 15216 13788 13793 20920 20920 0.07734948311235712 ILLRQMFEPV 10 Unmodified _ILLRQMFEPV_ 0 0 0 ENST00000595115.1_1_19:44030583-44031338:-|nuORF;ENSG00000105755|ENST00000292147|ETHE1 ENST00000595115.1_1_19:44030583-44031338:-|nuORF ENST00000595115.1_1_19:44030583-44031338:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7645874023438 2 623.354834 1244.69511 0.63137 0.00039357 -2.5505 -0.0015899 -1.9191 -0.0011963 623.3513258575455 89.408 0.10636 85.363 85.31 85.417 -4.0443 4 2 2 0 0 0 1.1302 1 17029 17029 0.26539 0.23398 1 508360 21082 2340 13789 13794 20921 20921 0.08255480110528879 ILLTLDGRVKL 11 Unmodified _ILLTLDGRVKL_ 0 0 0 nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6 nc|ENSG00000137843|Q9NQU5-2|PAK6 nc|ENSG00000137843|Q9NQU5-2|PAK6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 414.2697448730469 3 414.271096 1239.79146 NaN NaN NaN NaN NaN NaN NaN 66.692 1 63.195 62.695 63.695 -3.4965 0 0 0 0.22632 1 12504 12504 0.03141 0 1 21083 4120 13790 13795 20922 20922 0.18115370942132358 ILLVGVVLLIK 11 Unmodified _ILLVGVVLLIK_ 0 0 0 tr|U7SQW5|U7SQW5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01827PE=4SV=1 tr|U7SQW5|U7SQW5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01827PE=4SV=1 tr|U7SQW5|U7SQW5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01827PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2549438476562 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 75.693 1 72.06 71.56 72.56 -3.6337 0 0 0 0.22632 1 14392 14392 0.094841 0.094841 1 21084 26068 13791 13796 20923 20923 0.2543522147532258 ILLVLRKLIY 10 Unmodified _ILLVLRKLIY_ 0 0 0 REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1 REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7559204101562 2 622.428659 1242.84277 NaN NaN NaN NaN NaN NaN NaN 118.75 1 118.75 118.25 119.25 0 0 0 0 0.22588 1 23390 23390 4.3292 0.73274 1 + 21085 24998 13792 13797 20924 20924 0.23105739706852546 ILMEHIHKL 9 Oxidation (M) _ILM(Oxidation (M))EHIHKL_ ILM(1)EHIHKL ILM(50)EHIHKL 0 0 1 ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19 ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3299560546875 2 575.326076 1148.6376 0.58612 0.00033721 1.8792 0.0010812 2.4653 0.0014184 575.3257822591646 44.8 1.1541 44.8 44.189 45.343 0 71 32 3 0 0 0 0.11717 1 8452 8452 49.933 26.785 1 7859900 21086 9801 13793 13798 20925 20925 112 0.06922637904949624 ILMEHIHKL 9 Oxidation (M) _ILM(Oxidation (M))EHIHKL_ 0 0 1 ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19 ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 575.326076 1148.6376 0.092494 5.3214E-05 -0.0021901 -1.26E-06 0.090304 5.1954E-05 575.326059449162 47.727 0.88002 44.785 44.511 45.391 -2.9421 -0.076455 -0.00018503 NaN 49.933 42 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2979500 21087 9801 13793 13798 112 0.06922637904949624 ILMEHIHKL 9 Oxidation (M) _ILM(Oxidation (M))EHIHKL_ 0 0 1 ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19 ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.326076 1148.6376 -0.079044 -4.5476E-05 0.20462 0.00011772 0.12557 7.2246E-05 575.3261744452442 47.948 0.86201 44.998 44.433 45.295 -2.9499 0.13712 5.2939E-05 NaN 49.933 46 24 2 NaN NaN NaN NaN 0 NaN NaN 0 5735000 21088 9801 13793 13798 112 0.06922637904949624 ILMEHIHKLKA 11 Unmodified _ILMEHIHKLKA_ 0 0 0 ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19 ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.1231994628906 4 333.950967 1331.77476 -0.44038 -0.00014707 0.28872 9.6418E-05 -0.15166 -5.0647E-05 333.9510713997682 53.85 0.42912 53.85 53.674 54.103 0 20 11 2 0 0 0 0.0089824 1 10286 10286 47.594 47.329 1 1075100 21089 9801 13794 13799 20926 20926 0.12214546784525737 ILMEHIHKLKA 11 Unmodified _ILMEHIHKLKA_ 0 0 0 ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19 ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 333.950967 1331.77476 -0.42662 -0.00014247 0.31624 0.00010561 -0.11038 -3.6861E-05 334.2017539467216 56.455 0.55158 53.561 53.337 53.888 -2.8944 -0.21307 0.00019235 NaN 47.594 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3261300 21090 9801 13794 13799 0.12214546784525737 ILMEHIHKLKA 11 Unmodified _ILMEHIHKLKA_ 0 0 0 ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19 ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 333.950967 1331.77476 0.074299 2.4812E-05 -0.32787 -0.00010949 -0.25358 -8.4682E-05 333.95086159695194 56.971 0.41375 53.782 53.584 53.998 -3.1895 0.0077401 -0.00066806 NaN 47.594 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1734500 21091 9801 13794 13799 0.12214546784525737 ILMEHIHKLKA 11 Unmodified _ILMEHIHKLKA_ 0 0 0 ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19 ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 333.950967 1331.77476 -0.64609 -0.00021576 0.50365 0.00016819 -0.14244 -4.7569E-05 333.9511656871093 57.08 0.52483 53.904 53.58 54.105 -3.1761 0.12974 0.0004427 NaN 47.594 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1251100 21092 9801 13794 13799 0.12214546784525737 ILMFIICKFWK 11 Unmodified _ILMFIICKFWK_ 0 0 0 nc|ENSG00000178795|Q6W3E5|GDPD4;GDPD4|p.N396Tfs*5|2|0.24|ENSG00000178795|chr11:77243748-77243748|T/-|frameshift_variant;ENSG00000178795|ENST00000315938|GDPD4 nc|ENSG00000178795|Q6W3E5|GDPD4 nc|ENSG00000178795|Q6W3E5|GDPD4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2437438964844 3 481.274795 1440.80256 NaN NaN NaN NaN NaN NaN NaN 80.966 1 80.966 80.466 81.466 0 0 0 0 0.22632 1 15765 15765 0.0059557 0 1 21093 12488 13795 13800 20927 20927 0.09978733720390665 ILMQKMIAAQP 11 Unmodified _ILMQKMIAAQP_ 0 0 0 REV__ENSG00000196782|ENST00000509479|MAML3 REV__ENSG00000196782|ENST00000509479|MAML3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7817993164062 2 622.348694 1242.68284 0.50607 0.00031495 3.9893 0.0024827 4.4954 0.0027977 622.3517583218546 145.35 0.31516 140.4 140.27 140.59 -4.9445 12 8 2 0 0 0 0.95894 1 28122 28122 8.7454 3.8484 1 1544300 + 21094 19281 13796 13801 20928 20928 0.07120120375839178 ILMVRRRWRRK 11 Unmodified _ILMVRRRWRRK_ 0 0 0 REV__CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant REV__CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3922729492188 2 785.490988 1568.96742 NaN NaN NaN NaN NaN NaN NaN 114.32 1 110 109.5 110.5 -4.3136 0 0 0 0.23698 1 22020 22020 1.3295 0 1 + 21095 13368 13797 13802 20929 20929 0.20569726695043755 ILNCSFSRPD 10 Unmodified _ILNCSFSRPD_ 0 0 0 nc|ENSG00000089692|P18627-2|LAG3;ENSG00000089692|ENST00000203629|LAG3;ENST00000538079.1_1_12:6882155-6887174:+|nuORF nc|ENSG00000089692|P18627-2|LAG3 nc|ENSG00000089692|P18627-2|LAG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3192749023438 2 576.279323 1150.54409 NaN NaN NaN NaN NaN NaN NaN 84.415 1 80.505 80.005 81.005 -3.9093 0 0 0 0.22552 1 16044 16044 18.146 4.6385 1 21096 1767 13798 13803 20930 20930 -0.0251570626812736 ILNEVERG 8 Unmodified _ILNEVERG_ 0 0 0 REV__SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant REV__SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2569274902344 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 145.76 1 145.76 145.26 146.26 0 0 0 0 0.21039 1 29138 29138 16.942 1.0951 1 + 21097 24728 13799 13804 20931 20931 0.03068596892092046 ILNLEDQGAL 10 Unmodified _ILNLEDQGAL_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.793212890625 2 543.295496 1084.57644 0.32652 0.0001774 -3.3645 -0.0018279 -3.038 -0.0016505 543.7936465273782 118.32 0.60553 118.32 117.86 118.47 0 28 16 3 0 0 0 0.42569 1 23296 23296 29.082 0.90835 1 2885300 21098 4590 13800 13805 20932 20932 0.03753404406529626 ILNLEDQGAL 10 Unmodified _ILNLEDQGAL_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.295496 1084.57644 0.42196 0.00022925 -0.88364 -0.00048008 -0.46168 -0.00025083 543.2956361945003 123.05 0.10435 118.47 118.38 118.49 -4.5757 0.077211 0.0013136 NaN 29.082 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1043100 21099 4590 13800 13805 0.03753404406529626 ILNLIERPLY 10 Unmodified _ILNLIERPLY_ 0 0 0 REV__ENSG00000163428|ENST00000295628|LRRC58 REV__ENSG00000163428|ENST00000295628|LRRC58 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7586059570312 2 622.374081 1242.73361 NaN NaN NaN NaN NaN NaN NaN 94.012 1 90.168 89.668 90.668 -3.844 0 0 0 0.22588 1 18029 18029 4.3292 0 1 + 21100 17569 13801 13806 20933 20933 0.12195109016715833 ILNQYKQL 8 Unmodified _ILNQYKQL_ 0 0 0 REV__nc|ENSG00000094880|Q9UJX2-3|CDC23 REV__nc|ENSG00000094880|Q9UJX2-3|CDC23 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 510.2683410644531 2 510.297842 1018.58113 NaN NaN NaN NaN NaN NaN NaN 159.64 1 154.84 154.34 155.34 -4.7952 0 0 0 0.22934 1 31741 31741 0.25148 0 1 + 21101 14598 13802 13807 20934 20934 0.07258333339939327 ILNRRKLLRYT 11 Unmodified _ILNRRKLLRYT_ 0 0 0 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 482.62847900390625 3 482.640294 1444.89905 NaN NaN NaN NaN NaN NaN NaN 160.97 1 160.97 160.47 161.47 0 0 0 0 0.22632 1 32324 32324 1.4551 1.3603 1 + 21102 14362 13803 13808 20935 20935 0.19439760596219458 ILNSKNLLP 9 Unmodified _ILNSKNLLP_ 0 0 0 ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant;ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant;ZNF687|p.R871Gfs*29|1|0.1|ENSG00000143373|chr1:151289512-151289512|A/-|frameshift_variant;ZNF687|p.R939Vfs*10|1|0.08|ENSG00000143373|chr1:151289852-151289852|C/-|frameshift_variant;ZNF687|p.P960Lfs*23|1|0.3|ENSG00000143373|chr1:151289915-151289915|G/-|frameshift_variant;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687 ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 506.7134094238281 2 506.313492 1010.61243 0.029633 1.5004E-05 -0.055952 -2.8329E-05 -0.026319 -1.3326E-05 506.3133529893511 91.692 0.4866 87.883 87.548 88.035 -3.8083 21 13 2 0 0 0 0.52768 1 17547 17547 1.6919 0.47705 1 1307100 21103 4479 13804 13809 20936 20936 0.1075490637402936 ILNSKNLLP 9 Unmodified _ILNSKNLLP_ 0 0 0 ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant;ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant;ZNF687|p.R871Gfs*29|1|0.1|ENSG00000143373|chr1:151289512-151289512|A/-|frameshift_variant;ZNF687|p.R939Vfs*10|1|0.08|ENSG00000143373|chr1:151289852-151289852|C/-|frameshift_variant;ZNF687|p.P960Lfs*23|1|0.3|ENSG00000143373|chr1:151289915-151289915|G/-|frameshift_variant;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687 ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 506.313492 1010.61243 0.10296 5.2129E-05 0.012148 6.1506E-06 0.11511 5.8279E-05 506.31320886189474 88.055 0.34303 88.055 87.847 88.19 0 0.1539 -7.833E-05 NaN 1.6919 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 752590 21104 4479 13804 13809 0.1075490637402936 ILNSKNLLP 9 Unmodified _ILNSKNLLP_ 0 0 0 ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant;ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant;ZNF687|p.R871Gfs*29|1|0.1|ENSG00000143373|chr1:151289512-151289512|A/-|frameshift_variant;ZNF687|p.R939Vfs*10|1|0.08|ENSG00000143373|chr1:151289852-151289852|C/-|frameshift_variant;ZNF687|p.P960Lfs*23|1|0.3|ENSG00000143373|chr1:151289915-151289915|G/-|frameshift_variant;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687 ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 506.313492 1010.61243 -0.10168 -5.1481E-05 0.18631 9.4333E-05 0.084636 4.2852E-05 506.3135656457256 91.743 0.51582 87.817 87.441 87.957 -3.9251 -0.084049 9.8035E-05 NaN 1.6919 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1501500 21105 4479 13804 13809 0.1075490637402936 ILNSKNLLP 9 Unmodified _ILNSKNLLP_ 0 0 0 ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant;ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant;ZNF687|p.R871Gfs*29|1|0.1|ENSG00000143373|chr1:151289512-151289512|A/-|frameshift_variant;ZNF687|p.R939Vfs*10|1|0.08|ENSG00000143373|chr1:151289852-151289852|C/-|frameshift_variant;ZNF687|p.P960Lfs*23|1|0.3|ENSG00000143373|chr1:151289915-151289915|G/-|frameshift_variant;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687 ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 506.313492 1010.61243 -0.030853 -1.5621E-05 0.16114 8.1586E-05 0.13028 6.5965E-05 506.3134546103635 91.944 0.45043 87.85 87.563 88.014 -4.0946 -0.051755 7.254E-05 NaN 1.6919 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1267900 21106 4479 13804 13809 0.1075490637402936 ILNSLNEEL 9 Unmodified _ILNSLNEEL_ 0 0 0 REV__tr|U7T494|U7T494_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00302PE=4SV=1 REV__tr|U7T494|U7T494_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00302PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2813720703125 2 522.782222 1043.54989 0.39283 0.00020536 1.1853 0.00061963 1.5781 0.00082499 522.7826833376334 100.62 0.57716 96.626 96.348 96.925 -3.9895 27 16 2 0 0 0 0.85111 1 19360 19360 3.5965 1.2938 1 1341200 + 21107 25390 13805 13810 20937 20937 0.02985715515183074 ILNTSVVPML 10 Unmodified _ILNTSVVPML_ 0 0 0 OR6C76|p.A279V|1|0.26|ENSG00000185821|chr12:55427089-55427089|C/T|missense_variant OR6C76|p.A279V|1|0.26|ENSG00000185821|chr12:55427089-55427089|C/T|missense_variant OR6C76|p.A279V|1|0.26|ENSG00000185821|chr12:55427089-55427089|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7821655273438 2 543.81501 1085.61547 NaN NaN NaN NaN NaN NaN NaN 66.494 1 63.447 62.947 63.947 -3.047 0 0 0 0.22588 1 12885 12885 6.7232 0.96273 1 21108 12736 13806 13811 20938 20938 0.07608413436537376 ILNTWMNDFR 10 Unmodified _ILNTWMNDFR_ 0 0 0 TOPAZ1|p.N1080Mfs*9|1|0.27|ENSG00000173769|chr3:44269288-44269288|A/-|frameshift_variant;ENSG00000173769|ENST00000309765|TOPAZ1 TOPAZ1|p.N1080Mfs*9|1|0.27|ENSG00000173769|chr3:44269288-44269288|A/-|frameshift_variant TOPAZ1|p.N1080Mfs*9|1|0.27|ENSG00000173769|chr3:44269288-44269288|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.217529296875 3 437.216774 1308.62849 NaN NaN NaN NaN NaN NaN NaN 135.95 1 131.06 130.56 131.56 -4.8951 0 0 0 0.22588 1 26123 26123 3.3196 0.47636 1 21109 6308 13807 13812 20939 20939 -0.01347755451388366 ILNVQNVY 8 Unmodified _ILNVQNVY_ 0 0 0 REV__nc|ENSG00000146453|Q8NA58|PNLDC1 REV__nc|ENSG00000146453|Q8NA58|PNLDC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7689514160156 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 88.195 1 84.403 83.903 84.903 -3.7926 0 0 0 0.20896 1 17248 17248 18.135 2.2878 1 + 21110 16890 13808 13813 20940 20940 0.040980714145121055 ILPARKRRLAW 11 Unmodified _ILPARKRRLAW_ 0 0 0 ENST00000436302.6_2_7:134671259-134671448:+|nuORF ENST00000436302.6_2_7:134671259-134671448:+|nuORF ENST00000436302.6_2_7:134671259-134671448:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2444763183594 3 460.629729 1378.86736 NaN NaN NaN NaN NaN NaN NaN 90.347 1 86.487 85.987 86.987 -3.8595 0 0 0 0.22632 1 17675 17675 0 0 1 21111 9838 13809 13814 20941 20941 0.1930781263292829 ILPGVRLGPSD 11 Unmodified _ILPGVRLGPSD_ 0 0 0 REV__ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant REV__ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2205505371094 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 177.75 1 177.75 177.25 178.25 0 0 0 0 0.23698 1 36820 36820 0.45452 0.10388 1 + 21112 13146 13810 13815 20942 20942 0.08329389914433705 ILPGVRLGPSD 11 Unmodified _ILPGVRLGPSD_ 0 0 0 REV__ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant REV__ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2203063964844 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 177.73 1 172.94 172.44 173.44 -4.7898 0 0 0 0.23698 1 36353 36353 0.45452 0.1855 1 + 21113 13146 13810 13815 20943 20943 0.08329389914433705 ILPHRLVV 8 Unmodified _ILPHRLVV_ 0 0 0 REV__ENST00000464431.1_1_3:127395028-127395444:+|nuORF REV__ENST00000464431.1_1_3:127395028-127395444:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.2112731933594 3 316.2114 945.612371 NaN NaN NaN NaN NaN NaN NaN 62.728 1 62.728 62.228 63.228 0 0 0 0 0.21486 1 12049 12049 4.3292 0.38484 1 + 21114 21936 13811 13816 20944 20944 0.1373895116469157 ILPLPQGMLP 10 Unmodified _ILPLPQGMLP_ 0 0 0 REV__ENST00000469358.5_1_6:30887456-30890206:+|nuORF REV__ENST00000469358.5_1_6:30887456-30890206:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2168884277344 3 360.215822 1077.62564 NaN NaN NaN NaN NaN NaN NaN 91.387 1 91.387 90.887 91.887 0 0 0 0 0.22588 1 17857 17857 1.9064 0.42447 1 + 21115 16389 13812 13817 20945 20945 0.08993021161791148 ILPLWHVG 8 Unmodified _ILPLWHVG_ 0 0 0 ENST00000498029.1_1_X:153648339-153649340:+|nuORF;nc|ENSG00000102125|Q16635-9|TAFAZZIN;nc|ENSG00000102125|Q16635-8|TAFAZZIN;nc|ENSG00000102125|Q16635-7|TAFAZZIN;nc|ENSG00000102125|Q16635-6|TAFAZZIN;nc|ENSG00000102125|Q16635|TAFAZZIN;nc|ENSG00000102125|Q16635-4|TAFAZZIN;nc|ENSG00000102125|Q16635-2|TAFAZZIN;nc|ENSG00000102125|Q16635-5|TAFAZZIN;ENSG00000102125|ENST00000601016|TAFAZZIN ENST00000498029.1_1_X:153648339-153649340:+|nuORF ENST00000498029.1_1_X:153648339-153649340:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.1882019042969 3 312.188484 933.543623 NaN NaN NaN NaN NaN NaN NaN 103.79 1 103.79 103.29 104.29 0 0 0 0 0.21486 1 20397 20397 0.45834 0.057624 1 21116 2111 13813 13818 20946 20946 0.07419286864990227 ILPMCPEL 8 Unmodified _ILPMCPEL_ 0 0 0 ENST00000476322.1_1_6:170064385-170064691:-|nuORF ENST00000476322.1_1_6:170064385-170064691:-|nuORF ENST00000476322.1_1_6:170064385-170064691:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2381896972656 2 458.23755 914.460547 NaN NaN NaN NaN NaN NaN NaN 71.965 1 68.654 68.154 69.154 -3.3107 0 0 0 0.21181 1 14020 14020 15.768 1.1865 1 21117 10286 13814 13819 20947 20947 -0.00010533969543757848 ILPSYMSIY 9 Unmodified _ILPSYMSIY_ 0 0 0 CEP112|p.E582Rfs*4|1|0.3|ENSG00000154240|chr17:65961592-65961592|T/-|frameshift_variant;ENSG00000154240|ENST00000535342|CEP112 CEP112|p.E582Rfs*4|1|0.3|ENSG00000154240|chr17:65961592-65961592|T/-|frameshift_variant CEP112|p.E582Rfs*4|1|0.3|ENSG00000154240|chr17:65961592-65961592|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7831420898438 2 543.780636 1085.54672 NaN NaN NaN NaN NaN NaN NaN 149.67 1 149.67 149.17 150.17 0 0 0 0 0.23048 1 29964 29964 14.582 3.4672 1 21118 486 13815 13820 20948 20948 0.007367491368313495 ILQEKEEQHQL 11 Unmodified _ILQEKEEQHQL_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2398376464844 3 465.580658 1393.72014 -0.3366 -0.00015672 0.39472 0.00018377 0.058116 2.7058E-05 465.9151778721362 39.531 0.52174 36.981 36.789 37.311 -2.5491 24 14 2 0 0 0 0.96117 1 7338 7338 4.1166 1.0444 1 1587100 21119 2429 13816 13821 20949 20949 0.03903206446807417 ILQKNWEWRKK 11 Unmodified _ILQKNWEWRKK_ 0 0 0 ENST00000409181.1_1_2:203072019-203075498:-|nuORF ENST00000409181.1_1_2:203072019-203075498:-|nuORF ENST00000409181.1_1_2:203072019-203075498:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 510.29669189453125 3 510.296415 1527.86742 NaN NaN NaN NaN NaN NaN NaN 159.42 1 154.62 154.12 155.12 -4.7952 0 0 0 0.22632 1 31696 31696 1.4551 0.94916 1 21120 9560 13817 13822 20950 20950 0.12459767842233305 ILQLLSKLKGF 11 Unmodified _ILQLLSKLKGF_ 0 0 0 ENSG00000120832|ENST00000240050|MTERF2 ENSG00000120832|ENST00000240050|MTERF2 ENSG00000120832|ENST00000240050|MTERF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76708984375 2 630.407924 1258.80129 0.88625 0.0005587 -0.15332 -9.6654E-05 0.73294 0.00046205 630.4077034918928 90.444 0.63382 86.585 86.262 86.896 -3.8595 42 17 3 0 0 0 0.96084 1 17667 17667 3.2813 0.28607 1 5879800 21121 3157 13818 13823 20951 20951 0.18224558947486003 ILQSVDDAAI 10 Unmodified _ILQSVDDAAI_ 0 0 0 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2734375 2 522.782222 1043.54989 0.45322 0.00023694 -0.5736 -0.00029987 -0.12037 -6.2929E-05 522.7818583696845 99.609 0.80753 99.609 99.161 99.969 0 35 22 2 0 0 0 0.70987 1 19469 19469 24.021 4.7636 1 2633300 21122 12314 13819 13824 20952 20952 0.02985715515183074 ILQSVDDAAI 10 Unmodified _ILQSVDDAAI_ 0 0 0 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;ENSG00000129351|ENST00000588657|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2627563476562 2 522.782222 1043.54989 0.20982 0.00010969 1.174 0.00061376 1.3838 0.00072345 522.7828116340606 97.06 0.45422 97.06 96.875 97.329 0 18 12 2 0 0 0 0.8888 1 19055 19055 7.2892 0 1 1385100 21123 12314 13819 13824 20953 20953 0.02985715515183074 ILREIRRNVEP 11 Unmodified _ILREIRRNVEP_ 0 0 0 REV__DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant REV__DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2562561035156 3 465.612404 1393.81538 -0.17982 -8.3726E-05 -0.4258 -0.00019826 -0.60561 -0.00028198 465.6121504903017 49.697 0.52468 46.816 46.59 47.114 -2.8811 25 14 2 0 0 0 0.96197 1 9377 9377 2.6312 2.6312 1 2421800 + 21124 13639 13820 13825 20954 20954 0.13422604428501472 ILRHKDIID 9 Unmodified _ILRHKDIID_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.207763671875 3 374.892507 1121.65569 0.31549 0.00011827 -0.48025 -0.00018004 -0.16476 -6.1769E-05 374.89233552697056 30.791 0.42275 28.894 28.728 29.151 -1.8972 18 11 2 0 0 0 0.8759 1 5288 5288 5.4027 0 1 1052600 21125 4896 13821 13826 20955 20955 0.09973096151315985 ILRKPAKGP 9 Unmodified _ILRKPAKGP_ 0 0 0 REV__nc|ENSG00000240382|P01599|IGKV1-17 REV__nc|ENSG00000240382|P01599|IGKV1-17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2757873535156 2 490.324194 978.633835 NaN NaN NaN NaN NaN NaN NaN 121.79 1 121.79 121.29 122.29 0 0 0 0 0.23508 1 24009 24009 5.2307 0.47466 1 + 21126 24286 13822 13827 20956 20956 0.14366336193415918 ILRRIFRL 8 Unmodified _ILRRIFRL_ 0 0 0 REV__nc|nan|Q9UFG5-2|C19orf25 REV__nc|nan|Q9UFG5-2|C19orf25 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7708740234375 2 543.86656 1085.71857 0.33796 0.00018381 -2.2273 -0.0012113 -1.8893 -0.0010275 543.864958034453 144.05 0.1021 144.05 143.97 144.07 0 4 2 2 0 0 0 1.0254 1 28766 28766 5.2307 0.47466 1 2610900 + 21127 24341 13823 13828 20957 20957 0.17913706730041667 ILRTHHRSYDW 11 Unmodified _ILRTHHRSYDW_ 0 0 0 REV__chr3:42786162-42788622|342|15.06|0.0|20.52|-|2|TE_info:AluSx1,AluSx1_dup18965,Alu,SINE,donor,+,42788622,42788900|HIGD1A,None|2 REV__chr3:42786162-42788622|342|15.06|0.0|20.52|-|2|TE_info:AluSx1,AluSx1_dup18965,Alu,SINE,donor,+,42788622,42788900|HIGD1A,None|2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3822021484375 2 742.381291 1482.74803 NaN NaN NaN NaN NaN NaN NaN 97.872 1 97.872 97.372 98.372 0 0 0 0 0.2367 1 19182 19182 2.9952 0.26005 1 + 21128 13425 13824 13829 20958 20958 0.025965742175458217 ILRWIALFP 9 Unmodified _ILRWIALFP_ 0 0 0 REV__ENSG00000144224|ENST00000272638|UBXN4 REV__ENSG00000144224|ENST00000272638|UBXN4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 564.6105346679688 2 564.850045 1127.68554 0.17099 9.6582E-05 -0.17559 -9.9183E-05 -0.0046044 -2.6008E-06 565.3502558153482 162.44 0.2047 157.29 157.23 157.44 -5.1438 6 5 2 0 0 0 0.59016 1 31572 31572 0.12781 0.06395 1 7538800 + 21129 16773 13825 13830 20959 20959 0.1268007988728641 ILSDWFCG 8 Unmodified _ILSDWFCG_ 0 0 0 REV__ENST00000515668.5_1_4:37841869-37848777:+|nuORF REV__ENST00000515668.5_1_4:37841869-37848777:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1458740234375 3 314.145956 939.416039 NaN NaN NaN NaN NaN NaN NaN 51.128 1 48.083 47.583 48.583 -3.0453 0 0 0 0.21486 1 9382 9382 3.9444 0 1 + 21130 22590 13826 13831 20960 20960 -0.056092217913601417 ILSFHTEAK 9 Unmodified _ILSFHTEAK_ 0 0 0 REV__MYH8|p.A578T|1|0.39|ENSG00000133020|chr17:10409444-10409444|C/T|missense_variant REV__MYH8|p.A578T|1|0.39|ENSG00000133020|chr17:10409444-10409444|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.684326171875 2 523.287474 1044.5604 -0.44948 -0.00023521 0.68912 0.00036061 0.23963 0.0001254 523.2878719015049 75.344 1.043 71.621 71.127 72.17 -3.7227 71 29 4 0 0 0 0.74655 1 14308 14308 10.824 3.5347 1 11825000 + 21131 23897 13827 13832 20961 20961 0.03989742960266085 ILSFHTEAK 9 Unmodified _ILSFHTEAK_ 0 0 0 REV__MYH8|p.A578T|1|0.39|ENSG00000133020|chr17:10409444-10409444|C/T|missense_variant REV__MYH8|p.A578T|1|0.39|ENSG00000133020|chr17:10409444-10409444|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.287474 1044.5604 0.33156 0.0001735 -0.066975 -3.5047E-05 0.26458 0.00013845 523.2873839436324 75.236 0.80551 71.602 71.195 72.001 -3.6337 -0.0096425 -0.00051638 NaN 6.7232 64 22 4 NaN NaN NaN NaN 0 NaN NaN 0 12670000 + 21132 23897 13827 13832 0.03989742960266085 ILSLHLLV 8 Unmodified _ILSLHLLV_ 0 0 0 nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|O94854-4|MACF1 nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|O94854|MACF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75982666015625 2 454.302396 906.590239 0.059616 2.7084E-05 0.18707 8.4984E-05 0.24668 0.00011207 454.3023980706674 128.93 1.0173 124.11 123.59 124.61 -4.817 84 28 4 0 0 0 0.95284 1 24805 24805 9.3474 0 1 34389000 21133 12310 13828 13833 20962 20962 0.13320726696292695 ILSLMFMGLG 10 Unmodified _ILSLMFMGLG_ 0 0 0 REV__tr|U7T0T7|U7T0T7_FUSNUPutativeK(+)-stimulatedpyrophosphate-energizedsodiumpumpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hppAPE=3SV=1 REV__tr|U7T0T7|U7T0T7_FUSNUPutativeK(+)-stimulatedpyrophosphate-energizedsodiumpumpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hppAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2802734375 2 541.292856 1080.57116 NaN NaN NaN NaN NaN NaN NaN 97.121 1 93.201 92.701 93.701 -3.9194 0 0 0 0.22535 1 18640 18640 20.454 2.3186 1 + 21134 25276 13829 13834 20963 20963 0.03409686018699176 ILSSACYTV 9 Unmodified _ILSSACYTV_ 0 0 0 ENSG00000081277|ENST00000367324|PKP1;nc|ENSG00000081277|Q13835|PKP1 ENSG00000081277|ENST00000367324|PKP1 ENSG00000081277|ENST00000367324|PKP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74163818359375 2 478.741511 955.468469 NaN NaN NaN NaN NaN NaN NaN 120.23 1 115.7 115.2 116.2 -4.5221 0 0 0 0.22251 1 23705 23705 16.942 1.1741 1 21135 1626 13830 13835 20964 20964 -0.01104683448409105 ILSTGCAPPG 10 Unmodified _ILSTGCAPPG_ 0 0 0 ENSG00000124713|ENST00000372808|GNMT ENSG00000124713|ENST00000372808|GNMT ENSG00000124713|ENST00000372808|GNMT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2349853515625 2 458.233853 914.453153 NaN NaN NaN NaN NaN NaN NaN 40.801 1 38.166 37.666 38.666 -2.6348 0 0 0 2.8426 1 7613 7613 0.84494 0 1 21136 3329 13831 13836 20965 20965 -0.0074955024559812955 ILTDITKGV 9 Unmodified _ILTDITKGV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24554443359375 2 480.292225 958.569897 0.19149 9.1972E-05 -0.24111 -0.0001158 -0.049617 -2.383E-05 480.29222751031415 99.075 1.9725 99.075 98.613 100.59 0 176 56 5 0 0 0 0.037776 4 19365 19365;19395;19605;19608 98.634 45.899 1 685310000 21137 5830 13832 13837 20966;20967;20968;20969 20966 0.0889551124580521 ILTDITKGV 9 Unmodified _ILTDITKGV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.774169921875 2 480.292225 958.569897 -0.036281 -1.7426E-05 -0.095799 -4.6012E-05 -0.13208 -6.3437E-05 480.2923329964026 102.88 1.8995 98.694 98.165 100.06 -4.1861 179 54 5 0 0 0 0.069179 3 20171 20171;20172;20330 52.735 12.418 1 607540000 21138 5830 13832 13837 20970;20971;20972 20970 0.0889551124580521 ILTDITKGV 9 Unmodified _ILTDITKGV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.768798828125 2 480.292225 958.569897 0.26974 0.00012956 -0.34915 -0.00016769 -0.079407 -3.8138E-05 480.29221208953055 103.15 2.9933 98.824 98.324 101.32 -4.3208 220 85 6 0 0 0 0.24263 1 19791 19791 34.932 10.911 1 618250000 21139 5830 13832 13837 20973 20973 0.0889551124580521 ILTDITKGV 9 Unmodified _ILTDITKGV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2527160644531 2 480.292225 958.569897 0.52934 0.00025424 -0.58569 -0.0002813 -0.056354 -2.7067E-05 480.2921347792223 102.92 2.3392 98.902 98.388 100.73 -4.0212 199 65 6 0 0 0 0.063365 3 19861 19741;19743;19861 89.193 65.403 1 728470000 21140 5830 13832 13837 20974;20975;20976 20976 0.0889551124580521 ILTETINTV 9 Unmodified _ILTETINTV_ 0 0 0 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 501.7699279785156 2 502.28714 1002.55973 -0.52329 -0.00026284 0.64849 0.00032573 0.1252 6.2885E-05 502.2874012595927 108.08 0.58907 103.76 103.52 104.11 -4.32 28 16 2 0 0 0 0.35995 1 21324 21324 14.987 4.0876 1 2561300 21141 4210 13833 13838 20977 20977 0.05854903520582866 ILTETINTV 9 Unmodified _ILTETINTV_ 0 0 0 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 502.28714 1002.55973 0.53367 0.00026805 -0.30646 -0.00015393 0.22721 0.00011413 502.28699301202107 103.95 0.62517 103.95 103.62 104.24 0 0.057516 -0.00031896 NaN 14.987 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2559500 21142 4210 13833 13838 0.05854903520582866 ILTETINTV 9 Unmodified _ILTETINTV_ 0 0 0 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 502.28714 1002.55973 -0.32623 -0.00016386 0.28428 0.00014279 -0.041948 -2.107E-05 502.28729462307297 108.36 0.6158 103.95 103.68 104.3 -4.4121 0.057507 0.00027448 NaN 14.987 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2203200 21143 4210 13833 13838 0.05854903520582866 ILTETINTV 9 Unmodified _ILTETINTV_ 0 0 0 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 502.28714 1002.55973 0.55547 0.00027901 -0.58604 -0.00029436 -0.030567 -1.5353E-05 502.2870487636941 108.04 0.7726 103.91 103.56 104.33 -4.135 0.013642 -0.00059982 NaN 14.987 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2388700 21144 4210 13833 13838 0.05854903520582866 ILTGHTQSV 9 Unmodified _ILTGHTQSV_ 0 0 0 ENSG00000073536|ENST00000442241|NLE1;NLE1|p.R240C|1|0.38|ENSG00000073536|chr17:35137111-35137111|G/A|missense_variant ENSG00000073536|ENST00000442241|NLE1 ENSG00000073536|ENST00000442241|NLE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7236328125 2 478.263999 954.513445 -0.37095 -0.00017741 0.46138 0.00022066 0.090431 4.325E-05 478.2641990671016 37.536 0.45589 35.067 34.841 35.297 -2.4688 21 12 2 0 0 0 0.10265 1 6945 6945 72.968 11.61 1 1998300 21145 1485 13834 13839 20978 20978 0.034368834091424105 ILTGHTQSV 9 Unmodified _ILTGHTQSV_ 0 0 0 ENSG00000073536|ENST00000442241|NLE1;NLE1|p.R240C|1|0.38|ENSG00000073536|chr17:35137111-35137111|G/A|missense_variant ENSG00000073536|ENST00000442241|NLE1 ENSG00000073536|ENST00000442241|NLE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7326354980469 2 478.263999 954.513445 0.077442 3.7038E-05 0.021737 1.0396E-05 0.099179 4.7434E-05 478.2639617039341 37.488 0.38189 35.14 34.96 35.342 -2.3479 20 10 2 0 0 0 0.19141 1 6644 6644 57.722 5.4536 1 1288500 21146 1485 13834 13839 20979 20979 0.034368834091424105 ILTGHTQSV 9 Unmodified _ILTGHTQSV_ 0 0 0 ENSG00000073536|ENST00000442241|NLE1;NLE1|p.R240C|1|0.38|ENSG00000073536|chr17:35137111-35137111|G/A|missense_variant ENSG00000073536|ENST00000442241|NLE1 ENSG00000073536|ENST00000442241|NLE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7237548828125 2 478.263999 954.513445 0.23427 0.00011204 -0.16464 -7.8743E-05 0.069631 3.3302E-05 478.2638858862233 37.496 0.41688 35.159 34.946 35.362 -2.3375 20 11 2 0 0 0 0.19141 1 6629 6629 57.722 5.4536 1 1231200 21147 1485 13834 13839 20980 20980 0.034368834091424105 ILTLIPSGY 9 Unmodified _ILTLIPSGY_ 0 0 0 nc|ENSG00000112337|O00624-2|SLC17A2;nc|ENSG00000112337|O00624|SLC17A2;ENSG00000112337|ENST00000377850|SLC17A2 nc|ENSG00000112337|O00624-2|SLC17A2 nc|ENSG00000112337|O00624-2|SLC17A2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 326.2023620605469 3 326.195304 975.564084 NaN NaN NaN NaN NaN NaN NaN 140.34 1 135.35 134.85 135.85 -4.9877 0 0 0 0.23508 1 27011 27011 2.9952 1.8019 1 21148 2689 13835 13840 20981 20981 0.075324127341446 ILTLSTSRPV 10 Unmodified _ILTLSTSRPV_ 0 0 0 REV__nc|ENSG00000185808|P57054|PIGP REV__nc|ENSG00000185808|P57054|PIGP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77392578125 2 543.829506 1085.64446 0.62057 0.00033749 -0.52842 -0.00028737 0.092157 5.0118E-05 543.8291683016241 114.64 0.90628 110.33 109.82 110.72 -4.3136 74 25 4 0 0 0 0.59264 1 22124 22124 22.736 4.3632 1 19936000 + 21149 24210 13836 13841 20982 20982 0.10506274057183873 ILTMEAKPY 9 Unmodified _ILTMEAKPY_ 0 0 0 REV__ENSG00000198108|ENST00000305031|CHSY3 REV__ENSG00000198108|ENST00000305031|CHSY3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2672119140625 2 533.286085 1064.55762 0.10618 5.6627E-05 0.69526 0.00037077 0.80145 0.0004274 533.2861197793412 131.93 0.79729 131.93 131.5 132.3 0 45 22 3 0 0 0 0.4376 1 26052 26052 2.6312 0.70373 1 5199100 + 21150 19391 13837 13842 20983 20983 0.02792151511107477 ILTPSLNPLIY 11 Unmodified _ILTPSLNPLIY_ 0 0 0 OR2T6|p.L284S|1|0.36|ENSG00000198104|chr1:248388459-248388459|T/C|missense_variant OR2T6|p.L284S|1|0.36|ENSG00000198104|chr1:248388459-248388459|T/C|missense_variant OR2T6|p.L284S|1|0.36|ENSG00000198104|chr1:248388459-248388459|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7530517578125 2 622.368464 1242.72238 NaN NaN NaN NaN NaN NaN NaN 99.487 1 95.217 94.717 95.717 -4.2692 0 0 0 0.23199 1 19019 19019 6.7232 0.99131 1 21151 12727 13838 13843 20984 20984 0.11072286922558305 ILTPYDTKK 9 Unmodified _ILTPYDTKK_ 0 0 0 ENSG00000276293|ENST00000619039|PIP4K2B ENSG00000276293|ENST00000619039|PIP4K2B ENSG00000276293|ENST00000619039|PIP4K2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2099304199219 3 360.209613 1077.60701 NaN NaN NaN NaN NaN NaN NaN 88.18 1 84.185 83.685 84.685 -3.9953 0 0 0 0.19636 1 16795 16795 2.4985 2.4723 1 21152 8032 13839 13844 20985 20985 0.0713118279156788 ILTRPPKVKK 10 Unmodified _ILTRPPKVKK_ 0 0 0 REV__nc|ENSG00000129295|Q86X45-2|DNAAF11 REV__nc|ENSG00000129295|Q86X45-2|DNAAF11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2627563476562 2 590.400433 1178.78631 NaN NaN NaN NaN NaN NaN NaN 156.57 1 151.3 150.8 151.8 -5.2712 0 0 0 0.22588 1 30367 30367 1.3295 0.13619 1 + 21153 15956 13840 13845 20986 20986 0.20407111870144945 ILVDYSKNL 9 Unmodified _ILVDYSKNL_ 0 0 0 GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant;CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;ENST00000589504.1_1_19:34856171-34859700:+|nuORF GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2763061523438 2 532.802957 1063.59136 0.29657 0.00015802 -0.14417 -7.6814E-05 0.1524 8.1201E-05 532.8029021489695 108.24 0.6862 103.83 103.47 104.16 -4.4121 35 19 2 0 0 0 0.45972 1 20710 20710 8.1555 7.7759 1 2503100 + 21154 698 13841 13846 20987 20987 0.062108962745242025 ILVEMEDEF 9 Unmodified _ILVEMEDEF_ 0 0 0 ENSG00000135912|ENST00000392102|TTLL4;ENST00000465558.5_1_2:219612840-219617731:+|nuORF ENSG00000135912|ENST00000392102|TTLL4 ENSG00000135912|ENST00000392102|TTLL4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.22076416015625 3 375.510852 1123.51073 -0.20306 -7.6252E-05 0.15389 5.7786E-05 -0.049177 -1.8467E-05 375.5108074262382 72.507 0.41344 72.507 72.336 72.749 0 16 11 2 0 0 0 0.77644 1 14081 14081 20.415 0 1 1982400 21155 3963 13842 13847 20988 20988 -0.046087528306770764 ILVGLTEKS 9 Unmodified _ILVGLTEKS_ 0 0 0 OR8G5|p.N241Efs*3|1|0.03|ENSG00000255298|chr11:124265546-124265547|-/GAACCCTA|frameshift_variant;ENSG00000255298|ENST00000641992|OR8G5;nc|ENSG00000255298|Q8NG78|OR8G5 OR8G5|p.N241Efs*3|1|0.03|ENSG00000255298|chr11:124265546-124265547|-/GAACCCTA|frameshift_variant OR8G5|p.N241Efs*3|1|0.03|ENSG00000255298|chr11:124265546-124265547|-/GAACCCTA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7746276855469 2 480.292225 958.569897 0.19149 9.1972E-05 -0.24111 -0.0001158 -0.049617 -2.383E-05 480.29222751031415 99.075 1.9725 99.075 98.613 100.59 0 176 56 5 0 0 0 0.55728 1 19348 19348 0.073264 0.029476 1 685310000 21156 7931 13843 13848 20989 20989 0.08895511245816579 ILVNKKDKI 9 Unmodified _ILVNKKDKI_ 0 0 0 tr|U7SUX4|U7SUX4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01042PE=4SV=1 tr|U7SUX4|U7SUX4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01042PE=4SV=1 tr|U7SUX4|U7SUX4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01042PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5596008300781 3 357.569253 1069.68593 -0.15283 -5.4647E-05 -0.24888 -8.8991E-05 -0.40171 -0.00014364 357.56914876440027 30.628 0.45303 28.554 28.291 28.744 -2.0743 16 12 2 0 0 0 0.59228 1 5264 5264 13.615 2.7159 1 502320 21157 26215 13844 13849 20990 20990 0.15387454816504942 ILVRDEIA 8 Unmodified _ILVRDEIA_ 0 0 0 nc|ENSG00000164451|Q5JW98-4|CALHM4;nc|ENSG00000164451|Q5JW98-3|CALHM4;ENSG00000164451|ENST00000368596|CALHM4 nc|ENSG00000164451|Q5JW98-4|CALHM4 nc|ENSG00000164451|Q5JW98-4|CALHM4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24853515625 2 464.776742 927.538931 0.052329 2.4321E-05 -0.80015 -0.00037189 -0.74782 -0.00034757 464.7762882368938 96.086 0.48306 96.086 95.871 96.354 0 21 13 2 0 0 0 8448 1 18833 18833 0.12286 0 1 1168100 21158 5546 13845 13850 20991 20991 0.07226357931551775 ILWKESKHY 9 Unmodified _ILWKESKHY_ 0 0 0 tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.295654296875 2 602.329673 1202.64479 NaN NaN NaN NaN NaN NaN NaN 86.048 1 82.319 81.819 82.819 -3.7289 0 0 0 0.23508 1 16449 16449 4.3292 0.38484 1 21159 26280 13846 13851 20992 20992 0.051576937770278164 ILWKFFIQ 8 Unmodified _ILWKFFIQ_ 0 0 0 ENST00000367866.6_1_1:167386158-167386248:+|nuORF ENST00000367866.6_1_1:167386158-167386248:+|nuORF ENST00000367866.6_1_1:167386158-167386248:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7674560546875 2 547.823495 1093.63244 NaN NaN NaN NaN NaN NaN NaN 116.2 1 111.62 111.12 112.12 -4.5815 0 0 0 0.21486 1 22298 22298 9.3474 0.75416 1 21160 9083 13847 13852 20993 20993 0.08936702104642791 ILYASQFSH 9 Unmodified _ILYASQFSH_ 0 0 0 REV__nc|ENSG00000136193|Q12765-3|SCRN1 REV__nc|ENSG00000136193|Q12765-3|SCRN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.273681640625 2 533.271824 1064.5291 0.41578 0.00022173 -0.41813 -0.00022297 -0.0023419 -1.2488E-06 533.271546008829 104.49 1.665 104.49 103.79 105.46 0 165 47 4 0 0 0 0.2213 1 20403 20403 1.6919 0 1 171780000 + 21161 16317 13848 13853 20994 20994 -0.0005883007379452465 ILYASQFSH 9 Unmodified _ILYASQFSH_ 0 0 0 REV__nc|ENSG00000136193|Q12765-3|SCRN1 REV__nc|ENSG00000136193|Q12765-3|SCRN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2723388671875 2 533.271824 1064.5291 -0.40797 -0.00021756 0.42219 0.00022514 0.014221 7.5835E-06 533.2719894927969 108.82 1.9464 104.45 103.67 105.62 -4.3776 195 55 5 0 0 0 0.31728 3 21306 21293;21306;21630 17.113 3.3156 1 182290000 + 21162 16317 13848 13853 20995;20996;20997 20996 -0.0005883007379452465 ILYASQFSH 9 Unmodified _ILYASQFSH_ 0 0 0 REV__nc|ENSG00000136193|Q12765-3|SCRN1 REV__nc|ENSG00000136193|Q12765-3|SCRN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2816772460938 2 533.271824 1064.5291 0.72819 0.00038832 -0.60863 -0.00032456 0.11956 6.3757E-05 533.2714571641727 108.5 2.1367 104.37 103.7 105.83 -4.135 196 60 5 0 0 0 0.31728 2 20754 20754;21117 17.113 0.96379 1 153590000 + 21163 16317 13848 13853 20998;20999 20998 -0.0005883007379452465 ILYDERSVHKV 11 Unmodified _ILYDERSVHKV_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.1431884765625 4 340.441126 1357.7354 -0.027189 -9.2564E-06 -0.019718 -6.7127E-06 -0.046907 -1.5969E-05 340.4410755136699 46.667 0.52628 46.667 46.384 46.91 0 30 14 3 0 0 0 0.88374 1 8766 8766 5.4027 5.3968 1 1225400 21164 2392 13849 13854 21000 21000 0.07084118034663334 ILYDERSVHKV 11 Unmodified _ILYDERSVHKV_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7626953125 3 453.585743 1357.7354 -0.22128 -0.00010037 -0.14127 -6.4076E-05 -0.36254 -0.00016445 453.58568322473434 49.614 0.59541 46.733 46.38 46.976 -2.8811 41 16 3 0 0 0 0.8786 1 9384 9384 17.572 17.461 1 4169400 21165 2392 13849 13854 21001 21001 0.07084118034663334 ILYDERSVHKV 11 Unmodified _ILYDERSVHKV_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 340.441126 1357.7354 -0.39242 -0.0001336 0.098576 3.3559E-05 -0.29385 -0.00010004 340.44115391177365 49.618 0.49128 46.737 46.449 46.941 -2.8811 -0.021368 6.4625E-05 NaN 5.4027 36 13 4 NaN NaN NaN NaN 0 NaN NaN 0 3267200 21166 2392 13849 13854 0.07084118034663334 ILYDERSVHKV 11 Unmodified _ILYDERSVHKV_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 453.585743 1357.7354 -0.017868 -8.1046E-06 -0.33288 -0.00015099 -0.35075 -0.0001591 453.5856069442438 49.786 0.55466 46.788 46.548 47.103 -2.999 0.050124 5.779E-05 NaN 17.572 38 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4207500 21167 2392 13849 13854 0.07084118034663334 ILYDERSVHKV 11 Unmodified _ILYDERSVHKV_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 340.441126 1357.7354 0.035186 1.1979E-05 -0.31101 -0.00010588 -0.27582 -9.3901E-05 340.44097307833124 49.871 0.52039 46.872 46.583 47.103 -2.999 0.1138 -0.00049313 NaN 5.4027 40 14 4 NaN NaN NaN NaN 0 NaN NaN 0 3179600 21168 2392 13849 13854 0.07084118034663334 ILYDERSVHKV 11 Unmodified _ILYDERSVHKV_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 453.585743 1357.7354 -0.11482 -5.2079E-05 -0.18934 -8.5881E-05 -0.30415 -0.00013796 453.5856734536582 49.784 0.59132 46.777 46.451 47.042 -3.0068 0.039454 0.00025312 NaN 17.572 38 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3918600 21169 2392 13849 13854 0.07084118034663334 ILYDERSVHKV 11 Unmodified _ILYDERSVHKV_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 340.441126 1357.7354 -0.75938 -0.00025852 0.45352 0.0001544 -0.30586 -0.00010413 340.691979809808 49.764 0.5496 46.758 46.527 47.077 -3.0068 -0.00094578 0.00054797 NaN 5.4027 39 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3638200 21170 2392 13849 13854 0.07084118034663334 ILYDYYKKDWY 11 Unmodified _ILYDYYKKDWY_ 0 0 0 REV__tr|U7STI3|U7STI3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01068PE=4SV=1 REV__tr|U7STI3|U7STI3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01068PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3853149414062 2 785.384842 1568.75513 NaN NaN NaN NaN NaN NaN NaN 171.17 1 166.38 165.88 166.88 -4.7898 0 0 0 0.22632 1 34783 34783 0.58532 0.55911 1 + 21171 25107 13850 13855 21002 21002 -0.006495507452427773 ILYGKIIHL 9 Unmodified _ILYGKIIHL_ 0 0 0 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5646667480469 3 357.23046 1068.66955 NaN NaN NaN NaN NaN NaN NaN 128.61 1 128.61 128.11 129.11 0 0 0 0 0.20699 1 25400 25400 21.537 10.737 1 21172 5935 13851 13856 21003 21003 0.13796373650416172 ILYGKIIHL 9 Unmodified _ILYGKIIHL_ 0 0 0 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.564697265625 3 357.23046 1068.66955 -0.28079 -0.00010031 0.61238 0.00021876 0.33159 0.00011846 357.23052260448344 132.66 0.50134 128.02 127.77 128.27 -4.6399 18 13 2 0 0 0 0.46882 2 26180 26132;26180 21.537 10.737 1 1236300 21173 5935 13851 13856 21004;21005 21005 0.13796373650416172 ILYGKIIHL 9 Unmodified _ILYGKIIHL_ 0 0 0 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5650634765625 3 357.23046 1068.66955 0.045073 1.6102E-05 0.15266 5.4534E-05 0.19773 7.0636E-05 357.23051571761454 132.94 0.43263 128.09 127.81 128.24 -4.8527 19 11 3 0 0 0 0.39189 1 25532 25532 26.268 15.469 1 808580 21174 5935 13851 13856 21006 21006 0.13796373650416172 ILYGKIIHL 9 Unmodified _ILYGKIIHL_ 0 0 0 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5650329589844 3 357.23046 1068.66955 -0.48898 -0.00017468 0.54889 0.00019608 0.059907 2.1401E-05 357.2306178905138 132.92 0.63876 128.12 127.83 128.47 -4.799 26 17 3 0 0 0 0.67174 1 25558 25558 8.1555 1.9497 1 1094100 21175 5935 13851 13856 21007 21007 0.13796373650416172 ILYHCSFSP 9 Unmodified _ILYHCSFSP_ 0 0 0 nc|ENSG00000185261|Q8IV33-3|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;ENSG00000185261|ENST00000682413|KIAA0825;ENST00000504117.1_1_5:93752768-93812878:-|nuORF nc|ENSG00000185261|Q8IV33-3|KIAA0825 nc|ENSG00000185261|Q8IV33-3|KIAA0825 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28271484375 2 533.754953 1065.49535 NaN NaN NaN NaN NaN NaN NaN 48.232 1 45.289 44.789 45.789 -2.9421 0 0 0 0.21065 1 8803 8803 20.454 2.3073 1 21176 6972 13852 13857 21008 21008 -0.0347757483721125 ILYKVFQSVWW 11 Unmodified _ILYKVFQSVWW_ 0 0 0 REV__ENSG00000033170|ENST00000673929|FUT8 REV__ENSG00000033170|ENST00000673929|FUT8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2717590332031 3 490.271096 1467.79146 NaN NaN NaN NaN NaN NaN NaN 161.26 1 161.26 160.76 161.76 0 0 0 0 0.22632 1 32389 32389 0.03141 0.0052036 1 + 21177 14021 13853 13858 21009 21009 0.0762737094212298 ILYKVFQSVWW 11 Unmodified _ILYKVFQSVWW_ 0 0 0 REV__ENSG00000033170|ENST00000673929|FUT8 REV__ENSG00000033170|ENST00000673929|FUT8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2694396972656 3 490.271096 1467.79146 NaN NaN NaN NaN NaN NaN NaN 164.49 1 159.7 159.2 160.2 -4.7898 0 0 0 0.22632 1 32878 32878 0.026206 0 1 + 21178 14021 13853 13858 21010 21010 0.0762737094212298 ILYRQYFYIYK 11 Unmodified _ILYRQYFYIYK_ 0 0 0 REV__ENST00000502773.5_1_4:157683422-157683533:-|nuORF REV__ENST00000502773.5_1_4:157683422-157683533:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4074096679688 2 785.426845 1568.83914 NaN NaN NaN NaN NaN NaN NaN 76.634 1 76.634 76.134 77.134 0 0 0 0 0.23698 1 14893 14893 1.3295 0 1 + 21179 22446 13854 13859 21011 21011 0.07747025142316488 ILYVAIFILS 10 Unmodified _ILYVAIFILS_ 0 0 0 REV__ENST00000487134.5_1_19:54927741-54947306:+|nuORF REV__ENST00000487134.5_1_19:54927741-54947306:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3272705078125 2 576.357368 1150.70018 NaN NaN NaN NaN NaN NaN NaN 129.56 1 124.74 124.24 125.24 -4.817 0 0 0 2.8426 1 24872 24872 0.69767 0.6244 1 + 21180 22251 13855 13860 21012 21012 0.1308610724479422 IMAKVFGY 8 Unmodified _IMAKVFGY_ 0 0 0 REV__SLC9A9|p.N196Mfs*15|1|0.43|ENSG00000181804|chr3:143693254-143693254|T/-|frameshift_variant REV__SLC9A9|p.N196Mfs*15|1|0.43|ENSG00000181804|chr3:143693254-143693254|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.169921875 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 98.332 1 94.063 93.563 94.563 -4.2692 0 0 0 0.21486 1 18795 18795 1.8442 0 1 + 21181 18741 13856 13861 21013 21013 0.02216532002069016 IMAWFKEIN 9 Unmodified _IMAWFKEIN_ 0 0 0 PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant;nc|ENSG00000133401|O15018-2|PDZD2 PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3189697265625 2 576.299527 1150.5845 NaN NaN NaN NaN NaN NaN NaN 93.328 1 93.328 92.828 93.828 0 0 0 0 0.21065 1 18260 18260 20.454 6.5476 1 21182 3801 13857 13862 21014 21014 0.015232601223260644 IMAWFKEIN 9 Unmodified _IMAWFKEIN_ 0 0 0 PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant;nc|ENSG00000133401|O15018-2|PDZD2 PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3275146484375 2 576.299527 1150.5845 NaN NaN NaN NaN NaN NaN NaN 93.388 1 93.388 92.888 93.888 0 0 0 0 0.19679 1 18273 18273 0.12781 0.063827 1 21183 3801 13857 13862 21015 21015 0.015232601223260644 IMDDPAGNSY 10 Unmodified _IMDDPAGNSY_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2849731445312 2 541.726589 1081.43863 -0.002303 -1.2476E-06 -0.30239 -0.00016381 -0.30469 -0.00016506 541.726209196402 64.668 1.2153 64.668 63.994 65.209 0 72 34 4 0 0 0 0.45099 1 12484 12484 43.772 27.925 1 17872000 21184 2547 13858 13863 21016 21016 -0.09883667184408296 IMDDPAGNSY 10 Unmodified _IMDDPAGNSY_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2721557617188 2 541.726589 1081.43863 0.16012 8.6742E-05 -0.26086 -0.00014131 -0.10074 -5.4573E-05 541.7263758793638 68.268 1.3751 65.089 64.178 65.553 -3.1796 78 39 3 0 0 0 0.26842 1 13258 13258 75.761 35.804 1 25260000 21185 2547 13858 13863 21017 21017 -0.09883667184408296 IMDDPAGNSY 10 Unmodified _IMDDPAGNSY_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2728271484375 2 541.726589 1081.43863 0.38079 0.00020628 -0.37542 -0.00020337 0.0053731 2.9107E-06 541.7262709402992 68.64 0.99696 65.104 64.691 65.688 -3.5362 67 27 4 0 0 0 0.26842 1 12885 12885 75.761 35.804 1 23980000 21186 2547 13858 13863 21018 21018 -0.09883667184408296 IMDDPAGNSY 10 Unmodified _IMDDPAGNSY_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2716674804688 2 541.726589 1081.43863 0.4161 0.00022541 -0.54132 -0.00029325 -0.12522 -6.7835E-05 541.7262857139776 68.48 1.1074 65.089 64.49 65.598 -3.3903 87 30 4 0 0 0 0.26842 1 12900 12900 75.761 41.658 1 21028000 21187 2547 13858 13863 21019 21019 -0.09883667184408296 IMDLSVLHSY 10 Unmodified _IMDLSVLHSY_ 0 0 0 REV__ENST00000415277.2_1_7:75104002-75113489:-|nuORF REV__ENST00000415277.2_1_7:75104002-75113489:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2695922851562 2 589.299724 1176.5849 0.37334 0.00022001 -1.2029 -0.00070889 -0.8296 -0.00048888 589.2988043632379 102.66 1.0848 98.471 97.992 99.077 -4.1861 56 30 3 0 0 0 0.70357 1 20125 20125 10.824 0.75 1 5716400 + 21188 21454 13859 13864 21020 21020 0.0036663505152318976 IMEDFVQQRYL 11 Unmodified _IMEDFVQQRYL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2441101074219 3 481.242988 1440.70714 NaN NaN NaN NaN NaN NaN NaN 102.51 1 98.488 97.988 98.988 -4.0212 0 0 0 0.22632 1 19702 19702 0.026206 0 1 21189 6508 13860 13865 21021 21021 0.00441052063092684 IMGEFRTEV 9 Unmodified _IMGEFRTEV_ 0 0 0 ENST00000534336.1_1_11:65268195-65268336:+|nuORF ENST00000534336.1_1_11:65268195-65268336:+|nuORF ENST00000534336.1_1_11:65268195-65268336:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2711181640625 2 541.270967 1080.52738 0.10904 5.9019E-05 1.0942 0.00059223 1.2032 0.00065125 541.271589590923 95.024 1.2113 95.024 94.209 95.42 0 114 34 5 0 0 0 0.0087973 1 18611 18611 107.1 57.167 1 70043000 21190 11005 13861 13866 21022 21022 -0.009662071540560646 IMGEFRTEV 9 Unmodified _IMGEFRTEV_ 0 0 0 ENST00000534336.1_1_11:65268195-65268336:+|nuORF ENST00000534336.1_1_11:65268195-65268336:+|nuORF ENST00000534336.1_1_11:65268195-65268336:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2582397460938 2 541.270967 1080.52738 0.24105 0.00013047 -0.16193 -8.765E-05 0.079112 4.2821E-05 541.2709907703825 99.171 0.79726 95.038 94.679 95.477 -4.1326 68 22 4 0 0 0 0.015383 6 19451 19445;19451;19497;19512;19544;19547 96.936 56.986 1 38552000 21191 11005 13861 13866 21023;21024;21025;21026;21027;21028 21024 -0.009662071540560646 IMGEFRTEV 9 Unmodified _IMGEFRTEV_ 0 0 0 ENST00000534336.1_1_11:65268195-65268336:+|nuORF ENST00000534336.1_1_11:65268195-65268336:+|nuORF ENST00000534336.1_1_11:65268195-65268336:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2710571289062 2 541.270967 1080.52738 0.29297 0.00015857 -0.19513 -0.00010562 0.097832 5.2953E-05 541.2709451177278 99.336 0.79605 95.067 94.682 95.478 -4.2692 72 22 4 0 0 0 0.0087973 3 18983 18939;18983;19029 107.1 61.079 1 45253000 21192 11005 13861 13866 21029;21030;21031 21030 -0.009662071540560646 IMGEFRTEV 9 Unmodified _IMGEFRTEV_ 0 0 0 ENST00000534336.1_1_11:65268195-65268336:+|nuORF ENST00000534336.1_1_11:65268195-65268336:+|nuORF ENST00000534336.1_1_11:65268195-65268336:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2711181640625 2 541.270967 1080.52738 0.2555 0.0001383 -0.022724 -1.23E-05 0.23278 0.000126 541.271006684373 99.045 0.75203 95.089 94.73 95.482 -3.9564 74 21 5 0 0 0 0.0087973 6 19023 18973;18975;19023;19062;19069;19070 107.1 61.079 1 33760000 21193 11005 13861 13866 21032;21033;21034;21035;21036;21037 21034 -0.009662071540560646 IMIYSVSVVA 10 Unmodified _IMIYSVSVVA_ 0 0 0 REV__ENSG00000119737|ENST00000394705|GPR75 REV__ENSG00000119737|ENST00000394705|GPR75 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2691040039062 2 541.301736 1080.58892 NaN NaN NaN NaN NaN NaN NaN 125.95 1 121.36 120.86 121.86 -4.5984 0 0 0 0.22588 1 24831 24831 10.074 0 1 + 21194 15596 13862 13867 21038 21038 0.05184724545210884 IMKGLEFDL 9 Unmodified _IMKGLEFDL_ 0 0 0 REV__nc|ENSG00000078795|Q9NZM6-6|PKD2L2 REV__nc|ENSG00000078795|Q9NZM6-6|PKD2L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2737426757812 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 91.198 1 87.272 86.772 87.772 -3.9251 0 0 0 0.23508 1 17849 17849 11.64 0.81637 1 + 21195 14386 13863 13868 21039 21039 0.02792151511107477 IMKRLIKRYVL 11 Unmodified _IMKRLIKRYVL_ 0 0 0 nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3;nc|ENSG00000069018|Q9HCX4-2|TRPC7;nc|ENSG00000069018|Q9HCX4-3|TRPC7;nc|ENSG00000137672|Q9Y210-2|TRPC6;ENSG00000069018|ENST00000513104|TRPC7;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6 nc|ENSG00000138741|Q13507-3|TRPC3 nc|ENSG00000138741|Q13507-3|TRPC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 717.0177001953125 2 716.962874 1431.9112 NaN NaN NaN NaN NaN NaN NaN 169.71 1 164.92 164.42 165.42 -4.7898 0 0 0 0.23698 1 34391 34391 0.30703 0 1 21196 4206 13864 13869 21040 21040 0.2125166101504874 IMKVIKFV 8 Unmodified _IMKVIKFV_ 0 0 0 REV__ENSG00000039123|ENST00000230640|MTREX REV__ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2734375 2 489.314449 976.614345 0.19526 9.5542E-05 -0.027539 -1.3475E-05 0.16772 8.2067E-05 489.3143554549807 155.1 0.97443 155.1 154.65 155.62 0 58 27 3 0 0 0 0.88282 1 31115 31115 0.69038 0 1 14069000 + 21197 14043 13865 13870 21041 21041 0.1251024385828714 IMKVIKFV 8 Unmodified _IMKVIKFV_ 0 0 0 REV__ENSG00000039123|ENST00000230640|MTREX REV__ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25860595703125 2 489.314449 976.614345 0.30353 0.00014852 -0.18581 -9.0917E-05 0.11772 5.7602E-05 489.3142420016513 161.01 0.88797 155.78 155.37 156.26 -5.2299 54 24 3 0 0 0 8448 1 31297 31297 0.30703 0 1 10607000 + 21198 14043 13865 13870 21042 21042 0.1251024385828714 IMKVIKFV 8 Unmodified _IMKVIKFV_ 0 0 0 REV__ENSG00000039123|ENST00000230640|MTREX REV__ENSG00000039123|ENST00000230640|MTREX MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.314449 976.614345 0.19526 9.5542E-05 -0.027539 -1.3475E-05 0.16772 8.2067E-05 489.3143554549807 155.1 0.97443 155.1 154.65 155.62 0 0 0 NaN 0.69038 58 27 3 NaN NaN NaN NaN 0 NaN NaN 0 14069000 + 21199 14043 13865 13870 0.1251024385828714 IMKWLLFYQLE 11 Unmodified _IMKWLLFYQLE_ 0 0 0 ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ATM|p.T1609*|1|0.23|ENSG00000149311|chr11:108294972-108294973|-/TG|frameshift_variant;ATM|p.G1642Wfs*23|1|0.78|ENSG00000149311|chr11:108297299-108297300|-/T|frameshift_variant;ATM|p.F627Sfs*22|1|0.4|ENSG00000149311|chr11:108252889-108252889|T/-|frameshift_variant;ATM|p.C1838Vfs*8|1|0.42|ENSG00000149311|chr11:108304687-108304687|T/-|frameshift_variant;ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant;ATM|p.I1581Sfs*20|1|0.25|ENSG00000149311|chr11:108293437-108293437|A/-|frameshift_variant;ATM|p.P1587Ffs*13|1|0.08|ENSG00000149311|chr11:108293459-108293462|ACCC/-|frameshift_variant;ATM|p.V1446Cfs*2|1|0.25|ENSG00000149311|chr11:108289697-108289698|-/T|frameshift_variant;ATM|p.K1170Nfs*11|1|0.26|ENSG00000149311|chr11:108281098-108281098|A/-|frameshift_variant;ATM|p.W1026Lfs*22|1|0.36|ENSG00000149311|chr11:108271401-108271402|-/T|frameshift_variant ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4043579101562 2 742.404524 1482.79449 NaN NaN NaN NaN NaN NaN NaN 88.255 1 84.259 83.759 84.759 -3.9953 0 0 0 0.23698 1 16809 16809 2.7352 1.2533 1 21200 258 13866 13871 21043 21043 0.07240878004631668 IMLARMNKIN 10 Unmodified _IMLARMNKIN_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2918701171875 2 602.338661 1202.66277 NaN NaN NaN NaN NaN NaN NaN 164.22 1 159.43 158.93 159.93 -4.7898 0 0 0 0.22583 1 32803 32803 13.906 1.0334 1 21201 6829 13867 13872 21044 21044 0.06954369435902663 IMLVIFSEF 9 Unmodified _IMLVIFSEF_ 0 0 0 REV__SCN9A|p.T1946Nfs*14|1|0.31|ENSG00000169432|chr2:166198802-166198803|-/T|frameshift_variant REV__SCN9A|p.T1946Nfs*14|1|0.31|ENSG00000169432|chr2:166198802-166198803|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 366.8591613769531 3 366.868311 1097.5831 NaN NaN NaN NaN NaN NaN NaN 21.775 1 20.054 19.554 20.554 -1.7211 0 0 0 0.19636 1 3424 3424 2.4985 0 1 + 21202 18103 13868 13873 21045 21045 0.03821626033550274 IMNALQKY 8 Unmodified _IMNALQKY_ 0 0 0 nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENSG00000115947|ENST00000392857|ORC4;CON__Q2YDI2 nc|ENSG00000115947|O43929-2|ORC4 nc|ENSG00000115947|O43929-2|ORC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2606201171875 2 490.76532 979.516088 0.072296 3.548E-05 2.0368 0.00099958 2.1091 0.0010351 490.76579783224383 88.843 0.45483 88.843 88.613 89.068 0 13 12 2 0 0 0 0.96284 1 17311 17311 19.439 8.3245 1 729060 + 21203 688 13869 13874 21046 21046 0.02551015542451296 IMQHHKEG 8 Unmodified _IMQHHKEG_ 0 0 0 nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A;ENSG00000125386|ENST00000637812|FAM193A;ENST00000513898.5_1_4:2696860-2717089:+|nuORF nc|ENSG00000125386|P78312-4|FAM193A nc|ENSG00000125386|P78312-4|FAM193A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2649841308594 2 490.242544 978.470534 NaN NaN NaN NaN NaN NaN NaN 92.731 1 88.806 88.306 89.306 -3.9251 0 0 0 0.21486 1 18163 18163 10.183 0.10947 1 21204 3356 13870 13875 21047 21047 -0.019562099199333716 IMQSSPEFR 9 Unmodified _IMQSSPEFR_ 0 0 0 REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2 REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7682495117188 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 108.28 1 108.28 107.78 108.78 0 0 0 0 0.22962 1 21294 21294 14.838 4.7643 1 + 21205 14869 13871 13876 21048 21048 -0.020390912968423436 IMRGAPAEA 9 Unmodified _IMRGAPAEA_ 0 0 0 REV__ENST00000486212.6_1_2:202531091-202563346:-|nuORF REV__ENST00000486212.6_1_2:202531091-202563346:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2403259277344 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 132.13 1 127.49 126.99 127.99 -4.6399 0 0 0 0.22621 1 26043 26043 15.847 1.0089 1 + 21206 22234 13872 13877 21049 21049 0.003732718485252917 IMSGIAKGVS 10 Unmodified _IMSGIAKGVS_ 0 0 0 tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1 tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1 tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7873840332031 2 481.770603 961.526652 NaN NaN NaN NaN NaN NaN NaN 81.565 1 78.008 77.508 78.508 -3.557 0 0 0 0.21574 1 15931 15931 25.399 3.6527 1 21207 26091 13873 13878 21050 21050 0.04434998196882134 IMSWLRAMSG 10 Unmodified _IMSWLRAMSG_ 0 0 0 REV__ENST00000562237.5_1_16:69166520-69170710:+|nuORF REV__ENST00000562237.5_1_16:69166520-69170710:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3382568359375 2 576.288637 1150.56272 NaN NaN NaN NaN NaN NaN NaN 121.93 1 121.93 121.43 122.43 0 0 0 0 0.22588 1 24036 24036 12.241 0.74595 1 + 21208 20510 13874 13879 21051 21051 -0.006538678979495671 IMVKNPPY 8 Unmodified _IMVKNPPY_ 0 0 0 REV__WDR45B|p.S99Lfs*21|1|0.16|ENSG00000141580|chr17:82627241-82627241|A/-|frameshift_variant REV__WDR45B|p.S99Lfs*21|1|0.16|ENSG00000141580|chr17:82627241-82627241|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2335510253906 2 481.262413 960.510274 NaN NaN NaN NaN NaN NaN NaN 65.412 1 65.412 64.912 65.912 0 0 0 0 0.21486 1 12612 12612 9.3474 2.6243 1 + 21209 16644 13875 13880 21052 21052 0.028439170307706263 IMWWLVAF 8 Unmodified _IMWWLVAF_ 0 0 0 KCNJ8|p.T122*|3|0.35|ENSG00000121361|chr12:21773253-21773254|-/CA|frameshift_variant;ENSG00000121361|ENST00000240662|KCNJ8 KCNJ8|p.T122*|3|0.35|ENSG00000121361|chr12:21773253-21773254|-/CA|frameshift_variant KCNJ8|p.T122*|3|0.35|ENSG00000121361|chr12:21773253-21773254|-/CA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2640991210938 2 533.283149 1064.55174 NaN NaN NaN NaN NaN NaN NaN 145.35 1 140.68 140.18 141.18 -4.6694 0 0 0 0.21486 1 28811 28811 11.114 0.93107 1 21210 3177 13876 13881 21053 21053 0.022050977901017177 IMYIKGASRL 10 Unmodified _IMYIKGASRL_ 0 0 0 REV__SCN5A|p.Y1009Tfs*136|3|0.35|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant REV__SCN5A|p.Y1009Tfs*136|3|0.35|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3319702148438 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 127.43 1 122.81 122.31 123.31 -4.6172 0 0 0 0.22588 1 25129 25129 7.2892 0.56607 1 + 21211 18872 13877 13882 21054 21054 0.08394924422009353 INANKQNEL 9 Unmodified _INANKQNEL_ 0 0 0 REV__ENST00000304698.9_1_2:187605165-187608267:+|nuORF REV__ENST00000304698.9_1_2:187605165-187608267:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.259033203125 2 522.277638 1042.54072 0.037608 1.9642E-05 -0.73376 -0.00038323 -0.69615 -0.00036358 522.2773790418958 95.316 0.58575 95.316 95.042 95.628 0 29 16 2 0 0 0 0.54076 1 18618 18618 17.113 4.8722 1 1865000 + 21212 20426 13878 13883 21055 21055 0.021153669495106442 INANKQNEL 9 Unmodified _INANKQNEL_ 0 0 0 REV__ENST00000304698.9_1_2:187605165-187608267:+|nuORF REV__ENST00000304698.9_1_2:187605165-187608267:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2775268554688 2 522.277638 1042.54072 -0.18668 -9.7497E-05 -0.052153 -2.7238E-05 -0.23883 -0.00012473 522.2777301073187 99.098 0.72791 94.966 94.61 95.338 -4.1326 43 20 3 0 0 0 0.1793 2 19430 19430;19482 39.957 0.0076237 1 5071700 + 21213 20426 13878 13883 21056;21057 21056 0.021153669495106442 INAYNDENEY 10 Unmodified _INAYNDENEY_ 0 0 0 REV__ENST00000461403.1_1_X:63557232-63569902:-|nuORF REV__ENST00000461403.1_1_X:63557232-63569902:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7677612304688 2 622.756932 1243.49931 NaN NaN NaN NaN NaN NaN NaN 70.87 1 70.87 70.37 71.37 0 0 0 0 2.8426 1 13729 13729 0.063865 0.050599 1 + 21214 14816 13879 13884 21058 21058 -0.11269858600462612 INCCCDPDCS 10 Unmodified _INCCCDPDCS_ 0 0 0 nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000464809.5_1_12:111052207-111065748:+|nuORF;ENST00000478122.6_1_12:111052207-111066834:+|nuORF nc|ENSG00000204852|Q2MV58-5|TCTN1 nc|ENSG00000204852|Q2MV58-5|TCTN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 536.6642456054688 2 536.663763 1071.31297 NaN NaN NaN NaN NaN NaN NaN 172.64 1 167.74 167.24 168.24 -4.8977 0 0 0 2.8426 1 34249 34249 0.0013812 0.0008168 1 21215 7616 13880 13885 21059 21059 -0.2198316162816809 INCKKVVRS 9 Unmodified _INCKKVVRS_ 0 0 0 ENST00000369278.4_1_6:96974228-96974306:+|nuORF ENST00000369278.4_1_6:96974228-96974306:+|nuORF ENST00000369278.4_1_6:96974228-96974306:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6973876953125 2 523.810593 1045.60663 NaN NaN NaN NaN NaN NaN NaN 157.59 1 152.32 151.82 152.82 -5.2712 0 0 0 0.23508 1 30568 30568 10.824 2.0785 1 21216 9116 13881 13886 21060 21060 0.0856548459073565 INCMSCYF 8 Unmodified _INCMSCYF_ 0 0 0 REV__ZMAT3|p.V253I|1|0.26|ENSG00000172667|chr3:179025130-179025130|C/T|missense_variant REV__ZMAT3|p.V253I|1|0.26|ENSG00000172667|chr3:179025130-179025130|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2666015625 2 490.687367 979.360181 NaN NaN NaN NaN NaN NaN NaN 142.6 1 137.7 137.2 138.2 -4.8982 0 0 0 0.21486 1 27513 27513 5.7604 1.0044 1 + 21217 25565 13882 13887 21061 21061 -0.13032514294843622 INCSKSLKG 9 Unmodified _INCSKSLKG_ 0 0 0 REV__MACC1|p.N411Tfs*23|2|0.37|ENSG00000183742|chr7:20159129-20159129|T/-|frameshift_variant REV__MACC1|p.N411Tfs*23|2|0.37|ENSG00000183742|chr7:20159129-20159129|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1748352050781 3 317.176027 948.506251 NaN NaN NaN NaN NaN NaN NaN 73.796 1 70.119 69.619 70.619 -3.6764 0 0 0 0.23508 1 13950 13950 2.7352 0.23671 1 + 21218 18857 13883 13888 21062 21062 0.029938275370795964 INDDDDDDDDD 11 Unmodified _INDDDDDDDDD_ 0 0 0 REV__nc|ENSG00000105176|O94763-2|URI1 REV__nc|ENSG00000105176|O94763-2|URI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 641.6805419921875 2 641.197298 1280.38004 0.7548 0.00048398 2.6097 0.0016733 3.3645 0.0021573 641.1998595690221 170.8 0.1696 165.93 165.85 166.01 -4.873 6 4 2 0 0 0 0.96209 1 33824 33824 0.30703 0 1 5575600 + 21219 14965 13884 13889 21063 21063 -0.24893141806524 INDDHHHSI 9 Unmodified _INDDHHHSI_ 0 0 0 REV__ZNF235|p.K317Nfs*154|1|0.5|ENSG00000159917|chr19:44288484-44288484|T/-|frameshift_variant REV__ZNF235|p.K317Nfs*154|1|0.5|ENSG00000159917|chr19:44288484-44288484|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7703247070312 2 544.249412 1086.48427 0.33034 0.00017979 0.026312 1.4321E-05 0.35665 0.00019411 544.2493847833393 122.76 0.76367 122.76 122.37 123.13 0 47 21 3 0 0 0 0.54076 1 24208 24208 34.102 1.9855 1 8486500 + 21220 17387 13885 13890 21064 21064 -0.055512608871367775 INDDHHHSI 9 Unmodified _INDDHHHSI_ 0 0 0 REV__ZNF235|p.K317Nfs*154|1|0.5|ENSG00000159917|chr19:44288484-44288484|T/-|frameshift_variant REV__ZNF235|p.K317Nfs*154|1|0.5|ENSG00000159917|chr19:44288484-44288484|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7760620117188 2 544.249412 1086.48427 0.23631 0.00012861 0.30275 0.00016477 0.53906 0.00029338 544.2495006097978 127.71 0.84471 123.01 122.61 123.45 -4.6998 56 23 3 0 0 0 0.28156 1 24581 24581 39.957 0 1 7468000 + 21221 17387 13885 13890 21065 21065 -0.055512608871367775 INDKISARY 9 Unmodified _INDKISARY_ 0 0 0 REV__tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1 REV__tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201904296875 3 360.532979 1078.57711 0.066411 2.3943E-05 0.44399 0.00016007 0.5104 0.00018401 360.8675729108378 55.397 0.17191 52.262 52.167 52.339 -3.1352 5 4 2 0 0 0 0.87262 1 10241 10241 5.2969 0.39987 1 1149500 + 21222 24865 13886 13891 21066 21066 0.04096243846242942 INDREQKY 8 Unmodified _INDREQKY_ 0 0 0 REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1 REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2770385742188 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 124 1 124 123.5 124.5 0 0 0 0 0.21486 1 24444 24444 8.5933 0.68312 1 + 21223 25251 13887 13892 21067 21067 -0.004609195675357114 INDSISDCQAN 11 Unmodified _INDSISDCQAN_ 0 0 0 KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;KIF21A|p.L1270Sfs*13|1|0.12|ENSG00000139116|chr12:39318174-39318175|-/G|frameshift_variant KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2520751953125 2 590.25096 1178.48737 NaN NaN NaN NaN NaN NaN NaN 83.194 1 83.194 82.694 83.694 0 0 0 0 0.12979 1 16220 16220 31.268 2.1868 1 21224 4222 13888 13893 21068 21068 -0.09473798615294982 INEICSRQRFL 11 Unmodified _INEICSRQRFL_ 0 0 0 REV__nc|ENSG00000105655|Q9NPH2-3|ISYNA1 REV__nc|ENSG00000105655|Q9NPH2-3|ISYNA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2313537597656 3 460.246844 1377.7187 -0.12304 -5.6627E-05 -3.817 -0.0017568 -3.9401 -0.0018134 460.2462186446087 23.066 0.34448 21.612 21.473 21.818 -1.4535 24 9 4 0 0 0 0.96129 1 3690 3690 2.084 2.084 1 701860 + 21225 15007 13889 13894 21069 21069 0.044952938770620676 INEKEKASY 9 Unmodified _INEKEKASY_ 0 0 0 REV__ENST00000513111.1_1_3:123366069-123368027:-|nuORF REV__ENST00000513111.1_1_3:123366069-123368027:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2725830078125 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 100.03 1 96.041 95.541 96.541 -3.9895 0 0 0 0.21469 1 19213 19213 19.257 2.3147 1 + 21226 14190 13890 13895 21070 21070 0.008088313724329055 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3969116210938 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 87.264 1 87.264 86.764 87.764 0 0 0 0 0.23698 1 17033 17033 0.26902 0.26902 1 + 21227 23553 13891 13896 21071 21071 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4008178710938 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 88.234 1 88.234 87.734 88.734 0 0 0 0 0.23698 1 17220 17220 0.26902 0.26902 1 + 21228 23553 13891 13896 21072 21072 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.395263671875 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 131.52 1 131.52 131.02 132.02 0 0 0 0 0.23698 1 25999 25999 0.30703 0.30703 1 + 21229 23553 13891 13896 21073 21073 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4017333984375 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 135.45 1 135.45 134.95 135.95 0 0 0 0 0.22632 1 26831 26831 0.00056442 0.00056442 1 + 21230 23553 13891 13896 21074 21074 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4017333984375 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 135.46 1 135.46 134.96 135.96 0 0 0 0 0.23698 1 26833 26833 1.0715 1.0715 1 + 21231 23553 13891 13896 21075 21075 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3972778320312 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 163.25 1 163.25 162.75 163.75 0 0 0 0 0.23698 1 32887 32887 0.30703 0.30703 1 + 21232 23553 13891 13896 21076 21076 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.397705078125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 167.54 1 167.54 167.04 168.04 0 0 0 0 0.23698 1 34241 34241 1.3295 1.3295 1 + 21233 23553 13891 13896 21077 21077 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3973999023438 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 169.18 1 169.18 168.68 169.68 0 0 0 0 0.23698 1 34713 34713 1.3295 1.0225 1 + 21234 23553 13891 13896 21078 21078 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4005737304688 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 169.9 1 169.9 169.4 170.4 0 0 0 0 0.23698 1 34897 34897 1.3295 1.3295 1 + 21235 23553 13891 13896 21079 21079 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3973388671875 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 172.47 1 172.47 171.97 172.97 0 0 0 0 0.23698 1 35606 35606 1.3295 1.3295 1 + 21236 23553 13891 13896 21080 21080 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3969116210938 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 90.681 1 86.821 86.321 87.321 -3.8595 0 0 0 0.23698 1 17742 17742 0.26902 0.26902 1 + 21237 23553 13891 13896 21081 21081 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3975219726562 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 112.3 1 107.84 107.34 108.34 -4.4539 0 0 0 0.23698 1 22130 22130 0.35063 0.35063 1 + 21238 23553 13891 13896 21082 21082 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3988037109375 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 142.11 1 137.46 136.96 137.96 -4.6493 0 0 0 0.23698 1 28085 28085 0.30703 0.30703 1 + 21239 23553 13891 13896 21083 21083 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3960571289062 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 151.46 1 146.71 146.21 147.21 -4.7523 0 0 0 0.23698 1 30088 30088 0.26902 0.26902 1 + 21240 23553 13891 13896 21084 21084 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3985595703125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 171.49 1 166.7 166.2 167.2 -4.7898 0 0 0 0.23698 1 34872 34872 0.30703 0.03801 1 + 21241 23553 13891 13896 21085 21085 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.39892578125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 173.1 1 168.31 167.81 168.81 -4.7898 0 0 0 0.23698 1 35291 35291 1.0715 1.0715 1 + 21242 23553 13891 13896 21086 21086 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3984985351562 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 174.3 1 169.51 169.01 170.01 -4.7898 0 0 0 0.23698 1 35604 35604 0.30703 0.30703 1 + 21243 23553 13891 13896 21087 21087 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.4114379882812 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 177.59 1 172.8 172.3 173.3 -4.7898 0 0 0 0.23698 1 36323 36323 0.30703 0.30703 1 + 21244 23553 13891 13896 21088 21088 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3951416015625 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 125.68 1 120.91 120.41 121.41 -4.7681 0 0 0 0.23698 1 24120 24120 0.30703 0.30703 1 + 21245 23553 13891 13896 21089 21089 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3974609375 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 142.71 1 137.68 137.18 138.18 -5.0261 0 0 0 0.23698 1 27508 27508 0.30703 0.30703 1 + 21246 23553 13891 13896 21090 21090 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.397705078125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 157.79 1 152.5 152 153 -5.2854 0 0 0 0.23698 1 30624 30624 0.30703 0.30703 1 + 21247 23553 13891 13896 21091 21091 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.399169921875 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 173.06 1 168.16 167.66 168.66 -4.8977 0 0 0 0.23698 1 34350 34350 0.30703 0.30703 1 + 21248 23553 13891 13896 21092 21092 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3988647460938 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 177.33 1 172.46 171.96 172.96 -4.8686 0 0 0 0.23698 1 35287 35287 0.35063 0.35063 1 + 21249 23553 13891 13896 21093 21093 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 563.1829833984375 3 562.601504 1684.78268 0.070372 3.9592E-05 2.4764 0.0013932 2.5468 0.0014328 562.6029758933978 142.12 0.17084 137.09 137 137.17 -5.0261 6 4 2 0 0 0 0.96227 1 27388 27388 0 0 1 3720700 + 21250 23553 13891 13896 21094 21094 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3986206054688 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 146.11 1 141.11 140.61 141.61 -5 0 0 0 0.22632 1 28272 28272 0 0 1 + 21251 23553 13891 13896 21095 21095 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3986206054688 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 146.14 1 141.14 140.64 141.64 -5 0 0 0 0.23698 1 28276 28276 0 0 1 + 21252 23553 13891 13896 21096 21096 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3948974609375 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 163.93 1 158.86 158.36 159.36 -5.0648 0 0 0 0.23698 1 31929 31929 0.30703 0.30703 1 + 21253 23553 13891 13896 21097 21097 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3997192382812 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 166.8 1 161.91 161.41 162.41 -4.8916 0 0 0 0.23698 1 32720 32720 1.0715 1.0715 1 + 21254 23553 13891 13896 21098 21098 -0.03231602694359026 INEKQWYWWFW 11 Unmodified _INEKQWYWWFW_ 0 0 0 REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant REV__FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3997802734375 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 175.49 1 170.6 170.1 171.1 -4.8916 0 0 0 0.23698 1 34978 34978 1.3295 1.3295 1 + 21255 23553 13891 13896 21099 21099 -0.03231602694359026 INFILKIKY 9 Unmodified _INFILKIKY_ 0 0 0 REV__SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant REV__SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3178100585938 2 576.362985 1150.71142 NaN NaN NaN NaN NaN NaN NaN 128.86 1 124.23 123.73 124.73 -4.6292 0 0 0 0.23508 1 25405 25405 4.756 0.81161 1 + 21256 17741 13892 13897 21100 21100 0.1420892933892901 INFKFHDFETW 11 Unmodified _INFKFHDFETW_ 0 0 0 ENSG00000121940|ENST00000369969|CLCC1 ENSG00000121940|ENST00000369969|CLCC1 ENSG00000121940|ENST00000369969|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3706665039062 2 742.353877 1482.6932 NaN NaN NaN NaN NaN NaN NaN 169.48 1 164.69 164.19 165.19 -4.7898 0 0 0 0.2367 1 34333 34333 2.9952 0 1 21257 3199 13893 13898 21101 21101 -0.02883857373740284 INFSDKNID 9 Unmodified _INFSDKNID_ 0 0 0 nc|ENSG00000178125|Q7Z4L9-2|PPP1R42;ENSG00000178125|ENST00000685739|PPP1R42;nc|ENSG00000178125|Q7Z4L9|PPP1R42 nc|ENSG00000178125|Q7Z4L9-2|PPP1R42 nc|ENSG00000178125|Q7Z4L9-2|PPP1R42 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2805786132812 2 533.264196 1064.51384 0.09851 5.2532E-05 -0.19432 -0.00010363 -0.095814 -5.1094E-05 533.2640766688288 125.34 0.88861 125.34 124.86 125.75 0 41 24 2 0 0 0 0.62102 1 24649 24649 11.64 0.81637 1 4802500 21258 6558 13894 13899 21102 21102 -0.015837416616705013 INGKNDKLLH 10 Unmodified _INGKNDKLLH_ 0 0 0 REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1 REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3316650390625 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 138.58 1 138.58 138.08 139.08 0 0 0 0 0.22588 1 27519 27519 12.241 0.74595 1 + 21259 25228 13895 13900 21103 21103 0.07655908145943613 INHKITEEGY 10 Unmodified _INHKITEEGY_ 0 0 0 ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP ENST00000315147.8_1_5:70265933-70281744:-|nuORF ENST00000315147.8_1_5:70265933-70281744:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2889404296875 2 602.303852 1202.59315 NaN NaN NaN NaN NaN NaN NaN 137.29 1 132.45 131.95 132.95 -4.84 0 0 0 0.22588 1 26449 26449 6.7232 0.99131 1 21260 7896 13896 13901 21104 21104 -4.0947075376607245E-05 INIPYVPCF 9 Unmodified _INIPYVPCF_ 0 0 0 REV__TMEM233|p.A49V|1|0.34|ENSG00000224982|chr12:119593994-119593994|C/T|missense_variant REV__TMEM233|p.A49V|1|0.34|ENSG00000224982|chr12:119593994-119593994|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.273681640625 2 533.275521 1064.53649 NaN NaN NaN NaN NaN NaN NaN 169.9 1 165.02 164.52 165.52 -4.873 0 0 0 0.23508 1 33589 33589 12.532 2.4576 1 + 21261 24820 13897 13902 21105 21105 0.006801862022484784 INIYNKGDEN 10 Unmodified _INIYNKGDEN_ 0 0 0 REV__ENST00000469774.1_1_2:191760380-191769916:+|nuORF REV__ENST00000469774.1_1_2:191760380-191769916:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.25634765625 2 590.28566 1178.55677 NaN NaN NaN NaN NaN NaN NaN 162.14 1 162.14 161.64 162.64 0 0 0 0 0.22559 1 32579 32579 17.113 2.2746 1 + 21262 22019 13898 13903 21106 21106 -0.025369716042405344 INKDNSHGEAE 11 Unmodified _INKDNSHGEAE_ 0 0 0 REV__ENSG00000153820|ENST00000392056|SPHKAP REV__ENSG00000153820|ENST00000392056|SPHKAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 607.3592529296875 2 607.275823 1212.53709 NaN NaN NaN NaN NaN NaN NaN 164.21 1 164.21 163.71 164.71 0 0 0 0 0.23018 1 33179 33179 8.1555 1.9497 1 + 21263 17157 13899 13904 21107 21107 -0.06067347614998653 INKEFSNKV 9 Unmodified _INKEFSNKV_ 0 0 0 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant;ADGRL3|p.W832Lfs*13|1|0.39|ENSG00000150471|chr4:61948167-61948168|-/T|frameshift_variant;ADGRL3|p.Y966Lfs*9|1|0.19|ENSG00000150471|chr4:61983464-61983465|-/T|frameshift_variant;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;ADGRL3|p.H1275Lfs*11|1|0.08|ENSG00000150471|chr4:62070322-62070322|A/-|frameshift_variant;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2011413574219 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112.53 1 108.08 107.58 108.58 -4.4539 0 0 0 0.23508 1 22178 22178 4.897 0 1 21264 82 13900 13905 21108 21108 0.0461712798901317 INKGISTTEM 10 Unmodified _INKGISTTEM_ 0 0 0 REV__TGM4|p.L523Tfs*3|1|0.1|ENSG00000163810|chr3:44910324-44910325|-/A|frameshift_variant REV__TGM4|p.L523Tfs*3|1|0.1|ENSG00000163810|chr3:44910324-44910325|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7931518554688 2 547.281531 1092.54851 0.33822 0.0001851 2.0554 0.0011249 2.3936 0.00131 547.283607126679 161.22 0.13835 161.22 161.14 161.27 0 5 3 2 0 0 0 0.91149 1 32380 32380 8.1555 0.8663 1 1337400 + 21265 17615 13901 13906 21109 21109 0.005937581547868831 INKKDPFLFGH 11 Unmodified _INKKDPFLFGH_ 0 0 0 REV__ENST00000588191.5_3_18:11897592-11905871:-|nuORF REV__ENST00000588191.5_3_18:11897592-11905871:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 658.3502197265625 2 658.361505 1314.70846 0.71549 0.00047105 -0.34894 -0.00022973 0.36655 0.00024132 658.8640309617812 165.02 0.13809 160.07 159.98 160.12 -4.9484 5 3 2 0 0 0 0.69278 1 32224 32224 12.241 2.8575 1 13424000 + 21266 23289 13902 13907 21110 21110 0.06369054214110292 INKKRESL 8 Unmodified _INKKRESL_ 0 0 0 REV__LONRF1|p.I553Nfs*3|2|0.18|ENSG00000154359|chr8:12731766-12731767|-/T|frameshift_variant REV__LONRF1|p.I553Nfs*3|2|0.18|ENSG00000154359|chr8:12731766-12731767|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 494.03741455078125 2 494.300916 986.587279 0.28215 0.00013947 0.092389 4.5668E-05 0.37454 0.00018514 494.3008506422 164.8 0.45677 159.73 159.51 159.97 -5.0648 33 12 4 0 0 0 1.0147 1 32114 32114 0.6015 0.6015 1 44564000 + 21267 23804 13903 13908 21111 21111 0.09344851571484014 INKKRESL 8 Unmodified _INKKRESL_ 0 0 0 REV__LONRF1|p.I553Nfs*3|2|0.18|ENSG00000154359|chr8:12731766-12731767|-/T|frameshift_variant REV__LONRF1|p.I553Nfs*3|2|0.18|ENSG00000154359|chr8:12731766-12731767|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 494.300916 986.587279 0.27415 0.00013551 0.35266 0.00017432 0.62682 0.00030984 494.30096283661214 164.48 0.38608 159.69 159.5 159.89 -4.7898 -0.054301 9.5976E-05 NaN 0.6015 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 32464000 + 21268 23804 13903 13908 0.09344851571484014 INKKRESL 8 Unmodified _INKKRESL_ 0 0 0 REV__LONRF1|p.I553Nfs*3|2|0.18|ENSG00000154359|chr8:12731766-12731767|-/T|frameshift_variant REV__LONRF1|p.I553Nfs*3|2|0.18|ENSG00000154359|chr8:12731766-12731767|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 494.300916 986.587279 0.17979 8.8872E-05 0.34687 0.00017146 0.52667 0.00026033 494.30098201752537 164.86 0.34955 159.82 159.63 159.98 -5.0446 0.068321 9.0252E-05 NaN 0.6015 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 34710000 + 21269 23804 13903 13908 0.09344851571484014 INKLKLIKKF 10 Unmodified _INKLKLIKKF_ 0 0 0 REV__ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant REV__ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7529907226562 2 622.926283 1243.83801 0.67871 0.00042279 -2.8784 -0.001793 -2.1996 -0.0013702 623.4250443921857 164.06 0.17203 159 158.86 159.04 -5.0648 5 4 2 0 0 0 0.91149 1 31946 31946 1.4819 0 1 13307000 + 21270 12903 13904 13909 21112 21112 0.2258485556405958 INKLMICK 8 Unmodified _INKLMICK_ 0 0 0 REV__nc|ENSG00000164675|Q8NA54-2|IQUB REV__nc|ENSG00000164675|Q8NA54-2|IQUB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77874755859375 2 481.779916 961.545279 NaN NaN NaN NaN NaN NaN NaN 159.95 1 159.95 159.45 160.45 0 0 0 0 0.22934 1 32116 32116 0.25148 0 1 + 21271 17702 13905 13910 21113 21113 0.06296836567071296 INKLSSQLY 9 Unmodified _INKLSSQLY_ 0 0 0 REV__ENST00000532508.5_1_1:160249625-160254863:-|nuORF REV__ENST00000532508.5_1_1:160249625-160254863:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2824096679688 2 533.300581 1064.58661 0.13554 7.2282E-05 -0.47409 -0.00025283 -0.33856 -0.00018055 533.3004189228963 128.06 0.61121 123.44 123.2 123.81 -4.6213 21 16 2 0 0 0 0.15214 1 25261 25261 43.858 3.901 1 1817900 + 21272 22787 13906 13911 21114 21114 0.056900121317767116 INKLSSQLY 9 Unmodified _INKLSSQLY_ 0 0 0 REV__ENST00000532508.5_1_1:160249625-160254863:-|nuORF REV__ENST00000532508.5_1_1:160249625-160254863:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 533.300581 1064.58661 0.13554 7.2282E-05 -0.47409 -0.00025283 -0.33856 -0.00018055 533.3004189228963 128.06 0.61121 123.44 123.2 123.81 -4.6213 -0.002523 -0.00028525 NaN 43.858 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1817900 + 21273 22787 13906 13911 0.056900121317767116 INKLSSQLY 9 Unmodified _INKLSSQLY_ 0 0 0 REV__ENST00000532508.5_1_1:160249625-160254863:-|nuORF REV__ENST00000532508.5_1_1:160249625-160254863:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 533.300581 1064.58661 0.52752 0.00028132 0.1132 6.0368E-05 0.64071 0.00034169 533.3005903416815 128.26 0.46487 123.44 123.23 123.7 -4.817 0.002523 0.00034116 NaN 43.858 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 881470 + 21274 22787 13906 13911 0.056900121317767116 INKRVKRDLV 10 Unmodified _INKRVKRDLV_ 0 0 0 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;ENSG00000196576|ENST00000359337|PLXNB2 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 620.6696166992188 2 620.896046 1239.77754 1.1719 0.00072761 -1.8907 -0.0011739 -0.71882 -0.00044631 621.3956068055784 163.3 0.20416 158.51 158.41 158.61 -4.7898 6 5 2 0 0 0 0.91149 1 32519 32519 1.3295 0.13619 1 9568100 21275 7284 13907 13912 21115 21115 0.16724138233712438 INLARAFSIF 10 Unmodified _INLARAFSIF_ 0 0 0 L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|109|2|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|109|2|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|109|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.330078125 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 168.83 1 164.04 163.54 164.54 -4.7898 0 0 0 0.22583 1 34153 34153 13.906 0.86358 1 21276 12040 13908 13913 21116 21116 0.08057997639662062 INMLCIEDP 9 Unmodified _INMLCIEDP_ 0 0 0 REV__SULT4A1|p.G78C|1|0.37|ENSG00000130540|chr22:43841870-43841870|C/A|missense_variant REV__SULT4A1|p.G78C|1|0.37|ENSG00000130540|chr22:43841870-43841870|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6923217773438 2 524.246103 1046.47765 -0.0073025 -3.8283E-06 4.1628 0.0021823 4.1555 0.0021785 524.7505417399846 156.73 0.10809 151.94 151.88 151.99 -4.7885 4 2 2 0 0 0 0.79204 1 31155 31155 11.64 0 1 1346700 + 21277 24752 13909 13914 21117 21117 -0.04372658154375131 INPGKYKTY 9 Unmodified _INPGKYKTY_ 0 0 0 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77587890625 2 542.295299 1082.57605 0.30399 0.00016485 0.35736 0.0001938 0.66135 0.00035865 542.2954046670536 127.49 0.66421 122.87 122.47 123.13 -4.6172 39 18 4 0 0 0 0.52414 1 25130 25130 18.135 1.1927 1 2967000 21278 26254 13910 13915 21118 21118 0.038060294773458736 INPGKYKTY 9 Unmodified _INPGKYKTY_ 0 0 0 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.295299 1082.57605 0.32863 0.00017822 0.093902 5.0923E-05 0.42254 0.00022914 542.2955060790009 122.87 0.73328 122.87 122.51 123.24 0 0.047761 -0.00034231 NaN 18.135 42 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3390400 21279 26254 13910 13915 0.038060294773458736 INPGKYKTY 9 Unmodified _INPGKYKTY_ 0 0 0 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.295299 1082.57605 0.30399 0.00016485 0.35736 0.0001938 0.66135 0.00035865 542.2954046670536 127.49 0.66421 122.87 122.47 123.13 -4.6172 0.05258 -5.6566E-05 NaN 18.135 39 18 4 NaN NaN NaN NaN 0 NaN NaN 0 2967000 21280 26254 13910 13915 0.038060294773458736 INPGKYKTY 9 Unmodified _INPGKYKTY_ 0 0 0 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.295299 1082.57605 0.22108 0.00011989 0.45155 0.00024487 0.67263 0.00036476 542.2955067313993 127.57 0.95294 122.77 122.34 123.29 -4.7958 -0.048735 4.5582E-05 NaN 18.135 50 26 3 NaN NaN NaN NaN 0 NaN NaN 0 3547500 21281 26254 13910 13915 0.038060294773458736 INPGKYKTY 9 Unmodified _INPGKYKTY_ 0 0 0 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.295299 1082.57605 0.24357 0.00013209 0.71763 0.00038916 0.9612 0.00052125 542.2954999791898 127.47 0.85043 122.77 122.4 123.25 -4.6998 -0.051606 0.00033417 NaN 18.135 50 23 3 NaN NaN NaN NaN 0 NaN NaN 0 3863200 21282 26254 13910 13915 0.038060294773458736 INQGKELVY 9 Unmodified _INQGKELVY_ 0 0 0 REV__ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant REV__ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2839965820312 2 532.292756 1062.57096 0.49968 0.00026598 -1.0052 -0.00053506 -0.50552 -0.00026908 532.2923409142331 101.09 0.66875 101.09 100.73 101.4 0 49 18 3 0 0 0 0.58804 1 19838 19838 13.906 0.86358 1 6068200 + 21283 18579 13911 13916 21119 21119 0.04217725614716983 INQGKELVY 9 Unmodified _INQGKELVY_ 0 0 0 REV__ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant REV__ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2849731445312 2 532.292756 1062.57096 -0.19664 -0.00010467 -0.04722 -2.5135E-05 -0.24386 -0.0001298 532.292734306061 105.22 0.77666 100.95 100.53 101.31 -4.2638 53 21 3 0 0 0 0.48644 1 20645 20645 20.454 2.3073 1 6230700 + 21284 18579 13911 13916 21120 21120 0.04217725614716983 INQIEAARE 9 Unmodified _INQIEAARE_ 0 0 0 REV__tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1 REV__tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2771606445312 2 522.277638 1042.54072 0.037608 1.9642E-05 -0.73376 -0.00038323 -0.69615 -0.00036358 522.2773790418958 95.316 0.58575 95.316 95.042 95.628 0 29 16 2 0 0 0 0.52396 1 18702 18702 18.146 0.011366 1 1865000 + 21285 25425 13912 13917 21121 21121 0.021153669495106442 INQIEAARE 9 Unmodified _INQIEAARE_ 0 0 0 REV__tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1 REV__tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2781372070312 2 522.277638 1042.54072 -0.18668 -9.7497E-05 -0.052153 -2.7238E-05 -0.23883 -0.00012473 522.2777301073187 99.098 0.72791 94.966 94.61 95.338 -4.1326 43 20 3 0 0 0 0.60061 1 19532 19532 13.042 1.4022 1 5071700 + 21286 25425 13912 13917 21122 21122 0.021153669495106442 INQKAAFPQY 10 Unmodified _INQKAAFPQY_ 0 0 0 nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENSG00000135048|ENST00000377044|CEMIP2 nc|ENSG00000135048|Q9UHN6-2|CEMIP2 nc|ENSG00000135048|Q9UHN6-2|CEMIP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2618408203125 2 590.31148 1178.60841 0.24196 0.00014283 2.8212 0.0016654 3.0632 0.0018082 590.3116016759079 136.8 0.13889 131.97 131.9 132.04 -4.8345 5 3 2 0 0 0 0.74842 1 26356 26356 6.2058 0 1 1067200 21287 3895 13913 13918 21123 21123 0.026248168803249428 INQKKFVIDV 10 Unmodified _INQKKFVIDV_ 0 0 0 ACTR3B-JMJD1C|1|fusion;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENSG00000106526|ENST00000683684|ACTR3C ACTR3B-JMJD1C|1|fusion ACTR3B-JMJD1C|1|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2786865234375 2 602.358431 1202.70231 NaN NaN NaN NaN NaN NaN NaN 162.5 1 162.5 162 163 0 0 0 0 2.8426 1 32676 32676 0.063865 0 1 21288 44 13914 13919 21124 21124 0.1090653598262179 INQLQKQSE 9 Unmodified _INQLQKQSE_ 0 0 0 ENST00000596499.5_2_10:13690166-13694463:+|nuORF ENST00000596499.5_2_10:13690166-13694463:+|nuORF ENST00000596499.5_2_10:13690166-13694463:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7737426757812 2 544.290745 1086.56694 0.34237 0.00018635 -1.9492 -0.0010609 -1.6068 -0.00087459 544.2888375979848 160.29 0.13762 160.29 160.17 160.31 0 5 3 2 0 0 0 0.85111 1 32174 32174 1.4819 0 1 1162900 21289 11666 13915 13920 21125 21125 0.027116361209891693 INREEAVV 8 Unmodified _INREEAVV_ 0 0 0 nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3;ENST00000333554.4_9:40307429-40337427:+|nuORF;ENST00000451450.1_9:40322889-40332468:+|nuORF;ENST00000493965.5_1_9:39078319-39086841:-|nuORF;ENST00000435173.1_9:65632066-65661969:+|nuORF nc|ENSG00000283378|Q9BZ76-2|CNTNAP3 nc|ENSG00000283378|Q9BZ76-2|CNTNAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25604248046875 2 465.256174 928.497795 0.41972 0.00019528 -0.45895 -0.00021353 -0.039232 -1.8253E-05 465.255921268426 44.77 0.66988 44.77 44.459 45.129 0 34 18 2 0 0 0 0.27447 1 8418 8418 37.974 0 1 7942800 21290 2402 13916 13921 21126 21126 0.03068596892092046 INREEAVV 8 Unmodified _INREEAVV_ 0 0 0 nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3;ENST00000333554.4_9:40307429-40337427:+|nuORF;ENST00000451450.1_9:40322889-40332468:+|nuORF;ENST00000493965.5_1_9:39078319-39086841:-|nuORF;ENST00000435173.1_9:65632066-65661969:+|nuORF nc|ENSG00000283378|Q9BZ76-2|CNTNAP3 nc|ENSG00000283378|Q9BZ76-2|CNTNAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2580261230469 2 465.256174 928.497795 -0.12311 -5.7278E-05 0.011768 5.475E-06 -0.11134 -5.1803E-05 465.2561486702916 47.546 0.66132 44.677 44.357 45.018 -2.869 32 18 2 0 0 0 0.25515 1 8940 8940 39.957 3.8303 1 8493400 21291 2402 13916 13921 21127 21127 0.03068596892092046 INREEGVV 8 Unmodified _INREEGVV_ 0 0 0 nc|ENSG00000152910|Q9C0A0-2|CNTNAP4;ENSG00000152910|ENST00000611870|CNTNAP4 nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2286376953125 2 458.248349 914.482145 0.15594 7.1457E-05 0.13627 6.2445E-05 0.2922 0.0001339 458.24838210209754 64.695 0.91254 61.237 60.733 61.646 -3.4581 61 25 3 0 0 0 8448 1 12120 12120 4.2837 1.6406 1 13853000 21292 4945 13917 13922 21128 21128 0.021483103750597365 INRLSKAVLPY 11 Unmodified _INRLSKAVLPY_ 0 0 0 REV__AIP|p.L115Wfs*41|1|0.41|ENSG00000110711|chr11:67489326-67489326|C/-|frameshift_variant REV__AIP|p.L115Wfs*41|1|0.41|ENSG00000110711|chr11:67489326-67489326|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2510986328125 3 425.259079 1272.75541 -0.2425 -0.00010313 -1.6215 -0.00068954 -1.864 -0.00079267 425.25825224765936 20.98 0.27706 19.596 19.444 19.721 -1.3847 10 7 2 0 0 0 0.80759 1 3271 3271 2.6312 1.4164 1 471110 + 21293 12992 13918 13923 21129 21129 0.12993913765262732 INRLSKAVLPY 11 Unmodified _INRLSKAVLPY_ 0 0 0 REV__AIP|p.L115Wfs*41|1|0.41|ENSG00000110711|chr11:67489326-67489326|C/-|frameshift_variant REV__AIP|p.L115Wfs*41|1|0.41|ENSG00000110711|chr11:67489326-67489326|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 425.259079 1272.75541 0.063515 2.701E-05 -1.9143 -0.00081409 -1.8508 -0.00078708 425.25824365879475 19.412 0.20991 19.412 19.276 19.486 0 -0.16513 6.1213E-05 NaN 2.6312 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 552540 + 21294 12992 13918 13923 0.12993913765262732 INRLSKAVLPY 11 Unmodified _INRLSKAVLPY_ 0 0 0 REV__AIP|p.L115Wfs*41|1|0.41|ENSG00000110711|chr11:67489326-67489326|C/-|frameshift_variant REV__AIP|p.L115Wfs*41|1|0.41|ENSG00000110711|chr11:67489326-67489326|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 425.259079 1272.75541 0.2712 0.00011533 -2.4603 -0.0010463 -2.1891 -0.00093095 425.25813204874606 21.198 0.28114 19.723 19.56 19.841 -1.4742 0.14636 -0.00063536 NaN 2.6312 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 660610 + 21295 12992 13918 13923 0.12993913765262732 INRRLHVSV 9 Unmodified _INRRLHVSV_ 0 0 0 REV__ENSG00000154723|ENST00000284971|ATP5PF REV__ENSG00000154723|ENST00000284971|ATP5PF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 366.2196044921875 3 365.22448 1092.65161 -0.3426 -0.00012512 0.35646 0.00013019 0.013858 5.0613E-06 365.2245711815914 13.532 0.34434 13.532 13.411 13.755 0 23 9 4 0 0 0 0.62843 1 1971 1971 0.073264 0 1 9532200 + 21296 17191 13919 13924 21130 21130 0.10899051448291175 INRRRYHKELV 11 Unmodified _INRRRYHKELV_ 0 0 0 REV__ENSG00000204007|ENST00000371763|GLT6D1 REV__ENSG00000204007|ENST00000371763|GLT6D1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3888549804688 2 742.433858 1482.85316 NaN NaN NaN NaN NaN NaN NaN 165.83 1 160.85 160.35 161.35 -4.9811 0 0 0 0.23698 1 32448 32448 2.7352 0 1 + 21297 19506 13920 13925 21131 21131 0.13105115413964086 INRYKWRN 8 Unmodified _INRYKWRN_ 0 0 0 REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 383.880615234375 3 383.880713 1148.62031 -0.8751 -0.00033593 1.0989 0.00042186 0.22384 8.5926E-05 383.88106992566554 12.267 0.31477 11.257 11.172 11.486 -1.0098 20 8 4 0 0 0 8448 1 1734 1734 0.0082765 0 1 7265600 + 21298 24860 13921 13926 21132 21132 0.05194478414182413 INRYKWRN 8 Unmodified _INRYKWRN_ 0 0 0 REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 383.880713 1148.62031 -0.8751 -0.00033593 1.0989 0.00042186 0.22384 8.5926E-05 383.88106992566554 12.267 0.31477 11.257 11.172 11.486 -1.0098 0.082261 0.00013337 NaN 0.0082765 20 8 4 NaN NaN NaN NaN 0 NaN NaN 0 7265600 + 21299 24860 13921 13926 0.05194478414182413 INRYKWRN 8 Unmodified _INRYKWRN_ 0 0 0 REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 REV__tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 383.880713 1148.62031 -0.67664 -0.00025975 0.89718 0.00034441 0.22054 8.4661E-05 383.8810444058037 12.222 0.3004 11.093 11.009 11.309 -1.1293 -0.082261 -9.8978E-05 NaN 0.0082765 14 8 3 NaN NaN NaN NaN 0 NaN NaN 0 4746900 + 21300 24860 13921 13926 0.05194478414182413 INSTKDWLF 9 Unmodified _INSTKDWLF_ 0 0 0 REV__nc|ENSG00000132704|Q96LA5-5|FCRL2 REV__nc|ENSG00000132704|Q96LA5-5|FCRL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2181091308594 3 375.197596 1122.57096 -2.2941 -0.00086075 -0.48669 -0.00018261 -2.7808 -0.0010434 375.1973725385677 14.546 0.23512 13.336 13.246 13.481 -1.2106 15 6 3 0 0 0 0.59831 1 1936 1936 0.073264 0.043981 1 1050200 + 21301 16129 13922 13927 21133 21133 0.014577256146822037 INTALVYSI 9 Unmodified _INTALVYSI_ 0 0 0 REV__ENSG00000177990|ENST00000324472|DPY19L2 REV__ENSG00000177990|ENST00000324472|DPY19L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 497.1451721191406 2 497.2844 992.554247 NaN NaN NaN NaN NaN NaN NaN 165.65 1 160.86 160.36 161.36 -4.7898 0 0 0 0.22193 1 33194 33194 17.113 3.2068 1 + 21302 18583 13923 13928 21134 21134 0.057672247287769096 INTKITLI 8 Unmodified _INTKITLI_ 0 0 0 REV__tr|U7T216|U7T216_FUSNUTIGR03545familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00432PE=4SV=1 REV__tr|U7T216|U7T216_FUSNUTIGR03545familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00432PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2296142578125 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 160.84 1 160.84 160.34 161.34 0 0 0 0 0.21486 1 32297 32297 10.183 0 1 + 21303 25303 13924 13929 21135 21135 0.11936118971038923 INVDKTTCYF 10 Unmodified _INVDKTTCYF_ 0 0 0 REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20 REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2967529296875 2 602.289356 1202.56416 NaN NaN NaN NaN NaN NaN NaN 129.71 1 129.71 129.21 130.21 0 0 0 0 0.22588 1 25629 25629 6.2058 0 1 + 21304 19923 13925 13930 21136 21136 -0.02901955328184158 INVHHHEA 8 Unmodified _INVHHHEA_ 0 0 0 ENSG00000173213|ENST00000308911|TUBB8B ENSG00000173213|ENST00000308911|TUBB8B ENSG00000173213|ENST00000308911|TUBB8B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7374267578125 2 478.738483 955.462413 NaN NaN NaN NaN NaN NaN NaN 127.79 1 123.18 122.68 123.68 -4.6172 0 0 0 0.21486 1 25200 25200 8.5933 1.304 1 21305 6276 13926 13931 21137 21137 -0.017100208450528953 INVKLLRP 8 Unmodified _INVKLLRP_ 0 0 0 REV__CYLC1|p.N205Ffs*7|1|0.15|ENSG00000183035|chrX:83873321-83873322|AA/-|frameshift_variant REV__CYLC1|p.N205Ffs*7|1|0.15|ENSG00000183035|chrX:83873321-83873322|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.5216064453125 3 318.214922 951.622936 NaN NaN NaN NaN NaN NaN NaN 14.804 1 13.593 13.093 14.093 -1.2106 0 0 0 0.2396 1 1992 1992 0.0082765 0 1 + 21306 13624 13927 13932 21138 21138 0.1451893381914715 INVLIPILIPV 11 Unmodified _INVLIPILIPV_ 0 0 0 REV__tr|U7SSS7|U7SSS7_FUSNULysineexporterLysOfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01479PE=4SV=1 REV__tr|U7SSS7|U7SSS7_FUSNULysineexporterLysOfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01479PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.29541015625 2 602.407392 1202.80023 NaN NaN NaN NaN NaN NaN NaN 157.33 1 157.33 156.83 157.83 0 0 0 0 0.22632 1 31575 31575 0 0 1 + 21307 25067 13928 13933 21139 21139 0.20694344578600976 INVLIPILIPV 11 Unmodified _INVLIPILIPV_ 0 0 0 REV__tr|U7SSS7|U7SSS7_FUSNULysineexporterLysOfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01479PE=4SV=1 REV__tr|U7SSS7|U7SSS7_FUSNULysineexporterLysOfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01479PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.27490234375 2 602.407392 1202.80023 NaN NaN NaN NaN NaN NaN NaN 161.66 1 161.66 161.16 162.16 0 0 0 0 0.23634 1 32472 32472 3.2813 1.6287 1 + 21308 25067 13928 13933 21140 21140 0.20694344578600976 INVQMDEN 8 Unmodified _INVQMDEN_ 0 0 0 ENSG00000115159|ENST00000438166|GPD2;ENST00000464846.5_1_2:157435526-157439427:+|nuORF;nc|ENSG00000115159|P43304-2|GPD2 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7689514160156 2 481.716024 961.417496 0.094972 4.575E-05 -0.29464 -0.00014193 -0.19967 -9.6182E-05 481.71577929311076 130.22 0.62524 125.44 125.18 125.8 -4.7725 37 17 3 0 0 0 0.71273 1 25125 25125 12.532 2.4576 1 3406400 21309 2825 13929 13934 21141 21141 -0.0647563249325458 INVSTVGFRNA 11 Unmodified _INVSTVGFRNA_ 0 0 0 PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2545166015625 2 589.319837 1176.62512 0.46321 0.00027298 -1.218 -0.00071779 -0.75479 -0.00044481 589.3191632254178 82.35 0.71737 78.476 78.061 78.779 -3.8736 37 20 2 0 0 0 0.57511 1 15628 15628 19.362 3.2128 1 4880600 21310 12817 13930 13935 21142 21142 0.043873177663272145 INVTEASTIF 10 Unmodified _INVTEASTIF_ 0 0 0 REV__ENSG00000174145|ENST00000309447|NWD2 REV__ENSG00000174145|ENST00000309447|NWD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.790771484375 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 117.48 1 117.48 116.98 117.98 0 0 0 0 0.15474 1 23140 23140 36.127 9.2434 1 + 21311 18395 13931 13936 21143 21143 0.022500020322468117 INWRRYKADDF 11 Unmodified _INWRRYKADDF_ 0 0 0 REV__PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant REV__PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3780517578125 2 742.375675 1482.7368 NaN NaN NaN NaN NaN NaN NaN 99.532 1 99.532 99.032 100.03 0 0 0 0 0.22632 1 19520 19520 0.50596 0 1 + 21312 16881 13932 13937 21144 21144 0.014737521234110318 INWRRYKADDF 11 Unmodified _INWRRYKADDF_ 0 0 0 REV__PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant REV__PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3734741210938 2 742.375675 1482.7368 NaN NaN NaN NaN NaN NaN NaN 169.69 1 164.9 164.4 165.4 -4.7898 0 0 0 0.23379 1 34383 34383 5.2969 0.39987 1 + 21313 16881 13932 13937 21145 21145 0.014737521234110318 INYDSYEWCLE 11 Unmodified _INYDSYEWCLE_ 0 0 0 REV__ENSG00000197888|ENST00000317746|UGT2B17 REV__ENSG00000197888|ENST00000317746|UGT2B17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72332763671875 3 478.867587 1433.58093 NaN NaN NaN NaN NaN NaN NaN 12.39 1 12.39 11.89 12.89 0 0 0 0 0.23698 1 1723 1723 0.094841 0 1 + 21314 19368 13933 13938 21146 21146 -0.11851499232898277 INYHRYSL 8 Unmodified _INYHRYSL_ 0 0 0 REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2872314453125 2 533.277441 1064.54033 NaN NaN NaN NaN NaN NaN NaN 142.34 1 137.69 137.19 138.19 -4.656 0 0 0 0.19954 1 28137 28137 24.674 3.1369 1 + 21315 13945 13934 13939 21147 21147 0.01063992020317528 INYSRDGTR 9 Unmodified _INYSRDGTR_ 0 0 0 ENSG00000162733|ENST00000367921|DDR2 ENSG00000162733|ENST00000367921|DDR2 ENSG00000162733|ENST00000367921|DDR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2734985351562 2 541.272887 1080.53122 NaN NaN NaN NaN NaN NaN NaN 146.67 1 141.56 141.06 142.06 -5.1108 0 0 0 0.19679 1 28370 28370 0.073264 0 1 21316 5361 13935 13940 21148 21148 -0.005824013360097524 IPAIGIVVF 9 Unmodified _IPAIGIVVF_ 0 0 0 REV__SLC46A3|p.L309*|1|0.24|ENSG00000139508|chr13:28712814-28712814|A/-|frameshift_variant REV__SLC46A3|p.L309*|1|0.24|ENSG00000139508|chr13:28712814-28712814|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1683044433594 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 70.354 1 66.887 66.387 67.387 -3.467 0 0 0 0.23508 1 13322 13322 2.9952 1.151 1 + 21317 16522 13936 13941 21149 21149 0.1126532432199383 IPALVKGTLP 10 Unmodified _IPALVKGTLP_ 0 0 0 ENST00000482608.6_1_8:67372619-67408719:+|nuORF;nc|ENSG00000285791|Q8IWW8-2|ADHFE1;ENSG00000147576|ENST00000396623|ADHFE1 ENST00000482608.6_1_8:67372619-67408719:+|nuORF ENST00000482608.6_1_8:67372619-67408719:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 504.8283996582031 2 504.826235 1007.63792 NaN NaN NaN NaN NaN NaN NaN 169.29 1 164.5 164 165 -4.7898 0 0 0 2.8426 1 34285 34285 1.9275 0 1 21318 4710 13937 13942 21150 21150 0.13440380896463466 IPAQQGSEPPQ 11 Unmodified _IPAQQGSEPPQ_ 0 0 0 REV__ENST00000318003.11_1_19:14041204-14041669:+|nuORF REV__ENST00000318003.11_1_19:14041204-14041669:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3286743164062 2 576.288202 1150.56185 NaN NaN NaN NaN NaN NaN NaN 166.2 1 161.25 160.75 161.75 -4.9484 0 0 0 0.22943 1 32540 32540 8.7454 0.58988 1 + 21319 20531 13938 13943 21151 21151 -0.007406677416156526 IPAYLAGGAP 10 Unmodified _IPAYLAGGAP_ 0 0 0 REV__ENSG00000053918|ENST00000155840|KCNQ1 REV__ENSG00000053918|ENST00000155840|KCNQ1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2586975097656 2 465.258185 928.501818 0.01382 6.4298E-06 -0.11041 -5.1371E-05 -0.096593 -4.4941E-05 465.2581044332273 53.42 0.67477 50.332 49.932 50.607 -3.0876 34 18 3 0 0 0 0.7323 1 9797 9797 7.9102 7.9102 1 2264600 + 21320 14100 13939 13944 21152 21152 0.034706863857991266 IPCAFVSH 8 Unmodified _IPCAFVSH_ 0 0 0 REV__nc|ENSG00000145916|Q96G75-2|RMND5B REV__nc|ENSG00000145916|Q96G75-2|RMND5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2161865234375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 68.758 1 68.758 68.258 69.258 0 0 0 0 0.21486 1 13300 13300 10.183 0.83596 1 + 21321 16862 13940 13945 21153 21153 -0.01985498208887293 IPCGWVAK 8 Unmodified _IPCGWVAK_ 0 0 0 REV__ENST00000562017.1_1_16:56642884-56643094:+|nuORF REV__ENST00000562017.1_1_16:56642884-56643094:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2351989746094 2 437.236199 872.457844 NaN NaN NaN NaN NaN NaN NaN 51.209 1 51.209 50.709 51.709 0 0 0 0 0.21486 1 9709 9709 6.3541 0 1 + 21322 23061 13941 13946 21154 21154 0.01651378687813576 IPDSVRTKK 9 Unmodified _IPDSVRTKK_ 0 0 0 REV__nc|ENSG00000070814|Q13428-2|TCOF1 REV__nc|ENSG00000070814|Q13428-2|TCOF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2816772460938 2 522.314023 1042.61349 NaN NaN NaN NaN NaN NaN NaN 166.16 1 161.21 160.71 161.71 -4.9484 0 0 0 0.23508 1 32527 32527 11.64 1.4569 1 + 21323 14268 13942 13947 21155 21155 0.09389120742957857 IPDTSEPVSYH 11 Unmodified _IPDTSEPVSYH_ 0 0 0 nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32 nc|ENSG00000134909|A7KAX9-2|ARHGAP32 nc|ENSG00000134909|A7KAX9-2|ARHGAP32 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7815551757812 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 166.69 1 161.9 161.4 162.4 -4.7898 0 0 0 0.23324 1 33517 33517 5.7319 0 1 21324 3883 13943 13948 21156 21156 -0.039961048070381366 IPEARESSEY 10 Unmodified _IPEARESSEY_ 0 0 0 ENST00000482974.1_1_3:50608553-50608853:+|nuORF;ENSG00000114735|ENST00000232854|HEMK1 ENST00000482974.1_1_3:50608553-50608853:+|nuORF ENST00000482974.1_1_3:50608553-50608853:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2754516601562 2 590.777667 1179.54078 0.13377 7.9029E-05 0.39692 0.00023449 0.53069 0.00031352 590.7780263617411 77.145 0.8127 73.486 73.003 73.815 -3.6588 37 22 2 0 0 0 0.89145 1 14744 14744 8.1555 4.8742 1 2438400 21325 2806 13944 13949 21157 21157 -0.04180677841122815 IPECLEIV 8 Unmodified _IPECLEIV_ 0 0 0 REV__ENSG00000094975|ENST00000263688|SUCO REV__ENSG00000094975|ENST00000263688|SUCO MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.24200439453125 2 458.246429 914.478305 NaN NaN NaN NaN NaN NaN NaN 31.579 1 29.349 28.849 29.849 -2.2305 0 0 0 0.21486 1 5735 5735 9.3474 0 1 + 21326 14600 13945 13950 21158 21158 0.017645045569679496 IPEPLREDP 9 Unmodified _IPEPLREDP_ 0 0 0 ENST00000502875.1_1_4:141563950-141565549:-|nuORF ENST00000502875.1_1_4:141563950-141565549:-|nuORF ENST00000502875.1_1_4:141563950-141565549:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2827758789062 2 533.282389 1064.55022 0.067801 3.6157E-05 0.2287 0.00012196 0.2965 0.00015812 533.2824926249845 86.162 1.3353 86.162 85.539 86.875 0 96 37 4 0 0 0 0.40602 1 16752 16752 25.399 0 1 8528100 21327 10635 13946 13951 21159 21159 0.020531352350417365 IPFILLYKK 9 Unmodified _IPFILLYKK_ 0 0 0 REV__ENST00000396668.7_1_7:12271604-12271805:+|nuORF REV__ENST00000396668.7_1_7:12271604-12271805:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 567.8704223632812 2 567.867903 1133.72125 NaN NaN NaN NaN NaN NaN NaN 169.68 1 169.68 169.18 170.18 0 0 0 0 0.23508 1 34836 34836 8.5933 0.68312 1 + 21328 21283 13947 13952 21160 21160 0.1597411734430807 IPFRGGPTL 9 Unmodified _IPFRGGPTL_ 0 0 0 nc|ENSG00000165816|Q5GFL6-3|VWA2;nc|ENSG00000165816|Q5GFL6-2|VWA2;ENSG00000165816|ENST00000392982|VWA2 nc|ENSG00000165816|Q5GFL6-3|VWA2 nc|ENSG00000165816|Q5GFL6-3|VWA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7342834472656 2 479.279452 956.544351 -0.0069063 -3.31E-06 -2.9635 -0.0014204 -2.9704 -0.0014237 479.27794984714757 76.86 0.16739 73.445 73.389 73.556 -3.4151 6 4 2 0 0 0 0.79204 1 14990 14990 11.64 2.2929 1 892260 21329 5665 13948 13953 21161 21161 0.0643408151404401 IPGALRKLLN 10 Unmodified _IPGALRKLLN_ 0 0 0 REV__ENST00000449182.1_1_7:121568218-121608013:+|nuORF REV__ENST00000449182.1_1_7:121568218-121608013:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7880859375 2 547.855858 1093.69716 NaN NaN NaN NaN NaN NaN NaN 146.29 1 146.29 145.79 146.79 0 0 0 0 0.22588 1 29250 29250 3.9444 0.3479 1 + 21330 21786 13949 13954 21162 21162 0.15406276910675842 IPGLQLNNQDY 11 Unmodified _IPGLQLNNQDY_ 0 0 0 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2528991699219 3 425.550698 1273.63027 -0.33343 -0.00014189 0.31711 0.00013494 -0.016324 -6.9467E-06 425.5507699239358 51.05 0.62912 47.998 47.643 48.272 -3.0517 52 17 4 0 0 0 0.96187 1 9327 9327 3.0723 0 1 7460500 21331 4527 13950 13955 21163 21163 0.004395768382437382 IPGLQLNNQDY 11 Unmodified _IPGLQLNNQDY_ 0 0 0 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 425.550698 1273.63027 0.43732 0.0001861 -0.36408 -0.00015494 0.073238 3.1167E-05 425.5505168651307 47.874 0.52571 47.874 47.577 48.103 0 -0.11377 -0.00055416 NaN 3.0723 38 14 4 NaN NaN NaN NaN 0 NaN NaN 0 4175000 21332 4527 13950 13955 0.004395768382437382 IPGLQLNNQDY 11 Unmodified _IPGLQLNNQDY_ 0 0 0 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 425.550698 1273.63027 -0.30131 -0.00012822 0.30859 0.00013132 0.0072851 3.1002E-06 425.5507744661308 50.881 0.53117 47.999 47.714 48.245 -2.8824 0.011415 0.00030461 NaN 3.0723 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4695400 21333 4527 13950 13955 0.004395768382437382 IPGLQLNNQDY 11 Unmodified _IPGLQLNNQDY_ 0 0 0 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 425.550698 1273.63027 0.010295 4.3812E-06 -0.03993 -1.6992E-05 -0.029635 -1.2611E-05 425.5506842396453 51.125 0.52962 48.079 47.768 48.297 -3.0453 0.091775 -0.00014033 NaN 3.0723 38 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2866900 21334 4527 13950 13955 0.004395768382437382 IPGQGRSTY 9 Unmodified _IPGQGRSTY_ 0 0 0 nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;EIF4G1|p.T436Hfs*40|1|0.21|ENSG00000114867|chr3:184321883-184321884|-/C|frameshift_variant nc|ENSG00000114867|Q04637-4|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2558288574219 2 489.753798 977.493044 0.011669 5.7151E-06 0.22383 0.00010962 0.2355 0.00011534 489.7539412010011 18.017 2.6065 16.706 15.995 18.601 -1.3109 204 74 4 0 0 0 0.5059 1 3223 3223 19.257 1.1106 1 37416000 21335 2815 13951 13956 21164 21164 0.0033971274931445805 IPGRGPTFHLG 11 Unmodified _IPGRGPTFHLG_ 0 0 0 REV__CD6|p.A233Pfs*35|1|0.39|ENSG00000013725|chr11:61008757-61008757|G/-|frameshift_variant REV__CD6|p.A233Pfs*35|1|0.39|ENSG00000013725|chr11:61008757-61008757|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3181762695312 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 114.9 1 114.9 114.4 115.4 0 0 0 0 0.23018 1 22605 22605 8.1555 0.24537 1 + 21336 13334 13952 13957 21165 21165 0.05543942837061877 IPGTKGPPGEL 11 Unmodified _IPGTKGPPGEL_ 0 0 0 REV__nc|ENSG00000130635|P20908-2|COL5A1 REV__nc|ENSG00000130635|P20908-2|COL5A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2623901367188 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 154.23 1 154.23 153.73 154.73 0 0 0 0 0.20718 1 30911 30911 17.113 1.2657 1 + 21337 16020 13953 13958 21166 21166 0.056900121317767116 IPHGGQKL 8 Unmodified _IPHGGQKL_ 0 0 0 REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|341|3|anti-sense REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|341|3|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2510070800781 2 425.250695 848.486836 0.06464 2.7488E-05 0.32653 0.00013886 0.39117 0.00016635 425.25092677641743 61.137 0.31129 57.768 57.656 57.967 -3.3694 13 8 2 0 0 0 0.53444 1 11420 11420 26.341 1.6674 1 726590 + 21338 23616 13954 13959 21167 21167 0.05653239308469438 IPHGGQKL 8 Unmodified _IPHGGQKL_ 0 0 0 REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|341|3|anti-sense REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|341|3|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2509460449219 2 425.250695 848.486836 -0.09931 -4.2232E-05 0.63369 0.00026948 0.53438 0.00022724 425.25087954092646 60.953 0.41636 57.729 57.597 58.013 -3.2237 14 11 2 0 0 0 0.70613 1 11398 11398 13.508 0.97634 1 750560 + 21339 23616 13954 13959 21168 21168 0.05653239308469438 IPHGGQKL 8 Unmodified _IPHGGQKL_ 0 0 0 REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|341|3|anti-sense REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|341|3|anti-sense MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 425.250695 848.486836 0.06464 2.7488E-05 0.32653 0.00013886 0.39117 0.00016635 425.25092677641743 61.137 0.31129 57.768 57.656 57.967 -3.3694 0.019508 -0.00013101 NaN 26.341 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 726590 + 21340 23616 13954 13959 0.05653239308469438 IPHGKGKI 8 Unmodified _IPHGKGKI_ 0 0 0 HEATR5A|p.A970Vfs*19|1|0.07|ENSG00000129493|chr14:31345236-31345237|-/AGCTA|frameshift_variant;ENST00000549185.5_3_14:31803609-31872202:-|nuORF;nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A HEATR5A|p.A970Vfs*19|1|0.07|ENSG00000129493|chr14:31345236-31345237|-/AGCTA|frameshift_variant HEATR5A|p.A970Vfs*19|1|0.07|ENSG00000129493|chr14:31345236-31345237|-/AGCTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2522888183594 2 425.268887 848.523222 NaN NaN NaN NaN NaN NaN NaN 114.13 1 109.66 109.16 110.16 -4.4726 0 0 0 0.21486 1 22489 22489 5.7604 0 1 21341 3568 13955 13960 21169 21169 0.09290116205181675 IPHNAGLK 8 Unmodified _IPHNAGLK_ 0 0 0 REV__tr|U7SW15|U7SW15_FUSNU3-hydroxybutyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01419PE=3SV=1 REV__tr|U7SW15|U7SW15_FUSNU3-hydroxybutyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01419PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25054931640625 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 60.655 1 57.722 57.222 58.222 -2.9333 0 0 0 0.2074 1 11676 11676 19.439 0 1 + 21342 25199 13956 13961 21170 21170 0.056532393084808064 IPHNAGLK 8 Unmodified _IPHNAGLK_ 0 0 0 REV__tr|U7SW15|U7SW15_FUSNU3-hydroxybutyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01419PE=3SV=1 REV__tr|U7SW15|U7SW15_FUSNU3-hydroxybutyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01419PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25115966796875 2 425.250695 848.486836 0.06464 2.7488E-05 0.32653 0.00013886 0.39117 0.00016635 425.25092677641743 61.137 0.31129 57.768 57.656 57.967 -3.3694 13 8 2 0 0 0 0.70613 1 11374 11374 13.508 0 1 726590 + 21343 25199 13956 13961 21171 21171 0.056532393084808064 IPIKIAVGGRE 11 Unmodified _IPIKIAVGGRE_ 0 0 0 REV__TRPM2|p.V508Cfs*3|1|0.06|ENSG00000142185|chr21:44391350-44391350|G/-|frameshift_variant REV__TRPM2|p.V508Cfs*3|1|0.06|ENSG00000142185|chr21:44391350-44391350|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3273315429688 2 576.858598 1151.70264 0.21134 0.00012191 -1.4595 -0.00084195 -1.2482 -0.00072004 576.8581833923528 117.64 0.17735 113.14 113.07 113.25 -4.502 6 4 2 0 0 0 0.92393 1 23203 23203 1.9064 0 1 915500 + 21344 16657 13957 13962 21172 21172 0.1328595570246307 IPILIKKKII 10 Unmodified _IPILIKKKII_ 0 0 0 ENST00000539909.5_1_10:76468199-76468310:+|nuORF ENST00000539909.5_1_10:76468199-76468310:+|nuORF ENST00000539909.5_1_10:76468199-76468310:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2769775390625 2 589.933577 1177.8526 NaN NaN NaN NaN NaN NaN NaN 69.081 1 65.901 65.401 66.401 -3.1796 0 0 0 0.22588 1 13426 13426 0.45834 0.45834 1 21345 11063 13958 13963 21173 21173 0.27078927712227596 IPILVHLLK 9 Unmodified _IPILVHLLK_ 0 0 0 ENSG00000100218|ENST00000216036|RSPH14 ENSG00000100218|ENST00000216036|RSPH14 ENSG00000100218|ENST00000216036|RSPH14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6852416992188 2 523.360245 1044.70594 NaN NaN NaN NaN NaN NaN NaN 169.73 1 169.73 169.23 170.23 0 0 0 0 0.19624 1 34849 34849 0 0 1 21346 1936 13959 13964 21174 21174 0.18537250547115036 IPISAPRTRA 10 Unmodified _IPISAPRTRA_ 0 0 0 ENST00000603175.1_1_2:74730887-74731265:+|nuORF ENST00000603175.1_1_2:74730887-74731265:+|nuORF ENST00000603175.1_1_2:74730887-74731265:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2805786132812 2 541.327465 1080.64038 0.30759 0.00016651 4.1077 0.0022236 4.4153 0.0023901 541.8316567755656 128.05 0.21512 128.05 127.89 128.11 0 6 5 2 0 0 0 0.871 1 25267 25267 14.838 1.3304 1 1754600 21347 11720 13960 13965 21175 21175 0.10328229354126961 IPKARKMI 8 Unmodified _IPKARKMI_ 0 0 0 SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2 SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7274169921875 2 478.807322 955.600092 NaN NaN NaN NaN NaN NaN NaN 139.72 1 134.87 134.37 135.37 -4.8492 0 0 0 0.23711 1 26941 26941 0.0082765 0 1 21348 4089 13961 13966 21176 21176 0.12051591430019926 IPKFYVRAPG 10 Unmodified _IPKFYVRAPG_ 0 0 0 nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000559040.1_1_15:49448112-49518881:+|nuORF nc|ENSG00000156958|Q01415-2|GALK2 nc|ENSG00000156958|Q01415-2|GALK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 574.3152465820312 2 574.334759 1146.65496 NaN NaN NaN NaN NaN NaN NaN 164.02 1 158.98 158.48 159.48 -5.0446 0 0 0 0.22588 1 31953 31953 6.7232 0 1 21349 5111 13962 13967 21177 21177 0.08750301502254842 IPKIQKLLQ 9 Unmodified _IPKIQKLLQ_ 0 0 0 ENST00000425843.1_1_X:120337800-120338163:-|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;nc|ENSG00000109971|P11142-2|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000109971|ENST00000534624|HSPA8 ENST00000425843.1_1_X:120337800-120338163:-|nuORF ENST00000425843.1_1_X:120337800-120338163:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2734985351562 2 540.860609 1079.70667 0.27889 0.00015084 3.6015 0.0019479 3.8804 0.0020987 540.8638025532258 113.31 0.16911 113.31 113.24 113.41 0 5 4 2 0 0 0 0.88278 1 22275 22275 0.52476 0 1 814730 21350 2552 13963 13968 21178 21178 0.17000045196186875 IPLEPLPQ 8 Unmodified _IPLEPLPQ_ 0 0 0 nc|ENSG00000249481|Q496A3-2|SPATS1;ENSG00000249481|ENST00000674044|SPATS1 nc|ENSG00000249481|Q496A3-2|SPATS1 nc|ENSG00000249481|Q496A3-2|SPATS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7682189941406 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 146.67 1 141.56 141.06 142.06 -5.1108 0 0 0 0.2074 1 28368 28368 19.439 2.4967 1 21351 7897 13964 13969 21179 21179 0.06567857045604342 IPLESRKHWIY 11 Unmodified _IPLESRKHWIY_ 0 0 0 REV__nc|ENSG00000162923|Q9H7D7-2|WDR26 REV__nc|ENSG00000162923|Q9H7D7-2|WDR26 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2369689941406 3 481.269866 1440.78777 NaN NaN NaN NaN NaN NaN NaN 110.32 1 110.32 109.82 110.82 0 0 0 0 0.22632 1 21698 21698 0.58532 0.41332 1 + 21352 17538 13965 13970 21180 21180 0.08500701168304658 IPLESRKHWIY 11 Unmodified _IPLESRKHWIY_ 0 0 0 REV__nc|ENSG00000162923|Q9H7D7-2|WDR26 REV__nc|ENSG00000162923|Q9H7D7-2|WDR26 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23602294921875 3 481.269866 1440.78777 NaN NaN NaN NaN NaN NaN NaN 121.45 1 116.76 116.26 117.26 -4.6873 0 0 0 0.22632 1 23316 23316 0.026206 0 1 + 21353 17538 13965 13970 21181 21181 0.08500701168304658 IPLHFLCL 8 Unmodified _IPLHFLCL_ 0 0 0 ENST00000586276.5_1_17:42931463-42937758:-|nuORF ENST00000586276.5_1_17:42931463-42937758:-|nuORF ENST00000586276.5_1_17:42931463-42937758:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7399597167969 2 478.275324 954.536095 NaN NaN NaN NaN NaN NaN NaN 114.17 1 109.7 109.2 110.2 -4.4726 0 0 0 0.21022 1 22498 22498 17.087 3.1805 1 21354 11547 13966 13971 21182 21182 0.05700811273038653 IPLIWLVIK 9 Unmodified _IPLIWLVIK_ 0 0 0 REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|57|1|anti-sense REV__L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|57|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7911376953125 2 547.870446 1093.72634 NaN NaN NaN NaN NaN NaN NaN 67.947 1 64.838 64.338 65.338 -3.1086 0 0 0 0.23508 1 13185 13185 0.6015 0 1 + 21355 23756 13967 13972 21183 21183 0.18322421206926265 IPLPDIDPV 9 Unmodified _IPLPDIDPV_ 0 0 0 ENSG00000134853|ENST00000257290|PDGFRA ENSG00000134853|ENST00000257290|PDGFRA ENSG00000134853|ENST00000257290|PDGFRA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2650146484375 2 489.778951 977.543348 0.17547 8.5939E-05 0.23889 0.000117 0.41435 0.00020294 489.77901820129455 114.39 1.0202 114.39 113.8 114.82 0 54 28 2 0 0 0 0.26282 2 22384 22384;22439 30.225 1.738 1 25414000 21356 3877 13968 13973 21184;21185 21184 0.05367822354469354 IPLPDIDPV 9 Unmodified _IPLPDIDPV_ 0 0 0 ENSG00000134853|ENST00000257290|PDGFRA ENSG00000134853|ENST00000257290|PDGFRA ENSG00000134853|ENST00000257290|PDGFRA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2676696777344 2 489.778951 977.543348 0.35741 0.00017505 -0.022219 -1.0882E-05 0.33519 0.00016417 489.7789265940839 118.43 1.217 113.93 113.32 114.53 -4.502 74 34 3 0 0 0 0.1515 1 23265 23265 1.2148 0 1 33323000 21357 3877 13968 13973 21186 21186 0.05367822354469354 IPLPDIDPV 9 Unmodified _IPLPDIDPV_ 0 0 0 ENSG00000134853|ENST00000257290|PDGFRA ENSG00000134853|ENST00000257290|PDGFRA ENSG00000134853|ENST00000257290|PDGFRA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26513671875 2 489.778951 977.543348 0.18096 8.8629E-05 0.15794 7.7354E-05 0.33889 0.00016598 489.77898901378313 118.39 1.1656 113.98 113.39 114.56 -4.4088 67 32 3 0 0 0 0.37087 1 22868 22868 1.2148 0 1 27140000 21358 3877 13968 13973 21187 21187 0.05367822354469354 IPLVRKLRS 9 Unmodified _IPLVRKLRS_ 0 0 0 nc|ENSG00000128881|Q6IQ55-3|TTBK2;TTBK2|p.N876Kfs*2|2|0.34|ENSG00000128881|chr15:42752618-42752619|-/T|frameshift_variant;nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2 nc|ENSG00000128881|Q6IQ55-3|TTBK2 nc|ENSG00000128881|Q6IQ55-3|TTBK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2616577148438 2 541.36385 1080.71315 NaN NaN NaN NaN NaN NaN NaN 164.02 1 158.97 158.47 159.47 -5.0446 0 0 0 0.23508 1 31952 31952 3.9444 0.3479 1 21359 3546 13969 13974 21188 21188 0.17601983147551437 IPLVRWRQQW 10 Unmodified _IPLVRWRQQW_ 0 0 0 ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1;ASTN1|p.L945Pfs*9|1|0.49|ENSG00000152092|chr1:176894668-176894669|-/G|frameshift_variant;nc|ENSG00000152092|O14525-3|ASTN1;ENST00000281881.7_1_1:176905297-177133812:-|nuORF ENSG00000152092|ENST00000361833|ASTN1 ENSG00000152092|ENST00000361833|ASTN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.52728271484375 3 461.266568 1380.77787 NaN NaN NaN NaN NaN NaN NaN 148.59 1 143.53 143.03 144.03 -5.0595 0 0 0 2.8426 1 28781 28781 0.043787 0 1 21360 4901 13970 13975 21189 21189 0.10271557953547017 IPMRPVRR 8 Unmodified _IPMRPVRR_ 0 0 0 REV__ENSG00000107719|ENST00000263563|PALD1 REV__ENSG00000107719|ENST00000263563|PALD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.21246337890625 3 342.211406 1023.61239 NaN NaN NaN NaN NaN NaN NaN 59.251 1 59.251 58.751 59.751 0 0 0 0 0.21486 1 11352 11352 1.8442 0.6509 1 + 21361 15090 13971 13976 21190 21190 0.10152627893046429 IPPVLPVPP 9 Unmodified _IPPVLPVPP_ 0 0 0 ENSG00000166147|ENST00000316623|FBN1 ENSG00000166147|ENST00000316623|FBN1 ENSG00000166147|ENST00000316623|FBN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1651611328125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 78.821 1 75.016 74.516 75.516 -3.8048 0 0 0 0.23508 1 14950 14950 1.1933 0 1 21362 5691 13972 13977 21191 21191 0.1126532432199383 IPPVLPVPP 9 Unmodified _IPPVLPVPP_ 0 0 0 ENSG00000166147|ENST00000316623|FBN1 ENSG00000166147|ENST00000316623|FBN1 ENSG00000166147|ENST00000316623|FBN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2377014160156 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 78.825 1 75.02 74.52 75.52 -3.8048 0 0 0 0.23508 1 14951 14951 1.1933 0 1 21363 5691 13972 13977 21192 21192 0.1126532432199383 IPQPARQP 8 Unmodified _IPQPARQP_ 0 0 0 ENST00000401088.8_1_1:16722873-16723131:+|nuORF ENST00000401088.8_1_1:16722873-16723131:+|nuORF ENST00000401088.8_1_1:16722873-16723131:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7602844238281 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 150.68 1 145.56 145.06 146.06 -5.1204 0 0 0 0.21323 1 29205 29205 14.582 1.0738 1 21364 9512 13973 13978 21193 21193 0.05176624337184421 IPQWELPP 8 Unmodified _IPQWELPP_ 0 0 0 REV__nc|ENSG00000186919|Q401N2-2|ZACN REV__nc|ENSG00000186919|Q401N2-2|ZACN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26171875 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 119.56 1 115.09 114.59 115.59 -4.467 0 0 0 0.13047 1 23016 23016 6.3914 0 1 + 21365 24212 13974 13979 21194 21194 0.02734972902840127 IPQWELPP 8 Unmodified _IPQWELPP_ 0 0 0 REV__nc|ENSG00000186919|Q401N2-2|ZACN REV__nc|ENSG00000186919|Q401N2-2|ZACN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26519775390625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 120.53 1 116.07 115.57 116.57 -4.467 0 0 0 0.22636 1 23209 23209 1.4551 0 1 + 21366 24212 13974 13979 21195 21195 0.02734972902840127 IPQYAATSSK 10 Unmodified _IPQYAATSSK_ 0 0 0 REV__ENSG00000197299|ENST00000355112|BLM REV__ENSG00000197299|ENST00000355112|BLM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2705688476562 2 533.282389 1064.55022 0.23043 0.00012289 -0.12183 -6.4969E-05 0.1086 5.7916E-05 533.2823100455149 89.907 1.4737 86.129 85.484 86.958 -3.7779 122 41 4 0 0 0 0.38778 1 17260 17260 0.51642 0 1 11397000 + 21367 19320 13975 13980 21196 21196 0.02053135235018999 IPRSELLNEL 10 Unmodified _IPRSELLNEL_ 0 0 0 ENSG00000132300|ENST00000254630|PTCD3;nc|ENSG00000132300|Q96EY7-2|PTCD3 ENSG00000132300|ENST00000254630|PTCD3 ENSG00000132300|ENST00000254630|PTCD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.2276611328125 3 395.227556 1182.66084 NaN NaN NaN NaN NaN NaN NaN 50.921 1 48.039 47.539 48.539 -2.8824 0 0 0 0.22588 1 9667 9667 8.9762 0.82072 1 21368 3713 13976 13981 21197 21197 0.07681355223280661 IPSFNHFQP 9 Unmodified _IPSFNHFQP_ 0 0 0 ENSG00000198108|ENST00000305031|CHSY3 ENSG00000198108|ENST00000305031|CHSY3 ENSG00000198108|ENST00000305031|CHSY3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7940673828125 2 543.771991 1085.52943 NaN NaN NaN NaN NaN NaN NaN 136.58 1 136.58 136.08 137.08 0 0 0 0 0.23508 1 27068 27068 11.64 2.8949 1 21369 7431 13977 13982 21198 21198 -0.009914103539585994 IPSHLSIY 8 Unmodified _IPSHLSIY_ 0 0 0 REV__ENST00000414826.1_1_3:175177932-175205321:+|nuORF REV__ENST00000414826.1_1_3:175177932-175205321:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25811767578125 2 465.258185 928.501818 0.01382 6.4298E-06 -0.11041 -5.1371E-05 -0.096593 -4.4941E-05 465.2581044332273 53.42 0.67477 50.332 49.932 50.607 -3.0876 34 18 3 0 0 0 0.6199 1 9844 9844 20.871 1.6142 1 2264600 + 21370 18573 13978 13983 21199 21199 0.03470686385810495 IPSTQVVY 8 Unmodified _IPSTQVVY_ 0 0 0 ENST00000466698.1_1_1:156130343-156131310:+|nuORF;nc|ENSG00000196189|Q9H3S1-2|SEMA4A;ENSG00000196189|ENST00000368285|SEMA4A ENST00000466698.1_1_1:156130343-156131310:+|nuORF ENST00000466698.1_1_1:156130343-156131310:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7503967285156 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 148.77 1 143.71 143.21 144.21 -5.0595 0 0 0 0.21181 1 28820 28820 15.768 1.1865 1 21371 7243 13979 13984 21200 21200 0.029309801489034726 IPSWMAKF 8 Unmodified _IPSWMAKF_ 0 0 0 nc|ENSG00000134882|Q8NBM4-4|UBAC2;ENST00000480738.1_1_13:99967048-100037586:+|nuORF;nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2 nc|ENSG00000134882|Q8NBM4-4|UBAC2 nc|ENSG00000134882|Q8NBM4-4|UBAC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2561340332031 2 490.257131 978.499709 NaN NaN NaN NaN NaN NaN NaN 120.47 1 120.47 119.97 120.97 0 0 0 0 0.21323 1 23745 23745 14.582 1.0738 1 21372 3879 13980 13985 21201 21201 0.009599343763397883 IPTDQKVY 8 Unmodified _IPTDQKVY_ 0 0 0 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.765625 2 482.260925 962.507297 0.087147 4.2028E-05 0.045107 2.1753E-05 0.13225 6.3781E-05 482.2609172619377 64.178 0.76416 61.18 60.839 61.603 -2.9975 40 21 2 0 0 0 0.47546 1 12415 12415 36.044 10.645 1 4668400 21373 4350 13981 13986 21202 21202 0.02454365177618456 IPTDQKVY 8 Unmodified _IPTDQKVY_ 0 0 0 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77886962890625 2 482.260925 962.507297 0.19268 9.2923E-05 -0.099241 -4.786E-05 0.093441 4.5063E-05 482.26083391876864 64.363 0.76888 61.106 60.744 61.513 -3.2567 50 21 3 0 0 0 0.66066 1 12085 12085 36.044 1.9418 1 4824000 21374 4350 13981 13986 21203 21203 0.02454365177618456 IPTKRQKY 8 Unmodified _IPTKRQKY_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;DOCK5|p.S612Kfs*4|1|0.33|ENSG00000147459|chr8:25325472-25325473|-/C|frameshift_variant;nc|ENSG00000147459|Q9H7D0-2|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.89801025390625 3 345.209948 1032.60801 -0.45711 -0.0001578 0.89019 0.0003073 0.43309 0.00014951 345.21016698485033 14.227 0.13495 14.227 14.109 14.244 0 5 3 2 0 0 0 1.0281 1 2083 2083 0 0 1 359840 21375 4703 13982 13987 21204 21204 0.09301441951151901 IPVHKWCIR 9 Unmodified _IPVHKWCIR_ 0 0 0 ENSG00000185000|ENST00000528718|DGAT1;ENST00000527885.1_1_8:145540848-145541192:-|nuORF;ENST00000524965.5_1_8:145540848-145542370:-|nuORF ENSG00000185000|ENST00000528718|DGAT1 ENSG00000185000|ENST00000528718|DGAT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3192749023438 2 576.328953 1150.64335 NaN NaN NaN NaN NaN NaN NaN 26.965 1 25.183 24.683 25.683 -1.7821 0 0 0 0.19626 1 4777 4777 0.073264 0.069883 1 21376 6951 13983 13988 21205 21205 0.07405781207262407 IPVKIRLSPE 10 Unmodified _IPVKIRLSPE_ 0 0 0 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.316162109375 2 576.360973 1150.70739 NaN NaN NaN NaN NaN NaN NaN 137.39 1 132.47 131.97 132.97 -4.9216 0 0 0 0.22588 1 26411 26411 5.7319 2.1354 1 21377 3286 13984 13989 21206 21206 0.13806839845233299 IPWRKGTV 8 Unmodified _IPWRKGTV_ 0 0 0 REV__ENSG00000115159|ENST00000438166|GPD2 REV__ENSG00000115159|ENST00000438166|GPD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7406005859375 2 478.787444 955.560336 NaN NaN NaN NaN NaN NaN NaN 120.28 1 115.81 115.31 116.31 -4.467 0 0 0 0.21323 1 23159 23159 14.582 2.0501 1 + 21378 15405 13985 13990 21207 21207 0.08077787750949028 IPYDWERMPRW 11 Unmodified _IPYDWERMPRW_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 516.9208374023438 3 516.918728 1547.73435 NaN NaN NaN NaN NaN NaN NaN 171.6 1 166.81 166.31 167.31 -4.7898 0 0 0 0.23698 1 34899 34899 0.50596 0.13928 1 21379 1253 13986 13991 21208 21208 -0.017604196059210153 IQCMSFGL 8 Carbamidomethyl (C) _IQC(Carbamidomethyl (C))MSFGL_ IQC(1)MSFGL IQC(48)MSFGL 0 1 0 REV__ENST00000445908.1_1_3:197177438-197178170:-|nuORF REV__ENST00000445908.1_1_3:197177438-197178170:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7227478027344 2 478.222431 954.430309 0.031053 1.485E-05 -1.0582 -0.00050605 -1.0271 -0.0004912 478.22186531913195 50.681 1.177 47.636 47.191 48.368 -3.0453 96 33 4 0 0 0 0.17453 1 9239 9239 48.346 25.197 1 11589000 + 21380 21756 13987 13992 21209 21209 23 -0.04872892634705295 IQCMSFGL 8 Carbamidomethyl (C) _IQC(Carbamidomethyl (C))MSFGL_ IQC(1)MSFGL IQC(42)MSFGL 0 1 0 REV__ENST00000445908.1_1_3:197177438-197178170:-|nuORF REV__ENST00000445908.1_1_3:197177438-197178170:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72344970703125 2 478.222431 954.430309 -0.059273 -2.8346E-05 -0.97657 -0.00046702 -1.0358 -0.00049537 478.2219006779079 50.779 1.3234 47.728 47.129 48.453 -3.0517 91 37 3 0 0 0 0.23433 1 9268 9268 42.095 13.013 1 11511000 + 21381 21756 13987 13992 21210 21210 23 -0.04872892634705295 IQDLVSEYQ 9 Unmodified _IQDLVSEYQ_ 0 0 0 CON__ENSEMBL:ENSBTAP00000025008 CON__ENSEMBL:ENSBTAP00000025008 CON__ENSEMBL:ENSBTAP00000025008 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.771484375 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 83.741 1 80.133 79.633 80.633 -3.6079 0 0 0 0.21434 1 16373 16373 19.362 1.2156 1 + 21382 645 13988 13993 21211 21211 -0.013868748644881634 IQEHRKLY 8 Unmodified _IQEHRKLY_ 0 0 0 REV__ZNF423|p.Q394Rfs*36|1|0.13|ENSG00000102935|chr16:49637973-49637973|C/-|frameshift_variant REV__ZNF423|p.Q394Rfs*36|1|0.13|ENSG00000102935|chr16:49637973-49637973|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.785400390625 2 543.806365 1085.59818 0.24169 0.00013143 2.2162 0.0012052 2.4579 0.0013366 543.8067738707148 137.51 0.10551 132.87 132.8 132.91 -4.6413 4 2 2 0 0 0 0.9455 1 27135 27135 16.942 3.4344 1 751850 + 21383 14857 13989 13994 21212 21212 0.05880253945770164 IQEKYLAP 8 Unmodified _IQEKYLAP_ 0 0 0 ENST00000477418.2_1_1:27206170-27212721:-|nuORF;ENSG00000142751|ENST00000374135|GPN2 ENST00000477418.2_1_1:27206170-27212721:-|nuORF ENST00000477418.2_1_1:27206170-27212721:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2405700683594 2 481.271293 960.528032 -0.15453 -7.4372E-05 0.48463 0.00023324 0.3301 0.00015887 481.27159998801676 47.617 0.41042 44.667 44.433 44.844 -2.9499 18 11 2 0 0 0 0.9455 1 8678 8678 11.64 0 1 775820 21384 4441 13990 13995 21213 21213 0.046189555572595964 IQFCCCCCCCC 11 Unmodified _IQFCCCCCCCC_ 0 0 0 REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.10675048828125 3 411.105642 1230.2951 NaN NaN NaN NaN NaN NaN NaN 155.67 1 155.67 155.17 156.17 0 0 0 0 0.23698 1 31210 31210 0 0 1 + 21385 23460 13991 13996 21214 21214 -0.31083982742143235 IQFCCCCCCCC 11 Unmodified _IQFCCCCCCCC_ 0 0 0 REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1072692871094 3 411.105642 1230.2951 NaN NaN NaN NaN NaN NaN NaN 27.412 1 25.63 25.13 26.13 -1.7821 0 0 0 0.23698 1 4870 4870 0 0 1 + 21386 23460 13991 13996 21215 21215 -0.31083982742143235 IQFCCCCCCCC 11 Unmodified _IQFCCCCCCCC_ 0 0 0 REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.10687255859375 3 411.105642 1230.2951 NaN NaN NaN NaN NaN NaN NaN 153.47 1 148.25 147.75 148.75 -5.2209 0 0 0 0.23698 1 29746 29746 0 0 1 + 21387 23460 13991 13996 21216 21216 -0.31083982742143235 IQFYDCEY 8 Unmodified _IQFYDCEY_ 0 0 0 tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.283447265625 2 540.720775 1079.427 0.39762 0.000215 0.34435 0.0001862 0.74197 0.0004012 540.7208133538162 66.693 0.65769 63.366 63.061 63.718 -3.3268 29 18 2 0 0 0 0.60622 1 12546 12546 21.747 2.3076 1 1437200 21388 26345 13992 13997 21217 21217 -0.10953864207749575 IQGSELPELT 10 Unmodified _IQGSELPELT_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7835693359375 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 125.71 1 125.71 125.21 126.21 0 0 0 0 0.14075 1 24797 24797 38.176 0 1 21389 4896 13993 13998 21218 21218 0.021096981696246075 IQHAGVQY 8 Unmodified _IQHAGVQY_ 0 0 0 nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000486847.2_1_19:12774617-12777525:-|nuORF;ENST00000600281.1_1_19:12776145-12777515:-|nuORF;ENST00000466794.5_1_19:12769146-12777470:-|nuORF nc|ENSG00000104774|O00754-2|MAN2B1 nc|ENSG00000104774|O00754-2|MAN2B1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2239990234375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 104.12 1 100.06 99.562 100.56 -4.0543 0 0 0 0.21323 1 20021 20021 14.582 1.0738 1 21390 2253 13994 13999 21219 21219 0.0003634506618936939 IQHGSGFGI 9 Unmodified _IQHGSGFGI_ 0 0 0 TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant;nc|ENSG00000143155|O75663-2|TIPRL;ENSG00000143155|ENST00000367833|TIPRL TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23858642578125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 99.774 1 99.774 99.274 100.27 0 0 0 0 0.23508 1 19568 19568 12.532 2.3482 1 21391 4458 13995 14000 21220 21220 0.00036345066200738074 IQHKTLVSR 9 Unmodified _IQHKTLVSR_ 0 0 0 REV__ZNF248|p.R568I|1|0.22|ENSG00000198105|chr10:37831652-37831652|C/A|missense_variant REV__ZNF248|p.R568I|1|0.22|ENSG00000198105|chr10:37831652-37831652|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.2118835449219 3 361.220735 1080.64038 NaN NaN NaN NaN NaN NaN NaN 105.14 1 100.92 100.42 101.42 -4.2183 0 0 0 0.23508 1 20686 20686 0.77653 0.14971 1 + 21392 25571 13996 14001 21221 21221 0.10328229354149698 IQIEEHAIQ 9 Unmodified _IQIEEHAIQ_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;ENST00000508381.1_1_6:82881144-82882279:-|nuORF;nc|ENSG00000005700|Q9P2D0-3|IBTK;ENST00000505222.5_1_6:82881144-82901025:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2608032226562 2 540.787838 1079.56112 0.29054 0.00015712 -0.73812 -0.00039917 -0.44758 -0.00024205 540.7887395473591 132.66 0.17386 132.66 132.55 132.72 0 7 4 2 0 0 0 0.80521 1 26209 26209 15.847 7.937 1 2404300 21393 994 13997 14002 21222 21222 0.024525376093151863 IQIEGLLRHPP 11 Unmodified _IQIEGLLRHPP_ 0 0 0 ENST00000530930.1_1_10:126789276-126826583:-|nuORF;ENST00000494626.6_1_10:126727653-126848967:-|nuORF ENST00000530930.1_1_10:126789276-126826583:-|nuORF ENST00000530930.1_1_10:126789276-126826583:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25360107421875 3 424.918945 1271.73501 -0.14134 -6.0056E-05 0.43089 0.00018309 0.28956 0.00012304 424.91903243705497 81.498 0.79431 77.941 77.442 78.236 -3.557 44 22 3 0 0 0 0.79428 1 15936 15936 4.4062 0.28952 1 2073200 21394 10559 13998 14003 21223 21223 0.11000743105455513 IQINLQYIRL 10 Unmodified _IQINLQYIRL_ 0 0 0 REV__DENND5A|p.K895Sfs*7|2|0.23|ENSG00000184014|chr11:9150132-9150132|T/-|frameshift_variant REV__DENND5A|p.K895Sfs*7|2|0.23|ENSG00000184014|chr11:9150132-9150132|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2444152832031 3 425.259079 1272.75541 -0.2425 -0.00010313 -1.6215 -0.00068954 -1.864 -0.00079267 425.25825224765936 20.98 0.27706 19.596 19.444 19.721 -1.3847 10 7 2 0 0 0 0.76269 1 3286 3286 1.7423 0.14999 1 471110 + 21395 13664 13999 14004 21224 21224 0.12993913765239995 IQKHWRGYR 9 Unmodified _IQKHWRGYR_ 0 0 0 ENSG00000173226|ENST00000310864|IQCB1;nc|ENSG00000173226|Q15051-2|IQCB1 ENSG00000173226|ENST00000310864|IQCB1 ENSG00000173226|ENST00000310864|IQCB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.752197265625 2 622.343981 1242.67341 NaN NaN NaN NaN NaN NaN NaN 179.04 1 179.04 178.54 179.54 0 0 0 0 0.23508 1 37086 37086 0.52476 0.12405 1 21396 6279 14000 14005 21225 21225 0.06177856196813991 IQKYLWWKRYL 11 Unmodified _IQKYLWWKRYL_ 0 0 0 ENSG00000118402|ENST00000369816|ELOVL4 ENSG00000118402|ENST00000369816|ELOVL4 ENSG00000118402|ENST00000369816|ELOVL4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2745971679688 3 532.973161 1595.89765 0.15164 8.0818E-05 -0.33515 -0.00017863 -0.18351 -9.7809E-05 533.3058240238504 146.26 0.20793 141.57 141.44 141.64 -4.6868 7 5 2 0 0 0 0.96225 1 28978 28978 0.08335 0.08335 1 1971600 21397 3032 14001 14006 21226 21226 0.12354126507443652 IQKYLWWKRYL 11 Unmodified _IQKYLWWKRYL_ 0 0 0 ENSG00000118402|ENST00000369816|ELOVL4 ENSG00000118402|ENST00000369816|ELOVL4 ENSG00000118402|ENST00000369816|ELOVL4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.270751953125 3 532.973161 1595.89765 0.24285 0.00012943 -1.3266 -0.00070706 -1.0838 -0.00057763 532.9718882487464 159.68 0.17772 154.89 154.73 154.91 -4.7952 5 4 2 0 0 0 0.89122 1 31752 31752 0.50596 0.47975 1 938060 21398 3032 14001 14006 21227 21227 0.12354126507443652 IQLKSLMNWMI 11 Unmodified _IQLKSLMNWMI_ 0 0 0 REV__RNF41|p.R73W|1|0.62|ENSG00000181852|chr12:56210442-56210442|G/A|missense_variant REV__RNF41|p.R73W|1|0.62|ENSG00000181852|chr12:56210442-56210442|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2342224121094 3 459.58581 1375.7356 0.16344 7.5114E-05 -0.76512 -0.00035164 -0.60168 -0.00027652 459.9197343022368 115.26 0.6427 110.71 110.36 111.01 -4.555 46 17 3 0 0 0 0.73684 1 22111 22111 9.2438 3.0094 1 3360700 + 21399 24572 14002 14007 21228 21228 0.06276078438645527 IQLQNSHIHL 10 Unmodified _IQLQNSHIHL_ 0 0 0 HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant;ENSG00000095951|ENST00000379388|HIVEP1 HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2952880859375 2 601.835654 1201.65676 0.33254 0.00020014 -0.057349 -3.4514E-05 0.27519 0.00016562 601.8357167196974 45.695 0.5133 42.83 42.553 43.067 -2.8653 35 14 3 0 0 0 0.47611 1 8327 8327 6.6304 1.7334 1 3472900 21400 1870 14003 14008 21229 21229 0.06399310520237123 IQMIGEEPGI 10 Unmodified _IQMIGEEPGI_ 0 0 0 REV__PLCE1|p.E2089G|1|0.12|ENSG00000138193|chr10:94316680-94316680|A/G|missense_variant REV__PLCE1|p.E2089G|1|0.12|ENSG00000138193|chr10:94316680-94316680|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7811279296875 2 543.778625 1085.5427 NaN NaN NaN NaN NaN NaN NaN 108.98 1 104.8 104.3 105.3 -4.1826 0 0 0 2.8426 1 20974 20974 0.26539 0 1 + 21401 24479 14004 14009 21230 21230 0.003346596431129001 IQNNAGKPD 9 Unmodified _IQNNAGKPD_ 0 0 0 REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7429504394531 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 32.608 1 30.461 29.961 30.961 -2.1468 0 0 0 0.21469 1 5661 5661 19.257 6.2145 1 + 21402 13845 14005 14010 21231 21231 -0.007208776303286868 IQNNAGKPD 9 Unmodified _IQNNAGKPD_ 0 0 0 REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74359130859375 2 478.743431 955.472308 0.43392 0.00020774 0.049236 2.3571E-05 0.48316 0.00023131 478.74354169731134 32.695 0.21203 30.546 30.452 30.664 -2.1483 8 5 2 0 0 0 0.5059 1 5675 5675 19.257 3.1079 1 262570 + 21403 13845 14005 14010 21232 21232 -0.007208776303286868 IQNWKSPG 8 Unmodified _IQNWKSPG_ 0 0 0 ENST00000489483.5_1_3:48669605-48669995:-|nuORF ENST00000489483.5_1_3:48669605-48669995:-|nuORF ENST00000489483.5_1_3:48669605-48669995:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25689697265625 2 465.245609 928.476666 0.1637 7.616E-05 -0.16827 -7.8286E-05 -0.0045702 -2.1263E-06 465.2453919619796 29.703 0.34232 29.703 29.541 29.884 0 13 9 2 0 0 0 0.56049 1 5318 5318 24.674 1.5255 1 671880 21404 10500 14006 14011 21233 21233 0.009566315832444161 IQNWKSPG 8 Unmodified _IQNWKSPG_ 0 0 0 ENST00000489483.5_1_3:48669605-48669995:-|nuORF ENST00000489483.5_1_3:48669605-48669995:-|nuORF ENST00000489483.5_1_3:48669605-48669995:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24609375 2 465.245609 928.476666 0.24371 0.00011338 -0.22433 -0.00010437 0.019378 9.0153E-06 465.2454754201324 31.75 0.38939 29.723 29.409 29.798 -2.0264 16 10 2 0 0 0 0.56049 1 5492 5492 24.674 1.5255 1 892070 21405 10500 14006 14011 21234 21234 0.009566315832444161 IQNWKSPG 8 Unmodified _IQNWKSPG_ 0 0 0 ENST00000489483.5_1_3:48669605-48669995:-|nuORF ENST00000489483.5_1_3:48669605-48669995:-|nuORF ENST00000489483.5_1_3:48669605-48669995:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.246337890625 2 465.245609 928.476666 0.47915 0.00022292 -0.43522 -0.00020248 0.043934 2.044E-05 465.2454585694922 31.862 0.3144 29.714 29.514 29.829 -2.1483 13 8 2 0 0 0 0.66265 1 5485 5485 18.135 1.1927 1 603700 21406 10500 14006 14011 21235 21235 0.009566315832444161 IQPGSDISI 9 Unmodified _IQPGSDISI_ 0 0 0 nc|ENSG00000175198|P05165-3|PCCA;nc|ENSG00000175198|P05165-2|PCCA;ENSG00000175198|ENST00000376285|PCCA nc|ENSG00000175198|P05165-3|PCCA nc|ENSG00000175198|P05165-3|PCCA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2508544921875 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 118.74 1 114.33 113.83 114.83 -4.4088 0 0 0 0.063411 1 22847 22847 46.021 8.047 1 21407 6393 14007 14012 21236 21236 0.01945774797957256 IQQVYLALFWL 11 Unmodified _IQQVYLALFWL_ 0 0 0 ENSG00000075073|ENST00000373306|TACR2 ENSG00000075073|ENST00000373306|TACR2 ENSG00000075073|ENST00000373306|TACR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24884033203125 3 465.267463 1392.78056 NaN NaN NaN NaN NaN NaN NaN 138.88 1 134.04 133.54 134.54 -4.8492 0 0 0 0.22632 1 26772 26772 0.172 0.14579 1 21408 1508 14008 14013 21237 21237 0.09987968567816097 IQRCTSGYLY 10 Unmodified _IQRCTSGYLY_ 0 0 0 REV__ENST00000412878.2_1_10:53079965-53080385:+|nuORF REV__ENST00000412878.2_1_10:53079965-53080385:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2941284179688 2 602.294973 1202.57539 NaN NaN NaN NaN NaN NaN NaN 98.145 1 93.876 93.376 94.376 -4.2692 0 0 0 2.8426 1 18756 18756 0.043787 0 1 + 21409 21437 14009 14014 21238 21238 -0.017791332340266308 IQRFAQAQ 8 Unmodified _IQRFAQAQ_ 0 0 0 ENSG00000125726|ENST00000245903|CD70;nc|ENSG00000125726|P32970-2|CD70 ENSG00000125726|ENST00000245903|CD70 ENSG00000125726|ENST00000245903|CD70 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2542724609375 2 481.264333 960.514114 NaN NaN NaN NaN NaN NaN NaN 62.435 1 59.065 58.565 59.565 -3.3694 0 0 0 0.10184 1 11653 11653 44.407 4.4497 1 21410 3378 14010 14015 21239 21239 0.03227722848839676 IQRFIGRRKP 10 Unmodified _IQRFIGRRKP_ 0 0 0 REV__ENST00000574343.5_1_17:79862711-79863545:-|nuORF REV__ENST00000574343.5_1_17:79862711-79863545:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 635.9500732421875 2 635.89638 1269.77821 NaN NaN NaN NaN NaN NaN NaN 170.44 1 165.57 165.07 166.07 -4.873 0 0 0 0.22588 1 33729 33729 6.2058 1.3088 1 + 21411 18987 14011 14016 21240 21240 0.1541097767340034 IQRINLRKRRD 11 Unmodified _IQRINLRKRRD_ 0 0 0 nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1 nc|ENSG00000108587|O95249-2|GOSR1 nc|ENSG00000108587|O95249-2|GOSR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 734.4262084960938 2 734.452582 1466.89061 NaN NaN NaN NaN NaN NaN NaN 166.86 1 166.86 166.36 167.36 0 0 0 0 0.23698 1 34043 34043 2.2828 0.19677 1 21412 2488 14012 14017 21241 21241 0.17584206679566705 IQRLQGPKA 9 Unmodified _IQRLQGPKA_ 0 0 0 nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2;ADCY2|p.R914Sfs*9|1|0.46|ENSG00000078295|chr5:7802326-7802327|-/T|frameshift_variant;ENST00000513693.1_1_5:7690761-7690995:+|nuORF nc|ENSG00000078295|Q08462-2|ADCY2 nc|ENSG00000078295|Q08462-2|ADCY2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.2165222167969 3 337.541697 1009.60326 -0.34128 -0.0001152 0.40057 0.00013521 0.05929 2.0013E-05 337.5418019258426 27.804 0.75933 27.804 27.318 28.077 0 48 21 3 0 0 0 0.5428 1 4897 4897 4.897 4.8237 1 1461500 21413 1576 14013 14018 21242 21242 0.09884557808356931 IQRPFLVLPP 10 Unmodified _IQRPFLVLPP_ 0 0 0 nc|ENSG00000151136|A6QL63-5|ABTB3 nc|ENSG00000151136|A6QL63-5|ABTB3 nc|ENSG00000151136|A6QL63-5|ABTB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2679443359375 2 590.366059 1178.71756 NaN NaN NaN NaN NaN NaN NaN 104.07 1 99.726 99.226 100.23 -4.346 0 0 0 0.22588 1 19937 19937 7.2892 0.56607 1 21414 12385 14014 14019 21243 21243 0.13535447570461656 IQRPHLKY 8 Unmodified _IQRPHLKY_ 0 0 0 ENST00000373624.6_1_9:126531826-126692300:-|nuORF ENST00000373624.6_1_9:126531826-126692300:-|nuORF ENST00000373624.6_1_9:126531826-126692300:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 352.5437316894531 3 352.210059 1053.60835 NaN NaN NaN NaN NaN NaN NaN 54.608 1 51.724 51.224 52.224 -2.8837 0 0 0 0.23312 1 10428 10428 0.68139 0 1 21415 9202 14015 14020 21244 21244 0.08368861670965089 IQSLKRKIRKF 11 Unmodified _IQSLKRKIRKF_ 0 0 0 nc|ENSG00000148541|Q8NE31-3|FAM13C;nc|ENSG00000148541|Q8NE31-5|FAM13C;nc|ENSG00000148541|Q8NE31-4|FAM13C;ENSG00000148541|ENST00000618804|FAM13C;nc|ENSG00000148541|Q8NE31-2|FAM13C nc|ENSG00000148541|Q8NE31-3|FAM13C nc|ENSG00000148541|Q8NE31-3|FAM13C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 709.2557983398438 2 708.96172 1415.90889 NaN NaN NaN NaN NaN NaN NaN 169.7 1 164.91 164.41 165.41 -4.7898 0 0 0 0.2367 1 34387 34387 2.9952 1.9238 1 21416 4749 14016 14021 21245 21245 0.21756948601569093 IQSTSTLGP 9 Unmodified _IQSTSTLGP_ 0 0 0 REV__ENST00000475707.5_1_3:15080546-15084512:+|nuORF REV__ENST00000475707.5_1_3:15080546-15084512:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7473449707031 2 452.242732 902.470912 -0.076517 -3.4604E-05 -0.45255 -0.00020466 -0.52907 -0.00023927 452.2427016921787 79.184 3.0473 75.674 75.136 78.183 -3.5102 237 86 6 0 0 0 0.16619 1 15410 15410 41.84 3.8656 1 749490000 + 21417 18558 14017 14022 21246 21246 0.015774882809068913 IQSYLTDAAV 10 Unmodified _IQSYLTDAAV_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.90509033203125 3 360.85724 1079.54989 NaN NaN NaN NaN NaN NaN NaN 9.1841 1 8.1196 7.6196 8.6196 -1.0645 0 0 0 0.22588 1 966 966 0 0 1 + 21418 24099 14018 14023 21247 21247 0.01329715515157659 IQTLLVFQAF 10 Unmodified _IQTLLVFQAF_ 0 0 0 REV__ENSG00000173852|ENST00000638088|DPY19L1 REV__ENSG00000173852|ENST00000638088|DPY19L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.265869140625 2 590.342249 1178.66995 NaN NaN NaN NaN NaN NaN NaN 111.14 1 106.65 106.15 107.15 -4.4915 0 0 0 0.22588 1 21330 21330 6.7232 0 1 + 21419 18378 14019 14024 21248 21248 0.08775748579614628 IQTRVWVLVFF 11 Unmodified _IQTRVWVLVFF_ 0 0 0 ENST00000379589.3_1_13:39917692-39917869:-|nuORF ENST00000379589.3_1_13:39917692-39917869:-|nuORF ENST00000379589.3_1_13:39917692-39917869:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 704.4110717773438 2 704.410998 1406.80744 NaN NaN NaN NaN NaN NaN NaN 168.85 1 163.97 163.47 164.47 -4.873 0 0 0 0.23634 1 33320 33320 3.2813 0.28607 1 21420 9300 14020 14025 21249 21249 0.12031077179017302 IQVKKKKLYL 10 Unmodified _IQVKKKKLYL_ 0 0 0 REV__ENST00000237530.10_1_20:35869751-35869895:+|nuORF REV__ENST00000237530.10_1_20:35869751-35869895:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.764404296875 2 630.923741 1259.83293 NaN NaN NaN NaN NaN NaN NaN 174.83 1 170.04 169.54 170.54 -4.7898 0 0 0 2.8426 1 35731 35731 0.13989 0.13989 1 + 21421 20082 14021 14026 21250 21250 0.21340551701473487 IQVKKKKLYL 10 Unmodified _IQVKKKKLYL_ 0 0 0 REV__ENST00000237530.10_1_20:35869751-35869895:+|nuORF REV__ENST00000237530.10_1_20:35869751-35869895:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.764404296875 2 630.923741 1259.83293 NaN NaN NaN NaN NaN NaN NaN 174.84 1 170.05 169.55 170.55 -4.7898 0 0 0 0.22588 1 35733 35733 1.6526 1.2519 1 + 21422 20082 14021 14026 21251 21251 0.21340551701473487 IQWQWKARYYL 11 Unmodified _IQWQWKARYYL_ 0 0 0 REV__ENST00000472991.5_1_3:160117521-160120513:+|nuORF REV__ENST00000472991.5_1_3:160117521-160120513:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 777.8370971679688 2 777.914436 1553.81432 NaN NaN NaN NaN NaN NaN NaN 171.4 1 166.61 166.11 167.11 -4.7898 0 0 0 0.23698 1 34848 34848 1.1933 0.84271 1 + 21423 22066 14022 14027 21252 21252 0.059563900596003805 IQWWISLP 8 Unmodified _IQWWISLP_ 0 0 0 REV__ENSG00000110446|ENST00000227880|SLC15A3 REV__ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.267333984375 2 521.789653 1041.56475 0.21613 0.00011278 -0.38228 -0.00019947 -0.16615 -8.6696E-05 522.2909964187182 22.699 0.42494 22.699 22.432 22.857 0 25 11 3 0 0 0 0.66265 1 3829 3829 18.135 1.1927 1 944560 + 21424 15203 14023 14028 21253 21253 0.04563252173852561 IQWWISLP 8 Unmodified _IQWWISLP_ 0 0 0 REV__ENSG00000110446|ENST00000227880|SLC15A3 REV__ENSG00000110446|ENST00000227880|SLC15A3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2786865234375 2 521.789653 1041.56475 0.21613 0.00011278 -0.38228 -0.00019947 -0.16615 -8.6696E-05 522.2909964187182 22.699 0.42494 22.699 22.432 22.857 0 25 11 3 0 0 0 0.97173 1 3851 3851 18.135 6.4947 1 944560 + 21425 15203 14023 14028 21254 21254 0.04563252173852561 IQWWISLP 8 Unmodified _IQWWISLP_ 0 0 0 REV__ENSG00000110446|ENST00000227880|SLC15A3 REV__ENSG00000110446|ENST00000227880|SLC15A3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2816162109375 2 521.789653 1041.56475 -0.72325 -0.00037738 -0.37934 -0.00019793 -1.1026 -0.00057532 522.2906901256324 24.107 0.35204 22.573 22.398 22.751 -1.5342 19 9 3 0 0 0 0.81042 1 3933 3933 23.148 6.2061 1 1112400 + 21426 15203 14023 14028 21255 21255 0.04563252173852561 IRAAAKLKSEK 11 Unmodified _IRAAAKLKSEK_ 0 0 0 REV__ENSG00000102595|ENST00000376747|UGGT2 REV__ENSG00000102595|ENST00000376747|UGGT2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 607.8402709960938 2 607.882604 1213.75066 NaN NaN NaN NaN NaN NaN NaN 163.99 1 159.2 158.7 159.7 -4.7898 0 0 0 0.22943 1 32734 32734 8.7454 2.0222 1 + 21427 14843 14024 14029 21256 21256 0.15233029622504546 IRAPAVRTL 9 Unmodified _IRAPAVRTL_ 0 0 0 ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3;PKP3|p.L464Sfs*183|3|0.22|ENSG00000184363|chr11:400077-400077|C/-|frameshift_variant;PKP3|p.L464Pfs*224|1|0.46|ENSG00000184363|chr11:400076-400077|-/C|frameshift_variant ENSG00000184363|ENST00000331563|PKP3 ENSG00000184363|ENST00000331563|PKP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.2127990722656 3 332.881943 995.623999 0.24958 8.308E-05 0.21463 7.1446E-05 0.4642 0.00015453 332.8818428326467 65.958 1.2278 62.5 61.75 62.978 -3.4581 62 34 2 0 0 0 0.069179 1 12361 12361 67.838 36.11 1 4102000 21428 6907 14025 14030 21257 21257 0.1260114818803686 IRAPAVRTL 9 Unmodified _IRAPAVRTL_ 0 0 0 ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3;PKP3|p.L464Sfs*183|3|0.22|ENSG00000184363|chr11:400077-400077|C/-|frameshift_variant;PKP3|p.L464Pfs*224|1|0.46|ENSG00000184363|chr11:400076-400077|-/C|frameshift_variant ENSG00000184363|ENST00000331563|PKP3 ENSG00000184363|ENST00000331563|PKP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 332.881943 995.623999 -0.26582 -8.8486E-05 0.68478 0.00022795 0.41896 0.00013946 332.8819760092487 65.461 1.6018 62.414 61.589 63.191 -3.047 0.015775 0.00015527 NaN 67.838 80 46 2 NaN NaN NaN NaN 0 NaN NaN 0 4995000 21429 6907 14025 14030 0.1260114818803686 IRAPAVRTL 9 Unmodified _IRAPAVRTL_ 0 0 0 ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3;PKP3|p.L464Sfs*183|3|0.22|ENSG00000184363|chr11:400077-400077|C/-|frameshift_variant;PKP3|p.L464Pfs*224|1|0.46|ENSG00000184363|chr11:400076-400077|-/C|frameshift_variant ENSG00000184363|ENST00000331563|PKP3 ENSG00000184363|ENST00000331563|PKP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 332.881943 995.623999 -0.37925 -0.00012625 0.67933 0.00022614 0.30007 9.9889E-05 332.8820395361605 65.565 1.271 62.282 61.623 62.894 -3.2832 -0.11686 0.00014982 NaN 67.838 67 36 2 NaN NaN NaN NaN 0 NaN NaN 0 5043200 21430 6907 14025 14030 0.1260114818803686 IRAPRKRK 8 Unmodified _IRAPRKRK_ 0 0 0 REV__ENST00000609247.1_1_1:101360618-101360855:+|nuORF REV__ENST00000609247.1_1_1:101360618-101360855:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.2326965332031 3 342.233198 1023.67777 NaN NaN NaN NaN NaN NaN NaN 82.817 1 82.817 82.317 83.317 0 0 0 0 0.21486 1 16142 16142 3.5965 1.9439 1 + 21431 23485 14026 14031 21258 21258 0.16687365410416533 IRDYSGLEL 9 Unmodified _IRDYSGLEL_ 0 0 0 tr|U7T3P8|U7T3P8_FUSNURibonucleaseIIIfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00208PE=4SV=1 tr|U7T3P8|U7T3P8_FUSNURibonucleaseIIIfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00208PE=4SV=1 tr|U7T3P8|U7T3P8_FUSNURibonucleaseIIIfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00208PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2805786132812 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 163.95 1 158.91 158.41 159.41 -5.0446 0 0 0 0.23508 1 31933 31933 7.9102 1.187 1 21432 26412 14027 14032 21259 21259 0.020531352350417365 IREIFKEGC 9 Unmodified _IREIFKEGC_ 0 0 0 REV__nc|ENSG00000163214|Q6P158-2|DHX57 REV__nc|ENSG00000163214|Q6P158-2|DHX57 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7859497070312 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 88.81 1 85.06 84.56 85.56 -3.7501 0 0 0 0.19679 1 17004 17004 1.2148 0 1 + 21433 13678 14028 14033 21260 21260 0.015977855998926316 IREKILFVKV 10 Unmodified _IREKILFVKV_ 0 0 0 REV__ENST00000430379.5_1_3:48894685-48894901:-|nuORF REV__ENST00000430379.5_1_3:48894685-48894901:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7645874023438 2 622.908091 1243.80163 NaN NaN NaN NaN NaN NaN NaN 89.373 1 85.329 84.829 85.829 -4.0443 0 0 0 2.8426 1 17029 17029 0.0013812 0 1 + 21434 21607 14029 14034 21261 21261 0.18947978667347343 IRFRFFQPLRL 11 Unmodified _IRFRFFQPLRL_ 0 0 0 ENST00000522293.5_1_5:179225178-179226553:-|nuORF;nc|ENSG00000161013|Q9UQ53-2|MGAT4B;ENSG00000161013|ENST00000292591|MGAT4B;nc|ENSG00000161013|Q9UQ53-3|MGAT4B ENST00000522293.5_1_5:179225178-179226553:-|nuORF ENST00000522293.5_1_5:179225178-179226553:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 498.2979736328125 3 498.301501 1491.88267 NaN NaN NaN NaN NaN NaN NaN 162.66 1 157.52 157.02 158.02 -5.1438 0 0 0 0.22632 1 31614 31614 0.026206 0 1 21435 5280 14030 14035 21262 21262 0.15640679430134696 IRGAKGIRTLL 11 Unmodified _IRGAKGIRTLL_ 0 0 0 ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000183873|Q14524-5|SCN5A ENSG00000007314|ENST00000435607|SCN4A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 599.4551391601562 2 599.393139 1196.77173 NaN NaN NaN NaN NaN NaN NaN 167.64 1 162.75 162.25 163.25 -4.8916 0 0 0 0.22632 1 32994 32994 5.4027 1.5264 1 21436 1021;6877 14031 14036 21263 21263 0.18121039722041132 IRGNLPGQRL 10 Unmodified _IRGNLPGQRL_ 0 0 0 ENSG00000172244|ENST00000306862|C5orf34;ENST00000514462.1_1_5:43505848-43515051:-|nuORF ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21917724609375 3 375.228001 1122.66217 NaN NaN NaN NaN NaN NaN NaN 49.432 1 46.425 45.925 46.925 -3.0068 0 0 0 0.22588 1 9070 9070 12.873 4.7171 1 21437 6202 14032 14037 21264 21264 0.10575034102703285 IRHKQDKWSRQ 11 Unmodified _IRHKQDKWSRQ_ 0 0 0 REV__ENST00000511297.5_1_5:65349463-65349535:+|nuORF REV__ENST00000511297.5_1_5:65349463-65349535:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 494.606689453125 3 494.607652 1480.80113 NaN NaN NaN NaN NaN NaN NaN 164.25 1 159.2 158.7 159.7 -5.0446 0 0 0 0.23698 1 32021 32021 1.3296 0.11481 1 + 21438 22548 14033 14038 21265 21265 0.07995952000214857 IRHKRIHIR 9 Unmodified _IRHKRIHIR_ 0 0 0 ENSG00000196350|ENST00000601693|ZNF729 ENSG00000196350|ENST00000601693|ZNF729 ENSG00000196350|ENST00000601693|ZNF729 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 614.8958129882812 2 614.896715 1227.77888 NaN NaN NaN NaN NaN NaN NaN 179.49 1 179.49 178.99 179.99 0 0 0 0 0.19626 1 37182 37182 0.073264 0 1 21439 7258 14034 14039 21266 21266 0.17409817113093595 IRHLYTVSY 9 Unmodified _IRHLYTVSY_ 0 0 0 REV__L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|48|2|anti-sense REV__L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|48|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3154907226562 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 28.768 1 28.768 28.268 29.268 0 0 0 0 0.23508 1 5120 5120 4.3292 0.73274 1 + 21440 23747 14035 14040 21267 21267 0.04421120742927087 IRHTWLLTRWS 11 Unmodified _IRHTWLLTRWS_ 0 0 0 REV__ENST00000303204.8_1_5:176731744-176731813:+|nuORF REV__ENST00000303204.8_1_5:176731744-176731813:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2666931152344 3 490.277244 1467.8099 NaN NaN NaN NaN NaN NaN NaN 145.07 1 140.4 139.9 140.9 -4.6694 0 0 0 0.22632 1 28749 28749 1.4074 0 1 + 21441 20416 14036 14041 21268 21268 0.09470925636696848 IRIIPQNPD 9 Unmodified _IRIIPQNPD_ 0 0 0 REV__ENSG00000198793|ENST00000361445|MTOR REV__ENSG00000198793|ENST00000361445|MTOR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2635498046875 2 533.306198 1064.59784 NaN NaN NaN NaN NaN NaN NaN 115.04 1 110.73 110.23 111.23 -4.3136 0 0 0 0.21065 1 22150 22150 20.454 5.6154 1 + 21442 19450 14037 14042 21269 21269 0.06812834225888764 IRIMSKIWVQ 10 Unmodified _IRIMSKIWVQ_ 0 0 0 ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2547607421875 3 425.253159 1272.73765 NaN NaN NaN NaN NaN NaN NaN 161.83 1 161.83 161.33 162.33 0 0 0 0 0.22588 1 32508 32508 3.0723 0.44103 1 21443 3779 14038 14043 21270 21270 0.11218875238751025 IRIRERERRER 11 Unmodified _IRIRERERRER_ 0 0 0 REV__ENSG00000137776|ENST00000380516|SLTM REV__ENSG00000137776|ENST00000380516|SLTM MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.396728515625 2 784.963846 1567.91314 NaN NaN NaN NaN NaN NaN NaN 128.24 1 123.5 123 124 -4.7408 0 0 0 0.23698 1 24674 24674 2.086 0.75648 1 + 21444 16408 14039 14044 21271 21271 0.15189806077205503 IRKEKVEKDK 10 Unmodified _IRKEKVEKDK_ 0 0 0 SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.G1860Efs*9|1|0.33|ENSG00000065526|chr1:15931816-15931816|G/-|frameshift_variant;SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant;ENSG00000065526|ENST00000375759|SPEN;SPEN|p.I1052Sfs*40|1|0.35|ENSG00000065526|chr1:15929388-15929388|A/-|frameshift_variant;SPEN|p.I1159Lfs*28|1|0.25|ENSG00000065526|chr1:15929710-15929710|A/-|frameshift_variant SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2534484863281 3 424.925988 1271.75613 -1.8833 -0.00080028 3.6564 0.0015537 1.773 0.0007534 425.26212843486644 13.017 0.16868 11.896 11.755 11.923 -1.1206 6 4 2 0 0 0 0.76577 1 1588 1588 0.77653 0.27058 1 83475 21445 25781 14040 14045 21272 21272 0.13112708414291774 IRKELWVRWWR 11 Unmodified _IRKELWVRWWR_ 0 0 0 REV__ENST00000519528.1_1_8:103299768-103305927:-|nuORF REV__ENST00000519528.1_1_8:103299768-103305927:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77685546875 3 543.315921 1626.92593 0.1275 6.9275E-05 -0.61213 -0.00033258 -0.48463 -0.00026331 543.649725208852 146.17 0.14282 141.06 140.96 141.11 -5.1108 5 3 2 0 0 0 0.88957 1 28257 28257 3.0723 2.5663 1 3140900 + 21446 22618 14041 14046 21273 21273 0.1375486920737785 IRKLKPGAIKQ 11 Unmodified _IRKLKPGAIKQ_ 0 0 0 REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1 REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 626.6024169921875 2 626.416614 1250.81868 NaN NaN NaN NaN NaN NaN NaN 167.73 1 162.78 162.28 163.28 -4.948 0 0 0 0.22632 1 33023 33023 0.58532 0 1 + 21447 25264 14042 14047 21274 21274 0.20329899273156116 IRKRHGLLQVK 11 Unmodified _IRKRHGLLQVK_ 0 0 0 REV__ENSG00000064999|ENST00000360359|ANKS1A REV__ENSG00000064999|ENST00000360359|ANKS1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.6310119628906 3 449.961367 1346.86227 0.13712 6.1699E-05 0.7316 0.00032919 0.86873 0.00039089 449.96156182021076 26.987 0.35117 25.352 25.247 25.598 -1.6347 15 9 2 0 0 0 0.60781 1 4510 4510 7.0341 5.579 1 3099700 + 21448 14179 14043 14048 21275 21275 0.20271508770292712 IRKRHGLLQVK 11 Unmodified _IRKRHGLLQVK_ 0 0 0 REV__ENSG00000064999|ENST00000360359|ANKS1A REV__ENSG00000064999|ENST00000360359|ANKS1A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 449.961367 1346.86227 0.13712 6.1699E-05 0.7316 0.00032919 0.86873 0.00039089 449.96156182021076 26.987 0.35117 25.352 25.247 25.598 -1.6347 0.028699 -0.00041111 NaN 7.0341 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3099700 + 21449 14179 14043 14048 0.20271508770292712 IRKRHGLLQVK 11 Unmodified _IRKRHGLLQVK_ 0 0 0 REV__ENSG00000064999|ENST00000360359|ANKS1A REV__ENSG00000064999|ENST00000360359|ANKS1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 449.961367 1346.86227 0.090563 4.075E-05 1.3334 0.00059996 1.4239 0.00064071 449.96188725311043 27.217 0.56582 25.294 25.226 25.791 -1.9222 -0.028699 0.00040119 NaN 7.0341 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2480000 + 21450 14179 14043 14048 0.20271508770292712 IRKTKLHRY 9 Unmodified _IRKTKLHRY_ 0 0 0 REV__nc|ENSG00000163714|O15042-3|U2SURP REV__nc|ENSG00000163714|O15042-3|U2SURP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.2988586425781 3 405.58753 1213.74076 -0.31016 -0.0001258 -1.0151 -0.00041172 -1.3253 -0.00053751 405.587089017757 60.879 0.63327 60.879 60.591 61.224 0 51 17 4 0 0 0 0.87918 1 11621 11621 1.0715 0.10919 1 12623000 + 21451 24131 14044 14049 21276 21276 0.14243886407780337 IRKTKLHRY 9 Unmodified _IRKTKLHRY_ 0 0 0 REV__nc|ENSG00000163714|O15042-3|U2SURP REV__nc|ENSG00000163714|O15042-3|U2SURP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 405.58753 1213.74076 -0.13092 -5.31E-05 -1.1066 -0.00044884 -1.2376 -0.00050194 405.58704522750884 63.539 0.79723 60.541 60.185 60.982 -2.9975 -0.12761 5.323E-05 NaN 1.0715 75 22 5 NaN NaN NaN NaN 0 NaN NaN 0 25083000 + 21452 24131 14044 14049 0.14243886407780337 IRKTKLHRY 9 Unmodified _IRKTKLHRY_ 0 0 0 REV__nc|ENSG00000163714|O15042-3|U2SURP REV__nc|ENSG00000163714|O15042-3|U2SURP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 405.58753 1213.74076 0.17149 6.9553E-05 -1.4167 -0.00057458 -1.2452 -0.00050503 405.5869203860453 64.082 0.74301 60.667 60.32 61.064 -3.4158 -0.002134 -0.00032401 NaN 1.0715 63 20 4 NaN NaN NaN NaN 0 NaN NaN 0 17145000 + 21453 24131 14044 14049 0.14243886407780337 IRKTKLHRY 9 Unmodified _IRKTKLHRY_ 0 0 0 REV__nc|ENSG00000163714|O15042-3|U2SURP REV__nc|ENSG00000163714|O15042-3|U2SURP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 405.58753 1213.74076 -0.20717 -8.4027E-05 -1.0996 -0.00044598 -1.3068 -0.00053 405.5870485294752 63.845 0.7197 60.588 60.263 60.983 -3.2567 -0.080698 6.1806E-05 NaN 1.0715 67 20 5 NaN NaN NaN NaN 0 NaN NaN 0 21787000 + 21454 24131 14044 14049 0.14243886407780337 IRLGRSSKLDE 11 Unmodified _IRLGRSSKLDE_ 0 0 0 REV__ENST00000326685.11_1_5:148521193-148521631:+|nuORF REV__ENST00000326685.11_1_5:148521193-148521631:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24493408203125 3 425.245609 1272.715 NaN NaN NaN NaN NaN NaN NaN 86.769 1 86.769 86.269 87.269 0 0 0 0 0.22632 1 16933 16933 1.4551 0 1 + 21455 20584 14045 14050 21277 21277 0.08954947374854783 IRLIAVVIFV 10 Unmodified _IRLIAVVIFV_ 0 0 0 REV__ENSG00000172289|ENST00000307552|OR10V1 REV__ENSG00000172289|ENST00000307552|OR10V1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 571.886474609375 2 571.886627 1141.7587 NaN NaN NaN NaN NaN NaN NaN 10.557 1 9.4903 8.9903 9.9903 -1.0664 0 0 0 0.22588 1 1148 1148 0 0 1 + 21456 18279 14046 14051 21278 21278 0.19349208609901325 IRLIELVLIY 10 Unmodified _IRLIELVLIY_ 0 0 0 REV__ENST00000508717.1_1_5:14498631-14508016:+|nuORF REV__ENST00000508717.1_1_5:14498631-14508016:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7722778320312 2 622.902474 1243.7904 NaN NaN NaN NaN NaN NaN NaN 127.04 1 127.04 126.54 127.54 0 0 0 0 2.8426 1 25075 25075 0.26539 0 1 + 21457 22516 14047 14052 21279 21279 0.17825156573212553 IRLPLSPIRS 10 Unmodified _IRLPLSPIRS_ 0 0 0 REV__ENST00000378797.6_2_13:46916770-46916875:-|nuORF REV__ENST00000378797.6_2_13:46916770-46916875:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3322143554688 2 576.36659 1150.71863 NaN NaN NaN NaN NaN NaN NaN 152.52 1 147.35 146.85 147.85 -5.1759 0 0 0 0.22588 1 29562 29562 2.4985 0 1 + 21458 21125 14048 14053 21280 21280 0.14929661939368088 IRLVLVYYI 9 Unmodified _IRLVLVYYI_ 0 0 0 REV__ENST00000367287.4_1_1:201939235-201939328:+|nuORF REV__ENST00000367287.4_1_1:201939235-201939328:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3109130859375 2 576.362985 1150.71142 NaN NaN NaN NaN NaN NaN NaN 152.13 1 147.38 146.88 147.88 -4.7523 0 0 0 0.23508 1 30225 30225 5.2307 1.2863 1 + 21459 20915 14049 14054 21281 21281 0.14208929338951748 IRNWQRWHRIF 11 Unmodified _IRNWQRWHRIF_ 0 0 0 REV__CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant REV__CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 538.1875610351562 3 537.963771 1610.86948 NaN NaN NaN NaN NaN NaN NaN 164.55 1 164.55 164.05 165.05 0 0 0 0 0.22632 1 33286 33286 0.026206 0 1 + 21460 13238 14050 14055 21282 21282 0.08848241370719734 IRPDYSVL 8 Unmodified _IRPDYSVL_ 0 0 0 REV__ENSG00000109738|ENST00000264428|GLRB REV__ENSG00000109738|ENST00000264428|GLRB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77001953125 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 164.16 1 159.37 158.87 159.87 -4.7898 0 0 0 0.2074 1 32783 32783 19.439 5.9311 1 + 21461 15173 14051 14056 21283 21283 0.04098071414523474 IRPIEESDQ 9 Unmodified _IRPIEESDQ_ 0 0 0 ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;nc|ENSG00000132912|Q9UJW0-2|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7808837890625 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 163.79 1 159 158.5 159.5 -4.7898 0 0 0 0.23508 1 32676 32676 10.824 1.4408 1 21462 3770 14052 14057 21284 21284 -0.004043566329528403 IRPIEESDQ 9 Unmodified _IRPIEESDQ_ 0 0 0 ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;nc|ENSG00000132912|Q9UJW0-2|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7732543945312 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 163.82 1 159.03 158.53 159.53 -4.7898 0 0 0 0.23508 1 32686 32686 10.824 1.4765 1 21463 3770 14052 14057 21285 21285 -0.004043566329528403 IRPLKVRLVN 10 Unmodified _IRPLKVRLVN_ 0 0 0 REV__ENST00000380455.8_2_6:3026990-3027080:+|nuORF REV__ENST00000380455.8_2_6:3026990-3027080:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 604.4058227539062 2 604.403507 1206.79246 NaN NaN NaN NaN NaN NaN NaN 176.91 1 172.12 171.62 172.62 -4.7898 0 0 0 2.8426 1 36183 36183 0.26539 0.2216 1 + 21464 21154 14053 14058 21286 21286 0.19733630101700328 IRQHQSFY 8 Unmodified _IRQHQSFY_ 0 0 0 REV__ENSG00000185869|ENST00000391711|ZNF829 REV__ENSG00000185869|ENST00000391711|ZNF829 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2008972167969 3 360.185802 1077.53558 NaN NaN NaN NaN NaN NaN NaN 43.456 1 40.69 40.19 41.19 -2.7661 0 0 0 0.21486 1 7848 7848 5.7319 0 1 + 21465 18993 14054 14059 21287 21287 -8.892122423276305E-05 IRQHQSFY 8 Unmodified _IRQHQSFY_ 0 0 0 REV__ENSG00000185869|ENST00000391711|ZNF829 REV__ENSG00000185869|ENST00000391711|ZNF829 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2008056640625 3 360.185802 1077.53558 NaN NaN NaN NaN NaN NaN NaN 43.444 1 40.696 40.196 41.196 -2.7475 0 0 0 0.21486 1 7842 7842 5.7319 2.1448 1 + 21466 18993 14054 14059 21288 21288 -8.892122423276305E-05 IRQLFVFR 8 Unmodified _IRQLFVFR_ 0 0 0 REV__tr|U7SS36|U7SS36_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01528PE=4SV=1 REV__tr|U7SS36|U7SS36_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01528PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2232360839844 3 360.222188 1077.64473 NaN NaN NaN NaN NaN NaN NaN 34.447 1 34.447 33.947 34.947 0 0 0 0 0.23664 1 6303 6303 3.2813 0.78282 1 + 21467 25045 14055 14060 21289 21289 0.109017385676907 IRQWKLKHK 9 Unmodified _IRQWKLKHK_ 0 0 0 nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128;CEP128|p.I749Ffs*9|1|0.42|ENSG00000100629|chr14:80778013-80778013|T/-|frameshift_variant nc|ENSG00000100629|Q6ZU80-1|CEP128 nc|ENSG00000100629|Q6ZU80-1|CEP128 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 412.9463195800781 3 412.927775 1235.7615 NaN NaN NaN NaN NaN NaN NaN 9.434 1 9.434 8.934 9.934 0 0 0 0 0.23508 1 1089 1089 0.26902 0 1 21468 1999 14056 14061 21290 21290 0.1530447678744622 IRQYIEYYFFK 11 Unmodified _IRQYIEYYFFK_ 0 0 0 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4094848632812 2 785.408652 1568.80275 NaN NaN NaN NaN NaN NaN NaN 110.26 1 110.26 109.76 110.76 0 0 0 0 0.23698 1 21684 21684 2.4985 1.169 1 21469 26075 14057 14062 21291 21291 0.04110148245581513 IRQYIEYYFFK 11 Unmodified _IRQYIEYYFFK_ 0 0 0 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4109497070312 2 785.408652 1568.80275 NaN NaN NaN NaN NaN NaN NaN 99.278 1 95.145 94.645 95.645 -4.1326 0 0 0 0.23698 1 19501 19501 2.7352 1.4057 1 21470 26075 14057 14062 21292 21292 0.04110148245581513 IRQYIEYYFFK 11 Unmodified _IRQYIEYYFFK_ 0 0 0 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4114990234375 2 785.408652 1568.80275 NaN NaN NaN NaN NaN NaN NaN 97.912 1 93.643 93.143 94.143 -4.2692 0 0 0 0.2367 1 18708 18708 2.9952 1.5133 1 21471 26075 14057 14062 21293 21293 0.04110148245581513 IRQYIEYYFFK 11 Unmodified _IRQYIEYYFFK_ 0 0 0 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4091186523438 2 785.408652 1568.80275 NaN NaN NaN NaN NaN NaN NaN 98.521 1 94.251 93.751 94.751 -4.2692 0 0 0 0.2367 1 18833 18833 2.9952 1.6657 1 21472 26075 14057 14062 21294 21294 0.04110148245581513 IRQYIEYYFFK 11 Unmodified _IRQYIEYYFFK_ 0 0 0 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3816528320312 2 785.408652 1568.80275 NaN NaN NaN NaN NaN NaN NaN 100.97 1 96.676 96.176 97.176 -4.297 0 0 0 0.2367 1 19319 19319 2.9952 1.6657 1 21473 26075 14057 14062 21295 21295 0.04110148245581513 IRQYIEYYFFK 11 Unmodified _IRQYIEYYFFK_ 0 0 0 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4109497070312 2 785.408652 1568.80275 NaN NaN NaN NaN NaN NaN NaN 98.202 1 94.246 93.746 94.746 -3.9564 0 0 0 0.2367 1 18847 18847 2.9952 1.6657 1 21474 26075 14057 14062 21296 21296 0.04110148245581513 IRRFKQEWLKK 11 Unmodified _IRRFKQEWLKK_ 0 0 0 ENSG00000019485|ENST00000683152|PRDM11 ENSG00000019485|ENST00000683152|PRDM11 ENSG00000019485|ENST00000683152|PRDM11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 511.3101806640625 3 511.312177 1530.9147 NaN NaN NaN NaN NaN NaN NaN 167.35 1 162.4 161.9 162.9 -4.948 0 0 0 0.22632 1 32912 32912 1.4551 0 1 21475 1121 14058 14063 21297 21297 0.17048047113235043 IRRFSRRRRFD 11 Unmodified _IRRFSRRRRFD_ 0 0 0 REV__ENST00000513635.1_1_5:40681836-40685490:+|nuORF REV__ENST00000513635.1_1_5:40681836-40685490:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.270751953125 3 522.306308 1563.89709 NaN NaN NaN NaN NaN NaN NaN 63.452 1 60.036 59.536 60.536 -3.4158 0 0 0 0.22632 1 11853 11853 0 0 1 + 21476 22570 14059 14064 21298 21298 0.13770144630962022 IRRIGLFNNR 10 Unmodified _IRRIGLFNNR_ 0 0 0 ENSG00000111713|ENST00000261195|GYS2 ENSG00000111713|ENST00000261195|GYS2 ENSG00000111713|ENST00000261195|GYS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 419.8221740722656 3 420.254551 1257.74182 -0.059505 -2.5007E-05 0.61029 0.00025648 0.55078 0.00023147 420.5891380685355 12.845 0.1407 12.845 12.753 12.894 0 6 3 2 0 0 0 1.1347 1 1808 1808 0.13989 0.04505 1 1013900 21477 2639 14060 14065 21299 21299 0.12326100776704152 IRRIGLFNNR 10 Unmodified _IRRIGLFNNR_ 0 0 0 ENSG00000111713|ENST00000261195|GYS2 ENSG00000111713|ENST00000261195|GYS2 ENSG00000111713|ENST00000261195|GYS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 420.254551 1257.74182 -0.81541 -0.00034268 1.3814 0.00058052 0.56594 0.00023784 420.25531520622104 13.651 0.24949 12.641 12.518 12.768 -1.0098 -0.010915 0.00047718 NaN 0.13989 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 510330 21478 2639 14060 14065 0.12326100776704152 IRRIGLFNNR 10 Unmodified _IRRIGLFNNR_ 0 0 0 ENSG00000111713|ENST00000261195|GYS2 ENSG00000111713|ENST00000261195|GYS2 ENSG00000111713|ENST00000261195|GYS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 420.254551 1257.74182 -0.70121 -0.00029468 1.2209 0.00051309 0.51969 0.0002184 420.25511310779103 13.642 0.13812 12.469 12.381 12.519 -1.173 -0.18246 0.00027489 NaN 0.13989 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 388850 21479 2639 14060 14065 0.12326100776704152 IRRLGAQFRK 10 Unmodified _IRRLGAQFRK_ 0 0 0 ENST00000499023.6_1_4:155471502-155471580:-|nuORF ENST00000499023.6_1_4:155471502-155471580:-|nuORF ENST00000499023.6_1_4:155471502-155471580:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7655639648438 2 622.888555 1243.76256 NaN NaN NaN NaN NaN NaN NaN 79.537 1 75.861 75.361 76.361 -3.676 0 0 0 2.8426 1 15153 15153 1.9064 0 1 21480 10611 14061 14066 21300 21300 0.15042691156349974 IRRLRKRVR 9 Unmodified _IRRLRKRVR_ 0 0 0 ENST00000564682.5_1_16:28565295-28592384:+|nuORF ENST00000564682.5_1_16:28565295-28592384:+|nuORF ENST00000564682.5_1_16:28565295-28592384:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 418.2911376953125 3 418.289818 1251.84762 NaN NaN NaN NaN NaN NaN NaN 52.034 1 48.983 48.483 49.483 -3.0517 0 0 0 0.23508 1 9597 9597 0.96228 0.26461 1 21481 11346 14062 14067 21301 21301 0.23177481412812995 IRSGVHSCAH 10 Unmodified _IRSGVHSCAH_ 0 0 0 nc|ENSG00000189050|Q5M7Z0-2|RNFT1;ENST00000477207.2_1_17:58039882-58042045:-|nuORF;ENST00000586083.5_1_17:58037427-58042045:-|nuORF;nc|ENSG00000189050|Q5M7Z0-3|RNFT1;ENSG00000189050|ENST00000305783|RNFT1 nc|ENSG00000189050|Q5M7Z0-2|RNFT1 nc|ENSG00000189050|Q5M7Z0-2|RNFT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.0780944824219 3 356.178542 1065.5138 0.24572 8.7522E-05 -0.98397 -0.00035047 -0.73825 -0.00026295 356.17815124435293 93.053 0.6221 88.909 88.623 89.245 -4.1435 27 17 2 0 0 0 0.91149 1 17725 17725 1.9064 0 1 1866900 21482 7213 14063 14068 21302 21302 -0.016340201426601197 IRVGPPVAP 9 Unmodified _IRVGPPVAP_ 0 0 0 REV__POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant REV__POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7535705566406 2 453.281995 904.549437 0.51822 0.0002349 -0.36237 -0.00016425 0.15585 7.0644E-05 453.2817822208342 105.36 2.3716 105.36 104.34 106.72 0 127 67 2 0 0 0 0.5464 1 20932 20932 0.40827 0 1 4919000 + 21483 14130 14064 14069 21303 21303 0.0933438537664415 IRVHTGAKPY 10 Unmodified _IRVHTGAKPY_ 0 0 0 ZBTB5|p.E638A|1|0.22|ENSG00000168795|chr9:37440639-37440639|T/G|missense_variant ZBTB5|p.E638A|1|0.22|ENSG00000168795|chr9:37440639-37440639|T/G|missense_variant ZBTB5|p.E638A|1|0.22|ENSG00000168795|chr9:37440639-37440639|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21881103515625 3 381.220735 1140.64038 NaN NaN NaN NaN NaN NaN NaN 55.977 1 52.8 52.3 53.3 -3.1761 0 0 0 0.22588 1 10405 10405 11.518 0 1 21484 26593 14065 14070 21304 21304 0.07568229354114919 IRVIARVRPV 10 Unmodified _IRVIARVRPV_ 0 0 0 nc|ENSG00000140859|Q9BVG8-4|KIFC3;nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3 nc|ENSG00000140859|Q9BVG8-4|KIFC3 nc|ENSG00000140859|Q9BVG8-4|KIFC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.266357421875 2 589.895849 1177.77715 NaN NaN NaN NaN NaN NaN NaN 114.88 1 110.41 109.91 110.91 -4.4726 0 0 0 0.22588 1 22640 22640 1.6526 0.32309 1 21485 4331 14066 14071 21305 21305 0.19536763304495253 IRVLFLTVNF 10 Unmodified _IRVLFLTVNF_ 0 0 0 REV__ENST00000328046.8_1_X:24005008-24005134:-|nuORF REV__ENST00000328046.8_1_X:24005008-24005134:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 408.2590637207031 3 407.916653 1220.72813 NaN NaN NaN NaN NaN NaN NaN 27.443 1 25.687 25.187 26.187 -1.7552 0 0 0 2.8426 1 4594 4594 3.8763 0 1 + 21486 20595 14067 14072 21306 21306 0.12659430224880452 IRVLRPRNK 9 Unmodified _IRVLRPRNK_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.321533203125 2 576.377823 1150.74109 NaN NaN NaN NaN NaN NaN NaN 174.29 1 174.29 173.79 174.79 0 0 0 0 0.1963 1 36075 36075 0.40827 0 1 21487 3477 14068 14073 21307 21307 0.1717530612761493 IRVRFYEGPEL 11 Unmodified _IRVRFYEGPEL_ 0 0 0 nc|ENSG00000105664|P49747-2|COMP;CON__ENSEMBL:ENSBTAP00000006074;ENSG00000105664|ENST00000222271|COMP nc|ENSG00000105664|P49747-2|COMP nc|ENSG00000105664|P49747-2|COMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23016357421875 3 460.254105 1377.74048 0.11872 5.464E-05 0.0010651 4.902E-07 0.11978 5.513E-05 460.25403946918817 157.06 0.7646 151.77 151.41 152.18 -5.2854 33 21 2 0 0 0 0.79196 1 30537 30537 4.7159 1.3963 1 978110 + 21488 637 14069 14074 21308 21308 0.06672421897292224 IRVRFYEGPEL 11 Unmodified _IRVRFYEGPEL_ 0 0 0 nc|ENSG00000105664|P49747-2|COMP;CON__ENSEMBL:ENSBTAP00000006074;ENSG00000105664|ENST00000222271|COMP nc|ENSG00000105664|P49747-2|COMP nc|ENSG00000105664|P49747-2|COMP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 460.254105 1377.74048 0.067297 3.0974E-05 -0.26553 -0.00012221 -0.19823 -9.1236E-05 460.58853069365637 156.64 0.64175 151.85 151.49 152.13 -4.7885 0.053932 -0.0002511 NaN 4.7159 30 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1129800 + 21489 637 14069 14074 0.06672421897292224 IRVRFYEGPEL 11 Unmodified _IRVRFYEGPEL_ 0 0 0 nc|ENSG00000105664|P49747-2|COMP;CON__ENSEMBL:ENSBTAP00000006074;ENSG00000105664|ENST00000222271|COMP nc|ENSG00000105664|P49747-2|COMP nc|ENSG00000105664|P49747-2|COMP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 460.254105 1377.74048 0.11872 5.464E-05 0.0010651 4.902E-07 0.11978 5.513E-05 460.25403946918817 157.06 0.7646 151.77 151.41 152.18 -5.2854 -0.024611 0.000117 NaN 4.7159 33 21 2 NaN NaN NaN NaN 0 NaN NaN 0 978110 + 21490 637 14069 14074 0.06672421897292224 IRVRFYEGPEL 11 Unmodified _IRVRFYEGPEL_ 0 0 0 nc|ENSG00000105664|P49747-2|COMP;CON__ENSEMBL:ENSBTAP00000006074;ENSG00000105664|ENST00000222271|COMP nc|ENSG00000105664|P49747-2|COMP nc|ENSG00000105664|P49747-2|COMP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 460.254105 1377.74048 0.41135 0.00018933 -0.059024 -2.7166E-05 0.35233 0.00016216 460.58830732224743 157.04 0.66705 151.77 151.41 152.08 -5.2712 -0.029321 3.4032E-05 NaN 4.7159 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1529800 + 21491 637 14069 14074 0.06672421897292224 IRVVQQCQL 9 Unmodified _IRVVQQCQL_ 0 0 0 REV__ENSG00000158109|ENST00000378344|TPRG1L REV__ENSG00000158109|ENST00000378344|TPRG1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.788818359375 2 543.808051 1085.60155 0.22123 0.00012031 0.98304 0.00053458 1.2043 0.00065489 543.8085587086148 115.19 0.96236 110.64 110.08 111.04 -4.555 40 26 2 0 0 0 0.48644 1 22093 22093 20.454 1.1966 1 2107300 + 21492 17324 14070 14075 21309 21309 0.06217180728117455 IRVVQQCQL 9 Unmodified _IRVVQQCQL_ 0 0 0 REV__ENSG00000158109|ENST00000378344|TPRG1L REV__ENSG00000158109|ENST00000378344|TPRG1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7811889648438 2 543.808051 1085.60155 0.61358 0.00033367 0.61867 0.00033644 1.2322 0.00067011 543.8081457646488 114.97 0.8457 110.66 110.13 110.98 -4.3135 46 23 3 0 0 0 0.48644 1 22142 22142 20.454 1.1966 1 2517800 + 21493 17324 14070 14075 21310 21310 0.06217180728117455 IRVYIFCRARW 11 Unmodified _IRVYIFCRARW_ 0 0 0 ENST00000598377.2_2_19:53716896-53717031:+|nuORF ENST00000598377.2_2_19:53716896-53717031:+|nuORF ENST00000598377.2_2_19:53716896-53717031:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3812866210938 2 741.911173 1481.80779 NaN NaN NaN NaN NaN NaN NaN 171.53 1 171.53 171.03 172.03 0 0 0 0 0.22632 1 35343 35343 0.026206 0 1 21494 11686 14071 14076 21311 21311 0.08616173627206081 IRWSLNKLYNW 11 Unmodified _IRWSLNKLYNW_ 0 0 0 REV__nc|ENSG00000214787|Q96PG1-2|MS4A4E REV__nc|ENSG00000214787|Q96PG1-2|MS4A4E MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 498.2716369628906 3 498.273499 1491.79867 NaN NaN NaN NaN NaN NaN NaN 166.93 1 161.98 161.48 162.48 -4.948 0 0 0 0.22632 1 32782 32782 3.0723 3.0409 1 + 21495 24268 14072 14077 21312 21312 0.07244103542575431 IRYRMYCQ 8 Unmodified _IRYRMYCQ_ 0 0 0 ENST00000567123.1_3_15:75075012-75091204:+|nuORF ENST00000567123.1_3_15:75075012-75091204:+|nuORF ENST00000567123.1_3_15:75075012-75091204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 378.18365478515625 3 378.184528 1131.53175 NaN NaN NaN NaN NaN NaN NaN 13.865 1 12.655 12.155 13.155 -1.2106 0 0 0 0.2396 1 1792 1792 0.30703 0.30703 1 21496 11377 14073 14078 21313 21313 -0.0287502121216221 ISACGVPC 8 Unmodified _ISACGVPC_ 0 0 0 SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1;ENST00000467821.1_1_9:113205816-113312285:-|nuORF;nc|ENSG00000165124|Q4LDE5-4|SVEP1 SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21820068359375 2 375.169667 748.324781 NaN NaN NaN NaN NaN NaN NaN 53.687 1 50.6 50.1 51.1 -3.0876 0 0 0 0.23749 1 9885 9885 0.12286 0 1 21497 5600 14074 14079 21314 21314 -0.059448087603414024 ISAHSSLSK 9 Unmodified _ISAHSSLSK_ 0 0 0 nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant nc|ENSG00000005810|O75592-2|MYCBP2 nc|ENSG00000005810|O75592-2|MYCBP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2571716308594 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 73.779 1 70.102 69.602 70.602 -3.6764 0 0 0 0.23508 1 13946 13946 10.824 1.4765 1 21498 996 14075 14080 21315 21315 0.030685968921034146 ISAIFKKIKD 10 Unmodified _ISAIFKKIKD_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 581.7380981445312 2 581.863349 1161.71214 0.32053 0.0001865 2.6038 0.0015151 2.9243 0.0017016 582.3651312772394 147.81 0.17447 147.81 147.68 147.85 0 5 4 2 0 0 0 0.90091 1 29544 29544 3.2813 0 1 1854700 + 21499 14106;24761 14076 14081 21316 21316 0.13775723987987476 ISALILTIIRF 11 Unmodified _ISALILTIIRF_ 0 0 0 REV__tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1 REV__tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7783203125 2 630.407924 1258.80129 0.40312 0.00025413 -1.1216 -0.00070704 -0.71844 -0.00045291 630.9098009426614 136.48 0.13551 136.48 136.41 136.55 0 5 3 2 0 0 0 0.96118 1 27045 27045 2.7352 0 1 4755500 + 21500 25250 14077 14082 21317 21317 0.18224558947486003 ISAVRDRYLPA 11 Unmodified _ISAVRDRYLPA_ 0 0 0 ENST00000508448.5_1_4:41937256-41937487:+|nuORF;ENST00000504986.5_1_4:41937256-41937487:+|nuORF ENST00000508448.5_1_4:41937256-41937487:+|nuORF ENST00000508448.5_1_4:41937256-41937487:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7763061523438 2 630.856586 1259.69862 NaN NaN NaN NaN NaN NaN NaN 143.77 1 143.77 143.27 144.27 0 0 0 0 0.2018 1 28698 28698 18.373 2.224 1 21501 10663 14078 14083 21318 21318 0.07915866208759326 ISCHLFLF 8 Unmodified _ISCHLFLF_ 0 0 0 REV__tr|U7SSV8|U7SSV8_FUSNUDUF3307domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01391PE=4SV=1 REV__tr|U7SSV8|U7SSV8_FUSNUDUF3307domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01391PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2583923339844 2 490.257131 978.499709 NaN NaN NaN NaN NaN NaN NaN 148.33 1 143.62 143.12 144.12 -4.7095 0 0 0 0.093888 1 29450 29450 45.75 2.782 1 + 21502 25071 14079 14084 21319 21319 0.00959934376351157 ISDCLPASR 9 Unmodified _ISDCLPASR_ 0 0 0 ENST00000590986.5_2_18:33709186-33709321:-|nuORF ENST00000590986.5_2_18:33709186-33709321:-|nuORF ENST00000590986.5_2_18:33709186-33709321:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2420349121094 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 139.62 1 139.62 139.12 140.12 0 0 0 0 0.23508 1 27760 27760 10.074 0.72649 1 21503 11608 14080 14085 21320 21320 -0.011950493596373235 ISDDLNKVY 9 Unmodified _ISDDLNKVY_ 0 0 0 REV__nc|ENSG00000101104|Q4VXU2-2|PABPC1L REV__nc|ENSG00000101104|Q4VXU2-2|PABPC1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.274169921875 2 533.774396 1065.53424 0.67312 0.00035929 -0.65715 -0.00035077 0.015974 8.5263E-06 533.7738715834661 111.08 0.38464 106.85 106.55 106.94 -4.2289 17 10 2 0 0 0 0.74655 1 21340 21340 3.5965 0 1 2713300 + 21504 14761 14081 14086 21321 21321 0.004094289981367183 ISDFVGPPP 9 Unmodified _ISDFVGPPP_ 0 0 0 nc|ENSG00000186765|O14926-2|FSCN2 nc|ENSG00000186765|O14926-2|FSCN2 nc|ENSG00000186765|O14926-2|FSCN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 52.439 1 49.556 49.056 50.056 -2.883 0 0 0 0.23508 1 9977 9977 2.9952 0 1 21505 12522 14082 14087 21322 21322 0.003546936318684857 ISDFVGPPP 9 Unmodified _ISDFVGPPP_ 0 0 0 nc|ENSG00000186765|O14926-2|FSCN2 nc|ENSG00000186765|O14926-2|FSCN2 nc|ENSG00000186765|O14926-2|FSCN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 72.058 1 68.52 68.02 69.02 -3.5385 0 0 0 0.19692 1 13667 13667 0.40827 0 1 21506 12522 14082 14087 21323 21323 0.003546936318684857 ISDGLLIVNT 10 Unmodified _ISDGLLIVNT_ 0 0 0 REV__ENST00000469698.5_1_17:39981777-39991902:-|nuORF REV__ENST00000469698.5_1_17:39981777-39991902:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2670288085938 2 522.800414 1043.58628 -0.61849 -0.00032335 0.29357 0.00015348 -0.32492 -0.00016987 522.8005973381394 106.24 0.65666 101.86 101.51 102.17 -4.3764 22 18 2 0 0 0 0.54036 1 20408 20408 13.042 0 1 1346700 + 21507 16648 14083 14088 21324 21324 0.06622592411895312 ISDHIPHP 8 Unmodified _ISDHIPHP_ 0 0 0 GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2384033203125 2 458.237784 914.461016 0.048904 2.241E-05 0.79436 0.000364 0.84326 0.00038641 458.2381246318011 56.968 0.63252 56.968 56.675 57.307 0 27 17 2 0 0 0 0.73426 1 10939 10939 9.3474 9.3474 1 1882200 21508 11864 14084 14089 21325 21325 0.00036345066178000707 ISDHYGQKF 9 Unmodified _ISDHYGQKF_ 0 0 0 SLC46A3|p.R100Q|1|0.36|ENSG00000139508|chr13:28713441-28713441|C/T|missense_variant SLC46A3|p.R100Q|1|0.36|ENSG00000139508|chr13:28713441-28713441|C/T|missense_variant SLC46A3|p.R100Q|1|0.36|ENSG00000139508|chr13:28713441-28713441|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7678833007812 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 130.2 1 125.42 124.92 125.92 -4.7725 0 0 0 0.22621 1 25052 25052 15.847 1.2655 1 21509 25687 14085 14090 21326 21326 -0.023760180791896346 ISDLDDMYD 9 Unmodified _ISDLDDMYD_ 0 0 0 REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1 REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78271484375 2 543.71843 1085.42231 NaN NaN NaN NaN NaN NaN NaN 135.43 1 130.6 130.1 131.1 -4.8307 0 0 0 0.19652 1 26073 26073 0.029283 0 1 + 21510 24983 14086 14091 21327 21327 -0.11698793141135866 ISDLIRDSY 9 Unmodified _ISDLIRDSY_ 0 0 0 nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2798461914062 2 541.279846 1080.54514 0.18348 9.9314E-05 -0.040985 -2.2184E-05 0.14249 7.7129E-05 541.2797769013686 89.133 0.7784 89.133 88.682 89.461 0 84 21 5 0 0 0 1.6908E-24 3 17418 17320;17370;17418 181.69 71.016 1 124100000 21511 7600 14087 14092 21328;21329;21330 21330 0.008088313724329055 ISDLIRDSY 9 Unmodified _ISDLIRDSY_ 0 0 0 nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2798461914062 2 541.279846 1080.54514 0.2041 0.00011048 -0.25289 -0.00013689 -0.048789 -2.6408E-05 541.279704180669 93.109 0.9001 89.118 88.587 89.487 -3.9907 103 25 5 0 0 0 5.5802000000000005E-24 5 18207 18158;18162;18207;18246;18286 176.43 65.752 1 148830000 21512 7600 14087 14092 21331;21332;21333;21334;21335 21333 0.008088313724329055 ISDLIRDSY 9 Unmodified _ISDLIRDSY_ 0 0 0 nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2798461914062 2 541.279846 1080.54514 0.29707 0.0001608 -0.27927 -0.00015116 0.017805 9.6375E-06 541.2796690282955 93.34 0.92844 89.196 88.589 89.517 -4.1435 103 26 5 0 0 0 6.7375E-71 3 17762 17715;17762;17806 218.2 107.52 1 138860000 21513 7600 14087 14092 21336;21337;21338 21337 0.008088313724329055 ISDLIRDSY 9 Unmodified _ISDLIRDSY_ 0 0 0 nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2799072265625 2 541.279846 1080.54514 0.15924 8.6192E-05 -0.14332 -7.7577E-05 0.015916 8.6153E-06 541.2797971293606 93.02 0.885 89.176 88.65 89.535 -3.844 104 25 5 0 0 0 1.2164E-44 5 17796 17733;17752;17796;17838;17880 203.64 81.46 1 155060000 21514 7600 14087 14092 21339;21340;21341;21342;21343 21341 0.008088313724329055 ISDLIRDSY 9 Unmodified _ISDLIRDSY_ 0 0 0 nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.268798828125 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 94.415 1 90.571 90.071 91.071 -3.844 0 0 0 0.13259 1 18113 18113 32.786 3.7041 1 21515 7600 14087 14092 21344 21344 0.008088313724329055 ISDLIRDSY 9 Unmodified _ISDLIRDSY_ 0 0 0 nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 nc|ENSG00000204634|O95759-2|TBC1D8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2799682617188 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 94.669 1 90.788 90.288 91.288 -3.881 0 0 0 0.1599 1 18164 18164 29.082 1.4528 1 21516 7600 14087 14092 21345 21345 0.008088313724329055 ISDLMDEGEG 10 Unmodified _ISDLMDEGEG_ 0 0 0 nc|ENSG00000184481|P98177-2|FOXO4;ENSG00000184481|ENST00000374259|FOXO4 nc|ENSG00000184481|P98177-2|FOXO4 nc|ENSG00000184481|P98177-2|FOXO4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2694702148438 2 533.223879 1064.43321 NaN NaN NaN NaN NaN NaN NaN 65.149 1 62.102 61.602 62.602 -3.047 0 0 0 0.22544 1 12603 12603 19.257 0 1 21517 6912 14088 14093 21346 21346 -0.09643390766882476 ISDLTTIPS 9 Unmodified _ISDLTTIPS_ 0 0 0 REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1752014160156 3 316.174569 945.501877 NaN NaN NaN NaN NaN NaN NaN 77.353 1 73.586 73.086 74.086 -3.7664 0 0 0 0.23508 1 14655 14655 4.897 1.3005 1 + 21518 19033 14089 14094 21347 21347 0.026946415951556446 ISDLYDTDVY 10 Unmodified _ISDLYDTDVY_ 0 0 0 REV__ENSG00000163145|ENST00000444304|C1QTNF7 REV__ENSG00000163145|ENST00000444304|C1QTNF7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2727661132812 2 602.274426 1202.5343 NaN NaN NaN NaN NaN NaN NaN 111.19 1 106.77 106.27 107.27 -4.4231 0 0 0 0.22588 1 21906 21906 6.7232 0.51738 1 + 21519 17552 14090 14095 21348 21348 -0.058866157925194784 ISDRDPQCNL 10 Unmodified _ISDRDPQCNL_ 0 0 0 nc|ENSG00000198732|Q9H4F8|SMOC1;ENSG00000198732|ENST00000361956|SMOC1 nc|ENSG00000198732|Q9H4F8|SMOC1 nc|ENSG00000198732|Q9H4F8|SMOC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.1873779296875 3 387.517 1159.52917 -0.68586 -0.00026578 1.2172 0.00047167 0.5313 0.00020589 387.51749066212443 54.062 1.4107 50.924 49.544 50.954 -3.1377 67 40 2 0 0 0 0.91149 1 9908 9908 0.12286 0 1 1602200 21520 7481 14091 14096 21349 21349 -0.044211981361286234 ISDSHSDSD 9 Unmodified _ISDSHSDSD_ 0 0 0 LENG8|p.R434I|1|0.09|ENSG00000167615|chr19:54456242-54456242|G/T|missense_variant LENG8|p.R434I|1|0.09|ENSG00000167615|chr19:54456242-54456242|G/T|missense_variant LENG8|p.R434I|1|0.09|ENSG00000167615|chr19:54456242-54456242|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2356872558594 2 481.688518 961.362483 NaN NaN NaN NaN NaN NaN NaN 118.38 1 118.38 117.88 118.88 0 0 0 0 0.21065 1 23315 23315 20.454 13.164 1 21521 12073 14092 14097 21350 21350 -0.11974347760167348 ISDTVISQV 9 Unmodified _ISDTVISQV_ 0 0 0 ENST00000556219.1_1_14:74345825-74346017:+|nuORF ENST00000556219.1_1_14:74345825-74346017:+|nuORF ENST00000556219.1_1_14:74345825-74346017:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76519775390625 2 481.263665 960.512776 -0.082619 -3.9761E-05 0.21511 0.00010353 0.13249 6.3765E-05 481.26367077639276 87.263 0.66069 87.263 86.946 87.607 0 31 18 2 0 0 0 0.081765 2 17051 17051;17092 61.357 9.0891 1 3147000 21522 11237 14093 14098 21351;21352 21351 0.03094043969440463 ISDTVISQV 9 Unmodified _ISDTVISQV_ 0 0 0 ENST00000556219.1_1_14:74345825-74346017:+|nuORF ENST00000556219.1_1_14:74345825-74346017:+|nuORF ENST00000556219.1_1_14:74345825-74346017:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7658996582031 2 481.263665 960.512776 -0.0090808 -4.3702E-06 0.070022 3.3699E-05 0.060941 2.9329E-05 481.2635604250816 91.113 0.68057 87.253 86.929 87.61 -3.8595 40 19 3 0 0 0 0.041554 3 17806 17794;17805;17806 74.929 13.662 1 3245800 21523 11237 14093 14098 21353;21354;21355 21355 0.03094043969440463 ISDTVISQV 9 Unmodified _ISDTVISQV_ 0 0 0 ENST00000556219.1_1_14:74345825-74346017:+|nuORF ENST00000556219.1_1_14:74345825-74346017:+|nuORF ENST00000556219.1_1_14:74345825-74346017:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7652893066406 2 481.263665 960.512776 0.34155 0.00016438 -0.44537 -0.00021434 -0.10382 -4.9963E-05 481.2634918978129 91.41 0.64782 87.316 86.985 87.633 -4.0946 39 18 3 0 0 0 0.081765 2 17426 17388;17426 61.357 6.5839 1 2758300 21524 11237 14093 14098 21356;21357 21357 0.03094043969440463 ISDTVISQV 9 Unmodified _ISDTVISQV_ 0 0 0 ENST00000556219.1_1_14:74345825-74346017:+|nuORF ENST00000556219.1_1_14:74345825-74346017:+|nuORF ENST00000556219.1_1_14:74345825-74346017:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2549743652344 2 481.263665 960.512776 0.072237 3.4765E-05 -0.084747 -4.0786E-05 -0.01251 -6.0204E-06 481.26350847832384 91.127 0.82681 87.319 86.892 87.719 -3.8083 38 23 2 0 0 0 0.081765 2 17435 17428;17435 61.357 13.012 1 2524800 21525 11237 14093 14098 21358;21359 21359 0.03094043969440463 ISDTVNLSA 9 Unmodified _ISDTVNLSA_ 0 0 0 tr|U7SVC6|U7SVC6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01212PE=3SV=1 tr|U7SVC6|U7SVC6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01212PE=3SV=1 tr|U7SVC6|U7SVC6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01212PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23028564453125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 41.943 1 39.224 38.724 39.724 -2.7191 0 0 0 0.23508 1 7837 7837 13.042 0 1 21526 26234 14094 14099 21360 21360 0.0033318441827532297 ISDVKGGV 8 Unmodified _ISDVKGGV_ 0 0 0 REV__ENST00000507657.1_1_3:141106267-141106384:+|nuORF REV__ENST00000507657.1_1_3:141106267-141106384:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7213134765625 2 387.721436 773.428318 -0.42911 -0.00016638 0.57334 0.0002223 0.14423 5.5921E-05 387.72155409995565 67.776 0.59303 67.776 67.514 68.107 0 27 16 2 0 0 0 8448 1 13144 13144 6.1918 4.5 1 2117700 + 21527 22503 14095 14100 21361 21361 0.03254137943349633 ISDVTIQW 8 Unmodified _ISDVTIQW_ 0 0 0 REV__ENSG00000256713|ENST00000312403|PGA5 REV__ENSG00000256713|ENST00000312403|PGA5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2544860839844 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 91.481 1 87.387 86.887 87.887 -4.0946 0 0 0 0.17894 1 17428 17428 32.117 3.6301 1 + 21528 19739 14096 14101 21362 21362 0.00982078660570096 ISEDKNPDY 9 Unmodified _ISEDKNPDY_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.266357421875 2 540.745836 1079.47712 0.33041 0.00017867 -0.47911 -0.00025907 -0.1487 -8.0409E-05 540.7455464510306 24.247 1.014 24.247 23.899 24.913 0 86 29 6 0 0 0 0.73481 1 4260 4260 24.991 2.3329 1 77005000 21529 6310 14097 14102 21363 21363 -0.05944038278221342 ISEDKNPDY 9 Unmodified _ISEDKNPDY_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2809448242188 2 540.745836 1079.47712 0.19368 0.00010473 -0.26328 -0.00014237 -0.069601 -3.7637E-05 540.7456502919115 25.906 1.148 24.271 23.995 25.143 -1.6347 103 32 6 0 0 0 0.48307 1 4353 4353 33.445 9.6551 1 106850000 21530 6310 14097 14102 21364 21364 -0.05944038278221342 ISEGTHSTE 9 Unmodified _ISEGTHSTE_ 0 0 0 ENSG00000166797|ENST00000300030|CIAO2A ENSG00000166797|ENST00000300030|CIAO2A ENSG00000166797|ENST00000300030|CIAO2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2407531738281 2 480.717079 959.419604 0.15766 7.5791E-05 -1.554 -0.00074702 -1.3963 -0.00067123 480.71624172095676 134.45 0.66592 129.63 129.2 129.86 -4.8175 30 18 2 0 0 0 0.55979 1 25910 25910 15.847 3.3156 1 1718700 21531 5746 14098 14103 21365 21365 -0.061728804838139695 ISEHGEDEM 9 Unmodified _ISEHGEDEM_ 0 0 0 ENST00000464256.1_1_21:34132086-34144033:-|nuORF;nc|ENSG00000159086|Q9Y5B6-3|PAXBP1;nc|ENSG00000159086|Q9Y5B6-4|PAXBP1;PAXBP1|p.E759Dfs*7|1|0.05|ENSG00000159086|chr21:32743305-32743306|-/CCATAGGCTTAGA|frameshift_variant;nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;PAXBP1|p.K834Qfs*32|2|0.12|ENSG00000159086|chr21:32737390-32737391|-/G|frameshift_variant;ENSG00000159086|ENST00000331923|PAXBP1 ENST00000464256.1_1_21:34132086-34144033:-|nuORF ENST00000464256.1_1_21:34132086-34144033:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6895141601562 2 523.708396 1045.40224 NaN NaN NaN NaN NaN NaN NaN 121.97 1 117.42 116.92 117.92 -4.5476 0 0 0 0.19679 1 24040 24040 0.37959 0 1 21532 5188 14099 14104 21366 21366 -0.11864544081117856 ISEIITLNY 9 Unmodified _ISEIITLNY_ 0 0 0 REV__TLR6|p.N423Tfs*8|1|0.09|ENSG00000174130|chr4:38828206-38828206|T/-|frameshift_variant REV__TLR6|p.N423Tfs*8|1|0.09|ENSG00000174130|chr4:38828206-38828206|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2609252929688 2 533.294965 1064.57538 NaN NaN NaN NaN NaN NaN NaN 146.12 1 146.12 145.62 146.62 0 0 0 0 0.22251 1 29211 29211 16.942 0 1 + 21533 18394 14100 14105 21367 21367 0.04567190037596447 ISEKFEGIR 9 Unmodified _ISEKFEGIR_ 0 0 0 REV__ENST00000469302.1_1_13:113140309-113144032:-|nuORF REV__ENST00000469302.1_1_13:113140309-113144032:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2008361816406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 62.949 1 59.534 59.034 60.034 -3.4158 0 0 0 0.23108 1 11756 11756 14.405 2.1647 1 + 21534 15850 14101 14106 21368 21368 0.046171279889904326 ISEKRKDLY 9 Unmodified _ISEKRKDLY_ 0 0 0 REV__tr|U7T144|U7T144_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00890PE=3SV=1 REV__tr|U7T144|U7T144_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00890PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3247680664062 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 91.919 1 88.111 87.611 88.611 -3.8083 0 0 0 0.22621 1 17604 17604 15.847 3.3156 1 + 21535 25289 14102 14107 21369 21369 0.06533086051808823 ISEKRKDLY 9 Unmodified _ISEKRKDLY_ 0 0 0 REV__tr|U7T144|U7T144_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00890PE=3SV=1 REV__tr|U7T144|U7T144_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00890PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3113403320312 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 93.351 1 89.507 89.007 90.007 -3.844 0 0 0 0.23508 1 17896 17896 7.2892 0.93513 1 + 21536 25289 14102 14107 21370 21370 0.06533086051808823 ISEKRKDLY 9 Unmodified _ISEKRKDLY_ 0 0 0 REV__tr|U7T144|U7T144_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00890PE=3SV=1 REV__tr|U7T144|U7T144_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00890PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3115844726562 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 141.97 1 137.1 136.6 137.6 -4.8678 0 0 0 0.23508 1 27392 27392 7.9102 1.7044 1 + 21537 25289 14102 14107 21371 21371 0.06533086051808823 ISELHQPGY 9 Unmodified _ISELHQPGY_ 0 0 0 REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.260986328125 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 142.88 1 137.86 137.36 138.36 -5.0261 0 0 0 0.23508 1 27547 27547 11.64 2.2929 1 + 21538 13013 14103 14108 21372 21372 -0.011194204534604069 ISELPPIDVV 10 Unmodified _ISELPPIDVV_ 0 0 0 NAPEPLD|p.A180V|1|0.12|ENSG00000161048|chr7:103119979-103119979|G/A|missense_variant NAPEPLD|p.A180V|1|0.12|ENSG00000161048|chr7:103119979-103119979|G/A|missense_variant NAPEPLD|p.A180V|1|0.12|ENSG00000161048|chr7:103119979-103119979|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2708129882812 2 541.310615 1080.60668 0.33719 0.00018252 -1.1909 -0.00064463 -0.85369 -0.00046211 541.3091269691556 152.87 0.20862 148.1 148.02 148.22 -4.7684 7 5 2 0 0 0 0.54036 1 30380 30380 24.021 5.8742 1 904950 21539 12198 14104 14109 21373 21373 0.06959763071699854 ISELRSNFE 9 Unmodified _ISELRSNFE_ 0 0 0 REV__ENSG00000070729|ENST00000251102|CNGB1 REV__ENSG00000070729|ENST00000251102|CNGB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.781005859375 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 124.1 1 124.1 123.6 124.6 0 0 0 0 0.13613 1 24465 24465 32.305 0 1 + 21540 14263 14105 14110 21374 21374 -0.0026405277030789875 ISENFDRTL 9 Unmodified _ISENFDRTL_ 0 0 0 tr|U7SRM7|U7SRM7_FUSNURqc2homologRqcHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rqcHPE=3SV=1 tr|U7SRM7|U7SRM7_FUSNURqc2homologRqcHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rqcHPE=3SV=1 tr|U7SRM7|U7SRM7_FUSNURqc2homologRqcHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rqcHPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7752075195312 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 144.95 1 140.01 139.51 140.51 -4.9445 0 0 0 0.23508 1 28013 28013 12.532 0 1 21541 26082 14106 14111 21375 21375 -0.0026405277033063612 ISENKFLKY 9 Unmodified _ISENKFLKY_ 0 0 0 MTPAP|p.L388Sfs*12|1|0.41|ENSG00000107951|chr10:30322449-30322449|A/-|frameshift_variant;MTPAP|p.G449Wfs*7|1|0.49|ENSG00000107951|chr10:30316004-30316005|-/A|frameshift_variant;ENSG00000107951|ENST00000263063|MTPAP;nc|ENSG00000107951|Q9NVV4-2|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF MTPAP|p.L388Sfs*12|1|0.41|ENSG00000107951|chr10:30322449-30322449|A/-|frameshift_variant MTPAP|p.L388Sfs*12|1|0.41|ENSG00000107951|chr10:30322449-30322449|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2129821777344 3 381.213246 1140.61791 -0.0095666 -3.6469E-06 0.037711 1.4376E-05 0.028144 1.0729E-05 381.21322881113093 78.305 0.70351 74.538 74.283 74.987 -3.7664 49 19 3 0 0 0 0.12505 1 14816 14816 37.075 3.6297 1 9104200 21542 2450 14107 14112 21376 21376 0.053225851658453394 ISENKFLKY 9 Unmodified _ISENKFLKY_ 0 0 0 MTPAP|p.L388Sfs*12|1|0.41|ENSG00000107951|chr10:30322449-30322449|A/-|frameshift_variant;MTPAP|p.G449Wfs*7|1|0.49|ENSG00000107951|chr10:30316004-30316005|-/A|frameshift_variant;ENSG00000107951|ENST00000263063|MTPAP;nc|ENSG00000107951|Q9NVV4-2|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF MTPAP|p.L388Sfs*12|1|0.41|ENSG00000107951|chr10:30322449-30322449|A/-|frameshift_variant MTPAP|p.L388Sfs*12|1|0.41|ENSG00000107951|chr10:30322449-30322449|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 381.213246 1140.61791 -0.21952 -8.3685E-05 0.21231 8.0936E-05 -0.007209 -2.7482E-06 381.2132648667679 78.043 0.71249 74.579 74.217 74.929 -3.4633 0.019316 -4.3259E-05 NaN 37.075 59 19 4 NaN NaN NaN NaN 0 NaN NaN 0 10570000 21543 2450 14107 14112 0.053225851658453394 ISENSLSEES 10 Unmodified _ISENSLSEES_ 0 0 0 tr|U7SU20|U7SU20_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01280PE=4SV=1 tr|U7SU20|U7SU20_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01280PE=4SV=1 tr|U7SU20|U7SU20_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01280PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7818603515625 2 547.746033 1093.47751 0.58546 0.00032068 1.0025 0.00054912 1.588 0.0008698 547.7463015796079 115.54 0.52583 111.23 110.98 111.5 -4.3136 25 14 2 0 0 0 0.39316 1 22243 22243 31.268 3.6395 1 1974800 21544 26182 14108 14113 21377 21377 -0.06548663349030903 ISENSLSEES 10 Unmodified _ISENSLSEES_ 0 0 0 tr|U7SU20|U7SU20_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01280PE=4SV=1 tr|U7SU20|U7SU20_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01280PE=4SV=1 tr|U7SU20|U7SU20_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01280PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 547.746033 1093.47751 0.34698 0.00019006 0.15861 8.688E-05 0.50559 0.00027694 547.7461119420207 111.08 0.41698 111.08 110.86 111.27 0 -0.074008 -0.00081214 NaN 31.268 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1029500 21545 26182 14108 14113 -0.06548663349030903 ISEQEKVP 8 Unmodified _ISEQEKVP_ 0 0 0 REV__ENST00000460863.1_1_2:114500256-114501404:-|nuORF REV__ENST00000460863.1_1_2:114500256-114501404:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2491760253906 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 112.12 1 107.59 107.09 108.09 -4.5259 0 0 0 0.21323 1 21523 21523 14.582 0 1 + 21546 15401 14109 14114 21378 21378 0.01945774797957256 ISERSPDL 8 Unmodified _ISERSPDL_ 0 0 0 REV__nc|ENSG00000291104|Q96KV6|BTN2A3P REV__nc|ENSG00000291104|Q96KV6|BTN2A3P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2447204589844 2 458.740357 915.46616 0.14762 6.7718E-05 0.19993 9.1716E-05 0.34755 0.00015943 458.74035806124994 76.691 0.81287 73.057 72.646 73.459 -3.6337 70 22 4 0 0 0 0.64512 1 14637 14637 19.257 0 1 17989000 + 21547 24326 14110 14115 21379 21379 0.005046041381433497 ISERVQIQL 9 Unmodified _ISERVQIQL_ 0 0 0 REV__GOLGB1|p.E1375Vfs*20|1|0.02|ENSG00000173230|chr3:121696386-121696387|-/AACTTAGTGAGAAAGAAGCAGCTCTCACT|frameshift_variant REV__GOLGB1|p.E1375Vfs*20|1|0.02|ENSG00000173230|chr3:121696386-121696387|-/AACTTAGTGAGAAAGAAGCAGCTCTCACT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7818603515625 2 543.319306 1084.62406 0.28502 0.00015486 -0.19597 -0.00010648 0.08905 4.8382E-05 543.3188804783332 143.33 0.56075 138.68 138.37 138.93 -4.656 31 15 3 0 0 0 0.066439 1 28290 28290 18.614 0 1 5738300 + 21548 18343 14111 14116 21380 21380 0.08513103397376653 ISETVILR 8 Unmodified _ISETVILR_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2463073730469 2 465.784567 929.554582 0.34362 0.00016005 -0.1015 -4.7279E-05 0.24212 0.00011278 465.7843730096683 106.44 0.59212 106.44 106.09 106.68 0 23 16 2 0 0 0 0.96284 1 20961 20961 19.439 0 1 853880 21549 2877 14112 14117 21381 21381 0.08698644448611503 ISEVERTFGN 10 Unmodified _ISEVERTFGN_ 0 0 0 ENSG00000273079|ENST00000609686|GRIN2B ENSG00000273079|ENST00000609686|GRIN2B ENSG00000273079|ENST00000609686|GRIN2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3251953125 2 576.288202 1150.56185 -0.086041 -4.9585E-05 0.049725 2.8656E-05 -0.036316 -2.0929E-05 576.2883788990326 46.942 0.76757 44.011 43.546 44.313 -2.9312 53 21 4 0 0 0 0.13997 1 8572 8572 3.104 0.47275 1 10480000 21550 8008 14113 14118 21382 21382 -0.007406677416156526 ISEVGAITLY 10 Unmodified _ISEVGAITLY_ 0 0 0 REV__ENSG00000139182|ENST00000266546|CLSTN3 REV__ENSG00000139182|ENST00000266546|CLSTN3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2684326171875 2 533.294965 1064.57538 NaN NaN NaN NaN NaN NaN NaN 144.35 1 144.35 143.85 144.85 0 0 0 0 0.22576 1 28838 28838 14.838 1.3304 1 + 21551 16506 14114 14119 21383 21383 0.04567190037619184 ISEVHWYL 8 Unmodified _ISEVHWYL_ 0 0 0 MPHOSPH6|p.E42V|1|0.33|ENSG00000135698|chr16:82164121-82164121|T/A|missense_variant MPHOSPH6|p.E42V|1|0.33|ENSG00000135698|chr16:82164121-82164121|T/A|missense_variant MPHOSPH6|p.E42V|1|0.33|ENSG00000135698|chr16:82164121-82164121|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6959838867188 2 523.768917 1045.52328 NaN NaN NaN NaN NaN NaN NaN 130.76 1 125.93 125.43 126.43 -4.8355 0 0 0 0.21486 1 25106 25106 9.3474 0.75416 1 21552 12159 14115 14120 21384 21384 0.0023407141450206836 ISFIFIKL 8 Unmodified _ISFIFIKL_ 0 0 0 REV__ENST00000460072.5_1_2:39984490-39995716:-|nuORF REV__ENST00000460072.5_1_2:39984490-39995716:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2738037109375 2 490.812596 979.61064 0.60528 0.00029708 -0.16649 -8.1716E-05 0.43879 0.00021536 490.81243971646035 101.11 0.70508 101.11 100.73 101.43 0 42 19 3 0 0 0 1.0249 1 19874 19874 2.5775 1.8871 1 4830000 + 21553 21872 14116 14121 21385 21385 0.12001897356060454 ISFLPYIVL 9 Unmodified _ISFLPYIVL_ 0 0 0 nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;ENST00000484268.1_1_7:48352666-48443694:+|nuORF nc|ENSG00000179869|Q86UQ4-4|ABCA13 nc|ENSG00000179869|Q86UQ4-4|ABCA13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2781982421875 2 532.823161 1063.63177 0.09864 5.2558E-05 -3.4549 -0.0018408 -3.3562 -0.0017883 532.8214426648802 156.46 0.61469 156.46 156.21 156.83 0 25 17 2 0 0 0 0.44856 1 31451 31451 1.2148 0 1 2587500 21554 9 14117 14122 21386 21386 0.10249862664909415 ISFLSVNWE 9 Unmodified _ISFLSVNWE_ 0 0 0 REV__ENSG00000169908|ENST00000305366|TM4SF1 REV__ENSG00000169908|ENST00000305366|TM4SF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7786254882812 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 130.71 1 125.87 125.37 126.37 -4.8355 0 0 0 0.18489 1 25095 25095 2.8827 0 1 + 21555 18128 14118 14123 21387 21387 0.0013803672336507589 ISFLYVLILA 10 Unmodified _ISFLYVLILA_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2;REV__ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3320922851562 2 576.357368 1150.70018 NaN NaN NaN NaN NaN NaN NaN 142.65 1 142.65 142.15 143.15 0 0 0 0 2.8426 1 28444 28444 0.69767 0 1 + 21556 17048;14623;15716 14119 14124 21388 21388 0.13086107244816958 ISFLYVLILA 10 Unmodified _ISFLYVLILA_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2;REV__ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33154296875 2 576.357368 1150.70018 NaN NaN NaN NaN NaN NaN NaN 144.65 1 139.59 139.09 140.09 -5.0671 0 0 0 0.22588 1 27916 27916 6.7232 0 1 + 21557 17048;14623;15716 14119 14124 21389 21389 0.13086107244816958 ISFTPKEVG 9 Unmodified _ISFTPKEVG_ 0 0 0 FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.271728515625 2 489.26875 976.522947 0.27292 0.00013353 -0.10128 -4.9551E-05 0.17165 8.3981E-05 489.26864486926365 115.09 1.2996 110.78 110.31 111.61 -4.3136 124 36 5 0 0 0 0.5059 1 22229 22229 19.257 2.3147 1 87505000 21558 3531 14120 14125 21390 21390 0.03374651694673503 ISFYESLMRY 10 Unmodified _ISFYESLMRY_ 0 0 0 ENST00000505330.5_1_3:130721373-130721514:+|nuORF ENST00000505330.5_1_3:130721373-130721514:+|nuORF ENST00000505330.5_1_3:130721373-130721514:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23602294921875 3 436.88128 1307.62201 NaN NaN NaN NaN NaN NaN NaN 89.133 1 85.089 84.589 85.589 -4.0443 0 0 0 0.22588 1 16983 16983 3.3196 0.68841 1 21559 10673 14121 14126 21391 21391 -0.019496934027529278 ISGAEKLAE 9 Unmodified _ISGAEKLAE_ 0 0 0 REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF;REV__DLG1|p.N376Lfs*12|1|0.2|ENSG00000075711|chr3:197130665-197130666|-/TGCTTAA|frameshift_variant;REV__nc|ENSG00000132535|P78352-3|DLG4;REV__ENST00000477312.1_1_3:196863310-196867015:-|nuORF REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2394104003906 2 459.250557 916.486562 -0.12568 -5.7719E-05 0.59802 0.00027464 0.47233 0.00021692 459.2506326741557 91.726 0.68776 87.801 87.509 88.197 -3.9251 38 19 3 0 0 0 0.48644 1 17984 17984 20.454 3.5113 1 1561300 + 21560 22734;13690;16122;22118 14122 14127 21392 21392 0.024977747979505693 ISGDGNGKLN 10 Unmodified _ISGDGNGKLN_ 0 0 0 ENST00000606893.5_1_6:110533295-110551331:+|nuORF;ENSG00000168438|ENST00000307731|CDC40 ENST00000606893.5_1_6:110533295-110551331:+|nuORF ENST00000606893.5_1_6:110533295-110551331:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 487.2574157714844 2 487.748713 973.482873 1.0258 0.00050036 -0.789 -0.00038483 0.23685 0.00011552 487.7481423164571 27.644 0.55781 25.861 25.596 26.153 -1.7821 29 15 3 0 0 0 0.79872 1 4902 4902 13.906 0 1 2195800 21561 5908 14123 14128 21393 21393 -0.004928949759005263 ISGDGNGKLN 10 Unmodified _ISGDGNGKLN_ 0 0 0 ENST00000606893.5_1_6:110533295-110551331:+|nuORF;ENSG00000168438|ENST00000307731|CDC40 ENST00000606893.5_1_6:110533295-110551331:+|nuORF ENST00000606893.5_1_6:110533295-110551331:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 487.748713 973.482873 0.22801 0.00011121 0.27338 0.00013334 0.50139 0.00024455 487.74872913480726 25.977 0.51923 25.977 25.705 26.224 0 0.11716 0.00048113 NaN 13.906 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2512400 21562 5908 14123 14128 -0.004928949759005263 ISGDGNGKLN 10 Unmodified _ISGDGNGKLN_ 0 0 0 ENST00000606893.5_1_6:110533295-110551331:+|nuORF;ENSG00000168438|ENST00000307731|CDC40 ENST00000606893.5_1_6:110533295-110551331:+|nuORF ENST00000606893.5_1_6:110533295-110551331:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 487.748713 973.482873 0.36206 0.0001766 -0.12563 -6.1277E-05 0.23643 0.00011532 487.7485725222046 27.644 0.52393 25.889 25.548 26.072 -1.7552 0.028767 9.1893E-05 NaN 13.906 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2214900 21563 5908 14123 14128 -0.004928949759005263 ISGDGNGKLN 10 Unmodified _ISGDGNGKLN_ 0 0 0 ENST00000606893.5_1_6:110533295-110551331:+|nuORF;ENSG00000168438|ENST00000307731|CDC40 ENST00000606893.5_1_6:110533295-110551331:+|nuORF ENST00000606893.5_1_6:110533295-110551331:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 487.748713 973.482873 -0.03304 -1.6115E-05 -0.19362 -9.4438E-05 -0.22666 -0.00011055 487.7485243004428 27.709 0.56276 25.713 25.432 25.995 -1.9962 -0.14705 2.5573E-05 NaN 13.906 26 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1612000 21564 5908 14123 14128 -0.004928949759005263 ISGDPMQYGAY 11 Unmodified _ISGDPMQYGAY_ 0 0 0 REV__ENSG00000007171|ENST00000313735|NOS2 REV__ENSG00000007171|ENST00000313735|NOS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.275390625 2 601.263339 1200.51212 0.32452 0.00019512 2.6616 0.0016003 2.9862 0.0017955 601.2678106582975 44.757 0.24997 41.991 41.905 42.155 -2.7661 12 6 3 0 0 0 0.66829 1 8121 8121 13.906 0.86358 1 944640 + 21565 13883 14124 14129 21394 21394 -0.0801111874191065 ISGDVSPVST 10 Unmodified _ISGDVSPVST_ 0 0 0 ENSG00000111321|ENST00000228918|LTBR;nc|ENSG00000111321|P36941-2|LTBR ENSG00000111321|ENST00000228918|LTBR ENSG00000111321|ENST00000228918|LTBR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2344970703125 2 481.245472 960.476391 0.33107 0.00015933 -0.67529 -0.00032498 -0.34421 -0.00016565 481.24511053279184 67.672 0.45659 64.176 63.89 64.346 -3.4965 14 12 2 0 0 0 0.51199 1 12705 12705 24.021 0 1 1053500 21566 2616 14125 14130 21395 21395 -0.005428329272717747 ISGGRKGFTY 10 Unmodified _ISGGRKGFTY_ 0 0 0 nc|ENSG00000172869|Q9Y485|DMXL1;DMXL1|p.N3021Mfs*3|1|0.28|ENSG00000172869|chr5:119247193-119247193|A/-|frameshift_variant;ENSG00000172869|ENST00000539542|DMXL1 nc|ENSG00000172869|Q9Y485|DMXL1 nc|ENSG00000172869|Q9Y485|DMXL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7916870117188 2 543.290548 1084.56654 0.24794 0.0001347 -0.90492 -0.00049164 -0.65698 -0.00035693 543.7930988819329 85.718 0.14191 81.768 81.663 81.805 -3.9503 5 3 2 0 0 0 0.71097 1 16311 16311 10.074 1.4806 1 376740 21567 857 14126 14131 21396 21396 0.027642611918281546 ISGHEEPDY 9 Unmodified _ISGHEEPDY_ 0 0 0 REV__EPB41L2|p.D357N|1|0.31|ENSG00000079819|chr6:130901041-130901041|C/T|missense_variant REV__EPB41L2|p.D357N|1|0.31|ENSG00000079819|chr6:130901041-130901041|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6908569335938 2 523.724904 1045.43525 NaN NaN NaN NaN NaN NaN NaN 56.327 1 56.327 55.827 56.827 0 0 0 0 0.23508 1 10755 10755 7.9102 0.62092 1 + 21568 14402 14127 14132 21397 21397 -0.08564593966752909 ISGHEEPDY 9 Unmodified _ISGHEEPDY_ 0 0 0 REV__EPB41L2|p.D357N|1|0.31|ENSG00000079819|chr6:130901041-130901041|C/T|missense_variant REV__EPB41L2|p.D357N|1|0.31|ENSG00000079819|chr6:130901041-130901041|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6842041015625 2 523.724904 1045.43525 NaN NaN NaN NaN NaN NaN NaN 82.714 1 79.106 78.606 79.606 -3.6079 0 0 0 0.23508 1 16164 16164 11.64 1.5664 1 + 21569 14402 14127 14132 21398 21398 -0.08564593966752909 ISGHEEPDY 9 Unmodified _ISGHEEPDY_ 0 0 0 REV__EPB41L2|p.D357N|1|0.31|ENSG00000079819|chr6:130901041-130901041|C/T|missense_variant REV__EPB41L2|p.D357N|1|0.31|ENSG00000079819|chr6:130901041-130901041|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6771240234375 2 523.724904 1045.43525 NaN NaN NaN NaN NaN NaN NaN 62.945 1 59.688 59.188 60.188 -3.2567 0 0 0 0.23508 1 11807 11807 12.532 3.9383 1 + 21570 14402 14127 14132 21399 21399 -0.08564593966752909 ISGHEEPDY 9 Unmodified _ISGHEEPDY_ 0 0 0 REV__EPB41L2|p.D357N|1|0.31|ENSG00000079819|chr6:130901041-130901041|C/T|missense_variant REV__EPB41L2|p.D357N|1|0.31|ENSG00000079819|chr6:130901041-130901041|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.686767578125 2 523.724904 1045.43525 NaN NaN NaN NaN NaN NaN NaN 80.201 1 76.525 76.025 77.025 -3.676 0 0 0 0.23508 1 15288 15288 12.532 2.4576 1 + 21571 14402 14127 14132 21400 21400 -0.08564593966752909 ISGIPIYHVMD 11 Unmodified _ISGIPIYHVMD_ 0 0 0 BCKDHA|p.R80H|1|0.47|ENSG00000248098|chr19:41410767-41410767|G/A|missense_variant BCKDHA|p.R80H|1|0.47|ENSG00000248098|chr19:41410767-41410767|G/A|missense_variant BCKDHA|p.R80H|1|0.47|ENSG00000248098|chr19:41410767-41410767|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7752685546875 2 622.820824 1243.62709 NaN NaN NaN NaN NaN NaN NaN 149.66 1 149.66 149.16 150.16 0 0 0 0 0.22943 1 29963 29963 8.7454 0 1 21572 306 14128 14133 21401 21401 0.015026104598518941 ISGLGYCFSF 10 Unmodified _ISGLGYCFSF_ 0 0 0 SLC16A6|p.F392Lfs*8|1|0.23|ENSG00000108932|chr17:68270984-68270984|A/-|frameshift_variant;ENSG00000108932|ENST00000580666|SLC16A6 SLC16A6|p.F392Lfs*8|1|0.23|ENSG00000108932|chr17:68270984-68270984|A/-|frameshift_variant SLC16A6|p.F392Lfs*8|1|0.23|ENSG00000108932|chr17:68270984-68270984|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7907104492188 2 547.254785 1092.49502 0.33399 0.00018278 1.6326 0.00089347 1.9666 0.0010762 547.2542664513825 147.88 0.16803 147.88 147.79 147.95 0 6 4 2 0 0 0 0.871 1 29600 29600 10.074 7.7712 1 3421500 21573 2504 14129 14134 21402 21402 -0.04752994557088641 ISGLIYEETR 10 Unmodified _ISGLIYEETR_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2540893554688 2 590.814053 1179.61355 0.28063 0.0001658 0.17923 0.00010589 0.45986 0.00027169 590.813996706675 86.952 0.48579 86.952 86.666 87.152 0 22 13 2 0 0 0 0.80304 1 16922 16922 16.566 7.0219 1 1774000 21574 5162 14130 14135 21403 21403 0.03093075952278923 ISGLLANRN 9 Unmodified _ISGLLANRN_ 0 0 0 ENSG00000256683|ENST00000243644|ZNF350 ENSG00000256683|ENST00000243644|ZNF350 ENSG00000256683|ENST00000243644|ZNF350 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7345275878906 2 479.277441 956.540328 0.21165 0.00010144 -0.12662 -6.0684E-05 0.085032 4.0754E-05 479.2773174884779 136.24 2.1177 131.41 130.7 132.82 -4.8307 86 59 2 0 0 0 0.23667 1 26154 26154 42.095 13.608 1 2658500 21575 7938 14131 14136 21404 21404 0.06031992020314192 ISGMNHMYE 9 Unmodified _ISGMNHMYE_ 0 0 0 nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2 nc|ENSG00000163535|Q562F6-2|SGO2 nc|ENSG00000163535|Q562F6-2|SGO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2733154296875 2 541.225702 1080.43685 0.65716 0.00035567 -0.49155 -0.00026604 0.16561 8.9632E-05 541.7271218223544 121.25 0.2391 116.57 116.42 116.66 -4.6873 9 6 2 0 0 0 0.85913 1 23275 23275 6.2058 0 1 1083100 21576 5438 14132 14137 21405 21405 -0.10014999473992248 ISGMWKLA 8 Unmodified _ISGMWKLA_ 0 0 0 REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|256|2|anti-sense REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|256|2|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7515563964844 2 453.249306 904.484059 0.17148 7.7724E-05 0.3745 0.00016974 0.54598 0.00024746 453.2494722375063 31.666 0.56277 29.436 29.094 29.657 -2.2305 22 15 2 0 0 0 0.98676 1 5786 5786 15.847 2.3393 1 2967700 + 21577 23614 14133 14138 21406 21406 0.027996478592967833 ISGQRVQF 8 Unmodified _ISGQRVQF_ 0 0 0 REV__nc|ENSG00000132716|Q5TAQ9-2|DCAF8 REV__nc|ENSG00000132716|Q5TAQ9-2|DCAF8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 467.7573547363281 2 467.758884 933.503215 NaN NaN NaN NaN NaN NaN NaN 145.85 1 140.73 140.23 141.23 -5.1108 0 0 0 0.2074 1 28197 28197 19.439 4.8573 1 + 21578 24041 14134 14139 21407 21407 0.03380320474570908 ISGQSQALI 9 Unmodified _ISGQSQALI_ 0 0 0 REV__nc|ENSG00000161647|Q13368-2|MPP3 REV__nc|ENSG00000161647|Q13368-2|MPP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2393798828125 2 458.758549 915.502546 0.24746 0.00011352 3.4922 0.0016021 3.7396 0.0017156 458.76035144341716 124.51 0.35025 124.51 124.3 124.65 0 11 9 2 0 0 0 0.49001 1 24528 24528 15.847 0 1 895090 + 21579 17462 14135 14140 21408 21408 0.04141481034866956 ISGRPCSVP 9 Unmodified _ISGRPCSVP_ 0 0 0 REV__ENSG00000135749|ENST00000258229|PCNX2 REV__ENSG00000135749|ENST00000258229|PCNX2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2393798828125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 124.4 1 124.4 123.9 124.9 0 0 0 0 0.22251 1 24528 24528 16.942 0 1 + 21580 16287 14136 14141 21409 21409 0.003732718485366604 ISGRWLLLL 9 Unmodified _ISGRWLLLL_ 0 0 0 REV__ENSG00000039987|ENST00000553030|BEST2 REV__ENSG00000039987|ENST00000553030|BEST2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5626525878906 3 357.56221 1069.6648 NaN NaN NaN NaN NaN NaN NaN 32.938 1 30.791 30.291 31.291 -2.1468 0 0 0 0.23508 1 5730 5730 6.6304 0.84694 1 + 21581 14045 14137 14142 21410 21410 0.1327548950766868 ISGRWLLLL 9 Unmodified _ISGRWLLLL_ 0 0 0 REV__ENSG00000039987|ENST00000553030|BEST2 REV__ENSG00000039987|ENST00000553030|BEST2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.56072998046875 3 357.56221 1069.6648 NaN NaN NaN NaN NaN NaN NaN 82.894 1 79.021 78.521 79.521 -3.8736 0 0 0 0.19657 1 15743 15743 0.029283 0.021006 1 + 21582 14045 14137 14142 21411 21411 0.1327548950766868 ISGRWLLLL 9 Unmodified _ISGRWLLLL_ 0 0 0 REV__ENSG00000039987|ENST00000553030|BEST2 REV__ENSG00000039987|ENST00000553030|BEST2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5585632324219 3 357.56221 1069.6648 NaN NaN NaN NaN NaN NaN NaN 27.273 1 25.351 24.851 25.851 -1.9222 0 0 0 0.1736 1 4552 4552 27.223 4.5652 1 + 21583 14045 14137 14142 21412 21412 0.1327548950766868 ISGRWLLLL 9 Unmodified _ISGRWLLLL_ 0 0 0 REV__ENSG00000039987|ENST00000553030|BEST2 REV__ENSG00000039987|ENST00000553030|BEST2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5625915527344 3 357.56221 1069.6648 NaN NaN NaN NaN NaN NaN NaN 27.499 1 25.577 25.077 26.077 -1.9222 0 0 0 0.1736 1 4602 4602 27.223 0.95509 1 + 21584 14045 14137 14142 21413 21413 0.1327548950766868 ISGSLSLLGL 10 Unmodified _ISGSLSLLGL_ 0 0 0 REV__ENST00000375050.5_1_6:32157573-32157942:-|nuORF REV__ENST00000375050.5_1_6:32157573-32157942:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78216552734375 2 480.292225 958.569897 0.060849 2.9225E-05 -0.021879 -1.0508E-05 0.03897 1.8717E-05 480.29218411659514 139.21 1.3347 134.57 134.01 135.35 -4.6439 130 37 5 0 0 0 0.089578 1 27479 27479 64.236 1.6636 1 222490000 + 21585 21062 14138 14143 21414 21414 0.08895511245816579 ISGSLWWTH 9 Unmodified _ISGSLWWTH_ 0 0 0 ENST00000327064.8_1_19:11027427-11030292:+|nuORF ENST00000327064.8_1_19:11027427-11030292:+|nuORF ENST00000327064.8_1_19:11027427-11030292:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7695922851562 2 543.771991 1085.52943 NaN NaN NaN NaN NaN NaN NaN 24.242 1 24.242 23.742 24.742 0 0 0 0 0.23508 1 4168 4168 10.824 0.75 1 21586 8746 14139 14144 21415 21415 -0.009914103539813368 ISHAPLPHLG 10 Unmodified _ISHAPLPHLG_ 0 0 0 ENST00000573807.5_1_17:7216077-7216773:-|nuORF ENST00000573807.5_1_17:7216077-7216773:-|nuORF ENST00000573807.5_1_17:7216077-7216773:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2698364257812 2 521.295633 1040.57671 -0.21069 -0.00010983 -1.146 -0.00059742 -1.3567 -0.00070725 521.2953642223874 122.57 0.64562 117.86 117.59 118.23 -4.7159 32 18 3 0 0 0 0.70357 1 23534 23534 10.824 0.75 1 2293900 21587 11440 14140 14145 21416 21416 0.0580486891703913 ISHCLLFYTY 10 Unmodified _ISHCLLFYTY_ 0 0 0 ENSG00000197299|ENST00000355112|BLM;BLM|p.G1220Pfs*25|1|0.09|ENSG00000197299|chr15:90804264-90804265|-/ACCTTTA|frameshift_variant;BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant ENSG00000197299|ENST00000355112|BLM ENSG00000197299|ENST00000355112|BLM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7505493164062 2 630.310092 1258.60563 0.29306 0.00018472 -1.4604 -0.00092048 -1.1673 -0.00073576 630.809120849406 105.99 0.14106 101.62 101.54 101.68 -4.3764 5 3 2 0 0 0 0.71097 1 20312 20312 10.074 3.3508 1 559610 21588 7351 14141 14146 21417 21417 -0.013327745688457071 ISHDMTHHLL 10 Unmodified _ISHDMTHHLL_ 0 0 0 REV__nc|ENSG00000125775|Q9H190-3|SDCBP2 REV__nc|ENSG00000125775|Q9H190-3|SDCBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2999877929688 2 602.30059 1202.58663 NaN NaN NaN NaN NaN NaN NaN 145.49 1 140.55 140.05 141.05 -4.9445 0 0 0 0.22588 1 28132 28132 10.824 0.75 1 + 21589 15828 14142 14147 21418 21418 -0.006563111398918409 ISHLAIVKY 9 Unmodified _ISHLAIVKY_ 0 0 0 REV__ENSG00000067248|ENST00000251636|DHX29 REV__ENSG00000067248|ENST00000251636|DHX29 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.274169921875 2 522.316035 1042.61752 NaN NaN NaN NaN NaN NaN NaN 126.02 1 121.25 120.75 121.75 -4.7681 0 0 0 0.23508 1 24188 24188 7.9102 0 1 + 21590 14212 14143 14148 21419 21419 0.09791210236653569 ISHLPHDP 8 Unmodified _ISHLPHDP_ 0 0 0 REV__ENSG00000105976|ENST00000397752|MET REV__ENSG00000105976|ENST00000397752|MET MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2378234863281 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 55.543 1 52.353 51.853 52.853 -3.1895 0 0 0 0.21486 1 10270 10270 11.64 0.52583 1 + 21591 15025 14144 14149 21420 21420 0.00036345066178000707 ISHQWYQYRRQ 11 Unmodified _ISHQWYQYRRQ_ 0 0 0 DMD|p.K1883R|1|0.05|ENSG00000198947|chrX:32343225-32343225|T/C|missense_variant DMD|p.K1883R|1|0.05|ENSG00000198947|chrX:32343225-32343225|T/C|missense_variant DMD|p.K1883R|1|0.05|ENSG00000198947|chrX:32343225-32343225|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2623901367188 3 522.263774 1563.76949 NaN NaN NaN NaN NaN NaN NaN 142.46 1 137.8 137.3 138.3 -4.656 0 0 0 0.22632 1 28160 28160 0.026206 0 1 21592 852 14145 14150 21421 21421 0.01015959246251441 ISIFEELGPRV 11 Unmodified _ISIFEELGPRV_ 0 0 0 ENST00000603247.1_1_13:98128238-98128670:+|nuORF ENST00000603247.1_1_13:98128238-98128670:+|nuORF ENST00000603247.1_1_13:98128238-98128670:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7781982421875 2 630.353345 1258.69214 0.39871 0.00025133 -2.3864 -0.0015043 -1.9877 -0.001253 630.3518062005044 123.34 0.49531 123.34 123.06 123.56 0 24 13 2 0 0 0 0.72897 1 24270 24270 31.268 5.0002 1 4564200 21593 11721 14146 14151 21422 21422 0.07313928257372027 ISILFRMW 8 Unmodified _ISILFRMW_ 0 0 0 REV__ENST00000436551.1_1_2:42159370-42160581:-|nuORF REV__ENST00000436551.1_1_2:42159370-42160581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2697143554688 2 533.29933 1064.58411 NaN NaN NaN NaN NaN NaN NaN 75.125 1 71.76 71.26 72.26 -3.3643 0 0 0 0.23312 1 14658 14658 6.2058 5.9404 1 + 21594 21574 14147 14152 21423 21423 0.05439885193095506 ISILSAKKR 9 Unmodified _ISILSAKKR_ 0 0 0 REV__tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1 REV__tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.142578125 3 339.225598 1014.65496 0.33703 0.00011433 -0.70122 -0.00023787 -0.3642 -0.00012354 339.2253550706622 29.353 0.31992 27.461 27.263 27.583 -1.8928 13 8 2 0 0 0 0.81492 1 4958 4958 1.0715 0 1 306280 + 21595 24842 14148 14153 21424 21424 0.1482230150227224 ISITLAKQV 9 Unmodified _ISITLAKQV_ 0 0 0 REV__LRRK2|p.R772Q|1|0.05|ENSG00000188906|chr12:40283948-40283948|G/A|missense_variant REV__LRRK2|p.R772Q|1|0.05|ENSG00000188906|chr12:40283948-40283948|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 487.2574157714844 2 486.808042 971.601532 1.0873 0.00052932 -1.134 -0.00055206 -0.046707 -2.2737E-05 486.8075759390852 27.141 0.64065 25.358 25.202 25.842 -1.7821 23 17 2 0 0 0 0.76271 1 4902 4902 10.074 0 1 3938900 + 21596 23822 14149 14154 21425 21425 0.11459503999753906 ISITLAKQV 9 Unmodified _ISITLAKQV_ 0 0 0 REV__LRRK2|p.R772Q|1|0.05|ENSG00000188906|chr12:40283948-40283948|G/A|missense_variant REV__LRRK2|p.R772Q|1|0.05|ENSG00000188906|chr12:40283948-40283948|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 486.808042 971.601532 0.19247 9.3696E-05 -0.058903 -2.8675E-05 0.13357 6.5022E-05 486.80781216995376 25.469 0.48325 25.469 25.29 25.774 0 0.071004 0.0004121 NaN 10.074 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3716700 + 21597 23822 14149 14154 0.11459503999753906 ISITLAKQV 9 Unmodified _ISITLAKQV_ 0 0 0 REV__LRRK2|p.R772Q|1|0.05|ENSG00000188906|chr12:40283948-40283948|G/A|missense_variant REV__LRRK2|p.R772Q|1|0.05|ENSG00000188906|chr12:40283948-40283948|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 486.808042 971.601532 0.32652 0.00015895 -0.18821 -9.1624E-05 0.13831 6.7329E-05 486.80774966623346 27 0.7028 25.366 25.212 25.915 -1.6347 -0.031932 0.0002862 NaN 10.074 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 4430700 + 21598 23822 14149 14154 0.11459503999753906 ISKEKSFLDL 10 Unmodified _ISKEKSFLDL_ 0 0 0 nc|ENSG00000003402|O15519-13|CFLAR;nc|ENSG00000003402|O15519-2|CFLAR;nc|ENSG00000003402|O15519-9|CFLAR;nc|ENSG00000003402|O15519-12|CFLAR;nc|ENSG00000003402|O15519-10|CFLAR;nc|ENSG00000003402|O15519-7|CFLAR;nc|ENSG00000003402|O15519-3|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR;nc|ENSG00000003402|O15519-14|CFLAR;nc|ENSG00000003402|O15519-6|CFLAR;nc|ENSG00000003402|O15519-8|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;nc|ENSG00000003402|O15519-11|CFLAR;ENSG00000003402|ENST00000309955|CFLAR nc|ENSG00000003402|O15519-13|CFLAR nc|ENSG00000003402|O15519-13|CFLAR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2739868164062 2 590.334621 1178.65469 NaN NaN NaN NaN NaN NaN NaN 162.51 1 157.37 156.87 157.87 -5.1438 0 0 0 0.22588 1 31579 31579 8.7454 1.1365 1 21599 968 14150 14155 21426 21426 0.07250836991761389 ISKFSNLKQD 10 Unmodified _ISKFSNLKQD_ 0 0 0 tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1 tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1 tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2748413085938 2 590.322045 1178.62954 NaN NaN NaN NaN NaN NaN NaN 163.57 1 158.78 158.28 159.28 -4.7898 0 0 0 0.22566 1 32616 32616 16.149 3.9084 1 21600 25969 14151 14156 21427 21427 0.04736782189161204 ISKHQIETM 9 Unmodified _ISKHQIETM_ 0 0 0 REV__ENSG00000088205|ENST00000263239|DDX18 REV__ENSG00000088205|ENST00000263239|DDX18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7825317382812 2 543.784241 1085.55393 -0.11617 -6.3173E-05 -1.7748 -0.00096509 -1.8909 -0.0010283 543.7832938090773 108.74 0.76752 104.29 103.98 104.75 -4.4518 29 21 2 0 0 0 0.26282 1 20874 20874 0.40827 0 1 2102700 + 21601 14509 14152 14157 21428 21428 0.0145748173724769 ISKIYKEY 8 Unmodified _ISKIYKEY_ 0 0 0 REV__ENST00000233190.10_1_2:206980836-206980881:-|nuORF REV__ENST00000233190.10_1_2:206980836-206980881:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2797241210938 2 522.292225 1042.5699 0.20314 0.0001061 -2.6223 -0.0013696 -2.4191 -0.0012635 522.7917735773976 148.09 0.16653 148.09 147.99 148.15 0 5 4 2 0 0 0 0.71876 1 29645 29645 11.64 2.2929 1 1608700 + 21602 16603 14153 14158 21429 21429 0.050315112458065414 ISKIYKEY 8 Unmodified _ISKIYKEY_ 0 0 0 REV__ENST00000233190.10_1_2:206980836-206980881:-|nuORF REV__ENST00000233190.10_1_2:206980836-206980881:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 522.292225 1042.5699 0.20314 0.0001061 -2.6223 -0.0013696 -2.4191 -0.0012635 522.7917735773976 148.09 0.16653 148.09 147.99 148.15 0 0 0 NaN 11.64 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1608700 + 21603 16603 14153 14158 0.050315112458065414 ISKKFKTK 8 Unmodified _ISKKFKTK_ 0 0 0 REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1 REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2584228515625 2 490.318577 978.622602 NaN NaN NaN NaN NaN NaN NaN 145.6 1 140.93 140.43 141.43 -4.6694 0 0 0 0.23749 1 28862 28862 0.0082765 0 1 + 21604 25160 14154 14159 21430 21430 0.1324351409926976 ISKLKTKHC 9 Unmodified _ISKLKTKHC_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 353.2419128417969 3 353.211071 1056.61138 0.25249 8.9184E-05 -0.77722 -0.00027452 -0.52473 -0.00018534 353.21076445875553 30.11 0.41755 27.993 27.701 28.119 -2.1167 16 11 2 0 0 0 0.81221 1 5433 5433 1.1933 0.41681 1 511480 + 21605 17006 14155 14160 21431 21431 0.08534368733489828 ISKNFIENV 9 Unmodified _ISKNFIENV_ 0 0 0 tr|U7T6F8|U7T6F8_FUSNURepressorLexAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00219PE=4SV=1 tr|U7T6F8|U7T6F8_FUSNURepressorLexAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00219PE=4SV=1 tr|U7T6F8|U7T6F8_FUSNURepressorLexAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00219PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2787475585938 2 532.292756 1062.57096 0.26643 0.00014182 -0.21391 -0.00011386 0.052525 2.7959E-05 532.2926308246936 107.45 0.83318 107.45 107.13 107.97 0 48 23 3 0 0 0 0.5059 1 21120 21120 19.257 0 1 7938800 21606 26495 14156 14161 21432 21432 0.042177256146942455 ISKNSINHY 9 Unmodified _ISKNSINHY_ 0 0 0 tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1 tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1 tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 538.1864624023438 2 538.28018 1074.54581 0.29856 0.00016071 -0.10234 -5.5087E-05 0.19622 0.00010562 538.2800545333063 36.475 0.68974 34.127 33.757 34.447 -2.3479 57 19 4 0 0 0 0.87258 1 6402 6402 1.8442 1.3195 1 2956500 21607 26259 14157 14162 21433 21433 0.011516708121462216 ISKNSINHY 9 Unmodified _ISKNSINHY_ 0 0 0 tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1 tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1 tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 538.28018 1074.54581 0.22814 0.0001228 -0.031861 -1.715E-05 0.19628 0.00010565 538.2801114394044 34.133 0.5818 34.133 33.901 34.483 0 -0.0012995 -0.00016622 NaN 1.8442 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1737100 21608 26259 14157 14162 0.011516708121462216 ISKNSINHY 9 Unmodified _ISKNSINHY_ 0 0 0 tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1 tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1 tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 538.28018 1074.54581 -0.25847 -0.00013913 0.62068 0.0003341 0.36222 0.00019497 538.2804298588544 36.624 0.94547 34.155 33.693 34.639 -2.4688 0.021078 0.00053628 NaN 1.8442 68 26 4 NaN NaN NaN NaN 0 NaN NaN 0 2646800 21609 26259 14157 14162 0.011516708121462216 ISKNSINHY 9 Unmodified _ISKNSINHY_ 0 0 0 tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1 tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1 tr|U7SWU4|U7SWU4_FUSNUIS605OrfBfamilytransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01176PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 538.28018 1074.54581 0.34402 0.00018518 0.0075512 4.0647E-06 0.35157 0.00018924 538.2799898779533 36.459 0.88407 34.122 33.779 34.663 -2.3375 -0.012812 -0.00012379 NaN 1.8442 62 24 4 NaN NaN NaN NaN 0 NaN NaN 0 2162400 21610 26259 14157 14162 0.011516708121462216 ISKSKLGKLL 10 Unmodified _ISKSKLGKLL_ 0 0 0 REV__MMRN1|p.T664Ffs*13|1|0.08|ENSG00000138722|chr4:89935669-89935670|-/TTTGATTTAAC|frameshift_variant REV__MMRN1|p.T664Ffs*13|1|0.08|ENSG00000138722|chr4:89935669-89935670|-/TTTGATTTAAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.791748046875 2 543.865892 1085.71723 NaN NaN NaN NaN NaN NaN NaN 153.15 1 147.93 147.43 148.43 -5.2209 0 0 0 0.22588 1 29681 29681 3.2813 0.97858 1 + 21611 16483 14158 14163 21434 21434 0.17780027850631086 ISKVFVTVS 9 Unmodified _ISKVFVTVS_ 0 0 0 REV__ENST00000261439.8_1_4:38139186-38139444:+|nuORF REV__ENST00000261439.8_1_4:38139186-38139444:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2701110839844 2 490.294768 978.574983 0.15803 7.748E-05 0.064008 3.1383E-05 0.22204 0.00010886 490.29476573354884 141.34 0.7278 136.69 136.26 136.99 -4.6493 35 20 2 0 0 0 0.42842 1 27961 27961 1.2148 0 1 5114300 + 21612 20179 14159 14164 21435 21435 0.08483815108422732 ISLAARDLV 9 Unmodified _ISLAARDLV_ 0 0 0 REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7385559082031 2 479.290017 956.565481 0.072375 3.4689E-05 -0.020927 -1.003E-05 0.051448 2.4658E-05 479.28995318327986 129.63 1.0469 124.81 124.22 125.27 -4.8247 78 29 4 0 0 0 0.35202 1 24793 24793 19.362 0 1 12596000 + 21613 18135 14160 14165 21436 21436 0.08546046822880271 ISLGITESSNM 11 Unmodified _ISLGITESSNM_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3168334960938 2 576.284271 1150.55399 NaN NaN NaN NaN NaN NaN NaN 157.27 1 157.27 156.77 157.77 0 0 0 0 0.23379 1 31563 31563 5.2969 0.39987 1 21614 6711 14161 14166 21437 21437 -0.01526563053425889 ISLHGADH 8 Unmodified _ISLHGADH_ 0 0 0 REV__nc|ENSG00000274150|A8MWK0|FADS2B REV__nc|ENSG00000274150|A8MWK0|FADS2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24591064453125 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 104.46 1 100.12 99.618 100.62 -4.346 0 0 0 0.21486 1 20013 20013 4.756 1.8668 1 + 21615 24307 14162 14167 21438 21438 -0.01620514484955038 ISLHLNAVDVV 11 Unmodified _ISLHLNAVDVV_ 0 0 0 nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF;nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;NLRP2|p.N1038Tfs*4|2|0.38|ENSG00000022556|chr19:55000816-55000816|A/-|frameshift_variant;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2 nc|ENSG00000022556|Q9NX02-3|NLRP2 nc|ENSG00000022556|Q9NX02-3|NLRP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2764282226562 2 590.340238 1178.66592 NaN NaN NaN NaN NaN NaN NaN 143.68 1 143.68 143.18 144.18 0 0 0 0 0.23476 1 28678 28678 4.5289 0.58447 1 21616 1128 14163 14168 21439 21439 0.08373659085896179 ISLISDYEF 9 Unmodified _ISLISDYEF_ 0 0 0 tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1 tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1 tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7725830078125 2 543.771322 1085.52809 NaN NaN NaN NaN NaN NaN NaN 134.66 1 134.66 134.16 135.16 0 0 0 0 0.20628 1 26660 26660 21.747 1.3321 1 21617 25967 14164 14169 21440 21440 -0.011250892333919182 ISLKLWPLL 9 Unmodified _ISLKLWPLL_ 0 0 0 REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2730102539062 2 541.852253 1081.68995 0.32523 0.00017622 3.1507 0.0017072 3.476 0.0018835 541.8562093035966 146.95 0.1709 146.95 146.81 146.98 0 6 4 2 0 0 0 0.6215 1 29384 29384 0.12781 0.054551 1 1855700 + 21618 23162 14165 14170 21441 21441 0.15237544310230078 ISLLEWYIRQY 11 Unmodified _ISLLEWYIRQY_ 0 0 0 ENST00000539542.5_2_5:118510989-118513119:+|nuORF ENST00000539542.5_2_5:118510989-118513119:+|nuORF ENST00000539542.5_2_5:118510989-118513119:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.4010009765625 2 742.400827 1482.7871 NaN NaN NaN NaN NaN NaN NaN 149.33 1 144.21 143.71 144.71 -5.1204 0 0 0 0.23018 1 28932 28932 8.1555 3.6267 1 21619 11057 14166 14171 21442 21442 0.0650186172854319 ISLLKSKLAH 10 Unmodified _ISLLKSKLAH_ 0 0 0 ENST00000462559.1_1_3:183013976-183014306:+|nuORF ENST00000462559.1_1_3:183013976-183014306:+|nuORF ENST00000462559.1_1_3:183013976-183014306:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 555.2676391601562 2 555.355691 1108.69683 NaN NaN NaN NaN NaN NaN NaN 163.6 1 158.56 158.06 159.06 -5.0446 0 0 0 0.22588 1 31846 31846 6.2058 0 1 21620 10085 14167 14172 21443 21443 0.14682857190769028 ISLMQYFY 8 Unmodified _ISLMQYFY_ 0 0 0 REV__ENST00000339594.8_1_7:72891866-72891929:-|nuORF REV__ENST00000339594.8_1_7:72891866-72891929:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2619018554688 2 532.759704 1063.50485 0.098227 5.2331E-05 -1.6908 -0.0009008 -1.5926 -0.00084847 533.2599432763747 155.33 0.13742 155.33 155.21 155.35 0 5 3 2 0 0 0 0.73936 1 31143 31143 8.5933 0 1 1317800 + 21621 20698 14168 14173 21444 21444 -0.024358065516935312 ISLMQYFY 8 Unmodified _ISLMQYFY_ 0 0 0 REV__ENST00000339594.8_1_7:72891866-72891929:-|nuORF REV__ENST00000339594.8_1_7:72891866-72891929:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.759704 1063.50485 0.098227 5.2331E-05 -1.6908 -0.0009008 -1.5926 -0.00084847 533.2599432763747 155.33 0.13742 155.33 155.21 155.35 0 0 0 NaN 8.5933 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1317800 + 21622 20698 14168 14173 -0.024358065516935312 ISLRELEGQ 9 Unmodified _ISLRELEGQ_ 0 0 0 REV__SPEG|p.R1307Gfs*12|1|0.34|ENSG00000072195|chr2:219472303-219472303|C/-|frameshift_variant REV__SPEG|p.R1307Gfs*12|1|0.34|ENSG00000072195|chr2:219472303-219472303|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2817993164062 2 522.787838 1043.56112 0.27677 0.00014469 0.21984 0.00011493 0.49661 0.00025962 522.7879741891877 136.11 0.57556 131.28 130.95 131.52 -4.8307 22 15 2 0 0 0 0.77734 1 26162 26162 13.906 0 1 2113500 + 21623 14282 14169 14174 21445 21445 0.04108537609340601 ISLTKEQP 8 Unmodified _ISLTKEQP_ 0 0 0 ENSG00000165555|ENST00000380835|NOXRED1 REV__ENSG00000169967|ENST00000682094|MAP3K2 REV__ENSG00000169967|ENST00000682094|MAP3K2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2386169433594 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 66.705 1 63.379 62.879 63.879 -3.3268 0 0 0 0.20896 1 12562 12562 18.135 1.1927 1 21624 18133 14170 14175 21446 21446 0.04662365177614447 ISMEFVWLA 9 Unmodified _ISMEFVWLA_ 0 0 0 REV__ENST00000297107.10_1_5:153797146-153797353:+|nuORF REV__ENST00000297107.10_1_5:153797146-153797353:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7730102539062 2 548.280803 1094.54705 0.20883 0.0001145 1.5295 0.00083859 1.7383 0.00095309 548.2826429766685 14.059 0.24615 14.059 13.965 14.211 0 10 6 3 0 0 0 0.77732 1 2089 2089 12.532 0 1 791180 + 21625 20378 14171 14176 21447 21447 0.003561688567060628 ISMFSSGDL 9 Unmodified _ISMFSSGDL_ 0 0 0 nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7220764160156 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 106.75 1 106.75 106.25 107.25 0 0 0 0 0.22621 1 20987 20987 15.847 1.2655 1 21626 3962 14172 14177 21448 21448 -0.04741560345121343 ISMFSSGDL 9 Unmodified _ISMFSSGDL_ 0 0 0 nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7223815917969 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 136.97 1 136.97 136.47 137.47 0 0 0 0 0.23508 1 27150 27150 11.64 2.2929 1 21627 3962 14172 14177 21449 21449 -0.04741560345121343 ISMFSSGDL 9 Unmodified _ISMFSSGDL_ 0 0 0 nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7236328125 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 110.89 1 106.47 105.97 106.97 -4.4231 0 0 0 0.20628 1 21845 21845 21.747 3.6117 1 21628 3962 14172 14177 21450 21450 -0.04741560345121343 ISMLDILN 8 Unmodified _ISMLDILN_ 0 0 0 REV__ENSG00000156486|ENST00000287042|KCNS2 REV__ENSG00000156486|ENST00000287042|KCNS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2435607910156 2 459.751879 917.489204 0.025219 1.1595E-05 0.14695 6.7559E-05 0.17217 7.9153E-05 459.7518998298641 150.92 0.62665 146.19 145.89 146.51 -4.7345 24 17 2 0 0 0 0.13334 1 30005 30005 56.541 0 1 2012600 + 21629 17261 14173 14178 21451 21451 0.027159069312574502 ISMLRNVF 8 Unmodified _ISMLRNVF_ 0 0 0 ENST00000467808.5_1_X:100878383-100878811:+|nuORF ENST00000467808.5_1_X:100878383-100878811:+|nuORF ENST00000467808.5_1_X:100878383-100878811:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2751159667969 2 490.273312 978.532072 NaN NaN NaN NaN NaN NaN NaN 139.19 1 134.24 133.74 134.74 -4.952 0 0 0 0.21486 1 26774 26774 8.5933 0.68312 1 21630 10157 14174 14179 21452 21452 0.041947217793449454 ISMMYSET 8 Unmodified _ISMMYSET_ 0 0 0 tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1 tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1 tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2549133300781 2 481.203904 960.393255 NaN NaN NaN NaN NaN NaN NaN 71.402 1 67.797 67.297 68.297 -3.6047 0 0 0 0.21452 1 13464 13464 13.508 4.1604 1 21631 26291 14175 14180 21453 21453 -0.08852608971153586 ISNCSEDSC 9 Unmodified _ISNCSEDSC_ 0 0 0 nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7277526855469 2 479.16805 956.321546 0.1381 6.6173E-05 -0.33133 -0.00015876 -0.19323 -9.259E-05 479.1684751109668 50.237 0.81618 50.237 49.788 50.604 0 36 23 2 0 0 0 0.76271 1 9466 9466 10.074 7.7712 1 983840 21632 12543 14176 14181 21454 21454 -0.15836148395669625 ISNDSIFEY 9 Unmodified _ISNDSIFEY_ 0 0 0 REV__ENSG00000033170|ENST00000673929|FUT8 REV__ENSG00000033170|ENST00000673929|FUT8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7877807617188 2 544.250754 1086.48696 0.24135 0.00013136 0.26945 0.00014665 0.5108 0.000278 544.2508895590603 129.38 0.58281 124.75 124.47 125.05 -4.6292 27 16 2 0 0 0 0.69192 1 25447 25447 20.454 13.164 1 2642700 + 21633 14021 14177 14182 21455 21455 -0.052828502728289095 ISNEFKVEV 9 Unmodified _ISNEFKVEV_ 0 0 0 nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1;ENST00000477264.1_1_1:9790568-9793533:-|nuORF nc|ENSG00000171603|O94985-2|CLSTN1;ENST00000477264.1_1_1:9790568-9793533:-|nuORF nc|ENSG00000171603|O94985-2|CLSTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2866821289062 2 532.784764 1063.55498 -0.24079 -0.00012829 0.078426 4.1784E-05 -0.16236 -8.6503E-05 532.7849379059159 68.054 1.5248 68.054 67.653 69.178 0 161 42 6 0 0 0 0.057505 1 13337 13337 68.081 9.4019 1 758080000 21634 6156;10302 14178 14183 21456 21456 0.025740193777892273 ISNGIADWLY 10 Unmodified _ISNGIADWLY_ 0 0 0 DPP10|p.F223S|1|0.37|ENSG00000175497|chr2:115727907-115727907|T/C|missense_variant DPP10|p.F223S|1|0.37|ENSG00000175497|chr2:115727907-115727907|T/C|missense_variant DPP10|p.F223S|1|0.37|ENSG00000175497|chr2:115727907-115727907|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3135375976562 2 576.290214 1150.56587 NaN NaN NaN NaN NaN NaN NaN 65.551 1 62.268 61.768 62.768 -3.2832 0 0 0 0.10826 1 12325 12325 47.594 1.8948 1 21635 883 14179 14184 21457 21457 -0.0033857824791994062 ISNPNSIFR 9 Unmodified _ISNPNSIFR_ 0 0 0 REV__nc|ENSG00000087470|O00429-4|DNM1L REV__nc|ENSG00000087470|O00429-4|DNM1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6995239257812 2 524.282723 1046.55089 0.17593 9.2236E-05 1.3312 0.00069794 1.5072 0.00079018 524.2784651693402 138.56 0.13751 138.56 138.45 138.59 0 7 3 3 0 0 0 0.80521 1 27496 27496 6.7232 1.4925 1 2481300 + 21636 14504 14180 14185 21458 21458 0.02947974674748366 ISNPNSIFR 9 Unmodified _ISNPNSIFR_ 0 0 0 REV__nc|ENSG00000087470|O00429-4|DNM1L REV__nc|ENSG00000087470|O00429-4|DNM1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6871948242188 2 524.282723 1046.55089 -0.2283 -0.00011969 -0.85732 -0.00044948 -1.0856 -0.00056917 524.2823059028378 87.033 0.5985 83.306 83.009 83.608 -3.727 30 16 3 0 0 0 0.80521 1 17071 17071 6.7232 0.99131 1 3939500 + 21637 14504 14180 14185 21459 21459 0.02947974674748366 ISNPNSIFR 9 Unmodified _ISNPNSIFR_ 0 0 0 REV__nc|ENSG00000087470|O00429-4|DNM1L REV__nc|ENSG00000087470|O00429-4|DNM1L MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 524.282723 1046.55089 0.33338 0.00017479 -1.3757 -0.00072126 -1.0423 -0.00054647 524.2819003799153 83.548 0.57034 83.548 83.253 83.823 0 0.16572 -0.00024493 NaN 6.7232 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3419500 + 21638 14504 14180 14185 0.02947974674748366 ISNPNSIFR 9 Unmodified _ISNPNSIFR_ 0 0 0 REV__nc|ENSG00000087470|O00429-4|DNM1L REV__nc|ENSG00000087470|O00429-4|DNM1L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 524.282723 1046.55089 -0.17314 -9.0772E-05 -0.89407 -0.00046874 -1.0672 -0.00055952 524.2823271690772 87.294 0.70308 83.325 82.941 83.644 -3.9695 -0.057722 0.00026011 NaN 6.7232 39 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2568000 + 21639 14504 14180 14185 0.02947974674748366 ISNPNSIFR 9 Unmodified _ISNPNSIFR_ 0 0 0 REV__nc|ENSG00000087470|O00429-4|DNM1L REV__nc|ENSG00000087470|O00429-4|DNM1L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.282723 1046.55089 0.17583 9.2187E-05 -1.4875 -0.00077986 -1.3116 -0.00068767 524.282099771907 87.08 0.62781 83.351 83.085 83.713 -3.7289 -0.031107 -0.00036213 NaN 6.7232 34 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3407100 + 21640 14504 14180 14185 0.02947974674748366 ISNPRNTAA 9 Unmodified _ISNPRNTAA_ 0 0 0 REV__ENSG00000165280|ENST00000358901|VCP REV__ENSG00000165280|ENST00000358901|VCP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1704406738281 3 315.170041 942.488293 NaN NaN NaN NaN NaN NaN NaN 93.684 1 93.684 93.184 94.184 0 0 0 0 0.23508 1 18336 18336 1.0715 0 1 + 21641 17753 14181 14186 21460 21460 0.01474828606558276 ISNPRNTAA 9 Unmodified _ISNPRNTAA_ 0 0 0 REV__ENSG00000165280|ENST00000358901|VCP REV__ENSG00000165280|ENST00000358901|VCP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.20001220703125 3 315.170041 942.488293 NaN NaN NaN NaN NaN NaN NaN 79.885 1 76.375 75.875 76.875 -3.5102 0 0 0 0.23508 1 15601 15601 1.1933 0 1 + 21642 17753 14181 14186 21461 21461 0.01474828606558276 ISNPRNTAA 9 Unmodified _ISNPRNTAA_ 0 0 0 REV__ENSG00000165280|ENST00000358901|VCP REV__ENSG00000165280|ENST00000358901|VCP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1705322265625 3 315.170041 942.488293 NaN NaN NaN NaN NaN NaN NaN 82.679 1 79.071 78.571 79.571 -3.6079 0 0 0 0.23508 1 16157 16157 1.1933 0 1 + 21643 17753 14181 14186 21462 21462 0.01474828606558276 ISNPRNTAA 9 Unmodified _ISNPRNTAA_ 0 0 0 REV__ENSG00000165280|ENST00000358901|VCP REV__ENSG00000165280|ENST00000358901|VCP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.16998291015625 3 315.170041 942.488293 NaN NaN NaN NaN NaN NaN NaN 85.399 1 81.735 81.235 82.235 -3.6641 0 0 0 0.23508 1 16696 16696 1.0715 0 1 + 21644 17753 14181 14186 21463 21463 0.01474828606558276 ISNSLCLIAMI 11 Unmodified _ISNSLCLIAMI_ 0 0 0 REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2715454101562 2 589.319602 1176.62465 0.43261 0.00025494 -0.99116 -0.00058411 -0.55856 -0.00032917 589.3189703389662 81.861 0.72982 78.304 77.959 78.689 -3.557 51 20 3 0 0 0 0.57511 2 16008 16008;16014 19.362 3.2128 1 6657500 + 21645 25273 14182 14187 21464;21465 21464 0.04340438730559981 ISNSLCLIAMI 11 Unmodified _ISNSLCLIAMI_ 0 0 0 REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 589.319602 1176.62465 0.72332 0.00042626 -1.1496 -0.00067746 -0.42625 -0.0002512 589.318935782408 78.361 0.70538 78.361 77.944 78.649 0 -0.040152 -0.00037875 NaN 19.362 38 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6197000 + 21646 25273 14182 14187 0.04340438730559981 ISNSLCLIAMI 11 Unmodified _ISNSLCLIAMI_ 0 0 0 REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 589.319602 1176.62465 -0.13478 -7.9429E-05 -0.36146 -0.00021302 -0.49624 -0.00029245 589.3193904714242 82.151 0.76284 78.463 78.081 78.844 -3.6879 0.062253 0.00055014 NaN 19.362 47 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6665100 + 21647 25273 14182 14187 0.04340438730559981 ISNVKAFARPP 11 Unmodified _ISNVKAFARPP_ 0 0 0 REV__ENST00000544724.5_1_12:122337523-122354214:+|nuORF REV__ENST00000544724.5_1_12:122337523-122354214:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 600.3411865234375 2 600.348397 1198.68224 NaN NaN NaN NaN NaN NaN NaN 166.96 1 162.17 161.67 162.67 -4.7898 0 0 0 0.23087 1 33606 33606 7.609 0 1 + 21648 15219 14183 14188 21466 21466 0.0908478504265986 ISNVLLHQY 9 Unmodified _ISNVLLHQY_ 0 0 0 REV__ENSG00000184867|ENST00000356824|ARMCX2 REV__ENSG00000184867|ENST00000356824|ARMCX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7962036132812 2 543.800749 1085.58694 0.32079 0.00017445 0.40965 0.00022277 0.73045 0.00039722 543.802706113537 113.67 0.18102 113.67 113.55 113.73 0 6 4 2 0 0 0 0.54354 1 22351 22351 16.942 0 1 967260 + 21649 18919 14184 14189 21467 21467 0.04757431851635374 ISNYEFNG 8 Unmodified _ISNYEFNG_ 0 0 0 REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1 REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1436462402344 3 315.14338 942.408311 NaN NaN NaN NaN NaN NaN NaN 95.191 1 91.141 90.641 91.641 -4.0496 0 0 0 0.21486 1 18657 18657 1.3295 0 1 + 21650 24981 14185 14190 21468 21468 -0.06519657787271171 ISPASLASLYE 11 Unmodified _ISPASLASLYE_ 0 0 0 ENST00000535398.5_1_13:111298395-111353838:-|nuORF;CARS2|p.D338Mfs*44|1|0.42|ENSG00000134905|chr13:110651077-110651077|G/-|frameshift_variant;ENSG00000134905|ENST00000257347|CARS2 ENST00000535398.5_1_13:111298395-111353838:-|nuORF ENST00000535398.5_1_13:111298395-111353838:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.311279296875 2 575.803154 1149.59175 0.15135 8.7149E-05 -0.06021 -3.4669E-05 0.091142 5.248E-05 575.8031031243903 135.6 0.49661 130.7 130.46 130.96 -4.8951 21 13 2 0 0 0 0.91597 1 26099 26099 10.8 2.644 1 3769000 21651 393 14186 14191 21469 21469 0.02294271203709286 ISPCFKNF 8 Unmodified _ISPCFKNF_ 0 0 0 ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36 ENSG00000163482|ENST00000295709|STK36 ENSG00000163482|ENST00000295709|STK36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.739501953125 2 478.238938 954.463324 -0.079541 -3.804E-05 -0.59336 -0.00028377 -0.6729 -0.00032181 478.2386135453138 133.2 0.87036 133.2 132.86 133.73 0 40 24 2 0 0 0 8448 1 26460 26460 1.7423 0.28721 1 3463400 21652 5432 14187 14192 21470 21470 -0.01572942520374454 ISPEARRK 8 Unmodified _ISPEARRK_ 0 0 0 ENSG00000196227|ENST00000360816|FAM217B;FAM217B|p.T210Lfs*9|1|0.28|ENSG00000196227|chr20:59944565-59944565|C/-|frameshift_variant ENSG00000196227|ENST00000360816|FAM217B ENSG00000196227|ENST00000360816|FAM217B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74334716796875 2 478.785433 955.556313 0.37515 0.00017962 -0.1355 -6.4873E-05 0.23966 0.00011474 478.78534542806284 153.42 0.66727 148.2 147.72 148.38 -5.2209 31 18 2 0 0 0 0.73936 1 29663 29663 8.5933 0.68312 1 2598200 21653 7248 14188 14193 21471 21471 0.07675698257230579 ISPEARRK 8 Unmodified _ISPEARRK_ 0 0 0 ENSG00000196227|ENST00000360816|FAM217B;FAM217B|p.T210Lfs*9|1|0.28|ENSG00000196227|chr20:59944565-59944565|C/-|frameshift_variant ENSG00000196227|ENST00000360816|FAM217B ENSG00000196227|ENST00000360816|FAM217B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.785433 955.556313 0.37515 0.00017962 -0.1355 -6.4873E-05 0.23966 0.00011474 478.78534542806284 153.42 0.66727 148.2 147.72 148.38 -5.2209 -0.0041274 -5.0539E-05 NaN 8.5933 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2598200 21654 7248 14188 14193 0.07675698257230579 ISPEEIDLK 9 Unmodified _ISPEEIDLK_ 0 0 0 nc|ENSG00000095637|Q9BX66-6|SORBS1;SORBS1|p.A1135Qfs*17|1|0.24|ENSG00000095637|chr10:95336757-95336757|C/-|frameshift_variant;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;nc|ENSG00000095637|Q9BX66-12|SORBS1 nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-12|SORBS1 nc|ENSG00000095637|Q9BX66-6|SORBS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.257080078125 2 522.284597 1042.55464 0.20506 0.0001071 -4.4138 -0.0023053 -4.2088 -0.0021982 522.2838459570072 149.08 0.13571 149.08 148.99 149.13 0 5 3 2 0 0 0 0.48644 1 29837 29837 20.454 1.0146 1 1111600 21655 1866;12251 14189 14194 21472 21472 0.03506599657953302 ISPGGPLCWAP 11 Unmodified _ISPGGPLCWAP_ 0 0 0 ENST00000418309.1_1_7:156396604-156398412:-|nuORF;ENST00000440711.1_1_7:156397865-156398412:-|nuORF;ENST00000447933.5_1_7:156265368-156398412:-|nuORF ENST00000418309.1_1_7:156396604-156398412:-|nuORF ENST00000418309.1_1_7:156396604-156398412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 549.3800659179688 2 549.276052 1096.53755 NaN NaN NaN NaN NaN NaN NaN 166.81 1 161.92 161.42 162.42 -4.8916 0 0 0 0.224 1 32723 32723 13.042 1.4022 1 21656 9641 14190 14195 21473 21473 -0.006855994288343936 ISPHISPRISP 11 Unmodified _ISPHISPRISP_ 0 0 0 REV__ENST00000501520.1_1_16:28303156-28303378:-|nuORF REV__ENST00000501520.1_1_16:28303156-28303378:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2766723632812 2 602.345855 1202.67716 NaN NaN NaN NaN NaN NaN NaN 118.5 1 114 113.5 114.5 -4.502 0 0 0 0.22943 1 23368 23368 8.7454 3.0136 1 + 21657 22432 14191 14196 21474 21474 0.08392481180044342 ISPKEGWQV 9 Unmodified _ISPKEGWQV_ 0 0 0 ENSG00000118733|ENST00000370103|OLFM3;nc|ENSG00000118733|Q96PB7|OLFM3;nc|ENSG00000118733|Q96PB7-4|OLFM3;nc|ENSG00000118733|Q96PB7-2|OLFM3 ENSG00000118733|ENST00000370103|OLFM3 ENSG00000118733|ENST00000370103|OLFM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27978515625 2 522.279649 1042.54475 0.28345 0.00014804 -0.31558 -0.00016482 -0.032125 -1.6778E-05 522.2794941661693 109.6 0.82435 109.6 109.19 110.02 0 52 23 3 0 0 0 0.60061 1 21502 21502 13.042 0.80181 1 7057100 21658 3048 14192 14197 21475 21475 0.025174564432290936 ISPQGAWAV 9 Unmodified _ISPQGAWAV_ 0 0 0 REV__ENST00000589261.5_2_19:10449435-10449537:-|nuORF REV__ENST00000589261.5_2_19:10449435-10449537:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2493896484375 2 464.747985 927.481417 0.10916 5.0731E-05 0.13845 6.4342E-05 0.2476 0.00011507 464.7480445805441 97.342 0.27283 93.108 92.916 93.189 -4.2348 10 7 2 0 0 0 0.42844 1 18582 18582 24.021 2.2739 1 850550 + 21659 23310 14193 14198 21476 21476 0.01477515725991907 ISPRHVTP 8 Unmodified _ISPRHVTP_ 0 0 0 REV__ENST00000460085.1_1_22:18095975-18111476:-|nuORF REV__ENST00000460085.1_1_22:18095975-18111476:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76263427734375 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 64.989 1 61.942 61.442 62.442 -3.047 0 0 0 0.2343 1 12573 12573 0.62683 0.37535 1 + 21660 21873 14194 14199 21477 21477 0.051766243371730525 ISPSDPPPP 9 Unmodified _ISPSDPPPP_ 0 0 0 REV__ENSG00000180921|ENST00000388913|FAM83H REV__ENSG00000180921|ENST00000388913|FAM83H MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74951171875 2 453.732 905.449448 NaN NaN NaN NaN NaN NaN NaN 74.129 1 70.535 70.035 71.035 -3.594 0 0 0 0.21848 1 14073 14073 18.135 1.1927 1 + 21661 18706 14195 14200 21478 21478 -0.007058967478201339 ISPSHSPRHLL 11 Unmodified _ISPSHSPRHLL_ 0 0 0 ENST00000442440.1_1_20:23337408-23337708:-|nuORF ENST00000442440.1_1_20:23337408-23337708:-|nuORF ENST00000442440.1_1_20:23337408-23337708:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.778076171875 2 622.348929 1242.6833 0.40061 0.00024932 -1.0581 -0.00065848 -0.65744 -0.00040916 622.3494808221355 140.22 0.142 140.22 140.12 140.26 0 5 3 2 0 0 0 0.92792 1 27897 27897 5.2969 1.3525 1 3538400 21662 9900 14196 14201 21479 21479 0.07166999411560937 ISPSTHDYY 9 Unmodified _ISPSTHDYY_ 0 0 0 REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1 REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2757568359375 2 541.743096 1081.47164 0.26075 0.00014126 -0.019743 -1.0696E-05 0.241 0.00013056 541.7430703450327 96.648 0.49082 92.55 92.349 92.839 -4.0978 27 13 3 0 0 0 0.72864 1 18943 18943 16.942 2.104 1 1749700 + 21663 25254 14197 14202 21480 21480 -0.06583717070066086 ISPSTHDYY 9 Unmodified _ISPSTHDYY_ 0 0 0 REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1 REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.743096 1081.47164 0.11067 5.9957E-05 0.18328 9.9289E-05 0.29395 0.00015925 541.7431165836066 92.324 0.55276 92.324 92.056 92.609 0 -0.16502 0.00010441 NaN 16.942 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1378600 + 21664 25254 14197 14202 -0.06583717070066086 ISQERFLDELE 11 Unmodified _ISQERFLDELE_ 0 0 0 ENSG00000183978|ENST00000328434|COA3 ENSG00000183978|ENST00000328434|COA3 ENSG00000183978|ENST00000328434|COA3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2328796386719 3 460.233146 1377.67761 NaN NaN NaN NaN NaN NaN NaN 134.94 1 130.12 129.62 130.62 -4.8175 0 0 0 0.22632 1 25978 25978 0.026206 0 1 21665 6884 14198 14203 21481 21481 0.003878113185919574 ISQILPMPRP 10 Unmodified _ISQILPMPRP_ 0 0 0 REV__ENSG00000189350|ENST00000379558|TOGARAM2 REV__ENSG00000189350|ENST00000379558|TOGARAM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3341674804688 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 47.019 1 44.178 43.678 44.678 -2.8409 0 0 0 0.22588 1 8873 8873 13.042 0 1 + 21666 19205 14199 14204 21482 21482 0.08394924421986616 ISQMKACDGI 10 Unmodified _ISQMKACDGI_ 0 0 0 CFI|p.N549Kfs*19|1|0.2|ENSG00000205403|chr4:109740998-109740999|-/T|frameshift_variant;ENSG00000205403|ENST00000394634|CFI CFI|p.N549Kfs*19|1|0.2|ENSG00000205403|chr4:109740998-109740999|-/T|frameshift_variant CFI|p.N549Kfs*19|1|0.2|ENSG00000205403|chr4:109740998-109740999|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.283203125 2 533.257002 1064.49945 0.10696 5.7037E-05 -1.9523 -0.0010411 -1.8453 -0.00098404 533.2556531626648 93.705 0.21219 89.861 89.71 89.922 -3.844 7 5 2 0 0 0 0.54036 1 17972 17972 24.021 1.2843 1 458420 21667 508 14200 14205 21483 21483 -0.030218534058349178 ISQPLEGAGAT 11 Unmodified _ISQPLEGAGAT_ 0 0 0 nc|ENSG00000012061|P07992-3|ERCC1;ENST00000588300.1_1_19:45920077-45926632:-|nuORF;ENST00000592905.5_1_19:45918043-45926632:-|nuORF;nc|ENSG00000012061|P07992-2|ERCC1;ENSG00000012061|ENST00000300853|ERCC1 nc|ENSG00000012061|P07992-3|ERCC1 nc|ENSG00000012061|P07992-3|ERCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2710571289062 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 123.93 1 119.34 118.84 119.84 -4.5926 0 0 0 0.22683 1 23851 23851 10.8 0.61611 1 21668 12208 14201 14206 21484 21484 0.009925448553985916 ISQRHLTKKY 10 Unmodified _ISQRHLTKKY_ 0 0 0 tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24951171875 3 425.250695 1272.73025 NaN NaN NaN NaN NaN NaN NaN 108.54 1 104.09 103.59 104.59 -4.4518 0 0 0 0.22588 1 20832 20832 3.3196 0.68841 1 21669 26063 14202 14207 21485 21485 0.10479858962685284 ISQSTFNNPRP 11 Unmodified _ISQSTFNNPRP_ 0 0 0 ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7639770507812 2 630.820201 1259.62585 NaN NaN NaN NaN NaN NaN NaN 152.74 1 147.47 146.97 147.97 -5.2669 0 0 0 0.19759 1 29610 29610 19.362 0 1 21670 4296 14203 14208 21486 21486 0.006421124153121127 ISQWHLRF 8 Unmodified _ISQWHLRF_ 0 0 0 REV__DIP2B|p.G92Efs*63|1|0.14|ENSG00000066084|chr12:50640822-50640822|G/-|frameshift_variant REV__DIP2B|p.G92Efs*63|1|0.14|ENSG00000066084|chr12:50640822-50640822|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.783447265625 2 543.795801 1085.57705 NaN NaN NaN NaN NaN NaN NaN 144.39 1 139.32 138.82 139.82 -5.0671 0 0 0 0.21486 1 27855 27855 10.824 1.4408 1 + 21671 13684 14204 14209 21487 21487 0.03768288636888428 ISQWHLRF 8 Unmodified _ISQWHLRF_ 0 0 0 REV__DIP2B|p.G92Efs*63|1|0.14|ENSG00000066084|chr12:50640822-50640822|G/-|frameshift_variant REV__DIP2B|p.G92Efs*63|1|0.14|ENSG00000066084|chr12:50640822-50640822|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7862548828125 2 543.795801 1085.57705 NaN NaN NaN NaN NaN NaN NaN 148.09 1 142.94 142.44 143.44 -5.1557 0 0 0 0.21452 1 28664 28664 13.508 2.684 1 + 21672 13684 14204 14209 21488 21488 0.03768288636888428 ISQYLNGHDN 10 Unmodified _ISQYLNGHDN_ 0 0 0 REV__RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant REV__RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.8155517578125 3 387.515877 1159.5258 -0.14101 -5.4643E-05 0.13372 5.1818E-05 -0.0072899 -2.8249E-06 387.5159226256497 18.995 0.66017 18.995 18.719 19.38 0 44 18 3 0 0 0 1.1322 1 3144 3144 0.013265 0.013265 1 5076300 + 21673 24561 14205 14210 21489 21489 -0.047581249184759145 ISQYLNGHDN 10 Unmodified _ISQYLNGHDN_ 0 0 0 REV__RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant REV__RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 387.515877 1159.5258 0.11241 4.356E-05 -0.015851 -6.1424E-06 0.096559 3.7418E-05 387.5158496148635 20.583 0.6396 19.186 18.93 19.57 -1.3966 0.089293 -0.0001368 NaN 0.013265 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 5096800 + 21674 24561 14205 14210 -0.047581249184759145 ISQYLNGHDN 10 Unmodified _ISQYLNGHDN_ 0 0 0 REV__RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant REV__RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 387.515877 1159.5258 -0.24832 -9.6229E-05 0.15529 6.0177E-05 -0.093033 -3.6052E-05 387.51590311469295 20.495 0.66518 19.11 18.811 19.476 -1.3847 0.013075 6.2156E-05 NaN 0.013265 46 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4059500 + 21675 24561 14205 14210 -0.047581249184759145 ISRAGYHVNY 10 Unmodified _ISRAGYHVNY_ 0 0 0 REV__ENST00000538021.5_2_11:72004413-72018253:-|nuORF REV__ENST00000538021.5_2_11:72004413-72018253:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2530517578125 2 590.298904 1178.58326 NaN NaN NaN NaN NaN NaN NaN 136.27 1 131.44 130.94 131.94 -4.8307 0 0 0 0.22588 1 26237 26237 9.3831 1.473 1 + 21676 17482 14206 14211 21490 21490 0.0011076207774749491 ISREFFMSY 9 Unmodified _ISREFFMSY_ 0 0 0 ENST00000528057.5_2_11:64139022-64139445:+|nuORF ENST00000528057.5_2_11:64139022-64139445:+|nuORF ENST00000528057.5_2_11:64139022-64139445:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.263671875 2 590.278792 1178.54303 0.48435 0.0002859 0.82424 0.00048653 1.3086 0.00077243 590.7799750421726 138.29 0.1761 133.37 133.32 133.49 -4.9216 6 4 2 0 0 0 0.6329 1 26611 26611 10.824 2.2306 1 1282900 21677 10931 14207 14212 21491 21491 -0.039099206370337924 ISRIEELRAWY 11 Unmodified _ISRIEELRAWY_ 0 0 0 TBC1D5|p.F566Lfs*23|1|0.22|ENSG00000131374|chr3:17214261-17214261|A/-|frameshift_variant;nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5 TBC1D5|p.F566Lfs*23|1|0.22|ENSG00000131374|chr3:17214261-17214261|A/-|frameshift_variant TBC1D5|p.F566Lfs*23|1|0.22|ENSG00000131374|chr3:17214261-17214261|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 718.263427734375 2 718.388251 1434.76195 NaN NaN NaN NaN NaN NaN NaN 162.49 1 157.34 156.84 157.84 -5.1438 0 0 0 0.23087 1 31573 31573 7.609 2.3121 1 21678 3670 14208 14213 21492 21492 0.061958069259844706 ISRIGLAW 8 Unmodified _ISRIGLAW_ 0 0 0 REV__ENST00000378701.5_1_5:132099570-132099961:-|nuORF REV__ENST00000378701.5_1_5:132099570-132099961:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23846435546875 2 458.27417 914.533787 NaN NaN NaN NaN NaN NaN NaN 90.66 1 86.8 86.3 87.3 -3.8595 0 0 0 0.21181 1 17738 17738 15.768 1.1865 1 + 21679 21121 14209 14214 21493 21493 0.07310098859591108 ISRKAQHKL 9 Unmodified _ISRKAQHKL_ 0 0 0 REV__ENSG00000142623|ENST00000375471|PADI1 REV__ENSG00000142623|ENST00000375471|PADI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2711791992188 2 540.835457 1079.65636 0.29959 0.00016203 1.1639 0.00062948 1.4635 0.0007915 541.3388022812106 142.71 0.17102 142.71 142.58 142.76 0 5 4 2 0 0 0 0.79204 1 28463 28463 3.9444 0 1 1687700 + 21680 16681 14210 14215 21494 21494 0.11971935591031979 ISRKRHGVQ 9 Unmodified _ISRKRHGVQ_ 0 0 0 ENST00000580601.5_1_17:73688374-73688542:+|nuORF ENST00000580601.5_1_17:73688374-73688542:+|nuORF ENST00000580601.5_1_17:73688374-73688542:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.270751953125 2 540.822881 1079.63121 0.29105 0.00015741 -1.1711 -0.00063335 -0.88004 -0.00047594 540.821382248035 131.89 0.13847 131.89 131.82 131.96 0 5 3 2 0 0 0 0.80521 1 26075 26075 3.5965 0 1 3809800 21681 11499 14211 14216 21495 21495 0.09457880788454531 ISRLKIAKR 9 Unmodified _ISRLKIAKR_ 0 0 0 ENST00000533232.5_1_17:70077499-70080101:-|nuORF;ENST00000533996.5_1_17:70072759-70080101:-|nuORF;ENST00000434703.5_1_17:70072759-70080101:-|nuORF ENST00000533232.5_1_17:70077499-70080101:-|nuORF ENST00000533232.5_1_17:70077499-70080101:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.2525634765625 3 362.248625 1083.72405 0.62506 0.00022643 -0.31942 -0.00011571 0.30564 0.00011072 362.2483389636835 27.753 0.59541 25.971 25.737 26.332 -1.7821 39 16 4 0 0 0 0.64461 1 4945 4945 0.20686 0.13359 1 1675900 21682 9818 14212 14217 21496 21496 0.185533855218182 ISRLKIAKR 9 Unmodified _ISRLKIAKR_ 0 0 0 ENST00000533232.5_1_17:70077499-70080101:-|nuORF;ENST00000533996.5_1_17:70072759-70080101:-|nuORF;ENST00000434703.5_1_17:70072759-70080101:-|nuORF ENST00000533232.5_1_17:70077499-70080101:-|nuORF ENST00000533232.5_1_17:70077499-70080101:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 362.248625 1083.72405 0.22146 8.0223E-05 -0.80353 -0.00029108 -0.58207 -0.00021085 362.2482796656812 27.538 0.73232 25.782 25.443 26.175 -1.7552 -0.045684 -0.00050152 NaN 0.20686 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1421000 21683 9818 14212 14217 0.185533855218182 ISRLKIAKR 9 Unmodified _ISRLKIAKR_ 0 0 0 ENST00000533232.5_1_17:70077499-70080101:-|nuORF;ENST00000533996.5_1_17:70072759-70080101:-|nuORF;ENST00000434703.5_1_17:70072759-70080101:-|nuORF ENST00000533232.5_1_17:70077499-70080101:-|nuORF ENST00000533232.5_1_17:70077499-70080101:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 362.248625 1083.72405 -0.46696 -0.00016916 0.34677 0.00012562 -0.12019 -4.3538E-05 362.2485012217352 27.727 0.52716 25.731 25.502 26.029 -1.9962 -0.09709 0.00074857 NaN 0.20686 35 14 4 NaN NaN NaN NaN 0 NaN NaN 0 1465000 21684 9818 14212 14217 0.185533855218182 ISRPPTVLY 9 Unmodified _ISRPPTVLY_ 0 0 0 REV__tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1 REV__tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7008666992188 2 523.305667 1044.59678 -0.45854 -0.00023996 -0.39844 -0.00020851 -0.85698 -0.00044846 523.8068816047187 83.664 0.29407 79.79 79.641 79.935 -3.8736 12 7 2 0 0 0 0.7906 1 15868 15868 13.042 9.0981 1 1032600 + 21685 25109 14213 14218 21497 21497 0.0762661985700106 ISRPPTVLY 9 Unmodified _ISRPPTVLY_ 0 0 0 REV__tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1 REV__tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.305667 1044.59678 -0.015097 -7.9003E-06 -1.1045 -0.00057801 -1.1196 -0.00058591 523.8067955376154 83.564 0.17534 79.865 79.795 79.97 -3.6985 0.03749 -0.00031173 NaN 8.7454 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 549710 + 21686 25109 14213 14218 0.0762661985700106 ISRSLILFAKL 11 Unmodified _ISRSLILFAKL_ 0 0 0 ENST00000520481.1_1_8:28304597-28321161:-|nuORF ENST00000520481.1_1_8:28304597-28321161:-|nuORF ENST00000520481.1_1_8:28304597-28321161:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7659912109375 2 630.905548 1259.79654 NaN NaN NaN NaN NaN NaN NaN 98.441 1 94.308 93.808 94.808 -4.1326 0 0 0 0.23698 1 19330 19330 2.7352 1.0826 1 21687 10834 14214 14219 21498 21498 0.17703674804738512 ISRTKSGFGI 10 Unmodified _ISRTKSGFGI_ 0 0 0 REV__ENSG00000080200|ENST00000389622|CRYBG3 REV__ENSG00000080200|ENST00000389622|CRYBG3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2848510742188 2 533.306198 1064.59784 NaN NaN NaN NaN NaN NaN NaN 162.28 1 157.1 156.6 157.6 -5.1878 0 0 0 0.22588 1 31505 31505 8.7454 1.4562 1 + 21688 14406 14215 14220 21499 21499 0.06812834225888764 ISRTQCGSVM 10 Unmodified _ISRTQCGSVM_ 0 0 0 REV__ENSG00000130764|ENST00000378251|LRRC47 REV__ENSG00000130764|ENST00000378251|LRRC47 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2609252929688 2 541.260076 1080.5056 NaN NaN NaN NaN NaN NaN NaN 163.96 1 159.17 158.67 159.67 -4.7898 0 0 0 0.22588 1 32725 32725 8.7454 0.15213 1 + 21689 16031 14216 14221 21500 21500 -0.03143335174308959 ISRVTPAMNV 10 Unmodified _ISRVTPAMNV_ 0 0 0 ENST00000298510.3_1_10:120927456-120927543:-|nuORF ENST00000298510.3_1_10:120927456-120927543:-|nuORF ENST00000298510.3_1_10:120927456-120927543:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7776489257812 2 544.300059 1086.58556 0.52917 0.00028803 -0.33645 -0.00018313 0.19272 0.0001049 544.2998722950698 117.69 0.5302 113.28 113.07 113.6 -4.4088 18 14 2 0 0 0 0.59264 1 22675 22675 29.082 0 1 1042300 21690 8527 14217 14222 21501 21501 0.045734744911896996 ISRVTPAMNV 10 Unmodified _ISRVTPAMNV_ 0 0 0 ENST00000298510.3_1_10:120927456-120927543:-|nuORF ENST00000298510.3_1_10:120927456-120927543:-|nuORF ENST00000298510.3_1_10:120927456-120927543:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 544.300059 1086.58556 0.44572 0.00024261 0.082516 4.4914E-05 0.52824 0.00028752 544.3002877985218 117.95 0.60646 113.34 112.99 113.6 -4.6106 0.028739 0.00012584 NaN 29.082 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1272200 21691 8527 14217 14222 0.045734744911896996 ISRWRRILWQR 11 Unmodified _ISRWRRILWQR_ 0 0 0 REV__IMPG2|p.R80W|1|0.35|ENSG00000081148|chr3:101319680-101319680|G/A|missense_variant REV__IMPG2|p.R80W|1|0.35|ENSG00000081148|chr3:101319680-101319680|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3786010742188 2 785.465493 1568.91643 NaN NaN NaN NaN NaN NaN NaN 152.41 1 147.23 146.73 147.73 -5.1759 0 0 0 0.23698 1 29539 29539 1.1933 0 1 + 21692 23660 14218 14223 21502 21502 0.15473100921872174 ISSIGQVQSY 10 Unmodified _ISSIGQVQSY_ 0 0 0 nc|ENSG00000165698|Q96E40-2|SPACA9;ENSG00000165698|ENST00000356311|SPACA9 nc|ENSG00000165698|Q96E40-2|SPACA9 nc|ENSG00000165698|Q96E40-2|SPACA9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2796630859375 2 541.279846 1080.54514 0.18348 9.9314E-05 -0.040985 -2.2184E-05 0.14249 7.7129E-05 541.2797769013686 89.133 0.7784 89.133 88.682 89.461 0 84 21 5 0 0 0 0.26497 1 17462 17462 39.95 1.9757 1 124100000 21693 5653 14219 14224 21503 21503 0.008088313724329055 ISSKWECLK 9 Unmodified _ISSKWECLK_ 0 0 0 ENST00000552818.1_1_12:48535711-48536092:+|nuORF ENST00000552818.1_1_12:48535711-48536092:+|nuORF ENST00000552818.1_1_12:48535711-48536092:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.19586181640625 3 365.195198 1092.56377 NaN NaN NaN NaN NaN NaN NaN 60.588 1 60.588 60.088 61.088 0 0 0 0 0.19687 1 11618 11618 8.1555 7.7473 1 21694 11199 14220 14225 21504 21504 0.02118669742617385 ISSKYNTNL 9 Unmodified _ISSKYNTNL_ 0 0 0 ENST00000491481.1_1_2:136668634-136670100:-|nuORF ENST00000491481.1_1_2:136668634-136670100:-|nuORF ENST00000491481.1_1_2:136668634-136670100:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.1855163574219 3 347.185468 1038.53457 NaN NaN NaN NaN NaN NaN NaN 57.074 1 54.179 53.679 54.679 -2.8944 0 0 0 0.23508 1 10950 10950 4.5289 0 1 21695 10526 14221 14226 21505 21505 0.016848487179913718 ISSRRHKY 8 Unmodified _ISSRRHKY_ 0 0 0 ZNF385D|p.D293Y|1|0.29|ENSG00000151789|chr3:21424040-21424040|C/A|missense_variant ZNF385D|p.D293Y|1|0.29|ENSG00000151789|chr3:21424040-21424040|C/A|missense_variant ZNF385D|p.D293Y|1|0.29|ENSG00000151789|chr3:21424040-21424040|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6773071289062 2 523.796332 1045.57811 NaN NaN NaN NaN NaN NaN NaN 114.55 1 114.55 114.05 115.05 0 0 0 0 0.21486 1 22533 22533 12.532 3.9383 1 21696 26616 14222 14227 21506 21506 0.05714503005788174 ISSTNHALI 9 Unmodified _ISSTNHALI_ 0 0 0 REV__ENSG00000159495|ENST00000452443|TGM7 REV__ENSG00000159495|ENST00000452443|TGM7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73651123046875 2 478.263999 954.513445 NaN NaN NaN NaN NaN NaN NaN 136.84 1 136.84 136.34 137.34 0 0 0 0 0.22251 1 27122 27122 16.942 1.1741 1 + 21697 17375 14223 14228 21507 21507 0.03436883409131042 ISSVCCTCF 9 Unmodified _ISSVCCTCF_ 0 0 0 PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7889099121094 2 481.692649 961.370745 -0.17822 -8.5848E-05 0.10344 4.9824E-05 -0.074785 -3.6023E-05 481.69266364297573 53.487 0.59217 50.603 50.385 50.977 -2.8837 29 16 2 0 0 0 0.72864 1 10236 10236 16.942 8.349 1 2769500 21698 12824 14224 14229 21508 21508 -0.11148531640412784 ISSVCCTCF 9 Unmodified _ISSVCCTCF_ 0 0 0 PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7652893066406 2 481.692649 961.370745 0.088188 4.2479E-05 0.20868 0.00010052 0.29687 0.000143 481.6927215052379 53.76 0.59568 50.651 50.37 50.966 -3.1094 26 16 2 0 0 0 0.72864 1 9935 9935 16.942 5.302 1 3242500 21699 12824 14224 14229 21509 21509 -0.11148531640412784 ISSVCCTCF 9 Unmodified _ISSVCCTCF_ 0 0 0 PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7890319824219 2 481.692649 961.370745 -0.1171 -5.6404E-05 0.27196 0.000131 0.15487 7.4598E-05 481.69278991287933 53.7 0.55348 50.605 50.374 50.928 -3.0954 28 15 2 0 0 0 0.72864 1 9975 9975 16.942 3.4344 1 2407900 21700 12824 14224 14229 21510 21510 -0.11148531640412784 ISSVELWVL 9 Unmodified _ISSVELWVL_ 0 0 0 ENST00000430454.5_1_7:18535437-18542232:+|nuORF ENST00000430454.5_1_7:18535437-18542232:+|nuORF ENST00000430454.5_1_7:18535437-18542232:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6766357421875 2 523.30005 1044.58555 0.53365 0.00027926 -2.6043 -0.0013628 -2.0707 -0.0010836 523.297127936285 116.51 0.10657 112.15 112.06 112.16 -4.3585 4 2 2 0 0 0 0.8319 1 22415 22415 4.3292 0 1 626260 21701 9777 14225 14230 21511 21511 0.06503797762843533 ISTDCYDMF 9 Unmodified _ISTDCYDMF_ 0 0 0 ENSG00000232040|ENST00000452236|SCAND3 ENSG00000232040|ENST00000452236|SCAND3 ENSG00000232040|ENST00000452236|SCAND3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7889404296875 2 547.712093 1093.40963 NaN NaN NaN NaN NaN NaN NaN 129.61 1 124.99 124.49 125.49 -4.6292 0 0 0 0.23508 1 25542 25542 8.5933 0.68312 1 21702 7811 14226 14231 21512 21512 -0.13333527805070844 ISTDCYDMF 9 Unmodified _ISTDCYDMF_ 0 0 0 ENSG00000232040|ENST00000452236|SCAND3 ENSG00000232040|ENST00000452236|SCAND3 ENSG00000232040|ENST00000452236|SCAND3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7756958007812 2 547.712093 1093.40963 NaN NaN NaN NaN NaN NaN NaN 161.27 1 156.04 155.54 156.54 -5.2299 0 0 0 0.23508 1 31322 31322 4.756 0 1 21703 7811 14226 14231 21513 21513 -0.13333527805070844 ISTFRNIEV 9 Unmodified _ISTFRNIEV_ 0 0 0 ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENST00000520482.1_1_8:142168222-142185717:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 79.183 1 79.183 78.683 79.683 0 0 0 0 0.23508 1 15407 15407 10.8 4.5937 1 21704 10835 14227 14232 21514 21514 0.0461712798901317 ISTFRNIEV 9 Unmodified _ISTFRNIEV_ 0 0 0 ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENST00000520482.1_1_8:142168222-142185717:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 107.66 1 107.66 107.16 108.16 0 0 0 0 0.23508 1 21167 21167 7.609 2.3121 1 21705 10835 14227 14232 21515 21515 0.0461712798901317 ISTFRNIEV 9 Unmodified _ISTFRNIEV_ 0 0 0 ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENST00000520482.1_1_8:142168222-142185717:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 121.09 1 116.54 116.04 117.04 -4.5476 0 0 0 0.23508 1 23872 23872 4.5289 0.93237 1 21706 10835 14227 14232 21516 21516 0.0461712798901317 ISTFRNIEV 9 Unmodified _ISTFRNIEV_ 0 0 0 ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENST00000520482.1_1_8:142168222-142185717:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 114.62 1 110.31 109.81 110.81 -4.3136 0 0 0 0.23508 1 22071 22071 7.609 0 1 21707 10835 14227 14232 21517 21517 0.0461712798901317 ISTFRNIEV 9 Unmodified _ISTFRNIEV_ 0 0 0 ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENST00000520482.1_1_8:142168222-142185717:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 121.18 1 116.65 116.15 117.15 -4.5305 0 0 0 0.23508 1 23332 23332 4.5289 0.93237 1 21708 10835 14227 14232 21518 21518 0.0461712798901317 ISTHPAALRT 10 Unmodified _ISTHPAALRT_ 0 0 0 ENST00000341446.8_1_12:125510078-125510192:+|nuORF ENST00000341446.8_1_12:125510078-125510192:+|nuORF ENST00000341446.8_1_12:125510078-125510192:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2716064453125 2 533.803823 1065.59309 0.12839 6.8536E-05 0.74017 0.00039511 0.86856 0.00046364 533.8042430855677 175.01 0.17184 175.01 174.93 175.1 0 6 4 2 0 0 0 1.1313 1 36277 36277 3.8763 0.59502 1 13480000 21709 8858 14228 14233 21519 21519 0.06291950083118536 ISTLTGSEPG 10 Unmodified _ISTLTGSEPG_ 0 0 0 REV__DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant REV__DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2448425292969 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 28.945 1 26.949 26.449 27.449 -1.9962 0 0 0 0.18733 1 4903 4903 30.637 12.49 1 + 21710 13641 14229 14234 21520 21520 -0.005428329272717747 ISTQNRLVR 9 Unmodified _ISTQNRLVR_ 0 0 0 REV__nc|ENSG00000101019|Q9NVA1-5|UQCC1 REV__nc|ENSG00000101019|Q9NVA1-5|UQCC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7918701171875 2 543.822547 1085.63054 0.47965 0.00026084 -0.53114 -0.00028885 -0.051493 -2.8003E-05 543.8229741263093 75.13 0.14417 75.13 75.029 75.173 0 5 3 2 0 0 0 0.7009 1 14579 14579 6.2058 0.47393 1 753550 + 21711 14758 14230 14235 21521 21521 0.09115041348741215 ISTRKKILRG 10 Unmodified _ISTRKKILRG_ 0 0 0 ENST00000521420.5_1_5:156820887-156821010:+|nuORF ENST00000521420.5_1_5:156820887-156821010:+|nuORF ENST00000521420.5_1_5:156820887-156821010:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 586.4847412109375 2 586.385314 1170.75608 NaN NaN NaN NaN NaN NaN NaN 169.59 1 164.72 164.22 165.22 -4.873 0 0 0 2.8426 1 33505 33505 0.063865 0 1 21712 10847 14231 14236 21522 21522 0.1775275320496803 ISTRRLMQF 9 Unmodified _ISTRRLMQF_ 0 0 0 REV__nc|ENSG00000021826|P31327-3|CPS1 REV__nc|ENSG00000021826|P31327-3|CPS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3219604492188 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 72.645 1 69.107 68.607 69.607 -3.5385 0 0 0 0.19649 1 13775 13775 0.40827 0 1 + 21713 13987 14232 14237 21523 21523 0.058808696194319054 ISVGGKFDP 9 Unmodified _ISVGGKFDP_ 0 0 0 REV__ENST00000531344.1_1_8:38099790-38103488:+|nuORF REV__ENST00000531344.1_1_8:38099790-38103488:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24847412109375 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 124.34 1 124.34 123.84 124.84 0 0 0 0 0.23508 1 24514 24514 13.042 2.2185 1 + 21714 14477 14233 14238 21524 21524 0.01858096006139931 ISVGQRRRV 9 Unmodified _ISVGQRRRV_ 0 0 0 REV__ENSG00000163930|ENST00000460680|BAP1 REV__ENSG00000163930|ENST00000460680|BAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.55474853515625 3 357.55623 1069.64686 NaN NaN NaN NaN NaN NaN NaN 122.97 1 122.97 122.47 123.47 0 0 0 0 0.23508 1 24235 24235 4.897 0 1 + 21715 17629 14234 14239 21525 21525 0.11482167305484836 ISVKKLKNI 9 Unmodified _ISVKKLKNI_ 0 0 0 tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1 tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1 tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2818603515625 2 521.852784 1041.69102 NaN NaN NaN NaN NaN NaN NaN 171.46 1 166.55 166.05 167.05 -4.9149 0 0 0 0.23508 1 33959 33959 4.3292 0.38484 1 21716 25924 14235 14240 21526 21526 0.17183758679129824 ISVNFLLPY 9 Unmodified _ISVNFLLPY_ 0 0 0 REV__ENSG00000163217|ENST00000295379|BMP10 REV__ENSG00000163217|ENST00000295379|BMP10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2830810546875 2 533.302593 1064.59063 NaN NaN NaN NaN NaN NaN NaN 143.65 1 138.75 138.25 139.25 -4.8982 0 0 0 0.23508 1 27726 27726 10.074 1.3285 1 + 21717 17554 14236 14241 21527 21527 0.060921016254724236 ISVNGILGT 9 Unmodified _ISVNGILGT_ 0 0 0 REV__ENST00000475707.5_1_3:15080546-15084512:+|nuORF REV__ENST00000475707.5_1_3:15080546-15084512:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2187805175781 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 48.853 1 45.984 45.484 46.484 -2.869 0 0 0 0.22193 1 9247 9247 17.113 3.605 1 + 21718 18558 14237 14242 21528 21528 0.05538382523195651 ISVPKFIQGY 10 Unmodified _ISVPKFIQGY_ 0 0 0 REV__ENST00000523334.1_1_6:114270238-114277280:-|nuORF REV__ENST00000523334.1_1_6:114270238-114277280:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3247680664062 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 132.44 1 127.59 127.09 128.09 -4.8527 0 0 0 2.8426 1 25438 25438 0.84494 0.57955 1 + 21719 22664 14238 14243 21529 21529 0.06935175545504535 ISVTEGFKY 9 Unmodified _ISVTEGFKY_ 0 0 0 REV__ENST00000481871.5_1_1:101455997-101490867:-|nuORF REV__ENST00000481871.5_1_1:101455997-101490867:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2783813476562 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 50.049 1 47.05 46.55 47.55 -2.999 0 0 0 0.23508 1 9159 9159 10.074 0.6908 1 + 21720 15523 14239 14244 21530 21530 0.013946343490943036 ISWKYIKRLKV 11 Unmodified _ISWKYIKRLKV_ 0 0 0 tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1 tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1 tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7271728515625 3 478.63789 1432.89184 NaN NaN NaN NaN NaN NaN NaN 82.385 1 78.511 78.011 79.011 -3.8736 0 0 0 0.23698 1 15654 15654 1.2148 0.65166 1 21721 26268 14240 14245 21531 21531 0.19271027995773693 ISWWGCYSQM 10 Unmodified _ISWWGCYSQM_ 0 0 0 ENSG00000176253|ENST00000641904|OR4K13 ENSG00000176253|ENST00000641904|OR4K13 ENSG00000176253|ENST00000641904|OR4K13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.76513671875 2 630.762452 1259.51035 NaN NaN NaN NaN NaN NaN NaN 107.35 1 102.94 102.44 103.44 -4.4121 0 0 0 2.8426 1 20596 20596 0.0013812 0 1 21722 6458 14241 14246 21532 21532 -0.10902451031552118 ISWWGCYSQM 10 Unmodified _ISWWGCYSQM_ 0 0 0 ENSG00000176253|ENST00000641904|OR4K13 ENSG00000176253|ENST00000641904|OR4K13 ENSG00000176253|ENST00000641904|OR4K13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.760986328125 2 630.762452 1259.51035 NaN NaN NaN NaN NaN NaN NaN 167.89 1 162.94 162.44 163.44 -4.948 0 0 0 0.22588 1 33066 33066 5.7319 0 1 21723 6458 14241 14246 21533 21533 -0.10902451031552118 ISWWGCYSQM 10 Unmodified _ISWWGCYSQM_ 0 0 0 ENSG00000176253|ENST00000641904|OR4K13 ENSG00000176253|ENST00000641904|OR4K13 ENSG00000176253|ENST00000641904|OR4K13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.76318359375 2 630.762452 1259.51035 NaN NaN NaN NaN NaN NaN NaN 44.866 1 42.118 41.618 42.618 -2.7475 0 0 0 2.8426 1 8128 8128 0.0013812 0 1 21724 6458 14241 14246 21534 21534 -0.10902451031552118 ISWYFWNFFRR 11 Unmodified _ISWYFWNFFRR_ 0 0 0 REV__ENSG00000110446|ENST00000227880|SLC15A3 REV__ENSG00000110446|ENST00000227880|SLC15A3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2748413085938 3 541.273611 1620.799 0.30199 0.00016346 0.68183 0.00036906 0.98382 0.00053252 541.2747619249259 136.54 0.16978 136.54 136.41 136.58 0 5 4 2 0 0 0 0.96218 1 27044 27044 0.073264 0 1 3717500 + 21725 15203 14242 14247 21535 21535 0.01343523262380586 ISWYFWNFFRR 11 Unmodified _ISWYFWNFFRR_ 0 0 0 REV__ENSG00000110446|ENST00000227880|SLC15A3 REV__ENSG00000110446|ENST00000227880|SLC15A3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2699584960938 3 541.273611 1620.799 NaN NaN NaN NaN NaN NaN NaN 155.4 1 150.62 150.12 151.12 -4.7791 0 0 0 0.22632 1 30890 30890 0.00056442 0.00056442 1 + 21726 15203 14242 14247 21536 21536 0.01343523262380586 ISWYFWNFFRR 11 Unmodified _ISWYFWNFFRR_ 0 0 0 REV__ENSG00000110446|ENST00000227880|SLC15A3 REV__ENSG00000110446|ENST00000227880|SLC15A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2734985351562 3 541.273611 1620.799 NaN NaN NaN NaN NaN NaN NaN 17.099 1 15.584 15.084 16.084 -1.5148 0 0 0 0.22632 1 2461 2461 0.094841 0 1 + 21727 15203 14242 14247 21537 21537 0.01343523262380586 ISYDRRPRRPW 11 Unmodified _ISYDRRPRRPW_ 0 0 0 REV__ENSG00000099625|ENST00000650044|CBARP REV__ENSG00000099625|ENST00000650044|CBARP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 501.75335693359375 3 501.276014 1500.80621 0.0026495 1.3281E-06 3.3967 0.0017027 3.3993 0.001704 501.2787145446071 162.74 0.10371 157.59 157.51 157.61 -5.1438 4 2 2 0 0 0 0.96192 1 31620 31620 0.45452 0 1 9568400 + 21728 14641 14243 14248 21538 21538 0.0758425586282101 ISYFCMPSF 9 Unmodified _ISYFCMPSF_ 0 0 0 ENST00000445132.2_1_3:46395384-46395600:+|nuORF ENST00000445132.2_1_3:46395384-46395600:+|nuORF ENST00000445132.2_1_3:46395384-46395600:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7936401367188 2 547.737914 1093.46127 NaN NaN NaN NaN NaN NaN NaN 155.74 1 155.74 155.24 156.24 0 0 0 0 0.23508 1 31227 31227 12.532 0 1 21729 9928 14244 14249 21539 21539 -0.0817173932048263 ISYFKVCAPP 10 Unmodified _ISYFKVCAPP_ 0 0 0 ENST00000476771.5_1_19:39379940-39384459:-|nuORF;ENST00000479290.5_1_19:39380134-39380626:-|nuORF ENST00000476771.5_1_19:39379940-39384459:-|nuORF ENST00000476771.5_1_19:39379940-39384459:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2124328613281 3 375.531811 1123.5736 0.26439 9.9288E-05 -0.76546 -0.00028746 -0.50107 -0.00018817 375.531558347136 92.625 0.44984 88.482 88.246 88.696 -4.1435 16 12 2 0 0 0 0.91149 1 17663 17663 3.5871 3.5871 1 1096600 21730 10296 14245 14250 21540 21540 0.016758577480004533 ISYLKSETCGC 11 Unmodified _ISYLKSETCGC_ 0 0 0 ENSG00000125863|ENST00000347364|MKKS ENSG00000125863|ENST00000347364|MKKS ENSG00000125863|ENST00000347364|MKKS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.30078125 2 602.272849 1202.53115 NaN NaN NaN NaN NaN NaN NaN 161.03 1 161.03 160.53 161.53 0 0 0 0 0.23429 1 32338 32338 4.897 0.56777 1 21731 3398 14246 14251 21541 21541 -0.0620190544250363 ISYRTKPP 8 Unmodified _ISYRTKPP_ 0 0 0 ENSG00000146090|ENST00000361132|RASGEF1C;nc|ENSG00000146090|Q8N431-2|RASGEF1C ENSG00000146090|ENST00000361132|RASGEF1C ENSG00000146090|ENST00000361132|RASGEF1C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2539978027344 2 481.276909 960.539266 0.093983 4.5232E-05 0.02894 1.3928E-05 0.12292 5.916E-05 481.27692959380755 60.579 1.8293 57.355 56.533 58.362 -3.2237 85 51 2 0 0 0 0.71273 1 11234 11234 12.532 0.89125 1 1364400 21732 4639 14247 14252 21542 21542 0.057417776514284924 ITAGIYGYSV 10 Unmodified _ITAGIYGYSV_ 0 0 0 REV__ENSG00000197233|ENST00000335302|OR1J2 REV__ENSG00000197233|ENST00000335302|OR1J2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2753295898438 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 83.495 1 79.797 79.297 80.297 -3.6985 0 0 0 0.22588 1 15938 15938 9.3831 2.66 1 + 21733 19315 14248 14253 21543 21543 0.013946343490943036 ITAGRQRIAT 10 Unmodified _ITAGRQRIAT_ 0 0 0 REV__nc|ENSG00000080802|O95628-6|CNOT4 REV__nc|ENSG00000080802|O95628-6|CNOT4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7745361328125 2 543.822547 1085.63054 NaN NaN NaN NaN NaN NaN NaN 55.715 1 52.526 52.026 53.026 -3.1895 0 0 0 0.22588 1 10305 10305 10.074 3.3508 1 + 21734 23955 14249 14254 21544 21544 0.09115041348741215 ITALTNLWY 9 Unmodified _ITALTNLWY_ 0 0 0 ENSG00000143669|ENST00000389793|LYST;ENST00000475277.1_1_1:235876468-235887465:-|nuORF;ENST00000473037.5_1_1:235826242-235897989:-|nuORF ENSG00000143669|ENST00000389793|LYST ENSG00000143669|ENST00000389793|LYST MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7848510742188 2 547.797675 1093.5808 NaN NaN NaN NaN NaN NaN NaN 88.451 1 84.658 84.158 85.158 -3.7926 0 0 0 0.19674 1 17304 17304 0.40827 0.14288 1 21735 4511 14250 14255 21545 21545 0.03774913620077314 ITCFYVIA 8 Unmodified _ITCFYVIA_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2430725097656 2 465.243689 928.472826 NaN NaN NaN NaN NaN NaN NaN 50.394 1 47.349 46.849 47.849 -3.0453 0 0 0 0.23366 1 9233 9233 0.0082765 0 1 + 21736 13476 14251 14256 21546 21546 0.005728257651412605 ITCHPCLLG 9 Unmodified _ITCHPCLLG_ 0 0 0 ENST00000560260.5_1_15:64404820-64422215:+|nuORF ENST00000560260.5_1_15:64404820-64422215:+|nuORF ENST00000560260.5_1_15:64404820-64422215:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7379455566406 2 478.738248 955.461943 -0.32065 -0.00015351 -0.55364 -0.00026505 -0.87429 -0.00041856 478.73804124775756 24.119 0.41986 22.266 22.086 22.505 -1.8534 17 11 2 0 0 0 0.32428 1 3941 3941 30.225 7.0764 1 1140400 21737 11285 14252 14257 21547 21547 -0.01756899880774654 ITDDLNKIY 9 Unmodified _ITDDLNKIY_ 0 0 0 REV__PABPC4L|p.D305N|1|0.23|ENSG00000254535|chr4:134200107-134200107|C/T|missense_variant REV__PABPC4L|p.D305N|1|0.23|ENSG00000254535|chr4:134200107-134200107|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7914428710938 2 547.790047 1093.56554 0.20771 0.00011378 0.95227 0.00052164 1.16 0.00063542 547.7910851084604 78.695 0.32255 75.232 75.002 75.325 -3.4633 13 8 2 0 0 0 0.39189 1 15366 15366 26.268 2.4784 1 802420 + 21738 14552 14253 14258 21548 21548 0.02250002032269549 ITDEEATKSSY 11 Unmodified _ITDEEATKSSY_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;PFKM|p.A266Efs*59|1|0.04|ENSG00000152556|chr12:48134991-48134992|-/AGGGATTT|frameshift_variant;ENST00000546964.5_1_12:48513149-48528944:+|nuORF nc|ENSG00000152556|P08237-2|PFKM nc|ENSG00000152556|P08237-2|PFKM MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7767944335938 2 622.288065 1242.56158 0.44894 0.00027937 -0.53343 -0.00033195 -0.084495 -5.258E-05 622.2876121483965 27.863 0.34092 27.863 27.665 28.006 0 15 9 2 0 0 0 0.47204 1 4908 4908 53.47 31.933 1 797910 21739 4930 14254 14259 21549 21549 -0.05000132252121148 ITDEEATKSSY 11 Unmodified _ITDEEATKSSY_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;PFKM|p.A266Efs*59|1|0.04|ENSG00000152556|chr12:48134991-48134992|-/AGGGATTT|frameshift_variant;ENST00000546964.5_1_12:48513149-48528944:+|nuORF nc|ENSG00000152556|P08237-2|PFKM nc|ENSG00000152556|P08237-2|PFKM MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 622.288065 1242.56158 1.5039 0.00093586 -1.0949 -0.00068136 0.40897 0.0002545 622.2872815957763 29.998 0.34683 27.881 27.701 28.048 -2.1167 -0.053098 -0.00053627 NaN 53.47 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1474400 21740 4930 14254 14259 -0.05000132252121148 ITDEEATKSSY 11 Unmodified _ITDEEATKSSY_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;PFKM|p.A266Efs*59|1|0.04|ENSG00000152556|chr12:48134991-48134992|-/AGGGATTT|frameshift_variant;ENST00000546964.5_1_12:48513149-48528944:+|nuORF nc|ENSG00000152556|P08237-2|PFKM nc|ENSG00000152556|P08237-2|PFKM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 622.288065 1242.56158 0.58138 0.00036179 -0.41154 -0.0002561 0.16984 0.00010569 622.2877388837322 29.898 0.42397 28.005 27.819 28.243 -1.8928 0.070218 0.00031425 NaN 53.47 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1804900 21741 4930 14254 14259 -0.05000132252121148 ITDEEATKSSY 11 Unmodified _ITDEEATKSSY_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;PFKM|p.A266Efs*59|1|0.04|ENSG00000152556|chr12:48134991-48134992|-/AGGGATTT|frameshift_variant;ENST00000546964.5_1_12:48513149-48528944:+|nuORF nc|ENSG00000152556|P08237-2|PFKM nc|ENSG00000152556|P08237-2|PFKM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 622.288065 1242.56158 0.75013 0.0004668 -0.53146 -0.00033072 0.21866 0.00013607 622.2876648992551 30.064 0.38657 27.989 27.76 28.146 -2.0743 0.054828 0.000165 NaN 53.47 20 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1517700 21742 4930 14254 14259 -0.05000132252121148 ITDFSPEWSY 10 Unmodified _ITDFSPEWSY_ 0 0 0 CAMTA2|p.P866Lfs*9|3|0.42|ENSG00000108509|chr17:4972443-4972443|G/-|frameshift_variant;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2 CAMTA2|p.P866Lfs*9|3|0.42|ENSG00000108509|chr17:4972443-4972443|G/-|frameshift_variant CAMTA2|p.P866Lfs*9|3|0.42|ENSG00000108509|chr17:4972443-4972443|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7772827148438 2 622.777136 1243.53972 NaN NaN NaN NaN NaN NaN NaN 155.59 1 150.81 150.31 151.31 -4.7791 0 0 0 0.11575 1 30928 30928 41.84 30.345 1 21743 376 14255 14260 21550 21550 -0.07230892210054662 ITDFSPEWSY 10 Unmodified _ITDFSPEWSY_ 0 0 0 CAMTA2|p.P866Lfs*9|3|0.42|ENSG00000108509|chr17:4972443-4972443|G/-|frameshift_variant;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2 CAMTA2|p.P866Lfs*9|3|0.42|ENSG00000108509|chr17:4972443-4972443|G/-|frameshift_variant CAMTA2|p.P866Lfs*9|3|0.42|ENSG00000108509|chr17:4972443-4972443|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7761840820312 2 622.777136 1243.53972 NaN NaN NaN NaN NaN NaN NaN 155.97 1 150.71 150.21 151.21 -5.2526 0 0 0 0.22588 1 30245 30245 8.1555 1.4324 1 21744 376 14255 14260 21551 21551 -0.07230892210054662 ITDKDDLVK 9 Unmodified _ITDKDDLVK_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A;ENST00000425020.6_1_8:17132428-17137812:+|nuORF;ENST00000520639.1_1_5:153873511-153874012:+|nuORF nc|ENSG00000155975|Q8NEZ2-2|VPS37A nc|ENSG00000155975|Q8NEZ2-2|VPS37A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6801147460938 2 523.790047 1045.56554 0.23497 0.00012308 0.10939 5.7298E-05 0.34436 0.00018037 523.7900486556613 27.728 0.37632 27.728 27.562 27.939 0 17 10 2 0 0 0 0.36193 1 4910 4910 22.775 9.1601 1 720090 21745 5073 14256 14261 21552 21552 0.04458002032242803 ITDKDDLVK 9 Unmodified _ITDKDDLVK_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A;ENST00000425020.6_1_8:17132428-17137812:+|nuORF;ENST00000520639.1_1_5:153873511-153874012:+|nuORF nc|ENSG00000155975|Q8NEZ2-2|VPS37A nc|ENSG00000155975|Q8NEZ2-2|VPS37A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6848754882812 2 523.790047 1045.56554 0.54954 0.00028784 -0.42541 -0.00022283 0.12413 6.5019E-05 523.7897261619348 29.603 0.52201 27.528 27.309 27.831 -2.0743 17 14 2 0 0 0 0.68547 1 5063 5063 19.626 1.2529 1 555150 21746 5073 14256 14261 21553 21553 0.04458002032242803 ITDKDDLVK 9 Unmodified _ITDKDDLVK_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A;ENST00000425020.6_1_8:17132428-17137812:+|nuORF;ENST00000520639.1_1_5:153873511-153874012:+|nuORF nc|ENSG00000155975|Q8NEZ2-2|VPS37A nc|ENSG00000155975|Q8NEZ2-2|VPS37A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.790047 1045.56554 0.42473 0.00022247 -0.89891 -0.00047084 -0.47418 -0.00024837 523.7897610381692 29.564 0.42107 27.568 27.368 27.789 -1.9958 -0.035816 -0.00070822 NaN 17.863 20 11 3 NaN NaN NaN NaN 0 NaN NaN 0 776730 21747 5073 14256 14261 0.04458002032242803 ITDKKILEY 9 Unmodified _ITDKKILEY_ 0 0 0 tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1 tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1 tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2190856933594 3 374.885018 1121.63323 -0.21887 -8.205E-05 0.14068 5.2737E-05 -0.078192 -2.9313E-05 374.8849855643483 101.88 0.68799 97.69 97.304 97.992 -4.1861 33 19 2 0 0 0 0.68708 1 20052 20052 7.1017 0.90987 1 2127200 21748 26048 14257 14262 21554 21554 0.07727451963046406 ITDKKILEY 9 Unmodified _ITDKKILEY_ 0 0 0 tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1 tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1 tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2057189941406 3 374.885018 1121.63323 0.33432 0.00012533 -0.11437 -4.2874E-05 0.21995 8.2457E-05 374.88479270084423 101.95 0.64569 97.628 97.261 97.906 -4.3208 37 18 3 0 0 0 0.54933 2 19510 19510;19539 16.566 7.6395 1 1315800 21749 26048 14257 14262 21555;21556 21555 0.07727451963046406 ITDKKILEY 9 Unmodified _ITDKKILEY_ 0 0 0 tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1 tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1 tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21954345703125 3 374.885018 1121.63323 -0.23762 -8.9079E-05 0.27999 0.00010497 0.042377 1.5887E-05 374.88502410123675 101.79 0.65944 97.768 97.349 98.009 -4.0212 33 18 2 0 0 0 0.46796 1 19553 19553 21.59 9.4154 1 1752200 21750 26048 14257 14262 21557 21557 0.07727451963046406 ITDLPIKL 8 Unmodified _ITDLPIKL_ 0 0 0 ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12 ENST00000584289.5_1_17:65341859-65362635:-|nuORF ENST00000584289.5_1_17:65341859-65362635:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 457.2928771972656 2 456.791861 911.569169 0.27197 0.00012423 0.086072 3.9317E-05 0.35804 0.00016355 456.79184844218867 147.41 0.90944 147.41 146.94 147.85 0 59 25 3 0 0 0 8448 1 29541 29541 33.593 18.115 1 14011000 21751 7339 14258 14263 21558 21558 0.10984716596738053 ITDLPIKL 8 Unmodified _ITDLPIKL_ 0 0 0 ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12 ENST00000584289.5_1_17:65341859-65362635:-|nuORF ENST00000584289.5_1_17:65341859-65362635:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 457.2862548828125 2 456.791861 911.569169 0.088967 4.064E-05 0.16049 7.3312E-05 0.24946 0.00011395 456.7918711913921 152.03 0.82294 146.79 146.46 147.29 -5.2365 55 22 3 0 0 0 8448 1 29463 29463 72.187 20.923 1 9389600 21752 7339 14258 14263 21559 21559 0.10984716596738053 ITDLPIKL 8 Unmodified _ITDLPIKL_ 0 0 0 ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12 ENST00000584289.5_1_17:65341859-65362635:-|nuORF ENST00000584289.5_1_17:65341859-65362635:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 456.791861 911.569169 0.015782 7.2089E-06 0.20203 9.2285E-05 0.21781 9.9494E-05 456.7918766260377 151.48 0.84613 146.73 146.29 147.13 -4.7523 -0.046106 0.00013368 NaN 72.187 55 23 3 NaN NaN NaN NaN 0 NaN NaN 0 8182200 21753 7339 14258 14263 0.10984716596738053 ITDLSLQE 8 Unmodified _ITDLSLQE_ 0 0 0 ENSG00000136541|ENST00000410096|ERMN;nc|ENSG00000136541|Q8TAM6-2|ERMN ENSG00000136541|ENST00000410096|ERMN ENSG00000136541|ENST00000410096|ERMN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2267150878906 2 459.742565 917.470577 NaN NaN NaN NaN NaN NaN NaN 87.99 1 84.198 83.698 84.698 -3.7926 0 0 0 0.19954 1 17208 17208 24.674 0 1 21754 4020 14259 14264 21560 21560 0.008540685610455512 ITDMSDTNW 9 Unmodified _ITDMSDTNW_ 0 0 0 OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant;ENSG00000134996|ENST00000346234|OSTF1 OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant OSTF1|p.K191Rfs*11|1|0.32|ENSG00000134996|chr9:75140914-75140914|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2640380859375 2 541.726589 1081.43863 0.63391 0.00034341 -3.8657 -0.0020942 -3.2318 -0.0017508 542.7278582326609 104.68 0.48508 104.68 104.31 104.79 0 31 13 4 0 0 0 0.80521 1 20513 20513 3.5965 3.1382 1 5555500 21755 3890 14260 14265 21561 21561 -0.09883667184408296 ITDNYPHAI 9 Unmodified _ITDNYPHAI_ 0 0 0 PRKDC|p.Q3527H|1|0.24|ENSG00000253729|chr8:47794379-47794379|C/A|missense_variant PRKDC|p.Q3527H|1|0.24|ENSG00000253729|chr8:47794379-47794379|C/A|missense_variant PRKDC|p.Q3527H|1|0.24|ENSG00000253729|chr8:47794379-47794379|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26123046875 2 522.261456 1042.50836 -0.89984 -0.00046995 1.1099 0.00057965 0.21004 0.0001097 522.2618365449091 110.23 0.691 105.74 105.41 106.11 -4.4915 34 19 2 0 0 0 0.057505 1 21209 21209 68.081 7.6912 1 2388100 21756 12829 14261 14266 21562 21562 -0.011194204534831442 ITDPDPDIRY 10 Unmodified _ITDPDPDIRY_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR;MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2742919921875 2 602.79586 1203.57717 0.92373 0.00055682 -0.56049 -0.00033786 0.36324 0.00021896 602.7954499832977 89.601 0.88274 85.742 85.271 86.154 -3.8595 88 24 5 0 0 0 0.11693 1 17488 17488 96.936 56.986 1 39908000 21757 7494 14262 14267 21563 21563 -0.016478009444199415 ITDPDPDIRY 10 Unmodified _ITDPDPDIRY_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR;MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2772216796875 2 602.79586 1203.57717 0.72545 0.0004373 -0.40029 -0.00024129 0.32516 0.00019601 602.7955915440422 89.773 0.88937 85.728 85.31 86.2 -4.0443 79 24 4 0 0 0 0.14044 1 17133 17133 93.938 53.988 1 30851000 21758 7494 14262 14267 21564 21564 -0.016478009444199415 ITDPDPDIRY 10 Unmodified _ITDPDPDIRY_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR;MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2975463867188 2 602.79586 1203.57717 0.27671 0.0001668 0.012134 7.3143E-06 0.28884 0.00017411 602.7958086585021 89.435 0.90732 85.657 85.209 86.116 -3.7779 85 25 4 0 0 0 0.28351 1 17070 17070 57.249 33.459 1 31895000 21759 7494 14262 14267 21565 21565 -0.016478009444199415 ITDPDPDIRY 10 Unmodified _ITDPDPDIRY_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR;MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 602.79586 1203.57717 0.39581 0.0002386 -0.093957 -5.6637E-05 0.30186 0.00018196 602.7957658038409 85.56 0.8219 85.56 85.149 85.971 0 -0.11207 0.00017773 NaN 96.936 69 22 4 NaN NaN NaN NaN 0 NaN NaN 0 36983000 21760 7494 14262 14267 -0.016478009444199415 ITDQGIEFY 9 Unmodified _ITDQGIEFY_ 0 0 0 ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENSG00000141452|ENST00000269221|RMC1 ENST00000589215.5_1_18:21087981-21111645:+|nuORF ENST00000589215.5_1_18:21087981-21111645:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7841796875 2 543.261122 1084.50769 0.33281 0.0001808 0.18874 0.00010254 0.52155 0.00028334 543.2611860491558 125.54 1.202 125.54 124.9 126.1 0 64 33 3 0 0 0 0.036295 2 24739 24739;24851 54.068 39.082 1 14297000 21761 4370 14263 14268 21566;21567 21566 -0.031182598931764005 ITDQGIEFY 9 Unmodified _ITDQGIEFY_ 0 0 0 ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENSG00000141452|ENST00000269221|RMC1 ENST00000589215.5_1_18:21087981-21111645:+|nuORF ENST00000589215.5_1_18:21087981-21111645:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7747802734375 2 543.261122 1084.50769 0.2153 0.00011696 0.0082287 4.4703E-06 0.22353 0.00012143 543.2610297444536 130.67 0.99155 126.03 125.51 126.5 -4.6359 82 27 4 0 0 0 0.64382 1 25807 25807 10.074 1.3285 1 13741000 21762 4370 14263 14268 21568 21568 -0.031182598931764005 ITDQGIEFY 9 Unmodified _ITDQGIEFY_ 0 0 0 ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENSG00000141452|ENST00000269221|RMC1 ENST00000589215.5_1_18:21087981-21111645:+|nuORF ENST00000589215.5_1_18:21087981-21111645:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7950439453125 2 543.261122 1084.50769 0.26324 0.00014301 0.17084 9.2809E-05 0.43407 0.00023581 543.2611537697683 130.62 1.0335 125.85 125.43 126.46 -4.7725 71 29 3 0 0 0 0.62921 1 25221 25221 30.637 19.813 1 14713000 21763 4370 14263 14268 21569 21569 -0.031182598931764005 ITDVFGRTA 9 Unmodified _ITDVFGRTA_ 0 0 0 nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C;ANKRD36C|p.F1404Lfs*4|1|0.33|ENSG00000174501|chr2:95856049-95856049|A/-|frameshift_variant;nc|ENSG00000196912|Q8N2N9-4|ANKRD36B;nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;nc|ENSG00000196912|Q8N2N9-2|ANKRD36B;ENSG00000196912|ENST00000359901|ANKRD36B nc|ENSG00000174501|Q5JPF3|ANKRD36C nc|ENSG00000174501|Q5JPF3|ANKRD36C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2646179199219 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 61.564 1 58.194 57.694 58.694 -3.3694 0 0 0 0.20699 1 11476 11476 21.537 2.28 1 21764 6353 14264 14269 21570 21570 0.02332883409144415 ITDYLIEEV 9 Unmodified _ITDYLIEEV_ 0 0 0 SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant;nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;SRRT|p.A571T|1|0.42|ENSG00000087087|chr7:100886858-100886858|G/A|missense_variant SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7836303710938 2 547.78443 1093.55431 0.366 0.00020049 -0.63918 -0.00035014 -0.27318 -0.00014965 548.2852237302033 160.18 0.32257 155.38 155.22 155.55 -4.7952 11 8 2 0 0 0 0.5059 1 31848 31848 19.257 0 1 1149100 21765 1704 14265 14270 21571 21571 0.011271799380892844 ITEAPVLDHS 10 Unmodified _ITEAPVLDHS_ 0 0 0 nc|ENSG00000008118|Q96NX5-2|CAMK1G;ENSG00000008118|ENST00000361322|CAMK1G nc|ENSG00000008118|Q96NX5-2|CAMK1G nc|ENSG00000008118|Q96NX5-2|CAMK1G MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2797241210938 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 49.876 1 46.87 46.37 47.37 -3.0068 0 0 0 0.22544 1 9155 9155 19.257 2.3147 1 21766 1036 14266 14271 21572 21572 0.008088313724329055 ITEDLGQIQY 10 Unmodified _ITEDLGQIQY_ 0 0 0 ATP10A|p.K791Rfs*28|1|0.23|ENSG00000206190|chr15:25708273-25708273|T/-|frameshift_variant;ENSG00000206190|ENST00000555815|ATP10A ATP10A|p.K791Rfs*28|1|0.23|ENSG00000206190|chr15:25708273-25708273|T/-|frameshift_variant ATP10A|p.K791Rfs*28|1|0.23|ENSG00000206190|chr15:25708273-25708273|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.255615234375 2 590.298236 1178.58192 NaN NaN NaN NaN NaN NaN NaN 152.48 1 147.25 146.75 147.75 -5.2365 0 0 0 0.22588 1 29562 29562 6.7232 0.51738 1 21767 261 14267 14272 21573 21573 -0.00022916801663086517 ITEDSLDPPP 10 Unmodified _ITEDSLDPPP_ 0 0 0 NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENSG00000110076|ENST00000265459|NRXN2;ENST00000464307.5_1_11:64374670-64390737:-|nuORF;nc|ENSG00000110076|Q9P2S2-2|NRXN2 NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;nc|ENSG00000110076|Q9P2S2-2|NRXN2 nc|ENSG00000110076|Q9P2S2-2|NRXN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7864379882812 2 542.263862 1082.51317 0.091099 4.94E-05 -0.50678 -0.00027481 -0.41568 -0.00022541 542.2635070733113 76.836 1.2518 73.07 72.678 73.93 -3.7664 124 35 5 0 0 0 0.28382 1 14590 14590 4.6586 0 1 109510000 21768 2561;12280 14268 14273 21574 21574 -0.02478581101377131 ITEEMYEY 8 Unmodified _ITEEMYEY_ 0 0 0 DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant;DSEL|p.R969Kfs*4|1|0.26|ENSG00000171451|chr18:67511733-67511734|-/T|frameshift_variant;DSEL|p.R969Efs*16|1|0.36|ENSG00000171451|chr18:67511734-67511734|T/-|frameshift_variant;ENSG00000171451|ENST00000310045|DSEL DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 359.5103759765625 3 359.819686 1076.43723 -0.22187 -7.9834E-05 -1.1762 -0.00042322 -1.3981 -0.00050305 359.81924414866114 31.186 0.70187 31.186 30.793 31.495 0 29 19 2 0 0 0 0.88085 1 5625 5625 1.4551 0.25437 1 1825400 21769 895 14269 14274 21575 21575 -0.0979330127315734 ITEGIKKNY 9 Unmodified _ITEGIKKNY_ 0 0 0 REV__tr|U7SJI7|U7SJI7_FUSNUCRISPR-associatedproteinCsh1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02169PE=4SV=1 REV__tr|U7SJI7|U7SJI7_FUSNUCRISPR-associatedproteinCsh1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02169PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2859497070312 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 88.597 1 88.597 88.097 89.097 0 0 0 0 0.23508 1 17292 17292 10.824 0.75 1 + 21770 24915 14270 14275 21576 21576 0.05690012131753974 ITEIFYEL 8 Unmodified _ITEIFYEL_ 0 0 0 nc|ENSG00000134533|Q96A58-2|RERG;ENSG00000134533|ENST00000256953|RERG nc|ENSG00000134533|Q96A58-2|RERG nc|ENSG00000134533|Q96A58-2|RERG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.1540222167969 3 343.183064 1026.52736 0.0084215 2.8901E-06 -0.25317 -8.6883E-05 -0.24475 -8.3992E-05 343.1829855608774 106.78 0.62601 102.37 102.02 102.65 -4.4121 29 17 2 0 0 0 1.0267 1 20429 20429 0.35063 0 1 2535800 21771 3860 14271 14276 21577 21577 0.015161161175683446 ITEIFYEL 8 Unmodified _ITEIFYEL_ 0 0 0 nc|ENSG00000134533|Q96A58-2|RERG;ENSG00000134533|ENST00000256953|RERG nc|ENSG00000134533|Q96A58-2|RERG nc|ENSG00000134533|Q96A58-2|RERG MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 343.183064 1026.52736 -0.64911 -0.00022276 0.41493 0.0001424 -0.23418 -8.0367E-05 343.18321122630147 106.54 0.55914 102.28 102.04 102.6 -4.2638 -0.085062 0.00037013 NaN 0.35063 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1345200 21772 3860 14271 14276 0.015161161175683446 ITEIFYEL 8 Unmodified _ITEIFYEL_ 0 0 0 nc|ENSG00000134533|Q96A58-2|RERG;ENSG00000134533|ENST00000256953|RERG nc|ENSG00000134533|Q96A58-2|RERG nc|ENSG00000134533|Q96A58-2|RERG MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 343.183064 1026.52736 0.035037 1.2024E-05 -0.036768 -1.2618E-05 -0.0017307 -5.9396E-07 343.1829882075127 106.54 0.51942 102.45 102.16 102.68 -4.0913 0.083655 -9.4911E-05 NaN 0.35063 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2393400 21773 3860 14271 14276 0.015161161175683446 ITEKEAKNY 9 Unmodified _ITEKEAKNY_ 0 0 0 tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1 tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1 tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7842407226562 2 548.287671 1094.56079 0.045197 2.4781E-05 0.28374 0.00015557 0.32894 0.00018035 548.2876328598404 48.697 0.49555 45.698 45.468 45.964 -2.999 33 13 3 0 0 0 0.35995 1 8890 8890 14.957 10.241 1 3575900 21774 25931 14272 14277 21578 21578 0.017291178894765835 ITELMRHGS 9 Unmodified _ITELMRHGS_ 0 0 0 nc|ENSG00000111816|P42685-2|FRK;ENSG00000111816|ENST00000606080|FRK nc|ENSG00000111816|P42685-2|FRK nc|ENSG00000111816|P42685-2|FRK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2653198242188 2 522.268758 1042.52296 NaN NaN NaN NaN NaN NaN NaN 141.28 1 136.63 136.13 137.13 -4.6493 0 0 0 0.17505 1 27903 27903 6.4869 5.8055 1 21775 2649 14273 14278 21579 21579 0.003403284230216741 ITENGFPQSDP 11 Unmodified _ITENGFPQSDP_ 0 0 0 nc|ENSG00000249948|Q9H227|GBA3 nc|ENSG00000249948|Q9H227|GBA3 nc|ENSG00000249948|Q9H227|GBA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.27197265625 2 602.777667 1203.54078 0.10958 6.6051E-05 -0.67409 -0.00040632 -0.56451 -0.00034027 602.777248061886 56.537 0.63316 53.361 53.154 53.787 -3.1761 28 17 3 0 0 0 0.62025 1 10523 10523 34.402 0 1 3516600 21776 12625 14274 14279 21580 21580 -0.05284677841132179 ITEQKQDGYY 10 Unmodified _ITEQKQDGYY_ 0 0 0 REV__PAPPA|p.L1144Dfs*7|1|0.39|ENSG00000182752|chr9:116334893-116334894|CT/-|frameshift_variant REV__PAPPA|p.L1144Dfs*7|1|0.39|ENSG00000182752|chr9:116334893-116334894|CT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.761962890625 2 622.793318 1243.57208 0.4514 0.00028113 0.06485 4.0388E-05 0.51625 0.00032152 622.793359760121 84.851 0.73122 84.851 84.591 85.322 0 51 20 3 0 0 0 0.34654 2 16546 16527;16546 34.402 2.1868 1 4498000 + 21777 18797 14275 14280 21581;21582 21582 -0.03996104807015399 ITETLTQFL 9 Unmodified _ITETLTQFL_ 0 0 0 ENSG00000095464|ENST00000371447|PDE6C ENSG00000095464|ENST00000371447|PDE6C ENSG00000095464|ENST00000371447|PDE6C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28271484375 2 533.294965 1064.57538 0.59394 0.00031674 -0.23781 -0.00012682 0.35613 0.00018992 533.2948298085394 99.064 0.55787 94.795 94.441 94.999 -4.2692 25 15 2 0 0 0 0.79204 1 18876 18876 7.2892 3.3448 1 2549600 21778 1860 14276 14281 21583 21583 0.04567190037596447 ITETVNLHY 9 Unmodified _ITETVNLHY_ 0 0 0 REV__ENST00000586995.5_3_17:67249715-67270153:-|nuORF REV__ENST00000586995.5_3_17:67249715-67270153:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7911987304688 2 545.282389 1088.55022 0.1592 8.6809E-05 -0.49524 -0.00027005 -0.33604 -0.00018324 545.282120975935 86.198 1.5842 82.469 81.991 83.575 -3.7289 166 44 7 0 0 0 0.62102 1 16482 16482 11.64 1.4897 1 324640000 + 21779 12889 14277 14282 21584 21584 0.009491352350551097 ITFDNKAHS 9 Unmodified _ITFDNKAHS_ 0 0 0 ENST00000475312.1_1_1:85491576-85494918:-|nuORF;MCOLN3|p.F321Sfs*24|1|0.23|ENSG00000055732|chr1:85026072-85026072|A/-|frameshift_variant;MCOLN3|p.S471Vfs*3|1|0.31|ENSG00000055732|chr1:85021186-85021186|T/-|frameshift_variant;nc|ENSG00000055732|Q8TDD5-2|MCOLN3;ENST00000394321.9_1_19:7591427-7598678:+|nuORF;ENSG00000055732|ENST00000370589|MCOLN3;ENSG00000090674|ENST00000264079|MCOLN1 ENST00000475312.1_1_1:85491576-85494918:-|nuORF ENST00000475312.1_1_1:85491576-85494918:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.1976013183594 3 344.841813 1031.50361 -0.017135 -5.9089E-06 -0.48005 -0.00016554 -0.49719 -0.00017145 344.8416243118943 45.962 0.83039 45.962 45.554 46.384 0 41 23 2 0 0 0 0.8799 1 8675 8675 0.20686 0 1 1075700 21780 1274 14278 14283 21585 21585 -0.01088304596260059 ITGCMMTFY 9 Unmodified _ITGCMMTFY_ 0 0 0 ENST00000508290.5_1_5:174919260-174936221:+|nuORF;ENST00000513725.1_1_5:174919106-174937211:+|nuORF;ENST00000507823.5_1_5:174919260-174949462:+|nuORF;ENSG00000164466|ENST00000321442|SFXN1 ENST00000508290.5_1_5:174919260-174936221:+|nuORF ENST00000508290.5_1_5:174919260-174936221:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2844848632812 2 533.723949 1065.43335 0.18353 9.7953E-05 -2.0549 -0.0010967 -1.8713 -0.00099878 534.2245114687497 148.64 0.14661 143.93 143.83 143.97 -4.7095 5 3 2 0 0 0 0.8319 1 29516 29516 7.9102 5.3327 1 1633100 21781 5547 14279 14284 21586 21586 -0.09675385572222694 ITGEALVGF 9 Unmodified _ITGEALVGF_ 0 0 0 ENSG00000198691|ENST00000370225|ABCA4 ENSG00000198691|ENST00000370225|ABCA4 ENSG00000198691|ENST00000370225|ABCA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7500915527344 2 453.750193 905.485833 0.24386 0.00011065 0.085354 3.8729E-05 0.32922 0.00014938 453.75012563084294 111.7 0.83435 111.7 111.24 112.08 0 49 23 3 0 0 0 0.095051 2 21965 21909;21965 57.471 11.852 1 5366200 21782 7474 14280 14285 21587;21588 21588 0.029309801489148413 ITGEALVGF 9 Unmodified _ITGEALVGF_ 0 0 0 ENSG00000198691|ENST00000370225|ABCA4 ENSG00000198691|ENST00000370225|ABCA4 ENSG00000198691|ENST00000370225|ABCA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7500915527344 2 453.750193 905.485833 -0.048881 -2.218E-05 0.37322 0.00016935 0.32434 0.00014717 453.7503111255708 115.98 0.76148 111.49 111.1 111.87 -4.486 50 21 3 0 0 0 0.28819 1 22808 22808 32.305 1.6689 1 3394400 21783 7474 14280 14285 21589 21589 0.029309801489148413 ITGEALVGF 9 Unmodified _ITGEALVGF_ 0 0 0 ENSG00000198691|ENST00000370225|ABCA4 ENSG00000198691|ENST00000370225|ABCA4 ENSG00000198691|ENST00000370225|ABCA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.750244140625 2 453.750193 905.485833 0.46119 0.00020926 -0.11472 -5.2056E-05 0.34646 0.00015721 453.7500270966085 115.88 0.77558 111.52 111.11 111.88 -4.3585 48 21 3 0 0 0 0.11447 2 22301 22262;22301 50.855 8.7605 1 3379200 21784 7474 14280 14285 21590;21591 21591 0.029309801489148413 ITGFRLSL 8 Unmodified _ITGFRLSL_ 0 0 0 ENSG00000085871|ENST00000265498|MGST2 ENSG00000085871|ENST00000265498|MGST2 ENSG00000085871|ENST00000265498|MGST2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7586669921875 2 453.774003 905.533452 -0.42897 -0.00019465 0.66973 0.00030391 0.24076 0.00010925 453.7742555679948 106 0.77005 101.74 101.34 102.11 -4.2638 56 21 3 0 0 0 0.5707 1 20800 20800 24.021 0.87215 1 8829900 21785 1685 14281 14286 21592 21592 0.07690679139773238 ITGQLLSKA 9 Unmodified _ITGQLLSKA_ 0 0 0 REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2 REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25933837890625 2 465.784567 929.554582 -0.23226 -0.00010818 0.73582 0.00034273 0.50356 0.00023455 465.7847705132633 110.11 0.55035 105.66 105.45 106 -4.4518 21 15 2 0 0 0 0.85913 1 21137 21137 3.2813 0 1 1793400 + 21786 16242 14282 14287 21593 21593 0.08698644448622872 ITGSSCNGCDM 11 Unmodified _ITGSSCNGCDM_ 0 0 0 REV__ENST00000470153.1_1_7:99717613-99717931:+|nuORF REV__ENST00000470153.1_1_7:99717613-99717931:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7831420898438 2 544.196284 1086.37802 -0.18071 -9.834E-05 -0.92599 -0.00050392 -1.1067 -0.00060226 544.195747641837 37.204 1.6737 34.735 33.797 35.471 -2.4688 57 47 2 0 0 0 0.66106 1 6809 6809 0.00056442 0 1 633950 + 21787 22026 14283 14288 21594 21594 -0.16171843830647958 ITHAVIINY 9 Unmodified _ITHAVIINY_ 0 0 0 sp|P16761|PP85_HCMVAPhosphoprotein85OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL25PE=3SV=1;sp|F5HGJ4|PP85_HCMVMPhosphoprotein85OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL25PE=1SV=1 sp|P16761|PP85_HCMVAPhosphoprotein85OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL25PE=3SV=1 sp|P16761|PP85_HCMVAPhosphoprotein85OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL25PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.263916015625 2 522.297842 1042.58113 NaN NaN NaN NaN NaN NaN NaN 152.36 1 147.61 147.11 148.11 -4.7523 0 0 0 0.23508 1 30275 30275 7.2892 2.5332 1 21788 25739 14284 14289 21595 21595 0.061543333399413314 ITHSEGCHY 9 Unmodified _ITHSEGCHY_ 0 0 0 REV__nc|ENSG00000211672|A0A075B6K6|IGLV4-3 REV__nc|ENSG00000211672|A0A075B6K6|IGLV4-3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6983642578125 2 523.721641 1045.42873 -0.36545 -0.0001914 0.17942 9.3968E-05 -0.18603 -9.7427E-05 523.7214788816088 160.78 0.53304 155.55 155.3 155.83 -5.2299 22 14 2 0 0 0 0.62102 1 31181 31181 11.64 2.2929 1 2210600 + 21789 24249 14285 14290 21596 21596 -0.0921681039910709 ITIFHLVH 8 Unmodified _ITIFHLVH_ 0 0 0 REV__ENSG00000110344|ENST00000252108|UBE4A REV__ENSG00000110344|ENST00000252108|UBE4A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.28973388671875 2 490.28982 978.565087 NaN NaN NaN NaN NaN NaN NaN 127.07 1 127.07 126.57 127.57 0 0 0 0 0.23312 1 25081 25081 6.2058 0 1 + 21790 15198 14286 14291 21597 21597 0.07494671893709892 ITIIQKLS 8 Unmodified _ITIIQKLS_ 0 0 0 tr|U7SKU3|U7SKU3_FUSNUYggTfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01935PE=4SV=1 tr|U7SKU3|U7SKU3_FUSNUYggTfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01935PE=4SV=1 tr|U7SKU3|U7SKU3_FUSNUYggTfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01935PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2969055175781 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 151.29 1 146.53 146.03 147.03 -4.7523 0 0 0 0.23025 1 30056 30056 0.25148 0 1 21791 25968 14287 14292 21598 21598 0.11936118971038923 ITIVILIILI 10 Unmodified _ITIVILIILI_ 0 0 0 REV__PTPRF|p.A1280T|1|0.37|ENSG00000142949|chr1:43606949-43606949|G/A|missense_variant REV__PTPRF|p.A1280T|1|0.37|ENSG00000142949|chr1:43606949-43606949|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2138366699219 3 375.273666 1122.79917 NaN NaN NaN NaN NaN NaN NaN 177.24 1 172.37 171.87 172.87 -4.8739 0 0 0 2.8426 1 35271 35271 0 0 1 + 21792 24531 14288 14293 21599 21599 0.24268130209725314 ITIVILIILI 10 Unmodified _ITIVILIILI_ 0 0 0 REV__PTPRF|p.A1280T|1|0.37|ENSG00000142949|chr1:43606949-43606949|G/A|missense_variant REV__PTPRF|p.A1280T|1|0.37|ENSG00000142949|chr1:43606949-43606949|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2138366699219 3 375.273666 1122.79917 NaN NaN NaN NaN NaN NaN NaN 177.26 1 172.39 171.89 172.89 -4.8739 0 0 0 0.22588 1 35274 35274 0 0 1 + 21793 24531 14288 14293 21600 21600 0.24268130209725314 ITIVILIILI 10 Unmodified _ITIVILIILI_ 0 0 0 REV__PTPRF|p.A1280T|1|0.37|ENSG00000142949|chr1:43606949-43606949|G/A|missense_variant REV__PTPRF|p.A1280T|1|0.37|ENSG00000142949|chr1:43606949-43606949|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21368408203125 3 375.273666 1122.79917 NaN NaN NaN NaN NaN NaN NaN 177.57 1 172.7 172.2 173.2 -4.8686 0 0 0 0.22588 1 35339 35339 0 0 1 + 21794 24531 14288 14293 21601 21601 0.24268130209725314 ITIWRIITY 9 Unmodified _ITIWRIITY_ 0 0 0 nc|ENSG00000103534|Q6UXY8-2|TMC5 nc|ENSG00000103534|Q6UXY8-2|TMC5 nc|ENSG00000103534|Q6UXY8-2|TMC5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2680053710938 2 589.850242 1177.68593 NaN NaN NaN NaN NaN NaN NaN 71.216 1 67.749 67.249 68.249 -3.467 0 0 0 0.19632 1 13496 13496 0.40827 0 1 21795 12264 14289 14294 21602 21602 0.10419454816519647 ITKKKKRRLA 10 Unmodified _ITKKKKRRLA_ 0 0 0 REV__nc|ENSG00000123901|Q9NYM4-2|GPR83 REV__nc|ENSG00000123901|Q9NYM4-2|GPR83 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 621.610107421875 2 621.430056 1240.84556 NaN NaN NaN NaN NaN NaN NaN 166.51 1 166.51 166.01 167.01 0 0 0 0 0.22588 1 33931 33931 0.40072 0 1 + 21796 15744 14290 14295 21603 21603 0.23477007884366685 ITKKRASH 8 Unmodified _ITKKRASH_ 0 0 0 ENSG00000124596|ENST00000424266|OARD1 ENSG00000124596|ENST00000424266|OARD1 ENSG00000124596|ENST00000424266|OARD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.19439697265625 3 314.194409 939.561398 NaN NaN NaN NaN NaN NaN NaN 63.422 1 60.165 59.665 60.665 -3.2567 0 0 0 0.21486 1 11901 11901 3.5965 0.8613 1 21797 3325 14291 14296 21604 21604 0.08920002119850778 ITKMFKVKE 9 Unmodified _ITKMFKVKE_ 0 0 0 REV__nc|ENSG00000143889|Q8WVV9-5|HNRNPLL REV__nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2226257324219 3 375.222977 1122.6471 NaN NaN NaN NaN NaN NaN NaN 106.25 1 102.16 101.66 102.66 -4.0913 0 0 0 0.23508 1 20431 20431 7.609 2.3121 1 + 21798 16757 14292 14297 21605 21605 0.09068406190499445 ITKSLLLIILF 11 Unmodified _ITKSLLLIILF_ 0 0 0 REV__ENST00000423082.1_1_1:111550392-111550686:-|nuORF REV__ENST00000423082.1_1_1:111550392-111550686:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24591064453125 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 40.13 1 37.641 37.141 38.141 -2.4896 0 0 0 0.22632 1 7175 7175 1.4551 1.4113 1 + 21799 21530 14293 14298 21606 21606 0.21658900267152603 ITKSLWVSH 9 Unmodified _ITKSLWVSH_ 0 0 0 REV__ENST00000476618.5_1_2:173940647-174074648:+|nuORF REV__ENST00000476618.5_1_2:173940647-174074648:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.0611572265625 3 357.537953 1069.59203 -0.42697 -0.00015266 0.31756 0.00011354 -0.10941 -3.9119E-05 357.5380027816914 63.622 0.51469 60.366 60.055 60.57 -3.2567 37 14 3 0 0 0 0.87497 1 11957 11957 4.897 4.4963 1 3277200 + 21800 22107 14294 14299 21607 21607 0.06001735714244205 ITKTSKKT 8 Unmodified _ITKTSKKT_ 0 0 0 REV__PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant REV__PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75250244140625 2 453.784567 905.554582 NaN NaN NaN NaN NaN NaN NaN 110.56 1 106.14 105.64 106.64 -4.4231 0 0 0 0.23749 1 21789 21789 0.0082765 0 1 + 21801 14088 14295 14300 21608 21608 0.09802644448609499 ITKTSRVLR 9 Unmodified _ITKTSRVLR_ 0 0 0 ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL ENSG00000138078|ENST00000409411|PREPL ENSG00000138078|ENST00000409411|PREPL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.0483093261719 3 358.564502 1072.67168 -0.11535 -4.136E-05 0.29961 0.00010743 0.18426 6.607E-05 358.56449047187425 51.172 0.35058 51.172 50.987 51.337 0 25 9 3 0 0 0 0.87609 1 9676 9676 2.2828 0 1 17282000 21802 4146 14296 14301 21609 21609 0.13824802388216995 ITKVTDSY 8 Unmodified _ITKVTDSY_ 0 0 0 nc|ENSG00000181634|O95150-2|TNFSF15;nc|ENSG00000181634|O95150-3|TNFSF15;ENSG00000181634|ENST00000374045|TNFSF15 nc|ENSG00000181634|O95150-2|TNFSF15 nc|ENSG00000181634|O95150-2|TNFSF15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2493591308594 2 463.745108 925.475663 0.034495 1.5997E-05 0.036115 1.6748E-05 0.07061 3.2745E-05 463.74503435030874 58.021 1.1276 54.77 54.113 55.241 -3.2517 94 31 4 0 0 0 0.60622 1 10785 10785 21.747 1.293 1 20153000 21803 12498 14297 14302 21610 21610 0.009943724236677554 ITKVTDSY 8 Unmodified _ITKVTDSY_ 0 0 0 nc|ENSG00000181634|O95150-2|TNFSF15;nc|ENSG00000181634|O95150-3|TNFSF15;ENSG00000181634|ENST00000374045|TNFSF15 nc|ENSG00000181634|O95150-2|TNFSF15 nc|ENSG00000181634|O95150-2|TNFSF15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2486572265625 2 463.745108 925.475663 0.072031 3.3404E-05 0.064231 2.9787E-05 0.13626 6.3191E-05 463.74505306808356 58.025 1.0852 54.82 54.179 55.264 -3.2052 92 30 4 0 0 0 8448 1 10846 10846 3.5871 0 1 18564000 21804 12498 14297 14302 21611 21611 0.009943724236677554 ITLILVLLLKH 11 Unmodified _ITLILVLLLKH_ 0 0 0 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 638.3878784179688 2 638.441766 1274.86898 NaN NaN NaN NaN NaN NaN NaN 169.68 1 164.75 164.25 165.25 -4.9295 0 0 0 0.23698 1 33517 33517 0.30703 0.30703 1 21805 26090 14298 14303 21612 21612 0.24254008878301647 ITLKMRKLIK 10 Unmodified _ITLKMRKLIK_ 0 0 0 nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A;CCDC88A|p.L1472Ffs*8|1|0.35|ENSG00000115355|chr2:55303124-55303125|-/A|frameshift_variant nc|ENSG00000115355|Q3V6T2-5|CCDC88A nc|ENSG00000115355|Q3V6T2-5|CCDC88A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7587280273438 2 622.417768 1242.82098 NaN NaN NaN NaN NaN NaN NaN 92.61 1 88.801 88.301 89.301 -3.8083 0 0 0 2.8426 1 17748 17748 0.0013812 0 1 21806 2849 14299 14304 21613 21613 0.2092861168662239 ITLSDDEKKM 10 Unmodified _ITLSDDEKKM_ 0 0 0 REV__nc|ENSG00000163531|O94856-12|NFASC REV__nc|ENSG00000163531|O94856-12|NFASC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2586669921875 2 590.299921 1178.58529 NaN NaN NaN NaN NaN NaN NaN 59.591 1 56.277 55.777 56.777 -3.3139 0 0 0 2.8426 1 11083 11083 6.6304 0.76223 1 + 21807 24130 14300 14305 21614 21614 0.003140099806842045 ITLYHSSNK 9 Unmodified _ITLYHSSNK_ 0 0 0 REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2864990234375 2 531.782556 1061.55056 0.079518 4.2286E-05 0.15016 7.9854E-05 0.22968 0.00012214 531.7824938875141 41.879 1.5123 39.273 38.664 40.176 -2.606 95 42 4 0 0 0 0.52396 1 7498 7498 18.146 0 1 2794200 + 21808 18430 14301 14306 21615 21615 0.022245549549097632 ITLYHSSNK 9 Unmodified _ITLYHSSNK_ 0 0 0 REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 531.782556 1061.55056 0.22316 0.00011867 -0.14369 -7.6412E-05 0.079467 4.2259E-05 531.782409007542 39.349 1.1813 39.349 38.783 39.964 0 0.04236 -0.00021777 NaN 18.146 74 33 3 NaN NaN NaN NaN 0 NaN NaN 0 3092300 + 21809 18430 14301 14306 0.022245549549097632 ITLYHSSNK 9 Unmodified _ITLYHSSNK_ 0 0 0 REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 531.782556 1061.55056 -0.11177 -5.9439E-05 0.30798 0.00016378 0.19621 0.00010434 531.782660475336 41.966 1.0742 39.247 38.729 39.803 -2.7191 -0.060272 0.00026261 NaN 18.146 68 30 3 NaN NaN NaN NaN 0 NaN NaN 0 3474400 + 21810 18430 14301 14306 0.022245549549097632 ITLYHSSNK 9 Unmodified _ITLYHSSNK_ 0 0 0 REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 531.782556 1061.55056 0.079518 4.2286E-05 0.15016 7.9854E-05 0.22968 0.00012214 531.7824938875141 41.879 1.5123 39.273 38.664 40.176 -2.606 -0.034126 9.4758E-05 NaN 18.146 95 42 4 NaN NaN NaN NaN 0 NaN NaN 0 2794200 + 21811 18430 14301 14306 0.022245549549097632 ITNNRFNKS 9 Unmodified _ITNNRFNKS_ 0 0 0 REV__ENST00000515140.1_3_4:68340585-68358532:-|nuORF REV__ENST00000515140.1_3_4:68340585-68358532:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.18865966796875 3 365.196478 1092.56761 NaN NaN NaN NaN NaN NaN NaN 56.394 1 56.394 55.894 56.894 0 0 0 0 0.19679 1 10771 10771 0.029283 0 1 + 21812 22568 14302 14307 21616 21616 0.025024755606864346 ITNNSELYQ 9 Unmodified _ITNNSELYQ_ 0 0 0 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2620239257812 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 70.687 1 70.687 70.187 71.187 0 0 0 0 0.0914 1 13691 13691 39.95 5.548 1 + 21813 25144 14303 14308 21617 21617 -0.028280455243020697 ITNQLWELY 9 Unmodified _ITNQLWELY_ 0 0 0 REV__tr|U7T3K1|U7T3K1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00306PE=4SV=1 REV__tr|U7T3K1|U7T3K1_FUSNURloB-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00306PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2689819335938 2 590.305864 1178.59717 NaN NaN NaN NaN NaN NaN NaN 132.78 1 128.14 127.64 128.64 -4.6399 0 0 0 0.19656 1 26178 26178 0.073264 0 1 + 21814 25366 14304 14309 21618 21618 0.015019947861901528 ITNRSPKF 8 Unmodified _ITNRSPKF_ 0 0 0 REV__CASR|p.S911Pfs*28|2|0.2|ENSG00000036828|chr3:122284680-122284680|C/-|frameshift_variant REV__CASR|p.S911Pfs*28|2|0.2|ENSG00000036828|chr3:122284680-122284680|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7745666503906 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 150.82 1 150.82 150.32 151.32 0 0 0 0 0.21486 1 30197 30197 9.3474 0 1 + 21815 13267 14305 14310 21619 21619 0.05220893508658264 ITNSVYSRF 9 Unmodified _ITNSVYSRF_ 0 0 0 nc|ENSG00000290445|Q5T2Q4|CCNYL2 nc|ENSG00000290445|Q5T2Q4|CCNYL2 nc|ENSG00000290445|Q5T2Q4|CCNYL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7825927734375 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 108.04 1 103.63 103.13 104.13 -4.4121 0 0 0 0.18966 1 20731 20731 0.87518 0 1 21816 12660 14306 14311 21620 21620 0.01120554954900399 ITPAPRNPP 9 Unmodified _ITPAPRNPP_ 0 0 0 ENST00000470037.1_1_1:26358781-26358883:+|nuORF ENST00000470037.1_1_1:26358781-26358883:+|nuORF ENST00000470037.1_1_1:26358781-26358883:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7752685546875 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 167.05 1 162.16 161.66 162.66 -4.8916 0 0 0 0.22251 1 32799 32799 16.942 1.0951 1 21817 10193 14307 14312 21621 21621 0.052208935086468955 ITPCNSPEMC 10 Unmodified _ITPCNSPEMC_ 0 0 0 REV__nc|ENSG00000100170|P13866-2|SLC5A1 REV__nc|ENSG00000100170|P13866-2|SLC5A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7877807617188 2 547.719395 1093.42424 0.021828 1.1955E-05 -3.0185 -0.0016533 -2.9966 -0.0016413 548.2173524470417 46.814 0.17802 43.872 43.79 43.968 -2.9421 6 4 2 0 0 0 1.1258 1 8508 8508 0.043787 0.040407 1 574910 + 21818 14672 14308 14313 21622 21622 -0.11873778928566026 ITPEEELSY 9 Unmodified _ITPEEELSY_ 0 0 0 ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant;ANKRD34B|p.V479Sfs*11|1|0.27|ENSG00000189127|chr5:80558585-80558586|-/T|frameshift_variant;ENSG00000189127|ENST00000338682|ANKRD34B ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2586669921875 2 540.758412 1079.50227 0.25656 0.00013874 1.5743 0.00085132 1.8309 0.00099006 540.7569995404325 127.97 0.44989 123.15 122.86 123.31 -4.817 16 12 2 0 0 0 0.55979 1 24513 24513 15.847 0 1 1379400 21819 162 14309 14314 21623 21623 -0.03429983475643894 ITPLSWQLSP 10 Unmodified _ITPLSWQLSP_ 0 0 0 REV__ENST00000360265.8_1_4:7763474-7763684:-|nuORF REV__ENST00000360265.8_1_4:7763474-7763684:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21142578125 3 381.213246 1140.61791 NaN NaN NaN NaN NaN NaN NaN 28.126 1 28.126 27.626 28.626 0 0 0 0 0.22588 1 4983 4983 7.4771 3.0709 1 + 21820 20862 14310 14315 21624 21624 0.053225851658453394 ITPPVLSSF 9 Unmodified _ITPPVLSSF_ 0 0 0 REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10 REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.232421875 2 480.773668 959.532783 0.18441 8.866E-05 0.12255 5.892E-05 0.30696 0.00014758 480.77353175966124 156.17 0.5954 150.89 150.54 151.14 -5.2854 25 16 2 0 0 0 0.40602 1 30279 30279 25.399 1.3787 1 2086600 + 21821 19823 14311 14316 21625 21625 0.05139839700052562 ITPPVLSSF 9 Unmodified _ITPPVLSSF_ 0 0 0 REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10 REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.773668 959.532783 0.17784 8.5499E-05 0.28869 0.00013879 0.46652 0.00022429 480.77359718909787 155.55 0.64325 150.77 150.41 151.05 -4.7791 -0.035521 0.00017611 NaN 25.399 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2212700 + 21822 19823 14311 14316 0.05139839700052562 ITPPVLSSF 9 Unmodified _ITPPVLSSF_ 0 0 0 REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10 REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.773668 959.532783 0.18441 8.866E-05 0.12255 5.892E-05 0.30696 0.00014758 480.77353175966124 156.17 0.5954 150.89 150.54 151.14 -5.2854 0.074835 1.6365E-05 NaN 25.399 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2086600 + 21823 19823 14311 14316 0.05139839700052562 ITPPVLSSF 9 Unmodified _ITPPVLSSF_ 0 0 0 REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10 REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.773668 959.532783 0.35226 0.00016936 -0.047176 -2.2681E-05 0.30508 0.00014668 480.7735125309236 156.02 0.59811 150.77 150.44 151.03 -5.2526 -0.039315 -0.00014684 NaN 25.399 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1425300 + 21824 19823 14311 14316 0.05139839700052562 ITPVVHGAY 9 Unmodified _ITPVVHGAY_ 0 0 0 REV__CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7657165527344 2 478.763635 955.512717 NaN NaN NaN NaN NaN NaN NaN 66.113 1 66.113 65.613 66.613 0 0 0 0 0.23508 1 12762 12762 8.5933 1.8701 1 + 21825 13440;18462 14312 14317 21626 21626 0.03318088760090632 ITPWITSYI 9 Unmodified _ITPWITSYI_ 0 0 0 REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2 REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7698974609375 2 547.30005 1092.58555 0.33214 0.00018178 -3.1885 -0.0017451 -2.8563 -0.0015633 547.2984439821395 139.29 0.55595 134.45 134.22 134.77 -4.8492 19 15 2 0 0 0 0.22334 1 26866 26866 36.044 3.7387 1 1280100 + 21826 16143 14313 14318 21627 21627 0.042957977628248045 ITQARDKSY 9 Unmodified _ITQARDKSY_ 0 0 0 REEP2|p.E105K|1|0.11|ENSG00000132563|chr5:138444763-138444763|G/A|missense_variant;ENST00000510467.5_1_5:137774897-137780649:+|nuORF;ENST00000507635.5_1_5:137780026-137781437:+|nuORF;nc|ENSG00000132563|Q9BRK0|REEP2;ENSG00000132563|ENST00000378339|REEP2 REEP2|p.E105K|1|0.11|ENSG00000132563|chr5:138444763-138444763|G/A|missense_variant REEP2|p.E105K|1|0.11|ENSG00000132563|chr5:138444763-138444763|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2849731445312 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 64.831 1 64.831 64.331 65.331 0 0 0 0 0.20294 1 12484 12484 22.736 4.6013 1 21827 3743 14314 14319 21628 21628 0.019316534665676954 ITQEIAMIY 9 Unmodified _ITQEIAMIY_ 0 0 0 REV__ENSG00000125730|ENST00000245907|C3 REV__ENSG00000125730|ENST00000245907|C3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2830810546875 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 121.47 1 116.92 116.42 117.42 -4.5476 0 0 0 0.21065 1 23945 23945 20.454 4.6854 1 + 21828 15825 14315 14320 21629 21629 0.015478476485213832 ITQGDLVAV 9 Unmodified _ITQGDLVAV_ 0 0 0 ACO1|p.P659Lfs*4|1|0.24|ENSG00000122729|chr9:32434574-32434574|C/-|frameshift_variant;ENSG00000122729|ENST00000309951|ACO1 ACO1|p.P659Lfs*4|1|0.24|ENSG00000122729|chr9:32434574-32434574|C/-|frameshift_variant ACO1|p.P659Lfs*4|1|0.24|ENSG00000122729|chr9:32434574-32434574|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2387390136719 2 458.260925 914.507297 -0.12206 -5.5936E-05 0.39586 0.00018141 0.2738 0.00012547 458.26099629071985 84.208 0.85638 80.544 79.992 80.849 -3.6641 35 24 2 0 0 0 0.25702 1 16397 16397 34.102 7.2188 1 1464700 21829 34 14316 14321 21630 21630 0.04662365177625816 ITQKDIYFEVK 11 Unmodified _ITQKDIYFEVK_ 0 0 0 REV__ENST00000340413.6_1_6:150047065-150047122:-|nuORF REV__ENST00000340413.6_1_6:150047065-150047122:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 692.3248901367188 2 692.37956 1382.74457 NaN NaN NaN NaN NaN NaN NaN 172.71 1 172.71 172.21 173.21 0 0 0 0 0.23429 1 35669 35669 4.897 0.36815 1 + 21830 20704 14317 14322 21631 21631 0.06850466600326399 ITQVTSVFRLP 11 Unmodified _ITQVTSVFRLP_ 0 0 0 ENSG00000196184|ENST00000423932|OR10J1;nc|ENSG00000196184|P30954|OR10J1 ENSG00000196184|ENST00000423932|OR10J1 ENSG00000196184|ENST00000423932|OR10J1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7726440429688 2 630.869163 1259.72377 NaN NaN NaN NaN NaN NaN NaN 99.694 1 95.738 95.238 96.238 -3.9564 0 0 0 0.23429 1 19145 19145 4.897 0.70751 1 21831 7240 14318 14323 21632 21632 0.10429921011314036 ITRKCLYIAY 10 Unmodified _ITRKCLYIAY_ 0 0 0 REV__RGS6|p.M140I|1|0.29|ENSG00000182732|chr14:72465783-72465783|G/T|missense_variant REV__RGS6|p.M140I|1|0.29|ENSG00000182732|chr14:72465783-72465783|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7529296875 2 622.347009 1242.67946 NaN NaN NaN NaN NaN NaN NaN 95.865 1 91.674 91.174 92.174 -4.1911 0 0 0 0.22588 1 18298 18298 7.2892 0 1 + 21832 24564 14319 14324 21633 21633 0.06783193593491887 ITSEELSAL 9 Unmodified _ITSEELSAL_ 0 0 0 MTMR14|p.F405L|1|0.11|ENSG00000163719|chr3:9687871-9687871|C/A|missense_variant MTMR14|p.F405L|1|0.11|ENSG00000163719|chr3:9687871-9687871|C/A|missense_variant MTMR14|p.F405L|1|0.11|ENSG00000163719|chr3:9687871-9687871|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7652587890625 2 481.755672 961.496792 0.16114 7.763E-05 -0.17796 -8.5736E-05 -0.016825 -8.1053E-06 481.7554903864676 114.13 0.52159 109.57 109.35 109.87 -4.555 20 14 2 0 0 0 0.38188 1 21944 21944 26.884 0 1 856800 21833 12171 14320 14325 21634 21634 0.014503377325127076 ITSIFLGV 8 Unmodified _ITSIFLGV_ 0 0 0 nc|ENSG00000114529|Q5BVD1-3|TTMP;ENST00000497610.1_1_3:111805290-111828461:+|nuORF;nc|ENSG00000114529|Q5BVD1-2|TTMP;ENSG00000114529|ENST00000264848|C3orf52 nc|ENSG00000114529|Q5BVD1-3|TTMP nc|ENSG00000114529|Q5BVD1-3|TTMP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2551574707031 2 425.257654 848.500755 NaN NaN NaN NaN NaN NaN NaN 12.306 1 12.306 11.806 12.806 0 0 0 0 0.21486 1 1705 1705 2.3027 0 1 21834 12290 14321 14326 21635 21635 0.07044472016900727 ITSLKGKRK 9 Unmodified _ITSLKGKRK_ 0 0 0 REV__nc|ENSG00000112419|O75167-5|PHACTR2 REV__nc|ENSG00000112419|O75167-5|PHACTR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 515.8412475585938 2 515.840208 1029.66586 NaN NaN NaN NaN NaN NaN NaN 171.91 1 167.04 166.54 167.54 -4.873 0 0 0 0.19638 1 34086 34086 0.20686 0.20348 1 + 21835 15299 14322 14327 21636 21636 0.1522170387654569 ITSNTYFGY 9 Unmodified _ITSNTYFGY_ 0 0 0 REV__nc|ENSG00000103534|Q6UXY8-4|TMC5 REV__nc|ENSG00000103534|Q6UXY8-4|TMC5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2868041992188 2 533.248015 1064.48148 0.25019 0.00013341 -3.0054 -0.0016026 -2.7552 -0.0014692 533.7474894434403 159.67 0.10875 154.87 154.8 154.91 -4.7952 4 2 2 0 0 0 0.8204 1 31738 31738 4.756 0 1 904260 + 21836 14890 14323 14328 21637 21637 -0.0481852906466429 ITSSTSILSA 10 Unmodified _ITSSTSILSA_ 0 0 0 REV__ENST00000471498.5_1_1:28324859-28384546:-|nuORF REV__ENST00000471498.5_1_1:28324859-28384546:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2685852050781 2 490.268947 978.523341 NaN NaN NaN NaN NaN NaN NaN 172.09 1 167.19 166.69 167.69 -4.8977 0 0 0 0.22588 1 34120 34120 10.074 0 1 + 21837 17326 14324 14329 21638 21638 0.03322026623857255 ITSVTSSVVS 10 Unmodified _ITSVTSSVVS_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25246445-25268811:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26727294921875 2 490.268947 978.523341 NaN NaN NaN NaN NaN NaN NaN 43.845 1 41.098 40.598 41.598 -2.7475 0 0 0 2.8426 1 7929 7929 0.51642 0 1 21838 4703 14325 14330 21639 21639 0.033220266238686236 ITSVTSSVVS 10 Unmodified _ITSVTSSVVS_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25246445-25268811:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26727294921875 2 490.268947 978.523341 NaN NaN NaN NaN NaN NaN NaN 43.872 1 41.125 40.625 41.625 -2.7475 0 0 0 0.12557 1 7934 7934 52.268 14.294 1 21839 4703 14325 14330 21640 21640 0.033220266238686236 ITTSLNDDWS 10 Unmodified _ITTSLNDDWS_ 0 0 0 REV__SLC15A1|p.A54T|1|0.37|ENSG00000088386|chr13:98726208-98726208|C/T|missense_variant REV__SLC15A1|p.A54T|1|0.37|ENSG00000088386|chr13:98726208-98726208|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3382568359375 2 576.264393 1150.51423 NaN NaN NaN NaN NaN NaN NaN 108.16 1 104.02 103.52 104.52 -4.135 0 0 0 0.22573 1 20808 20808 15.248 2.206 1 + 21840 24624 14326 14331 21641 21641 -0.05500366732485418 ITTSYLIMIEP 11 Unmodified _ITTSYLIMIEP_ 0 0 0 ENST00000568396.2_1_16:67881454-67899118:+|nuORF;ENST00000567105.5_3_16:67881320-67899118:+|nuORF ENST00000568396.2_1_16:67881454-67899118:+|nuORF ENST00000568396.2_1_16:67881454-67899118:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 640.8850708007812 2 640.843964 1279.67338 NaN NaN NaN NaN NaN NaN NaN 173.44 1 173.44 172.94 173.94 0 0 0 0 0.22632 1 35867 35867 0.172 0 1 21841 11376 14327 14332 21642 21642 0.044726305713084 ITVRQGPTG 9 Unmodified _ITVRQGPTG_ 0 0 0 REV__nc|ENSG00000211651|P01699|IGLV1-44 REV__nc|ENSG00000211651|P01699|IGLV1-44 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2400207519531 2 464.764166 927.513779 -0.46399 -0.00021565 0.36438 0.00016935 -0.099614 -4.6297E-05 464.7643181966201 37.05 0.44168 34.581 34.331 34.772 -2.4688 28 12 3 0 0 0 0.79204 1 6816 6816 11.64 7.3111 1 848200 + 21842 24246 14328 14333 21643 21643 0.04712303128997064 ITVSKEAPA 9 Unmodified _ITVSKEAPA_ 0 0 0 ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23931884765625 2 458.260925 914.507297 0.56395 0.00025844 -0.42284 -0.00019377 0.14112 6.4669E-05 458.2606240569406 45.3 0.45992 45.3 45.023 45.483 0 25 12 3 0 0 0 0.47479 1 8501 8501 24.021 0 1 2307300 21843 7302 14329 14334 21644 21644 0.04662365177614447 ITWARVEDP 9 Unmodified _ITWARVEDP_ 0 0 0 REV__chr2:174079086-174081152|156|15.41|0.92|4.07|-|0|None,OLA1|1 REV__chr2:174079086-174081152|156|15.41|0.92|4.07|-|0|None,OLA1|1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7824096679688 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 49.73 1 49.73 49.23 50.23 0 0 0 0 0.21469 1 9406 9406 19.257 0 1 + 21844 13423 14330 14335 21645 21645 0.011205549548776617 ITWGMLKKT 9 Unmodified _ITWGMLKKT_ 0 0 0 nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1 nc|ENSG00000134283|Q8NEY8|PPHLN1 nc|ENSG00000134283|Q8NEY8|PPHLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2107849121094 3 359.875689 1076.60524 0.16812 6.0501E-05 3.1841 0.0011459 3.3522 0.0012064 359.8766964456404 21.238 0.10465 19.763 19.701 19.806 -1.4742 4 2 2 0 0 0 0.45972 1 3592 3592 8.1555 7.7473 1 350280 21845 12334 14331 14336 21646 21646 0.06999850501961191 ITYFPKRYR 9 Unmodified _ITYFPKRYR_ 0 0 0 REV__nc|ENSG849|O42043|ERVK-18_env REV__nc|ENSG849|O42043|ERVK-18_env MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7794189453125 2 622.35094 1242.68733 NaN NaN NaN NaN NaN NaN NaN 101.47 1 101.47 100.97 101.97 0 0 0 0 0.23508 1 19917 19917 11.64 0.81637 1 + 21846 24334 14332 14337 21647 21647 0.07569088905256649 ITYLCRNRL 9 Unmodified _ITYLCRNRL_ 0 0 0 ENST00000357429.10_1_7:1036666-1036777:-|nuORF ENST00000357429.10_1_7:1036666-1036777:-|nuORF ENST00000357429.10_1_7:1036666-1036777:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.322998046875 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 77.054 1 73.288 72.788 73.788 -3.7664 0 0 0 0.19684 1 14597 14597 0.029283 0.016017 1 21847 8980 14333 14338 21648 21648 0.058808696194319054 ITYTESDK 8 Unmodified _ITYTESDK_ 0 0 0 REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73193359375 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 94.681 1 94.681 94.181 95.181 0 0 0 0 0.22699 1 18544 18544 0.62683 0 1 + 21848 20369 14334 14339 21649 21649 -0.029665218186096354 ITYTESDK 8 Unmodified _ITYTESDK_ 0 0 0 REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73187255859375 2 478.732197 955.449842 -0.2494 -0.00011939 1.0838 0.00051886 0.83443 0.00039947 478.7326417747176 105.35 1.4033 101.08 100.18 101.59 -4.2638 66 39 2 0 0 0 0.49114 1 20569 20569 28.487 1.6032 1 1897600 + 21849 20369 14334 14339 21650 21650 -0.029665218186096354 ITYYLQTY 8 Unmodified _ITYYLQTY_ 0 0 0 PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4;nc|ENSG00000244694|Q6ZW05-2|PTCHD4 PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2849731445312 2 532.768583 1063.52261 0.08626 4.5957E-05 2.2 0.0011721 2.2862 0.001218 532.7696847299757 96.746 1.661 96.746 96.149 97.81 0 113 47 4 0 0 0 0.23433 1 18952 18952 42.095 13.013 1 19232000 21850 7885 14335 14340 21651 21651 -0.006607680251818238 ITYYLQTY 8 Unmodified _ITYYLQTY_ 0 0 0 PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4;nc|ENSG00000244694|Q6ZW05-2|PTCHD4 PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2684326171875 2 532.768583 1063.52261 0.090831 4.8392E-05 1.9626 0.0010456 2.0534 0.001094 532.76989652839 101.07 1.6981 96.91 95.975 97.673 -4.1594 122 48 4 0 0 0 0.27274 2 19857 19857;19869 38.151 6.0342 1 20176000 21851 7885 14335 14340 21652;21653 21652 -0.006607680251818238 ITYYLQTY 8 Unmodified _ITYYLQTY_ 0 0 0 PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4;nc|ENSG00000244694|Q6ZW05-2|PTCHD4 PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2685546875 2 532.768583 1063.52261 0.69094 0.00036811 1.3976 0.00074458 2.0885 0.0011127 532.7693638973252 101.19 1.2314 96.895 96.123 97.354 -4.297 105 35 5 0 0 0 0.27274 1 19392 19392 38.151 3.2191 1 19394000 21852 7885 14335 14340 21654 21654 -0.006607680251818238 IVAAQNWN 8 Unmodified _IVAAQNWN_ 0 0 0 REV__ENSG00000182197|ENST00000378204|EXT1 REV__ENSG00000182197|ENST00000378204|EXT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2243957519531 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 62 1 58.76 58.26 59.26 -3.2395 0 0 0 0.21323 1 11616 11616 14.582 2.0501 1 + 21853 18765 14336 14341 21655 21655 0.00036345066178000707 IVAKELETY 9 Unmodified _IVAKELETY_ 0 0 0 REV__ENST00000474991.1_1_1:153580188-153585458:-|nuORF REV__ENST00000474991.1_1_1:153580188-153585458:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26904296875 2 533.294965 1064.57538 -0.11427 -6.0938E-05 0.38387 0.00020471 0.2696 0.00014377 533.2951937500773 94.765 0.48595 94.765 94.522 95.008 0 22 13 2 0 0 0 0.34815 1 18593 18593 1.2148 0 1 1668200 + 21854 19161 14337 14342 21656 21656 0.04567190037619184 IVAKLLFG 8 Unmodified _IVAKLLFG_ 0 0 0 REV__nc|ENSG00000108528|Q02978-2|SLC25A11 REV__nc|ENSG00000108528|Q02978-2|SLC25A11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.0933532714844 2 430.783839 859.553125 0.056616 2.4389E-05 0.078781 3.3938E-05 0.1354 5.8327E-05 430.7838364128684 32.177 0.39354 29.946 29.724 30.117 -2.2305 14 10 2 0 0 0 1.028 1 5857 5857 0 0 1 687620 + 21855 15127 14338 14343 21657 21657 0.11773055150536038 IVAKLLFG 8 Unmodified _IVAKLLFG_ 0 0 0 REV__nc|ENSG00000108528|Q02978-2|SLC25A11 REV__nc|ENSG00000108528|Q02978-2|SLC25A11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 430.783839 859.553125 0.16423 7.0746E-05 0.36695 0.00015808 0.53118 0.00022882 430.783896872975 29.773 0.48581 29.773 29.469 29.955 0 -0.086603 0.00015134 NaN 0 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 945340 + 21856 15127 14338 14343 0.11773055150536038 IVALAYAPYD 10 Unmodified _IVALAYAPYD_ 0 0 0 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7694091796875 2 548.289682 1094.56481 0.084093 4.6108E-05 3.9091 0.0021433 3.9932 0.0021894 548.7944738990237 135.88 0.21205 130.99 130.82 131.03 -4.8951 6 5 2 0 0 0 0.61278 1 26110 26110 14.838 0 1 751670 + 21857 17617 14339 14344 21658 21658 0.02131207383195033 IVAPKWEN 8 Unmodified _IVAPKWEN_ 0 0 0 REV__CCDC66|p.D245V|1|0.25|ENSG00000180376|chr3:56566973-56566973|A/T|missense_variant REV__CCDC66|p.D245V|1|0.25|ENSG00000180376|chr3:56566973-56566973|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7440185546875 2 478.763635 955.512717 NaN NaN NaN NaN NaN NaN NaN 21.887 1 20.166 19.666 20.666 -1.7211 0 0 0 0.20761 1 3447 3447 19.257 1.122 1 + 21858 13301 14340 14345 21659 21659 0.03318088760090632 IVAQKPATK 9 Unmodified _IVAQKPATK_ 0 0 0 ENSG00000188800|ENST00000372766|TMCO2 ENSG00000188800|ENST00000372766|TMCO2 ENSG00000188800|ENST00000372766|TMCO2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.20037841796875 3 319.202682 954.586216 NaN NaN NaN NaN NaN NaN NaN 88.564 1 88.564 88.064 89.064 0 0 0 0 0.23508 1 17285 17285 2.4985 1.0166 1 21859 7195 14341 14346 21660 21660 0.10710637202566886 IVATGIKPNT 10 Unmodified _IVATGIKPNT_ 0 0 0 tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1 tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1 tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.73480224609375 2 507.303124 1012.5917 0.013998 7.1013E-06 -0.60603 -0.00030744 -0.59204 -0.00030034 507.30293740497297 116.44 0.56142 111.95 111.65 112.21 -4.486 23 15 2 0 0 0 1.0684 1 22944 22944 0.84494 0 1 2469700 21860 26148 14342 14347 21661 21661 0.08590315994376851 IVCPQVNT 8 Unmodified _IVCPQVNT_ 0 0 0 REV__ENSG00000180008|ENST00000555846|SOCS4 REV__ENSG00000180008|ENST00000555846|SOCS4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.229248046875 2 437.228571 872.442588 NaN NaN NaN NaN NaN NaN NaN 41.78 1 39.145 38.645 39.645 -2.6348 0 0 0 0.22684 1 7807 7807 0.25148 0 1 + 21861 18672 14343 14348 21662 21662 0.0012646709996033678 IVCPQVNT 8 Unmodified _IVCPQVNT_ 0 0 0 REV__ENSG00000180008|ENST00000555846|SOCS4 REV__ENSG00000180008|ENST00000555846|SOCS4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2294006347656 2 437.228571 872.442588 NaN NaN NaN NaN NaN NaN NaN 41.44 1 38.789 38.289 39.289 -2.651 0 0 0 0.22636 1 7444 7444 0.25148 0 1 + 21862 18672 14343 14348 21663 21663 0.0012646709996033678 IVDCLTEMY 9 Unmodified _IVDCLTEMY_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF ENSG00000114374|ENST00000338981|USP9Y ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77685546875 2 543.745936 1085.47732 0.66653 0.00036242 -0.031407 -1.7078E-05 0.63512 0.00034534 543.7458848224765 47.88 0.52721 47.88 47.612 48.139 0 33 14 3 0 0 0 0.60805 1 8982 8982 12.532 0 1 3939400 21863 2786 14344 14349 21664 21664 -0.06200077874245835 IVDESNVKY 9 Unmodified _IVDESNVKY_ 0 0 0 ENSG00000188522|ENST00000388995|FAM83G;ENST00000399096.2_1_17:18882860-18907015:-|nuORF;FAM83G|p.Q440Sfs*5|1|0.44|ENSG00000188522|chr17:18978348-18978348|G/-|frameshift_variant ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2701416015625 2 533.774396 1065.53424 -0.0018946 -1.0113E-06 -0.58279 -0.00031108 -0.58469 -0.00031209 533.7740299557536 51.828 0.58488 48.777 48.453 49.038 -3.0517 23 16 2 0 0 0 0.76312 1 9515 9515 11.495 0 1 1287900 21864 7172 14345 14350 21665 21665 0.004094289981594557 IVDESNVKY 9 Unmodified _IVDESNVKY_ 0 0 0 ENSG00000188522|ENST00000388995|FAM83G;ENST00000399096.2_1_17:18882860-18907015:-|nuORF;FAM83G|p.Q440Sfs*5|1|0.44|ENSG00000188522|chr17:18978348-18978348|G/-|frameshift_variant ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.774396 1065.53424 0.40773 0.00021764 -0.63492 -0.0003389 -0.22719 -0.00012127 533.7737358985534 48.544 0.70652 48.544 48.244 48.95 0 -0.17678 -0.0003384 NaN 16.149 29 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1742900 21865 7172 14345 14350 0.004094289981594557 IVDKPAEF 8 Unmodified _IVDKPAEF_ 0 0 0 FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.C682Y|1|0.2|ENSG00000128591|chr7:128841491-128841491|G/A|missense_variant;FLNC|p.A1081Rfs*17|1|0.11|ENSG00000128591|chr7:128844701-128844701|C/-|frameshift_variant;FLNC|p.R1426Gfs*12|1|0.33|ENSG00000128591|chr7:128846887-128846887|G/-|frameshift_variant;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2390441894531 2 459.750193 917.485833 -0.07961 -3.6601E-05 0.55135 0.00025348 0.47174 0.00021688 459.750306184144 61.064 0.73106 61.064 60.732 61.463 0 48 20 3 0 0 0 0.042072 1 11691 11691 88.954 35.378 1 4498100 21866 3531 14346 14351 21666 21666 0.023789801489101592 IVDKPAEF 8 Unmodified _IVDKPAEF_ 0 0 0 FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.C682Y|1|0.2|ENSG00000128591|chr7:128841491-128841491|G/A|missense_variant;FLNC|p.A1081Rfs*17|1|0.11|ENSG00000128591|chr7:128844701-128844701|C/-|frameshift_variant;FLNC|p.R1426Gfs*12|1|0.33|ENSG00000128591|chr7:128846887-128846887|G/-|frameshift_variant;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2401428222656 2 459.750193 917.485833 -0.047386 -2.1786E-05 0.66111 0.00030394 0.61372 0.00028216 459.7504861892924 64.052 0.774 61.055 60.661 61.435 -2.9975 44 21 3 0 0 0 0.24385 1 12414 12414 68.081 52.234 1 3002900 21867 3531 14346 14351 21667 21667 0.023789801489101592 IVDKPAEF 8 Unmodified _IVDKPAEF_ 0 0 0 FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.C682Y|1|0.2|ENSG00000128591|chr7:128841491-128841491|G/A|missense_variant;FLNC|p.A1081Rfs*17|1|0.11|ENSG00000128591|chr7:128844701-128844701|C/-|frameshift_variant;FLNC|p.R1426Gfs*12|1|0.33|ENSG00000128591|chr7:128846887-128846887|G/-|frameshift_variant;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2381896972656 2 459.750193 917.485833 0.15348 7.056E-05 0.51856 0.00023841 0.67204 0.00030897 459.75033034832217 64.499 0.80709 61.04 60.698 61.505 -3.4581 46 22 3 0 0 0 0.24385 1 12037 12037 68.081 22.06 1 2779000 21868 3531 14346 14351 21668 21668 0.023789801489101592 IVDKPAEF 8 Unmodified _IVDKPAEF_ 0 0 0 FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC;FLNC|p.C682Y|1|0.2|ENSG00000128591|chr7:128841491-128841491|G/A|missense_variant;FLNC|p.A1081Rfs*17|1|0.11|ENSG00000128591|chr7:128844701-128844701|C/-|frameshift_variant;FLNC|p.R1426Gfs*12|1|0.33|ENSG00000128591|chr7:128846887-128846887|G/-|frameshift_variant;FLNC|p.V1896Wfs*57|1|0.04|ENSG00000128591|chr7:128851472-128851472|G/-|frameshift_variant FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2388610839844 2 459.750193 917.485833 0.27904 0.00012829 0.54757 0.00025174 0.82661 0.00038003 459.75033087505125 64.273 0.70025 61.017 60.677 61.377 -3.2567 49 19 3 0 0 0 0.15175 1 12061 12061 88.954 42.933 1 2692600 21869 3531 14346 14351 21669 21669 0.023789801489101592 IVDPKSIC 8 Unmodified _IVDPKSIC_ 0 0 0 REV__nc|ENSG00000197016|Q6ECI4-2|ZNF470 REV__nc|ENSG00000197016|Q6ECI4-2|ZNF470 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2355651855469 2 437.738771 873.462989 0.064528 2.8246E-05 -0.37638 -0.00016476 -0.31185 -0.00013651 437.7386073702713 75.762 0.31325 72.128 71.891 72.205 -3.6337 11 8 2 0 0 0 1.0011 1 14400 14400 7.9102 0 1 713960 + 21870 19297 14347 14352 21670 21670 0.02119637759778925 IVDSKPNGV 9 Unmodified _IVDSKPNGV_ 0 0 0 ENSG00000113716|ENST00000502717|HMGXB3 ENSG00000113716|ENST00000502717|HMGXB3 ENSG00000113716|ENST00000502717|HMGXB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.246826171875 2 464.758549 927.502546 0.68173 0.00031684 -1.0212 -0.00047461 -0.33948 -0.00015778 464.7580879058476 28.658 0.41036 26.702 26.468 26.878 -1.9561 19 11 2 0 0 0 0.2219 1 5141 5141 36.127 3.8215 1 1401300 21871 2759 14348 14353 21671 21671 0.03589481034862274 IVDTGEFKSA 10 Unmodified _IVDTGEFKSA_ 0 0 0 REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1 REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27099609375 2 533.774396 1065.53424 -0.083482 -4.456E-05 0.26271 0.00014023 0.17923 9.5668E-05 533.7744346012477 51.607 0.51123 48.725 48.493 49.004 -2.8824 28 14 3 0 0 0 0.83271 1 9782 9782 16.149 0 1 1522400 + 21872 25235 14349 14354 21672 21672 0.004094289981594557 IVEADTPGI 9 Unmodified _IVEADTPGI_ 0 0 0 ENST00000526129.5_1_1:76198579-76227103:+|nuORF;ENSG00000117054|ENST00000370841|ACADM;nc|ENSG00000117054|P11310-2|ACADM;ENST00000534334.5_1_1:76200478-76220620:+|nuORF ENST00000526129.5_1_1:76198579-76227103:+|nuORF ENST00000526129.5_1_1:76198579-76227103:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23834228515625 2 457.745108 913.475663 0.25463 0.00011656 -0.078548 -3.5955E-05 0.17608 8.0602E-05 457.74496102563955 113.5 1.042 113.5 112.97 114.01 0 50 29 2 0 0 0 0.13081 1 22328 22328 46.921 2.5139 1 1951700 21873 2972 14350 14355 21673 21673 0.015463724236610688 IVEFTAWIDG 10 Unmodified _IVEFTAWIDG_ 0 0 0 REV__ENSG00000047365|ENST00000303965|ARAP2 REV__ENSG00000047365|ENST00000303965|ARAP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3278198242188 2 575.792589 1149.57063 0.32339 0.0001862 -0.68652 -0.00039529 -0.36313 -0.00020909 575.7923037888609 127.04 0.70816 122.25 121.92 122.63 -4.7958 38 19 3 0 0 0 0.57735 1 24424 24424 20.454 0.039092 1 6082800 + 21874 14062 14351 14356 21674 21674 0.0018230589482755022 IVENIELK 8 Unmodified _IVENIELK_ 0 0 0 VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant;nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72406005859375 2 479.2844 956.554247 0.34548 0.00016558 -0.099234 -4.7561E-05 0.24625 0.00011802 479.2843110525972 151.48 0.63173 146.3 146.03 146.66 -5.1759 39 17 3 0 0 0 0.78482 1 29329 29329 19.257 0 1 3381100 21875 1231 14352 14357 21675 21675 0.07423224728768218 IVEQYFWWMMH 11 Unmodified _IVEQYFWWMMH_ 0 0 0 REV__ENST00000497113.1_1_1:8025465-8030966:+|nuORF REV__ENST00000497113.1_1_1:8025465-8030966:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.688720703125 3 523.905431 1568.69446 NaN NaN NaN NaN NaN NaN NaN 106.97 1 102.84 102.34 103.34 -4.135 0 0 0 0.22632 1 20568 20568 0.00056442 0 1 + 21876 22398 14353 14358 21676 21676 -0.0671368260084364 IVEQYFWWMMH 11 Unmodified _IVEQYFWWMMH_ 0 0 0 REV__ENST00000497113.1_1_1:8025465-8030966:+|nuORF REV__ENST00000497113.1_1_1:8025465-8030966:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.688720703125 3 523.905431 1568.69446 NaN NaN NaN NaN NaN NaN NaN 106.99 1 102.86 102.36 103.36 -4.135 0 0 0 0.23698 1 20572 20572 0.50596 0.051438 1 + 21877 22398 14353 14358 21677 21677 -0.0671368260084364 IVFLAFKKI 9 Unmodified _IVFLAFKKI_ 0 0 0 ENST00000465541.1_1_13:51524391-51530607:+|nuORF ENST00000465541.1_1_13:51524391-51530607:+|nuORF ENST00000465541.1_1_13:51524391-51530607:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 3 360.238956 1077.69504 NaN NaN NaN NaN NaN NaN NaN 132.41 1 127.77 127.27 128.27 -4.6399 0 0 0 0.23508 1 26100 26100 0.26902 0 1 21878 10120 14354 14359 21678 21678 0.15929848172845595 IVGILLVPQSI 11 Unmodified _IVGILLVPQSI_ 0 0 0 ENSG00000155850|ENST00000286298|SLC26A2 ENSG00000155850|ENST00000286298|SLC26A2 ENSG00000155850|ENST00000286298|SLC26A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3341064453125 2 576.373549 1150.73255 NaN NaN NaN NaN NaN NaN NaN 77.668 1 77.668 77.168 78.168 0 0 0 0 0.23087 1 15106 15106 7.609 2.3121 1 21879 5066 14355 14360 21679 21679 0.1632089464778801 IVHDIYQPLY 10 Unmodified _IVHDIYQPLY_ 0 0 0 REV__ENST00000591524.1_1_18:54424563-54448991:+|nuORF REV__ENST00000591524.1_1_18:54424563-54448991:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.751708984375 2 630.834788 1259.65502 NaN NaN NaN NaN NaN NaN NaN 113.04 1 108.51 108.01 109.01 -4.5259 0 0 0 0.22588 1 21699 21699 7.2892 1.9923 1 + 21880 14567 14356 14361 21680 21680 0.03558256711630747 IVHEKFESY 9 Unmodified _IVHEKFESY_ 0 0 0 REV__tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1 REV__tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3255615234375 2 576.290214 1150.56587 NaN NaN NaN NaN NaN NaN NaN 134.64 1 129.82 129.32 130.32 -4.8175 0 0 0 0.16473 1 25921 25921 2.6312 1.4164 1 + 21881 25207 14357 14362 21681 21681 -0.0033857824791994062 IVIVLPIIW 9 Unmodified _IVIVLPIIW_ 0 0 0 REV__sp|F5H9T4|UL09_HCMVMMembraneglycoproteinUL9OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL9PE=3SV=1 REV__sp|F5H9T4|UL09_HCMVMMembraneglycoproteinUL9OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL9PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.268798828125 2 533.357171 1064.69979 NaN NaN NaN NaN NaN NaN NaN 156.89 1 151.62 151.12 152.12 -5.2712 0 0 0 0.19624 1 30434 30434 0.073264 0 1 + 21882 24674 14358 14363 21682 21682 0.17002732315609137 IVKDATLD 8 Unmodified _IVKDATLD_ 0 0 0 REV__tr|U7STT2|U7STT2_FUSNUN-acyl-D-amino-aciddeacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01560PE=4SV=1 REV__tr|U7STT2|U7STT2_FUSNUN-acyl-D-amino-aciddeacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01560PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2212219238281 2 437.74765 873.480748 0.47507 0.00020796 0.41934 0.00018357 0.89441 0.00039152 437.74801509782475 109.83 0.66959 105.64 105.3 105.97 -4.1826 27 18 2 0 0 0 0.95515 1 21137 21137 21.747 5.8995 1 1471400 + 21883 25121 14359 14364 21683 21683 0.03894676286279264 IVKGRLML 8 Unmodified _IVKGRLML_ 0 0 0 REV__ENST00000314888.9_1_9:35716439-35716499:-|nuORF REV__ENST00000314888.9_1_9:35716439-35716499:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2454833984375 2 465.301873 928.589193 0.048323 2.2485E-05 0.24049 0.0001119 0.28881 0.00013438 465.3018127346331 126.22 0.63557 121.63 121.29 121.93 -4.5984 24 17 2 0 0 0 0.96284 1 24940 24940 13.508 4.1604 1 1567800 + 21884 20514 14360 14365 21684 21684 0.12204189055705683 IVKKLPKKK 9 Unmodified _IVKKLPKKK_ 0 0 0 REV__nc|ENSG00000005175|Q9H6T3-2|RPAP3 REV__nc|ENSG00000005175|Q9H6T3-2|RPAP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2792358398438 2 541.394619 1080.77469 NaN NaN NaN NaN NaN NaN NaN 166.77 1 161.98 161.48 162.48 -4.7898 0 0 0 0.23508 1 33547 33547 2.0598 0 1 + 21885 23924 14361 14366 21685 21685 0.23752914846818385 IVKKRTKKFI 10 Unmodified _IVKKRTKKFI_ 0 0 0 ENSG00000144713|ENST00000429711|RPL32;ENST00000510078.5_1_3:129115194-129117890:-|nuORF;ENST00000506593.1_1_3:129115194-129118308:-|nuORF;ENST00000452606.2_1_3:12880846-12881736:-|nuORF;ENST00000514355.5_1_3:129112485-129117890:-|nuORF ENSG00000144713|ENST00000429711|RPL32 ENSG00000144713|ENST00000429711|RPL32 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7535400390625 2 630.929357 1259.84416 NaN NaN NaN NaN NaN NaN NaN 170.41 1 170.41 169.91 170.91 0 0 0 0 0.22588 1 35037 35037 1.8442 0.19162 1 21886 4571 14362 14367 21686 21686 0.2246337379558554 IVKNIDDG 8 Unmodified _IVKNIDDG_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27;ENST00000441321.1_1_2:120750895-120751159:-|nuORF ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2354736328125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 66.987 1 63.66 63.16 64.16 -3.3268 0 0 0 0.21486 1 12623 12623 5.7604 0 1 21887 3678 14363 14368 21687 21687 0.019015056264606756 IVKVNFRLRRL 11 Unmodified _IVKVNFRLRRL_ 0 0 0 REV__ENSG00000105556|ENST00000264819|MIER2 REV__ENSG00000105556|ENST00000264819|MIER2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 707.4654541015625 2 707.461887 1412.90922 NaN NaN NaN NaN NaN NaN NaN 168.65 1 163.72 163.22 164.22 -4.9295 0 0 0 0.22632 1 33259 33259 0.00056442 0 1 + 21888 15002 14364 14369 21688 21688 0.2192836832143712 IVLAVPTYS 9 Unmodified _IVLAVPTYS_ 0 0 0 REV__tr|U7SPT2|U7SPT2_FUSNUHemolysinIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01890PE=4SV=1 REV__tr|U7SPT2|U7SPT2_FUSNUHemolysinIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01890PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7819519042969 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 17.582 1 16.271 15.771 16.771 -1.3109 0 0 0 0.19631 1 2822 2822 0.20686 0 1 + 21889 25005 14365 14370 21689 21689 0.06612126217089553 IVLFHIILIGK 11 Unmodified _IVLFHIILIGK_ 0 0 0 REV__DNAJA4|p.Q324H|1|0.13|ENSG00000140403|chr15:78280139-78280139|G/T|missense_variant REV__DNAJA4|p.Q324H|1|0.13|ENSG00000140403|chr15:78280139-78280139|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.22198486328125 4 317.214055 1264.82712 -0.28603 -9.0734E-05 1.5019 0.00047641 1.2158 0.00038567 317.2152707117613 83.07 1.0953 79.462 78.775 79.87 -3.6079 49 30 2 0 0 0 0.82662 1 16170 16170 0.094841 0.094841 1 859670 + 21890 13717 14366 14371 21690 21690 0.20529453189783453 IVLGFGAGVI 10 Unmodified _IVLGFGAGVI_ 0 0 0 tr|U7SUY8|U7SUY8_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01441PE=4SV=1 tr|U7SUY8|U7SUY8_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01441PE=4SV=1 tr|U7SUY8|U7SUY8_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01441PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 473.27392578125 2 473.292028 944.569503 NaN NaN NaN NaN NaN NaN NaN 69.196 1 65.66 65.16 66.16 -3.5362 0 0 0 2.8426 1 13027 13027 0.51642 0.45255 1 21891 26218 14367 14372 21691 21691 0.09500136316614771 IVLHSSRSFSK 11 Unmodified _IVLHSSRSFSK_ 0 0 0 REV__ENSG00000006194|ENST00000219069|ZNF263 REV__ENSG00000006194|ENST00000219069|ZNF263 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7764282226562 2 630.856586 1259.69862 0.06908 4.358E-05 0.34626 0.00021844 0.41534 0.00026202 630.8568139735781 109.29 0.65795 104.84 104.43 105.09 -4.4518 47 18 3 0 0 0 0.64855 1 21012 21012 15.248 5.8654 1 4769100 + 21892 13871 14368 14373 21692 21692 0.07915866208736588 IVLILLVRQLV 11 Unmodified _IVLILLVRQLV_ 0 0 0 nc|ENSG00000163082|Q8IWX5-2|SGPP2;ENSG00000163082|ENST00000321276|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 639.901611328125 2 639.947216 1277.87988 NaN NaN NaN NaN NaN NaN NaN 165.35 1 165.35 164.85 165.85 0 0 0 0 0.22632 1 33545 33545 0.50596 0.50457 1 21893 5397 14369 14374 21693 21693 0.2520541125259115 IVLLLLLLLH 10 Unmodified _IVLLLLLLLH_ 0 0 0 REV__IL21R|p.G360Afs*20|1|0.12|ENSG00000103522|chr16:27448740-27448740|G/-|frameshift_variant REV__IL21R|p.G360Afs*20|1|0.12|ENSG00000103522|chr16:27448740-27448740|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.2784729003906 3 387.277411 1158.8104 NaN NaN NaN NaN NaN NaN NaN 89.492 1 89.492 88.992 89.992 0 0 0 0 0.22588 1 17477 17477 0 0 1 + 21894 14889 14370 14375 21694 21694 0.23734952303857426 IVLVPLQAQ 9 Unmodified _IVLVPLQAQ_ 0 0 0 ENST00000432054.6_1_3:129389356-129389434:-|nuORF ENST00000432054.6_1_3:129389356-129389434:-|nuORF ENST00000432054.6_1_3:129389356-129389434:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.264404296875 2 490.810585 979.606617 0.31834 0.00015624 -0.068898 -3.3816E-05 0.24944 0.00012243 490.8105015372921 99.551 0.47849 95.282 94.999 95.478 -4.2692 21 13 3 0 0 0 0.56979 1 19055 19055 0.073264 0 1 1146000 21895 9793 14371 14376 21695 21695 0.1159980786237611 IVMAFNINYFF 11 Unmodified _IVMAFNINYFF_ 0 0 0 tr|U7SVX0|U7SVX0_FUSNUDUF2179domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01369PE=4SV=1 tr|U7SVX0|U7SVX0_FUSNUDUF2179domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01369PE=4SV=1 tr|U7SVX0|U7SVX0_FUSNUDUF2179domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01369PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2323303222656 3 460.233653 1377.67913 NaN NaN NaN NaN NaN NaN NaN 175.64 1 170.76 170.26 171.26 -4.8739 0 0 0 0.22632 1 34928 34928 1.4551 0 1 21896 26242 14372 14377 21696 21696 0.005397738736064639 IVMKINVIFIA 11 Unmodified _IVMKINVIFIA_ 0 0 0 tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1 tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1 tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7658081054688 2 630.891052 1259.76755 NaN NaN NaN NaN NaN NaN NaN 171.89 1 167.02 166.52 167.52 -4.873 0 0 0 0.22632 1 34081 34081 0.026206 0 1 21897 26197 14373 14378 21697 21697 0.14805814184092014 IVMKSLIVK 9 Unmodified _IVMKSLIVK_ 0 0 0 ENST00000278520.9_2_11:96117649-96117892:-|nuORF ENST00000278520.9_2_11:96117649-96117892:-|nuORF ENST00000278520.9_2_11:96117649-96117892:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.22808837890625 3 344.227951 1029.66202 NaN NaN NaN NaN NaN NaN NaN 45.107 1 42.317 41.817 42.817 -2.79 0 0 0 0.23508 1 8490 8490 2.4985 1.0166 1 21898 8433 14374 14379 21698 21698 0.1483789805847664 IVMVLICFQ 9 Unmodified _IVMVLICFQ_ 0 0 0 SCN7A|p.Y1475Ifs*11|1|0.43|ENSG00000136546|chr2:166406206-166406206|A/-|frameshift_variant;ENSG00000136546|ENST00000643258|SCN7A;ENST00000424326.5_1_2:167262092-167297919:-|nuORF SCN7A|p.Y1475Ifs*11|1|0.43|ENSG00000136546|chr2:166406206-166406206|A/-|frameshift_variant SCN7A|p.Y1475Ifs*11|1|0.43|ENSG00000136546|chr2:166406206-166406206|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.267822265625 2 533.295399 1064.57624 0.19309 0.00010298 -1.1161 -0.0005952 -0.92298 -0.00049222 533.2947881652324 98.726 0.5742 94.769 94.396 94.97 -3.9564 26 16 2 0 0 0 0.1515 1 18953 18953 2.6312 0 1 1817500 21899 4022 14375 14380 21699 21699 0.04653989881308007 IVNKNPNKLP 10 Unmodified _IVNKNPNKLP_ 0 0 0 REV__CON__Q9TTE1 REV__CON__Q9TTE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 568.8935546875 2 568.842948 1135.67134 NaN NaN NaN NaN NaN NaN NaN 166.86 1 161.92 161.42 162.42 -4.948 0 0 0 2.8426 1 32763 32763 0.063865 0 1 + + 21900 13560 14376 14381 21700 21700 0.10893382668359664 IVNNESIEF 9 Unmodified _IVNNESIEF_ 0 0 0 REV__CON__Q28085 REV__CON__Q28085 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.273681640625 2 532.766571 1063.51859 0.4071 0.00021689 4.1023 0.0021856 4.5094 0.0024025 532.7690931245863 100.93 1.1426 96.941 96.069 97.212 -3.9895 82 32 4 0 0 0 0.13832 1 19307 19307 8.9129 0 1 21139000 + + 21901 13534 14377 14382 21701 21701 -0.010628575189002731 IVNPLSRKF 9 Unmodified _IVNPLSRKF_ 0 0 0 REV__ENST00000534277.5_1_16:31765895-31765964:+|nuORF REV__ENST00000534277.5_1_16:31765895-31765964:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 536.8785400390625 2 537.326934 1072.63931 NaN NaN NaN NaN NaN NaN NaN 170.2 1 170.2 169.7 170.7 0 0 0 0 0.23508 1 34986 34986 4.3292 0.38484 1 + 21902 22801 14378 14383 21702 21702 0.10590014985223206 IVNQDELAI 9 Unmodified _IVNQDELAI_ 0 0 0 ENSG00000181804|ENST00000316549|SLC9A9 ENSG00000181804|ENST00000316549|SLC9A9 ENSG00000181804|ENST00000316549|SLC9A9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.73480224609375 2 507.776939 1013.53933 0.023529 1.1948E-05 0.12269 6.2297E-05 0.14622 7.4245E-05 507.77683796988305 116.68 0.97517 112.19 111.65 112.63 -4.486 85 27 4 0 0 0 0.4376 1 22944 22944 4.477 0.60069 1 15560000 21903 6745 14379 14384 21703 21703 0.03309732860736858 IVNQDELAI 9 Unmodified _IVNQDELAI_ 0 0 0 ENSG00000181804|ENST00000316549|SLC9A9 ENSG00000181804|ENST00000316549|SLC9A9 ENSG00000181804|ENST00000316549|SLC9A9 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 507.776939 1013.53933 0.18446 9.3663E-05 0.0046788 2.3758E-06 0.18914 9.6039E-05 507.77681000816693 112.23 0.93784 112.23 111.69 112.63 0 -0.014646 -1.6157E-05 NaN 4.477 86 26 4 NaN NaN NaN NaN 0 NaN NaN 0 22903000 21904 6745 14379 14384 0.03309732860736858 IVNQDELAI 9 Unmodified _IVNQDELAI_ 0 0 0 ENSG00000181804|ENST00000316549|SLC9A9 ENSG00000181804|ENST00000316549|SLC9A9 ENSG00000181804|ENST00000316549|SLC9A9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 507.776939 1013.53933 -0.026249 -1.3329E-05 0.24871 0.00012629 0.22246 0.00011296 507.7768763434896 116.88 1.1159 112.3 111.8 112.92 -4.5815 0.05616 0.00023167 NaN 4.477 91 31 4 NaN NaN NaN NaN 0 NaN NaN 0 18456000 21905 6745 14379 14384 0.03309732860736858 IVNQDELAI 9 Unmodified _IVNQDELAI_ 0 0 0 ENSG00000181804|ENST00000316549|SLC9A9 ENSG00000181804|ENST00000316549|SLC9A9 ENSG00000181804|ENST00000316549|SLC9A9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 507.776939 1013.53933 0.4015 0.00020387 -0.26571 -0.00013492 0.13579 6.8951E-05 507.77664598232485 116.62 1.0651 112.26 111.77 112.84 -4.3585 0.014792 -0.00029075 NaN 4.477 88 29 4 NaN NaN NaN NaN 0 NaN NaN 0 17137000 21906 6745 14379 14384 0.03309732860736858 IVNYHTPTV 9 Unmodified _IVNYHTPTV_ 0 0 0 REV__nc|ENSG00000184571|Q7Z3Z3|PIWIL3 REV__nc|ENSG00000184571|Q7Z3Z3|PIWIL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2785034179688 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 179.09 1 174.22 173.72 174.72 -4.868 0 0 0 0.23508 1 35661 35661 4.756 0 1 + 21907 18905 14380 14385 21704 21704 0.025174564432063562 IVPGEPYGP 9 Unmodified _IVPGEPYGP_ 0 0 0 REV__ENSG00000084731|ENST00000264712|KIF3C REV__ENSG00000084731|ENST00000264712|KIF3C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1617431640625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 111.04 1 106.55 106.05 107.05 -4.4915 0 0 0 0.23508 1 21313 21313 4.897 0.95262 1 + 21908 14469 14381 14386 21705 21705 0.00354693631857117 IVPIIKVNQQ 10 Unmodified _IVPIIKVNQQ_ 0 0 0 REV__ENST00000485596.5_1_15:85634092-85681131:+|nuORF REV__ENST00000485596.5_1_15:85634092-85681131:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3161010742188 2 576.360973 1150.70739 NaN NaN NaN NaN NaN NaN NaN 127.3 1 122.68 122.18 123.18 -4.6172 0 0 0 0.22588 1 25102 25102 3.2813 0.28607 1 + 21909 14301 14382 14387 21706 21706 0.1380683984521056 IVPRRKGRLKR 11 Unmodified _IVPRRKGRLKR_ 0 0 0 REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23992919921875 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 99.965 1 95.806 95.306 96.306 -4.1594 0 0 0 0.22632 1 19642 19642 0.00056442 0.00056442 1 + 21910 21648 14383 14388 21707 21707 0.2418630627280436 IVQESIVS 8 Unmodified _IVQESIVS_ 0 0 0 FLRT2|p.R469S|1|0.39|ENSG00000185070|chr14:85622919-85622919|C/A|missense_variant FLRT2|p.R469S|1|0.39|ENSG00000185070|chr14:85622919-85622919|C/A|missense_variant FLRT2|p.R469S|1|0.39|ENSG00000185070|chr14:85622919-85622919|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22967529296875 2 437.74765 873.480748 -0.52828 -0.00023125 1.545 0.00067631 1.0167 0.00044506 437.7484071178534 109.97 0.44882 105.59 105.41 105.86 -4.3776 19 12 2 0 0 0 0.95515 1 21700 21700 21.747 0 1 1740900 21911 11820 14384 14389 21708 21708 0.038946762862906326 IVQNSIAE 8 Unmodified _IVQNSIAE_ 0 0 0 REV__ENSG00000188738|ENST00000424728|FSIP2 REV__ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23602294921875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 67.477 1 64.15 63.65 64.65 -3.3268 0 0 0 0.21323 1 12723 12723 14.582 2.0501 1 + 21912 19166 14385 14390 21709 21709 0.019015056264720442 IVQTELPAES 10 Unmodified _IVQTELPAES_ 0 0 0 REV__ENST00000565676.1_1_16:71879982-71881989:+|nuORF REV__ENST00000565676.1_1_16:71879982-71881989:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7882080078125 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 171.23 1 166.32 165.82 166.82 -4.9149 0 0 0 0.22588 1 33890 33890 9.3831 1.473 1 + 21913 23113 14386 14391 21710 21710 0.021096981696246075 IVRGKKTY 8 Unmodified _IVRGKKTY_ 0 0 0 REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.2217712402344 3 322.202793 963.58655 NaN NaN NaN NaN NaN NaN NaN 39.831 1 37.291 36.791 37.791 -2.5398 0 0 0 0.21486 1 7122 7122 0.45834 0 1 + 21914 22707 14387 14392 21711 21711 0.10330056922396125 IVRIIIMKN 9 Unmodified _IVRIIIMKN_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.5101623535156 3 367.23885 1098.69472 NaN NaN NaN NaN NaN NaN NaN 60.744 1 57.43 56.93 57.93 -3.3139 0 0 0 0.19622 1 11317 11317 0.40827 0 1 21915 5525 14388 14393 21712 21712 0.149321051813331 IVRRLPIKA 9 Unmodified _IVRRLPIKA_ 0 0 0 REV__sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1 REV__sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2759399414062 2 533.366393 1064.71823 0.11615 6.1953E-05 -4.1419 -0.0022092 -4.0258 -0.0021472 533.3644082794401 157.01 0.14209 157.01 156.96 157.1 0 7 3 3 0 0 0 0.87888 1 31505 31505 4.756 4.1545 1 2531900 + 21916 24703 14389 14394 21713 21713 0.18846287010160268 IVRSTYAYN 9 Unmodified _IVRSTYAYN_ 0 0 0 REV__ENSG00000163376|ENST00000417314|KBTBD8 REV__ENSG00000163376|ENST00000417314|KBTBD8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7828369140625 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 103.22 1 103.22 102.72 103.72 0 0 0 0 0.19679 1 20282 20282 0.40827 0.2854 1 + 21917 17564 14390 14395 21714 21714 0.011205549548776617 IVRWTACA 8 Unmodified _IVRWTACA_ 0 0 0 REV__ENST00000468844.1_1_X:118925076-118925472:-|nuORF REV__ENST00000468844.1_1_X:118925076-118925472:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 307.1647644042969 3 307.165462 918.474557 NaN NaN NaN NaN NaN NaN NaN 94.216 1 90.073 89.573 90.573 -4.1435 0 0 0 0.21486 1 17970 17970 0.45834 0 1 + 21918 22002 14391 14396 21715 21715 0.012058795737516448 IVRWWTLARMT 11 Unmodified _IVRWWTLARMT_ 0 0 0 REV__FAT2|p.C4267Vfs*129|1|0.57|ENSG00000086570|chr5:151505817-151505817|G/-|frameshift_variant REV__FAT2|p.C4267Vfs*129|1|0.57|ENSG00000086570|chr5:151505817-151505817|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72674560546875 3 478.26758 1431.78091 NaN NaN NaN NaN NaN NaN NaN 134.49 1 129.85 129.35 130.35 -4.6399 0 0 0 0.22632 1 26520 26520 0.026206 0 1 + 21919 23526 14392 14397 21716 21716 0.0822906501603029 IVSAATAAA 9 Unmodified _IVSAATAAA_ 0 0 0 REV__ENSG00000139438|ENST00000538780|FAM222A REV__ENSG00000139438|ENST00000538780|FAM222A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7215881347656 2 387.721436 773.428318 -0.092452 -3.5846E-05 0.44564 0.00017278 0.35319 0.00013694 387.7215178713328 33.216 0.73621 33.216 32.954 33.69 0 32 20 2 0 0 0 0.65439 1 6076 6076 9.3474 1.4373 1 1096100 + 21920 16519 14393 14398 21717 21717 0.03254137943315527 IVSCQALEDEP 11 Unmodified _IVSCQALEDEP_ 0 0 0 tr|U7T4U8|U7T4U8_FUSNUPutativeN-acetylmannosamine-6-phosphate2-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nanEPE=3SV=1 tr|U7T4U8|U7T4U8_FUSNUPutativeN-acetylmannosamine-6-phosphate2-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nanEPE=3SV=1 tr|U7T4U8|U7T4U8_FUSNUPutativeN-acetylmannosamine-6-phosphate2-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nanEPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2825317382812 2 602.281728 1202.5489 NaN NaN NaN NaN NaN NaN NaN 132.76 1 127.96 127.46 128.46 -4.799 0 0 0 0.22632 1 25551 25551 0.03141 0 1 21921 26438 14394 14399 21718 21718 -0.044268669160373975 IVSDFGPPP 9 Unmodified _IVSDFGPPP_ 0 0 0 REV__ENST00000486510.1_1_3:51981724-51982493:+|nuORF REV__ENST00000486510.1_1_3:51981724-51982493:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16436767578125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 67.273 1 63.946 63.446 64.446 -3.3268 0 0 0 0.19665 1 12681 12681 0.40827 0.2854 1 + 21922 14049 14395 14400 21719 21719 0.00354693631857117 IVSDVGEP 8 Unmodified _IVSDVGEP_ 0 0 0 REV__ENSG00000149577|ENST00000324225|SIDT2 REV__ENSG00000149577|ENST00000324225|SIDT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3828125 1 815.414525 814.407249 0.53257 0.00043426 0.41084 0.00033501 0.94341 0.00076927 815.4144059312272 120.79 0.54041 116.33 116.02 116.56 -4.467 19 14 2 0 0 0 0.05639 1 23250 23250 86.121 0 1 1750800 + 21923 17014 14396 14401 21720 21720 -0.007378721561849488 IVSDVGEP 8 Unmodified _IVSDVGEP_ 0 0 0 REV__ENSG00000149577|ENST00000324225|SIDT2 REV__ENSG00000149577|ENST00000324225|SIDT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 815.414525 814.407249 0.71013 0.00057905 0.48738 0.00039741 1.1975 0.00097647 815.4144436556533 120.81 0.46017 116.28 116.09 116.55 -4.5221 -0.022017 2.7335E-05 NaN 86.121 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3010500 + 21924 17014 14396 14401 -0.007378721561849488 IVSKQNGEPD 10 Unmodified _IVSKQNGEPD_ 0 0 0 REV__ENSG00000197584|ENST00000452583|KCNMB2 REV__ENSG00000197584|ENST00000452583|KCNMB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7930908203125 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 123.72 1 119.12 118.62 119.62 -4.5926 0 0 0 0.22588 1 23812 23812 9.3831 0.035688 1 + 21925 19352 14397 14402 21721 21721 -0.004043566329301029 IVSRNMIAHY 10 Unmodified _IVSRNMIAHY_ 0 0 0 REV__tr|U7SXZ6|U7SXZ6_FUSNUTIGR01619familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00936PE=4SV=1 REV__tr|U7SXZ6|U7SXZ6_FUSNUTIGR01619familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00936PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.300048828125 2 602.318783 1202.62301 NaN NaN NaN NaN NaN NaN NaN 155.91 1 151.13 150.63 151.63 -4.7791 0 0 0 0.15474 1 30992 30992 36.127 1.195 1 + 21926 25224 14398 14403 21722 21722 0.029805657568431343 IVSSCELKT 9 Unmodified _IVSSCELKT_ 0 0 0 REV__ENST00000561149.1_1_15:58974496-59041769:-|nuORF REV__ENST00000561149.1_1_15:58974496-59041769:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25921630859375 2 490.260068 978.505582 NaN NaN NaN NaN NaN NaN NaN 163.98 1 159.19 158.69 159.69 -4.7898 0 0 0 0.19711 1 32731 32731 0.37959 0.12811 1 + 21927 23048 14399 14404 21723 21723 0.015469880973569161 IVTQYKEALN 10 Unmodified _IVTQYKEALN_ 0 0 0 REV__nc|ENSG00000079459|P37268-4|FDFT1 REV__nc|ENSG00000079459|P37268-4|FDFT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2517700195312 2 589.824421 1177.63429 0.49102 0.00028962 -0.18451 -0.00010883 0.30651 0.00018079 589.8243474050204 140.41 0.94279 135.42 134.98 135.93 -4.9877 56 26 3 0 0 0 0.23598 3 27027 26975;27027;27032 41.956 4.8809 1 8684600 + 21928 14397 14400 14405 21724;21725;21726 21725 0.052576663319541694 IVTQYKEALN 10 Unmodified _IVTQYKEALN_ 0 0 0 REV__nc|ENSG00000079459|P37268-4|FDFT1 REV__nc|ENSG00000079459|P37268-4|FDFT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2734375 2 589.824421 1177.63429 0.49102 0.00028962 -0.18451 -0.00010883 0.30651 0.00018079 589.8243474050204 140.41 0.94279 135.42 134.98 135.93 -4.9877 56 26 3 0 0 0 0.50195 1 27032 27032 41.956 9.9181 1 8684600 + 21929 14397 14400 14405 21727 21727 0.052576663319541694 IVTVPVKGK 9 Unmodified _IVTVPVKGK_ 0 0 0 REV__tr|U7T1H2|U7T1H2_FUSNUDUF3592domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00643PE=4SV=1 REV__tr|U7T1H2|U7T1H2_FUSNUDUF3592domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00643PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.21856689453125 3 314.211177 939.611703 NaN NaN NaN NaN NaN NaN NaN 90.231 1 90.231 89.731 90.731 0 0 0 0 0.19622 1 17626 17626 0.029283 0 1 + 21930 25293 14401 14406 21728 21728 0.13948111724994305 IVVKRPRKV 9 Unmodified _IVVKRPRKV_ 0 0 0 nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;nc|ENSG00000119139|Q9UDY2-5|TJP2;TJP2|p.R179Vfs*132|1|0.16|ENSG00000119139|chr9:69221074-69221074|G/-|frameshift_variant;TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant nc|ENSG00000119139|Q9UDY2-4|TJP2 nc|ENSG00000119139|Q9UDY2-4|TJP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7776489257812 2 547.879668 1093.74478 NaN NaN NaN NaN NaN NaN NaN 150.12 1 145.39 144.89 145.89 -4.7323 0 0 0 0.23508 1 29812 29812 0.6015 0.076735 1 21931 3061 14402 14407 21729 21729 0.20165975901500133 IVVLLVGIVVQ 11 Unmodified _IVVLLVGIVVQ_ 0 0 0 REV__ENSG00000171840|ENST00000305108|NINJ2 REV__ENSG00000171840|ENST00000305108|NINJ2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3256225585938 2 576.391742 1150.76893 0.35135 0.00020252 -3.6502 -0.0021039 -3.2988 -0.0019014 576.3902141486666 126.82 0.14096 122.02 121.96 122.1 -4.7958 5 3 2 0 0 0 0.80486 1 24328 24328 2.9952 1.151 1 1175600 + 21932 18254 14403 14408 21730 21730 0.19957771544500247 IVVLVLHRRR 10 Unmodified _IVVLVLHRRR_ 0 0 0 ENSG00000184564|ENST00000647374|SLITRK6 ENSG00000184564|ENST00000647374|SLITRK6 ENSG00000184564|ENST00000647374|SLITRK6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7716674804688 2 630.922398 1259.83024 NaN NaN NaN NaN NaN NaN NaN 177.85 1 172.94 172.44 173.44 -4.9088 0 0 0 0.22588 1 35473 35473 0.45834 0.057624 1 21933 6918 14404 14409 21731 21731 0.2107214108716562 IVYCVGVKY 9 Unmodified _IVYCVGVKY_ 0 0 0 ANTXR1|p.D182Y|1|0.2|ENSG00000169604|chr2:69075641-69075641|G/T|missense_variant ANTXR1|p.D182Y|1|0.2|ENSG00000169604|chr2:69075641-69075641|G/T|missense_variant ANTXR1|p.D182Y|1|0.2|ENSG00000169604|chr2:69075641-69075641|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2705688476562 2 522.283346 1042.55214 NaN NaN NaN NaN NaN NaN NaN 124.15 1 124.15 123.65 124.65 0 0 0 0 0.19691 1 24477 24477 0.40827 0 1 21934 168 14405 14410 21732 21732 0.03256472719317571 IVYNLDFY 8 Unmodified _IVYNLDFY_ 0 0 0 tr|U7SEE2|U7SEE2_FUSNURibosomalproteinL11methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmAPE=3SV=1 tr|U7SEE2|U7SEE2_FUSNURibosomalproteinL11methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmAPE=3SV=1 tr|U7SEE2|U7SEE2_FUSNURibosomalproteinL11methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6942138671875 2 523.7633 1045.51205 0.44684 0.00023404 -0.80924 -0.00042385 -0.36241 -0.00018981 523.7626869832507 154.84 0.96638 149.59 149.14 150.11 -5.2526 54 26 3 0 0 0 0.49844 1 29957 29957 28.173 1.832 1 5045200 21935 25877 14406 14411 21733 21733 -0.008887506796099842 IVYRRKHQELQ 11 Unmodified _IVYRRKHQELQ_ 0 0 0 ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27325439453125 3 490.616037 1468.82628 0.19214 9.4268E-05 -0.33702 -0.00016535 -0.14488 -7.1079E-05 490.61584081866084 142.72 0.86758 142.72 142.44 143.31 0 70 24 4 0 0 0 0.77537 2 28441 28441;28449 6.6235 2.1177 1 10951000 21936 6120 14407 14412 21734;21735 21734 0.11062006802808355 IVYRRKHQELQ 11 Unmodified _IVYRRKHQELQ_ 0 0 0 ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2650146484375 3 490.616037 1468.82628 0.19331 9.4841E-05 -0.6244 -0.00030634 -0.43109 -0.0002115 490.6158245706806 146.86 0.96797 142.17 141.92 142.89 -4.6868 66 27 3 0 0 0 0.96033 1 29134 29134 9.7643 7.8367 1 5547300 21937 6120 14407 14412 21736 21736 0.11062006802808355 IVYRRKHQELQ 11 Unmodified _IVYRRKHQELQ_ 0 0 0 ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26409912109375 3 490.616037 1468.82628 0.09068 4.4489E-05 -0.63034 -0.00030925 -0.53966 -0.00026477 490.61580417825786 147.35 1.1398 142.35 142.04 143.18 -5 61 32 3 0 0 0 0.96117 1 28500 28500 6.6235 5.6979 1 5031200 21938 6120 14407 14412 21737 21737 0.11062006802808355 IWEHQFLA 8 Unmodified _IWEHQFLA_ 0 0 0 ENST00000340080.8_1_7:7636044-7645605:+|nuORF ENST00000340080.8_1_7:7636044-7645605:+|nuORF ENST00000340080.8_1_7:7636044-7645605:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2667846679688 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 21.915 1 20.194 19.694 20.694 -1.7211 0 0 0 0.21486 1 3453 3453 5.7604 1.0044 1 21939 8844 14408 14413 21738 21738 0.004054911343700951 IWGKRSYT 8 Unmodified _IWGKRSYT_ 0 0 0 ENST00000515734.2_1_5:59783993-59785590:+|nuORF ENST00000515734.2_1_5:59783993-59785590:+|nuORF ENST00000515734.2_1_5:59783993-59785590:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.1989440917969 3 337.518781 1009.53451 -0.64997 -0.00021938 0.86609 0.00029232 0.21612 7.2945E-05 337.51894558568335 37.541 0.63163 35.073 34.806 35.438 -2.4688 69 17 5 0 0 0 8448 1 6983 6983 13.615 12.988 1 14894000 21940 10791 14409 14414 21739 21739 0.030128935086509046 IWGKRSYT 8 Unmodified _IWGKRSYT_ 0 0 0 ENST00000515734.2_1_5:59783993-59785590:+|nuORF ENST00000515734.2_1_5:59783993-59785590:+|nuORF ENST00000515734.2_1_5:59783993-59785590:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 337.518781 1009.53451 -0.39025 -0.00013172 0.79032 0.00026675 0.40008 0.00013503 337.5189080131422 35.006 0.89362 35.006 34.725 35.619 0 -0.044664 4.8892E-05 NaN 13.615 63 25 4 NaN NaN NaN NaN 0 NaN NaN 0 7384900 21941 10791 14409 14414 0.030128935086509046 IWGKRSYT 8 Unmodified _IWGKRSYT_ 0 0 0 ENST00000515734.2_1_5:59783993-59785590:+|nuORF ENST00000515734.2_1_5:59783993-59785590:+|nuORF ENST00000515734.2_1_5:59783993-59785590:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 337.518781 1009.53451 0.09151 3.0886E-05 0.29226 9.8642E-05 0.38377 0.00012953 337.5186966190715 37.416 0.68504 35.068 34.789 35.474 -2.3479 0.017526 -0.00045543 NaN 13.615 70 19 5 NaN NaN NaN NaN 0 NaN NaN 0 10229000 21942 10791 14409 14414 0.030128935086509046 IWGKRSYT 8 Unmodified _IWGKRSYT_ 0 0 0 ENST00000515734.2_1_5:59783993-59785590:+|nuORF ENST00000515734.2_1_5:59783993-59785590:+|nuORF ENST00000515734.2_1_5:59783993-59785590:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 337.518781 1009.53451 -0.45712 -0.00015429 1.1435 0.00038596 0.68641 0.00023168 337.5189153971496 37.393 0.80384 35.056 34.628 35.431 -2.3375 0.0051139 0.00040654 NaN 13.615 74 22 5 NaN NaN NaN NaN 0 NaN NaN 0 3710400 21943 10791 14409 14414 0.030128935086509046 IWHIEKRI 8 Unmodified _IWHIEKRI_ 0 0 0 REV__nc|ENSG00000214900|Q8WXQ3|LINC01599 REV__nc|ENSG00000214900|Q8WXQ3|LINC01599 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7784423828125 2 547.827101 1093.63965 NaN NaN NaN NaN NaN NaN NaN 9.9101 1 8.8639 8.3639 9.3639 -1.0462 0 0 0 0.2396 1 1040 1040 0.0082765 0 1 + 21944 24270 14410 14415 21740 21740 0.09657434705081869 IWICRKERWFK 11 Unmodified _IWICRKERWFK_ 0 0 0 REV__ENST00000427383.6_2_11:125495702-125499145:+|nuORF REV__ENST00000427383.6_2_11:125495702-125499145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.272705078125 3 522.290496 1563.84966 NaN NaN NaN NaN NaN NaN NaN 86.388 1 86.388 85.888 86.888 0 0 0 0 0.22632 1 16860 16860 0.094841 0 1 + 21945 21580 14411 14416 21741 21741 0.09028729315741657 IWICRKERWFK 11 Unmodified _IWICRKERWFK_ 0 0 0 REV__ENST00000427383.6_2_11:125495702-125499145:+|nuORF REV__ENST00000427383.6_2_11:125495702-125499145:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2630004882812 3 522.290496 1563.84966 -0.25997 -0.00013578 -1.3722 -0.0007167 -1.6322 -0.00085248 522.2903203685919 76.199 0.42903 72.784 72.541 72.97 -3.4151 13 11 2 0 0 0 0.89099 1 14842 14842 0.094841 0.068635 1 2976100 + 21946 21580 14411 14416 21742 21742 0.09028729315741657 IWICRKERWFK 11 Unmodified _IWICRKERWFK_ 0 0 0 REV__ENST00000427383.6_2_11:125495702-125499145:+|nuORF REV__ENST00000427383.6_2_11:125495702-125499145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2720336914062 3 522.290496 1563.84966 NaN NaN NaN NaN NaN NaN NaN 76.489 1 72.855 72.355 73.355 -3.6337 0 0 0 0.22632 1 14563 14563 0.0059557 0.0053913 1 + 21947 21580 14411 14416 21743 21743 0.09028729315741657 IWIFVHCRWFY 11 Unmodified _IWIFVHCRWFY_ 0 0 0 REV__TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant REV__TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3948364257812 2 785.394825 1568.7751 NaN NaN NaN NaN NaN NaN NaN 16.605 1 16.605 16.105 17.105 0 0 0 0 0.23698 1 2586 2586 0.35063 0 1 + 21948 25488 14412 14417 21744 21744 0.013459665043683344 IWIFVHCRWFY 11 Unmodified _IWIFVHCRWFY_ 0 0 0 REV__TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant REV__TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3976440429688 2 785.394825 1568.7751 NaN NaN NaN NaN NaN NaN NaN 124.88 1 120.28 119.78 120.78 -4.5984 0 0 0 0.22632 1 24625 24625 0.172 0 1 + 21949 25488 14412 14417 21745 21745 0.013459665043683344 IWKFRYDRPFH 11 Unmodified _IWKFRYDRPFH_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27587890625 3 522.277244 1563.8099 NaN NaN NaN NaN NaN NaN NaN 106.14 1 106.14 105.64 106.64 0 0 0 0 0.22632 1 20863 20863 0.00056442 0 1 21950 3525 14413 14418 21746 21746 0.05054925636682128 IWKWFTVDDTM 11 Unmodified _IWKWFTVDDTM_ 0 0 0 REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2315368652344 3 481.232201 1440.67477 NaN NaN NaN NaN NaN NaN NaN 8.6844 1 7.6498 7.1498 8.1498 -1.0347 0 0 0 0.23698 1 832 832 0.094841 0 1 + 21951 13453 14414 14419 21747 21747 -0.027937353399238418 IWLFVIWFMEW 11 Unmodified _IWLFVIWFMEW_ 0 0 0 REV__ENST00000578529.5_1_18:259269-260310:-|nuORF REV__ENST00000578529.5_1_18:259269-260310:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4010009765625 2 785.401784 1568.78901 NaN NaN NaN NaN NaN NaN NaN 92.12 1 88.195 87.695 88.695 -3.9251 0 0 0 0.22632 1 18038 18038 0.00056442 0 1 + 21952 23225 14415 14420 21748 21748 0.027371992128109923 IWLFVIWFMEW 11 Unmodified _IWLFVIWFMEW_ 0 0 0 REV__ENST00000578529.5_1_18:259269-260310:-|nuORF REV__ENST00000578529.5_1_18:259269-260310:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4052734375 2 785.401784 1568.78901 NaN NaN NaN NaN NaN NaN NaN 175.41 1 170.62 170.12 171.12 -4.7898 0 0 0 0.23698 1 35864 35864 1.4819 0.15237 1 + 21953 23225 14415 14420 21749 21749 0.027371992128109923 IWLFVIWFMEW 11 Unmodified _IWLFVIWFMEW_ 0 0 0 REV__ENST00000578529.5_1_18:259269-260310:-|nuORF REV__ENST00000578529.5_1_18:259269-260310:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4010620117188 2 785.401784 1568.78901 NaN NaN NaN NaN NaN NaN NaN 159.18 1 153.91 153.41 154.41 -5.2748 0 0 0 0.23698 1 30895 30895 1.4819 1.1313 1 + 21954 23225 14415 14420 21750 21750 0.027371992128109923 IWLFVIWFMEW 11 Unmodified _IWLFVIWFMEW_ 0 0 0 REV__ENST00000578529.5_1_18:259269-260310:-|nuORF REV__ENST00000578529.5_1_18:259269-260310:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4028930664062 2 785.401784 1568.78901 NaN NaN NaN NaN NaN NaN NaN 116.89 1 112.53 112.03 113.03 -4.3585 0 0 0 0.22632 1 22502 22502 0.026206 0 1 + 21955 23225 14415 14420 21751 21751 0.027371992128109923 IWLICKELYD 10 Unmodified _IWLICKELYD_ 0 0 0 REV__LRP1|p.R1447C|1|0.5|ENSG00000123384|chr12:57177569-57177569|C/T|missense_variant REV__LRP1|p.R1447C|1|0.5|ENSG00000123384|chr12:57177569-57177569|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 648.3408813476562 2 648.338849 1294.66315 NaN NaN NaN NaN NaN NaN NaN 167.5 1 167.5 167 168 0 0 0 0 2.8426 1 34233 34233 0.20733 0 1 + 21956 23809 14416 14421 21752 21752 0.027600676367228516 IWRRHGIW 8 Unmodified _IWRRHGIW_ 0 0 0 ENSG00000205856|ENST00000382097|C22orf42 ENSG00000205856|ENST00000382097|C22orf42 ENSG00000205856|ENST00000382097|C22orf42 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2153625488281 3 375.213915 1122.61992 NaN NaN NaN NaN NaN NaN NaN 38.123 1 38.123 37.623 38.623 0 0 0 0 0.2386 1 7064 7064 0.12286 0 1 21957 7659 14417 14422 21753 21753 0.06351103484985288 IWSCVMALG 9 Unmodified _IWSCVMALG_ 0 0 0 REV__ENST00000370251.3_2_X:152617491-152617668:+|nuORF REV__ENST00000370251.3_2_X:152617491-152617668:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2733154296875 2 490.240624 978.466695 0.10981 5.3832E-05 -1.1207 -0.00054939 -1.0108 -0.00049556 490.24018419834175 93.326 0.68887 89.336 89.002 89.691 -3.9907 31 19 2 0 0 0 0.32428 1 18331 18331 30.225 3.3412 1 1405800 + 21958 20977 14418 14423 21754 21754 -0.023400157380137898 IWWKAISYH 9 Unmodified _IWWKAISYH_ 0 0 0 nc|ENSG00000178233|Q8IW70-2|TMEM151B;ENSG00000178233|ENST00000451188|TMEM151B nc|ENSG00000178233|Q8IW70-2|TMEM151B nc|ENSG00000178233|Q8IW70-2|TMEM151B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2830200195312 2 602.319109 1202.62366 NaN NaN NaN NaN NaN NaN NaN 12.419 1 12.419 11.919 12.919 0 0 0 0 0.23508 1 1728 1728 2.3027 0 1 21959 6571 14419 14424 21755 21755 0.03045728468168818 IWYWTRAYYEF 11 Unmodified _IWYWTRAYYEF_ 0 0 0 REV__SLC44A5|p.D237Y|1|0.21|ENSG00000137968|chr1:75237018-75237018|C/A|missense_variant REV__SLC44A5|p.D237Y|1|0.21|ENSG00000137968|chr1:75237018-75237018|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.267578125 3 533.253993 1596.74015 NaN NaN NaN NaN NaN NaN NaN 144.56 1 139.49 138.99 139.99 -5.0671 0 0 0 0.22632 1 27893 27893 0.50596 0.50539 1 + 21960 24645 14420 14425 21756 21756 -0.034349978225918676 IYANFNRII 9 Unmodified _IYANFNRII_ 0 0 0 POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2123107910156 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 89.102 1 85.309 84.809 85.809 -3.7926 0 0 0 0.19661 1 17432 17432 0.40827 0 1 21961 6496 14421 14426 21757 21757 0.06217424605551969 IYARGSTPP 9 Unmodified _IYARGSTPP_ 0 0 0 REV__ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant REV__ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2445373535156 2 481.258717 960.50288 NaN NaN NaN NaN NaN NaN NaN 31.726 1 29.496 28.996 29.996 -2.2305 0 0 0 0.1599 1 5766 5766 29.082 2.1979 1 + 21962 12887 14422 14427 21758 21758 0.021049007547162546 IYDPQTAAHY 10 Unmodified _IYDPQTAAHY_ 0 0 0 REV__ENSG00000037042|ENST00000251412|TUBG2 REV__ENSG00000037042|ENST00000251412|TUBG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2757568359375 2 589.77747 1177.54039 0.7482 0.00044127 -1.1504 -0.00067851 -0.40225 -0.00023724 589.7769998265048 105.61 0.31906 101.52 101.47 101.78 -4.0913 14 8 2 0 0 0 0.57735 1 20357 20357 20.454 2.0805 1 1330600 + 21963 14034 14423 14428 21759 21759 -0.041280527703293046 IYDSDWNPHN 10 Unmodified _IYDSDWNPHN_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.76953125 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 72.081 1 72.081 71.581 72.581 0 0 0 0 2.8426 1 13970 13970 1.9064 0 1 21964 514;515 14424 14429 21760 21760 -0.09866428781083414 IYDSILGHAY 10 Unmodified _IYDSILGHAY_ 0 0 0 REV__nc|ENSG00000136104|Q5TBB1-2|RNASEH2B REV__nc|ENSG00000136104|Q5TBB1-2|RNASEH2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.31103515625 2 576.290214 1150.56587 NaN NaN NaN NaN NaN NaN NaN 115.21 1 110.9 110.4 111.4 -4.3136 0 0 0 0.22569 1 22182 22182 15.847 5.7733 1 + 21965 16312 14425 14430 21761 21761 -0.0033857824789720325 IYDVVSTNIE 10 Unmodified _IYDVVSTNIE_ 0 0 0 sp|F5HA06|UL147_HCMVMPutativeviralCXCchemokine2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL147PE=3SV=1 sp|F5HA06|UL147_HCMVMPutativeviralCXCchemokine2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL147PE=3SV=1 sp|F5HA06|UL147_HCMVMPutativeviralCXCchemokine2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL147PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3153686523438 2 576.792786 1151.57102 0.28979 0.00016715 -0.83788 -0.00048328 -0.54808 -0.00031613 576.7924481512862 118.67 0.70872 114.17 113.93 114.64 -4.502 25 19 2 0 0 0 0.81109 1 23459 23459 13.042 4.8869 1 2940600 21966 25716 14426 14431 21762 21762 0.0012968082405677706 IYEAAVNLS 9 Unmodified _IYEAAVNLS_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2578125 2 490.258382 978.502212 0.21081 0.00010335 0.27233 0.00013351 0.48314 0.00023686 490.25781803439827 116.61 0.73523 112.13 111.72 112.46 -4.486 34 20 3 0 0 0 0.38188 1 22980 22980 26.884 3.7352 1 1376600 21967 1183 14427 14432 21763 21763 0.012100613149868877 IYEGIASSGGI 11 Unmodified _IYEGIASSGGI_ 0 0 0 REV__RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant REV__RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2642822265625 2 533.774396 1065.53424 -0.11824 -6.3112E-05 -0.28453 -0.00015187 -0.40276 -0.00021499 533.7742213114442 55.028 0.5854 52.145 51.94 52.525 -2.8837 27 16 2 0 0 0 0.70833 1 10579 10579 13.042 0.51092 1 4744200 + 21968 14146 14428 14433 21764 21764 0.004094289981594557 IYEIDESRL 9 Unmodified _IYEIDESRL_ 0 0 0 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 REV__tr|U7SU62|U7SU62_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01115PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21893310546875 3 379.864394 1136.57135 -0.68426 -0.00025993 0.73342 0.0002786 0.049163 1.8675E-05 379.86463361360387 42.703 0.66041 40.097 39.788 40.448 -2.606 79 18 6 0 0 0 0.72996 1 7640 7640 4.897 0.18109 1 47956000 + 21969 25144 14429 14434 21765 21765 0.008531005438953798 IYFFYNCQY 9 Unmodified _IYFFYNCQY_ 0 0 0 ENST00000373864.5_1_1:28339722-28384581:-|nuORF ENST00000373864.5_1_1:28339722-28384581:-|nuORF ENST00000373864.5_1_1:28339722-28384581:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.772705078125 2 630.773342 1259.53213 0.74491 0.00046987 -1.2275 -0.00077426 -0.48256 -0.00030438 630.7725522947426 52.899 0.5162 50.015 49.625 50.141 -2.8837 21 14 2 0 0 0 0.53429 1 10032 10032 0.40827 0 1 1765700 21970 9208 14430 14435 21766 21766 -0.08725323011321962 IYFTRTTNA 9 Unmodified _IYFTRTTNA_ 0 0 0 ENST00000321341.10_2_18:48405602-48434530:+|nuORF ENST00000321341.10_2_18:48405602-48434530:+|nuORF ENST00000321341.10_2_18:48405602-48434530:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7802124023438 2 543.782556 1085.55056 0.74768 0.00040658 1.6238 0.00088299 2.3715 0.0012896 543.7835739386302 102.22 1.5705 102.22 101.33 102.9 0 122 44 4 0 0 0 0.58804 1 19910 19910 13.906 0.86358 1 22701000 21971 8719 14431 14436 21767 21767 0.01120554954900399 IYGKLYQIRWE 11 Unmodified _IYGKLYQIRWE_ 0 0 0 REV__nc|ENSG00000188501|Q6UWM7-2|LCTL REV__nc|ENSG00000188501|Q6UWM7-2|LCTL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2718505859375 3 490.269755 1467.78744 NaN NaN NaN NaN NaN NaN NaN 168.8 1 164.01 163.51 164.51 -4.7898 0 0 0 0.22632 1 34144 34144 0.03141 0.0052036 1 + 21972 19149 14432 14437 21768 21768 0.07225281448381793 IYGKLYQIRWE 11 Unmodified _IYGKLYQIRWE_ 0 0 0 REV__nc|ENSG00000188501|Q6UWM7-2|LCTL REV__nc|ENSG00000188501|Q6UWM7-2|LCTL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2705383300781 3 490.269755 1467.78744 NaN NaN NaN NaN NaN NaN NaN 155.57 1 150.28 149.78 150.78 -5.2854 0 0 0 0.22632 1 30172 30172 0.026206 0 1 + 21973 19149 14432 14437 21769 21769 0.07225281448381793 IYGKLYQIRWE 11 Unmodified _IYGKLYQIRWE_ 0 0 0 REV__nc|ENSG00000188501|Q6UWM7-2|LCTL REV__nc|ENSG00000188501|Q6UWM7-2|LCTL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2703552246094 3 490.269755 1467.78744 NaN NaN NaN NaN NaN NaN NaN 167.16 1 162.21 161.71 162.71 -4.948 0 0 0 0.22632 1 32853 32853 0.026206 0 1 + 21974 19149 14432 14437 21770 21770 0.07225281448381793 IYGKLYQIRWE 11 Unmodified _IYGKLYQIRWE_ 0 0 0 REV__nc|ENSG00000188501|Q6UWM7-2|LCTL REV__nc|ENSG00000188501|Q6UWM7-2|LCTL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2713623046875 3 490.269755 1467.78744 NaN NaN NaN NaN NaN NaN NaN 170.05 1 165.17 164.67 165.67 -4.873 0 0 0 0.22632 1 33631 33631 0.026206 0 1 + 21975 19149 14432 14437 21771 21771 0.07225281448381793 IYHAVKDAVA 10 Unmodified _IYHAVKDAVA_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;KDM3A|p.V1299A|1|0.33|ENSG00000115548|chr2:86492049-86492049|T/C|missense_variant;ENST00000470160.1_1_2:86716620-86719239:+|nuORF ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7899780273438 2 543.800749 1085.58694 0.16164 8.7898E-05 -0.75474 -0.00041043 -0.5931 -0.00032253 543.8006716111843 114.45 0.7021 109.89 109.52 110.22 -4.555 30 19 2 0 0 0 0.40256 1 21941 21941 30.637 10.183 1 1449000 21976 2865 14433 14438 21772 21772 0.04757431851612637 IYHLPSAQ 8 Unmodified _IYHLPSAQ_ 0 0 0 nc|ENSG00000204872|Q9UHF3|NAT8B nc|ENSG00000204872|Q9UHF3|NAT8B nc|ENSG00000204872|Q9UHF3|NAT8B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25042724609375 2 464.747985 927.481417 0.32784 0.00015236 0.010423 4.8442E-06 0.33826 0.00015721 464.74778757501946 69.668 0.37766 66.088 65.898 66.276 -3.5798 13 10 2 0 0 0 0.52597 1 13111 13111 26.884 5.137 1 881360 21977 12562 14434 14439 21773 21773 0.014775157260032756 IYHVYDNY 8 Unmodified _IYHVYDNY_ 0 0 0 REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4 REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7806396484375 2 543.748182 1085.48181 NaN NaN NaN NaN NaN NaN NaN 126.32 1 121.71 121.21 122.21 -4.6107 0 0 0 0.21181 1 24904 24904 15.768 3.2367 1 + 21978 17051 14435 14440 21774 21774 -0.057511093448283646 IYIIGLRHLY 10 Unmodified _IYIIGLRHLY_ 0 0 0 REV__PRKG2|p.R575I|1|0.36|ENSG00000138669|chr4:81135207-81135207|C/A|missense_variant REV__PRKG2|p.R575I|1|0.36|ENSG00000138669|chr4:81135207-81135207|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.77294921875 2 630.876791 1259.73903 NaN NaN NaN NaN NaN NaN NaN 110.55 1 110.55 110.05 111.05 0 0 0 0 0.22588 1 21741 21741 7.2892 1.0834 1 + 21979 24511 14436 14441 21775 21775 0.11954832599190013 IYIIGLRHLY 10 Unmodified _IYIIGLRHLY_ 0 0 0 REV__PRKG2|p.R575I|1|0.36|ENSG00000138669|chr4:81135207-81135207|C/A|missense_variant REV__PRKG2|p.R575I|1|0.36|ENSG00000138669|chr4:81135207-81135207|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7601318359375 2 630.876791 1259.73903 NaN NaN NaN NaN NaN NaN NaN 115.74 1 111.16 110.66 111.66 -4.5815 0 0 0 2.8426 1 22221 22221 0.043787 0.030522 1 + 21980 24511 14436 14441 21776 21776 0.11954832599190013 IYKKMVAC 8 Unmodified _IYKKMVAC_ 0 0 0 REV__tr|U7SRP5|U7SRP5_FUSNUL-lactatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ldhPE=3SV=1 REV__tr|U7SRP5|U7SRP5_FUSNUL-lactatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ldhPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.1752014160156 3 319.17497 954.50308 NaN NaN NaN NaN NaN NaN NaN 91.815 1 88.006 87.506 88.506 -3.8083 0 0 0 0.21486 1 17582 17582 0.45834 0 1 + 21981 25036 14437 14442 21777 21777 0.024008611586964435 IYKYRERVFYK 11 Unmodified _IYKYRERVFYK_ 0 0 0 tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1 tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1 tr|U7SSK2|U7SSK2_FUSNUProbablelipidIIflippaseMurJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murJPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2630004882812 3 522.292671 1563.85618 NaN NaN NaN NaN NaN NaN NaN 157.28 1 152.49 151.99 152.99 -4.7885 0 0 0 0.22632 1 31276 31276 0.50596 0.47455 1 21982 26106 14438 14443 21778 21778 0.09680945748095837 IYLDFYKEKIH 11 Unmodified _IYLDFYKEKIH_ 0 0 0 REV__tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1 REV__tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26458740234375 3 490.26601 1467.7762 NaN NaN NaN NaN NaN NaN NaN 52.672 1 52.672 52.172 53.172 0 0 0 0 0.22632 1 10016 10016 0.00056442 0 1 + 21983 25056 14439 14444 21779 21779 0.0610245935426974 IYLIKLKKLI 10 Unmodified _IYLIKLKKLI_ 0 0 0 ENSG00000013293|ENST00000231706|SLC7A14 ENSG00000013293|ENST00000231706|SLC7A14 ENSG00000013293|ENST00000231706|SLC7A14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7786254882812 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 159.62 1 154.35 153.85 154.85 -5.2712 0 0 0 0.22588 1 30972 30972 0.45834 0.057624 1 21984 1092 14440 14445 21780 21780 0.25098910366659766 IYLILFLTV 9 Unmodified _IYLILFLTV_ 0 0 0 SCN10A|p.C866Y|1|0.26|ENSG00000185313|chr3:38728585-38728585|C/T|missense_variant SCN10A|p.C866Y|1|0.26|ENSG00000185313|chr3:38728585-38728585|C/T|missense_variant SCN10A|p.C866Y|1|0.26|ENSG00000185313|chr3:38728585-38728585|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.78271484375 2 547.846636 1093.67872 NaN NaN NaN NaN NaN NaN NaN 140.67 1 140.67 140.17 141.17 0 0 0 0 0.23508 1 28013 28013 8.5933 0 1 21985 25640 14441 14446 21781 21781 0.135627222160565 IYLMMLFI 8 Unmodified _IYLMMLFI_ 0 0 0 ENSG00000188921|ENST00000495827|HACD4 ENSG00000188921|ENST00000495827|HACD4 ENSG00000188921|ENST00000495827|HACD4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2689819335938 2 522.287043 1042.55953 NaN NaN NaN NaN NaN NaN NaN 156.43 1 151.15 150.65 151.65 -5.2854 0 0 0 0.21486 1 30349 30349 11.114 1.767 1 21986 7207 14442 14447 21782 21782 0.03995488995360574 IYNFSTDAL 9 Unmodified _IYNFSTDAL_ 0 0 0 REV__nc|nan|Q8IYJ2|C10orf67 REV__nc|nan|Q8IYJ2|C10orf67 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2569580078125 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 155.66 1 150.88 150.38 151.38 -4.7791 0 0 0 0.23508 1 30942 30942 11.64 3.047 1 + 21987 18641 14443 14448 21783 21783 -0.022422425476406715 IYNVNKMPS 9 Unmodified _IYNVNKMPS_ 0 0 0 REV__tr|U7SIT6|U7SIT6_FUSNUEpoxyqueuosinereductaseQueHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queHPE=3SV=1 REV__tr|U7SIT6|U7SIT6_FUSNUEpoxyqueuosinereductaseQueHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queHPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2841796875 2 533.273509 1064.53247 NaN NaN NaN NaN NaN NaN NaN 95.98 1 95.98 95.48 96.48 0 0 0 0 0.23508 1 18802 18802 12.532 1.4171 1 + 21988 24895 14444 14449 21784 21784 0.00278096708530029 IYQLNPTL 8 Unmodified _IYQLNPTL_ 0 0 0 REV__ENSG00000188419|ENST00000357749|CHM REV__ENSG00000188419|ENST00000357749|CHM MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24896240234375 2 481.271293 960.528032 NaN NaN NaN NaN NaN NaN NaN 91.432 1 91.432 90.932 91.932 0 0 0 0 0.20896 1 17866 17866 18.135 1.0221 1 + 21989 19146 14445 14450 21785 21785 0.046189555572937024 IYSNTALHY 9 Unmodified _IYSNTALHY_ 0 0 0 nc|ENSG00000187984|Q9H560|ANKRD19P;ENST00000473204.5_1_9:95571946-95584543:+|nuORF nc|ENSG00000187984|Q9H560|ANKRD19P nc|ENSG00000187984|Q9H560|ANKRD19P MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2824096679688 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 49.582 1 46.583 46.083 47.083 -2.999 0 0 0 0.20628 1 9069 9069 21.747 3.6003 1 21990 10237 14446 14451 21786 21786 -0.01303133936426093 IYSRRLSQE 9 Unmodified _IYSRRLSQE_ 0 0 0 nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant nc|ENSG00000001626|P13569-2|CFTR nc|ENSG00000001626|P13569-2|CFTR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3138427734375 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 130.57 1 125.8 125.3 126.3 -4.7725 0 0 0 0.22962 1 25130 25130 14.838 2.3067 1 21991 958 14447 14452 21787 21787 0.04019031249231375 IYTRLNTY 8 Unmodified _IYTRLNTY_ 0 0 0 ENSG00000154080|ENST00000618847|CHST9 ENSG00000154080|ENST00000618847|CHST9 ENSG00000154080|ENST00000618847|CHST9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27734375 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 44.848 1 42.082 41.582 42.582 -2.7661 0 0 0 0.21486 1 8130 8130 12.532 1.7076 1 21992 4993 14448 14453 21788 21788 0.025174564432290936 IYWREFIKLHY 11 Unmodified _IYWREFIKLHY_ 0 0 0 ENSG00000181562|ENST00000326842|EDDM3A ENSG00000181562|ENST00000326842|EDDM3A ENSG00000181562|ENST00000326842|EDDM3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6763305664062 3 523.285516 1566.83472 -0.63829 -0.00033401 3.5849 0.0018759 2.9466 0.0015419 523.2885021917447 78.84 0.17908 75.036 74.913 75.092 -3.8048 5 4 2 0 0 0 0.96214 1 14935 14935 1.4551 0.12547 1 1038100 21993 6729 14449 14454 21789 21789 0.07397560719414287 IYYRSPSA 8 Unmodified _IYYRSPSA_ 0 0 0 REV__tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1 REV__tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74432373046875 2 478.745442 955.476331 -0.022564 -1.0803E-05 0.44166 0.00021144 0.41909 0.00020064 478.7456882425647 40.626 1.086 38.087 37.78 38.866 -2.5398 55 30 3 0 0 0 0.52597 1 7253 7253 26.884 0 1 14654000 + 21994 24896 14450 14455 21790 21790 -0.003187881366216061 KAAELYERV 9 Unmodified _KAAELYERV_ 0 0 0 nc|ENSG00000186642|O00408-5|PDE2A;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A nc|ENSG00000186642|O00408-5|PDE2A nc|ENSG00000186642|O00408-5|PDE2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 83.868 1 80.26 79.76 80.76 -3.6079 0 0 0 0.23508 1 16399 16399 4.897 0.70751 1 21995 7072 14451 14456 21791 21791 0.046171279889904326 KAAKQGDTI 9 Unmodified _KAAKQGDTI_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210;NUP210|p.Q1266Sfs*28|1|0.4|ENSG00000132182|chr3:13335502-13335502|C/-|frameshift_variant ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 466.31817626953125 2 466.263999 930.513445 NaN NaN NaN NaN NaN NaN NaN 160.96 1 160.96 160.46 161.46 0 0 0 0 0.23508 1 32323 32323 11.64 0 1 21996 3709 14452 14457 21792 21792 0.04540883409140406 KAAPLRSYG 9 Unmodified _KAAPLRSYG_ 0 0 0 REV__ENSG00000132938|ENST00000612955|MTUS2 REV__ENSG00000132938|ENST00000612955|MTUS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77459716796875 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 173.91 1 173.91 173.41 174.41 0 0 0 0 0.23508 1 35983 35983 6.2058 0.44535 1 + 21997 16144 14453 14458 21793 21793 0.05220893508658264 KAARLVETA 9 Unmodified _KAARLVETA_ 0 0 0 REV__ENSG00000131370|ENST00000383791|SH3BP5 REV__ENSG00000131370|ENST00000383791|SH3BP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 320.1936950683594 3 320.194186 957.56073 NaN NaN NaN NaN NaN NaN NaN 176.5 1 176.5 176 177 0 0 0 0 0.23508 1 36563 36563 1.0715 0 1 + 21998 16068 14454 14459 21794 21794 0.08025162680121412 KACNAHGG 8 Unmodified _KACNAHGG_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 379.1650085449219 2 379.17413 756.333707 NaN NaN NaN NaN NaN NaN NaN 88.027 1 88.027 87.527 88.527 0 0 0 0 0.23899 1 17179 17179 1.3295 1.2067 1 21999 6261 14455 14460 21795 21795 -0.0542069907963878 KADEAAGPPLP 11 Unmodified _KADEAAGPPLP_ 0 0 0 REV__nc|ENSG00000136535|Q16650-2|TBR1 REV__nc|ENSG00000136535|Q16650-2|TBR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2825927734375 2 533.282389 1064.55022 0.0096556 5.1492E-06 0.14761 7.8717E-05 0.15726 8.3866E-05 533.2824757530736 90.094 1.4208 86.234 85.542 86.963 -3.8595 119 39 4 0 0 0 0.46231 2 17583 17583;17631 33.445 1.1394 1 12558000 + 22000 16337 14456 14461 21796;21797 21796 0.020531352350417365 KADEAAGPPLP 11 Unmodified _KADEAAGPPLP_ 0 0 0 REV__nc|ENSG00000136535|Q16650-2|TBR1 REV__nc|ENSG00000136535|Q16650-2|TBR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2824096679688 2 533.282389 1064.55022 0.7283 0.00038839 -0.59581 -0.00031774 0.13248 7.065E-05 533.2820797917628 90.257 1.4822 86.213 85.519 87.001 -4.0443 117 41 4 0 0 0 0.444 1 17130 17130 30.703 0.86286 1 10278000 + 22001 16337 14456 14461 21798 21798 0.020531352350417365 KADEAAGPPLP 11 Unmodified _KADEAAGPPLP_ 0 0 0 REV__nc|ENSG00000136535|Q16650-2|TBR1 REV__nc|ENSG00000136535|Q16650-2|TBR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.282470703125 2 533.282389 1064.55022 0.23043 0.00012289 -0.12183 -6.4969E-05 0.1086 5.7916E-05 533.2823100455149 89.907 1.4737 86.129 85.484 86.958 -3.7779 122 41 4 0 0 0 0.53127 1 17146 17146 21.59 0.053175 1 11397000 + 22002 16337 14456 14461 21799 21799 0.020531352350417365 KADLIKKIIH 10 Unmodified _KADLIKKIIH_ 0 0 0 REV__tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1 REV__tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2534790039062 2 589.884616 1177.75468 NaN NaN NaN NaN NaN NaN NaN 86.92 1 83.193 82.693 83.693 -3.727 0 0 0 0.22588 1 16994 16994 8.7454 0.15213 1 + 22003 25238 14457 14462 21800 21800 0.17291119116225673 KADPKISKRRP 11 Unmodified _KADPKISKRRP_ 0 0 0 ENST00000540344.5_1_12:498593-542579:+|nuORF;nc|ENSG00000120647|Q9BR77-2|CCDC77;ENSG00000120647|ENST00000239830|CCDC77 ENST00000540344.5_1_12:498593-542579:+|nuORF ENST00000540344.5_1_12:498593-542579:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 648.0156860351562 2 648.398953 1294.78335 NaN NaN NaN NaN NaN NaN NaN 168.38 1 168.38 167.88 168.88 0 0 0 0 0.23379 1 34477 34477 5.2969 0.39987 1 22004 3142 14458 14463 21801 21801 0.14775236745367692 KADSYVLEY 9 Unmodified _KADSYVLEY_ 0 0 0 ENSG00000152503|ENST00000513154|TRIM36;nc|ENSG00000152503|Q9NQ86|TRIM36 ENSG00000152503|ENST00000513154|TRIM36 ENSG00000152503|ENST00000513154|TRIM36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7776489257812 2 544.268947 1086.52334 0.22418 0.00012201 0.097561 5.3099E-05 0.32174 0.00017511 544.2688855947763 93.795 1.1055 89.804 89.278 90.384 -3.9907 56 23 3 0 0 0 0.096119 2 18386 18345;18386 61.602 25.475 1 9283700 22005 4927 14459 14464 21802;21803 21803 -0.016459733761621465 KADSYVLEY 9 Unmodified _KADSYVLEY_ 0 0 0 ENSG00000152503|ENST00000513154|TRIM36;nc|ENSG00000152503|Q9NQ86|TRIM36 ENSG00000152503|ENST00000513154|TRIM36 ENSG00000152503|ENST00000513154|TRIM36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.786865234375 2 544.268947 1086.52334 0.23004 0.00012521 -0.018037 -9.8168E-06 0.21201 0.00011539 544.2688815200014 93.772 0.82094 89.629 89.245 90.066 -4.1435 55 22 3 0 0 0 0.15926 1 17855 17855 53.404 13.454 1 9646300 22006 4927 14459 14464 21804 21804 -0.016459733761621465 KADSYVLEY 9 Unmodified _KADSYVLEY_ 0 0 0 ENSG00000152503|ENST00000513154|TRIM36;nc|ENSG00000152503|Q9NQ86|TRIM36 ENSG00000152503|ENST00000513154|TRIM36 ENSG00000152503|ENST00000513154|TRIM36 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7954711914062 2 544.268947 1086.52334 0.14129 7.69E-05 -0.011323 -6.1626E-06 0.12997 7.0737E-05 544.2688165711695 93.526 1.0364 89.682 89.26 90.296 -3.844 59 20 4 0 0 0 0.34246 1 17960 17960 40.239 2.0636 1 8635500 22007 4927 14459 14464 21805 21805 -0.016459733761621465 KADTEEEFL 9 Unmodified _KADTEEEFL_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2736206054688 2 541.256037 1080.49752 0.16103 8.7156E-05 0.12047 6.5203E-05 0.28149 0.00015236 541.2559936680756 83.01 0.76072 79.137 78.74 79.501 -3.8736 58 21 3 0 0 0 0.046332 1 15761 15761 74.216 59.229 1 10891000 22008 528 14460 14465 21806 21806 -0.03950867618414122 KADTEEEFL 9 Unmodified _KADTEEEFL_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2838745117188 2 541.256037 1080.49752 -0.021385 -1.1575E-05 0.22651 0.0001226 0.20512 0.00011102 541.2560829151807 82.824 0.79247 79.126 78.728 79.521 -3.6985 61 22 3 0 0 0 0.19171 1 15863 15863 38.176 2.0485 1 12572000 22009 528 14460 14465 21807 21807 -0.03950867618414122 KADTLKERY 9 Unmodified _KADTLKERY_ 0 0 0 CSNK1G3|p.E297*|1|0.21|ENSG00000151292|chr5:123590449-123590450|-/T|frameshift_variant;nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3 CSNK1G3|p.E297*|1|0.21|ENSG00000151292|chr5:123590449-123590450|-/T|frameshift_variant CSNK1G3|p.E297*|1|0.21|ENSG00000151292|chr5:123590449-123590450|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21063232421875 3 375.208384 1122.60332 -0.22221 -8.3375E-05 1.4676 0.00055065 1.2454 0.00046727 375.2087235625191 17.934 0.35835 17.934 17.803 18.161 0 21 9 3 0 0 0 0.5428 1 2841 2841 4.897 1.8247 1 3995800 22010 731 14461 14466 21808 21808 0.04692513017721467 KADTLKERY 9 Unmodified _KADTLKERY_ 0 0 0 CSNK1G3|p.E297*|1|0.21|ENSG00000151292|chr5:123590449-123590450|-/T|frameshift_variant;nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3 CSNK1G3|p.E297*|1|0.21|ENSG00000151292|chr5:123590449-123590450|-/T|frameshift_variant CSNK1G3|p.E297*|1|0.21|ENSG00000151292|chr5:123590449-123590450|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2086181640625 3 375.208384 1122.60332 -0.11602 -4.3531E-05 1.251 0.00046937 1.1349 0.00042584 375.2087880083219 19.406 0.32446 18.01 17.848 18.173 -1.3966 22 8 4 0 0 0 0.25976 1 3192 3192 19.626 12.149 1 4033500 22011 731 14461 14466 21809 21809 0.04692513017721467 KADVEEEFL 9 Unmodified _KADVEEEFL_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2693481445312 2 540.266404 1078.51826 0.69049 0.00037305 -0.37297 -0.00020151 0.31752 0.00017155 540.2661157673954 102.34 0.97955 102.34 101.78 102.76 0 80 27 4 0 0 0 0.24263 1 20101 20101 34.932 6.4452 1 30000000 22012 528 14462 14467 21810 21810 -0.017862772387616133 KADVEEEFL 9 Unmodified _KADVEEEFL_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.269287109375 2 540.266404 1078.51826 -0.16682 -9.0128E-05 0.56731 0.0003065 0.40049 0.00021637 540.2665570562128 106.41 0.84464 102.14 101.72 102.57 -4.2638 77 23 4 0 0 0 0.094316 1 20973 20973 57.722 15.627 1 19424000 22013 528 14462 14467 21811 21811 -0.017862772387616133 KADVEEEFL 9 Unmodified _KADVEEEFL_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.269287109375 2 540.266404 1078.51826 0.1239 6.6937E-05 0.21124 0.00011413 0.33514 0.00018106 540.2663952552869 106.53 0.85987 102.15 101.68 102.54 -4.3764 80 24 4 0 0 0 0.11828 1 20416 20416 49.554 9.6046 1 24537000 22014 528 14462 14467 21812 21812 -0.017862772387616133 KADVEEEFL 9 Unmodified _KADVEEEFL_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.269287109375 2 540.266404 1078.51826 0.80772 0.00043638 -0.39226 -0.00021193 0.41546 0.00022446 540.2659815954812 106.29 0.93005 102.2 101.67 102.6 -4.0913 79 26 4 0 0 0 0.13932 1 20422 20422 45.7 1.2926 1 19255000 22015 528 14462 14467 21813 21813 -0.017862772387616133 KADVQSIIGL 10 Unmodified _KADVQSIIGL_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27099609375 2 522.308406 1042.60226 -0.62543 -0.00032667 0.82247 0.00042958 0.19704 0.00010292 522.3086200061368 136.93 0.73801 132.01 131.74 132.47 -4.9216 37 20 3 0 0 0 0.086469 1 26311 26311 65.474 1.5132 1 2862800 22016 3631 14463 14468 21814 21814 0.08266298648823067 KADVQSIIGL 10 Unmodified _KADVQSIIGL_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2575073242188 2 522.308406 1042.60226 0.28481 0.00014876 -0.79778 -0.00041669 -0.51297 -0.00026793 522.307963273784 136.97 0.69237 132.13 131.79 132.48 -4.84 26 19 2 0 0 0 0.097483 2 26365 26350;26365 61.09 5.5872 1 2369100 22017 3631 14463 14468 21815;21816 21816 0.08266298648823067 KAEDEYEY 8 Unmodified _KAEDEYEY_ 0 0 0 REV__USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant REV__USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.690673828125 2 523.719287 1045.42402 NaN NaN NaN NaN NaN NaN NaN 116.64 1 112.28 111.78 112.78 -4.3585 0 0 0 0.21486 1 22453 22453 5.7604 0.52976 1 + 22018 14127 14464 14469 21817 21817 -0.09687416060910436 KAEILTCEH 9 Unmodified _KAEILTCEH_ 0 0 0 PPARA|p.I195Rfs*4|1|0.26|ENSG00000186951|chr22:46219886-46219887|AT/-|frameshift_variant;ENST00000493286.1_1_22:46594271-46615974:+|nuORF;PPARA|p.M430Wfs*8|1|0.27|ENSG00000186951|chr22:46235256-46235256|A/-|frameshift_variant;ENSG00000186951|ENST00000407236|PPARA PPARA|p.I195Rfs*4|1|0.26|ENSG00000186951|chr22:46219886-46219887|AT/-|frameshift_variant PPARA|p.I195Rfs*4|1|0.26|ENSG00000186951|chr22:46219886-46219887|AT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2643432617188 2 522.263142 1042.51173 NaN NaN NaN NaN NaN NaN NaN 37.254 1 34.906 34.406 35.406 -2.3479 0 0 0 0.19643 1 6604 6604 0.12781 0 1 22019 7085 14465 14470 21818 21818 -0.007824936711358532 KAEPYHFRFD 10 Unmodified _KAEPYHFRFD_ 0 0 0 REV__TMEM145|p.R62H|1|0.12|ENSG00000167619|chr19:42314336-42314336|G/A|missense_variant REV__TMEM145|p.R62H|1|0.12|ENSG00000167619|chr19:42314336-42314336|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2270812988281 3 437.21565 1308.62512 NaN NaN NaN NaN NaN NaN NaN 117.08 1 112.72 112.22 113.22 -4.3585 0 0 0 2.8426 1 22537 22537 0.043787 0 1 + 22020 24815 14466 14471 21819 21819 -0.016846822337583944 KAERYREWLYR 11 Unmodified _KAERYREWLYR_ 0 0 0 REV__ENSG00000111696|ENST00000392876|NT5DC3 REV__ENSG00000111696|ENST00000392876|NT5DC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3992919921875 2 785.417874 1568.82119 NaN NaN NaN NaN NaN NaN NaN 168.34 1 163.45 162.95 163.95 -4.8916 0 0 0 0.23519 1 33179 33179 4.1895 1.4543 1 + 22021 15257 14467 14472 21820 21820 0.05953702940178118 KAFEEAEKN 9 Unmodified _KAFEEAEKN_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2750244140625 2 533.264196 1064.51384 0.44829 0.00023906 -0.60661 -0.00032348 -0.15832 -8.4427E-05 533.2637010871246 33.748 0.35059 31.532 31.319 31.67 -2.2158 13 9 2 0 0 0 0.63318 1 5921 5921 0.073264 0 1 646190 22022 5615 14468 14473 21821 21821 -0.015837416616705013 KAFEKELSHA 10 Unmodified _KAFEKELSHA_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7224426269531 3 387.208384 1158.60332 0.81688 0.0003163 -0.4857 -0.00018807 0.33119 0.00012824 387.54254487738325 26.826 0.33685 25.044 24.828 25.165 -1.7821 12 9 2 0 0 0 0.88998 1 4740 4740 10.315 5.5993 1 497440 22023 4062 14469 14474 21822 21822 0.030365130177187893 KAFEKELSHA 10 Unmodified _KAFEKELSHA_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7096252441406 3 387.208384 1158.60332 -0.55142 -0.00021351 0.59302 0.00022962 0.0416 1.6108E-05 387.2087109077609 26.887 0.21313 24.965 24.841 25.054 -1.9222 8 5 2 0 0 0 0.91149 1 4472 4472 5.7834 4.1912 1 359900 22024 4062 14469 14474 21823 21823 0.030365130177187893 KAFHDQHFG 9 Unmodified _KAFHDQHFG_ 0 0 0 NPC1L1|p.L475Sfs*35|2|0.12|ENSG00000015520|chr7:44538974-44538974|G/-|frameshift_variant;nc|ENSG00000015520|Q9UHC9-3|NPC1L1;nc|ENSG00000015520|Q9UHC9-4|NPC1L1;nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1 NPC1L1|p.L475Sfs*35|2|0.12|ENSG00000015520|chr7:44538974-44538974|G/-|frameshift_variant NPC1L1|p.L475Sfs*35|2|0.12|ENSG00000015520|chr7:44538974-44538974|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.780029296875 2 543.759415 1085.50428 NaN NaN NaN NaN NaN NaN NaN 150.7 1 145.5 145 146 -5.1994 0 0 0 0.19636 1 29204 29204 2.4985 2.4951 1 22025 1112 14470 14475 21824 21824 -0.03505465156558785 KAFNRCSH 8 Unmodified _KAFNRCSH_ 0 0 0 nc|ENSG00000197124|O95780-2|ZNF682;ENST00000421406.1_1_1:247353282-247372753:-|nuORF;nc|ENSG00000197124|O95780-3|ZNF682;ENSG00000197124|ENST00000397165|ZNF682 nc|ENSG00000197124|O95780-2|ZNF682 nc|ENSG00000197124|O95780-2|ZNF682 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7740478515625 2 481.734886 961.455219 NaN NaN NaN NaN NaN NaN NaN 102.42 1 98.235 97.735 98.735 -4.1861 0 0 0 0.23025 1 20129 20129 0.62683 0 1 22026 7332 14471 14476 21825 21825 -0.027050767171317602 KAFSNCSLPQ 10 Unmodified _KAFSNCSLPQ_ 0 0 0 ENSG00000128203|ENST00000215906|ASPHD2 ENSG00000128203|ENST00000215906|ASPHD2 ENSG00000128203|ENST00000215906|ASPHD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7698974609375 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 90.57 1 86.526 86.026 87.026 -4.0443 0 0 0 0.22519 1 17253 17253 22.658 7.8198 1 22027 3511 14472 14477 21826 21826 -0.020390912968423436 KAHKEEGY 8 Unmodified _KAHKEEGY_ 0 0 0 REV__ENSG00000169519|ENST00000407364|METTL15 REV__ENSG00000169519|ENST00000407364|METTL15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23883056640625 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 138.14 1 133.5 133 134 -4.6413 0 0 0 0.22834 1 27270 27270 3.5871 1.8448 1 + 22028 18108 14473 14478 21827 21827 -0.015319761420073519 KAHLNCKC 8 Unmodified _KAHLNCKC_ 0 0 0 REV__NTNG2|p.N294K|1|0.26|ENSG00000196358|chr9:132226873-132226873|C/A|missense_variant REV__NTNG2|p.N294K|1|0.26|ENSG00000196358|chr9:132226873-132226873|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.25054931640625 3 306.154569 915.441877 NaN NaN NaN NaN NaN NaN NaN 4.8936 1 4.8936 4.3936 5.3936 0 0 0 0 0.21486 1 175 175 0.45834 0 1 + 22029 24387 14474 14479 21828 21828 -0.019226508207339066 KAHVLVTQL 9 Unmodified _KAHVLVTQL_ 0 0 0 ENST00000417499.1_1_16:299599-304410:+|nuORF ENST00000417499.1_1_16:299599-304410:+|nuORF ENST00000417499.1_1_16:299599-304410:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.8688049316406 3 336.878198 1007.61277 NaN NaN NaN NaN NaN NaN NaN 9.199 1 8.1643 7.6643 8.6643 -1.0347 0 0 0 0.23508 1 919 919 0.23584 0 1 22030 9630 14475 14480 21829 21829 0.10926326093908756 KAIFKPFK 8 Unmodified _KAIFKPFK_ 0 0 0 REV__CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant REV__CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2746276855469 2 489.810388 977.606223 NaN NaN NaN NaN NaN NaN NaN 158.87 1 158.87 158.37 159.37 0 0 0 0 0.21486 1 31900 31900 2.3027 0 1 + 22031 13243 14476 14481 21830 21830 0.1165243293318099 KAIIALVIILL 11 Unmodified _KAIIALVIILL_ 0 0 0 REV__ENSG00000213401|ENST00000393869|MAGEA12 REV__ENSG00000213401|ENST00000393869|MAGEA12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.26025390625 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 147.46 1 147.46 146.96 147.96 0 0 0 0 0.22632 1 29495 29495 0.0059557 0 1 + 22032 19639 14477 14482 21831 21831 0.2543522147532258 KAKAIKLILL 10 Unmodified _KAKAIKLILL_ 0 0 0 ENSG00000168329|ENST00000399220|CX3CR1;nc|ENSG00000168329|P49238-3|CX3CR1;nc|ENSG00000168329|P49238-4|CX3CR1;nc|ENSG00000168329|P49238-2|CX3CR1 ENSG00000168329|ENST00000399220|CX3CR1 ENSG00000168329|ENST00000399220|CX3CR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 555.7879028320312 2 555.902277 1109.79 NaN NaN NaN NaN NaN NaN NaN 163.14 1 158.35 157.85 158.85 -4.7898 0 0 0 2.8426 1 32503 32503 0.13989 0.13851 1 22033 5897 14478 14483 21832 21832 0.2394978164402346 KAKAIKLILLV 11 Unmodified _KAKAIKLILLV_ 0 0 0 ENSG00000168329|ENST00000399220|CX3CR1;nc|ENSG00000168329|P49238-3|CX3CR1;nc|ENSG00000168329|P49238-4|CX3CR1;nc|ENSG00000168329|P49238-2|CX3CR1 ENSG00000168329|ENST00000399220|CX3CR1 ENSG00000168329|ENST00000399220|CX3CR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 605.3822631835938 2 605.436484 1208.85842 NaN NaN NaN NaN NaN NaN NaN 165.05 1 165.05 164.55 165.55 0 0 0 0 0.23698 1 33449 33449 2.9952 1.5133 1 22034 5897 14479 14484 21833 21833 0.2623402622386948 KAKAIKLILLV 11 Unmodified _KAKAIKLILLV_ 0 0 0 ENSG00000168329|ENST00000399220|CX3CR1;nc|ENSG00000168329|P49238-3|CX3CR1;nc|ENSG00000168329|P49238-4|CX3CR1;nc|ENSG00000168329|P49238-2|CX3CR1 ENSG00000168329|ENST00000399220|CX3CR1 ENSG00000168329|ENST00000399220|CX3CR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 404.1600036621094 3 403.960082 1208.85842 NaN NaN NaN NaN NaN NaN NaN 179.51 1 174.65 174.15 175.15 -4.868 0 0 0 0.23698 1 35765 35765 0.094841 0.094841 1 22035 5897 14479 14484 21834 21834 0.2623402622386948 KAKGKGKKKA 10 Unmodified _KAKGKGKKKA_ 0 0 0 TULP1|p.Q301Rfs*9|1|0.43|ENSG00000112041|chr6:35506101-35506101|G/-|frameshift_variant;nc|ENSG00000112041|O00294-2|TULP1;ENSG00000112041|ENST00000229771|TULP1 TULP1|p.Q301Rfs*9|1|0.43|ENSG00000112041|chr6:35506101-35506101|G/-|frameshift_variant TULP1|p.Q301Rfs*9|1|0.43|ENSG00000112041|chr6:35506101-35506101|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2730712890625 2 522.356025 1042.6975 NaN NaN NaN NaN NaN NaN NaN 163.91 1 159.12 158.62 159.62 -4.7898 0 0 0 2.8426 1 32712 32712 0.26539 0 1 22036 2665 14480 14485 21835 21835 0.17785696630494385 KAKKAKKA 8 Unmodified _KAKKAKKA_ 0 0 0 ENSG00000100425|ENST00000404760|BRD1;nc|ENSG00000100425|O95696|BRD1;ENST00000494833.1_1_22:50214627-50216774:-|nuORF ENSG00000100425|ENST00000404760|BRD1 ENSG00000100425|ENST00000404760|BRD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2284851074219 2 436.805637 871.596721 -1.7869 -0.00078054 1.5924 0.00069555 -0.19458 -8.4992E-05 436.80621793214203 13.536 0.20191 12.325 12.241 12.443 -1.2106 6 5 2 0 0 0 1.0273 1 1739 1739 0.6015 0 1 196180 22037 1977 14481 14486 21836 21836 0.15578664647648566 KAKKKIHKL 9 Unmodified _KAKKKIHKL_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L;REV__nc|ENSG00000147133|P21675-23|TAF1 REV__ENSG00000122728|ENST00000242310|TAF1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7822875976562 2 547.382043 1092.74953 0.33168 0.00018155 -1.0274 -0.00056239 -0.69573 -0.00038083 547.3832455665747 141.41 0.099731 141.41 141.36 141.46 0 4 2 2 0 0 0 0.88278 1 28178 28178 2.0598 1.659 1 2873200 + 22038 15703;16921 14482 14487 21837 21837 0.2068686004427036 KAKKKKKKK 9 Unmodified _KAKKKKKKK_ 0 0 0 ENSG00000189134|ENST00000343684|NKAPL;ENST00000359543.7_1_16:10626568-10626661:-|nuORF ENSG00000189134|ENST00000343684|NKAPL;REV__ENSG00000130826|ENST00000369550|DKC1 REV__ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 558.01904296875 2 557.910968 1113.80738 NaN NaN NaN NaN NaN NaN NaN 164.77 1 159.7 159.2 160.2 -5.0648 0 0 0 0.23508 1 32155 32155 1.6526 0 1 22039 7216;16034 14483 14488 21838 21838 0.2550312196970026 KAKKKLKRKKK 11 Unmodified _KAKKKLKRKKK_ 0 0 0 REV__ENSG00000157895|ENST00000288757|C12orf43 REV__ENSG00000157895|ENST00000288757|C12orf43 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53631591796875 3 462.004796 1382.99256 NaN NaN NaN NaN NaN NaN NaN 150.03 1 150.03 149.53 150.53 0 0 0 0 0.23698 1 30033 30033 0.08335 0.08335 1 + 22040 17314 14484 14489 21839 21839 0.31638104769285746 KAKLLLTK 8 Unmodified _KAKLLLTK_ 0 0 0 REV__ENST00000322831.6_1_9:37126888-37186735:+|nuORF REV__ENST00000322831.6_1_9:37126888-37186735:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2324523925781 2 457.823495 913.632438 NaN NaN NaN NaN NaN NaN NaN 13.242 1 13.242 12.742 13.742 0 0 0 0 0.21486 1 1897 1897 0.69038 0 1 + 22041 20561 14485 14490 21840 21840 0.1721670210463344 KAKNILKF 8 Unmodified _KAKNILKF_ 0 0 0 tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1 tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1 tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.31134033203125 2 481.313295 960.612037 NaN NaN NaN NaN NaN NaN NaN 160.66 1 155.87 155.37 156.37 -4.7952 0 0 0 0.2343 1 31951 31951 1.7423 1.0609 1 22042 26131 14486 14491 21841 21841 0.130155314448416 KAKPHKTTIA 10 Unmodified _KAKPHKTTIA_ 0 0 0 ENSG00000119457|ENST00000374228|SLC46A2 ENSG00000119457|ENST00000374228|SLC46A2 ENSG00000119457|ENST00000374228|SLC46A2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7759399414062 2 547.837665 1093.66078 NaN NaN NaN NaN NaN NaN NaN 155.3 1 150.02 149.52 150.52 -5.2854 0 0 0 2.8426 1 30124 30124 0.063865 0.055588 1 22043 3078 14487 14492 21842 21842 0.11769400013940867 KAKPIKIKLSG 11 Unmodified _KAKPIKIKLSG_ 0 0 0 ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant;ENSG00000171467|ENST00000361428|ZNF318 ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 591.9935913085938 2 591.900266 1181.78598 NaN NaN NaN NaN NaN NaN NaN 165.73 1 160.75 160.25 161.25 -4.9811 0 0 0 0.23429 1 32417 32417 4.897 0 1 22044 6145 14488 14493 21843 21843 0.20235692150299656 KAKRKSTAA 9 Unmodified _KAKRKSTAA_ 0 0 0 nc|ENSG00000214193|A4FU49-4|SH3D21 nc|ENSG00000214193|A4FU49-4|SH3D21 nc|ENSG00000214193|A4FU49-4|SH3D21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77630615234375 2 480.801083 959.587613 -0.0080674 -3.8788E-06 0.32618 0.00015683 0.31811 0.00015295 480.8011229832304 155.13 0.94371 155.13 154.71 155.66 0 65 26 3 0 0 0 0.48181 1 31029 31029 0.96228 0.96228 1 23163000 22045 12592 14489 14494 21844 21844 0.1062027129131593 KAKRKSTAA 9 Unmodified _KAKRKSTAA_ 0 0 0 nc|ENSG00000214193|A4FU49-4|SH3D21 nc|ENSG00000214193|A4FU49-4|SH3D21 nc|ENSG00000214193|A4FU49-4|SH3D21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77874755859375 2 480.801083 959.587613 0.21238 0.00010211 0.084511 4.0633E-05 0.29689 0.00014275 480.80102169434616 160.34 0.95694 155.54 155.12 156.07 -4.7952 66 26 3 0 0 0 0.56709 1 31943 31943 0.12781 0 1 20750000 22046 12592 14489 14494 21845 21845 0.1062027129131593 KALACLVPD 9 Unmodified _KALACLVPD_ 0 0 0 REV__nc|ENSG00000196139|P42330-2|AKR1C3 REV__nc|ENSG00000196139|P42330-2|AKR1C3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2579650878906 2 465.259871 928.505189 NaN NaN NaN NaN NaN NaN NaN 61.36 1 58.398 57.898 58.898 -2.9614 0 0 0 0.21065 1 11826 11826 20.454 4.6064 1 + 22047 17076 14490 14495 21846 21846 0.038076131681464176 KALEEEED 8 Unmodified _KALEEEED_ 0 0 0 DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1 DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77197265625 2 481.719287 961.424021 NaN NaN NaN NaN NaN NaN NaN 156.54 1 156.54 156.04 157.04 0 0 0 0 0.2343 1 31407 31407 1.4551 0 1 22048 837 14491 14496 21847 21847 -0.05823416060900399 KALETHLLNL 10 Unmodified _KALETHLLNL_ 0 0 0 REV__APPL2|p.K407Nfs*11|1|0.39|ENSG00000136044|chr12:105195281-105195281|T/-|frameshift_variant REV__APPL2|p.K407Nfs*11|1|0.39|ENSG00000136044|chr12:105195281-105195281|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3274536132812 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 162.87 1 158.08 157.58 158.58 -4.7898 0 0 0 2.8426 1 32428 32428 1.9275 1.0523 1 + 22049 13088 14492 14497 21848 21848 0.10169962948543798 KALFLFVLK 9 Unmodified _KALFLFVLK_ 0 0 0 REV__ENST00000306954.4_1_14:93669861-93669912:-|nuORF REV__ENST00000306954.4_1_14:93669861-93669912:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016906738281 3 360.238956 1077.69504 NaN NaN NaN NaN NaN NaN NaN 4.5699 1 3.53 3.03 4.03 -1.04 0 0 0 0.23508 1 117 117 0.26902 0 1 + 22050 20444 14493 14498 21849 21849 0.15929848172845595 KALFPIQY 8 Unmodified _KALFPIQY_ 0 0 0 REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1 REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2740478515625 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 72.836 1 69.209 68.709 69.709 -3.6275 0 0 0 0.21486 1 13760 13760 8.5933 1.304 1 + 22051 24707 14494 14499 21850 21850 0.06371849799563734 KALIIKLRHGK 11 Unmodified _KALIIKLRHGK_ 0 0 0 ZBTB21|p.R641H|1|0.32|ENSG00000173276|chr21:41992174-41992174|C/T|missense_variant ZBTB21|p.R641H|1|0.32|ENSG00000173276|chr21:41992174-41992174|C/T|missense_variant ZBTB21|p.R641H|1|0.32|ENSG00000173276|chr21:41992174-41992174|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.2908630371094 3 426.290713 1275.85031 NaN NaN NaN NaN NaN NaN NaN 158.01 1 152.74 152.24 153.24 -5.2748 0 0 0 0.23698 1 30668 30668 0.094841 0.011491 1 22052 26590 14495 14500 21851 21851 0.2234189202708876 KALLALLLIL 10 Unmodified _KALLALLLIL_ 0 0 0 nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8;ENST00000541225.5_1_17:66883094-66937097:-|nuORF;ABCA8|p.L1128*|1|0.37|ENSG00000141338|chr17:68885242-68885242|A/-|frameshift_variant;ENST00000590359.1_1_17:66890978-66899548:-|nuORF nc|ENSG00000141338|O94911-1|ABCA8 nc|ENSG00000141338|O94911-1|ABCA8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2647094726562 2 540.891378 1079.7682 0.1956 0.0001058 4.3941 0.0023767 4.5897 0.0024825 540.8930219024741 146.89 0.27856 141.78 141.68 141.96 -5.1108 10 7 2 0 0 0 0.91149 1 28402 28402 0.40072 0 1 2395100 22053 4355 14496 14501 21852 21852 0.2315097689547656 KALLALLLIL 10 Unmodified _KALLALLLIL_ 0 0 0 nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8;ENST00000541225.5_1_17:66883094-66937097:-|nuORF;ABCA8|p.L1128*|1|0.37|ENSG00000141338|chr17:68885242-68885242|A/-|frameshift_variant;ENST00000590359.1_1_17:66890978-66899548:-|nuORF nc|ENSG00000141338|O94911-1|ABCA8 nc|ENSG00000141338|O94911-1|ABCA8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2743530273438 2 540.891378 1079.7682 0.14497 7.8412E-05 2.0607 0.0011146 2.2056 0.001193 540.8916355468731 137.51 0.25031 132.59 132.44 132.69 -4.9216 11 6 3 0 0 0 1.1333 1 26444 26444 0.013265 0 1 3331600 22054 4355 14496 14501 21853 21853 0.2315097689547656 KALLLHLAVLL 11 Unmodified _KALLLHLAVLL_ 0 0 0 REV__ENST00000462410.5_1_1:211533229-211533703:+|nuORF REV__ENST00000462410.5_1_1:211533229-211533703:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2874145507812 2 602.413009 1202.81146 NaN NaN NaN NaN NaN NaN NaN 161.34 1 161.34 160.84 161.84 0 0 0 0 0.22632 1 32405 32405 0.11104 0.097776 1 + 22055 21903 14497 14502 21854 21854 0.21817166672758503 KALQLYLRKA 10 Unmodified _KALQLYLRKA_ 0 0 0 ENST00000434140.5_2_3:46717393-46723043:-|nuORF;ENST00000486301.5_1_3:46717393-46718248:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL ENST00000434140.5_2_3:46717393-46723043:-|nuORF ENST00000434140.5_2_3:46717393-46723043:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2817993164062 2 602.38224 1202.74993 0.39698 0.00023913 -0.097582 -5.8782E-05 0.29939 0.00018035 602.3822059404632 155.81 0.13551 155.81 155.73 155.87 0 5 3 2 0 0 0 1.1149 1 31249 31249 3.104 2.0388 1 3520800 22056 9817 14498 14503 21855 21855 0.1566623497344608 KALRAYAG 8 Unmodified _KALRAYAG_ 0 0 0 ENST00000434027.2_1_5:98106159-98115843:+|nuORF;RGMB|p.E393Gfs*29|1|0.64|ENSG00000174136|chr5:98793614-98793615|-/G|frameshift_variant;ENSG00000174136|ENST00000513185|RGMB ENST00000434027.2_1_5:98106159-98115843:+|nuORF ENST00000434027.2_1_5:98106159-98115843:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2508544921875 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 58.272 1 58.272 57.772 58.772 0 0 0 0 0.23711 1 11147 11147 0.62683 0.50396 1 22057 6332 14499 14504 21856 21856 0.05653239308469438 KALRIIVRI 9 Unmodified _KALRIIVRI_ 0 0 0 ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1 ENSG00000159692|ENST00000382952|CTBP1 ENSG00000159692|ENST00000382952|CTBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2752685546875 2 541.382043 1080.74953 0.31164 0.00016872 3.0007 0.0016245 3.3124 0.0017933 541.3841703274014 146.7 0.16957 146.7 146.64 146.81 0 5 4 2 0 0 0 0.79776 1 29336 29336 1.8442 0.19162 1 1258400 22058 5215 14500 14505 21857 21857 0.21238860044286412 KALRIKFA 8 Unmodified _KALRIKFA_ 0 0 0 REV__ENST00000553273.5_1_14:35591230-35591449:-|nuORF REV__ENST00000553273.5_1_14:35591230-35591449:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.17498779296875 3 316.2114 945.612371 NaN NaN NaN NaN NaN NaN NaN 69.375 1 65.839 65.339 66.339 -3.5362 0 0 0 0.21486 1 13060 13060 0.45834 0 1 + 22059 22957 14501 14506 21858 21858 0.1373895116470294 KALRVVKF 8 Unmodified _KALRVVKF_ 0 0 0 nc|ENSG00000116704|Q9NTN3-2|SLC35D1;ENSG00000116704|ENST00000235345|SLC35D1 nc|ENSG00000116704|Q9NTN3-2|SLC35D1 nc|ENSG00000116704|Q9NTN3-2|SLC35D1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24493408203125 2 480.821287 959.628021 NaN NaN NaN NaN NaN NaN NaN 137.7 1 133.06 132.56 133.56 -4.6413 0 0 0 0.21486 1 27182 27182 5.7604 0 1 22060 2946 14502 14507 21859 21859 0.14659237681757986 KALSKSKSN 9 Unmodified _KALSKSKSN_ 0 0 0 MYH13|p.E1240K|1|0.2|ENSG00000006788|chr17:10318810-10318810|C/T|missense_variant MYH13|p.E1240K|1|0.2|ENSG00000006788|chr17:10318810-10318810|C/T|missense_variant MYH13|p.E1240K|1|0.2|ENSG00000006788|chr17:10318810-10318810|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77862548828125 2 481.785099 961.555644 NaN NaN NaN NaN NaN NaN NaN 156.12 1 156.12 155.62 156.62 0 0 0 0 0.19674 1 31315 31315 0.87518 0 1 22061 12183 14503 14508 21860 21860 0.07332858817528631 KALTRLDKVK 10 Unmodified _KALTRLDKVK_ 0 0 0 REV__SPECC1L|p.L189R|1|0.1|ENSG00000100014|chr22:24321546-24321546|T/G|missense_variant REV__SPECC1L|p.L189R|1|0.1|ENSG00000100014|chr22:24321546-24321546|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 586.3607788085938 2 586.379697 1170.74484 NaN NaN NaN NaN NaN NaN NaN 167.19 1 162.24 161.74 162.74 -4.948 0 0 0 2.8426 1 32861 32861 3.8763 3.8631 1 + 22062 24729 14504 14509 21861 21861 0.1662993111083324 KAMKTIFNKA 10 Unmodified _KAMKTIFNKA_ 0 0 0 REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3294677734375 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 138.81 1 134.17 133.67 134.67 -4.6439 0 0 0 0.22588 1 27410 27410 11.495 2.1116 1 + 22063 16344 14505 14510 21862 21862 0.08394924422009353 KANLKEHQR 9 Unmodified _KANLKEHQR_ 0 0 0 ENSG00000204532|ENST00000534327|ZSCAN5C ENSG00000204532|ENST00000534327|ZSCAN5C ENSG00000204532|ENST00000534327|ZSCAN5C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2157897949219 3 375.215873 1122.62579 NaN NaN NaN NaN NaN NaN NaN 12.848 1 11.719 11.219 12.219 -1.1293 0 0 0 0.19631 1 1615 1615 0.0033805 0 1 22064 7586 14506 14511 21863 21863 0.06938157205991047 KANRGFIR 8 Unmodified _KANRGFIR_ 0 0 0 ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23590087890625 2 481.288143 960.561733 NaN NaN NaN NaN NaN NaN NaN 18.608 1 18.608 18.108 19.108 0 0 0 0 0.23664 1 3004 3004 3.2813 3.273 1 22065 3958 14507 14512 21864 21864 0.07987421839698072 KAPDEQGSM 9 Unmodified _KAPDEQGSM_ 0 0 0 nc|ENSG00000022976|A8K0R7|ZNF839;nc|ENSG00000022976|A8K0R7-2|ZNF839;ZNF839|p.Q768Rfs*33|1|0.25|ENSG00000022976|chr14:102342046-102342047|AG/-|frameshift_variant;ENSG00000022976|ENST00000442396|ZNF839 nc|ENSG00000022976|A8K0R7|ZNF839 nc|ENSG00000022976|A8K0R7|ZNF839 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2432861328125 2 481.716024 961.417496 0.0035279 1.6994E-06 -0.27369 -0.00013184 -0.27016 -0.00013014 481.71585027665765 125.54 0.67255 125.54 125.18 125.86 0 30 18 2 0 0 0 0.57447 1 24790 24790 14.838 6.9281 1 2451400 22066 1129 14508 14513 21865 21865 -0.0647563249325458 KAPFVVRG 8 Unmodified _KAPFVVRG_ 0 0 0 nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10 nc|ENSG00000143127|O75578-3|ITGA10 nc|ENSG00000143127|O75578-3|ITGA10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2293701171875 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 13.199 1 13.199 12.699 13.699 0 0 0 0 0.2396 1 1890 1890 0.0082765 0 1 22067 4454 14509 14514 21866 21866 0.0818611620518368 KAPIKPKLVIK 11 Unmodified _KAPIKPKLVIK_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 618.0451049804688 2 617.934109 1233.85366 NaN NaN NaN NaN NaN NaN NaN 164.82 1 164.82 164.32 165.32 0 0 0 0 0.22632 1 33375 33375 1.4551 1.2831 1 + 22068 17221 14510 14515 21867 21867 0.24609142081112623 KAPLGHVQ 8 Unmodified _KAPLGHVQ_ 0 0 0 REV__ENST00000354179.8_2_5:176721804-176722098:+|nuORF REV__ENST00000354179.8_2_5:176721804-176722098:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2511291503906 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 15.875 1 15.875 15.375 16.375 0 0 0 0 0.2396 1 2444 2444 0.30703 0 1 + 22069 20774 14511 14516 21868 21868 0.05653239308469438 KAPLKYMPPTK 11 Unmodified _KAPLKYMPPTK_ 0 0 0 tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1 tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1 tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2494812011719 3 425.249415 1272.72641 NaN NaN NaN NaN NaN NaN NaN 164.89 1 164.89 164.39 165.39 0 0 0 0 0.22501 1 33398 33398 6.6235 3.0364 1 22070 26003 14512 14517 21869 21869 0.10096053144593498 KAPLRLKLR 9 Unmodified _KAPLRLKLR_ 0 0 0 ENST00000554892.1_1_14:24028960-24029314:-|nuORF;ENST00000557391.1_1_14:24028960-24029655:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2 ENST00000554892.1_1_14:24028960-24029314:-|nuORF ENST00000554892.1_1_14:24028960-24029314:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7752685546875 2 547.879668 1093.74478 NaN NaN NaN NaN NaN NaN NaN 108.69 1 108.69 108.19 109.19 0 0 0 0 0.19626 1 21375 21375 0.029283 0 1 22071 7713 14513 14518 21870 21870 0.20165975901477395 KAPPGPQG 8 Unmodified _KAPPGPQG_ 0 0 0 REV__ENSG00000015133|ENST00000389857|CCDC88C REV__ENSG00000015133|ENST00000389857|CCDC88C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.2085876464844 2 376.208495 750.402438 NaN NaN NaN NaN NaN NaN NaN 54.391 1 51.507 51.007 52.007 -2.8837 0 0 0 0.23487 1 10380 10380 0.25148 0 1 + 22072 13957 14514 14519 21871 21871 0.01725288491718402 KAPQGVHL 8 Unmodified _KAPQGVHL_ 0 0 0 ENST00000493548.5_1_6:32122153-32123690:+|nuORF;nc|ENSG00000258388|Q9UMR5-2|PPT2;ENSG00000221988|ENST00000324816|PPT2;nc|ENSG00000258388|Q9UMR5-3|PPT2 ENST00000493548.5_1_6:32122153-32123690:+|nuORF ENST00000493548.5_1_6:32122153-32123690:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2494812011719 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 164.88 1 164.88 164.38 165.38 0 0 0 0 0.22684 1 33390 33390 0.68139 0 1 22073 7770 14515 14520 21872 21872 0.05653239308469438 KAPSALAES 9 Unmodified _KAPSALAES_ 0 0 0 REV__RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant REV__RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2356262207031 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 64.66 1 61.377 60.877 61.877 -3.2832 0 0 0 0.22621 1 12141 12141 15.847 5.0233 1 + 22074 17673 14516 14521 21873 21873 0.019015056264720442 KAPVKLLFLH 10 Unmodified _KAPVKLLFLH_ 0 0 0 REV__ENSG00000186648|ENST00000342740|CARMIL3 REV__ENSG00000186648|ENST00000342740|CARMIL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 389.8668518066406 3 389.253376 1164.7383 0.35084 0.00013657 0.88823 0.00034575 1.2391 0.00048232 389.25365079924745 88.267 0.86856 84.272 83.868 84.736 -3.9953 63 24 3 0 0 0 0.52989 1 16858 16858 0.26539 0.26539 1 6355900 + 22075 19045 14517 14522 21874 21874 0.16252037950107479 KAPVKLLFLH 10 Unmodified _KAPVKLLFLH_ 0 0 0 REV__ENSG00000186648|ENST00000342740|CARMIL3 REV__ENSG00000186648|ENST00000342740|CARMIL3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 389.253376 1164.7383 -0.29168 -0.00011354 1.5647 0.00060906 1.273 0.00049553 389.25392386504404 88.044 0.96796 84.252 83.906 84.874 -3.7926 -0.041862 0.00011819 NaN 0.26539 70 26 3 NaN NaN NaN NaN 0 NaN NaN 0 6032000 + 22076 19045 14517 14522 0.16252037950107479 KAPVKLLFLH 10 Unmodified _KAPVKLLFLH_ 0 0 0 REV__ENSG00000186648|ENST00000342740|CARMIL3 REV__ENSG00000186648|ENST00000342740|CARMIL3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 389.253376 1164.7383 -0.45388 -0.00017667 1.7746 0.00069077 1.3207 0.00051409 389.5883822389031 88.107 0.87271 84.357 83.836 84.709 -3.7501 0.063597 0.0003633 NaN 0.26539 58 24 3 NaN NaN NaN NaN 0 NaN NaN 0 4018600 + 22077 19045 14517 14522 0.16252037950107479 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 441.2447204589844 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 12.838 1 12.838 12.338 13.338 0 0 0 0 0.22632 1 1815 1815 0 0 1 22078 9183 14518 14523 21875 21875 0.22417277055819795 KAQKIEMDT 9 Unmodified _KAQKIEMDT_ 0 0 0 SAP30BP|p.K210T|1|0.57|ENSG00000161526|chr17:75704783-75704783|A/C|missense_variant SAP30BP|p.K210T|1|0.57|ENSG00000161526|chr17:75704783-75704783|A/C|missense_variant SAP30BP|p.K210T|1|0.57|ENSG00000161526|chr17:75704783-75704783|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.26513671875 2 532.276249 1062.53795 -0.071792 -3.8213E-05 -1.1007 -0.00058585 -1.1725 -0.00062407 532.2746057433005 57.015 0.62664 54.121 53.786 54.413 -2.8944 55 17 4 0 0 0 0.48644 1 10941 10941 20.454 4.3045 1 5133300 22079 25635 14519 14524 21876 21876 0.00917775500352036 KAQKIEMDT 9 Unmodified _KAQKIEMDT_ 0 0 0 SAP30BP|p.K210T|1|0.57|ENSG00000161526|chr17:75704783-75704783|A/C|missense_variant SAP30BP|p.K210T|1|0.57|ENSG00000161526|chr17:75704783-75704783|A/C|missense_variant SAP30BP|p.K210T|1|0.57|ENSG00000161526|chr17:75704783-75704783|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2632446289062 2 532.276249 1062.53795 0.10228 5.4442E-05 -0.82776 -0.00044059 -0.72547 -0.00038615 532.2746135541951 57.283 0.7886 54.107 53.751 54.54 -3.1761 51 21 3 0 0 0 0.48644 1 10651 10651 20.454 1.1966 1 2451400 22080 25635 14519 14524 21877 21877 0.00917775500352036 KARFRGIFS 9 Unmodified _KARFRGIFS_ 0 0 0 ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2811279296875 2 541.3169 1080.61925 NaN NaN NaN NaN NaN NaN NaN 13.568 1 12.559 12.059 13.059 -1.0098 0 0 0 0.23508 1 1976 1976 3.5965 1.9439 1 22081 2582 14520 14525 21878 21878 0.08216264045267963 KARGTKKK 8 Unmodified _KARGTKKK_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 306.2065124511719 3 306.206538 915.597784 NaN NaN NaN NaN NaN NaN NaN 80.308 1 76.469 75.969 76.969 -3.8392 0 0 0 0.21486 1 15240 15240 0.45834 0 1 + 22082 23528 14521 14526 21879 21879 0.13660879016561012 KARIFEAK 8 Unmodified _KARIFEAK_ 0 0 0 REV__nc|ENSG00000139436|Q14161-11|GIT2 REV__nc|ENSG00000139436|Q14161-11|GIT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7783508300781 2 481.792727 961.5709 NaN NaN NaN NaN NaN NaN NaN 160.77 1 155.54 155.04 156.04 -5.2299 0 0 0 0.22699 1 31219 31219 2.643 0 1 + 22083 16517 14522 14527 21880 21880 0.08857770405359133 KARIREEY 8 Unmodified _KARIREEY_ 0 0 0 ENSG00000133574|ENST00000255945|GIMAP4 ENSG00000133574|ENST00000255945|GIMAP4 ENSG00000133574|ENST00000255945|GIMAP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.0743408203125 3 355.533091 1063.57744 0.037668 1.3392E-05 -0.23543 -8.3703E-05 -0.19776 -7.0311E-05 355.53299754298865 50.072 0.60938 47.073 46.727 47.337 -2.999 28 17 3 0 0 0 1.0254 1 9097 9097 0.35063 0 1 1565700 22084 3808 14523 14528 21881 21881 0.048196635660815446 KARKRPRPRTL 11 Unmodified _KARKRPRPRTL_ 0 0 0 REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1 REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23504638671875 3 460.300383 1377.87932 NaN NaN NaN NaN NaN NaN NaN 12.587 1 11.467 10.967 11.967 -1.1206 0 0 0 0.22632 1 1510 1510 0.094841 0 1 + 22085 14133 14524 14529 21882 21882 0.20549429376114858 KARLRRPRA 9 Unmodified _KARLRRPRA_ 0 0 0 REV__ENST00000355957.9_1_20:57226406-57226688:+|nuORF REV__ENST00000355957.9_1_20:57226406-57226688:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 562.3405151367188 2 562.36779 1122.72103 NaN NaN NaN NaN NaN NaN NaN 165.8 1 165.8 165.3 166.3 0 0 0 0 0.19657 1 33693 33693 4.897 4.8237 1 + 22086 20803 14525 14530 21883 21883 0.16457555187685102 KARQLFRRRRP 11 Unmodified _KARQLFRRRRP_ 0 0 0 REV__nc|ENSG00000106683|P53667-4|LIMK1 REV__nc|ENSG00000106683|P53667-4|LIMK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3765869140625 2 742.463284 1482.91202 NaN NaN NaN NaN NaN NaN NaN 168.65 1 168.65 168.15 169.15 0 0 0 0 0.23698 1 34559 34559 1.3295 0.9789 1 + 22087 23995 14526 14531 21884 21884 0.18987636498945903 KARRKKWIIIA 11 Unmodified _KARRKKWIIIA_ 0 0 0 ENSG00000111450|ENST00000392373|STX2 ENSG00000111450|ENST00000392373|STX2 ENSG00000111450|ENST00000392373|STX2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5388488769531 3 461.641746 1381.90341 NaN NaN NaN NaN NaN NaN NaN 14.456 1 13.283 12.783 13.783 -1.173 0 0 0 0.23698 1 1956 1956 0.094841 0.094841 1 22088 2622 14527 14532 21885 21885 0.22773269809795238 KASDLYITL 9 Unmodified _KASDLYITL_ 0 0 0 ENSG00000143418|ENST00000368954|CERS2 ENSG00000143418|ENST00000368954|CERS2 ENSG00000143418|ENST00000368954|CERS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 512.2604370117188 2 512.289682 1022.56481 -0.42444 -0.00021744 0.44146 0.00022616 0.01702 8.7194E-06 512.2897764626964 136.05 0.66838 131.16 130.78 131.45 -4.8951 40 18 3 0 0 0 0.15889 1 26104 26104 42.232 31.333 1 4517700 22089 4484 14528 14533 21886 21886 0.05443207383166282 KASDLYITL 9 Unmodified _KASDLYITL_ 0 0 0 ENSG00000143418|ENST00000368954|CERS2 ENSG00000143418|ENST00000368954|CERS2 ENSG00000143418|ENST00000368954|CERS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 512.289682 1022.56481 -0.12439 -6.3723E-05 0.37383 0.00019151 0.24944 0.00012779 512.2898851284297 135.78 0.59357 131.14 130.8 131.39 -4.6399 -0.011685 0.00016816 NaN 42.232 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 7579300 22090 4484 14528 14533 0.05443207383166282 KASDLYITL 9 Unmodified _KASDLYITL_ 0 0 0 ENSG00000143418|ENST00000368954|CERS2 ENSG00000143418|ENST00000368954|CERS2 ENSG00000143418|ENST00000368954|CERS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 512.289682 1022.56481 0.19077 9.773E-05 -0.40499 -0.00020747 -0.21422 -0.00010974 512.289509371072 135.99 0.64516 131.16 130.81 131.45 -4.8307 0.0056893 -0.00062981 NaN 42.232 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3539700 22091 4484 14528 14533 0.05443207383166282 KASQMVNSC 9 Unmodified _KASQMVNSC_ 0 0 0 ENSG00000135913|ENST00000258399|USP37;ENST00000473554.5_1_2:219337952-219344428:-|nuORF ENSG00000135913|ENST00000258399|USP37 ENSG00000135913|ENST00000258399|USP37 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1684875488281 3 323.149372 966.426286 NaN NaN NaN NaN NaN NaN NaN 61.239 1 58 57.5 58.5 -3.2395 0 0 0 0.23508 1 11462 11462 1.1933 0.735 1 22092 3964 14529 14534 21887 21887 -0.05826982128428426 KASRHKHT 8 Unmodified _KASRHKHT_ 0 0 0 nc|ENSG00000171649|Q3SY52-3|ZIK1;nc|ENSG00000171649|Q3SY52-2|ZIK1;ENST00000307468.4_1_19:58095687-58102640:+|nuORF;ENSG00000171649|ENST00000597850|ZIK1;ZIK1|p.G217R|1|0.28|ENSG00000171649|chr19:57590460-57590460|G/A|missense_variant nc|ENSG00000171649|Q3SY52-3|ZIK1 nc|ENSG00000171649|Q3SY52-3|ZIK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.2821350097656 3 322.186025 963.536246 NaN NaN NaN NaN NaN NaN NaN 4.1695 1 3.5432 3.0432 4.0432 -0.62626 0 0 0 0.21486 1 33 33 0.45834 0 1 22093 6158 14530 14535 21888 21888 0.05301947317275335 KATHQRSHWYK 11 Unmodified _KATHQRSHWYK_ 0 0 0 REV__ENST00000497403.5_1_2:10101229-10104576:+|nuORF REV__ENST00000497403.5_1_2:10101229-10104576:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2390441894531 3 481.253098 1440.73747 NaN NaN NaN NaN NaN NaN NaN 105.81 1 105.81 105.31 106.31 0 0 0 0 0.22632 1 20794 20794 3.0723 2.9003 1 + 22094 14448 14531 14536 21889 21889 0.034725915631270254 KATIFKVLN 9 Unmodified _KATIFKVLN_ 0 0 0 tr|U7SZV2|U7SZV2_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accDPE=3SV=1 tr|U7SZV2|U7SZV2_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accDPE=3SV=1 tr|U7SZV2|U7SZV2_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accDPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 345.2016906738281 3 345.218332 1032.63317 NaN NaN NaN NaN NaN NaN NaN 84.902 1 81.19 80.69 81.69 -3.7117 0 0 0 0.23508 1 16219 16219 1.9064 0.25375 1 22095 26304 14532 14537 21890 21890 0.11815496753729349 KATLLLNR 8 Unmodified _KATLLLNR_ 0 0 0 REV__ENST00000424834.6_1_13:24880993-24881062:+|nuORF REV__ENST00000424834.6_1_13:24880993-24881062:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 14.215 1 14.215 13.715 14.715 0 0 0 0 0.21486 1 2103 2103 3.2813 1.6287 1 + 22096 21549 14533 14538 21891 21891 0.11986056922410171 KATTIIIVE 9 Unmodified _KATTIIIVE_ 0 0 0 REV__ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant REV__ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 329.99725341796875 3 329.874342 986.601197 0.1625 5.3604E-05 1.0079 0.00033248 1.1704 0.00038608 329.87465117912956 63.129 0.50446 59.713 59.504 60.009 -3.4158 22 13 2 0 0 0 0.87609 1 11807 11807 4.5289 0.19963 1 1154200 + 22097 13061 14534 14539 21892 21892 0.10736084279915303 KATTIIIVE 9 Unmodified _KATTIIIVE_ 0 0 0 REV__ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant REV__ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 329.874342 986.601197 -0.20374 -6.7207E-05 1.5765 0.00052004 1.3727 0.00045283 329.8747885650797 62.677 0.55878 59.716 59.357 59.916 -2.9614 -0.0048668 9.4965E-05 NaN 4.5289 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2089300 + 22098 13061 14534 14539 0.10736084279915303 KATTIIIVE 9 Unmodified _KATTIIIVE_ 0 0 0 REV__ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant REV__ANKRD34B|p.P416Qfs*4|1|0.28|ENSG00000189127|chr5:80558773-80558773|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 329.874342 986.601197 -0.44698 -0.00014745 1.7761 0.00058587 1.3291 0.00043843 329.87483413175795 62.99 0.62111 59.734 59.401 60.022 -3.2567 0.012666 0.00029248 NaN 4.5289 31 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1448300 + 22099 13061 14534 14539 0.10736084279915303 KATTRLTR 8 Unmodified _KATTRLTR_ 0 0 0 REV__ENST00000393651.7_1_7:104809697-104844113:-|nuORF REV__ENST00000393651.7_1_7:104809697-104844113:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1979064941406 3 316.197931 945.571963 NaN NaN NaN NaN NaN NaN NaN 28.974 1 26.978 26.478 27.478 -1.9962 0 0 0 0.21486 1 4909 4909 0.45834 0 1 + 22100 21240 14535 14540 21893 21893 0.09699984774260884 KAVEEEITY 9 Unmodified _KAVEEEITY_ 0 0 0 REV__ENSG00000102452|ENST00000251127|NALCN REV__ENSG00000102452|ENST00000251127|NALCN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2722778320312 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 147.16 1 142.05 141.55 142.55 -5.1108 0 0 0 0.18755 1 28473 28473 1.6919 0 1 + 22101 14840 14536 14541 21894 21894 -0.0031399072172462184 KAWAEVYVV 9 Unmodified _KAWAEVYVV_ 0 0 0 ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENST00000471051.1_1_2:37235679-37241082:-|nuORF ENSG00000008869|ENST00000233099|HEATR5B ENSG00000008869|ENST00000233099|HEATR5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2674560546875 2 532.792392 1063.57023 0.052021 2.7717E-05 -0.55625 -0.00029637 -0.50423 -0.00026865 532.7919892043968 132.33 0.56805 127.69 127.45 128.02 -4.6399 25 15 2 0 0 0 0.67174 1 26145 26145 8.1555 0.8663 1 2080800 22102 1049 14537 14542 21895 21895 0.040989309656424666 KAWDRPRAA 9 Unmodified _KAWDRPRAA_ 0 0 0 ENST00000476805.2_1_2:64977750-64977942:-|nuORF ENST00000476805.2_1_2:64977750-64977942:-|nuORF ENST00000476805.2_1_2:64977750-64977942:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.556884765625 3 357.533313 1069.57811 0.11837 4.2322E-05 -0.22829 -8.1622E-05 -0.10992 -3.93E-05 357.53326396099334 20.949 0.31525 19.474 19.35 19.665 -1.4742 13 8 2 0 0 0 0.65153 1 3517 3517 9.544 0.56773 1 530920 22103 10297 14538 14543 21896 21896 0.04610503005801547 KAWENSPNV 9 Unmodified _KAWENSPNV_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2576904296875 2 522.759081 1043.50361 -0.33147 -0.00017328 0.59318 0.00031009 0.2617 0.00013681 522.7591055966185 50.23 0.77446 47.349 46.941 47.715 -2.8811 75 21 5 0 0 0 0.23492 1 9538 9538 31.268 1.0435 1 7487300 22104 2991 14539 14544 21897 21897 -0.016403045962533724 KAWENSPNV 9 Unmodified _KAWENSPNV_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.25732421875 2 522.759081 1043.50361 -0.01777 -9.2894E-06 0.15309 8.0028E-05 0.13532 7.0739E-05 522.7588364733276 50.296 0.71306 47.289 46.941 47.654 -3.0068 69 20 5 0 0 0 0.35202 1 9251 9251 24.991 0 1 5907000 22105 2991 14539 14544 21898 21898 -0.016403045962533724 KAWNDIKKV 9 Unmodified _KAWNDIKKV_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000566622.5_1_15:66794044-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 368.8879089355469 3 367.885353 1100.63423 -0.54027 -0.00019876 0.32356 0.00011903 -0.21671 -7.9725E-05 367.8854282138738 39.301 0.66641 36.896 36.58 37.247 -2.4049 55 18 4 0 0 0 0.45972 1 6987 6987 10.016 3.8105 1 7034600 22106 6349 14540 14545 21899 21899 0.08793711122598324 KAWNDIKKV 9 Unmodified _KAWNDIKKV_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000566622.5_1_15:66794044-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 367.885353 1100.63423 -0.14137 -5.2007E-05 -0.15302 -5.6295E-05 -0.29439 -0.0001083 367.88523403994884 36.965 0.59282 36.965 36.668 37.261 0 0.033248 -0.00022748 NaN 10.016 45 16 4 NaN NaN NaN NaN 0 NaN NaN 0 8002400 22107 6349 14540 14545 0.08793711122598324 KAWNDIKKV 9 Unmodified _KAWNDIKKV_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000566622.5_1_15:66794044-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 367.885353 1100.63423 -0.52741 -0.00019403 0.29017 0.00010675 -0.23725 -8.7279E-05 367.88540769480653 39.475 0.56431 36.926 36.642 37.206 -2.5491 -0.0053791 0.00026165 NaN 10.016 53 15 4 NaN NaN NaN NaN 0 NaN NaN 0 10499000 22108 6349 14540 14545 0.08793711122598324 KAWNDIKKV 9 Unmodified _KAWNDIKKV_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000566622.5_1_15:66794044-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 367.885353 1100.63423 0.026164 9.6254E-06 -0.25366 -9.3319E-05 -0.2275 -8.3693E-05 367.88521498486153 39.381 0.59179 36.94 36.649 37.241 -2.4419 0.0077717 -0.00033855 NaN 10.016 50 16 4 NaN NaN NaN NaN 0 NaN NaN 0 10094000 22109 6349 14540 14545 0.08793711122598324 KAYLWWLV 8 Unmodified _KAYLWWLV_ 0 0 0 REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1 REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2069396972656 3 360.207656 1077.60114 NaN NaN NaN NaN NaN NaN NaN 117.88 1 113.47 112.97 113.97 -4.4088 0 0 0 0.23626 1 22684 22684 0.30703 0.10017 1 + 22110 14253 14541 14546 21900 21900 0.06544129070539384 KAYSEAHEI 9 Unmodified _KAYSEAHEI_ 0 0 0 ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 349.8628234863281 3 349.841701 1046.50327 -0.28427 -9.945E-05 1.2392 0.00043352 0.95492 0.00033407 349.8421008324949 23.366 0.90141 23.366 22.857 23.758 0 58 25 3 0 0 0 0.25976 1 4022 4022 17.113 7.039 1 1100900 22111 6032 14542 14547 21901 21901 -0.018117243160986618 KAYSEAHEI 9 Unmodified _KAYSEAHEI_ 0 0 0 ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 349.841701 1046.50327 -0.84558 -0.00029582 1.7024 0.00059556 0.85678 0.00029974 349.8423196604721 25.135 0.92871 23.282 22.881 23.809 -1.8534 -0.042369 0.00022247 NaN 17.113 44 26 2 NaN NaN NaN NaN 0 NaN NaN 0 868470 22112 6032 14542 14547 -0.018117243160986618 KCDRSICKLN 10 Unmodified _KCDRSICKLN_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.260498046875 2 590.302275 1178.59 NaN NaN NaN NaN NaN NaN NaN 136.83 1 132.19 131.69 132.69 -4.6399 0 0 0 2.8426 1 26996 26996 0.013265 0.011884 1 + 22113 18018 14543 14548 21902 21902 0.007846156424875517 KCEEWLAT 8 Unmodified _KCEEWLAT_ 0 0 0 REV__CON__P17697 REV__CON__P17697 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2657470703125 2 490.23131 978.448068 NaN NaN NaN NaN NaN NaN NaN 92.78 1 88.636 88.136 89.136 -4.1435 0 0 0 0.20462 1 17679 17679 21.747 3.6117 1 + + 22114 13527 14544 14549 21903 21903 -0.04201854108225689 KCEVLEQA 8 Unmodified _KCEVLEQA_ 0 0 0 REV__ENSG00000073711|ENST00000264977|PPP2R3A REV__ENSG00000073711|ENST00000264977|PPP2R3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23236083984375 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 31.039 1 28.922 28.422 29.422 -2.1167 0 0 0 0.2325 1 5623 5623 0.68139 0.27313 1 + 22115 14303 14545 14550 21904 21904 -0.014418541082250158 KCGUGKMGSF 10 Unmodified _KCGUGKMGSF_ 0 0 0 REV__ENSG00000179918|ENST00000478753|SEPHS2 REV__ENSG00000179918|ENST00000478753|SEPHS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27783203125 2 533.191591 1064.36863 NaN NaN NaN NaN NaN NaN NaN 179.54 1 174.63 174.13 175.13 -4.9114 0 0 0 2.8426 1 35826 35826 0 0 0 + 22116 18671 14546 14551 21905 21905 -0.16098067888947298 KCLEEQGL 8 Unmodified _KCLEEQGL_ 0 0 0 nc|ENSG00000171793|P17812-2|CTPS1;CTPS1|p.D577*|1|0.1|ENSG00000171793|chr1:41010192-41010193|-/C|frameshift_variant;ENSG00000171793|ENST00000650070|CTPS1;ENST00000498694.1_1_1:41474453-41475914:+|nuORF nc|ENSG00000171793|P17812-2|CTPS1 nc|ENSG00000171793|P17812-2|CTPS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.230224609375 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 24.8 1 22.946 22.446 23.446 -1.8534 0 0 0 0.21171 1 4049 4049 15.847 1.0089 1 22117 750 14547 14552 21906 21906 -0.014418541082250158 KCLLAGGG 8 Unmodified _KCLLAGGG_ 0 0 0 ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.L252*|1|0.08|ENSG00000144357|chr2:169875856-169875856|T/-|frameshift_variant;UBR3|p.L531Ffs*34|1|0.13|ENSG00000144357|chr2:169905235-169905236|-/T|frameshift_variant;UBR3|p.L920Cfs*18|1|0.15|ENSG00000144357|chr2:169942585-169942585|T/-|frameshift_variant ENSG00000144357|ENST00000272793|UBR3 ENSG00000144357|ENST00000272793|UBR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2014465332031 2 359.699449 717.384345 -0.086672 -3.1176E-05 0.78581 0.00028265 0.69913 0.00025148 359.6995881919505 40.288 0.28743 40.288 40.136 40.424 0 11 7 2 0 0 0 0.84608 1 7490 7490 2.3027 0 1 366320 22118 4548 14548 14553 21907 21907 0.01434830245352714 KCPEPCPPPN 10 Unmodified _KCPEPCPPPN_ 0 0 0 SPRR2E|p.K40Nfs*22|1|0.03|ENSG00000203785|chr1:153093632-153093633|-/CCAAGAGCAAG|frameshift_variant SPRR2E|p.K40Nfs*22|1|0.03|ENSG00000203785|chr1:153093632-153093633|-/CCAAGAGCAAG|frameshift_variant SPRR2E|p.K40Nfs*22|1|0.03|ENSG00000203785|chr1:153093632-153093633|-/CCAAGAGCAAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2664794921875 2 541.243895 1080.47324 0.15272 8.2657E-05 0.27879 0.00015089 0.4315 0.00023355 541.2439548865219 75.351 1.6441 71.936 71.292 72.936 -3.4151 109 46 3 0 0 0 0.42762 1 14832 14832 10.151 0 1 13716000 22119 25786 14549 14554 21908 21908 -0.06378122577302747 KCQRKFLR 8 Unmodified _KCQRKFLR_ 0 0 0 ENST00000342992.10_3_2:179536946-179538410:-|nuORF ENST00000342992.10_3_2:179536946-179538410:-|nuORF ENST00000342992.10_3_2:179536946-179538410:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2135925292969 3 360.214927 1077.62295 NaN NaN NaN NaN NaN NaN NaN 6.6912 1 5.6465 5.1465 6.1465 -1.0446 0 0 0 0.21486 1 487 487 0.40072 0 1 22120 8871 14550 14555 21909 21909 0.0872461054748328 KCTIVNLFSG 10 Unmodified _KCTIVNLFSG_ 0 0 0 REV__ENST00000540626.5_1_11:71713932-71714067:-|nuORF REV__ENST00000540626.5_1_11:71713932-71714067:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.2578125 3 361.195198 1080.56377 NaN NaN NaN NaN NaN NaN NaN 71.404 1 67.937 67.437 68.437 -3.467 0 0 0 0.22588 1 13534 13534 1.5923 0.39894 1 + 22121 22858 14551 14556 21910 21910 0.026706697426334358 KCTKFLWR 8 Unmodified _KCTKFLWR_ 0 0 0 REV__FAM228B|p.R105Kfs*15|1|0.14|ENSG00000219626|chr2:24138046-24138047|-/A|frameshift_variant REV__FAM228B|p.R105Kfs*15|1|0.14|ENSG00000219626|chr2:24138046-24138047|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.22113037109375 3 361.204028 1080.59026 NaN NaN NaN NaN NaN NaN NaN 105.41 1 101.14 100.64 101.64 -4.2638 0 0 0 0.21486 1 20744 20744 1.4819 0.41044 1 + 22122 23515 14552 14557 21911 21911 0.05318403424598728 KCTMCLKITK 10 Unmodified _KCTMCLKITK_ 0 0 0 ENST00000406477.7_1_22:44395197-44395427:+|nuORF ENST00000406477.7_1_22:44395197-44395427:+|nuORF ENST00000406477.7_1_22:44395197-44395427:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.3491516113281 3 390.213207 1167.61779 NaN NaN NaN NaN NaN NaN NaN 11.334 1 10.268 9.7681 10.768 -1.0664 0 0 0 0.22588 1 1279 1279 0 0 1 22123 9543 14553 14558 21912 21912 0.040688025783083503 KDADVRYTL 9 Unmodified _KDADVRYTL_ 0 0 0 REV__nc|ENSG00000124920|Q9Y2G1-2|MYRF REV__nc|ENSG00000124920|Q9Y2G1-2|MYRF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2705688476562 2 540.787838 1079.56112 0.1429 7.7278E-05 0.40715 0.00022018 0.55005 0.00029746 540.7880639576412 135.27 0.70247 130.37 129.94 130.64 -4.8951 26 19 2 0 0 0 0.36931 1 25980 25980 27.629 0.74515 1 3225300 + 22124 24023 14554 14559 21913 21913 0.024525376093151863 KDAHQLLLDV 10 Unmodified _KDAHQLLLDV_ 0 0 0 REV__ENST00000492187.1_1_10:126301466-126301926:+|nuORF REV__ENST00000492187.1_1_10:126301466-126301926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3132934570312 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 172.77 1 167.98 167.48 168.48 -4.7898 0 0 0 0.22588 1 35212 35212 12.241 0.74595 1 + 22125 15098 14555 14560 21914 21914 0.06533086051786086 KDAISISRLQN 11 Unmodified _KDAISISRLQN_ 0 0 0 SDK1|p.V1762Wfs*2|1|0.28|ENSG00000146555|chr7:4208168-4208168|G/-|frameshift_variant;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;SDK1|p.Q1487Pfs*37|1|0.27|ENSG00000146555|chr7:4149293-4149294|-/C|frameshift_variant SDK1|p.V1762Wfs*2|1|0.28|ENSG00000146555|chr7:4208168-4208168|G/-|frameshift_variant SDK1|p.V1762Wfs*2|1|0.28|ENSG00000146555|chr7:4208168-4208168|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7760009765625 2 622.851501 1243.68845 NaN NaN NaN NaN NaN NaN NaN 143.68 1 143.68 143.18 144.18 0 0 0 0 0.22842 1 28679 28679 9.544 0.79857 1 22126 4660 14556 14561 21915 21915 0.07635258483514917 KDALEEWSH 9 Unmodified _KDALEEWSH_ 0 0 0 REV__ENST00000462664.4_1_6:27218995-27219885:+|nuORF REV__ENST00000462664.4_1_6:27218995-27219885:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 372.1061096191406 3 372.176972 1113.50909 -0.2733 -0.00010172 0.049311 1.8352E-05 -0.22399 -8.3363E-05 372.1769656488888 33.69 0.621 31.372 31.043 31.664 -2.3175 66 17 5 0 0 0 0.87708 1 6134 6134 4.1895 0.31317 1 33898000 + 22127 21907 14557 14562 21916 21916 -0.043126258044367205 KDALEEWSH 9 Unmodified _KDALEEWSH_ 0 0 0 REV__ENST00000462664.4_1_6:27218995-27219885:+|nuORF REV__ENST00000462664.4_1_6:27218995-27219885:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 372.176972 1113.50909 -0.15674 -5.8335E-05 -0.064006 -2.3822E-05 -0.22075 -8.2157E-05 372.1769194908356 31.261 0.70263 31.261 30.932 31.635 0 -0.079945 8.9728E-05 NaN 4.1895 67 19 5 NaN NaN NaN NaN 0 NaN NaN 0 29757000 + 22128 21907 14557 14562 -0.043126258044367205 KDALEEWSH 9 Unmodified _KDALEEWSH_ 0 0 0 REV__ENST00000462664.4_1_6:27218995-27219885:+|nuORF REV__ENST00000462664.4_1_6:27218995-27219885:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 372.176972 1113.50909 0.22467 8.3617E-05 -0.56264 -0.0002094 -0.33797 -0.00012579 372.17673085561296 33.52 0.76998 31.373 31.006 31.776 -2.1468 0.032533 -0.00046701 NaN 4.1895 67 21 4 NaN NaN NaN NaN 0 NaN NaN 0 33031000 + 22129 21907 14557 14562 -0.043126258044367205 KDALEEWSH 9 Unmodified _KDALEEWSH_ 0 0 0 REV__ENST00000462664.4_1_6:27218995-27219885:+|nuORF REV__ENST00000462664.4_1_6:27218995-27219885:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 372.176972 1113.50909 -0.28533 -0.00010619 -0.11075 -4.1219E-05 -0.39608 -0.00014741 372.1769111244373 33.572 0.94043 31.356 31.01 31.951 -2.2158 0.015535 3.7534E-05 NaN 4.1895 82 26 5 NaN NaN NaN NaN 0 NaN NaN 0 33337000 + 22130 21907 14557 14562 -0.043126258044367205 KDALKLLNY 9 Unmodified _KDALKLLNY_ 0 0 0 LIG4|p.K169Rfs*7|1|0.11|ENSG00000174405|chr13:108210763-108210763|T/-|frameshift_variant;LIG4|p.L462Ffs*12|1|0.14|ENSG00000174405|chr13:108209883-108209884|-/A|frameshift_variant;ENSG00000174405|ENST00000442234|LIG4 LIG4|p.K169Rfs*7|1|0.11|ENSG00000174405|chr13:108210763-108210763|T/-|frameshift_variant LIG4|p.K169Rfs*7|1|0.11|ENSG00000174405|chr13:108210763-108210763|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21588134765625 3 359.881608 1076.623 -0.21977 -7.9092E-05 0.31226 0.00011238 0.092489 3.3285E-05 359.8816351786918 95.507 0.62449 91.457 91.168 91.793 -4.0496 39 17 3 0 0 0 0.54933 1 18759 18759 16.566 3.6933 1 4353800 22131 6347 14558 14563 21917 21917 0.08774889028450161 KDALKLLNY 9 Unmodified _KDALKLLNY_ 0 0 0 LIG4|p.K169Rfs*7|1|0.11|ENSG00000174405|chr13:108210763-108210763|T/-|frameshift_variant;LIG4|p.L462Ffs*12|1|0.14|ENSG00000174405|chr13:108209883-108209884|-/A|frameshift_variant;ENSG00000174405|ENST00000442234|LIG4 LIG4|p.K169Rfs*7|1|0.11|ENSG00000174405|chr13:108210763-108210763|T/-|frameshift_variant LIG4|p.K169Rfs*7|1|0.11|ENSG00000174405|chr13:108210763-108210763|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20172119140625 3 359.881608 1076.623 -0.69014 -0.00024837 0.87095 0.00031344 0.1808 6.5067E-05 359.8818308289869 95.385 0.79813 91.504 91.09 91.888 -3.881 48 22 3 0 0 0 0.41444 1 18300 18300 24.882 3.2914 1 3604200 22132 6347 14558 14563 21918 21918 0.08774889028450161 KDAPASEDNF 10 Unmodified _KDAPASEDNF_ 0 0 0 REV__nc|ENSG00000101746|O94818-2|NOL4 REV__nc|ENSG00000101746|O94818-2|NOL4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77099609375 2 547.24346 1092.47237 0.13641 7.465E-05 -3.3506 -0.0018336 -3.2142 -0.001759 547.7421882879651 146.41 0.20277 141.3 141.17 141.38 -5.1108 6 5 2 0 0 0 0.74994 1 28325 28325 5.7319 0.50118 1 2394300 + 22133 23977 14559 14564 21919 21919 -0.07016922421007621 KDAPISYL 8 Unmodified _KDAPISYL_ 0 0 0 REV__tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1 REV__tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75079345703125 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 146.6 1 141.6 141.1 142.1 -5 0 0 0 0.21486 1 28374 28374 12.532 0.89125 1 + 22134 24982 14560 14565 21920 21920 0.029309801488807352 KDAVQQDGFN 10 Unmodified _KDAVQQDGFN_ 0 0 0 nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB nc|ENSG00000107758|P16298-3|PPP3CB nc|ENSG00000107758|P16298-3|PPP3CB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2072448730469 3 374.512244 1120.5149 -0.19638 -7.3549E-05 1.0012 0.00037495 0.8048 0.00030141 374.5125607640208 19.819 0.51133 19.819 19.623 20.134 0 35 14 3 0 0 0 0.74833 1 3259 3259 6.2344 0.83165 1 3050700 22135 2437 14561 14566 21921 21921 -0.0405352729274 KDAYLVHLIQR 11 Unmodified _KDAYLVHLIQR_ 0 0 0 ENSG00000105671|ENST00000247003|DDX49;ENST00000601803.5_1_19:19032987-19035509:+|nuORF;nc|ENSG00000105671|Q9Y6V7-2|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF;DDX49|p.M267Ifs*15|1|0.15|ENSG00000105671|chr19:18924257-18924257|G/-|frameshift_variant ENSG00000105671|ENST00000247003|DDX49 ENSG00000105671|ENST00000247003|DDX49 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 678.3909301757812 2 678.393336 1354.77212 NaN NaN NaN NaN NaN NaN NaN 168.17 1 163.28 162.78 163.78 -4.8916 0 0 0 0.22595 1 33138 33138 11.495 0 1 22136 2332 14562 14567 21922 21922 0.10892414651220861 KDAYMSSEDQA 11 Unmodified _KDAYMSSEDQA_ 0 0 0 ENSG00000240654|ENST00000332018|C1QTNF9 ENSG00000240654|ENST00000332018|C1QTNF9 ENSG00000240654|ENST00000332018|C1QTNF9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.758544921875 2 622.758617 1243.50268 NaN NaN NaN NaN NaN NaN NaN 168 1 163.05 162.55 163.55 -4.948 0 0 0 0.23018 1 33096 33096 8.1555 0.54658 1 22137 7843 14563 14568 21923 21923 -0.10932931818115321 KDCDRYDDLC 10 Unmodified _KDCDRYDDLC_ 0 0 0 ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7559204101562 2 623.247363 1244.48017 0.40741 0.00025391 -3.7479 -0.0023358 -3.3404 -0.0020819 623.245596975458 160.4 0.18098 160.4 160.27 160.45 0 5 4 2 0 0 0 0.91149 1 32205 32205 3.2813 1.4371 1 1461200 22138 124 14564 14569 21924 21924 -0.1322885448737452 KDCEECRY 8 Unmodified _KDCEECRY_ 0 0 0 REV__ENSG00000182986|ENST00000682928|ZNF320 REV__ENSG00000182986|ENST00000682928|ZNF320 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6964111328125 2 523.207509 1044.40047 0.40657 0.00021272 -1.21 -0.0006331 -0.80347 -0.00042038 523.7091506862381 120.78 0.17842 116.32 116.2 116.38 -4.467 6 4 2 0 0 0 0.76728 1 23255 23255 5.7604 1.4312 1 887950 + 22139 18814 14565 14570 21925 21925 -0.11995876370724545 KDCEECRY 8 Unmodified _KDCEECRY_ 0 0 0 REV__ENSG00000182986|ENST00000682928|ZNF320 REV__ENSG00000182986|ENST00000682928|ZNF320 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.207509 1044.40047 0.40657 0.00021272 -1.21 -0.0006331 -0.80347 -0.00042038 523.7091506862381 120.78 0.17842 116.32 116.2 116.38 -4.467 0.14905 0.0014958 NaN 5.7604 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 887950 + 22140 18814 14565 14570 -0.11995876370724545 KDCEIDAEEK 10 Unmodified _KDCEIDAEEK_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant;CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2615356445312 2 590.263536 1178.51252 NaN NaN NaN NaN NaN NaN NaN 168.24 1 163.29 162.79 163.79 -4.948 0 0 0 0.22588 1 33156 33156 8.7454 0.83525 1 22141 3001 14566 14571 21926 21926 -0.06959743812763008 KDCWRLMCCC 10 Unmodified _KDCWRLMCCC_ 0 0 0 REV__ENST00000513761.5_1_4:170625285-170628061:+|nuORF REV__ENST00000513761.5_1_4:170625285-170628061:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.773193359375 2 630.744367 1259.47418 NaN NaN NaN NaN NaN NaN NaN 152.02 1 146.79 146.29 147.29 -5.2365 0 0 0 0.22588 1 29471 29471 3.5965 0 1 + 22142 22571 14567 14572 21927 21927 -0.1451769079587848 KDCWRLMCCC 10 Unmodified _KDCWRLMCCC_ 0 0 0 REV__ENST00000513761.5_1_4:170625285-170628061:+|nuORF REV__ENST00000513761.5_1_4:170625285-170628061:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7770385742188 2 630.744367 1259.47418 NaN NaN NaN NaN NaN NaN NaN 152.43 1 147.19 146.69 147.69 -5.2365 0 0 0 0.22588 1 29552 29552 3.5965 0 1 + 22143 22571 14567 14572 21928 21928 -0.1451769079587848 KDDALLADEP 10 Unmodified _KDDALLADEP_ 0 0 0 REV__ENSG00000130584|ENST00000245663|ZBTB46 REV__ENSG00000130584|ENST00000245663|ZBTB46 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7372436523438 2 543.769311 1085.52407 NaN NaN NaN NaN NaN NaN NaN 137.6 1 137.6 137.1 138.1 0 0 0 0 0.22588 1 27295 27295 10.151 3.4274 1 + 22144 16017 14568 14573 21929 21929 -0.015271787271103676 KDDDESDEDE 10 Unmodified _KDDDESDEDE_ 0 0 0 REV__ENSG00000089048|ENST00000617257|ESF1 REV__ENSG00000089048|ENST00000617257|ESF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 598.4453735351562 2 598.707302 1195.40005 NaN NaN NaN NaN NaN NaN NaN 165.88 1 165.88 165.38 166.38 0 0 0 0 0.22588 1 33718 33718 3.5965 0 1 + 22145 14517 14569 14574 21930 21930 -0.18983346075879126 KDDDGGEDDD 10 Unmodified _KDDDGGEDDD_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;DHX9|p.L657Ffs*44|1|0.34|ENSG00000135829|chr1:182876197-182876198|-/T|frameshift_variant;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant;ENST00000436565.2_1_13:77560670-77561054:+|nuORF ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77560670-77561054:+|nuORF ENSG00000135829|ENST00000367549|DHX9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2589111328125 2 540.68363 1079.35271 0.49424 0.00026723 -4.4201 -0.0023899 -3.9258 -0.0021226 540.6802498243363 156.83 0.17297 151.56 151.48 151.65 -5.2712 5 4 2 0 0 0 0.91149 1 30412 30412 0.35063 0 1 591800 22146 3956;9840 14570 14575 21931 21931 -0.18379580556211295 KDDEYDEEE 9 Unmodified _KDDEYDEEE_ 0 0 0 REV__nc|ENSG00000164463|Q8IUR6-2|CREBRF REV__nc|ENSG00000164463|Q8IUR6-2|CREBRF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 585.8167724609375 2 586.217305 1170.42006 NaN NaN NaN NaN NaN NaN NaN 166.71 1 161.76 161.26 162.26 -4.9484 0 0 0 0.23508 1 32697 32697 4.3292 0 1 + 22147 17685 14571 14576 21932 21932 -0.15833550345269032 KDDFLHGLQM 10 Unmodified _KDDFLHGLQM_ 0 0 0 ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2940673828125 2 602.294973 1202.57539 0.44128 0.00026578 -0.075346 -4.538E-05 0.36593 0.0002204 602.2974382885409 142.8 0.17174 137.77 137.65 137.82 -5.0261 6 4 2 0 0 0 0.71097 1 27528 27528 10.074 1.9184 1 1086800 22148 7018 14572 14577 21933 21933 -0.017791332340493682 KDDGFHIKQH 10 Unmodified _KDDGFHIKQH_ 0 0 0 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 612.7803344726562 2 612.809636 1223.60472 NaN NaN NaN NaN NaN NaN NaN 166.84 1 161.94 161.44 162.44 -4.8916 0 0 0 0.22588 1 32732 32732 6.7232 0 1 + 22149 19404 14573 14578 21934 21934 0.0018614710643305443 KDDGKVHL 8 Unmodified _KDDGKVHL_ 0 0 0 ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14;TEX14|p.G1117Hfs*15|1|0.12|ENSG00000121101|chr17:58579689-58579692|CACC/-|frameshift_variant ENSG00000121101|ENST00000349033|TEX14 ENSG00000121101|ENST00000349033|TEX14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 456.25225830078125 2 456.250892 910.48723 NaN NaN NaN NaN NaN NaN NaN 169.29 1 164.42 163.92 164.92 -4.873 0 0 0 0.20896 1 33426 33426 18.135 1.1927 1 22150 3170 14574 14579 21935 21935 0.028406142376638854 KDDKHEQDMV 10 Unmodified _KDDKHEQDMV_ 0 0 0 APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant;APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant;APOB|p.G1921Efs*13|1|0.19|ENSG00000084674|chr2:21011106-21011106|C/-|frameshift_variant;APOB|p.Y2149Vfs*2|2|0.29|ENSG00000084674|chr2:21010424-21010425|-/T|frameshift_variant;APOB|p.M1189*|1|0.34|ENSG00000084674|chr2:21015204-21015204|T/-|frameshift_variant;APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;CON__ENSEMBL:ENSBTAP00000032840 APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant;APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;CON__ENSEMBL:ENSBTAP00000032840 APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.75537109375 2 622.782427 1243.5503 NaN NaN NaN NaN NaN NaN NaN 140.74 1 136.09 135.59 136.59 -4.6493 0 0 0 0.22588 1 27787 27787 6.7232 0 1 + 22151 185;184;646 14575 14580 21936 21936 -0.06173232827291031 KDDKHEQDMV 10 Unmodified _KDDKHEQDMV_ 0 0 0 APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant;APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant;APOB|p.G1921Efs*13|1|0.19|ENSG00000084674|chr2:21011106-21011106|C/-|frameshift_variant;APOB|p.Y2149Vfs*2|2|0.29|ENSG00000084674|chr2:21010424-21010425|-/T|frameshift_variant;APOB|p.M1189*|1|0.34|ENSG00000084674|chr2:21015204-21015204|T/-|frameshift_variant;APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;CON__ENSEMBL:ENSBTAP00000032840 APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant;APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;CON__ENSEMBL:ENSBTAP00000032840 APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.780029296875 2 622.782427 1243.5503 NaN NaN NaN NaN NaN NaN NaN 140.8 1 136.15 135.65 136.65 -4.6493 0 0 0 0.22588 1 27802 27802 9.3831 2.66 1 + 22152 185;184;646 14575 14580 21937 21937 -0.06173232827291031 KDDLARLLRDY 11 Unmodified _KDDLARLLRDY_ 0 0 0 ENSG00000186442|ENST00000417996|KRT3;CON__P12035;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546 ENSG00000186442|ENST00000417996|KRT3 ENSG00000186442|ENST00000417996|KRT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2354736328125 3 459.921014 1376.74121 -0.74276 -0.00034161 0.75327 0.00034644 0.01051 4.8339E-06 459.9214188782745 14.182 0.25039 13.068 12.979 13.23 -1.1142 14 6 3 0 0 0 0.74408 1 2114 2114 8.7518 0.46535 1 3480100 + 22153 663 14576 14581 21938 21938 0.06791216546321266 KDDLARLLRDY 11 Unmodified _KDDLARLLRDY_ 0 0 0 ENSG00000186442|ENST00000417996|KRT3;CON__P12035;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546 ENSG00000186442|ENST00000417996|KRT3 ENSG00000186442|ENST00000417996|KRT3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 459.921014 1376.74121 0.09758 4.4879E-05 0.15884 7.3054E-05 0.25642 0.00011793 459.9210247784097 13.376 0.27663 13.376 13.272 13.549 0 0.22143 -0.0006181 NaN 8.7518 15 7 4 NaN NaN NaN NaN 0 NaN NaN 0 1917900 + 22154 663 14576 14581 0.06791216546321266 KDDLARLLRDY 11 Unmodified _KDDLARLLRDY_ 0 0 0 ENSG00000186442|ENST00000417996|KRT3;CON__P12035;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546 ENSG00000186442|ENST00000417996|KRT3 ENSG00000186442|ENST00000417996|KRT3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 459.921014 1376.74121 -0.74276 -0.00034161 0.75327 0.00034644 0.01051 4.8339E-06 459.9214188782745 14.182 0.25039 13.068 12.979 13.23 -1.1142 -0.086092 0.00020208 NaN 8.7518 14 6 3 NaN NaN NaN NaN 0 NaN NaN 0 3480100 + 22155 663 14576 14581 0.06791216546321266 KDDLARLLRDY 11 Unmodified _KDDLARLLRDY_ 0 0 0 ENSG00000186442|ENST00000417996|KRT3;CON__P12035;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546 ENSG00000186442|ENST00000417996|KRT3 ENSG00000186442|ENST00000417996|KRT3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 459.921014 1376.74121 -0.70289 -0.00032328 0.85193 0.00039182 0.14904 6.8545E-05 459.92138122309416 14.192 0.21126 13.019 12.931 13.142 -1.173 -0.13534 0.0003382 NaN 8.7518 12 5 3 NaN NaN NaN NaN 0 NaN NaN 0 2505700 + 22156 663 14576 14581 0.06791216546321266 KDDLDRGECY 10 Unmodified _KDDLDRGECY_ 0 0 0 REV__nc|ENSG00000114670|Q8NG66-4|NEK11 REV__nc|ENSG00000114670|Q8NG66-4|NEK11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3004455566406 3 405.176644 1212.5081 -0.22668 -9.1845E-05 -0.029497 -1.1952E-05 -0.25618 -0.0001038 405.1781723640286 44.352 0.66438 41.562 41.359 42.024 -2.79 73 18 6 0 0 0 0.91149 1 8406 8406 0.12286 0 1 6499400 + 22157 15384 14577 14582 21939 21939 -0.08965208235622413 KDDLFLGV 8 Unmodified _KDDLFLGV_ 0 0 0 ENSG00000115593|ENST00000419482|SMYD1 ENSG00000115593|ENST00000419482|SMYD1 ENSG00000115593|ENST00000419482|SMYD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7497253417969 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 157.64 1 152.35 151.85 152.85 -5.2854 0 0 0 0.21323 1 30592 30592 14.582 1.0738 1 22158 2869 14578 14583 21940 21940 0.029309801489034726 KDDRDSPVFW 10 Unmodified _KDDRDSPVFW_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 632.782470703125 2 632.801477 1263.5884 NaN NaN NaN NaN NaN NaN NaN 167.57 1 162.68 162.18 163.18 -4.8916 0 0 0 0.22583 1 32974 32974 13.906 1.6654 1 22159 5334 14579 14584 21941 21941 -0.03284978850297193 KDDRFLVGF 9 Unmodified _KDDRFLVGF_ 0 0 0 REV__ENSG00000146386|ENST00000367660|ABRACL REV__ENSG00000146386|ENST00000367660|ABRACL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 366.86785888671875 3 366.197708 1095.57129 -0.0069195 -2.5339E-06 -2.0832 -0.00076285 -2.0901 -0.00076538 366.1964940852916 40.381 0.74425 37.841 37.359 38.103 -2.5398 46 20 3 0 0 0 0.32251 1 7160 7160 0.37959 0 1 8438500 + 22160 16885 14580 14585 21942 21942 0.027331453345595946 KDDSVTFT 8 Unmodified _KDDSVTFT_ 0 0 0 REV__CUBN|p.I3068F|1|0.22|ENSG00000107611|chr10:16874408-16874408|T/A|missense_variant REV__CUBN|p.I3068F|1|0.22|ENSG00000107611|chr10:16874408-16874408|T/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2374267578125 2 456.71909 911.423627 -0.10878 -4.9682E-05 0.40827 0.00018646 0.29949 0.00013678 456.7191711577375 82.768 2.2728 79.16 78.05 80.323 -3.6079 159 64 4 0 0 0 8448 2 16159 16159;16214 2.643 0 1 11181000 + 22161 13613 14581 14586 21943;21944 21943 -0.03562790990076792 KDDTTMIQKWL 11 Unmodified _KDDTTMIQKWL_ 0 0 0 REV__nc|ENSG00000260811|A6NMZ5|OR4C45 REV__nc|ENSG00000260811|A6NMZ5|OR4C45 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23748779296875 3 460.239355 1377.69624 NaN NaN NaN NaN NaN NaN NaN 171.24 1 171.24 170.74 171.74 0 0 0 0 0.22632 1 35263 35263 0.172 0 1 + 22162 24299 14582 14587 21945 21945 0.022496496887697504 KDDVCYFAYH 10 Unmodified _KDDVCYFAYH_ 0 0 0 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1;AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant;AGTPBP1|p.K1079Nfs*10|1|0.38|ENSG00000135049|chr9:85579025-85579025|T/-|frameshift_variant nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7711181640625 2 630.771331 1259.52811 NaN NaN NaN NaN NaN NaN NaN 166.03 1 166.03 165.53 166.53 0 0 0 0 0.22588 1 33767 33767 6.7232 0.99131 1 22163 3896 14583 14588 21946 21946 -0.09127412505040411 KDEDVDMDD 9 Unmodified _KDEDVDMDD_ 0 0 0 REV__DNAJB5|p.E207K|1|0.3|ENSG00000137094|chr9:34996672-34996672|G/A|missense_variant REV__DNAJB5|p.E207K|1|0.3|ENSG00000137094|chr9:34996672-34996672|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2604370117188 2 541.203144 1080.39173 0.27929 0.00015115 4.1968 0.0022713 4.4761 0.0024225 541.2057907578296 145.33 0.27744 140.66 140.41 140.68 -4.6694 10 7 2 0 0 0 0.87511 1 28809 28809 3.9444 0 1 13926000 + 22164 13719 14584 14589 21947 21947 -0.14524571526203545 KDEEEDEEE 9 Unmodified _KDEEEDEEE_ 0 0 0 REV__CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant REV__CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.32275390625 2 576.214763 1150.41497 0.31456 0.00018125 -3.7558 -0.0021642 -3.4413 -0.0019829 576.712079710045 144.95 0.17155 140 139.93 140.1 -4.9445 5 4 2 0 0 0 0.84208 1 28025 28025 1.6526 0 1 802400 + 22165 13343 14585 14590 21948 21948 -0.15421854207897923 KDEGTVVDMV 10 Unmodified _KDEGTVVDMV_ 0 0 0 REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|144|3|sense REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|144|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7855224609375 2 546.765714 1091.51688 0.30664 0.00016766 0.52631 0.00028777 0.83295 0.00045543 546.765969875595 150.45 0.81055 145.72 145.36 146.17 -4.7323 47 22 3 0 0 0 0.67319 1 29831 29831 13.906 0.39817 1 8704800 + 22166 23610 14586 14591 21949 21949 -0.025222345991551265 KDEILEVKL 9 Unmodified _KDEILEVKL_ 0 0 0 REV__ENSG00000205413|ENST00000379958|SAMD9 REV__ENSG00000205413|ENST00000379958|SAMD9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.788818359375 2 543.823889 1085.63323 NaN NaN NaN NaN NaN NaN NaN 163.34 1 158.28 157.78 158.78 -5.0648 0 0 0 0.19512 1 31780 31780 12.241 0 1 + 22167 19592 14587 14592 21950 21950 0.09383451963026346 KDENSFSYG 9 Unmodified _KDENSFSYG_ 0 0 0 REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1 REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.68701171875 2 523.724904 1045.43525 NaN NaN NaN NaN NaN NaN NaN 140.57 1 135.58 135.08 136.08 -4.9877 0 0 0 0.23508 1 27054 27054 7.2892 0.56607 1 + 22168 25189 14588 14593 21951 21951 -0.08564593966752909 KDERQEDPY 9 Unmodified _KDERQEDPY_ 0 0 0 nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;NKRF|p.R664Dfs*7|1|0.22|ENSG00000186416|chrX:119589435-119589435|T/-|frameshift_variant;ENSG00000186416|ENST00000688521|NKRF nc|ENSG00000186416|O15226|NKRF nc|ENSG00000186416|O15226|NKRF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2500610351562 2 590.267467 1178.52038 NaN NaN NaN NaN NaN NaN NaN 144.29 1 139.22 138.72 139.72 -5.0671 0 0 0 0.23508 1 27831 27831 7.9102 0 1 22169 7054 14589 14594 21952 21952 -0.06173848500952772 KDESAAMY 8 Unmodified _KDESAAMY_ 0 0 0 tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1 tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1 tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2297058105469 2 457.699843 913.385133 -0.10865 -4.9728E-05 0.89957 0.00041173 0.79093 0.00036201 457.7001024899101 66.215 0.63098 63.168 62.876 63.507 -3.047 25 17 2 0 0 0 0.40222 1 12816 12816 32.305 9.1571 1 682440 22170 26357 14590 14595 21953 21953 -0.07502419896263746 KDETEFDY 8 Unmodified _KDETEFDY_ 0 0 0 REV__ENSG00000139351|ENST00000392924|SYCP3 REV__ENSG00000139351|ENST00000392924|SYCP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6807250976562 2 523.719287 1045.42402 NaN NaN NaN NaN NaN NaN NaN 118.49 1 114.08 113.58 114.58 -4.4088 0 0 0 0.21486 1 22800 22800 5.7604 0.52976 1 + 22171 16516 14591 14596 21954 21954 -0.09687416060910436 KDETKKAEEK 10 Unmodified _KDETKKAEEK_ 0 0 0 REV__nc|ENSG00000132780|P49321-4|NASP REV__nc|ENSG00000132780|P49321-4|NASP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 603.3228759765625 2 603.322242 1204.62993 NaN NaN NaN NaN NaN NaN NaN 167.49 1 167.49 166.99 167.99 0 0 0 0 0.22588 1 34230 34230 11.495 0.6952 1 + 22172 16134 14592 14597 21955 21955 0.03580157118358329 KDEVKKKEEQ 10 Unmodified _KDEVKKKEEQ_ 0 0 0 REV__ENSG00000138758|ENST00000264893|SEPTIN11 REV__ENSG00000138758|ENST00000264893|SEPTIN11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7517700195312 2 630.843342 1259.67213 NaN NaN NaN NaN NaN NaN NaN 147.1 1 141.99 141.49 142.49 -5.1108 0 0 0 0.22588 1 28461 28461 12.241 2.1667 1 + 22173 16486 14593 14598 21956 21956 0.052681325267712964 KDEYGEFEED 10 Unmodified _KDEYGEFEED_ 0 0 0 REV__CCDC47|p.N116Kfs*2|1|0.32|ENSG00000108588|chr17:63764764-63764765|-/T|frameshift_variant REV__CCDC47|p.N116Kfs*2|1|0.32|ENSG00000108588|chr17:63764764-63764765|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7518310546875 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 154.39 1 154.39 153.89 154.89 0 0 0 0 0.22588 1 30945 30945 3.5965 0 1 + 22174 13298 14594 14599 21957 21957 -0.1363698455722897 KDEYGEFEED 10 Unmodified _KDEYGEFEED_ 0 0 0 REV__CCDC47|p.N116Kfs*2|1|0.32|ENSG00000108588|chr17:63764764-63764765|-/T|frameshift_variant REV__CCDC47|p.N116Kfs*2|1|0.32|ENSG00000108588|chr17:63764764-63764765|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7509155273438 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 140.81 1 136.16 135.66 136.66 -4.6493 0 0 0 0.22588 1 27803 27803 3.5965 0 1 + 22175 13298 14594 14599 21958 21958 -0.1363698455722897 KDFEPYDFT 9 Unmodified _KDFEPYDFT_ 0 0 0 nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1 nc|ENSG00000095485|Q69YN2-2|CWF19L1 nc|ENSG00000095485|Q69YN2-2|CWF19L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7088928222656 3 387.841478 1160.50261 -0.084215 -3.2662E-05 0.3029 0.00011748 0.21868 8.4815E-05 387.8414494602227 22.667 0.39144 22.667 22.432 22.823 0 16 10 2 0 0 0 0.8606 1 3845 3845 10.8 2.3552 1 832860 22176 1861 14595 14600 21959 21959 -0.0712256375582001 KDFEPYDFT 9 Unmodified _KDFEPYDFT_ 0 0 0 nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1 nc|ENSG00000095485|Q69YN2-2|CWF19L1 nc|ENSG00000095485|Q69YN2-2|CWF19L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 387.841478 1160.50261 -0.91587 -0.00035521 0.84782 0.00032882 -0.068043 -2.639E-05 387.84168624009106 24.377 0.34649 22.523 22.363 22.71 -1.8534 -0.070503 0.00055187 NaN 10.8 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 339470 22177 1861 14595 14600 -0.0712256375582001 KDFIKPFYEG 10 Unmodified _KDFIKPFYEG_ 0 0 0 tr|U7T4V6|U7T4V6_FUSNUUPF0735ACTdomain-containingproteinHMPREF1766_00573OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00573PE=3SV=1 tr|U7T4V6|U7T4V6_FUSNUUPF0735ACTdomain-containingproteinHMPREF1766_00573OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00573PE=3SV=1 tr|U7T4V6|U7T4V6_FUSNUUPF0735ACTdomain-containingproteinHMPREF1766_00573OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00573PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7626342773438 2 622.321514 1242.62847 0.43069 0.00026803 0.25337 0.00015768 0.68406 0.0004257 622.3223918369523 165.36 0.23628 160.38 160.29 160.52 -4.9811 14 6 3 0 0 0 0.86856 1 32343 32343 7.609 1.8771 1 11056000 22178 26439 14596 14601 21960 21960 0.016865678202748313 KDFKQNTPF 9 Unmodified _KDFKQNTPF_ 0 0 0 ENST00000476246.5_1_19:35991290-35996867:-|nuORF ENST00000476246.5_1_19:35991290-35996867:-|nuORF ENST00000476246.5_1_19:35991290-35996867:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2055358886719 3 375.529346 1123.56621 0.22361 8.3972E-05 0.0053349 2.0034E-06 0.22894 8.5976E-05 375.52931750441013 27.567 0.45456 25.812 25.617 26.072 -1.7552 19 12 2 0 0 0 0.8606 1 4650 4650 2.086 0 1 2927800 22179 10285 14597 14602 21961 21961 0.009368414719347129 KDFKQNTPF 9 Unmodified _KDFKQNTPF_ 0 0 0 ENST00000476246.5_1_19:35991290-35996867:-|nuORF ENST00000476246.5_1_19:35991290-35996867:-|nuORF ENST00000476246.5_1_19:35991290-35996867:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.529346 1123.56621 0.65046 0.00024427 -0.46481 -0.00017455 0.18564 6.9715E-05 375.5291610226559 27.772 0.41638 25.99 25.737 26.153 -1.7821 0.13436 -0.00045877 NaN 2.086 32 11 4 NaN NaN NaN NaN 0 NaN NaN 0 2421900 22180 10285 14597 14602 0.009368414719347129 KDFKQNTPF 9 Unmodified _KDFKQNTPF_ 0 0 0 ENST00000476246.5_1_19:35991290-35996867:-|nuORF ENST00000476246.5_1_19:35991290-35996867:-|nuORF ENST00000476246.5_1_19:35991290-35996867:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 375.529346 1123.56621 -0.46204 -0.00017351 0.39493 0.00014831 -0.06711 -2.5202E-05 375.5294400042788 27.76 0.42117 25.764 25.574 25.995 -1.9962 -0.091362 0.00050981 NaN 2.086 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2324000 22181 10285 14597 14602 0.009368414719347129 KDFLDEHY 8 Unmodified _KDFLDEHY_ 0 0 0 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.283447265625 2 533.745639 1065.47673 0.11468 6.1208E-05 -1.0241 -0.0005466 -0.90941 -0.00048539 533.7473572977589 134.31 0.1745 134.31 134.25 134.42 0 6 4 2 0 0 0 1.0147 1 26602 26602 2.3027 0 1 1228400 22182 6131 14598 14603 21962 21962 -0.05339413207434518 KDFNEQNLN 9 Unmodified _KDFNEQNLN_ 0 0 0 REV__ZBTB41|p.E538*|1|0.36|ENSG00000177888|chr1:197181052-197181053|-/TA|frameshift_variant REV__ZBTB41|p.E538*|1|0.36|ENSG00000177888|chr1:197181052-197181053|-/TA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2061462402344 3 374.512244 1120.5149 0.22373 8.3789E-05 0.85059 0.00031856 1.0743 0.00040234 374.51254449594694 21.379 0.45943 19.905 19.701 20.16 -1.4742 29 12 3 0 0 0 0.69394 1 3643 3643 6.6304 4.1319 1 3151800 + 22183 18580 14599 14604 21963 21963 -0.0405352729274 KDFNEQNLN 9 Unmodified _KDFNEQNLN_ 0 0 0 REV__ZBTB41|p.E538*|1|0.36|ENSG00000177888|chr1:197181052-197181053|-/TA|frameshift_variant REV__ZBTB41|p.E538*|1|0.36|ENSG00000177888|chr1:197181052-197181053|-/TA|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.512244 1120.5149 0.22373 8.3789E-05 0.85059 0.00031856 1.0743 0.00040234 374.51254449594694 21.379 0.45943 19.905 19.701 20.16 -1.4742 0.032395 -4.6634E-05 NaN 6.6304 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3151800 + 22184 18580 14599 14604 -0.0405352729274 KDFNEQNLN 9 Unmodified _KDFNEQNLN_ 0 0 0 REV__ZBTB41|p.E538*|1|0.36|ENSG00000177888|chr1:197181052-197181053|-/TA|frameshift_variant REV__ZBTB41|p.E538*|1|0.36|ENSG00000177888|chr1:197181052-197181053|-/TA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 374.512244 1120.5149 -0.18882 -7.0716E-05 0.82467 0.00030885 0.63585 0.00023813 374.5124921424532 21.279 0.49247 19.894 19.684 20.177 -1.3847 0.021491 -7.5757E-05 NaN 6.6304 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2530500 + 22185 18580 14599 14604 -0.0405352729274 KDFQEDWN 8 Unmodified _KDFQEDWN_ 0 0 0 REV__ENSG00000124570|ENST00000380539|SERPINB6 REV__ENSG00000124570|ENST00000380539|SERPINB6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2603759765625 2 541.232896 1080.45124 NaN NaN NaN NaN NaN NaN NaN 161.14 1 155.91 155.41 156.41 -5.2299 0 0 0 0.21486 1 31294 31294 5.2307 0 1 + 22186 15785 14600 14605 21964 21964 -0.08576887729850569 KDFQEWRDRWY 11 Unmodified _KDFQEWRDRWY_ 0 0 0 REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7908325195312 3 543.591668 1627.75317 0.33911 0.00018434 -1.095 -0.00059521 -0.75585 -0.00041087 543.9259816368262 146.69 0.16754 146.69 146.61 146.77 0 5 4 2 0 0 0 0.96197 1 29342 29342 1.2148 0.70888 1 2382500 + 22187 16286 14601 14606 21965 21965 -0.03559166710488171 KDFQEWRDRWY 11 Unmodified _KDFQEWRDRWY_ 0 0 0 REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7841186523438 3 543.591668 1627.75317 0.33724 0.00018332 2.2511 0.0012237 2.5884 0.001407 543.9271346447827 141.23 0.20702 141.23 141.12 141.33 0 9 5 3 0 0 0 0.96218 1 28147 28147 0.40827 0.40827 1 2201200 + 22188 16286 14601 14606 21966 21966 -0.03559166710488171 KDFQEWRDRWY 11 Unmodified _KDFQEWRDRWY_ 0 0 0 REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7843627929688 3 543.591668 1627.75317 NaN NaN NaN NaN NaN NaN NaN 128.46 1 123.83 123.33 124.33 -4.6292 0 0 0 0.22632 1 25325 25325 0.026206 0 1 + 22189 16286 14601 14606 21967 21967 -0.03559166710488171 KDFQEWRDRWY 11 Unmodified _KDFQEWRDRWY_ 0 0 0 REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3507080078125 2 814.883864 1627.75317 NaN NaN NaN NaN NaN NaN NaN 172.38 1 167.59 167.09 168.09 -4.7898 0 0 0 0.23698 1 35115 35115 1.1933 1.1933 1 + 22190 16286 14601 14606 21968 21968 -0.03559166710488171 KDFQEWRDRWY 11 Unmodified _KDFQEWRDRWY_ 0 0 0 REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF REV__ENST00000564704.5_1_16:67289660-67296168:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77978515625 3 543.591668 1627.75317 NaN NaN NaN NaN NaN NaN NaN 173.89 1 169.01 168.51 169.51 -4.8845 0 0 0 0.23698 1 34535 34535 0.40827 0.31342 1 + 22191 16286 14601 14606 21969 21969 -0.03559166710488171 KDFRGDSGGR 10 Unmodified _KDFRGDSGGR_ 0 0 0 ENST00000478501.5_1_7:99699268-99699675:+|nuORF;AP4M1|p.L189Ffs*14|1|0.17|ENSG00000221838|chr7:100104107-100104108|-/T|frameshift_variant;ENSG00000221838|ENST00000359593|AP4M1 ENST00000478501.5_1_7:99699268-99699675:+|nuORF ENST00000478501.5_1_7:99699268-99699675:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7696533203125 2 547.770511 1093.52647 NaN NaN NaN NaN NaN NaN NaN 168.93 1 164 163.5 164.5 -4.9295 0 0 0 0.22588 1 33327 33327 11.495 1.4208 1 22192 177 14602 14607 21970 21970 -0.016552854787505566 KDFSIVQRMW 10 Unmodified _KDFSIVQRMW_ 0 0 0 REV__ENSG00000112837|ENST00000369663|TBX18 REV__ENSG00000112837|ENST00000369663|TBX18 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2275085449219 3 437.228902 1308.66488 NaN NaN NaN NaN NaN NaN NaN 59.61 1 59.61 59.11 60.11 0 0 0 0 2.8426 1 11420 11420 6.6304 1.2277 1 + 22193 15316 14603 14608 21971 21971 0.022891214453238717 KDGAAMLMKT 10 Unmodified _KDGAAMLMKT_ 0 0 0 REV__ENSG00000100362|ENST00000417718|PVALB REV__ENSG00000100362|ENST00000417718|PVALB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2728881835938 2 533.275195 1064.53584 NaN NaN NaN NaN NaN NaN NaN 24.774 1 24.774 24.274 25.274 0 0 0 0 2.8426 1 4275 4275 14.405 3.5064 1 + 22194 14701 14604 14609 21972 21972 0.006150234909000574 KDGDVMLFR 9 Unmodified _KDGDVMLFR_ 0 0 0 REV__nc|ENSG00000133477|Q8NEG4-2|FAM83F REV__nc|ENSG00000133477|Q8NEG4-2|FAM83F MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2649536132812 2 540.778959 1079.54336 0.29078 0.00015725 -1.0722 -0.0005798 -0.78137 -0.00042255 540.7787839925734 147.56 0.098892 142.85 142.8 142.9 -4.7095 4 2 2 0 0 0 0.58804 1 29287 29287 13.906 3.0821 1 2532700 + 22195 16168 14605 14610 21973 21973 0.006774990828262162 KDGDVMLFR 9 Unmodified _KDGDVMLFR_ 0 0 0 REV__nc|ENSG00000133477|Q8NEG4-2|FAM83F REV__nc|ENSG00000133477|Q8NEG4-2|FAM83F MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.778959 1079.54336 0.29078 0.00015725 -1.0722 -0.0005798 -0.78137 -0.00042255 540.7787839925734 147.56 0.098892 142.85 142.8 142.9 -4.7095 0 0 NaN 13.906 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 2532700 + 22196 16168 14605 14610 0.006774990828262162 KDGKDLLALD 10 Unmodified _KDGKDLLALD_ 0 0 0 nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79553706-79569486:-|nuORF;DLG5|p.S1700Y|1|0.35|ENSG00000151208|chr10:77805730-77805730|G/T|missense_variant nc|ENSG00000151208|Q8TDM6-2|DLG5 nc|ENSG00000151208|Q8TDM6-2|DLG5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 544.3025512695312 2 544.303321 1086.59209 NaN NaN NaN NaN NaN NaN NaN 169.5 1 169.5 169 170 0 0 0 0 0.22588 1 34794 34794 12.241 0 1 22197 4852 14606 14611 21974 21974 0.0522569092354388 KDGLDVPYIQI 11 Unmodified _KDGLDVPYIQI_ 0 0 0 REV__nc|ENSG00000163882|P52434-5|POLR2H REV__nc|ENSG00000163882|P52434-5|POLR2H MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7587280273438 2 630.845353 1259.67615 NaN NaN NaN NaN NaN NaN NaN 142.93 1 142.93 142.43 143.43 0 0 0 0 0.13346 1 28509 28509 30.703 3.4802 1 + 22198 17624 14607 14612 21975 21975 0.056702220204670084 KDGLHKMQ 8 Unmodified _KDGLHKMQ_ 0 0 0 ENSG00000114455|ENST00000467761|HHLA2;HHLA2|p.E237D|1|0.45|ENSG00000114455|chr3:108357869-108357869|A/C|missense_variant;nc|ENSG00000114455|Q9UM44-2|HHLA2 ENSG00000114455|ENST00000467761|HHLA2 ENSG00000114455|ENST00000467761|HHLA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72369384765625 2 478.752744 955.490935 -0.22679 -0.00010858 0.031144 1.491E-05 -0.19565 -9.3668E-05 478.7528165390518 35.01 0.45597 32.616 32.354 32.81 -2.3938 19 12 2 0 0 0 0.99127 1 6454 6454 7.609 0 1 1318800 22199 2791 14608 14613 21976 21976 0.011409607398718435 KDGLIKKKR 9 Unmodified _KDGLIKKKR_ 0 0 0 REV__ENST00000415226.1_1_2:237168173-237186074:+|nuORF REV__ENST00000415226.1_1_2:237168173-237186074:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7696533203125 2 543.361308 1084.70806 0.34316 0.00018646 -1.9957 -0.0010844 -1.6525 -0.0008979 543.3589118637624 158.45 0.13669 158.45 158.36 158.5 0 5 3 2 0 0 0 0.87741 1 31806 31806 3.2813 1.4371 1 1034700 + 22200 21453 14609 14614 21977 21977 0.1690967928493592 KDGLIKKKR 9 Unmodified _KDGLIKKKR_ 0 0 0 REV__ENST00000415226.1_1_2:237168173-237186074:+|nuORF REV__ENST00000415226.1_1_2:237168173-237186074:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.361308 1084.70806 0.56085 0.00030475 -2.164 -0.0011758 -1.6031 -0.00087108 543.8608551932256 163.71 0.16882 158.65 158.52 158.69 -5.0648 0.10165 -9.9311E-05 NaN 3.2813 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 6680800 + 22201 21453 14609 14614 0.1690967928493592 KDGPEIGLRLF 11 Unmodified _KDGPEIGLRLF_ 0 0 0 ENST00000548047.5_1_12:56333897-56335920:+|nuORF;ENST00000551739.5_1_12:56333995-56337187:+|nuORF;ENSG00000065357|ENST00000331886|DGKA;ENST00000552478.5_1_12:56334750-56337187:+|nuORF ENST00000548047.5_1_12:56333897-56335920:+|nuORF ENST00000548047.5_1_12:56333897-56335920:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7576293945312 2 622.853512 1243.69247 NaN NaN NaN NaN NaN NaN NaN 140.7 1 135.71 135.21 136.21 -4.9877 0 0 0 0.23087 1 27083 27083 7.609 1.4032 1 22202 1356 14610 14615 21978 21978 0.0803734797721063 KDGRIRMKEL 10 Unmodified _KDGRIRMKEL_ 0 0 0 ENSG00000079689|ENST00000377961|SCGN ENSG00000079689|ENST00000377961|SCGN ENSG00000079689|ENST00000377961|SCGN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7652587890625 2 623.358439 1244.70233 0.4483 0.00027945 0.50913 0.00031737 0.95742 0.00059682 623.861565843521 138.19 0.1394 133.35 133.27 133.41 -4.84 5 3 2 0 0 0 0.89145 1 26620 26620 12.241 4.6317 1 909120 22203 1598 14611 14616 21979 21979 0.0897621271094522 KDGTILKVS 9 Unmodified _KDGTILKVS_ 0 0 0 KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant;KAT6A|p.P1694Tfs*13|1|0.25|ENSG00000083168|chr8:41933141-41933142|-/G|frameshift_variant;ENSG00000083168|ENST00000265713|KAT6A KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2454833984375 2 480.78985 959.565146 0.36269 0.00017438 -0.75668 -0.0003638 -0.39399 -0.00018942 480.7894215547081 33.184 0.44155 30.968 30.774 31.216 -2.2158 26 12 3 0 0 0 0.16619 1 5762 5762 41.84 4.765 1 1786600 22204 1650 14612 14617 21980 21980 0.0837462710304635 KDGYVEEIK 9 Unmodified _KDGYVEEIK_ 0 0 0 REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1 REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2736206054688 2 540.782222 1079.54989 0.22132 0.00011969 -2.7379 -0.0014806 -2.5165 -0.0013609 541.2830403592712 151.56 0.1777 146.33 146.18 146.36 -5.2365 5 4 2 0 0 0 0.65387 1 29376 29376 9.3831 1.473 1 967670 + 22205 25110 14613 14618 21981 21981 0.013297155151803963 KDHLKNHLH 9 Unmodified _KDHLKNHLH_ 0 0 0 PLAG1|p.K184Sfs*45|1|0.25|ENSG00000181690|chr8:56167195-56167195|T/-|frameshift_variant;nc|ENSG00000181690|Q6DJT9-2|PLAG1;ENSG00000181690|ENST00000316981|PLAG1 PLAG1|p.K184Sfs*45|1|0.25|ENSG00000181690|chr8:56167195-56167195|T/-|frameshift_variant PLAG1|p.K184Sfs*45|1|0.25|ENSG00000181690|chr8:56167195-56167195|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21002197265625 3 381.212351 1140.61522 NaN NaN NaN NaN NaN NaN NaN 118.81 1 114.4 113.9 114.9 -4.4088 0 0 0 0.23508 1 22863 22863 4.1895 1.1943 1 22206 6735 14614 14619 21982 21982 0.050541745515374714 KDHRLQKVK 9 Unmodified _KDHRLQKVK_ 0 0 0 NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant;ENSG00000179299|ENST00000381782|NSUN7;nc|ENSG00000179299|Q8NE18-2|NSUN7 NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3346557617188 2 576.354014 1150.69348 NaN NaN NaN NaN NaN NaN NaN 128.04 1 123.3 122.8 123.8 -4.7408 0 0 0 0.23508 1 24634 24634 3.9444 0.3479 1 22207 6622 14615 14620 21983 21983 0.1241560713679064 KDHRMRVSL 9 Unmodified _KDHRMRVSL_ 0 0 0 REV__ENST00000472654.1_1_X:48933860-48934482:-|nuORF REV__ENST00000472654.1_1_X:48933860-48934482:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2074279785156 3 381.213475 1140.6186 -0.020225 -7.7099E-06 -0.62185 -0.00023706 -0.64207 -0.00024477 381.2131760886015 74.566 0.8458 74.566 74.221 75.067 0 58 23 3 0 0 0 0.69259 1 14414 14414 4.1895 1.7547 1 9095600 + 22208 19295 14616 14621 21984 21984 0.05391101333930237 KDIDFVFRPNK 11 Unmodified _KDIDFVFRPNK_ 0 0 0 REV__PLXND1|p.Q1780R|1|0.23|ENSG00000004399|chr3:129558534-129558534|T/C|missense_variant REV__PLXND1|p.Q1780R|1|0.23|ENSG00000004399|chr3:129558534-129558534|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2310791015625 3 460.254105 1377.74048 0.060468 2.7831E-05 -0.093555 -4.3059E-05 -0.033088 -1.5229E-05 460.588307193155 117.2 0.83487 112.71 112.21 113.05 -4.486 48 23 3 0 0 0 0.60781 1 23042 23042 5.4027 5.2307 1 3003400 + 22209 24490 14617 14622 21985 21985 0.06672421897292224 KDIHEVNEDY 10 Unmodified _KDIHEVNEDY_ 0 0 0 tr|U7SMX2|U7SMX2_FUSNUdTMPkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01731PE=3SV=1 tr|U7SMX2|U7SMX2_FUSNUdTMPkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01731PE=3SV=1 tr|U7SMX2|U7SMX2_FUSNUdTMPkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01731PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76318359375 2 631.288399 1260.56225 0.45133 0.00028492 1.0972 0.00069262 1.5485 0.00097754 631.2890415855841 108.68 0.48811 104.36 104.14 104.63 -4.32 28 13 3 0 0 0 0.64074 1 21470 21470 21.537 0 1 2871700 22210 26014 14618 14623 21986 21986 -0.05761292812417196 KDIHKCVD 8 Unmodified _KDIHKCVD_ 0 0 0 ENSG00000116668|ENST00000367500|SWT1 ENSG00000116668|ENST00000367500|SWT1 ENSG00000116668|ENST00000367500|SWT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.733154296875 2 479.244752 956.474951 -0.083459 -3.9997E-05 -0.38513 -0.00018457 -0.46858 -0.00022457 479.2446927728678 19.912 0.2052 19.912 19.758 19.963 0 9 5 2 0 0 0 0.70215 1 3279 3279 36.127 3.8215 1 264980 22211 2939 14619 14624 21987 21987 -0.005027454970445433 KDIKAEEF 8 Unmodified _KDIKAEEF_ 0 0 0 tr|U7SJE6|U7SJE6_FUSNUPhosphomethylpyrimidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiCPE=3SV=1 tr|U7SJE6|U7SJE6_FUSNUPhosphomethylpyrimidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiCPE=3SV=1 tr|U7SJE6|U7SJE6_FUSNUPhosphomethylpyrimidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2565002441406 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 65.519 1 65.519 65.019 66.019 0 0 0 0 0.21486 1 12636 12636 12.532 0.89125 1 22212 25939 14620 14625 21988 21988 0.012100613149868877 KDIKKVSPR 9 Unmodified _KDIKKVSPR_ 0 0 0 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5619201660156 3 357.560869 1069.66078 -0.0019464 -6.9595E-07 1.7958 0.00064212 1.7939 0.00064143 357.56141217705937 24.116 0.20738 22.582 22.507 22.714 -1.5342 8 5 2 0 0 0 0.52991 1 3920 3920 0.87518 0.8718 1 405900 + 22213 24894 14621 14626 21989 21989 0.12873400013927494 KDIKKVSPR 9 Unmodified _KDIKKVSPR_ 0 0 0 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5625 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 27.044 1 25.409 24.909 25.909 -1.6347 0 0 0 0.10686 1 4508 4508 37.075 5.0372 1 + 22214 24894 14621 14626 21990 21990 0.12873400013927494 KDIKKVSPR 9 Unmodified _KDIKKVSPR_ 0 0 0 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.55706787109375 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 27.202 1 25.568 25.068 26.068 -1.6347 0 0 0 0.10686 1 4540 4540 37.075 2.8529 1 + 22215 24894 14621 14626 21991 21991 0.12873400013927494 KDIKKVSPR 9 Unmodified _KDIKKVSPR_ 0 0 0 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5650634765625 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 27.31 1 25.555 25.055 26.055 -1.7552 0 0 0 0.087233 1 4563 4563 40.725 7.28 1 + 22216 24894 14621 14626 21992 21992 0.12873400013927494 KDIKKVSPR 9 Unmodified _KDIKKVSPR_ 0 0 0 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5614013671875 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 27.427 1 25.672 25.172 26.172 -1.7552 0 0 0 0.059716 1 4590 4590 47.732 14.287 1 + 22217 24894 14621 14626 21993 21993 0.12873400013927494 KDIKKVSPR 9 Unmodified _KDIKKVSPR_ 0 0 0 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5621643066406 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 27.138 1 25.216 24.716 25.716 -1.9222 0 0 0 0.14377 1 4522 4522 14.987 0 1 + 22218 24894 14621 14626 21994 21994 0.12873400013927494 KDIKKVSPR 9 Unmodified _KDIKKVSPR_ 0 0 0 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5621643066406 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 27.152 1 25.23 24.73 25.73 -1.9222 0 0 0 0.10686 1 4525 4525 37.075 5.0372 1 + 22219 24894 14621 14626 21995 21995 0.12873400013927494 KDILDLAYP 9 Unmodified _KDILDLAYP_ 0 0 0 REV__CDK9|p.R284H|1|0.4|ENSG00000136807|chr9:127789275-127789275|G/A|missense_variant REV__CDK9|p.R284H|1|0.4|ENSG00000136807|chr9:127789275-127789275|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.697265625 2 524.289682 1046.56481 0.43364 0.00022735 -0.80089 -0.0004199 -0.36725 -0.00019255 524.7900324626524 153.46 0.13727 148.24 148.14 148.28 -5.2209 5 3 2 0 0 0 0.80264 1 29750 29750 8.1555 1.4324 1 657050 + 22220 13357 14622 14627 21996 21996 0.043392073831682865 KDILEERLY 9 Unmodified _KDILEERLY_ 0 0 0 FRMPD2|p.N579Tfs*84|1|0.32|ENSG00000170324|chr10:48206809-48206809|T/-|frameshift_variant;FRMPD2|p.K602Sfs*61|1|0.27|ENSG00000170324|chr10:48201377-48201377|T/-|frameshift_variant;nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2 FRMPD2|p.N579Tfs*84|1|0.32|ENSG00000170324|chr10:48206809-48206809|T/-|frameshift_variant FRMPD2|p.N579Tfs*84|1|0.32|ENSG00000170324|chr10:48206809-48206809|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2760009765625 2 589.824421 1177.63429 0.39905 0.00023537 2.1608 0.0012745 2.5598 0.0015099 590.3256404967701 154.37 0.23788 149.15 149.01 149.25 -5.2209 7 6 2 0 0 0 0.80521 1 29930 29930 6.7232 3.1267 1 1146000 22221 6060 14623 14628 21997 21997 0.052576663319541694 KDILSAPRF 9 Unmodified _KDILSAPRF_ 0 0 0 REV__ENST00000369494.5_1_1:116925078-116925195:+|nuORF REV__ENST00000369494.5_1_1:116925078-116925195:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6834106445312 2 523.803291 1045.59203 0.3653 0.00019134 1.5387 0.00080596 1.904 0.0009973 524.3048378831824 145.95 0.59317 140.95 140.46 141.05 -5 20 16 2 0 0 0 0.60663 1 28166 28166 32.786 16.637 1 2066300 + 22222 20961 14624 14629 21998 21998 0.07105735714230832 KDILSAPRF 9 Unmodified _KDILSAPRF_ 0 0 0 REV__ENST00000369494.5_1_1:116925078-116925195:+|nuORF REV__ENST00000369494.5_1_1:116925078-116925195:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7012329101562 2 523.803291 1045.59203 0.35308 0.00018494 2.6599 0.0013933 3.013 0.0015782 523.8050761594626 144.47 0.76283 139.53 139.2 139.97 -4.9445 33 21 2 0 0 0 0.74858 1 27995 27995 22.736 2.3217 1 2912900 + 22223 20961 14624 14629 21999 21999 0.07105735714230832 KDIPRCFVA 9 Unmodified _KDIPRCFVA_ 0 0 0 sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1;sp|P08546|DPOL_HCMVADNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL54PE=1SV=2 sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1 sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.1920166015625 3 350.191788 1047.55354 NaN NaN NaN NaN NaN NaN NaN 43.191 1 40.585 40.085 41.085 -2.606 0 0 0 0.23508 1 7789 7789 7.1017 1.3699 1 22224 25747 14625 14630 22000 22000 0.03166106808043878 KDIQRIPSL 9 Unmodified _KDIQRIPSL_ 0 0 0 nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR;nc|ENSG00000165409|P16473-2|TSHR;nc|ENSG00000165409|P16473-3|TSHR nc|ENSG00000165409|P16473|TSHR nc|ENSG00000165409|P16473|TSHR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5489501953125 3 357.216991 1068.62914 -0.11772 -4.2053E-05 -2.8878 -0.0010316 -3.0055 -0.0010736 357.5489370189557 108.54 0.24315 104.08 103.98 104.22 -4.4518 10 6 2 0 0 0 0.65153 1 20840 20840 9.544 1.935 1 653690 22225 5625 14626 14631 22001 22001 0.09757407259985484 KDITEFSLIH 10 Unmodified _KDITEFSLIH_ 0 0 0 REV__ENSG00000141564|ENST00000306801|RPTOR REV__ENSG00000141564|ENST00000306801|RPTOR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.0142211914062 2 601.824421 1201.63429 NaN NaN NaN NaN NaN NaN NaN 165.91 1 165.91 165.41 166.41 0 0 0 0 0.22588 1 33730 33730 10.074 1.3285 1 + 22226 16639 14627 14632 22002 22002 0.041536663319675426 KDITEYYY 8 Unmodified _KDITEYYY_ 0 0 0 REV__nc|ENSG00000136521|O43674-2|NDUFB5 REV__nc|ENSG00000136521|O43674-2|NDUFB5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7806396484375 2 547.755672 1093.49679 0.32763 0.00017946 0.046417 2.5425E-05 0.37405 0.00020489 547.7556678887421 130.73 0.81816 130.73 130.3 131.12 0 57 22 3 0 0 0 0.73426 1 25910 25910 9.3474 0.75416 1 19606000 + 22227 16335 14628 14633 22003 22003 -0.04621662267481952 KDITEYYY 8 Unmodified _KDITEYYY_ 0 0 0 REV__nc|ENSG00000136521|O43674-2|NDUFB5 REV__nc|ENSG00000136521|O43674-2|NDUFB5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.773193359375 2 547.755672 1093.49679 0.29977 0.0001642 0.21679 0.00011875 0.51657 0.00028295 547.7556799189186 135.95 0.92741 131.12 130.66 131.59 -4.8307 65 25 3 0 0 0 0.66265 1 26254 26254 18.135 2.2878 1 22362000 + 22228 16335 14628 14633 22004 22004 -0.04621662267481952 KDITSLFR 8 Unmodified _KDITSLFR_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2758483886719 2 490.282192 978.549831 NaN NaN NaN NaN NaN NaN NaN 139.66 1 139.66 139.16 140.16 0 0 0 0 0.20135 1 27771 27771 24.021 3.5669 1 22229 7268 14629 14634 22005 22005 0.05969760305856653 KDIYKSLDL 9 Unmodified _KDIYKSLDL_ 0 0 0 REV__ENST00000591745.1_1_19:2328269-2328565:-|nuORF REV__ENST00000591745.1_1_19:2328269-2328565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7794799804688 2 547.808239 1093.60193 NaN NaN NaN NaN NaN NaN NaN 162.14 1 157 156.5 157.5 -5.1438 0 0 0 0.22823 1 31496 31496 15.248 2.206 1 + 22230 15997 14630 14635 22006 22006 0.058868789289590495 KDKAIKKFII 10 Unmodified _KDKAIKKFII_ 0 0 0 ENST00000480579.2_1_8:119774141-119774438:-|nuORF ENST00000480579.2_1_8:119774141-119774438:-|nuORF ENST00000480579.2_1_8:119774141-119774438:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2913818359375 2 602.394816 1202.77508 NaN NaN NaN NaN NaN NaN NaN 163.55 1 158.76 158.26 159.26 -4.7898 0 0 0 0.22588 1 32609 32609 3.5965 0.31518 1 22231 10358 14631 14636 22007 22007 0.18180289776023528 KDKAKELFC 9 Unmodified _KDKAKELFC_ 0 0 0 REV__ENSG00000278053|ENST00000617633|DDX52 REV__ENSG00000278053|ENST00000617633|DDX52 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2694091796875 2 541.289159 1080.56377 NaN NaN NaN NaN NaN NaN NaN 153.68 1 148.91 148.41 149.41 -4.7684 0 0 0 0.21469 1 30542 30542 19.257 2.3147 1 + 22232 19945 14632 14637 22008 22008 0.026706697426334358 KDKDEDQVH 9 Unmodified _KDKDEDQVH_ 0 0 0 ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1 ENST00000472190.5_1_1:233765551-233807273:+|nuORF ENST00000472190.5_1_1:233765551-233807273:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 557.3267211914062 2 557.262185 1112.50982 NaN NaN NaN NaN NaN NaN NaN 166.69 1 161.74 161.24 162.24 -4.9484 0 0 0 0.23508 1 32693 32693 7.2892 0.56607 1 22233 3949 14633 14638 22009 22009 -0.04193831155384942 KDKDKKEAPAD 11 Unmodified _KDKDKKEAPAD_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000496925.5_1_3:184023699-184025408:+|nuORF nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7611083984375 2 622.827692 1243.64083 NaN NaN NaN NaN NaN NaN NaN 166.23 1 161.29 160.79 161.79 -4.9484 0 0 0 0.15611 1 32549 32549 27.223 7.8613 1 22234 6390 14634 14639 22010 22010 0.028755594926451522 KDKEKHGYF 9 Unmodified _KDKEKHGYF_ 0 0 0 REV__ENSG00000269058|ENST00000269881|CALR3 REV__ENSG00000269058|ENST00000269881|CALR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3110961914062 2 576.29583 1150.57711 NaN NaN NaN NaN NaN NaN NaN 157.64 1 152.85 152.35 153.35 -4.7885 0 0 0 0.23508 1 31350 31350 9.3831 2.66 1 + 22235 19910 14635 14640 22011 22011 0.007842438462375867 KDKEPKEKDQ 10 Unmodified _KDKEPKEKDQ_ 0 0 0 REV__ENSG00000163602|ENST00000477973|RYBP REV__ENSG00000163602|ENST00000477973|RYBP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7783203125 2 622.827692 1243.64083 NaN NaN NaN NaN NaN NaN NaN 166.27 1 161.32 160.82 161.82 -4.9484 0 0 0 0.22559 1 32562 32562 17.113 0.96379 1 + 22236 17587 14636 14641 22012 22012 0.028755594926678896 KDKFETYH 8 Unmodified _KDKFETYH_ 0 0 0 tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1 tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1 tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.0728454589844 3 356.510063 1066.50836 -0.20513 -7.3129E-05 0.13361 4.7634E-05 -0.071515 -2.5496E-05 356.51014351843463 31.717 0.4197 29.568 29.409 29.829 -2.1483 20 11 2 0 0 0 1.0248 1 5498 5498 1.4819 1.1313 1 691110 22237 26442 14637 14642 22013 22013 -0.022234204534925084 KDKFETYH 8 Unmodified _KDKFETYH_ 0 0 0 tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1 tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1 tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 356.510063 1066.50836 -0.011138 -3.9707E-06 1.3709 0.00048875 1.3598 0.00048478 356.50996723491573 31.797 0.53048 29.567 29.268 29.798 -2.2305 -0.00089253 0.00091104 NaN 1.4819 35 14 4 NaN NaN NaN NaN 0 NaN NaN 0 1045000 22238 26442 14637 14642 -0.022234204534925084 KDKFKVARIR 10 Unmodified _KDKFKVARIR_ 0 0 0 tr|U7T543|U7T543_FUSNUProbableseptumsite-determiningproteinMinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=minCPE=3SV=1 tr|U7T543|U7T543_FUSNUProbableseptumsite-determiningproteinMinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=minCPE=3SV=1 tr|U7T543|U7T543_FUSNUProbableseptumsite-determiningproteinMinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=minCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7601318359375 2 630.898589 1259.78262 NaN NaN NaN NaN NaN NaN NaN 168.25 1 168.25 167.75 168.75 0 0 0 0 2.8426 1 34441 34441 0.013265 0.011884 1 22239 26449 14638 14643 22014 22014 0.1631244209631859 KDKIAEIHAK 10 Unmodified _KDKIAEIHAK_ 0 0 0 REV__tr|U7SKY7|U7SKY7_FUSNURibonucleaseHIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnhBPE=3SV=1 REV__tr|U7SKY7|U7SKY7_FUSNURibonucleaseHIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnhBPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3158569335938 2 576.840405 1151.66626 0.25056 0.00014453 -3.107 -0.0017922 -2.8564 -0.0016477 576.83933038015 62.294 0.52549 58.924 58.816 59.341 -3.3694 14 14 2 0 0 0 0.65108 1 11639 11639 16.149 1.7437 1 2324800 + 22240 24937 14639 14644 22015 22015 0.09649078805750833 KDKKHKKRKHR 11 Unmodified _KDKKHKKRKHR_ 0 0 0 ENSG00000165632|ENST00000344293|TAF3 ENSG00000165632|ENST00000344293|TAF3 ENSG00000165632|ENST00000344293|TAF3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 744.9718017578125 2 744.970942 1487.92733 NaN NaN NaN NaN NaN NaN NaN 165.07 1 160.12 159.62 160.62 -4.9484 0 0 0 0.23698 1 32232 32232 1.0715 0.76443 1 22241 5645 14640 14645 22016 22016 0.20288503296137606 KDKKKKKRKT 10 Unmodified _KDKKKKKRKT_ 0 0 0 REV__nc|ENSG00000105058|Q9Y421-2|FAM32A REV__nc|ENSG00000105058|Q9Y421-2|FAM32A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 644.4388427734375 2 644.432796 1286.85104 NaN NaN NaN NaN NaN NaN NaN 167.24 1 162.35 161.85 162.85 -4.8916 0 0 0 0.22588 1 32864 32864 3.5965 2.267 1 + 22242 14960 14641 14646 22017 22017 0.21908686676147227 KDKKKKKRS 9 Unmodified _KDKKKKKRS_ 0 0 0 REV__nc|ENSG00000105058|Q9Y421-3|FAM32A REV__nc|ENSG00000105058|Q9Y421-3|FAM32A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 573.3765258789062 2 573.377489 1144.74043 NaN NaN NaN NaN NaN NaN NaN 168.86 1 168.86 168.36 169.36 0 0 0 0 0.23508 1 34621 34621 4.3292 1.334 1 + 22243 23988 14642 14647 22018 22018 0.17384466687940403 KDKKKRLV 8 Unmodified _KDKKKRLV_ 0 0 0 ENST00000417359.1_1_10:8094326-8094419:-|nuORF ENST00000417359.1_1_10:8094326-8094419:-|nuORF ENST00000417359.1_1_10:8094326-8094419:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.7773132324219 2 507.842751 1013.67095 NaN NaN NaN NaN NaN NaN NaN 153.5 1 148.73 148.23 149.23 -4.7684 0 0 0 0.21486 1 30506 30506 2.3027 0.24298 1 22244 9627 14643 14648 22019 22019 0.16466007739188626 KDKKRQKKR 9 Unmodified _KDKKRQKKR_ 0 0 0 nc|ENSG00000134138|O14770-5|MEIS2;nc|ENSG00000134138|O14770-6|MEIS2;ENST00000561163.5_1_15:37328933-37390391:-|nuORF;nc|ENSG00000134138|O14770-7|MEIS2;nc|ENSG00000134138|O14770-8|MEIS2;nc|ENSG00000134138|O14770-3|MEIS2;nc|ENSG00000134138|O14770-2|MEIS2;nc|ENSG00000134138|O14770-4|MEIS2;ENSG00000134138|ENST00000561208|MEIS2 nc|ENSG00000134138|O14770-5|MEIS2 nc|ENSG00000134138|O14770-5|MEIS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 607.89697265625 2 607.893838 1213.77312 NaN NaN NaN NaN NaN NaN NaN 170.26 1 170.26 169.76 170.76 0 0 0 0 0.23508 1 35001 35001 8.7454 2.5396 1 22245 3829 14644 14649 22020 22020 0.17478673810774126 KDKKTYYYLFD 11 Unmodified _KDKKTYYYLFD_ 0 0 0 tr|U7STE8|U7STE8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01322PE=4SV=1 tr|U7STE8|U7STE8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01322PE=4SV=1 tr|U7STE8|U7STE8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01322PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.375244140625 2 742.377017 1482.73948 NaN NaN NaN NaN NaN NaN NaN 152.39 1 152.39 151.89 152.89 0 0 0 0 0.23429 1 30524 30524 4.897 0.36815 1 22246 26143 14645 14650 22021 22021 0.017421627376961624 KDKKTYYYLFD 11 Unmodified _KDKKTYYYLFD_ 0 0 0 tr|U7STE8|U7STE8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01322PE=4SV=1 tr|U7STE8|U7STE8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01322PE=4SV=1 tr|U7STE8|U7STE8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01322PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3748779296875 2 742.377017 1482.73948 NaN NaN NaN NaN NaN NaN NaN 148.4 1 143.69 143.19 144.19 -4.7095 0 0 0 0.23429 1 29467 29467 4.897 1.9018 1 22247 26143 14645 14650 22022 22022 0.017421627376961624 KDKLFKPS 8 Unmodified _KDKLFKPS_ 0 0 0 TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1;TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78802490234375 2 481.78711 961.559667 -0.31963 -0.00015399 0.51797 0.00024955 0.19834 9.5558E-05 481.78734156506437 66.549 0.66254 66.549 66.205 66.868 0 28 18 2 0 0 0 0.71876 1 12914 12914 11.64 1.5664 1 3272100 22248 5461 14646 14651 22023 22023 0.07734948311224343 KDKLQYGMLE 10 Unmodified _KDKLQYGMLE_ 0 0 0 ENST00000211314.4_1_6:52550851-52550977:+|nuORF ENST00000211314.4_1_6:52550851-52550977:+|nuORF ENST00000211314.4_1_6:52550851-52550977:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 612.8161010742188 2 612.818281 1223.62201 NaN NaN NaN NaN NaN NaN NaN 168.46 1 163.67 163.17 164.17 -4.7898 0 0 0 0.22583 1 34053 34053 13.906 2.4113 1 22249 8095 14647 14652 22024 22024 0.01914306597268478 KDKLSGIRKVI 11 Unmodified _KDKLSGIRKVI_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 628.9055786132812 2 628.906079 1255.79761 NaN NaN NaN NaN NaN NaN NaN 170.41 1 165.62 165.12 166.12 -4.7898 0 0 0 0.23698 1 34585 34585 2.4985 0.84587 1 22250 7767 14648 14653 22025 22025 0.1799388917363558 KDKNARRKE 9 Unmodified _KDKNARRKE_ 0 0 0 MEIS2|p.K275Nfs*12|1|0.27|ENSG00000134138|chr15:37036889-37036889|T/-|frameshift_variant MEIS2|p.K275Nfs*12|1|0.27|ENSG00000134138|chr15:37036889-37036889|T/-|frameshift_variant MEIS2|p.K275Nfs*12|1|0.27|ENSG00000134138|chr15:37036889-37036889|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 572.7383422851562 2 572.830903 1143.64725 0.29333 0.00016803 -0.29614 -0.00016964 -0.00281 -1.6097E-06 573.3332201961084 165.34 0.16989 165.34 165.19 165.36 0 5 4 2 0 0 0 0.85111 1 33504 33504 6.7232 0 1 13492000 22251 12127 14649 14654 22026 22026 0.08117542234708708 KDKPENITPSN 11 Unmodified _KDKPENITPSN_ 0 0 0 REV__ENST00000438197.2_1_11:85444955-85468786:-|nuORF REV__ENST00000438197.2_1_11:85444955-85468786:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 621.8696899414062 2 621.819867 1241.62518 NaN NaN NaN NaN NaN NaN NaN 166.48 1 161.69 161.19 162.19 -4.7898 0 0 0 0.21872 1 33455 33455 14.405 2.9107 1 + 22252 16396 14650 14655 22027 22027 0.014032729756081608 KDKPNLQDH 9 Unmodified _KDKPNLQDH_ 0 0 0 REV__nc|ENSG00000125485|Q9H8H2-2|DDX31 REV__nc|ENSG00000125485|Q9H8H2-2|DDX31 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7667846679688 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 163.58 1 158.52 158.02 159.02 -5.0648 0 0 0 0.23277 1 31837 31837 13.906 3.0821 1 + 22253 24024 14651 14656 22028 22028 0.008587693238041538 KDKPPAPKYS 10 Unmodified _KDKPPAPKYS_ 0 0 0 REV__CCDC92|p.I268Sfs*40|1|0.29|ENSG00000119242|chr12:123937253-123937253|G/-|frameshift_variant REV__CCDC92|p.I268Sfs*40|1|0.29|ENSG00000119242|chr12:123937253-123937253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 565.822509765625 2 565.813856 1129.61316 NaN NaN NaN NaN NaN NaN NaN 171.21 1 166.34 165.84 166.84 -4.873 0 0 0 0.22588 1 33922 33922 12.241 0.74595 1 + 22254 13306 14652 14657 22029 22029 0.05353701023091162 KDKQTMSLD 9 Unmodified _KDKQTMSLD_ 0 0 0 REV__nc|ENSG00000090615|Q08378-2|GOLGA3 REV__nc|ENSG00000090615|Q08378-2|GOLGA3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.280029296875 2 533.265881 1064.51721 NaN NaN NaN NaN NaN NaN NaN 144.78 1 139.71 139.21 140.21 -5.0671 0 0 0 0.23508 1 27943 27943 9.3831 0 1 + 22255 14551 14653 14658 22030 22030 -0.01246814879300473 KDKRLFRFLFL 11 Unmodified _KDKRLFRFLFL_ 0 0 0 REV__ENST00000436551.1_1_2:42160642-42160720:-|nuORF REV__ENST00000436551.1_1_2:42160642-42160720:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3871459960938 2 741.950821 1481.88709 NaN NaN NaN NaN NaN NaN NaN 145.53 1 140.43 139.93 140.93 -5.0982 0 0 0 0.2367 1 28123 28123 2.9952 0.26005 1 + 22256 21672 14654 14659 22031 22031 0.1654214385303021 KDKRSRKRK 9 Unmodified _KDKRSRKRK_ 0 0 0 REV__ENST00000369171.3_1_1:197716168-197716336:-|nuORF REV__ENST00000369171.3_1_1:197716168-197716336:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 601.3960571289062 2 601.383637 1200.75272 NaN NaN NaN NaN NaN NaN NaN 167.55 1 162.66 162.16 163.16 -4.8916 0 0 0 0.23508 1 32968 32968 3.9444 0 1 + 22257 20955 14655 14660 22032 22032 0.1603750315096022 KDKSFTIKK 9 Unmodified _KDKSFTIKK_ 0 0 0 REV__tr|U7T228|U7T228_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00447PE=4SV=1 REV__tr|U7T228|U7T228_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00447PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7860717773438 2 547.832049 1093.64954 NaN NaN NaN NaN NaN NaN NaN 165.37 1 160.39 159.89 160.89 -4.9811 0 0 0 0.23277 1 32315 32315 13.906 0 1 + 22258 25305 14656 14661 22033 22033 0.10646577919806077 KDKWFMNNY 9 Unmodified _KDKWFMNNY_ 0 0 0 REV__tr|U7SSP6|U7SSP6_FUSNUProlineiminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01336PE=3SV=1 REV__tr|U7SSP6|U7SSP6_FUSNUProlineiminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01336PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7670288085938 2 623.289691 1244.56483 0.343 0.00021379 2.4836 0.001548 2.8266 0.0017618 623.7930231905559 145.43 0.13821 140.37 140.29 140.42 -5.0671 5 3 2 0 0 0 0.85111 1 28104 28104 10.824 5.0921 1 1522100 + 22259 25062 14657 14662 22034 22034 -0.047671158884440956 KDLAETSGNF 10 Unmodified _KDLAETSGNF_ 0 0 0 REV__ENSG00000108819|ENST00000612501|PPP1R9B REV__ENSG00000108819|ENST00000612501|PPP1R9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2606201171875 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 149.19 1 143.99 143.49 144.49 -5.1994 0 0 0 0.22588 1 28897 28897 12.241 0.60036 1 + 22260 15139 14658 14663 22035 22035 -0.028280455243020697 KDLCPSEGESD 11 Unmodified _KDLCPSEGESD_ 0 0 0 nc|ENSG00000135111|O15119-3|TBX3;TBX3|p.S443Afs*194|1|1.0|ENSG00000135111|chr12:114674609-114674610|-/ATGGTGGCGGGGCT|frameshift_variant;TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3 nc|ENSG00000135111|O15119-3|TBX3 nc|ENSG00000135111|O15119-3|TBX3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.250244140625 2 590.245343 1178.47613 NaN NaN NaN NaN NaN NaN NaN 149.57 1 144.37 143.87 144.87 -5.1994 0 0 0 0.23429 1 28973 28973 4.897 0.56777 1 22261 3902 14659 14664 22036 22036 -0.10596620709452509 KDLDVRFS 8 Unmodified _KDLDVRFS_ 0 0 0 REV__nc|ENSG00000023902|Q53GL0-2|PLEKHO1 REV__nc|ENSG00000023902|Q53GL0-2|PLEKHO1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2651062011719 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 171.11 1 166.23 165.73 166.73 -4.873 0 0 0 0.21486 1 33897 33897 12.532 2.4576 1 + 22262 13996 14660 14665 22037 22037 0.02332883409144415 KDLEELLQK 9 Unmodified _KDLEELLQK_ 0 0 0 REV__nc|ENSG00000131373|Q9UJ83-3|HACL1 REV__nc|ENSG00000131373|Q9UJ83-3|HACL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.09210205078125 3 372.548406 1114.62339 -0.18939 -7.0555E-05 0.03917 1.4593E-05 -0.15022 -5.5963E-05 372.5483837266399 114.48 0.85061 114.48 114.04 114.89 0 91 23 5 0 0 0 0.86693 1 22462 22462 3.8763 0 1 78423000 + 22263 16069 14661 14666 22038 22038 0.0706626395767671 KDLNLMDI 8 Unmodified _KDLNLMDI_ 0 0 0 nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.T881Hfs*2|2|0.3|ENSG00000145703|chr5:76665133-76665133|A/-|frameshift_variant;ENST00000514579.1_1_5:75950824-75955864:+|nuORF nc|ENSG00000145703|Q13576-3|IQGAP2 nc|ENSG00000145703|Q13576-3|IQGAP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2549743652344 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 118.23 1 113.73 113.23 114.23 -4.502 0 0 0 0.20618 1 23308 23308 20.454 0 1 22264 4614 14662 14667 22039 22039 0.01319005442917387 KDLPDRHLT 9 Unmodified _KDLPDRHLT_ 0 0 0 ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.769775390625 2 547.80128 1093.58801 NaN NaN NaN NaN NaN NaN NaN 144.97 1 140.3 139.8 140.8 -4.6694 0 0 0 0.23508 1 28725 28725 10.074 0 1 22265 124 14663 14668 22040 22040 0.04495646220493654 KDLPQAQRM 9 Unmodified _KDLPQAQRM_ 0 0 0 CON__Q3SZV7 CON__Q3SZV7 CON__Q3SZV7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7708129882812 2 543.789858 1085.56516 NaN NaN NaN NaN NaN NaN NaN 145.26 1 140.19 139.69 140.69 -5.0671 0 0 0 0.22962 1 28062 28062 14.838 0.93222 1 + 22266 697 14664 14669 22041 22041 0.0258030383138248 KDLPSSLF 8 Unmodified _KDLPSSLF_ 0 0 0 ENST00000367210.2_2_1:203771369-203771417:+|nuORF ENST00000367210.2_2_1:203771369-203771417:+|nuORF ENST00000367210.2_2_1:203771369-203771417:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7493896484375 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 143.56 1 143.56 143.06 144.06 0 0 0 0 0.20896 1 28650 28650 18.135 1.1927 1 22267 9062 14665 14670 22042 22042 0.02930980148892104 KDLQDNHFY 9 Unmodified _KDLQDNHFY_ 0 0 0 ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2722778320312 2 590.275095 1178.53564 NaN NaN NaN NaN NaN NaN NaN 126.87 1 126.87 126.37 127.37 0 0 0 0 0.23508 1 25041 25041 4.3292 0.38484 1 22268 7735 14666 14671 22043 22043 -0.04648936913099533 KDLQDNHFY 9 Unmodified _KDLQDNHFY_ 0 0 0 ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2725219726562 2 590.275095 1178.53564 NaN NaN NaN NaN NaN NaN NaN 160.32 1 155.52 155.02 156.02 -4.7952 0 0 0 0.22621 1 31881 31881 15.847 2.8047 1 22269 7735 14666 14671 22044 22044 -0.04648936913099533 KDLQDNHFY 9 Unmodified _KDLQDNHFY_ 0 0 0 ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2742309570312 2 590.275095 1178.53564 NaN NaN NaN NaN NaN NaN NaN 153.22 1 147.96 147.46 148.46 -5.2669 0 0 0 0.23508 1 29701 29701 12.532 4.9226 1 22270 7735 14666 14671 22045 22045 -0.04648936913099533 KDLQDNHFY 9 Unmodified _KDLQDNHFY_ 0 0 0 ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2764282226562 2 590.275095 1178.53564 NaN NaN NaN NaN NaN NaN NaN 154.67 1 149.38 148.88 149.88 -5.2854 0 0 0 0.23508 1 29993 29993 9.3831 3.6513 1 22271 7735 14666 14671 22046 22046 -0.04648936913099533 KDLRKKLFR 9 Unmodified _KDLRKKLFR_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1;BMS1|p.R1250W|1|0.36|ENSG00000165733|chr10:42830995-42830995|C/T|missense_variant ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.299560546875 2 602.387857 1202.76116 NaN NaN NaN NaN NaN NaN NaN 143.86 1 138.94 138.44 139.44 -4.9127 0 0 0 0.23277 1 27767 27767 13.906 3.0821 1 22272 5659 14667 14672 22047 22047 0.1678905706758087 KDLRVEEYK 9 Unmodified _KDLRVEEYK_ 0 0 0 REV__tr|U7T8L1|U7T8L1_FUSNUPhagetailsheathproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00090PE=4SV=1 REV__tr|U7T8L1|U7T8L1_FUSNUPhagetailsheathproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00090PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.2906188964844 3 393.883789 1178.62954 -0.26255 -0.00010342 -0.27148 -0.00010693 -0.53403 -0.00021035 393.8836734776268 47.46 0.69514 44.591 44.251 44.946 -2.869 61 19 4 0 0 0 0.8606 1 8950 8950 0.77653 0 1 31516000 + 22273 25472 14668 14673 22048 22048 0.04736782189161204 KDLRVMRYK 9 Unmodified _KDLRVMRYK_ 0 0 0 REV__tr|U7T6K8|U7T6K8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00279PE=4SV=1 REV__tr|U7T6K8|U7T6K8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00279PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 604.8727416992188 2 604.85025 1207.68595 NaN NaN NaN NaN NaN NaN NaN 171.19 1 166.4 165.9 166.9 -4.7898 0 0 0 0.23508 1 34789 34789 8.1555 0.8663 1 + 22274 25447 14669 14674 22049 22049 0.09041131544859127 KDLSALNNELK 11 Unmodified _KDLSALNNELK_ 0 0 0 tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1 tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1 tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7570190429688 2 622.845884 1243.67722 0.40305 0.00025104 -4.2889 -0.0026713 -3.8859 -0.0024203 623.3434430616746 146.88 0.13708 146.88 146.77 146.91 0 5 3 2 0 0 0 0.71397 1 29370 29370 10.8 0 1 2843400 22275 26389 14670 14675 22050 22050 0.0651243638935739 KDLSALNNELK 11 Unmodified _KDLSALNNELK_ 0 0 0 tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1 tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1 tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7526245117188 2 622.845884 1243.67722 0.38606 0.00024046 -2.0266 -0.0012622 -1.6405 -0.0010218 623.3442820638675 153.75 0.17226 148.49 148.4 148.57 -5.2669 6 4 2 0 0 0 0.93119 1 29797 29797 13.615 5.4593 1 3066100 22276 26389 14670 14675 22051 22051 0.0651243638935739 KDLSTFRSY 9 Unmodified _KDLSTFRSY_ 0 0 0 REV__ENSG00000187446|ENST00000334660|CHP1 REV__ENSG00000187446|ENST00000334660|CHP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 373.1358947753906 3 372.860984 1115.56112 -0.30374 -0.00011325 0.10715 3.9954E-05 -0.19658 -7.3298E-05 372.86100371427364 34.008 0.52785 31.792 31.492 32.02 -2.2158 48 14 4 0 0 0 0.8799 1 5893 5893 0.96228 0 1 10320000 + 22277 19088 14671 14676 22052 22052 0.007965376093352461 KDLSTFRSY 9 Unmodified _KDLSTFRSY_ 0 0 0 REV__ENSG00000187446|ENST00000334660|CHP1 REV__ENSG00000187446|ENST00000334660|CHP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 372.860984 1115.56112 -0.33389 -0.00012449 0.1697 6.3273E-05 -0.16419 -6.1222E-05 372.8609826682388 34.073 0.51794 31.756 31.497 32.015 -2.3175 -0.031316 0.00018213 NaN 0.96228 47 14 4 NaN NaN NaN NaN 0 NaN NaN 0 13252000 + 22278 19088 14671 14676 0.007965376093352461 KDLTVRPS 8 Unmodified _KDLTVRPS_ 0 0 0 REV__nc|ENSG00000261371|P16284-5|PECAM1 REV__nc|ENSG00000261371|P16284-5|PECAM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2388610839844 2 458.266542 914.51853 NaN NaN NaN NaN NaN NaN NaN 142.16 1 137.14 136.64 137.64 -5.0261 0 0 0 0.20462 1 27393 27393 21.747 0.87544 1 + 22279 19888 14672 14677 22053 22053 0.05785187271760606 KDLVKGTSQIR 11 Unmodified _KDLVKGTSQIR_ 0 0 0 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7755126953125 2 622.869694 1243.72483 NaN NaN NaN NaN NaN NaN NaN 141.26 1 136.61 136.11 137.11 -4.6493 0 0 0 0.23519 1 27899 27899 4.1895 0.59301 1 + 22280 25044 14673 14678 22054 22054 0.11272135380227155 KDLVKRKVFK 10 Unmodified _KDLVKRKVFK_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.752685546875 2 630.911165 1259.80778 NaN NaN NaN NaN NaN NaN NaN 26.214 1 24.292 23.792 24.792 -1.9222 0 0 0 0.22588 1 4333 4333 1.4819 1.0812 1 + 22281 19227 14674 14679 22055 22055 0.18826496898873302 KDLVLKGHRL 10 Unmodified _KDLVLKGHRL_ 0 0 0 REV__nc|ENSG00000100379|Q8N5Z5-2|KCTD17 REV__nc|ENSG00000100379|Q8N5Z5-2|KCTD17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2547607421875 2 589.87204 1177.72953 0.33638 0.00019842 -4.0995 -0.0024182 -3.7631 -0.0022198 589.8670415383382 147.45 0.13597 142.39 142.28 142.42 -5.0595 5 3 2 0 0 0 0.91149 1 28528 28528 3.2813 0.28607 1 1016600 + 22282 14705 14675 14680 22056 22056 0.14777064313648225 KDLVLLLQK 9 Unmodified _KDLVLLLQK_ 0 0 0 PCED1A|p.G270Afs*21|1|0.08|ENSG00000132635|chr20:2838264-2838264|C/-|frameshift_variant;nc|ENSG00000132635|Q9H1Q7-3|PCED1A;nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000132635|ENST00000360652|PCED1A;PCED1B|p.E53Sfs*2|2|0.31|ENSG00000179715|chr12:47235215-47235215|G/-|frameshift_variant;nc|ENSG00000132635|Q9H1Q7-4|PCED1A;ENSG00000179715|ENST00000546455|PCED1B PCED1A|p.G270Afs*21|1|0.08|ENSG00000132635|chr20:2838264-2838264|C/-|frameshift_variant PCED1A|p.G270Afs*21|1|0.08|ENSG00000132635|chr20:2838264-2838264|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0669860839844 3 357.237504 1068.69068 NaN NaN NaN NaN NaN NaN NaN 143.59 1 143.59 143.09 144.09 0 0 0 0 0.23508 1 28659 28659 2.086 0 1 22283 3750 14676 14681 22057 22057 0.1590833895927517 KDLVQARQL 9 Unmodified _KDLVQARQL_ 0 0 0 REV__ENST00000588404.5_1_19:38907704-38910742:-|nuORF REV__ENST00000588404.5_1_19:38907704-38910742:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.54937744140625 3 357.548741 1069.62439 -0.78098 -0.00027924 1.094 0.00039115 0.31299 0.00011191 357.5491161959764 108.27 0.58769 103.95 103.69 104.28 -4.32 27 16 2 0 0 0 0.52027 1 21302 21302 18.373 3.1246 1 1475500 + 22284 18247 14677 14682 22058 22058 0.09236523117237994 KDLVQARQL 9 Unmodified _KDLVQARQL_ 0 0 0 REV__ENST00000588404.5_1_19:38907704-38910742:-|nuORF REV__ENST00000588404.5_1_19:38907704-38910742:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5489501953125 3 357.548741 1069.62439 -0.0053451 -1.9111E-06 0.3061 0.00010944 0.30075 0.00010753 357.5487745644862 108.26 0.41824 104.13 103.91 104.33 -4.135 21 11 2 0 0 0 0.46796 1 20810 20810 21.59 3.2171 1 1265700 + 22285 18247 14677 14682 22059 22059 0.09236523117237994 KDLVQARQL 9 Unmodified _KDLVQARQL_ 0 0 0 REV__ENST00000588404.5_1_19:38907704-38910742:-|nuORF REV__ENST00000588404.5_1_19:38907704-38910742:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.548741 1069.62439 -0.0053451 -1.9111E-06 0.3061 0.00010944 0.30075 0.00010753 357.5487745644862 108.26 0.41824 104.13 103.91 104.33 -4.135 0.085774 -0.00035038 NaN 21.59 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1265700 + 22286 18247 14677 14682 0.09236523117237994 KDLWDKNAP 9 Unmodified _KDLWDKNAP_ 0 0 0 REV__SPTBN2|p.A1327P|1|0.48|ENSG00000173898|chr11:66698674-66698674|C/G|missense_variant REV__SPTBN2|p.A1327P|1|0.48|ENSG00000173898|chr11:66698674-66698674|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7817993164062 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 168.42 1 168.42 167.92 168.92 0 0 0 0 0.23277 1 34490 34490 13.906 0 1 + 22287 24731 14678 14683 22060 22060 0.011205549548776617 KDLWDKNAP 9 Unmodified _KDLWDKNAP_ 0 0 0 REV__SPTBN2|p.A1327P|1|0.48|ENSG00000173898|chr11:66698674-66698674|C/G|missense_variant REV__SPTBN2|p.A1327P|1|0.48|ENSG00000173898|chr11:66698674-66698674|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7837524414062 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 167.24 1 162.45 161.95 162.95 -4.7898 0 0 0 0.22621 1 33706 33706 15.847 5.0233 1 + 22288 24731 14678 14683 22061 22061 0.011205549548776617 KDLWDKNAP 9 Unmodified _KDLWDKNAP_ 0 0 0 REV__SPTBN2|p.A1327P|1|0.48|ENSG00000173898|chr11:66698674-66698674|C/G|missense_variant REV__SPTBN2|p.A1327P|1|0.48|ENSG00000173898|chr11:66698674-66698674|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78369140625 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 167.55 1 162.76 162.26 163.26 -4.7898 0 0 0 0.21469 1 33804 33804 19.257 1.1106 1 + 22289 24731 14678 14683 22062 22062 0.011205549548776617 KDLWDKNAP 9 Unmodified _KDLWDKNAP_ 0 0 0 REV__SPTBN2|p.A1327P|1|0.48|ENSG00000173898|chr11:66698674-66698674|C/G|missense_variant REV__SPTBN2|p.A1327P|1|0.48|ENSG00000173898|chr11:66698674-66698674|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7803344726562 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 171.33 1 166.41 165.91 166.91 -4.9149 0 0 0 0.23277 1 33919 33919 13.906 0.86358 1 + 22290 24731 14678 14683 22063 22063 0.011205549548776617 KDLWKRIQ 8 Unmodified _KDLWKRIQ_ 0 0 0 REV__ENSG00000070061|ENST00000374647|ELP1 REV__ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7962646484375 2 543.824558 1085.63456 0.33572 0.00018257 1.1531 0.00062708 1.4888 0.00080965 543.824122781597 136.99 0.16919 136.99 136.86 137.03 0 5 4 2 0 0 0 0.72428 1 27145 27145 10.824 1.4408 1 2788700 + 22291 14250 14679 14684 22064 22064 0.09517130842482402 KDLYDRDKKRF 11 Unmodified _KDLYDRDKKRF_ 0 0 0 REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF;REV__ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4013061523438 2 742.404432 1482.79431 NaN NaN NaN NaN NaN NaN NaN 156.28 1 151 150.5 151.5 -5.2854 0 0 0 0.23519 1 30316 30316 4.1895 1.1943 1 + 22292 17933;13052 14680 14685 22065 22065 0.07222594328936793 KDMDYIRF 8 Unmodified _KDMDYIRF_ 0 0 0 REV__ENSG00000221823|ENST00000234310|PPP3R1 REV__ENSG00000221823|ENST00000234310|PPP3R1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7742919921875 2 544.265684 1086.51682 0.338 0.00018396 0.44085 0.00023994 0.77885 0.0004239 544.2658612929067 146.26 0.52328 146.26 145.91 146.43 0 20 14 2 0 0 0 0.97173 1 29241 29241 7.9102 0 1 2403100 + 22293 19705 14681 14686 22066 22066 -0.022981898084935892 KDMGTVQAVFA 11 Unmodified _KDMGTVQAVFA_ 0 0 0 REV__tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1 REV__tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 583.77734375 2 583.797349 1165.58014 0.36376 0.00021236 -0.09585 -5.5957E-05 0.26791 0.00015641 583.7973388010471 150.51 0.80962 145.78 145.39 146.2 -4.7323 69 22 4 0 0 0 0.67257 1 29839 29839 13.615 4.0709 1 30151000 + 22294 25105 14682 14687 22067 22067 0.0039775090874627494 KDMGTVQAVFA 11 Unmodified _KDMGTVQAVFA_ 0 0 0 REV__tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1 REV__tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 583.797349 1165.58014 0.32722 0.00019103 -0.22057 -0.00012877 0.10665 6.2263E-05 583.797262061394 146.06 0.7001 146.06 145.65 146.35 0 0.20249 8.3992E-06 NaN 13.615 55 19 4 NaN NaN NaN NaN 0 NaN NaN 0 14314000 + 22295 25105 14682 14687 0.0039775090874627494 KDMGTVQAVFA 11 Unmodified _KDMGTVQAVFA_ 0 0 0 REV__tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1 REV__tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 583.797349 1165.58014 0.36376 0.00021236 -0.09585 -5.5957E-05 0.26791 0.00015641 583.7973388010471 150.51 0.80962 145.78 145.39 146.2 -4.7323 -0.085913 0.00015402 NaN 13.615 69 22 4 NaN NaN NaN NaN 0 NaN NaN 0 30151000 + 22296 25105 14682 14687 0.0039775090874627494 KDMGTVQAVFA 11 Unmodified _KDMGTVQAVFA_ 0 0 0 REV__tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1 REV__tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 583.797349 1165.58014 0.41314 0.00024119 -0.12361 -7.2163E-05 0.28953 0.00016903 583.7972800059307 151.03 0.88179 145.79 145.41 146.29 -5.2365 -0.069055 0.00012161 NaN 13.615 73 24 4 NaN NaN NaN NaN 0 NaN NaN 0 29237000 + 22297 25105 14682 14687 0.0039775090874627494 KDMGTVQAVFA 11 Unmodified _KDMGTVQAVFA_ 0 0 0 REV__tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1 REV__tr|U7STG7|U7STG7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01403PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 583.797349 1165.58014 0.36849 0.00021513 -0.51473 -0.0003005 -0.14624 -8.5374E-05 583.7972755938912 150.99 0.98697 145.81 145.26 146.25 -5.1759 -0.047518 -0.00033506 NaN 13.615 79 27 5 NaN NaN NaN NaN 0 NaN NaN 0 19060000 + 22298 25105 14682 14687 0.0039775090874627494 KDMLERFR 8 Unmodified _KDMLERFR_ 0 0 0 REV__ENSG00000172766|ENST00000379406|NAA16 REV__ENSG00000172766|ENST00000379406|NAA16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7880859375 2 547.792401 1093.57025 NaN NaN NaN NaN NaN NaN NaN 149.27 1 144.15 143.65 144.65 -5.1204 0 0 0 0.21486 1 28922 28922 9.3831 1.7742 1 + 22299 18306 14683 14688 22068 22068 0.02720607694004684 KDMLMLRY 8 Unmodified _KDMLMLRY_ 0 0 0 REV__nc|ENSG00000127329|P23467-4|PTPRB REV__nc|ENSG00000127329|P23467-4|PTPRB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.0728759765625 3 357.189279 1068.54601 -1.6834 -0.0006013 1.1566 0.00041314 -0.52678 -0.00018816 357.18958639103073 19.549 0.31098 17.914 17.739 18.049 -1.6351 20 8 3 0 0 0 1.0248 1 2981 2981 1.4819 0 1 817190 + 22300 15883 14684 14689 22069 22069 0.014476312161150418 KDMLPFTK 8 Unmodified _KDMLPFTK_ 0 0 0 WDR64|p.L1065*|1|0.34|ENSG00000162843|chr1:241801161-241801161|T/-|frameshift_variant;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64 WDR64|p.L1065*|1|0.34|ENSG00000162843|chr1:241801161-241801161|T/-|frameshift_variant WDR64|p.L1065*|1|0.34|ENSG00000162843|chr1:241801161-241801161|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26702880859375 2 490.267696 978.520839 NaN NaN NaN NaN NaN NaN NaN 170.14 1 170.14 169.64 170.64 0 0 0 0 0.2074 1 34969 34969 19.439 0 1 22301 5374 14685 14690 22070 22070 0.030718996852101554 KDMQTCQQDY 10 Unmodified _KDMQTCQQDY_ 0 0 0 REV__ENSG00000178177|ENST00000635767|LCORL REV__ENSG00000178177|ENST00000635767|LCORL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.777587890625 2 630.255188 1258.49582 0.45793 0.00028861 0.54797 0.00034536 1.0059 0.00063397 630.7587342242942 135.38 0.1756 130.55 130.42 130.59 -4.8307 6 4 2 0 0 0 0.74994 1 26040 26040 5.7319 1.7875 1 951900 + 22302 18591 14686 14691 22071 22071 -0.12308567970308104 KDMRQNDSLP 10 Unmodified _KDMRQNDSLP_ 0 0 0 REV__ENST00000405444.3_1_4:38134403-38138953:+|nuORF REV__ENST00000405444.3_1_4:38134403-38138953:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2754516601562 2 602.292962 1202.57137 NaN NaN NaN NaN NaN NaN NaN 167.34 1 162.39 161.89 162.89 -4.948 0 0 0 0.22583 1 32907 32907 13.906 1.6654 1 + 22303 14194 14687 14692 22072 22072 -0.021812227277450802 KDMRQNDSLP 10 Unmodified _KDMRQNDSLP_ 0 0 0 REV__ENST00000405444.3_1_4:38134403-38138953:+|nuORF REV__ENST00000405444.3_1_4:38134403-38138953:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2948608398438 2 602.292962 1202.57137 NaN NaN NaN NaN NaN NaN NaN 167.68 1 162.74 162.24 163.24 -4.948 0 0 0 0.22588 1 33010 33010 9.3831 1.473 1 + 22304 14194 14687 14692 22073 22073 -0.021812227277450802 KDMSGWKK 8 Unmodified _KDMSGWKK_ 0 0 0 REV__ENST00000309784.8_1_3:160155667-160155736:-|nuORF REV__ENST00000309784.8_1_3:160155667-160155736:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2567138671875 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 171.29 1 166.37 165.87 166.87 -4.9149 0 0 0 0.21486 1 33909 33909 12.532 1.7076 1 + 22305 20471 14688 14693 22074 22074 0.005578448826440763 KDNCADVFAV 10 Unmodified _KDNCADVFAV_ 0 0 0 REV__CCDC141|p.A1273V|1|0.4|ENSG00000163492|chr2:178837401-178837401|G/A|missense_variant REV__CCDC141|p.A1273V|1|0.4|ENSG00000163492|chr2:178837401-178837401|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.263671875 2 541.252774 1080.491 0.15095 8.1702E-05 0.16984 9.1928E-05 0.32079 0.00017363 541.2528373693539 60.017 0.66512 56.703 56.278 56.943 -3.3139 40 18 3 0 0 0 0.42569 1 11212 11212 29.082 6.3453 1 2852700 + 22306 13283 14689 14694 22075 22075 -0.04603084050813777 KDNDRYPY 8 Unmodified _KDNDRYPY_ 0 0 0 FGL2|p.S368Y|1|0.46|ENSG00000127951|chr7:77196496-77196496|G/T|missense_variant FGL2|p.S368Y|1|0.46|ENSG00000127951|chr7:77196496-77196496|G/T|missense_variant FGL2|p.S368Y|1|0.46|ENSG00000127951|chr7:77196496-77196496|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.55987548828125 3 357.501568 1069.48287 -0.69742 -0.00024933 1.018 0.00036393 0.32056 0.0001146 357.50199165478017 26.203 0.34965 24.281 24.086 24.436 -1.9222 15 9 2 0 0 0 1.0197 1 4308 4308 5.7319 2.1354 1 514430 22307 11815 14690 14695 22076 22076 -0.049088949759152456 KDNKYLSVK 9 Unmodified _KDNKYLSVK_ 0 0 0 REV__CON__Q3Y5Z3 REV__CON__Q3Y5Z3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7842407226562 2 547.813856 1093.61316 0.5761 0.00031559 -0.34722 -0.00019021 0.22887 0.00012538 547.8136024875474 99.408 0.63174 99.408 99.093 99.725 0 40 17 3 0 0 0 0.79696 1 19455 19455 19.626 7.3853 1 6073600 + + 22308 13547 14691 14696 22077 22077 0.07009701023071102 KDNKYLSVK 9 Unmodified _KDNKYLSVK_ 0 0 0 REV__CON__Q3Y5Z3 REV__CON__Q3Y5Z3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.773193359375 2 547.813856 1093.61316 0.26427 0.00014477 0.052475 2.8747E-05 0.31675 0.00017352 547.8137952742221 103.38 0.59877 99.029 98.716 99.315 -4.346 40 16 3 0 0 0 0.14836 1 19814 19814 47.732 0 1 6543800 + + 22309 13547 14691 14696 22078 22078 0.07009701023071102 KDNLNYVTK 9 Unmodified _KDNLNYVTK_ 0 0 0 REV__nc|ENSG00000005156|P49916-4|LIG3 REV__nc|ENSG00000005156|P49916-4|LIG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78271484375 2 547.795663 1093.57677 0.24163 0.00013236 0.041918 2.2963E-05 0.28354 0.00015532 547.7954019643138 142.13 0.69928 137.48 137.06 137.76 -4.6522 29 19 2 0 0 0 0.42842 1 28020 28020 1.2148 0 1 3382800 + 22310 13854 14692 14697 22079 22079 0.03372824126358864 KDNNYEDFVGW 11 Unmodified _KDNNYEDFVGW_ 0 0 0 REV__ENSG00000137975|ENST00000370565|CLCA2 REV__ENSG00000137975|ENST00000370565|CLCA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 693.8212890625 2 693.801674 1385.58879 NaN NaN NaN NaN NaN NaN NaN 174.95 1 170.06 169.56 170.56 -4.8916 0 0 0 0.2367 1 34852 34852 2.9952 0 1 + 22311 16425 14693 14698 22080 22080 -0.08857603921137525 KDPEQMDPAVM 11 Unmodified _KDPEQMDPAVM_ 0 0 0 ENST00000445604.6_1_9:66524022-66553326:-|nuORF;ENST00000591993.5_1_9:66523674-66553526:-|nuORF;ENST00000585533.1_1_9:66524022-66553526:-|nuORF ENST00000445604.6_1_9:66524022-66553326:-|nuORF ENST00000445604.6_1_9:66524022-66553326:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7513427734375 2 630.783581 1259.55261 NaN NaN NaN NaN NaN NaN NaN 136.43 1 131.79 131.29 132.29 -4.6399 0 0 0 0.22943 1 26920 26920 8.7454 2.0222 1 22312 9933 14694 14699 22081 22081 -0.06678520413834121 KDPLSANHSL 10 Unmodified _KDPLSANHSL_ 0 0 0 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENST00000556425.2_1_15:21937379-21938108:-|nuORF;PAK2|p.S330Hfs*6|1|0.39|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;PAK2|p.S371Vfs*67|1|0.31|ENSG00000180370|chr3:196818111-196818111|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;PAK2|p.P185Rfs*14|1|0.2|ENSG00000180370|chr3:196806661-196806661|C/-|frameshift_variant PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27392578125 2 541.285463 1080.55637 0.37016 0.00020036 -1.9791 -0.0010713 -1.609 -0.00087091 541.78629823341 157.6 0.10974 152.81 152.73 152.84 -4.7885 4 2 2 0 0 0 0.65108 1 31340 31340 16.149 1.3108 1 681260 22313 12751 14695 14700 22082 22082 0.01931653466544958 KDPRIWEKDRF 11 Unmodified _KDPRIWEKDRF_ 0 0 0 REV__nc|ENSG00000105341|Q9NW81-2|DMAC2 REV__nc|ENSG00000105341|Q9NW81-2|DMAC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 497.3078308105469 3 497.268525 1488.78375 NaN NaN NaN NaN NaN NaN NaN 131.49 1 126.72 126.22 127.22 -4.7725 0 0 0 0.22632 1 25313 25313 0.03141 0 1 + 22314 23990 14696 14701 22083 22083 0.05890611674522006 KDPRLTDPFR 10 Unmodified _KDPRLTDPFR_ 0 0 0 ENSG00000158321|ENST00000342771|AUTS2;AUTS2|p.H1148Tfs*70|1|0.36|ENSG00000158321|chr7:70790657-70790657|C/-|frameshift_variant ENSG00000158321|ENST00000342771|AUTS2 ENSG00000158321|ENST00000342771|AUTS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7529296875 2 622.840936 1243.66732 NaN NaN NaN NaN NaN NaN NaN 137.37 1 132.53 132.03 133.03 -4.84 0 0 0 0.22588 1 26464 26464 13.042 0.80181 1 22315 282 14697 14702 22084 22084 0.05523293174610444 KDPSDIHFK 9 Unmodified _KDPSDIHFK_ 0 0 0 REV__ENST00000381105.2_1_X:3849682-3849715:-|nuORF REV__ENST00000381105.2_1_X:3849682-3849715:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7796020507812 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 150.18 1 145.06 144.56 145.56 -5.1204 0 0 0 0.19698 1 29103 29103 4.7159 4.4505 1 + 22316 21164 14698 14703 22085 22085 0.01120554954900399 KDQARMGSSSM 11 Unmodified _KDQARMGSSSM_ 0 0 0 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 599.0986938476562 2 599.271172 1196.52779 NaN NaN NaN NaN NaN NaN NaN 165.97 1 161.02 160.52 161.52 -4.9484 0 0 0 0.23429 1 32472 32472 4.897 0.56777 1 22317 2053 14699 14704 22086 22086 -0.06261155496531501 KDQCDYMY 8 Unmodified _KDQCDYMY_ 0 0 0 ENST00000538526.5_3_12:109697932-109704164:+|nuORF ENST00000538526.5_3_12:109697932-109704164:+|nuORF ENST00000538526.5_3_12:109697932-109704164:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27490234375 2 533.204435 1064.39432 NaN NaN NaN NaN NaN NaN NaN 166.33 1 161.39 160.89 161.89 -4.9484 0 0 0 0.21486 1 32581 32581 5.2307 0 1 22318 11049 14700 14705 22087 22087 -0.13530394602253182 KDQDLRHQRS 10 Unmodified _KDQDLRHQRS_ 0 0 0 REV__nc|ENSG00000127191|Q12933-4|TRAF2 REV__nc|ENSG00000127191|Q12933-4|TRAF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 641.9102783203125 2 641.834174 1281.6538 NaN NaN NaN NaN NaN NaN NaN 171.08 1 166.2 165.7 166.7 -4.873 0 0 0 0.22559 1 33890 33890 17.113 5.6182 1 + 22319 15879 14701 14706 22088 22088 0.024234353953943355 KDQMHELFR 9 Unmodified _KDQMHELFR_ 0 0 0 REV__ENSG00000154479|ENST00000447353|CFAP210 REV__ENSG00000154479|ENST00000447353|CFAP210 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2935791015625 2 602.30059 1202.58663 NaN NaN NaN NaN NaN NaN NaN 138.66 1 138.66 138.16 139.16 0 0 0 0 0.23508 1 27539 27539 10.074 3.8681 1 22320 17182 14702 14707 22089 22089 -0.006563111399145782 KDQMHELFR 9 Unmodified _KDQMHELFR_ 0 0 0 REV__ENSG00000154479|ENST00000447353|CFAP210 REV__ENSG00000154479|ENST00000447353|CFAP210 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3018188476562 2 602.30059 1202.58663 NaN NaN NaN NaN NaN NaN NaN 142.08 1 142.08 141.58 142.58 0 0 0 0 0.23508 1 28324 28324 10.074 0 1 22321 17182 14702 14707 22090 22090 -0.006563111399145782 KDQWMKKWWEM 11 Unmodified _KDQWMKKWWEM_ 0 0 0 nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 532.5879516601562 3 532.588102 1594.74248 NaN NaN NaN NaN NaN NaN NaN 168.62 1 163.69 163.19 164.19 -4.9295 0 0 0 0.23698 1 33251 33251 0.40827 0.31342 1 22322 3594 14703 14708 22091 22091 -0.03110608680799487 KDQWRPRKF 9 Unmodified _KDQWRPRKF_ 0 0 0 NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant;ENSG00000144815|ENST00000273347|NXPE3 NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.753662109375 2 630.851638 1259.68872 NaN NaN NaN NaN NaN NaN NaN 166.19 1 161.21 160.71 161.71 -4.9811 0 0 0 0.23508 1 32548 32548 9.3831 0.63772 1 22323 4579 14704 14709 22092 22092 0.0692672299401238 KDRDAHMRRLW 11 Unmodified _KDRDAHMRRLW_ 0 0 0 REV__ENSG00000124143|ENST00000373345|ARHGAP40 REV__ENSG00000124143|ENST00000373345|ARHGAP40 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3901977539062 2 742.388593 1482.76263 NaN NaN NaN NaN NaN NaN NaN 153.22 1 147.95 147.45 148.45 -5.2669 0 0 0 0.2367 1 29699 29699 2.9952 0 1 + 22324 15751 14705 14710 22093 22093 0.0405632309405064 KDRERHRRFTY 11 Unmodified _KDRERHRRFTY_ 0 0 0 ENST00000502998.1_1_4:170601253-170601544:+|nuORF ENST00000502998.1_1_4:170601253-170601544:+|nuORF ENST00000502998.1_1_4:170601253-170601544:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2681274414062 3 521.946557 1562.81784 0.20886 0.00010901 -2.6206 -0.0013678 -2.4118 -0.0012588 521.9448362670073 144.36 0.13522 144.36 144.3 144.44 0 6 3 2 0 0 0 0.66124 1 28841 28841 0.172 0 1 2466300 22325 10638 14706 14711 22094 22094 0.058944528861502477 KDRGDCCWDF 10 Unmodified _KDRGDCCWDF_ 0 0 0 ENST00000470930.5_1_6:131962606-131979536:+|nuORF;ENST00000427707.5_1_6:131962606-131995523:+|nuORF;ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant;ENPP3|p.N789Tfs*54|1|0.21|ENSG00000154269|chr6:131740285-131740285|A/-|frameshift_variant;ENPP3|p.T866Sfs*8|1|0.12|ENSG00000154269|chr6:131746924-131746925|-/GCTT|frameshift_variant;ENSG00000154269|ENST00000357639|ENPP3 ENST00000470930.5_1_6:131962606-131979536:+|nuORF ENST00000470930.5_1_6:131962606-131979536:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7625732421875 2 622.74479 1243.47503 NaN NaN NaN NaN NaN NaN NaN 142.44 1 137.41 136.91 137.91 -5.0261 0 0 0 0.22588 1 27455 27455 3.5965 0 1 22326 949 14707 14712 22095 22095 -0.13697113559351237 KDRGDCCWDF 10 Unmodified _KDRGDCCWDF_ 0 0 0 ENST00000470930.5_1_6:131962606-131979536:+|nuORF;ENST00000427707.5_1_6:131962606-131995523:+|nuORF;ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant;ENPP3|p.N789Tfs*54|1|0.21|ENSG00000154269|chr6:131740285-131740285|A/-|frameshift_variant;ENPP3|p.T866Sfs*8|1|0.12|ENSG00000154269|chr6:131746924-131746925|-/GCTT|frameshift_variant;ENSG00000154269|ENST00000357639|ENPP3 ENST00000470930.5_1_6:131962606-131979536:+|nuORF ENST00000470930.5_1_6:131962606-131979536:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7711181640625 2 622.74479 1243.47503 NaN NaN NaN NaN NaN NaN NaN 148.84 1 143.68 143.18 144.18 -5.1557 0 0 0 0.22588 1 28822 28822 2.9952 0.49676 1 22327 949 14707 14712 22096 22096 -0.13697113559351237 KDRIKKSKKE 10 Unmodified _KDRIKKSKKE_ 0 0 0 REV__nc|ENSG00000085224|P46100-2|ATRX REV__nc|ENSG00000085224|P46100-2|ATRX MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7550659179688 2 630.393336 1258.77212 0.73343 0.00046235 -1.5457 -0.00097439 -0.81225 -0.00051204 630.8938003894933 165.89 0.21342 160.95 160.87 161.08 -4.9484 8 5 2 0 0 0 0.91149 1 32480 32480 4.5289 0 1 7203300 + 22328 14471 14708 14713 22097 22097 0.1530841465123558 KDRKRADRIS 10 Unmodified _KDRKRADRIS_ 0 0 0 REV__SIGLEC8|p.G366Efs*18|1|0.16|ENSG00000105366|chr19:51454735-51454735|C/-|frameshift_variant REV__SIGLEC8|p.G366Efs*18|1|0.16|ENSG00000105366|chr19:51454735-51454735|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7811279296875 2 622.862734 1243.71092 NaN NaN NaN NaN NaN NaN NaN 159.56 1 154.29 153.79 154.79 -5.2748 0 0 0 0.22588 1 30971 30971 8.7454 1.1365 1 + 22329 14982 14709 14714 22098 22098 0.09880902671784497 KDRKRKKK 8 Unmodified _KDRKRKKK_ 0 0 0 REV__CHD7-TCF7L2|9|fusion REV__CHD7-TCF7L2|9|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7737426757812 2 543.864549 1085.71454 NaN NaN NaN NaN NaN NaN NaN 160.24 1 160.24 159.74 160.74 0 0 0 0 0.21486 1 32174 32174 4.3292 0 1 + 22330 13403 14710 14715 22099 22099 0.17511617236323218 KDRKRKKK 8 Unmodified _KDRKRKKK_ 0 0 0 REV__CHD7-TCF7L2|9|fusion REV__CHD7-TCF7L2|9|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7728271484375 2 543.864549 1085.71454 NaN NaN NaN NaN NaN NaN NaN 170.71 1 165.79 165.29 166.29 -4.9149 0 0 0 0.21486 1 33765 33765 4.756 0 1 + 22331 13403 14710 14715 22100 22100 0.17511617236323218 KDRLKLVAKK 10 Unmodified _KDRLKLVAKK_ 0 0 0 REV__ENSG00000254737|ENST00000641722|OR10G4 REV__ENSG00000254737|ENST00000641722|OR10G4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 400.27099609375 3 400.271319 1197.79213 NaN NaN NaN NaN NaN NaN NaN 142.67 1 142.67 142.17 143.17 0 0 0 0 0.22588 1 28450 28450 0.62683 0.4675 1 + 22332 19768 14711 14716 22101 22101 0.20114210381802877 KDRQEKPASR 10 Unmodified _KDRQEKPASR_ 0 0 0 REV__ENSG00000155827|ENST00000389120|RNF20 REV__ENSG00000155827|ENST00000389120|RNF20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 607.8486938476562 2 607.833643 1213.65273 NaN NaN NaN NaN NaN NaN NaN 141.99 1 141.99 141.49 142.49 0 0 0 0 0.22588 1 28306 28306 7.609 1.8771 1 + 22333 17227 14712 14717 22102 22102 0.054452210265026224 KDRRKKVI 8 Unmodified _KDRRKKVI_ 0 0 0 ENSG00000165660|ENST00000298492|ABRAXAS2 ENSG00000165660|ENST00000298492|ABRAXAS2 ENSG00000165660|ENST00000298492|ABRAXAS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.263916015625 2 521.845825 1041.6771 -0.10417 -5.4358E-05 2.7953 0.0014587 2.6911 0.0014044 522.3502800411126 152.3 0.10777 147.55 147.5 147.6 -4.7523 4 2 2 0 0 0 0.89926 1 30270 30270 1.3295 1.3295 1 874160 22334 5648 14713 14718 22103 22103 0.15792525970687166 KDRRLDHDQDW 11 Unmodified _KDRRLDHDQDW_ 0 0 0 REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4 REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3728637695312 2 742.355471 1482.69639 NaN NaN NaN NaN NaN NaN NaN 172.02 1 167.12 166.62 167.62 -4.8977 0 0 0 0.23698 1 34102 34102 2.4985 1.0166 1 + 22335 17969 14714 14719 22104 22104 -0.025652142670196554 KDRSPTVIYT 10 Unmodified _KDRSPTVIYT_ 0 0 0 REV__ENSG00000176624|ENST00000406189|MEX3C REV__ENSG00000176624|ENST00000406189|MEX3C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2601928710938 2 590.322045 1178.62954 NaN NaN NaN NaN NaN NaN NaN 156.16 1 150.91 150.41 151.41 -5.2526 0 0 0 0.22588 1 30282 30282 8.7454 1.4562 1 + 22336 18515 14715 14720 22105 22105 0.04736782189183941 KDRYITLDK 9 Unmodified _KDRYITLDK_ 0 0 0 ENSG00000205832|ENST00000444310|C16orf96 ENSG00000205832|ENST00000444310|C16orf96 ENSG00000205832|ENST00000444310|C16orf96 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.32177734375 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 138.56 1 133.72 133.22 134.22 -4.8429 0 0 0 0.23508 1 26704 26704 6.7232 0 1 22337 7658 14716 14721 22106 22106 0.06533086051786086 KDRYPRKRFV 10 Unmodified _KDRYPRKRFV_ 0 0 0 ENST00000477972.1_1_7:89976055-89982324:+|nuORF;nc|ENSG00000105793|A4D1E9-3|GTPBP10;nc|ENSG00000105793|A4D1E9-2|GTPBP10;ENSG00000105793|ENST00000222511|GTPBP10 ENST00000477972.1_1_7:89976055-89982324:+|nuORF ENST00000477972.1_1_7:89976055-89982324:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 682.8971557617188 2 682.89912 1363.78369 NaN NaN NaN NaN NaN NaN NaN 166.65 1 161.67 161.17 162.17 -4.9811 0 0 0 0.22588 1 32692 32692 6.2058 0 1 22338 2343 14717 14722 22107 22107 0.1163465646518489 KDSDEGRR 8 Unmodified _KDSDEGRR_ 0 0 0 DNAI1|p.S258Ifs*17|1|0.34|ENSG00000122735|chr9:34493277-34493278|-/A|frameshift_variant;ENSG00000122735|ENST00000242317|DNAI1 DNAI1|p.S258Ifs*17|1|0.34|ENSG00000122735|chr9:34493277-34493278|-/A|frameshift_variant DNAI1|p.S258Ifs*17|1|0.34|ENSG00000122735|chr9:34493277-34493278|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78289794921875 2 481.736137 961.457721 NaN NaN NaN NaN NaN NaN NaN 108.58 1 104.26 103.76 104.76 -4.32 0 0 0 0.21171 1 21396 21396 15.847 1.2655 1 22339 869 14718 14723 22108 22108 -0.02454949778473292 KDSEDSLY 8 Unmodified _KDSEDSLY_ 0 0 0 ENST00000513085.1_1_5:95728707-95748688:-|nuORF;nc|ENSG00000175426|P29120-2|PCSK1;PCSK1|p.Y729Ifs*21|2|0.31|ENSG00000175426|chr5:96393078-96393078|A/-|frameshift_variant;ENSG00000175426|ENST00000311106|PCSK1 ENST00000513085.1_1_5:95728707-95748688:-|nuORF ENST00000513085.1_1_5:95728707-95748688:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72216796875 2 478.714005 955.413456 NaN NaN NaN NaN NaN NaN NaN 64.489 1 64.489 63.989 64.989 0 0 0 0 0.19753 1 12415 12415 25.399 0.72543 1 22340 6409 14719 14724 22109 22109 -0.06603398715333242 KDSKRKKAKK 10 Unmodified _KDSKRKKAKK_ 0 0 0 REV__ENSG00000087152|ENST00000587097|ATXN7L3 REV__ENSG00000087152|ENST00000587097|ATXN7L3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 608.86767578125 2 608.896046 1215.77754 NaN NaN NaN NaN NaN NaN NaN 166.21 1 166.21 165.71 166.71 0 0 0 0 0.22588 1 33824 33824 2.7352 0 1 + 22341 14495 14720 14725 22110 22110 0.17828138233676327 KDSLDISLR 9 Unmodified _KDSLDISLR_ 0 0 0 REV__ENSG00000137766|ENST00000260323|UNC13C REV__ENSG00000137766|ENST00000260323|UNC13C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6782836914062 2 523.795663 1045.57677 NaN NaN NaN NaN NaN NaN NaN 145.6 1 145.6 145.1 146.1 0 0 0 0 0.23508 1 29100 29100 12.241 0.60036 1 + 22342 16407 14721 14726 22111 22111 0.055808241263775926 KDSMFFQWAAE 11 Unmodified _KDSMFFQWAAE_ 0 0 0 REV__ENSG00000130561|ENST00000409110|SAG REV__ENSG00000130561|ENST00000409110|SAG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7683410644531 3 453.872784 1358.59652 0.19282 8.7514E-05 -4.3782 -0.0019871 -4.1854 -0.0018996 453.86939954543317 136.86 0.10396 132.02 131.93 132.04 -4.84 4 2 2 0 0 0 0.9614 1 26348 26348 0.84494 0 1 544970 + 22343 16016 14722 14727 22112 22112 -0.06843167925126181 KDSRKLKKL 9 Unmodified _KDSRKLKKL_ 0 0 0 ENST00000482232.1_1_7:74167428-74167473:+|nuORF ENST00000482232.1_1_7:74167428-74167473:+|nuORF ENST00000482232.1_1_7:74167428-74167473:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 558.4716796875 2 558.36659 1114.71863 NaN NaN NaN NaN NaN NaN NaN 167.51 1 162.72 162.22 163.22 -4.7898 0 0 0 0.23508 1 33790 33790 4.3292 0 1 22344 10391 14723 14728 22113 22113 0.16585661939370766 KDSRRQCMK 9 Unmodified _KDSRRQCMK_ 0 0 0 REV__MYOZ2|p.R61C|1|0.25|ENSG00000172399|chr4:119150976-119150976|C/T|missense_variant REV__MYOZ2|p.R61C|1|0.25|ENSG00000172399|chr4:119150976-119150976|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3250122070312 2 576.292242 1150.56993 NaN NaN NaN NaN NaN NaN NaN 125.71 1 125.71 125.21 126.21 0 0 0 0 0.23508 1 24796 24796 10.824 1.4408 1 + 22345 23906 14724 14729 22114 22114 0.0006686470251224819 KDSSTLRRASS 11 Unmodified _KDSSTLRRASS_ 0 0 0 ENSG00000137460|ENST00000511601|FHDC1 ENSG00000137460|ENST00000511601|FHDC1 ENSG00000137460|ENST00000511601|FHDC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 604.323486328125 2 604.323108 1206.63166 NaN NaN NaN NaN NaN NaN NaN 167.52 1 167.52 167.02 168.02 0 0 0 0 0.21513 1 34236 34236 15.248 0 1 22346 4084 14725 14730 22115 22115 0.03661210927020875 KDSTCSCAWIF 11 Unmodified _KDSTCSCAWIF_ 0 0 0 L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|44|1|anti-sense L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|44|1|anti-sense L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|44|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7725830078125 2 630.773016 1259.53148 NaN NaN NaN NaN NaN NaN NaN 145.88 1 141.19 140.69 141.69 -4.6868 0 0 0 0.23018 1 28923 28923 8.1555 2.4237 1 22347 12023 14726 14731 22116 22116 -0.08790485722670383 KDSTRAEK 8 Unmodified _KDSTRAEK_ 0 0 0 REV__RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant REV__RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 312.1521301269531 3 312.169929 933.487959 NaN NaN NaN NaN NaN NaN NaN 90.908 1 86.814 86.314 87.314 -4.0946 0 0 0 0.21486 1 17321 17321 1.4819 0 1 + 22348 15683 14727 14732 22117 22117 0.018554088867063 KDSWYCSRIC 10 Unmodified _KDSWYCSRIC_ 0 0 0 ENSG00000179148|ENST00000448843|ALOXE3;nc|ENSG00000179148|Q9BYJ1-2|ALOXE3 ENSG00000179148|ENST00000448843|ALOXE3 ENSG00000179148|ENST00000448843|ALOXE3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7767944335938 2 630.778633 1259.54271 NaN NaN NaN NaN NaN NaN NaN 153.43 1 148.17 147.67 148.67 -5.2669 0 0 0 0.22588 1 29739 29739 6.7232 2.3939 1 22349 6615 14728 14733 22118 22118 -0.07667663628535593 KDSYKFDY 8 Unmodified _KDSYKFDY_ 0 0 0 REV__tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1 REV__tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2609252929688 2 533.248015 1064.48148 0.36157 0.0001928 2.9402 0.0015678 3.3017 0.0017606 533.2499778269186 145.16 0.17053 140.21 140.1 140.27 -4.9445 5 3 2 0 0 0 0.73426 1 28071 28071 9.3474 0 1 836560 + 22350 24909 14729 14734 22119 22119 -0.0481852906466429 KDTDALMIY 9 Unmodified _KDTDALMIY_ 0 0 0 REV__DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant REV__DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.0728454589844 3 357.179326 1068.51615 -0.19992 -7.1406E-05 1.0484 0.00037447 0.84849 0.00030306 357.1795627364328 31.649 0.4585 29.5 29.3 29.759 -2.1483 24 12 3 0 0 0 0.8799 1 5498 5498 0.20686 0 1 699740 + 22351 13682 14730 14735 22120 22120 -0.015370292482202785 KDTEDVPM 8 Unmodified _KDTEDVPM_ 0 0 0 ENST00000494982.1_1_1:112233982-112249293:+|nuORF;ENSG00000116473|ENST00000369709|RAP1A ENST00000494982.1_1_1:112233982-112249293:+|nuORF ENST00000494982.1_1_1:112233982-112249293:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.13494873046875 3 312.144392 933.411348 NaN NaN NaN NaN NaN NaN NaN 87.509 1 87.509 87.009 88.009 0 0 0 0 0.21486 1 17085 17085 3.5965 1.6901 1 22352 2927 14731 14736 22121 22121 -0.058021507247758564 KDTMDNWDEKK 11 Unmodified _KDTMDNWDEKK_ 0 0 0 ENST00000468120.5_1_2:187351750-187368784:+|nuORF;ENSG00000065548|ENST00000337859|ZC3H15 ENST00000468120.5_1_2:187351750-187368784:+|nuORF ENST00000468120.5_1_2:187351750-187368784:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 705.3455810546875 2 705.321916 1408.62928 NaN NaN NaN NaN NaN NaN NaN 168.87 1 164.08 163.58 164.58 -4.7898 0 0 0 0.2321 1 34165 34165 6.6304 0.42459 1 22353 1357 14732 14737 22122 22122 -0.058690055929901064 KDTPRNRLS 9 Unmodified _KDTPRNRLS_ 0 0 0 ENSG00000178177|ENST00000635767|LCORL ENSG00000178177|ENST00000635767|LCORL ENSG00000178177|ENST00000635767|LCORL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7876586914062 2 543.804354 1085.59415 NaN NaN NaN NaN NaN NaN NaN 156.11 1 150.83 150.33 151.33 -5.2854 0 0 0 0.21844 1 30283 30283 18.146 4.6385 1 22354 6563 14733 14738 22123 22123 0.054781644520289774 KDTSPWAELTL 11 Unmodified _KDTSPWAELTL_ 0 0 0 REV__nc|ENSG00000125363|Q99217-2|AMELX REV__nc|ENSG00000125363|Q99217-2|AMELX MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7521362304688 2 630.82716 1259.63977 NaN NaN NaN NaN NaN NaN NaN 136.91 1 132.27 131.77 132.77 -4.6413 0 0 0 0.23087 1 27015 27015 7.609 0.88579 1 + 22355 15810 14734 14739 22124 22124 0.020333451237547706 KDTSQLRFS 9 Unmodified _KDTSQLRFS_ 0 0 0 ENST00000580273.1_1_17:73282404-73285559:-|nuORF;SLC25A19|p.G74Vfs*17|1|0.08|ENSG00000125454|chr17:75286371-75286371|C/-|frameshift_variant ENST00000580273.1_1_17:73282404-73285559:-|nuORF ENST00000580273.1_1_17:73282404-73285559:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2828369140625 2 541.285463 1080.55637 0.19942 0.00010794 -2.2861 -0.0012374 -2.0867 -0.0011295 541.7864630959176 151.89 1.277 146.66 145.97 147.25 -5.2365 41 35 2 0 0 0 0.42844 1 29461 29461 24.021 4.7636 1 6911800 22356 11493 14735 14740 22125 22125 0.019316534665676954 KDTTINDL 8 Unmodified _KDTTINDL_ 0 0 0 REV__nc|ENSG00000274391|P56180-4|TPTE REV__nc|ENSG00000274391|P56180-4|TPTE MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2381591796875 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 106.62 1 102.35 101.85 102.85 -4.2638 0 0 0 0.21039 1 20987 20987 16.942 2.104 1 + 22357 19927 14736 14741 22126 22126 0.003331844182639543 KDVAVCSDSY 10 Unmodified _KDVAVCSDSY_ 0 0 0 REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7734375 2 543.742239 1085.46993 NaN NaN NaN NaN NaN NaN NaN 143.52 1 138.49 137.99 138.99 -5.0261 0 0 0 0.22588 1 27668 27668 9.3831 0.035688 1 + 22358 25026 14737 14742 22127 22127 -0.06939094150311576 KDVCEAMEY 9 Unmodified _KDVCEAMEY_ 0 0 0 ENST00000478995.1_1_X:100611030-100611776:-|nuORF;BTK|p.A638Efs*11|1|0.06|ENSG00000010671|chrX:101349952-101349952|G/-|frameshift_variant;ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK ENST00000478995.1_1_X:100611030-100611776:-|nuORF ENST00000478995.1_1_X:100611030-100611776:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7711791992188 2 544.225368 1086.43618 0.48503 0.00026396 -0.71216 -0.00038758 -0.22714 -0.00012361 544.7264489729243 155.52 0.14355 150.27 150.18 150.33 -5.2526 5 3 2 0 0 0 0.85111 1 30144 30144 6.7232 1.9672 1 1039100 22359 344 14738 14743 22128 22128 -0.10357838913705564 KDVDVHHLD 9 Unmodified _KDVDVHHLD_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.202392578125 3 359.848967 1076.52507 0.34695 0.00012485 -0.48779 -0.00017553 -0.14084 -5.068E-05 359.84880696948863 29.953 0.49124 28.06 27.752 28.243 -1.8928 23 13 2 0 0 0 0.84094 1 5059 5059 9.544 3.3521 1 993490 + 22360 17221 14739 14744 22129 22129 -0.010129195675290248 KDVDVHHLD 9 Unmodified _KDVDVHHLD_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 359.848967 1076.52507 -0.19452 -6.9998E-05 0.26588 9.5678E-05 0.071364 2.568E-05 359.84910028563996 27.987 0.44683 27.987 27.7 28.147 0 0.0065382 0.00031632 NaN 9.544 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 937530 + 22361 17221 14739 14744 -0.010129195675290248 KDVDVHHLD 9 Unmodified _KDVDVHHLD_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.848967 1076.52507 0.2708 9.7446E-05 -0.20714 -7.4538E-05 0.06366 2.2908E-05 359.84890102378233 30.032 0.59007 27.915 27.599 28.189 -2.1167 -0.065452 -0.00019433 NaN 9.544 33 16 3 NaN NaN NaN NaN 0 NaN NaN 0 773340 + 22362 17221 14739 14744 -0.010129195675290248 KDVDVHHLD 9 Unmodified _KDVDVHHLD_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 359.848967 1076.52507 -0.13373 -4.8123E-05 0.17205 6.1913E-05 0.038322 1.379E-05 359.8490137033113 30.034 0.52496 27.96 27.658 28.183 -2.0743 -0.020789 0.00021502 NaN 9.544 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 747190 + 22363 17221 14739 14744 -0.010129195675290248 KDVEKKKKRTR 11 Unmodified _KDVEKKKKRTR_ 0 0 0 RASAL2|p.K241Rfs*7|2|0.32|ENSG00000075391|chr1:178442906-178442906|A/-|frameshift_variant RASAL2|p.K241Rfs*7|2|0.32|ENSG00000075391|chr1:178442906-178442906|A/-|frameshift_variant RASAL2|p.K241Rfs*7|2|0.32|ENSG00000075391|chr1:178442906-178442906|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 708.3126220703125 2 708.443892 1414.87323 NaN NaN NaN NaN NaN NaN NaN 166.9 1 166.9 166.4 167.4 0 0 0 0 0.23476 1 34059 34059 4.5289 0 1 22364 12865 14740 14745 22130 22130 0.18238866353908634 KDVFYETY 8 Unmodified _KDVFYETY_ 0 0 0 REV__tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1 REV__tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2793579101562 2 532.75039 1063.48623 0.36338 0.00019359 0.25655 0.00013667 0.61993 0.00033027 532.7508703590778 23.888 0.30856 22.354 22.126 22.434 -1.5342 25 8 4 0 0 0 0.97966 1 3870 3870 7.2892 5.445 1 1444500 + 22365 24972 14741 14746 22131 22131 -0.042976449218940616 KDVGVILKKVG 11 Unmodified _KDVGVILKKVG_ 0 0 0 REV__ENST00000420064.1_1_3:193296708-193296948:-|nuORF REV__ENST00000420064.1_1_3:193296708-193296948:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 577.948486328125 2 578.376623 1154.73869 NaN NaN NaN NaN NaN NaN NaN 167.35 1 162.46 161.96 162.96 -4.8916 0 0 0 0.23429 1 32901 32901 4.897 0.36815 1 + 22366 21501 14742 14747 22132 22132 0.16751412879307281 KDVKAAFKKLI 11 Unmodified _KDVKAAFKKLI_ 0 0 0 ENSG00000172459|ENST00000624596|OR5AR1 ENSG00000172459|ENST00000624596|OR5AR1 ENSG00000172459|ENST00000624596|OR5AR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.74951171875 2 630.905548 1259.79654 NaN NaN NaN NaN NaN NaN NaN 174.28 1 169.49 168.99 169.99 -4.7898 0 0 0 0.23519 1 35597 35597 4.1895 0.59301 1 22367 6223 14743 14748 22133 22133 0.17703674804738512 KDVKEDDI 8 Unmodified _KDVKEDDI_ 0 0 0 tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24505615234375 2 481.245472 960.476391 0.19881 9.5676E-05 -0.36213 -0.00017427 -0.16332 -7.8598E-05 481.2452666262255 99.809 1.515 95.819 95.377 96.892 -3.9895 145 43 5 0 0 0 8448 1 19096 19096 4.2837 0 1 182930000 22368 26403 14744 14749 22134 22134 -0.0054283292729451205 KDVKHMNSAG 10 Unmodified _KDVKHMNSAG_ 0 0 0 nc|ENSG00000162813|O95861-3|BPNT1;nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1 nc|ENSG00000162813|O95861-3|BPNT1 nc|ENSG00000162813|O95861-3|BPNT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7898559570312 2 543.771665 1085.52878 NaN NaN NaN NaN NaN NaN NaN 170.64 1 165.72 165.22 166.22 -4.9149 0 0 0 0.22588 1 33748 33748 12.241 3.4953 1 22369 5372 14745 14750 22135 22135 -0.010565730653070204 KDVKKQTPHV 10 Unmodified _KDVKKQTPHV_ 0 0 0 REV__tr|U7STW2|U7STW2_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01213PE=3SV=1 REV__tr|U7STW2|U7STW2_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01213PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2762451171875 2 590.345855 1178.67716 NaN NaN NaN NaN NaN NaN NaN 130.16 1 125.39 124.89 125.89 -4.7725 0 0 0 0.22588 1 25046 25046 6.2058 0.47393 1 + 22370 25124 14746 14751 22136 22136 0.09496481180030969 KDVKYLKEE 9 Unmodified _KDVKYLKEE_ 0 0 0 CADM2|p.L281Pfs*5|1|0.15|ENSG00000175161|chr3:85961546-85961549|TAAA/-|frameshift_variant;ENSG00000175161|ENST00000383699|CADM2;nc|ENSG00000175161|Q8N3J6|CADM2;nc|ENSG00000175161|Q8N3J6-3|CADM2;nc|ENSG00000175161|Q8N3J6-4|CADM2;nc|ENSG00000175161|Q8N3J6-5|CADM2 CADM2|p.L281Pfs*5|1|0.15|ENSG00000175161|chr3:85961546-85961549|TAAA/-|frameshift_variant CADM2|p.L281Pfs*5|1|0.15|ENSG00000175161|chr3:85961546-85961549|TAAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3186645507812 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 150.58 1 145.85 145.35 146.35 -4.7323 0 0 0 0.23508 1 29909 29909 13.042 2.9685 1 22371 366 14747 14752 22137 22137 0.05410263957674033 KDVLRIILE 9 Unmodified _KDVLRIILE_ 0 0 0 REV__tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1 REV__tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 549.8453979492188 2 549.847699 1097.68084 0.22036 0.00012117 -3.6908 -0.0020294 -3.4705 -0.0019082 549.8463930512842 172.42 0.13896 167.52 167.43 167.57 -4.8977 5 3 2 0 0 0 0.75112 1 34201 34201 3.9444 0 1 2847800 + 22372 25438 14748 14753 22138 22138 0.1359115095388006 KDVNRRRKRKK 11 Unmodified _KDVNRRRKRKK_ 0 0 0 REV__nc|ENSG00000080503|P51531-2|SMARCA2 REV__nc|ENSG00000080503|P51531-2|SMARCA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3980712890625 2 742.473849 1482.93315 NaN NaN NaN NaN NaN NaN NaN 174.44 1 174.44 173.94 174.94 0 0 0 0 0.23698 1 36108 36108 1.0715 0.76443 1 + 22373 14409 14749 14754 22139 22139 0.21099601807804902 KDVNRRRKRKK 11 Unmodified _KDVNRRRKRKK_ 0 0 0 REV__nc|ENSG00000080503|P51531-2|SMARCA2 REV__nc|ENSG00000080503|P51531-2|SMARCA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3941650390625 2 742.473849 1482.93315 NaN NaN NaN NaN NaN NaN NaN 174.79 1 169.9 169.4 170.4 -4.8845 0 0 0 0.23698 1 34733 34733 1.0715 0.72083 1 + 22374 14409 14749 14754 22140 22140 0.21099601807804902 KDVQQVLLD 9 Unmodified _KDVQQVLLD_ 0 0 0 REV__nc|ENSG00000106086|Q96JA3-3|PLEKHA8 REV__nc|ENSG00000106086|Q96JA3-3|PLEKHA8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 529.8128662109375 2 529.298039 1056.58152 0.38056 0.00020143 -0.98047 -0.00051896 -0.59991 -0.00031753 529.7995501629947 147.57 0.14055 142.51 142.42 142.56 -5.0595 5 3 2 0 0 0 0.58804 1 28579 28579 13.906 0.86358 1 1691700 + 22375 15032 14750 14755 22141 22141 0.055497082691545074 KDVSEYFYE 9 Unmodified _KDVSEYFYE_ 0 0 0 CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350 CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2479248046875 2 590.263862 1178.51317 NaN NaN NaN NaN NaN NaN NaN 149.49 1 149.49 148.99 149.99 0 0 0 0 0.23508 1 29927 29927 6.2058 0.47393 1 22376 495 14751 14756 22142 22142 -0.06894581101369113 KDVVSATVYI 10 Unmodified _KDVVSATVYI_ 0 0 0 tr|U7SJI1|U7SJI1_FUSNUTdcFproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02153PE=3SV=1 tr|U7SJI1|U7SJI1_FUSNUTdcFproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02153PE=3SV=1 tr|U7SJI1|U7SJI1_FUSNUTdcFproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02153PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7830810546875 2 547.808239 1093.60193 0.41316 0.00022633 -3.9191 -0.0021469 -3.506 -0.0019206 548.3085045824631 148.51 0.20303 143.45 143.37 143.57 -5.0595 8 5 2 0 0 0 0.67319 1 28760 28760 13.906 3.0821 1 1449300 22377 25943 14752 14757 22143 22143 0.058868789289590495 KDWIIFLYY 9 Unmodified _KDWIIFLYY_ 0 0 0 REV__SLC7A11|p.A463V|1|0.34|ENSG00000151012|chr4:138179273-138179273|G/A|missense_variant REV__SLC7A11|p.A463V|1|0.34|ENSG00000151012|chr4:138179273-138179273|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.748779296875 2 630.8368 1259.65905 NaN NaN NaN NaN NaN NaN NaN 125.3 1 125.3 124.8 125.8 0 0 0 0 0.23508 1 24712 24712 7.9102 0.62092 1 + 22378 17050 14753 14758 22144 22144 0.03960346205349197 KDWMQKKR 8 Unmodified _KDWMQKKR_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1;OSGIN1|p.T288Pfs*18|1|0.47|ENSG00000140961|chr16:83965181-83965181|G/-|frameshift_variant ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 374.3093566894531 3 373.874571 1118.60188 -0.46645 -0.00017439 -1.2964 -0.0004847 -1.7629 -0.00065909 373.8741762000023 37.598 0.27729 35.261 35.12 35.398 -2.3375 12 7 2 0 0 0 1.027 1 6646 6646 0.30703 0 1 235710 22379 4335 14754 14759 22145 22145 0.04732600447960067 KDWTKKKPIVV 11 Unmodified _KDWTKKKPIVV_ 0 0 0 REV__ENSG00000132300|ENST00000254630|PTCD3 REV__ENSG00000132300|ENST00000254630|PTCD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 670.9671630859375 2 671.41628 1340.81801 NaN NaN NaN NaN NaN NaN NaN 172.4 1 167.52 167.02 168.02 -4.881 0 0 0 0.23429 1 34220 34220 4.897 0 1 + 22380 16103 14755 14760 22146 22146 0.1612305983344413 KDWTQRKDFIF 11 Unmodified _KDWTQRKDFIF_ 0 0 0 INPPL1|p.R387W|1|0.07|ENSG00000165458|chr11:72230430-72230430|C/T|missense_variant INPPL1|p.R387W|1|0.07|ENSG00000165458|chr11:72230430-72230430|C/T|missense_variant INPPL1|p.R387W|1|0.07|ENSG00000165458|chr11:72230430-72230430|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3873291015625 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 133.51 1 128.64 128.14 129.14 -4.8726 0 0 0 0.23698 1 25652 25652 2.4985 1.169 1 22381 11947 14756 14761 22147 22147 0.03987806925965742 KDWYYAQL 8 Unmodified _KDWYYAQL_ 0 0 0 ENSG00000134982|ENST00000257430|APC;APC|p.E1353Nfs*62|1|0.5|ENSG00000134982|chr5:112839649-112839649|T/-|frameshift_variant;APC|p.L1488Ffs*17|1|0.27|ENSG00000134982|chr5:112840057-112840063|TATTACA/-|frameshift_variant;APC|p.Q1429Dfs*45|1|0.42|ENSG00000134982|chr5:112839875-112839876|-/GG|frameshift_variant;APC|p.S1465Rfs*9|3|0.3|ENSG00000134982|chr5:112839978-112839979|-/AG|frameshift_variant;APC|p.K1454Lfs*20|1|0.81|ENSG00000134982|chr5:112839952-112839953|-/TT|frameshift_variant;APC|p.S1436Rfs*38|1|0.42|ENSG00000134982|chr5:112839899-112839900|-/AG|frameshift_variant;APC|p.S1436Vfs*37|1|0.37|ENSG00000134982|chr5:112839899-112839899|A/-|frameshift_variant;APC|p.S1421Vfs*52|1|0.51|ENSG00000134982|chr5:112839855-112839855|A/-|frameshift_variant;APC|p.S1421Mfs*52|1|0.67|ENSG00000134982|chr5:112839856-112839856|G/-|frameshift_variant;APC|p.R1435Efs*38|1|0.41|ENSG00000134982|chr5:112839897-112839897|A/-|frameshift_variant;APC|p.N1455Ifs*18|1|0.15|ENSG00000134982|chr5:112839954-112839954|A/-|frameshift_variant;APC|p.P1453Lfs*20|2|0.29|ENSG00000134982|chr5:112839951-112839951|C/-|frameshift_variant;APC|p.A1446Vfs*27|1|0.38|ENSG00000134982|chr5:112839931-112839931|C/-|frameshift_variant;APC|p.M1431Cfs*42|1|0.4|ENSG00000134982|chr5:112839883-112839883|C/-|frameshift_variant;APC|p.P1439Lfs*34|4|0.34|ENSG00000134982|chr5:112839909-112839909|C/-|frameshift_variant;APC|p.P1442Lfs*31|1|0.41|ENSG00000134982|chr5:112839918-112839918|C/-|frameshift_variant;APC|p.E1464Vfs*8|2|0.27|ENSG00000134982|chr5:112839979-112839982|AGAG/-|frameshift_variant;APC|p.Q1447Sfs*24|1|0.77|ENSG00000134982|chr5:112839931-112839937|CTCAAAC/-|frameshift_variant;APC|p.R1435Lfs*31|1|0.38|ENSG00000134982|chr5:112839896-112839917|CAGAAGTAAAACACCTCCACCA/-|frameshift_variant;APC|p.I1417Hfs*6|1|0.53|ENSG00000134982|chr5:112839839-112839840|-/G|frameshift_variant;APC|p.S1419*|1|0.33|ENSG00000134982|chr5:112839844-112839845|-/TA|frameshift_variant;APC|p.V1414Efs*5|1|0.58|ENSG00000134982|chr5:112839835-112839835|T/-|frameshift_variant;APC|p.S1355Ffs*62|1|0.37|ENSG00000134982|chr5:112839653-112839654|-/TTTTT|frameshift_variant;APC|p.S1403Mfs*13|1|0.05|ENSG00000134982|chr5:112839799-112839818|CCAGCTCCGTTCAGAGTGAA/-|frameshift_variant;APC|p.S1407Vfs*8|1|0.39|ENSG00000134982|chr5:112839812-112839812|G/-|frameshift_variant;APC|p.S1398Ifs*17|1|0.86|ENSG00000134982|chr5:112839787-112839787|G/-|frameshift_variant;APC|p.I1401Mfs*14|1|0.73|ENSG00000134982|chr5:112839796-112839796|T/-|frameshift_variant;APC|p.S1355Lfs*60|2|0.6|ENSG00000134982|chr5:112839654-112839654|T/-|frameshift_variant;APC|p.T1487Yfs*18|1|0.1|ENSG00000134982|chr5:112840051-112840057|ATACTTT/-|frameshift_variant;APC|p.D1486Ifs*21|2|0.76|ENSG00000134982|chr5:112840049-112840049|T/-|frameshift_variant;APC|p.A1492Pfs*15|1|0.69|ENSG00000134982|chr5:112840068-112840068|G/-|frameshift_variant;APC|p.N1531Rfs*31|1|0.18|ENSG00000134982|chr5:112840186-112840195|ATGACAATGG/-|frameshift_variant;nc|ENSG00000134982|P25054-3|APC;nc|ENSG00000134982|P25054-2|APC;APC|p.E1576Kfs*74|1|0.61|ENSG00000134982|chr5:112840319-112840319|A/-|frameshift_variant;APC|p.S1581Lfs*69|1|0.34|ENSG00000134982|chr5:112840333-112840333|T/-|frameshift_variant;APC|p.I1580Lfs*69|1|0.59|ENSG00000134982|chr5:112840330-112840333|TTAT/-|frameshift_variant;APC|p.C1578Mfs*13|1|0.68|ENSG00000134982|chr5:112840323-112840324|-/A|frameshift_variant;APC|p.I1580Nfs*11|1|0.36|ENSG00000134982|chr5:112840331-112840332|-/A|frameshift_variant;APC|p.I1574Yfs*2|1|0.36|ENSG00000134982|chr5:112840312-112840312|A/-|frameshift_variant;APC|p.N1535Mfs*30|1|0.28|ENSG00000134982|chr5:112840194-112840194|G/-|frameshift_variant;APC|p.E1544Nfs*21|1|0.05|ENSG00000134982|chr5:112840220-112840220|T/-|frameshift_variant;APC|p.T1556Lfs*9|1|0.61|ENSG00000134982|chr5:112840255-112840255|A/-|frameshift_variant;APC|p.E1552Qfs*12|1|0.31|ENSG00000134982|chr5:112840247-112840250|AGAG/-|frameshift_variant;APC|p.T1556Nfs*3|11|0.46|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;APC|p.L1488Yfs*19|2|0.41|ENSG00000134982|chr5:112840055-112840055|T/-|frameshift_variant;APC|p.I1557*|1|0.43|ENSG00000134982|chr5:112840262-112840263|TA/-|frameshift_variant;APC|p.H1490Nfs*25|1|0.21|ENSG00000134982|chr5:112840059-112840060|-/TAAA|frameshift_variant;APC|p.T1496Kfs*19|1|0.17|ENSG00000134982|chr5:112840075-112840076|-/AAGT|frameshift_variant;APC|p.S1501Ffs*13|1|0.5|ENSG00000134982|chr5:112840091-112840092|-/T|frameshift_variant;APC|p.H1490Tfs*24|1|0.23|ENSG00000134982|chr5:112840060-112840061|-/A|frameshift_variant;APC|p.A1492Cfs*22|2|0.29|ENSG00000134982|chr5:112840063-112840064|-/T|frameshift_variant;APC|p.L1489Kfs*19|1|0.34|ENSG00000134982|chr5:112840058-112840074|ATTACATTTTGCCACGG/-|frameshift_variant;APC|p.H1490Yfs*18|1|0.48|ENSG00000134982|chr5:112840059-112840060|-/TA|frameshift_variant;APC|p.L1489Yfs*18|3|0.26|ENSG00000134982|chr5:112840059-112840059|T/-|frameshift_variant;APC|p.F1491Lfs*16|1|0.27|ENSG00000134982|chr5:112840064-112840064|T/-|frameshift_variant;APC|p.E1494Kfs*13|1|0.84|ENSG00000134982|chr5:112840073-112840073|G/-|frameshift_variant;APC|p.T1493Rfs*14|2|0.34|ENSG00000134982|chr5:112840069-112840069|C/-|frameshift_variant;APC|p.E1397Gfs*18|1|0.76|ENSG00000134982|chr5:112839784-112839784|A/-|frameshift_variant;APC|p.S1411Rfs*4|1|0.42|ENSG00000134982|chr5:112839827-112839827|T/-|frameshift_variant;APC|p.S1400*|1|0.45|ENSG00000134982|chr5:112839793-112839793|C/-|frameshift_variant;APC|p.V1390Ffs*6|1|0.39|ENSG00000134982|chr5:112839757-112839758|-/TTCT|frameshift_variant;APC|p.C1387*|1|0.31|ENSG00000134982|chr5:112839749-112839750|-/AGAT|frameshift_variant;APC|p.M1383Ifs*3|1|0.64|ENSG00000134982|chr5:112839741-112839742|-/T|frameshift_variant;APC|p.A1351Gfs*3|1|0.81|ENSG00000134982|chr5:112839644-112839645|-/G|frameshift_variant;APC|p.P1330Qfs*11|1|0.22|ENSG00000134982|chr5:112839583-112839584|CT/-|frameshift_variant;APC|p.L1337Pfs*4|1|0.82|ENSG00000134982|chr5:112839604-112839605|TG/-|frameshift_variant;APC|p.V1414*|4|0.37|ENSG00000134982|chr5:112839833-112839833|G/-|frameshift_variant;APC|p.Y191Lfs*2|1|0.38|ENSG00000134982|chr5:112780828-112780829|-/T|frameshift_variant;APC|p.D849Rfs*2|1|0.3|ENSG00000134982|chr5:112838133-112838134|-/A|frameshift_variant;APC|p.D777Kfs*8|1|0.3|ENSG00000134982|chr5:112837921-112837928|TAGACAAT/-|frameshift_variant;APC|p.H785Qfs*6|1|0.49|ENSG00000134982|chr5:112837933-112837934|-/TCCCAAGGCA|frameshift_variant;APC|p.F801Lfs*19|1|0.31|ENSG00000134982|chr5:112837993-112837993|T/-|frameshift_variant;APC|p.P832Tfs*12|1|0.16|ENSG00000134982|chr5:112838086-112838087|-/A|frameshift_variant;APC|p.R854Vfs*10|1|0.3|ENSG00000134982|chr5:112838140-112838141|-/TAGAAGTT|frameshift_variant;APC|p.D849Vfs*12|1|0.61|ENSG00000134982|chr5:112838140-112838140|A/-|frameshift_variant;APC|p.D849Ifs*12|3|0.47|ENSG00000134982|chr5:112838134-112838134|A/-|frameshift_variant;APC|p.A759Sfs*16|1|0.2|ENSG00000134982|chr5:112837863-112837864|-/A|frameshift_variant;APC|p.D903Sfs*2|1|0.4|ENSG00000134982|chr5:112838300-112838301|-/TCCT|frameshift_variant;APC|p.D777*|1|0.37|ENSG00000134982|chr5:112837920-112837921|-/TC|frameshift_variant;APC|p.K581Rfs*9|1|0.38|ENSG00000134982|chr5:112828967-112828967|A/-|frameshift_variant;APC|p.M743Cfs*18|1|0.29|ENSG00000134982|chr5:112837819-112837819|T/-|frameshift_variant;APC|p.N627Lfs*2|2|0.55|ENSG00000134982|chr5:112835080-112835083|CAGA/-|frameshift_variant;APC|p.V588Yfs*2|1|0.23|ENSG00000134982|chr5:112834969-112834969|G/-|frameshift_variant;APC|p.H913Ifs*3|1|0.31|ENSG00000134982|chr5:112838331-112838331|C/-|frameshift_variant;APC|p.Q541Tfs*19|1|0.63|ENSG00000134982|chr5:112827999-112828000|-/A|frameshift_variant;APC|p.L479Ifs*6|1|0.45|ENSG00000134982|chr5:112827132-112827133|-/A|frameshift_variant;APC|p.E403Kfs*51|1|0.39|ENSG00000134982|chr5:112819238-112819238|T/-|frameshift_variant;APC|p.H361Wfs*3|1|0.6|ENSG00000134982|chr5:112819112-112819113|AC/-|frameshift_variant;APC|p.H307Ifs*29|1|0.68|ENSG00000134982|chr5:112815579-112815579|C/-|frameshift_variant;APC|p.L292Ffs*4|1|0.26|ENSG00000134982|chr5:112815531-112815532|-/T|frameshift_variant;APC|p.A239Qfs*54|1|0.25|ENSG00000134982|chr5:112792515-112792515|G/-|frameshift_variant;APC|p.Q203Tfs*49|1|0.39|ENSG00000134982|chr5:112780862-112780863|-/A|frameshift_variant;APC|p.T899Ifs*12|1|0.4|ENSG00000134982|chr5:112838290-112838291|CC/-|frameshift_variant;APC|p.N961Kfs*5|1|0.45|ENSG00000134982|chr5:112838473-112838474|-/AA|frameshift_variant;APC|p.H913Qfs*39|1|0.23|ENSG00000134982|chr5:112838330-112838339|ACATTGTGTG/-|frameshift_variant;APC|p.A1296Qfs*9|1|0.88|ENSG00000134982|chr5:112839478-112839478|A/-|frameshift_variant;APC|p.E1322Rfs*10|1|0.15|ENSG00000134982|chr5:112839556-112839557|-/C|frameshift_variant;APC|p.P1319Lfs*3|1|0.27|ENSG00000134982|chr5:112839547-112839548|-/TC|frameshift_variant;APC|p.I1311Lfs*10|1|0.45|ENSG00000134982|chr5:112839524-112839524|G/-|frameshift_variant;APC|p.P1319Lfs*2|2|0.32|ENSG00000134982|chr5:112839549-112839549|C/-|frameshift_variant;APC|p.A1305Sfs*10|1|0.24|ENSG00000134982|chr5:112839504-112839505|-/T|frameshift_variant;APC|p.T1313Nfs*2|1|0.51|ENSG00000134982|chr5:112839529-112839530|-/A|frameshift_variant;APC|p.I1311Rfs*3|1|0.46|ENSG00000134982|chr5:112839526-112839527|TT/-|frameshift_variant;APC|p.I1307Rfs*6|1|0.12|ENSG00000134982|chr5:112839511-112839515|AAATA/-|frameshift_variant;APC|p.I1304Mfs*4|1|0.28|ENSG00000134982|chr5:112839506-112839506|A/-|frameshift_variant;APC|p.L1302Cfs*3|1|0.77|ENSG00000134982|chr5:112839496-112839496|C/-|frameshift_variant;APC|p.G1288*|1|0.58|ENSG00000134982|chr5:112839452-112839453|-/AT|frameshift_variant;APC|p.S943Qfs*12|2|0.28|ENSG00000134982|chr5:112838420-112838420|T/-|frameshift_variant;APC|p.S1272Ffs*4|1|0.15|ENSG00000134982|chr5:112839403-112839404|-/T|frameshift_variant;APC|p.S1190Yfs*75|1|0.47|ENSG00000134982|chr5:112839163-112839163|C/-|frameshift_variant;APC|p.S1205Tfs*60|1|0.36|ENSG00000134982|chr5:112839208-112839208|G/-|frameshift_variant;APC|p.C1249Sfs*16|1|0.59|ENSG00000134982|chr5:112839340-112839340|G/-|frameshift_variant;APC|p.S1163Tfs*2|1|0.41|ENSG00000134982|chr5:112839082-112839082|G/-|frameshift_variant;APC|p.Q1067Hfs*64|1|0.06|ENSG00000134982|chr5:112838794-112838795|-/TAATTTATTGGTGT|frameshift_variant;APC|p.Q1067Lfs*14|1|0.06|ENSG00000134982|chr5:112838793-112838794|-/T|frameshift_variant;APC|p.K1053Nfs*3|1|0.39|ENSG00000134982|chr5:112838751-112838751|A/-|frameshift_variant;APC|p.K993*|1|0.18|ENSG00000134982|chr5:112838569-112838570|-/T|frameshift_variant;APC|p.L964*|1|0.44|ENSG00000134982|chr5:112838483-112838483|T/-|frameshift_variant;APC|p.R168Efs*2|1|0.45|ENSG00000134982|chr5:112775705-112775705|A/-|frameshift_variant ENSG00000134982|ENST00000257430|APC ENSG00000134982|ENST00000257430|APC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7807006835938 2 543.766374 1085.5182 NaN NaN NaN NaN NaN NaN NaN 143.32 1 138.29 137.79 138.79 -5.0261 0 0 0 0.21452 1 27630 27630 13.508 3.434 1 22382 181 14757 14762 22148 22148 -0.021142324481161268 KDYDKRHRYI 10 Unmodified _KDYDKRHRYI_ 0 0 0 REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2490234375 3 465.249354 1392.72623 -0.0078886 -3.6702E-06 -1.2507 -0.00058187 -1.2586 -0.00058554 465.24871159652224 106.37 0.62028 102 101.65 102.27 -4.3764 29 17 2 0 0 0 0.47611 1 20398 20398 6.6304 6.4584 1 2528900 + 22383 15597 14758 14763 22149 22149 0.045577694689882264 KDYDRDKDDK 10 Unmodified _KDYDRDKDDK_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 432.9043273925781 3 433.205479 1296.59461 0.15731 6.8148E-05 -0.35942 -0.0001557 -0.20211 -8.7553E-05 433.20528400610743 35.436 0.62109 35.436 35.168 35.789 0 31 17 3 0 0 0 0.91149 1 6473 6473 1.5923 0 1 3046000 22384 1239 14759 14764 22150 22150 -0.04182505409448822 KDYDRDKDDK 10 Unmodified _KDYDRDKDDK_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 433.205479 1296.59461 -0.48906 -0.00021186 0.22949 9.9417E-05 -0.25957 -0.00011245 433.2055237865057 38.051 0.37578 35.583 35.369 35.745 -2.4688 0.03933 0.0006867 NaN 1.5923 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2867700 22385 1239 14759 14764 -0.04182505409448822 KDYDRDKDDK 10 Unmodified _KDYDRDKDDK_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 433.205479 1296.59461 0.032594 1.412E-05 -0.42147 -0.00018258 -0.38888 -0.00016846 433.2053758671577 38.011 0.39518 35.569 35.38 35.775 -2.4419 0.025377 -0.0001593 NaN 1.5923 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1610900 22386 1239 14759 14764 -0.04182505409448822 KDYDRDKDDK 10 Unmodified _KDYDRDKDDK_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 433.205479 1296.59461 -0.0020843 -9.0293E-07 -0.56707 -0.00024566 -0.56915 -0.00024656 433.20522673176856 37.923 0.37858 35.585 35.398 35.776 -2.3375 0.042124 -0.00034852 NaN 1.5923 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1852400 22387 1239 14759 14764 -0.04182505409448822 KDYEEPSPW 9 Unmodified _KDYEEPSPW_ 0 0 0 REV__ENSG00000165156|ENST00000395571|ZHX1 REV__ENSG00000165156|ENST00000395571|ZHX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3115234375 2 575.756204 1149.49785 0.29283 0.0001686 -0.34507 -0.00019867 -0.052238 -3.0076E-05 576.2549797959277 133.85 0.20566 133.85 133.77 133.97 0 8 5 2 0 0 0 0.68435 1 26508 26508 7.2892 1.5288 1 2161000 + 22388 17742 14760 14765 22151 22151 -0.0709144789855145 KDYIRPRF 8 Unmodified _KDYIRPRF_ 0 0 0 HIGD1C|p.S93R|1|0.11|ENSG00000214511|chr12:50970489-50970489|A/C|missense_variant;ENSG00000214511|ENST00000695931|HIGD1C HIGD1C|p.S93R|1|0.11|ENSG00000214511|chr12:50970489-50970489|A/C|missense_variant HIGD1C|p.S93R|1|0.11|ENSG00000214511|chr12:50970489-50970489|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7925415039062 2 547.808908 1093.60326 NaN NaN NaN NaN NaN NaN NaN 149.69 1 149.69 149.19 150.19 0 0 0 0 0.21486 1 29969 29969 12.532 0.89125 1 22389 7728 14761 14766 22152 22152 0.060205578083468936 KDYKKRYILKE 11 Unmodified _KDYKKRYILKE_ 0 0 0 tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1 tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1 tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.4031372070312 2 742.435201 1482.85585 NaN NaN NaN NaN NaN NaN NaN 174.64 1 174.64 174.14 175.14 0 0 0 0 0.23476 1 36161 36161 4.5289 0 1 22390 26496 14762 14767 22153 22153 0.13373526028271954 KDYKSTQEVF 10 Unmodified _KDYKSTQEVF_ 0 0 0 tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1 tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1 tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7802734375 2 622.81151 1243.60847 NaN NaN NaN NaN NaN NaN NaN 138.11 1 133.47 132.97 133.97 -4.6413 0 0 0 0.22588 1 27263 27263 12.241 1.4167 1 22391 25995 14763 14768 22154 22154 -0.003592279103486362 KDYLQKLNG 9 Unmodified _KDYLQKLNG_ 0 0 0 REV__SMG5|p.R254Q|1|0.39|ENSG00000198952|chr1:156268368-156268368|C/T|missense_variant REV__SMG5|p.R254Q|1|0.39|ENSG00000198952|chr1:156268368-156268368|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2008361816406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 137.85 1 132.93 132.43 133.43 -4.9216 0 0 0 0.23508 1 26504 26504 9.544 0 1 + 22392 24658 14764 14769 22155 22155 0.046171279889904326 KDYSFYNDK 9 Unmodified _KDYSFYNDK_ 0 0 0 REV__tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1 REV__tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.271728515625 2 590.269478 1178.5244 NaN NaN NaN NaN NaN NaN NaN 168.2 1 163.41 162.91 163.91 -4.7898 0 0 0 0.23508 1 33985 33985 8.7454 2.5396 1 + 22393 25361 14765 14770 22156 22156 -0.0577175900725706 KDYYKKQV 8 Unmodified _KDYYKKQV_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant;DNAH9|p.I3688Tfs*40|1|0.11|ENSG00000007174|chr17:11886915-11886924|ATCATGAACG/-|frameshift_variant;DNAH9|p.P2650Hfs*2|2|0.29|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.56072998046875 3 357.865958 1070.57605 -0.66329 -0.00023737 1.0575 0.00037843 0.39417 0.00014106 357.8662580057994 85.261 0.30786 81.55 81.358 81.666 -3.7117 11 8 2 0 0 0 0.89687 1 16272 16272 3.2813 0.78282 1 554990 22394 1016 14766 14771 22157 22157 0.043580294773164496 KEAAHYQI 8 Unmodified _KEAAHYQI_ 0 0 0 FGD4|p.K16Nfs*24|1|0.35|ENSG00000139132|chr12:32576401-32576401|A/-|frameshift_variant FGD4|p.K16Nfs*24|1|0.35|ENSG00000139132|chr12:32576401-32576401|A/-|frameshift_variant FGD4|p.K16Nfs*24|1|0.35|ENSG00000139132|chr12:32576401-32576401|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2544250488281 2 480.250892 958.48723 0.06202 2.9785E-05 2.31 0.0011094 2.372 0.0011392 480.25107564470267 98.688 0.59149 94.555 94.193 94.784 -4.1326 42 16 4 0 0 0 0.68128 1 19329 19329 16.942 5.302 1 1873100 22395 11813 14767 14772 22158 22158 0.006326142376565258 KEAEGAPQV 9 Unmodified _KEAEGAPQV_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24169921875 2 464.740357 927.46616 1.0789 0.0005014 -0.29857 -0.00013876 0.78032 0.00036265 464.74014173020873 26.112 0.44369 24.33 24.039 24.483 -1.7821 21 12 2 0 0 0 0.41321 2 4623 4574;4623 32.037 4.4087 1 783060 22396 367 14768 14773 22159;22160 22160 -0.0004739586186133238 KEAKEFAKK 9 Unmodified _KEAKEFAKK_ 0 0 0 ENST00000555749.5_1_14:57710864-57735366:-|nuORF;ENST00000554598.5_1_14:57706266-57735366:-|nuORF;EXOC5|p.L483Ffs*15|1|0.17|ENSG00000070367|chr14:57219399-57219400|-/A|frameshift_variant;ENSG00000070367|ENST00000621441|EXOC5;ENST00000510543.1_1_4:63682712-63682895:+|nuORF;ENST00000556911.5_1_14:57710351-57713533:-|nuORF ENST00000555749.5_1_14:57710864-57735366:-|nuORF ENST00000555749.5_1_14:57710864-57735366:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21240234375 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 65.286 1 62.003 61.503 62.503 -3.2832 0 0 0 0.22378 1 12271 12271 16.566 2.951 1 22397 1430 14769 14774 22161 22161 0.0825400488570267 KEAPPMEKP 9 Oxidation (M) _KEAPPM(Oxidation (M))EKP_ KEAPPM(1)EKP KEAPPM(190)EKP 0 0 1 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2669067382812 2 521.765517 1041.51648 0.09199 4.7997E-05 -0.12672 -6.612E-05 -0.034734 -1.8123E-05 521.7655000511395 14.467 1.1257 14.467 14 15.125 0 111 31 5 0 0 0 2.7592E-33 4 2181 2130;2133;2181;2228 190.03 132.31 1 37238000 22398 2837 14770 14775 22162;22163;22164;22165 22164 33 -0.0026160952838836238 KEAPPMEKP 9 Oxidation (M) _KEAPPM(Oxidation (M))EKP_ KEAPPM(1)EKP KEAPPM(170)EKP 0 0 1 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26708984375 2 521.765517 1041.51648 -0.80367 -0.00041933 0.69227 0.0003612 -0.1114 -5.8127E-05 521.7659346211041 15.438 1.331 14.324 13.78 15.111 -1.1142 116 37 4 0 0 0 1.3899E-16 5 2339 2294;2339;2387;2430;2432 165.58 115.65 1 21644000 22399 2837 14770 14775 22166;22167;22168;22169;22170 22167 33 -0.0026160952838836238 KEAPPMEKP 9 Oxidation (M) _KEAPPM(Oxidation (M))EKP_ KEAPPM(1)EKP KEAPPM(170)EKP 0 0 1 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2672119140625 2 521.765517 1041.51648 -1.2879 -0.00067199 1.2081 0.00063036 -0.079794 -4.1634E-05 521.7661901907514 15.439 1.8858 14.217 13.752 15.638 -1.2219 129 54 4 0 0 0 1.3899E-16 3 2136 2136;2184;2186 165.58 107.86 1 18080000 22400 2837 14770 14775 22171;22172;22173 22171 33 -0.0026160952838836238 KEARKFFR 8 Unmodified _KEARKFFR_ 0 0 0 BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2;nc|ENSG00000160469|Q8TDC3-3|BRSK1;BRSK2|p.R355Gfs*4|2|0.39|ENSG00000174672|chr11:1445650-1445650|C/-|frameshift_variant;nc|ENSG00000174672|Q8IWQ3-6|BRSK2;ENSG00000160469|ENST00000309383|BRSK1;nc|ENSG00000160469|Q8TDC3-2|BRSK1 BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.277099609375 2 541.3169 1080.61925 NaN NaN NaN NaN NaN NaN NaN 163.04 1 158.25 157.75 158.75 -4.7898 0 0 0 0.2325 1 32473 32473 1.4551 0.38992 1 22401 337 14771 14776 22174 22174 0.08216264045267963 KEAVLAEKR 9 Unmodified _KEAVLAEKR_ 0 0 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2786254882812 2 522.314023 1042.61349 -0.72835 -0.00038043 0.62889 0.00032848 -0.09946 -5.1949E-05 522.3143603590104 15.818 0.2098 14.602 14.445 14.655 -1.2159 8 5 2 0 0 0 0.85913 1 2461 2461 3.2813 0 1 473540 22402 5840 14772 14777 22175 22175 0.0938912074293512 KEAVTTIAA 9 Unmodified _KEAVTTIAA_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7650451660156 2 452.260925 902.507297 0.38643 0.00017477 -0.47587 -0.00021522 -0.089446 -4.0453E-05 452.2606715070912 39.773 1.1266 39.773 39.372 40.499 0 83 31 5 0 0 0 0.10537 2 7395 7395;7397 74.216 59.258 1 148060000 22403 3536 14773 14778 22176;22177 22176 0.052143651776077604 KEAVTTIAA 9 Unmodified _KEAVTTIAA_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76483154296875 2 452.260925 902.507297 -0.2575 -0.00011646 -0.0025677 -1.1613E-06 -0.26007 -0.00011762 452.2609171381444 42.154 0.80763 39.435 39.069 39.877 -2.7191 80 22 5 0 0 0 0.069179 4 7894 7847;7848;7894;7895 81.552 66.595 1 151220000 22404 3536 14773 14778 22178;22179;22180;22181 22180 0.052143651776077604 KEAVTTIAA 9 Unmodified _KEAVTTIAA_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7648010253906 2 452.260925 902.507297 -0.10964 -4.9584E-05 -0.18243 -8.2508E-05 -0.29207 -0.00013209 452.26083747809815 42.169 1.3292 39.518 39.069 40.398 -2.651 94 37 5 0 0 0 0.051332 3 7583 7539;7579;7583 74.772 63.873 1 150250000 22405 3536 14773 14778 22182;22183;22184 22184 0.052143651776077604 KEAVTTIAA 9 Unmodified _KEAVTTIAA_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7649230957031 2 452.260925 902.507297 -0.032492 -1.4695E-05 -0.23745 -0.00010739 -0.26994 -0.00012208 452.2608032688845 42.127 1.3303 39.521 39.118 40.448 -2.606 104 37 5 0 0 0 0.069179 4 7577 7537;7538;7577;7580 81.552 69.982 1 148760000 22406 3536 14773 14778 22185;22186;22187;22188 22187 0.052143651776077604 KECECDSVNSA 11 Unmodified _KECECDSVNSA_ 0 0 0 REV__ENST00000379170.8_2_6:13801550-13814671:-|nuORF REV__ENST00000379170.8_2_6:13801550-13814671:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 592.45849609375 2 592.731545 1183.44854 NaN NaN NaN NaN NaN NaN NaN 167.4 1 162.5 162 163 -4.8916 0 0 0 0.23429 1 32917 32917 4.897 0.56777 1 + 22407 21132 14774 14779 22189 22189 -0.13584847241327225 KEDERLYL 8 Unmodified _KEDERLYL_ 0 0 0 tr|U7T474|U7T474_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00282PE=4SV=1 tr|U7T474|U7T474_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00282PE=4SV=1 tr|U7T474|U7T474_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00282PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2811279296875 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 116.97 1 112.61 112.11 113.11 -4.3585 0 0 0 0.19753 1 22517 22517 25.399 0 1 22408 26428 14775 14780 22190 22190 0.02053135235018999 KEDSPLDYIWI 11 Unmodified _KEDSPLDYIWI_ 0 0 0 tr|U7SHZ9|U7SHZ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02179PE=4SV=1 tr|U7SHZ9|U7SHZ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02179PE=4SV=1 tr|U7SHZ9|U7SHZ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02179PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2324523925781 3 460.234487 1377.68163 NaN NaN NaN NaN NaN NaN NaN 137.34 1 132.5 132 133 -4.84 0 0 0 0.22632 1 26457 26457 5.4027 5.3968 1 22409 25920 14776 14781 22191 22191 0.00789900812264932 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3019409179688 2 602.301841 1202.58913 0.37037 0.00022308 0.19648 0.00011834 0.56685 0.00034142 602.3019020442091 20.556 0.42862 20.556 20.313 20.742 0 33 11 4 0 0 0 0.4577 1 3386 3386 40.239 5.3071 1 5176800 + 22410 16525 14777 14782 22192 22192 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3019409179688 2 602.301841 1202.58913 0.37747 0.00022735 0.12493 7.5246E-05 0.50241 0.0003026 602.3019050468191 21.023 1.0968 21.023 20.742 21.838 0 83 31 5 0 0 0 0.71251 1 3654 3654 10.899 2.7434 1 29610000 + 22411 16525 14777 14782 22193 22193 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3019409179688 2 602.301841 1202.58913 0.40186 0.00024204 0.063659 3.8342E-05 0.46552 0.00028039 602.3018504194963 22.63 0.56314 22.63 22.364 22.927 0 45 15 4 0 0 0 0.36425 2 3799 3799;3870 47.594 4.4773 1 11886000 + 22412 16525 14777 14782 22194;22195 22194 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3016357421875 2 602.301841 1202.58913 0.41431 0.00024954 -0.42181 -0.00025406 -0.0075051 -4.5203E-06 602.3016316129228 23.457 0.38934 23.457 23.267 23.657 0 16 10 2 0 0 0 0.42077 1 4001 4001 27.223 3.2027 1 811700 + 22413 16525 14777 14782 22196 22196 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.27685546875 2 602.301841 1202.58913 0.22663 0.0001365 0.27129 0.0001634 0.49792 0.0002999 602.3019757339406 22.344 0.84542 20.89 20.595 21.44 -1.4535 72 23 5 0 0 0 0.35468 1 3594 3594 55.503 3.2344 1 25761000 + 22414 16525 14777 14782 22197 22197 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3018188476562 2 602.301841 1202.58913 0.33675 0.00020282 0.03178 1.9141E-05 0.36853 0.00022196 602.3018279938766 24.055 0.52555 22.52 22.259 22.785 -1.5342 44 14 4 0 0 0 0.097803 1 3899 3899 76.825 15.467 1 11015000 + 22415 16525 14777 14782 22198 22198 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3019409179688 2 602.301841 1202.58913 -0.2114 -0.00012733 0.57502 0.00034634 0.36362 0.00021901 602.3021449508523 24.313 0.55455 22.459 22.155 22.71 -1.8534 44 15 4 0 0 0 0.33358 1 3963 3963 59.368 7.1 1 7413800 + 22416 16525 14777 14782 22199 22199 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.276123046875 2 602.301841 1202.58913 -0.089523 -5.392E-05 0.46619 0.00028079 0.37667 0.00022687 602.3022449593103 25.127 0.38159 23.274 23.084 23.465 -1.8534 15 10 2 0 0 0 0.53127 1 4120 4120 21.59 1.9642 1 782520 + 22417 16525 14777 14782 22200 22200 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3017578125 2 602.301841 1202.58913 -0.019585 -1.1796E-05 1.0101 0.0006084 0.99054 0.0005966 602.3022354547234 25.615 0.34907 23.762 23.534 23.883 -1.8534 15 9 2 0 0 0 0.69375 1 4212 4212 12.175 2.1008 1 362480 + 22418 16525 14777 14782 22201 22201 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 602.301841 1202.58913 0.41431 0.00024954 -0.42181 -0.00025406 -0.0075051 -4.5203E-06 602.3016316129228 23.457 0.38934 23.457 23.267 23.657 0 -0.021528 -0.00040557 NaN 27.223 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 811700 + 22419 16525 14777 14782 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 602.301841 1202.58913 0.37747 0.00022735 0.12493 7.5246E-05 0.50241 0.0003026 602.3019050468191 21.023 1.0968 21.023 20.742 21.838 0 0.0663 -8.49E-05 NaN 55.503 83 31 5 NaN NaN NaN NaN 0 NaN NaN 0 29610000 + 22420 16525 14777 14782 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 602.301841 1202.58913 0.42181 0.00025406 1.2882 0.00077589 1.71 0.00103 602.3027872096524 23.949 0.44102 23.949 23.725 24.167 0 0.10923 0.00047972 NaN 12.175 14 12 2 NaN NaN NaN NaN 0 NaN NaN 0 746250 + 22421 16525 14777 14782 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 602.301841 1202.58913 2.1797 0.0013128 -1.259 -0.00075829 0.92071 0.00055455 602.3010971623874 25.462 0.31672 23.814 23.649 23.966 -1.6482 0.33537 -0.001414 NaN 27.223 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 557370 + 22422 16525 14777 14782 -0.004061842012333727 KEDTAQGEVRA 11 Unmodified _KEDTAQGEVRA_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 602.301841 1202.58913 0.42498 0.00025597 0.57062 0.00034369 0.99561 0.00059966 602.3022638524887 25.343 0.34689 23.809 23.68 24.027 -1.5342 -0.031143 -0.00038469 NaN 12.175 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 694760 + 22423 16525 14777 14782 -0.004061842012333727 KEDYNRLRRE 10 Unmodified _KEDYNRLRRE_ 0 0 0 nc|ENSG00000162946|Q9NRI5-9|DISC1;nc|ENSG00000162946|Q9NRI5-3|DISC1;nc|ENSG00000162946|Q9NRI5-8|DISC1;DISC1|p.R735Gfs*12|1|0.33|ENSG00000162946|chr1:232008939-232008939|C/-|frameshift_variant;nc|ENSG00000162946|Q9NRI5-5|DISC1;ENST00000422590.6_1_1:231829618-232144897:+|nuORF;nc|ENSG00000162946|Q9NRI5-2|DISC1;ENSG00000162946|ENST00000439617|DISC1 nc|ENSG00000162946|Q9NRI5-9|DISC1 nc|ENSG00000162946|Q9NRI5-9|DISC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2442321777344 3 460.24438 1377.71131 NaN NaN NaN NaN NaN NaN NaN 155.25 1 150.47 149.97 150.97 -4.7791 0 0 0 2.8426 1 30861 30861 0.26539 0.2216 1 22424 840 14778 14783 22202 22202 0.037562776009508525 KEEALLQDF 9 Unmodified _KEEALLQDF_ 0 0 0 REV__nc|ENSG00000133392|P35749-4|MYH11;REV__ENSG00000100345|ENST00000216181|MYH9;REV__nc|ENSG00000105357|Q7Z406|MYH14;REV__nc|ENSG00000133026|P35580|MYH10 REV__nc|ENSG00000105357|Q7Z406|MYH14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7852783203125 2 546.782222 1091.54989 0.26751 0.00014627 -0.10113 -5.5295E-05 0.16638 9.0974E-05 546.7821625461286 62.53 0.97648 59.568 59.044 60.021 -2.9614 63 27 3 0 0 0 0.39189 1 12138 12138 26.268 0.86883 1 13658000 + 22425 14980;16164;14695;16148 14779 14784 22203 22203 0.007777155151643456 KEEDCKEY 8 Unmodified _KEEDCKEY_ 0 0 0 nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11 nc|ENSG00000160695|Q9H270|VPS11 nc|ENSG00000160695|Q9H270|VPS11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2786254882812 2 522.221139 1042.42773 -0.731 -0.00038174 -0.88934 -0.00046443 -1.6203 -0.00084618 522.2208620892012 15.783 0.2098 14.567 14.445 14.655 -1.2159 8 5 2 0 0 0 1.0231 1 2461 2461 4.3292 0 1 548910 22426 5262 14780 14785 22204 22204 -0.09179069558695119 KEEDKVLAY 9 Unmodified _KEEDKVLAY_ 0 0 0 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7898559570312 2 547.790047 1093.56554 0.08186 4.4842E-05 4.1602 0.0022789 4.2421 0.0023238 548.2953104579295 53.955 0.1382 50.82 50.731 50.869 -3.1352 5 3 2 0 0 0 0.67531 1 9945 9945 7.9102 1.187 1 534130 22427 6949 14781 14786 22205 22205 0.022500020322468117 KEEENLQVP 9 Unmodified _KEEENLQVP_ 0 0 0 MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant;MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4 MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7787475585938 2 543.277303 1084.54005 0.025951 1.4099E-05 0.17456 9.4837E-05 0.20052 0.00010894 543.2774252338993 61.363 1.0004 61.363 60.802 61.803 0 50 28 2 0 0 0 0.086396 2 11776 11776;11816 60.074 8.4441 1 2575500 22428 2470 14782 14787 22206;22207 22206 0.001165275098173879 KEEENLQVP 9 Unmodified _KEEENLQVP_ 0 0 0 MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant;MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4 MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.779541015625 2 543.277303 1084.54005 0.26246 0.00014259 0.56128 0.00030493 0.82375 0.00044752 543.2776946057884 64.222 0.90603 61.225 60.697 61.603 -2.9975 37 25 2 0 0 0 0.11219 1 12405 12405 51.63 13.454 1 1412900 22429 2470 14782 14787 22208 22208 0.001165275098173879 KEEENLQVP 9 Unmodified _KEEENLQVP_ 0 0 0 MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant;MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4 MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79345703125 2 543.277303 1084.54005 0.22191 0.00012056 0.37908 0.00020594 0.60099 0.0003265 543.2775574066485 64.634 0.73605 61.175 60.769 61.505 -3.4581 29 20 2 0 0 0 0.11219 1 12098 12098 51.63 9.6743 1 1531100 22430 2470 14782 14787 22209 22209 0.001165275098173879 KEEENLQVP 9 Unmodified _KEEENLQVP_ 0 0 0 MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant;MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4 MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7791748046875 2 543.277303 1084.54005 0.37553 0.00020402 0.42069 0.00022855 0.79623 0.00043257 543.2775394710735 64.414 1.1078 61.157 60.744 61.852 -3.2567 44 31 2 0 0 0 0.74858 1 12165 12165 22.736 0 1 1294100 22431 2470 14782 14787 22210 22210 0.001165275098173879 KEEENLQVP 9 Unmodified _KEEENLQVP_ 0 0 0 MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant;MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4 MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant MTMR4|p.Q191Pfs*11|1|0.38|ENSG00000108389|chr17:58508254-58508255|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.277303 1084.54005 0.25017 0.00013591 -0.47003 -0.00025536 -0.21987 -0.00011945 543.2774311850408 64.744 0.10264 61.716 61.645 61.747 -3.028 0.17667 -0.00065002 NaN 60.074 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 319660 22432 2470 14782 14787 0.001165275098173879 KEEFRAYKIWN 11 Unmodified _KEEFRAYKIWN_ 0 0 0 REV__ENSG00000101343|ENST00000536226|CRNKL1 REV__ENSG00000101343|ENST00000536226|CRNKL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3899536132812 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 46.968 1 44.026 43.526 44.526 -2.9421 0 0 0 0.23698 1 8549 8549 1.3295 0.13619 1 + 22433 14781 14783 14788 22211 22211 0.039878069259884796 KEEFSKVEP 9 Unmodified _KEEFSKVEP_ 0 0 0 REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9 REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.771484375 2 546.782222 1091.54989 0.26751 0.00014627 -0.10113 -5.5295E-05 0.16638 9.0974E-05 546.7821625461286 62.53 0.97648 59.568 59.044 60.021 -2.9614 63 27 3 0 0 0 0.36931 1 12131 12131 27.629 4.8925 1 13658000 + 22434 23961 14784 14789 22212 22212 0.007777155151870829 KEEKLRHYFRY 11 Unmodified _KEEKLRHYFRY_ 0 0 0 ENSG00000167434|ENST00000300900|CA4 ENSG00000167434|ENST00000300900|CA4 ENSG00000167434|ENST00000300900|CA4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3883666992188 2 784.920249 1567.82595 NaN NaN NaN NaN NaN NaN NaN 169.01 1 169.01 168.51 169.51 0 0 0 0 0.22632 1 34669 34669 0.026206 0 1 22435 5808 14785 14790 22213 22213 0.06474587082925609 KEEKLRHYFRY 11 Unmodified _KEEKLRHYFRY_ 0 0 0 ENSG00000167434|ENST00000300900|CA4 ENSG00000167434|ENST00000300900|CA4 ENSG00000167434|ENST00000300900|CA4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.39794921875 2 784.920249 1567.82595 NaN NaN NaN NaN NaN NaN NaN 150.82 1 146.09 145.59 146.59 -4.7323 0 0 0 0.22632 1 29957 29957 0.026206 0 1 22436 5808 14785 14790 22214 22214 0.06474587082925609 KEEKLSQAY 9 Unmodified _KEEKLSQAY_ 0 0 0 ENSG00000161654|ENST00000293406|LSM12;nc|ENSG00000161654|Q3MHD2-2|LSM12 ENSG00000161654|ENST00000293406|LSM12 ENSG00000161654|ENST00000293406|LSM12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.78369140625 2 548.287671 1094.56079 0.11355 6.2256E-05 0.056589 3.1027E-05 0.17013 9.3283E-05 548.2876702188589 25.519 0.37788 23.954 23.787 24.165 -1.5654 15 10 2 0 0 0 0.47592 1 4213 4213 19.626 14.729 1 1009100 22437 5295 14786 14791 22215 22215 0.017291178894765835 KEEKLSQAY 9 Unmodified _KEEKLSQAY_ 0 0 0 ENSG00000161654|ENST00000293406|LSM12;nc|ENSG00000161654|Q3MHD2-2|LSM12 ENSG00000161654|ENST00000293406|LSM12 ENSG00000161654|ENST00000293406|LSM12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 548.287671 1094.56079 0.36052 0.00019767 -0.087825 -4.8153E-05 0.2727 0.00014952 548.2874752061617 23.978 0.37421 23.978 23.792 24.167 0 0.016411 0.00010344 NaN 19.626 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 797450 22438 5295 14786 14791 0.017291178894765835 KEEKLSQAY 9 Unmodified _KEEKLSQAY_ 0 0 0 ENSG00000161654|ENST00000293406|LSM12;nc|ENSG00000161654|Q3MHD2-2|LSM12 ENSG00000161654|ENST00000293406|LSM12 ENSG00000161654|ENST00000293406|LSM12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 548.287671 1094.56079 0.0036825 2.0191E-06 0.21498 0.00011787 0.21867 0.00011989 548.2878855956178 25.789 0.34933 23.866 23.671 24.02 -1.9222 -0.095554 0.00043549 NaN 19.626 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1492000 22439 5295 14786 14791 0.017291178894765835 KEELNHPL 8 Unmodified _KEELNHPL_ 0 0 0 ENSG00000108651|ENST00000261708|UTP6;ENST00000581012.6_1_17:30190380-30195078:-|nuORF ENSG00000108651|ENST00000261708|UTP6 ENSG00000108651|ENST00000261708|UTP6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26416015625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 75.454 1 75.454 74.954 75.954 0 0 0 0 0.21486 1 14655 14655 12.532 0 1 22440 2491 14787 14792 22216 22216 0.023328834091330464 KEEMATQA 8 Unmodified _KEEMATQA_ 0 0 0 tr|U7STK6|U7STK6_FUSNUArabinose-5-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01093PE=3SV=1 tr|U7STK6|U7STK6_FUSNUArabinose-5-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01093PE=3SV=1 tr|U7STK6|U7STK6_FUSNUArabinose-5-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01093PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7510681152344 2 454.213117 906.411682 0.28634 0.00013006 -0.62735 -0.00028495 -0.34101 -0.00015489 454.213010910698 29.948 0.69335 29.948 29.541 30.235 0 28 19 2 0 0 0 0.91917 1 5336 5336 14.838 0 1 608020 22441 26159 14788 14793 22217 22217 -0.045267310049325715 KEEREIKD 8 Unmodified _KEEREIKD_ 0 0 0 nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;ENST00000409532.5_2_2:173366626-173368977:+|nuORF nc|ENSG00000091409|P23229-5|ITGA6 nc|ENSG00000091409|P23229-5|ITGA6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6989135742188 2 523.77747 1045.54039 NaN NaN NaN NaN NaN NaN NaN 19.288 1 17.963 17.463 18.463 -1.3251 0 0 0 0.20618 1 2929 2929 20.454 2.3073 1 22442 12249 14789 14794 22218 22218 0.019439472296880922 KEERKGSGEQI 11 Unmodified _KEERKGSGEQI_ 0 0 0 REV__ENSG00000172244|ENST00000306862|C5orf34 REV__ENSG00000172244|ENST00000306862|C5orf34 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7611694335938 2 630.830766 1259.64698 NaN NaN NaN NaN NaN NaN NaN 128.31 1 123.57 123.07 124.07 -4.7408 0 0 0 0.2018 1 24686 24686 18.373 1.2602 1 + 22443 18277 14790 14795 22219 22219 0.027540777241938486 KEERRITY 8 Unmodified _KEERRITY_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7728271484375 2 547.80128 1093.58801 NaN NaN NaN NaN NaN NaN NaN 63.672 1 60.256 59.756 60.756 -3.4158 0 0 0 0.20896 1 11898 11898 18.135 3.7296 1 22444 2429 14791 14796 22220 22220 0.044956462205163916 KEESPGTRY 9 Unmodified _KEESPGTRY_ 0 0 0 REV__ENSG00000004534|ENST00000266022|RBM6 REV__ENSG00000004534|ENST00000266022|RBM6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2608032226562 2 533.76182 1065.50909 0.16588 8.8543E-05 1.5912 0.00084933 1.7571 0.00093787 533.762563791569 36.627 0.74288 36.627 36.317 37.06 0 32 20 2 0 0 0 0.85913 1 6755 6755 6.2058 2.0163 1 1217400 + 22445 13837 14792 14797 22221 22221 -0.021046258044179922 KEEVELDI 8 Unmodified _KEEVELDI_ 0 0 0 REV__ENSG00000105401|ENST00000222005|CDC37 REV__ENSG00000105401|ENST00000222005|CDC37 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 489.2382507324219 2 487.755672 973.496792 0.16406 8.002E-05 0.010847 5.2909E-06 0.17491 8.5311E-05 487.7556277992915 123.69 0.98964 123.69 123.27 124.26 0 81 27 4 0 0 0 8448 1 24368 24368 33.593 10.973 1 44361000 + 22446 14988 14793 14798 22222 22222 0.008983377325421316 KEEWHWHPDPA 11 Unmodified _KEEWHWHPDPA_ 0 0 0 ENST00000336138.3_1_8:143816880-143817129:+|nuORF ENST00000336138.3_1_8:143816880-143817129:+|nuORF ENST00000336138.3_1_8:143816880-143817129:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 716.2921142578125 2 716.32565 1430.63675 NaN NaN NaN NaN NaN NaN NaN 174.75 1 174.75 174.25 175.25 0 0 0 0 0.22632 1 36184 36184 0.026206 0 1 22447 8806 14794 14799 22223 22223 -0.06134485210395724 KEFDHPHVA 9 Unmodified _KEFDHPHVA_ 0 0 0 ENSG00000092445|ENST00000263798|TYRO3 ENSG00000092445|ENST00000263798|TYRO3 ENSG00000092445|ENST00000263798|TYRO3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2112121582031 3 360.513807 1078.51959 -0.21478 -7.7431E-05 0.15996 5.7669E-05 -0.054818 -1.9763E-05 360.51383838502784 23.483 0.97284 23.483 22.96 23.933 0 71 27 5 0 0 0 0.070777 1 4000 4000 47.987 45.105 1 29011000 22448 1836 14795 14800 22224 22224 -0.01652598359351032 KEFDHPHVA 9 Unmodified _KEFDHPHVA_ 0 0 0 ENSG00000092445|ENST00000263798|TYRO3 ENSG00000092445|ENST00000263798|TYRO3 ENSG00000092445|ENST00000263798|TYRO3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2697143554688 2 540.267073 1078.51959 -0.059174 -3.197E-05 -0.1123 -6.067E-05 -0.17147 -9.264E-05 540.2670691166601 25.306 0.44957 23.453 23.223 23.672 -1.8534 29 12 3 0 0 0 0.09885 2 4163 4163;4169 56.177 34.43 1 3096200 22449 1836 14795 14800 22225;22226 22225 -0.01652598359351032 KEFDHPHVA 9 Unmodified _KEFDHPHVA_ 0 0 0 ENSG00000092445|ENST00000263798|TYRO3 ENSG00000092445|ENST00000263798|TYRO3 ENSG00000092445|ENST00000263798|TYRO3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.267073 1078.51959 0.30676 0.00016573 -0.21522 -0.00011628 0.091535 4.9453E-05 540.2668428645001 23.476 0.49242 23.476 23.233 23.725 0 -0.020377 -4.8291E-05 NaN 56.177 43 13 4 NaN NaN NaN NaN 0 NaN NaN 0 6782100 22450 1836 14795 14800 -0.01652598359351032 KEFDHPHVA 9 Unmodified _KEFDHPHVA_ 0 0 0 ENSG00000092445|ENST00000263798|TYRO3 ENSG00000092445|ENST00000263798|TYRO3 ENSG00000092445|ENST00000263798|TYRO3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.267073 1078.51959 0.15581 8.4178E-05 -0.1722 -9.3034E-05 -0.016393 -8.8565E-06 540.2669570878548 25.093 0.59025 23.559 23.195 23.786 -1.5342 0.063321 -1.8053E-06 NaN 56.177 41 16 4 NaN NaN NaN NaN 0 NaN NaN 0 4176200 22451 1836 14795 14800 -0.01652598359351032 KEFHCKKY 8 Unmodified _KEFHCKKY_ 0 0 0 ENSG00000168505|ENST00000306318|GBX2;ENSG00000164900|ENST00000297537|GBX1 ENSG00000168505|ENST00000306318|GBX2 ENSG00000168505|ENST00000306318|GBX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2738647460938 2 541.776219 1081.53789 0.31497 0.00017064 0.12394 6.7147E-05 0.4389 0.00023779 542.2782804190944 115.34 1.514 115.34 114.15 115.66 0 107 42 5 0 0 0 0.76308 1 22609 22609 6.3914 3.7602 1 4454500 22452 5916 14796 14801 22227 22227 0.0003782029100420914 KEFKDFWEYYK 11 Unmodified _KEFKDFWEYYK_ 0 0 0 MCM9|p.E289K|1|0.23|ENSG00000111877|chr6:118917600-118917600|C/T|missense_variant MCM9|p.E289K|1|0.23|ENSG00000111877|chr6:118917600-118917600|C/T|missense_variant MCM9|p.E289K|1|0.23|ENSG00000111877|chr6:118917600-118917600|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 791.8847045898438 2 791.882467 1581.75038 NaN NaN NaN NaN NaN NaN NaN 173.94 1 169.05 168.55 169.55 -4.8916 0 0 0 0.23698 1 34604 34604 2.4985 1.169 1 22453 12118 14797 14802 22228 22228 -0.017224348879835816 KEFKVEVY 8 Unmodified _KEFKVEVY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.261474609375 2 521.2844 1040.55425 0.056579 2.9494E-05 -0.014009 -7.3026E-06 0.04257 2.2191E-05 521.2843091528044 71.021 0.79007 71.021 70.592 71.382 0 56 22 3 0 0 0 0.39104 1 13766 13766 32.786 8.7651 1 18401000 22454 3487;12310 14798 14803 22229 22229 0.0355922472876955 KEFKVEVY 8 Unmodified _KEFKVEVY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.2844 1040.55425 -0.31427 -0.00016383 0.38578 0.0002011 0.071504 3.7274E-05 521.2844939933508 74.236 0.80185 70.872 70.47 71.272 -3.3643 -0.015636 0.00018815 NaN 32.786 56 22 3 NaN NaN NaN NaN 0 NaN NaN 0 15145000 22455 3487;12310 14798 14803 0.0355922472876955 KEFKVEVY 8 Unmodified _KEFKVEVY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.2844 1040.55425 -0.539 -0.00028097 0.6352 0.00033112 0.096196 5.0146E-05 521.2846561062959 74.495 0.79386 70.818 70.45 71.244 -3.6764 -0.068998 0.00044819 NaN 32.786 61 22 3 NaN NaN NaN NaN 0 NaN NaN 0 10227000 22456 3487;12310 14798 14803 0.0355922472876955 KEFKVEVY 8 Unmodified _KEFKVEVY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.2844 1040.55425 0.39713 0.00020702 -0.30748 -0.00016029 0.089645 4.673E-05 521.2841579039738 74.432 0.94212 70.838 70.396 71.338 -3.594 -0.049205 -0.00053462 NaN 32.786 65 26 3 NaN NaN NaN NaN 0 NaN NaN 0 11463000 22457 3487;12310 14798 14803 0.0355922472876955 KEFPGFLEN 9 Unmodified _KEFPGFLEN_ 0 0 0 ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2738647460938 2 540.771657 1079.52876 0.27941 0.0001511 0.55161 0.0002983 0.83102 0.00044939 540.7718925751209 115.28 2.4152 115.28 113.91 116.32 0 130 68 2 0 0 0 0.0046473 12 22613 22428;22469;22498;22562;22586;22613;22665;22715;22755;22766;22775;22827 114.5 56.775 1 12685000 22458 7395 14799 14804 22230;22231;22232;22233;22234;22235;22236;22237;22238;22239;22240;22241 22235 -0.007822497936558648 KEFPGFLEN 9 Unmodified _KEFPGFLEN_ 0 0 0 ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2734375 2 540.771657 1079.52876 0.49005 0.000265 0.41163 0.0002226 0.90167 0.0004876 540.7715502176517 119.74 2.5981 115.21 113.74 116.34 -4.5221 227 73 5 0 0 0 2.8733E-07 10 23579 23404;23440;23488;23532;23579;23623;23664;23680;23714;23749 142.92 72.587 1 19813000 22459 7395 14799 14804 22242;22243;22244;22245;22246;22247;22248;22249;22250;22251 22246 -0.007822497936558648 KEFPGFLEN 9 Unmodified _KEFPGFLEN_ 0 0 0 ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2734375 2 540.771657 1079.52876 0.64181 0.00034707 0.37748 0.00020413 1.0193 0.0005512 540.7715305426082 119.59 2.6116 114.94 113.71 116.32 -4.645 241 73 5 0 0 0 0.0046473 11 23047 22811;22824;22865;22906;22914;23001;23047;23055;23090;23134;23183 114.5 56.775 1 15538000 22460 7395 14799 14804 22252;22253;22254;22255;22256;22257;22258;22259;22260;22261;22262 22258 -0.007822497936558648 KEFPGFLEN 9 Unmodified _KEFPGFLEN_ 0 0 0 ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2733764648438 2 540.771657 1079.52876 0.47487 0.0002568 0.040619 2.1966E-05 0.51549 0.00027876 540.7715781401893 119.52 2.7678 115.05 113.65 116.42 -4.467 207 78 3 0 0 0 0.00012453 11 22932 22831;22835;22881;22932;22956;23022;23073;23119;23146;23196;23210 124.95 67.231 1 19087000 22461 7395 14799 14804 22263;22264;22265;22266;22267;22268;22269;22270;22271;22272;22273 22266 -0.007822497936558648 KEFVEVEEA 9 Unmodified _KEFVEVEEA_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2604370117188 2 540.266404 1078.51826 1.3167 0.00071139 -0.29703 -0.00016047 1.0197 0.00055092 540.2662954128837 25.246 0.6629 23.598 23.303 23.966 -1.6482 37 18 3 0 0 0 0.55979 1 4431 4431 15.847 15.847 1 3371600 + 22462 17221 14800 14805 22274 22274 -0.017862772387616133 KEGDERLNKD 10 Unmodified _KEGDERLNKD_ 0 0 0 REV__ENSG00000114353|ENST00000313601|GNAI2 REV__ENSG00000114353|ENST00000313601|GNAI2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3018798828125 2 602.301841 1202.58913 -0.45981 -0.00027694 0.91304 0.00054992 0.45323 0.00027298 602.3023871509394 22.613 0.88568 20.825 20.54 21.426 -1.7886 73 25 5 0 0 0 0.51622 1 3667 3667 23.79 1.1317 1 17308000 + 22463 15371 14801 14806 22275 22275 -0.004061842012333727 KEGFEGRH 8 Unmodified _KEGFEGRH_ 0 0 0 ENST00000474788.1_1_2:68615176-68615224:+|nuORF ENST00000474788.1_1_2:68615176-68615224:+|nuORF ENST00000474788.1_1_2:68615176-68615224:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2409362792969 2 480.238316 958.462078 -0.85305 -0.00040967 0.03497 1.6794E-05 -0.81808 -0.00039288 480.2380629624248 20.808 0.44646 19.087 18.873 19.319 -1.7211 28 12 4 0 0 0 0.69031 1 3241 3241 15.847 0 1 1920800 22464 10267 14802 14807 22276 22276 -0.018814405649095534 KEGFEGRH 8 Unmodified _KEGFEGRH_ 0 0 0 ENST00000474788.1_1_2:68615176-68615224:+|nuORF ENST00000474788.1_1_2:68615176-68615224:+|nuORF ENST00000474788.1_1_2:68615176-68615224:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.238316 958.462078 -0.22554 -0.00010831 -0.74501 -0.00035778 -0.97055 -0.00046609 480.23775815047725 20.477 0.49329 19.092 18.916 19.41 -1.3847 0.002587 -0.00037469 NaN 15.847 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2490400 22465 10267 14802 14807 -0.018814405649095534 KEGGPAFEA 9 Unmodified _KEGGPAFEA_ 0 0 0 nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ARHGAP21|p.I1365Rfs*23|1|0.25|ENSG00000107863|chr10:24591280-24591281|TA/-|frameshift_variant;ARHGAP21|p.K1443*|1|0.33|ENSG00000107863|chr10:24585962-24585963|-/A|frameshift_variant;ARHGAP21|p.D1617Tfs*32|1|0.1|ENSG00000107863|chr10:24585440-24585440|C/-|frameshift_variant;ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000476499.1_1_10:24918849-25010828:-|nuORF;ARHGAP21|p.T482Kfs*8|1|0.08|ENSG00000107863|chr10:24620450-24620451|-/AGGTATT|frameshift_variant;ARHGAP21|p.Q524Tfs*10|1|0.24|ENSG00000107863|chr10:24620325-24620326|-/T|frameshift_variant;ENST00000401578.2_1_6:80777785-80779717:-|nuORF nc|ENSG00000107863|Q5T5U3-3|ARHGAP21 nc|ENSG00000107863|Q5T5U3-3|ARHGAP21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7485046386719 2 453.2218 904.429047 0.37868 0.00017163 0.16094 7.2941E-05 0.53962 0.00024457 453.2218742428524 39.383 0.78886 39.383 38.856 39.644 0 41 22 3 0 0 0 0.19171 1 7324 7324 38.176 0.20157 1 2660300 22466 204 14803 14808 22277 22277 -0.026990674076273535 KEGKFRKT 8 Unmodified _KEGKFRKT_ 0 0 0 ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant;ARAP2|p.N1365Ifs*21|1|0.42|ENSG00000047365|chr4:36114232-36114232|T/-|frameshift_variant;ENSG00000047365|ENST00000303965|ARAP2;ENST00000508066.1_1_4:36162071-36231213:-|nuORF;ARAP2|p.L915Tfs*3|1|0.42|ENSG00000047365|chr4:36158739-36158740|-/T|frameshift_variant ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.0055847167969 3 331.866181 992.576714 -0.32498 -0.00010785 0.1782 5.9139E-05 -0.14678 -4.8711E-05 331.86621265166286 72.095 1.3642 68.557 68.048 69.412 -3.5385 111 38 5 0 0 0 1.0271 1 13584 13584 1.1933 0.9575 1 61317000 22467 191 14804 14809 22278 22278 0.0801286891704649 KEGKYTPP 8 Unmodified _KEGKYTPP_ 0 0 0 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24652099609375 2 460.247818 918.481082 0.35502 0.0001634 -2.6828 -0.0012348 -2.3278 -0.0010714 460.24664539940613 34.498 0.45621 32.282 32.055 32.511 -2.2158 20 12 2 0 0 0 0.49114 1 6028 6028 28.487 0 1 691300 22468 5925 14805 14810 22279 22279 0.01858096006139931 KEGNHDVLYE 10 Unmodified _KEGNHDVLYE_ 0 0 0 tr|U7T357|U7T357_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00403PE=3SV=1 tr|U7T357|U7T357_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00403PE=3SV=1 tr|U7T357|U7T357_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00403PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.283203125 2 602.28566 1202.55677 NaN NaN NaN NaN NaN NaN NaN 39.458 1 36.909 36.409 37.409 -2.5491 0 0 0 0.22588 1 7333 7333 5.7319 0 1 22469 26384 14806 14811 22280 22280 -0.036409716042498985 KEGNKGIVV 9 Unmodified _KEGNKGIVV_ 0 0 0 REV__HDLBP|p.F164V|1|0.07|ENSG00000115677|chr2:241256767-241256767|A/C|missense_variant REV__HDLBP|p.F164V|1|0.07|ENSG00000115677|chr2:241256767-241256767|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.190673828125 3 315.190553 942.549831 NaN NaN NaN NaN NaN NaN NaN 98.684 1 94.551 94.051 95.051 -4.1326 0 0 0 0.23508 1 19378 19378 1.1933 0 1 + 22470 23606 14807 14812 22281 22281 0.0762576030585933 KEGPREAE 8 Unmodified _KEGPREAE_ 0 0 0 REV__ENST00000580997.1_1_17:7468099-7469096:+|nuORF REV__ENST00000580997.1_1_17:7468099-7469096:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2301940917969 2 458.230156 914.445759 0.29872 0.00013688 -0.079651 -3.6499E-05 0.21907 0.00010038 458.23007197269425 29.628 0.52203 27.735 27.439 27.961 -1.8928 33 14 3 0 0 0 8448 1 5055 5055 2.643 0 1 6266200 + 22471 17476 14808 14813 22282 22282 -0.014885665216752386 KEGTETSY 8 Unmodified _KEGTETSY_ 0 0 0 REV__ENST00000537276.5_1_12:123416657-123444319:-|nuORF REV__ENST00000537276.5_1_12:123416657-123444319:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2235107421875 2 457.708722 913.402892 0.47174 0.00021592 -0.27055 -0.00012383 0.20118 9.2084E-05 457.70840700690155 31.776 0.17124 29.627 29.551 29.722 -2.1483 6 4 2 0 0 0 0.69031 1 5479 5479 15.847 2.3393 1 183230 + 22472 17046 14809 14814 22283 22283 -0.05727381369752038 KEGWERAGQCP 11 Unmodified _KEGWERAGQCP_ 0 0 0 SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant;SLX4|p.P1414Hfs*36|1|0.43|ENSG00000188827|chr16:3589397-3589397|G/-|frameshift_variant;nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4 SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7686767578125 2 630.793129 1259.5717 NaN NaN NaN NaN NaN NaN NaN 171.66 1 166.79 166.29 167.29 -4.873 0 0 0 0.22632 1 34030 34030 0.11104 0.067254 1 22473 7201 14810 14815 22284 22284 -0.04769803007866358 KEGWQKGP 8 Unmodified _KEGWQKGP_ 0 0 0 ENST00000589484.5_1_19:1417247-1428848:+|nuORF;DAZAP1|p.P257Rfs*78|5|0.45|ENSG00000071626|chr19:1430255-1430255|C/-|frameshift_variant;nc|ENSG00000071626|Q96EP5-2|DAZAP1;ENSG00000071626|ENST00000233078|DAZAP1 ENST00000589484.5_1_19:1417247-1428848:+|nuORF ENST00000589484.5_1_19:1417247-1428848:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25750732421875 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 24.437 1 22.583 22.083 23.083 -1.8534 0 0 0 0.21486 1 3973 3973 12.532 1.7076 1 22474 783 14811 14816 22285 22285 0.009566315832444161 KEHIWGDL 8 Unmodified _KEHIWGDL_ 0 0 0 REV__ENSG00000160460|ENST00000598249|SPTBN4 REV__ENSG00000160460|ENST00000598249|SPTBN4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.9996643066406 3 333.174903 996.50288 -0.34051 -0.00011345 0.24896 8.2949E-05 -0.091549 -3.0502E-05 333.1749691201782 70.263 0.66595 66.796 66.43 67.096 -3.467 40 18 3 0 0 0 1.0265 1 13270 13270 1.6526 0 1 2975700 + 22475 17421 14812 14817 22286 22286 0.004489007547022084 KEHIWGDL 8 Unmodified _KEHIWGDL_ 0 0 0 REV__ENSG00000160460|ENST00000598249|SPTBN4 REV__ENSG00000160460|ENST00000598249|SPTBN4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 333.174903 996.50288 0.38072 0.00012685 -0.4626 -0.00015413 -0.081884 -2.7282E-05 333.1746969907765 70.386 0.7438 66.806 66.45 67.193 -3.5798 0.0051394 -0.0003587 NaN 1.6526 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1494600 + 22476 17421 14812 14817 0.004489007547022084 KEHKNLAEA 9 Unmodified _KEHKNLAEA_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.51153564453125 3 347.189212 1038.54581 -0.93164 -0.00032346 0.80083 0.00027804 -0.13082 -4.5418E-05 347.18946439245514 13.865 0.13935 12.751 12.663 12.803 -1.1142 9 3 3 0 0 0 0.38759 1 2045 2045 24.882 19.013 1 990830 22477 4036 14813 14818 22287 22287 0.028076708121261618 KEHKNLAEA 9 Unmodified _KEHKNLAEA_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 347.189212 1038.54581 -0.67063 -0.00023284 0.84545 0.00029353 0.17482 6.0694E-05 347.18942829797606 13.867 0.13478 12.694 12.621 12.756 -1.173 -0.028808 3.1171E-05 NaN 24.882 7 3 3 NaN NaN NaN NaN 0 NaN NaN 0 212480 22478 4036 14813 14818 0.028076708121261618 KEHLIWLITL 10 Unmodified _KEHLIWLITL_ 0 0 0 ENST00000432471.6_2_8:38068046-38068208:+|nuORF;BAG4|p.G456Rfs*70|1|0.53|ENSG00000156735|chr8:38210476-38210477|-/A|frameshift_variant ENST00000432471.6_2_8:38068046-38068208:+|nuORF ENST00000432471.6_2_8:38068046-38068208:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1492614746094 4 317.195862 1264.75434 0.04366 1.3849E-05 0.67248 0.00021331 0.71614 0.00022716 317.1959697814128 106.31 1.0716 102.22 101.43 102.5 -4.0913 69 30 3 0 0 0 0.91149 1 20351 20351 0 0 1 1739300 22479 293 14814 14819 22288 22288 0.13255699396381715 KEHLSSKS 8 Unmodified _KEHLSSKS_ 0 0 0 SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant;SEMA6A|p.R918Efs*23|1|0.25|ENSG00000092421|chr5:116446955-116446956|-/T|frameshift_variant;SEMA6A|p.N990Mfs*8|1|0.1|ENSG00000092421|chr5:116446737-116446738|-/GTACA|frameshift_variant;SEMA6A|p.K1013Nfs*11|1|0.19|ENSG00000092421|chr5:116446670-116446670|G/-|frameshift_variant;SEMA6A|p.K1013Qfs*15|1|0.45|ENSG00000092421|chr5:116446669-116446670|-/G|frameshift_variant;ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2340393066406 2 458.248349 914.482145 0.11977 5.4886E-05 -0.39038 -0.00017889 -0.27061 -0.000124 458.24838300220637 39.8 0.59435 37.395 37.068 37.662 -2.4049 30 16 3 0 0 0 0.78482 1 7115 7115 25.399 0 1 762180 22480 1834 14815 14820 22289 22289 0.02148310375048368 KEHPEMAEA 9 Unmodified _KEHPEMAEA_ 0 0 0 ENST00000481424.5_1_7:99217223-99217685:+|nuORF;nc|ENSG00000197037|Q6NSZ9-4|ZSCAN25;nc|ENSG00000197037|Q6NSZ9-2|ZSCAN25;ENSG00000197037|ENST00000394152|ZSCAN25 ENST00000481424.5_1_7:99217223-99217685:+|nuORF ENST00000481424.5_1_7:99217223-99217685:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2588500976562 2 521.237124 1040.45969 0.12795 6.6693E-05 -0.77671 -0.00040485 -0.64876 -0.00033816 521.2370414905977 16.633 0.41082 16.633 16.369 16.78 0 18 11 3 0 0 0 0.67174 1 2601 2601 8.1555 0.24537 1 1616500 22481 7322 14816 14821 22290 22290 -0.058916570848850824 KEHPEMAEA 9 Unmodified _KEHPEMAEA_ 0 0 0 ENST00000481424.5_1_7:99217223-99217685:+|nuORF;nc|ENSG00000197037|Q6NSZ9-4|ZSCAN25;nc|ENSG00000197037|Q6NSZ9-2|ZSCAN25;ENSG00000197037|ENST00000394152|ZSCAN25 ENST00000481424.5_1_7:99217223-99217685:+|nuORF ENST00000481424.5_1_7:99217223-99217685:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.237124 1040.45969 -0.39108 -0.00020385 -0.20194 -0.00010526 -0.59302 -0.00030911 521.2372702067884 17.817 0.2421 16.506 16.371 16.614 -1.3109 0.0098909 -0.00012321 NaN 8.1555 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 981480 22482 7322 14816 14821 -0.058916570848850824 KEHPEMAEA 9 Unmodified _KEHPEMAEA_ 0 0 0 ENST00000481424.5_1_7:99217223-99217685:+|nuORF;nc|ENSG00000197037|Q6NSZ9-4|ZSCAN25;nc|ENSG00000197037|Q6NSZ9-2|ZSCAN25;ENSG00000197037|ENST00000394152|ZSCAN25 ENST00000481424.5_1_7:99217223-99217685:+|nuORF ENST00000481424.5_1_7:99217223-99217685:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.237124 1040.45969 -1.135 -0.00059159 0.88647 0.00046206 -0.24851 -0.00012953 521.237767305629 17.739 0.24282 16.467 16.385 16.627 -1.2722 -0.029775 0.0010114 NaN 8.1555 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 874210 22483 7322 14816 14821 -0.058916570848850824 KEHPEMAEA 9 Unmodified _KEHPEMAEA_ 0 0 0 ENST00000481424.5_1_7:99217223-99217685:+|nuORF;nc|ENSG00000197037|Q6NSZ9-4|ZSCAN25;nc|ENSG00000197037|Q6NSZ9-2|ZSCAN25;ENSG00000197037|ENST00000394152|ZSCAN25 ENST00000481424.5_1_7:99217223-99217685:+|nuORF ENST00000481424.5_1_7:99217223-99217685:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.237124 1040.45969 -1.1902 -0.00062037 0.54007 0.0002815 -0.65011 -0.00033886 521.2379298796254 17.894 0.28783 16.379 16.29 16.577 -1.5148 -0.11708 0.00065032 NaN 8.1555 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 567740 22484 7322 14816 14821 -0.058916570848850824 KEIDAYIVQA 10 Unmodified _KEIDAYIVQA_ 0 0 0 nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3153686523438 2 575.311146 1148.60774 0.17764 0.0001022 0.13437 7.7302E-05 0.31201 0.0001795 575.3111835120966 95.765 0.69356 95.765 95.456 96.149 0 56 19 4 0 0 0 0.092113 2 18773 18773;18793 63.227 34.146 1 11543000 22485 5910 14817 14822 22291;22292 22291 0.03937977440614304 KEIDAYIVQA 10 Unmodified _KEIDAYIVQA_ 0 0 0 nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.314453125 2 575.311146 1148.60774 0.011114 6.3941E-06 0.30532 0.00017565 0.31643 0.00018205 575.3113125216692 99.88 0.70246 95.748 95.405 96.108 -4.1326 57 19 4 0 0 0 0.075059 3 19631 19577;19622;19631 71.708 40.44 1 14378000 22486 5910 14817 14822 22293;22294;22295 22295 0.03937977440614304 KEIDAYIVQA 10 Unmodified _KEIDAYIVQA_ 0 0 0 nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3141479492188 2 575.311146 1148.60774 0.34715 0.00019972 -0.062946 -3.6213E-05 0.2842 0.0001635 575.3110789564678 100.05 0.70801 95.749 95.347 96.055 -4.297 57 20 4 0 0 0 0.075059 3 19134 19090;19122;19134 71.708 29.868 1 12423000 22487 5910 14817 14822 22296;22297;22298 22298 0.03937977440614304 KEIDAYIVQA 10 Unmodified _KEIDAYIVQA_ 0 0 0 nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3142700195312 2 575.311146 1148.60774 0.25429 0.00014629 0.022795 1.3114E-05 0.27708 0.00015941 575.3111446359096 99.701 0.76229 95.744 95.376 96.138 -3.9564 65 21 4 0 0 0 0.075059 3 19165 19115;19143;19165 71.708 42.626 1 15373000 22488 5910 14817 14822 22299;22300;22301 22301 0.03937977440614304 KEIEGIFHA 9 Unmodified _KEIEGIFHA_ 0 0 0 SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1 SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2799682617188 2 522.279649 1042.54475 0.55919 0.00029205 -0.041134 -2.1484E-05 0.51806 0.00027057 522.279529762119 78.014 0.91117 78.014 77.667 78.579 0 71 25 4 0 0 0 1.588E-56 4 15177 15128;15177;15223;15273 206.75 137.64 1 34866000 22489 5045 14818 14823 22302;22303;22304;22305 22303 0.025174564432290936 KEIEGIFHA 9 Unmodified _KEIEGIFHA_ 0 0 0 SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1 SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2796020507812 2 522.279649 1042.54475 -0.20436 -0.00010673 0.56035 0.00029266 0.35599 0.00018593 522.2799111017426 81.402 0.89493 77.845 77.341 78.236 -3.557 62 25 4 0 0 0 1.588E-56 3 15886 15840;15886;15934 206.75 137.64 1 25476000 22490 5045 14818 14823 22306;22307;22308 22307 0.025174564432290936 KEIEGIFHA 9 Unmodified _KEIEGIFHA_ 0 0 0 SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1 SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2796630859375 2 522.279649 1042.54475 -0.6723 -0.00035113 0.82625 0.00043154 0.15395 8.0407E-05 522.2800702417433 81.693 0.79202 77.854 77.474 78.266 -3.8392 51 22 3 0 0 0 1.9131E-33 4 15510 15456;15510;15530;15553 191.38 116.45 1 16686000 22491 5045 14818 14823 22309;22310;22311;22312 22310 0.025174564432290936 KEIEGIFHA 9 Unmodified _KEIEGIFHA_ 0 0 0 SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1 SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2796630859375 2 522.279649 1042.54475 -0.1241 -6.4815E-05 0.20703 0.00010813 0.08293 4.3313E-05 522.2797409540824 81.578 0.73305 77.89 77.523 78.256 -3.6879 44 20 3 0 0 0 1.9131E-33 4 15533 15488;15533;15576;15596 191.38 122.28 1 21167000 22492 5045 14818 14823 22313;22314;22315;22316 22314 0.025174564432290936 KEIEKDKREK 10 Unmodified _KEIEKDKREK_ 0 0 0 REV__tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1 REV__tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.9038391113281 3 434.917381 1301.73031 0.497 0.00021615 -0.58783 -0.00025566 -0.090835 -3.9506E-05 434.9170335786431 22.424 0.3405 20.95 20.73 21.07 -1.4742 20 9 3 0 0 0 0.75099 1 3830 3830 5.4027 0 1 1230500 + 22493 25357 14819 14824 22317 22317 0.09151814172014383 KEIEKDKREK 10 Unmodified _KEIEKDKREK_ 0 0 0 REV__tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1 REV__tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 434.917381 1301.73031 0.13627 5.9264E-05 -0.12719 -5.5316E-05 0.009077 3.9477E-06 434.9172914122028 20.809 0.38546 20.809 20.632 21.017 0 -0.057492 0.00012031 NaN 5.4027 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1182800 + 22494 25357 14819 14824 0.09151814172014383 KEIEKDKREK 10 Unmodified _KEIEKDKREK_ 0 0 0 REV__tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1 REV__tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 434.917381 1301.73031 0.497 0.00021615 -0.58783 -0.00025566 -0.090835 -3.9506E-05 434.9170335786431 22.424 0.3405 20.95 20.73 21.07 -1.4742 0.083688 -0.00048072 NaN 5.4027 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1230500 + 22495 25357 14819 14824 0.09151814172014383 KEIEKDKREK 10 Unmodified _KEIEKDKREK_ 0 0 0 REV__tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1 REV__tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 434.917381 1301.73031 -0.16159 -7.0277E-05 -0.059675 -2.5954E-05 -0.22126 -9.6231E-05 434.9173946348329 22.293 0.3175 20.84 20.697 21.014 -1.4535 -0.026196 0.0002084 NaN 5.4027 16 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1573300 + 22496 25357 14819 14824 0.09151814172014383 KEIGINAY 8 Unmodified _KEIGINAY_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7615966796875 2 454.247818 906.481082 -0.076492 -3.4746E-05 -1.896 -0.00086124 -1.9725 -0.00089598 454.247783462698 64.56 0.62907 61.563 61.29 61.919 -2.9975 37 17 3 0 0 0 0.69702 1 12510 12510 39.111 24.273 1 2296700 22497 6284 14820 14825 22318 22318 0.024100960061218757 KEIGINAY 8 Unmodified _KEIGINAY_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7532043457031 2 454.247818 906.481082 0.26422 0.00012002 -2.3571 -0.0010707 -2.0929 -0.0009507 454.2475474082225 64.847 1.0543 61.564 61.21 62.265 -3.2832 53 30 3 0 0 0 0.69702 1 12191 12191 20.454 14.149 1 1372900 22498 6284 14820 14825 22319 22319 0.024100960061218757 KEIQAPASA 9 Unmodified _KEIQAPASA_ 0 0 0 ENSG00000114767|ENST00000232888|RRP9 ENSG00000114767|ENST00000232888|RRP9 ENSG00000114767|ENST00000232888|RRP9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2336120605469 2 457.750724 913.486896 0.30661 0.00014035 0.68497 0.00031354 0.99158 0.0004539 457.7510035537264 24.427 0.68301 24.427 24.032 24.715 0 33 19 3 0 0 0 0.45972 1 4245 4245 8.1555 7.904 1 2305400 22499 2809 14821 14826 22320 22320 0.026691945177958587 KEIQAPASA 9 Unmodified _KEIQAPASA_ 0 0 0 ENSG00000114767|ENST00000232888|RRP9 ENSG00000114767|ENST00000232888|RRP9 ENSG00000114767|ENST00000232888|RRP9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2237854003906 2 457.750724 913.486896 1.0432 0.00047751 -0.60579 -0.0002773 0.43738 0.00020021 457.75040720972663 26.116 0.64823 24.334 23.937 24.586 -1.7821 40 18 3 0 0 0 6.9307E-11 1 4589 4589 145.13 4.4964 1 2866300 22500 2809 14821 14826 22321 22321 0.026691945177958587 KEIQAPASA 9 Unmodified _KEIQAPASA_ 0 0 0 ENSG00000114767|ENST00000232888|RRP9 ENSG00000114767|ENST00000232888|RRP9 ENSG00000114767|ENST00000232888|RRP9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2393798828125 2 457.750724 913.486896 0.061808 2.8293E-05 0.55368 0.00025345 0.61549 0.00028174 457.7508850634773 26.007 0.82844 24.372 23.788 24.616 -1.6347 48 23 3 0 0 0 2.219E-07 1 4272 4272 145.13 4.4964 1 3130000 22501 2809 14821 14826 22322 22322 0.026691945177958587 KEIQAPASA 9 Unmodified _KEIQAPASA_ 0 0 0 ENSG00000114767|ENST00000232888|RRP9 ENSG00000114767|ENST00000232888|RRP9 ENSG00000114767|ENST00000232888|RRP9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22381591796875 2 457.750724 913.486896 -0.018295 -8.3747E-06 0.37945 0.00017369 0.36115 0.00016532 457.75083410972843 26.195 0.86877 24.273 23.741 24.609 -1.9222 44 24 3 0 0 0 1.4163E-11 1 4336 4336 160.69 4.7359 1 2160900 22502 2809 14821 14826 22323 22323 0.026691945177958587 KEIRSVAA 8 Unmodified _KEIRSVAA_ 0 0 0 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2345275878906 2 437.261259 872.507966 0.1902 8.3167E-05 -0.11785 -5.1532E-05 0.072348 3.1635E-05 437.261065135803 23.532 0.38768 23.532 23.338 23.725 0 18 10 2 0 0 0 0.25522 2 4030 4030;4039 39.95 0 1 1491500 22503 12601 14822 14827 22324;22325 22324 0.06661204617319072 KEIRSVAA 8 Unmodified _KEIRSVAA_ 0 0 0 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 437.261259 872.507966 0.0049249 2.1535E-06 -0.0023477 -1.0265E-06 0.0025773 1.1269E-06 437.2612340357608 24.919 0.51152 23.385 23.027 23.538 -1.5342 -0.039934 0.00042951 NaN 39.95 24 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1373400 22504 12601 14822 14827 0.06661204617319072 KEIWLPPP 8 Unmodified _KEIWLPPP_ 0 0 0 ENSG00000213965|ENST00000397061|NUDT19 ENSG00000213965|ENST00000397061|NUDT19 ENSG00000213965|ENST00000397061|NUDT19 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2544860839844 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 30.488 1 28.596 28.096 29.096 -1.8928 0 0 0 0.21486 1 5229 5229 9.3474 0.75416 1 22505 7711 14823 14828 22326 22326 0.06371849799552365 KEKEEAVPF 9 Unmodified _KEKEEAVPF_ 0 0 0 REV__ENST00000581335.1_1_17:73224204-73224372:+|nuORF REV__ENST00000581335.1_1_17:73224204-73224372:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.212890625 3 359.525602 1075.55498 -0.24675 -8.8711E-05 0.35862 0.00012893 0.11188 4.0222E-05 359.52568688847765 65.076 1.4657 62.029 61.311 62.776 -3.047 128 42 4 0 0 0 0.4999 1 12620 12620 19.626 7.3853 1 31481000 + 22506 23241 14824 14829 22327 22327 0.02022019377795914 KEKEEFAVP 9 Unmodified _KEKEEFAVP_ 0 0 0 UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN1|p.E54D|1|0.28|ENSG00000135018|chr9:83707518-83707518|C/A|missense_variant;UBQLN2|p.I75Ffs*7|1|0.12|ENSG00000188021|chrX:56564096-56564096|A/-|frameshift_variant;nc|ENSG00000135018|Q9UMX0-4|UBQLN1 UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.510986328125 3 359.525602 1075.55498 0.2356 8.4706E-05 -0.08175 -2.9391E-05 0.15385 5.5315E-05 359.5255321648981 65.518 1.3984 62.06 61.333 62.731 -3.4581 116 39 4 0 0 0 0.10537 1 12186 12186 30.703 13.591 1 21360000 22507 7143 14825 14830 22328 22328 0.020220193778186513 KEKEEFAVP 9 Unmodified _KEKEEFAVP_ 0 0 0 UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;UBQLN1|p.E54D|1|0.28|ENSG00000135018|chr9:83707518-83707518|C/A|missense_variant;UBQLN2|p.I75Ffs*7|1|0.12|ENSG00000188021|chrX:56564096-56564096|A/-|frameshift_variant;nc|ENSG00000135018|Q9UMX0-4|UBQLN1 UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 359.525602 1075.55498 -0.55763 -0.00020048 0.56148 0.00020187 0.0038458 1.3827E-06 359.52582219180044 62.088 1.3124 62.088 61.597 62.909 0 0.076167 0.00034867 NaN 30.703 140 37 5 NaN NaN NaN NaN 0 NaN NaN 0 25444000 22508 7143 14825 14830 0.020220193778186513 KEKEPPAY 8 Unmodified _KEKEPPAY_ 0 0 0 REV__ENST00000411753.1_1_3:31495669-31495876:+|nuORF REV__ENST00000411753.1_1_3:31495669-31495876:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7838439941406 2 481.2531 960.491647 0.23899 0.00011502 -0.011537 -5.5524E-06 0.22746 0.00010946 481.25311439314635 65.101 1.3335 61.818 61.317 62.65 -3.2832 66 38 2 0 0 0 8448 1 12297 12297 14.838 0 1 3279000 + 22509 21427 14826 14831 22329 22329 0.009820786605587273 KEKIYSAER 9 Unmodified _KEKIYSAER_ 0 0 0 nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF;TXNRD1|p.G297D|1|0.25|ENSG00000198431|chr12:104319486-104319486|G/A|missense_variant nc|ENSG00000198431|Q16881-7|TXNRD1 nc|ENSG00000198431|Q16881-7|TXNRD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2087707519531 3 375.208384 1122.60332 NaN NaN NaN NaN NaN NaN NaN 42.729 1 42.729 42.229 43.229 0 0 0 0 0.19622 1 7997 7997 0.073264 0 1 22510 7453 14827 14832 22330 22330 0.04692513017721467 KEKKIREFI 9 Unmodified _KEKKIREFI_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000467707.1_1_9:128116999-128121864:+|nuORF;ENST00000474637.5_1_9:128108952-128125022:+|nuORF nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 595.8495483398438 2 595.866423 1189.71829 NaN NaN NaN NaN NaN NaN NaN 167.09 1 162.19 161.69 162.69 -4.8916 0 0 0 0.23508 1 32810 32810 4.3292 0.38484 1 22511 5610 14828 14833 22331 22331 0.13102242219497384 KEKSIFLVA 9 Unmodified _KEKSIFLVA_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.2382507324219 3 345.546337 1033.61718 -0.073067 -2.5248E-05 -0.016259 -5.6181E-06 -0.089325 -3.0866E-05 345.5462821243615 99.562 0.90664 99.562 99.161 100.07 0 74 25 4 0 0 0 0.1428 1 19601 19601 37.075 17.449 1 13086000 22512 3030 14829 14834 22332 22332 0.10171790516801593 KEKVSIYEA 9 Unmodified _KEKVSIYEA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2695922851562 2 533.792589 1065.57063 0.19983 0.00010667 0.083555 4.4601E-05 0.28339 0.00015127 533.7925855238799 37.811 0.59777 37.811 37.508 38.106 0 26 16 2 0 0 0 0.12694 1 6986 6986 59.368 26.583 1 4398100 22513 6567 14830 14835 22333 22333 0.04046305894848956 KEKVSIYEA 9 Unmodified _KEKVSIYEA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2671508789062 2 533.792589 1065.57063 0.3488 0.00018619 0.27844 0.00014863 0.62725 0.00033482 533.7926496239326 40.246 0.53415 37.706 37.429 37.963 -2.5398 28 14 3 0 0 0 0.1155 1 7198 7198 71.708 42.626 1 4823800 22514 6567 14830 14835 22334 22334 0.04046305894848956 KELEANVL 8 Unmodified _KELEANVL_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.238525390625 2 458.260925 914.507297 0.11507 5.2732E-05 -0.054785 -2.5106E-05 0.060284 2.7626E-05 458.2608387728874 71.119 0.68578 71.119 70.767 71.453 0 39 19 3 0 0 0 0.060682 1 13786 13786 85.272 3.6589 1 6785700 22515 2764 14831 14836 22335 22335 0.04662365177614447 KELEANVL 8 Unmodified _KELEANVL_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23834228515625 2 458.260925 914.507297 -0.17999 -8.2484E-05 0.4555 0.00020874 0.27551 0.00012625 458.2610577658179 74.111 0.72704 70.747 70.436 71.163 -3.3643 48 20 3 0 0 0 0.081241 1 14431 14431 74.929 0.50624 1 6453600 22516 2764 14831 14836 22336 22336 0.04662365177614447 KELEANVL 8 Unmodified _KELEANVL_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.239013671875 2 458.260925 914.507297 0.34034 0.00015597 -0.14964 -6.8572E-05 0.19071 8.7395E-05 458.2608144169379 74.502 0.80118 70.908 70.537 71.338 -3.594 48 22 3 0 0 0 0.060682 2 14142 14142;14153 85.272 3.6589 1 5553100 22517 2764 14831 14836 22337;22338 22337 0.04662365177614447 KELEANVL 8 Unmodified _KELEANVL_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.260925 914.507297 0.1251 5.7326E-05 0.052526 2.4071E-05 0.17762 8.1397E-05 458.26089685215385 74.517 0.83511 70.84 70.482 71.318 -3.6764 -0.063236 2.2824E-06 NaN 85.272 50 23 3 NaN NaN NaN NaN 0 NaN NaN 0 6051800 22518 2764 14831 14836 0.04662365177614447 KELEFSNL 8 Unmodified _KELEFSNL_ 0 0 0 nc|ENSG00000147481|Q9NSN8-2|SNTG1;ENSG00000147481|ENST00000642720|SNTG1 nc|ENSG00000147481|Q9NSN8-2|SNTG1 nc|ENSG00000147481|Q9NSN8-2|SNTG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2598876953125 2 490.258382 978.502212 0.14743 7.2278E-05 -1.0595 -0.00051941 -0.91204 -0.00044713 490.25830794704655 19.051 1.2407 19.051 18.687 19.928 0 83 35 4 0 0 0 0.30441 1 3077 3077 36.506 4.2007 1 45589000 22519 4705 14832 14837 22339 22339 0.012100613150096251 KELEFSNL 8 Unmodified _KELEFSNL_ 0 0 0 nc|ENSG00000147481|Q9NSN8-2|SNTG1;ENSG00000147481|ENST00000642720|SNTG1 nc|ENSG00000147481|Q9NSN8-2|SNTG1 nc|ENSG00000147481|Q9NSN8-2|SNTG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2584228515625 2 490.258382 978.502212 0.43652 0.00021401 -1.5858 -0.00077747 -1.1493 -0.00056347 490.2582068536789 20.599 0.84386 19.202 18.76 19.603 -1.3966 65 23 4 0 0 0 0.095609 1 3474 3474 63.961 7.7835 1 27982000 22520 4705 14832 14837 22340 22340 0.012100613150096251 KELEFSNL 8 Unmodified _KELEFSNL_ 0 0 0 nc|ENSG00000147481|Q9NSN8-2|SNTG1;ENSG00000147481|ENST00000642720|SNTG1 nc|ENSG00000147481|Q9NSN8-2|SNTG1 nc|ENSG00000147481|Q9NSN8-2|SNTG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25830078125 2 490.258382 978.502212 -0.15144 -7.4247E-05 -0.82983 -0.00040683 -0.98127 -0.00048108 490.2585067931573 20.464 0.70183 19.079 18.742 19.444 -1.3847 58 19 4 0 0 0 0.069961 2 3165 3165;3215 69.105 3.8699 1 30485000 22521 4705 14832 14837 22341;22342 22341 0.012100613150096251 KELEFSNL 8 Unmodified _KELEFSNL_ 0 0 0 nc|ENSG00000147481|Q9NSN8-2|SNTG1;ENSG00000147481|ENST00000642720|SNTG1 nc|ENSG00000147481|Q9NSN8-2|SNTG1 nc|ENSG00000147481|Q9NSN8-2|SNTG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25836181640625 2 490.258382 978.502212 -1.05 -0.00051475 0.43954 0.00021549 -0.61042 -0.00029926 490.25895561305947 20.783 0.7667 19.062 18.695 19.462 -1.7211 63 21 4 0 0 0 0.069961 2 3251 3199;3251 69.105 3.8969 1 27421000 22522 4705 14832 14837 22343;22344 22344 0.012100613150096251 KELEISWG 8 Unmodified _KELEISWG_ 0 0 0 SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant;SCYL1|p.G159Afs*110|1|0.37|ENSG00000142186|chr11:65526220-65526220|G/-|frameshift_variant;nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1 SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2529602050781 2 481.2531 960.491647 -0.046056 -2.2165E-05 0.089283 4.2968E-05 0.043227 2.0803E-05 481.2529712881447 19.05 0.76262 19.05 18.652 19.415 0 38 21 3 0 0 0 0.079177 1 3103 3103 81.613 26.84 1 5695900 22523 25647 14833 14838 22345 22345 0.009820786605814646 KELEISWG 8 Unmodified _KELEISWG_ 0 0 0 SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant;SCYL1|p.G159Afs*110|1|0.37|ENSG00000142186|chr11:65526220-65526220|G/-|frameshift_variant;nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1 SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25274658203125 2 481.2531 960.491647 0.3662 0.00017624 0.18235 8.7755E-05 0.54855 0.00026399 481.25304268097847 20.614 0.39045 19.218 19.072 19.463 -1.3966 22 10 3 0 0 0 0.10891 3 3441 3441;3479;3488 61.357 17.499 1 3236700 22524 25647 14833 14838 22346;22347;22348 22346 0.009820786605814646 KELEISWG 8 Unmodified _KELEISWG_ 0 0 0 SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant;SCYL1|p.G159Afs*110|1|0.37|ENSG00000142186|chr11:65526220-65526220|G/-|frameshift_variant;nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1 SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.253173828125 2 481.2531 960.491647 -0.21289 -0.00010245 0.74467 0.00035837 0.53178 0.00025592 481.2533548549371 20.464 0.49329 19.079 18.916 19.41 -1.3847 29 13 3 0 0 0 0.079177 1 3173 3173 81.613 9.6908 1 3452800 22525 25647 14833 14838 22349 22349 0.009820786605814646 KELEISWG 8 Unmodified _KELEISWG_ 0 0 0 SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant;SCYL1|p.G159Afs*110|1|0.37|ENSG00000142186|chr11:65526220-65526220|G/-|frameshift_variant;nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1 SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2532958984375 2 481.2531 960.491647 -0.87425 -0.00042074 0.98823 0.00047559 0.11398 5.4852E-05 481.2535485202467 20.781 0.55335 19.06 18.836 19.39 -1.7211 29 15 3 0 0 0 0.079177 2 3205 3205;3206 81.613 22.934 1 3892500 22526 25647 14833 14838 22350;22351 22350 0.009820786605814646 KELEKEFLS 9 Unmodified _KELEKEFLS_ 0 0 0 REV__ENSG00000170745|ENST00000304101|KCNS3 REV__ENSG00000170745|ENST00000304101|KCNS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2071838378906 3 374.87289 1121.59684 0.35441 0.00013286 -0.28466 -0.00010671 0.069747 2.6146E-05 374.8727095064825 71.018 0.48685 67.438 67.052 67.538 -3.5798 23 13 2 0 0 0 0.48437 1 13355 13355 20.581 4.0151 1 1191100 + 22527 18177 14834 14839 22352 22352 0.04090575066334168 KELFNLES 8 Unmodified _KELFNLES_ 0 0 0 ENST00000486363.1_1_21:33641984-33642827:-|nuORF;ENSG00000159055|ENST00000290130|MIS18A ENST00000486363.1_1_21:33641984-33642827:-|nuORF ENST00000486363.1_1_21:33641984-33642827:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2584533691406 2 490.258382 978.502212 0.14743 7.2278E-05 -1.0595 -0.00051941 -0.91204 -0.00044713 490.25830794704655 19.051 1.2407 19.051 18.687 19.928 0 83 35 4 0 0 0 8448 1 3164 3164 14.838 0 1 45589000 22528 5184 14835 14840 22353 22353 0.012100613149982564 KELHQPQDRYQ 11 Unmodified _KELHQPQDRYQ_ 0 0 0 REV__PLEKHA7|p.F802Sfs*21|2|0.18|ENSG00000166689|chr11:16800978-16800978|A/-|frameshift_variant REV__PLEKHA7|p.F802Sfs*21|2|0.18|ENSG00000166689|chr11:16800978-16800978|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2448425292969 3 481.244268 1440.71098 NaN NaN NaN NaN NaN NaN NaN 28.915 1 26.919 26.419 27.419 -1.9962 0 0 0 0.22632 1 4899 4899 0.172 0 1 + 22529 17865 14836 14841 22354 22354 0.008248578811389962 KELIFLRQS 9 Unmodified _KELIFLRQS_ 0 0 0 REV__ENST00000509630.1_1_4:145573840-145606800:+|nuORF REV__ENST00000509630.1_1_4:145573840-145606800:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 378.57672119140625 3 378.560758 1132.66044 -0.33308 -0.00012609 0.06228 2.3577E-05 -0.2708 -0.00010251 378.5607859092798 70.587 0.53197 67.12 66.847 67.379 -3.467 22 14 2 0 0 0 0.27464 1 13416 13416 43.982 26.869 1 1397200 + 22530 17653 14837 14842 22355 22355 0.09941980294070163 KELIFLRQS 9 Unmodified _KELIFLRQS_ 0 0 0 REV__ENST00000509630.1_1_4:145573840-145606800:+|nuORF REV__ENST00000509630.1_1_4:145573840-145606800:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 378.560758 1132.66044 -0.47531 -0.00017993 0.28504 0.00010791 -0.19026 -7.2026E-05 378.56089826843174 67.133 0.42492 67.133 66.978 67.403 0 0.002955 0.00042359 NaN 43.982 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1344900 + 22531 17653 14837 14842 0.09941980294070163 KELIFLRQS 9 Unmodified _KELIFLRQS_ 0 0 0 REV__ENST00000509630.1_1_4:145573840-145606800:+|nuORF REV__ENST00000509630.1_1_4:145573840-145606800:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 378.560758 1132.66044 -0.33601 -0.0001272 0.043091 1.6313E-05 -0.29292 -0.00011089 378.5607416995572 70.34 0.56403 67.091 66.825 67.389 -3.2492 -0.039855 0.00014881 NaN 43.982 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1977300 + 22532 17653 14837 14842 0.09941980294070163 KELIFLRQS 9 Unmodified _KELIFLRQS_ 0 0 0 REV__ENST00000509630.1_1_4:145573840-145606800:+|nuORF REV__ENST00000509630.1_1_4:145573840-145606800:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 378.560758 1132.66044 0.3617 0.00013692 -0.56549 -0.00021407 -0.2038 -7.715E-05 378.56056623724174 70.758 0.45637 67.178 66.911 67.367 -3.5798 0.047358 -0.00054235 NaN 43.982 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1384100 + 22533 17653 14837 14842 0.09941980294070163 KELKKIIRLC 10 Unmodified _KELKKIIRLC_ 0 0 0 REV__tr|U7SV84|U7SV84_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01167PE=4SV=1 REV__tr|U7SV84|U7SV84_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01167PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7517700195312 2 622.399576 1242.7846 0.40779 0.00025381 2.6912 0.001675 3.099 0.0019288 622.903005297136 162.21 0.13762 162.21 162.13 162.27 0 5 3 2 0 0 0 0.91149 1 32603 32603 0.45834 0 1 8064700 + 22534 25188 14838 14843 22356 22356 0.17291734789910151 KELLGFVNY 9 Unmodified _KELLGFVNY_ 0 0 0 ENST00000474368.1_1_21:42773880-42775423:+|nuORF;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2 ENST00000474368.1_1_21:42773880-42775423:+|nuORF ENST00000474368.1_1_21:42773880-42775423:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2772827148438 2 541.797675 1081.5808 0.49496 0.00026817 -1.2416 -0.00067272 -0.74668 -0.00040455 541.7986244566858 156.48 0.28806 151.21 151.09 151.37 -5.2712 10 7 2 0 0 0 0.63075 1 30337 30337 0.12781 0.11455 1 1133700 22535 6850 14839 14844 22357 22357 0.043269136200933644 KELLGSFDA 9 Unmodified _KELLGSFDA_ 0 0 0 REV__AFP|p.E594Mfs*10|1|0.05|ENSG00000081051|chr4:73453890-73453891|-/AATGCTATTTT|frameshift_variant REV__AFP|p.E594Mfs*10|1|0.05|ENSG00000081051|chr4:73453890-73453891|-/AATGCTATTTT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2584228515625 2 490.258382 978.502212 0.14743 7.2278E-05 -1.0595 -0.00051941 -0.91204 -0.00044713 490.25830794704655 19.051 1.2407 19.051 18.687 19.928 0 83 35 4 0 0 0 0.09885 1 3120 3120 56.177 0.6743 1 45589000 + + 22536 12975 14840 14845 22358 22358 0.012100613149982564 KELMLESL 8 Unmodified _KELMLESL_ 0 0 0 REV__ENST00000425115.1_1_3:44751367-44751973:-|nuORF REV__ENST00000425115.1_1_3:44751367-44751973:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7691955566406 2 481.764986 961.515419 NaN NaN NaN NaN NaN NaN NaN 60.566 1 57.343 56.843 57.843 -3.2237 0 0 0 0.21039 1 11329 11329 16.942 1.0951 1 + 22537 18205 14841 14846 22359 22359 0.033121761027246066 KELRQPGK 8 Unmodified _KELRQPGK_ 0 0 0 REV__DOK4|p.Y45H|1|0.15|ENSG00000125170|chr16:57475891-57475891|A/G|missense_variant REV__DOK4|p.Y45H|1|0.15|ENSG00000125170|chr16:57475891-57475891|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.1948547363281 3 319.194298 954.561064 NaN NaN NaN NaN NaN NaN NaN 90.902 1 90.902 90.402 91.402 0 0 0 0 0.21486 1 17763 17763 1.6526 0.69035 1 + 22538 13741 14842 14847 22360 22360 0.08196582399989438 KELRQPGK 8 Unmodified _KELRQPGK_ 0 0 0 REV__DOK4|p.Y45H|1|0.15|ENSG00000125170|chr16:57475891-57475891|A/G|missense_variant REV__DOK4|p.Y45H|1|0.15|ENSG00000125170|chr16:57475891-57475891|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.19451904296875 3 319.194298 954.561064 NaN NaN NaN NaN NaN NaN NaN 94.573 1 90.583 90.083 91.083 -3.9907 0 0 0 0.21486 1 18534 18534 1.6526 0.69035 1 + 22539 13741 14842 14847 22361 22361 0.08196582399989438 KELSCSSNL 9 Unmodified _KELSCSSNL_ 0 0 0 REV__ENSG00000179213|ENST00000601727|SIGLECL1 REV__ENSG00000179213|ENST00000601727|SIGLECL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2757568359375 2 490.739499 979.464446 0.14609 7.1694E-05 -0.16096 -7.8992E-05 -0.01487 -7.2973E-06 490.73984267092374 97.223 0.45197 93.125 92.907 93.359 -4.0978 15 12 2 0 0 0 0.84208 1 19061 19061 11.64 0 1 956980 + 22540 18646 14843 14848 22362 22362 -0.026107729421141812 KELSCSSNL 9 Unmodified _KELSCSSNL_ 0 0 0 REV__ENSG00000179213|ENST00000601727|SIGLECL1 REV__ENSG00000179213|ENST00000601727|SIGLECL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 490.739499 979.464446 -0.24711 -0.00012127 -0.070115 -3.4408E-05 -0.31723 -0.00015568 490.73986117757073 97.164 0.27211 93.244 93.091 93.363 -3.9194 0.059778 3.6015E-05 NaN 11.64 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 879650 + 22541 18646 14843 14848 -0.026107729421141812 KELSLEAE 8 Unmodified _KELSLEAE_ 0 0 0 nc|nan|Q8ND61-2|C3orf20;ENSG00000131379|ENST00000253697|C3orf20 nc|nan|Q8ND61-2|C3orf20 nc|nan|Q8ND61-2|C3orf20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53179931640625 2 459.742565 917.470577 0.23315 0.00010719 1.8239 0.00083854 2.0571 0.00094573 459.7430598305208 35.034 0.44675 35.034 34.791 35.238 0 20 12 4 0 0 0 8448 1 6410 6410 1.7423 0 1 977960 22542 3673 14844 14849 22363 22363 0.008540685610455512 KELTKKHF 8 Unmodified _KELTKKHF_ 0 0 0 REV__ENSG00000166004|ENST00000325212|CEP295 REV__ENSG00000166004|ENST00000325212|CEP295 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.20684814453125 3 344.206315 1029.59712 NaN NaN NaN NaN NaN NaN NaN 66.425 1 66.425 65.925 66.925 0 0 0 0 0.21486 1 12830 12830 1.8442 0 1 + 22543 17816 14845 14850 22364 22364 0.08350039576839663 KEMEQKKET 9 Unmodified _KEMEQKKET_ 0 0 0 REV__HMGN5|p.G179Vfs*48|2|0.49|ENSG00000198157|chrX:81114964-81114964|T/-|frameshift_variant REV__HMGN5|p.G179Vfs*48|2|0.49|ENSG00000198157|chrX:81114964-81114964|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3272094726562 2 575.792263 1149.56997 0.52018 0.00029951 -2.9853 -0.0017189 -2.4651 -0.0014194 576.2924512706056 124.02 0.74483 119.29 118.85 119.6 -4.731 31 20 2 0 0 0 0.58804 1 23742 23742 13.906 0 1 1576000 + 22544 23636 14846 14851 22365 22365 0.0011714318350186659 KEMLETQVA 9 Oxidation (M) _KEM(Oxidation (M))LETQVA_ KEM(1)LETQVA KEM(42)LETQVA 0 0 1 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27001953125 2 532.768257 1063.52196 0.51188 0.00027272 -0.53718 -0.00028619 -0.025292 -1.3475E-05 532.7678807952265 36.593 0.9304 34.245 33.757 34.687 -2.3479 58 26 3 0 0 0 0.071123 1 6509 6509 42.232 30.663 1 2993800 22545 3001 14847 14852 22366 22366 41 -0.007259307365302448 KEMLETQVA 9 Oxidation (M) _KEM(Oxidation (M))LETQVA_ KEM(1)LETQVA KEM(44)LETQVA 0 0 1 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.268310546875 2 532.768257 1063.52196 0.32129 0.00017117 -0.40414 -0.00021531 -0.082853 -4.4141E-05 532.768017663903 36.528 1.0972 34.19 33.677 34.774 -2.3375 78 30 3 0 0 0 0.15274 2 6388 6388;6400 43.772 13.136 1 3154700 22546 3001 14847 14852 22367;22368 22367 41 -0.007259307365302448 KEMMCFPDFP 10 Unmodified _KEMMCFPDFP_ 0 0 0 FMO3|p.K416Sfs*72|1|0.39|ENSG00000007933|chr1:171116267-171116267|A/-|frameshift_variant;ENSG00000007933|ENST00000367755|FMO3;FMO3|p.K300Yfs*8|1|0.06|ENSG00000007933|chr1:171114076-171114077|-/TATAAATTGAT|frameshift_variant;nc|ENSG00000293458|O60774|FMO6P FMO3|p.K416Sfs*72|1|0.39|ENSG00000007933|chr1:171116267-171116267|A/-|frameshift_variant FMO3|p.K416Sfs*72|1|0.39|ENSG00000007933|chr1:171116267-171116267|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76806640625 2 622.761063 1243.50757 NaN NaN NaN NaN NaN NaN NaN 64.013 1 60.756 60.256 61.256 -3.2567 0 0 0 0.22588 1 12012 12012 5.7319 1.203 1 22547 1030 14848 14853 22369 22369 -0.10444042480708049 KEMMCFPDFP 10 Unmodified _KEMMCFPDFP_ 0 0 0 FMO3|p.K416Sfs*72|1|0.39|ENSG00000007933|chr1:171116267-171116267|A/-|frameshift_variant;ENSG00000007933|ENST00000367755|FMO3;FMO3|p.K300Yfs*8|1|0.06|ENSG00000007933|chr1:171114076-171114077|-/TATAAATTGAT|frameshift_variant;nc|ENSG00000293458|O60774|FMO6P FMO3|p.K416Sfs*72|1|0.39|ENSG00000007933|chr1:171116267-171116267|A/-|frameshift_variant FMO3|p.K416Sfs*72|1|0.39|ENSG00000007933|chr1:171116267-171116267|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7576904296875 2 622.761063 1243.50757 NaN NaN NaN NaN NaN NaN NaN 167.59 1 162.69 162.19 163.19 -4.8916 0 0 0 2.8426 1 32978 32978 1.0651 1.0214 1 22548 1030 14848 14853 22370 22370 -0.10444042480708049 KEMMVAMRR 9 Unmodified _KEMMVAMRR_ 0 0 0 ENSG00000184140|ENST00000328882|OR4F6 ENSG00000184140|ENST00000328882|OR4F6 ENSG00000184140|ENST00000328882|OR4F6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3309326171875 2 576.295939 1150.57732 NaN NaN NaN NaN NaN NaN NaN 151.93 1 147.18 146.68 147.68 -4.7523 0 0 0 0.23508 1 30189 30189 10.074 2.465 1 22549 6890 14849 14854 22371 22371 0.008058809785779886 KEMNQDNSI 9 Unmodified _KEMNQDNSI_ 0 0 0 REV__TMPRSS15|p.N484Tfs*4|1|0.28|ENSG00000154646|chr21:18341526-18341526|T/-|frameshift_variant REV__TMPRSS15|p.N484Tfs*4|1|0.28|ENSG00000154646|chr21:18341526-18341526|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20172119140625 3 360.165968 1077.47607 NaN NaN NaN NaN NaN NaN NaN 123.5 1 118.92 118.42 119.42 -4.5757 0 0 0 0.23508 1 24342 24342 11.495 2.5185 1 + 22550 17189 14850 14855 22372 22372 -0.059565759187762524 KEMQFSKQTIA 11 Unmodified _KEMQFSKQTIA_ 0 0 0 nc|ENSG00000251503|Q8N2Z9-3|CENPS;ENSG00000175279|ENST00000309048|CENPS;nc|ENSG00000251503|Q8N2Z9-2|CENPS nc|ENSG00000251503|Q8N2Z9-3|CENPS nc|ENSG00000251503|Q8N2Z9-3|CENPS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2184753417969 3 437.56395 1309.67002 -0.35572 -0.00015565 0.2555 0.0001118 -0.10022 -4.3852E-05 437.56406555312634 53.664 0.55919 50.781 50.453 51.013 -2.8837 45 15 4 0 0 0 0.32296 1 10208 10208 45.603 35.452 1 4112400 22551 12626 14851 14856 22373 22373 0.027573805173233268 KEMQFSKQTIA 11 Unmodified _KEMQFSKQTIA_ 0 0 0 nc|ENSG00000251503|Q8N2Z9-3|CENPS;ENSG00000175279|ENST00000309048|CENPS;nc|ENSG00000251503|Q8N2Z9-2|CENPS nc|ENSG00000251503|Q8N2Z9-3|CENPS nc|ENSG00000251503|Q8N2Z9-3|CENPS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 438.5659484863281 3 437.56395 1309.67002 0.016786 7.345E-06 -0.17373 -7.6016E-05 -0.15694 -6.8671E-05 437.8981437201337 54.012 0.55438 50.876 50.49 51.044 -3.1352 37 15 4 0 0 0 0.22786 1 9930 9930 27.536 19.091 1 3198600 22552 12626 14851 14856 22374 22374 0.027573805173233268 KEMQFSKQTIA 11 Unmodified _KEMQFSKQTIA_ 0 0 0 nc|ENSG00000251503|Q8N2Z9-3|CENPS;ENSG00000175279|ENST00000309048|CENPS;nc|ENSG00000251503|Q8N2Z9-2|CENPS nc|ENSG00000251503|Q8N2Z9-3|CENPS nc|ENSG00000251503|Q8N2Z9-3|CENPS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2279052734375 3 437.56395 1309.67002 -0.21351 -9.3426E-05 0.0058966 2.5801E-06 -0.20762 -9.0846E-05 437.5640230921456 54.057 0.63312 50.92 50.501 51.134 -3.1377 39 17 4 0 0 0 0.88374 1 9953 9953 8.4443 8.4005 1 3592500 22553 12626 14851 14856 22375 22375 0.027573805173233268 KEMSVYEA 8 Unmodified _KEMSVYEA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7234191894531 2 478.723318 955.432083 0.12699 6.0791E-05 0.1679 8.0378E-05 0.29489 0.00014117 478.72333407830916 41.54 0.90764 41.54 40.92 41.828 0 58 25 3 0 0 0 0.042072 3 7738 7694;7738;7788 88.954 46.859 1 6870400 22554 6567 14852 14857 22376;22377;22378 22377 -0.04741560345121343 KEMSVYEA 8 Unmodified _KEMSVYEA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7232971191406 2 478.723318 955.432083 -0.034879 -1.6697E-05 0.12542 6.0041E-05 0.09054 4.3343E-05 478.7233264358322 44.356 0.97188 41.566 40.947 41.919 -2.79 66 27 3 0 0 0 0.042072 4 8332 8287;8295;8332;8379 88.954 46.859 1 12101000 22555 6567 14852 14857 22379;22380;22381;22382 22381 -0.04741560345121343 KEMSVYEA 8 Unmodified _KEMSVYEA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.723388671875 2 478.723318 955.432083 -0.037037 -1.773E-05 0.26697 0.00012781 0.22994 0.00011008 478.72338923633345 44.323 0.9645 41.557 40.94 41.905 -2.7661 66 27 3 0 0 0 0.042072 5 8015 7967;7974;8015;8035;8064 88.954 46.859 1 8341400 22556 6567 14852 14857 22383;22384;22385;22386;22387 22385 -0.04741560345121343 KEMSVYEA 8 Unmodified _KEMSVYEA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7234802246094 2 478.723318 955.432083 -0.082093 -3.93E-05 0.33121 0.00015856 0.24911 0.00011926 478.72343598583376 44.336 0.90593 41.588 41.011 41.917 -2.7475 66 25 3 0 0 0 0.042072 5 7982 7942;7982;8011;8023;8072 88.954 48.465 1 7269000 22557 6567 14852 14857 22388;22389;22390;22391;22392 22389 -0.04741560345121343 KENKEKAP 8 Unmodified _KENKEKAP_ 0 0 0 REV__ENST00000477306.1_1_1:156713442-156714029:-|nuORF REV__ENST00000477306.1_1_1:156713442-156714029:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.18023681640625 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 98.957 1 95 94.5 95.5 -3.9564 0 0 0 0.21486 1 18994 18994 3.9444 0.3479 1 + 22558 16713 14853 14858 22393 22393 0.03988883409135724 KENSHFFVA 9 Unmodified _KENSHFFVA_ 0 0 0 TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013244628906 3 360.182058 1077.52434 -0.56144 -0.00020222 0.5869 0.00021139 0.025452 9.1672E-06 360.18220893199094 64.253 0.55625 64.253 63.959 64.515 0 48 15 4 0 0 0 0.20546 1 12401 12401 37.075 27.31 1 32785000 22559 3328 14854 14859 22394 22394 -0.011317142165808036 KENSHFFVA 9 Unmodified _KENSHFFVA_ 0 0 0 TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2012023925781 3 360.182058 1077.52434 -0.36451 -0.00013129 0.3884 0.0001399 0.023889 8.6042E-06 360.18213682107296 67.38 0.87086 64.053 63.718 64.589 -3.3268 77 24 5 0 0 0 0.79986 1 12665 12665 13.615 8.7179 1 30035000 22560 3328 14854 14859 22395 22395 -0.011317142165808036 KENSHFFVA 9 Unmodified _KENSHFFVA_ 0 0 0 TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 360.182058 1077.52434 0.30381 0.00010943 -0.32009 -0.00011529 -0.016283 -5.865E-06 360.1818803525032 67.625 0.59825 64.129 63.748 64.346 -3.4965 0.0013567 -0.00056881 NaN 37.075 56 16 4 NaN NaN NaN NaN 0 NaN NaN 0 24465000 22561 3328 14854 14859 -0.011317142165808036 KEPCGEPR 8 Unmodified _KEPCGEPR_ 0 0 0 REV__ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant REV__ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.222412109375 2 458.221277 914.428001 NaN NaN NaN NaN NaN NaN NaN 172.85 1 168.06 167.56 168.56 -4.7898 0 0 0 0.21486 1 35232 35232 10.074 0.72649 1 + 22562 12907 14855 14860 22396 22396 -0.03263605048164209 KEPEQIAF 8 Unmodified _KEPEQIAF_ 0 0 0 ENST00000480486.1_1_21:37758395-37770302:+|nuORF;ENSG00000159259|ENST00000314103|CHAF1B ENST00000480486.1_1_21:37758395-37770302:+|nuORF ENST00000480486.1_1_21:37758395-37770302:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2362365722656 2 481.2531 960.491647 -0.046056 -2.2165E-05 0.089283 4.2968E-05 0.043227 2.0803E-05 481.2529712881447 19.05 0.76262 19.05 18.652 19.415 0 38 21 3 0 0 0 0.71273 1 3078 3078 12.532 0.89125 1 5695900 22563 5198 14856 14861 22397 22397 0.00982078660570096 KEPLKVIDK 9 Unmodified _KEPLKVIDK_ 0 0 0 REV__ENSG00000145569|ENST00000274217|OTULINL REV__ENSG00000145569|ENST00000274217|OTULINL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5596923828125 3 357.225375 1068.6543 0.69805 0.00024936 3.9183 0.0013997 4.6163 0.0016491 357.5613569519026 27.163 0.5355 25.38 25.202 25.737 -1.7821 22 14 2 0 0 0 0.13707 1 4788 4788 46.022 3.1871 1 7512300 + 22564 16841 14857 14862 22398 22398 0.12271462062540195 KEPPFFQPP 9 Unmodified _KEPPFFQPP_ 0 0 0 ENSG00000284526|ENST00000640006|unknown ENSG00000284526|ENST00000640006|unknown ENSG00000284526|ENST00000640006|unknown MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7839965820312 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 16.314 1 16.314 15.814 16.814 0 0 0 0 0.23508 1 2530 2530 7.9102 0.62092 1 22565 8064 14858 14863 22399 22399 0.01522644448596111 KEPQDWPQ 8 Unmodified _KEPQDWPQ_ 0 0 0 ENSG00000198934|ENST00000361470|MAGEE1 ENSG00000198934|ENST00000361470|MAGEE1 ENSG00000198934|ENST00000361470|MAGEE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.15869140625 3 343.166296 1026.47706 NaN NaN NaN NaN NaN NaN NaN 99.128 1 99.128 98.628 99.628 0 0 0 0 0.21486 1 19439 19439 1.6526 0.45928 1 22566 7529 14859 14864 22400 22400 -0.03511993487586551 KEPVKFVDLLG 11 Unmodified _KEPVKFVDLLG_ 0 0 0 ENSG00000165591|ENST00000374900|FAAH2 ENSG00000165591|ENST00000374900|FAAH2 ENSG00000165591|ENST00000374900|FAAH2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.8685302734375 2 622.866089 1243.71762 NaN NaN NaN NaN NaN NaN NaN 167.19 1 162.29 161.79 162.79 -4.8916 0 0 0 0.23087 1 32845 32845 7.609 0 1 22567 5641 14860 14865 22401 22401 0.10551402779788077 KEPVRYEQPE 10 Unmodified _KEPVRYEQPE_ 0 0 0 REV__ZNF205|p.E473Rfs*64|1|0.27|ENSG00000122386|chr16:3120076-3120076|C/-|frameshift_variant REV__ZNF205|p.E473Rfs*64|1|0.27|ENSG00000122386|chr16:3120076-3120076|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 637.889892578125 2 637.822409 1273.63027 NaN NaN NaN NaN NaN NaN NaN 166.52 1 161.54 161.04 162.04 -4.9811 0 0 0 0.22559 1 32650 32650 17.113 1.8644 1 + 22568 15687 14861 14866 22402 22402 0.004395768382437382 KEQFAWRHFYW 11 Unmodified _KEQFAWRHFYW_ 0 0 0 ENST00000440748.1_1_7:37415149-37415623:+|nuORF;ENST00000477729.1_1_15:60696796-60696997:+|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;chr6:34425221-34425583|466|19.44|0.0|20.89|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;nc|ENSG00000101278|Q9NQ39|RPS10P5;ENST00000480942.1_1_6:34392413-34392935:-|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2708129882812 3 533.261482 1596.76262 NaN NaN NaN NaN NaN NaN NaN 126.98 1 126.98 126.48 127.48 0 0 0 0 0.22632 1 25063 25063 0.2986 0 1 22569 9887 14862 14867 22403 22403 -0.011893536342995503 KEQFAWRHFYW 11 Unmodified _KEQFAWRHFYW_ 0 0 0 ENST00000440748.1_1_7:37415149-37415623:+|nuORF;ENST00000477729.1_1_15:60696796-60696997:+|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;chr6:34425221-34425583|466|19.44|0.0|20.89|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;nc|ENSG00000101278|Q9NQ39|RPS10P5;ENST00000480942.1_1_6:34392413-34392935:-|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2716064453125 3 533.261482 1596.76262 NaN NaN NaN NaN NaN NaN NaN 175.09 1 175.09 174.59 175.59 0 0 0 0 0.22632 1 36277 36277 0.026206 0 1 22570 9887 14862 14867 22404 22404 -0.011893536342995503 KEQFAWRHFYW 11 Unmodified _KEQFAWRHFYW_ 0 0 0 ENST00000440748.1_1_7:37415149-37415623:+|nuORF;ENST00000477729.1_1_15:60696796-60696997:+|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;chr6:34425221-34425583|466|19.44|0.0|20.89|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;nc|ENSG00000101278|Q9NQ39|RPS10P5;ENST00000480942.1_1_6:34392413-34392935:-|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2777709960938 3 533.261482 1596.76262 NaN NaN NaN NaN NaN NaN NaN 28.338 1 26.382 25.882 26.882 -1.9561 0 0 0 0.22632 1 5066 5066 0.50596 0 1 22571 9887 14862 14867 22405 22405 -0.011893536342995503 KEQFERQT 8 Unmodified _KEQFERQT_ 0 0 0 ENSG00000171431|ENST00000167588|KRT20;CON__P35900 ENSG00000171431|ENST00000167588|KRT20 ENSG00000171431|ENST00000167588|KRT20 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.271728515625 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 151.65 1 146.9 146.4 147.4 -4.7523 0 0 0 0.23782 1 30134 30134 0.063987 0.055711 1 + 22572 672 14863 14868 22406 22406 -0.004609195675357114 KEQLALQLA 9 Unmodified _KEQLALQLA_ 0 0 0 nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN nc|ENSG00000123240|Q96CV9-3|OPTN nc|ENSG00000123240|Q96CV9-3|OPTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 506.706787109375 2 507.303124 1012.5917 -0.24066 -0.00012209 0.34006 0.00017251 0.099397 5.0424E-05 507.30325245428406 145.88 0.45157 140.76 140.55 141 -5.1108 22 12 2 0 0 0 0.6226 1 28174 28174 2.4985 0 1 2011800 22573 3258 14864 14869 22407 22407 0.08590315994365483 KEQLLVGNSV 10 Unmodified _KEQLLVGNSV_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|319|3|anti-sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|319|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7813110351562 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 74.358 1 70.764 70.264 71.264 -3.594 0 0 0 2.8426 1 14123 14123 6.6304 1.7334 1 + 22574 23624 14865 14870 22408 22408 0.06869397160471635 KEQREEAA 8 Unmodified _KEQREEAA_ 0 0 0 ENSG00000149929|ENST00000279392|HIRIP3;nc|ENSG00000149929|Q9BW71-2|HIRIP3 ENSG00000149929|ENST00000279392|HIRIP3 ENSG00000149929|ENST00000279392|HIRIP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2410583496094 2 480.740888 959.467223 -0.056658 -2.7238E-05 -0.68586 -0.00032972 -0.74252 -0.00035696 480.7404228109738 19.259 0.45419 19.259 19.031 19.486 0 28 12 3 0 0 0 0.40222 1 3114 3114 32.305 3.2239 1 6131500 22575 4816 14866 14871 22409 22409 -0.01413181492955573 KEQTFYHVA 9 Unmodified _KEQTFYHVA_ 0 0 0 nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;ENST00000572732.1_1_16:11785059-11785929:-|nuORF nc|ENSG00000153066|Q6PKC3|TXNDC11 nc|ENSG00000153066|Q6PKC3|TXNDC11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.209716796875 3 374.857463 1121.55056 0.15752 5.9047E-05 -0.55884 -0.00020949 -0.40132 -0.00015044 374.857226687278 45.791 0.69118 45.791 45.448 46.139 0 40 19 3 0 0 0 0.43219 1 8630 8630 23.79 10.175 1 1546000 22576 4955 14867 14872 22410 22410 -0.005354450451022785 KEQTFYHVA 9 Unmodified _KEQTFYHVA_ 0 0 0 nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;ENST00000572732.1_1_16:11785059-11785929:-|nuORF nc|ENSG00000153066|Q6PKC3|TXNDC11 nc|ENSG00000153066|Q6PKC3|TXNDC11 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.857463 1121.55056 -0.32769 -0.00012284 0.056756 2.1275E-05 -0.27094 -0.00010156 374.85740792337566 48.68 0.69348 45.811 45.519 46.213 -2.869 0.0066607 0.00029987 NaN 23.79 47 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2693800 22577 4955 14867 14872 -0.005354450451022785 KEQTFYHVA 9 Unmodified _KEQTFYHVA_ 0 0 0 nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;ENST00000572732.1_1_16:11785059-11785929:-|nuORF nc|ENSG00000153066|Q6PKC3|TXNDC11 nc|ENSG00000153066|Q6PKC3|TXNDC11 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 374.857463 1121.55056 0.02185 8.1905E-06 -0.12817 -4.8047E-05 -0.10632 -3.9856E-05 374.8573716680512 48.81 0.63133 45.811 45.436 46.067 -2.999 0.0067489 9.1904E-05 NaN 23.79 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2308500 22578 4955 14867 14872 -0.005354450451022785 KEQYSRYQKAA 11 Unmodified _KEQYSRYQKAA_ 0 0 0 RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant;nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47 RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22430419921875 3 457.905364 1370.69426 -0.57902 -0.00026514 0.020438 9.3586E-06 -0.55858 -0.00025578 457.905313644331 15.962 0.21251 14.746 14.585 14.797 -1.2159 7 5 2 0 0 0 0.66087 1 2486 2486 1.4551 1.2831 1 300410 22579 5454 14868 14873 22411 22411 0.023743569951875543 KERELSSA 8 Unmodified _KERELSSA_ 0 0 0 REV__ENST00000440884.7_1_14:103851765-103851996:+|nuORF REV__ENST00000440884.7_1_14:103851765-103851996:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2482604980469 2 460.245806 918.47706 0.14009 6.4475E-05 1.8433 0.00084839 1.9834 0.00091286 460.2466864624741 34.519 0.45087 32.267 32.012 32.463 -2.2527 22 12 2 0 0 0 0.36038 1 6030 6030 34.102 0 1 796470 + 22580 21707 14869 14874 22412 22412 0.014560065124214816 KEREQIEY 8 Unmodified _KEREQIEY_ 0 0 0 REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7794189453125 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 75.346 1 71.712 71.212 72.212 -3.6337 0 0 0 0.22647 1 14321 14321 6.1918 4.4496 1 + 22581 16959 14870 14875 22413 22413 -0.0026405277033063612 KERERLAKG 9 Unmodified _KERERLAKG_ 0 0 0 ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4 ENSG00000136875|ENST00000374198|PRPF4 ENSG00000136875|ENST00000374198|PRPF4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7828369140625 2 543.822547 1085.63054 NaN NaN NaN NaN NaN NaN NaN 152.15 1 146.97 146.47 147.47 -5.1759 0 0 0 0.19665 1 29487 29487 0.87518 0.80191 1 22582 4047 14871 14876 22414 22414 0.09115041348741215 KERHRHFHV 9 Unmodified _KERHRHFHV_ 0 0 0 REV__ENSG00000165821|ENST00000537235|SALL2 REV__ENSG00000165821|ENST00000537235|SALL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7781982421875 2 623.33923 1244.66391 0.36275 0.00022612 2.3682 0.0014762 2.731 0.0017023 623.8423807006135 149.25 0.20193 144.05 143.94 144.15 -5.1994 6 4 2 0 0 0 0.64382 1 28900 28900 10.074 2.7847 1 2480400 + 22583 17802 14872 14877 22415 22415 0.051360879113190094 KERICLARY 9 Unmodified _KERICLARY_ 0 0 0 REV__nc|ENSG00000116748|P23109-2|AMPD1 REV__nc|ENSG00000116748|P23109-2|AMPD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3224487304688 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 69.075 1 65.684 65.184 66.184 -3.3903 0 0 0 0.19649 1 13055 13055 1.2148 0 1 + 22584 15496 14873 14878 22416 22416 0.058808696194319054 KERKIKQIRER 11 Unmodified _KERKIKQIRER_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3875122070312 2 742.462616 1482.91068 NaN NaN NaN NaN NaN NaN NaN 139.88 1 134.93 134.43 135.43 -4.952 0 0 0 0.23698 1 26914 26914 1.0715 0.72083 1 + 22585 19304 14874 14879 22417 22417 0.18853957619535322 KERLINRQR 9 Unmodified _KERLINRQR_ 0 0 0 REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.0335998535156 4 303.937548 1211.72109 -0.58965 -0.00017922 0.3562 0.00010826 -0.23345 -7.0955E-05 303.9376808614429 15.002 0.28248 15.002 14.878 15.161 0 24 7 4 0 0 0 0.88284 1 2254 2254 0.96228 0 1 15791000 + 22586 13594 14875 14880 22418 22418 0.12369510397024897 KERRMRLY 8 Unmodified _KERRMRLY_ 0 0 0 CACNA1A|p.F477L|1|0.22|ENSG00000141837|chr19:13317236-13317236|G/T|missense_variant CACNA1A|p.F477L|1|0.22|ENSG00000141837|chr19:13317236-13317236|G/T|missense_variant CACNA1A|p.F477L|1|0.22|ENSG00000141837|chr19:13317236-13317236|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3276977539062 2 576.326942 1150.63933 NaN NaN NaN NaN NaN NaN NaN 128.28 1 128.28 127.78 128.78 0 0 0 0 0.23711 1 25331 25331 0.12286 0.049601 1 22587 358 14876 14881 22419 22419 0.07003691713589433 KESAKVNIY 9 Unmodified _KESAKVNIY_ 0 0 0 REV__ENST00000446317.1_1_20:3471092-3471287:-|nuORF REV__ENST00000446317.1_1_20:3471092-3471287:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.07073974609375 3 351.197596 1050.57096 -0.37205 -0.00013066 0.38549 0.00013538 0.013444 4.7214E-06 351.19768235845385 34.084 0.55268 31.767 31.497 32.049 -2.3175 44 15 4 0 0 0 0.88284 1 6216 6216 0.96228 0.50394 1 5958400 + 22588 21761 14877 14882 22420 22420 0.04769725614710296 KESFTKYPRL 10 Unmodified _KESFTKYPRL_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0395812988281 4 317.930394 1267.69247 -0.42259 -0.00013435 -1.7854 -0.00056763 -2.208 -0.00070198 317.93012799097545 36.883 1.4725 36.883 36.455 37.927 0 99 41 4 0 0 0 0.76269 1 6967 6967 1.7423 0.41263 1 9214000 + 22589 19227 14878 14883 22421 22421 0.06933347977224003 KESFTKYPRL 10 Unmodified _KESFTKYPRL_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 317.930394 1267.69247 -0.55684 -0.00017704 -2.0153 -0.00064072 -2.5721 -0.00081776 317.93018097970213 39.469 1.4072 36.92 36.259 37.666 -2.5491 0.039316 0.00034347 NaN 1.7423 92 39 4 NaN NaN NaN NaN 0 NaN NaN 0 5041500 + 22590 19227 14878 14883 0.06933347977224003 KESFTKYPRL 10 Unmodified _KESFTKYPRL_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 317.930394 1267.69247 0.026556 8.443E-06 -2.8106 -0.00089358 -2.784 -0.00088513 317.9299784599072 39.318 1.6832 36.876 36.23 37.913 -2.4419 -0.0051815 -0.00066795 NaN 1.7423 110 47 4 NaN NaN NaN NaN 0 NaN NaN 0 4687300 + 22591 19227 14878 14883 0.06933347977224003 KESFTKYPRL 10 Unmodified _KESFTKYPRL_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 317.930394 1267.69247 -0.54684 -0.00017386 -2.5341 -0.00080566 -3.0809 -0.00097952 317.9301767976221 39.25 2.0292 36.845 36.441 38.471 -2.4049 -0.036218 -0.00031629 NaN 1.7423 107 57 4 NaN NaN NaN NaN 0 NaN NaN 0 4112900 + 22592 19227 14878 14883 0.06933347977224003 KESKKKKKKK 10 Unmodified _KESKKKKKKK_ 0 0 0 REV__ENST00000487688.1_1_5:889867-892539:-|nuORF REV__ENST00000487688.1_1_5:889867-892539:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7720947265625 2 630.429722 1258.84489 NaN NaN NaN NaN NaN NaN NaN 118.44 1 118.44 117.94 118.94 0 0 0 0 0.22588 1 23329 23329 0.40072 0 1 + 22593 14010 14879 14884 22422 22422 0.22582168444637318 KESKSSWK 8 Unmodified _KESKSSWK_ 0 0 0 CEP95|p.S155Y|1|0.15|ENSG00000258890|chr17:64516819-64516819|C/A|missense_variant;CEP95|p.Q357Rfs*7|1|0.07|ENSG00000258890|chr17:64526113-64526113|C/-|frameshift_variant;ENST00000553956.6_1_17:62510355-62528036:+|nuORF;ENSG00000258890|ENST00000556440|CEP95 CEP95|p.S155Y|1|0.15|ENSG00000258890|chr17:64516819-64516819|C/A|missense_variant CEP95|p.S155Y|1|0.15|ENSG00000258890|chr17:64516819-64516819|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2641906738281 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 49.304 1 46.305 45.805 46.805 -2.999 0 0 0 0.23664 1 9013 9013 3.2813 0 1 22594 498 14880 14885 22423 22423 0.02332883409144415 KESKTREYY 9 Unmodified _KESKTREYY_ 0 0 0 NCOR1|p.P1637Qfs*19|1|0.14|ENSG00000141027|chr17:16065526-16065526|G/-|frameshift_variant;nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;NCOR1|p.R572Efs*18|1|0.07|ENSG00000141027|chr17:16121191-16121191|C/-|frameshift_variant;nc|ENSG00000141027|O75376-3|NCOR1 NCOR1|p.P1637Qfs*19|1|0.14|ENSG00000141027|chr17:16065526-16065526|G/-|frameshift_variant NCOR1|p.P1637Qfs*19|1|0.14|ENSG00000141027|chr17:16065526-16065526|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3017578125 2 602.303852 1202.59315 NaN NaN NaN NaN NaN NaN NaN 24.731 1 22.877 22.377 23.377 -1.8534 0 0 0 0.22621 1 4034 4034 15.847 1.9411 1 22595 4343 14881 14886 22424 22424 -4.094707514923357E-05 KESLDAHPG 9 Unmodified _KESLDAHPG_ 0 0 0 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7227478027344 2 477.237981 952.461409 0.34277 0.00016358 -0.51323 -0.00024493 -0.17045 -8.1347E-05 477.23773533590696 20.732 0.84646 19.335 19.072 19.919 -1.3966 42 23 3 0 0 0 0.57447 1 3457 3457 14.838 0.93222 1 6880700 22596 3288 14882 14887 22425 22425 -0.016722800046181874 KESPRPPAP 9 Unmodified _KESPRPPAP_ 0 0 0 nc|ENSG00000203865|Q5TC04|ATP1A1-AS1;ENST00000369491.1_1_1:116948227-116948512:-|nuORF nc|ENSG00000203865|Q5TC04|ATP1A1-AS1 nc|ENSG00000203865|Q5TC04|ATP1A1-AS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2745056152344 2 489.771991 977.529429 0.32789 0.00016059 0.20377 9.9803E-05 0.53167 0.00026039 489.77214228308696 39.77 0.4523 39.77 39.372 39.824 0 17 12 2 0 0 0 0.58804 1 7363 7363 13.906 0.86358 1 641450 22597 9121 14883 14888 22426 22426 0.039765896460380645 KESYTEKA 8 Unmodified _KESYTEKA_ 0 0 0 REV__APP|p.C158Y|1|0.28|ENSG00000142192|chr21:26051189-26051189|C/T|missense_variant REV__APP|p.C158Y|1|0.28|ENSG00000142192|chr21:26051189-26051189|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73223876953125 2 478.24019 954.465826 0.20828 9.961E-05 -0.51651 -0.00024702 -0.30822 -0.0001474 478.2399028771986 33.59 0.52002 31.443 31.187 31.707 -2.1468 23 14 2 0 0 0 8448 1 5903 5903 3.2813 0 1 856300 + 22598 13087 14884 14889 22427 22427 -0.013228155817159859 KETESHKA 8 Unmodified _KETESHKA_ 0 0 0 ENSG00000106258|ENST00000222982|CYP3A5;ENSG00000160868|ENST00000651514|CYP3A4 ENSG00000106258|ENST00000222982|CYP3A5 ENSG00000106258|ENST00000222982|CYP3A5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2373046875 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 28.596 1 28.596 28.096 29.096 0 0 0 0 0.20344 1 5083 5083 22.736 2.2827 1 22599 2368 14885 14890 22428 22428 -0.005682800046201919 KETFFFLY 8 Unmodified _KETFFFLY_ 0 0 0 REV__nc|ENSG00000104635|Q15043-2|SLC39A14 REV__nc|ENSG00000104635|Q15043-2|SLC39A14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7827758789062 2 547.781493 1093.54843 NaN NaN NaN NaN NaN NaN NaN 49.266 1 46.26 45.76 46.76 -3.0068 0 0 0 0.23294 1 9036 9036 0.62683 0 1 + 22600 14930 14886 14891 22429 22429 0.005401262171062626 KETKFPHA 8 Unmodified _KETKFPHA_ 0 0 0 REV__tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1 REV__tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7372741699219 2 479.261259 956.507966 0.015955 7.6468E-06 1.922 0.00092116 1.938 0.0009288 479.26204403092345 48.274 0.56006 45.332 44.899 45.459 -2.9421 20 15 2 0 0 0 0.97966 1 8742 8742 16.942 8.349 1 460970 + 22601 25402 14887 14892 22430 22430 0.027972046173204035 KETKFPHA 8 Unmodified _KETKFPHA_ 0 0 0 REV__tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1 REV__tr|U7T4Z9|U7T4Z9_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00618PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.261259 956.507966 0.253 0.00012125 0.23734 0.00011375 0.49034 0.000235 479.26119974128727 45.337 0.21289 45.337 45.27 45.483 0 0.0023967 -0.0010269 NaN 16.942 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 724640 + 22602 25402 14887 14892 0.027972046173204035 KETKVMKLRK 10 Unmodified _KETKVMKLRK_ 0 0 0 nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2 nc|ENSG00000080561|Q9UJV3-2|MID2 nc|ENSG00000080561|Q9UJV3-2|MID2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.758056640625 2 630.894657 1259.77476 NaN NaN NaN NaN NaN NaN NaN 128.43 1 123.61 123.11 124.11 -4.817 0 0 0 2.8426 1 24654 24654 0.013265 0.011884 1 22603 1615 14888 14893 22431 22431 0.15526546784508355 KETRNQRY 8 Unmodified _KETRNQRY_ 0 0 0 REV__ENSG00000165494|ENST00000690938|PCF11 REV__ENSG00000165494|ENST00000690938|PCF11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7896728515625 2 547.788704 1093.56285 0.55464 0.00030383 -0.21632 -0.0001185 0.33833 0.00018533 547.7877507840553 42.534 0.66458 42.534 42.183 42.847 0 27 18 2 0 0 0 0.72428 1 7887 7887 10.824 2.0785 1 1704800 + 22604 17775 14889 14894 22432 22432 0.019815914179389438 KETWLNGSPG 10 Unmodified _KETWLNGSPG_ 0 0 0 REV__ENST00000301455.6_1_19:8438821-8439109:+|nuORF REV__ENST00000301455.6_1_19:8438821-8439109:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 544.7702026367188 2 544.772188 1087.52982 NaN NaN NaN NaN NaN NaN NaN 18.471 1 18.471 17.971 18.971 0 0 0 0 0.22588 1 2975 2975 9.3831 2.0939 1 + 22605 20408 14890 14895 22433 22433 -0.0104403542475211 KEVAIHLH 8 Unmodified _KEVAIHLH_ 0 0 0 nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1 nc|ENSG00000203710|P17927|CR1 nc|ENSG00000203710|P17927|CR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.18658447265625 3 316.187143 945.5396 NaN NaN NaN NaN NaN NaN NaN 44.43 1 41.64 41.14 42.14 -2.79 0 0 0 0.21486 1 8348 8348 4.3292 2.485 1 22606 7540 14891 14896 22434 22434 0.06465197371267095 KEVAIHLH 8 Unmodified _KEVAIHLH_ 0 0 0 nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1 nc|ENSG00000203710|P17927|CR1 nc|ENSG00000203710|P17927|CR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1868896484375 3 316.187143 945.5396 NaN NaN NaN NaN NaN NaN NaN 44.362 1 41.614 41.114 42.114 -2.7475 0 0 0 0.21486 1 8026 8026 1.8442 0.36234 1 22607 7540 14891 14896 22435 22435 0.06465197371267095 KEVASEIW 8 Unmodified _KEVASEIW_ 0 0 0 ENSG00000154654|ENST00000400546|NCAM2 ENSG00000154654|ENST00000400546|NCAM2 ENSG00000154654|ENST00000400546|NCAM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2446594238281 2 481.2531 960.491647 -0.31618 -0.00015216 0.59471 0.00028621 0.27854 0.00013405 481.253289248104 62.129 1.0714 62.129 61.768 62.839 0 55 30 3 0 0 0 8448 2 11967 11967;11972 20.454 5.6154 1 4036100 22608 5020 14892 14897 22436;22437 22436 0.00982078660570096 KEVHRLAC 8 Unmodified _KEVHRLAC_ 0 0 0 REV__nc|ENSG00000008083|Q92833-3|JARID2 REV__nc|ENSG00000008083|Q92833-3|JARID2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.1759948730469 3 319.17625 954.50692 NaN NaN NaN NaN NaN NaN NaN 93.734 1 89.59 89.09 90.09 -4.1435 0 0 0 0.21486 1 17871 17871 1.8442 1.3859 1 + 22609 13895 14893 14898 22438 22438 0.02784666976765493 KEVKMEFCSC 10 Unmodified _KEVKMEFCSC_ 0 0 0 ENST00000476594.1_1_7:45077926-45102799:+|nuORF ENST00000476594.1_1_7:45077926-45102799:+|nuORF ENST00000476594.1_1_7:45077926-45102799:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2807006835938 2 602.26397 1202.51339 NaN NaN NaN NaN NaN NaN NaN 25.856 1 25.856 25.356 26.356 0 0 0 0 0.22588 1 4506 4506 4.897 0.95262 1 22610 10292 14894 14899 22439 22439 -0.07976943969038075 KEVQKRYK 8 Unmodified _KEVQKRYK_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16553460-16553589:-|nuORF;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2164306640625 3 360.217102 1077.62948 NaN NaN NaN NaN NaN NaN NaN 176.37 1 171.47 170.97 171.97 -4.9008 0 0 0 0.21486 1 35164 35164 0.45834 0 1 22611 1830 14895 14900 22440 22440 0.09376826979860198 KEWDKTHLY 9 Unmodified _KEWDKTHLY_ 0 0 0 ENST00000540725.5_1_11:62622615-62622948:-|nuORF ENST00000540725.5_1_11:62622615-62622948:-|nuORF ENST00000540725.5_1_11:62622615-62622948:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 407.5428771972656 3 407.208384 1218.60332 -0.51023 -0.00020777 0.29749 0.00012114 -0.21274 -8.6629E-05 407.2083268624781 52.617 0.77131 49.521 49.129 49.901 -3.0954 31 21 2 0 0 0 0.10537 1 9708 9708 30.703 15.746 1 809930 22612 11076 14896 14901 22441 22441 0.0027651301770674763 KEWDKTHLY 9 Unmodified _KEWDKTHLY_ 0 0 0 ENST00000540725.5_1_11:62622615-62622948:-|nuORF ENST00000540725.5_1_11:62622615-62622948:-|nuORF ENST00000540725.5_1_11:62622615-62622948:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 407.208384 1218.60332 0.24857 0.00010122 -0.069791 -2.8419E-05 0.17878 7.2799E-05 407.2080955159223 49.377 0.52768 49.377 49.125 49.653 0 -0.16908 -0.00019346 NaN 30.703 26 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1194100 22613 11076 14896 14901 0.0027651301770674763 KEWDKTHLY 9 Unmodified _KEWDKTHLY_ 0 0 0 ENST00000540725.5_1_11:62622615-62622948:-|nuORF ENST00000540725.5_1_11:62622615-62622948:-|nuORF ENST00000540725.5_1_11:62622615-62622948:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 407.208384 1218.60332 -0.3762 -0.00015319 0.16949 6.9018E-05 -0.20671 -8.4174E-05 407.2083551542653 52.533 0.55172 49.649 49.377 49.929 -2.8837 0.10303 9.8855E-05 NaN 30.703 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1140900 22614 11076 14896 14901 0.0027651301770674763 KEWDKTHLY 9 Unmodified _KEWDKTHLY_ 0 0 0 ENST00000540725.5_1_11:62622615-62622948:-|nuORF ENST00000540725.5_1_11:62622615-62622948:-|nuORF ENST00000540725.5_1_11:62622615-62622948:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 407.208384 1218.60332 0.030747 1.2521E-05 -0.25687 -0.0001046 -0.22612 -9.2079E-05 407.2082154996267 52.724 0.66973 49.637 49.299 49.969 -3.0876 0.090709 -0.000422 NaN 30.703 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1438600 22615 11076 14896 14901 0.0027651301770674763 KEWPQTHQA 9 Unmodified _KEWPQTHQA_ 0 0 0 ENSG00000006530|ENST00000649286|AGK ENSG00000006530|ENST00000649286|AGK ENSG00000006530|ENST00000649286|AGK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2225341796875 3 375.520962 1123.54106 -0.18305 -6.874E-05 0.022223 8.3452E-06 -0.16083 -6.0394E-05 375.52090908304365 20.397 0.92324 20.397 19.928 20.851 0 65 25 3 0 0 0 0.79986 1 3371 3371 18.373 8.2225 1 2618300 22616 1008 14897 14902 22442 22442 -0.015772133306199976 KEWPQTHQA 9 Unmodified _KEWPQTHQA_ 0 0 0 ENSG00000006530|ENST00000649286|AGK ENSG00000006530|ENST00000649286|AGK ENSG00000006530|ENST00000649286|AGK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2120666503906 3 375.520962 1123.54106 0.33318 0.00012512 -0.51405 -0.00019304 -0.18087 -6.7919E-05 375.52073337484677 22.008 0.9448 20.534 20.125 21.07 -1.4742 65 26 3 0 0 0 0.56124 1 3721 3721 37.075 25.58 1 2472800 22617 1008 14897 14902 22443 22443 -0.015772133306199976 KEWPQTHQA 9 Unmodified _KEWPQTHQA_ 0 0 0 ENSG00000006530|ENST00000649286|AGK ENSG00000006530|ENST00000649286|AGK ENSG00000006530|ENST00000649286|AGK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.212158203125 3 375.520962 1123.54106 -1.288 -0.00048367 1.0209 0.00038335 -0.26715 -0.00010032 375.52132513474004 22.204 0.93258 20.483 20.019 20.952 -1.7211 66 26 3 0 0 0 0.25795 1 3503 3503 47.732 29.359 1 1984800 22618 1008 14897 14902 22444 22444 -0.015772133306199976 KEWPVSSF 8 Unmodified _KEWPVSSF_ 0 0 0 ENSG00000066697|ENST00000395067|MSANTD3 ENSG00000066697|ENST00000395067|MSANTD3 ENSG00000066697|ENST00000395067|MSANTD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2572326660156 2 490.247818 978.481082 0.18576 9.1069E-05 1.1883 0.00058257 1.3741 0.00067364 490.24813736371635 111.44 0.87011 111.44 111.1 111.97 0 39 24 2 0 0 0 0.27251 1 21996 21996 38.176 0.20157 1 1479700 22619 1375 14898 14903 22445 22445 -0.009019039938493734 KEYENLKEA 9 Unmodified _KEYENLKEA_ 0 0 0 TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant;ENSG00000183763|ENST00000331456|TRAIP TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2179870605469 3 375.192511 1122.5557 -0.0023818 -8.9364E-07 -0.14041 -5.268E-05 -0.14279 -5.3573E-05 375.1923490092659 24.128 0.62846 22.594 22.362 22.991 -1.5342 54 17 4 0 0 0 0.040668 1 3917 3917 64.927 18.904 1 13187000 22620 6866 14899 14904 22446 22446 -0.0006718597312556085 KEYIKEIA 8 Unmodified _KEYIKEIA_ 0 0 0 tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1 tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1 tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.0055847167969 3 331.858692 992.554247 -0.33026 -0.0001096 0.022221 7.3744E-06 -0.30804 -0.00010222 331.8586465710483 71.517 0.38517 68.05 67.838 68.223 -3.467 14 10 2 0 0 0 1.0252 1 13584 13584 3.2813 0 1 474910 22621 26128 14900 14905 22447 22447 0.05767224728765541 KEYLVTVVA 9 Unmodified _KEYLVTVVA_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 510.75457763671875 2 511.30005 1020.58555 -0.63418 -0.00032426 0.58007 0.00029659 -0.05411 -2.7667E-05 511.30026215703583 108.34 1.0125 104.02 103.34 104.35 -4.32 90 28 4 0 0 0 0.27464 1 21381 21381 36.81 33.927 1 34230000 22622 1659 14901 14906 22448 22448 0.07607797762864266 KEYLVTVVA 9 Unmodified _KEYLVTVVA_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 511.30005 1020.58555 -0.5684 -0.00029062 0.52281 0.00026731 -0.045591 -2.331E-05 511.3002312620198 108.5 1.1335 104.04 103.23 104.36 -4.4518 0.013621 -2.9436E-05 NaN 36.81 96 32 4 NaN NaN NaN NaN 0 NaN NaN 0 33244000 22623 1659 14901 14906 0.07607797762864266 KEYQKSIW 8 Unmodified _KEYQKSIW_ 0 0 0 ENST00000369002.8_1_6:108246088-108279112:-|nuORF ENST00000369002.8_1_6:108246088-108279112:-|nuORF ENST00000369002.8_1_6:108246088-108279112:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2620239257812 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 17.672 1 16.157 15.657 16.657 -1.5148 0 0 0 0.21486 1 2578 2578 5.7319 0.83484 1 22624 9106 14902 14907 22449 22449 0.023337429602634074 KEYQSRVTA 9 Unmodified _KEYQSRVTA_ 0 0 0 JAG1|p.C78Y|1|0.1|ENSG00000101384|chr20:10672855-10672855|C/T|missense_variant;JAG1-INPP5A|1|fusion;ENSG00000101384|ENST00000254958|JAG1 JAG1|p.C78Y|1|0.1|ENSG00000101384|chr20:10672855-10672855|C/T|missense_variant JAG1|p.C78Y|1|0.1|ENSG00000101384|chr20:10672855-10672855|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2722778320312 2 541.285463 1080.55637 0.22309 0.00012076 0.58134 0.00031467 0.80443 0.00043543 541.285408190383 16.351 0.20598 16.351 16.234 16.44 0 11 5 3 0 0 0 0.58395 1 2541 2541 28.495 2.2264 1 704910 22625 2061 14903 14908 22450 22450 0.019316534665676954 KEYQSRVTA 9 Unmodified _KEYQSRVTA_ 0 0 0 JAG1|p.C78Y|1|0.1|ENSG00000101384|chr20:10672855-10672855|C/T|missense_variant;JAG1-INPP5A|1|fusion;ENSG00000101384|ENST00000254958|JAG1 JAG1|p.C78Y|1|0.1|ENSG00000101384|chr20:10672855-10672855|C/T|missense_variant JAG1|p.C78Y|1|0.1|ENSG00000101384|chr20:10672855-10672855|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2847290039062 2 541.285463 1080.55637 0.0073516 3.9793E-06 0.047148 2.5521E-05 0.0545 2.95E-05 541.2853908565393 17.566 0.16996 16.255 16.169 16.339 -1.3109 7 4 2 0 0 0 0.58077 1 2829 2829 14.405 4.3315 1 345260 22626 2061 14903 14908 22451 22451 0.019316534665676954 KEYQSRVTA 9 Unmodified _KEYQSRVTA_ 0 0 0 JAG1|p.C78Y|1|0.1|ENSG00000101384|chr20:10672855-10672855|C/T|missense_variant;JAG1-INPP5A|1|fusion;ENSG00000101384|ENST00000254958|JAG1 JAG1|p.C78Y|1|0.1|ENSG00000101384|chr20:10672855-10672855|C/T|missense_variant JAG1|p.C78Y|1|0.1|ENSG00000101384|chr20:10672855-10672855|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 541.285463 1080.55637 -1.1339 -0.00061376 1.2506 0.00067694 0.11672 6.3181E-05 541.2861204168071 18.074 0.48702 16.559 16.327 16.814 -1.5148 0.17049 0.00020155 NaN 14.405 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4890000 22627 2061 14903 14908 0.019316534665676954 KEYSFDSRHKP 11 Unmodified _KEYSFDSRHKP_ 0 0 0 CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant;CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2597327-2598221:-|nuORF CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24603271484375 3 465.233481 1392.67861 0.55826 0.00025972 -0.74676 -0.00034742 -0.18851 -8.77E-05 465.23319016477285 22.328 0.34104 20.854 20.696 21.037 -1.4742 15 9 2 0 0 0 0.50321 1 3809 3809 23.016 13.251 1 738870 22628 589 14904 14909 22452 22452 -0.0020192952188153868 KEYSFDSRHKP 11 Unmodified _KEYSFDSRHKP_ 0 0 0 CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant;CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2597327-2598221:-|nuORF CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 465.233481 1392.67861 0.11247 5.2325E-05 -1.014 -0.00047176 -0.90156 -0.00041943 465.23305921304626 20.605 0.24598 20.605 20.459 20.705 0 -0.12557 -0.00081696 NaN 23.016 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 817870 22629 589 14904 14909 -0.0020192952188153868 KEYSFDSRHKP 11 Unmodified _KEYSFDSRHKP_ 0 0 0 CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant;CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2597327-2598221:-|nuORF CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 465.233481 1392.67861 -0.17202 -8.0028E-05 -0.21978 -0.00010225 -0.3918 -0.00018228 465.2332324945455 22.173 0.38191 20.719 20.528 20.91 -1.4535 -0.010792 0.00029157 NaN 23.016 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1003300 22630 589 14904 14909 -0.0020192952188153868 KEYSFDSRHKP 11 Unmodified _KEYSFDSRHKP_ 0 0 0 CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant;CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2597327-2598221:-|nuORF CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 465.233481 1392.67861 -0.55116 -0.00025642 -0.093739 -4.3611E-05 -0.6449 -0.00030003 465.23335857190847 22.531 0.31235 20.743 20.607 20.92 -1.7886 0.012636 0.00046749 NaN 23.016 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 572530 22631 589 14904 14909 -0.0020192952188153868 KFANKVIKY 9 Unmodified _KFANKVIKY_ 0 0 0 REV__tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1 REV__tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 555.838134765625 2 555.837134 1109.65972 NaN NaN NaN NaN NaN NaN NaN 10.994 1 9.9273 9.4273 10.427 -1.0664 0 0 0 0.23508 1 1220 1220 0.52476 0.52476 1 + 22632 24916 14905 14910 22453 22453 0.10927185645027748 KFAQKRWIYED 11 Unmodified _KFAQKRWIYED_ 0 0 0 nc|ENSG00000128595|O43852-13|CALU;nc|ENSG00000128595|O43852-14|CALU;nc|ENSG00000128595|O43852-11|CALU;nc|ENSG00000128595|O43852-10|CALU;nc|ENSG00000128595|O43852-5|CALU;nc|ENSG00000128595|O43852-6|CALU;ENSG00000128595|ENST00000249364|CALU;nc|ENSG00000128595|O43852-3|CALU nc|ENSG00000128595|O43852-13|CALU nc|ENSG00000128595|O43852-13|CALU MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.38525390625 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 150.05 1 145.31 144.81 145.81 -4.7323 0 0 0 0.22632 1 29797 29797 0.03141 0 1 22633 3532 14906 14911 22454 22454 0.039878069259884796 KFAWTFEH 8 Unmodified _KFAWTFEH_ 0 0 0 ENST00000603247.1_1_13:98128238-98128670:+|nuORF ENST00000603247.1_1_13:98128238-98128670:+|nuORF ENST00000603247.1_1_13:98128238-98128670:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.28515625 2 533.261259 1064.50797 NaN NaN NaN NaN NaN NaN NaN 134.96 1 130.32 129.82 130.82 -4.6399 0 0 0 0.21452 1 26617 26617 13.508 4.9146 1 22634 11721 14907 14912 22455 22455 -0.021707953826762605 KFDVVDKE 8 Unmodified _KFDVVDKE_ 0 0 0 REV__ENST00000560051.1_1_14:103830578-103830779:-|nuORF REV__ENST00000560051.1_1_14:103830578-103830779:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2677001953125 2 490.258382 978.502212 0.065155 3.1943E-05 -0.064263 -3.1505E-05 0.0008921 4.3736E-07 490.2582587115382 44.68 0.42109 41.914 41.664 42.085 -2.7661 16 11 2 0 0 0 8448 1 8098 8098 2.643 0.90076 1 819510 + 22635 23035 14908 14913 22456 22456 0.012100613149982564 KFEKIEDA 8 Unmodified _KFEKIEDA_ 0 0 0 REV__tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1 REV__tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25726318359375 2 490.258382 978.502212 0.1566 7.6776E-05 -0.07244 -3.5514E-05 0.084163 4.1262E-05 490.25832206539377 129.66 0.45815 124.83 124.62 125.08 -4.8355 19 12 2 0 0 0 8448 1 24871 24871 10.074 0 1 1099400 + 22636 25175 14909 14914 22457 22457 0.012100613149868877 KFFIILLA 8 Unmodified _KFFIILLA_ 0 0 0 REV__ENST00000519132.5_1_5:178030620-178030809:-|nuORF REV__ENST00000519132.5_1_5:178030620-178030809:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 322.222412109375 3 322.212518 963.615725 NaN NaN NaN NaN NaN NaN NaN 39.402 1 36.997 36.497 37.497 -2.4049 0 0 0 0.21486 1 7033 7033 0 0 1 + 22637 22613 14910 14915 22458 22458 0.13246201218726128 KFFQRKVE 8 Unmodified _KFFQRKVE_ 0 0 0 ENSG00000110887|ENST00000228476|DAO ENSG00000110887|ENST00000228476|DAO ENSG00000110887|ENST00000228476|DAO MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2780151367188 2 541.311284 1080.60801 NaN NaN NaN NaN NaN NaN NaN 124.34 1 124.34 123.84 124.84 0 0 0 0 0.21486 1 24513 24513 8.5933 1.304 1 22638 2596 14911 14916 22459 22459 0.07093441951133173 KFFYFLILGI 10 Unmodified _KFFYFLILGI_ 0 0 0 REV__tr|U7SZF6|U7SZF6_FUSNULipoproteinsignalpeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lspAPE=3SV=1 REV__tr|U7SZF6|U7SZF6_FUSNULipoproteinsignalpeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lspAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7639770507812 2 630.873185 1259.73182 NaN NaN NaN NaN NaN NaN NaN 143.74 1 143.74 143.24 144.24 0 0 0 0 2.8426 1 28694 28694 10.151 4.2824 1 + 22639 25246 14912 14917 22460 22460 0.11234099998773672 KFFYYYFSYMY 11 Unmodified _KFFYYYFSYMY_ 0 0 0 REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2723388671875 3 541.240585 1620.69993 NaN NaN NaN NaN NaN NaN NaN 134.34 1 129.52 129.02 130.02 -4.8175 0 0 0 0.22632 1 25864 25864 0.026206 0 1 + 22640 14359 14913 14918 22461 22461 -0.08559680537359782 KFHSSFEKRRF 11 Unmodified _KFHSSFEKRRF_ 0 0 0 REV__ENSG00000118496|ENST00000237281|FBXO30 REV__ENSG00000118496|ENST00000237281|FBXO30 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26568603515625 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 32.925 1 30.709 30.209 31.209 -2.2158 0 0 0 0.22632 1 5720 5720 0.50596 0.50596 1 + 22641 15556 14914 14919 22462 22462 0.05834048739961872 KFIKAKKRLI 10 Unmodified _KFIKAKKRLI_ 0 0 0 ENSG00000154479|ENST00000447353|CFAP210 ENSG00000154479|ENST00000447353|CFAP210 ENSG00000154479|ENST00000447353|CFAP210 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.76708984375 2 622.9319 1243.84925 NaN NaN NaN NaN NaN NaN NaN 158.89 1 153.62 153.12 154.12 -5.2748 0 0 0 0.22588 1 30842 30842 1.8442 1.3859 1 22642 5014 14915 14920 22463 22463 0.23707677658217108 KFIPDLILQ 9 Unmodified _KFIPDLILQ_ 0 0 0 REV__ENSG00000167658|ENST00000309311|EEF2 REV__ENSG00000167658|ENST00000309311|EEF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7915649414062 2 543.831517 1085.64848 NaN NaN NaN NaN NaN NaN NaN 134.04 1 129.23 128.73 129.73 -4.8175 0 0 0 0.23508 1 25806 25806 8.1555 1.4324 1 + 22643 17953 14916 14921 22464 22464 0.10908363550902322 KFKETSRQK 9 Unmodified _KFKETSRQK_ 0 0 0 REV__ENST00000481837.1_1_20:19998833-20003229:+|nuORF REV__ENST00000481837.1_1_20:19998833-20003229:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3321533203125 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 33.865 1 31.547 31.047 32.047 -2.3175 0 0 0 0.19626 1 6205 6205 0.40827 0.14288 1 + 22644 22181 14917 14922 22465 22465 0.0765590814596635 KFKILVKNKK 10 Unmodified _KFKILVKNKK_ 0 0 0 nc|ENSG00000139151|Q86YW0-2|PLCZ1;nc|ENSG00000139151|Q86YW0-3|PLCZ1;ENSG00000139151|ENST00000266505|PLCZ1 nc|ENSG00000139151|Q86YW0-2|PLCZ1 nc|ENSG00000139151|Q86YW0-2|PLCZ1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 623.368408203125 2 623.423908 1244.83326 NaN NaN NaN NaN NaN NaN NaN 165.58 1 160.79 160.29 161.29 -4.7898 0 0 0 2.8426 1 33173 33173 0.013265 0.011884 1 22645 4225 14918 14923 22466 22466 0.2206397142131209 KFKLLLFL 8 Unmodified _KFKLLLFL_ 0 0 0 REV__tr|U7SGP7|U7SGP7_FUSNUHolin-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02274PE=4SV=1 REV__tr|U7SGP7|U7SGP7_FUSNUHolin-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02274PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 511.3459167480469 2 511.344064 1020.67357 NaN NaN NaN NaN NaN NaN NaN 175.14 1 170.25 169.75 170.75 -4.8916 0 0 0 0.21486 1 34905 34905 0.79363 0 1 + 22646 24879 14919 14924 22467 22467 0.1640646314414198 KFKWWGLQS 9 Unmodified _KFKWWGLQS_ 0 0 0 ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB ENSG00000180957|ENST00000335272|PITPNB ENSG00000180957|ENST00000335272|PITPNB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2630004882812 2 590.319109 1178.62366 0.46003 0.00027156 0.45564 0.00026897 0.91566 0.00054053 590.3200189972745 134.66 0.10843 130.02 129.95 130.06 -4.6399 4 2 2 0 0 0 0.6231 1 26548 26548 0.073264 0.029476 1 687400 22647 6704 14920 14925 22468 22468 0.04149728468178182 KFLANVSTV 9 Unmodified _KFLANVSTV_ 0 0 0 CON__P01966 CON__P01966 CON__P01966 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2738952636719 2 489.784567 977.554582 0.15571 7.6265E-05 0.36033 0.00017649 0.51605 0.00025275 489.7846445247343 95.361 0.4465 91.312 91.033 91.479 -4.0496 18 12 2 0 0 0 0.067773 2 18672 18672;18717 65.235 15.302 1 1470900 + 22648 651 14921 14926 22469;22470 22469 0.06490644448615512 KFLAWLTEA 9 Unmodified _KFLAWLTEA_ 0 0 0 nc|ENSG00000198947|P11532-13|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD nc|ENSG00000198947|P11532-13|DMD nc|ENSG00000198947|P11532-13|DMD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20184326171875 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 128.83 1 124.01 123.51 124.51 -4.817 0 0 0 0.23508 1 24730 24730 2.4985 0.21571 1 22649 853 14922 14927 22471 22471 0.05019217482708882 KFLTEGSF 8 Unmodified _KFLTEGSF_ 0 0 0 REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1 REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1327819824219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 93.271 1 89.281 88.781 89.781 -3.9907 0 0 0 0.21486 1 18267 18267 1.6526 0 1 + 22650 25251 14923 14928 22472 22472 0.003546936318684857 KFLTEGSF 8 Unmodified _KFLTEGSF_ 0 0 0 REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1 REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 89.012 1 85.017 84.517 85.517 -3.9953 0 0 0 0.2386 1 16960 16960 0.62683 0 1 + 22651 25251 14923 14928 22473 22473 0.003546936318684857 KFLTEGSF 8 Unmodified _KFLTEGSF_ 0 0 0 REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1 REV__tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1644592285156 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 145.81 1 140.7 140.2 141.2 -5.1108 0 0 0 0.21486 1 28187 28187 1.6526 0 1 + 22652 25251 14923 14928 22474 22474 0.003546936318684857 KFLVFIMFLL 10 Unmodified _KFLVFIMFLL_ 0 0 0 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 635.8231811523438 2 635.885238 1269.75592 0.41477 0.00026375 4.1836 0.0026603 4.5983 0.002924 635.888249683727 166.2 0.20215 166.2 166.07 166.27 0 6 5 2 0 0 0 1.1333 1 33827 33827 0.063865 0.032455 1 38387000 22653 25957 14924 14929 22475 22475 0.1318361716078016 KFLYGWKPI 9 Unmodified _KFLYGWKPI_ 0 0 0 ENST00000461449.5_1_1:111660849-111661437:-|nuORF ENST00000461449.5_1_1:111660849-111661437:-|nuORF ENST00000461449.5_1_1:111660849-111661437:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3358764648438 2 576.334227 1150.6539 NaN NaN NaN NaN NaN NaN NaN 164.94 1 160.15 159.65 160.65 -4.7898 0 0 0 0.23508 1 32996 32996 7.2892 0.56607 1 22654 10072 14925 14930 22476 22476 0.08460087133380512 KFMDYVQL 8 Unmodified _KFMDYVQL_ 0 0 0 ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3 ENST00000414786.6_1_22:51113069-51169737:+|nuORF ENST00000414786.6_1_22:51113069-51169737:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.261962890625 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 36.827 1 34.359 33.859 34.859 -2.4688 0 0 0 0.23837 1 6802 6802 0.12286 0.079078 1 22655 9607 14926 14931 22477 22477 -0.0038040417739466648 KFNKTYYD 8 Unmodified _KFNKTYYD_ 0 0 0 REV__tr|U7SXW9|U7SXW9_FUSNUChaperoneproteinHtpGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=htpGPE=3SV=1 REV__tr|U7SXW9|U7SXW9_FUSNUChaperoneproteinHtpGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=htpGPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.266845703125 2 539.763832 1077.51311 -0.45528 -0.00024574 0.034303 1.8516E-05 -0.42098 -0.00022723 539.76395207873 22.684 0.45131 20.895 20.607 21.059 -1.7886 33 12 4 0 0 0 0.752 1 3577 3577 5.2307 0 1 2889900 + 22656 25221 14927 14932 22478 22478 -0.022545363107155936 KFNLDMHQR 9 Unmodified _KFNLDMHQR_ 0 0 0 ENSG00000159905|ENST00000587682|ZNF221;ENSG00000256294|ENST00000262894|ZNF225 ENSG00000159905|ENST00000587682|ZNF221 ENSG00000159905|ENST00000587682|ZNF221 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 595.1362915039062 2 594.800757 1187.58696 0.53573 0.00031865 1.8021 0.0010719 2.3378 0.0013905 594.8019425859974 17.955 0.21303 16.644 16.511 16.725 -1.3109 10 5 2 0 0 0 0.88312 1 2874 2874 1.8442 0 1 614650 22657 5224 14928 14933 22479 22479 0.0006710857994676189 KFNLDMHQR 9 Unmodified _KFNLDMHQR_ 0 0 0 ENSG00000159905|ENST00000587682|ZNF221;ENSG00000256294|ENST00000262894|ZNF225 ENSG00000159905|ENST00000587682|ZNF221 ENSG00000159905|ENST00000587682|ZNF221 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 594.800757 1187.58696 0.28584 0.00017002 1.7431 0.0010368 2.029 0.0012068 594.8019658409908 16.752 0.34723 16.752 16.613 16.96 0 0.083851 -0.00045448 NaN 1.8442 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 891560 22658 5224 14928 14933 0.0006710857994676189 KFNLDMHQR 9 Unmodified _KFNLDMHQR_ 0 0 0 ENSG00000159905|ENST00000587682|ZNF221;ENSG00000256294|ENST00000262894|ZNF225 ENSG00000159905|ENST00000587682|ZNF221 ENSG00000159905|ENST00000587682|ZNF221 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 594.800757 1187.58696 -0.022715 -1.3511E-05 3.0603 0.0018203 3.0376 0.0018068 594.8020400423758 17.882 0.27736 16.61 16.52 16.798 -1.2722 -0.059047 0.0011124 NaN 1.8442 12 7 3 NaN NaN NaN NaN 0 NaN NaN 0 593100 22659 5224 14928 14933 0.0006710857994676189 KFNPTELI 8 Unmodified _KFNPTELI_ 0 0 0 MTMR10|p.L761*|1|0.4|ENSG00000166912|chr15:30941522-30941522|A/-|frameshift_variant;ENSG00000166912|ENST00000435680|MTMR10;nc|ENSG00000166912|Q9NXD2-3|MTMR10;nc|ENSG00000166912|Q9NXD2-2|MTMR10;MTMR10|p.S561*|1|0.05|ENSG00000166912|chr15:30942941-30942942|-/AT|frameshift_variant;MTMR10|p.F552Sfs*19|1|0.26|ENSG00000166912|chr15:30942966-30942966|A/-|frameshift_variant MTMR10|p.L761*|1|0.4|ENSG00000166912|chr15:30941522-30941522|A/-|frameshift_variant MTMR10|p.L761*|1|0.4|ENSG00000166912|chr15:30941522-30941522|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2355651855469 2 481.271293 960.528032 NaN NaN NaN NaN NaN NaN NaN 17.143 1 15.628 15.128 16.128 -1.5148 0 0 0 0.21486 1 2471 2471 2.5775 0 1 22660 5764 14929 14934 22480 22480 0.04618955557270965 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.2218017578125 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 68.73 1 68.73 68.23 69.23 0 0 0 0 0.21486 1 13294 13294 0.40072 0 1 22661 7377 14930 14935 22481 22481 0.06848464770860119 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.22210693359375 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 74.268 1 74.268 73.768 74.768 0 0 0 0 0.21486 1 14417 14417 0.40072 0 1 22662 7377 14930 14935 22482 22482 0.06848464770860119 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.17169189453125 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 74.331 1 74.331 73.831 74.831 0 0 0 0 0.21486 1 14432 14432 0.40072 0 1 22663 7377 14930 14935 22483 22483 0.06848464770860119 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.2217102050781 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 126.55 1 126.55 126.05 127.05 0 0 0 0 0.21486 1 24974 24974 0.40072 0 1 22664 7377 14930 14935 22484 22484 0.06848464770860119 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.221923828125 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 96.323 1 92.273 91.773 92.773 -4.0496 0 0 0 0.21486 1 18887 18887 1.6526 0 1 22665 7377 14930 14935 22485 22485 0.06848464770860119 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.2217102050781 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 102.12 1 97.93 97.43 98.43 -4.1861 0 0 0 0.21486 1 20067 20067 0.40072 0 1 22666 7377 14930 14935 22486 22486 0.06848464770860119 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.1605224609375 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 106.73 1 102.46 101.96 102.96 -4.2638 0 0 0 0.21486 1 21012 21012 0.40072 0 1 22667 7377 14930 14935 22487 22487 0.06848464770860119 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.2070007324219 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 85.28 1 81.371 80.871 81.871 -3.9093 0 0 0 0.21486 1 16217 16217 0.40072 0 1 22668 7377 14930 14935 22488 22488 0.06848464770860119 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.0973815917969 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 135.26 1 130.36 129.86 130.86 -4.8951 0 0 0 0.21486 1 25981 25981 0.40072 0 1 22669 7377 14930 14935 22489 22489 0.06848464770860119 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.2221984863281 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 80.205 1 76.529 76.029 77.029 -3.676 0 0 0 0.21486 1 15289 15289 0.40072 0 1 22670 7377 14930 14935 22490 22490 0.06848464770860119 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.2337951660156 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 82.82 1 79.121 78.621 79.621 -3.6985 0 0 0 0.21486 1 15799 15799 0.40072 0 1 22671 7377 14930 14935 22491 22491 0.06848464770860119 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.23358154296875 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 83.222 1 79.524 79.024 80.024 -3.6985 0 0 0 0.21486 1 15884 15884 0.40072 0 1 22672 7377 14930 14935 22492 22492 0.06848464770860119 KFPFISLA 8 Unmodified _KFPFISLA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.2220153808594 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 86.812 1 83.083 82.583 83.583 -3.7289 0 0 0 0.21486 1 16605 16605 0.40072 0 1 22673 7377 14930 14935 22493 22493 0.06848464770860119 KFQTVDVKN 9 Unmodified _KFQTVDVKN_ 0 0 0 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 82.677 1 82.677 82.177 83.177 0 0 0 0 0.23508 1 16113 16113 1.1933 0.12188 1 + 22674 19157 14931 14936 22494 22494 0.0461712798901317 KFQTVDVKN 9 Unmodified _KFQTVDVKN_ 0 0 0 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 85.751 1 81.801 81.301 82.301 -3.9503 0 0 0 0.23508 1 16312 16312 2.7352 0 1 + 22675 19157 14931 14936 22495 22495 0.0461712798901317 KFQTVDVKN 9 Unmodified _KFQTVDVKN_ 0 0 0 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 85.556 1 81.845 81.345 82.345 -3.7117 0 0 0 0.23508 1 16346 16346 2.7352 0 1 + 22676 19157 14931 14936 22496 22496 0.0461712798901317 KFQTVDVKN 9 Unmodified _KFQTVDVKN_ 0 0 0 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018737792969 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 86.077 1 82.348 81.848 82.848 -3.7289 0 0 0 0.23508 1 16456 16456 2.7352 0.23671 1 + 22677 19157 14931 14936 22497 22497 0.0461712798901317 KFRLITVRKI 10 Unmodified _KFRLITVRKI_ 0 0 0 nc|ENSG00000124564|O00476|SLC17A3;ENSG00000124564|ENST00000397060|SLC17A3 nc|ENSG00000124564|O00476|SLC17A3 nc|ENSG00000124564|O00476|SLC17A3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24310302734375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 63.701 1 60.285 59.785 60.785 -3.4158 0 0 0 2.8426 1 11904 11904 0.69767 0.6338 1 22678 3321 14932 14937 22498 22498 0.21390489652844735 KFSELLWG 8 Unmodified _KFSELLWG_ 0 0 0 nc|ENSG00000056736|Q9NRM6-2|IL17RB;ENST00000475124.1_1_3:53880615-53891834:+|nuORF nc|ENSG00000056736|Q9NRM6-2|IL17RB nc|ENSG00000056736|Q9NRM6-2|IL17RB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2646179199219 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 66.792 1 66.792 66.292 67.292 0 0 0 0 0.23312 1 12904 12904 6.2058 0 1 22679 10272 14933 14938 22499 22499 0.02734972902874233 KFSFGCPICPY 11 Unmodified _KFSFGCPICPY_ 0 0 0 REV__HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant REV__HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.3215026855469 3 421.196322 1260.56714 -0.43979 -0.00018524 -0.083387 -3.5122E-05 -0.52318 -0.00022036 421.19626359669945 39.43 0.53032 36.881 36.642 37.172 -2.5491 41 14 4 0 0 0 0.95894 1 7304 7304 2.4348 0.15201 1 5562500 + 22680 13925 14934 14939 22500 22500 -0.05272403474987186 KFSFGCPICPY 11 Unmodified _KFSFGCPICPY_ 0 0 0 REV__HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant REV__HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.3353271484375 3 421.196322 1260.56714 -0.16576 -6.9819E-05 -0.35324 -0.00014878 -0.51901 -0.0002186 421.1961767167167 39.304 0.62691 36.899 36.655 37.282 -2.4049 38 17 3 0 0 0 0.88709 1 6972 6972 10.315 6.1986 1 3129900 + 22681 13925 14934 14939 22501 22501 -0.05272403474987186 KFSPEEKRRDS 11 Unmodified _KFSPEEKRRDS_ 0 0 0 IQCH|p.G38Rfs*10|1|0.26|ENSG00000103599|chr15:67261326-67261327|-/A|frameshift_variant IQCH|p.G38Rfs*10|1|0.26|ENSG00000103599|chr15:67261326-67261327|-/A|frameshift_variant IQCH|p.G38Rfs*10|1|0.26|ENSG00000103599|chr15:67261326-67261327|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2393798828125 3 460.240635 1377.70008 NaN NaN NaN NaN NaN NaN NaN 69.919 1 66.339 65.839 66.839 -3.5798 0 0 0 0.22632 1 13171 13171 0.2986 0.29264 1 22682 11951 14935 14940 22502 22502 0.026334555068615373 KFVKCKPG 8 Unmodified _KFVKCKPG_ 0 0 0 nc|ENSG00000204176|Q9BQS2-4|SYT15 nc|ENSG00000204176|Q9BQS2-4|SYT15 nc|ENSG00000204176|Q9BQS2-4|SYT15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.76507568359375 2 453.765123 905.515694 NaN NaN NaN NaN NaN NaN NaN 13.754 1 12.544 12.044 13.044 -1.2106 0 0 0 0.2396 1 1767 1767 0.30703 0 1 22683 12558 14936 14941 22503 22503 0.0591564061326153 KFVKKGLKF 9 Unmodified _KFVKKGLKF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77392578125 2 547.85787 1093.70119 NaN NaN NaN NaN NaN NaN NaN 160.38 1 155.59 155.09 156.09 -4.7952 0 0 0 0.19624 1 31894 31894 0.073264 0 1 22684 4411 14937 14942 22504 22504 0.15808366404371554 KFVKRKVINK 10 Unmodified _KFVKRKVINK_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;RYR3|p.N4580Mfs*8|1|0.37|ENSG00000198838|chr15:33853618-33853618|A/-|frameshift_variant nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7552490234375 2 630.419157 1258.82376 NaN NaN NaN NaN NaN NaN NaN 49.941 1 46.942 46.442 47.442 -2.999 0 0 0 0.22588 1 9136 9136 0.40072 0.050084 1 22685 7505 14938 14943 22505 22505 0.20470203135801057 KFVRRKKKL 9 Unmodified _KFVRRKKKL_ 0 0 0 ENST00000429378.5_3_16:242971-256079:-|nuORF ENST00000429378.5_3_16:242971-256079:-|nuORF ENST00000429378.5_3_16:242971-256079:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.293212890625 2 601.914042 1201.81353 NaN NaN NaN NaN NaN NaN NaN 125.96 1 121.31 120.81 121.81 -4.6495 0 0 0 0.23508 1 24233 24233 0.52476 0.52476 1 22686 9760 14939 14944 22506 22506 0.22069640201220864 KFVVKDLAKR 10 Unmodified _KFVVKDLAKR_ 0 0 0 nc|ENSG00000165164|Q6ZTR5-6|CFAP47;CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant;CFAP47|p.H2345Afs*15|1|0.09|ENSG00000165164|chrX:36236809-36236810|-/A|frameshift_variant;ENSG00000165164|ENST00000378653|CFAP47;CFAP47|p.K734Nfs*6|1|0.13|ENSG00000165164|chrX:35971909-35971909|A/-|frameshift_variant;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;CFAP47|p.F1567Vfs*4|1|0.31|ENSG00000165164|chrX:36098829-36098830|-/G|frameshift_variant nc|ENSG00000165164|Q6ZTR5-6|CFAP47 nc|ENSG00000165164|Q6ZTR5-6|CFAP47 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2890014648438 2 602.38224 1202.74993 1.0611 0.00063917 -4.3926 -0.002646 -3.3315 -0.0020068 602.3797313570553 140.55 0.14589 135.9 135.84 135.98 -4.6493 5 3 2 0 0 0 0.52224 1 27756 27756 0.063865 0.063865 1 1783900 22687 12428 14940 14945 22507 22507 0.1566623497344608 KFVVKDLAKR 10 Unmodified _KFVVKDLAKR_ 0 0 0 nc|ENSG00000165164|Q6ZTR5-6|CFAP47;CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant;CFAP47|p.H2345Afs*15|1|0.09|ENSG00000165164|chrX:36236809-36236810|-/A|frameshift_variant;ENSG00000165164|ENST00000378653|CFAP47;CFAP47|p.K734Nfs*6|1|0.13|ENSG00000165164|chrX:35971909-35971909|A/-|frameshift_variant;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;CFAP47|p.F1567Vfs*4|1|0.31|ENSG00000165164|chrX:36098829-36098830|-/G|frameshift_variant nc|ENSG00000165164|Q6ZTR5-6|CFAP47 nc|ENSG00000165164|Q6ZTR5-6|CFAP47 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2803955078125 2 602.38224 1202.74993 NaN NaN NaN NaN NaN NaN NaN 131.94 1 127.14 126.64 127.64 -4.799 0 0 0 2.8426 1 25399 25399 0.063865 0.062484 1 22688 12428 14940 14945 22508 22508 0.1566623497344608 KFVYRNMRRAR 11 Unmodified _KFVYRNMRRAR_ 0 0 0 REV__ENST00000480064.1_1_3:52643285-52649409:-|nuORF REV__ENST00000480064.1_1_3:52643285-52649409:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2116394042969 4 374.96494 1495.83065 -0.57359 -0.00021508 -1.7524 -0.0006571 -2.326 -0.00087217 374.96408880093804 15.405 0.13293 14.184 14.067 14.2 -1.2219 5 3 2 0 0 0 0.82392 1 2144 2144 0.45452 0.35968 1 368790 + 22689 22160 14941 14946 22509 22509 0.10257192744688837 KFVYRNMRRAR 11 Unmodified _KFVYRNMRRAR_ 0 0 0 REV__ENST00000480064.1_1_3:52643285-52649409:-|nuORF REV__ENST00000480064.1_1_3:52643285-52649409:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2116394042969 4 374.96494 1495.83065 -0.57359 -0.00021508 -1.7524 -0.0006571 -2.326 -0.00087217 374.96408880093804 15.405 0.13293 14.184 14.067 14.2 -1.2219 5 3 2 0 0 0 0.89135 1 2141 2141 0.00056442 0.00056442 1 368790 + 22690 22160 14941 14946 22510 22510 0.10257192744688837 KFWLERSIRAY 11 Unmodified _KFWLERSIRAY_ 0 0 0 REV__ENSG00000101292|ENST00000678254|PROKR2 REV__ENSG00000101292|ENST00000678254|PROKR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.261962890625 3 490.273499 1467.79867 NaN NaN NaN NaN NaN NaN NaN 150.99 1 150.99 150.49 151.49 0 0 0 0 0.22632 1 30237 30237 1.4551 0 1 + 22691 14771 14942 14947 22511 22511 0.08348103542562058 KFWWVERNFYF 11 Unmodified _KFWWVERNFYF_ 0 0 0 ENST00000295924.11_2_3:156423406-156423454:+|nuORF ENST00000295924.11_2_3:156423406-156423454:+|nuORF ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2655639648438 3 541.269866 1620.78777 NaN NaN NaN NaN NaN NaN NaN 148.79 1 148.79 148.29 149.29 0 0 0 0 0.22632 1 29780 29780 0.22855 0.13371 1 22692 8496 14943 14948 22512 22512 0.0022070116826853337 KFWWVERNFYF 11 Unmodified _KFWWVERNFYF_ 0 0 0 ENST00000295924.11_2_3:156423406-156423454:+|nuORF ENST00000295924.11_2_3:156423406-156423454:+|nuORF ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2728881835938 3 541.269866 1620.78777 NaN NaN NaN NaN NaN NaN NaN 141.41 1 136.76 136.26 137.26 -4.6493 0 0 0 0.22632 1 27933 27933 0.094841 0 1 22693 8496 14943 14948 22513 22513 0.0022070116826853337 KFWWVERNFYF 11 Unmodified _KFWWVERNFYF_ 0 0 0 ENST00000295924.11_2_3:156423406-156423454:+|nuORF ENST00000295924.11_2_3:156423406-156423454:+|nuORF ENST00000295924.11_2_3:156423406-156423454:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2739868164062 3 541.269866 1620.78777 0.35126 0.00019012 -0.39694 -0.00021485 -0.045684 -2.4727E-05 541.6053438678722 140.72 0.24237 135.86 135.77 136.01 -4.8678 9 6 2 0 0 0 0.66298 2 27152 27152;27155 0.094841 0 1 2429700 22694 8496 14943 14948 22514;22515 22514 0.0022070116826853337 KFYFMSGFAY 10 Unmodified _KFYFMSGFAY_ 0 0 0 tr|U7T3W8|U7T3W8_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00288PE=4SV=1 tr|U7T3W8|U7T3W8_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00288PE=4SV=1 tr|U7T3W8|U7T3W8_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00288PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7548828125 2 630.791535 1259.56852 NaN NaN NaN NaN NaN NaN NaN 96.288 1 92.054 91.554 92.554 -4.2348 0 0 0 0.22588 1 18382 18382 7.2892 0.65886 1 22695 26420 14944 14949 22516 22516 -0.05088446114564249 KGAARGGG 8 Unmodified _KGAARGGG_ 0 0 0 REV__ENST00000485324.1_1_X:152959425-152959824:+|nuORF REV__ENST00000485324.1_1_X:152959425-152959824:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.1913146972656 2 337.190637 672.366721 NaN NaN NaN NaN NaN NaN NaN 41.649 1 41.649 41.149 42.149 0 0 0 0 0.2396 1 7775 7775 0.063987 0.014195 1 + 22696 22219 14945 14950 22517 22517 0.017432510347248353 KGAATPKPVPE 11 Unmodified _KGAATPKPVPE_ 0 0 0 ENSG00000173482|ENST00000580170|PTPRM;nc|ENSG00000173482|P28827|PTPRM ENSG00000173482|ENST00000580170|PTPRM ENSG00000173482|ENST00000580170|PTPRM MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7827758789062 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 165.25 1 160.3 159.8 160.8 -4.9484 0 0 0 0.2018 1 32277 32277 18.373 2.224 1 22697 6296 14946 14951 22518 22518 0.07009701023071102 KGADVNECDFY 11 Unmodified _KGADVNECDFY_ 0 0 0 RNASEL|p.A345Qfs*3|1|0.26|ENSG00000135828|chr1:182585774-182585774|C/-|frameshift_variant;RNASEL|p.F383Sfs*7|1|0.23|ENSG00000135828|chr1:182585661-182585661|C/-|frameshift_variant;RNASEL|p.M644*|2|0.18|ENSG00000135828|chr1:182576365-182576365|T/-|frameshift_variant;RNASEL|p.M644Nfs*3|2|0.29|ENSG00000135828|chr1:182576364-182576365|-/T|frameshift_variant;nc|ENSG00000135828|Q05823-2|RNASEL;RNASEL|p.R651Kfs*11|2|0.31|ENSG00000135828|chr1:182576343-182576344|-/T|frameshift_variant;ENSG00000135828|ENST00000367559|RNASEL RNASEL|p.A345Qfs*3|1|0.26|ENSG00000135828|chr1:182585774-182585774|C/-|frameshift_variant RNASEL|p.A345Qfs*3|1|0.26|ENSG00000135828|chr1:182585774-182585774|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.76513671875 2 630.763703 1259.51285 NaN NaN NaN NaN NaN NaN NaN 107.36 1 102.95 102.45 103.45 -4.4121 0 0 0 0.23264 1 20597 20597 6.2058 2.2614 1 22698 3955 14947 14952 22519 22519 -0.1065232409289365 KGALAKTYNQ 10 Unmodified _KGALAKTYNQ_ 0 0 0 REV__nc|ENSG00000083444|Q02809-2|PLOD1 REV__nc|ENSG00000083444|Q02809-2|PLOD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.788330078125 2 547.303655 1092.59276 0.33902 0.00018554 -1.0337 -0.00056575 -0.69468 -0.0003802 547.305270548601 164.1 0.13335 164.1 164.05 164.19 0 5 3 2 0 0 0 0.67319 1 33152 33152 13.906 0 1 7561400 + 22699 14450 14948 14953 22520 22520 0.050165303632638825 KGAPDRNGCVY 11 Unmodified _KGAPDRNGCVY_ 0 0 0 ENST00000551310.1_1_12:90049805-90103048:-|nuORF ENST00000551310.1_1_12:90049805-90103048:-|nuORF ENST00000551310.1_1_12:90049805-90103048:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.26611328125 2 590.282397 1178.55024 NaN NaN NaN NaN NaN NaN NaN 164.91 1 159.87 159.37 160.37 -5.0446 0 0 0 0.22943 1 32199 32199 8.7454 2.0222 1 22700 11186 14949 14954 22521 22521 -0.031891880365947145 KGAPLHSRP 9 Unmodified _KGAPLHSRP_ 0 0 0 REV__ENST00000346213.8_1_17:40277044-40277497:-|nuORF REV__ENST00000346213.8_1_17:40277044-40277497:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7787170410156 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 154.22 1 154.22 153.72 154.72 0 0 0 0 0.23508 1 30909 30909 10.074 1.4806 1 + 22701 20754 14950 14955 22522 22522 0.06343715602804423 KGASKGCV 8 Unmodified _KGASKGCV_ 0 0 0 SENP7|p.K545Nfs*11|1|0.49|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant;nc|ENSG00000138468|Q9BQF6-4|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7;nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7 SENP7|p.K545Nfs*11|1|0.49|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant SENP7|p.K545Nfs*11|1|0.49|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.211181640625 2 375.202356 748.390159 NaN NaN NaN NaN NaN NaN NaN 111.2 1 106.97 106.47 107.47 -4.2289 0 0 0 0.2396 1 21400 21400 0.0082765 0 1 22702 4176 14951 14956 22523 22523 0.005899287570287015 KGAYHQIG 8 Unmodified _KGAYHQIG_ 0 0 0 REV__MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant REV__MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2312927246094 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 38.883 1 36.441 35.941 36.941 -2.4419 0 0 0 0.23312 1 6932 6932 6.2058 5.9543 1 + 22703 14276 14952 14957 22524 22524 0.009123624117592044 KGCCCNFCCC 10 Unmodified _KGCCCNFCCC_ 0 0 0 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 542.1406860351562 2 542.153996 1082.29344 NaN NaN NaN NaN NaN NaN NaN 163.62 1 163.62 163.12 164.12 0 0 0 0 0.22588 1 32993 32993 1.6526 1.6526 1 + 22704 14763 14953 14958 22525 22525 -0.24441532444257064 KGCCFEDD 8 Unmodified _KGCCFEDD_ 0 0 0 FAM181B|p.L337*|1|0.51|ENSG00000182103|chr11:82732721-82732721|G/-|frameshift_variant;FAM181B|p.R341Afs*4|1|0.67|ENSG00000182103|chr11:82732709-82732709|G/-|frameshift_variant;ENSG00000182103|ENST00000329203|FAM181B FAM181B|p.L337*|1|0.51|ENSG00000182103|chr11:82732721-82732721|G/-|frameshift_variant FAM181B|p.L337*|1|0.51|ENSG00000182103|chr11:82732721-82732721|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2293395996094 2 458.662403 915.310253 NaN NaN NaN NaN NaN NaN NaN 163.58 1 158.54 158.04 159.04 -5.0446 0 0 0 0.23749 1 31841 31841 0.063987 0.055711 1 22705 6764 14954 14959 22526 22526 -0.15078925699151569 KGCDSCEYARE 11 Unmodified _KGCDSCEYARE_ 0 0 0 REV__ENSG00000121406|ENST00000376233|ZNF549 REV__ENSG00000121406|ENST00000376233|ZNF549 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.759521484375 2 630.752812 1259.49107 NaN NaN NaN NaN NaN NaN NaN 146.4 1 141.72 141.22 142.22 -4.6868 0 0 0 0.23429 1 29034 29034 4.897 1.6157 1 + 22706 15656 14955 14960 22527 22527 -0.1282945211310107 KGCGRRDKIF 10 Unmodified _KGCGRRDKIF_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2571411132812 2 590.324399 1178.63425 NaN NaN NaN NaN NaN NaN NaN 76.99 1 76.99 76.49 77.49 0 0 0 0 0.22588 1 14963 14963 6.7232 0 1 + 22707 17494 14956 14961 22528 22528 0.05207387850941814 KGCMPDRYQF 10 Unmodified _KGCMPDRYQF_ 0 0 0 ENST00000486882.5_1_1:79094613-79107491:+|nuORF;ENSG00000137959|ENST00000370751|IFI44L ENST00000486882.5_1_1:79094613-79107491:+|nuORF ENST00000486882.5_1_1:79094613-79107491:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.77978515625 2 622.781176 1243.5478 NaN NaN NaN NaN NaN NaN NaN 68.545 1 68.545 68.045 69.045 0 0 0 0 0.22588 1 13256 13256 10.074 1.9184 1 22708 4130 14957 14962 22529 22529 -0.06423359765926762 KGCTRCFCF 9 Unmodified _KGCTRCFCF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant;LAMA5|p.A3459Qfs*25|1|0.42|ENSG00000130702|chr20:62310736-62310736|C/-|frameshift_variant;LAMA5|p.L2137Afs*29|1|0.31|ENSG00000130702|chr20:62322110-62322111|-/G|frameshift_variant ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.0748291015625 3 355.487331 1063.44016 0.29136 0.00010357 -0.22301 -7.9277E-05 0.068349 2.4297E-05 355.4871600116205 28.657 0.31549 26.902 26.7 27.016 -1.7552 12 8 2 0 0 0 0.88278 1 4818 4818 1.0715 0.83562 1 572420 22709 3627 14958 14963 22530 22530 -0.08902027901012843 KGCTRCFCF 9 Unmodified _KGCTRCFCF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant;LAMA5|p.A3459Qfs*25|1|0.42|ENSG00000130702|chr20:62310736-62310736|C/-|frameshift_variant;LAMA5|p.L2137Afs*29|1|0.31|ENSG00000130702|chr20:62322110-62322111|-/G|frameshift_variant ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 355.487331 1063.44016 -0.21211 -7.5402E-05 0.11036 3.9233E-05 -0.10174 -3.6169E-05 355.48731526311013 26.992 0.34262 26.992 26.773 27.115 0 0.086298 2.9612E-05 NaN 1.0715 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 976060 22710 3627 14958 14963 -0.08902027901012843 KGCTRCFCF 9 Unmodified _KGCTRCFCF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant;LAMA5|p.A3459Qfs*25|1|0.42|ENSG00000130702|chr20:62310736-62310736|C/-|frameshift_variant;LAMA5|p.L2137Afs*29|1|0.31|ENSG00000130702|chr20:62322110-62322111|-/G|frameshift_variant ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 355.487331 1063.44016 -0.31098 -0.00011055 0.39328 0.0001398 0.082295 2.9255E-05 355.48742752740617 28.82 0.23997 26.824 26.66 26.9 -1.9962 -0.082503 0.00033133 NaN 1.0715 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 398680 22711 3627 14958 14963 -0.08902027901012843 KGDEEEEEE 9 Unmodified _KGDEEEEEE_ 0 0 0 REV__nc|ENSG00000196943|Q86U38-2|NOP9 REV__nc|ENSG00000196943|Q86U38-2|NOP9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7853393554688 2 547.212023 1092.40949 0.32759 0.00017926 -2.939 -0.0016083 -2.6114 -0.001429 547.2128161310766 127.8 0.17235 127.8 127.72 127.89 0 6 4 2 0 0 0 0.87511 1 25248 25248 3.9444 0 1 1755600 + 22712 19288 14959 14964 22531 22531 -0.1330153299968515 KGDIYKTRGGG 11 Unmodified _KGDIYKTRGGG_ 0 0 0 ENST00000560125.1_1_15:69737113-69739281:+|nuORF;ENST00000558303.5_1_15:69737113-69740143:+|nuORF;nc|ENSG00000137807|Q02241-3|KIF23;nc|ENSG00000137807|Q02241-2|KIF23;nc|ENSG00000137807|Q02241|KIF23;ENSG00000137807|ENST00000679126|KIF23 ENST00000560125.1_1_15:69737113-69739281:+|nuORF ENST00000560125.1_1_15:69737113-69739281:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3160400390625 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 173.17 1 168.38 167.88 168.88 -4.7898 0 0 0 0.23087 1 35310 35310 7.609 0.88579 1 22713 4112 14960 14965 22532 22532 0.04019031249231375 KGDMRKCPFY 10 Unmodified _KGDMRKCPFY_ 0 0 0 nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.76123046875 2 622.799368 1243.58418 NaN NaN NaN NaN NaN NaN NaN 121.57 1 116.88 116.38 117.38 -4.6873 0 0 0 0.22583 1 23341 23341 13.906 2.2658 1 22714 2189 14961 14966 22533 22533 -0.027864828691917864 KGDNAVLNTR 10 Unmodified _KGDNAVLNTR_ 0 0 0 REV__SPATA22|p.N194Tfs*30|1|0.2|ENSG00000141255|chr17:3448898-3448898|T/-|frameshift_variant REV__SPATA22|p.N194Tfs*30|1|0.2|ENSG00000141255|chr17:3448898-3448898|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7713012695312 2 544.296362 1086.57817 0.21813 0.00011873 0.024752 1.3473E-05 0.24288 0.0001322 544.2963229698013 14.296 0.20672 14.296 14.179 14.386 0 13 5 3 0 0 0 0.8821 1 2115 2115 10.151 3.9448 1 4724500 + 22715 16615 14962 14967 22534 22534 0.038344582151466966 KGDNAVLNTR 10 Unmodified _KGDNAVLNTR_ 0 0 0 REV__SPATA22|p.N194Tfs*30|1|0.2|ENSG00000141255|chr17:3448898-3448898|T/-|frameshift_variant REV__SPATA22|p.N194Tfs*30|1|0.2|ENSG00000141255|chr17:3448898-3448898|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 544.296362 1086.57817 -0.57055 -0.00031055 0.87551 0.00047654 0.30495 0.00016599 544.2968920575217 15.17 0.30704 13.948 13.826 14.133 -1.2219 -0.13442 0.00049631 NaN 10.151 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2324100 + 22716 16615 14962 14967 0.038344582151466966 KGELPSLRF 9 Unmodified _KGELPSLRF_ 0 0 0 ENST00000482466.5_1_3:37190523-37216082:-|nuORF ENST00000482466.5_1_3:37190523-37216082:-|nuORF ENST00000482466.5_1_3:37190523-37216082:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6847534179688 2 523.803291 1045.59203 NaN NaN NaN NaN NaN NaN NaN 140.34 1 140.34 139.84 140.84 0 0 0 0 0.21844 1 27936 27936 18.146 1.0335 1 22717 10396 14963 14968 22535 22535 0.07105735714230832 KGEMCWSFY 9 Unmodified _KGEMCWSFY_ 0 0 0 REV__ENST00000493170.1_1_1:173684720-173703518:+|nuORF REV__ENST00000493170.1_1_1:173684720-173703518:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3142700195312 2 575.738445 1149.46234 0.087416 5.0329E-05 -3.8109 -0.0021941 -3.7235 -0.0021438 576.2390640846431 46.519 0.2084 43.653 43.588 43.796 -2.8653 6 5 2 0 0 0 0.84208 1 8455 8455 1.6526 0 1 608800 + 22718 22341 14964 14969 22536 22536 -0.10641524951574866 KGEMQKQA 8 Unmodified _KGEMQKQA_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23785400390625 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 67.656 1 64.548 64.048 65.048 -3.1086 0 0 0 0.22674 1 13125 13125 14.838 14.157 1 22719 5659 14965 14970 22537 22537 -0.0031903201407885717 KGERPMYV 8 Unmodified _KGERPMYV_ 0 0 0 REV__ENSG00000115306|ENST00000356805|SPTBN1 REV__ENSG00000115306|ENST00000356805|SPTBN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2550964355469 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 19.484 1 17.848 17.348 18.348 -1.6351 0 0 0 0.20896 1 2942 2942 18.135 1.0221 1 + 22720 15420 14966 14971 22538 22538 0.005578448826327076 KGESLKEVH 9 Unmodified _KGESLKEVH_ 0 0 0 TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B;nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.0150451660156 3 342.857463 1025.55056 0.49352 0.00016921 -0.67491 -0.0002314 -0.18139 -6.2191E-05 342.857190592683 28.521 1.2802 26.565 25.735 27.015 -1.9561 89 36 3 0 0 0 0.87918 1 4990 4990 1.0715 0 1 5124200 22721 3788 14967 14972 22539 22539 0.038805549548897034 KGETDALDI 9 Unmodified _KGETDALDI_ 0 0 0 CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant;nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5;CNTNAP5|p.M432Nfs*7|1|0.35|ENSG00000155052|chr2:124504522-124504523|-/A|frameshift_variant;CNTNAP5|p.R293H|1|0.22|ENSG00000155052|chr2:124446897-124446897|G/A|missense_variant;CNTNAP5|p.L322*|1|0.38|ENSG00000155052|chr2:124474781-124474781|T/-|frameshift_variant;CNTNAP5|p.Q385Kfs*7|2|0.22|ENSG00000155052|chr2:124504380-124504380|C/-|frameshift_variant CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2450256347656 2 481.245472 960.476391 0.065745 3.1639E-05 -0.18938 -9.1138E-05 -0.12364 -5.9499E-05 481.2453850569214 99.907 1.1514 95.774 95.302 96.454 -4.1328 125 32 6 0 0 0 0.02633 1 19542 19542 85.642 7.4921 1 234470000 22722 604 14968 14973 22540 22540 -0.0054283292729451205 KGETDALDI 9 Unmodified _KGETDALDI_ 0 0 0 CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant;nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5;CNTNAP5|p.M432Nfs*7|1|0.35|ENSG00000155052|chr2:124504522-124504523|-/A|frameshift_variant;CNTNAP5|p.R293H|1|0.22|ENSG00000155052|chr2:124446897-124446897|G/A|missense_variant;CNTNAP5|p.L322*|1|0.38|ENSG00000155052|chr2:124474781-124474781|T/-|frameshift_variant;CNTNAP5|p.Q385Kfs*7|2|0.22|ENSG00000155052|chr2:124504380-124504380|C/-|frameshift_variant CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24505615234375 2 481.245472 960.476391 0.19881 9.5676E-05 -0.36213 -0.00017427 -0.16332 -7.8598E-05 481.2452666262255 99.809 1.515 95.819 95.377 96.892 -3.9895 145 43 5 0 0 0 0.039785 1 19100 19100 75.761 4.6272 1 182930000 22723 604 14968 14973 22541 22541 -0.0054283292729451205 KGFDFPGSAR 10 Unmodified _KGFDFPGSAR_ 0 0 0 nc|ENSG00000197857|P15621-2|ZNF44;ENSG00000197857|ENST00000355684|ZNF44;nc|ENSG00000197857|P15621-3|ZNF44;nc|ENSG00000197857|P15621|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2713623046875 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 140.39 1 140.39 139.89 140.89 0 0 0 0 2.8426 1 27948 27948 0.51642 0.48501 1 22724 7404 14969 14974 22542 22542 -0.001803118423140404 KGFDFPGSAR 10 Unmodified _KGFDFPGSAR_ 0 0 0 nc|ENSG00000197857|P15621-2|ZNF44;ENSG00000197857|ENST00000355684|ZNF44;nc|ENSG00000197857|P15621-3|ZNF44;nc|ENSG00000197857|P15621|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.266845703125 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 144.41 1 139.74 139.24 140.24 -4.6694 0 0 0 2.8426 1 28593 28593 0.51642 0.48501 1 22725 7404 14969 14974 22543 22543 -0.001803118423140404 KGFDFPGSAR 10 Unmodified _KGFDFPGSAR_ 0 0 0 nc|ENSG00000197857|P15621-2|ZNF44;ENSG00000197857|ENST00000355684|ZNF44;nc|ENSG00000197857|P15621-3|ZNF44;nc|ENSG00000197857|P15621|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2739868164062 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 144.71 1 140.04 139.54 140.54 -4.6694 0 0 0 2.8426 1 28666 28666 0.20733 0.17592 1 22726 7404 14969 14974 22544 22544 -0.001803118423140404 KGFDFPGSAR 10 Unmodified _KGFDFPGSAR_ 0 0 0 nc|ENSG00000197857|P15621-2|ZNF44;ENSG00000197857|ENST00000355684|ZNF44;nc|ENSG00000197857|P15621-3|ZNF44;nc|ENSG00000197857|P15621|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2776489257812 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 145.78 1 140.67 140.17 141.17 -5.1108 0 0 0 2.8426 1 28180 28180 0.20733 0.17592 1 22727 7404 14969 14974 22545 22545 -0.001803118423140404 KGFDFPGSAR 10 Unmodified _KGFDFPGSAR_ 0 0 0 nc|ENSG00000197857|P15621-2|ZNF44;ENSG00000197857|ENST00000355684|ZNF44;nc|ENSG00000197857|P15621-3|ZNF44;nc|ENSG00000197857|P15621|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2763061523438 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 145.27 1 140.33 139.83 140.83 -4.9445 0 0 0 2.8426 1 28084 28084 0.51642 0.34442 1 22728 7404 14969 14974 22546 22546 -0.001803118423140404 KGFDFPGSAR 10 Unmodified _KGFDFPGSAR_ 0 0 0 nc|ENSG00000197857|P15621-2|ZNF44;ENSG00000197857|ENST00000355684|ZNF44;nc|ENSG00000197857|P15621-3|ZNF44;nc|ENSG00000197857|P15621|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2742919921875 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 145.69 1 140.69 140.19 141.19 -5 0 0 0 2.8426 1 28179 28179 0.51642 0.34442 1 22729 7404 14969 14974 22547 22547 -0.001803118423140404 KGFGMLSVKK 10 Unmodified _KGFGMLSVKK_ 0 0 0 REV__SLCO5A1|p.S411L|1|0.27|ENSG00000137571|chr8:69755450-69755450|G/A|missense_variant REV__SLCO5A1|p.S411L|1|0.27|ENSG00000137571|chr8:69755450-69755450|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.79345703125 2 547.823169 1093.63179 NaN NaN NaN NaN NaN NaN NaN 15.624 1 14.408 13.908 14.908 -1.2159 0 0 0 0.22588 1 2417 2417 3.2813 1.2216 1 + 22730 24653 14970 14975 22548 22548 0.0887153939329437 KGFIEIKPTF 10 Unmodified _KGFIEIKPTF_ 0 0 0 ENSG00000134853|ENST00000257290|PDGFRA;ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA;PDGFRA|p.N780Tfs*17|1|0.45|ENSG00000134853|chr4:54285382-54285382|A/-|frameshift_variant ENSG00000134853|ENST00000257290|PDGFRA ENSG00000134853|ENST00000257290|PDGFRA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2569580078125 2 590.342249 1178.66995 NaN NaN NaN NaN NaN NaN NaN 113.38 1 113.38 112.88 113.88 0 0 0 0 0.22588 1 22294 22294 6.7232 0 1 22731 3877 14971 14976 22549 22549 0.08775748579614628 KGFKEATSHF 10 Unmodified _KGFKEATSHF_ 0 0 0 REV__ENST00000451020.6_1_4:419554-419923:-|nuORF REV__ENST00000451020.6_1_4:419554-419923:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3245849609375 2 576.29583 1150.57711 NaN NaN NaN NaN NaN NaN NaN 140.55 1 140.55 140.05 141.05 0 0 0 0 0.22588 1 27988 27988 10.8 0.72558 1 + 22732 21802 14972 14977 22550 22550 0.007842438462148493 KGFKQRLYY 9 Unmodified _KGFKQRLYY_ 0 0 0 REV__ENSG00000116005|ENST00000433351|PCYOX1 REV__ENSG00000116005|ENST00000433351|PCYOX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2991333007812 2 601.837665 1201.66078 0.38032 0.00022889 -2.8525 -0.0017167 -2.4721 -0.0014878 601.8362951674089 144.76 0.17145 139.82 139.69 139.86 -4.9445 5 4 2 0 0 0 0.60805 1 27958 27958 12.532 3.1484 1 2386700 + 22733 15460 14973 14978 22551 22551 0.06801400013955572 KGFLKWFKP 9 Unmodified _KGFLKWFKP_ 0 0 0 REV__ENST00000327475.10_1_6:38750816-38754639:+|nuORF REV__ENST00000327475.10_1_6:38750816-38754639:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3145141601562 2 575.84222 1149.66989 0.34784 0.0002003 2.2789 0.0013123 2.6267 0.0015126 575.8437155621017 148.71 0.33916 143.65 143.37 143.7 -5.0595 13 9 2 0 0 0 0.6329 1 28805 28805 10.824 2.0785 1 2240800 + 22734 20591 14974 14979 22552 22552 0.10103793370240055 KGFLQKRSLK 10 Unmodified _KGFLQKRSLK_ 0 0 0 ENSG00000204947|ENST00000378061|ZNF425 ENSG00000204947|ENST00000378061|ZNF425 ENSG00000204947|ENST00000378061|ZNF425 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2994384765625 2 602.879865 1203.74518 1.064 0.00064145 -0.39731 -0.00023953 0.66668 0.00040193 603.3807412210438 143.68 1.1814 139.02 138.4 139.58 -4.656 47 33 2 0 0 0 0.90091 1 28389 28389 3.2813 0.54611 1 24064000 22735 7622 14975 14980 22553 22553 0.15145350830675852 KGFSWVGGGRT 11 Unmodified _KGFSWVGGGRT_ 0 0 0 CD93|p.E121Rfs*79|5|0.37|ENSG00000125810|chr20:23085832-23085832|C/-|frameshift_variant CD93|p.E121Rfs*79|5|0.37|ENSG00000125810|chr20:23085832-23085832|C/-|frameshift_variant CD93|p.E121Rfs*79|5|0.37|ENSG00000125810|chr20:23085832-23085832|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.324951171875 2 576.301447 1150.58834 NaN NaN NaN NaN NaN NaN NaN 140.03 1 140.03 139.53 140.53 0 0 0 0 0.22671 1 27857 27857 10.899 0.099449 1 22736 450 14976 14981 22554 22554 0.019070659403723766 KGFSWVGGGRT 11 Unmodified _KGFSWVGGGRT_ 0 0 0 CD93|p.E121Rfs*79|5|0.37|ENSG00000125810|chr20:23085832-23085832|C/-|frameshift_variant CD93|p.E121Rfs*79|5|0.37|ENSG00000125810|chr20:23085832-23085832|C/-|frameshift_variant CD93|p.E121Rfs*79|5|0.37|ENSG00000125810|chr20:23085832-23085832|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3314208984375 2 576.301447 1150.58834 NaN NaN NaN NaN NaN NaN NaN 143.88 1 138.81 138.31 139.31 -5.0671 0 0 0 0.21688 1 27741 27741 14.838 2.5972 1 22737 450 14976 14981 22555 22555 0.019070659403723766 KGFYDVATDPF 11 Unmodified _KGFYDVATDPF_ 0 0 0 REV__nc|ENSG00000011451|O95785|WIZ REV__nc|ENSG00000011451|O95785|WIZ MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7733154296875 2 630.300778 1258.587 0.39946 0.00025178 -0.22545 -0.0001421 0.17401 0.00010968 630.3003953179335 125.7 0.74295 125.7 125.29 126.03 0 30 20 2 0 0 0 0.64855 1 24746 24746 15.248 2.206 1 5069200 + 22738 13937 14977 14982 22556 22556 -0.03194612939068975 KGFYFKEY 8 Unmodified _KGFYFKEY_ 0 0 0 REV__ENST00000261349.8_1_12:12397208-12397271:-|nuORF REV__ENST00000261349.8_1_12:12397208-12397271:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27685546875 2 541.271293 1080.52803 NaN NaN NaN NaN NaN NaN NaN 155.49 1 150.71 150.21 151.21 -4.7791 0 0 0 0.21486 1 30908 30908 9.3474 0.75416 1 + 22739 20171 14978 14983 22557 22557 -0.00901044442730381 KGFYFKEY 8 Unmodified _KGFYFKEY_ 0 0 0 REV__ENST00000261349.8_1_12:12397208-12397271:-|nuORF REV__ENST00000261349.8_1_12:12397208-12397271:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2738037109375 2 541.271293 1080.52803 0.18574 0.00010054 4.4233 0.0023942 4.609 0.0024947 541.2743656117113 147.03 0.27856 141.92 141.68 141.96 -5.1108 9 7 2 0 0 0 8448 1 28422 28422 0.68139 0 1 8023400 + 22740 20171 14978 14983 22558 22558 -0.00901044442730381 KGFYFKEY 8 Unmodified _KGFYFKEY_ 0 0 0 REV__ENST00000261349.8_1_12:12397208-12397271:-|nuORF REV__ENST00000261349.8_1_12:12397208-12397271:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2733764648438 2 541.271293 1080.52803 NaN NaN NaN NaN NaN NaN NaN 161.18 1 155.95 155.45 156.45 -5.2299 0 0 0 0.21486 1 31302 31302 9.3474 0.75416 1 + 22741 20171 14978 14983 22559 22559 -0.00901044442730381 KGGAPPCPL 9 Unmodified _KGGAPPCPL_ 0 0 0 REV__ENST00000357529.7_1_12:8850703-8852541:+|nuORF REV__ENST00000357529.7_1_12:8850703-8852541:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4853515625 1 839.444385 838.437109 0.42738 0.00035877 0.9676 0.00081225 1.395 0.001171 839.4457096411847 165.74 0.20798 160.76 160.7 160.91 -4.9811 6 5 2 0 0 0 0.62102 1 32422 32422 11.64 0.52583 1 24156000 + 22742 20826 14979 14984 22560 22560 0.011427883081410073 KGGASQDHV 9 Unmodified _KGGASQDHV_ 0 0 0 ENST00000533050.5_2_11:126081479-126104922:+|nuORF ENST00000533050.5_2_11:126081479-126104922:+|nuORF ENST00000533050.5_2_11:126081479-126104922:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 300.1517639160156 3 300.150758 897.430444 NaN NaN NaN NaN NaN NaN NaN 111.73 1 107.31 106.81 107.81 -4.4231 0 0 0 0.23508 1 22019 22019 1.0715 0.61312 1 22743 10987 14980 14985 22561 22561 -0.022374333188622586 KGGCGSYGCSQ 11 Unmodified _KGGCGSYGCSQ_ 0 0 0 ENSG00000185940|ENST00000399676|KRTAP5-5 ENSG00000185940|ENST00000399676|KRTAP5-5 ENSG00000185940|ENST00000399676|KRTAP5-5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.68994140625 2 523.705134 1045.39571 NaN NaN NaN NaN NaN NaN NaN 141.03 1 141.03 140.53 141.53 0 0 0 0 0.23324 1 28093 28093 5.7319 1.4026 1 22744 7020 14981 14986 22562 22562 -0.12516760513494773 KGGCQWVRF 9 Unmodified _KGGCQWVRF_ 0 0 0 REV__ENSG00000257594|ENST00000529983|GALNT4 REV__ENSG00000257594|ENST00000529983|GALNT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2631225585938 2 540.774011 1079.53347 0.29583 0.00015998 -1.4125 -0.00076382 -1.1166 -0.00060384 541.2733054468727 137.49 0.35548 137.49 137.23 137.59 0 13 9 2 0 0 0 0.62102 1 27275 27275 11.64 1.5664 1 9178800 + 22745 19872 14982 14987 22563 22563 -0.0031164413189799234 KGGCQWVRF 9 Unmodified _KGGCQWVRF_ 0 0 0 REV__ENSG00000257594|ENST00000529983|GALNT4 REV__ENSG00000257594|ENST00000529983|GALNT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2643432617188 2 540.774011 1079.53347 0.38294 0.00020708 -3.2787 -0.001773 -2.8957 -0.0015659 541.2736072965649 144.25 0.7285 139.3 139.06 139.79 -4.9445 28 20 2 0 0 0 0.54354 1 27850 27850 16.942 7.5949 1 20341000 + 22746 19872 14982 14987 22564 22564 -0.0031164413189799234 KGGCQWVRF 9 Unmodified _KGGCQWVRF_ 0 0 0 REV__ENSG00000257594|ENST00000529983|GALNT4 REV__ENSG00000257594|ENST00000529983|GALNT4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.774011 1079.53347 0.29583 0.00015998 -1.4125 -0.00076382 -1.1166 -0.00060384 541.2733054468727 137.49 0.35548 137.49 137.23 137.59 0 0 0 NaN 11.64 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 9178800 + 22747 19872 14982 14987 -0.0031164413189799234 KGGDDHDDTS 10 Unmodified _KGGDDHDDTS_ 0 0 0 DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1;DIDO1|p.F711Lfs*22|1|0.35|ENSG00000101191|chr20:62896314-62896314|A/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6978759765625 2 523.704699 1045.39485 NaN NaN NaN NaN NaN NaN NaN 140.19 1 140.19 139.69 140.69 0 0 0 0 0.22588 1 27899 27899 3.5965 0.31518 1 22748 837 14983 14988 22565 22565 -0.12603560357183596 KGGDDHDDTS 10 Unmodified _KGGDDHDDTS_ 0 0 0 DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1;DIDO1|p.F711Lfs*22|1|0.35|ENSG00000101191|chr20:62896314-62896314|A/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6923217773438 2 523.704699 1045.39485 NaN NaN NaN NaN NaN NaN NaN 143.86 1 143.86 143.36 144.36 0 0 0 0 0.22588 1 28723 28723 6.7232 0.99131 1 22749 837 14983 14988 22566 22566 -0.12603560357183596 KGGDDHDDTS 10 Unmodified _KGGDDHDDTS_ 0 0 0 DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1;DIDO1|p.F711Lfs*22|1|0.35|ENSG00000101191|chr20:62896314-62896314|A/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6987915039062 2 523.704699 1045.39485 NaN NaN NaN NaN NaN NaN NaN 146.21 1 146.21 145.71 146.71 0 0 0 0 0.22588 1 29231 29231 3.5965 0.31518 1 22750 837 14983 14988 22567 22567 -0.12603560357183596 KGGDDHDDTS 10 Unmodified _KGGDDHDDTS_ 0 0 0 DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1;DIDO1|p.F711Lfs*22|1|0.35|ENSG00000101191|chr20:62896314-62896314|A/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.699951171875 2 523.704699 1045.39485 NaN NaN NaN NaN NaN NaN NaN 88.299 1 84.506 84.006 85.006 -3.7926 0 0 0 0.22588 1 17272 17272 3.5965 0.70727 1 22751 837 14983 14988 22568 22568 -0.12603560357183596 KGGDDHDDTS 10 Unmodified _KGGDDHDDTS_ 0 0 0 DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1;DIDO1|p.F711Lfs*22|1|0.35|ENSG00000101191|chr20:62896314-62896314|A/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7019653320312 2 523.704699 1045.39485 NaN NaN NaN NaN NaN NaN NaN 147.63 1 142.92 142.42 143.42 -4.7095 0 0 0 0.22588 1 29299 29299 5.7319 0.97584 1 22752 837 14983 14988 22569 22569 -0.12603560357183596 KGGDDHDDTS 10 Unmodified _KGGDDHDDTS_ 0 0 0 DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1;DIDO1|p.F711Lfs*22|1|0.35|ENSG00000101191|chr20:62896314-62896314|A/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6980590820312 2 523.704699 1045.39485 NaN NaN NaN NaN NaN NaN NaN 143.49 1 138.46 137.96 138.96 -5.0261 0 0 0 0.22588 1 27662 27662 9.3831 3.6513 1 22753 837 14983 14988 22570 22570 -0.12603560357183596 KGGDDHDDTS 10 Unmodified _KGGDDHDDTS_ 0 0 0 DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1;DIDO1|p.F711Lfs*22|1|0.35|ENSG00000101191|chr20:62896314-62896314|A/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.69873046875 2 523.704699 1045.39485 NaN NaN NaN NaN NaN NaN NaN 148.6 1 143.55 143.05 144.05 -5.0595 0 0 0 0.22588 1 28785 28785 5.7319 0.97584 1 22754 837 14983 14988 22571 22571 -0.12603560357183596 KGGDIVYVVDD 11 Unmodified _KGGDIVYVVDD_ 0 0 0 REV__nc|ENSG00000174953|Q9H2U1-3|DHX36 REV__nc|ENSG00000174953|Q9H2U1-3|DHX36 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2615356445312 2 590.298236 1178.58192 NaN NaN NaN NaN NaN NaN NaN 140.75 1 135.89 135.39 136.39 -4.8678 0 0 0 0.22914 1 27146 27146 8.9762 0.23084 1 + 22755 18443 14984 14989 22572 22572 -0.00022916801685823884 KGGDQTKQTQN 11 Unmodified _KGGDQTKQTQN_ 0 0 0 REV__nc|ENSG00000148358|Q5VW38|GPR107 REV__nc|ENSG00000148358|Q5VW38|GPR107 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2725219726562 2 602.799466 1203.58438 1.0666 0.00064294 3.0585 0.0018436 4.125 0.0024866 602.802227028546 143.32 0.45544 138.66 138.34 138.79 -4.656 15 12 2 0 0 0 0.93546 1 28300 28300 2.4985 1.169 1 5589100 + 22756 24090 14985 14990 22573 22573 -0.009270683439808636 KGGFCAVKIC 10 Unmodified _KGGFCAVKIC_ 0 0 0 ENST00000401957.6_1_7:22159717-22159825:-|nuORF ENST00000401957.6_1_7:22159717-22159825:-|nuORF ENST00000401957.6_1_7:22159717-22159825:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 513.5370483398438 2 513.267173 1024.51979 NaN NaN NaN NaN NaN NaN NaN 164.53 1 159.49 158.99 159.99 -5.0446 0 0 0 0.22588 1 32097 32097 10.074 0.72649 1 22757 9515 14986 14991 22574 22574 0.00851362044659254 KGGFKLLLGKV 11 Unmodified _KGGFKLLLGKV_ 0 0 0 REV__ENST00000448864.5_1_3:197677096-197677129:+|nuORF REV__ENST00000448864.5_1_3:197677096-197677129:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 580.2708740234375 2 580.381709 1158.74886 NaN NaN NaN NaN NaN NaN NaN 165.4 1 160.61 160.11 161.11 -4.7898 0 0 0 0.22632 1 33122 33122 0.11104 0.10509 1 + 22758 21782 14987 14992 22575 22575 0.17584020604545003 KGGFLPPEEI 10 Unmodified _KGGFLPPEEI_ 0 0 0 nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7837524414062 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 149.94 1 149.94 149.44 150.44 0 0 0 0 0.22576 1 30014 30014 14.838 0.25658 1 22759 1741 14988 14993 22576 22576 0.03634609757477847 KGGFWRIDPQ 10 Unmodified _KGGFWRIDPQ_ 0 0 0 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2781982421875 2 602.317097 1202.61964 NaN NaN NaN NaN NaN NaN NaN 149.36 1 144.24 143.74 144.74 -5.1204 0 0 0 0.22576 1 28940 28940 14.838 7.549 1 22760 3571 14989 14994 22577 22577 0.026436389744503686 KGGFYFGQWN 10 Unmodified _KGGFYFGQWN_ 0 0 0 REV__nc|ENSG00000166391|Q3SYC2-3|MOGAT2 REV__nc|ENSG00000166391|Q3SYC2-3|MOGAT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.284423828125 2 602.282723 1202.55089 0.29616 0.00017837 1.7416 0.001049 2.0378 0.0012273 602.283691041516 15.712 0.13857 15.712 15.641 15.779 0 6 3 2 0 0 0 0.74842 1 2417 2417 6.2058 2.2614 1 227450 + 22761 24149 14990 14995 22578 22578 -0.04228025325210183 KGGGGGAK 8 Unmodified _KGGGGGAK_ 0 0 0 REV__ENSG00000105675|ENST00000262623|ATP4A REV__ENSG00000105675|ENST00000262623|ATP4A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7576904296875 1 631.3522 630.344923 0.58413 0.00036879 -2.1134 -0.0013343 -1.5292 -0.00096548 631.3496294712717 149.4 0.10463 144.28 144.21 144.32 -5.1204 4 2 2 0 0 0 0.97173 1 28935 28935 4.3292 0 1 1067400 + 22762 15009 14991 14996 22579 22579 0.01496446286137143 KGGGGGSC 8 Unmodified _KGGGGGSC_ 0 0 0 REV__LY86|p.F15C|1|0.2|ENSG00000112799|chr6:6588778-6588778|T/G|missense_variant REV__LY86|p.F15C|1|0.2|ENSG00000112799|chr6:6588778-6588778|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7638549804688 1 622.261336 621.254059 0.88363 0.00054985 -3.0879 -0.0019215 -2.2042 -0.0013716 622.2570027762198 69.424 0.21497 66.244 66.153 66.368 -3.1796 8 5 2 0 0 0 1.0271 1 13482 13482 0 0 1 1183000 + 22763 15315 14992 14997 22580 22580 -0.07171765753651016 KGGGGPGA 8 Unmodified _KGGGGPGA_ 0 0 0 REV__ENSG00000153879|ENST00000284000|CEBPG REV__ENSG00000153879|ENST00000284000|CEBPG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2980346679688 1 600.31 599.302724 1.0059 0.00060385 -1.0618 -0.00063738 -0.055857 -3.3532E-05 600.3082427644182 139.68 0.17635 135.04 134.93 135.1 -4.6439 8 4 3 0 0 0 0.83982 1 27588 27588 2.5775 0 1 836600 + 22764 17159 14993 14998 22581 22581 -0.012955291222397136 KGGIWEQCNEP 11 Unmodified _KGGIWEQCNEP_ 0 0 0 REV__ENSG00000198265|ENST00000358691|HELZ REV__ENSG00000198265|ENST00000358691|HELZ MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7490234375 2 630.787512 1259.56047 0.3137 0.00019788 3.2799 0.0020689 3.5936 0.0022668 630.7893535518511 139.8 0.20869 134.85 134.67 134.88 -4.952 6 5 2 0 0 0 0.89764 1 26899 26899 8.1555 1.0538 1 1047700 + 22765 19400 14994 14999 22582 22582 -0.058926251020466225 KGGIYMLDF 9 Unmodified _KGGIYMLDF_ 0 0 0 REV__nc|ENSG00000168743|Q6UXI9-2|NPNT REV__nc|ENSG00000168743|Q6UXI9-2|NPNT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2645263671875 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 168.93 1 164.14 163.64 164.64 -4.7898 0 0 0 0.23508 1 34179 34179 10.824 2.9138 1 + 22766 18048 14995 15000 22583 22583 -0.0038040417741740384 KGGIYMLDF 9 Unmodified _KGGIYMLDF_ 0 0 0 REV__nc|ENSG00000168743|Q6UXI9-2|NPNT REV__nc|ENSG00000168743|Q6UXI9-2|NPNT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2633666992188 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 169.38 1 164.59 164.09 165.09 -4.7898 0 0 0 0.23508 1 34309 34309 10.824 0.75 1 + 22767 18048 14995 15000 22584 22584 -0.0038040417741740384 KGGKSKKLERL 11 Unmodified _KGGKSKKLERL_ 0 0 0 REV__ENSG00000103343|ENST00000268655|ZNF174 REV__ENSG00000103343|ENST00000268655|ZNF174 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7649536132812 2 622.395879 1242.7772 0.46794 0.00029124 3.4013 0.002117 3.8693 0.0024082 622.9001836523638 140.97 0.20541 136.11 136.05 136.25 -4.8678 6 5 2 0 0 0 0.96102 1 27200 27200 5.7319 3.2334 1 1667900 + 22768 14877 14996 15001 22585 22585 0.16552718513867148 KGGLDKARHL 10 Unmodified _KGGLDKARHL_ 0 0 0 ENST00000324731.7_1_9:34917810-34918290:+|nuORF ENST00000324731.7_1_9:34917810-34918290:+|nuORF ENST00000324731.7_1_9:34917810-34918290:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7884521484375 2 547.825089 1093.63563 NaN NaN NaN NaN NaN NaN NaN 11.877 1 10.747 10.247 11.247 -1.1293 0 0 0 0.22588 1 1431 1431 3.5965 0 1 22769 8730 14997 15002 22586 22586 0.0925534521136342 KGGLFRQLY 9 Unmodified _KGGLFRQLY_ 0 0 0 REV__nc|ENSG00000166169|Q9UGP5-2|POLL REV__nc|ENSG00000166169|Q9UGP5-2|POLL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.267822265625 2 541.311284 1080.60801 NaN NaN NaN NaN NaN NaN NaN 135.13 1 135.13 134.63 135.63 0 0 0 0 0.22251 1 26763 26763 16.942 3.4344 1 + 22770 24148 14998 15003 22587 22587 0.07093441951133173 KGGLKKKPLL 10 Unmodified _KGGLKKKPLL_ 0 0 0 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.28271484375 2 541.376426 1080.7383 0.22735 0.00012308 1.1285 0.00061093 1.3558 0.00073401 541.8795635852987 136.12 0.2081 131.48 131.36 131.57 -4.6399 8 5 3 0 0 0 0.91149 1 26854 26854 3.5965 1.5367 1 1245300 22771 5633 14999 15004 22588 22588 0.20116037950128884 KGGLKKKPLL 10 Unmodified _KGGLKKKPLL_ 0 0 0 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2666015625 2 541.376426 1080.7383 NaN NaN NaN NaN NaN NaN NaN 157.4 1 152.12 151.62 152.62 -5.2854 0 0 0 0.22588 1 30544 30544 3.5965 1.5367 1 22772 5633 14999 15004 22589 22589 0.20116037950128884 KGGMRGGG 8 Unmodified _KGGMRGGG_ 0 0 0 REV__ENST00000369304.7_1_1:145524962-145527628:+|nuORF REV__ENST00000369304.7_1_1:145524962-145527628:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 718.9818115234375 1 719.361718 718.354442 0.72684 0.00052286 2.1373 0.0015375 2.8642 0.0020604 719.3610924106048 170.55 0.17323 165.68 165.57 165.74 -4.873 5 4 2 0 0 0 1.0254 1 33740 33740 2.3027 0 1 2117000 + 22773 20957 15000 15005 22590 22590 -0.016001086999722247 KGGNRRYCPIP 11 Unmodified _KGGNRRYCPIP_ 0 0 0 EHHADH|p.R553G|1|0.48|ENSG00000113790|chr3:185192741-185192741|T/C|missense_variant EHHADH|p.R553G|1|0.48|ENSG00000113790|chr3:185192741-185192741|T/C|missense_variant EHHADH|p.R553G|1|0.48|ENSG00000113790|chr3:185192741-185192741|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7787475585938 2 630.835131 1259.65571 NaN NaN NaN NaN NaN NaN NaN 136.68 1 131.78 131.28 132.28 -4.8987 0 0 0 0.23379 1 26270 26270 5.2969 0.39987 1 22774 924 15001 15006 22591 22591 0.036267728796701704 KGGPEGATTRL 11 Unmodified _KGGPEGATTRL_ 0 0 0 EPHX2|p.L183Wfs*8|5|0.21|ENSG00000120915|chr8:27506876-27506876|T/-|frameshift_variant;ENST00000520623.5_1_8:27348689-27396319:+|nuORF;EPHX2|p.R516Gfs*19|1|0.17|ENSG00000120915|chr8:27544198-27544198|A/-|frameshift_variant;ENSG00000120915|ENST00000521400|EPHX2 EPHX2|p.L183Wfs*8|5|0.21|ENSG00000120915|chr8:27506876-27506876|T/-|frameshift_variant EPHX2|p.L183Wfs*8|5|0.21|ENSG00000120915|chr8:27506876-27506876|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7906494140625 2 543.798737 1085.58292 NaN NaN NaN NaN NaN NaN NaN 144.92 1 139.97 139.47 140.47 -4.9445 0 0 0 0.22683 1 28005 28005 10.8 0 1 22775 3162 15002 15007 22592 22592 0.0435534235787145 KGGPGDERMQE 11 Unmodified _KGGPGDERMQE_ 0 0 0 MAML3|p.W1127R|1|0.11|ENSG00000196782|chr4:139719361-139719361|A/T|missense_variant MAML3|p.W1127R|1|0.11|ENSG00000196782|chr4:139719361-139719361|A/T|missense_variant MAML3|p.W1127R|1|0.11|ENSG00000196782|chr4:139719361-139719361|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2783813476562 2 602.274769 1202.53499 NaN NaN NaN NaN NaN NaN NaN 150.67 1 145.47 144.97 145.97 -5.1994 0 0 0 0.23018 1 29197 29197 8.1555 0.8663 1 22776 12106 15003 15008 22593 22593 -0.05818099624457318 KGGPGNRQRL 10 Unmodified _KGGPGNRQRL_ 0 0 0 ENST00000424846.3_1_19:53945218-53945269:+|nuORF ENST00000424846.3_1_19:53945218-53945269:+|nuORF ENST00000424846.3_1_19:53945218-53945269:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2705078125 2 541.812513 1081.61047 0.36274 0.00019654 -3.0669 -0.0016617 -2.7042 -0.0014652 542.3123813024241 155.08 0.10944 150.3 150.23 150.34 -4.7791 4 2 2 0 0 0 0.84281 1 30825 30825 13.906 0 1 585440 22777 9708 15004 15009 22594 22594 0.07293290408802022 KGGPRMQRGG 10 Unmodified _KGGPRMQRGG_ 0 0 0 ENST00000557457.1_2_14:105406809-105420235:-|nuORF ENST00000557457.1_2_14:105406809-105420235:-|nuORF ENST00000557457.1_2_14:105406809-105420235:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2689208984375 2 522.279992 1042.54543 NaN NaN NaN NaN NaN NaN NaN 144.64 1 139.69 139.19 140.19 -4.9445 0 0 0 0.22588 1 27942 27942 5.7319 0.43497 1 22778 11257 15005 15010 22595 22595 0.025859726113139914 KGGPWEFNLR 10 Unmodified _KGGPWEFNLR_ 0 0 0 MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1 MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2772827148438 2 602.317097 1202.61964 NaN NaN NaN NaN NaN NaN NaN 154.54 1 149.76 149.26 150.26 -4.7791 0 0 0 0.22588 1 30718 30718 8.7454 0.83525 1 22779 2672 15006 15011 22596 22596 0.026436389744503686 KGGQVAQP 8 Unmodified _KGGQVAQP_ 0 0 0 REV__ENSG00000122033|ENST00000381120|MTIF3 REV__ENSG00000122033|ENST00000381120|MTIF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3992309570312 1 784.431178 783.423902 0.67966 0.00053314 2.8348 0.0022237 3.5144 0.0027568 784.4345807885301 165.71 0.10091 160.76 160.7 160.8 -4.9484 4 2 2 0 0 0 0.73936 1 32401 32401 8.5933 0 1 13064000 + 22780 15673 15007 15012 22597 22597 0.023526735204200122 KGGRDKPVDD 10 Unmodified _KGGRDKPVDD_ 0 0 0 REV__ENSG00000205832|ENST00000444310|C16orf96 REV__ENSG00000205832|ENST00000444310|C16orf96 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7780151367188 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 145.04 1 139.97 139.47 140.47 -5.0671 0 0 0 0.22588 1 28011 28011 9.3831 0.78985 1 + 22781 19602 15008 15013 22598 22598 0.0071846546118194965 KGGRPPCP 8 Unmodified _KGGRPPCP_ 0 0 0 ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3698120117188 1 811.424319 810.417042 0.67956 0.00055141 2.378 0.0019296 3.0575 0.002481 811.4264339814299 166.73 0.2072 161.78 161.61 161.82 -4.9484 7 5 2 0 0 0 1.0147 1 32657 32657 5.2307 4.6292 1 12990000 22782 8229 15009 15014 22599 22599 0.004250373681998099 KGGRRKGKR 9 Unmodified _KGGRRKGKR_ 0 0 0 ENST00000335934.8_1_2:24307179-24307821:-|nuORF ENST00000335934.8_1_2:24307179-24307821:-|nuORF ENST00000335934.8_1_2:24307179-24307821:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2764892578125 2 521.838865 1041.66318 0.34829 0.00018175 -3.0158 -0.0015738 -2.6675 -0.001392 522.8388591769149 143.97 0.13983 139.02 138.96 139.1 -4.9445 8 3 3 0 0 0 0.87511 1 27804 27804 1.6526 0 1 1707900 22783 8803 15010 15015 22600 22600 0.14401293262267245 KGGRRRLPVL 10 Unmodified _KGGRRRLPVL_ 0 0 0 ENST00000523202.5_1_8:28242642-28242861:-|nuORF ENST00000523202.5_1_8:28242642-28242861:-|nuORF ENST00000523202.5_1_8:28242642-28242861:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3179931640625 2 576.377823 1150.74109 NaN NaN NaN NaN NaN NaN NaN 133.78 1 133.78 133.28 134.28 0 0 0 0 0.22588 1 26469 26469 3.5965 1.5367 1 22784 10868 15011 15016 22601 22601 0.17175306127637668 KGGRRRLPVL 10 Unmodified _KGGRRRLPVL_ 0 0 0 ENST00000523202.5_1_8:28242642-28242861:-|nuORF ENST00000523202.5_1_8:28242642-28242861:-|nuORF ENST00000523202.5_1_8:28242642-28242861:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3257446289062 2 576.377823 1150.74109 NaN NaN NaN NaN NaN NaN NaN 170.32 1 165.54 165.04 166.04 -4.7898 0 0 0 0.22588 1 34559 34559 6.2058 2.6093 1 22785 10868 15011 15016 22602 22602 0.17175306127637668 KGGRRRLPVL 10 Unmodified _KGGRRRLPVL_ 0 0 0 ENST00000523202.5_1_8:28242642-28242861:-|nuORF ENST00000523202.5_1_8:28242642-28242861:-|nuORF ENST00000523202.5_1_8:28242642-28242861:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3125610351562 2 576.377823 1150.74109 NaN NaN NaN NaN NaN NaN NaN 145.28 1 140.21 139.71 140.71 -5.0671 0 0 0 0.22588 1 28067 28067 3.5965 1.5367 1 22786 10868 15011 15016 22603 22603 0.17175306127637668 KGGRWAQDY 9 Unmodified _KGGRWAQDY_ 0 0 0 REV__ENSG00000100603|ENST00000261531|SNW1 REV__ENSG00000100603|ENST00000261531|SNW1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2723388671875 2 540.764697 1079.51484 0.34461 0.00018635 -3.2058 -0.0017336 -2.8612 -0.0015472 540.7624589606538 140.2 0.10611 135.35 135.3 135.41 -4.8492 4 2 2 0 0 0 0.62102 1 27038 27038 11.64 2.2572 1 628350 + 22787 14726 15012 15017 22604 22604 -0.0217348250212126 KGGSGPGA 8 Unmodified _KGGSGPGA_ 0 0 0 REV__nc|ENSG00000125733|Q15642-3|TRIP10 REV__nc|ENSG00000125733|Q15642-3|TRIP10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.759521484375 1 630.320565 629.313289 0.71813 0.00045265 -0.96696 -0.0006095 -0.24883 -0.00015684 630.3209895542709 164.24 0.13333 159.18 159.07 159.2 -5.0648 5 3 2 0 0 0 1.0254 1 31996 31996 2.3027 0 1 7705000 + 22788 24025 15013 15018 22605 22605 -0.016195464678162352 KGGSNKKLSY 10 Unmodified _KGGSNKKLSY_ 0 0 0 REV__ENST00000265085.9_1_5:173315567-173315726:+|nuORF REV__ENST00000265085.9_1_5:173315567-173315726:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.278564453125 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 149.48 1 149.48 148.98 149.98 0 0 0 0 0.22588 1 29925 29925 10.824 0.75 1 + 22789 20240 15014 15019 22606 22606 0.055685303633026706 KGGSNKKLSY 10 Unmodified _KGGSNKKLSY_ 0 0 0 REV__ENST00000265085.9_1_5:173315567-173315726:+|nuORF REV__ENST00000265085.9_1_5:173315567-173315726:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2847290039062 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 149.51 1 149.51 149.01 150.01 0 0 0 0 0.22583 1 29933 29933 13.906 2.4113 1 + 22790 20240 15014 15019 22607 22607 0.055685303633026706 KGGTKLEKTIK 11 Unmodified _KGGTKLEKTIK_ 0 0 0 REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8 REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3015747070312 2 601.876988 1201.73942 1.0889 0.00065539 4.2684 0.002569 5.3573 0.0032244 601.8799142799685 146.02 0.17448 141.34 141.23 141.4 -4.6868 6 4 2 0 0 0 0.96058 1 28934 28934 4.5289 0 1 3574800 + 22791 24220 15015 15020 22608 22608 0.1466220752836307 KGGVLAQI 8 Unmodified _KGGVLAQI_ 0 0 0 ENSG00000157335|ENST00000541793|CLEC18C;ENSG00000157322|ENST00000288040|CLEC18A;ENSG00000140839|ENST00000682950|CLEC18B;nc|ENSG00000140839|Q6UXF7|CLEC18B ENSG00000157335|ENST00000541793|CLEC18C ENSG00000157335|ENST00000541793|CLEC18C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.39501953125 1 785.487965 784.480688 0.3776 0.0002966 3.107 0.0024405 3.4846 0.0027371 785.4918081289001 152.38 0.10587 147.15 147.07 147.18 -5.2365 4 2 2 0 0 0 0.73936 1 29544 29544 8.5933 0 1 1034900 22792 4329 15016 15021 22609 22609 0.0798272107693947 KGGWAPAAQGT 11 Unmodified _KGGWAPAAQGT_ 0 0 0 REV__ENST00000604081.1_1_12:54388338-54389007:-|nuORF REV__ENST00000604081.1_1_12:54388338-54389007:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.269775390625 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 20.358 1 18.723 18.223 19.223 -1.6351 0 0 0 0.22501 1 3130 3130 12.241 0 1 + 22793 23440 15017 15022 22610 22610 3.401640651645721E-05 KGHETTGHT 9 Unmodified _KGHETTGHT_ 0 0 0 ENST00000529012.1_1_11:111795026-111796920:+|nuORF;ENSG00000149300|ENST00000278601|C11orf52;ENST00000527286.5_1_11:111789765-111796920:+|nuORF ENST00000529012.1_1_11:111795026-111796920:+|nuORF ENST00000529012.1_1_11:111795026-111796920:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1595458984375 3 323.157912 966.451907 NaN NaN NaN NaN NaN NaN NaN 111.24 1 107.01 106.51 107.51 -4.2289 0 0 0 0.23508 1 21408 21408 1.0715 0 1 22794 4785 15018 15023 22611 22611 -0.032660482901405885 KGHLLALCI 9 Unmodified _KGHLLALCI_ 0 0 0 REV__sp|P09716|US17_HCMVAUncharacterizedproteinHVLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US17PE=3SV=1 REV__sp|P09716|US17_HCMVAUncharacterizedproteinHVLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US17PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.20367431640625 3 323.196762 966.568457 NaN NaN NaN NaN NaN NaN NaN 93.412 1 89.421 88.921 89.921 -3.9907 0 0 0 0.23508 1 18296 18296 1.0715 0 1 + 22795 24673 15019 15024 22612 22612 0.08383598676039128 KGHPACEPE 9 Unmodified _KGHPACEPE_ 0 0 0 ENST00000502915.1_1_4:139481866-139482694:+|nuORF ENST00000502915.1_1_4:139481866-139482694:+|nuORF ENST00000502915.1_1_4:139481866-139482694:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1464538574219 3 323.148248 966.422915 NaN NaN NaN NaN NaN NaN NaN 110.43 1 105.94 105.44 106.44 -4.4915 0 0 0 0.23508 1 21198 21198 0.96228 0.26461 1 22796 10636 15020 15025 22613 22613 -0.06163908910787086 KGHPACEPE 9 Unmodified _KGHPACEPE_ 0 0 0 ENST00000502915.1_1_4:139481866-139482694:+|nuORF ENST00000502915.1_1_4:139481866-139482694:+|nuORF ENST00000502915.1_1_4:139481866-139482694:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.14666748046875 3 323.148248 966.422915 NaN NaN NaN NaN NaN NaN NaN 110.81 1 106.32 105.82 106.82 -4.4915 0 0 0 0.23508 1 21271 21271 0.96228 0.26461 1 22797 10636 15020 15025 22614 22614 -0.06163908910787086 KGHPACEPE 9 Unmodified _KGHPACEPE_ 0 0 0 ENST00000502915.1_1_4:139481866-139482694:+|nuORF ENST00000502915.1_1_4:139481866-139482694:+|nuORF ENST00000502915.1_1_4:139481866-139482694:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1465759277344 3 323.148248 966.422915 NaN NaN NaN NaN NaN NaN NaN 110.4 1 106.17 105.67 106.67 -4.2289 0 0 0 0.23508 1 21249 21249 0.96228 0.26461 1 22798 10636 15020 15025 22615 22615 -0.06163908910787086 KGHRRVVT 8 Unmodified _KGHRRVVT_ 0 0 0 NCOR2|p.Q2127R|1|0.12|ENSG00000196498|chr12:124335166-124335166|T/C|missense_variant NCOR2|p.Q2127R|1|0.12|ENSG00000196498|chr12:124335166-124335166|T/C|missense_variant NCOR2|p.Q2127R|1|0.12|ENSG00000196498|chr12:124335166-124335166|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.1972961425781 3 318.198154 951.572632 NaN NaN NaN NaN NaN NaN NaN 128.79 1 124.16 123.66 124.66 -4.6292 0 0 0 0.21486 1 25391 25391 1.4819 0 1 22799 12679 15021 15026 22616 22616 0.09490824213980886 KGHRSQHHHH 10 Unmodified _KGHRSQHHHH_ 0 0 0 REV__DLGAP3|p.P280Lfs*20|1|0.38|ENSG00000116544|chr1:34904545-34904545|G/-|frameshift_variant REV__DLGAP3|p.P280Lfs*20|1|0.38|ENSG00000116544|chr1:34904545-34904545|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7682495117188 2 630.81391 1259.61327 0.29515 0.00018619 -1.7948 -0.0011322 -1.4996 -0.00094598 630.8126191087067 25.089 0.21047 23.554 23.469 23.68 -1.5342 7 5 2 0 0 0 0.72406 1 4121 4121 8.7454 1.1365 1 533060 + 22800 13693 15022 15027 22617 22617 -0.006154414136972264 KGHRSQHHHH 10 Unmodified _KGHRSQHHHH_ 0 0 0 REV__DLGAP3|p.P280Lfs*20|1|0.38|ENSG00000116544|chr1:34904545-34904545|G/-|frameshift_variant REV__DLGAP3|p.P280Lfs*20|1|0.38|ENSG00000116544|chr1:34904545-34904545|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7796630859375 2 630.81391 1259.61327 -0.19558 -0.00012338 -1.6083 -0.0010145 -1.8039 -0.0011379 630.8128052136861 23.35 0.30743 21.562 21.392 21.699 -1.7886 14 8 2 0 0 0 0.75133 1 3717 3717 5.2969 2.3016 1 897880 + 22801 13693 15022 15027 22618 22618 -0.006154414136972264 KGHRSQHHHH 10 Unmodified _KGHRSQHHHH_ 0 0 0 REV__DLGAP3|p.P280Lfs*20|1|0.38|ENSG00000116544|chr1:34904545-34904545|G/-|frameshift_variant REV__DLGAP3|p.P280Lfs*20|1|0.38|ENSG00000116544|chr1:34904545-34904545|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 630.81391 1259.61327 0.29515 0.00018619 -1.7948 -0.0011322 -1.4996 -0.00094598 630.8126191087067 25.089 0.21047 23.554 23.469 23.68 -1.5342 0.013658 0.00025286 NaN 8.7454 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 533060 + 22802 13693 15022 15027 -0.006154414136972264 KGHRSQHHHH 10 Unmodified _KGHRSQHHHH_ 0 0 0 REV__DLGAP3|p.P280Lfs*20|1|0.38|ENSG00000116544|chr1:34904545-34904545|G/-|frameshift_variant REV__DLGAP3|p.P280Lfs*20|1|0.38|ENSG00000116544|chr1:34904545-34904545|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 630.81391 1259.61327 0.10198 6.4331E-05 -2.3871 -0.0015058 -2.2851 -0.0014415 630.8122080794234 25.38 0.24104 23.527 23.364 23.605 -1.8534 -0.013658 -0.00049441 NaN 8.7454 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 389530 + 22803 13693 15022 15027 -0.006154414136972264 KGHSLYSRP 9 Unmodified _KGHSLYSRP_ 0 0 0 ENST00000273153.9_1_3:39183524-39183809:-|nuORF ENST00000273153.9_1_3:39183524-39183809:-|nuORF ENST00000273153.9_1_3:39183524-39183809:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2628173828125 2 522.78289 1043.55123 0.36388 0.00019023 4.3829 0.0022913 4.7468 0.0024816 522.7865174787553 145.72 0.17065 140.72 140.64 140.81 -5 6 4 2 0 0 0 0.81703 1 28174 28174 10.074 3.3508 1 1311400 22804 8418 15023 15028 22619 22619 0.031193943946163927 KGHVEPGED 9 Unmodified _KGHVEPGED_ 0 0 0 ENSG00000164978|ENST00000379158|NUDT2;NUDT2|p.T90Qfs*9|1|0.13|ENSG00000164978|chr9:34343261-34343261|A/-|frameshift_variant ENSG00000164978|ENST00000379158|NUDT2 ENSG00000164978|ENST00000379158|NUDT2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.15411376953125 3 323.154168 966.440674 NaN NaN NaN NaN NaN NaN NaN 121.57 1 117.04 116.54 117.54 -4.5305 0 0 0 0.23508 1 23406 23406 1.0715 0 1 22805 5584 15024 15029 22620 22620 -0.04388870384286747 KGIKGDSG 8 Unmodified _KGIKGDSG_ 0 0 0 ENSG00000197565|ENST00000334504|COL4A6;nc|ENSG00000197565|Q14031|COL4A6;COL4A6|p.G611Afs*127|1|0.46|ENSG00000197565|chrX:108187220-108187220|T/-|frameshift_variant;COL4A6|p.G867Rfs*77|1|0.35|ENSG00000197565|chrX:108176931-108176932|-/T|frameshift_variant ENSG00000197565|ENST00000334504|COL4A6 ENSG00000197565|ENST00000334504|COL4A6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2113037109375 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 142.3 1 142.3 141.8 142.8 0 0 0 0 0.23782 1 28371 28371 0.62683 0.62683 1 22806 7380 15025 15030 22621 22621 0.01812967283535727 KGIKVYRLNI 10 Unmodified _KGIKVYRLNI_ 0 0 0 tr|U7STN5|U7STN5_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01128PE=3SV=1 tr|U7STN5|U7STN5_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01128PE=3SV=1 tr|U7STN5|U7STN5_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01128PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3016967773438 2 602.38224 1202.74993 NaN NaN NaN NaN NaN NaN NaN 165.08 1 160.1 159.6 160.6 -4.9811 0 0 0 0.22588 1 32240 32240 6.2058 0.47393 1 22807 26163 15026 15031 22622 22622 0.15666234973468818 KGILIFILAV 10 Unmodified _KGILIFILAV_ 0 0 0 tr|U7T249|U7T249_FUSNUDUF4878domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00547PE=4SV=1 tr|U7T249|U7T249_FUSNUDUF4878domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00547PE=4SV=1 tr|U7T249|U7T249_FUSNUDUF4878domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00547PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7860107421875 2 543.867903 1085.72125 NaN NaN NaN NaN NaN NaN NaN 173.2 1 168.41 167.91 168.91 -4.7898 0 0 0 0.22588 1 35317 35317 3.5965 0 1 22808 26341 15027 15032 22623 22623 0.18182117344326798 KGILSLFRL 9 Unmodified _KGILSLFRL_ 0 0 0 ENST00000339431.8_1_7:102574289-102574325:+|nuORF ENST00000339431.8_1_7:102574289-102574325:+|nuORF ENST00000339431.8_1_7:102574289-102574325:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6968383789062 2 523.839677 1045.6648 0.34996 0.00018332 -3.8945 -0.0020401 -3.5446 -0.0018568 524.339399875359 144.15 0.17796 139.2 139.13 139.31 -4.9445 6 4 2 0 0 0 0.6215 1 27855 27855 0.12781 0 1 4381300 22809 8837 15028 15033 22624 22624 0.14379489507655308 KGIQRRWERRV 11 Unmodified _KGIQRRWERRV_ 0 0 0 ENST00000378204.6_1_8:119123393-119123786:-|nuORF ENST00000378204.6_1_8:119123393-119123786:-|nuORF ENST00000378204.6_1_8:119123393-119123786:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3728637695312 2 742.439475 1482.8644 NaN NaN NaN NaN NaN NaN NaN 164.88 1 164.88 164.38 165.38 0 0 0 0 0.2367 1 33393 33393 2.9952 0.26005 1 22810 9277 15029 15034 22625 22625 0.14227937508076138 KGIRRLRRRHL 11 Unmodified _KGIRRLRRRHL_ 0 0 0 ENST00000554578.5_1_12:57637929-57638930:-|nuORF;ENST00000554003.1_1_12:57638697-57638930:-|nuORF ENST00000554578.5_1_12:57637929-57638930:-|nuORF ENST00000554578.5_1_12:57637929-57638930:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 730.9263916015625 2 730.979102 1459.94365 NaN NaN NaN NaN NaN NaN NaN 168.52 1 163.73 163.23 164.23 -4.7898 0 0 0 0.23698 1 34070 34070 1.3295 0.9789 1 22811 11221 15030 15035 22626 22626 0.23207629252920015 KGIRRVKPK 9 Unmodified _KGIRRVKPK_ 0 0 0 nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8 nc|ENSG00000126391|Q9BZ67-2|FRMD8 nc|ENSG00000126391|Q9BZ67-2|FRMD8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2750854492188 2 541.369467 1080.72438 0.31377 0.00016987 1.57 0.00084994 1.8838 0.0010198 542.3735712440352 148.63 0.18291 143.92 143.83 144.01 -4.7095 7 4 3 0 0 0 0.64208 1 29531 29531 0.029283 0.016017 1 1390900 22812 3427 15031 15036 22627 22627 0.18724805241686227 KGIVFRHHE 9 Unmodified _KGIVFRHHE_ 0 0 0 REV__nc|ENSG00000115677|Q00341-2|HDLBP REV__nc|ENSG00000115677|Q00341-2|HDLBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2107849121094 3 374.87708 1121.60941 -1.8452 -0.00069173 0.527 0.00019756 -1.3182 -0.00049417 374.8772179134574 18.461 0.27344 16.946 16.781 17.054 -1.5148 13 7 2 0 0 0 0.59831 1 2735 2735 0.20686 0.19858 1 813820 + 22813 15445 15032 15037 22628 22628 0.053470760399022765 KGIVRILF 8 Unmodified _KGIVRILF_ 0 0 0 REV__tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1 REV__tr|U7SSR1|U7SSR1_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01459PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.88006591796875 3 315.879651 944.617122 NaN NaN NaN NaN NaN NaN NaN 16.862 1 16.862 16.362 17.362 0 0 0 0 0.23899 1 2642 2642 1.3295 0 1 + 22814 25064 15033 15038 22629 22629 0.14259835307473168 KGIVVKGVKLY 11 Unmodified _KGIVVKGVKLY_ 0 0 0 REV__ENST00000464875.1_1_3:57651804-57678562:-|nuORF REV__ENST00000464875.1_1_3:57651804-57678562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2886962890625 2 602.394816 1202.77508 NaN NaN NaN NaN NaN NaN NaN 143.34 1 143.34 142.84 143.84 0 0 0 0 0.22632 1 28600 28600 0.03141 0 1 + 22815 21943 15034 15039 22630 22630 0.18180289776046266 KGKGRTYGSKY 11 Unmodified _KGKGRTYGSKY_ 0 0 0 ENSG00000149633|ENST00000279024|KIAA1755;KIAA1755|p.P752Lfs*11|1|0.15|ENSG00000149633|chr20:38223551-38223551|G/-|frameshift_variant;KIAA1755|p.S532Afs*3|1|0.18|ENSG00000149633|chr20:38239682-38239682|G/-|frameshift_variant ENSG00000149633|ENST00000279024|KIAA1755 ENSG00000149633|ENST00000279024|KIAA1755 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7593383789062 2 622.840936 1243.66732 0.32381 0.00020168 1.5838 0.00098643 1.9076 0.0011881 623.3437187574448 141.71 0.10359 136.72 136.67 136.77 -4.9877 4 2 2 0 0 0 0.95894 1 27288 27288 2.7352 0 1 1408100 22816 4804 15035 15040 22631 22631 0.055232931746331815 KGKHILILPP 10 Unmodified _KGKHILILPP_ 0 0 0 L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|17|1|sense L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|17|1|sense L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|17|1|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 558.42236328125 2 558.368601 1114.72265 NaN NaN NaN NaN NaN NaN NaN 34.678 1 32.425 31.925 32.925 -2.2527 0 0 0 0.22588 1 6089 6089 1.6526 0.17072 1 22817 12035 15036 15041 22632 22632 0.16987751433089215 KGKHRKLL 8 Unmodified _KGKHRKLL_ 0 0 0 REV__nc|ENSG00000162267|Q06033-2|ITIH3 REV__nc|ENSG00000162267|Q06033-2|ITIH3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25787353515625 2 490.329811 978.645068 0.1977 9.6939E-05 -3.7595 -0.0018434 -3.5618 -0.0017465 490.3301678930878 161.08 0.10757 161.08 160.99 161.1 0 4 2 2 0 0 0 0.83982 1 32340 32340 2.5775 0.27475 1 1383800 + + 22818 17485 15037 15042 22633 22633 0.15489158287550708 KGKHRKLL 8 Unmodified _KGKHRKLL_ 0 0 0 REV__nc|ENSG00000162267|Q06033-2|ITIH3 REV__nc|ENSG00000162267|Q06033-2|ITIH3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2760314941406 2 490.329811 978.645068 NaN NaN NaN NaN NaN NaN NaN 161.48 1 156.68 156.18 157.18 -4.7952 0 0 0 0.21486 1 32114 32114 2.5775 1.7838 1 + + 22819 17485 15037 15042 22634 22634 0.15489158287550708 KGKINTESKF 10 Unmodified _KGKINTESKF_ 0 0 0 REV__LRRIQ3|p.P276S|1|0.3|ENSG00000162620|chr1:74109435-74109435|G/A|missense_variant REV__LRRIQ3|p.P276S|1|0.3|ENSG00000162620|chr1:74109435-74109435|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3185424804688 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 123.84 1 123.84 123.34 124.34 0 0 0 0 2.8426 1 24414 24414 0.84494 0 1 + 22820 23821 15038 15043 22635 22635 0.06533086051786086 KGKKGMKG 8 Unmodified _KGKKGMKG_ 0 0 0 REV__ENST00000568502.1_1_16:87795753-87799565:-|nuORF REV__ENST00000568502.1_1_16:87795753-87799565:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 834.103271484375 1 833.502569 832.495293 0.64709 0.00053936 0.8535 0.0007114 1.5006 0.0012508 833.5052248382007 169.45 0.19965 164.66 164.52 164.72 -4.7898 6 5 2 0 0 0 1.0274 1 34300 34300 2.0598 0 1 15265000 + 22821 23143 15039 15044 22636 22636 0.07234469953448297 KGKKHGKLRK 10 Unmodified _KGKKHGKLRK_ 0 0 0 ENST00000603137.1_1_2:28238673-28239105:-|nuORF ENST00000603137.1_1_2:28238673-28239105:-|nuORF ENST00000603137.1_1_2:28238673-28239105:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2662353515625 2 590.393474 1178.77239 NaN NaN NaN NaN NaN NaN NaN 158.14 1 158.14 157.64 158.64 0 0 0 0 2.8426 1 31750 31750 0.063865 0 1 22822 11719 15040 15045 22637 22637 0.19015879161725024 KGKKIRKPRTI 11 Unmodified _KGKKIRKPRTI_ 0 0 0 nc|ENSG00000006377|P56179|DLX6;ENST00000493273.2_1_7:96636558-96639356:+|nuORF;ENSG00000144355|ENST00000361725|DLX1;nc|ENSG00000006377|P56179-2|DLX6;ENST00000409492.1_1_2:172950333-172951818:+|nuORF;DLX6|p.L238Sfs*55|2|0.14|ENSG00000006377|chr7:97009873-97009873|C/-|frameshift_variant;ENSG00000006377|ENST00000518156|DLX6 nc|ENSG00000006377|P56179|DLX6 nc|ENSG00000006377|P56179|DLX6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 442.3000183105469 3 442.301501 1323.88267 NaN NaN NaN NaN NaN NaN NaN 6.673 1 6.0467 5.5467 6.5467 -0.62626 0 0 0 0.23698 1 525 525 0.094841 0.021578 1 22823 849 15041 15046 22638 22638 0.23368679430109296 KGKKKDKGLSR 11 Unmodified _KGKKKDKGLSR_ 0 0 0 tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1 tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1 tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7808837890625 2 622.893503 1243.77245 0.35638 0.00022198 -1.8959 -0.0011809 -1.5395 -0.00095894 623.3939937141677 148.05 0.27936 142.9 142.69 142.97 -5.1557 9 7 2 0 0 0 0.96156 1 28666 28666 2.086 0.60411 1 4882200 22824 26296 15042 15047 22639 22639 0.16031834371074183 KGKKRRLL 8 Unmodified _KGKKRRLL_ 0 0 0 nc|ENSG00000244588|Q9H4I0-2|RAD21L1;ENSG00000244588|ENST00000683101|RAD21L1;nc|ENSG00000244588|Q9H4I0|RAD21L1 nc|ENSG00000244588|Q9H4I0-2|RAD21L1 nc|ENSG00000244588|Q9H4I0-2|RAD21L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 499.8528137207031 2 499.85091 997.687267 NaN NaN NaN NaN NaN NaN NaN 172.68 1 167.8 167.3 168.3 -4.881 0 0 0 0.21486 1 34291 34291 2.5775 0 1 22825 7883 15043 15048 22640 22640 0.18833133695943616 KGKKRRNRTT 10 Unmodified _KGKKRRNRTT_ 0 0 0 ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant;ENSG00000052850|ENST00000652299|ALX4 ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.752197265625 2 622.886544 1243.75853 NaN NaN NaN NaN NaN NaN NaN 172.1 1 167.22 166.72 167.72 -4.881 0 0 0 0.22588 1 34134 34134 5.2969 0.39987 1 22826 143 15044 15049 22641 22641 0.14640601662631525 KGKLFKRPL 9 Unmodified _KGKLFKRPL_ 0 0 0 tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1 tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1 tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7814331054688 2 543.860944 1085.70733 NaN NaN NaN NaN NaN NaN NaN 121.41 1 121.41 120.91 121.91 0 0 0 0 0.23508 1 23933 23933 2.0598 0 1 22827 26249 15045 15050 22642 22642 0.16790884635861403 KGKLHLLKAK 10 Unmodified _KGKLHLLKAK_ 0 0 0 ENST00000320248.3_1_8:1954634-1955009:+|nuORF ENST00000320248.3_1_8:1954634-1955009:+|nuORF ENST00000320248.3_1_8:1954634-1955009:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 568.3876953125 2 568.387326 1134.7601 NaN NaN NaN NaN NaN NaN NaN 165.12 1 160.33 159.83 160.83 -4.7898 0 0 0 2.8426 1 33047 33047 0.20733 0.17804 1 22828 8708 15046 15051 22643 22643 0.19810842698689157 KGKNNGKHY 9 Unmodified _KGKNNGKHY_ 0 0 0 CON__P01045-1;CON__Q2KJ62;CON__P01044-1 CON__P01045-1 CON__P01045-1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6783447265625 2 523.280515 1044.54648 -0.17965 -9.4006E-05 -0.3306 -0.000173 -0.51025 -0.000267 523.2783365685696 136.05 0.17978 131.41 131.29 131.47 -4.6399 6 4 2 0 0 0 0.84208 1 26833 26833 3.9444 0 1 1033000 + 22829 650 15047 15052 22644 22644 0.025985102518461645 KGKPKRVK 8 Unmodified _KGKPKRVK_ 0 0 0 REV__MBD4|p.E314Kfs*4|1|0.74|ENSG00000129071|chr3:129436705-129436705|T/-|frameshift_variant REV__MBD4|p.E314Kfs*4|1|0.74|ENSG00000129071|chr3:129436705-129436705|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.1294860839844 3 314.218666 939.634169 NaN NaN NaN NaN NaN NaN NaN 50.002 1 47.121 46.621 47.621 -2.8811 0 0 0 0.2386 1 9480 9480 0.063987 0.055711 1 + 22830 15946 15048 15053 22645 22645 0.16193755913263885 KGKPKRVK 8 Unmodified _KGKPKRVK_ 0 0 0 REV__MBD4|p.E314Kfs*4|1|0.74|ENSG00000129071|chr3:129436705-129436705|T/-|frameshift_variant REV__MBD4|p.E314Kfs*4|1|0.74|ENSG00000129071|chr3:129436705-129436705|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.16009521484375 3 314.218666 939.634169 NaN NaN NaN NaN NaN NaN NaN 50.056 1 47.049 46.549 47.549 -3.0068 0 0 0 0.2386 1 9191 9191 0.063987 0.055711 1 + 22831 15946 15048 15053 22646 22646 0.16193755913263885 KGKQGRFRGNL 11 Unmodified _KGKQGRFRGNL_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7511596679688 2 630.86782 1259.72109 NaN NaN NaN NaN NaN NaN NaN 91.794 1 87.699 87.199 88.199 -4.0946 0 0 0 0.23324 1 17482 17482 5.7319 0.43497 1 22832 4752 15049 15054 22647 22647 0.10161510397051643 KGKRKLFKKK 10 Unmodified _KGKRKLFKKK_ 0 0 0 REV__nc|ENSG00000181090|Q9H9B1-4|EHMT1 REV__nc|ENSG00000181090|Q9H9B1-4|EHMT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7615356445312 2 630.934974 1259.8554 NaN NaN NaN NaN NaN NaN NaN 85.153 1 85.153 84.653 85.653 0 0 0 0 0.22588 1 16617 16617 1.4819 1.0236 1 + 22833 18717 15050 15055 22648 22648 0.23586195889697592 KGKSALMCAA 10 Unmodified _KGKSALMCAA_ 0 0 0 REV__nc|ENSG00000101311|Q9BQL6-2|FERMT1 REV__nc|ENSG00000101311|Q9BQL6-2|FERMT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2565612792969 2 490.256805 978.499057 NaN NaN NaN NaN NaN NaN NaN 165.16 1 160.37 159.87 160.87 -4.7898 0 0 0 0.22588 1 33058 33058 12.241 2.8575 1 + 22834 14776 15051 15056 22649 22649 0.008947716649799986 KGKSFKQR 8 Unmodified _KGKSFKQR_ 0 0 0 ENST00000559443.1_1_15:58430764-58438974:+|nuORF;ENSG00000103569|ENST00000219919|AQP9 ENST00000559443.1_1_15:58430764-58438974:+|nuORF ENST00000559443.1_1_15:58430764-58438974:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 489.6595153808594 2 489.795801 977.577048 NaN NaN NaN NaN NaN NaN NaN 143.3 1 138.64 138.14 139.14 -4.656 0 0 0 0.23584 1 28343 28343 0.68139 0 1 22835 2200 15052 15057 22650 22650 0.08736288636896461 KGKTRLNAR 9 Unmodified _KGKTRLNAR_ 0 0 0 REV__ENSG00000148606|ENST00000372371|POLR3A REV__ENSG00000148606|ENST00000372371|POLR3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2594604492188 2 522.325257 1042.63596 0.20765 0.00010846 -1.012 -0.00052859 -0.80434 -0.00042013 522.8283564492724 161.33 0.14308 161.33 161.2 161.35 0 6 3 2 0 0 0 0.67531 1 32383 32383 7.9102 1.7044 1 1835600 + 22836 16984 15053 15058 22651 22651 0.116347649312047 KGKTRLNAR 9 Unmodified _KGKTRLNAR_ 0 0 0 REV__ENSG00000148606|ENST00000372371|POLR3A REV__ENSG00000148606|ENST00000372371|POLR3A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 522.325257 1042.63596 0.20765 0.00010846 -1.012 -0.00052859 -0.80434 -0.00042013 522.8283564492724 161.33 0.14308 161.33 161.2 161.35 0 0 0 NaN 7.9102 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1835600 + 22837 16984 15053 15058 0.116347649312047 KGKYGFKRFL 10 Unmodified _KGKYGFKRFL_ 0 0 0 PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant;PHKB|p.N422Ifs*52|1|0.46|ENSG00000102893|chr16:47596427-47596427|A/-|frameshift_variant;PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7664184570312 2 622.369133 1242.72371 NaN NaN NaN NaN NaN NaN NaN 76.783 1 73.368 72.868 73.868 -3.4151 0 0 0 0.22588 1 14984 14984 6.7232 0.51738 1 22838 2150 15054 15059 22652 22652 0.11205965801968887 KGLALSETVDF 11 Unmodified _KGLALSETVDF_ 0 0 0 THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|44|3|sense THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|44|3|sense THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|44|3|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2670288085938 2 590.316428 1178.6183 NaN NaN NaN NaN NaN NaN NaN 81.445 1 77.606 77.106 78.106 -3.8392 0 0 0 0.23087 1 15463 15463 7.609 0.31972 1 22839 25846 15055 15060 22653 22653 0.03613960095049151 KGLHHAVATL 10 Unmodified _KGLHHAVATL_ 0 0 0 REV__GNL3L|p.R369H|1|0.06|ENSG00000130119|chrX:54551899-54551899|G/A|missense_variant REV__GNL3L|p.R369H|1|0.06|ENSG00000130119|chrX:54551899-54551899|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6949462890625 2 523.808908 1045.60326 NaN NaN NaN NaN NaN NaN NaN 134.84 1 130.2 129.7 130.7 -4.6399 0 0 0 0.22588 1 26593 26593 9.3831 0.035688 1 + 22840 23583 15056 15061 22654 22654 0.08228557808365622 KGLKKWKSLL 10 Unmodified _KGLKKWKSLL_ 0 0 0 SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 600.7596435546875 2 600.894983 1199.77541 NaN NaN NaN NaN NaN NaN NaN 164.85 1 164.85 164.35 165.35 0 0 0 0 0.22588 1 33385 33385 6.2058 0.9089 1 22841 25781 15057 15062 22655 22655 0.18351709495891555 KGLKLVLLVV 10 Unmodified _KGLKLVLLVV_ 0 0 0 ENSG00000177558|ENST00000324675|FAM187B ENSG00000177558|ENST00000324675|FAM187B ENSG00000177558|ENST00000324675|FAM187B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.259033203125 2 541.389003 1080.76345 NaN NaN NaN NaN NaN NaN NaN 125.62 1 125.62 125.12 126.12 0 0 0 0 0.22588 1 24775 24775 0.40072 0.40072 1 22842 6520 15058 15063 22656 22656 0.22630092752683595 KGLLLIVLLL 10 Unmodified _KGLLLIVLLL_ 0 0 0 tr|U7SWQ9|U7SWQ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01141PE=4SV=1 tr|U7SWQ9|U7SWQ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01141PE=4SV=1 tr|U7SWQ9|U7SWQ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01141PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7919311523438 2 547.899203 1093.78385 NaN NaN NaN NaN NaN NaN NaN 45.178 1 45.178 44.678 45.678 0 0 0 0 0.22588 1 8487 8487 0.40072 0.40072 1 22843 26253 15059 15064 22657 22657 0.240712634124975 KGLLLIVLLL 10 Unmodified _KGLLLIVLLL_ 0 0 0 tr|U7SWQ9|U7SWQ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01141PE=4SV=1 tr|U7SWQ9|U7SWQ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01141PE=4SV=1 tr|U7SWQ9|U7SWQ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01141PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7700805664062 2 547.899203 1093.78385 NaN NaN NaN NaN NaN NaN NaN 44.861 1 42.113 41.613 42.613 -2.7475 0 0 0 0.22588 1 8126 8126 1.6526 1.6526 1 22844 26253 15059 15064 22658 22658 0.240712634124975 KGLLLIVLLLG 11 Unmodified _KGLLLIVLLLG_ 0 0 0 tr|U7SWQ9|U7SWQ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01141PE=4SV=1 tr|U7SWQ9|U7SWQ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01141PE=4SV=1 tr|U7SWQ9|U7SWQ9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01141PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3388061523438 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 147.17 1 142.17 141.67 142.67 -5 0 0 0 0.23698 1 28485 28485 1.3295 0 1 22845 26253 15060 15065 22659 22659 0.23594648441212485 KGLMSKKKY 9 Unmodified _KGLMSKKKY_ 0 0 0 REV__ENST00000509092.5_1_4:55124935-55146696:+|nuORF REV__ENST00000509092.5_1_4:55124935-55146696:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27587890625 2 541.823169 1081.63179 0.24846 0.00013462 -3.8082 -0.0020634 -3.5597 -0.0019287 541.8216815045249 129.15 0.10252 124.41 124.36 124.46 -4.7408 4 2 2 0 0 0 0.87511 1 24845 24845 3.9444 3.3429 1 790780 + 22846 22522 15061 15066 22660 22660 0.0942353939331042 KGLPAAGPQRR 11 Unmodified _KGLPAAGPQRR_ 0 0 0 REV__ENSG00000228672|ENST00000434752|PROB1 REV__ENSG00000228672|ENST00000434752|PROB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3232421875 2 575.843813 1149.67307 0.3987 0.00022959 -1.1065 -0.00063718 -0.70781 -0.00040759 575.8430280591883 154.83 2.5682 149.58 147.54 150.11 -5.2527 156 72 3 0 0 0 0.80859 1 29745 29745 2.4985 0 1 6641300 + 22847 19737 15062 15067 22661 22661 0.10422436476960684 KGLPKMQVI 9 Unmodified _KGLPKMQVI_ 0 0 0 ENST00000525460.5_1_1:108115955-108220600:-|nuORF ENST00000525460.5_1_1:108115955-108220600:-|nuORF ENST00000525460.5_1_1:108115955-108220600:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.477783203125 2 507.312438 1012.61032 -0.04195 -2.1282E-05 0.046116 2.3395E-05 0.0041666 2.1138E-06 507.3124772489799 139.7 0.93674 135.05 134.48 135.42 -4.6439 61 26 3 0 0 0 0.53499 1 27475 27475 0.37959 0.37959 1 13925000 22848 10895 15063 15068 22662 22662 0.10452154364577382 KGLVYDYMY 9 Unmodified _KGLVYDYMY_ 0 0 0 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;nc|ENSG00000174844|Q6ZR08|DNAH12 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3115844726562 2 576.275718 1150.53688 NaN NaN NaN NaN NaN NaN NaN 136.28 1 131.39 130.89 131.89 -4.8951 0 0 0 0.23508 1 26188 26188 7.2892 1.5574 1 22849 861;12472 15064 15069 22663 22663 -0.03236438868543701 KGMGFLMMK 9 Unmodified _KGMGFLMMK_ 0 0 0 REV__ENSG00000140505|ENST00000343932|CYP1A2 REV__ENSG00000140505|ENST00000343932|CYP1A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2659912109375 2 521.765951 1041.51735 -0.92134 -0.00048072 0.6935 0.00036185 -0.22784 -0.00011888 521.7661968854221 21.26 0.52959 19.875 19.578 20.108 -1.3847 22 14 2 0 0 0 0.48181 1 3369 3369 0.40827 0.28045 1 332980 + 22850 16579 15065 15070 22664 22664 -0.0017480968467680214 KGMNFIQPG 9 Unmodified _KGMNFIQPG_ 0 0 0 REV__tr|U7SJH8|U7SJH8_FUSNUATP-dependentzincmetalloproteaseFtsHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsHPE=3SV=1 REV__tr|U7SJH8|U7SJH8_FUSNUATP-dependentzincmetalloproteaseFtsHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsHPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 331.165771484375 3 331.172505 990.495686 NaN NaN NaN NaN NaN NaN NaN 107.67 1 103.35 102.85 103.85 -4.32 0 0 0 0.23508 1 21209 21209 1.1933 0.23107 1 + 22851 24914 15066 15071 22665 22665 5.844882628025516E-05 KGMRKRRR 8 Unmodified _KGMRKRRR_ 0 0 0 ZEB1|p.K1058Nfs*20|1|0.36|ENSG00000148516|chr10:31527059-31527059|A/-|frameshift_variant ZEB1|p.K1058Nfs*20|1|0.36|ENSG00000148516|chr10:31527059-31527059|A/-|frameshift_variant ZEB1|p.K1058Nfs*20|1|0.36|ENSG00000148516|chr10:31527059-31527059|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.17333984375 3 363.229571 1086.66688 -0.37287 -0.00013544 -2.2484 -0.00081667 -2.6212 -0.00095211 363.2288339933069 18.484 0.17527 17.159 17.046 17.222 -1.3251 6 4 2 0 0 0 8448 1 2783 2783 0.62683 0 1 255470 22852 26596 15067 15072 22666 22666 0.12701639764486572 KGMSQPSL 8 Unmodified _KGMSQPSL_ 0 0 0 REV__AARS2|p.P919S|1|0.38|ENSG00000124608|chr6:44301194-44301194|G/A|missense_variant REV__AARS2|p.P919S|1|0.38|ENSG00000124608|chr6:44301194-44301194|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 424.2188720703125 2 424.220746 846.426938 NaN NaN NaN NaN NaN NaN NaN 44.575 1 41.828 41.328 42.328 -2.7475 0 0 0 0.21486 1 8070 8070 12.532 0 1 + 22853 12879 15068 15073 22667 22667 -0.0024181941707865917 KGNGILLL 8 Unmodified _KGNGILLL_ 0 0 0 REV__RPS6KA6|p.R636L|1|0.24|ENSG00000072133|chrX:84096258-84096258|C/A|missense_variant REV__RPS6KA6|p.R636L|1|0.24|ENSG00000072133|chrX:84096258-84096258|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 414.2695617675781 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 45.025 1 42.16 41.66 42.66 -2.8653 0 0 0 0.21486 1 8167 8167 2.3027 0.24298 1 + 22854 24581 15069 15074 22668 22668 0.10743580628081872 KGNHFEILPP 10 Unmodified _KGNHFEILPP_ 0 0 0 ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3152465820312 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 14.427 1 14.427 13.927 14.927 0 0 0 0 0.22588 1 2148 2148 6.7232 0.51738 1 22855 6148 15070 15075 22669 22669 0.04421120742927087 KGNIKVVLNP 10 Unmodified _KGNIKVVLNP_ 0 0 0 REV__LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant REV__LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2691040039062 2 541.340041 1080.66553 0.31174 0.00016876 1.177 0.00063718 1.4888 0.00080594 541.3394790388255 152.57 0.11035 152.57 152.52 152.63 0 4 2 2 0 0 0 1.1309 1 30573 30573 0.20733 0.035327 1 1617100 + 22856 16135 15071 15076 22670 22670 0.1284228415670441 KGNIRKSLTY 10 Unmodified _KGNIRKSLTY_ 0 0 0 REV__ENST00000443567.5_1_3:15282348-15292515:+|nuORF REV__ENST00000443567.5_1_3:15282348-15292515:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.27490234375 2 590.345855 1178.67716 NaN NaN NaN NaN NaN NaN NaN 84.342 1 84.342 83.842 84.842 0 0 0 0 0.22588 1 16447 16447 6.7232 2.3939 1 + 22857 16070 15072 15077 22671 22671 0.09496481180030969 KGNIRKSLTY 10 Unmodified _KGNIRKSLTY_ 0 0 0 REV__ENST00000443567.5_1_3:15282348-15292515:+|nuORF REV__ENST00000443567.5_1_3:15282348-15292515:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2720336914062 2 590.345855 1178.67716 NaN NaN NaN NaN NaN NaN NaN 119.18 1 119.18 118.68 119.68 0 0 0 0 0.22576 1 23482 23482 14.838 4.0143 1 + 22858 16070 15072 15077 22672 22672 0.09496481180030969 KGNKFSLSY 9 Unmodified _KGNKFSLSY_ 0 0 0 REV__ENST00000468640.1_1_6:71276643-71277231:+|nuORF REV__ENST00000468640.1_1_6:71276643-71277231:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2606811523438 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 139.51 1 134.56 134.06 135.06 -4.952 0 0 0 0.23508 1 26835 26835 12.532 1.732 1 + 22859 22001 15073 15078 22673 22673 0.025174564432290936 KGNLAENKFVD 11 Unmodified _KGNLAENKFVD_ 0 0 0 nc|ENSG00000144445|A0AUZ9-3|KANSL1L;KANSL1L|p.Y833Ifs*2|1|0.2|ENSG00000144445|chr2:210025171-210025172|-/T|frameshift_variant;nc|ENSG00000144445|A0AUZ9-2|KANSL1L;KANSL1L|p.K937Rfs*42|2|0.25|ENSG00000144445|chr2:210023103-210023103|T/-|frameshift_variant;ENSG00000144445|ENST00000281772|KANSL1L nc|ENSG00000144445|A0AUZ9-3|KANSL1L nc|ENSG00000144445|A0AUZ9-3|KANSL1L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 617.7227172851562 2 617.824952 1233.63535 NaN NaN NaN NaN NaN NaN NaN 172.58 1 167.7 167.2 168.2 -4.881 0 0 0 0.23018 1 34265 34265 8.1555 1.0538 1 22860 4553 15074 15079 22674 22674 0.02787880700839196 KGNRKKMT 8 Unmodified _KGNRKKMT_ 0 0 0 ENST00000533030.1_1_11:47376780-47400013:-|nuORF;ENSG00000066336|ENST00000378538|SPI1;nc|ENSG00000066336|P17947-2|SPI1 ENST00000533030.1_1_11:47376780-47400013:-|nuORF ENST00000533030.1_1_11:47376780-47400013:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7803039550781 2 481.781836 961.549119 NaN NaN NaN NaN NaN NaN NaN 170.45 1 170.45 169.95 170.95 0 0 0 0 0.21486 1 35048 35048 12.532 3.9383 1 22861 1371 15075 15080 22675 22675 0.06680642385151714 KGNVDLVFLF 10 Unmodified _KGNVDLVFLF_ 0 0 0 ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant;ITGAL|p.D890Tfs*9|3|0.12|ENSG00000005844|chr16:30510924-30510924|G/-|frameshift_variant;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3272705078125 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 128.56 1 128.56 128.06 129.06 0 0 0 0 0.22588 1 25390 25390 8.7454 0 1 22862 997 15076 15081 22676 22676 0.06935175545504535 KGNWHHYWENN 11 Unmodified _KGNWHHYWENN_ 0 0 0 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3687744140625 2 742.826349 1483.63815 NaN NaN NaN NaN NaN NaN NaN 108.42 1 108.42 107.92 108.92 0 0 0 0 0.23698 1 21321 21321 1.3295 0.25807 1 22863 1046 15077 15082 22677 22677 -0.08432851121619933 KGPCQPPF 8 Unmodified _KGPCQPPF_ 0 0 0 REV__ENSG00000187372|ENST00000341948|PCDHB13 REV__ENSG00000187372|ENST00000341948|PCDHB13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2174987792969 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 146.23 1 141.12 140.62 141.62 -5.1108 0 0 0 0.21486 1 28278 28278 9.3474 0 1 + 22864 19086 15078 15083 22678 22678 -0.019854982088986617 KGPGPAKYLR 10 Unmodified _KGPGPAKYLR_ 0 0 0 ENSG00000182950|ENST00000332145|ODF3L1 ENSG00000182950|ENST00000332145|ODF3L1 ENSG00000182950|ENST00000332145|ODF3L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7819213867188 2 543.824558 1085.63456 NaN NaN NaN NaN NaN NaN NaN 151.28 1 146.11 145.61 146.61 -5.1759 0 0 0 0.22588 1 29328 29328 12.241 1.4167 1 22865 6821 15079 15084 22679 22679 0.09517130842459665 KGPGQDMFDS 10 Unmodified _KGPGQDMFDS_ 0 0 0 nc|ENSG00000188611|Q9NR71-2|ASAH2;ENSG00000188611|ENST00000682911|ASAH2 nc|ENSG00000188611|Q9NR71-2|ASAH2 nc|ENSG00000188611|Q9NR71-2|ASAH2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.284423828125 2 541.234581 1080.45461 NaN NaN NaN NaN NaN NaN NaN 154.24 1 149.48 148.98 149.98 -4.7684 0 0 0 0.22588 1 30658 30658 9.3831 0 1 22866 7180 15080 15085 22680 22680 -0.08239960947503278 KGPHVILKME 10 Unmodified _KGPHVILKME_ 0 0 0 ENSG00000212864|ENST00000391553|RNF208;RNF208|p.D81Gfs*20|1|0.34|ENSG00000212864|chr9:137220971-137220972|-/C|frameshift_variant;RNF208|p.D81Tfs*38|1|0.53|ENSG00000212864|chr9:137220972-137220972|C/-|frameshift_variant ENSG00000212864|ENST00000391553|RNF208 ENSG00000212864|ENST00000391553|RNF208 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.322021484375 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 156.1 1 151.32 150.82 151.82 -4.7791 0 0 0 0.22588 1 31037 31037 5.7319 0.43497 1 22867 7680 15081 15086 22681 22681 0.08394924421986616 KGPIKKDKGL 10 Unmodified _KGPIKKDKGL_ 0 0 0 REV__CNST|p.S130Qfs*7|1|0.25|ENSG00000162852|chr1:246621432-246621432|T/-|frameshift_variant REV__CNST|p.S130Qfs*7|1|0.25|ENSG00000162852|chr1:246621432-246621432|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 542.5728149414062 2 542.347866 1082.68118 NaN NaN NaN NaN NaN NaN NaN 162.9 1 162.9 162.4 163.4 0 0 0 0 0.22588 1 32791 32791 5.7319 0.97584 1 + 22868 13464 15082 15087 22682 22682 0.14314570673764138 KGPILLLIL 9 Unmodified _KGPILLLIL_ 0 0 0 REV__ENST00000275072.4_1_6:89862778-89862823:+|nuORF REV__ENST00000275072.4_1_6:89862778-89862823:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26806640625 2 490.349346 978.684139 NaN NaN NaN NaN NaN NaN NaN 128.41 1 123.67 123.17 124.17 -4.7408 0 0 0 0.23508 1 24709 24709 2.0598 0 1 + 22869 20290 15083 15088 22683 22683 0.19394445798582183 KGPKKKLY 8 Unmodified _KGPKKKLY_ 0 0 0 ENST00000490770.5_1_1:155110767-155110920:+|nuORF ENST00000490770.5_1_1:155110767-155110920:+|nuORF ENST00000490770.5_1_1:155110767-155110920:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2423095703125 2 481.313295 960.612037 NaN NaN NaN NaN NaN NaN NaN 177.07 1 172.17 171.67 172.67 -4.9008 0 0 0 0.21486 1 35311 35311 0.69038 0 1 22870 10516 15084 15089 22684 22684 0.1301553144483023 KGPLCSNASPL 11 Unmodified _KGPLCSNASPL_ 0 0 0 REV__ENST00000486029.1_1_X:18694175-18709044:+|nuORF REV__ENST00000486029.1_1_X:18694175-18709044:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7840576171875 2 543.784241 1085.55393 0.81454 0.00044293 -1.2265 -0.00066695 -0.41195 -0.00022401 543.7837233856028 106.2 1.5902 102.11 101.16 102.75 -4.0913 145 45 5 0 0 0 0.31319 1 20363 20363 3.3108 0 1 30328000 + 22871 22229 15085 15090 22685 22685 0.0145748173724769 KGPLFEDSPP 10 Unmodified _KGPLFEDSPP_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;ENST00000512124.6_1_5:31467712-31485015:-|nuORF nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7755737304688 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 16.896 1 16.896 16.396 17.396 0 0 0 0 0.22588 1 2648 2648 9.3831 0 1 22872 2738 15086 15091 22686 22686 -2.2671392343909247E-05 KGPLRAAIPY 10 Unmodified _KGPLRAAIPY_ 0 0 0 ENSG00000203685|ENST00000366788|STUM ENSG00000203685|ENST00000366788|STUM ENSG00000203685|ENST00000366788|STUM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7811279296875 2 543.326934 1084.63931 0.33616 0.00018265 1.9234 0.001045 2.2596 0.0012277 543.8311930614473 136.44 0.20451 136.44 136.31 136.51 0 7 5 2 0 0 0 1.1258 1 27026 27026 0.20733 0 1 1812000 22873 7538 15087 15092 22687 22687 0.10038014985207155 KGPLSVFLAN 10 Unmodified _KGPLSVFLAN_ 0 0 0 nc|ENSG00000258628|A8MT19|RHPN2P1 nc|ENSG00000258628|A8MT19|RHPN2P1 nc|ENSG00000258628|A8MT19|RHPN2P1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6962280273438 2 523.305667 1044.59678 0.3155 0.0001651 -2.6143 -0.0013681 -2.2988 -0.001203 523.303483810892 140.39 0.42363 135.52 135.24 135.67 -4.8678 18 11 2 0 0 0 1.1244 1 27088 27088 0.51642 0 1 1798000 22874 12635 15088 15093 22688 22688 0.0762661985700106 KGPMQGWFFY 10 Unmodified _KGPMQGWFFY_ 0 0 0 ENST00000367607.7_2_1:180080953-180081142:+|nuORF ENST00000367607.7_2_1:180080953-180081142:+|nuORF ENST00000367607.7_2_1:180080953-180081142:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7490844726562 2 630.797152 1259.57975 0.41098 0.00025924 -0.41926 -0.00026447 -0.0082827 -5.2247E-06 630.7952383421672 161.1 0.18005 161.1 160.96 161.14 0 6 4 2 0 0 0 0.91149 1 32337 32337 3.5965 1.5367 1 4905000 22875 9078 15089 15094 22689 22689 -0.039656240204521964 KGPNLRRSQP 10 Unmodified _KGPNLRRSQP_ 0 0 0 ENST00000562206.1_1_16:67426983-67427259:-|nuORF ENST00000562206.1_1_16:67426983-67427259:-|nuORF ENST00000562206.1_1_16:67426983-67427259:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33740234375 2 576.833446 1151.65234 0.31877 0.00018388 -2.2718 -0.0013104 -1.953 -0.0011266 576.8314751898142 145.44 0.13721 140.5 140.42 140.55 -4.9445 5 3 2 0 0 0 0.86856 1 28131 28131 7.609 0.31972 1 1475700 22876 11311 15090 15095 22690 22690 0.08257846097308175 KGPNQELLEKS 11 Unmodified _KGPNQELLEKS_ 0 0 0 REV__ENSG00000169221|ENST00000409939|TBC1D10B REV__ENSG00000169221|ENST00000409939|TBC1D10B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7534790039062 2 621.838059 1241.66157 0.37861 0.00023544 0.43472 0.00027033 0.81333 0.00050576 622.3389586931938 76.342 0.17188 72.708 72.611 72.783 -3.6337 9 4 3 0 0 0 0.79336 1 14515 14515 4.5289 0.19963 1 949840 + 22877 18088 15091 15096 22691 22691 0.050401498723203986 KGPPGPLRYP 10 Unmodified _KGPPGPLRYP_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2744140625 2 541.311284 1080.60801 0.21641 0.00011714 1.1061 0.00059876 1.3225 0.0007159 541.3132236661661 156.34 0.24084 151.05 150.9 151.14 -5.2854 12 6 3 0 0 0 0.85223 1 30340 30340 18.146 12.916 1 858020 + 22878 17221 15092 15097 22692 22692 0.07093441951110435 KGPPGVRGDP 10 Unmodified _KGPPGVRGDP_ 0 0 0 ENST00000471862.1_1_2:228162448-228168961:+|nuORF;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3 ENST00000471862.1_1_2:228162448-228168961:+|nuORF ENST00000471862.1_1_2:228162448-228168961:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26904296875 2 490.269616 978.524678 NaN NaN NaN NaN NaN NaN NaN 143.17 1 138.15 137.65 138.65 -5.0261 0 0 0 0.22588 1 27600 27600 9.3831 0.035688 1 22879 5959 15093 15098 22693 22693 0.03455705503279205 KGPPPAVAPRP 11 Unmodified _KGPPPAVAPRP_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7838134765625 2 543.824558 1085.63456 0.33572 0.00018257 1.1531 0.00062708 1.4888 0.00080965 543.824122781597 136.99 0.16919 136.99 136.86 137.03 0 5 4 2 0 0 0 0.60996 1 27156 27156 0.11104 0 1 2788700 22880 7985 15094 15099 22694 22694 0.09517130842459665 KGPPSRASR 9 Unmodified _KGPPSRASR_ 0 0 0 REV__ENSG00000230657|ENST00000279575|PRB4 REV__ENSG00000230657|ENST00000279575|PRB4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7382507324219 2 478.275232 954.535912 NaN NaN NaN NaN NaN NaN NaN 144.75 1 139.8 139.3 140.3 -4.9445 0 0 0 0.23277 1 27966 27966 13.906 1.3745 1 + 22881 15652 15095 15100 22695 22695 0.056825275974119904 KGPPTNFNS 9 Unmodified _KGPPTNFNS_ 0 0 0 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.242431640625 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 175.61 1 170.73 170.23 171.23 -4.8739 0 0 0 0.19646 1 34923 34923 0.073264 0 1 22882 6744 15096 15101 22696 22696 -0.015319761420073519 KGPPTNFNS 9 Unmodified _KGPPTNFNS_ 0 0 0 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24310302734375 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 175.59 1 170.69 170.19 171.19 -4.9008 0 0 0 0.23508 1 34998 34998 1.8442 0 1 22883 6744 15096 15101 22697 22697 -0.015319761420073519 KGPQDPSACHY 11 Unmodified _KGPQDPSACHY_ 0 0 0 PUS1|p.R261H|1|0.35|ENSG00000177192|chr12:131941529-131941529|G/A|missense_variant PUS1|p.R261H|1|0.35|ENSG00000177192|chr12:131941529-131941529|G/A|missense_variant PUS1|p.R261H|1|0.35|ENSG00000177192|chr12:131941529-131941529|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2725219726562 2 601.76658 1201.51861 0.3921 0.00023595 -3.8622 -0.0023241 -3.4701 -0.0020882 602.264000555466 141.19 0.16837 141.19 141.06 141.23 0 5 4 2 0 0 0 0.74417 1 28112 28112 8.7454 2.0222 1 2215200 22884 12850 15097 15102 22698 22698 -0.07409180790546088 KGPRTEITSSK 11 Unmodified _KGPRTEITSSK_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant;MUC16|p.S4774Ffs*12|1|0.01|ENSG00000181143|chr19:8962451-8962452|-/AC|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2783813476562 2 602.338227 1202.6619 NaN NaN NaN NaN NaN NaN NaN 149.21 1 144.01 143.51 144.51 -5.1994 0 0 0 0.22765 1 28901 28901 10.151 0.76745 1 22885 6711 15098 15103 22699 22699 0.06867569592168365 KGPTFTVRVF 10 Unmodified _KGPTFTVRVF_ 0 0 0 REV__ENSG00000141385|ENST00000269143|AFG3L2 REV__ENSG00000141385|ENST00000269143|AFG3L2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3264770507812 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 147.97 1 142.91 142.41 143.41 -5.0595 0 0 0 0.22588 1 28655 28655 13.042 0.80181 1 + 22886 16623 15099 15104 22700 22700 0.08057997639662062 KGPVTSHGF 9 Unmodified _KGPVTSHGF_ 0 0 0 FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;ENST00000494000.1_1_3:172048292-172052928:+|nuORF FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;ENST00000494000.1_1_3:172048292-172052928:+|nuORF FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2464294433594 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 144.4 1 139.45 138.95 139.95 -4.9445 0 0 0 0.23508 1 27889 27889 11.64 3.047 1 22887 1517;10553 15100 15105 22701 22701 0.009566315832330474 KGPVTSHGF 9 Unmodified _KGPVTSHGF_ 0 0 0 FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;ENST00000494000.1_1_3:172048292-172052928:+|nuORF FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;ENST00000494000.1_1_3:172048292-172052928:+|nuORF FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2462158203125 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 148.36 1 143.3 142.8 143.8 -5.0595 0 0 0 0.22251 1 28732 28732 16.942 7.5949 1 22888 1517;10553 15100 15105 22702 22702 0.009566315832330474 KGPYSHNQ 8 Unmodified _KGPYSHNQ_ 0 0 0 REV__ENST00000493551.1_1_2:29383269-29390459:+|nuORF REV__ENST00000493551.1_1_2:29383269-29390459:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 466.13958740234375 2 465.725041 929.435529 NaN NaN NaN NaN NaN NaN NaN 14.555 1 13.441 12.941 13.941 -1.1142 0 0 0 0.21486 1 2189 2189 2.5775 0 1 + 22889 22351 15101 15106 22703 22703 -0.0320112945623805 KGQQTRKKL 9 Unmodified _KGQQTRKKL_ 0 0 0 REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7757568359375 2 543.840739 1085.66693 NaN NaN NaN NaN NaN NaN NaN 172.71 1 167.83 167.33 168.33 -4.881 0 0 0 0.23508 1 34298 34298 7.2892 2.5332 1 + 22890 17267 15102 15107 22704 22704 0.12751918245453453 KGQVISHPN 9 Unmodified _KGQVISHPN_ 0 0 0 ENST00000313349.3_1_2:64861977-64862394:-|nuORF ENST00000313349.3_1_2:64861977-64862394:-|nuORF ENST00000313349.3_1_2:64861977-64862394:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2678527832031 2 490.269616 978.524678 NaN NaN NaN NaN NaN NaN NaN 42.008 1 42.008 41.508 42.508 0 0 0 0 0.20294 1 7846 7846 22.736 3.2973 1 22891 8664 15103 15108 22705 22705 0.03455705503267836 KGRKKLRLF 9 Unmodified _KGRKKLRLF_ 0 0 0 SPIC|p.N146Kfs*50|1|0.31|ENSG00000166211|chr12:101486455-101486456|-/A|frameshift_variant;ENSG00000166211|ENST00000551346|SPIC SPIC|p.N146Kfs*50|1|0.31|ENSG00000166211|chr12:101486455-101486456|-/A|frameshift_variant SPIC|p.N146Kfs*50|1|0.31|ENSG00000166211|chr12:101486455-101486456|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 573.4464111328125 2 573.385117 1144.75568 0.28883 0.00016561 -0.71898 -0.00041225 -0.43015 -0.00024664 573.8850782328998 146.7 0.20277 146.7 146.54 146.74 0 6 5 2 0 0 0 0.6171 1 29318 29318 0.40827 0 1 2560700 22892 5703 15104 15109 22706 22706 0.18909378275770905 KGRKLKKRYKT 11 Unmodified _KGRKLKKRYKT_ 0 0 0 REV__ENST00000502722.1_1_5:77784733-77784811:-|nuORF REV__ENST00000502722.1_1_5:77784733-77784811:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 703.2329711914062 2 703.459345 1404.90414 NaN NaN NaN NaN NaN NaN NaN 171.6 1 166.69 166.19 167.19 -4.9149 0 0 0 0.22632 1 33999 33999 0.094841 0 1 + 22893 22445 15105 15110 22707 22707 0.21788064458814915 KGRKSRKKK 9 Unmodified _KGRKSRKKK_ 0 0 0 ENST00000567393.5_1_15:75645991-75647372:+|nuORF;ENSG00000140398|ENST00000355059|NEIL1 ENST00000567393.5_1_15:75645991-75647372:+|nuORF ENST00000567393.5_1_15:75645991-75647372:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 558.3248901367188 2 558.377823 1114.74109 NaN NaN NaN NaN NaN NaN NaN 171.67 1 166.76 166.26 167.26 -4.9149 0 0 0 0.23508 1 34015 34015 1.8442 0 1 22894 4297 15106 15111 22708 22708 0.18831306127640346 KGRKVLRLLI 10 Unmodified _KGRKVLRLLI_ 0 0 0 ENSG00000135144|ENST00000548759|DTX1 ENSG00000135144|ENST00000548759|DTX1 ENSG00000135144|ENST00000548759|DTX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 598.6409301757812 2 598.4217 1194.82885 NaN NaN NaN NaN NaN NaN NaN 166.01 1 161.22 160.72 161.72 -4.7898 0 0 0 0.22588 1 33297 33297 1.6526 0 1 22895 3904 15107 15112 22709 22709 0.2392250699840588 KGRLHFSH 8 Unmodified _KGRLHFSH_ 0 0 0 nc|ENSG00000181634|O95150-2|TNFSF15 nc|ENSG00000181634|O95150-2|TNFSF15 nc|ENSG00000181634|O95150-2|TNFSF15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 328.0148010253906 3 327.850754 980.530432 -0.40317 -0.00013218 -1.1199 -0.00036717 -1.5231 -0.00049935 327.85034894497744 34.274 0.56198 31.957 31.664 32.226 -2.3175 33 15 3 0 0 0 1.0267 1 6331 6331 1.4819 0.28856 1 2917800 22896 12498 15108 15113 22710 22710 0.039388488056033566 KGRLHFSH 8 Unmodified _KGRLHFSH_ 0 0 0 nc|ENSG00000181634|O95150-2|TNFSF15 nc|ENSG00000181634|O95150-2|TNFSF15 nc|ENSG00000181634|O95150-2|TNFSF15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 327.850754 980.530432 -0.43352 -0.00014213 -0.9467 -0.00031038 -1.3802 -0.00045251 327.85039454220873 32.006 0.45155 32.006 31.809 32.261 0 0.0077262 0.00026989 NaN 1.4819 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3418000 22897 12498 15108 15113 0.039388488056033566 KGRLHFSH 8 Unmodified _KGRLHFSH_ 0 0 0 nc|ENSG00000181634|O95150-2|TNFSF15 nc|ENSG00000181634|O95150-2|TNFSF15 nc|ENSG00000181634|O95150-2|TNFSF15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 327.850754 980.530432 0.20303 6.6564E-05 -1.7181 -0.00056329 -1.5151 -0.00049673 327.85014646061427 34.152 0.44668 32.005 31.776 32.222 -2.1468 0.0063402 -0.00048886 NaN 1.4819 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3560800 22898 12498 15108 15113 0.039388488056033566 KGRLHFSH 8 Unmodified _KGRLHFSH_ 0 0 0 nc|ENSG00000181634|O95150-2|TNFSF15 nc|ENSG00000181634|O95150-2|TNFSF15 nc|ENSG00000181634|O95150-2|TNFSF15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 327.850754 980.530432 -0.31385 -0.0001029 -1.161 -0.00038065 -1.4749 -0.00048355 327.85029208064805 34.242 0.45215 32.026 31.74 32.193 -2.2158 0.027902 5.907E-05 NaN 1.4819 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2774000 22899 12498 15108 15113 0.039388488056033566 KGRLLPLVLL 10 Unmodified _KGRLLPLVLL_ 0 0 0 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 561.3899536132812 2 561.392077 1120.7696 NaN NaN NaN NaN NaN NaN NaN 173.65 1 168.86 168.36 169.36 -4.7898 0 0 0 0.22588 1 35436 35436 1.6526 0.17072 1 22900 6920 15109 15114 22711 22711 0.21404610984222927 KGRNRHIVV 9 Unmodified _KGRNRHIVV_ 0 0 0 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2166442871094 3 360.224591 1077.65194 NaN NaN NaN NaN NaN NaN NaN 37.049 1 34.58 34.08 35.08 -2.4688 0 0 0 0.23508 1 6842 6842 2.4985 0.41248 1 22901 2244 15110 15115 22712 22712 0.1162247116810704 KGRRKKGRT 9 Unmodified _KGRRKKGRT_ 0 0 0 ENSG00000143970|ENST00000435504|ASXL2;ASXL2|p.S466Ffs*8|1|0.28|ENSG00000143970|chr2:25750159-25750160|-/A|frameshift_variant;ASXL2|p.A664Dfs*43|1|0.07|ENSG00000143970|chr2:25744346-25744347|-/T|frameshift_variant;ASXL2|p.P778Qfs*21|1|0.48|ENSG00000143970|chr2:25744004-25744004|G/-|frameshift_variant ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7808227539062 2 543.851973 1085.68939 NaN NaN NaN NaN NaN NaN NaN 123.3 1 118.72 118.22 119.22 -4.5757 0 0 0 0.19649 1 24306 24306 0.12781 0 1 22902 4534 15111 15116 22713 22713 0.1499756243374577 KGRRNHCFGW 10 Unmodified _KGRRNHCFGW_ 0 0 0 REV__ENST00000360620.7_1_7:100400564-100401029:-|nuORF REV__ENST00000360620.7_1_7:100400564-100401029:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.3285827636719 3 420.877086 1259.60943 -0.92952 -0.00039121 1.5908 0.00066954 0.66129 0.00027832 420.8775411565876 22.133 0.27784 20.412 20.255 20.533 -1.7211 12 7 2 0 0 0 0.91149 1 3497 3497 0 0 1 342490 + 22903 20867 15112 15117 22714 22714 -0.00999247231766276 KGRRNHCFGW 10 Unmodified _KGRRNHCFGW_ 0 0 0 REV__ENST00000360620.7_1_7:100400564-100401029:-|nuORF REV__ENST00000360620.7_1_7:100400564-100401029:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 420.877086 1259.60943 0.39012 0.00016419 0.64399 0.00027104 1.0341 0.00043524 420.87727058280166 21.933 0.29007 20.459 20.266 20.557 -1.4742 0.023748 -0.00046074 NaN 0 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 475630 + 22904 20867 15112 15117 -0.00999247231766276 KGRVNSYG 8 Unmodified _KGRVNSYG_ 0 0 0 REV__FAM71B|p.L538*|2|0.27|ENSG00000170613|chr5:157162652-157162652|A/-|frameshift_variant REV__FAM71B|p.L538*|2|0.27|ENSG00000170613|chr5:157162652-157162652|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 440.8035583496094 2 440.735409 879.456264 NaN NaN NaN NaN NaN NaN NaN 8.2966 1 7.6175 7.1175 8.1175 -0.67913 0 0 0 0.2396 1 847 847 0.0082765 0 1 + 22905 18170 15113 15118 22715 22715 0.011714609234218187 KGRYKFKRRRE 11 Unmodified _KGRYKFKRRRE_ 0 0 0 REV__KPNA7|p.I322*|1|0.03|ENSG00000185467|chr7:99185098-99185099|AT/-|frameshift_variant REV__KPNA7|p.I322*|1|0.03|ENSG00000185467|chr7:99185098-99185099|AT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.6190185546875 3 508.639176 1522.8957 NaN NaN NaN NaN NaN NaN NaN 164.05 1 164.05 163.55 164.55 0 0 0 0 0.23698 1 33128 33128 0.40827 0.041592 1 + 22906 18970 15114 15119 22716 22716 0.15516510542192918 KGSDDVLLD 9 Unmodified _KGSDDVLLD_ 0 0 0 REV__ENSG00000027697|ENST00000367739|IFNGR1 REV__ENSG00000027697|ENST00000367739|IFNGR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2459411621094 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 23.891 1 22.102 21.602 22.602 -1.7886 0 0 0 0.19657 1 3864 3864 4.897 1.6157 1 + 22907 14007 15115 15120 22717 22717 -0.0054283292729451205 KGSDLTTEESH 11 Unmodified _KGSDLTTEESH_ 0 0 0 REV__DYDC1|p.A135T|1|0.27|ENSG00000170788|chr10:80338568-80338568|C/T|missense_variant REV__DYDC1|p.A135T|1|0.27|ENSG00000170788|chr10:80338568-80338568|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2928466796875 2 602.278032 1202.54151 NaN NaN NaN NaN NaN NaN NaN 172.36 1 167.46 166.96 167.96 -4.8977 0 0 0 0.22632 1 34183 34183 0.11104 0.037778 1 + 22908 13761 15116 15121 22718 22718 -0.05165883192103138 KGSGHVQLKQ 10 Unmodified _KGSGHVQLKQ_ 0 0 0 ENST00000472108.1_1_9:132641664-132642549:+|nuORF;ENSG00000136878|ENST00000372429|USP20 ENST00000472108.1_1_9:132641664-132642549:+|nuORF ENST00000472108.1_1_9:132641664-132642549:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2820434570312 2 541.309272 1080.60399 NaN NaN NaN NaN NaN NaN NaN 171.45 1 171.45 170.95 171.95 0 0 0 0 0.22583 1 35318 35318 13.906 2.2658 1 22909 4049 15117 15122 22719 22719 0.06691352457391986 KGSGQPAL 8 Unmodified _KGSGQPAL_ 0 0 0 REV__ENST00000532915.1_1_11:62538888-62545815:+|nuORF REV__ENST00000532915.1_1_11:62538888-62545815:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 379.4862060546875 2 379.213778 756.413003 NaN NaN NaN NaN NaN NaN NaN 90.531 1 86.753 86.253 87.253 -3.7779 0 0 0 0.2396 1 17326 17326 0.12286 0.12286 1 + 22910 22791 15118 15123 22720 22720 0.025052711461171384 KGSGSYGFL 9 Unmodified _KGSGSYGFL_ 0 0 0 REV__DAPK1|p.H695Y|1|0.32|ENSG00000196730|chr9:87681485-87681485|C/T|missense_variant REV__DAPK1|p.H695Y|1|0.32|ENSG00000196730|chr9:87681485-87681485|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2303161621094 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 165.59 1 160.8 160.3 161.3 -4.7898 0 0 0 0.19704 1 33177 33177 0.87518 0.81131 1 + 22911 13638 15119 15124 22721 22721 -0.01086477027968158 KGSGVVIIM 9 Unmodified _KGSGVVIIM_ 0 0 0 nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4 nc|ENSG00000133835|P51659-2|HSD17B4 nc|ENSG00000133835|P51659-2|HSD17B4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 452.1904602050781 2 452.270238 902.525924 -0.39081 -0.00017675 0.5378 0.00024323 0.14699 6.648E-05 452.27042707398346 111.47 0.90793 107.05 106.61 107.52 -4.4231 65 25 3 0 0 0 0.15889 1 21909 21909 54.068 39.23 1 12310000 22912 12333 15120 15125 22722 22722 0.07076203547831028 KGSGVVIIM 9 Unmodified _KGSGVVIIM_ 0 0 0 nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4 nc|ENSG00000133835|P51659-2|HSD17B4 nc|ENSG00000133835|P51659-2|HSD17B4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 452.270238 902.525924 -0.13011 -5.8843E-05 0.19377 8.7636E-05 0.063663 2.8793E-05 452.2702939511117 111.61 0.83978 107.11 106.68 107.52 -4.4915 0.033574 -0.00014895 NaN 54.068 61 23 3 NaN NaN NaN NaN 0 NaN NaN 0 10652000 22913 12333 15120 15125 0.07076203547831028 KGSLRRPQ 8 Unmodified _KGSLRRPQ_ 0 0 0 REV__nc|ENSG00000107882|Q9UMX1-2|SUFU REV__nc|ENSG00000107882|Q9UMX1-2|SUFU MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 471.28692626953125 2 471.2856 940.556647 NaN NaN NaN NaN NaN NaN NaN 162.41 1 162.41 161.91 162.91 0 0 0 0 0.22847 1 32652 32652 10.074 3.8681 1 + 22914 15097 15121 15126 22723 22723 0.0839911797708055 KGSMIAAP 8 Unmodified _KGSMIAAP_ 0 0 0 MAN2C1|p.V752Cfs*60|1|0.43|ENSG00000140400|chr15:75358611-75358611|C/-|frameshift_variant;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;MAN2C1|p.G331Afs*17|2|0.14|ENSG00000140400|chr15:75362359-75362359|C/-|frameshift_variant MAN2C1|p.V752Cfs*60|1|0.43|ENSG00000140400|chr15:75358611-75358611|C/-|frameshift_variant MAN2C1|p.V752Cfs*60|1|0.43|ENSG00000140400|chr15:75358611-75358611|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.71197509765625 2 387.712556 773.41056 NaN NaN NaN NaN NaN NaN NaN 116.96 1 116.96 116.46 117.46 0 0 0 0 0.2396 1 23035 23035 0.12286 0 1 22915 12107 15122 15127 22724 22724 0.014790994168151883 KGSRDKPCVP 10 Unmodified _KGSRDKPCVP_ 0 0 0 ENST00000485652.1_1_7:105279006-105305718:-|nuORF;ENST00000472910.5_1_7:105260689-105318420:-|nuORF;ATXN7L1|p.V398Tfs*13|1|0.04|ENSG00000146776|chr7:105638364-105638365|-/GAGTT|frameshift_variant;ATXN7L1|p.K676Rfs*5|1|0.49|ENSG00000146776|chr7:105614307-105614307|T/-|frameshift_variant;nc|ENSG00000146776|Q9ULK2-3|ATXN7L1;ENSG00000146776|ENST00000419735|ATXN7L1 ENST00000485652.1_1_7:105279006-105305718:-|nuORF ENST00000485652.1_1_7:105279006-105305718:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7880859375 2 543.789858 1085.56516 NaN NaN NaN NaN NaN NaN NaN 169.17 1 164.3 163.8 164.8 -4.873 0 0 0 2.8426 1 33400 33400 0.20733 0.16354 1 22916 280 15123 15128 22725 22725 0.0258030383138248 KGSRGVVP 8 Unmodified _KGSRGVVP_ 0 0 0 FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant;ENSG00000073910|ENST00000542859|FRY;FRY|p.L1623Wfs*22|1|0.44|ENSG00000073910|chr13:32224331-32224331|C/-|frameshift_variant;FRY|p.T871Hfs*25|1|0.22|ENSG00000073910|chr13:32178361-32178362|-/C|frameshift_variant FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.2408447265625 2 400.24287 798.471186 NaN NaN NaN NaN NaN NaN NaN 113.68 1 109.22 108.72 109.72 -4.4539 0 0 0 0.23182 1 22397 22397 1.4551 0 1 22917 1489 15124 15129 22726 22726 0.06388952791417069 KGSRKLHLKL 10 Unmodified _KGSRKLHLKL_ 0 0 0 ENST00000330374.6_1_X:150574182-150574368:+|nuORF ENST00000330374.6_1_X:150574182-150574368:+|nuORF ENST00000330374.6_1_X:150574182-150574368:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2618408203125 2 590.387857 1178.76116 NaN NaN NaN NaN NaN NaN NaN 143.51 1 143.51 143.01 144.01 0 0 0 0 2.8426 1 28638 28638 0.063865 0.062484 1 22918 8766 15125 15130 22727 22727 0.17893057067612972 KGSSRAGG 8 Unmodified _KGSSRAGG_ 0 0 0 REV__ENST00000389811.8_1_2:111490161-111525952:+|nuORF REV__ENST00000389811.8_1_2:111490161-111525952:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.21258544921875 2 360.193377 718.372201 NaN NaN NaN NaN NaN NaN NaN 65.956 1 62.497 61.997 62.997 -3.4581 0 0 0 0.23664 1 12352 12352 3.2813 0 1 + 22919 21196 15126 15131 22728 22728 0.0017492982652811406 KGSSRAGG 8 Unmodified _KGSSRAGG_ 0 0 0 REV__ENST00000389811.8_1_2:111490161-111525952:+|nuORF REV__ENST00000389811.8_1_2:111490161-111525952:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2079162597656 2 360.193377 718.372201 NaN NaN NaN NaN NaN NaN NaN 73.642 1 70.048 69.548 70.548 -3.594 0 0 0 0.23782 1 13978 13978 0.12286 0.058877 1 + 22920 21196 15126 15131 22729 22729 0.0017492982652811406 KGSTDRNSP 9 Unmodified _KGSTDRNSP_ 0 0 0 IFFO2|p.A481T|1|0.38|ENSG00000169991|chr1:18910349-18910349|C/T|missense_variant IFFO2|p.A481T|1|0.38|ENSG00000169991|chr1:18910349-18910349|C/T|missense_variant IFFO2|p.A481T|1|0.38|ENSG00000169991|chr1:18910349-18910349|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2406311035156 2 481.238513 960.462472 NaN NaN NaN NaN NaN NaN NaN 57.205 1 54.016 53.516 54.516 -3.1895 0 0 0 0.18489 1 10618 10618 0.37959 0 1 22921 11933 15127 15132 22730 22730 -0.019340656357144326 KGSVKSCG 8 Unmodified _KGSVKSCG_ 0 0 0 REV__nc|ENSG00000134369|Q8NEY1-5|NAV1 REV__nc|ENSG00000134369|Q8NEY1-5|NAV1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 383.5240173339844 2 383.199813 764.385073 NaN NaN NaN NaN NaN NaN NaN 73.115 1 69.488 68.988 69.988 -3.6275 0 0 0 0.23025 1 13816 13816 0.063987 0 1 + 22922 16207 15128 15133 22731 22731 -0.006543751055914981 KGSVSVLIWY 10 Unmodified _KGSVSVLIWY_ 0 0 0 REV__ENST00000448238.2_2_5:37022478-37024717:+|nuORF REV__ENST00000448238.2_2_5:37022478-37024717:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3267211914062 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 126.63 1 121.93 121.43 122.43 -4.6998 0 0 0 0.22588 1 24358 24358 10.824 2.6684 1 + 22923 21779 15129 15134 22732 22732 0.06935175545527272 KGTEVIINLWA 11 Unmodified _KGTEVIINLWA_ 0 0 0 ENSG00000148795|ENST00000369887|CYP17A1 ENSG00000148795|ENST00000369887|CYP17A1 ENSG00000148795|ENST00000369887|CYP17A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7611083984375 2 622.355888 1242.69722 0.69376 0.00043177 -1.0136 -0.00063081 -0.31982 -0.00019904 622.3553544463866 166.31 0.13293 161.36 161.25 161.38 -4.9484 5 3 2 0 0 0 0.85089 1 32549 32549 18.373 2.224 1 16738000 22924 4759 15130 15135 22733 22733 0.08558232119980858 KGTEWDSYFA 10 Unmodified _KGTEWDSYFA_ 0 0 0 REV__PTCH1|p.D860Y|1|0.18|ENSG00000185920|chr9:95461981-95461981|C/A|missense_variant REV__PTCH1|p.D860Y|1|0.18|ENSG00000185920|chr9:95461981-95461981|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2869873046875 2 602.269478 1202.5244 NaN NaN NaN NaN NaN NaN NaN 144.36 1 139.3 138.8 139.8 -5.0671 0 0 0 2.8426 1 27850 27850 0.063865 0.063865 1 + 22925 24523 15131 15136 22734 22734 -0.0687575900722095 KGTKKRKLK 9 Unmodified _KGTKKRKLK_ 0 0 0 REV__JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant REV__JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79345703125 2 543.877125 1085.7397 NaN NaN NaN NaN NaN NaN NaN 17.909 1 16.637 16.137 17.137 -1.2722 0 0 0 0.23508 1 2661 2661 0.52476 0 1 + 22926 23690 15132 15137 22735 22735 0.20025672038877929 KGTRFSASDL 10 Unmodified _KGTRFSASDL_ 0 0 0 ENST00000453595.1_1_X:36980271-36981156:-|nuORF ENST00000453595.1_1_X:36980271-36981156:-|nuORF ENST00000453595.1_1_X:36980271-36981156:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.283935546875 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 157.93 1 152.66 152.16 153.16 -5.2748 0 0 0 0.22588 1 30653 30653 11.495 1.4208 1 22927 10006 15133 15138 22736 22736 0.019316534665676954 KGTSSPLPS 9 Unmodified _KGTSSPLPS_ 0 0 0 REV__JPH3|p.L354Cfs*117|1|0.57|ENSG00000154118|chr16:87644931-87644931|C/-|frameshift_variant REV__JPH3|p.L354Cfs*117|1|0.57|ENSG00000154118|chr16:87644931-87644931|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2296142578125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 113.42 1 108.96 108.46 109.46 -4.4539 0 0 0 0.19669 1 22346 22346 0.12781 0 1 + 22928 23692 15134 15139 22737 22737 0.019015056264720442 KGTTTRRFVGH 11 Unmodified _KGTTTRRFVGH_ 0 0 0 ENST00000507261.1_1_5:180668485-180669312:-|nuORF ENST00000507261.1_1_5:180668485-180669312:-|nuORF ENST00000507261.1_1_5:180668485-180669312:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7586669921875 2 630.352003 1258.68945 NaN NaN NaN NaN NaN NaN NaN 169.58 1 164.71 164.21 165.21 -4.873 0 0 0 0.23087 1 33503 33503 7.609 0 1 22929 10695 15135 15140 22738 22738 0.07045517643086896 KGTVKWFN 8 Unmodified _KGTVKWFN_ 0 0 0 tr|U7SH82|U7SH82_FUSNUColdshock-likeproteinCspEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02217PE=4SV=1 tr|U7SH82|U7SH82_FUSNUColdshock-likeproteinCspEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02217PE=4SV=1 tr|U7SH82|U7SH82_FUSNUColdshock-likeproteinCspEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02217PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27093505859375 2 490.271627 978.528701 NaN NaN NaN NaN NaN NaN NaN 14.179 1 14.179 13.679 14.679 0 0 0 0 0.21486 1 2095 2095 2.3027 0 1 22930 25909 15136 15141 22739 22739 0.03857794996986286 KGVHTGTALY 10 Unmodified _KGVHTGTALY_ 0 0 0 REV__ENSG00000140395|ENST00000267973|SKIC8 REV__ENSG00000140395|ENST00000267973|SKIC8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6779174804688 2 523.785099 1045.55564 NaN NaN NaN NaN NaN NaN NaN 132.52 1 127.72 127.22 128.22 -4.799 0 0 0 0.22588 1 25509 25509 8.7454 0.15213 1 + 22931 16572 15137 15142 22740 22740 0.03468858817518594 KGVNAATT 8 Unmodified _KGVNAATT_ 0 0 0 REV__ENST00000396056.6_1_3:44700855-44701443:+|nuORF REV__ENST00000396056.6_1_3:44700855-44701443:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.20904541015625 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 99.636 1 95.68 95.18 96.18 -3.9564 0 0 0 0.2396 1 19133 19133 0.12286 0 1 + 22932 21275 15138 15143 22741 22741 0.01812967283501621 KGVPLIKKLKL 11 Unmodified _KGVPLIKKLKL_ 0 0 0 REV__CCDC160|p.*326L|1|0.52|ENSG00000203952|chrX:134245768-134245769|-/T|frameshift_variant REV__CCDC160|p.*326L|1|0.52|ENSG00000203952|chrX:134245768-134245769|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 618.9782104492188 2 618.941934 1235.86931 NaN NaN NaN NaN NaN NaN NaN 167.62 1 162.67 162.17 163.17 -4.948 0 0 0 0.23698 1 32992 32992 1.3295 0.25807 1 + 22933 13286 15139 15144 22742 22742 0.2608142859817235 KGVPPRWL 8 Unmodified _KGVPPRWL_ 0 0 0 ENST00000426335.6_1_11:47186635-47186776:-|nuORF ENST00000426335.6_1_11:47186635-47186776:-|nuORF ENST00000426335.6_1_11:47186635-47186776:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.19659423828125 3 318.19575 951.565421 NaN NaN NaN NaN NaN NaN NaN 87.473 1 87.473 86.973 87.973 0 0 0 0 0.21486 1 17078 17078 1.8442 0 1 22934 9722 15140 15145 22743 22743 0.08770091613553177 KGVTMKELK 9 Unmodified _KGVTMKELK_ 0 0 0 REV__ANKRD30B|p.D965Ifs*30|3|0.08|ENSG00000180777|chr18:14848778-14848778|A/-|frameshift_variant REV__ANKRD30B|p.D965Ifs*30|3|0.08|ENSG00000180777|chr18:14848778-14848778|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 517.310546875 2 517.307352 1032.60015 NaN NaN NaN NaN NaN NaN NaN 163.01 1 163.01 162.51 163.51 0 0 0 0 0.21434 1 32820 32820 19.362 1.2156 1 + 22935 13060 15141 15146 22744 22744 0.08515546639341665 KGWSCHWDRD 10 Unmodified _KGWSCHWDRD_ 0 0 0 FNBP4|p.K790Efs*7|1|0.34|ENSG00000109920|chr11:47724123-47724124|TT/-|frameshift_variant;FNBP4|p.G931Efs*17|1|0.32|ENSG00000109920|chr11:47722991-47722991|T/-|frameshift_variant;FNBP4|p.W950Vfs*7|1|0.22|ENSG00000109920|chr11:47720045-47720046|-/T|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENST00000525792.5_1_11:47746320-47755666:-|nuORF;FNBP4|p.P715Hfs*26|1|0.51|ENSG00000109920|chr11:47724643-47724643|G/-|frameshift_variant FNBP4|p.K790Efs*7|1|0.34|ENSG00000109920|chr11:47724123-47724124|TT/-|frameshift_variant FNBP4|p.K790Efs*7|1|0.34|ENSG00000109920|chr11:47724123-47724124|TT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 645.1216430664062 2 645.277646 1288.54074 NaN NaN NaN NaN NaN NaN NaN 169.97 1 165.1 164.6 165.6 -4.873 0 0 0 0.22588 1 33610 33610 2.7352 0.89096 1 22936 2548 15142 15147 22745 22745 -0.09198956322143204 KGWWPCYAEKD 11 Unmodified _KGWWPCYAEKD_ 0 0 0 nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5435485839844 3 461.544779 1381.61251 NaN NaN NaN NaN NaN NaN NaN 163.17 1 157.98 157.48 158.48 -5.1878 0 0 0 0.23698 1 31737 31737 1.3296 0.63198 1 22937 4153 15143 15148 22746 22746 -0.0630346168829874 KGYSELSMK 9 Unmodified _KGYSELSMK_ 0 0 0 REV__nc|ENSG00000128596|Q96JN2-2|CCDC136 REV__nc|ENSG00000128596|Q96JN2-2|CCDC136 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2662353515625 2 521.765517 1041.51648 -0.87801 -0.00045812 1.0803 0.00056366 0.20228 0.00010554 521.7658828027867 109 0.76398 104.55 104.12 104.88 -4.4518 27 21 2 0 0 0 0.31728 1 20970 20970 1.2148 0 1 1553400 + 22938 13281 15144 15149 22747 22747 -0.00261609528365625 KGYTKKWLHWH 11 Unmodified _KGYTKKWLHWH_ 0 0 0 REV__CTSS|p.K54Rfs*3|1|0.38|ENSG00000163131|chr1:150757946-150757946|T/-|frameshift_variant REV__CTSS|p.K54Rfs*3|1|0.38|ENSG00000163131|chr1:150757946-150757946|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.4022216796875 2 742.401496 1482.78844 NaN NaN NaN NaN NaN NaN NaN 124.07 1 124.07 123.57 124.57 0 0 0 0 0.23698 1 24458 24458 2.7352 0.23671 1 + 22939 13612 15145 15150 22748 22748 0.06635540607976509 KHAAKKVVK 9 Unmodified _KHAAKKVVK_ 0 0 0 nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A;SV2A|p.S127Efs*2|1|0.2|ENSG00000159164|chr1:149913466-149913467|-/C|frameshift_variant;SV2A|p.E138Gfs*16|1|0.03|ENSG00000159164|chr1:149913428-149913429|-/C|frameshift_variant;SV2A|p.E138Rfs*39|4|0.33|ENSG00000159164|chr1:149913429-149913429|C/-|frameshift_variant nc|ENSG00000159164|Q7L0J3-2|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.0569152832031 3 336.894071 1007.66038 NaN NaN NaN NaN NaN NaN NaN 4.4539 1 4.4539 3.9539 4.9539 0 0 0 0 0.19631 1 90 90 0.0033805 0.0033805 1 22940 5191 15146 15151 22749 22749 0.15686025084744415 KHAAKKVVK 9 Unmodified _KHAAKKVVK_ 0 0 0 nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A;SV2A|p.S127Efs*2|1|0.2|ENSG00000159164|chr1:149913466-149913467|-/C|frameshift_variant;SV2A|p.E138Gfs*16|1|0.03|ENSG00000159164|chr1:149913428-149913429|-/C|frameshift_variant;SV2A|p.E138Rfs*39|4|0.33|ENSG00000159164|chr1:149913429-149913429|C/-|frameshift_variant nc|ENSG00000159164|Q7L0J3-2|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.54766845703125 3 336.894071 1007.66038 NaN NaN NaN NaN NaN NaN NaN 179.8 1 179.8 179.3 180.3 0 0 0 0 0.19631 1 37248 37248 0.0033805 0.0033805 1 22941 5191 15146 15151 22750 22750 0.15686025084744415 KHAMHHWKVS 10 Unmodified _KHAMHHWKVS_ 0 0 0 REV__MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant REV__MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.74853515625 2 630.824566 1259.63458 NaN NaN NaN NaN NaN NaN NaN 9.4479 1 8.3834 7.8834 8.8834 -1.0645 0 0 0 0.22588 1 1010 1010 0.35063 0 1 + 22942 23878 15147 15152 22751 22751 0.015148075707884345 KHCELHNCC 9 Unmodified _KHCELHNCC_ 0 0 0 REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78857421875 2 543.717521 1085.42049 0.21093 0.00011469 0.59836 0.00032534 0.80929 0.00044003 544.220334725858 162.7 0.1736 157.56 157.47 157.64 -5.1438 5 4 2 0 0 0 0.64764 1 31610 31610 0.96228 0.036742 1 2681200 + 22943 22792 15148 15153 22752 22752 -0.11880403911754911 KHDILERVM 9 Unmodified _KHDILERVM_ 0 0 0 REV__nc|ENSG00000164418|Q13002-6|GRIK2 REV__nc|ENSG00000164418|Q13002-6|GRIK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2139892578125 3 380.877981 1139.61211 -0.15875 -6.0464E-05 3.3542 0.0012775 3.1954 0.0012171 380.8795029319209 62.963 0.20643 60.002 59.916 60.122 -2.9614 9 5 2 0 0 0 0.73814 1 12159 12159 4.5289 0.33936 1 426090 + 22944 17683 15149 15154 22753 22753 0.04789163382520201 KHEIEYLY 8 Unmodified _KHEIEYLY_ 0 0 0 WNK1|p.S2100Y|1|0.35|ENSG00000060237|chr12:897532-897532|C/A|missense_variant WNK1|p.S2100Y|1|0.35|ENSG00000060237|chr12:897532-897532|C/A|missense_variant WNK1|p.S2100Y|1|0.35|ENSG00000060237|chr12:897532-897532|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7821655273438 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 133.72 1 128.91 128.41 129.41 -4.8175 0 0 0 0.21323 1 25739 25739 14.582 2.9414 1 22945 26580 15150 15155 22754 22754 0.0013803672338781325 KHFKDYFP 8 Unmodified _KHFKDYFP_ 0 0 0 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2774658203125 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 159.8 1 154.57 154.07 155.07 -5.2299 0 0 0 0.2343 1 31020 31020 0.25148 0.18749 1 22946 3288 15151 15156 22755 22755 0.0022177765142714634 KHFKDYFP 8 Unmodified _KHFKDYFP_ 0 0 0 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2771606445312 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 176.65 1 171.75 171.25 172.25 -4.9008 0 0 0 0.21486 1 35221 35221 2.3027 0 1 22947 3288 15151 15156 22756 22756 0.0022177765142714634 KHFKDYFP 8 Unmodified _KHFKDYFP_ 0 0 0 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2776489257812 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 178.65 1 173.74 173.24 174.24 -4.9088 0 0 0 0.2396 1 35640 35640 0.0082765 0 1 22948 3288 15151 15156 22757 22757 0.0022177765142714634 KHFTKFSF 8 Unmodified _KHFTKFSF_ 0 0 0 tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1 tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1 tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 348.1705322265625 3 347.855394 1040.54435 NaN NaN NaN NaN NaN NaN NaN 28.396 1 26.641 26.141 27.141 -1.7552 0 0 0 0.23811 1 4791 4791 0.25148 0.2501 1 22949 26261 15152 15157 22758 22758 0.025700815140453415 KHFYWWEFIFI 11 Unmodified _KHFYWWEFIFI_ 0 0 0 REV__ENSG00000007341|ENST00000358039|ST7L REV__ENSG00000007341|ENST00000358039|ST7L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 539.6464233398438 3 539.274729 1614.80236 0.25982 0.00014011 -0.084363 -4.5495E-05 0.17546 9.462E-05 539.9410977341917 140.98 0.16968 140.98 140.86 141.03 0 9 4 3 0 0 0 0.82427 1 28086 28086 0.40827 0.32491 1 7182400 + 22950 13887 15153 15158 22759 22759 0.019547733163790326 KHFYWWEFIFI 11 Unmodified _KHFYWWEFIFI_ 0 0 0 REV__ENSG00000007341|ENST00000358039|ST7L REV__ENSG00000007341|ENST00000358039|ST7L MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 539.274729 1614.80236 0.25982 0.00014011 -0.084363 -4.5495E-05 0.17546 9.462E-05 539.9410977341917 140.98 0.16968 140.98 140.86 141.03 0 0.015837 -0.0062818 NaN 0.40827 9 4 3 NaN NaN NaN NaN 0 NaN NaN 0 7182400 + 22951 13887 15153 15158 0.019547733163790326 KHFYWWEFIFI 11 Unmodified _KHFYWWEFIFI_ 0 0 0 REV__ENSG00000007341|ENST00000358039|ST7L REV__ENSG00000007341|ENST00000358039|ST7L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 539.274729 1614.80236 0.25686 0.00013852 4.9628 0.0026763 5.2196 0.0028148 539.2781026667013 146.06 0.10635 140.95 140.89 141 -5.1108 -0.015837 0.0018835 NaN 0.40827 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 2128100 + 22952 13887 15153 15158 0.019547733163790326 KHFYWWEFIRQ 11 Unmodified _KHFYWWEFIRQ_ 0 0 0 REV__ENST00000497457.5_1_1:113121036-113161548:-|nuORF REV__ENST00000497457.5_1_1:113121036-113161548:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7809448242188 3 547.277132 1638.80957 0.31215 0.00017083 2.9205 0.0015983 3.2326 0.0017691 547.2788134631134 20.686 0.32245 20.686 20.562 20.885 0 12 8 2 0 0 0 0.89122 1 3434 3434 0.50596 0.41111 1 1316900 + 22953 22403 15154 15159 22760 22760 0.015715059168087464 KHGKKKKSK 9 Unmodified _KHGKKKKSK_ 0 0 0 REV__ENSG00000139174|ENST00000345127|PRICKLE1 REV__ENSG00000139174|ENST00000345127|PRICKLE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.1033935546875 3 356.904859 1067.69275 -0.32402 -0.00011564 0.63842 0.00022785 0.3144 0.00011221 356.9052274861482 34.454 0.49091 32.238 31.984 32.475 -2.2158 24 13 3 0 0 0 0.88158 1 6063 6063 1.9064 0 1 650300 + 22954 16505 15155 15160 22761 22761 0.1616081248773753 KHKAELTC 8 Unmodified _KHKAELTC_ 0 0 0 nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6 nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24761962890625 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 173.96 1 173.96 173.46 174.46 0 0 0 0 0.21486 1 35994 35994 11.64 3.047 1 22955 2978 15156 15161 22762 22762 0.012935583655689697 KHKGHKPP 8 Unmodified _KHKGHKPP_ 0 0 0 REV__TADA3|p.P101H|1|0.36|ENSG00000171148|chr3:9789869-9789869|G/T|missense_variant REV__TADA3|p.P101H|1|0.36|ENSG00000171148|chr3:9789869-9789869|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16949462890625 3 310.187366 927.540269 -0.56699 -0.00017587 0.66542 0.00020641 0.098432 3.0532E-05 310.1874863037228 16.46 0.61681 16.46 16.199 16.816 0 30 17 3 0 0 0 8448 1 2582 2582 0.62683 0.62683 1 767970 + 22956 24767 15157 15162 22763 22763 0.07360036810985093 KHKGHKPP 8 Unmodified _KHKGHKPP_ 0 0 0 REV__TADA3|p.P101H|1|0.36|ENSG00000171148|chr3:9789869-9789869|G/T|missense_variant REV__TADA3|p.P101H|1|0.36|ENSG00000171148|chr3:9789869-9789869|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 310.187366 927.540269 -0.43852 -0.00013602 0.63703 0.0001976 0.19851 6.1576E-05 310.1874788069171 17.746 0.45408 16.436 16.307 16.761 -1.3109 -0.019263 0.0001003 NaN 0.62683 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 280140 + 22957 24767 15157 15162 0.07360036810985093 KHKGHKPP 8 Unmodified _KHKGHKPP_ 0 0 0 REV__TADA3|p.P101H|1|0.36|ENSG00000171148|chr3:9789869-9789869|G/T|missense_variant REV__TADA3|p.P101H|1|0.36|ENSG00000171148|chr3:9789869-9789869|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 310.187366 927.540269 -0.42011 -0.00013031 0.2671 8.2851E-05 -0.15301 -4.7461E-05 310.18738254589715 17.741 0.41249 16.469 16.283 16.696 -1.2722 0.013904 -0.00024394 NaN 0.62683 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 488280 + 22958 24767 15157 15162 0.07360036810985093 KHKGKMPLR 9 Unmodified _KHKGKMPLR_ 0 0 0 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7857055664062 2 547.834403 1093.65425 NaN NaN NaN NaN NaN NaN NaN 141.93 1 141.93 141.43 142.43 0 0 0 0 0.19632 1 28293 28293 0.073264 0.069883 1 22959 7426 15158 15163 22764 22764 0.1111718358156395 KHKKLILKLL 10 Unmodified _KHKKLILKLL_ 0 0 0 REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 617.3515625 2 617.442101 1232.86965 NaN NaN NaN NaN NaN NaN NaN 164.11 1 159.04 158.54 159.54 -5.0648 0 0 0 2.8426 1 31980 31980 0.13989 0.13989 1 + 22960 20304 15159 15164 22765 22765 0.2625284831804038 KHKQADDMP 9 Unmodified _KHKQADDMP_ 0 0 0 tr|U7SX97|U7SX97_FUSNUtRNA(guanine-N(1)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmDPE=3SV=1 tr|U7SX97|U7SX97_FUSNUtRNA(guanine-N(1)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmDPE=3SV=1 tr|U7SX97|U7SX97_FUSNUtRNA(guanine-N(1)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmDPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.0723876953125 3 357.174686 1068.50223 0.24823 8.8663E-05 0.23958 8.557E-05 0.48781 0.00017423 357.1749501455709 65.86 0.21255 62.402 62.243 62.455 -3.4581 7 5 2 0 0 0 0.8825 1 12333 12333 1.0715 1.0715 1 500980 22961 26265 15160 15165 22766 22766 -0.029282619566629364 KHLHRTKKKDW 11 Unmodified _KHLHRTKKKDW_ 0 0 0 REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 738.93408203125 2 738.930951 1475.84735 NaN NaN NaN NaN NaN NaN NaN 65.461 1 65.461 64.961 65.961 0 0 0 0 0.23698 1 12623 12623 1.3295 0.13619 1 + 22962 23489 15161 15166 22767 22767 0.1284601690231284 KHLIRIHRDLE 11 Unmodified _KHLIRIHRDLE_ 0 0 0 REV__ZNF536|p.P299Afs*74|1|0.33|ENSG00000198597|chr19:30444453-30444454|-/A|frameshift_variant REV__ZNF536|p.P299Afs*74|1|0.33|ENSG00000198597|chr19:30444453-30444454|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 477.28497314453125 3 477.284398 1428.83137 NaN NaN NaN NaN NaN NaN NaN 7.0847 1 6.0401 5.5401 6.5401 -1.0446 0 0 0 0.22632 1 574 574 0 0 1 + 22963 19426 15162 15167 22768 22768 0.1341031066542655 KHMKASAMHY 10 Unmodified _KHMKASAMHY_ 0 0 0 REV__APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant REV__APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2918090820312 2 602.291711 1202.56887 NaN NaN NaN NaN NaN NaN NaN 51.588 1 48.537 48.037 49.037 -3.0517 0 0 0 2.8426 1 9510 9510 0.043787 0 1 + 22964 13079 15163 15168 22769 22769 -0.024313496664035483 KHNLLLHLKK 10 Unmodified _KHNLLLHLKK_ 0 0 0 ENSG00000147592|ENST00000276590|LACTB2 ENSG00000147592|ENST00000276590|LACTB2 ENSG00000147592|ENST00000276590|LACTB2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7653198242188 2 622.403507 1242.79246 NaN NaN NaN NaN NaN NaN NaN 18.411 1 18.411 17.911 18.911 0 0 0 0 0.22588 1 2961 2961 3.2813 0.28607 1 22965 4711 15164 15169 22770 22770 0.18077630101674913 KHQKINARE 9 Unmodified _KHQKINARE_ 0 0 0 ENSG00000198182|ENST00000355202|ZNF607;nc|ENSG00000198182|Q96SK3-3|ZNF607 ENSG00000198182|ENST00000355202|ZNF607 ENSG00000198182|ENST00000355202|ZNF607 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21673583984375 3 375.215873 1122.62579 NaN NaN NaN NaN NaN NaN NaN 116.67 1 112.31 111.81 112.81 -4.3585 0 0 0 0.23508 1 22460 22460 4.1895 1.4543 1 22966 7436 15165 15170 22771 22771 0.06938157205991047 KHQKLLLL 8 Unmodified _KHQKLLLL_ 0 0 0 REV__BAZ1A|p.E200Nfs*25|1|0.39|ENSG00000198604|chr14:34810976-34810976|T/-|frameshift_variant REV__BAZ1A|p.E200Nfs*25|1|0.39|ENSG00000198604|chr14:34810976-34810976|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 496.9650573730469 2 496.834394 991.654236 NaN NaN NaN NaN NaN NaN NaN 8.0081 1 7.3289 6.8289 7.8289 -0.67913 0 0 0 0.2396 1 788 788 0.30703 0.10017 1 + 22967 13179 15166 15171 22772 22772 0.15807506853229825 KHQSFSQT 8 Unmodified _KHQSFSQT_ 0 0 0 ENST00000405334.5_1_2:37334471-37336383:-|nuORF ENST00000405334.5_1_2:37334471-37336383:-|nuORF ENST00000405334.5_1_2:37334471-37336383:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76953125 2 481.738148 961.461744 0.59257 0.00028546 -1.0362 -0.00049918 -0.44365 -0.00021372 481.7379012993915 108.69 0.9428 104.51 104.25 105.19 -4.1826 37 26 2 0 0 0 0.66265 1 20889 20889 18.135 5.6034 1 1004400 22968 9531 15167 15172 22773 22773 -0.02052860284743474 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 65.937 1 65.937 65.437 66.437 0 0 0 0 0.23508 1 12726 12726 4.897 2.1618 1 22969 208 15168 15173 22774 22774 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20123291015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 66.531 1 66.531 66.031 67.031 0 0 0 0 0.23508 1 12852 12852 4.897 2.1618 1 22970 208 15168 15173 22775 22775 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 73.557 1 73.557 73.057 74.057 0 0 0 0 0.23508 1 14275 14275 2.4985 1.3051 1 22971 208 15168 15173 22776 22776 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 76.07 1 76.07 75.57 76.57 0 0 0 0 0.23508 1 14781 14781 4.897 2.1618 1 22972 208 15168 15173 22777 22777 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 82.438 1 82.438 81.938 82.938 0 0 0 0 0.23508 1 16061 16061 2.4985 0.59211 1 22973 208 15168 15173 22778 22778 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2018737792969 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 97.75 1 97.75 97.25 98.25 0 0 0 0 0.23508 1 19156 19156 2.4985 0 1 22974 208 15168 15173 22779 22779 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2093811035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112.02 1 112.02 111.52 112.52 0 0 0 0 0.23508 1 22038 22038 2.4985 0.65425 1 22975 208 15168 15173 22780 22780 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112.46 1 112.46 111.96 112.96 0 0 0 0 0.23508 1 22125 22125 2.4985 0 1 22976 208 15168 15173 22781 22781 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201904296875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 116.99 1 116.99 116.49 117.49 0 0 0 0 0.23508 1 23041 23041 0.96228 0 1 22977 208 15168 15173 22782 22782 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2012939453125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 79.498 1 75.988 75.488 76.488 -3.5102 0 0 0 0.23508 1 15524 15524 8.1555 2.8586 1 22978 208 15168 15173 22783 22783 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013244628906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 134.6 1 129.96 129.46 130.46 -4.6399 0 0 0 0.23508 1 26544 26544 2.4985 0 1 22979 208 15168 15173 22784 22784 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 138.59 1 133.95 133.45 134.45 -4.6413 0 0 0 0.23508 1 27365 27365 4.897 0.95262 1 22980 208 15168 15173 22785 22785 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 69.969 1 66.39 65.89 66.89 -3.5798 0 0 0 0.23508 1 13181 13181 8.1555 3.2585 1 22981 208 15168 15173 22786 22786 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20086669921875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 83.278 1 79.404 78.904 79.904 -3.8736 0 0 0 0.23508 1 15817 15817 4.897 2.3985 1 22982 208 15168 15173 22787 22787 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2013854980469 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 125.72 1 120.95 120.45 121.45 -4.7681 0 0 0 0.23508 1 24127 24127 2.4985 0.65425 1 22983 208 15168 15173 22788 22788 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20086669921875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 134.24 1 129.37 128.87 129.87 -4.8726 0 0 0 0.23508 1 25788 25788 2.4985 1.3051 1 22984 208 15168 15173 22789 22789 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 69.897 1 66.43 65.93 66.93 -3.467 0 0 0 0.23508 1 13225 13225 4.897 2.1618 1 22985 208 15168 15173 22790 22790 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2009582519531 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 79.902 1 76.226 75.726 76.726 -3.676 0 0 0 0.23508 1 15228 15228 8.1555 0 1 22986 208 15168 15173 22791 22791 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2008361816406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 80.138 1 76.462 75.962 76.962 -3.676 0 0 0 0.23508 1 15274 15274 4.897 2.1618 1 22987 208 15168 15173 22792 22792 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20086669921875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 82.855 1 79.157 78.657 79.657 -3.6985 0 0 0 0.23508 1 15806 15806 4.897 1.6157 1 22988 208 15168 15173 22793 22793 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201171875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 93.221 1 89.377 88.877 89.877 -3.844 0 0 0 0.23508 1 17870 17870 10.151 1.995 1 22989 208 15168 15173 22794 22794 0.0461712798901317 KHQVLLEDP 9 Unmodified _KHQVLLEDP_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 116.8 1 112.44 111.94 112.94 -4.3585 0 0 0 0.23508 1 22486 22486 2.4985 0 1 22990 208 15168 15173 22795 22795 0.0461712798901317 KHRALIMAVL 10 Unmodified _KHRALIMAVL_ 0 0 0 REV__ENST00000508252.1_1_5:137463382-137465094:-|nuORF REV__ENST00000508252.1_1_5:137463382-137465094:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33154296875 2 576.357711 1150.70087 NaN NaN NaN NaN NaN NaN NaN 144.64 1 139.57 139.07 140.07 -5.0671 0 0 0 2.8426 1 27914 27914 0.84494 0.57955 1 + 22991 15322 15169 15174 22796 22796 0.1315462341285638 KHREQLVIE 9 Unmodified _KHREQLVIE_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.330078125 2 576.330205 1150.64586 0.29245 0.00016855 -3.6785 -0.00212 -3.386 -0.0019515 576.8283287748566 124.7 0.14607 124.7 124.58 124.72 0 6 3 2 0 0 0 0.66316 1 24595 24595 8.7454 0.3011 1 1753400 22992 2678 15170 15175 22797 22797 0.0765590814596635 KHRKSRVAP 9 Unmodified _KHRKSRVAP_ 0 0 0 REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31 REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.206298828125 3 360.224591 1077.65194 NaN NaN NaN NaN NaN NaN NaN 43.707 1 40.917 40.417 41.417 -2.79 0 0 0 0.23508 1 8197 8197 2.2828 0.80087 1 + 22993 16847 15171 15176 22798 22798 0.11622471168129778 KHRRFWRMITY 11 Unmodified _KHRRFWRMITY_ 0 0 0 REV__ENST00000463516.5_1_7:45003626-45005995:-|nuORF REV__ENST00000463516.5_1_7:45003626-45005995:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 531.6917114257812 3 531.957628 1592.85106 NaN NaN NaN NaN NaN NaN NaN 166.07 1 166.07 165.57 166.57 0 0 0 0 0.22632 1 33783 33783 3.0723 2.5663 1 + 22994 21920 15172 15177 22799 22799 0.07834363404526812 KHSEKVHV 8 Unmodified _KHSEKVHV_ 0 0 0 ENSG00000149212|ENST00000536441|SESN3;nc|ENSG00000149212|P58005-4|SESN3;nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1 ENSG00000149212|ENST00000536441|SESN3 ENSG00000149212|ENST00000536441|SESN3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 482.27349853515625 2 482.272158 962.529764 NaN NaN NaN NaN NaN NaN NaN 174.36 1 169.47 168.97 169.97 -4.8916 0 0 0 0.23025 1 34710 34710 0.68139 0.55853 1 22995 4775 15173 15178 22800 22800 0.04700009365899405 KHSEYRVFYCL 11 Unmodified _KHSEYRVFYCL_ 0 0 0 REV__LRP12|p.N848Tfs*39|1|0.32|ENSG00000147650|chr8:104490710-104490710|T/-|frameshift_variant REV__LRP12|p.N848Tfs*39|1|0.32|ENSG00000147650|chr8:104490710-104490710|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7744445800781 3 482.239578 1443.69691 NaN NaN NaN NaN NaN NaN NaN 114.22 1 109.75 109.25 110.25 -4.4726 0 0 0 0.22632 1 22508 22508 0.03141 0 1 + 22996 23810 15174 15179 22801 22801 -0.007195108714995513 KHSVKFGRV 9 Unmodified _KHSVKFGRV_ 0 0 0 REV__ENST00000216160.10_1_22:39827477-39827837:+|nuORF REV__ENST00000216160.10_1_22:39827477-39827837:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 353.2147216796875 3 353.213692 1056.61925 NaN NaN NaN NaN NaN NaN NaN 175.75 1 175.75 175.25 176.25 0 0 0 0 0.23508 1 36408 36408 0.96228 0.50394 1 + 22997 20008 15175 15180 22802 22802 0.09320264045277327 KHVRLKERKLQ 11 Unmodified _KHVRLKERKLQ_ 0 0 0 REV__nc|ENSG00000129566|Q99973-2|TEP1 REV__nc|ENSG00000129566|Q99973-2|TEP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7243957519531 3 478.972043 1433.8943 NaN NaN NaN NaN NaN NaN NaN 74.857 1 71.493 70.993 71.993 -3.3643 0 0 0 0.23698 1 14606 14606 0.45452 0.35968 1 + 22998 15967 15176 15181 22803 22803 0.19470876453442543 KHVRQLKILL 10 Unmodified _KHVRQLKILL_ 0 0 0 tr|U7SYX9|U7SYX9_FUSNUCobalt/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00856PE=4SV=1 tr|U7SYX9|U7SYX9_FUSNUCobalt/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00856PE=4SV=1 tr|U7SYX9|U7SYX9_FUSNUCobalt/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00856PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 624.4200439453125 2 624.419157 1246.82376 NaN NaN NaN NaN NaN NaN NaN 42.611 1 39.96 39.46 40.46 -2.651 0 0 0 0.22588 1 7675 7675 0.40072 0 1 22999 26287 15177 15182 22804 22804 0.2102220313579437 KHYHKEYRQLY 11 Unmodified _KHYHKEYRQLY_ 0 0 0 ENST00000461513.1_1_17:49579856-49580498:-|nuORF ENST00000461513.1_1_17:49579856-49580498:-|nuORF ENST00000461513.1_1_17:49579856-49580498:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2723388671875 3 522.272158 1563.79465 NaN NaN NaN NaN NaN NaN NaN 72.315 1 68.688 68.188 69.188 -3.6275 0 0 0 0.22632 1 13656 13656 1.4551 0 1 23000 10073 15178 15183 22805 22805 0.03530014048851626 KIAKKYAK 8 Unmodified _KIAKKYAK_ 0 0 0 REV__tr|U7SR09|U7SR09_FUSNUProteinAbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01744PE=4SV=1 REV__tr|U7SR09|U7SR09_FUSNUProteinAbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01744PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1544189453125 3 317.211289 948.612037 -0.62047 -0.00019682 0.47391 0.00015033 -0.14656 -4.6489E-05 317.2113529740349 14.635 0.55887 13.462 13.279 13.838 -1.173 38 15 4 0 0 0 1.0252 1 1973 1973 3.2813 0.99853 1 2044700 + 23001 25025 15179 15184 22806 22806 0.1356753144484628 KIAQPLQR 8 Unmodified _KIAQPLQR_ 0 0 0 REV__nc|ENSG00000141568|Q01167-2|FOXK2 REV__nc|ENSG00000141568|Q01167-2|FOXK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0469665527344 3 318.534543 952.581799 -0.47704 -0.00015195 0.21369 6.8069E-05 -0.26334 -8.3884E-05 318.53460326194113 35.06 0.5188 35.06 34.791 35.31 0 33 14 4 0 0 0 1.0158 1 6444 6444 6.2058 1.6769 1 4247000 + 23002 16640 15180 15185 22807 22807 0.10361172779653316 KIASLLGLL 9 Unmodified _KIASLLGLL_ 0 0 0 ENSG00000149262|ENST00000534064|INTS4;INTS4|p.K101Q|1|0.08|ENSG00000149262|chr11:77981522-77981522|T/G|missense_variant;nc|ENSG00000149262|Q96HW7-2|INTS4 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2462463378906 2 464.315503 926.616454 0.43961 0.00020412 -0.56451 -0.00026211 -0.1249 -5.7991E-05 464.3152531085772 159.77 0.56572 154.52 154.26 154.82 -5.2526 23 15 2 0 0 0 0.60489 1 31005 31005 2.8137 0 1 1037800 23003 4780 15181 15186 22808 22808 0.15020995867757847 KICEILQAE 9 Unmodified _KICEILQAE_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant;CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6857299804688 2 523.781167 1045.54778 NaN NaN NaN NaN NaN NaN NaN 115.03 1 115.03 114.53 115.53 0 0 0 0 0.23508 1 22634 22634 8.7454 1.4562 1 23004 3001 15182 15187 22809 22809 0.026829635057310952 KIDGEVYVF 9 Unmodified _KIDGEVYVF_ 0 0 0 REV__ENST00000429744.2_1_1:52645740-52646091:+|nuORF REV__ENST00000429744.2_1_1:52645740-52646091:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5571594238281 3 357.19033 1068.54916 NaN NaN NaN NaN NaN NaN NaN 86.321 1 86.321 85.821 86.821 0 0 0 0 0.23508 1 16848 16848 6.1918 1.663 1 + 23005 21604 15183 15188 22810 22810 0.017629208661446683 KIDGKTIGV 9 Unmodified _KIDGKTIGV_ 0 0 0 RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant;ENSG00000003756|ENST00000347869|RBM5;ENST00000494360.5_1_3:50144211-50147205:+|nuORF RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2408752441406 2 465.784567 929.554582 -0.1017 -4.737E-05 0.089899 4.1874E-05 -0.0118 -5.4963E-06 465.7846197283942 46.81 0.41367 43.969 43.764 44.178 -2.8409 20 11 2 0 0 0 0.37645 1 8844 8844 45.74 7.5643 1 1895900 23006 970 15184 15189 22811 22811 0.08698644448622872 KIDGKTIGV 9 Unmodified _KIDGKTIGV_ 0 0 0 RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant;ENSG00000003756|ENST00000347869|RBM5;ENST00000494360.5_1_3:50144211-50147205:+|nuORF RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.784567 929.554582 -0.041228 -1.9203E-05 0.091902 4.2807E-05 0.050675 2.3604E-05 465.7844753018779 46.976 0.37843 44.034 43.79 44.168 -2.9421 0.015403 0.00020696 NaN 45.74 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2255200 23007 970 15184 15189 0.08698644448622872 KIDGKTIGV 9 Unmodified _KIDGKTIGV_ 0 0 0 RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant;ENSG00000003756|ENST00000347869|RBM5;ENST00000494360.5_1_3:50144211-50147205:+|nuORF RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 465.784567 929.554582 -0.09324 -4.343E-05 -0.18276 -8.5126E-05 -0.276 -0.00012856 465.78445749722175 46.985 0.4144 44.035 43.739 44.154 -2.9499 0.015911 -4.8909E-05 NaN 45.74 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1837900 23008 970 15184 15189 0.08698644448622872 KIDSFNSLY 9 Unmodified _KIDSFNSLY_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant;EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77783203125 2 543.776939 1085.53933 0.55065 0.00029943 -0.69725 -0.00037915 -0.1466 -7.9717E-05 543.7768846393423 106.69 0.70808 106.69 106.26 106.97 0 30 19 2 0 0 0 0.13932 2 20946 20924;20946 45.7 1.2926 1 2032400 23009 1798 15185 15190 22812;22813 22813 -2.267139211653557E-05 KIDSFNSLY 9 Unmodified _KIDSFNSLY_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant;EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7865600585938 2 543.776939 1085.53933 -0.087869 -4.7781E-05 0.1664 9.0482E-05 0.078526 4.2701E-05 543.7769675306715 111.21 0.52005 106.79 106.48 107 -4.4231 31 14 3 0 0 0 0.063365 1 21917 21917 66.457 11.683 1 3342600 23010 1798 15185 15190 22814 22814 -2.267139211653557E-05 KIDSFNSLY 9 Unmodified _KIDSFNSLY_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant;EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7767333984375 2 543.776939 1085.53933 0.70597 0.00038389 0.17411 9.4677E-05 0.88008 0.00047856 543.7766967791914 110.9 0.56061 106.67 106.38 106.94 -4.2289 34 15 4 0 0 0 0.10573 2 21364 21317;21364 53.833 16.872 1 2875300 23011 1798 15185 15190 22815;22816 22816 -2.267139211653557E-05 KIDSFNSLY 9 Unmodified _KIDSFNSLY_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant;EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.776939 1085.53933 -0.090462 -4.9191E-05 0.6217 0.00033807 0.53124 0.00028887 543.7772022224224 111.2 0.52832 106.71 106.47 107 -4.4915 -0.0018341 0.00046784 NaN 66.457 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3084700 23012 1798 15185 15190 -2.267139211653557E-05 KIEASVKMELI 11 Unmodified _KIEASVKMELI_ 0 0 0 REV__ENSG00000130147|ENST00000392011|SH3BP4 REV__ENSG00000130147|ENST00000392011|SH3BP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7787475585938 2 630.865231 1259.71591 NaN NaN NaN NaN NaN NaN NaN 146.64 1 146.64 146.14 147.14 0 0 0 0 0.22914 1 29326 29326 8.9762 0.23084 1 + 23013 15986 15186 15191 22817 22817 0.09644025699549275 KIEEGHIGVYY 11 Unmodified _KIEEGHIGVYY_ 0 0 0 ENST00000519872.1_1_8:37594193-37598024:+|nuORF;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2;ENSG00000147475|ENST00000519638|ERLIN2 ENST00000519872.1_1_8:37594193-37598024:+|nuORF ENST00000519872.1_1_8:37594193-37598024:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2276611328125 3 436.559194 1306.65575 -0.12601 -5.5012E-05 0.3093 0.00013503 0.18329 8.0016E-05 436.5593036719696 85.743 0.59206 82.015 81.752 82.344 -3.7289 36 16 3 0 0 0 0.70174 1 16401 16401 11.631 0.73241 1 3235100 23014 4704 15187 15192 22818 22818 0.014690513606865352 KIEFREHLWRR 11 Unmodified _KIEFREHLWRR_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.395751953125 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 115.05 1 115.05 114.55 115.55 0 0 0 0 0.22632 1 22640 22640 0.50596 0 1 + 23015 17209 15188 15193 22819 22819 0.10713401931002409 KIEFREHLWRR 11 Unmodified _KIEFREHLWRR_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3843383789062 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 126.81 1 122.19 121.69 122.69 -4.6172 0 0 0 0.22632 1 25006 25006 0.094841 0 1 + 23016 17209 15188 15193 22820 22820 0.10713401931002409 KIEFREHLWRR 11 Unmodified _KIEFREHLWRR_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3986206054688 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 134.14 1 129.26 128.76 129.76 -4.8726 0 0 0 0.22632 1 25769 25769 0.094841 0 1 + 23017 17209 15188 15193 22821 22821 0.10713401931002409 KIEFREHLWRR 11 Unmodified _KIEFREHLWRR_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.395751953125 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 122.06 1 117.53 117.03 118.03 -4.5305 0 0 0 0.22632 1 23500 23500 0.094841 0 1 + 23018 17209 15188 15193 22822 22822 0.10713401931002409 KIEFREHLWRR 11 Unmodified _KIEFREHLWRR_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3935546875 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 124.09 1 119.49 118.99 119.99 -4.5926 0 0 0 0.22632 1 23880 23880 0.094841 0 1 + 23019 17209 15188 15193 22823 22823 0.10713401931002409 KIEHKIKKKKV 11 Unmodified _KIEHKIKKKKV_ 0 0 0 REV__CSNK2A3|p.R80H|1|0.2|ENSG00000254598|chr11:11352881-11352881|C/T|missense_variant REV__CSNK2A3|p.R80H|1|0.2|ENSG00000254598|chr11:11352881-11352881|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2447204589844 3 460.313406 1377.91839 NaN NaN NaN NaN NaN NaN NaN 123.57 1 118.99 118.49 119.49 -4.5757 0 0 0 0.23698 1 24358 24358 0.45452 0 1 + 23020 13598 15189 15194 22824 22824 0.2445471688708949 KIEHKIKKKKV 11 Unmodified _KIEHKIKKKKV_ 0 0 0 REV__CSNK2A3|p.R80H|1|0.2|ENSG00000254598|chr11:11352881-11352881|C/T|missense_variant REV__CSNK2A3|p.R80H|1|0.2|ENSG00000254598|chr11:11352881-11352881|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2339172363281 3 460.313406 1377.91839 NaN NaN NaN NaN NaN NaN NaN 88.91 1 84.914 84.414 85.414 -3.9953 0 0 0 0.22632 1 16942 16942 0.00056442 0.00056442 1 + 23021 13598 15189 15194 22825 22825 0.2445471688708949 KIEHKIKKKKV 11 Unmodified _KIEHKIKKKKV_ 0 0 0 REV__CSNK2A3|p.R80H|1|0.2|ENSG00000254598|chr11:11352881-11352881|C/T|missense_variant REV__CSNK2A3|p.R80H|1|0.2|ENSG00000254598|chr11:11352881-11352881|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2475280761719 3 460.313406 1377.91839 NaN NaN NaN NaN NaN NaN NaN 4.4052 1 3.3963 2.8963 3.8963 -1.0089 0 0 0 0.23698 1 69 69 0.094841 0.094841 1 + 23022 13598 15189 15194 22826 22826 0.2445471688708949 KIEKVKSKR 9 Unmodified _KIEKVKSKR_ 0 0 0 REV__nc|ENSG00000111247|Q96B01-3|RAD51AP1 REV__nc|ENSG00000111247|Q96B01-3|RAD51AP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 558.3672485351562 2 558.36659 1114.71863 NaN NaN NaN NaN NaN NaN NaN 175.8 1 175.8 175.3 176.3 0 0 0 0 0.19627 1 36418 36418 0.0033805 0 1 + 23023 15236 15190 15195 22827 22827 0.1658566193934803 KIFIARRSL 9 Unmodified _KIFIARRSL_ 0 0 0 nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 551.8883056640625 2 552.356025 1102.6975 0.32595 0.00018004 -0.55795 -0.00030819 -0.232 -0.00012815 552.8587449128073 157.62 0.13861 157.62 157.52 157.65 0 5 3 2 0 0 0 0.87258 1 31640 31640 0.45834 0 1 788090 23024 1283 15191 15196 22828 22828 0.1502569663050508 KIFINLPRS 9 Unmodified _KIFINLPRS_ 0 0 0 ENST00000587807.5_1_18:54270260-54293401:-|nuORF;ENSG00000091164|ENST00000217515|TXNL1 ENST00000587807.5_1_18:54270260-54293401:-|nuORF ENST00000587807.5_1_18:54270260-54293401:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7716674804688 2 544.334759 1086.65496 0.14568 7.9297E-05 -0.0083607 -4.551E-06 0.13732 7.4746E-05 544.3331716782928 149.28 0.13472 144.08 144.01 144.15 -5.1994 5 3 2 0 0 0 0.81359 1 28916 28916 7.609 4.8738 1 660230 23025 1806 15192 15197 22829 22829 0.11510301502266884 KIFKKLTRVK 10 Unmodified _KIFKKLTRVK_ 0 0 0 REV__SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant REV__SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7607421875 2 630.929357 1259.84416 NaN NaN NaN NaN NaN NaN NaN 38.028 1 38.028 37.528 38.528 0 0 0 0 2.8426 1 7044 7044 0 0 1 + 23026 17545 15193 15198 22830 22830 0.22463373795562802 KIFKKLTRVK 10 Unmodified _KIFKKLTRVK_ 0 0 0 REV__SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant REV__SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7646484375 2 630.929357 1259.84416 0.60655 0.00038269 -2.7691 -0.0017471 -2.1626 -0.0013644 630.9287229521207 151.89 0.14355 146.72 146.63 146.77 -5.1759 5 3 2 0 0 0 1.1347 1 29425 29425 0.0013812 0.0013812 1 1254700 + 23027 17545 15193 15198 22831 22831 0.22463373795562802 KIFLLKVLLP 10 Unmodified _KIFLLKVLLP_ 0 0 0 ENST00000495716.1_1_3:52407964-52408519:+|nuORF;ENST00000556218.5_1_14:102349680-102375988:+|nuORF;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant;ENSG00000078304|ENST00000694906|PPP2R5C ENST00000495716.1_1_3:52407964-52408519:+|nuORF ENST00000495716.1_1_3:52407964-52408519:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 395.3152770996094 3 395.277411 1182.8104 NaN NaN NaN NaN NaN NaN NaN 176.59 1 171.72 171.22 172.22 -4.8739 0 0 0 0.22588 1 35132 35132 0 0 1 23028 1577 15194 15199 22832 22832 0.22630952303848062 KIFSGVFVKV 10 Unmodified _KIFSGVFVKV_ 0 0 0 nc|ENSG00000146223|Q6DKI1-2|RPL7L1;RPL7L1|p.Q126Pfs*38|1|0.24|ENSG00000146223|chr6:42884698-42884699|-/C|frameshift_variant;ENSG00000146223|ENST00000493763|RPL7L1;ENST00000530523.1_1_8:42580956-42581139:-|nuORF;ENST00000462348.1_1_6:42848614-42854030:+|nuORF;ENST00000397415.7_1_6:42848808-42854199:+|nuORF nc|ENSG00000146223|Q6DKI1-2|RPL7L1 nc|ENSG00000146223|Q6DKI1-2|RPL7L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.215576171875 3 375.233982 1122.68012 NaN NaN NaN NaN NaN NaN NaN 134.84 1 129.97 129.47 130.47 -4.8726 0 0 0 2.8426 1 25901 25901 3.8763 3.8031 1 23029 4645 15195 15200 22833 22833 0.12368356304864392 KIGDEPPKV 9 Unmodified _KIGDEPPKV_ 0 0 0 nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1;nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1 nc|ENSG00000178053|P58340-5|MLF1 nc|ENSG00000178053|P58340-5|MLF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 328.4942932128906 3 328.190442 981.549496 -0.38596 -0.00012667 0.29677 9.7396E-05 -0.089191 -2.9272E-05 328.1904724536479 36.791 2.3174 36.791 36.07 38.388 0 184 65 4 0 0 0 0.27464 1 7016 7016 30.703 21.952 1 9962800 23030 6554 15196 15201 22834 22834 0.05798340585988626 KIGDEPPKV 9 Unmodified _KIGDEPPKV_ 0 0 0 nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1;nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1 nc|ENSG00000178053|P58340-5|MLF1 nc|ENSG00000178053|P58340-5|MLF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 328.02349853515625 3 328.190442 981.549496 -0.55371 -0.00018172 0.36053 0.00011832 -0.19318 -6.3401E-05 328.19051180306786 39.537 2.2921 36.987 35.978 38.27 -2.5491 205 64 4 0 0 0 0.85359 1 7498 7498 2.2828 1.9757 1 12294000 23031 6554 15196 15201 22835 22835 0.05798340585988626 KIGDEPPKV 9 Unmodified _KIGDEPPKV_ 0 0 0 nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1;nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1 nc|ENSG00000178053|P58340-5|MLF1 nc|ENSG00000178053|P58340-5|MLF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 328.4945983886719 3 328.190442 981.549496 0.022931 7.5256E-06 -0.2168 -7.1153E-05 -0.19387 -6.3627E-05 328.19030983971055 39.295 2.2163 36.853 36.089 38.306 -2.4419 193 62 4 0 0 0 0.27464 1 7229 7229 42.232 30.005 1 13192000 23032 6554 15196 15201 22836 22836 0.05798340585988626 KIGDEPPKV 9 Unmodified _KIGDEPPKV_ 0 0 0 nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1;nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1 nc|ENSG00000178053|P58340-5|MLF1 nc|ENSG00000178053|P58340-5|MLF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 328.190442 981.549496 -0.54541 -0.000179 0.35777 0.00011742 -0.18764 -6.1583E-05 328.19051635608355 39.282 2.2088 36.877 36.058 38.267 -2.4049 -0.00042971 0.00013579 NaN 30.703 191 62 4 NaN NaN NaN NaN 0 NaN NaN 0 10672000 23033 6554 15196 15201 0.05798340585988626 KIGEPITQA 9 Unmodified _KIGEPITQA_ 0 0 0 REV__ENSG00000184860|ENST00000328945|SDR42E1 REV__ENSG00000184860|ENST00000328945|SDR42E1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7277526855469 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 50.01 1 50.01 49.51 50.51 0 0 0 0 0.19669 1 9463 9463 4.7159 0 1 + 23034 18917 15197 15202 22837 22837 0.05430054068926893 KIGIQHPSY 9 Unmodified _KIGIQHPSY_ 0 0 0 REV__ENSG00000159069|ENST00000325285|FBXW5 REV__ENSG00000159069|ENST00000325285|FBXW5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2615356445312 2 521.787641 1041.56073 0.70624 0.00036851 1.4891 0.00077701 2.1954 0.0011455 521.7883586927564 109.37 0.74484 105.19 104.83 105.58 -4.1826 28 20 2 0 0 0 0.58699 1 21121 21121 25.399 0.72543 1 1461600 + 23035 17354 15198 15203 22838 22838 0.04161162680134112 KIIDIQEKV 9 Unmodified _KIIDIQEKV_ 0 0 0 TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;ENSG00000047410|ENST00000367478|TPR TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7787475585938 2 543.331882 1084.64921 0.50882 0.00027646 -0.42976 -0.0002335 0.079056 4.2953E-05 543.33158200713 75.495 0.7155 75.495 75.138 75.853 0 65 20 4 0 0 0 2.171E-06 1 14631 14631 162.31 51.522 1 15843000 23036 1215 15199 15204 22839 22839 0.11027158199931364 KIIDIQEKV 9 Unmodified _KIIDIQEKV_ 0 0 0 TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;ENSG00000047410|ENST00000367478|TPR TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7824096679688 2 543.331882 1084.64921 0.24171 0.00013133 -0.10333 -5.6141E-05 0.13839 7.5189E-05 543.3317607836224 78.629 0.74842 75.165 74.782 75.53 -3.4633 68 20 4 0 0 0 0.069381 1 15356 15356 105.38 51.316 1 34537000 23037 1215 15199 15204 22840 22840 0.11027158199931364 KIIDIQEKV 9 Unmodified _KIIDIQEKV_ 0 0 0 TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;ENSG00000047410|ENST00000367478|TPR TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7928466796875 2 543.331882 1084.64921 -0.024225 -1.3162E-05 0.15822 8.5966E-05 0.134 7.2804E-05 543.3319073926453 79.051 0.73595 75.246 74.876 75.612 -3.8048 62 20 4 0 0 0 0.037046 1 14949 14949 77.049 12.122 1 29713000 23038 1215 15199 15204 22841 22841 0.11027158199931364 KIIDIQEKV 9 Unmodified _KIIDIQEKV_ 0 0 0 TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;ENSG00000047410|ENST00000367478|TPR TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7757568359375 2 543.331882 1084.64921 0.045026 2.4464E-05 0.034173 1.8567E-05 0.079199 4.3031E-05 543.3318450891003 78.915 0.73328 75.239 74.887 75.62 -3.676 66 20 4 0 0 0 2.0712000000000002E-45 1 15019 15019 214.05 78.186 1 29856000 23039 1215 15199 15204 22842 22842 0.11027158199931364 KIIERLDHL 9 Unmodified _KIIERLDHL_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18;nc|ENSG00000110328|Q6P9A2-2|GALNT18;ENST00000526064.1_1_11:11497961-11643245:-|nuORF ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 379.1583251953125 3 379.564391 1135.67134 -0.32189 -0.00012218 0.086833 3.2959E-05 -0.23506 -8.922E-05 379.56439013196314 71.656 0.52843 68.117 67.869 68.398 -3.5385 21 14 2 0 0 0 0.27464 1 13587 13587 29.082 20.926 1 1117700 23040 2571 15200 15205 22843 22843 0.10893382668359664 KIIQANGY 8 Unmodified _KIIQANGY_ 0 0 0 nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;ENST00000506744.1_1_5:65372690-65374355:+|nuORF nc|ENSG00000112851|Q96RT1-7|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7569580078125 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 63.636 1 63.636 63.136 64.136 0 0 0 0 0.2074 1 12239 12239 19.439 0 1 23041 2714 15201 15206 22844 22844 0.040538022430382625 KIISIIVKND 10 Unmodified _KIISIIVKND_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP TRRAP-ASNS|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 571.8446655273438 2 571.860806 1141.70706 NaN NaN NaN NaN NaN NaN NaN 9.3035 1 8.2688 7.7688 8.7688 -1.0347 0 0 0 0.22588 1 938 938 0.35063 0.35063 1 23042 26528;7260 15202 15207 22845 22845 0.14187420125381323 KIKAIKKTK 9 Unmodified _KIKAIKKTK_ 0 0 0 REV__tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1 REV__tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 353.25262451171875 3 353.253376 1056.7383 NaN NaN NaN NaN NaN NaN NaN 12.524 1 11.395 10.895 11.895 -1.1293 0 0 0 0.23508 1 1540 1540 0 0 1 + 23043 24862 15203 15208 22846 22846 0.21220037950092774 KIKDPDAS 8 Unmodified _KIKDPDAS_ 0 0 0 CALR|p.P264Qfs*2|1|0.3|ENSG00000179218|chr19:12940625-12940625|C/-|frameshift_variant;ENSG00000179218|ENST00000316448|CALR CALR|p.P264Qfs*2|1|0.3|ENSG00000179218|chr19:12940625-12940625|C/-|frameshift_variant CALR|p.P264Qfs*2|1|0.3|ENSG00000179218|chr19:12940625-12940625|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2150573730469 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 22.759 1 21.206 20.706 21.706 -1.5532 0 0 0 0.21486 1 3903 3903 12.532 0.89125 1 23044 370 15204 15209 22847 22847 0.019015056264606756 KIKGKRVALVD 11 Unmodified _KIKGKRVALVD_ 0 0 0 tr|U7SZE1|U7SZE1_FUSNUAdeninephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00717PE=4SV=1 tr|U7SZE1|U7SZE1_FUSNUAdeninephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00717PE=4SV=1 tr|U7SZE1|U7SZE1_FUSNUAdeninephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00717PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 613.9629516601562 2 613.900797 1225.78704 NaN NaN NaN NaN NaN NaN NaN 165.71 1 160.92 160.42 161.42 -4.7898 0 0 0 0.23379 1 33211 33211 5.2969 2.0156 1 23045 26292 15205 15210 22848 22848 0.18317906519200733 KIKKNLIIAY 10 Unmodified _KIKKNLIIAY_ 0 0 0 tr|U7SL12|U7SL12_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02030PE=4SV=1 tr|U7SL12|U7SL12_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02030PE=4SV=1 tr|U7SL12|U7SL12_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02030PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2798461914062 2 602.394816 1202.77508 NaN NaN NaN NaN NaN NaN NaN 143.28 1 143.28 142.78 143.78 0 0 0 0 2.8426 1 28586 28586 0.26539 0.23398 1 23046 25974 15206 15211 22849 22849 0.18180289776046266 KIKKNLIIAY 10 Unmodified _KIKKNLIIAY_ 0 0 0 tr|U7SL12|U7SL12_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02030PE=4SV=1 tr|U7SL12|U7SL12_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02030PE=4SV=1 tr|U7SL12|U7SL12_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02030PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2870483398438 2 602.394816 1202.77508 NaN NaN NaN NaN NaN NaN NaN 141.22 1 136.24 135.74 136.74 -4.9877 0 0 0 2.8426 1 27192 27192 0.043787 0.042406 1 23047 25974 15206 15211 22850 22850 0.18180289776046266 KIKKQKQRP 9 Unmodified _KIKKQKQRP_ 0 0 0 KAT6B|p.S371Hfs*86|1|0.14|ENSG00000156650|chr10:74975443-74975443|G/-|frameshift_variant;KAT6B|p.K962Sfs*2|1|0.13|ENSG00000156650|chr10:75021146-75021146|A/-|frameshift_variant;KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant;KAT6B|p.L1460*|1|0.36|ENSG00000156650|chr10:75029198-75029198|T/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B KAT6B|p.S371Hfs*86|1|0.14|ENSG00000156650|chr10:74975443-74975443|G/-|frameshift_variant KAT6B|p.S371Hfs*86|1|0.14|ENSG00000156650|chr10:74975443-74975443|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 577.3790283203125 2 577.380032 1152.74551 NaN NaN NaN NaN NaN NaN NaN 168.38 1 163.59 163.09 164.09 -4.7898 0 0 0 0.23508 1 34031 34031 1.8442 0.19162 1 23048 5096 15207 15212 22851 22851 0.1752477055053987 KIKKRKET 8 Unmodified _KIKKRKET_ 0 0 0 REV__nc|ENSG00000151779|A2RRP1-2|NBAS REV__nc|ENSG00000151779|A2RRP1-2|NBAS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.22747802734375 3 344.229231 1029.66586 NaN NaN NaN NaN NaN NaN NaN 92.843 1 88.699 88.199 89.199 -4.1435 0 0 0 0.21486 1 17692 17692 0.40072 0 1 + 23049 17084 15208 15213 22852 22852 0.1522170387654569 KIKLLLKMIKR 11 Unmodified _KIKLLLKMIKR_ 0 0 0 REV__ENSG00000115524|ENST00000335508|SF3B1 REV__ENSG00000115524|ENST00000335508|SF3B1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 692.6043090820312 2 692.483443 1382.95233 NaN NaN NaN NaN NaN NaN NaN 166.74 1 161.79 161.29 162.29 -4.9484 0 0 0 0.23698 1 32705 32705 0 0 1 + 23050 15435 15209 15214 22853 22853 0.2761742205448172 KIKLVVIVPIV 11 Unmodified _KIKLVVIVPIV_ 0 0 0 REV__NUFIP1|p.C176Vfs*27|1|0.41|ENSG00000083635|chr13:44980790-44980790|A/-|frameshift_variant REV__NUFIP1|p.C176Vfs*27|1|0.41|ENSG00000083635|chr13:44980790-44980790|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 610.9505615234375 2 610.93886 1219.86317 NaN NaN NaN NaN NaN NaN NaN 172.66 1 172.66 172.16 173.16 0 0 0 0 0.22632 1 35657 35657 0.00056442 0.00056442 1 + 23051 24388 15210 15215 22854 22854 0.26202910366623655 KILDKQKVV 9 Unmodified _KILDKQKVV_ 0 0 0 nc|ENSG00000142875|P22694-8|PRKACB;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB;ENSG00000142875|ENST00000370685|PRKACB nc|ENSG00000142875|P22694-8|PRKACB nc|ENSG00000142875|P22694-8|PRKACB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5596008300781 3 357.569253 1069.68593 -0.15283 -5.4647E-05 -0.24888 -8.8991E-05 -0.40171 -0.00014364 357.56914876440027 30.628 0.45303 28.554 28.291 28.744 -2.0743 16 12 2 0 0 0 0.15889 1 5260 5260 22.736 5.6234 1 502320 23052 1454 15211 15216 22855 22855 0.15387454816504942 KILDKQKVV 9 Unmodified _KILDKQKVV_ 0 0 0 nc|ENSG00000142875|P22694-8|PRKACB;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB;ENSG00000142875|ENST00000370685|PRKACB nc|ENSG00000142875|P22694-8|PRKACB nc|ENSG00000142875|P22694-8|PRKACB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.569253 1069.68593 0.17271 6.1756E-05 -0.32323 -0.00011558 -0.15052 -5.3822E-05 357.5691234532502 30.583 0.35437 28.467 28.329 28.683 -2.1167 -0.070073 1.6611E-05 NaN 22.736 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 726780 23053 1454 15211 15216 0.15387454816504942 KILDYEVTL 9 Unmodified _KILDYEVTL_ 0 0 0 ENST00000503773.6_1_5:55236912-55256289:-|nuORF;nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST;ENST00000506241.1_1_5:55251841-55256299:-|nuORF;IL6ST|p.V530*|4|0.3|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant;IL6ST|p.P703Qfs*19|1|0.08|ENSG00000134352|chr5:55941731-55941732|-/ATCT|frameshift_variant;IL6ST|p.S731Lfs*57|1|0.13|ENSG00000134352|chr5:55941649-55941649|C/-|frameshift_variant ENST00000503773.6_1_5:55236912-55256289:-|nuORF ENST00000503773.6_1_5:55236912-55256289:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7863159179688 2 547.310615 1092.60668 0.33112 0.00018123 -1.2682 -0.0006941 -0.93708 -0.00051287 547.31016206304 139.78 0.65559 139.78 139.47 140.12 0 30 18 3 0 0 0 0.037957 1 27775 27775 74.216 67.181 1 7472600 23054 3847 15212 15217 22856 22856 0.0640776307170654 KILDYEVTL 9 Unmodified _KILDYEVTL_ 0 0 0 ENST00000503773.6_1_5:55236912-55256289:-|nuORF;nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST;ENST00000506241.1_1_5:55251841-55256299:-|nuORF;IL6ST|p.V530*|4|0.3|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant;IL6ST|p.P703Qfs*19|1|0.08|ENSG00000134352|chr5:55941731-55941732|-/ATCT|frameshift_variant;IL6ST|p.S731Lfs*57|1|0.13|ENSG00000134352|chr5:55941649-55941649|C/-|frameshift_variant ENST00000503773.6_1_5:55236912-55256289:-|nuORF ENST00000503773.6_1_5:55236912-55256289:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.773193359375 2 547.310615 1092.60668 0.25998 0.00014229 -0.018756 -1.0265E-05 0.24123 0.00013203 547.3103732575374 144.26 0.48846 139.59 139.4 139.89 -4.6694 30 13 3 0 0 0 0.019708 3 28572 28539;28569;28572 92.653 44.567 1 7695200 23055 3847 15212 15217 22857;22858;22859 22859 0.0640776307170654 KILDYEVTL 9 Unmodified _KILDYEVTL_ 0 0 0 ENST00000503773.6_1_5:55236912-55256289:-|nuORF;nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST;ENST00000506241.1_1_5:55251841-55256299:-|nuORF;IL6ST|p.V530*|4|0.3|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant;IL6ST|p.P703Qfs*19|1|0.08|ENSG00000134352|chr5:55941731-55941732|-/ATCT|frameshift_variant;IL6ST|p.S731Lfs*57|1|0.13|ENSG00000134352|chr5:55941649-55941649|C/-|frameshift_variant ENST00000503773.6_1_5:55236912-55256289:-|nuORF ENST00000503773.6_1_5:55236912-55256289:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7700805664062 2 547.310615 1092.60668 0.12826 7.02E-05 0.53287 0.00029165 0.66114 0.00036185 547.3107762751087 144.79 0.54996 139.72 139.46 140.01 -5.0671 29 15 2 0 0 0 0.045725 2 27960 27947;27960 72.968 41.399 1 5171600 23056 3847 15212 15217 22860;22861 22861 0.0640776307170654 KILDYEVTL 9 Unmodified _KILDYEVTL_ 0 0 0 ENST00000503773.6_1_5:55236912-55256289:-|nuORF;nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST;ENST00000506241.1_1_5:55251841-55256299:-|nuORF;IL6ST|p.V530*|4|0.3|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant;IL6ST|p.P703Qfs*19|1|0.08|ENSG00000134352|chr5:55941731-55941732|-/ATCT|frameshift_variant;IL6ST|p.S731Lfs*57|1|0.13|ENSG00000134352|chr5:55941649-55941649|C/-|frameshift_variant ENST00000503773.6_1_5:55236912-55256289:-|nuORF ENST00000503773.6_1_5:55236912-55256289:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7864990234375 2 547.310615 1092.60668 0.37867 0.00020725 -1.0761 -0.00058899 -0.69748 -0.00038174 547.3102166601384 144.6 0.72484 139.66 139.31 140.03 -4.9445 48 20 5 0 0 0 0.012534 5 27947 27886;27896;27946;27947;28017 99.755 45.484 1 7130900 23057 3847 15212 15217 22862;22863;22864;22865;22866 22865 0.0640776307170654 KILEEAHEL 9 Unmodified _KILEEAHEL_ 0 0 0 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2833862304688 2 541.298039 1080.58152 0.0093954 5.0857E-06 -0.53641 -0.00029036 -0.52702 -0.00028527 541.7990709544139 58.459 0.37096 58.459 58.246 58.617 0 12 10 2 0 0 0 0.7906 1 11154 11154 18.146 2.2992 1 1127100 23058 2892 15213 15218 22867 22867 0.04445708269122406 KILEEAHEL 9 Unmodified _KILEEAHEL_ 0 0 0 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.284423828125 2 541.298039 1080.58152 NaN NaN NaN NaN NaN NaN NaN 61.168 1 58.235 57.735 58.735 -2.9333 0 0 0 0.10991 1 11784 11784 36.506 14.76 1 23059 2892 15213 15218 22868 22868 0.04445708269122406 KILEKEIRV 9 Unmodified _KILEKEIRV_ 0 0 0 HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant;HMMR|p.K666Nfs*11|1|0.36|ENSG00000072571|chr5:163490420-163490420|A/-|frameshift_variant;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR;HMMR|p.T127Nfs*7|1|0.32|ENSG00000072571|chr5:163469743-163469744|-/A|frameshift_variant;HMMR|p.K232Nfs*21|1|0.07|ENSG00000072571|chr5:163473223-163473223|A/-|frameshift_variant HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.1590576171875 3 376.576408 1126.70739 -0.16027 -6.0352E-05 -0.048042 -1.8091E-05 -0.20831 -7.8444E-05 376.57634832590884 53.522 0.81448 53.522 53.11 53.924 0 52 22 3 0 0 0 0.10782 1 10228 10228 67.838 48.212 1 10755000 23060 1469 15214 15219 22869 22869 0.14910839845219925 KILIQVVPVLV 11 Unmodified _KILIQVVPVLV_ 0 0 0 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 610.9359130859375 2 610.920667 1219.82678 NaN NaN NaN NaN NaN NaN NaN 162.9 1 157.76 157.26 158.26 -5.1438 0 0 0 0.22632 1 31670 31670 1.4551 0.61018 1 + 23061 19157 15215 15220 22870 22870 0.22566033469911417 KILKELQKV 9 Unmodified _KILKELQKV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.1788635253906 3 366.91302 1097.71723 -0.28607 -0.00010496 0.27329 0.00010027 -0.012777 -4.6879E-06 366.91308931254054 46.639 0.48062 43.798 43.593 44.074 -2.8409 34 13 3 0 0 0 0.058839 1 8816 8816 67.187 43.397 1 3195800 23062 3680 15216 15221 22871 22871 0.17228027850592298 KILKELQKV 9 Unmodified _KILKELQKV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 366.91302 1097.71723 0.055068 2.0205E-05 0.23599 8.6588E-05 0.29106 0.00010679 366.9130362340986 43.807 0.58988 43.807 43.467 44.057 0 -0.020567 -0.00014363 NaN 67.187 41 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2625900 23063 3680 15216 15221 0.17228027850592298 KILKELQKV 9 Unmodified _KILKELQKV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 366.91302 1097.71723 -0.0014529 -5.3309E-07 0.071417 2.6204E-05 0.069964 2.5671E-05 366.91299827994436 46.787 0.55539 43.845 43.545 44.1 -2.9421 0.017753 -0.00032479 NaN 67.187 39 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2742800 23064 3680 15216 15221 0.17228027850592298 KILKELQKV 9 Unmodified _KILKELQKV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 366.91302 1097.71723 -0.7823 -0.00028704 0.87785 0.00032209 0.095549 3.5058E-05 366.9132955097672 46.726 0.66044 43.859 43.577 44.237 -2.8666 0.031828 0.00056289 NaN 67.187 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3303600 23065 3680 15216 15221 0.17228027850592298 KILLKLIQP 9 Unmodified _KILLKLIQP_ 0 0 0 REV__ENST00000574224.1_1_16:16108407-16150188:+|nuORF REV__ENST00000574224.1_1_16:16108407-16150188:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2825927734375 2 533.373352 1064.73215 NaN NaN NaN NaN NaN NaN NaN 85.383 1 81.719 81.219 82.219 -3.6641 0 0 0 0.23508 1 16692 16692 3.9444 0.3479 1 + 23066 14868 15217 15222 22872 22872 0.20237519718602925 KILLTKVRRF 10 Unmodified _KILLTKVRRF_ 0 0 0 REV__ENSG00000181240|ENST00000321510|SLC25A41 REV__ENSG00000181240|ENST00000321510|SLC25A41 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2508544921875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 159.28 1 154.01 153.51 154.51 -5.2748 0 0 0 2.8426 1 30912 30912 0.13989 0.13933 1 + 23067 18724 15218 15223 22873 22873 0.21390489652821998 KILPVLLLLLL 11 Unmodified _KILPVLLLLLL_ 0 0 0 REV__ENSG00000106809|ENST00000375561|OGN REV__ENSG00000106809|ENST00000375561|OGN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 624.4262084960938 2 624.456885 1246.89922 NaN NaN NaN NaN NaN NaN NaN 174.75 1 169.96 169.46 170.46 -4.7898 0 0 0 0.23698 1 35710 35710 0 0 1 + 23068 15065 15219 15224 22874 22874 0.28564367543526714 KILQLLLLIL 10 Unmodified _KILQLLLLIL_ 0 0 0 ENST00000462957.1_1_6:170858142-170858184:-|nuORF ENST00000462957.1_1_6:170858142-170858184:-|nuORF ENST00000462957.1_1_6:170858142-170858184:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2658081054688 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 177.14 1 172.27 171.77 172.77 -4.8739 0 0 0 0.22588 1 35249 35249 0.45834 0 1 23069 10094 15220 15225 22875 22875 0.2543522147532258 KILQNDKRY 9 Unmodified _KILQNDKRY_ 0 0 0 nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;TCERG1|p.E1065D|1|0.22|ENSG00000113649|chr5:146510540-146510540|G/T|missense_variant;ENST00000549332.1_1_5:145889637-145890202:+|nuORF nc|ENSG00000113649|O14776-2|TCERG1 nc|ENSG00000113649|O14776-2|TCERG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 589.33837890625 2 589.33803 1176.66151 NaN NaN NaN NaN NaN NaN NaN 168.15 1 168.15 167.65 168.65 0 0 0 0 0.23508 1 34412 34412 7.2892 1.0834 1 23070 2757 15221 15226 22876 22876 0.08024194662993978 KILRLPCL 8 Unmodified _KILRLPCL_ 0 0 0 ZKSCAN4|p.N458Mfs*81|1|0.3|ENSG00000187626|chr6:28245381-28245381|T/-|frameshift_variant ZKSCAN4|p.N458Mfs*81|1|0.3|ENSG00000187626|chr6:28245381-28245381|T/-|frameshift_variant ZKSCAN4|p.N458Mfs*81|1|0.3|ENSG00000187626|chr6:28245381-28245381|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7293701171875 2 478.309698 954.604843 NaN NaN NaN NaN NaN NaN NaN 124.89 1 120.24 119.74 120.74 -4.6495 0 0 0 0.23711 1 24029 24029 0.62683 0 1 23071 26602 15222 15227 22877 22877 0.12572475572767416 KILTSKFLRR 10 Unmodified _KILTSKFLRR_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.9862060546875 4 316.208033 1260.80303 -0.61806 -0.00019544 0.13538 4.2809E-05 -0.48268 -0.00015263 316.20816392016917 12.617 0.10124 12.617 12.548 12.649 0 4 2 2 0 0 0 0.91149 1 1764 1764 0.12286 0.049601 1 453060 23072 4979 15223 15228 22878 22878 0.18305612756103073 KILVACYP 8 Unmodified _KILVACYP_ 0 0 0 REV__PRKCQ|p.V33I|1|0.29|ENSG00000065675|chr10:6515039-6515039|C/T|missense_variant REV__PRKCQ|p.V33I|1|0.29|ENSG00000065675|chr10:6515039-6515039|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7586669921875 2 453.759507 905.50446 NaN NaN NaN NaN NaN NaN NaN 149.2 1 149.2 148.7 149.7 0 0 0 0 0.23749 1 29869 29869 0.25148 0.2432 1 + 23073 24508 15224 15229 22879 22879 0.04792818519104003 KILVIPSKVW 10 Unmodified _KILVIPSKVW_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 591.933837890625 2 591.884084 1181.75362 NaN NaN NaN NaN NaN NaN NaN 166.79 1 161.84 161.34 162.34 -4.948 0 0 0 2.8426 1 32740 32740 3.8763 0 1 23074 6327 15225 15230 22880 22880 0.17000904747328605 KIMFGFRVWRE 11 Unmodified _KIMFGFRVWRE_ 0 0 0 EXTL3|p.E753K|2|0.16|ENSG00000012232|chr8:28731331-28731331|G/A|missense_variant EXTL3|p.E753K|2|0.16|ENSG00000012232|chr8:28731331-28731331|G/A|missense_variant EXTL3|p.E753K|2|0.16|ENSG00000012232|chr8:28731331-28731331|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2674865722656 3 490.26758 1467.78091 NaN NaN NaN NaN NaN NaN NaN 19.857 1 19.857 19.357 20.357 0 0 0 0 0.22632 1 3264 3264 0.58532 0.079364 1 23075 11790 15226 15231 22881 22881 0.06573065016027613 KIMTEKELLAV 11 Unmodified _KIMTEKELLAV_ 0 0 0 ENSG00000132589|ENST00000394908|FLOT2;ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENST00000582174.5_1_17:27210105-27216001:-|nuORF;ENST00000581509.1_1_17:27210105-27216012:-|nuORF ENSG00000132589|ENST00000394908|FLOT2 ENSG00000132589|ENST00000394908|FLOT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2531433105469 3 425.584463 1273.73156 0.32735 0.00013932 -0.32866 -0.00013987 -0.0013086 -5.5694E-07 425.58437314140855 106.46 0.28131 106.46 106.29 106.57 0 13 7 2 0 0 0 0.96158 1 20916 20916 5.1984 4.5008 1 1384000 23076 3744 15227 15232 22882 22882 0.10564312216592953 KINEAIVAV 9 Unmodified _KINEAIVAV_ 0 0 0 ENSG00000087302|ENST00000261700|RTRAF ENSG00000087302|ENST00000261700|RTRAF ENSG00000087302|ENST00000261700|RTRAF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7398376464844 2 478.792392 955.570232 -0.16822 -8.0544E-05 0.18132 8.6817E-05 0.013102 6.2732E-06 478.792478865593 88.357 0.90404 88.357 87.919 88.823 0 90 25 5 0 0 0 0.0016877 1 17223 17223 111.29 47.051 1 53488000 23077 1716 15228 15233 22883 22883 0.09066930965650499 KINEAIVAV 9 Unmodified _KINEAIVAV_ 0 0 0 ENSG00000087302|ENST00000261700|RTRAF ENSG00000087302|ENST00000261700|RTRAF ENSG00000087302|ENST00000261700|RTRAF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7251892089844 2 478.792392 955.570232 0.28422 0.00013608 -0.22132 -0.00010597 0.062893 3.0113E-05 478.79226823282 92.008 0.97112 87.914 87.495 88.467 -4.0946 90 27 4 0 0 0 0.00014526 1 17510 17510 123.45 48.522 1 82418000 23078 1716 15228 15233 22884 22884 0.09066930965650499 KINEAIVAV 9 Unmodified _KINEAIVAV_ 0 0 0 ENSG00000087302|ENST00000261700|RTRAF ENSG00000087302|ENST00000261700|RTRAF ENSG00000087302|ENST00000261700|RTRAF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7417297363281 2 478.792392 955.570232 0.10609 5.0793E-05 -0.099884 -4.7824E-05 0.0062023 2.9696E-06 478.7923035548455 91.806 1.3702 87.998 87.548 88.918 -3.8083 120 39 5 0 0 0 1.7516E-05 1 17562 17562 136.33 51.061 1 73589000 23079 1716 15228 15233 22885 22885 0.09066930965650499 KINEAIVAV 9 Unmodified _KINEAIVAV_ 0 0 0 ENSG00000087302|ENST00000261700|RTRAF ENSG00000087302|ENST00000261700|RTRAF ENSG00000087302|ENST00000261700|RTRAF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.792392 955.570232 -0.021965 -1.0517E-05 -0.011506 -5.509E-06 -0.033471 -1.6026E-05 478.7923596955135 91.816 0.96789 87.891 87.406 88.374 -3.9251 -0.043113 9.8022E-05 NaN 136.33 103 27 5 NaN NaN NaN NaN 0 NaN NaN 0 91893000 23080 1716 15228 15233 0.09066930965650499 KINGDKLARL 10 Unmodified _KINGDKLARL_ 0 0 0 REV__KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant REV__KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.15863037109375 3 376.568024 1126.68224 -0.35222 -0.00013264 0.16382 6.169E-05 -0.1884 -7.0947E-05 376.56807597454844 72.564 0.3598 69.254 69.095 69.455 -3.3107 16 9 2 0 0 0 0.91149 1 14156 14156 0.69767 0 1 682090 + 23081 18897 15229 15234 22886 22886 0.12396785042665215 KINGKLFDKVF 11 Unmodified _KINGKLFDKVF_ 0 0 0 REV__HMOX2|p.Q165Pfs*26|1|0.31|ENSG00000103415|chr16:4507993-4507994|-/G|frameshift_variant REV__HMOX2|p.Q165Pfs*26|1|0.31|ENSG00000103415|chr16:4507993-4507994|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 654.8713989257812 2 654.887355 1307.76016 NaN NaN NaN NaN NaN NaN NaN 173.02 1 173.02 172.52 173.52 0 0 0 0 0.22632 1 35753 35753 0.172 0 1 + 23082 14879 15230 15235 22887 22887 0.11858797908030283 KINKIDRPPA 10 Unmodified _KINKIDRPPA_ 0 0 0 L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|29|2|sense L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|29|2|sense L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|29|2|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3350830078125 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 160.94 1 155.69 155.19 156.19 -5.2526 0 0 0 0.22588 1 31231 31231 5.2969 0.39987 1 23083 12050 15231 15236 22888 22888 0.11292785042633113 KIQIGNSF 8 Unmodified _KIQIGNSF_ 0 0 0 ENST00000495736.1_1_7:129986419-130007427:+|nuORF;nc|ENSG00000158525|Q8WXQ8-2|CPA5;CPA5|p.W384Lfs*4|1|0.1|ENSG00000158525|chr7:130368434-130368435|-/C|frameshift_variant;nc|ENSG00000158525|Q8WXQ8-3|CPA5;ENSG00000158525|ENST00000474905|CPA5 ENST00000495736.1_1_7:129986419-130007427:+|nuORF ENST00000495736.1_1_7:129986419-130007427:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75567626953125 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 91.266 1 91.266 90.766 91.766 0 0 0 0 0.21486 1 17832 17832 8.5933 0.68312 1 23084 712 15232 15237 22889 22889 0.040538022430382625 KIQTKIFCK 9 Unmodified _KIQTKIFCK_ 0 0 0 REV__nc|ENSG00000000005|Q9H2S6-2|TNMD REV__nc|ENSG00000000005|Q9H2S6-2|TNMD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 370.14117431640625 3 370.223088 1107.64744 NaN NaN NaN NaN NaN NaN NaN 43.27 1 43.27 42.77 43.77 0 0 0 0 0.19654 1 8105 8105 0.12781 0 1 + 23085 13817 15233 15238 22890 22890 0.0979182591031531 KIRKILLKNLL 11 Unmodified _KIRKILLKNLL_ 0 0 0 REV__tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1 REV__tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 676.476806640625 2 676.479215 1350.94388 NaN NaN NaN NaN NaN NaN NaN 169.23 1 164.3 163.8 164.8 -4.9295 0 0 0 0.23698 1 33401 33401 0.30703 0 1 + 23086 24992 15234 15239 22891 22891 0.2824419140954433 KIRKLKRSIC 10 Unmodified _KIRKLKRSIC_ 0 0 0 REV__ENSG00000157214|ENST00000394621|STEAP2 REV__ENSG00000157214|ENST00000394621|STEAP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7544555664062 2 622.902817 1243.79108 NaN NaN NaN NaN NaN NaN NaN 172.76 1 167.88 167.38 168.38 -4.881 0 0 0 0.22588 1 34313 34313 3.2813 0.28607 1 + 23087 17288 15235 15240 22892 22892 0.1789367274129745 KIRMRLQQKQP 11 Unmodified _KIRMRLQQKQP_ 0 0 0 REV__nc|ENSG00000166747|O43747-2|AP1G1 REV__nc|ENSG00000166747|O43747-2|AP1G1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 713.5016479492188 2 713.427187 1424.83982 NaN NaN NaN NaN NaN NaN NaN 166.15 1 161.36 160.86 161.86 -4.7898 0 0 0 0.2367 1 33343 33343 2.9952 0 1 + 23088 17868 15236 15241 22893 22893 0.1443954131038936 KIRPLIYY 8 Unmodified _KIRPLIYY_ 0 0 0 REV__ENST00000460437.1_1_3:195243555-195243666:-|nuORF REV__ENST00000460437.1_1_3:195243555-195243666:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2867431640625 2 533.326402 1064.63825 0.34831 0.00018576 0.086288 4.602E-05 0.4346 0.00023178 533.3265065479491 64.649 0.48405 61.365 61.139 61.623 -3.2832 23 13 2 0 0 0 0.83271 1 12101 12101 2.8892 0.58649 1 1342800 + 23089 21878 15237 15242 22894 22894 0.10851800616319451 KIRQYIEYYFF 11 Unmodified _KIRQYIEYYFF_ 0 0 0 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4094848632812 2 785.408652 1568.80275 NaN NaN NaN NaN NaN NaN NaN 106.71 1 102.61 102.11 103.11 -4.0913 0 0 0 0.23698 1 20518 20518 0.30703 0 1 23090 26075 15238 15243 22895 22895 0.04110148245581513 KISETLNT 8 Unmodified _KISETLNT_ 0 0 0 REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7 REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7630615234375 2 453.250557 904.486562 0.032182 1.4587E-05 -0.28754 -0.00013033 -0.25536 -0.00011574 453.25036723649913 59.012 0.63927 55.76 55.488 56.127 -3.2517 43 17 3 0 0 0 8448 1 11032 11032 9.544 0 1 3656500 + 23091 16480 15239 15244 22896 22896 0.030497747979552514 KISGLSQYNTS 11 Unmodified _KISGLSQYNTS_ 0 0 0 REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 399.8460998535156 3 399.875182 1196.60372 NaN NaN NaN NaN NaN NaN NaN 9.0167 1 7.9523 7.4523 8.4523 -1.0645 0 0 0 0.22632 1 937 937 0 0 1 + 23092 22984 15240 15245 22897 22897 0.013278879468998639 KITAETIVGL 10 Unmodified _KITAETIVGL_ 0 0 0 REV__ENSG00000018510|ENST00000264167|AGPS REV__ENSG00000018510|ENST00000264167|AGPS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.259033203125 2 522.818607 1043.62266 -0.70141 -0.00036671 0.31861 0.00016657 -0.3828 -0.00020014 522.818749639489 108.76 0.66209 104.39 103.98 104.64 -4.3776 27 18 2 0 0 0 0.83242 1 21412 21412 10.074 2.465 1 1910600 + 23093 13972 15241 15246 22898 22898 0.10259469308630287 KITAETIVGL 10 Unmodified _KITAETIVGL_ 0 0 0 REV__ENSG00000018510|ENST00000264167|AGPS REV__ENSG00000018510|ENST00000264167|AGPS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2691040039062 2 522.818607 1043.62266 0.72333 0.00037817 -0.89938 -0.00047021 -0.17605 -9.204E-05 522.8181940787596 108.67 0.6909 104.49 104.11 104.8 -4.1826 30 19 3 0 0 0 0.83242 1 20884 20884 10.074 1.3285 1 1251100 + 23094 13972 15241 15246 22899 22899 0.10259469308630287 KITEYLERV 9 Unmodified _KITEYLERV_ 0 0 0 ENSG00000131375|ENST00000253693|CAPN7;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant ENSG00000131375|ENST00000253693|CAPN7 ENSG00000131375|ENST00000253693|CAPN7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3286743164062 2 575.826963 1149.63937 0.17179 9.892E-05 -0.05575 -3.2102E-05 0.11604 6.6818E-05 575.8269704368843 89.068 0.563 89.068 88.718 89.281 0 30 15 3 0 0 0 0.023874 1 17390 17390 88.364 20.526 1 4756300 23095 3671 15242 15247 22900 22900 0.07053970194556314 KITEYLERV 9 Unmodified _KITEYLERV_ 0 0 0 ENSG00000131375|ENST00000253693|CAPN7;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant ENSG00000131375|ENST00000253693|CAPN7 ENSG00000131375|ENST00000253693|CAPN7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3284912109375 2 575.826963 1149.63937 -0.017458 -1.0053E-05 -0.065245 -3.757E-05 -0.082703 -4.7623E-05 575.8268764788154 92.609 0.62567 88.684 88.338 88.964 -3.9251 41 17 3 0 0 0 0.023874 2 18147 18097;18147 88.364 10.303 1 4541400 23096 3671 15242 15247 22901;22902 22902 0.07053970194556314 KITEYLERV 9 Unmodified _KITEYLERV_ 0 0 0 ENSG00000131375|ENST00000253693|CAPN7;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant ENSG00000131375|ENST00000253693|CAPN7 ENSG00000131375|ENST00000253693|CAPN7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3282470703125 2 575.826963 1149.63937 0.3503 0.00020171 -0.55394 -0.00031898 -0.20364 -0.00011726 575.8266071559693 92.716 0.73337 88.573 88.281 89.015 -4.1435 34 20 2 0 0 0 0.10162 1 17699 17699 55.235 11.253 1 5231400 23097 3671 15242 15247 22903 22903 0.07053970194556314 KITEYLERV 9 Unmodified _KITEYLERV_ 0 0 0 ENSG00000131375|ENST00000253693|CAPN7;CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant ENSG00000131375|ENST00000253693|CAPN7 ENSG00000131375|ENST00000253693|CAPN7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3278198242188 2 575.826963 1149.63937 0.098833 5.6911E-05 -0.46052 -0.00026518 -0.36169 -0.00020827 575.8266812798795 92.586 0.71301 88.777 88.377 89.09 -3.8083 43 20 3 0 0 0 0.076312 3 17757 17690;17708;17757 62.869 14.955 1 3967800 23098 3671 15242 15247 22904;22905;22906 22906 0.07053970194556314 KITLNRHDWDW 11 Unmodified _KITLNRHDWDW_ 0 0 0 REV__ENSG00000140443|ENST00000650285|IGF1R REV__ENSG00000140443|ENST00000650285|IGF1R MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.376708984375 2 742.375675 1482.7368 NaN NaN NaN NaN NaN NaN NaN 106.99 1 102.58 102.08 103.08 -4.4121 0 0 0 0.22632 1 20525 20525 0.094841 0 1 + 23099 16574 15243 15248 22907 22907 0.014737521234110318 KITVNPDS 8 Unmodified _KITVNPDS_ 0 0 0 BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant;BRCA2|p.N1642Mfs*2|1|0.08|ENSG00000139618|chr13:32339277-32339277|A/-|frameshift_variant;BRCA2|p.K1691Nfs*15|1|0.11|ENSG00000139618|chr13:32339422-32339422|A/-|frameshift_variant;BRCA2|p.N1784Tfs*7|1|0.4|ENSG00000139618|chr13:32339700-32339700|A/-|frameshift_variant;BRCA2|p.T2515Nfs*24|1|0.35|ENSG00000139618|chr13:32356530-32356531|-/A|frameshift_variant;BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant;BRCA2|p.N986Kfs*2|1|0.32|ENSG00000139618|chr13:32337305-32337306|-/A|frameshift_variant BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2212219238281 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 70.743 1 67.493 66.993 67.993 -3.2492 0 0 0 0.23664 1 13771 13771 3.2813 0 1 23100 328 15244 15249 22908 22908 0.019015056264720442 KIVDKIKPE 9 Unmodified _KIVDKIKPE_ 0 0 0 REV__tr|U7T117|U7T117_FUSNUSite-specificDNA-methyltransferase(Adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00771PE=4SV=1 REV__tr|U7T117|U7T117_FUSNUSite-specificDNA-methyltransferase(Adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00771PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5594787597656 3 357.225375 1068.6543 0.74837 0.00026734 -1.0681 -0.00038155 -0.31974 -0.00011422 357.2249400546642 24.665 0.37549 23.016 22.755 23.131 -1.6482 16 10 2 0 0 0 0.64253 1 4325 4325 2.4985 2.3707 1 395680 + 23101 25287 15245 15250 22909 22909 0.12271462062540195 KIWFHKFKYGD 11 Unmodified _KIWFHKFKYGD_ 0 0 0 nc|ENSG00000229715|Q658K8|EEF1DP3 nc|ENSG00000229715|Q658K8|EEF1DP3 nc|ENSG00000229715|Q658K8|EEF1DP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2642517089844 3 490.262712 1467.76631 NaN NaN NaN NaN NaN NaN NaN 37.109 1 37.109 36.609 37.609 0 0 0 0 0.22632 1 6856 6856 3.0723 2.4869 1 23102 12604 15246 15251 22910 22910 0.05113316139545532 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2858276367188 2 532.784764 1063.55498 -0.24079 -0.00012829 0.078426 4.1784E-05 -0.16236 -8.6503E-05 532.7849379059159 68.054 1.5248 68.054 67.653 69.178 0 161 42 6 0 0 0 0.012534 5 13157 13114;13157;13199;13245;13289 99.755 33.299 1 758080000 23103 3222 15247 15252 22911;22912;22913;22914;22915 22912 0.025740193778119647 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2861328125 2 532.784764 1063.55498 -0.062151 -3.3113E-05 -0.098414 -5.2434E-05 -0.16057 -8.5547E-05 532.7848736708258 71.328 1.7032 68.079 67.67 69.374 -3.2492 161 47 6 0 0 0 0.012534 6 13875 13832;13855;13875;13928;13980;14030 99.755 27.833 1 699790000 23104 3222 15247 15252 22916;22917;22918;22919;22920;22921 22918 0.025740193778119647 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.285888671875 2 532.784764 1063.55498 0.70174 0.00037387 -0.85297 -0.00045445 -0.15123 -8.0575E-05 532.7844869102879 71.704 1.8591 68.076 67.664 69.523 -3.6275 172 51 6 0 0 0 0.012534 5 13516 13470;13516;13566;13616;13662 99.755 33.538 1 588630000 23105 3222 15247 15252 22922;22923;22924;22925;22926 22923 0.025740193778119647 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2859497070312 2 532.784764 1063.55498 0.41023 0.00021857 -0.67486 -0.00035955 -0.26462 -0.00014099 532.7845820580405 71.57 2.546 68.103 67.767 70.314 -3.4671 199 72 6 0 0 0 0.012534 5 13625 13520;13569;13625;13668;13715 99.755 33.538 1 604140000 23106 3222 15247 15252 22927;22928;22929;22930;22931 22929 0.025740193778119647 KIYIYTFFIYI 11 Unmodified _KIYIYTFFIYI_ 0 0 0 REV__tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1 REV__tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.39892578125 2 742.415414 1482.81628 NaN NaN NaN NaN NaN NaN NaN 144.18 1 144.18 143.68 144.68 0 0 0 0 0.23087 1 28798 28798 7.609 3.0801 1 + 23107 25059 15248 15253 22932 22932 0.09418006024861825 KIYSLNEGY 9 Unmodified _KIYSLNEGY_ 0 0 0 FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant;ENSG00000165140|ENST00000375326|FBP1;ENSG00000130957|ENST00000375337|FBP2 FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7750854492188 2 543.776939 1085.53933 0.0011878 6.4589E-07 -1.7232 -0.00093704 -1.722 -0.0009364 543.7760461776153 68.173 0.89421 68.173 67.79 68.684 0 57 24 3 0 0 0 0.42844 2 13126 13122;13126 24.021 8.2677 1 4072400 23108 3653 15249 15254 22933;22934 22934 -2.2671392343909247E-05 KIYSLNEGY 9 Unmodified _KIYSLNEGY_ 0 0 0 FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant;ENSG00000165140|ENST00000375326|FBP1;ENSG00000130957|ENST00000375337|FBP2 FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7757568359375 2 543.776939 1085.53933 0.086393 4.6978E-05 -1.6176 -0.00087961 -1.5312 -0.00083263 543.7760948092308 71.45 0.77656 68.201 67.816 68.593 -3.2492 46 21 3 0 0 0 0.2219 2 13876 13876;13887 36.127 5.9332 1 2543300 23109 3653 15249 15254 22935;22936 22935 -2.2671392343909247E-05 KKAKKKNKQR 10 Unmodified _KKAKKKNKQR_ 0 0 0 REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 628.8757934570312 2 628.917313 1255.82007 NaN NaN NaN NaN NaN NaN NaN 171.49 1 166.62 166.12 167.12 -4.873 0 0 0 2.8426 1 33989 33989 0.26539 0.26482 1 + 23110 16571 15250 15255 22937 22937 0.2023953336190516 KKAKSKET 8 Unmodified _KKAKSKET_ 0 0 0 GIPC2|p.K187Rfs*7|1|0.18|ENSG00000137960|chr1:78095080-78095080|A/-|frameshift_variant;ENSG00000137960|ENST00000370759|GIPC2 GIPC2|p.K187Rfs*7|1|0.18|ENSG00000137960|chr1:78095080-78095080|A/-|frameshift_variant GIPC2|p.K187Rfs*7|1|0.18|ENSG00000137960|chr1:78095080-78095080|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.19061279296875 3 307.190553 918.549831 NaN NaN NaN NaN NaN NaN NaN 158.84 1 154.04 153.54 154.54 -4.7952 0 0 0 0.21486 1 31589 31589 0.40072 0 1 23111 4131 15251 15256 22938 22938 0.08729760305857326 KKAKSRKKKK 10 Unmodified _KKAKSRKKKK_ 0 0 0 REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 615.9000854492188 2 615.430056 1228.84556 NaN NaN NaN NaN NaN NaN NaN 177.12 1 172.33 171.83 172.83 -4.7898 0 0 0 2.8426 1 36226 36226 0.13989 0 1 + 23112 13404 15252 15257 22939 22939 0.2402900788433726 KKCIFVNIN 9 Unmodified _KKCIFVNIN_ 0 0 0 REV__nc|ENSG00000063176|Q9NRA0-3|SPHK2 REV__nc|ENSG00000063176|Q9NRA0-3|SPHK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2071228027344 3 360.207438 1077.60049 NaN NaN NaN NaN NaN NaN NaN 128.18 1 123.55 123.05 124.05 -4.6292 0 0 0 0.23508 1 25275 25275 0.96228 0.18574 1 + 23113 23942 15253 15258 22940 22940 0.064789663592137 KKCIFVNIN 9 Unmodified _KKCIFVNIN_ 0 0 0 REV__nc|ENSG00000063176|Q9NRA0-3|SPHK2 REV__nc|ENSG00000063176|Q9NRA0-3|SPHK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2068176269531 3 360.207438 1077.60049 NaN NaN NaN NaN NaN NaN NaN 109.3 1 105.12 104.62 105.62 -4.1826 0 0 0 0.19636 1 21034 21034 0.40827 0.28045 1 + 23114 23942 15253 15258 22941 22941 0.064789663592137 KKCNAHYN 8 Unmodified _KKCNAHYN_ 0 0 0 SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2 SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 489.2326354980469 2 489.234719 976.454884 NaN NaN NaN NaN NaN NaN NaN 25.639 1 25.639 25.139 26.139 0 0 0 0 0.21486 1 4459 4459 9.3474 0 1 23115 6315 15254 15259 22942 22942 -0.034284964369931004 KKDFSLQN 8 Unmodified _KKDFSLQN_ 0 0 0 tr|U7T401|U7T401_FUSNUPurinenucleosidephosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00191PE=3SV=1 tr|U7T401|U7T401_FUSNUPurinenucleosidephosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00191PE=3SV=1 tr|U7T401|U7T401_FUSNUPurinenucleosidephosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00191PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2657470703125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 55.184 1 55.184 54.684 55.684 0 0 0 0 0.22847 1 10530 10530 10.074 8.3317 1 23116 26424 15255 15260 22943 22943 0.02332883409144415 KKDKHLKNI 9 Unmodified _KKDKHLKNI_ 0 0 0 CCDC178|p.N491K|1|0.08|ENSG00000166960|chr18:33245365-33245365|A/T|missense_variant CCDC178|p.N491K|1|0.08|ENSG00000166960|chr18:33245365-33245365|A/T|missense_variant CCDC178|p.N491K|1|0.08|ENSG00000166960|chr18:33245365-33245365|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21759033203125 3 375.236385 1122.68733 NaN NaN NaN NaN NaN NaN NaN 123.48 1 118.89 118.39 119.39 -4.5926 0 0 0 0.19622 1 23773 23773 0.0033805 0 1 23117 417 15256 15261 22944 22944 0.13089088905280732 KKDRSKNFE 9 Unmodified _KKDRSKNFE_ 0 0 0 tr|U7SWR4|U7SWR4_FUSNUtRNA(Ile)-lysidine/2-thiocytidinesynthaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01146PE=4SV=1 tr|U7SWR4|U7SWR4_FUSNUtRNA(Ile)-lysidine/2-thiocytidinesynthaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01146PE=4SV=1 tr|U7SWR4|U7SWR4_FUSNUtRNA(Ile)-lysidine/2-thiocytidinesynthaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01146PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.326171875 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 160.21 1 160.21 159.71 160.71 0 0 0 0 0.23508 1 32168 32168 9.3831 0.63772 1 23118 26255 15257 15262 22945 22945 0.04019031249231375 KKEEDIMTA 9 Unmodified _KKEEDIMTA_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.264404296875 2 532.768257 1063.52196 0.54108 0.00028827 -0.78372 -0.00041754 -0.24265 -0.00012927 532.7678029592407 29.551 0.62448 27.476 27.241 27.866 -2.0743 25 17 2 0 0 0 0.85111 1 5065 5065 10.824 4.1008 1 832340 23119 7646 15258 15263 22946 22946 -0.007259307365302448 KKEHLHIHDRM 11 Unmodified _KKEHLHIHDRM_ 0 0 0 REV__ENST00000426799.1_1_X:65041494-65041635:-|nuORF REV__ENST00000426799.1_1_X:65041494-65041635:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.12884521484375 4 361.696398 1442.75649 -0.23401 -8.464E-05 -0.60863 -0.00022014 -0.84264 -0.00030478 361.69621510459285 33.811 0.38233 33.811 33.69 34.073 0 16 10 2 0 0 0 0.89074 1 6192 6192 1.4551 0.94916 1 1188100 + 23120 21571 15259 15264 22947 22947 0.05281804862511308 KKEHLHIHDRM 11 Unmodified _KKEHLHIHDRM_ 0 0 0 REV__ENST00000426799.1_1_X:65041494-65041635:-|nuORF REV__ENST00000426799.1_1_X:65041494-65041635:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 361.696398 1442.75649 -0.68606 -0.00024815 -0.37984 -0.00013739 -1.0659 -0.00038553 361.6963015440522 36.263 0.56359 33.869 33.628 34.192 -2.3938 0.02872 0.00018738 NaN 1.4551 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1404500 + 23121 21571 15259 15264 0.05281804862511308 KKEHNSSV 8 Unmodified _KKEHNSSV_ 0 0 0 ENSG00000182898|ENST00000368806|TCHHL1 ENSG00000182898|ENST00000368806|TCHHL1 ENSG00000182898|ENST00000368806|TCHHL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16534423828125 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 67.525 1 64.199 63.699 64.699 -3.3268 0 0 0 0.23664 1 12733 12733 0.12286 0.058877 1 23122 6817 15260 15265 22948 22948 0.010754262322848263 KKEHRPSRI 9 Unmodified _KKEHRPSRI_ 0 0 0 REV__ENSG00000063244|ENST00000308924|U2AF2 REV__ENSG00000063244|ENST00000308924|U2AF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3156127929688 2 575.843813 1149.67307 0.3987 0.00022959 -1.1065 -0.00063718 -0.70781 -0.00040759 575.8430280591883 154.83 2.5682 149.58 147.54 150.11 -5.2527 156 72 3 0 0 0 0.7009 1 30058 30058 6.2058 1.8765 1 6641300 + 23123 14159 15261 15266 22949 22949 0.10422436476983421 KKELLILKFL 10 Unmodified _KKELLILKFL_ 0 0 0 REV__nc|ENSG00000105778|Q8NBF6-2|AVL9 REV__nc|ENSG00000105778|Q8NBF6-2|AVL9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7796630859375 2 622.920667 1243.82678 NaN NaN NaN NaN NaN NaN NaN 44.423 1 41.675 41.175 42.175 -2.7475 0 0 0 0.22588 1 8038 8038 0.40072 0 1 + 23124 15018 15262 15267 22950 22950 0.21462033469970265 KKEQPNAY 8 Unmodified _KKEQPNAY_ 0 0 0 REV__nc|ENSG00000170381|O15041-2|SEMA3E REV__nc|ENSG00000170381|O15041-2|SEMA3E MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26568603515625 2 489.256174 976.497795 0.0093034 4.5517E-06 -0.80452 -0.00039362 -0.79522 -0.00038907 489.25579318278295 63.63 0.41272 60.374 60.055 60.468 -3.2567 28 11 3 0 0 0 0.70613 1 11900 11900 13.508 3.3245 1 5208900 + 23125 18158 15263 15268 22951 22951 0.008605968920846863 KKETSEIFEDY 11 Unmodified _KKETSEIFEDY_ 0 0 0 tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1 tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1 tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 694.8380126953125 2 694.83264 1387.65073 NaN NaN NaN NaN NaN NaN NaN 171.76 1 166.84 166.34 167.34 -4.9149 0 0 0 0.22632 1 34036 34036 0.2986 0.1266 1 23126 26268 15264 15269 22952 22952 -0.02759297292618612 KKFFLKIKK 9 Unmodified _KKFFLKIKK_ 0 0 0 REV__ENST00000409458.3_2_7:23296839-23297073:+|nuORF REV__ENST00000409458.3_2_7:23296839-23297073:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.4046020507812 2 590.402444 1178.79034 NaN NaN NaN NaN NaN NaN NaN 167.72 1 162.93 162.43 163.43 -4.7898 0 0 0 0.1963 1 33858 33858 2.8827 2.6173 1 + 23127 21412 15265 15270 22953 22953 0.20809201363863394 KKFLIILI 8 Unmodified _KKFLIILI_ 0 0 0 tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1 tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1 tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 493.7715148925781 2 494.351889 986.689225 0.073564 3.6366E-05 0.43707 0.00021607 0.51063 0.00025243 494.35206081286145 102.11 0.79163 97.922 97.445 98.236 -4.1861 44 22 3 0 0 0 0.9003 1 20110 20110 0.0082765 0 1 2549300 23128 25889 15266 15271 22954 22954 0.19534749661204387 KKFLIILI 8 Unmodified _KKFLIILI_ 0 0 0 tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1 tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1 tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 494.351889 986.689225 0.3035 0.00015004 0.055613 2.7492E-05 0.35911 0.00017753 494.3518835966975 98.034 0.69482 98.034 97.742 98.437 0 0.10566 -0.00013659 NaN 0.0082765 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3424300 23129 25889 15266 15271 0.19534749661204387 KKFLIILI 8 Unmodified _KKFLIILI_ 0 0 0 tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1 tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1 tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 494.351889 986.689225 0.30851 0.00015251 0.018444 9.1178E-06 0.32696 0.00016163 494.35185182660905 102.16 0.67928 97.84 97.471 98.151 -4.3208 -0.088377 -0.00017334 NaN 0.0082765 39 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2819800 23130 25889 15266 15271 0.19534749661204387 KKFLIILI 8 Unmodified _KKFLIILI_ 0 0 0 tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1 tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1 tr|U7SFT6|U7SFT6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02228PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 494.351889 986.689225 0.26287 0.00012995 0.24702 0.00012211 0.50989 0.00025207 494.35193823521024 101.94 0.72374 97.918 97.494 98.217 -4.0212 -0.0102 5.2655E-05 NaN 0.0082765 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 3638100 23131 25889 15266 15271 0.19534749661204387 KKFMTECP 8 Unmodified _KKFMTECP_ 0 0 0 ENSG00000048545|ENST00000372958|GUCA1A ENSG00000048545|ENST00000372958|GUCA1A ENSG00000048545|ENST00000372958|GUCA1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 492.21197509765625 2 492.238081 982.461609 NaN NaN NaN NaN NaN NaN NaN 7.6443 1 6.5997 6.0997 7.0997 -1.0446 0 0 0 0.21486 1 673 673 0.69038 0 1 23132 1229 15267 15272 22955 22955 -0.030323196006179387 KKFNWRYLVID 11 Unmodified _KKFNWRYLVID_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3843383789062 2 741.416811 1480.81907 0.42823 0.0003175 0.34876 0.00025857 0.77699 0.00057607 741.9204219210126 169.35 0.16949 164.42 164.29 164.46 -4.9295 5 4 2 0 0 0 0.65515 1 33441 33441 3.0723 3.0409 1 14173000 23133 4958 15268 15273 22956 22956 0.09789274202375964 KKGAGGGG 8 Unmodified _KKGAGGGG_ 0 0 0 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.763427734375 1 631.3522 630.344923 0.37615 0.00023748 3.9099 0.0024685 4.2861 0.002706 631.3554628715242 151.79 0.28134 146.55 146.46 146.74 -5.2365 10 7 2 0 0 0 0.9003 1 29447 29447 0.0082765 0 1 1057800 23134 7508 15269 15274 22957 22957 0.014964462861485117 KKGKKKDP 8 Unmodified _KKGKKKDP_ 0 0 0 ENSG00000164104|ENST00000296503|HMGB2;ENST00000511316.1_1_4:174254218-174255486:-|nuORF;HMGB2|p.D84V|1|0.09|ENSG00000164104|chr4:173333114-173333114|T/A|missense_variant ENSG00000164104|ENST00000296503|HMGB2 ENSG00000164104|ENST00000296503|HMGB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16436767578125 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 158.65 1 153.37 152.87 153.87 -5.2712 0 0 0 0.2396 1 30781 30781 0 0 1 23135 5508 15270 15275 22958 22958 0.11986056922410171 KKGNGPRIA 9 Unmodified _KKGNGPRIA_ 0 0 0 tr|U7SQU6|U7SQU6_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01587PE=3SV=1 tr|U7SQU6|U7SQU6_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01587PE=3SV=1 tr|U7SQU6|U7SQU6_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01587PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.19573974609375 3 314.194409 939.561398 NaN NaN NaN NaN NaN NaN NaN 63.532 1 60.534 60.034 61.034 -2.9975 0 0 0 0.23508 1 12279 12279 1.0715 0 1 23136 26064 15271 15276 22959 22959 0.08920002119850778 KKGPSGYGF 9 Unmodified _KKGPSGYGF_ 0 0 0 nc|ENSG00000109062|O14745-2|NHERF1;ENSG00000109062|ENST00000262613|NHERF1 nc|ENSG00000109062|O14745-2|NHERF1 nc|ENSG00000109062|O14745-2|NHERF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1678771972656 3 314.167749 939.481417 NaN NaN NaN NaN NaN NaN NaN 83.655 1 83.655 83.155 84.155 0 0 0 0 0.23508 1 16311 16311 2.7352 0.89096 1 23137 2512 15272 15277 22960 22960 0.009255157259985936 KKGPSGYGF 9 Unmodified _KKGPSGYGF_ 0 0 0 nc|ENSG00000109062|O14745-2|NHERF1;ENSG00000109062|ENST00000262613|NHERF1 nc|ENSG00000109062|O14745-2|NHERF1 nc|ENSG00000109062|O14745-2|NHERF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1593322753906 3 314.167749 939.481417 NaN NaN NaN NaN NaN NaN NaN 84.518 1 84.518 84.018 85.018 0 0 0 0 0.23508 1 16488 16488 2.7352 0.23671 1 23138 2512 15272 15277 22961 22961 0.009255157259985936 KKGPSGYGF 9 Unmodified _KKGPSGYGF_ 0 0 0 nc|ENSG00000109062|O14745-2|NHERF1;ENSG00000109062|ENST00000262613|NHERF1 nc|ENSG00000109062|O14745-2|NHERF1 nc|ENSG00000109062|O14745-2|NHERF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1677551269531 3 314.167749 939.481417 NaN NaN NaN NaN NaN NaN NaN 84.658 1 84.658 84.158 85.158 0 0 0 0 0.23508 1 16517 16517 2.7352 0.89096 1 23139 2512 15272 15277 22962 22962 0.009255157259985936 KKGTHTSA 8 Unmodified _KKGTHTSA_ 0 0 0 REV__nc|ENSG00000197062|Q16670-2|ZSCAN26 REV__nc|ENSG00000197062|Q16670-2|ZSCAN26 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2731018066406 2 415.229959 828.445365 NaN NaN NaN NaN NaN NaN NaN 30.252 1 28.359 27.859 28.859 -1.8928 0 0 0 0.21486 1 5177 5177 4.756 0 1 + 23140 19300 15273 15278 22963 22963 0.02428058549128309 KKGYFGPSG 9 Unmodified _KKGYFGPSG_ 0 0 0 REV__COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant REV__COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1678466796875 3 314.167749 939.481417 NaN NaN NaN NaN NaN NaN NaN 59.797 1 56.483 55.983 56.983 -3.3139 0 0 0 0.23508 1 11127 11127 1.0715 0 1 + 23141 13481 15274 15279 22964 22964 0.009255157260099622 KKHGYIKMF 9 Unmodified _KKHGYIKMF_ 0 0 0 ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3216552734375 2 576.323337 1150.63212 NaN NaN NaN NaN NaN NaN NaN 40.415 1 37.926 37.426 38.426 -2.4896 0 0 0 0.1963 1 7233 7233 0.12781 0 1 23142 64 15275 15280 22965 22965 0.06282959113150355 KKHIRIELD 9 Unmodified _KKHIRIELD_ 0 0 0 REV__nc|ENSG00000135205|Q8IYE0-2|CCDC146 REV__nc|ENSG00000135205|Q8IYE0-2|CCDC146 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3268432617188 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 158.77 1 153.5 153 154 -5.2712 0 0 0 0.19626 1 30807 30807 0.40827 0.14288 1 + 23143 13284 15276 15281 22966 22966 0.11292785042633113 KKHKKKRL 8 Unmodified _KKHKKKRL_ 0 0 0 ENST00000482846.1_1_15:63447754-63448774:-|nuORF;ENSG00000185088|ENST00000330964|RPS27L ENST00000482846.1_1_15:63447754-63448774:-|nuORF ENST00000482846.1_1_15:63447754-63448774:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2745971679688 2 533.37201 1064.72947 NaN NaN NaN NaN NaN NaN NaN 131.74 1 127.1 126.6 127.6 -4.6399 0 0 0 0.23899 1 25961 25961 1.3295 1.0225 1 23144 10404 15277 15282 22967 22967 0.19969109104317795 KKIDEKDLV 9 Unmodified _KKIDEKDLV_ 0 0 0 tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1 tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1 tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.2276916503906 3 363.216768 1086.62847 NaN NaN NaN NaN NaN NaN NaN 120.35 1 115.83 115.33 116.33 -4.5221 0 0 0 0.23508 1 23730 23730 1.0715 0 1 23145 26189 15278 15283 22968 22968 0.08862567820256118 KKIFILLIV 9 Unmodified _KKIFILLIV_ 0 0 0 tr|U7SJP8|U7SJP8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02046PE=4SV=1 tr|U7SJP8|U7SJP8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02046PE=4SV=1 tr|U7SJP8|U7SJP8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02046PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.774169921875 2 543.886096 1085.75764 NaN NaN NaN NaN NaN NaN NaN 173.03 1 168.13 167.63 168.63 -4.8977 0 0 0 0.23508 1 34341 34341 0.52476 0 1 23146 25950 15279 15284 22969 22969 0.21818994241016298 KKIKERKKH 9 Unmodified _KKIKERKKH_ 0 0 0 ENST00000399799.2_1_18:18608764-18608845:-|nuORF ENST00000399799.2_1_18:18608764-18608845:-|nuORF ENST00000399799.2_1_18:18608764-18608845:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 597.8171997070312 2 597.893306 1193.77206 NaN NaN NaN NaN NaN NaN NaN 167.32 1 162.53 162.03 163.03 -4.7898 0 0 0 0.23508 1 33730 33730 4.3292 0.73274 1 23147 9501 15280 15285 22970 22970 0.18292459441863684 KKIKTLYLPT 10 Unmodified _KKIKTLYLPT_ 0 0 0 tr|U7SLC0|U7SLC0_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01962PE=4SV=1 tr|U7SLC0|U7SLC0_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01962PE=4SV=1 tr|U7SLC0|U7SLC0_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01962PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 402.26800537109375 3 402.260308 1203.7591 NaN NaN NaN NaN NaN NaN NaN 177.32 1 172.42 171.92 172.92 -4.9008 0 0 0 0.22588 1 35361 35361 0.13989 0.056541 1 23148 25983 15281 15286 22971 22971 0.1653658353911851 KKILGKMV 8 Unmodified _KKILGKMV_ 0 0 0 nc|ENSG00000145779|O95379-3|TNFAIP8;nc|ENSG00000145779|O95379-2|TNFAIP8;ENSG00000145779|ENST00000504771|TNFAIP8;ENST00000415806.2_1_5:118727135-118729073:+|nuORF;nc|ENSG00000145779|O95379-4|TNFAIP8 nc|ENSG00000145779|O95379-3|TNFAIP8 nc|ENSG00000145779|O95379-3|TNFAIP8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.82763671875 2 458.804248 915.593944 NaN NaN NaN NaN NaN NaN NaN 75.869 1 72.235 71.735 72.735 -3.6337 0 0 0 0.2396 1 14430 14430 0.12286 0 1 23149 4620 15282 15287 22972 22972 0.13277073198491962 KKILLILILL 10 Unmodified _KKILLILILL_ 0 0 0 REV__ENSG00000177098|ENST00000324727|SCN4B REV__ENSG00000177098|ENST00000324727|SCN4B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2562255859375 2 590.443778 1178.873 NaN NaN NaN NaN NaN NaN NaN 44.88 1 42.114 41.614 42.614 -2.7661 0 0 0 0.22588 1 8137 8137 0.40072 0.40072 1 + 23150 18539 15283 15288 22973 22973 0.29072098372057553 KKILLILILL 10 Unmodified _KKILLILILL_ 0 0 0 REV__ENSG00000177098|ENST00000324727|SCN4B REV__ENSG00000177098|ENST00000324727|SCN4B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2605590820312 2 590.443778 1178.873 NaN NaN NaN NaN NaN NaN NaN 130.09 1 125.32 124.82 125.82 -4.7725 0 0 0 2.8426 1 25030 25030 0.0013812 0.0013812 1 + 23151 18539 15283 15288 22974 22974 0.29072098372057553 KKILTICAR 9 Unmodified _KKILTICAR_ 0 0 0 SAMD9|p.F339Ifs*12|1|0.34|ENSG00000205413|chr7:93105083-93105084|-/T|frameshift_variant SAMD9|p.F339Ifs*12|1|0.34|ENSG00000205413|chr7:93105083-93105084|-/T|frameshift_variant SAMD9|p.F339Ifs*12|1|0.34|ENSG00000205413|chr7:93105083-93105084|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 349.22369384765625 3 349.2232 1044.64777 NaN NaN NaN NaN NaN NaN NaN 113.62 1 109.35 108.85 109.85 -4.2725 0 0 0 0.19623 1 21882 21882 0.073264 0 1 23152 25634 15284 15289 22975 22975 0.12723245630172642 KKINLKRF 8 Unmodified _KKINLKRF_ 0 0 0 tr|U7SU50|U7SU50_FUSNUYjbRproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01100PE=4SV=1 tr|U7SU50|U7SU50_FUSNUYjbRproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01100PE=4SV=1 tr|U7SU50|U7SU50_FUSNUYjbRproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01100PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6994018554688 2 523.845294 1045.67603 NaN NaN NaN NaN NaN NaN NaN 153.3 1 148.53 148.03 149.03 -4.7684 0 0 0 0.21486 1 30464 30464 8.5933 0 1 23153 26187 15285 15290 22976 22976 0.15502311601790097 KKIVPKKKKP 10 Unmodified _KKIVPKKKKP_ 0 0 0 ENSG00000104332|ENST00000220772|SFRP1 ENSG00000104332|ENST00000220772|SFRP1 ENSG00000104332|ENST00000220772|SFRP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 597.4200439453125 2 597.426451 1192.83835 NaN NaN NaN NaN NaN NaN NaN 166.73 1 161.78 161.28 162.28 -4.9484 0 0 0 2.8426 1 32704 32704 0.69767 0.69628 1 23154 2229 15286 15291 22977 22977 0.24964275283923598 KKIWIIKIKK 10 Unmodified _KKIWIIKIKK_ 0 0 0 REV__ENST00000202017.5_1_20:30534352-30536619:-|nuORF REV__ENST00000202017.5_1_20:30534352-30536619:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 649.5370483398438 2 649.457751 1296.90095 NaN NaN NaN NaN NaN NaN NaN 165.36 1 165.36 164.86 165.86 0 0 0 0 2.8426 1 33547 33547 0.0013812 0 1 + 23155 19992 15287 15292 22978 22978 0.2643742135210232 KKIYKKIESEL 11 Unmodified _KKIYKKIESEL_ 0 0 0 REV__tr|U7T4V3|U7T4V3_FUSNUUPF0213proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00205PE=3SV=1 REV__tr|U7T4V3|U7T4V3_FUSNUUPF0213proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00205PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24151611328125 3 460.28166 1377.82315 NaN NaN NaN NaN NaN NaN NaN 77.721 1 74.258 73.758 74.758 -3.4633 0 0 0 0.22632 1 15174 15174 1.4551 0.75745 1 + 23156 25397 15288 15293 22979 22979 0.14935318905440909 KKIYPTVNC 9 Unmodified _KKIYPTVNC_ 0 0 0 nc|ENSG00000113889|P01042-3|KNG1;nc|ENSG00000113889|P01042-2|KNG1;ENSG00000113889|ENST00000644859|KNG1 nc|ENSG00000113889|P01042-3|KNG1 nc|ENSG00000113889|P01042-3|KNG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2863159179688 2 533.291702 1064.56885 NaN NaN NaN NaN NaN NaN NaN 152.42 1 147.18 146.68 147.68 -5.2365 0 0 0 0.23508 1 29550 29550 6.7232 0.96273 1 23157 2768 15289 15294 22980 22980 0.03914973605265004 KKKAAKKA 8 Unmodified _KKKAAKKA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2154846191406 2 436.805637 871.596721 0.027662 1.2083E-05 -0.016568 -7.237E-06 0.011094 4.8461E-06 436.80558644704433 12.81 0.14373 12.81 12.718 12.861 0 5 3 2 0 0 0 1.0273 1 1818 1818 2.3027 0 1 957770 23158 7133 15290 15295 22981 22981 0.15578664647648566 KKKAARGR 8 Unmodified _KKKAARGR_ 0 0 0 REV__nc|ENSG00000118689|O43524-2|FOXO3 REV__nc|ENSG00000118689|O43524-2|FOXO3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2193603515625 2 457.80396 913.593367 NaN NaN NaN NaN NaN NaN NaN 89.596 1 85.737 85.237 86.237 -3.8595 0 0 0 0.21486 1 17529 17529 7.9102 3.1541 1 + 23159 15561 15291 15296 22982 22982 0.13311414593647442 KKKDKKKKRKH 11 Unmodified _KKKDKKKKRKH_ 0 0 0 NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 726.354736328125 2 726.485894 1450.95723 NaN NaN NaN NaN NaN NaN NaN 173.15 1 173.15 172.65 173.65 0 0 0 0 0.23698 1 35791 35791 0.30703 0 1 23160 12709 15292 15297 22983 22983 0.2497944224148796 KKKDKKKKRS 10 Unmodified _KKKDKKKKRS_ 0 0 0 REV__NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant REV__NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2375183105469 3 425.285739 1272.83539 NaN NaN NaN NaN NaN NaN NaN 21.374 1 21.374 20.874 21.874 0 0 0 0 0.22588 1 3574 3574 0.12286 0.039514 1 + 23161 24382 15293 15298 22984 22984 0.20988400159126286 KKKDKKKKRS 10 Unmodified _KKKDKKKKRS_ 0 0 0 REV__NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant REV__NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2145690917969 3 425.285739 1272.83539 NaN NaN NaN NaN NaN NaN NaN 54.078 1 50.943 50.443 51.443 -3.1352 0 0 0 0.22588 1 9966 9966 0.62683 0.063655 1 + 23162 24382 15293 15298 22985 22985 0.20988400159126286 KKKFFLKR 8 Unmodified _KKKFFLKR_ 0 0 0 REV__ENST00000303221.9_1_5:49694656-49694779:-|nuORF REV__ENST00000303221.9_1_5:49694656-49694779:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7744750976562 2 547.863486 1093.71242 0.56571 0.00030993 3.5581 0.0019494 4.1238 0.0022593 548.3683158904238 165.47 0.1676 160.52 160.39 160.56 -4.9484 6 4 2 0 0 0 1.0254 1 32325 32325 5.2307 0 1 13094000 + 23163 20417 15294 15299 22986 22986 0.16931188498506344 KKKFHGKG 8 Unmodified _KKKFHGKG_ 0 0 0 REV__ENST00000462927.5_1_22:37699411-37707619:+|nuORF REV__ENST00000462927.5_1_22:37699411-37707619:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2469177246094 2 465.287611 928.56067 NaN NaN NaN NaN NaN NaN NaN 177.04 1 172.16 171.66 172.66 -4.8739 0 0 0 0.21486 1 35227 35227 0.69038 0 1 + 23164 21914 15295 15300 22987 22987 0.0935320747081505 KKKFHGKG 8 Unmodified _KKKFHGKG_ 0 0 0 REV__ENST00000462927.5_1_22:37699411-37707619:+|nuORF REV__ENST00000462927.5_1_22:37699411-37707619:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2470703125 2 465.287611 928.56067 NaN NaN NaN NaN NaN NaN NaN 177.27 1 172.39 171.89 172.89 -4.8739 0 0 0 0.21486 1 35275 35275 0.69038 0 1 + 23165 21914 15295 15300 22988 22988 0.0935320747081505 KKKFRRRRRLF 11 Unmodified _KKKFRRRRRLF_ 0 0 0 REV__ENSG00000176692|ENST00000649859|FOXC2 REV__ENSG00000176692|ENST00000649859|FOXC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 531.1481323242188 3 531.014577 1590.0219 NaN NaN NaN NaN NaN NaN NaN 166.1 1 161.15 160.65 161.65 -4.9484 0 0 0 0.22632 1 32513 32513 0.026206 0.026206 1 + 23166 18517 15296 15301 22989 22989 0.25049061838126363 KKKGKAKKK 9 Unmodified _KKKGKAKKK_ 0 0 0 ENSG00000106299|ENST00000223023|WASL;WASL|p.V422Wfs*17|2|0.27|ENSG00000106299|chr7:123692431-123692431|T/-|frameshift_variant ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2733764648438 2 522.374218 1042.73388 NaN NaN NaN NaN NaN NaN NaN 152.04 1 152.04 151.54 152.54 0 0 0 0 0.19635 1 30453 30453 0.0033805 0.0033805 1 23167 2373 15297 15302 22990 22990 0.21422573527206623 KKKHKKPLII 10 Unmodified _KKKHKKPLII_ 0 0 0 REV__ENSG00000130826|ENST00000369550|DKC1 REV__ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 616.9323120117188 2 616.9319 1231.84925 NaN NaN NaN NaN NaN NaN NaN 168.32 1 163.53 163.03 164.03 -4.7898 0 0 0 2.8426 1 34014 34014 0.0013812 0.0013812 1 + 23168 16034 15298 15303 22991 22991 0.24259677658233159 KKKHRSKKY 9 Unmodified _KKKHRSKKY_ 0 0 0 NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant;ENST00000477789.5_1_X:119059185-119070773:-|nuORF;ENSG00000101882|ENST00000371410|NKAP NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2802734375 2 601.877656 1201.74076 NaN NaN NaN NaN NaN NaN NaN 45.174 1 45.174 44.674 45.674 0 0 0 0 0.23508 1 8486 8486 4.3292 1.0479 1 23169 2092 15299 15304 22992 22992 0.14795886407796388 KKKIGTSVT 9 Unmodified _KKKIGTSVT_ 0 0 0 REV__ENSG00000163535|ENST00000357799|SGO2 REV__ENSG00000163535|ENST00000357799|SGO2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.18780517578125 3 321.206203 960.596781 NaN NaN NaN NaN NaN NaN NaN 12.39 1 11.381 10.881 11.881 -1.0098 0 0 0 0.23508 1 1716 1716 0 0 1 + 23170 17583 15300 15305 22993 22993 0.11490619857022466 KKKKGGKV 8 Unmodified _KKKKGGKV_ 0 0 0 REV__RPL22|p.K89Nfs*3|1|0.38|ENSG00000116251|chr1:6186792-6186792|T/-|frameshift_variant REV__RPL22|p.K89Nfs*3|1|0.38|ENSG00000116251|chr1:6186792-6186792|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21612548828125 2 436.805637 871.596721 -0.71191 -0.00031097 0.28899 0.00012623 -0.42292 -0.00018473 436.80585863286115 13.469 0.13429 12.297 12.212 12.346 -1.173 5 3 2 0 0 0 1.0273 1 1750 1750 2.3027 0 1 141130 + 23171 15476 15301 15306 22994 22994 0.15578664647671303 KKKKIKKKCA 10 Unmodified _KKKKIKKKCA_ 0 0 0 ENST00000265678.8_1_6:166824683-166824764:-|nuORF ENST00000265678.8_1_6:166824683-166824764:-|nuORF ENST00000265678.8_1_6:166824683-166824764:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.284423828125 2 601.91011 1201.80567 1.2787 0.00076967 1.4326 0.00086231 2.7113 0.001632 601.9104648607724 118.76 0.17981 114.25 114.18 114.36 -4.502 5 4 2 0 0 0 1.1347 1 23430 23430 0.0013812 0.0013812 1 949450 23172 8362 15302 15307 22995 22995 0.21283744889433365 KKKKIKKKCA 10 Unmodified _KKKKIKKKCA_ 0 0 0 ENST00000265678.8_1_6:166824683-166824764:-|nuORF ENST00000265678.8_1_6:166824683-166824764:-|nuORF ENST00000265678.8_1_6:166824683-166824764:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2870483398438 2 601.91011 1201.80567 0.43555 0.00026216 1.7711 0.001066 2.2067 0.0013282 601.9093583061776 141.2 0.21216 136.22 136.1 136.31 -4.9877 6 5 2 0 0 0 1.1347 1 27192 27192 0 0 1 1160900 23173 8362 15302 15307 22996 22996 0.21283744889433365 KKKKIKKKCAA 11 Unmodified _KKKKIKKKCAA_ 0 0 0 ENST00000265678.8_1_6:166824683-166824764:-|nuORF ENST00000265678.8_1_6:166824683-166824764:-|nuORF ENST00000265678.8_1_6:166824683-166824764:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2423095703125 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 45.582 1 42.741 42.241 43.241 -2.8409 0 0 0 0.22632 1 8590 8590 0.026206 0.026206 1 23174 8362 15303 15308 22997 22997 0.21727416435192026 KKKKIKKKCAA 11 Unmodified _KKKKIKKKCAA_ 0 0 0 ENST00000265678.8_1_6:166824683-166824764:-|nuORF ENST00000265678.8_1_6:166824683-166824764:-|nuORF ENST00000265678.8_1_6:166824683-166824764:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2520751953125 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 173.97 1 169.08 168.58 169.58 -4.8916 0 0 0 0.23698 1 34612 34612 0.40827 0.24894 1 23175 8362 15303 15308 22998 22998 0.21727416435192026 KKKKIKKLVF 10 Unmodified _KKKKIKKLVF_ 0 0 0 REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1 REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.748779296875 2 630.449926 1258.8853 NaN NaN NaN NaN NaN NaN NaN 25.963 1 24.315 23.815 24.815 -1.6482 0 0 0 0.22588 1 4568 4568 0 0 1 + 23176 14423 15304 15309 22999 22999 0.2662113483504527 KKKKIKKLVF 10 Unmodified _KKKKIKKLVF_ 0 0 0 REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1 REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.4805297851562 2 630.449926 1258.8853 NaN NaN NaN NaN NaN NaN NaN 170.11 1 165.32 164.82 165.82 -4.7898 0 0 0 2.8426 1 34502 34502 0.0013812 0.0013812 1 + 23177 14423 15304 15309 23000 23000 0.2662113483504527 KKKKILTGY 9 Unmodified _KKKKILTGY_ 0 0 0 REV__ENST00000396355.5_1_16:15818941-15819124:+|nuORF REV__ENST00000396355.5_1_16:15818941-15819124:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016296386719 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 116.74 1 112.16 111.66 112.66 -4.5815 0 0 0 0.23508 1 22401 22401 1.1933 0 1 + 23178 21277 15305 15310 23001 23001 0.15527758679127146 KKKKKEKKV 9 Unmodified _KKKKKEKKV_ 0 0 0 ENST00000341776.6_1_6:15521185-15521434:+|nuORF ENST00000341776.6_1_6:15521185-15521434:+|nuORF ENST00000341776.6_1_6:15521185-15521434:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 572.3992919921875 2 572.400433 1142.78631 NaN NaN NaN NaN NaN NaN NaN 162.86 1 162.86 162.36 163.36 0 0 0 0 0.23508 1 32778 32778 0.52476 0 1 23179 8859 15306 15311 23002 23002 0.22063111870147623 KKKKKGPLV 9 Unmodified _KKKKKGPLV_ 0 0 0 REV__ENSG00000150990|ENST00000308736|DHX37 REV__ENSG00000150990|ENST00000308736|DHX37 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 512.9127197265625 2 513.363319 1024.71209 -0.38004 -0.0001951 1.3653 0.00070091 0.98529 0.00050581 513.8656582726809 150.1 0.1362 144.9 144.78 144.92 -5.1994 5 3 2 0 0 0 0.64208 1 29081 29081 0.073264 0.073264 1 1437400 + 23180 17047 15307 15312 23003 23003 0.20071768778643673 KKKKKHKEKG 10 Unmodified _KKKKKHKEKG_ 0 0 0 REV__ENST00000450133.5_1_7:32956958-32982633:-|nuORF REV__ENST00000450133.5_1_7:32956958-32982633:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 620.432373046875 2 619.906414 1237.79827 0.68028 0.00042171 -2.6765 -0.0016592 -1.9962 -0.0012374 619.9060102161454 166.28 0.16541 161.33 161.21 161.38 -4.9484 5 4 2 0 0 0 0.48215 1 32573 32573 3.5927 0 1 15871000 + 23181 17694 15308 15313 23004 23004 0.1888872861334221 KKKKKHRK 8 Unmodified _KKKKKHRK_ 0 0 0 ENSG00000164609|ENST00000297151|SLU7 ENSG00000164609|ENST00000297151|SLU7 ENSG00000164609|ENST00000297151|SLU7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.27685546875 2 540.877459 1079.74037 NaN NaN NaN NaN NaN NaN NaN 165.58 1 160.6 160.1 161.1 -4.9811 0 0 0 0.21486 1 32377 32377 2.3027 1.6124 1 23182 5555 15309 15314 23005 23005 0.20368511478591245 KKKKKIKEKY 10 Unmodified _KKKKKIKEKY_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 660.93701171875 2 660.939922 1319.86529 NaN NaN NaN NaN NaN NaN NaN 54.761 1 51.626 51.126 52.126 -3.1352 0 0 0 0.22588 1 10113 10113 0.45834 0.057624 1 23183 1620 15310 15315 23006 23006 0.21815339104455234 KKKKKKAC 8 Unmodified _KKKKKKAC_ 0 0 0 ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF ENST00000522197.1_1_8:122652185-122654912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.2174377441406 3 321.216157 960.626641 NaN NaN NaN NaN NaN NaN NaN 74.085 1 70.721 70.221 71.221 -3.3643 0 0 0 0.21486 1 14450 14450 0.45834 0.45834 1 23184 10770;11759 15311 15316 23007 23007 0.1447528032133505 KKKKKKAC 8 Unmodified _KKKKKKAC_ 0 0 0 ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF ENST00000522197.1_1_8:122652185-122654912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 321.2170715332031 3 321.216157 960.626641 NaN NaN NaN NaN NaN NaN NaN 65.143 1 61.685 61.185 62.185 -3.4581 0 0 0 0.21486 1 12185 12185 0.45834 0.45834 1 23185 10770;11759 15311 15316 23008 23008 0.1447528032133505 KKKKKKAC 8 Unmodified _KKKKKKAC_ 0 0 0 ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF ENST00000522197.1_1_8:122652185-122654912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.1864929199219 3 321.216157 960.626641 NaN NaN NaN NaN NaN NaN NaN 64.946 1 61.663 61.163 62.163 -3.2832 0 0 0 0.21486 1 12201 12201 1.6526 1.6526 1 23186 10770;11759 15311 15316 23009 23009 0.1447528032133505 KKKKKKAG 8 Unmodified _KKKKKKAG_ 0 0 0 REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF;REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant;REV__NMT2|p.E57Gfs*15|1|0.27|ENSG00000152465|chr10:15141500-15141501|-/T|frameshift_variant REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.887451171875 3 305.886917 914.63892 NaN NaN NaN NaN NaN NaN NaN 7.5083 1 6.4934 5.9934 6.9934 -1.0148 0 0 0 0.21486 1 613 613 0 0 1 + 23187 21392;24368;24369 15312 15317 23010 23010 0.1781864005603211 KKKKKKARA 9 Unmodified _KKKKKKARA_ 0 0 0 ENST00000505030.5_1_5:87961954-87962140:-|nuORF ENST00000505030.5_1_5:87961954-87962140:-|nuORF ENST00000505030.5_1_5:87961954-87962140:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7931518554688 2 543.385117 1084.75568 0.34134 0.00018548 2.7443 0.0014912 3.0857 0.0016767 543.385778506426 152.49 0.18045 152.49 152.34 152.52 0 6 4 2 0 0 0 0.88442 1 30542 30542 0.52476 0 1 1597200 23188 10665 15313 15318 23011 23011 0.21669378275782947 KKKKKKKAC 9 Unmodified _KKKKKKKAC_ 0 0 0 ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF ENST00000522197.1_1_8:122652185-122654912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 363.91412353515625 3 363.914478 1088.7216 NaN NaN NaN NaN NaN NaN NaN 10.08 1 9.0139 8.5139 9.5139 -1.0664 0 0 0 0.23508 1 1070 1070 0 0 1 23189 10770;11759 15314 15319 23012 23012 0.18079213792520932 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 391.1081237792969 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 170.46 1 165.67 165.17 166.17 -4.7898 0 0 0 0.22588 1 34598 34598 0 0 1 + 23190 16194 15315 15320 23013 23013 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 391.28436279296875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 172.41 1 167.62 167.12 168.12 -4.7898 0 0 0 0.22588 1 35122 35122 0 0 1 + 23191 16194 15315 15320 23014 23014 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 391.2846984863281 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 170.38 1 165.51 165.01 166.01 -4.873 0 0 0 0.22588 1 33715 33715 0 0 1 + 23192 16194 15315 15320 23015 23015 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 391.1085205078125 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 173.48 1 168.6 168.1 169.1 -4.881 0 0 0 0.22588 1 34490 34490 0 0 1 + 23193 16194 15315 15320 23016 23016 0.25026506998415243 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.3001403808594 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.323 1 17.323 16.823 17.823 0 0 0 0 0.22588 1 2738 2738 0 0 1 23194 6369 15316 15321 23017 23017 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.3000793457031 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 46.958 1 46.958 46.458 47.458 0 0 0 0 0.22588 1 8848 8848 0 0 1 23195 6369 15316 15321 23018 23018 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 47.323 1 47.323 46.823 47.823 0 0 0 0 0.22588 1 8922 8922 0 0 1 23196 6369 15316 15321 23019 23019 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 9.3657 1 8.5714 8.0714 9.0714 -0.79424 0 0 0 2.8426 1 1075 1075 0 0 1 23197 6369 15316 15321 23020 23020 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 9.5863 1 8.792 8.292 9.292 -0.79424 0 0 0 2.8426 1 1121 1121 0 0 1 23198 6369 15316 15321 23021 23021 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 9.8834 1 9.0891 8.5891 9.5891 -0.79424 0 0 0 2.8426 1 1184 1184 0 0 1 23199 6369 15316 15321 23022 23022 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 12.526 1 11.516 11.016 12.016 -1.0098 0 0 0 0.22588 1 1746 1746 0 0 1 23200 6369 15316 15321 23023 23023 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.2925109863281 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 14.902 1 13.788 13.288 14.288 -1.1142 0 0 0 0.22588 1 2265 2265 0 0 1 23201 6369 15316 15321 23024 23024 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.656 1 16.345 15.845 16.845 -1.3109 0 0 0 0.22588 1 2838 2838 0 0 1 23202 6369 15316 15321 23025 23025 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3003845214844 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.611 1 18.214 17.714 18.714 -1.3966 0 0 0 0.22588 1 3238 3238 0 0 1 23203 6369 15316 15321 23026 23026 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.311767578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.992 1 20.517 20.017 21.017 -1.4742 0 0 0 0.22588 1 3741 3741 0 0 1 23204 6369 15316 15321 23027 23027 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.732 1 25.95 25.45 26.45 -1.7821 0 0 0 0.22588 1 4937 4937 0 0 1 23205 6369 15316 15321 23028 23028 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 28.435 1 26.479 25.979 26.979 -1.9561 0 0 0 0.22588 1 5086 5086 0 0 1 23206 6369 15316 15321 23029 23029 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.31146240234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 28.499 1 26.542 26.042 27.042 -1.9561 0 0 0 0.22588 1 5099 5099 0 0 1 23207 6369 15316 15321 23030 23030 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.242 1 28.125 27.625 28.625 -2.1167 0 0 0 0.22588 1 5455 5455 0 0 1 23208 6369 15316 15321 23031 23031 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.30023193359375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 31.759 1 29.528 29.028 30.028 -2.2305 0 0 0 0.22588 1 5773 5773 0 0 1 23209 6369 15316 15321 23032 23032 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3002624511719 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 32.888 1 30.657 30.157 31.157 -2.2305 0 0 0 0.22588 1 6002 6002 0 0 1 23210 6369 15316 15321 23033 23033 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 151.67 1 146.92 146.42 147.42 -4.7523 0 0 0 0.22588 1 30138 30138 0 0 1 23211 6369 15316 15321 23034 23034 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.30126953125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 178.33 1 173.54 173.04 174.04 -4.7898 0 0 0 0.22588 1 36484 36484 0 0 1 23212 6369 15316 15321 23035 23035 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.0727233886719 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 5.1646 1 4.1246 3.6246 4.6246 -1.04 0 0 0 0.22588 1 223 223 0 0 1 23213 6369 15316 15321 23036 23036 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.915 1 20.53 20.03 21.03 -1.3847 0 0 0 0.22588 1 3468 3468 0 0 1 23214 6369 15316 15321 23037 23037 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.300048828125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 62.404 1 59.035 58.535 59.535 -3.3694 0 0 0 0.22588 1 11647 11647 0 0 1 23215 6369 15316 15321 23038 23038 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 67.179 1 63.683 63.183 64.183 -3.4965 0 0 0 0.22588 1 12600 12600 0 0 1 23216 6369 15316 15321 23039 23039 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.3009338378906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 75.936 1 72.213 71.713 72.713 -3.7227 0 0 0 0.22588 1 14370 14370 0 0 1 23217 6369 15316 15321 23040 23040 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.3112487792969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 28.523 1 26.526 26.026 27.026 -1.9962 0 0 0 0.22588 1 4818 4818 0 0 1 23218 6369 15316 15321 23041 23041 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 32.711 1 30.562 30.062 31.062 -2.1483 0 0 0 0.22588 1 5678 5678 0 0 1 23219 6369 15316 15321 23042 23042 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.29998779296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 38.744 1 36.339 35.839 36.839 -2.4049 0 0 0 0.22588 1 6903 6903 0 0 1 23220 6369 15316 15321 23043 23043 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 51.845 1 48.793 48.293 49.293 -3.0517 0 0 0 0.22588 1 9560 9560 0 0 1 23221 6369 15316 15321 23044 23044 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 69.682 1 66.291 65.791 66.791 -3.3903 0 0 0 0.22588 1 13184 13184 0 0 1 23222 6369 15316 15321 23045 23045 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 83.775 1 80.076 79.576 80.576 -3.6985 0 0 0 0.22588 1 15998 15998 0 0 1 23223 6369 15316 15321 23046 23046 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.3000793457031 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 108.9 1 104.71 104.21 105.21 -4.1826 0 0 0 0.22588 1 20957 20957 0 0 1 23224 6369 15316 15321 23047 23047 0.27787366549569015 KKKKKKKGM 9 Unmodified _KKKKKKKGM_ 0 0 0 REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 552.5474243164062 2 552.375904 1102.73725 NaN NaN NaN NaN NaN NaN NaN 163.79 1 163.79 163.29 164.29 0 0 0 0 0.19631 1 33049 33049 0.20686 0.20686 1 + 23225 20383 15317 15322 23048 23048 0.18999500309587347 KKKKKKKGSL 10 Unmodified _KKKKKKKGSL_ 0 0 0 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;SLC4A4|p.N1031Sfs*30|1|0.06|ENSG00000080493|chr4:71560246-71560247|-/GCTAC|frameshift_variant;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 586.9131469726562 2 586.913707 1171.81286 NaN NaN NaN NaN NaN NaN NaN 169.85 1 164.92 164.42 165.42 -4.9295 0 0 0 2.8426 1 33557 33557 0.043787 0 1 23226 1612 15318 15323 23049 23049 0.23382800761510225 KKKKKKKK 8 Unmodified _KKKKKKKK_ 0 0 0 ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;ENST00000368679.8_1_10:127702855-127703017:-|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;ENST00000495836.1_1_2:69771529-69870271:-|nuORF;ENSG00000130826|ENST00000369550|DKC1;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENSG00000248383|ENST00000253807|PCDHAC1;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;TRPM1|p.Q811Tfs*12|1|0.28|ENSG00000134160|chr15:31037785-31037786|-/T|frameshift_variant;TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;nc|ENSG00000089335|Q9NR11|ZNF302;ENST00000373344.9_1_X:76762287-76762440:-|nuORF;ENST00000349223.9_1_16:68260779-68260980:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000235750|ENST00000423313|KIAA0040;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000055044|ENST00000264279|NOP58;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1;KNOP1|p.A158Gfs*16|1|0.3|ENSG00000103550|chr16:19714568-19714569|-/T|frameshift_variant;KNOP1|p.K156Rfs*57|1|0.32|ENSG00000103550|chr16:19714569-19714569|T/-|frameshift_variant;KNOP1|p.K217Nfs*23|2|0.19|ENSG00000103550|chr16:19714384-19714385|TT/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;ENSG00000164609|ENST00000297151|SLU7;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7;ENSG00000181585|ENST00000643606|TMIE;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;ENSG00000183354|ENST00000399933|KIAA2026;ENSG00000189134|ENST00000343684|NKAPL;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000204969|ENST00000526136|PCDHA2;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant ENSG00000028310|ENST00000467963|BRD9;REV__LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;nc|ENSG00000174780|O76094-2|SRP72;REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENSG00000130826|ENST00000369550|DKC1;REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;REV__AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;REV__KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;ENSG00000248383|ENST00000253807|PCDHAC1;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;REV__ENSG00000255408|ENST00000522353|PCDHA3;REV__ENSG00000239389|ENST00000289272|PCDHA13;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__ENST00000487688.1_1_5:889867-892539:-|nuORF;REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF;REV__ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF;REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF;ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF;REV__ENSG00000189134|ENST00000343684|NKAPL;nc|ENSG00000089335|Q9NR11|ZNF302;ENSG00000106346|ENST00000306177|USP42;REV__PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000235750|ENST00000423313|KIAA0040;REV__ENSG00000251664|ENST00000398631|PCDHA12;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;REV__nc|ENSG00000174780|O76094-2|SRP72;REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF;REV__ENSG00000102290|ENST00000682573|PCDH11X;REV__SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000070814|Q13428-2|TCOF1;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000055044|ENST00000264279|NOP58;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000164609|ENST00000297151|SLU7;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000181585|ENST00000643606|TMIE;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;ENSG00000189134|ENST00000343684|NKAPL;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000204969|ENST00000526136|PCDHA2;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant;REV__ENSG00000130826|ENST00000369550|DKC1;REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1;REV__ENSG00000243232|ENST00000289269|PCDHAC2;REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10;REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF;REV__ENST00000495836.1_1_2:69771529-69870271:-|nuORF;REV__ENST00000567998.5_1_16:28621482-28621938:-|nuORF;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2653198242188 2 522.392411 1042.77027 NaN NaN NaN NaN NaN NaN NaN 156.62 1 151.83 151.33 152.33 -4.7885 0 0 0 0.2396 1 31146 31146 0.0082765 0.0082765 1 23227 3644;14268;11759;6369;22093;10770;13032;7216;3830;21697;16194;16034;8889;14833;15895;18832;9548;18431;19831;1439;7623;2379;12246;1149;2199;4713;22384;19799;19823;14893;21111;14010;19774;21392;19855;7891;5555;6364;6843;6730;15230;7624;8852;9004;20761;9875;9813;139;18427;1139;14289;9388;11389;21232;21231;1470;9387;20854;19196;14000;15047;7822;23136;13021;20923;2348;138;1271;25698 15319 15324 23050 23050 0.2505945042391886 KKKKKKKK 8 Unmodified _KKKKKKKK_ 0 0 0 ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;ENST00000368679.8_1_10:127702855-127703017:-|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;ENST00000495836.1_1_2:69771529-69870271:-|nuORF;ENSG00000130826|ENST00000369550|DKC1;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENSG00000248383|ENST00000253807|PCDHAC1;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;TRPM1|p.Q811Tfs*12|1|0.28|ENSG00000134160|chr15:31037785-31037786|-/T|frameshift_variant;TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;nc|ENSG00000089335|Q9NR11|ZNF302;ENST00000373344.9_1_X:76762287-76762440:-|nuORF;ENST00000349223.9_1_16:68260779-68260980:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000235750|ENST00000423313|KIAA0040;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000055044|ENST00000264279|NOP58;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1;KNOP1|p.A158Gfs*16|1|0.3|ENSG00000103550|chr16:19714568-19714569|-/T|frameshift_variant;KNOP1|p.K156Rfs*57|1|0.32|ENSG00000103550|chr16:19714569-19714569|T/-|frameshift_variant;KNOP1|p.K217Nfs*23|2|0.19|ENSG00000103550|chr16:19714384-19714385|TT/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;ENSG00000164609|ENST00000297151|SLU7;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7;ENSG00000181585|ENST00000643606|TMIE;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;ENSG00000183354|ENST00000399933|KIAA2026;ENSG00000189134|ENST00000343684|NKAPL;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000204969|ENST00000526136|PCDHA2;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant ENSG00000028310|ENST00000467963|BRD9;REV__LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;nc|ENSG00000174780|O76094-2|SRP72;REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENSG00000130826|ENST00000369550|DKC1;REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;REV__AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;REV__KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;ENSG00000248383|ENST00000253807|PCDHAC1;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;REV__ENSG00000255408|ENST00000522353|PCDHA3;REV__ENSG00000239389|ENST00000289272|PCDHA13;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__ENST00000487688.1_1_5:889867-892539:-|nuORF;REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF;REV__ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF;REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF;ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF;REV__ENSG00000189134|ENST00000343684|NKAPL;nc|ENSG00000089335|Q9NR11|ZNF302;ENSG00000106346|ENST00000306177|USP42;REV__PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000235750|ENST00000423313|KIAA0040;REV__ENSG00000251664|ENST00000398631|PCDHA12;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;REV__nc|ENSG00000174780|O76094-2|SRP72;REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF;REV__ENSG00000102290|ENST00000682573|PCDH11X;REV__SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000070814|Q13428-2|TCOF1;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000055044|ENST00000264279|NOP58;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000164609|ENST00000297151|SLU7;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000181585|ENST00000643606|TMIE;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;ENSG00000189134|ENST00000343684|NKAPL;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000204969|ENST00000526136|PCDHA2;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant;REV__ENSG00000130826|ENST00000369550|DKC1;REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1;REV__ENSG00000243232|ENST00000289269|PCDHAC2;REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10;REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF;REV__ENST00000495836.1_1_2:69771529-69870271:-|nuORF;REV__ENST00000567998.5_1_16:28621482-28621938:-|nuORF;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2653198242188 2 522.392411 1042.77027 NaN NaN NaN NaN NaN NaN NaN 156.64 1 151.86 151.36 152.36 -4.7885 0 0 0 0.21486 1 31150 31150 0 0 1 23228 3644;14268;11759;6369;22093;10770;13032;7216;3830;21697;16194;16034;8889;14833;15895;18832;9548;18431;19831;1439;7623;2379;12246;1149;2199;4713;22384;19799;19823;14893;21111;14010;19774;21392;19855;7891;5555;6364;6843;6730;15230;7624;8852;9004;20761;9875;9813;139;18427;1139;14289;9388;11389;21232;21231;1470;9387;20854;19196;14000;15047;7822;23136;13021;20923;2348;138;1271;25698 15319 15324 23051 23051 0.2505945042391886 KKKKKKKK 8 Unmodified _KKKKKKKK_ 0 0 0 ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;ENST00000368679.8_1_10:127702855-127703017:-|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;ENST00000495836.1_1_2:69771529-69870271:-|nuORF;ENSG00000130826|ENST00000369550|DKC1;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENSG00000248383|ENST00000253807|PCDHAC1;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;TRPM1|p.Q811Tfs*12|1|0.28|ENSG00000134160|chr15:31037785-31037786|-/T|frameshift_variant;TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;nc|ENSG00000089335|Q9NR11|ZNF302;ENST00000373344.9_1_X:76762287-76762440:-|nuORF;ENST00000349223.9_1_16:68260779-68260980:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000235750|ENST00000423313|KIAA0040;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000055044|ENST00000264279|NOP58;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1;KNOP1|p.A158Gfs*16|1|0.3|ENSG00000103550|chr16:19714568-19714569|-/T|frameshift_variant;KNOP1|p.K156Rfs*57|1|0.32|ENSG00000103550|chr16:19714569-19714569|T/-|frameshift_variant;KNOP1|p.K217Nfs*23|2|0.19|ENSG00000103550|chr16:19714384-19714385|TT/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;ENSG00000164609|ENST00000297151|SLU7;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7;ENSG00000181585|ENST00000643606|TMIE;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;ENSG00000183354|ENST00000399933|KIAA2026;ENSG00000189134|ENST00000343684|NKAPL;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000204969|ENST00000526136|PCDHA2;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant ENSG00000028310|ENST00000467963|BRD9;REV__LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;nc|ENSG00000174780|O76094-2|SRP72;REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENSG00000130826|ENST00000369550|DKC1;REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;REV__AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;REV__KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;ENSG00000248383|ENST00000253807|PCDHAC1;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;REV__ENSG00000255408|ENST00000522353|PCDHA3;REV__ENSG00000239389|ENST00000289272|PCDHA13;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__ENST00000487688.1_1_5:889867-892539:-|nuORF;REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF;REV__ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF;REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF;ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF;REV__ENSG00000189134|ENST00000343684|NKAPL;nc|ENSG00000089335|Q9NR11|ZNF302;ENSG00000106346|ENST00000306177|USP42;REV__PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000235750|ENST00000423313|KIAA0040;REV__ENSG00000251664|ENST00000398631|PCDHA12;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;REV__nc|ENSG00000174780|O76094-2|SRP72;REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF;REV__ENSG00000102290|ENST00000682573|PCDH11X;REV__SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000070814|Q13428-2|TCOF1;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000055044|ENST00000264279|NOP58;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000164609|ENST00000297151|SLU7;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000181585|ENST00000643606|TMIE;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;ENSG00000189134|ENST00000343684|NKAPL;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000204969|ENST00000526136|PCDHA2;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant;REV__ENSG00000130826|ENST00000369550|DKC1;REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1;REV__ENSG00000243232|ENST00000289269|PCDHAC2;REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10;REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF;REV__ENST00000495836.1_1_2:69771529-69870271:-|nuORF;REV__ENST00000567998.5_1_16:28621482-28621938:-|nuORF;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2762451171875 2 522.392411 1042.77027 NaN NaN NaN NaN NaN NaN NaN 156.67 1 151.88 151.38 152.38 -4.7885 0 0 0 0.2396 1 31154 31154 0.0082765 0.0082765 1 23229 3644;14268;11759;6369;22093;10770;13032;7216;3830;21697;16194;16034;8889;14833;15895;18832;9548;18431;19831;1439;7623;2379;12246;1149;2199;4713;22384;19799;19823;14893;21111;14010;19774;21392;19855;7891;5555;6364;6843;6730;15230;7624;8852;9004;20761;9875;9813;139;18427;1139;14289;9388;11389;21232;21231;1470;9387;20854;19196;14000;15047;7822;23136;13021;20923;2348;138;1271;25698 15319 15324 23052 23052 0.2505945042391886 KKKKKKKK 8 Unmodified _KKKKKKKK_ 0 0 0 ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;ENST00000368679.8_1_10:127702855-127703017:-|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;ENST00000495836.1_1_2:69771529-69870271:-|nuORF;ENSG00000130826|ENST00000369550|DKC1;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENSG00000248383|ENST00000253807|PCDHAC1;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;TRPM1|p.Q811Tfs*12|1|0.28|ENSG00000134160|chr15:31037785-31037786|-/T|frameshift_variant;TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;nc|ENSG00000089335|Q9NR11|ZNF302;ENST00000373344.9_1_X:76762287-76762440:-|nuORF;ENST00000349223.9_1_16:68260779-68260980:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000235750|ENST00000423313|KIAA0040;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000055044|ENST00000264279|NOP58;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1;KNOP1|p.A158Gfs*16|1|0.3|ENSG00000103550|chr16:19714568-19714569|-/T|frameshift_variant;KNOP1|p.K156Rfs*57|1|0.32|ENSG00000103550|chr16:19714569-19714569|T/-|frameshift_variant;KNOP1|p.K217Nfs*23|2|0.19|ENSG00000103550|chr16:19714384-19714385|TT/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;ENSG00000164609|ENST00000297151|SLU7;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7;ENSG00000181585|ENST00000643606|TMIE;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;ENSG00000183354|ENST00000399933|KIAA2026;ENSG00000189134|ENST00000343684|NKAPL;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000204969|ENST00000526136|PCDHA2;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant ENSG00000028310|ENST00000467963|BRD9;REV__LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;nc|ENSG00000174780|O76094-2|SRP72;REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENSG00000130826|ENST00000369550|DKC1;REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;REV__AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;REV__KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;ENSG00000248383|ENST00000253807|PCDHAC1;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;REV__ENSG00000255408|ENST00000522353|PCDHA3;REV__ENSG00000239389|ENST00000289272|PCDHA13;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__ENST00000487688.1_1_5:889867-892539:-|nuORF;REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF;REV__ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF;REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF;ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF;REV__ENSG00000189134|ENST00000343684|NKAPL;nc|ENSG00000089335|Q9NR11|ZNF302;ENSG00000106346|ENST00000306177|USP42;REV__PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000235750|ENST00000423313|KIAA0040;REV__ENSG00000251664|ENST00000398631|PCDHA12;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;REV__nc|ENSG00000174780|O76094-2|SRP72;REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF;REV__ENSG00000102290|ENST00000682573|PCDH11X;REV__SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000070814|Q13428-2|TCOF1;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000055044|ENST00000264279|NOP58;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000164609|ENST00000297151|SLU7;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000181585|ENST00000643606|TMIE;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;ENSG00000189134|ENST00000343684|NKAPL;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000204969|ENST00000526136|PCDHA2;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant;REV__ENSG00000130826|ENST00000369550|DKC1;REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1;REV__ENSG00000243232|ENST00000289269|PCDHAC2;REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10;REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF;REV__ENST00000495836.1_1_2:69771529-69870271:-|nuORF;REV__ENST00000567998.5_1_16:28621482-28621938:-|nuORF;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2762451171875 2 522.392411 1042.77027 NaN NaN NaN NaN NaN NaN NaN 156.68 1 151.89 151.39 152.39 -4.7885 0 0 0 0.21486 1 31157 31157 0 0 1 23230 3644;14268;11759;6369;22093;10770;13032;7216;3830;21697;16194;16034;8889;14833;15895;18832;9548;18431;19831;1439;7623;2379;12246;1149;2199;4713;22384;19799;19823;14893;21111;14010;19774;21392;19855;7891;5555;6364;6843;6730;15230;7624;8852;9004;20761;9875;9813;139;18427;1139;14289;9388;11389;21232;21231;1470;9387;20854;19196;14000;15047;7822;23136;13021;20923;2348;138;1271;25698 15319 15324 23053 23053 0.2505945042391886 KKKKKKKK 8 Unmodified _KKKKKKKK_ 0 0 0 ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;ENST00000368679.8_1_10:127702855-127703017:-|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;ENST00000495836.1_1_2:69771529-69870271:-|nuORF;ENSG00000130826|ENST00000369550|DKC1;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENSG00000248383|ENST00000253807|PCDHAC1;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;TRPM1|p.Q811Tfs*12|1|0.28|ENSG00000134160|chr15:31037785-31037786|-/T|frameshift_variant;TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;nc|ENSG00000089335|Q9NR11|ZNF302;ENST00000373344.9_1_X:76762287-76762440:-|nuORF;ENST00000349223.9_1_16:68260779-68260980:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000235750|ENST00000423313|KIAA0040;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000055044|ENST00000264279|NOP58;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1;KNOP1|p.A158Gfs*16|1|0.3|ENSG00000103550|chr16:19714568-19714569|-/T|frameshift_variant;KNOP1|p.K156Rfs*57|1|0.32|ENSG00000103550|chr16:19714569-19714569|T/-|frameshift_variant;KNOP1|p.K217Nfs*23|2|0.19|ENSG00000103550|chr16:19714384-19714385|TT/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;ENSG00000164609|ENST00000297151|SLU7;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7;ENSG00000181585|ENST00000643606|TMIE;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;ENSG00000183354|ENST00000399933|KIAA2026;ENSG00000189134|ENST00000343684|NKAPL;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000204969|ENST00000526136|PCDHA2;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant ENSG00000028310|ENST00000467963|BRD9;REV__LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;nc|ENSG00000174780|O76094-2|SRP72;REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENSG00000130826|ENST00000369550|DKC1;REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;REV__AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;REV__KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;ENSG00000248383|ENST00000253807|PCDHAC1;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;REV__ENSG00000255408|ENST00000522353|PCDHA3;REV__ENSG00000239389|ENST00000289272|PCDHA13;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__ENST00000487688.1_1_5:889867-892539:-|nuORF;REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF;REV__ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF;REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF;ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF;REV__ENSG00000189134|ENST00000343684|NKAPL;nc|ENSG00000089335|Q9NR11|ZNF302;ENSG00000106346|ENST00000306177|USP42;REV__PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000235750|ENST00000423313|KIAA0040;REV__ENSG00000251664|ENST00000398631|PCDHA12;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;REV__nc|ENSG00000174780|O76094-2|SRP72;REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF;REV__ENSG00000102290|ENST00000682573|PCDH11X;REV__SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000070814|Q13428-2|TCOF1;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000055044|ENST00000264279|NOP58;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000164609|ENST00000297151|SLU7;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000181585|ENST00000643606|TMIE;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;ENSG00000189134|ENST00000343684|NKAPL;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000204969|ENST00000526136|PCDHA2;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant;REV__ENSG00000130826|ENST00000369550|DKC1;REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1;REV__ENSG00000243232|ENST00000289269|PCDHAC2;REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10;REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF;REV__ENST00000495836.1_1_2:69771529-69870271:-|nuORF;REV__ENST00000567998.5_1_16:28621482-28621938:-|nuORF;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2714233398438 2 522.392411 1042.77027 NaN NaN NaN NaN NaN NaN NaN 62.584 1 59.179 58.679 59.679 -3.4046 0 0 0 0.21486 1 11682 11682 0 0 1 23231 3644;14268;11759;6369;22093;10770;13032;7216;3830;21697;16194;16034;8889;14833;15895;18832;9548;18431;19831;1439;7623;2379;12246;1149;2199;4713;22384;19799;19823;14893;21111;14010;19774;21392;19855;7891;5555;6364;6843;6730;15230;7624;8852;9004;20761;9875;9813;139;18427;1139;14289;9388;11389;21232;21231;1470;9387;20854;19196;14000;15047;7822;23136;13021;20923;2348;138;1271;25698 15319 15324 23054 23054 0.2505945042391886 KKKKKKKK 8 Unmodified _KKKKKKKK_ 0 0 0 ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;ENST00000368679.8_1_10:127702855-127703017:-|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;ENST00000495836.1_1_2:69771529-69870271:-|nuORF;ENSG00000130826|ENST00000369550|DKC1;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENSG00000248383|ENST00000253807|PCDHAC1;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;TRPM1|p.Q811Tfs*12|1|0.28|ENSG00000134160|chr15:31037785-31037786|-/T|frameshift_variant;TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;nc|ENSG00000089335|Q9NR11|ZNF302;ENST00000373344.9_1_X:76762287-76762440:-|nuORF;ENST00000349223.9_1_16:68260779-68260980:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000235750|ENST00000423313|KIAA0040;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000055044|ENST00000264279|NOP58;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1;KNOP1|p.A158Gfs*16|1|0.3|ENSG00000103550|chr16:19714568-19714569|-/T|frameshift_variant;KNOP1|p.K156Rfs*57|1|0.32|ENSG00000103550|chr16:19714569-19714569|T/-|frameshift_variant;KNOP1|p.K217Nfs*23|2|0.19|ENSG00000103550|chr16:19714384-19714385|TT/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;ENSG00000164609|ENST00000297151|SLU7;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7;ENSG00000181585|ENST00000643606|TMIE;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;ENSG00000183354|ENST00000399933|KIAA2026;ENSG00000189134|ENST00000343684|NKAPL;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000204969|ENST00000526136|PCDHA2;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant ENSG00000028310|ENST00000467963|BRD9;REV__LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;nc|ENSG00000174780|O76094-2|SRP72;REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENSG00000130826|ENST00000369550|DKC1;REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;REV__AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;REV__KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;ENSG00000248383|ENST00000253807|PCDHAC1;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;REV__ENSG00000255408|ENST00000522353|PCDHA3;REV__ENSG00000239389|ENST00000289272|PCDHA13;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__ENST00000487688.1_1_5:889867-892539:-|nuORF;REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF;REV__ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF;REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF;ENSG00000072657|ENST00000261180|TRHDE;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF;REV__ENSG00000189134|ENST00000343684|NKAPL;nc|ENSG00000089335|Q9NR11|ZNF302;ENSG00000106346|ENST00000306177|USP42;REV__PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000235750|ENST00000423313|KIAA0040;REV__ENSG00000251664|ENST00000398631|PCDHA12;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;REV__nc|ENSG00000174780|O76094-2|SRP72;REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF;REV__ENSG00000102290|ENST00000682573|PCDH11X;REV__SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000070814|Q13428-2|TCOF1;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000055044|ENST00000264279|NOP58;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000164609|ENST00000297151|SLU7;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000181585|ENST00000643606|TMIE;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;ENSG00000189134|ENST00000343684|NKAPL;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000204969|ENST00000526136|PCDHA2;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant;REV__ENSG00000130826|ENST00000369550|DKC1;REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1;REV__ENSG00000243232|ENST00000289269|PCDHAC2;REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10;REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF;REV__ENST00000495836.1_1_2:69771529-69870271:-|nuORF;REV__ENST00000567998.5_1_16:28621482-28621938:-|nuORF;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2713623046875 2 522.392411 1042.77027 NaN NaN NaN NaN NaN NaN NaN 73.635 1 70.041 69.541 70.541 -3.594 0 0 0 0.2396 1 13977 13977 0.0082765 0.0082765 1 23232 3644;14268;11759;6369;22093;10770;13032;7216;3830;21697;16194;16034;8889;14833;15895;18832;9548;18431;19831;1439;7623;2379;12246;1149;2199;4713;22384;19799;19823;14893;21111;14010;19774;21392;19855;7891;5555;6364;6843;6730;15230;7624;8852;9004;20761;9875;9813;139;18427;1139;14289;9388;11389;21232;21231;1470;9387;20854;19196;14000;15047;7822;23136;13021;20923;2348;138;1271;25698 15319 15324 23055 23055 0.2505945042391886 KKKKKKKKKSF 11 Unmodified _KKKKKKKKKSF_ 0 0 0 ENST00000344423.9_1_8:28205640-28205820:-|nuORF ENST00000344423.9_1_8:28205640-28205820:-|nuORF ENST00000344423.9_1_8:28205640-28205820:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 469.3283996582031 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 8.3613 1 7.6822 7.1822 8.1822 -0.67913 0 0 0 0.22632 1 860 860 0 0 1 23233 8889 15320 15325 23056 23056 0.279389961581046 KKKKKKKKRKP 11 Unmodified _KKKKKKKKRKP_ 0 0 0 ENST00000340726.7_1_8:72274331-72274436:-|nuORF ENST00000340726.7_1_8:72274331-72274436:-|nuORF ENST00000340726.7_1_8:72274331-72274436:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 475.68072509765625 3 475.680312 1424.01911 NaN NaN NaN NaN NaN NaN NaN 134.9 1 130.09 129.59 130.59 -4.8175 0 0 0 0.22632 1 25972 25972 0.094841 0.094277 1 23234 8852 15321 15326 23057 23057 0.3240579366060956 KKKKKKKLA 9 Unmodified _KKKKKKKLA_ 0 0 0 AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 550.0613403320312 2 550.405518 1098.79648 NaN NaN NaN NaN NaN NaN NaN 164.26 1 159.22 158.72 159.72 -5.0446 0 0 0 0.23508 1 32023 32023 0.52476 0 1 23235 138 15322 15327 23058 23058 0.2510371959542681 KKKKKKKLLC 10 Unmodified _KKKKKKKLLC_ 0 0 0 REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7583618164062 2 622.933586 1243.85262 NaN NaN NaN NaN NaN NaN NaN 21.226 1 19.751 19.251 20.251 -1.4742 0 0 0 2.8426 1 3582 3582 0 0 1 + 23236 13021 15323 15328 23059 23059 0.24044604440587136 KKKKKKKLLC 10 Unmodified _KKKKKKKLLC_ 0 0 0 REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7583618164062 2 622.933586 1243.85262 NaN NaN NaN NaN NaN NaN NaN 21.238 1 19.764 19.264 20.264 -1.4742 0 0 0 0.22588 1 3584 3584 0 0 1 + 23237 13021 15323 15328 23060 23060 0.24044604440587136 KKKKKKKLLC 10 Unmodified _KKKKKKKLLC_ 0 0 0 REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7658081054688 2 622.933586 1243.85262 NaN NaN NaN NaN NaN NaN NaN 94.279 1 90.136 89.636 90.636 -4.1435 0 0 0 2.8426 1 17981 17981 0.0013812 0 1 + 23238 13021 15323 15328 23061 23061 0.24044604440587136 KKKKKKKRAT 10 Unmodified _KKKKKKKRAT_ 0 0 0 REV__ENST00000567998.5_1_16:28621482-28621938:-|nuORF REV__ENST00000567998.5_1_16:28621482-28621938:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.4398803710938 2 622.437881 1242.86121 NaN NaN NaN NaN NaN NaN NaN 170.25 1 165.46 164.96 165.96 -4.7898 0 0 0 2.8426 1 34542 34542 0.13989 0.13989 1 + 23239 23136 15324 15329 23062 23062 0.24949294401403677 KKKKKKLF 8 Unmodified _KKKKKKLF_ 0 0 0 REV__ENST00000495836.1_1_2:69771529-69870271:-|nuORF;REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 524.3746337890625 2 524.373687 1046.73282 NaN NaN NaN NaN NaN NaN NaN 168.93 1 164.01 163.51 164.51 -4.9295 0 0 0 0.2396 1 33329 33329 0.12286 0 1 + 23240 22384;21069 15325 15330 23063 23063 0.21132359158309555 KKKKKKQLCL 10 Unmodified _KKKKKKQLCL_ 0 0 0 REV__AluSc_dup13832|chr7:33006087-33006413:-|3.3176111198493|0.4159080058002372|3.0|482.0|7|2|sense REV__AluSc_dup13832|chr7:33006087-33006413:-|3.3176111198493|0.4159080058002372|3.0|482.0|7|2|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7786865234375 2 622.915393 1243.81623 NaN NaN NaN NaN NaN NaN NaN 134.45 1 134.45 133.95 134.95 0 0 0 0 0.22588 1 26615 26615 1.6526 0 1 + 23241 13022 15326 15331 23064 23064 0.20407727543874898 KKKKKKRRKKW 11 Unmodified _KKKKKKRRKKW_ 0 0 0 ENST00000439685.6_1_3:112358751-112359896:-|nuORF ENST00000439685.6_1_3:112358751-112359896:-|nuORF ENST00000439685.6_1_3:112358751-112359896:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 514.6893920898438 3 514.691211 1541.0518 NaN NaN NaN NaN NaN NaN NaN 169.55 1 164.76 164.26 165.26 -4.7898 0 0 0 0.22632 1 34353 34353 0.0059557 0.0059557 1 23242 9875 15327 15332 23065 23065 0.3029200078347003 KKKKKKSKKT 10 Unmodified _KKKKKKSKKT_ 0 0 0 ENST00000265340.11_1_5:134364111-134364312:-|nuORF ENST00000265340.11_1_5:134364111-134364312:-|nuORF ENST00000265340.11_1_5:134364111-134364312:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 616.3582153320312 2 616.432264 1230.84998 NaN NaN NaN NaN NaN NaN NaN 169.33 1 169.33 168.83 169.83 0 0 0 0 0.22588 1 34748 34748 0.40072 0 1 23243 8355 15328 15333 23066 23066 0.243784723072622 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 419.1940002441406 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 129.58 1 129.58 129.08 130.08 0 0 0 0 2.8426 1 25601 25601 0.0013812 0.0013812 1 + 23244 19082 15329 15334 23067 23067 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 419.315673828125 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 145.67 1 145.67 145.17 146.17 0 0 0 0 0.22588 1 29116 29116 0 0 1 + 23245 19082 15329 15334 23068 23068 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 419.3232727050781 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 147.55 1 147.55 147.05 148.05 0 0 0 0 0.22588 1 29514 29514 0 0 1 + 23246 19082 15329 15334 23069 23069 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 419.3152160644531 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 151.67 1 151.67 151.17 152.17 0 0 0 0 0.22588 1 30376 30376 0 0 1 + 23247 19082 15329 15334 23070 23070 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 419.1601867675781 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 54.1 1 51.216 50.716 51.716 -2.8837 0 0 0 0.22588 1 10316 10316 0 0 1 + 23248 19082 15329 15334 23071 23071 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 419.3153381347656 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 143.73 1 139.07 138.57 139.57 -4.656 0 0 0 0.22588 1 28441 28441 0 0 1 + 23249 19082 15329 15334 23072 23072 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 419.315673828125 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 174.54 1 169.75 169.25 170.25 -4.7898 0 0 0 0.22588 1 35662 35662 0 0 1 + 23250 19082 15329 15334 23073 23073 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 628.646240234375 2 628.46865 1254.92275 NaN NaN NaN NaN NaN NaN NaN 168.59 1 163.66 163.16 164.16 -4.9295 0 0 0 2.8426 1 33243 33243 0.0013812 0.0013812 1 + 23251 19082 15329 15334 23074 23074 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 419.4436950683594 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 179.54 1 174.67 174.17 175.17 -4.868 0 0 0 2.8426 1 35771 35771 0.0013812 0.0013812 1 + 23252 19082 15329 15334 23075 23075 0.3054822610070005 KKKKKLCK 8 Unmodified _KKKKKLCK_ 0 0 0 ENST00000368346.7_1_1:155305486-155305633:-|nuORF ENST00000368346.7_1_1:155305486-155305633:-|nuORF ENST00000368346.7_1_1:155305486-155305633:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.231689453125 3 335.231807 1002.67359 NaN NaN NaN NaN NaN NaN NaN 57.644 1 57.644 57.144 58.144 0 0 0 0 0.21486 1 11024 11024 0 0 1 23253 9095 15330 15335 23076 23076 0.1723613987248882 KKKKKLLL 8 Unmodified _KKKKKLLL_ 0 0 0 ENST00000389266.7_1_7:30673494-30673641:+|nuORF;ENSG00000198929|ENST00000361897|NOS1AP REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF;REV__ENST00000485024.1_1_3:184529997-184533630:+|nuORF REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 499.8745422363281 2 499.876062 997.737572 NaN NaN NaN NaN NaN NaN NaN 169.42 1 164.63 164.13 165.13 -4.7898 0 0 0 0.23711 1 34319 34319 0.62683 0 1 + 23254 21111;22214 15331 15336 23077 23077 0.23861243301098511 KKKKKMMIP 9 Unmodified _KKKKKMMIP_ 0 0 0 REV__MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant REV__MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 566.2828979492188 2 566.358865 1130.70318 0.37559 0.00021272 -0.60025 -0.00033996 -0.22466 -0.00012724 566.8593406670685 150.26 0.73483 145.13 145 145.73 -5.1204 28 20 2 0 0 0 0.64208 1 29191 29191 0.40827 0.40827 1 3941200 + 23255 14071 15332 15337 23078 23078 0.14305335826315968 KKKKKRRMRQP 11 Unmodified _KKKKKRRMRQP_ 0 0 0 REV__KIAA1217|p.G1042Efs*92|1|0.09|ENSG00000120549|chr10:24531867-24531867|G/-|frameshift_variant REV__KIAA1217|p.G1042Efs*92|1|0.09|ENSG00000120549|chr10:24531867-24531867|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3895263671875 2 742.477546 1482.94054 NaN NaN NaN NaN NaN NaN NaN 171.95 1 167.07 166.57 167.57 -4.873 0 0 0 0.23698 1 34093 34093 1.1933 0.84271 1 + 23256 23713 15333 15338 23079 23079 0.2183861808389338 KKKKKSGKR 9 Unmodified _KKKKKSGKR_ 0 0 0 REV__ENST00000608340.5_1_6:127606381-127606462:+|nuORF REV__ENST00000608340.5_1_6:127606381-127606462:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 363.1806945800781 3 363.252258 1086.73495 NaN NaN NaN NaN NaN NaN NaN 47.251 1 44.301 43.801 44.801 -2.9499 0 0 0 0.19622 1 8622 8622 1.2148 0 1 + 23257 23479 15334 15339 23080 23080 0.19504787896130438 KKKKKSKNQK 10 Unmodified _KKKKKSKNQK_ 0 0 0 REV__ARSJ|p.K574N|1|0.16|ENSG00000180801|chr4:113902352-113902352|C/A|missense_variant REV__ARSJ|p.K574N|1|0.16|ENSG00000180801|chr4:113902352-113902352|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7679443359375 2 622.911696 1243.80884 NaN NaN NaN NaN NaN NaN NaN 167.51 1 162.56 162.06 163.06 -4.948 0 0 0 2.8426 1 32956 32956 3.8763 1.9488 1 + 23258 13127 15335 15340 23081 23081 0.1966871126778642 KKKKRCSEGH 10 Unmodified _KKKKRCSEGH_ 0 0 0 nc|ENSG00000126785|Q9H4E5-2|RHOJ;ENSG00000126785|ENST00000316754|RHOJ nc|ENSG00000126785|Q9H4E5-2|RHOJ nc|ENSG00000126785|Q9H4E5-2|RHOJ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 401.35357666015625 3 400.892513 1199.65571 NaN NaN NaN NaN NaN NaN NaN 9.3795 1 8.3448 7.8448 8.8448 -1.0347 0 0 0 2.8426 1 953 953 0.043787 0 1 23259 3446 15336 15341 23082 23082 0.06386772879682212 KKKKRKLAP 9 Unmodified _KKKKRKLAP_ 0 0 0 REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 548.886474609375 2 548.887493 1095.76043 NaN NaN NaN NaN NaN NaN NaN 166.87 1 161.97 161.47 162.47 -4.8916 0 0 0 0.23508 1 32744 32744 2.0598 1.4583 1 + 23260 14893 15337 15342 23083 23083 0.21638262418559862 KKKKRRKMKLR 11 Unmodified _KKKKRRKMKLR_ 0 0 0 ENST00000492143.5_1_7:148514953-148515082:-|nuORF;ENST00000460911.5_1_7:148514453-148515082:-|nuORF ENST00000492143.5_1_7:148514953-148515082:-|nuORF ENST00000492143.5_1_7:148514953-148515082:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 750.5576782226562 2 750.511389 1499.00822 NaN NaN NaN NaN NaN NaN NaN 171.26 1 166.47 165.97 166.97 -4.7898 0 0 0 0.23698 1 34809 34809 0 0 1 23261 10063 15338 15343 23084 23084 0.27868068014686287 KKKKVIVIPV 10 Unmodified _KKKKVIVIPV_ 0 0 0 VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant;ENSG00000110799|ENST00000261405|VWF VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3358764648438 2 576.415552 1150.81655 NaN NaN NaN NaN NaN NaN NaN 63.384 1 60.127 59.627 60.627 -3.2567 0 0 0 0.22588 1 11893 11893 0.40072 0 1 23262 2588 15339 15344 23085 23085 0.24717470535347275 KKKKVIVLILV 11 Unmodified _KKKKVIVLILV_ 0 0 0 REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 641.1383666992188 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 168.99 1 168.99 168.49 169.49 0 0 0 0 0.22632 1 34661 34661 0.094841 0.094841 1 + 23263 21231 15340 15345 23086 23086 0.30314574666363114 KKKKYIQKLEK 11 Unmodified _KKKKYIQKLEK_ 0 0 0 REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|42|2|sense REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|42|2|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7267761230469 3 478.644933 1432.91297 NaN NaN NaN NaN NaN NaN NaN 161.51 1 156.37 155.87 156.87 -5.1438 0 0 0 0.22632 1 31370 31370 0.50596 0.50596 1 + 23264 23764 15341 15346 23087 23087 0.21382993304632691 KKKLKEMK 8 Unmodified _KKKLKEMK_ 0 0 0 nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-2|PPP1R9A nc|ENSG00000158528|Q9ULJ8|PPP1R9A nc|ENSG00000158528|Q9ULJ8|PPP1R9A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 516.8324584960938 2 516.833537 1031.65252 NaN NaN NaN NaN NaN NaN NaN 165.54 1 165.54 165.04 166.04 0 0 0 0 0.23182 1 33608 33608 0.68139 0 1 23265 5170 15342 15347 23088 23088 0.13796129772981658 KKKLLIQY 8 Unmodified _KKKLLIQY_ 0 0 0 REV__TRIM25|p.S361Vfs*20|1|0.13|ENSG00000121060|chr17:56901426-56901426|G/-|frameshift_variant REV__TRIM25|p.S361Vfs*20|1|0.13|ENSG00000121060|chr17:56901426-56901426|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.23675537109375 3 345.23046 1032.66955 NaN NaN NaN NaN NaN NaN NaN 37.726 1 35.258 34.758 35.758 -2.4688 0 0 0 0.21486 1 6974 6974 0.45834 0 1 + 23266 15643 15343 15348 23089 23089 0.15452373650441587 KKKLLKKSA 9 Unmodified _KKKLLKKSA_ 0 0 0 REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2684326171875 2 522.368601 1042.72265 NaN NaN NaN NaN NaN NaN NaN 119.04 1 114.41 113.91 114.91 -4.6334 0 0 0 0.19631 1 22841 22841 0.20686 0 1 + 23267 14358 15344 15349 23090 23090 0.2029975143309457 KKKLLKKSA 9 Unmodified _KKKLLKKSA_ 0 0 0 REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.261962890625 2 522.368601 1042.72265 NaN NaN NaN NaN NaN NaN NaN 149.06 1 144 143.5 144.5 -5.0595 0 0 0 0.19635 1 28879 28879 0.0033805 0 1 + 23268 14358 15344 15349 23091 23091 0.2029975143309457 KKKLLKKSA 9 Unmodified _KKKLLKKSA_ 0 0 0 REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2744750976562 2 522.368601 1042.72265 NaN NaN NaN NaN NaN NaN NaN 149.09 1 144.03 143.53 144.53 -5.0595 0 0 0 0.19635 1 28884 28884 0.0033805 0 1 + 23269 14358 15344 15349 23092 23092 0.2029975143309457 KKKLLSLLIL 10 Unmodified _KKKLLSLLIL_ 0 0 0 tr|U7T5Y4|U7T5Y4_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00017PE=3SV=1 tr|U7T5Y4|U7T5Y4_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00017PE=3SV=1 tr|U7T5Y4|U7T5Y4_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00017PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 390.2846984863281 3 390.284565 1167.83187 NaN NaN NaN NaN NaN NaN NaN 173.34 1 168.55 168.05 169.05 -4.7898 0 0 0 0.22588 1 35352 35352 0 0 1 23270 26479 15345 15350 23093 23093 0.2546633733259114 KKKLRFLL 8 Unmodified _KKKLRFLL_ 0 0 0 REV__ENSG00000134744|ENST00000257177|TUT4 REV__ENSG00000134744|ENST00000257177|TUT4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6884765625 2 523.365862 1044.71717 0.39659 0.00020756 2.7612 0.0014451 3.1578 0.0016527 523.8687089323706 149.35 0.10425 144.23 144.14 144.25 -5.1204 4 2 2 0 0 0 0.89967 1 28927 28927 0.0082765 0 1 2259400 + 23271 16224 15346 15351 23094 23094 0.196600726412953 KKKLRHNQK 9 Unmodified _KKKLRHNQK_ 0 0 0 ENST00000533296.5_1_6:130536401-130536509:-|nuORF ENST00000533296.5_1_6:130536401-130536509:-|nuORF ENST00000533296.5_1_6:130536401-130536509:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2696533203125 2 590.375281 1178.73601 NaN NaN NaN NaN NaN NaN NaN 173.55 1 173.55 173.05 174.05 0 0 0 0 0.23508 1 35893 35893 3.5965 0.31518 1 23272 10992 15347 15352 23095 23095 0.15379002265035524 KKKLRRGRGKQ 11 Unmodified _KKKLRRGRGKQ_ 0 0 0 ENST00000596623.2_2_19:53420656-53421197:-|nuORF ENST00000596623.2_2_19:53420656-53421197:-|nuORF ENST00000596623.2_2_19:53420656-53421197:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 452.29925537109375 3 452.300383 1353.87932 NaN NaN NaN NaN NaN NaN NaN 176.41 1 171.62 171.12 172.12 -4.7898 0 0 0 0.23698 1 36072 36072 0.094841 0 1 23273 11669 15348 15353 23096 23096 0.21653429376124222 KKKLSLTKKTI 11 Unmodified _KKKLSLTKKTI_ 0 0 0 REV__ENSG00000147082|ENST00000376042|CCNB3 REV__ENSG00000147082|ENST00000376042|CCNB3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 644.4591064453125 2 644.439755 1286.86496 NaN NaN NaN NaN NaN NaN NaN 169.21 1 164.42 163.92 164.92 -4.7898 0 0 0 0.22632 1 34264 34264 0.094841 0 1 + 23274 16918 15349 15354 23097 23097 0.23299919384612622 KKKLVGIIS 9 Unmodified _KKKLVGIIS_ 0 0 0 tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1 tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1 tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 329.2519226074219 3 329.23046 984.669552 NaN NaN NaN NaN NaN NaN NaN 176.02 1 171.23 170.73 171.73 -4.7898 0 0 0 0.23508 1 35990 35990 0 0 1 23275 26363 15350 15355 23098 23098 0.17660373650437577 KKKMKMKKL 9 Unmodified _KKKMKMKKL_ 0 0 0 REV__ENST00000553612.5_1_14:81651936-81658969:-|nuORF REV__ENST00000553612.5_1_14:81651936-81658969:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.8255310058594 3 388.255735 1161.74538 NaN NaN NaN NaN NaN NaN NaN 97.922 1 94.003 93.503 94.503 -3.9194 0 0 0 0.1963 1 18795 18795 0 0 1 + 23276 22965 15351 15356 23099 23099 0.17097311234692825 KKKPRRGRKPK 11 Unmodified _KKKPRRGRKPK_ 0 0 0 nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15 nc|ENSG00000141956|P57071-6|PRDM15 nc|ENSG00000141956|P57071-6|PRDM15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2327880859375 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 98.749 1 94.616 94.116 95.116 -4.1326 0 0 0 0.22632 1 19391 19391 0.026206 0.026206 1 23277 4400 15352 15357 23100 23100 0.2418630627280436 KKKQIKRKLKK 11 Unmodified _KKKQIKRKLKK_ 0 0 0 REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 713.5382080078125 2 713.508838 1425.00312 NaN NaN NaN NaN NaN NaN NaN 171.43 1 166.51 166.01 167.01 -4.9149 0 0 0 0.23698 1 33949 33949 0 0 1 + 23278 25497 15353 15358 23101 23101 0.3076208742370454 KKKRCKYK 8 Unmodified _KKKRCKYK_ 0 0 0 ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO ENSG00000094975|ENST00000263688|SUCO ENSG00000094975|ENST00000263688|SUCO MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2647705078125 2 541.336778 1080.659 NaN NaN NaN NaN NaN NaN NaN 175.73 1 175.73 175.23 176.23 0 0 0 0 0.2396 1 36404 36404 0.063987 0 1 23279 1849 15354 15359 23102 23102 0.12190067724327491 KKKRRGGQE 9 Unmodified _KKKRRGGQE_ 0 0 0 REV__ENST00000414320.1_3_2:206927768-206950680:-|nuORF REV__ENST00000414320.1_3_2:206927768-206950680:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.783447265625 2 543.828163 1085.64177 NaN NaN NaN NaN NaN NaN NaN 9.9822 1 8.9158 8.4158 9.4158 -1.0664 0 0 0 0.23508 1 1053 1053 0.45834 0.10771 1 + 23280 21444 15355 15360 23103 23103 0.10237863442898743 KKKRRITIKA 10 Unmodified _KKKRRITIKA_ 0 0 0 REV__nc|ENSG00000104067|Q07157-2|TJP1 REV__nc|ENSG00000104067|Q07157-2|TJP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 621.13037109375 2 621.430056 1240.84556 0.40828 0.00025372 1.5247 0.00094747 1.9329 0.0012012 621.4301013616823 165.63 0.1714 165.63 165.49 165.66 0 5 4 2 0 0 0 0.91149 1 33627 33627 3.5965 0 1 16839000 + 23281 14903 15356 15361 23104 23104 0.23477007884366685 KKKRRRRKKKA 11 Unmodified _KKKRRRRKKKA_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3855590820312 2 742.018227 1482.0219 NaN NaN NaN NaN NaN NaN NaN 173.77 1 168.98 168.48 169.48 -4.7898 0 0 0 0.22632 1 35469 35469 0.00056442 0 1 23282 1613 15357 15362 23105 23105 0.30017061838134396 KKKRRRRKKKA 11 Unmodified _KKKRRRRKKKA_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3855590820312 2 742.018227 1482.0219 NaN NaN NaN NaN NaN NaN NaN 173.78 1 168.99 168.49 169.49 -4.7898 0 0 0 0.23698 1 35471 35471 0 0 1 23283 1613 15357 15362 23106 23106 0.30017061838134396 KKKSKHRNK 9 Unmodified _KKKSKHRNK_ 0 0 0 REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 385.2494201660156 3 385.247396 1152.72036 NaN NaN NaN NaN NaN NaN NaN 175.67 1 170.88 170.38 171.38 -4.7898 0 0 0 0.23508 1 35919 35919 1.0715 0 1 + 23284 22078 15358 15363 23107 23107 0.1501071574798516 KKKSKISASRK 11 Unmodified _KKKSKISASRK_ 0 0 0 ENST00000587176.5_1_19:55666069-55669122:-|nuORF;ENSG00000129991|ENST00000344887|TNNI3 ENST00000587176.5_1_19:55666069-55669122:-|nuORF ENST00000587176.5_1_19:55666069-55669122:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7659912109375 2 630.909153 1259.80375 NaN NaN NaN NaN NaN NaN NaN 150.54 1 145.34 144.84 145.84 -5.1994 0 0 0 0.22632 1 29174 29174 0.11104 0 1 23285 3576 15359 15364 23108 23108 0.18424407405154852 KKKSKTKTG 9 Unmodified _KKKSKTKTG_ 0 0 0 REV__ENST00000514482.1_1_4:190862182-190882061:+|nuORF REV__ENST00000514482.1_1_4:190862182-190882061:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 335.903564453125 3 335.885353 1004.63423 NaN NaN NaN NaN NaN NaN NaN 9.2022 1 8.4079 7.9079 8.9079 -0.79424 0 0 0 0.23508 1 1042 1042 0 0 1 + 23286 15166 15360 15365 23109 23109 0.1320971112263578 KKKSLILL 8 Unmodified _KKKSLILL_ 0 0 0 ENST00000266126.9_1_14:75475951-75476050:+|nuORF ENST00000266126.9_1_14:75475951-75476050:+|nuORF ENST00000266126.9_1_14:75475951-75476050:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.86395263671875 3 314.895189 941.663738 NaN NaN NaN NaN NaN NaN NaN 9.8511 1 9.0568 8.5568 9.5568 -0.79424 0 0 0 0.21486 1 1177 1177 0 0 1 23287 8372 15361 15366 23110 23110 0.19057275138766272 KKKVKEVSES 10 Unmodified _KKKVKEVSES_ 0 0 0 ENSG00000087206|ENST00000511320|UIMC1;nc|ENSG00000087206|Q96RL1-5|UIMC1;ENST00000417486.6_1_5:176397643-176409616:-|nuORF;nc|ENSG00000087206|Q96RL1-2|UIMC1 ENSG00000087206|ENST00000511320|UIMC1 ENSG00000087206|ENST00000511320|UIMC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.70941162109375 3 387.899439 1160.67649 0.074696 2.8975E-05 0.29128 0.00011299 0.36598 0.00014196 388.23366254427583 58.774 0.59888 55.522 55.241 55.839 -3.2517 27 16 2 0 0 0 0.91149 1 10876 10876 3.0723 0.57378 1 610950 23288 1708 15362 15367 23111 23111 0.10257641740349754 KKKVKEVSES 10 Unmodified _KKKVKEVSES_ 0 0 0 ENSG00000087206|ENST00000511320|UIMC1;nc|ENSG00000087206|Q96RL1-5|UIMC1;ENST00000417486.6_1_5:176397643-176409616:-|nuORF;nc|ENSG00000087206|Q96RL1-2|UIMC1 ENSG00000087206|ENST00000511320|UIMC1 ENSG00000087206|ENST00000511320|UIMC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 387.899439 1160.67649 -0.23526 -9.1259E-05 0.46395 0.00017997 0.22869 8.8709E-05 387.8999425678879 55.689 1.3789 55.689 55.158 56.536 0 0.081847 9.3313E-05 NaN 3.0723 48 38 2 NaN NaN NaN NaN 0 NaN NaN 0 1026700 23289 1708 15362 15367 0.10257641740349754 KKKVKEVSES 10 Unmodified _KKKVKEVSES_ 0 0 0 ENSG00000087206|ENST00000511320|UIMC1;nc|ENSG00000087206|Q96RL1-5|UIMC1;ENST00000417486.6_1_5:176397643-176409616:-|nuORF;nc|ENSG00000087206|Q96RL1-2|UIMC1 ENSG00000087206|ENST00000511320|UIMC1 ENSG00000087206|ENST00000511320|UIMC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 387.899439 1160.67649 -0.28979 -0.00011241 0.18372 7.1265E-05 -0.10607 -4.1144E-05 388.2334183261422 58.503 0.90797 55.593 55.168 56.076 -2.9105 -0.014864 -0.00023279 NaN 3.0723 34 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1030200 23290 1708 15362 15367 0.10257641740349754 KKKVKEVSES 10 Unmodified _KKKVKEVSES_ 0 0 0 ENSG00000087206|ENST00000511320|UIMC1;nc|ENSG00000087206|Q96RL1-5|UIMC1;ENST00000417486.6_1_5:176397643-176409616:-|nuORF;nc|ENSG00000087206|Q96RL1-2|UIMC1 ENSG00000087206|ENST00000511320|UIMC1 ENSG00000087206|ENST00000511320|UIMC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 387.899439 1160.67649 -0.53955 -0.00020929 0.55808 0.00021648 0.018524 7.1853E-06 387.8999247679817 58.831 1.0403 55.626 55.026 56.066 -3.2052 0.01869 0.00020284 NaN 3.0723 40 29 2 NaN NaN NaN NaN 0 NaN NaN 0 863880 23291 1708 15362 15367 0.10257641740349754 KKKVPRRVIH 10 Unmodified _KKKVPRRVIH_ 0 0 0 nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1 nc|ENSG00000151327|Q8N128|FAM177A1 nc|ENSG00000151327|Q8N128|FAM177A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7601318359375 2 630.922398 1259.83024 NaN NaN NaN NaN NaN NaN NaN 175.84 1 175.84 175.34 176.34 0 0 0 0 0.22588 1 36427 36427 0.40072 0.1317 1 23292 4859 15363 15368 23112 23112 0.21072141087188356 KKKYEDEINKR 11 Unmodified _KKKYEDEINKR_ 0 0 0 KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546 KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant;ENSG00000186442|ENST00000417996|KRT3 KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.52484130859375 4 363.455771 1449.79398 -0.66408 -0.00024136 0.51354 0.00018665 -0.15054 -5.4714E-05 363.45597078188763 14.018 0.10677 12.845 12.756 12.862 -1.173 6 2 3 0 0 0 0.88733 1 1862 1862 5.4027 4.8968 1 259580 + 23293 673;663 15364 15369 23113 23113 0.08707174609116919 KKKYEDEINKR 11 Unmodified _KKKYEDEINKR_ 0 0 0 KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546 KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant;ENSG00000186442|ENST00000417996|KRT3 KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 363.455771 1449.79398 -0.9106 -0.00033096 0.87101 0.00031657 -0.039597 -1.4392E-05 363.4561343612427 14.03 0.14242 12.916 12.803 12.945 -1.1142 0.035564 0.00022951 NaN 5.4027 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 184080 + 23294 673;663 15364 15369 0.08707174609116919 KKKYMRLQ 8 Unmodified _KKKYMRLQ_ 0 0 0 REV__nc|ENSG00000188895|Q68DK7-3|MSL1 REV__nc|ENSG00000188895|Q68DK7-3|MSL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.784912109375 2 547.828786 1093.64302 NaN NaN NaN NaN NaN NaN NaN 157.71 1 157.71 157.21 158.21 0 0 0 0 0.23749 1 31660 31660 0.12286 0 1 + 23295 19177 15365 15370 23114 23114 0.0999436148742916 KKKYTKMVKLL 11 Unmodified _KKKYTKMVKLL_ 0 0 0 nc|ENSG00000131507|Q9BT67-2|NDFIP1 nc|ENSG00000131507|Q9BT67-2|NDFIP1 nc|ENSG00000131507|Q9BT67-2|NDFIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.1263427734375 4 345.72563 1378.87341 -0.38565 -0.00013333 -1.1845 -0.0004095 -1.5701 -0.00054283 345.7251322734872 96.546 0.68949 96.546 96.116 96.805 0 29 19 2 0 0 0 0.96227 1 18877 18877 0.094841 0 1 1460000 23296 12323 15366 15371 23115 23115 0.1991315002956071 KKKYTKMVKLL 11 Unmodified _KKKYTKMVKLL_ 0 0 0 nc|ENSG00000131507|Q9BT67-2|NDFIP1 nc|ENSG00000131507|Q9BT67-2|NDFIP1 nc|ENSG00000131507|Q9BT67-2|NDFIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 345.72563 1378.87341 -0.25352 -8.765E-05 -1.5293 -0.00052871 -1.7828 -0.00061636 345.9758903107835 100.85 0.4106 96.691 96.391 96.802 -4.1594 0.07267 -0.00029584 NaN 0.094841 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2320000 23297 12323 15366 15371 0.1991315002956071 KKLDKVLKN 9 Unmodified _KKLDKVLKN_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7930297851562 2 543.355691 1084.69683 NaN NaN NaN NaN NaN NaN NaN 12.337 1 11.208 10.708 11.708 -1.1293 0 0 0 0.23508 1 1504 1504 1.8442 0 1 23298 4896 15367 15372 23116 23116 0.1578685719080113 KKLKCSVLQP 10 Unmodified _KKLKCSVLQP_ 0 0 0 ENST00000502262.4_1_5:96158677-96209374:-|nuORF ENST00000502262.4_1_5:96158677-96209374:-|nuORF ENST00000502262.4_1_5:96158677-96209374:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 572.3141479492188 2 572.349551 1142.68455 0.50062 0.00028653 1.7437 0.000998 2.2443 0.0012845 572.3522904933855 165.45 0.1676 160.51 160.39 160.56 -4.9484 5 4 2 0 0 0 0.87854 1 32327 32327 5.7319 0 1 4439700 23299 10622 15368 15373 23117 23117 0.11891497456099387 KKLKKKLCRK 10 Unmodified _KKLKKKLCRK_ 0 0 0 REV__ENST00000282382.8_2_5:114916706-114916865:-|nuORF REV__ENST00000282382.8_2_5:114916706-114916865:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 637.0482788085938 2 636.93666 1271.85877 NaN NaN NaN NaN NaN NaN NaN 162.04 1 162.04 161.54 162.54 0 0 0 0 2.8426 1 32556 32556 0.69767 0 1 + 23300 20311 15369 15374 23118 23118 0.23371122672074307 KKLKLQFRVR 10 Unmodified _KKLKLQFRVR_ 0 0 0 REV__ENST00000204566.6_1_15:65257719-65261593:-|nuORF REV__ENST00000204566.6_1_15:65257719-65261593:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 658.4365234375 2 658.437881 1314.86121 NaN NaN NaN NaN NaN NaN NaN 169.75 1 164.88 164.38 165.38 -4.873 0 0 0 2.8426 1 33550 33550 1.9064 1.905 1 + 23301 19994 15370 15375 23119 23119 0.21637294401375584 KKLLALFLV 9 Unmodified _KKLLALFLV_ 0 0 0 tr|U7T590|U7T590_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00485PE=4SV=1 tr|U7T590|U7T590_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00485PE=4SV=1 tr|U7T590|U7T590_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00485PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 348.92071533203125 3 348.910839 1043.71069 NaN NaN NaN NaN NaN NaN NaN 10.029 1 8.9351 8.4351 9.4351 -1.0936 0 0 0 0.23508 1 1113 1113 0 0 1 23302 26457 15371 15376 23120 23120 0.19058134689862527 KKLLILPLIIL 11 Unmodified _KKLLILPLIIL_ 0 0 0 tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1 tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1 tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 426.31414794921875 3 426.315865 1275.92577 NaN NaN NaN NaN NaN NaN NaN 174.35 1 174.35 173.85 174.85 0 0 0 0 0.23698 1 36089 36089 0.094841 0.094841 1 23303 26263 15372 15377 23121 23121 0.2988405643486658 KKLLSPAPR 9 Unmodified _KKLLSPAPR_ 0 0 0 REV__ENST00000508837.1_1_5:169015420-169015759:+|nuORF REV__ENST00000508837.1_1_5:169015420-169015759:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.2117919921875 3 337.222076 1008.6444 NaN NaN NaN NaN NaN NaN NaN 58.067 1 54.862 54.362 55.362 -3.2052 0 0 0 0.19622 1 10830 10830 0.96228 0.83941 1 + 23304 22520 15373 15378 23122 23122 0.14042318847839397 KKLMFAPML 9 Unmodified _KKLMFAPML_ 0 0 0 REV__SPG21|p.I163*|1|0.31|ENSG00000090487|chr15:64970188-64970188|T/-|frameshift_variant REV__SPG21|p.I163*|1|0.31|ENSG00000090487|chr15:64970188-64970188|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2100524902344 3 360.209903 1077.60788 NaN NaN NaN NaN NaN NaN NaN 101.08 1 97.094 96.594 97.594 -3.9895 0 0 0 0.19638 1 19427 19427 0.073264 0 1 + 23305 14548 15374 15379 23123 23123 0.07217982635279441 KKLPVIIIY 9 Unmodified _KKLPVIIIY_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7813110351562 2 543.867903 1085.72125 NaN NaN NaN NaN NaN NaN NaN 74.388 1 70.794 70.294 71.294 -3.594 0 0 0 0.23508 1 14128 14128 2.3027 0.65011 1 + 23306 17153 15375 15380 23124 23124 0.18182117344326798 KKLQNQKRH 9 Unmodified _KKLQNQKRH_ 0 0 0 nc|ENSG00000140798|Q96J65-5|ABCC12;nc|ENSG00000140798|Q96J65-3|ABCC12;nc|ENSG00000140798|Q96J65-2|ABCC12;ABCC12|p.M936Yfs*84|1|0.32|ENSG00000140798|chr16:48104236-48104237|-/A|frameshift_variant;ABCC12|p.R1075Cfs*54|1|0.38|ENSG00000140798|chr16:48091182-48091183|-/CA|frameshift_variant;nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12;nc|ENSG00000140798|Q96J65-4|ABCC12 nc|ENSG00000140798|Q96J65-5|ABCC12 nc|ENSG00000140798|Q96J65-5|ABCC12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2568969726562 2 590.357088 1178.69962 NaN NaN NaN NaN NaN NaN NaN 118.35 1 118.35 117.85 118.85 0 0 0 0 0.19626 1 23310 23310 0.029283 0.025902 1 23307 16 15376 15381 23125 23125 0.11742125368300549 KKMKKIIGV 9 Unmodified _KKMKKIIGV_ 0 0 0 REV__NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant REV__NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.9091491699219 3 348.903579 1043.68891 NaN NaN NaN NaN NaN NaN NaN 9.3101 1 8.5158 8.0158 9.0158 -0.79424 0 0 0 0.23508 1 1064 1064 0 0 1 + 23308 23919 15377 15382 23126 23126 0.16881006669700582 KKMRRRRKRRP 11 Unmodified _KKMRRRRKRRP_ 0 0 0 ENST00000300811.7_1_19:44112133-44118443:-|nuORF ENST00000300811.7_1_19:44112133-44118443:-|nuORF ENST00000300811.7_1_19:44112133-44118443:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6925659179688 3 523.339066 1566.99537 0.19251 0.00010075 2.8591 0.0014963 3.0516 0.001597 523.6757110844484 145.94 0.17474 145.94 145.8 145.98 0 6 4 2 0 0 0 0.66298 1 29184 29184 0.094841 0.094841 1 1698000 23309 8550 15378 15383 23127 23127 0.2345504967515808 KKNNGIYEL 9 Unmodified _KKNNGIYEL_ 0 0 0 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 102.45 1 98.263 97.763 98.763 -4.1861 0 0 0 0.23508 1 20135 20135 7.609 0.88579 1 + 23310 25229 15379 15384 23128 23128 0.0461712798901317 KKNNGIYEL 9 Unmodified _KKNNGIYEL_ 0 0 0 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 103.22 1 99.037 98.537 99.537 -4.1861 0 0 0 0.23508 1 20291 20291 4.5289 0.33936 1 + 23311 25229 15379 15384 23129 23129 0.0461712798901317 KKNNGIYEL 9 Unmodified _KKNNGIYEL_ 0 0 0 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 REV__tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 104.71 1 100.66 100.16 101.16 -4.0543 0 0 0 0.23508 1 20138 20138 7.609 0.50723 1 + 23312 25229 15379 15384 23130 23130 0.0461712798901317 KKNRPEAFKQ 10 Unmodified _KKNRPEAFKQ_ 0 0 0 REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14 REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.763427734375 2 623.356754 1244.69895 0.88884 0.00055407 -1.1925 -0.00074335 -0.30365 -0.00018928 623.3553634599934 69.136 0.17587 65.956 65.833 66.009 -3.1796 6 4 2 0 0 0 0.89145 1 13433 13433 4.897 1.9018 1 947290 + 23313 16258 15380 15385 23131 23131 0.08639285928597928 KKNWRRRKRR 10 Unmodified _KKNWRRRKRR_ 0 0 0 nc|ENSG00000137309|P17096-3|HMGA1 nc|ENSG00000137309|P17096-3|HMGA1 nc|ENSG00000137309|P17096-3|HMGA1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3997192382812 2 742.468901 1482.92325 NaN NaN NaN NaN NaN NaN NaN 163.88 1 159.09 158.59 159.59 -4.7898 0 0 0 0.22588 1 32702 32702 0.40072 0 1 23314 12345 15381 15386 23132 23132 0.20110458593057956 KKNYKHWRDSW 11 Unmodified _KKNYKHWRDSW_ 0 0 0 ENSG00000171103|ENST00000306108|TRMT61B ENSG00000171103|ENST00000306108|TRMT61B ENSG00000171103|ENST00000306108|TRMT61B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 516.4530639648438 3 516.600386 1546.77933 NaN NaN NaN NaN NaN NaN NaN 160.6 1 155.37 154.87 155.87 -5.2299 0 0 0 0.22632 1 31188 31188 1.4551 0.94916 1 23315 6122 15382 15387 23133 23133 0.027811472516305003 KKPASPQVVK 10 Unmodified _KKPASPQVVK_ 0 0 0 GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant;ENSG00000185477|ENST00000609438|GPRIN3 GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant GPRIN3|p.Q666Afs*23|1|0.42|ENSG00000185477|chr4:89248116-89248117|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2702026367188 2 541.340041 1080.66553 NaN NaN NaN NaN NaN NaN NaN 162.29 1 162.29 161.79 162.79 0 0 0 0 2.8426 1 32620 32620 3.5927 0.71001 1 23316 6993 15383 15388 23134 23134 0.1284228415670441 KKPETPAAKVP 11 Unmodified _KKPETPAAKVP_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 583.5587158203125 2 583.350606 1164.68666 NaN NaN NaN NaN NaN NaN NaN 165.67 1 165.67 165.17 166.17 0 0 0 0 0.22632 1 33650 33650 0.65807 0.56323 1 23317 5053;26536 15384 15389 23135 23135 0.11090249465542001 KKPFSNTEK 9 Unmodified _KKPFSNTEK_ 0 0 0 ENSG00000150667|ENST00000350221|FSIP1 ENSG00000150667|ENST00000350221|FSIP1 ENSG00000150667|ENST00000350221|FSIP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2012023925781 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 67.192 1 63.866 63.366 64.366 -3.3268 0 0 0 0.23508 1 12665 12665 7.1017 2.3858 1 23318 4832 15385 15390 23136 23136 0.0461712798901317 KKPKEYLI 8 Unmodified _KKPKEYLI_ 0 0 0 ENST00000490493.1_1_7:105207903-105231821:-|nuORF;ENST00000469099.5_1_7:105205851-105231821:-|nuORF ENST00000490493.1_1_7:105207903-105231821:-|nuORF ENST00000490493.1_1_7:105207903-105231821:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 509.6670227050781 2 509.81841 1017.62227 0.21051 0.00010732 0.013871 7.0716E-06 0.22438 0.00011439 509.81837547319066 163.05 0.48981 163.05 162.8 163.29 0 30 13 3 0 0 0 0.98792 1 32770 32770 5.2307 0 1 21453000 23319 10176 15386 15391 23137 23137 0.11416094379421793 KKPKKKFTI 9 Unmodified _KKPKKKFTI_ 0 0 0 ENST00000371485.7_1_10:95276799-95276850:+|nuORF ENST00000371485.7_1_10:95276799-95276850:+|nuORF ENST00000371485.7_1_10:95276799-95276850:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 559.5070190429688 2 559.376426 1116.7383 NaN NaN NaN NaN NaN NaN NaN 174.14 1 169.35 168.85 169.85 -4.7898 0 0 0 0.23508 1 35562 35562 1.8442 0 1 23320 9160 15387 15392 23138 23138 0.18460037950148944 KKPKKPLPR 9 Unmodified _KKPKKPLPR_ 0 0 0 REV__ENST00000477676.6_1_1:154947554-154951250:+|nuORF REV__ENST00000477676.6_1_1:154947554-154951250:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 546.3740234375 2 546.374218 1090.73388 NaN NaN NaN NaN NaN NaN NaN 173.01 1 173.01 172.51 173.51 0 0 0 0 0.23508 1 35752 35752 1.6526 0 1 + 23321 18335 15388 15393 23139 23139 0.19214573527210632 KKPKPSPSLL 10 Unmodified _KKPKPSPSLL_ 0 0 0 REV__ENSG00000053918|ENST00000155840|KCNQ1 REV__ENSG00000053918|ENST00000155840|KCNQ1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7845458984375 2 547.850242 1093.68593 NaN NaN NaN NaN NaN NaN NaN 152.46 1 152.46 151.96 152.96 0 0 0 0 2.8426 1 30536 30536 1.9275 1.3007 1 + 23322 14100 15389 15394 23140 23140 0.14283454816518315 KKQRLRSY 8 Unmodified _KKQRLRSY_ 0 0 0 REV__ENST00000492914.1_1_10:51829421-51840545:+|nuORF REV__ENST00000492914.1_1_10:51829421-51840545:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 3 360.220847 1077.64071 NaN NaN NaN NaN NaN NaN NaN 85.656 1 81.992 81.492 82.492 -3.6641 0 0 0 0.21486 1 16744 16744 3.9444 1.4459 1 + 23323 22339 15390 15395 23141 23141 0.10499649073994988 KKQRQRRERRK 11 Unmodified _KKQRQRRERRK_ 0 0 0 TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant;nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20 TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.392333984375 2 784.987655 1567.96076 NaN NaN NaN NaN NaN NaN NaN 168.33 1 163.54 163.04 164.04 -4.7898 0 0 0 0.22632 1 34018 34018 0.026206 0.026206 1 23324 25826 15391 15396 23142 23142 0.1994950506805253 KKRFEEEL 8 Unmodified _KKRFEEEL_ 0 0 0 nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2;ADCY2|p.R914Sfs*9|1|0.46|ENSG00000078295|chr5:7802326-7802327|-/T|frameshift_variant nc|ENSG00000078295|Q08462-2|ADCY2 nc|ENSG00000078295|Q08462-2|ADCY2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 103.45 1 99.394 98.894 99.894 -4.0543 0 0 0 0.21486 1 19890 19890 3.5965 0 1 23325 1576 15392 15397 23143 23143 0.0461712798901317 KKRIFFLIIL 10 Unmodified _KKRIFFLIIL_ 0 0 0 REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.16754150390625 4 323.471964 1289.85875 -0.15959 -5.1624E-05 1.1888 0.00038456 1.0292 0.00033293 323.47224817784354 81.454 0.76566 81.454 81.197 81.963 0 41 21 3 0 0 0 0.91149 1 15940 15940 0 0 1 2382700 + 23326 24996 15393 15398 23144 23144 0.22541445943761573 KKRIKRRALL 10 Unmodified _KKRIKRRALL_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ;PKDREJ|p.F1710L|1|0.31|ENSG00000130943|chr22:46258195-46258195|A/G|missense_variant;PKDREJ|p.P1887Qfs*10|2|0.18|ENSG00000130943|chr22:46257665-46257665|A/-|frameshift_variant ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 641.4706420898438 2 641.451323 1280.88809 NaN NaN NaN NaN NaN NaN NaN 167.08 1 162.29 161.79 162.79 -4.7898 0 0 0 0.22588 1 33651 33651 0.40072 0 1 23327 3651 15394 15399 23145 23145 0.25888403012618255 KKRIQLYEFFP 11 Unmodified _KKRIQLYEFFP_ 0 0 0 REV__ANKRD11|p.Y2438F|1|0.3|ENSG00000167522|chr16:89279229-89279229|T/A|missense_variant REV__ANKRD11|p.Y2438F|1|0.3|ENSG00000167522|chr16:89279229-89279229|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2585754394531 3 490.281883 1467.82382 NaN NaN NaN NaN NaN NaN NaN 151.45 1 146.28 145.78 146.78 -5.1759 0 0 0 0.22632 1 29354 29354 0.0059557 0 1 + 23328 13053 15395 15400 23146 23146 0.10862158345116768 KKRKEKRLKRL 11 Unmodified _KKRKEKRLKRL_ 0 0 0 DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant;DSCAML1|p.P2046Qfs*45|1|0.5|ENSG00000177103|chr11:117428533-117428533|G/-|frameshift_variant;ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1 DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.375244140625 2 742.006993 1481.99943 NaN NaN NaN NaN NaN NaN NaN 165.78 1 160.83 160.33 161.33 -4.9484 0 0 0 0.23698 1 32421 32421 0.30703 0.30703 1 23329 893 15396 15401 23147 23147 0.27771417649864816 KKRKEKRLKRL 11 Unmodified _KKRKEKRLKRL_ 0 0 0 DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant;DSCAML1|p.P2046Qfs*45|1|0.5|ENSG00000177103|chr11:117428533-117428533|G/-|frameshift_variant;ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1 DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.4039916992188 2 742.006993 1481.99943 NaN NaN NaN NaN NaN NaN NaN 165.84 1 160.89 160.39 161.39 -4.9484 0 0 0 0.23698 1 32439 32439 0.30703 0.30703 1 23330 893 15396 15401 23148 23148 0.27771417649864816 KKRKFVRKL 9 Unmodified _KKRKFVRKL_ 0 0 0 REV__ENSG00000203760|ENST00000368328|CENPW REV__ENSG00000203760|ENST00000368328|CENPW MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2890014648438 2 601.914042 1201.81353 1.0522 0.00063336 0.20228 0.00012175 1.2545 0.00075511 601.9138994613318 140.56 0.36282 135.91 135.69 136.05 -4.6493 12 7 2 0 0 0 0.65565 1 27756 27756 0 0 1 3559000 + 23331 19498 15397 15402 23149 23149 0.22069640201220864 KKRKFVRKL 9 Unmodified _KKRKFVRKL_ 0 0 0 REV__ENSG00000203760|ENST00000368328|CENPW REV__ENSG00000203760|ENST00000368328|CENPW MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2839965820312 2 601.914042 1201.81353 NaN NaN NaN NaN NaN NaN NaN 97.835 1 93.6 93.1 94.1 -4.2348 0 0 0 0.23508 1 18692 18692 0.52476 0.066424 1 + 23332 19498 15397 15402 23150 23150 0.22069640201220864 KKRKGQVIQF 10 Unmodified _KKRKGQVIQF_ 0 0 0 ENST00000493084.1_1_8:87029298-87029352:+|nuORF;ENST00000473882.1_1_11:25610023-25610134:-|nuORF;ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL ENST00000493084.1_1_8:87029298-87029352:+|nuORF ENST00000493084.1_1_8:87029298-87029352:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 309.1886291503906 4 308.696295 1230.75608 0.20556 6.3455E-05 -0.18043 -5.5698E-05 0.025126 7.7564E-06 308.696192193864 34.101 0.62235 31.954 31.634 32.256 -2.1468 39 17 3 0 0 0 0.029144 1 5971 5971 51.488 41.337 1 1898900 23333 5635 15398 15403 23151 23151 0.14992753204978726 KKRKGQVIQF 10 Unmodified _KKRKGQVIQF_ 0 0 0 ENST00000493084.1_1_8:87029298-87029352:+|nuORF;ENST00000473882.1_1_11:25610023-25610134:-|nuORF;ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL ENST00000493084.1_1_8:87029298-87029352:+|nuORF ENST00000493084.1_1_8:87029298-87029352:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 308.696295 1230.75608 -0.47099 -0.00014539 0.46851 0.00014463 -0.0024805 -7.6573E-07 308.6964214427009 32.17 0.55419 32.17 31.913 32.467 0 0.17507 0.00030977 NaN 51.488 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2261600 23334 5635 15398 15403 0.14992753204978726 KKRKGQVIQF 10 Unmodified _KKRKGQVIQF_ 0 0 0 ENST00000493084.1_1_8:87029298-87029352:+|nuORF;ENST00000473882.1_1_11:25610023-25610134:-|nuORF;ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL ENST00000493084.1_1_8:87029298-87029352:+|nuORF ENST00000493084.1_1_8:87029298-87029352:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 308.696295 1230.75608 -0.40159 -0.00012397 0.16243 5.0143E-05 -0.23916 -7.3826E-05 308.6963680963212 34.248 0.52185 31.931 31.596 32.118 -2.3175 -0.064456 -6.8168E-05 NaN 51.488 24 14 3 NaN NaN NaN NaN 0 NaN NaN 0 971020 23335 5635 15398 15403 0.14992753204978726 KKRKGQVIQF 10 Unmodified _KKRKGQVIQF_ 0 0 0 ENST00000493084.1_1_8:87029298-87029352:+|nuORF;ENST00000473882.1_1_11:25610023-25610134:-|nuORF;ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL ENST00000493084.1_1_8:87029298-87029352:+|nuORF ENST00000493084.1_1_8:87029298-87029352:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 308.696295 1230.75608 -0.31011 -9.5728E-05 0.47105 0.00014541 0.16094 4.9682E-05 308.69633816003073 34.142 0.45515 31.926 31.633 32.088 -2.2158 -0.06938 0.0003129 NaN 51.488 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 874720 23336 5635 15398 15403 0.14992753204978726 KKRKIIIF 8 Unmodified _KKRKIIIF_ 0 0 0 ENST00000310806.8_1_14:45673220-45673358:-|nuORF ENST00000310806.8_1_14:45673220-45673358:-|nuORF ENST00000310806.8_1_14:45673220-45673358:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6990966796875 2 523.365862 1044.71717 NaN NaN NaN NaN NaN NaN NaN 162.85 1 157.71 157.21 158.21 -5.1438 0 0 0 0.21486 1 31658 31658 0.69038 0 1 23337 8644 15399 15404 23152 23152 0.19660072641272563 KKRKKKGKS 9 Unmodified _KKRKKKGKS_ 0 0 0 REV__ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant REV__ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7960815429688 2 544.374749 1086.73495 0.33861 0.00018433 1.5871 0.00086397 1.9257 0.0010483 544.3734117198567 148.98 0.20558 148.98 148.89 149.1 0 6 5 2 0 0 0 0.88442 1 29808 29808 0.52476 0 1 719200 + 23338 13123 15400 15405 23153 23153 0.19504787896130438 KKRKKKKG 8 Unmodified _KKRKKKKG_ 0 0 0 REV__ENST00000519694.1_1_7:27208459-27208531:+|nuORF REV__ENST00000519694.1_1_7:27208459-27208531:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 500.6652526855469 2 500.858735 999.702918 NaN NaN NaN NaN NaN NaN NaN 162.58 1 157.79 157.29 158.29 -4.7898 0 0 0 0.21486 1 32357 32357 0.69038 0 1 + 23339 22621 15401 15406 23154 23154 0.20305420212991976 KKRKKKKKFK 10 Unmodified _KKRKKKKKFK_ 0 0 0 ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 673.9766845703125 2 673.977173 1345.93979 NaN NaN NaN NaN NaN NaN NaN 167.17 1 167.17 166.67 167.67 0 0 0 0 0.22588 1 34146 34146 0 0 1 23340 8121 15402 15407 23155 23155 0.2806614670646468 KKRKKKKKSFL 11 Unmodified _KKRKKKKKSFL_ 0 0 0 REV__ENST00000078429.8_1_19:3121173-3121524:+|nuORF REV__ENST00000078429.8_1_19:3121173-3121524:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 709.7633666992188 2 709.987738 1417.96092 NaN NaN NaN NaN NaN NaN NaN 167.66 1 162.77 162.27 163.27 -4.8916 0 0 0 0.23698 1 32999 32999 0.26902 0.26902 1 + 23341 19972 15403 15408 23156 23156 0.2686611201534106 KKRKMVKVY 9 Unmodified _KKRKMVKVY_ 0 0 0 nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2617797851562 2 590.373361 1178.73217 NaN NaN NaN NaN NaN NaN NaN 111.68 1 111.68 111.18 112.18 0 0 0 0 0.19624 1 21969 21969 0.073264 0.073264 1 23342 6378 15404 15409 23157 23157 0.14995196446966474 KKRKQERLLWV 11 Unmodified _KKRKQERLLWV_ 0 0 0 REV__ARFGEF2-SULF2|2|fusion REV__ARFGEF2-SULF2|2|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3853149414062 2 742.464627 1482.9147 NaN NaN NaN NaN NaN NaN NaN 144.71 1 144.71 144.21 145.21 0 0 0 0 0.22632 1 28918 28918 0.026206 0 1 + 23343 13092 15405 15410 23158 23158 0.1925604711325377 KKRKRGWKKRL 11 Unmodified _KKRKRGWKKRL_ 0 0 0 REV__ENST00000361720.9_1_1:27220846-27223967:-|nuORF REV__ENST00000361720.9_1_1:27220846-27223967:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3910522460938 2 742.494053 1482.97355 NaN NaN NaN NaN NaN NaN NaN 164.72 1 164.72 164.22 165.22 0 0 0 0 0.22632 1 33345 33345 0.00056442 0.00056442 1 + 23344 20889 15406 15411 23159 23159 0.2513856819823559 KKRKRKRIWNR 11 Unmodified _KKRKRKRIWNR_ 0 0 0 UTP23|p.R232W|1|0.1|ENSG00000147679|chr8:116771786-116771786|C/T|missense_variant UTP23|p.R232W|1|0.1|ENSG00000147679|chr8:116771786-116771786|C/T|missense_variant UTP23|p.R232W|1|0.1|ENSG00000147679|chr8:116771786-116771786|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6961669921875 3 523.674332 1568.00117 NaN NaN NaN NaN NaN NaN NaN 150.35 1 150.35 149.85 150.85 0 0 0 0 0.22632 1 30102 30102 0.026206 0.026206 1 23345 26565 15407 15412 23160 23160 0.23988471458505956 KKRKRRKKKRG 11 Unmodified _KKRKRRKKKRG_ 0 0 0 REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2579040527344 3 490.342693 1468.00625 NaN NaN NaN NaN NaN NaN NaN 159.58 1 154.79 154.29 155.29 -4.7952 0 0 0 0.22632 1 31728 31728 0.00056442 0.00056442 1 + 23346 15928 15408 15413 23161 23161 0.2909677532106798 KKRKYALPAK 10 Unmodified _KKRKYALPAK_ 0 0 0 REV__ENSG00000146576|ENST00000344417|INTS15 REV__ENSG00000146576|ENST00000344417|INTS15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2952270507812 2 601.890232 1201.76591 0.54315 0.00032692 -1.1232 -0.00067603 -0.58003 -0.00034911 602.3917671927912 165.23 0.20871 160.25 160.11 160.32 -4.9811 6 5 2 0 0 0 0.91149 1 32292 32292 1.1933 0 1 4084800 + 23347 16894 15409 15414 23162 23162 0.17309941210351099 KKRLAWEA 8 Unmodified _KKRLAWEA_ 0 0 0 ENST00000244745.3_2_6:21594329-21594497:+|nuORF ENST00000244745.3_2_6:21594329-21594497:+|nuORF ENST00000244745.3_2_6:21594329-21594497:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 501.7699279785156 2 501.298176 1000.5818 -0.52046 -0.0002609 -1.2222 -0.00061267 -1.7426 -0.00087358 501.2974027746946 108.26 0.51913 103.94 103.62 104.14 -4.32 22 14 2 0 0 0 0.88497 1 21324 21324 10.074 8.3317 1 1017400 23348 8202 15410 15415 23163 23163 0.08153172779657325 KKRLAWEA 8 Unmodified _KKRLAWEA_ 0 0 0 ENST00000244745.3_2_6:21594329-21594497:+|nuORF ENST00000244745.3_2_6:21594329-21594497:+|nuORF ENST00000244745.3_2_6:21594329-21594497:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 501.298176 1000.5818 0.54497 0.00027319 -1.7906 -0.00089764 -1.2456 -0.00062444 501.2970609089045 108.24 0.5217 104.1 103.77 104.3 -4.135 0.082882 -0.00025607 NaN 10.074 26 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1230600 23349 8202 15410 15415 0.08153172779657325 KKRRKLRRVRG 11 Unmodified _KKRRKLRRVRG_ 0 0 0 ERCC5|p.A1179V|1|0.31|ENSG00000134899|chr13:102875878-102875878|C/T|missense_variant ERCC5|p.A1179V|1|0.31|ENSG00000134899|chr13:102875878-102875878|C/T|missense_variant ERCC5|p.A1179V|1|0.31|ENSG00000134899|chr13:102875878-102875878|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 726.9924926757812 2 726.994752 1451.97495 NaN NaN NaN NaN NaN NaN NaN 166.77 1 161.82 161.32 162.32 -4.948 0 0 0 0.23698 1 32735 32735 0.30703 0.03801 1 23350 11782 15411 15416 23164 23164 0.2670420228701005 KKRRRRKEKRK 11 Unmodified _KKRRRRKEKRK_ 0 0 0 REV__ENST00000480732.2_1_1:78407858-78408185:+|nuORF REV__ENST00000480732.2_1_1:78407858-78408185:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6885375976562 3 523.685119 1568.03353 NaN NaN NaN NaN NaN NaN NaN 157.96 1 152.69 152.19 153.19 -5.2712 0 0 0 0.22632 1 30642 30642 0.026206 0 1 + 23351 22168 15412 15417 23165 23165 0.2722325886145427 KKRRRRRRTTR 11 Unmodified _KKRRRRRRTTR_ 0 0 0 REV__DEK|p.E11Rfs*53|1|0.4|ENSG00000124795|chr6:18263957-18263957|C/-|frameshift_variant REV__DEK|p.E11Rfs*53|1|0.4|ENSG00000124795|chr6:18263957-18263957|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.690185546875 3 524.008485 1569.00362 NaN NaN NaN NaN NaN NaN NaN 107.19 1 102.87 102.37 103.37 -4.32 0 0 0 0.23698 1 21106 21106 0.073264 0.073264 1 + 23352 13662 15413 15418 23166 23166 0.2418831991612933 KKRRRTKRKRR 11 Unmodified _KKRRRTKRKRR_ 0 0 0 REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1 REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6935424804688 3 523.688864 1568.04476 NaN NaN NaN NaN NaN NaN NaN 137.08 1 132.44 131.94 132.94 -4.6413 0 0 0 0.22632 1 27051 27051 0.094841 0.094841 1 + 23353 14249 15414 15419 23167 23167 0.2834608095558906 KKRVKLRTLLK 11 Unmodified _KKRVKLRTLLK_ 0 0 0 REV__nc|ENSG00000183780|Q8IY50|SLC35F3 REV__nc|ENSG00000183780|Q8IY50|SLC35F3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.528564453125 3 461.660918 1381.96092 NaN NaN NaN NaN NaN NaN NaN 99.659 1 99.659 99.159 100.16 0 0 0 0 0.22632 1 19543 19543 0 0 1 + 23354 18863 15415 15420 23168 23168 0.28522112015366474 KKRYHSGLY 9 Unmodified _KKRYHSGLY_ 0 0 0 REV__USP30|p.V37Sfs*27|1|0.37|ENSG00000135093|chr12:109056701-109056702|-/G|frameshift_variant REV__USP30|p.V37Sfs*27|1|0.37|ENSG00000135093|chr12:109056701-109056702|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3187866210938 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 151.81 1 151.81 151.31 152.31 0 0 0 0 0.19679 1 30406 30406 2.8827 1.3202 1 + 23355 25524 15416 15421 23169 23169 0.05543942837107352 KKRYHSGLY 9 Unmodified _KKRYHSGLY_ 0 0 0 REV__USP30|p.V37Sfs*27|1|0.37|ENSG00000135093|chr12:109056701-109056702|-/G|frameshift_variant REV__USP30|p.V37Sfs*27|1|0.37|ENSG00000135093|chr12:109056701-109056702|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3195190429688 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 157.04 1 151.76 151.26 152.26 -5.2854 0 0 0 0.19679 1 30472 30472 2.8827 2.0377 1 + 23356 25524 15416 15421 23170 23170 0.05543942837107352 KKRYHSGLY 9 Unmodified _KKRYHSGLY_ 0 0 0 REV__USP30|p.V37Sfs*27|1|0.37|ENSG00000135093|chr12:109056701-109056702|-/G|frameshift_variant REV__USP30|p.V37Sfs*27|1|0.37|ENSG00000135093|chr12:109056701-109056702|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3197021484375 2 576.31964 1150.62473 -0.19484 -0.00011229 -0.62474 -0.00036005 -0.81958 -0.00047234 576.3193563684556 80.843 0.94092 77.155 76.582 77.523 -3.6879 69 26 4 0 0 0 0.46598 1 15471 15471 1.2148 0.53344 1 14013000 + 23357 25524 15416 15421 23171 23171 0.05543942837107352 KKRYHSGLY 9 Unmodified _KKRYHSGLY_ 0 0 0 REV__USP30|p.V37Sfs*27|1|0.37|ENSG00000135093|chr12:109056701-109056702|-/G|frameshift_variant REV__USP30|p.V37Sfs*27|1|0.37|ENSG00000135093|chr12:109056701-109056702|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.331787109375 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 68.985 1 65.594 65.094 66.094 -3.3903 0 0 0 0.19649 1 13036 13036 0.40827 0.28045 1 + 23358 25524 15416 15421 23172 23172 0.05543942837107352 KKRYHSGLY 9 Unmodified _KKRYHSGLY_ 0 0 0 REV__USP30|p.V37Sfs*27|1|0.37|ENSG00000135093|chr12:109056701-109056702|-/G|frameshift_variant REV__USP30|p.V37Sfs*27|1|0.37|ENSG00000135093|chr12:109056701-109056702|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3170776367188 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 108.75 1 104.57 104.07 105.07 -4.1826 0 0 0 0.19684 1 20931 20931 0.40827 0.2854 1 + 23359 25524 15416 15421 23173 23173 0.05543942837107352 KKSLLTATP 9 Unmodified _KKSLLTATP_ 0 0 0 REV__ENSG00000196531|ENST00000454682|NACA REV__ENSG00000196531|ENST00000454682|NACA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.244873046875 2 479.800217 957.585882 0.98453 0.00047238 -0.93787 -0.00044999 0.046658 2.2386E-05 479.7996830858634 27.133 0.98883 25.351 25.165 26.153 -1.7821 80 27 4 0 0 0 0.7009 1 4915 4915 6.2058 1.4498 1 59446000 + 23360 19256 15417 15422 23174 23174 0.1053921748269886 KKSRKKKY 8 Unmodified _KKSRKKKY_ 0 0 0 REV__NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant REV__NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2861938476562 2 533.3482 1064.68185 0.10682 5.6975E-05 -1.144 -0.00061015 -1.0372 -0.00055317 533.3475336510478 147.2 0.10333 147.2 147.12 147.22 0 4 2 2 0 0 0 0.77935 1 29438 29438 5.2307 1.6342 1 1082200 + 23361 14805 15418 15423 23175 23175 0.15209410113470767 KKSSSKGQ 8 Unmodified _KKSSSKGQ_ 0 0 0 REV__ENSG00000004534|ENST00000266022|RBM6 REV__ENSG00000004534|ENST00000266022|RBM6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24224853515625 2 425.243067 848.47158 0.16381 6.9659E-05 -0.19826 -8.4308E-05 -0.034447 -1.4648E-05 425.2430044486347 25.943 0.38199 25.943 25.774 26.156 0 16 10 2 0 0 0 8448 1 4510 4510 1.3295 0 1 1094000 + 23362 13837 15419 15424 23176 23176 0.04128327720627567 KKTKIKLTK 9 Unmodified _KKTKIKLTK_ 0 0 0 ENSG00000166262|ENST00000299338|FAM227B ENSG00000166262|ENST00000299338|FAM227B ENSG00000166262|ENST00000299338|FAM227B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7874755859375 2 544.381709 1086.74886 0.12422 6.7623E-05 -1.6634 -0.00090551 -1.5392 -0.00083789 544.8804853574173 145.07 0.17059 140 139.94 140.11 -5.0671 6 4 2 0 0 0 0.65513 1 28040 28040 0.20686 0 1 2016700 23363 5709 15420 15425 23177 23177 0.2089602060452762 KKTKTIKKKK 10 Unmodified _KKTKTIKKKK_ 0 0 0 REV__ENST00000252699.6_1_19:39220693-39220804:+|nuORF REV__ENST00000252699.6_1_19:39220693-39220804:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 616.0165405273438 2 615.93464 1229.85473 NaN NaN NaN NaN NaN NaN NaN 164.71 1 159.65 159.15 160.15 -5.0648 0 0 0 2.8426 1 32140 32140 0.0013812 0 1 + 23364 20114 15421 15426 23178 23178 0.2489935645000969 KKTLTTVL 8 Unmodified _KKTLTTVL_ 0 0 0 REV__tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1 REV__tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 452.2296447753906 2 452.29731 902.580068 -0.043625 -1.9731E-05 -0.26014 -0.00011766 -0.30377 -0.00013739 452.2983726874592 47.676 0.34368 44.734 44.445 44.788 -2.9421 19 9 3 0 0 0 0.89712 1 8649 8649 0.62683 0 1 1197600 + 23365 25337 15422 15427 23179 23179 0.12488118971032236 KKTRPRKIP 9 Unmodified _KKTRPRKIP_ 0 0 0 ENSG00000130508|ENST00000252804|PXDN ENSG00000130508|ENST00000252804|PXDN ENSG00000130508|ENST00000252804|PXDN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2145080566406 3 375.252258 1122.73495 NaN NaN NaN NaN NaN NaN NaN 177.15 1 177.15 176.65 177.65 0 0 0 0 0.19631 1 36696 36696 0.20686 0 1 23366 3613 15423 15428 23180 23180 0.1784878789612776 KKTRTWFQRYR 11 Unmodified _KKTRTWFQRYR_ 0 0 0 REV__ENSG00000162910|ENST00000336520|MRPL55 REV__ENSG00000162910|ENST00000336520|MRPL55 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3829956054688 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 133.32 1 128.5 128 129 -4.8175 0 0 0 0.22632 1 25662 25662 0.094841 0 1 + 23367 17537 15424 15429 23181 23181 0.10713401931002409 KKTSAVNYM 9 Unmodified _KKTSAVNYM_ 0 0 0 nc|ENSG00000103196|Q9H0B8-3|CRISPLD2;ENST00000569262.5_1_16:84853723-84906729:+|nuORF;nc|ENSG00000103196|Q9H0B8-2|CRISPLD2;ENSG00000103196|ENST00000262424|CRISPLD2 nc|ENSG00000103196|Q9H0B8-3|CRISPLD2 nc|ENSG00000103196|Q9H0B8-3|CRISPLD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2761840820312 2 521.273509 1040.53247 0.24933 0.00012997 -0.83332 -0.00043439 -0.584 -0.00030442 521.2732864296977 36.384 0.42056 36.384 36.14 36.561 0 16 11 3 0 0 0 0.5428 1 6696 6696 7.4771 2.5801 1 1222500 23368 2173 15425 15430 23182 23182 0.013820967085393931 KKTSAVNYM 9 Unmodified _KKTSAVNYM_ 0 0 0 nc|ENSG00000103196|Q9H0B8-3|CRISPLD2;ENST00000569262.5_1_16:84853723-84906729:+|nuORF;nc|ENSG00000103196|Q9H0B8-2|CRISPLD2;ENSG00000103196|ENST00000262424|CRISPLD2 nc|ENSG00000103196|Q9H0B8-3|CRISPLD2 nc|ENSG00000103196|Q9H0B8-3|CRISPLD2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.273509 1040.53247 -0.53867 -0.00028079 0.28615 0.00014916 -0.25252 -0.00013163 521.2736283832688 38.973 0.48917 36.424 36.192 36.681 -2.5491 0.02916 0.00066874 NaN 7.4771 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1516800 23369 2173 15425 15430 0.013820967085393931 KKTSAVNYM 9 Unmodified _KKTSAVNYM_ 0 0 0 nc|ENSG00000103196|Q9H0B8-3|CRISPLD2;ENST00000569262.5_1_16:84853723-84906729:+|nuORF;nc|ENSG00000103196|Q9H0B8-2|CRISPLD2;ENSG00000103196|ENST00000262424|CRISPLD2 nc|ENSG00000103196|Q9H0B8-3|CRISPLD2 nc|ENSG00000103196|Q9H0B8-3|CRISPLD2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.273509 1040.53247 0.21423 0.00011167 -0.61727 -0.00032177 -0.40304 -0.00021009 521.2733797078465 38.781 0.38238 36.376 36.198 36.58 -2.4049 -0.018605 -0.00027312 NaN 7.4771 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1235700 23370 2173 15425 15430 0.013820967085393931 KKVDLSGIPI 10 Unmodified _KKVDLSGIPI_ 0 0 0 REV__NEB|p.E1214K|2|0.17|ENSG00000183091|chr2:151677699-151677699|C/T|missense_variant REV__NEB|p.E1214K|2|0.17|ENSG00000183091|chr2:151677699-151677699|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.56024169921875 3 357.225375 1068.6543 0.24357 8.701E-05 1.0104 0.00036093 1.2539 0.00044794 357.56004224479767 27.925 0.21067 26.17 26 26.211 -1.7552 6 5 2 0 0 0 0.7765 1 4696 4696 25.997 2.1963 1 258100 + 23371 24349 15426 15431 23183 23183 0.12271462062562932 KKVIPVRI 8 Unmodified _KKVIPVRI_ 0 0 0 ENST00000380620.8_1_21:41018506-41031729:+|nuORF ENST00000380620.8_1_21:41018506-41031729:+|nuORF ENST00000380620.8_1_21:41018506-41031729:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.22772216796875 3 318.22705 951.659321 NaN NaN NaN NaN NaN NaN NaN 46.091 1 43.224 42.724 43.724 -2.8666 0 0 0 0.21486 1 8382 8382 0.40072 0 1 23372 9318 15427 15432 23184 23184 0.18155810715859388 KKVKKGKK 8 Unmodified _KKVKKGKK_ 0 0 0 REV__ENSG00000170807|ENST00000458573|LMOD2 REV__ENSG00000170807|ENST00000458573|LMOD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.5332336425781 3 315.230683 942.67022 NaN NaN NaN NaN NaN NaN NaN 36.463 1 34.115 33.615 34.615 -2.3479 0 0 0 0.2396 1 6448 6448 0 0 1 + 23373 18180 15428 15433 23185 23185 0.19659213090130834 KKVKKGKK 8 Unmodified _KKVKKGKK_ 0 0 0 REV__ENSG00000170807|ENST00000458573|LMOD2 REV__ENSG00000170807|ENST00000458573|LMOD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1942443847656 3 315.230683 942.67022 NaN NaN NaN NaN NaN NaN NaN 25.733 1 23.88 23.38 24.38 -1.8534 0 0 0 0.2396 1 4241 4241 0 0 1 + 23374 18180 15428 15433 23186 23186 0.19659213090130834 KKVKKKKK 8 Unmodified _KKVKKKKK_ 0 0 0 RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.85980224609375 2 507.879136 1013.74372 NaN NaN NaN NaN NaN NaN NaN 11.219 1 10.315 9.8153 10.815 -0.90401 0 0 0 0.21486 1 1469 1469 0 0 1 23375 7104 15429 15434 23187 23187 0.23739761532601733 KKVLAMMW 8 Unmodified _KKVLAMMW_ 0 0 0 REV__ENST00000261425.7_2_4:39064576-39077703:+|nuORF REV__ENST00000261425.7_2_4:39064576-39077703:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.1917724609375 3 336.190731 1005.55036 NaN NaN NaN NaN NaN NaN NaN 139.41 1 139.41 138.91 139.91 0 0 0 0 0.21486 1 27709 27709 0.45834 0 1 + 23376 20177 15430 15435 23188 23188 0.04781140429702191 KKVLKVRK 8 Unmodified _KKVLKVRK_ 0 0 0 CXCL9|p.R118H|1|0.09|ENSG00000138755|chr4:76003623-76003623|C/T|missense_variant;ENSG00000138755|ENST00000264888|CXCL9 CXCL9|p.R118H|1|0.09|ENSG00000138755|chr4:76003623-76003623|C/T|missense_variant CXCL9|p.R118H|1|0.09|ENSG00000138755|chr4:76003623-76003623|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 500.38848876953125 2 499.863486 997.71242 0.20244 0.00010119 -2.8133 -0.0014063 -2.6109 -0.0013051 500.3650429055988 156.62 0.20789 156.62 156.55 156.76 0 7 5 2 0 0 0 0.88282 1 31435 31435 0.69038 0 1 1202300 23377 760 15431 15436 23189 23189 0.21347188498509695 KKVPKLIKVV 10 Unmodified _KKVPKLIKVV_ 0 0 0 REV__CSNK2A2|p.K77Rfs*3|1|0.32|ENSG00000070770|chr16:58186843-58186843|T/-|frameshift_variant REV__CSNK2A2|p.K77Rfs*3|1|0.32|ENSG00000070770|chr16:58186843-58186843|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.337646484375 2 576.415552 1150.81655 NaN NaN NaN NaN NaN NaN NaN 149.32 1 144.12 143.62 144.62 -5.1994 0 0 0 0.22588 1 28926 28926 1.4819 1.0236 1 + 23378 13597 15432 15437 23190 23190 0.24717470535347275 KKVSLAIKIS 10 Unmodified _KKVSLAIKIS_ 0 0 0 REV__ENST00000265070.6_1_5:32126678-32126735:-|nuORF REV__ENST00000265070.6_1_5:32126678-32126735:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7767333984375 2 543.865892 1085.71723 NaN NaN NaN NaN NaN NaN NaN 130.14 1 130.14 129.64 130.64 0 0 0 0 2.8426 1 25718 25718 0.69767 0.68939 1 + 23379 20238 15433 15438 23191 23191 0.1778002785060835 KKVSLELEQWI 11 Unmodified _KKVSLELEQWI_ 0 0 0 REV__UGP2|p.R25W|1|0.24|ENSG00000169764|chr2:63856359-63856359|C/T|missense_variant REV__UGP2|p.R25W|1|0.24|ENSG00000169764|chr2:63856359-63856359|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2319030761719 3 458.26601 1371.7762 0.25323 0.00011605 -0.24244 -0.0001111 0.010794 4.9467E-06 458.2659004746167 120.96 0.61695 120.96 120.64 121.26 0 29 16 2 0 0 0 0.65962 1 23786 23786 0.172 0.060958 1 3116700 + 23380 25513 15434 15439 23192 23192 0.1051845935428446 KKWRQIIFG 9 Unmodified _KKWRQIIFG_ 0 0 0 ENSG00000115423|ENST00000389394|DNAH6;DNAH6|p.S3773Lfs*5|1|0.09|ENSG00000115423|chr2:84796377-84796377|T/-|frameshift_variant;nc|ENSG00000115423|Q9C0G6-2|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 588.7470703125 2 588.356025 1174.6975 0.57255 0.00033686 1.1304 0.0006651 1.703 0.001002 588.8563821670394 164.75 0.17097 159.7 159.59 159.76 -5.0446 5 4 2 0 0 0 0.74257 1 32158 32158 4.3292 0.73274 1 5539000 23381 2855 15435 15440 23193 23193 0.11713696630499726 KKWWRRKYLEF 11 Unmodified _KKWWRRKYLEF_ 0 0 0 ENST00000433473.7_1_1:40558092-40558149:-|nuORF ENST00000433473.7_1_1:40558092-40558149:-|nuORF ENST00000433473.7_1_1:40558092-40558149:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7820434570312 3 547.312177 1638.9147 0.10948 5.992E-05 -1.6476 -0.00090176 -1.5381 -0.00084184 547.309870706077 141.21 0.17709 136.22 136.1 136.27 -4.9877 6 4 2 0 0 0 0.96227 1 27188 27188 0 0 1 1495400 23382 9811 15436 15441 23194 23194 0.12080047113272485 KKWWRRKYLEF 11 Unmodified _KKWWRRKYLEF_ 0 0 0 ENST00000433473.7_1_1:40558092-40558149:-|nuORF ENST00000433473.7_1_1:40558092-40558149:-|nuORF ENST00000433473.7_1_1:40558092-40558149:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.79052734375 3 547.312177 1638.9147 0.49855 0.00027286 3.9532 0.0021636 4.4518 0.0024365 547.6491412044243 157.83 0.22165 152.56 152.47 152.69 -5.2712 7 5 2 0 0 0 0.82662 1 30636 30636 0.094841 0.094841 1 2961300 23383 9811 15436 15441 23195 23195 0.12080047113272485 KKYHLMQFAEV 11 Unmodified _KKYHLMQFAEV_ 0 0 0 nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2480163574219 3 465.248074 1392.72239 NaN NaN NaN NaN NaN NaN NaN 127.4 1 122.6 122.1 123.1 -4.7958 0 0 0 0.22632 1 24453 24453 0.03141 0 1 23384 3421 15437 15442 23196 23196 0.04173963650941914 KKYKGETLK 9 Unmodified _KKYKGETLK_ 0 0 0 REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1 REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.780029296875 2 547.832049 1093.64954 NaN NaN NaN NaN NaN NaN NaN 132.41 1 132.41 131.91 132.91 0 0 0 0 0.19646 1 26176 26176 0.40827 0 1 + 23385 24970 15438 15443 23197 23197 0.10646577919806077 KKYKKKILIV 10 Unmodified _KKYKKKILIV_ 0 0 0 tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7530517578125 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 147.83 1 147.83 147.33 148.33 0 0 0 0 0.22588 1 29574 29574 0.40072 0 1 23386 26491 15439 15444 23198 23198 0.24977428598162987 KKYLCKVK 8 Unmodified _KKYLCKVK_ 0 0 0 ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 505.2980651855469 2 505.31498 1008.61541 0.20142 0.00010178 2.4155 0.0012206 2.6169 0.0013224 505.8189383682593 143.04 0.10504 143.04 142.97 143.07 0 4 2 2 0 0 0 8448 1 28520 28520 1.7423 1.6985 1 897270 23387 239 15440 15445 23199 23199 0.11144458227204268 KKYPIKSRKL 10 Unmodified _KKYPIKSRKL_ 0 0 0 nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENSG00000156787|ENST00000287380|TBC1D31;ENST00000524307.5_1_8:124089445-124141439:+|nuORF;nc|ENSG00000156787|Q96DN5-3|TBC1D31 nc|ENSG00000156787|Q96DN5-2|TBC1D31 nc|ENSG00000156787|Q96DN5-2|TBC1D31 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7592163085938 2 630.911165 1259.80778 NaN NaN NaN NaN NaN NaN NaN 124.25 1 124.25 123.75 124.75 0 0 0 0 2.8426 1 24496 24496 0.063865 0 1 23388 5103 15441 15446 23200 23200 0.1882649689889604 KLADCEQSP 9 Unmodified _KLADCEQSP_ 0 0 0 nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000473624.1_1_22:46759891-46761251:-|nuORF nc|ENSG00000075275|Q9NYQ6|CELSR1 nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.0314636230469 3 330.823542 989.448796 0.2517 8.3268E-05 1.7708 0.00058583 2.0225 0.0006691 330.8239552947131 73.061 0.18106 69.433 69.271 69.452 -3.6275 6 4 2 0 0 0 0.88109 1 13781 13781 4.1895 0.90819 1 811590 23389 1514 15442 15447 23201 23201 -0.046350594591672234 KLADKLYNL 9 Unmodified _KLADKLYNL_ 0 0 0 ENST00000559834.1_1_15:91474507-91475192:-|nuORF;nc|ENSG00000184508|Q8N4P3-2|HDDC3;ENST00000494993.1_1_15:91474507-91475362:-|nuORF;ENSG00000184508|ENST00000394272|HDDC3 ENST00000559834.1_1_15:91474507-91475192:-|nuORF ENST00000559834.1_1_15:91474507-91475192:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21600341796875 3 359.881608 1076.623 -0.43551 -0.00015673 0.55514 0.00019979 0.11964 4.3056E-05 359.88174394748637 91.753 0.66402 91.753 91.462 92.126 0 42 18 3 0 0 0 0.5354 1 17952 17952 17.443 0.87677 1 4141300 23390 6916 15443 15448 23202 23202 0.08774889028472899 KLAEIVKQV 9 Unmodified _KLAEIVKQV_ 0 0 0 ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5 ENSG00000089022|ENST00000550735|MAPKAPK5 ENSG00000089022|ENST00000550735|MAPKAPK5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.4920654296875 3 343.221853 1026.64373 -0.32309 -0.00011089 0.57026 0.00019573 0.24717 8.4834E-05 343.2218459370786 67.802 0.61571 64.694 64.387 65.003 -3.1086 46 17 4 0 0 0 0.058839 1 13106 13106 43.858 26.745 1 3420500 23391 1744 15444 15449 23203 23203 0.13147479408144136 KLAEIVKQV 9 Unmodified _KLAEIVKQV_ 0 0 0 ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5 ENSG00000089022|ENST00000550735|MAPKAPK5 ENSG00000089022|ENST00000550735|MAPKAPK5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 514.2308349609375 2 514.329142 1026.64373 -0.20361 -0.00010472 0.27669 0.00014231 0.073081 3.7588E-05 514.3292859379542 67.773 0.75404 64.664 64.283 65.037 -3.1086 56 21 4 0 0 0 0.15889 1 13208 13208 22.736 14.581 1 6592800 23392 1744 15444 15449 23204 23204 0.13147479408144136 KLAEIVKQV 9 Unmodified _KLAEIVKQV_ 0 0 0 ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5 ENSG00000089022|ENST00000550735|MAPKAPK5 ENSG00000089022|ENST00000550735|MAPKAPK5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.18597412109375 3 343.221853 1026.64373 NaN NaN NaN NaN NaN NaN NaN 68.482 1 64.946 64.446 65.446 -3.5362 0 0 0 0.056488 1 12872 12872 43.982 26.869 1 23393 1744 15444 15449 23205 23205 0.13147479408144136 KLAEIVKQV 9 Unmodified _KLAEIVKQV_ 0 0 0 ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5 ENSG00000089022|ENST00000550735|MAPKAPK5 ENSG00000089022|ENST00000550735|MAPKAPK5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.1859130859375 3 343.221853 1026.64373 -0.35811 -0.00012291 0.17224 5.9118E-05 -0.18586 -6.3792E-05 343.2219216512164 68.149 0.79477 64.758 64.355 65.15 -3.3903 45 22 3 0 0 0 0.38759 1 12808 12808 22.736 14.581 1 3506100 23394 1744 15444 15449 23206 23206 0.13147479408144136 KLAEIVKQV 9 Unmodified _KLAEIVKQV_ 0 0 0 ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5 ENSG00000089022|ENST00000550735|MAPKAPK5 ENSG00000089022|ENST00000550735|MAPKAPK5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 514.329142 1026.64373 -0.20888 -0.00010743 0.5942 0.00030561 0.38532 0.00019818 514.3293857327592 68.375 0.62603 64.839 64.414 65.04 -3.5362 0.092149 0.00038641 NaN 22.736 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 6057200 23395 1744 15444 15449 0.13147479408144136 KLAEIVKQV 9 Unmodified _KLAEIVKQV_ 0 0 0 ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5 ENSG00000089022|ENST00000550735|MAPKAPK5 ENSG00000089022|ENST00000550735|MAPKAPK5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 514.329142 1026.64373 0.31263 0.0001608 -0.28326 -0.00014569 0.029369 1.5105E-05 514.3289411019667 68.127 0.75951 64.737 64.355 65.115 -3.3903 -0.0095197 -0.0005162 NaN 22.736 56 21 4 NaN NaN NaN NaN 0 NaN NaN 0 6711100 23396 1744 15444 15449 0.13147479408144136 KLAESKVSV 9 Unmodified _KLAESKVSV_ 0 0 0 nc|ENSG00000139218|Q99590-2|SCAF11;ENSG00000139218|ENST00000369367|SCAF11;ENST00000550629.1_1_12:46313059-46318516:-|nuORF nc|ENSG00000139218|Q99590-2|SCAF11 nc|ENSG00000139218|Q99590-2|SCAF11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2457275390625 2 480.78985 959.565146 0.064184 3.0859E-05 -0.49335 -0.0002372 -0.42917 -0.00020634 480.7895388157233 33.283 0.48629 30.966 30.662 31.148 -2.3175 23 13 2 0 0 0 0.50174 1 6058 6058 34.222 7.9536 1 1730200 23397 4231 15445 15450 23207 23207 0.08374627103057719 KLAKLQAQV 9 Unmodified _KLAKLQAQV_ 0 0 0 ENSG00000134717|ENST00000313334|BTF3L4;BTF3L4|p.K45Nfs*4|1|0.35|ENSG00000134717|chr1:52064899-52064899|A/-|frameshift_variant;nc|ENSG00000134717|Q96K17-3|BTF3L4;ENST00000524414.5_1_1:52521992-52530613:+|nuORF;ENST00000533836.1_1_1:52522019-52536962:+|nuORF;ENST00000510787.5_1_5:72794492-72798477:+|nuORF;nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3 ENSG00000134717|ENST00000313334|BTF3L4 ENSG00000134717|ENST00000313334|BTF3L4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 333.82257080078125 3 333.550082 997.628415 -0.79204 -0.00026418 0.815 0.00027184 0.02296 7.6582E-06 333.5502963773916 45.431 0.42176 42.564 42.397 42.818 -2.8665 20 11 2 0 0 0 0.38759 1 8239 8239 30.703 22.548 1 1356900 23398 3870 15446 15451 23208 23208 0.1295061261095043 KLAKLQAQV 9 Unmodified _KLAKLQAQV_ 0 0 0 ENSG00000134717|ENST00000313334|BTF3L4;BTF3L4|p.K45Nfs*4|1|0.35|ENSG00000134717|chr1:52064899-52064899|A/-|frameshift_variant;nc|ENSG00000134717|Q96K17-3|BTF3L4;ENST00000524414.5_1_1:52521992-52530613:+|nuORF;ENST00000533836.1_1_1:52522019-52536962:+|nuORF;ENST00000510787.5_1_5:72794492-72798477:+|nuORF;nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3 ENSG00000134717|ENST00000313334|BTF3L4 ENSG00000134717|ENST00000313334|BTF3L4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 333.550082 997.628415 -0.18762 -6.2581E-05 0.23588 7.8679E-05 0.048263 1.6098E-05 333.55007147641913 42.781 0.46202 42.781 42.491 42.953 0 0.15343 1.4984E-05 NaN 30.703 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1255900 23399 3870 15446 15451 0.1295061261095043 KLAKLQAQV 9 Unmodified _KLAKLQAQV_ 0 0 0 ENSG00000134717|ENST00000313334|BTF3L4;BTF3L4|p.K45Nfs*4|1|0.35|ENSG00000134717|chr1:52064899-52064899|A/-|frameshift_variant;nc|ENSG00000134717|Q96K17-3|BTF3L4;ENST00000524414.5_1_1:52521992-52530613:+|nuORF;ENST00000533836.1_1_1:52522019-52536962:+|nuORF;ENST00000510787.5_1_5:72794492-72798477:+|nuORF;nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3 ENSG00000134717|ENST00000313334|BTF3L4 ENSG00000134717|ENST00000313334|BTF3L4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 333.550082 997.628415 -0.28044 -9.3541E-05 0.17179 5.7299E-05 -0.10865 -3.6242E-05 333.5501125406031 45.368 0.38859 42.578 42.42 42.808 -2.79 -0.04963 -4.9156E-05 NaN 30.703 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1657200 23400 3870 15446 15451 0.1295061261095043 KLAKRKGQ 8 Unmodified _KLAKRKGQ_ 0 0 0 REV__MAP2K4|p.L346Cfs*17|1|0.61|ENSG00000065559|chr17:12129283-12129283|T/-|frameshift_variant REV__MAP2K4|p.L346Cfs*17|1|0.61|ENSG00000065559|chr17:12129283-12129283|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.206538 927.597784 NaN NaN NaN NaN NaN NaN NaN 50.672 1 47.79 47.29 48.29 -2.8819 0 0 0 0.2343 1 9615 9615 0.25148 0.18749 1 + 23401 14191 15447 15452 23209 23209 0.13108879016567698 KLAPQLRGA 9 Unmodified _KLAPQLRGA_ 0 0 0 ENST00000265990.10_1_10:93683679-93683796:+|nuORF ENST00000265990.10_1_10:93683679-93683796:+|nuORF ENST00000265990.10_1_10:93683679-93683796:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.1944274902344 3 318.534543 952.581799 -0.66017 -0.00021029 0.72785 0.00023184 0.067672 2.1556E-05 318.5347165111808 37.367 0.51226 34.898 34.639 35.151 -2.4688 31 14 3 0 0 0 0.35556 2 6886 6886;6930 14.987 4.4809 1 3317900 23402 8369 15448 15453 23210;23211 23210 0.10361172779653316 KLAPQLRGA 9 Unmodified _KLAPQLRGA_ 0 0 0 ENST00000265990.10_1_10:93683679-93683796:+|nuORF ENST00000265990.10_1_10:93683679-93683796:+|nuORF ENST00000265990.10_1_10:93683679-93683796:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 318.534543 952.581799 -0.4498 -0.00014328 0.39694 0.00012644 -0.052855 -1.6836E-05 318.5346364806032 37.259 0.56034 34.921 34.628 35.188 -2.3375 -0.038522 -6.5696E-05 NaN 14.987 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2753600 23403 8369 15448 15453 0.10361172779653316 KLARDLKEA 9 Unmodified _KLARDLKEA_ 0 0 0 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.266845703125 2 522.314023 1042.61349 0.091323 4.7699E-05 0.077234 4.034E-05 0.16856 8.804E-05 522.3140190915573 14.754 0.14022 14.754 14.667 14.807 0 6 3 2 0 0 0 0.6226 1 2224 2224 2.4985 0 1 976340 23404 2167 15449 15454 23212 23212 0.09389120742957857 KLARRTYPKK 10 Unmodified _KLARRTYPKK_ 0 0 0 nc|ENSG00000118242|Q8N565-2|MREG;ENSG00000118242|ENST00000263268|MREG nc|ENSG00000118242|Q8N565-2|MREG nc|ENSG00000118242|Q8N565-2|MREG MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7670288085938 2 630.898589 1259.78262 NaN NaN NaN NaN NaN NaN NaN 157.03 1 151.74 151.24 152.24 -5.2854 0 0 0 0.22588 1 30468 30468 8.7454 0.58988 1 23405 3023 15450 15455 23213 23213 0.1631244209631859 KLCMVNVLN 9 Unmodified _KLCMVNVLN_ 0 0 0 REV__ZNF197|p.N972Tfs*?|1|0.37|ENSG00000186448|chr3:44644040-44644040|A/-|frameshift_variant REV__ZNF197|p.N972Tfs*?|1|0.37|ENSG00000186448|chr3:44644040-44644040|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.11968994140625 3 345.189279 1032.54601 NaN NaN NaN NaN NaN NaN NaN 118.47 1 113.85 113.35 114.35 -4.6106 0 0 0 0.23508 1 22731 22731 1.0715 0.10919 1 + 23406 25569 15451 15456 23214 23214 0.031036312161404567 KLDAFGCCYQL 11 Unmodified _KLDAFGCCYQL_ 0 0 0 REV__ENSG00000145642|ENST00000389074|SHISAL2B REV__ENSG00000145642|ENST00000389074|SHISAL2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.775634765625 2 630.791209 1259.56787 NaN NaN NaN NaN NaN NaN NaN 156.66 1 151.39 150.89 151.89 -5.2712 0 0 0 0.23087 1 30385 30385 7.609 0 1 + 23407 16845 15452 15457 23215 23215 -0.05153608825958145 KLDAFVEGV 9 Unmodified _KLDAFVEGV_ 0 0 0 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27166748046875 2 489.26875 976.522947 0.20669 0.00010113 -0.027649 -1.3528E-05 0.17904 8.7598E-05 489.2686860888107 111.1 1.3994 111.1 110.47 111.87 0 125 39 5 0 0 0 0.070777 4 21871 21780;21871;21913;21916 97.138 79.13 1 77276000 23408 5034 15453 15458 23216;23217;23218;23219 23217 0.03374651694673503 KLDAFVEGV 9 Unmodified _KLDAFVEGV_ 0 0 0 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27191162109375 2 489.26875 976.522947 0.12069 5.9052E-05 0.10807 5.2876E-05 0.22877 0.00011193 489.2687559544024 115.19 1.1693 110.72 110.29 111.46 -4.4726 114 33 5 0 0 0 0.37634 1 22785 22785 27.223 0.95509 1 125270000 23409 5034 15453 15458 23220 23220 0.03374651694673503 KLDAFVEGV 9 Unmodified _KLDAFVEGV_ 0 0 0 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2603454589844 2 489.26875 976.522947 0.33794 0.00016534 -0.12351 -6.0431E-05 0.21442 0.00010491 489.2686277154148 115.3 1.4656 110.75 110.33 111.79 -4.555 122 41 5 0 0 0 0.086124 3 22183 22138;22183;22218 105.38 83.634 1 84306000 23410 5034 15453 15458 23221;23222;23223 23222 0.03374651694673503 KLDAFVEGV 9 Unmodified _KLDAFVEGV_ 0 0 0 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.271728515625 2 489.26875 976.522947 0.27292 0.00013353 -0.10128 -4.9551E-05 0.17165 8.3981E-05 489.26864486926365 115.09 1.2996 110.78 110.31 111.61 -4.3136 124 36 5 0 0 0 0.069179 2 22227 22225;22227 59.013 36.277 1 87505000 23411 5034 15453 15458 23224;23225 23225 0.03374651694673503 KLDDTYIKA 9 Unmodified _KLDDTYIKA_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2820434570312 2 533.792589 1065.57063 0.074411 3.972E-05 -0.13242 -7.0686E-05 -0.058011 -3.0966E-05 533.7924976392983 54.235 1.0263 54.235 53.603 54.63 0 74 28 3 0 0 0 0.070861 1 10362 10362 85.764 36.21 1 8781200 23412 5890 15454 15459 23226 23226 0.04046305894826219 KLDDTYIKA 9 Unmodified _KLDDTYIKA_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.08673095703125 3 356.197485 1065.57063 -0.41035 -0.00014617 0.73559 0.00026201 0.32523 0.00011585 356.197611652836 56.789 1.0425 53.894 53.337 54.379 -2.8944 90 29 4 0 0 0 0.54076 1 10816 10816 24.991 9.7425 1 6375900 23413 5890 15454 15459 23227 23227 0.04046305894826219 KLDDTYIKA 9 Unmodified _KLDDTYIKA_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2762451171875 2 533.792589 1065.57063 -0.054569 -2.9129E-05 0.0081632 4.3574E-06 -0.046406 -2.4771E-05 533.7925199109554 56.802 1.0764 53.907 53.337 54.413 -2.8944 92 30 4 0 0 0 0.0022188 1 10887 10887 121.5 69.873 1 10077000 23414 5890 15454 15459 23228 23228 0.04046305894826219 KLDDTYIKA 9 Unmodified _KLDDTYIKA_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.0747985839844 3 356.197485 1065.57063 0.075232 2.6797E-05 0.20463 7.289E-05 0.27986 9.9687E-05 356.19744931119243 57.271 1.0527 54.082 53.404 54.457 -3.1895 84 29 4 0 0 0 0.85111 1 10500 10500 2.086 1.1237 1 5631300 23415 5890 15454 15459 23229 23229 0.04046305894826219 KLDDTYIKA 9 Unmodified _KLDDTYIKA_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2791137695312 2 533.792589 1065.57063 0.42561 0.00022719 -0.46865 -0.00025016 -0.043041 -2.2975E-05 533.7923335371077 57.14 1.1553 53.951 53.302 54.457 -3.1895 84 32 3 0 0 0 0.032284 1 10598 10598 101.54 46.041 1 10746000 23416 5890 15454 15459 23230 23230 0.04046305894826219 KLDDTYIKA 9 Unmodified _KLDDTYIKA_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2760009765625 2 533.792589 1065.57063 0.10187 5.4377E-05 -0.10727 -5.7258E-05 -0.0053965 -2.8806E-06 533.7925319457319 57.307 1.1363 54.13 53.438 54.575 -3.1761 79 31 3 0 0 0 0.081606 1 10608 10608 73.196 27.175 1 8338000 23417 5890 15454 15459 23231 23231 0.04046305894826219 KLDDTYIKA 9 Unmodified _KLDDTYIKA_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 356.197485 1065.57063 -0.308 -0.00010971 0.41389 0.00014743 0.10589 3.7718E-05 356.197526104493 54.222 0.99074 54.222 53.639 54.63 0 0.17652 -0.00011595 NaN 24.991 63 27 3 NaN NaN NaN NaN 0 NaN NaN 0 4116900 23418 5890 15454 15459 0.04046305894826219 KLDDTYIKA 9 Unmodified _KLDDTYIKA_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 356.197485 1065.57063 -0.64052 -0.00022815 0.88378 0.0003148 0.24327 8.6651E-05 356.19771202343907 57.161 1.1011 53.985 53.474 54.575 -3.1761 -0.061039 0.00038617 NaN 24.991 79 30 3 NaN NaN NaN NaN 0 NaN NaN 0 5153100 23419 5890 15454 15459 0.04046305894826219 KLDDYVYYV 9 Unmodified _KLDDYVYYV_ 0 0 0 RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant;ENSG00000170881|ENST00000303545|RNF139 RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.26171875 2 589.292422 1176.57029 0.34234 0.00020174 0.1766 0.00010407 0.51894 0.00030581 589.2925858816786 128.64 0.60039 128.64 128.31 128.91 0 42 16 3 0 0 0 0.41266 2 25399 25399;25423 24.991 10.153 1 6520000 23420 6106 15455 15460 23232;23233 23232 -0.010931138250271033 KLDDYVYYV 9 Unmodified _KLDDYVYYV_ 0 0 0 RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant;ENSG00000170881|ENST00000303545|RNF139 RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.25439453125 2 589.292422 1176.57029 0.21151 0.00012464 0.44943 0.00026484 0.66093 0.00038948 589.2926087345124 133.64 0.78168 128.82 128.38 129.16 -4.8175 44 21 3 0 0 0 0.58077 1 25724 25724 14.405 1.3629 1 6949400 23421 6106 15455 15460 23234 23234 -0.010931138250271033 KLDDYVYYV 9 Unmodified _KLDDYVYYV_ 0 0 0 RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant;ENSG00000170881|ENST00000303545|RNF139 RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 589.292422 1176.57029 0.42104 0.00024811 0.032534 1.9172E-05 0.45357 0.00026729 589.2924331451734 133.48 0.66544 128.84 128.51 129.18 -4.6399 0.067217 -0.00013496 NaN 24.991 45 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6608300 23422 6106 15455 15460 -0.010931138250271033 KLDDYVYYV 9 Unmodified _KLDDYVYYV_ 0 0 0 RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant;ENSG00000170881|ENST00000303545|RNF139 RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.292422 1176.57029 0.44407 0.00026169 -0.043382 -2.5565E-05 0.40069 0.00023612 589.2922627574618 133.67 0.66107 128.79 128.37 129.03 -4.8726 0.017434 -0.00022444 NaN 24.991 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 5469600 23423 6106 15455 15460 -0.010931138250271033 KLDEHIIPL 9 Unmodified _KLDEHIIPL_ 0 0 0 nc|ENSG00000134779|Q68CL5-5|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;TPGS2|p.K264Efs*26|1|0.21|ENSG00000134779|chr18:36796919-36796920|-/T|frameshift_variant;ENSG00000134779|ENST00000334295|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2161560058594 3 359.881608 1076.623 -0.15485 -5.5729E-05 0.67199 0.00024184 0.51714 0.00018611 360.21628337507957 126.34 0.39133 121.72 121.48 121.87 -4.6172 15 10 2 0 0 0 0.52027 1 24905 24905 18.373 11.65 1 1144600 23424 12337 15456 15461 23235 23235 0.08774889028472899 KLDEHIIPL 9 Unmodified _KLDEHIIPL_ 0 0 0 nc|ENSG00000134779|Q68CL5-5|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;TPGS2|p.K264Efs*26|1|0.21|ENSG00000134779|chr18:36796919-36796920|-/T|frameshift_variant;ENSG00000134779|ENST00000334295|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2164001464844 3 359.881608 1076.623 0.25607 9.2154E-05 -0.27875 -0.00010032 -0.02268 -8.1623E-06 359.8814473690675 126.72 0.53032 121.93 121.57 122.1 -4.7958 23 14 2 0 0 0 0.52027 2 24302 24302;24323 18.373 11.65 1 1338200 23425 12337 15456 15461 23236;23237 23236 0.08774889028472899 KLDEHIIPL 9 Unmodified _KLDEHIIPL_ 0 0 0 nc|ENSG00000134779|Q68CL5-5|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;TPGS2|p.K264Efs*26|1|0.21|ENSG00000134779|chr18:36796919-36796920|-/T|frameshift_variant;ENSG00000134779|ENST00000334295|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.216552734375 3 359.881608 1076.623 -0.50275 -0.00018093 0.67512 0.00024296 0.17237 6.2032E-05 359.88175128512955 126.58 0.50871 121.88 121.61 122.12 -4.6998 21 13 2 0 0 0 0.52027 2 24350 24345;24350 18.373 9.9288 1 1897000 23426 12337 15456 15461 23238;23239 23239 0.08774889028472899 KLDELVKKI 9 Unmodified _KLDELVKKI_ 0 0 0 ENST00000426925.5_1_3:15314864-15374612:-|nuORF;ENSG00000131370|ENST00000383791|SH3BP5 ENST00000426925.5_1_3:15314864-15374612:-|nuORF ENST00000426925.5_1_3:15314864-15374612:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 362.86712646484375 3 362.569142 1084.6856 -0.67589 -0.00024506 0.87745 0.00031814 0.20156 7.308E-05 362.5693402050004 78.213 0.31877 74.554 74.481 74.8 -3.6588 11 8 2 0 0 0 0.47592 1 14940 14940 17.113 4.8722 1 610020 23427 3668 15457 15462 23240 23240 0.14664035096643602 KLDELVKKI 9 Unmodified _KLDELVKKI_ 0 0 0 ENST00000426925.5_1_3:15314864-15374612:-|nuORF;ENSG00000131370|ENST00000383791|SH3BP5 ENST00000426925.5_1_3:15314864-15374612:-|nuORF ENST00000426925.5_1_3:15314864-15374612:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 362.569142 1084.6856 -0.25473 -9.2357E-05 0.27368 9.9227E-05 0.018948 6.8701E-06 362.5693980149375 78.003 0.28122 74.54 74.323 74.604 -3.4633 -0.0068888 -0.00034611 NaN 17.113 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 555580 23428 3668 15457 15462 0.14664035096643602 KLDENPSI 8 Unmodified _KLDENPSI_ 0 0 0 HUERS-P3-int_dup372|chrY:9141681-9141905:-|1.590563956605098|0.0102572563970316|7.28|480.0|9|3|sense HUERS-P3-int_dup372|chrY:9141681-9141905:-|1.590563956605098|0.0102572563970316|7.28|480.0|9|3|sense HUERS-P3-int_dup372|chrY:9141681-9141905:-|1.590563956605098|0.0102572563970316|7.28|480.0|9|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2244873046875 2 458.242732 914.470912 -0.47622 -0.00021822 1.3083 0.00059952 0.83209 0.0003813 458.2431655603706 37.367 0.37876 34.898 34.772 35.151 -2.4688 14 10 2 0 0 0 8448 1 6910 6910 6.2058 5.7975 1 824530 23429 11925 15458 15463 23241 23241 0.010254882809135779 KLDEQGLNY 9 Unmodified _KLDEQGLNY_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2623901367188 2 540.272021 1078.52949 0.23568 0.00012733 0.85505 0.00046196 1.0907 0.00058929 540.2724756894271 64.015 0.55724 61.017 60.697 61.255 -2.9975 35 15 3 0 0 0 0.25495 1 12367 12367 43.772 7.6454 1 4188500 23430 7377 15459 15464 23242 23242 -0.0066345514460408594 KLDEQGLNY 9 Unmodified _KLDEQGLNY_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.272021 1078.52949 -0.030874 -1.668E-05 2.2494 0.0012153 2.2185 0.0011986 540.2736609056085 60.903 0.9012 60.903 60.662 61.563 0 -0.082938 0.001082 NaN 43.772 38 25 2 NaN NaN NaN NaN 0 NaN NaN 0 3080600 23431 7377 15459 15464 -0.0066345514460408594 KLDEQGLNY 9 Unmodified _KLDEQGLNY_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.272021 1078.52949 0.30653 0.00016561 1.7699 0.0009562 2.0764 0.0011218 540.2732055503966 64.495 0.63519 61.037 60.662 61.297 -3.4581 0.051345 0.00056383 NaN 43.772 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3300100 23432 7377 15459 15464 -0.0066345514460408594 KLDESIYDV 9 Unmodified _KLDESIYDV_ 0 0 0 ENSG00000196792|ENST00000357479|STRN3;nc|ENSG00000196792|Q13033-2|STRN3 ENSG00000196792|ENST00000357479|STRN3 ENSG00000196792|ENST00000357479|STRN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2742309570312 2 541.274229 1080.53391 0.24385 0.00013199 0.070291 3.8047E-05 0.31414 0.00017004 541.274074671899 98.641 0.6556 94.509 94.056 94.712 -4.1326 59 18 4 0 0 0 0.051332 3 19398 19351;19394;19398 70.332 51.557 1 18499000 23433 7310 15460 15465 23243;23244;23245 23245 -0.0031399072172462184 KLDESIYDV 9 Unmodified _KLDESIYDV_ 0 0 0 ENSG00000196792|ENST00000357479|STRN3;nc|ENSG00000196792|Q13033-2|STRN3 ENSG00000196792|ENST00000357479|STRN3 ENSG00000196792|ENST00000357479|STRN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.274169921875 2 541.274229 1080.53391 0.27303 0.00014779 0.062023 3.3572E-05 0.33506 0.00018136 541.2740354629285 98.805 0.56519 94.536 94.192 94.757 -4.2692 52 15 4 0 0 0 0.031786 2 18890 18888;18890 79.596 40.192 1 17085000 23434 7310 15460 15465 23246;23247 23247 -0.0031399072172462184 KLDESIYDV 9 Unmodified _KLDESIYDV_ 0 0 0 ENSG00000196792|ENST00000357479|STRN3;nc|ENSG00000196792|Q13033-2|STRN3 ENSG00000196792|ENST00000357479|STRN3 ENSG00000196792|ENST00000357479|STRN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2742309570312 2 541.274229 1080.53391 0.20294 0.00010985 -0.015037 -8.1392E-06 0.1879 0.00010171 541.2740571188353 98.453 0.60281 94.497 94.127 94.73 -3.9564 57 17 4 0 0 0 0.036303 2 18925 18925;18928 70.332 41.856 1 17668000 23435 7310 15460 15465 23248;23249 23248 -0.0031399072172462184 KLDEWKNHLWD 11 Unmodified _KLDEWKNHLWD_ 0 0 0 REV__tr|U7T719|U7T719_FUSNUPhagetailtapemeasureprotein,TP901family,coreregionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00086PE=4SV=1 REV__tr|U7T719|U7T719_FUSNUPhagetailtapemeasureprotein,TP901family,coreregionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00086PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3717651367188 2 742.370058 1482.72556 NaN NaN NaN NaN NaN NaN NaN 164.94 1 159.87 159.37 160.37 -5.0648 0 0 0 0.23476 1 32197 32197 4.5289 1.5336 1 + 23436 25459 15461 15466 23250 23250 0.0035093002927624184 KLDPEQLL 8 Unmodified _KLDPEQLL_ 0 0 0 REV__ENST00000347053.7_1_7:107052966-107053029:-|nuORF REV__ENST00000347053.7_1_7:107052966-107053029:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7294616699219 2 478.276575 954.538597 0.096023 4.5926E-05 0.02902 1.388E-05 0.12504 5.9805E-05 478.2765174580509 98.685 1.0045 98.685 98.157 99.161 0 88 28 4 0 0 0 8448 1 19392 19392 33.593 18.607 1 51236000 + 23437 20756 15462 15467 23251 23251 0.0595093821170849 KLDPEQLL 8 Unmodified _KLDPEQLL_ 0 0 0 REV__ENST00000347053.7_1_7:107052966-107053029:-|nuORF REV__ENST00000347053.7_1_7:107052966-107053029:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7273864746094 2 478.276575 954.538597 -0.029409 -1.4066E-05 0.14471 6.9211E-05 0.1153 5.5145E-05 478.27657953641125 102.56 1.0201 98.372 97.855 98.875 -4.1861 88 28 4 0 0 0 0.63054 1 20100 20100 33.593 0 1 34764000 + 23438 20756 15462 15467 23252 23252 0.0595093821170849 KLDPEQLL 8 Unmodified _KLDPEQLL_ 0 0 0 REV__ENST00000347053.7_1_7:107052966-107053029:-|nuORF REV__ENST00000347053.7_1_7:107052966-107053029:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73919677734375 2 478.276575 954.538597 0.27573 0.00013188 -0.20179 -9.6513E-05 0.073938 3.5363E-05 478.27640442253073 102.72 1.0476 98.403 97.906 98.954 -4.3208 89 29 4 0 0 0 8448 2 19614 19614;19686 33.593 0 1 32853000 + 23439 20756 15462 15467 23253;23254 23253 0.0595093821170849 KLDPEQLL 8 Unmodified _KLDPEQLL_ 0 0 0 REV__ENST00000347053.7_1_7:107052966-107053029:-|nuORF REV__ENST00000347053.7_1_7:107052966-107053029:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72601318359375 2 478.276575 954.538597 0.53227 0.00025457 -0.42819 -0.00020479 0.10408 4.9778E-05 478.2763068669277 102.45 1.0941 98.427 97.936 99.03 -4.0212 90 30 4 0 0 0 8448 1 19659 19659 39.111 0 1 39948000 + 23440 20756 15462 15467 23255 23255 0.0595093821170849 KLDVGNIVL 9 Unmodified _KLDVGNIVL_ 0 0 0 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 486.82086181640625 2 485.800217 969.585882 0.11072 5.379E-05 0.18812 9.1387E-05 0.29884 0.00014518 485.8002385401463 142.28 0.77182 142.28 141.85 142.62 0 53 21 3 0 0 0 0.13201 1 28358 28358 74.216 62.466 1 11115000 23441 2179 15463 15468 23256 23256 0.09987217482705546 KLEAPRKS 8 Unmodified _KLEAPRKS_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1091Lfs*4|1|0.38|ENSG00000116641|chr1:62539572-62539572|A/-|frameshift_variant;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2381286621094 2 464.782359 927.550165 0.081289 3.7782E-05 -0.65006 -0.00030214 -0.56877 -0.00026435 464.7820747786989 32.533 0.35203 30.303 30.082 30.434 -2.2305 13 9 2 0 0 0 0.97888 1 5929 5929 18.146 6.5061 1 445820 23442 2937 15464 15469 23257 23257 0.08349180025709302 KLEDILQEV 9 Unmodified _KLEDILQEV_ 0 0 0 nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78173828125 2 543.805697 1085.59684 0.33749 0.00018353 1.0429 0.00056716 1.3804 0.00075069 543.8059183272659 151.36 0.42015 146.61 146.36 146.78 -4.7523 17 11 2 0 0 0 0.35556 1 30025 30025 12.241 11.559 1 1562800 23443 12218 15465 15470 23258 23258 0.05746575066336845 KLEDILQEV 9 Unmodified _KLEDILQEV_ 0 0 0 nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.785888671875 2 543.805697 1085.59684 NaN NaN NaN NaN NaN NaN NaN 151.91 1 146.68 146.18 147.18 -5.2365 0 0 0 0.18489 1 29449 29449 22.621 19.989 1 23444 12218 15465 15470 23259 23259 0.05746575066336845 KLEEFLSN 8 Unmodified _KLEEFLSN_ 0 0 0 REV__nc|ENSG00000162929|Q6NSI8-3|SANBR REV__nc|ENSG00000162929|Q6NSI8-3|SANBR MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2598876953125 2 490.258382 978.502212 0.14743 7.2278E-05 -1.0595 -0.00051941 -0.91204 -0.00044713 490.25830794704655 19.051 1.2407 19.051 18.687 19.928 0 83 35 4 0 0 0 8448 1 3075 3075 6.2058 0 1 45589000 + 23445 17542 15466 15471 23260 23260 0.012100613149982564 KLEEIIHQI 9 Unmodified _KLEEIIHQI_ 0 0 0 nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.222900390625 3 374.888763 1121.64446 0.27593 0.00010344 -0.52653 -0.00019739 -0.2506 -9.3946E-05 374.88852190944095 101.53 1.1576 101.53 101.01 102.17 0 90 32 4 0 0 0 0.0046473 3 19898 19850;19898;19962 114.5 35.07 1 15151000 23446 2888 15467 15472 23261;23262;23263 23262 0.08850274057203933 KLEEIIHQI 9 Unmodified _KLEEIIHQI_ 0 0 0 nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.222900390625 3 374.888763 1121.64446 -0.47911 -0.00017961 0.49997 0.00018743 0.020864 7.8216E-06 374.88891027660276 105.03 1.0209 100.81 100.4 101.42 -4.2183 88 28 4 0 0 0 0.055054 2 20738 20600;20738 68.76 17.272 1 24429000 23447 2888 15467 15472 23264;23265 23265 0.08850274057203933 KLEEIIHQI 9 Unmodified _KLEEIIHQI_ 0 0 0 nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2228698730469 3 374.888763 1121.64446 0.11044 4.1403E-05 -0.20755 -7.7807E-05 -0.097106 -3.6404E-05 374.8886313329165 105.32 1.0151 100.94 100.46 101.47 -4.3764 86 28 4 0 0 0 0.0021965 3 20222 20094;20098;20222 118.21 29.846 1 19703000 23448 2888 15467 15472 23266;23267;23268 23268 0.08850274057203933 KLEEIIHQI 9 Unmodified _KLEEIIHQI_ 0 0 0 nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2229309082031 3 374.888763 1121.64446 0.068818 2.5799E-05 -0.23486 -8.8045E-05 -0.16604 -6.2246E-05 374.88861943279613 104.98 1.2667 100.92 100.52 101.78 -4.0543 103 35 4 0 0 0 0.010905 2 20248 20248;20286 102.55 27.777 1 22710000 23449 2888 15467 15472 23269;23270 23269 0.08850274057203933 KLEILLIIQP 10 Unmodified _KLEILLIIQP_ 0 0 0 REV__ENST00000461177.1_1_9:107526521-107531179:+|nuORF REV__ENST00000461177.1_1_9:107526521-107531179:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2628784179688 2 590.389199 1178.76385 NaN NaN NaN NaN NaN NaN NaN 138.49 1 138.49 137.99 138.99 0 0 0 0 0.22588 1 27497 27497 3.5965 0.31518 1 + 23450 21891 15468 15473 23271 23271 0.1816146768192084 KLELGVLGQ 9 Unmodified _KLELGVLGQ_ 0 0 0 REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7322998046875 2 478.792392 955.570232 0.1141 5.4632E-05 -0.071791 -3.4373E-05 0.042314 2.0259E-05 478.7923386145703 96.482 0.62435 92.247 91.915 92.539 -4.2348 31 17 2 0 0 0 0.30909 1 18430 18430 28.495 5.7582 1 3376900 + 23451 19886 15469 15474 23272 23272 0.09066930965673237 KLELGVLGQ 9 Unmodified _KLELGVLGQ_ 0 0 0 REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.792392 955.570232 -0.2777 -0.00013296 0.47041 0.00022523 0.19271 9.2269E-05 478.7925428494874 92.503 0.5581 92.503 92.191 92.749 0 0.16496 0.0003984 NaN 28.495 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1595800 + 23452 19886 15469 15474 0.09066930965673237 KLELGVLGQ 9 Unmodified _KLELGVLGQ_ 0 0 0 REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.792392 955.570232 0.054036 2.5872E-05 -0.034072 -1.6314E-05 0.019964 9.5585E-06 478.79228711635756 96.363 0.57935 92.313 91.925 92.505 -4.0496 -0.024841 -8.4683E-05 NaN 28.495 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1870300 + 23453 19886 15469 15474 0.09066930965673237 KLEPKRTG 8 Unmodified _KLEPKRTG_ 0 0 0 ZNF518B|p.T403Nfs*7|1|0.39|ENSG00000178163|chr4:10445121-10445122|-/T|frameshift_variant;ENSG00000178163|ENST00000326756|ZNF518B ZNF518B|p.T403Nfs*7|1|0.39|ENSG00000178163|chr4:10445121-10445122|-/T|frameshift_variant ZNF518B|p.T403Nfs*7|1|0.39|ENSG00000178163|chr4:10445121-10445122|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2398376464844 2 464.782359 927.550165 0.45077 0.00020951 -0.3878 -0.00018024 0.062964 2.9264E-05 464.7821747462016 32.466 0.41597 30.317 30.071 30.487 -2.1483 13 11 2 0 0 0 0.75713 1 5655 5655 6.2058 1.4498 1 505480 23454 6561 15470 15475 23273 23273 0.08349180025697933 KLESMRQQQP 10 Unmodified _KLESMRQQQP_ 0 0 0 ENST00000494684.1_1_1:7897044-7902812:+|nuORF;nc|ENSG00000049246|P56645|PER3;ENSG00000049246|ENST00000377532|PER3 ENST00000494684.1_1_1:7897044-7902812:+|nuORF ENST00000494684.1_1_1:7897044-7902812:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7715454101562 2 622.824429 1243.63431 NaN NaN NaN NaN NaN NaN NaN 156.39 1 151.6 151.1 152.1 -4.7885 0 0 0 0.22588 1 31097 31097 12.241 0 1 23455 1236 15471 15476 23274 23274 0.022233430603137094 KLFAKHIKV 9 Unmodified _KLFAKHIKV_ 0 0 0 ENST00000479555.1_1_3:99885204-99890767:+|nuORF;nc|ENSG00000184220|Q9BQ75-2|CMSS1;ENSG00000184220|ENST00000421999|CMSS1 ENST00000479555.1_1_3:99885204-99890767:+|nuORF ENST00000479555.1_1_3:99885204-99890767:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.5018310546875 3 361.906088 1082.69644 -0.6217 -0.000225 0.78362 0.0002836 0.16192 5.86E-05 361.9063492636202 35.859 0.61074 33.466 33.091 33.701 -2.3938 25 16 2 0 0 0 0.074448 1 6603 6603 52.268 40.028 1 1339400 23456 6897 15472 15477 23275 23275 0.1583948226159464 KLFAKHIKV 9 Unmodified _KLFAKHIKV_ 0 0 0 ENST00000479555.1_1_3:99885204-99890767:+|nuORF;nc|ENSG00000184220|Q9BQ75-2|CMSS1;ENSG00000184220|ENST00000421999|CMSS1 ENST00000479555.1_1_3:99885204-99890767:+|nuORF ENST00000479555.1_1_3:99885204-99890767:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 362.50201416015625 3 361.906088 1082.69644 0.15092 5.4617E-05 0.13751 4.9765E-05 0.28842 0.00010438 361.90610058415547 35.772 0.516 33.519 33.195 33.711 -2.2527 24 14 2 0 0 0 0.074448 1 6302 6302 59.368 50.455 1 1225100 23457 6897 15472 15477 23276 23276 0.1583948226159464 KLFAKHIKV 9 Unmodified _KLFAKHIKV_ 0 0 0 ENST00000479555.1_1_3:99885204-99890767:+|nuORF;nc|ENSG00000184220|Q9BQ75-2|CMSS1;ENSG00000184220|ENST00000421999|CMSS1 ENST00000479555.1_1_3:99885204-99890767:+|nuORF ENST00000479555.1_1_3:99885204-99890767:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 361.906088 1082.69644 -0.2286 -8.2732E-05 0.64118 0.00023205 0.41258 0.00014932 361.906281957471 33.471 0.37981 33.471 33.2 33.58 0 0.024013 0.00011598 NaN 52.268 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1139600 23458 6897 15472 15477 0.1583948226159464 KLFAKHIKV 9 Unmodified _KLFAKHIKV_ 0 0 0 ENST00000479555.1_1_3:99885204-99890767:+|nuORF;nc|ENSG00000184220|Q9BQ75-2|CMSS1;ENSG00000184220|ENST00000421999|CMSS1 ENST00000479555.1_1_3:99885204-99890767:+|nuORF ENST00000479555.1_1_3:99885204-99890767:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 361.906088 1082.69644 -0.37801 -0.00013681 0.59562 0.00021556 0.21761 7.8755E-05 361.90630510652375 35.61 0.73336 33.334 33.037 33.77 -2.2766 -0.11377 6.6515E-05 NaN 52.268 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1315500 23459 6897 15472 15477 0.1583948226159464 KLFASPKLHY 10 Unmodified _KLFASPKLHY_ 0 0 0 REV__ENSG00000135540|ENST00000343505|NHSL1 REV__ENSG00000135540|ENST00000343505|NHSL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2771606445312 2 602.347866 1202.68118 NaN NaN NaN NaN NaN NaN NaN 51.999 1 51.999 51.499 52.499 0 0 0 0 0.22588 1 9876 9876 6.7232 0 1 + 23460 16276 15473 15478 23277 23277 0.08794570673762792 KLFDRSVDL 9 Unmodified _KLFDRSVDL_ 0 0 0 ENSG00000267796|ENST00000301159|LIN37;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000590706.6_1_19:36239538-36244244:+|nuORF ENSG00000267796|ENST00000301159|LIN37 ENSG00000267796|ENST00000301159|LIN37 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.789306640625 2 546.806031 1091.59751 0.21746 0.00011891 -0.18861 -0.00010313 0.028848 1.5774E-05 546.8059115483052 101.17 0.73083 97.008 96.564 97.295 -4.1594 58 20 4 0 0 0 0.33094 1 19908 19908 29.841 4.8496 1 6871600 23461 7990 15474 15479 23278 23278 0.05537414506034111 KLFDRSVDL 9 Unmodified _KLFDRSVDL_ 0 0 0 ENSG00000267796|ENST00000301159|LIN37;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000590706.6_1_19:36239538-36244244:+|nuORF ENSG00000267796|ENST00000301159|LIN37 ENSG00000267796|ENST00000301159|LIN37 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7887573242188 2 546.806031 1091.59751 0.33313 0.00018216 -0.25026 -0.00013684 0.082869 4.5313E-05 546.8058049444979 101.27 0.78251 96.975 96.572 97.354 -4.297 54 22 4 0 0 0 0.33094 1 19378 19378 29.841 5.82 1 6928800 23462 7990 15474 15479 23279 23279 0.05537414506034111 KLFDRSVDL 9 Unmodified _KLFDRSVDL_ 0 0 0 ENSG00000267796|ENST00000301159|LIN37;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000590706.6_1_19:36239538-36244244:+|nuORF ENSG00000267796|ENST00000301159|LIN37 ENSG00000267796|ENST00000301159|LIN37 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.806031 1091.59751 0.36882 0.00020167 -0.19846 -0.00010852 0.17036 9.3157E-05 546.8058521264965 97.283 0.72914 97.283 96.979 97.709 0 0.22227 6.5232E-05 NaN 29.841 52 20 3 NaN NaN NaN NaN 0 NaN NaN 0 9651500 23463 7990 15474 15479 0.05537414506034111 KLFDRSVDL 9 Unmodified _KLFDRSVDL_ 0 0 0 ENSG00000267796|ENST00000301159|LIN37;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000590706.6_1_19:36239538-36244244:+|nuORF ENSG00000267796|ENST00000301159|LIN37 ENSG00000267796|ENST00000301159|LIN37 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.806031 1091.59751 0.45513 0.00024887 -0.3687 -0.00020161 0.086426 4.7258E-05 546.805777784619 100.97 0.80064 96.978 96.619 97.42 -3.9895 -0.083006 -0.00012095 NaN 29.841 50 22 3 NaN NaN NaN NaN 0 NaN NaN 0 6935700 23464 7990 15474 15479 0.05537414506034111 KLFEDTKYTTL 11 Unmodified _KLFEDTKYTTL_ 0 0 0 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES;ENST00000485009.1_1_7:115863047-115889401:+|nuORF;ENST00000461440.5_1_7:115850593-115889401:+|nuORF nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.76055908203125 3 453.578254 1357.71293 0.63181 0.00028658 -0.71619 -0.00032485 -0.084381 -3.8273E-05 453.5779938290789 103.03 0.58707 103.03 102.62 103.2 0 36 16 3 0 0 0 0.54604 1 20271 20271 10.016 6.944 1 3070500 23465 3911 15475 15480 23280 23280 0.048384738463710164 KLFEDTKYTTL 11 Unmodified _KLFEDTKYTTL_ 0 0 0 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES;ENST00000485009.1_1_7:115863047-115889401:+|nuORF;ENST00000461440.5_1_7:115850593-115889401:+|nuORF nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.74798583984375 3 453.578254 1357.71293 -0.074019 -3.3573E-05 -0.04153 -1.8837E-05 -0.11555 -5.241E-05 453.57833134007075 107.19 0.62045 102.78 102.47 103.09 -4.4121 39 17 3 0 0 0 0.75092 1 20607 20607 8.2864 2.8837 1 3020700 23466 3911 15475 15480 23281 23281 0.048384738463710164 KLFEDTKYTTL 11 Unmodified _KLFEDTKYTTL_ 0 0 0 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES;ENST00000485009.1_1_7:115863047-115889401:+|nuORF;ENST00000461440.5_1_7:115850593-115889401:+|nuORF nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.756103515625 3 453.578254 1357.71293 0.67163 0.00030464 -0.57259 -0.00025972 0.099035 4.492E-05 453.5780022941636 106.82 0.79426 102.73 102.43 103.22 -4.0917 45 22 3 0 0 0 0.62477 1 20585 20585 16.838 12.122 1 2557700 23467 3911 15475 15480 23282 23282 0.048384738463710164 KLFEKKYSV 9 Unmodified _KLFEKKYSV_ 0 0 0 nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B nc|ENSG00000115750|Q53T94-3|TAF1B nc|ENSG00000115750|Q53T94-3|TAF1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21893310546875 3 381.225375 1140.6543 0.15389 5.8667E-05 -0.079679 -3.0376E-05 0.074211 2.8291E-05 381.2252979490007 44.607 0.56108 44.607 44.288 44.849 0 35 15 3 0 0 0 0.58921 1 8404 8404 8.1555 3.2585 1 2663300 23468 2881 15476 15481 23283 23283 0.08959462062557577 KLFEKKYSV 9 Unmodified _KLFEKKYSV_ 0 0 0 nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B nc|ENSG00000115750|Q53T94-3|TAF1B nc|ENSG00000115750|Q53T94-3|TAF1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20953369140625 3 381.225375 1140.6543 -0.28242 -0.00010767 0.4445 0.00016946 0.16208 6.1789E-05 381.5599199684438 47.444 0.55509 44.575 44.321 44.876 -2.869 36 15 3 0 0 0 0.47965 1 8934 8934 20.871 5.914 1 3405700 23469 2881 15476 15481 23284 23284 0.08959462062557577 KLFEKKYSV 9 Unmodified _KLFEKKYSV_ 0 0 0 nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B nc|ENSG00000115750|Q53T94-3|TAF1B nc|ENSG00000115750|Q53T94-3|TAF1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2050476074219 3 381.225375 1140.6543 -0.76411 -0.0002913 1.0988 0.00041888 0.33465 0.00012758 381.22575337250856 47.493 0.75564 44.544 44.26 45.016 -2.9499 41 21 3 0 0 0 0.19452 1 8666 8666 37.771 15.113 1 2604100 23470 2881 15476 15481 23285 23285 0.08959462062557577 KLFESHFWSFR 11 Unmodified _KLFESHFWSFR_ 0 0 0 REV__ENSG00000203908|ENST00000370367|KHDC3L REV__ENSG00000203908|ENST00000370367|KHDC3L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3765869140625 2 742.377686 1482.74082 NaN NaN NaN NaN NaN NaN NaN 120.95 1 116.27 115.77 116.77 -4.6873 0 0 0 0.22632 1 23220 23220 0.0059557 0 1 + 23471 19503 15477 15482 23286 23286 0.018758416171067438 KLFFRDYY 8 Unmodified _KLFFRDYY_ 0 0 0 REV__tr|U7SUB8|U7SUB8_FUSNU5-formyltetrahydrofolatecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01094PE=3SV=1 REV__tr|U7SUB8|U7SUB8_FUSNU5-formyltetrahydrofolatecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01094PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3194580078125 2 576.297842 1150.58113 NaN NaN NaN NaN NaN NaN NaN 139.08 1 134.24 133.74 134.74 -4.8492 0 0 0 0.23538 1 26812 26812 0.68139 0.27313 1 + 23472 25156 15478 15483 23287 23287 0.011863333399332987 KLFIGGLNV 9 Unmodified _KLFIGGLNV_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2451477050781 2 480.797478 959.580402 0.18532 8.9103E-05 -0.04937 -2.3737E-05 0.13595 6.5366E-05 480.79739998063934 156.42 0.88069 151.63 151.22 152.1 -4.7885 73 24 4 0 0 0 0.16619 3 31046 31041;31046;31171 41.84 5.7954 1 19046000 23473 6537 15479 15484 23288;23289;23290 23289 0.09899538690910958 KLFIGGLNV 9 Unmodified _KLFIGGLNV_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2540283203125 2 480.797478 959.580402 0.19051 9.1596E-05 -0.024526 -1.1792E-05 0.16598 7.9804E-05 480.7973713550254 157.21 0.87408 151.92 151.38 152.25 -5.2854 63 24 3 0 0 0 0.041554 1 30495 30495 74.929 11.366 1 12490000 23474 6537 15479 15484 23291 23291 0.09899538690910958 KLFIGGLNV 9 Unmodified _KLFIGGLNV_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2432861328125 2 480.797478 959.580402 0.35981 0.000173 -0.079307 -3.813E-05 0.28051 0.00013487 480.79735532804057 157.14 0.91541 151.87 151.37 152.29 -5.2712 66 25 3 0 0 0 0.010349 1 30475 30475 103.75 29.352 1 13607000 23475 6537 15479 15484 23292 23292 0.09899538690910958 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7745361328125 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 75.071 1 75.071 74.571 75.571 0 0 0 0 2.8426 1 14576 14576 0.0013812 0 1 + 23476 25172 15480 15485 23293 23293 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7817993164062 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 87.654 1 87.654 87.154 88.154 0 0 0 0 0.22588 1 17108 17108 1.6526 0 1 + 23477 25172 15480 15485 23294 23294 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7589111328125 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 87.693 1 87.693 87.193 88.193 0 0 0 0 2.8426 1 17117 17117 0.0013812 0 1 + 23478 25172 15480 15485 23295 23295 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7578125 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 90.383 1 90.383 89.883 90.883 0 0 0 0 2.8426 1 17655 17655 0.0013812 0 1 + 23479 25172 15480 15485 23296 23296 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7819213867188 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 160.24 1 160.24 159.74 160.74 0 0 0 0 0.22588 1 32176 32176 0.35063 0 1 + 23480 25172 15480 15485 23297 23297 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7667846679688 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 169.98 1 165.19 164.69 165.69 -4.7898 0 0 0 2.8426 1 34471 34471 0.0013812 0 1 + 23481 25172 15480 15485 23298 23298 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7667846679688 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 170 1 165.21 164.71 165.71 -4.7898 0 0 0 0.22588 1 34474 34474 0.35063 0 1 + 23482 25172 15480 15485 23299 23299 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.9457397460938 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 170.25 1 165.46 164.96 165.96 -4.7898 0 0 0 2.8426 1 34540 34540 0.0013812 0 1 + 23483 25172 15480 15485 23300 23300 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7575073242188 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 89.635 1 85.591 85.091 86.091 -4.0443 0 0 0 2.8426 1 17081 17081 0.0013812 0 1 + 23484 25172 15480 15485 23301 23301 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7706909179688 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 89.659 1 85.615 85.115 86.115 -4.0443 0 0 0 2.8426 1 17085 17085 0.0013812 0 1 + 23485 25172 15480 15485 23302 23302 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7548217773438 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 90.431 1 86.387 85.887 86.887 -4.0443 0 0 0 0.22588 1 17227 17227 1.6526 0 1 + 23486 25172 15480 15485 23303 23303 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7548217773438 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 93.234 1 89.09 88.59 89.59 -4.1435 0 0 0 0.22588 1 17769 17769 0.40072 0 1 + 23487 25172 15480 15485 23304 23304 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7517700195312 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 114.28 1 109.73 109.23 110.23 -4.555 0 0 0 0.22588 1 21942 21942 0 0 1 + 23488 25172 15480 15485 23305 23305 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.77001953125 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 148.57 1 143.41 142.91 143.91 -5.1557 0 0 0 2.8426 1 28768 28768 0.0013812 0 1 + 23489 25172 15480 15485 23306 23306 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.77001953125 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 148.58 1 143.43 142.93 143.93 -5.1557 0 0 0 0.22588 1 28770 28770 0.35063 0 1 + 23490 25172 15480 15485 23307 23307 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7782592773438 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 93.246 1 89.402 88.902 89.902 -3.844 0 0 0 0.22588 1 17875 17875 0 0 1 + 23491 25172 15480 15485 23308 23308 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7698364257812 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 93.292 1 89.448 88.948 89.948 -3.844 0 0 0 2.8426 1 17887 17887 0 0 1 + 23492 25172 15480 15485 23309 23309 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7741088867188 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 121.19 1 116.66 116.16 117.16 -4.5305 0 0 0 2.8426 1 23335 23335 0.0013812 0 1 + 23493 25172 15480 15485 23310 23310 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7741088867188 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 121.2 1 116.67 116.17 117.17 -4.5305 0 0 0 0.22588 1 23336 23336 0 0 1 + 23494 25172 15480 15485 23311 23311 0.26221732460794556 KLFKVIKKLK 10 Unmodified _KLFKVIKKLK_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7650756835938 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 177.55 1 172.64 172.14 173.14 -4.9088 0 0 0 0.22588 1 35410 35410 0 0 1 + 23495 25172 15480 15485 23312 23312 0.26221732460794556 KLFNDAIRL 9 Unmodified _KLFNDAIRL_ 0 0 0 ENST00000486403.1_1_2:114398907-114399703:+|nuORF;ENST00000494909.5_1_2:114398907-114399703:+|nuORF;ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A ENST00000486403.1_1_2:114398907-114399703:+|nuORF ENST00000486403.1_1_2:114398907-114399703:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 364.1595458984375 3 363.885353 1088.63423 -0.49545 -0.00018029 0.67637 0.00024612 0.18092 6.5834E-05 363.8855687560814 126.31 0.76255 121.61 121.32 122.08 -4.6998 44 20 3 0 0 0 0.1428 1 24353 24353 43.982 31.741 1 2346100 23496 1604 15481 15486 23313 23313 0.09345711122591638 KLFNDAIRL 9 Unmodified _KLFNDAIRL_ 0 0 0 ENST00000486403.1_1_2:114398907-114399703:+|nuORF;ENST00000494909.5_1_2:114398907-114399703:+|nuORF;ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A ENST00000486403.1_1_2:114398907-114399703:+|nuORF ENST00000486403.1_1_2:114398907-114399703:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 363.885353 1088.63423 -0.14138 -5.1446E-05 0.27804 0.00010117 0.13666 4.9728E-05 363.8854159885986 126.12 0.7376 121.52 121.15 121.89 -4.5984 -0.030103 1.0454E-07 NaN 43.982 37 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2510800 23497 1604 15481 15486 0.09345711122591638 KLFNDAIRL 9 Unmodified _KLFNDAIRL_ 0 0 0 ENST00000486403.1_1_2:114398907-114399703:+|nuORF;ENST00000494909.5_1_2:114398907-114399703:+|nuORF;ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A ENST00000486403.1_1_2:114398907-114399703:+|nuORF ENST00000486403.1_1_2:114398907-114399703:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 363.885353 1088.63423 0.27408 9.9735E-05 -0.18039 -6.5642E-05 0.093691 3.4093E-05 363.88524682837243 126.31 0.84201 121.52 121.18 122.03 -4.7958 -0.031468 -0.00050034 NaN 43.982 40 23 3 NaN NaN NaN NaN 0 NaN NaN 0 2547100 23498 1604 15481 15486 0.09345711122591638 KLFNEFIQL 9 Unmodified _KLFNEFIQL_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3275756835938 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 168.03 1 168.03 167.53 168.53 0 0 0 0 6.8762E-08 1 34375 34375 99.799 3.688 1 23499 1353 15482 15487 23314 23314 0.06935175545504535 KLFNEFIQL 9 Unmodified _KLFNEFIQL_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3273315429688 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 169.08 1 164.29 163.79 164.79 -4.7898 0 0 0 0.046541 1 34221 34221 53.833 10.06 1 23500 1353 15482 15487 23315 23315 0.06935175545504535 KLFNEFIQL 9 Unmodified _KLFNEFIQL_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3267822265625 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 169.16 1 164.23 163.73 164.73 -4.9295 0 0 0 0.11549 1 33386 33386 54.068 47.582 1 23501 1353 15482 15487 23316 23316 0.06935175545504535 KLFNEFIQL 9 Unmodified _KLFNEFIQL_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3267822265625 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 169.18 1 164.25 163.75 164.75 -4.9295 0 0 0 0.00085866 1 33389 33389 78.728 27.098 1 23502 1353 15482 15487 23317 23317 0.06935175545504535 KLFQFLKLRKY 11 Unmodified _KLFQFLKLRKY_ 0 0 0 ENSG00000176907|ENST00000315792|TCIM ENSG00000176907|ENST00000315792|TCIM ENSG00000176907|ENST00000315792|TCIM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3773803710938 2 742.461022 1482.90749 NaN NaN NaN NaN NaN NaN NaN 170.97 1 166.18 165.68 166.68 -4.7898 0 0 0 0.23698 1 34732 34732 1.1933 0.12188 1 23503 6487 15483 15488 23318 23318 0.18535314512814693 KLFVINEV 8 Unmodified _KLFVINEV_ 0 0 0 ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF;ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1 ENST00000510834.1_1_5:34915843-34920030:+|nuORF ENST00000510834.1_1_5:34915843-34920030:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78228759765625 2 481.289485 960.564418 -0.0037217 -1.7912E-06 0.53851 0.00025918 0.53479 0.00025739 481.28963242520155 132.42 0.63156 132.42 132.16 132.79 0 30 17 2 0 0 0 0.54916 3 26154 26150;26154;26243 25.399 9.3168 1 3443600 23504 2744 15484 15489 23319;23320;23321 23320 0.08255832453983203 KLFVINEV 8 Unmodified _KLFVINEV_ 0 0 0 ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF;ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1 ENST00000510834.1_1_5:34915843-34920030:+|nuORF ENST00000510834.1_1_5:34915843-34920030:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7792663574219 2 481.289485 960.564418 0.05407 2.6023E-05 -0.10044 -4.8341E-05 -0.04637 -2.2318E-05 481.2894826071891 136.59 0.77408 131.95 131.53 132.31 -4.6399 40 21 3 0 0 0 0.64512 1 26970 26970 19.257 6.7254 1 2700900 23505 2744 15484 15489 23322 23322 0.08255832453983203 KLFVINEV 8 Unmodified _KLFVINEV_ 0 0 0 ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF;ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1 ENST00000510834.1_1_5:34915843-34920030:+|nuORF ENST00000510834.1_1_5:34915843-34920030:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.770751953125 2 481.289485 960.564418 0.090567 4.3589E-05 0.1491 7.1758E-05 0.23966 0.00011535 481.28958264352485 136.69 0.73518 131.78 131.44 132.18 -4.9051 31 20 2 0 0 0 0.88497 1 26334 26334 10.074 3.8681 1 2469400 23506 2744 15484 15489 23323 23323 0.08255832453983203 KLFVINEV 8 Unmodified _KLFVINEV_ 0 0 0 ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF;ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1 ENST00000510834.1_1_5:34915843-34920030:+|nuORF ENST00000510834.1_1_5:34915843-34920030:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24078369140625 2 481.289485 960.564418 0.16613 7.9955E-05 0.43042 0.00020715 0.59654 0.00028711 481.2896048789138 136.85 0.65695 132.01 131.65 132.31 -4.84 29 18 2 0 0 0 0.8748 1 26343 26343 14.838 14.211 1 2085000 23507 2744 15484 15489 23324 23324 0.08255832453983203 KLFWYLLQRRF 11 Unmodified _KLFWYLLQRRF_ 0 0 0 REV__nc|ENSG00000100979|P55058-2|PLTP REV__nc|ENSG00000100979|P55058-2|PLTP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6954956054688 3 523.973273 1568.89799 NaN NaN NaN NaN NaN NaN NaN 65.486 1 62.028 61.528 62.528 -3.4581 0 0 0 0.22632 1 12255 12255 0.50596 0.41111 1 + 23508 23973 15485 15490 23325 23325 0.13629546227275569 KLFWYLLQRRF 11 Unmodified _KLFWYLLQRRF_ 0 0 0 REV__nc|ENSG00000100979|P55058-2|PLTP REV__nc|ENSG00000100979|P55058-2|PLTP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4032592773438 2 785.456271 1568.89799 NaN NaN NaN NaN NaN NaN NaN 91.301 1 87.206 86.706 87.706 -4.0946 0 0 0 0.23698 1 17397 17397 1.3295 0.9789 1 + 23509 23973 15485 15490 23326 23326 0.13629546227275569 KLGENVANI 9 Unmodified _KLGENVANI_ 0 0 0 nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7380676269531 2 479.271824 956.529095 -0.38532 -0.00018467 0.48665 0.00023324 0.10133 4.8565E-05 479.2720451809494 67.281 0.70746 67.281 67.014 67.721 0 39 19 3 0 0 0 0.14998 1 13028 13028 60.074 18.234 1 6418600 23510 1939 15486 15491 23327 23327 0.04909169926179402 KLGGYKKWYLW 11 Unmodified _KLGGYKKWYLW_ 0 0 0 REV__MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant REV__MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.27056884765625 3 481.271207 1440.79179 NaN NaN NaN NaN NaN NaN NaN 153.52 1 153.52 153.02 154.02 0 0 0 0 0.22632 1 30762 30762 0.03141 0 1 + 23511 14126 15487 15492 23328 23328 0.0890279066200037 KLGGYKKWYLW 11 Unmodified _KLGGYKKWYLW_ 0 0 0 REV__MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant REV__MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2427978515625 3 481.271207 1440.79179 NaN NaN NaN NaN NaN NaN NaN 113.96 1 109.64 109.14 110.14 -4.3136 0 0 0 0.22632 1 21948 21948 0.026206 0 1 + 23512 14126 15487 15492 23329 23329 0.0890279066200037 KLGHTDILVGV 11 Unmodified _KLGHTDILVGV_ 0 0 0 ENSG00000075914|ENST00000265564|EXOSC7;ENST00000461361.5_1_3:45016905-45052828:+|nuORF ENSG00000075914|ENST00000265564|EXOSC7 ENSG00000075914|ENST00000265564|EXOSC7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.32763671875 2 576.342781 1150.67101 0.67858 0.0003911 -1.0734 -0.00061863 -0.39478 -0.00022753 576.8439492849388 100.83 0.31966 100.83 100.55 100.87 0 10 8 2 0 0 0 0.47027 3 19748 19748;19767;19768 20.581 13.504 1 1107700 23513 1530 15488 15493 23330;23331;23332 23330 0.10169962948521061 KLGHTDILVGV 11 Unmodified _KLGHTDILVGV_ 0 0 0 ENSG00000075914|ENST00000265564|EXOSC7;ENST00000461361.5_1_3:45016905-45052828:+|nuORF ENSG00000075914|ENST00000265564|EXOSC7 ENSG00000075914|ENST00000265564|EXOSC7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3197021484375 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 104.37 1 100.15 99.647 100.65 -4.2183 0 0 0 0.13182 1 20529 20529 27.223 19.068 1 23514 1530 15488 15493 23333 23333 0.10169962948521061 KLGHTDILVGV 11 Unmodified _KLGHTDILVGV_ 0 0 0 ENSG00000075914|ENST00000265564|EXOSC7;ENST00000461361.5_1_3:45016905-45052828:+|nuORF ENSG00000075914|ENST00000265564|EXOSC7 ENSG00000075914|ENST00000265564|EXOSC7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3197021484375 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 104.38 1 100.17 99.667 100.67 -4.2183 0 0 0 0.17134 1 20532 20532 24.882 9.0344 1 23515 1530 15488 15493 23334 23334 0.10169962948521061 KLGHTDILVGV 11 Unmodified _KLGHTDILVGV_ 0 0 0 ENSG00000075914|ENST00000265564|EXOSC7;ENST00000461361.5_1_3:45016905-45052828:+|nuORF ENSG00000075914|ENST00000265564|EXOSC7 ENSG00000075914|ENST00000265564|EXOSC7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3170776367188 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 104.35 1 100.01 99.506 100.51 -4.346 0 0 0 0.1871 1 19991 19991 21.59 13.146 1 23516 1530 15488 15493 23335 23335 0.10169962948521061 KLGHTDILVGV 11 Unmodified _KLGHTDILVGV_ 0 0 0 ENSG00000075914|ENST00000265564|EXOSC7;ENST00000461361.5_1_3:45016905-45052828:+|nuORF ENSG00000075914|ENST00000265564|EXOSC7 ENSG00000075914|ENST00000265564|EXOSC7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3224487304688 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 104.58 1 100.23 99.731 100.73 -4.346 0 0 0 0.1871 1 20035 20035 22.109 13.357 1 23517 1530 15488 15493 23336 23336 0.10169962948521061 KLGHTDILVGV 11 Unmodified _KLGHTDILVGV_ 0 0 0 ENSG00000075914|ENST00000265564|EXOSC7;ENST00000461361.5_1_3:45016905-45052828:+|nuORF ENSG00000075914|ENST00000265564|EXOSC7 ENSG00000075914|ENST00000265564|EXOSC7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.329833984375 2 576.342781 1150.67101 0.71308 0.00041098 -3.1719 -0.0018281 -2.4589 -0.0014171 576.3422354239234 104.25 0.35658 100.19 99.949 100.31 -4.0543 10 9 2 0 0 0 0.36112 2 20060 20019;20060 16.566 9.9355 1 964990 23518 1530 15488 15493 23337;23338 23338 0.10169962948521061 KLGKITFI 8 Unmodified _KLGKITFI_ 0 0 0 ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF ENSG00000070010|ENST00000263202|UFD1 ENSG00000070010|ENST00000263202|UFD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.9039001464844 2 460.302396 918.590239 -0.26709 -0.00012294 0.47731 0.0002197 0.21022 9.6763E-05 460.30259278634554 112.84 0.78152 108.39 107.98 108.76 -4.4539 33 21 2 0 0 0 8448 1 22231 22231 64.86 31.267 1 1781300 23519 1423 15489 15494 23339 23339 0.12768726696253907 KLGKITFI 8 Unmodified _KLGKITFI_ 0 0 0 ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF ENSG00000070010|ENST00000263202|UFD1 ENSG00000070010|ENST00000263202|UFD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24359130859375 2 460.302396 918.590239 0.57671 0.00026546 -0.22805 -0.00010497 0.34866 0.00016049 460.30222222215804 112.7 0.72861 108.43 108.01 108.74 -4.2725 40 20 3 0 0 0 8448 1 21721 21721 15.478 5.4046 1 1561100 23520 1423 15489 15494 23340 23340 0.12768726696253907 KLGLTKFL 8 Unmodified _KLGLTKFL_ 0 0 0 REV__tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1 REV__tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2347717285156 2 460.302396 918.590239 -0.024639 -1.1341E-05 0.18457 8.4957E-05 0.15993 7.3616E-05 460.30237332821997 112.89 0.70897 108.36 108.01 108.72 -4.5259 32 19 2 0 0 0 0.31943 1 21650 21650 62.573 3.8939 1 1771000 + 23521 25236 15490 15495 23341 23341 0.12768726696276644 KLGLVQKV 8 Unmodified _KLGLVQKV_ 0 0 0 ENSG00000140455|ENST00000380324|USP3;nc|ENSG00000140455|Q9Y6I4-2|USP3 ENSG00000140455|ENST00000380324|USP3 ENSG00000140455|ENST00000380324|USP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 443.8023681640625 2 442.80002 883.585488 0.18138 8.0314E-05 -0.034562 -1.5304E-05 0.14682 6.501E-05 442.79994452732825 53.723 0.64359 53.723 53.354 53.998 0 43 17 3 0 0 0 8448 1 10207 10207 35.996 18.947 1 7005500 23522 4301 15491 15496 23342 23342 0.13903842553509094 KLGNFFINEA 10 Unmodified _KLGNFFINEA_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3194580078125 2 576.806031 1151.59751 0.26174 0.00015097 -0.63168 -0.00036435 -0.36994 -0.00021338 576.8060245173424 139.04 0.42157 134.19 134.04 134.46 -4.8492 21 11 3 0 0 0 0.72607 1 26816 26816 24.991 10.586 1 2073800 23523 4612 15492 15497 23343 23343 0.027774145060448063 KLGPDDVSV 9 Unmodified _KLGPDDVSV_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2488708496094 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 71.31 1 68.061 67.561 68.561 -3.2492 0 0 0 0.22519 1 13881 13881 16.149 1.5674 1 23524 2773 15493 15498 23344 23344 0.01945774797957256 KLGPEGELL 9 Unmodified _KLGPEGELL_ 0 0 0 nc|ENSG00000105281|Q15758-3|SLC1A5;nc|ENSG00000105281|Q15758-2|SLC1A5;ENSG00000105281|ENST00000542575|SLC1A5 nc|ENSG00000105281|Q15758-3|SLC1A5 nc|ENSG00000105281|Q15758-3|SLC1A5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7311706542969 2 478.276575 954.538597 0.53227 0.00025457 -0.42819 -0.00020479 0.10408 4.9778E-05 478.2763068669277 102.45 1.0941 98.427 97.936 99.03 -4.0212 90 30 4 0 0 0 0.036295 1 19672 19672 67.187 15.923 1 39948000 23525 2293 15494 15499 23345 23345 0.0595093821170849 KLGSGRRV 8 Unmodified _KLGSGRRV_ 0 0 0 REV__ENST00000421201.1_1_2:45878724-45879071:+|nuORF REV__ENST00000421201.1_1_2:45878724-45879071:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.7761535644531 2 436.774868 871.535184 -0.034279 -1.4972E-05 0.15318 6.6907E-05 0.11891 5.1935E-05 436.7748445902824 148.74 1.0357 144.03 143.61 144.65 -4.7095 70 28 4 0 0 0 8448 1 29498 29498 0.25148 0 1 37828000 + 23526 21511 15495 15500 23346 23346 0.09427732948370249 KLGSGRRV 8 Unmodified _KLGSGRRV_ 0 0 0 REV__ENST00000421201.1_1_2:45878724-45879071:+|nuORF REV__ENST00000421201.1_1_2:45878724-45879071:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 436.774868 871.535184 0.16552 7.2296E-05 -0.023042 -1.0064E-05 0.14248 6.2232E-05 436.77478082623367 143.68 1.0296 143.68 143.27 144.3 0 -0.28696 -5.4868E-05 NaN 0.25148 76 29 4 NaN NaN NaN NaN 0 NaN NaN 0 37789000 + 23527 21511 15495 15500 0.09427732948370249 KLGSGRRV 8 Unmodified _KLGSGRRV_ 0 0 0 REV__ENST00000421201.1_1_2:45878724-45879071:+|nuORF REV__ENST00000421201.1_1_2:45878724-45879071:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.774868 871.535184 -0.034279 -1.4972E-05 0.15318 6.6907E-05 0.11891 5.1935E-05 436.7748445902824 148.74 1.0357 144.03 143.61 144.65 -4.7095 0.056573 9.9075E-05 NaN 0.25148 70 28 4 NaN NaN NaN NaN 0 NaN NaN 0 37828000 + 23528 21511 15495 15500 0.09427732948370249 KLGSGRRV 8 Unmodified _KLGSGRRV_ 0 0 0 REV__ENST00000421201.1_1_2:45878724-45879071:+|nuORF REV__ENST00000421201.1_1_2:45878724-45879071:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 436.774868 871.535184 0.088304 3.8569E-05 0.04813 2.1022E-05 0.13643 5.9591E-05 436.77480000128526 149.33 1.1462 144.13 143.64 144.78 -5.1994 0.16076 7.3048E-06 NaN 0.25148 94 32 4 NaN NaN NaN NaN 0 NaN NaN 0 48077000 + 23529 21511 15495 15500 0.09427732948370249 KLGSGRRV 8 Unmodified _KLGSGRRV_ 0 0 0 REV__ENST00000421201.1_1_2:45878724-45879071:+|nuORF REV__ENST00000421201.1_1_2:45878724-45879071:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 436.774868 871.535184 0.16529 7.2194E-05 -0.025266 -1.1036E-05 0.14002 6.1159E-05 436.77473821575063 149.11 1.3493 144.04 143.59 144.94 -5.0745 0.069623 -5.681E-05 NaN 0.25148 103 37 4 NaN NaN NaN NaN 0 NaN NaN 0 41679000 + 23530 21511 15495 15500 0.09427732948370249 KLHDVSRSMM 10 Unmodified _KLHDVSRSMM_ 0 0 0 REV__FAM171A1|p.E549K|1|0.11|ENSG00000148468|chr10:15213943-15213943|C/T|missense_variant REV__FAM171A1|p.E549K|1|0.11|ENSG00000148468|chr10:15213943-15213943|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2950439453125 2 602.302275 1202.59 NaN NaN NaN NaN NaN NaN NaN 128.71 1 128.71 128.21 129.21 0 0 0 0 0.22588 1 25420 25420 5.2969 0.066215 1 + 23531 23513 15496 15501 23347 23347 -0.0031938435754454986 KLHFKSHVYYF 11 Unmodified _KLHFKSHVYYF_ 0 0 0 ENSG00000152767|ENST00000319562|FARP1;nc|ENSG00000152767|Q9Y4F1-2|FARP1;ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENSG00000152767|ENST00000319562|FARP1;ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENSG00000152767|ENST00000319562|FARP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2647399902344 3 490.262712 1467.76631 NaN NaN NaN NaN NaN NaN NaN 44.973 1 44.973 44.473 45.473 0 0 0 0 0.22632 1 8444 8444 3.0723 2.9003 1 23532 4940;11653 15497 15502 23348 23348 0.05113316139568269 KLHFKSHVYYF 11 Unmodified _KLHFKSHVYYF_ 0 0 0 ENSG00000152767|ENST00000319562|FARP1;nc|ENSG00000152767|Q9Y4F1-2|FARP1;ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENSG00000152767|ENST00000319562|FARP1;ENST00000594346.1_1_13:99098688-99099072:+|nuORF ENSG00000152767|ENST00000319562|FARP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26361083984375 3 490.262712 1467.76631 NaN NaN NaN NaN NaN NaN NaN 77.149 1 77.149 76.649 77.649 0 0 0 0 0.22632 1 14996 14996 0.03141 0 1 23533 4940;11653 15497 15502 23349 23349 0.05113316139568269 KLHRIEEELRA 11 Unmodified _KLHRIEEELRA_ 0 0 0 REV__ENSG00000175084|ENST00000373960|DES REV__ENSG00000175084|ENST00000373960|DES MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2518615722656 3 465.268525 1392.78375 NaN NaN NaN NaN NaN NaN NaN 80.348 1 80.348 79.848 80.848 0 0 0 0 0.22632 1 15642 15642 3.0723 0 1 + 23534 18452 15498 15503 23350 23350 0.10306611674559463 KLHRKLTV 8 Unmodified _KLHRKLTV_ 0 0 0 ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-6|MIA2;nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2 ENSG00000150527|ENST00000640607|MIA2 ENSG00000150527|ENST00000640607|MIA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.22149658203125 3 332.222188 993.644734 NaN NaN NaN NaN NaN NaN NaN 117.25 1 112.77 112.27 113.27 -4.486 0 0 0 0.21486 1 23114 23114 1.6526 0 1 23535 4827 15499 15504 23351 23351 0.14765738567678 KLHRRRRWW 9 Unmodified _KLHRRRRWW_ 0 0 0 ENST00000297293.5_1_7:97832983-97833265:+|nuORF ENST00000297293.5_1_7:97832983-97833265:+|nuORF ENST00000297293.5_1_7:97832983-97833265:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2492370605469 3 465.277801 1392.81157 NaN NaN NaN NaN NaN NaN NaN 128.91 1 124.1 123.6 124.6 -4.817 0 0 0 0.19623 1 24746 24746 0.073264 0.071882 1 23536 8520 15500 15505 23352 23352 0.13088024235958073 KLIDDVHRL 9 Unmodified _KLIDDVHRL_ 0 0 0 ENST00000528744.5_1_11:126137442-126138699:-|nuORF;nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA ENST00000528744.5_1_11:126137442-126138699:-|nuORF ENST00000528744.5_1_11:126137442-126138699:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 370.1846923828125 3 370.220624 1107.64004 0.30696 0.00011364 -0.093693 -3.4687E-05 0.21326 7.8954E-05 370.2205733131455 71.886 0.7784 68.259 67.883 68.661 -3.6275 52 21 3 0 0 0 0.06955 1 13556 13556 96.367 65.663 1 7564800 23537 6819 15501 15506 23353 23353 0.09052809634272307 KLIDDVHRL 9 Unmodified _KLIDDVHRL_ 0 0 0 ENST00000528744.5_1_11:126137442-126138699:-|nuORF;nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA ENST00000528744.5_1_11:126137442-126138699:-|nuORF ENST00000528744.5_1_11:126137442-126138699:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 370.220624 1107.64004 -0.51775 -0.00019168 0.51212 0.0001896 -0.0056295 -2.0842E-06 370.2208428134152 68.55 0.78735 68.55 68.144 68.931 0 0.19889 0.00018434 NaN 96.367 47 21 3 NaN NaN NaN NaN 0 NaN NaN 0 11349000 23538 6819 15501 15506 0.09052809634272307 KLIDDVHRL 9 Unmodified _KLIDDVHRL_ 0 0 0 ENST00000528744.5_1_11:126137442-126138699:-|nuORF;nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA ENST00000528744.5_1_11:126137442-126138699:-|nuORF ENST00000528744.5_1_11:126137442-126138699:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 370.220624 1107.64004 -0.3756 -0.00013905 0.42971 0.00015909 0.054111 2.0033E-05 370.2207983113836 71.53 1.0962 68.281 67.53 68.626 -3.2492 -0.069932 9.2806E-05 NaN 96.367 66 30 3 NaN NaN NaN NaN 0 NaN NaN 0 8199700 23539 6819 15501 15506 0.09052809634272307 KLIDDVHRL 9 Unmodified _KLIDDVHRL_ 0 0 0 ENST00000528744.5_1_11:126137442-126138699:-|nuORF;nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA ENST00000528744.5_1_11:126137442-126138699:-|nuORF ENST00000528744.5_1_11:126137442-126138699:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 370.220624 1107.64004 -0.32719 -0.00012113 0.40817 0.00015111 0.08098 2.9981E-05 370.2207324316422 71.852 0.87904 68.314 67.834 68.713 -3.5385 -0.036992 6.888E-05 NaN 96.367 59 24 3 NaN NaN NaN NaN 0 NaN NaN 0 9169200 23540 6819 15501 15506 0.09052809634272307 KLIDKLDSL 9 Unmodified _KLIDKLDSL_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;DOCK4|p.K1325Nfs*6|1|0.17|ENSG00000128512|chr7:111765136-111765136|T/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0|DOCK4;ENST00000469898.1_7:111428716-111462476:-|nuORF nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2601928710938 2 522.818607 1043.62266 -0.78534 -0.00041059 0.91961 0.00048079 0.13427 7.0198E-05 522.8189739092984 108.91 0.52782 104.46 104.15 104.68 -4.4518 22 14 2 0 0 0 0.84094 1 20884 20884 9.544 1.3884 1 1203300 23541 3525 15502 15507 23354 23354 0.10259469308630287 KLIEDKKNV 9 Unmodified _KLIEDKKNV_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7794189453125 2 543.829506 1085.64446 0.029202 1.5881E-05 0.077924 4.2377E-05 0.10713 5.8258E-05 543.8294565962743 104.41 0.65157 100.19 99.857 100.51 -4.2183 47 18 4 0 0 0 0.16539 1 20505 20505 41.956 5.4494 1 6887800 + 23542 25172 15503 15508 23355 23355 0.10506274057183873 KLIEDKKNV 9 Unmodified _KLIEDKKNV_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7710571289062 2 543.829506 1085.64446 0.17282 9.3984E-05 -0.091953 -5.0007E-05 0.080866 4.3977E-05 543.8293972687368 104.6 0.68736 100.25 99.869 100.56 -4.346 46 19 3 0 0 0 0.13904 1 20020 20020 45.74 7.1251 1 6717000 + 23543 25172 15503 15508 23356 23356 0.10506274057183873 KLIEDKKNV 9 Unmodified _KLIEDKKNV_ 0 0 0 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7749633789062 2 543.829506 1085.64446 0.80134 0.00043579 -0.84286 -0.00045837 -0.041516 -2.2578E-05 543.8289810400602 104.35 0.77991 100.29 99.877 100.66 -4.0543 50 21 3 0 0 0 0.63326 1 20000 20000 10.8 2.644 1 6225900 + 23544 25172 15503 15508 23357 23357 0.10506274057183873 KLIESKHEV 9 Unmodified _KLIESKHEV_ 0 0 0 nc|ENSG00000186591|P62256-2|UBE2H;ENSG00000186591|ENST00000355621|UBE2H nc|ENSG00000186591|P62256-2|UBE2H nc|ENSG00000186591|P62256-2|UBE2H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2616577148438 2 541.813856 1081.61316 0.41453 0.0002246 -0.12223 -6.6226E-05 0.2923 0.00015837 541.8137524110698 19.86 0.34303 18.464 18.276 18.619 -1.3966 27 9 4 0 0 0 0.028912 1 3301 3301 75.571 29.831 1 7483400 23545 7068 15504 15509 23358 23358 0.07561701023087153 KLIESKHEV 9 Unmodified _KLIESKHEV_ 0 0 0 nc|ENSG00000186591|P62256-2|UBE2H;ENSG00000186591|ENST00000355621|UBE2H nc|ENSG00000186591|P62256-2|UBE2H nc|ENSG00000186591|P62256-2|UBE2H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.261962890625 2 541.813856 1081.61316 -0.24952 -0.0001352 0.58893 0.00031909 0.33941 0.0001839 541.8141091406826 19.759 0.34805 18.433 18.247 18.595 -1.3251 23 9 3 0 0 0 0.23009 1 3037 3037 47.594 12.662 1 7371900 23546 7068 15504 15509 23359 23359 0.07561701023087153 KLIESKHEV 9 Unmodified _KLIESKHEV_ 0 0 0 nc|ENSG00000186591|P62256-2|UBE2H;ENSG00000186591|ENST00000355621|UBE2H nc|ENSG00000186591|P62256-2|UBE2H nc|ENSG00000186591|P62256-2|UBE2H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2770385742188 2 541.813856 1081.61316 -0.83462 -0.00045221 1.0395 0.0005632 0.20484 0.00011099 541.814371837074 20.065 0.48283 18.43 18.227 18.71 -1.6351 30 13 4 0 0 0 0.1155 1 3053 3053 71.708 25.968 1 4811100 23547 7068 15504 15509 23360 23360 0.07561701023087153 KLIEVDDERKL 11 Unmodified _KLIEVDDERKL_ 0 0 0 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7569580078125 3 453.261036 1356.76128 -0.06951 -3.1506E-05 -0.25175 -0.00011411 -0.32126 -0.00014561 453.26082548939644 63.644 0.45085 63.644 63.401 63.852 0 17 12 2 0 0 0 0.8997 1 12239 12239 21.666 9.4385 1 2396400 23548 4069 15505 15510 23361 23361 0.09716967486269823 KLIEVDDERKL 11 Unmodified _KLIEVDDERKL_ 0 0 0 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 453.261036 1356.76128 0.22912 0.00010385 -0.16241 -7.3613E-05 0.066712 3.0238E-05 453.5954723864244 66.921 0.4556 63.424 63.148 63.603 -3.4965 0.0027076 8.0724E-05 NaN 34.674 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1103900 23549 4069 15505 15510 0.09716967486269823 KLIEVDDERKL 11 Unmodified _KLIEVDDERKL_ 0 0 0 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 453.261036 1356.76128 0.27063 0.00012267 -0.4314 -0.00019554 -0.16077 -7.2869E-05 453.26058001759935 66.582 0.51735 63.256 63.025 63.542 -3.3268 -0.16602 -0.00028504 NaN 34.674 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1357100 23550 4069 15505 15510 0.09716967486269823 KLIGDPNLEFV 11 Unmodified _KLIGDPNLEFV_ 0 0 0 ENST00000444720.1_1_13:21321226-21321529:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN ENST00000444720.1_1_13:21321226-21321529:-|nuORF ENST00000444720.1_1_13:21321226-21321529:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7752075195312 2 622.847896 1243.68124 0.4042 0.00025175 0.68596 0.00042725 1.0902 0.000679 622.8482501061931 150.58 0.55992 150.58 150.29 150.85 0 20 15 2 0 0 0 0.30222 1 30175 30175 49.527 13.4 1 2833700 23551 3718 15506 15511 23362 23362 0.0691452588307584 KLIGDPNLEFV 11 Unmodified _KLIGDPNLEFV_ 0 0 0 ENST00000444720.1_1_13:21321226-21321529:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN ENST00000444720.1_1_13:21321226-21321529:-|nuORF ENST00000444720.1_1_13:21321226-21321529:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7809448242188 2 622.847896 1243.68124 1.1123 0.00069278 -1.2655 -0.0007882 -0.15319 -9.5416E-05 622.8474728067645 155.4 0.75458 150.62 150.26 151.02 -4.7791 40 20 3 0 0 0 0.6627 1 30847 30847 35.612 21.997 1 5095100 23552 3718 15506 15511 23363 23363 0.0691452588307584 KLIGDPNLEFV 11 Unmodified _KLIGDPNLEFV_ 0 0 0 ENST00000444720.1_1_13:21321226-21321529:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN ENST00000444720.1_1_13:21321226-21321529:-|nuORF ENST00000444720.1_1_13:21321226-21321529:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7822875976562 2 622.847896 1243.68124 NaN NaN NaN NaN NaN NaN NaN 155.72 1 150.43 149.93 150.93 -5.2854 0 0 0 0.20951 1 30203 30203 16.566 10.834 1 23553 3718 15506 15511 23364 23364 0.0691452588307584 KLIGDPNLEFV 11 Unmodified _KLIGDPNLEFV_ 0 0 0 ENST00000444720.1_1_13:21321226-21321529:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN ENST00000444720.1_1_13:21321226-21321529:-|nuORF ENST00000444720.1_1_13:21321226-21321529:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.75244140625 2 622.847896 1243.68124 NaN NaN NaN NaN NaN NaN NaN 155.8 1 150.51 150.01 151.01 -5.2854 0 0 0 0.17134 1 30220 30220 24.882 5.5196 1 23554 3718 15506 15511 23365 23365 0.0691452588307584 KLIGDPNLEFV 11 Unmodified _KLIGDPNLEFV_ 0 0 0 ENST00000444720.1_1_13:21321226-21321529:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN ENST00000444720.1_1_13:21321226-21321529:-|nuORF ENST00000444720.1_1_13:21321226-21321529:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7525024414062 2 622.847896 1243.68124 0.60563 0.00037721 0.10906 6.793E-05 0.71469 0.00044514 622.8476189520801 155.91 0.59811 150.65 150.44 151.03 -5.2526 34 16 3 0 0 0 0.094861 1 30258 30258 57.108 36.693 1 3881900 23555 3718 15506 15511 23366 23366 0.0691452588307584 KLIGLYNQK 9 Unmodified _KLIGLYNQK_ 0 0 0 ENSG00000171724|ENST00000302536|VAT1L ENSG00000171724|ENST00000302536|VAT1L ENSG00000171724|ENST00000302536|VAT1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.2218017578125 3 359.553603 1075.63898 -0.054247 -1.9505E-05 0.054261 1.951E-05 1.3942E-05 5.0129E-09 359.55360695936395 122.53 1.5994 117.98 117.42 119.02 -4.5476 161 44 5 0 0 0 0.37458 1 24201 24201 1.2148 0 1 175600000 23556 6162 15507 15512 23367 23367 0.1041859526535518 KLIHQMRMRQQ 11 Unmodified _KLIHQMRMRQQ_ 0 0 0 REV__ENST00000323981.6_1_11:93469454-93470302:-|nuORF REV__ENST00000323981.6_1_11:93469454-93470302:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27215576171875 3 490.271107 1467.79149 -0.73132 -0.00035855 2.3868 0.0011702 1.6555 0.00081163 490.2724345351087 22.961 0.33203 21.173 21.026 21.358 -1.7886 17 9 3 0 0 0 0.79196 1 3663 3663 4.7159 0 1 432500 + 23557 20567 15508 15513 23368 23368 0.07630724398836719 KLIIIIKLRV 10 Unmodified _KLIIIIKLRV_ 0 0 0 REV__ENST00000468148.5_1_6:57086941-57087007:-|nuORF REV__ENST00000468148.5_1_6:57086941-57087007:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 604.9168090820312 2 604.944476 1207.8744 NaN NaN NaN NaN NaN NaN NaN 166.85 1 161.91 161.41 162.41 -4.948 0 0 0 0.22588 1 32760 32760 0.40072 0 1 + 23558 21993 15509 15514 23369 23369 0.27877732460774496 KLIKRLAFY 9 Unmodified _KLIKRLAFY_ 0 0 0 REV__ENSG00000204599|ENST00000396551|TRIM39 REV__ENSG00000204599|ENST00000396551|TRIM39 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.339111328125 2 576.368601 1150.72265 NaN NaN NaN NaN NaN NaN NaN 134.77 1 129.89 129.39 130.39 -4.8726 0 0 0 0.23508 1 25885 25885 0.6015 0 1 + 23559 19551 15510 15515 23370 23370 0.15331751433086538 KLILFHTYTWF 11 Unmodified _KLILFHTYTWF_ 0 0 0 RGS18|p.H26Lfs*22|1|0.04|ENSG00000150681|chr1:192158709-192158710|-/ATACTATTCCATACAT|frameshift_variant RGS18|p.H26Lfs*22|1|0.04|ENSG00000150681|chr1:192158709-192158710|-/ATACTATTCCATACAT|frameshift_variant RGS18|p.H26Lfs*22|1|0.04|ENSG00000150681|chr1:192158709-192158710|-/ATACTATTCCATACAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2696533203125 3 490.271096 1467.79146 NaN NaN NaN NaN NaN NaN NaN 135.62 1 135.62 135.12 136.12 0 0 0 0 0.22632 1 26867 26867 0.172 0 1 23560 25607 15511 15516 23371 23371 0.0762737094212298 KLILLITKLVH 11 Unmodified _KLILLITKLVH_ 0 0 0 REV__MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant REV__MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 645.9004516601562 2 645.947216 1289.87988 NaN NaN NaN NaN NaN NaN NaN 163.93 1 163.93 163.43 164.43 0 0 0 0 0.23698 1 33092 33092 1.3295 0.92882 1 + 23561 23878 15512 15517 23372 23372 0.24653411252575097 KLILLLKRRKQ 11 Unmodified _KLILLLKRRKQ_ 0 0 0 REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 470.33184814453125 3 470.332801 1407.97657 NaN NaN NaN NaN NaN NaN NaN 5.1532 1 5.1532 4.6532 5.6532 0 0 0 0 0.23698 1 228 228 0 0 1 + 23562 21988 15513 15518 23373 23373 0.288903985323941 KLILLLKRRKQ 11 Unmodified _KLILLLKRRKQ_ 0 0 0 REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 704.994140625 2 704.995563 1407.97657 NaN NaN NaN NaN NaN NaN NaN 176.79 1 176.79 176.29 177.29 0 0 0 0 0.22632 1 36624 36624 0 0 1 + 23563 21988 15513 15518 23374 23374 0.288903985323941 KLILLVIRPPV 11 Unmodified _KLILLVIRPPV_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1091Lfs*4|1|0.38|ENSG00000116641|chr1:62539572-62539572|A/-|frameshift_variant;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7780151367188 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 72.723 1 72.723 72.223 73.223 0 0 0 0 0.23698 1 14106 14106 1.3295 0.87119 1 23564 2937 15514 15519 23375 23375 0.24977428598162987 KLILVKSFKG 10 Unmodified _KLILVKSFKG_ 0 0 0 REV__ENST00000479971.1_1_12:72291642-72301148:+|nuORF REV__ENST00000479971.1_1_12:72291642-72301148:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 566.8052978515625 2 566.876259 1131.73797 NaN NaN NaN NaN NaN NaN NaN 166.04 1 166.04 165.54 166.54 0 0 0 0 2.8426 1 33772 33772 0.26539 0 1 + 23565 22158 15515 15520 23376 23376 0.17736618230264867 KLINQVNTI 9 Unmodified _KLINQVNTI_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2601318359375 2 521.816399 1041.61824 0.62919 0.00032832 -0.4924 -0.00025694 0.13679 7.1378E-05 521.81617254649 78.947 0.38257 78.947 78.749 79.132 0 16 10 2 0 0 0 0.77734 1 15381 15381 13.906 9.9617 1 1328400 23566 1518 15516 15521 23377 23377 0.09910004885705348 KLINQVNTI 9 Unmodified _KLINQVNTI_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2822265625 2 521.816399 1041.61824 -0.23112 -0.0001206 0.35364 0.00018454 0.12253 6.3936E-05 521.8165811651625 82.196 0.62801 78.638 78.307 78.935 -3.557 26 17 2 0 0 0 0.11032 1 16068 16068 52.268 8.4101 1 2033600 23567 1518 15516 15521 23378 23378 0.09910004885705348 KLINQVNTI 9 Unmodified _KLINQVNTI_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2611694335938 2 521.816399 1041.61824 -0.64456 -0.00033634 0.77506 0.00040444 0.13051 6.81E-05 521.8167723430128 82.604 0.65343 78.731 78.399 79.052 -3.8736 28 18 2 0 0 0 0.2219 2 15691 15691;15721 36.127 5.4905 1 1226000 23568 1518 15516 15521 23379;23380 23379 0.09910004885705348 KLINQVNTI 9 Unmodified _KLINQVNTI_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.260498046875 2 521.816399 1041.61824 -0.07598 -3.9648E-05 -0.11869 -6.1935E-05 -0.19467 -0.00010158 521.8164991393331 82.459 0.49051 78.76 78.515 79.006 -3.6985 27 13 3 0 0 0 0.34411 1 15751 15751 29.082 6.3453 1 1313300 23569 1518 15516 15521 23381 23381 0.09910004885705348 KLIPIVIKY 9 Unmodified _KLIPIVIKY_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7794799804688 2 543.867903 1085.72125 NaN NaN NaN NaN NaN NaN NaN 123.46 1 123.46 122.96 123.96 0 0 0 0 0.23508 1 24337 24337 4.3292 0 1 + 23570 19081 15517 15522 23382 23382 0.1818211734430406 KLISSYYNV 9 Unmodified _KLISSYYNV_ 0 0 0 nc|ENSG00000146842|Q96SK2-4|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209 nc|ENSG00000146842|Q96SK2-4|TMEM209 nc|ENSG00000146842|Q96SK2-4|TMEM209 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.794921875 2 543.795132 1085.57571 0.33006 0.00017948 -0.76609 -0.0004166 -0.43603 -0.00023711 543.7947577454911 96.936 0.66383 96.936 96.563 97.227 0 27 18 2 0 0 0 0.45059 1 18978 18978 22.658 4.5117 1 1863200 23571 4674 15518 15523 23383 23383 0.036346097574551095 KLISSYYNV 9 Unmodified _KLISSYYNV_ 0 0 0 nc|ENSG00000146842|Q96SK2-4|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209 nc|ENSG00000146842|Q96SK2-4|TMEM209 nc|ENSG00000146842|Q96SK2-4|TMEM209 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7957763671875 2 543.795132 1085.57571 0.24293 0.0001321 0.05027 2.7337E-05 0.2932 0.00015944 543.7951375762208 101.1 0.59512 96.936 96.529 97.125 -4.1594 27 16 2 0 0 0 0.35429 3 19825 19819;19825;19884 28.495 8.0409 1 1742800 23572 4674 15518 15523 23384;23385;23386 23385 0.036346097574551095 KLISSYYNV 9 Unmodified _KLISSYYNV_ 0 0 0 nc|ENSG00000146842|Q96SK2-4|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209 nc|ENSG00000146842|Q96SK2-4|TMEM209 nc|ENSG00000146842|Q96SK2-4|TMEM209 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79541015625 2 543.795132 1085.57571 0.32043 0.00017425 -0.16235 -8.8286E-05 0.15808 8.5961E-05 543.7949253598426 101.07 0.47322 96.773 96.572 97.045 -4.297 25 13 2 0 0 0 0.24263 1 19358 19358 34.932 10.911 1 2299100 23573 4674 15518 15523 23387 23387 0.036346097574551095 KLISSYYNV 9 Unmodified _KLISSYYNV_ 0 0 0 nc|ENSG00000146842|Q96SK2-4|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209 nc|ENSG00000146842|Q96SK2-4|TMEM209 nc|ENSG00000146842|Q96SK2-4|TMEM209 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7949829101562 2 543.795132 1085.57571 0.44363 0.00024124 -0.47929 -0.00026063 -0.035655 -1.9389E-05 543.7948381090305 100.78 0.62009 96.795 96.48 97.1 -3.9895 34 17 3 0 0 0 0.10083 2 19380 19328;19380 55.503 30.103 1 1932400 23574 4674 15518 15523 23388;23389 23389 0.036346097574551095 KLIVLPDFK 9 Unmodified _KLIVLPDFK_ 0 0 0 REV__ENSG00000183747|ENST00000573854|ACSM2A REV__ENSG00000183747|ENST00000573854|ACSM2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 358.2696228027344 3 358.230349 1071.66922 -0.21254 -7.6139E-05 0.26284 9.4157E-05 0.050298 1.8018E-05 358.2303881170815 142.26 0.5197 137.6 137.34 137.86 -4.656 25 14 2 0 0 0 0.5685 2 28128 28128;28150 15.248 10.8 1 3768300 + 23575 14204 15519 15524 23390;23391 23390 0.13624953930570882 KLIVLPDFK 9 Unmodified _KLIVLPDFK_ 0 0 0 REV__ENSG00000183747|ENST00000573854|ACSM2A REV__ENSG00000183747|ENST00000573854|ACSM2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 358.2696228027344 3 358.230349 1071.66922 -0.21254 -7.6139E-05 0.26284 9.4157E-05 0.050298 1.8018E-05 358.2303881170815 142.26 0.5197 137.6 137.34 137.86 -4.656 25 14 2 0 0 0 0.82357 1 28128 28128 15.248 3.0078 1 3768300 + 23576 14204 15519 15524 23392 23392 0.13624953930570882 KLIVLPDFK 9 Unmodified _KLIVLPDFK_ 0 0 0 REV__ENSG00000183747|ENST00000573854|ACSM2A REV__ENSG00000183747|ENST00000573854|ACSM2A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 358.230349 1071.66922 0.095201 3.4104E-05 -0.0097835 -3.5047E-06 0.085417 3.0599E-05 358.2302852472934 142.62 0.73047 137.59 137.27 138 -5.0261 -0.0092325 -0.0002699 NaN 15.248 36 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4039400 + 23577 14204 15519 15524 0.13624953930570882 KLIVLPDFK 9 Unmodified _KLIVLPDFK_ 0 0 0 REV__ENSG00000183747|ENST00000573854|ACSM2A REV__ENSG00000183747|ENST00000573854|ACSM2A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 358.230349 1071.66922 -0.40305 -0.00014438 0.46562 0.0001668 0.062572 2.2415E-05 358.23047015067095 142.51 0.77979 137.62 137.17 137.95 -4.8982 0.013032 0.00024101 NaN 15.248 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 3463100 + 23578 14204 15519 15524 0.13624953930570882 KLKAKPLLLQL 11 Unmodified _KLKAKPLLLQL_ 0 0 0 nc|ENSG00000164347|Q969S9-5|GFM2;GFM2|p.E537Sfs*4|1|0.07|ENSG00000164347|chr5:74730377-74730377|C/-|frameshift_variant;nc|ENSG00000164347|Q969S9-4|GFM2;nc|ENSG00000164347|Q969S9-2|GFM2;nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2 nc|ENSG00000164347|Q969S9-5|GFM2 nc|ENSG00000164347|Q969S9-5|GFM2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 632.9411010742188 2 632.939391 1263.86423 NaN NaN NaN NaN NaN NaN NaN 176.66 1 176.66 176.16 177.16 0 0 0 0 0.22632 1 36597 36597 0.00056442 0 1 23579 5539 15520 15525 23393 23393 0.24285124735570207 KLKCKSFKWYL 11 Unmodified _KLKCKSFKWYL_ 0 0 0 ENSG00000136542|ENST00000259056|GALNT5;ENST00000463418.5_1_2:158157328-158158798:+|nuORF ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77911376953125 3 481.944214 1442.81081 NaN NaN NaN NaN NaN NaN NaN 135.98 1 131.15 130.65 131.65 -4.8307 0 0 0 0.22632 1 26183 26183 0.172 0.14579 1 23580 4021 15521 15526 23394 23394 0.10712003961384653 KLKEYWYETFY 11 Unmodified _KLKEYWYETFY_ 0 0 0 REV__tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 REV__tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.384765625 2 785.384842 1568.75513 NaN NaN NaN NaN NaN NaN NaN 80.039 1 76.234 75.734 76.734 -3.8048 0 0 0 0.22632 1 15187 15187 0.094841 0.094841 1 + 23581 25232 15522 15527 23395 23395 -0.006495507452427773 KLKKIVKFLK 10 Unmodified _KLKKIVKFLK_ 0 0 0 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7666625976562 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 83.155 1 83.155 82.655 83.655 0 0 0 0 0.22588 1 16212 16212 0.40072 0 1 23582 26211 15523 15528 23396 23396 0.2622173246077182 KLKKIVKFLK 10 Unmodified _KLKKIVKFLK_ 0 0 0 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.752197265625 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 110.08 1 110.08 109.58 110.58 0 0 0 0 0.22588 1 21648 21648 0 0 1 23583 26211 15523 15528 23397 23397 0.2622173246077182 KLKKIVKFLK 10 Unmodified _KLKKIVKFLK_ 0 0 0 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7694091796875 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 93.182 1 89.192 88.692 89.692 -3.9907 0 0 0 2.8426 1 18253 18253 0.0013812 0 1 23584 26211 15523 15528 23398 23398 0.2622173246077182 KLKKIVKFLK 10 Unmodified _KLKKIVKFLK_ 0 0 0 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.758056640625 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 18.956 1 17.631 17.131 18.131 -1.3251 0 0 0 2.8426 1 2867 2867 0 0 1 23585 26211 15523 15528 23399 23399 0.2622173246077182 KLKKIVKFLK 10 Unmodified _KLKKIVKFLK_ 0 0 0 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.758056640625 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 18.969 1 17.644 17.144 18.144 -1.3251 0 0 0 0.22588 1 2869 2869 0 0 1 23586 26211 15523 15528 23400 23400 0.2622173246077182 KLKKIVKFLK 10 Unmodified _KLKKIVKFLK_ 0 0 0 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7678833007812 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 19.008 1 17.683 17.183 18.183 -1.3251 0 0 0 2.8426 1 2877 2877 0 0 1 23587 26211 15523 15528 23401 23401 0.2622173246077182 KLKKIVKFLK 10 Unmodified _KLKKIVKFLK_ 0 0 0 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7595825195312 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 39.627 1 37.186 36.686 37.686 -2.4419 0 0 0 0.22588 1 7081 7081 0 0 1 23588 26211 15523 15528 23402 23402 0.2622173246077182 KLKKIVKFLK 10 Unmodified _KLKKIVKFLK_ 0 0 0 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7692260742188 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 39.682 1 37.142 36.642 37.642 -2.5398 0 0 0 2.8426 1 7092 7092 0 0 1 23589 26211 15523 15528 23403 23403 0.2622173246077182 KLKKIVKFLK 10 Unmodified _KLKKIVKFLK_ 0 0 0 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7808227539062 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 90.069 1 86.025 85.525 86.525 -4.0443 0 0 0 0.22588 1 17157 17157 0.35063 0 1 23590 26211 15523 15528 23404 23404 0.2622173246077182 KLKKIVKFLK 10 Unmodified _KLKKIVKFLK_ 0 0 0 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7807006835938 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 95.51 1 91.319 90.819 91.819 -4.1911 0 0 0 0.22588 1 18228 18228 0 0 1 23591 26211 15523 15528 23405 23405 0.2622173246077182 KLKKIVKFLK 10 Unmodified _KLKKIVKFLK_ 0 0 0 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7595825195312 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 91.789 1 87.98 87.48 88.48 -3.8083 0 0 0 2.8426 1 17577 17577 0 0 1 23592 26211 15523 15528 23406 23406 0.2622173246077182 KLKKIVKFLK 10 Unmodified _KLKKIVKFLK_ 0 0 0 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7595825195312 2 622.944476 1243.8744 NaN NaN NaN NaN NaN NaN NaN 91.807 1 87.999 87.499 88.499 -3.8083 0 0 0 0.22588 1 17580 17580 1.6526 0 1 23593 26211 15523 15528 23407 23407 0.2622173246077182 KLKKKKKKSKM 11 Unmodified _KLKKKKKKSKM_ 0 0 0 nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX nc|ENSG00000114439|Q8WY36-2|BBX nc|ENSG00000114439|Q8WY36-2|BBX MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 687.9779052734375 2 687.970699 1373.92685 NaN NaN NaN NaN NaN NaN NaN 171.91 1 167.04 166.54 167.54 -4.873 0 0 0 0.23698 1 34085 34085 1.0715 0.72083 1 23594 2790 15524 15529 23408 23408 0.254839475320523 KLKKKTAFM 9 Unmodified _KLKKKTAFM_ 0 0 0 REV__tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1 REV__tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.8429565429688 2 547.841362 1093.66817 NaN NaN NaN NaN NaN NaN NaN 11.056 1 9.9892 9.4892 10.489 -1.0664 0 0 0 0.19624 1 1229 1229 0.073264 0 1 + 23595 25375 15525 15530 23409 23409 0.1250841628998387 KLKKLKLHKL 10 Unmodified _KLKKLKLHKL_ 0 0 0 REV__nc|ENSG00000187742|Q96T21-2|SECISBP2 REV__nc|ENSG00000187742|Q96T21-2|SECISBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 624.946044921875 2 624.94755 1247.88055 NaN NaN NaN NaN NaN NaN NaN 11.514 1 10.448 9.9476 10.948 -1.0664 0 0 0 0.22588 1 1311 1311 0 0 1 + 23596 19109 15526 15531 23410 23410 0.2665225069229109 KLKKRKEKLPL 11 Unmodified _KLKKRKEKLPL_ 0 0 0 REV__ENST00000421655.1_1_9:108522415-108523033:+|nuORF REV__ENST00000421655.1_1_9:108522415-108523033:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 690.9005126953125 2 690.974296 1379.93404 NaN NaN NaN NaN NaN NaN NaN 172.2 1 167.31 166.81 167.81 -4.881 0 0 0 0.22632 1 34164 34164 0.094841 0 1 + 23597 13998 15527 15532 23411 23411 0.25927003404171955 KLKKRKKKRKK 11 Unmodified _KLKKRKKKRKK_ 0 0 0 REV__ENST00000216190.12_1_22:36906978-36907630:-|nuORF REV__ENST00000216190.12_1_22:36906978-36907630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2654113769531 3 490.359461 1468.05655 NaN NaN NaN NaN NaN NaN NaN 58.239 1 54.987 54.487 55.487 -3.2517 0 0 0 0.22632 1 10819 10819 0.00056442 0 1 + 23598 20011 15528 15533 23412 23412 0.3412488492620014 KLKKRKKKRKK 11 Unmodified _KLKKRKKKRKK_ 0 0 0 REV__ENST00000216190.12_1_22:36906978-36907630:-|nuORF REV__ENST00000216190.12_1_22:36906978-36907630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2654113769531 3 490.359461 1468.05655 NaN NaN NaN NaN NaN NaN NaN 58.26 1 55.008 54.508 55.508 -3.2517 0 0 0 0.23698 1 10823 10823 0 0 1 + 23599 20011 15528 15533 23413 23413 0.3412488492620014 KLKLKGTKY 9 Unmodified _KLKLKGTKY_ 0 0 0 REV__nc|ENSG00000168781|Q6PFW1-7|PPIP5K1 REV__nc|ENSG00000168781|Q6PFW1-7|PPIP5K1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2292175292969 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 75.476 1 72.061 71.561 72.561 -3.4151 0 0 0 0.23508 1 14722 14722 0.26902 0 1 + 23600 18055 15529 15534 23414 23414 0.15527758679127146 KLKLLVLVLL 10 Unmodified _KLKLLVLVLL_ 0 0 0 ENST00000231572.7_1_5:167920941-167921575:+|nuORF ENST00000231572.7_1_5:167920941-167921575:+|nuORF ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3285522460938 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 159.9 1 159.9 159.4 160.4 0 0 0 0 0.22588 1 32104 32104 0.40072 0 1 23601 8159 15530 15535 23415 23415 0.2723152533792472 KLKLLVLVLL 10 Unmodified _KLKLLVLVLL_ 0 0 0 ENST00000231572.7_1_5:167920941-167921575:+|nuORF ENST00000231572.7_1_5:167920941-167921575:+|nuORF ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3174438476562 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 161.87 1 156.73 156.23 157.23 -5.1438 0 0 0 0.22588 1 31437 31437 0.40072 0 1 23602 8159 15530 15535 23416 23416 0.2723152533792472 KLKLLVLVLL 10 Unmodified _KLKLLVLVLL_ 0 0 0 ENST00000231572.7_1_5:167920941-167921575:+|nuORF ENST00000231572.7_1_5:167920941-167921575:+|nuORF ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3363647460938 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 67.572 1 64.245 63.745 64.745 -3.3268 0 0 0 0.22588 1 12742 12742 0.40072 0 1 23603 8159 15530 15535 23417 23417 0.2723152533792472 KLKLRPRIRPR 11 Unmodified _KLKLRPRIRPR_ 0 0 0 ENSG00000270765|ENST00000604641|GAS2L2 ENSG00000270765|ENST00000604641|GAS2L2 ENSG00000270765|ENST00000604641|GAS2L2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.739501953125 3 478.328161 1431.96265 NaN NaN NaN NaN NaN NaN NaN 53.701 1 50.606 50.106 51.106 -3.0954 0 0 0 0.22632 1 9927 9927 0 0 1 23604 8000 15531 15536 23418 23418 0.2639516582394208 KLKNTAEQF 9 Unmodified _KLKNTAEQF_ 0 0 0 nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1 nc|ENSG00000101868|P09884|POLA1 nc|ENSG00000101868|P09884|POLA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012939453125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 92.97 1 88.826 88.326 89.326 -4.1435 0 0 0 0.23508 1 17716 17716 2.2828 0 1 23605 2091 15532 15537 23419 23419 0.046171279889904326 KLKRRYRKRPQ 11 Unmodified _KLKRRYRKRPQ_ 0 0 0 REV__ENSG00000162817|ENST00000294889|C1orf115 REV__ENSG00000162817|ENST00000294889|C1orf115 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 764.9829711914062 2 764.986592 1527.95863 NaN NaN NaN NaN NaN NaN NaN 174 1 174 173.5 174.5 0 0 0 0 0.23698 1 36005 36005 1.0715 0.76443 1 + 23606 17530 15533 15538 23420 23420 0.21577076330231648 KLKTAKKKEE 10 Unmodified _KLKTAKKKEE_ 0 0 0 RTF1|p.K236Efs*37|1|0.13|ENSG00000137815|chr15:41464812-41464813|AA/-|frameshift_variant RTF1|p.K236Efs*37|1|0.13|ENSG00000137815|chr15:41464812-41464813|AA/-|frameshift_variant RTF1|p.K236Efs*37|1|0.13|ENSG00000137815|chr15:41464812-41464813|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2871704101562 2 601.876988 1201.73942 NaN NaN NaN NaN NaN NaN NaN 168.52 1 168.52 168.02 169.02 0 0 0 0 0.22588 1 34519 34519 3.2813 0 1 23607 25628 15534 15539 23421 23421 0.1466220752836307 KLKTKALEPPA 11 Unmodified _KLKTKALEPPA_ 0 0 0 USP40|p.F846Lfs*16|1|0.24|ENSG00000085982|chr2:233510121-233510121|A/-|frameshift_variant;ENST00000484528.1_1_2:234465455-234475343:-|nuORF;ENST00000427947.7_1_2:234462980-234475343:-|nuORF;USP40|p.N976Hfs*17|1|0.07|ENSG00000085982|chr2:233491251-233491252|-/TGATATGG|frameshift_variant;nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40 USP40|p.F846Lfs*16|1|0.24|ENSG00000085982|chr2:233510121-233510121|A/-|frameshift_variant;nc|ENSG00000085982|Q9NVE5|USP40 USP40|p.F846Lfs*16|1|0.24|ENSG00000085982|chr2:233510121-233510121|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 398.8615417480469 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 10.986 1 9.8926 9.3926 10.393 -1.0936 0 0 0 0.23698 1 1280 1280 0.094841 0 1 23608 26561;1686 15535 15540 23422 23422 0.14403109016689086 KLKTRKRRKL 10 Unmodified _KLKTRKRRKL_ 0 0 0 ENST00000301624.8_1_17:76104411-76104549:+|nuORF ENST00000301624.8_1_17:76104411-76104549:+|nuORF ENST00000301624.8_1_17:76104411-76104549:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 663.4766845703125 2 663.962055 1325.90956 NaN NaN NaN NaN NaN NaN NaN 168.28 1 168.28 167.78 168.78 0 0 0 0 0.22588 1 34450 34450 0.40072 0.050084 1 23609 8562 15536 15541 23423 23423 0.25963788041303815 KLKYETTIR 9 Unmodified _KLKYETTIR_ 0 0 0 CON__Q3KUS7 CON__Q3KUS7 CON__Q3KUS7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3262329101562 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 142.51 1 137.61 137.11 138.11 -4.8982 0 0 0 0.19646 1 27497 27497 0.12781 0 1 + 23610 691 15537 15542 23424 23424 0.10169962948498323 KLLAKCRYT 9 Unmodified _KLLAKCRYT_ 0 0 0 ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2 ENST00000452385.5_1_3:48982572-49020700:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 366.54779052734375 3 365.882955 1094.62703 -0.15498 -5.6705E-05 0.1432 5.2394E-05 -0.011781 -4.3106E-06 365.8830604514648 25.436 0.65978 25.436 25.29 25.95 0 42 18 3 0 0 0 0.50979 1 4444 4444 1.2148 0.96335 1 7924500 23611 6515 15538 15543 23425 23425 0.08350655250524142 KLLAKCRYT 9 Unmodified _KLLAKCRYT_ 0 0 0 ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2 ENST00000452385.5_1_3:48982572-49020700:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 365.882955 1094.62703 0.71424 0.00026133 -0.42549 -0.00015568 0.28875 0.00010565 365.88280630710324 27.174 0.7443 25.392 25.165 25.909 -1.7821 -0.012697 -0.00049931 NaN 1.2148 26 20 2 NaN NaN NaN NaN 0 NaN NaN 0 6233000 23612 6515 15538 15543 0.08350655250524142 KLLAKCRYT 9 Unmodified _KLLAKCRYT_ 0 0 0 ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2 ENST00000452385.5_1_3:48982572-49020700:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 365.882955 1094.62703 0.19198 7.0241E-05 -0.0031046 -1.1359E-06 0.18887 6.9105E-05 365.88280236852876 27.019 0.77224 25.384 25.178 25.95 -1.6347 -0.020292 -3.568E-05 NaN 1.2148 46 21 3 NaN NaN NaN NaN 0 NaN NaN 0 7773800 23613 6515 15538 15543 0.08350655250524142 KLLAKCRYT 9 Unmodified _KLLAKCRYT_ 0 0 0 ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2 ENST00000452385.5_1_3:48982572-49020700:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 365.882955 1094.62703 -0.52709 -0.00019285 0.64967 0.0002377 0.12258 4.485E-05 365.8831918524343 27.327 0.77416 25.405 25.122 25.896 -1.9222 0.00095542 0.00068084 NaN 1.2148 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 4140000 23614 6515 15538 15543 0.08350655250524142 KLLDERLVT 9 Unmodified _KLLDERLVT_ 0 0 0 nc|ENSG00000176390|Q8IUI8-2|CRLF3;ENSG00000176390|ENST00000324238|CRLF3 nc|ENSG00000176390|Q8IUI8-2|CRLF3 nc|ENSG00000176390|Q8IUI8-2|CRLF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7938232421875 2 543.829506 1085.64446 0.029202 1.5881E-05 0.077924 4.2377E-05 0.10713 5.8258E-05 543.8294565962743 104.41 0.65157 100.19 99.857 100.51 -4.2183 47 18 4 0 0 0 0.031786 1 20540 20540 79.596 9.2643 1 6887800 23615 6462 15539 15544 23426 23426 0.10506274057183873 KLLDERLVT 9 Unmodified _KLLDERLVT_ 0 0 0 nc|ENSG00000176390|Q8IUI8-2|CRLF3;ENSG00000176390|ENST00000324238|CRLF3 nc|ENSG00000176390|Q8IUI8-2|CRLF3 nc|ENSG00000176390|Q8IUI8-2|CRLF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.793701171875 2 543.829506 1085.64446 0.17282 9.3984E-05 -0.091953 -5.0007E-05 0.080866 4.3977E-05 543.8293972687368 104.6 0.68736 100.25 99.869 100.56 -4.346 46 19 3 0 0 0 0.02787 1 20044 20044 74.2 16.478 1 6717000 23616 6462 15539 15544 23427 23427 0.10506274057183873 KLLDERLVT 9 Unmodified _KLLDERLVT_ 0 0 0 nc|ENSG00000176390|Q8IUI8-2|CRLF3;ENSG00000176390|ENST00000324238|CRLF3 nc|ENSG00000176390|Q8IUI8-2|CRLF3 nc|ENSG00000176390|Q8IUI8-2|CRLF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7865600585938 2 543.829506 1085.64446 0.80134 0.00043579 -0.84286 -0.00045837 -0.041516 -2.2578E-05 543.8289810400602 104.35 0.77991 100.29 99.877 100.66 -4.0543 50 21 3 0 0 0 0.10699 1 20050 20050 53.404 0 1 6225900 23617 6462 15539 15544 23428 23428 0.10506274057183873 KLLEPVLLL 9 Unmodified _KLLEPVLLL_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 518.8101806640625 2 519.352086 1036.68962 0.21898 0.00011373 -0.026061 -1.3535E-05 0.19292 0.00010019 519.3520325795547 170.95 0.30772 170.95 170.76 171.06 0 21 8 4 0 0 0 8.5329E-10 1 35171 35171 74.216 42.487 1 101760000 23618 2284 15540 15545 23429 23429 0.1727412459038078 KLLEPVPVSV 10 Unmodified _KLLEPVPVSV_ 0 0 0 ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF;ENSG00000196704|ENST00000359904|AMZ2 ENST00000578175.5_1_17:66246915-66252971:+|nuORF ENST00000578175.5_1_17:66246915-66252971:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2735595703125 2 540.8368 1079.65905 0.29518 0.00015964 0.51806 0.00028019 0.81324 0.00043983 540.8368295440772 129.89 0.76627 129.89 129.53 130.3 0 46 21 3 0 0 0 0.23733 1 25688 25688 61.09 15.39 1 7599900 23619 7303 15541 15546 23430 23430 0.1224034620531711 KLLEPVPVSV 10 Unmodified _KLLEPVPVSV_ 0 0 0 ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF;ENSG00000196704|ENST00000359904|AMZ2 ENST00000578175.5_1_17:66246915-66252971:+|nuORF ENST00000578175.5_1_17:66246915-66252971:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.281494140625 2 540.8368 1079.65905 0.20103 0.00010873 0.29617 0.00016018 0.4972 0.0002689 540.8368502430512 134.07 0.814 129.43 128.99 129.81 -4.6399 64 22 4 0 0 0 0.23733 1 26398 26398 61.09 22.914 1 9816200 23620 7303 15541 15546 23431 23431 0.1224034620531711 KLLEPVPVSV 10 Unmodified _KLLEPVPVSV_ 0 0 0 ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF;ENSG00000196704|ENST00000359904|AMZ2 ENST00000578175.5_1_17:66246915-66252971:+|nuORF ENST00000578175.5_1_17:66246915-66252971:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2676391601562 2 540.8368 1079.65905 0.12855 6.9522E-05 0.18456 9.9814E-05 0.3131 0.00016934 540.8368331508652 134.39 0.79318 129.52 128.99 129.79 -4.8726 54 22 3 0 0 0 0.071455 1 25801 25801 75.571 23.941 1 9734500 23621 7303 15541 15546 23432 23432 0.1224034620531711 KLLEPVPVSV 10 Unmodified _KLLEPVPVSV_ 0 0 0 ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF;ENSG00000196704|ENST00000359904|AMZ2 ENST00000578175.5_1_17:66246915-66252971:+|nuORF ENST00000578175.5_1_17:66246915-66252971:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2723388671875 2 540.8368 1079.65905 0.29204 0.00015795 -0.030015 -1.6233E-05 0.26203 0.00014171 540.8366804709825 134.33 0.83939 129.52 129.06 129.9 -4.8175 55 23 3 0 0 0 0.97743 1 25864 25864 51 46.169 1 9080700 23622 7303 15541 15546 23433 23433 0.1224034620531711 KLLEYIEEI 9 Unmodified _KLLEYIEEI_ 0 0 0 HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant;HMMR|p.K666Nfs*11|1|0.36|ENSG00000072571|chr5:163490420-163490420|A/-|frameshift_variant;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR;nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330-2|HMMR HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3262939453125 2 575.323722 1148.63289 0.29925 0.00017217 0.30598 0.00017604 0.60523 0.0003482 575.3237343967351 158.86 0.80276 158.86 158.5 159.3 0 52 22 3 0 0 0 0.11219 1 31911 31911 51.63 5.9302 1 10402000 23623 1469 15542 15547 23434 23434 0.06452032243191752 KLLEYIEEI 9 Unmodified _KLLEYIEEI_ 0 0 0 HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant;HMMR|p.K666Nfs*11|1|0.36|ENSG00000072571|chr5:163490420-163490420|A/-|frameshift_variant;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR;nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330-2|HMMR HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.328369140625 2 575.323722 1148.63289 0.28027 0.00016124 1.1604 0.00066763 1.4407 0.00082887 575.3247090743844 163.79 0.4231 158.75 158.51 158.94 -5.0446 21 11 3 0 0 0 0.39189 1 31909 31909 26.268 4.7312 1 8286900 23624 1469 15542 15547 23435 23435 0.06452032243191752 KLLEYIEEI 9 Unmodified _KLLEYIEEI_ 0 0 0 HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant;HMMR|p.K666Nfs*11|1|0.36|ENSG00000072571|chr5:163490420-163490420|A/-|frameshift_variant;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR;nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330-2|HMMR HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3268432617188 2 575.323722 1148.63289 0.48417 0.00027856 0.22122 0.00012728 0.7054 0.00040583 575.3234562959161 163.76 0.4738 158.69 158.46 158.93 -5.0648 20 13 3 0 0 0 0.11219 1 31887 31887 51.63 5.9302 1 14574000 23625 1469 15542 15547 23436 23436 0.06452032243191752 KLLGELHTL 9 Unmodified _KLLGELHTL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 512.7550659179688 2 512.313492 1022.61243 -0.24477 -0.0001254 0.20403 0.00010453 -0.040745 -2.0874E-05 512.3135465511168 103.46 0.60877 99.243 98.978 99.587 -4.2183 30 17 2 0 0 0 0.38759 1 20366 20366 30.703 13.132 1 2445600 23626 1583 15543 15548 23437 23437 0.10202906374036047 KLLGELHTL 9 Unmodified _KLLGELHTL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 512.313492 1022.61243 -0.26348 -0.00013498 0.28944 0.00014828 0.025965 1.3302E-05 512.3135809235931 103.61 0.69447 99.265 98.89 99.585 -4.346 -0.012844 0.00024882 NaN 30.703 40 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2291900 23627 1583 15543 15548 0.10202906374036047 KLLGELHTL 9 Unmodified _KLLGELHTL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 512.313492 1022.61243 0.5853 0.00029986 -0.5196 -0.0002662 0.065701 3.3659E-05 512.3131829335883 103.38 0.77408 99.325 98.924 99.698 -4.0543 0.047467 -0.00058015 NaN 30.703 43 21 3 NaN NaN NaN NaN 0 NaN NaN 0 2555800 23628 1583 15543 15548 0.10202906374036047 KLLGMHVL 8 Unmodified _KLLGMHVL_ 0 0 0 REV__ENSG00000100401|ENST00000356244|RANGAP1 REV__ENSG00000100401|ENST00000356244|RANGAP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.1986083984375 3 304.189608 909.546994 NaN NaN NaN NaN NaN NaN NaN 176.73 1 171.83 171.33 172.33 -4.9008 0 0 0 0.21486 1 35239 35239 1.6526 1.1943 1 + 23629 14708 15544 15549 23438 23438 0.08860213647335513 KLLGSTKRL 9 Unmodified _KLLGSTKRL_ 0 0 0 ENSG00000177303|ENST00000321617|CASKIN2;CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant ENSG00000177303|ENST00000321617|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.2142639160156 3 339.225598 1014.65496 NaN NaN NaN NaN NaN NaN NaN 27.43 1 27.43 26.93 27.93 0 0 0 0 0.18489 1 4839 4839 17.113 8.9574 1 23630 6506 15545 15550 23439 23439 0.14822301502283608 KLLGTIYTA 9 Unmodified _KLLGTIYTA_ 0 0 0 nc|ENSG00000119471|Q6YN16-2|HSDL2;ENSG00000119471|ENST00000398805|HSDL2 nc|ENSG00000119471|Q6YN16-2|HSDL2 nc|ENSG00000119471|Q6YN16-2|HSDL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2687683105469 2 490.294768 978.574983 0.30173 0.00014793 -0.47179 -0.00023132 -0.17007 -8.3382E-05 490.29422292669466 102.61 0.27905 98.587 98.454 98.733 -4.0212 11 7 2 0 0 0 0.80264 1 19737 19737 17.113 2.2746 1 362690 23631 3079 15546 15551 23440 23440 0.08483815108422732 KLLGYDVHV 9 Unmodified _KLLGYDVHV_ 0 0 0 nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000472067.1_1_7:142991698-142998016:+|nuORF;ENSG00000106144|ENST00000310447|CASP2 nc|ENSG00000106144|P42575-2|CASP2 nc|ENSG00000106144|P42575-2|CASP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.28125 2 522.297842 1042.58113 NaN NaN NaN NaN NaN NaN NaN 101.83 1 101.83 101.33 102.33 0 0 0 0 0.23508 1 19994 19994 9.3831 0.78985 1 23632 2365 15547 15552 23441 23441 0.061543333399413314 KLLGYDVHV 9 Unmodified _KLLGYDVHV_ 0 0 0 nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000472067.1_1_7:142991698-142998016:+|nuORF;ENSG00000106144|ENST00000310447|CASP2 nc|ENSG00000106144|P42575-2|CASP2 nc|ENSG00000106144|P42575-2|CASP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27197265625 2 522.297842 1042.58113 0.79507 0.00041526 -3.079 -0.0016081 -2.2839 -0.0011929 522.7970372696601 105.56 0.13564 101.47 101.36 101.5 -4.0913 5 3 2 0 0 0 0.58804 1 20308 20308 13.906 3.7227 1 587220 23633 2365 15547 15552 23442 23442 0.061543333399413314 KLLIPRKRR 9 Unmodified _KLLIPRKRR_ 0 0 0 ENST00000422953.1_1_9:5085001-5085526:-|nuORF ENST00000422953.1_1_9:5085001-5085526:-|nuORF ENST00000422953.1_1_9:5085001-5085526:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2557983398438 2 590.411666 1178.80878 0.35973 0.00021239 -2.2529 -0.0013302 -1.8932 -0.0011178 590.4107169515698 171.45 0.10425 171.45 171.4 171.5 0 4 2 2 0 0 0 0.64764 1 35321 35321 0.96228 0.55401 1 4236000 23634 9684 15548 15553 23443 23443 0.22652756058437262 KLLKGVHHY 9 Unmodified _KLLKGVHHY_ 0 0 0 REV__nc|ENSG00000101856|O00264-2|PGRMC1 REV__nc|ENSG00000101856|O00264-2|PGRMC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7769775390625 2 547.827101 1093.63965 NaN NaN NaN NaN NaN NaN NaN 20.336 1 18.952 18.452 19.452 -1.3847 0 0 0 0.23508 1 3151 3151 7.2892 0.56607 1 + 23635 14802 15549 15554 23444 23444 0.09657434705104606 KLLKIKKIITI 11 Unmodified _KLLKIKKIITI_ 0 0 0 REV__tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1 REV__tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 655.979248046875 2 655.978516 1309.94248 NaN NaN NaN NaN NaN NaN NaN 33.677 1 31.462 30.962 31.962 -2.2158 0 0 0 0.23698 1 5877 5877 0 0 1 + 23636 25091 15550 15555 23445 23445 0.2999055732079796 KLLKKEIAL 9 Unmodified _KLLKKEIAL_ 0 0 0 ENSG00000100425|ENST00000404760|BRD1;nc|ENSG00000100425|O95696|BRD1 ENSG00000100425|ENST00000404760|BRD1 ENSG00000100425|ENST00000404760|BRD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 352.1766357421875 3 352.577749 1054.71142 -0.33836 -0.0001193 0.73101 0.00025774 0.39265 0.00013844 352.5779933325218 58.867 0.39389 55.956 55.751 56.144 -2.9105 14 10 2 0 0 0 0.38759 1 11290 11290 22.736 10.496 1 625140 23637 1977 15551 15556 23446 23446 0.1862492933894373 KLLKKEIAL 9 Unmodified _KLLKKEIAL_ 0 0 0 ENSG00000100425|ENST00000404760|BRD1;nc|ENSG00000100425|O95696|BRD1 ENSG00000100425|ENST00000404760|BRD1 ENSG00000100425|ENST00000404760|BRD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 352.577749 1054.71142 0.0859 3.0286E-05 0.33894 0.0001195 0.42484 0.00014979 352.57784249591117 59.186 0.42907 55.873 55.707 56.136 -3.3139 -0.078765 -0.00012424 NaN 22.736 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 574930 23638 1977 15551 15556 0.1862492933894373 KLLKKEIAL 9 Unmodified _KLLKKEIAL_ 0 0 0 ENSG00000100425|ENST00000404760|BRD1;nc|ENSG00000100425|O95696|BRD1 ENSG00000100425|ENST00000404760|BRD1 ENSG00000100425|ENST00000404760|BRD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 352.577749 1054.71142 -0.57255 -0.00020187 0.52751 0.00018599 -0.045039 -1.588E-05 352.57789326938 59.231 0.48445 56.025 55.787 56.272 -3.2052 0.074078 7.5221E-05 NaN 22.736 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 615780 23639 1977 15551 15556 0.1862492933894373 KLLKKKQKK 9 Unmodified _KLLKKKQKK_ 0 0 0 ENST00000565598.2_1_16:53403530-53404575:-|nuORF;ENST00000565421.1_1_16:53404024-53404910:-|nuORF ENST00000565598.2_1_16:53403530-53404575:-|nuORF ENST00000565598.2_1_16:53403530-53404575:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 571.6064453125 2 571.410801 1140.80705 NaN NaN NaN NaN NaN NaN NaN 169.47 1 164.59 164.09 165.09 -4.873 0 0 0 0.19631 1 33471 33471 0.20686 0 1 23640 11357 15552 15557 23447 23447 0.24227702249845606 KLLKKLKLLF 10 Unmodified _KLLKKLKLLF_ 0 0 0 tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1 tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1 tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.757080078125 2 622.446852 1242.87915 NaN NaN NaN NaN NaN NaN NaN 163.45 1 158.66 158.16 159.16 -4.7898 0 0 0 0.22588 1 32581 32581 0.40072 0 1 23641 26069 15553 15558 23448 23448 0.26742616603542047 KLLKLFQGV 9 Unmodified _KLLKLFQGV_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;GIGYF2|p.E1119K|1|0.19|ENSG00000204120|chr2:232845781-232845781|G/A|missense_variant nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6920166015625 2 523.342052 1044.66955 -0.55185 -0.00028881 1.0236 0.00053568 0.47173 0.00024688 523.34257270678 132.09 0.44907 127.24 126.94 127.39 -4.8527 13 12 2 0 0 0 0.82765 1 25355 25355 9.3831 0 1 1040500 23642 7561 15554 15559 23449 23449 0.14900373650425536 KLLKLLKYLL 10 Unmodified _KLLKLLKYLL_ 0 0 0 ENST00000545279.5_1_5:135468581-135489282:+|nuORF;ENST00000509297.5_1_5:135469533-135483594:+|nuORF ENST00000545279.5_1_5:135468581-135489282:+|nuORF ENST00000545279.5_1_5:135468581-135489282:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7600708007812 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 173.22 1 168.43 167.93 168.93 -4.7898 0 0 0 2.8426 1 35323 35323 0.13989 0.04505 1 23643 10729 15555 15560 23450 23450 0.25098910366659766 KLLKLLKYLL 10 Unmodified _KLLKLLKYLL_ 0 0 0 ENST00000545279.5_1_5:135468581-135489282:+|nuORF;ENST00000509297.5_1_5:135469533-135483594:+|nuORF ENST00000545279.5_1_5:135468581-135489282:+|nuORF ENST00000545279.5_1_5:135468581-135489282:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7744750976562 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 166.13 1 161.15 160.65 161.65 -4.9811 0 0 0 2.8426 1 32532 32532 0.69767 0.55777 1 23644 10729 15555 15560 23451 23451 0.25098910366659766 KLLLHKIKL 9 Unmodified _KLLLHKIKL_ 0 0 0 REV__APC|p.K1454Lfs*20|1|0.81|ENSG00000134982|chr5:112839952-112839953|-/TT|frameshift_variant REV__APC|p.K1454Lfs*20|1|0.81|ENSG00000134982|chr5:112839952-112839953|-/TT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 553.3966674804688 2 553.394619 1104.77469 NaN NaN NaN NaN NaN NaN NaN 168.3 1 168.3 167.8 168.8 0 0 0 0 0.19624 1 34458 34458 0.073264 0.069883 1 + 23645 13082 15556 15561 23452 23452 0.2264891484680902 KLLLIKPNKI 10 Unmodified _KLLLIKPNKI_ 0 0 0 REV__ENSG00000115020|ENST00000264380|PIKFYVE REV__ENSG00000115020|ENST00000264380|PIKFYVE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2496337890625 2 590.413009 1178.81146 NaN NaN NaN NaN NaN NaN NaN 164.61 1 159.57 159.07 160.07 -5.0446 0 0 0 0.22588 1 32117 32117 3.2813 1.2216 1 + 23646 15396 15557 15562 23453 23453 0.22921166672722393 KLLLIKRLLL 10 Unmodified _KLLLIKRLLL_ 0 0 0 REV__PTGER3|p.R355L|1|0.13|ENSG00000050628|chr1:71012318-71012318|C/A|missense_variant REV__PTGER3|p.R355L|1|0.13|ENSG00000050628|chr1:71012318-71012318|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 611.953125 2 611.952301 1221.89005 NaN NaN NaN NaN NaN NaN NaN 164.25 1 164.25 163.75 164.75 0 0 0 0 0.22588 1 33194 33194 0.40072 0 1 + 23647 24526 15558 15563 23454 23454 0.2879801897784091 KLLLKSFRIR 10 Unmodified _KLLLKSFRIR_ 0 0 0 REV__nc|ENSG00000257127|Q5K131|CLLU1 REV__nc|ENSG00000257127|Q5K131|CLLU1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2409973144531 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 28.618 1 28.618 28.118 29.118 0 0 0 0 2.8426 1 5089 5089 0.13989 0 1 + 23648 24297 15559 15564 23455 23455 0.21390489652821998 KLLLLLKRR 9 Unmodified _KLLLLLKRR_ 0 0 0 REV__ENST00000416673.6_1_2:114369763-114384446:-|nuORF REV__ENST00000416673.6_1_2:114369763-114384446:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3272705078125 2 576.918793 1151.82303 0.29637 0.00017098 -2.1216 -0.001224 -1.8252 -0.001053 576.919854415425 132.08 0.099655 132.08 132.03 132.13 0 4 2 2 0 0 0 0.88442 1 26113 26113 0 0 1 1763400 + 23649 21471 15560 15565 23456 23456 0.25319408486734574 KLLLLLKRRKR 11 Unmodified _KLLLLLKRRKR_ 0 0 0 REV__ENST00000416673.6_1_2:114369763-114384446:-|nuORF REV__ENST00000416673.6_1_2:114369763-114384446:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 479.29364013671875 3 479.680312 1436.01911 NaN NaN NaN NaN NaN NaN NaN 124.26 1 119.53 119.03 120.03 -4.731 0 0 0 0.22632 1 23865 23865 0.00056442 0 1 + 23650 21471 15561 15566 23457 23457 0.3185379366061625 KLLPAGHSV 9 Unmodified _KLLPAGHSV_ 0 0 0 ENST00000561573.1_1_15:90806992-90815017:+|nuORF;ENSG00000182768|ENST00000379095|NGRN ENST00000561573.1_1_15:90806992-90815017:+|nuORF ENST00000561573.1_1_15:90806992-90815017:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5337829589844 2 461.279452 920.544351 -0.24655 -0.00011373 0.48845 0.00022531 0.2419 0.00011158 461.2796505677109 41.867 0.44892 39.232 38.982 39.431 -2.6348 23 12 2 0 0 0 0.027495 1 7836 7836 85.642 29.464 1 2264600 23651 11304 15562 15567 23458 23458 0.08090081514046688 KLLPAGHSV 9 Unmodified _KLLPAGHSV_ 0 0 0 ENST00000561573.1_1_15:90806992-90815017:+|nuORF;ENSG00000182768|ENST00000379095|NGRN ENST00000561573.1_1_15:90806992-90815017:+|nuORF ENST00000561573.1_1_15:90806992-90815017:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5321350097656 2 461.279452 920.544351 -0.10504 -4.8455E-05 0.37126 0.00017125 0.26621 0.0001228 461.27953276183246 41.798 0.52506 39.147 38.865 39.39 -2.651 29 14 3 0 0 0 0.58921 1 7522 7522 11.749 5.5435 1 1894700 23652 11304 15562 15567 23459 23459 0.08090081514046688 KLLPAGHSV 9 Unmodified _KLLPAGHSV_ 0 0 0 ENST00000561573.1_1_15:90806992-90815017:+|nuORF;ENSG00000182768|ENST00000379095|NGRN ENST00000561573.1_1_15:90806992-90815017:+|nuORF ENST00000561573.1_1_15:90806992-90815017:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.279452 920.544351 0.33153 0.00015293 0.0069323 3.1977E-06 0.33846 0.00015613 461.27936100670917 39.341 0.44479 39.341 39.13 39.575 0 0.12282 -0.00028614 NaN 85.642 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2336700 23653 11304 15562 15567 0.08090081514046688 KLLPQLTYL 9 Unmodified _KLLPQLTYL_ 0 0 0 ENSG00000140350|ENST00000465139|ANP32A;ENST00000486769.1_1_9:100760930-100767440:+|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000136938|ENST00000339399|ANP32B ENSG00000140350|ENST00000465139|ANP32A ENSG00000140350|ENST00000465139|ANP32A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 544.9498291015625 2 544.839342 1087.66413 NaN NaN NaN NaN NaN NaN NaN 166.03 1 161.04 160.54 161.54 -4.9811 0 0 0 0.012999 1 32503 32503 54.068 35.454 1 23654 4292 15563 15568 23460 23460 0.12380650067916577 KLLPSVTEL 9 Unmodified _KLLPSVTEL_ 0 0 0 nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-13|TAF1;ENSG00000122728|ENST00000242310|TAF1L;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1;TAF1|p.L1451Cfs*4|1|0.04|ENSG00000147133|chrX:71408121-71408125|CTAAT/-|frameshift_variant;TAF1L|p.K665Rfs*4|2|0.06|ENSG00000122728|chr9:32633586-32633586|T/-|frameshift_variant;TAF1L|p.F1231Lfs*20|1|0.42|ENSG00000122728|chr9:32631887-32631887|A/-|frameshift_variant;TAF1L|p.E1124*|1|0.35|ENSG00000122728|chr9:32632210-32632211|-/A|frameshift_variant;TAF1L|p.F928Lfs*13|1|0.25|ENSG00000122728|chr9:32632796-32632796|A/-|frameshift_variant;TAF1L|p.A852Pfs*14|1|0.21|ENSG00000122728|chr9:32633027-32633027|T/-|frameshift_variant;TAF1L|p.F683Lfs*27|1|0.39|ENSG00000122728|chr9:32633531-32633531|A/-|frameshift_variant;ENST00000483365.1_1_X:70596867-70597689:+|nuORF nc|ENSG00000147133|P21675-25|TAF1 nc|ENSG00000147133|P21675-25|TAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 500.8009033203125 2 500.307875 998.601197 0.013603 6.8058E-06 -0.012384 -6.196E-06 0.0012188 6.098E-07 500.3078175636368 136.4 0.84393 131.76 131.29 132.13 -4.6399 49 23 3 0 0 0 0.035084 2 26907 26885;26907 54.068 35.454 1 4704600 23655 3240 15564 15569 23461;23462 23462 0.10184084279887884 KLLPSVTEL 9 Unmodified _KLLPSVTEL_ 0 0 0 nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-13|TAF1;ENSG00000122728|ENST00000242310|TAF1L;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1;TAF1|p.L1451Cfs*4|1|0.04|ENSG00000147133|chrX:71408121-71408125|CTAAT/-|frameshift_variant;TAF1L|p.K665Rfs*4|2|0.06|ENSG00000122728|chr9:32633586-32633586|T/-|frameshift_variant;TAF1L|p.F1231Lfs*20|1|0.42|ENSG00000122728|chr9:32631887-32631887|A/-|frameshift_variant;TAF1L|p.E1124*|1|0.35|ENSG00000122728|chr9:32632210-32632211|-/A|frameshift_variant;TAF1L|p.F928Lfs*13|1|0.25|ENSG00000122728|chr9:32632796-32632796|A/-|frameshift_variant;TAF1L|p.A852Pfs*14|1|0.21|ENSG00000122728|chr9:32633027-32633027|T/-|frameshift_variant;TAF1L|p.F683Lfs*27|1|0.39|ENSG00000122728|chr9:32633531-32633531|A/-|frameshift_variant;ENST00000483365.1_1_X:70596867-70597689:+|nuORF nc|ENSG00000147133|P21675-25|TAF1 nc|ENSG00000147133|P21675-25|TAF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 500.307875 998.601197 -0.10503 -5.2548E-05 0.12909 6.4584E-05 0.024058 1.2037E-05 500.3079362481918 136.68 0.77159 131.78 131.34 132.11 -4.8951 -0.032441 7.9906E-05 NaN 54.068 38 21 2 NaN NaN NaN NaN 0 NaN NaN 0 5045100 23656 3240 15564 15569 0.10184084279887884 KLLPSVTEL 9 Unmodified _KLLPSVTEL_ 0 0 0 nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-13|TAF1;ENSG00000122728|ENST00000242310|TAF1L;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1;TAF1|p.L1451Cfs*4|1|0.04|ENSG00000147133|chrX:71408121-71408125|CTAAT/-|frameshift_variant;TAF1L|p.K665Rfs*4|2|0.06|ENSG00000122728|chr9:32633586-32633586|T/-|frameshift_variant;TAF1L|p.F1231Lfs*20|1|0.42|ENSG00000122728|chr9:32631887-32631887|A/-|frameshift_variant;TAF1L|p.E1124*|1|0.35|ENSG00000122728|chr9:32632210-32632211|-/A|frameshift_variant;TAF1L|p.F928Lfs*13|1|0.25|ENSG00000122728|chr9:32632796-32632796|A/-|frameshift_variant;TAF1L|p.A852Pfs*14|1|0.21|ENSG00000122728|chr9:32633027-32633027|T/-|frameshift_variant;TAF1L|p.F683Lfs*27|1|0.39|ENSG00000122728|chr9:32633531-32633531|A/-|frameshift_variant;ENST00000483365.1_1_X:70596867-70597689:+|nuORF nc|ENSG00000147133|P21675-25|TAF1 nc|ENSG00000147133|P21675-25|TAF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 500.307875 998.601197 0.084269 4.2161E-05 0.0011374 5.6903E-07 0.085407 4.273E-05 500.30782901795243 136.73 0.93738 131.9 131.41 132.35 -4.8307 0.088105 -4.8124E-05 NaN 54.068 48 26 3 NaN NaN NaN NaN 0 NaN NaN 0 4305700 23657 3240 15564 15569 0.10184084279887884 KLLQFLKGV 9 Unmodified _KLLQFLKGV_ 0 0 0 REV__tr|U7T5U0|U7T5U0_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00389PE=4SV=1 REV__tr|U7T5U0|U7T5U0_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00389PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6761474609375 2 523.342052 1044.66955 -0.20994 -0.00010987 1.3411 0.00070183 1.1311 0.00059196 523.3427996847834 131.8 0.42001 127.16 126.92 127.34 -4.6399 14 11 2 0 0 0 0.77734 1 25967 25967 13.906 0 1 1866900 + 23658 25424 15565 15570 23463 23463 0.14900373650425536 KLLRQEKT 8 Unmodified _KLLRQEKT_ 0 0 0 ENSG00000163541|ENST00000393868|SUCLG1 ENSG00000163541|ENST00000393868|SUCLG1 ENSG00000163541|ENST00000393868|SUCLG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.7293395996094 2 508.316566 1014.61858 0.20718 0.00010531 -2.9943 -0.0015221 -2.7871 -0.0014168 508.3151262799202 155.6 0.1423 155.6 155.55 155.7 0 5 3 2 0 0 0 8448 1 31211 31211 1.3295 1.3295 1 2281300 23659 5440 15566 15571 23464 23464 0.11185424605560002 KLLRRRFRLLL 11 Unmodified _KLLRRRFRLLL_ 0 0 0 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3718872070312 2 742.506629 1482.99871 NaN NaN NaN NaN NaN NaN NaN 157.76 1 152.97 152.47 153.47 -4.7885 0 0 0 0.23698 1 31375 31375 0 0 1 23660 4219 15567 15572 23465 23465 0.27652623000835774 KLLRRRFRLLL 11 Unmodified _KLLRRRFRLLL_ 0 0 0 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3992309570312 2 742.506629 1482.99871 NaN NaN NaN NaN NaN NaN NaN 157.81 1 153.02 152.52 153.52 -4.7885 0 0 0 0.23698 1 31385 31385 0.30703 0 1 23661 4219 15567 15572 23466 23466 0.27652623000835774 KLLRRRFRLLL 11 Unmodified _KLLRRRFRLLL_ 0 0 0 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3903198242188 2 742.506629 1482.99871 NaN NaN NaN NaN NaN NaN NaN 165.56 1 160.58 160.08 161.08 -4.9811 0 0 0 0.22632 1 32371 32371 0.094841 0 1 23662 4219 15567 15572 23467 23467 0.27652623000835774 KLLRRRFRLLL 11 Unmodified _KLLRRRFRLLL_ 0 0 0 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3903198242188 2 742.506629 1482.99871 NaN NaN NaN NaN NaN NaN NaN 165.58 1 160.59 160.09 161.09 -4.9811 0 0 0 0.23698 1 32374 32374 0.30703 0 1 23663 4219 15567 15572 23468 23468 0.27652623000835774 KLLRVHIVII 10 Unmodified _KLLRVHIVII_ 0 0 0 REV__ENST00000521433.1_1_8:89341227-89721666:+|nuORF REV__ENST00000521433.1_1_8:89341227-89721666:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2962646484375 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 149.52 1 144.32 143.82 144.82 -5.1994 0 0 0 0.22588 1 28963 28963 0.40072 0 1 + 23664 22645 15568 15573 23469 23469 0.22939988766870556 KLLSEKEVH 9 Unmodified _KLLSEKEVH_ 0 0 0 TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;ENSG00000047410|ENST00000367478|TPR TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2752685546875 2 541.813856 1081.61316 0.26716 0.00014475 0.70883 0.00038405 0.97599 0.00052881 541.8141439798118 18.316 0.31218 18.316 18.161 18.474 0 22 8 4 0 0 0 0.84582 1 2914 2914 12.241 0 1 7128000 23665 1215 15569 15574 23470 23470 0.07561701023087153 KLLSKFYEL 9 Unmodified _KLLSKFYEL_ 0 0 0 USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;USP48|p.G702Wfs*5|1|0.12|ENSG00000090686|chr1:21706574-21706575|-/A|frameshift_variant;nc|ENSG00000090686|Q86UV5-2|USP48 USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2093505859375 3 380.893625 1139.65905 -0.43622 -0.00016615 0.40784 0.00015535 -0.028371 -1.0806E-05 380.89376241445274 124.72 1.004 120.07 119.6 120.6 -4.6495 74 27 4 0 0 0 0.11835 2 24012 23949;24012 60.47 57.839 1 10141000 23666 1792 15570 15575 23471;23472 23472 0.09480346205350543 KLLSKFYEL 9 Unmodified _KLLSKFYEL_ 0 0 0 USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;USP48|p.G702Wfs*5|1|0.12|ENSG00000090686|chr1:21706574-21706575|-/A|frameshift_variant;nc|ENSG00000090686|Q86UV5-2|USP48 USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 380.893625 1139.65905 -0.13863 -5.2803E-05 0.055839 2.1269E-05 -0.082789 -3.1534E-05 380.893618696304 120.44 0.81877 120.44 120.11 120.93 0 0.27717 -7.5683E-05 NaN 60.47 54 22 3 NaN NaN NaN NaN 0 NaN NaN 0 10296000 23667 1792 15570 15575 0.09480346205350543 KLLSKFYEL 9 Unmodified _KLLSKFYEL_ 0 0 0 USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;USP48|p.G702Wfs*5|1|0.12|ENSG00000090686|chr1:21706574-21706575|-/A|frameshift_variant;nc|ENSG00000090686|Q86UV5-2|USP48 USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.893625 1139.65905 -0.071219 -2.7127E-05 0.2419 9.2138E-05 0.17068 6.5011E-05 380.8936351734741 124.67 0.79651 120.08 119.64 120.44 -4.5984 -0.090127 0.00013693 NaN 60.47 68 22 4 NaN NaN NaN NaN 0 NaN NaN 0 10808000 23668 1792 15570 15575 0.09480346205350543 KLLSKFYEL 9 Unmodified _KLLSKFYEL_ 0 0 0 USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;USP48|p.G702Wfs*5|1|0.12|ENSG00000090686|chr1:21706574-21706575|-/A|frameshift_variant;nc|ENSG00000090686|Q86UV5-2|USP48 USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.893625 1139.65905 0.36669 0.00013967 -0.34616 -0.00013185 0.020526 7.8184E-06 380.89346333356895 124.85 0.84468 120.08 119.59 120.44 -4.7681 -0.087805 -0.00053504 NaN 60.47 59 23 3 NaN NaN NaN NaN 0 NaN NaN 0 7435600 23669 1792 15570 15575 0.09480346205350543 KLLSQYERS 9 Unmodified _KLLSQYERS_ 0 0 0 REV__MMRN1|p.F371Y|1|0.09|ENSG00000138722|chr4:89927951-89927951|T/A|missense_variant REV__MMRN1|p.F371Y|1|0.09|ENSG00000138722|chr4:89927951-89927951|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2079772949219 3 375.208384 1122.60332 NaN NaN NaN NaN NaN NaN NaN 160.9 1 155.67 155.17 156.17 -5.2299 0 0 0 0.19657 1 31246 31246 4.897 0 1 + 23670 23868 15571 15576 23473 23473 0.04692513017721467 KLLVKKRL 8 Unmodified _KLLVKKRL_ 0 0 0 REV__nc|ENSG00000138193|Q9P212-2|PLCE1 REV__nc|ENSG00000138193|Q9P212-2|PLCE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 499.00579833984375 2 499.365862 996.717171 NaN NaN NaN NaN NaN NaN NaN 163.01 1 157.82 157.32 158.32 -5.1878 0 0 0 0.23899 1 31689 31689 1.3295 0 1 + 23671 16447 15572 15577 23474 23474 0.21868072641268554 KLLVRIILLY 10 Unmodified _KLLVRIILLY_ 0 0 0 REV__ENSG00000152207|ENST00000682523|CYSLTR2 REV__ENSG00000152207|ENST00000682523|CYSLTR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.762939453125 2 622.428659 1242.84277 NaN NaN NaN NaN NaN NaN NaN 95.775 1 95.775 95.275 96.275 0 0 0 0 2.8426 1 18761 18761 0.043787 0 1 + 23672 17098 15573 15578 23475 23475 0.23105739706852546 KLLWLLLW 8 Unmodified _KLLWLLLW_ 0 0 0 nc|ENSG00000286920|Q5STR5|SMIM40 nc|ENSG00000286920|Q5STR5|SMIM40 nc|ENSG00000286920|Q5STR5|SMIM40 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.56976318359375 3 362.235434 1083.68447 -0.28321 -0.00010259 0.30211 0.00010944 0.018909 6.8495E-06 362.23553488486806 18.455 0.35051 18.455 18.266 18.616 0 19 9 3 0 0 0 0.8956 1 2999 2999 1.7423 0 1 3615800 23673 12652 15574 15579 23476 23476 0.1459786551840807 KLMDLDVEQL 10 Unmodified _KLMDLDVEQL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.275634765625 2 602.318114 1202.62167 0.3944 0.00023755 -0.055012 -3.3135E-05 0.33939 0.00020442 602.3181627420952 147.8 0.65254 147.8 147.54 148.19 0 28 18 2 0 0 0 0.01714 2 29596 29533;29596 96.936 32.975 1 7832600 23674 3751 15575 15580 23477;23478 23478 0.028468868774098155 KLMDLDVEQL 10 Unmodified _KLMDLDVEQL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.300048828125 2 602.318114 1202.62167 1.1392 0.00068618 -0.88693 -0.00053421 0.25231 0.00015197 602.317738490012 152.39 0.71991 147.64 147.28 148 -4.7523 47 19 3 0 0 0 0.00097621 2 30244 30244;30350 117.76 35.231 1 14063000 23675 3751 15575 15580 23479;23480 23479 0.028468868774098155 KLMDLDVEQL 10 Unmodified _KLMDLDVEQL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2931518554688 2 602.318114 1202.62167 0.4934 0.00029718 -0.11153 -6.7176E-05 0.38187 0.00023001 602.3180175484719 152.89 0.76883 147.63 147.32 148.09 -5.2669 47 21 3 0 0 0 0.0057195 2 29635 29600;29635 90.884 81.991 1 16563000 23676 3751 15575 15580 23481;23482 23482 0.028468868774098155 KLMDLDVEQL 10 Unmodified _KLMDLDVEQL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3013916015625 2 602.318114 1202.62167 0.45668 0.00027507 0.084074 5.0639E-05 0.54075 0.00032571 602.318196463885 152.95 0.8187 147.73 147.22 148.04 -5.2209 39 22 2 0 0 0 0.0073143 3 29610 29610;29615;29670 107.1 63.091 1 11155000 23677 3751 15575 15580 23483;23484;23485 23483 0.028468868774098155 KLMKKLLE 8 Unmodified _KLMKKLLE_ 0 0 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 501.82293701171875 2 501.822638 1001.63072 NaN NaN NaN NaN NaN NaN NaN 169.48 1 169.48 168.98 169.98 0 0 0 0 0.23107 1 34791 34791 1.4551 0 1 23678 2308 15576 15581 23486 23486 0.12997325024400652 KLMKKLVKK 9 Unmodified _KLMKKLVKK_ 0 0 0 REV__ATE1|p.G197Vfs*3|1|0.03|ENSG00000107669|chr10:121902614-121902615|-/A|frameshift_variant REV__ATE1|p.G197Vfs*3|1|0.03|ENSG00000107669|chr10:121902614-121902615|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 558.462646484375 2 558.38848 1114.76241 NaN NaN NaN NaN NaN NaN NaN 166.07 1 161.09 160.59 161.59 -4.9811 0 0 0 0.23508 1 32517 32517 3.9444 1.8846 1 + 23679 13139 15577 15582 23487 23487 0.20961555112148744 KLMWGGALLY 10 Unmodified _KLMWGGALLY_ 0 0 0 REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2 REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3182983398438 2 576.31772 1150.62089 NaN NaN NaN NaN NaN NaN NaN 107.47 1 103.15 102.65 103.65 -4.32 0 0 0 2.8426 1 21168 21168 3.5927 3.3273 1 + 23680 16971 15578 15583 23488 23488 0.05160137019015565 KLNDIKEKV 9 Unmodified _KLNDIKEKV_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.5394287109375 3 362.888763 1085.64446 -0.17959 -6.5173E-05 0.088223 3.2015E-05 -0.091371 -3.3157E-05 362.8887336304207 28.12 0.24644 28.12 28.006 28.252 0 9 6 2 0 0 0 0.45972 1 4989 4989 8.1555 3.2585 1 457730 23681 2747 15579 15584 23489 23489 0.10506274057183873 KLNDIKEKV 9 Unmodified _KLNDIKEKV_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 362.888763 1085.64446 0.27185 9.8651E-05 -0.15253 -5.535E-05 0.11932 4.3301E-05 362.8886137491098 30.021 0.38341 27.904 27.735 28.119 -2.1167 -0.11984 -0.00019394 NaN 8.1555 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 768580 23682 2747 15579 15584 0.10506274057183873 KLNDIKEKV 9 Unmodified _KLNDIKEKV_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 362.888763 1085.64446 0.34541 0.00012534 -0.094555 -3.4313E-05 0.25085 9.1031E-05 362.88865949836253 29.955 0.38737 28.062 27.856 28.243 -1.8928 0.03785 -0.00013083 NaN 8.1555 24 10 4 NaN NaN NaN NaN 0 NaN NaN 0 748230 23683 2747 15579 15584 0.10506274057183873 KLNDIKEKV 9 Unmodified _KLNDIKEKV_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 362.888763 1085.64446 -0.13078 -4.7458E-05 0.2193 7.9582E-05 0.088525 3.2125E-05 362.88883992123726 30.084 0.31484 28.01 27.831 28.146 -2.0743 -0.014031 0.00021086 NaN 8.1555 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 654640 23684 2747 15579 15584 0.10506274057183873 KLNENIKNA 9 Unmodified _KLNENIKNA_ 0 0 0 ENST00000424137.2_1_20:34340744-34341539:+|nuORF;ENSG00000197498|ENST00000441448|RPF2 ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENST00000424137.2_1_20:34340744-34341539:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2676391601562 2 522.29583 1042.57711 -0.92643 -0.00048387 1.1165 0.00058317 0.19012 9.9298E-05 522.2962322318104 21.004 0.65767 19.62 19.027 19.684 -1.3847 22 18 2 0 0 0 0.50419 1 3269 3269 19.362 7.1213 1 753810 23685 7373 15580 15585 23490 23490 0.057522438462456194 KLNENIKNA 9 Unmodified _KLNENIKNA_ 0 0 0 ENST00000424137.2_1_20:34340744-34341539:+|nuORF;ENSG00000197498|ENST00000441448|RPF2 ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENST00000424137.2_1_20:34340744-34341539:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2667846679688 2 522.29583 1042.57711 -0.68491 -0.00035773 0.46943 0.00024518 -0.21548 -0.00011254 522.2960616437985 21.303 0.3137 19.582 19.427 19.74 -1.7211 14 8 2 0 0 0 0.33201 1 3328 3328 42.312 18.523 1 514600 23686 7373 15580 15585 23491 23491 0.057522438462456194 KLNEYEKESIK 11 Unmodified _KLNEYEKESIK_ 0 0 0 REV__tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1 REV__tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.2435607910156 3 460.917158 1379.72965 NaN NaN NaN NaN NaN NaN NaN 13.422 1 13.422 12.922 13.922 0 0 0 0 0.22632 1 1937 1937 0.50596 0 1 + 23687 25086 15581 15586 23492 23492 0.05496974732318449 KLNHHQRI 8 Unmodified _KLNHHQRI_ 0 0 0 ENST00000519524.1_1_8:42213005-42218898:+|nuORF;ENSG00000070501|ENST00000265421|POLB ENST00000519524.1_1_8:42213005-42218898:+|nuORF ENST00000519524.1_1_8:42213005-42218898:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6842041015625 2 523.304324 1044.5941 -1.1413 -0.00059727 -0.14099 -7.3778E-05 -1.2823 -0.00067105 523.3042335527247 15.848 0.14131 14.626 14.537 14.678 -1.2219 5 3 2 0 0 0 0.89967 1 2236 2236 0.12286 0 1 404110 23688 1433 15582 15587 23493 23493 0.07358209242693192 KLNHHQRI 8 Unmodified _KLNHHQRI_ 0 0 0 ENST00000519524.1_1_8:42213005-42218898:+|nuORF;ENSG00000070501|ENST00000265421|POLB ENST00000519524.1_1_8:42213005-42218898:+|nuORF ENST00000519524.1_1_8:42213005-42218898:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.304324 1044.5941 0.081691 4.2749E-05 -1.6486 -0.00086275 -1.567 -0.00082 523.3034902824684 14.825 0.21137 14.825 14.667 14.878 0 0.1879 -0.0010405 NaN 0.12286 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 740420 23689 1433 15582 15587 0.07358209242693192 KLNHHQRI 8 Unmodified _KLNHHQRI_ 0 0 0 ENST00000519524.1_1_8:42213005-42218898:+|nuORF;ENSG00000070501|ENST00000265421|POLB ENST00000519524.1_1_8:42213005-42218898:+|nuORF ENST00000519524.1_1_8:42213005-42218898:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.304324 1044.5941 -0.70152 -0.00036711 -0.99935 -0.00052296 -1.7009 -0.00089007 523.3036761068275 15.783 0.17651 14.567 14.479 14.655 -1.2159 -0.069223 -0.0003609 NaN 0.12286 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 450550 23690 1433 15582 15587 0.07358209242693192 KLNHHQRI 8 Unmodified _KLNHHQRI_ 0 0 0 ENST00000519524.1_1_8:42213005-42218898:+|nuORF;ENSG00000070501|ENST00000265421|POLB ENST00000519524.1_1_8:42213005-42218898:+|nuORF ENST00000519524.1_1_8:42213005-42218898:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.304324 1044.5941 -1.4922 -0.00078085 -0.24357 -0.00012746 -1.7357 -0.00090831 523.3041773051247 15.882 0.13774 14.528 14.443 14.581 -1.3534 -0.10826 0.0004301 NaN 0.12286 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 365810 23691 1433 15582 15587 0.07358209242693192 KLNKKLYEL 9 Unmodified _KLNKKLYEL_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000530567.1_1_11:64977449-64978754:+|nuORF;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.2069396972656 3 383.572775 1147.69649 -0.58473 -0.00022428 0.52348 0.00020079 -0.061241 -2.349E-05 383.5729404967104 58.206 0.65243 55.001 54.612 55.264 -3.2052 40 18 3 0 0 0 0.38759 1 10908 10908 22.736 0 1 1699800 23692 1105 15583 15588 23494 23494 0.12855437470943798 KLNKKLYEL 9 Unmodified _KLNKKLYEL_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000530567.1_1_11:64977449-64978754:+|nuORF;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 383.572775 1147.69649 -0.22044 -8.4555E-05 0.13283 5.0952E-05 -0.087606 -3.3603E-05 383.57282829929846 55.179 0.52695 55.179 54.877 55.404 0 0.17234 -0.00010304 NaN 22.736 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1033000 23693 1105 15583 15588 0.12855437470943798 KLNKKLYEL 9 Unmodified _KLNKKLYEL_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000530567.1_1_11:64977449-64978754:+|nuORF;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 383.572775 1147.69649 -0.32054 -0.00012295 0.23147 8.8787E-05 -0.08907 -3.4165E-05 383.5728842759996 57.892 0.66847 54.981 54.57 55.238 -2.9105 -0.025288 1.0465E-05 NaN 22.736 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1813200 23694 1105 15583 15588 0.12855437470943798 KLNKKLYEL 9 Unmodified _KLNKKLYEL_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000530567.1_1_11:64977449-64978754:+|nuORF;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 383.572775 1147.69649 0.074301 2.85E-05 -0.024974 -9.5794E-06 0.049327 1.892E-05 383.5727362090008 58.117 0.70517 54.865 54.465 55.171 -3.2517 -0.14162 -0.00028463 NaN 22.736 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1725600 23695 1105 15583 15588 0.12855437470943798 KLNLEVDP 8 Unmodified _KLNLEVDP_ 0 0 0 REV__AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant REV__AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2463073730469 2 464.260925 926.507297 0.35814 0.00016627 -0.24851 -0.00011537 0.10963 5.0897E-05 464.26077059877883 106.73 1.2545 106.73 106.26 107.51 0 71 35 3 0 0 0 0.64227 1 20961 20961 19.439 1.304 1 7033900 + 23696 12987 15584 15589 23495 23495 0.04110365177609765 KLPAQGRK 8 Unmodified _KLPAQGRK_ 0 0 0 ENST00000537098.7_1_16:81743400-81743448:+|nuORF ENST00000537098.7_1_16:81743400-81743448:+|nuORF ENST00000537098.7_1_16:81743400-81743448:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.7602844238281 2 449.285069 896.555585 -0.11765 -5.286E-05 0.29969 0.00013464 0.18203 8.1784E-05 449.28517440442477 54.076 0.24475 50.938 50.783 51.027 -3.1377 15 6 3 0 0 0 8448 1 10011 10011 10.074 9.4471 1 16923000 23697 11034 15585 15590 23496 23496 0.10316903608190842 KLPAQGRK 8 Unmodified _KLPAQGRK_ 0 0 0 ENST00000537098.7_1_16:81743400-81743448:+|nuORF ENST00000537098.7_1_16:81743400-81743448:+|nuORF ENST00000537098.7_1_16:81743400-81743448:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 449.285069 896.555585 0.35362 0.00015888 -0.029688 -1.3338E-05 0.32393 0.00014554 449.28494526858105 51.32 0.34233 51.32 51.165 51.507 0 0.27226 -0.00025168 NaN 10.074 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 15013000 23698 11034 15585 15590 0.10316903608190842 KLPAQGRK 8 Unmodified _KLPAQGRK_ 0 0 0 ENST00000537098.7_1_16:81743400-81743448:+|nuORF ENST00000537098.7_1_16:81743400-81743448:+|nuORF ENST00000537098.7_1_16:81743400-81743448:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 449.285069 896.555585 -0.34258 -0.00015392 0.36137 0.00016236 0.018786 8.4405E-06 449.2852612034292 53.88 0.27881 50.996 50.837 51.116 -2.8837 -0.051061 9.9715E-05 NaN 10.074 18 7 4 NaN NaN NaN NaN 0 NaN NaN 0 18070000 23699 11034 15585 15590 0.10316903608190842 KLPAQGRK 8 Unmodified _KLPAQGRK_ 0 0 0 ENST00000537098.7_1_16:81743400-81743448:+|nuORF ENST00000537098.7_1_16:81743400-81743448:+|nuORF ENST00000537098.7_1_16:81743400-81743448:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.285069 896.555585 0.00949 4.2637E-06 0.3252 0.00014611 0.33469 0.00015037 449.28511790167136 54.071 0.27693 50.936 50.801 51.078 -3.1352 -0.11177 6.7214E-05 NaN 10.074 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 13335000 23700 11034 15585 15590 0.10316903608190842 KLPAVKKPKPK 11 Unmodified _KLPAVKKPKPK_ 0 0 0 REV__CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant REV__CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 617.4547119140625 2 617.423908 1232.83326 NaN NaN NaN NaN NaN NaN NaN 165.69 1 160.74 160.24 161.24 -4.9484 0 0 0 0.22632 1 32393 32393 0.50596 0 1 + 23701 13399 15586 15591 23497 23497 0.2261597142132814 KLPDGTWNL 9 Unmodified _KLPDGTWNL_ 0 0 0 nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2796020507812 2 522.279649 1042.54475 -0.12053 -6.2948E-05 0.64211 0.00033536 0.52159 0.00027241 522.2798767458386 126.73 0.77013 122.11 121.73 122.5 -4.6172 45 21 3 0 0 0 0.023341 2 25020 24967;25020 88.954 17.82 1 3638600 23702 5128 15587 15592 23498;23499 23499 0.025174564432290936 KLPDGTWNL 9 Unmodified _KLPDGTWNL_ 0 0 0 nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.279296875 2 522.279649 1042.54475 -0.46755 -0.00024419 0.95888 0.0005008 0.49133 0.00025661 522.2802123177073 126.96 0.70601 122.17 121.74 122.45 -4.7958 34 19 2 0 0 0 0.029139 1 24356 24356 82.529 17.294 1 2314800 23703 5128 15587 15592 23500 23500 0.025174564432290936 KLPKKKKPV 9 Unmodified _KLPKKKKPV_ 0 0 0 REV__ENSG00000104332|ENST00000220772|SFRP1 REV__ENSG00000104332|ENST00000220772|SFRP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2672729492188 2 533.378969 1064.74339 0.27715 0.00014783 1.4599 0.00077865 1.737 0.00092648 533.3805348991623 75.529 0.10326 75.529 75.442 75.546 0 4 2 2 0 0 0 0.88442 1 14660 14660 0 0 1 1597100 + 23704 14915 15588 15593 23501 23501 0.21360341812737715 KLPLAARSAGP 11 Unmodified _KLPLAARSAGP_ 0 0 0 ENST00000507297.5_1_5:138861213-138862139:-|nuORF;ENST00000514348.1_1_5:138861213-138862244:-|nuORF ENST00000507297.5_1_5:138861213-138862139:-|nuORF ENST00000507297.5_1_5:138861213-138862139:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1911315917969 3 360.888986 1079.64513 0.42945 0.00015498 -0.82844 -0.00029898 -0.39899 -0.00014399 360.8888233650592 22.721 0.31305 21.168 21.025 21.338 -1.5532 13 8 2 0 0 0 0.66234 1 3871 3871 0.50596 0.50596 1 407300 23705 10698 15589 15594 23502 23502 0.10849113496897189 KLPLRFKCQ 9 Unmodified _KLPLRFKCQ_ 0 0 0 REV__nc|ENSG00000122507|Q3SYG4-2|BBS9 REV__nc|ENSG00000122507|Q3SYG4-2|BBS9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 378.2270202636719 3 378.226833 1131.65867 NaN NaN NaN NaN NaN NaN NaN 176.78 1 171.88 171.38 172.38 -4.9008 0 0 0 0.23508 1 35250 35250 1.0715 0 1 + 23706 15693 15590 15595 23503 23503 0.09810648004463474 KLPSLQLQQP 10 Unmodified _KLPSLQLQQP_ 0 0 0 REV__ENST00000459969.5_1_2:10262865-10264033:+|nuORF REV__ENST00000459969.5_1_2:10262865-10264033:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.330810546875 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 169.35 1 164.48 163.98 164.98 -4.873 0 0 0 0.22588 1 33442 33442 9.3831 1.2276 1 + 23707 18256 15591 15596 23504 23504 0.10169962948521061 KLPTPTSSV 9 Unmodified _KLPTPTSSV_ 0 0 0 nc|ENSG00000095787|Q9BTA9-3|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC nc|ENSG00000095787|Q9BTA9-3|WAC nc|ENSG00000095787|Q9BTA9-3|WAC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25567626953125 2 465.26875 928.522947 -0.07421 -3.4528E-05 -0.59836 -0.0002784 -0.67257 -0.00031293 465.26839725998667 60.259 0.9317 57.326 56.785 57.717 -2.9333 48 26 2 0 0 0 0.41266 1 11659 11659 24.991 3.2443 1 1862900 23708 1869 15592 15597 23505 23505 0.05582651694658125 KLPWEYFYIFY 11 Unmodified _KLPWEYFYIFY_ 0 0 0 ENST00000454158.6_1_4:37614769-37614952:-|nuORF ENST00000454158.6_1_4:37614769-37614952:-|nuORF ENST00000454158.6_1_4:37614769-37614952:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.690185546875 3 523.598989 1567.77514 0.097817 5.1217E-05 -1.2399 -0.00064919 -1.142 -0.00059797 523.9332525094494 119.95 0.17934 115.43 115.32 115.5 -4.5221 6 4 2 0 0 0 0.89074 1 23638 23638 0.58532 0.55911 1 1370000 23709 10010 15593 15598 23506 23506 0.013962449853806902 KLQEALKTI 9 Unmodified _KLQEALKTI_ 0 0 0 PRR11|p.D222Mfs*6|1|0.37|ENSG00000068489|chr17:59194768-59194768|A/-|frameshift_variant;ENSG00000068489|ENST00000262293|PRR11 PRR11|p.D222Mfs*6|1|0.37|ENSG00000068489|chr17:59194768-59194768|A/-|frameshift_variant PRR11|p.D222Mfs*6|1|0.37|ENSG00000068489|chr17:59194768-59194768|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2630004882812 2 522.326599 1042.63865 0.37309 0.00019488 -0.52469 -0.00027406 -0.1516 -7.9185E-05 522.3261098473317 67.364 0.40883 64.037 63.866 64.275 -3.3268 20 11 2 0 0 0 0.74927 1 12701 12701 18.373 0 1 720140 23710 1405 15594 15599 23507 23507 0.11903175545512568 KLQEKVELL 9 Unmodified _KLQEKVELL_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.8964538574219 3 367.228897 1098.66486 -0.32789 -0.00012041 0.5255 0.00019298 0.19761 7.2568E-05 367.22906188319644 88.141 0.53488 84.348 84.052 84.587 -3.7926 33 14 3 0 0 0 0.058839 1 17232 17232 60.47 24.343 1 4359200 23711 5064 15595 15600 23508 23508 0.1194744471699778 KLQEKVELL 9 Unmodified _KLQEKVELL_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.5415954589844 3 367.228897 1098.66486 -0.50453 -0.00018528 0.57974 0.0002129 0.07521 2.7619E-05 367.2291023787819 88.162 0.62467 84.412 84.118 84.743 -3.7501 38 17 3 0 0 0 0.1428 1 16906 16906 37.075 14.338 1 3893200 23712 5064 15595 15600 23509 23509 0.1194744471699778 KLQEKVELL 9 Unmodified _KLQEKVELL_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 367.228897 1098.66486 0.36491 0.00013401 -0.17365 -6.3768E-05 0.19126 7.0237E-05 367.2287724388965 88.356 0.55263 84.361 84.083 84.635 -3.9953 -0.012764 -0.00051838 NaN 60.47 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3007600 23713 5064 15595 15600 0.1194744471699778 KLQEVGQVSV 10 Unmodified _KLQEVGQVSV_ 0 0 0 nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-2|ITGAV nc|ENSG00000138448|P06756-2|ITGAV MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7861328125 2 543.811313 1085.60807 0.13839 7.5256E-05 0.074855 4.0707E-05 0.21324 0.00011596 543.8113134818121 70.368 0.66312 70.368 70.068 70.732 0 40 18 3 0 0 0 0.016148 3 13645 13644;13645;13674 100.09 44.588 1 6466100 23714 4173 15596 15601 23510;23511;23512 23511 0.06869397160471635 KLQEVGQVSV 10 Unmodified _KLQEVGQVSV_ 0 0 0 nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-2|ITGAV nc|ENSG00000138448|P06756-2|ITGAV MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7852783203125 2 543.811313 1085.60807 0.12056 6.5562E-05 0.092901 5.0521E-05 0.21346 0.00011608 543.8113649346096 73.474 0.63991 70.164 69.85 70.489 -3.3107 40 17 3 0 0 0 0.00016737 3 14314 14309;14314;14358 125.04 69.535 1 16963000 23715 4173 15596 15601 23513;23514;23515 23514 0.06869397160471635 KLQEVGQVSV 10 Unmodified _KLQEVGQVSV_ 0 0 0 nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-2|ITGAV nc|ENSG00000138448|P06756-2|ITGAV MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7933959960938 2 543.811313 1085.60807 0.22674 0.0001233 0.037946 2.0636E-05 0.26469 0.00014394 543.8113289208497 73.864 0.79853 70.187 69.824 70.623 -3.6764 48 22 3 0 0 0 2.7432E-07 3 13947 13924;13947;14017 148.27 84.308 1 10750000 23716 4173 15596 15601 23516;23517;23518 23517 0.06869397160471635 KLQEVGQVSV 10 Unmodified _KLQEVGQVSV_ 0 0 0 nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-2|ITGAV nc|ENSG00000138448|P06756-2|ITGAV MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.781005859375 2 543.811313 1085.60807 0.46066 0.00025051 -0.19555 -0.00010634 0.26511 0.00014417 543.8112068338511 73.806 0.80861 70.212 69.867 70.676 -3.594 52 22 3 0 0 0 1.1078 1 13998 13998 40.008 35.292 1 14367000 23717 4173 15596 15601 23519 23519 0.06869397160471635 KLQFCHQR 8 Unmodified _KLQFCHQR_ 0 0 0 ENSG00000162994|ENST00000401408|CLHC1;nc|ENSG00000162994|Q8NHS4-2|CLHC1 ENSG00000162994|ENST00000401408|CLHC1 ENSG00000162994|ENST00000401408|CLHC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 530.2797241210938 2 530.27946 1058.54437 NaN NaN NaN NaN NaN NaN NaN 167.64 1 162.7 162.2 163.2 -4.948 0 0 0 0.20896 1 32999 32999 18.135 3.2967 1 23718 5389 15597 15602 23520 23520 0.01743758242378135 KLQKDLEFVLK 11 Unmodified _KLQKDLEFVLK_ 0 0 0 nc|ENSG00000101004|Q9Y2I6-2|NINL;NINL|p.L1201Tfs*2|1|0.42|ENSG00000101004|chr20:25461617-25461618|-/T|frameshift_variant;ENSG00000101004|ENST00000278886|NINL;ENST00000461642.2_1_20:25469807-25477340:-|nuORF;ENST00000489780.5_1_20:25462577-25472157:-|nuORF nc|ENSG00000101004|Q9Y2I6-2|NINL nc|ENSG00000101004|Q9Y2I6-2|NINL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75982666015625 3 454.278139 1359.81259 -0.067959 -3.0872E-05 0.39597 0.00017988 0.32801 0.00014901 454.27829885028154 128.94 0.59058 124.31 124.01 124.6 -4.6292 30 16 2 0 0 0 0.88374 1 25452 25452 5.4027 1.5264 1 4602400 23719 2032 15598 15603 23521 23521 0.14707336250967273 KLQKDLEFVLK 11 Unmodified _KLQKDLEFVLK_ 0 0 0 nc|ENSG00000101004|Q9Y2I6-2|NINL;NINL|p.L1201Tfs*2|1|0.42|ENSG00000101004|chr20:25461617-25461618|-/T|frameshift_variant;ENSG00000101004|ENST00000278886|NINL;ENST00000461642.2_1_20:25469807-25477340:-|nuORF;ENST00000489780.5_1_20:25462577-25472157:-|nuORF nc|ENSG00000101004|Q9Y2I6-2|NINL nc|ENSG00000101004|Q9Y2I6-2|NINL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75982666015625 3 454.278139 1359.81259 0.043769 1.9883E-05 0.11256 5.1133E-05 0.15633 7.1016E-05 454.27824137954946 129.16 0.58662 124.34 124.06 124.64 -4.817 36 16 3 0 0 0 0.8786 1 24803 24803 5.4027 5.1373 1 3058400 23720 2032 15598 15603 23522 23522 0.14707336250967273 KLQKDLEFVLK 11 Unmodified _KLQKDLEFVLK_ 0 0 0 nc|ENSG00000101004|Q9Y2I6-2|NINL;NINL|p.L1201Tfs*2|1|0.42|ENSG00000101004|chr20:25461617-25461618|-/T|frameshift_variant;ENSG00000101004|ENST00000278886|NINL;ENST00000461642.2_1_20:25469807-25477340:-|nuORF;ENST00000489780.5_1_20:25462577-25472157:-|nuORF nc|ENSG00000101004|Q9Y2I6-2|NINL nc|ENSG00000101004|Q9Y2I6-2|NINL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75994873046875 3 454.278139 1359.81259 0.12834 5.8301E-05 0.33445 0.00015193 0.46279 0.00021023 454.27839951874915 129.17 0.5565 124.43 124.19 124.74 -4.7408 37 15 3 0 0 0 0.87181 1 24874 24874 12.175 0 1 1809300 23721 2032 15598 15603 23523 23523 0.14707336250967273 KLQKRWDWRWK 11 Unmodified _KLQKRWDWRWK_ 0 0 0 nc|ENSG00000166321|Q86X67-4|NUDT13 nc|ENSG00000166321|Q86X67-4|NUDT13 nc|ENSG00000166321|Q86X67-4|NUDT13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.37353515625 2 815.459876 1628.9052 NaN NaN NaN NaN NaN NaN NaN 172.03 1 167.24 166.74 167.74 -4.7898 0 0 0 0.22632 1 35018 35018 0.00056442 0 1 23722 12437 15599 15604 23524 23524 0.11590278827702605 KLQKRWDWRWK 11 Unmodified _KLQKRWDWRWK_ 0 0 0 nc|ENSG00000166321|Q86X67-4|NUDT13 nc|ENSG00000166321|Q86X67-4|NUDT13 nc|ENSG00000166321|Q86X67-4|NUDT13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7820434570312 3 543.975676 1628.9052 0.17094 9.2986E-05 3.4122 0.0018561 3.5831 0.0019491 544.3123459865884 154.34 0.31461 149.06 148.84 149.15 -5.2833 9 8 2 0 0 0 0.89122 1 29932 29932 0.50596 0.47975 1 2411200 23723 12437 15599 15604 23525 23525 0.11590278827702605 KLQVVVMV 8 Unmodified _KLQVVVMV_ 0 0 0 ENST00000264331.8_2_3:25678746-25679682:-|nuORF ENST00000264331.8_2_3:25678746-25679682:-|nuORF ENST00000264331.8_2_3:25678746-25679682:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2383728027344 2 458.288431 914.562309 NaN NaN NaN NaN NaN NaN NaN 94.348 1 90.504 90.004 91.004 -3.844 0 0 0 0.21486 1 18099 18099 5.2307 0 1 23724 8337 15600 15605 23526 23526 0.10161080444538584 KLRAGKHQ 8 Unmodified _KLRAGKHQ_ 0 0 0 ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant;ARAP2|p.N1365Ifs*21|1|0.42|ENSG00000047365|chr4:36114232-36114232|T/-|frameshift_variant;ENSG00000047365|ENST00000303965|ARAP2 ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 469.2901611328125 2 469.288143 936.561733 NaN NaN NaN NaN NaN NaN NaN 154.75 1 154.75 154.25 155.25 0 0 0 0 0.21486 1 31016 31016 8.5933 3.3626 1 23725 191 15601 15606 23527 23527 0.09091421839696068 KLRAICLD 8 Unmodified _KLRAICLD_ 0 0 0 USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X|p.K1773Nfs*9|1|0.28|ENSG00000124486|chrX:41214693-41214693|A/-|frameshift_variant;USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.18560791015625 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 103.16 1 98.978 98.478 99.478 -4.1861 0 0 0 0.21486 1 20279 20279 1.6526 0 1 23726 3317 15602 15607 23528 23528 0.06402721779318199 KLRAICLD 8 Unmodified _KLRAICLD_ 0 0 0 USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X|p.K1773Nfs*9|1|0.28|ENSG00000124486|chrX:41214693-41214693|A/-|frameshift_variant;USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1839599609375 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 103.88 1 99.658 99.158 100.16 -4.2183 0 0 0 0.21486 1 20425 20425 1.6526 0 1 23727 3317 15602 15607 23529 23529 0.06402721779318199 KLRALTDLF 9 Unmodified _KLRALTDLF_ 0 0 0 REV__nc|ENSG00000160683|P32302-2|CXCR5 REV__nc|ENSG00000160683|P32302-2|CXCR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012023925781 3 359.553603 1075.63898 0.20147 7.2439E-05 -0.067227 -2.4172E-05 0.13424 4.8267E-05 359.5535677072873 94.081 0.73131 89.937 89.651 90.383 -4.1435 39 16 3 0 0 0 0.6427 1 17989 17989 10.151 1.995 1 5700200 + 23728 17427 15603 15608 23530 23530 0.10418595265332442 KLRALTDLF 9 Unmodified _KLRALTDLF_ 0 0 0 REV__nc|ENSG00000160683|P32302-2|CXCR5 REV__nc|ENSG00000160683|P32302-2|CXCR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017517089844 3 359.553603 1075.63898 -0.64087 -0.00023043 0.75422 0.00027118 0.11335 4.0755E-05 359.55384947997265 93.931 0.86348 90.087 89.674 90.538 -3.844 46 20 3 0 0 0 0.58077 1 17980 17980 14.405 2.1647 1 5875800 + 23729 17427 15603 15608 23531 23531 0.10418595265332442 KLRALTDLF 9 Unmodified _KLRALTDLF_ 0 0 0 REV__nc|ENSG00000160683|P32302-2|CXCR5 REV__nc|ENSG00000160683|P32302-2|CXCR5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.553603 1075.63898 0.20147 7.2439E-05 -0.067227 -2.4172E-05 0.13424 4.8267E-05 359.5535677072873 94.081 0.73131 89.937 89.651 90.383 -4.1435 -0.093224 -0.00043225 NaN 14.405 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5700200 + 23730 17427 15603 15608 0.10418595265332442 KLRALTDLF 9 Unmodified _KLRALTDLF_ 0 0 0 REV__nc|ENSG00000160683|P32302-2|CXCR5 REV__nc|ENSG00000160683|P32302-2|CXCR5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 359.553603 1075.63898 -0.64087 -0.00023043 0.75422 0.00027118 0.11335 4.0755E-05 359.55384947997265 93.931 0.86348 90.087 89.674 90.538 -3.844 0.056968 0.00045382 NaN 14.405 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5875800 + 23731 17427 15603 15608 0.10418595265332442 KLRDSLELL 9 Unmodified _KLRDSLELL_ 0 0 0 nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56 nc|ENSG00000136271|Q9NY93-2|DDX56 nc|ENSG00000136271|Q9NY93-2|DDX56 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7830810546875 2 543.829506 1085.64446 0.38186 0.00020766 -0.42765 -0.00023257 -0.04579 -2.4902E-05 543.8293050776572 117.24 0.58687 112.66 112.3 112.88 -4.5815 31 16 3 0 0 0 0.25976 1 22470 22470 22.621 20.707 1 1973100 23732 4000 15604 15609 23532 23532 0.10506274057183873 KLREDLERL 9 Unmodified _KLREDLERL_ 0 0 0 ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18 ENST00000496813.5_1_6:33239896-33244045:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 391.4649963378906 3 391.2313 1170.67207 -0.20447 -7.9993E-05 0.16198 6.3372E-05 -0.042484 -1.6621E-05 391.231351773583 60.663 0.99557 57.729 57.238 58.233 -2.9333 73 28 4 0 0 0 0.1428 1 11765 11765 36.127 13.391 1 32237000 23733 7808 15605 15610 23533 23533 0.09356177317408765 KLREDLERL 9 Unmodified _KLREDLERL_ 0 0 0 ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18 ENST00000496813.5_1_6:33239896-33244045:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 391.2313 1170.67207 -0.34286 -0.00013414 0.5767 0.00022562 0.23384 9.1486E-05 391.2315826981004 57.864 1.2542 57.864 57.057 58.312 0 0.12217 0.00044293 NaN 36.127 86 35 4 NaN NaN NaN NaN 0 NaN NaN 0 14846000 23734 7808 15605 15610 0.09356177317408765 KLREDLERL 9 Unmodified _KLREDLERL_ 0 0 0 ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18 ENST00000496813.5_1_6:33239896-33244045:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 391.2313 1170.67207 0.086158 3.3708E-05 -0.1971 -7.7111E-05 -0.11094 -4.3404E-05 391.23120750394656 61.074 0.87661 57.704 57.343 58.219 -3.3694 -0.037583 -0.00046528 NaN 36.127 76 24 4 NaN NaN NaN NaN 0 NaN NaN 0 21334000 23735 7808 15605 15610 0.09356177317408765 KLREDLERL 9 Unmodified _KLREDLERL_ 0 0 0 ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18 ENST00000496813.5_1_6:33239896-33244045:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 391.2313 1170.67207 -0.44249 -0.00017312 0.32789 0.00012828 -0.1146 -4.4836E-05 391.23141805627745 60.894 0.83613 57.67 57.386 58.222 -3.2237 -0.071951 0.0001509 NaN 36.127 75 23 4 NaN NaN NaN NaN 0 NaN NaN 0 20965000 23736 7808 15605 15610 0.09356177317408765 KLRGKFKKKK 10 Unmodified _KLRGKFKKKK_ 0 0 0 REV__ENSG00000169871|ENST00000306085|TRIM56 REV__ENSG00000169871|ENST00000306085|TRIM56 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7606811523438 2 630.934974 1259.8554 0.41084 0.00025921 4.2891 0.0027061 4.6999 0.0029654 631.4408972916093 160.29 0.17484 160.29 160.17 160.35 0 5 4 2 0 0 0 0.91149 1 32183 32183 1.4819 1.4819 1 1178300 + 23737 18123 15606 15611 23534 23534 0.23586195889697592 KLRGKFKKKK 10 Unmodified _KLRGKFKKKK_ 0 0 0 REV__ENSG00000169871|ENST00000306085|TRIM56 REV__ENSG00000169871|ENST00000306085|TRIM56 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7491455078125 2 630.934974 1259.8554 NaN NaN NaN NaN NaN NaN NaN 94.361 1 90.181 89.681 90.681 -4.1796 0 0 0 0.22588 1 17997 17997 0 0 1 + 23738 18123 15606 15611 23535 23535 0.23586195889697592 KLRHHHRRWRF 11 Unmodified _KLRHHHRRWRF_ 0 0 0 nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA;IL17RA|p.C768Lfs*3|1|0.15|ENSG00000177663|chr22:17109513-17109514|-/G|frameshift_variant;IL17RA|p.G767Afs*70|2|0.2|ENSG00000177663|chr22:17109514-17109514|G/-|frameshift_variant nc|ENSG00000177663|Q96F46-2|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7774658203125 3 543.646776 1627.9185 NaN NaN NaN NaN NaN NaN NaN 63.512 1 60.096 59.596 60.596 -3.4158 0 0 0 0.22632 1 11866 11866 0.094841 0 1 23739 6527 15607 15612 23536 23536 0.12965574450322492 KLRHHHRRWRF 11 Unmodified _KLRHHHRRWRF_ 0 0 0 nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA;IL17RA|p.C768Lfs*3|1|0.15|ENSG00000177663|chr22:17109513-17109514|-/G|frameshift_variant;IL17RA|p.G767Afs*70|2|0.2|ENSG00000177663|chr22:17109514-17109514|G/-|frameshift_variant nc|ENSG00000177663|Q96F46-2|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.777099609375 3 543.646776 1627.9185 NaN NaN NaN NaN NaN NaN NaN 156.67 1 151.38 150.88 151.88 -5.2854 0 0 0 0.23698 1 30395 30395 1.2148 1.2148 1 23740 6527 15607 15612 23537 23537 0.12965574450322492 KLRHHHRRWRF 11 Unmodified _KLRHHHRRWRF_ 0 0 0 nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA;IL17RA|p.C768Lfs*3|1|0.15|ENSG00000177663|chr22:17109513-17109514|-/G|frameshift_variant;IL17RA|p.G767Afs*70|2|0.2|ENSG00000177663|chr22:17109514-17109514|G/-|frameshift_variant nc|ENSG00000177663|Q96F46-2|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.796142578125 3 543.646776 1627.9185 NaN NaN NaN NaN NaN NaN NaN 164.43 1 159.39 158.89 159.89 -5.0446 0 0 0 0.23698 1 32065 32065 1.1098 0.33858 1 23741 6527 15607 15612 23538 23538 0.12965574450322492 KLRKGLVMH 9 Unmodified _KLRKGLVMH_ 0 0 0 REV__ENSG00000196305|ENST00000443024|IARS1 REV__ENSG00000196305|ENST00000443024|IARS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2716064453125 2 541.336778 1080.659 NaN NaN NaN NaN NaN NaN NaN 81.239 1 77.682 77.182 78.182 -3.557 0 0 0 0.19622 1 15863 15863 0.96228 0 1 + 23742 19232 15608 15613 23539 23539 0.12190067724350229 KLRKKWRMK 9 Unmodified _KLRKKWRMK_ 0 0 0 REV__ENSG00000139865|ENST00000553443|TTC6 REV__ENSG00000139865|ENST00000553443|TTC6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2518615722656 3 425.272777 1272.7965 NaN NaN NaN NaN NaN NaN NaN 152.56 1 147.38 146.88 147.88 -5.1759 0 0 0 0.23508 1 29570 29570 0.23584 0.076522 1 + 23743 16547 15609 15614 23540 23540 0.1710139632375558 KLRKLIIKKI 10 Unmodified _KLRKLIIKKI_ 0 0 0 REV__tr|U7SFR3|U7SFR3_FUSNUDiacylglyceryltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02327PE=4SV=1 REV__tr|U7SFR3|U7SFR3_FUSNUDiacylglyceryltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02327PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 626.6927490234375 2 626.9632 1251.91185 NaN NaN NaN NaN NaN NaN NaN 169.21 1 169.21 168.71 169.71 0 0 0 0 2.8426 1 34721 34721 0.013265 0.011884 1 + 23744 24855 15610 15615 23541 23541 0.2959682372641055 KLRKREKLLWY 11 Unmodified _KLRKREKLLWY_ 0 0 0 RAPGEF6|p.N386Ifs*20|1|0.21|ENSG00000158987|chr5:131504723-131504723|T/-|frameshift_variant RAPGEF6|p.N386Ifs*20|1|0.21|ENSG00000158987|chr5:131504723-131504723|T/-|frameshift_variant RAPGEF6|p.N386Ifs*20|1|0.21|ENSG00000158987|chr5:131504723-131504723|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 511.82806396484375 3 511.652311 1531.9351 0.22471 0.00011497 -1.0315 -0.00052776 -0.80677 -0.00041278 511.65053691776194 140.68 0.10567 135.81 135.74 135.84 -4.8677 4 2 2 0 0 0 0.96216 1 27126 27126 0.08335 0 1 1703000 23745 12863 15611 15616 23542 23542 0.19041217773087737 KLRLRAVRL 9 Unmodified _KLRLRAVRL_ 0 0 0 REV__ENST00000405737.2_2_13:41556342-41635296:-|nuORF REV__ENST00000405737.2_2_13:41556342-41635296:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 563.2789916992188 2 562.890567 1123.76658 0.33216 0.00018697 -3.8444 -0.002164 -3.5123 -0.001977 562.8876426067507 144.56 0.1758 139.61 139.48 139.66 -4.9445 6 4 2 0 0 0 0.64439 1 27905 27905 0.12781 0.0049496 1 2146400 + 23746 21384 15612 15617 23543 23543 0.2096478065006977 KLRPHLAKVLV 11 Unmodified _KLRPHLAKVLV_ 0 0 0 nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5;NSUN5|p.G89Afs*27|1|0.31|ENSG00000130305|chr7:73307708-73307708|C/-|frameshift_variant nc|ENSG00000130305|Q96P11|NSUN5 nc|ENSG00000130305|Q96P11|NSUN5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25067138671875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 87.168 1 83.439 82.939 83.939 -3.7289 0 0 0 0.22632 1 16675 16675 0.50596 0.50457 1 23747 3599 15613 15618 23544 23544 0.21390489652821998 KLRVRHKR 8 Unmodified _KLRVRHKR_ 0 0 0 REV__ENST00000314393.5_1_8:123965317-123965398:+|nuORF REV__ENST00000314393.5_1_8:123965317-123965398:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.2159118652344 3 364.912348 1091.71521 0.83166 0.00030348 1.1419 0.00041671 1.9736 0.00072019 364.9127467501551 26.495 0.44547 24.713 24.449 24.894 -1.7821 33 12 3 0 0 0 8448 1 4673 4673 6.3914 6.3914 1 2604600 + 23748 20509 15614 15619 23545 23545 0.17302456676020483 KLSDLQTQL 9 Unmodified _KLSDLQTQL_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.69287109375 2 523.298039 1044.58152 0.21094 0.00011038 0.056526 2.958E-05 0.26747 0.00013996 523.2980302078416 90.421 0.76948 86.643 86.293 87.062 -3.7779 37 21 2 0 0 0 0.19141 1 17304 17304 57.722 28.64 1 5209800 23749 2156 15615 15620 23546 23546 0.061017082691250835 KLSDLQTQL 9 Unmodified _KLSDLQTQL_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.298039 1044.58152 0.12332 6.4533E-05 0.63719 0.00033344 0.76051 0.00039797 523.2981866844367 86.833 0.76173 86.833 86.458 87.22 0 0.14368 0.00037597 NaN 96.367 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4751500 23750 2156 15615 15620 0.061017082691250835 KLSDLQTQL 9 Unmodified _KLSDLQTQL_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.298039 1044.58152 -0.25202 -0.00013188 0.27411 0.00014344 0.022081 1.1555E-05 523.2981610592657 90.449 0.81272 86.589 86.116 86.929 -3.8595 -0.099566 -4.0395E-06 NaN 96.367 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5358300 23751 2156 15615 15620 0.061017082691250835 KLSDLQTQL 9 Unmodified _KLSDLQTQL_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.298039 1044.58152 -0.2462 -0.00012883 0.25514 0.00013352 0.0089476 4.6823E-06 523.2981269679341 90.735 1.0136 86.691 85.953 86.967 -4.0443 0.0016623 -2.3885E-05 NaN 96.367 53 28 3 NaN NaN NaN NaN 0 NaN NaN 0 4567500 23752 2156 15615 15620 0.061017082691250835 KLSDNILKL 9 Unmodified _KLSDNILKL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;SYNE2|p.K1189Sfs*4|1|0.35|ENSG00000054654|chr14:64000642-64000642|A/-|frameshift_variant ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2612915039062 2 522.326599 1042.63865 0.042915 2.2416E-05 0.79893 0.0004173 0.84185 0.00043972 522.327249237143 120.72 0.39063 116.19 115.99 116.38 -4.5221 16 10 2 0 0 0 0.46796 1 23794 23794 21.59 0.053175 1 1583000 23753 1266 15616 15621 23547 23547 0.11903175545512568 KLSDNILKL 9 Unmodified _KLSDNILKL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;SYNE2|p.K1189Sfs*4|1|0.35|ENSG00000054654|chr14:64000642-64000642|A/-|frameshift_variant ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 522.326599 1042.63865 0.41181 0.0002151 -0.052703 -2.7528E-05 0.35911 0.00018757 522.326722515845 120.63 0.18054 116.16 116.02 116.2 -4.467 -0.015 -0.00026763 NaN 21.59 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 774130 23754 1266 15616 15621 0.11903175545512568 KLSELKETV 9 Unmodified _KLSELKETV_ 0 0 0 nc|ENSG00000167110|Q08379-2|GOLGA2;nc|ENSG00000167110|Q08379|GOLGA2;GOLGA2|p.Y989Lfs*4|1|0.29|ENSG00000167110|chr9:128257110-128257111|-/A|frameshift_variant;GOLGA2|p.Y989Tfs*9|1|0.35|ENSG00000167110|chr9:128257111-128257111|A/-|frameshift_variant;ENSG00000167110|ENST00000611957|GOLGA2 nc|ENSG00000167110|Q08379-2|GOLGA2 nc|ENSG00000167110|Q08379-2|GOLGA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6963500976562 2 523.808239 1045.60193 0.52289 0.00027389 -1.1766 -0.0006163 -0.65369 -0.00034241 523.8075266474821 46.497 0.35156 46.497 46.208 46.559 0 12 9 2 0 0 0 0.38759 1 8735 8735 17.113 8.9574 1 1269500 23755 5785 15617 15622 23548 23548 0.08094878928932303 KLSELKETV 9 Unmodified _KLSELKETV_ 0 0 0 nc|ENSG00000167110|Q08379-2|GOLGA2;nc|ENSG00000167110|Q08379|GOLGA2;GOLGA2|p.Y989Lfs*4|1|0.29|ENSG00000167110|chr9:128257110-128257111|-/A|frameshift_variant;GOLGA2|p.Y989Tfs*9|1|0.35|ENSG00000167110|chr9:128257111-128257111|A/-|frameshift_variant;ENSG00000167110|ENST00000611957|GOLGA2 nc|ENSG00000167110|Q08379-2|GOLGA2 nc|ENSG00000167110|Q08379-2|GOLGA2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.808239 1045.60193 -0.025926 -1.358E-05 -0.81443 -0.00042661 -0.84036 -0.00044019 523.8079748964456 49.23 0.34443 46.223 46.035 46.38 -3.0068 -0.13433 -6.6981E-07 NaN 17.113 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 666930 23756 5785 15617 15622 0.08094878928932303 KLSESVFR 8 Unmodified _KLSESVFR_ 0 0 0 HIP1R|p.N345Mfs*4|3|0.29|ENSG00000130787|chr12:122855584-122855584|C/-|frameshift_variant;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;ENST00000535831.5_1_12:123319379-123341792:+|nuORF;HIP1R|p.A781Pfs*24|1|0.19|ENSG00000130787|chr12:122859467-122859467|G/-|frameshift_variant;HIP1R|p.E1021Vfs*2|1|0.32|ENSG00000130787|chr12:122861412-122861445|AGAGGAGGTGGCCATCCGGCCCAGCACTGCCCCC/-|frameshift_variant;ENSG00000130787|ENST00000253083|HIP1R HIP1R|p.N345Mfs*4|3|0.29|ENSG00000130787|chr12:122855584-122855584|C/-|frameshift_variant HIP1R|p.N345Mfs*4|3|0.29|ENSG00000130787|chr12:122855584-122855584|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.18560791015625 3 322.51867 964.53418 -0.41913 -0.00013518 -0.32475 -0.00010474 -0.74388 -0.00023991 322.518617409482 50.601 0.46425 47.72 47.5 47.964 -2.8811 17 12 2 0 0 0 1.0252 1 9630 9630 6.2058 1.6769 1 765840 23757 3637 15618 15623 23549 23549 0.05049473788812975 KLSGKLYLV 9 Unmodified _KLSGKLYLV_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A;KIF5C|p.S816Vfs*68|1|0.35|ENSG00000168280|chr2:149005459-149005459|A/-|frameshift_variant ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 340.47979736328125 3 340.886582 1019.63792 0.22962 7.8274E-05 -0.33211 -0.00011321 -0.10249 -3.4936E-05 340.88639760996784 99.2 0.55635 94.931 94.644 95.201 -4.2692 26 15 2 0 0 0 0.27464 1 18963 18963 37.075 23.46 1 2288800 23758 6094 15619 15624 23550 23550 0.12888380896458784 KLSGKLYLV 9 Unmodified _KLSGKLYLV_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A;KIF5C|p.S816Vfs*68|1|0.35|ENSG00000168280|chr2:149005459-149005459|A/-|frameshift_variant ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.4879455566406 3 340.886582 1019.63792 -0.51977 -0.00017718 0.38014 0.00012959 -0.13963 -4.7597E-05 340.88665742994044 98.934 0.67439 94.977 94.631 95.305 -3.9564 33 19 2 0 0 0 0.27464 1 18995 18995 30.703 24.312 1 1462200 23759 6094 15619 15624 23551 23551 0.12888380896458784 KLSHRPQP 8 Unmodified _KLSHRPQP_ 0 0 0 ENSG00000070444|ENST00000174618|MNT ENSG00000070444|ENST00000174618|MNT ENSG00000070444|ENST00000174618|MNT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7806701660156 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 161.89 1 161.89 161.39 162.39 0 0 0 0 0.23312 1 32520 32520 6.2058 6.0829 1 23760 1431 15620 15625 23552 23552 0.06343715602793054 KLSLIRKFRL 10 Unmodified _KLSLIRKFRL_ 0 0 0 MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant;MYO15A|p.E2245Kfs*8|1|0.44|ENSG00000091536|chr17:18148533-18148533|G/-|frameshift_variant;ENSG00000091536|ENST00000647165|MYO15A;MYO15A|p.P958Lfs*28|1|0.35|ENSG00000091536|chr17:18121669-18121669|C/-|frameshift_variant MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.23699951171875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 47.136 1 47.136 46.636 47.636 0 0 0 0 0.22588 1 8884 8884 0.15932 0.01943 1 23761 1811 15621 15626 23553 23553 0.21390489652844735 KLSLVAAML 9 Oxidation (M) _KLSLVAAM(Oxidation (M))L_ KLSLVAAM(1)L KLSLVAAM(86)L 0 0 1 HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000044574|ENST00000324460|HSPA5 HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78424072265625 2 481.291171 960.567789 -0.0053118 -2.5565E-06 0.24867 0.00011968 0.24336 0.00011713 481.29117904183397 124.18 1.1578 124.18 123.67 124.83 0 76 32 3 0 0 0 0.02633 2 24524 24524;24577 85.642 30.868 1 12340000 23762 1209 15622 15627 23554;23555 23554 8 0.08592759236341863 KLSLVAAML 9 Oxidation (M) _KLSLVAAM(Oxidation (M))L_ KLSLVAAM(1)L KLSLVAAM(76)L 0 0 1 HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000044574|ENST00000324460|HSPA5 HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24444580078125 2 481.291171 960.567789 0.096113 4.6258E-05 0.021211 1.0209E-05 0.11732 5.6467E-05 481.291112746094 128.25 0.96298 123.62 123.05 124.01 -4.6292 62 26 3 0 0 0 0.039785 2 25276 25241;25276 75.761 28.064 1 6018500 23763 1209 15622 15627 23556;23557 23557 8 0.08592759236341863 KLSLVAAML 9 Oxidation (M) _KLSLVAAM(Oxidation (M))L_ KLSLVAAM(1)L KLSLVAAM(46)L 0 0 1 HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000044574|ENST00000324460|HSPA5 HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7724914550781 2 481.291171 960.567789 0.16697 8.0362E-05 -0.011539 -5.5536E-06 0.15543 7.4808E-05 481.2910541384955 128.55 0.88614 123.74 123.17 124.06 -4.817 41 24 2 0 0 0 0.13932 1 24720 24720 45.7 11.597 1 2576800 23764 1209 15622 15627 23558 23558 8 0.08592759236341863 KLSLVAAML 9 Oxidation (M) _KLSLVAAM(Oxidation (M))L_ KLSLVAAM(1)L KLSLVAAM(86)L 0 0 1 HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;ENSG00000044574|ENST00000324460|HSPA5 HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.255126953125 2 481.291171 960.567789 0.089874 4.3256E-05 0.088657 4.267E-05 0.17853 8.5925E-05 481.29114420666093 128.48 1.124 123.74 123.17 124.29 -4.7408 69 31 3 0 0 0 0.02633 3 24722 24708;24722;24751 85.642 34.786 1 4509300 23765 1209 15622 15627 23559;23560;23561 23560 8 0.08592759236341863 KLSMHDRSL 9 Unmodified _KLSMHDRSL_ 0 0 0 ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B ENSG00000166377|ENST00000426216|ATP9B ENSG00000166377|ENST00000426216|ATP9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7891235351562 2 543.789858 1085.56516 NaN NaN NaN NaN NaN NaN NaN 145.62 1 140.51 140.01 141.01 -5.1108 0 0 0 0.21844 1 28143 28143 18.146 1.9972 1 23766 5716 15623 15628 23562 23562 0.0258030383138248 KLSMHDRSL 9 Unmodified _KLSMHDRSL_ 0 0 0 ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B ENSG00000166377|ENST00000426216|ATP9B ENSG00000166377|ENST00000426216|ATP9B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7891845703125 2 543.789858 1085.56516 NaN NaN NaN NaN NaN NaN NaN 145.26 1 140.31 139.81 140.81 -4.9445 0 0 0 0.21844 1 28080 28080 18.146 4.2403 1 23767 5716 15623 15628 23563 23563 0.0258030383138248 KLSSKAVYL 9 Unmodified _KLSSKAVYL_ 0 0 0 ENST00000478117.5_1_1:16529010-16533481:-|nuORF;ENSG00000142632|ENST00000270747|ARHGEF19 ENST00000478117.5_1_1:16529010-16533481:-|nuORF ENST00000478117.5_1_1:16529010-16533481:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.2024230957031 3 336.874454 1007.60153 -0.28186 -9.495E-05 0.15288 5.1502E-05 -0.12897 -4.3448E-05 336.8744644383915 60.465 0.54832 57.532 57.204 57.752 -2.9333 26 15 2 0 0 0 0.069179 1 11639 11639 43.982 33.908 1 809780 23768 4435 15624 15629 23564 23564 0.0980350399973986 KLSSKAVYL 9 Unmodified _KLSSKAVYL_ 0 0 0 ENST00000478117.5_1_1:16529010-16533481:-|nuORF;ENSG00000142632|ENST00000270747|ARHGEF19 ENST00000478117.5_1_1:16529010-16533481:-|nuORF ENST00000478117.5_1_1:16529010-16533481:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 336.874454 1007.60153 -0.65896 -0.00022199 0.57044 0.00019217 -0.088513 -2.9818E-05 336.87472101399493 57.867 0.41804 57.867 57.614 58.032 0 0.26669 0.00038372 NaN 43.982 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 666070 23769 4435 15624 15629 0.0980350399973986 KLSSKAVYL 9 Unmodified _KLSSKAVYL_ 0 0 0 ENST00000478117.5_1_1:16529010-16533481:-|nuORF;ENSG00000142632|ENST00000270747|ARHGEF19 ENST00000478117.5_1_1:16529010-16533481:-|nuORF ENST00000478117.5_1_1:16529010-16533481:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 336.874454 1007.60153 0.093681 3.1559E-05 -0.35492 -0.00011956 -0.26124 -8.8004E-05 336.8743104015377 60.865 0.55499 57.495 57.065 57.62 -3.3694 -0.10497 -0.00055147 NaN 43.982 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 893570 23770 4435 15624 15629 0.0980350399973986 KLSSKAVYL 9 Unmodified _KLSSKAVYL_ 0 0 0 ENST00000478117.5_1_1:16529010-16533481:-|nuORF;ENSG00000142632|ENST00000270747|ARHGEF19 ENST00000478117.5_1_1:16529010-16533481:-|nuORF ENST00000478117.5_1_1:16529010-16533481:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 336.874454 1007.60153 -0.52369 -0.00017642 0.50653 0.00017064 -0.017157 -5.7799E-06 336.8746159871717 60.73 0.56308 57.506 57.171 57.734 -3.2237 -0.09371 0.00031913 NaN 43.982 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1762700 23771 4435 15624 15629 0.0980350399973986 KLTDYQVTL 9 Unmodified _KLTDYQVTL_ 0 0 0 KIF13A|p.K775Nfs*30|1|0.35|ENSG00000137177|chr6:17804490-17804490|T/-|frameshift_variant;KIF13A|p.V1116Sfs*4|2|0.23|ENSG00000137177|chr6:17787791-17787792|-/T|frameshift_variant;KIF13A|p.V1116Sfs*23|1|0.39|ENSG00000137177|chr6:17787792-17787792|T/-|frameshift_variant;nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A KIF13A|p.K775Nfs*30|1|0.35|ENSG00000137177|chr6:17804490-17804490|T/-|frameshift_variant KIF13A|p.K775Nfs*30|1|0.35|ENSG00000137177|chr6:17804490-17804490|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2648315429688 2 540.800414 1079.58628 0.36087 0.00019516 -0.53491 -0.00028928 -0.17404 -9.4119E-05 540.8001586009825 109.91 0.89272 109.91 109.47 110.37 0 40 25 2 0 0 0 0.12612 2 21665 21663;21665 47.594 7.7823 1 4297800 23772 4071 15625 15630 23565;23566 23566 0.04966592411892634 KLTELLFPY 9 Unmodified _KLTELLFPY_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20697021484375 3 375.218109 1122.6325 NaN NaN NaN NaN NaN NaN NaN 50.16 1 47.153 46.653 47.653 -3.0068 0 0 0 0.23508 1 9213 9213 7.609 0.97858 1 23773 3916 15626 15631 23567 23567 0.07608657313994627 KLTEMRGIYA 10 Unmodified _KLTEMRGIYA_ 0 0 0 ENST00000485049.1_1_20:49411653-49449308:+|nuORF;nc|ENSG00000124243|Q8TDM0-2|BCAS4;ENSG00000124243|ENST00000371608|BCAS4;nc|ENSG00000124243|Q8TDM0-3|BCAS4;nc|ENSG00000124243|Q8TDM0|BCAS4 ENST00000485049.1_1_20:49411653-49449308:+|nuORF ENST00000485049.1_1_20:49411653-49449308:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 394.84161376953125 3 394.549753 1180.62743 -0.28993 -0.00011439 -0.038982 -1.5381E-05 -0.32891 -0.00012977 394.54973769452295 74.009 0.61626 70.645 70.335 70.951 -3.3643 43 17 3 0 0 0 0.046341 1 14412 14412 44.392 39.495 1 2171000 23774 3306 15627 15632 23568 23568 0.044340301797547 KLTEMRGIYA 10 Unmodified _KLTEMRGIYA_ 0 0 0 ENST00000485049.1_1_20:49411653-49449308:+|nuORF;nc|ENSG00000124243|Q8TDM0-2|BCAS4;ENSG00000124243|ENST00000371608|BCAS4;nc|ENSG00000124243|Q8TDM0-3|BCAS4;nc|ENSG00000124243|Q8TDM0|BCAS4 ENST00000485049.1_1_20:49411653-49449308:+|nuORF ENST00000485049.1_1_20:49411653-49449308:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 394.549753 1180.62743 -0.22506 -8.8796E-05 -0.23927 -9.4404E-05 -0.46433 -0.0001832 394.54972548692785 74.284 0.6967 70.69 70.362 71.059 -3.594 0.025758 -8.2312E-05 NaN 44.392 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1869800 23775 3306 15627 15632 0.044340301797547 KLTEYVDKV 9 Unmodified _KLTEYVDKV_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7774047851562 2 547.808239 1093.60193 NaN NaN NaN NaN NaN NaN NaN 63.692 1 63.692 63.192 64.192 0 0 0 0 0.1222 1 12250 12250 34.222 18.073 1 23776 2571 15628 15633 23569 23569 0.05886878928936312 KLTEYVDKV 9 Unmodified _KLTEYVDKV_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7664794921875 2 547.808239 1093.60193 0.31333 0.00017164 0.034124 1.8693E-05 0.34745 0.00019034 547.8079564817501 67.146 0.43505 63.649 63.387 63.822 -3.4965 18 11 3 0 0 0 0.74911 1 12561 12561 19.626 8.1312 1 1512200 23777 2571 15628 15633 23570 23570 0.05886878928936312 KLTEYVDKV 9 Unmodified _KLTEYVDKV_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.78173828125 2 547.808239 1093.60193 0.39268 0.00021511 -0.23431 -0.00012836 0.15837 8.6757E-05 547.8080222379922 66.848 0.59242 63.521 63.237 63.83 -3.3268 21 16 2 0 0 0 0.4999 1 12630 12630 19.626 8.1312 1 1198300 23778 2571 15628 15633 23571 23571 0.05886878928936312 KLTGEVVAL 9 Unmodified _KLTGEVVAL_ 0 0 0 nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2 nc|ENSG00000123374|P24941-2|CDK2 nc|ENSG00000123374|P24941-2|CDK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2470703125 2 465.286943 928.559333 0.17941 8.3479E-05 -0.17178 -7.9926E-05 0.0076369 3.5534E-06 465.28680839157215 103.7 0.54961 99.357 99.001 99.551 -4.346 27 15 2 0 0 0 0.10537 1 19847 19847 47.987 41.399 1 2489600 23779 3264 15629 15634 23572 23572 0.09219528591370363 KLTGEVVAL 9 Unmodified _KLTGEVVAL_ 0 0 0 nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2 nc|ENSG00000123374|P24941-2|CDK2 nc|ENSG00000123374|P24941-2|CDK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2485656738281 2 465.286943 928.559333 0.62279 0.00028978 -0.72255 -0.0003362 -0.099765 -4.6419E-05 465.2865856775602 103.4 0.59455 99.349 99.031 99.626 -4.0543 35 16 3 0 0 0 0.10537 1 19886 19886 43.982 41.099 1 2246300 23780 3264 15629 15634 23573 23573 0.09219528591370363 KLTGIKHEL 9 Unmodified _KLTGIKHEL_ 0 0 0 ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 346.8403625488281 3 346.88172 1037.62333 0.18539 6.4308E-05 -0.21507 -7.4602E-05 -0.029678 -1.0295E-05 346.88155686694626 34.629 0.35219 32.376 32.254 32.606 -2.2527 19 9 3 0 0 0 0.45972 1 6117 6117 8.1555 3.2585 1 634270 23781 6237 15630 15635 23574 23574 0.10602308748320866 KLTGIKHEL 9 Unmodified _KLTGIKHEL_ 0 0 0 ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 346.88172 1037.62333 -0.3171 -0.00011 0.32032 0.00011111 0.0032169 1.1159E-06 346.88179278625773 32.502 0.45139 32.502 32.329 32.78 0 0.0669 3.6909E-06 NaN 8.1555 21 12 3 NaN NaN NaN NaN 0 NaN NaN 0 853630 23782 6237 15630 15635 0.10602308748320866 KLTGIKHEL 9 Unmodified _KLTGIKHEL_ 0 0 0 ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 346.88172 1037.62333 -0.4796 -0.00016636 0.67595 0.00023448 0.19636 6.8112E-05 346.8818586681203 34.785 0.41332 32.468 32.226 32.639 -2.3175 0.032409 0.00037378 NaN 8.1555 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 985540 23783 6237 15630 15635 0.10602308748320866 KLTGIKHEL 9 Unmodified _KLTGIKHEL_ 0 0 0 ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 346.88172 1037.62333 -0.33459 -0.00011606 0.48885 0.00016957 0.15426 5.351E-05 346.8817378956633 34.672 0.38792 32.395 32.203 32.591 -2.2766 -0.040146 0.00017907 NaN 8.1555 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 815920 23784 6237 15630 15635 0.10602308748320866 KLTKKIKKL 9 Unmodified _KLTKKIKKL_ 0 0 0 ENST00000445715.5_1_Y:21755293-21766003:+|nuORF ENST00000445715.5_1_Y:21755293-21766003:+|nuORF ENST00000445715.5_1_Y:21755293-21766003:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 367.1109313964844 3 367.269027 1098.78525 NaN NaN NaN NaN NaN NaN NaN 7.9738 1 7.9738 7.4738 8.4738 0 0 0 0 0.23508 1 784 784 0 0 1 23785 9934 15631 15636 23575 23575 0.23980897501269283 KLTKKIKKL 9 Unmodified _KLTKKIKKL_ 0 0 0 ENST00000445715.5_1_Y:21755293-21766003:+|nuORF ENST00000445715.5_1_Y:21755293-21766003:+|nuORF ENST00000445715.5_1_Y:21755293-21766003:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.1114196777344 3 367.269027 1098.78525 NaN NaN NaN NaN NaN NaN NaN 9.8519 1 8.7583 8.2583 9.2583 -1.0936 0 0 0 0.23508 1 1078 1078 0 0 1 23786 9934 15631 15636 23576 23576 0.23980897501269283 KLTKKIKKL 9 Unmodified _KLTKKIKKL_ 0 0 0 ENST00000445715.5_1_Y:21755293-21766003:+|nuORF ENST00000445715.5_1_Y:21755293-21766003:+|nuORF ENST00000445715.5_1_Y:21755293-21766003:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.1943359375 3 367.269027 1098.78525 NaN NaN NaN NaN NaN NaN NaN 20.098 1 18.463 17.963 18.963 -1.6351 0 0 0 0.19635 1 3074 3074 0.0033805 0 1 23787 9934 15631 15636 23577 23577 0.23980897501269283 KLTKKIKKL 9 Unmodified _KLTKKIKKL_ 0 0 0 ENST00000445715.5_1_Y:21755293-21766003:+|nuORF ENST00000445715.5_1_Y:21755293-21766003:+|nuORF ENST00000445715.5_1_Y:21755293-21766003:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.1735534667969 3 367.269027 1098.78525 NaN NaN NaN NaN NaN NaN NaN 45.899 1 43.032 42.532 43.532 -2.8666 0 0 0 0.19635 1 8340 8340 0.0033805 0 1 23788 9934 15631 15636 23578 23578 0.23980897501269283 KLTKVETRL 9 Unmodified _KLTKVETRL_ 0 0 0 nc|ENSG00000176714|Q6ZUS5-2|CCDC121 nc|ENSG00000176714|Q6ZUS5-2|CCDC121 nc|ENSG00000176714|Q6ZUS5-2|CCDC121 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7774047851562 2 544.345323 1086.67609 0.30712 0.00016718 -4.0062 -0.0021807 -3.6991 -0.0020136 544.3423937622998 147.55 0.20093 142.85 142.73 142.93 -4.7095 7 5 2 0 0 0 0.87634 1 29286 29286 1.4819 0 1 1773800 23789 12481 15632 15637 23579 23579 0.13622266811125883 KLTLPLLLIK 10 Unmodified _KLTLPLLLIK_ 0 0 0 REV__tr|U7T0Y6|U7T0Y6_FUSNUInnermembraneproteinoxaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00741PE=3SV=1 REV__tr|U7T0Y6|U7T0Y6_FUSNUInnermembraneproteinoxaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00741PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3336181640625 2 576.409935 1150.80532 0.3552 0.00020474 4.1297 0.0023804 4.4849 0.0025852 576.4144498526745 149.5 0.25468 144.38 144.25 144.5 -5.1204 8 6 2 0 0 0 1.1345 1 28992 28992 0.043787 0 1 1936500 + 23790 25284 15633 15638 23580 23580 0.23594648441235222 KLTWYLEKA 9 Unmodified _KLTWYLEKA_ 0 0 0 REV__SH2D4B|p.Q196H|1|0.2|ENSG00000178217|chr10:80588722-80588722|G/C|missense_variant REV__SH2D4B|p.Q196H|1|0.2|ENSG00000178217|chr10:80588722-80588722|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3289794921875 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 142.39 1 142.39 141.89 142.89 0 0 0 0 0.19669 1 28388 28388 1.2148 1.0428 1 + 23791 18595 15634 15639 23581 23581 0.06935175545504535 KLTWYLEKA 9 Unmodified _KLTWYLEKA_ 0 0 0 REV__SH2D4B|p.Q196H|1|0.2|ENSG00000178217|chr10:80588722-80588722|G/C|missense_variant REV__SH2D4B|p.Q196H|1|0.2|ENSG00000178217|chr10:80588722-80588722|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3289794921875 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 142.4 1 142.4 141.9 142.9 0 0 0 0 0.21469 1 28389 28389 19.257 7.0163 1 + 23792 18595 15634 15639 23582 23582 0.06935175545504535 KLTWYLEKA 9 Unmodified _KLTWYLEKA_ 0 0 0 REV__SH2D4B|p.Q196H|1|0.2|ENSG00000178217|chr10:80588722-80588722|G/C|missense_variant REV__SH2D4B|p.Q196H|1|0.2|ENSG00000178217|chr10:80588722-80588722|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3221435546875 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 147.67 1 142.52 142.02 143.02 -5.1557 0 0 0 0.22193 1 28578 28578 17.113 0.96379 1 + 23793 18595 15634 15639 23583 23583 0.06935175545504535 KLTYSRERA 9 Unmodified _KLTYSRERA_ 0 0 0 REV__ENST00000442428.1_1_9:13276577-13279048:-|nuORF REV__ENST00000442428.1_1_9:13276577-13279048:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21136474609375 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 23.124 1 21.336 20.836 21.836 -1.7886 0 0 0 0.23508 1 3706 3706 4.897 2.1618 1 + 23794 21718 15635 15640 23584 23584 0.05815335111856257 KLVGSHRLSIY 11 Unmodified _KLVGSHRLSIY_ 0 0 0 nc|ENSG00000156299|Q13009-2|TIAM1;ENSG00000156299|ENST00000541036|TIAM1 nc|ENSG00000156299|Q13009-2|TIAM1 nc|ENSG00000156299|Q13009-2|TIAM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2484436035156 3 424.918945 1271.73501 -0.80778 -0.00034324 -2.9082 -0.0012357 -3.7159 -0.001579 425.2521308361951 13.647 0.28401 12.637 12.448 12.732 -1.0098 15 7 3 0 0 0 0.81043 1 1978 1978 2.2527 0.16672 1 1115700 23795 5084 15636 15641 23585 23585 0.11000743105455513 KLVGSHRLSIY 11 Unmodified _KLVGSHRLSIY_ 0 0 0 nc|ENSG00000156299|Q13009-2|TIAM1;ENSG00000156299|ENST00000541036|TIAM1 nc|ENSG00000156299|Q13009-2|TIAM1 nc|ENSG00000156299|Q13009-2|TIAM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 424.918945 1271.73501 -1.883 -0.0008001 -4.274 -0.0018161 -6.1569 -0.0026162 425.2524014065359 13.647 0.13636 12.437 12.342 12.478 -1.2106 -0.1003 -0.0012296 NaN 2.2527 7 3 3 NaN NaN NaN NaN 0 NaN NaN 0 274050 23796 5084 15636 15641 0.11000743105455513 KLVHLKLDL 9 Unmodified _KLVHLKLDL_ 0 0 0 ENST00000361265.8_1_14:23441339-23442203:-|nuORF ENST00000361265.8_1_14:23441339-23442203:-|nuORF ENST00000361265.8_1_14:23441339-23442203:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.11151123046875 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 101.84 1 97.653 97.153 98.153 -4.1861 0 0 0 0.23508 1 20012 20012 2.4985 0 1 23797 9023 15637 15642 23586 23586 0.15527758679127146 KLVHLKLDL 9 Unmodified _KLVHLKLDL_ 0 0 0 ENST00000361265.8_1_14:23441339-23442203:-|nuORF ENST00000361265.8_1_14:23441339-23442203:-|nuORF ENST00000361265.8_1_14:23441339-23442203:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2018127441406 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 124.09 1 119.36 118.86 119.86 -4.731 0 0 0 0.23508 1 23830 23830 4.897 0 1 23798 9023 15637 15642 23587 23587 0.15527758679127146 KLVHLKLDL 9 Unmodified _KLVHLKLDL_ 0 0 0 ENST00000361265.8_1_14:23441339-23442203:-|nuORF ENST00000361265.8_1_14:23441339-23442203:-|nuORF ENST00000361265.8_1_14:23441339-23442203:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20147705078125 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 124.16 1 119.57 119.07 120.07 -4.5926 0 0 0 0.23508 1 23894 23894 2.4985 0 1 23799 9023 15637 15642 23588 23588 0.15527758679127146 KLVIVLDASL 10 Unmodified _KLVIVLDASL_ 0 0 0 REV__ENSG00000006071|ENST00000389817|ABCC8 REV__ENSG00000006071|ENST00000389817|ABCC8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5643005371094 3 357.565509 1069.6747 NaN NaN NaN NaN NaN NaN NaN 144.9 1 144.9 144.4 145.4 0 0 0 0 0.22588 1 28957 28957 3.3196 1.0369 1 + 23800 13868 15638 15643 23589 23589 0.14264632722347415 KLVKEVIAV 9 Unmodified _KLVKEVIAV_ 0 0 0 ENSG00000105379|ENST00000309244|ETFB;nc|ENSG00000105379|P38117-2|ETFB ENSG00000105379|ENST00000309244|ETFB ENSG00000105379|ENST00000309244|ETFB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.9997863769531 3 333.558466 997.653567 -0.25896 -8.6377E-05 0.35835 0.00011953 0.0994 3.3156E-05 333.558505000234 78.615 0.71181 75.152 74.818 75.53 -3.4633 44 19 3 0 0 0 0.87497 1 15336 15336 4.897 0 1 4462500 23801 2304 15639 15644 23590 23590 0.1546466741350514 KLVKFRKRR 9 Unmodified _KLVKFRKRR_ 0 0 0 REV__ENSG00000171956|ENST00000396057|FOXB1 REV__ENSG00000171956|ENST00000396057|FOXB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 615.9129638671875 2 615.917116 1229.81968 NaN NaN NaN NaN NaN NaN NaN 176.55 1 176.55 176.05 177.05 0 0 0 0 0.19626 1 36576 36576 0.0033805 0.0019993 1 + 23802 18264 15640 15645 23591 23591 0.21396158432708035 KLVKLVRLL 9 Unmodified _KLVKLVRLL_ 0 0 0 REV__ENST00000522600.1_1_8:23083357-23085674:+|nuORF REV__ENST00000522600.1_1_8:23083357-23085674:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2744750976562 2 541.394619 1080.77469 0.19006 0.0001029 0.01221 6.6107E-06 0.20227 0.00010951 541.8963464906005 150.24 0.17412 145.04 144.99 145.16 -5.1994 6 4 2 0 0 0 0.64208 1 29120 29120 0.40827 0 1 732860 + 23803 22428 15641 15646 23592 23592 0.23752914846841122 KLVKPLKKLLS 11 Unmodified _KLVKPLKKLLS_ 0 0 0 REV__ENST00000527982.1_1_11:251561-251621:+|nuORF REV__ENST00000527982.1_1_11:251561-251621:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 633.9214477539062 2 633.947216 1265.87988 NaN NaN NaN NaN NaN NaN NaN 173.86 1 173.86 173.36 174.36 0 0 0 0 0.23698 1 35970 35970 1.1933 0.84271 1 + 23804 22716 15642 15647 23593 23593 0.257574112526072 KLVKVNNVPHI 11 Unmodified _KLVKVNNVPHI_ 0 0 0 REV__ENST00000334003.11_1_7:76959552-77026708:-|nuORF REV__ENST00000334003.11_1_7:76959552-77026708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7635498046875 2 630.892972 1259.77139 NaN NaN NaN NaN NaN NaN NaN 118.05 1 113.55 113.05 114.05 -4.502 0 0 0 0.22632 1 23274 23274 0.50596 0 1 + 23805 19010 15643 15648 23594 23594 0.151896200021838 KLVPRMLKFL 10 Unmodified _KLVPRMLKFL_ 0 0 0 nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851|CASP10 nc|ENSG00000003400|Q92851-5|CASP10 nc|ENSG00000003400|Q92851-5|CASP10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7626953125 2 622.899211 1243.78387 NaN NaN NaN NaN NaN NaN NaN 173.93 1 173.93 173.43 174.43 0 0 0 0 2.8426 1 35987 35987 0.063865 0 1 23806 12203 15644 15649 23595 23595 0.1717294014088111 KLVTEDVL 8 Unmodified _KLVTEDVL_ 0 0 0 nc|ENSG00000203995|Q6WRX3-2|ZYG11A;ENSG00000203995|ENST00000371528|ZYG11A nc|ENSG00000203995|Q6WRX3-2|ZYG11A nc|ENSG00000203995|Q6WRX3-2|ZYG11A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23956298828125 2 458.771126 915.527698 0.23222 0.00010654 -0.013486 -6.187E-06 0.21873 0.00010035 458.771050690655 112.16 1.1397 112.16 111.69 112.83 0 95 32 4 0 0 0 0.23259 1 22072 22072 57.471 2.6978 1 58475000 23807 7552 15645 15650 23596 23596 0.06655535837421667 KLVVMKLF 8 Unmodified _KLVVMKLF_ 0 0 0 REV__tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1 REV__tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2527160644531 2 489.314449 976.614345 0.30353 0.00014852 -0.18581 -9.0917E-05 0.11772 5.7602E-05 489.3142420016513 161.01 0.88797 155.78 155.37 156.26 -5.2299 54 24 3 0 0 0 0.88282 1 31284 31284 0.69038 0 1 10607000 + 23808 24966 15646 15651 23597 23597 0.1251024385828714 KLVVMKLF 8 Unmodified _KLVVMKLF_ 0 0 0 REV__tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1 REV__tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.314449 976.614345 0.3003 0.00014694 -0.34375 -0.0001682 -0.043449 -2.126E-05 489.31423375557154 160.36 0.66899 155.56 155.26 155.93 -4.7952 -0.11183 -0.00014726 NaN 0.69038 34 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6815700 + 23809 24966 15646 15651 0.1251024385828714 KLVVMKLF 8 Unmodified _KLVVMKLF_ 0 0 0 REV__tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1 REV__tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.314449 976.614345 0.30353 0.00014852 -0.18581 -9.0917E-05 0.11772 5.7602E-05 489.3142420016513 161.01 0.88797 155.78 155.37 156.26 -5.2299 0.1025 7.317E-06 NaN 0.69038 54 24 3 NaN NaN NaN NaN 0 NaN NaN 0 10607000 + 23810 24966 15646 15651 0.1251024385828714 KLVVMKLF 8 Unmodified _KLVVMKLF_ 0 0 0 REV__tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1 REV__tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.314449 976.614345 0.20053 9.8124E-05 -0.035217 -1.7232E-05 0.16532 8.0891E-05 489.314333326307 160.93 0.91026 155.68 155.28 156.19 -5.2526 0.0093261 0.00015469 NaN 0.69038 58 25 3 NaN NaN NaN NaN 0 NaN NaN 0 17004000 + 23811 24966 15646 15651 0.1251024385828714 KLVVRLRQSRQ 11 Unmodified _KLVVRLRQSRQ_ 0 0 0 REV__ENST00000509842.5_3_3:141087607-141088725:+|nuORF REV__ENST00000509842.5_3_3:141087607-141088725:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5298767089844 3 461.628276 1381.863 NaN NaN NaN NaN NaN NaN NaN 28.083 1 28.083 27.583 28.583 0 0 0 0 0.22632 1 4975 4975 0.50596 0.36606 1 + 23812 22532 15647 15652 23598 23598 0.18734303419341813 KLWESPNVL 9 Unmodified _KLWESPNVL_ 0 0 0 ENST00000471809.5_1_22:37159849-37172159:-|nuORF;nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27 ENST00000471809.5_1_22:37159849-37172159:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7788696289062 2 543.303124 1084.5917 0.33325 0.00018105 -0.084298 -4.5799E-05 0.24895 0.00013525 543.3029297112075 127.34 0.76407 127.34 126.92 127.68 0 50 21 3 0 0 0 0.057505 2 25178 25067;25178 68.081 22.06 1 8340200 23813 10216 15648 15653 23599;23600 23600 0.05278315994382865 KLWESPNVL 9 Unmodified _KLWESPNVL_ 0 0 0 ENST00000471809.5_1_22:37159849-37172159:-|nuORF;nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27 ENST00000471809.5_1_22:37159849-37172159:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.787841796875 2 543.303124 1084.5917 0.055231 3.0007E-05 0.16113 8.7542E-05 0.21636 0.00011755 543.3031443445169 132.09 0.79726 127.24 126.87 127.67 -4.8527 61 22 3 0 0 0 0.012534 2 25362 25362;25400 99.755 54.271 1 13359000 23814 10216 15648 15653 23601;23602 23601 0.05278315994382865 KLWESPNVL 9 Unmodified _KLWESPNVL_ 0 0 0 ENST00000471809.5_1_22:37159849-37172159:-|nuORF;nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27 ENST00000471809.5_1_22:37159849-37172159:-|nuORF ENST00000471809.5_1_22:37159849-37172159:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7943725585938 2 543.303124 1084.5917 0.27596 0.00014993 -0.28471 -0.00015468 -0.0087496 -4.7537E-06 543.3029079396642 132.09 0.96161 127.29 126.87 127.83 -4.799 65 27 3 0 0 0 0.0071415 2 25452 25452;25461 110.67 62.329 1 12736000 23815 10216 15648 15653 23603;23604 23603 0.05278315994382865 KLWGGRFVGA 10 Unmodified _KLWGGRFVGA_ 0 0 0 ENST00000496336.1_1_7:65540843-65547929:+|nuORF;ENST00000487982.5_1_7:65541068-65551857:+|nuORF;nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL ENST00000496336.1_1_7:65540843-65547929:+|nuORF ENST00000496336.1_1_7:65540843-65547929:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 364.4872741699219 3 364.210059 1089.60835 0.16227 5.9099E-05 0.61228 0.000223 0.77455 0.0002821 364.2104710072518 97.669 0.47887 93.435 93.018 93.497 -4.2348 22 13 2 0 0 0 1.1313 1 18591 18591 1.9064 0 1 1069600 23816 3434 15649 15654 23605 23605 0.06712861670985149 KLWIKDFE 8 Unmodified _KLWIKDFE_ 0 0 0 REV__tr|U7SEZ5|U7SEZ5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02316PE=4SV=1 REV__tr|U7SEZ5|U7SEZ5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02316PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20172119140625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 90.064 1 86.204 85.704 86.704 -3.8595 0 0 0 0.21486 1 17620 17620 1.6526 0 1 + 23817 24847 15650 15655 23606 23606 0.05019217482708882 KLWRTMPWYI 10 Unmodified _KLWRTMPWYI_ 0 0 0 REV__nc|ENSG00000112305|Q8IYB5-3|SMAP1 REV__nc|ENSG00000112305|Q8IYB5-3|SMAP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25213623046875 3 465.253159 1392.73765 NaN NaN NaN NaN NaN NaN NaN 135.25 1 130.61 130.11 131.11 -4.6399 0 0 0 2.8426 1 26677 26677 0.51642 0.34442 1 + 23818 24001 15651 15656 23607 23607 0.05698875238772416 KLWTGGLDNTV 11 Unmodified _KLWTGGLDNTV_ 0 0 0 ENSG00000196781|ENST00000376499|TLE1;ENST00000462803.5_1_9:82286241-82340056:+|nuORF;nc|ENSG00000106829|Q04727-2|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-3|TLE4 ENSG00000196781|ENST00000376499|TLE1 ENSG00000196781|ENST00000376499|TLE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.275390625 2 602.322045 1202.62954 1.3118 0.00079013 -0.67547 -0.00040685 0.63634 0.00038328 602.3213765370342 119.11 0.46172 114.61 114.39 114.86 -4.502 20 12 2 0 0 0 0.20756 1 23474 23474 57.108 30.839 1 2043300 23819 7308 15652 15657 23608 23608 0.036327821891973144 KLWTGGLDNTV 11 Unmodified _KLWTGGLDNTV_ 0 0 0 ENSG00000196781|ENST00000376499|TLE1;ENST00000462803.5_1_9:82286241-82340056:+|nuORF;nc|ENSG00000106829|Q04727-2|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-3|TLE4 ENSG00000196781|ENST00000376499|TLE1 ENSG00000196781|ENST00000376499|TLE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3014526367188 2 602.322045 1202.62954 0.87799 0.00052883 -0.046971 -2.8291E-05 0.83102 0.00050054 602.3218834122771 119.29 0.52309 114.64 114.28 114.81 -4.645 17 14 2 0 0 0 0.25489 1 22877 22877 53.317 20.531 1 1564600 23820 7308 15652 15657 23609 23609 0.036327821891973144 KLWTGGLDNTV 11 Unmodified _KLWTGGLDNTV_ 0 0 0 ENSG00000196781|ENST00000376499|TLE1;ENST00000462803.5_1_9:82286241-82340056:+|nuORF;nc|ENSG00000106829|Q04727-2|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-3|TLE4 ENSG00000196781|ENST00000376499|TLE1 ENSG00000196781|ENST00000376499|TLE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2758178710938 2 602.322045 1202.62954 0.48441 0.00029177 -1.013 -0.00061013 -0.52854 -0.00031835 602.3215567598758 118.96 0.48912 114.55 114.45 114.94 -4.4088 18 13 2 0 0 0 0.49951 1 22900 22900 42.835 22.421 1 1563100 23821 7308 15652 15657 23610 23610 0.036327821891973144 KLYCFYSENTD 11 Unmodified _KLYCFYSENTD_ 0 0 0 NTN4|p.E59K|1|0.37|ENSG00000074527|chr12:95787349-95787349|C/T|missense_variant NTN4|p.E59K|1|0.37|ENSG00000074527|chr12:95787349-95787349|C/T|missense_variant NTN4|p.E59K|1|0.37|ENSG00000074527|chr12:95787349-95787349|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5352478027344 3 461.535949 1381.58602 NaN NaN NaN NaN NaN NaN NaN 17.708 1 16.397 15.897 16.897 -1.3109 0 0 0 0.22632 1 2849 2849 0.50596 0.41111 1 23822 12713 15653 15658 23611 23611 -0.08951195370264031 KLYEMEILAA 10 Unmodified _KLYEMEILAA_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.26025390625 2 590.81775 1179.62095 0.58371 0.00034487 0.084685 5.0034E-05 0.6684 0.0003949 591.3191210459003 148.45 0.64191 143.74 143.44 144.08 -4.7095 31 17 2 0 0 0 1.0699 1 29503 29503 34.967 33.225 1 5766000 23823 1659 15654 15659 23612 23612 0.03832092228390138 KLYEMEILAA 10 Unmodified _KLYEMEILAA_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.26611328125 2 590.81775 1179.62095 0.53694 0.00031723 -0.53863 -0.00031823 -0.001686 -9.9613E-07 590.8173737133528 148.9 0.6566 143.74 143.47 144.12 -5.1558 31 18 2 0 0 0 0.77164 1 28839 28839 30.703 12.557 1 4308300 23824 1659 15654 15659 23613 23613 0.03832092228390138 KLYGKPIRV 9 Unmodified _KLYGKPIRV_ 0 0 0 SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant;ENSG00000143368|ENST00000271628|SF3B4 SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 359.9018859863281 3 358.565843 1072.6757 -0.092179 -3.3052E-05 0.0099218 3.5576E-06 -0.082257 -2.9495E-05 358.5658031755995 40.299 1.0611 40.299 39.859 40.92 0 81 29 5 0 0 0 0.60489 1 7493 7493 2.732 0.10077 1 53411000 23825 4477 15655 15660 23614 23614 0.14226891881935444 KLYGKPIRV 9 Unmodified _KLYGKPIRV_ 0 0 0 SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant;ENSG00000143368|ENST00000271628|SF3B4 SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 358.565843 1072.6757 -0.38019 -0.00013632 0.32391 0.00011614 -0.056272 -2.0177E-05 358.5659073416705 42.897 0.86226 40.178 39.768 40.63 -2.7191 -0.032072 9.0347E-05 NaN 2.732 72 23 5 NaN NaN NaN NaN 0 NaN NaN 0 45858000 23826 4477 15655 15660 0.14226891881935444 KLYGKPIRV 9 Unmodified _KLYGKPIRV_ 0 0 0 SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant;ENSG00000143368|ENST00000271628|SF3B4 SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 358.565843 1072.6757 -0.048714 -1.7467E-05 -0.11005 -3.9461E-05 -0.15877 -5.6928E-05 358.56576759376065 42.861 0.98965 40.21 39.811 40.8 -2.651 -9.46E-05 -0.00037647 NaN 2.732 85 27 5 NaN NaN NaN NaN 0 NaN NaN 0 43764000 23827 4477 15655 15660 0.14226891881935444 KLYGKPIRV 9 Unmodified _KLYGKPIRV_ 0 0 0 SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant;ENSG00000143368|ENST00000271628|SF3B4 SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 358.565843 1072.6757 -0.69707 -0.00024994 0.56829 0.00020377 -0.12877 -4.6174E-05 358.5660192484336 42.759 0.94816 40.153 39.75 40.699 -2.606 -0.056761 0.00035323 NaN 2.732 84 26 4 NaN NaN NaN NaN 0 NaN NaN 0 34058000 23828 4477 15655 15660 0.14226891881935444 KLYLKKLLKL 10 Unmodified _KLYLKKLLKL_ 0 0 0 REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.743896484375 2 630.444309 1258.87407 NaN NaN NaN NaN NaN NaN NaN 174.98 1 170.19 169.69 170.69 -4.7898 0 0 0 2.8426 1 35765 35765 0.13989 0.04505 1 + 23829 23306 15656 15661 23615 23615 0.25498312740933216 KLYSDEITP 9 Unmodified _KLYSDEITP_ 0 0 0 REV__ENSG00000158186|ENST00000423968|MRAS REV__ENSG00000158186|ENST00000423968|MRAS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2830810546875 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 56.741 1 53.551 53.051 54.051 -3.1895 0 0 0 0.22962 1 10522 10522 14.838 3.198 1 + 23830 17327 15657 15662 23616 23616 0.009303131409069465 KLYSLLLKRLK 11 Unmodified _KLYSLLLKRLK_ 0 0 0 REV__FASTKD1|p.E401K|1|0.16|ENSG00000138399|chr2:169555137-169555137|C/T|missense_variant REV__FASTKD1|p.E401K|1|0.16|ENSG00000138399|chr2:169555137-169555137|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 687.9645385742188 2 687.963397 1373.91224 NaN NaN NaN NaN NaN NaN NaN 174.78 1 174.78 174.28 175.28 0 0 0 0 0.23698 1 36193 36193 2.4985 2.1479 1 + 23831 23524 15658 15663 23617 23617 0.24024198655592954 KLYTGLREV 9 Unmodified _KLYTGLREV_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21368408203125 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 65.661 1 65.661 65.161 66.161 0 0 0 0 0.13176 1 12667 12667 32.898 17.159 1 23832 1171 15659 15664 23618 23618 0.0825400488570267 KLYTGLREV 9 Unmodified _KLYTGLREV_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21337890625 3 360.213358 1077.61824 -0.32894 -0.00011849 0.15278 5.5035E-05 -0.17616 -6.3453E-05 360.21342846174826 68.591 0.1767 65.411 65.341 65.518 -3.1796 6 4 2 0 0 0 0.5835 2 13332 13332;13341 14.218 5.9097 1 1775200 23833 1171 15659 15664 23619;23620 23619 0.0825400488570267 KLYTGLREV 9 Unmodified _KLYTGLREV_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2133483886719 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 69.081 1 65.545 65.045 66.045 -3.5362 0 0 0 0.23508 1 13000 13000 7.4771 1.6936 1 23834 1171 15659 15664 23621 23621 0.0825400488570267 KLYVELQG 8 Unmodified _KLYVELQG_ 0 0 0 REV__ENSG00000110448|ENST00000347785|CD5 REV__ENSG00000110448|ENST00000347785|CD5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1844482421875 3 317.183287 948.528032 NaN NaN NaN NaN NaN NaN NaN 169.45 1 164.58 164.08 165.08 -4.873 0 0 0 0.21486 1 33468 33468 1.4819 0 1 + 23835 15204 15660 15665 23622 23622 0.05170955557287016 KLYYDKEQ 8 Unmodified _KLYYDKEQ_ 0 0 0 ENSG00000167434|ENST00000300900|CA4 ENSG00000167434|ENST00000300900|CA4 ENSG00000167434|ENST00000300900|CA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7749633789062 2 543.776939 1085.53933 0.32572 0.00017712 -1.8584 -0.0010106 -1.5327 -0.00083345 543.7761427732092 71.708 0.74193 68.08 67.847 68.589 -3.6275 49 20 3 0 0 0 0.66247 1 13496 13496 18.146 0 1 3646900 23836 5808 15661 15666 23623 23623 -2.2671392343909247E-05 KMAEEKLTHKM 11 Oxidation (M) _KMAEEKLTHKM(Oxidation (M))_ KMAEEKLTHKM(1) KM(-40)AEEKLTHKM(40) 0 0 1 ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1 ENST00000465604.1_1_1:26227509-26228203:-|nuORF ENST00000465604.1_1_1:26227509-26228203:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 454.2307434082031 3 454.568707 1360.68429 -0.66584 -0.00030267 -1.5768 -0.00071677 -2.2427 -0.0010194 454.90136967512495 14.65 1.1052 13.477 13.21 14.315 -1.173 39 31 2 0 0 0 0.021748 1 1995 1995 40.239 34.836 2 1244600 23837 2995 15662 15667 23624 23624 40 0.018377096738959153 KMAEEKLTHKM 11 Oxidation (M) _KMAEEKLTHKM(Oxidation (M))_ 0 0 1 ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1 ENST00000465604.1_1_1:26227509-26228203:-|nuORF ENST00000465604.1_1_1:26227509-26228203:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 454.568707 1360.68429 -1.6412 -0.00074602 -1.5061 -0.00068462 -3.1472 -0.0014306 454.90172510886117 14.62 0.50305 13.41 13.246 13.749 -1.2106 -0.033671 4.5322E-05 NaN 40.239 28 14 4 NaN NaN NaN NaN 0 NaN NaN 0 1326400 23838 2995 15662 15667 40 0.018377096738959153 KMAEMLVEL 9 Oxidation (M) _KM(Oxidation (M))AEMLVEL_ KM(0.921)AEM(0.079)LVEL KM(11)AEM(-11)LVEL 0 0 1 ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000179010|ENST00000382581|MRFAP1 ENSG00000179010|ENST00000382581|MRFAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2769775390625 2 540.277403 1078.54025 0.27882 0.00015064 -0.59023 -0.00031889 -0.31141 -0.00016825 540.2771744348566 127.23 0.93465 127.23 126.78 127.72 0 59 26 3 0 0 0 0.16539 2 25114 25104;25114 41.956 11.158 2 14432000 23839 6602 15663 15668 23625;23626 23626 94 0.0041248791380894545 KMAEMLVEL 9 Oxidation (M) _KM(Oxidation (M))AEMLVEL_ KM(0.989)AEM(0.011)LVEL KM(20)AEM(-20)LVEL 0 0 1 ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000179010|ENST00000382581|MRFAP1 ENSG00000179010|ENST00000382581|MRFAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27587890625 2 540.277403 1078.54025 0.26467 0.00014299 -0.027963 -1.5108E-05 0.2367 0.00012789 540.2774411713946 131.5 1.0238 126.72 126.22 127.24 -4.7725 67 28 3 0 0 0 0.082353 1 25267 25267 42.232 39.601 2 10315000 23840 6602 15663 15668 23627 23627 94 0.0041248791380894545 KMAEMLVEL 9 Oxidation (M) _KM(Oxidation (M))AEMLVEL_ 0 0 1 ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000179010|ENST00000382581|MRFAP1 ENSG00000179010|ENST00000382581|MRFAP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.277403 1078.54025 0.17266 9.3282E-05 -0.040522 -2.1893E-05 0.13213 7.1389E-05 540.2775409697206 131.29 1.067 126.66 126.1 127.17 -4.6359 -0.015858 -3.9996E-05 NaN 42.232 72 29 3 NaN NaN NaN NaN 0 NaN NaN 0 10509000 23841 6602 15663 15668 94 0.0041248791380894545 KMAEMLVEL 9 Oxidation (M) _KM(Oxidation (M))AEMLVEL_ 0 0 1 ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000179010|ENST00000382581|MRFAP1 ENSG00000179010|ENST00000382581|MRFAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.277403 1078.54025 0.14833 8.0142E-05 5.0866 0.0027482 5.2349 0.0028283 540.2797208227788 132.4 0.21007 127.55 127.46 127.67 -4.8527 0.15756 0.0060428 NaN 41.956 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1567000 23842 6602 15663 15668 94 0.0041248791380894545 KMAEMLVEL 9 Oxidation (M) _KM(Oxidation (M))AEMLVEL_ 0 0 1 ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000179010|ENST00000382581|MRFAP1 ENSG00000179010|ENST00000382581|MRFAP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.277403 1078.54025 0.13787 7.4487E-05 0.056575 3.0566E-05 0.19444 0.00010505 540.2774428352152 131.49 1.1323 126.64 126.08 127.21 -4.8527 -0.033801 6.4923E-05 NaN 42.232 66 32 3 NaN NaN NaN NaN 0 NaN NaN 0 7346300 23843 6602 15663 15668 94 0.0041248791380894545 KMAEMLVEL 9 Unmodified _KMAEMLVEL_ 0 0 0 ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000179010|ENST00000382581|MRFAP1 ENSG00000179010|ENST00000382581|MRFAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2610473632812 2 532.279946 1062.54534 0.094046 5.0059E-05 -0.52689 -0.00028045 -0.43284 -0.00023039 532.2798259317927 149.03 0.54987 149.03 148.79 149.34 0 48 15 4 0 0 0 0.031786 2 29856 29822;29856 79.596 35.738 1 15550000 23844 6602 15663 15669 23628;23629 23629 0.016567917764405138 KMAGIGIREA 10 Unmodified _KMAGIGIREA_ 0 0 0 CON__P19012 CON__P19012 CON__P19012 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6776733398438 2 523.294776 1044.575 -0.0036729 -1.922E-06 -0.39541 -0.00020692 -0.39908 -0.00020884 523.2946192672482 52.155 0.44312 49.103 48.87 49.313 -3.0517 18 12 2 0 0 0 0.84924 1 9611 9611 15.739 4.9391 1 1279500 + 23845 667 15664 15670 23630 23630 0.05449491836770903 KMAGIGIREA 10 Unmodified _KMAGIGIREA_ 0 0 0 CON__P19012 CON__P19012 CON__P19012 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.294776 1044.575 -0.54798 -0.00028675 0.15374 8.0452E-05 -0.39423 -0.0002063 523.294833100619 52.237 0.42118 49.149 48.845 49.266 -3.0876 -0.016428 0.00059526 NaN 15.739 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1524000 + 23846 667 15664 15670 0.05449491836770903 KMANSVTDL 9 Unmodified _KMANSVTDL_ 0 0 0 nc|ENSG00000135040|Q5VZE5-2|NAA35;NAA35|p.P310Lfs*9|1|0.07|ENSG00000135040|chr9:85996449-85996452|CCAC/-|frameshift_variant;NAA35|p.T563Qfs*10|1|0.26|ENSG00000135040|chr9:86016651-86016651|A/-|frameshift_variant;NAA35|p.T563Nfs*29|1|0.26|ENSG00000135040|chr9:86016650-86016651|-/A|frameshift_variant;ENSG00000135040|ENST00000361671|NAA35 nc|ENSG00000135040|Q5VZE5-2|NAA35 nc|ENSG00000135040|Q5VZE5-2|NAA35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2524108886719 2 489.749867 977.485181 -0.11511 -5.6376E-05 0.091622 4.4872E-05 -0.023489 -1.1504E-05 489.74987432052336 59.699 0.70809 59.699 59.321 60.029 0 26 19 2 0 0 0 0.09885 2 11448 11448;11459 56.177 3.9087 1 1760900 23847 3892 15665 15671 23631;23632 23631 -0.004461825624616722 KMANSVTDL 9 Unmodified _KMANSVTDL_ 0 0 0 nc|ENSG00000135040|Q5VZE5-2|NAA35;NAA35|p.P310Lfs*9|1|0.07|ENSG00000135040|chr9:85996449-85996452|CCAC/-|frameshift_variant;NAA35|p.T563Qfs*10|1|0.26|ENSG00000135040|chr9:86016651-86016651|A/-|frameshift_variant;NAA35|p.T563Nfs*29|1|0.26|ENSG00000135040|chr9:86016650-86016651|-/A|frameshift_variant;ENSG00000135040|ENST00000361671|NAA35 nc|ENSG00000135040|Q5VZE5-2|NAA35 nc|ENSG00000135040|Q5VZE5-2|NAA35 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2588806152344 2 489.749867 977.485181 -0.01655 -8.1053E-06 -0.29835 -0.00014612 -0.3149 -0.00015422 489.7499122793744 62.697 0.6555 59.458 59.139 59.795 -3.2395 26 18 2 0 0 0 0.014798 1 11757 11757 123.45 23.079 1 2245600 23848 3892 15665 15671 23633 23633 -0.004461825624616722 KMAPALRKV 9 Unmodified _KMAPALRKV_ 0 0 0 ENST00000538662.5_1_19:1383907-1391085:+|nuORF;ENST00000436115.6_1_19:1390815-1393403:+|nuORF;ENST00000543289.5_1_19:1388688-1391085:+|nuORF;nc|ENSG00000115286|O75251-2|NDUFS7;ENST00000545446.5_1_19:1388688-1393403:+|nuORF;ENSG00000115286|ENST00000233627|NDUFS7;ENST00000538523.5_1_19:1387763-1393403:+|nuORF;DAZAP1-NDUFS7|1|fusion ENST00000538662.5_1_19:1383907-1391085:+|nuORF ENST00000538662.5_1_19:1383907-1391085:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.2071838378906 3 338.547795 1012.62156 0.23478 7.9483E-05 0.43172 0.00014616 0.66649 0.00022564 338.5478518764282 27.8 0.48981 26.044 25.757 26.247 -1.7552 31 13 3 0 0 0 0.25976 1 4643 4643 22.109 21.427 1 3191000 23849 11051 15666 15672 23634 23634 0.11574976458712172 KMAPALRKV 9 Unmodified _KMAPALRKV_ 0 0 0 ENST00000538662.5_1_19:1383907-1391085:+|nuORF;ENST00000436115.6_1_19:1390815-1393403:+|nuORF;ENST00000543289.5_1_19:1388688-1391085:+|nuORF;nc|ENSG00000115286|O75251-2|NDUFS7;ENST00000545446.5_1_19:1388688-1393403:+|nuORF;ENSG00000115286|ENST00000233627|NDUFS7;ENST00000538523.5_1_19:1387763-1393403:+|nuORF;DAZAP1-NDUFS7|1|fusion ENST00000538662.5_1_19:1383907-1391085:+|nuORF ENST00000538662.5_1_19:1383907-1391085:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 338.8751220703125 3 338.547795 1012.62156 -0.43516 -0.00014732 0.89273 0.00030223 0.45757 0.00015491 338.54808805172286 27.922 0.45192 25.926 25.717 26.169 -1.9962 25 12 3 0 0 0 0.15889 1 4722 4722 22.736 21.281 1 2131000 23850 11051 15666 15672 23635 23635 0.11574976458712172 KMAPALRKV 9 Unmodified _KMAPALRKV_ 0 0 0 ENST00000538662.5_1_19:1383907-1391085:+|nuORF;ENST00000436115.6_1_19:1390815-1393403:+|nuORF;ENST00000543289.5_1_19:1388688-1391085:+|nuORF;nc|ENSG00000115286|O75251-2|NDUFS7;ENST00000545446.5_1_19:1388688-1393403:+|nuORF;ENSG00000115286|ENST00000233627|NDUFS7;ENST00000538523.5_1_19:1387763-1393403:+|nuORF;DAZAP1-NDUFS7|1|fusion ENST00000538662.5_1_19:1383907-1391085:+|nuORF ENST00000538662.5_1_19:1383907-1391085:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 338.547795 1012.62156 -0.32151 -0.00010885 0.61893 0.00020954 0.29742 0.00010069 338.54796124145184 26.093 0.34497 26.093 25.914 26.259 0 0.090116 0.00017723 NaN 22.736 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1708200 23851 11051 15666 15672 0.11574976458712172 KMAPALRKV 9 Unmodified _KMAPALRKV_ 0 0 0 ENST00000538662.5_1_19:1383907-1391085:+|nuORF;ENST00000436115.6_1_19:1390815-1393403:+|nuORF;ENST00000543289.5_1_19:1388688-1391085:+|nuORF;nc|ENSG00000115286|O75251-2|NDUFS7;ENST00000545446.5_1_19:1388688-1393403:+|nuORF;ENSG00000115286|ENST00000233627|NDUFS7;ENST00000538523.5_1_19:1387763-1393403:+|nuORF;DAZAP1-NDUFS7|1|fusion ENST00000538662.5_1_19:1383907-1391085:+|nuORF ENST00000538662.5_1_19:1383907-1391085:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 338.547795 1012.62156 0.58221 0.00019711 -0.047412 -1.6051E-05 0.5348 0.00018106 338.54774394853285 27.903 0.42355 25.947 25.735 26.158 -1.9561 -0.05536 -0.00049954 NaN 22.736 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2345100 23852 11051 15666 15672 0.11574976458712172 KMDDLNLHY 9 Unmodified _KMDDLNLHY_ 0 0 0 ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3 ENST00000550564.1_1_12:53468877-53473168:-|nuORF ENST00000550564.1_1_12:53468877-53473168:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3314208984375 2 574.773874 1147.53319 0.2689 0.00015456 -0.75422 -0.0004335 -0.48532 -0.00027895 574.7737205940284 85.93 0.77727 85.93 85.539 86.317 0 80 21 6 0 0 0 0.15889 1 16779 16779 47.987 27.867 1 29971000 23853 5849 15667 15673 23636 23636 -0.03467108642416861 KMDDLNLHY 9 Unmodified _KMDDLNLHY_ 0 0 0 ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3 ENST00000550564.1_1_12:53468877-53473168:-|nuORF ENST00000550564.1_1_12:53468877-53473168:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3130493164062 2 574.773874 1147.53319 -0.10902 -6.2662E-05 -0.06902 -3.9671E-05 -0.17804 -0.00010233 574.7739638724192 89.73 0.85564 85.87 85.406 86.262 -3.8595 66 23 4 0 0 0 0.41266 2 17548 17548;17575 24.991 6.8446 1 26044000 23854 5849 15667 15673 23637;23638 23637 -0.03467108642416861 KMDDLNLHY 9 Unmodified _KMDDLNLHY_ 0 0 0 ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3 ENST00000550564.1_1_12:53468877-53473168:-|nuORF ENST00000550564.1_1_12:53468877-53473168:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3350219726562 2 574.773874 1147.53319 0.45144 0.00025948 -0.50651 -0.00029113 -0.055072 -3.1654E-05 574.773661537434 89.873 0.74743 85.829 85.452 86.2 -4.0443 68 20 4 0 0 0 0.55979 1 17088 17088 15.847 7.2539 1 30466000 23855 5849 15667 15673 23639 23639 -0.03467108642416861 KMDDLNLHY 9 Unmodified _KMDDLNLHY_ 0 0 0 ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3 ENST00000550564.1_1_12:53468877-53473168:-|nuORF ENST00000550564.1_1_12:53468877-53473168:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3283081054688 2 574.773874 1147.53319 0.19856 0.00011413 -0.26074 -0.00014987 -0.062181 -3.574E-05 574.773820926522 89.545 0.94547 85.767 85.347 86.293 -3.7779 73 26 4 0 0 0 0.15889 1 17154 17154 29.419 9.2992 1 19680000 23856 5849 15667 15673 23640 23640 -0.03467108642416861 KMDDPDYWRTV 11 Oxidation (M) _KM(Oxidation (M))DDPDYWRTV_ KM(1)DDPDYWRTV KM(44)DDPDYWRTV 0 0 1 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.235107421875 3 481.218731 1440.63436 -0.004877 -2.3469E-06 0.18924 9.1064E-05 0.18436 8.8717E-05 481.2187266387464 85.476 0.81496 81.812 81.365 82.18 -3.6641 60 22 4 0 0 0 0.42353 1 16719 16719 43.713 39.867 1 4298300 23857 7959 15668 15674 23641 23641 106 -0.06832701730400004 KMDDPDYWRTV 11 Oxidation (M) _KM(Oxidation (M))DDPDYWRTV_ KM(1)DDPDYWRTV KM(50)DDPDYWRTV 0 0 1 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2539367675781 3 481.218731 1440.63436 0.25442 0.00012243 0.10979 5.2834E-05 0.36422 0.00017527 481.2186727256367 85.603 0.76331 81.653 81.248 82.012 -3.9503 46 21 3 0 0 0 0.35697 1 16275 16275 49.842 46.999 1 2401200 23858 7959 15668 15674 23642 23642 106 -0.06832701730400004 KMDECQKYAE 10 Unmodified _KMDECQKYAE_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7622680664062 2 622.767931 1243.52131 NaN NaN NaN NaN NaN NaN NaN 162.84 1 158.05 157.55 158.55 -4.7898 0 0 0 2.8426 1 32419 32419 1.9064 0.9441 1 23859 4896;12387 15669 15675 23643 23643 -0.09071093447892054 KMDENQFVA 9 Unmodified _KMDENQFVA_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.269775390625 2 541.252774 1080.491 0.1782 9.645E-05 0.30792 0.00016666 0.48612 0.00026311 541.2530266306458 59.664 0.73531 56.731 56.4 57.135 -2.9333 42 20 3 0 0 0 0.11219 2 11495 11492;11495 51.63 19.488 1 3630600 23860 886 15670 15676 23644;23645 23645 -0.0460308405079104 KMDENQFVA 9 Unmodified _KMDENQFVA_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.281982421875 2 541.252774 1080.491 0.15095 8.1702E-05 0.16984 9.1928E-05 0.32079 0.00017363 541.2528373693539 60.017 0.66512 56.703 56.278 56.943 -3.3139 40 18 3 0 0 0 0.39339 1 11175 11175 43.772 7.6454 1 2852700 23861 886 15670 15676 23646 23646 -0.0460308405079104 KMDENQFVA 9 Unmodified _KMDENQFVA_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2815551757812 2 541.252774 1080.491 0.22264 0.00012051 0.33083 0.00017906 0.55348 0.00029957 541.2529240885042 59.947 0.81302 56.724 56.395 57.208 -3.2237 41 22 2 0 0 0 0.27332 1 11220 11220 51.63 15.503 1 2295000 23862 886 15670 15676 23647 23647 -0.0460308405079104 KMDENQFVA 9 Unmodified _KMDENQFVA_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.252774 1080.491 0.11015 5.9619E-05 0.075374 4.0797E-05 0.18552 0.00010042 541.2529343600395 56.757 0.62815 56.757 56.394 57.022 0 0.028625 -0.00015111 NaN 51.63 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2206600 23863 886 15670 15676 -0.0460308405079104 KMDENQFVAV 10 Unmodified _KMDENQFVAV_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2528076171875 2 590.786981 1179.55941 0.50316 0.00029726 -0.31901 -0.00018847 0.18415 0.00010879 590.786832546952 94.246 0.76711 90.255 89.897 90.665 -3.9907 51 21 3 0 0 0 0.23693 1 18448 18448 67.838 20.089 1 7522200 23864 886 15671 15677 23648 23648 -0.023188394709450222 KMDENQFVAV 10 Unmodified _KMDENQFVAV_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2662353515625 2 590.786981 1179.55941 0.60026 0.00035462 -0.24074 -0.00014223 0.35952 0.0002124 590.7868362091384 94.354 0.70345 90.184 89.828 90.531 -4.1701 43 19 3 0 0 0 0.18754 1 17987 17987 86.332 34.702 1 7252200 23865 886 15671 15677 23649 23649 -0.023188394709450222 KMDENQFVAV 10 Unmodified _KMDENQFVAV_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2634887695312 2 590.786981 1179.55941 0.051328 3.0324E-05 0.34223 0.00020218 0.39355 0.00023251 590.7870770077141 94.119 0.72103 90.275 89.922 90.643 -3.844 42 20 3 0 0 0 0.26296 1 18035 18035 72.968 16.791 1 4837900 23866 886 15671 15677 23650 23650 -0.023188394709450222 KMDPVAYRV 9 Unmodified _KMDPVAYRV_ 0 0 0 nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF nc|ENSG00000172053|P47897-2|QARS1 nc|ENSG00000172053|P47897-2|QARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21282958984375 3 360.19531 1077.5641 -0.55824 -0.00020107 0.43223 0.00015569 -0.126 -4.5386E-05 360.195472032368 63.413 0.76945 63.413 62.945 63.715 0 40 21 3 0 0 0 0.1629 1 12205 12205 42.312 27.907 1 2589300 23867 6190 15672 15678 23651 23651 0.028420894624787252 KMDPVAYRV 9 Unmodified _KMDPVAYRV_ 0 0 0 nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF nc|ENSG00000172053|P47897-2|QARS1 nc|ENSG00000172053|P47897-2|QARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2014465332031 3 360.19531 1077.5641 -0.27314 -9.8384E-05 0.054074 1.9477E-05 -0.21907 -7.8907E-05 360.1953530437409 66.243 0.76523 63.196 62.843 63.608 -3.047 49 21 4 0 0 0 0.57274 1 12782 12782 14.957 7.8554 1 4558700 23868 6190 15672 15678 23652 23652 0.028420894624787252 KMDPVAYRV 9 Unmodified _KMDPVAYRV_ 0 0 0 nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF nc|ENSG00000172053|P47897-2|QARS1 nc|ENSG00000172053|P47897-2|QARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20166015625 3 360.19531 1077.5641 0.27558 9.9263E-05 -0.29392 -0.00010587 -0.018343 -6.6071E-06 360.1951510350667 66.705 0.69967 63.208 62.868 63.568 -3.4965 46 19 3 0 0 0 0.095704 1 12524 12524 57.249 42.844 1 2803500 23869 6190 15672 15678 23653 23653 0.028420894624787252 KMDPVAYRV 9 Unmodified _KMDPVAYRV_ 0 0 0 nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF nc|ENSG00000172053|P47897-2|QARS1 nc|ENSG00000172053|P47897-2|QARS1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 360.19531 1077.5641 -0.37247 -0.00013416 0.31958 0.00011511 -0.052892 -1.9051E-05 360.19537307401356 66.408 0.69538 63.081 62.747 63.442 -3.3268 -0.14361 0.00022199 NaN 57.249 47 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3125200 23870 6190 15672 15678 0.028420894624787252 KMEKKIEMD 9 Unmodified _KMEKKIEMD_ 0 0 0 REV__ENST00000432234.5_1_X:19764461-19765791:-|nuORF REV__ENST00000432234.5_1_X:19764461-19765791:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3240966796875 2 576.293585 1150.57262 NaN NaN NaN NaN NaN NaN NaN 117.94 1 117.94 117.44 118.44 0 0 0 0 0.23508 1 23232 23232 10.074 1.3285 1 + 23871 21633 15673 15679 23654 23654 0.0033527531682011613 KMEKMLENQ 9 Unmodified _KMEKMLENQ_ 0 0 0 ENSG00000112394|ENST00000368851|SLC16A10 ENSG00000112394|ENST00000368851|SLC16A10 ENSG00000112394|ENST00000368851|SLC16A10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3253784179688 2 575.783384 1149.55222 0.23897 0.0001376 0.94167 0.0005422 1.1806 0.00067979 576.2868408923986 136.55 0.13947 131.72 131.66 131.8 -4.8307 5 3 2 0 0 0 0.69259 1 26308 26308 6.7232 1.4263 1 1201200 23872 2695 15674 15680 23655 23655 -0.016578953429871035 KMEPENKYL 9 Unmodified _KMEPENKYL_ 0 0 0 KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant;KHDRBS1|p.P336Hfs*4|1|0.41|ENSG00000121774|chr1:32037932-32037932|C/-|frameshift_variant;KHDRBS1|p.A312Gfs*56|1|0.28|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant;ENST00000307714.12_1_1:32479575-32503673:+|nuORF;nc|ENSG00000121774|Q07666-3|KHDRBS1;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1 KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant KHDRBS1|p.P237Hfs*19|1|0.32|ENSG00000121774|chr1:32033269-32033269|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.327880859375 2 576.291899 1150.56925 NaN NaN NaN NaN NaN NaN NaN 134.61 1 134.61 134.11 135.11 0 0 0 0 0.23508 1 26647 26647 9.3831 0 1 23873 3191 15675 15681 23656 23656 -1.6514655499122455E-05 KMESMEEY 8 Unmodified _KMESMEEY_ 0 0 0 REV__nc|ENSG00000156313|Q92834-3|RPGR REV__nc|ENSG00000156313|Q92834-3|RPGR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6761474609375 2 523.712093 1045.40963 NaN NaN NaN NaN NaN NaN NaN 119.11 1 114.46 113.96 114.96 -4.645 0 0 0 0.21486 1 22854 22854 8.5933 2.8329 1 + 23874 17256 15676 15682 23657 23657 -0.11125527805029378 KMFDVPPLP 9 Unmodified _KMFDVPPLP_ 0 0 0 REV__ENSG00000185862|ENST00000330927|EVI2B REV__ENSG00000185862|ENST00000330927|EVI2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2704467773438 2 522.283346 1042.55214 NaN NaN NaN NaN NaN NaN NaN 114.88 1 114.88 114.38 115.38 0 0 0 0 0.19704 1 22603 22603 0.87518 0.75231 1 + 23875 18992 15677 15683 23658 23658 0.03256472719294834 KMFEVDMKI 9 Unmodified _KMFEVDMKI_ 0 0 0 ENSG00000090060|ENST00000216277|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2177734375 3 380.864572 1139.57189 -0.46575 -0.00017739 0.70902 0.00027004 0.24327 9.2653E-05 380.8647890997664 134.33 0.42216 129.52 129.23 129.65 -4.8175 17 11 2 0 0 0 0.5428 1 25826 25826 4.897 4.6316 1 1203900 23876 1777 15678 15684 23659 23659 0.007684806677616507 KMFEVDMKI 9 Unmodified _KMFEVDMKI_ 0 0 0 ENSG00000090060|ENST00000216277|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.864572 1139.57189 -0.22735 -8.6591E-05 0.057963 2.2076E-05 -0.16939 -6.4515E-05 380.8645106275815 134.18 0.6308 129.54 129.14 129.77 -4.6399 0.066281 -0.00012878 NaN 4.897 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1718100 23877 1777 15678 15684 0.007684806677616507 KMFEVDMKI 9 Unmodified _KMFEVDMKI_ 0 0 0 ENSG00000090060|ENST00000216277|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.864572 1139.57189 0.048293 1.8393E-05 -0.057582 -2.1931E-05 -0.0092898 -3.5382E-06 380.864541381913 134.25 0.52036 129.37 129.16 129.68 -4.8726 -0.10522 -0.0002608 NaN 4.897 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1842800 23878 1777 15678 15684 0.007684806677616507 KMFQVHQV 8 Unmodified _KMFQVHQV_ 0 0 0 nc|ENSG00000134882|Q8NBM4-4|UBAC2;ENST00000480738.1_1_13:99967048-100037586:+|nuORF;nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2 nc|ENSG00000134882|Q8NBM4-4|UBAC2 nc|ENSG00000134882|Q8NBM4-4|UBAC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.1545104980469 3 339.516383 1015.52732 -0.37271 -0.00012654 0.17453 5.9255E-05 -0.19819 -6.7287E-05 339.5163597725953 53.297 0.77813 53.297 53.001 53.779 0 35 21 2 0 0 0 0.8748 1 10205 10205 18.373 6.1324 1 3257000 23879 3879 15679 15685 23660 23660 0.02017837636594777 KMFQVHQV 8 Unmodified _KMFQVHQV_ 0 0 0 nc|ENSG00000134882|Q8NBM4-4|UBAC2;ENST00000480738.1_1_13:99967048-100037586:+|nuORF;nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2 nc|ENSG00000134882|Q8NBM4-4|UBAC2 nc|ENSG00000134882|Q8NBM4-4|UBAC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.1695251464844 3 339.516383 1015.52732 -0.67116 -0.00022787 0.47641 0.00016175 -0.19474 -6.6119E-05 339.5164867437535 56.286 0.64358 53.11 52.761 53.404 -3.1761 31 17 2 0 0 0 0.53679 1 10474 10474 51.63 41.556 1 6491300 23880 3879 15679 15685 23661 23661 0.02017837636594777 KMFQVHQV 8 Unmodified _KMFQVHQV_ 0 0 0 nc|ENSG00000134882|Q8NBM4-4|UBAC2;ENST00000480738.1_1_13:99967048-100037586:+|nuORF;nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2 nc|ENSG00000134882|Q8NBM4-4|UBAC2 nc|ENSG00000134882|Q8NBM4-4|UBAC2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 339.516383 1015.52732 -0.44707 -0.00015179 0.24197 8.2152E-05 -0.20511 -6.9637E-05 339.5164108900818 55.943 0.82327 53.06 52.732 53.556 -2.8837 -0.083388 7.5728E-05 NaN 51.63 36 23 2 NaN NaN NaN NaN 0 NaN NaN 0 8913500 23881 3879 15679 15685 0.02017837636594777 KMFQVHQV 8 Unmodified _KMFQVHQV_ 0 0 0 nc|ENSG00000134882|Q8NBM4-4|UBAC2;ENST00000480738.1_1_13:99967048-100037586:+|nuORF;nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2 nc|ENSG00000134882|Q8NBM4-4|UBAC2 nc|ENSG00000134882|Q8NBM4-4|UBAC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 339.516383 1015.52732 0.070696 2.4002E-05 -0.16918 -5.744E-05 -0.098486 -3.3437E-05 339.5162547254738 56.295 0.63174 53.105 52.738 53.37 -3.1895 -0.037974 -0.00034305 NaN 51.63 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 6061800 23882 3879 15679 15685 0.02017837636594777 KMFSDEILL 9 Unmodified _KMFSDEILL_ 0 0 0 KDELC2|p.P302Lfs*16|1|0.05|ENSG00000178202|chr11:108481373-108481374|-/GATATTTCTTTTTCCAAGAGAAAGAAAAGGA|frameshift_variant;KDELC2|p.S303Vfs*36|1|0.07|ENSG00000178202|chr11:108481371-108481372|-/ATTAC|frameshift_variant;ENSG00000178202|ENST00000323468|POGLUT3;nc|ENSG00000178202|Q7Z4H8-3|POGLUT3;nc|ENSG00000178202|Q7Z4H8-2|POGLUT3 KDELC2|p.P302Lfs*16|1|0.05|ENSG00000178202|chr11:108481373-108481374|-/GATATTTCTTTTTCCAAGAGAAAGAAAAGGA|frameshift_variant KDELC2|p.P302Lfs*16|1|0.05|ENSG00000178202|chr11:108481373-108481374|-/GATATTTCTTTTTCCAAGAGAAAGAAAAGGA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7860107421875 2 548.291368 1094.56818 0.336 0.00018422 -0.12148 -6.6604E-05 0.21452 0.00011762 548.2911236055486 159.2 0.73352 159.2 158.92 159.65 0 33 20 2 0 0 0 0.40905 1 31999 31999 41.84 1.8823 1 4278900 23883 6566 15680 15686 23662 23662 0.02468134165542324 KMIIKLITS 9 Unmodified _KMIIKLITS_ 0 0 0 PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000532107.2_1_14:51374946-51378571:-|nuORF PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69580078125 2 523.835746 1045.65694 NaN NaN NaN NaN NaN NaN NaN 103.95 1 103.95 103.45 104.45 0 0 0 0 0.18489 1 20434 20434 17.113 8.9574 1 23884 1985 15681 15687 23663 23663 0.13593594195867809 KMKEKVERI 9 Unmodified _KMKEKVERI_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71832275390625 3 387.565514 1159.67471 -0.5042 -0.00019541 0.40758 0.00015796 -0.096623 -3.7448E-05 387.5656957022153 17.067 0.31159 15.851 15.705 16.016 -1.2159 19 8 4 0 0 0 0.66754 1 2698 2698 8.4443 1.3426 1 2115100 23885 5705 15682 15688 23664 23664 0.10126309450720328 KMKEKVERI 9 Unmodified _KMKEKVERI_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7103271484375 3 387.565514 1159.67471 -0.47296 -0.0001833 0.43071 0.00016693 -0.042246 -1.6373E-05 387.5656604203656 17.059 0.27752 15.787 15.66 15.938 -1.2722 19 7 4 0 0 0 0.44869 1 2479 2479 22.775 6.2091 1 2173000 23886 5705 15682 15688 23665 23665 0.10126309450720328 KMKEKVERI 9 Unmodified _KMKEKVERI_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 387.565514 1159.67471 -0.19006 -7.3662E-05 -0.014529 -5.631E-06 -0.20459 -7.9293E-05 387.565519270608 15.801 0.4152 15.801 15.507 15.922 0 -0.011779 -0.00033351 NaN 22.775 19 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2511900 23887 5705 15682 15688 0.10126309450720328 KMKLLGSP 8 Unmodified _KMKLLGSP_ 0 0 0 REV__ENST00000263642.2_1_2:163133258-163133306:-|nuORF REV__ENST00000263642.2_1_2:163133258-163133306:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2200622558594 2 437.264956 872.515359 0.91259 0.00039904 0.6144 0.00026865 1.527 0.0006677 437.26520634381114 26.763 0.33542 24.981 24.726 25.061 -1.7821 14 9 2 0 0 0 8448 1 4714 4714 0.0082765 0 1 330010 + 23888 20216 15683 15689 23666 23666 0.07400220893418918 KMKLLGSP 8 Unmodified _KMKLLGSP_ 0 0 0 REV__ENST00000263642.2_1_2:163133258-163133306:-|nuORF REV__ENST00000263642.2_1_2:163133258-163133306:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 437.264956 872.515359 0.20678 9.0416E-05 1.5485 0.00067709 1.7552 0.0007675 437.2656153958852 24.62 0.34059 24.62 24.44 24.781 0 -0.19186 9.1426E-05 NaN 0.0082765 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 858360 + 23889 20216 15683 15689 0.07400220893418918 KMKLLGSP 8 Unmodified _KMKLLGSP_ 0 0 0 REV__ENST00000263642.2_1_2:163133258-163133306:-|nuORF REV__ENST00000263642.2_1_2:163133258-163133306:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 437.264956 872.515359 0.91259 0.00039904 0.6144 0.00026865 1.527 0.0006677 437.26520634381114 26.763 0.33542 24.981 24.726 25.061 -1.7821 0.16852 -0.00072544 NaN 0.0082765 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 330010 + 23890 20216 15683 15689 0.07400220893418918 KMKLLGSP 8 Unmodified _KMKLLGSP_ 0 0 0 REV__ENST00000263642.2_1_2:163133258-163133306:-|nuORF REV__ENST00000263642.2_1_2:163133258-163133306:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 437.264956 872.515359 -0.10416 -4.5546E-05 1.7554 0.00076756 1.6512 0.00072201 437.265691153334 26.758 0.34053 24.835 24.643 24.984 -1.9222 0.023341 0.00027237 NaN 0.0082765 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 467280 + 23891 20216 15683 15689 0.07400220893418918 KMKRRLKK 8 Unmodified _KMKRRLKK_ 0 0 0 SESN3|p.Q273Kfs*14|1|0.37|ENSG00000149212|chr11:95184541-95184541|A/-|frameshift_variant SESN3|p.Q273Kfs*14|1|0.37|ENSG00000149212|chr11:95184541-95184541|A/-|frameshift_variant SESN3|p.Q273Kfs*14|1|0.37|ENSG00000149212|chr11:95184541-95184541|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7884521484375 2 544.36587 1086.71719 0.33513 0.00018243 -3.8209 -0.0020799 -3.4857 -0.0018975 544.8640349159909 138.08 0.17413 138.08 138.01 138.18 0 6 4 2 0 0 0 0.89766 1 27397 27397 0.25148 0.20769 1 2629700 23892 25655 15684 15690 23667 23667 0.17729749369641468 KMKTLKRKKL 10 Unmodified _KMKTLKRKKL_ 0 0 0 ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25177001953125 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 144.24 1 139.57 139.07 140.07 -4.6694 0 0 0 2.8426 1 28553 28553 0.69767 0.55777 1 23893 232 15685 15691 23668 23668 0.2172741643516929 KMKTLKRKKL 10 Unmodified _KMKTLKRKKL_ 0 0 0 ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2474060058594 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 64.364 1 60.906 60.406 61.406 -3.4581 0 0 0 2.8426 1 12041 12041 0.13989 0.13989 1 23894 232 15685 15691 23669 23669 0.2172741643516929 KMKTLKRKKL 10 Unmodified _KMKTLKRKKL_ 0 0 0 ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2469787597656 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 50.016 1 47.009 46.509 47.509 -3.0068 0 0 0 2.8426 1 9182 9182 0 0 1 23895 232 15685 15691 23670 23670 0.2172741643516929 KMKVKKKKVQ 10 Unmodified _KMKVKKKKVQ_ 0 0 0 ENST00000513820.1_1_5:118462594-118462864:-|nuORF ENST00000513820.1_1_5:118462594-118462864:-|nuORF ENST00000513820.1_1_5:118462594-118462864:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7635498046875 2 622.915393 1243.81623 NaN NaN NaN NaN NaN NaN NaN 83.295 1 79.422 78.922 79.922 -3.8736 0 0 0 2.8426 1 15821 15821 0.043787 0.042406 1 23896 10765 15686 15692 23671 23671 0.20407727543874898 KMLEENTNIL 10 Unmodified _KMLEENTNIL_ 0 0 0 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.285888671875 2 602.815738 1203.61692 0.87351 0.00052657 -0.36953 -0.00022276 0.50398 0.0003038 602.8155477816889 103.65 0.61124 99.432 99.213 99.825 -4.2183 31 17 2 0 0 0 0.21282 1 20398 20398 61.602 17.83 1 2929100 23897 4182 15687 15693 23672 23672 0.023260027346395873 KMLEENTNIL 10 Unmodified _KMLEENTNIL_ 0 0 0 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2911987304688 2 602.815738 1203.61692 0.54762 0.00033011 0.56015 0.00033767 1.1078 0.00066778 602.8159895415989 103.88 0.51508 99.535 99.283 99.798 -4.346 37 14 3 0 0 0 0.3662 1 19885 19885 49.554 15.153 1 3274500 23898 4182 15687 15693 23673 23673 0.023260027346395873 KMLESITNEL 10 Unmodified _KMLESITNEL_ 0 0 0 ENSG00000179151|ENST00000315127|EDC3 ENSG00000179151|ENST00000315127|EDC3 ENSG00000179151|ENST00000315127|EDC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2715454101562 2 589.310289 1176.60602 0.53499 0.00031528 -0.53175 -0.00031337 0.0032401 1.9094E-06 589.3102655623243 126.36 0.49553 121.74 121.38 121.87 -4.6172 26 13 3 0 0 0 0.38172 1 24889 24889 32.037 15.888 1 2853300 23899 6616 15688 15694 23674 23674 0.02478600360359451 KMLESITNEL 10 Unmodified _KMLESITNEL_ 0 0 0 ENSG00000179151|ENST00000315127|EDC3 ENSG00000179151|ENST00000315127|EDC3 ENSG00000179151|ENST00000315127|EDC3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 589.310289 1176.60602 0.33916 0.00019987 0.86027 0.00050697 1.1994 0.00070684 589.3102636205658 122.02 0.34396 122.02 121.82 122.17 0 0.17055 0.0011235 NaN 32.037 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1476500 23900 6616 15688 15694 0.02478600360359451 KMLESITNEL 10 Unmodified _KMLESITNEL_ 0 0 0 ENSG00000179151|ENST00000315127|EDC3 ENSG00000179151|ENST00000315127|EDC3 ENSG00000179151|ENST00000315127|EDC3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.310289 1176.60602 0.66047 0.00038922 -0.066608 -3.9253E-05 0.59386 0.00034997 589.3100880776545 126.61 0.59581 121.82 121.4 121.99 -4.7958 -0.036478 3.1071E-05 NaN 32.037 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2188500 23901 6616 15688 15694 0.02478600360359451 KMLESITNEL 10 Unmodified _KMLESITNEL_ 0 0 0 ENSG00000179151|ENST00000315127|EDC3 ENSG00000179151|ENST00000315127|EDC3 ENSG00000179151|ENST00000315127|EDC3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 589.310289 1176.60602 0.19422 0.00011445 0.18188 0.00010719 0.3761 0.00022164 589.3102170690174 126.54 0.43896 121.84 121.57 122.01 -4.6998 -0.018041 0.00032395 NaN 32.037 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1442300 23902 6616 15688 15694 0.02478600360359451 KMLIRNLLK 9 Unmodified _KMLIRNLLK_ 0 0 0 ENSG00000162889|ENST00000367103|MAPKAPK2;ENST00000479009.1_1_1:206904950-206905282:+|nuORF;nc|ENSG00000162889|P49137-2|MAPKAPK2 ENSG00000162889|ENST00000367103|MAPKAPK2 ENSG00000162889|ENST00000367103|MAPKAPK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 565.3742065429688 2 564.867911 1127.72127 0.29299 0.0001655 3.5877 0.0020266 3.8807 0.0021921 564.8689195178716 166.33 0.17015 166.33 166.27 166.44 0 6 4 2 0 0 0 0.6231 1 33886 33886 0.12781 0.098532 1 29439000 23903 5377 15689 15695 23675 23675 0.16251794072672965 KMMEKKRE 8 Unmodified _KMMEKKRE_ 0 0 0 nc|nan|Q9BVC5-2|C2orf49;ENSG00000135974|ENST00000258457|C2orf49 nc|nan|Q9BVC5-2|C2orf49 nc|nan|Q9BVC5-2|C2orf49 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2021179199219 3 360.528183 1078.56272 -0.39148 -0.00014114 -1.9017 -0.00068563 -2.2932 -0.00082677 360.5275711509654 64.677 0.70094 61.394 60.991 61.692 -3.2832 30 19 2 0 0 0 1.0252 1 12117 12117 6.2058 0 1 1101600 23904 3973 15690 15696 23676 23676 0.026581321020785253 KMMENLTTL 9 Unmodified _KMMENLTTL_ 0 0 0 ENSG00000066557|ENST00000370952|LRRC40 ENSG00000066557|ENST00000370952|LRRC40 ENSG00000066557|ENST00000370952|LRRC40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2750854492188 2 540.775028 1079.5355 0.58514 0.00031643 1.1069 0.00059857 1.692 0.000915 541.2778668129026 104.97 0.58701 104.97 104.59 105.17 0 26 16 2 0 0 0 0.11219 1 20617 20617 51.63 7.8574 1 1967800 23905 1373 15691 15697 23677 23677 -0.0010839622896128276 KMMENLTTL 9 Unmodified _KMMENLTTL_ 0 0 0 ENSG00000066557|ENST00000370952|LRRC40 ENSG00000066557|ENST00000370952|LRRC40 ENSG00000066557|ENST00000370952|LRRC40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2757568359375 2 540.775028 1079.5355 -0.26646 -0.0001441 -0.38715 -0.00020936 -0.65361 -0.00035346 540.7748739858147 109.12 0.66406 104.74 104.3 104.96 -4.3776 37 18 3 0 0 0 0.029139 1 21501 21501 82.529 17.294 1 3935700 23906 1373 15691 15697 23678 23678 -0.0010839622896128276 KMMENLTTL 9 Unmodified _KMMENLTTL_ 0 0 0 ENSG00000066557|ENST00000370952|LRRC40 ENSG00000066557|ENST00000370952|LRRC40 ENSG00000066557|ENST00000370952|LRRC40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2770385742188 2 540.775028 1079.5355 -0.076072 -4.1138E-05 -0.15811 -8.5501E-05 -0.23418 -0.00012664 540.7748418585155 109.17 0.6564 104.72 104.36 105.02 -4.4518 31 18 2 0 0 0 0.063365 1 20978 20978 66.457 14.827 1 3582600 23907 1373 15691 15697 23679 23679 -0.0010839622896128276 KMMENLTTL 9 Unmodified _KMMENLTTL_ 0 0 0 ENSG00000066557|ENST00000370952|LRRC40 ENSG00000066557|ENST00000370952|LRRC40 ENSG00000066557|ENST00000370952|LRRC40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.276123046875 2 540.775028 1079.5355 0.74742 0.00040419 -1.1212 -0.00060632 -0.37378 -0.00020213 540.7743409365063 108.96 0.70131 104.77 104.39 105.09 -4.1826 29 19 2 0 0 0 0.045725 1 20968 20968 72.968 12.894 1 2681900 23908 1373 15691 15697 23680 23680 -0.0010839622896128276 KMMKDLESL 9 Unmodified _KMMKDLESL_ 0 0 0 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77294921875 2 547.782853 1093.55115 0.0493 2.7005E-05 -1.1667 -0.00063909 -1.1174 -0.00061208 547.7825654468303 81.469 0.76174 77.63 77.368 78.13 -3.8392 40 18 3 0 0 0 0.075017 3 15471 15451;15471;15496 63.227 28.826 1 4405000 23909 2539 15692 15698 23681;23682;23683 23682 0.008118902880823953 KMNIMRRMYKL 11 Unmodified _KMNIMRRMYKL_ 0 0 0 REV__ENST00000439211.6_1_5:79924862-79924931:-|nuORF REV__ENST00000439211.6_1_5:79924862-79924931:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.4041748046875 2 742.406552 1482.79855 NaN NaN NaN NaN NaN NaN NaN 145.75 1 140.75 140.25 141.25 -5 0 0 0 0.2367 1 28191 28191 2.9952 0.26005 1 + 23910 21692 15693 15699 23684 23684 0.07646320955041119 KMNRFYQG 8 Unmodified _KMNRFYQG_ 0 0 0 REV__ENSG00000107187|ENST00000371748|LHX3 REV__ENSG00000107187|ENST00000371748|LHX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2789916992188 2 522.258194 1042.50183 0.54176 0.00028294 -0.31834 -0.00016626 0.22342 0.00011668 522.759407421578 103.82 0.42467 103.82 103.58 104 0 20 11 3 0 0 0 0.64227 1 20370 20370 19.439 19.439 1 1996900 + 23911 15078 15694 15700 23685 23685 -0.017716368858373244 KMNVCCFDY 9 Unmodified _KMNVCCFDY_ 0 0 0 REV__DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant REV__DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 374.8413391113281 3 374.818746 1121.43441 0.23122 8.6665E-05 -0.5202 -0.00019498 -0.28898 -0.00010831 374.81854899197884 93.437 0.097496 89.294 89.213 89.31 -4.1435 4 2 2 0 0 0 0.81221 1 17809 17809 1.1933 0.12188 1 306330 + 23912 13710 15695 15701 23686 23686 -0.1214517120331493 KMPQDARKI 9 Unmodified _KMPQDARKI_ 0 0 0 SYCP2|p.N1164Tfs*34|1|0.15|ENSG00000196074|chr20:59873920-59873920|T/-|frameshift_variant;SYCP2|p.I1202*|1|0.2|ENSG00000196074|chr20:59869935-59869935|T/-|frameshift_variant;SYCP2|p.I1202Nfs*14|1|0.35|ENSG00000196074|chr20:59869934-59869935|-/T|frameshift_variant;SYCP2|p.L1317Tfs*3|1|0.49|ENSG00000196074|chr20:59868452-59868453|-/T|frameshift_variant;SYCP2|p.K1410Nfs*10|1|0.29|ENSG00000196074|chr20:59866383-59866383|T/-|frameshift_variant;SYCP2|p.S1456Afs*9|1|0.28|ENSG00000196074|chr20:59865820-59865820|T/-|frameshift_variant;ENSG00000196074|ENST00000357552|SYCP2;SYCP2|p.V338Yfs*8|1|0.39|ENSG00000196074|chr20:59907386-59907386|T/-|frameshift_variant SYCP2|p.N1164Tfs*34|1|0.15|ENSG00000196074|chr20:59873920-59873920|T/-|frameshift_variant SYCP2|p.N1164Tfs*34|1|0.15|ENSG00000196074|chr20:59873920-59873920|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.777099609375 2 543.808051 1085.60155 0.37029 0.00020137 1.1352 0.00061733 1.5055 0.0008187 543.8083211723947 110.71 0.70132 110.71 110.33 111.03 0 40 19 3 0 0 0 0.42844 1 21760 21760 24.021 0 1 2524200 23913 7229 15696 15702 23687 23687 0.06217180728117455 KMPRLIAKV 9 Unmodified _KMPRLIAKV_ 0 0 0 ENST00000559249.5_1_14:103802197-103802459:+|nuORF;ENSG00000100664|ENST00000216554|EIF5 ENST00000559249.5_1_14:103802197-103802459:+|nuORF ENST00000559249.5_1_14:103802197-103802459:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 352.2384338378906 3 352.563445 1054.66851 -0.32104 -0.00011319 0.18008 6.3491E-05 -0.14096 -4.9697E-05 352.56352212892784 67.822 1.5567 64.714 63.756 65.312 -3.1086 74 44 2 0 0 0 0.54058 1 12989 12989 12.241 9.7422 1 2773100 23914 2004 15697 15703 23688 23688 0.14335836009854575 KMPRLIAKV 9 Unmodified _KMPRLIAKV_ 0 0 0 ENST00000559249.5_1_14:103802197-103802459:+|nuORF;ENSG00000100664|ENST00000216554|EIF5 ENST00000559249.5_1_14:103802197-103802459:+|nuORF ENST00000559249.5_1_14:103802197-103802459:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 352.2315979003906 3 352.563445 1054.66851 0.32442 0.00011438 -0.27029 -9.5295E-05 0.05413 1.9084E-05 352.56329039531107 68.422 1.4765 64.886 63.884 65.361 -3.5362 66 41 2 0 0 0 0.15889 2 12890 12890;12892 22.736 22.736 1 3076800 23915 2004 15697 15703 23689;23690 23689 0.14335836009854575 KMPRLIAKV 9 Unmodified _KMPRLIAKV_ 0 0 0 ENST00000559249.5_1_14:103802197-103802459:+|nuORF;ENSG00000100664|ENST00000216554|EIF5 ENST00000559249.5_1_14:103802197-103802459:+|nuORF ENST00000559249.5_1_14:103802197-103802459:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 352.563445 1054.66851 -0.35927 -0.00012666 0.28919 0.00010196 -0.070072 -2.4705E-05 352.56350047411075 68 1.4447 64.673 63.971 65.415 -3.3268 -0.084608 0.00026355 NaN 22.736 86 41 3 NaN NaN NaN NaN 0 NaN NaN 0 2846200 23916 2004 15697 15703 0.14335836009854575 KMQEQQRQFR 10 Unmodified _KMQEQQRQFR_ 0 0 0 REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2401428222656 3 460.23846 1377.69355 NaN NaN NaN NaN NaN NaN NaN 22.221 1 22.221 21.721 22.721 0 0 0 0 2.8426 1 3751 3751 3.8763 0.80407 1 + 23917 15522 15698 15704 23691 23691 0.019812390744618824 KMQILLKKRYY 11 Unmodified _KMQILLKKRYY_ 0 0 0 REV__ENSG00000214414|ENST00000398290|TRIM77 REV__ENSG00000214414|ENST00000398290|TRIM77 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3768920898438 2 742.444514 1482.87448 NaN NaN NaN NaN NaN NaN NaN 117.51 1 113.01 112.51 113.51 -4.4965 0 0 0 0.23698 1 23163 23163 1.4819 0 1 + 23918 19668 15699 15705 23692 23692 0.15235364398495221 KMQSTRQKIYW 11 Unmodified _KMQSTRQKIYW_ 0 0 0 ENST00000409592.7_1_2:225761057-225796351:-|nuORF ENST00000409592.7_1_2:225761057-225796351:-|nuORF ENST00000409592.7_1_2:225761057-225796351:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26324462890625 3 490.262494 1467.76565 NaN NaN NaN NaN NaN NaN NaN 15.612 1 14.396 13.896 14.896 -1.2159 0 0 0 0.22632 1 2415 2415 0.50596 0 1 23919 9565 15700 15706 23693 23693 0.05048153428219848 KMRGPGDL 8 Unmodified _KMRGPGDL_ 0 0 0 ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L;BCL9L|p.P894Lfs*17|1|0.29|ENSG00000186174|chr11:118901062-118901062|G/-|frameshift_variant;nc|ENSG00000186174|Q86UU0-3|BCL9L;BCL9L|p.P1355Lfs*6|1|0.23|ENSG00000186174|chr11:118898851-118898851|G/-|frameshift_variant;BCL9L|p.P1249Lfs*32|1|0.58|ENSG00000186174|chr11:118899171-118899171|C/-|frameshift_variant;BCL9L|p.P1198Lfs*5|3|0.34|ENSG00000186174|chr11:118899327-118899327|C/-|frameshift_variant;BCL9L|p.P1127Hfs*21|1|0.43|ENSG00000186174|chr11:118899943-118899943|G/-|frameshift_variant ENSG00000186174|ENST00000683865|BCL9L ENSG00000186174|ENST00000683865|BCL9L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2352600097656 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 94.291 1 94.291 93.791 94.791 0 0 0 0 0.21486 1 18463 18463 5.2307 2.3415 1 23920 7040 15701 15707 23694 23694 0.012492891941064954 KMRVERWAFNF 11 Unmodified _KMRVERWAFNF_ 0 0 0 nc|ENSG00000108370|O75916-4|RGS9;nc|ENSG00000108370|O75916-2|RGS9;nc|ENSG00000108370|O75916-3|RGS9;ENST00000581175.5_1_17:63133658-63206777:+|nuORF;nc|ENSG00000108370|O75916-5|RGS9;ENSG00000108370|ENST00000262406|RGS9 nc|ENSG00000108370|O75916-4|RGS9 nc|ENSG00000108370|O75916-4|RGS9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.384765625 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 87.198 1 87.198 86.698 87.698 0 0 0 0 0.2367 1 17020 17020 2.9952 0 1 23921 2468 15702 15708 23695 23695 0.03335590493611562 KMSLNAFWVWP 11 Unmodified _KMSLNAFWVWP_ 0 0 0 REV__nc|ENSG00000167995|O76090-3|BEST1 REV__nc|ENSG00000167995|O76090-3|BEST1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23895263671875 3 460.237398 1377.69036 NaN NaN NaN NaN NaN NaN NaN 70.686 1 67.219 66.719 67.719 -3.467 0 0 0 0.22632 1 13390 13390 0.026206 0 1 + 23922 24153 15703 15709 23696 23696 0.016625959677639912 KMSQVAPSL 9 Unmodified _KMSQVAPSL_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2530517578125 2 480.762778 959.511002 -0.072503 -3.4857E-05 0.0076192 3.663E-06 -0.064884 -3.1194E-05 480.7628676290066 70.263 0.73946 67.014 66.686 67.425 -3.2492 40 20 3 0 0 0 0.19141 1 13703 13703 41.956 5.8285 1 4832500 23923 2060 15704 15710 23697 23697 0.02962711679822405 KMSQVAPSL 9 Unmodified _KMSQVAPSL_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2530517578125 2 480.762778 959.511002 0.29469 0.00014167 -1.0376 -0.00049883 -0.74289 -0.00035715 480.7626763811209 70.561 0.91904 67.094 66.673 67.592 -3.467 39 25 2 0 0 0 0.27332 1 13370 13370 36.506 9.283 1 3941400 23924 2060 15704 15710 23698 23698 0.02962711679822405 KMSQVAPSL 9 Unmodified _KMSQVAPSL_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.762778 959.511002 -0.34605 -0.00016637 0.0060594 2.9131E-06 -0.33999 -0.00016346 480.763022548615 67.149 0.85317 67.149 66.868 67.721 0 0.060544 0.00026354 NaN 41.956 51 23 3 NaN NaN NaN NaN 0 NaN NaN 0 5858600 23925 2060 15704 15710 0.02962711679822405 KMTAYITEL 9 Oxidation (M) _KM(Oxidation (M))TAYITEL_ KM(1)TAYITEL KM(53)TAYITEL 0 0 1 nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT nc|ENSG00000143437|P27540-2|ARNT nc|ENSG00000143437|P27540-2|ARNT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7822875976562 2 543.281 1084.54745 0.08352 4.5375E-05 0.25568 0.0001389 0.3392 0.00018428 543.2808750001566 94.059 1.1561 94.059 93.472 94.628 0 54 32 3 0 0 0 0.10699 1 18441 18441 53.404 7.3831 1 1721400 23926 4487 15705 15711 23699 23699 70 0.00855543785860391 KMTTFLST 8 Unmodified _KMTTFLST_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647644042969 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 86.602 1 82.875 82.375 83.375 -3.727 0 0 0 0.23899 1 16930 16930 1.3295 0 1 + 23927 18798 15706 15712 23700 23700 0.00691620414204408 KMTTHLKKL 9 Unmodified _KMTTHLKKL_ 0 0 0 nc|ENSG00000116030|P63165-2|SUMO1;ENST00000439961.2_1_1:160287226-160287493:+|nuORF;ENSG00000116030|ENST00000392246|SUMO1 nc|ENSG00000116030|P63165-2|SUMO1 nc|ENSG00000116030|P63165-2|SUMO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.1889343261719 3 367.226722 1098.65834 -0.26658 -9.7896E-05 0.55515 0.00020387 0.28857 0.00010597 367.2268917019696 20.109 0.27574 18.783 18.595 18.871 -1.3251 15 7 3 0 0 0 0.10782 1 3105 3105 43.858 31.618 1 921880 23928 2902 15707 15713 23701 23701 0.11295228284643599 KMTTHLKKL 9 Unmodified _KMTTHLKKL_ 0 0 0 nc|ENSG00000116030|P63165-2|SUMO1;ENST00000439961.2_1_1:160287226-160287493:+|nuORF;ENSG00000116030|ENST00000392246|SUMO1 nc|ENSG00000116030|P63165-2|SUMO1 nc|ENSG00000116030|P63165-2|SUMO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.52130126953125 3 367.226722 1098.65834 -1.546 -0.00056774 1.6066 0.00058997 0.060543 2.2233E-05 367.22733292505745 20.487 0.38605 18.806 18.594 18.98 -1.6809 14 10 2 0 0 0 0.1428 1 3150 3150 36.127 27.971 1 442090 23929 2902 15707 15713 23702 23702 0.11295228284643599 KMTTHLKKL 9 Unmodified _KMTTHLKKL_ 0 0 0 nc|ENSG00000116030|P63165-2|SUMO1;ENST00000439961.2_1_1:160287226-160287493:+|nuORF;ENSG00000116030|ENST00000392246|SUMO1 nc|ENSG00000116030|P63165-2|SUMO1 nc|ENSG00000116030|P63165-2|SUMO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 367.226722 1098.65834 -0.25454 -9.3473E-05 0.7071 0.00025967 0.45257 0.00016619 367.22687113782234 18.599 0.20832 18.599 18.511 18.719 0 -0.1497 0.00016479 NaN 43.858 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 768570 23930 2902 15707 15713 0.11295228284643599 KMTTHLKKL 9 Unmodified _KMTTHLKKL_ 0 0 0 nc|ENSG00000116030|P63165-2|SUMO1;ENST00000439961.2_1_1:160287226-160287493:+|nuORF;ENSG00000116030|ENST00000392246|SUMO1 nc|ENSG00000116030|P63165-2|SUMO1 nc|ENSG00000116030|P63165-2|SUMO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 367.226722 1098.65834 0.013441 4.9358E-06 0.41038 0.0001507 0.42382 0.00015564 367.22677881570104 20.26 0.27583 18.863 18.688 18.964 -1.3966 0.11462 -0.00016211 NaN 43.858 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 713990 23931 2902 15707 15713 0.11295228284643599 KMTVAIVKA 9 Unmodified _KMTVAIVKA_ 0 0 0 ENST00000468058.1_1_19:7975099-7977313:+|nuORF;nc|ENSG00000076984|O14733-2|MAP2K7;MAP2K7|p.P292Qfs*119|2|0.25|ENSG00000076984|chr19:7911264-7911264|C/-|frameshift_variant;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7 ENST00000468058.1_1_19:7975099-7977313:+|nuORF ENST00000468058.1_1_19:7975099-7977313:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2445983886719 2 480.799163 959.583773 0.038142 1.8338E-05 -0.14647 -7.0422E-05 -0.10833 -5.2083E-05 480.7991460323325 60.757 0.51955 57.824 57.477 57.996 -2.9333 24 14 2 0 0 0 0.30909 1 11683 11683 34.932 13.395 1 1941600 23932 10161 15708 15714 23703 23703 0.10236465473235512 KMTVAIVKA 9 Unmodified _KMTVAIVKA_ 0 0 0 ENST00000468058.1_1_19:7975099-7977313:+|nuORF;nc|ENSG00000076984|O14733-2|MAP2K7;MAP2K7|p.P292Qfs*119|2|0.25|ENSG00000076984|chr19:7911264-7911264|C/-|frameshift_variant;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7 ENST00000468058.1_1_19:7975099-7977313:+|nuORF ENST00000468058.1_1_19:7975099-7977313:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24383544921875 2 480.799163 959.583773 0.11664 5.6081E-05 -0.1099 -5.284E-05 0.0067402 3.2407E-06 480.79909584843205 61.107 0.55962 57.738 57.477 58.037 -3.3694 27 15 2 0 0 0 0.79986 1 11385 11385 18.373 2.224 1 2240300 23933 10161 15708 15714 23704 23704 0.10236465473235512 KMVGTTSVV 9 Unmodified _KMVGTTSVV_ 0 0 0 QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant;ENSG00000198218|ENST00000395443|QRICH1 QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5278015136719 2 461.257328 920.500103 0.39467 0.00018204 -0.43484 -0.00020057 -0.040169 -1.8528E-05 461.2569823226911 50.261 0.48024 50.261 49.958 50.438 0 27 13 3 0 0 0 0.45788 1 9516 9516 39.95 10.868 1 3438600 23934 7438 15709 15715 23705 23705 0.036673093055583195 KMVGTTSVV 9 Unmodified _KMVGTTSVV_ 0 0 0 QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant;ENSG00000198218|ENST00000395443|QRICH1 QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.257328 920.500103 0.0057523 2.6533E-06 0.12678 5.8479E-05 0.13253 6.1132E-05 461.257291516672 53.224 0.45776 50.137 49.899 50.356 -3.0876 0.0059816 -5.2605E-05 NaN 39.95 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4437100 23935 7438 15709 15715 0.036673093055583195 KMVGTTSVV 9 Unmodified _KMVGTTSVV_ 0 0 0 QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant;ENSG00000198218|ENST00000395443|QRICH1 QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.257328 920.500103 -0.049444 -2.2807E-05 0.23937 0.00011041 0.18992 8.7603E-05 461.2573919008979 53.181 0.50985 50.085 49.83 50.339 -3.0954 -0.045312 5.1257E-05 NaN 39.95 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3998300 23936 7438 15709 15715 0.036673093055583195 KMWDPHND 8 Unmodified _KMWDPHND_ 0 0 0 nc|ENSG00000104852|P08621-3|SNRNP70;nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70;SNRNP70|p.D100Mfs*11|1|0.34|ENSG00000104852|chr19:49098455-49098455|G/-|frameshift_variant nc|ENSG00000104852|P08621-3|SNRNP70 nc|ENSG00000104852|P08621-3|SNRNP70 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2589721679688 2 521.724184 1041.43381 0.21579 0.00011258 -0.41483 -0.00021643 -0.19904 -0.00010384 521.723704226679 32.677 0.27846 32.677 32.536 32.815 0 14 7 2 0 0 0 1.006 1 5926 5926 13.615 11.037 1 745030 23937 2260 15710 15716 23706 23706 -0.08524506536514309 KMWFRFFHGYF 11 Unmodified _KMWFRFFHGYF_ 0 0 0 REV__ENSG00000179387|ENST00000323570|ELMOD2 REV__ENSG00000179387|ENST00000323570|ELMOD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2599487304688 3 522.588542 1564.7438 NaN NaN NaN NaN NaN NaN NaN 164.07 1 159 158.5 159.5 -5.0648 0 0 0 0.23698 1 31969 31969 0.50596 0.13928 1 + 23938 18653 15711 15717 23707 23707 -0.015986065297283858 KMWHSRRKRKR 11 Unmodified _KMWHSRRKRKR_ 0 0 0 REV__CTNNBL1|p.R58Gfs*25|4|0.36|ENSG00000132792|chr20:37733014-37733014|A/-|frameshift_variant REV__CTNNBL1|p.R58Gfs*25|4|0.36|ENSG00000132792|chr20:37733014-37733014|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6864624023438 3 523.644155 1567.91064 NaN NaN NaN NaN NaN NaN NaN 144.88 1 140.21 139.71 140.71 -4.6694 0 0 0 0.22632 1 28705 28705 1.4551 0.94916 1 + 23939 13604 15712 15718 23708 23708 0.14939679138547035 KMYEEFLSKV 10 Unmodified _KMYEEFLSKV_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25262451171875 3 425.221413 1272.64241 0.35558 0.0001512 -0.18882 -8.029E-05 0.16676 7.0912E-05 425.221315136696 124.6 0.74397 119.83 119.42 120.16 -4.7681 71 20 4 0 0 0 0.21976 1 23923 23923 53.798 34.654 1 19813000 23940 2505 15713 15719 23709 23709 0.01699477257034232 KMYEEFLSKV 10 Unmodified _KMYEEFLSKV_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 425.221413 1272.64241 0.094617 4.0233E-05 0.041868 1.7803E-05 0.13648 5.8036E-05 425.2213750867093 120.07 0.63152 120.07 119.79 120.43 0 0.1938 1.2866E-06 NaN 53.798 45 17 3 NaN NaN NaN NaN 0 NaN NaN 0 10317000 23941 2505 15713 15719 0.01699477257034232 KMYEEFLSKV 10 Unmodified _KMYEEFLSKV_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 425.221413 1272.64241 0.0097962 4.1655E-06 0.10392 4.4188E-05 0.11371 4.8354E-05 425.22145807634627 124.35 0.83829 119.77 119.34 120.18 -4.5757 -0.10335 8.0442E-05 NaN 53.798 75 23 4 NaN NaN NaN NaN 0 NaN NaN 0 25314000 23942 2505 15713 15719 0.01699477257034232 KMYEEFLSKV 10 Unmodified _KMYEEFLSKV_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 425.221413 1272.64241 -0.025379 -1.0792E-05 0.19901 8.4623E-05 0.17363 7.3831E-05 425.2214948210855 124.42 0.82928 119.83 119.44 120.27 -4.5926 -0.04575 0.00020175 NaN 53.798 74 22 4 NaN NaN NaN NaN 0 NaN NaN 0 12990000 23943 2505 15713 15719 0.01699477257034232 KMYNKAVKL 9 Unmodified _KMYNKAVKL_ 0 0 0 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 365.4977722167969 3 365.551205 1093.63179 NaN NaN NaN NaN NaN NaN NaN 34.335 1 32.119 31.619 32.619 -2.2158 0 0 0 0.19687 1 6015 6015 8.1555 3.2585 1 23944 4260 15714 15720 23710 23710 0.0887153939329437 KNALEVTTDVL 11 Unmodified _KNALEVTTDVL_ 0 0 0 REV__ENSG00000115524|ENST00000335508|SF3B1 REV__ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.300537109375 2 601.834985 1201.65542 0.3949 0.00023767 2.6621 0.0016022 3.057 0.0018398 602.3384075295279 149.86 0.21324 149.86 149.7 149.91 0 7 5 2 0 0 0 0.74417 1 29985 29985 8.7454 0 1 2177700 + 23945 15435 15715 15721 23711 23711 0.06265631640781066 KNALRREG 8 Unmodified _KNALRREG_ 0 0 0 REV__JMJD1C|p.A1206Efs*30|1|0.07|ENSG00000171988|chr10:63208052-63208053|-/GTAAAGTT|frameshift_variant REV__JMJD1C|p.A1206Efs*30|1|0.07|ENSG00000171988|chr10:63208052-63208053|-/GTAAAGTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 472.27716064453125 2 472.275232 942.535912 NaN NaN NaN NaN NaN NaN NaN 165.75 1 160.8 160.3 161.3 -4.9484 0 0 0 0.21452 1 32411 32411 13.508 4.1604 1 + 23946 12929 15716 15722 23712 23712 0.062345275974166725 KNAVINHKT 9 Unmodified _KNAVINHKT_ 0 0 0 tr|U7SM02|U7SM02_FUSNUSseBproteinN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02002PE=4SV=1 tr|U7SM02|U7SM02_FUSNUSseBproteinN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02002PE=4SV=1 tr|U7SM02|U7SM02_FUSNUSseBproteinN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02002PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.7985229492188 2 512.79854 1023.58253 NaN NaN NaN NaN NaN NaN NaN 163.99 1 163.99 163.49 164.49 0 0 0 0 0.21065 1 33110 33110 20.454 2.3186 1 23947 25997 15717 15723 23713 23713 0.07167967428688371 KNAYLEDQD 9 Unmodified _KNAYLEDQD_ 0 0 0 tr|U7T256|U7T256_FUSNUReplicativeDNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00477PE=3SV=1 tr|U7T256|U7T256_FUSNUReplicativeDNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00477PE=3SV=1 tr|U7T256|U7T256_FUSNUReplicativeDNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00477PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7671508789062 2 548.251286 1094.48802 0.2013 0.00011036 -3.9578 -0.0021699 -3.7565 -0.0020595 548.2492709124433 65.162 0.10071 62.115 62.038 62.139 -3.047 4 2 2 0 0 0 0.69192 1 12591 12591 14.838 2.5976 1 1076900 23948 26343 15718 15724 23714 23714 -0.05544635903947892 KNCAHISR 8 Unmodified _KNCAHISR_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 130.21 1 125.57 125.07 126.07 -4.6359 0 0 0 0.21486 1 25662 25662 1.4819 0 1 + 23949 17487 15719 15725 23715 23715 0.0042320979990790875 KNDLIVRL 8 Unmodified _KNDLIVRL_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1446533203125 3 324.206315 969.597115 -0.18214 -5.9052E-05 0.11594 3.759E-05 -0.066201 -2.1463E-05 324.2063014344911 76.986 0.52254 76.986 76.766 77.289 0 24 14 3 0 0 0 1.0278 1 14933 14933 1.4819 0.15237 1 1038200 23950 7191 15720 15726 23716 23716 0.11110039576851705 KNDLTCCLC 9 Unmodified _KNDLTCCLC_ 0 0 0 TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2 TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.159423828125 3 338.146862 1011.41876 NaN NaN NaN NaN NaN NaN NaN 115.36 1 110.88 110.38 111.38 -4.4726 0 0 0 0.23508 1 22738 22738 2.7352 1.5419 1 23951 5435 15721 15727 23717 23717 -0.08649457720389364 KNEDETSP 8 Unmodified _KNEDETSP_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23736572265625 2 460.203804 918.393055 0.55158 0.00025384 -0.066943 -3.0807E-05 0.48464 0.00022303 460.2035725418546 29.394 0.77977 27.438 27.015 27.795 -1.9561 27 21 2 0 0 0 8448 1 5303 5303 1.7423 1.334 1 356160 + 23952 16307 15722 15728 23718 23718 -0.06940569375126415 KNEEFLKKYER 11 Unmodified _KNEEFLKKYER_ 0 0 0 REV__ENSG00000078114|ENST00000377122|NEBL REV__ENSG00000078114|ENST00000377122|NEBL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.4019775390625 2 742.398815 1482.78308 NaN NaN NaN NaN NaN NaN NaN 150.19 1 145.46 144.96 145.96 -4.7323 0 0 0 0.23429 1 29828 29828 4.897 1.9018 1 + 23953 14374 15723 15729 23719 23719 0.06099772234847478 KNEHCECH 8 Unmodified _KNEHCECH_ 0 0 0 ENSG00000133247|ENST00000255613|KMT5C ENSG00000133247|ENST00000255613|KMT5C ENSG00000133247|ENST00000255613|KMT5C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 500.2440185546875 2 500.192193 998.369834 NaN NaN NaN NaN NaN NaN NaN 164.47 1 164.47 163.97 164.97 0 0 0 0 0.21486 1 33263 33263 4.756 0 1 23954 3793 15724 15730 23720 23720 -0.12941609965105272 KNELFGDCCLC 11 Unmodified _KNELFGDCCLC_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.776123046875 2 622.759052 1243.50355 NaN NaN NaN NaN NaN NaN NaN 145.67 1 140.67 140.17 141.17 -5 0 0 0 0.23379 1 28175 28175 5.2969 1.3525 1 23955 7385 15725 15731 23721 23721 -0.10846131974403761 KNEMIILRCRL 11 Unmodified _KNEMIILRCRL_ 0 0 0 REV__ENST00000264331.8_2_3:25665929-25666201:-|nuORF REV__ENST00000264331.8_2_3:25665929-25666201:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 694.8304443359375 2 694.896874 1387.7792 NaN NaN NaN NaN NaN NaN NaN 171.35 1 166.56 166.06 167.06 -4.7898 0 0 0 0.22024 1 34837 34837 0.65807 0 1 + 23956 20230 15726 15732 23722 23722 0.10081687935780792 KNENESCADRD 11 Unmodified _KNENESCADRD_ 0 0 0 nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;BDP1|p.T1314Qfs*10|1|0.15|ENSG00000145734|chr5:71511028-71511028|A/-|frameshift_variant;nc|ENSG00000145734|A6H8Y1-4|BDP1;nc|ENSG00000145734|A6H8Y1-3|BDP1;nc|ENSG00000145734|A6H8Y1-5|BDP1;ENST00000508157.3_1_5:70790975-70807035:+|nuORF nc|ENSG00000145734|A6H8Y1-2|BDP1 nc|ENSG00000145734|A6H8Y1-2|BDP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 640.7587890625 2 640.762223 1279.50989 NaN NaN NaN NaN NaN NaN NaN 170.92 1 166.13 165.63 166.63 -4.7898 0 0 0 0.22632 1 34721 34721 0.03141 0 1 23957 4618 15727 15733 23723 23723 -0.11868199217701658 KNENMLMY 8 Unmodified _KNENMLMY_ 0 0 0 REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1 REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2617797851562 2 521.738445 1041.46234 0.94194 0.00049145 -0.34857 -0.00018186 0.59337 0.00030958 521.7358137462347 25.561 0.17323 23.913 23.757 23.931 -1.6482 5 4 2 0 0 0 0.93477 1 4468 4468 12.532 0 1 195880 + 23958 25256 15728 15734 23724 23724 -0.05673524951566833 KNERPKSNN 9 Unmodified _KNERPKSNN_ 0 0 0 REV__ENST00000600817.5_1_19:43679971-43690557:-|nuORF REV__ENST00000600817.5_1_19:43679971-43690557:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7803955078125 2 543.786161 1085.55777 NaN NaN NaN NaN NaN NaN NaN 151.88 1 146.65 146.15 147.15 -5.2365 0 0 0 0.23508 1 29443 29443 13.042 0.80181 1 + 23959 19572 15729 15735 23725 23725 0.018412875553167396 KNFFRLAKKYQ 11 Unmodified _KNFFRLAKKYQ_ 0 0 0 REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2384338378906 3 481.613744 1441.8194 NaN NaN NaN NaN NaN NaN NaN 48.027 1 45.077 44.577 45.577 -2.9499 0 0 0 0.22632 1 8785 8785 1.4551 1.4289 1 + 23960 25470 15730 15736 23726 23726 0.11616693922223931 KNFLYFSF 8 Unmodified _KNFLYFSF_ 0 0 0 REV__tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1 REV__tr|U7T2K1|U7T2K1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00479PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2750854492188 2 533.273835 1064.53312 NaN NaN NaN NaN NaN NaN NaN 20.014 1 18.618 18.118 19.118 -1.3966 0 0 0 0.21486 1 3325 3325 12.532 0.29089 1 + 23961 25334 15731 15737 23727 23727 0.0034325941990118736 KNFQPWVY 8 Unmodified _KNFQPWVY_ 0 0 0 ENST00000465976.1_1_7:86827133-86832342:-|nuORF ENST00000465976.1_1_7:86827133-86832342:-|nuORF ENST00000465976.1_1_7:86827133-86832342:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2791748046875 2 541.276909 1080.53927 1.3821 0.00074812 3.5761 0.0019357 4.9583 0.0026838 541.279212395378 25.538 0.27813 23.89 23.722 24 -1.6482 11 7 2 0 0 0 8448 1 4467 4467 3.2813 0.78282 1 408510 23962 10129 15732 15738 23728 23728 0.0022177765142714634 KNFQQVIRF 9 Unmodified _KNFQQVIRF_ 0 0 0 ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000489822.5_1_10:121336540-121356247:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2640991210938 2 590.33529 1178.65603 0.51473 0.00030386 -4.0376 -0.0023836 -3.5229 -0.0020797 590.3324578557069 144.23 0.20349 139.16 139.01 139.21 -5.0671 6 5 2 0 0 0 0.85913 1 27822 27822 6.2058 1.8765 1 4280500 23963 10506 15733 15739 23729 23729 0.07384515871149233 KNFRRDFFILL 11 Unmodified _KNFRRDFFILL_ 0 0 0 nc|ENSG00000170820|P23945-2|FSHR;nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR nc|ENSG00000170820|P23945-2|FSHR nc|ENSG00000170820|P23945-2|FSHR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.262939453125 3 490.285628 1467.83505 NaN NaN NaN NaN NaN NaN NaN 155.46 1 150.17 149.67 150.67 -5.2854 0 0 0 0.22632 1 30154 30154 1.4551 0.047682 1 23964 6098 15734 15740 23730 23730 0.11984980439297033 KNFRTEHY 8 Unmodified _KNFRTEHY_ 0 0 0 C9|p.N277Mfs*21|1|0.37|ENSG00000113600|chr5:39315815-39315815|T/-|frameshift_variant;C9|p.M293Cfs*5|1|0.21|ENSG00000113600|chr5:39311371-39311371|T/-|frameshift_variant;C9|p.L339Ffs*10|1|0.22|ENSG00000113600|chr5:39311231-39311232|-/A|frameshift_variant;ENSG00000113600|ENST00000263408|C9 C9|p.N277Mfs*21|1|0.37|ENSG00000113600|chr5:39315815-39315815|T/-|frameshift_variant C9|p.N277Mfs*21|1|0.37|ENSG00000113600|chr5:39315815-39315815|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7747802734375 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 18.434 1 18.434 17.934 18.934 0 0 0 0 0.18898 1 2966 2966 28.487 1.6032 1 23965 354 15735 15741 23731 23731 -0.012531959850548446 KNFSNDIML 9 Unmodified _KNFSNDIML_ 0 0 0 nc|ENSG00000100450|P20718-2|GZMH;ENSG00000100450|ENST00000216338|GZMH;ENSG00000100453|ENST00000216341|GZMB nc|ENSG00000100450|P20718-2|GZMH nc|ENSG00000100450|P20718-2|GZMH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2611694335938 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 143.42 1 138.39 137.89 138.89 -5.0261 0 0 0 0.23508 1 27649 27649 13.042 1.5478 1 23966 1981 15736 15742 23732 23732 -0.00966207154078802 KNFSNDIML 9 Unmodified _KNFSNDIML_ 0 0 0 nc|ENSG00000100450|P20718-2|GZMH;ENSG00000100450|ENST00000216338|GZMH;ENSG00000100453|ENST00000216341|GZMB nc|ENSG00000100450|P20718-2|GZMH nc|ENSG00000100450|P20718-2|GZMH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.261962890625 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 144.35 1 139.28 138.78 139.78 -5.0671 0 0 0 0.23508 1 27846 27846 8.7454 0.15213 1 23967 1981 15736 15742 23733 23733 -0.00966207154078802 KNFYCPFFMTW 11 Unmodified _KNFYCPFFMTW_ 0 0 0 nc|ENSG00000151812|A4IF30-2|SLC35F4;ENSG00000151812|ENST00000556826|SLC35F4;nc|ENSG00000151812|A4IF30|SLC35F4 nc|ENSG00000151812|A4IF30-2|SLC35F4 nc|ENSG00000151812|A4IF30-2|SLC35F4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3722534179688 2 742.330501 1482.64645 NaN NaN NaN NaN NaN NaN NaN 167.49 1 162.6 162.1 163.1 -4.8916 0 0 0 0.23379 1 32946 32946 5.2969 0.39987 1 23968 4891 15737 15743 23734 23734 -0.07556756520898489 KNGHSWYKIK 10 Unmodified _KNGHSWYKIK_ 0 0 0 REV__ENST00000414307.5_1_2:170441399-170460586:+|nuORF REV__ENST00000414307.5_1_2:170441399-170460586:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7787475585938 2 630.846022 1259.67749 NaN NaN NaN NaN NaN NaN NaN 157.26 1 151.98 151.48 152.48 -5.2712 0 0 0 0.22588 1 30504 30504 8.7454 0 1 + 23969 20164 15738 15744 23735 23735 0.058039008998548525 KNGKKKKKKKK 11 Unmodified _KNGKKKKKKKK_ 0 0 0 REV__ENSG00000255408|ENST00000522353|PCDHA3;REV__ENSG00000239389|ENST00000289272|PCDHA13;REV__ENSG00000251664|ENST00000398631|PCDHA12;REV__ENSG00000243232|ENST00000289269|PCDHAC2;REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10 REV__ENSG00000251664|ENST00000398631|PCDHA12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 671.9738159179688 2 671.972088 1341.92962 NaN NaN NaN NaN NaN NaN NaN 167.73 1 162.78 162.28 163.28 -4.948 0 0 0 0.23698 1 33022 33022 0.30703 0 1 + 23970 19855;19774;19831;19799;19823 15739 15745 23736 23736 0.27233538981226957 KNHEEEMKDL 10 Unmodified _KNHEEEMKDL_ 0 0 0 CON__P13645;ENSG00000186395|ENST00000269576|KRT10 CON__P13645 CON__P13645 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2507019042969 3 424.86781 1271.5816 0.95763 0.00040687 -0.76498 -0.00032502 0.19265 8.1849E-05 424.8674768573001 26.338 0.41244 24.556 24.313 24.726 -1.7821 27 11 3 0 0 0 0.81333 1 4620 4620 17.049 11.646 1 1544400 + 23971 664 15740 15746 23737 23737 -0.043326597931582 KNHFHQSF 8 Unmodified _KNHFHQSF_ 0 0 0 ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451;ZNF451|p.L304Dfs*12|1|0.07|ENSG00000112200|chr6:57141999-57142000|TT/-|frameshift_variant ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2670288085938 2 522.754133 1043.49371 0.16112 8.4228E-05 0.24676 0.000129 0.40789 0.00021322 522.7543138590839 19.675 0.4453 19.675 19.38 19.825 0 24 12 3 0 0 0 0.88497 1 3214 3214 10.074 10.071 1 1789600 23972 2673 15741 15747 23738 23738 -0.026294478109548436 KNHIHAIA 8 Unmodified _KNHIHAIA_ 0 0 0 REV__nc|ENSG00000125107|A5YKK6-2|CNOT1 REV__nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 452.2617492675781 2 452.261594 902.508634 NaN NaN NaN NaN NaN NaN NaN 29.843 1 27.769 27.269 28.269 -2.0743 0 0 0 0.23664 1 5088 5088 3.2813 0 1 + 23973 15802 15742 15748 23739 23739 0.05348044057018342 KNHNEWREFYF 11 Unmodified _KNHNEWREFYF_ 0 0 0 REV__ENSG00000177479|ENST00000356401|ARIH2 REV__ENSG00000177479|ENST00000356401|ARIH2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6770629882812 3 523.91263 1568.71606 NaN NaN NaN NaN NaN NaN NaN 143.12 1 143.12 142.62 143.62 0 0 0 0 0.23698 1 28550 28550 0.45452 0.046251 1 + 23974 18561 15743 15749 23740 23740 -0.04554838256262883 KNHPELLLD 9 Unmodified _KNHPELLLD_ 0 0 0 REV__MYH9|p.Y297H|1|0.08|ENSG00000100345|chr22:36320343-36320343|A/G|missense_variant REV__MYH9|p.Y297H|1|0.08|ENSG00000100345|chr22:36320343-36320343|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 102.58 1 98.262 97.762 98.762 -4.3208 0 0 0 0.23508 1 19641 19641 4.5289 1.2476 1 + 23975 23898 15744 15750 23741 23741 0.0461712798901317 KNHRPARA 8 Unmodified _KNHRPARA_ 0 0 0 nc|ENSG00000104964|Q08117-2|TLE5 nc|ENSG00000104964|Q08117-2|TLE5 nc|ENSG00000104964|Q08117-2|TLE5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1858825683594 3 317.186137 948.53658 NaN NaN NaN NaN NaN NaN NaN 113.67 1 109.21 108.71 109.71 -4.4539 0 0 0 0.21486 1 22394 22394 0.40072 0 1 23976 12269 15745 15751 23742 23742 0.060253670371253065 KNHTCLVF 8 Unmodified _KNHTCLVF_ 0 0 0 nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2;HIPK1|p.N462*|1|0.27|ENSG00000163349|chr1:113955620-113955621|-/T|frameshift_variant;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1 nc|ENSG00000064393|Q9H2X6-2|HIPK2 nc|ENSG00000064393|Q9H2X6-2|HIPK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24951171875 2 481.249837 960.485122 NaN NaN NaN NaN NaN NaN NaN 113.23 1 113.23 112.73 113.73 0 0 0 0 0.2343 1 22262 22262 0.68139 0.55853 1 23977 1333 15746 15752 23743 23743 0.0032986222820454714 KNIFHYLIWFC 11 Unmodified _KNIFHYLIWFC_ 0 0 0 ENST00000527493.5_1_11:89892410-89896902:+|nuORF ENST00000527493.5_1_11:89892410-89896902:+|nuORF ENST00000527493.5_1_11:89892410-89896902:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3828735351562 2 742.381383 1482.74821 NaN NaN NaN NaN NaN NaN NaN 164.95 1 164.95 164.45 165.45 0 0 0 0 0.2367 1 33416 33416 2.9952 0 1 23978 10927 15747 15753 23744 23744 0.026148578931952215 KNIFHYLIWFC 11 Unmodified _KNIFHYLIWFC_ 0 0 0 ENST00000527493.5_1_11:89892410-89896902:+|nuORF ENST00000527493.5_1_11:89892410-89896902:+|nuORF ENST00000527493.5_1_11:89892410-89896902:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3873901367188 2 742.381383 1482.74821 NaN NaN NaN NaN NaN NaN NaN 158.3 1 153.02 152.52 153.52 -5.2748 0 0 0 0.2367 1 30721 30721 2.9952 0 1 23979 10927 15747 15753 23745 23745 0.026148578931952215 KNIFHYLIWFC 11 Unmodified _KNIFHYLIWFC_ 0 0 0 ENST00000527493.5_1_11:89892410-89896902:+|nuORF ENST00000527493.5_1_11:89892410-89896902:+|nuORF ENST00000527493.5_1_11:89892410-89896902:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3843383789062 2 742.381383 1482.74821 NaN NaN NaN NaN NaN NaN NaN 169.4 1 164.47 163.97 164.97 -4.9295 0 0 0 0.22943 1 33445 33445 8.7454 2.5536 1 23980 10927 15747 15753 23746 23746 0.026148578931952215 KNIKYFRFE 9 Unmodified _KNIKYFRFE_ 0 0 0 tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1 tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1 tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7802124023438 2 622.842948 1243.67134 0.39665 0.00024705 1.9211 0.0011966 2.3178 0.0014436 622.8456845712027 126.89 0.16844 126.89 126.78 126.95 0 6 4 2 0 0 0 0.82765 1 25029 25029 9.3831 2.2814 1 1293500 23981 26194 15748 15754 23747 23747 0.05925382668351631 KNIRQHVEK 9 Unmodified _KNIRQHVEK_ 0 0 0 REV__nc|ENSG00000105479|Q96M63-5|ODAD1 REV__nc|ENSG00000105479|Q96M63-5|ODAD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3348388671875 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 47.593 1 44.724 44.224 45.224 -2.869 0 0 0 0.22251 1 8995 8995 16.942 2.104 1 + 23982 14993 15749 15755 23748 23748 0.08778730240078403 KNKAGDIKTA 10 Unmodified _KNKAGDIKTA_ 0 0 0 ENSG00000124383|ENST00000244230|MPHOSPH10 ENSG00000124383|ENST00000244230|MPHOSPH10 ENSG00000124383|ENST00000244230|MPHOSPH10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.85845947265625 3 349.204862 1044.59276 -0.78385 -0.00027372 0.46124 0.00016107 -0.32261 -0.00011266 349.20498665710016 15.818 0.28347 14.602 14.479 14.762 -1.2159 10 7 2 0 0 0 1.1036 1 2443 2443 19.362 2.249 1 878080 23983 3313 15750 15756 23749 23749 0.07224530363305348 KNKAGDIKTA 10 Unmodified _KNKAGDIKTA_ 0 0 0 ENSG00000124383|ENST00000244230|MPHOSPH10 ENSG00000124383|ENST00000244230|MPHOSPH10 ENSG00000124383|ENST00000244230|MPHOSPH10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 349.204862 1044.59276 -0.4198 -0.0001466 0.32533 0.00011361 -0.094462 -3.2987E-05 349.2048839445481 14.813 0.1783 14.813 14.7 14.878 0 0.13693 -2.9716E-05 NaN 19.362 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 818200 23984 3313 15750 15756 0.07224530363305348 KNKAGDIKTA 10 Unmodified _KNKAGDIKTA_ 0 0 0 ENSG00000124383|ENST00000244230|MPHOSPH10 ENSG00000124383|ENST00000244230|MPHOSPH10 ENSG00000124383|ENST00000244230|MPHOSPH10 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 349.204862 1044.59276 -0.54373 -0.00018987 0.29529 0.00010312 -0.24844 -8.6758E-05 349.20497896167046 15.835 0.27949 14.613 14.503 14.783 -1.2219 -0.062747 -6.1193E-05 NaN 19.362 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 569390 23985 3313 15750 15756 0.07224530363305348 KNKEEYQR 8 Unmodified _KNKEEYQR_ 0 0 0 REV__ENSG00000124831|ENST00000308482|LRRFIP1 REV__ENSG00000124831|ENST00000308482|LRRFIP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7816772460938 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 133.98 1 129.16 128.66 129.66 -4.8175 0 0 0 0.23664 1 25791 25791 3.2813 0.78282 1 + 23986 15798 15751 15757 23750 23750 0.008587693238041538 KNKFLIKKAL 10 Unmodified _KNKFLIKKAL_ 0 0 0 REV__tr|U7T6S1|U7T6S1_FUSNUNfeD-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00178PE=4SV=1 REV__tr|U7T6S1|U7T6S1_FUSNUNfeD-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00178PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 601.8760986328125 2 601.902808 1201.79106 NaN NaN NaN NaN NaN NaN NaN 166.69 1 161.9 161.4 162.4 -4.7898 0 0 0 0.22588 1 33518 33518 1.6526 0 1 + 23987 25454 15752 15758 23751 23751 0.19823996012951284 KNKIYRRVAER 11 Unmodified _KNKIYRRVAER_ 0 0 0 REV__nc|ENSG00000084110|P42357-2|HAL REV__nc|ENSG00000084110|P42357-2|HAL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 716.8909301757812 2 716.928409 1431.84226 NaN NaN NaN NaN NaN NaN NaN 143.87 1 143.87 143.37 144.37 0 0 0 0 0.23528 1 28725 28725 8.1555 3.2585 1 + 23988 14465 15753 15759 23752 23752 0.14361713039693313 KNKNITIIPFG 11 Unmodified _KNKNITIIPFG_ 0 0 0 tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1 tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1 tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7670288085938 2 622.871705 1243.72886 NaN NaN NaN NaN NaN NaN NaN 140.6 1 135.62 135.12 136.12 -4.9877 0 0 0 0.224 1 27062 27062 13.042 7.3106 1 23989 26060 15754 15760 23753 23753 0.11674224873922867 KNKRQKRIVLK 11 Unmodified _KNKRQKRIVLK_ 0 0 0 ENST00000482481.1_1_1:94645377-94645440:-|nuORF ENST00000482481.1_1_1:94645377-94645440:-|nuORF ENST00000482481.1_1_1:94645377-94645440:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 705.9293823242188 2 705.972619 1409.93069 NaN NaN NaN NaN NaN NaN NaN 163.01 1 157.87 157.37 158.37 -5.1438 0 0 0 0.23698 1 31699 31699 1.3295 0 1 23990 10397 15755 15761 23754 23754 0.24211753350141407 KNKTYLQKK 9 Unmodified _KNKTYLQKK_ 0 0 0 REV__tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 REV__tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3355712890625 2 575.850773 1149.68699 0.29702 0.00017104 -2.372 -0.0013659 -2.075 -0.0011949 575.8519539839514 146.53 0.14072 146.53 146.43 146.57 0 5 3 2 0 0 0 0.86627 1 29297 29297 5.7319 0.43497 1 1460500 + 23991 24850 15756 15762 23755 23755 0.11813669185426079 KNKVIGKTFPL 11 Unmodified _KNKVIGKTFPL_ 0 0 0 ENST00000508914.1_1_4:120473609-120484125:-|nuORF ENST00000508914.1_1_4:120473609-120484125:-|nuORF ENST00000508914.1_1_4:120473609-120484125:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7793579101562 2 622.889898 1243.76524 NaN NaN NaN NaN NaN NaN NaN 140.77 1 135.78 135.28 136.28 -4.9877 0 0 0 0.23324 1 27098 27098 5.7319 0 1 23992 10722 15757 15763 23756 23756 0.15311101770635105 KNLAIPLVLHR 11 Unmodified _KNLAIPLVLHR_ 0 0 0 REV__nc|ENSG00000138614|Q96SY0-4|INTS14 REV__nc|ENSG00000138614|Q96SY0-4|INTS14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2365417480469 3 425.274952 1272.80303 NaN NaN NaN NaN NaN NaN NaN 154.25 1 148.98 148.48 149.48 -5.2669 0 0 0 0.23698 1 29907 29907 0.45452 0.21867 1 + 23993 16467 15758 15764 23757 23757 0.1775361275610976 KNLFSVDMII 10 Unmodified _KNLFSVDMII_ 0 0 0 tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1 tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1 tr|U7STV7|U7STV7_FUSNUGlutamyl-tRNAreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2518920898438 2 590.325742 1178.63693 NaN NaN NaN NaN NaN NaN NaN 164.94 1 160.15 159.65 160.65 -4.7898 0 0 0 0.22588 1 32997 32997 8.7454 1.1365 1 23994 26172 15759 15765 23758 23758 0.054757984652496816 KNLHLSHIFA 10 Unmodified _KNLHLSHIFA_ 0 0 0 REV__ZNF721|p.K468Cfs*27|1|0.05|ENSG00000182903|chr4:443029-443030|-/AGACA|frameshift_variant REV__ZNF721|p.K468Cfs*27|1|0.05|ENSG00000182903|chr4:443029-443030|-/AGACA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2733764648438 2 590.33529 1178.65603 NaN NaN NaN NaN NaN NaN NaN 136.35 1 131.71 131.21 132.21 -4.6399 0 0 0 0.22588 1 26905 26905 6.7232 1.8262 1 + 23995 18809 15760 15766 23759 23759 0.0738451587117197 KNLILKILVS 10 Unmodified _KNLILKILVS_ 0 0 0 nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 570.9258422851562 2 570.889367 1139.76418 NaN NaN NaN NaN NaN NaN NaN 172.24 1 167.45 166.95 167.95 -4.7898 0 0 0 0.22588 1 35077 35077 3.5965 1.9439 1 23996 1116 15761 15767 23760 23760 0.1998888740174607 KNLQGLDPKA 10 Unmodified _KNLQGLDPKA_ 0 0 0 nc|ENSG00000168077|Q6AZY7-2|SCARA3;ENSG00000168077|ENST00000301904|SCARA3 nc|ENSG00000168077|Q6AZY7-2|SCARA3 nc|ENSG00000168077|Q6AZY7-2|SCARA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.8661804199219 3 361.876746 1082.60841 -0.41134 -0.00014886 0.65769 0.000238 0.24634 8.9145E-05 361.87695918815484 17.863 0.24339 16.59 16.452 16.696 -1.2722 9 6 2 0 0 0 1.1138 1 2653 2653 14.405 4.3315 1 469750 23997 5879 15762 15768 23761 23761 0.07040816880316925 KNLQGLDPKA 10 Unmodified _KNLQGLDPKA_ 0 0 0 nc|ENSG00000168077|Q6AZY7-2|SCARA3;ENSG00000168077|ENST00000301904|SCARA3 nc|ENSG00000168077|Q6AZY7-2|SCARA3 nc|ENSG00000168077|Q6AZY7-2|SCARA3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 361.876746 1082.60841 -0.31169 -0.00011279 0.70491 0.00025509 0.39322 0.0001423 361.8770700473213 16.703 0.23716 16.703 16.578 16.816 0 0.066698 -5.389E-05 NaN 14.405 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 659670 23998 5879 15762 15768 0.07040816880316925 KNLQGLDPKA 10 Unmodified _KNLQGLDPKA_ 0 0 0 nc|ENSG00000168077|Q6AZY7-2|SCARA3;ENSG00000168077|ENST00000301904|SCARA3 nc|ENSG00000168077|Q6AZY7-2|SCARA3 nc|ENSG00000168077|Q6AZY7-2|SCARA3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 361.876746 1082.60841 -0.39754 -0.00014386 1.0095 0.00036533 0.61201 0.00022147 361.8769453276206 17.927 0.21303 16.616 16.511 16.725 -1.3109 -0.020735 0.00027683 NaN 14.405 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 291180 23999 5879 15762 15768 0.07040816880316925 KNLVYGTTKK 10 Unmodified _KNLVYGTTKK_ 0 0 0 ENST00000491598.5_1_7:139726040-139754542:-|nuORF;ENSG00000059378|ENST00000263549|PARP12 ENST00000491598.5_1_7:139726040-139754542:-|nuORF ENST00000491598.5_1_7:139726040-139754542:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3241577148438 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 157.77 1 152.5 152 153 -5.2712 0 0 0 0.22588 1 30605 30605 4.897 0.70751 1 24000 1298 15763 15769 23762 23762 0.10169962948521061 KNMLLVMDT 9 Unmodified _KNMLLVMDT_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.279541015625 2 532.77757 1063.54059 0.68023 0.00036241 -0.083523 -4.4499E-05 0.59671 0.00031791 532.7774467834004 22.517 0.83713 21.043 20.34 21.177 -1.4742 29 23 2 0 0 0 0.64382 1 3843 3843 10.074 0.6908 1 420280 24001 2443 15764 15770 23763 23763 0.011359076336702856 KNMLLVMDT 9 Unmodified _KNMLLVMDT_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26171875 2 532.77757 1063.54059 0.27555 0.00014681 0.18836 0.00010035 0.46392 0.00024716 532.7776818242285 22.233 0.87785 20.78 20.562 21.44 -1.4535 31 24 2 0 0 0 0.62102 1 3562 3562 11.64 1.4569 1 487680 24002 2443 15764 15770 23764 23764 0.011359076336702856 KNNFKKRWFCL 11 Unmodified _KNNFKKRWFCL_ 0 0 0 RASA2|p.K624N|1|0.32|ENSG00000155903|chr3:141586691-141586691|G/T|missense_variant RASA2|p.K624N|1|0.32|ENSG00000155903|chr3:141586691-141586691|G/T|missense_variant RASA2|p.K624N|1|0.32|ENSG00000155903|chr3:141586691-141586691|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.402099609375 2 742.403181 1482.79181 NaN NaN NaN NaN NaN NaN NaN 143.29 1 138.63 138.13 139.13 -4.656 0 0 0 0.23634 1 28339 28339 3.2813 0.54611 1 24003 12864 15765 15771 23765 23765 0.06972467390346537 KNNSKFVLE 9 Unmodified _KNNSKFVLE_ 0 0 0 nc|ENSG00000187791|A6NFA0|SPATA31F3 nc|ENSG00000187791|A6NFA0|SPATA31F3 nc|ENSG00000187791|A6NFA0|SPATA31F3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20123291015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 86.181 1 82.231 81.731 82.731 -3.9503 0 0 0 0.23508 1 16401 16401 2.4985 0.21571 1 24004 12527 15766 15772 23766 23766 0.0461712798901317 KNNSKFVLE 9 Unmodified _KNNSKFVLE_ 0 0 0 nc|ENSG00000187791|A6NFA0|SPATA31F3 nc|ENSG00000187791|A6NFA0|SPATA31F3 nc|ENSG00000187791|A6NFA0|SPATA31F3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 86.46 1 82.731 82.231 83.231 -3.7289 0 0 0 0.23508 1 16533 16533 4.5289 0.33936 1 24005 12527 15766 15772 23767 23767 0.0461712798901317 KNPKAKKKVY 10 Unmodified _KNPKAKKKVY_ 0 0 0 REV__SMOC1|p.K398N|1|0.38|ENSG00000198732|chr14:70023350-70023350|G/T|missense_variant REV__SMOC1|p.K398N|1|0.38|ENSG00000198732|chr14:70023350-70023350|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2827758789062 2 602.38224 1202.74993 NaN NaN NaN NaN NaN NaN NaN 157.92 1 153.13 152.63 153.63 -4.7885 0 0 0 0.22588 1 31407 31407 6.7232 3.4419 1 + 24006 24660 15767 15773 23768 23768 0.1566623497344608 KNPKAKKKVY 10 Unmodified _KNPKAKKKVY_ 0 0 0 REV__SMOC1|p.K398N|1|0.38|ENSG00000198732|chr14:70023350-70023350|G/T|missense_variant REV__SMOC1|p.K398N|1|0.38|ENSG00000198732|chr14:70023350-70023350|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2989501953125 2 602.38224 1202.74993 NaN NaN NaN NaN NaN NaN NaN 141.69 1 136.71 136.21 137.21 -4.9877 0 0 0 0.22588 1 27290 27290 6.7232 1.4263 1 + 24007 24660 15767 15773 23769 23769 0.1566623497344608 KNPLQRVGPG 10 Unmodified _KNPLQRVGPG_ 0 0 0 LRRN2|p.P431Qfs*5|3|0.31|ENSG00000170382|chr1:204618701-204618701|G/-|frameshift_variant;ENSG00000170382|ENST00000367177|LRRN2 LRRN2|p.P431Qfs*5|3|0.31|ENSG00000170382|chr1:204618701-204618701|G/-|frameshift_variant LRRN2|p.P431Qfs*5|3|0.31|ENSG00000170382|chr1:204618701-204618701|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2695922851562 2 533.311815 1064.60908 NaN NaN NaN NaN NaN NaN NaN 19.049 1 17.652 17.152 18.152 -1.3966 0 0 0 0.22576 1 3125 3125 14.838 1.3304 1 24008 6066 15768 15774 23770 23770 0.07935656320046292 KNPLQRVGPG 10 Unmodified _KNPLQRVGPG_ 0 0 0 LRRN2|p.P431Qfs*5|3|0.31|ENSG00000170382|chr1:204618701-204618701|G/-|frameshift_variant;ENSG00000170382|ENST00000367177|LRRN2 LRRN2|p.P431Qfs*5|3|0.31|ENSG00000170382|chr1:204618701-204618701|G/-|frameshift_variant LRRN2|p.P431Qfs*5|3|0.31|ENSG00000170382|chr1:204618701-204618701|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2716064453125 2 533.311815 1064.60908 0.18185 9.6984E-05 0.1145 6.1063E-05 0.29635 0.00015805 533.3118556427319 21.301 0.42339 19.916 19.684 20.108 -1.3847 28 11 3 0 0 0 0.70357 1 3380 3380 10.824 1.4408 1 5032700 24009 6066 15768 15774 23771 23771 0.07935656320046292 KNPLTSLVIR 10 Unmodified _KNPLTSLVIR_ 0 0 0 REV__ENSG00000174145|ENST00000309447|NWD2 REV__ENSG00000174145|ENST00000309447|NWD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2104797363281 3 380.908157 1139.70264 -0.2975 -0.00011332 0.23144 8.8158E-05 -0.066057 -2.5162E-05 380.90819270205014 87.569 0.54347 83.842 83.54 84.084 -3.727 20 14 2 0 0 0 0.91149 1 17087 17087 1.3296 0 1 1054900 + 24010 18395 15769 15775 23772 23772 0.13837955702433646 KNPNKLPLQK 10 Unmodified _KNPNKLPLQK_ 0 0 0 REV__CON__Q9TTE1 REV__CON__Q9TTE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2489013671875 2 590.364047 1178.71354 NaN NaN NaN NaN NaN NaN NaN 138.39 1 138.39 137.89 138.89 0 0 0 0 0.22588 1 27473 27473 8.7454 2.0222 1 + + 24011 13560 15770 15776 23773 23773 0.13133358076743207 KNQMYDDYYYY 11 Unmodified _KNQMYDDYYYY_ 0 0 0 nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2728271484375 3 522.546625 1564.61805 0.35709 0.0001866 1.7433 0.00091097 2.1004 0.0010976 522.8827695097432 145 0.13826 140.05 139.93 140.07 -4.9445 5 3 2 0 0 0 0.96216 1 28003 28003 0.45452 0.046251 1 1761600 24012 3915 15771 15777 23774 23774 -0.14167827687106183 KNSGQKGM 8 Unmodified _KNSGQKGM_ 0 0 0 REV__CUL5|p.N565Kfs*3|1|0.32|ENSG00000166266|chr11:108094930-108094931|-/A|frameshift_variant REV__CUL5|p.N565Kfs*3|1|0.32|ENSG00000166266|chr11:108094930-108094931|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24383544921875 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 37.155 1 34.807 34.307 35.307 -2.3479 0 0 0 0.23182 1 6583 6583 0.68139 0.3018 1 + 24013 13617 15772 15778 23775 23775 -0.012835877025963782 KNSNKFTRKKK 11 Unmodified _KNSNKFTRKKK_ 0 0 0 L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|77|3|sense L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|77|3|sense L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|77|3|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2315673828125 3 460.280765 1377.82047 NaN NaN NaN NaN NaN NaN NaN 109.81 1 105.35 104.85 105.85 -4.4518 0 0 0 0.22632 1 21073 21073 0.03141 0 1 24014 12051 15773 15779 23776 23776 0.14666908291110303 KNSPSLGFHG 10 Unmodified _KNSPSLGFHG_ 0 0 0 nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF;ENST00000537318.5_1_11:61546644-61549415:+|nuORF nc|ENSG00000124920|Q9Y2G1-2|MYRF nc|ENSG00000124920|Q9Y2G1-2|MYRF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2666625976562 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 18.916 1 17.281 16.781 17.781 -1.6351 0 0 0 0.22588 1 2825 2825 8.1555 0.8663 1 24015 3338 15774 15780 23777 23777 3.401640651645721E-05 KNTGCFPF 8 Unmodified _KNTGCFPF_ 0 0 0 REV__ENSG00000170790|ENST00000641461|OR10A2 REV__ENSG00000170790|ENST00000641461|OR10A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22540283203125 2 457.215463 912.416374 0.26709 0.00012212 0.53301 0.0002437 0.80009 0.00036582 457.2155506167433 33.954 0.75839 33.954 33.69 34.449 0 41 21 3 0 0 0 0.70344 2 6167 6167;6185 18.135 18.135 1 1991600 + 24016 17841 15775 15781 23778;23779 23778 -0.04333802071505488 KNTGCFPF 8 Unmodified _KNTGCFPF_ 0 0 0 REV__ENSG00000170790|ENST00000641461|OR10A2 REV__ENSG00000170790|ENST00000641461|OR10A2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 457.215463 912.416374 0.26709 0.00012212 0.53301 0.0002437 0.80009 0.00036582 457.2155506167433 33.954 0.75839 33.954 33.69 34.449 0 0.087819 -0.00013228 NaN 18.135 41 21 3 NaN NaN NaN NaN 0 NaN NaN 0 1991600 + 24017 17841 15775 15781 -0.04333802071505488 KNTGCFPF 8 Unmodified _KNTGCFPF_ 0 0 0 REV__ENSG00000170790|ENST00000641461|OR10A2 REV__ENSG00000170790|ENST00000641461|OR10A2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.215463 912.416374 -0.52465 -0.00023988 1.3887 0.00063493 0.86403 0.00039505 457.2159907573193 36.245 0.46063 33.852 33.628 34.089 -2.3938 -0.014556 0.00065018 NaN 18.135 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2029400 + 24018 17841 15775 15781 -0.04333802071505488 KNTGCFPF 8 Unmodified _KNTGCFPF_ 0 0 0 REV__ENSG00000170790|ENST00000641461|OR10A2 REV__ENSG00000170790|ENST00000641461|OR10A2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 457.215463 912.416374 0.077982 3.5655E-05 0.71069 0.00032494 0.78868 0.00036059 457.2155968553877 36.161 0.69495 33.813 33.616 34.311 -2.3479 -0.052889 3.0205E-05 NaN 18.135 40 19 4 NaN NaN NaN NaN 0 NaN NaN 0 3369300 + 24019 17841 15775 15781 -0.04333802071505488 KNTGCFPF 8 Unmodified _KNTGCFPF_ 0 0 0 REV__ENSG00000170790|ENST00000641461|OR10A2 REV__ENSG00000170790|ENST00000641461|OR10A2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 457.215463 912.416374 0.27082 0.00012382 0.26443 0.0001209 0.53525 0.00024472 457.215531026529 36.122 0.63073 33.846 33.705 34.336 -2.2766 -0.020374 -0.00037787 NaN 18.135 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1192000 + 24020 17841 15775 15781 -0.04333802071505488 KNTKGTELMS 10 Unmodified _KNTKGTELMS_ 0 0 0 REV__ENSG00000080200|ENST00000389622|CRYBG3 REV__ENSG00000080200|ENST00000389622|CRYBG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 555.2937622070312 2 554.786981 1107.55941 0.14786 8.2032E-05 0.19803 0.00010986 0.34589 0.0001919 554.7862682685268 150.73 0.3876 145.53 145.34 145.73 -5.1994 13 10 2 0 0 0 0.68961 1 29230 29230 12.241 0.60036 1 1640100 + 24021 14406 15776 15782 23780 23780 0.00993160529060333 KNTKGTELMS 10 Unmodified _KNTKGTELMS_ 0 0 0 REV__ENSG00000080200|ENST00000389622|CRYBG3 REV__ENSG00000080200|ENST00000389622|CRYBG3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 554.786981 1107.55941 0.31499 0.00017475 -0.21392 -0.00011868 0.10107 5.6073E-05 554.7865096787489 145.38 0.20583 145.38 145.24 145.44 0 -0.07384 -0.00016637 NaN 12.241 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1882600 + 24022 14406 15776 15782 0.00993160529060333 KNTKGTELMS 10 Unmodified _KNTKGTELMS_ 0 0 0 REV__ENSG00000080200|ENST00000389622|CRYBG3 REV__ENSG00000080200|ENST00000389622|CRYBG3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 554.786981 1107.55941 0.14786 8.2032E-05 0.19803 0.00010986 0.34589 0.0001919 554.7862682685268 150.73 0.3876 145.53 145.34 145.73 -5.1994 0.07384 0.00029071 NaN 12.241 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1640100 + 24023 14406 15776 15782 0.00993160529060333 KNTKNLLKK 9 Unmodified _KNTKNLLKK_ 0 0 0 REV__ENST00000586549.1_2_19:10753696-10754058:+|nuORF REV__ENST00000586549.1_2_19:10753696-10754058:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7921752929688 2 543.853316 1085.69208 NaN NaN NaN NaN NaN NaN NaN 148.44 1 143.28 142.78 143.78 -5.1557 0 0 0 0.23508 1 28739 28739 6.7232 0.51738 1 + 24024 15959 15777 15783 23781 23781 0.152659730480309 KNVKEYVRWMM 11 Unmodified _KNVKEYVRWMM_ 0 0 0 REEP3|p.F45Lfs*6|1|0.31|ENSG00000165476|chr10:63594803-63594803|T/-|frameshift_variant;nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3 REEP3|p.F45Lfs*6|1|0.31|ENSG00000165476|chr10:63594803-63594803|T/-|frameshift_variant REEP3|p.F45Lfs*6|1|0.31|ENSG00000165476|chr10:63594803-63594803|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3812255859375 2 742.381057 1482.74756 NaN NaN NaN NaN NaN NaN NaN 153.33 1 153.33 152.83 153.83 0 0 0 0 0.23698 1 30719 30719 2.7352 1.4057 1 24025 5629 15778 15784 23782 23782 0.025496951818013258 KNWSKKWYYRY 11 Unmodified _KNWSKKWYYRY_ 0 0 0 REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1 REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.39111328125 2 811.417343 1620.82013 NaN NaN NaN NaN NaN NaN NaN 172.78 1 167.89 167.39 168.39 -4.8977 0 0 0 0.23698 1 34283 34283 2.2828 2.0138 1 + 24026 24968 15779 15785 23783 23783 0.03455488571262322 KNWSKKWYYRY 11 Unmodified _KNWSKKWYYRY_ 0 0 0 REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1 REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.273193359375 3 541.280654 1620.82013 NaN NaN NaN NaN NaN NaN NaN 163.49 1 158.42 157.92 158.92 -5.0648 0 0 0 0.22632 1 31814 31814 0.50596 0.41111 1 + 24027 24968 15779 15785 23784 23784 0.03455488571262322 KNYFFYYYFES 11 Unmodified _KNYFFYYYFES_ 0 0 0 ENST00000265138.3_1_5:90665956-90666349:-|nuORF ENST00000265138.3_1_5:90665956-90666349:-|nuORF ENST00000265138.3_1_5:90665956-90666349:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.389892578125 2 785.848093 1569.68163 NaN NaN NaN NaN NaN NaN NaN 139.34 1 134.49 133.99 134.99 -4.8492 0 0 0 0.23698 1 26859 26859 1.3295 0.13619 1 24028 8352 15780 15786 23785 23785 -0.08042099187719032 KNYKDIAK 8 Unmodified _KNYKDIAK_ 0 0 0 REV__tr|U7SFZ5|U7SFZ5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02295PE=4SV=1 REV__tr|U7SFZ5|U7SFZ5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02295PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2641296386719 2 490.282192 978.549831 0.055124 2.7026E-05 0.59948 0.00029391 0.6546 0.00032094 490.28246720567864 35.927 0.45409 33.65 33.386 33.84 -2.2766 22 12 2 0 0 0 0.71876 1 6288 6288 11.64 0.81637 1 1667400 + 24029 24867 15781 15787 23786 23786 0.059697603058339155 KNYLVINQAKA 11 Unmodified _KNYLVINQAKA_ 0 0 0 REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1 REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7791748046875 2 631.366787 1260.71902 0.44302 0.00027971 -2.9929 -0.0018896 -2.5498 -0.0016099 632.3695802485632 133.74 0.17992 128.92 128.84 129.02 -4.8175 7 4 3 0 0 0 0.96036 1 25733 25733 4.897 0.36815 1 581910 + 24030 25082 15782 15788 23787 23787 0.09909036868543808 KNYMWLKMQLE 11 Unmodified _KNYMWLKMQLE_ 0 0 0 REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3727416992188 2 742.37544 1482.73633 NaN NaN NaN NaN NaN NaN NaN 145.89 1 140.89 140.39 141.39 -5 0 0 0 0.23698 1 28220 28220 2.7352 1.4057 1 + 24031 15426 15783 15789 23788 23788 0.014268730877120106 KNYPPNDPV 9 Unmodified _KNYPPNDPV_ 0 0 0 REV__ENSG00000236444|ENST00000635918|UBE2L5 REV__ENSG00000236444|ENST00000635918|UBE2L5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2615356445312 2 522.261456 1042.50836 -0.60221 -0.00031451 0.85183 0.00044488 0.24962 0.00013037 522.2617970571935 110.15 0.79762 105.77 105.44 106.24 -4.3776 35 22 2 0 0 0 0.10297 1 21736 21736 54.774 1.198 1 3334100 + 24032 19767 15784 15790 23789 23789 -0.011194204534831442 KPAHMAKGASP 11 Unmodified _KPAHMAKGASP_ 0 0 0 REV__MKI67|p.T1784A|1|0.26|ENSG00000148773|chr10:128106490-128106490|T/C|missense_variant REV__MKI67|p.T1784A|1|0.26|ENSG00000148773|chr10:128106490-128106490|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7852172851562 2 547.792401 1093.57025 NaN NaN NaN NaN NaN NaN NaN 148.63 1 143.47 142.97 143.97 -5.1557 0 0 0 0.22632 1 28779 28779 0.172 0 1 + 24033 23859 15785 15791 23790 23790 0.02720607694004684 KPAKILPVG 9 Unmodified _KPAKILPVG_ 0 0 0 REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1 REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.18536376953125 3 308.207656 921.601138 NaN NaN NaN NaN NaN NaN NaN 135.17 1 130.53 130.03 131.03 -4.6399 0 0 0 0.23508 1 26660 26660 0.23584 0.23584 1 + 24034 14423 15786 15792 23791 23791 0.13720129070577514 KPAKIRKLK 9 Unmodified _KPAKIRKLK_ 0 0 0 ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2657470703125 2 541.382043 1080.74953 NaN NaN NaN NaN NaN NaN NaN 91.205 1 87.28 86.78 87.78 -3.9251 0 0 0 0.23508 1 17851 17851 1.8442 0.19162 1 24035 7735 15787 15793 23792 23792 0.21238860044263674 KPAKSTES 8 Unmodified _KPAKSTES_ 0 0 0 REV__RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant REV__RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.240234375 2 424.229625 846.444697 -0.2263 -9.6003E-05 0.42515 0.00018036 0.19885 8.4357E-05 424.2297591100684 18.322 0.4495 17.011 16.795 17.245 -1.3109 32 12 4 0 0 0 8448 1 2944 2944 0.0082765 0.0082765 1 6922400 + 24036 17140 15788 15794 23793 23793 0.015332191094216796 KPALRPLPLLR 11 Unmodified _KPALRPLPLLR_ 0 0 0 REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2539367675781 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 160.42 1 160.42 159.92 160.92 0 0 0 0 0.23698 1 32215 32215 0.40827 0.24894 1 + 24037 19301 15789 15795 23794 23794 0.21390489652821998 KPALRPLPLLR 11 Unmodified _KPALRPLPLLR_ 0 0 0 REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2554016113281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 164.48 1 159.69 159.19 160.19 -4.7898 0 0 0 0.23698 1 32874 32874 0.36667 0.20735 1 + 24038 19301 15789 15795 23795 23795 0.21390489652821998 KPALRPLPLLR 11 Unmodified _KPALRPLPLLR_ 0 0 0 REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2431640625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 170.72 1 165.81 165.31 166.31 -4.9149 0 0 0 0.22632 1 33769 33769 0.03141 0 1 + 24039 19301 15789 15795 23796 23796 0.21390489652821998 KPALRPLPLLR 11 Unmodified _KPALRPLPLLR_ 0 0 0 REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2431640625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 170.74 1 165.82 165.32 166.32 -4.9149 0 0 0 0.23698 1 33771 33771 0.36667 0.20735 1 + 24040 19301 15789 15795 23797 23797 0.21390489652821998 KPAPKMTRD 9 Unmodified _KPAPKMTRD_ 0 0 0 COBLL1|p.L945Cfs*12|1|0.35|ENSG00000082438|chr2:164694786-164694786|A/-|frameshift_variant;ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1 COBLL1|p.L945Cfs*12|1|0.35|ENSG00000082438|chr2:164694786-164694786|A/-|frameshift_variant COBLL1|p.L945Cfs*12|1|0.35|ENSG00000082438|chr2:164694786-164694786|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2779541015625 2 522.286951 1042.55935 NaN NaN NaN NaN NaN NaN NaN 65.024 1 65.024 64.524 65.524 0 0 0 0 0.23508 1 12527 12527 6.2058 1.4498 1 24041 606 15790 15796 23798 23798 0.03977205319733912 KPCWARQGP 9 Unmodified _KPCWARQGP_ 0 0 0 MAN2C1|p.V752Cfs*60|1|0.43|ENSG00000140400|chr15:75358611-75358611|C/-|frameshift_variant MAN2C1|p.V752Cfs*60|1|0.43|ENSG00000140400|chr15:75358611-75358611|C/-|frameshift_variant MAN2C1|p.V752Cfs*60|1|0.43|ENSG00000140400|chr15:75358611-75358611|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2659301757812 2 521.766186 1041.51782 -1.5386 -0.00080277 0.12827 6.6929E-05 -1.4103 -0.00073584 521.7663293806626 15.443 3.2314 14.09 13.507 16.739 -1.3534 185 92 4 0 0 0 0.74257 1 2503 2503 4.3292 0.38484 1 13595000 24042 12107 15791 15797 23799 23799 -0.0012793064895504358 KPEKLTEGFC 10 Unmodified _KPEKLTEGFC_ 0 0 0 REV__ENST00000582590.1_1_17:26731487-26733159:-|nuORF REV__ENST00000582590.1_1_17:26731487-26733159:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.325927734375 2 576.291899 1150.56925 NaN NaN NaN NaN NaN NaN NaN 162.1 1 157.31 156.81 157.81 -4.7898 0 0 0 0.22588 1 32242 32242 8.7454 2.5396 1 + 24043 14350 15792 15798 23800 23800 -1.6514655499122455E-05 KPEKRARPAV 10 Unmodified _KPEKRARPAV_ 0 0 0 REV__INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant REV__INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3263549804688 2 576.354014 1150.69348 NaN NaN NaN NaN NaN NaN NaN 165.65 1 160.67 160.17 161.17 -4.9811 0 0 0 0.22588 1 32395 32395 10.151 0.76745 1 + 24044 19493 15793 15799 23801 23801 0.1241560713679064 KPEKTINRPP 10 Unmodified _KPEKTINRPP_ 0 0 0 REV__ENSG00000177025|ENST00000314391|C19orf18 REV__ENSG00000177025|ENST00000314391|C19orf18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2759399414062 2 590.345855 1178.67716 0.35447 0.00020926 4.053 0.0023926 4.4074 0.0026019 590.3488810006593 156.91 0.16861 156.91 156.79 156.96 0 6 4 2 0 0 0 0.70381 1 31482 31482 10.8 0 1 2513800 + 24045 18534 15794 15800 23802 23802 0.09496481180030969 KPELKAVAKVP 11 Unmodified _KPELKAVAKVP_ 0 0 0 REV__ZNF518B|p.T403Nfs*7|1|0.39|ENSG00000178163|chr4:10445121-10445122|-/T|frameshift_variant REV__ZNF518B|p.T403Nfs*7|1|0.39|ENSG00000178163|chr4:10445121-10445122|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.256591796875 2 590.376623 1178.73869 NaN NaN NaN NaN NaN NaN NaN 110.26 1 106.07 105.57 106.57 -4.1826 0 0 0 0.23698 1 21219 21219 2.7352 0.89096 1 + 24046 18589 15795 15801 23803 23803 0.15647412879320655 KPFEEKAA 8 Unmodified _KPFEEKAA_ 0 0 0 nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10;DOCK10|p.F424Lfs*2|2|0.32|ENSG00000135905|chr2:224865073-224865073|A/-|frameshift_variant;nc|ENSG00000135905|Q96BY6-2|DOCK10;ENST00000492369.5_1_2:225727286-225907091:-|nuORF nc|ENSG00000135905|Q96BY6-3|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2469482421875 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 15.978 1 14.762 14.262 15.262 -1.2159 0 0 0 0.21486 1 2491 2491 2.5775 0 1 24047 3962 15796 15802 23804 23804 0.01858096006139931 KPFIDREWWHR 11 Unmodified _KPFIDREWWHR_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4073486328125 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 153.9 1 153.9 153.4 154.4 0 0 0 0 0.23698 1 30842 30842 1.0715 0 1 24048 1453 15797 15803 23805 23805 0.038417376312963825 KPFIDREWWHR 11 Unmodified _KPFIDREWWHR_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4071044921875 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 55.375 1 52.491 51.991 52.991 -2.8837 0 0 0 0.23698 1 10595 10595 0.30703 0 1 24049 1453 15797 15803 23806 23806 0.038417376312963825 KPFIDREWWHR 11 Unmodified _KPFIDREWWHR_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3925170898438 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 170.02 1 165.23 164.73 165.73 -4.7898 0 0 0 0.22632 1 34481 34481 0.65807 0.072754 1 24050 1453 15797 15803 23807 23807 0.038417376312963825 KPGAFLWL 8 Unmodified _KPGAFLWL_ 0 0 0 REV__ENST00000215829.7_1_22:24951687-24951834:+|nuORF REV__ENST00000215829.7_1_22:24951687-24951834:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2044982910156 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 95.222 1 95.222 94.722 95.722 0 0 0 0 0.21486 1 18654 18654 0.40072 0 1 + 24051 19998 15798 15804 23808 23808 0.06467884490700726 KPGGIWINLGP 11 Unmodified _KPGGIWINLGP_ 0 0 0 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3131103515625 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 147.32 1 147.32 146.82 147.82 0 0 0 0 0.22595 1 29467 29467 11.495 0 1 24052 5075 15799 15805 23809 23809 0.08057997639639325 KPGIGAVILKR 11 Unmodified _KPGIGAVILKR_ 0 0 0 ENSG00000198690|ENST00000362065|FAN1;ENST00000565280.5_1_15:31198658-31229456:+|nuORF;nc|ENSG00000198690|Q9Y2M0-2|FAN1 ENSG00000198690|ENST00000362065|FAN1 ENSG00000198690|ENST00000362065|FAN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3269653320312 2 576.384783 1150.75501 NaN NaN NaN NaN NaN NaN NaN 146.86 1 141.75 141.25 142.25 -5.1108 0 0 0 0.23698 1 28412 28412 2.7352 0.89096 1 24053 7473 15800 15806 23810 23810 0.18566538836080326 KPGKPRKRKKR 11 Unmodified _KPGKPRKRKKR_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.P246Lfs*49|1|0.33|ENSG00000170004|chr17:7893509-7893509|C/-|frameshift_variant;CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.241943359375 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 96.048 1 91.998 91.498 92.498 -4.0496 0 0 0 0.22632 1 18830 18830 0.0059557 0.0059557 1 24054 12455 15801 15807 23811 23811 0.2418630627278162 KPGKPRKRKKR 11 Unmodified _KPGKPRKRKKR_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.P246Lfs*49|1|0.33|ENSG00000170004|chr17:7893509-7893509|C/-|frameshift_variant;CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2311706542969 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 96.655 1 92.557 92.057 93.057 -4.0978 0 0 0 0.22632 1 18958 18958 0.00056442 0 1 24055 12455 15801 15807 23812 23812 0.2418630627278162 KPGKPRKRKKR 11 Unmodified _KPGKPRKRKKR_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.P246Lfs*49|1|0.33|ENSG00000170004|chr17:7893509-7893509|C/-|frameshift_variant;CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2375183105469 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 96.772 1 92.537 92.037 93.037 -4.2348 0 0 0 0.22632 1 18478 18478 0.00056442 0 1 24056 12455 15801 15807 23813 23813 0.2418630627278162 KPGKPRKRKKR 11 Unmodified _KPGKPRKRKKR_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.P246Lfs*49|1|0.33|ENSG00000170004|chr17:7893509-7893509|C/-|frameshift_variant;CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23175048828125 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 96.985 1 92.75 92.25 93.25 -4.2348 0 0 0 0.22632 1 18520 18520 0.00056442 0.00056442 1 24057 12455 15801 15807 23814 23814 0.2418630627278162 KPGKPRKRKKR 11 Unmodified _KPGKPRKRKKR_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.P246Lfs*49|1|0.33|ENSG00000170004|chr17:7893509-7893509|C/-|frameshift_variant;CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2403869628906 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 97.385 1 93.15 92.65 93.65 -4.2348 0 0 0 0.22632 1 18602 18602 0.0059557 0 1 24058 12455 15801 15807 23815 23815 0.2418630627278162 KPGKPRKRKKR 11 Unmodified _KPGKPRKRKKR_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.P246Lfs*49|1|0.33|ENSG00000170004|chr17:7893509-7893509|C/-|frameshift_variant;CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23199462890625 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 96.719 1 92.8 92.3 93.3 -3.9194 0 0 0 0.22632 1 18561 18561 0.00056442 0.00056442 1 24059 12455 15801 15807 23816 23816 0.2418630627278162 KPGKPRKRKKR 11 Unmodified _KPGKPRKRKKR_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.P246Lfs*49|1|0.33|ENSG00000170004|chr17:7893509-7893509|C/-|frameshift_variant;CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23199462890625 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 96.739 1 92.82 92.32 93.32 -3.9194 0 0 0 0.23698 1 18565 18565 0.08335 0.08335 1 24060 12455 15801 15807 23817 23817 0.2418630627278162 KPGMIKRIL 9 Unmodified _KPGMIKRIL_ 0 0 0 REV__ENST00000366518.4_2_1:245849214-245849250:+|nuORF REV__ENST00000366518.4_2_1:245849214-245849250:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.5516357421875 3 352.563445 1054.66851 -0.35927 -0.00012666 0.28919 0.00010196 -0.070072 -2.4705E-05 352.56350047411075 68 1.4447 64.673 63.971 65.415 -3.3268 86 41 3 0 0 0 0.5428 1 12815 12815 4.897 4.8237 1 2846200 + 24061 20898 15802 15808 23818 23818 0.14335836009854575 KPGPPGDFGPP 11 Unmodified _KPGPPGDFGPP_ 0 0 0 REV__ENSG00000081052|ENST00000396625|COL4A4 REV__ENSG00000081052|ENST00000396625|COL4A4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.274169921875 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 13.978 1 13.978 13.478 14.478 0 0 0 0 0.2367 1 2053 2053 2.9952 0.69251 1 + 24062 14424 15803 15809 23819 23819 -0.0005883007381726202 KPGQFVFKG 9 Unmodified _KPGQFVFKG_ 0 0 0 nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2 nc|ENSG00000007202|Q14667-2|BLTP2 nc|ENSG00000007202|Q14667-2|BLTP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.1167907714844 3 336.527277 1006.56 NaN NaN NaN NaN NaN NaN NaN 14.679 1 13.565 13.065 14.065 -1.1142 0 0 0 0.23508 1 2216 2216 1.0715 0 1 24063 1017 15804 15810 23820 23820 0.05698368031096379 KPGQPGPLGE 10 Unmodified _KPGQPGPLGE_ 0 0 0 REV__nc|ENSG00000169031|Q01955-5|COL4A3 REV__nc|ENSG00000169031|Q01955-5|COL4A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2652587890625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 92.77 1 88.926 88.426 89.426 -3.844 0 0 0 0.22588 1 17779 17779 9.3831 1.473 1 + 24064 18070 15805 15811 23821 23821 0.023328834091330464 KPGRHSVRIT 10 Unmodified _KPGRHSVRIT_ 0 0 0 ENST00000585917.5_1_19:28284461-28284521:+|nuORF ENST00000585917.5_1_19:28284461-28284521:+|nuORF ENST00000585917.5_1_19:28284461-28284521:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3154296875 2 575.843813 1149.67307 0.3987 0.00022959 -1.1065 -0.00063718 -0.70781 -0.00040759 575.8430280591883 154.83 2.5682 149.58 147.54 150.11 -5.2527 156 72 3 0 0 0 0.75868 1 29752 29752 2.9952 0 1 6641300 24065 11540 15806 15812 23822 23822 0.10422436476960684 KPGYEPASL 9 Unmodified _KPGYEPASL_ 0 0 0 REV__TBC1D14|p.L519*|1|0.21|ENSG00000132405|chr4:7010689-7010689|T/-|frameshift_variant REV__TBC1D14|p.L519*|1|0.21|ENSG00000132405|chr4:7010689-7010689|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2525939941406 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 139 1 134.05 133.55 134.55 -4.952 0 0 0 0.21065 1 26738 26738 20.454 9.6297 1 + 24066 16115 15807 15813 23823 23823 0.00982078660570096 KPHLLKLRF 9 Unmodified _KPHLLKLRF_ 0 0 0 REV__ENSG00000188897|ENST00000696174|unknown REV__ENSG00000188897|ENST00000696174|unknown MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32666015625 2 576.374218 1150.73388 NaN NaN NaN NaN NaN NaN NaN 145.26 1 140.19 139.69 140.69 -5.0671 0 0 0 0.23508 1 28061 28061 3.5965 0 1 + 24067 19178 15808 15814 23824 23824 0.16454573527221328 KPHLLKLRF 9 Unmodified _KPHLLKLRF_ 0 0 0 REV__ENSG00000188897|ENST00000696174|unknown REV__ENSG00000188897|ENST00000696174|unknown MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33740234375 2 576.374218 1150.73388 NaN NaN NaN NaN NaN NaN NaN 145.49 1 140.54 140.04 141.04 -4.9445 0 0 0 0.23508 1 28131 28131 3.9444 0.3479 1 + 24068 19178 15808 15814 23825 23825 0.16454573527221328 KPHLQYQLKWK 11 Unmodified _KPHLQYQLKWK_ 0 0 0 ENST00000382990.1_1_16:281340-281454:+|nuORF ENST00000382990.1_1_16:281340-281454:+|nuORF ENST00000382990.1_1_16:281340-281454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2685852050781 3 490.285628 1467.83505 NaN NaN NaN NaN NaN NaN NaN 121.14 1 121.14 120.64 121.64 0 0 0 0 0.22632 1 23878 23878 0.172 0 1 24069 9346 15809 15815 23826 23826 0.11984980439251558 KPIGEWEYYDK 11 Unmodified _KPIGEWEYYDK_ 0 0 0 tr|U7SJ44|U7SJ44_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02085PE=4SV=1 tr|U7SJ44|U7SJ44_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02085PE=4SV=1 tr|U7SJ44|U7SJ44_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02085PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 476.8651428222656 3 476.566237 1426.67688 NaN NaN NaN NaN NaN NaN NaN 13.704 1 12.531 12.031 13.031 -1.173 0 0 0 0.23698 1 1802 1802 1.2148 0 1 24070 25933 15810 15816 23827 23827 -0.01938983330501287 KPIHLDFPK 9 Unmodified _KPIHLDFPK_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7929077148438 2 547.821484 1093.62842 NaN NaN NaN NaN NaN NaN NaN 149.21 1 144.01 143.51 144.51 -5.1994 0 0 0 0.23508 1 28902 28902 9.3831 0 1 + 24071 13287 15811 15817 23828 23828 0.08534612610924341 KPILKLKRAL 10 Unmodified _KPILKLKRAL_ 0 0 0 REV__NDC80|p.M480Wfs*7|2|0.3|ENSG00000080986|chr18:2601453-2601453|A/-|frameshift_variant REV__NDC80|p.M480Wfs*7|2|0.3|ENSG00000080986|chr18:2601453-2601453|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2645874023438 2 590.418626 1178.8227 NaN NaN NaN NaN NaN NaN NaN 163.41 1 158.62 158.12 159.12 -4.7898 0 0 0 0.22588 1 32572 32572 0.40072 0 1 + 24072 14422 15812 15818 23829 23829 0.24043988766902658 KPIPANQELL 10 Unmodified _KPIPANQELL_ 0 0 0 ENST00000481163.1_1_6:106546960-106547465:+|nuORF;nc|ENSG00000057657|O75626-3|PRDM1;nc|ENSG00000057657|O75626-2|PRDM1;PRDM1|p.Y792Vfs*28|1|0.08|ENSG00000057657|chr6:106107382-106107386|TATGA/-|frameshift_variant;ENSG00000057657|ENST00000369096|PRDM1 ENST00000481163.1_1_6:106546960-106547465:+|nuORF ENST00000481163.1_1_6:106546960-106547465:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2167663574219 3 374.888763 1121.64446 -0.91815 -0.00034421 0.44299 0.00016607 -0.47517 -0.00017813 374.8888672222445 24.69 0.44187 22.837 22.642 23.084 -1.8534 23 12 3 0 0 0 0.53029 1 4055 4055 0.043787 0 1 980280 24073 1286 15813 15819 23830 23830 0.08850274057181196 KPIQMGQQN 9 Unmodified _KPIQMGQQN_ 0 0 0 ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2667846679688 2 522.268758 1042.52296 NaN NaN NaN NaN NaN NaN NaN 21.896 1 20.175 19.675 20.675 -1.7211 0 0 0 0.19649 1 3450 3450 0.12781 0 1 24074 2702 15814 15820 23831 23831 0.003403284230216741 KPIRLVQDL 9 Unmodified _KPIRLVQDL_ 0 0 0 ENSG00000100982|ENST00000372409|PCIF1 ENSG00000100982|ENST00000372409|PCIF1 ENSG00000100982|ENST00000372409|PCIF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2784423828125 2 541.340041 1080.66553 0.15497 8.3889E-05 -0.61279 -0.00033173 -0.45783 -0.00024784 541.3396617923 75.361 0.96808 71.946 71.471 72.439 -3.4151 61 27 3 0 0 0 0.62921 1 14660 14660 13.042 0 1 4451900 24075 2028 15815 15821 23832 23832 0.1284228415670441 KPIRSLSRWP 10 Unmodified _KPIRSLSRWP_ 0 0 0 REV__ENSG00000189045|ENST00000601380|ANKDD1B REV__ENSG00000189045|ENST00000601380|ANKDD1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 413.9154357910156 3 413.915535 1238.72478 NaN NaN NaN NaN NaN NaN NaN 9.9483 1 8.8819 8.3819 9.3819 -1.0664 0 0 0 0.22588 1 1047 1047 0.15932 0 1 + 24076 19187 15816 15822 23833 23833 0.1149618017091143 KPIVLKRIVAH 11 Unmodified _KPIVLKRIVAH_ 0 0 0 ENST00000531401.5_1_11:64850926-64851618:-|nuORF;ENSG00000146670|ENST00000275517|CDCA5 ENST00000531401.5_1_11:64850926-64851618:-|nuORF ENST00000531401.5_1_11:64850926-64851618:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2498779296875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 28.756 1 28.756 28.256 29.256 0 0 0 0 0.22632 1 5118 5118 0.094841 0.094841 1 24077 4665 15817 15823 23834 23834 0.21390489652844735 KPIVLKRIVAH 11 Unmodified _KPIVLKRIVAH_ 0 0 0 ENST00000531401.5_1_11:64850926-64851618:-|nuORF;ENSG00000146670|ENST00000275517|CDCA5 ENST00000531401.5_1_11:64850926-64851618:-|nuORF ENST00000531401.5_1_11:64850926-64851618:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2534484863281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 112.84 1 108.39 107.89 108.89 -4.4539 0 0 0 0.23698 1 22237 22237 0.40827 0.24894 1 24078 4665 15817 15823 23835 23835 0.21390489652844735 KPIVLKRIVAH 11 Unmodified _KPIVLKRIVAH_ 0 0 0 ENST00000531401.5_1_11:64850926-64851618:-|nuORF;ENSG00000146670|ENST00000275517|CDCA5 ENST00000531401.5_1_11:64850926-64851618:-|nuORF ENST00000531401.5_1_11:64850926-64851618:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2461853027344 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 38.793 1 36.388 35.888 36.888 -2.4049 0 0 0 0.22632 1 6912 6912 0.094841 0.094841 1 24079 4665 15817 15823 23836 23836 0.21390489652844735 KPIYLKSI 8 Unmodified _KPIYLKSI_ 0 0 0 REV__ENSG00000135976|ENST00000420699|ANKRD36 REV__ENSG00000135976|ENST00000420699|ANKRD36 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2537536621094 2 481.307678 960.600803 0.11518 5.5437E-05 -0.12132 -5.8394E-05 -0.0061425 -2.9565E-06 481.307569004625 59.847 0.55777 56.533 56.243 56.801 -3.3139 26 15 2 0 0 0 1.0147 1 11125 11125 5.2307 0 1 2010100 + 24080 16305 15818 15824 23837 23837 0.1189270935069544 KPIYLKSI 8 Unmodified _KPIYLKSI_ 0 0 0 REV__ENSG00000135976|ENST00000420699|ANKRD36 REV__ENSG00000135976|ENST00000420699|ANKRD36 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24407958984375 2 481.307678 960.600803 0.066635 3.2072E-05 -0.077175 -3.7145E-05 -0.010541 -5.0734E-06 481.3076110113744 59.715 0.63428 56.492 56.218 56.852 -3.2237 28 17 2 0 0 0 1.0147 1 11142 11142 2.3027 1.6124 1 1325800 + 24081 16305 15818 15824 23838 23838 0.1189270935069544 KPKFSGVEKIK 11 Unmodified _KPKFSGVEKIK_ 0 0 0 nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2;ENSG00000129467|ENST00000418030|ADCY4;ENST00000568930.1_1_16:50347751-50349413:+|nuORF;ENST00000489501.1_1_5:7802261-7826981:+|nuORF;ENST00000557056.5_1_14:24787624-24791466:-|nuORF;ENSG00000121281|ENST00000673801|ADCY7 nc|ENSG00000078295|Q08462-2|ADCY2 nc|ENSG00000078295|Q08462-2|ADCY2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.8659057617188 2 630.887355 1259.76016 NaN NaN NaN NaN NaN NaN NaN 171.3 1 171.3 170.8 171.8 0 0 0 0 0.22632 1 35282 35282 0.2986 0 1 24082 1576 15819 15825 23839 23839 0.1406679790804901 KPKISAHR 8 Unmodified _KPKISAHR_ 0 0 0 ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1700439453125 3 312.862771 935.566484 -0.59938 -0.00018752 0.47073 0.00014727 -0.12865 -4.025E-05 312.8629686415517 26.863 0.24437 24.941 24.776 25.02 -1.9222 9 6 2 0 0 0 1.0278 1 4473 4473 0.35063 0.35063 1 298620 24083 1258 15820 15826 23840 23840 0.09612305982454927 KPKKAVKIKPH 11 Unmodified _KPKKAVKIKPH_ 0 0 0 ZFAND4|p.L299Wfs*73|1|0.08|ENSG00000172671|chr10:45626927-45626927|A/-|frameshift_variant;ENSG00000172671|ENST00000344646|ZFAND4 ZFAND4|p.L299Wfs*73|1|0.08|ENSG00000172671|chr10:45626927-45626927|A/-|frameshift_variant ZFAND4|p.L299Wfs*73|1|0.08|ENSG00000172671|chr10:45626927-45626927|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2514953613281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 63.789 1 63.789 63.289 64.289 0 0 0 0 0.23698 1 12272 12272 0.40827 0.24894 1 24084 26597 15821 15827 23841 23841 0.21390489652821998 KPKKKVIIK 9 Unmodified _KPKKKVIIK_ 0 0 0 REV__ENSG00000145723|ENST00000399004|GIN1 REV__ENSG00000145723|ENST00000399004|GIN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.258544921875 2 541.394619 1080.77469 NaN NaN NaN NaN NaN NaN NaN 122.34 1 122.34 121.84 122.84 0 0 0 0 0.23508 1 24117 24117 0.52476 0.52476 1 + 24085 16849 15822 15828 23842 23842 0.23752914846841122 KPKKLHFY 8 Unmodified _KPKKLHFY_ 0 0 0 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 REV__nc|ENSG00000188596|Q96N23-2|CFAP54 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 354.226806640625 3 354.214922 1059.62294 NaN NaN NaN NaN NaN NaN NaN 12.652 1 11.642 11.142 12.142 -1.0098 0 0 0 0.21486 1 1777 1777 0.40072 0 1 + 24086 19157 15823 15829 23843 23843 0.09550933819127749 KPKLIRQRL 9 Unmodified _KPKLIRQRL_ 0 0 0 REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1 REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3377685546875 2 576.3904 1150.76625 NaN NaN NaN NaN NaN NaN NaN 99.005 1 95.048 94.548 95.548 -3.9564 0 0 0 0.23508 1 19004 19004 2.0598 1.4583 1 + 24087 19048 15824 15830 23844 23844 0.19689360930215116 KPKLKLKII 9 Unmodified _KPKLKLKII_ 0 0 0 nc|ENSG00000055609|Q8NEZ4-3|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;ENSG00000055609|ENST00000262189|KMT2C;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant;KMT2C|p.K1247Nfs*56|1|0.22|ENSG00000055609|chr7:152207400-152207400|T/-|frameshift_variant;ENST00000415664.2_21:10987833-11013471:-|nuORF nc|ENSG00000055609|Q8NEZ4-3|KMT2C nc|ENSG00000055609|Q8NEZ4-3|KMT2C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26416015625 2 540.896995 1079.77944 NaN NaN NaN NaN NaN NaN NaN 31.278 1 29.129 28.629 29.629 -2.1483 0 0 0 0.23508 1 5384 5384 0.52476 0.52476 1 24088 1273 15825 15831 23845 23845 0.24273798989588613 KPKLLLLGY 9 Unmodified _KPKLLLLGY_ 0 0 0 ENST00000301919.8_1_11:105881770-105891784:-|nuORF ENST00000301919.8_1_11:105881770-105891784:-|nuORF ENST00000301919.8_1_11:105881770-105891784:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2615966796875 2 522.844428 1043.6743 0.039366 2.0582E-05 0.17845 9.3304E-05 0.21782 0.00011389 522.8442787181885 56.108 0.35114 56.108 55.87 56.221 0 14 9 2 0 0 0 0.88278 1 10710 10710 2.0598 2.0598 1 727290 24089 8567 15826 15832 23846 23846 0.15421257793195764 KPKLYWAG 8 Unmodified _KPKLYWAG_ 0 0 0 REV__ENSG00000198173|ENST00000358047|FAM47C REV__ENSG00000198173|ENST00000358047|FAM47C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77703857421875 2 481.776545 961.538538 NaN NaN NaN NaN NaN NaN NaN 15.092 1 13.87 13.37 14.37 -1.2219 0 0 0 0.21486 1 2088 2088 2.3027 0 1 + 24090 19395 15827 15833 23847 23847 0.056229830023767136 KPKMAAKKSY 10 Unmodified _KPKMAAKKSY_ 0 0 0 REV__ENSG00000115760|ENST00000421745|BIRC6 REV__ENSG00000115760|ENST00000421745|BIRC6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.336181640625 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 66.866 1 63.757 63.257 64.257 -3.1086 0 0 0 0.22588 1 12962 12962 6.2058 2.2614 1 + 24091 15448 15828 15834 23848 23848 0.08394924422009353 KPKMAAKKSY 10 Unmodified _KPKMAAKKSY_ 0 0 0 REV__ENSG00000115760|ENST00000421745|BIRC6 REV__ENSG00000115760|ENST00000421745|BIRC6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3236083984375 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 30.831 1 28.805 28.305 29.305 -2.0264 0 0 0 0.22588 1 5300 5300 6.2058 1.4498 1 + 24092 15448 15828 15834 23849 23849 0.08394924422009353 KPKNINKSKTC 11 Unmodified _KPKNINKSKTC_ 0 0 0 nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6 nc|ENSG00000141448|Q92908-2|GATA6 nc|ENSG00000141448|Q92908-2|GATA6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7698974609375 2 630.858272 1259.70199 NaN NaN NaN NaN NaN NaN NaN 115.25 1 110.78 110.28 111.28 -4.4726 0 0 0 0.23379 1 22716 22716 5.2969 0.76802 1 24093 4368 15829 15835 23850 23850 0.08252792991106617 KPKPKRPLLIA 11 Unmodified _KPKPKRPLLIA_ 0 0 0 REV__ENST00000470366.5_1_9:125033285-125042754:+|nuORF REV__ENST00000470366.5_1_9:125033285-125042754:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7517700195312 2 630.929357 1259.84416 NaN NaN NaN NaN NaN NaN NaN 162.55 1 162.55 162.05 163.05 0 0 0 0 0.23698 1 32687 32687 1.1933 0 1 + 24094 22029 15830 15836 23851 23851 0.22463373795608277 KPKQHTDEI 9 Unmodified _KPKQHTDEI_ 0 0 0 REV__ENST00000476189.1_1_6:159209469-159239197:-|nuORF REV__ENST00000476189.1_1_6:159209469-159239197:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7935791015625 2 548.293288 1094.57202 0.29656 0.0001626 2.3369 0.0012813 2.6335 0.0014439 548.7974007368543 102.92 0.1703 98.597 98.466 98.637 -4.3208 5 4 2 0 0 0 0.73268 1 19694 19694 24.021 2.2739 1 577870 + 24095 22106 15831 15837 23852 23852 0.028519399836113735 KPKRLYGVKR 10 Unmodified _KPKRLYGVKR_ 0 0 0 REV__ENSG00000169047|ENST00000305123|IRS1 REV__ENSG00000169047|ENST00000305123|IRS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7620239257812 2 622.901131 1243.78771 NaN NaN NaN NaN NaN NaN NaN 125.93 1 121.16 120.66 121.66 -4.7681 0 0 0 2.8426 1 24169 24169 0.20733 0 1 + 24096 18071 15832 15838 23853 23853 0.17556745958927422 KPKRRRRRKRR 11 Unmodified _KPKRRRRRKRR_ 0 0 0 REV__LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant REV__LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 797.1420288085938 2 797.035274 1592.05599 NaN NaN NaN NaN NaN NaN NaN 164.67 1 164.67 164.17 165.17 0 0 0 0 0.23698 1 33325 33325 0.26902 0.26902 1 + 24097 16135 15833 15839 23854 23854 0.2836490304973722 KPKSKPDE 8 Unmodified _KPKSKPDE_ 0 0 0 REV__ENSG00000067248|ENST00000251636|DHX29 REV__ENSG00000067248|ENST00000251636|DHX29 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2592468261719 2 464.758549 927.502546 0.18271 8.4917E-05 -0.721 -0.00033509 -0.53829 -0.00025017 464.7582227466376 28.687 0.5273 28.687 28.387 28.914 0 25 14 2 0 0 0 0.71876 1 5056 5056 11.64 0.81637 1 2266600 + 24098 14212 15834 15840 23855 23855 0.035894810348509054 KPLGQRSPGPG 11 Unmodified _KPLGQRSPGPG_ 0 0 0 ENST00000409690.3_1_3:196438896-196439121:-|nuORF ENST00000409690.3_1_3:196438896-196439121:-|nuORF ENST00000409690.3_1_3:196438896-196439121:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7691650390625 2 547.309272 1092.60399 0.35911 0.00019655 -2.4458 -0.0013386 -2.0867 -0.0011421 547.3093608878532 71.285 0.13805 67.705 67.609 67.747 -3.5798 5 3 2 0 0 0 0.7876 1 13422 13422 5.2969 0.54088 1 997990 24099 9567 15835 15841 23856 23856 0.0613935245742141 KPLHELITM 9 Unmodified _KPLHELITM_ 0 0 0 OR4A15|p.V334*|1|0.34|ENSG00000181958|chr11:55368877-55368877|A/-|frameshift_variant;ENSG00000181958|ENST00000641526|OR4A15;nc|ENSG00000181958|Q8NGL6|OR4A15 OR4A15|p.V334*|1|0.34|ENSG00000181958|chr11:55368877-55368877|A/-|frameshift_variant OR4A15|p.V334*|1|0.34|ENSG00000181958|chr11:55368877-55368877|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2781372070312 2 541.307352 1080.60015 NaN NaN NaN NaN NaN NaN NaN 153.84 1 149.08 148.58 149.58 -4.7684 0 0 0 0.19162 1 30572 30572 0.37959 0 1 24100 6754 15836 15842 23857 23857 0.06307546639322936 KPLKKIRIAH 10 Unmodified _KPLKKIRIAH_ 0 0 0 REV__CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant REV__CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.290283203125 2 602.40605 1202.79755 0.39354 0.00023707 -1.8335 -0.0011045 -1.44 -0.00086744 602.9045258430451 144.72 0.20715 144.72 144.65 144.86 0 6 5 2 0 0 0 0.91149 1 28904 28904 1.6526 0 1 1603900 + 24101 13589 15837 15843 23858 23858 0.20425933964293108 KPLKKPKLIVP 11 Unmodified _KPLKKPKLIVP_ 0 0 0 REV__ENSG00000178078|ENST00000594605|STAP2 REV__ENSG00000178078|ENST00000594605|STAP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7640380859375 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 71.047 1 71.047 70.547 71.547 0 0 0 0 0.2367 1 13759 13759 2.9952 2.5369 1 + 24102 18586 15838 15844 23859 23859 0.24977428598162987 KPLKKPKLIVP 11 Unmodified _KPLKKPKLIVP_ 0 0 0 REV__ENSG00000178078|ENST00000594605|STAP2 REV__ENSG00000178078|ENST00000594605|STAP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7593994140625 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 75.857 1 75.857 75.357 76.357 0 0 0 0 0.23698 1 14739 14739 1.3295 0.87119 1 + 24103 18586 15838 15844 23860 23860 0.24977428598162987 KPLKKPKLIVP 11 Unmodified _KPLKKPKLIVP_ 0 0 0 REV__ENSG00000178078|ENST00000594605|STAP2 REV__ENSG00000178078|ENST00000594605|STAP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.752197265625 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 110.97 1 106.55 106.05 107.05 -4.4231 0 0 0 0.23698 1 21860 21860 1.3295 0.92882 1 + 24104 18586 15838 15844 23861 23861 0.24977428598162987 KPLKKPKLIVP 11 Unmodified _KPLKKPKLIVP_ 0 0 0 REV__ENSG00000178078|ENST00000594605|STAP2 REV__ENSG00000178078|ENST00000594605|STAP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7672729492188 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 83.228 1 79.354 78.854 79.854 -3.8736 0 0 0 0.23698 1 15806 15806 1.3295 0.87119 1 + 24105 18586 15838 15844 23862 23862 0.24977428598162987 KPLKKPKLIVP 11 Unmodified _KPLKKPKLIVP_ 0 0 0 REV__ENSG00000178078|ENST00000594605|STAP2 REV__ENSG00000178078|ENST00000594605|STAP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.77880859375 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 82.739 1 79.04 78.54 79.54 -3.6985 0 0 0 0.2367 1 15781 15781 2.9952 2.5369 1 + 24106 18586 15838 15844 23863 23863 0.24977428598162987 KPLLKPGKY 9 Unmodified _KPLLKPGKY_ 0 0 0 REV__ENSG00000124279|ENST00000264669|FASTKD3 REV__ENSG00000124279|ENST00000264669|FASTKD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2716674804688 2 522.334227 1042.6539 NaN NaN NaN NaN NaN NaN NaN 93.863 1 89.872 89.372 90.372 -3.9907 0 0 0 0.23508 1 18387 18387 2.0598 0.21551 1 + 24107 15770 15839 15845 23864 23864 0.13428087133388544 KPLLRKRRL 9 Unmodified _KPLLRKRRL_ 0 0 0 REV__nc|ENSG00000164066|Q9ULD6-4|INTU REV__nc|ENSG00000164066|Q9ULD6-4|INTU MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2557983398438 2 590.411666 1178.80878 0.35973 0.00021239 -2.2529 -0.0013302 -1.8932 -0.0011178 590.4107169515698 171.45 0.10425 171.45 171.4 171.5 0 4 2 2 0 0 0 0.82706 1 35324 35324 0.52476 0.52476 1 4236000 + 24108 17643 15840 15846 23865 23865 0.22652756058437262 KPLNKKLIDYK 11 Unmodified _KPLNKKLIDYK_ 0 0 0 REV__ZNF181|p.K248Sfs*36|1|0.29|ENSG00000197841|chr19:34741122-34741125|CAAA/-|frameshift_variant REV__ZNF181|p.K248Sfs*36|1|0.29|ENSG00000197841|chr19:34741122-34741125|CAAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7593688964844 3 453.950134 1358.82857 NaN NaN NaN NaN NaN NaN NaN 163.25 1 158.16 157.66 158.66 -5.0912 0 0 0 0.22632 1 31759 31759 0.0059557 0 1 + 24109 19366 15841 15847 23866 23866 0.1635104248789503 KPLPRVRL 8 Unmodified _KPLPRVRL_ 0 0 0 ENST00000536411.1_1_12:6483977-6484974:-|nuORF ENST00000536411.1_1_12:6483977-6484974:-|nuORF ENST00000536411.1_1_12:6483977-6484974:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26580810546875 2 489.832186 977.649819 NaN NaN NaN NaN NaN NaN NaN 155.65 1 150.4 149.9 150.9 -5.2526 0 0 0 0.21486 1 30185 30185 9.3474 3.587 1 24110 11024 15842 15848 23867 23867 0.16010042430320937 KPLRKVVLI 9 Unmodified _KPLRKVVLI_ 0 0 0 REV__nc|ENSG00000154930|Q9NUB1-2|ACSS1;REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1 REV__nc|ENSG00000154930|Q9NUB1-2|ACSS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2749633789062 2 533.378969 1064.74339 NaN NaN NaN NaN NaN NaN NaN 150.03 1 145.3 144.8 145.8 -4.7323 0 0 0 0.23508 1 29793 29793 1.8442 1.3195 1 + 24111 17203;24106 15843 15849 23868 23868 0.21360341812737715 KPLTFVKF 8 Unmodified _KPLTFVKF_ 0 0 0 REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2 REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2572326660156 2 490.302396 978.590239 NaN NaN NaN NaN NaN NaN NaN 160.23 1 155.44 154.94 155.94 -4.7952 0 0 0 0.21486 1 31864 31864 4.756 0.42677 1 + 24112 14300 15844 15850 23869 23869 0.10008726696275971 KPNLTHTPE 9 Unmodified _KPNLTHTPE_ 0 0 0 REV__ENST00000333039.2_2_22:39215633-39216080:-|nuORF REV__ENST00000333039.2_2_22:39215633-39216080:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 346.27825927734375 3 346.185579 1035.53491 NaN NaN NaN NaN NaN NaN NaN 77.973 1 74.314 73.814 74.814 -3.6588 0 0 0 0.23508 1 14853 14853 4.897 0 1 + 24113 20636 15845 15851 23870 23870 0.018562684378593985 KPNPFYQFY 9 Unmodified _KPNPFYQFY_ 0 0 0 REV__nc|ENSG00000121775|Q9GZU3-3|TMEM39B REV__nc|ENSG00000121775|Q9GZU3-3|TMEM39B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2979125976562 2 602.295299 1202.57605 NaN NaN NaN NaN NaN NaN NaN 133.03 1 128.39 127.89 128.89 -4.6399 0 0 0 0.23508 1 26225 26225 4.756 0 1 + 24114 24019 15846 15852 23871 23871 -0.017139705226554725 KPNYFKNKL 9 Unmodified _KPNYFKNKL_ 0 0 0 REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3355102539062 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 146.26 1 146.26 145.76 146.76 0 0 0 0 0.23508 1 29242 29242 7.2892 0 1 + 24115 25147 15847 15853 23872 23872 0.08057997639662062 KPPAKKIMM 9 Unmodified _KPPAKKIMM_ 0 0 0 nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT nc|ENSG00000137948|Q58F21-5|BRDT nc|ENSG00000137948|Q58F21-5|BRDT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2816772460938 2 522.308841 1042.60313 NaN NaN NaN NaN NaN NaN NaN 80.011 1 80.011 79.511 80.511 0 0 0 0 0.23508 1 15573 15573 6.7232 2.1943 1 24116 4128 15848 15854 23873 23873 0.0835309849251189 KPPDPPGYP 9 Unmodified _KPPDPPGYP_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1679992675781 3 323.167637 966.481082 NaN NaN NaN NaN NaN NaN NaN 61.143 1 57.774 57.274 58.274 -3.3694 0 0 0 0.23508 1 11397 11397 2.4985 0 1 + 24117 17221 15849 15855 23874 23874 -0.0034990399386742865 KPPKPLKMR 9 Unmodified _KPPKPLKMR_ 0 0 0 REV__ENST00000523836.5_1_5:149785806-149792312:-|nuORF REV__ENST00000523836.5_1_5:149785806-149792312:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7799682617188 2 547.846979 1093.6794 NaN NaN NaN NaN NaN NaN NaN 158.8 1 158.8 158.3 159.3 0 0 0 0 0.1963 1 31886 31886 0.12781 0 1 + 24118 13977 15850 15856 23875 23875 0.13631238384141398 KPPLASAEGP 10 Unmodified _KPPLASAEGP_ 0 0 0 nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19 nc|ENSG00000099364|Q6PCT2-2|FBXL19 nc|ENSG00000099364|Q6PCT2-2|FBXL19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.85369873046875 3 322.846675 965.518196 -0.55626 -0.00017959 0.82073 0.00026497 0.26447 8.5382E-05 322.8468876492711 16.179 0.76338 16.179 15.744 16.507 0 29 21 2 0 0 0 0.76269 1 2508 2508 1.7423 0.089654 1 487550 24119 1890 15851 15857 23876 23876 0.03405767551907957 KPPLWQRGL 9 Unmodified _KPPLWQRGL_ 0 0 0 ENST00000265388.9_1_7:128595269-128597299:-|nuORF ENST00000265388.9_1_7:128595269-128597299:-|nuORF ENST00000265388.9_1_7:128595269-128597299:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7782592773438 2 547.827101 1093.63965 NaN NaN NaN NaN NaN NaN NaN 145.47 1 140.4 139.9 140.9 -5.0671 0 0 0 0.23508 1 28111 28111 10.824 1.4408 1 24120 8357 15852 15858 23877 23877 0.09657434705104606 KPPQPTTST 9 Unmodified _KPPQPTTST_ 0 0 0 sp|Q6SWD5|IR01_HCMVMProteinRL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL1PE=1SV=1 sp|Q6SWD5|IR01_HCMVMProteinRL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL1PE=1SV=1 sp|Q6SWD5|IR01_HCMVMProteinRL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL1PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7334899902344 2 478.756007 955.497461 NaN NaN NaN NaN NaN NaN NaN 131.59 1 126.73 126.23 127.23 -4.8527 0 0 0 0.23508 1 25272 25272 6.7232 0.96273 1 24121 25768 15853 15859 23878 23878 0.017931771722260237 KPPRRRRRRER 11 Unmodified _KPPRRRRRRER_ 0 0 0 ENST00000254998.2_1_20:23331374-23334728:+|nuORF ENST00000254998.2_1_20:23331374-23334728:+|nuORF ENST00000254998.2_1_20:23331374-23334728:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 782.4132080078125 2 781.987989 1561.96143 NaN NaN NaN NaN NaN NaN NaN 172.13 1 167.25 166.75 167.75 -4.881 0 0 0 0.23698 1 34144 34144 0.30703 0.30703 1 24122 8249 15854 15860 23879 23879 0.20292344507765847 KPPSSHSDI 9 Unmodified _KPPSSHSDI_ 0 0 0 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant;NAV3|p.L1995Sfs*5|1|0.05|ENSG00000067798|chr12:78188704-78188705|-/T|frameshift_variant;NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3;nc|ENSG00000067798|Q8IVL0-3|NAV3 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.8468322753906 3 323.166296 966.47706 -0.39168 -0.00012658 1.477 0.00047732 1.0853 0.00035074 323.16637563015433 18.309 0.99119 17.037 16.283 17.275 -1.2722 71 28 4 0 0 0 0.88284 1 2600 2600 0.96228 0 1 856300 24123 1393 15855 15861 23880 23880 -0.007519934875631407 KPPTWVPP 8 Unmodified _KPPTWVPP_ 0 0 0 REV__ENST00000447574.1_1_7:75933094-75933362:+|nuORF REV__ENST00000447574.1_1_7:75933094-75933362:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.533203125 2 461.263271 920.511988 NaN NaN NaN NaN NaN NaN NaN 76.731 1 73.316 72.816 73.816 -3.4151 0 0 0 0.23107 1 14976 14976 0.68139 0.27313 1 + 24124 21772 15856 15862 23881 23881 0.04855294111030162 KPQLLRHME 9 Unmodified _KPQLLRHME_ 0 0 0 nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT nc|ENSG00000066827|Q9P243-4|ZFAT nc|ENSG00000066827|Q9P243-4|ZFAT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3232421875 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 118.73 1 118.73 118.23 119.23 0 0 0 0 0.19657 1 23387 23387 4.897 4.8237 1 24125 1377 15857 15863 23882 23882 0.058808696194319054 KPQLNALEM 9 Unmodified _KPQLNALEM_ 0 0 0 REV__ENST00000533834.1_1_1:104080032-104087738:+|nuORF REV__ENST00000533834.1_1_1:104080032-104087738:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2601928710938 2 522.281334 1042.54812 NaN NaN NaN NaN NaN NaN NaN 163.66 1 158.6 158.1 159.1 -5.0648 0 0 0 0.23508 1 31856 31856 10.074 0.72649 1 + 24126 18998 15858 15864 23883 23883 0.02854383225599122 KPQNGIPLP 9 Unmodified _KPQNGIPLP_ 0 0 0 nc|ENSG00000185437|P55822|SH3BGR;nc|ENSG00000185437|P55822-2|SH3BGR;ENSG00000185437|ENST00000333634|SH3BGR nc|ENSG00000185437|P55822|SH3BGR nc|ENSG00000185437|P55822|SH3BGR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78741455078125 2 482.284734 962.554916 0.01217 5.8694E-06 0.12545 6.0502E-05 0.13762 6.6371E-05 482.28473842307767 117.32 2.1433 117.32 116.29 118.43 0 205 60 5 0 0 0 0.037229 1 23208 23208 74.423 5.3178 1 96715000 24127 12511 15859 15865 23884 23884 0.07214064168476853 KPQSCIDIHY 10 Unmodified _KPQSCIDIHY_ 0 0 0 nc|ENSG00000106330|O75425-4|MOSPD3 nc|ENSG00000106330|O75425-4|MOSPD3 nc|ENSG00000106330|O75425-4|MOSPD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2791748046875 2 602.294973 1202.57539 NaN NaN NaN NaN NaN NaN NaN 73.557 1 70.216 69.716 70.716 -3.3407 0 0 0 0.22588 1 14341 14341 9.3831 0.78985 1 24128 12275 15860 15866 23885 23885 -0.017791332340266308 KPQSTQVPCCL 11 Unmodified _KPQSTQVPCCL_ 0 0 0 REV__TNFRSF8|p.Y424C|1|0.16|ENSG00000120949|chr1:12126198-12126198|A/G|missense_variant REV__TNFRSF8|p.Y424C|1|0.16|ENSG00000120949|chr1:12126198-12126198|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.299072265625 2 602.296659 1202.57876 NaN NaN NaN NaN NaN NaN NaN 155.76 1 150.51 150.01 151.01 -5.2526 0 0 0 0.23151 1 30206 30206 7.1017 0.89594 1 + 24129 24827 15861 15867 23886 23886 -0.014422064516566024 KPRAGHGSP 9 Unmodified _KPRAGHGSP_ 0 0 0 REV__ENST00000489259.5_1_10:38674311-38691690:-|nuORF REV__ENST00000489259.5_1_10:38674311-38691690:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7495422363281 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 43.125 1 40.406 39.906 40.906 -2.7191 0 0 0 0.23508 1 8077 8077 10.824 2.2306 1 + 24130 22287 15862 15868 23887 23887 0.02662569534618342 KPRAVLKPRR 10 Unmodified _KPRAVLKPRR_ 0 0 0 nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C;nc|ENSG00000074211|Q9Y2T4-4|PPP2R2C;nc|ENSG00000074211|Q9Y2T4-2|PPP2R2C;ENSG00000074211|ENST00000382599|PPP2R2C nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 611.2874145507812 2 610.906748 1219.79894 NaN NaN NaN NaN NaN NaN NaN 168.8 1 168.8 168.3 169.3 0 0 0 0 2.8426 1 34603 34603 0.13989 0 1 24131 1495 15863 15869 23888 23888 0.1978356805304884 KPRGPLQALY 10 Unmodified _KPRGPLQALY_ 0 0 0 ENST00000318003.11_1_19:14041215-14041674:+|nuORF ENST00000318003.11_1_19:14041215-14041674:+|nuORF ENST00000318003.11_1_19:14041215-14041674:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21343994140625 3 381.560869 1141.66078 -0.12125 -4.6263E-05 0.98116 0.00037437 0.85992 0.00032811 381.56114123627805 22.369 0.41766 22.369 22.155 22.573 0 27 11 3 0 0 0 1.1344 1 3808 3808 0.0013812 0.0013812 1 2781700 24132 8690 15864 15870 23889 23889 0.09561400013944876 KPRGPLQALY 10 Unmodified _KPRGPLQALY_ 0 0 0 ENST00000318003.11_1_19:14041215-14041674:+|nuORF ENST00000318003.11_1_19:14041215-14041674:+|nuORF ENST00000318003.11_1_19:14041215-14041674:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 381.560869 1141.66078 -0.021563 -8.2276E-06 0.76522 0.00029198 0.74365 0.00028375 381.5611258894292 23.9 0.3502 22.366 22.191 22.542 -1.5342 -0.0014211 -0.0001182 NaN 0.0013812 26 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2369900 24133 8690 15864 15870 0.09561400013944876 KPRKLIRPH 9 Unmodified _KPRKLIRPH_ 0 0 0 REV__nc|ENSG00000105993|O75190-4|DNAJB6 REV__nc|ENSG00000105993|O75190-4|DNAJB6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 382.2523193359375 3 382.25237 1143.73528 NaN NaN NaN NaN NaN NaN NaN 176.76 1 171.86 171.36 172.36 -4.9008 0 0 0 0.23508 1 35245 35245 0.23584 0 1 + 24134 23993 15865 15871 23890 23890 0.1691620761600916 KPRPLHQS 8 Unmodified _KPRPLHQS_ 0 0 0 REV__ENSG00000121281|ENST00000673801|ADCY7 REV__ENSG00000121281|ENST00000673801|ADCY7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7819519042969 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 17.597 1 16.286 15.786 16.786 -1.3109 0 0 0 0.21486 1 2825 2825 4.756 0 1 + 24135 15649 15866 15872 23891 23891 0.06343715602793054 KPRWRLWQWWW 11 Unmodified _KPRWRLWQWWW_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3202514648438 3 576.640516 1726.89972 NaN NaN NaN NaN NaN NaN NaN 173.23 1 168.35 167.85 168.85 -4.881 0 0 0 0.23698 1 34425 34425 0.45452 0.45452 1 + 24136 24768 15867 15873 23892 23892 0.0653460003593409 KPSDAILPP 9 Unmodified _KPSDAILPP_ 0 0 0 REV__PRKAA2|p.R369M|1|0.56|ENSG00000162409|chr1:56704288-56704288|G/T|missense_variant REV__PRKAA2|p.R369M|1|0.56|ENSG00000162409|chr1:56704288-56704288|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.18353271484375 3 313.183287 936.528032 NaN NaN NaN NaN NaN NaN NaN 92.738 1 88.899 88.399 89.399 -3.8387 0 0 0 0.23508 1 17773 17773 2.4985 0.84587 1 + 24137 17496 15868 15874 23893 23893 0.057229555572689605 KPSRSVPDVP 10 Unmodified _KPSRSVPDVP_ 0 0 0 REV__NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant REV__NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2711181640625 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 167.05 1 162.16 161.66 162.66 -4.8916 0 0 0 0.20365 1 32798 32798 27.629 1.3607 1 + 24138 16975 15869 15875 23894 23894 0.055685303633026706 KPTDFKRKKL 10 Unmodified _KPTDFKRKKL_ 0 0 0 nc|ENSG00000186063|Q96BJ3-2|AIDA;ENST00000514881.1_1_4:159199390-159199825:+|nuORF;nc|ENSG00000186063|Q96BJ3-3|AIDA;ENSG00000186063|ENST00000340020|AIDA nc|ENSG00000186063|Q96BJ3-2|AIDA nc|ENSG00000186063|Q96BJ3-2|AIDA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7547607421875 2 630.892972 1259.77139 NaN NaN NaN NaN NaN NaN NaN 120.39 1 115.93 115.43 116.43 -4.467 0 0 0 0.22588 1 23180 23180 3.2813 0.28607 1 24139 7030 15870 15876 23895 23895 0.151896200021838 KPTGLVLLLLL 11 Unmodified _KPTGLVLLLLL_ 0 0 0 REV__ENSG00000143318|ENST00000368078|CASQ1 REV__ENSG00000143318|ENST00000368078|CASQ1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2496337890625 2 590.407392 1178.80023 NaN NaN NaN NaN NaN NaN NaN 136.17 1 131.53 131.03 132.03 -4.6399 0 0 0 0.23698 1 26867 26867 1.0715 0.61312 1 + 24140 16711 15871 15877 23896 23896 0.2179834457861034 KPTRVDSEY 9 Unmodified _KPTRVDSEY_ 0 0 0 REV__ENSG00000091436|ENST00000375213|MAP3K20 REV__ENSG00000091436|ENST00000375213|MAP3K20 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.792724609375 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 94.474 1 90.282 89.782 90.782 -4.1911 0 0 0 0.23508 1 18021 18021 13.042 0.51092 1 + 24141 14571 15872 15878 23897 23897 -0.0026405277033063612 KPVFSQPEGY 10 Unmodified _KPVFSQPEGY_ 0 0 0 ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;nc|ENSG00000196159|Q6V0I7-3|FAT4;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant;FAT4|p.E1154Gfs*9|1|0.43|ENSG00000196159|chr4:125319867-125319868|-/G|frameshift_variant;FAT4|p.D1128Tfs*8|1|0.12|ENSG00000196159|chr4:125319790-125319790|A/-|frameshift_variant ENSG00000196159|ENST00000394329|FAT4 ENSG00000196159|ENST00000394329|FAT4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3201904296875 2 576.290214 1150.56587 NaN NaN NaN NaN NaN NaN NaN 132.95 1 128.31 127.81 128.81 -4.6399 0 0 0 0.22588 1 26210 26210 6.2058 0 1 24142 7238 15873 15879 23898 23898 -0.0033857824789720325 KPVKIDPKII 10 Unmodified _KPVKIDPKII_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 575.84423828125 2 575.881542 1149.74853 NaN NaN NaN NaN NaN NaN NaN 67.014 1 63.518 63.018 64.018 -3.4965 0 0 0 0.22588 1 12569 12569 3.5965 0.60125 1 24143 7191 15874 15880 23899 23899 0.17964600884693027 KPVKPTRAGK 10 Unmodified _KPVKPTRAGK_ 0 0 0 REV__ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant REV__ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27392578125 2 541.345658 1080.67676 NaN NaN NaN NaN NaN NaN NaN 164.65 1 159.86 159.36 160.36 -4.7898 0 0 0 0.22588 1 32916 32916 10.8 3.5103 1 + 24144 18121 15875 15881 23900 23900 0.139651062508392 KPVLEEQH 8 Unmodified _KPVLEEQH_ 0 0 0 REV__ENSG00000146411|ENST00000275230|SLC2A12 REV__ENSG00000146411|ENST00000275230|SLC2A12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2653503417969 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 83.814 1 80.115 79.615 80.615 -3.6985 0 0 0 0.21486 1 16006 16006 10.824 0.75 1 + 24145 16887 15876 15882 23901 23901 0.02332883409144415 KPVPLRGKPLR 11 Unmodified _KPVPLRGKPLR_ 0 0 0 REV__ENSG00000134986|ENST00000257435|NREP REV__ENSG00000134986|ENST00000257435|NREP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7688598632812 2 630.916781 1259.81901 NaN NaN NaN NaN NaN NaN NaN 146.22 1 141.11 140.61 141.61 -5.1108 0 0 0 0.23698 1 28276 28276 2.4985 1.0166 1 + 24146 16239 15877 15883 23902 23902 0.19949318993008092 KPVPVTNPVTV 11 Unmodified _KPVPVTNPVTV_ 0 0 0 ZNF512B|p.K292N|1|0.28|ENSG00000196700|chr20:63966299-63966299|C/A|missense_variant ZNF512B|p.K292N|1|0.28|ENSG00000196700|chr20:63966299-63966299|C/A|missense_variant ZNF512B|p.K292N|1|0.28|ENSG00000196700|chr20:63966299-63966299|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3170776367188 2 575.845156 1149.67576 0.4415 0.00025423 -1.0852 -0.00062488 -0.64366 -0.00037065 575.8428212077807 159.06 0.10991 153.79 153.69 153.8 -5.2712 4 2 2 0 0 0 0.76088 1 30851 30851 7.609 0.88579 1 669580 24147 26624 15878 15884 23903 23903 0.10690847091268552 KPVRPPRL 8 Unmodified _KPVRPPRL_ 0 0 0 REV__ENSG00000178078|ENST00000594605|STAP2 REV__ENSG00000178078|ENST00000594605|STAP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7823486328125 2 481.816536 961.618519 NaN NaN NaN NaN NaN NaN NaN 162.65 1 157.86 157.36 158.36 -4.7898 0 0 0 0.23487 1 32371 32371 1.4551 0 1 + 24148 18586 15879 15885 23904 23904 0.1361746939621753 KPVSRIVKPQ 10 Unmodified _KPVSRIVKPQ_ 0 0 0 ENSG00000198908|ENST00000457056|GPRASP3 ENSG00000198908|ENST00000457056|GPRASP3 ENSG00000198908|ENST00000457056|GPRASP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.319580078125 2 576.36659 1150.71863 NaN NaN NaN NaN NaN NaN NaN 166.61 1 161.63 161.13 162.13 -4.9811 0 0 0 0.22588 1 32679 32679 5.2969 0.76802 1 24149 7519 15880 15886 23905 23905 0.14929661939368088 KPVVLRKRR 9 Unmodified _KPVVLRKRR_ 0 0 0 DNAJC13|p.T1375Hfs*28|1|0.18|ENSG00000138246|chr3:132496626-132496626|A/-|frameshift_variant;DNAJC13|p.G1667Vfs*22|1|0.33|ENSG00000138246|chr3:132505410-132505410|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13 DNAJC13|p.T1375Hfs*28|1|0.18|ENSG00000138246|chr3:132496626-132496626|A/-|frameshift_variant DNAJC13|p.T1375Hfs*28|1|0.18|ENSG00000138246|chr3:132496626-132496626|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3394775390625 2 576.396016 1150.77748 NaN NaN NaN NaN NaN NaN NaN 136.72 1 131.89 131.39 132.39 -4.8307 0 0 0 0.23508 1 26332 26332 0.52476 0 1 24150 874 15881 15887 23906 23906 0.20812183024372644 KPVYANEV 8 Unmodified _KPVYANEV_ 0 0 0 REV__NEXN|p.K92N|1|0.37|ENSG00000162614|chr1:77918016-77918016|G/T|missense_variant REV__NEXN|p.K92N|1|0.37|ENSG00000162614|chr1:77918016-77918016|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24609375 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 137.62 1 132.7 132.2 133.2 -4.9216 0 0 0 0.21039 1 26456 26456 16.942 1.0951 1 + 24151 24356 15882 15888 23907 23907 0.01858096006139931 KPWKMNLSKL 10 Unmodified _KPWKMNLSKL_ 0 0 0 ENSG00000146013|ENST00000274721|GFRA3 ENSG00000146013|ENST00000274721|GFRA3 ENSG00000146013|ENST00000274721|GFRA3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7798461914062 2 622.862826 1243.7111 NaN NaN NaN NaN NaN NaN NaN 67.549 1 67.549 67.049 68.049 0 0 0 0 0.22588 1 13059 13059 2.9952 0.26005 1 24152 4635 15883 15889 23908 23908 0.09899186347433897 KPWLRKGH 8 Unmodified _KPWLRKGH_ 0 0 0 ENST00000398637.9_1_12:46662646-46662751:-|nuORF;ENST00000546893.5_1_12:46637015-46662751:-|nuORF;ENST00000550173.1_2_12:46633588-46662751:-|nuORF ENST00000398637.9_1_12:46662646-46662751:-|nuORF ENST00000398637.9_1_12:46662646-46662751:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.2071228027344 3 341.206649 1020.59812 NaN NaN NaN NaN NaN NaN NaN 93.897 1 93.897 93.397 94.397 0 0 0 0 0.21486 1 18382 18382 0.40072 0 1 24153 9485 15884 15890 23909 23909 0.08864298736421006 KPWSKRWERPN 11 Unmodified _KPWSKRWERPN_ 0 0 0 ENSG00000115364|ENST00000393909|MRPL19 ENSG00000115364|ENST00000393909|MRPL19 ENSG00000115364|ENST00000393909|MRPL19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3981323242188 2 742.399484 1482.78442 NaN NaN NaN NaN NaN NaN NaN 100.34 1 100.34 99.838 100.84 0 0 0 0 0.23698 1 19685 19685 2.7352 1.4057 1 24154 2850 15885 15891 23910 23910 0.062334511142580595 KPWWESRFSWR 11 Unmodified _KPWWESRFSWR_ 0 0 0 ENST00000482462.1_1_7:540672-552294:-|nuORF ENST00000482462.1_1_7:540672-552294:-|nuORF ENST00000482462.1_1_7:540672-552294:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2744140625 3 522.265115 1563.77352 NaN NaN NaN NaN NaN NaN NaN 61.547 1 61.547 61.047 62.047 0 0 0 0 0.22632 1 11806 11806 0.58532 0 1 24155 10395 15886 15892 23911 23911 0.014180487399698904 KPWWWHLRVQE 11 Unmodified _KPWWWHLRVQE_ 0 0 0 ENSG00000160200|ENST00000398165|CBS;nc|ENSG00000160200|P35520-2|CBS;ENST00000462349.5_1_21:44473992-44479496:-|nuORF ENSG00000160200|ENST00000398165|CBS ENSG00000160200|ENST00000398165|CBS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2698364257812 3 522.277244 1563.8099 NaN NaN NaN NaN NaN NaN NaN 148.42 1 148.42 147.92 148.92 0 0 0 0 0.22632 1 29703 29703 0.172 0 1 24156 5236 15887 15893 23912 23912 0.05054925636659391 KQAELSGPV 9 Unmodified _KQAELSGPV_ 0 0 0 REV__ENST00000487389.5_1_3:146246602-146262351:-|nuORF REV__ENST00000487389.5_1_3:146246602-146262351:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2504577636719 2 464.758549 927.502546 0.21055 9.7856E-05 -0.55571 -0.00025827 -0.34515 -0.00016041 464.7584018754502 88.854 0.5638 85.104 84.844 85.408 -3.7501 23 15 2 0 0 0 0.60698 1 16967 16967 23.148 1.4018 1 736110 + 24157 22006 15888 15894 23913 23913 0.03589481034862274 KQARKMSI 8 Unmodified _KQARKMSI_ 0 0 0 nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant nc|ENSG00000144824|Q86SQ0-2|PHLDB2 nc|ENSG00000144824|Q86SQ0-2|PHLDB2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25299072265625 2 481.284211 960.55387 NaN NaN NaN NaN NaN NaN NaN 128.64 1 128.64 128.14 129.14 0 0 0 0 0.20896 1 25407 25407 18.135 1.9859 1 24158 4581 15889 15895 23914 23914 0.07201526527921942 KQCLATFDPE 10 Unmodified _KQCLATFDPE_ 0 0 0 REV__RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant REV__RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3152465820312 2 576.273706 1150.53286 NaN NaN NaN NaN NaN NaN NaN 157.14 1 152.35 151.85 152.85 -4.7885 0 0 0 0.22588 1 31248 31248 6.2058 0.47393 1 + 24159 16536 15890 15896 23915 23915 -0.0363852836226215 KQCLRQRF 8 Unmodified _KQCLRQRF_ 0 0 0 ENST00000431232.6_1_16:427129-427790:-|nuORF ENST00000431232.6_1_16:427129-427790:-|nuORF ENST00000431232.6_1_16:427129-427790:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016296386719 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 6.8271 1 5.7825 5.2825 6.2825 -1.0446 0 0 0 0.21486 1 520 520 0.40072 0 1 24160 9783 15891 15897 23916 23916 0.05087733650748305 KQCPQSIHP 9 Carbamidomethyl (C) _KQC(Carbamidomethyl (C))PQSIHP_ KQC(1)PQSIHP KQC(56)PQSIHP 0 1 0 REV__nc|ENSG00000168781|Q6PFW1-7|PPIP5K1 REV__nc|ENSG00000168781|Q6PFW1-7|PPIP5K1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.774169921875 2 547.774208 1093.53386 0.44545 0.00024401 -0.3839 -0.00021029 0.061552 3.3717E-05 547.7740681267937 38.893 3.1357 38.893 37.363 40.499 0 259 88 4 0 0 0 0.09885 1 7196 7196 56.177 12.319 1 35776000 + 24161 18055 15892 15898 23917 23917 20 -0.009162692027075536 KQCPQSIHP 9 Carbamidomethyl (C) _KQC(Carbamidomethyl (C))PQSIHP_ KQC(1)PQSIHP KQC(56)PQSIHP 0 1 0 REV__nc|ENSG00000168781|Q6PFW1-7|PPIP5K1 REV__nc|ENSG00000168781|Q6PFW1-7|PPIP5K1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7742309570312 2 547.774208 1093.53386 0.013198 7.2296E-06 0.020887 1.1441E-05 0.034085 1.8671E-05 547.774292111321 41.752 3.3031 39.117 37.156 40.459 -2.6348 277 93 5 0 0 0 0.09885 1 7797 7797 56.177 12.319 1 44108000 + 24162 18055 15892 15898 23918 23918 20 -0.009162692027075536 KQCPQSIHP 9 Carbamidomethyl (C) _KQC(Carbamidomethyl (C))PQSIHP_ KQC(1)PQSIHP KQC(65)PQSIHP 0 1 0 REV__nc|ENSG00000168781|Q6PFW1-7|PPIP5K1 REV__nc|ENSG00000168781|Q6PFW1-7|PPIP5K1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7744750976562 2 547.774208 1093.53386 -0.02239 -1.2265E-05 0.091308 5.0016E-05 0.068918 3.7751E-05 547.7743309017609 41.635 3.2915 38.984 37.107 40.398 -2.651 280 93 4 0 0 0 0.067773 1 7380 7380 65.235 21.377 1 38930000 + 24163 18055 15892 15898 23919 23919 20 -0.009162692027075536 KQCPQSIHP 9 Carbamidomethyl (C) _KQC(Carbamidomethyl (C))PQSIHP_ KQC(1)PQSIHP KQC(52)PQSIHP 0 1 0 REV__nc|ENSG00000168781|Q6PFW1-7|PPIP5K1 REV__nc|ENSG00000168781|Q6PFW1-7|PPIP5K1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7745971679688 2 547.774208 1093.53386 0.12093 6.6241E-05 -0.060635 -3.3214E-05 0.060292 3.3026E-05 547.774235471764 41.545 3.0575 39.055 37.439 40.497 -2.4896 252 86 4 0 0 0 0.11032 1 7354 7354 52.268 8.4101 1 31900000 + 24164 18055 15892 15898 23920 23920 20 -0.009162692027075536 KQDFETVL 8 Unmodified _KQDFETVL_ 0 0 0 nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3 nc|ENSG00000005175|Q9H6T3-3|RPAP3 nc|ENSG00000005175|Q9H6T3-3|RPAP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2587890625 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 93.275 1 93.275 92.775 93.775 0 0 0 0 0.22847 1 18250 18250 10.074 9.6943 1 24165 986 15893 15899 23921 23921 0.012100613149868877 KQEERFYKRVW 11 Unmodified _KQEERFYKRVW_ 0 0 0 REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6884765625 3 523.615925 1567.82595 NaN NaN NaN NaN NaN NaN NaN 149.3 1 144.18 143.68 144.68 -5.1204 0 0 0 0.22632 1 28927 28927 0.026206 0 1 + 24166 19189 15894 15900 23922 23922 0.06474587082925609 KQELGLPLWIL 11 Unmodified _KQELGLPLWIL_ 0 0 0 REV__ENST00000261637.4_1_12:101767510-101768592:+|nuORF REV__ENST00000261637.4_1_12:101767510-101768592:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21588134765625 3 437.267463 1308.78056 -0.21636 -9.4607E-05 1.1915 0.00052099 0.9751 0.00042638 437.60250744955556 109.29 0.99065 104.84 104.46 105.45 -4.4518 40 27 2 0 0 0 0.96117 1 20992 20992 6.6235 2.5068 1 1110900 + 24167 20187 15895 15901 23923 23923 0.1385196856786024 KQEMHQRALHE 11 Unmodified _KQEMHQRALHE_ 0 0 0 REV__ENSG00000008197|ENST00000008391|TFAP2D REV__ENSG00000008197|ENST00000008391|TFAP2D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 469.56829833984375 3 469.570098 1405.68847 NaN NaN NaN NaN NaN NaN NaN 171.65 1 171.65 171.15 172.15 0 0 0 0 0.23698 1 35380 35380 2.6312 0.19645 1 + 24168 13898 15896 15902 23924 23924 0.0018493521188247541 KQETTRPDITA 11 Unmodified _KQETTRPDITA_ 0 0 0 REV__EXOSC10|p.S785I|1|0.05|ENSG00000171824|chr1:11069693-11069693|C/A|missense_variant REV__EXOSC10|p.S785I|1|0.05|ENSG00000171824|chr1:11069693-11069693|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7677001953125 2 630.333141 1258.65173 0.41044 0.00025872 -0.050129 -3.1598E-05 0.36031 0.00022712 630.3331201493431 32.863 0.38316 32.863 32.642 33.025 0 22 10 3 0 0 0 0.48798 1 6003 6003 23.79 0 1 1444600 + 24169 23505 15897 15903 23925 23925 0.032749618669413394 KQETTRPDITA 11 Unmodified _KQETTRPDITA_ 0 0 0 REV__EXOSC10|p.S785I|1|0.05|ENSG00000171824|chr1:11069693-11069693|C/A|missense_variant REV__EXOSC10|p.S785I|1|0.05|ENSG00000171824|chr1:11069693-11069693|C/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 630.333141 1258.65173 0.41044 0.00025872 -0.050129 -3.1598E-05 0.36031 0.00022712 630.3331201493431 32.863 0.38316 32.863 32.642 33.025 0 -0.0476 0.00027798 NaN 23.79 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1444600 + 24170 23505 15897 15903 0.032749618669413394 KQEVDKFS 8 Unmodified _KQEVDKFS_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2673645019531 2 490.756007 979.497461 -0.59844 -0.00029369 1.228 0.00060267 0.6296 0.00030898 490.75652724430756 23.844 0.34372 22.056 21.876 22.22 -1.7886 17 9 2 0 0 0 0.88974 1 3886 3886 0.25148 0.12366 1 809120 + 24171 24099 15898 15904 23926 23926 0.006891771722393969 KQEWLKKFWFL 11 Unmodified _KQEWLKKFWFL_ 0 0 0 ENSG00000019485|ENST00000683152|PRDM11 ENSG00000019485|ENST00000683152|PRDM11 ENSG00000019485|ENST00000683152|PRDM11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 776.6814575195312 2 776.937379 1551.86021 NaN NaN NaN NaN NaN NaN NaN 171.77 1 166.9 166.4 167.4 -4.873 0 0 0 0.23698 1 34058 34058 1.3295 1.0225 1 24172 1121 15899 15905 23927 23927 0.106350352418076 KQFGAADL 8 Unmodified _KQFGAADL_ 0 0 0 REV__nc|ENSG00000107130|P62166-2|NCS1 REV__nc|ENSG00000107130|P62166-2|NCS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2368469238281 2 425.226885 848.439217 NaN NaN NaN NaN NaN NaN NaN 79.564 1 79.564 79.064 80.064 0 0 0 0 0.21486 1 15482 15482 5.7604 0 1 + 24173 15073 15900 15906 23928 23928 0.0089354031762241 KQGPWLEEEE 10 Unmodified _KQGPWLEEEE_ 0 0 0 ENSG00000184502|ENST00000329402|GAST ENSG00000184502|ENST00000329402|GAST ENSG00000184502|ENST00000329402|GAST MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7673950195312 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 140.98 1 136.33 135.83 136.83 -4.6493 0 0 0 2.8426 1 27843 27843 0.26539 0.25212 1 24174 6914 15901 15907 23929 23929 -0.03996104807015399 KQHLYLKAT 9 Unmodified _KQHLYLKAT_ 0 0 0 REV__nc|ENSG00000186272|P17021-3|ZNF17 REV__nc|ENSG00000186272|P17021-3|ZNF17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.8941345214844 3 367.885353 1100.63423 -0.026319 -9.6825E-06 -0.092371 -3.3982E-05 -0.11869 -4.3665E-05 367.8852627877622 40.813 1.1244 38.273 37.887 39.011 -2.5398 59 31 2 0 0 0 0.54058 1 7248 7248 12.241 4.0851 1 1921900 + 24175 19024 15902 15908 23930 23930 0.08793711122598324 KQHLYLKAT 9 Unmodified _KQHLYLKAT_ 0 0 0 REV__nc|ENSG00000186272|P17021-3|ZNF17 REV__nc|ENSG00000186272|P17021-3|ZNF17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 367.885353 1100.63423 -0.094449 -3.4746E-05 -0.0077699 -2.8584E-06 -0.10222 -3.7605E-05 367.88529623280374 38.58 1.1297 38.58 37.965 39.095 0 0.24792 -0.00015968 NaN 12.241 72 31 3 NaN NaN NaN NaN 0 NaN NaN 0 1836700 + 24176 19024 15902 15908 0.08793711122598324 KQHNTIIKKY 10 Unmodified _KQHNTIIKKY_ 0 0 0 REV__SYCP2|p.D922Y|1|0.32|ENSG00000196074|chr20:59880974-59880974|C/A|missense_variant REV__SYCP2|p.D922Y|1|0.32|ENSG00000196074|chr20:59880974-59880974|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2535400390625 3 424.918945 1271.73501 0.46281 0.00019666 -0.29791 -0.00012659 0.1649 7.007E-05 424.91873646557605 78.113 0.76955 78.113 77.773 78.542 0 38 21 2 0 0 0 0.75844 1 15260 15260 3.0723 0.22898 1 2346400 + 24177 24757 15903 15909 23931 23931 0.1100074310547825 KQHNTIIKKY 10 Unmodified _KQHNTIIKKY_ 0 0 0 REV__SYCP2|p.D922Y|1|0.32|ENSG00000196074|chr20:59880974-59880974|C/A|missense_variant REV__SYCP2|p.D922Y|1|0.32|ENSG00000196074|chr20:59880974-59880974|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2535705566406 3 424.918945 1271.73501 0.0064459 2.739E-06 0.21571 9.166E-05 0.22216 9.4399E-05 425.253401045286 81.734 0.6189 77.894 77.577 78.196 -3.8392 27 17 2 0 0 0 0.75679 1 15566 15566 3.5871 0.95582 1 1227800 + 24178 24757 15903 15909 23932 23932 0.1100074310547825 KQHSPSMF 8 Unmodified _KQHSPSMF_ 0 0 0 REV__ENST00000318238.8_1_7:92777536-92777668:-|nuORF REV__ENST00000318238.8_1_7:92777536-92777668:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23162841796875 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 6.2128 1 6.2128 5.7128 6.7128 0 0 0 0 0.21486 1 438 438 0.69038 0 1 + 24179 20533 15904 15910 23933 23933 -0.03307014668496322 KQISQAYEV 9 Unmodified _KQISQAYEV_ 0 0 0 DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1 DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2822875976562 2 533.282389 1064.55022 0.35087 0.00018711 0.14892 7.9418E-05 0.49979 0.00026653 533.2824142578534 49.318 0.59846 49.318 49.055 49.653 0 34 16 3 0 0 0 0.0087568 3 9338 9294;9336;9338 107.19 39.843 1 3885000 24180 870 15905 15911 23934;23935;23936 23936 0.02053135235018999 KQISQAYEV 9 Unmodified _KQISQAYEV_ 0 0 0 DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1 DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2825317382812 2 533.282389 1064.55022 -0.11022 -5.878E-05 0.26738 0.00014259 0.15715 8.3808E-05 533.2826311620769 52.305 0.52291 49.423 49.07 49.592 -2.8824 33 14 3 0 0 0 0.10573 3 9957 9899;9950;9957 53.833 40.54 1 4547000 24181 870 15905 15911 23937;23938;23939 23939 0.02053135235018999 KQISQAYEV 9 Unmodified _KQISQAYEV_ 0 0 0 DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1 DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2826538085938 2 533.282389 1064.55022 0.42576 0.00022705 -0.016939 -9.033E-06 0.40882 0.00021802 533.2823368253147 52.475 0.52074 49.387 49.099 49.619 -3.0876 23 14 2 0 0 0 0.029716 2 9669 9621;9669 81.89 14.546 1 4759700 24182 870 15905 15911 23940;23941 23941 0.02053135235018999 KQISQAYEV 9 Unmodified _KQISQAYEV_ 0 0 0 DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1 DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant DNAJA1|p.F92Lfs*22|1|0.37|ENSG00000086061|chr9:33026951-33026951|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825927734375 2 533.282389 1064.55022 0.0013394 7.1428E-07 0.88932 0.00047426 0.89065 0.00047497 533.2826091704533 52.496 0.49219 49.4 49.061 49.553 -3.0954 31 13 3 0 0 0 0.016216 2 9685 9641;9685 96.111 28.03 1 3119900 24183 870 15905 15911 23942;23943 23943 0.02053135235018999 KQKKRKRKKKI 11 Unmodified _KQKKRKRKKKI_ 0 0 0 ENST00000415226.1_1_2:237168173-237186074:+|nuORF ENST00000415226.1_1_2:237168173-237186074:+|nuORF ENST00000415226.1_1_2:237168173-237186074:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2767333984375 3 490.347333 1468.02017 NaN NaN NaN NaN NaN NaN NaN 157.11 1 151.84 151.34 152.34 -5.2712 0 0 0 0.23698 1 30476 30476 0.094841 0.094841 1 24184 9610 15906 15912 23944 23944 0.30488008029533376 KQKLLPIPQ 9 Unmodified _KQKLLPIPQ_ 0 0 0 REV__nc|ENSG00000227345|Q86W56-5|PARG REV__nc|ENSG00000227345|Q86W56-5|PARG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2609252929688 2 532.844959 1063.67537 0.36043 0.00019206 -0.97549 -0.00051978 -0.61505 -0.00032773 533.3479654009628 145.18 0.17552 140.24 140.17 140.34 -4.9445 5 4 2 0 0 0 0.87634 1 28071 28071 6.7232 0 1 1089500 + 24185 19732 15907 15913 23945 23945 0.14607472162083468 KQKRRREA 8 Unmodified _KQKRRREA_ 0 0 0 REV__nc|ENSG00000171056|Q9BT81-2|SOX7 REV__nc|ENSG00000171056|Q9BT81-2|SOX7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55670166015625 3 357.887979 1070.64211 -0.50232 -0.00017977 -0.57162 -0.00020458 -1.0739 -0.00038435 358.2225469865555 104.92 0.73881 100.7 100.33 101.07 -4.2183 27 20 2 0 0 0 1.0271 1 20570 20570 1.1933 0.12188 1 963840 + 24186 24163 15908 15914 23946 23946 0.10961283162737345 KQKVELMIV 9 Unmodified _KQKVELMIV_ 0 0 0 REV__DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant REV__DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 544.3316650390625 2 544.330827 1086.6471 NaN NaN NaN NaN NaN NaN NaN 164.92 1 159.88 159.38 160.38 -5.0446 0 0 0 0.23508 1 32202 32202 11.64 0 1 + 24187 13716 15909 15915 23947 23947 0.10724406190479385 KQLALGRGQ 9 Unmodified _KQLALGRGQ_ 0 0 0 REV__nc|ENSG00000115282|Q49AM3-2|TTC31 REV__nc|ENSG00000115282|Q49AM3-2|TTC31 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1500244140625 3 324.197931 969.571963 -0.40932 -0.0001327 0.19762 6.4068E-05 -0.2117 -6.8631E-05 324.1979822814679 34.316 0.6614 31.999 31.664 32.325 -2.3175 64 18 5 0 0 0 0.61771 1 6241 6241 0.40827 0.335 1 38794000 + 24188 15418 15910 15916 23948 23948 0.08595984774285625 KQLALGRGQ 9 Unmodified _KQLALGRGQ_ 0 0 0 REV__nc|ENSG00000115282|Q49AM3-2|TTC31 REV__nc|ENSG00000115282|Q49AM3-2|TTC31 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 324.197931 969.571963 0.2019 6.5456E-05 -0.45935 -0.00014892 -0.25745 -8.3466E-05 324.19776248805016 34.209 0.6875 32.063 31.707 32.394 -2.1468 0.012689 -0.00050375 NaN 0.40827 64 19 4 NaN NaN NaN NaN 0 NaN NaN 0 40599000 + 24189 15418 15910 15916 0.08595984774285625 KQLALGRGQ 9 Unmodified _KQLALGRGQ_ 0 0 0 REV__nc|ENSG00000115282|Q49AM3-2|TTC31 REV__nc|ENSG00000115282|Q49AM3-2|TTC31 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 324.197931 969.571963 -0.31564 -0.00010233 0.12931 4.1921E-05 -0.18633 -6.0407E-05 324.19795715902995 34.254 0.73356 32.038 31.67 32.403 -2.2158 -0.011648 6.8782E-05 NaN 0.40827 69 20 4 NaN NaN NaN NaN 0 NaN NaN 0 36776000 + 24190 15418 15910 15916 0.08595984774285625 KQLFELLNF 9 Unmodified _KQLFELLNF_ 0 0 0 nc|ENSG00000198689|Q92581-3|SLC9A6;nc|ENSG00000198689|Q92581-1|SLC9A6;ENSG00000198689|ENST00000630721|SLC9A6;nc|ENSG00000198689|Q92581|SLC9A6 nc|ENSG00000198689|Q92581-3|SLC9A6 nc|ENSG00000198689|Q92581-3|SLC9A6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3234252929688 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 122.85 1 118.28 117.78 118.78 -4.5757 0 0 0 0.1964 1 24220 24220 0.40827 0 1 24191 7472 15911 15917 23949 23949 0.06935175545504535 KQLFELLNF 9 Unmodified _KQLFELLNF_ 0 0 0 nc|ENSG00000198689|Q92581-3|SLC9A6;nc|ENSG00000198689|Q92581-1|SLC9A6;ENSG00000198689|ENST00000630721|SLC9A6;nc|ENSG00000198689|Q92581|SLC9A6 nc|ENSG00000198689|Q92581-3|SLC9A6 nc|ENSG00000198689|Q92581-3|SLC9A6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3282470703125 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 124.68 1 120.08 119.58 120.58 -4.5984 0 0 0 0.19646 1 24588 24588 1.2148 0.94944 1 24192 7472 15911 15917 23950 23950 0.06935175545504535 KQLHAGSLV 9 Unmodified _KQLHAGSLV_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.1802673339844 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 114.37 1 114.37 113.87 114.87 0 0 0 0 0.23508 1 22500 22500 2.7352 0 1 24193 2941 15912 15918 23951 23951 0.07245180025722675 KQLHAGSLV 9 Unmodified _KQLHAGSLV_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.19061279296875 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 75.674 1 72.259 71.759 72.759 -3.4151 0 0 0 0.23508 1 14760 14760 2.7352 0 1 24194 2941 15912 15918 23952 23952 0.07245180025722675 KQLHAGSLV 9 Unmodified _KQLHAGSLV_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.1971130371094 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 78.04 1 74.577 74.077 75.077 -3.4633 0 0 0 0.23508 1 15239 15239 2.7352 0 1 24195 2941 15912 15918 23953 23953 0.07245180025722675 KQLHAGSLV 9 Unmodified _KQLHAGSLV_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.1700744628906 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 111.62 1 107.2 106.7 107.7 -4.4231 0 0 0 0.23508 1 21996 21996 2.7352 0 1 24196 2941 15912 15918 23954 23954 0.07245180025722675 KQLHAGSLV 9 Unmodified _KQLHAGSLV_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.22723388671875 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 70.358 1 66.891 66.391 67.391 -3.467 0 0 0 0.23508 1 13323 13323 2.7352 0 1 24197 2941 15912 15918 23955 23955 0.07245180025722675 KQLLHSKVI 9 Unmodified _KQLLHSKVI_ 0 0 0 REV__nc|ENSG00000204084|P32019-4|INPP5B REV__nc|ENSG00000204084|P32019-4|INPP5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2755126953125 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 164.4 1 164.4 163.9 164.9 0 0 0 0 0.23508 1 33243 33243 10.824 0.75 1 + 24198 24237 15913 15919 23956 23956 0.1408658801931324 KQLLVILLTY 10 Unmodified _KQLLVILLTY_ 0 0 0 ENSG00000172817|ENST00000310193|CYP7B1 ENSG00000172817|ENST00000310193|CYP7B1 ENSG00000172817|ENST00000310193|CYP7B1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2813720703125 2 602.389199 1202.76385 NaN NaN NaN NaN NaN NaN NaN 81.045 1 77.488 76.988 77.988 -3.557 0 0 0 0.22588 1 15824 15824 1.6526 0.17072 1 24199 6243 15914 15920 23957 23957 0.17057467681911476 KQLPVAAQT 9 Unmodified _KQLPVAAQT_ 0 0 0 REV__RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant REV__RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.2012939453125 3 319.190553 954.549831 NaN NaN NaN NaN NaN NaN NaN 124.55 1 124.55 124.05 125.05 0 0 0 0 0.23508 1 24562 24562 0.26902 0 1 + 24200 24543 15915 15921 23958 23958 0.07073760305831911 KQLPVAAQT 9 Unmodified _KQLPVAAQT_ 0 0 0 REV__RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant REV__RABGGTA|p.P160Lfs*5|1|0.17|ENSG00000100949|chr14:24269643-24269643|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.189453125 3 319.190553 954.549831 NaN NaN NaN NaN NaN NaN NaN 91.85 1 88.042 87.542 88.542 -3.8083 0 0 0 0.23508 1 17590 17590 0.26902 0 1 + 24201 24543 15915 15921 23959 23959 0.07073760305831911 KQLQLTTVR 9 Unmodified _KQLQLTTVR_ 0 0 0 nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF;PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant;nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1;PGAP1|p.K353Sfs*13|1|0.37|ENSG00000197121|chr2:196892376-196892377|TT/-|frameshift_variant;nc|ENSG00000197121|Q75T13-3|PGAP1 nc|ENSG00000197121|Q75T13-4|PGAP1 nc|ENSG00000197121|Q75T13-4|PGAP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7708129882812 2 543.835123 1085.65569 NaN NaN NaN NaN NaN NaN NaN 22.963 1 21.41 20.91 21.91 -1.5532 0 0 0 0.23508 1 3944 3944 5.2969 0 1 24202 7331 15916 15922 23960 23960 0.11629096151295926 KQMKGRPSL 9 Unmodified _KQMKGRPSL_ 0 0 0 ENSG00000078114|ENST00000377122|NEBL ENSG00000078114|ENST00000377122|NEBL ENSG00000078114|ENST00000377122|NEBL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.276611328125 2 522.802768 1043.59098 0.19436 0.00010161 0.29823 0.00015592 0.4926 0.00025753 523.3030786772663 137.28 0.31053 137.28 137.1 137.41 0 12 8 2 0 0 0 0.56623 1 27206 27206 34.402 9.0024 1 2691500 24203 1568 15917 15923 23961 23961 0.07093198073698659 KQNAEASPA 9 Unmodified _KQNAEASPA_ 0 0 0 REV__ACTRT2|p.D336Tfs*16|1|0.26|ENSG00000169717|chr1:3022686-3022686|C/-|frameshift_variant REV__ACTRT2|p.D336Tfs*16|1|0.26|ENSG00000169717|chr1:3022686-3022686|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.230224609375 2 458.230156 914.445759 0.30863 0.00014142 0.016522 7.5709E-06 0.32515 0.00014899 458.2301580760358 27.92 0.48119 27.92 27.631 28.113 0 30 13 3 0 0 0 0.46882 1 4953 4953 21.537 0 1 3567100 + 24204 12930 15918 15924 23962 23962 -0.014885665216752386 KQNKMLKKDK 10 Unmodified _KQNKMLKKDK_ 0 0 0 PTEN|p.N323Kfs*2|1|0.2|ENSG00000171862|chr10:87961054-87961055|-/A|frameshift_variant;PTEN|p.N323Mfs*21|1|0.28|ENSG00000171862|chr10:87961055-87961055|A/-|frameshift_variant;PTEN|p.Y346Kfs*3|1|0.42|ENSG00000171862|chr10:87965296-87965305|TACTTCACAA/-|frameshift_variant;PTEN|p.T350Nfs*11|1|0.35|ENSG00000171862|chr10:87965303-87965304|-/A|frameshift_variant;ENSG00000171862|ENST00000371953|PTEN;ENST00000532280.1_1_9:33675440-33676694:-|nuORF;nc|ENSG00000171862|P60484-2|PTEN PTEN|p.N323Kfs*2|1|0.2|ENSG00000171862|chr10:87961054-87961055|-/A|frameshift_variant PTEN|p.N323Kfs*2|1|0.2|ENSG00000171862|chr10:87961054-87961055|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7730102539062 2 630.876465 1259.73838 0.40797 0.00025738 -1.6562 -0.0010449 -1.2482 -0.00078749 630.8762643792204 151.48 0.16956 151.48 151.41 151.58 0 5 4 2 0 0 0 1.1216 1 30355 30355 1.0651 0.79976 1 1157600 24205 6183 15919 15925 23963 23963 0.11889669887796117 KQPKAMLF 8 Unmodified _KQPKAMLF_ 0 0 0 REV__CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant REV__CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.777099609375 2 481.778231 961.541908 NaN NaN NaN NaN NaN NaN NaN 156.15 1 150.86 150.36 151.36 -5.2854 0 0 0 0.2343 1 30290 30290 1.4551 0 1 + 24206 13632 15920 15926 23964 23964 0.059599097847240046 KQQAPPPPP 9 Unmodified _KQQAPPPPP_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2431945800781 2 480.269084 958.523616 0.12425 5.9673E-05 0.22506 0.00010809 0.34931 0.00016776 480.2691276392851 40.021 2.0358 40.021 39.477 41.513 0 104 57 3 0 0 0 0.25702 1 7405 7405 34.102 1.3168 1 11984000 24207 3357 15921 15927 23965 23965 0.042694911343687636 KQQAPPPPP 9 Unmodified _KQQAPPPPP_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25250244140625 2 480.269084 958.523616 -0.076091 -3.6544E-05 0.96467 0.0004633 0.88858 0.00042676 480.2694604329405 43.06 2.0416 40.341 39.877 41.918 -2.7191 118 57 3 0 0 0 0.12183 2 8068 8027;8068 48.346 12.219 1 20784000 24208 3357 15921 15927 23966;23967 23967 0.042694911343687636 KQQAPPPPP 9 Unmodified _KQQAPPPPP_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2480163574219 2 480.269084 958.523616 -0.031879 -1.5311E-05 0.95668 0.00045946 0.9248 0.00044415 480.26942367588686 43.055 2.1728 40.404 39.883 42.056 -2.651 122 61 3 0 0 0 0.16442 1 7731 7731 42.095 2.1449 1 18054000 24209 3357 15921 15927 23968 23968 0.042694911343687636 KQQAPPPPP 9 Unmodified _KQQAPPPPP_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2419738769531 2 480.269084 958.523616 -0.064894 -3.1167E-05 1.0089 0.00048456 0.94403 0.00045339 480.2694851080013 43.032 1.9197 40.426 39.896 41.816 -2.606 110 54 3 0 0 0 0.16442 2 7753 7747;7753 42.095 5.9675 1 11693000 24210 3357 15921 15927 23969;23970 23970 0.042694911343687636 KQRFNWRRRDW 11 Unmodified _KQRFNWRRRDW_ 0 0 0 REV__ENST00000448841.5_1_10:104575113-104575296:+|nuORF REV__ENST00000448841.5_1_10:104575113-104575296:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 550.2323608398438 3 549.96243 1646.86546 NaN NaN NaN NaN NaN NaN NaN 68.273 1 64.737 64.237 65.237 -3.5362 0 0 0 0.23698 1 12827 12827 0.094841 0 1 + 24211 21781 15922 15928 23971 23971 0.06790151876998607 KQRIARLLE 9 Unmodified _KQRIARLLE_ 0 0 0 REV__ENST00000572240.5_1_16:3078109-3079857:-|nuORF REV__ENST00000572240.5_1_16:3078109-3079857:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 376.1196594238281 3 376.240018 1125.69823 NaN NaN NaN NaN NaN NaN NaN 23.57 1 21.782 21.282 22.282 -1.7886 0 0 0 0.23508 1 3797 3797 1.0715 0.3738 1 + 24212 17480 15923 15929 23972 23972 0.14040491279570233 KQRLENRFYRR 11 Unmodified _KQRLENRFYRR_ 0 0 0 PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant;ENSG00000146247|ENST00000275034|PHIP PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2783813476562 3 522.630569 1564.86988 -0.10982 -5.7394E-05 -3.48 -0.0018187 -3.5898 -0.0018761 522.628792487007 149.06 0.1778 144.35 144.19 144.36 -4.7095 5 4 2 0 0 0 0.96205 1 29597 29597 1.0136 0.93022 1 1330800 24213 4647 15924 15930 23973 23973 0.11003616299922214 KQRQRERQKAR 11 Unmodified _KQRQRERQKAR_ 0 0 0 REV__ENST00000509702.5_1_4:23766811-23826805:-|nuORF REV__ENST00000509702.5_1_4:23766811-23826805:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 495.28143310546875 3 495.294068 1482.86037 NaN NaN NaN NaN NaN NaN NaN 62.528 1 62.528 62.028 63.028 0 0 0 0 0.22632 1 12008 12008 0.172 0 1 + 24214 15178 15925 15931 23974 23974 0.13825848014403164 KQRRRRYGQKK 11 Unmodified _KQRRRRYGQKK_ 0 0 0 nc|ENSG00000074696|Q9P035-2|HACD3;ENSG00000074696|ENST00000261875|HACD3 nc|ENSG00000074696|Q9P035-2|HACD3 nc|ENSG00000074696|Q9P035-2|HACD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 501.6558532714844 3 501.974558 1502.90185 NaN NaN NaN NaN NaN NaN NaN 164.12 1 164.12 163.62 164.62 0 0 0 0 0.23698 1 33153 33153 1.2148 0.76031 1 24215 1501 15926 15932 23975 23975 0.17051028773721555 KQRYEKHY 8 Unmodified _KQRYEKHY_ 0 0 0 REV__ENST00000402913.2_1_X:26704220-26705692:+|nuORF REV__ENST00000402913.2_1_X:26704220-26705692:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.32861328125 2 576.301447 1150.58834 NaN NaN NaN NaN NaN NaN NaN 133.25 1 128.45 127.95 128.95 -4.7992 0 0 0 0.23487 1 25647 25647 0.68139 0.416 1 + 24216 21367 15927 15933 23976 23976 0.019070659403723766 KQSSVAEEV 9 Unmodified _KQSSVAEEV_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.2298278808594 2 488.750921 975.48729 0.46876 0.00022911 -0.29987 -0.00014656 0.16889 8.2547E-05 488.75071791648924 29.383 0.3881 27.491 27.263 27.651 -1.8928 13 10 2 0 0 0 0.35556 1 5003 5003 12.241 6.0349 1 748630 24217 1943 15928 15934 23977 23977 -0.0014343055298695617 KQSSVAEEV 9 Unmodified _KQSSVAEEV_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 488.750921 975.48729 0.74362 0.00036345 -0.48107 -0.00023512 0.26255 0.00012832 488.75070269755497 29.497 0.31663 27.541 27.338 27.655 -1.9561 0.025255 -8.6742E-05 NaN 12.241 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 780890 24218 1943 15928 15934 -0.0014343055298695617 KQSWPPPP 8 Unmodified _KQSWPPPP_ 0 0 0 REV__ENST00000579396.1_1_17:10599052-10600824:-|nuORF REV__ENST00000579396.1_1_17:10599052-10600824:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 469.2343444824219 2 468.750527 935.486502 0.03286 1.5403E-05 -2.5373 -0.0011894 -2.5044 -0.001174 468.74830692460887 57.226 0.6264 54.037 53.794 54.42 -3.1895 21 17 2 0 0 0 0.88997 1 10573 10573 1.7423 0 1 826950 + 24219 16149 15929 15935 23978 23978 0.01617819588614111 KQTALVELLK 10 Unmodified _KQTALVELLK_ 0 0 0 CON__P02769 CON__P02769 CON__P02769 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2107849121094 3 381.576296 1141.70706 0.087763 3.3488E-05 -0.097855 -3.7339E-05 -0.010092 -3.8509E-06 381.57618201906246 106.66 0.60518 106.66 106.33 106.93 0 24 16 2 0 0 0 1.1276 1 20982 20982 6.6304 6.5665 1 1465800 + 24220 656 15930 15936 23979 23979 0.14187420125381323 KQTALVELLK 10 Unmodified _KQTALVELLK_ 0 0 0 CON__P02769 CON__P02769 CON__P02769 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.22222900390625 3 381.576296 1141.70706 -0.19606 -7.4811E-05 0.18771 7.1626E-05 -0.0083466 -3.1848E-06 381.57625078274543 110.08 0.37944 105.63 105.55 105.93 -4.4518 18 10 2 0 0 0 0.71771 1 21139 21139 19.144 12.107 1 1995000 + 24221 656 15930 15936 23980 23980 0.14187420125381323 KQTALVELLK 10 Unmodified _KQTALVELLK_ 0 0 0 CON__P02769 CON__P02769 CON__P02769 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 381.576296 1141.70706 -0.61536 -0.00023481 0.73275 0.0002796 0.11739 4.4794E-05 381.57661886875036 110.05 0.41439 105.67 105.48 105.89 -4.3776 0.018686 0.00032693 NaN 19.144 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1624400 + 24222 656 15930 15936 0.14187420125381323 KQTLCFVAAT 10 Unmodified _KQTLCFVAAT_ 0 0 0 REV__ENSG00000070601|ENST00000377765|FRMPD1 REV__ENSG00000070601|ENST00000377765|FRMPD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.21221923828125 3 361.195198 1080.56377 NaN NaN NaN NaN NaN NaN NaN 70.897 1 67.648 67.148 68.148 -3.2492 0 0 0 0.22588 1 13802 13802 3.3196 1.0369 1 + 24223 14260 15931 15937 23981 23981 0.026706697426334358 KRAAKRLL 8 Unmodified _KRAAKRLL_ 0 0 0 REV__ENSG00000283787|ENST00000640310|PRR33 REV__ENSG00000283787|ENST00000640310|PRR33 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7351379394531 2 478.329811 954.645068 NaN NaN NaN NaN NaN NaN NaN 158.71 1 158.71 158.21 159.21 0 0 0 0 0.23664 1 31866 31866 3.2813 0 1 + 24224 19962 15932 15938 23982 23982 0.16593158287548704 KRAIRTKKK 9 Unmodified _KRAIRTKKK_ 0 0 0 REV__nc|ENSG00000079841|Q86UR5-4|RIMS1 REV__nc|ENSG00000079841|Q86UR5-4|RIMS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 564.88671875 2 564.888024 1127.7615 NaN NaN NaN NaN NaN NaN NaN 179.28 1 179.28 178.78 179.78 0 0 0 0 0.19626 1 37139 37139 0.0033805 0 1 + 24225 14403 15933 15939 23983 23983 0.20272476787431515 KRCNGFWYC 9 Unmodified _KRCNGFWYC_ 0 0 0 REV__ENST00000360004.5_2_6:32546689-32546866:-|nuORF REV__ENST00000360004.5_2_6:32546689-32546866:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2578125 2 588.757504 1175.50045 0.46181 0.0002719 -1.0314 -0.00060722 -0.56955 -0.00033533 588.7584205232347 38.125 0.64052 35.683 35.484 36.125 -2.4419 43 17 4 0 0 0 0.67531 1 6811 6811 7.9102 2.1783 1 3575100 + 24226 20859 15934 15940 23984 23984 -0.08027594246254921 KRCNGFWYC 9 Unmodified _KRCNGFWYC_ 0 0 0 REV__ENST00000360004.5_2_6:32546689-32546866:-|nuORF REV__ENST00000360004.5_2_6:32546689-32546866:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 588.757504 1175.50045 0.07369 4.3386E-05 -0.040821 -2.4033E-05 0.03287 1.9352E-05 589.2582103992354 38.368 0.14022 35.819 35.733 35.873 -2.5491 0.068056 0.00077289 NaN 7.9102 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1190200 + 24227 20859 15934 15940 -0.08027594246254921 KRCNGFWYC 9 Unmodified _KRCNGFWYC_ 0 0 0 REV__ENST00000360004.5_2_6:32546689-32546866:-|nuORF REV__ENST00000360004.5_2_6:32546689-32546866:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 588.757504 1175.50045 0.46181 0.0002719 -1.0314 -0.00060722 -0.56955 -0.00033533 588.7584205232347 38.125 0.64052 35.683 35.484 36.125 -2.4419 -0.068056 -0.00039349 NaN 7.9102 43 17 4 NaN NaN NaN NaN 0 NaN NaN 0 3575100 + 24228 20859 15934 15940 -0.08027594246254921 KRDGRYIYYL 10 Unmodified _KRDGRYIYYL_ 0 0 0 ENSG00000124596|ENST00000424266|OARD1;ENST00000465893.1_1_6:41037763-41039373:-|nuORF ENSG00000124596|ENST00000424266|OARD1 ENSG00000124596|ENST00000424266|OARD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.2557067871094 3 449.5787 1345.71427 0.28481 0.00012805 -0.3891 -0.00017493 -0.10429 -4.6887E-05 449.5785384503701 90.902 0.62737 86.808 86.498 87.125 -4.0946 34 17 3 0 0 0 1.0247 1 17322 17322 37.771 33.168 1 1489600 24229 3325 15935 15941 23985 23985 0.055241527257976486 KRDGRYIYYL 10 Unmodified _KRDGRYIYYL_ 0 0 0 ENSG00000124596|ENST00000424266|OARD1;ENST00000465893.1_1_6:41037763-41039373:-|nuORF ENSG00000124596|ENST00000424266|OARD1 ENSG00000124596|ENST00000424266|OARD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 449.5787 1345.71427 0.07948 3.5732E-05 0.063897 2.8727E-05 0.14338 6.4459E-05 449.5787065827716 90.636 0.72655 86.858 86.502 87.229 -3.7779 0.025234 0.00030935 NaN 37.771 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1474100 24230 3325 15935 15941 0.055241527257976486 KRDSFLKRL 9 Unmodified _KRDSFLKRL_ 0 0 0 nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7171630859375 3 388.240018 1161.69823 0.11666 4.529E-05 -0.27627 -0.00010726 -0.15961 -6.1968E-05 388.23987109991396 42.115 0.80329 42.115 41.653 42.456 0 56 22 3 0 0 0 0.36193 1 7870 7870 40.725 12.23 1 2140500 24231 3082 15936 15942 23986 23986 0.12384491279567555 KRDSFLKRL 9 Unmodified _KRDSFLKRL_ 0 0 0 nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71624755859375 3 388.240018 1161.69823 -0.23382 -9.0777E-05 0.13822 5.3663E-05 -0.095597 -3.7115E-05 388.24005392346015 44.875 0.77795 42.085 41.642 42.42 -2.79 52 21 3 0 0 0 0.44182 1 8416 8416 44.392 27.826 1 2394200 24232 3082 15936 15942 23987 23987 0.12384491279567555 KRDSFLKRL 9 Unmodified _KRDSFLKRL_ 0 0 0 nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7164001464844 3 388.240018 1161.69823 -0.034933 -1.3562E-05 -0.10464 -4.0624E-05 -0.13957 -5.4187E-05 388.23993093868927 44.807 0.91795 42.041 41.595 42.513 -2.7661 52 25 3 0 0 0 0.79696 1 8081 8081 19.626 7.4512 1 1900200 24233 3082 15936 15942 23988 23988 0.12384491279567555 KRDSFLKRL 9 Unmodified _KRDSFLKRL_ 0 0 0 nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7168884277344 3 388.240018 1161.69823 -0.73327 -0.00028469 0.44856 0.00017415 -0.28471 -0.00011054 388.2401951862816 44.61 0.9474 41.862 41.499 42.446 -2.7475 49 26 2 0 0 0 0.47592 1 8090 8090 17.113 14.614 1 1385700 24234 3082 15936 15942 23989 23989 0.12384491279567555 KREEKIEDSLF 11 Unmodified _KREEKIEDSLF_ 0 0 0 REV__ENST00000573406.1_1_17:5338186-5342438:-|nuORF REV__ENST00000573406.1_1_17:5338186-5342438:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2489318847656 3 465.248908 1392.72489 NaN NaN NaN NaN NaN NaN NaN 122.95 1 122.95 122.45 123.45 0 0 0 0 0.22632 1 24232 24232 3.0723 1.1659 1 + 24235 15130 15937 15943 23990 23990 0.04424090589577645 KREELWPE 8 Unmodified _KREELWPE_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7787475585938 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 160.12 1 154.89 154.39 155.39 -5.2299 0 0 0 0.23782 1 31086 31086 0.063987 0 1 + 24236 15903 15938 15944 23991 23991 0.011205549548776617 KREFELFLRW 10 Unmodified _KREFELFLRW_ 0 0 0 REV__nc|ENSG00000198901|O43663-3|PRC1 REV__nc|ENSG00000198901|O43663-3|PRC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 475.26776123046875 3 475.266345 1422.7772 NaN NaN NaN NaN NaN NaN NaN 150.91 1 146.17 145.67 146.67 -4.7323 0 0 0 2.8426 1 29974 29974 0.51642 0.49021 1 + 24237 19478 15939 15945 23992 23992 0.08272718513831023 KREQRKKKYQK 11 Unmodified _KREQRKKKYQK_ 0 0 0 MPHOSPH10|p.R578Q|1|0.1|ENSG00000124383|chr2:71149290-71149290|G/A|missense_variant MPHOSPH10|p.R578Q|1|0.1|ENSG00000124383|chr2:71149290-71149290|G/A|missense_variant MPHOSPH10|p.R578Q|1|0.1|ENSG00000124383|chr2:71149290-71149290|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2154846191406 4 380.734946 1518.91068 -0.26762 -0.00010189 0.53484 0.00020363 0.26723 0.00010174 380.7352088863932 11.973 0.10509 11.973 11.893 11.998 0 6 2 3 0 0 0 0.66298 1 1637 1637 0 0 1 2182100 24238 12158 15940 15946 23993 23993 0.17197957619555382 KREQRKKKYQK 11 Unmodified _KREQRKKKYQK_ 0 0 0 MPHOSPH10|p.R578Q|1|0.1|ENSG00000124383|chr2:71149290-71149290|G/A|missense_variant MPHOSPH10|p.R578Q|1|0.1|ENSG00000124383|chr2:71149290-71149290|G/A|missense_variant MPHOSPH10|p.R578Q|1|0.1|ENSG00000124383|chr2:71149290-71149290|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 380.734946 1518.91068 -0.26762 -0.00010189 0.53484 0.00020363 0.26723 0.00010174 380.7352088863932 11.973 0.10509 11.973 11.893 11.998 0 0 0 NaN 0 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 2182100 24239 12158 15940 15946 0.17197957619555382 KRFDHSEIYTY 11 Unmodified _KRFDHSEIYTY_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 487.1907653808594 3 486.905253 1457.69393 0.014114 6.872E-06 -0.27482 -0.00013381 -0.26071 -0.00012694 486.90504038153745 55.603 0.53438 55.603 55.302 55.836 0 28 14 3 0 0 0 0.60781 1 10588 10588 5.4027 3.9953 1 2995400 24240 3536 15941 15947 23994 23994 -0.016610627246564036 KRFDHSEIYTY 11 Unmodified _KRFDHSEIYTY_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 486.905253 1457.69393 0.05779 2.8138E-05 -0.37979 -0.00018492 -0.322 -0.00015678 486.9051039147629 58.801 0.56532 55.89 55.579 56.144 -2.9105 0.14491 -5.9595E-05 NaN 5.4027 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1738000 24241 3536 15941 15947 -0.016610627246564036 KRFDHSEIYTY 11 Unmodified _KRFDHSEIYTY_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 486.905253 1457.69393 0.22209 0.00010814 -0.23478 -0.00011432 -0.012694 -6.181E-06 486.9049515313036 58.979 0.42638 55.727 55.597 56.023 -3.2517 -0.017996 0.00015222 NaN 5.4027 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1150400 24242 3536 15941 15947 -0.016610627246564036 KRFDHSEIYTY 11 Unmodified _KRFDHSEIYTY_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 486.905253 1457.69393 -0.13298 -6.4751E-05 -0.49294 -0.00024001 -0.62592 -0.00030476 486.90515681700003 58.966 0.46084 55.76 55.503 55.963 -3.2052 0.015133 -0.00022487 NaN 5.4027 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1378000 24243 3536 15941 15947 -0.016610627246564036 KRFFEVRRV 9 Unmodified _KRFFEVRRV_ 0 0 0 ENST00000543425.1_1_12:124075023-124081273:+|nuORF;ENSG00000086598|ENST00000262225|TMED2 ENST00000543425.1_1_12:124075023-124081273:+|nuORF ENST00000543425.1_1_12:124075023-124081273:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16510009765625 4 309.938554 1235.72511 -0.2368 -7.3395E-05 0.21696 6.7245E-05 -0.019842 -6.1498E-06 309.9385911866429 43.385 0.54903 43.385 43.02 43.569 0 35 15 3 0 0 0 0.60489 2 8145 8145;8148 2.7352 2.3265 1 2445100 24244 1698 15942 15948 23995;23996 23995 0.11667599890733982 KRFFEVRRV 9 Unmodified _KRFFEVRRV_ 0 0 0 ENST00000543425.1_1_12:124075023-124081273:+|nuORF;ENSG00000086598|ENST00000262225|TMED2 ENST00000543425.1_1_12:124075023-124081273:+|nuORF ENST00000543425.1_1_12:124075023-124081273:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647644042969 4 309.938554 1235.72511 -0.78554 -0.00024347 0.76049 0.0002357 -0.025054 -7.7651E-06 309.93878349450034 46.354 0.59074 43.488 43.198 43.789 -2.8666 39 16 3 0 0 0 0.5428 3 8412 8412;8473;8474 4.897 4.725 1 1735900 24245 1698 15942 15948 23997;23998;23999 23997 0.11667599890733982 KRFFEVRRV 9 Unmodified _KRFFEVRRV_ 0 0 0 ENST00000543425.1_1_12:124075023-124081273:+|nuORF;ENSG00000086598|ENST00000262225|TMED2 ENST00000543425.1_1_12:124075023-124081273:+|nuORF ENST00000543425.1_1_12:124075023-124081273:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 309.938554 1235.72511 -0.30665 -9.5041E-05 0.24877 7.7102E-05 -0.05788 -1.7939E-05 309.93855274426005 46.411 0.62847 43.571 43.241 43.87 -2.8409 0.07937 -8.7472E-05 NaN 4.897 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3031800 24246 1698 15942 15948 0.11667599890733982 KRFFEVRRV 9 Unmodified _KRFFEVRRV_ 0 0 0 ENST00000543425.1_1_12:124075023-124081273:+|nuORF;ENSG00000086598|ENST00000262225|TMED2 ENST00000543425.1_1_12:124075023-124081273:+|nuORF ENST00000543425.1_1_12:124075023-124081273:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 309.938554 1235.72511 -0.0059346 -1.8394E-06 -0.051616 -1.5998E-05 -0.05755 -1.7837E-05 309.9384873371482 46.387 0.59194 43.522 43.275 43.867 -2.8653 0.030634 -0.00045987 NaN 4.897 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2354500 24247 1698 15942 15948 0.11667599890733982 KRFSGTVRL 9 Unmodified _KRFSGTVRL_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 355.1979675292969 3 355.217214 1062.62981 -0.048316 -1.7163E-05 -0.3748 -0.00013314 -0.42312 -0.0001503 355.2171927168136 41.614 0.63173 38.963 38.585 39.216 -2.651 45 17 4 0 0 0 0.074448 1 7458 7458 59.368 32.485 1 3211800 24248 7487 15943 15949 24000 24000 0.10100246699721538 KRFSGTVRL 9 Unmodified _KRFSGTVRL_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 355.217214 1062.62981 -0.14747 -5.2382E-05 0.20609 7.3206E-05 0.058623 2.0824E-05 355.2172465211193 39.125 0.55369 39.125 38.818 39.372 0 0.086175 -9.0317E-05 NaN 59.368 38 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3889700 24249 7487 15943 15949 0.10100246699721538 KRFSGTVRL 9 Unmodified _KRFSGTVRL_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 355.217214 1062.62981 -0.44598 -0.00015842 0.50613 0.00017979 0.060147 2.1365E-05 355.21734725730715 41.691 0.51738 39.056 38.78 39.297 -2.6348 0.017469 0.00022942 NaN 59.368 27 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3178300 24250 7487 15943 15949 0.10100246699721538 KRFSGTVRL 9 Unmodified _KRFSGTVRL_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 355.217214 1062.62981 -0.63945 -0.00022714 0.66512 0.00023626 0.025672 9.1192E-06 355.21742174541913 41.501 0.52455 39.011 38.743 39.268 -2.4896 -0.027666 0.00039885 NaN 59.368 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2706100 24251 7487 15943 15949 0.10100246699721538 KRFWCWQRPKY 11 Unmodified _KRFWCWQRPKY_ 0 0 0 ENST00000473990.1_1_7:24784179-24789393:-|nuORF;DFNA5|p.L158*|1|0.33|ENSG00000105928|chr7:24719150-24719150|A/-|frameshift_variant;DFNA5|p.A309Sfs*4|1|0.06|ENSG00000105928|chr7:24708192-24708193|-/T|frameshift_variant;ENST00000493723.5_1_7:24756537-24789393:-|nuORF;ENSG00000105928|ENST00000645220|GSDME ENST00000473990.1_1_7:24784179-24789393:-|nuORF ENST00000473990.1_1_7:24784179-24789393:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2784423828125 3 533.278479 1596.81361 NaN NaN NaN NaN NaN NaN NaN 69.91 1 66.33 65.83 66.83 -3.5798 0 0 0 0.22632 1 13170 13170 0.172 0 1 24252 821 15944 15950 24001 24001 0.03907272138872031 KRFWRSWRRVY 11 Unmodified _KRFWRSWRRVY_ 0 0 0 ENST00000496222.1_1_3:160156960-160167504:-|nuORF;ENST00000483754.1_1_3:160156960-160167537:-|nuORF ENST00000496222.1_1_3:160156960-160167504:-|nuORF ENST00000496222.1_1_3:160156960-160167504:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.76904296875 3 547.307537 1638.90078 0.089949 4.923E-05 1.4751 0.00080734 1.5651 0.00085657 547.3076212157464 137.43 0.17931 132.51 132.4 132.58 -4.9216 7 4 2 0 0 0 0.96225 1 26404 26404 0.45452 0.45452 1 948880 24253 10419 15945 15951 24002 24002 0.1068881440480709 KRGCMGGKL 9 Unmodified _KRGCMGGKL_ 0 0 0 REV__ENST00000521132.1_1_8:58132720-58132777:+|nuORF REV__ENST00000521132.1_1_8:58132720-58132777:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1741027832031 3 317.173852 948.499726 NaN NaN NaN NaN NaN NaN NaN 135.96 1 131.06 130.56 131.56 -4.8951 0 0 0 0.23508 1 26125 26125 1.0715 0 1 + 24254 22643 15946 15952 24003 24003 0.023416111047140475 KRGDVIYIL 9 Unmodified _KRGDVIYIL_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 3 359.553603 1075.63898 -0.25311 -9.1007E-05 0.22827 8.2074E-05 -0.024844 -8.9329E-06 359.55365937920106 118.76 1.3249 118.76 118.22 119.55 0 135 37 5 0 0 0 0.11828 2 23368 23368;23444 49.554 30.297 1 137640000 24255 981 15947 15953 24004;24005 24004 0.1041859526535518 KRGDVIYIL 9 Unmodified _KRGDVIYIL_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017517089844 3 359.553603 1075.63898 -0.054247 -1.9505E-05 0.054261 1.951E-05 1.3942E-05 5.0129E-09 359.55360695936395 122.53 1.5994 117.98 117.42 119.02 -4.5476 161 44 5 0 0 0 0.10699 3 24098 24098;24184;24271 53.404 30.668 1 175600000 24256 981 15947 15953 24006;24007;24008 24006 0.1041859526535518 KRGDVIYIL 9 Unmodified _KRGDVIYIL_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018737792969 3 359.553603 1075.63898 -0.38364 -0.00013794 0.36578 0.00013152 -0.017868 -6.4246E-06 359.5537258832123 122.45 2.0948 117.92 117.37 119.46 -4.5305 195 59 5 0 0 0 0.16539 2 23671 23671;23698 41.956 28.05 1 157830000 24257 981 15947 15953 24009;24010 24009 0.1041859526535518 KRGKVKGTQ 9 Unmodified _KRGKVKGTQ_ 0 0 0 nc|ENSG00000140285|P21781-2|FGF7;ENSG00000140285|ENST00000267843|FGF7 nc|ENSG00000140285|P21781-2|FGF7 nc|ENSG00000140285|P21781-2|FGF7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.5455627441406 3 334.545331 1000.61416 NaN NaN NaN NaN NaN NaN NaN 179.54 1 179.54 179.04 180.04 0 0 0 0 0.19631 1 37193 37193 0.20686 0 1 24258 4286 15948 15954 24011 24011 0.11387960182662482 KRGMKDKAI 9 Unmodified _KRGMKDKAI_ 0 0 0 REV__nc|ENSG00000143552|Q5VU65-2|NUP210L REV__nc|ENSG00000143552|Q5VU65-2|NUP210L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6923217773438 2 523.810593 1045.60663 NaN NaN NaN NaN NaN NaN NaN 116.73 1 112.24 111.74 112.74 -4.486 0 0 0 0.19646 1 23013 23013 0.37959 0.31572 1 + 24259 16736 15949 15955 24012 24012 0.08565484590712913 KRGPLFSH 8 Unmodified _KRGPLFSH_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6;nc|ENSG00000141424|Q13433-2|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1848449707031 3 314.515371 940.524284 -0.44464 -0.00013985 0.27184 8.5499E-05 -0.1728 -5.4348E-05 314.51539512124526 24.482 0.57972 24.482 24.201 24.781 0 42 16 4 0 0 0 8448 2 4207 4207;4212 60.074 36.284 1 8352200 24260 4359 15950 15956 24013;24014 24013 0.05164330574086762 KRGVLLML 8 Unmodified _KRGVLLML_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;ENST00000492091.1_1_2:136609063-136622601:-|nuORF ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2462158203125 2 465.301873 928.589193 0.22862 0.00010638 -0.41091 -0.0001912 -0.18229 -8.4821E-05 465.30173544215603 126.47 0.42171 121.67 121.4 121.82 -4.7958 17 11 2 0 0 0 0.83238 1 24296 24296 27.088 20.883 1 884770 24261 1532 15951 15957 24015 24015 0.1220418905572842 KRHDRKEA 8 Unmodified _KRHDRKEA_ 0 0 0 REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1 REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.1908264160156 3 347.196701 1038.56827 NaN NaN NaN NaN NaN NaN NaN 57.569 1 54.675 54.175 55.175 -2.8944 0 0 0 0.21486 1 11050 11050 1.4819 0 1 + 24262 25189 15952 15958 24016 24016 0.05053315000418479 KRHWLRFFYLY 11 Unmodified _KRHWLRFFYLY_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3545532226562 2 814.94607 1627.87759 NaN NaN NaN NaN NaN NaN NaN 121.7 1 117.15 116.65 117.65 -4.5476 0 0 0 0.22632 1 23988 23988 0 0 1 24263 6763 15953 15959 24017 24017 0.08876375567501782 KRHWLRFFYLY 11 Unmodified _KRHWLRFFYLY_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7754516601562 3 543.633139 1627.87759 NaN NaN NaN NaN NaN NaN NaN 109.13 1 104.94 104.44 105.44 -4.1826 0 0 0 0.22632 1 21000 21000 0.026206 0 1 24264 6763 15953 15959 24018 24018 0.08876375567501782 KRIDIIHNL 9 Unmodified _KRIDIIHNL_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2;YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.567626953125 3 374.564502 1120.67168 0.20907 7.8309E-05 -0.485 -0.00018167 -0.27594 -0.00010336 374.5643876504725 80.584 1.2288 80.584 80.039 81.268 0 83 34 4 0 0 0 0.069179 2 15659 15659;15696 36.127 7.0454 1 11802000 24265 5474 15954 15960 24019;24020 24019 0.11616802388221004 KRIDIIHNL 9 Unmodified _KRIDIIHNL_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2;YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2110290527344 3 374.564502 1120.67168 -0.25014 -9.3692E-05 -0.062707 -2.3488E-05 -0.31284 -0.00011718 374.56452043113364 83.338 0.98569 79.73 79.266 80.252 -3.6079 78 27 4 0 0 0 0.15889 1 16348 16348 22.736 20.105 1 8790200 24266 5474 15954 15960 24021 24021 0.11616802388221004 KRIDIIHNL 9 Unmodified _KRIDIIHNL_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2;YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21112060546875 3 374.564502 1120.67168 0.13174 4.9347E-05 -0.26057 -9.76E-05 -0.12882 -4.8253E-05 374.5644276007911 83.61 0.88623 79.736 79.362 80.249 -3.8736 68 24 4 0 0 0 0.15889 1 15930 15930 30.703 14.429 1 9463100 24267 5474 15954 15960 24022 24022 0.11616802388221004 KRIDIIHNL 9 Unmodified _KRIDIIHNL_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2;YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2177734375 3 374.564502 1120.67168 -0.75658 -0.00028339 0.739 0.0002768 -0.017584 -6.5865E-06 374.56475912672835 83.524 1.0732 79.826 79.319 80.392 -3.6985 82 30 4 0 0 0 0.15889 1 15912 15912 22.736 8.3309 1 6712700 24268 5474 15954 15960 24023 24023 0.11616802388221004 KRIHRKRHRF 10 Unmodified _KRIHRKRHRF_ 0 0 0 REV__ENSG00000186496|ENST00000589332|ZNF396 REV__ENSG00000186496|ENST00000589332|ZNF396 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73309326171875 3 478.632355 1432.87524 -0.38715 -0.0001853 1.3282 0.00063572 0.94104 0.00045041 478.96741104084595 18.321 0.20287 17.048 16.93 17.133 -1.2722 12 5 3 0 0 0 0.76775 1 2725 2725 0.15932 0.064481 1 637170 + 24269 19035 15955 15961 24024 24024 0.17611384673045904 KRIHRKRHRF 10 Unmodified _KRIHRKRHRF_ 0 0 0 REV__ENSG00000186496|ENST00000589332|ZNF396 REV__ENSG00000186496|ENST00000589332|ZNF396 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 478.632355 1432.87524 -0.14428 -6.9058E-05 0.84529 0.00040459 0.70101 0.00033553 478.6324353850684 17.031 0.17658 17.031 16.924 17.1 0 -0.035004 -0.00041473 NaN 0.15932 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 236550 + 24270 19035 15955 15961 0.17611384673045904 KRIKARNRLA 10 Unmodified _KRIKARNRLA_ 0 0 0 ENSG00000151640|ENST00000338492|DPYSL4 ENSG00000151640|ENST00000338492|DPYSL4 ENSG00000151640|ENST00000338492|DPYSL4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 613.388916015625 2 613.40183 1224.78911 NaN NaN NaN NaN NaN NaN NaN 166.03 1 161.24 160.74 161.74 -4.7898 0 0 0 2.8426 1 33302 33302 0.69767 0.69429 1 24271 4879 15956 15962 24025 24025 0.1857038004768583 KRILIKRLY 9 Unmodified _KRILIKRLY_ 0 0 0 REV__ENSG00000180251|ENST00000295269|SLC9A4 REV__ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.284423828125 2 601.908425 1201.8023 1.2787 0.00076967 4.2327 0.0025477 5.5114 0.0033174 601.9104648607724 118.76 0.17981 114.25 114.18 114.36 -4.502 5 4 2 0 0 0 0.82535 1 23433 23433 0.6015 0 1 949450 + 24272 18679 15957 15963 24026 24026 0.20946818107086074 KRILIKRLY 9 Unmodified _KRILIKRLY_ 0 0 0 REV__ENSG00000180251|ENST00000295269|SLC9A4 REV__ENSG00000180251|ENST00000295269|SLC9A4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.27490234375 2 601.908425 1201.8023 NaN NaN NaN NaN NaN NaN NaN 69.644 1 66.064 65.564 66.564 -3.5798 0 0 0 0.23508 1 13114 13114 0.6015 0 1 + 24273 18679 15957 15963 24027 24027 0.20946818107086074 KRILIKRLY 9 Unmodified _KRILIKRLY_ 0 0 0 REV__ENSG00000180251|ENST00000295269|SLC9A4 REV__ENSG00000180251|ENST00000295269|SLC9A4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2903442382812 2 601.908425 1201.8023 0.42781 0.0002575 3.7183 0.0022381 4.1462 0.0024956 602.4126918332197 149.8 0.17644 144.68 144.54 144.71 -5.1204 6 4 2 0 0 0 0.63929 1 29014 29014 0.40827 0 1 2821200 + 24274 18679 15957 15963 24028 24028 0.20946818107086074 KRIRYFYRIWK 11 Unmodified _KRIRYFYRIWK_ 0 0 0 REV__FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant REV__FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3849487304688 2 814.980444 1627.94634 NaN NaN NaN NaN NaN NaN NaN 162.89 1 162.89 162.39 163.39 0 0 0 0 0.23698 1 32787 32787 0.26902 0.26902 1 + 24275 23514 15958 15964 24029 24029 0.1574803986718507 KRIVRKGLVI 10 Unmodified _KRIVRKGLVI_ 0 0 0 REV__ENST00000495446.1_1_7:48146453-48147951:+|nuORF REV__ENST00000495446.1_1_7:48146453-48147951:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 591.4844360351562 2 591.413875 1180.8132 NaN NaN NaN NaN NaN NaN NaN 163.36 1 158.31 157.81 158.81 -5.0446 0 0 0 2.8426 1 31786 31786 1.9064 1.2087 1 + 24276 18854 15959 15965 24030 24030 0.230022204813622 KRKEKRRRRKK 11 Unmodified _KRKEKRRRRKK_ 0 0 0 ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6836547851562 3 523.685119 1568.03353 NaN NaN NaN NaN NaN NaN NaN 31.185 1 29.068 28.568 29.568 -2.1167 0 0 0 0.22632 1 5653 5653 0 0 1 24277 10361 15960 15966 24031 24031 0.2722325886145427 KRKEKRRRRKK 11 Unmodified _KRKEKRRRRKK_ 0 0 0 ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6842041015625 3 523.685119 1568.03353 NaN NaN NaN NaN NaN NaN NaN 15.791 1 14.569 14.069 15.069 -1.2219 0 0 0 0.22632 1 2236 2236 0.00056442 0 1 24278 10361 15960 15966 24032 24032 0.2722325886145427 KRKEKRRRRKK 11 Unmodified _KRKEKRRRRKK_ 0 0 0 ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6829833984375 3 523.685119 1568.03353 NaN NaN NaN NaN NaN NaN NaN 55.064 1 51.929 51.429 52.429 -3.1352 0 0 0 0.22632 1 10168 10168 0.00056442 0 1 24279 10361 15960 15966 24033 24033 0.2722325886145427 KRKEKRRRRKK 11 Unmodified _KRKEKRRRRKK_ 0 0 0 ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6854248046875 3 523.685119 1568.03353 NaN NaN NaN NaN NaN NaN NaN 117.36 1 112.75 112.25 113.25 -4.6106 0 0 0 0.22632 1 22521 22521 0.00056442 0 1 24280 10361 15960 15966 24034 24034 0.2722325886145427 KRKEKRRRRKK 11 Unmodified _KRKEKRRRRKK_ 0 0 0 ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.40771484375 2 785.02404 1568.03353 NaN NaN NaN NaN NaN NaN NaN 102.41 1 98.392 97.892 98.892 -4.0212 0 0 0 0.23698 1 19681 19681 1.3295 0 1 24281 10361 15960 15966 24035 24035 0.2722325886145427 KRKEKRRRRKK 11 Unmodified _KRKEKRRRRKK_ 0 0 0 ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6910400390625 3 523.685119 1568.03353 NaN NaN NaN NaN NaN NaN NaN 122.63 1 118.1 117.6 118.6 -4.5305 0 0 0 0.22632 1 23609 23609 0.00056442 0 1 24282 10361 15960 15966 24036 24036 0.2722325886145427 KRKEKRRRRKK 11 Unmodified _KRKEKRRRRKK_ 0 0 0 ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF ENST00000480732.2_1_1:78407858-78408185:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6841430664062 3 523.685119 1568.03353 NaN NaN NaN NaN NaN NaN NaN 172.8 1 167.92 167.42 168.42 -4.881 0 0 0 0.22632 1 34323 34323 0.00056442 0 1 24283 10361 15960 15966 24037 24037 0.2722325886145427 KRKFYLRKRKF 11 Unmodified _KRKFYLRKRKF_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4097290039062 2 785.496262 1568.97797 NaN NaN NaN NaN NaN NaN NaN 96.643 1 96.643 96.143 97.143 0 0 0 0 0.23698 1 18934 18934 0.30703 0.03801 1 24284 8872 15961 15967 24038 24038 0.21624032621139122 KRKFYLRKRKF 11 Unmodified _KRKFYLRKRKF_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.380859375 2 785.496262 1568.97797 NaN NaN NaN NaN NaN NaN NaN 139.9 1 139.9 139.4 140.4 0 0 0 0 0.22632 1 27826 27826 0.00056442 0.00056442 1 24285 8872 15961 15967 24039 24039 0.21624032621139122 KRKFYLRKRKF 11 Unmodified _KRKFYLRKRKF_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.39990234375 2 785.496262 1568.97797 NaN NaN NaN NaN NaN NaN NaN 145.54 1 145.54 145.04 146.04 0 0 0 0 0.22632 1 29088 29088 0.0059557 0.0053913 1 24286 8872 15961 15967 24040 24040 0.21624032621139122 KRKFYLRKRKF 11 Unmodified _KRKFYLRKRKF_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3806762695312 2 785.496262 1568.97797 NaN NaN NaN NaN NaN NaN NaN 99.259 1 95.127 94.627 95.627 -4.1326 0 0 0 0.22632 1 19496 19496 0.00056442 0 1 24287 8872 15961 15967 24041 24041 0.21624032621139122 KRKFYLRKRKF 11 Unmodified _KRKFYLRKRKF_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6884765625 3 523.999933 1568.97797 NaN NaN NaN NaN NaN NaN NaN 165.23 1 160.44 159.94 160.94 -4.7898 0 0 0 0.22632 1 33076 33076 0.094841 0 1 24288 8872 15961 15967 24042 24042 0.21624032621139122 KRKFYLRKRKF 11 Unmodified _KRKFYLRKRKF_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3931884765625 2 785.496262 1568.97797 NaN NaN NaN NaN NaN NaN NaN 144.26 1 139.19 138.69 139.69 -5.0671 0 0 0 0.22632 1 27824 27824 0.00056442 0.00056442 1 24289 8872 15961 15967 24043 24043 0.21624032621139122 KRKFYLRKRKF 11 Unmodified _KRKFYLRKRKF_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3841552734375 2 785.496262 1568.97797 NaN NaN NaN NaN NaN NaN NaN 150.45 1 145.25 144.75 145.75 -5.1994 0 0 0 0.22632 1 29156 29156 0.00056442 0.00056442 1 24290 8872 15961 15967 24044 24044 0.21624032621139122 KRKFYLRKRKF 11 Unmodified _KRKFYLRKRKF_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.396728515625 2 785.496262 1568.97797 0.33424 0.00026254 -1.7068 -0.0013407 -1.3726 -0.0010782 785.99452247518 144.02 0.17123 138.95 138.84 139.01 -5.0671 5 4 2 0 0 0 0.89136 1 27762 27762 0.00056442 0.00056442 1 4183400 24291 8872 15961 15967 24045 24045 0.21624032621139122 KRKFYLRKRKF 11 Unmodified _KRKFYLRKRKF_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4074096679688 2 785.496262 1568.97797 NaN NaN NaN NaN NaN NaN NaN 104.26 1 100.2 99.704 100.7 -4.0543 0 0 0 0.23698 1 20049 20049 0.35063 0.35063 1 24292 8872 15961 15967 24046 24046 0.21624032621139122 KRKFYLRKRKF 11 Unmodified _KRKFYLRKRKF_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3726196289062 2 785.496262 1568.97797 NaN NaN NaN NaN NaN NaN NaN 150.92 1 145.74 145.24 146.24 -5.1759 0 0 0 0.23698 1 29253 29253 0 0 1 24293 8872 15961 15967 24047 24047 0.21624032621139122 KRKFYLRKRKF 11 Unmodified _KRKFYLRKRKF_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4016723632812 2 785.496262 1568.97797 NaN NaN NaN NaN NaN NaN NaN 174.09 1 169.2 168.7 169.7 -4.8916 0 0 0 0.22632 1 34640 34640 0.00056442 0.00056442 1 24294 8872 15961 15967 24048 24048 0.21624032621139122 KRKGQVIQF 9 Unmodified _KRKGQVIQF_ 0 0 0 ENST00000493084.1_1_8:87029298-87029352:+|nuORF;ENST00000473882.1_1_11:25610023-25610134:-|nuORF;ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL;ENST00000490372.1_1_5:18049936-18049978:+|nuORF;ENST00000497944.1_1_15:75478994-75479102:-|nuORF ENST00000493084.1_1_8:87029298-87029352:+|nuORF ENST00000493084.1_1_8:87029298-87029352:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 368.5270080566406 3 368.560981 1102.66111 0.058091 2.141E-05 0.034825 1.2835E-05 0.092916 3.4245E-05 368.560935830912 43.615 0.52145 43.615 43.362 43.883 0 32 14 3 0 0 0 0.1428 1 8176 8176 37.075 35.86 1 1790600 24295 5635 15962 15968 24049 24049 0.11388819733770106 KRKGQVIQF 9 Unmodified _KRKGQVIQF_ 0 0 0 ENST00000493084.1_1_8:87029298-87029352:+|nuORF;ENST00000473882.1_1_11:25610023-25610134:-|nuORF;ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL;ENST00000490372.1_1_5:18049936-18049978:+|nuORF;ENST00000497944.1_1_15:75478994-75479102:-|nuORF ENST00000493084.1_1_8:87029298-87029352:+|nuORF ENST00000493084.1_1_8:87029298-87029352:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 368.560981 1102.66111 -0.26784 -9.8716E-05 0.2356 8.6834E-05 -0.032238 -1.1882E-05 368.56102295372693 46.121 0.44728 43.28 43.003 43.45 -2.8409 -0.068022 -0.00013343 NaN 37.075 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 891150 24296 5635 15962 15968 0.11388819733770106 KRKGQVIQF 9 Unmodified _KRKGQVIQF_ 0 0 0 ENST00000493084.1_1_8:87029298-87029352:+|nuORF;ENST00000473882.1_1_11:25610023-25610134:-|nuORF;ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL;ENST00000490372.1_1_5:18049936-18049978:+|nuORF;ENST00000497944.1_1_15:75478994-75479102:-|nuORF ENST00000493084.1_1_8:87029298-87029352:+|nuORF ENST00000493084.1_1_8:87029298-87029352:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 368.560981 1102.66111 -0.78774 -0.00029033 0.79336 0.0002924 0.0056213 2.0718E-06 368.56124685790235 46.015 0.76001 43.149 42.747 43.507 -2.8666 -0.19916 0.00048327 NaN 37.075 31 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1445400 24297 5635 15962 15968 0.11388819733770106 KRKKKGTL 8 Unmodified _KRKKKGTL_ 0 0 0 REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.2221984863281 3 320.222188 957.644734 NaN NaN NaN NaN NaN NaN NaN 94.909 1 90.859 90.359 91.359 -4.0496 0 0 0 0.21486 1 18603 18603 0 0 1 + 24298 15958 15963 15969 24050 24050 0.16421738567714783 KRKKKGTL 8 Unmodified _KRKKKGTL_ 0 0 0 REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.2223815917969 3 320.222188 957.644734 NaN NaN NaN NaN NaN NaN NaN 96.811 1 92.576 92.076 93.076 -4.2348 0 0 0 0.21486 1 18486 18486 0 0 1 + 24299 15958 15963 15969 24051 24051 0.16421738567714783 KRKKKGTL 8 Unmodified _KRKKKGTL_ 0 0 0 REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.17041015625 3 320.222188 957.644734 NaN NaN NaN NaN NaN NaN NaN 85.617 1 81.905 81.405 82.405 -3.7117 0 0 0 0.21486 1 16359 16359 0 0 1 + 24300 15958 15963 15969 24052 24052 0.16421738567714783 KRKKKRKD 8 Unmodified _KRKKKRKD_ 0 0 0 ENSG00000118507|ENST00000431975|AKAP7;AKAP7|p.I239*|1|0.37|ENSG00000118507|chr6:131219667-131219667|A/-|frameshift_variant;AKAP7|p.I239Nfs*4|1|0.17|ENSG00000118507|chr6:131219666-131219667|-/A|frameshift_variant ENSG00000118507|ENST00000431975|AKAP7 ENSG00000118507|ENST00000431975|AKAP7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7817993164062 2 543.864549 1085.71454 NaN NaN NaN NaN NaN NaN NaN 134.82 1 130 129.5 130.5 -4.8175 0 0 0 0.2396 1 25956 25956 0.30703 0 1 24301 3040 15964 15970 24053 24053 0.17511617236323218 KRKKPGRKKPR 11 Unmodified _KRKKPGRKKPR_ 0 0 0 REV__ENSG00000171532|ENST00000302584|NEUROD2 REV__ENSG00000171532|ENST00000302584|NEUROD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2440185546875 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 94.658 1 90.777 90.277 91.277 -3.881 0 0 0 0.22632 1 18162 18162 0 0 1 + 24302 18232 15965 15971 24054 24054 0.2418630627280436 KRKKRKRRRKR 11 Unmodified _KRKKRKRRRKR_ 0 0 0 REV__ENST00000308478.9_1_7:110731416-110762496:+|nuORF REV__ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 532.266357421875 3 532.704625 1595.09205 NaN NaN NaN NaN NaN NaN NaN 166.5 1 161.71 161.21 162.21 -4.7898 0 0 0 0.22632 1 33460 33460 0.094841 0 1 + 24303 20462 15966 15972 24055 24055 0.31830360226581433 KRKKSRSKKVR 11 Unmodified _KRKKSRSKKVR_ 0 0 0 nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B nc|ENSG00000115750|Q53T94-3|TAF1B nc|ENSG00000115750|Q53T94-3|TAF1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.8771667480469 4 350.987572 1399.92118 0.60269 0.00021154 -1.0042 -0.00035245 -0.40149 -0.00014092 350.987125447302 27.806 0.66665 25.883 25.558 26.225 -1.923 25 18 2 0 0 0 0.89134 1 4930 4930 0 0 1 326740 24304 2881 15967 15973 24056 24056 0.2372198506463974 KRKKWKPKIKK 11 Unmodified _KRKKWKPKIKK_ 0 0 0 BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2649841308594 3 490.004796 1466.99256 NaN NaN NaN NaN NaN NaN NaN 156 1 150.71 150.21 151.21 -5.2854 0 0 0 0.22632 1 30258 30258 0.00056442 0 1 24305 300 15968 15974 24057 24057 0.2777410476928708 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2515563964844 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 28.434 1 28.434 27.934 28.934 0 0 0 0 0.22588 1 5048 5048 0.15932 0 1 + 24306 20748 15969 15975 24058 24058 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2409973144531 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 28.637 1 28.637 28.137 29.137 0 0 0 0 0.22588 1 5092 5092 0.15932 0 1 + 24307 20748 15969 15975 24059 24059 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25396728515625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 31.218 1 31.218 30.718 31.718 0 0 0 0 0.22588 1 5631 5631 0.15932 0 1 + 24308 20748 15969 15975 24060 24060 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2474365234375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 33.507 1 33.507 33.007 34.007 0 0 0 0 0.22588 1 6117 6117 0.15932 0 1 + 24309 20748 15969 15975 24061 24061 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2471618652344 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 36.419 1 36.419 35.919 36.919 0 0 0 0 0.22588 1 6712 6712 0.15932 0 1 + 24310 20748 15969 15975 24062 24062 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2545166015625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 36.56 1 36.56 36.06 37.06 0 0 0 0 0.22588 1 6742 6742 0.15932 0 1 + 24311 20748 15969 15975 24063 24063 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24859619140625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 39.935 1 39.935 39.435 40.435 0 0 0 0 2.8426 1 7419 7419 0.043787 0 1 + 24312 20748 15969 15975 24064 24064 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2408447265625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 40.322 1 40.322 39.822 40.822 0 0 0 0 0.22588 1 7498 7498 0.15932 0 1 + 24313 20748 15969 15975 24065 24065 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2452697753906 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 57.843 1 57.843 57.343 58.343 0 0 0 0 2.8426 1 11063 11063 0.0013812 0.0013812 1 + 24314 20748 15969 15975 24066 24066 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2557678222656 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 87.397 1 87.397 86.897 87.897 0 0 0 0 0.22588 1 17061 17061 0.15932 0 1 + 24315 20748 15969 15975 24067 24067 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.238525390625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 104.67 1 104.67 104.17 105.17 0 0 0 0 0.22588 1 20570 20570 0.15932 0 1 + 24316 20748 15969 15975 24068 24068 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2561340332031 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 113.94 1 113.94 113.44 114.44 0 0 0 0 0.22588 1 22408 22408 0.15932 0 1 + 24317 20748 15969 15975 24069 24069 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2537536621094 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 134.78 1 134.78 134.28 135.28 0 0 0 0 0.22588 1 26685 26685 0.15932 0 1 + 24318 20748 15969 15975 24070 24070 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.251708984375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 146.95 1 146.95 146.45 147.45 0 0 0 0 2.8426 1 29391 29391 0.13989 0 1 + 24319 20748 15969 15975 24071 24071 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25408935546875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 149.45 1 149.45 148.95 149.95 0 0 0 0 0.22588 1 29918 29918 0.15932 0 1 + 24320 20748 15969 15975 24072 24072 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25390625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 38.891 1 36.342 35.842 36.842 -2.5491 0 0 0 0.22588 1 7220 7220 0.15932 0 1 + 24321 20748 15969 15975 24073 24073 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2423095703125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 45.598 1 42.757 42.257 43.257 -2.8409 0 0 0 0.22588 1 8593 8593 0.15932 0 1 + 24322 20748 15969 15975 24074 24074 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2372741699219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 57.034 1 54.14 53.64 54.64 -2.8944 0 0 0 0.22588 1 10942 10942 0.15932 0 1 + 24323 20748 15969 15975 24075 24075 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2538757324219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 61.184 1 58.251 57.751 58.751 -2.9333 0 0 0 0.22588 1 11789 11789 0.15932 0 1 + 24324 20748 15969 15975 24076 24076 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2466125488281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 68.552 1 65.373 64.873 65.873 -3.1796 0 0 0 2.8426 1 13316 13316 0.043787 0 1 + 24325 20748 15969 15975 24077 24077 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.236328125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 99.058 1 94.925 94.425 95.425 -4.1326 0 0 0 0.22588 1 19452 19452 0.15932 0 1 + 24326 20748 15969 15975 24078 24078 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.23858642578125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 101.61 1 97.449 96.949 97.949 -4.1594 0 0 0 0.22588 1 19967 19967 0.15932 0 1 + 24327 20748 15969 15975 24079 24079 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25469970703125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 103.85 1 99.629 99.129 100.13 -4.2183 0 0 0 0.22588 1 20418 20418 0.15932 0 1 + 24328 20748 15969 15975 24080 24080 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25262451171875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 115.18 1 110.71 110.21 111.21 -4.4726 0 0 0 0.22588 1 22701 22701 0.15932 0 1 + 24329 20748 15969 15975 24081 24081 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2500305175781 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 127.51 1 122.89 122.39 123.39 -4.6172 0 0 0 0.22588 1 25144 25144 0.15932 0 1 + 24330 20748 15969 15975 24082 24082 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2446594238281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 36.064 1 33.811 33.311 34.311 -2.2527 0 0 0 2.8426 1 6373 6373 0.043787 0 1 + 24331 20748 15969 15975 24083 24083 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2446594238281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 36.078 1 33.826 33.326 34.326 -2.2527 0 0 0 0.22588 1 6376 6376 0.15932 0 1 + 24332 20748 15969 15975 24084 24084 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2372741699219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 37.237 1 34.889 34.389 35.389 -2.3479 0 0 0 0.22588 1 6599 6599 0.15932 0 1 + 24333 20748 15969 15975 24085 24085 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2457580566406 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 38.65 1 36.208 35.708 36.708 -2.4419 0 0 0 0.22588 1 6884 6884 0.15932 0 1 + 24334 20748 15969 15975 24086 24086 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2384948730469 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 47.074 1 44.132 43.632 44.632 -2.9421 0 0 0 0.22588 1 8572 8572 0.15932 0 1 + 24335 20748 15969 15975 24087 24087 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2532958984375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 56.744 1 53.555 53.055 54.055 -3.1895 0 0 0 0.22588 1 10523 10523 0.15932 0 1 + 24336 20748 15969 15975 24088 24088 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25128173828125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 66.952 1 63.455 62.955 63.955 -3.4965 0 0 0 2.8426 1 12555 12555 0.26539 0 1 + 24337 20748 15969 15975 24089 24089 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2431335449219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 67.153 1 63.656 63.156 64.156 -3.4965 0 0 0 2.8426 1 12595 12595 0.043787 0 1 + 24338 20748 15969 15975 24090 24090 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2402038574219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 86.063 1 82.112 81.612 82.612 -3.9503 0 0 0 2.8426 1 16377 16377 0.043787 0 1 + 24339 20748 15969 15975 24091 24091 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2441711425781 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 21.955 1 20.234 19.734 20.734 -1.7211 0 0 0 0.22588 1 3462 3462 0.15932 0 1 + 24340 20748 15969 15975 24092 24092 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2528991699219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 22.085 1 20.364 19.864 20.864 -1.7211 0 0 0 0.22588 1 3489 3489 0.15932 0 1 + 24341 20748 15969 15975 24093 24093 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2370910644531 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 33.235 1 31.02 30.52 31.52 -2.2158 0 0 0 0.22588 1 5784 5784 0.15932 0 1 + 24342 20748 15969 15975 24094 24094 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24609375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 35.807 1 33.531 33.031 34.031 -2.2766 0 0 0 0.22588 1 6304 6304 0.15932 0 1 + 24343 20748 15969 15975 24095 24095 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2521667480469 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 56.97 1 53.794 53.294 54.294 -3.1761 0 0 0 0.22588 1 10612 10612 0.15932 0 1 + 24344 20748 15969 15975 24096 24096 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2539367675781 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 61.631 1 58.392 57.892 58.892 -3.2395 0 0 0 0.22588 1 11539 11539 0.15932 0 1 + 24345 20748 15969 15975 24097 24097 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2516174316406 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 62.16 1 58.92 58.42 59.42 -3.2395 0 0 0 2.8426 1 11650 11650 0.69767 0.65388 1 + 24346 20748 15969 15975 24098 24098 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2540588378906 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 62.72 1 59.48 58.98 59.98 -3.2395 0 0 0 0.22588 1 11760 11760 0.15932 0 1 + 24347 20748 15969 15975 24099 24099 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2513122558594 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 66.057 1 62.774 62.274 63.274 -3.2832 0 0 0 2.8426 1 12428 12428 0.69767 0.65388 1 + 24348 20748 15969 15975 24100 24100 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2451477050781 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 73.578 1 69.984 69.484 70.484 -3.594 0 0 0 2.8426 1 13966 13966 0.043787 0 1 + 24349 20748 15969 15975 24101 24101 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.253662109375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 108.75 1 104.57 104.07 105.07 -4.1826 0 0 0 0.22588 1 20929 20929 0.15932 0 1 + 24350 20748 15969 15975 24102 24102 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2368469238281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 118.77 1 114.36 113.86 114.86 -4.4088 0 0 0 0.22588 1 22855 22855 0.15932 0 1 + 24351 20748 15969 15975 24103 24103 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2384033203125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 128.19 1 123.45 122.95 123.95 -4.7408 0 0 0 0.22588 1 24666 24666 0.15932 0 1 + 24352 20748 15969 15975 24104 24104 0.21390489652867473 KRKLARLLIY 10 Unmodified _KRKLARLLIY_ 0 0 0 REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF REV__ENST00000345317.6_1_7:26708085-26708181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2415771484375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 134.75 1 129.93 129.43 130.43 -4.8175 0 0 0 0.22588 1 25941 25941 0.15932 0 1 + 24353 20748 15969 15975 24105 24105 0.21390489652867473 KRKLGGGN 8 Unmodified _KRKLGGGN_ 0 0 0 REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.2540588378906 2 415.253769 828.492984 NaN NaN NaN NaN NaN NaN NaN 4.8828 1 4.8828 4.3828 5.3828 0 0 0 0 0.21486 1 173 173 0.79363 0 1 + 24354 25498 15970 15976 24106 24106 0.07187757540009443 KRKLGGGN 8 Unmodified _KRKLGGGN_ 0 0 0 REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.25408935546875 2 415.253769 828.492984 NaN NaN NaN NaN NaN NaN NaN 5.6927 1 4.6527 4.1527 5.1527 -1.04 0 0 0 0.21486 1 313 313 0.79363 0 1 + 24355 25498 15970 15976 24107 24107 0.07187757540009443 KRKLGGGN 8 Unmodified _KRKLGGGN_ 0 0 0 REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.25396728515625 2 415.253769 828.492984 NaN NaN NaN NaN NaN NaN NaN 8.6918 1 7.6274 7.1274 8.1274 -1.0645 0 0 0 0.21486 1 879 879 0.79363 0 1 + 24356 25498 15970 15976 24108 24108 0.07187757540009443 KRKLGGGN 8 Unmodified _KRKLGGGN_ 0 0 0 REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant REV__TTC3|p.E779Rfs*18|1|0.33|ENSG00000182670|chr21:37151942-37151943|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.25396728515625 2 415.253769 828.492984 NaN NaN NaN NaN NaN NaN NaN 7.5886 1 6.5738 6.0738 7.0738 -1.0148 0 0 0 0.21486 1 631 631 0.79363 0 1 + 24357 25498 15970 15976 24109 24109 0.07187757540009443 KRKLLKVIP 9 Unmodified _KRKLLKVIP_ 0 0 0 NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant;nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8 NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77978515625 2 547.892244 1093.76993 0.23284 0.00012757 4.3059 0.0023592 4.5387 0.0024867 548.3945830794377 128.55 0.13753 123.81 123.73 123.87 -4.7408 5 3 2 0 0 0 0.65513 1 24735 24735 0 0 1 692950 24358 6640 15971 15977 24110 24110 0.22680030704100318 KRKQHKRKH 9 Unmodified _KRKQHKRKH_ 0 0 0 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.90826416015625 3 415.93029 1244.76904 NaN NaN NaN NaN NaN NaN NaN 10.59 1 9.6859 9.1859 10.186 -0.90401 0 0 0 0.23508 1 1338 1338 0.26902 0.1097 1 + 24359 17848 15972 15978 24111 24111 0.15644629107737273 KRKQYKQWWKY 11 Unmodified _KRKQYKQWWKY_ 0 0 0 REV__ENST00000482844.5_1_3:3196419-3214524:-|nuORF REV__ENST00000482844.5_1_3:3196419-3214524:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.779296875 3 547.971932 1640.89397 NaN NaN NaN NaN NaN NaN NaN 16.499 1 15.283 14.783 15.783 -1.2159 0 0 0 0.22632 1 2600 2600 0 0 1 + 24360 13579 15973 15979 24112 24112 0.09915456733597239 KRKRHWRPYLE 11 Unmodified _KRKRHWRPYLE_ 0 0 0 ENSG00000168517|ENST00000589230|HEXIM2 ENSG00000168517|ENST00000589230|HEXIM2 ENSG00000168517|ENST00000589230|HEXIM2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6847534179688 3 523.635542 1567.8848 NaN NaN NaN NaN NaN NaN NaN 119.38 1 114.74 114.24 115.24 -4.645 0 0 0 0.22632 1 22912 22912 0.172 0 1 24361 5918 15974 15980 24113 24113 0.12357108167952902 KRKRKKNKSS 10 Unmodified _KRKRKKNKSS_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.764404296875 2 630.40457 1258.79459 NaN NaN NaN NaN NaN NaN NaN 175.31 1 170.52 170.02 171.02 -4.7898 0 0 0 2.8426 1 35848 35848 0.043787 0 1 24362 7066 15975 15981 24114 24114 0.1755405883950516 KRKRKKWVEEH 11 Unmodified _KRKRKKWVEEH_ 0 0 0 REV__ENST00000597112.5_1_19:53589508-53594680:-|nuORF REV__ENST00000597112.5_1_19:53589508-53594680:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2198791503906 4 381.728392 1522.88446 -2.2797 -0.00087022 0.019791 7.5549E-06 -2.2599 -0.00086266 381.7281943803084 14.811 0.16978 13.6 13.513 13.683 -1.2106 5 4 2 0 0 0 0.96228 1 2012 2012 0 0 1 58751 + 24363 23387 15976 15982 24115 24115 0.14393688448103603 KRKVKLLL 8 Unmodified _KRKVKLLL_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1;ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant;ICE1|p.F326Lfs*82|1|0.38|ENSG00000164151|chr5:5457612-5457612|T/-|frameshift_variant ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.2466735839844 3 333.246333 996.717171 NaN NaN NaN NaN NaN NaN NaN 97.729 1 93.494 92.994 93.994 -4.2348 0 0 0 0.21486 1 18671 18671 0 0 1 24364 5514 15977 15983 24116 24116 0.21868072641291292 KRKVLRPLR 9 Unmodified _KRKVLRPLR_ 0 0 0 nc|ENSG00000163517|Q96DB2-2|HDAC11 nc|ENSG00000163517|Q96DB2-2|HDAC11 nc|ENSG00000163517|Q96DB2-2|HDAC11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 583.526611328125 2 583.403841 1164.79313 NaN NaN NaN NaN NaN NaN NaN 165.03 1 160.05 159.55 160.55 -4.9811 0 0 0 0.19657 1 32229 32229 4.897 1.0207 1 24365 12417 15978 15984 24117 24117 0.21732469541393584 KRKWRRRRWSL 11 Unmodified _KRKWRRRRWSL_ 0 0 0 REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7953491210938 3 543.334198 1626.98076 0.22556 0.00012256 1.9667 0.0010686 2.1922 0.0011911 543.6689934360155 134.6 0.18013 129.96 129.88 130.06 -4.6399 5 4 2 0 0 0 0.96225 1 26564 26564 0.45452 0.046251 1 809300 + 24366 20157 15979 15985 24118 24118 0.19235300798663957 KRKYIHLFIIT 11 Unmodified _KRKYIHLFIIT_ 0 0 0 REV__ENSG00000167904|ENST00000434581|TMEM68 REV__ENSG00000167904|ENST00000434581|TMEM68 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 477.9402160644531 3 477.966007 1430.87619 NaN NaN NaN NaN NaN NaN NaN 147.78 1 142.62 142.12 143.12 -5.1557 0 0 0 0.22632 1 28602 28602 5.4027 0 1 + 24367 17979 15980 15986 24119 24119 0.17798741478736702 KRLIFKLK 8 Unmodified _KRLIFKLK_ 0 0 0 REV__ATP6V0A1|p.E127K|1|0.32|ENSG00000033627|chr17:42470174-42470174|G/A|missense_variant REV__ATP6V0A1|p.E127K|1|0.32|ENSG00000033627|chr17:42470174-42470174|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6903076171875 2 523.365862 1044.71717 0.17597 9.2096E-05 4.0527 0.002121 4.2286 0.0022131 523.370257927929 115.57 0.10328 115.57 115.49 115.59 0 4 2 2 0 0 0 0.89926 1 22750 22750 0.30703 0 1 726170 + 24368 13152 15981 15987 24120 24120 0.19660072641272563 KRLKKERHKR 10 Unmodified _KRLKKERHKR_ 0 0 0 REV__ENSG00000126870|ENST00000407559|DYNC2I1 REV__ENSG00000126870|ENST00000407559|DYNC2I1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23504638671875 3 460.300383 1377.87932 NaN NaN NaN NaN NaN NaN NaN 12.6 1 11.479 10.979 11.979 -1.1206 0 0 0 0.22588 1 1512 1512 0.15932 0 1 + 24369 15870 15982 15988 24121 24121 0.2054942937609212 KRLKKKGKMK 10 Unmodified _KRLKKKGKMK_ 0 0 0 SESN3|p.Q273Kfs*14|1|0.37|ENSG00000149212|chr11:95184541-95184541|A/-|frameshift_variant SESN3|p.Q273Kfs*14|1|0.37|ENSG00000149212|chr11:95184541-95184541|A/-|frameshift_variant SESN3|p.Q273Kfs*14|1|0.37|ENSG00000149212|chr11:95184541-95184541|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7645263671875 2 622.92101 1243.82747 NaN NaN NaN NaN NaN NaN NaN 112.23 1 112.23 111.73 112.73 0 0 0 0 2.8426 1 22079 22079 0.0013812 0 1 24370 25655 15983 15989 24122 24122 0.2153054963798695 KRLKYFIN 8 Unmodified _KRLKYFIN_ 0 0 0 REV__ENST00000331314.10_1_1:200635381-200635528:-|nuORF REV__ENST00000331314.10_1_1:200635381-200635528:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2761840820312 2 541.329476 1080.6444 NaN NaN NaN NaN NaN NaN NaN 161.91 1 161.91 161.41 162.41 0 0 0 0 0.23664 1 32526 32526 3.2813 0 1 + 24371 20613 15984 15990 24123 24123 0.1073031884784541 KRLLFRVKLT 10 Unmodified _KRLLFRVKLT_ 0 0 0 ENST00000451653.5_2_3:42589735-42590053:-|nuORF ENST00000451653.5_2_3:42589735-42590053:-|nuORF ENST00000451653.5_2_3:42589735-42590053:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24981689453125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 43.943 1 41.177 40.677 41.677 -2.7661 0 0 0 2.8426 1 7944 7944 0 0 1 24372 9980 15985 15991 24124 24124 0.21390489652844735 KRLLGKVHILL 11 Unmodified _KRLLGKVHILL_ 0 0 0 nc|ENSG00000290988|Q8N8C0-2|ZNF781;nc|ENSG00000290988|Q8N8C0|ZNF781 nc|ENSG00000290988|Q8N8C0-2|ZNF781 nc|ENSG00000290988|Q8N8C0-2|ZNF781 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 646.04150390625 2 645.442632 1288.87071 0.75341 0.00048628 -0.76379 -0.00049298 -0.010374 -6.6958E-06 645.9426754364948 173.61 0.16736 168.73 168.58 168.74 -4.881 5 4 2 0 0 0 0.8912 1 34493 34493 0.026206 0 1 7213500 24373 12662 15986 15992 24125 24125 0.23783062686948142 KRLLIHTK 8 Unmodified _KRLLIHTK_ 0 0 0 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;ENST00000531788.5_1_6:135639727-135754270:-|nuORF nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.1649475097656 3 336.894071 1007.66038 NaN NaN NaN NaN NaN NaN NaN 43.409 1 43.409 42.909 43.909 0 0 0 0 0.23899 1 8131 8131 1.3295 0 1 24374 3934 15987 15993 24126 24126 0.15686025084744415 KRLSKLIKKF 10 Unmodified _KRLSKLIKKF_ 0 0 0 nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7703857421875 2 630.929357 1259.84416 NaN NaN NaN NaN NaN NaN NaN 121.6 1 117.06 116.56 117.56 -4.5476 0 0 0 2.8426 1 23969 23969 0.063865 0.062484 1 24375 5237 15988 15994 24127 24127 0.2246337379558554 KRLWRLERRRR 11 Unmodified _KRLWRLERRRR_ 0 0 0 CACNA1H|p.R1579W|1|0.32|ENSG00000196557|chr16:1212114-1212114|C/T|missense_variant CACNA1H|p.R1579W|1|0.32|ENSG00000196557|chr16:1212114-1212114|C/T|missense_variant CACNA1H|p.R1579W|1|0.32|ENSG00000196557|chr16:1212114-1212114|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 812.9774780273438 2 813.00839 1624.00223 NaN NaN NaN NaN NaN NaN NaN 174.96 1 170.07 169.57 170.57 -4.8916 0 0 0 0.22632 1 34855 34855 0.00056442 0.00056442 1 24376 364 15989 15995 24128 24128 0.21518685827345507 KRLYTEKW 8 Unmodified _KRLYTEKW_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21136474609375 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 23.106 1 21.317 20.817 21.817 -1.7886 0 0 0 0.2396 1 3702 3702 0.12286 0 1 24377 6829 15990 15996 24129 24129 0.06217424605551969 KRMRMRGMW 9 Unmodified _KRMRMRGMW_ 0 0 0 REV__TRPM3|p.L777M|1|0.37|ENSG00000083067|chr9:70616069-70616069|G/T|missense_variant REV__TRPM3|p.L777M|1|0.37|ENSG00000083067|chr9:70616069-70616069|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 417.8847351074219 3 417.884307 1250.63109 NaN NaN NaN NaN NaN NaN NaN 10.694 1 10.694 10.194 11.194 0 0 0 0 0.23508 1 1354 1354 0 0 1 + 24378 25487 15991 15997 24130 24130 0.015800982009523068 KRNKRGWRGRR 11 Unmodified _KRNKRGWRGRR_ 0 0 0 REV__KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant REV__KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27105712890625 3 490.631014 1468.87121 NaN NaN NaN NaN NaN NaN NaN 159.82 1 154.57 154.07 155.07 -5.2526 0 0 0 0.22632 1 31010 31010 0.094841 0 1 + 24379 23696 15992 15998 24131 24131 0.15553295179324778 KRNPKAFAF 9 Unmodified _KRNPKAFAF_ 0 0 0 ENST00000399449.3_1_10:75487125-75488312:-|nuORF ENST00000399449.3_1_10:75487125-75488312:-|nuORF ENST00000399449.3_1_10:75487125-75488312:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21002197265625 3 360.210059 1077.60835 0.04109 1.4801E-05 0.041727 1.503E-05 0.082817 2.9831E-05 360.2100230287873 44.452 0.5201 44.452 44.222 44.742 0 34 14 3 0 0 0 0.45972 4 8332 8332;8336;8385;8387 14.405 8.0277 1 2097900 24380 9498 15993 15999 24132;24133;24134;24135 24132 0.07264861670978462 KRNPKAFAF 9 Unmodified _KRNPKAFAF_ 0 0 0 ENST00000399449.3_1_10:75487125-75488312:-|nuORF ENST00000399449.3_1_10:75487125-75488312:-|nuORF ENST00000399449.3_1_10:75487125-75488312:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.5260314941406 3 360.210059 1077.60835 -0.77904 -0.00028062 0.7014 0.00025265 -0.077632 -2.7964E-05 360.21024781355584 47.133 0.41602 44.183 44.017 44.433 -2.9499 19 11 2 0 0 0 0.47592 1 8593 8593 17.113 16.705 1 1298900 24381 9498 15993 15999 24136 24136 0.07264861670978462 KRNPKAFAF 9 Unmodified _KRNPKAFAF_ 0 0 0 ENST00000399449.3_1_10:75487125-75488312:-|nuORF ENST00000399449.3_1_10:75487125-75488312:-|nuORF ENST00000399449.3_1_10:75487125-75488312:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 360.210059 1077.60835 -0.31454 -0.0001133 0.30889 0.00011126 -0.0056538 -2.0366E-06 360.21015359031304 47.186 0.41486 44.317 44.081 44.495 -2.869 0.019363 1.8834E-05 NaN 17.113 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1250500 24382 9498 15993 15999 0.07264861670978462 KRNPKAFAF 9 Unmodified _KRNPKAFAF_ 0 0 0 ENST00000399449.3_1_10:75487125-75488312:-|nuORF ENST00000399449.3_1_10:75487125-75488312:-|nuORF ENST00000399449.3_1_10:75487125-75488312:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 360.210059 1077.60835 0.0030101 1.0843E-06 0.45129 0.00016256 0.4543 0.00016364 360.21002858275654 47.18 0.41146 44.238 44.033 44.445 -2.9421 -0.059621 0.00017271 NaN 17.113 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 960740 24383 9498 15993 15999 0.07264861670978462 KRNRSDRF 8 Unmodified _KRNRSDRF_ 0 0 0 LAPTM4A|p.F175Lfs*5|2|0.2|ENSG00000068697|chr2:20034970-20034970|A/-|frameshift_variant;ENSG00000068697|ENST00000175091|LAPTM4A LAPTM4A|p.F175Lfs*5|2|0.2|ENSG00000068697|chr2:20034970-20034970|A/-|frameshift_variant LAPTM4A|p.F175Lfs*5|2|0.2|ENSG00000068697|chr2:20034970-20034970|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015686035156 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 95.142 1 95.142 94.642 95.642 0 0 0 0 0.21486 1 18636 18636 2.9952 0.49676 1 24384 1407 15994 16000 24137 24137 0.04348717374705302 KRPLRPRKKR 10 Unmodified _KRPLRPRKKR_ 0 0 0 REV__INO80E|p.E161K|1|0.3|ENSG00000169592|chr16:30001498-30001498|G/A|missense_variant REV__INO80E|p.E161K|1|0.3|ENSG00000169592|chr16:30001498-30001498|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.97454833984375 4 334.479649 1333.88949 -0.74159 -0.00024805 -1.5305 -0.00051194 -2.2721 -0.00075998 334.47901560221226 67.108 1.0285 67.108 66.59 67.618 0 73 28 4 0 0 0 0.52989 1 12980 12980 1.9064 0 1 7566800 + 24385 23661 15995 16001 24138 24138 0.23590037101325834 KRPLRPRKKR 10 Unmodified _KRPLRPRKKR_ 0 0 0 REV__INO80E|p.E161K|1|0.3|ENSG00000169592|chr16:30001498-30001498|G/A|missense_variant REV__INO80E|p.E161K|1|0.3|ENSG00000169592|chr16:30001498-30001498|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 334.479649 1333.88949 -0.74159 -0.00024805 -1.5305 -0.00051194 -2.2721 -0.00075998 334.47901560221226 67.108 1.0285 67.108 66.59 67.618 0 0 0 NaN 1.9064 73 28 4 NaN NaN NaN NaN 0 NaN NaN 0 7566800 + 24386 23661 15995 16001 0.23590037101325834 KRPPGPGGLA 10 Unmodified _KRPPGPGGLA_ 0 0 0 REV__ENST00000379339.5_2_1:1017828-1018098:-|nuORF REV__ENST00000379339.5_2_1:1017828-1018098:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.155029296875 3 317.190776 948.550499 NaN NaN NaN NaN NaN NaN NaN 34.086 1 31.939 31.439 32.439 -2.1468 0 0 0 0.22588 1 5968 5968 0.77653 0.31819 1 + 24387 21136 15996 16002 24139 24139 0.07416599745579333 KRPRRRRRRRE 11 Unmodified _KRPRRRRRRRE_ 0 0 0 ENST00000367590.8_1_1:180601192-180601402:+|nuORF ENST00000367590.8_1_1:180601192-180601402:+|nuORF ENST00000367590.8_1_1:180601192-180601402:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2698974609375 3 541.343867 1621.00977 NaN NaN NaN NaN NaN NaN NaN 138.05 1 133.41 132.91 133.91 -4.6413 0 0 0 0.22632 1 27251 27251 0.094841 0 1 24388 9074 15997 16003 24140 24140 0.2241083814767535 KRPRYIYLIVY 11 Unmodified _KRPRYIYLIVY_ 0 0 0 ENST00000374994.8_2_9:101915367-101915715:+|nuORF ENST00000374994.8_2_9:101915367-101915715:+|nuORF ENST00000374994.8_2_9:101915367-101915715:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.39453125 2 742.442829 1482.87111 NaN NaN NaN NaN NaN NaN NaN 172.52 1 172.52 172.02 173.02 0 0 0 0 0.22632 1 35617 35617 0.172 0 1 24389 9232 15998 16004 24141 24141 0.14898437616102456 KRPSPSPPND 10 Unmodified _KRPSPSPPND_ 0 0 0 REV__nc|ENSG00000230246|P0DKV0|SPATA31C1 REV__nc|ENSG00000230246|P0DKV0|SPATA31C1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7822875976562 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 46.624 1 46.624 46.124 47.124 0 0 0 0 2.8426 1 8785 8785 0.26539 0.23611 1 + 24390 24281 15999 16005 24142 24142 0.008587693238041538 KRQEAIFEL 9 Unmodified _KRQEAIFEL_ 0 0 0 ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3 ENSG00000163947|ENST00000296315|ARHGEF3 ENSG00000163947|ENST00000296315|ARHGEF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 567.786865234375 2 567.319306 1132.62406 -0.27241 -0.00015454 0.75816 0.00043012 0.48576 0.00027558 567.3196903997455 113.28 0.71206 108.83 108.47 109.18 -4.4538 43 19 3 0 0 0 0.38759 1 22299 22299 42.232 22.87 1 2608500 24391 5490 16000 16006 24143 24143 0.06305103397380662 KRQEAIFEL 9 Unmodified _KRQEAIFEL_ 0 0 0 ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3 ENSG00000163947|ENST00000296315|ARHGEF3 ENSG00000163947|ENST00000296315|ARHGEF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 567.319306 1132.62406 0.038177 2.1658E-05 0.10717 6.08E-05 0.14535 8.2459E-05 567.3193496809663 113.27 0.66399 108.74 108.39 109.06 -4.5259 -0.035618 -9.8039E-05 NaN 42.232 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2409900 24392 5490 16000 16006 0.06305103397380662 KRQEAIFEL 9 Unmodified _KRQEAIFEL_ 0 0 0 ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3 ENSG00000163947|ENST00000296315|ARHGEF3 ENSG00000163947|ENST00000296315|ARHGEF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 567.319306 1132.62406 0.58924 0.00033429 -0.21429 -0.00012157 0.37496 0.00021272 567.3190043499054 113.03 0.70018 108.76 108.46 109.16 -4.2725 -0.014183 -0.00046278 NaN 42.232 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2859300 24393 5490 16000 16006 0.06305103397380662 KRQIRKYRL 9 Unmodified _KRQIRKYRL_ 0 0 0 REV__nc|ENSG00000124587|Q13608-3|PEX6 REV__nc|ENSG00000124587|Q13608-3|PEX6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7630004882812 2 630.904205 1259.79386 NaN NaN NaN NaN NaN NaN NaN 118.43 1 113.92 113.42 114.42 -4.502 0 0 0 0.19626 1 23352 23352 0.029283 0.029283 1 + 24394 15787 16001 16007 24144 24144 0.1743526419045338 KRQLFFRKKLL 11 Unmodified _KRQLFFRKKLL_ 0 0 0 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 492.7967224121094 3 492.989034 1475.94527 NaN NaN NaN NaN NaN NaN NaN 155.31 1 155.31 154.81 155.81 0 0 0 0 0.22632 1 31136 31136 0.094841 0 1 24395 1535 16002 16008 24145 24145 0.22633825498314764 KRQLTSQLL 9 Unmodified _KRQLTSQLL_ 0 0 0 REV__ENST00000316292.13_1_6:74228237-74228423:-|nuORF REV__ENST00000316292.13_1_6:74228237-74228423:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78955078125 2 543.835123 1085.65569 NaN NaN NaN NaN NaN NaN NaN 137.18 1 137.18 136.68 137.68 0 0 0 0 0.21844 1 27198 27198 18.146 1.0335 1 + 24396 13779 16003 16009 24146 24146 0.11629096151318663 KRQREERQRQR 11 Unmodified _KRQREERQRQR_ 0 0 0 ENSG00000134453|ENST00000379888|RBM17;ENST00000467214.1_1_10:6146929-6148209:+|nuORF ENSG00000134453|ENST00000379888|RBM17 ENSG00000134453|ENST00000379888|RBM17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.678466796875 3 523.96461 1568.872 0.12219 6.4025E-05 -0.64147 -0.00033611 -0.51927 -0.00027208 523.9641025836842 57.961 0.40869 54.756 54.546 54.954 -3.2052 15 11 2 0 0 0 0.79336 1 10805 10805 2.084 1.6757 1 782480 24397 3854 16004 16010 24147 24147 0.11032045037723037 KRQRRRNWKLK 11 Unmodified _KRQRRRNWKLK_ 0 0 0 ENSG00000169251|ENST00000351193|NMD3 ENSG00000169251|ENST00000351193|NMD3 ENSG00000169251|ENST00000351193|NMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.686767578125 3 523.662203 1567.96478 0.17979 9.4148E-05 -1.1929 -0.00062469 -1.0131 -0.00053055 523.6616388110413 121.09 0.10714 121.09 121.04 121.15 0 4 2 2 0 0 0 0.66298 1 23868 23868 0.094841 0 1 836910 24398 5975 16005 16011 24148 24148 0.20351594561748243 KRQRRRNWKLK 11 Unmodified _KRQRRRNWKLK_ 0 0 0 ENSG00000169251|ENST00000351193|NMD3 ENSG00000169251|ENST00000351193|NMD3 ENSG00000169251|ENST00000351193|NMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6919555664062 3 523.662203 1567.96478 0.18542 9.7096E-05 2.9546 0.0015472 3.14 0.0016443 523.6648104991107 136.97 0.55072 136.97 136.58 137.13 0 21 15 3 0 0 0 0.66234 1 27089 27089 0.58532 0.079364 1 18589000 24399 5975 16005 16011 24149 24149 0.20351594561748243 KRREEYFRRHE 11 Unmodified _KRREEYFRRHE_ 0 0 0 REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 535.9628295898438 3 535.950078 1604.82841 NaN NaN NaN NaN NaN NaN NaN 163.26 1 163.26 162.76 163.76 0 0 0 0 0.22632 1 32892 32892 0.094841 0 1 + 24400 24943 16006 16012 24150 24150 0.05018435540569044 KRRERRQRQKK 11 Unmodified _KRRERRQRQKK_ 0 0 0 REV__ENSG00000100207|ENST00000677622|TCF20 REV__ENSG00000100207|ENST00000677622|TCF20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.68994140625 3 523.660862 1567.96076 NaN NaN NaN NaN NaN NaN NaN 141.01 1 141.01 140.51 141.51 0 0 0 0 0.22632 1 28089 28089 0.50596 0.33396 1 + 24401 14674 16007 16013 24151 24151 0.19949505068029794 KRRIELNMWD 10 Unmodified _KRRIELNMWD_ 0 0 0 ENST00000587117.1_1_17:41177364-41178135:+|nuORF;ENSG00000108830|ENST00000587250|RND2 ENST00000587117.1_1_17:41177364-41178135:+|nuORF ENST00000587117.1_1_17:41177364-41178135:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.764404296875 3 454.243323 1359.70814 NaN NaN NaN NaN NaN NaN NaN 126.48 1 126.48 125.98 126.98 0 0 0 0 2.8426 1 24958 24958 0.69767 0 1 24402 2496 16008 16014 24152 24152 0.04267311222633907 KRRKKAKRKRK 11 Unmodified _KRRKKAKRKRK_ 0 0 0 REV__TMEM200C|p.G86Vfs*176|1|0.18|ENSG00000206432|chr18:5891807-5891807|C/-|frameshift_variant REV__TMEM200C|p.G86Vfs*176|1|0.18|ENSG00000206432|chr18:5891807-5891807|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3812866210938 2 742.018227 1482.0219 NaN NaN NaN NaN NaN NaN NaN 130.57 1 125.93 125.43 126.43 -4.6359 0 0 0 0.22632 1 25730 25730 0.00056442 0 1 + 24403 19620 16009 16015 24153 24153 0.3001706183811166 KRRKKAKRKRK 11 Unmodified _KRRKKAKRKRK_ 0 0 0 REV__TMEM200C|p.G86Vfs*176|1|0.18|ENSG00000206432|chr18:5891807-5891807|C/-|frameshift_variant REV__TMEM200C|p.G86Vfs*176|1|0.18|ENSG00000206432|chr18:5891807-5891807|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3807983398438 2 742.018227 1482.0219 NaN NaN NaN NaN NaN NaN NaN 158.29 1 153.02 152.52 153.52 -5.2712 0 0 0 0.22632 1 30715 30715 0.00056442 0 1 + 24404 19620 16009 16015 24154 24154 0.3001706183811166 KRRKKAKRKRK 11 Unmodified _KRRKKAKRKRK_ 0 0 0 REV__TMEM200C|p.G86Vfs*176|1|0.18|ENSG00000206432|chr18:5891807-5891807|C/-|frameshift_variant REV__TMEM200C|p.G86Vfs*176|1|0.18|ENSG00000206432|chr18:5891807-5891807|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3807983398438 2 742.018227 1482.0219 NaN NaN NaN NaN NaN NaN NaN 158.31 1 153.04 152.54 153.54 -5.2712 0 0 0 0.23698 1 30717 30717 0 0 1 + 24405 19620 16009 16015 24155 24155 0.3001706183811166 KRRKKKLRKE 10 Unmodified _KRRKKKLRKE_ 0 0 0 REV__TTC14|p.D534Gfs*2|1|0.04|ENSG00000163728|chr3:180609828-180609829|-/G|frameshift_variant REV__TTC14|p.D534Gfs*2|1|0.04|ENSG00000163728|chr3:180609828-180609829|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 457.35565185546875 3 457.3124 1368.91537 NaN NaN NaN NaN NaN NaN NaN 177.37 1 172.51 172.01 173.01 -4.8686 0 0 0 2.8426 1 35298 35298 0.69767 0.6971 1 + 24406 17607 16010 16016 24156 24156 0.24566886552929645 KRRKPRMP 8 Unmodified _KRRKPRMP_ 0 0 0 REV__ENST00000375608.7_2_13:113548693-113669133:+|nuORF REV__ENST00000375608.7_2_13:113548693-113669133:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.88775634765625 3 356.890555 1067.64984 NaN NaN NaN NaN NaN NaN NaN 86.467 1 82.738 82.238 83.238 -3.7289 0 0 0 0.2325 1 16535 16535 1.4551 0 1 + 24407 21067 16011 16017 24157 24157 0.1187171915869385 KRRKQKKKKKK 11 Unmodified _KRRKQKKKKKK_ 0 0 0 REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.4010620117188 2 742.522811 1483.03107 NaN NaN NaN NaN NaN NaN NaN 131.83 1 131.83 131.33 132.33 0 0 0 0 0.23698 1 26055 26055 0 0 1 + 24408 24368 16012 16018 24158 24158 0.30887410403806825 KRRKQKKKKKK 11 Unmodified _KRRKQKKKKKK_ 0 0 0 REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3759155273438 2 742.522811 1483.03107 NaN NaN NaN NaN NaN NaN NaN 38.757 1 36.208 35.708 36.708 -2.5491 0 0 0 0.22632 1 7194 7194 0 0 1 + 24409 24368 16012 16018 24159 24159 0.30887410403806825 KRRKQKKKKKK 11 Unmodified _KRRKQKKKKKK_ 0 0 0 REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3759155273438 2 742.522811 1483.03107 NaN NaN NaN NaN NaN NaN NaN 38.766 1 36.217 35.717 36.717 -2.5491 0 0 0 0.23698 1 7195 7195 0 0 1 + 24410 24368 16012 16018 24160 24160 0.30887410403806825 KRRKQKKKKKK 11 Unmodified _KRRKQKKKKKK_ 0 0 0 REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.380859375 2 742.522811 1483.03107 NaN NaN NaN NaN NaN NaN NaN 44.77 1 41.98 41.48 42.48 -2.79 0 0 0 0.22632 1 8419 8419 0 0 1 + 24411 24368 16012 16018 24161 24161 0.30887410403806825 KRRKQKKKKKK 11 Unmodified _KRRKQKKKKKK_ 0 0 0 REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3811645507812 2 742.522811 1483.03107 NaN NaN NaN NaN NaN NaN NaN 130.32 1 125.68 125.18 126.18 -4.6359 0 0 0 0.22632 1 25684 25684 0.00056442 0 1 + 24412 24368 16012 16018 24162 24162 0.30887410403806825 KRRKQKKKKKK 11 Unmodified _KRRKQKKKKKK_ 0 0 0 REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3811645507812 2 742.522811 1483.03107 NaN NaN NaN NaN NaN NaN NaN 130.33 1 125.7 125.2 126.2 -4.6359 0 0 0 0.23698 1 25687 25687 0 0 1 + 24413 24368 16012 16018 24163 24163 0.30887410403806825 KRRKQKKKKKK 11 Unmodified _KRRKQKKKKKK_ 0 0 0 REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.396240234375 2 742.522811 1483.03107 NaN NaN NaN NaN NaN NaN NaN 162.91 1 158.12 157.62 158.62 -4.7898 0 0 0 0.22632 1 32434 32434 0.00056442 0 1 + 24414 24368 16012 16018 24164 24164 0.30887410403806825 KRRKQKKKKKK 11 Unmodified _KRRKQKKKKKK_ 0 0 0 REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.396240234375 2 742.522811 1483.03107 NaN NaN NaN NaN NaN NaN NaN 162.93 1 158.14 157.64 158.64 -4.7898 0 0 0 0.23698 1 32437 32437 0 0 1 + 24415 24368 16012 16018 24165 24165 0.30887410403806825 KRRLRTRWHFL 11 Unmodified _KRRLRTRWHFL_ 0 0 0 REV__ENST00000560110.1_1_15:44968687-44968816:-|nuORF REV__ENST00000560110.1_1_15:44968687-44968816:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6921997070312 3 523.651415 1567.93242 0.19012 9.9556E-05 -1.1316 -0.00059255 -0.94145 -0.00049299 523.6519600076579 147.79 0.20526 147.79 147.71 147.92 0 6 5 2 0 0 0 0.66298 1 29583 29583 0.00056442 0 1 1278800 + 24416 23024 16013 16019 24166 24166 0.17116807158777192 KRRPGRFLRRW 11 Unmodified _KRRPGRFLRRW_ 0 0 0 REV__ENSG00000284188|ENST00000640271|unknown REV__ENSG00000284188|ENST00000640271|unknown MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 510.0235900878906 3 509.979644 1526.9171 -0.040211 -2.0507E-05 0.18155 9.2589E-05 0.14134 7.2082E-05 510.31510243754406 144.13 0.17264 139.46 139.4 139.57 -4.6694 5 4 2 0 0 0 0.89134 1 28549 28549 0.094841 0 1 1488000 + 24417 19964 16014 16020 24167 24167 0.1747194036156543 KRRRKLTKRLK 11 Unmodified _KRRRKLTKRLK_ 0 0 0 REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3902587890625 2 742.01261 1482.01067 NaN NaN NaN NaN NaN NaN NaN 151.71 1 146.53 146.03 147.03 -5.1759 0 0 0 0.23698 1 29400 29400 0.26902 0.033176 1 + 24418 23477 16015 16021 24168 24168 0.28894239743999606 KRRRLWRQRQ 10 Unmodified _KRRRLWRQRQ_ 0 0 0 ENST00000356840.7_1_6:16129383-16129569:+|nuORF ENST00000356840.7_1_6:16129383-16129569:+|nuORF ENST00000356840.7_1_6:16129383-16129569:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3895874023438 2 741.953084 1481.89161 NaN NaN NaN NaN NaN NaN NaN 168.35 1 168.35 167.85 168.85 0 0 0 0 2.8426 1 34472 34472 0.13989 0.04505 1 24419 8972 16016 16022 24169 24169 0.16994465839138684 KRRRRKKKEKA 11 Unmodified _KRRRRKKKEKA_ 0 0 0 REV__nc|ENSG00000080503|P51531-2|SMARCA2 REV__nc|ENSG00000080503|P51531-2|SMARCA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.374267578125 2 742.492042 1482.96953 NaN NaN NaN NaN NaN NaN NaN 137.74 1 132.82 132.32 133.32 -4.9216 0 0 0 0.23698 1 26481 26481 0.30703 0.30703 1 + 24420 14409 16017 16023 24170 24170 0.24736478704539877 KRRRRKRTKKR 11 Unmodified _KRRRRKRTKKR_ 0 0 0 REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.69287109375 3 523.688864 1568.04476 NaN NaN NaN NaN NaN NaN NaN 141.04 1 136.39 135.89 136.89 -4.6493 0 0 0 0.22632 1 27854 27854 0.094841 0 1 + 24421 20887 16018 16024 24171 24171 0.2834608095558906 KRRRRKWKWMR 11 Unmodified _KRRRRKWKWMR_ 0 0 0 PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 563.0872802734375 3 563.007316 1686.00012 NaN NaN NaN NaN NaN NaN NaN 141.33 1 136.68 136.18 137.18 -4.6493 0 0 0 0.23698 1 27915 27915 0 0 1 24422 12839 16019 16025 24172 24172 0.18455933817926962 KRRRRMKKRKP 11 Unmodified _KRRRRMKKRKP_ 0 0 0 REV__ENST00000300811.7_1_19:44112133-44118443:-|nuORF REV__ENST00000300811.7_1_19:44112133-44118443:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 514.0036010742188 3 514.003683 1538.98922 NaN NaN NaN NaN NaN NaN NaN 177.79 1 172.88 172.38 173.38 -4.9088 0 0 0 0.22632 1 35459 35459 0.094841 0 1 + 24423 20403 16020 16026 24173 24173 0.24128531443625434 KRRRRRGWRR 10 Unmodified _KRRRRRGWRR_ 0 0 0 ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF ENSG00000109685|ENST00000508803|NSD2 ENSG00000109685|ENST00000508803|NSD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3768310546875 2 741.964317 1481.91408 NaN NaN NaN NaN NaN NaN NaN 131.34 1 126.7 126.2 127.2 -4.6359 0 0 0 2.8426 1 25883 25883 0.13989 0.04505 1 24424 2538 16021 16027 24174 24174 0.19240110027431 KRRRRRRRSRS 11 Unmodified _KRRRRRRRSRS_ 0 0 0 ENST00000370010.6_1_6:76311739-76312006:+|nuORF ENST00000370010.6_1_6:76311739-76312006:+|nuORF ENST00000370010.6_1_6:76311739-76312006:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3755493164062 2 785.496513 1568.97847 NaN NaN NaN NaN NaN NaN NaN 177.88 1 177.88 177.38 178.38 0 0 0 0 0.23698 1 36852 36852 0.26902 0.26902 1 24425 9132 16022 16028 24175 24175 0.2167426511357462 KRRRRRRRSRS 11 Unmodified _KRRRRRRRSRS_ 0 0 0 ENST00000370010.6_1_6:76311739-76312006:+|nuORF ENST00000370010.6_1_6:76311739-76312006:+|nuORF ENST00000370010.6_1_6:76311739-76312006:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3995361328125 2 785.496513 1568.97847 NaN NaN NaN NaN NaN NaN NaN 102.33 1 98.007 97.507 98.507 -4.3208 0 0 0 0.22632 1 19593 19593 0.00056442 0.00056442 1 24426 9132 16022 16028 24176 24176 0.2167426511357462 KRRRRRSRKWR 11 Unmodified _KRRRRRSRKWR_ 0 0 0 ENST00000403909.2_1_6:139660476-139660551:+|nuORF ENST00000403909.2_1_6:139660476-139660551:+|nuORF ENST00000403909.2_1_6:139660476-139660551:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7783203125 3 547.68048 1640.01961 0.3309 0.00018123 1.1456 0.0006274 1.4765 0.00080863 547.6823219622461 140.25 0.21312 140.25 140.19 140.41 0 6 5 2 0 0 0 0.89134 1 27941 27941 0.00056442 0 1 3460500 24427 9526 16023 16029 24177 24177 0.2252002615305173 KRRTQRRLWIR 11 Unmodified _KRRTQRRLWIR_ 0 0 0 HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|75|1|anti-sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|75|1|anti-sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|75|1|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6868286132812 3 523.662203 1567.96478 0.18542 9.7096E-05 2.9546 0.0015472 3.14 0.0016443 523.6648104991107 136.97 0.55072 136.97 136.58 137.13 0 21 15 3 0 0 0 0.66234 3 27183 27114;27128;27183 0.40827 0.078994 1 18589000 24428 11898 16024 16030 24178;24179;24180 24180 0.2035159456177098 KRRTQRRLWIR 11 Unmodified _KRRTQRRLWIR_ 0 0 0 HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|75|1|anti-sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|75|1|anti-sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|75|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6941528320312 3 523.662203 1567.96478 NaN NaN NaN NaN NaN NaN NaN 144.99 1 140.05 139.55 140.55 -4.9445 0 0 0 0.22632 1 28020 28020 0.172 0.077159 1 24429 11898 16024 16030 24181 24181 0.2035159456177098 KRRVKKIRKKE 11 Unmodified _KRRVKKIRKKE_ 0 0 0 ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2613830566406 3 490.335204 1467.98378 NaN NaN NaN NaN NaN NaN NaN 143.52 1 138.87 138.37 139.37 -4.656 0 0 0 0.22632 1 28388 28388 0.50596 0.41111 1 24430 6412 16025 16031 24182 24182 0.26851131132775663 KRRWRRRVMLI 11 Unmodified _KRRWRRRVMLI_ 0 0 0 CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3922729492188 2 785.490988 1568.96742 NaN NaN NaN NaN NaN NaN NaN 114.29 1 109.97 109.47 110.47 -4.3136 0 0 0 0.22632 1 22016 22016 0.00056442 0.00056442 1 24431 481 16026 16032 24183 24183 0.20569726695066493 KRTCVVPA 8 Unmodified _KRTCVVPA_ 0 0 0 REV__ENST00000461076.1_1_22:20938698-20939799:+|nuORF REV__ENST00000461076.1_1_22:20938698-20939799:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2212219238281 2 437.25238 872.490207 NaN NaN NaN NaN NaN NaN NaN 109.83 1 105.64 105.14 106.14 -4.1826 0 0 0 0.23538 1 21134 21134 0.063987 0 1 + 24432 14647 16027 16033 24184 24184 0.04886166090818733 KRTFAGIN 8 Unmodified _KRTFAGIN_ 0 0 0 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7603759765625 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 44.037 1 41.289 40.789 41.789 -2.7475 0 0 0 0.23107 1 7966 7966 0.25148 0 1 24433 867 16028 16034 24185 24185 0.05176624337184421 KRTLRRKIERK 11 Unmodified _KRTLRRKIERK_ 0 0 0 REV__ENST00000493669.2_1_1:28816384-28823058:+|nuORF REV__ENST00000493669.2_1_1:28816384-28823058:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3929443359375 2 742.486425 1482.9583 NaN NaN NaN NaN NaN NaN NaN 46.609 1 43.744 43.244 44.244 -2.8653 0 0 0 0.22632 1 8479 8479 0.00056442 0.00056442 1 + 24434 15278 16029 16035 24186 24186 0.23613656610405087 KRTLRRKIERK 11 Unmodified _KRTLRRKIERK_ 0 0 0 REV__ENST00000493669.2_1_1:28816384-28823058:+|nuORF REV__ENST00000493669.2_1_1:28816384-28823058:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.383544921875 2 742.486425 1482.9583 NaN NaN NaN NaN NaN NaN NaN 144.55 1 139.61 139.11 140.11 -4.9445 0 0 0 0.22632 1 27924 27924 0.00056442 0.00056442 1 + 24435 15278 16029 16035 24187 24187 0.23613656610405087 KRTRARRRLWT 11 Unmodified _KRTRARRRLWT_ 0 0 0 REV__ENST00000530973.1_1_11:65111264-65113280:+|nuORF REV__ENST00000530973.1_1_11:65111264-65113280:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2096862792969 4 375.734009 1498.90693 0.12007 4.5116E-05 0.8985 0.0003376 1.0186 0.00038271 375.7342702722755 36.595 0.307 34.247 34.073 34.38 -2.3479 15 8 2 0 0 0 0.89134 1 6473 6473 0.094841 0.068635 1 713560 + 24436 22763 16030 16036 24188 24188 0.17743332636337072 KRVGLIHML 9 Unmodified _KRVGLIHML_ 0 0 0 ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1 ENST00000524832.5_1_11:882499-902261:-|nuORF ENST00000524832.5_1_11:882499-902261:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.5567932128906 3 356.223311 1065.6481 0.27795 9.9012E-05 -0.8927 -0.000318 -0.61475 -0.00021899 356.22295711772205 86.674 0.55947 82.724 82.366 82.926 -3.9503 28 15 2 0 0 0 0.25976 1 16454 16454 19.626 19.218 1 1842000 24437 6540 16031 16037 24189 24189 0.11790665350054041 KRVGLIHML 9 Unmodified _KRVGLIHML_ 0 0 0 ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1 ENST00000524832.5_1_11:882499-902261:-|nuORF ENST00000524832.5_1_11:882499-902261:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.2137756347656 3 356.223311 1065.6481 -0.59679 -0.00021259 -0.012037 -4.2878E-06 -0.60882 -0.00021688 356.22329197650754 86.479 0.5643 82.75 82.448 83.012 -3.7289 27 15 2 0 0 0 0.069179 1 16542 16542 37.075 37.075 1 1802300 24438 6540 16031 16037 24190 24190 0.11790665350054041 KRVGLIHML 9 Unmodified _KRVGLIHML_ 0 0 0 ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1 ENST00000524832.5_1_11:882499-902261:-|nuORF ENST00000524832.5_1_11:882499-902261:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 356.223311 1065.6481 -0.32799 -0.00011684 0.091922 3.2745E-05 -0.23607 -8.4092E-05 356.2232931140686 86.481 0.60471 82.754 82.404 83.009 -3.727 0.011297 0.00042821 NaN 37.075 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1908900 24439 6540 16031 16037 0.11790665350054041 KRVLLLLVLL 10 Unmodified _KRVLLLLVLL_ 0 0 0 REV__ENST00000567674.1_1_16:68721613-68732300:+|nuORF REV__ENST00000567674.1_1_16:68721613-68732300:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2577514648438 2 590.431202 1178.84785 NaN NaN NaN NaN NaN NaN NaN 64.189 1 60.932 60.432 61.432 -3.2567 0 0 0 2.8426 1 12049 12049 0 0 1 + 24440 14153 16032 16038 24191 24191 0.26558043569480105 KRVLLLLVLL 10 Unmodified _KRVLLLLVLL_ 0 0 0 REV__ENST00000567674.1_1_16:68721613-68732300:+|nuORF REV__ENST00000567674.1_1_16:68721613-68732300:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2577514648438 2 590.431202 1178.84785 NaN NaN NaN NaN NaN NaN NaN 64.201 1 60.945 60.445 61.445 -3.2567 0 0 0 0.22588 1 12051 12051 0 0 1 + 24441 14153 16032 16038 24192 24192 0.26558043569480105 KRVPAHFS 8 Unmodified _KRVPAHFS_ 0 0 0 ENST00000554754.5_1_14:59951243-59961809:+|nuORF;ENST00000553941.5_1_14:59953430-59961809:+|nuORF ENST00000554754.5_1_14:59951243-59961809:+|nuORF ENST00000554754.5_1_14:59951243-59961809:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.51824951171875 3 314.515371 940.524284 -0.69641 -0.00021903 0.55233 0.00017372 -0.14407 -4.5313E-05 314.5154878497648 26.168 0.65594 24.245 23.987 24.643 -1.9222 50 18 4 0 0 0 8448 1 4338 4338 6.2058 0 1 4425300 24442 11210 16033 16039 24193 24193 0.05164330574086762 KRVRFGLK 8 Unmodified _KRVRFGLK_ 0 0 0 ENSG00000182405|ENST00000397766|PGBD4 ENSG00000182405|ENST00000397766|PGBD4 ENSG00000182405|ENST00000397766|PGBD4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 335.2216796875 3 335.222299 1002.64507 NaN NaN NaN NaN NaN NaN NaN 94.784 1 90.593 90.093 91.093 -4.1911 0 0 0 0.21486 1 18088 18088 0.40072 0 1 24443 6788 16034 16040 24194 24194 0.14385158287564082 KRVTFTRA 8 Unmodified _KRVTFTRA_ 0 0 0 C1QA|p.D220Tfs*62|1|0.17|ENSG00000173372|chr1:22639322-22639322|A/-|frameshift_variant;C1QA|p.L91Sfs*191|1|0.52|ENSG00000173372|chr1:22638936-22638936|C/-|frameshift_variant C1QA|p.D220Tfs*62|1|0.17|ENSG00000173372|chr1:22639322-22639322|A/-|frameshift_variant C1QA|p.D220Tfs*62|1|0.17|ENSG00000173372|chr1:22639322-22639322|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2675476074219 2 489.795801 977.577048 0.093411 4.5752E-05 0.45638 0.00022353 0.54979 0.00026929 489.7957846197985 46.21 0.38055 43.345 43.172 43.553 -2.8653 17 10 2 0 0 0 8448 1 8367 8367 3.2813 0.78282 1 993150 24444 349 16035 16041 24195 24195 0.08736288636896461 KRWESERVL 9 Unmodified _KRWESERVL_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.27734375 2 601.835654 1201.65676 0.62042 0.00037339 -0.26138 -0.00015731 0.35904 0.00021608 601.8355244056659 42.771 0.45556 42.771 42.531 42.987 0 33 12 4 0 0 0 0.17734 1 7991 7991 40.239 26.333 1 3610700 24445 6952 16036 16042 24196 24196 0.06399310520237123 KRWESERVL 9 Unmodified _KRWESERVL_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2799682617188 2 601.835654 1201.65676 1.0003 0.00060201 -0.64842 -0.00039024 0.35187 0.00021177 601.8352630376535 45.644 0.48462 42.803 42.584 43.068 -2.8409 32 13 3 0 0 0 0.17734 3 8586 8583;8586;8636 40.239 22.093 1 5008400 24446 6952 16036 16042 24197;24198;24199 24198 0.06399310520237123 KRWESERVL 9 Unmodified _KRWESERVL_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 402.2380065917969 3 401.559528 1201.65676 -0.20122 -8.0802E-05 -0.001932 -7.7581E-07 -0.20315 -8.1578E-05 401.55954171575087 45.582 1.0113 42.741 42.439 43.45 -2.8409 92 28 5 0 0 0 0.069179 1 8660 8660 40.317 28.076 1 80144000 24447 6952 16036 16042 24200 24200 0.06399310520237123 KRWESERVL 9 Unmodified _KRWESERVL_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 401.559528 1201.65676 0.20734 8.3261E-05 -0.35737 -0.00014351 -0.15003 -6.0244E-05 401.55938633124714 42.736 0.94219 42.736 42.387 43.329 0 -0.027348 -0.00024508 NaN 40.317 75 26 5 NaN NaN NaN NaN 0 NaN NaN 0 56803000 24448 6952 16036 16042 0.06399310520237123 KRWESERVL 9 Unmodified _KRWESERVL_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 401.559528 1201.65676 -0.03306 -1.3276E-05 -0.13777 -5.5321E-05 -0.17083 -6.8597E-05 401.55946265849906 45.677 0.82579 42.812 42.449 43.275 -2.8653 0.048945 1.9475E-05 NaN 40.317 86 23 5 NaN NaN NaN NaN 0 NaN NaN 0 59468000 24449 6952 16036 16042 0.06399310520237123 KRWQKKRRWHI 11 Unmodified _KRWQKKRRWHI_ 0 0 0 REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3884887695312 2 811.48676 1620.95897 NaN NaN NaN NaN NaN NaN NaN 171.91 1 171.91 171.41 172.41 0 0 0 0 0.23698 1 35455 35455 0 0 1 + 24450 23502 16037 16043 24201 24201 0.17332496050107693 KRWQKKRRWHI 11 Unmodified _KRWQKKRRWHI_ 0 0 0 REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3740844726562 2 811.48676 1620.95897 NaN NaN NaN NaN NaN NaN NaN 178.51 1 178.51 178.01 179.01 0 0 0 0 0.22632 1 36980 36980 0 0 1 + 24451 23502 16037 16043 24202 24202 0.17332496050107693 KRWQKKRRWHI 11 Unmodified _KRWQKKRRWHI_ 0 0 0 REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3740844726562 2 811.48676 1620.95897 NaN NaN NaN NaN NaN NaN NaN 178.51 1 178.51 178.01 179.01 0 0 0 0 0.23698 1 36981 36981 0 0 1 + 24452 23502 16037 16043 24203 24203 0.17332496050107693 KRWQKKRRWHI 11 Unmodified _KRWQKKRRWHI_ 0 0 0 REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3619384765625 2 811.48676 1620.95897 NaN NaN NaN NaN NaN NaN NaN 142.6 1 137.95 137.45 138.45 -4.656 0 0 0 0.22632 1 28188 28188 0 0 1 + 24453 23502 16037 16043 24204 24204 0.17332496050107693 KRWQKKRRWHI 11 Unmodified _KRWQKKRRWHI_ 0 0 0 REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3856201171875 2 811.48676 1620.95897 NaN NaN NaN NaN NaN NaN NaN 172.01 1 167.22 166.72 167.72 -4.7898 0 0 0 0.23698 1 35011 35011 0 0 1 + 24454 23502 16037 16043 24205 24205 0.17332496050107693 KRWQQQWQQQW 11 Unmodified _KRWQQQWQQQW_ 0 0 0 REV__ENST00000253055.7_1_19:40718724-40719087:+|nuORF REV__ENST00000253055.7_1_19:40718724-40719087:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7767944335938 3 543.939291 1628.79604 NaN NaN NaN NaN NaN NaN NaN 164.33 1 159.54 159.04 160.04 -4.7898 0 0 0 0.23698 1 32834 32834 0.08335 0 1 + 24455 20116 16038 16044 24206 24206 0.006796481376113661 KRWQRWRRSYV 11 Unmodified _KRWQRWRRSYV_ 0 0 0 ENST00000216456.6_1_14:68126581-68129225:-|nuORF ENST00000216456.6_1_14:68126581-68129225:-|nuORF ENST00000216456.6_1_14:68126581-68129225:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2735595703125 3 540.970925 1619.89095 0.29824 0.00016134 2.1439 0.0011598 2.4421 0.0013211 541.3059670581117 137.03 0.20192 137.03 136.9 137.1 0 7 5 2 0 0 0 0.66298 1 27147 27147 0.094841 0 1 3302500 24456 8114 16039 16045 24207 24207 0.10579626399430708 KRWRERRYDEK 11 Unmodified _KRWRERRYDEK_ 0 0 0 REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2;REV__nc|ENSG00000152404|Q2TBE0-2|CWF19L2 REV__nc|ENSG00000152404|Q2TBE0-2|CWF19L2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.368408203125 2 811.437129 1620.85971 NaN NaN NaN NaN NaN NaN NaN 177.78 1 177.78 177.28 178.28 0 0 0 0 0.22632 1 36826 36826 0.50596 0 1 + 24457 13621;13622 16040 16046 24208 24208 0.07411008574672451 KRYFKLSH 8 Unmodified _KRYFKLSH_ 0 0 0 nc|ENSG00000184937|P19544-2|WT1;nc|ENSG00000184937|P19544-3|WT1;nc|ENSG00000184937|P19544-4|WT1;nc|ENSG00000184937|P19544|WT1;nc|ENSG00000184937|P19544-8|WT1;ENSG00000184937|ENST00000452863|WT1;nc|ENSG00000184937|P19544-9|WT1;nc|ENSG00000184937|P19544-6|WT1 nc|ENSG00000184937|P19544-2|WT1 nc|ENSG00000184937|P19544-2|WT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21026611328125 3 360.210059 1077.60835 NaN NaN NaN NaN NaN NaN NaN 50.595 1 47.714 47.214 48.214 -2.8811 0 0 0 0.21486 1 9600 9600 6.7232 2.7788 1 24458 6945 16041 16047 24209 24209 0.07264861671001199 KRYGSDRRL 9 Unmodified _KRYGSDRRL_ 0 0 0 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3272705078125 2 575.825621 1149.63669 0.16972 9.773E-05 0.27586 0.00015884 0.44558 0.00025658 575.82583273115 13.786 0.21343 13.786 13.685 13.898 0 14 5 3 0 0 0 0.13932 1 2013 2013 45.7 22.963 1 3550900 24459 7833 16042 16048 24210 24210 0.06785559580271183 KRYGSDRRL 9 Unmodified _KRYGSDRRL_ 0 0 0 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3275146484375 2 575.825621 1149.63669 -0.52377 -0.0003016 0.90434 0.00052074 0.38058 0.00021915 575.8261650431975 14.685 0.2052 13.513 13.426 13.631 -1.173 13 5 3 0 0 0 0.13932 1 2007 2007 45.7 22.963 1 2041200 24460 7833 16042 16048 24211 24211 0.06785559580271183 KRYITKEDV 9 Unmodified _KRYITKEDV_ 0 0 0 nc|ENSG00000121988|Q5FWF4-4|ZRANB3;nc|ENSG00000121988|Q5FWF4-2|ZRANB3;ENST00000403017.2_1_2:135957914-136028945:-|nuORF;nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3 nc|ENSG00000121988|Q5FWF4-4|ZRANB3 nc|ENSG00000121988|Q5FWF4-4|ZRANB3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3226318359375 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 123.83 1 119.23 118.73 119.73 -4.5926 0 0 0 0.19636 1 23831 23831 2.4985 0 1 24461 3202 16043 16049 24212 24212 0.06533086051786086 KRYKLKVLKTA 11 Unmodified _KRYKLKVLKTA_ 0 0 0 REV__ADAM28|p.D196Y|1|0.18|ENSG00000042980|chr8:24320245-24320245|G/T|missense_variant REV__ADAM28|p.D196Y|1|0.18|ENSG00000042980|chr8:24320245-24320245|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.16461181640625 4 337.726324 1346.87619 -0.38366 -0.00012957 3.326 0.0011233 2.9423 0.00099369 337.72762774459903 73.166 0.21351 69.856 69.743 69.956 -3.3107 7 5 2 0 0 0 0.96225 1 14242 14242 0.40827 0.31342 1 556470 + 24462 12942 16044 16050 24213 24213 0.2166274147873537 KRYKSDELL 9 Unmodified _KRYKSDELL_ 0 0 0 REV__ENSG00000171428|ENST00000307719|NAT1 REV__ENSG00000171428|ENST00000307719|NAT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3276977539062 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 125.25 1 125.25 124.75 125.75 0 0 0 0 0.19698 1 24699 24699 0.87518 0.84589 1 + 24463 18223 16045 16051 24214 24214 0.06533086051808823 KRYKSDELL 9 Unmodified _KRYKSDELL_ 0 0 0 REV__ENSG00000171428|ENST00000307719|NAT1 REV__ENSG00000171428|ENST00000307719|NAT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3272705078125 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 128.55 1 128.55 128.05 129.05 0 0 0 0 0.19649 1 25387 25387 0.12781 0 1 + 24464 18223 16045 16051 24215 24215 0.06533086051808823 KRYKSDELL 9 Unmodified _KRYKSDELL_ 0 0 0 REV__ENSG00000171428|ENST00000307719|NAT1 REV__ENSG00000171428|ENST00000307719|NAT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32763671875 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 130.35 1 125.71 125.21 126.21 -4.6359 0 0 0 0.19698 1 25690 25690 1.6919 0.62673 1 + 24465 18223 16045 16051 24216 24216 0.06533086051808823 KRYWYMLWRTK 11 Unmodified _KRYWYMLWRTK_ 0 0 0 REV__INPP1|p.L52Rfs*11|1|0.32|ENSG00000151689|chr2:190360253-190360254|-/CT|frameshift_variant REV__INPP1|p.L52Rfs*11|1|0.32|ENSG00000151689|chr2:190360253-190360254|-/CT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7835693359375 3 544.294017 1629.86022 0.33138 0.00018037 -3.4427 -0.0018738 -3.1113 -0.0016935 544.6262001581892 125.74 0.18109 125.74 125.64 125.82 0 6 4 2 0 0 0 0.89074 1 24795 24795 1.4551 1.3603 1 2718300 + 24466 23663 16046 16052 24217 24217 0.07048711970173827 KRYYGVNLFSF 11 Unmodified _KRYYGVNLFSF_ 0 0 0 REV__ENST00000464646.1_1_6:5002436-5003872:-|nuORF REV__ENST00000464646.1_1_6:5002436-5003872:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24786376953125 3 465.24695 1392.71902 NaN NaN NaN NaN NaN NaN NaN 74.49 1 71.126 70.626 71.626 -3.3643 0 0 0 0.22632 1 14532 14532 7.0341 6.8621 1 + 24467 21940 16047 16053 24218 24218 0.038370368685491485 KSAWEASFR 9 Unmodified _KSAWEASFR_ 0 0 0 ENST00000508965.5_1_4:81105136-81117516:+|nuORF ENST00000508965.5_1_4:81105136-81117516:+|nuORF ENST00000508965.5_1_4:81105136-81117516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2744140625 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 141.66 1 141.66 141.16 142.16 0 0 0 0 0.19687 1 28232 28232 8.1555 7.6391 1 24468 10723 16048 16054 24219 24219 -0.001803118423140404 KSCGRPGG 8 Unmodified _KSCGRPGG_ 0 0 0 ENSG00000182378|ENST00000381657|PLCXD1 ENSG00000182378|ENST00000381657|PLCXD1 ENSG00000182378|ENST00000381657|PLCXD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.209716796875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 94.691 1 94.691 94.191 95.191 0 0 0 0 0.2396 1 18545 18545 0.12286 0 1 24469 6787 16049 16055 24220 24220 -0.024761260455534284 KSDGGFAVAGA 11 Unmodified _KSDGGFAVAGA_ 0 0 0 REV__ENST00000529731.5_1_11:126081674-126104922:+|nuORF REV__ENST00000529731.5_1_11:126081674-126104922:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.266845703125 2 490.245806 978.47706 0.036064 1.768E-05 2.9638 0.001453 2.9998 0.0014706 490.2475382138208 41.757 0.31969 39.106 38.934 39.254 -2.651 12 8 2 0 0 0 0.54604 1 7498 7498 8.4443 0.28878 1 647280 + 24470 22747 16050 16056 24221 24221 -0.013039934875791914 KSDLRPMLY 9 Unmodified _KSDLRPMLY_ 0 0 0 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant;IPO11|p.S807Ffs*5|1|0.37|ENSG00000086200|chr5:62551287-62551288|-/T|frameshift_variant;IPO11|p.S807Lfs*22|2|0.29|ENSG00000086200|chr5:62551288-62551288|T/-|frameshift_variant;ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2047424316406 3 374.870715 1121.59032 0.28811 0.000108 -0.45595 -0.00017092 -0.16784 -6.2919E-05 374.8705163404453 79.428 0.52188 79.428 79.2 79.722 0 28 14 3 0 0 0 0.41444 1 15446 15446 24.882 12.641 1 2642600 24471 1691 16051 16057 24222 24222 0.0343835863395725 KSDLRPMLY 9 Unmodified _KSDLRPMLY_ 0 0 0 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant;IPO11|p.S807Ffs*5|1|0.37|ENSG00000086200|chr5:62551287-62551288|-/T|frameshift_variant;IPO11|p.S807Lfs*22|2|0.29|ENSG00000086200|chr5:62551288-62551288|T/-|frameshift_variant;ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2206115722656 3 374.870715 1121.59032 -0.2424 -9.0869E-05 0.14577 5.4643E-05 -0.096635 -3.6226E-05 374.8707708564455 82.809 0.7361 79.201 78.812 79.548 -3.6079 45 20 3 0 0 0 0.59368 1 16197 16197 13.519 3.3681 1 3416900 24472 1691 16051 16057 24223 24223 0.0343835863395725 KSDLRPMLY 9 Unmodified _KSDLRPMLY_ 0 0 0 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant;IPO11|p.S807Ffs*5|1|0.37|ENSG00000086200|chr5:62551287-62551288|-/T|frameshift_variant;IPO11|p.S807Lfs*22|2|0.29|ENSG00000086200|chr5:62551288-62551288|T/-|frameshift_variant;ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.20538330078125 3 374.870715 1121.59032 0.10486 3.9308E-05 -0.10555 -3.9567E-05 -0.00069291 -2.5975E-07 374.8706251200292 83.07 0.68537 79.197 78.883 79.569 -3.8736 43 19 3 0 0 0 0.4999 1 15791 15791 19.626 7.4512 1 2308200 24473 1691 16051 16057 24224 24224 0.0343835863395725 KSDLRPMLY 9 Unmodified _KSDLRPMLY_ 0 0 0 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant;IPO11|p.S807Ffs*5|1|0.37|ENSG00000086200|chr5:62551287-62551288|-/T|frameshift_variant;IPO11|p.S807Lfs*22|2|0.29|ENSG00000086200|chr5:62551288-62551288|T/-|frameshift_variant;ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2046203613281 3 374.870715 1121.59032 -0.7896 -0.000296 0.74263 0.00027839 -0.046963 -1.7605E-05 374.8709684582952 82.932 0.65427 79.234 78.9 79.554 -3.6985 42 18 3 0 0 0 0.61324 1 15789 15789 12.175 4.0192 1 2603300 24474 1691 16051 16057 24225 24225 0.0343835863395725 KSDLRPMLY 9 Unmodified _KSDLRPMLY_ 0 0 0 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant;IPO11|p.S807Ffs*5|1|0.37|ENSG00000086200|chr5:62551287-62551288|-/T|frameshift_variant;IPO11|p.S807Lfs*22|2|0.29|ENSG00000086200|chr5:62551288-62551288|T/-|frameshift_variant;ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.870715 1121.59032 -0.2424 -9.0869E-05 0.14577 5.4643E-05 -0.096635 -3.6226E-05 374.8707708564455 82.809 0.7361 79.201 78.812 79.548 -3.6079 -0.063811 9.2398E-05 NaN 24.882 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3416900 24475 1691 16051 16057 0.0343835863395725 KSDLRPMLY 9 Unmodified _KSDLRPMLY_ 0 0 0 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant;IPO11|p.S807Ffs*5|1|0.37|ENSG00000086200|chr5:62551287-62551288|-/T|frameshift_variant;IPO11|p.S807Lfs*22|2|0.29|ENSG00000086200|chr5:62551288-62551288|T/-|frameshift_variant;ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 374.870715 1121.59032 0.10486 3.9308E-05 -0.10555 -3.9567E-05 -0.00069291 -2.5975E-07 374.8706251200292 83.07 0.68537 79.197 78.883 79.569 -3.8736 -0.067974 -0.00019023 NaN 24.882 43 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2308200 24476 1691 16051 16057 0.0343835863395725 KSDLRPMLY 9 Unmodified _KSDLRPMLY_ 0 0 0 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant;IPO11|p.S807Ffs*5|1|0.37|ENSG00000086200|chr5:62551287-62551288|-/T|frameshift_variant;IPO11|p.S807Lfs*22|2|0.29|ENSG00000086200|chr5:62551288-62551288|T/-|frameshift_variant;ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11 IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 374.870715 1121.59032 -0.7896 -0.000296 0.74263 0.00027839 -0.046963 -1.7605E-05 374.8709684582952 82.932 0.65427 79.234 78.9 79.554 -3.6985 -0.030969 0.00076364 NaN 24.882 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2603300 24477 1691 16051 16057 0.0343835863395725 KSDSGKPYYY 10 Unmodified _KSDSGKPYYY_ 0 0 0 nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF nc|ENSG00000196504|O75400-3|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 603.7501220703125 2 604.285128 1206.5557 0.59572 0.00035998 -0.17571 -0.00010618 0.42001 0.0002538 604.285259100583 35.827 2.6237 33.433 33.127 35.751 -2.3938 247 74 6 0 0 0 0.89145 1 6843 6843 12.241 7.01 1 700950000 24478 7274 16052 16058 24226 24226 -0.039311859731242293 KSDSGKPYYY 10 Unmodified _KSDSGKPYYY_ 0 0 0 nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF nc|ENSG00000196504|O75400-3|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 604.285128 1206.5557 0.39447 0.00023837 -0.0069775 -4.2164E-06 0.3875 0.00023416 604.2852984710241 33.324 2.5932 33.324 33.059 35.653 0 -0.053263 6.9898E-06 NaN 12.241 212 74 6 NaN NaN NaN NaN 0 NaN NaN 0 722780000 24479 7274 16052 16058 -0.039311859731242293 KSDSGKPYYY 10 Unmodified _KSDSGKPYYY_ 0 0 0 nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF nc|ENSG00000196504|O75400-3|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 604.285128 1206.5557 0.48299 0.00029186 0.069168 4.1797E-05 0.55216 0.00033366 604.2854965071883 35.635 2.6933 33.382 33.09 35.784 -2.2527 0.0047766 9.9017E-05 NaN 12.241 268 77 7 NaN NaN NaN NaN 0 NaN NaN 0 761840000 24480 7274 16052 16058 -0.039311859731242293 KSDSGKPYYY 10 Unmodified _KSDSGKPYYY_ 0 0 0 nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF nc|ENSG00000196504|O75400-3|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 604.285128 1206.5557 0.39633 0.0002395 0.1019 6.1579E-05 0.49823 0.00030107 604.2855071681099 35.647 2.5912 33.37 33.072 35.663 -2.2766 -0.0072938 0.00013858 NaN 12.241 248 73 6 NaN NaN NaN NaN 0 NaN NaN 0 600010000 24481 7274 16052 16058 -0.039311859731242293 KSDTQNLLY 9 Unmodified _KSDTQNLLY_ 0 0 0 ENSG00000012232|ENST00000220562|EXTL3;EXTL3|p.Y472Tfs*37|1|0.34|ENSG00000012232|chr8:28717468-28717468|T/-|frameshift_variant ENSG00000012232|ENST00000220562|EXTL3 ENSG00000012232|ENST00000220562|EXTL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2797241210938 2 541.279846 1080.54514 -0.022688 -1.228E-05 0.0085487 4.6272E-06 -0.014139 -7.6532E-06 541.2797855744088 68.483 0.96635 68.483 68.035 69.002 0 74 26 4 0 0 0 0.029139 2 13230 13230;13278 82.529 25.058 1 16095000 24482 1088 16053 16059 24227;24228 24227 0.008088313724329055 KSDTQNLLY 9 Unmodified _KSDTQNLLY_ 0 0 0 ENSG00000012232|ENST00000220562|EXTL3;EXTL3|p.Y472Tfs*37|1|0.34|ENSG00000012232|chr8:28717468-28717468|T/-|frameshift_variant ENSG00000012232|ENST00000220562|EXTL3 ENSG00000012232|ENST00000220562|EXTL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2799682617188 2 541.279846 1080.54514 0.073492 3.9779E-05 -0.038554 -2.0869E-05 0.034937 1.8911E-05 541.2798297701883 71.746 0.95147 68.497 67.994 68.945 -3.2492 67 26 4 0 0 0 0.025708 2 13995 13947;13995 86.332 31.558 1 13991000 24483 1088 16053 16059 24229;24230 24230 0.008088313724329055 KSDTQNLLY 9 Unmodified _KSDTQNLLY_ 0 0 0 ENSG00000012232|ENST00000220562|EXTL3;EXTL3|p.Y472Tfs*37|1|0.34|ENSG00000012232|chr8:28717468-28717468|T/-|frameshift_variant ENSG00000012232|ENST00000220562|EXTL3 ENSG00000012232|ENST00000220562|EXTL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.280029296875 2 541.279846 1080.54514 0.36233 0.00019612 -0.39819 -0.00021553 -0.035857 -1.9409E-05 541.2796892084851 72.032 0.92005 68.404 67.883 68.803 -3.6275 60 25 3 0 0 0 0.037522 4 13617 13530;13534;13567;13617 76.825 35.56 1 9650600 24484 1088 16053 16059 24231;24232;24233;24234 24234 0.008088313724329055 KSDTQNLLY 9 Unmodified _KSDTQNLLY_ 0 0 0 ENSG00000012232|ENST00000220562|EXTL3;EXTL3|p.Y472Tfs*37|1|0.34|ENSG00000012232|chr8:28717468-28717468|T/-|frameshift_variant ENSG00000012232|ENST00000220562|EXTL3 ENSG00000012232|ENST00000220562|EXTL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2797241210938 2 541.279846 1080.54514 0.44347 0.00024004 -0.59379 -0.0003214 -0.15031 -8.1362E-05 541.2794762245662 71.903 0.76471 68.364 68.015 68.78 -3.5385 66 21 4 0 0 0 0.025708 5 13640 13590;13597;13600;13640;13683 86.332 74.216 1 13965000 24485 1088 16053 16059 24235;24236;24237;24238;24239 24238 0.008088313724329055 KSDVHLNFY 9 Unmodified _KSDVHLNFY_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21185302734375 3 374.857463 1121.55056 -0.10677 -4.0023E-05 -0.14159 -5.3077E-05 -0.24836 -9.3099E-05 374.8574255524618 84.785 1.8303 84.785 84.381 86.212 0 162 51 5 0 0 0 0.41444 1 16655 16655 24.882 6.5085 1 286660000 24486 1453 16054 16060 24240 24240 -0.005354450451022785 KSDVHLNFY 9 Unmodified _KSDVHLNFY_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.212158203125 3 374.857463 1121.55056 -0.49683 -0.00018624 0.23892 8.9562E-05 -0.25791 -9.6679E-05 374.85759996768286 88.197 1.7465 84.447 84.052 85.799 -3.7501 186 49 6 0 0 0 0.6297 1 16993 16993 34.222 6.9985 1 320480000 24487 1453 16054 16060 24241 24241 -0.005354450451022785 KSDVTNQQY 9 Unmodified _KSDVTNQQY_ 0 0 0 ENST00000497707.5_1_13:76104538-76111947:-|nuORF ENST00000497707.5_1_13:76104538-76111947:-|nuORF ENST00000497707.5_1_13:76104538-76111947:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2841186523438 2 541.759278 1081.504 0.27357 0.00014821 -0.036189 -1.9606E-05 0.23738 0.0001286 541.7591465789745 18.888 0.69627 18.888 18.335 19.031 0 37 19 4 0 0 0 0.02936 1 3063 3063 96.936 47.003 1 5587100 24488 10594 16055 16061 24242 24242 -0.033489296670495605 KSDVTNQQY 9 Unmodified _KSDVTNQQY_ 0 0 0 ENST00000497707.5_1_13:76104538-76111947:-|nuORF ENST00000497707.5_1_13:76104538-76111947:-|nuORF ENST00000497707.5_1_13:76104538-76111947:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2677001953125 2 541.759278 1081.504 0.48222 0.00026125 -0.37084 -0.00020091 0.11138 6.0343E-05 541.7590298455362 20.242 0.49326 18.846 18.653 19.146 -1.3966 34 13 4 0 0 0 0.12663 1 3363 3363 66.457 28.281 1 3484300 24489 10594 16055 16061 24243 24243 -0.033489296670495605 KSEDGRLIY 9 Unmodified _KSEDGRLIY_ 0 0 0 ENST00000520167.5_1_8:74888148-74891330:+|nuORF;nc|ENSG00000175606|Q9BUB7-3|TMEM70;ENSG00000175606|ENST00000312184|TMEM70 ENST00000520167.5_1_8:74888148-74891330:+|nuORF ENST00000520167.5_1_8:74888148-74891330:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2643432617188 2 540.787838 1079.56112 0.59029 0.00031922 -0.20728 -0.00011209 0.38301 0.00020713 540.7876671047107 44.942 0.6632 44.942 44.57 45.233 0 37 18 3 0 0 0 0.27464 1 8458 8458 43.982 37.79 1 2432500 24490 6425 16056 16062 24244 24244 0.024525376093379236 KSEDGRLIY 9 Unmodified _KSEDGRLIY_ 0 0 0 ENST00000520167.5_1_8:74888148-74891330:+|nuORF;nc|ENSG00000175606|Q9BUB7-3|TMEM70;ENSG00000175606|ENST00000312184|TMEM70 ENST00000520167.5_1_8:74888148-74891330:+|nuORF ENST00000520167.5_1_8:74888148-74891330:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.267333984375 2 540.787838 1079.56112 0.089941 4.8639E-05 -0.17877 -9.6678E-05 -0.08883 -4.8038E-05 540.7876026425055 47.783 0.66517 44.841 44.445 45.11 -2.9421 39 18 3 0 0 0 0.1428 1 8716 8716 30.703 30.022 1 2735700 24491 6425 16056 16062 24245 24245 0.024525376093379236 KSEDGRLIY 9 Unmodified _KSEDGRLIY_ 0 0 0 ENST00000520167.5_1_8:74888148-74891330:+|nuORF;nc|ENSG00000175606|Q9BUB7-3|TMEM70;ENSG00000175606|ENST00000312184|TMEM70 ENST00000520167.5_1_8:74888148-74891330:+|nuORF ENST00000520167.5_1_8:74888148-74891330:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.787838 1079.56112 0.1348 7.29E-05 0.012944 7.0002E-06 0.14775 7.9901E-05 540.7877163629188 47.801 0.7032 44.932 44.495 45.199 -2.869 0.05274 0.00019793 NaN 30.703 43 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3080800 24492 6425 16056 16062 0.024525376093379236 KSEMNVNMKY 10 Unmodified _KSEMNVNMKY_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7672729492188 2 622.294116 1242.57368 0.83714 0.00052095 -0.59244 -0.00036867 0.24471 0.00015228 622.2938200231617 56.995 0.34866 54.1 53.922 54.27 -2.8944 13 9 2 0 0 0 0.48122 1 10935 10935 30.703 13.591 1 896920 24493 2356 16057 16063 24246 24246 -0.03790510314297535 KSETSIHQY 9 Unmodified _KSETSIHQY_ 0 0 0 ENST00000478954.1_1_7:150210046-150210850:-|nuORF ENST00000478954.1_1_7:150210046-150210850:-|nuORF ENST00000478954.1_1_7:150210046-150210850:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7735595703125 2 546.769645 1091.52474 -0.72986 -0.00039907 0.1596 8.7267E-05 -0.57026 -0.0003118 546.7697253918928 20.783 0.76003 19.062 18.873 19.633 -1.7211 79 21 5 0 0 0 0.42844 1 3309 3309 24.021 4.7636 1 91853000 24494 10333 16058 16064 24247 24247 -0.017363392873676275 KSFLDGIYKA 10 Unmodified _KSFLDGIYKA_ 0 0 0 MTMR12|p.T303A|1|0.32|ENSG00000150712|chr5:32248116-32248116|T/C|missense_variant MTMR12|p.T303A|1|0.32|ENSG00000150712|chr5:32248116-32248116|T/C|missense_variant MTMR12|p.T303A|1|0.32|ENSG00000150712|chr5:32248116-32248116|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2119140625 3 381.213246 1140.61791 NaN NaN NaN NaN NaN NaN NaN 91.116 1 91.116 90.616 91.616 0 0 0 0 0.19577 1 17804 17804 19.626 3.8873 1 24495 12170 16059 16065 24248 24248 0.053225851658453394 KSFPRKEMWT 10 Unmodified _KSFPRKEMWT_ 0 0 0 REV__ENST00000589222.5_2_17:59469571-59469784:+|nuORF REV__ENST00000589222.5_2_17:59469571-59469784:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2285461425781 3 437.228902 1308.66488 NaN NaN NaN NaN NaN NaN NaN 130.07 1 125.24 124.74 125.74 -4.8355 0 0 0 2.8426 1 24973 24973 0.043787 0.030522 1 + 24496 23309 16060 16066 24249 24249 0.022891214453238717 KSFSTSGSLKV 11 Unmodified _KSFSTSGSLKV_ 0 0 0 nc|ENSG00000130856|Q9UL36-2|ZNF236;ZNF236|p.G1607Rfs*13|1|0.1|ENSG00000130856|chr18:76947552-76947553|-/CT|frameshift_variant;ZNF236|p.E1775Sfs*19|1|0.31|ENSG00000130856|chr18:76960761-76960761|G/-|frameshift_variant;nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236 nc|ENSG00000130856|Q9UL36-2|ZNF236 nc|ENSG00000130856|Q9UL36-2|ZNF236 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21551513671875 3 380.880156 1139.61864 -0.53402 -0.0002034 1.343 0.00051151 0.80895 0.00030811 381.2152332698317 39.432 0.6629 37.027 36.69 37.353 -2.4049 39 18 3 0 0 0 0.65515 1 7083 7083 3.0723 0.57378 1 1247900 24497 3646 16061 16067 24250 24250 0.05441379814874381 KSGLLCRVS 9 Unmodified _KSGLLCRVS_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7795715332031 2 481.776219 961.537886 0.36021 0.00017354 2.8345 0.0013656 3.1947 0.0015391 481.77775454943065 87.649 0.18024 83.654 83.515 83.695 -3.9953 6 4 2 0 0 0 0.60061 1 16685 16685 13.042 1.4022 1 395370 24498 3871 16062 16068 24251 24251 0.05557820291016924 KSGTILTDE 9 Unmodified _KSGTILTDE_ 0 0 0 REV__ENSG00000145113|ENST00000463781|MUC4 REV__ENSG00000145113|ENST00000463781|MUC4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 482.2550964355469 2 482.253297 962.492041 NaN NaN NaN NaN NaN NaN NaN 163.31 1 158.52 158.02 159.02 -4.7898 0 0 0 0.072322 1 32547 32547 1.6919 1.0105 1 + 24499 16822 16063 16069 24252 24252 0.00929453589753848 KSGYRRKP 8 Unmodified _KSGYRRKP_ 0 0 0 TRPC1|p.M339K|1|0.09|ENSG00000144935|chr3:142784759-142784759|T/A|missense_variant TRPC1|p.M339K|1|0.09|ENSG00000144935|chr3:142784759-142784759|T/A|missense_variant TRPC1|p.M339K|1|0.09|ENSG00000144935|chr3:142784759-142784759|T/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.03125 3 331.198042 990.572297 -0.28381 -9.3998E-05 2.4734 0.00081919 2.1896 0.00072519 331.19887206213775 19.865 0.41459 18.54 18.214 18.629 -1.3251 13 11 2 0 0 0 1.0252 1 3050 3050 3.2813 0 1 639600 24500 26524 16064 16070 24253 24253 0.0766340449413292 KSICVNCM 8 Unmodified _KSICVNCM_ 0 0 0 REV__ENST00000425081.2_1_17:1421064-1421190:+|nuORF REV__ENST00000425081.2_1_17:1421064-1421190:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 448.9608459472656 2 449.203184 896.391815 NaN NaN NaN NaN NaN NaN NaN 164.58 1 159.79 159.29 160.29 -4.7898 0 0 0 0.21486 1 32898 32898 4.3292 0 1 + 24501 21555 16065 16071 24254 24254 -0.06052521540902944 KSIFKGKSP 9 Unmodified _KSIFKGKSP_ 0 0 0 ENSG00000138823|ENST00000265517|MTTP;nc|ENSG00000138823|P55157-2|MTTP ENSG00000138823|ENST00000265517|MTTP ENSG00000138823|ENST00000265517|MTTP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 331.2094421386719 3 331.202682 990.586216 NaN NaN NaN NaN NaN NaN NaN 84.885 1 84.885 84.385 85.385 0 0 0 0 0.23508 1 16565 16565 2.2828 0.19677 1 24502 4213 16066 16072 24255 24255 0.09054637202564209 KSIHIIKFP 9 Unmodified _KSIHIIKFP_ 0 0 0 REV__ENST00000506932.1_1_4:2825262-2826487:+|nuORF REV__ENST00000506932.1_1_4:2825262-2826487:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2653198242188 2 541.839677 1081.6648 0.32903 0.00017828 0.63747 0.0003454 0.96649 0.00052368 542.3423059268766 150.1 0.17635 145.37 145.29 145.46 -4.7323 6 4 2 0 0 0 0.6226 1 29796 29796 4.897 0 1 1992900 + 24503 14498 16067 16073 24256 24256 0.1272348950765263 KSIRQKEKKLK 11 Unmodified _KSIRQKEKKLK_ 0 0 0 REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1 REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 693.3429565429688 2 693.451185 1384.88782 NaN NaN NaN NaN NaN NaN NaN 168.67 1 163.79 163.29 164.29 -4.873 0 0 0 0.22632 1 33263 33263 0.03141 0.030845 1 + 24504 25432 16068 16074 24257 24257 0.21076938502073972 KSKDKKRKR 9 Unmodified _KSKDKKRKR_ 0 0 0 SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-3|SRRM2;SRRM2|p.K237R|1|0.07|ENSG00000167978|chr16:2759372-2759372|A/G|missense_variant;ENST00000571372.1_1_16:2809069-2809404:+|nuORF;ENST00000570655.1_1_16:2809069-2809663:+|nuORF;ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENSG00000109536|ENST00000226798|FRG1 SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 587.7200317382812 2 587.380563 1172.74657 NaN NaN NaN NaN NaN NaN NaN 176.16 1 176.16 175.66 176.66 0 0 0 0 0.1963 1 36494 36494 0.0033805 0.0019993 1 24505 5863 16069 16075 24258 24258 0.1671098491947305 KSKGKKKRK 9 Unmodified _KSKGKKKRK_ 0 0 0 ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.2006530761719 3 363.252258 1086.73495 NaN NaN NaN NaN NaN NaN NaN 32.236 1 32.236 31.736 32.736 0 0 0 0 0.19631 1 5849 5849 0.20686 0 1 24506 222 16070 16076 24259 24259 0.19504787896130438 KSKKHKKKLK 10 Unmodified _KSKKHKKKLK_ 0 0 0 PRPF40A|p.S891L|1|0.27|ENSG00000196504|chr2:152657917-152657917|G/A|missense_variant PRPF40A|p.S891L|1|0.27|ENSG00000196504|chr2:152657917-152657917|G/A|missense_variant PRPF40A|p.S891L|1|0.27|ENSG00000196504|chr2:152657917-152657917|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 418.2913818359375 3 418.290713 1251.85031 NaN NaN NaN NaN NaN NaN NaN 51.287 1 48.236 47.736 48.736 -3.0517 0 0 0 0.22588 1 9447 9447 0.62683 0 1 24507 12833 16071 16077 24260 24260 0.23445892027098125 KSKKKKPKD 9 Unmodified _KSKKKKPKD_ 0 0 0 nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3;ENST00000472398.5_1_21:38529111-38558109:+|nuORF;TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant nc|ENSG00000182670|P53804-3|TTC3 nc|ENSG00000182670|P53804-3|TTC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7806396484375 2 543.853316 1085.69208 NaN NaN NaN NaN NaN NaN NaN 126.3 1 121.7 121.2 122.2 -4.5986 0 0 0 0.19622 1 24901 24901 0.96228 0.954 1 24508 6803 16072 16078 24261 24261 0.152659730480309 KSKKKKRRKKK 11 Unmodified _KSKKKKRRKKK_ 0 0 0 REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 722.0088500976562 2 722.009536 1442.00452 NaN NaN NaN NaN NaN NaN NaN 176.15 1 171.27 170.77 171.77 -4.8739 0 0 0 0.22632 1 35035 35035 0 0 1 + 24509 15230 16073 16079 24262 24262 0.30119721512437536 KSKKKMLF 8 Unmodified _KSKKKMLF_ 0 0 0 ENST00000260665.11_1_2:44145453-44145528:-|nuORF ENST00000260665.11_1_2:44145453-44145528:-|nuORF ENST00000260665.11_1_2:44145453-44145528:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.212158203125 3 337.212412 1008.61541 NaN NaN NaN NaN NaN NaN NaN 78.442 1 78.442 77.942 78.942 0 0 0 0 0.21486 1 15267 15267 0.45834 0 1 24510 8284 16074 16080 24263 24263 0.111444582271929 KSKKVCKLL 9 Unmodified _KSKKVCKLL_ 0 0 0 REV__SUSD3|p.R138Q|1|0.15|ENSG00000157303|chr9:93077981-93077981|G/A|missense_variant REV__SUSD3|p.R138Q|1|0.15|ENSG00000157303|chr9:93077981-93077981|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6905517578125 2 523.841362 1045.66817 NaN NaN NaN NaN NaN NaN NaN 123.07 1 118.49 117.99 118.99 -4.5757 0 0 0 0.19631 1 24262 24262 0.029283 0.029283 1 + 24511 17290 16075 16081 24264 24264 0.14716416290002599 KSKNWVYKV 9 Unmodified _KSKNWVYKV_ 0 0 0 ENST00000575268.1_1_17:7286579-7286684:+|nuORF ENST00000575268.1_1_17:7286579-7286684:+|nuORF ENST00000575268.1_1_17:7286579-7286684:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.33349609375 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 122.58 1 122.58 122.08 123.08 0 0 0 0 0.23508 1 24161 24161 9.3831 1.2276 1 24512 11452 16076 16082 24265 24265 0.08057997639639325 KSKSKITQ 8 Unmodified _KSKSKITQ_ 0 0 0 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 307.1946105957031 3 307.190553 918.549831 NaN NaN NaN NaN NaN NaN NaN 105.36 1 101.27 100.77 101.77 -4.0913 0 0 0 0.21486 1 20266 20266 0.35063 0 1 + 24513 18006 16077 16083 24266 24266 0.08729760305834589 KSLEEICLF 9 Unmodified _KSLEEICLF_ 0 0 0 ENST00000443417.1_1_9:102879039-102879699:-|nuORF ENST00000443417.1_1_9:102879039-102879699:-|nuORF ENST00000443417.1_1_9:102879039-102879699:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.283203125 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 74.383 1 71.019 70.519 71.519 -3.3643 0 0 0 0.21844 1 14509 14509 18.146 1.2041 1 24514 9913 16078 16084 24267 24267 0.015478476484759085 KSLEEICLF 9 Unmodified _KSLEEICLF_ 0 0 0 ENST00000443417.1_1_9:102879039-102879699:-|nuORF ENST00000443417.1_1_9:102879039-102879699:-|nuORF ENST00000443417.1_1_9:102879039-102879699:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.283447265625 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 74.82 1 71.144 70.644 71.644 -3.6764 0 0 0 0.12123 1 14145 14145 34.402 12.655 1 24515 9913 16078 16084 24268 24268 0.015478476484759085 KSLEEICLF 9 Unmodified _KSLEEICLF_ 0 0 0 ENST00000443417.1_1_9:102879039-102879699:-|nuORF ENST00000443417.1_1_9:102879039-102879699:-|nuORF ENST00000443417.1_1_9:102879039-102879699:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.282958984375 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 74.615 1 71.021 70.521 71.521 -3.594 0 0 0 0.17061 1 14173 14173 27.629 11.782 1 24516 9913 16078 16084 24269 24269 0.015478476484759085 KSLQEEPV 8 Unmodified _KSLQEEPV_ 0 0 0 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24713134765625 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 110.32 1 106.13 105.63 106.63 -4.1826 0 0 0 0.21486 1 21233 21233 12.532 0.89125 1 24517 2420 16079 16085 24270 24270 0.01945774797957256 KSLSRIVHL 9 Unmodified _KSLSRIVHL_ 0 0 0 nc|ENSG00000168658|Q502W6-6|VWA3B nc|ENSG00000168658|Q502W6-6|VWA3B nc|ENSG00000168658|Q502W6-6|VWA3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.1708984375 3 351.557348 1051.65021 -0.34371 -0.00012083 0.21368 7.512E-05 -0.13003 -4.5715E-05 351.5574046835791 47.781 0.85093 44.912 44.531 45.382 -2.869 55 23 3 0 0 0 0.50137 1 9049 9049 2.8827 0.25143 1 3019900 24518 12452 16080 16086 24271 24271 0.12645417359499334 KSLSVVTEV 9 Unmodified _KSLSVVTEV_ 0 0 0 ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;ANAPC4|p.R419Sfs*21|1|0.18|ENSG00000053900|chr4:25403004-25403005|-/T|frameshift_variant;nc|ENSG00000053900|Q9UJX5-2|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7833557128906 2 481.281857 960.549162 0.44778 0.00021551 -0.4447 -0.00021403 0.0030756 1.4802E-06 481.28150918570765 79.548 0.48808 79.548 79.34 79.828 0 24 13 3 0 0 0 0.35556 2 15504 15457;15504 12.241 2.6967 1 1912700 24519 1259 16081 16087 24272;24273 24273 0.06730920866152701 KSLSVVTEV 9 Unmodified _KSLSVVTEV_ 0 0 0 ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;ANAPC4|p.R419Sfs*21|1|0.18|ENSG00000053900|chr4:25403004-25403005|-/T|frameshift_variant;nc|ENSG00000053900|Q9UJX5-2|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7734375 2 481.281857 960.549162 0.032904 1.5836E-05 0.24236 0.00011664 0.27526 0.00013248 481.2818768342257 82.743 0.63844 79.135 78.775 79.413 -3.6079 41 17 3 0 0 0 0.25976 2 16174 16174;16181 17.113 8.9574 1 2621100 24520 1259 16081 16087 24274;24275 24274 0.06730920866152701 KSMEDKGMTN 10 Unmodified _KSMEDKGMTN_ 0 0 0 nc|ENSG00000162267|Q06033-2|ITIH3;ENSG00000162267|ENST00000449956|ITIH3 nc|ENSG00000162267|Q06033-2|ITIH3 nc|ENSG00000162267|Q06033-2|ITIH3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2086486816406 3 380.838975 1139.49509 0.79672 0.00030342 0.49329 0.00018786 1.29 0.00049128 380.83919587333173 24.568 1.143 22.92 22.402 23.545 -1.6482 53 32 2 0 0 0 0.52989 1 4371 4371 1.9064 1.641 1 612170 24521 5319 16082 16088 24276 24276 -0.06907362619358537 KSMEDKGMTN 10 Unmodified _KSMEDKGMTN_ 0 0 0 nc|ENSG00000162267|Q06033-2|ITIH3;ENSG00000162267|ENST00000449956|ITIH3 nc|ENSG00000162267|Q06033-2|ITIH3 nc|ENSG00000162267|Q06033-2|ITIH3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.838975 1139.49509 0.79672 0.00030342 0.49329 0.00018786 1.29 0.00049128 380.83919587333173 24.568 1.143 22.92 22.402 23.545 -1.6482 -0.061738 -0.00035339 NaN 1.9064 53 32 2 NaN NaN NaN NaN 0 NaN NaN 0 612170 24522 5319 16082 16088 -0.06907362619358537 KSMEDKGMTN 10 Unmodified _KSMEDKGMTN_ 0 0 0 nc|ENSG00000162267|Q06033-2|ITIH3;ENSG00000162267|ENST00000449956|ITIH3 nc|ENSG00000162267|Q06033-2|ITIH3 nc|ENSG00000162267|Q06033-2|ITIH3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.838975 1139.49509 0.021112 8.0403E-06 1.1832 0.0004506 1.2043 0.00045864 380.83938043126835 24.594 1.4497 23.06 22.159 23.609 -1.5342 0.078971 0.00043482 NaN 1.9064 79 37 3 NaN NaN NaN NaN 0 NaN NaN 0 1255100 24523 5319 16082 16088 -0.06907362619358537 KSMGPKKVG 9 Unmodified _KSMGPKKVG_ 0 0 0 nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000464548.1_1_3:184046470-184049185:+|nuORF nc|ENSG00000114867|Q04637-4|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.22564697265625 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 133.34 1 133.34 132.84 133.84 0 0 0 0 0.23508 1 26380 26380 0.26902 0.26902 1 24524 2815 16083 16089 24277 24277 0.06402721779352305 KSMGPKKVG 9 Unmodified _KSMGPKKVG_ 0 0 0 nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000464548.1_1_3:184046470-184049185:+|nuORF nc|ENSG00000114867|Q04637-4|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.20465087890625 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 133.68 1 133.68 133.18 134.18 0 0 0 0 0.23508 1 26448 26448 1.1933 0.735 1 24525 2815 16083 16089 24278 24278 0.06402721779352305 KSPDNLLS 8 Unmodified _KSPDNLLS_ 0 0 0 REV__ENST00000379328.7_1_10:8097346-8097625:+|nuORF REV__ENST00000379328.7_1_10:8097346-8097625:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2275390625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 74.018 1 74.018 73.518 74.518 0 0 0 0 0.22847 1 14365 14365 10.074 1.9184 1 + 24526 21135 16084 16090 24279 24279 0.019015056264720442 KSPDVDKSPN 10 Unmodified _KSPDVDKSPN_ 0 0 0 REV__nc|ENSG00000185860|Q86UF4-2|CCDC190 REV__nc|ENSG00000185860|Q86UF4-2|CCDC190 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.776123046875 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 145.35 1 140.41 139.91 140.91 -4.9445 0 0 0 2.8426 1 28100 28100 14.405 13.191 1 + 24527 18991 16085 16091 24280 24280 -0.004043566329301029 KSPVKPPPCKA 11 Unmodified _KSPVKPPPCKA_ 0 0 0 REV__ENST00000470671.1_1_X:71475533-71493153:-|nuORF REV__ENST00000470671.1_1_X:71475533-71493153:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3326416015625 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 133.1 1 133.1 132.6 133.6 0 0 0 0 0.22914 1 26326 26326 8.9762 0.23084 1 + 24528 22033 16086 16092 24281 24281 0.08394924422009353 KSQQQVSAPA 10 Unmodified _KSQQQVSAPA_ 0 0 0 REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2777709960938 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 116.95 1 112.37 111.87 112.87 -4.5815 0 0 0 0.19577 1 22439 22439 29.082 0 1 + 24529 15888 16087 16093 24282 24282 0.021153669495106442 KSQQQVSAPA 10 Unmodified _KSQQQVSAPA_ 0 0 0 REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2810668945312 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 116.97 1 112.61 112.11 113.11 -4.3585 0 0 0 0.22518 1 22518 22518 22.736 2.2827 1 + 24530 15888 16087 16093 24283 24283 0.021153669495106442 KSQVHPVL 8 Unmodified _KSQVHPVL_ 0 0 0 ENSG00000182325|ENST00000331890|FBXL6;ENST00000524492.5_1_8:145581065-145581518:-|nuORF;ENST00000530142.5_1_8:145581065-145582036:-|nuORF ENSG00000182325|ENST00000331890|FBXL6 ENSG00000182325|ENST00000331890|FBXL6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7513122558594 2 454.271627 906.528701 0.25632 0.00011644 -0.1418 -6.4418E-05 0.11452 5.2023E-05 454.2715273607033 33.543 0.52582 33.543 33.234 33.76 0 26 14 2 0 0 0 0.38287 1 6124 6124 46.021 1.6139 1 3987100 24531 6783 16088 16094 24284 24284 0.07169794996980272 KSQVHPVL 8 Unmodified _KSQVHPVL_ 0 0 0 ENSG00000182325|ENST00000331890|FBXL6;ENST00000524492.5_1_8:145581065-145581518:-|nuORF;ENST00000530142.5_1_8:145581065-145582036:-|nuORF ENSG00000182325|ENST00000331890|FBXL6 ENSG00000182325|ENST00000331890|FBXL6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7476501464844 2 454.271627 906.528701 -0.4304 -0.00019552 0.61934 0.00028135 0.18895 8.5834E-05 454.27186151887685 35.57 0.60622 33.176 32.845 33.451 -2.3938 34 16 3 0 0 0 0.44257 1 6559 6559 49.933 8.0934 1 3536400 24532 6783 16088 16094 24285 24285 0.07169794996980272 KSQVHPVL 8 Unmodified _KSQVHPVL_ 0 0 0 ENSG00000182325|ENST00000331890|FBXL6;ENST00000524492.5_1_8:145581065-145581518:-|nuORF;ENST00000530142.5_1_8:145581065-145582036:-|nuORF ENSG00000182325|ENST00000331890|FBXL6 ENSG00000182325|ENST00000331890|FBXL6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7474670410156 2 454.271627 906.528701 0.10528 4.7828E-05 0.20922 9.5041E-05 0.3145 0.00014287 454.2716422488484 35.488 0.58514 33.235 32.881 33.466 -2.2527 38 16 3 0 0 0 0.44257 1 6261 6261 49.933 8.0934 1 3946700 24533 6783 16088 16094 24286 24286 0.07169794996980272 KSRGAGCA 8 Unmodified _KSRGAGCA_ 0 0 0 REV__ENSG00000185290|ENST00000329309|NUPR2 REV__ENSG00000185290|ENST00000329309|NUPR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2126770019531 2 375.18978 748.365007 NaN NaN NaN NaN NaN NaN NaN 59.095 1 55.781 55.281 56.281 -3.3139 0 0 0 0.23899 1 10990 10990 1.3295 1.0225 1 + 24534 18954 16089 16095 24287 24287 -0.01924126045560115 KSRGFSRRAS 10 Unmodified _KSRGFSRRAS_ 0 0 0 REV__nc|ENSG00000159788|O14924-6|RGS12 REV__nc|ENSG00000159788|O14924-6|RGS12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3216552734375 2 576.323245 1150.63194 NaN NaN NaN NaN NaN NaN NaN 106.79 1 102.53 102.03 103.03 -4.2638 0 0 0 2.8426 1 21023 21023 1.9275 1.7202 1 + 24535 17381 16090 16096 24288 24288 0.06264675437523692 KSRHLKKIRKF 11 Unmodified _KSRHLKKIRKF_ 0 0 0 ENST00000340535.11_1_1:222824030-222824207:+|nuORF ENST00000340535.11_1_1:222824030-222824207:+|nuORF ENST00000340535.11_1_1:222824030-222824207:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2525634765625 3 480.98065 1439.92012 NaN NaN NaN NaN NaN NaN NaN 32.059 1 29.911 29.411 30.411 -2.1483 0 0 0 0.23698 1 5542 5542 0.40827 0.31342 1 24536 8849 16091 16097 24289 24289 0.21775770695717256 KSRKATTK 8 Unmodified _KSRKATTK_ 0 0 0 REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 307.1942443847656 3 307.194298 918.561064 NaN NaN NaN NaN NaN NaN NaN 176.46 1 171.59 171.09 172.09 -4.8739 0 0 0 0.21486 1 35102 35102 0 0 1 + 24537 16618 16092 16098 24290 24290 0.09852582399969378 KSRKKKKSTK 10 Unmodified _KSRKKKKSTK_ 0 0 0 REV__nc|ENSG00000153487|Q9UK53-3|ING1 REV__nc|ENSG00000153487|Q9UK53-3|ING1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 609.8904418945312 2 609.903871 1217.79319 NaN NaN NaN NaN NaN NaN NaN 170.29 1 170.29 169.79 170.79 0 0 0 0 0.22588 1 35007 35007 1.3295 0.80477 1 + 24538 17148 16093 16099 24291 24291 0.19300424750736056 KSRNRASL 8 Unmodified _KSRNRASL_ 0 0 0 ENST00000294732.11_1_1:197104276-197104345:-|nuORF ENST00000294732.11_1_1:197104276-197104345:-|nuORF ENST00000294732.11_1_1:197104276-197104345:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.23309326171875 3 311.185914 930.535912 NaN NaN NaN NaN NaN NaN NaN 120.21 1 120.21 119.71 120.71 0 0 0 0 0.21486 1 23696 23696 0.40072 0 1 24539 8490 16094 16100 24292 24292 0.06786527597398617 KSRQYFEATFR 11 Unmodified _KSRQYFEATFR_ 0 0 0 REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|30|2|sense REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|30|2|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7305603027344 3 478.249242 1431.7259 NaN NaN NaN NaN NaN NaN NaN 161.19 1 161.19 160.69 161.69 0 0 0 0 0.22632 1 32371 32371 1.4551 0 1 + 24540 23763 16095 16101 24293 24293 0.027303497490947848 KSRRATAAA 9 Unmodified _KSRRATAAA_ 0 0 0 REV__nc|ENSG00000171813|Q6NUJ5-2|PWWP2B REV__nc|ENSG00000171813|Q6NUJ5-2|PWWP2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2370910644531 3 311.185914 930.535912 NaN NaN NaN NaN NaN NaN NaN 12.705 1 12.705 12.205 13.205 0 0 0 0 0.23508 1 1789 1789 0 0 1 + 24541 18252 16096 16102 24294 24294 0.06786527597387249 KSRRATAAA 9 Unmodified _KSRRATAAA_ 0 0 0 REV__nc|ENSG00000171813|Q6NUJ5-2|PWWP2B REV__nc|ENSG00000171813|Q6NUJ5-2|PWWP2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.22161865234375 3 311.185914 930.535912 NaN NaN NaN NaN NaN NaN NaN 10.563 1 9.4694 8.9694 9.9694 -1.0936 0 0 0 0.23508 1 1208 1208 0 0 1 + 24542 18252 16096 16102 24295 24295 0.06786527597387249 KSRRATAAA 9 Unmodified _KSRRATAAA_ 0 0 0 REV__nc|ENSG00000171813|Q6NUJ5-2|PWWP2B REV__nc|ENSG00000171813|Q6NUJ5-2|PWWP2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.2044982910156 3 311.185914 930.535912 NaN NaN NaN NaN NaN NaN NaN 10.689 1 9.5951 9.0951 10.095 -1.0936 0 0 0 0.23508 1 1230 1230 0 0 1 + 24543 18252 16096 16102 24296 24296 0.06786527597387249 KSSFTIPK 8 Unmodified _KSSFTIPK_ 0 0 0 ENST00000550589.1_1_12:82746932-82748399:-|nuORF ENST00000550589.1_1_12:82746932-82748399:-|nuORF ENST00000550589.1_1_12:82746932-82748399:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 303.1851501464844 3 303.179766 906.517468 NaN NaN NaN NaN NaN NaN NaN 101.86 1 97.843 97.343 98.343 -4.0212 0 0 0 0.21486 1 19574 19574 2.7352 1.0826 1 24544 11174 16097 16103 24297 24297 0.06046972902845482 KSSGKYINKG 10 Unmodified _KSSGKYINKG_ 0 0 0 MNS1|p.E471Rfs*32|1|0.28|ENSG00000138587|chr15:56429179-56429179|T/-|frameshift_variant MNS1|p.E471Rfs*32|1|0.28|ENSG00000138587|chr15:56429179-56429179|T/-|frameshift_variant MNS1|p.E471Rfs*32|1|0.28|ENSG00000138587|chr15:56429179-56429179|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2626953125 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 108.51 1 104.06 103.56 104.56 -4.4518 0 0 0 0.22559 1 20827 20827 17.113 2.2746 1 24545 12153 16098 16104 24298 24298 0.05568530363279933 KSSPEYAKLV 10 Unmodified _KSSPEYAKLV_ 0 0 0 tr|U7SSC8|U7SSC8_FUSNUPolaraminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01586PE=3SV=1 tr|U7SSC8|U7SSC8_FUSNUPolaraminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01586PE=3SV=1 tr|U7SSC8|U7SSC8_FUSNUPolaraminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01586PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21307373046875 3 374.544885 1120.61282 0.076398 2.8614E-05 -0.22923 -8.5856E-05 -0.15283 -5.7241E-05 374.5447832844722 43.139 0.5494 43.139 42.883 43.433 0 47 15 4 0 0 0 0.25854 1 8053 8053 19.362 0 1 8968900 24546 26097 16099 16105 24299 24299 0.057342813032164486 KSVFLLFRGL 10 Unmodified _KSVFLLFRGL_ 0 0 0 ENST00000366525.8_2_1:245025904-245026177:-|nuORF ENST00000366525.8_2_1:245025904-245026177:-|nuORF ENST00000366525.8_2_1:245025904-245026177:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2620239257812 2 590.366059 1178.71756 NaN NaN NaN NaN NaN NaN NaN 156.98 1 152.19 151.69 152.69 -4.7885 0 0 0 2.8426 1 31218 31218 0.69767 0 1 24547 9041 16100 16106 24300 24300 0.13535447570461656 KSVKFFST 8 Unmodified _KSVKFFST_ 0 0 0 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1811218261719 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 86.018 1 86.018 85.518 86.518 0 0 0 0 0.21486 1 16788 16788 1.4819 0.15237 1 + 24548 19412 16101 16107 24301 24301 0.04390972902854173 KSVLSPGS 8 Unmodified _KSVLSPGS_ 0 0 0 ENST00000497039.1_1_2:65298581-65300050:+|nuORF;nc|ENSG00000011523|Q76N32-2|CEP68;ENSG00000011523|ENST00000377990|CEP68 ENST00000497039.1_1_2:65298581-65300050:+|nuORF ENST00000497039.1_1_2:65298581-65300050:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7203369140625 2 387.721436 773.428318 -0.42911 -0.00016638 0.57334 0.0002223 0.14423 5.5921E-05 387.72155409995565 67.776 0.59303 67.776 67.514 68.107 0 27 16 2 0 0 0 0.72428 1 13061 13061 10.824 0 1 2117700 24549 1081 16102 16108 24302 24302 0.032541379433382644 KSVLSPGS 8 Unmodified _KSVLSPGS_ 0 0 0 ENST00000497039.1_1_2:65298581-65300050:+|nuORF;nc|ENSG00000011523|Q76N32-2|CEP68;ENSG00000011523|ENST00000377990|CEP68 ENST00000497039.1_1_2:65298581-65300050:+|nuORF ENST00000497039.1_1_2:65298581-65300050:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7207946777344 2 387.721436 773.428318 -0.33443 -0.00012967 0.48854 0.00018942 0.15412 5.9754E-05 387.72155848929964 70.926 0.67206 67.677 67.285 67.957 -3.2492 30 18 2 0 0 0 0.72428 1 13751 13751 10.824 0 1 2917400 24550 1081 16102 16108 24303 24303 0.032541379433382644 KSVLSPGS 8 Unmodified _KSVLSPGS_ 0 0 0 ENST00000497039.1_1_2:65298581-65300050:+|nuORF;nc|ENSG00000011523|Q76N32-2|CEP68;ENSG00000011523|ENST00000377990|CEP68 ENST00000497039.1_1_2:65298581-65300050:+|nuORF ENST00000497039.1_1_2:65298581-65300050:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7215881347656 2 387.721436 773.428318 -0.28554 -0.00011071 0.39557 0.00015337 0.11003 4.2662E-05 387.7215406669897 71.24 0.70171 67.773 67.486 68.187 -3.467 33 19 2 0 0 0 0.72428 1 13464 13464 10.824 0 1 1703700 24551 1081 16102 16108 24304 24304 0.032541379433382644 KSVPVRRR 8 Unmodified _KSVPVRRR_ 0 0 0 nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122-2|CLASP2;CLASP2|p.M744Nfs*4|1|0.19|ENSG00000163539|chr3:33560868-33560869|-/T|frameshift_variant;CLASP2|p.M744Wfs*33|2|0.29|ENSG00000163539|chr3:33560869-33560869|T/-|frameshift_variant;CLASP2|p.L1169Ffs*6|1|0.14|ENSG00000163539|chr3:33510729-33510730|-/A|frameshift_variant nc|ENSG00000163539|O75122|CLASP2 nc|ENSG00000163539|O75122|CLASP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 333.210693359375 3 333.217437 996.630481 NaN NaN NaN NaN NaN NaN NaN 89.863 1 86.085 85.585 86.585 -3.7779 0 0 0 0.21486 1 17197 17197 1.4819 0 1 24552 5439 16103 16109 24305 24305 0.1320308613941279 KSVSMGISP 9 Unmodified _KSVSMGISP_ 0 0 0 ENST00000252711.6_1_2:240900063-240900423:-|nuORF ENST00000252711.6_1_2:240900063-240900423:-|nuORF ENST00000252711.6_1_2:240900063-240900423:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.2584228515625 2 453.241678 904.468803 -0.35481 -0.00016082 0.52566 0.00023825 0.17085 7.7435E-05 453.2418703818831 19.623 0.51961 18.298 17.968 18.487 -1.3251 18 14 2 0 0 0 0.76584 1 2964 2964 3.2813 0.39209 1 314420 24553 8228 16104 16110 24306 24306 0.012747362714549126 KSVTLWLP 8 Unmodified _KSVTLWLP_ 0 0 0 ENST00000493762.1_1_3:169650279-169650495:+|nuORF ENST00000493762.1_1_3:169650279-169650495:+|nuORF ENST00000493762.1_1_3:169650279-169650495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.191162109375 3 315.191894 942.553853 NaN NaN NaN NaN NaN NaN NaN 88.499 1 84.706 84.206 85.206 -3.7926 0 0 0 0.21486 1 17313 17313 1.4819 0 1 24554 10549 16105 16111 24307 24307 0.08027849799555042 KSVTRLKYV 9 Unmodified _KSVTRLKYV_ 0 0 0 REV__ENST00000589799.5_1_19:44740380-44740701:-|nuORF REV__ENST00000589799.5_1_19:44740380-44740701:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.778564453125 2 547.340041 1092.66553 0.33292 0.00018222 1.739 0.00095182 2.0719 0.001134 547.3414889150298 145.24 0.20418 145.24 145.07 145.27 0 7 5 2 0 0 0 0.6215 1 29008 29008 0.12781 0.10161 1 1792300 + 24555 23314 16106 16112 24308 24308 0.12290284156688358 KSVVVKKKK 9 Unmodified _KSVVVKKKK_ 0 0 0 nc|ENSG00000053918|P51787-2|KCNQ1;ENSG00000053918|ENST00000155840|KCNQ1;KCNQ1-GALNTL6|1|fusion nc|ENSG00000053918|P51787-2|KCNQ1 nc|ENSG00000053918|P51787-2|KCNQ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2808837890625 2 522.368601 1042.72265 0.43302 0.0002262 3.714 0.0019401 4.147 0.0021663 522.3686406822945 153.43 0.20871 148.21 148.07 148.28 -5.2209 6 5 2 0 0 0 0.88433 1 29732 29732 0 0 1 727930 24556 1260 16107 16113 24309 24309 0.20299751433071833 KSVWSHTV 8 Unmodified _KSVWSHTV_ 0 0 0 REV__ENST00000535815.5_1_14:91710709-91710778:-|nuORF REV__ENST00000535815.5_1_14:91710709-91710778:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.03973388671875 3 315.171382 942.492316 NaN NaN NaN NaN NaN NaN NaN 66.323 1 66.323 65.823 66.823 0 0 0 0 0.21486 1 12806 12806 1.4819 0 1 + 24557 22812 16108 16114 24310 24310 0.018769181002653568 KSWNKKFYDY 10 Unmodified _KSWNKKFYDY_ 0 0 0 ENST00000530104.2_1_11:111946298-111951307:+|nuORF;nc|ENSG00000150776|Q6ZUT1-3|NKAPD1;nc|ENSG00000150776|Q6ZUT1|NKAPD1;ENSG00000150776|ENST00000393047|NKAPD1 ENST00000530104.2_1_11:111946298-111951307:+|nuORF ENST00000530104.2_1_11:111946298-111951307:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23223876953125 3 460.231189 1377.67174 NaN NaN NaN NaN NaN NaN NaN 16.535 1 15.319 14.819 15.819 -1.2159 0 0 0 2.8426 1 2606 2606 0 0 1 24558 4837 16109 16115 24311 24311 -0.0019924240241380176 KSWNKKFYDY 10 Unmodified _KSWNKKFYDY_ 0 0 0 ENST00000530104.2_1_11:111946298-111951307:+|nuORF;nc|ENSG00000150776|Q6ZUT1-3|NKAPD1;nc|ENSG00000150776|Q6ZUT1|NKAPD1;ENSG00000150776|ENST00000393047|NKAPD1 ENST00000530104.2_1_11:111946298-111951307:+|nuORF ENST00000530104.2_1_11:111946298-111951307:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2327880859375 3 460.231189 1377.67174 NaN NaN NaN NaN NaN NaN NaN 139.93 1 134.98 134.48 135.48 -4.952 0 0 0 2.8426 1 26925 26925 0.063865 0 1 24559 4837 16109 16115 24312 24312 -0.0019924240241380176 KSYLTRKP 8 Unmodified _KSYLTRKP_ 0 0 0 REV__ENSG00000164091|ENST00000296490|WDR82 REV__ENSG00000164091|ENST00000296490|WDR82 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 331.041015625 3 331.534431 991.581465 -1.6731 -0.00055468 1.5946 0.00052867 -0.07843 -2.6002E-05 331.53497724546975 19.599 0.23796 17.964 17.845 18.083 -1.6351 10 6 2 0 0 0 1.0252 1 2974 2974 6.2058 0 1 701060 + 24560 17650 16110 16116 24313 24313 0.08533753059805349 KSYTKSLDH 9 Unmodified _KSYTKSLDH_ 0 0 0 ENST00000475821.1_1_1:101702507-101704451:+|nuORF ENST00000475821.1_1_1:101702507-101704451:+|nuORF ENST00000475821.1_1_1:101702507-101704451:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.1997985839844 3 360.189101 1077.54547 -0.19112 -6.8841E-05 0.24661 8.8828E-05 0.05549 1.9987E-05 360.18918067955843 27.837 0.58468 27.837 27.562 28.147 0 45 16 4 0 0 0 0.87497 1 4866 4866 8.1555 0.54658 1 4504700 24561 10277 16111 16117 24314 24314 0.009802510922781948 KSYTKSLDH 9 Unmodified _KSYTKSLDH_ 0 0 0 ENST00000475821.1_1_1:101702507-101704451:+|nuORF ENST00000475821.1_1_1:101702507-101704451:+|nuORF ENST00000475821.1_1_1:101702507-101704451:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20477294921875 3 360.189101 1077.54547 0.34958 0.00012591 -0.27074 -9.7518E-05 0.078839 2.8397E-05 360.18894227679226 29.542 0.52572 27.649 27.402 27.928 -1.8928 43 14 4 0 0 0 0.67174 1 4993 4993 8.1555 0.54658 1 4500300 24562 10277 16111 16117 24315 24315 0.009802510922781948 KSYVHSAL 8 Unmodified _KSYVHSAL_ 0 0 0 USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;USP8|p.R76Kfs*3|1|0.54|ENSG00000138592|chr15:50441463-50441464|-/A|frameshift_variant;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;USP8|p.R138Kfs*14|1|0.27|ENSG00000138592|chr15:50459070-50459071|-/A|frameshift_variant;USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7509765625 2 452.747985 903.481417 0.28188 0.00012762 -0.10346 -4.6844E-05 0.17841 8.0775E-05 452.74785481457286 29.606 0.5544 29.606 29.329 29.884 0 38 15 4 0 0 0 0.27251 1 5282 5282 37.974 17.52 1 8465700 24563 4180;26563 16112 16118 24316 24316 0.025815157259899024 KSYVHSAL 8 Unmodified _KSYVHSAL_ 0 0 0 USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;USP8|p.R76Kfs*3|1|0.54|ENSG00000138592|chr15:50441463-50441464|-/A|frameshift_variant;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;USP8|p.R138Kfs*14|1|0.27|ENSG00000138592|chr15:50459070-50459071|-/A|frameshift_variant;USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7508850097656 2 452.747985 903.481417 0.24039 0.00010884 -0.2617 -0.00011849 -0.021312 -9.649E-06 452.7477560269454 31.492 0.77744 29.465 29.163 29.94 -2.0264 42 21 3 0 0 0 0.51112 1 5462 5462 20.454 1.0146 1 7344500 24564 4180;26563 16112 16118 24317 24317 0.025815157259899024 KSYVHSAL 8 Unmodified _KSYVHSAL_ 0 0 0 USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;USP8|p.R76Kfs*3|1|0.54|ENSG00000138592|chr15:50441463-50441464|-/A|frameshift_variant;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;USP8|p.R138Kfs*14|1|0.27|ENSG00000138592|chr15:50459070-50459071|-/A|frameshift_variant;USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7516174316406 2 452.747985 903.481417 0.43898 0.00019875 -0.51864 -0.00023482 -0.079667 -3.6069E-05 452.7476165342023 31.62 0.66875 29.472 29.231 29.9 -2.1483 48 18 4 0 0 0 0.51112 1 5435 5435 26.884 11.036 1 5366100 24565 4180;26563 16112 16118 24318 24318 0.025815157259899024 KTAASPIVL 9 Unmodified _KTAASPIVL_ 0 0 0 REV__ENSG00000099991|ENST00000263119|CABIN1 REV__ENSG00000099991|ENST00000263119|CABIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.7126159667969 2 450.28166 898.548768 0.017825 8.0264E-06 0.15329 6.9025E-05 0.17112 7.7051E-05 450.28143521326336 55.787 0.55881 52.598 52.39 52.948 -3.1895 20 15 2 0 0 0 0.6226 1 10332 10332 4.897 4.897 1 698820 + 24566 14653 16113 16119 24319 24319 0.09543545936935516 KTALHLRAR 9 Unmodified _KTALHLRAR_ 0 0 0 ENSG00000013364|ENST00000357402|MVP ENSG00000013364|ENST00000357402|MVP ENSG00000013364|ENST00000357402|MVP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27734375 2 533.335624 1064.6567 NaN NaN NaN NaN NaN NaN NaN 59.474 1 56.25 55.75 56.75 -3.2237 0 0 0 0.19628 1 11110 11110 0.12781 0 1 24567 1095 16114 16120 24320 24320 0.1269535531089332 KTCAVLQS 8 Unmodified _KTCAVLQS_ 0 0 0 REV__ENSG00000137076|ENST00000314888|TLN1 REV__ENSG00000137076|ENST00000314888|TLN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2374572753906 2 425.228571 848.442588 NaN NaN NaN NaN NaN NaN NaN 176.14 1 171.27 170.77 171.77 -4.8739 0 0 0 0.21486 1 35033 35033 2.3027 0 1 + 24568 16374 16115 16121 24321 24321 0.012304670999810696 KTCGQRMEE 9 Unmodified _KTCGQRMEE_ 0 0 0 ATP4B|p.Y241Lfs*18|1|0.07|ENSG00000186009|chr13:113649530-113649531|-/A|frameshift_variant;ENSG00000186009|ENST00000335288|ATP4B ATP4B|p.Y241Lfs*18|1|0.07|ENSG00000186009|chr13:113649530-113649531|-/A|frameshift_variant ATP4B|p.Y241Lfs*18|1|0.07|ENSG00000186009|chr13:113649530-113649531|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.05560302734375 3 361.163681 1080.46921 NaN NaN NaN NaN NaN NaN NaN 4.0717 1 4.0717 3.5717 4.5717 0 0 0 0 0.23508 1 14 14 0.96228 0 1 24569 272 16116 16122 24322 24322 -0.06780212070998459 KTCKNFQVL 9 Unmodified _KTCKNFQVL_ 0 0 0 ENST00000524031.1_1_6:109739377-109752485:-|nuORF;nc|ENSG00000185250|Q8IXY8-3|PPIL6;ENSG00000185250|ENST00000521072|PPIL6;nc|ENSG00000185250|Q8IXY8-2|PPIL6 ENST00000524031.1_1_6:109739377-109752485:-|nuORF ENST00000524031.1_1_6:109739377-109752485:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.7764892578125 3 360.867193 1079.57975 -0.27205 -9.8175E-05 0.12724 4.5916E-05 -0.14482 -5.2259E-05 360.8672276487997 54.002 0.67968 54.002 53.674 54.354 0 33 18 2 0 0 0 0.6215 1 10233 10233 0.073264 0 1 3014200 24570 6971 16117 16123 24323 24323 0.043143759795157166 KTCKNFQVL 9 Unmodified _KTCKNFQVL_ 0 0 0 ENST00000524031.1_1_6:109739377-109752485:-|nuORF;nc|ENSG00000185250|Q8IXY8-3|PPIL6;ENSG00000185250|ENST00000521072|PPIL6;nc|ENSG00000185250|Q8IXY8-2|PPIL6 ENST00000524031.1_1_6:109739377-109752485:-|nuORF ENST00000524031.1_1_6:109739377-109752485:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 360.867193 1079.57975 -0.40463 -0.00014602 0.39914 0.00014404 -0.0054921 -1.9819E-06 360.8672540542221 56.72 0.587 53.826 53.511 54.098 -2.8944 -0.053782 0.00013357 NaN 0.073264 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2490200 24571 6971 16117 16123 0.043143759795157166 KTCKNFQVL 9 Unmodified _KTCKNFQVL_ 0 0 0 ENST00000524031.1_1_6:109739377-109752485:-|nuORF;nc|ENSG00000185250|Q8IXY8-3|PPIL6;ENSG00000185250|ENST00000521072|PPIL6;nc|ENSG00000185250|Q8IXY8-2|PPIL6 ENST00000524031.1_1_6:109739377-109752485:-|nuORF ENST00000524031.1_1_6:109739377-109752485:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 360.867193 1079.57975 0.074584 2.6915E-05 -0.15158 -5.4698E-05 -0.076991 -2.7783E-05 360.86704913402724 57.009 0.73574 53.82 53.404 54.14 -3.1895 -0.05963 -0.00046263 NaN 0.073264 36 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2200600 24572 6971 16117 16123 0.043143759795157166 KTCKNFQVL 9 Unmodified _KTCKNFQVL_ 0 0 0 ENST00000524031.1_1_6:109739377-109752485:-|nuORF;nc|ENSG00000185250|Q8IXY8-3|PPIL6;ENSG00000185250|ENST00000521072|PPIL6;nc|ENSG00000185250|Q8IXY8-2|PPIL6 ENST00000524031.1_1_6:109739377-109752485:-|nuORF ENST00000524031.1_1_6:109739377-109752485:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 360.867193 1079.57975 -0.6448 -0.00023269 0.61969 0.00022363 -0.025111 -9.0618E-06 360.86738479253717 57.046 0.77233 53.87 53.51 54.282 -3.1761 -0.0095315 0.00037234 NaN 0.073264 38 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1982100 24573 6971 16117 16123 0.043143759795157166 KTCSSRPSCL 10 Unmodified _KTCSSRPSCL_ 0 0 0 ENST00000452841.1_1_13:19467552-19468185:-|nuORF ENST00000452841.1_1_13:19467552-19468185:-|nuORF ENST00000452841.1_1_13:19467552-19468185:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.1647033691406 3 361.17581 1080.5056 NaN NaN NaN NaN NaN NaN NaN 79.428 1 75.623 75.123 76.123 -3.8048 0 0 0 0.22588 1 15070 15070 1.7423 0 1 24574 9999 16118 16124 24324 24324 -0.03143335174308959 KTDDDEITWG 10 Unmodified _KTDDDEITWG_ 0 0 0 nc|ENSG00000163629|Q12923-2|PTPN13;PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13 nc|ENSG00000163629|Q12923-2|PTPN13 nc|ENSG00000163629|Q12923-2|PTPN13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.265380859375 2 590.26185 1178.50915 NaN NaN NaN NaN NaN NaN NaN 48.781 1 45.782 45.282 46.282 -2.999 0 0 0 2.8426 1 8910 8910 1.9064 1.8802 1 24575 12419 16119 16125 24325 24325 -0.072966705951103 KTDESLTKY 9 Unmodified _KTDESLTKY_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENST00000555301.1_1_14:21862382-21863168:-|nuORF;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7835083007812 2 542.779679 1083.5448 0.38557 0.00020928 -0.1779 -9.656E-05 0.20767 0.00011272 542.7795586343797 27.988 0.58367 27.988 27.631 28.215 0 47 16 4 0 0 0 0.029693 4 4924 4921;4924;4972;4976 81.915 49.334 1 11898000 24576 2020 16120 16126 24326;24327;24328;24329 24327 0.0063741165256487875 KTDESLTKY 9 Unmodified _KTDESLTKY_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENST00000555301.1_1_14:21862382-21863168:-|nuORF;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.782470703125 2 542.779679 1083.5448 0.78321 0.00042511 -0.68176 -0.00037005 0.10145 5.5063E-05 542.7792812830834 29.881 0.66359 27.764 27.421 28.084 -2.1167 54 18 4 0 0 0 0.010009 1 5396 5396 104.48 46.762 1 11177000 24577 2020 16120 16126 24330 24330 0.0063741165256487875 KTDESLTKY 9 Unmodified _KTDESLTKY_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENST00000555301.1_1_14:21862382-21863168:-|nuORF;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7825927734375 2 542.779679 1083.5448 0.36478 0.000198 -0.26555 -0.00014414 0.099228 5.3859E-05 542.7795155746007 29.759 0.73371 27.867 27.473 28.207 -1.8928 51 20 3 0 0 0 0.0021965 6 5087 5017;5034;5037;5085;5087;5100 118.21 64.805 1 12614000 24578 2020 16120 16126 24331;24332;24333;24334;24335;24336 24335 0.0063741165256487875 KTDESLTKY 9 Unmodified _KTDESLTKY_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENST00000555301.1_1_14:21862382-21863168:-|nuORF;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7828979492188 2 542.779679 1083.5448 0.62479 0.00033913 -0.40586 -0.00022029 0.21894 0.00011883 542.7793499265565 29.878 0.94599 27.803 27.448 28.394 -2.0743 58 26 3 0 0 0 0.029693 4 5100 5054;5098;5100;5149 97.138 65.409 1 9062200 24579 2020 16120 16126 24337;24338;24339;24340 24339 0.0063741165256487875 KTDMVEKALLY 11 Unmodified _KTDMVEKALLY_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2165222167969 3 437.572335 1309.69517 0.57926 0.00025347 -0.72527 -0.00031736 -0.14601 -6.3889E-05 437.57207128161843 102.18 0.62899 102.18 101.85 102.48 0 36 17 3 0 0 0 0.92595 1 20073 20073 12.929 8.8121 1 1693600 24580 6479 16121 16127 24341 24341 0.052714353199007746 KTDMVEKALLY 11 Unmodified _KTDMVEKALLY_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2152404785156 3 437.572335 1309.69517 -0.47173 -0.00020641 0.40785 0.00017847 -0.063873 -2.7949E-05 437.5724890439385 106.2 0.73175 101.94 101.59 102.32 -4.2638 47 20 3 0 0 0 0.94603 1 20856 20856 7.0341 6.5796 1 3327400 24581 6479 16121 16127 24342 24342 0.052714353199007746 KTDMVEKALLY 11 Unmodified _KTDMVEKALLY_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2175598144531 3 437.572335 1309.69517 -0.00024298 -1.0632E-07 -0.23277 -0.00010186 -0.23302 -0.00010196 437.57230302984084 106.17 1.0736 101.79 101.26 102.34 -4.3764 36 17 3 0 0 0 0.44207 1 20360 20360 30.414 21.969 1 3464500 24582 6479 16121 16127 24343 24343 0.052714353199007746 KTDPENTDY 9 Unmodified _KTDPENTDY_ 0 0 0 ENSG00000105248|ENST00000262962|YJU2 ENSG00000105248|ENST00000262962|YJU2 ENSG00000105248|ENST00000262962|YJU2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2694091796875 2 541.735468 1081.45638 0.28551 0.00015467 -0.085073 -4.6087E-05 0.20044 0.00010859 541.7353889240916 19.62 1.1148 19.62 19.344 20.459 0 90 31 5 0 0 0 1.0636E-05 1 3249 3249 136.39 58.243 1 43546000 24583 2290 16122 16128 24344 24344 -0.08108628657873851 KTDPENTDY 9 Unmodified _KTDPENTDY_ 0 0 0 ENSG00000105248|ENST00000262962|YJU2 ENSG00000105248|ENST00000262962|YJU2 ENSG00000105248|ENST00000262962|YJU2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.267333984375 2 541.735468 1081.45638 0.61849 0.00033506 -0.54419 -0.00029481 0.074298 4.025E-05 541.7351672463084 21.042 0.66571 19.568 19.35 20.016 -1.4742 57 18 5 0 0 0 0.0088712 2 3512 3509;3512 106.94 35.807 1 38507000 24584 2290 16122 16128 24345;24346 24346 -0.08108628657873851 KTDPENTDY 9 Unmodified _KTDPENTDY_ 0 0 0 ENSG00000105248|ENST00000262962|YJU2 ENSG00000105248|ENST00000262962|YJU2 ENSG00000105248|ENST00000262962|YJU2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2684326171875 2 541.735468 1081.45638 -0.16878 -9.1433E-05 0.22559 0.00012221 0.056807 3.0775E-05 541.7355594567151 20.945 0.59499 19.56 19.307 19.902 -1.3847 49 16 4 0 0 0 5.0834E-10 1 3263 3263 139.78 61.632 1 33647000 24585 2290 16122 16128 24347 24347 -0.08108628657873851 KTDPENTDY 9 Unmodified _KTDPENTDY_ 0 0 0 ENSG00000105248|ENST00000262962|YJU2 ENSG00000105248|ENST00000262962|YJU2 ENSG00000105248|ENST00000262962|YJU2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2705078125 2 541.735468 1081.45638 -0.66619 -0.0003609 0.53419 0.00028939 -0.132 -7.151E-05 541.7357377221126 21.2 0.63218 19.479 19.253 19.885 -1.7211 52 17 4 0 0 0 0.026883 1 3315 3315 86.332 31.558 1 22555000 24586 2290 16122 16128 24348 24348 -0.08108628657873851 KTDPKDPANY 10 Unmodified _KTDPKDPANY_ 0 0 0 ENSG00000187555|ENST00000344836|USP7;nc|ENSG00000187555|Q93009-3|USP7;ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENSG00000187555|ENST00000344836|USP7 ENSG00000187555|ENST00000344836|USP7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3206176757812 2 574.782753 1147.55095 -0.57536 -0.00033071 1.0071 0.00057888 0.43177 0.00024817 574.7832746278681 22.315 0.69685 20.526 20.188 20.885 -1.7886 60 19 4 0 0 0 0.57807 1 3553 3553 20.415 4.5674 1 5958200 24587 7114 16123 16129 24349 24349 -0.016920701159051532 KTDVVVNSV 9 Unmodified _KTDVVVNSV_ 0 0 0 nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14 nc|ENSG00000173193|Q460N5-5|PARP14 nc|ENSG00000173193|Q460N5-5|PARP14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2528381347656 2 480.771657 959.528761 -0.05303 -2.5495E-05 -0.10937 -5.2582E-05 -0.1624 -7.8077E-05 480.77149529942085 48.5 0.60206 45.631 45.199 45.801 -2.869 22 16 2 0 0 0 0.066912 1 9174 9174 65.474 11.641 1 1870000 24588 6272 16124 16130 24350 24350 0.04737750206345481 KTDVVVNSV 9 Unmodified _KTDVVVNSV_ 0 0 0 nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14 nc|ENSG00000173193|Q460N5-5|PARP14 nc|ENSG00000173193|Q460N5-5|PARP14 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.771657 959.528761 0.04002 1.9241E-05 -0.38995 -0.00018748 -0.34993 -0.00016824 480.77150567318967 48.657 0.56107 45.658 45.368 45.929 -2.999 -0.0079777 -0.00025465 NaN 65.474 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1312300 24589 6272 16124 16130 0.04737750206345481 KTEDYFKI 8 Unmodified _KTEDYFKI_ 0 0 0 REV__tr|U7T503|U7T503_FUSNURNApolymerasesigmafactorSigSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00623PE=3SV=1 REV__tr|U7T503|U7T503_FUSNURNApolymerasesigmafactorSigSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00623PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2723388671875 2 522.274032 1042.53351 -0.23369 -0.00012205 -2.0976 -0.0010955 -2.3313 -0.0012176 522.2728782980041 45.82 0.72786 42.979 42.619 43.347 -2.8409 34 20 2 0 0 0 8448 1 8568 8568 0.68139 0.27313 1 1425400 + 24590 25403 16125 16131 24351 24351 0.013946343490943036 KTEENSIP 8 Unmodified _KTEENSIP_ 0 0 0 nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2;TENM2|p.N1524Tfs*20|1|0.1|ENSG00000145934|chr5:168218458-168218458|A/-|frameshift_variant;TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant;TENM2|p.L1355*|1|0.14|ENSG00000145934|chr5:168215255-168215255|C/-|frameshift_variant nc|ENSG00000145934|Q9NT68-2|TENM2 nc|ENSG00000145934|Q9NT68-2|TENM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2360534667969 2 459.232364 916.450176 0.19741 9.0656E-05 0.20677 9.4956E-05 0.40418 0.00018561 459.23243536287384 61.897 1.2471 58.658 57.858 59.105 -3.2395 58 35 3 0 0 0 0.69031 1 11632 11632 15.847 0 1 3016600 24591 4630 16126 16132 24352 24352 -0.011391020987502998 KTESGREQF 9 Unmodified _KTESGREQF_ 0 0 0 REV__ENSG00000198796|ENST00000361673|ALPK2 REV__ENSG00000198796|ENST00000361673|ALPK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2666015625 2 541.26727 1080.51999 0.27215 0.00014731 -0.90288 -0.0004887 -0.63073 -0.00034139 541.2666240033168 128.06 0.60513 123.44 123.09 123.7 -4.6214 38 16 3 0 0 0 0.25976 1 25293 25293 0.87518 0.46691 1 3079900 + 24592 19451 16127 16133 24353 24353 -0.017052234301445424 KTFFSDVS 8 Unmodified _KTFFSDVS_ 0 0 0 ZNF284|p.K154T|1|0.44|ENSG00000186026|chr19:44085939-44085939|A/C|missense_variant ZNF284|p.K154T|1|0.44|ENSG00000186026|chr19:44085939-44085939|A/C|missense_variant ZNF284|p.K154T|1|0.44|ENSG00000186026|chr19:44085939-44085939|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23809814453125 2 465.732 929.449448 0.22634 0.00010542 -0.28953 -0.00013485 -0.063192 -2.943E-05 465.73176803814874 32.253 0.59353 30.226 29.833 30.427 -2.0264 36 16 3 0 0 0 0.97966 1 5610 5610 7.2892 0 1 4098700 24593 26612 16128 16134 24354 24354 -0.018098967478067607 KTFIIRRIEHR 11 Unmodified _KTFIIRRIEHR_ 0 0 0 REV__LRP1|p.D1283Ifs*50|1|0.09|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant REV__LRP1|p.D1283Ifs*50|1|0.09|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25750732421875 3 490.30016 1467.87865 NaN NaN NaN NaN NaN NaN NaN 159.86 1 155.06 154.56 155.56 -4.7952 0 0 0 0.22632 1 31785 31785 0.03141 0.03141 1 + 24594 23808 16129 16135 24355 24355 0.16342589936380136 KTFIKSSLDI 10 Unmodified _KTFIKSSLDI_ 0 0 0 nc|ENSG00000160062|Q96BR9-2|ZBTB8A;ENSG00000160062|ENST00000373510|ZBTB8A nc|ENSG00000160062|Q96BR9-2|ZBTB8A nc|ENSG00000160062|Q96BR9-2|ZBTB8A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3351440429688 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 60.522 1 57.208 56.708 57.708 -3.3139 0 0 0 0.22573 1 11273 11273 15.248 2.7169 1 24595 5227 16130 16136 24356 24356 0.09047140854363533 KTFPYQHRY 9 Unmodified _KTFPYQHRY_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2;THOC2|p.L784Ffs*4|1|0.3|ENSG00000125676|chrX:123631817-123631818|-/A|frameshift_variant;THOC2|p.M511L|1|0.51|ENSG00000125676|chrX:123644807-123644807|T/G|missense_variant ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1688232421875 4 310.662187 1238.61964 0.29067 9.0301E-05 -0.02185 -6.788E-06 0.26882 8.3513E-05 310.66223611937465 31.555 0.24948 29.529 29.409 29.658 -2.0264 11 6 3 0 0 0 0.88413 1 5472 5472 1.0715 0 1 347400 24596 3376 16131 16137 24357 24357 0.00987638974447691 KTFRFGFY 8 Unmodified _KTFRFGFY_ 0 0 0 nc|ENSG00000171817|Q8NDQ6-2|ZNF540;nc|ENSG00000171817|Q8NDQ6-4|ZNF540;ENST00000589285.1_1_19:38102250-38104161:+|nuORF;ENSG00000171817|ENST00000316433|ZNF540 nc|ENSG00000171817|Q8NDQ6-2|ZNF540 nc|ENSG00000171817|Q8NDQ6-2|ZNF540 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28173828125 2 533.279452 1064.54435 NaN NaN NaN NaN NaN NaN NaN 64.476 1 61.018 60.518 61.518 -3.4581 0 0 0 0.23025 1 12059 12059 1.7423 1.1154 1 24597 6177 16132 16138 24358 24358 0.014660815140359773 KTFRFGFY 8 Unmodified _KTFRFGFY_ 0 0 0 nc|ENSG00000171817|Q8NDQ6-2|ZNF540;nc|ENSG00000171817|Q8NDQ6-4|ZNF540;ENST00000589285.1_1_19:38102250-38104161:+|nuORF;ENSG00000171817|ENST00000316433|ZNF540 nc|ENSG00000171817|Q8NDQ6-2|ZNF540 nc|ENSG00000171817|Q8NDQ6-2|ZNF540 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2807006835938 2 533.279452 1064.54435 NaN NaN NaN NaN NaN NaN NaN 131 1 126.16 125.66 126.66 -4.8355 0 0 0 0.2343 1 25152 25152 0.68139 0.55853 1 24598 6177 16132 16138 24359 24359 0.014660815140359773 KTFTTQET 8 Unmodified _KTFTTQET_ 0 0 0 GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant;CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2454528808594 2 478.24019 954.465826 0.74927 0.00035833 -0.98535 -0.00047123 -0.23608 -0.0001129 478.23973074039884 28.678 0.65169 26.722 26.468 27.12 -1.9561 67 18 7 0 0 0 8448 1 5144 5144 3.2813 3.1584 1 5845800 + 24599 698 16133 16139 24360 24360 -0.013228155817046172 KTFVRWWQWHR 11 Unmodified _KTFVRWWQWHR_ 0 0 0 REV__nc|ENSG00000133026|P35580|MYH10 REV__nc|ENSG00000133026|P35580|MYH10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.370361328125 2 815.431119 1628.84768 NaN NaN NaN NaN NaN NaN NaN 169.71 1 164.84 164.34 165.34 -4.873 0 0 0 0.22632 1 33539 33539 0.58532 0.47428 1 + 24600 16148 16134 16140 24361 24361 0.058414366221313685 KTGFRVNRVC 10 Unmodified _KTGFRVNRVC_ 0 0 0 REV__ENSG00000167315|ENST00000285093|ACAA2 REV__ENSG00000167315|ENST00000285093|ACAA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2605590820312 2 590.324399 1178.63425 NaN NaN NaN NaN NaN NaN NaN 75.268 1 71.635 71.135 72.135 -3.6337 0 0 0 2.8426 1 14307 14307 0.51642 0 1 + 24601 17917 16135 16141 24362 24362 0.05207387850964551 KTGGKCPA 8 Unmodified _KTGGKCPA_ 0 0 0 PLEKHA6|p.R9C|1|0.08|ENSG00000143850|chr1:204273703-204273703|G/A|missense_variant PLEKHA6|p.R9C|1|0.08|ENSG00000143850|chr1:204273703-204273703|G/A|missense_variant PLEKHA6|p.R9C|1|0.08|ENSG00000143850|chr1:204273703-204273703|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2189636230469 2 381.202356 760.390159 NaN NaN NaN NaN NaN NaN NaN 17.786 1 16.272 15.772 16.772 -1.5148 0 0 0 0.2396 1 2603 2603 0.12286 0 1 24602 12800 16136 16142 24363 24363 0.00037928757001282065 KTGPRGPE 8 Unmodified _KTGPRGPE_ 0 0 0 REV__ENSG00000099381|ENST00000262519|SETD1A REV__ENSG00000099381|ENST00000262519|SETD1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.2613525390625 2 421.229959 840.445365 NaN NaN NaN NaN NaN NaN NaN 90.117 1 86.339 85.839 86.839 -3.7779 0 0 0 0.2325 1 17245 17245 0.25148 0 1 + 24603 14637 16137 16143 24364 24364 0.018760585491463644 KTHKSPLNNL 10 Unmodified _KTHKSPLNNL_ 0 0 0 L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|50|2|sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|50|2|sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|50|2|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.324462890625 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 165.01 1 160.22 159.72 160.72 -4.7898 0 0 0 2.8426 1 33014 33014 1.9064 1.8626 1 24604 12066 16138 16144 24365 24365 0.07655908145943613 KTIEDTLMTV 10 Unmodified _KTIEDTLMTV_ 0 0 0 nc|ENSG00000164144|P53367-3|ARFIP1;ARFIP1|p.K303Nfs*13|1|0.22|ENSG00000164144|chr4:152888246-152888246|A/-|frameshift_variant;nc|ENSG00000164144|P53367-2|ARFIP1;ENSG00000164144|ENST00000353617|ARFIP1 nc|ENSG00000164144|P53367-3|ARFIP1 nc|ENSG00000164144|P53367-3|ARFIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3253173828125 2 575.804839 1149.59513 0.29151 0.00016785 -1.5579 -0.00089705 -1.2664 -0.0007292 575.8039427209591 130.47 0.80862 130.47 129.99 130.8 0 31 22 2 0 0 0 0.42762 2 25799 25784;25799 17.443 2.1942 1 3235800 24605 200 16139 16145 24366;24367 24367 0.026311979860793144 KTIEDTLMTV 10 Unmodified _KTIEDTLMTV_ 0 0 0 nc|ENSG00000164144|P53367-3|ARFIP1;ARFIP1|p.K303Nfs*13|1|0.22|ENSG00000164144|chr4:152888246-152888246|A/-|frameshift_variant;nc|ENSG00000164144|P53367-2|ARFIP1;ENSG00000164144|ENST00000353617|ARFIP1 nc|ENSG00000164144|P53367-3|ARFIP1 nc|ENSG00000164144|P53367-3|ARFIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3172607421875 2 575.804839 1149.59513 0.22545 0.00012982 0.10505 6.0488E-05 0.3305 0.0001903 575.8049164790534 135.11 0.42175 130.28 130 130.42 -4.8307 18 11 2 0 0 0 1.1138 1 25961 25961 10.151 8.2442 1 2520000 24606 200 16139 16145 24368 24368 0.026311979860793144 KTIKSTRK 8 Unmodified _KTIKSTRK_ 0 0 0 ENST00000479322.1_1_1:218607587-218614701:+|nuORF;ENSG00000092969|ENST00000366930|TGFB2;nc|ENSG00000092969|P61812-2|TGFB2;TGFB2|p.N274Tfs*10|2|0.29|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant ENST00000479322.1_1_1:218607587-218614701:+|nuORF ENST00000479322.1_1_1:218607587-218614701:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2438659667969 2 481.311284 960.608014 NaN NaN NaN NaN NaN NaN NaN 55.7 1 52.51 52.01 53.01 -3.1895 0 0 0 0.23664 1 10303 10303 3.2813 0 1 24607 1844 16140 16146 24369 24369 0.12613441951145887 KTILKRLFRV 10 Unmodified _KTILKRLFRV_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24127197265625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 161.21 1 156.42 155.92 156.92 -4.7952 0 0 0 2.8426 1 32060 32060 0.043787 0 1 24608 2818 16141 16147 24370 24370 0.21390489652821998 KTINLKDY 8 Unmodified _KTINLKDY_ 0 0 0 nc|ENSG00000168843|Q8N475-3|FSTL5;nc|ENSG00000168843|Q8N475-2|FSTL5;ENSG00000168843|ENST00000306100|FSTL5 nc|ENSG00000168843|Q8N475-3|FSTL5 nc|ENSG00000168843|Q8N475-3|FSTL5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.005615234375 3 332.190442 993.549496 0.40849 0.0001357 -0.55741 -0.00018517 -0.14892 -4.9471E-05 332.19021852622075 29.04 0.60081 27.084 26.774 27.374 -1.9561 41 16 3 0 0 0 1.0248 1 5186 5186 1.4819 0 1 4134500 24609 5940 16142 16148 24371 24371 0.05246340585983944 KTITAIAGL 9 Unmodified _KTITAIAGL_ 0 0 0 ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 443.763671875 2 444.28166 886.548768 -0.08352 -3.7106E-05 -0.60244 -0.00026765 -0.68596 -0.00030476 444.2812022616367 95.251 0.83002 91.202 90.814 91.644 -4.0496 48 23 3 0 0 0 0.54851 1 18604 18604 4.7159 0 1 3119500 24610 9538 16143 16149 24372 24372 0.10095545936962935 KTKEVYELL 9 Unmodified _KTKEVYELL_ 0 0 0 ENST00000510584.1_1_4:57302478-57308067:+|nuORF;ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS ENST00000510584.1_1_4:57302478-57308067:+|nuORF ENST00000510584.1_1_4:57302478-57308067:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2191467285156 3 374.885018 1121.63323 -0.23762 -8.9079E-05 0.27999 0.00010497 0.042377 1.5887E-05 374.88502410123675 101.79 0.65944 97.768 97.349 98.009 -4.0212 33 18 2 0 0 0 0.70121 1 19504 19504 6.1918 2.0023 1 1752200 24611 3506 16144 16150 24373 24373 0.07727451963046406 KTKKASKTA 9 Unmodified _KTKKASKTA_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7781677246094 2 481.803291 961.59203 NaN NaN NaN NaN NaN NaN NaN 9.0538 1 9.0538 8.5538 9.5538 0 0 0 0 0.19635 1 1009 1009 0 0 1 + 24612 18092 16145 16151 24374 24374 0.10969735714218132 KTKKASKTA 9 Unmodified _KTKKASKTA_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7781677246094 2 481.803291 961.59203 NaN NaN NaN NaN NaN NaN NaN 9.0625 1 9.0625 8.5625 9.5625 0 0 0 0 0.23508 1 1010 1010 0 0 1 + 24613 18092 16145 16151 24375 24375 0.10969735714218132 KTKKASKTA 9 Unmodified _KTKKASKTA_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7890625 2 481.803291 961.59203 NaN NaN NaN NaN NaN NaN NaN 9.9773 1 8.8838 8.3838 9.3838 -1.0936 0 0 0 0.23508 1 1100 1100 0 0 1 + 24614 18092 16145 16151 24376 24376 0.10969735714218132 KTKKVLIIFL 10 Unmodified _KTKKVLIIFL_ 0 0 0 ENST00000527493.5_1_11:89892410-89896902:+|nuORF ENST00000527493.5_1_11:89892410-89896902:+|nuORF ENST00000527493.5_1_11:89892410-89896902:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2908325195312 2 601.915384 1201.81622 NaN NaN NaN NaN NaN NaN NaN 128.91 1 124.28 123.78 124.78 -4.6292 0 0 0 2.8426 1 25416 25416 0.13989 0 1 24615 10927 16146 16152 24377 24377 0.22338050815505994 KTKKVLIIFL 10 Unmodified _KTKKVLIIFL_ 0 0 0 ENST00000527493.5_1_11:89892410-89896902:+|nuORF ENST00000527493.5_1_11:89892410-89896902:+|nuORF ENST00000527493.5_1_11:89892410-89896902:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2839965820312 2 601.915384 1201.81622 NaN NaN NaN NaN NaN NaN NaN 97.819 1 93.585 93.085 94.085 -4.2348 0 0 0 2.8426 1 18690 18690 0.13989 0 1 24616 10927 16146 16152 24378 24378 0.22338050815505994 KTLCDRAL 8 Unmodified _KTLCDRAL_ 0 0 0 REV__ENST00000590883.1_1_19:12958136-12958997:+|nuORF REV__ENST00000590883.1_1_19:12958136-12958997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2386779785156 2 460.25512 918.495686 NaN NaN NaN NaN NaN NaN NaN 63.72 1 63.72 63.22 64.22 0 0 0 0 0.21486 1 12256 12256 9.3831 0.035688 1 + 24617 15005 16147 16153 24379 24379 0.03317844882622012 KTLEGEFSV 9 Unmodified _KTLEGEFSV_ 0 0 0 YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant;YY2|p.L224Yfs*18|1|0.41|ENSG00000230797|chrX:21857148-21857148|G/-|frameshift_variant;ENSG00000230797|ENST00000429584|YY2;ENSG00000100811|ENST00000262238|YY1 YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 506.7823181152344 2 505.263665 1008.51278 0.080892 4.0872E-05 -0.13337 -6.7389E-05 -0.052482 -2.6517E-05 505.26364973079745 99.045 1.4375 95.089 94.566 96.003 -3.9564 143 41 5 0 0 0 0.15889 1 19037 19037 60.47 57.587 1 131960000 24618 2015 16148 16154 24380 24380 0.008860439694444722 KTLEGEFSV 9 Unmodified _KTLEGEFSV_ 0 0 0 YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant;YY2|p.L224Yfs*18|1|0.41|ENSG00000230797|chrX:21857148-21857148|G/-|frameshift_variant;ENSG00000230797|ENST00000429584|YY2;ENSG00000100811|ENST00000262238|YY1 YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 505.263665 1008.51278 0.039041 1.9726E-05 0.10002 5.0536E-05 0.13906 7.0262E-05 505.2637222239526 95.362 1.1068 95.362 94.834 95.94 0 0.2061 6.7046E-05 NaN 60.47 108 31 5 NaN NaN NaN NaN 0 NaN NaN 0 112110000 24619 2015 16148 16154 0.008860439694444722 KTLEGEFSV 9 Unmodified _KTLEGEFSV_ 0 0 0 YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant;YY2|p.L224Yfs*18|1|0.41|ENSG00000230797|chrX:21857148-21857148|G/-|frameshift_variant;ENSG00000230797|ENST00000429584|YY2;ENSG00000100811|ENST00000262238|YY1 YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 505.263665 1008.51278 -0.025059 -1.2661E-05 0.08639 4.365E-05 0.061331 3.0988E-05 505.2637458567848 99.213 1.3217 95.08 94.574 95.896 -4.1326 -0.075642 5.3273E-05 NaN 60.47 113 37 4 NaN NaN NaN NaN 0 NaN NaN 0 141160000 24620 2015 16148 16154 0.008860439694444722 KTLEGEFSV 9 Unmodified _KTLEGEFSV_ 0 0 0 YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant;YY2|p.L224Yfs*18|1|0.41|ENSG00000230797|chrX:21857148-21857148|G/-|frameshift_variant;ENSG00000230797|ENST00000429584|YY2;ENSG00000100811|ENST00000262238|YY1 YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 505.263665 1008.51278 -0.066028 -3.3362E-05 0.061362 3.1004E-05 -0.0046662 -2.3577E-06 505.2637321184991 99.362 1.3378 95.092 94.61 95.948 -4.2692 -0.063263 2.7982E-05 NaN 60.47 126 38 5 NaN NaN NaN NaN 0 NaN NaN 0 135480000 24621 2015 16148 16154 0.008860439694444722 KTLERSYLL 9 Unmodified _KTLERSYLL_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.8912353515625 3 374.888763 1121.64446 0.15488 5.8063E-05 -0.27632 -0.00010359 -0.12144 -4.5526E-05 374.8886276337769 77.532 0.82784 77.532 77.048 77.876 0 77 23 4 0 0 0 0.35556 2 15130 15130;15149 13.535 8.1322 1 20807000 24622 5802 16149 16155 24381;24382 24381 0.08850274057181196 KTLERSYLL 9 Unmodified _KTLERSYLL_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2228698730469 3 374.888763 1121.64446 -0.21407 -8.0253E-05 0.043194 1.6193E-05 -0.17088 -6.406E-05 374.88877309054664 80.779 1.0485 77.222 76.708 77.757 -3.557 101 29 5 0 0 0 0.12517 4 15743 15732;15743;15802;15836 47.732 35.644 1 25746000 24623 5802 16149 16155 24383;24384;24385;24386 24384 0.08850274057181196 KTLERSYLL 9 Unmodified _KTLERSYLL_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2125549316406 3 374.888763 1121.64446 0.0026937 1.0099E-06 -0.20217 -7.579E-05 -0.19947 -7.478E-05 374.8886676564766 81.007 1.0488 77.168 76.664 77.713 -3.8392 101 29 5 0 0 0 0.10537 2 15353 15353;15413 60.47 41.856 1 16763000 24624 5802 16149 16155 24387;24388 24387 0.08850274057181196 KTLERSYLL 9 Unmodified _KTLERSYLL_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2123107910156 3 374.888763 1121.64446 -0.89024 -0.00033374 0.66921 0.00025088 -0.22102 -8.2859E-05 374.8889839845538 80.817 1.0441 77.129 76.652 77.696 -3.6879 100 29 5 0 0 0 0.15889 3 15379 15379;15397;15440 47.987 33.001 1 19390000 24625 5802 16149 16155 24389;24390;24391 24389 0.08850274057181196 KTLIIFIL 8 Unmodified _KTLIIFIL_ 0 0 0 REV__ENSG00000221996|ENST00000624801|OR52B4 REV__ENSG00000221996|ENST00000624801|OR52B4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2378234863281 2 480.828246 959.64194 -0.15603 -7.5025E-05 0.45907 0.00022074 0.30304 0.00014571 480.8284584528946 89.793 0.5931 89.793 89.39 89.983 0 19 16 2 0 0 0 0.89687 1 17557 17557 3.2813 0 1 1772500 + 24626 19713 16150 16156 24392 24392 0.16050470390189275 KTLIIFIL 8 Unmodified _KTLIIFIL_ 0 0 0 REV__ENSG00000221996|ENST00000624801|OR52B4 REV__ENSG00000221996|ENST00000624801|OR52B4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2420959472656 2 480.828246 959.64194 -0.14704 -7.0701E-05 0.36761 0.00017676 0.22057 0.00010606 480.82837287837333 112.83 0.67896 108.38 108.04 108.72 -4.4539 32 18 2 0 0 0 8448 2 22192 22192;22263 6.2058 0 1 3393900 + 24627 19713 16150 16156 24393;24394 24393 0.16050470390189275 KTLIIFIL 8 Unmodified _KTLIIFIL_ 0 0 0 REV__ENSG00000221996|ENST00000624801|OR52B4 REV__ENSG00000221996|ENST00000624801|OR52B4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24432373046875 2 480.828246 959.64194 0.05212 2.5061E-05 0.14888 7.1587E-05 0.201 9.6648E-05 480.8282743121615 112.97 0.71014 108.45 108.07 108.78 -4.5259 40 19 3 0 0 0 0.89225 1 21660 21660 6.2058 0 1 2774400 + 24628 19713 16150 16156 24395 24395 0.16050470390189275 KTLLIVGPKP 10 Unmodified _KTLLIVGPKP_ 0 0 0 REV__ENSG00000275385|ENST00000616054|CCL18 REV__ENSG00000275385|ENST00000616054|CCL18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28173828125 2 533.35516 1064.69577 NaN NaN NaN NaN NaN NaN NaN 133.24 1 128.36 127.86 128.86 -4.8726 0 0 0 2.8426 1 25596 25596 1.9064 1.2087 1 + 24629 19932 16151 16157 24396 24396 0.16600642821890688 KTLLVRPYIT 10 Unmodified _KTLLVRPYIT_ 0 0 0 RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant;ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2 RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2916870117188 2 602.376623 1202.73869 NaN NaN NaN NaN NaN NaN NaN 42.947 1 40.341 39.841 40.841 -2.606 0 0 0 2.8426 1 7737 7737 0.13989 0 1 24630 3752 16152 16158 24397 24397 0.1454341287931129 KTMGKKIK 8 Unmodified _KTMGKKIK_ 0 0 0 ENST00000475168.1_1_1:231696972-231699214:+|nuORF ENST00000475168.1_1_1:231696972-231699214:+|nuORF ENST00000475168.1_1_1:231696972-231699214:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.8688049316406 3 311.868646 932.584108 NaN NaN NaN NaN NaN NaN NaN 178.84 1 173.93 173.43 174.43 -4.9088 0 0 0 0.21486 1 35680 35680 0 0 1 24631 10273 16153 16159 24398 24398 0.11511885193090166 KTMPLVVK 8 Unmodified _KTMPLVVK_ 0 0 0 REV__ENSG00000137040|ENST00000259569|RANBP6 REV__ENSG00000137040|ENST00000259569|RANBP6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.232666015625 2 458.288431 914.562309 0.10657 4.8838E-05 0.29936 0.00013719 0.40592 0.00018603 458.2884831075552 90.203 0.59357 90.203 89.913 90.507 0 22 16 2 0 0 0 0.88974 1 17631 17631 0.68139 0 1 1593500 + 24632 16371 16154 16160 24399 24399 0.10161080444527215 KTPFRHRQRRS 11 Unmodified _KTPFRHRQRRS_ 0 0 0 REV__ENSG00000135392|ENST00000678005|DNAJC14 REV__ENSG00000135392|ENST00000678005|DNAJC14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26324462890625 3 490.283392 1467.82835 NaN NaN NaN NaN NaN NaN NaN 160.39 1 155.6 155.1 156.1 -4.7952 0 0 0 0.22632 1 31897 31897 0.50596 0 1 + 24633 16265 16155 16161 24400 24400 0.1131448033122524 KTPYRFLRV 9 Unmodified _KTPYRFLRV_ 0 0 0 REV__EML5|p.K1218R|1|0.25|ENSG00000165521|chr14:88661676-88661676|T/C|missense_variant REV__EML5|p.K1218R|1|0.25|ENSG00000165521|chr14:88661676-88661676|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2568969726562 2 590.353483 1178.69241 NaN NaN NaN NaN NaN NaN NaN 118.36 1 118.36 117.86 118.86 0 0 0 0 0.23508 1 23312 23312 4.897 0.56777 1 + 24634 13811 16156 16162 24401 24401 0.11021392767884208 KTPYVVVAFQ 10 Unmodified _KTPYVVVAFQ_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3198852539062 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 146.13 1 146.13 145.63 146.63 0 0 0 0 0.22588 1 29213 29213 7.609 0.88579 1 24635 7127 16157 16163 24402 24402 0.06935175545504535 KTQRIASH 8 Unmodified _KTQRIASH_ 0 0 0 nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1 nc|ENSG00000175792|Q9Y265-2|RUVBL1 nc|ENSG00000175792|Q9Y265-2|RUVBL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.1815185546875 3 314.182281 939.525013 NaN NaN NaN NaN NaN NaN NaN 28.159 1 26.203 25.703 26.703 -1.9561 0 0 0 0.21486 1 5028 5028 3.5965 0 1 24636 6434 16158 16164 24403 24403 0.05283125223127172 KTRFKAIT 8 Unmodified _KTRFKAIT_ 0 0 0 REV__ENST00000507090.2_1_4:13338255-13338456:+|nuORF REV__ENST00000507090.2_1_4:13338255-13338456:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.2009582519531 3 322.202793 963.58655 NaN NaN NaN NaN NaN NaN NaN 91.283 1 91.283 90.783 91.783 0 0 0 0 0.21486 1 17836 17836 0.40072 0.050084 1 + 24637 22498 16159 16165 24404 24404 0.10330056922407493 KTRFWKNV 8 Unmodified _KTRFWKNV_ 0 0 0 ENSG00000115594|ENST00000410023|IL1R1 ENSG00000115594|ENST00000410023|IL1R1 ENSG00000115594|ENST00000410023|IL1R1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2101745605469 3 360.210059 1077.60835 NaN NaN NaN NaN NaN NaN NaN 159.61 1 154.34 153.84 154.84 -5.2712 0 0 0 0.2396 1 30971 30971 0.12286 0 1 24638 2870 16160 16166 24405 24405 0.07264861670978462 KTRKRRRRKRR 11 Unmodified _KTRKRRRRKRR_ 0 0 0 ENST00000361675.6_2_7:134618055-134618145:+|nuORF ENST00000361675.6_2_7:134618055-134618145:+|nuORF ENST00000361675.6_2_7:134618055-134618145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2684936523438 3 533.024246 1596.05091 NaN NaN NaN NaN NaN NaN NaN 46.118 1 43.252 42.752 43.752 -2.8653 0 0 0 0.23698 1 8376 8376 0.073264 0.073264 1 24639 9031 16161 16167 24406 24406 0.27672599187121705 KTRLSYWAV 9 Unmodified _KTRLSYWAV_ 0 0 0 REV__nc|ENSG00000143061|O75054-2|IGSF3 REV__nc|ENSG00000143061|O75054-2|IGSF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.214599609375 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 175.78 1 170.9 170.4 171.4 -4.8739 0 0 0 0.19624 1 34957 34957 0.073264 0 1 + 24640 16698 16162 16168 24407 24407 0.062174246055292315 KTSDKPLMY 9 Unmodified _KTSDKPLMY_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.265869140625 2 541.781167 1081.54778 0.018542 1.0046E-05 0.3067 0.00016616 0.32524 0.00017621 541.7812122354532 44.763 0.7421 41.996 41.629 42.371 -2.7661 34 20 2 0 0 0 0.37645 1 8131 8131 45.74 16.658 1 3148400 24641 5137 16163 16169 24408 24408 0.010269635057284177 KTSDKPLMY 9 Unmodified _KTSDKPLMY_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2646484375 2 541.781167 1081.54778 -0.013094 -7.094E-06 0.18881 0.00010229 0.17571 9.5198E-05 541.781257443143 44.715 0.80785 41.967 41.638 42.446 -2.7475 51 22 3 0 0 0 0.66788 1 8040 8040 17.113 0 1 2253200 24642 5137 16163 16169 24409 24409 0.010269635057284177 KTSDKPLMY 9 Unmodified _KTSDKPLMY_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.781167 1081.54778 0.20057 0.00010867 -0.11784 -6.3844E-05 0.082732 4.4822E-05 541.7810632874863 44.892 0.64143 42.102 41.778 42.42 -2.79 0.080143 -0.00022743 NaN 53.404 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4328100 24643 5137 16163 16169 0.010269635057284177 KTSKGSSK 8 Unmodified _KTSKGSSK_ 0 0 0 ENSG00000176887|ENST00000322002|SOX11 ENSG00000176887|ENST00000322002|SOX11 ENSG00000176887|ENST00000322002|SOX11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.736328125 2 411.737617 821.460681 NaN NaN NaN NaN NaN NaN NaN 44.093 1 41.303 40.803 41.803 -2.79 0 0 0 0.22847 1 8277 8277 10.074 3.8681 1 24644 6485 16164 16170 24410 24410 0.04280925346336062 KTSPDNLGP 9 Unmodified _KTSPDNLGP_ 0 0 0 REV__ENST00000428432.6_1_3:169656361-169656481:+|nuORF REV__ENST00000428432.6_1_3:169656361-169656481:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1624450683594 3 310.162663 927.46616 NaN NaN NaN NaN NaN NaN NaN 110.64 1 106.41 105.91 106.91 -4.2289 0 0 0 0.19651 1 21292 21292 1.2148 0 1 + 24645 21590 16165 16171 24411 24411 -0.0004739586187270106 KTSQILIF 8 Unmodified _KTSQILIF_ 0 0 0 REV__MTERF1|p.N329Ifs*9|1|0.03|ENSG00000127989|chr7:91873808-91873809|-/GGAGTAAAAAAAGA|frameshift_variant REV__MTERF1|p.N329Ifs*9|1|0.03|ENSG00000127989|chr7:91873808-91873809|-/GGAGTAAAAAAAGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.2154541015625 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 79.015 1 75.211 74.711 75.711 -3.8048 0 0 0 0.21486 1 14989 14989 1.4819 0 1 + 24646 15909 16166 16172 24412 24412 0.08807832454010622 KTSRVLQN 8 Unmodified _KTSRVLQN_ 0 0 0 nc|ENSG00000140379|Q16548-2|BCL2A1;BCL2A1|p.L158Qfs*15|1|0.04|ENSG00000140379|chr15:79961122-79961123|-/CTTTTAAATAAACAACTTT|frameshift_variant;ENSG00000140379|ENST00000267953|BCL2A1 nc|ENSG00000140379|Q16548-2|BCL2A1 nc|ENSG00000140379|Q16548-2|BCL2A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 473.2781677246094 2 473.277441 944.540328 NaN NaN NaN NaN NaN NaN NaN 138.18 1 138.18 137.68 138.68 0 0 0 0 0.21486 1 27428 27428 5.2307 0 1 24647 308 16167 16173 24413 24413 0.06583992020330243 KTSTAIKKA 9 Unmodified _KTSTAIKKA_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 474.2958984375 2 474.297842 946.581131 NaN NaN NaN NaN NaN NaN NaN 163.53 1 163.53 163.03 164.03 0 0 0 0 0.19711 1 32970 32970 0.87518 0 1 24648 5434 16168 16174 24414 24414 0.10570333339944682 KTTKVKNGS 9 Unmodified _KTTKVKNGS_ 0 0 0 REV__ENSG00000163377|ENST00000295569|TAFA4 REV__ENSG00000163377|ENST00000295569|TAFA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78302001953125 2 481.785099 961.555644 NaN NaN NaN NaN NaN NaN NaN 83.338 1 79.639 79.139 80.139 -3.6985 0 0 0 0.19698 1 15909 15909 7.4771 7.3493 1 + 24649 17565 16169 16175 24415 24415 0.07332858817528631 KTTQQRESGYY 11 Unmodified _KTTQQRESGYY_ 0 0 0 NUAK1|p.K470T|1|0.31|ENSG00000074590|chr12:106067379-106067379|T/G|missense_variant NUAK1|p.K470T|1|0.31|ENSG00000074590|chr12:106067379-106067379|T/G|missense_variant NUAK1|p.K470T|1|0.31|ENSG00000074590|chr12:106067379-106067379|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7477722167969 3 454.221241 1359.64189 -0.66588 -0.00030246 0.76565 0.00034777 0.099769 4.5317E-05 454.22152861669304 22.031 0.2691 20.31 20.156 20.425 -1.7211 19 7 3 0 0 0 0.96173 1 3484 3484 2.2527 0.51045 1 866280 24650 12715 16170 16176 24416 24416 -0.023542261383909135 KTTSKGGA 8 Unmodified _KTTSKGGA_ 0 0 0 REV__ENST00000450873.6_2_7:66236917-66240338:+|nuORF REV__ENST00000450873.6_2_7:66236917-66240338:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2115173339844 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 16.253 1 16.253 15.753 16.753 0 0 0 0 0.2396 1 2521 2521 0.30703 0 1 + 24651 21800 16171 16177 24417 24417 0.023649672835290403 KTTTIAVEV 9 Unmodified _KTTTIAVEV_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7835388183594 2 481.281857 960.549162 0.2506 0.00012061 -0.090495 -4.3554E-05 0.16011 7.7056E-05 481.28172547753746 76.643 0.91794 76.643 76.063 76.981 0 58 25 3 0 0 0 0.058839 4 14895 14855;14895;14936;14939 54.068 27.073 1 6366300 24652 2877 16172 16178 24418;24419;24420;24421 24419 0.06730920866141332 KTTTIAVEV 9 Unmodified _KTTTIAVEV_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7829895019531 2 481.281857 960.549162 0.07517 3.6178E-05 -0.1762 -8.48E-05 -0.10103 -4.8622E-05 481.2816538249409 79.598 0.81738 76.088 75.659 76.476 -3.5102 58 22 3 0 0 0 0.25976 1 15585 15585 17.113 16.806 1 5568500 24653 2877 16172 16178 24422 24422 0.06730920866141332 KTTTIAVEV 9 Unmodified _KTTTIAVEV_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7831115722656 2 481.281857 960.549162 -0.023724 -1.1418E-05 -0.24255 -0.00011674 -0.26627 -0.00012815 481.28166765028675 79.91 0.92024 76.105 75.646 76.566 -3.8048 59 25 3 0 0 0 0.15889 1 15148 15148 22.736 22.357 1 5163900 24654 2877 16172 16178 24423 24423 0.06730920866141332 KTTTIAVEV 9 Unmodified _KTTTIAVEV_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.783203125 2 481.281857 960.549162 -0.19101 -9.1932E-05 -0.02042 -9.8278E-06 -0.21144 -0.00010176 481.2817725501397 79.831 0.94025 76.155 75.69 76.63 -3.676 59 26 3 0 0 0 0.25976 1 15217 15217 17.113 16.238 1 5761200 24655 2877 16172 16178 24424 24424 0.06730920866141332 KTVKQPHVQ 9 Unmodified _KTVKQPHVQ_ 0 0 0 REV__nc|ENSG00000142515|P07288-3|KLK3 REV__nc|ENSG00000142515|P07288-3|KLK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2735595703125 2 532.81419 1063.61383 0.58432 0.00031134 0.27801 0.00014813 0.86233 0.00045946 532.8140188942866 74.18 1.1383 70.504 70.07 71.208 -3.6764 44 32 2 0 0 0 0.55728 1 14073 14073 0.40827 0 1 2711100 + 24656 16674 16173 16179 24425 24425 0.08456540462793782 KTVSKKIKY 9 Unmodified _KTVSKKIKY_ 0 0 0 REV__ENSG00000099399|ENST00000378988|MAGEB2 REV__ENSG00000099399|ENST00000378988|MAGEB2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7835693359375 2 547.850242 1093.68593 NaN NaN NaN NaN NaN NaN NaN 74.7 1 71.024 70.524 71.524 -3.6764 0 0 0 0.19624 1 14122 14122 0.073264 0 1 24657 14639 16174 16180 24426 24426 0.14283454816495578 KTVWYSVP 8 Unmodified _KTVWYSVP_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2685852050781 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 121.16 1 121.16 120.66 121.66 0 0 0 0 0.20896 1 23881 23881 18.135 2.2878 1 24658 2164 16175 16181 24427 24427 0.027349729028514957 KTWFSLLSL 9 Unmodified _KTWFSLLSL_ 0 0 0 REV__ENSG00000111913|ENST00000643898|RIPOR2 REV__ENSG00000111913|ENST00000643898|RIPOR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7935180664062 2 547.815867 1093.61718 NaN NaN NaN NaN NaN NaN NaN 119.11 1 114.7 114.2 115.2 -4.4088 0 0 0 0.23508 1 22924 22924 11.64 0 1 + 24659 15271 16176 16182 24428 24428 0.07411790516812289 KTYISPWER 9 Unmodified _KTYISPWER_ 0 0 0 ENSG00000177791|ENST00000359322|MYOZ1 ENSG00000177791|ENST00000359322|MYOZ1 ENSG00000177791|ENST00000359322|MYOZ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 393.290283203125 3 393.876746 1178.60841 0.15364 6.0517E-05 -3.2668 -0.0012867 -3.1131 -0.0012262 393.87599338941516 26.659 0.49284 25.024 24.789 25.282 -1.6347 19 13 2 0 0 0 0.87797 1 4474 4474 1.9064 0 1 1243100 24660 6538 16177 16183 24429 24429 0.026248168803249428 KVAALNIQV 9 Unmodified _KVAALNIQV_ 0 0 0 SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant;ENSG00000198887|ENST00000361138|SMC5 SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7348937988281 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 114.1 1 109.55 109.05 110.05 -4.555 0 0 0 0.19512 1 21905 21905 12.241 2.6967 1 24661 7514 16178 16184 24430 24430 0.10710637202566886 KVADGFKVV 9 Unmodified _KVADGFKVV_ 0 0 0 GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7870788574219 2 481.78711 961.559667 -0.31963 -0.00015399 0.51797 0.00024955 0.19834 9.5558E-05 481.78734156506437 66.549 0.66254 66.549 66.205 66.868 0 28 18 2 0 0 0 0.0088712 3 12863 12812;12851;12863 106.94 37.835 1 3272100 24662 11855 16179 16185 24431;24432;24433 24433 0.07734948311224343 KVADGFKVV 9 Unmodified _KVADGFKVV_ 0 0 0 GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78717041015625 2 481.78711 961.559667 -0.041914 -2.0193E-05 -0.14205 -6.8439E-05 -0.18397 -8.8632E-05 481.7872207222302 69.407 0.67528 66.227 65.974 66.649 -3.1796 28 18 2 0 0 0 0.11282 2 13484 13484;13527 51.415 16.326 1 3963800 24663 11855 16179 16185 24434;24435 24434 0.07734948311224343 KVADGFKVV 9 Unmodified _KVADGFKVV_ 0 0 0 GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7786865234375 2 481.78711 961.559667 0.41005 0.00019756 -0.16692 -8.0418E-05 0.24314 0.00011714 481.78704547553104 69.834 0.5843 66.254 65.933 66.517 -3.5798 36 16 3 0 0 0 0.05838 3 13160 13116;13160;13167 67.838 27.888 1 2804300 24664 11855 16179 16185 24436;24437;24438 24437 0.07734948311224343 KVADGFKVV 9 Unmodified _KVADGFKVV_ 0 0 0 GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7873840332031 2 481.78711 961.559667 0.26181 0.00012614 -0.58593 -0.00028229 -0.32412 -0.00015616 481.78698097311343 69.703 0.62917 66.312 65.947 66.576 -3.3903 30 17 2 0 0 0 0.10699 2 13149 13149;13198 53.404 22.767 1 2981800 24665 11855 16179 16185 24439;24440 24439 0.07734948311224343 KVADGLVKV 9 Unmodified _KVADGLVKV_ 0 0 0 nc|ENSG00000137100|O75935-3|DCTN3;nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3 nc|ENSG00000137100|O75935-3|DCTN3 nc|ENSG00000137100|O75935-3|DCTN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2572021484375 2 464.794935 927.575317 -0.16812 -7.8141E-05 -0.12561 -5.8385E-05 -0.29373 -0.00013653 464.7948643921812 60.121 0.41889 60.121 59.895 60.314 0 18 11 2 0 0 0 0.6202 1 11529 11529 27.223 1.8239 1 1344500 24666 4066 16180 16186 24441 24441 0.10863234828275381 KVADGLVKV 9 Unmodified _KVADGLVKV_ 0 0 0 nc|ENSG00000137100|O75935-3|DCTN3;nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3 nc|ENSG00000137100|O75935-3|DCTN3 nc|ENSG00000137100|O75935-3|DCTN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2479248046875 2 464.794935 927.575317 0.23943 0.00011129 -0.68923 -0.00032035 -0.4498 -0.00020906 464.7946195009681 62.929 0.40892 59.672 59.506 59.915 -3.2567 15 11 2 0 0 0 0.58395 1 11806 11806 28.495 3.5035 1 966280 24667 4066 16180 16186 24442 24442 0.10863234828275381 KVAHGADQC 9 Unmodified _KVAHGADQC_ 0 0 0 REV__ZAN|p.C2312Lfs*43|1|0.24|ENSG00000146839|chr7:100786096-100786097|-/TG|frameshift_variant REV__ZAN|p.C2312Lfs*43|1|0.24|ENSG00000146839|chr7:100786096-100786097|-/TG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648864746094 3 310.14836 927.42325 0.29438 9.1301E-05 0.62985 0.00019535 0.92423 0.00028665 310.1484806840251 72.184 0.42979 68.557 68.301 68.731 -3.6275 16 11 2 0 0 0 0.68435 1 13641 13641 4.5289 2.4429 1 595900 + 24668 16904 16181 16187 24443 24443 -0.04336489190939119 KVAHGADQC 9 Unmodified _KVAHGADQC_ 0 0 0 REV__ZAN|p.C2312Lfs*43|1|0.24|ENSG00000146839|chr7:100786096-100786097|-/TG|frameshift_variant REV__ZAN|p.C2312Lfs*43|1|0.24|ENSG00000146839|chr7:100786096-100786097|-/TG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 310.14836 927.42325 -0.81586 -0.00025304 1.8241 0.00056575 1.0083 0.00031271 310.1488194747575 68.501 0.46436 68.501 68.254 68.718 0 -0.010074 0.00041247 NaN 4.5289 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 722250 + 24669 16904 16181 16187 -0.04336489190939119 KVAIKIVNREK 11 Unmodified _KVAIKIVNREK_ 0 0 0 BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2;nc|ENSG00000160469|Q8TDC3-3|BRSK1;BRSK2|p.R355Gfs*4|2|0.39|ENSG00000174672|chr11:1445650-1445650|C/-|frameshift_variant;ENSG00000160469|ENST00000309383|BRSK1;nc|ENSG00000160469|Q8TDC3-2|BRSK1;BRSK1|p.G116Vfs*8|1|0.14|ENSG00000160469|chr19:55289504-55289504|G/-|frameshift_variant BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 433.1686706542969 3 433.281995 1296.82415 NaN NaN NaN NaN NaN NaN NaN 75.878 1 72.245 71.745 72.745 -3.6337 0 0 0 0.22632 1 14432 14432 0.58532 0.079364 1 24670 337 16182 16188 24444 24444 0.18761578064959394 KVATGDAI 8 Unmodified _KVATGDAI_ 0 0 0 REV__tr|U7T5R0|U7T5R0_FUSNUthreonineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00142PE=4SV=1 REV__tr|U7T5R0|U7T5R0_FUSNUthreonineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00142PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.719482421875 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 23.972 1 22.418 21.918 22.918 -1.5532 0 0 0 0.23025 1 4158 4158 1.7423 0 1 + 24671 25419 16183 16189 24445 24445 0.03254137943326896 KVCCRDLSG 9 Unmodified _KVCCRDLSG_ 0 0 0 ENSG00000151694|ENST00000310823|ADAM17;nc|ENSG00000151694|P78536-2|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2595520019531 2 490.736237 979.457921 0.42932 0.00021068 0.57394 0.00028165 1.0033 0.00049234 490.7364816878867 88.024 0.49174 84.028 83.799 84.291 -3.9953 20 13 2 0 0 0 0.61212 1 16796 16796 0.87518 0.66785 1 1401500 24672 4883 16184 16190 24446 24446 -0.0326298937447973 KVCCRDLSG 9 Unmodified _KVCCRDLSG_ 0 0 0 ENSG00000151694|ENST00000310823|ADAM17;nc|ENSG00000151694|P78536-2|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 490.736237 979.457921 0.032061 1.5734E-05 1.2706 0.00062354 1.3027 0.00063927 490.7368629977287 87.708 0.72421 83.915 83.577 84.301 -3.7926 -0.095498 0.00017955 NaN 0.87518 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1395300 24673 4883 16184 16190 -0.0326298937447973 KVCQLTDEQ 9 Unmodified _KVCQLTDEQ_ 0 0 0 ENSG00000109674|ENST00000264596|NEIL3 ENSG00000109674|ENST00000264596|NEIL3 ENSG00000109674|ENST00000264596|NEIL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2865600585938 2 532.258056 1062.50156 0.20885 0.00011116 -0.58092 -0.0003092 -0.37207 -0.00019804 532.257794703883 38.938 1.3695 36.533 35.913 37.282 -2.4049 87 38 3 0 0 0 0.64382 1 6964 6964 10.074 10.074 1 4468200 24674 2536 16185 16191 24447 24447 -0.027191013963602018 KVDENQKAYY 10 Unmodified _KVDENQKAYY_ 0 0 0 nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1 nc|ENSG00000103222|P33527-8|ABCC1 nc|ENSG00000103222|P33527-8|ABCC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 420.31903076171875 3 419.875182 1256.60372 0.17709 7.4356E-05 0.016962 7.1218E-06 0.19405 8.1478E-05 420.2095812972985 27.33 0.35044 25.574 25.406 25.757 -1.7552 20 9 3 0 0 0 0.91149 1 4547 4547 0.56317 0 1 2836200 24675 2175 16186 16192 24448 24448 -0.014321120530894405 KVDGFHHLI 9 Unmodified _KVDGFHHLI_ 0 0 0 HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|190|1|anti-sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|190|1|anti-sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|190|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2713012695312 2 533.295633 1064.57671 NaN NaN NaN NaN NaN NaN NaN 143.38 1 138.48 137.98 138.98 -4.8982 0 0 0 0.19512 1 27674 27674 12.241 4.0851 1 24676 11880 16187 16193 24449 24449 0.04700868917052503 KVDPDSTWF 9 Unmodified _KVDPDSTWF_ 0 0 0 ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7841186523438 2 547.761289 1093.50803 0.33491 0.00018345 -0.14103 -7.7253E-05 0.19388 0.0001062 548.2638744797762 154.01 0.21263 154.01 153.87 154.08 0 8 5 3 0 0 0 0.64382 1 30871 30871 10.074 0 1 1450200 24677 2064 16188 16194 24450 24450 -0.03498840173347162 KVEKAVIAA 9 Unmodified _KVEKAVIAA_ 0 0 0 tr|U7SPU3|U7SPU3_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01900PE=4SV=1 tr|U7SPU3|U7SPU3_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01900PE=4SV=1 tr|U7SPU3|U7SPU3_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01900PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2417297363281 2 464.794935 927.575317 0.0092172 4.2841E-06 -0.47152 -0.00021916 -0.4623 -0.00021488 464.7946986250126 62.587 0.38062 59.626 59.464 59.844 -2.9614 16 10 2 0 0 0 0.81359 1 12109 12109 11.495 1.3441 1 665100 24678 26049 16189 16195 24451 24451 0.10863234828264012 KVEKAVIAA 9 Unmodified _KVEKAVIAA_ 0 0 0 tr|U7SPU3|U7SPU3_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01900PE=4SV=1 tr|U7SPU3|U7SPU3_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01900PE=4SV=1 tr|U7SPU3|U7SPU3_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01900PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24749755859375 2 464.794935 927.575317 0.117 5.438E-05 -0.091864 -4.2698E-05 0.025134 1.1682E-05 464.7948806865439 63.105 0.40013 59.689 59.468 59.868 -3.4158 14 10 2 0 0 0 0.55539 1 11763 11763 16.149 0.41048 1 766090 24679 26049 16189 16195 24452 24452 0.10863234828264012 KVESLQEE 8 Unmodified _KVESLQEE_ 0 0 0 ENST00000421459.2_2_10:17272631-17276850:+|nuORF;ENSG00000026025|ENST00000544301|VIM ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENST00000421459.2_2_10:17272631-17276850:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2449645996094 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 23.617 1 22.064 21.564 22.564 -1.5532 0 0 0 0.23312 1 4084 4084 6.2058 0 1 24680 1143 16190 16196 24453 24453 -0.005428329272717747 KVFCGHEH 8 Unmodified _KVFCGHEH_ 0 0 0 nc|ENSG00000103253|Q6PII5|HAGHL;ENSG00000103253|ENST00000389703|HAGHL;ENST00000567696.1_1_16:778685-779089:+|nuORF nc|ENSG00000103253|Q6PII5|HAGHL nc|ENSG00000103253|Q6PII5|HAGHL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.735107421875 2 478.723987 955.433421 NaN NaN NaN NaN NaN NaN NaN 71.355 1 71.355 70.855 71.855 0 0 0 0 0.22684 1 13824 13824 1.7423 0 1 24681 2177 16191 16197 24454 24454 -0.04607881465699393 KVFERCELA 9 Unmodified _KVFERCELA_ 0 0 0 ENSG00000090382|ENST00000261267|LYZ ENSG00000090382|ENST00000261267|LYZ ENSG00000090382|ENST00000261267|LYZ MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7874145507812 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 153.91 1 149.14 148.64 149.64 -4.7684 0 0 0 0.23508 1 30586 30586 9.3831 0 1 24682 1783 16192 16198 24455 24455 0.015977855998698942 KVFGTDSSLQ 10 Unmodified _KVFGTDSSLQ_ 0 0 0 SALL4|p.N742*|1|0.36|ENSG00000101115|chr20:51790263-51790264|-/G|frameshift_variant;ENSG00000101115|ENST00000217086|SALL4 SALL4|p.N742*|1|0.36|ENSG00000101115|chr20:51790263-51790264|-/G|frameshift_variant SALL4|p.N742*|1|0.36|ENSG00000101115|chr20:51790263-51790264|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.281005859375 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 35.42 1 35.42 34.92 35.92 0 0 0 0 0.22557 1 6502 6502 17.443 1.5955 1 24683 2037 16193 16199 24456 24456 0.008088313724329055 KVFLESFSS 9 Unmodified _KVFLESFSS_ 0 0 0 REV__nc|ENSG00000100815|Q15643-2|TRIP11 REV__nc|ENSG00000100815|Q15643-2|TRIP11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2755126953125 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 169.13 1 169.13 168.63 169.63 0 0 0 0 0.23508 1 34704 34704 13.042 1.4022 1 + 24684 14743 16194 16200 24457 24457 0.013946343490943036 KVFSNGADLSG 11 Unmodified _KVFSNGADLSG_ 0 0 0 ENST00000489769.1_1_14:94844788-94846995:-|nuORF;nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1 ENST00000489769.1_1_14:94844788-94846995:-|nuORF ENST00000489769.1_1_14:94844788-94846995:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7777709960938 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 150.44 1 145.32 144.82 145.82 -5.1204 0 0 0 0.23018 1 29155 29155 8.1555 0.24537 1 24685 7345 16195 16201 24458 24458 -0.0026405277033063612 KVGERWYK 8 Unmodified _KVGERWYK_ 0 0 0 nc|ENSG00000146839|Q9Y493-7|ZAN;ZAN|p.I1593Sfs*12|1|0.22|ENSG00000146839|chr7:100767168-100767168|G/-|frameshift_variant;ZAN|p.C2312Lfs*43|1|0.24|ENSG00000146839|chr7:100786096-100786097|-/TG|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;ZAN|p.G2740Efs*38|1|0.09|ENSG00000146839|chr7:100795285-100795285|G/-|frameshift_variant;ZAN|p.E2695Rfs*83|1|0.15|ENSG00000146839|chr7:100794212-100794212|G/-|frameshift_variant;ENSG00000146839|ENST00000613979|ZAN nc|ENSG00000146839|Q9Y493-7|ZAN nc|ENSG00000146839|Q9Y493-7|ZAN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2816772460938 2 533.295633 1064.57671 0.47419 0.00025289 -0.67726 -0.00036118 -0.20307 -0.00010829 533.2955200064133 143.65 0.35435 138.63 138.35 138.7 -5.0261 13 9 2 0 0 0 0.69713 1 27681 27681 14.838 0.25658 1 1332500 24686 12371 16196 16202 24459 24459 0.04700868917029766 KVGKFVPKI 9 Unmodified _KVGKFVPKI_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.8959655761719 3 339.226939 1014.65899 -0.55766 -0.00018917 0.42699 0.00014485 -0.13068 -4.433E-05 339.2270523824785 59.67 0.77246 56.446 56.012 56.784 -3.2237 50 21 3 0 0 0 0.039965 1 11149 11149 52.268 29.532 1 3580200 24687 6702 16197 16203 24460 24460 0.1522439099597932 KVGKFVPKI 9 Unmodified _KVGKFVPKI_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 339.226939 1014.65899 -0.58459 -0.00019831 0.56932 0.00019313 -0.015269 -5.1797E-06 339.22709632326996 56.844 0.62903 56.844 56.499 57.128 0 0.27903 0.00032367 NaN 52.268 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2781400 24688 6702 16197 16203 0.1522439099597932 KVGKFVPKI 9 Unmodified _KVGKFVPKI_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 339.226939 1014.65899 0.088614 3.006E-05 -0.12625 -4.2826E-05 -0.037633 -1.2766E-05 339.2268579879236 59.789 0.83935 56.475 56.031 56.87 -3.3139 -0.089603 -0.0003842 NaN 52.268 47 23 3 NaN NaN NaN NaN 0 NaN NaN 0 2287800 24689 6702 16197 16203 0.1522439099597932 KVHFRILAL 9 Unmodified _KVHFRILAL_ 0 0 0 REV__FAM120A|p.V551Sfs*6|1|0.21|ENSG00000048828|chr9:93529491-93529491|C/-|frameshift_variant REV__FAM120A|p.V551Sfs*6|1|0.21|ENSG00000048828|chr9:93529491-93529491|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 366.22637939453125 3 366.237838 1095.69168 -0.43535 -0.00015944 -1.5642 -0.00057287 -1.9995 -0.00073231 366.23840384768096 57.197 0.179 57.197 57.128 57.307 0 6 4 2 0 0 0 0.55219 1 10942 10942 0.87518 0.74736 1 341300 + 24690 14077 16198 16204 24461 24461 0.14766598118831098 KVHHVLLHI 9 Unmodified _KVHHVLLHI_ 0 0 0 nc|ENSG00000184988|Q96A25-2|TMEM106A;ENSG00000184988|ENST00000612339|TMEM106A nc|ENSG00000184988|Q96A25-2|TMEM106A nc|ENSG00000184988|Q96A25-2|TMEM106A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.9306945800781 3 365.897704 1094.67128 NaN NaN NaN NaN NaN NaN NaN 12.142 1 12.142 11.642 12.642 0 0 0 0 0.23508 1 1669 1669 2.7352 0 1 24691 6950 16199 16205 24462 24462 0.12773427459046616 KVHLYKCA 8 Unmodified _KVHLYKCA_ 0 0 0 ENSG00000076356|ENST00000367033|PLXNA2 ENSG00000076356|ENST00000367033|PLXNA2 ENSG00000076356|ENST00000367033|PLXNA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.21710205078125 3 321.181112 960.521507 NaN NaN NaN NaN NaN NaN NaN 82.37 1 78.671 78.171 79.171 -3.6985 0 0 0 0.21486 1 15708 15708 1.6526 0 1 24692 1538 16200 16206 24463 24463 0.03966739124916785 KVHSKRYAY 9 Unmodified _KVHSKRYAY_ 0 0 0 FLI1|p.G353S|1|0.18|ENSG00000151702|chr11:128810686-128810686|G/A|missense_variant FLI1|p.G353S|1|0.18|ENSG00000151702|chr11:128810686-128810686|G/A|missense_variant FLI1|p.G353S|1|0.18|ENSG00000151702|chr11:128810686-128810686|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3208618164062 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 84.074 1 80.363 79.863 80.863 -3.7117 0 0 0 0.19674 1 16057 16057 2.6312 1.7863 1 24693 11819 16201 16207 24464 24464 0.055439428370846144 KVIILFLLLLL 11 Unmodified _KVIILFLLLLL_ 0 0 0 REV__tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1 REV__tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 649.4656982421875 2 649.46471 1296.91487 NaN NaN NaN NaN NaN NaN NaN 176.94 1 172.15 171.65 172.65 -4.7898 0 0 0 0.22632 1 36187 36187 0 0 1 + 24694 25058 16202 16208 24465 24465 0.27828654060567715 KVIIPCAY 8 Unmodified _KVIIPCAY_ 0 0 0 ENST00000552237.1_1_12:95918380-95918500:-|nuORF ENST00000552237.1_1_12:95918380-95918500:-|nuORF ENST00000552237.1_1_12:95918380-95918500:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7591857910156 2 453.759507 905.50446 NaN NaN NaN NaN NaN NaN NaN 88.422 1 84.672 84.172 85.172 -3.7501 0 0 0 0.23294 1 16924 16924 1.7423 0 1 24695 11192 16203 16209 24466 24466 0.04792818519104003 KVILKKKKKKK 11 Unmodified _KVILKKKKKKK_ 0 0 0 nc|ENSG00000198929|O75052-3|NOS1AP nc|ENSG00000198929|O75052-3|NOS1AP nc|ENSG00000198929|O75052-3|NOS1AP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 685.1942749023438 2 685.010682 1368.00681 NaN NaN NaN NaN NaN NaN NaN 167.8 1 162.91 162.41 163.41 -4.8916 0 0 0 0.23698 1 33042 33042 0.26902 0.26902 1 24696 12555 16204 16210 24467 24467 0.33752757197567007 KVITDIAGV 9 Unmodified _KVITDIAGV_ 0 0 0 nc|ENSG00000163918|P35249-2|RFC4;ENST00000494047.5_1_3:186509405-186522502:-|nuORF;ENSG00000163918|ENST00000296273|RFC4;ENST00000479307.5_1_3:186508099-186512490:-|nuORF nc|ENSG00000163918|P35249-2|RFC4 nc|ENSG00000163918|P35249-2|RFC4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2403564453125 2 458.279118 914.543683 NaN NaN NaN NaN NaN NaN NaN 94.071 1 90.227 89.727 90.727 -3.844 0 0 0 0.13259 1 18042 18042 32.786 7.3864 1 24697 5481 16205 16211 24468 24468 0.08299242074326685 KVIYSSLTG 9 Unmodified _KVIYSSLTG_ 0 0 0 REV__ENSG00000082068|ENST00000265107|WDR70 REV__ENSG00000082068|ENST00000265107|WDR70 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.18597412109375 3 323.186809 966.538597 NaN NaN NaN NaN NaN NaN NaN 91.68 1 91.68 91.18 92.18 0 0 0 0 0.23508 1 17923 17923 0.96228 0.56156 1 + 24698 14435 16206 16212 24469 24469 0.053989382117038076 KVKAPEHLL 9 Unmodified _KVKAPEHLL_ 0 0 0 REV__TNIK|p.P773L|1|0.3|ENSG00000154310|chr3:171108129-171108129|G/A|missense_variant REV__TNIK|p.P773L|1|0.3|ENSG00000154310|chr3:171108129-171108129|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 517.8742065429688 2 517.821484 1033.62842 NaN NaN NaN NaN NaN NaN NaN 170.28 1 165.49 164.99 165.99 -4.7898 0 0 0 0.19649 1 34549 34549 0.37959 0 1 + 24699 24828 16207 16213 24470 24470 0.1129461261095912 KVKCKRHRP 9 Unmodified _KVKCKRHRP_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;ENST00000508980.5_1_6:86270935-86284080:-|nuORF;SNX14|p.F173Lfs*5|3|0.42|ENSG00000135317|chr6:85565362-85565362|A/-|frameshift_variant nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.314453125 2 576.350751 1150.68695 NaN NaN NaN NaN NaN NaN NaN 164.21 1 159.17 158.67 159.67 -5.0446 0 0 0 0.23508 1 32011 32011 10.824 2.0785 1 24700 3916 16208 16214 24471 24471 0.11763390704413723 KVKDEIKIFRR 11 Unmodified _KVKDEIKIFRR_ 0 0 0 tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1 tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1 tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 477.9661865234375 3 477.964666 1430.87217 NaN NaN NaN NaN NaN NaN NaN 147.53 1 142.37 141.87 142.87 -5.1557 0 0 0 0.22632 1 28549 28549 0.65807 0 1 24701 26322 16209 16215 24472 24472 0.17396651984995515 KVKEFFEKL 9 Unmodified _KVKEFFEKL_ 0 0 0 nc|ENSG00000204977|O60858-3|TRIM13;ENSG00000204977|ENST00000378182|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 389.8348083496094 3 389.897258 1166.66995 -0.27336 -0.00010658 0.35922 0.00014006 0.085864 3.3478E-05 389.8973036845271 86.874 0.70234 83.147 82.872 83.574 -3.727 42 19 3 0 0 0 0.06955 1 16967 16967 67.838 42.847 1 3456800 24702 7625 16210 16216 24473 24473 0.09327748579607942 KVKEFFEKL 9 Unmodified _KVKEFFEKL_ 0 0 0 nc|ENSG00000204977|O60858-3|TRIM13;ENSG00000204977|ENST00000378182|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 389.897258 1166.66995 0.28812 0.00011234 -0.30414 -0.00011859 -0.016022 -6.2469E-06 389.8970892815908 86.996 0.6685 83.046 82.754 83.423 -3.9503 -0.051637 -0.00055644 NaN 59.368 40 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2460700 24703 7625 16210 16216 0.09327748579607942 KVKEFFEKL 9 Unmodified _KVKEFFEKL_ 0 0 0 nc|ENSG00000204977|O60858-3|TRIM13;ENSG00000204977|ENST00000378182|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 389.897258 1166.66995 -0.51497 -0.00020079 0.46756 0.0001823 -0.047412 -1.8486E-05 389.89742088341507 86.828 0.59832 83.099 82.8 83.398 -3.7289 0.0015516 0.00034621 NaN 59.368 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2868700 24704 7625 16210 16216 0.09327748579607942 KVKHYYRFWIL 11 Unmodified _KVKHYYRFWIL_ 0 0 0 nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-3|PCNX1 nc|ENSG00000100731|Q96RV3-3|PCNX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 518.2984008789062 3 518.297756 1551.87144 NaN NaN NaN NaN NaN NaN NaN 166.68 1 161.72 161.22 162.22 -4.964 0 0 0 0.22632 1 32705 32705 0.03141 0 1 24705 2010 16211 16217 24474 24474 0.11757857335987865 KVKIIPPQ 8 Unmodified _KVKIIPPQ_ 0 0 0 PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant;ENSG00000204569|ENST00000376511|PPP1R10 PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.2379455566406 3 308.207656 921.601138 NaN NaN NaN NaN NaN NaN NaN 106.69 1 102.42 101.92 102.92 -4.2638 0 0 0 0.21486 1 21003 21003 0.40072 0 1 24706 7589 16212 16218 24475 24475 0.13720129070554776 KVKKYMKVQ 9 Unmodified _KVKKYMKVQ_ 0 0 0 tr|U7SLA2|U7SLA2_FUSNULLPSF_NHT_00031familyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01947PE=3SV=1 tr|U7SLA2|U7SLA2_FUSNULLPSF_NHT_00031familyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01947PE=3SV=1 tr|U7SLA2|U7SLA2_FUSNULLPSF_NHT_00031familyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01947PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33251953125 2 576.352094 1150.68964 NaN NaN NaN NaN NaN NaN NaN 165.7 1 160.71 160.21 161.21 -4.9811 0 0 0 0.19679 1 32405 32405 0.87518 0.49559 1 24707 25982 16213 16219 24476 24476 0.12031801318721591 KVKRKKNVLR 10 Unmodified _KVKRKKNVLR_ 0 0 0 ENSG00000185686|ENST00000405655|PRAME ENSG00000185686|ENST00000405655|PRAME ENSG00000185686|ENST00000405655|PRAME MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 634.6607666015625 2 634.935506 1267.85646 0.42908 0.00027244 -4.0342 -0.0025615 -3.6051 -0.002289 635.4345259603398 165.74 0.1769 160.76 160.63 160.81 -4.9811 6 4 2 0 0 0 1.1309 1 32416 32416 0.20733 0 1 7131200 24708 7008 16214 16220 24477 24477 0.23324410258624084 KVKRRVRIP 9 Unmodified _KVKRRVRIP_ 0 0 0 nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2 nc|ENSG00000184792|Q969R2-5|OSBP2 nc|ENSG00000184792|Q969R2-5|OSBP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3244018554688 2 576.396016 1150.77748 NaN NaN NaN NaN NaN NaN NaN 149.01 1 144.31 143.81 144.81 -4.7095 0 0 0 0.19626 1 29592 29592 0.029283 0.029283 1 24709 6936 16215 16221 24478 24478 0.20812183024349906 KVKTTVPHR 9 Unmodified _KVKTTVPHR_ 0 0 0 ENST00000563131.2_1_15:89744727-89744991:-|nuORF ENST00000563131.2_1_15:89744727-89744991:-|nuORF ENST00000563131.2_1_15:89744727-89744991:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2698364257812 2 533.330008 1064.64546 NaN NaN NaN NaN NaN NaN NaN 147.95 1 143.24 142.74 143.74 -4.7095 0 0 0 0.19626 1 29372 29372 0.12781 0 1 24710 11327 16216 16222 24479 24479 0.11572533216735792 KVLAAVYKA 9 Unmodified _KVLAAVYKA_ 0 0 0 ENSG00000136872|ENST00000647789|ALDOB;nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA ENSG00000136872|ENST00000647789|ALDOB ENSG00000136872|ENST00000647789|ALDOB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2362976074219 2 481.805303 961.596052 -0.024296 -1.1706E-05 0.58158 0.00028021 0.55728 0.0002685 481.80547183431065 47.881 0.35621 45.012 44.842 45.199 -2.869 19 9 3 0 0 0 0.47592 1 9034 9034 12.241 7.3436 1 1404200 24711 4046 16217 16223 24480 24480 0.11371825207925212 KVLAAVYKA 9 Unmodified _KVLAAVYKA_ 0 0 0 ENSG00000136872|ENST00000647789|ALDOB;nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA ENSG00000136872|ENST00000647789|ALDOB ENSG00000136872|ENST00000647789|ALDOB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2392578125 2 481.805303 961.596052 0.046268 2.2292E-05 0.37569 0.00018101 0.42195 0.0002033 481.80549478477406 47.991 0.4634 45.049 44.788 45.252 -2.9421 24 12 3 0 0 0 0.56623 1 8769 8769 27.629 15.989 1 1793200 24712 4046 16217 16223 24481 24481 0.11371825207925212 KVLAAVYKA 9 Unmodified _KVLAAVYKA_ 0 0 0 ENSG00000136872|ENST00000647789|ALDOB;nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA ENSG00000136872|ENST00000647789|ALDOB ENSG00000136872|ENST00000647789|ALDOB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.765869140625 2 481.805303 961.596052 -0.16439 -7.9203E-05 0.30148 0.00014525 0.13709 6.6052E-05 481.80548818607366 47.958 0.48608 45.009 44.809 45.295 -2.9499 22 13 2 0 0 0 0.053942 2 8777 8777;8789 69.105 42.221 1 1694700 24713 4046 16217 16223 24482;24483 24482 0.11371825207925212 KVLAAVYKA 9 Unmodified _KVLAAVYKA_ 0 0 0 ENSG00000136872|ENST00000647789|ALDOB;nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA ENSG00000136872|ENST00000647789|ALDOB ENSG00000136872|ENST00000647789|ALDOB MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 481.805303 961.596052 0.31259 0.00015061 0.054104 2.6068E-05 0.36669 0.00017667 481.8051949505252 45.143 0.42328 45.143 44.955 45.378 0 0.089882 -0.00029048 NaN 69.105 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1864200 24714 4046 16217 16223 0.11371825207925212 KVLAKIPRR 9 Unmodified _KVLAKIPRR_ 0 0 0 ENST00000339310.7_1_10:103343400-103347291:-|nuORF;ENSG00000166169|ENST00000370162|POLL ENST00000339310.7_1_10:103343400-103347291:-|nuORF ENST00000339310.7_1_10:103343400-103347291:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2780151367188 2 540.871843 1079.72913 0.29175 0.0001578 -1.0392 -0.0005621 -0.74749 -0.0004043 540.8693095263168 124.26 0.17581 124.26 124.16 124.34 0 7 4 2 0 0 0 0.65319 1 24511 24511 0.073264 0.073264 1 1463000 24715 5697 16218 16224 24484 24484 0.19245689384456455 KVLCRGTVIY 10 Unmodified _KVLCRGTVIY_ 0 0 0 REV__ENSG00000185972|ENST00000335119|CCIN REV__ENSG00000185972|ENST00000335119|CCIN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.334228515625 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 74.225 1 70.548 70.048 71.048 -3.6764 0 0 0 0.22588 1 14033 14033 6.2058 0 1 + 24716 19002 16219 16225 24485 24485 0.08394924422009353 KVLDHRKLA 9 Unmodified _KVLDHRKLA_ 0 0 0 REV__AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant REV__AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201904296875 3 360.560981 1078.66111 NaN NaN NaN NaN NaN NaN NaN 154.22 1 149.45 148.95 149.95 -4.7684 0 0 0 0.23508 1 30651 30651 7.609 0.97858 1 + 24717 13091 16220 16226 24486 24486 0.12492819733802207 KVLDILQHI 9 Unmodified _KVLDILQHI_ 0 0 0 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2166748046875 3 360.225486 1077.65463 NaN NaN NaN NaN NaN NaN NaN 154.8 1 149.55 149.05 150.05 -5.2526 0 0 0 0.20681 1 30017 30017 21.59 8.7175 1 24718 3901 16221 16227 24487 24487 0.11890881782437646 KVLDVSDLESV 11 Unmodified _KVLDVSDLESV_ 0 0 0 SSH3|p.H335Tfs*25|1|0.12|ENSG00000172830|chr11:67308287-67308287|C/-|frameshift_variant;nc|ENSG00000172830|Q8TE77-2|SSH3;SSH3|p.E492*|1|0.12|ENSG00000172830|chr11:67310124-67310125|-/C|frameshift_variant;nc|ENSG00000172830|Q8TE77-3|SSH3;ENSG00000172830|ENST00000308127|SSH3 SSH3|p.H335Tfs*25|1|0.12|ENSG00000172830|chr11:67308287-67308287|C/-|frameshift_variant SSH3|p.H335Tfs*25|1|0.12|ENSG00000172830|chr11:67308287-67308287|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.290283203125 2 602.326993 1202.63943 0.26638 0.00016045 -0.01573 -9.4745E-06 0.25065 0.00015097 602.326934966694 131.58 0.40349 126.79 126.57 126.98 -4.799 22 10 3 0 0 0 0.52715 1 25317 25317 21.799 0.052817 1 2158600 24719 6245 16222 16228 24488 24488 0.04621925403876048 KVLEFLAKV 9 Unmodified _KVLEFLAKV_ 0 0 0 ENSG00000099399|ENST00000378988|MAGEB2;ENSG00000120289|ENST00000378982|MAGEB4;ENSG00000177689|ENST00000356790|MAGEB10 ENSG00000099399|ENST00000378988|MAGEB2 ENSG00000099399|ENST00000378988|MAGEB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6910400390625 2 523.83406 1045.65357 0.18215 9.5414E-05 -0.46252 -0.00024229 -0.28038 -0.00014687 523.8337243903666 128.71 0.49182 128.71 128.39 128.88 0 17 13 2 0 0 0 0.72134 1 25408 25408 16.566 6.4153 1 1962100 24720 1894 16223 16229 24489 24489 0.1325666741349778 KVLGENYTLED 11 Unmodified _KVLGENYTLED_ 0 0 0 nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42937766-42940268:-|nuORF;ENST00000590367.5_1_17:42931463-42950195:-|nuORF nc|ENSG00000108883|Q15029-2|EFTUD2 nc|ENSG00000108883|Q15029-2|EFTUD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.9241638183594 4 320.914676 1279.6296 -2.2941 -0.00073621 -0.98118 -0.00031487 -3.2753 -0.0010511 321.16619944784554 10.826 0.66978 9.7597 9.3879 10.058 -1.0664 26 18 2 0 0 0 0.82662 1 1232 1232 0.094841 0 1 102840 24721 2502 16224 16230 24490 24490 0.0009673739853042207 KVLGKIEKV 9 Unmodified _KVLGKIEKV_ 0 0 0 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 338.892578125 3 338.562099 1012.66447 -0.22871 -7.7433E-05 0.045387 1.5366E-05 -0.18332 -6.2067E-05 338.56205882027274 32.303 0.69157 30.155 29.864 30.556 -2.1483 62 19 4 0 0 0 0.25976 1 5648 5648 17.113 8.9574 1 18234000 24722 12082 16225 16231 24491 24491 0.15864069787789958 KVLGKIEKV 9 Unmodified _KVLGKIEKV_ 0 0 0 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 338.562099 1012.66447 -0.35525 -0.00012027 0.31431 0.00010641 -0.040941 -1.3861E-05 338.56216447455523 30.232 0.70723 30.232 29.919 30.626 0 0.050319 0.00037511 NaN 17.113 54 19 4 NaN NaN NaN NaN 0 NaN NaN 0 29424000 24723 12082 16225 16231 0.15864069787789958 KVLGKIEKV 9 Unmodified _KVLGKIEKV_ 0 0 0 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 338.562099 1012.66447 -0.10949 -3.7071E-05 -0.089296 -3.0232E-05 -0.19879 -6.7303E-05 338.56202918603594 32.401 0.53352 30.171 29.866 30.399 -2.2305 -0.011304 -3.4824E-05 NaN 17.113 48 14 4 NaN NaN NaN NaN 0 NaN NaN 0 17433000 24724 12082 16225 16231 0.15864069787789958 KVLGKIEKV 9 Unmodified _KVLGKIEKV_ 0 0 0 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 338.562099 1012.66447 0.26896 9.106E-05 -0.5011 -0.00016965 -0.23213 -7.8592E-05 338.56189333301 32.197 0.70307 30.17 29.833 30.536 -2.0264 -0.011988 -0.00045308 NaN 17.113 63 19 5 NaN NaN NaN NaN 0 NaN NaN 0 17713000 24725 12082 16225 16231 0.15864069787789958 KVLILILGLL 10 Unmodified _KVLILILGLL_ 0 0 0 tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7828979492188 2 547.899203 1093.78385 -0.0014 -7.6707E-07 -3.0163 -0.0016526 -3.0177 -0.0016534 548.3983854298618 44.904 0.10711 42.138 42.048 42.155 -2.7661 4 2 2 0 0 0 0.76698 1 8145 8145 0.40072 0 1 957240 24726 25932 16226 16232 24492 24492 0.240712634124975 KVLILVLKR 9 Unmodified _KVLILVLKR_ 0 0 0 nc|ENSG00000205946|Q6QN14|USP17L6P;ENSG00000250844|ENST00000504209|USP17L18;ENSG00000223443|ENST00000333796|USP17L2;ENSG00000250745|ENST00000506151|USP17L20;ENSG00000249811|ENST00000506414|USP17L21;ENSG00000249104|ENST00000511568|USP17L17;ENSG00000248933|ENST00000511280|USP17L22;ENSG00000248920|ENST00000515566|USP17L19;ENSG00000237038|ENST00000527080|USP17L8;ENSG00000236125|ENST00000526929|USP17L4;ENSG00000235780|ENST00000515574|USP17L27;ENSG00000233136|ENST00000457736|USP17L11;ENSG00000232399|ENST00000429667|USP17L13;ENSG00000232264|ENST00000504481|USP17L24;ENSG00000231637|ENST00000511681|USP17L29;ENSG00000231396|ENST00000417945|USP17L10;ENSG00000231051|ENST00000504543|USP17L28;ENSG00000230549|ENST00000529559|USP17L1;ENSG00000230430|ENST00000509271|USP17L25;ENSG00000229579|ENST00000509660|USP17L26;ENSG00000228856|ENST00000504104|USP17L30;ENSG00000227551|ENST00000415041|USP17L12;ENSG00000227140|ENST00000507227|USP17L5;ENSG00000226430|ENST00000530447|USP17L7;ENSG00000225327|ENST00000530484|USP17L3;ENSG00000223569|ENST00000456464|USP17L15 nc|ENSG00000205946|Q6QN14|USP17L6P nc|ENSG00000205946|Q6QN14|USP17L6P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2742919921875 2 541.394619 1080.77469 0.29252 0.00015837 -4.1435 -0.0022432 -3.8509 -0.0020849 541.8939878810087 146.01 0.20645 141.33 141.26 141.47 -4.6868 6 5 2 0 0 0 0.88312 1 28940 28940 1.8442 0.19162 1 1653900 24727 7773 16227 16233 24493 24493 0.23752914846841122 KVLLKTKV 8 Unmodified _KVLLKTKV_ 0 0 0 RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2223815917969 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 137.9 1 133.26 132.76 133.76 -4.6413 0 0 0 0.21486 1 27220 27220 1.4819 0 1 24728 25621 16228 16234 24494 24494 0.18136988621688488 KVLNELYSV 9 Unmodified _KVLNELYSV_ 0 0 0 nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;SRGAP2|p.P339Lfs*2|1|0.24|ENSG00000266028|chr1:206401603-206401603|C/-|frameshift_variant;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant nc|ENSG00000196369|P0DMP2|SRGAP2B;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27197265625 2 532.802957 1063.59136 0.42336 0.00022557 -0.022189 -1.1822E-05 0.40118 0.00021375 532.8027716861097 104.09 0.93951 104.09 103.54 104.48 0 28 23 2 0 0 0 0.60663 1 20455 20455 26.268 0 1 2997500 24729 7981;7261 16229 16235 24495 24495 0.062108962745242025 KVLNELYSV 9 Unmodified _KVLNELYSV_ 0 0 0 nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;SRGAP2|p.P339Lfs*2|1|0.24|ENSG00000266028|chr1:206401603-206401603|C/-|frameshift_variant;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant nc|ENSG00000196369|P0DMP2|SRGAP2B;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2846069335938 2 532.802957 1063.59136 -0.43564 -0.00023211 0.99764 0.00053155 0.562 0.00029944 532.803318607095 108.19 0.83466 103.87 103.34 104.18 -4.32 40 23 2 0 0 0 0.50308 1 21293 21293 31.268 11.906 1 2485000 24730 7981;7261 16229 16235 24496 24496 0.062108962745242025 KVLRKDKRIRV 11 Unmodified _KVLRKDKRIRV_ 0 0 0 SESN3|p.Q273Kfs*14|1|0.37|ENSG00000149212|chr11:95184541-95184541|A/-|frameshift_variant;nc|ENSG00000149212|P58005-3|SESN3;ENSG00000149212|ENST00000536441|SESN3 SESN3|p.Q273Kfs*14|1|0.37|ENSG00000149212|chr11:95184541-95184541|A/-|frameshift_variant;ENSG00000149212|ENST00000536441|SESN3 SESN3|p.Q273Kfs*14|1|0.37|ENSG00000149212|chr11:95184541-95184541|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 471.20623779296875 3 470.984172 1409.93069 NaN NaN NaN NaN NaN NaN NaN 130.59 1 130.59 130.09 131.09 0 0 0 0 0.22632 1 25814 25814 1.4551 0 1 24731 25655;4775 16230 16236 24497 24497 0.24211753350141407 KVMGNWEG 8 Unmodified _KVMGNWEG_ 0 0 0 REV__GRIK1|p.W655Lfs*33|1|0.12|ENSG00000171189|chr21:29577129-29577130|CC/-|frameshift_variant REV__GRIK1|p.W655Lfs*33|1|0.12|ENSG00000171189|chr21:29577129-29577130|CC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2492980957031 2 460.71837 919.422187 0.00295 1.3591E-06 -0.78616 -0.0003622 -0.78321 -0.00036084 460.7196844711703 52.833 0.17793 49.745 49.654 49.832 -3.0876 7 4 2 0 0 0 0.97966 1 9731 9731 7.2892 0 1 478190 + 24732 18208 16231 16237 24498 24498 -0.04074703559842874 KVMLQFFFWTH 11 Unmodified _KVMLQFFFWTH_ 0 0 0 REV__DOCK6|p.A931T|1|0.64|ENSG00000130158|chr19:11228963-11228963|C/T|missense_variant REV__DOCK6|p.A931T|1|0.64|ENSG00000130158|chr19:11228963-11228963|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3826293945312 2 742.381383 1482.74821 NaN NaN NaN NaN NaN NaN NaN 148.76 1 148.76 148.26 149.26 0 0 0 0 0.23379 1 29774 29774 5.2969 1.1074 1 + 24733 13738 16232 16238 24499 24499 0.026148578931952215 KVNANYVTA 9 Unmodified _KVNANYVTA_ 0 0 0 REV__tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1 REV__tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2642517089844 2 490.263999 978.513445 -0.088082 -4.3183E-05 0.55726 0.00027321 0.46918 0.00023002 490.2642857689884 87.659 0.49738 83.909 83.692 84.189 -3.7501 16 13 2 0 0 0 0.35556 1 16794 16794 14.957 11.37 1 859470 + 24734 24913 16233 16239 24500 24500 0.023328834091216777 KVPAGHGARS 10 Unmodified _KVPAGHGARS_ 0 0 0 ENST00000554737.2_1_14:73524881-73525067:-|nuORF ENST00000554737.2_1_14:73524881-73525067:-|nuORF ENST00000554737.2_1_14:73524881-73525067:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27655029296875 2 490.275232 978.535912 NaN NaN NaN NaN NaN NaN NaN 119.26 1 114.76 114.26 115.26 -4.502 0 0 0 0.22566 1 23518 23518 16.149 0.38088 1 24735 11225 16234 16240 24501 24501 0.04578527597413995 KVPAGHGARS 10 Unmodified _KVPAGHGARS_ 0 0 0 ENST00000554737.2_1_14:73524881-73525067:-|nuORF ENST00000554737.2_1_14:73524881-73525067:-|nuORF ENST00000554737.2_1_14:73524881-73525067:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27655029296875 2 490.275232 978.535912 NaN NaN NaN NaN NaN NaN NaN 119.33 1 114.86 114.36 115.36 -4.467 0 0 0 0.22566 1 22969 22969 16.149 2.6412 1 24736 11225 16234 16240 24502 24502 0.04578527597413995 KVPFIKGMSY 10 Unmodified _KVPFIKGMSY_ 0 0 0 REV__tr|U7SLU6|U7SLU6_FUSNUSimplesugartransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01897PE=4SV=1 REV__tr|U7SLU6|U7SLU6_FUSNUSimplesugartransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01897PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 585.4677124023438 2 585.323002 1168.63145 NaN NaN NaN NaN NaN NaN NaN 164.29 1 159.5 159 160 -4.7898 0 0 0 0.22588 1 32823 32823 8.7454 0 1 + 24737 24951 16235 16241 24503 24503 0.05388119673466463 KVPGPSAEAQP 11 Unmodified _KVPGPSAEAQP_ 0 0 0 REV__nc|ENSG00000048162|Q9Y3C1-3|NOP16 REV__nc|ENSG00000048162|Q9Y3C1-3|NOP16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2804565429688 2 540.787838 1079.56112 0.29901 0.0001617 2.4456 0.0013226 2.7446 0.0014843 540.7912037718139 154.29 0.17429 154.29 154.15 154.32 0 6 4 2 0 0 0 0.93546 1 30903 30903 8.1555 1.4324 1 998490 + 24738 23936 16236 16242 24504 24504 0.024525376093151863 KVPKLLIY 8 Unmodified _KVPKLLIY_ 0 0 0 ENST00000453184.2_1_2:90007722-90008108:+|nuORF;nc|ENSG00000250036|P0DSN7|IGKV1D-37;nc|ENSG00000244575|A0A075B6S5|IGKV1-27 ENST00000453184.2_1_2:90007722-90008108:+|nuORF ENST00000453184.2_1_2:90007722-90008108:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.219970703125 3 325.219673 972.637189 NaN NaN NaN NaN NaN NaN NaN 138.76 1 138.76 138.26 139.26 0 0 0 0 0.21486 1 27563 27563 0.40072 0 1 24739 10004 16237 16243 24505 24505 0.14977586247425734 KVPKLLIY 8 Unmodified _KVPKLLIY_ 0 0 0 ENST00000453184.2_1_2:90007722-90008108:+|nuORF;nc|ENSG00000250036|P0DSN7|IGKV1D-37;nc|ENSG00000244575|A0A075B6S5|IGKV1-27 ENST00000453184.2_1_2:90007722-90008108:+|nuORF ENST00000453184.2_1_2:90007722-90008108:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.22027587890625 3 325.219673 972.637189 NaN NaN NaN NaN NaN NaN NaN 136.87 1 132.23 131.73 132.73 -4.6404 0 0 0 0.21486 1 27007 27007 0.45834 0 1 24740 10004 16237 16243 24506 24506 0.14977586247425734 KVPLEEMK 8 Unmodified _KVPLEEMK_ 0 0 0 REV__tr|U7SF42|U7SF42_FUSNUSmallribosomalsubunitproteinuS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsBPE=3SV=1 REV__tr|U7SF42|U7SF42_FUSNUSmallribosomalsubunitproteinuS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 325.176513671875 3 325.184411 972.531403 NaN NaN NaN NaN NaN NaN NaN 90.537 1 86.759 86.259 87.259 -3.7779 0 0 0 0.21486 1 17327 17327 1.3295 0.25807 1 + 24741 24849 16238 16244 24507 24507 0.0440388233964768 KVPLLEPVSL 10 Unmodified _KVPLLEPVSL_ 0 0 0 REV__ENST00000600988.1_1_19:36250047-36250251:+|nuORF REV__ENST00000600988.1_1_19:36250047-36250251:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7933959960938 2 547.844625 1093.6747 NaN NaN NaN NaN NaN NaN NaN 136.92 1 132.28 131.78 132.78 -4.6413 0 0 0 0.22588 1 27016 27016 6.2058 0.47393 1 + 24742 23414 16239 16245 24508 24508 0.13160632722383525 KVPRDWRE 8 Unmodified _KVPRDWRE_ 0 0 0 nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.90447998046875 3 362.533202 1084.57778 -0.33709 -0.00012221 -0.033619 -1.2188E-05 -0.37071 -0.0001344 362.5332377146657 14.789 0.24692 14.789 14.667 14.914 0 10 6 2 0 0 0 1.0277 1 2200 2200 0 0 1 930910 24743 2714 16240 16246 24509 24509 0.03887083285940207 KVPRDWRE 8 Unmodified _KVPRDWRE_ 0 0 0 nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 362.533202 1084.57778 -0.75753 -0.00027463 0.34267 0.00012423 -0.41486 -0.0001504 362.53337365525346 15.852 0.2482 14.636 14.479 14.727 -1.2159 -0.072287 0.00018074 NaN 0 14 6 3 NaN NaN NaN NaN 0 NaN NaN 0 530150 24744 2714 16240 16246 0.03887083285940207 KVPRDWRE 8 Unmodified _KVPRDWRE_ 0 0 0 nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 362.533202 1084.57778 -0.5405 -0.00019595 0.18855 6.8355E-05 -0.35196 -0.0001276 362.53327257069174 15.922 0.24609 14.7 14.537 14.783 -1.2219 -0.0086021 1.3119E-05 NaN 0 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 333880 24745 2714 16240 16246 0.03887083285940207 KVPSIKLVY 9 Unmodified _KVPSIKLVY_ 0 0 0 ENSG00000134853|ENST00000257290|PDGFRA;ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA;PDGFRA|p.N780Tfs*17|1|0.45|ENSG00000134853|chr4:54285382-54285382|A/-|frameshift_variant ENSG00000134853|ENST00000257290|PDGFRA ENSG00000134853|ENST00000257290|PDGFRA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6956787109375 2 523.83406 1045.65357 NaN NaN NaN NaN NaN NaN NaN 132.56 1 127.92 127.42 128.42 -4.6399 0 0 0 0.23508 1 26131 26131 10.074 2.465 1 24746 3877 16241 16247 24510 24510 0.1325666741349778 KVQFHHLFSIW 11 Unmodified _KVQFHHLFSIW_ 0 0 0 AGMO|p.G305Vfs*31|1|0.2|ENSG00000187546|chr7:15387449-15387449|C/-|frameshift_variant;ENSG00000187546|ENST00000342526|AGMO AGMO|p.G305Vfs*31|1|0.2|ENSG00000187546|chr7:15387449-15387449|C/-|frameshift_variant AGMO|p.G305Vfs*31|1|0.2|ENSG00000187546|chr7:15387449-15387449|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.236328125 3 481.262823 1440.76664 NaN NaN NaN NaN NaN NaN NaN 62.428 1 59.058 58.558 59.558 -3.3694 0 0 0 0.22632 1 11652 11652 0.65807 0.072754 1 24747 96 16242 16248 24511 24511 0.06388735859400185 KVRCEFVV 8 Unmodified _KVRCEFVV_ 0 0 0 REV__nc|ENSG00000138347|Q86TC9-2|MYPN REV__nc|ENSG00000138347|Q86TC9-2|MYPN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2730407714844 2 490.273312 978.532072 NaN NaN NaN NaN NaN NaN NaN 174.17 1 174.17 173.67 174.67 0 0 0 0 0.21486 1 36044 36044 8.5933 2.8329 1 + 24748 24060 16243 16249 24512 24512 0.04194721779356314 KVRHFNFLVMC 11 Unmodified _KVRHFNFLVMC_ 0 0 0 REV__ENST00000462119.5_1_6:111621047-111621194:-|nuORF REV__ENST00000462119.5_1_6:111621047-111621194:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2499084472656 3 465.245899 1392.71587 NaN NaN NaN NaN NaN NaN NaN 66.428 1 63.101 62.601 63.601 -3.3268 0 0 0 0.22632 1 12505 12505 0.11104 0.067254 1 + 24749 21899 16244 16250 24513 24513 0.035217472185422594 KVRRWENYYLG 11 Unmodified _KVRRWENYYLG_ 0 0 0 ENSG00000222018|ENST00000410005|C21orf140 ENSG00000222018|ENST00000410005|C21orf140 ENSG00000222018|ENST00000410005|C21orf140 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3916015625 2 742.393867 1482.77318 NaN NaN NaN NaN NaN NaN NaN 79.535 1 79.535 79.035 80.035 0 0 0 0 0.22632 1 15477 15477 0.026206 0 1 24750 7771 16245 16251 24514 24514 0.051106290201232696 KVSESVIDV 9 Unmodified _KVSESVIDV_ 0 0 0 ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 ENSG00000144747|ENST00000398559|TMF1 ENSG00000144747|ENST00000398559|TMF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 488.27197265625 2 488.27149 974.528426 -0.40674 -0.0001986 -0.14648 -7.1523E-05 -0.55322 -0.00027012 488.27130002306694 81.984 0.61704 78.296 77.945 78.562 -3.6879 28 17 2 0 0 0 0.45972 1 15583 15583 8.1555 3.2585 1 1326200 24751 4578 16246 16252 24515 24515 0.04014330486484141 KVSESVIDV 9 Unmodified _KVSESVIDV_ 0 0 0 ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 ENSG00000144747|ENST00000398559|TMF1 ENSG00000144747|ENST00000398559|TMF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 488.27149 974.528426 0.13605 6.6431E-05 -0.51917 -0.0002535 -0.38312 -0.00018707 488.27123023996813 81.776 0.62415 78.219 77.995 78.619 -3.557 -0.019609 -7.3699E-05 NaN 8.1555 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1668000 24752 4578 16246 16252 0.04014330486484141 KVSESVIDV 9 Unmodified _KVSESVIDV_ 0 0 0 ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 ENSG00000144747|ENST00000398559|TMF1 ENSG00000144747|ENST00000398559|TMF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 488.27149 974.528426 0.19227 9.3881E-05 -0.56927 -0.00027796 -0.377 -0.00018408 488.27107966239055 82.075 0.47166 78.201 77.961 78.433 -3.8736 -0.037432 -0.00012262 NaN 8.1555 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1246900 24753 4578 16246 16252 0.04014330486484141 KVSKKKLK 8 Unmodified _KVSKKKLK_ 0 0 0 ENST00000546847.5_1_12:49315769-49317670:-|nuORF;ENSG00000134285|ENST00000550765|FKBP11 ENST00000546847.5_1_12:49315769-49317670:-|nuORF ENST00000546847.5_1_12:49315769-49317670:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 479.84130859375 2 479.84222 957.669886 NaN NaN NaN NaN NaN NaN NaN 163.94 1 158.87 158.37 159.37 -5.0648 0 0 0 0.2396 1 31934 31934 0.063987 0.055711 1 24754 3840 16247 16253 24516 24516 0.18935793370258125 KVSTWGPG 8 Unmodified _KVSTWGPG_ 0 0 0 ENST00000463083.1_2_6:34214793-34215048:-|nuORF ENST00000463083.1_2_6:34214793-34215048:-|nuORF ENST00000463083.1_2_6:34214793-34215048:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 416.21392822265625 2 416.221603 830.428653 NaN NaN NaN NaN NaN NaN NaN 29.306 1 27.413 26.913 27.913 -1.8928 0 0 0 0.23294 1 4980 4980 1.7423 1.6194 1 24755 10097 16248 16254 24517 24517 0.006655576631942495 KVTDYAGFY 9 Unmodified _KVTDYAGFY_ 0 0 0 REV__SLC25A31|p.P217Afs*28|1|0.42|ENSG00000151475|chr4:127768762-127768763|-/A|frameshift_variant REV__SLC25A31|p.P217Afs*28|1|0.42|ENSG00000151475|chr4:127768762-127768763|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2607421875 2 532.258382 1062.50221 0.40317 0.00021459 -1.2031 -0.00064035 -0.79991 -0.00042576 532.2577404571941 39.041 1.2621 36.599 36.054 37.316 -2.4419 81 35 3 0 0 0 0.68435 1 7020 7020 7.2892 0 1 5941900 + 24756 17070 16249 16255 24518 24518 -0.026539386850117808 KVTSYTRERQ 10 Unmodified _KVTSYTRERQ_ 0 0 0 REV__nc|ENSG00000135333|Q15375-2|EPHA7 REV__nc|ENSG00000135333|Q15375-2|EPHA7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0468444824219 4 317.674289 1266.66805 -0.57913 -0.00018398 1.0782 0.00034253 0.4991 0.00015855 317.6744090529673 15.189 1.2819 15.189 15.087 16.369 0 42 36 2 0 0 0 0.91149 1 2462 2462 0.12286 0 1 458280 + 24757 16260 16250 16256 24519 24519 0.045380878236983335 KVVKKLRF 8 Unmodified _KVVKKLRF_ 0 0 0 REV__OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant REV__OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 509.3004455566406 2 509.350212 1016.68587 NaN NaN NaN NaN NaN NaN NaN 145.08 1 140.01 139.51 140.51 -5.0671 0 0 0 0.21486 1 28020 28020 4.756 3.9624 1 + 24758 14561 16251 16257 24520 24520 0.1781949960716247 KVVKPKSPEPE 11 Unmodified _KVVKPKSPEPE_ 0 0 0 LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant;nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;LIMCH1|p.T960Pfs*48|1|0.18|ENSG00000064042|chr4:41685768-41685768|A/-|frameshift_variant;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1 LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650390625 4 310.184223 1236.70779 -0.61912 -0.00019204 -0.9398 -0.00029151 -1.5589 -0.00048355 310.43468107474723 12.51 0.17074 12.51 12.411 12.582 0 6 4 2 0 0 0 0.82427 1 1752 1752 0.40827 0.17242 1 157970 24759 12075 16252 16258 24521 24521 0.09890214774395645 KVVPESLFTS 10 Unmodified _KVVPESLFTS_ 0 0 0 REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 369.18206787109375 3 369.541252 1105.60193 0.48994 0.00018105 -2.6303 -0.000972 -2.1403 -0.00079094 369.54000799352394 22.992 0.13656 21.439 21.338 21.474 -1.5532 5 3 2 0 0 0 1.1138 1 3939 3939 10.151 1.995 1 174830 + 24760 24049 16253 16259 24522 24522 0.05334878928965736 KVVPLPKA 8 Unmodified _KVVPLPKA_ 0 0 0 REV__ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant REV__ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.29058837890625 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 135.13 1 130.23 129.73 130.73 -4.8951 0 0 0 0.21486 1 25956 25956 2.3027 1.5091 1 + 24761 18227 16254 16260 24523 24523 0.13276457524796115 KVVSKFMKK 9 Unmodified _KVVSKFMKK_ 0 0 0 REV__nc|ENSG00000151364|Q9BQ13-2|KCTD14 REV__nc|ENSG00000151364|Q9BQ13-2|KCTD14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.77197265625 2 547.841362 1093.66817 NaN NaN NaN NaN NaN NaN NaN 11.356 1 11.356 10.856 11.856 0 0 0 0 0.19627 1 1500 1500 0.073264 0.029476 1 + 24762 17064 16255 16261 24524 24524 0.12508416290006608 KVVVPIIKQQ 10 Unmodified _KVVVPIIKQQ_ 0 0 0 REV__nc|ENSG00000142186|Q96KG9-2|SCYL1 REV__nc|ENSG00000142186|Q96KG9-2|SCYL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.324462890625 2 576.379166 1150.74378 NaN NaN NaN NaN NaN NaN NaN 158.78 1 153.98 153.48 154.48 -4.7952 0 0 0 0.22588 1 31576 31576 3.5965 0 1 + 24763 16658 16256 16262 24525 24525 0.174437167419228 KVYIFFKMLFF 11 Unmodified _KVYIFFKMLFF_ 0 0 0 ENST00000406875.7_1_7:139250529-139250691:-|nuORF ENST00000406875.7_1_7:139250529-139250691:-|nuORF ENST00000406875.7_1_7:139250529-139250691:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3876342773438 2 741.914527 1481.8145 NaN NaN NaN NaN NaN NaN NaN 155.23 1 149.94 149.44 150.44 -5.2854 0 0 0 0.23379 1 30106 30106 5.2969 0.39987 1 24764 9546 16257 16263 24526 24526 0.09286673735232398 KVYILKKA 8 Unmodified _KVYILKKA_ 0 0 0 tr|U7T4U1|U7T4U1_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00553PE=3SV=1 tr|U7T4U1|U7T4U1_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00553PE=3SV=1 tr|U7T4U1|U7T4U1_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00553PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7884826660156 2 481.823495 961.632438 NaN NaN NaN NaN NaN NaN NaN 161.95 1 156.76 156.26 157.26 -5.1878 0 0 0 0.21486 1 31435 31435 5.2307 0 1 24765 26435 16258 16264 24527 24527 0.15008702104660188 KVYRFKKL 8 Unmodified _KVYRFKKL_ 0 0 0 REV__ENST00000496441.5_1_2:174219691-174228743:+|nuORF REV__ENST00000496441.5_1_2:174219691-174228743:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2681274414062 2 541.347669 1080.68079 NaN NaN NaN NaN NaN NaN NaN 131.85 1 127.05 126.55 127.55 -4.799 0 0 0 0.23025 1 25382 25382 4.2837 3.8754 1 + 24766 16776 16259 16265 24528 24528 0.14367195744557648 KWARRPRPRR 10 Unmodified _KWARRPRPRR_ 0 0 0 REV__TSPYL2|p.I84Sfs*63|2|0.12|ENSG00000184205|chrX:53082741-53082741|G/-|frameshift_variant REV__TSPYL2|p.I84Sfs*63|2|0.12|ENSG00000184205|chrX:53082741-53082741|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2466735839844 3 460.284956 1377.83304 -0.71932 -0.00033109 -0.088392 -4.0685E-05 -0.80771 -0.00037178 460.28492947471995 13.946 0.13843 12.773 12.69 12.828 -1.173 5 3 2 0 0 0 0.76625 1 1841 1841 0.62683 0.17231 1 429430 + 24767 25493 16260 16266 24529 24529 0.15923409264655675 KWARRPRPRR 10 Unmodified _KWARRPRPRR_ 0 0 0 REV__TSPYL2|p.I84Sfs*63|2|0.12|ENSG00000184205|chrX:53082741-53082741|G/-|frameshift_variant REV__TSPYL2|p.I84Sfs*63|2|0.12|ENSG00000184205|chrX:53082741-53082741|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 460.284956 1377.83304 0.087029 4.0058E-05 -1.1416 -0.00052546 -1.0546 -0.0004854 460.618930956721 13.081 0.20576 13.081 12.997 13.203 0 0.21925 -0.0011909 NaN 0.62683 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 412750 + 24768 25493 16260 16266 0.15923409264655675 KWARRPRPRR 10 Unmodified _KWARRPRPRR_ 0 0 0 REV__TSPYL2|p.I84Sfs*63|2|0.12|ENSG00000184205|chrX:53082741-53082741|G/-|frameshift_variant REV__TSPYL2|p.I84Sfs*63|2|0.12|ENSG00000184205|chrX:53082741-53082741|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 460.284956 1377.83304 -0.71932 -0.00033109 -0.088392 -4.0685E-05 -0.80771 -0.00037178 460.28492947471995 13.946 0.13843 12.773 12.69 12.828 -1.173 -0.088775 0.00026337 NaN 0.62683 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 429430 + 24769 25493 16260 16266 0.15923409264655675 KWARRPRPRR 10 Unmodified _KWARRPRPRR_ 0 0 0 REV__TSPYL2|p.I84Sfs*63|2|0.12|ENSG00000184205|chrX:53082741-53082741|G/-|frameshift_variant REV__TSPYL2|p.I84Sfs*63|2|0.12|ENSG00000184205|chrX:53082741-53082741|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 460.284956 1377.83304 -1.6108 -0.00074144 -0.53685 -0.0002471 -2.1477 -0.00098854 460.28469864568217 13.942 0.17487 12.731 12.609 12.784 -1.2106 -0.13048 -0.00035589 NaN 0.62683 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 231980 + 24770 25493 16260 16266 0.15923409264655675 KWASDIFI 8 Unmodified _KWASDIFI_ 0 0 0 REV__ENSG00000187054|ENST00000508048|TMPRSS11A REV__ENSG00000187054|ENST00000508048|TMPRSS11A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2652893066406 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 49.975 1 49.975 49.475 50.475 0 0 0 0 0.23312 1 9456 9456 6.2058 0 1 + 24771 19074 16261 16267 24530 24530 0.02734972902840127 KWEAWFAERR 10 Unmodified _KWEAWFAERR_ 0 0 0 REV__ENSG00000173991|ENST00000309889|TCAP REV__ENSG00000173991|ENST00000309889|TCAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2376403808594 3 460.238678 1377.6942 NaN NaN NaN NaN NaN NaN NaN 33.762 1 31.444 30.944 31.944 -2.3175 0 0 0 2.8426 1 6183 6183 0.26539 0 1 + 24772 18385 16262 16268 24531 24531 0.020464017858103034 KWFKKMEKRRW 11 Unmodified _KWFKKMEKRRW_ 0 0 0 REV__ENSG00000138600|ENST00000261854|SPPL2A REV__ENSG00000138600|ENST00000261854|SPPL2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2640380859375 3 541.641529 1621.90276 NaN NaN NaN NaN NaN NaN NaN 104.38 1 104.38 103.88 104.88 0 0 0 0 0.22632 1 20511 20511 0.026206 0 1 + 24773 16466 16263 16269 24532 24532 0.1166810709839865 KWFTKRWPEEY 11 Unmodified _KWFTKRWPEEY_ 0 0 0 tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1 tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1 tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.394775390625 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 142.74 1 142.74 142.24 143.24 0 0 0 0 0.22632 1 28465 28465 0.11104 0.11104 1 24774 25910 16264 16270 24533 24533 0.0159609344304954 KWFTKRWPEEY 11 Unmodified _KWFTKRWPEEY_ 0 0 0 tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1 tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1 tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6829223632812 3 523.933143 1568.7776 0.11671 6.1147E-05 0.71535 0.00037479 0.83205 0.00043594 523.9330775698421 119.42 0.45508 114.9 114.73 115.19 -4.5221 16 12 2 0 0 0 0.89074 1 23547 23547 1.4551 1.2831 1 5315600 24775 25910 16264 16270 24534 24534 0.0159609344304954 KWFTSQVIRNL 11 Unmodified _KWFTSQVIRNL_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24176025390625 3 464.597983 1390.77212 0.15505 7.2035E-05 -1.0665 -0.00049548 -0.91142 -0.00042344 465.26817469825085 60.462 0.98436 57.238 56.818 57.803 -3.2237 53 27 3 0 0 0 0.65989 1 11365 11365 0.58532 0.068901 1 2175900 24776 899 16265 16271 24535 24535 0.0923641465124092 KWIKYRKG 8 Unmodified _KWIKYRKG_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2127380371094 3 360.222188 1077.64473 NaN NaN NaN NaN NaN NaN NaN 36.405 1 34.057 33.557 34.557 -2.3479 0 0 0 0.23881 1 6436 6436 0.25148 0.22527 1 24777 5514 16266 16272 24536 24536 0.109017385676907 KWIRYFYRIRK 11 Unmodified _KWIRYFYRIRK_ 0 0 0 FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3732299804688 2 814.980444 1627.94634 NaN NaN NaN NaN NaN NaN NaN 126.46 1 126.46 125.96 126.96 0 0 0 0 0.22632 1 24956 24956 0.00056442 0 1 24778 11796 16267 16273 24537 24537 0.1574803986718507 KWIRYFYRIRK 11 Unmodified _KWIRYFYRIRK_ 0 0 0 FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3546752929688 2 814.980444 1627.94634 NaN NaN NaN NaN NaN NaN NaN 138.12 1 133.48 132.98 133.98 -4.6413 0 0 0 0.22632 1 27267 27267 0 0 1 24779 11796 16267 16273 24538 24538 0.1574803986718507 KWKKHRQI 8 Unmodified _KWKKHRQI_ 0 0 0 nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;nc|ENSG00000290456|Q8N1L4|CYP4Z2P;ENSG00000186160|ENST00000334194|CYP4Z1 nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21820068359375 3 375.233087 1122.67743 NaN NaN NaN NaN NaN NaN NaN 49.56 1 46.561 46.061 47.061 -2.999 0 0 0 0.21486 1 9064 9064 6.7232 0 1 24780 7038 16268 16274 24539 24539 0.12099945690556524 KWKKKTLY 8 Unmodified _KWKKKTLY_ 0 0 0 ENST00000572218.5_2_17:44107443-44107545:-|nuORF ENST00000572218.5_2_17:44107443-44107545:-|nuORF ENST00000572218.5_2_17:44107443-44107545:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7801513671875 2 547.839677 1093.6648 NaN NaN NaN NaN NaN NaN NaN 74.046 1 74.046 73.546 74.546 0 0 0 0 0.2396 1 14370 14370 0.12286 0 1 24781 11431 16269 16275 24540 24540 0.12171489507682054 KWKWTKRTLS 10 Unmodified _KWKWTKRTLS_ 0 0 0 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 446.3458251953125 3 445.262823 1332.76664 0.34516 0.00015369 -0.30043 -0.00013377 0.044725 1.9914E-05 445.2625648867065 161.52 0.77464 156.33 155.8 156.58 -5.1878 47 21 3 0 0 0 0.76577 1 31298 31298 0.77653 0 1 3641100 24782 5164 16270 16276 24541 24541 0.11356735859408218 KWKWTKRTLS 10 Unmodified _KWKWTKRTLS_ 0 0 0 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 445.262823 1332.76664 0.063891 2.8448E-05 -0.10777 -4.7986E-05 -0.043879 -1.9538E-05 445.2626789372784 160.93 0.74245 156.14 155.82 156.56 -4.7952 -0.16099 0.00011095 NaN 0.77653 47 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3647200 24783 5164 16270 16276 0.11356735859408218 KWKWTKRTLS 10 Unmodified _KWKWTKRTLS_ 0 0 0 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 445.262823 1332.76664 0.14531 6.4701E-05 -0.16657 -7.4167E-05 -0.021261 -9.4666E-06 445.26277421032046 161.57 0.87016 156.43 155.88 156.75 -5.1438 0.12754 3.2411E-05 NaN 0.77653 51 24 3 NaN NaN NaN NaN 0 NaN NaN 0 3827900 24784 5164 16270 16276 0.11356735859408218 KWKWTKRTLS 10 Unmodified _KWKWTKRTLS_ 0 0 0 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 445.262823 1332.76664 0.34516 0.00015369 -0.30043 -0.00013377 0.044725 1.9914E-05 445.2625648867065 161.52 0.77464 156.33 155.8 156.58 -5.1878 0.033453 -0.0001464 NaN 0.77653 47 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3641100 24785 5164 16270 16276 0.11356735859408218 KWLLESAP 8 Unmodified _KWLLESAP_ 0 0 0 REV__ENST00000545177.4_1_6:2855770-2876551:-|nuORF REV__ENST00000545177.4_1_6:2855770-2876551:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1776428222656 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 106.79 1 106.79 106.29 107.29 0 0 0 0 0.21486 1 20995 20995 1.6526 0 1 + 24786 22885 16271 16277 24542 24542 0.043909729028428046 KWLLESAP 8 Unmodified _KWLLESAP_ 0 0 0 REV__ENST00000545177.4_1_6:2855770-2876551:-|nuORF REV__ENST00000545177.4_1_6:2855770-2876551:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1800537109375 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 109.27 1 109.27 108.77 109.77 0 0 0 0 0.21486 1 21484 21484 1.6526 0 1 + 24787 22885 16271 16277 24543 24543 0.043909729028428046 KWLLESAP 8 Unmodified _KWLLESAP_ 0 0 0 REV__ENST00000545177.4_1_6:2855770-2876551:-|nuORF REV__ENST00000545177.4_1_6:2855770-2876551:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1907043457031 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 119.49 1 119.49 118.99 119.99 0 0 0 0 0.21486 1 23545 23545 1.6526 0 1 + 24788 22885 16271 16277 24544 24544 0.043909729028428046 KWLLESAP 8 Unmodified _KWLLESAP_ 0 0 0 REV__ENST00000545177.4_1_6:2855770-2876551:-|nuORF REV__ENST00000545177.4_1_6:2855770-2876551:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1799621582031 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 88.154 1 84.404 83.904 84.904 -3.7501 0 0 0 0.21486 1 16871 16871 1.8442 0 1 + 24789 22885 16271 16277 24545 24545 0.043909729028428046 KWLLESAP 8 Unmodified _KWLLESAP_ 0 0 0 REV__ENST00000545177.4_1_6:2855770-2876551:-|nuORF REV__ENST00000545177.4_1_6:2855770-2876551:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.099609375 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 131.48 1 126.71 126.21 127.21 -4.7725 0 0 0 0.21486 1 25310 25310 1.6526 0 1 + 24790 22885 16271 16277 24546 24546 0.043909729028428046 KWLNIRKREYY 11 Unmodified _KWLNIRKREYY_ 0 0 0 tr|U7SLI3|U7SLI3_FUSNUADP-L-glycero-D-manno-heptose-6-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hldDPE=3SV=1 tr|U7SLI3|U7SLI3_FUSNUADP-L-glycero-D-manno-heptose-6-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hldDPE=3SV=1 tr|U7SLI3|U7SLI3_FUSNUADP-L-glycero-D-manno-heptose-6-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hldDPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6780395507812 3 523.628054 1567.86233 NaN NaN NaN NaN NaN NaN NaN 98.896 1 98.896 98.396 99.396 0 0 0 0 0.23698 1 19389 19389 0.094841 0 1 24791 25985 16272 16278 24547 24547 0.10111463979660584 KWLYQLLD 8 Unmodified _KWLYQLLD_ 0 0 0 ENST00000493417.5_1_9:132839594-132891041:+|nuORF;ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107 ENST00000493417.5_1_9:132839594-132891041:+|nuORF ENST00000493417.5_1_9:132839594-132891041:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2011413574219 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 82.603 1 78.905 78.405 79.405 -3.6985 0 0 0 0.21486 1 15755 15755 6.2058 1.3088 1 24792 4741 16273 16279 24548 24548 0.05019217482708882 KWRQRIRKWRQ 11 Unmodified _KWRQRIRKWRQ_ 0 0 0 REV__ENST00000595455.1_1_19:36244761-36245372:+|nuORF REV__ENST00000595455.1_1_19:36244761-36245372:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.6771850585938 3 547.662203 1639.96478 NaN NaN NaN NaN NaN NaN NaN 166.29 1 161.5 161 162 -4.7898 0 0 0 0.22632 1 33390 33390 0.094841 0.094841 1 + 24793 19906 16274 16280 24549 24549 0.17039594561742888 KWRREWSRRRL 11 Unmodified _KWRREWSRRRL_ 0 0 0 REV__ENST00000573267.1_3_16:74729599-74734630:-|nuORF REV__ENST00000573267.1_3_16:74729599-74734630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7793579101562 3 543.650075 1627.92839 NaN NaN NaN NaN NaN NaN NaN 48.234 1 45.365 44.865 45.865 -2.869 0 0 0 0.22632 1 9122 9122 0.0072825 0 1 + 24794 23184 16275 16281 24550 24550 0.13954717665023963 KWRREWSRRRL 11 Unmodified _KWRREWSRRRL_ 0 0 0 REV__ENST00000573267.1_3_16:74729599-74734630:-|nuORF REV__ENST00000573267.1_3_16:74729599-74734630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7825927734375 3 543.650075 1627.92839 NaN NaN NaN NaN NaN NaN NaN 157.56 1 152.29 151.79 152.79 -5.2712 0 0 0 0.22632 1 30563 30563 0.094841 0.094841 1 + 24795 23184 16275 16281 24551 24551 0.13954717665023963 KWRRPRDKQTL 11 Unmodified _KWRRPRDKQTL_ 0 0 0 REV__PRAMEF14|p.H283Afs*56|1|0.3|ENSG00000204481|chr1:13344057-13344058|-/C|frameshift_variant REV__PRAMEF14|p.H283Afs*56|1|0.3|ENSG00000204481|chr1:13344057-13344058|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3843994140625 2 742.433858 1482.85316 NaN NaN NaN NaN NaN NaN NaN 170.3 1 165.43 164.93 165.93 -4.873 0 0 0 0.22632 1 33693 33693 0.58532 0.57936 1 + 24796 24502 16276 16282 24552 24552 0.13105115413986823 KWRRRVYQKRF 11 Unmodified _KWRRRVYQKRF_ 0 0 0 REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2744140625 3 541.654937 1621.94298 0.31324 0.00016967 -2.9764 -0.0016122 -2.6632 -0.0014425 541.6533526138179 141.62 0.17427 141.62 141.57 141.75 0 5 4 2 0 0 0 0.96197 1 28234 28234 2.6312 2.1767 1 3874400 + 24797 14027 16277 16283 24553 24553 0.15688789813202675 KWRRRVYQKRF 11 Unmodified _KWRRRVYQKRF_ 0 0 0 REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26953125 3 541.654937 1621.94298 0.38474 0.0002084 1.791 0.00097008 2.1757 0.0011785 541.9892956687356 159 0.21329 154.21 154.05 154.26 -4.7952 7 5 2 0 0 0 0.89126 1 31611 31611 0.03141 0.03141 1 797290 + 24798 14027 16277 16283 24554 24554 0.15688789813202675 KWRRRVYQKRF 11 Unmodified _KWRRRVYQKRF_ 0 0 0 REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2740478515625 3 541.654937 1621.94298 0.13096 7.0935E-05 3.9526 0.002141 4.0836 0.0022119 541.6553039818202 139.88 0.1366 134.93 134.85 134.98 -4.952 5 3 2 0 0 0 0.89134 1 26903 26903 0.094841 0.094277 1 1818300 + 24799 14027 16277 16283 24555 24555 0.15688789813202675 KWRRRVYQKRF 11 Unmodified _KWRRRVYQKRF_ 0 0 0 REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2764892578125 3 541.654937 1621.94298 0.3792 0.0002054 -2.643 -0.0014316 -2.2638 -0.0012262 541.6532895268531 143.78 0.14157 138.89 138.79 138.93 -4.8982 5 3 2 0 0 0 0.89126 1 27742 27742 0.11104 0 1 3932200 + 24800 14027 16277 16283 24556 24556 0.15688789813202675 KWRRRVYQKRF 11 Unmodified _KWRRRVYQKRF_ 0 0 0 REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2608642578125 3 541.654937 1621.94298 0.30524 0.00016533 0.82807 0.00044853 1.1333 0.00061386 541.9904893175863 135.52 0.21249 130.69 130.56 130.77 -4.8307 6 5 2 0 0 0 0.96227 1 26099 26099 0.08335 0.08335 1 1113300 + 24801 14027 16277 16283 24557 24557 0.15688789813202675 KWRRRVYQKRF 11 Unmodified _KWRRRVYQKRF_ 0 0 0 REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.265625 3 541.654937 1621.94298 0.44523 0.00024116 2.7935 0.0015131 3.2387 0.0017543 541.9913169194281 151.05 0.18176 145.88 145.75 145.93 -5.1759 6 4 2 0 0 0 0.96197 1 29277 29277 2.6312 2.1253 1 789850 + 24802 14027 16277 16283 24558 24558 0.15688789813202675 KWRTHKQLT 9 Unmodified _KWRTHKQLT_ 0 0 0 REV__ENSG00000171425|ENST00000270451|ZNF581 REV__ENSG00000171425|ENST00000270451|ZNF581 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 599.4290161132812 2 599.346189 1196.67783 NaN NaN NaN NaN NaN NaN NaN 165.37 1 165.37 164.87 165.87 0 0 0 0 0.19636 1 33551 33551 2.4985 2.4723 1 + 24803 18222 16278 16284 24559 24559 0.08735320619734921 KWRWRWQQTQQ 11 Unmodified _KWRWRWQQTQQ_ 0 0 0 OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7728881835938 3 544.283169 1629.82768 0.22093 0.00012025 3.9813 0.0021669 4.2022 0.0022872 544.2841641870054 134.93 0.10736 130.29 130.23 130.34 -4.6399 4 2 2 0 0 0 0.96227 1 26607 26607 0.094841 0.011491 1 732080 24804 12743 16279 16285 24560 24560 0.03795640891553376 KWSFLFWFFKE 11 Unmodified _KWSFLFWFFKE_ 0 0 0 L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|132|3|anti-sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|132|3|anti-sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|132|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2632446289062 3 522.271096 1563.79146 NaN NaN NaN NaN NaN NaN NaN 156.96 1 151.69 151.19 152.19 -5.2712 0 0 0 0.22632 1 30448 30448 0.094841 0 1 24805 12063 16280 16286 24561 24561 0.03211370942085523 KWSKSSYRKWQ 11 Unmodified _KWSKSSYRKWQ_ 0 0 0 REV__ENST00000568469.5_1_16:18995385-19051723:+|nuORF REV__ENST00000568469.5_1_16:18995385-19051723:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.393798828125 2 742.393867 1482.77318 NaN NaN NaN NaN NaN NaN NaN 137.43 1 132.79 132.29 133.29 -4.6413 0 0 0 0.22632 1 27123 27123 1.4551 0 1 + 24806 18169 16281 16287 24562 24562 0.05110629020100532 KWTRWKCFIES 11 Unmodified _KWTRWKCFIES_ 0 0 0 REV__ENST00000379143.9_1_20:5098158-5098257:-|nuORF REV__ENST00000379143.9_1_20:5098158-5098257:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 495.25445556640625 3 495.25534 1482.74419 NaN NaN NaN NaN NaN NaN NaN 72.74 1 69.201 68.701 69.701 -3.5385 0 0 0 0.22632 1 13792 13792 0.03141 0 1 + 24807 21131 16282 16288 24563 24563 0.022127683994995095 KWVNKHLMKVR 11 Unmodified _KWVNKHLMKVR_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;ENST00000467673.5_1_1:39571193-39720158:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1;ENST00000467673.5_1_1:39571193-39720158:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 719.9252319335938 2 719.926823 1437.83909 NaN NaN NaN NaN NaN NaN NaN 168.07 1 163.18 162.68 163.68 -4.8916 0 0 0 0.2367 1 33111 33111 2.9952 1.6657 1 24808 3487;10155 16283 16289 24564 24564 0.13768746661276055 KWVSNISK 8 Unmodified _KWVSNISK_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7794189453125 2 481.276909 960.539266 0.12047 5.7979E-05 0.047624 2.292E-05 0.16809 8.0899E-05 481.27687248266113 60.892 2.1052 57.523 56.391 58.497 -3.3694 85 59 2 0 0 0 8448 1 11300 11300 10.074 0 1 1455300 24809 4896 16284 16290 24565 24565 0.057417776514284924 KWWDYRHEPPR 11 Unmodified _KWWDYRHEPPR_ 0 0 0 AluSp_dup1142|chr1:32231212-32231509:+|1.8451840621425188|0.2089834518128584|3.14|481.0|23|3|anti-sense AluSp_dup1142|chr1:32231212-32231509:+|1.8451840621425188|0.2089834518128584|3.14|481.0|23|3|anti-sense AluSp_dup1142|chr1:32231212-32231509:+|1.8451840621425188|0.2089834518128584|3.14|481.0|23|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3914184570312 2 785.389116 1568.76368 NaN NaN NaN NaN NaN NaN NaN 130.89 1 126.11 125.61 126.61 -4.7725 0 0 0 0.23698 1 25194 25194 0.96228 0.61164 1 24810 133 16285 16291 24566 24566 0.0020486073458414467 KWWWWWFSFY 10 Unmodified _KWWWWWFSFY_ 0 0 0 REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2694091796875 3 541.252036 1620.73428 NaN NaN NaN NaN NaN NaN NaN 19.775 1 19.775 19.275 20.275 0 0 0 0 2.8426 1 3247 3247 0.26539 0 1 + 24811 20397 16286 16292 24567 24567 -0.05126051543606991 KWWWWWFSFY 10 Unmodified _KWWWWWFSFY_ 0 0 0 REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2766723632812 3 541.252036 1620.73428 NaN NaN NaN NaN NaN NaN NaN 37.405 1 37.405 36.905 37.905 0 0 0 0 2.8426 1 6915 6915 0.043787 0 1 + 24812 20397 16286 16292 24568 24568 -0.05126051543606991 KWWWWWFSFY 10 Unmodified _KWWWWWFSFY_ 0 0 0 REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2778930664062 3 541.252036 1620.73428 NaN NaN NaN NaN NaN NaN NaN 93.856 1 93.856 93.356 94.356 0 0 0 0 2.8426 1 18373 18373 0.043787 0.043223 1 + 24813 20397 16286 16292 24569 24569 -0.05126051543606991 KWWWWWFSFY 10 Unmodified _KWWWWWFSFY_ 0 0 0 REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3779907226562 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 138.38 1 138.38 137.88 138.88 0 0 0 0 2.8426 1 27471 27471 0.043787 0.043223 1 + 24814 20397 16286 16292 24570 24570 -0.05126051543606991 KWWWWWFSFY 10 Unmodified _KWWWWWFSFY_ 0 0 0 REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3723754882812 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 97.632 1 93.534 93.034 94.034 -4.0978 0 0 0 0.22588 1 19160 19160 0.45834 0.45834 1 + 24815 20397 16286 16292 24571 24571 -0.05126051543606991 KWWWWWFSFY 10 Unmodified _KWWWWWFSFY_ 0 0 0 REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.270751953125 3 541.252036 1620.73428 NaN NaN NaN NaN NaN NaN NaN 99.845 1 95.713 95.213 96.213 -4.1326 0 0 0 2.8426 1 19619 19619 0.043787 0 1 + 24816 20397 16286 16292 24572 24572 -0.05126051543606991 KWWWWWFSFY 10 Unmodified _KWWWWWFSFY_ 0 0 0 REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3760375976562 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 117.99 1 113.38 112.88 113.88 -4.6106 0 0 0 0.22588 1 22642 22642 0.45834 0.10771 1 + 24817 20397 16286 16292 24573 24573 -0.05126051543606991 KWWWWWFSFY 10 Unmodified _KWWWWWFSFY_ 0 0 0 REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.370849609375 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 99.708 1 95.752 95.252 96.252 -3.9564 0 0 0 2.8426 1 19148 19148 0.13989 0.04505 1 + 24818 20397 16286 16292 24574 24574 -0.05126051543606991 KWWWWWFSFY 10 Unmodified _KWWWWWFSFY_ 0 0 0 REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.272216796875 3 541.252036 1620.73428 NaN NaN NaN NaN NaN NaN NaN 117.39 1 113.03 112.53 113.53 -4.3591 0 0 0 2.8426 1 22596 22596 0.043787 0.043787 1 + 24819 20397 16286 16292 24575 24575 -0.05126051543606991 KWWWWWFSFY 10 Unmodified _KWWWWWFSFY_ 0 0 0 REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2738647460938 3 541.252036 1620.73428 0.36376 0.00019688 4.16 0.0022516 4.5237 0.0024485 541.5883267950619 142.07 0.17305 137.2 137.1 137.27 -4.8678 10 4 3 0 0 0 1.1344 1 27424 27424 0.063865 0 1 980520 + 24820 20397 16286 16292 24576 24576 -0.05126051543606991 KWYQLLEV 8 Unmodified _KWYQLLEV_ 0 0 0 ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1 ENSG00000168394|ENST00000354258|TAP1 ENSG00000168394|ENST00000354258|TAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 108.66 1 108.66 108.16 109.16 0 0 0 0 0.21486 1 21368 21368 3.5965 0.8613 1 24821 5903 16287 16293 24577 24577 0.05019217482708882 KWYQLLEV 8 Unmodified _KWYQLLEV_ 0 0 0 ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1 ENSG00000168394|ENST00000354258|TAP1 ENSG00000168394|ENST00000354258|TAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201416015625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 116.6 1 116.6 116.1 117.1 0 0 0 0 0.21486 1 22962 22962 1.4819 0.28856 1 24822 5903 16287 16293 24578 24578 0.05019217482708882 KWYQLLEV 8 Unmodified _KWYQLLEV_ 0 0 0 ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1 ENSG00000168394|ENST00000354258|TAP1 ENSG00000168394|ENST00000354258|TAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016906738281 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 126.53 1 126.53 126.03 127.03 0 0 0 0 0.21486 1 24970 24970 1.4819 0 1 24823 5903 16287 16293 24579 24579 0.05019217482708882 KWYQLLEV 8 Unmodified _KWYQLLEV_ 0 0 0 ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1 ENSG00000168394|ENST00000354258|TAP1 ENSG00000168394|ENST00000354258|TAP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017822265625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 112.74 1 108.21 107.71 108.71 -4.5259 0 0 0 0.21486 1 21640 21640 3.5965 1.098 1 24824 5903 16287 16293 24580 24580 0.05019217482708882 KYCRYYAK 8 Unmodified _KYCRYYAK_ 0 0 0 nc|ENSG00000152520|Q58A45-4|PAN3;ENST00000503791.5_1_13:28712794-28846220:+|nuORF;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3 nc|ENSG00000152520|Q58A45-4|PAN3 nc|ENSG00000152520|Q58A45-4|PAN3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7933959960938 2 547.776219 1093.53789 NaN NaN NaN NaN NaN NaN NaN 18.907 1 17.596 17.096 18.096 -1.3109 0 0 0 0.20294 1 3095 3095 23.148 0.41214 1 24825 4928 16288 16294 24581 24581 -0.005141797090118416 KYEENLKAE 9 Unmodified _KYEENLKAE_ 0 0 0 DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2176513671875 3 375.192511 1122.5557 -0.15004 -5.6293E-05 0.22132 8.3039E-05 0.071285 2.6746E-05 375.19249188847374 22.645 0.66204 22.645 22.398 23.06 0 59 18 5 0 0 0 0.545 1 3838 3838 28.234 7.6527 1 17114000 24826 808 16289 16295 24582 24582 -0.0006718597312556085 KYEENLKAE 9 Unmodified _KYEENLKAE_ 0 0 0 DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2176513671875 3 375.192511 1122.5557 0.72088 0.00027047 -0.63316 -0.00023756 0.087721 3.2912E-05 375.19211092518617 24.25 0.62782 22.697 22.46 23.088 -1.5532 58 17 4 0 0 0 0.76312 1 4204 4204 15.739 0 1 11105000 24827 808 16289 16295 24583 24583 -0.0006718597312556085 KYFAMDIEDE 10 Unmodified _KYFAMDIEDE_ 0 0 0 nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1 nc|ENSG00000197381|P78563-4|ADARB1 nc|ENSG00000197381|P78563-4|ADARB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7755737304688 2 630.776279 1259.538 NaN NaN NaN NaN NaN NaN NaN 42.354 1 39.703 39.203 40.203 -2.651 0 0 0 0.22588 1 7624 7624 10.074 1.3285 1 24828 12541 16290 16296 24584 24584 -0.08138269290316202 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 433.5311584472656 3 431.852266 1292.53497 0.057927 2.5016E-05 -0.073098 -3.1568E-05 -0.015171 -6.5515E-06 431.85248393621015 75.187 2.4738 71.553 71.124 73.598 -3.6337 266 70 6 0 0 0 0.45972 1 14275 14275 14.987 9.5838 1 525630000 24829 3285 16291 16297 24585 24585 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 431.852266 1292.53497 -0.20202 -8.7245E-05 0.068227 2.9464E-05 -0.1338 -5.7781E-05 431.85246350302543 75.086 2.5478 71.721 71.307 73.855 -3.3643 0.091946 0.00015129 NaN 14.987 230 72 6 NaN NaN NaN NaN 0 NaN NaN 0 559560000 24830 3285 16291 16297 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 431.852266 1292.53497 0.097742 4.221E-05 -0.16669 -7.1987E-05 -0.068951 -2.9777E-05 431.8522972250391 75.337 2.6712 71.614 71.197 73.869 -3.7227 -0.015585 -0.00015307 NaN 14.987 236 76 6 NaN NaN NaN NaN 0 NaN NaN 0 441280000 24831 3285 16291 16297 -0.09959776352798144 KYFKIAKILIL 11 Unmodified _KYFKIAKILIL_ 0 0 0 REV__tr|U7T3T9|U7T3T9_FUSNUBbox-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00258PE=4SV=1 REV__tr|U7T3T9|U7T3T9_FUSNUBbox-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00258PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 675.1171875 2 675.449591 1348.88463 0.43185 0.00029169 0.60242 0.0004069 1.0343 0.00069859 675.4506466338873 165.39 0.2352 165.39 165.22 165.46 0 9 6 2 0 0 0 0.89136 1 33507 33507 0.00056442 0 1 24353000 + 24832 25377 16292 16298 24586 24586 0.22414295395378758 KYFTEAGL 8 Unmodified _KYFTEAGL_ 0 0 0 BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16455078125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 176.34 1 171.44 170.94 171.94 -4.9008 0 0 0 0.2386 1 35156 35156 0.25148 0.17821 1 24833 347 16293 16299 24587 24587 0.003546936318457483 KYHKKKHKLLR 11 Unmodified _KYHKKKHKLLR_ 0 0 0 ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant;nc|ENSG00000116539|Q9NR48|ASH1L ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 494.9909362792969 3 493.652533 1477.93577 0.19692 9.7208E-05 -0.82364 -0.00040659 -0.62673 -0.00030939 493.65210472009693 151.81 0.99809 151.81 151.34 152.34 0 99 27 5 0 0 0 0.66234 1 30397 30397 0.50596 0.33396 1 41993000 24834 232 16294 16300 24588 24588 0.21592057212774307 KYHKKKHKLLR 11 Unmodified _KYHKKKHKLLR_ 0 0 0 ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant;nc|ENSG00000116539|Q9NR48|ASH1L ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 493.652533 1477.93577 0.20681 0.00010209 0.24724 0.00012205 0.45405 0.00022414 493.65291277088284 157.34 0.17764 152.07 151.94 152.11 -5.2712 0.13327 0.0015101 NaN 0.50596 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 662920 24835 232 16294 16300 0.21592057212774307 KYHPRKMSYMC 11 Unmodified _KYHPRKMSYMC_ 0 0 0 ENST00000536441.6_2_11:94906305-94906422:-|nuORF ENST00000536441.6_2_11:94906305-94906422:-|nuORF ENST00000536441.6_2_11:94906305-94906422:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77728271484375 3 481.894649 1442.66212 0.37291 0.0001797 -1.6851 -0.00081203 -1.3122 -0.00063233 481.89253826318736 161.23 0.10828 155.98 155.91 156.02 -5.2527 4 2 2 0 0 0 0.89074 1 31283 31283 1.4551 1.4237 1 664330 24836 11025 16295 16301 24589 24589 -0.041507932754711874 KYIETKKKI 9 Unmodified _KYIETKKKI_ 0 0 0 REV__tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1 REV__tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3182373046875 2 575.863349 1149.71214 0.32284 0.00018591 -3.5461 -0.0020421 -3.2232 -0.0018561 576.3649591446698 145.88 0.21054 140.88 140.74 140.95 -5 6 5 2 0 0 0 0.64791 1 28194 28194 0.12781 0.098532 1 1000400 + 24837 25115 16296 16302 24590 24590 0.1432772398798079 KYIKKKKKKYE 11 Unmodified _KYIKKKKKKYE_ 0 0 0 TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6;ENST00000473131.5_1_20:5924535-5931132:-|nuORF TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3773193359375 2 742.471586 1482.92862 NaN NaN NaN NaN NaN NaN NaN 115.08 1 110.53 110.03 111.03 -4.555 0 0 0 0.22632 1 22096 22096 0.094841 0 1 24838 1756 16297 16303 24591 24591 0.20647279821673692 KYIKKKLLIE 10 Unmodified _KYIKKKLLIE_ 0 0 0 REV__IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant REV__IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 638.3521728515625 2 638.423574 1274.83259 NaN NaN NaN NaN NaN NaN NaN 173.58 1 168.79 168.29 169.29 -4.7898 0 0 0 2.8426 1 35421 35421 0.69767 0 1 + 24839 19588 16298 16304 24592 24592 0.2061713198158941 KYIRKHHL 8 Unmodified _KYIRKHHL_ 0 0 0 REV__nc|ENSG00000052802|Q15800-2|MSMO1 REV__nc|ENSG00000052802|Q15800-2|MSMO1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7835083007812 2 547.832717 1093.65088 NaN NaN NaN NaN NaN NaN NaN 121.18 1 116.49 115.99 116.99 -4.6873 0 0 0 0.23664 1 23261 23261 3.2813 2.9017 1 + 24840 14093 16299 16305 24593 24593 0.10780256799216659 KYIYFYQRYLI 11 Unmodified _KYIYFYQRYLI_ 0 0 0 ENST00000502773.5_1_4:157683422-157683533:-|nuORF ENST00000502773.5_1_4:157683422-157683533:-|nuORF ENST00000502773.5_1_4:157683422-157683533:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4014282226562 2 785.426845 1568.83914 NaN NaN NaN NaN NaN NaN NaN 90.033 1 86.174 85.674 86.674 -3.8595 0 0 0 0.22632 1 17615 17615 0.094841 0 1 24841 10633 16300 16306 24594 24594 0.07747025142316488 KYLNEGTH 8 Unmodified _KYLNEGTH_ 0 0 0 REV__ENSG00000196247|ENST00000620827|ZNF107 REV__ENSG00000196247|ENST00000620827|ZNF107 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2418212890625 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 93.382 1 89.238 88.738 89.738 -4.1435 0 0 0 0.23312 1 17799 17799 6.2058 6.0829 1 + 24842 19231 16301 16307 24595 24595 -0.015319761420073519 KYLRQWFIKTT 11 Unmodified _KYLRQWFIKTT_ 0 0 0 LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant;ENSG00000011376|ENST00000645846|LARS2 LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.39453125 2 742.424636 1482.83472 NaN NaN NaN NaN NaN NaN NaN 35.585 1 33.308 32.808 33.808 -2.2766 0 0 0 0.22632 1 6259 6259 0.00056442 0 1 24843 1076 16302 16308 24596 24596 0.11261560719390218 KYLYYRPRYKF 11 Unmodified _KYLYYRPRYKF_ 0 0 0 REV__ENSG00000029559|ENST00000226284|IBSP REV__ENSG00000029559|ENST00000226284|IBSP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2777709960938 3 532.961033 1595.86127 0.46781 0.00024933 0.57481 0.00030635 1.0426 0.00055568 533.295813453547 129.38 0.31412 124.56 124.44 124.75 -4.817 11 8 2 0 0 0 0.66298 1 24866 24866 0.094841 0.068635 1 1082400 + 24844 14011 16303 16309 24597 24597 0.08717249610708677 KYMNWLLN 8 Unmodified _KYMNWLLN_ 0 0 0 ENST00000342992.10_3_2:179485918-179486312:-|nuORF ENST00000342992.10_3_2:179485918-179486312:-|nuORF ENST00000342992.10_3_2:179485918-179486312:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2794189453125 2 541.278595 1080.54264 NaN NaN NaN NaN NaN NaN NaN 24.357 1 22.504 22.004 23.004 -1.8534 0 0 0 0.2396 1 3956 3956 0.0082765 0 1 24845 8869 16304 16310 24598 24598 0.0055870443377443735 KYNNNIIY 8 Unmodified _KYNNNIIY_ 0 0 0 ENST00000266659.7_2_12:75893342-75893732:+|nuORF ENST00000266659.7_2_12:75893342-75893732:+|nuORF ENST00000266659.7_2_12:75893342-75893732:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2805786132812 2 521.271824 1040.5291 0.20595 0.00010735 0.62031 0.00032335 0.82625 0.0004307 521.2720779900853 127.85 0.8009 127.85 127.44 128.24 0 46 22 3 0 0 0 0.40661 2 25237 25237;25258 32.117 1.8922 1 6112600 24846 8374 16305 16311 24599;24600 24599 0.010451699261921021 KYNSSFISH 9 Unmodified _KYNSSFISH_ 0 0 0 nc|ENSG00000198298|Q8NCK3-2|ZNF485;ENSG00000198298|ENST00000361807|ZNF485 nc|ENSG00000198298|Q8NCK3-2|ZNF485 nc|ENSG00000198298|Q8NCK3-2|ZNF485 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2842407226562 2 541.766906 1081.51926 0.247 0.00013382 0.6719 0.00036401 0.9189 0.00049783 541.7672281770685 61.323 0.47917 58.362 58.172 58.651 -2.9614 21 13 2 0 0 0 0.56623 1 11859 11859 34.402 2.0962 1 1193100 24847 7441 16306 16312 24601 24601 -0.018240180791963212 KYNWIKQWKLG 11 Unmodified _KYNWIKQWKLG_ 0 0 0 ENST00000508678.1_1_5:14681688-14687767:+|nuORF;ENSG00000154124|ENST00000284274|OTULIN ENST00000508678.1_1_5:14681688-14687767:+|nuORF ENST00000508678.1_1_5:14681688-14687767:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 489.2877197265625 3 488.610111 1462.8085 0.18747 9.16E-05 -0.28937 -0.00014139 -0.1019 -4.9791E-05 488.60995410471565 142.7 1.0441 142.7 142.37 143.41 0 83 29 4 0 0 0 0.54604 1 28522 28522 14.319 4.3029 1 14659000 24848 4994 16307 16313 24602 24602 0.09561291547925066 KYNWIKQWKLG 11 Unmodified _KYNWIKQWKLG_ 0 0 0 ENST00000508678.1_1_5:14681688-14687767:+|nuORF;ENSG00000154124|ENST00000284274|OTULIN ENST00000508678.1_1_5:14681688-14687767:+|nuORF ENST00000508678.1_1_5:14681688-14687767:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 488.610111 1462.8085 0.18747 9.16E-05 -0.28937 -0.00014139 -0.1019 -4.9791E-05 488.60995410471565 142.7 1.0441 142.7 142.37 143.41 0 0 0 NaN 14.319 83 29 4 NaN NaN NaN NaN 0 NaN NaN 0 14659000 24849 4994 16307 16313 0.09561291547925066 KYPRQKYVFLK 11 Unmodified _KYPRQKYVFLK_ 0 0 0 REV__ENST00000417037.6_2_3:38183656-38183971:+|nuORF REV__ENST00000417037.6_2_3:38183656-38183971:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2576904296875 3 490.625761 1468.85546 NaN NaN NaN NaN NaN NaN NaN 155.77 1 150.49 149.99 150.99 -5.2854 0 0 0 0.22632 1 30216 30216 0.50596 0 1 + 24850 21473 16308 16314 24603 24603 0.13978151099058778 KYQELLER 8 Unmodified _KYQELLER_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2115173339844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 75.521 1 71.798 71.298 72.298 -3.7227 0 0 0 0.21486 1 14286 14286 4.5289 0.58447 1 24851 6201 16309 16315 24604 24604 0.0461712798901317 KYQKRMKI 8 Unmodified _KYQKRMKI_ 0 0 0 ENSG00000124383|ENST00000244230|MPHOSPH10;MPHOSPH10|p.K581N|1|0.32|ENSG00000124383|chr2:71149300-71149300|G/T|missense_variant ENSG00000124383|ENST00000244230|MPHOSPH10 ENSG00000124383|ENST00000244230|MPHOSPH10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7825927734375 2 547.828786 1093.64302 NaN NaN NaN NaN NaN NaN NaN 153.07 1 153.07 152.57 153.57 0 0 0 0 0.23782 1 30664 30664 0.25148 0 1 24852 3313 16310 16316 24605 24605 0.0999436148742916 KYRKFKEYKKK 11 Unmodified _KYRKFKEYKKK_ 0 0 0 tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1 tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1 tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.2308044433594 4 387.237056 1544.91912 -1.9328 -0.00074846 -1.1265 -0.00043623 -3.0594 -0.0011847 387.2366849839341 17.573 0.17124 16.058 15.977 16.148 -1.5148 9 4 3 0 0 0 0.66298 1 2545 2545 0.094841 0 1 391760 24853 26154 16311 16317 24606 24606 0.1684551153614393 KYRKFKEYKKK 11 Unmodified _KYRKFKEYKKK_ 0 0 0 tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1 tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1 tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 387.237056 1544.91912 -0.18914 -7.3242E-05 -2.2559 -0.00087359 -2.4451 -0.00094683 387.2361669654892 15.989 0.20878 15.989 15.849 16.058 0 -0.059799 -0.00036787 NaN 0.094841 11 5 3 NaN NaN NaN NaN 0 NaN NaN 0 626760 24854 26154 16311 16317 0.1684551153614393 KYRKFKEYKKK 11 Unmodified _KYRKFKEYKKK_ 0 0 0 tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1 tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1 tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 387.237056 1544.91912 -0.44724 -0.00017319 -2.1081 -0.00081633 -2.5553 -0.00098952 387.2360680067787 17.409 0.21099 16.098 15.958 16.169 -1.3109 0.04994 -0.00013886 NaN 0.094841 12 5 3 NaN NaN NaN NaN 0 NaN NaN 0 549740 24855 26154 16311 16317 0.1684551153614393 KYRLKYLRLRK 11 Unmodified _KYRLKYLRLRK_ 0 0 0 ENSG00000154144|ENST00000441174|TBRG1;ENST00000473629.6_1_11:124492979-124496722:+|nuORF;ENST00000452080.5_1_11:124492979-124496602:+|nuORF;TBRG1|p.E142Rfs*53|1|0.3|ENSG00000154144|chr11:124625866-124625867|-/A|frameshift_variant;TBRG1|p.E197Rfs*29|1|0.13|ENSG00000154144|chr11:124626603-124626603|G/-|frameshift_variant ENSG00000154144|ENST00000441174|TBRG1 ENSG00000154144|ENST00000441174|TBRG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 768.9945678710938 2 768.996094 1535.97764 NaN NaN NaN NaN NaN NaN NaN 44.678 1 41.912 41.412 42.412 -2.7661 0 0 0 0.23698 1 8095 8095 0 0 1 24856 4997 16312 16318 24607 24607 0.2310861290129651 KYRLVSLSR 9 Unmodified _KYRLVSLSR_ 0 0 0 REV__ENST00000511015.1_1_5:462030-464560:+|nuORF REV__ENST00000511015.1_1_5:462030-464560:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.22119140625 3 374.564502 1120.67168 0.20907 7.8309E-05 -0.485 -0.00018167 -0.27594 -0.00010336 374.5643876504725 80.584 1.2288 80.584 80.039 81.268 0 83 34 4 0 0 0 0.58077 1 15610 15610 14.405 2.8875 1 11802000 + 24857 22544 16313 16319 24608 24608 0.11616802388221004 KYRRKQTYQLW 11 Unmodified _KYRRKQTYQLW_ 0 0 0 REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6929321289062 3 523.959803 1568.85758 -0.43797 -0.00022948 -0.67105 -0.00035161 -1.109 -0.00058109 524.2949838036168 142.23 0.20428 137.21 137.07 137.27 -5.0261 6 5 2 0 0 0 0.89074 1 27422 27422 1.4551 0 1 3020100 + 24858 19389 16314 16320 24609 24609 0.09590579836890356 KYRVGERWHPY 11 Unmodified _KYRVGERWHPY_ 0 0 0 nc|ENSG00000101938|Q9BU40-3|CHRDL1;nc|ENSG00000101938|Q9BU40|CHRDL1;nc|ENSG00000101938|Q9BU40-5|CHRDL1;ENSG00000101938|ENST00000372042|CHRDL1;CHRDL1|p.V343Cfs*16|1|0.34|ENSG00000101938|chrX:110681587-110681587|C/-|frameshift_variant nc|ENSG00000101938|Q9BU40-3|CHRDL1 nc|ENSG00000101938|Q9BU40-3|CHRDL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 497.7325134277344 3 497.593232 1489.75787 NaN NaN NaN NaN NaN NaN NaN 12.981 1 11.852 11.352 12.352 -1.1293 0 0 0 0.22632 1 1641 1641 0.50596 0.47975 1 24859 2098 16315 16321 24610 24610 0.03257762222938254 KYRVGERWHPY 11 Unmodified _KYRVGERWHPY_ 0 0 0 nc|ENSG00000101938|Q9BU40-3|CHRDL1;nc|ENSG00000101938|Q9BU40|CHRDL1;nc|ENSG00000101938|Q9BU40-5|CHRDL1;ENSG00000101938|ENST00000372042|CHRDL1;CHRDL1|p.V343Cfs*16|1|0.34|ENSG00000101938|chrX:110681587-110681587|C/-|frameshift_variant nc|ENSG00000101938|Q9BU40-3|CHRDL1 nc|ENSG00000101938|Q9BU40-3|CHRDL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 497.6123352050781 3 497.593232 1489.75787 NaN NaN NaN NaN NaN NaN NaN 14.114 1 12.941 12.441 13.441 -1.173 0 0 0 0.22632 1 1887 1887 0.50596 0.33396 1 24860 2098 16315 16321 24611 24611 0.03257762222938254 KYRVRKKF 8 Unmodified _KYRVRKKF_ 0 0 0 ENSG00000184302|ENST00000327720|SIX6;ENSG00000138083|ENST00000260653|SIX3 ENSG00000184302|ENST00000327720|SIX6 ENSG00000184302|ENST00000327720|SIX6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2163391113281 3 375.573221 1123.69783 -0.1107 -4.1577E-05 0.073581 2.7635E-05 -0.037122 -1.3942E-05 375.5731773635365 125.67 0.92348 121.07 120.68 121.61 -4.5984 60 25 3 0 0 0 8448 1 24715 24715 0.12286 0.11948 1 2448500 24861 4148 16316 16322 24612 24612 0.14093116350363744 KYTFCWMLEWY 11 Unmodified _KYTFCWMLEWY_ 0 0 0 REV__ENSG00000085831|ENST00000680483|TTC39A REV__ENSG00000085831|ENST00000680483|TTC39A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6972045898438 3 523.901686 1568.68323 NaN NaN NaN NaN NaN NaN NaN 119.75 1 115.28 114.78 115.78 -4.467 0 0 0 0.23634 1 23053 23053 1.3296 0.11481 1 + 24862 14478 16317 16323 24613 24613 -0.07836504694955693 KYTLETRPNQE 11 Unmodified _KYTLETRPNQE_ 0 0 0 ENST00000478361.6_1_10:94240585-94297282:-|nuORF;IDE|p.L569Ffs*9|2|0.33|ENSG00000119912|chr10:92483287-92483288|-/A|frameshift_variant;IDE|p.L569Cfs*45|3|0.41|ENSG00000119912|chr10:92483288-92483288|A/-|frameshift_variant;ENSG00000119912|ENST00000265986|IDE;IDE|p.I374Yfs*3|1|0.08|ENSG00000119912|chr10:92508146-92508147|-/A|frameshift_variant ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENST00000478361.6_1_10:94240585-94297282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2357177734375 3 460.236891 1377.68884 NaN NaN NaN NaN NaN NaN NaN 62.652 1 59.691 59.191 60.191 -2.9614 0 0 0 0.22632 1 12092 12092 0.03141 0 1 24863 3106 16318 16324 24614 24614 0.0151063341270401 KYVGSDLTP 9 Unmodified _KYVGSDLTP_ 0 0 0 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2585144042969 2 490.258382 978.502212 -0.12892 -6.3204E-05 0.94463 0.00046311 0.81571 0.00039991 490.2588079783634 63.751 0.45085 63.751 63.401 63.852 0 17 12 2 0 0 0 0.40602 1 12261 12261 25.399 3.8623 1 1786600 24864 82 16319 16325 24615 24615 0.012100613149868877 KYWKVELK 8 Unmodified _KYWKVELK_ 0 0 0 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7838134765625 2 547.32386 1092.63317 0.49721 0.00027214 0.09952 5.4469E-05 0.59673 0.00032661 547.8277300290207 157.74 0.21631 152.47 152.29 152.51 -5.2712 7 5 2 0 0 0 0.96386 1 30571 30571 10.074 4.777 1 780000 + 24865 19212 16320 16326 24616 24616 0.0905549675369457 KYYITEPKNY 10 Unmodified _KYYITEPKNY_ 0 0 0 REV__BRD7|p.H472Afs*14|1|0.32|ENSG00000166164|chr16:50323616-50323617|-/C|frameshift_variant REV__BRD7|p.H472Afs*14|1|0.32|ENSG00000166164|chr16:50323616-50323617|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 440.22882080078125 3 440.227444 1317.6605 NaN NaN NaN NaN NaN NaN NaN 27.466 1 25.543 25.043 26.043 -1.9222 0 0 0 0.22588 1 4595 4595 3.8763 1.2451 1 + 24866 13206 16321 16327 24617 24617 0.014379355034407126 LAAAAGAPAPL 11 Unmodified _LAAAAGAPAPL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.539306640625 2 461.77146 921.528367 NaN NaN NaN NaN NaN NaN NaN 115.5 1 110.95 110.45 111.45 -4.555 0 0 0 0.098853 1 22175 22175 36.044 1.9418 1 24867 3627 16322 16328 24618 24618 0.064463752771303 LAAAVLDLS 9 Unmodified _LAAAVLDLS_ 0 0 0 REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.217041015625 2 436.758018 871.501483 0.069377 3.0301E-05 -0.011677 -5.1001E-06 0.0577 2.5201E-05 436.75794206309115 122.84 1.0261 118.26 117.71 118.74 -4.5757 70 28 3 0 0 0 0.57821 1 24115 24115 14.582 0 1 21343000 + 24868 17751 16323 16329 24619 24619 0.060592666659431416 LAAGSHLQLLE 11 Unmodified _LAAGSHLQLLE_ 0 0 0 KLHL32|p.G405Afs*50|1|0.11|ENSG00000186231|chr6:97114365-97114365|G/-|frameshift_variant;nc|ENSG00000186231|Q96NJ5-2|KLHL32;ENSG00000186231|ENST00000369261|KLHL32 KLHL32|p.G405Afs*50|1|0.11|ENSG00000186231|chr6:97114365-97114365|G/-|frameshift_variant KLHL32|p.G405Afs*50|1|0.11|ENSG00000186231|chr6:97114365-97114365|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3121948242188 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 139.38 1 134.53 134.03 135.03 -4.8492 0 0 0 0.22595 1 26868 26868 11.495 1.4208 1 24869 7047 16324 16330 24620 24620 0.06533086051786086 LAAHGAPD 8 Unmodified _LAAHGAPD_ 0 0 0 nc|ENSG00000186480|O15503-2|INSIG1;ENSG00000186480|ENST00000340368|INSIG1 nc|ENSG00000186480|O15503-2|INSIG1 nc|ENSG00000186480|O15503-2|INSIG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.174072265625 2 376.190303 750.366053 NaN NaN NaN NaN NaN NaN NaN 31.592 1 29.566 29.066 30.066 -2.0264 0 0 0 0.23366 1 5458 5458 0.12286 0 1 24870 7061 16325 16331 24621 24621 -0.019115884050052045 LAAIWFRTY 9 Unmodified _LAAIWFRTY_ 0 0 0 ENST00000486484.5_1_2:9002434-9143743:-|nuORF;ENSG00000143797|ENST00000305997|MBOAT2;MBOAT2|p.C71Afs*20|1|0.14|ENSG00000143797|chr2:8958507-8958507|A/-|frameshift_variant;ENST00000460786.1_1_2:9048503-9098759:-|nuORF;MBOAT2|p.C71Lfs*52|2|0.18|ENSG00000143797|chr2:8958506-8958507|-/A|frameshift_variant ENST00000486484.5_1_2:9002434-9143743:-|nuORF ENST00000486484.5_1_2:9002434-9143743:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21221923828125 3 380.878198 1139.61277 -0.55139 -0.00021001 -0.064737 -2.4657E-05 -0.61613 -0.00023467 380.8781431820991 87.078 0.8767 83.349 82.872 83.749 -3.7289 54 24 3 0 0 0 0.5326 2 16645 16600;16645 1.2148 0 1 5994300 24871 4519 16326 16332 24622;24623 24623 0.04854326093891359 LAALLLIFG 9 Unmodified _LAALLLIFG_ 0 0 0 REV__ENSG00000165449|ENST00000395348|SLC16A9 REV__ENSG00000165449|ENST00000395348|SLC16A9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 466.24078369140625 2 465.804771 929.59499 -0.13944 -6.4954E-05 0.21128 9.8413E-05 0.071832 3.346E-05 465.80464657870243 69.267 0.35499 66.087 65.833 66.188 -3.1796 11 9 2 0 0 0 0.55732 1 13474 13474 0.40827 0 1 1142300 + 24872 17771 16327 16333 24624 24624 0.1273761083905356 LAALLLRRLL 10 Unmodified _LAALLLRRLL_ 0 0 0 REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32177734375 2 576.402976 1150.7914 NaN NaN NaN NaN NaN NaN NaN 164.59 1 159.55 159.05 160.05 -5.0446 0 0 0 2.8426 1 32112 32112 0.13989 0 1 + 24873 18358 16328 16334 24625 24625 0.22203415732792564 LAALVDLVP 9 Unmodified _LAALVDLVP_ 0 0 0 REV__ENSG00000135763|ENST00000258243|URB2 REV__ENSG00000135763|ENST00000258243|URB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 456.78594970703125 2 455.784036 909.553519 0.42302 0.0001928 -0.1052 -4.7948E-05 0.31782 0.00014486 455.7839105421382 160.69 1.4092 155.44 154.61 156.02 -5.2526 94 39 3 0 0 0 0.45972 1 31073 31073 1.2148 0 1 9217500 + 24874 16288 16329 16335 24626 24626 0.09512430079689693 LAAMCFPKV 9 Unmodified _LAAMCFPKV_ 0 0 0 ENST00000532086.1_1_16:3115767-3117689:+|nuORF;ENST00000532247.5_1_16:3115647-3117689:+|nuORF ENST00000532086.1_1_16:3115767-3117689:+|nuORF ENST00000532086.1_1_16:3115767-3117689:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2586364746094 2 490.258816 978.50308 0.091847 4.5029E-05 -0.66023 -0.00032368 -0.56838 -0.00027865 490.25849317703353 131.59 0.4525 126.95 126.79 127.24 -4.6368 18 12 2 0 0 0 0.44856 1 25900 25900 0.12781 0 1 1134900 24875 10977 16330 16336 24627 24627 0.01296861158698448 LAAMRAAA 8 Unmodified _LAAMRAAA_ 0 0 0 ENSG00000116017|ENST00000263620|ARID3A ENSG00000116017|ENST00000263620|ARID3A ENSG00000116017|ENST00000263620|ARID3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71624755859375 2 387.718173 773.421793 NaN NaN NaN NaN NaN NaN NaN 44.742 1 41.952 41.452 42.452 -2.79 0 0 0 0.23711 1 8413 8413 0.063987 0 1 24876 2901 16331 16337 24628 24628 0.02601921510961347 LAAPGPVAAVP 11 Unmodified _LAAPGPVAAVP_ 0 0 0 REV__ENSG00000268738|ENST00000598963|HSFX2 REV__ENSG00000268738|ENST00000598963|HSFX2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7862548828125 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 152.95 1 147.73 147.23 148.23 -5.2209 0 0 0 0.18742 1 29645 29645 21.747 4.8044 1 + 24877 18201 16332 16338 24629 24629 0.07734948311224343 LAASASALRP 10 Unmodified _LAASASALRP_ 0 0 0 ENST00000543571.5_1_6:150023399-150039140:-|nuORF ENST00000543571.5_1_6:150023399-150039140:-|nuORF ENST00000543571.5_1_6:150023399-150039140:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7228088378906 2 478.779816 955.545079 NaN NaN NaN NaN NaN NaN NaN 98.444 1 94.312 93.812 94.812 -4.1326 0 0 0 0.22544 1 19331 19331 19.257 0 1 24878 11102 16333 16339 24630 24630 0.06552876163073051 LAASKAPPP 9 Unmodified _LAASKAPPP_ 0 0 0 REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.24432373046875 2 426.252903 850.491253 -0.1095 -4.6673E-05 0.16167 6.8912E-05 0.052173 2.2239E-05 426.25296282422084 96.91 1.0068 92.812 92.247 93.254 -4.0978 77 28 3 0 0 0 0.49624 1 19088 19088 0.87518 0.24835 1 15137000 + 24879 20996 16334 16340 24631 24631 0.06002703731371639 LAASKAPPP 9 Unmodified _LAASKAPPP_ 0 0 0 REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 426.252903 850.491253 -0.11261 -4.8002E-05 0.22066 9.4059E-05 0.10805 4.6057E-05 426.2529582044851 92.888 0.95828 92.888 92.301 93.259 0 0.02616 3.2372E-05 NaN 0.87518 67 27 3 NaN NaN NaN NaN 0 NaN NaN 0 10755000 + 24880 20996 16334 16340 0.06002703731371639 LAASKAPPP 9 Unmodified _LAASKAPPP_ 0 0 0 REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 426.252903 850.491253 -0.1095 -4.6673E-05 0.16167 6.8912E-05 0.052173 2.2239E-05 426.25296282422084 96.91 1.0068 92.812 92.247 93.254 -4.0978 -0.049876 -1.7922E-05 NaN 0.87518 77 28 3 NaN NaN NaN NaN 0 NaN NaN 0 15137000 + 24881 20996 16334 16340 0.06002703731371639 LAASKAPPP 9 Unmodified _LAASKAPPP_ 0 0 0 REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 426.252903 850.491253 0.1111 4.7356E-05 -0.022572 -9.6215E-06 0.088526 3.7734E-05 426.25288082894235 97.11 1.0195 92.875 92.338 93.358 -4.2348 0.013079 -0.00017499 NaN 0.87518 75 29 3 NaN NaN NaN NaN 0 NaN NaN 0 13829000 + 24882 20996 16334 16340 0.06002703731371639 LAASKAPPP 9 Unmodified _LAASKAPPP_ 0 0 0 REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 426.252903 850.491253 -0.30546 -0.0001302 0.41819 0.00017826 0.11273 4.8052E-05 426.2530649218107 96.792 1.039 92.873 92.36 93.398 -3.9194 0.010637 0.00020077 NaN 0.87518 83 29 4 NaN NaN NaN NaN 0 NaN NaN 0 13857000 + 24883 20996 16334 16340 0.06002703731371639 LAAVGAAY 8 Unmodified _LAAVGAAY_ 0 0 0 ENSG00000168140|ENST00000304735|VASN ENSG00000168140|ENST00000304735|VASN ENSG00000168140|ENST00000304735|VASN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.87603759765625 2 368.205421 734.39629 NaN NaN NaN NaN NaN NaN NaN 88.608 1 84.815 84.315 85.315 -3.7926 0 0 0 0.23294 1 17336 17336 0.62683 0 1 24884 5884 16335 16341 24632 24632 0.018467702601810743 LAAVRLKEAV 10 Unmodified _LAAVRLKEAV_ 0 0 0 REV__ENSG00000244165|ENST00000321826|P2RY11 REV__ENSG00000244165|ENST00000321826|P2RY11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5635986328125 3 357.229119 1068.66553 -0.3662 -0.00013082 0.21234 7.5855E-05 -0.15386 -5.4963E-05 357.2291410594959 74.842 0.58881 71.248 70.884 71.473 -3.594 27 16 2 0 0 0 0.72703 1 14193 14193 8.4443 3.0416 1 1133000 + 24885 19809 16336 16342 24633 24633 0.13394284156697722 LAAVTAEHRLA 11 Unmodified _LAAVTAEHRLA_ 0 0 0 REV__ENSG00000078814|ENST00000262873|MYH7B REV__ENSG00000078814|ENST00000262873|MYH7B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3309936523438 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 128.42 1 123.79 123.29 124.29 -4.6292 0 0 0 0.22632 1 25319 25319 1.4551 0.49284 1 + 24886 14388 16337 16343 24634 24634 0.0765590814596635 LACKKPKK 8 Unmodified _LACKKPKK_ 0 0 0 ENST00000408005.2_1_7:11415423-11419358:-|nuORF;ENSG00000005108|ENST00000423059|THSD7A ENST00000408005.2_1_7:11415423-11419358:-|nuORF ENST00000408005.2_1_7:11415423-11419358:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2933349609375 2 458.294048 914.573543 NaN NaN NaN NaN NaN NaN NaN 140.3 1 135.66 135.16 136.16 -4.6439 0 0 0 0.2343 1 27702 27702 0.62683 0.56284 1 24887 984 16338 16344 24635 24635 0.11283902538673374 LACMEQGNLCY 11 Unmodified _LACMEQGNLCY_ 0 0 0 REV__CRIM1|p.R635Q|1|0.27|ENSG00000150938|chr2:36513679-36513679|G/A|missense_variant REV__CRIM1|p.R635Q|1|0.27|ENSG00000150938|chr2:36513679-36513679|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.765380859375 2 622.759052 1243.50355 0.4044 0.00025185 -1.2729 -0.00079271 -0.8685 -0.00054087 623.2580694937652 157.34 0.20816 152.06 151.94 152.14 -5.2854 6 5 2 0 0 0 0.71361 1 30528 30528 10.824 2.0785 1 729910 + 24888 13584 16339 16345 24636 24636 -0.10846131974403761 LACPPVLLH 9 Unmodified _LACPPVLLH_ 0 0 0 ENST00000372017.3_1_10:88722816-88722948:+|nuORF ENST00000372017.3_1_10:88722816-88722948:+|nuORF ENST00000372017.3_1_10:88722816-88722948:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7754821777344 2 481.778231 961.541908 0.10098 4.8648E-05 -3.1095 -0.0014981 -3.0086 -0.0014495 481.7778172733818 142.72 0.1011 138.07 138 138.1 -4.656 4 2 2 0 0 0 0.53429 1 28216 28216 0.40827 0.34428 1 408770 24889 9171 16340 16346 24637 24637 0.05959909784735373 LACPPVLLH 9 Unmodified _LACPPVLLH_ 0 0 0 ENST00000372017.3_1_10:88722816-88722948:+|nuORF ENST00000372017.3_1_10:88722816-88722948:+|nuORF ENST00000372017.3_1_10:88722816-88722948:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7791748046875 2 481.778231 961.541908 NaN NaN NaN NaN NaN NaN NaN 141.12 1 136.25 135.75 136.75 -4.8678 0 0 0 0.1966 1 27227 27227 0.40827 0.2854 1 24890 9171 16340 16346 24638 24638 0.05959909784735373 LACQRGGG 8 Unmodified _LACQRGGG_ 0 0 0 ENST00000216780.8_1_14:24563387-24566117:+|nuORF ENST00000216780.8_1_14:24563387-24566117:+|nuORF ENST00000216780.8_1_14:24563387-24566117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21673583984375 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 57.501 1 57.501 57.001 58.001 0 0 0 0 0.23749 1 10994 10994 0.0082765 0 1 24891 8120 16341 16347 24639 24639 -0.024761260455420597 LADELINAA 9 Unmodified _LADELINAA_ 0 0 0 ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58905872-58905992:+|nuORF ENSG00000083845|ENST00000196551|RPS5 ENSG00000083845|ENST00000196551|RPS5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2481689453125 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 93.071 1 89.227 88.727 89.727 -3.844 0 0 0 0.23411 1 17841 17841 13.508 3.3245 1 24892 1658 16342 16348 24640 24640 0.019457747979458873 LADELQKI 8 Unmodified _LADELQKI_ 0 0 0 REV__nc|ENSG00000137831|Q9BZF9-2|UACA REV__nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2502746582031 2 465.26875 928.522947 0.088472 4.1163E-05 -0.049823 -2.3181E-05 0.038649 1.7982E-05 465.2686344857421 98.2 0.8822 94.244 93.749 94.631 -3.9564 55 25 3 0 0 0 0.40661 2 18760 18752;18760 32.117 5.2333 1 3018400 + 24893 16417 16343 16349 24641;24642 24642 0.055826516946467564 LADETLLKV 9 Unmodified _LADETLLKV_ 0 0 0 ENST00000504788.5_1_5:126112928-126171953:+|nuORF;ENSG00000113368|ENST00000261366|LMNB1 ENST00000504788.5_1_5:126112928-126171953:+|nuORF ENST00000504788.5_1_5:126112928-126171953:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 501.2755432128906 2 501.297507 1000.58046 0.18968 9.5088E-05 -0.0040492 -2.0298E-06 0.18564 9.3059E-05 501.2974373503091 121.71 0.72549 117.18 116.71 117.44 -4.5305 29 19 2 0 0 0 0.15889 1 23395 23395 22.736 21.671 1 1298700 24894 2739 16344 16350 24643 24643 0.08019493900246744 LADETLLKV 9 Unmodified _LADETLLKV_ 0 0 0 ENST00000504788.5_1_5:126112928-126171953:+|nuORF;ENSG00000113368|ENST00000261366|LMNB1 ENST00000504788.5_1_5:126112928-126171953:+|nuORF ENST00000504788.5_1_5:126112928-126171953:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 501.297507 1000.58046 0.22589 0.00011324 -0.14034 -7.0355E-05 0.085547 4.2885E-05 501.297403185242 121.64 0.78101 117.09 116.64 117.42 -4.5476 -0.034013 -4.8739E-05 NaN 22.736 25 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1487800 24895 2739 16344 16350 0.08019493900246744 LADETLLKV 9 Unmodified _LADETLLKV_ 0 0 0 ENST00000504788.5_1_5:126112928-126171953:+|nuORF;ENSG00000113368|ENST00000261366|LMNB1 ENST00000504788.5_1_5:126112928-126171953:+|nuORF ENST00000504788.5_1_5:126112928-126171953:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 501.297507 1000.58046 0.36536 0.00018315 -0.15901 -7.9711E-05 0.20635 0.00010344 501.29745589290354 121.8 0.70676 117.11 116.77 117.48 -4.6873 -0.020146 -6.7452E-05 NaN 22.736 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1240200 24896 2739 16344 16350 0.08019493900246744 LADHLAPH 8 Unmodified _LADHLAPH_ 0 0 0 REV__nc|ENSG00000122435|Q9NUP7-2|TRMT13 REV__nc|ENSG00000122435|Q9NUP7-2|TRMT13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2342529296875 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 159.53 1 154.26 153.76 154.76 -5.2748 0 0 0 0.21486 1 30964 30964 5.7604 0 1 + 24897 15689 16345 16351 24644 24644 0.009123624117592044 LADIDLLA 8 Unmodified _LADIDLLA_ 0 0 0 REV__PCDHGA12|p.R635I|1|0.35|ENSG00000253159|chr5:141432663-141432663|G/T|missense_variant REV__PCDHGA12|p.R635I|1|0.35|ENSG00000253159|chr5:141432663-141432663|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4132690429688 1 843.482211 842.474934 0.39204 0.00033068 -0.031825 -2.6844E-05 0.36022 0.00030384 843.4821744835796 155.23 0.97375 149.95 149.53 150.51 -5.2854 45 26 2 0 0 0 0.13334 1 30157 30157 56.541 2.9657 1 9418200 + 24898 24446 16346 16352 24645 24645 0.04739577774626014 LADIDLLA 8 Unmodified _LADIDLLA_ 0 0 0 REV__PCDHGA12|p.R635I|1|0.35|ENSG00000253159|chr5:141432663-141432663|G/T|missense_variant REV__PCDHGA12|p.R635I|1|0.35|ENSG00000253159|chr5:141432663-141432663|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 843.482211 842.474934 0.51795 0.00043688 -0.38048 -0.00032093 0.13747 0.00011595 843.4818471481751 154.62 0.87434 149.84 149.42 150.3 -4.7791 -0.049208 -0.00016927 NaN 56.541 47 24 2 NaN NaN NaN NaN 0 NaN NaN 0 9316200 + 24899 24446 16346 16352 0.04739577774626014 LADKGAENLL 10 Unmodified _LADKGAENLL_ 0 0 0 REV__ENSG00000113494|ENST00000618457|PRLR REV__ENSG00000113494|ENST00000618457|PRLR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2814331054688 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 143.94 1 143.94 143.44 144.44 0 0 0 0 0.22583 1 28743 28743 13.906 3.0821 1 + 24900 15345 16347 16353 24646 24646 0.04629421752088092 LADLLVRRA 9 Unmodified _LADLLVRRA_ 0 0 0 REV__ENST00000255641.12_1_19:1980781-1981270:+|nuORF REV__ENST00000255641.12_1_19:1980781-1981270:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.1868591308594 3 342.885464 1025.63456 -0.4636 -0.00015896 0.26868 9.2127E-05 -0.19492 -6.6836E-05 342.8855377009826 88.456 0.56337 88.456 88.19 88.754 0 34 15 3 0 0 0 0.78323 1 17241 17241 2.4985 0 1 5590300 + 24901 20129 16348 16354 24647 24647 0.12277130842471706 LADLVSVI 8 Unmodified _LADLVSVI_ 0 0 0 REV__ENSG00000170920|ENST00000305444|OR7G3 REV__ENSG00000170920|ENST00000305444|OR7G3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.2531433105469 2 415.255111 828.49567 NaN NaN NaN NaN NaN NaN NaN 81.628 1 78.071 77.571 78.571 -3.557 0 0 0 0.21486 1 15945 15945 10.183 0 1 + 24902 18191 16349 16355 24648 24648 0.07456168154271836 LADPASLSV 9 Unmodified _LADPASLSV_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2162170410156 2 436.739825 871.465098 0.15021 6.5602E-05 -0.12887 -5.6283E-05 0.021339 9.3195E-06 436.7396986461284 115.95 0.86885 115.95 115.49 116.36 0 42 24 2 0 0 0 0.023387 3 22821 22759;22821;22872 88.904 0 1 4843400 + 24903 16401 16350 16356 24649;24650;24651 24650 0.024223897692309038 LADPASLSV 9 Unmodified _LADPASLSV_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21649169921875 2 436.739825 871.465098 0.13585 5.9331E-05 -0.17744 -7.7494E-05 -0.041588 -1.8163E-05 436.7397158361656 120.38 0.76719 115.86 115.5 116.27 -4.5221 50 21 3 0 0 0 0.035225 1 23722 23722 88.904 0 1 8157500 + 24904 16401 16350 16356 24652 24652 0.024223897692309038 LADPASLSV 9 Unmodified _LADPASLSV_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2169494628906 2 436.739825 871.465098 0.58855 0.00025705 -0.55828 -0.00024382 0.03027 1.322E-05 436.7395346835271 120.58 0.83147 115.94 115.49 116.32 -4.645 52 23 3 0 0 0 0.023387 3 23159 23159;23168;23201 88.904 3.6275 1 6308200 + 24905 16401 16350 16356 24653;24654;24655 24653 0.024223897692309038 LADPASLSV 9 Unmodified _LADPASLSV_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2167663574219 2 436.739825 871.465098 0.18733 8.1815E-05 -0.15627 -6.8247E-05 0.031067 1.3568E-05 436.7397495968593 120.4 0.83633 115.94 115.48 116.31 -4.467 53 23 3 0 0 0 0.029966 1 23200 23200 96.285 0 1 6035000 + 24906 16401 16350 16356 24656 24656 0.024223897692309038 LADPASLSV 9 Unmodified _LADPASLSV_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 436.739825 871.465098 0.15021 6.5602E-05 -0.12887 -5.6283E-05 0.021339 9.3195E-06 436.7396986461284 115.95 0.86885 115.95 115.49 116.36 0 0.02779 0.00011575 NaN 88.904 42 24 2 NaN NaN NaN NaN 0 NaN NaN 0 4843400 + 24907 16401 16350 16356 0.024223897692309038 LADPGPVNF 9 Unmodified _LADPGPVNF_ 0 0 0 nc|ENSG00000181704|Q96EC8-2|YIPF6;ENSG00000181704|ENST00000462683|YIPF6 nc|ENSG00000181704|Q96EC8-2|YIPF6 nc|ENSG00000181704|Q96EC8-2|YIPF6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2396545410156 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 113.24 1 113.24 112.74 113.74 0 0 0 0 0.091359 1 22264 22264 39.957 26.449 1 24908 6736 16351 16357 24657 24657 -0.0016619051091311121 LADPGPVNF 9 Unmodified _LADPGPVNF_ 0 0 0 nc|ENSG00000181704|Q96EC8-2|YIPF6;ENSG00000181704|ENST00000462683|YIPF6 nc|ENSG00000181704|Q96EC8-2|YIPF6 nc|ENSG00000181704|Q96EC8-2|YIPF6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2398681640625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 113.49 1 113.49 112.99 113.99 0 0 0 0 0.091359 1 22314 22314 39.957 26.449 1 24909 6736 16351 16357 24658 24658 -0.0016619051091311121 LADPGPVNF 9 Unmodified _LADPGPVNF_ 0 0 0 nc|ENSG00000181704|Q96EC8-2|YIPF6;ENSG00000181704|ENST00000462683|YIPF6 nc|ENSG00000181704|Q96EC8-2|YIPF6 nc|ENSG00000181704|Q96EC8-2|YIPF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2402038574219 2 465.239993 928.465432 0.14839 6.9039E-05 0.23372 0.00010873 0.38211 0.00017777 465.2397844051371 118.06 0.4827 113.56 113.28 113.77 -4.502 18 13 2 0 0 0 0.11032 2 23239 23239;23295 52.268 29.12 1 1369400 24910 6736 16351 16357 24659;24660 24659 -0.0016619051091311121 LADPGPVNF 9 Unmodified _LADPGPVNF_ 0 0 0 nc|ENSG00000181704|Q96EC8-2|YIPF6;ENSG00000181704|ENST00000462683|YIPF6 nc|ENSG00000181704|Q96EC8-2|YIPF6 nc|ENSG00000181704|Q96EC8-2|YIPF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.239990234375 2 465.239993 928.465432 0.40276 0.00018738 0.067802 3.1544E-05 0.47056 0.00021892 465.23984836053586 118.2 0.49813 113.59 113.24 113.74 -4.6106 19 13 2 0 0 0 0.081765 1 22663 22663 61.357 29.052 1 1054600 24911 6736 16351 16357 24661 24661 -0.0016619051091311121 LADPGPVNF 9 Unmodified _LADPGPVNF_ 0 0 0 nc|ENSG00000181704|Q96EC8-2|YIPF6;ENSG00000181704|ENST00000462683|YIPF6 nc|ENSG00000181704|Q96EC8-2|YIPF6 nc|ENSG00000181704|Q96EC8-2|YIPF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2402038574219 2 465.239993 928.465432 0.44141 0.00020536 -0.66136 -0.00030769 -0.21995 -0.00010233 465.2397813213642 117.87 0.46487 113.46 113.21 113.68 -4.4088 19 12 2 0 0 0 0.15214 1 22678 22678 43.858 20.71 1 740680 24912 6736 16351 16357 24662 24662 -0.0016619051091311121 LADPSPCFL 9 Unmodified _LADPSPCFL_ 0 0 0 REV__ENST00000533210.5_1_8:144650405-144650852:-|nuORF REV__ENST00000533210.5_1_8:144650405-144650852:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7774658203125 2 481.736228 961.457904 NaN NaN NaN NaN NaN NaN NaN 146.12 1 141.44 140.94 141.94 -4.6868 0 0 0 0.15147 1 28976 28976 30.225 5.5509 1 + 24913 22794 16352 16358 24663 24663 -0.02436666102835261 LADSDARALY 10 Unmodified _LADSDARALY_ 0 0 0 ENST00000489109.1_1_9:75775238-75780181:+|nuORF;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1 ENST00000489109.1_1_9:75775238-75780181:+|nuORF ENST00000489109.1_1_9:75775238-75780181:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7775268554688 2 547.77747 1093.54039 0.00068908 3.7746E-07 0.17889 9.7991E-05 0.17958 9.8369E-05 547.7775337660933 66.58 0.62882 66.58 66.239 66.868 0 38 17 3 0 0 0 0.046341 2 12840 12840;12887 75.571 66.658 1 9686600 24914 3894 16353 16359 24664;24665 24664 -0.0026405277033063612 LADSDARALY 10 Unmodified _LADSDARALY_ 0 0 0 ENST00000489109.1_1_9:75775238-75780181:+|nuORF;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1 ENST00000489109.1_1_9:75775238-75780181:+|nuORF ENST00000489109.1_1_9:75775238-75780181:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7777099609375 2 547.77747 1093.54039 0.092159 5.0483E-05 0.1352 7.406E-05 0.22736 0.00012454 547.7775548352068 69.882 0.7386 66.703 66.368 67.107 -3.1796 48 20 3 0 0 0 0.04536 5 13586 13542;13586;13588;13641;13663 84.522 59.641 1 9208900 24915 3894 16353 16359 24666;24667;24668;24669;24670 24667 -0.0026405277033063612 LADSDARALY 10 Unmodified _LADSDARALY_ 0 0 0 ENST00000489109.1_1_9:75775238-75780181:+|nuORF;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1 ENST00000489109.1_1_9:75775238-75780181:+|nuORF ENST00000489109.1_1_9:75775238-75780181:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7665405273438 2 547.77747 1093.54039 0.40679 0.00022283 -0.29825 -0.00016337 0.10854 5.9456E-05 547.7773568447993 70.272 0.67028 66.692 66.381 67.052 -3.5798 47 18 4 0 0 0 0.11758 3 13272 13202;13272;13294 55.235 24.598 1 8063600 24916 3894 16353 16359 24671;24672;24673 24672 -0.0026405277033063612 LADSDARALY 10 Unmodified _LADSDARALY_ 0 0 0 ENST00000489109.1_1_9:75775238-75780181:+|nuORF;ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1 ENST00000489109.1_1_9:75775238-75780181:+|nuORF ENST00000489109.1_1_9:75775238-75780181:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7772827148438 2 547.77747 1093.54039 0.4203 0.00023023 -0.23318 -0.00012773 0.18712 0.0001025 547.7772174141295 70.18 0.73347 66.713 66.289 67.023 -3.467 51 20 3 0 0 0 0.097483 2 13314 13263;13314 61.09 30.865 1 7370200 24917 3894 16353 16359 24674;24675 24675 -0.0026405277033063612 LADSIFPSL 9 Unmodified _LADSIFPSL_ 0 0 0 REV__nc|ENSG00000034533|Q2TB18-2|ASTE1 REV__nc|ENSG00000034533|Q2TB18-2|ASTE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2369079589844 2 481.7633 961.512048 0.21879 0.0001054 -0.12189 -5.8723E-05 0.096897 4.6682E-05 481.7632051597633 100.23 0.54372 96.238 95.937 96.48 -3.9895 26 15 2 0 0 0 0.65155 1 19256 19256 28.487 6.7402 1 3339300 + 24918 14025 16354 16360 24676 24676 0.029752493203773156 LADSTRGLP 9 Unmodified _LADSTRGLP_ 0 0 0 KCTD12|p.G14Afs*25|1|0.13|ENSG00000178695|chr13:76886108-76886108|C/-|frameshift_variant;ENSG00000178695|ENST00000377474|KCTD12 KCTD12|p.G14Afs*25|1|0.13|ENSG00000178695|chr13:76886108-76886108|C/-|frameshift_variant KCTD12|p.G14Afs*25|1|0.13|ENSG00000178695|chr13:76886108-76886108|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2563781738281 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 153.14 1 148.38 147.88 148.88 -4.7684 0 0 0 0.23508 1 30433 30433 5.2307 0 1 24919 6589 16355 16361 24677 24677 0.03068596892092046 LADTESHLSL 10 Unmodified _LADTESHLSL_ 0 0 0 ENST00000497401.1_1_22:18049955-18062711:+|nuORF ENST00000497401.1_1_22:18049955-18062711:+|nuORF ENST00000497401.1_1_22:18049955-18062711:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7955932617188 2 543.277303 1084.54005 0.58696 0.00031888 -0.9377 -0.00050943 -0.35074 -0.00019055 543.7788387939067 115.94 0.31557 111.58 111.28 111.6 -4.3585 15 8 3 0 0 0 0.83242 1 22311 22311 10.074 0 1 1343400 24920 10589 16356 16362 24678 24678 0.0011652750984012528 LADTQKSTP 9 Unmodified _LADTQKSTP_ 0 0 0 REV__ENST00000303391.10_2_X:153294741-153294930:-|nuORF REV__ENST00000303391.10_2_X:153294741-153294930:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2532653808594 2 480.753464 959.492375 0.047521 2.2846E-05 0.44809 0.00021542 0.49561 0.00023826 480.7539474191819 94.228 0.27752 90.237 90.071 90.348 -3.9907 11 7 2 0 0 0 0.38188 1 18457 18457 26.884 0.61551 1 500390 + 24921 20421 16357 16363 24679 24679 0.011008733096218748 LADTQLHY 8 Unmodified _LADTQLHY_ 0 0 0 PNMA5|p.V73Qfs*24|1|0.04|ENSG00000198883|chrX:152991381-152991382|AC/-|frameshift_variant PNMA5|p.V73Qfs*24|1|0.04|ENSG00000198883|chrX:152991381-152991382|AC/-|frameshift_variant PNMA5|p.V73Qfs*24|1|0.04|ENSG00000198883|chrX:152991381-152991382|AC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2450866699219 2 480.742899 959.471246 -0.053901 -2.5912E-05 1.0718 0.00051526 1.0179 0.00048935 480.74313459626677 69.539 0.67479 66.36 66.046 66.72 -3.1796 44 18 3 0 0 0 0.12867 1 13523 13523 57.471 21.344 1 3613900 24922 12807 16358 16364 24680 24680 -0.010110919992484924 LADTQLHY 8 Unmodified _LADTQLHY_ 0 0 0 PNMA5|p.V73Qfs*24|1|0.04|ENSG00000198883|chrX:152991381-152991382|AC/-|frameshift_variant PNMA5|p.V73Qfs*24|1|0.04|ENSG00000198883|chrX:152991381-152991382|AC/-|frameshift_variant PNMA5|p.V73Qfs*24|1|0.04|ENSG00000198883|chrX:152991381-152991382|AC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24468994140625 2 480.742899 959.471246 0.28583 0.00013741 0.16285 7.8289E-05 0.44868 0.0002157 480.74270270889184 69.837 0.73385 66.382 66.126 66.86 -3.4548 45 20 3 0 0 0 0.12867 1 13233 13233 57.471 13.613 1 2889800 24923 12807 16358 16364 24681 24681 -0.010110919992484924 LADTVRLAA 9 Unmodified _LADTVRLAA_ 0 0 0 ENST00000263754.4_1_3:20081555-20081600:+|nuORF ENST00000263754.4_1_3:20081555-20081600:+|nuORF ENST00000263754.4_1_3:20081555-20081600:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2389221191406 2 465.274367 928.53418 0.31757 0.00014776 0.22414 0.00010429 0.54171 0.00025204 465.2744636138512 100.47 0.64896 96.482 96.069 96.718 -3.9895 26 18 2 0 0 0 0.58804 1 19247 19247 13.906 2.2658 1 1120700 24924 8328 16359 16365 24682 24682 0.06705473788792915 LADTVRLAA 9 Unmodified _LADTVRLAA_ 0 0 0 ENST00000263754.4_1_3:20081555-20081600:+|nuORF ENST00000263754.4_1_3:20081555-20081600:+|nuORF ENST00000263754.4_1_3:20081555-20081600:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.274367 928.53418 0.11114 5.1712E-05 -0.23522 -0.00010944 -0.12408 -5.7731E-05 465.27412481590835 96.798 0.41776 96.798 96.528 96.945 0 0.15831 -0.00015649 NaN 13.906 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1076100 24925 8328 16359 16365 0.06705473788792915 LADWPWAG 8 Unmodified _LADWPWAG_ 0 0 0 ENST00000482556.5_1_20:47242047-47242404:-|nuORF ENST00000482556.5_1_20:47242047-47242404:-|nuORF ENST00000482556.5_1_20:47242047-47242404:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2223205566406 2 458.221603 914.428653 NaN NaN NaN NaN NaN NaN NaN 54.596 1 51.46 50.96 51.96 -3.1352 0 0 0 0.21181 1 10077 10077 15.768 5.6943 1 24926 10399 16360 16366 24683 24683 -0.03198442336815788 LADYFHTL 8 Unmodified _LADYFHTL_ 0 0 0 REV__F13A1|p.P290Hfs*72|1|0.45|ENSG00000124491|chr6:6224790-6224790|G/-|frameshift_variant REV__F13A1|p.P290Hfs*72|1|0.45|ENSG00000124491|chr6:6224790-6224790|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2627258300781 2 490.247818 978.481082 NaN NaN NaN NaN NaN NaN NaN 157.99 1 157.99 157.49 158.49 0 0 0 0 0.22625 1 31719 31719 2.643 0 1 + 24927 23510 16361 16367 24684 24684 -0.00901903993860742 LAEFPEALA 9 Unmodified _LAEFPEALA_ 0 0 0 nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179;GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant;GPR179|p.K1289Rfs*12|1|0.29|ENSG00000277399|chr17:38329703-38329703|T/-|frameshift_variant;GPR179|p.R1290Efs*59|1|0.25|ENSG00000277399|chr17:38329702-38329703|-/T|frameshift_variant nc|ENSG00000277399|Q6PRD1|GPR179 nc|ENSG00000277399|Q6PRD1|GPR179 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25457763671875 2 480.755475 959.496398 0.015367 7.3879E-06 0.2603 0.00012514 0.27567 0.00013253 480.755824505521 97.863 1.4706 93.943 93.433 94.903 -3.9194 67 42 2 0 0 0 0.55979 1 18877 18877 15.847 0 1 2528900 24928 8036 16362 16368 24685 24685 0.015029628033289555 LAEGAEVP 8 Unmodified _LAEGAEVP_ 0 0 0 REV__ENST00000219169.8_1_16:67905422-67905869:+|nuORF REV__ENST00000219169.8_1_16:67905422-67905869:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4029541015625 1 785.40396 784.396684 0.43366 0.0003406 0.44299 0.00034793 0.87665 0.00068852 785.403565846247 72.615 0.10898 72.615 72.539 72.648 0 4 2 2 0 0 0 8448 1 14088 14088 15.478 3.4794 1 1183100 + 24929 20027 16363 16369 24686 24686 -0.004138548106084272 LAEGVQLAA 9 Unmodified _LAEGVQLAA_ 0 0 0 REV__nc|ENSG00000140463|Q96RK4-3|BBS4 REV__nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21539306640625 2 436.247818 870.481082 0.36038 0.00015721 -0.39858 -0.00017388 -0.038203 -1.6666E-05 436.2475887799263 117.6 0.52471 112.99 112.72 113.24 -4.6106 22 14 3 0 0 0 0.67531 1 22585 22585 7.9102 0 1 900880 + 24930 13182 16364 16370 24687 24687 0.04066096006135922 LAEGVQLAA 9 Unmodified _LAEGVQLAA_ 0 0 0 REV__nc|ENSG00000140463|Q96RK4-3|BBS4 REV__nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 436.247818 870.481082 0.14453 6.3052E-05 -0.16656 -7.2663E-05 -0.022031 -9.6111E-06 436.24767638381377 113.15 0.47834 113.15 112.83 113.31 0 0.10049 9.4681E-05 NaN 7.9102 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 961350 + 24931 13182 16364 16370 0.04066096006135922 LAEGVQLAA 9 Unmodified _LAEGVQLAA_ 0 0 0 REV__nc|ENSG00000140463|Q96RK4-3|BBS4 REV__nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 436.247818 870.481082 0.36038 0.00015721 -0.39858 -0.00017388 -0.038203 -1.6666E-05 436.2475887799263 117.6 0.52471 112.99 112.72 113.24 -4.6106 -0.054847 -0.00010775 NaN 7.9102 22 14 3 NaN NaN NaN NaN 0 NaN NaN 0 900880 + 24932 13182 16364 16370 0.04066096006135922 LAEGVQLAA 9 Unmodified _LAEGVQLAA_ 0 0 0 REV__nc|ENSG00000140463|Q96RK4-3|BBS4 REV__nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 436.247818 870.481082 0.2732 0.00011918 -0.23413 -0.00010214 0.03907 1.7044E-05 436.2475182140451 117.36 0.64111 113 112.73 113.37 -4.3585 -0.04564 3.5731E-05 NaN 7.9102 31 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1246400 + 24933 13182 16364 16370 0.04066096006135922 LAEKDDIKY 9 Unmodified _LAEKDDIKY_ 0 0 0 nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216 nc|ENSG00000011275|Q9NWF9|RNF216 nc|ENSG00000011275|Q9NWF9|RNF216 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7926025390625 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 26.194 1 24.412 23.912 24.912 -1.7821 0 0 0 0.23508 1 4616 4616 7.9102 0.62092 1 24934 1073 16365 16371 24688 24688 0.022500020322468117 LAEKFGQVS 9 Unmodified _LAEKFGQVS_ 0 0 0 REV__ENSG00000068745|ENST00000328631|IP6K2 REV__ENSG00000068745|ENST00000328631|IP6K2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2676696777344 2 489.766374 977.518196 -0.21613 -0.00010585 0.086521 4.2375E-05 -0.12961 -6.3479E-05 489.76662101180386 110.85 0.34438 106.43 106.27 106.61 -4.4231 12 9 2 0 0 0 0.40602 1 21839 21839 25.399 3.6527 1 548630 + 24935 14232 16366 16372 24689 24689 0.028537675519146433 LAEKFGQVS 9 Unmodified _LAEKFGQVS_ 0 0 0 REV__ENSG00000068745|ENST00000328631|IP6K2 REV__ENSG00000068745|ENST00000328631|IP6K2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.766374 977.518196 0.40239 0.00019708 -2.2516 -0.0011027 -1.8492 -0.00090567 489.7672472793457 106.63 0.3595 106.63 106.54 106.9 0 0.098239 -0.0021449 NaN 25.399 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 906880 + 24936 14232 16366 16372 0.028537675519146433 LAEKMEQI 8 Unmodified _LAEKMEQI_ 0 0 0 REV__nc|ENSG00000162520|Q9H7C4-2|SYNC REV__nc|ENSG00000162520|Q9H7C4-2|SYNC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2542724609375 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 107.78 1 103.46 102.96 103.96 -4.32 0 0 0 0.20568 1 21230 21230 20.871 1.4322 1 + 24937 17504 16367 16373 24690 24690 0.013190054429401243 LAELAARSCFN 11 Unmodified _LAELAARSCFN_ 0 0 0 REV__ENST00000553950.5_1_12:57623561-57625344:+|nuORF REV__ENST00000553950.5_1_12:57623561-57625344:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 398.8688049316406 3 398.869374 1193.58629 NaN NaN NaN NaN NaN NaN NaN 10.641 1 9.5751 9.0751 10.075 -1.0664 0 0 0 0.23698 1 1162 1162 0.094841 0 1 + 24938 18766 16368 16374 24691 24691 -0.0027573085974381684 LAEMYCNCSRA 11 Unmodified _LAEMYCNCSRA_ 0 0 0 REV__HSDL1|p.R55Afs*8|1|0.37|ENSG00000103160|chr16:84131159-84131159|G/-|frameshift_variant REV__HSDL1|p.R55Afs*8|1|0.37|ENSG00000103160|chr16:84131159-84131159|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.749755859375 2 630.762126 1259.5097 NaN NaN NaN NaN NaN NaN NaN 111.17 1 111.17 110.67 111.67 0 0 0 0 0.23379 1 21867 21867 5.2969 0.066215 1 + 24939 14866 16369 16375 24692 24692 -0.1096761374290054 LAENAHLIY 9 Unmodified _LAENAHLIY_ 0 0 0 ENSG00000196659|ENST00000408939|TTC30B ENSG00000196659|ENST00000408939|TTC30B ENSG00000196659|ENST00000408939|TTC30B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.27978515625 2 522.279649 1042.54475 -0.20436 -0.00010673 0.56035 0.00029266 0.35599 0.00018593 522.2799111017426 81.402 0.89493 77.845 77.341 78.236 -3.557 62 25 4 0 0 0 0.65439 1 15979 15979 9.3474 0 1 25476000 24940 7297 16370 16376 24693 24693 0.025174564432290936 LAENPQGIH 9 Unmodified _LAENPQGIH_ 0 0 0 REV__nc|ENSG00000168026|Q8NDW8-3|TTC21A REV__nc|ENSG00000168026|Q8NDW8-3|TTC21A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25531005859375 2 489.753798 977.493044 0.11318 5.5429E-05 0.13065 6.3988E-05 0.24383 0.00011942 489.75389578741357 16.804 2.2378 16.804 16.164 18.402 0 174 63 4 0 0 0 0.19311 1 2877 2877 37.974 13.953 1 42740000 + 24941 17990 16371 16377 24694 24694 0.0033971274932582674 LAERFLAKTC 10 Unmodified _LAERFLAKTC_ 0 0 0 nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;SRGAP2B|p.T114Ifs*5|1|0.02|ENSG00000196369|chr1:144955521-144955522|-/AGCAA|frameshift_variant nc|ENSG00000196369|P0DMP2|SRGAP2B nc|ENSG00000196369|P0DMP2|SRGAP2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3201293945312 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 145.33 1 145.33 144.83 145.83 0 0 0 0 2.8426 1 29043 29043 0.043787 0 1 24942 7261 16372 16378 24695 24695 0.047580475252971155 LAERFVVS 8 Unmodified _LAERFVVS_ 0 0 0 tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1 tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1 tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2264404296875 2 460.763635 919.512717 -0.069004 -3.1794E-05 0.26664 0.00012286 0.19764 9.1065E-05 460.7636494642564 80.588 0.47942 76.749 76.498 76.977 -3.8392 16 13 2 0 0 0 0.66066 1 15247 15247 36.044 12.024 1 749540 24943 25882 16373 16379 24696 24696 0.04974088760104678 LAERLRENERR 11 Unmodified _LAERLRENERR_ 0 0 0 REV__ENST00000590268.1_1_19:55602842-55603850:-|nuORF REV__ENST00000590268.1_1_19:55602842-55603850:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.765380859375 3 481.270929 1440.79096 0.022533 1.0844E-05 1.6906 0.00081364 1.7131 0.00082448 481.271731199385 132.39 0.39346 127.75 127.48 127.88 -4.6399 17 10 2 0 0 0 0.79848 1 26109 26109 3.8459 0 1 1969600 + 24944 15819 16374 16380 24697 24697 0.08819344274979812 LAESCVNLL 9 Unmodified _LAESCVNLL_ 0 0 0 REV__ENSG00000066777|ENST00000262215|ARFGEF1 REV__ENSG00000066777|ENST00000262215|ARFGEF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25341796875 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 105.02 1 100.64 100.14 101.14 -4.3764 0 0 0 0.22251 1 20129 20129 16.942 3.4344 1 + 24945 14203 16375 16381 24698 24698 0.013190054429401243 LAESELRS 8 Unmodified _LAESELRS_ 0 0 0 AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant;AMPD2|p.P300Lfs*63|2|0.28|ENSG00000116337|chr1:109627188-109627188|C/-|frameshift_variant;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000486282.6_1_1:110163774-110168851:+|nuORF;nc|ENSG00000116337|Q01433-4|AMPD2 AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76605224609375 2 452.740357 903.46616 -0.244 -0.00011047 0.25114 0.0001137 0.0071431 3.234E-06 452.74049468577317 71.702 1.3087 68.453 68.028 69.337 -3.2492 139 36 6 0 0 0 0.73936 1 14059 14059 8.5933 0 1 54593000 24946 150 16376 16382 24699 24699 0.010566041381594005 LAESSRPAV 9 Unmodified _LAESSRPAV_ 0 0 0 REV__THSD7A|p.P225Rfs*11|1|0.16|ENSG00000005108|chr7:11636478-11636478|G/-|frameshift_variant REV__THSD7A|p.P225Rfs*11|1|0.16|ENSG00000005108|chr7:11636478-11636478|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2559509277344 2 465.256174 928.497795 -0.015016 -6.9861E-06 -0.80737 -0.00037563 -0.82238 -0.00038262 465.2557515606762 49.222 0.792 46.223 45.791 46.583 -2.999 72 22 4 0 0 0 0.2219 1 9027 9027 36.127 0 1 18066000 + 24947 24800 16377 16383 24700 24700 0.03068596892092046 LAESSRPAV 9 Unmodified _LAESSRPAV_ 0 0 0 REV__THSD7A|p.P225Rfs*11|1|0.16|ENSG00000005108|chr7:11636478-11636478|G/-|frameshift_variant REV__THSD7A|p.P225Rfs*11|1|0.16|ENSG00000005108|chr7:11636478-11636478|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2558288574219 2 465.256174 928.497795 -0.076635 -3.5655E-05 -0.70715 -0.00032901 -0.78379 -0.00036466 465.25577871493516 49.191 0.83467 46.185 45.765 46.599 -3.0068 72 23 5 0 0 0 0.2219 1 9052 9052 36.127 0 1 14254000 + 24948 24800 16377 16383 24701 24701 0.03068596892092046 LAEVDESKA 9 Unmodified _LAEVDESKA_ 0 0 0 REV__ENSG00000115423|ENST00000389394|DNAH6 REV__ENSG00000115423|ENST00000389394|DNAH6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 321.15380859375 3 321.166073 960.476391 NaN NaN NaN NaN NaN NaN NaN 61.262 1 57.892 57.392 58.392 -3.3694 0 0 0 0.23508 1 11421 11421 1.0715 0.29493 1 + 24949 15430 16378 16384 24702 24702 -0.005428329272831434 LAEWKHFL 8 Unmodified _LAEWKHFL_ 0 0 0 ENST00000358303.8_1_7:129680937-129691088:-|nuORF;ENST00000484432.1_1_7:129683626-129691088:-|nuORF ENST00000358303.8_1_7:129680937-129691088:-|nuORF ENST00000358303.8_1_7:129680937-129691088:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2748413085938 2 522.287277 1042.56 NaN NaN NaN NaN NaN NaN NaN 128.04 1 123.23 122.73 123.73 -4.817 0 0 0 0.14334 1 24580 24580 6.1918 1.4759 1 24950 8989 16379 16385 24703 24703 0.04042368031082333 LAEWSIFAE 9 Unmodified _LAEWSIFAE_ 0 0 0 REV__CPQ|p.G306E|1|0.31|ENSG00000104324|chr8:96966002-96966002|G/A|missense_variant REV__CPQ|p.G306E|1|0.31|ENSG00000104324|chr8:96966002-96966002|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.265380859375 2 533.266207 1064.51786 NaN NaN NaN NaN NaN NaN NaN 44.585 1 41.838 41.338 42.338 -2.7475 0 0 0 0.1761 1 8073 8073 26.884 2.8631 1 + 24951 13571 16380 16386 24704 24704 -0.01181652167952052 LAFAVVFY 8 Unmodified _LAFAVVFY_ 0 0 0 nc|ENSG00000157693|Q5VZI3-2|TMEM268;ENSG00000157693|ENST00000288502|TMEM268;nc|ENSG00000157693|Q5VZI3-3|TMEM268 nc|ENSG00000157693|Q5VZI3-2|TMEM268 nc|ENSG00000157693|Q5VZI3-2|TMEM268 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2593078613281 2 465.260197 928.50584 NaN NaN NaN NaN NaN NaN NaN 132.69 1 132.69 132.19 133.19 0 0 0 0 0.21486 1 26238 26238 11.114 0 1 24952 5136 16381 16387 24705 24705 0.03872775879517576 LAFDGEGGELS 11 Unmodified _LAFDGEGGELS_ 0 0 0 REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.786376953125 2 547.753661 1093.49277 NaN NaN NaN NaN NaN NaN NaN 146.02 1 140.91 140.41 141.41 -5.1108 0 0 0 0.22501 1 28233 28233 12.241 0 1 + 24953 13643 16382 16388 24706 24706 -0.050237517611549265 LAFPARRRG 9 Unmodified _LAFPARRRG_ 0 0 0 REV__ENSG00000168621|ENST00000326524|GDNF REV__ENSG00000168621|ENST00000326524|GDNF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2725219726562 2 522.314692 1042.61483 NaN NaN NaN NaN NaN NaN NaN 146.51 1 141.4 140.9 141.9 -5.1108 0 0 0 0.19684 1 28336 28336 0.12781 0 1 + 24954 18040 16383 16389 24707 24707 0.09522799622368439 LAFPPGGG 8 Unmodified _LAFPPGGG_ 0 0 0 ENST00000330212.7_1_3:113672705-113672987:+|nuORF ENST00000330212.7_1_3:113672705-113672987:+|nuORF ENST00000330212.7_1_3:113672705-113672987:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 358.1973571777344 2 358.192314 714.370075 -0.32722 -0.00011721 1.3039 0.00046704 0.97667 0.00034984 358.19242187656874 47.569 0.51895 44.7 44.391 44.91 -2.869 32 14 3 0 0 0 0.88047 1 9016 9016 0.79363 0 1 875630 24955 8765 16384 16390 24708 24708 0.0014650108872729106 LAFPPGGG 8 Unmodified _LAFPPGGG_ 0 0 0 ENST00000330212.7_1_3:113672705-113672987:+|nuORF ENST00000330212.7_1_3:113672705-113672987:+|nuORF ENST00000330212.7_1_3:113672705-113672987:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 358.192314 714.370075 0.037185 1.3319E-05 0.22706 8.1331E-05 0.26425 9.4651E-05 358.1923061690131 44.78 0.53082 44.78 44.459 44.99 0 0.11817 -0.00038027 NaN 0.79363 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1066700 24956 8765 16384 16390 0.0014650108872729106 LAFPPGGG 8 Unmodified _LAFPPGGG_ 0 0 0 ENST00000330212.7_1_3:113672705-113672987:+|nuORF ENST00000330212.7_1_3:113672705-113672987:+|nuORF ENST00000330212.7_1_3:113672705-113672987:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 358.192314 714.370075 0.0072906 2.6115E-06 0.71601 0.00025647 0.7233 0.00025908 358.1922182057213 47.528 0.51593 44.586 44.308 44.824 -2.9421 -0.076081 -2.9997E-05 NaN 0.79363 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 856490 24957 8765 16384 16390 0.0014650108872729106 LAFPPGGG 8 Unmodified _LAFPPGGG_ 0 0 0 ENST00000330212.7_1_3:113672705-113672987:+|nuORF ENST00000330212.7_1_3:113672705-113672987:+|nuORF ENST00000330212.7_1_3:113672705-113672987:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 358.192314 714.370075 -0.77657 -0.00027816 1.43 0.00051223 0.65346 0.00023406 358.19254627091584 47.532 0.44449 44.583 44.399 44.844 -2.9499 -0.079549 0.00048152 NaN 0.79363 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1011200 24958 8765 16384 16390 0.0014650108872729106 LAFRYRRVKEM 11 Unmodified _LAFRYRRVKEM_ 0 0 0 nc|ENSG00000064655|O00167-3|EYA2;nc|ENSG00000064655|O00167-2|EYA2;ENSG00000064655|ENST00000327619|EYA2 nc|ENSG00000064655|O00167-3|EYA2 nc|ENSG00000064655|O00167-3|EYA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2681579589844 3 490.278367 1467.81327 NaN NaN NaN NaN NaN NaN NaN 155.88 1 151.1 150.6 151.6 -4.7791 0 0 0 0.22632 1 30988 30988 0.50596 0 1 24959 1340 16385 16391 24709 24709 0.09807852419044139 LAGAFQGP 8 Unmodified _LAGAFQGP_ 0 0 0 nc|ENSG00000278224|Q2TBC4-2|PRICKLE4 nc|ENSG00000278224|Q2TBC4-2|PRICKLE4 nc|ENSG00000278224|Q2TBC4-2|PRICKLE4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21917724609375 2 380.703046 759.391539 -0.64354 -0.000245 0.6795 0.00025869 0.03596 1.369E-05 380.703287044799 56.717 0.55971 53.541 53.298 53.858 -3.1761 25 15 2 0 0 0 8448 1 10545 10545 0.12286 0 1 823940 24960 12640 16386 16392 24710 24710 0.0022188611743558795 LAGALAEET 9 Unmodified _LAGALAEET_ 0 0 0 REV__nc|ENSG00000112053|Q96RN1-4|SLC26A8 REV__nc|ENSG00000112053|Q96RN1-4|SLC26A8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2174072265625 2 437.729458 873.444362 -0.32546 -0.00014247 0.16651 7.2886E-05 -0.15895 -6.9579E-05 437.72952880874936 81.942 0.69321 78.254 77.868 78.562 -3.6879 25 19 2 0 0 0 0.43406 1 15581 15581 30.225 7.0764 1 1017500 + 24961 24000 16387 16393 24711 24711 0.0025779938957839477 LAGDLLQVQ 9 Unmodified _LAGDLLQVQ_ 0 0 0 ENSG00000168427|ENST00000409223|KLHL30 ENSG00000168427|ENST00000409223|KLHL30 ENSG00000168427|ENST00000409223|KLHL30 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7208557128906 2 478.7742 955.533846 -0.060635 -2.9031E-05 0.09409 4.5048E-05 0.033454 1.6017E-05 478.77416113071075 150.96 0.59909 150.96 150.6 151.2 0 26 16 2 0 0 0 0.049627 2 30215 30187;30215 71.134 3.0529 1 2655500 24962 5907 16388 16394 24712;24713 24713 0.0543005406894963 LAGDLQQK 8 Unmodified _LAGDLQQK_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2359619140625 2 436.745442 871.476331 -0.17466 -7.6282E-05 0.16376 7.1521E-05 -0.0109 -4.7605E-06 436.74545638916425 78.367 1.0523 74.708 74.268 75.321 -3.6588 82 29 4 0 0 0 0.2118 1 14987 14987 44.407 0.54872 1 21138000 + 24963 24099 16389 16395 24714 24714 0.035452118633770624 LAGGDERR 8 Unmodified _LAGGDERR_ 0 0 0 REV__ENST00000309352.3_1_17:73900754-73901005:-|nuORF REV__ENST00000309352.3_1_17:73900754-73901005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2308654785156 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 38.191 1 35.749 35.249 36.249 -2.4419 0 0 0 0.21171 1 6788 6788 15.847 1.9411 1 + 24964 20467 16390 16396 24715 24715 0.00510272918040755 LAGGGCRAGPG 11 Unmodified _LAGGGCRAGPG_ 0 0 0 ENST00000284202.8_1_18:22006682-22007982:+|nuORF ENST00000284202.8_1_18:22006682-22007982:+|nuORF ENST00000284202.8_1_18:22006682-22007982:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2236328125 2 458.226894 914.439234 NaN NaN NaN NaN NaN NaN NaN 113.59 1 109.07 108.57 109.57 -4.5259 0 0 0 0.2268 1 21808 21808 10.824 0.64053 1 24965 8452 16391 16397 24716 24716 -0.021407829540294188 LAGGHVVP 8 Unmodified _LAGGHVVP_ 0 0 0 ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK;ENST00000493544.1_1_2:242054361-242072488:-|nuORF;nc|ENSG00000115687|Q96RG2-4|PASK;PASK|p.G604Afs*4|1|0.43|ENSG00000115687|chr2:241127104-241127104|C/-|frameshift_variant;PASK|p.H679Pfs*57|1|0.41|ENSG00000115687|chr2:241126879-241126880|-/G|frameshift_variant ENSG00000115687|ENST00000234040|PASK ENSG00000115687|ENST00000234040|PASK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2182922363281 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 55.754 1 52.578 52.078 53.078 -3.1761 0 0 0 0.2396 1 10358 10358 0.12286 0 1 24966 2878 16392 16398 24717 24717 0.038898788713822796 LAGIGYSS 8 Unmodified _LAGIGYSS_ 0 0 0 ENSG00000197786|ENST00000357377|OR5B17 ENSG00000197786|ENST00000357377|OR5B17 ENSG00000197786|ENST00000357377|OR5B17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 384.4945983886719 2 384.200336 766.386119 NaN NaN NaN NaN NaN NaN NaN 63.184 1 59.927 59.427 60.427 -3.2567 0 0 0 0.23711 1 11858 11858 0.30703 0 1 24967 7401 16393 16399 24718 24718 -0.006418374650365877 LAGLFPGS 8 Unmodified _LAGLFPGS_ 0 0 0 ENST00000342983.6_1_X:131351517-131351760:-|nuORF ENST00000342983.6_1_X:131351517-131351760:-|nuORF ENST00000342983.6_1_X:131351517-131351760:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21380615234375 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 59.878 1 59.878 59.378 60.378 0 0 0 0 0.23749 1 11475 11475 0.12286 0 1 24968 8865 16394 16400 24719 24719 0.022150567772428076 LAGLKNLAE 9 Unmodified _LAGLKNLAE_ 0 0 0 ENST00000598221.1_1_19:49796478-49828345:-|nuORF ENST00000598221.1_1_19:49796478-49828345:-|nuORF ENST00000598221.1_1_19:49796478-49828345:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25396728515625 2 464.776742 927.538931 0.212 9.8531E-05 -0.044904 -2.087E-05 0.16709 7.7661E-05 464.7764441516221 66.097 0.20977 62.612 62.429 62.638 -3.4847 6 5 2 0 0 0 0.47479 1 12357 12357 30.637 4.2953 1 546520 24969 11681 16395 16401 24720 24720 0.07226357931563143 LAGLSSLALL 10 Unmodified _LAGLSSLALL_ 0 0 0 nc|ENSG00000254402|Q50LG9|LRRC24 nc|ENSG00000254402|Q50LG9|LRRC24 nc|ENSG00000254402|Q50LG9|LRRC24 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73846435546875 2 479.302593 956.590633 0.22287 0.00010682 0.085155 4.0815E-05 0.30802 0.00014764 479.30261264729177 122.62 0.56724 118.07 117.85 118.41 -4.5476 21 15 2 0 0 0 0.55706 1 24185 24185 10.824 0 1 1291200 24970 12627 16396 16402 24721 24721 0.11060101625469088 LAGNAWQL 8 Unmodified _LAGNAWQL_ 0 0 0 SP4|p.T140Lfs*28|1|0.2|ENSG00000105866|chr7:21429579-21429579|A/-|frameshift_variant;ENSG00000105866|ENST00000222584|SP4 SP4|p.T140Lfs*28|1|0.2|ENSG00000105866|chr7:21429579-21429579|A/-|frameshift_variant SP4|p.T140Lfs*28|1|0.2|ENSG00000105866|chr7:21429579-21429579|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21527099609375 2 436.734877 871.455202 -0.10757 -4.6981E-05 0.13484 5.8889E-05 0.027268 1.1909E-05 436.73474562469096 100.18 0.38458 96.019 95.835 96.22 -4.1594 15 10 2 0 0 0 0.97994 1 19674 19674 5.7604 0 1 545370 24971 2351 16397 16403 24722 24722 0.014332465545066952 LAGNPNCGK 9 Unmodified _LAGNPNCGK_ 0 0 0 tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1 tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1 tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21649169921875 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 90.579 1 90.579 90.079 91.079 0 0 0 0 0.23508 1 17697 17697 12.532 2.3482 1 24972 25955 16398 16404 24723 24723 -0.023875877025943737 LAGQLSLFL 9 Unmodified _LAGQLSLFL_ 0 0 0 REV__ENST00000482356.5_1_3:121796726-121810461:+|nuORF REV__ENST00000482356.5_1_3:121796726-121810461:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2529296875 2 481.289485 960.564418 NaN NaN NaN NaN NaN NaN NaN 105.47 1 101.21 100.71 101.71 -4.2638 0 0 0 0.23508 1 20758 20758 9.3474 0 1 + 24973 22188 16399 16405 24724 24724 0.08255832453971834 LAGQWFKL 8 Unmodified _LAGQWFKL_ 0 0 0 REV__nc|ENSG00000197905|Q15561-3|TEAD4 REV__nc|ENSG00000197905|Q15561-3|TEAD4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7762451171875 2 481.776545 961.538538 NaN NaN NaN NaN NaN NaN NaN 107.74 1 103.42 102.92 103.92 -4.32 0 0 0 0.21486 1 21221 21221 11.114 0.29054 1 + 24974 24232 16400 16406 24725 24725 0.056229830023767136 LAGSDSAPML 10 Unmodified _LAGSDSAPML_ 0 0 0 REV__ENSG00000243978|ENST00000520821|RTL9 REV__ENSG00000243978|ENST00000520821|RTL9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23797607421875 2 481.236593 960.458632 -0.050106 -2.4113E-05 -0.10357 -4.984E-05 -0.15367 -7.3953E-05 481.2365677966729 96.471 0.86469 96.471 96.081 96.945 0 66 24 3 0 0 0 0.40256 1 18849 18849 30.637 30.637 1 8807400 + 24975 19806 16401 16407 24726 24726 -0.02317871453783482 LAGSDSAPML 10 Unmodified _LAGSDSAPML_ 0 0 0 REV__ENSG00000243978|ENST00000520821|RTL9 REV__ENSG00000243978|ENST00000520821|RTL9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2377624511719 2 481.236593 960.458632 0.31742 0.00015275 -0.31683 -0.00015247 0.00059406 2.8588E-07 481.2364544883717 100.74 0.95931 96.438 96.021 96.98 -4.297 76 27 3 0 0 0 0.48672 1 19214 19214 25.399 0 1 13051000 + 24976 19806 16401 16407 24727 24727 -0.02317871453783482 LAGSSAGGT 9 Unmodified _LAGSSAGGT_ 0 0 0 ENSG00000185269|ENST00000409678|NOTUM ENSG00000185269|ENST00000409678|NOTUM ENSG00000185269|ENST00000409678|NOTUM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.5128479003906 2 360.679768 719.344983 NaN NaN NaN NaN NaN NaN NaN 34.41 1 32.157 31.657 32.657 -2.2527 0 0 0 0.19649 1 6034 6034 0.40827 0 1 24977 6975 16402 16408 24728 24728 -0.02591598504511694 LAGTKIIEV 9 Unmodified _LAGTKIIEV_ 0 0 0 SEC61A1|p.A97T|1|0.45|ENSG00000058262|chr3:128056777-128056777|G/A|missense_variant SEC61A1|p.A97T|1|0.45|ENSG00000058262|chr3:128056777-128056777|G/A|missense_variant SEC61A1|p.A97T|1|0.45|ENSG00000058262|chr3:128056777-128056777|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 473.7401428222656 2 472.294768 942.574983 0.26441 0.00012488 -0.2323 -0.00010972 0.032103 1.5162E-05 472.29463592950736 139.66 0.73657 134.81 134.39 135.12 -4.8492 46 20 3 0 0 0 0.37087 1 26907 26907 1.2148 1.087 1 3930000 24978 25651 16403 16409 24729 24729 0.10139815108436778 LAGVATFMVI 10 Unmodified _LAGVATFMVI_ 0 0 0 nc|ENSG00000242612|Q9NUI1-2|DECR2 nc|ENSG00000242612|Q9NUI1-2|DECR2 nc|ENSG00000242612|Q9NUI1-2|DECR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 341.2148742675781 3 341.196539 1020.56779 NaN NaN NaN NaN NaN NaN NaN 128.88 1 124.06 123.56 124.56 -4.817 0 0 0 0.22588 1 24740 24740 0.77653 0 1 24979 12621 16404 16410 24730 24730 0.05832759236329821 LAGVQDQLI 9 Unmodified _LAGVQDQLI_ 0 0 0 ENST00000296214.9_1_1:37974883-37974913:-|nuORF;ENST00000485039.1_1_1:37967370-37979088:-|nuORF;nc|ENSG00000163875|Q9HAF1-2|MEAF6;ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6 ENST00000296214.9_1_1:37974883-37974913:-|nuORF ENST00000296214.9_1_1:37974883-37974913:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73583984375 2 478.7742 955.533846 -0.052457 -2.5115E-05 -0.38854 -0.00018603 -0.441 -0.00021114 478.77408548299195 86.793 0.35033 83.066 82.906 83.257 -3.727 13 9 2 0 0 0 0.27865 1 16946 16946 41.84 0 1 1193300 24980 5475 16405 16411 24731 24731 0.054300540689382615 LAHCKIVDF 9 Unmodified _LAHCKIVDF_ 0 0 0 REV__nc|ENSG00000089177|Q96L93-2|KIF16B REV__nc|ENSG00000089177|Q96L93-2|KIF16B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6793212890625 2 523.278595 1044.54264 0.40289 0.00021082 0.2576 0.0001348 0.66049 0.00034562 523.7798010955532 149.98 0.59915 144.86 144.65 145.24 -5.1204 29 16 3 0 0 0 0.8319 1 29127 29127 12.532 1.0368 1 1553100 + 24981 23963 16406 16412 24732 24732 0.02214704433777115 LAHDFLAS 8 Unmodified _LAHDFLAS_ 0 0 0 REV__ENSG00000156097|ENST00000527748|GPR61 REV__ENSG00000156097|ENST00000527748|GPR61 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2280578613281 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 128.13 1 123.31 122.81 123.81 -4.817 0 0 0 0.21181 1 24597 24597 15.768 5.5848 1 + 24982 17244 16407 16413 24733 24733 -0.0021045968238695423 LAHFKSFD 8 Unmodified _LAHFKSFD_ 0 0 0 ENST00000565298.5_1_16:1576517-1634259:-|nuORF;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENSG00000187535|ENST00000426508|IFT140 ENST00000565298.5_1_16:1576517-1634259:-|nuORF ENST00000565298.5_1_16:1576517-1634259:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.1684265136719 3 322.167749 963.481417 NaN NaN NaN NaN NaN NaN NaN 6.8429 1 6.8429 6.3429 7.3429 0 0 0 0 0.21486 1 562 562 0.45834 0 1 24983 7112 16408 16414 24734 24734 -0.0017848427399940192 LAHIKRIPV 9 Unmodified _LAHIKRIPV_ 0 0 0 REV__nc|ENSG00000078618|O43847-2|NRDC REV__nc|ENSG00000078618|O43847-2|NRDC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6942749023438 2 523.845294 1045.67603 NaN NaN NaN NaN NaN NaN NaN 160.75 1 160.75 160.25 161.25 0 0 0 0 0.23508 1 32278 32278 5.2307 0.90143 1 + 24984 14384 16409 16415 24735 24735 0.1550231160176736 LAHIVNDF 8 Unmodified _LAHIVNDF_ 0 0 0 ENST00000266673.9_1_12:72080266-72080464:+|nuORF ENST00000266673.9_1_12:72080266-72080464:+|nuORF ENST00000266673.9_1_12:72080266-72080464:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16717529296875 3 310.167749 927.481417 NaN NaN NaN NaN NaN NaN NaN 67.059 1 67.059 66.559 67.559 0 0 0 0 0.20568 1 12957 12957 15.847 1.9411 1 24985 8375 16410 16416 24736 24736 0.01477515725991907 LAHIVNDF 8 Unmodified _LAHIVNDF_ 0 0 0 ENST00000266673.9_1_12:72080266-72080464:+|nuORF ENST00000266673.9_1_12:72080266-72080464:+|nuORF ENST00000266673.9_1_12:72080266-72080464:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1681213378906 3 310.167749 927.481417 NaN NaN NaN NaN NaN NaN NaN 70.136 1 66.887 66.387 67.387 -3.2492 0 0 0 0.22934 1 13644 13644 0.68139 0.054566 1 24986 8375 16410 16416 24737 24737 0.01477515725991907 LAHIVNDF 8 Unmodified _LAHIVNDF_ 0 0 0 ENST00000266673.9_1_12:72080266-72080464:+|nuORF ENST00000266673.9_1_12:72080266-72080464:+|nuORF ENST00000266673.9_1_12:72080266-72080464:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1681213378906 3 310.167749 927.481417 NaN NaN NaN NaN NaN NaN NaN 70.157 1 66.908 66.408 67.408 -3.2492 0 0 0 0.20568 1 13648 13648 15.847 1.9411 1 24987 8375 16410 16416 24738 24738 0.01477515725991907 LAHIVNDF 8 Unmodified _LAHIVNDF_ 0 0 0 ENST00000266673.9_1_12:72080266-72080464:+|nuORF ENST00000266673.9_1_12:72080266-72080464:+|nuORF ENST00000266673.9_1_12:72080266-72080464:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1670837402344 3 310.167749 927.481417 NaN NaN NaN NaN NaN NaN NaN 70.496 1 66.917 66.417 67.417 -3.5798 0 0 0 0.23107 1 13287 13287 0.68139 0 1 24988 8375 16410 16416 24739 24739 0.01477515725991907 LAHIVNDF 8 Unmodified _LAHIVNDF_ 0 0 0 ENST00000266673.9_1_12:72080266-72080464:+|nuORF ENST00000266673.9_1_12:72080266-72080464:+|nuORF ENST00000266673.9_1_12:72080266-72080464:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1681213378906 3 310.167749 927.481417 NaN NaN NaN NaN NaN NaN NaN 70.632 1 67.165 66.665 67.665 -3.467 0 0 0 0.23711 1 13378 13378 0.063987 0 1 24989 8375 16410 16416 24740 24740 0.01477515725991907 LAHLLHLY 8 Unmodified _LAHLLHLY_ 0 0 0 REV__nc|ENSG00000185433|P58513|LINC00158 REV__nc|ENSG00000185433|P58513|LINC00158 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.272216796875 2 490.28982 978.565087 NaN NaN NaN NaN NaN NaN NaN 146.13 1 141.44 140.94 141.94 -4.6868 0 0 0 0.21486 1 28977 28977 11.114 1.767 1 + 24990 24207 16411 16417 24741 24741 0.07494671893687155 LAHPQESH 8 Unmodified _LAHPQESH_ 0 0 0 nc|ENSG00000135409|Q16671-3|AMHR2;ENSG00000135409|ENST00000257863|AMHR2;AMHR2|p.P518T|1|0.2|ENSG00000135409|chr12:53431303-53431303|C/A|missense_variant nc|ENSG00000135409|Q16671-3|AMHR2 nc|ENSG00000135409|Q16671-3|AMHR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2265319824219 2 459.725041 917.435529 -0.091521 -4.2075E-05 0.26338 0.00012108 0.17186 7.9009E-05 459.7251132541224 47.766 0.72743 44.816 44.568 45.295 -2.9499 36 20 2 0 0 0 0.71876 1 8764 8764 11.64 0.81637 1 3143200 24991 3926 16412 16418 24742 24742 -0.026491294562333678 LAHPVRAPG 9 Unmodified _LAHPVRAPG_ 0 0 0 ENSG00000105647|ENST00000222254|PIK3R2;ENST00000426902.5_1_19:18273817-18280101:+|nuORF ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2388610839844 2 459.269419 916.524284 -0.065493 -3.0079E-05 -1.0549 -0.0004845 -1.1204 -0.00051458 459.2688499941694 60.125 0.63218 60.125 59.784 60.416 0 35 17 3 0 0 0 0.52414 1 11496 11496 18.135 2.2878 1 2195900 24992 2326 16413 16419 24743 24743 0.06268330574084757 LAHPVRAPG 9 Unmodified _LAHPVRAPG_ 0 0 0 ENSG00000105647|ENST00000222254|PIK3R2;ENST00000426902.5_1_19:18273817-18280101:+|nuORF ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.269419 916.524284 -0.02046 -9.3966E-06 -1.0885 -0.0004999 -1.1089 -0.00050929 459.26889258632184 62.778 0.6219 59.816 59.5 60.122 -2.9614 -0.16079 0.00015536 NaN 18.135 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3118600 24993 2326 16413 16419 0.06268330574084757 LAHPVRAPG 9 Unmodified _LAHPVRAPG_ 0 0 0 ENSG00000105647|ENST00000222254|PIK3R2;ENST00000426902.5_1_19:18273817-18280101:+|nuORF ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.269419 916.524284 0.11627 5.3401E-05 -1.3819 -0.00063466 -1.2656 -0.00058126 459.2687701051718 63.413 0.57412 59.997 59.644 60.219 -3.4158 0.020199 -0.00011418 NaN 18.135 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3001200 24994 2326 16413 16419 0.06268330574084757 LAHPVRAPG 9 Unmodified _LAHPVRAPG_ 0 0 0 ENSG00000105647|ENST00000222254|PIK3R2;ENST00000426902.5_1_19:18273817-18280101:+|nuORF ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.269419 916.524284 0.24319 0.00011169 -1.4047 -0.00064512 -1.1615 -0.00053342 459.26873550446123 63.226 0.5523 59.969 59.677 60.229 -3.2567 -0.0076974 -0.00013508 NaN 18.135 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3796500 24995 2326 16413 16419 0.06268330574084757 LAHQGIMGGP 10 Unmodified _LAHQGIMGGP_ 0 0 0 ENST00000368872.5_2_1:151288866-151288902:-|nuORF ENST00000368872.5_2_1:151288866-151288902:-|nuORF ENST00000368872.5_2_1:151288866-151288902:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2642822265625 2 490.752744 979.490935 0.61233 0.0003005 -0.56027 -0.00027495 0.052063 2.555E-05 490.75264160348564 79.823 0.55997 79.823 79.651 80.211 0 21 15 2 0 0 0 0.61278 1 15597 15597 20.454 0 1 1508900 24996 9102 16414 16420 24744 24744 0.00036960739885216753 LAHRGGNP 8 Unmodified _LAHRGGNP_ 0 0 0 ENST00000585471.1_1_17:43296488-43297686:-|nuORF ENST00000585471.1_1_17:43296488-43297686:-|nuORF ENST00000585471.1_1_17:43296488-43297686:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.1148376464844 2 411.222469 820.430384 NaN NaN NaN NaN NaN NaN NaN 47.629 1 44.679 44.179 45.179 -2.9499 0 0 0 0.21486 1 8700 8700 6.3541 0 1 24997 11535 16415 16421 24745 24745 0.012986114718160024 LAIESVVQA 9 Unmodified _LAIESVVQA_ 0 0 0 REV__SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant REV__SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2593078613281 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 145.53 1 140.86 140.36 141.36 -4.6694 0 0 0 0.20155 1 28849 28849 23.148 1.4018 1 + 24998 18584 16416 16422 24746 24746 0.05582651694658125 LAIGYGKSSIS 11 Unmodified _LAIGYGKSSIS_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7742919921875 2 548.305864 1094.59717 0.11317 6.2049E-05 -0.10241 -5.6152E-05 0.010754 5.8967E-06 548.3056650692147 41.706 0.55297 39.1 38.807 39.36 -2.606 34 15 3 0 0 0 0.90723 1 7486 7486 16.149 4.6544 1 2547800 + 24999 18798 16417 16423 24747 24747 0.05365994786188821 LAIKWRQCLRF 11 Unmodified _LAIKWRQCLRF_ 0 0 0 REV__ENST00000433384.6_1_8:38153451-38162124:-|nuORF REV__ENST00000433384.6_1_8:38153451-38162124:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.726806640625 3 478.611458 1432.81254 NaN NaN NaN NaN NaN NaN NaN 61.708 1 61.708 61.208 62.208 0 0 0 0 0.23264 1 11833 11833 2.8433 0.4085 1 + 25000 21644 16418 16424 24748 24748 0.113450577699723 LAILHHLY 8 Unmodified _LAILHHLY_ 0 0 0 ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant;nc|ENSG00000125257|O15439-3|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4 ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2646484375 2 490.28982 978.565087 NaN NaN NaN NaN NaN NaN NaN 127.12 1 127.12 126.62 127.62 0 0 0 0 0.21486 1 25090 25090 11.114 1.7313 1 25001 18 16419 16425 24749 24749 0.07494671893687155 LAILIAETAV 10 Unmodified _LAILIAETAV_ 0 0 0 REV__ENSG00000163393|ENST00000369503|SLC22A15 REV__ENSG00000163393|ENST00000369503|SLC22A15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 508.3187561035156 2 507.3157 1012.61685 0.31048 0.00015751 -0.30429 -0.00015437 0.0061823 3.1364E-06 507.3156107910734 119.62 0.76201 115.15 114.68 115.44 -4.467 48 21 3 0 0 0 0.41835 1 23066 23066 0.84494 0 1 3744700 + 25002 17567 16420 16426 24750 24750 0.11104370796931562 LAILPLIKY 9 Unmodified _LAILPLIKY_ 0 0 0 REV__tr|U7SLB4|U7SLB4_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01957PE=4SV=1 REV__tr|U7SLB4|U7SLB4_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01957PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2807006835938 2 522.346803 1042.67905 NaN NaN NaN NaN NaN NaN NaN 118.83 1 118.83 118.33 119.33 0 0 0 0 0.23508 1 23406 23406 5.2307 1.2863 1 + 25003 24942 16421 16427 24751 24751 0.15942141935943255 LAILRKFW 8 Unmodified _LAILRKFW_ 0 0 0 REV__RSRC1|p.Q325R|1|0.29|ENSG00000174891|chr3:158544244-158544244|A/G|missense_variant REV__RSRC1|p.Q325R|1|0.29|ENSG00000174891|chr3:158544244-158544244|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6901245117188 2 523.829112 1045.64367 0.18535 9.7089E-05 1.8089 0.00094754 1.9942 0.0010446 523.8315613619909 141.33 0.17053 141.33 141.23 141.4 0 6 4 2 0 0 0 0.89225 1 28140 28140 3.2813 0 1 5004900 + 25004 18437 16422 16428 24752 24752 0.12267524198796309 LAIPRRVK 8 Unmodified _LAIPRRVK_ 0 0 0 ENST00000064778.8_1_11:73115379-73115817:-|nuORF ENST00000064778.8_1_11:73115379-73115817:-|nuORF ENST00000064778.8_1_11:73115379-73115817:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.5462951660156 3 318.218666 951.634169 -0.52068 -0.00016569 0.39279 0.00012499 -0.12789 -4.0697E-05 318.2187259160914 40.216 0.81489 37.581 37.156 37.97 -2.6348 61 22 4 0 0 0 8448 1 7515 7515 3.2813 0 1 12463000 25005 8070 16423 16429 24753 24753 0.15641755913270572 LAIQVLNAFY 10 Unmodified _LAIQVLNAFY_ 0 0 0 RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3262939453125 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 43.762 1 41.015 40.515 41.515 -2.7475 0 0 0 0.22588 1 7911 7911 4.3292 0 1 25006 12859 16424 16430 24754 24754 0.06935175545504535 LAIRVSVHSL 10 Unmodified _LAIRVSVHSL_ 0 0 0 nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A;nc|ENSG00000168356|Q9UI33-2|SCN11A;SCN11A|p.F723Lfs*37|1|0.39|ENSG00000168356|chr3:38897079-38897079|A/-|frameshift_variant;SCN11A|p.K457Rfs*15|1|0.1|ENSG00000168356|chr3:38908052-38908052|T/-|frameshift_variant nc|ENSG00000168356|Q9UI33-3|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7691650390625 2 547.837665 1093.66078 NaN NaN NaN NaN NaN NaN NaN 131.86 1 131.86 131.36 132.36 0 0 0 0 0.22588 1 26062 26062 9.3831 0.78985 1 25007 5900 16425 16431 24755 24755 0.11769400013940867 LAISPGTY 8 Unmodified _LAISPGTY_ 0 0 0 REV__ENST00000334370.8_1_19:42830159-42830195:+|nuORF REV__ENST00000334370.8_1_19:42830159-42830195:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.1723937988281 2 411.223811 820.433069 NaN NaN NaN NaN NaN NaN NaN 50.946 1 47.894 47.394 48.394 -3.0517 0 0 0 0.21486 1 9375 9375 2.8892 0 1 + 25008 20644 16426 16432 24756 24756 0.015670220860897643 LAISSVSHSSY 11 Unmodified _LAISSVSHSSY_ 0 0 0 REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.321533203125 2 575.790578 1149.5666 0.66366 0.00038213 -0.85619 -0.00049298 -0.19253 -0.00011086 575.7901508518196 100.65 0.49337 100.65 100.38 100.87 0 18 13 2 0 0 0 0.88709 1 19768 19768 18.146 7.0319 1 1564800 + 25009 18363 16427 16433 24757 24757 -0.002197835988454244 LAKFLAKLLY 10 Unmodified _LAKFLAKLLY_ 0 0 0 REV__ENSG00000172123|ENST00000304905|SLFN12 REV__ENSG00000172123|ENST00000304905|SLFN12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.250244140625 2 590.378635 1178.74272 NaN NaN NaN NaN NaN NaN NaN 110.23 1 106.04 105.54 106.54 -4.1826 0 0 0 0.22588 1 21212 21212 1.8442 0 1 + 25010 18273 16428 16434 24758 24758 0.1604950237306184 LAKKACES 8 Unmodified _LAKKACES_ 0 0 0 REV__ENST00000492779.5_1_20:34292405-34320086:-|nuORF REV__ENST00000492779.5_1_20:34292405-34320086:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2366638183594 2 425.228571 848.442588 NaN NaN NaN NaN NaN NaN NaN 83.261 1 79.562 79.062 80.062 -3.6985 0 0 0 0.21486 1 15892 15892 5.7604 0 1 + 25011 16051 16429 16435 24759 24759 0.01230467099969701 LAKQYQEY 8 Unmodified _LAKQYQEY_ 0 0 0 REV__nc|ENSG00000125912|Q969V3-2|NCLN REV__nc|ENSG00000125912|Q969V3-2|NCLN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2658081054688 2 521.763832 1041.51311 -0.13341 -6.9609E-05 -0.40137 -0.00020942 -0.53478 -0.00027903 522.2662486618926 148.25 0.20668 143.54 143.48 143.68 -4.7095 6 5 2 0 0 0 0.72861 2 29445 29445;29453 10.183 2.2732 1 2380900 + 25012 15842 16430 16436 24760;24761 24760 -0.00598536310712916 LAKRNWAC 8 Unmodified _LAKRNWAC_ 0 0 0 REV__ENST00000479682.5_1_20:13797056-13797853:+|nuORF REV__ENST00000479682.5_1_20:13797056-13797853:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25439453125 2 481.255454 960.496355 NaN NaN NaN NaN NaN NaN NaN 179.79 1 175 174.5 175.5 -4.7898 0 0 0 0.21486 1 36782 36782 0.69038 0.088878 1 + 25013 14770 16431 16437 24762 24762 0.01452684322339337 LAKRQGRWYES 11 Unmodified _LAKRQGRWYES_ 0 0 0 REV__ENSG00000178038|ENST00000318962|ALS2CL REV__ENSG00000178038|ENST00000318962|ALS2CL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.240966796875 3 465.249354 1392.72623 -0.0078886 -3.6702E-06 -1.2507 -0.00058187 -1.2586 -0.00058554 465.24871159652224 106.37 0.62028 102 101.65 102.27 -4.3764 29 17 2 0 0 0 0.79428 1 20367 20367 4.4062 0.56024 1 2528900 + 25014 18585 16432 16438 24763 24763 0.045577694689882264 LAKRRKHLE 9 Unmodified _LAKRRKHLE_ 0 0 0 REV__ENST00000562272.5_1_16:23691188-23701381:+|nuORF REV__ENST00000562272.5_1_16:23691188-23701381:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3182373046875 2 575.862006 1149.70946 0.32284 0.00018591 -1.2145 -0.00069938 -0.89165 -0.00051347 576.3649591446698 145.88 0.21054 140.88 140.74 140.95 -5 6 5 2 0 0 0 0.68435 1 28197 28197 7.2892 0.56607 1 1000400 + 25015 17879 16433 16439 24764 24764 0.1405931337369566 LAKRVAEIGL 10 Unmodified _LAKRVAEIGL_ 0 0 0 REV__nc|ENSG00000181222|P24928|POLR2A REV__nc|ENSG00000181222|P24928|POLR2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5635681152344 3 357.229119 1068.66553 0.16559 5.9154E-05 -0.53935 -0.00019267 -0.37376 -0.00013352 357.22887219016974 74.89 0.52331 71.213 70.9 71.423 -3.6764 23 14 2 0 0 0 0.73195 1 14134 14134 7.9454 1.7536 1 913500 + 25016 18723 16434 16440 24765 24765 0.13394284156697722 LAKTKLKK 8 Unmodified _LAKTKLKK_ 0 0 0 REV__ENST00000484528.1_1_2:234465455-234475343:-|nuORF REV__ENST00000484528.1_1_2:234465455-234475343:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2593078613281 2 465.328945 928.643337 NaN NaN NaN NaN NaN NaN NaN 156.61 1 151.82 151.32 152.32 -4.7885 0 0 0 0.21486 1 31144 31144 0.79363 0 1 + 25017 14481 16435 16441 24766 24766 0.17616104478940997 LAKVPHCVA 9 Unmodified _LAKVPHCVA_ 0 0 0 REV__nc|ENSG00000082556|P41145-2|OPRK1 REV__nc|ENSG00000082556|P41145-2|OPRK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1694030761719 3 313.181112 936.521507 NaN NaN NaN NaN NaN NaN NaN 42.906 1 40.3 39.8 40.8 -2.606 0 0 0 0.23508 1 7729 7729 2.7352 0.89096 1 + 25018 14441 16436 16442 24767 24767 0.050707391249147804 LAKWSSLSA 9 Unmodified _LAKWSSLSA_ 0 0 0 REV__PVRIG|p.T86Pfs*238|1|0.32|ENSG00000213413|chr7:100220245-100220245|G/-|frameshift_variant REV__PVRIG|p.T86Pfs*238|1|0.32|ENSG00000213413|chr7:100220245-100220245|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76873779296875 2 481.768917 961.523281 -0.14162 -6.823E-05 -0.22955 -0.00011059 -0.37117 -0.00017882 481.76881175582326 104.37 0.54475 100.15 99.89 100.44 -4.2183 26 15 3 0 0 0 0.35443 1 20494 20494 28.487 0.31361 1 1985000 + 25019 24535 16437 16443 24768 24768 0.040980714145121055 LAKWSSLSA 9 Unmodified _LAKWSSLSA_ 0 0 0 REV__PVRIG|p.T86Pfs*238|1|0.32|ENSG00000213413|chr7:100220245-100220245|G/-|frameshift_variant REV__PVRIG|p.T86Pfs*238|1|0.32|ENSG00000213413|chr7:100220245-100220245|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7686767578125 2 481.768917 961.523281 0.62088 0.00029912 -0.46465 -0.00022385 0.15623 7.5265E-05 481.76862976694764 104.18 0.64606 100.13 99.839 100.49 -4.0543 34 17 3 0 0 0 0.46541 1 20002 20002 21.747 0 1 1555900 + 25020 24535 16437 16443 24769 24769 0.040980714145121055 LAKWYASKRRW 11 Unmodified _LAKWYASKRRW_ 0 0 0 REV__ENST00000553238.5_1_12:113745708-113770716:-|nuORF REV__ENST00000553238.5_1_12:113745708-113770716:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.08154296875 4 366.961023 1463.81499 0.19582 7.1858E-05 -3.9055 -0.0014332 -3.7097 -0.0013613 367.20918068183346 179.22 1.3466 174.35 173.77 175.12 -4.868 64 38 2 0 0 0 0.96227 1 35755 35755 0.094841 0 1 5950400 + 25021 14518 16438 16444 24770 24770 0.10163229499289628 LAKYVTNLGY 10 Unmodified _LAKYVTNLGY_ 0 0 0 tr|U7T262|U7T262_FUSNUN-acetylneuraminatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nanAPE=3SV=1 tr|U7T262|U7T262_FUSNUN-acetylneuraminatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nanAPE=3SV=1 tr|U7T262|U7T262_FUSNUN-acetylneuraminatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nanAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2133483886719 3 381.213246 1140.61791 NaN NaN NaN NaN NaN NaN NaN 51.413 1 48.367 47.867 48.867 -3.0453 0 0 0 0.22588 1 9441 9441 3.8763 1.2451 1 25022 26344 16439 16445 24771 24771 0.053225851658453394 LALALLLWPG 10 Unmodified _LALALLLWPG_ 0 0 0 REV__ENSG00000170893|ENST00000302649|TRH REV__ENSG00000170893|ENST00000302649|TRH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2623291015625 2 533.836603 1065.65865 0.47029 0.00025106 0.29643 0.00015824 0.76672 0.0004093 533.8365697193727 96.099 0.58998 91.903 91.574 92.164 -4.1956 24 16 2 0 0 0 0.91046 1 18396 18396 4.3292 4.3292 1 997530 + 25023 18189 16440 16446 24772 24772 0.1284497127612667 LALALLLWPG 10 Unmodified _LALALLLWPG_ 0 0 0 REV__ENSG00000170893|ENST00000302649|TRH REV__ENSG00000170893|ENST00000302649|TRH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825927734375 2 533.836603 1065.65865 0.038756 2.069E-05 0.93534 0.00049932 0.9741 0.00052001 533.8368780269376 95.87 0.47851 91.989 91.649 92.127 -3.881 23 13 2 0 0 0 0.91046 1 18417 18417 1.8442 0 1 1474400 + 25024 18189 16440 16446 24773 24773 0.1284497127612667 LALALLLWPG 10 Unmodified _LALALLLWPG_ 0 0 0 REV__ENSG00000170893|ENST00000302649|TRH REV__ENSG00000170893|ENST00000302649|TRH MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.836603 1065.65865 -0.077521 -4.1384E-05 0.26524 0.0001416 0.18772 0.00010021 533.8367289641756 91.804 0.56067 91.804 91.496 92.056 0 -0.10701 -6.561E-05 NaN 4.3292 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1494700 + 25025 18189 16440 16446 0.1284497127612667 LALALLLWPG 10 Unmodified _LALALLLWPG_ 0 0 0 REV__ENSG00000170893|ENST00000302649|TRH REV__ENSG00000170893|ENST00000302649|TRH MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 533.836603 1065.65865 0.12892 6.8822E-05 0.18375 9.8091E-05 0.31267 0.00016691 533.8366126199599 95.997 0.51259 91.947 91.678 92.191 -4.0496 0.03629 -0.00015262 NaN 4.3292 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1993700 + 25026 18189 16440 16446 0.1284497127612667 LALAVVGE 8 Unmodified _LALAVVGE_ 0 0 0 REV__nc|ENSG00000151743|Q8IY45-2|AMN1 REV__nc|ENSG00000151743|Q8IY45-2|AMN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 386.1904602050781 2 386.234179 770.453805 NaN NaN NaN NaN NaN NaN NaN 28.226 1 26.269 25.769 26.769 -1.9561 0 0 0 0.23899 1 5042 5042 1.3295 0 1 + 25027 17082 16441 16447 24774 24774 0.0593961246577237 LALEALQAQ 9 Unmodified _LALEALQAQ_ 0 0 0 ENSG00000125741|ENST00000263275|OPA3 ENSG00000125741|ENST00000263275|OPA3 ENSG00000125741|ENST00000263275|OPA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7228088378906 2 478.7742 955.533846 0.076169 3.6468E-05 -0.208 -9.9585E-05 -0.13183 -6.3118E-05 478.7740085838016 37.753 0.44566 35.405 35.132 35.578 -2.3479 18 12 2 0 0 0 0.71527 1 6713 6713 19.257 0 1 1098900 25028 3381 16442 16448 24775 24775 0.0543005406894963 LALFCLHL 8 Unmodified _LALFCLHL_ 0 0 0 REV__ENST00000494655.5_1_3:46966643-47018222:-|nuORF REV__ENST00000494655.5_1_3:46966643-47018222:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.1486511230469 2 465.267499 928.520445 NaN NaN NaN NaN NaN NaN NaN 146.12 1 141 140.5 141.5 -5.1108 0 0 0 0.21022 1 28254 28254 17.087 1.3183 1 + 25029 22368 16443 16449 24776 24776 0.05332524755999657 LALFRCLHA 9 Unmodified _LALFRCLHA_ 0 0 0 REV__nc|ENSG00000135476|Q14674-2|ESPL1 REV__nc|ENSG00000135476|Q14674-2|ESPL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2765502929688 2 522.294579 1042.57461 NaN NaN NaN NaN NaN NaN NaN 145.25 1 145.25 144.75 145.75 0 0 0 0 0.23508 1 29026 29026 11.64 2.2572 1 + 25030 16272 16444 16450 24777 24777 0.05502116907587151 LALHCLFY 8 Unmodified _LALHCLFY_ 0 0 0 REV__ENSG00000237988|ENST00000641137|OR2I1P REV__ENSG00000237988|ENST00000641137|OR2I1P MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2564697265625 2 490.257131 978.499709 NaN NaN NaN NaN NaN NaN NaN 25.831 1 24.196 23.696 24.696 -1.6347 0 0 0 0.21022 1 4263 4263 17.087 0.14425 1 + 25031 19772 16445 16451 24778 24778 0.009599343763397883 LALHCLFY 8 Unmodified _LALHCLFY_ 0 0 0 REV__ENSG00000237988|ENST00000641137|OR2I1P REV__ENSG00000237988|ENST00000641137|OR2I1P MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2761535644531 2 490.257131 978.499709 NaN NaN NaN NaN NaN NaN NaN 70.293 1 66.826 66.326 67.326 -3.467 0 0 0 0.21022 1 13309 13309 17.087 2.2483 1 + 25032 19772 16445 16451 24779 24779 0.009599343763397883 LALHKQLPN 9 Unmodified _LALHKQLPN_ 0 0 0 ENST00000470417.1_1_2:121010459-121047172:+|nuORF ENST00000470417.1_1_2:121010459-121047172:+|nuORF ENST00000470417.1_1_2:121010459-121047172:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.8915710449219 3 345.209948 1032.60801 -0.62181 -0.00021465 0.63883 0.00022053 0.017022 5.8762E-06 345.2101278860763 58.151 0.86147 58.151 57.755 58.617 0 66 24 4 0 0 0 0.25976 1 11158 11158 2.6312 0 1 9267100 25033 10200 16446 16452 24780 24780 0.09301441951151901 LALIIKALKL 10 Unmodified _LALIIKALKL_ 0 0 0 REV__ARMC2|p.L395Yfs*7|1|0.23|ENSG00000118690|chr6:108912387-108912387|T/-|frameshift_variant REV__ARMC2|p.L395Yfs*7|1|0.23|ENSG00000118690|chr6:108912387-108912387|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.939697265625 3 365.933644 1094.7791 NaN NaN NaN NaN NaN NaN NaN 10.482 1 10.482 9.9824 10.982 0 0 0 0 0.22588 1 1314 1314 0.15932 0.15932 1 + 25034 13122 16447 16453 24781 24781 0.23550379269727273 LALILPLGP 9 Unmodified _LALILPLGP_ 0 0 0 ENSG00000095981|ENST00000437525|KCNK16;nc|ENSG00000095981|Q96T55|KCNK16 ENSG00000095981|ENST00000437525|KCNK16 ENSG00000095981|ENST00000437525|KCNK16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7559814453125 2 453.804771 905.59499 0.030241 1.3724E-05 0.35084 0.00015921 0.38109 0.00017294 453.8048551556982 57.929 0.61996 54.724 54.406 55.026 -3.2052 36 17 3 0 0 0 0.88237 1 10836 10836 0.6015 0.6015 1 2533500 25035 1871 16448 16454 24782 24782 0.13841610839040186 LALKILIPVT 10 Unmodified _LALKILIPVT_ 0 0 0 nc|ENSG00000239388|A6NK59|ASB14;ENSG00000239388|ENST00000487349|ASB14 nc|ENSG00000239388|A6NK59|ASB14 nc|ENSG00000239388|A6NK59|ASB14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2603759765625 2 540.873185 1079.73182 NaN NaN NaN NaN NaN NaN NaN 11.876 1 10.755 10.255 11.255 -1.1206 0 0 0 0.22588 1 1379 1379 0.40072 0 1 25036 7834 16449 16455 24783 24783 0.19514099998764323 LALKIYRLARG 11 Unmodified _LALKIYRLARG_ 0 0 0 REV__nc|ENSG00000107938|Q3B7T1-3|EDRF1 REV__nc|ENSG00000107938|Q3B7T1-3|EDRF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2533264160156 3 425.274952 1272.80303 NaN NaN NaN NaN NaN NaN NaN 153.21 1 148.44 147.94 148.94 -4.7684 0 0 0 0.23698 1 30447 30447 0.50596 0 1 + 25037 15101 16450 16456 24784 24784 0.1775361275610976 LALKNIRCR 9 Unmodified _LALKNIRCR_ 0 0 0 ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7919311523438 2 543.83186 1085.64917 NaN NaN NaN NaN NaN NaN NaN 83.818 1 80.119 79.619 80.619 -3.6985 0 0 0 0.21848 1 16007 16007 18.135 3.2967 1 25038 1279 16451 16457 24785 24785 0.10976879718941746 LALLEYKDRL 10 Unmodified _LALLEYKDRL_ 0 0 0 REV__ENSG00000176971|ENST00000318627|FIBIN REV__ENSG00000176971|ENST00000318627|FIBIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 412.21466064453125 3 411.911568 1232.71287 -0.20213 -8.326E-05 -0.17018 -7.01E-05 -0.37231 -0.00015336 411.9115241371254 46.319 0.21133 43.478 43.347 43.558 -2.8409 8 5 2 0 0 0 0.49792 1 8722 8722 3.5927 2.3778 1 726230 + 25039 18531 16452 16458 24786 24786 0.105825186370339 LALLEYKDRL 10 Unmodified _LALLEYKDRL_ 0 0 0 REV__ENSG00000176971|ENST00000318627|FIBIN REV__ENSG00000176971|ENST00000318627|FIBIN MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 411.911568 1232.71287 -0.20213 -8.326E-05 -0.17018 -7.01E-05 -0.37231 -0.00015336 411.9115241371254 46.319 0.21133 43.478 43.347 43.558 -2.8409 0.0036699 -0.00047391 NaN 3.5927 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 726230 + 25040 18531 16452 16458 0.105825186370339 LALLEYKDRL 10 Unmodified _LALLEYKDRL_ 0 0 0 REV__ENSG00000176971|ENST00000318627|FIBIN REV__ENSG00000176971|ENST00000318627|FIBIN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 411.911568 1232.71287 -0.50704 -0.00020886 0.65316 0.00026904 0.14612 6.0188E-05 411.9118695468582 46.337 0.41732 43.47 43.336 43.753 -2.8665 -0.0036699 0.00054353 NaN 3.5927 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 610320 + 25041 18531 16452 16458 0.105825186370339 LALLFSSCN 9 Unmodified _LALLFSSCN_ 0 0 0 REV__SPPL2C|p.P619Lfs*7|1|0.33|ENSG00000185294|chr17:45846757-45846757|C/-|frameshift_variant REV__SPPL2C|p.P619Lfs*7|1|0.33|ENSG00000185294|chr17:45846757-45846757|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.16754150390625 3 323.168761 966.484453 NaN NaN NaN NaN NaN NaN NaN 81.817 1 81.817 81.317 82.317 0 0 0 0 0.23508 1 15940 15940 1.1933 0 1 + 25042 18955 16453 16459 24787 24787 -0.0001297721150876896 LALLFSSCN 9 Unmodified _LALLFSSCN_ 0 0 0 REV__SPPL2C|p.P619Lfs*7|1|0.33|ENSG00000185294|chr17:45846757-45846757|C/-|frameshift_variant REV__SPPL2C|p.P619Lfs*7|1|0.33|ENSG00000185294|chr17:45846757-45846757|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.16925048828125 3 323.168761 966.484453 NaN NaN NaN NaN NaN NaN NaN 88.96 1 85.167 84.667 85.667 -3.7926 0 0 0 0.23508 1 17405 17405 1.1933 0 1 + 25043 18955 16453 16459 24788 24788 -0.0001297721150876896 LALLGVLPD 9 Unmodified _LALLGVLPD_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant;ENST00000572426.5_1_17:3937307-3974023:-|nuORF;nc|ENSG00000074755|O43149-2|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 456.7805480957031 2 455.784036 909.553519 0.072202 3.2909E-05 0.16376 7.4637E-05 0.23596 0.00010755 455.784029264998 159.88 1.3478 155.08 154.44 155.79 -4.7952 94 37 3 0 0 0 0.27705 2 31814 31814;31858 2.6312 0 1 10753000 25044 1503 16454 16460 24789;24790 24789 0.09512430079701062 LALLLFLYTL 10 Unmodified _LALLLFLYTL_ 0 0 0 SLC47A1|p.I235T|1|0.12|ENSG00000142494|chr17:19555655-19555655|T/C|missense_variant SLC47A1|p.I235T|1|0.12|ENSG00000142494|chr17:19555655-19555655|T/C|missense_variant SLC47A1|p.I235T|1|0.12|ENSG00000142494|chr17:19555655-19555655|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2600708007812 2 590.373018 1178.73148 NaN NaN NaN NaN NaN NaN NaN 130.68 1 125.91 125.41 126.41 -4.7725 0 0 0 0.22588 1 25155 25155 7.2892 1.0834 1 25045 25688 16455 16461 24791 24791 0.14926680278881577 LALLLLLLPPQ 11 Unmodified _LALLLLLLPPQ_ 0 0 0 REV__ENSG00000228300|ENST00000409293|FAM174C REV__ENSG00000228300|ENST00000409293|FAM174C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.29931640625 2 602.407392 1202.80023 NaN NaN NaN NaN NaN NaN NaN 139.43 1 134.79 134.29 135.29 -4.6439 0 0 0 0.23698 1 27525 27525 1.0715 0.5467 1 + 25046 19735 16456 16462 24792 24792 0.20694344578600976 LALLLVAYLKK 11 Unmodified _LALLLVAYLKK_ 0 0 0 REV__tr|U7SQV2|U7SQV2_FUSNUPeptidoglycan-associatedlipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01810PE=4SV=1 REV__tr|U7SQV2|U7SQV2_FUSNUPeptidoglycan-associatedlipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01810PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7733764648438 2 622.920667 1243.82678 NaN NaN NaN NaN NaN NaN NaN 169.82 1 169.82 169.32 170.32 0 0 0 0 0.22632 1 34875 34875 0.026206 0 1 + 25047 25018 16457 16463 24793 24793 0.21462033469902053 LALLLVAYLKK 11 Unmodified _LALLLVAYLKK_ 0 0 0 REV__tr|U7SQV2|U7SQV2_FUSNUPeptidoglycan-associatedlipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01810PE=4SV=1 REV__tr|U7SQV2|U7SQV2_FUSNUPeptidoglycan-associatedlipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01810PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7680053710938 2 622.920667 1243.82678 NaN NaN NaN NaN NaN NaN NaN 71.365 1 67.898 67.398 68.398 -3.467 0 0 0 0.22632 1 13525 13525 0 0 1 + 25048 25018 16457 16463 24794 24794 0.21462033469902053 LALLRRLF 8 Unmodified _LALLRRLF_ 0 0 0 REV__ENST00000588451.1_1_6:170151963-170154006:+|nuORF REV__ENST00000588451.1_1_6:170151963-170154006:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 501.3328857421875 2 501.334562 1000.65457 NaN NaN NaN NaN NaN NaN NaN 163.19 1 158.4 157.9 158.9 -4.7898 0 0 0 0.23294 1 32518 32518 0.12286 0 1 + 25049 23295 16458 16464 24795 24795 0.15426926573070432 LALQERSL 8 Unmodified _LALQERSL_ 0 0 0 REV__ENST00000486327.6_1_19:47870378-47879405:+|nuORF REV__ENST00000486327.6_1_19:47870378-47879405:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2400207519531 2 465.274367 928.53418 -0.022735 -1.0578E-05 0.082782 3.8516E-05 0.060047 2.7938E-05 465.27434736568927 97.196 0.73302 93.098 92.839 93.572 -4.0978 32 20 2 0 0 0 0.23433 1 19124 19124 42.095 2.1372 1 4625200 + 25050 16230 16459 16465 24796 24796 0.06705473788792915 LALRLYECL 9 Unmodified _LALRLYECL_ 0 0 0 ENST00000314028.10_1_17:80201520-80201643:-|nuORF ENST00000314028.10_1_17:80201520-80201643:-|nuORF ENST00000314028.10_1_17:80201520-80201643:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7669677734375 2 547.307352 1092.60015 0.096132 5.2614E-05 2.5552 0.0013985 2.6514 0.0014511 547.3087820483482 138.64 0.20906 133.68 133.53 133.74 -4.952 6 5 2 0 0 0 0.74655 1 26670 26670 15.847 0 1 1521200 25051 8667 16460 16466 24797 24797 0.05755546639329623 LALSPDEE 8 Unmodified _LALSPDEE_ 0 0 0 ENST00000549030.1_1_14:105856139-105857603:+|nuORF ENST00000549030.1_1_14:105856139-105857603:+|nuORF ENST00000549030.1_1_14:105856139-105857603:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2151184082031 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 127.96 1 123.14 122.64 123.64 -4.817 0 0 0 0.21181 1 24562 24562 15.768 1.1865 1 25052 11157 16461 16467 24798 24798 -0.028581933643863522 LALSPQQSA 9 Unmodified _LALSPQQSA_ 0 0 0 ENSG00000226887|ENST00000443173|ERVMER34-1 ENSG00000226887|ENST00000443173|ERVMER34-1 ENSG00000226887|ENST00000443173|ERVMER34-1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23126220703125 2 457.750724 913.486896 0.64566 0.00029555 0.10202 4.6701E-05 0.74769 0.00034225 457.75067858810195 23.036 0.63545 21.483 21.198 21.834 -1.5532 44 17 4 0 0 0 0.73268 1 3930 3930 24.021 1.2843 1 10161000 25053 7794 16462 16468 24799 24799 0.026691945178072274 LALVKRLKPL 10 Unmodified _LALVKRLKPL_ 0 0 0 ENSG00000003056|ENST00000000412|M6PR;ENST00000540837.1_12:9097984-9102109:-|nuORF ENSG00000003056|ENST00000000412|M6PR ENSG00000003056|ENST00000000412|M6PR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3204345703125 2 575.905351 1149.79615 0.20592 0.00011859 4.4696 0.0025741 4.6756 0.0026927 575.9091416810498 145.94 0.35141 140.83 140.76 141.11 -5.1108 11 9 2 0 0 0 0.91149 1 28214 28214 1.8442 0 1 1945700 25054 967 16463 16469 24800 24800 0.22724299875562792 LALVPCFLWVL 11 Unmodified _LALVPCFLWVL_ 0 0 0 ENST00000526683.5_1_8:144898636-144898693:-|nuORF ENST00000526683.5_1_8:144898636-144898693:-|nuORF ENST00000526683.5_1_8:144898636-144898693:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2511901855469 3 425.250756 1272.73044 NaN NaN NaN NaN NaN NaN NaN 162.29 1 157.1 156.6 157.6 -5.1878 0 0 0 0.23594 1 31508 31508 1.4551 0 1 25055 10918 16464 16470 24801 24801 0.10498142638334684 LALVSWDI 8 Unmodified _LALVSWDI_ 0 0 0 ENST00000479445.1_1_X:100656533-100662864:-|nuORF;GLA|p.K240Efs*9|1|0.63|ENSG00000102393|chrX:101398867-101398868|TT/-|frameshift_variant;GLA|p.G261Vfs*8|1|0.21|ENSG00000102393|chrX:101398804-101398804|C/-|frameshift_variant;ENSG00000102393|ENST00000218516|GLA ENST00000479445.1_1_X:100656533-100662864:-|nuORF ENST00000479445.1_1_X:100656533-100662864:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.238037109375 2 458.760561 915.506569 0.15786 7.242E-05 0.083813 3.845E-05 0.24167 0.00011087 458.7606175849269 129 0.63092 124.26 123.94 124.57 -4.7408 22 17 2 0 0 0 0.83439 1 24810 24810 20.871 1.4322 1 1289900 25056 2130 16465 16471 24802 24802 0.04543570528562668 LALYRGPK 8 Unmodified _LALYRGPK_ 0 0 0 ENST00000579991.2_1_17:56166528-56166822:+|nuORF ENST00000579991.2_1_17:56166528-56166822:+|nuORF ENST00000579991.2_1_17:56166528-56166822:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.2510070800781 3 306.523755 916.549437 -1.592 -0.00048799 1.5068 0.00046186 -0.085255 -2.6133E-05 306.5242808460847 20.193 0.51987 18.557 18.261 18.781 -1.6351 29 14 3 0 0 0 0.86089 1 3061 3061 1.6526 0 1 1461200 25057 11488 16466 16472 24803 24803 0.08782385376662205 LAMARALNS 9 Unmodified _LAMARALNS_ 0 0 0 REV__ENST00000335420.9_1_7:129774287-129774428:+|nuORF REV__ENST00000335420.9_1_7:129774287-129774428:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1756286621094 3 316.176138 945.506586 NaN NaN NaN NaN NaN NaN NaN 12.951 1 11.831 11.331 12.331 -1.1206 0 0 0 0.23508 1 1591 1591 0.96228 0.26461 1 + 25058 20654 16467 16473 24804 24804 0.03165247256924886 LAMWGPQA 8 Unmodified _LAMWGPQA_ 0 0 0 nc|ENSG00000159714|Q8WTX9|ZDHHC1 nc|ENSG00000159714|Q8WTX9|ZDHHC1 nc|ENSG00000159714|Q8WTX9|ZDHHC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21722412109375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 60.447 1 57.514 57.014 58.014 -2.9333 0 0 0 0.21486 1 11631 11631 9.3474 2.9933 1 25059 12403 16468 16474 24805 24805 -0.01985498208887293 LANCVAPW 8 Unmodified _LANCVAPW_ 0 0 0 ENSG00000149742|ENST00000279178|SLC22A9;ENSG00000196600|ENST00000306494|SLC22A25 ENSG00000149742|ENST00000279178|SLC22A9;ENSG00000196600|ENST00000306494|SLC22A25 ENSG00000196600|ENST00000306494|SLC22A25 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22833251953125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 89.467 1 85.607 85.107 86.107 -3.8595 0 0 0 0.23711 1 17508 17508 0.62683 0.50396 1 25060 4808;7290 16469 16475 24806 24806 -0.019854982088986617 LANEYKEIFWE 11 Unmodified _LANEYKEIFWE_ 0 0 0 REV__tr|U7SKP6|U7SKP6_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02099PE=4SV=1 REV__tr|U7SKP6|U7SKP6_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02099PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.236083984375 3 481.23812 1440.69253 NaN NaN NaN NaN NaN NaN NaN 21.073 1 19.351 18.851 19.851 -1.7211 0 0 0 0.22632 1 3275 3275 0.00056442 0 1 + 25061 24934 16470 16476 24807 24807 -0.010186968134348717 LANEYKEIFWE 11 Unmodified _LANEYKEIFWE_ 0 0 0 REV__tr|U7SKP6|U7SKP6_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02099PE=4SV=1 REV__tr|U7SKP6|U7SKP6_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02099PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2366943359375 3 481.23812 1440.69253 NaN NaN NaN NaN NaN NaN NaN 89.175 1 85.425 84.925 85.925 -3.7501 0 0 0 0.22632 1 17077 17077 0.11104 0.084836 1 + 25062 24934 16470 16476 24808 24808 -0.010186968134348717 LANFVNNRF 9 Unmodified _LANFVNNRF_ 0 0 0 REV__tr|U7T719|U7T719_FUSNUPhagetailtapemeasureprotein,TP901family,coreregionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00086PE=4SV=1 REV__tr|U7T719|U7T719_FUSNUPhagetailtapemeasureprotein,TP901family,coreregionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00086PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7896728515625 2 547.790715 1093.56688 NaN NaN NaN NaN NaN NaN NaN 161.16 1 155.91 155.41 156.41 -5.2526 0 0 0 0.23508 1 31275 31275 12.532 1.7076 1 + 25063 25459 16471 16477 24809 24809 0.02383680911657393 LANKEKNY 8 Unmodified _LANKEKNY_ 0 0 0 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2652893066406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 82.728 1 78.855 78.355 79.355 -3.8736 0 0 0 0.22847 1 15714 15714 3.5871 1.8952 1 25064 6174 16472 16478 24810 24810 0.023328834091330464 LANLWHRL 8 Unmodified _LANLWHRL_ 0 0 0 ENST00000547526.1_1_12:57910914-57914246:-|nuORF ENST00000547526.1_1_12:57910914-57914246:-|nuORF ENST00000547526.1_1_12:57910914-57914246:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 511.4094543457031 2 511.798343 1021.58213 NaN NaN NaN NaN NaN NaN NaN 163.29 1 158.5 158 159 -4.7898 0 0 0 0.21486 1 32544 32544 9.3474 0 1 25065 11141 16473 16479 24811 24811 0.0722059249949325 LANVNPTSI 9 Unmodified _LANVNPTSI_ 0 0 0 REV__ENSG00000113583|ENST00000231512|C5orf15 REV__ENSG00000113583|ENST00000231512|C5orf15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.239501953125 2 464.758549 927.502546 -0.022959 -1.067E-05 -0.23337 -0.00010846 -0.25633 -0.00011913 464.75847120553294 140.52 0.64331 135.88 135.48 136.12 -4.6493 35 17 3 0 0 0 0.41781 1 27678 27678 24.674 7.7316 1 4404000 + 25066 15349 16474 16480 24812 24812 0.03589481034862274 LAPDDRIY 8 Unmodified _LAPDDRIY_ 0 0 0 REV__ENSG00000104941|ENST00000221538|RSPH6A REV__ENSG00000104941|ENST00000221538|RSPH6A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25018310546875 2 481.750724 961.486896 0.43376 0.00020896 -0.32192 -0.00015509 0.11184 5.3877E-05 481.75048005001884 115.52 0.77977 111.21 110.83 111.61 -4.3136 35 21 2 0 0 0 0.95284 1 22181 22181 9.3474 0 1 2679800 + 25067 14952 16475 16481 24813 24813 0.004611945177884991 LAPDIHHL 8 Unmodified _LAPDIHHL_ 0 0 0 REV__ENST00000490780.5_1_1:111668264-111674185:-|nuORF REV__ENST00000490780.5_1_1:111668264-111674185:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2223815917969 2 458.255977 914.497401 0.62128 0.00028471 -0.37025 -0.00016967 0.25104 0.00011504 458.25584979006436 110.61 0.84381 106.38 106.06 106.9 -4.2289 27 23 2 0 0 0 0.69887 1 21228 21228 14.582 2.9414 1 1251000 + 25068 17249 16476 16482 24814 24814 0.03673221962901607 LAPEMGEE 8 Unmodified _LAPEMGEE_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 439.197509765625 2 438.194393 874.374234 0.11018 4.8279E-05 0.61243 0.00026836 0.72261 0.00031664 438.19459055236155 153.69 0.83087 148.43 148.09 148.92 -5.2669 42 23 3 0 0 0 8448 1 29827 29827 0.063987 0 1 3740800 25069 5723 16477 16483 24815 24815 -0.067978222705392 LAPEMGEE 8 Unmodified _LAPEMGEE_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 438.194393 874.374234 0.17369 7.6111E-05 0.70096 0.00030716 0.87465 0.00038327 438.1946466787361 148.58 0.73297 148.58 148.09 148.82 0 0.12797 5.2832E-06 NaN 0.063987 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 3236700 25070 5723 16477 16483 -0.067978222705392 LAPEMGEE 8 Unmodified _LAPEMGEE_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 438.194393 874.374234 -0.0014607 -6.4007E-07 0.74922 0.0003283 0.74776 0.00032766 438.19465061844994 153.15 0.60899 148.39 148.15 148.76 -4.7684 -0.069864 4.7578E-05 NaN 0.063987 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3050100 25071 5723 16477 16483 -0.067978222705392 LAPEMGEE 8 Unmodified _LAPEMGEE_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 438.194393 874.374234 0.11018 4.8279E-05 0.61243 0.00026836 0.72261 0.00031664 438.19459055236155 153.69 0.83087 148.43 148.09 148.92 -5.2669 -0.029368 -7.2303E-05 NaN 0.063987 42 23 3 NaN NaN NaN NaN 0 NaN NaN 0 3740800 25072 5723 16477 16483 -0.067978222705392 LAPEMGEE 8 Unmodified _LAPEMGEE_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 438.194393 874.374234 0.21668 9.4947E-05 0.73228 0.00032088 0.94896 0.00041583 438.19462386377063 153.65 0.79808 148.43 148.11 148.91 -5.2209 -0.028743 3.2731E-05 NaN 0.063987 35 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1800900 25073 5723 16477 16483 -0.067978222705392 LAPETILV 8 Unmodified _LAPETILV_ 0 0 0 REV__ACTRT3|p.N293Tfs*16|1|0.08|ENSG00000184378|chr3:169767673-169767674|-/CAGTG|frameshift_variant REV__ACTRT3|p.N293Tfs*16|1|0.08|ENSG00000184378|chr3:169767673-169767674|-/CAGTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 428.1529846191406 2 428.262936 854.51132 NaN NaN NaN NaN NaN NaN NaN 154.03 1 148.81 148.31 149.31 -5.2209 0 0 0 0.21486 1 29858 29858 0.79363 0 1 + 25074 12931 16478 16484 24816 24816 0.07824454671344938 LAPFKKLI 8 Unmodified _LAPFKKLI_ 0 0 0 REV__ENST00000368654.7_1_10:129914037-129921160:-|nuORF REV__ENST00000368654.7_1_10:129914037-129921160:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2483215332031 2 465.312764 928.610974 0.12908 6.0061E-05 -0.18193 -8.4656E-05 -0.052858 -2.4596E-05 465.3126213775906 59.636 0.52388 56.412 56.15 56.674 -3.2237 20 14 2 0 0 0 0.89848 1 11170 11170 0.30703 0 1 1067000 + 25075 20942 16479 16485 24817 24817 0.1438131707593584 LAPGHARK 8 Unmodified _LAPGHARK_ 0 0 0 REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25555419921875 2 425.256311 848.49807 NaN NaN NaN NaN NaN NaN NaN 45.251 1 45.251 44.751 45.751 0 0 0 0 0.21486 1 8503 8503 5.7604 2.8712 1 + 25076 18928 16480 16486 24818 24818 0.06776061402615596 LAPHKRYLG 9 Unmodified _LAPHKRYLG_ 0 0 0 sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1;sp|F5HDQ6|DNBI_HCMVMMajorDNA-bindingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=DBPPE=3SV=1 sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1 sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 352.5418701171875 3 352.210059 1053.60835 NaN NaN NaN NaN NaN NaN NaN 54.25 1 51.367 50.867 51.867 -2.8837 0 0 0 0.19657 1 10349 10349 0.029283 0 1 25077 25731 16481 16487 24819 24819 0.08368861670965089 LAPKKKPRK 9 Unmodified _LAPKKKPRK_ 0 0 0 nc|ENSG00000173068|Q6ZN30-2|BNC2;ENSG00000173068|ENST00000380672|BNC2 nc|ENSG00000173068|Q6ZN30-2|BNC2 nc|ENSG00000173068|Q6ZN30-2|BNC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2705688476562 2 533.366393 1064.71823 NaN NaN NaN NaN NaN NaN NaN 163.06 1 163.06 162.56 163.56 0 0 0 0 0.19636 1 32834 32834 2.4985 0 1 25078 6262 16482 16488 24820 24820 0.18846287010160268 LAPLDILQP 9 Unmodified _LAPLDILQP_ 0 0 0 ZNF416|p.G185D|1|0.28|ENSG00000083817|chr19:57573350-57573350|C/T|missense_variant ZNF416|p.G185D|1|0.28|ENSG00000083817|chr19:57573350-57573350|C/T|missense_variant ZNF416|p.G185D|1|0.28|ENSG00000083817|chr19:57573350-57573350|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2655029296875 2 490.294768 978.574983 NaN NaN NaN NaN NaN NaN NaN 144.55 1 144.55 144.05 145.05 0 0 0 0 0.22251 1 28882 28882 16.942 3.4344 1 25079 26617 16483 16489 24821 24821 0.084838151084341 LAPLKLVRH 9 Unmodified _LAPLKLVRH_ 0 0 0 CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant;ENSG00000173546|ENST00000308508|CSPG4 CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6942749023438 2 523.845294 1045.67603 NaN NaN NaN NaN NaN NaN NaN 160.73 1 160.73 160.23 161.23 0 0 0 0 0.19632 1 32275 32275 0.073264 0.073264 1 25080 733 16484 16490 24822 24822 0.15502311601790097 LAPLLRILI 9 Unmodified _LAPLLRILI_ 0 0 0 tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.24407958984375 3 341.242589 1020.70594 NaN NaN NaN NaN NaN NaN NaN 138 1 138 137.5 138.5 0 0 0 0 0.23508 1 27389 27389 1.1933 0.92432 1 25081 26272 16485 16491 24823 24823 0.1964125054713577 LAPLLRILI 9 Unmodified _LAPLLRILI_ 0 0 0 tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.2419738769531 3 341.242589 1020.70594 NaN NaN NaN NaN NaN NaN NaN 142.17 1 137.52 137.02 138.02 -4.656 0 0 0 0.23508 1 28098 28098 1.1933 0.92432 1 25082 26272 16485 16491 24824 24824 0.1964125054713577 LAPLQSLEP 9 Unmodified _LAPLQSLEP_ 0 0 0 REV__LMTK2|p.T590P|1|0.2|ENSG00000164715|chr7:98192233-98192233|A/C|missense_variant REV__LMTK2|p.T590P|1|0.2|ENSG00000164715|chr7:98192233-98192233|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1679382324219 3 323.186809 966.538597 NaN NaN NaN NaN NaN NaN NaN 84.558 1 80.894 80.394 81.394 -3.6641 0 0 0 0.23508 1 16528 16528 2.7352 0 1 + 25083 23801 16486 16492 24825 24825 0.053989382117038076 LAPLSLHSRS 10 Unmodified _LAPLSLHSRS_ 0 0 0 ENST00000233813.4_1_2:217559507-217559828:-|nuORF ENST00000233813.4_1_2:217559507-217559828:-|nuORF ENST00000233813.4_1_2:217559507-217559828:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2747802734375 2 540.811648 1079.60874 0.11777 6.369E-05 -0.55749 -0.0003015 -0.43972 -0.00023781 540.8112833839847 88.427 0.64362 84.635 84.339 84.983 -3.7926 38 17 3 0 0 0 0.87854 1 17295 17295 13.906 1.6654 1 4100200 25084 8165 16487 16493 24826 24826 0.07212236600162214 LAPLYLMEG 9 Unmodified _LAPLYLMEG_ 0 0 0 REV__ENSG00000243789|ENST00000397299|JMJD7 REV__ENSG00000243789|ENST00000397299|JMJD7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.1398620605469 3 336.180778 1005.5205 NaN NaN NaN NaN NaN NaN NaN 100.36 1 96.062 95.562 96.562 -4.297 0 0 0 0.23508 1 19194 19194 1.1933 0 1 + 25085 19803 16488 16494 24827 24827 0.01796479965355502 LAPPPPTSA 9 Unmodified _LAPPPPTSA_ 0 0 0 nc|ENSG00000171475|Q8TF74-2|WIPF2;WIPF2|p.P372Lfs*7|1|0.22|ENSG00000171475|chr17:40273930-40273930|C/-|frameshift_variant;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF nc|ENSG00000171475|Q8TF74-2|WIPF2 nc|ENSG00000171475|Q8TF74-2|WIPF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25555419921875 2 425.737086 849.459619 0.41253 0.00017563 -0.1045 -4.4489E-05 0.30804 0.00013114 425.73701128343816 45.313 1.0148 45.313 44.849 45.864 0 50 28 2 0 0 0 0.11864 1 8503 8503 53.576 6.6547 1 2044000 25086 6146 16489 16495 24828 24828 0.02886710977418261 LAPPPPTSA 9 Unmodified _LAPPPPTSA_ 0 0 0 nc|ENSG00000171475|Q8TF74-2|WIPF2;WIPF2|p.P372Lfs*7|1|0.22|ENSG00000171475|chr17:40273930-40273930|C/-|frameshift_variant;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF nc|ENSG00000171475|Q8TF74-2|WIPF2 nc|ENSG00000171475|Q8TF74-2|WIPF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 426.2467041015625 2 425.737086 849.459619 -0.23637 -0.00010063 0.41183 0.00017533 0.17546 7.4699E-05 425.737214030705 48.488 1.4828 45.619 44.91 46.392 -2.869 74 41 2 0 0 0 0.19983 1 9188 9188 10.899 9.6841 1 2779200 25087 6146 16489 16495 24829 24829 0.02886710977418261 LAPPPPTSA 9 Unmodified _LAPPPPTSA_ 0 0 0 nc|ENSG00000171475|Q8TF74-2|WIPF2;WIPF2|p.P372Lfs*7|1|0.22|ENSG00000171475|chr17:40273930-40273930|C/-|frameshift_variant;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF nc|ENSG00000171475|Q8TF74-2|WIPF2 nc|ENSG00000171475|Q8TF74-2|WIPF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2549133300781 2 425.737086 849.459619 -0.35061 -0.00014927 0.57027 0.00024278 0.21965 9.3514E-05 425.7372458960186 48.589 1.3163 45.639 45.086 46.402 -2.9499 67 37 2 0 0 0 0.43406 1 8844 8844 38.151 13.477 1 2213400 25088 6146 16489 16495 24830 24830 0.02886710977418261 LAPQKGGV 8 Unmodified _LAPQKGGV_ 0 0 0 ENST00000485767.1_1_9:124072835-124073156:+|nuORF ENST00000485767.1_1_9:124072835-124073156:+|nuORF ENST00000485767.1_1_9:124072835-124073156:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 385.1750793457031 2 385.231971 768.449388 NaN NaN NaN NaN NaN NaN NaN 95.872 1 95.872 95.372 96.372 0 0 0 0 0.21486 1 18779 18779 0.79363 0 1 25089 10443 16490 16496 24831 24831 0.05590148042870169 LAPSHHDP 8 Unmodified _LAPSHHDP_ 0 0 0 REV__AADACL4|p.D384*|1|0.15|ENSG00000204518|chr1:12666654-12666655|-/T|frameshift_variant REV__AADACL4|p.D384*|1|0.15|ENSG00000204518|chr1:12666654-12666655|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21527099609375 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 127.8 0.99999 123.18 122.68 123.68 -4.6172 0 0 0 0.21323 1 25201 25201 14.582 4.3983 1 + 25090 12877 16491 16497 24832 24832 -0.027245144849530334 LAPSTRLRTH 10 Unmodified _LAPSTRLRTH_ 0 0 0 REV__nc|ENSG00000143702|Q5SW79-3|CEP170 REV__nc|ENSG00000143702|Q5SW79-3|CEP170 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3275756835938 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 135.59 1 130.95 130.45 131.45 -4.6399 0 0 0 0.22588 1 26745 26745 8.1555 0 1 + 25091 16746 16492 16498 24833 24833 0.08778730240078403 LAPTLQPGRQ 10 Unmodified _LAPTLQPGRQ_ 0 0 0 PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2744140625 2 540.811648 1079.60874 0.2851 0.00015419 -1.0166 -0.00054979 -0.7315 -0.0003956 540.8110000143057 88.51 0.52275 84.76 84.573 85.096 -3.7501 25 14 2 0 0 0 0.87854 1 16939 16939 13.906 1.6654 1 5479600 25092 12794 16493 16499 24834 24834 0.07212236600184951 LAPVAHGP 8 Unmodified _LAPVAHGP_ 0 0 0 REV__ENST00000311124.8_1_21:46935136-46935547:-|nuORF REV__ENST00000311124.8_1_21:46935136-46935547:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2203674316406 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 143.54 1 143.54 143.04 144.04 0 0 0 0 0.21486 1 28646 28646 2.8892 0 1 + 25093 20488 16494 16500 24835 24835 0.033378788713775975 LAPVAHGP 8 Unmodified _LAPVAHGP_ 0 0 0 REV__ENST00000311124.8_1_21:46935136-46935547:-|nuORF REV__ENST00000311124.8_1_21:46935136-46935547:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21893310546875 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 153.59 1 148.32 147.82 148.82 -5.2669 0 0 0 0.21486 1 29773 29773 2.8892 0 1 + 25094 20488 16494 16500 24836 24836 0.033378788713775975 LAQEERQL 8 Unmodified _LAQEERQL_ 0 0 0 WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 493.74365234375 2 493.766906 985.519259 NaN NaN NaN NaN NaN NaN NaN 127.56 1 127.56 127.06 128.06 0 0 0 0 0.21452 1 25179 25179 13.508 0.97634 1 25095 6172 16495 16501 24837 24837 0.025919819208070294 LAQEKDTI 8 Unmodified _LAQEKDTI_ 0 0 0 ENST00000430308.1_1_13:22105114-22105396:+|nuORF ENST00000430308.1_1_13:22105114-22105396:+|nuORF ENST00000430308.1_1_13:22105114-22105396:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2452392578125 2 459.250557 916.486562 0.50973 0.0002341 0.075091 3.4486E-05 0.58483 0.00026858 459.25047015238073 102.37 0.86805 98.348 97.902 98.77 -4.0212 56 24 3 0 0 0 0.70613 1 19711 19711 13.508 0.97634 1 3563600 25096 9772 16496 16502 24838 24838 0.024977747979505693 LAQESVNSL 9 Unmodified _LAQESVNSL_ 0 0 0 REV__ENST00000332687.10_1_X:73834376-73834442:-|nuORF REV__ENST00000332687.10_1_X:73834376-73834442:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2499694824219 2 480.753464 959.492375 -0.1739 -8.3604E-05 0.13082 6.289E-05 -0.043086 -2.0714E-05 480.75456102060707 90.42 0.24836 90.42 90.259 90.507 0 9 6 2 0 0 0 0.23959 1 17677 17677 6.4869 0 1 1011500 + 25097 20630 16497 16503 24839 24839 0.011008733096218748 LAQESVNSL 9 Unmodified _LAQESVNSL_ 0 0 0 REV__ENST00000332687.10_1_X:73834376-73834442:-|nuORF REV__ENST00000332687.10_1_X:73834376-73834442:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.753464 959.492375 0.047521 2.2846E-05 0.44809 0.00021542 0.49561 0.00023826 480.7539474191819 94.228 0.27752 90.237 90.071 90.348 -3.9907 -0.0912 3.2834E-05 NaN 6.4869 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 500390 + 25098 20630 16497 16503 0.011008733096218748 LAQGELWL 8 Unmodified _LAQGELWL_ 0 0 0 ENST00000466860.5_1_1:12089781-12089952:+|nuORF;ENST00000498685.5_1_1:12089781-12091862:+|nuORF ENST00000466860.5_1_1:12089781-12089952:+|nuORF ENST00000466860.5_1_1:12089781-12089952:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25872802734375 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 116.42 1 111.84 111.34 112.34 -4.5815 0 0 0 0.21486 1 22340 22340 5.7604 0 1 25099 10140 16498 16504 24840 24840 0.03470686385821864 LAQGWSLY 8 Unmodified _LAQGWSLY_ 0 0 0 REV__ENSG00000180801|ENST00000315366|ARSJ REV__ENSG00000180801|ENST00000315366|ARSJ MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.21240234375 3 313.164116 936.470518 NaN NaN NaN NaN NaN NaN NaN 61.112 1 58.179 57.679 58.679 -2.9333 0 0 0 0.21486 1 11772 11772 3.9444 1.2092 1 + 25100 18698 16499 16505 24841 24841 -0.00025886648290907033 LAQGWSLY 8 Unmodified _LAQGWSLY_ 0 0 0 REV__ENSG00000180801|ENST00000315366|ARSJ REV__ENSG00000180801|ENST00000315366|ARSJ MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.1619873046875 3 313.164116 936.470518 NaN NaN NaN NaN NaN NaN NaN 74.448 1 70.771 70.271 71.271 -3.6764 0 0 0 0.21486 1 14076 14076 3.9444 1.2092 1 + 25101 18698 16499 16505 24842 24842 -0.00025886648290907033 LAQHYLIFLLY 11 Unmodified _LAQHYLIFLLY_ 0 0 0 REV__nc|ENSG00000115339|Q14435-2|GALNT3 REV__nc|ENSG00000115339|Q14435-2|GALNT3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2408447265625 3 465.267463 1392.78056 NaN NaN NaN NaN NaN NaN NaN 19.8 1 18.165 17.665 18.665 -1.6351 0 0 0 0.22632 1 3009 3009 1.4551 1.4492 1 + 25102 24007 16500 16506 24843 24843 0.09987968567838834 LAQLDEDDQ 9 Unmodified _LAQLDEDDQ_ 0 0 0 REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6963500976562 2 523.735468 1045.45638 NaN NaN NaN NaN NaN NaN NaN 147.44 1 142.38 141.88 142.88 -5.0595 0 0 0 0.19652 1 28542 28542 0.029283 0 1 + 25103 19075 16501 16507 24844 24844 -0.06452628657916648 LAQLSPKPLP 10 Unmodified _LAQLSPKPLP_ 0 0 0 REV__ENSG00000088053|ENST00000310373|GP6 REV__ENSG00000088053|ENST00000310373|GP6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 355.22265625 3 355.221853 1062.64373 NaN NaN NaN NaN NaN NaN NaN 67.04 1 63.543 63.043 64.043 -3.4965 0 0 0 2.8426 1 12574 12574 0.063865 0 1 + 25104 14508 16502 16508 24845 24845 0.11491479408141458 LAQMSNFGLN 10 Unmodified _LAQMSNFGLN_ 0 0 0 REV__MXRA5|p.I67M|1|0.89|ENSG00000101825|chrX:3330761-3330761|T/C|missense_variant REV__MXRA5|p.I67M|1|0.89|ENSG00000101825|chrX:3330761-3330761|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7672119140625 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 72.464 1 72.464 71.964 72.964 0 0 0 0 0.22535 1 14052 14052 20.415 2.2682 1 + 25105 23893 16503 16509 24846 24846 -0.020390912968196062 LAQPCERL 8 Unmodified _LAQPCERL_ 0 0 0 ENST00000602806.1_1_1:226271560-226274609:+|nuORF ENST00000602806.1_1_1:226271560-226274609:+|nuORF ENST00000602806.1_1_1:226271560-226274609:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2470397949219 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 154.5 1 149.21 148.71 149.71 -5.2854 0 0 0 0.21486 1 29959 29959 6.3541 0 1 25106 11717 16504 16510 24847 24847 0.012935583655803384 LAQQKVVM 8 Unmodified _LAQQKVVM_ 0 0 0 ENST00000582848.5_1_17:7476159-7480015:+|nuORF ENST00000582848.5_1_17:7476159-7480015:+|nuORF ENST00000582848.5_1_17:7476159-7480015:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23883056640625 2 458.767863 915.521173 -0.0737 -3.3811E-05 0.56886 0.00026097 0.49516 0.00022716 458.7678218136098 112.36 0.52172 107.84 107.52 108.04 -4.5259 26 14 2 0 0 0 0.96284 1 21507 21507 19.439 0 1 1266500 25107 11511 16505 16511 24848 24848 0.060033194050674865 LAQRHDRRRLL 11 Unmodified _LAQRHDRRRLL_ 0 0 0 REV__ENST00000308278.12_1_17:635940-641136:+|nuORF REV__ENST00000308278.12_1_17:635940-641136:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7376708984375 3 478.623525 1432.84875 NaN NaN NaN NaN NaN NaN NaN 160.36 1 160.36 159.86 160.86 0 0 0 0 0.23698 1 32202 32202 1.4551 0.75745 1 + 25108 20461 16506 16512 24849 24849 0.14963650991057875 LAQSLSSLP 9 Unmodified _LAQSLSSLP_ 0 0 0 REV__ENST00000394833.6_1_4:103265916-103266270:-|nuORF REV__ENST00000394833.6_1_4:103265916-103266270:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2383117675781 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 91.54 1 87.615 87.115 88.115 -3.9251 0 0 0 0.22621 1 17919 17919 15.847 1.2655 1 + 25109 21252 16507 16513 24850 24850 0.046623651776371844 LAQTNEEKI 9 Unmodified _LAQTNEEKI_ 0 0 0 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7008056640625 2 523.279846 1044.54514 -0.2279 -0.00011925 -0.87339 -0.00045703 -1.1013 -0.00057628 523.2795620194197 44.505 0.66956 41.715 41.425 42.095 -2.79 30 18 2 0 0 0 0.35429 1 8357 8357 28.495 1.6109 1 1194300 25110 6363 16508 16514 24851 24851 0.02464831372435583 LAQTQLPA 8 Unmodified _LAQTQLPA_ 0 0 0 REV__ACTL7A|p.G363Afs*16|1|0.28|ENSG00000187003|chr9:108863406-108863406|G/-|frameshift_variant REV__ACTL7A|p.G363Afs*16|1|0.28|ENSG00000187003|chr9:108863406-108863406|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.3221130371094 2 421.242535 840.470518 0.076071 3.2044E-05 0.067058 2.8247E-05 0.14313 6.0292E-05 421.24237447849697 33.88 0.31886 31.664 31.527 31.846 -2.2158 11 8 2 0 0 0 0.98792 1 5941 5941 5.2307 0.47466 1 300290 + 25111 12926 16509 16515 24852 24852 0.043901133517124435 LAQTQLPA 8 Unmodified _LAQTQLPA_ 0 0 0 REV__ACTL7A|p.G363Afs*16|1|0.28|ENSG00000187003|chr9:108863406-108863406|G/-|frameshift_variant REV__ACTL7A|p.G363Afs*16|1|0.28|ENSG00000187003|chr9:108863406-108863406|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 421.242535 840.470518 0.098081 4.1316E-05 0.23698 9.9824E-05 0.33506 0.00014114 421.24248962719844 31.688 0.31476 31.688 31.495 31.809 0 0.013662 0.00017135 NaN 5.2307 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 754880 + 25112 12926 16509 16515 0.043901133517124435 LAQTQLPA 8 Unmodified _LAQTQLPA_ 0 0 0 REV__ACTL7A|p.G363Afs*16|1|0.28|ENSG00000187003|chr9:108863406-108863406|G/-|frameshift_variant REV__ACTL7A|p.G363Afs*16|1|0.28|ENSG00000187003|chr9:108863406-108863406|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 421.242535 840.470518 0.18324 7.7189E-05 -0.28148 -0.00011857 -0.098239 -4.1383E-05 421.2423825364084 33.817 0.34496 31.67 31.496 31.841 -2.1468 -0.0038402 -0.00026544 NaN 5.2307 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 607810 + 25113 12926 16509 16515 0.043901133517124435 LARAPCDQ 8 Unmodified _LARAPCDQ_ 0 0 0 ENST00000487805.6_1_3:49728598-49737610:+|nuORF ENST00000487805.6_1_3:49728598-49737610:+|nuORF ENST00000487805.6_1_3:49728598-49737610:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2148742675781 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 100.44 1 96.447 95.947 96.947 -3.9895 0 0 0 0.21486 1 19295 19295 9.3474 0 1 25114 10476 16510 16516 24853 24853 -0.023875877026057424 LARDPGLPL 9 Unmodified _LARDPGLPL_ 0 0 0 REV__ENST00000416600.6_1_20:3852035-3852320:+|nuORF REV__ENST00000416600.6_1_20:3852035-3852320:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 476.3426818847656 2 476.284734 950.554916 NaN NaN NaN NaN NaN NaN NaN 162.47 1 157.33 156.83 157.83 -5.1438 0 0 0 0.23411 1 31569 31569 13.508 0 1 + 25115 21468 16511 16517 24854 24854 0.07766064168481535 LAREAFRRA 9 Unmodified _LAREAFRRA_ 0 0 0 ENSG00000163933|ENST00000296292|RFT1 ENSG00000163933|ENST00000296292|RFT1 ENSG00000163933|ENST00000296292|RFT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.8634338378906 3 363.880713 1088.62031 0.22495 8.1857E-05 0.21539 7.8376E-05 0.44034 0.00016023 363.8807331390389 33.496 0.38272 31.349 31.149 31.532 -2.1468 16 10 2 0 0 0 0.58921 1 5820 5820 4.897 0 1 598640 25116 5484 16512 16518 24855 24855 0.07954478414194455 LARETVLTY 9 Unmodified _LARETVLTY_ 0 0 0 REV__ENSG00000272674|ENST00000609684|PCDHB16 REV__ENSG00000272674|ENST00000609684|PCDHB16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2837524414062 2 533.300581 1064.58661 0.52752 0.00028132 0.1132 6.0368E-05 0.64071 0.00034169 533.3005903416815 128.26 0.46487 123.44 123.23 123.7 -4.817 18 12 2 0 0 0 0.30618 1 24609 24609 31.268 2.1868 1 881470 + 25117 19921 16513 16519 24856 24856 0.05690012131753974 LARGLTLY 8 Unmodified _LARGLTLY_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7586669921875 2 453.774003 905.533452 -0.42897 -0.00019465 0.66973 0.00030391 0.24076 0.00010925 453.7742555679948 106 0.77005 101.74 101.34 102.11 -4.2638 56 21 3 0 0 0 8448 1 20796 20796 0.62683 0.49901 1 8829900 25118 6721 16514 16520 24857 24857 0.07690679139761869 LARHYKGI 8 Unmodified _LARHYKGI_ 0 0 0 REV__TTC9|p.P94Rfs*48|1|0.27|ENSG00000133985|chr14:70642406-70642407|CC/-|frameshift_variant REV__TTC9|p.P94Rfs*48|1|0.27|ENSG00000133985|chr14:70642406-70642407|CC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7312316894531 2 479.285069 956.555585 0.69742 0.00033426 -1.623 -0.00077786 -0.92553 -0.00044359 479.28427404940646 106.88 0.51697 102.74 102.46 102.98 -4.135 19 14 2 0 0 0 0.88646 1 20525 20525 1.4551 0 1 865750 + 25119 16187 16515 16521 24858 24858 0.07556903608190169 LARLLLLLGL 10 Unmodified _LARLLLLLGL_ 0 0 0 GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant;ENSG00000090581|ENST00000204679|GNPTG;ENST00000529957.5_1_16:1401966-1402161:+|nuORF GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant GNPTG|p.G261Rfs*38|1|0.23|ENSG00000090581|chr16:1362860-1362861|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7672119140625 2 547.886627 1093.7587 0.46884 0.00025687 2.3807 0.0013044 2.8496 0.0015612 547.8893636132495 119.51 0.10215 115.04 114.96 115.06 -4.467 4 2 2 0 0 0 0.91149 1 22996 22996 1.8442 0 1 527350 25120 1789 16516 16522 24859 24859 0.2155720860994279 LARPLKLGRK 10 Unmodified _LARPLKLGRK_ 0 0 0 ENST00000319888.10_1_18:2571338-2571422:-|nuORF ENST00000319888.10_1_18:2571338-2571422:-|nuORF ENST00000319888.10_1_18:2571338-2571422:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3212890625 2 576.3904 1150.76625 NaN NaN NaN NaN NaN NaN NaN 153 1 147.73 147.23 148.23 -5.2669 0 0 0 2.8426 1 29657 29657 0 0 1 25121 8705 16517 16523 24860 24860 0.1968936093019238 LARPPKAEI 9 Unmodified _LARPPKAEI_ 0 0 0 ENST00000370068.5_1_1:107683518-107690770:+|nuORF ENST00000370068.5_1_1:107683518-107690770:+|nuORF ENST00000370068.5_1_1:107683518-107690770:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.0050048828125 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 86.389 1 82.439 81.939 82.939 -3.9503 0 0 0 0.23508 1 16445 16445 4.897 0 1 25122 9134 16518 16524 24861 24861 0.10006039576853709 LARPPKAEI 9 Unmodified _LARPPKAEI_ 0 0 0 ENST00000370068.5_1_1:107683518-107690770:+|nuORF ENST00000370068.5_1_1:107683518-107690770:+|nuORF ENST00000370068.5_1_1:107683518-107690770:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.0047607421875 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 69.129 1 65.739 65.239 66.239 -3.3903 0 0 0 0.23508 1 13066 13066 4.897 2.1618 1 25123 9134 16518 16524 24862 24862 0.10006039576853709 LARPPKAEI 9 Unmodified _LARPPKAEI_ 0 0 0 ENST00000370068.5_1_1:107683518-107690770:+|nuORF ENST00000370068.5_1_1:107683518-107690770:+|nuORF ENST00000370068.5_1_1:107683518-107690770:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.19696044921875 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 106.26 1 102.16 101.66 102.66 -4.0913 0 0 0 0.23508 1 20432 20432 4.897 0 1 25124 9134 16518 16524 24863 24863 0.10006039576853709 LARRFLLRRKF 11 Unmodified _LARRFLLRRKF_ 0 0 0 nc|ENSG00000095303|P23219-3|PTGS1;nc|ENSG00000095303|P23219-2|PTGS1;ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1;nc|ENSG00000095303|P23219-4|PTGS1 nc|ENSG00000095303|P23219-3|PTGS1 nc|ENSG00000095303|P23219-3|PTGS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 492.9359130859375 3 492.652645 1474.93611 -1.8271 -0.00090012 -0.28664 -0.00014121 -2.1137 -0.0010413 492.65255064988276 12.483 0.14327 11.362 11.272 11.415 -1.1206 5 3 2 0 0 0 0.66313 1 1490 1490 0 0 1 587200 25125 1855 16519 16525 24864 24864 0.2176347693259686 LARRLARKP 9 Unmodified _LARRLARKP_ 0 0 0 REV__nc|ENSG00000114346|Q9H8V3-2|ECT2 REV__nc|ENSG00000114346|Q9H8V3-2|ECT2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 540.8050537109375 2 540.859267 1079.70398 NaN NaN NaN NaN NaN NaN NaN 163.68 1 158.89 158.39 159.39 -4.7898 0 0 0 0.19634 1 32649 32649 0.0033805 0 1 + 25126 15370 16520 16526 24865 24865 0.16731634581879007 LARRPKLQL 9 Unmodified _LARRPKLQL_ 0 0 0 CLPTM1L|p.T206Pfs*17|1|0.35|ENSG00000049656|chr5:1337966-1337966|T/-|frameshift_variant;nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L CLPTM1L|p.T206Pfs*17|1|0.35|ENSG00000049656|chr5:1337966-1337966|T/-|frameshift_variant CLPTM1L|p.T206Pfs*17|1|0.35|ENSG00000049656|chr5:1337966-1337966|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.778564453125 2 547.861475 1093.7084 NaN NaN NaN NaN NaN NaN NaN 60.227 1 60.227 59.727 60.727 0 0 0 0 0.19634 1 11545 11545 0.0033805 0 1 25127 584 16521 16527 24866 24866 0.16529099004787895 LARSENLIY 9 Unmodified _LARSENLIY_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013854980469 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 80.887 1 80.887 80.387 81.387 0 0 0 0 0.23508 1 15749 15749 2.4985 0 1 25128 3971 16522 16528 24867 24867 0.0461712798901317 LASDRWPA 8 Unmodified _LASDRWPA_ 0 0 0 REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.24029541015625 2 458.237784 914.461016 0.048904 2.241E-05 0.79436 0.000364 0.84326 0.00038641 458.2381246318011 56.968 0.63252 56.968 56.675 57.307 0 27 17 2 0 0 0 0.64227 1 10835 10835 19.439 4.8573 1 1882200 + 25129 23278 16523 16529 24868 24868 0.00036345066178000707 LASDRWPA 8 Unmodified _LASDRWPA_ 0 0 0 REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2381591796875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 82.572 1 82.572 82.072 83.072 0 0 0 0 0.20568 1 16090 16090 20.871 7.3633 1 + 25130 23278 16523 16529 24869 24869 0.00036345066178000707 LASDRWPA 8 Unmodified _LASDRWPA_ 0 0 0 REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2366027832031 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 103.42 1 103.42 102.92 103.92 0 0 0 0 0.21486 1 20321 20321 10.183 1.5901 1 + 25131 23278 16523 16529 24870 24870 0.00036345066178000707 LASDRWPA 8 Unmodified _LASDRWPA_ 0 0 0 REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23797607421875 2 458.237784 914.461016 -0.12358 -5.6631E-05 0.88877 0.00040727 0.76518 0.00035064 458.2381682955414 59.788 0.94103 56.855 56.469 57.41 -2.9333 35 26 2 0 0 0 0.64227 1 11483 11483 19.439 1.304 1 1770400 + 25132 23278 16523 16529 24871 24871 0.00036345066178000707 LASDRWPA 8 Unmodified _LASDRWPA_ 0 0 0 REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23907470703125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 52.983 1 50.1 49.6 50.6 -2.8837 0 0 0 0.21323 1 10090 10090 14.582 2.0501 1 + 25133 23278 16523 16529 24872 24872 0.00036345066178000707 LASDRWPA 8 Unmodified _LASDRWPA_ 0 0 0 REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2204284667969 2 458.237784 914.461016 0.13958 6.3962E-05 0.81717 0.00037446 0.95676 0.00043842 458.23800951520076 60.112 0.77853 56.888 56.533 57.312 -3.2237 45 21 3 0 0 0 0.64227 1 11233 11233 19.439 1.304 1 1506000 + 25134 23278 16523 16529 24873 24873 0.00036345066178000707 LASEAFVH 8 Unmodified _LASEAFVH_ 0 0 0 ENST00000371586.6_2_1:52818596-52818848:-|nuORF ENST00000371586.6_2_1:52818596-52818848:-|nuORF ENST00000371586.6_2_1:52818596-52818848:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2165832519531 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 111.12 1 111.12 110.62 111.62 0 0 0 0 0.21486 1 21857 21857 5.7604 0 1 25135 9163 16524 16530 24874 24874 -0.0021045968237558554 LASELHRSL 9 Unmodified _LASELHRSL_ 0 0 0 REV__ZFHX3|p.Q3546R|1|0.17|ENSG00000140836|chr16:72787639-72787639|T/C|missense_variant REV__ZFHX3|p.Q3546R|1|0.17|ENSG00000140836|chr16:72787639-72787639|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 513.2930908203125 2 513.290548 1024.56654 NaN NaN NaN NaN NaN NaN NaN 160.39 1 160.39 159.89 160.89 0 0 0 0 0.19632 1 32209 32209 0.073264 0 1 + 25136 25561 16525 16531 24875 24875 0.055242611917947215 LASENINL 8 Unmodified _LASENINL_ 0 0 0 nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant nc|ENSG00000144824|Q86SQ0-2|PHLDB2 nc|ENSG00000144824|Q86SQ0-2|PHLDB2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2280578613281 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 100.19 1 95.889 95.389 96.389 -4.297 0 0 0 0.21452 1 19158 19158 13.508 0 1 25137 4581 16526 16532 24876 24876 0.019015056264720442 LASFTFHP 8 Unmodified _LASFTFHP_ 0 0 0 REV__ENST00000473875.5_1_1:244724068-244773670:+|nuORF REV__ENST00000473875.5_1_1:244724068-244773670:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2388916015625 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 71.551 1 67.923 67.423 68.423 -3.6275 0 0 0 0.20568 1 13495 13495 20.871 5.024 1 + 25138 18654 16527 16533 24877 24877 -0.002538693027076988 LASGAGLGAVV 11 Unmodified _LASGAGLGAVV_ 0 0 0 ENSG00000167136|ENST00000372642|ENDOG ENSG00000167136|ENST00000372642|ENDOG ENSG00000167136|ENST00000372642|ENDOG MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2318420410156 2 457.768917 913.523281 NaN NaN NaN NaN NaN NaN NaN 54.751 1 51.614 51.114 52.114 -3.1377 0 0 0 0.10942 1 10142 10142 34.402 10.612 1 25139 5791 16528 16534 24878 24878 0.06306071414530834 LASGLVGAGVI 11 Unmodified _LASGLVGAGVI_ 0 0 0 REV__SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant REV__SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72918701171875 2 478.792392 955.570232 -0.064243 -3.0759E-05 0.23495 0.00011249 0.17071 8.1735E-05 478.79247868391053 131.49 0.84154 131.49 131.01 131.85 0 56 23 4 0 0 0 0.88709 1 26037 26037 13.042 5.7532 1 24756000 + 25140 14927 16529 16535 24879 24879 0.09066930965661868 LASIGGFVY 9 Unmodified _LASIGGFVY_ 0 0 0 REV__ENST00000502528.5_1_5:76728962-76747206:-|nuORF REV__ENST00000502528.5_1_5:76728962-76747206:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25787353515625 2 463.752736 925.490919 -0.13899 -6.4456E-05 0.30002 0.00013913 0.16103 7.4678E-05 463.7527521688039 90.09 1.3878 86.231 85.508 86.896 -3.8595 123 38 4 0 0 0 0.50294 1 17642 17642 19.439 1.304 1 28774000 + 25141 22441 16530 16536 24880 24880 0.025192840115323634 LASIGGFVY 9 Unmodified _LASIGGFVY_ 0 0 0 REV__ENST00000502528.5_1_5:76728962-76747206:-|nuORF REV__ENST00000502528.5_1_5:76728962-76747206:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2566833496094 2 463.752736 925.490919 0.32237 0.0001495 -0.17946 -8.3225E-05 0.14291 6.6277E-05 463.7525427644963 90.136 1.5501 86.091 85.381 86.931 -4.0443 122 43 4 0 0 0 0.41781 2 17200 17200;17243 24.674 3.8027 1 21419000 + 25142 22441 16530 16536 24881;24882 24881 0.025192840115323634 LASIGGFVY 9 Unmodified _LASIGGFVY_ 0 0 0 REV__ENST00000502528.5_1_5:76728962-76747206:-|nuORF REV__ENST00000502528.5_1_5:76728962-76747206:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.257080078125 2 463.752736 925.490919 0.17979 8.3378E-05 -0.12563 -5.8263E-05 0.054157 2.5116E-05 463.7525689878615 89.886 1.5406 86.108 85.313 86.854 -3.7779 138 43 4 0 0 0 0.41781 2 17221 17127;17221 24.674 3.8027 1 29379000 + 25143 22441 16530 16536 24883;24884 24884 0.025192840115323634 LASIGGFVY 9 Unmodified _LASIGGFVY_ 0 0 0 REV__ENST00000502528.5_1_5:76728962-76747206:-|nuORF REV__ENST00000502528.5_1_5:76728962-76747206:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 463.752736 925.490919 0.32237 0.0001495 -0.17946 -8.3225E-05 0.14291 6.6277E-05 463.7525427644963 90.136 1.5501 86.091 85.381 86.931 -4.0443 -0.031805 -0.00016162 NaN 24.674 122 43 4 NaN NaN NaN NaN 0 NaN NaN 0 21419000 + 25144 22441 16530 16536 0.025192840115323634 LASKKCSH 8 Unmodified _LASKKCSH_ 0 0 0 ADAMTS16|p.K1100E|1|0.26|ENSG00000145536|chr5:5306615-5306615|A/G|missense_variant;ENSG00000145536|ENST00000274181|ADAMTS16 ADAMTS16|p.K1100E|1|0.26|ENSG00000145536|chr5:5306615-5306615|A/G|missense_variant ADAMTS16|p.K1100E|1|0.26|ENSG00000145536|chr5:5306615-5306615|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2358093261719 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 68.666 1 68.666 68.166 69.166 0 0 0 0 0.21486 1 13280 13280 11.64 2.2929 1 25145 63 16531 16537 24885 24885 0.012492891941178641 LASNLPMMIP 10 Unmodified _LASNLPMMIP_ 0 0 0 ENST00000392653.2_1_1:153028821-153028899:-|nuORF ENST00000392653.2_1_1:153028821-153028899:-|nuORF ENST00000392653.2_1_1:153028821-153028899:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.786376953125 2 543.787938 1085.56132 NaN NaN NaN NaN NaN NaN NaN 151.03 1 145.85 145.35 146.35 -5.1759 0 0 0 2.8426 1 29275 29275 0.20733 0 1 25146 9380 16532 16538 24886 24886 0.021964980133361678 LASPQLQNLAP 11 Unmodified _LASPQLQNLAP_ 0 0 0 REV__ENST00000370220.1_1_10:102759899-102760451:+|nuORF REV__ENST00000370220.1_1_10:102759899-102760451:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3257446289062 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 170.31 1 165.52 165.02 166.02 -4.7898 0 0 0 0.22632 1 34554 34554 0.026206 0 1 + 25147 20975 16533 16539 24887 24887 0.06533086051808823 LASSKIMAAA 10 Unmodified _LASSKIMAAA_ 0 0 0 ENST00000523675.1_1_8:141900602-141931054:-|nuORF ENST00000523675.1_1_8:141900602-141931054:-|nuORF ENST00000523675.1_1_8:141900602-141931054:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7698669433594 2 481.770603 961.526652 NaN NaN NaN NaN NaN NaN NaN 150.03 1 144.83 144.33 145.33 -5.1994 0 0 0 0.22588 1 29066 29066 10.824 0.75 1 25148 10873 16534 16540 24888 24888 0.04434998196870765 LASSLVYNI 9 Unmodified _LASSLVYNI_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;HECTD4|p.L1880Pfs*22|1|0.19|ENSG00000173064|chr12:112231674-112231675|-/TAGGA|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2767333984375 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 104.48 1 104.48 103.98 104.98 0 0 0 0 0.23508 1 20531 20531 12.532 0 1 25149 6261 16535 16541 24889 24889 0.04846938211710494 LASSVISLGL 10 Unmodified _LASSVISLGL_ 0 0 0 REV__ZBTB5|p.T398Wfs*7|1|0.07|ENSG00000168795|chr9:37441360-37441361|-/TGAGTCCA|frameshift_variant REV__ZBTB5|p.T398Wfs*7|1|0.07|ENSG00000168795|chr9:37441360-37441361|-/TGAGTCCA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23602294921875 2 480.292225 958.569897 0.062966 3.0242E-05 0.082254 3.9506E-05 0.14522 6.9748E-05 480.2922808858366 133.6 0.72739 128.73 128.37 129.09 -4.8726 46 20 3 0 0 0 0.20847 2 25696 25669;25696 43.858 5.6827 1 3746000 + 25150 18056 16536 16542 24890;24891 24891 0.08895511245816579 LASTYLARLG 10 Unmodified _LASTYLARLG_ 0 0 0 USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant;ENSG00000162402|ENST00000294383|USP24;USP24|p.I478Ffs*12|1|0.09|ENSG00000162402|chr1:55156962-55156962|T/-|frameshift_variant;USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant;USP24|p.F796Lfs*4|1|0.37|ENSG00000162402|chr1:55144178-55144178|A/-|frameshift_variant USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 355.16290283203125 3 355.541475 1063.60259 -0.32481 -0.00011548 0.27617 9.819E-05 -0.048642 -1.7294E-05 355.5415208786417 47.251 0.58995 44.382 44.081 44.671 -2.869 43 16 3 0 0 0 1.1258 1 8862 8862 0.26539 0.23398 1 6471100 25151 5329 16537 16543 24892 24892 0.07333718368658992 LASVAAKD 8 Unmodified _LASVAAKD_ 0 0 0 REV__ENST00000463516.5_1_7:45003626-45005995:-|nuORF REV__ENST00000463516.5_1_7:45003626-45005995:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7214660644531 2 387.721436 773.428318 0.32393 0.00012559 -0.093772 -3.6358E-05 0.23015 8.9236E-05 387.7213164566901 71.352 0.56721 67.772 67.47 68.037 -3.5798 31 15 3 0 0 0 8448 1 13499 13499 0.68139 0 1 1802400 + 25152 21920 16538 16544 24893 24893 0.03254137943326896 LASVEKSII 9 Unmodified _LASVEKSII_ 0 0 0 ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2414855957031 2 480.292225 958.569897 0.062966 3.0242E-05 0.082254 3.9506E-05 0.14522 6.9748E-05 480.2922808858366 133.6 0.72739 128.73 128.37 129.09 -4.8726 46 20 3 0 0 0 0.46541 1 25611 25611 21.747 0 1 3746000 25153 6493 16539 16545 24894 24894 0.08895511245816579 LASVEVPD 8 Unmodified _LASVEVPD_ 0 0 0 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.20989990234375 2 415.218726 828.422899 NaN NaN NaN NaN NaN NaN NaN 79.949 1 76.439 75.939 76.939 -3.5102 0 0 0 0.2074 1 15613 15613 19.439 3.6708 1 25154 4005 16540 16546 24895 24895 0.001824143608587292 LASVQSGL 8 Unmodified _LASVQSGL_ 0 0 0 REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7216491699219 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 42.563 1 39.912 39.412 40.412 -2.651 0 0 0 0.23025 1 7665 7665 0.25148 0 1 + 25155 13214 16541 16547 24896 24896 0.03254137943349633 LASVQSGL 8 Unmodified _LASVQSGL_ 0 0 0 REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7216491699219 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 42.58 1 39.929 39.429 40.429 -2.651 0 0 0 0.21486 1 7668 7668 2.5775 0 1 + 25156 13214 16541 16547 24897 24897 0.03254137943349633 LASVQSGL 8 Unmodified _LASVQSGL_ 0 0 0 REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7215576171875 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 42.628 1 40.022 39.522 40.522 -2.606 0 0 0 0.23487 1 7672 7672 0.68139 0 1 + 25157 13214 16541 16547 24898 24898 0.03254137943349633 LATASEAAAV 10 Unmodified _LATASEAAAV_ 0 0 0 REV__ENST00000419807.5_3_2:44396152-44396269:+|nuORF REV__ENST00000419807.5_3_2:44396152-44396269:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.74725341796875 2 452.242732 902.470912 -0.33192 -0.00015011 0.42039 0.00019012 0.088467 4.0009E-05 452.24289080192176 53.646 0.76475 50.762 50.385 51.15 -2.8837 63 21 4 0 0 0 0.664 1 10257 10257 14.838 0.93222 1 41646000 + 25158 21497 16542 16548 24899 24899 0.015774882809068913 LATATRPEG 9 Unmodified _LATATRPEG_ 0 0 0 REV__DLX5|p.G53Efs*28|1|0.46|ENSG00000105880|chr7:97024466-97024466|C/-|frameshift_variant REV__DLX5|p.G53Efs*28|1|0.46|ENSG00000105880|chr7:97024466-97024466|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23858642578125 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 52.742 1 49.859 49.359 50.359 -2.8837 0 0 0 0.22251 1 10042 10042 16.942 3.4344 1 + 25159 13696 16543 16549 24900 24900 0.02148310375048368 LATATRPEG 9 Unmodified _LATATRPEG_ 0 0 0 REV__DLX5|p.G53Efs*28|1|0.46|ENSG00000105880|chr7:97024466-97024466|C/-|frameshift_variant REV__DLX5|p.G53Efs*28|1|0.46|ENSG00000105880|chr7:97024466-97024466|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2291564941406 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 52.775 1 49.891 49.391 50.391 -2.8837 0 0 0 0.19711 1 10049 10049 0.12781 0.0049496 1 + 25160 13696 16543 16549 24901 24901 0.02148310375048368 LATDISRQNEY 11 Unmodified _LATDISRQNEY_ 0 0 0 nc|ENSG00000205268|Q13946-3|PDE7A;nc|ENSG00000205268|Q13946-2|PDE7A;ENSG00000205268|ENST00000401827|PDE7A nc|ENSG00000205268|Q13946-3|PDE7A nc|ENSG00000205268|Q13946-3|PDE7A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2163391113281 3 437.217608 1308.63099 NaN NaN NaN NaN NaN NaN NaN 116.39 1 112.04 111.54 112.54 -4.3585 0 0 0 0.23103 1 22408 22408 7.4771 3.3604 1 25161 7636 16544 16550 24902 24902 -0.010976285127071606 LATDMGTMQ 9 Unmodified _LATDMGTMQ_ 0 0 0 ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1242980957031 3 323.145627 966.415053 NaN NaN NaN NaN NaN NaN NaN 100.73 1 96.436 95.936 96.936 -4.297 0 0 0 0.23508 1 19271 19271 0.26902 0 1 25162 2599 16545 16551 24903 24903 -0.06949804222551847 LATDMGTMQ 9 Unmodified _LATDMGTMQ_ 0 0 0 ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.159912109375 3 323.145627 966.415053 NaN NaN NaN NaN NaN NaN NaN 103.48 1 99.135 98.635 99.635 -4.346 0 0 0 0.23508 1 19820 19820 0.26902 0 1 25163 2599 16545 16551 24904 24904 -0.06949804222551847 LATDSYKKYD 10 Unmodified _LATDSYKKYD_ 0 0 0 ENST00000491027.5_1_7:105903822-105925330:-|nuORF ENST00000491027.5_1_7:105903822-105925330:-|nuORF ENST00000491027.5_1_7:105903822-105925330:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2975463867188 2 602.298236 1202.58192 NaN NaN NaN NaN NaN NaN NaN 44.795 1 42.047 41.547 42.547 -2.7475 0 0 0 0.22569 1 8113 8113 15.847 2.8047 1 25164 10523 16546 16552 24905 24905 -0.011269168016497133 LATEAGAQL 9 Unmodified _LATEAGAQL_ 0 0 0 REV__ENST00000300456.4_1_9:131103041-131107595:+|nuORF REV__ENST00000300456.4_1_9:131103041-131107595:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2281494140625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 67.023 1 67.023 66.523 67.523 0 0 0 0 0.13725 1 12950 12950 2.6312 0 1 + 25165 20401 16547 16553 24906 24906 0.019015056264720442 LATEDEIQ 8 Unmodified _LATEDEIQ_ 0 0 0 ENST00000446174.1_1:144277348-144311520:-|nuORF ENST00000446174.1_1:144277348-144311520:-|nuORF ENST00000446174.1_1:144277348-144311520:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.22650146484375 2 459.724372 917.434192 0.51668 0.00023753 1.073 0.00049327 1.5897 0.0007308 459.7248691124994 44.62 0.94499 44.62 44.254 45.199 0 52 26 3 0 0 0 0.69031 1 8377 8377 15.847 0 1 5066000 25166 9941 16548 16554 24907 24907 -0.027828083356666866 LATEKPEGEL 10 Unmodified _LATEKPEGEL_ 0 0 0 REV__ENST00000300134.7_1_12:57490210-57490348:-|nuORF REV__ENST00000300134.7_1_12:57490210-57490348:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7877807617188 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 117.35 1 112.74 112.24 113.24 -4.6106 0 0 0 2.8426 1 22519 22519 0.51642 0.30909 1 + 25167 20396 16549 16555 24908 24908 0.021096981696246075 LATGWERK 8 Unmodified _LATGWERK_ 0 0 0 ENST00000518298.5_1_8:134488756-134558022:-|nuORF ENST00000518298.5_1_8:134488756-134558022:-|nuORF ENST00000518298.5_1_8:134488756-134558022:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.1795654296875 3 320.846898 959.518865 -0.43258 -0.00013879 0.12585 4.0379E-05 -0.30673 -9.8413E-05 320.84699363713713 51.007 0.74113 48.125 47.822 48.563 -2.8824 34 20 2 0 0 0 0.83982 1 9675 9675 1.6526 0 1 1260100 25168 10805 16550 16556 24909 24909 0.03748606991609904 LATGWERK 8 Unmodified _LATGWERK_ 0 0 0 ENST00000518298.5_1_8:134488756-134558022:-|nuORF ENST00000518298.5_1_8:134488756-134558022:-|nuORF ENST00000518298.5_1_8:134488756-134558022:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 320.846898 959.518865 -0.74754 -0.00023985 0.47048 0.00015095 -0.27706 -8.8893E-05 320.84706268834685 51.181 0.83861 48.129 47.82 48.658 -3.0517 0.0023156 0.00012755 NaN 1.6526 38 23 2 NaN NaN NaN NaN 0 NaN NaN 0 757050 25169 10805 16550 16556 0.03748606991609904 LATHGLGP 8 Unmodified _LATHGLGP_ 0 0 0 REV__ENST00000463516.5_1_7:45003626-45005995:-|nuORF REV__ENST00000463516.5_1_7:45003626-45005995:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 383.48828125 2 383.216321 764.418088 NaN NaN NaN NaN NaN NaN NaN 51.992 1 49.11 48.61 49.61 -2.8824 0 0 0 0.23366 1 9887 9887 0.62683 0 1 + 25170 21920 16551 16557 24910 24910 0.026455750087507113 LATHRRLI 8 Unmodified _LATHRRLI_ 0 0 0 REV__ENST00000326764.9_2_19:54972239-54972944:+|nuORF REV__ENST00000326764.9_2_19:54972239-54972944:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2579040527344 2 490.311618 978.608683 0.10452 5.1246E-05 -2.7717 -0.001359 -2.6672 -0.0013077 490.3102034683862 130.55 0.10446 125.92 125.83 125.93 -4.6359 4 2 2 0 0 0 1.0035 1 25726 25726 0.79363 0 1 526650 + 25171 20585 16552 16558 24911 24911 0.11852281390849839 LATKGFRN 8 Unmodified _LATKGFRN_ 0 0 0 REV__ENSG00000129355|ENST00000393599|CDKN2D REV__ENSG00000129355|ENST00000393599|CDKN2D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75982666015625 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 91.48 1 91.48 90.98 91.98 0 0 0 0 0.2343 1 17878 17878 0.62683 0 1 + 25172 15960 16553 16559 24912 24912 0.051766243371730525 LATLAATT 8 Unmodified _LATLAATT_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant;MUC16|p.S4774Ffs*12|1|0.01|ENSG00000181143|chr19:8962451-8962452|-/AC|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21343994140625 2 381.223811 760.433069 NaN NaN NaN NaN NaN NaN NaN 51.307 1 48.424 47.924 48.924 -2.8824 0 0 0 0.2396 1 9747 9747 0 0 1 25173 6711 16554 16560 24913 24913 0.04327022086079069 LATLRRWK 8 Unmodified _LATLRRWK_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2072Kfs*10|1|0.35|ENSG00000144426|chr2:203172825-203172826|-/A|frameshift_variant;NBEAL1|p.F2315Lfs*2|1|0.17|ENSG00000144426|chr2:203193900-203193900|T/-|frameshift_variant;NBEAL1|p.K2562Rfs*15|1|0.41|ENSG00000144426|chr2:203209306-203209306|A/-|frameshift_variant nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.263916015625 2 522.327268 1042.63998 -0.16004 -8.3595E-05 3.0559 0.0015962 2.8959 0.0015126 522.3306396676171 142.85 0.20493 138.19 138.03 138.24 -4.656 7 5 2 0 0 0 0.76728 1 28213 28213 5.7604 0.52976 1 4163400 25174 4552 16555 16561 24914 24914 0.12036854424923149 LATNGKAS 8 Unmodified _LATNGKAS_ 0 0 0 REV__ENST00000431297.1_1_21:15134673-15136650:+|nuORF REV__ENST00000431297.1_1_21:15134673-15136650:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.20965576171875 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 139.68 1 139.68 139.18 140.18 0 0 0 0 0.23711 1 27776 27776 0.0082765 0 1 + 25175 21617 16556 16562 24915 24915 0.018129672835243582 LATNGKAS 8 Unmodified _LATNGKAS_ 0 0 0 REV__ENST00000431297.1_1_21:15134673-15136650:+|nuORF REV__ENST00000431297.1_1_21:15134673-15136650:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2095642089844 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 78.884 1 75.208 74.708 75.708 -3.676 0 0 0 0.2396 1 15026 15026 0 0 1 + 25176 21617 16556 16562 24916 24916 0.018129672835243582 LATNGKAS 8 Unmodified _LATNGKAS_ 0 0 0 REV__ENST00000431297.1_1_21:15134673-15136650:+|nuORF REV__ENST00000431297.1_1_21:15134673-15136650:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2101135253906 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 143.56 1 138.66 138.16 139.16 -4.8982 0 0 0 0.2396 1 27709 27709 0 0 1 + 25177 21617 16556 16562 24917 24917 0.018129672835243582 LATNQPFF 8 Unmodified _LATNQPFF_ 0 0 0 ENSG00000105671|ENST00000247003|DDX49;ENST00000601803.5_1_19:19032987-19035509:+|nuORF;nc|ENSG00000105671|Q9Y6V7-2|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF;DDX49|p.M267Ifs*15|1|0.15|ENSG00000105671|chr19:18924257-18924257|G/-|frameshift_variant;ENST00000599156.5_1_19:19033185-19035061:+|nuORF ENSG00000105671|ENST00000247003|DDX49;ENST00000599156.5_1_19:19033185-19035061:+|nuORF ENSG00000105671|ENST00000247003|DDX49 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.2117919921875 3 313.164116 936.470518 NaN NaN NaN NaN NaN NaN NaN 61.27 1 61.27 60.77 61.77 0 0 0 0 0.21486 1 11757 11757 4.3292 0.38484 1 25178 2332;11690 16557 16563 24918 24918 -0.00025886648290907033 LATNQPFF 8 Unmodified _LATNQPFF_ 0 0 0 ENSG00000105671|ENST00000247003|DDX49;ENST00000601803.5_1_19:19032987-19035509:+|nuORF;nc|ENSG00000105671|Q9Y6V7-2|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF;DDX49|p.M267Ifs*15|1|0.15|ENSG00000105671|chr19:18924257-18924257|G/-|frameshift_variant;ENST00000599156.5_1_19:19033185-19035061:+|nuORF ENSG00000105671|ENST00000247003|DDX49;ENST00000599156.5_1_19:19033185-19035061:+|nuORF ENSG00000105671|ENST00000247003|DDX49 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.16339111328125 3 313.164116 936.470518 NaN NaN NaN NaN NaN NaN NaN 66.541 1 63.214 62.714 63.714 -3.3268 0 0 0 0.21486 1 12529 12529 1.8442 0 1 25179 2332;11690 16557 16563 24919 24919 -0.00025886648290907033 LATRRYQAS 9 Unmodified _LATRRYQAS_ 0 0 0 nc|ENSG00000108375|Q68DV7-4|RNF43;RNF43|p.G659Vfs*41|19|0.36|ENSG00000108375|chr17:58357800-58357800|C/-|frameshift_variant;RNF43|p.A629Pfs*71|1|0.56|ENSG00000108375|chr17:58357891-58357891|C/-|frameshift_variant;nc|ENSG00000108375|Q68DV7-2|RNF43;ENSG00000108375|ENST00000407977|RNF43;chr17:58415759-58417017|443|15.45|0.8|4.27|-|ENST00000577716|RNF43,RNF43;RNF43|p.H295Ifs*124|1|0.71|ENSG00000108375|chr17:58360218-58360218|G/-|frameshift_variant;RNF43|p.P441Hfs*2|1|0.35|ENSG00000108375|chr17:58358454-58358455|-/T|frameshift_variant;nc|ENSG00000108375|Q68DV7-3|RNF43 nc|ENSG00000108375|Q68DV7-4|RNF43 nc|ENSG00000108375|Q68DV7-4|RNF43 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2794799804688 2 533.293622 1064.57269 NaN NaN NaN NaN NaN NaN NaN 161.07 1 155.82 155.32 156.32 -5.2526 0 0 0 0.23508 1 31256 31256 13.042 0.51092 1 25180 12279 16558 16564 24920 24920 0.042987794233113164 LATSSLVG 8 Unmodified _LATSSLVG_ 0 0 0 ENSG00000185519|ENST00000375662|FAM131C ENSG00000185519|ENST00000375662|FAM131C ENSG00000185519|ENST00000375662|FAM131C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 374.53961181640625 2 374.215986 746.417419 NaN NaN NaN NaN NaN NaN NaN 95.256 1 91.375 90.875 91.875 -3.881 0 0 0 0.21486 1 18278 18278 2.5775 0 1 25181 6998 16559 16565 24921 24921 0.03406735569058128 LATTDKIL 8 Unmodified _LATTDKIL_ 0 0 0 REV__ENSG00000138095|ENST00000260665|LRPPRC REV__ENSG00000138095|ENST00000260665|LRPPRC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21527099609375 2 437.765843 873.517133 -0.054175 -2.3716E-05 0.13587 5.9478E-05 0.081693 3.5762E-05 437.76583732644855 127.5 0.77195 122.88 122.47 123.24 -4.6172 45 21 3 0 0 0 1.0244 1 25201 25201 2.8892 0 1 5291900 + 25182 16437 16560 16566 24922 24922 0.0753155318300287 LATTRLVP 8 Unmodified _LATTRLVP_ 0 0 0 ENST00000482818.1_1_22:29724072-29724282:-|nuORF ENST00000482818.1_1_22:29724072-29724282:-|nuORF ENST00000482818.1_1_22:29724072-29724282:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22259521484375 2 435.774003 869.533452 -0.13493 -5.88E-05 0.2979 0.00012982 0.16296 7.1016E-05 435.77407531536073 22.709 0.35719 21.256 21.083 21.44 -1.4535 22 9 4 0 0 0 0.83271 1 3626 3626 2.8892 0 1 1576000 25183 10402 16561 16567 24923 24923 0.09346679139764547 LATVKTDEL 9 Unmodified _LATVKTDEL_ 0 0 0 REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 495.28094482421875 2 495.279315 988.544076 NaN NaN NaN NaN NaN NaN NaN 149.78 1 145.05 144.55 145.55 -4.7323 0 0 0 0.23508 1 29743 29743 8.5933 0 1 + 25184 18690 16562 16568 24924 24924 0.04934617003505082 LATVTKLSF 9 Unmodified _LATVTKLSF_ 0 0 0 SLC35E1|p.E183K|1|0.26|ENSG00000127526|chr19:16568115-16568115|C/T|missense_variant SLC35E1|p.E183K|1|0.26|ENSG00000127526|chr19:16568115-16568115|C/T|missense_variant SLC35E1|p.E183K|1|0.26|ENSG00000127526|chr19:16568115-16568115|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2578430175781 2 490.294768 978.574983 NaN NaN NaN NaN NaN NaN NaN 31.698 1 29.55 29.05 30.05 -2.1483 0 0 0 0.23508 1 5469 5469 11.64 3.7301 1 25185 25680 16563 16569 24925 24925 0.08483815108422732 LATVYYSL 8 Unmodified _LATVYYSL_ 0 0 0 SH3TC2|p.R1171C|1|0.48|ENSG00000169247|chr5:149007045-149007045|G/A|missense_variant;ENST00000510350.1_1_5:148334415-148386623:-|nuORF;nc|ENSG00000169247|Q8TF17-3|SH3TC2;nc|ENSG00000169247|Q8TF17-2|SH3TC2;ENST00000510779.1_1_5:148384276-148408226:-|nuORF;nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2 SH3TC2|p.R1171C|1|0.48|ENSG00000169247|chr5:149007045-149007045|G/A|missense_variant SH3TC2|p.R1171C|1|0.48|ENSG00000169247|chr5:149007045-149007045|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25079345703125 2 465.252569 928.490584 NaN NaN NaN NaN NaN NaN NaN 157.78 1 152.51 152.01 153.01 -5.2712 0 0 0 0.21452 1 30606 30606 13.508 2.3934 1 25186 5974 16564 16570 24926 24926 0.02347864291652968 LATWALSHST 10 Unmodified _LATWALSHST_ 0 0 0 REV__HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant REV__HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.780029296875 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 122.99 1 118.42 117.92 118.92 -4.5757 0 0 0 2.8426 1 24247 24247 0.043787 0 1 + 25187 14895 16565 16571 24927 24927 0.01120554954900399 LAVARLGLEK 10 Unmodified _LAVARLGLEK_ 0 0 0 REV__nc|ENSG00000174233|O43306-2|ADCY6 REV__nc|ENSG00000174233|O43306-2|ADCY6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.563720703125 3 357.229119 1068.66553 -0.3662 -0.00013082 0.21234 7.5855E-05 -0.15386 -5.4963E-05 357.2291410594959 74.842 0.58881 71.248 70.884 71.473 -3.594 27 16 2 0 0 0 0.69026 1 14238 14238 12.175 2.6308 1 1133000 + 25188 18403 16566 16572 24928 24928 0.13394284156697722 LAVDVSAS 8 Unmodified _LAVDVSAS_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2044372558594 2 381.205618 760.396684 NaN NaN NaN NaN NaN NaN NaN 56.812 1 53.917 53.417 54.417 -2.8944 0 0 0 0.21486 1 10894 10894 9.3474 0 1 25189 2950 16567 16573 24929 24929 0.006901451893895683 LAVECVAEK 9 Unmodified _LAVECVAEK_ 0 0 0 REV__ENSG00000115306|ENST00000356805|SPTBN1 REV__ENSG00000115306|ENST00000356805|SPTBN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2550354003906 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 150.26 1 150.26 149.76 150.76 0 0 0 0 0.22251 1 30083 30083 16.942 2.3606 1 + 25190 15420 16568 16574 24930 24930 0.013190054429287557 LAVFRFKV 8 Unmodified _LAVFRFKV_ 0 0 0 STARD3NL|p.I112M|1|0.43|ENSG00000010270|chr7:38215060-38215060|A/G|missense_variant;ENST00000471550.1_1_7:38247105-38254853:+|nuORF;nc|ENSG00000010270|O95772-2|STARD3NL;ENSG00000010270|ENST00000009041|STARD3NL STARD3NL|p.I112M|1|0.43|ENSG00000010270|chr7:38215060-38215060|A/G|missense_variant STARD3NL|p.I112M|1|0.43|ENSG00000010270|chr7:38215060-38215060|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2667541503906 2 490.308013 978.601472 NaN NaN NaN NaN NaN NaN NaN 137.56 1 132.72 132.22 133.22 -4.84 0 0 0 0.22834 1 26504 26504 0.68139 0 1 25191 1060 16569 16575 24931 24931 0.1113154879042213 LAVGCWPAG 9 Unmodified _LAVGCWPAG_ 0 0 0 REV__ENST00000426250.3_1_12:72665645-72666709:-|nuORF REV__ENST00000426250.3_1_12:72665645-72666709:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2154846191406 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 107.63 1 103.31 102.81 103.81 -4.32 0 0 0 0.23048 1 21201 21201 14.582 3.4672 1 + 25192 21565 16570 16576 24932 24932 -0.019854982088986617 LAVHNAVKQ 9 Unmodified _LAVHNAVKQ_ 0 0 0 REV__nc|ENSG00000182150|Q5T890-2|ERCC6L2 REV__nc|ENSG00000182150|Q5T890-2|ERCC6L2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2625427246094 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 82.537 1 78.839 78.339 79.339 -3.6985 0 0 0 0.19657 1 15740 15740 4.897 0 1 + 25193 18759 16571 16577 24933 24933 0.07092582399991443 LAVHSHSR 8 Unmodified _LAVHSHSR_ 0 0 0 ENST00000606197.1_1_6:22147303-22147456:+|nuORF ENST00000606197.1_1_6:22147303-22147456:+|nuORF ENST00000606197.1_1_6:22147303-22147456:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7501525878906 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 126.92 1 122.3 121.8 122.8 -4.6172 0 0 0 0.21486 1 25026 25026 8.5933 0.68312 1 25194 11743 16572 16578 24934 24934 0.02662569534618342 LAVILPRISY 10 Unmodified _LAVILPRISY_ 0 0 0 REV__ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant REV__ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 382.2421875 3 382.241137 1143.70158 NaN NaN NaN NaN NaN NaN NaN 52.201 1 52.201 51.701 52.701 0 0 0 0 0.22588 1 9920 9920 2.086 0 1 + 25195 14623 16573 16579 24935 24935 0.13547741333559316 LAVKHQVY 8 Unmodified _LAVKHQVY_ 0 0 0 ENST00000503780.5_2_4:175204968-175219170:+|nuORF ENST00000503780.5_2_4:175204968-175219170:+|nuORF ENST00000503780.5_2_4:175204968-175219170:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7276916503906 2 479.279452 956.544351 -0.052518 -2.5171E-05 -0.098883 -4.7393E-05 -0.1514 -7.2564E-05 479.27935151967483 79.493 0.62527 75.688 75.128 75.753 -3.8048 27 17 2 0 0 0 0.96284 1 14988 14988 13.508 4.1604 1 1142200 25196 10647 16574 16580 24936 24936 0.0643408151404401 LAVLILCTM 9 Unmodified _LAVLILCTM_ 0 0 0 REV__ENST00000552459.2_1_12:51634062-51634266:+|nuORF REV__ENST00000552459.2_1_12:51634062-51634266:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2625732421875 2 488.782124 975.549696 -0.24553 -0.00012001 0.64139 0.0003135 0.39586 0.00019349 488.7825090238437 42.154 4.8415 39.548 38.415 43.257 -2.606 287 137 4 0 0 0 0.67531 1 7548 7548 7.9102 1.187 1 11652000 + 25197 22947 16575 16581 24937 24937 0.06094300990002921 LAVLLRVPG 9 Unmodified _LAVLLRVPG_ 0 0 0 ENST00000430580.6_1_1:16935166-16935205:-|nuORF ENST00000430580.6_1_1:16935166-16935205:-|nuORF ENST00000430580.6_1_1:16935166-16935205:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.1883850097656 3 313.211289 936.612037 NaN NaN NaN NaN NaN NaN NaN 57.41 1 57.41 56.91 57.91 0 0 0 0 0.23508 1 10975 10975 1.1933 0.92432 1 25198 9779 16576 16582 24938 24938 0.14119531444850963 LAVLLVLVLL 10 Unmodified _LAVLLVLVLL_ 0 0 0 REV__ENSG00000129910|ENST00000289746|CDH15 REV__ENSG00000129910|ENST00000289746|CDH15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2766723632812 2 533.385929 1064.7573 0.10751 5.7347E-05 -2.9537 -0.0015755 -2.8462 -0.0015181 533.8866512073504 135.94 0.20581 135.94 135.78 135.99 0 7 5 2 0 0 0 0.91149 1 26898 26898 0.45834 0 1 2449400 + 25199 15974 16577 16583 24939 24939 0.22751574521180373 LAVPRGVLL 9 Unmodified _LAVPRGVLL_ 0 0 0 SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant;nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-3|AFG2B SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.2373046875 3 313.211289 936.612037 NaN NaN NaN NaN NaN NaN NaN 59.01 1 59.01 58.51 59.51 0 0 0 0 0.23508 1 11303 11303 0.26902 0 1 25200 6166 16578 16584 24940 24940 0.14119531444862332 LAVPRGVLL 9 Unmodified _LAVPRGVLL_ 0 0 0 SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant;nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-3|AFG2B SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.20404052734375 3 313.211289 936.612037 NaN NaN NaN NaN NaN NaN NaN 59.368 1 59.368 58.868 59.868 0 0 0 0 0.23508 1 11373 11373 0.26902 0 1 25201 6166 16578 16584 24941 24941 0.14119531444862332 LAVPRGVLL 9 Unmodified _LAVPRGVLL_ 0 0 0 SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant;nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-3|AFG2B SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.1239318847656 3 313.211289 936.612037 NaN NaN NaN NaN NaN NaN NaN 64.099 1 64.099 63.599 64.599 0 0 0 0 0.23508 1 12337 12337 0.26902 0 1 25202 6166 16578 16584 24942 24942 0.14119531444862332 LAVPRGVLL 9 Unmodified _LAVPRGVLL_ 0 0 0 SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant;nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-3|AFG2B SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.1434326171875 3 313.211289 936.612037 NaN NaN NaN NaN NaN NaN NaN 64.118 1 64.118 63.618 64.618 0 0 0 0 0.23508 1 12342 12342 0.26902 0 1 25203 6166 16578 16584 24943 24943 0.14119531444862332 LAVQRKVR 8 Unmodified _LAVQRKVR_ 0 0 0 REV__PALM3|p.D604Mfs*118|1|0.23|ENSG00000187867|chr19:14053817-14053817|C/-|frameshift_variant REV__PALM3|p.D604Mfs*118|1|0.23|ENSG00000187867|chr19:14053817-14053817|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1792907714844 3 323.882054 968.624333 NaN NaN NaN NaN NaN NaN NaN 30.635 1 28.743 28.243 29.243 -1.8928 0 0 0 0.2386 1 5261 5261 0.12286 0 1 + 25204 24429 16579 16585 24944 24944 0.13876567907902881 LAVRGRLR 8 Unmodified _LAVRGRLR_ 0 0 0 REV__MED16|p.V318*|1|0.26|ENSG00000175221|chr19:884936-884936|C/-|frameshift_variant REV__MED16|p.V318*|1|0.26|ENSG00000175221|chr19:884936-884936|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.15972900390625 3 314.210282 939.609017 -0.20844 -6.5494E-05 0.050558 1.5886E-05 -0.15788 -4.9608E-05 314.2102473287765 33.006 0.62633 30.776 30.47 31.096 -2.2305 39 17 3 0 0 0 0.89848 1 5967 5967 0.0082765 0 1 3655700 + 25205 18463 16580 16586 24945 24945 0.13679701110709175 LAVRGRLR 8 Unmodified _LAVRGRLR_ 0 0 0 REV__MED16|p.V318*|1|0.26|ENSG00000175221|chr19:884936-884936|C/-|frameshift_variant REV__MED16|p.V318*|1|0.26|ENSG00000175221|chr19:884936-884936|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 314.210282 939.609017 0.24763 7.7807E-05 -0.34174 -0.00010738 -0.094114 -2.9572E-05 314.21013222248064 32.823 0.62592 30.676 30.38 31.006 -2.1468 -0.086817 -0.00038259 NaN 0.0082765 43 17 4 NaN NaN NaN NaN 0 NaN NaN 0 3820100 + 25206 18463 16580 16586 0.13679701110709175 LAVRGRLR 8 Unmodified _LAVRGRLR_ 0 0 0 REV__MED16|p.V318*|1|0.26|ENSG00000175221|chr19:884936-884936|C/-|frameshift_variant REV__MED16|p.V318*|1|0.26|ENSG00000175221|chr19:884936-884936|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 314.210282 939.609017 -0.25669 -8.0655E-05 0.27867 8.7562E-05 0.021982 6.907E-06 314.21030795495165 32.954 0.59059 30.738 30.42 31.01 -2.2158 -0.025089 0.00020223 NaN 0.0082765 42 16 4 NaN NaN NaN NaN 0 NaN NaN 0 3003500 + 25207 18463 16580 16586 0.13679701110709175 LAVSATAAA 9 Unmodified _LAVSATAAA_ 0 0 0 BRINP2|p.Q261Sfs*6|1|0.21|ENSG00000198797|chr1:177276200-177276201|-/T|frameshift_variant;BRINP2|p.A221Pfs*53|1|0.37|ENSG00000198797|chr1:177257372-177257372|G/-|frameshift_variant;ENSG00000198797|ENST00000361539|BRINP2 BRINP2|p.Q261Sfs*6|1|0.21|ENSG00000198797|chr1:177276200-177276201|-/T|frameshift_variant BRINP2|p.Q261Sfs*6|1|0.21|ENSG00000198797|chr1:177276200-177276201|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7214050292969 2 387.721436 773.428318 -0.28554 -0.00011071 0.39557 0.00015337 0.11003 4.2662E-05 387.7215406669897 71.24 0.70171 67.773 67.486 68.187 -3.467 33 19 2 0 0 0 0.069289 1 13553 13553 4.477 0 1 1703700 25208 334 16581 16587 24946 24946 0.03254137943315527 LAVSSQVA 8 Unmodified _LAVSSQVA_ 0 0 0 ENST00000435805.6_1_10:43047647-43047983:-|nuORF ENST00000435805.6_1_10:43047647-43047983:-|nuORF ENST00000435805.6_1_10:43047647-43047983:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7214660644531 2 387.721436 773.428318 0.32393 0.00012559 -0.093772 -3.6358E-05 0.23015 8.9236E-05 387.7213164566901 71.352 0.56721 67.772 67.47 68.037 -3.5798 31 15 3 0 0 0 0.70613 1 13501 13501 13.508 0 1 1802400 25209 9831 16582 16588 24947 24947 0.032541379433382644 LAVSSSCSLI 10 Unmodified _LAVSSSCSLI_ 0 0 0 REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.268798828125 2 490.260068 978.505582 NaN NaN NaN NaN NaN NaN NaN 137.51 1 132.87 132.37 133.37 -4.6413 0 0 0 0.19899 1 27140 27140 28.487 6.7402 1 + 25210 17100 16583 16589 24948 24948 0.015469880973796535 LAVVVFAFI 9 Unmodified _LAVVVFAFI_ 0 0 0 ENSG00000121853|ENST00000241256|GHSR ENSG00000121853|ENST00000241256|GHSR ENSG00000121853|ENST00000241256|GHSR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25482177734375 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 57.475 1 57.475 56.975 57.975 0 0 0 0 0.23508 1 10988 10988 5.2307 0 1 25211 3192 16584 16590 24949 24949 0.105296108390462 LAWHYYRFRPR 11 Unmodified _LAWHYYRFRPR_ 0 0 0 REV__ENST00000560023.1_1_15:34533432-34537514:-|nuORF REV__ENST00000560023.1_1_15:34533432-34537514:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2728881835938 3 522.280988 1563.82114 NaN NaN NaN NaN NaN NaN NaN 110.76 1 106.27 105.77 106.77 -4.4915 0 0 0 0.22632 1 21261 21261 0.58532 0.49048 1 + 25212 16562 16585 16591 24950 24950 0.06177747730816918 LAWILFSL 8 Unmodified _LAWILFSL_ 0 0 0 tr|U7SSF7|U7SSF7_FUSNURodshape-determiningproteinMreDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01251PE=4SV=1 tr|U7SSF7|U7SSF7_FUSNURodshape-determiningproteinMreDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01251PE=4SV=1 tr|U7SSF7|U7SSF7_FUSNURodshape-determiningproteinMreDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01251PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78875732421875 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 133.43 1 133.43 132.93 133.93 0 0 0 0 0.20568 1 26397 26397 20.871 0 1 25213 26101 16586 16592 24951 24951 0.08137037804954161 LAWPGNCL 8 Unmodified _LAWPGNCL_ 0 0 0 REV__ENST00000494673.1_1_6:31243358-31244615:+|nuORF REV__ENST00000494673.1_1_6:31243358-31244615:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.217529296875 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 86.456 1 82.727 82.227 83.227 -3.7289 0 0 0 0.21486 1 16532 16532 6.3541 0 1 + 25214 22369 16587 16593 24952 24952 -0.019854982088986617 LAWSLGLR 8 Unmodified _LAWSLGLR_ 0 0 0 ENST00000261313.2_1_12:118573839-118573938:+|nuORF ENST00000261313.2_1_12:118573839-118573938:+|nuORF ENST00000261313.2_1_12:118573839-118573938:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2254638671875 2 458.27417 914.533787 NaN NaN NaN NaN NaN NaN NaN 60.028 1 60.028 59.528 60.528 0 0 0 0 0.23366 1 11507 11507 0.0082765 0 1 25215 8295 16588 16594 24953 24953 0.07310098859613845 LAWSLLLL 8 Unmodified _LAWSLLLL_ 0 0 0 COLGALT2|p.K158Nfs*9|1|0.18|ENSG00000198756|chr1:183975115-183975115|T/-|frameshift_variant;ENSG00000198756|ENST00000361927|COLGALT2 COLGALT2|p.K158Nfs*9|1|0.18|ENSG00000198756|chr1:183975115-183975115|T/-|frameshift_variant COLGALT2|p.K158Nfs*9|1|0.18|ENSG00000198756|chr1:183975115-183975115|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16510009765625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 12.351 1 11.341 10.841 11.841 -1.0098 0 0 0 0.21486 1 1707 1707 0.45834 0 1 25216 634 16589 16595 24954 24954 0.11265324322005199 LAWWEGPG 8 Unmodified _LAWWEGPG_ 0 0 0 ENST00000489419.1_1_1:34066375-34068054:-|nuORF ENST00000489419.1_1_1:34066375-34068054:-|nuORF ENST00000489419.1_1_1:34066375-34068054:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2216796875 2 458.221603 914.428653 NaN NaN NaN NaN NaN NaN NaN 53.364 1 53.364 52.864 53.864 0 0 0 0 0.21486 1 10160 10160 6.3541 0 1 25217 10499 16590 16596 24955 24955 -0.03198442336804419 LAWWPVVP 8 Unmodified _LAWWPVVP_ 0 0 0 ENST00000436115.6_1_19:1383907-1389591:+|nuORF ENST00000436115.6_1_19:1383907-1389591:+|nuORF ENST00000436115.6_1_19:1383907-1389591:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1685791015625 3 323.184851 966.532724 NaN NaN NaN NaN NaN NaN NaN 89.346 1 85.554 85.054 86.054 -3.7926 0 0 0 0.21486 1 17484 17484 0.45834 0 1 25218 9835 16591 16597 24956 24956 0.048118844906980485 LAWWPVVP 8 Unmodified _LAWWPVVP_ 0 0 0 ENST00000436115.6_1_19:1383907-1389591:+|nuORF ENST00000436115.6_1_19:1383907-1389591:+|nuORF ENST00000436115.6_1_19:1383907-1389591:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1841125488281 3 323.184851 966.532724 NaN NaN NaN NaN NaN NaN NaN 90.523 1 86.479 85.979 86.979 -4.0443 0 0 0 0.21486 1 17244 17244 0.45834 0 1 25219 9835 16591 16597 24957 24957 0.048118844906980485 LAWWPVVP 8 Unmodified _LAWWPVVP_ 0 0 0 ENST00000436115.6_1_19:1383907-1389591:+|nuORF ENST00000436115.6_1_19:1383907-1389591:+|nuORF ENST00000436115.6_1_19:1383907-1389591:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.2060241699219 3 323.184851 966.532724 NaN NaN NaN NaN NaN NaN NaN 90.428 1 86.65 86.15 87.15 -3.7779 0 0 0 0.21486 1 17305 17305 0.45834 0 1 25220 9835 16591 16597 24958 24958 0.048118844906980485 LAYAIAPE 8 Unmodified _LAYAIAPE_ 0 0 0 ENSG00000142319|ENST00000270349|SLC6A3 ENSG00000142319|ENST00000270349|SLC6A3 ENSG00000142319|ENST00000270349|SLC6A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 424.2702331542969 2 424.231636 846.448719 NaN NaN NaN NaN NaN NaN NaN 130.9 1 126.13 125.63 126.63 -4.7725 0 0 0 0.23294 1 25197 25197 0.063987 0 1 25221 4414 16592 16598 24959 24959 0.01935308603140129 LAYEIAKHV 9 Unmodified _LAYEIAKHV_ 0 0 0 ENSG00000125675|ENST00000620443|GRIA3;nc|ENSG00000125675|P42263|GRIA3;GRIA3|p.S522Ffs*33|1|0.3|ENSG00000125675|chrX:123417460-123417461|-/T|frameshift_variant ENSG00000125675|ENST00000620443|GRIA3 ENSG00000125675|ENST00000620443|GRIA3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2816162109375 2 522.297842 1042.58113 NaN NaN NaN NaN NaN NaN NaN 147.64 1 147.64 147.14 148.14 0 0 0 0 0.23508 1 29534 29534 10.074 1.9184 1 25222 3375 16593 16599 24960 24960 0.061543333399413314 LAYHISGSI 9 Unmodified _LAYHISGSI_ 0 0 0 REV__ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant REV__ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25421142578125 2 480.761092 959.507631 0.64196 0.00030863 -0.025314 -1.217E-05 0.61665 0.00029646 480.7608314790103 107.61 0.37733 103.48 103.29 103.66 -4.135 17 10 2 0 0 0 0.49001 1 20717 20717 36.044 5.8194 1 669720 + 25223 18579 16594 16600 24961 24961 0.026257848974637454 LAYHVQNEI 9 Unmodified _LAYHVQNEI_ 0 0 0 ENSG00000167014|ENST00000340827|TERB2 ENSG00000167014|ENST00000340827|TERB2 ENSG00000167014|ENST00000340827|TERB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.781982421875 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 137.71 1 132.87 132.37 133.37 -4.84 0 0 0 0.19638 1 26535 26535 2.8827 2.0075 1 25224 5777 16595 16601 24962 24962 0.01120554954900399 LAYKKQRY 8 Unmodified _LAYKKQRY_ 0 0 0 REV__SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant REV__SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.0732116699219 3 357.209948 1068.60801 0.23474 8.3851E-05 -0.57699 -0.00020611 -0.34225 -0.00012226 357.2096794514518 73.354 0.84706 69.678 69.26 70.107 -3.6764 57 23 3 0 0 0 1.0265 1 13831 13831 3.9444 1.6616 1 9726700 + 25225 16813 16596 16602 24963 24963 0.07645441951149223 LAYKKQRY 8 Unmodified _LAYKKQRY_ 0 0 0 REV__SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant REV__SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 357.209948 1068.60801 -0.49044 -0.00017519 0.23644 8.446E-05 -0.254 -9.073E-05 357.2099698494519 69.975 0.75124 69.975 69.524 70.275 0 0.18133 0.00035855 NaN 3.9444 65 20 4 NaN NaN NaN NaN 0 NaN NaN 0 11175000 + 25226 16813 16596 16602 0.07645441951149223 LAYKKQRY 8 Unmodified _LAYKKQRY_ 0 0 0 REV__SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant REV__SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.209948 1068.60801 -0.37743 -0.00013482 -0.035699 -1.2752E-05 -0.41313 -0.00014757 357.20991015982713 73.04 0.75262 69.73 69.384 70.137 -3.3107 -0.063994 6.6913E-05 NaN 3.9444 62 20 4 NaN NaN NaN NaN 0 NaN NaN 0 10975000 + 25227 16813 16596 16602 0.07645441951149223 LAYKKQRY 8 Unmodified _LAYKKQRY_ 0 0 0 REV__SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant REV__SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.209948 1068.60801 -0.31489 -0.00011248 -0.049696 -1.7752E-05 -0.36459 -0.00013023 357.2098969471849 73.342 0.86815 69.792 69.327 70.195 -3.5498 -0.0013434 5.1913E-05 NaN 3.9444 73 24 4 NaN NaN NaN NaN 0 NaN NaN 0 12941000 + 25228 16813 16596 16602 0.07645441951149223 LAYKLLIQ 8 Unmodified _LAYKLLIQ_ 0 0 0 nc|ENSG00000117425|Q9Y6C5-2|PTCH2;PTCH2|p.A1145Hfs*12|2|0.31|ENSG00000117425|chr1:44822594-44822594|C/-|frameshift_variant;ENSG00000117425|ENST00000372192|PTCH2 nc|ENSG00000117425|Q9Y6C5-2|PTCH2 nc|ENSG00000117425|Q9Y6C5-2|PTCH2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23565673828125 2 481.307678 960.600803 NaN NaN NaN NaN NaN NaN NaN 54.386 1 54.386 53.886 54.886 0 0 0 0 0.21486 1 10369 10369 0.79363 0.79363 1 25229 2986 16597 16603 24964 24964 0.11892709350718178 LAYLVLRYRVK 11 Unmodified _LAYLVLRYRVK_ 0 0 0 nc|ENSG00000172350|Q9H172-3|ABCG4;nc|ENSG00000172350|Q9H172-2|ABCG4;ENSG00000172350|ENST00000619701|ABCG4;nc|ENSG00000172350|Q9H172-4|ABCG4 nc|ENSG00000172350|Q9H172-3|ABCG4 nc|ENSG00000172350|Q9H172-3|ABCG4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24951171875 3 465.294123 1392.86054 NaN NaN NaN NaN NaN NaN NaN 132.86 1 128 127.5 128.5 -4.8527 0 0 0 0.22632 1 25519 25519 0.0059557 0 1 25230 6211 16598 16604 24965 24965 0.17982454961656913 LCASDYRQ 8 Unmodified _LCASDYRQ_ 0 0 0 REV__ENST00000467530.5_1_1:85960437-85960545:-|nuORF REV__ENST00000467530.5_1_1:85960437-85960545:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7433776855469 2 478.218734 954.422915 -0.20794 -9.9439E-05 0.28735 0.00013742 0.079415 3.7978E-05 478.2187656600288 24.807 0.44322 22.953 22.744 23.187 -1.8534 19 12 2 0 0 0 0.96386 1 4077 4077 10.074 0 1 1143100 + 25231 21980 16599 16605 24966 24966 -0.056119089107937725 LCCCCCGGG 9 Unmodified _LCCCCCGGG_ 0 0 0 nc|ENSG00000138650|Q9P2E7-2|PCDH10;ENSG00000138650|ENST00000264360|PCDH10;PCDH10|p.S768L|1|0.34|ENSG00000138650|chr4:133152443-133152443|C/T|missense_variant nc|ENSG00000138650|Q9P2E7-2|PCDH10 nc|ENSG00000138650|Q9P2E7-2|PCDH10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 818.7211303710938 1 818.212219 817.204942 -0.20879 -0.00017083 0.038721 3.1682E-05 -0.17007 -0.00013915 818.213737768927 4.4069 0.5731 3.7807 3.5121 4.0852 -0.62626 24 15 2 0 0 0 0.65565 1 85 85 0 0 1 579670 25232 4194 16600 16606 24967 24967 -0.21097204692409832 LCCCCCSS 8 Unmodified _LCCCCCSS_ 0 0 0 ENSG00000180758|ENST00000377411|GPR157 ENSG00000180758|ENST00000377411|GPR157 ENSG00000180758|ENST00000377411|GPR157 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1078186035156 2 411.10958 820.204608 NaN NaN NaN NaN NaN NaN NaN 146.36 1 141.67 141.17 142.17 -4.6868 0 0 0 0.21486 1 29026 29026 0.69038 0.69038 1 25233 6692 16601 16607 24968 24968 -0.2126862441227786 LCCCCYQSK 9 Unmodified _LCCCCYQSK_ 0 0 0 nc|ENSG00000151617|P25101-4|EDNRA;ENSG00000151617|ENST00000651419|EDNRA;nc|ENSG00000151617|P25101-5|EDNRA nc|ENSG00000151617|P25101-4|EDNRA nc|ENSG00000151617|P25101-4|EDNRA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 525.6997680664062 2 525.697408 1049.38026 NaN NaN NaN NaN NaN NaN NaN 170.17 1 170.17 169.67 170.67 0 0 0 0 0.23508 1 34978 34978 7.2892 2.0586 1 25234 4877 16602 16608 24969 24969 -0.14245086626556258 LCCHCHSGCCN 11 Unmodified _LCCHCHSGCCN_ 0 0 0 ENST00000409881.1_1_7:30898614-30931617:+|nuORF ENST00000409881.1_1_7:30898614-30931617:+|nuORF ENST00000409881.1_1_7:30898614-30931617:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.258056640625 2 590.184674 1178.35479 NaN NaN NaN NaN NaN NaN NaN 103.88 1 99.535 99.035 100.03 -4.346 0 0 0 0.22632 1 19901 19901 0 0 1 25235 9570 16603 16609 24970 24970 -0.22724884420586022 LCDPDCKNH 9 Unmodified _LCDPDCKNH_ 0 0 0 ENSG00000146530|ENST00000275358|VWDE;nc|ENSG00000146530|Q8N2E2-3|VWDE ENSG00000146530|ENST00000275358|VWDE ENSG00000146530|ENST00000275358|VWDE MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2631225585938 2 522.715501 1043.41645 0.54571 0.00028525 0.01398 7.3076E-06 0.55969 0.00029256 522.7155057459576 31.52 0.42438 29.372 29.126 29.551 -2.1483 15 11 2 0 0 0 0.71527 1 5406 5406 19.257 8.4331 1 331390 25236 4659 16604 16610 24971 24971 -0.10352170133819527 LCFCIVLP 8 Unmodified _LCFCIVLP_ 0 0 0 REV__ENST00000513635.1_1_5:40681836-40685490:+|nuORF REV__ENST00000513635.1_1_5:40681836-40685490:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7600402832031 2 454.242635 906.470717 NaN NaN NaN NaN NaN NaN NaN 88.463 1 84.671 84.171 85.171 -3.7926 0 0 0 0.23294 1 17306 17306 0.25148 0 1 + 25237 22570 16605 16611 24972 24972 0.01374073755698646 LCFIVHSP 8 Unmodified _LCFIVHSP_ 0 0 0 FBXL17|p.C627*|1|0.1|ENSG00000145743|chr5:107881121-107881121|A/-|frameshift_variant;ENSG00000145743|ENST00000542267|FBXL17 FBXL17|p.C627*|1|0.1|ENSG00000145743|chr5:107881121-107881121|A/-|frameshift_variant FBXL17|p.C627*|1|0.1|ENSG00000145743|chr5:107881121-107881121|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2360534667969 2 458.241481 914.468409 NaN NaN NaN NaN NaN NaN NaN 33.225 1 31.009 30.509 31.509 -2.2158 0 0 0 0.23749 1 5782 5782 0.12286 0 1 25238 4619 16606 16612 24973 24973 0.007753613422551098 LCFLSKKKK 9 Unmodified _LCFLSKKKK_ 0 0 0 REV__ENST00000308488.10_1_11:77372778-77372916:-|nuORF REV__ENST00000308488.10_1_11:77372778-77372916:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7869262695312 2 547.841362 1093.66817 NaN NaN NaN NaN NaN NaN NaN 10.588 1 9.5217 9.0217 10.022 -1.0664 0 0 0 0.23508 1 1153 1153 0.6015 0.6015 1 + 25239 20463 16607 16613 24974 24974 0.12508416290006608 LCFTHYSDDC 10 Unmodified _LCFTHYSDDC_ 0 0 0 REV__nc|ENSG00000073614|P29375-2|KDM5A REV__nc|ENSG00000073614|P29375-2|KDM5A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2913818359375 2 602.225899 1202.43724 NaN NaN NaN NaN NaN NaN NaN 107.12 1 102.71 102.21 103.21 -4.4121 0 0 0 2.8426 1 20551 20551 0.0013812 0.0013812 1 + 25240 14302 16608 16614 24975 24975 -0.15587624544787104 LCHHDRWDY 9 Unmodified _LCHHDRWDY_ 0 0 0 nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179;GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant;GPR179|p.K1289Rfs*12|1|0.29|ENSG00000277399|chr17:38329703-38329703|T/-|frameshift_variant;GPR179|p.R1290Efs*59|1|0.25|ENSG00000277399|chr17:38329702-38329703|-/T|frameshift_variant nc|ENSG00000277399|Q6PRD1|GPR179 nc|ENSG00000277399|Q6PRD1|GPR179 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.75634765625 2 622.766914 1243.51928 NaN NaN NaN NaN NaN NaN NaN 131.21 1 126.57 126.07 127.07 -4.6359 0 0 0 0.23277 1 25858 25858 13.906 3.0821 1 25241 8036 16609 16615 24976 24976 -0.09274341350828763 LCIKFIGLSHL 11 Unmodified _LCIKFIGLSHL_ 0 0 0 ENST00000375859.3_1_9:91092620-91092770:+|nuORF ENST00000375859.3_1_9:91092620-91092770:+|nuORF ENST00000375859.3_1_9:91092620-91092770:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.759033203125 2 622.365201 1242.71585 NaN NaN NaN NaN NaN NaN NaN 73.308 1 69.77 69.27 70.27 -3.5385 0 0 0 0.22632 1 13913 13913 0.094841 0.068635 1 25242 9241 16610 16616 24977 24977 0.10420070490204125 LCIKPKTI 8 Unmodified _LCIKPKTI_ 0 0 0 nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE;ENST00000487422.1_1_X:154753982-154774937:-|nuORF;nc|ENSG00000185973|Q9NVH6-4|TMLHE;nc|ENSG00000185973|Q9NVH6-2|TMLHE;nc|ENSG00000185973|Q9NVH6-3|TMLHE nc|ENSG00000185973|Q9NVH6-7|TMLHE nc|ENSG00000185973|Q9NVH6-7|TMLHE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2406921386719 2 458.288431 914.562309 0.13217 6.0572E-05 0.88229 0.00040434 1.0145 0.00046491 458.28863611636314 94.484 0.59552 90.292 90.018 90.614 -4.1911 23 16 2 0 0 0 0.79017 1 18061 18061 4.756 2.1785 1 1300500 25243 7023 16611 16617 24978 24978 0.10161080444538584 LCLGDFPMPFI 11 Unmodified _LCLGDFPMPFI_ 0 0 0 nc|ENSG00000186431|P24071-9|FCAR;nc|ENSG00000186431|P24071-8|FCAR;nc|ENSG00000186431|P24071-5|FCAR;nc|ENSG00000186431|P24071-11|FCAR;nc|ENSG00000186431|P24071-10|FCAR nc|ENSG00000186431|P24071-9|FCAR nc|ENSG00000186431|P24071-9|FCAR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.9090576171875 4 313.908073 1251.60319 0.57833 0.00018154 0.23796 7.4697E-05 0.81629 0.00025624 313.90804600175596 23.703 0.31174 22.15 21.94 22.252 -1.5532 13 8 2 0 0 0 0.65515 1 4095 4095 3.0723 0 1 234430 25244 12520 16612 16618 24979 24979 -0.012549462981496617 LCMKHLTDHY 10 Unmodified _LCMKHLTDHY_ 0 0 0 TMEM63C|p.R636H|1|0.36|ENSG00000165548|chr14:77249327-77249327|G/A|missense_variant TMEM63C|p.R636H|1|0.36|ENSG00000165548|chr14:77249327-77249327|G/A|missense_variant TMEM63C|p.R636H|1|0.36|ENSG00000165548|chr14:77249327-77249327|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7644653320312 2 630.796826 1259.5791 NaN NaN NaN NaN NaN NaN NaN 104.39 1 100.33 99.833 100.83 -4.0543 0 0 0 2.8426 1 20074 20074 0.20733 0.14346 1 25245 25862 16613 16619 24980 24980 -0.04030786731823355 LCMVVPSWF 9 Unmodified _LCMVVPSWF_ 0 0 0 REV__ENST00000535682.1_17:73314626-73315194:-|nuORF REV__ENST00000535682.1_17:73314626-73315194:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2642211914062 2 541.264099 1080.51364 NaN NaN NaN NaN NaN NaN NaN 176.04 1 171.25 170.75 171.75 -4.7898 0 0 0 0.23508 1 35995 35995 4.756 0 1 + 25246 22810 16614 16620 24981 24981 -0.023391561868493227 LCNGPWAL 8 Unmodified _LCNGPWAL_ 0 0 0 ENST00000494673.1_1_6:31243358-31244615:+|nuORF ENST00000494673.1_1_6:31243358-31244615:+|nuORF ENST00000494673.1_1_6:31243358-31244615:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2166442871094 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 70.069 1 66.602 66.102 67.102 -3.467 0 0 0 0.21486 1 13262 13262 11.114 0.93107 1 25247 10560 16615 16621 24982 24982 -0.019854982088986617 LCPREQGL 8 Unmodified _LCPREQGL_ 0 0 0 ENST00000323469.4_1_19:2716179-2716506:-|nuORF ENST00000323469.4_1_19:2716179-2716506:-|nuORF ENST00000323469.4_1_19:2716179-2716506:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22772216796875 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 67.523 1 64.027 63.527 64.527 -3.4965 0 0 0 0.23182 1 12670 12670 0.25148 0.2432 1 25248 8725 16616 16622 24983 24983 0.003732718485366604 LCSFPAFYF 9 Unmodified _LCSFPAFYF_ 0 0 0 REV__EPHA4|p.L9P|1|0.37|ENSG00000116106|chr2:221572223-221572223|A/G|missense_variant REV__EPHA4|p.L9P|1|0.37|ENSG00000116106|chr2:221572223-221572223|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77783203125 2 547.754421 1093.49429 NaN NaN NaN NaN NaN NaN NaN 154.1 1 148.83 148.33 149.33 -5.2669 0 0 0 0.23508 1 29879 29879 7.9102 2.1783 1 + 25249 23493 16617 16623 24984 24984 -0.0487178920614042 LCSLKAMPCI 10 Unmodified _LCSLKAMPCI_ 0 0 0 REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2047424316406 3 360.18677 1077.53848 -0.30476 -0.00010977 0.87656 0.00031572 0.5718 0.00020595 360.1870626916269 17.712 0.32637 17.712 17.589 17.915 0 16 8 3 0 0 0 0.91149 1 2806 2806 3.5871 1.9948 1 917980 + 25250 23429 16618 16624 24985 24985 0.002811556241795188 LCSLKAMPCI 10 Unmodified _LCSLKAMPCI_ 0 0 0 REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 360.18677 1077.53848 -0.19094 -6.8772E-05 0.63488 0.00022868 0.44395 0.0001599 360.1870141983991 19.144 0.3115 17.748 17.607 17.919 -1.3966 0.022694 -6.3288E-05 NaN 1.7423 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 603210 + 25251 23429 16618 16624 0.002811556241795188 LCTLINKTEIL 11 Unmodified _LCTLINKTEIL_ 0 0 0 REV__ENSG00000171657|ENST00000302548|GPR82 REV__ENSG00000171657|ENST00000302548|GPR82 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7587280273438 2 630.865231 1259.71591 NaN NaN NaN NaN NaN NaN NaN 104.07 1 100.02 99.516 100.52 -4.0543 0 0 0 0.22632 1 20013 20013 0.0059557 0 1 + 25252 18239 16619 16625 24986 24986 0.09644025699526537 LDAAEPGFFT 10 Unmodified _LDAAEPGFFT_ 0 0 0 ENST00000526337.5_3_11:4624559-4629443:-|nuORF;ENST00000300747.9_1_11:4626648-4629488:-|nuORF ENST00000526337.5_3_11:4624559-4629443:-|nuORF ENST00000526337.5_3_11:4624559-4629443:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.04962158203125 3 356.506319 1066.49713 -0.41087 -0.00014648 0.33318 0.00011878 -0.077686 -2.7696E-05 356.506453134444 56.026 0.5304 56.026 55.621 56.151 0 26 14 2 0 0 0 0.91149 1 10678 10678 3.3196 0 1 1388800 25253 8549 16620 16626 24987 24987 -0.03346242547604561 LDAALQDCWLL 11 Unmodified _LDAALQDCWLL_ 0 0 0 ENST00000534532.6_1_11:134054823-134055313:-|nuORF ENST00000534532.6_1_11:134054823-134055313:-|nuORF ENST00000534532.6_1_11:134054823-134055313:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7788696289062 2 630.818281 1259.62201 NaN NaN NaN NaN NaN NaN NaN 147.57 1 147.57 147.07 148.07 0 0 0 0 0.21129 1 29519 29519 16.149 1.7437 1 25254 11007 16621 16627 24988 24988 0.002583065972658005 LDAEKWFDR 9 Unmodified _LDAEKWFDR_ 0 0 0 REV__EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant REV__EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2604370117188 2 590.293288 1178.57202 NaN NaN NaN NaN NaN NaN NaN 127.33 1 122.54 122.04 123.04 -4.7958 0 0 0 0.23508 1 24441 24441 9.3831 2.0939 1 + 25255 18840 16622 16628 24989 24989 -0.01012060016387295 LDAEKWFDRE 10 Unmodified _LDAEKWFDRE_ 0 0 0 REV__EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant REV__EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.217529296875 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 46.104 1 46.104 45.604 46.604 0 0 0 0 0.22588 1 8680 8680 2.8433 0.21205 1 + 25256 18840 16623 16629 24990 24990 -0.026887096788186682 LDAIEEFEI 9 Unmodified _LDAIEEFEI_ 0 0 0 REV__ENSG00000165494|ENST00000690938|PCF11 REV__ENSG00000165494|ENST00000690938|PCF11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2711181640625 2 539.76878 1077.52301 -1.3822 -0.00074608 -0.93226 -0.00050321 -2.3145 -0.0012493 539.768230565127 16.31 1.4889 14.956 14.512 16.001 -1.3534 138 42 4 0 0 0 0.73814 1 2266 2266 3.9444 0 1 6965100 + 25257 17775 16624 16630 24991 24991 -0.012653930960141224 LDALFRLHG 9 Unmodified _LDALFRLHG_ 0 0 0 ENSG00000267221|ENST00000587304|C17orf113 ENSG00000267221|ENST00000587304|C17orf113 ENSG00000267221|ENST00000587304|C17orf113 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2594604492188 2 521.295633 1040.57671 -0.21069 -0.00010983 -1.146 -0.00059742 -1.3567 -0.00070725 521.2953642223874 122.57 0.64562 117.86 117.59 118.23 -4.7159 32 18 3 0 0 0 0.57447 1 23542 23542 14.838 1.3304 1 2293900 25258 7986 16625 16631 24992 24992 0.058048689170163925 LDALFRLHG 9 Unmodified _LDALFRLHG_ 0 0 0 ENSG00000267221|ENST00000587304|C17orf113 ENSG00000267221|ENST00000587304|C17orf113 ENSG00000267221|ENST00000587304|C17orf113 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.295633 1040.57671 -0.020849 -1.0868E-05 0.28807 0.00015017 0.26722 0.0001393 521.7974421396802 122.5 0.56521 117.96 117.63 118.2 -4.5476 0.025104 0.00035936 NaN 14.838 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1913400 25259 7986 16625 16631 0.058048689170163925 LDALFRLHG 9 Unmodified _LDALFRLHG_ 0 0 0 ENSG00000267221|ENST00000587304|C17orf113 ENSG00000267221|ENST00000587304|C17orf113 ENSG00000267221|ENST00000587304|C17orf113 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.295633 1040.57671 0.35374 0.0001844 0.41061 0.00021405 0.76435 0.00039845 521.2960120787006 122.51 0.70639 117.98 117.66 118.36 -4.5305 0.047183 0.00048712 NaN 14.838 25 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1340000 25260 7986 16625 16631 0.058048689170163925 LDALLAALHSQ 11 Unmodified _LDALLAALHSQ_ 0 0 0 nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;MROH1|p.P1048Qfs*9|1|0.21|ENSG00000179832|chr8:144248894-144248894|C/-|frameshift_variant;nc|ENSG00000179832|Q8NDA8-7|MROH1;MROH1|p.L327Wfs*2|1|0.12|ENSG00000179832|chr8:144199148-144199148|C/-|frameshift_variant;nc|ENSG00000179832|Q8NDA8-6|MROH1;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;ENSG00000179832|ENST00000326134|MROH1 nc|ENSG00000179832|Q8NDA8-2|MROH1;ENSG00000179832|ENST00000326134|MROH1 nc|ENSG00000179832|Q8NDA8-2|MROH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3287353515625 2 576.324588 1150.63462 0.30686 0.00017685 3.1469 0.0018137 3.4538 0.0019905 576.8272833412773 170.7 0.10555 170.7 170.65 170.76 0 4 2 2 0 0 0 0.67257 1 35127 35127 13.615 0.74226 1 7684700 25261 10979;6645 16626 16632 24993 24993 0.06533086051786086 LDALLEKRE 9 Unmodified _LDALLEKRE_ 0 0 0 REV__nc|ENSG00000108469|O94762-2|RECQL5 REV__nc|ENSG00000108469|O94762-2|RECQL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7966918945312 2 543.811313 1085.60807 0.49782 0.00027072 -4.4393 -0.0024142 -3.9415 -0.0021434 543.8073789809805 156.82 0.17226 151.55 151.45 151.62 -5.2712 6 4 2 0 0 0 0.52396 1 30430 30430 18.146 1.2041 1 498880 + 25262 15124 16627 16633 24994 24994 0.06869397160471635 LDALPVLLEVP 11 Unmodified _LDALPVLLEVP_ 0 0 0 ENST00000391858.8_1_1:231473224-231473434:+|nuORF ENST00000391858.8_1_1:231473224-231473434:+|nuORF ENST00000391858.8_1_1:231473224-231473434:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2549438476562 2 589.855189 1177.69583 NaN NaN NaN NaN NaN NaN NaN 104.48 1 104.48 103.98 104.98 0 0 0 0 0.23379 1 20532 20532 5.2969 0 1 25263 9362 16628 16634 24995 24995 0.11408598031243855 LDARSGEHPP 10 Unmodified _LDARSGEHPP_ 0 0 0 REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4 REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2583618164062 2 539.767437 1077.52032 -0.39058 -0.00021082 0.61866 0.00033393 0.22808 0.00012311 539.7677454969887 16.294 1.4492 15.072 14.609 16.058 -1.2219 128 41 4 0 0 0 0.7409 1 2430 2430 7.609 7.609 1 8310700 + 25264 16952 16629 16635 24996 24996 -0.015338037102765156 LDCCCCCCCE 10 Unmodified _LDCCCCCCCE_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 549.447998046875 2 549.121505 1096.22846 NaN NaN NaN NaN NaN NaN NaN 167.44 1 162.49 161.99 162.99 -4.948 0 0 0 0.22588 1 32937 32937 0.40072 0.40072 1 25265 6036 16630 16636 24997 24997 -0.3158089503242536 LDCCNDGCSDS 11 Unmodified _LDCCNDGCSDS_ 0 0 0 nc|ENSG00000165699|Q92574-2|TSC1;ENSG00000165699|ENST00000298552|TSC1 nc|ENSG00000165699|Q92574-2|TSC1 nc|ENSG00000165699|Q92574-2|TSC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 566.1159057617188 2 566.173006 1130.33146 NaN NaN NaN NaN NaN NaN NaN 171.99 1 167.09 166.59 167.59 -4.9027 0 0 0 0.22632 1 34095 34095 0 0 1 25266 5654 16631 16637 24998 24998 -0.2284932845259391 LDCGTRKG 8 Unmodified _LDCGTRKG_ 0 0 0 REV__ENST00000526752.1_1_8:145582883-145584502:+|nuORF REV__ENST00000526752.1_1_8:145582883-145584502:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2432556152344 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 115.46 1 115.46 114.96 115.96 0 0 0 0 0.22699 1 22724 22724 0.62683 0 1 + 25267 22692 16632 16638 24999 24999 -0.012835877025963782 LDCNARLLY 9 Unmodified _LDCNARLLY_ 0 0 0 REV__TLK2|p.D237Y|1|0.23|ENSG00000146872|chr17:62553744-62553744|G/T|missense_variant REV__TLK2|p.D237Y|1|0.23|ENSG00000146872|chr17:62553744-62553744|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2806396484375 2 540.778959 1079.54336 0.30279 0.00016374 -2.9445 -0.0015923 -2.6417 -0.0014286 541.2771622274535 159.73 0.17641 159.73 159.65 159.83 0 5 4 2 0 0 0 0.62102 1 32078 32078 11.64 1.5664 1 1331400 + 25268 24808 16633 16639 25000 25000 0.006774990828262162 LDCNARLLY 9 Unmodified _LDCNARLLY_ 0 0 0 REV__TLK2|p.D237Y|1|0.23|ENSG00000146872|chr17:62553744-62553744|G/T|missense_variant REV__TLK2|p.D237Y|1|0.23|ENSG00000146872|chr17:62553744-62553744|G/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.778959 1079.54336 0.30279 0.00016374 -2.9445 -0.0015923 -2.6417 -0.0014286 541.2771622274535 159.73 0.17641 159.73 159.65 159.83 0 0 0 NaN 11.64 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1331400 + 25269 24808 16633 16639 0.006774990828262162 LDDAQRTLY 9 Unmodified _LDDAQRTLY_ 0 0 0 ENST00000491507.1_1_3:75765690-75790926:-|nuORF;ENSG00000227124|ENST00000652011|ZNF717 ENST00000491507.1_1_3:75765690-75790926:-|nuORF ENST00000491507.1_1_3:75765690-75790926:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7781372070312 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 129.41 1 124.78 124.28 125.28 -4.6292 0 0 0 0.23508 1 25504 25504 12.532 0 1 25270 7797 16634 16640 25001 25001 -0.0026405277030789875 LDDEEEAELVP 11 Unmodified _LDDEEEAELVP_ 0 0 0 nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF nc|ENSG00000110719|Q13488-2|TCIRG1 nc|ENSG00000110719|Q13488-2|TCIRG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7539672851562 2 629.787898 1257.56124 0.23037 0.00014508 -1.5799 -0.00099502 -1.3496 -0.00084994 630.288219321572 95.16 1.003 95.16 94.798 95.801 0 42 28 3 0 0 0 0.69278 1 18681 18681 12.241 2.8575 1 2704500 25271 2584 16635 16641 25002 25002 -0.05723551972005225 LDDEEEAELVP 11 Unmodified _LDDEEEAELVP_ 0 0 0 nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF nc|ENSG00000110719|Q13488-2|TCIRG1 nc|ENSG00000110719|Q13488-2|TCIRG1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 629.787898 1257.56124 0.23037 0.00014508 -1.5799 -0.00099502 -1.3496 -0.00084994 630.288219321572 95.16 1.003 95.16 94.798 95.801 0 0 0 NaN 12.241 42 28 3 NaN NaN NaN NaN 0 NaN NaN 0 2704500 25272 2584 16635 16641 -0.05723551972005225 LDDEEEDKDP 10 Unmodified _LDDEEEDKDP_ 0 0 0 REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2818603515625 2 602.74623 1203.47791 NaN NaN NaN NaN NaN NaN NaN 97.824 1 93.726 93.226 94.226 -4.0978 0 0 0 2.8426 1 19203 19203 0.013265 0.0073095 1 + 25273 21528 16636 16642 25003 25003 -0.11569288419832446 LDDEPEEPP 9 Unmodified _LDDEPEEPP_ 0 0 0 nc|ENSG00000168502|Q9Y4B5-2|MTCL1;MTCL1|p.P1448Afs*83|1|0.4|ENSG00000168502|chr18:8824888-8824889|-/G|frameshift_variant;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;MTCL1|p.P1841Lfs*22|1|0.05|ENSG00000168502|chr18:8826071-8826071|C/-|frameshift_variant;MTCL1|p.L1858Wfs*5|1|0.26|ENSG00000168502|chr18:8826125-8826125|C/-|frameshift_variant;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;nc|ENSG00000168502|Q9Y4B5-4|MTCL1 nc|ENSG00000168502|Q9Y4B5-2|MTCL1 nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 521.1766357421875 2 520.724569 1039.43459 -0.46112 -0.00024012 -2.0923 -0.0010895 -2.5534 -0.0013296 521.2249247898802 27.968 0.52308 26.213 25.83 26.353 -1.7552 20 14 2 0 0 0 0.87258 1 4631 4631 1.8442 0 1 891980 25274 5915 16637 16643 25004 25004 -0.08355433406472912 LDDGGIIQM 9 Unmodified _LDDGGIIQM_ 0 0 0 REV__nc|ENSG00000099256|Q9NRG1-2|PRTFDC1 REV__nc|ENSG00000099256|Q9NRG1-2|PRTFDC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24462890625 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 118.73 1 114.23 113.73 114.73 -4.502 0 0 0 0.19679 1 23411 23411 0.96228 0.954 1 + 25275 14631 16638 16644 25005 25005 -0.023178714537721135 LDDITEPI 8 Unmodified _LDDITEPI_ 0 0 0 REV__VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant REV__VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2375183105469 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 117.02 1 112.44 111.94 112.94 -4.5815 0 0 0 0.2074 1 22452 22452 19.439 0 1 + 25276 15943 16639 16645 25006 25006 -0.0009733381323258072 LDDITEPI 8 Unmodified _LDDITEPI_ 0 0 0 REV__VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant REV__VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23834228515625 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 116.79 1 112.43 111.93 112.93 -4.3585 0 0 0 0.2074 1 22483 22483 19.439 0 1 + 25277 15943 16639 16645 25007 25007 -0.0009733381323258072 LDDIYHYKH 9 Unmodified _LDDIYHYKH_ 0 0 0 REV__ENSG00000136878|ENST00000372429|USP20 REV__ENSG00000136878|ENST00000372429|USP20 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2953491210938 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 108.12 1 103.99 103.49 104.49 -4.135 0 0 0 0.23508 1 20802 20802 7.2892 2.5332 1 + 25278 16359 16640 16646 25008 25008 -0.021160600163966592 LDDKMQKRRPK 11 Unmodified _LDDKMQKRRPK_ 0 0 0 ENST00000583155.1_1_1:192544922-192545060:+|nuORF;ENST00000474373.1_1_1:192544922-192545979:+|nuORF;ENST00000462589.1_1_1:192544922-192545496:+|nuORF;ENST00000498352.1_1_1:192544922-192545979:+|nuORF;nc|ENSG00000090104|Q08116-2|RGS1;ENSG00000090104|ENST00000367459|RGS1 ENST00000583155.1_1_1:192544922-192545060:+|nuORF ENST00000583155.1_1_1:192544922-192545060:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 472.2580871582031 3 472.26976 1413.78745 NaN NaN NaN NaN NaN NaN NaN 159.83 1 154.6 154.1 155.1 -5.2299 0 0 0 0.22632 1 31026 31026 0.172 0 1 25279 1779 16641 16647 25009 25009 0.09710958176742679 LDDKQRKY 8 Unmodified _LDDKQRKY_ 0 0 0 nc|ENSG00000106113|Q13324-2|CRHR2;nc|ENSG00000106113|Q13324-6|CRHR2;nc|ENSG00000106113|Q13324-5|CRHR2;nc|ENSG00000106113|Q13324-4|CRHR2;nc|ENSG00000106113|Q13324-3|CRHR2;ENSG00000106113|ENST00000471646|CRHR2 nc|ENSG00000106113|Q13324-2|CRHR2 nc|ENSG00000106113|Q13324-2|CRHR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2713623046875 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 111.28 1 106.85 106.35 107.35 -4.4231 0 0 0 0.21039 1 21923 21923 16.942 1.0951 1 25280 12274 16642 16648 25010 25010 0.03175957329199264 LDDKRYRYAFH 11 Unmodified _LDDKRYRYAFH_ 0 0 0 TBX10|p.P319Rfs*20|1|0.14|ENSG00000167800|chr11:67631807-67631807|G/-|frameshift_variant;ENSG00000167800|ENST00000335385|TBX10 TBX10|p.P319Rfs*20|1|0.14|ENSG00000167800|chr11:67631807-67631807|G/-|frameshift_variant TBX10|p.P319Rfs*20|1|0.14|ENSG00000167800|chr11:67631807-67631807|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3800048828125 2 742.375675 1482.7368 NaN NaN NaN NaN NaN NaN NaN 163.69 1 163.69 163.19 164.19 0 0 0 0 0.2367 1 33013 33013 2.9952 0 1 25281 5852 16643 16649 25011 25011 0.014737521234110318 LDDLFQIC 8 Unmodified _LDDLFQIC_ 0 0 0 ENSG00000110756|ENST00000349215|HPS5;ENST00000352460.7_1_11:18303495-18317646:-|nuORF;nc|ENSG00000110756|Q9UPZ3-2|HPS5 ENSG00000110756|ENST00000349215|HPS5 ENSG00000110756|ENST00000349215|HPS5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 483.5987854003906 2 483.733686 965.452819 NaN NaN NaN NaN NaN NaN NaN 162.34 1 157.55 157.05 158.05 -4.7898 0 0 0 0.21486 1 32304 32304 5.2307 0 1 25282 2587 16644 16650 25012 25012 -0.03128969965473516 LDDLNYNTD 9 Unmodified _LDDLNYNTD_ 0 0 0 REV__tr|U7SU18|U7SU18_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00984PE=4SV=1 REV__tr|U7SU18|U7SU18_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00984PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2802734375 2 541.735468 1081.45638 -0.036455 -1.9749E-05 0.15641 8.4735E-05 0.11996 6.4986E-05 541.7354798568539 82.691 0.76497 78.993 78.481 79.246 -3.6985 38 21 2 0 0 0 0.84208 1 15684 15684 7.2892 3.3448 1 1769100 + 25283 25136 16645 16651 25013 25013 -0.08108628657896588 LDDRTVYY 8 Unmodified _LDDRTVYY_ 0 0 0 REV__nc|ENSG00000197442|Q99683-2|MAP3K5 REV__nc|ENSG00000197442|Q99683-2|MAP3K5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6956176757812 2 522.753464 1043.49238 -0.17441 -9.1175E-05 0.45068 0.0002356 0.27627 0.00014442 522.7537491254715 115.66 0.82491 111.18 110.71 111.53 -4.4726 45 23 3 0 0 0 0.6199 1 22802 22802 20.871 0 1 2705000 + 25284 19336 16646 16652 25014 25014 -0.027631266903881624 LDDVPPTMR 9 Unmodified _LDDVPPTMR_ 0 0 0 REV__PHF3|p.A1126T|1|0.12|ENSG00000118482|chr6:63706037-63706037|G/A|missense_variant REV__PHF3|p.A1126T|1|0.12|ENSG00000118482|chr6:63706037-63706037|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2623901367188 2 522.263142 1042.51173 NaN NaN NaN NaN NaN NaN NaN 128.52 1 123.71 123.21 124.21 -4.817 0 0 0 0.23508 1 24671 24671 9.3831 0 1 + 25285 24461 16647 16653 25015 25015 -0.007824936711358532 LDDVVAFRLN 10 Unmodified _LDDVVAFRLN_ 0 0 0 ENSG00000154252|ENST00000192314|GAL3ST2 ENSG00000154252|ENST00000192314|GAL3ST2 ENSG00000154252|ENST00000192314|GAL3ST2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71270751953125 3 387.880267 1160.61897 0.16805 6.5184E-05 0.030656 1.1891E-05 0.19871 7.7075E-05 387.88020856498565 30.999 0.56485 28.882 28.573 29.138 -2.1167 45 15 4 0 0 0 0.87285 1 5647 5647 12.175 1.2758 1 5088200 25286 5002 16648 16654 25016 25016 0.04508799534778518 LDDVVAFRLN 10 Unmodified _LDDVVAFRLN_ 0 0 0 ENSG00000154252|ENST00000192314|GAL3ST2 ENSG00000154252|ENST00000192314|GAL3ST2 ENSG00000154252|ENST00000192314|GAL3ST2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 387.880267 1160.61897 -0.053755 -2.0851E-05 0.13851 5.3726E-05 0.084756 3.2875E-05 387.8802754270742 28.862 0.45462 28.862 28.635 29.09 0 -0.021584 7.1017E-05 NaN 12.175 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4999200 25287 5002 16648 16654 0.04508799534778518 LDDVVAFRLN 10 Unmodified _LDDVVAFRLN_ 0 0 0 ENSG00000154252|ENST00000192314|GAL3ST2 ENSG00000154252|ENST00000192314|GAL3ST2 ENSG00000154252|ENST00000192314|GAL3ST2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 387.880267 1160.61897 0.30726 0.00011918 -0.20609 -7.9936E-05 0.10118 3.9244E-05 387.880162413665 30.803 0.49445 28.855 28.606 29.1 -1.9479 -0.027938 -0.00032997 NaN 12.175 33 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4119600 25288 5002 16648 16654 0.04508799534778518 LDDVVAFRLN 10 Unmodified _LDDVVAFRLN_ 0 0 0 ENSG00000154252|ENST00000192314|GAL3ST2 ENSG00000154252|ENST00000192314|GAL3ST2 ENSG00000154252|ENST00000192314|GAL3ST2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 387.880267 1160.61897 -0.1207 -4.6818E-05 0.65762 0.00025508 0.53692 0.00020826 387.8802747090216 31.009 1.0176 28.934 28.571 29.588 -2.0743 0.050987 0.00067507 NaN 12.175 64 28 5 NaN NaN NaN NaN 0 NaN NaN 0 3664300 25289 5002 16648 16654 0.04508799534778518 LDDYEFNE 8 Unmodified _LDDYEFNE_ 0 0 0 REV__ENSG00000168329|ENST00000399220|CX3CR1 REV__ENSG00000168329|ENST00000399220|CX3CR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2625732421875 2 522.711462 1043.40837 0.19828 0.00010364 -1.8113 -0.0009468 -1.6131 -0.00084316 523.2101572740573 144.2 0.10019 144.2 144.14 144.24 0 4 2 2 0 0 0 1.0254 1 28799 28799 2.3027 0 1 836150 + 25290 18014 16649 16655 25017 25017 -0.11159702577947428 LDDYIDAEHL 10 Unmodified _LDDYIDAEHL_ 0 0 0 PSMF1|p.A161Cfs*26|1|0.07|ENSG00000125818|chr20:1135228-1135229|-/C|frameshift_variant;PSMF1|p.P160Lfs*39|1|0.15|ENSG00000125818|chr20:1135229-1135229|C/-|frameshift_variant;ENSG00000125818|ENST00000335877|PSMF1 PSMF1|p.A161Cfs*26|1|0.07|ENSG00000125818|chr20:1135228-1135229|-/C|frameshift_variant PSMF1|p.A161Cfs*26|1|0.07|ENSG00000125818|chr20:1135228-1135229|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.28076171875 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 48.902 1 45.903 45.403 46.403 -2.999 0 0 0 0.22588 1 8932 8932 6.7232 0 1 25291 3393 16650 16656 25018 25018 -0.047637936983846885 LDEAIRLVN 9 Unmodified _LDEAIRLVN_ 0 0 0 ENSG00000079101|ENST00000692774|CLUL1;CLUL1|p.T341R|1|0.41|ENSG00000079101|chr18:641354-641354|C/G|missense_variant ENSG00000079101|ENST00000692774|CLUL1 ENSG00000079101|ENST00000692774|CLUL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27001953125 2 521.798206 1041.58186 0.7816 0.00040784 -0.74902 -0.00039083 0.032584 1.7002E-05 521.7977542921733 106.14 0.61966 102.05 101.67 102.29 -4.0913 26 17 2 0 0 0 0.12935 1 20399 20399 2.6312 0 1 2087200 25292 1588 16651 16657 25019 25019 0.0627312798899311 LDECVSNPCQH 11 Unmodified _LDECVSNPCQH_ 0 0 0 NOTCH2|p.A1154V|1|0.2|ENSG00000134250|chr1:119937343-119937343|G/A|missense_variant NOTCH2|p.A1154V|1|0.2|ENSG00000134250|chr1:119937343-119937343|G/A|missense_variant NOTCH2|p.A1154V|1|0.2|ENSG00000134250|chr1:119937343-119937343|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.775390625 2 622.755355 1243.49616 NaN NaN NaN NaN NaN NaN NaN 164.68 1 159.9 159.4 160.4 -4.7898 0 0 0 0.23379 1 32928 32928 5.2969 1.7004 1 25293 12702 16652 16658 25020 25020 -0.11585148250469501 LDEDEMKLGGP 11 Unmodified _LDEDEMKLGGP_ 0 0 0 ENST00000544532.5_1_11:73360074-73362871:+|nuORF ENST00000544532.5_1_11:73360074-73362871:+|nuORF ENST00000544532.5_1_11:73360074-73362871:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2821655273438 2 602.281728 1202.5489 NaN NaN NaN NaN NaN NaN NaN 98.231 1 93.962 93.462 94.462 -4.2692 0 0 0 0.23324 1 18773 18773 5.7319 0.97584 1 25294 11110 16653 16659 25021 25021 -0.044268669160373975 LDEEEQMPS 9 Unmodified _LDEEEQMPS_ 0 0 0 REV__ENSG00000163930|ENST00000460680|BAP1 REV__ENSG00000163930|ENST00000460680|BAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21240234375 3 359.818345 1076.43321 0.1751 6.3005E-05 0.27122 9.759E-05 0.44632 0.0001606 359.8184324473568 102.08 0.34902 102.08 101.89 102.24 0 10 9 2 0 0 0 0.87708 1 20046 20046 0.77653 0 1 1069700 + 25295 17629 16654 16660 25022 25022 -0.10195390766875789 LDEEREKF 8 Unmodified _LDEEREKF_ 0 0 0 REV__ENST00000474757.1_1_X:55757854-55777647:+|nuORF REV__ENST00000474757.1_1_X:55757854-55777647:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2785034179688 2 533.264196 1064.51384 0.084145 4.4871E-05 0.18178 9.6935E-05 0.26592 0.00014181 533.264194077401 130.07 0.85907 125.43 124.97 125.83 -4.6359 57 22 3 0 0 0 0.71876 1 25541 25541 11.64 0.84079 1 7706800 + 25296 14456 16655 16661 25023 25023 -0.015837416616705013 LDEFSNRY 8 Unmodified _LDEFSNRY_ 0 0 0 REV__RABGAP1L|p.N659S|1|0.68|ENSG00000152061|chr1:174699601-174699601|A/G|missense_variant REV__RABGAP1L|p.N659S|1|0.68|ENSG00000152061|chr1:174699601-174699601|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.281005859375 2 522.243264 1042.47197 NaN NaN NaN NaN NaN NaN NaN 78.727 1 78.727 78.227 79.227 0 0 0 0 0.21486 1 15322 15322 9.3474 0.75416 1 + 25297 24542 16656 16662 25024 25024 -0.04756297350195382 LDEHNGPF 8 Unmodified _LDEHNGPF_ 0 0 0 REV__nc|ENSG00000089250|P29475-2|NOS1 REV__nc|ENSG00000089250|P29475-2|NOS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25909423828125 2 464.711599 927.408646 0.017345 8.0605E-06 0.12148 5.6451E-05 0.13882 6.4511E-05 464.7112972351107 54.221 0.62231 51.086 50.626 51.248 -3.1352 25 17 3 0 0 0 0.99494 1 9938 9938 13.508 13.508 1 4746400 + 25298 14528 16657 16663 25025 25025 -0.057962380674212 LDEHNGPF 8 Unmodified _LDEHNGPF_ 0 0 0 REV__nc|ENSG00000089250|P29475-2|NOS1 REV__nc|ENSG00000089250|P29475-2|NOS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.711599 927.408646 -0.30039 -0.0001396 1.647 0.00076537 1.3466 0.00062578 464.7120253651801 54.128 0.31271 51.244 51.082 51.394 -2.8837 0.099268 0.0010997 NaN 13.508 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 5397700 + 25299 14528 16657 16663 -0.057962380674212 LDEKNIIII 9 Unmodified _LDEKNIIII_ 0 0 0 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5524597167969 3 357.55338 1069.63831 NaN NaN NaN NaN NaN NaN NaN 59.012 1 55.76 55.26 56.26 -3.2517 0 0 0 0.23508 1 10973 10973 4.897 0.70751 1 25300 26224 16658 16664 25026 25026 0.10627755825680651 LDEKVDKL 8 Unmodified _LDEKVDKL_ 0 0 0 ENSG00000165509|ENST00000298296|MAGEC3 ENSG00000165509|ENST00000298296|MAGEC3 ENSG00000165509|ENST00000298296|MAGEC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2545471191406 2 480.274032 958.533512 0.17573 8.4398E-05 -0.23993 -0.00011523 -0.064199 -3.0833E-05 480.2738783899971 63.155 0.68408 59.739 59.361 60.045 -3.4158 41 18 3 0 0 0 0.23568 1 11764 11764 41.956 0 1 5066300 25301 5637 16659 16665 25027 25027 0.05258634349092972 LDELIHLRD 9 Unmodified _LDELIHLRD_ 0 0 0 REV__ENST00000464094.2_1_2:74659592-74666815:-|nuORF REV__ENST00000464094.2_1_2:74659592-74666815:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2081604003906 3 375.208384 1122.60332 NaN NaN NaN NaN NaN NaN NaN 42.503 1 42.503 42.003 43.003 0 0 0 0 0.19636 1 7951 7951 2.4985 0 1 + 25302 21932 16660 16666 25028 25028 0.04692513017721467 LDEMRGGAA 9 Unmodified _LDEMRGGAA_ 0 0 0 REV__ENST00000505095.1_1_4:166024222-166033925:-|nuORF REV__ENST00000505095.1_1_4:166024222-166033925:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2314758300781 2 460.218734 918.422915 NaN NaN NaN NaN NaN NaN NaN 41.174 1 38.539 38.039 39.039 -2.6348 0 0 0 0.22251 1 7685 7685 16.942 3.0362 1 + 25303 22474 16661 16667 25029 25029 -0.03955908910779726 LDEPVMKGR 9 Unmodified _LDEPVMKGR_ 0 0 0 REV__nc|ENSG00000139631|Q9Y600-2|CSAD REV__nc|ENSG00000139631|Q9Y600-2|CSAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2796630859375 2 522.778959 1043.54336 -0.36154 -0.00018901 0.40731 0.00021294 0.045775 2.393E-05 522.7791382900263 113.26 0.71838 108.8 108.4 109.11 -4.4538 31 19 2 0 0 0 0.79204 1 22341 22341 11.64 0 1 1914900 + 25304 16529 16662 16668 25030 25030 0.023334990828288937 LDERRLYY 8 Unmodified _LDERRLYY_ 0 0 0 nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS nc|ENSG00000185359|O14964-2|HGS nc|ENSG00000185359|O14964-2|HGS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1173095703125 3 376.532979 1126.57711 0.046013 1.7326E-05 -0.24918 -9.3824E-05 -0.20317 -7.6499E-05 376.53283538923097 51.713 1.0191 48.668 48.084 49.104 -3.0453 71 28 3 0 0 0 1.0248 1 9588 9588 3.5965 2.267 1 3712800 25305 6985 16663 16669 25031 25031 0.018882438462242135 LDERRLYY 8 Unmodified _LDERRLYY_ 0 0 0 nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS nc|ENSG00000185359|O14964-2|HGS nc|ENSG00000185359|O14964-2|HGS MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 376.532979 1126.57711 0.1288 4.8498E-05 -0.12213 -4.5987E-05 0.0066682 2.5108E-06 376.53289508191426 48.675 0.91598 48.675 48.139 49.055 0 0.043368 -0.00026075 NaN 3.5965 59 25 3 NaN NaN NaN NaN 0 NaN NaN 0 4773000 25306 6985 16663 16669 0.018882438462242135 LDERRLYY 8 Unmodified _LDERRLYY_ 0 0 0 nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS nc|ENSG00000185359|O14964-2|HGS nc|ENSG00000185359|O14964-2|HGS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 376.532979 1126.57711 -0.39669 -0.00014937 0.19406 7.3072E-05 -0.20263 -7.6296E-05 376.5329952883407 51.465 0.93382 48.582 48.035 48.969 -2.8824 -0.048857 9.6429E-05 NaN 3.5965 71 26 3 NaN NaN NaN NaN 0 NaN NaN 0 4023800 25307 6985 16663 16669 0.018882438462242135 LDERRLYY 8 Unmodified _LDERRLYY_ 0 0 0 nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS nc|ENSG00000185359|O14964-2|HGS nc|ENSG00000185359|O14964-2|HGS MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 376.532979 1126.57711 -0.74445 -0.00028031 0.61055 0.00022989 -0.13389 -5.0416E-05 376.5331284930961 51.652 1.0107 48.6 48.027 49.038 -3.0517 -0.03096 0.0005669 NaN 3.5965 66 28 3 NaN NaN NaN NaN 0 NaN NaN 0 3106100 25308 6985 16663 16669 0.018882438462242135 LDEYEYDQY 9 Unmodified _LDEYEYDQY_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000007350 REV__CON__ENSEMBL:ENSBTAP00000007350 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16998291015625 4 310.127842 1236.48226 -0.70615 -0.000219 -3.3828 -0.0010491 -4.0889 -0.0012681 310.3769857250564 97.129 0.44071 93.21 92.887 93.328 -3.9194 14 12 2 0 0 0 0.88466 1 18607 18607 0 0 1 650310 + + 25309 13504 16664 16670 25032 25032 -0.12651779206294123 LDEYRKREYEY 11 Unmodified _LDEYRKREYEY_ 0 0 0 REV__ENSG00000135976|ENST00000420699|ANKRD36 REV__ENSG00000135976|ENST00000420699|ANKRD36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2799072265625 3 521.91945 1562.73652 0.20844 0.00010879 -3.1016 -0.0016188 -2.8932 -0.00151 521.9189231679813 143.2 0.10335 143.2 143.14 143.24 0 4 2 2 0 0 0 0.82392 1 28573 28573 0.45452 0.087843 1 3270200 + 25310 16305 16665 16671 25033 25033 -0.022337123870556752 LDFCGRNQI 9 Unmodified _LDFCGRNQI_ 0 0 0 ENSG00000197591|ENST00000355784|OR11L1 ENSG00000197591|ENST00000355784|OR11L1 ENSG00000197591|ENST00000355784|OR11L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2628173828125 2 533.260933 1064.50731 NaN NaN NaN NaN NaN NaN NaN 158.36 1 158.36 157.86 158.86 0 0 0 0 0.22251 1 31796 31796 16.942 4.4107 1 25311 7382 16666 16672 25034 25034 -0.022359580940246815 LDFEDLPLY 9 Unmodified _LDFEDLPLY_ 0 0 0 nc|ENSG00000102886|Q7L5L3-1|GDPD3;GDPD3|p.L250Vfs*32|1|0.16|ENSG00000102886|chr16:30108392-30108393|-/TAAC|frameshift_variant;ENSG00000102886|ENST00000406256|GDPD3 nc|ENSG00000102886|Q7L5L3-1|GDPD3 nc|ENSG00000102886|Q7L5L3-1|GDPD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2116394042969 3 375.521857 1123.54374 -0.17225 -6.4683E-05 0.41183 0.00015465 0.23958 8.9967E-05 375.52201243596033 63.199 0.67988 60.201 59.808 60.488 -2.9975 31 19 2 0 0 0 0.8606 1 12226 12226 7.1017 3.5052 1 2111800 25312 2149 16667 16673 25035 25035 -0.01308802716334867 LDFEEERR 8 Unmodified _LDFEEERR_ 0 0 0 REV__nc|ENSG00000080503|P51531-2|SMARCA2 REV__nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7681274414062 2 547.26727 1092.51999 0.13261 7.2573E-05 0.65281 0.00035726 0.78542 0.00042983 547.2677413858563 44.022 1.0089 41.231 40.736 41.745 -2.79 65 28 4 0 0 0 0.56049 1 8205 8205 24.674 0.65332 1 5114600 + 25313 14409 16668 16674 25036 25036 -0.022572234301378558 LDFERTLGL 9 Unmodified _LDFERTLGL_ 0 0 0 nc|ENSG00000139318|Q16828-2|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000139318|ENST00000279488|DUSP6;ENSG00000164086|ENST00000495880|DUSP7 nc|ENSG00000139318|Q16828-2|DUSP6 nc|ENSG00000139318|Q16828-2|DUSP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.281982421875 2 532.292756 1062.57096 -0.073874 -3.9323E-05 -2.9923 -0.0015928 -3.0662 -0.0016321 532.7908313149013 103.78 0.41065 99.562 99.278 99.689 -4.2183 19 11 3 0 0 0 0.49624 1 20376 20376 0.12781 0 1 782890 25314 4237 16669 16675 25037 25037 0.04217725614716983 LDFIRQFVL 9 Unmodified _LDFIRQFVL_ 0 0 0 REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33740234375 2 575.834591 1149.65463 0.41167 0.00023706 4.0899 0.0023551 4.5016 0.0025922 575.8369814551949 68.051 0.14006 64.515 64.45 64.59 -3.5362 5 3 2 0 0 0 0.84208 1 12793 12793 7.2892 0 1 914470 + 25315 25559 16670 16676 25038 25038 0.0857888178243229 LDFLLFTIAV 10 Unmodified _LDFLLFTIAV_ 0 0 0 REV__ENSG00000198840|ENST00000361227|MT-ND3 REV__ENSG00000198840|ENST00000361227|MT-ND3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3367919921875 2 576.339175 1150.6638 NaN NaN NaN NaN NaN NaN NaN 155.21 1 155.21 154.71 155.71 0 0 0 0 0.22588 1 31114 31114 9.3831 1.7742 1 + 25316 19461 16671 16677 25039 25039 0.09449230348081983 LDFRRQQMQDF 11 Unmodified _LDFRRQQMQDF_ 0 0 0 SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant;nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;SRRT|p.A216Pfs*6|2|0.26|ENSG00000087087|chr7:100884123-100884123|G/-|frameshift_variant SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3592529296875 2 742.359167 1482.70378 NaN NaN NaN NaN NaN NaN NaN 175.02 1 175.02 174.52 175.52 0 0 0 0 0.23698 1 36258 36258 1.3295 0 1 25317 1704 16672 16678 25040 25040 -0.01826197990953915 LDFSFPDCHV 10 Unmodified _LDFSFPDCHV_ 0 0 0 ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.263671875 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 147.05 1 141.93 141.43 142.43 -5.1108 0 0 0 0.22588 1 28448 28448 6.7232 0 1 25318 6157 16673 16679 25041 25041 -0.0754679753374603 LDFSHVHDAY 10 Unmodified _LDFSHVHDAY_ 0 0 0 ENST00000497302.1_1_1:12042112-12052340:+|nuORF ENST00000497302.1_1_1:12042112-12052340:+|nuORF ENST00000497302.1_1_1:12042112-12052340:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2940673828125 2 602.275095 1202.53564 NaN NaN NaN NaN NaN NaN NaN 131.81 1 127.17 126.67 127.67 -4.6399 0 0 0 0.22588 1 25975 25975 6.7232 0 1 25319 10587 16674 16680 25042 25042 -0.057529369130861596 LDFSIVALHH 10 Unmodified _LDFSIVALHH_ 0 0 0 ENST00000413794.6_1_12:22853013-23014065:+|nuORF ENST00000413794.6_1_12:22853013-23014065:+|nuORF ENST00000413794.6_1_12:22853013-23014065:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3258056640625 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 162.55 1 157.76 157.26 158.26 -4.7898 0 0 0 0.22583 1 32348 32348 13.906 3.8321 1 25320 9595 16675 16681 25043 25043 0.044211207429498245 LDFTVRAIGS 10 Unmodified _LDFTVRAIGS_ 0 0 0 REV__ENSG00000176194|ENST00000320477|CIDEA REV__ENSG00000176194|ENST00000320477|CIDEA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 120.11 1 115.59 115.09 116.09 -4.5221 0 0 0 0.22588 1 23682 23682 3.3196 0.58445 1 + 25321 18501 16676 16682 25044 25044 0.046171279889904326 LDFVRKKLKI 10 Unmodified _LDFVRKKLKI_ 0 0 0 REV__NCKAP5L|p.P949Rfs*23|1|0.14|ENSG00000167566|chr12:49795014-49795014|G/-|frameshift_variant REV__NCKAP5L|p.P949Rfs*23|1|0.14|ENSG00000167566|chr12:49795014-49795014|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7728881835938 2 630.41354 1258.81253 0.39214 0.00024721 0.057923 3.6515E-05 0.45006 0.00028372 630.4148917872182 154.98 0.17831 149.69 149.57 149.75 -5.2854 6 4 2 0 0 0 0.91149 1 30046 30046 1.4819 0 1 713590 + 25322 17940 16677 16683 25045 25045 0.19347381041666267 LDFVTVHV 8 Unmodified _LDFVTVHV_ 0 0 0 REV__ZAN|p.C2312Lfs*43|1|0.24|ENSG00000146839|chr7:100786096-100786097|-/TG|frameshift_variant REV__ZAN|p.C2312Lfs*43|1|0.24|ENSG00000146839|chr7:100786096-100786097|-/TG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2588806152344 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 128.58 1 123.84 123.34 124.34 -4.7408 0 0 0 0.21452 1 24743 24743 13.508 4.9146 1 + 25323 16904 16678 16684 25046 25046 0.03470686385821864 LDFYYTDEN 9 Unmodified _LDFYYTDEN_ 0 0 0 REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1 REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.255859375 2 590.245669 1178.47678 NaN NaN NaN NaN NaN NaN NaN 161.84 1 156.69 156.19 157.19 -5.1438 0 0 0 0.23508 1 31430 31430 7.2892 1.0834 1 + 25324 24959 16679 16685 25047 25047 -0.1053145799808135 LDFYYTDEN 9 Unmodified _LDFYYTDEN_ 0 0 0 REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1 REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2518920898438 2 590.245669 1178.47678 NaN NaN NaN NaN NaN NaN NaN 162.93 1 157.78 157.28 158.28 -5.1438 0 0 0 0.13613 1 31676 31676 32.305 14.159 1 + 25325 24959 16679 16685 25048 25048 -0.1053145799808135 LDFYYTDEN 9 Unmodified _LDFYYTDEN_ 0 0 0 REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1 REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.248291015625 2 590.245669 1178.47678 NaN NaN NaN NaN NaN NaN NaN 163.38 1 158.34 157.84 158.84 -5.0446 0 0 0 0.21469 1 31791 31791 19.257 3.1079 1 + 25326 24959 16679 16685 25049 25049 -0.1053145799808135 LDFYYTDEN 9 Unmodified _LDFYYTDEN_ 0 0 0 REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1 REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.262451171875 2 590.245669 1178.47678 NaN NaN NaN NaN NaN NaN NaN 163.06 1 157.87 157.37 158.37 -5.1878 0 0 0 0.21469 1 31705 31705 19.257 1.1106 1 + 25327 24959 16679 16685 25050 25050 -0.1053145799808135 LDGAFVYFY 9 Unmodified _LDGAFVYFY_ 0 0 0 tr|U7T255|U7T255_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00552PE=4SV=1 tr|U7T255|U7T255_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00552PE=4SV=1 tr|U7T255|U7T255_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00552PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7904052734375 2 547.7633 1093.51205 0.33491 0.00018345 -3.813 -0.0020886 -3.4781 -0.0019052 548.2638744797762 154.01 0.21263 154.01 153.87 154.08 0 8 5 3 0 0 0 0.66537 1 30837 30837 8.5933 0.68312 1 1450200 25328 26342 16680 16686 25051 25051 -0.030967506796287125 LDGFKGLVL 9 Unmodified _LDGFKGLVL_ 0 0 0 REV__nc|ENSG00000197381|P78563-6|ADARB1 REV__nc|ENSG00000197381|P78563-6|ADARB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2375793457031 2 481.289485 960.564418 NaN NaN NaN NaN NaN NaN NaN 122.71 1 118.16 117.66 118.66 -4.5476 0 0 0 0.19721 1 24192 24192 24.021 0.87215 1 + 25329 19332 16681 16687 25052 25052 0.08255832453994572 LDGGSKIKNY 10 Unmodified _LDGGSKIKNY_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7930908203125 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 164.82 1 159.76 159.26 160.26 -5.0648 0 0 0 0.22576 1 32170 32170 14.838 2.3067 1 25330 5053 16682 16688 25053 25053 0.03372824126381602 LDGHDTEPG 9 Unmodified _LDGHDTEPG_ 0 0 0 ENSG00000205669|ENST00000645972|ACOT6 ENSG00000205669|ENST00000645972|ACOT6 ENSG00000205669|ENST00000645972|ACOT6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1383361816406 3 314.138406 939.393389 NaN NaN NaN NaN NaN NaN NaN 57.268 1 54.078 53.578 54.578 -3.1895 0 0 0 0.23508 1 10631 10631 1.1933 0 1 25331 7654 16683 16689 25054 25054 -0.07873149655279121 LDGKVYTIRS 10 Unmodified _LDGKVYTIRS_ 0 0 0 REV__ENST00000465893.1_1_6:41037763-41039373:-|nuORF REV__ENST00000465893.1_1_6:41037763-41039373:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3228149414062 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 55.284 1 52.147 51.647 52.647 -3.1377 0 0 0 0.22588 1 10259 10259 8.7454 0.83525 1 + 25332 15788 16684 16690 25055 25055 0.06533086051786086 LDGQYYGF 8 Unmodified _LDGQYYGF_ 0 0 0 ENST00000521922.5_1_8:103297501-103297537:-|nuORF ENST00000521922.5_1_8:103297501-103297537:-|nuORF ENST00000521922.5_1_8:103297501-103297537:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2383728027344 2 481.71635 961.418148 0.049567 2.3877E-05 -1.0564 -0.00050887 -1.0068 -0.00048499 481.71578135730283 129.97 0.67744 125.34 125.04 125.72 -4.6359 35 18 2 0 0 0 0.96284 1 25628 25628 4.756 0 1 2808300 25333 10856 16685 16691 25056 25056 -0.06410469781906158 LDGSGSGY 8 Unmodified _LDGSGSGY_ 0 0 0 ENST00000460083.1_1_3:184080267-184080848:+|nuORF;ENST00000456318.5_2_3:184079522-184080848:+|nuORF ENST00000460083.1_1_3:184080267-184080848:+|nuORF ENST00000460083.1_1_3:184080267-184080848:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 755.5326538085938 1 755.320625 754.313348 0.42835 0.00032354 -4.4075 -0.0033291 -3.9792 -0.0030056 755.3191293656203 166.51 0.13782 161.53 161.43 161.56 -4.9811 7 3 3 0 0 0 0.77935 1 32618 32618 5.2307 0 1 15375000 25334 10025 16686 16692 25057 25057 -0.07363591258479119 LDGVVRVIVSF 11 Unmodified _LDGVVRVIVSF_ 0 0 0 REV__nc|ENSG00000151553|Q5W0V3-2|FHIP2A REV__nc|ENSG00000151553|Q5W0V3-2|FHIP2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2722778320312 2 602.358431 1202.70231 NaN NaN NaN NaN NaN NaN NaN 116.07 1 116.07 115.57 116.57 0 0 0 0 0.23018 1 22852 22852 8.1555 0.8663 1 + 25335 17073 16687 16693 25058 25058 0.10906535982599053 LDGWLQRGV 9 Unmodified _LDGWLQRGV_ 0 0 0 SLC25A28|p.G167Afs*22|1|0.72|ENSG00000155287|chr10:99613716-99613716|C/-|frameshift_variant;SLC25A28|p.Q256Rfs*19|1|0.46|ENSG00000155287|chr10:99611178-99611178|G/-|frameshift_variant;ENSG00000155287|ENST00000370495|SLC25A28 SLC25A28|p.G167Afs*22|1|0.72|ENSG00000155287|chr10:99613716-99613716|C/-|frameshift_variant SLC25A28|p.G167Afs*22|1|0.72|ENSG00000155287|chr10:99613716-99613716|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2581787109375 2 522.285266 1042.55598 -0.28143 -0.00014699 0.7777 0.00040618 0.49627 0.00025919 522.2855189367734 86.952 0.52621 83.225 82.765 83.291 -3.727 22 14 2 0 0 0 0.58699 1 16995 16995 13.906 4.5229 1 2121700 25336 5041 16688 16694 25059 25059 0.03640278537386621 LDHDWMIIKRD 11 Unmodified _LDHDWMIIKRD_ 0 0 0 REV__EML4|p.L535M|1|0.25|ENSG00000143924|chr2:42301354-42301354|C/A|missense_variant REV__EML4|p.L535M|1|0.25|ENSG00000143924|chr2:42301354-42301354|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2453918457031 3 481.246733 1440.71837 NaN NaN NaN NaN NaN NaN NaN 123.53 1 123.53 123.03 124.03 0 0 0 0 0.22632 1 24352 24352 0.026206 0 1 + 25337 13810 16689 16695 25060 25060 0.015638741571819992 LDHDWMIIKRD 11 Unmodified _LDHDWMIIKRD_ 0 0 0 REV__EML4|p.L535M|1|0.25|ENSG00000143924|chr2:42301354-42301354|C/A|missense_variant REV__EML4|p.L535M|1|0.25|ENSG00000143924|chr2:42301354-42301354|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24627685546875 3 481.246733 1440.71837 NaN NaN NaN NaN NaN NaN NaN 140.69 1 136.04 135.54 136.54 -4.6493 0 0 0 0.22632 1 27777 27777 0.026206 0 1 + 25338 13810 16689 16695 25061 25061 0.015638741571819992 LDHGSLCGN 9 Unmodified _LDHGSLCGN_ 0 0 0 REV__ENST00000466781.5_1_22:26849201-26862270:-|nuORF;REV__ENST00000496385.5_1_22:26849136-26861668:-|nuORF REV__ENST00000496385.5_1_22:26849136-26861668:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2381286621094 2 458.203084 914.391615 NaN NaN NaN NaN NaN NaN NaN 124.03 1 119.44 118.94 119.94 -4.5926 0 0 0 0.22251 1 23870 23870 16.942 6.8684 1 + 25339 14666;22389 16690 16696 25062 25062 -0.06900481944887815 LDHKNIIQ 8 Unmodified _LDHKNIIQ_ 0 0 0 TSSK3|p.G191Vfs*42|1|0.37|ENSG00000162526|chr1:32364014-32364014|A/-|frameshift_variant;ENSG00000162526|ENST00000373534|TSSK3 TSSK3|p.G191Vfs*42|1|0.37|ENSG00000162526|chr1:32364014-32364014|A/-|frameshift_variant TSSK3|p.G191Vfs*42|1|0.37|ENSG00000162526|chr1:32364014-32364014|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.253173828125 2 490.779816 979.545079 0.099939 4.9048E-05 0.2226 0.00010925 0.32254 0.0001583 490.77986658325 106.49 0.7559 102.11 101.72 102.47 -4.3764 44 21 3 0 0 0 0.57473 1 20387 20387 32.305 0 1 4726500 25340 5341 16691 16697 25063 25063 0.054488761630864246 LDHLKLAL 8 Unmodified _LDHLKLAL_ 0 0 0 REV__ENST00000527092.5_1_11:66241041-66241260:-|nuORF REV__ENST00000527092.5_1_11:66241041-66241260:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.1954040527344 3 308.195527 921.564752 NaN NaN NaN NaN NaN NaN NaN 65.77 1 62.486 61.986 62.986 -3.2832 0 0 0 0.2386 1 12369 12369 0.0082765 0 1 + 25341 22697 16692 16698 25064 25064 0.1008325217383117 LDHLNRLRS 9 Unmodified _LDHLNRLRS_ 0 0 0 REV__VASN|p.R542Gfs*86|1|0.42|ENSG00000168140|chr16:4382495-4382495|C/-|frameshift_variant REV__VASN|p.R542Gfs*86|1|0.42|ENSG00000168140|chr16:4382495-4382495|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2170104980469 3 375.215873 1122.62579 NaN NaN NaN NaN NaN NaN NaN 160.96 1 160.96 160.46 161.46 0 0 0 0 0.23508 1 32321 32321 3.8763 1.7903 1 + 25342 18000 16693 16699 25065 25065 0.06938157205991047 LDHQQFDY 8 Unmodified _LDHQQFDY_ 0 0 0 SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.E1445Sfs*15|1|0.09|ENSG00000133812|chr11:9808111-9808111|T/-|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000526353.1_1_11:9983413-9985421:-|nuORF SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2741088867188 2 533.235439 1064.45632 NaN NaN NaN NaN NaN NaN NaN 65.207 1 61.923 61.423 62.423 -3.2832 0 0 0 0.20896 1 12253 12253 18.135 2.3668 1 25343 3817 16694 16700 25066 25066 -0.07332583867219 LDHTVDAT 8 Unmodified _LDHTVDAT_ 0 0 0 REV__SLC2A1|p.R232H|1|0.33|ENSG00000117394|chr1:42929765-42929765|C/T|missense_variant REV__SLC2A1|p.R232H|1|0.33|ENSG00000117394|chr1:42929765-42929765|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2344970703125 2 436.211432 870.408311 0.15983 6.9718E-05 0.070974 3.096E-05 0.2308 0.00010068 436.2114014843742 33.921 1.5963 31.775 31.427 33.023 -2.1468 99 45 3 0 0 0 0.74398 1 6008 6008 7.9102 1.187 1 2627600 + 25344 15517 16695 16701 25067 25067 -0.03207657787288554 LDHVGDQLF 9 Unmodified _LDHVGDQLF_ 0 0 0 ENST00000552189.5_1_12:48438897-48439101:-|nuORF ENST00000552189.5_1_12:48438897-48439101:-|nuORF ENST00000552189.5_1_12:48438897-48439101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2704467773438 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 134.76 1 129.88 129.38 130.38 -4.8726 0 0 0 0.19656 1 25883 25883 0.029283 0 1 25345 11191 16696 16702 25068 25068 -0.011194204534831442 LDHWLWNDQWW 11 Unmodified _LDHWLWNDQWW_ 0 0 0 REV__ENST00000431490.1_1_3:45201441-45201549:-|nuORF REV__ENST00000431490.1_1_3:45201441-45201549:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 799.6567993164062 2 799.8624 1597.71025 NaN NaN NaN NaN NaN NaN NaN 172.37 1 167.58 167.08 168.08 -4.7898 0 0 0 0.23698 1 35113 35113 1.3295 0.13619 1 + 25346 21622 16697 16703 25069 25069 -0.06469936767916806 LDICEFIDNY 10 Unmodified _LDICEFIDNY_ 0 0 0 ENSG00000127585|ENST00000397621|FBXL16 ENSG00000127585|ENST00000397621|FBXL16 ENSG00000127585|ENST00000397621|FBXL16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7786865234375 2 622.778822 1243.54309 NaN NaN NaN NaN NaN NaN NaN 97.424 1 93.189 92.689 93.689 -4.2348 0 0 0 0.22588 1 18610 18610 6.7232 0.51738 1 25347 3485 16698 16704 25070 25070 -0.06893965427684634 LDIGENRF 8 Unmodified _LDIGENRF_ 0 0 0 REV__ENSG00000065427|ENST00000302445|KARS1 REV__ENSG00000065427|ENST00000302445|KARS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7716979980469 2 482.248349 962.482145 0.25618 0.00012354 -0.43476 -0.00020966 -0.17857 -8.6117E-05 482.24814749837356 73.783 0.73017 70.107 69.686 70.416 -3.6764 34 20 3 0 0 0 0.93477 1 13917 13917 12.532 0 1 3204500 + 25348 14187 16699 16705 25071 25071 -0.0005968962494762309 LDIGESHTMF 10 Unmodified _LDIGESHTMF_ 0 0 0 REV__ENSG00000108599|ENST00000225737|AKAP10 REV__ENSG00000108599|ENST00000225737|AKAP10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3150634765625 2 575.265881 1148.51721 -0.49387 -0.0002841 0.47605 0.00027386 -0.017815 -1.0249E-05 575.266226525005 107.84 0.72985 103.52 103.14 103.87 -4.32 54 20 4 0 0 0 0.59928 1 21288 21288 19.257 4.4187 1 13934000 + 25349 15133 16700 16706 25072 25072 -0.051108148792991415 LDISESVLIY 10 Unmodified _LDISESVLIY_ 0 0 0 ENSG00000174576|ENST00000311034|NPAS4 ENSG00000174576|ENST00000311034|NPAS4 ENSG00000174576|ENST00000311034|NPAS4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3286743164062 2 576.313354 1150.61216 NaN NaN NaN NaN NaN NaN NaN 157.42 1 157.42 156.92 157.92 0 0 0 0 0.22588 1 31595 31595 6.7232 0 1 25350 6358 16701 16707 25073 25073 0.04287441863539243 LDKCMDCASCR 11 Unmodified _LDKCMDCASCR_ 0 0 0 ENSG00000006327|ENST00000326577|TNFRSF12A ENSG00000006327|ENST00000326577|TNFRSF12A ENSG00000006327|ENST00000326577|TNFRSF12A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7666015625 2 622.748161 1243.48177 NaN NaN NaN NaN NaN NaN NaN 165.15 1 160.2 159.7 160.7 -4.9484 0 0 0 0.23429 1 32252 32252 4.897 1.3005 1 25351 1007 16702 16708 25074 25074 -0.13023259994633918 LDKDRVVI 8 Unmodified _LDKDRVVI_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73577880859375 2 479.290017 956.565481 0.041538 1.9909E-05 -0.071514 -3.4276E-05 -0.029976 -1.4367E-05 479.28990660416355 129.37 1.0424 124.74 124.19 125.23 -4.6292 68 29 3 0 0 0 0.41341 1 25503 25503 42.095 0 1 12755000 25352 5053;26536 16703 16709 25075 25075 0.0854604682289164 LDKFGVSY 8 Unmodified _LDKFGVSY_ 0 0 0 REV__ENSG00000077420|ENST00000376236|APBB1IP REV__ENSG00000077420|ENST00000376236|APBB1IP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651611328125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 93.863 1 93.863 93.363 94.363 0 0 0 0 0.23837 1 18374 18374 0.12286 0 1 + 25353 14365 16704 16710 25076 25076 0.003546936318684857 LDKFGVSY 8 Unmodified _LDKFGVSY_ 0 0 0 REV__ENSG00000077420|ENST00000376236|APBB1IP REV__ENSG00000077420|ENST00000376236|APBB1IP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 111.59 1 107.09 106.59 107.59 -4.4915 0 0 0 0.23626 1 21415 21415 0.12286 0 1 + 25354 14365 16704 16710 25077 25077 0.003546936318684857 LDKGHECHTY 10 Unmodified _LDKGHECHTY_ 0 0 0 REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2740478515625 2 601.76658 1201.51861 0.55632 0.00033477 -2.5319 -0.0015236 -1.9756 -0.0011888 602.2641354230848 127.41 0.10506 122.61 122.56 122.66 -4.7958 4 2 2 0 0 0 0.74842 1 24446 24446 6.2058 1.4498 1 1078200 + 25355 21682 16705 16711 25078 25078 -0.07409180790546088 LDKGKLYR 8 Unmodified _LDKGKLYR_ 0 0 0 REV__AGRN|p.P627Rfs*105|2|0.32|ENSG00000188157|chr1:1043899-1043899|C/-|frameshift_variant REV__AGRN|p.P627Rfs*105|2|0.32|ENSG00000188157|chr1:1043899-1043899|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.0313720703125 3 331.534431 991.581465 0.25912 8.5907E-05 -0.22969 -7.6149E-05 0.029435 9.7588E-06 331.5343318523934 32.675 1.4005 30.528 29.713 31.113 -2.1468 47 39 2 0 0 0 1.0265 1 5654 5654 0.40072 0 1 510410 + 25356 12984 16706 16712 25079 25079 0.0853375305979398 LDKHGYNGY 9 Unmodified _LDKHGYNGY_ 0 0 0 REV__ENST00000594254.1_1_19:21565732-21566473:+|nuORF REV__ENST00000594254.1_1_19:21565732-21566473:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2680053710938 2 533.751256 1065.48796 0.46131 0.00024622 0.84161 0.00044921 1.3029 0.00069543 534.254531653222 83.149 0.17652 79.275 79.186 79.362 -3.8736 5 4 2 0 0 0 0.56979 1 15785 15785 1.5624 0 1 818590 + 25357 18301 16707 16713 25080 25080 -0.04216591113276991 LDKKDQSK 8 Unmodified _LDKKDQSK_ 0 0 0 REV__tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1 REV__tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7796936035156 2 481.269281 960.52401 0.060334 2.9037E-05 0.23754 0.00011432 0.29787 0.00014336 481.26935043557546 26.369 0.74948 26.369 26.09 26.839 0 56 21 4 0 0 0 0.64348 1 4669 4669 24.021 3.5669 1 22272000 + 25358 25356 16708 16714 25081 25081 0.04216866063575253 LDKKSEKRKE 10 Unmodified _LDKKSEKRKE_ 0 0 0 ANKRD11|p.N916K|1|0.29|ENSG00000167522|chr16:89283794-89283794|G/T|missense_variant ANKRD11|p.N916K|1|0.29|ENSG00000167522|chr16:89283794-89283794|G/T|missense_variant ANKRD11|p.N916K|1|0.29|ENSG00000167522|chr16:89283794-89283794|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7493286132812 2 630.867151 1259.71975 NaN NaN NaN NaN NaN NaN NaN 121.93 1 121.93 121.43 122.43 0 0 0 0 0.22588 1 24037 24037 6.2058 0.47393 1 25359 158 16709 16715 25082 25082 0.10027831517618324 LDKKVEKV 8 Unmodified _LDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2329406738281 2 479.800217 957.585882 0.017697 8.4911E-06 0.029218 1.4019E-05 0.046915 2.251E-05 479.8001857444621 25.453 0.79953 25.453 25.29 26.09 0 66 22 4 0 0 0 0.62703 1 4455 4455 20.415 3.3016 1 56701000 25360 1874 16710 16716 25083 25083 0.10539217482710228 LDKKVEKV 8 Unmodified _LDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2462158203125 2 479.800217 957.585882 0.98453 0.00047238 -0.93787 -0.00044999 0.046658 2.2386E-05 479.7996830858634 27.133 0.98883 25.351 25.165 26.153 -1.7821 80 27 4 0 0 0 0.37569 2 4808 4808;4850 33.445 8.4539 1 59446000 25361 1874 16710 16716 25084;25085 25084 0.10539217482710228 LDKKVEKV 8 Unmodified _LDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23345947265625 2 479.800217 957.585882 0.20224 9.7033E-05 -0.14288 -6.8555E-05 0.059355 2.8478E-05 479.80010710358766 27.061 0.94258 25.426 25.178 26.121 -1.6347 90 26 4 0 0 0 0.52056 1 4542 4542 27.223 5.6331 1 59170000 25362 1874 16710 16716 25086 25086 0.10539217482710228 LDKKVEKV 8 Unmodified _LDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2549133300781 2 479.800217 957.585882 0.12885 6.1822E-05 -0.10769 -5.1671E-05 0.021157 1.0151E-05 479.80008866786557 27.224 1.0511 25.302 25.122 26.173 -1.9222 86 29 4 0 0 0 0.52056 1 4593 4593 27.223 0 1 53466000 25363 1874 16710 16716 25087 25087 0.10539217482710228 LDKLVPDE 8 Unmodified _LDKLVPDE_ 0 0 0 REV__ENSG00000082516|ENST00000285873|GEMIN5 REV__ENSG00000082516|ENST00000285873|GEMIN5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.17034912109375 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 98.729 1 94.772 94.272 95.272 -3.9564 0 0 0 0.21486 1 18950 18950 1.4819 0.28856 1 + 25364 14440 16711 16717 25088 25088 0.024666589407047468 LDKSRLERY 9 Unmodified _LDKSRLERY_ 0 0 0 SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.G1860Efs*9|1|0.33|ENSG00000065526|chr1:15931816-15931816|G/-|frameshift_variant;SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant;ENSG00000065526|ENST00000375759|SPEN;SPEN|p.I1052Sfs*40|1|0.35|ENSG00000065526|chr1:15929388-15929388|A/-|frameshift_variant;SPEN|p.I1159Lfs*28|1|0.25|ENSG00000065526|chr1:15929710-15929710|A/-|frameshift_variant;SPEN|p.N788Kfs*2|1|0.3|ENSG00000065526|chr1:15928597-15928598|-/A|frameshift_variant SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2645263671875 2 590.327662 1178.64077 NaN NaN NaN NaN NaN NaN NaN 77.438 1 73.975 73.475 74.475 -3.4633 0 0 0 0.23508 1 15118 15118 10.824 2.9138 1 25365 25781 16712 16718 25089 25089 0.058596042833414685 LDKVLKNY 8 Unmodified _LDKVLKNY_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 496.8154602050781 2 496.792392 991.570232 NaN NaN NaN NaN NaN NaN NaN 152.38 1 147.21 146.71 147.71 -5.1759 0 0 0 0.22684 1 29535 29535 0.25148 0 1 25366 4896 16713 16719 25090 25090 0.0741093096565919 LDKWEEKV 8 Unmodified _LDKWEEKV_ 0 0 0 ENST00000369285.7_2_10:115932986-115933786:-|nuORF ENST00000369285.7_2_10:115932986-115933786:-|nuORF ENST00000369285.7_2_10:115932986-115933786:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7000732421875 2 523.779482 1045.54441 NaN NaN NaN NaN NaN NaN NaN 157.39 1 157.39 156.89 157.89 0 0 0 0 0.21404 1 31588 31588 13.906 0 1 25367 9117 16714 16720 25091 25091 0.023460367233838042 LDKYNPPD 8 Unmodified _LDKYNPPD_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2;ENST00000566635.5_1_15:28356911-28362639:-|nuORF ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23516845703125 2 481.234907 960.455261 0.2628 0.00012647 -0.032533 -1.5656E-05 0.23027 0.00011081 481.23480211227474 82.031 1.0903 82.031 81.546 82.636 0 71 30 3 0 0 0 0.66265 1 15902 15902 18.135 3.2967 1 5942000 25368 3540 16715 16721 25092 25092 -0.02654798236142142 LDLALKLLSWL 11 Unmodified _LDLALKLLSWL_ 0 0 0 CCNG2|p.F70Lfs*22|1|0.22|ENSG00000138764|chr4:77159433-77159433|T/-|frameshift_variant CCNG2|p.F70Lfs*22|1|0.22|ENSG00000138764|chr4:77159433-77159433|T/-|frameshift_variant CCNG2|p.F70Lfs*22|1|0.22|ENSG00000138764|chr4:77159433-77159433|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 642.9346313476562 2 642.899931 1283.78531 NaN NaN NaN NaN NaN NaN NaN 171.07 1 166.19 165.69 166.69 -4.873 0 0 0 0.224 1 33888 33888 13.042 0.80181 1 25369 431 16716 16722 25093 25093 0.15476852710617095 LDLAPYMP 8 Unmodified _LDLAPYMP_ 0 0 0 PLEKHM2|p.Q373Rfs*22|1|0.57|ENSG00000116786|chr1:15727184-15727184|C/-|frameshift_variant;PLEKHM2|p.E769Rfs*51|2|0.23|ENSG00000116786|chr1:15730622-15730622|C/-|frameshift_variant;nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2 PLEKHM2|p.Q373Rfs*22|1|0.57|ENSG00000116786|chr1:15727184-15727184|C/-|frameshift_variant PLEKHM2|p.Q373Rfs*22|1|0.57|ENSG00000116786|chr1:15727184-15727184|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2334899902344 2 460.233322 918.45209 NaN NaN NaN NaN NaN NaN NaN 134.03 1 129.21 128.71 129.71 -4.8175 0 0 0 0.21486 1 25802 25802 9.3474 0 1 25370 2954 16717 16723 25094 25094 -0.010397646145065664 LDLAYVITPF 10 Unmodified _LDLAYVITPF_ 0 0 0 REV__ENST00000433445.1_1_2:201981775-201994502:+|nuORF REV__ENST00000433445.1_1_2:201981775-201994502:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3385620117188 2 576.320983 1150.62741 NaN NaN NaN NaN NaN NaN NaN 72.261 1 68.722 68.222 69.222 -3.5385 0 0 0 0.22588 1 13704 13704 6.2058 1.8765 1 + 25371 21645 16718 16724 25095 25095 0.05812353451369745 LDLHKRLSL 9 Unmodified _LDLHKRLSL_ 0 0 0 REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7721557617188 2 547.837665 1093.66078 NaN NaN NaN NaN NaN NaN NaN 119.3 1 114.78 114.28 115.28 -4.5193 0 0 0 0.23508 1 23526 23526 7.9102 0 1 + 25372 15279 16719 16725 25096 25096 0.11769400013940867 LDLKRLRPLH 10 Unmodified _LDLKRLRPLH_ 0 0 0 REV__NLRC5|p.P816Rfs*30|1|0.28|ENSG00000140853|chr16:57031430-57031430|C/-|frameshift_variant REV__NLRC5|p.P816Rfs*30|1|0.28|ENSG00000140853|chr16:57031430-57031430|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7537231445312 2 630.898589 1259.78262 NaN NaN NaN NaN NaN NaN NaN 169.13 1 169.13 168.63 169.63 0 0 0 0 0.22588 1 34703 34703 3.5965 0 1 + 25373 16601 16720 16726 25097 25097 0.1631244209631859 LDLKVLNILY 10 Unmodified _LDLKVLNILY_ 0 0 0 tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1 tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1 tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2940063476562 2 602.371007 1202.72746 NaN NaN NaN NaN NaN NaN NaN 127.75 1 123.14 122.64 123.64 -4.6172 0 0 0 0.22588 1 25191 25191 3.9444 0.3479 1 25374 26482 16721 16727 25098 25098 0.13420590785199238 LDLLFHMVIC 10 Unmodified _LDLLFHMVIC_ 0 0 0 REV__ENST00000337859.10_1_2:187368819-187368876:+|nuORF REV__ENST00000337859.10_1_2:187368819-187368876:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2808837890625 2 602.316863 1202.61917 NaN NaN NaN NaN NaN NaN NaN 135.33 1 130.5 130 131 -4.8307 0 0 0 0.22588 1 26053 26053 6.7232 0.51738 1 + 25375 20679 16722 16728 25099 25099 0.025967599387513474 LDLMFSRFCI 10 Unmodified _LDLMFSRFCI_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|154|3|sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|154|3|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7680053710938 2 622.811944 1243.60934 NaN NaN NaN NaN NaN NaN NaN 163.15 1 163.15 162.65 163.65 0 0 0 0 0.22588 1 32859 32859 6.7232 0 1 + 25376 23619 16723 16729 25100 25100 -0.002724280666143386 LDLNCNPENND 11 Unmodified _LDLNCNPENND_ 0 0 0 REV__nc|ENSG00000088836|Q8NBS3-4|SLC4A11 REV__nc|ENSG00000088836|Q8NBS3-4|SLC4A11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7761840820312 2 630.761691 1259.50883 NaN NaN NaN NaN NaN NaN NaN 159.76 1 154.53 154.03 155.03 -5.2299 0 0 0 0.23379 1 31010 31010 5.2969 1.7004 1 + 25377 23962 16724 16730 25101 25101 -0.11054413586589362 LDLQIIQL 8 Unmodified _LDLQIIQL_ 0 0 0 REV__nc|ENSG00000173950|Q8NBI6-2|XXYLT1 REV__nc|ENSG00000173950|Q8NBI6-2|XXYLT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72357177734375 2 478.294768 954.574983 -0.012783 -6.1141E-06 -0.07549 -3.6106E-05 -0.088273 -4.222E-05 478.2946334491088 97.638 0.54832 97.638 97.296 97.844 0 25 15 2 0 0 0 0.40222 1 19096 19096 32.305 1.6689 1 1294800 + 25378 18383 16725 16731 25102 25102 0.09587815108432096 LDLQIIQL 8 Unmodified _LDLQIIQL_ 0 0 0 REV__nc|ENSG00000173950|Q8NBI6-2|XXYLT1 REV__nc|ENSG00000173950|Q8NBI6-2|XXYLT1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.294768 954.574983 -0.012783 -6.1141E-06 -0.07549 -3.6106E-05 -0.088273 -4.222E-05 478.2946334491088 97.638 0.54832 97.638 97.296 97.844 0 0 0 NaN 32.305 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1294800 + 25379 18383 16725 16731 0.09587815108432096 LDLQLKSAL 9 Unmodified _LDLQLKSAL_ 0 0 0 REV__nc|ENSG00000213921|A8MZ59-1|LEUTX REV__nc|ENSG00000213921|A8MZ59-1|LEUTX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 501.8095703125 2 500.8055 999.596446 0.30697 0.00015373 -0.097512 -4.8835E-05 0.20945 0.0001049 500.8054349682832 117.62 0.92757 113.21 112.57 113.5 -4.4088 51 25 3 0 0 0 0.27705 1 22637 22637 24.882 13.983 1 2167600 + 25380 19651 16726 16732 25103 25103 0.09663200137140393 LDLQLKSAL 9 Unmodified _LDLQLKSAL_ 0 0 0 REV__nc|ENSG00000213921|A8MZ59-1|LEUTX REV__nc|ENSG00000213921|A8MZ59-1|LEUTX MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 500.8055 999.596446 0.17902 8.9652E-05 -0.5453 -0.00027309 -0.36629 -0.00018344 500.8053216398663 117.78 0.98538 113.28 112.54 113.53 -4.502 0.042701 -0.00042272 NaN 24.882 52 27 3 NaN NaN NaN NaN 0 NaN NaN 0 2515900 + 25381 19651 16726 16732 0.09663200137140393 LDLQLKSAL 9 Unmodified _LDLQLKSAL_ 0 0 0 REV__nc|ENSG00000213921|A8MZ59-1|LEUTX REV__nc|ENSG00000213921|A8MZ59-1|LEUTX MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 500.8055 999.596446 0.23424 0.00011731 0.061182 3.064E-05 0.29542 0.00014795 500.8055465765422 117.83 0.66871 113.22 112.82 113.49 -4.6106 -0.015709 0.00018474 NaN 24.882 38 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2515200 + 25382 19651 16726 16732 0.09663200137140393 LDLQLKSAL 9 Unmodified _LDLQLKSAL_ 0 0 0 REV__nc|ENSG00000213921|A8MZ59-1|LEUTX REV__nc|ENSG00000213921|A8MZ59-1|LEUTX MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 500.8055 999.596446 0.30697 0.00015373 -0.097512 -4.8835E-05 0.20945 0.0001049 500.8054349682832 117.62 0.92757 113.21 112.57 113.5 -4.4088 -0.026991 2.579E-05 NaN 24.882 51 25 3 NaN NaN NaN NaN 0 NaN NaN 0 2167600 + 25383 19651 16726 16732 0.09663200137140393 LDLRRLFY 8 Unmodified _LDLRRLFY_ 0 0 0 REV__nc|ENSG00000171793|P17812-2|CTPS1 REV__nc|ENSG00000171793|P17812-2|CTPS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7838745117188 2 548.319109 1094.62366 0.35705 0.00019578 2.3453 0.001286 2.7024 0.0014818 548.3187182892063 159.49 0.17621 154.7 154.55 154.73 -4.7952 6 4 2 0 0 0 0.95284 1 31693 31693 20.871 3.9289 1 881880 + 25384 13607 16727 16733 25104 25104 0.0801372846817685 LDLSDVHSPP 10 Unmodified _LDLSDVHSPP_ 0 0 0 ENST00000609590.1_1_6:167417751-167458021:+|nuORF;nc|ENSG00000272980|O95684-2|CEP43;ENSG00000213066|ENST00000366847|CEP43 ENST00000609590.1_1_6:167417751-167458021:+|nuORF ENST00000609590.1_1_6:167417751-167458021:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2761840820312 2 540.272021 1078.52949 0.42458 0.00022939 -0.37829 -0.00020438 0.046291 2.501E-05 540.2717508544434 70.083 1.3036 66.616 66.182 67.486 -3.467 107 36 5 0 0 0 0.372 1 13361 13361 5.8681 4.1763 1 92739000 25385 7686 16728 16734 25105 25105 -0.0066345514460408594 LDLSEFVSR 9 Unmodified _LDLSEFVSR_ 0 0 0 REV__ENSG00000116039|ENST00000234396|ATP6V1B1 REV__ENSG00000116039|ENST00000234396|ATP6V1B1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2832641601562 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 154.16 1 148.94 148.44 149.44 -5.2209 0 0 0 0.20628 1 29884 29884 21.747 0 1 + 25386 15464 16729 16735 25106 25106 0.020531352350417365 LDLSVQYPPDN 11 Unmodified _LDLSVQYPPDN_ 0 0 0 SIGLEC11|p.E356D|2|0.2|ENSG00000161640|chr19:49959067-49959067|C/A|missense_variant SIGLEC11|p.E356D|2|0.2|ENSG00000161640|chr19:49959067-49959067|C/A|missense_variant SIGLEC11|p.E356D|2|0.2|ENSG00000161640|chr19:49959067-49959067|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7747192382812 2 630.808968 1259.60338 NaN NaN NaN NaN NaN NaN NaN 134.84 1 130.02 129.52 130.52 -4.8175 0 0 0 0.22595 1 25959 25959 11.495 2.7493 1 25387 25664 16730 16736 25107 25107 -0.016035317729574672 LDMAECNPW 9 Unmodified _LDMAECNPW_ 0 0 0 nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5;nc|ENSG00000084693|Q8NDL9-3|AGBL5 nc|ENSG00000084693|Q8NDL9-2|AGBL5 nc|ENSG00000084693|Q8NDL9-2|AGBL5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20233154296875 3 360.14926 1077.42595 NaN NaN NaN NaN NaN NaN NaN 155.8 1 150.52 150.02 151.02 -5.2854 0 0 0 0.23508 1 30221 30221 2.7352 0.23671 1 25388 94 16731 16737 25108 25108 -0.10966401848304486 LDMCLDLDE 9 Unmodified _LDMCLDLDE_ 0 0 0 MTPAP|p.F247C|1|0.47|ENSG00000107951|chr10:30336843-30336843|A/C|missense_variant MTPAP|p.F247C|1|0.47|ENSG00000107951|chr10:30336843-30336843|A/C|missense_variant MTPAP|p.F247C|1|0.47|ENSG00000107951|chr10:30336843-30336843|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269287109375 2 533.7252 1065.43585 0.37072 0.00019786 -1.6246 -0.0008671 -1.2539 -0.00066924 533.7243515256135 112.75 0.60396 108.22 107.9 108.51 -4.5259 20 16 2 0 0 0 0.68435 1 21668 21668 7.2892 0 1 1623200 25389 12172 16732 16738 25109 25109 -0.09425258633564226 LDMCPVPV 8 Unmodified _LDMCPVPV_ 0 0 0 ENST00000377503.6_1_5:159680387-159681146:-|nuORF;ENSG00000135083|ENST00000257536|CCNJL;nc|ENSG00000135083|Q8IV13|CCNJL ENST00000377503.6_1_5:159680387-159681146:-|nuORF ENST00000377503.6_1_5:159680387-159681146:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2150573730469 2 437.214075 872.413596 NaN NaN NaN NaN NaN NaN NaN 34.603 1 32.285 31.785 32.785 -2.3175 0 0 0 0.21486 1 6357 6357 9.3474 0.75416 1 25390 3898 16733 16739 25110 25110 -0.02771393520674792 LDMESDDAW 9 Unmodified _LDMESDDAW_ 0 0 0 nc|ENSG00000182541|P53671-3|LIMK2 nc|ENSG00000182541|P53671-3|LIMK2 nc|ENSG00000182541|P53671-3|LIMK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.271484375 2 541.210772 1080.40699 0.77854 0.00042135 0.35634 0.00019285 1.1349 0.00061421 541.2108814842856 107.71 0.86886 103.57 103.11 103.98 -4.135 68 24 4 0 0 0 0.87258 1 20787 20787 1.8442 0 1 14918000 25391 12501 16734 16740 25111 25111 -0.12999659938350305 LDMGHFNPLCN 11 Unmodified _LDMGHFNPLCN_ 0 0 0 REV__ENST00000487064.1_1_19:33832314-33832719:+|nuORF REV__ENST00000487064.1_1_19:33832314-33832719:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7772216796875 2 630.778633 1259.54271 NaN NaN NaN NaN NaN NaN NaN 161.15 1 156.36 155.86 156.86 -4.7952 0 0 0 0.23379 1 32049 32049 5.2969 1.7004 1 + 25392 22249 16735 16741 25112 25112 -0.07667663628512855 LDMGRKKKC 9 Unmodified _LDMGRKKKC_ 0 0 0 SNW1|p.M82Cfs*44|1|0.28|ENSG00000100603|chr14:77751405-77751405|T/-|frameshift_variant SNW1|p.M82Cfs*44|1|0.28|ENSG00000100603|chr14:77751405-77751405|T/-|frameshift_variant SNW1|p.M82Cfs*44|1|0.28|ENSG00000100603|chr14:77751405-77751405|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2011413574219 3 360.200178 1077.5787 NaN NaN NaN NaN NaN NaN NaN 131.47 1 126.7 126.2 127.2 -4.7725 0 0 0 0.23508 1 25308 25308 2.4985 1.0166 1 25393 25704 16736 16742 25113 25113 0.043018383389835435 LDMGRKKKC 9 Unmodified _LDMGRKKKC_ 0 0 0 SNW1|p.M82Cfs*44|1|0.28|ENSG00000100603|chr14:77751405-77751405|T/-|frameshift_variant SNW1|p.M82Cfs*44|1|0.28|ENSG00000100603|chr14:77751405-77751405|T/-|frameshift_variant SNW1|p.M82Cfs*44|1|0.28|ENSG00000100603|chr14:77751405-77751405|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2006530761719 3 360.200178 1077.5787 NaN NaN NaN NaN NaN NaN NaN 141.8 1 136.93 136.43 137.43 -4.8678 0 0 0 0.23508 1 27359 27359 2.7352 0 1 25394 25704 16736 16742 25114 25114 0.043018383389835435 LDMKFKLLA 9 Unmodified _LDMKFKLLA_ 0 0 0 ENST00000338513.1_1_1:35220669-35222948:+|nuORF ENST00000338513.1_1_1:35220669-35222948:+|nuORF ENST00000338513.1_1_1:35220669-35222948:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21649169921875 3 360.215822 1077.62564 NaN NaN NaN NaN NaN NaN NaN 154.02 1 148.8 148.3 149.3 -5.2209 0 0 0 0.23508 1 29857 29857 4.897 2.3985 1 25395 8832 16737 16743 25115 25115 0.08993021161791148 LDMLIAGGYI 10 Unmodified _LDMLIAGGYI_ 0 0 0 ENSG00000140832|ENST00000268485|MARVELD3 ENSG00000140832|ENST00000268485|MARVELD3 ENSG00000140832|ENST00000268485|MARVELD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2872314453125 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 98.328 1 98.328 97.828 98.828 0 0 0 0 0.22588 1 19271 19271 10.074 0.72649 1 25396 4328 16738 16744 25116 25116 0.02792151511107477 LDMTATTMVV 10 Unmodified _LDMTATTMVV_ 0 0 0 REV__ENSG00000126500|ENST00000682287|FLRT1 REV__ENSG00000126500|ENST00000682287|FLRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2764892578125 2 541.267035 1080.51952 0.30534 0.00016527 -0.5493 -0.00029732 -0.24396 -0.00013205 541.266785877818 123.58 0.68141 123.58 123.2 123.88 0 34 18 3 0 0 0 0.48672 1 24363 24363 25.399 4.9457 1 4989800 + 25397 15858 16739 16745 25117 25117 -0.01752102465866301 LDMTATTMVV 10 Unmodified _LDMTATTMVV_ 0 0 0 REV__ENSG00000126500|ENST00000682287|FLRT1 REV__ENSG00000126500|ENST00000682287|FLRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2756958007812 2 541.267035 1080.51952 0.27215 0.00014731 -0.46963 -0.0002542 -0.19748 -0.00010689 541.2666240033168 128.06 0.60513 123.44 123.09 123.7 -4.6214 38 16 3 0 0 0 0.40256 1 25274 25274 30.637 11.38 1 3079900 + 25398 15858 16739 16745 25118 25118 -0.01752102465866301 LDMTEEEPD 9 Unmodified _LDMTEEEPD_ 0 0 0 AKNA|p.K380Sfs*30|1|0.3|ENSG00000106948|chr9:114376670-114376670|G/-|frameshift_variant;nc|ENSG00000106948|Q7Z591-6|AKNA;nc|ENSG00000106948|Q7Z591-3|AKNA;ENSG00000106948|ENST00000374088|AKNA;nc|ENSG00000106948|Q7Z591-2|AKNA AKNA|p.K380Sfs*30|1|0.3|ENSG00000106948|chr9:114376670-114376670|G/-|frameshift_variant AKNA|p.K380Sfs*30|1|0.3|ENSG00000106948|chr9:114376670-114376670|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20172119140625 3 360.14635 1077.41722 NaN NaN NaN NaN NaN NaN NaN 146.05 1 140.94 140.44 141.44 -5.1108 0 0 0 0.23508 1 28240 28240 4.5289 2.0304 1 25399 112 16740 16746 25119 25119 -0.1183909700375807 LDNASFTY 8 Unmodified _LDNASFTY_ 0 0 0 REV__ZNF804B|p.P1231Tfs*23|1|0.28|ENSG00000182348|chr7:89336665-89336666|-/TCACC|frameshift_variant REV__ZNF804B|p.P1231Tfs*23|1|0.28|ENSG00000182348|chr7:89336665-89336666|-/TCACC|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2484436035156 2 465.713808 929.413062 0.54749 0.00025498 -0.38428 -0.00017897 0.16321 7.601E-05 465.71343483307146 114.08 0.97741 109.77 109.4 110.38 -4.3136 34 27 2 0 0 0 0.9383 1 21986 21986 13.906 3.0821 1 1285500 + 25400 18778 16741 16747 25120 25120 -0.05446773644530367 LDNCRSQMDY 10 Unmodified _LDNCRSQMDY_ 0 0 0 REV__KLHL1|p.F509Cfs*15|1|0.34|ENSG00000150361|chr13:69796850-69796851|AA/-|frameshift_variant REV__KLHL1|p.F509Cfs*15|1|0.34|ENSG00000150361|chr13:69796850-69796851|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7633056640625 2 622.755355 1243.49616 NaN NaN NaN NaN NaN NaN NaN 117.09 1 117.09 116.59 117.59 0 0 0 0 0.22588 1 23063 23063 6.2058 0.97511 1 + 25401 17029 16742 16748 25121 25121 -0.11585148250446764 LDNHRVLL 8 Unmodified _LDNHRVLL_ 0 0 0 REV__USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant REV__USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2601623535156 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 156.85 1 156.85 156.35 157.35 0 0 0 0 0.2343 1 31471 31471 0.12286 0 1 + 25402 14829 16743 16749 25122 25122 0.07092582400002811 LDNMVTGVL 9 Unmodified _LDNMVTGVL_ 0 0 0 REV__DYNC2H1|p.G2175D|1|0.25|ENSG00000187240|chr11:103184942-103184942|G/A|missense_variant REV__DYNC2H1|p.G2175D|1|0.25|ENSG00000187240|chr11:103184942-103184942|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.254638671875 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 169.75 1 164.96 164.46 165.46 -4.7898 0 0 0 0.19721 1 34401 34401 24.021 0.87215 1 + 25403 13765 16744 16750 25123 25123 0.013190054429401243 LDNPARVM 8 Unmodified _LDNPARVM_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2392578125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 121.34 1 121.34 120.84 121.84 0 0 0 0 0.20896 1 23919 23919 18.135 1.1927 1 25404 6305 16745 16751 25124 25124 0.003732718485366604 LDNRRKRE 8 Unmodified _LDNRRKRE_ 0 0 0 REV__ENSG00000116990|ENST00000372816|MYCL REV__ENSG00000116990|ENST00000372816|MYCL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7847900390625 2 543.809971 1085.60539 NaN NaN NaN NaN NaN NaN NaN 122.86 1 122.86 122.36 123.36 0 0 0 0 0.2074 1 24215 24215 19.439 0.18201 1 + 25405 15509 16746 16752 25125 25125 0.06600986546163767 LDNRRQRE 8 Unmodified _LDNRRQRE_ 0 0 0 REV__ENSG00000134323|ENST00000281043|MYCN REV__ENSG00000134323|ENST00000281043|MYCN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7769775390625 2 543.791778 1085.569 NaN NaN NaN NaN NaN NaN NaN 157.75 1 152.47 151.97 152.97 -5.2854 0 0 0 0.21486 1 30618 30618 7.9102 0.62092 1 + 25406 16206 16747 16753 25126 25126 0.02964109649474267 LDNVKLLY 8 Unmodified _LDNVKLLY_ 0 0 0 REV__ENSG00000162624|ENST00000356261|LHX8 REV__ENSG00000162624|ENST00000356261|LHX8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2719421386719 2 489.286943 976.559333 0.24105 0.00011794 0.085133 4.1655E-05 0.32618 0.0001596 489.2867591231387 126.07 0.56264 121.47 121.01 121.57 -4.5984 25 15 2 0 0 0 0.66265 1 24870 24870 18.135 0 1 1953800 + 25407 17510 16748 16754 25127 25127 0.0701152859138574 LDNVKLLY 8 Unmodified _LDNVKLLY_ 0 0 0 REV__ENSG00000162624|ENST00000356261|LHX8 REV__ENSG00000162624|ENST00000356261|LHX8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.286943 976.559333 0.18359 8.983E-05 0.020511 1.0036E-05 0.2041 9.9865E-05 489.2869824234605 121.66 0.70107 121.66 121.29 121.99 0 0.19687 0.00011417 NaN 18.135 30 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1653500 + 25408 17510 16748 16754 0.0701152859138574 LDNVKLLY 8 Unmodified _LDNVKLLY_ 0 0 0 REV__ENSG00000162624|ENST00000356261|LHX8 REV__ENSG00000162624|ENST00000356261|LHX8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.286943 976.559333 0.24105 0.00011794 0.085133 4.1655E-05 0.32618 0.0001596 489.2867591231387 126.07 0.56264 121.47 121.01 121.57 -4.5984 0.0093643 0.00017741 NaN 18.135 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1953800 + 25409 17510 16748 16754 0.0701152859138574 LDNVKLLY 8 Unmodified _LDNVKLLY_ 0 0 0 REV__ENSG00000162624|ENST00000356261|LHX8 REV__ENSG00000162624|ENST00000356261|LHX8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.286943 976.559333 0.40541 0.00019836 -0.60526 -0.00029614 -0.19984 -9.7781E-05 489.28664236028345 126.08 0.52071 121.31 121.11 121.63 -4.7681 -0.1526 -0.00049819 NaN 18.135 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1688700 + 25410 17510 16748 16754 0.0701152859138574 LDNVKLLY 8 Unmodified _LDNVKLLY_ 0 0 0 REV__ENSG00000162624|ENST00000356261|LHX8 REV__ENSG00000162624|ENST00000356261|LHX8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.286943 976.559333 -0.049869 -2.44E-05 0.20556 0.00010058 0.15569 7.6175E-05 489.2869542760489 126.06 0.61089 121.41 121.08 121.7 -4.6495 -0.053633 0.00029525 NaN 18.135 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 938870 + 25411 17510 16748 16754 0.0701152859138574 LDPDEDDEERQ 11 Unmodified _LDPDEDDEERQ_ 0 0 0 REV__ZNF280A|p.P143Qfs*6|1|0.43|ENSG00000169548|chr22:22515203-22515203|G/-|frameshift_variant REV__ZNF280A|p.P143Qfs*6|1|0.43|ENSG00000169548|chr22:22515203-22515203|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 680.6132202148438 2 680.778593 1359.54263 NaN NaN NaN NaN NaN NaN NaN 173.9 1 169.11 168.61 169.61 -4.7898 0 0 0 0.23476 1 35501 35501 4.5289 0 1 + 25412 18109 16749 16755 25128 25128 -0.12275713613848893 LDPDNYVFDY 10 Unmodified _LDPDNYVFDY_ 0 0 0 REV__tr|U7SIZ5|U7SIZ5_FUSNUPeptidaseM20dimerisationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02040PE=4SV=1 REV__tr|U7SIZ5|U7SIZ5_FUSNUPeptidaseM20dimerisationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02040PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7546997070312 2 630.774593 1259.53463 NaN NaN NaN NaN NaN NaN NaN 160.58 1 155.79 155.29 156.29 -4.7952 0 0 0 0.22588 1 31934 31934 6.7232 0.51738 1 + 25413 24900 16750 16756 25129 25129 -0.08475196072640756 LDPDVLEMD 9 Unmodified _LDPDVLEMD_ 0 0 0 REV__ENSG00000108854|ENST00000262435|SMURF2 REV__ENSG00000108854|ENST00000262435|SMURF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6964111328125 2 523.739165 1045.46378 NaN NaN NaN NaN NaN NaN NaN 159.31 1 159.31 158.81 159.81 0 0 0 0 0.23508 1 31984 31984 7.2892 0 1 + 25414 15144 16751 16757 25130 25130 -0.0571361238182817 LDPFNPLDL 9 Unmodified _LDPFNPLDL_ 0 0 0 REV__ISM1|p.R194Qfs*14|1|0.51|ENSG00000101230|chr20:13279827-13279828|-/C|frameshift_variant REV__ISM1|p.R194Qfs*14|1|0.51|ENSG00000101230|chr20:13279827-13279828|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2758178710938 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 165.9 1 160.95 160.45 161.45 -4.9484 0 0 0 0.23508 1 32453 32453 10.074 1.9184 1 + 25415 14769 16752 16758 25131 25131 0.013946343490943036 LDPGAGGRM 9 Unmodified _LDPGAGGRM_ 0 0 0 REV__ENST00000361084.9_1_1:156030999-156031116:+|nuORF REV__ENST00000361084.9_1_1:156030999-156031116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2149658203125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 77.646 1 77.646 77.146 78.146 0 0 0 0 0.23508 1 15100 15100 7.9102 0 1 + 25416 20877 16753 16759 25132 25132 -0.02387587702583005 LDPGAGGRM 9 Unmodified _LDPGAGGRM_ 0 0 0 REV__ENST00000361084.9_1_1:156030999-156031116:+|nuORF REV__ENST00000361084.9_1_1:156030999-156031116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2267150878906 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 108.37 1 104.05 103.55 104.55 -4.32 0 0 0 0.23508 1 21351 21351 7.9102 0 1 + 25417 20877 16753 16759 25133 25133 -0.02387587702583005 LDPGVLARPQ 10 Unmodified _LDPGVLARPQ_ 0 0 0 REV__ENST00000357575.8_1_18:77663724-77663979:-|nuORF REV__ENST00000357575.8_1_18:77663724-77663979:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2724609375 2 533.306198 1064.59784 NaN NaN NaN NaN NaN NaN NaN 156.05 1 156.05 155.55 156.55 0 0 0 0 0.22588 1 31295 31295 8.7454 0.15213 1 + 25418 20827 16754 16760 25134 25134 0.06812834225888764 LDPHAMFDAY 10 Unmodified _LDPHAMFDAY_ 0 0 0 REV__OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant REV__OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2683715820312 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 148.22 1 143.16 142.66 143.66 -5.0595 0 0 0 0.22588 1 28706 28706 6.7232 0 1 + 25419 16792 16755 16761 25135 25135 -0.0754679753374603 LDPHLDHPC 9 Unmodified _LDPHLDHPC_ 0 0 0 nc|ENSG00000169871|Q9BRZ2-3|TRIM56;nc|ENSG00000169871|Q9BRZ2-2|TRIM56;ENSG00000169871|ENST00000306085|TRIM56 nc|ENSG00000169871|Q9BRZ2-3|TRIM56 nc|ENSG00000169871|Q9BRZ2-3|TRIM56 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6890869140625 2 523.739834 1045.46511 NaN NaN NaN NaN NaN NaN NaN 131.28 1 131.28 130.78 131.78 0 0 0 0 0.19684 1 25954 25954 0.12781 0 1 25420 6015 16756 16762 25136 25136 -0.05579933502417589 LDPHLHET 8 Unmodified _LDPHLHET_ 0 0 0 REV__ENSG00000106397|ENST00000223127|PLOD3 REV__ENSG00000106397|ENST00000223127|PLOD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2384033203125 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 164.06 1 159.27 158.77 159.77 -4.7898 0 0 0 0.21486 1 32754 32754 8.5933 0.68312 1 + 25421 15049 16757 16763 25137 25137 -0.015319761420073519 LDPLTRNRP 9 Unmodified _LDPLTRNRP_ 0 0 0 REV__ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant REV__ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2612915039062 2 541.309272 1080.60399 0.2807 0.00015195 2.1924 0.0011868 2.4731 0.0013387 541.8121726040315 132.79 0.1787 127.99 127.93 128.11 -4.799 6 4 2 0 0 0 0.85111 1 25578 25578 6.7232 0.99131 1 712680 + 25422 18543 16758 16764 25138 25138 0.06691352457414723 LDPPFAPACL 10 Unmodified _LDPPFAPACL_ 0 0 0 REV__ENST00000520651.1_1_2:190627550-190627673:+|nuORF REV__ENST00000520651.1_1_2:190627550-190627673:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2650146484375 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 116.98 1 112.4 111.9 112.9 -4.5815 0 0 0 2.8426 1 22446 22446 1.9275 0 1 + 25423 22637 16759 16765 25139 25139 -0.0038040417741740384 LDPPPRRDRRR 11 Unmodified _LDPPPRRDRRR_ 0 0 0 REV__ENST00000556433.5_1_14:69445007-69445439:-|nuORF REV__ENST00000556433.5_1_14:69445007-69445439:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 717.371337890625 2 717.413457 1432.81236 NaN NaN NaN NaN NaN NaN NaN 166.99 1 162.04 161.54 162.54 -4.948 0 0 0 0.23379 1 32799 32799 5.2969 0 1 + 25424 22995 16760 16766 25140 25140 0.11326774094345637 LDPQLFMARL 10 Unmodified _LDPQLFMARL_ 0 0 0 REV__ENST00000573175.1_1_17:4451225-4453465:-|nuORF REV__ENST00000573175.1_1_17:4451225-4453465:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2757568359375 2 602.331359 1202.64816 NaN NaN NaN NaN NaN NaN NaN 164.33 1 159.29 158.79 159.79 -5.0446 0 0 0 0.22588 1 32041 32041 6.2058 0 1 + 25425 16112 16761 16767 25141 25141 0.05494620559397845 LDPRALQRP 9 Unmodified _LDPRALQRP_ 0 0 0 ENST00000293880.9_1_11:57100225-57103093:-|nuORF ENST00000293880.9_1_11:57100225-57103093:-|nuORF ENST00000293880.9_1_11:57100225-57103093:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.260986328125 2 533.311815 1064.60908 NaN NaN NaN NaN NaN NaN NaN 157.42 1 157.42 156.92 157.92 0 0 0 0 0.23508 1 31594 31594 10.074 1.3285 1 25426 8488 16762 16768 25142 25142 0.07935656320023554 LDPRLSVY 8 Unmodified _LDPRLSVY_ 0 0 0 REV__QRICH1|p.Q276R|1|0.07|ENSG00000198218|chr3:49057373-49057373|T/C|missense_variant REV__QRICH1|p.Q276R|1|0.07|ENSG00000198218|chr3:49057373-49057373|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7689208984375 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 84.346 1 84.346 83.846 84.846 0 0 0 0 0.20618 1 16448 16448 20.454 3.5113 1 + 25427 19399 16763 16769 25143 25143 0.04098071414523474 LDPRLSVY 8 Unmodified _LDPRLSVY_ 0 0 0 REV__QRICH1|p.Q276R|1|0.07|ENSG00000198218|chr3:49057373-49057373|T/C|missense_variant REV__QRICH1|p.Q276R|1|0.07|ENSG00000198218|chr3:49057373-49057373|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76885986328125 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 87.874 1 84.124 83.624 84.624 -3.7501 0 0 0 0.19342 1 16813 16813 26.884 0.54238 1 + 25428 19399 16763 16769 25144 25144 0.04098071414523474 LDPRRWKRLET 11 Unmodified _LDPRRWKRLET_ 0 0 0 nc|ENSG00000165699|Q92574-2|TSC1;ENSG00000165699|ENST00000298552|TSC1;ENST00000493467.5_1_9:135785858-135804259:-|nuORF;TSC1|p.L463*|1|0.4|ENSG00000165699|chr9:132906781-132906781|A/-|frameshift_variant;TSC1|p.L910Wfs*21|1|0.36|ENSG00000165699|chr9:132897507-132897507|A/-|frameshift_variant nc|ENSG00000165699|Q92574-2|TSC1 nc|ENSG00000165699|Q92574-2|TSC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26446533203125 3 490.616037 1468.82628 0.20357 9.9874E-05 -0.63081 -0.00030949 -0.42724 -0.00020961 490.61564504812765 147.48 0.87886 142.33 142.06 142.94 -5.1557 46 24 2 0 0 0 0.96158 1 28499 28499 3.134 1.9191 1 5158200 25429 5654 16764 16770 25145 25145 0.1106200680276288 LDPRWLEQRDR 11 Unmodified _LDPRWLEQRDR_ 0 0 0 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1;ENST00000498259.1_1_22:30735061-30736359:-|nuORF SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3904418945312 2 742.391856 1482.76916 NaN NaN NaN NaN NaN NaN NaN 158.58 1 158.58 158.08 159.08 0 0 0 0 0.23476 1 31839 31839 4.5289 1.5336 1 25430 1916 16765 16771 25146 25146 0.04708539526382083 LDPTRSWDSC 10 Unmodified _LDPTRSWDSC_ 0 0 0 REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2767231101948278|0.4573538105707593|1.48|479.0|18|2|anti-sense REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2767231101948278|0.4573538105707593|1.48|479.0|18|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2560424804688 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 162.66 1 157.51 157.01 158.01 -5.1438 0 0 0 0.22588 1 31612 31612 6.2058 0 1 + 25431 13028 16766 16772 25147 25147 -0.07948887027441742 LDPTRSWSPW 10 Unmodified _LDPTRSWSPW_ 0 0 0 REV__AluSx1_dup14869|chr2:159900847-159901138:-|1.0392758270608995|0.1270827311353014|3.03|478.0|20|2|anti-sense REV__AluSx1_dup14869|chr2:159900847-159901138:-|1.0392758270608995|0.1270827311353014|3.03|478.0|20|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.769775390625 2 622.806562 1243.59857 NaN NaN NaN NaN NaN NaN NaN 166.49 1 161.51 161.01 162.01 -4.9811 0 0 0 0.22588 1 32640 32640 10.074 0.6908 1 + 25432 13030 16767 16773 25148 25148 -0.013483711250501074 LDPWIQCGY 9 Unmodified _LDPWIQCGY_ 0 0 0 ENST00000521304.1_1_2:89533891-89534354:-|nuORF ENST00000521304.1_1_2:89533891-89534354:-|nuORF ENST00000521304.1_1_2:89533891-89534354:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7664794921875 2 547.75241 1093.49027 NaN NaN NaN NaN NaN NaN NaN 140.64 1 135.65 135.15 136.15 -4.9877 0 0 0 0.23508 1 27069 27069 8.5933 1.304 1 25433 10842 16768 16774 25149 25149 -0.05273878699836132 LDQEGLFLGT 10 Unmodified _LDQEGLFLGT_ 0 0 0 REV__ENST00000491270.1_1_10:76995548-76995725:-|nuORF REV__ENST00000491270.1_1_10:76995548-76995725:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7853393554688 2 546.782222 1091.54989 0.22266 0.00012175 0.0069949 3.8247E-06 0.22966 0.00012557 546.7821151206189 138.26 0.86261 133.62 133.19 134.05 -4.6413 61 24 3 0 0 0 0.29062 1 27308 27308 38.176 0 1 21280000 + 25434 22312 16769 16775 25150 25150 0.007777155151870829 LDQKSRRY 8 Unmodified _LDQKSRRY_ 0 0 0 ENST00000560130.1_1_14:102551081-102551111:-|nuORF ENST00000560130.1_1_14:102551081-102551111:-|nuORF ENST00000560130.1_1_14:102551081-102551111:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2843017578125 2 533.293622 1064.57269 NaN NaN NaN NaN NaN NaN NaN 82.005 1 78.145 77.645 78.645 -3.8605 0 0 0 0.20294 1 15575 15575 23.148 6.2061 1 25435 11281 16770 16776 25151 25151 0.04298779423334054 LDQLQLEG 8 Unmodified _LDQLQLEG_ 0 0 0 PNPLA8|p.Y737C|1|0.25|ENSG00000135241|chr7:108472540-108472540|T/C|missense_variant;PNPLA8|p.K736E|1|0.07|ENSG00000135241|chr7:108472544-108472544|T/C|missense_variant;nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;PNPLA8|p.T757Qfs*10|1|0.38|ENSG00000135241|chr7:108472481-108472481|T/-|frameshift_variant;ENSG00000135241|ENST00000257694|PNPLA8 PNPLA8|p.Y737C|1|0.25|ENSG00000135241|chr7:108472540-108472540|T/C|missense_variant PNPLA8|p.Y737C|1|0.25|ENSG00000135241|chr7:108472540-108472540|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.24151611328125 2 458.242732 914.470912 0.1328 6.0856E-05 0.043502 1.9935E-05 0.1763 8.079E-05 458.24272094068834 89.145 1.2308 89.145 88.682 89.913 0 92 34 4 0 0 0 0.27447 1 17535 17535 37.974 1.847 1 77483000 25436 3907 16771 16777 25152 25152 0.010254882809135779 LDQLQLEG 8 Unmodified _LDQLQLEG_ 0 0 0 PNPLA8|p.Y737C|1|0.25|ENSG00000135241|chr7:108472540-108472540|T/C|missense_variant;PNPLA8|p.K736E|1|0.07|ENSG00000135241|chr7:108472544-108472544|T/C|missense_variant;nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;PNPLA8|p.T757Qfs*10|1|0.38|ENSG00000135241|chr7:108472481-108472481|T/-|frameshift_variant;ENSG00000135241|ENST00000257694|PNPLA8 PNPLA8|p.Y737C|1|0.25|ENSG00000135241|chr7:108472540-108472540|T/C|missense_variant PNPLA8|p.Y737C|1|0.25|ENSG00000135241|chr7:108472540-108472540|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22760009765625 2 458.242732 914.470912 -0.10521 -4.821E-05 0.16201 7.4238E-05 0.0568 2.6028E-05 458.2427716676065 92.973 1.2064 88.982 88.449 89.656 -3.9907 113 34 5 0 0 0 0.042326 2 18149 18149;18208 88.904 7.0134 1 116410000 25437 3907 16771 16777 25153;25154 25153 0.010254882809135779 LDQLQLEG 8 Unmodified _LDQLQLEG_ 0 0 0 PNPLA8|p.Y737C|1|0.25|ENSG00000135241|chr7:108472540-108472540|T/C|missense_variant;PNPLA8|p.K736E|1|0.07|ENSG00000135241|chr7:108472544-108472544|T/C|missense_variant;nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;PNPLA8|p.T757Qfs*10|1|0.38|ENSG00000135241|chr7:108472481-108472481|T/-|frameshift_variant;ENSG00000135241|ENST00000257694|PNPLA8 PNPLA8|p.Y737C|1|0.25|ENSG00000135241|chr7:108472540-108472540|T/C|missense_variant PNPLA8|p.Y737C|1|0.25|ENSG00000135241|chr7:108472540-108472540|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2418518066406 2 458.242732 914.470912 0.070743 3.2418E-05 -0.04549 -2.0846E-05 0.025253 1.1572E-05 458.2426683325484 93.02 1.3757 89.176 88.65 90.026 -3.844 115 39 4 0 0 0 0.5707 1 17993 17993 24.021 1.2843 1 105910000 25438 3907 16771 16777 25155 25155 0.010254882809135779 LDQLQLTM 8 Unmodified _LDQLQLTM_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2544250488281 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 148.66 1 143.51 143.01 144.01 -5.1557 0 0 0 0.21486 1 28787 28787 12.532 0 1 + 25439 15567 16772 16778 25156 25156 0.013190054429287557 LDQMFREPPK 10 Unmodified _LDQMFREPPK_ 0 0 0 FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant;FBXO38|p.N697Kfs*44|1|0.3|ENSG00000145868|chr5:148427376-148427377|-/A|frameshift_variant;FBXO38|p.S849Afs*20|1|0.38|ENSG00000145868|chr5:148427834-148427834|G/-|frameshift_variant;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38 FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.749755859375 2 630.823898 1259.63324 NaN NaN NaN NaN NaN NaN NaN 162.89 1 157.75 157.25 158.25 -5.1438 0 0 0 0.22588 1 31667 31667 7.609 0 1 25440 4626 16773 16779 25157 25157 0.013811286913778531 LDQQGAGYRA 10 Unmodified _LDQQGAGYRA_ 0 0 0 REV__ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant REV__ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20208740234375 3 360.180717 1077.52032 NaN NaN NaN NaN NaN NaN NaN 63.531 1 60.274 59.774 60.774 -3.2567 0 0 0 0.22588 1 11922 11922 3.3196 0.3244 1 + 25441 13034 16774 16780 25158 25158 -0.015338037102765156 LDQRTISF 8 Unmodified _LDQRTISF_ 0 0 0 ENSG00000175143|ENST00000642005|OR2T1;nc|ENSG00000175143|O43869|OR2T1 ENSG00000175143|ENST00000642005|OR2T1 ENSG00000175143|ENST00000642005|OR2T1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26397705078125 2 490.263999 978.513445 0.0073845 3.6203E-06 0.13078 6.4117E-05 0.13816 6.7737E-05 490.264027526858 56.438 1.1201 56.438 55.973 57.093 0 97 31 4 0 0 0 8448 1 10817 10817 1.4551 0 1 20526000 25442 6388 16775 16781 25159 25159 0.02332883409144415 LDQRTISF 8 Unmodified _LDQRTISF_ 0 0 0 ENSG00000175143|ENST00000642005|OR2T1;nc|ENSG00000175143|O43869|OR2T1 ENSG00000175143|ENST00000642005|OR2T1 ENSG00000175143|ENST00000642005|OR2T1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26190185546875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 77.635 1 77.635 77.135 78.135 0 0 0 0 0.20618 1 15097 15097 20.454 2.3186 1 25443 6388 16775 16781 25160 25160 0.02332883409144415 LDQRTISF 8 Unmodified _LDQRTISF_ 0 0 0 ENSG00000175143|ENST00000642005|OR2T1;nc|ENSG00000175143|O43869|OR2T1 ENSG00000175143|ENST00000642005|OR2T1 ENSG00000175143|ENST00000642005|OR2T1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26397705078125 2 490.263999 978.513445 0.064146 3.1448E-05 0.10466 5.1312E-05 0.16881 8.2761E-05 490.2640316435626 59.279 1.7152 56.368 55.784 57.5 -2.9105 129 48 4 0 0 0 8448 1 11491 11491 2.643 0.95116 1 42586000 25444 6388 16775 16781 25161 25161 0.02332883409144415 LDQTRLELG 9 Unmodified _LDQTRLELG_ 0 0 0 REV__nc|ENSG00000061337|Q9Y250-5|LZTS1 REV__nc|ENSG00000061337|Q9Y250-5|LZTS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2578735351562 2 522.787838 1043.56112 0.52889 0.00027649 -0.51944 -0.00027156 0.0094438 4.9371E-06 522.7876792358401 47.918 0.4567 47.918 47.577 48.034 0 22 12 2 0 0 0 0.81703 1 9051 9051 10.074 1.3285 1 1694700 + 25445 14149 16776 16782 25162 25162 0.04108537609317864 LDQVQLHLE 9 Unmodified _LDQVQLHLE_ 0 0 0 VEPH1|p.T738Hfs*27|1|0.26|ENSG00000197415|chr3:157265579-157265579|T/-|frameshift_variant;nc|ENSG00000197415|Q14D04-2|VEPH1;ENSG00000197415|ENST00000362010|VEPH1 VEPH1|p.T738Hfs*27|1|0.26|ENSG00000197415|chr3:157265579-157265579|T/-|frameshift_variant VEPH1|p.T738Hfs*27|1|0.26|ENSG00000197415|chr3:157265579-157265579|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7688598632812 2 547.795663 1093.57677 0.11772 6.4489E-05 0.62365 0.00034163 0.74138 0.00040612 547.795732724118 142.42 0.68524 137.39 137.17 137.86 -5.0261 43 19 4 0 0 0 0.54076 1 27404 27404 17.113 2.7075 1 3350300 25446 7364 16777 16783 25163 25163 0.03372824126404339 LDQWATRAY 9 Unmodified _LDQWATRAY_ 0 0 0 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21881103515625 3 375.189212 1122.54581 0.30329 0.00011379 -0.46554 -0.00017467 -0.16225 -6.0875E-05 375.1889873018052 31.275 3.511 29.248 26.881 30.392 -2.0264 204 99 3 0 0 0 0.72996 1 5589 5589 4.897 0.36815 1 5877100 25447 2913 16778 16784 25164 25164 -0.010563291878725067 LDRALFEWDRY 11 Unmodified _LDRALFEWDRY_ 0 0 0 REV__sp|Q6SW50|CVC1_HCMVMCapsidvertexcomponent1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC1PE=3SV=1 REV__sp|Q6SW50|CVC1_HCMVMCapsidvertexcomponent1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC1PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3729248046875 2 742.370058 1482.72556 NaN NaN NaN NaN NaN NaN NaN 163.28 1 158.22 157.72 158.72 -5.0648 0 0 0 0.23379 1 31765 31765 5.2969 0.39987 1 + 25448 24718 16779 16785 25165 25165 0.0035093002927624184 LDRDKTVKRRF 11 Unmodified _LDRDKTVKRRF_ 0 0 0 REV__FAM118A|p.R346Tfs*7|1|0.31|ENSG00000100376|chr22:45336385-45336386|-/A|frameshift_variant REV__FAM118A|p.R346Tfs*7|1|0.31|ENSG00000100376|chr22:45336385-45336386|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7333068847656 3 478.616037 1432.82628 NaN NaN NaN NaN NaN NaN NaN 143.75 1 138.85 138.35 139.35 -4.8982 0 0 0 0.22632 1 27747 27747 0.03141 0 1 + 25449 14704 16780 16786 25166 25166 0.12718006802765558 LDREGLGP 8 Unmodified _LDREGLGP_ 0 0 0 REV__nc|ENSG00000160323|Q76LX8-4|ADAMTS13 REV__nc|ENSG00000160323|Q76LX8-4|ADAMTS13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 428.1341247558594 2 428.729792 855.445031 0.09033 3.8727E-05 0.16076 6.8922E-05 0.25109 0.00010765 428.72970306961616 26.165 0.41975 24.53 24.23 24.65 -1.6347 16 11 2 0 0 0 1.0249 1 4323 4323 5.7604 3.1829 1 510070 + 25450 24117 16781 16787 25167 25167 0.01152638829296393 LDREQHDQY 9 Unmodified _LDREQHDQY_ 0 0 0 ENSG00000165194|ENST00000373034|PCDH19;nc|ENSG00000165194|Q8TAB3-3|PCDH19;nc|ENSG00000165194|Q8TAB3-2|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2743530273438 2 602.273084 1202.53161 NaN NaN NaN NaN NaN NaN NaN 126.69 1 122.07 121.57 122.57 -4.6172 0 0 0 0.23508 1 24982 24982 7.2892 0.56607 1 25451 5606 16782 16788 25168 25168 -0.06155026406804609 LDRFFKRL 8 Unmodified _LDRFFKRL_ 0 0 0 REV__ENST00000377705.5_1_1:6585202-6585712:-|nuORF REV__ENST00000377705.5_1_1:6585202-6585712:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7933959960938 2 547.827101 1093.63965 0.18221 9.982E-05 1.8782 0.0010289 2.0604 0.0011288 547.8286762807569 155.11 0.21707 149.82 149.68 149.89 -5.2854 6 5 2 0 0 0 1.0191 1 30055 30055 4.756 0 1 895130 + 25452 21104 16783 16789 25169 25169 0.09657434705104606 LDRGLDIYV 9 Unmodified _LDRGLDIYV_ 0 0 0 nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-2|FLII MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2843627929688 2 532.292756 1062.57096 0.47582 0.00025328 -0.6149 -0.00032731 -0.13908 -7.4033E-05 532.2923487723357 105.32 0.66221 100.94 100.53 101.19 -4.3764 48 18 3 0 0 0 0.52396 1 20152 20152 18.146 2.8979 1 6723600 25453 6535 16784 16790 25170 25170 0.04217725614716983 LDRHVINLSH 10 Unmodified _LDRHVINLSH_ 0 0 0 REV__ENSG00000178607|ENST00000433197|ERN1 REV__ENSG00000178607|ENST00000433197|ERN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2993774414062 2 602.333279 1202.652 NaN NaN NaN NaN NaN NaN NaN 171.39 1 166.52 166.02 167.02 -4.873 0 0 0 0.22588 1 33964 33964 12.241 0 1 + 25454 18615 16785 16791 25171 25171 0.05878426377466894 LDRIGTDGDCS 11 Unmodified _LDRIGTDGDCS_ 0 0 0 ENSG00000109182|ENST00000226432|CWH43 ENSG00000109182|ENST00000226432|CWH43 ENSG00000109182|ENST00000226432|CWH43 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3152465820312 2 576.253502 1150.49245 NaN NaN NaN NaN NaN NaN NaN 157.51 1 157.51 157.01 158.01 0 0 0 0 0.23476 1 31615 31615 4.5289 0.19963 1 25455 2521 16786 16792 25172 25172 -0.076774947526701 LDRIKKLYRKH 11 Unmodified _LDRIKKLYRKH_ 0 0 0 REV__ENSG00000105397|ENST00000525621|TYK2 REV__ENSG00000105397|ENST00000525621|TYK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2684326171875 3 490.640294 1468.89905 NaN NaN NaN NaN NaN NaN NaN 146.21 1 146.21 145.71 146.71 0 0 0 0 0.23698 1 29232 29232 0.45452 0 1 + 25456 14987 16787 16793 25173 25173 0.18335760596210093 LDRLEAELK 9 Unmodified _LDRLEAELK_ 0 0 0 tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1 tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1 tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7926025390625 2 543.811313 1085.60807 0.2756 0.00014987 -0.59922 -0.00032586 -0.32363 -0.00017599 543.8112240612937 62.091 0.4589 59.129 58.864 59.323 -2.9614 19 12 2 0 0 0 0.45788 1 11995 11995 26.268 0 1 810430 25457 26483 16788 16794 25174 25174 0.06869397160448898 LDRLEAELK 9 Unmodified _LDRLEAELK_ 0 0 0 tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1 tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1 tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7861328125 2 543.811313 1085.60807 0.30785 0.00016741 -0.7041 -0.0003829 -0.39625 -0.00021548 543.8112336291953 62.445 0.45181 59.205 59.002 59.454 -3.2395 22 12 2 0 0 0 0.545 1 11741 11741 29.841 0 1 812430 25458 26483 16788 16794 25175 25175 0.06869397160448898 LDRLEVVS 8 Unmodified _LDRLEVVS_ 0 0 0 nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2;STRIP2|p.R123W|1|0.26|ENSG00000128578|chr7:129451705-129451705|C/T|missense_variant;STRIP2|p.Y154Ifs*25|1|0.03|ENSG00000128578|chr7:129453276-129453277|-/ATCT|frameshift_variant nc|ENSG00000128578|Q9ULQ0-2|STRIP2 nc|ENSG00000128578|Q9ULQ0-2|STRIP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24639892578125 2 465.766374 929.518196 -0.081295 -3.7864E-05 0.11999 5.5889E-05 0.0387 1.8025E-05 465.76640780323845 131.33 0.7491 126.69 126.28 127.03 -4.6359 32 20 2 0 0 0 0.97173 1 25860 25860 7.9102 0 1 5050200 25459 3528 16789 16795 25176 25176 0.05061767551922003 LDRLSELGY 9 Unmodified _LDRLSELGY_ 0 0 0 REV__INSRR|p.L920Cfs*37|2|0.34|ENSG00000027644|chr1:156844261-156844261|C/-|frameshift_variant REV__INSRR|p.L920Cfs*37|2|0.34|ENSG00000027644|chr1:156844261-156844261|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2822875976562 2 533.282389 1064.55022 0.11607 6.1899E-05 -0.29865 -0.00015927 -0.18258 -9.7368E-05 533.2822276099546 97.396 2.1933 93.299 92.281 94.474 -4.0978 199 62 4 0 0 0 0.46882 1 19328 19328 21.537 3.1639 1 71232000 + 25460 23664 16790 16796 25177 25177 0.020531352350417365 LDRLTLDQL 9 Unmodified _LDRLTLDQL_ 0 0 0 REV__ENSG00000149428|ENST00000617285|HYOU1 REV__ENSG00000149428|ENST00000617285|HYOU1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7774047851562 2 543.811313 1085.60807 0.25077 0.00013637 -0.1826 -9.93E-05 0.068169 3.7071E-05 543.8111349301619 138.75 0.67303 134.11 133.81 134.48 -4.6439 30 18 2 0 0 0 0.12505 2 27435 27435;27443 47.749 3.9763 1 3946000 + 25461 17007 16791 16797 25178;25179 25178 0.06869397160471635 LDRLTLDQL 9 Unmodified _LDRLTLDQL_ 0 0 0 REV__ENSG00000149428|ENST00000617285|HYOU1 REV__ENSG00000149428|ENST00000617285|HYOU1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7922973632812 2 543.811313 1085.60807 0.092769 5.0449E-05 -0.23272 -0.00012656 -0.13995 -7.6107E-05 543.8111513062221 139.18 0.57799 134.23 133.95 134.53 -4.952 33 15 3 0 0 0 0.053942 1 26796 26796 69.105 5.1444 1 3031000 + 25462 17007 16791 16797 25180 25180 0.06869397160471635 LDRLTLDQL 9 Unmodified _LDRLTLDQL_ 0 0 0 REV__ENSG00000149428|ENST00000617285|HYOU1 REV__ENSG00000149428|ENST00000617285|HYOU1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.811313 1085.60807 0.25077 0.00013637 -0.1826 -9.93E-05 0.068169 3.7071E-05 543.8111349301619 138.75 0.67303 134.11 133.81 134.48 -4.6439 -0.14177 -0.00010078 NaN 69.105 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3946000 + 25463 17007 16791 16797 0.06869397160471635 LDRQSSTL 8 Unmodified _LDRQSSTL_ 0 0 0 REV__ENST00000474341.5_1_2:9017150-9098660:-|nuORF REV__ENST00000474341.5_1_2:9017150-9098660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2445983886719 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 94.454 1 90.263 89.763 90.763 -4.1911 0 0 0 0.21452 1 18016 18016 13.508 0.97634 1 + 25464 16750 16792 16798 25181 25181 0.014560065124328503 LDRQSSTL 8 Unmodified _LDRQSSTL_ 0 0 0 REV__ENST00000474341.5_1_2:9017150-9098660:-|nuORF REV__ENST00000474341.5_1_2:9017150-9098660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2451171875 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 126.97 1 122.18 121.68 122.68 -4.7958 0 0 0 0.2074 1 24371 24371 19.439 4.8573 1 + 25465 16750 16792 16798 25182 25182 0.014560065124328503 LDRRENDE 8 Unmodified _LDRRENDE_ 0 0 0 nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.P538Lfs*72|1|0.39|ENSG00000167258|chr17:39471441-39471441|C/-|frameshift_variant;CDK12|p.P536Hfs*74|1|0.37|ENSG00000167258|chr17:39471435-39471435|C/-|frameshift_variant;CDK12|p.P526Lfs*84|1|0.16|ENSG00000167258|chr17:39471406-39471406|C/-|frameshift_variant;CDK12|p.P683Qfs*70|1|0.34|ENSG00000167258|chr17:39490669-39490669|C/-|frameshift_variant;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;CDK12|p.K90R|1|0.09|ENSG00000167258|chr17:39462340-39462340|A/G|missense_variant nc|ENSG00000167258|Q9NYV4-2|CDK12 nc|ENSG00000167258|Q9NYV4-2|CDK12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6922607421875 2 523.746702 1045.47885 NaN NaN NaN NaN NaN NaN NaN 116.99 1 116.99 116.49 117.49 0 0 0 0 0.21486 1 23040 23040 12.532 0 1 25466 5797 16793 16799 25183 25183 -0.04206984469624331 LDRRLPIY 8 Unmodified _LDRRLPIY_ 0 0 0 ENST00000426194.1_1_18:30351015-30353299:+|nuORF ENST00000426194.1_1_18:30351015-30353299:+|nuORF ENST00000426194.1_1_18:30351015-30353299:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6971435546875 2 523.311284 1044.60801 0.18427 9.6433E-05 -2.1129 -0.0011057 -1.9287 -0.0010093 523.3115354047175 111.55 0.21155 111.55 111.48 111.69 0 7 5 2 0 0 0 0.97994 1 21936 21936 15.768 9.5624 1 524930 25467 9721 16794 16800 25184 25184 0.0874944195113585 LDRVKKVA 8 Unmodified _LDRVKKVA_ 0 0 0 REV__MAP3K12|p.S536Lfs*35|1|0.36|ENSG00000139625|chr12:53483098-53483099|-/G|frameshift_variant REV__MAP3K12|p.S536Lfs*35|1|0.36|ENSG00000139625|chr12:53483098-53483099|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 139.42 1 134.57 134.07 135.07 -4.8492 0 0 0 0.23837 1 26876 26876 0.12286 0 1 + 25468 16526 16795 16801 25185 25185 0.1198605692242154 LDSEEPLL 8 Unmodified _LDSEEPLL_ 0 0 0 REV__ENSG00000173769|ENST00000309765|TOPAZ1 REV__ENSG00000173769|ENST00000309765|TOPAZ1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2388000488281 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 134.84 1 130.2 129.7 130.7 -4.6399 0 0 0 0.21323 1 26594 26594 14.582 0 1 + 25469 18373 16796 16802 25186 25186 -0.0009733381323258072 LDSEVKPLSV 10 Unmodified _LDSEVKPLSV_ 0 0 0 REV__AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant REV__AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7889404296875 2 543.805697 1085.59684 NaN NaN NaN NaN NaN NaN NaN 160.66 1 160.66 160.16 161.16 0 0 0 0 2.8426 1 32263 32263 0.063865 0 1 + 25470 12987 16797 16803 25187 25187 0.05746575066336845 LDSLEQFPV 9 Unmodified _LDSLEQFPV_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6763305664062 2 524.27149 1046.52843 -0.51245 -0.00026866 -1.1724 -0.00061467 -1.6849 -0.00088333 524.2700949454534 45.046 0.2163 42.181 42.126 42.342 -2.8653 6 5 2 0 0 0 0.85111 1 8175 8175 3.5965 0 1 384130 25471 7388 16798 16804 25188 25188 0.007023304865015234 LDSNCFATQP 10 Unmodified _LDSNCFATQP_ 0 0 0 REV__ENSG00000102265|ENST00000218388|TIMP1 REV__ENSG00000102265|ENST00000218388|TIMP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7924194335938 2 548.242406 1094.47026 0.548 0.00030044 -3.4722 -0.0019036 -2.9242 -0.0016032 548.2393950390107 122.39 0.098564 117.7 117.65 117.75 -4.6873 4 2 2 0 0 0 0.871 1 23496 23496 6.2058 0 1 1162000 + 25472 14830 16799 16805 25189 25189 -0.073196744304596 LDSQVECVP 9 Carbamidomethyl (C) _LDSQVEC(Carbamidomethyl (C))VP_ LDSQVEC(1)VP LDSQVEC(52)VP 0 1 0 REV__nc|ENSG00000136141|Q9Y2L9-2|LRCH1 REV__nc|ENSG00000136141|Q9Y2L9-2|LRCH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6965942382812 2 523.744782 1045.47501 0.12094 6.3344E-05 0.010038 5.2576E-06 0.13098 6.8601E-05 523.7447497192526 40.991 0.67124 38.501 38.182 38.853 -2.4896 45 18 3 0 0 0 0.11032 1 7380 7380 52.268 6.5687 1 4791200 + 25473 16315 16800 16806 25190 25190 18 -0.04590790287670643 LDSQVECVP 9 Carbamidomethyl (C) _LDSQVEC(Carbamidomethyl (C))VP_ 0 1 0 REV__nc|ENSG00000136141|Q9Y2L9-2|LRCH1 REV__nc|ENSG00000136141|Q9Y2L9-2|LRCH1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.744782 1045.47501 0.29143 0.00015264 -0.13542 -7.0925E-05 0.15601 8.1711E-05 523.7447079618712 38.568 0.60376 38.568 38.32 38.924 0 0.036453 -0.00036966 NaN 52.268 43 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5171500 + 25474 16315 16800 16806 18 -0.04590790287670643 LDSQVECVP 9 Carbamidomethyl (C) _LDSQVEC(Carbamidomethyl (C))VP_ 0 1 0 REV__nc|ENSG00000136141|Q9Y2L9-2|LRCH1 REV__nc|ENSG00000136141|Q9Y2L9-2|LRCH1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.744782 1045.47501 -0.37665 -0.00019727 0.26318 0.00013784 -0.11346 -5.9427E-05 523.7449985566435 41.175 0.66268 38.54 38.185 38.847 -2.6348 0.0085865 4.7874E-05 NaN 52.268 53 18 4 NaN NaN NaN NaN 0 NaN NaN 0 7527800 + 25475 16315 16800 16806 18 -0.04590790287670643 LDSSQKKLY 9 Unmodified _LDSSQKKLY_ 0 0 0 ZNF14|p.N62Ifs*61|1|0.06|ENSG00000105708|chr19:19714097-19714097|T/-|frameshift_variant;ENSG00000105708|ENST00000344099|ZNF14 ZNF14|p.N62Ifs*61|1|0.06|ENSG00000105708|chr19:19714097-19714097|T/-|frameshift_variant ZNF14|p.N62Ifs*61|1|0.06|ENSG00000105708|chr19:19714097-19714097|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2797241210938 2 541.298039 1080.58152 0.29672 0.00016062 0.090074 4.8757E-05 0.3868 0.00020937 541.2979468172663 119.32 0.72601 119.32 118.89 119.62 0 32 20 2 0 0 0 0.48644 1 23480 23480 20.454 0.039092 1 3843600 25476 2335 16801 16807 25191 25191 0.04445708269145143 LDSVINDII 9 Unmodified _LDSVINDII_ 0 0 0 REV__ENST00000435741.1_1_Y:28772669-28772795:-|nuORF REV__ENST00000435741.1_1_Y:28772669-28772795:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 500.77593994140625 2 501.279315 1000.54408 -0.03364 -1.6863E-05 0.049403 2.4765E-05 0.015764 7.9021E-06 501.2793926153456 155.76 0.47198 150.48 150.11 150.58 -5.2854 22 12 2 0 0 0 0.20132 1 30206 30206 2.8827 1.9204 1 1224800 + 25477 19897 16802 16808 25192 25192 0.04382617003534506 LDSVINDII 9 Unmodified _LDSVINDII_ 0 0 0 REV__ENST00000435741.1_1_Y:28772669-28772795:-|nuORF REV__ENST00000435741.1_1_Y:28772669-28772795:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 501.279315 1000.54408 0.20137 0.00010094 -0.21755 -0.00010905 -0.016176 -8.1088E-06 501.27943640321973 150.4 0.41045 150.4 150.12 150.53 0 -0.014075 -0.00019228 NaN 2.8827 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1100900 + 25478 19897 16802 16808 0.04382617003534506 LDSVINDII 9 Unmodified _LDSVINDII_ 0 0 0 REV__ENST00000435741.1_1_Y:28772669-28772795:-|nuORF REV__ENST00000435741.1_1_Y:28772669-28772795:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 501.279315 1000.54408 0.13062 6.5478E-05 -0.0088567 -4.4397E-06 0.12177 6.1038E-05 501.78066466248566 155.15 0.2883 150.38 150.16 150.44 -4.7791 -0.04328 1.6942E-05 NaN 2.8827 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1450700 + 25479 19897 16802 16808 0.04382617003534506 LDTAQRNLY 9 Unmodified _LDTAQRNLY_ 0 0 0 ENST00000595094.1_1_19:20736613-20844252:-|nuORF;ZNF92|p.E338Kfs*24|1|0.12|ENSG00000146757|chr7:65399123-65399123|G/-|frameshift_variant;ENSG00000105750|ENST00000328178|ZNF85;nc|ENSG00000184635|P35789-2|ZNF93;ENSG00000146757|ENST00000328747|ZNF92;ENSG00000197372|ENST00000359788|ZNF675;nc|ENSG00000105750|Q03923-2|ZNF85;nc|ENSG00000146757|Q03936-3|ZNF92;ENSG00000237440|ENST00000427401|ZNF737;nc|ENSG00000184635|P35789-3|ZNF93;ENSG00000173041|ENST00000309683|ZNF680;ENSG00000188171|ENST00000601440|ZNF626;ZNF626|p.T498Wfs*8|1|0.06|ENSG00000188171|chr19:20624367-20624385|GTATGATTCTCTCATGTGT/-|frameshift_variant;ENSG00000256771|ENST00000589717|ZNF253;ZNF92|p.K339Nfs*23|1|0.66|ENSG00000146757|chr7:65399127-65399127|A/-|frameshift_variant;ZNF85|p.C347Mfs*6|1|0.33|ENSG00000105750|chr19:20949546-20949547|-/A|frameshift_variant;ZNF93|p.V32Gfs*3|1|0.05|ENSG00000184635|chr19:19915370-19915371|-/GTCCC|frameshift_variant;ZNF92|p.H331Tfs*2|1|0.13|ENSG00000146757|chr7:65399098-65399099|-/A|frameshift_variant;ZNF675|p.D249Ifs*28|1|0.37|ENSG00000197372|chr19:23654189-23654189|T/-|frameshift_variant;ZNF253|p.G115Afs*22|1|0.35|ENSG00000256771|chr19:19891583-19891583|A/-|frameshift_variant;nc|ENSG00000173041|Q8NEM1-2|ZNF680;ZNF626|p.G116Dfs*3|2|0.17|ENSG00000188171|chr19:20625532-20625532|T/-|frameshift_variant;ZNF253|p.G115Rfs*3|1|0.17|ENSG00000256771|chr19:19891582-19891583|-/A|frameshift_variant;nc|ENSG00000188171|Q68DY1-3|ZNF626;nc|ENSG00000105750|Q03923-3|ZNF85;ENST00000488849.1_1_7:64838847-64852976:+|nuORF;ENSG00000184635|ENST00000343769|ZNF93;ZNF92|p.H387Qfs*13|1|0.27|ENSG00000146757|chr7:65399274-65399275|AT/-|frameshift_variant ENST00000595094.1_1_19:20736613-20844252:-|nuORF;ZNF92|p.H387Qfs*13|1|0.27|ENSG00000146757|chr7:65399274-65399275|AT/-|frameshift_variant ENST00000595094.1_1_19:20736613-20844252:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7725830078125 2 547.285463 1092.55637 0.13072 7.1544E-05 -0.85218 -0.00046639 -0.72146 -0.00039484 547.2849948600375 58.923 0.46282 56.012 55.751 56.213 -2.9105 29 12 3 0 0 0 0.70212 1 11268 11268 27.629 15.989 1 2590100 25480 11657;26638 16803 16809 25193 25193 0.01379653466574382 LDTAQRNLY 9 Unmodified _LDTAQRNLY_ 0 0 0 ENST00000595094.1_1_19:20736613-20844252:-|nuORF;ZNF92|p.E338Kfs*24|1|0.12|ENSG00000146757|chr7:65399123-65399123|G/-|frameshift_variant;ENSG00000105750|ENST00000328178|ZNF85;nc|ENSG00000184635|P35789-2|ZNF93;ENSG00000146757|ENST00000328747|ZNF92;ENSG00000197372|ENST00000359788|ZNF675;nc|ENSG00000105750|Q03923-2|ZNF85;nc|ENSG00000146757|Q03936-3|ZNF92;ENSG00000237440|ENST00000427401|ZNF737;nc|ENSG00000184635|P35789-3|ZNF93;ENSG00000173041|ENST00000309683|ZNF680;ENSG00000188171|ENST00000601440|ZNF626;ZNF626|p.T498Wfs*8|1|0.06|ENSG00000188171|chr19:20624367-20624385|GTATGATTCTCTCATGTGT/-|frameshift_variant;ENSG00000256771|ENST00000589717|ZNF253;ZNF92|p.K339Nfs*23|1|0.66|ENSG00000146757|chr7:65399127-65399127|A/-|frameshift_variant;ZNF85|p.C347Mfs*6|1|0.33|ENSG00000105750|chr19:20949546-20949547|-/A|frameshift_variant;ZNF93|p.V32Gfs*3|1|0.05|ENSG00000184635|chr19:19915370-19915371|-/GTCCC|frameshift_variant;ZNF92|p.H331Tfs*2|1|0.13|ENSG00000146757|chr7:65399098-65399099|-/A|frameshift_variant;ZNF675|p.D249Ifs*28|1|0.37|ENSG00000197372|chr19:23654189-23654189|T/-|frameshift_variant;ZNF253|p.G115Afs*22|1|0.35|ENSG00000256771|chr19:19891583-19891583|A/-|frameshift_variant;nc|ENSG00000173041|Q8NEM1-2|ZNF680;ZNF626|p.G116Dfs*3|2|0.17|ENSG00000188171|chr19:20625532-20625532|T/-|frameshift_variant;ZNF253|p.G115Rfs*3|1|0.17|ENSG00000256771|chr19:19891582-19891583|-/A|frameshift_variant;nc|ENSG00000188171|Q68DY1-3|ZNF626;nc|ENSG00000105750|Q03923-3|ZNF85;ENST00000488849.1_1_7:64838847-64852976:+|nuORF;ENSG00000184635|ENST00000343769|ZNF93;ZNF92|p.H387Qfs*13|1|0.27|ENSG00000146757|chr7:65399274-65399275|AT/-|frameshift_variant ENST00000595094.1_1_19:20736613-20844252:-|nuORF;ZNF92|p.H387Qfs*13|1|0.27|ENSG00000146757|chr7:65399274-65399275|AT/-|frameshift_variant ENST00000595094.1_1_19:20736613-20844252:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77294921875 2 547.285463 1092.55637 0.10831 5.9277E-05 -0.89273 -0.00048858 -0.78442 -0.0004293 547.2848098579692 59.294 0.64128 55.981 55.671 56.312 -3.3139 34 17 3 0 0 0 0.74655 1 11017 11017 15.847 1.9411 1 1787500 25481 11657;26638 16803 16809 25194 25194 0.01379653466574382 LDTAQRNLY 9 Unmodified _LDTAQRNLY_ 0 0 0 ENST00000595094.1_1_19:20736613-20844252:-|nuORF;ZNF92|p.E338Kfs*24|1|0.12|ENSG00000146757|chr7:65399123-65399123|G/-|frameshift_variant;ENSG00000105750|ENST00000328178|ZNF85;nc|ENSG00000184635|P35789-2|ZNF93;ENSG00000146757|ENST00000328747|ZNF92;ENSG00000197372|ENST00000359788|ZNF675;nc|ENSG00000105750|Q03923-2|ZNF85;nc|ENSG00000146757|Q03936-3|ZNF92;ENSG00000237440|ENST00000427401|ZNF737;nc|ENSG00000184635|P35789-3|ZNF93;ENSG00000173041|ENST00000309683|ZNF680;ENSG00000188171|ENST00000601440|ZNF626;ZNF626|p.T498Wfs*8|1|0.06|ENSG00000188171|chr19:20624367-20624385|GTATGATTCTCTCATGTGT/-|frameshift_variant;ENSG00000256771|ENST00000589717|ZNF253;ZNF92|p.K339Nfs*23|1|0.66|ENSG00000146757|chr7:65399127-65399127|A/-|frameshift_variant;ZNF85|p.C347Mfs*6|1|0.33|ENSG00000105750|chr19:20949546-20949547|-/A|frameshift_variant;ZNF93|p.V32Gfs*3|1|0.05|ENSG00000184635|chr19:19915370-19915371|-/GTCCC|frameshift_variant;ZNF92|p.H331Tfs*2|1|0.13|ENSG00000146757|chr7:65399098-65399099|-/A|frameshift_variant;ZNF675|p.D249Ifs*28|1|0.37|ENSG00000197372|chr19:23654189-23654189|T/-|frameshift_variant;ZNF253|p.G115Afs*22|1|0.35|ENSG00000256771|chr19:19891583-19891583|A/-|frameshift_variant;nc|ENSG00000173041|Q8NEM1-2|ZNF680;ZNF626|p.G116Dfs*3|2|0.17|ENSG00000188171|chr19:20625532-20625532|T/-|frameshift_variant;ZNF253|p.G115Rfs*3|1|0.17|ENSG00000256771|chr19:19891582-19891583|-/A|frameshift_variant;nc|ENSG00000188171|Q68DY1-3|ZNF626;nc|ENSG00000105750|Q03923-3|ZNF85;ENST00000488849.1_1_7:64838847-64852976:+|nuORF;ENSG00000184635|ENST00000343769|ZNF93;ZNF92|p.H387Qfs*13|1|0.27|ENSG00000146757|chr7:65399274-65399275|AT/-|frameshift_variant ENST00000595094.1_1_19:20736613-20844252:-|nuORF;ZNF92|p.H387Qfs*13|1|0.27|ENSG00000146757|chr7:65399274-65399275|AT/-|frameshift_variant ENST00000595094.1_1_19:20736613-20844252:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7885131835938 2 547.285463 1092.55637 0.19445 0.00010642 -0.68635 -0.00037563 -0.49189 -0.00026921 547.2850144617096 59.357 0.5178 56.134 55.843 56.361 -3.2237 28 14 2 0 0 0 0.42844 1 11047 11047 24.021 1.2843 1 2372700 25482 11657;26638 16803 16809 25195 25195 0.01379653466574382 LDTASLMSLFY 11 Unmodified _LDTASLMSLFY_ 0 0 0 REV__nc|ENSG00000176925|Q8NH61|OR51F2 REV__nc|ENSG00000176925|Q8NH61|OR51F2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7538452148438 2 630.812664 1259.61078 NaN NaN NaN NaN NaN NaN NaN 106.39 1 102.29 101.79 102.79 -4.0913 0 0 0 0.22501 1 20457 20457 12.241 2.1667 1 + 25483 18526 16804 16810 25196 25196 -0.008645154968917268 LDTEELPV 8 Unmodified _LDTEELPV_ 0 0 0 REV__ENST00000591500.1_1_17:74068122-74075645:+|nuORF REV__ENST00000591500.1_1_17:74068122-74075645:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2406005859375 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 99.854 1 95.865 95.365 96.365 -3.9895 0 0 0 0.21323 1 19175 19175 14.582 1.0738 1 + 25484 23339 16805 16811 25197 25197 -0.0009733381322121204 LDTFLAQAV 9 Unmodified _LDTFLAQAV_ 0 0 0 ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27178955078125 2 489.26875 976.522947 0.20669 0.00010113 -0.027649 -1.3528E-05 0.17904 8.7598E-05 489.2686860888107 111.1 1.3994 111.1 110.47 111.87 0 125 39 5 0 0 0 0.42844 1 21782 21782 24.021 2.2739 1 77276000 25485 6889 16806 16812 25198 25198 0.03374651694662134 LDTGEFLNAS 10 Unmodified _LDTGEFLNAS_ 0 0 0 REV__PLA1A|p.N135Mfs*2|1|0.33|ENSG00000144837|chr3:119608894-119608894|A/-|frameshift_variant REV__PLA1A|p.N135Mfs*2|1|0.33|ENSG00000144837|chr3:119608894-119608894|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2822875976562 2 533.756204 1065.49785 -0.034132 -1.8218E-05 -1.3779 -0.00073547 -1.412 -0.00075369 533.7555798716585 57.431 0.67342 54.536 54.132 54.806 -2.8944 22 18 2 0 0 0 0.75233 1 10961 10961 12.241 6.5088 1 1097000 + 25486 16807 16807 16813 25199 25199 -0.03227447898552782 LDTGLVPSL 9 Unmodified _LDTGLVPSL_ 0 0 0 ENST00000256474.2_1_3:10191645-10191768:+|nuORF ENST00000256474.2_1_3:10191645-10191768:+|nuORF ENST00000256474.2_1_3:10191645-10191768:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.239990234375 2 457.7633 913.512048 0.38129 0.00017454 -0.4602 -0.00021066 -0.078909 -3.6122E-05 457.76321487442596 154.18 0.48141 148.96 148.76 149.25 -5.2209 17 13 2 0 0 0 0.46541 1 29892 29892 21.747 2.3076 1 581250 25487 8257 16808 16814 25200 25200 0.05183249320384675 LDTGRPSTTV 10 Unmodified _LDTGRPSTTV_ 0 0 0 ENSG00000134760|ENST00000257192|DSG1 ENSG00000134760|ENST00000257192|DSG1 ENSG00000134760|ENST00000257192|DSG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6982421875 2 523.77747 1045.54039 NaN NaN NaN NaN NaN NaN NaN 16.746 1 16.746 16.246 17.246 0 0 0 0 0.22588 1 2616 2616 7.609 1.4032 1 25488 3873 16809 16815 25201 25201 0.019439472296653548 LDTHIFAV 8 Unmodified _LDTHIFAV_ 0 0 0 REV__nc|ENSG00000099904|Q9ULC8-2|ZDHHC8 REV__nc|ENSG00000099904|Q9ULC8-2|ZDHHC8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2385559082031 2 458.25036 914.486168 NaN NaN NaN NaN NaN NaN NaN 111.9 1 107.68 107.18 108.18 -4.2289 0 0 0 0.19492 1 21542 21542 26.341 2.1313 1 + 25489 14646 16810 16816 25202 25202 0.025503998687554486 LDTIGNEGLI 10 Unmodified _LDTIGNEGLI_ 0 0 0 REV__ENSG00000166800|ENST00000280706|LDHAL6A REV__ENSG00000166800|ENST00000280706|LDHAL6A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2708129882812 2 522.782222 1043.54989 0.38322 0.00020034 -0.33692 -0.00017613 0.046303 2.4207E-05 522.78198477864 74.624 0.59386 71.03 70.676 71.269 -3.594 24 16 2 0 0 0 0.84217 1 14169 14169 15.248 1.3424 1 3923900 + 25490 17871 16811 16817 25203 25203 0.029857155152058112 LDTLLHCT 8 Unmodified _LDTLLHCT_ 0 0 0 REV__CDK12|p.R663C|2|0.32|ENSG00000167258|chr17:39490612-39490612|C/T|missense_variant REV__CDK12|p.R663C|2|0.32|ENSG00000167258|chr17:39490612-39490612|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.239013671875 2 458.233853 914.453153 -0.13044 -5.977E-05 0.37924 0.00017378 0.2488 0.00011401 458.23402448758753 84.813 0.89639 81.149 80.71 81.606 -3.6641 60 25 3 0 0 0 0.73426 1 16502 16502 9.3474 0 1 12788000 + 25491 13352 16812 16818 25204 25204 -0.0074955024559812955 LDTMCCSF 8 Unmodified _LDTMCCSF_ 0 0 0 REV__ENST00000316715.8_1_X:13789363-13789450:-|nuORF REV__ENST00000316715.8_1_X:13789363-13789450:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2341003417969 2 460.171549 918.328546 -0.073276 -3.372E-05 0.21625 9.9511E-05 0.14297 6.5791E-05 460.17157691682775 101.76 1.567 97.571 96.987 98.554 -4.1861 83 44 3 0 0 0 0.74718 1 20095 20095 18.135 6.4947 1 3967000 + 25492 20526 16813 16819 25205 25205 -0.13388507048796328 LDTMCCSF 8 Unmodified _LDTMCCSF_ 0 0 0 REV__ENST00000316715.8_1_X:13789363-13789450:-|nuORF REV__ENST00000316715.8_1_X:13789363-13789450:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22772216796875 2 460.171549 918.328546 0.27246 0.00012538 0.054219 2.495E-05 0.32668 0.00015033 460.1715294568283 101.96 1.4859 97.635 97.118 98.604 -4.3208 79 42 2 0 0 0 0.93477 1 19654 19654 7.9102 2.6795 1 4870900 + 25493 20526 16813 16819 25206 25206 -0.13388507048796328 LDTNPSKV 8 Unmodified _LDTNPSKV_ 0 0 0 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23590087890625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 67.951 1 64.624 64.124 65.124 -3.3268 0 0 0 0.21486 1 12821 12821 11.64 3.047 1 25494 4191 16814 16820 25207 25207 0.019015056264720442 LDTPGVMPV 9 Unmodified _LDTPGVMPV_ 0 0 0 REV__NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant REV__NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16497802734375 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 97.908 1 93.811 93.311 94.311 -4.0978 0 0 0 0.23508 1 19220 19220 2.7352 1.0826 1 + 25495 19234 16815 16821 25208 25208 0.006916204142157767 LDTPGVMPV 9 Unmodified _LDTPGVMPV_ 0 0 0 REV__NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant REV__NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649475097656 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 130.98 1 126.14 125.64 126.64 -4.8355 0 0 0 0.23508 1 25148 25148 1.1933 0.12188 1 + 25496 19234 16815 16821 25209 25209 0.006916204142157767 LDTPNLKFLKV 11 Unmodified _LDTPNLKFLKV_ 0 0 0 tr|U7SSP0|U7SSP0_FUSNUNudixhydrolasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01331PE=4SV=1 tr|U7SSP0|U7SSP0_FUSNUNudixhydrolasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01331PE=4SV=1 tr|U7SSP0|U7SSP0_FUSNUNudixhydrolasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01331PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 644.3612060546875 2 644.387188 1286.75982 0.42899 0.00027643 -0.58825 -0.00037906 -0.15926 -0.00010263 644.3877209184018 166.67 0.13739 161.69 161.6 161.74 -4.9786 5 3 2 0 0 0 0.92792 1 32682 32682 8.7454 0.58988 1 8419800 25497 26110 16816 16822 25210 25210 0.1279137818817162 LDTQPKKV 8 Unmodified _LDTQPKKV_ 0 0 0 TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;TCF3|p.Q361Rfs*33|1|0.44|ENSG00000071564|chr19:1620980-1620980|G/-|frameshift_variant TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24786376953125 2 464.776742 927.538931 0.40914 0.00019016 -0.76756 -0.00035675 -0.35843 -0.00016659 464.7763432286496 21.448 0.24913 19.973 19.876 20.125 -1.4742 9 6 2 0 0 0 0.99312 1 3616 3616 14.838 3.198 1 505360 25498 1451 16817 16823 25211 25211 0.07226357931563143 LDTQPKKV 8 Unmodified _LDTQPKKV_ 0 0 0 TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;TCF3|p.Q361Rfs*33|1|0.44|ENSG00000071564|chr19:1620980-1620980|G/-|frameshift_variant TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2539978027344 2 464.776742 927.538931 -0.22594 -0.00010501 -0.0090833 -4.2217E-06 -0.23502 -0.00010923 464.7767314018622 21.379 0.31483 19.995 19.793 20.108 -1.3847 11 8 2 0 0 0 8448 1 3376 3376 3.2813 0 1 506810 25499 1451 16817 16823 25212 25212 0.07226357931563143 LDTQPKKV 8 Unmodified _LDTQPKKV_ 0 0 0 TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;TCF3|p.Q361Rfs*33|1|0.44|ENSG00000071564|chr19:1620980-1620980|G/-|frameshift_variant TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.776742 927.538931 -0.6781 -0.00031517 -0.14696 -6.8301E-05 -0.82506 -0.00038347 464.7768581551263 21.714 0.27116 19.993 19.815 20.087 -1.7211 0.006114 0.00024504 NaN 14.838 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 319070 25500 1451 16817 16823 0.07226357931563143 LDTRRALLL 9 Unmodified _LDTRRALLL_ 0 0 0 REV__ENSG00000070018|ENST00000261349|LRP6;REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__ENSG00000070018|ENST00000261349|LRP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.56085205078125 3 357.560869 1069.66078 0.19058 6.8145E-05 -0.030244 -1.0814E-05 0.16034 5.7331E-05 357.5606822573829 79.621 0.38237 79.621 79.34 79.722 0 14 10 2 0 0 0 0.60489 1 15510 15510 0.0033805 0 1 772760 + 25501 14247;17487 16818 16824 25213 25213 0.1287340001395023 LDTSPTLQS 9 Unmodified _LDTSPTLQS_ 0 0 0 ENSG00000143061|ENST00000369486|IGSF3;nc|ENSG00000143061|O75054-2|IGSF3 ENSG00000143061|ENST00000369486|IGSF3 ENSG00000143061|ENST00000369486|IGSF3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24517822265625 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 97.429 1 97.429 96.929 97.929 0 0 0 0 0.19674 1 19093 19093 0.12781 0 1 25502 4451 16819 16825 25214 25214 -0.005428329272717747 LDTSRPKY 8 Unmodified _LDTSRPKY_ 0 0 0 REV__ENSG00000196131|ENST00000341702|VN1R2 REV__ENSG00000196131|ENST00000341702|VN1R2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26348876953125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 61.232 1 57.992 57.492 58.492 -3.2395 0 0 0 0.20761 1 11460 11460 19.257 1.1106 1 + 25503 19219 16820 16826 25215 25215 0.023328834091330464 LDTVIEKYN 9 Unmodified _LDTVIEKYN_ 0 0 0 REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1 REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.775634765625 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 161.53 1 156.34 155.84 156.84 -5.1878 0 0 0 0.23508 1 31349 31349 10.824 2.9138 1 + 25504 25151 16821 16827 25216 25216 0.022500020322468117 LDTVTITINY 10 Unmodified _LDTVTITINY_ 0 0 0 REV__ENSG00000113211|ENST00000231136|PCDHB6;REV__PCDHB7|p.A540Rfs*2|1|0.1|ENSG00000113212|chr5:141174448-141174448|C/-|frameshift_variant;REV__nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;REV__ENSG00000177839|ENST00000316105|PCDHB9;REV__ENSG00000187372|ENST00000341948|PCDHB13 REV__ENSG00000113211|ENST00000231136|PCDHB6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3115844726562 2 576.810979 1151.6074 0.053686 3.0967E-05 0.70129 0.00040451 0.75498 0.00043548 576.811022372202 138.43 0.21082 133.79 133.74 133.95 -4.6413 6 5 2 0 0 0 0.871 1 27335 27335 10.074 0 1 1559100 + 25505 15328;15329;15618;18578;19086 16822 16828 25217 25217 0.037665577207462775 LDTYLKKNK 9 Unmodified _LDTYLKKNK_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2157897949219 3 374.888763 1121.64446 0.76539 0.00028694 -0.91836 -0.00034428 -0.15297 -5.7347E-05 374.88828307708144 24.487 0.37711 22.838 22.683 23.06 -1.6482 23 10 3 0 0 0 0.72996 1 4300 4300 4.897 0.36815 1 1131300 25506 1879 16823 16829 25218 25218 0.08850274057181196 LDVCTLFLLSH 11 Unmodified _LDVCTLFLLSH_ 0 0 0 ENST00000498250.1_1_3:37369266-37370614:+|nuORF ENST00000498250.1_1_3:37369266-37370614:+|nuORF ENST00000498250.1_1_3:37369266-37370614:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7652587890625 2 630.836474 1259.65839 NaN NaN NaN NaN NaN NaN NaN 122.15 1 117.6 117.1 118.1 -4.5476 0 0 0 0.22943 1 24078 24078 8.7454 0 1 25507 10600 16824 16830 25219 25219 0.03895183493978038 LDVDLHTC 8 Unmodified _LDVDLHTC_ 0 0 0 REV__ENST00000466462.5_1_10:92635852-92660362:+|nuORF REV__ENST00000466462.5_1_10:92635852-92660362:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2388610839844 2 458.21566 914.416767 NaN NaN NaN NaN NaN NaN NaN 98.065 1 93.796 93.296 94.296 -4.2692 0 0 0 0.21452 1 18739 18739 13.508 0 1 + 25508 16985 16825 16831 25220 25220 -0.04386427142310367 LDVGSISPQ 9 Unmodified _LDVGSISPQ_ 0 0 0 REV__ENSG00000079689|ENST00000377961|SCGN REV__ENSG00000079689|ENST00000377961|SCGN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2408752441406 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 116.53 1 112.17 111.67 112.67 -4.3585 0 0 0 0.1761 1 22433 22433 26.884 1.4843 1 + 25509 14400 16826 16832 25221 25221 0.010254882809135779 LDVIKHQNQ 9 Unmodified _LDVIKHQNQ_ 0 0 0 REV__nc|ENSG00000215695|Q92681|RSC1A1 REV__nc|ENSG00000215695|Q92681|RSC1A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7854614257812 2 547.80128 1093.58801 0.19082 0.00010453 -0.22586 -0.00012373 -0.035045 -1.9198E-05 548.3036888365274 134.82 0.14191 130.18 130.09 130.23 -4.6399 5 3 2 0 0 0 0.81703 1 26589 26589 10.074 0 1 830620 + 25510 24271 16827 16833 25222 25222 0.04495646220493654 LDVLFPLV 8 Unmodified _LDVLFPLV_ 0 0 0 nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1 nc|ENSG00000136731|Q9NYU2-2|UGGT1 nc|ENSG00000136731|Q9NYU2-2|UGGT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.236572265625 2 458.281129 914.547705 NaN NaN NaN NaN NaN NaN NaN 148.32 1 143.16 142.66 143.66 -5.1557 0 0 0 0.23782 1 28711 28711 0.68139 0 1 25511 4034 16828 16834 25223 25223 0.08701331568045134 LDVLMFHFG 9 Unmodified _LDVLMFHFG_ 0 0 0 REV__nc|ENSG00000196470|Q8IUQ4-3|SIAH1 REV__nc|ENSG00000196470|Q8IUQ4-3|SIAH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2037353515625 3 360.184522 1077.53174 NaN NaN NaN NaN NaN NaN NaN 40.303 1 37.669 37.169 38.169 -2.6348 0 0 0 0.23508 1 7507 7507 5.2969 1.7004 1 + 25512 24225 16829 16835 25224 25224 -0.003926979405150632 LDVQYTQGY 9 Unmodified _LDVQYTQGY_ 0 0 0 REV__NEDD4L|p.F782Y|1|0.33|ENSG00000049759|chr18:58373262-58373262|T/A|missense_variant REV__NEDD4L|p.F782Y|1|0.33|ENSG00000049759|chr18:58373262-58373262|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7932739257812 2 543.758746 1085.50294 NaN NaN NaN NaN NaN NaN NaN 126.27 1 121.48 120.98 121.98 -4.7958 0 0 0 0.23508 1 24236 24236 8.5933 1.304 1 + 25513 24352 16830 16836 25225 25225 -0.03639144035946629 LDVRLSPNY 9 Unmodified _LDVRLSPNY_ 0 0 0 CA8|p.S64L|1|0.36|ENSG00000178538|chr8:60279790-60279790|G/A|missense_variant;ENST00000529918.1_1_8:61178441-61193874:-|nuORF;ENSG00000178538|ENST00000317995|CA8 CA8|p.S64L|1|0.36|ENSG00000178538|chr8:60279790-60279790|G/A|missense_variant CA8|p.S64L|1|0.36|ENSG00000178538|chr8:60279790-60279790|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2652587890625 2 538.790381 1075.56621 0.077001 4.1487E-05 -0.027858 -1.501E-05 0.049143 2.6478E-05 538.7904377282421 114 1.3363 109.52 108.99 110.33 -4.4726 182 37 7 0 0 0 0.38188 1 22517 22517 26.884 1.4843 1 580990000 25514 357 16831 16837 25226 25226 0.03144841471953441 LDVRLSPNY 9 Unmodified _LDVRLSPNY_ 0 0 0 CA8|p.S64L|1|0.36|ENSG00000178538|chr8:60279790-60279790|G/A|missense_variant;ENST00000529918.1_1_8:61178441-61193874:-|nuORF;ENSG00000178538|ENST00000317995|CA8 CA8|p.S64L|1|0.36|ENSG00000178538|chr8:60279790-60279790|G/A|missense_variant CA8|p.S64L|1|0.36|ENSG00000178538|chr8:60279790-60279790|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2833862304688 2 538.790381 1075.56621 0.62767 0.00033818 -0.48337 -0.00026043 0.14431 7.7751E-05 538.7901925450477 113.77 1.4325 109.5 108.99 110.42 -4.2725 210 40 7 0 0 0 0.35443 2 21987 21969;21987 28.487 1.6032 1 571110000 25515 357 16831 16837 25227;25228 25228 0.03144841471953441 LDVRLSPNY 9 Unmodified _LDVRLSPNY_ 0 0 0 CA8|p.S64L|1|0.36|ENSG00000178538|chr8:60279790-60279790|G/A|missense_variant;ENST00000529918.1_1_8:61178441-61193874:-|nuORF;ENSG00000178538|ENST00000317995|CA8 CA8|p.S64L|1|0.36|ENSG00000178538|chr8:60279790-60279790|G/A|missense_variant CA8|p.S64L|1|0.36|ENSG00000178538|chr8:60279790-60279790|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 538.790381 1075.56621 0.32894 0.00017723 -0.14421 -7.77E-05 0.18473 9.9532E-05 538.7902688875331 109.54 1.624 109.54 109.02 110.64 0 0.034846 8.9428E-05 NaN 28.487 171 46 5 NaN NaN NaN NaN 0 NaN NaN 0 473890000 25516 357 16831 16837 0.03144841471953441 LDVRLSPNY 9 Unmodified _LDVRLSPNY_ 0 0 0 CA8|p.S64L|1|0.36|ENSG00000178538|chr8:60279790-60279790|G/A|missense_variant;ENST00000529918.1_1_8:61178441-61193874:-|nuORF;ENSG00000178538|ENST00000317995|CA8 CA8|p.S64L|1|0.36|ENSG00000178538|chr8:60279790-60279790|G/A|missense_variant CA8|p.S64L|1|0.36|ENSG00000178538|chr8:60279790-60279790|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 538.790381 1075.56621 0.27737 0.00014945 -0.16411 -8.8421E-05 0.11326 6.1025E-05 538.7903480455592 114.02 1.3312 109.47 109 110.33 -4.555 -0.039437 6.7988E-05 NaN 28.487 186 37 7 NaN NaN NaN NaN 0 NaN NaN 0 542970000 25517 357 16831 16837 0.03144841471953441 LDVRYHEY 8 Unmodified _LDVRYHEY_ 0 0 0 REV__tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1 REV__tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7876586914062 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 120.29 1 120.29 119.79 120.79 0 0 0 0 0.21486 1 23712 23712 8.5933 0.68312 1 + 25518 24957 16832 16838 25229 25229 -0.023760180791896346 LDVRYHEY 8 Unmodified _LDVRYHEY_ 0 0 0 REV__tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1 REV__tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.76708984375 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 129.84 1 129.84 129.34 130.34 0 0 0 0 0.21452 1 25653 25653 13.508 0.97634 1 + 25519 24957 16832 16838 25230 25230 -0.023760180791896346 LDVWRRQN 8 Unmodified _LDVWRRQN_ 0 0 0 REV__PTPN21|p.I849Lfs*9|1|0.43|ENSG00000070778|chr14:88473769-88473769|T/-|frameshift_variant REV__PTPN21|p.I849Lfs*9|1|0.43|ENSG00000070778|chr14:88473769-88473769|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7953491210938 2 543.793789 1085.57303 NaN NaN NaN NaN NaN NaN NaN 134.7 1 130.06 129.56 130.56 -4.6399 0 0 0 0.21452 1 26564 26564 13.508 2.684 1 + 25520 14266 16833 16839 25231 25231 0.03366199143192716 LDWKKKRKLEK 11 Unmodified _LDWKKKRKLEK_ 0 0 0 REV__nc|ENSG00000150337|P12314-2|FCGR1A REV__nc|ENSG00000150337|P12314-2|FCGR1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 736.5032958984375 2 736.45901 1470.90347 NaN NaN NaN NaN NaN NaN NaN 164.33 1 159.55 159.05 160.05 -4.7898 0 0 0 0.23698 1 32835 32835 1.3295 0.92882 1 + 25521 17027 16834 16840 25232 25232 0.18685225019135032 LDWVKEEAP 9 Unmodified _LDWVKEEAP_ 0 0 0 ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1 ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENST00000557159.5_1_14:20924026-20925664:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7734985351562 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 126.99 1 122.38 121.88 122.88 -4.6172 0 0 0 0.23508 1 25042 25042 11.64 0 1 25522 2016 16835 16841 25233 25233 -2.2671392343909247E-05 LDYDYLQN 8 Unmodified _LDYDYLQN_ 0 0 0 ENSG00000140937|ENST00000268603|CDH11;ENST00000394156.7_2_16:64981508-64982584:-|nuORF ENSG00000140937|ENST00000268603|CDH11 ENSG00000140937|ENST00000268603|CDH11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2719116210938 2 522.237647 1042.46074 -0.21669 -0.00011316 -0.30761 -0.00016065 -0.5243 -0.00027381 522.2372429487033 93.672 0.61928 89.681 89.243 89.862 -3.9907 24 17 2 0 0 0 0.60622 1 18317 18317 21.747 3.6117 1 1305100 25523 4332 16836 16842 25234 25234 -0.05879119444330172 LDYLHGRG 8 Unmodified _LDYLHGRG_ 0 0 0 REV__SFSWAP|p.H81Y|1|0.24|ENSG00000061936|chr12:131714093-131714093|C/T|missense_variant REV__SFSWAP|p.H81Y|1|0.24|ENSG00000061936|chr12:131714093-131714093|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.83306884765625 3 310.831248 929.471915 0.28292 8.7939E-05 -0.56032 -0.00017416 -0.2774 -8.6226E-05 310.83103810016695 28.476 0.58895 26.721 26.461 27.05 -1.7552 41 16 4 0 0 0 8448 1 4813 4813 3.5871 0.95582 1 3974800 + 25524 24609 16837 16843 25235 25235 0.004357474404855566 LDYLHGRG 8 Unmodified _LDYLHGRG_ 0 0 0 REV__SFSWAP|p.H81Y|1|0.24|ENSG00000061936|chr12:131714093-131714093|C/T|missense_variant REV__SFSWAP|p.H81Y|1|0.24|ENSG00000061936|chr12:131714093-131714093|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 310.831248 929.471915 0.46368 0.00014413 -0.69589 -0.00021631 -0.23221 -7.2178E-05 310.8309729861314 28.701 0.51316 26.745 26.468 26.981 -1.9561 0.019559 -0.00028761 NaN 3.5871 41 14 4 NaN NaN NaN NaN 0 NaN NaN 0 4023600 + 25525 24609 16837 16843 0.004357474404855566 LDYLHGRG 8 Unmodified _LDYLHGRG_ 0 0 0 REV__SFSWAP|p.H81Y|1|0.24|ENSG00000061936|chr12:131714093-131714093|C/T|missense_variant REV__SFSWAP|p.H81Y|1|0.24|ENSG00000061936|chr12:131714093-131714093|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 310.831248 929.471915 0.28292 8.7939E-05 -0.56032 -0.00017416 -0.2774 -8.6226E-05 310.83103810016695 28.476 0.58895 26.721 26.461 27.05 -1.7552 -0.0044806 -0.00016119 NaN 3.5871 41 16 4 NaN NaN NaN NaN 0 NaN NaN 0 3974800 + 25526 24609 16837 16843 0.004357474404855566 LDYLHGRG 8 Unmodified _LDYLHGRG_ 0 0 0 REV__SFSWAP|p.H81Y|1|0.24|ENSG00000061936|chr12:131714093-131714093|C/T|missense_variant REV__SFSWAP|p.H81Y|1|0.24|ENSG00000061936|chr12:131714093-131714093|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 310.831248 929.471915 -0.32619 -0.00010139 0.1126 3.5001E-05 -0.21359 -6.6389E-05 310.8312441724281 28.707 0.59017 26.71 26.381 26.971 -1.9962 -0.015079 0.00046631 NaN 3.5871 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3942900 + 25527 24609 16837 16843 0.004357474404855566 LDYLNHDWK 9 Unmodified _LDYLNHDWK_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2972412109375 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 171.49 1 166.7 166.2 167.2 -4.7898 0 0 0 0.23508 1 34871 34871 10.074 2.1638 1 25528 12546 16838 16844 25236 25236 -0.021160600163966592 LDYLQQEVPR 10 Unmodified _LDYLQQEVPR_ 0 0 0 PLB1|p.V570Sfs*6|1|0.39|ENSG00000163803|chr2:28582474-28582474|A/-|frameshift_variant;nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1 PLB1|p.V570Sfs*6|1|0.39|ENSG00000163803|chr2:28582474-28582474|A/-|frameshift_variant PLB1|p.V570Sfs*6|1|0.39|ENSG00000163803|chr2:28582474-28582474|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.766357421875 2 630.832777 1259.651 0.56293 0.00035511 -0.83644 -0.00052766 -0.27352 -0.00017254 630.8320805017269 40.443 0.36238 40.443 40.136 40.499 0 13 9 2 0 0 0 0.51405 1 7519 7519 3.8763 0.80407 1 1257700 25529 5465 16839 16845 25237 25237 0.031561672178895606 LDYLQQEVPR 10 Unmodified _LDYLQQEVPR_ 0 0 0 PLB1|p.V570Sfs*6|1|0.39|ENSG00000163803|chr2:28582474-28582474|A/-|frameshift_variant;nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1 PLB1|p.V570Sfs*6|1|0.39|ENSG00000163803|chr2:28582474-28582474|A/-|frameshift_variant PLB1|p.V570Sfs*6|1|0.39|ENSG00000163803|chr2:28582474-28582474|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 630.832777 1259.651 0.847 0.00053431 -0.29541 -0.00018635 0.55159 0.00034796 630.8324331516666 43.144 0.54232 40.425 40.231 40.774 -2.7191 -0.0092245 0.0001723 NaN 3.8763 16 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2928900 25530 5465 16839 16845 0.031561672178895606 LDYSIYELH 9 Unmodified _LDYSIYELH_ 0 0 0 REV__ENST00000366857.9_1_1:224548243-224563520:+|nuORF REV__ENST00000366857.9_1_1:224548243-224563520:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3351440429688 2 576.782222 1151.54989 0.14981 8.641E-05 0.63085 0.00036386 0.78067 0.00045027 576.782412033396 112.94 0.918 108.41 108.07 108.99 -4.5259 34 25 2 0 0 0 0.54076 1 21774 21774 34.102 8.7031 1 2059700 + 25531 20905 16840 16846 25238 25238 -0.019822844848022214 LDYYTKPQ 8 Unmodified _LDYYTKPQ_ 0 0 0 ENSG00000106524|ENST00000306999|ANKMY2 ENSG00000106524|ENST00000306999|ANKMY2 ENSG00000106524|ENST00000306999|ANKMY2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.2231140136719 3 343.17468 1026.50221 NaN NaN NaN NaN NaN NaN NaN 62.913 1 59.656 59.156 60.156 -3.2567 0 0 0 0.21486 1 11800 11800 3.9444 0.3479 1 25532 2389 16841 16847 25239 25239 -0.009979386850091032 LEAEIATY 8 Unmodified _LEAEIATY_ 0 0 0 ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENSG00000111057|ENST00000388835|KRT18 ENST00000549078.5_1_12:53344429-53346127:+|nuORF ENST00000549078.5_1_12:53344429-53346127:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.3945922851562 1 909.45639 908.449113 0.20735 0.00018857 0.18374 0.00016711 0.39109 0.00035568 909.4564724183767 93.703 1.1055 89.712 89.278 90.384 -3.9907 103 31 5 0 0 0 0.039878 1 18426 18426 101.72 48.146 1 151790000 25533 2602 16842 16848 25240 25240 -0.008773164676540546 LEAEIATY 8 Unmodified _LEAEIATY_ 0 0 0 ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENSG00000111057|ENST00000388835|KRT18 ENST00000549078.5_1_12:53344429-53346127:+|nuORF ENST00000549078.5_1_12:53344429-53346127:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 909.45639 908.449113 0.38655 0.00035155 0.18296 0.00016639 0.56951 0.00051794 909.4564857205334 89.616 1.1565 89.616 89.139 90.295 0 -0.096788 6.1704E-05 NaN 101.72 92 32 4 NaN NaN NaN NaN 0 NaN NaN 0 140420000 25534 2602 16842 16848 -0.008773164676540546 LEAEIATY 8 Unmodified _LEAEIATY_ 0 0 0 ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENSG00000111057|ENST00000388835|KRT18 ENST00000549078.5_1_12:53344429-53346127:+|nuORF ENST00000549078.5_1_12:53344429-53346127:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 909.45639 908.449113 0.44189 0.00040188 -0.046966 -4.2713E-05 0.39493 0.00035917 909.456270139212 93.9 1.1406 89.757 89.345 90.486 -4.1435 0.043765 -0.0001474 NaN 101.72 92 32 4 NaN NaN NaN NaN 0 NaN NaN 0 125690000 25535 2602 16842 16848 -0.008773164676540546 LEAEIATY 8 Unmodified _LEAEIATY_ 0 0 0 ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENSG00000111057|ENST00000388835|KRT18 ENST00000549078.5_1_12:53344429-53346127:+|nuORF ENST00000549078.5_1_12:53344429-53346127:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 909.45639 908.449113 0.19907 0.00018104 0.1093 9.9402E-05 0.30837 0.00028044 909.4563703611059 93.611 1.172 89.767 89.33 90.502 -3.844 0.053967 -5.2852E-06 NaN 101.72 105 33 5 NaN NaN NaN NaN 0 NaN NaN 0 152380000 25536 2602 16842 16848 -0.008773164676540546 LEAELPEKY 9 Unmodified _LEAELPEKY_ 0 0 0 ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2;ENST00000552612.5_1_12:32974244-32977059:-|nuORF ENSG00000057294|ENST00000340811|PKP2 ENSG00000057294|ENST00000340811|PKP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7886962890625 2 546.284597 1090.55464 0.41523 0.00022683 -0.18814 -0.00010278 0.22709 0.00012405 546.2844447211701 89.486 0.67227 85.442 85.101 85.773 -4.0443 50 18 4 0 0 0 0.40602 1 17046 17046 25.399 7.2643 1 9024500 25537 1284 16843 16849 25241 25241 0.012985996579573111 LEAELPEKY 9 Unmodified _LEAELPEKY_ 0 0 0 ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2;ENST00000552612.5_1_12:32974244-32977059:-|nuORF ENSG00000057294|ENST00000340811|PKP2 ENSG00000057294|ENST00000340811|PKP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.284597 1090.55464 0.34901 0.00019066 -0.17508 -9.5644E-05 0.17393 9.5017E-05 546.2844920207398 85.437 0.67075 85.437 85.049 85.72 0 -0.016768 -7.7166E-05 NaN 25.399 47 18 3 NaN NaN NaN NaN 0 NaN NaN 0 8855800 25538 1284 16843 16849 0.012985996579573111 LEAELPEKY 9 Unmodified _LEAELPEKY_ 0 0 0 ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2;ENST00000552612.5_1_12:32974244-32977059:-|nuORF ENSG00000057294|ENST00000340811|PKP2 ENSG00000057294|ENST00000340811|PKP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.284597 1090.55464 0.11447 6.2536E-05 0.029894 1.633E-05 0.14437 7.8866E-05 546.2846313345187 89.295 0.77164 85.502 85.057 85.828 -3.7926 0.048847 0.00014678 NaN 25.399 53 21 3 NaN NaN NaN NaN 0 NaN NaN 0 8832600 25539 1284 16843 16849 0.012985996579573111 LEAELPEKY 9 Unmodified _LEAELPEKY_ 0 0 0 ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2;ENST00000552612.5_1_12:32974244-32977059:-|nuORF ENSG00000057294|ENST00000340811|PKP2 ENSG00000057294|ENST00000340811|PKP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.284597 1090.55464 0.28098 0.0001535 -0.071106 -3.8844E-05 0.20988 0.00011465 546.284562950174 89.183 0.67023 85.433 85.096 85.766 -3.7501 -0.020433 3.6433E-05 NaN 25.399 51 18 3 NaN NaN NaN NaN 0 NaN NaN 0 9727200 25540 1284 16843 16849 0.012985996579573111 LEAGAPDCMH 10 Unmodified _LEAGAPDCMH_ 0 0 0 REV__nc|ENSG00000008130|O95544-3|NADK REV__nc|ENSG00000008130|O95544-3|NADK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.30078125 2 522.217877 1042.4212 NaN NaN NaN NaN NaN NaN NaN 173.53 1 168.65 168.15 169.15 -4.881 0 0 0 2.8426 1 34502 34502 0.013265 0 1 + 25541 23925 16844 16850 25242 25242 -0.09831285991049299 LEAGGTVLL 9 Unmodified _LEAGGTVLL_ 0 0 0 REV__ENSG00000087076|ENST00000263278|HSD17B14 REV__ENSG00000087076|ENST00000263278|HSD17B14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2170104980469 2 436.758018 871.501483 0.075776 3.3096E-05 -0.16353 -7.1425E-05 -0.087759 -3.833E-05 436.7579248058327 71.891 0.49182 71.891 71.633 72.125 0 28 13 3 0 0 0 0.47479 1 13946 13946 37.974 5.6685 1 4433200 + 25542 14492 16845 16851 25243 25243 0.060592666659431416 LEAGGTVLL 9 Unmodified _LEAGGTVLL_ 0 0 0 REV__ENSG00000087076|ENST00000263278|HSD17B14 REV__ENSG00000087076|ENST00000263278|HSD17B14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2354431152344 2 436.758018 871.501483 0.090783 3.965E-05 -0.66831 -0.00029189 -0.57753 -0.00025224 436.7576138795795 75.334 0.59959 71.701 71.401 72.001 -3.6337 35 16 3 0 0 0 0.19271 1 14302 14302 46.021 0 1 2868200 + 25543 14492 16845 16851 25244 25244 0.060592666659431416 LEAGLRWLIQP 11 Unmodified _LEAGLRWLIQP_ 0 0 0 REV__nc|ENSG00000119535|Q99062-2|CSF3R REV__nc|ENSG00000119535|Q99062-2|CSF3R MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 648.8494262695312 2 648.377155 1294.73976 1.1486 0.00074471 -3.3345 -0.002162 -2.186 -0.0014173 648.8775749592286 170.51 0.2023 165.72 165.62 165.83 -4.7898 6 5 2 0 0 0 0.7876 1 34609 34609 5.2969 0.76802 1 6876700 + 25544 24014 16846 16852 25245 25245 0.10417627248239114 LEAGMCLL 8 Unmodified _LEAGMCLL_ 0 0 0 ENST00000367603.7_2_6:143158130-143266337:-|nuORF ENST00000367603.7_2_6:143158130-143266337:-|nuORF ENST00000367603.7_2_6:143158130-143266337:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2372741699219 2 425.214075 848.413596 NaN NaN NaN NaN NaN NaN NaN 71.384 1 67.917 67.417 68.417 -3.467 0 0 0 0.21323 1 13529 13529 14.582 5.2343 1 25545 9076 16847 16853 25246 25246 -0.016673935206767965 LEAHILPGI 9 Unmodified _LEAHILPGI_ 0 0 0 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78717041015625 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 147.89 1 147.89 147.39 148.39 0 0 0 0 0.20628 1 29588 29588 21.747 5.8995 1 25546 2279 16848 16854 25247 25247 0.07734948311224343 LEAHILPGI 9 Unmodified _LEAHILPGI_ 0 0 0 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7870178222656 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 148.16 1 148.16 147.66 148.66 0 0 0 0 0.20155 1 29648 29648 23.148 1.4018 1 25547 2279 16848 16854 25248 25248 0.07734948311224343 LEAHILPGI 9 Unmodified _LEAHILPGI_ 0 0 0 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78692626953125 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 152.39 1 147.63 147.13 148.13 -4.7523 0 0 0 0.20628 1 30281 30281 21.747 5.8995 1 25548 2279 16848 16854 25249 25249 0.07734948311224343 LEAKLVPPI 9 Unmodified _LEAKLVPPI_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2651062011719 2 490.312961 978.611368 NaN NaN NaN NaN NaN NaN NaN 114.59 1 110.28 109.78 110.78 -4.3136 0 0 0 0.19451 1 22066 22066 1.2148 1.087 1 + 25549 17219 16849 16855 25250 25250 0.1212069200513497 LEALIAHF 8 Unmodified _LEALIAHF_ 0 0 0 KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant;KLHDC4|p.R412Gfs*28|1|0.34|ENSG00000104731|chr16:87709478-87709478|G/-|frameshift_variant;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000568338.1_1_16:87791029-87795640:-|nuORF;KLHDC4|p.P61Tfs*14|1|0.27|ENSG00000104731|chr16:87761960-87761961|-/G|frameshift_variant KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 457.2188720703125 2 457.260728 912.506903 0.06435 2.9425E-05 0.67975 0.00031082 0.7441 0.00034025 457.26084513598624 147.41 0.59691 142.26 141.85 142.44 -5.1558 18 16 2 0 0 0 0.8689 1 28551 28551 13.615 11.873 1 1473500 25550 2250 16850 16856 25251 25251 0.04714990248419326 LEALIAHF 8 Unmodified _LEALIAHF_ 0 0 0 KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant;KLHDC4|p.R412Gfs*28|1|0.34|ENSG00000104731|chr16:87709478-87709478|G/-|frameshift_variant;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000568338.1_1_16:87791029-87795640:-|nuORF;KLHDC4|p.P61Tfs*14|1|0.27|ENSG00000104731|chr16:87761960-87761961|-/G|frameshift_variant KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 457.2820739746094 2 457.260728 912.506903 0.31491 0.000144 0.35766 0.00016355 0.67258 0.00030754 457.260634172485 147.23 0.59021 142.23 141.93 142.52 -5 26 16 2 0 0 0 0.42878 1 28538 28538 29.841 16.226 1 1497300 25551 2250 16850 16856 25252 25252 0.04714990248419326 LEALIAHF 8 Unmodified _LEALIAHF_ 0 0 0 KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant;KLHDC4|p.R412Gfs*28|1|0.34|ENSG00000104731|chr16:87709478-87709478|G/-|frameshift_variant;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000568338.1_1_16:87791029-87795640:-|nuORF;KLHDC4|p.P61Tfs*14|1|0.27|ENSG00000104731|chr16:87761960-87761961|-/G|frameshift_variant KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.260728 912.506903 -0.014602 -6.6771E-06 0.31865 0.00014571 0.30405 0.00013903 457.26081045522983 146.88 0.55597 142.2 141.88 142.44 -4.6868 -0.031391 -9.6738E-05 NaN 29.841 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2048100 25552 2250 16850 16856 0.04714990248419326 LEALRTMVY 9 Unmodified _LEALRTMVY_ 0 0 0 REV__ENSG00000155269|ENST00000382487|GPR78 REV__ENSG00000155269|ENST00000382487|GPR78 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7711791992188 2 548.296985 1094.57942 0.1848 0.00010133 -0.7854 -0.00043063 -0.6006 -0.0003293 548.7971136040038 95.126 0.13898 90.935 90.825 90.964 -4.1911 5 3 2 0 0 0 0.87511 1 18139 18139 3.9444 2.4625 1 840050 + 25553 17212 16851 16857 25253 25253 0.03590956259699851 LEALSWHLI 9 Unmodified _LEALSWHLI_ 0 0 0 HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2767333984375 2 541.305667 1080.59678 NaN NaN NaN NaN NaN NaN NaN 172.62 1 172.62 172.12 173.12 0 0 0 0 0.22621 1 35641 35641 15.847 1.0089 1 25554 7362 16852 16858 25254 25254 0.059706198569983826 LEALVGLAAN 10 Unmodified _LEALVGLAAN_ 0 0 0 nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12767171-12772081:-|nuORF nc|ENSG00000104774|O00754-2|MAN2B1 nc|ENSG00000104774|O00754-2|MAN2B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 486.7929382324219 2 485.782025 969.549496 0.080225 3.8972E-05 0.14057 6.8285E-05 0.22079 0.00010726 485.78199045393103 143.14 0.73347 138.24 137.84 138.58 -4.8982 39 20 3 0 0 0 0.10201 1 27642 27642 21.75 0 1 2170200 25555 2253 16853 16859 25255 25255 0.06350340585993308 LEAMLFAIDE 10 Unmodified _LEAMLFAIDE_ 0 0 0 nc|ENSG00000198822|Q14832-2|GRM3;GRM3|p.K437Vfs*13|1|0.07|ENSG00000198822|chr7:86787099-86787100|-/CGTA|frameshift_variant;ENSG00000198822|ENST00000361669|GRM3 nc|ENSG00000198822|Q14832-2|GRM3 nc|ENSG00000198822|Q14832-2|GRM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3121337890625 2 576.286282 1150.55801 0.63733 0.00036729 0.88605 0.00051062 1.5234 0.00087791 576.2871475716695 46.454 1.3943 46.454 45.968 47.362 0 74 39 3 0 0 0 0.664 1 8671 8671 14.838 0.93222 1 3823100 25556 12554 16854 16860 25256 25256 -0.011244735596847022 LEAPDPGEL 9 Unmodified _LEAPDPGEL_ 0 0 0 REV__nc|ENSG00000272391|A8CG34|POM121C REV__nc|ENSG00000272391|A8CG34|POM121C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.1745300292969 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 110.14 1 105.76 105.26 106.26 -4.3776 0 0 0 0.23508 1 21707 21707 4.5289 1.7937 1 + 25557 24304 16855 16861 25257 25257 -0.017222179560008044 LEAPDPGEL 9 Unmodified _LEAPDPGEL_ 0 0 0 REV__nc|ENSG00000272391|A8CG34|POM121C REV__nc|ENSG00000272391|A8CG34|POM121C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1545104980469 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 123.88 1 119.15 118.65 119.65 -4.731 0 0 0 0.23508 1 23796 23796 4.5289 1.7937 1 + 25558 24304 16855 16861 25258 25258 -0.017222179560008044 LEAPDPGEL 9 Unmodified _LEAPDPGEL_ 0 0 0 REV__nc|ENSG00000272391|A8CG34|POM121C REV__nc|ENSG00000272391|A8CG34|POM121C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.15997314453125 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 124.27 1 119.54 119.04 120.04 -4.731 0 0 0 0.23508 1 23866 23866 2.2828 1.0894 1 + 25559 24304 16855 16861 25259 25259 -0.017222179560008044 LEAPDPGEL 9 Unmodified _LEAPDPGEL_ 0 0 0 REV__nc|ENSG00000272391|A8CG34|POM121C REV__nc|ENSG00000272391|A8CG34|POM121C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1654968261719 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 110.54 1 106.31 105.81 106.81 -4.2289 0 0 0 0.23508 1 21275 21275 2.4985 0 1 + 25560 24304 16855 16861 25260 25260 -0.017222179560008044 LEAPSSLAKK 10 Unmodified _LEAPSSLAKK_ 0 0 0 REV__nc|ENSG00000179361|Q8IVW6-3|ARID3B REV__nc|ENSG00000179361|Q8IVW6-3|ARID3B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2813720703125 2 522.308406 1042.60226 NaN NaN NaN NaN NaN NaN NaN 58.173 1 54.967 54.467 55.467 -3.2052 0 0 0 0.22588 1 10852 10852 6.2058 0 1 + 25561 18652 16856 16862 25261 25261 0.0826629864880033 LEARHVGHY 9 Unmodified _LEARHVGHY_ 0 0 0 REV__ENST00000602377.1_1_16:67708740-67708896:-|nuORF REV__ENST00000602377.1_1_16:67708740-67708896:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2648315429688 2 541.280515 1080.54648 NaN NaN NaN NaN NaN NaN NaN 64.536 1 61.539 61.039 62.039 -2.9975 0 0 0 0.21408 1 12482 12482 19.439 2.4967 1 + 25562 23424 16857 16863 25262 25262 0.009425102518662243 LEASALIVG 9 Unmodified _LEASALIVG_ 0 0 0 REV__nc|ENSG00000157703|Q8N434-2|SVOPL REV__nc|ENSG00000157703|Q8N434-2|SVOPL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21630859375 2 436.758018 871.501483 0.095989 4.1924E-05 -0.58092 -0.00025372 -0.48493 -0.0002118 436.75768434453687 75.357 0.65562 71.634 71.377 72.033 -3.7227 34 18 3 0 0 0 0.12183 1 14229 14229 48.346 0.59716 1 2981900 + 25563 17306 16858 16864 25263 25263 0.06059266665965879 LEASDIHTA 9 Unmodified _LEASDIHTA_ 0 0 0 ENST00000552943.5_1_16:699416-703842:+|nuORF;nc|ENSG00000161996|Q96KV7-3|WDR90;ENST00000420061.6_1_16:699416-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-5|WDR90;ENST00000549648.5_1_16:699416-706047:+|nuORF;WDR90|p.P1013Qfs*98|1|0.36|ENSG00000161996|chr16:659106-659106|C/-|frameshift_variant;WDR90|p.A1071Pfs*40|1|0.36|ENSG00000161996|chr16:660080-660080|G/-|frameshift_variant;ENSG00000161996|ENST00000293879|WDR90 ENST00000552943.5_1_16:699416-703842:+|nuORF ENST00000552943.5_1_16:699416-703842:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.736083984375 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 46.91 1 44.069 43.569 44.569 -2.8409 0 0 0 0.22621 1 8851 8851 15.847 0 1 25564 5309 16859 16865 25264 25264 -0.01843699724486214 LEASIARY 8 Unmodified _LEASIARY_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5396728515625 2 461.753267 921.491981 NaN NaN NaN NaN NaN NaN NaN 69.042 1 65.506 65.006 66.006 -3.5362 0 0 0 0.10566 1 12993 12993 43.858 9.7559 1 25565 899 16860 16866 25265 25265 0.02809498380418063 LEASLLLN 8 Unmodified _LEASLLLN_ 0 0 0 REV__CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant REV__CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21649169921875 2 436.758018 871.501483 -0.19918 -8.6995E-05 -0.28378 -0.00012394 -0.48296 -0.00021094 436.75785706879185 75.027 0.66788 71.663 71.199 71.867 -3.3643 34 18 3 0 0 0 0.52597 1 14578 14578 26.884 0 1 3468500 + 25566 13246 16861 16867 25266 25266 0.0605926666595451 LEASRSLW 8 Unmodified _LEASRSLW_ 0 0 0 ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24267578125 2 481.258717 960.50288 0.17915 8.6216E-05 0.21217 0.00010211 0.39131 0.00018832 481.25866234841806 84.042 0.55777 80.133 79.899 80.457 -3.9093 27 15 2 0 0 0 0.81042 1 15924 15924 11.64 0 1 2341400 25567 5253 16862 16868 25267 25267 0.021049007547162546 LEAWSRGP 8 Unmodified _LEAWSRGP_ 0 0 0 REV__ENST00000392357.1_1_17:80010993-80011926:+|nuORF REV__ENST00000392357.1_1_17:80010993-80011926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2291259765625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 100.86 1 96.868 96.368 97.368 -3.9895 0 0 0 0.21486 1 19382 19382 9.3474 0 1 + 25568 21216 16863 16869 25268 25268 0.0003634506618936939 LECCVSGY 8 Unmodified _LECCVSGY_ 0 0 0 ENSG00000187323|ENST00000442544|DCC ENSG00000187323|ENST00000442544|DCC ENSG00000187323|ENST00000442544|DCC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2177429199219 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 64.187 1 61.189 60.689 61.689 -2.9975 0 0 0 0.21486 1 12413 12413 5.7604 0.52976 1 25569 7105 16864 16870 25269 25269 -0.10045147314087899 LECETWSQR 9 Unmodified _LECETWSQR_ 0 0 0 THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|42|3|sense THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|42|3|sense THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|42|3|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.324462890625 2 576.26113 1150.50771 NaN NaN NaN NaN NaN NaN NaN 146.28 1 141.28 140.78 141.78 -5 0 0 0 0.1963 1 28306 28306 0.073264 0.029476 1 25570 25847 16865 16871 25270 25270 -0.06152583164839598 LECMWHDL 8 Unmodified _LECMWHDL_ 0 0 0 ENST00000487796.2_1_10:135113993-135116378:-|nuORF ENST00000487796.2_1_10:135113993-135116378:-|nuORF ENST00000487796.2_1_10:135113993-135116378:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6915283203125 2 523.725338 1045.43612 NaN NaN NaN NaN NaN NaN NaN 100.5 1 100.5 99.998 101 0 0 0 0 0.22934 1 19719 19719 0.12286 0.049601 1 25571 10475 16866 16872 25271 25271 -0.08477794123041349 LEDCFMLDAST 11 Unmodified _LEDCFMLDAST_ 0 0 0 nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 nc|ENSG00000168763|Q8NE01-2|CNNM3 nc|ENSG00000168763|Q8NE01-2|CNNM3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7628173828125 2 622.762314 1243.51008 NaN NaN NaN NaN NaN NaN NaN 174.63 1 174.63 174.13 175.13 0 0 0 0 0.23379 1 36157 36157 5.2969 0 1 25572 5933 16867 16873 25272 25272 -0.10193915542049581 LEDDDDDED 9 Unmodified _LEDDDDDED_ 0 0 0 nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46;ENST00000509255.1_1_5:134109490-134113463:+|nuORF;DDX46|p.T361Rfs*7|1|0.04|ENSG00000145833|chr5:134782978-134782979|-/AAGATTAACAAAC|frameshift_variant;DDX46|p.T418Qfs*23|1|0.17|ENSG00000145833|chr5:134784448-134784448|A/-|frameshift_variant nc|ENSG00000145833|Q7L014|DDX46 nc|ENSG00000145833|Q7L014|DDX46 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 540.8206787109375 2 540.678013 1079.34147 NaN NaN NaN NaN NaN NaN NaN 164.85 1 159.81 159.31 160.31 -5.0446 0 0 0 0.19624 1 32181 32181 0 0 1 25573 4624 16868 16874 25273 25273 -0.19502402650368822 LEDDPSDPTY 10 Unmodified _LEDDPSDPTY_ 0 0 0 ENSG00000182580|ENST00000330394|EPHB3;EPHB3|p.D878Tfs*88|1|0.03|ENSG00000182580|chr3:184581064-184581065|-/ACTGCTGGGTGTGT|frameshift_variant ENSG00000182580|ENST00000330394|EPHB3 ENSG00000182580|ENST00000330394|EPHB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3365478515625 2 576.240583 1150.46661 NaN NaN NaN NaN NaN NaN NaN 60.991 1 60.991 60.491 61.491 0 0 0 0 0.22588 1 11701 11701 10.824 0.64053 1 25574 6797 16869 16875 25274 25274 -0.10260065723332445 LEDDRLRKYYL 11 Unmodified _LEDDRLRKYYL_ 0 0 0 ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3986206054688 2 742.398815 1482.78308 NaN NaN NaN NaN NaN NaN NaN 75.381 1 75.381 74.881 75.881 0 0 0 0 0.23698 1 14639 14639 2.7352 1.2533 1 25575 3888 16870 16876 25275 25275 0.060997722348702155 LEDDRLRKYYL 11 Unmodified _LEDDRLRKYYL_ 0 0 0 ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3958129882812 2 742.398815 1482.78308 NaN NaN NaN NaN NaN NaN NaN 137.34 1 132.5 132 133 -4.84 0 0 0 0.22632 1 26459 26459 0.03141 0.030845 1 25576 3888 16870 16876 25276 25276 0.060997722348702155 LEDETEDDD 9 Unmodified _LEDETEDDD_ 0 0 0 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;XRN1|p.M1309Cfs*14|1|0.4|ENSG00000114127|chr3:142335462-142335462|T/-|frameshift_variant;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1;XRN1|p.L525Yfs*9|1|0.08|ENSG00000114127|chr3:142414154-142414154|A/-|frameshift_variant;XRN1|p.L671*|1|0.28|ENSG00000114127|chr3:142403765-142403765|A/-|frameshift_variant;XRN1|p.L671Ffs*2|1|0.14|ENSG00000114127|chr3:142403764-142403765|-/AA|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2752075195312 2 540.696206 1079.37786 0.3584 0.00019378 1.7863 0.00096585 2.1447 0.0011596 540.6973087460646 102.94 0.84092 98.62 98.185 99.026 -4.3208 29 23 2 0 0 0 0.84208 1 19661 19661 7.2892 0 1 1921500 25577 26585;2778 16871 16877 25277 25277 -0.15865525753633847 LEDGERPT 8 Unmodified _LEDGERPT_ 0 0 0 REV__ENST00000562272.5_1_16:23691188-23701381:+|nuORF REV__ENST00000562272.5_1_16:23691188-23701381:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2376708984375 2 458.722164 915.429775 0.087114 3.9961E-05 -0.42372 -0.00019437 -0.33661 -0.00015441 458.72197854067053 123.66 0.70506 119.08 118.7 119.41 -4.5757 34 19 3 0 0 0 0.66265 1 24356 24356 18.135 1.1927 1 3020600 + 25578 17879 16872 16878 25278 25278 -0.031322727585575194 LEDGERPT 8 Unmodified _LEDGERPT_ 0 0 0 REV__ENST00000562272.5_1_16:23691188-23701381:+|nuORF REV__ENST00000562272.5_1_16:23691188-23701381:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2376708984375 2 458.722164 915.429775 0.087114 3.9961E-05 -0.42372 -0.00019437 -0.33661 -0.00015441 458.72197854067053 123.66 0.70506 119.08 118.7 119.41 -4.5757 34 19 3 0 0 0 0.97173 1 24356 24356 18.135 6.4947 1 3020600 + 25579 17879 16872 16878 25279 25279 -0.031322727585575194 LEDGERPT 8 Unmodified _LEDGERPT_ 0 0 0 REV__ENST00000562272.5_1_16:23691188-23701381:+|nuORF REV__ENST00000562272.5_1_16:23691188-23701381:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.722164 915.429775 0.37382 0.00017148 -0.38122 -0.00017487 -0.0073949 -3.3922E-06 458.7219140184806 123.9 0.60289 119.17 118.85 119.46 -4.731 0.034092 -4.1255E-05 NaN 18.135 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2077100 + 25580 17879 16872 16878 -0.031322727585575194 LEDHKDTV 8 Unmodified _LEDHKDTV_ 0 0 0 REV__nc|ENSG00000189068|Q6UX27-3|VSTM1 REV__nc|ENSG00000189068|Q6UX27-3|VSTM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7234191894531 2 478.737814 955.461075 -0.069025 -3.3045E-05 0.49652 0.0002377 0.4275 0.00020466 478.73809792315467 33.894 0.38341 33.894 33.795 34.178 0 16 10 2 0 0 0 0.41341 1 6222 6222 42.095 11.87 1 764380 + 25581 19190 16873 16879 25280 25280 -0.018436997244634767 LEDHTWAPP 9 Unmodified _LEDHTWAPP_ 0 0 0 ENST00000492730.1_1_1:207262876-207265203:+|nuORF;nc|ENSG00000123843|P20851-2|C4BPB;ENSG00000123843|ENST00000367078|C4BPB ENST00000492730.1_1_1:207262876-207265203:+|nuORF ENST00000492730.1_1_1:207262876-207265203:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.277099609375 2 533.253631 1064.49271 NaN NaN NaN NaN NaN NaN NaN 81.59 1 78.033 77.533 78.533 -3.557 0 0 0 0.16428 1 15937 15937 28.487 4.4663 1 25582 3283 16874 16880 25281 25281 -0.03695706970552237 LEDIKTKL 8 Unmodified _LEDIKTKL_ 0 0 0 REV__TPR|p.T205I|1|0.21|ENSG00000047410|chr1:186362919-186362919|G/A|missense_variant REV__TPR|p.T205I|1|0.21|ENSG00000047410|chr1:186362919-186362919|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2424011230469 2 480.292225 958.569897 0.70962 0.00034082 -0.63538 -0.00030517 0.074239 3.5656E-05 480.291887158387 105.12 1.2646 101.03 100.27 101.53 -4.0913 52 35 2 0 0 0 8448 1 20223 20223 0.12286 0 1 1034500 + 25583 24839 16875 16881 25282 25282 0.08895511245793841 LEDITIENV 9 Unmodified _LEDITIENV_ 0 0 0 tr|U7T5A1|U7T5A1_FUSNUGlyceroldehydratasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00495PE=4SV=1 tr|U7T5A1|U7T5A1_FUSNUGlyceroldehydratasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00495PE=4SV=1 tr|U7T5A1|U7T5A1_FUSNUGlyceroldehydratasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00495PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6829223632812 2 523.274229 1044.53391 0.097742 5.1146E-05 -0.52752 -0.00027604 -0.42978 -0.00022489 523.2741441154838 119.01 0.92139 114.51 114.15 115.07 -4.502 42 25 2 0 0 0 0.054622 1 23547 23547 14.987 0 1 1864900 25584 26460 16876 16882 25283 25283 0.013420092782780557 LEDKSLEF 8 Unmodified _LEDKSLEF_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.N1805Tfs*6|1|0.38|ENSG00000144674|chr3:37327294-37327294|A/-|frameshift_variant;GOLGA4|p.N1805Kfs*18|1|0.11|ENSG00000144674|chr3:37327293-37327294|-/A|frameshift_variant nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2626037597656 2 490.75039 979.486227 -0.39257 -0.00019265 -1.0835 -0.00053174 -1.4761 -0.0007244 490.74986306285473 80.252 0.66 76.576 76.247 76.907 -3.676 29 18 2 0 0 0 0.83888 1 15260 15260 30.637 3.7529 1 2920200 25585 4568 16877 16883 25284 25284 -0.004336449219067617 LEDKSLEF 8 Unmodified _LEDKSLEF_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.N1805Tfs*6|1|0.38|ENSG00000144674|chr3:37327294-37327294|A/-|frameshift_variant;GOLGA4|p.N1805Kfs*18|1|0.11|ENSG00000144674|chr3:37327293-37327294|-/A|frameshift_variant nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 490.75039 979.486227 0.13591 6.6696E-05 -1.6182 -0.00079416 -1.4823 -0.00072746 490.7492512746592 79.991 0.67132 76.481 76.189 76.861 -3.5102 -0.011105 -0.00014607 NaN 27.629 38 18 4 NaN NaN NaN NaN 0 NaN NaN 0 2003000 25586 4568 16877 16883 -0.004336449219067617 LEDNLKET 8 Unmodified _LEDNLKET_ 0 0 0 REV__ANK3|p.K2850Rfs*29|1|0.08|ENSG00000151150|chr10:60072332-60072332|T/-|frameshift_variant;REV__ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant REV__ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2446594238281 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 82.566 1 78.868 78.368 79.368 -3.6985 0 0 0 0.16002 1 15746 15746 36.044 1.9418 1 + 25587 13048;13047 16878 16884 25285 25285 -0.0054283292729451205 LEDQEPRSL 9 Unmodified _LEDQEPRSL_ 0 0 0 ENSG00000171773|ENST00000301944|NXNL1 ENSG00000171773|ENST00000301944|NXNL1 ENSG00000171773|ENST00000301944|NXNL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7852172851562 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 136.67 1 136.67 136.17 137.17 0 0 0 0 0.22519 1 27086 27086 16.149 0.90062 1 25588 6167 16879 16885 25286 25286 -0.004043566329301029 LEDREQAV 8 Unmodified _LEDREQAV_ 0 0 0 REV__ENSG00000127412|ENST00000265310|TRPV5 REV__ENSG00000127412|ENST00000265310|TRPV5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2450866699219 2 480.243264 958.471974 0.10569 5.0758E-05 -0.23092 -0.0001109 -0.12523 -6.014E-05 480.24322491720653 37.47 1.0936 35.122 34.413 35.506 -2.3479 66 31 3 0 0 0 0.60622 1 6658 6658 21.747 0.20967 1 3888700 + 25589 15884 16880 16886 25287 25287 -0.008922973501853448 LEDREQAV 8 Unmodified _LEDREQAV_ 0 0 0 REV__ENSG00000127412|ENST00000265310|TRPV5 REV__ENSG00000127412|ENST00000265310|TRPV5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24615478515625 2 480.243264 958.471974 0.18622 8.943E-05 -0.35587 -0.0001709 -0.16965 -8.1475E-05 480.2431377582071 37.432 1.0822 35.094 34.417 35.499 -2.3375 66 30 3 0 0 0 0.5707 1 6626 6626 24.021 1.2843 1 3156500 + 25590 15884 16880 16886 25288 25288 -0.008922973501853448 LEDRLKKY 8 Unmodified _LEDRLKKY_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2614135742188 2 532.808574 1063.60259 0.53013 0.00028246 -2.5732 -0.001371 -2.0431 -0.0010886 533.3102052554852 152.09 0.18065 146.85 146.78 146.96 -5.2365 6 4 2 0 0 0 0.73936 1 29472 29472 8.5933 0 1 1564600 25591 4568 16881 16887 25289 25289 0.07333718368658992 LEDRLQCPI 9 Unmodified _LEDRLQCPI_ 0 0 0 TRIM50|p.Q231Tfs*5|1|0.2|ENSG00000146755|chr7:73318858-73318859|-/C|frameshift_variant;ENSG00000178809|ENST00000323819|TRIM73;nc|ENSG00000146755|Q86XT4-2|TRIM50;ENSG00000146755|ENST00000333149|TRIM50 TRIM50|p.Q231Tfs*5|1|0.2|ENSG00000146755|chr7:73318858-73318859|-/C|frameshift_variant TRIM50|p.Q231Tfs*5|1|0.2|ENSG00000146755|chr7:73318858-73318859|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7937622070312 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 122.92 1 118.34 117.84 118.84 -4.5757 0 0 0 0.23508 1 24233 24233 13.042 0.51092 1 25592 4670 16882 16888 25290 25290 0.0145748173724769 LEDSCDPCND 10 Unmodified _LEDSCDPCND_ 0 0 0 REV__CASS4|p.P82Hfs*3|1|0.15|ENSG00000087589|chr20:56437367-56437367|C/-|frameshift_variant REV__CASS4|p.P82Hfs*3|1|0.15|ENSG00000087589|chr20:56437367-56437367|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 371.21832275390625 3 370.795323 1109.36414 -0.29955 -0.00011107 -0.63408 -0.00023511 -0.93363 -0.00034618 371.1291159051135 88.822 0.60432 88.822 88.43 89.034 0 22 16 2 0 0 0 1.1335 1 17377 17377 0 0 1 875190 + 25593 13269 16883 16889 25291 25291 -0.18616798058087625 LEDSKQEL 8 Unmodified _LEDSKQEL_ 0 0 0 REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6 REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2420349121094 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 101.05 1 101.05 100.55 101.55 0 0 0 0 0.22657 1 19826 19826 1.7423 0.52744 1 + 25594 19618 16884 16890 25292 25292 -0.005428329272717747 LEDSRGATL 9 Unmodified _LEDSRGATL_ 0 0 0 ENSG00000160703|ENST00000409109|NLRX1 ENSG00000160703|ENST00000409109|NLRX1 ENSG00000160703|ENST00000409109|NLRX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2359924316406 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 149.52 1 144.32 143.82 144.82 -5.1994 0 0 0 0.11195 1 28964 28964 36.127 0 1 25595 5263 16885 16891 25293 25293 0.0057998916687438395 LEDTNLLT 8 Unmodified _LEDTNLLT_ 0 0 0 ENST00000419179.5_1_7:87838740-87846454:-|nuORF;ENST00000486860.5_1_7:87839387-87846454:-|nuORF ENST00000419179.5_1_7:87838740-87846454:-|nuORF ENST00000419179.5_1_7:87838740-87846454:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2337341308594 2 459.742565 917.470577 -0.06075 -2.793E-05 0.52405 0.00024093 0.4633 0.000213 459.74259994178277 115.63 0.51286 111.15 110.84 111.36 -4.4726 20 14 2 0 0 0 8448 1 22820 22820 1.7423 0 1 1045200 25596 9649 16886 16892 25294 25294 0.008540685610569199 LEDTQLLPD 9 Unmodified _LEDTQLLPD_ 0 0 0 REV__ENSG00000118492|ENST00000397944|ADGB REV__ENSG00000118492|ENST00000397944|ADGB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2653198242188 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 141.3 1 136.65 136.15 137.15 -4.6493 0 0 0 0.22621 1 27907 27907 15.847 0 1 + 25597 15555 16887 16893 25295 25295 -0.001302772387589357 LEDVKLKL 8 Unmodified _LEDVKLKL_ 0 0 0 SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant;nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1 SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74041748046875 2 479.302593 956.590633 0.022189 1.0635E-05 0.11002 5.2731E-05 0.1322 6.3366E-05 479.30259705366865 109.78 0.68445 109.78 109.51 110.19 0 42 19 3 0 0 0 0.44257 1 21596 21596 34.402 0 1 4592700 25598 6166 16888 16894 25296 25296 0.11060101625469088 LEDVSKPPA 9 Unmodified _LEDVSKPPA_ 0 0 0 nc|ENSG00000182095|O15417-2|TNRC18;TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7220458984375 2 478.258382 954.502212 -0.073545 -3.5173E-05 0.028197 1.3486E-05 -0.045347 -2.1688E-05 478.25831920179735 33.616 1.5014 33.616 32.71 34.212 0 140 42 4 0 0 0 0.089388 1 6183 6183 75.761 25.828 1 21445000 25599 12500 16889 16895 25297 25297 0.02314061314996252 LEDVSKPPA 9 Unmodified _LEDVSKPPA_ 0 0 0 nc|ENSG00000182095|O15417-2|TNRC18;TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74163818359375 2 478.258382 954.502212 -0.37806 -0.00018081 0.47103 0.00022527 0.092965 4.4461E-05 478.2585223311232 36.044 1.874 33.65 32.599 34.473 -2.3938 174 52 5 0 0 0 0.19171 2 6531 6506;6531 38.176 5.3899 1 28102000 25600 12500 16889 16895 25298;25299 25299 0.02314061314996252 LEDVSKPPA 9 Unmodified _LEDVSKPPA_ 0 0 0 nc|ENSG00000182095|O15417-2|TNRC18;TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7377624511719 2 478.258382 954.502212 0.13308 6.3647E-05 -0.0078233 -3.7415E-06 0.12526 5.9906E-05 478.25829432779994 36.009 1.8001 33.756 32.641 34.441 -2.2527 152 51 4 0 0 0 0.021579 1 6396 6396 99.755 49.822 1 26235000 25601 12500 16889 16895 25300 25300 0.02314061314996252 LEDVSKPPA 9 Unmodified _LEDVSKPPA_ 0 0 0 nc|ENSG00000182095|O15417-2|TNRC18;TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7232666015625 2 478.258382 954.502212 0.30187 0.00014437 -0.22242 -0.00010638 0.079448 3.7997E-05 478.25820954040546 36.022 2.6236 33.745 32.625 35.249 -2.2766 189 74 4 0 0 0 0.54076 1 6172 6172 17.113 2.2746 1 24740000 25602 12500 16889 16895 25301 25301 0.02314061314996252 LEDWIALVK 9 Unmodified _LEDWIALVK_ 0 0 0 ENST00000395374.1_1_8:133816039-133823376:+|nuORF ENST00000395374.1_1_8:133816039-133823376:+|nuORF ENST00000395374.1_1_8:133816039-133823376:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7699584960938 2 543.813325 1085.6121 NaN NaN NaN NaN NaN NaN NaN 135.76 1 131.12 130.62 131.62 -4.6399 0 0 0 0.22962 1 26781 26781 14.838 3.198 1 25603 9428 16890 16896 25302 25302 0.07271486654190085 LEEAFENAY 9 Unmodified _LEEAFENAY_ 0 0 0 MPHOSPH9|p.K886Rfs*15|1|0.31|ENSG00000051825|chr12:123165407-123165414|TTTGCTTT/-|frameshift_variant;MPHOSPH9|p.T1047Nfs*4|1|0.3|ENSG00000051825|chr12:123161377-123161378|-/T|frameshift_variant;nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9 MPHOSPH9|p.K886Rfs*15|1|0.31|ENSG00000051825|chr12:123165407-123165414|TTTGCTTT/-|frameshift_variant MPHOSPH9|p.K886Rfs*15|1|0.31|ENSG00000051825|chr12:123165407-123165414|TTTGCTTT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.79443359375 2 543.242929 1084.47131 0.2497 0.00013565 0.10381 5.6394E-05 0.35351 0.00019204 543.2427417474696 100.6 0.37982 96.437 96.22 96.6 -4.1594 15 10 2 0 0 0 0.40602 1 19763 19763 25.399 1.3787 1 772940 25604 1249 16891 16897 25303 25303 -0.06755136789888638 LEEAISVVM 9 Unmodified _LEEAISVVM_ 0 0 0 nc|ENSG00000196233|Q96JN0-2|LCOR;nc|ENSG00000196233|Q96JN0|LCOR nc|ENSG00000196233|Q96JN0-2|LCOR nc|ENSG00000196233|Q96JN0-2|LCOR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 495.2209777832031 2 495.762443 989.510333 -0.14507 -7.1918E-05 0.43454 0.00021543 0.28948 0.00014351 495.76263686030575 112.63 0.63227 108.18 107.87 108.51 -4.4539 29 17 2 0 0 0 0.29643 1 22233 22233 2.8827 0 1 1502700 25605 12534 16892 16898 25304 25304 0.01515872240133831 LEEAISVVM 9 Unmodified _LEEAISVVM_ 0 0 0 nc|ENSG00000196233|Q96JN0-2|LCOR;nc|ENSG00000196233|Q96JN0|LCOR nc|ENSG00000196233|Q96JN0-2|LCOR nc|ENSG00000196233|Q96JN0-2|LCOR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 495.762443 989.510333 -0.033817 -1.6765E-05 0.11903 5.901E-05 0.085212 4.2245E-05 495.76248886124773 112.83 0.78281 108.3 107.9 108.68 -4.5259 0.089968 -4.1482E-05 NaN 2.8827 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1794900 25606 12534 16892 16898 0.01515872240133831 LEEAISVVM 9 Unmodified _LEEAISVVM_ 0 0 0 nc|ENSG00000196233|Q96JN0-2|LCOR;nc|ENSG00000196233|Q96JN0|LCOR nc|ENSG00000196233|Q96JN0-2|LCOR nc|ENSG00000196233|Q96JN0-2|LCOR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 495.762443 989.510333 0.39405 0.00019536 -0.26384 -0.0001308 0.13021 6.4554E-05 495.7623019447133 112.43 0.66249 108.15 107.87 108.53 -4.2725 -0.055964 -0.00042111 NaN 2.8827 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1105200 25607 12534 16892 16898 0.01515872240133831 LEEAKKDYERV 11 Unmodified _LEEAKKDYERV_ 0 0 0 nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3 nc|ENSG00000005175|Q9H6T3-3|RPAP3 nc|ENSG00000005175|Q9H6T3-3|RPAP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2383728027344 3 460.577025 1378.70924 NaN NaN NaN NaN NaN NaN NaN 60.192 1 60.192 59.692 60.692 0 0 0 0 0.22632 1 11537 11537 5.4027 0 1 25608 986 16893 16899 25305 25305 0.03503804072488492 LEECWMEWEK 10 Unmodified _LEECWMEWEK_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5302429199219 3 461.530029 1381.56826 NaN NaN NaN NaN NaN NaN NaN 154.02 1 154.02 153.52 154.52 0 0 0 0 2.8426 1 30866 30866 0.043787 0 1 + 25609 14106;24761 16894 16900 25306 25306 -0.10726233896775739 LEEDHKCSHF 10 Unmodified _LEEDHKCSHF_ 0 0 0 nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX nc|ENSG00000114439|Q8WY36-2|BBX nc|ENSG00000114439|Q8WY36-2|BBX MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7684936523438 2 622.771862 1243.52917 NaN NaN NaN NaN NaN NaN NaN 155.29 1 155.29 154.79 155.79 0 0 0 0 0.22588 1 31130 31130 6.2058 0.47393 1 25610 2790 16895 16901 25307 25307 -0.0828519813615003 LEEDLAKVK 9 Unmodified _LEEDLAKVK_ 0 0 0 REV__ENSG00000131459|ENST00000253778|GFPT2 REV__ENSG00000131459|ENST00000253778|GFPT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2693481445312 2 522.800414 1043.58628 0.41282 0.00021582 -0.66231 -0.00034626 -0.24949 -0.00013043 522.7999941376922 76.099 0.45461 76.099 75.923 76.378 0 19 12 2 0 0 0 0.80521 1 14837 14837 15.847 0 1 1439600 + 25611 16075 16896 16902 25308 25308 0.06622592411895312 LEEDLAKVK 9 Unmodified _LEEDLAKVK_ 0 0 0 REV__ENSG00000131459|ENST00000253778|GFPT2 REV__ENSG00000131459|ENST00000253778|GFPT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 522.800414 1043.58628 -0.065016 -3.3991E-05 -0.496 -0.00025931 -0.56102 -0.0002933 522.8001211277508 79.805 0.55412 76.129 75.833 76.387 -3.676 0.015181 0.0001196 NaN 15.847 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1796900 + 25612 16075 16896 16902 0.06622592411895312 LEEEDDDES 9 Unmodified _LEEEDDDES_ 0 0 0 REV__ENSG00000128908|ENST00000648947|INO80 REV__ENSG00000128908|ENST00000648947|INO80 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2633666992188 2 540.696206 1079.37786 0.3584 0.00019378 1.7863 0.00096585 2.1447 0.0011596 540.6973087460646 102.94 0.84092 98.62 98.185 99.026 -4.3208 29 23 2 0 0 0 0.55979 1 19722 19722 15.847 4.2069 1 1921500 + 25613 15939 16897 16903 25309 25309 -0.15865525753656584 LEEEEEEEPK 10 Unmodified _LEEEEEEEPK_ 0 0 0 REV__ENSG00000114767|ENST00000232888|RRP9 REV__ENSG00000114767|ENST00000232888|RRP9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7698364257812 2 630.77753 1259.54051 NaN NaN NaN NaN NaN NaN NaN 77.76 1 74.297 73.797 74.797 -3.4633 0 0 0 0.22588 1 15182 15182 10.074 0.6908 1 + 25614 15386 16898 16904 25310 25310 -0.07888142351657734 LEEEEEEEPK 10 Unmodified _LEEEEEEEPK_ 0 0 0 REV__ENSG00000114767|ENST00000232888|RRP9 REV__ENSG00000114767|ENST00000232888|RRP9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7597045898438 2 630.77753 1259.54051 NaN NaN NaN NaN NaN NaN NaN 77.736 1 73.97 73.47 74.47 -3.7664 0 0 0 0.22588 1 14731 14731 10.074 1.3285 1 + 25615 15386 16898 16904 25311 25311 -0.07888142351657734 LEEENRGI 8 Unmodified _LEEENRGI_ 0 0 0 nc|ENSG00000148090|Q13825-2|AUH;ENSG00000148090|ENST00000375731|AUH nc|ENSG00000148090|Q13825-2|AUH nc|ENSG00000148090|Q13825-2|AUH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2461853027344 2 480.243264 958.471974 -0.35275 -0.0001694 0.24125 0.00011586 -0.1115 -5.3546E-05 480.2434230474601 37.482 1.0741 35.014 34.331 35.405 -2.4688 72 30 3 0 0 0 0.52597 1 6892 6892 26.884 3.7352 1 4926600 25616 4727 16899 16905 25312 25312 -0.008922973501853448 LEEFKEQVKEY 11 Unmodified _LEEFKEQVKEY_ 0 0 0 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2474365234375 3 481.245163 1440.71366 NaN NaN NaN NaN NaN NaN NaN 134.16 1 129.29 128.79 129.79 -4.8726 0 0 0 0.22632 1 25773 25773 0.58532 0.55391 1 25617 26090 16900 16906 25313 25313 0.010932684954468641 LEEFKEQVKEY 11 Unmodified _LEEFKEQVKEY_ 0 0 0 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2464599609375 3 481.245163 1440.71366 NaN NaN NaN NaN NaN NaN NaN 134.08 1 129.26 128.76 129.76 -4.8175 0 0 0 0.22632 1 25814 25814 0.58532 0.41332 1 25618 26090 16900 16906 25314 25314 0.010932684954468641 LEEGESGKI 9 Unmodified _LEEGESGKI_ 0 0 0 NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant;nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8;NLRP8|p.K222Rfs*2|1|0.12|ENSG00000179709|chr19:55954719-55954719|A/-|frameshift_variant NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24554443359375 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 120.92 1 120.92 120.42 121.42 0 0 0 0 0.1761 1 23835 23835 26.884 0.54238 1 25619 6640 16901 16907 25315 25315 -0.005428329272717747 LEEGFCVINA 10 Unmodified _LEEGFCVINA_ 0 0 0 REV__ENST00000519791.5_1_8:124238797-124251345:-|nuORF REV__ENST00000519791.5_1_8:124238797-124251345:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.789794921875 2 547.762975 1093.5114 0.31362 0.00017179 -0.25792 -0.00014128 0.0557 3.0511E-05 547.7627224175278 112.67 0.92051 112.67 112.25 113.17 0 44 26 2 0 0 0 0.79872 1 22247 22247 19.257 5.3509 1 1782400 + 25620 22625 16902 16908 25316 25316 -0.031619133909771335 LEEGQKYI 8 Unmodified _LEEGQKYI_ 0 0 0 CCDC141|p.A1228Hfs*19|1|0.36|ENSG00000163492|chr2:178837541-178837541|A/-|frameshift_variant;nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141 CCDC141|p.A1228Hfs*19|1|0.36|ENSG00000163492|chr2:178837541-178837541|A/-|frameshift_variant CCDC141|p.A1228Hfs*19|1|0.36|ENSG00000163492|chr2:178837541-178837541|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2715148925781 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 127.2 1 122.58 122.08 123.08 -4.6172 0 0 0 0.20568 1 25083 25083 20.871 0 1 25621 411 16903 16909 25317 25317 0.012100613149868877 LEEGWSYY 8 Unmodified _LEEGWSYY_ 0 0 0 REV__SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant REV__SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6876220703125 2 523.726915 1045.43928 NaN NaN NaN NaN NaN NaN NaN 76.75 1 72.983 72.483 73.483 -3.7664 0 0 0 0.21486 1 14538 14538 5.7604 0 1 + 25622 19528 16904 16910 25318 25318 -0.0816250447303446 LEEHLEKF 8 Unmodified _LEEHLEKF_ 0 0 0 MED10|p.D6V|1|0.19|ENSG00000133398|chr5:6378467-6378467|T/A|missense_variant;ENST00000504058.1_1_5:6377277-6378620:-|nuORF;MED10|p.N92Mfs*11|1|0.23|ENSG00000133398|chr5:6374358-6374358|T/-|frameshift_variant;ENSG00000133398|ENST00000255764|MED10 MED10|p.D6V|1|0.19|ENSG00000133398|chr5:6378467-6378467|T/A|missense_variant MED10|p.D6V|1|0.19|ENSG00000133398|chr5:6378467-6378467|T/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2713623046875 2 522.771657 1043.52876 0.1378 7.2037E-05 -2.2855 -0.0011948 -2.1477 -0.0011227 522.7706942677901 58.408 0.10145 55.203 55.128 55.23 -3.2052 4 2 2 0 0 0 1.0011 1 10897 10897 12.532 0 1 331300 25623 3800 16905 16911 25319 25319 0.008737502063240754 LEEIESLF 8 Unmodified _LEEIESLF_ 0 0 0 ENSG00000151229|ENST00000280871|SLC2A13 ENSG00000151229|ENST00000280871|SLC2A13 ENSG00000151229|ENST00000280871|SLC2A13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2533264160156 2 490.252766 978.490978 NaN NaN NaN NaN NaN NaN NaN 135.02 1 130.38 129.88 130.88 -4.6399 0 0 0 0.21452 1 26631 26631 13.508 0 1 25624 4853 16906 16912 25320 25320 0.0008723922087483515 LEEIKKNYRYK 11 Unmodified _LEEIKKNYRYK_ 0 0 0 ENST00000482730.1_1_7:130051992-130056799:-|nuORF;CEP41|p.D55Rfs*2|1|0.33|ENSG00000106477|chr7:130412223-130412224|-/T|frameshift_variant;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41 ENST00000482730.1_1_7:130051992-130056799:-|nuORF ENST00000482730.1_1_7:130051992-130056799:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3836669921875 2 742.417008 1482.81946 NaN NaN NaN NaN NaN NaN NaN 173.48 1 168.69 168.19 169.19 -4.7898 0 0 0 0.2367 1 35389 35389 2.9952 0.26005 1 25625 496 16907 16913 25321 25321 0.09736649131536979 LEEIKLPLP 9 Unmodified _LEEIKLPLP_ 0 0 0 REV__ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant REV__ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.2278747558594 3 351.218109 1050.6325 NaN NaN NaN NaN NaN NaN NaN 104.94 1 100.72 100.22 101.22 -4.2183 0 0 0 0.19687 1 20647 20647 8.1555 0 1 + 25626 12917 16908 16914 25322 25322 0.10920657313999982 LEEKDRAAL 9 Unmodified _LEEKDRAAL_ 0 0 0 ENST00000529654.5_1_8:145616841-145618286:+|nuORF;ENSG00000173137|ENST00000308860|ADCK5 ENST00000529654.5_1_8:145616841-145618286:+|nuORF ENST00000529654.5_1_8:145616841-145618286:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2801513671875 2 522.787838 1043.56112 -0.18621 -9.7347E-05 0.21911 0.00011455 0.032902 1.7201E-05 522.7878899732412 81.142 0.59274 77.585 77.164 77.757 -3.557 45 16 4 0 0 0 0.50308 1 15840 15840 24.991 0 1 10587000 25627 6269 16909 16915 25323 25323 0.04108537609317864 LEEKEEPG 8 Unmodified _LEEKEEPG_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;HECTD4|p.L1880Pfs*22|1|0.19|ENSG00000173064|chr12:112231674-112231675|-/TAGGA|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-3|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000311694.7_1_12:112687934-112711582:-|nuORF HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2504577636719 2 465.724372 929.434192 0.37123 0.00017289 0.071422 3.3263E-05 0.44265 0.00020615 465.72451436414417 43.464 0.20742 43.464 43.362 43.569 0 7 5 2 0 0 0 0.89766 1 8135 8135 0.12286 0 1 237720 25628 6261 16910 16916 25324 25324 -0.03334808335648631 LEELIECA 8 Unmodified _LEELIECA_ 0 0 0 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.1910705566406 3 307.152888 918.436834 NaN NaN NaN NaN NaN NaN NaN 80.658 1 80.658 80.158 81.158 0 0 0 0 0.21486 1 15706 15706 3.9444 0.3479 1 25629 6131 16911 16917 25325 25325 -0.025646762023598058 LEELILYS 8 Unmodified _LEELILYS_ 0 0 0 tr|U7T622|U7T622_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00347PE=4SV=1 tr|U7T622|U7T622_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00347PE=4SV=1 tr|U7T622|U7T622_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00347PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25689697265625 2 490.270958 978.527364 NaN NaN NaN NaN NaN NaN NaN 123.87 1 119.14 118.64 119.64 -4.731 0 0 0 0.14536 1 23793 23793 38.151 3.9638 1 25630 26486 16912 16918 25326 25326 0.03724116117575704 LEEPTTPPP 9 Unmodified _LEEPTTPPP_ 0 0 0 REV__SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant REV__SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2698669433594 2 490.75039 979.486227 NaN NaN NaN NaN NaN NaN NaN 126.16 1 121.36 120.86 121.86 -4.7958 0 0 0 0.19679 1 24216 24216 0.12781 0 1 + 25631 14654 16913 16919 25327 25327 -0.004336449219067617 LEEQDANRAIT 11 Unmodified _LEEQDANRAIT_ 0 0 0 REV__COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant REV__COL6A3|p.V1771Sfs*8|3|0.08|ENSG00000163359|chr2:237366876-237366876|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7508544921875 2 630.314948 1258.61534 0.4291 0.00027047 -4.2747 -0.0026944 -3.8456 -0.002424 630.3110137786699 163.84 0.21359 158.79 158.69 158.9 -5.0446 6 5 2 0 0 0 0.93546 1 31882 31882 4.897 2.1618 1 4366000 + 25632 13496 16914 16920 25328 25328 -0.0036191502974816103 LEEQKKRGREY 11 Unmodified _LEEQKKRGREY_ 0 0 0 tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1 tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1 tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7218933105469 3 479.259918 1434.75793 0.0049518 2.3732E-06 1.922 0.00092111 1.9269 0.00092349 479.26084833388387 132.92 0.5314 128.28 128.09 128.62 -4.6399 18 14 2 0 0 0 0.96157 1 26167 26167 4.7159 0.59929 1 1995600 25633 26318 16915 16921 25329 25329 0.05793717432311496 LEERRWDL 8 Unmodified _LEERRWDL_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 372.8648681640625 3 372.864729 1115.57236 -0.72375 -0.00026986 0.62053 0.00023137 -0.10322 -3.8489E-05 372.8649217952208 43.264 0.59622 40.658 40.522 41.118 -2.606 29 16 2 0 0 0 0.86089 1 7897 7897 1.6526 0 1 1196400 + 25634 18377 16916 16922 25330 25330 0.01919359703470036 LEERRWDL 8 Unmodified _LEERRWDL_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 372.864729 1115.57236 -0.32258 -0.00012028 0.041082 1.5318E-05 -0.2815 -0.00010496 372.86471432503293 43.501 0.60571 40.782 40.482 41.087 -2.7191 0.07248 -0.00022224 NaN 1.6526 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1903900 + 25635 18377 16916 16922 0.01919359703470036 LEERRWDL 8 Unmodified _LEERRWDL_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 372.864729 1115.57236 -0.041975 -1.5651E-05 -0.017106 -6.3784E-06 -0.059081 -2.2029E-05 373.1990286921068 43.455 0.62032 40.689 40.32 40.94 -2.7661 -0.020859 -0.00028733 NaN 1.6526 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1663800 + 25636 18377 16916 16922 0.01919359703470036 LEERRWDL 8 Unmodified _LEERRWDL_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 372.864729 1115.57236 -0.72375 -0.00026986 0.62053 0.00023137 -0.10322 -3.8489E-05 372.8649217952208 43.264 0.59622 40.658 40.522 41.118 -2.606 -0.051621 0.00042593 NaN 1.6526 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1196400 + 25637 18377 16916 16922 0.01919359703470036 LEESKQLL 8 Unmodified _LEESKQLL_ 0 0 0 ENSG00000156876|ENST00000287482|SASS6 ENSG00000156876|ENST00000287482|SASS6 ENSG00000156876|ENST00000287482|SASS6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7749938964844 2 480.274032 958.533512 -0.039729 -1.9081E-05 -0.054104 -2.5985E-05 -0.093833 -4.5066E-05 480.27403874747176 72.874 1.2632 72.874 72.471 73.734 0 130 35 5 0 0 0 0.68128 1 14078 14078 16.942 2.104 1 214700000 25638 5108 16917 16923 25331 25331 0.052586343491157095 LEEVAPGA 8 Unmodified _LEEVAPGA_ 0 0 0 ENST00000507059.5_1_5:180043993-180056331:-|nuORF;nc|ENSG00000037280|P35916-3|FLT4;nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4 ENST00000507059.5_1_5:180043993-180056331:-|nuORF ENST00000507059.5_1_5:180043993-180056331:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.405029296875 1 785.40396 784.396684 0.66531 0.00052254 2.0573 0.0016159 2.7227 0.0021384 785.406068050835 107.08 0.72397 107.08 106.79 107.51 0 28 20 2 0 0 0 0.080209 3 21070 21016;21070;21112 74.396 10.833 1 3590200 25639 1177 16918 16924 25332;25333;25334 25333 -0.004138548106084272 LEEVAPGA 8 Unmodified _LEEVAPGA_ 0 0 0 ENST00000507059.5_1_5:180043993-180056331:-|nuORF;nc|ENSG00000037280|P35916-3|FLT4;nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4 ENST00000507059.5_1_5:180043993-180056331:-|nuORF ENST00000507059.5_1_5:180043993-180056331:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4053955078125 1 785.40396 784.396684 0.2346 0.00018426 1.3703 0.0010762 1.6049 0.0012605 785.4053107907747 111.33 0.58925 106.91 106.58 107.16 -4.4231 25 16 2 0 0 0 0.097641 2 21931 21886;21931 63.563 9.1686 1 3088900 25640 1177 16918 16924 25335;25336 25336 -0.004138548106084272 LEEVAPGA 8 Unmodified _LEEVAPGA_ 0 0 0 ENST00000507059.5_1_5:180043993-180056331:-|nuORF;nc|ENSG00000037280|P35916-3|FLT4;nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4 ENST00000507059.5_1_5:180043993-180056331:-|nuORF ENST00000507059.5_1_5:180043993-180056331:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4044189453125 1 785.40396 784.396684 0.7994 0.00062785 0.85696 0.00067306 1.6564 0.0013009 785.4046749014586 111.29 0.8375 107.06 106.52 107.35 -4.2289 37 23 2 0 0 0 0.080209 1 21385 21385 74.396 10.833 1 2695800 25641 1177 16918 16924 25337 25337 -0.004138548106084272 LEEVNEMDCY 10 Unmodified _LEEVNEMDCY_ 0 0 0 REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7822875976562 2 622.744121 1243.47369 NaN NaN NaN NaN NaN NaN NaN 83.728 1 83.728 83.228 84.228 0 0 0 0 0.22588 1 16325 16325 3.9444 0 1 + 25642 16441 16919 16925 25338 25338 -0.1383079243873908 LEEVNEMDCY 10 Unmodified _LEEVNEMDCY_ 0 0 0 REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7701416015625 2 622.744121 1243.47369 NaN NaN NaN NaN NaN NaN NaN 84.128 1 84.128 83.628 84.628 0 0 0 0 0.22588 1 16404 16404 3.9444 0 1 + 25643 16441 16919 16925 25339 25339 -0.1383079243873908 LEEVNEMDCY 10 Unmodified _LEEVNEMDCY_ 0 0 0 REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7793579101562 2 622.744121 1243.47369 NaN NaN NaN NaN NaN NaN NaN 88.757 1 88.757 88.257 89.257 0 0 0 0 0.22588 1 17326 17326 3.9444 0 1 + 25644 16441 16919 16925 25340 25340 -0.1383079243873908 LEEVNEMDCY 10 Unmodified _LEEVNEMDCY_ 0 0 0 REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.78125 2 622.744121 1243.47369 NaN NaN NaN NaN NaN NaN NaN 88.393 1 84.6 84.1 85.1 -3.7926 0 0 0 0.22588 1 17291 17291 3.9444 0 1 + 25645 16441 16919 16925 25341 25341 -0.1383079243873908 LEEVNEMDCY 10 Unmodified _LEEVNEMDCY_ 0 0 0 REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.755859375 2 622.744121 1243.47369 NaN NaN NaN NaN NaN NaN NaN 89.273 1 85.481 84.981 85.981 -3.7926 0 0 0 0.22588 1 17469 17469 3.9444 0 1 + 25646 16441 16919 16925 25342 25342 -0.1383079243873908 LEEVNEMDCY 10 Unmodified _LEEVNEMDCY_ 0 0 0 REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7801513671875 2 622.744121 1243.47369 NaN NaN NaN NaN NaN NaN NaN 89.971 1 86.111 85.611 86.611 -3.8595 0 0 0 0.22588 1 17603 17603 3.9444 0 1 + 25647 16441 16919 16925 25343 25343 -0.1383079243873908 LEEVNEMDCY 10 Unmodified _LEEVNEMDCY_ 0 0 0 REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7611083984375 2 622.744121 1243.47369 0.52833 0.00032902 -2.7451 -0.0017095 -2.2168 -0.0013805 622.7425604952085 121.66 0.11034 117.13 117.04 117.15 -4.5305 4 2 2 0 0 0 0.744 1 23415 23415 6.7232 1.4925 1 757030 + 25648 16441 16919 16925 25344 25344 -0.1383079243873908 LEEVNEMDCY 10 Unmodified _LEEVNEMDCY_ 0 0 0 REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant REV__STAMBPL1|p.K405Rfs*21|3|0.43|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7809448242188 2 622.744121 1243.47369 NaN NaN NaN NaN NaN NaN NaN 89.934 1 86.156 85.656 86.656 -3.7779 0 0 0 0.22588 1 17209 17209 3.9444 0 1 + 25649 16441 16919 16925 25345 25345 -0.1383079243873908 LEEYGSYW 8 Unmodified _LEEYGSYW_ 0 0 0 PROM1|p.D431G|1|0.05|ENSG00000007062|chr4:16008958-16008958|T/C|missense_variant PROM1|p.D431G|1|0.05|ENSG00000007062|chr4:16008958-16008958|T/C|missense_variant PROM1|p.D431G|1|0.05|ENSG00000007062|chr4:16008958-16008958|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6875 2 523.726915 1045.43928 NaN NaN NaN NaN NaN NaN NaN 102.77 1 98.583 98.083 99.083 -4.1861 0 0 0 0.2074 1 20200 20200 19.439 0 1 25650 12831 16920 16926 25346 25346 -0.0816250447303446 LEEYGSYW 8 Unmodified _LEEYGSYW_ 0 0 0 PROM1|p.D431G|1|0.05|ENSG00000007062|chr4:16008958-16008958|T/C|missense_variant PROM1|p.D431G|1|0.05|ENSG00000007062|chr4:16008958-16008958|T/C|missense_variant PROM1|p.D431G|1|0.05|ENSG00000007062|chr4:16008958-16008958|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6784057617188 2 523.726915 1045.43928 NaN NaN NaN NaN NaN NaN NaN 102.81 1 98.622 98.122 99.122 -4.1861 0 0 0 0.2074 1 20209 20209 19.439 0 1 25651 12831 16920 16926 25347 25347 -0.0816250447303446 LEEYYKEL 8 Unmodified _LEEYYKEL_ 0 0 0 REV__tr|U7T5B6|U7T5B6_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00006PE=4SV=1 REV__tr|U7T5B6|U7T5B6_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00006PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7816162109375 2 543.771322 1085.52809 NaN NaN NaN NaN NaN NaN NaN 139.2 1 139.2 138.7 139.7 0 0 0 0 0.21486 1 27662 27662 8.5933 0 1 + 25652 25410 16921 16927 25348 25348 -0.011250892333919182 LEFENSEGY 9 Unmodified _LEFENSEGY_ 0 0 0 nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;WDFY4|p.E2278Kfs*20|2|0.3|ENSG00000128815|chr10:48873577-48873577|G/-|frameshift_variant;nc|ENSG00000128815|Q6ZS81-2|WDFY4;WDFY4|p.L901Sfs*22|1|0.22|ENSG00000128815|chr10:48774601-48774601|C/-|frameshift_variant;WDFY4|p.R948Tfs*54|1|0.33|ENSG00000128815|chr10:48775775-48775776|-/CA|frameshift_variant;nc|ENSG00000128815|Q6ZS81-3|WDFY4;WDFY4|p.Q1607Sfs*14|1|0.47|ENSG00000128815|chr10:48807934-48807934|C/-|frameshift_variant nc|ENSG00000128815|Q6ZS81-5|WDFY4 nc|ENSG00000128815|Q6ZS81-5|WDFY4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.795166015625 2 544.232561 1086.45057 0.31708 0.00017257 -0.40808 -0.00022209 -0.090998 -4.9524E-05 544.7338219971049 125.94 0.52272 121.17 120.94 121.46 -4.7681 24 14 3 0 0 0 0.77732 1 24171 24171 7.9102 0.62092 1 1167400 25653 3542 16922 16928 25349 25349 -0.08919727169563885 LEFENSEGY 9 Unmodified _LEFENSEGY_ 0 0 0 nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;WDFY4|p.E2278Kfs*20|2|0.3|ENSG00000128815|chr10:48873577-48873577|G/-|frameshift_variant;nc|ENSG00000128815|Q6ZS81-2|WDFY4;WDFY4|p.L901Sfs*22|1|0.22|ENSG00000128815|chr10:48774601-48774601|C/-|frameshift_variant;WDFY4|p.R948Tfs*54|1|0.33|ENSG00000128815|chr10:48775775-48775776|-/CA|frameshift_variant;nc|ENSG00000128815|Q6ZS81-3|WDFY4;WDFY4|p.Q1607Sfs*14|1|0.47|ENSG00000128815|chr10:48807934-48807934|C/-|frameshift_variant nc|ENSG00000128815|Q6ZS81-5|WDFY4 nc|ENSG00000128815|Q6ZS81-5|WDFY4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7741088867188 2 544.232561 1086.45057 0.29124 0.0001585 -0.43633 -0.00023747 -0.14509 -7.8963E-05 544.2320502265534 125.92 0.52139 121.27 120.85 121.37 -4.6495 26 14 2 0 0 0 0.8204 1 24173 24173 4.756 0 1 1097700 25654 3542 16922 16928 25350 25350 -0.08919727169563885 LEFGPPDPSAG 11 Unmodified _LEFGPPDPSAG_ 0 0 0 nc|ENSG00000072071|O94910|ADGRL1;ENSG00000072071|ENST00000361434|ADGRL1;ADGRL1|p.Q699Rfs*47|1|0.4|ENSG00000072071|chr19:14159159-14159159|G/-|frameshift_variant nc|ENSG00000072071|O94910|ADGRL1 nc|ENSG00000072071|O94910|ADGRL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79541015625 2 543.758746 1085.50294 0.44985 0.00024461 -2.2459 -0.0012212 -1.7961 -0.00097662 543.7575355580205 100.85 0.66226 96.856 96.55 97.212 -3.9895 27 18 2 0 0 0 0.59903 1 19429 19429 18.146 1.2041 1 1320800 25655 1455 16923 16929 25351 25351 -0.03639144035946629 LEFKKWID 8 Unmodified _LEFKKWID_ 0 0 0 REV__ENSG00000116990|ENST00000372816|MYCL;REV__ENSG00000134323|ENST00000281043|MYCN;REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2010192871094 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 146.47 1 146.47 145.97 146.97 0 0 0 0 0.21486 1 29288 29288 3.5965 0.8613 1 + 25656 15509;16206;16369 16924 16930 25352 25352 0.05019217482708882 LEFKKWID 8 Unmodified _LEFKKWID_ 0 0 0 REV__ENSG00000116990|ENST00000372816|MYCL;REV__ENSG00000134323|ENST00000281043|MYCN;REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015075683594 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 151.54 1 146.79 146.29 147.29 -4.7523 0 0 0 0.21486 1 30108 30108 3.5965 0.8613 1 + 25657 15509;16206;16369 16924 16930 25353 25353 0.05019217482708882 LEFKKWID 8 Unmodified _LEFKKWID_ 0 0 0 REV__ENSG00000116990|ENST00000372816|MYCL;REV__ENSG00000134323|ENST00000281043|MYCN;REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20208740234375 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 152.03 1 146.85 146.35 147.35 -5.1759 0 0 0 0.21486 1 29462 29462 3.5965 0.8613 1 + 25658 15509;16206;16369 16924 16930 25354 25354 0.05019217482708882 LEFKKWID 8 Unmodified _LEFKKWID_ 0 0 0 REV__ENSG00000116990|ENST00000372816|MYCL;REV__ENSG00000134323|ENST00000281043|MYCN;REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2014465332031 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 161.16 1 155.91 155.41 156.41 -5.2526 0 0 0 0.21486 1 31276 31276 6.7232 1.8262 1 + 25659 15509;16206;16369 16924 16930 25355 25355 0.05019217482708882 LEFKKWID 8 Unmodified _LEFKKWID_ 0 0 0 REV__ENSG00000116990|ENST00000372816|MYCL;REV__ENSG00000134323|ENST00000281043|MYCN;REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017822265625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 161.37 1 156.12 155.62 156.62 -5.2526 0 0 0 0.21486 1 31319 31319 6.7232 1.8262 1 + 25660 15509;16206;16369 16924 16930 25356 25356 0.05019217482708882 LEFLEALFL 9 Unmodified _LEFLEALFL_ 0 0 0 REV__ENSG00000185972|ENST00000335119|CCIN REV__ENSG00000185972|ENST00000335119|CCIN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7802734375 2 547.810251 1093.60595 NaN NaN NaN NaN NaN NaN NaN 93.588 1 89.744 89.244 90.244 -3.844 0 0 0 0.23508 1 17943 17943 7.2892 0 1 + 25661 19002 16925 16931 25357 25357 0.06288968422654762 LEFLGQNIFY 10 Unmodified _LEFLGQNIFY_ 0 0 0 REV__nc|ENSG00000261832|Q13286-5|CLN3 REV__nc|ENSG00000261832|Q13286-5|CLN3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7584228515625 2 622.321514 1242.62847 NaN NaN NaN NaN NaN NaN NaN 26.897 1 24.974 24.474 25.474 -1.9222 0 0 0 0.22588 1 4471 4471 3.5965 0.31518 1 + 25662 19158 16926 16932 25358 25358 0.016865678202975687 LEFPVLYY 8 Unmodified _LEFPVLYY_ 0 0 0 ENST00000340020.10_1_1:222849521-222860361:-|nuORF ENST00000340020.10_1_1:222849521-222860361:-|nuORF ENST00000340020.10_1_1:222849521-222860361:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2760009765625 2 522.276044 1042.53753 NaN NaN NaN NaN NaN NaN NaN 70.572 1 67.105 66.605 67.605 -3.467 0 0 0 0.2074 1 13365 13365 19.439 2.4967 1 25663 8843 16927 16933 25359 25359 0.01796723842812753 LEFSNEEDP 9 Unmodified _LEFSNEEDP_ 0 0 0 NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant;ENSG00000179299|ENST00000381782|NSUN7;nc|ENSG00000179299|Q8NE18-2|NSUN7;nc|ENSG00000179299|Q8NE18-3|NSUN7;ENST00000473399.5_1_4:40752710-40776973:+|nuORF NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20166015625 3 360.489105 1078.44548 -0.33284 -0.00011999 0.66592 0.00024006 0.33307 0.00012007 360.8236597704925 100.73 0.3045 96.738 96.653 96.957 -3.9895 12 8 2 0 0 0 0.88338 1 19365 19365 0.77653 0.37582 1 427860 25664 6622 16928 16934 25360 25360 -0.09060031032186089 LEFSNEEDP 9 Unmodified _LEFSNEEDP_ 0 0 0 NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant;ENSG00000179299|ENST00000381782|NSUN7;nc|ENSG00000179299|Q8NE18-2|NSUN7;nc|ENSG00000179299|Q8NE18-3|NSUN7;ENST00000473399.5_1_4:40752710-40776973:+|nuORF NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 360.489105 1078.44548 0.30639 0.00011045 -0.37475 -0.00013509 -0.068362 -2.4644E-05 360.8232260040125 101.11 0.34369 96.811 96.669 97.012 -4.297 0.036301 -0.0006156 NaN 0.77653 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 668740 25665 6622 16928 16934 -0.09060031032186089 LEFVSLLESI 10 Unmodified _LEFVSLLESI_ 0 0 0 ENSG00000135749|ENST00000258229|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3262939453125 2 575.323722 1148.63289 0.29925 0.00017217 0.30598 0.00017604 0.60523 0.0003482 575.3237343967351 158.86 0.80276 158.86 158.5 159.3 0 52 22 3 0 0 0 0.372 1 31907 31907 1.9275 0 1 10402000 25666 3948 16929 16935 25361 25361 0.0645203224321449 LEFWKSWERWR 11 Unmodified _LEFWKSWERWR_ 0 0 0 GLP1R|p.R414W|1|0.33|ENSG00000112164|chr6:39085921-39085921|C/T|missense_variant GLP1R|p.R414W|1|0.33|ENSG00000112164|chr6:39085921-39085921|C/T|missense_variant GLP1R|p.R414W|1|0.33|ENSG00000112164|chr6:39085921-39085921|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2652587890625 3 541.612404 1621.81538 NaN NaN NaN NaN NaN NaN NaN 62.109 1 62.109 61.609 62.609 0 0 0 0 0.23698 1 11922 11922 1.3296 0.87513 1 25667 11853 16930 16936 25362 25362 0.029346044284693562 LEFYKIHYLDT 11 Unmodified _LEFYKIHYLDT_ 0 0 0 nc|ENSG00000167193|P46108-2|CRK;ENSG00000099942|ENST00000354336|CRKL;ENSG00000167193|ENST00000300574|CRK nc|ENSG00000167193|P46108-2|CRK nc|ENSG00000167193|P46108-2|CRK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24957275390625 3 481.250249 1440.72892 NaN NaN NaN NaN NaN NaN NaN 127.09 1 127.09 126.59 127.59 0 0 0 0 0.22632 1 25085 25085 1.4551 0 1 25668 1911 16931 16937 25363 25363 0.02618180083277366 LEFYSKLG 8 Unmodified _LEFYSKLG_ 0 0 0 nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-2|OGA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72528076171875 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 91.463 1 87.654 87.154 88.154 -3.8083 0 0 0 0.20895 1 17511 17511 18.146 1.9972 1 25669 7451 16932 16938 25364 25364 0.021952666659558417 LEFYYPEHF 9 Unmodified _LEFYYPEHF_ 0 0 0 CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant;CARD10|p.K896Rfs*9|1|0.27|ENSG00000100065|chr22:37492501-37492501|G/-|frameshift_variant;ENSG00000100065|ENST00000251973|CARD10 CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7764892578125 2 622.784764 1243.55498 NaN NaN NaN NaN NaN NaN NaN 155.42 1 155.42 154.92 155.92 0 0 0 0 0.14843 1 31159 31159 30.637 19.142 1 25670 387 16933 16939 25365 25365 -0.05705980622201423 LEFYYPEHF 9 Unmodified _LEFYYPEHF_ 0 0 0 CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant;CARD10|p.K896Rfs*9|1|0.27|ENSG00000100065|chr22:37492501-37492501|G/-|frameshift_variant;ENSG00000100065|ENST00000251973|CARD10 CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.75634765625 2 622.784764 1243.55498 1.1485 0.00071524 -0.22104 -0.00013766 0.92742 0.00057758 623.2861808960541 160.66 0.38191 155.86 155.58 155.96 -4.7952 15 10 2 0 0 0 0.11032 2 31936 31923;31936 52.268 38.653 1 1702300 25671 387 16933 16939 25366;25367 25367 -0.05705980622201423 LEFYYPEHF 9 Unmodified _LEFYYPEHF_ 0 0 0 CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant;CARD10|p.K896Rfs*9|1|0.27|ENSG00000100065|chr22:37492501-37492501|G/-|frameshift_variant;ENSG00000100065|ENST00000251973|CARD10 CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7642211914062 2 622.784764 1243.55498 0.65028 0.00040498 -0.92508 -0.00057612 -0.2748 -0.00017114 623.2855114532294 160.94 0.34836 155.68 155.56 155.91 -5.2527 14 9 2 0 0 0 0.19311 1 31219 31219 37.974 27.9 1 2671500 25672 387 16933 16939 25368 25368 -0.05705980622201423 LEGACPQR 8 Unmodified _LEGACPQR_ 0 0 0 ENST00000537729.5_2_12:122669091-122670750:+|nuORF;ENST00000541498.5_1_12:122669091-122685110:+|nuORF ENST00000537729.5_2_12:122669091-122670750:+|nuORF ENST00000537729.5_2_12:122669091-122670750:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21533203125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 89.177 1 89.177 88.677 89.677 0 0 0 0 0.21486 1 17413 17413 12.532 0.89125 1 25673 11041 16934 16940 25369 25369 -0.023875877025943737 LEGACRAGP 9 Unmodified _LEGACRAGP_ 0 0 0 ENST00000372257.6_1_1:44818530-44820748:-|nuORF ENST00000372257.6_1_1:44818530-44820748:-|nuORF ENST00000372257.6_1_1:44818530-44820748:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21563720703125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 88.923 1 88.923 88.423 89.423 0 0 0 0 0.22251 1 17360 17360 16.942 1.0951 1 25674 9175 16935 16941 25370 25370 -0.023875877025943737 LEGACRAGP 9 Unmodified _LEGACRAGP_ 0 0 0 ENST00000372257.6_1_1:44818530-44820748:-|nuORF ENST00000372257.6_1_1:44818530-44820748:-|nuORF ENST00000372257.6_1_1:44818530-44820748:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21826171875 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 92.749 1 88.824 88.324 89.324 -3.9251 0 0 0 0.22251 1 18167 18167 16.942 0 1 25675 9175 16935 16941 25371 25371 -0.023875877025943737 LEGACRAGP 9 Unmodified _LEGACRAGP_ 0 0 0 ENST00000372257.6_1_1:44818530-44820748:-|nuORF ENST00000372257.6_1_1:44818530-44820748:-|nuORF ENST00000372257.6_1_1:44818530-44820748:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2166442871094 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 92.124 1 88.316 87.816 88.816 -3.8083 0 0 0 0.22251 1 17647 17647 16.942 1.0951 1 25676 9175 16935 16941 25372 25372 -0.023875877025943737 LEGDMSSPN 9 Unmodified _LEGDMSSPN_ 0 0 0 nc|ENSG00000111087|P08151-3|GLI1;nc|ENSG00000111087|P08151-2|GLI1;GLI1|p.N1082Tfs*7|1|0.25|ENSG00000111087|chr12:57471978-57471978|C/-|frameshift_variant;ENSG00000111087|ENST00000228682|GLI1;GLI1|p.P536Qfs*77|1|0.26|ENSG00000111087|chr12:57470342-57470342|C/-|frameshift_variant;GLI1|p.P870Lfs*76|1|0.47|ENSG00000111087|chr12:57471345-57471345|C/-|frameshift_variant;GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant;ENST00000527742.1_1_12:57859296-57859723:+|nuORF;GLI1|p.E225Rfs*56|1|0.54|ENSG00000111087|chr12:57465826-57465827|-/GA|frameshift_variant nc|ENSG00000111087|P08151-3|GLI1 nc|ENSG00000111087|P08151-3|GLI1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.13580322265625 3 317.135897 948.385861 NaN NaN NaN NaN NaN NaN NaN 176.44 1 171.56 171.06 172.06 -4.8739 0 0 0 0.23508 1 35098 35098 1.0715 0.3738 1 25677 2605 16936 16942 25373 25373 -0.09039625247191907 LEGEQQII 8 Unmodified _LEGEQQII_ 0 0 0 REV__ENSG00000185038|ENST00000389758|MROH2A REV__ENSG00000185038|ENST00000389758|MROH2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24951171875 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 107.11 1 102.79 102.29 103.29 -4.32 0 0 0 0.21452 1 21089 21089 13.508 0 1 + 25678 18933 16937 16943 25374 25374 0.01945774797957256 LEGEVFRL 8 Unmodified _LEGEVFRL_ 0 0 0 REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7688903808594 2 481.768917 961.523281 0.17268 8.3191E-05 -0.21805 -0.00010505 -0.045376 -2.1861E-05 481.76878254122886 125.56 0.6113 120.96 120.61 121.22 -4.5984 28 16 2 0 0 0 0.21714 1 24770 24770 43.858 1.9027 1 3103200 + 25679 23098 16938 16944 25375 25375 0.04098071414523474 LEGGHWLS 8 Unmodified _LEGGHWLS_ 0 0 0 ENSG00000104901|ENST00000221498|DKKL1 ENSG00000104901|ENST00000221498|DKKL1 ENSG00000104901|ENST00000221498|DKKL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 300.1523132324219 3 300.152099 897.434466 NaN NaN NaN NaN NaN NaN NaN 113.96 1 113.96 113.46 114.46 0 0 0 0 0.21486 1 22413 22413 1.4819 0 1 25680 2266 16939 16945 25376 25376 -0.018353438251438092 LEGIMPNVTI 10 Unmodified _LEGIMPNVTI_ 0 0 0 ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.794921875 2 543.796817 1085.57908 NaN NaN NaN NaN NaN NaN NaN 126.77 1 122.15 121.65 122.65 -4.6172 0 0 0 0.22588 1 24998 24998 8.7454 0.83525 1 25681 1258 16940 16946 25377 25377 0.03971536539847875 LEGISNYFT 9 Unmodified _LEGISNYFT_ 0 0 0 ENSG00000168301|ENST00000404589|KCTD6 ENSG00000168301|ENST00000404589|KCTD6 ENSG00000168301|ENST00000404589|KCTD6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.282470703125 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 110.87 1 106.45 105.95 106.95 -4.4231 0 0 0 0.081239 1 21840 21840 41.84 5.7126 1 25682 5895 16941 16947 25378 25378 -0.022422425476179342 LEGISVMVM 9 Unmodified _LEGISVMVM_ 0 0 0 ENSG00000261609|ENST00000648994|GAN ENSG00000261609|ENST00000648994|GAN ENSG00000261609|ENST00000648994|GAN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2552795410156 2 489.753564 977.492575 -0.068398 -3.3498E-05 -0.53308 -0.00026108 -0.60148 -0.00029458 489.7532313230714 52.219 0.78807 49.337 49.004 49.793 -2.8824 28 22 2 0 0 0 0.57447 1 9917 9917 14.838 3.198 1 1250100 25683 7961 16942 16948 25379 25379 0.0029283371362680555 LEGKHHQA 8 Unmodified _LEGKHHQA_ 0 0 0 nc|ENSG00000029364|Q9NUM3-3|SLC39A9;nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9 nc|ENSG00000029364|Q9NUM3-3|SLC39A9 nc|ENSG00000029364|Q9NUM3-3|SLC39A9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.239990234375 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 34.412 1 34.412 33.912 34.912 0 0 0 0 0.23312 1 6296 6296 6.2058 0 1 25684 1151 16943 16949 25380 25380 0.004668632977086418 LEGKNSPGAGN 11 Unmodified _LEGKNSPGAGN_ 0 0 0 ENST00000523764.1_1_13:52603467-52603503:+|nuORF;ENST00000394422.7_2_X:129045890-129053194:+|nuORF ENST00000523764.1_1_13:52603467-52603503:+|nuORF ENST00000523764.1_1_13:52603467-52603503:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2616577148438 2 522.259445 1042.50434 NaN NaN NaN NaN NaN NaN NaN 105.85 1 105.85 105.35 106.35 0 0 0 0 0.0091479 1 20803 20803 59.368 0.68956 1 25685 9412 16944 16950 25381 25381 -0.015215099471788562 LEGKNSPGAGN 11 Unmodified _LEGKNSPGAGN_ 0 0 0 ENST00000523764.1_1_13:52603467-52603503:+|nuORF;ENST00000394422.7_2_X:129045890-129053194:+|nuORF ENST00000523764.1_1_13:52603467-52603503:+|nuORF ENST00000523764.1_1_13:52603467-52603503:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2623291015625 2 522.259445 1042.50434 NaN NaN NaN NaN NaN NaN NaN 106.1 1 106.1 105.6 106.6 0 0 0 0 0.011729 1 20852 20852 55.503 1.9272 1 25686 9412 16944 16950 25382 25382 -0.015215099471788562 LEGLVVQY 8 Unmodified _LEGLVVQY_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.53179931640625 2 460.758018 919.501483 -0.085555 -3.942E-05 0.27378 0.00012615 0.18822 8.6725E-05 460.75807126811515 134.16 0.87883 129.52 129.07 129.95 -4.6399 58 24 3 0 0 0 0.45067 1 26494 26494 30.225 2.0516 1 11941000 25687 1406 16945 16951 25383 25383 0.03851266665958519 LEGLVVQY 8 Unmodified _LEGLVVQY_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2418212890625 2 460.758018 919.501483 0.0025286 1.1651E-06 0.32319 0.00014891 0.32572 0.00015008 460.7581050187109 134.4 0.76448 129.52 129.13 129.89 -4.8726 57 21 3 0 0 0 0.11373 1 25842 25842 85.357 24.967 1 11440000 25688 1406 16945 16951 25384 25384 0.03851266665958519 LEGLVVQY 8 Unmodified _LEGLVVQY_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2332458496094 2 460.758018 919.501483 0.2074 9.5562E-05 0.10836 4.9927E-05 0.31576 0.00014549 460.75798477244456 134.37 0.80962 129.55 129.13 129.94 -4.8175 55 22 3 0 0 0 0.17017 1 25851 25851 67.344 16.489 1 9540800 25689 1406 16945 16951 25385 25385 0.03851266665958519 LEGLVVQY 8 Unmodified _LEGLVVQY_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.758018 919.501483 0.20987 9.6698E-05 0.047871 2.2057E-05 0.25774 0.00011875 460.75797393509896 129.31 0.75574 129.31 128.95 129.71 0 -0.16468 -0.00012258 NaN 74.423 47 21 3 NaN NaN NaN NaN 0 NaN NaN 0 8076100 25690 1406 16945 16951 0.03851266665958519 LEGMEEASI 9 Unmodified _LEGMEEASI_ 0 0 0 PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant;PLCH2|p.G1073Rfs*20|1|0.35|ENSG00000149527|chr1:2504173-2504174|-/C|frameshift_variant;ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2;ENST00000473964.5_1_1:2429963-2431264:+|nuORF;ENST00000462379.1_1_1:2430086-2435063:+|nuORF;nc|ENSG00000149527|O75038-5|PLCH2 PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640380859375 2 489.726058 977.437562 0.067722 3.3165E-05 0.35822 0.00017543 0.42595 0.0002086 489.7262788816382 78.989 0.6703 75.184 74.769 75.439 -3.8048 25 18 3 0 0 0 0.72864 1 15026 15026 7.2892 4.9865 1 547230 25691 4796 16946 16952 25386 25386 -0.05205881553297331 LEGMKKSH 8 Unmodified _LEGMKKSH_ 0 0 0 ZGRF1|p.R1048H|1|0.25|ENSG00000138658|chr4:112587914-112587914|C/T|missense_variant ZGRF1|p.R1048H|1|0.25|ENSG00000138658|chr4:112587914-112587914|C/T|missense_variant ZGRF1|p.R1048H|1|0.25|ENSG00000138658|chr4:112587914-112587914|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24951171875 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 86.003 1 82.053 81.553 82.553 -3.9503 0 0 0 0.21452 1 16366 16366 13.508 0 1 25692 26601 16947 16953 25387 25387 0.012935583655917071 LEGRGLRRYLH 11 Unmodified _LEGRGLRRYLH_ 0 0 0 REV__nc|ENSG00000074855|Q9HCE9-2|ANO8 REV__nc|ENSG00000074855|Q9HCE9-2|ANO8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 457.2889099121094 3 457.265227 1368.77385 NaN NaN NaN NaN NaN NaN NaN 159.94 1 155.15 154.65 155.65 -4.7952 0 0 0 0.22632 1 31804 31804 0.03141 0.025454 1 + 25693 14321 16948 16954 25388 25388 0.10421468459867356 LEGRSSLKEIE 11 Unmodified _LEGRSSLKEIE_ 0 0 0 ENSG00000196584|ENST00000359321|XRCC2 ENSG00000196584|ENST00000359321|XRCC2 ENSG00000196584|ENST00000359321|XRCC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7621459960938 2 630.843342 1259.67213 NaN NaN NaN NaN NaN NaN NaN 94.251 1 90.107 89.607 90.607 -4.1435 0 0 0 0.22632 1 17976 17976 0.00056442 0 1 25694 7285 16949 16955 25389 25389 0.052681325267712964 LEGSAIGGPD 10 Unmodified _LEGSAIGGPD_ 0 0 0 ENST00000418304.1_3_1:235490262-235491379:-|nuORF ENST00000418304.1_3_1:235490262-235491379:-|nuORF ENST00000418304.1_3_1:235490262-235491379:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2239074707031 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 75.854 1 75.854 75.354 76.354 0 0 0 0 0.1839 1 14738 14738 31.268 0.6318 1 25695 9640 16950 16956 25390 25390 -0.026113886158100286 LEGSAIGGPD 10 Unmodified _LEGSAIGGPD_ 0 0 0 ENST00000418304.1_3_1:235490262-235491379:-|nuORF ENST00000418304.1_3_1:235490262-235491379:-|nuORF ENST00000418304.1_3_1:235490262-235491379:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2250061035156 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 76.066 1 76.066 75.566 76.566 0 0 0 0 0.12865 1 14780 14780 39.95 9.3132 1 25696 9640 16950 16956 25391 25391 -0.026113886158100286 LEGSAIGGPD 10 Unmodified _LEGSAIGGPD_ 0 0 0 ENST00000418304.1_3_1:235490262-235491379:-|nuORF ENST00000418304.1_3_1:235490262-235491379:-|nuORF ENST00000418304.1_3_1:235490262-235491379:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2386779785156 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 79.396 1 75.886 75.386 76.386 -3.5102 0 0 0 0.14075 1 15505 15505 38.176 9.6887 1 25697 9640 16950 16956 25392 25392 -0.026113886158100286 LEGSAIGGPD 10 Unmodified _LEGSAIGGPD_ 0 0 0 ENST00000418304.1_3_1:235490262-235491379:-|nuORF ENST00000418304.1_3_1:235490262-235491379:-|nuORF ENST00000418304.1_3_1:235490262-235491379:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22418212890625 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 79.8 1 76.124 75.624 76.624 -3.676 0 0 0 0.10883 1 15207 15207 47.749 15.443 1 25698 9640 16950 16956 25393 25393 -0.026113886158100286 LEGSDNPDD 9 Unmodified _LEGSDNPDD_ 0 0 0 REV__RP1|p.P1648Lfs*62|1|0.32|ENSG00000104237|chr8:54628817-54628817|T/-|frameshift_variant REV__RP1|p.P1648Lfs*62|1|0.32|ENSG00000104237|chr8:54628817-54628817|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2477722167969 2 481.190894 960.367234 NaN NaN NaN NaN NaN NaN NaN 137.95 1 133.31 132.81 133.81 -4.6413 0 0 0 0.19652 1 27230 27230 0.029283 0 1 + 25699 14911 16951 16957 25394 25394 -0.11453463617431225 LEGSHVGVY 9 Unmodified _LEGSHVGVY_ 0 0 0 nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN;nc|ENSG00000167693|Q6DKJ4-2|NXN;ENST00000575455.5_1_17:722628-800182:-|nuORF;NXN|p.F200L|1|0.42|ENSG00000167693|chr17:823644-823644|G/T|missense_variant nc|ENSG00000167693|Q6DKJ4-3|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24456787109375 2 480.742899 959.471246 -0.15683 -7.5395E-05 0.17299 8.3164E-05 0.01616 7.769E-06 480.7432158006328 52.365 0.21382 49.483 49.344 49.558 -2.8824 8 5 2 0 0 0 0.40602 1 9960 9960 25.399 6.1423 1 483930 25700 5834 16952 16958 25395 25395 -0.010110919992371237 LEGSLIKGV 9 Unmodified _LEGSLIKGV_ 0 0 0 ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;DENND5B|p.V1263A|1|0.08|ENSG00000170456|chr12:31387640-31387640|A/G|missense_variant ENSG00000170456|ENST00000389082|DENND5B ENSG00000170456|ENST00000389082|DENND5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22705078125 2 458.279118 914.543683 0.13788 6.3188E-05 0.62772 0.00028767 0.7656 0.00035086 458.2793757158711 94.412 0.45665 90.221 89.947 90.404 -4.1911 15 12 2 0 0 0 0.58804 1 18017 18017 13.906 0.86358 1 751900 25701 6070 16953 16959 25396 25396 0.08299242074349422 LEGSLIKGV 9 Unmodified _LEGSLIKGV_ 0 0 0 ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;DENND5B|p.V1263A|1|0.08|ENSG00000170456|chr12:31387640-31387640|A/G|missense_variant ENSG00000170456|ENST00000389082|DENND5B ENSG00000170456|ENST00000389082|DENND5B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.279118 914.543683 -0.081256 -3.7238E-05 0.69187 0.00031707 0.61061 0.00027983 458.27929957155555 94.211 0.3487 90.221 89.932 90.28 -3.9907 -6.8726E-05 2.9846E-05 NaN 13.906 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 611620 25702 6070 16953 16959 0.08299242074349422 LEGSLPLFS 9 Unmodified _LEGSLPLFS_ 0 0 0 REV__ENST00000409598.8_2_4:152147384-152147426:-|nuORF REV__ENST00000409598.8_2_4:152147384-152147426:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23797607421875 2 481.7633 961.512048 -0.056463 -2.7202E-05 0.16043 7.7287E-05 0.10396 5.0085E-05 481.76332797683835 96.303 0.51652 96.303 96.011 96.528 0 24 14 2 0 0 0 0.69192 1 18849 18849 14.838 0 1 4527200 + 25703 21416 16954 16960 25397 25397 0.029752493203886843 LEGSLPLFS 9 Unmodified _LEGSLPLFS_ 0 0 0 REV__ENST00000409598.8_2_4:152147384-152147426:-|nuORF REV__ENST00000409598.8_2_4:152147384-152147426:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23675537109375 2 481.7633 961.512048 0.068834 3.3162E-05 0.085873 4.137E-05 0.15471 7.4532E-05 481.76329164189247 100.34 0.69534 96.181 95.904 96.6 -4.1594 40 19 3 0 0 0 0.54076 1 19697 19697 26.884 8.7373 1 4173000 + 25704 21416 16954 16960 25398 25398 0.029752493203886843 LEGVNITSP 9 Unmodified _LEGVNITSP_ 0 0 0 nc|ENSG00000165478|Q14CZ8-2|HEPACAM;ENSG00000165478|ENST00000298251|HEPACAM;HEPACAM|p.D198Tfs*57|1|0.2|ENSG00000165478|chr11:124923847-124923847|G/-|frameshift_variant nc|ENSG00000165478|Q14CZ8-2|HEPACAM nc|ENSG00000165478|Q14CZ8-2|HEPACAM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2503967285156 2 465.250557 928.486562 0.018513 8.613E-06 -0.015609 -7.2622E-06 0.0029033 1.3508E-06 465.25043988460214 146.08 0.72443 141.39 141.09 141.81 -4.6868 47 20 3 0 0 0 0.09885 1 28922 28922 56.177 3.9087 1 10205000 25705 12432 16955 16961 25399 25399 0.01945774797957256 LEGVNITSP 9 Unmodified _LEGVNITSP_ 0 0 0 nc|ENSG00000165478|Q14CZ8-2|HEPACAM;ENSG00000165478|ENST00000298251|HEPACAM;HEPACAM|p.D198Tfs*57|1|0.2|ENSG00000165478|chr11:124923847-124923847|G/-|frameshift_variant nc|ENSG00000165478|Q14CZ8-2|HEPACAM nc|ENSG00000165478|Q14CZ8-2|HEPACAM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.4974365234375 1 929.493838 928.486562 0.22855 0.00021243 0.16146 0.00015008 0.39001 0.00036251 929.4939840436077 146.03 0.59138 141.35 141.12 141.71 -4.6868 25 16 2 0 0 0 0.17935 1 28947 28947 39.95 3.8227 1 13920000 25706 12432 16955 16961 25400 25400 0.01945774797957256 LEGVTELY 8 Unmodified _LEGVTELY_ 0 0 0 PEX5L|p.K458T|1|0.38|ENSG00000114757|chr3:179808417-179808417|T/G|missense_variant PEX5L|p.K458T|1|0.38|ENSG00000114757|chr3:179808417-179808417|T/G|missense_variant PEX5L|p.K458T|1|0.38|ENSG00000114757|chr3:179808417-179808417|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.7592468261719 2 462.239658 922.464763 0.23466 0.00010847 -0.063265 -2.9244E-05 0.1714 7.9226E-05 462.23972876297836 124.84 0.67497 120.19 119.78 120.46 -4.6495 27 18 2 0 0 0 0.8784 1 24065 24065 4.2837 0 1 1894500 25707 12776 16956 16962 25401 25401 0.0004297004937825477 LEGVTELY 8 Unmodified _LEGVTELY_ 0 0 0 PEX5L|p.K458T|1|0.38|ENSG00000114757|chr3:179808417-179808417|T/G|missense_variant PEX5L|p.K458T|1|0.38|ENSG00000114757|chr3:179808417-179808417|T/G|missense_variant PEX5L|p.K458T|1|0.38|ENSG00000114757|chr3:179808417-179808417|T/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 462.239658 922.464763 0.073775 3.4102E-05 0.24071 0.00011127 0.31449 0.00014537 462.23967261390186 124.83 0.62521 120.23 119.81 120.44 -4.5984 0.030448 0.00012956 NaN 4.2837 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2289500 25708 12776 16956 16962 0.0004297004937825477 LEGVTELY 8 Unmodified _LEGVTELY_ 0 0 0 PEX5L|p.K458T|1|0.38|ENSG00000114757|chr3:179808417-179808417|T/G|missense_variant PEX5L|p.K458T|1|0.38|ENSG00000114757|chr3:179808417-179808417|T/G|missense_variant PEX5L|p.K458T|1|0.38|ENSG00000114757|chr3:179808417-179808417|T/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 462.239658 922.464763 0.31508 0.00014564 0.034221 1.5818E-05 0.3493 0.00016146 462.2396543992573 124.95 0.55414 120.18 119.95 120.51 -4.7681 -0.020678 -6.1341E-05 NaN 4.2837 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2795500 25709 12776 16956 16962 0.0004297004937825477 LEGWPLRCL 9 Unmodified _LEGWPLRCL_ 0 0 0 ENSG00000206262|ENST00000383165|FOXL2NB ENSG00000206262|ENST00000383165|FOXL2NB ENSG00000206262|ENST00000383165|FOXL2NB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.781005859375 2 543.791869 1085.56919 0.07579 4.1214E-05 2.5647 0.0013946 2.6404 0.0014359 543.7936176140104 69.529 0.25055 69.529 69.421 69.672 0 8 6 2 0 0 0 0.39168 1 13454 13454 2.6312 0 1 1001800 25710 7668 16957 16963 25402 25402 0.029823933251009294 LEGWTWTPP 9 Unmodified _LEGWTWTPP_ 0 0 0 REV__ENST00000379789.8_1_10:6275574-6275721:+|nuORF REV__ENST00000379789.8_1_10:6275574-6275721:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7835693359375 2 543.766374 1085.5182 0.22995 0.00012504 -1.0585 -0.0005756 -0.82859 -0.00045056 543.7656281294645 15.04 0.31825 15.04 14.807 15.125 0 13 8 2 0 0 0 0.64382 1 2246 2246 10.074 0.6908 1 484530 + 25711 21145 16958 16964 25403 25403 -0.021142324480933894 LEGWTWTPP 9 Unmodified _LEGWTWTPP_ 0 0 0 REV__ENST00000379789.8_1_10:6275574-6275721:+|nuORF REV__ENST00000379789.8_1_10:6275574-6275721:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.766374 1085.5182 -0.51413 -0.00027957 -0.044078 -2.3968E-05 -0.55821 -0.00030354 544.2679904908185 16.077 0.17427 14.855 14.747 14.921 -1.2219 -0.092698 0.00069724 NaN 10.074 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 280830 + 25712 21145 16958 16964 -0.021142324480933894 LEHEYIHNF 9 Unmodified _LEHEYIHNF_ 0 0 0 MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant;nc|ENSG00000166974|Q15555-2|MAPRE2;nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2;ENST00000481222.5_1_2:27224957-27246540:+|nuORF;nc|ENSG00000084764|Q9UPY8-2|MAPRE3;ENSG00000084764|ENST00000233121|MAPRE3 MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2909545898438 2 601.285463 1200.55637 0.1413 8.4961E-05 0.4939 0.00029697 0.6352 0.00038193 601.2856241300209 69.642 0.50342 69.642 69.455 69.958 0 33 13 3 0 0 0 0.10537 1 13468 13468 29.082 18.931 1 8642600 25713 5773 16959 16965 25404 25404 -0.035883465334336506 LEHEYIHNF 9 Unmodified _LEHEYIHNF_ 0 0 0 MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant;nc|ENSG00000166974|Q15555-2|MAPRE2;nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2;ENST00000481222.5_1_2:27224957-27246540:+|nuORF;nc|ENSG00000084764|Q9UPY8-2|MAPRE3;ENSG00000084764|ENST00000233121|MAPRE3 MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2897338867188 2 601.285463 1200.55637 0.4442 0.00026709 -0.09328 -5.6088E-05 0.35092 0.000211 601.2853358340964 73.154 0.4735 69.615 69.375 69.849 -3.5385 29 13 3 0 0 0 0.088942 1 13855 13855 56.177 40.028 1 4777000 25714 5773 16959 16965 25405 25405 -0.035883465334336506 LEHEYIHNF 9 Unmodified _LEHEYIHNF_ 0 0 0 MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant;nc|ENSG00000166974|Q15555-2|MAPRE2;nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2;ENST00000481222.5_1_2:27224957-27246540:+|nuORF;nc|ENSG00000084764|Q9UPY8-2|MAPRE3;ENSG00000084764|ENST00000233121|MAPRE3 MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 601.285463 1200.55637 0.59344 0.00035683 -0.22925 -0.00013785 0.36419 0.00021898 601.2853095158277 73.2 0.63701 69.524 69.296 69.933 -3.6764 -0.069833 -0.00038525 NaN 56.177 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3832400 25715 5773 16959 16965 -0.035883465334336506 LEHFERDKWFY 11 Unmodified _LEHFERDKWFY_ 0 0 0 REV__ENST00000570062.1_1_15:42476637-42483338:-|nuORF REV__ENST00000570062.1_1_15:42476637-42483338:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3794555664062 2 785.377883 1568.74121 NaN NaN NaN NaN NaN NaN NaN 105.24 1 105.24 104.74 105.74 0 0 0 0 0.23698 1 20686 20686 1.3295 0 1 + 25716 17885 16960 16966 25406 25406 -0.02040783453662698 LEHFERDKWFY 11 Unmodified _LEHFERDKWFY_ 0 0 0 REV__ENST00000570062.1_1_15:42476637-42483338:-|nuORF REV__ENST00000570062.1_1_15:42476637-42483338:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3754272460938 2 785.377883 1568.74121 NaN NaN NaN NaN NaN NaN NaN 165.34 1 165.34 164.84 165.84 0 0 0 0 0.23634 1 33543 33543 3.2813 1.9518 1 + 25717 17885 16960 16966 25407 25407 -0.02040783453662698 LEHFERDKWFY 11 Unmodified _LEHFERDKWFY_ 0 0 0 REV__ENST00000570062.1_1_15:42476637-42483338:-|nuORF REV__ENST00000570062.1_1_15:42476637-42483338:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3756103515625 2 785.377883 1568.74121 NaN NaN NaN NaN NaN NaN NaN 86.755 1 83.028 82.528 83.528 -3.727 0 0 0 0.2367 1 16962 16962 2.9952 1.5133 1 + 25718 17885 16960 16966 25408 25408 -0.02040783453662698 LEHFERDKWFY 11 Unmodified _LEHFERDKWFY_ 0 0 0 REV__ENST00000570062.1_1_15:42476637-42483338:-|nuORF REV__ENST00000570062.1_1_15:42476637-42483338:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3817138671875 2 785.377883 1568.74121 NaN NaN NaN NaN NaN NaN NaN 169.52 1 164.73 164.23 165.23 -4.7898 0 0 0 0.23634 1 34343 34343 3.2813 0.28607 1 + 25719 17885 16960 16966 25409 25409 -0.02040783453662698 LEHFERDKWFY 11 Unmodified _LEHFERDKWFY_ 0 0 0 REV__ENST00000570062.1_1_15:42476637-42483338:-|nuORF REV__ENST00000570062.1_1_15:42476637-42483338:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3764038085938 2 785.377883 1568.74121 NaN NaN NaN NaN NaN NaN NaN 171.24 1 166.45 165.95 166.95 -4.7898 0 0 0 0.23634 1 34803 34803 3.2813 0.54611 1 + 25720 17885 16960 16966 25410 25410 -0.02040783453662698 LEHFERDKWFY 11 Unmodified _LEHFERDKWFY_ 0 0 0 REV__ENST00000570062.1_1_15:42476637-42483338:-|nuORF REV__ENST00000570062.1_1_15:42476637-42483338:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3750610351562 2 785.377883 1568.74121 NaN NaN NaN NaN NaN NaN NaN 86.672 1 82.944 82.444 83.444 -3.7289 0 0 0 0.2367 1 16574 16574 2.9952 2.6446 1 + 25721 17885 16960 16966 25411 25411 -0.02040783453662698 LEHFGISEY 9 Unmodified _LEHFGISEY_ 0 0 0 nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3 nc|ENSG00000165480|Q8IX90-3|SKA3 nc|ENSG00000165480|Q8IX90-3|SKA3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7891235351562 2 547.761289 1093.50803 NaN NaN NaN NaN NaN NaN NaN 109.95 1 105.5 105 106 -4.4518 0 0 0 0.13613 1 21099 21099 32.305 8.2849 1 25722 5630 16961 16967 25412 25412 -0.034988401733244245 LEHIRKLPKNP 11 Unmodified _LEHIRKLPKNP_ 0 0 0 nc|ENSG00000180777|Q9BXX2-2|ANKRD30B;ANKRD30B|p.D965Ifs*30|3|0.08|ENSG00000180777|chr18:14848778-14848778|A/-|frameshift_variant;ANKRD30B|p.S1062Vfs*2|1|0.33|ENSG00000180777|chr18:14850356-14850356|A/-|frameshift_variant;nc|ENSG00000180777|Q9BXX2|ANKRD30B;ENSG00000180777|ENST00000690538|ANKRD30B;ANKRD30B|p.I472Tfs*16|1|0.08|ENSG00000180777|chr18:14778069-14778070|-/C|frameshift_variant nc|ENSG00000180777|Q9BXX2-2|ANKRD30B nc|ENSG00000180777|Q9BXX2-2|ANKRD30B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 673.052734375 2 672.909153 1343.80375 NaN NaN NaN NaN NaN NaN NaN 165.47 1 165.47 164.97 165.97 0 0 0 0 0.23379 1 33583 33583 5.2969 0 1 25723 161 16962 16968 25413 25413 0.14560407405156184 LEHLITEL 8 Unmodified _LEHLITEL_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 484.7867126464844 2 484.276575 966.538597 0.34321 0.00016621 -0.21823 -0.00010568 0.12498 6.0525E-05 484.2764323465518 126.66 0.98016 121.86 121.4 122.38 -4.7958 72 27 4 0 0 0 8448 1 24386 24386 33.593 9.8712 1 23642000 25724 899 16963 16969 25414 25414 0.05398938211715176 LEHLITEL 8 Unmodified _LEHLITEL_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 484.276575 966.538597 0.19075 9.2374E-05 -0.07198 -3.4858E-05 0.11877 5.7515E-05 484.2765232595395 126.41 0.95747 121.8 121.31 122.27 -4.6172 -0.053204 -2.3146E-05 NaN 33.593 75 26 4 NaN NaN NaN NaN 0 NaN NaN 0 26453000 25725 899 16963 16969 0.05398938211715176 LEHLITEL 8 Unmodified _LEHLITEL_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 484.276575 966.538597 0.020854 1.0099E-05 0.18383 8.9024E-05 0.20468 9.9124E-05 484.27658888942165 126.59 1.0367 121.89 121.39 122.43 -4.6998 0.042932 0.00022462 NaN 33.593 80 28 4 NaN NaN NaN NaN 0 NaN NaN 0 24789000 25726 899 16963 16969 0.05398938211715176 LEHLPKCIKA 10 Unmodified _LEHLPKCIKA_ 0 0 0 REV__ENSG00000168092|ENST00000527958|PAFAH1B2 REV__ENSG00000168092|ENST00000527958|PAFAH1B2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3375244140625 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 48.498 1 45.548 45.048 46.048 -2.9499 0 0 0 0.22576 1 8877 8877 14.838 2.5976 1 + 25727 17996 16964 16970 25415 25415 0.08394924422009353 LEHQEYITF 9 Unmodified _LEHQEYITF_ 0 0 0 ENSG00000108561|ENST00000225698|C1QBP ENSG00000108561|ENST00000225698|C1QBP ENSG00000108561|ENST00000225698|C1QBP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2677612304688 2 590.287671 1178.56079 NaN NaN NaN NaN NaN NaN NaN 117.57 1 113.07 112.57 113.57 -4.502 0 0 0 0.10094 1 23178 23178 38.176 2.1314 1 25728 2484 16965 16971 25416 25416 -0.02134882110522085 LEHQEYITF 9 Unmodified _LEHQEYITF_ 0 0 0 ENSG00000108561|ENST00000225698|C1QBP ENSG00000108561|ENST00000225698|C1QBP ENSG00000108561|ENST00000225698|C1QBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2477416992188 2 590.287671 1178.56079 0.81607 0.00048172 0.27731 0.00016369 1.0934 0.00064541 590.2879337077432 117.6 0.38831 112.99 112.85 113.24 -4.6106 13 10 2 0 0 0 0.36931 1 22549 22549 27.629 1.3607 1 997020 25729 2484 16965 16971 25417 25417 -0.02134882110522085 LEHQEYITF 9 Unmodified _LEHQEYITF_ 0 0 0 ENSG00000108561|ENST00000225698|C1QBP ENSG00000108561|ENST00000225698|C1QBP ENSG00000108561|ENST00000225698|C1QBP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2642211914062 2 590.287671 1178.56079 NaN NaN NaN NaN NaN NaN NaN 117.23 1 112.88 112.38 113.38 -4.3585 0 0 0 0.18489 1 22566 22566 17.113 8.9574 1 25730 2484 16965 16971 25418 25418 -0.02134882110522085 LEHQEYITF 9 Unmodified _LEHQEYITF_ 0 0 0 ENSG00000108561|ENST00000225698|C1QBP ENSG00000108561|ENST00000225698|C1QBP ENSG00000108561|ENST00000225698|C1QBP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2560424804688 2 590.287671 1178.56079 NaN NaN NaN NaN NaN NaN NaN 117.29 1 112.93 112.43 113.43 -4.3585 0 0 0 0.18489 1 22577 22577 17.113 12.216 1 25731 2484 16965 16971 25419 25419 -0.02134882110522085 LEHTAQTY 8 Unmodified _LEHTAQTY_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7690124511719 2 481.732532 961.45051 0.0094891 4.5712E-06 0.48679 0.0002345 0.49628 0.00023907 481.73268989157486 21.869 0.41694 21.869 21.635 22.052 0 28 11 3 0 0 0 0.08026 1 3676 3676 74.423 28.402 1 3071600 25732 2240 16966 16972 25420 25420 -0.031756823789010014 LEHTAQTY 8 Unmodified _LEHTAQTY_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2336120605469 2 481.732532 961.45051 0.85584 0.00041229 -0.76338 -0.00036774 0.092459 4.4541E-05 481.7321949063224 23.435 0.39075 21.881 21.691 22.081 -1.5532 23 10 3 0 0 0 0.15314 1 4039 4039 74.423 32.328 1 3083500 25733 2240 16966 16972 25421 25421 -0.031756823789010014 LEHTAQTY 8 Unmodified _LEHTAQTY_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77984619140625 2 481.732532 961.45051 -0.47568 -0.00022915 0.75902 0.00036564 0.28334 0.00013649 481.73284754243065 23.561 0.38699 21.772 21.593 21.98 -1.7886 21 10 3 0 0 0 0.08026 1 3786 3786 74.423 36.449 1 2169000 25734 2240 16966 16972 25422 25422 -0.031756823789010014 LEHTAQTY 8 Unmodified _LEHTAQTY_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 481.732532 961.45051 -0.022586 -1.088E-05 0.49724 0.00023954 0.47465 0.00022866 481.732736339702 23.323 0.31984 21.869 21.716 22.035 -1.4535 0.021312 0.00027067 NaN 74.423 20 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2658600 25735 2240 16966 16972 -0.031756823789010014 LEHTRGKD 8 Unmodified _LEHTRGKD_ 0 0 0 REV__PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant REV__PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.1696472167969 3 319.170041 954.488293 NaN NaN NaN NaN NaN NaN NaN 43.937 1 41.19 40.69 41.69 -2.7475 0 0 0 0.21486 1 7947 7947 1.3295 0.553 1 + 25736 14852 16967 16973 25423 25423 0.009228286065649627 LEHVAPQL 8 Unmodified _LEHVAPQL_ 0 0 0 SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1 SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75543212890625 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 72.31 1 72.31 71.81 72.81 0 0 0 0 0.19753 1 14019 14019 25.399 3.6527 1 25737 7695 16968 16974 25424 25424 0.04053802243049631 LEHVAPQL 8 Unmodified _LEHVAPQL_ 0 0 0 SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1 SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7557067871094 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 72.539 1 72.539 72.039 73.039 0 0 0 0 0.14659 1 14068 14068 37.974 9.4872 1 25738 7695 16968 16974 25425 25425 0.04053802243049631 LEHVAPQL 8 Unmodified _LEHVAPQL_ 0 0 0 SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1 SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75543212890625 2 453.75581 905.497067 -0.15493 -7.03E-05 0.18042 8.1866E-05 0.02549 1.1566E-05 453.75582571157344 75.704 0.49107 72.288 72.05 72.541 -3.4151 21 13 2 0 0 0 0.19607 2 14739 14739;14782 46.021 17.534 1 2603800 25739 7695 16968 16974 25426;25427 25426 0.04053802243049631 LEHVAPQL 8 Unmodified _LEHVAPQL_ 0 0 0 SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1 SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7556457519531 2 453.75581 905.497067 0.049766 2.2582E-05 -0.16106 -7.3081E-05 -0.11129 -5.05E-05 453.75569265020954 76.078 0.58705 72.355 72.135 72.722 -3.7227 26 16 2 0 0 0 0.19607 2 14378 14378;14425 46.021 13.715 1 1696200 25740 7695 16968 16974 25428;25429 25428 0.04053802243049631 LEHVAPQL 8 Unmodified _LEHVAPQL_ 0 0 0 SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1 SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7557678222656 2 453.75581 905.497067 0.17029 7.7271E-05 -0.12096 -5.4887E-05 0.049331 2.2384E-05 453.7557117534671 76.012 0.64967 72.378 72.1 72.749 -3.6337 29 18 2 0 0 0 0.19607 3 14467 14467;14486;14502 46.021 7.8698 1 1746800 25741 7695 16968 16974 25430;25431;25432 25430 0.04053802243049631 LEHVQPWSV 9 Unmodified _LEHVQPWSV_ 0 0 0 nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP nc|ENSG00000067057|Q01813-2|PFKP nc|ENSG00000067057|Q01813-2|PFKP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7852172851562 2 547.785099 1093.55564 0.6146 0.00033667 -0.31662 -0.00017344 0.29798 0.00016323 547.7847930622166 105.12 0.83876 105.12 104.65 105.49 0 39 23 2 0 0 0 0.15889 1 20694 20694 43.982 33.083 1 3132700 25742 1382 16969 16975 25433 25433 0.012608588175226032 LEHVQPWSV 9 Unmodified _LEHVQPWSV_ 0 0 0 nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP nc|ENSG00000067057|Q01813-2|PFKP nc|ENSG00000067057|Q01813-2|PFKP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.783203125 2 547.785099 1093.55564 0.73486 0.00040255 -0.86267 -0.00047256 -0.12781 -7.0011E-05 547.7840518362168 109.27 0.59643 105.09 104.74 105.33 -4.1826 24 16 2 0 0 0 0.26842 1 21035 21035 33.445 11.908 1 905490 25743 1382 16969 16975 25434 25434 0.012608588175226032 LEIIRVILKLY 11 Unmodified _LEIIRVILKLY_ 0 0 0 ENST00000326298.8_1_6:99991433-99997239:-|nuORF;nc|ENSG00000112237|P24863-2|CCNC;ENSG00000112237|ENST00000520429|CCNC ENST00000326298.8_1_6:99991433-99997239:-|nuORF ENST00000326298.8_1_6:99991433-99997239:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2379150390625 3 458.302396 1371.88536 0.24368 0.00011168 0.87045 0.00039893 1.1141 0.00051061 458.3030766640219 113.06 0.61529 113.06 112.8 113.41 0 26 17 2 0 0 0 0.96218 1 22221 22221 0.40827 0.32491 1 1581800 25744 2675 16970 16976 25435 25435 0.21429090044421173 LEIIYDGP 8 Unmodified _LEIIYDGP_ 0 0 0 REV__nc|ENSG00000144730|Q8NFM7-2|IL17RD REV__nc|ENSG00000144730|Q8NFM7-2|IL17RD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2416076660156 2 460.242201 918.469849 NaN NaN NaN NaN NaN NaN NaN 72.221 1 72.221 71.721 72.721 0 0 0 0 0.21486 1 13999 13999 9.3474 0 1 + 25745 16798 16971 16977 25436 25436 0.00735273912005141 LEIKSESIF 9 Unmodified _LEIKSESIF_ 0 0 0 REV__ENSG00000050030|ENST00000055682|NEXMIF REV__ENSG00000050030|ENST00000055682|NEXMIF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.263427734375 2 533.294965 1064.57538 NaN NaN NaN NaN NaN NaN NaN 119.26 1 114.76 114.26 115.26 -4.502 0 0 0 0.23508 1 23519 23519 7.2892 1.0834 1 + 25746 14081 16972 16978 25437 25437 0.04567190037596447 LEIMELLL 8 Unmodified _LEIMELLL_ 0 0 0 ENSG00000072315|ENST00000262839|TRPC5 ENSG00000072315|ENST00000262839|TRPC5 ENSG00000072315|ENST00000262839|TRPC5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 487.28680419921875 2 487.285554 972.556555 NaN NaN NaN NaN NaN NaN NaN 151.39 1 146.64 146.14 147.14 -4.7523 0 0 0 0.21486 1 30076 30076 5.2307 0 1 25747 1464 16973 16979 25438 25438 0.06917937142213759 LEINVKSFSI 10 Unmodified _LEINVKSFSI_ 0 0 0 tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1 tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1 tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3253173828125 2 575.329339 1148.64412 0.29043 0.00016709 -0.17529 -0.00010085 0.11514 6.6244E-05 575.3291598979041 130.78 1.0264 130.78 130.3 131.33 0 55 28 3 0 0 0 0.65108 1 25802 25802 16.149 0.90062 1 10821000 25748 25879 16974 16980 25439 25439 0.07574854337326542 LEKAAFKL 8 Unmodified _LEKAAFKL_ 0 0 0 REV__CHMP1B|p.C25Mfs*3|1|0.48|ENSG00000255112|chr18:11851577-11851578|-/A|frameshift_variant REV__CHMP1B|p.C25Mfs*3|1|0.48|ENSG00000255112|chr18:11851577-11851578|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.19049072265625 3 307.191894 918.553853 NaN NaN NaN NaN NaN NaN NaN 113.4 1 108.95 108.45 109.45 -4.4539 0 0 0 0.21486 1 22343 22343 1.6526 0 1 + 25749 13407 16975 16981 25440 25440 0.09131849799553038 LEKAYEAR 8 Unmodified _LEKAYEAR_ 0 0 0 ENSG00000004700|ENST00000444129|RECQL ENSG00000004700|ENST00000444129|RECQL ENSG00000004700|ENST00000444129|RECQL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2647399902344 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 90.315 1 86.537 86.037 87.037 -3.7779 0 0 0 0.17344 1 17283 17283 34.102 1.797 1 25750 976 16976 16982 25441 25441 0.023328834091330464 LEKDFSSM 8 Unmodified _LEKDFSSM_ 0 0 0 ENST00000413027.1_1_6:31248141-31248948:+|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000467870.1_1_14:57445264-57445663:+|nuORF;ENST00000474162.1_1_5:60686735-60687614:-|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72222900390625 2 478.723318 955.432083 -0.2885 -0.00013811 0.75149 0.00035976 0.46299 0.00022164 478.72334677405337 57.18 0.65798 57.18 56.85 57.508 0 32 18 2 0 0 0 0.39104 1 10883 10883 32.786 3.7041 1 2518400 25751 1951 16977 16983 25442 25442 -0.04741560345109974 LEKDFSSM 8 Unmodified _LEKDFSSM_ 0 0 0 ENST00000413027.1_1_6:31248141-31248948:+|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000467870.1_1_14:57445264-57445663:+|nuORF;ENST00000474162.1_1_5:60686735-60687614:-|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72308349609375 2 478.723318 955.432083 -0.0083808 -4.0121E-06 0.15302 7.3256E-05 0.14464 6.9243E-05 478.723290003153 60.115 0.65848 57.182 56.785 57.444 -2.9333 31 18 2 0 0 0 0.11546 3 11555 11506;11555;11603 60.074 7.8056 1 3056000 25752 1951 16977 16983 25443;25444;25445 25444 -0.04741560345109974 LEKDFSSM 8 Unmodified _LEKDFSSM_ 0 0 0 ENST00000413027.1_1_6:31248141-31248948:+|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000467870.1_1_14:57445264-57445663:+|nuORF;ENST00000474162.1_1_5:60686735-60687614:-|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7231140136719 2 478.723318 955.432083 0.086009 4.1174E-05 0.30433 0.00014569 0.39034 0.00018686 478.72326696223064 60.431 0.66622 57.117 56.764 57.431 -3.3139 30 18 2 0 0 0 0.12741 2 11245 11245;11293 57.722 5.4536 1 1977000 25753 1951 16977 16983 25446;25447 25446 -0.04741560345109974 LEKDFSSM 8 Unmodified _LEKDFSSM_ 0 0 0 ENST00000413027.1_1_6:31248141-31248948:+|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000467870.1_1_14:57445264-57445663:+|nuORF;ENST00000474162.1_1_5:60686735-60687614:-|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF ENST00000413027.1_1_6:31248141-31248948:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7234191894531 2 478.723318 955.432083 0.14516 6.949E-05 0.40775 0.0001952 0.5529 0.00026469 478.7233052589449 60.371 0.60075 57.148 56.747 57.348 -3.2237 35 16 3 0 0 0 0.11546 2 11302 11248;11302 60.074 11.728 1 2593300 25754 1951 16977 16983 25448;25449 25449 -0.04741560345109974 LEKDHFPVP 9 Unmodified _LEKDHFPVP_ 0 0 0 REV__ENSG00000118492|ENST00000397944|ADGB REV__ENSG00000118492|ENST00000397944|ADGB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.269287109375 2 541.287474 1080.5604 -0.16247 -8.7943E-05 0.31049 0.00016806 0.14802 8.0119E-05 541.2875445074028 106.7 1.115 102.43 101.83 102.95 -4.2638 71 31 3 0 0 0 0.16619 1 21038 21038 41.84 5.7126 1 4820800 + 25755 15555 16978 16984 25450 25450 0.023337429602861448 LEKDIQQHI 9 Unmodified _LEKDIQQHI_ 0 0 0 REV__ENSG00000158106|ENST00000289013|RHPN1 REV__ENSG00000158106|ENST00000289013|RHPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2081604003906 3 375.208384 1122.60332 -0.79251 -0.00029736 0.75122 0.00028186 -0.041297 -1.5495E-05 375.20856638250314 45.415 0.34857 42.549 42.362 42.711 -2.8666 17 9 2 0 0 0 0.72108 1 8227 8227 5.2969 0 1 671810 + 25756 17323 16979 16985 25451 25451 0.04692513017721467 LEKEGDEGGL 10 Unmodified _LEKEGDEGGL_ 0 0 0 REV__ENSG00000261609|ENST00000648994|GAN REV__ENSG00000261609|ENST00000648994|GAN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6923217773438 2 523.753661 1045.49277 0.31825 0.00016669 2.671 0.0013989 2.9892 0.0015656 523.7547021827924 98.268 0.90681 98.268 97.81 98.717 0 47 25 2 0 0 0 0.70987 1 19177 19177 18.146 0.011366 1 2813000 + 25757 19889 16980 16986 25452 25452 -0.028157517611589356 LEKELEEEDEP 11 Unmodified _LEKELEEEDEP_ 0 0 0 REV__ENST00000495589.5_1_1:155181271-155183486:+|nuORF REV__ENST00000495589.5_1_1:155181271-155183486:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75927734375 3 453.876917 1358.60892 NaN NaN NaN NaN NaN NaN NaN 160.32 1 155.07 154.57 155.57 -5.2526 0 0 0 0.2326 1 31115 31115 6.2344 1.5184 1 + 25758 18333 16981 16987 25453 25453 -0.05603897771766242 LEKELQRY 8 Unmodified _LEKELQRY_ 0 0 0 REV__ENSG00000076513|ENST00000261739|ANKRD13A REV__ENSG00000076513|ENST00000261739|ANKRD13A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 89.037 1 89.037 88.537 89.537 0 0 0 0 0.21486 1 17384 17384 1.4819 0 1 + 25759 14351 16982 16988 25454 25454 0.0461712798901317 LEKETIDA 8 Unmodified _LEKETIDA_ 0 0 0 REV__tr|U7SWD7|U7SWD7_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00991PE=4SV=1 REV__tr|U7SWD7|U7SWD7_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00991PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24420166015625 2 459.742565 917.470577 0.21613 9.9365E-05 0.042501 1.9539E-05 0.25863 0.0001189 459.74250559869716 113.76 0.95047 113.76 113.34 114.29 0 72 26 4 0 0 0 0.087478 1 22394 22394 78.149 0 1 23098000 + 25760 25201 16983 16989 25455 25455 0.008540685610455512 LEKETIDA 8 Unmodified _LEKETIDA_ 0 0 0 REV__tr|U7SWD7|U7SWD7_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00991PE=4SV=1 REV__tr|U7SWD7|U7SWD7_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00991PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2444152832031 2 459.742565 917.470577 0.12832 5.8996E-05 0.13763 6.3276E-05 0.26596 0.00012227 459.74255461188 118.1 0.97391 113.6 113.1 114.08 -4.502 76 27 4 0 0 0 0.087478 2 23254 23254;23300 78.149 0 1 22845000 + 25761 25201 16983 16989 25456;25457 25456 0.008540685610455512 LEKETIDA 8 Unmodified _LEKETIDA_ 0 0 0 REV__tr|U7SWD7|U7SWD7_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00991PE=4SV=1 REV__tr|U7SWD7|U7SWD7_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00991PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2440490722656 2 459.742565 917.470577 0.40568 0.00018651 -0.24368 -0.00011203 0.162 7.4478E-05 459.74239806167276 118.35 1.0428 113.74 113.21 114.25 -4.6106 70 28 3 0 0 0 0.087478 1 22724 22724 78.149 0 1 22694000 + 25762 25201 16983 16989 25458 25458 0.008540685610455512 LEKEYPRKNRM 11 Unmodified _LEKEYPRKNRM_ 0 0 0 FAM161A|p.L319Ffs*8|1|0.25|ENSG00000170264|chr2:61840047-61840048|-/A|frameshift_variant;FAM161A|p.L319Wfs*10|1|0.21|ENSG00000170264|chr2:61840048-61840048|A/-|frameshift_variant;nc|ENSG00000170264|Q3B820-2|FAM161A;FAM161A|p.L549Ifs*9|1|0.22|ENSG00000170264|chr2:61836048-61836049|-/T|frameshift_variant;nc|ENSG00000170264|Q3B820|FAM161A;ENSG00000170264|ENST00000404929|FAM161A FAM161A|p.L319Ffs*8|1|0.25|ENSG00000170264|chr2:61840047-61840048|-/A|frameshift_variant FAM161A|p.L319Ffs*8|1|0.25|ENSG00000170264|chr2:61840047-61840048|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 732.3201293945312 2 732.39301 1462.77147 0.45812 0.00033552 -4.047 -0.002964 -3.5889 -0.0026285 732.3912642883118 169.76 0.17145 169.76 169.67 169.84 0 5 4 2 0 0 0 0.96102 1 34870 34870 2.9952 0.26005 1 9404800 25763 6051 16984 16990 25459 25459 0.0585925193984167 LEKFFAAEK 9 Unmodified _LEKFFAAEK_ 0 0 0 REV__ENSG00000120029|ENST00000370033|ARMH3 REV__ENSG00000120029|ENST00000370033|ARMH3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.28076171875 2 541.797675 1081.5808 0.23065 0.00012497 0.617 0.00033429 0.84765 0.00045926 542.298672937555 54.998 0.17197 54.998 54.914 55.086 0 6 4 2 0 0 0 0.85111 1 10502 10502 6.7232 5.3936 1 478170 + 25764 15606 16985 16991 25460 25460 0.04326913620070627 LEKFPNKIY 9 Unmodified _LEKFPNKIY_ 0 0 0 tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1 tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1 tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3243408203125 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 92.169 1 88.361 87.861 88.861 -3.8083 0 0 0 0.19632 1 17658 17658 0.073264 0 1 25765 25944 16986 16992 25461 25461 0.06935175545527272 LEKFPNKIY 9 Unmodified _LEKFPNKIY_ 0 0 0 tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1 tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1 tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.32763671875 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 93.328 1 89.484 88.984 89.984 -3.844 0 0 0 0.19632 1 17893 17893 0.073264 0 1 25766 25944 16986 16992 25462 25462 0.06935175545527272 LEKGYKKNV 9 Unmodified _LEKGYKKNV_ 0 0 0 tr|U7SSX8|U7SSX8_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01539PE=4SV=1 tr|U7SSX8|U7SSX8_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01539PE=4SV=1 tr|U7SSX8|U7SSX8_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01539PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2127380371094 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 160.95 1 156.16 155.66 156.66 -4.7952 0 0 0 0.23508 1 32008 32008 2.7352 0.23671 1 25767 26116 16987 16993 25463 25463 0.0825400488570267 LEKHAETAF 9 Unmodified _LEKHAETAF_ 0 0 0 REV__SYNE1|p.K730E|1|0.08|ENSG00000131018|chr6:152462800-152462800|T/C|missense_variant REV__SYNE1|p.K730E|1|0.08|ENSG00000131018|chr6:152462800-152462800|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6768188476562 2 523.269281 1044.52401 -0.059455 -3.1111E-05 -0.95259 -0.00049846 -1.012 -0.00052957 523.2688333589597 82.801 1.1374 79.102 78.384 79.521 -3.6985 68 32 4 0 0 0 0.77732 1 15877 15877 7.9102 5.6074 1 4471500 + 25768 24759 16988 16994 25464 25464 0.0035286606357658457 LEKHDLPQ 8 Unmodified _LEKHDLPQ_ 0 0 0 REV__PCDHA6|p.E526K|1|0.28|ENSG00000081842|chr5:140829667-140829667|G/A|missense_variant REV__PCDHA6|p.E526K|1|0.28|ENSG00000081842|chr5:140829667-140829667|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26513671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 92.222 1 88.413 87.913 88.913 -3.8083 0 0 0 0.20895 1 17668 17668 18.146 1.2041 1 + 25769 24442 16989 16995 25465 25465 0.023328834091330464 LEKIIPLVVK 10 Unmodified _LEKIIPLVVK_ 0 0 0 nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;CAND1|p.N680Kfs*3|1|0.24|ENSG00000111530|chr12:67305701-67305702|-/A|frameshift_variant;CAND1|p.I276Kfs*13|1|0.07|ENSG00000111530|chr12:67297825-67297826|-/AAACTTTTAAAGAT|frameshift_variant;nc|ENSG00000111530|Q86VP6-3|CAND1 nc|ENSG00000111530|Q86VP6-2|CAND1 nc|ENSG00000111530|Q86VP6-2|CAND1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3272705078125 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 78.946 1 75.141 74.641 75.641 -3.8048 0 0 0 0.22588 1 14974 14974 3.2813 1.2216 1 25770 2625 16990 16996 25466 25466 0.19957771544500247 LEKIKLVLPV 10 Unmodified _LEKIKLVLPV_ 0 0 0 REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1 REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3216552734375 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 172.8 1 172.8 172.3 173.3 0 0 0 0 0.22588 1 35694 35694 1.6526 0.17072 1 + 25771 25368 16991 16997 25467 25467 0.1995777154447751 LEKININKY 9 Unmodified _LEKININKY_ 0 0 0 tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1 tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1 tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 567.256103515625 2 567.829506 1133.64446 0.13753 7.8096E-05 1.1362 0.00064516 1.2737 0.00072326 567.8299941992508 154.25 0.13974 148.98 148.89 149.03 -5.2669 6 3 2 0 0 0 0.64208 1 29912 29912 0.40827 0 1 1041100 25772 26210 16992 16998 25468 25468 0.0829827405721062 LEKIQERY 8 Unmodified _LEKIQERY_ 0 0 0 REV__tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1 REV__tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 114.27 1 109.79 109.29 110.29 -4.4726 0 0 0 0.21486 1 22518 22518 3.9444 0 1 + 25773 25069 16993 16999 25469 25469 0.0461712798901317 LEKKFAKM 8 Unmodified _LEKKFAKM_ 0 0 0 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.2232971191406 3 332.196651 993.568123 NaN NaN NaN NaN NaN NaN NaN 122.89 1 118.16 117.66 118.66 -4.731 0 0 0 0.21486 1 23607 23607 1.6526 0 1 + 25774 18033 16994 17000 25470 25470 0.07108178956207212 LEKKKKER 8 Unmodified _LEKKKKER_ 0 0 0 REV__ENST00000575042.1_1_16:3493766-3500111:+|nuORF REV__ENST00000575042.1_1_16:3493766-3500111:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 529.873779296875 2 529.837665 1057.66078 NaN NaN NaN NaN NaN NaN NaN 9.7319 1 9.7319 9.2319 10.232 0 0 0 0 0.21486 1 1157 1157 0.69038 0 1 + 25775 23197 16995 17001 25471 25471 0.13425400013943545 LEKKKKKKKI 10 Unmodified _LEKKKKKKKI_ 0 0 0 REV__ENST00000471326.5_1_1:154245614-154245674:+|nuORF REV__ENST00000471326.5_1_1:154245614-154245674:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 424.3027648925781 3 424.302619 1269.88603 NaN NaN NaN NaN NaN NaN NaN 99.239 1 95.106 94.606 95.606 -4.1326 0 0 0 0.22588 1 19492 19492 1.9064 1.4519 1 + 25776 22037 16996 17002 25472 25472 0.2618792948412647 LEKKKRWKWHE 11 Unmodified _LEKKKRWKWHE_ 0 0 0 REV__ENST00000568686.1_1_3:44161580-44161658:+|nuORF REV__ENST00000568686.1_1_3:44161580-44161658:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.68115234375 3 523.300048 1566.87832 -0.42554 -0.00022268 3.3989 0.0017786 2.9733 0.0015559 523.3005758811945 114.91 0.17875 110.36 110.22 110.4 -4.555 5 4 2 0 0 0 0.96216 1 22057 22057 1.3296 0.87513 1 1387900 + 25777 23145 16997 17003 25473 25473 0.11755170216565602 LEKKLKKK 8 Unmodified _LEKKLKKK_ 0 0 0 REV__ENSG00000165632|ENST00000344293|TAF3 REV__ENSG00000165632|ENST00000344293|TAF3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 507.9267272949219 2 507.855327 1013.6961 NaN NaN NaN NaN NaN NaN NaN 151.72 1 151.72 151.22 152.22 0 0 0 0 0.21486 1 30389 30389 0.6015 0 1 + 25778 17787 16998 17004 25474 25474 0.18980062541754705 LEKKMAYHLQ 10 Unmodified _LEKKMAYHLQ_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant;FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.76123046875 2 630.842091 1259.66963 NaN NaN NaN NaN NaN NaN NaN 68.225 1 64.689 64.189 65.189 -3.5362 0 0 0 0.22588 1 12816 12816 8.1555 1.0538 1 25779 7191 16999 17005 25475 25475 0.05018005588112828 LEKKNEEVY 9 Unmodified _LEKKNEEVY_ 0 0 0 REV__tr|U7T6Q4|U7T6Q4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00163PE=3SV=1 REV__tr|U7T6Q4|U7T6Q4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00163PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3273315429688 2 576.300778 1150.587 NaN NaN NaN NaN NaN NaN NaN 79.481 1 75.805 75.305 76.305 -3.676 0 0 0 0.23508 1 15143 15143 10.824 0 1 + 25780 25452 17000 17006 25476 25476 0.017733870609617952 LEKKQGGF 8 Unmodified _LEKKQGGF_ 0 0 0 REV__ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant REV__ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.755615234375 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 126.45 1 121.84 121.34 122.34 -4.6172 0 0 0 0.21452 1 24931 24931 13.508 0.97634 1 + 25781 12895 17001 17007 25477 25477 0.04053802243061 LEKKQRLR 8 Unmodified _LEKKQRLR_ 0 0 0 REV__ENSG00000120051|ENST00000369704|CFAP58 REV__ENSG00000120051|ENST00000369704|CFAP58 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.564697265625 3 357.564614 1069.67201 NaN NaN NaN NaN NaN NaN NaN 14.985 1 13.871 13.371 14.371 -1.1142 0 0 0 0.21486 1 2284 2284 10.074 2.1285 1 + 25782 15607 17002 17008 25478 25478 0.13996222108062284 LEKLLQDAY 9 Unmodified _LEKLLQDAY_ 0 0 0 ENSG00000105613|ENST00000251472|MAST1;MAST1|p.E250D|1|0.33|ENSG00000105613|chr19:12848033-12848033|G/T|missense_variant;MAST1|p.R284Afs*33|1|0.07|ENSG00000105613|chr19:12852009-12852009|C/-|frameshift_variant;MAST1|p.K404Rfs*7|1|0.41|ENSG00000105613|chr19:12858580-12858580|A/-|frameshift_variant ENSG00000105613|ENST00000251472|MAST1 ENSG00000105613|ENST00000251472|MAST1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.789306640625 2 546.800414 1091.58628 0.47806 0.00026141 0.39937 0.00021838 0.87744 0.00047978 546.8001278597562 119.91 0.7003 115.39 114.98 115.68 -4.5221 55 19 4 0 0 0 0.69259 1 23591 23591 6.7232 1.4925 1 10815000 25783 2322 17003 17009 25479 25479 0.04414592411899321 LEKLQPAY 8 Unmodified _LEKLQPAY_ 0 0 0 nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D nc|ENSG00000143486|P41214-2|EIF2D nc|ENSG00000143486|P41214-2|EIF2D MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7726745605469 2 481.271293 960.528032 -0.31925 -0.00015365 0.36749 0.00017686 0.048235 2.3214E-05 481.27146370585467 62.677 0.66695 62.677 62.242 62.909 0 29 18 2 0 0 0 0.069961 2 12057 12006;12057 69.105 19.551 1 3171400 25784 4495 17004 17010 25480;25481 25481 0.04618955557270965 LEKLQPAY 8 Unmodified _LEKLQPAY_ 0 0 0 nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D nc|ENSG00000143486|P41214-2|EIF2D nc|ENSG00000143486|P41214-2|EIF2D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77252197265625 2 481.271293 960.528032 0.037653 1.8121E-05 0.74297 0.00035757 0.78063 0.00037569 481.27163721412944 65.895 0.74491 62.848 62.446 63.191 -3.047 41 21 3 0 0 0 0.089098 4 12760 12690;12711;12739;12760 65.235 16.889 1 2511500 25785 4495 17004 17010 25482;25483;25484;25485 25485 0.04618955557270965 LEKLQPAY 8 Unmodified _LEKLQPAY_ 0 0 0 nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D nc|ENSG00000143486|P41214-2|EIF2D nc|ENSG00000143486|P41214-2|EIF2D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77239990234375 2 481.271293 960.528032 0.2889 0.00013904 0.4165 0.00020045 0.7054 0.00033949 481.27142607536615 66.268 0.80238 62.772 62.417 63.219 -3.4965 42 22 3 0 0 0 0.069961 3 12380 12380;12381;12409 69.105 19.551 1 1423800 25786 4495 17004 17010 25486;25487;25488 25486 0.04618955557270965 LEKLQPAY 8 Unmodified _LEKLQPAY_ 0 0 0 nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D nc|ENSG00000143486|P41214-2|EIF2D nc|ENSG00000143486|P41214-2|EIF2D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7729797363281 2 481.271293 960.528032 0.24258 0.00011675 0.52078 0.00025064 0.76336 0.00036738 481.2714692498955 65.951 0.87724 62.668 62.368 63.246 -3.2832 45 24 3 0 0 0 0.036524 4 12424 12396;12407;12409;12424 99.799 31.232 1 3104200 25787 4495 17004 17010 25489;25490;25491;25492 25492 0.04618955557270965 LEKMFRVNL 9 Unmodified _LEKMFRVNL_ 0 0 0 nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO;ENSG00000067445|ENST00000173898|TRO;ENST00000492706.5_1_X:54951111-54953173:+|nuORF;nc|ENSG00000067445|Q12816-5|TRO;nc|ENSG00000067445|Q12816-2|TRO;TRO|p.S1034Rfs*10|1|0.07|ENSG00000067445|chrX:54929826-54929826|C/-|frameshift_variant nc|ENSG00000067445|Q12816-3|TRO nc|ENSG00000067445|Q12816-3|TRO MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.318603515625 2 575.326076 1148.6376 0.18797 0.00010814 -3.3377 -0.0019203 -3.1498 -0.0018121 575.3236380818652 163.52 0.54771 158.73 158.34 158.88 -4.7898 27 15 3 0 0 0 0.072678 1 32559 32559 2.6312 0 1 13643000 25788 1390 17005 17011 25493 25493 0.06922637904972362 LEKQKRKKRRN 11 Unmodified _LEKQKRKKRRN_ 0 0 0 REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3971557617188 2 742.468232 1482.92191 NaN NaN NaN NaN NaN NaN NaN 168.44 1 168.44 167.94 168.94 0 0 0 0 0.2367 1 34496 34496 2.9952 1.5133 1 + 25789 19286 17006 17012 25494 25494 0.19976779713670112 LEKQLVSVSNK 11 Unmodified _LEKQLVSVSNK_ 0 0 0 ENST00000376946.2_1_10:22209591-22217997:-|nuORF ENST00000376946.2_1_10:22209591-22217997:-|nuORF ENST00000376946.2_1_10:22209591-22217997:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.775146484375 2 622.864077 1243.7136 NaN NaN NaN NaN NaN NaN NaN 169.28 1 164.49 163.99 164.99 -4.7898 0 0 0 0.20951 1 34282 34282 16.566 0.41677 1 25790 9257 17007 17013 25495 25495 0.10149313286092365 LEKRFNNI 8 Unmodified _LEKRFNNI_ 0 0 0 REV__tr|U7SE90|U7SE90_FUSNUCRISPRsystemCmsendoribonucleaseCsm3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02353PE=3SV=1 REV__tr|U7SE90|U7SE90_FUSNUCRISPRsystemCmsendoribonucleaseCsm3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02353PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 517.2957763671875 2 517.293091 1032.57163 NaN NaN NaN NaN NaN NaN NaN 136.12 1 136.12 135.62 136.62 0 0 0 0 0.21486 1 26969 26969 12.532 3.1841 1 + 25791 24841 17008 17014 25496 25496 0.05664565054416926 LEKRRQHL 8 Unmodified _LEKRRQHL_ 0 0 0 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20257568359375 3 360.552597 1078.63596 0.16384 5.9074E-05 -0.019618 -7.0733E-06 0.14422 5.2001E-05 360.5525292599865 35.318 0.62304 33.065 32.743 33.366 -2.2527 48 17 4 0 0 0 0.41395 1 6193 6193 36.127 10.728 1 9816700 + 25792 17640 17009 17015 25497 25497 0.0997876493122476 LEKRRQHL 8 Unmodified _LEKRRQHL_ 0 0 0 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2129211425781 3 360.552597 1078.63596 -0.3627 -0.00013077 0.37 0.0001334 0.0072972 2.631E-06 360.55271099551936 35.264 0.69298 32.988 32.659 33.352 -2.2766 61 19 4 0 0 0 0.24385 1 6198 6198 49.933 11.959 1 8906600 + 25793 17640 17009 17015 25498 25498 0.0997876493122476 LEKRRQHL 8 Unmodified _LEKRRQHL_ 0 0 0 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 360.552597 1078.63596 -0.23271 -8.3906E-05 0.42043 0.00015159 0.18771 6.7681E-05 360.5527071732842 32.971 0.52496 32.971 32.746 33.271 0 -0.02965 5.9669E-05 NaN 49.933 40 14 3 NaN NaN NaN NaN 0 NaN NaN 0 11865000 + 25794 17640 17009 17015 0.0997876493122476 LEKRRQHL 8 Unmodified _LEKRRQHL_ 0 0 0 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 360.552597 1078.63596 -0.5647 -0.0002036 0.58379 0.00021049 0.019094 6.8846E-06 360.55279881611915 35.372 0.67613 32.978 32.705 33.381 -2.3938 -0.022449 0.00023637 NaN 49.933 55 18 4 NaN NaN NaN NaN 0 NaN NaN 0 11953000 + 25795 17640 17009 17015 0.0997876493122476 LEKRYWLLNAQ 11 Unmodified _LEKRYWLLNAQ_ 0 0 0 USP32|p.K207N|1|0.41|ENSG00000170832|chr17:60271432-60271432|C/G|missense_variant USP32|p.K207N|1|0.41|ENSG00000170832|chr17:60271432-60271432|C/G|missense_variant USP32|p.K207N|1|0.41|ENSG00000170832|chr17:60271432-60271432|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7361145019531 3 478.601504 1432.78268 NaN NaN NaN NaN NaN NaN NaN 39.413 1 39.413 38.913 39.913 0 0 0 0 0.22632 1 7317 7317 0.026206 0.02025 1 25796 26560 17010 17016 25499 25499 0.08360397305682454 LEKTLKLIDS 10 Unmodified _LEKTLKLIDS_ 0 0 0 tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1 tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1 tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7199401855469 3 387.23594 1158.68599 NaN NaN NaN NaN NaN NaN NaN 157.37 1 152.58 152.08 153.08 -4.7885 0 0 0 2.8426 1 31296 31296 0.26539 0 1 25797 25981 17011 17017 25500 25500 0.11299410025867473 LEKTSNNTG 9 Unmodified _LEKTSNNTG_ 0 0 0 ENSG00000158683|ENST00000289672|PKD1L1 ENSG00000158683|ENST00000289672|PKD1L1 ENSG00000158683|ENST00000289672|PKD1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.765625 2 482.240721 962.466889 NaN NaN NaN NaN NaN NaN NaN 109.85 1 109.85 109.35 110.35 0 0 0 0 0.23508 1 21601 21601 10.824 2.9138 1 25798 5177 17012 17018 25501 25501 -0.015846012128008624 LEKVPVLLAL 10 Unmodified _LEKVPVLLAL_ 0 0 0 REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7666625976562 2 547.862818 1093.71108 NaN NaN NaN NaN NaN NaN NaN 120.9 1 116.21 115.71 116.71 -4.6873 0 0 0 0.22588 1 23209 23209 3.2813 0 1 + 25799 24049 17013 17019 25502 25502 0.16797509619073026 LEKVWKKL 8 Unmodified _LEKVWKKL_ 0 0 0 REV__ENSG00000168461|ENST00000578921|RAB31 REV__ENSG00000168461|ENST00000578921|RAB31 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2734375 2 522.334227 1042.6539 NaN NaN NaN NaN NaN NaN NaN 112.71 1 108.43 107.93 108.93 -4.2725 0 0 0 0.21486 1 21702 21702 2.5775 0 1 + 25800 18027 17014 17020 25503 25503 0.13428087133388544 LEKWVTLSH 9 Unmodified _LEKWVTLSH_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-3|WDR81 REV__nc|ENSG00000167716|Q562E7-3|WDR81 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 556.5400390625 2 556.808574 1111.60259 0.35105 0.00019547 4.0023 0.0022285 4.3533 0.002424 557.3147673439686 144.49 0.44824 139.55 139.34 139.79 -4.9445 17 12 2 0 0 0 0.59847 1 27937 27937 0.12781 0.11455 1 2854900 + 25801 17961 17015 17021 25504 25504 0.051257183686630015 LEKYIIEEL 9 Unmodified _LEKYIIEEL_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3171997070312 2 575.323722 1148.63289 0.29925 0.00017217 0.30598 0.00017604 0.60523 0.0003482 575.3237343967351 158.86 0.80276 158.86 158.5 159.3 0 52 22 3 0 0 0 0.33512 1 31857 31857 14.987 0 1 10402000 25802 7253 17016 17022 25505 25505 0.0645203224321449 LEKYNEMNLLI 11 Unmodified _LEKYNEMNLLI_ 0 0 0 tr|U7SGW6|U7SGW6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02193PE=4SV=1 tr|U7SGW6|U7SGW6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02193PE=4SV=1 tr|U7SGW6|U7SGW6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02193PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2379150390625 3 460.579489 1378.71664 NaN NaN NaN NaN NaN NaN NaN 119.51 1 114.98 114.48 115.48 -4.5221 0 0 0 0.23698 1 23566 23566 2.6312 0.19645 1 25803 25906 17017 17023 25506 25506 0.042428203485997074 LEKYRAFMVRR 11 Unmodified _LEKYRAFMVRR_ 0 0 0 REV__ENSG00000004534|ENST00000266022|RBM6 REV__ENSG00000004534|ENST00000266022|RBM6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2657775878906 3 490.278367 1467.81327 NaN NaN NaN NaN NaN NaN NaN 90.297 1 86.438 85.938 86.938 -3.8595 0 0 0 0.22632 1 17666 17666 0.03141 0 1 + 25804 13837 17018 17024 25507 25507 0.09807852419021401 LELCRRLY 8 Unmodified _LELCRRLY_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2608642578125 2 533.297319 1064.58008 NaN NaN NaN NaN NaN NaN NaN 146.15 1 141.46 140.96 141.96 -4.6868 0 0 0 0.21486 1 28985 28985 9.3474 0 1 25805 1518 17019 17025 25508 25508 0.05037795699399794 LELDAPGWF 9 Unmodified _LELDAPGWF_ 0 0 0 nc|ENSG00000075340|P35612-4|ADD2;nc|ENSG00000075340|P35612-7|ADD2;nc|ENSG00000075340|P35612-6|ADD2 nc|ENSG00000075340|P35612-4|ADD2 nc|ENSG00000075340|P35612-4|ADD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6846923828125 2 524.260925 1046.5073 -0.34852 -0.00018272 -0.14856 -7.7882E-05 -0.49708 -0.0002606 524.2611044642805 97.384 0.20322 93.149 93.018 93.221 -4.2348 7 5 2 0 0 0 0.8319 1 18605 18605 12.532 8.5872 1 848750 25806 12234 17020 17026 25509 25509 -0.014096348223802124 LELEKNHRL 9 Unmodified _LELEKNHRL_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ADAM33|p.A455Pfs*14|1|0.31|ENSG00000149451|chr20:3672575-3672575|C/-|frameshift_variant nc|ENSG00000149451|Q9BZ11-2|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3280029296875 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 110.35 1 105.97 105.47 106.47 -4.3776 0 0 0 0.23508 1 21749 21749 10.074 2.1638 1 25807 4792 17021 17027 25510 25510 0.07655908145943613 LELEMERLQKK 11 Unmodified _LELEMERLQKK_ 0 0 0 REV__nc|ENSG00000152061|B7ZAP0|RABGAP1L REV__nc|ENSG00000152061|B7ZAP0|RABGAP1L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 708.912353515625 2 708.897594 1415.78064 NaN NaN NaN NaN NaN NaN NaN 166.46 1 161.67 161.17 162.17 -4.7898 0 0 0 0.23379 1 33448 33448 5.2969 0 1 + 25808 17091 17022 17028 25511 25511 0.0893760050551009 LELEPGAGL 9 Unmodified _LELEPGAGL_ 0 0 0 ENSG00000183615|ENST00000373582|FAM167B;COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant;COL18A1|p.G746Afs*3|1|0.14|ENSG00000182871|chr21:45477470-45477470|G/-|frameshift_variant;COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1 ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 450.11724853515625 2 449.74765 897.480748 0.21889 9.8444E-05 -0.17567 -7.9009E-05 0.043213 1.9435E-05 449.74750863955444 115.8 1.5001 115.8 114.96 116.46 0 92 42 3 0 0 0 0.66537 1 22624 22624 8.5933 0 1 6996400 25809 6856 17023 17029 25512 25512 0.027906762862812684 LELEPGAGL 9 Unmodified _LELEPGAGL_ 0 0 0 ENSG00000183615|ENST00000373582|FAM167B;COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant;COL18A1|p.G746Afs*3|1|0.14|ENSG00000182871|chr21:45477470-45477470|G/-|frameshift_variant;COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1 ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 449.74765 897.480748 0.1594 7.169E-05 -0.090369 -4.0643E-05 0.069031 3.1046E-05 449.74754291837405 120.29 1.2229 115.77 115.15 116.38 -4.5221 -0.036335 7.2818E-05 NaN 8.5933 87 34 3 NaN NaN NaN NaN 0 NaN NaN 0 7304300 25810 6856 17023 17029 0.027906762862812684 LELEPGAGL 9 Unmodified _LELEPGAGL_ 0 0 0 ENSG00000183615|ENST00000373582|FAM167B;COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant;COL18A1|p.G746Afs*3|1|0.14|ENSG00000182871|chr21:45477470-45477470|G/-|frameshift_variant;COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1 ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.74765 897.480748 0.57176 0.00025715 -0.36891 -0.00016592 0.20285 9.1231E-05 449.7474110697698 120.48 1.4383 115.84 115.1 116.53 -4.645 0.035204 -0.00017773 NaN 8.5933 101 40 3 NaN NaN NaN NaN 0 NaN NaN 0 7654100 25811 6856 17023 17029 0.027906762862812684 LELEPGAGL 9 Unmodified _LELEPGAGL_ 0 0 0 ENSG00000183615|ENST00000373582|FAM167B;COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant;COL18A1|p.G746Afs*3|1|0.14|ENSG00000182871|chr21:45477470-45477470|G/-|frameshift_variant;COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1 ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 449.74765 897.480748 0.29761 0.00013385 -0.058307 -2.6223E-05 0.2393 0.00010763 449.74754902077945 120.27 1.2617 115.8 115.19 116.46 -4.467 -0.00059378 0.00010166 NaN 8.5933 99 35 4 NaN NaN NaN NaN 0 NaN NaN 0 7978600 25812 6856 17023 17029 0.027906762862812684 LELEQTYQA 9 Unmodified _LELEQTYQA_ 0 0 0 LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant;ENSG00000176619|ENST00000325327|LMNB2 LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.772216796875 2 547.771854 1093.52915 0.10483 5.7421E-05 -0.035156 -1.9257E-05 0.06967 3.8163E-05 547.7716920366985 89.351 0.5246 85.558 85.304 85.828 -3.7926 23 14 2 0 0 0 0.42844 1 17454 17454 24.021 5.8742 1 1934500 25813 6476 17024 17030 25513 25513 -0.013868748644881634 LELEQTYQA 9 Unmodified _LELEQTYQA_ 0 0 0 LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant;ENSG00000176619|ENST00000325327|LMNB2 LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 547.771854 1093.52915 0.27424 0.00015022 -0.28541 -0.00015634 -0.011166 -6.1165E-06 547.7717131488354 89.334 0.66822 85.556 85.103 85.771 -3.7779 0.0034207 -0.00011604 NaN 24.021 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1668300 25814 6476 17024 17030 -0.013868748644881634 LELEVHYYN 9 Unmodified _LELEVHYYN_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.261962890625 2 590.287671 1178.56079 NaN NaN NaN NaN NaN NaN NaN 131.15 1 126.31 125.81 126.81 -4.8355 0 0 0 0.23508 1 25184 25184 7.2892 0.56607 1 25815 12546 17025 17031 25514 25514 -0.021348821104993476 LELFSFWRIWS 11 Unmodified _LELFSFWRIWS_ 0 0 0 nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR nc|ENSG00000103429|Q9NZS9-2|BFAR nc|ENSG00000103429|Q9NZS9-2|BFAR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3750610351562 2 742.390262 1482.76597 NaN NaN NaN NaN NaN NaN NaN 171.27 1 171.27 170.77 171.77 0 0 0 0 0.23018 1 35270 35270 8.1555 1.0538 1 25816 2191 17026 17032 25515 25515 0.04389896419706929 LELFSFWRIWS 11 Unmodified _LELFSFWRIWS_ 0 0 0 nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR nc|ENSG00000103429|Q9NZS9-2|BFAR nc|ENSG00000103429|Q9NZS9-2|BFAR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3890380859375 2 742.390262 1482.76597 NaN NaN NaN NaN NaN NaN NaN 147.96 1 143.25 142.75 143.75 -4.7095 0 0 0 0.22632 1 29376 29376 0.026206 0 1 25817 2191 17026 17032 25516 25516 0.04389896419706929 LELGFSARS 9 Unmodified _LELGFSARS_ 0 0 0 REV__ENST00000490092.1_1_7:149571926-149575857:+|nuORF REV__ENST00000490092.1_1_7:149571926-149575857:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2688293457031 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 146.74 1 141.74 141.24 142.24 -5 0 0 0 0.1756 1 28399 28399 7.4771 4.834 1 + 25818 22302 17027 17033 25517 25517 0.02332883409144415 LELIEGFML 9 Unmodified _LELIEGFML_ 0 0 0 nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL nc|ENSG00000292339|O95671-3|ASMTL nc|ENSG00000292339|O95671-3|ASMTL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2864379882812 2 532.788461 1063.56237 0.76998 0.00041024 3.8562 0.0020545 4.6262 0.0024648 532.7901848411453 106.73 0.38631 102.64 102.4 102.78 -4.0913 17 10 2 0 0 0 0.1793 1 20484 20484 39.957 0.0076237 1 930720 25819 5963 17028 17034 25518 25518 0.03313035653877705 LELIKIFYL 9 Unmodified _LELIKIFYL_ 0 0 0 REV__ENSG00000115232|ENST00000397033|ITGA4 REV__ENSG00000115232|ENST00000397033|ITGA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3370361328125 2 576.357368 1150.70018 NaN NaN NaN NaN NaN NaN NaN 107.36 1 103.23 102.73 103.73 -4.135 0 0 0 0.23508 1 20649 20649 8.5933 0 1 + 25820 15412 17029 17035 25519 25519 0.13086107244816958 LELISIEMF 9 Unmodified _LELISIEMF_ 0 0 0 ENST00000325795.7_1_2:190636482-190636527:-|nuORF ENST00000325795.7_1_2:190636482-190636527:-|nuORF ENST00000325795.7_1_2:190636482-190636527:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7930908203125 2 547.793743 1093.57293 NaN NaN NaN NaN NaN NaN NaN 168.85 1 164.06 163.56 164.56 -4.7898 0 0 0 0.23508 1 34160 34160 12.532 0 1 25821 8740 17030 17036 25520 25520 0.029890183082898147 LELIWDRLYF 10 Unmodified _LELIWDRLYF_ 0 0 0 REV__nc|ENSG00000172508|A5YM72-2|CARNS1 REV__nc|ENSG00000172508|A5YM72-2|CARNS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 684.3809204101562 2 684.371538 1366.72852 NaN NaN NaN NaN NaN NaN NaN 171.12 1 166.33 165.83 166.83 -4.7898 0 0 0 0.22588 1 34771 34771 5.7319 0.32914 1 + 25822 18290 17031 17037 25521 25521 0.05982805154098969 LELLLKQKKF 10 Unmodified _LELLLKQKKF_ 0 0 0 REV__ENSG00000101464|ENST00000217446|PIGU REV__ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7503662109375 2 630.407924 1258.80129 0.58023 0.00036578 -0.14794 -9.3265E-05 0.43229 0.00027252 630.4077904153177 90.661 0.6254 86.617 86.306 86.931 -4.0443 40 17 3 0 0 0 0.75565 1 17217 17217 3.9444 0 1 4621300 + 25823 14791 17032 17038 25522 25522 0.18224558947486003 LELMDTLLQE 10 Unmodified _LELMDTLLQE_ 0 0 0 REV__FAM151A|p.R534Gfs*18|1|0.3|ENSG00000162391|chr1:54609426-54609426|G/-|frameshift_variant REV__FAM151A|p.R534Gfs*18|1|0.3|ENSG00000162391|chr1:54609426-54609426|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2836303710938 2 602.810122 1203.60569 0.65313 0.00039371 2.2998 0.0013863 2.9529 0.00178 602.8114101364496 67.826 0.35704 64.33 64.096 64.453 -3.4965 15 9 2 0 0 0 0.84281 1 12686 12686 5.7319 0 1 1247400 + 25824 17492 17033 17039 25523 25523 0.0120318064048206 LELQKNAF 8 Unmodified _LELQKNAF_ 0 0 0 REV__HECW2|p.R1017Gfs*19|1|0.33|ENSG00000138411|chr2:196278614-196278614|G/-|frameshift_variant REV__HECW2|p.R1017Gfs*19|1|0.33|ENSG00000138411|chr2:196278614-196278614|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7681579589844 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 130.83 1 126.06 125.56 126.56 -4.7725 0 0 0 0.20462 1 25184 25184 21.747 3.6117 1 + 25825 16459 17034 17040 25524 25524 0.040980714145121055 LELQRFLY 8 Unmodified _LELQRFLY_ 0 0 0 nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2;ENST00000580395.1_1_17:26945751-26946955:-|nuORF;nc|ENSG00000007202|Q14667-3|BLTP2 nc|ENSG00000007202|Q14667-2|BLTP2 nc|ENSG00000007202|Q14667-2|BLTP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2743530273438 2 541.305667 1080.59678 NaN NaN NaN NaN NaN NaN NaN 130.57 1 125.8 125.3 126.3 -4.7725 0 0 0 0.21486 1 25131 25131 12.532 0 1 25826 1017 17035 17041 25525 25525 0.059706198569983826 LELRATLDR 9 Unmodified _LELRATLDR_ 0 0 0 REV__nc|ENSG00000277072|P0CL84-2|STAG3L2 REV__nc|ENSG00000277072|P0CL84-2|STAG3L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78076171875 2 543.81693 1085.61931 0.34238 0.00018619 -2.7081 -0.0014727 -2.3657 -0.0012865 543.8152499231558 157.89 0.13948 157.89 157.8 157.94 0 5 3 2 0 0 0 0.5059 1 31685 31685 19.257 1.1106 1 1605300 + 25827 20858 17036 17042 25526 25526 0.07992219254606425 LELREENTRQE 11 Unmodified _LELREENTRQE_ 0 0 0 nc|ENSG00000166140|Q96K21-4|ZFYVE19;nc|ENSG00000166140|Q96K21-2|ZFYVE19;ENSG00000166140|ENST00000355341|ZFYVE19 nc|ENSG00000166140|Q96K21-4|ZFYVE19 nc|ENSG00000166140|Q96K21-4|ZFYVE19 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 708.7954711914062 2 708.857512 1415.70047 NaN NaN NaN NaN NaN NaN NaN 166.4 1 161.45 160.95 161.95 -4.9484 0 0 0 0.23476 1 32603 32603 4.5289 0.33936 1 25828 5690 17037 17043 25527 25527 0.009248304360426118 LELRSNQAI 9 Unmodified _LELRSNQAI_ 0 0 0 REV__nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P REV__nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2705688476562 2 522.29583 1042.57711 NaN NaN NaN NaN NaN NaN NaN 127.75 1 122.96 122.46 123.46 -4.7958 0 0 0 0.22962 1 24520 24520 14.838 0.93222 1 + 25829 19017 17038 17044 25528 25528 0.057522438462456194 LELSRLARI 9 Unmodified _LELSRLARI_ 0 0 0 ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000021645|Q9Y4C0|NRXN3;NRXN3|p.R369Vfs*8|1|0.3|ENSG00000021645|chr14:78803793-78803793|G/-|frameshift_variant;nc|ENSG00000021645|Q9Y4C0-4|NRXN3;nc|ENSG00000021645|Q9Y4C0-3|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5606689453125 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 82.514 1 78.816 78.316 79.316 -3.6985 0 0 0 0.19657 1 15737 15737 0.029283 0 1 25830 1126 17039 17045 25529 25529 0.1287340001395023 LELVEPHLN 9 Unmodified _LELVEPHLN_ 0 0 0 REV__KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant REV__KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.268798828125 2 532.292756 1062.57096 -0.19664 -0.00010467 -0.04722 -2.5135E-05 -0.24386 -0.0001298 532.292734306061 105.22 0.77666 100.95 100.53 101.31 -4.2638 53 21 3 0 0 0 0.25183 2 20698 20698;20719 34.402 6.7729 1 6230700 + 25831 18848 17040 17046 25530;25531 25530 0.04217725614716983 LELVEPHLN 9 Unmodified _LELVEPHLN_ 0 0 0 REV__KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant REV__KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2659912109375 2 532.292756 1062.57096 0.47582 0.00025328 -0.6149 -0.00032731 -0.13908 -7.4033E-05 532.2923487723357 105.32 0.66221 100.94 100.53 101.19 -4.3764 48 18 3 0 0 0 0.16619 1 20218 20218 41.84 7.4379 1 6723600 + 25832 18848 17040 17046 25532 25532 0.04217725614716983 LELVEPHLN 9 Unmodified _LELVEPHLN_ 0 0 0 REV__KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant REV__KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.292756 1062.57096 0.80779 0.00042998 -0.84249 -0.00044845 -0.0347 -1.8471E-05 532.2923034209008 104.98 0.70955 100.92 100.55 101.26 -4.0543 -0.054567 -0.00025814 NaN 41.84 50 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6734800 + 25833 18848 17040 17046 0.04217725614716983 LEMDVEKGVQP 11 Unmodified _LEMDVEKGVQP_ 0 0 0 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7550659179688 2 622.813196 1243.61184 NaN NaN NaN NaN NaN NaN NaN 169.96 1 169.96 169.46 170.46 0 0 0 0 0.23018 1 34913 34913 8.1555 0 1 25834 12751 17041 17047 25533 25533 -0.0002230112795587047 LEMEEAHDI 9 Unmodified _LEMEEAHDI_ 0 0 0 REV__ENST00000483634.1_1_6:24408642-24418827:+|nuORF REV__ENST00000483634.1_1_6:24408642-24418827:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.782958984375 2 543.742239 1085.46993 NaN NaN NaN NaN NaN NaN NaN 163 1 157.81 157.31 158.31 -5.1878 0 0 0 0.23508 1 31686 31686 7.9102 0 1 + 25835 15781 17042 17048 25534 25534 -0.06939094150311576 LEMKELVDKR 10 Unmodified _LEMKELVDKR_ 0 0 0 REV__ENSG00000100151|ENST00000356976|PICK1 REV__ENSG00000100151|ENST00000356976|PICK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7702026367188 2 630.852655 1259.69076 NaN NaN NaN NaN NaN NaN NaN 173.22 1 168.34 167.84 168.84 -4.881 0 0 0 0.22566 1 34424 34424 16.149 1.7437 1 + 25836 14670 17043 17049 25535 25535 0.0712997089694909 LEMLRRRRRRK 11 Unmodified _LEMLRRRRRRK_ 0 0 0 REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2 REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3956909179688 2 785.488976 1568.9634 NaN NaN NaN NaN NaN NaN NaN 120.39 1 120.39 119.89 120.89 0 0 0 0 0.22632 1 23733 23733 0.00056442 0 1 + 25837 15000 17044 17050 25536 25536 0.20167637201348043 LEMLRRRRRRK 11 Unmodified _LEMLRRRRRRK_ 0 0 0 REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2 REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3931884765625 2 785.488976 1568.9634 NaN NaN NaN NaN NaN NaN NaN 124.63 1 120.03 119.53 120.53 -4.5984 0 0 0 0.22632 1 24579 24579 0.00056442 0 1 + 25838 15000 17044 17050 25537 25537 0.20167637201348043 LEMLRRRRRRK 11 Unmodified _LEMLRRRRRRK_ 0 0 0 REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2 REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3931884765625 2 785.488976 1568.9634 NaN NaN NaN NaN NaN NaN NaN 124.65 1 120.05 119.55 120.55 -4.5984 0 0 0 0.23698 1 24581 24581 1.3295 0.25807 1 + 25839 15000 17044 17050 25538 25538 0.20167637201348043 LEMLRRRRRRK 11 Unmodified _LEMLRRRRRRK_ 0 0 0 REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2 REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3896484375 2 785.488976 1568.9634 NaN NaN NaN NaN NaN NaN NaN 168.73 1 163.86 163.36 164.36 -4.873 0 0 0 0.23698 1 33282 33282 1.3295 1.0605 1 + 25840 15000 17044 17050 25539 25539 0.20167637201348043 LEMLRRRRRRK 11 Unmodified _LEMLRRRRRRK_ 0 0 0 REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2 REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3767700195312 2 785.488976 1568.9634 NaN NaN NaN NaN NaN NaN NaN 173.82 1 168.93 168.43 169.43 -4.8916 0 0 0 0.23698 1 34572 34572 1.1933 0.92432 1 + 25841 15000 17044 17050 25540 25540 0.20167637201348043 LEMMHLAVT 9 Unmodified _LEMMHLAVT_ 0 0 0 REV__ENST00000487904.5_1_2:61408529-61412771:+|nuORF REV__ENST00000487904.5_1_2:61408529-61412771:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2796020507812 2 522.764463 1043.51437 -0.4944 -0.00025846 0.67028 0.0003504 0.17587 9.1941E-05 522.7643223180185 84.294 0.79308 80.384 80.008 80.802 -3.9093 39 22 2 0 0 0 0.74655 1 16028 16028 10.824 0 1 2019200 + 25842 22265 17045 17051 25541 25541 -0.005643615378176037 LEMSTDNYI 9 Unmodified _LEMSTDNYI_ 0 0 0 tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1 tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1 tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7876586914062 2 543.244615 1084.47468 0.63627 0.00034565 -2.4019 -0.0013048 -1.7656 -0.00095915 543.2438346407841 120.89 0.34473 116.2 115.93 116.28 -4.6873 14 9 2 0 0 0 0.77732 1 23174 23174 18.135 3.5533 1 1249000 25843 26221 17046 17052 25542 25542 -0.06418210007541347 LEMTLLPC 8 Unmodified _LEMTLLPC_ 0 0 0 ENST00000473311.5_1_3:183906074-183911483:+|nuORF ENST00000473311.5_1_3:183906074-183911483:+|nuORF ENST00000473311.5_1_3:183906074-183911483:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2345886230469 2 460.235007 918.455461 NaN NaN NaN NaN NaN NaN NaN 55.882 1 52.706 52.206 53.206 -3.1761 0 0 0 0.21323 1 10385 10385 14.582 0 1 25844 10239 17047 17053 25543 25543 -0.007028378321592754 LENELDEDMH 10 Unmodified _LENELDEDMH_ 0 0 0 ENST00000277795.8_1_10:70048686-70066625:-|nuORF;nc|ENSG00000108187|P30039-2|PBLD;ENSG00000108187|ENST00000358769|PBLD ENST00000277795.8_1_10:70048686-70066625:-|nuORF ENST00000277795.8_1_10:70048686-70066625:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.757568359375 2 622.758617 1243.50268 NaN NaN NaN NaN NaN NaN NaN 11.717 1 10.588 10.088 11.088 -1.1293 0 0 0 0.22588 1 1403 1403 1.3295 0.80477 1 25845 2461 17048 17054 25544 25544 -0.10932931818115321 LENGAHAY 8 Unmodified _LENGAHAY_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;DNMT1|p.M337Wfs*8|1|0.2|ENSG00000130816|chr19:10160050-10160050|T/-|frameshift_variant nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2193908691406 2 437.706317 873.398081 0.15515 6.7908E-05 -0.054756 -2.3967E-05 0.10039 4.3941E-05 437.70622785088176 21.076 0.5136 21.076 20.816 21.33 0 37 14 4 0 0 0 0.2945 1 3489 3489 59.795 23.751 1 7445400 25846 3641 17049 17055 25545 25545 -0.043682207218580515 LENGAHAY 8 Unmodified _LENGAHAY_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;DNMT1|p.M337Wfs*8|1|0.2|ENSG00000130816|chr19:10160050-10160050|T/-|frameshift_variant nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.224853515625 2 437.706317 873.398081 0.52456 0.0002296 -0.40728 -0.00017827 0.11728 5.1332E-05 437.70606256861913 22.549 0.61703 21.025 20.611 21.228 -1.5238 42 17 4 0 0 0 0.34033 1 3844 3844 56.541 26.316 1 5234500 25847 3641 17049 17055 25546 25546 -0.043682207218580515 LENGAHAY 8 Unmodified _LENGAHAY_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;DNMT1|p.M337Wfs*8|1|0.2|ENSG00000130816|chr19:10160050-10160050|T/-|frameshift_variant nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 437.706317 873.398081 -0.15424 -6.7513E-05 0.2441 0.00010684 0.089852 3.9329E-05 437.7063688295227 22.448 0.42502 20.995 20.801 21.226 -1.4535 -0.037213 0.00031698 NaN 59.795 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4334200 25848 3641 17049 17055 -0.043682207218580515 LENGLLASV 9 Unmodified _LENGLLASV_ 0 0 0 REV__ENSG00000068024|ENST00000543185|HDAC4 REV__ENSG00000068024|ENST00000543185|HDAC4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23846435546875 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 112.43 1 107.9 107.4 108.4 -4.5259 0 0 0 0.22621 1 21579 21579 15.847 1.0089 1 + 25849 14219 17050 17056 25547 25547 0.04662365177614447 LENIATLCFK 10 Unmodified _LENIATLCFK_ 0 0 0 ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B ENSG00000008869|ENST00000233099|HEATR5B ENSG00000008869|ENST00000233099|HEATR5B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3215942382812 2 576.310092 1150.60563 NaN NaN NaN NaN NaN NaN NaN 107.44 1 103.03 102.53 103.53 -4.4121 0 0 0 0.22588 1 20614 20614 13.042 0.51092 1 25850 1049 17051 17057 25548 25548 0.03635225431139588 LENKKTATLNK 11 Unmodified _LENKKTATLNK_ 0 0 0 REV__CENPI|p.A617T|1|0.43|ENSG00000102384|chrX:101147785-101147785|G/A|missense_variant REV__CENPI|p.A617T|1|0.43|ENSG00000102384|chrX:101147785-101147785|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7633056640625 2 630.369527 1258.7245 0.37411 0.00023582 -2.3517 -0.0014825 -1.9776 -0.0012466 630.870438565154 75.38 0.3167 71.657 71.475 71.792 -3.7227 9 8 2 0 0 0 0.76834 1 14258 14258 7.1017 1.3699 1 1806500 + 25851 13370 17052 17058 25549 25549 0.10548715660388552 LENLESLYLG 10 Unmodified _LENLESLYLG_ 0 0 0 CD180|p.K168Qfs*16|1|0.36|ENSG00000134061|chr5:67184341-67184342|-/G|frameshift_variant;CD180|p.A649Cfs*3|1|0.26|ENSG00000134061|chr5:67182898-67182899|-/A|frameshift_variant;ENSG00000134061|ENST00000256447|CD180 CD180|p.K168Qfs*16|1|0.36|ENSG00000134061|chr5:67184341-67184342|-/G|frameshift_variant CD180|p.K168Qfs*16|1|0.36|ENSG00000134061|chr5:67184341-67184342|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3369750976562 2 575.803154 1149.59175 0.28743 0.0001655 -0.27917 -0.00016075 0.0082581 4.755E-06 575.8029867888541 96.838 0.59189 96.838 96.528 97.119 0 21 16 2 0 0 0 0.26497 1 18999 18999 39.95 8.6814 1 2558600 25852 441 17053 17059 25550 25550 0.02294271203709286 LENLESLYLG 10 Unmodified _LENLESLYLG_ 0 0 0 CD180|p.K168Qfs*16|1|0.36|ENSG00000134061|chr5:67184341-67184342|-/G|frameshift_variant;CD180|p.A649Cfs*3|1|0.26|ENSG00000134061|chr5:67182898-67182899|-/A|frameshift_variant;ENSG00000134061|ENST00000256447|CD180 CD180|p.K168Qfs*16|1|0.36|ENSG00000134061|chr5:67184341-67184342|-/G|frameshift_variant CD180|p.K168Qfs*16|1|0.36|ENSG00000134061|chr5:67184341-67184342|-/G|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 575.803154 1149.59175 0.39363 0.00022665 -0.41845 -0.00024094 -0.024819 -1.4291E-05 575.802840051599 101 0.61429 96.708 96.398 97.012 -4.297 -0.053364 -0.00025173 NaN 39.95 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2935700 25853 441 17053 17059 0.02294271203709286 LENLESLYLG 10 Unmodified _LENLESLYLG_ 0 0 0 CD180|p.K168Qfs*16|1|0.36|ENSG00000134061|chr5:67184341-67184342|-/G|frameshift_variant;CD180|p.A649Cfs*3|1|0.26|ENSG00000134061|chr5:67182898-67182899|-/A|frameshift_variant;ENSG00000134061|ENST00000256447|CD180 CD180|p.K168Qfs*16|1|0.36|ENSG00000134061|chr5:67184341-67184342|-/G|frameshift_variant CD180|p.K168Qfs*16|1|0.36|ENSG00000134061|chr5:67184341-67184342|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.803154 1149.59175 0.36239 0.00020866 -0.21627 -0.00012453 0.14612 8.4134E-05 575.8029831960248 100.76 0.62009 96.771 96.48 97.1 -3.9895 0.0093708 -1.8896E-05 NaN 39.95 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2324200 25854 441 17053 17059 0.02294271203709286 LENLGDQQ 8 Unmodified _LENLGDQQ_ 0 0 0 ENST00000522038.5_1_5:154330418-154335958:+|nuORF ENST00000522038.5_1_5:154330418-154335958:+|nuORF ENST00000522038.5_1_5:154330418-154335958:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2420349121094 2 458.722164 915.429775 0.21066 9.6632E-05 -0.51423 -0.00023589 -0.30357 -0.00013926 458.72187994720304 92.636 0.69801 88.492 88.176 88.874 -4.1435 31 19 3 0 0 0 0.9383 1 17701 17701 13.906 0 1 1767900 25855 10858 17054 17060 25551 25551 -0.03132272758568888 LENLLDHLAE 10 Unmodified _LENLLDHLAE_ 0 0 0 nc|ENSG00000148655|Q9H2I8|LRMDA;ENST00000593699.5_1_10:77643188-78317043:+|nuORF;ENSG00000148655|ENST00000611255|LRMDA nc|ENSG00000148655|Q9H2I8|LRMDA nc|ENSG00000148655|Q9H2I8|LRMDA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 583.8270874023438 2 583.806228 1165.5979 NaN NaN NaN NaN NaN NaN NaN 166.86 1 161.92 161.42 162.42 -4.948 0 0 0 0.22588 1 32762 32762 9.3831 0 1 25856 4754 17055 17061 25552 25552 0.02172789435235245 LENLNKWGL 9 Unmodified _LENLNKWGL_ 0 0 0 PDE4A|p.N378K|1|0.46|ENSG00000065989|chr19:10459432-10459432|C/A|missense_variant;ENST00000586275.1_1_19:10563984-10570204:+|nuORF;nc|ENSG00000065989|P27815-5|PDE4A;ENST00000590407.1_1_19:10569976-10577573:+|nuORF;nc|ENSG00000065989|P27815-4|PDE4A;nc|ENSG00000065989|P27815-3|PDE4A;nc|ENSG00000065989|P27815-6|PDE4A;nc|ENSG00000065989|P27815-2|PDE4A;nc|ENSG00000065989|P27815-7|PDE4A;ENSG00000065989|ENST00000380702|PDE4A PDE4A|p.N378K|1|0.46|ENSG00000065989|chr19:10459432-10459432|C/A|missense_variant PDE4A|p.N378K|1|0.46|ENSG00000065989|chr19:10459432-10459432|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7720336914062 2 543.800749 1085.58694 0.63081 0.00034304 -0.5449 -0.00029631 0.085916 4.6721E-05 543.8002782932863 114.25 0.65788 109.94 109.51 110.17 -4.3135 30 18 2 0 0 0 0.69192 1 21962 21962 20.454 0 1 2669600 25857 1366 17056 17062 25553 25553 0.04757431851635374 LENMPSAEA 9 Unmodified _LENMPSAEA_ 0 0 0 ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2424621582031 2 481.2184 960.422247 -0.021281 -1.0241E-05 0.51796 0.00024925 0.49668 0.00023901 481.2186193273666 53.761 0.81799 53.761 53.354 54.172 0 44 22 3 0 0 0 0.065291 1 10260 10260 82.529 40.69 1 6217700 25858 3770 17057 17063 25554 25554 -0.0595474835049572 LENMPSAEA 9 Unmodified _LENMPSAEA_ 0 0 0 ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25128173828125 2 481.2184 960.422247 -0.099573 -4.7916E-05 0.36191 0.00017416 0.26234 0.00012624 481.2185742562668 56.859 0.76728 53.964 53.578 54.345 -2.8944 50 21 3 0 0 0 0.0048421 1 10904 10904 114.2 61.933 1 13711000 25859 3770 17057 17063 25555 25555 -0.0595474835049572 LENMPSAEA 9 Unmodified _LENMPSAEA_ 0 0 0 ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78778076171875 2 481.2184 960.422247 0.10074 4.8476E-05 0.16896 8.1305E-05 0.26969 0.00012978 481.2184548758859 57.202 0.76257 54.012 53.618 54.381 -3.1895 50 21 3 0 0 0 0.00017171 3 10637 10599;10637;10668 121.53 69.266 1 10387000 25860 3770 17057 17063 25556;25557;25558 25557 -0.0595474835049572 LENMPSAEA 9 Unmodified _LENMPSAEA_ 0 0 0 ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25384521484375 2 481.2184 960.422247 -0.018608 -8.9543E-06 0.29501 0.00014196 0.2764 0.00013301 481.21852138588525 57.164 0.74736 53.988 53.65 54.397 -3.1761 49 20 3 0 0 0 0.00011658 3 10660 10609;10660;10667 125.53 73.261 1 7044200 25861 3770 17057 17063 25559;25560;25561 25560 -0.0595474835049572 LENNTYKHFIY 11 Unmodified _LENNTYKHFIY_ 0 0 0 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2408752441406 3 481.241865 1440.70376 -0.2075 -9.9858E-05 -0.066028 -3.1776E-05 -0.27353 -0.00013163 481.2418697265487 70.244 0.91811 70.244 69.814 70.732 0 37 25 2 0 0 0 0.77537 2 13541 13541;13676 6.6235 0 1 3028700 25862 26100 17058 17064 25562;25563 25562 0.0010412528069991822 LENNTYKHFIY 11 Unmodified _LENNTYKHFIY_ 0 0 0 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24176025390625 3 481.241865 1440.70376 0.22682 0.00010916 -0.22184 -0.00010676 0.0049872 2.4E-06 481.24186507049046 74.16 1.149 70.483 69.614 70.763 -3.6764 45 32 2 0 0 0 0.75092 1 13991 13991 8.2864 1.663 1 1690200 25863 26100 17058 17064 25564 25564 0.0010412528069991822 LENNTYKHFIY 11 Unmodified _LENNTYKHFIY_ 0 0 0 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2418518066406 3 481.241865 1440.70376 0.30889 0.00014865 -0.45844 -0.00022062 -0.14954 -7.1967E-05 481.2417715126485 74.138 1.0229 70.544 69.758 70.781 -3.594 73 28 3 0 0 0 0.7859 1 14082 14082 5.5233 1.4067 1 3378500 25864 26100 17058 17064 25565 25565 0.0010412528069991822 LENQIAQLN 9 Unmodified _LENQIAQLN_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2811279296875 2 521.780013 1041.54547 -0.18379 -9.5899E-05 0.3319 0.00017318 0.1481 7.7277E-05 521.7801201206489 63.831 0.63006 60.834 60.555 61.186 -2.9975 44 17 3 0 0 0 0.17935 1 12310 12310 39.95 0 1 6650900 25865 3001 17059 17065 25566 25566 0.026362510922808724 LENQIAQLN 9 Unmodified _LENQIAQLN_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2811889648438 2 521.780013 1041.54547 -0.52197 -0.00027235 0.74213 0.00038723 0.22016 0.00011488 521.7803975507297 64.377 0.70448 60.919 60.52 61.225 -3.4581 45 19 3 0 0 0 0.15214 2 12007 12007;12065 43.858 7.7313 1 5647100 25866 3001 17059 17065 25567;25568 25567 0.026362510922808724 LENSVTLGP 9 Unmodified _LENSVTLGP_ 0 0 0 C1R|p.E562D|1|0.04|ENSG00000159403|chr12:7080964-7080964|C/A|missense_variant;nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R C1R|p.E562D|1|0.04|ENSG00000159403|chr12:7080964-7080964|C/A|missense_variant C1R|p.E562D|1|0.04|ENSG00000159403|chr12:7080964-7080964|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25177001953125 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 44.222 1 44.222 43.722 44.722 0 0 0 0 0.23508 1 8291 8291 10.824 0.75 1 25867 350 17060 17066 25569 25569 0.019457747979686246 LENTVADPG 9 Unmodified _LENTVADPG_ 0 0 0 nc|ENSG00000171401|P13646-2|KRT13 nc|ENSG00000171401|P13646-2|KRT13 nc|ENSG00000171401|P13646-2|KRT13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23291015625 2 458.224539 914.434526 0.42607 0.00019524 -0.36783 -0.00016855 0.058242 2.6688E-05 458.22429713414226 32.841 0.62785 30.625 30.316 30.944 -2.2158 28 17 2 0 0 0 0.5059 1 5653 5653 19.257 0 1 808500 25868 12460 17061 17067 25570 25570 -0.026113886158100286 LENVTTENLVK 11 Unmodified _LENVTTENLVK_ 0 0 0 JRKL|p.E429V|1|0.06|ENSG00000183340|chr11:96391935-96391935|A/T|missense_variant JRKL|p.E429V|1|0.06|ENSG00000183340|chr11:96391935-96391935|A/T|missense_variant JRKL|p.E429V|1|0.06|ENSG00000183340|chr11:96391935-96391935|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7794799804688 2 630.345717 1258.67688 0.96716 0.00060965 -3.7068 -0.0023366 -2.7397 -0.0017269 630.8441949924785 80.883 0.38026 77.326 77.095 77.475 -3.557 13 10 2 0 0 0 0.74078 1 15790 15790 8.9762 2.7705 1 1165200 25869 11973 17062 17068 25571 25571 0.0578901666949605 LEPHFYLY 8 Unmodified _LEPHFYLY_ 0 0 0 nc|ENSG00000048052|Q9UKV0-4|HDAC9 nc|ENSG00000048052|Q9UKV0-4|HDAC9 nc|ENSG00000048052|Q9UKV0-4|HDAC9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2661743164062 2 541.271293 1080.52803 0.026407 1.4293E-05 3.032 0.0016411 3.0584 0.0016554 541.7740671922338 52.341 0.38749 49.458 49.17 49.558 -2.8824 20 10 3 0 0 0 0.40947 1 9934 9934 49.669 0.11463 1 1730000 25870 12214 17063 17069 25572 25572 -0.009010444427076436 LEPIFPKI 8 Unmodified _LEPIFPKI_ 0 0 0 REV__tr|U7T5Y4|U7T5Y4_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00017PE=3SV=1 REV__tr|U7T5Y4|U7T5Y4_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00017PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74176025390625 2 478.794404 955.574254 NaN NaN NaN NaN NaN NaN NaN 147.31 1 142.62 142.12 143.12 -4.6868 0 0 0 0.2074 1 29226 29226 19.439 5.9311 1 + 25871 25429 17064 17070 25573 25573 0.09469020459368949 LEPLLLPL 8 Unmodified _LEPLLLPL_ 0 0 0 DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.F2761Lfs*20|1|0.09|ENSG00000187240|chr11:103203742-103203742|T/-|frameshift_variant DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 303.2362976074219 3 303.200278 906.579005 NaN NaN NaN NaN NaN NaN NaN 97.918 1 93.999 93.499 94.499 -3.9194 0 0 0 0.21486 1 18794 18794 1.6526 0 1 25872 900 17065 17071 25574 25574 0.12197904602135168 LEPLNYFKSFR 11 Unmodified _LEPLNYFKSFR_ 0 0 0 REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1 REV__tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 707.3924560546875 2 707.379894 1412.74524 NaN NaN NaN NaN NaN NaN NaN 169.34 1 164.55 164.05 165.05 -4.7898 0 0 0 0.23151 1 34298 34298 7.1017 0.89594 1 + 25873 25249 17066 17072 25575 25575 0.05537306040037038 LEPLSGKY 8 Unmodified _LEPLSGKY_ 0 0 0 ENSG00000139988|ENST00000551171|RDH12 ENSG00000139988|ENST00000551171|RDH12 ENSG00000139988|ENST00000551171|RDH12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.74847412109375 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 38.188 1 35.72 35.22 36.22 -2.4688 0 0 0 0.21486 1 7070 7070 11.64 2.2929 1 25874 4275 17067 17073 25576 25576 0.029309801489034726 LEPPTMEV 8 Unmodified _LEPPTMEV_ 0 0 0 ENSG00000100290|ENST00000216115|BIK ENSG00000100290|ENST00000216115|BIK ENSG00000100290|ENST00000216115|BIK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2383728027344 2 458.228236 914.44192 NaN NaN NaN NaN NaN NaN NaN 138.72 1 134.08 133.58 134.58 -4.6439 0 0 0 0.21452 1 27393 27393 13.508 2.3934 1 25875 1946 17068 17074 25577 25577 -0.018723723397329195 LEPSSPFDRYA 11 Unmodified _LEPSSPFDRYA_ 0 0 0 REV__ATP2B2|p.P685L|1|0.42|ENSG00000157087|chr3:10358773-10358773|G/A|missense_variant REV__ATP2B2|p.P685L|1|0.42|ENSG00000157087|chr3:10358773-10358773|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 641.2235717773438 2 641.309135 1280.60372 NaN NaN NaN NaN NaN NaN NaN 167.58 1 162.79 162.29 163.29 -4.7898 0 0 0 0.23018 1 33815 33815 8.1555 0 1 + 25876 13151 17069 17075 25578 25578 -0.025361120530760672 LEPVRLLLRA 10 Unmodified _LEPVRLLLRA_ 0 0 0 ENSG00000177303|ENST00000321617|CASKIN2;nc|ENSG00000177303|Q8WXE0-2|CASKIN2;CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant ENSG00000177303|ENST00000321617|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.256591796875 2 590.38224 1178.74993 NaN NaN NaN NaN NaN NaN NaN 111.95 1 111.95 111.45 112.45 0 0 0 0 0.22588 1 22024 22024 3.5965 1.5367 1 25877 6506 17070 17076 25579 25579 0.16770234973478182 LEQDHFQVA 9 Unmodified _LEQDHFQVA_ 0 0 0 CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant;CEP295|p.F1469Yfs*47|1|0.31|ENSG00000166004|chr11:93699317-93699318|-/ATCCAGCC|frameshift_variant;CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295 CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7764892578125 2 543.764363 1085.51417 0.28 0.00015225 -0.18506 -0.00010063 0.094939 5.1625E-05 543.7642552767489 66.34 0.58939 62.843 62.558 63.148 -3.4965 38 16 3 0 0 0 0.034893 1 12444 12444 78.06 40.086 1 5083700 25878 494 17071 17077 25580 25580 -0.025163219417891014 LEQDHFQVA 9 Unmodified _LEQDHFQVA_ 0 0 0 CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant;CEP295|p.F1469Yfs*47|1|0.31|ENSG00000166004|chr11:93699317-93699318|-/ATCCAGCC|frameshift_variant;CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295 CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.764363 1085.51417 0.020077 1.0917E-05 -0.073218 -3.9813E-05 -0.053141 -2.8896E-05 543.7643361442113 62.787 0.60332 62.787 62.483 63.086 0 -0.060331 0.00016632 NaN 78.06 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 7076700 25879 494 17071 17077 -0.025163219417891014 LEQDHFQVA 9 Unmodified _LEQDHFQVA_ 0 0 0 CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant;CEP295|p.F1469Yfs*47|1|0.31|ENSG00000166004|chr11:93699317-93699318|-/ATCCAGCC|frameshift_variant;CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295 CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.764363 1085.51417 0.39661 0.00021566 -0.48931 -0.00026607 -0.092697 -5.0405E-05 543.7641447707215 66.161 0.66447 62.878 62.476 63.141 -3.2832 0.03072 -0.00028619 NaN 78.06 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 5392900 25880 494 17071 17077 -0.025163219417891014 LEQEFTEHF 9 Unmodified _LEQEFTEHF_ 0 0 0 nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1 nc|ENSG00000075711|Q12959-8|DLG1 nc|ENSG00000075711|Q12959-8|DLG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2697143554688 2 590.269478 1178.5244 0.72786 0.00042963 -0.40975 -0.00024186 0.31811 0.00018777 590.2692428044999 100.78 0.49672 100.78 100.51 101.01 0 20 13 2 0 0 0 0.04795 3 19797 19750;19797;19804 71.922 39.137 1 1943100 25881 1526 17072 17078 25581;25582;25583 25582 -0.0577175900725706 LEQEFTEHF 9 Unmodified _LEQEFTEHF_ 0 0 0 nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1 nc|ENSG00000075711|Q12959-8|DLG1 nc|ENSG00000075711|Q12959-8|DLG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2695922851562 2 590.269478 1178.5244 0.22231 0.00013122 0.011234 6.6313E-06 0.23354 0.00013785 590.2695587958501 104.92 0.49347 100.7 100.51 101 -4.2183 23 13 2 0 0 0 0.04795 1 20667 20667 71.922 35.795 1 2147800 25882 1526 17072 17078 25584 25584 -0.0577175900725706 LEQEFTEHF 9 Unmodified _LEQEFTEHF_ 0 0 0 nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1 nc|ENSG00000075711|Q12959-8|DLG1 nc|ENSG00000075711|Q12959-8|DLG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.26953125 2 590.269478 1178.5244 0.53507 0.00031584 -0.01397 -8.2459E-06 0.5211 0.00030759 590.2691974158904 105.08 0.41958 100.7 100.49 100.91 -4.3764 17 11 2 0 0 0 0.029716 2 20119 20119;20168 81.89 41.94 1 2035500 25883 1526 17072 17078 25585;25586 25585 -0.0577175900725706 LEQEFTEHF 9 Unmodified _LEQEFTEHF_ 0 0 0 nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1 nc|ENSG00000075711|Q12959-8|DLG1 nc|ENSG00000075711|Q12959-8|DLG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2496337890625 2 590.269478 1178.5244 0.76719 0.00045285 -0.24104 -0.00014228 0.52615 0.00031057 590.2694247534612 104.79 0.45699 100.73 100.52 100.97 -4.0543 26 12 3 0 0 0 0.019872 2 20143 20118;20143 92.491 42.558 1 2216700 25884 1526 17072 17078 25587;25588 25588 -0.0577175900725706 LEQELYSY 8 Unmodified _LEQELYSY_ 0 0 0 REV__tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1 REV__tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2734375 2 522.747847 1043.48114 0.62403 0.00032621 0.74749 0.00039075 1.3715 0.00071696 522.7477676809569 113.03 0.77112 108.75 108.36 109.13 -4.2725 32 21 2 0 0 0 0.99494 1 21702 21702 13.508 4.1604 1 1557500 + 25885 24984 17073 17079 25589 25589 -0.03885948784522952 LEQEWLLR 8 Unmodified _LEQEWLLR_ 0 0 0 REV__WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant REV__WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7767944335938 2 543.800749 1085.58694 0.53192 0.00028926 -1.6351 -0.00088914 -1.1031 -0.00059989 544.3018191020772 107.07 0.099167 107.07 107 107.1 0 4 2 2 0 0 0 0.58432 1 21039 21039 23.148 0 1 778410 + 25886 13960 17074 17080 25590 25590 0.04757431851612637 LEQEWLLR 8 Unmodified _LEQEWLLR_ 0 0 0 REV__WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant REV__WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.800749 1085.58694 0.53192 0.00028926 -1.6351 -0.00088914 -1.1031 -0.00059989 544.3018191020772 107.07 0.099167 107.07 107 107.1 0 0 0 NaN 23.148 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 778410 + 25887 13960 17074 17080 0.04757431851612637 LEQFTNEY 8 Unmodified _LEQFTNEY_ 0 0 0 REV__nc|ENSG00000138434|P28290-3|ITPRID2 REV__nc|ENSG00000138434|P28290-3|ITPRID2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2677001953125 2 522.237647 1042.46074 0.40537 0.0002117 -0.23251 -0.00012142 0.17286 9.0275E-05 522.2374741487287 106.89 0.52281 106.89 106.61 107.13 0 22 14 2 0 0 0 0.96284 1 21043 21043 4.756 0 1 1389500 + 25888 16461 17075 17081 25591 25591 -0.058791194443074346 LEQGQLAR 8 Unmodified _LEQGQLAR_ 0 0 0 PLEKHG2|p.A1300Pfs*59|1|0.52|ENSG00000090924|chr19:39425028-39425028|G/-|frameshift_variant;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;ENSG00000090924|ENST00000425673|PLEKHG2 PLEKHG2|p.A1300Pfs*59|1|0.52|ENSG00000090924|chr19:39425028-39425028|G/-|frameshift_variant PLEKHG2|p.A1300Pfs*59|1|0.52|ENSG00000090924|chr19:39425028-39425028|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24139404296875 2 457.756341 913.498129 0.20363 9.3214E-05 -0.12235 -5.6005E-05 0.081285 3.7209E-05 457.75648986888933 32.52 0.24934 30.493 30.323 30.572 -2.0264 9 6 2 0 0 0 0.08026 1 5631 5631 74.423 16.951 1 393090 25889 1796 17076 17082 25592 25592 0.03792016611953386 LEQGQLAR 8 Unmodified _LEQGQLAR_ 0 0 0 PLEKHG2|p.A1300Pfs*59|1|0.52|ENSG00000090924|chr19:39425028-39425028|G/-|frameshift_variant;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;ENSG00000090924|ENST00000425673|PLEKHG2 PLEKHG2|p.A1300Pfs*59|1|0.52|ENSG00000090924|chr19:39425028-39425028|G/-|frameshift_variant PLEKHG2|p.A1300Pfs*59|1|0.52|ENSG00000090924|chr19:39425028-39425028|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.241943359375 2 457.756341 913.498129 0.43549 0.00019935 -0.49974 -0.00022876 -0.064252 -2.9412E-05 457.75612358983045 32.617 0.24014 30.468 30.316 30.556 -2.1483 10 6 2 0 0 0 0.0942 1 5642 5642 64.236 6.765 1 328210 25890 1796 17076 17082 25593 25593 0.03792016611953386 LEQHDCSF 8 Unmodified _LEQHDCSF_ 0 0 0 REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2763977050781 2 489.702917 977.391281 0.62958 0.00030831 0.0016803 8.2286E-07 0.63126 0.00030913 489.70261189961343 122.5 0.68545 117.82 117.4 118.09 -4.6873 25 19 2 0 0 0 0.93477 1 23495 23495 18.135 1.1927 1 1396800 + 25891 13369 17077 17083 25594 25594 -0.09831901664733778 LEQHDCSF 8 Unmodified _LEQHDCSF_ 0 0 0 REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26983642578125 2 489.702917 977.391281 0.068899 3.374E-05 0.96448 0.00047231 1.0334 0.00050605 489.7030675108868 122.18 0.56944 117.65 117.33 117.9 -4.5305 20 15 2 0 0 0 0.97173 1 23490 23490 18.135 1.1927 1 892930 + 25892 13369 17077 17083 25595 25595 -0.09831901664733778 LEQHEQCQEE 10 Unmodified _LEQHEQCQEE_ 0 0 0 REV__AKAP4|p.E702Qfs*5|1|0.05|ENSG00000147081|chrX:50192610-50192611|-/CTTGG|frameshift_variant REV__AKAP4|p.E702Qfs*5|1|0.05|ENSG00000147081|chrX:50192610-50192611|-/CTTGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 636.7029418945312 2 636.761691 1271.50883 NaN NaN NaN NaN NaN NaN NaN 174.65 1 174.65 174.15 175.15 0 0 0 0 0.22588 1 36164 36164 6.2058 1.4498 1 + 25893 12999 17078 17084 25596 25596 -0.11606413586582676 LEQIERRHA 9 Unmodified _LEQIERRHA_ 0 0 0 REV__nc|ENSG00000111879|Q8NB25-4|FAM184A REV__nc|ENSG00000111879|Q8NB25-4|FAM184A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3182983398438 2 576.317628 1150.6207 NaN NaN NaN NaN NaN NaN NaN 107.49 1 103.17 102.67 103.67 -4.32 0 0 0 0.22962 1 21170 21170 14.838 0 1 + 25894 15268 17079 17085 25597 25597 0.051418533433889024 LEQKVQEVLKA 11 Unmodified _LEQKVQEVLKA_ 0 0 0 GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant;ENSG00000075240|ENST00000406902|GRAMD4 GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 642.9588623046875 2 642.879727 1283.7449 NaN NaN NaN NaN NaN NaN NaN 173.46 1 173.46 172.96 173.96 0 0 0 0 0.23429 1 35872 35872 4.897 0.36815 1 25895 1513 17080 17086 25598 25598 0.11437886320186408 LEQLFQEH 8 Unmodified _LEQLFQEH_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2817993164062 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 85.864 1 82.135 81.635 82.635 -3.7289 0 0 0 0.027494 1 16410 16410 60.074 14.053 1 25896 3916 17081 17087 25599 25599 -0.011194204534831442 LEQLFQEH 8 Unmodified _LEQLFQEH_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2615966796875 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 85.898 1 82.17 81.67 82.67 -3.7289 0 0 0 0.14519 1 16418 16418 38.176 7.539 1 25897 3916 17081 17087 25600 25600 -0.011194204534831442 LEQLFSLF 8 Unmodified _LEQLFSLF_ 0 0 0 REV__tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1 REV__tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 498.7767028808594 2 498.773668 995.532783 NaN NaN NaN NaN NaN NaN NaN 86.837 1 82.887 82.387 83.387 -3.9503 0 0 0 0.22692 1 16536 16536 0.25148 0 1 + 25898 25022 17082 17088 25601 25601 0.034838397000498844 LEQMRKFL 8 Unmodified _LEQMRKFL_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2733764648438 2 532.799694 1063.58484 0.25403 0.00013535 2.1918 0.0011678 2.4459 0.0013032 533.3009078118642 161.3 0.14592 156.51 156.42 156.56 -4.7952 5 3 2 0 0 0 8448 1 32075 32075 1.7423 1.6194 1 1077000 25899 899 17083 17089 25602 25602 0.05558679842170022 LEQPEGSR 8 Unmodified _LEQPEGSR_ 0 0 0 nc|ENSG00000157617|Q9Y426-2|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2;ENSG00000157617|ENST00000380486|C2CD2 nc|ENSG00000157617|Q9Y426-2|C2CD2 nc|ENSG00000157617|Q9Y426-2|C2CD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22918701171875 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 150.86 1 145.63 145.13 146.13 -5.2365 0 0 0 0.21486 1 29237 29237 7.2892 1.5288 1 25900 5132 17084 17090 25603 25603 -0.014885665216525013 LEQREQEL 8 Unmodified _LEQREQEL_ 0 0 0 REV__ENST00000588283.1_2_17:73910154-73910367:-|nuORF REV__ENST00000588283.1_2_17:73910154-73910367:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2706909179688 2 522.769645 1043.52474 0.355 0.00018558 0.14006 7.3218E-05 0.49506 0.0002588 522.769665838502 65.187 0.64224 61.904 61.555 62.197 -3.2832 30 18 2 0 0 0 0.96386 1 12292 12292 14.838 0 1 2058700 + 25901 23291 17085 17091 25604 25604 0.004716607126283634 LEQRTYGL 8 Unmodified _LEQRTYGL_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2647399902344 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 64.822 1 61.539 61.039 62.039 -3.2832 0 0 0 0.22847 1 12176 12176 10.074 0 1 25902 4444 17086 17092 25605 25605 0.023328834091557837 LEQRWKDL 8 Unmodified _LEQRWKDL_ 0 0 0 ENST00000439492.1_1_22:24269897-24270236:+|nuORF ENST00000439492.1_1_22:24269897-24270236:+|nuORF ENST00000439492.1_1_22:24269897-24270236:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77783203125 2 544.298373 1086.58219 0.5526 0.00030078 2.2016 0.0011983 2.7542 0.0014991 544.7999658491495 106.6 0.21224 106.6 106.47 106.68 0 7 5 2 0 0 0 0.96284 1 20946 20946 13.508 0 1 1103200 25903 9874 17087 17093 25606 25606 0.04236547708865146 LEQSILRYG 9 Unmodified _LEQSILRYG_ 0 0 0 ENST00000605613.1_1_1:100133206-100133335:+|nuORF ENST00000605613.1_1_1:100133206-100133335:+|nuORF ENST00000605613.1_1_1:100133206-100133335:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 73.877 1 70.283 69.783 70.783 -3.594 0 0 0 0.23508 1 14025 14025 4.1895 0 1 25904 11734 17088 17094 25607 25607 0.0461712798901317 LEQWRDRKYYL 11 Unmodified _LEQWRDRKYYL_ 0 0 0 REV__NLGN2|p.R704W|1|0.2|ENSG00000169992|chr17:7417401-7417401|C/T|missense_variant REV__NLGN2|p.R704W|1|0.2|ENSG00000169992|chr17:7417401-7417401|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4081420898438 2 785.412257 1568.80996 NaN NaN NaN NaN NaN NaN NaN 166.18 1 166.18 165.68 166.68 0 0 0 0 0.23324 1 33814 33814 5.7319 1.8555 1 + 25905 24364 17089 17095 25608 25608 0.048308808460433283 LEQWRDRKYYL 11 Unmodified _LEQWRDRKYYL_ 0 0 0 REV__NLGN2|p.R704W|1|0.2|ENSG00000169992|chr17:7417401-7417401|C/T|missense_variant REV__NLGN2|p.R704W|1|0.2|ENSG00000169992|chr17:7417401-7417401|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4100341796875 2 785.412257 1568.80996 NaN NaN NaN NaN NaN NaN NaN 173.71 1 168.92 168.42 169.42 -4.7898 0 0 0 0.23698 1 35453 35453 2.2828 0.95324 1 + 25906 24364 17089 17095 25609 25609 0.048308808460433283 LEQWRDRKYYL 11 Unmodified _LEQWRDRKYYL_ 0 0 0 REV__NLGN2|p.R704W|1|0.2|ENSG00000169992|chr17:7417401-7417401|C/T|missense_variant REV__NLGN2|p.R704W|1|0.2|ENSG00000169992|chr17:7417401-7417401|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.396484375 2 785.412257 1568.80996 NaN NaN NaN NaN NaN NaN NaN 174.77 1 169.87 169.37 170.37 -4.8916 0 0 0 0.23087 1 34802 34802 7.609 2.3121 1 + 25907 24364 17089 17095 25610 25610 0.048308808460433283 LEQYCCDHA 9 Unmodified _LEQYCCDHA_ 0 0 0 REV__nc|ENSG00000158786|Q9BZM2|PLA2G2F REV__nc|ENSG00000158786|Q9BZM2|PLA2G2F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2662963867188 2 541.207509 1080.40047 0.14469 7.8308E-05 0.83597 0.00045243 0.98066 0.00053074 541.2079923973641 68.491 0.76204 65.312 64.966 65.728 -3.1796 42 21 3 0 0 0 0.47479 1 13333 13333 30.637 7.4881 1 6830500 + 25908 17346 17090 17096 25611 25611 -0.13651876370727223 LEQYRTEELAQ 11 Unmodified _LEQYRTEELAQ_ 0 0 0 ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B ENSG00000132510|ENST00000448097|KDM6B ENSG00000132510|ENST00000448097|KDM6B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23516845703125 3 460.564896 1378.67286 -0.30578 -0.00014083 0.49296 0.00022704 0.18718 8.6209E-05 460.5650136236166 53.574 0.45465 50.69 50.453 50.908 -2.8837 32 12 4 0 0 0 0.86455 1 10233 10233 4.6037 3.1486 1 3152700 25909 3736 17091 17097 25612 25612 -0.0013307282417827082 LERAENDTP 9 Unmodified _LERAENDTP_ 0 0 0 REV__ENSG00000163820|ENST00000296137|FYCO1 REV__ENSG00000163820|ENST00000296137|FYCO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2701416015625 2 522.751453 1043.48835 0.061346 3.2069E-05 0.74435 0.00038911 0.80569 0.00042118 522.7521361624948 55.684 0.43042 55.684 55.44 55.87 0 23 11 3 0 0 0 0.73268 1 10636 10636 24.021 6.9077 1 1544200 + 25910 17619 17092 17098 25613 25613 -0.03165216184106612 LERAKDELL 9 Unmodified _LERAKDELL_ 0 0 0 REV__ENSG00000080200|ENST00000389622|CRYBG3 REV__ENSG00000080200|ENST00000389622|CRYBG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7821044921875 2 543.811313 1085.60807 0.3348 0.00018207 0.071287 3.8766E-05 0.40609 0.00022083 544.3128044170626 134.39 0.48952 134.39 134.11 134.6 0 18 13 2 0 0 0 0.10573 1 26591 26591 53.833 2.203 1 2357500 + 25911 14406 17093 17099 25614 25614 0.06869397160471635 LERCYSIP 8 Unmodified _LERCYSIP_ 0 0 0 REV__ENSG00000143653|ENST00000366510|SCCPDH REV__ENSG00000143653|ENST00000366510|SCCPDH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25836181640625 2 490.747127 979.479702 0.068006 3.3374E-05 -0.30996 -0.00015211 -0.24196 -0.00011874 490.74693105534425 85.045 0.93991 81.381 80.987 81.927 -3.6641 47 26 2 0 0 0 0.9455 1 16567 16567 16.942 0 1 3994800 + 25912 16744 17094 17100 25615 25615 -0.010858613542723106 LEREFSWL 8 Unmodified _LEREFSWL_ 0 0 0 ENST00000216117.8_1_22:35789599-35789908:+|nuORF ENST00000216117.8_1_22:35789599-35789908:+|nuORF ENST00000216117.8_1_22:35789599-35789908:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2083435058594 3 360.522192 1078.54475 -0.20789 -7.4947E-05 -2.5718 -0.0009272 -2.7797 -0.0010021 360.52151961983327 30.13 0.66438 30.13 29.716 30.381 0 26 18 2 0 0 0 1.004 1 5380 5380 8.7454 3.8484 1 1000700 25913 8108 17095 17101 25616 25616 0.00861456443226416 LERERYKEYQR 11 Unmodified _LERERYKEYQR_ 0 0 0 REV__ENST00000460723.5_1_22:32017538-32058194:-|nuORF REV__ENST00000460723.5_1_22:32017538-32058194:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4082641601562 2 785.410246 1568.80594 NaN NaN NaN NaN NaN NaN NaN 165.3 1 165.3 164.8 165.8 0 0 0 0 0.23698 1 33531 33531 2.4985 1.0166 1 + 25914 19788 17096 17102 25617 25617 0.04428791352324879 LERERYKEYQR 11 Unmodified _LERERYKEYQR_ 0 0 0 REV__ENST00000460723.5_1_22:32017538-32058194:-|nuORF REV__ENST00000460723.5_1_22:32017538-32058194:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4100341796875 2 785.410246 1568.80594 NaN NaN NaN NaN NaN NaN NaN 163.03 1 158.24 157.74 158.74 -4.7898 0 0 0 0.23698 1 32469 32469 2.086 0.89267 1 + 25915 19788 17096 17102 25618 25618 0.04428791352324879 LERERYKEYQR 11 Unmodified _LERERYKEYQR_ 0 0 0 REV__ENST00000460723.5_1_22:32017538-32058194:-|nuORF REV__ENST00000460723.5_1_22:32017538-32058194:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4071044921875 2 785.410246 1568.80594 NaN NaN NaN NaN NaN NaN NaN 107.24 1 102.83 102.33 103.33 -4.4121 0 0 0 0.23698 1 20572 20572 0.96228 0.61164 1 + 25916 19788 17096 17102 25619 25619 0.04428791352324879 LERFFRKR 8 Unmodified _LERFFRKR_ 0 0 0 REV__nc|ENSG00000004139|Q6SZW1-2|SARM1 REV__nc|ENSG00000004139|Q6SZW1-2|SARM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3231201171875 2 576.343449 1150.67235 NaN NaN NaN NaN NaN NaN NaN 86.345 1 82.616 82.116 83.116 -3.7289 0 0 0 0.2396 1 16510 16510 0.0082765 0.004896 1 + 25917 13832 17097 17103 25620 25620 0.1030364182795438 LERFIDSY 8 Unmodified _LERFIDSY_ 0 0 0 CTIF|p.P82Hfs*77|2|0.36|ENSG00000134030|chr18:48636672-48636672|C/-|frameshift_variant;ENSG00000134030|ENST00000256413|CTIF;nc|ENSG00000134030|O43310-2|CTIF CTIF|p.P82Hfs*77|2|0.36|ENSG00000134030|chr18:48636672-48636672|C/-|frameshift_variant CTIF|p.P82Hfs*77|2|0.36|ENSG00000134030|chr18:48636672-48636672|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2726440429688 2 521.763832 1041.51311 -0.2644 -0.00013795 -2.3638 -0.0012333 -2.6282 -0.0013713 521.762656663633 84.61 0.27706 80.946 80.815 81.092 -3.6641 11 7 2 0 0 0 0.73426 1 16514 16514 9.3474 0 1 1314900 25918 741 17098 17104 25621 25621 -0.0059853631069017865 LERFSEDGEY 10 Unmodified _LERFSEDGEY_ 0 0 0 REV__RWDD4|p.N69*|1|0.31|ENSG00000182552|chr4:183651228-183651229|-/A|frameshift_variant REV__RWDD4|p.N69*|1|0.31|ENSG00000182552|chr4:183651228-183651229|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7754516601562 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 107.52 1 107.52 107.02 108.02 0 0 0 0 0.22588 1 21142 21142 6.2058 1.4498 1 + 25919 18786 17099 17105 25622 25622 -0.07632981703750374 LERGTGGAPP 10 Unmodified _LERGTGGAPP_ 0 0 0 REV__ENST00000481110.6_2_4:1795065-1795164:+|nuORF REV__ENST00000481110.6_2_4:1795065-1795164:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7219543457031 2 477.753798 953.493044 -0.26885 -0.00012845 0.23205 0.00011086 -0.036808 -1.7585E-05 477.75378426109046 20.339 0.59659 18.955 18.535 19.132 -1.3847 20 16 3 0 0 0 0.73842 1 3136 3136 7.2892 0 1 881930 + 25920 22173 17100 17106 25623 25623 0.014437127493351909 LERGTGGAPP 10 Unmodified _LERGTGGAPP_ 0 0 0 REV__ENST00000481110.6_2_4:1795065-1795164:+|nuORF REV__ENST00000481110.6_2_4:1795065-1795164:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.753798 953.493044 -0.13746 -6.5673E-05 0.089679 4.2844E-05 -0.047782 -2.2828E-05 477.7537522052162 18.933 0.34318 18.933 18.652 18.996 0 -0.027128 6.7573E-05 NaN 7.2892 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 798620 + 25921 22173 17100 17106 0.014437127493351909 LERGTGGAPP 10 Unmodified _LERGTGGAPP_ 0 0 0 REV__ENST00000481110.6_2_4:1795065-1795164:+|nuORF REV__ENST00000481110.6_2_4:1795065-1795164:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.753798 953.493044 0.28839 0.00013778 -0.47902 -0.00022885 -0.19063 -9.1075E-05 477.7536143249198 20.45 0.45817 19.053 18.688 19.146 -1.3966 0.092644 -0.00047582 NaN 7.2892 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 660970 + 25922 22173 17100 17106 0.014437127493351909 LERGTGGAPP 10 Unmodified _LERGTGGAPP_ 0 0 0 REV__ENST00000481110.6_2_4:1795065-1795164:+|nuORF REV__ENST00000481110.6_2_4:1795065-1795164:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.753798 953.493044 -0.26885 -0.00012845 0.23205 0.00011086 -0.036808 -1.7585E-05 477.75378426109046 20.339 0.59659 18.955 18.535 19.132 -1.3847 -0.0058215 0.00020361 NaN 7.2892 20 16 3 NaN NaN NaN NaN 0 NaN NaN 0 881930 + 25923 22173 17100 17106 0.014437127493351909 LERGTGGAPP 10 Unmodified _LERGTGGAPP_ 0 0 0 REV__ENST00000481110.6_2_4:1795065-1795164:+|nuORF REV__ENST00000481110.6_2_4:1795065-1795164:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.753798 953.493044 -0.82657 -0.0003949 0.36055 0.00017225 -0.46602 -0.00022264 477.75397098237687 20.622 0.31502 18.901 18.73 19.045 -1.7211 -0.059694 0.00032639 NaN 7.2892 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 418600 + 25924 22173 17100 17106 0.014437127493351909 LERHHKPY 8 Unmodified _LERHHKPY_ 0 0 0 ENSG00000130035|ENST00000252318|GALNT8 ENSG00000130035|ENST00000252318|GALNT8 ENSG00000130035|ENST00000252318|GALNT8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21319580078125 3 360.52968 1078.56721 -0.4814 -0.00017356 0.27853 0.00010042 -0.20287 -7.3141E-05 360.52974399883504 53.481 0.55526 50.597 50.317 50.872 -2.8837 26 15 2 0 0 0 1.0197 1 10148 10148 5.7319 5.7319 1 2742500 25925 3580 17101 17107 25624 25624 0.031071006315187333 LERHHKPY 8 Unmodified _LERHHKPY_ 0 0 0 ENSG00000130035|ENST00000252318|GALNT8 ENSG00000130035|ENST00000252318|GALNT8 ENSG00000130035|ENST00000252318|GALNT8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 360.52968 1078.56721 -0.72956 -0.00026303 0.51325 0.00018504 -0.21631 -7.7984E-05 360.5298207472402 53.678 0.51903 50.583 50.306 50.825 -3.0954 -0.022017 0.00027136 NaN 5.7319 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2329300 25926 3580 17101 17107 0.031071006315187333 LERHKKRK 8 Unmodified _LERHKKRK_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L REV__ENSG00000122728|ENST00000242310|TAF1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7923583984375 2 547.848899 1093.68324 NaN NaN NaN NaN NaN NaN NaN 118.44 1 118.44 117.94 118.94 0 0 0 0 0.21486 1 23328 23328 5.7604 0 1 + 25927 15703 17102 17108 25625 25625 0.14015044202210447 LERHKKRKRR 10 Unmodified _LERHKKRKRR_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L REV__ENSG00000122728|ENST00000242310|TAF1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 704.0984497070312 2 703.95001 1405.88547 NaN NaN NaN NaN NaN NaN NaN 166.21 1 166.21 165.71 166.71 0 0 0 0 0.22588 1 33826 33826 1.4819 0.15237 1 + 25928 15703 17103 17109 25626 25626 0.19875947607624767 LERHLERKA 9 Unmodified _LERHLERKA_ 0 0 0 ENST00000546722.1_1_12:107393683-107395617:-|nuORF;ENSG00000008405|ENST00000008527|CRY1 ENST00000546722.1_1_12:107393683-107395617:-|nuORF ENST00000546722.1_1_12:107393683-107395617:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3365478515625 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 71.819 1 71.819 71.319 72.319 0 0 0 0 0.23508 1 13917 13917 6.2058 0 1 25929 1045 17104 17110 25627 25627 0.08778730240078403 LERIEQDY 8 Unmodified _LERIEQDY_ 0 0 0 REV__NEFM|p.A159T|1|0.37|ENSG00000104722|chr8:24914268-24914268|G/A|missense_variant REV__NEFM|p.A159T|1|0.37|ENSG00000104722|chr8:24914268-24914268|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.28515625 2 533.264196 1064.51384 0.09851 5.2532E-05 -0.19432 -0.00010363 -0.095814 -5.1094E-05 533.2640766688288 125.34 0.88861 125.34 124.86 125.75 0 41 24 2 0 0 0 0.71876 1 24806 24806 11.64 0 1 4802500 + 25930 14936 17105 17111 25628 25628 -0.015837416616705013 LERIHFDSY 9 Unmodified _LERIHFDSY_ 0 0 0 ENSG00000165355|ENST00000298097|FBXO33 ENSG00000165355|ENST00000298097|FBXO33 ENSG00000165355|ENST00000298097|FBXO33 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.25634765625 2 590.293288 1178.57202 NaN NaN NaN NaN NaN NaN NaN 158.5 1 153.23 152.73 153.73 -5.2748 0 0 0 0.23508 1 30761 30761 7.2892 2.96 1 25931 5622 17106 17112 25629 25629 -0.01012060016387295 LERKHLLV 8 Unmodified _LERKHLLV_ 0 0 0 REV__IL1RAPL1|p.M355I|1|0.68|ENSG00000169306|chrX:29941658-29941658|G/A|missense_variant REV__IL1RAPL1|p.M355I|1|0.68|ENSG00000169306|chrX:29941658-29941658|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 504.2937316894531 2 504.321651 1006.62875 NaN NaN NaN NaN NaN NaN NaN 141.92 1 136.94 136.44 137.44 -4.9877 0 0 0 0.23749 1 27339 27339 0.0082765 0 1 + 25932 18095 17107 17113 25630 25630 0.12570032330813774 LERKKRGS 8 Unmodified _LERKKRGS_ 0 0 0 ENST00000449470.6_3_4:39459222-39459833:-|nuORF ENST00000449470.6_3_4:39459222-39459833:-|nuORF ENST00000449470.6_3_4:39459222-39459833:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.4236755371094 3 325.201564 972.582862 NaN NaN NaN NaN NaN NaN NaN 88.94 1 88.94 88.44 89.44 0 0 0 0 0.23312 1 17364 17364 0.063987 0 1 25933 9964 17108 17114 25631 25631 0.09547387148575126 LERKRRYHFDT 11 Unmodified _LERKRRYHFDT_ 0 0 0 nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3;ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-3|PEG3;PEG3|p.T824Nfs*10|1|0.16|ENSG00000198300|chr19:56815956-56815971|TCCCTTCCTTCAGAGG/-|frameshift_variant nc|ENSG00000198300|Q9GZU2-2|PEG3 nc|ENSG00000198300|Q9GZU2-2|PEG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2083435058594 4 380.957475 1519.80079 -0.5914 -0.0002253 -0.80547 -0.00030685 -1.3969 -0.00053215 380.9572000213636 77.543 0.45135 73.884 73.573 74.024 -3.6588 18 12 2 0 0 0 0.80759 1 14722 14722 2.6312 1.7057 1 1295300 25934 7442 17109 17115 25632 25632 0.06168532280344152 LERKWLLH 8 Unmodified _LERKWLLH_ 0 0 0 ENST00000299381.4_1_10:73975879-73983808:+|nuORF;ENST00000470481.2_1_10:73983622-73983808:+|nuORF ENST00000299381.4_1_10:73975879-73983808:+|nuORF ENST00000299381.4_1_10:73975879-73983808:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7858276367188 2 547.827101 1093.63965 NaN NaN NaN NaN NaN NaN NaN 133.96 1 133.96 133.46 134.46 0 0 0 0 0.23782 1 26511 26511 0.0082765 0 1 25935 8535 17110 17116 25633 25633 0.09657434705104606 LERKYWKNRIY 11 Unmodified _LERKYWKNRIY_ 0 0 0 ENSG00000186280|ENST00000335080|KDM4D ENSG00000186280|ENST00000335080|KDM4D ENSG00000186280|ENST00000335080|KDM4D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.694580078125 3 523.628054 1567.86233 NaN NaN NaN NaN NaN NaN NaN 114.14 1 114.14 113.64 114.64 0 0 0 0 0.22632 1 22449 22449 0.026206 0 1 25936 7049 17111 17117 25634 25634 0.10111463979660584 LERKYWKNRIY 11 Unmodified _LERKYWKNRIY_ 0 0 0 ENSG00000186280|ENST00000335080|KDM4D ENSG00000186280|ENST00000335080|KDM4D ENSG00000186280|ENST00000335080|KDM4D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.694580078125 3 523.628054 1567.86233 NaN NaN NaN NaN NaN NaN NaN 114.15 1 114.15 113.65 114.65 0 0 0 0 0.23698 1 22450 22450 0.45452 0.35968 1 25937 7049 17111 17117 25635 25635 0.10111463979660584 LERKYWKNRIY 11 Unmodified _LERKYWKNRIY_ 0 0 0 ENSG00000186280|ENST00000335080|KDM4D ENSG00000186280|ENST00000335080|KDM4D ENSG00000186280|ENST00000335080|KDM4D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.683349609375 3 523.628054 1567.86233 NaN NaN NaN NaN NaN NaN NaN 120.18 1 115.66 115.16 116.16 -4.5221 0 0 0 0.23698 1 23696 23696 1.1098 0.6038 1 25938 7049 17111 17117 25636 25636 0.10111463979660584 LERKYWKNRIY 11 Unmodified _LERKYWKNRIY_ 0 0 0 ENSG00000186280|ENST00000335080|KDM4D ENSG00000186280|ENST00000335080|KDM4D ENSG00000186280|ENST00000335080|KDM4D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6876220703125 3 523.628054 1567.86233 NaN NaN NaN NaN NaN NaN NaN 160.48 1 155.68 155.18 156.18 -4.7952 0 0 0 0.23698 1 31915 31915 1.3296 0.82369 1 25939 7049 17111 17117 25637 25637 0.10111463979660584 LERLAELGW 9 Unmodified _LERLAELGW_ 0 0 0 REV__TRIL|p.G796Afs*4|1|0.12|ENSG00000255690|chr7:28955660-28955660|C/-|frameshift_variant REV__TRIL|p.G796Afs*4|1|0.12|ENSG00000255690|chr7:28955660-28955660|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7896118164062 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 159.07 1 159.07 158.57 159.57 0 0 0 0 0.21844 1 31941 31941 18.146 3.3081 1 + 25940 19858 17112 17118 25638 25638 0.04757431851612637 LERLKQSLKRR 11 Unmodified _LERLKQSLKRR_ 0 0 0 REV__ENST00000479768.6_1_7:142643674-142659293:-|nuORF REV__ENST00000479768.6_1_7:142643674-142659293:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 713.9514770507812 2 713.951884 1425.88921 NaN NaN NaN NaN NaN NaN NaN 166.15 1 166.15 165.65 166.65 0 0 0 0 0.23429 1 33805 33805 4.897 1.6157 1 + 25941 19381 17113 17119 25639 25639 0.193305725907976 LERQTEHM 8 Unmodified _LERQTEHM_ 0 0 0 REV__TRUB2|p.K233R|1|0.44|ENSG00000167112|chr9:128309848-128309848|T/C|missense_variant REV__TRUB2|p.K233R|1|0.44|ENSG00000167112|chr9:128309848-128309848|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2584838867188 2 522.250566 1042.48658 -0.44951 -0.00023476 -1.8281 -0.00095475 -2.2777 -0.0011895 522.2492259461876 32.697 0.41517 30.55 30.38 30.795 -2.1468 25 11 3 0 0 0 0.62642 1 5729 5729 20.454 0 1 1481200 + 25942 25490 17114 17120 25640 25640 -0.03296548473690564 LERRITKHV 9 Unmodified _LERRITKHV_ 0 0 0 REV__ENSG00000165943|ENST00000298894|MOAP1 REV__ENSG00000165943|ENST00000298894|MOAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.315673828125 2 576.354014 1150.69348 NaN NaN NaN NaN NaN NaN NaN 89.802 1 89.802 89.302 90.302 0 0 0 0 0.23508 1 17541 17541 3.9444 0.3479 1 + 25943 17811 17115 17121 25641 25641 0.12415607136813378 LERTASKPP 9 Unmodified _LERTASKPP_ 0 0 0 ENSG00000177354|ENST00000374144|C10orf71 ENSG00000177354|ENST00000374144|C10orf71 ENSG00000177354|ENST00000374144|C10orf71 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.9989929199219 3 333.525825 997.555644 -0.35106 -0.00011709 1.3251 0.00044195 0.97401 0.00032486 333.5262900454403 37.2 0.44543 37.2 36.993 37.438 0 20 12 2 0 0 0 0.88413 1 6838 6838 0.23584 0 1 444750 25944 6507 17116 17122 25642 25642 0.05676858817525954 LERTPALIIAY 11 Unmodified _LERTPALIIAY_ 0 0 0 REV__ENSG00000174243|ENST00000308025|DDX23 REV__ENSG00000174243|ENST00000308025|DDX23 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7655639648438 2 630.371538 1258.72852 NaN NaN NaN NaN NaN NaN NaN 71.384 1 68.135 67.635 68.635 -3.2492 0 0 0 0.23264 1 13897 13897 6.2058 1.3088 1 + 25945 18404 17117 17123 25643 25643 0.10950805154107002 LERVKSELL 9 Unmodified _LERVKSELL_ 0 0 0 REV__RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant REV__RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7830810546875 2 543.829506 1085.64446 0.38186 0.00020766 -0.42765 -0.00023257 -0.04579 -2.4902E-05 543.8293050776572 117.24 0.58687 112.66 112.3 112.88 -4.5815 31 16 3 0 0 0 0.31714 1 22471 22471 30.637 0 1 1973100 + 25946 14146 17118 17124 25644 25644 0.1050627405720661 LERVKSELL 9 Unmodified _LERVKSELL_ 0 0 0 REV__RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant REV__RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7877807617188 2 543.829506 1085.64446 0.5535 0.00030101 -0.28616 -0.00015562 0.26733 0.00014538 543.8292807352573 117.05 0.60268 112.69 112.3 112.91 -4.3585 26 16 2 0 0 0 0.47479 1 22511 22511 30.637 0 1 1401800 + 25947 14146 17118 17124 25645 25645 0.1050627405720661 LERVKSELL 9 Unmodified _LERVKSELL_ 0 0 0 REV__RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant REV__RIMBP2|p.G774Efs*16|1|0.62|ENSG00000060709|chr12:130428219-130428219|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.829506 1085.64446 0.35586 0.00019353 -0.34706 -0.00018874 0.0088018 4.7867E-06 543.8293865540004 116.99 0.52118 112.5 112.29 112.81 -4.486 -0.11452 -1.3134E-05 NaN 30.637 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1299600 + 25948 14146 17118 17124 0.1050627405720661 LESADMLKH 9 Unmodified _LESADMLKH_ 0 0 0 REV__PCDH18|p.E1114K|1|0.27|ENSG00000189184|chr4:137521097-137521097|C/T|missense_variant REV__PCDH18|p.E1114K|1|0.27|ENSG00000189184|chr4:137521097-137521097|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2618408203125 2 522.263142 1042.51173 NaN NaN NaN NaN NaN NaN NaN 131.06 1 126.42 125.92 126.92 -4.6359 0 0 0 0.05839 1 25828 25828 48.346 19.859 1 + 25949 24438 17119 17125 25646 25646 -0.007824936711358532 LESAQVVQ 8 Unmodified _LESAQVVQ_ 0 0 0 REV__ENST00000598397.1_1_19:49850519-49858643:-|nuORF REV__ENST00000598397.1_1_19:49850519-49858643:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2356872558594 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 70.695 1 70.695 70.195 71.195 0 0 0 0 0.21486 1 13693 13693 9.3474 0 1 + 25950 23394 17120 17126 25647 25647 0.01901505626483413 LESAREYI 8 Unmodified _LESAREYI_ 0 0 0 REV__ENST00000506836.5_1_5:55763613-55777587:-|nuORF REV__ENST00000506836.5_1_5:55763613-55777587:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.276611328125 2 490.756007 979.497461 0.2939 0.00014423 0.11706 5.7449E-05 0.41096 0.00020168 490.7561214118364 98.034 0.48419 98.034 97.742 98.226 0 21 13 2 0 0 0 0.50387 1 19196 19196 26.884 0 1 1445300 + 25951 22493 17121 17127 25648 25648 0.006891771722393969 LESAREYI 8 Unmodified _LESAREYI_ 0 0 0 REV__ENST00000506836.5_1_5:55763613-55777587:-|nuORF REV__ENST00000506836.5_1_5:55763613-55777587:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27667236328125 2 490.756007 979.497461 0.12128 5.952E-05 0.51933 0.00025486 0.64061 0.00031438 490.7562824070177 101.96 0.44568 97.778 97.479 97.924 -4.1861 16 12 2 0 0 0 0.50387 1 20029 20029 42.095 11.87 1 835650 + 25952 22493 17121 17127 25649 25649 0.006891771722393969 LESAREYI 8 Unmodified _LESAREYI_ 0 0 0 REV__ENST00000506836.5_1_5:55763613-55777587:-|nuORF REV__ENST00000506836.5_1_5:55763613-55777587:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25775146484375 2 490.756007 979.497461 0.40813 0.00020029 -0.033758 -1.6567E-05 0.37437 0.00018373 490.7561447932597 102.02 0.36728 97.7 97.507 97.874 -4.3208 14 10 2 0 0 0 0.50387 1 19559 19559 42.095 18.946 1 786380 + 25953 22493 17121 17127 25650 25650 0.006891771722393969 LESAREYI 8 Unmodified _LESAREYI_ 0 0 0 REV__ENST00000506836.5_1_5:55763613-55777587:-|nuORF REV__ENST00000506836.5_1_5:55763613-55777587:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2766418457031 2 490.756007 979.497461 0.22623 0.00011102 0.17813 8.7417E-05 0.40435 0.00019844 490.75625539590555 101.88 0.48105 97.861 97.598 98.079 -4.0212 14 13 2 0 0 0 0.50387 1 19552 19552 42.095 11.87 1 1103000 + 25954 22493 17121 17127 25651 25651 0.006891771722393969 LESAVVAAL 9 Unmodified _LESAVVAAL_ 0 0 0 ENST00000591665.1_1_19:55671250-55674120:+|nuORF ENST00000591665.1_1_19:55671250-55674120:+|nuORF ENST00000591665.1_1_19:55671250-55674120:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2171630859375 2 436.758018 871.501483 -0.14723 -6.4306E-05 0.1813 7.9184E-05 0.034064 1.4878E-05 436.7580072600686 61.256 0.61767 61.256 60.979 61.597 0 45 17 3 0 0 0 0.049627 1 11799 11799 71.134 6.8973 1 5180900 25955 11628 17122 17128 25652 25652 0.060592666659431416 LESCGYADT 9 Unmodified _LESCGYADT_ 0 0 0 REV__ENST00000548281.5_1_12:54718997-54741610:+|nuORF REV__ENST00000548281.5_1_12:54718997-54741610:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.1277160644531 3 320.132264 957.374962 -0.19805 -6.3403E-05 0.85405 0.00027341 0.656 0.00021001 320.13250599288466 109.99 0.95013 105.54 104.95 105.9 -4.4518 44 26 2 0 0 0 0.74257 1 21140 21140 2.4985 0 1 1761600 + 25956 22909 17123 17129 25653 25653 -0.10543027621497458 LESDSFLKF 9 Unmodified _LESDSFLKF_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7714233398438 2 543.279315 1084.54408 0.3641 0.00019781 -1.3399 -0.00072797 -0.97585 -0.00053016 543.2784633928663 154.63 0.8049 149.85 149.49 150.3 -4.7791 34 22 2 0 0 0 0.21532 1 30749 30749 36.506 0.37917 1 1760400 25957 5189 17124 17130 25654 25654 0.005186170035358373 LESDYYLGGY 10 Unmodified _LESDYYLGGY_ 0 0 0 nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3 nc|ENSG00000165323|Q8TDW7|FAT3 nc|ENSG00000165323|Q8TDW7|FAT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2645874023438 2 590.263862 1178.51317 0.35731 0.0002109 -0.61526 -0.00036317 -0.25796 -0.00015226 590.2639406619761 96.992 0.97495 96.992 96.598 97.573 0 79 27 4 0 0 0 0.57735 1 19095 19095 20.454 5.6154 1 10698000 25958 5619 17125 17131 25655 25655 -0.06894581101346375 LESEKPNL 8 Unmodified _LESEKPNL_ 0 0 0 ENSG00000084710|ENST00000403714|EFR3B;nc|ENSG00000084710|Q9Y2G0-3|EFR3B ENSG00000084710|ENST00000403714|EFR3B ENSG00000084710|ENST00000403714|EFR3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25213623046875 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 135.26 1 130.62 130.12 131.12 -4.6399 0 0 0 0.21323 1 26679 26679 14.582 0 1 25959 1669 17126 17132 25656 25656 0.01945774797957256 LESFGAVVSA 10 Unmodified _LESFGAVVSA_ 0 0 0 REV__ENSG00000003509|ENST00000002125|NDUFAF7 REV__ENSG00000003509|ENST00000002125|NDUFAF7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25811767578125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 81.313 1 77.625 77.125 78.125 -3.6879 0 0 0 2.8426 1 15495 15495 6.6304 1.7334 1 + 25960 13830 17127 17133 25657 25657 0.012100613150096251 LESGDSSGISI 11 Unmodified _LESGDSSGISI_ 0 0 0 REV__ENSG00000116191|ENST00000367635|RALGPS2 REV__ENSG00000116191|ENST00000367635|RALGPS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2784423828125 2 532.758943 1063.50333 -0.025576 -1.3626E-05 -1.2261 -0.00065323 -1.2517 -0.00066685 533.2596693121567 69.825 0.35211 66.645 66.368 66.72 -3.1796 12 9 2 0 0 0 0.61937 1 13590 13590 17.113 3.2068 1 1240500 + 25961 15475 17128 17134 25658 25658 -0.02587769106730775 LESGGKEEI 9 Unmodified _LESGGKEEI_ 0 0 0 ENST00000534264.1_2_11:82569531-82569660:-|nuORF ENST00000534264.1_2_11:82569531-82569660:-|nuORF ENST00000534264.1_2_11:82569531-82569660:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2455749511719 2 481.245472 960.476391 0.19881 9.5676E-05 -0.36213 -0.00017427 -0.16332 -7.8598E-05 481.2452666262255 99.809 1.515 95.819 95.377 96.892 -3.9895 145 43 5 0 0 0 0.31714 1 19287 19287 30.637 0 1 182930000 25962 11004 17129 17135 25659 25659 -0.005428329272717747 LESGHFDAS 9 Unmodified _LESGHFDAS_ 0 0 0 nc|ENSG00000158816|Q5TIE3-4|VWA5B1;nc|ENSG00000158816|Q5TIE3-5|VWA5B1;ENSG00000158816|ENST00000289815|VWA5B1;nc|ENSG00000158816|Q5TIE3|VWA5B1;VWA5B1|p.V91A|1|0.38|ENSG00000158816|chr1:20312968-20312968|T/C|missense_variant nc|ENSG00000158816|Q5TIE3-4|VWA5B1 nc|ENSG00000158816|Q5TIE3-4|VWA5B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.237548828125 2 481.714339 961.414125 0.023713 1.1423E-05 -0.013489 -6.4977E-06 0.010224 4.9253E-06 481.7143361837041 31.736 0.38224 31.736 31.53 31.913 0 20 10 2 0 0 0 0.80521 1 5716 5716 10.824 3.5347 1 1215700 25963 12400 17130 17136 25660 25660 -0.06812559275613239 LESHHDTW 8 Unmodified _LESHHDTW_ 0 0 0 ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1;QSOX1|p.S469Vfs*117|1|0.35|ENSG00000116260|chr1:180194325-180194325|G/-|frameshift_variant ENSG00000116260|ENST00000367602|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.1699523925781 3 342.154279 1023.44101 NaN NaN NaN NaN NaN NaN NaN 73.906 1 70.542 70.042 71.042 -3.3643 0 0 0 0.21486 1 14411 14411 3.9444 0 1 25964 2920 17131 17137 25661 25661 -0.06977450664430762 LESISFYDNR 10 Unmodified _LESISFYDNR_ 0 0 0 LRRN3|p.I314*|1|0.18|ENSG00000173114|chr7:111123708-111123708|A/-|frameshift_variant;LRRN3|p.S441Pfs*17|1|0.3|ENSG00000173114|chr7:111124091-111124091|T/-|frameshift_variant;LRRN3|p.K605Nfs*3|1|0.17|ENSG00000173114|chr7:111124581-111124581|A/-|frameshift_variant;LRRN3|p.C606Mfs*12|1|0.27|ENSG00000173114|chr7:111124580-111124581|-/A|frameshift_variant;ENSG00000173114|ENST00000308478|LRRN3 LRRN3|p.I314*|1|0.18|ENSG00000173114|chr7:111123708-111123708|A/-|frameshift_variant LRRN3|p.I314*|1|0.18|ENSG00000173114|chr7:111123708-111123708|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7642822265625 2 622.30131 1242.58807 0.67358 0.00041917 -0.40147 -0.00024983 0.27211 0.00016934 622.3010376819029 102.03 0.72192 98.005 97.598 98.32 -4.0212 34 20 2 0 0 0 0.85223 1 19628 19628 18.146 4.2403 1 3822000 25965 6267 17132 17138 25662 25662 -0.02352398570155856 LESITPYITG 10 Unmodified _LESITPYITG_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.G2188Efs*28|1|0.79|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.782958984375 2 547.292422 1092.57029 0.3232 0.00017688 -0.25794 -0.00014117 0.065262 3.5718E-05 547.2921257014316 120.7 0.53427 120.7 120.35 120.89 0 40 14 4 0 0 0 0.23319 1 23811 23811 3.104 0 1 5223600 25966 7627 17133 17139 25663 25663 0.027708861749943026 LESITPYITG 10 Unmodified _LESITPYITG_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.G2188Efs*28|1|0.79|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7935180664062 2 547.292422 1092.57029 0.33269 0.00018208 -0.13518 -7.3982E-05 0.19751 0.0001081 547.2921325432287 125.13 0.56673 120.53 120.19 120.76 -4.5984 40 15 3 0 0 0 0.47533 1 24710 24710 37.974 16.437 1 5599100 25967 7627 17133 17139 25664 25664 0.027708861749943026 LESKLAQAE 9 Unmodified _LESKLAQAE_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 330.1693420410156 3 330.181835 987.523675 NaN NaN NaN NaN NaN NaN NaN 81.765 1 78.077 77.577 78.577 -3.6879 0 0 0 0.23508 1 15582 15582 4.897 0 1 25968 2300 17134 17140 25665 25665 0.02941446343709231 LESLDLMSPF 10 Unmodified _LESLDLMSPF_ 0 0 0 CON__ENSEMBL:ENSBTAP00000025008 CON__ENSEMBL:ENSBTAP00000025008 CON__ENSEMBL:ENSBTAP00000025008 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3350219726562 2 576.286282 1150.55801 0.63733 0.00036729 0.88605 0.00051062 1.5234 0.00087791 576.2871475716695 46.454 1.3943 46.454 45.968 47.362 0 74 39 3 0 0 0 0.59928 3 8714 8714;8776;8855 19.257 0 1 3823100 + 25969 645 17135 17141 25666;25667;25668 25666 -0.011244735596619648 LESLICKVG 9 Unmodified _LESLICKVG_ 0 0 0 NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant;ENSG00000136937|ENST00000375147|NCBP1 NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25274658203125 2 481.272978 960.531403 0.30726 0.00014787 -0.58738 -0.00028269 -0.28012 -0.00013482 481.2726659326567 102.78 0.38246 98.462 98.254 98.637 -4.3208 15 10 2 0 0 0 0.46541 1 19696 19696 21.747 1.293 1 853920 25970 4055 17136 17142 25669 25669 0.049558823396409935 LESLTAES 8 Unmodified _LESLTAES_ 0 0 0 ENST00000520987.1_1_8:101149771-101157363:-|nuORF;ENSG00000156509|ENST00000428847|FBXO43;FBXO43|p.K687Ffs*26|1|0.06|ENSG00000156509|chr8:100133870-100133871|-/AAAATTATGAATATTTTGAA|frameshift_variant ENST00000520987.1_1_8:101149771-101157363:-|nuORF ENST00000520987.1_1_8:101149771-101157363:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.23809814453125 2 425.21364 848.412728 NaN NaN NaN NaN NaN NaN NaN 71.59 1 67.963 67.463 68.463 -3.6275 0 0 0 0.20294 1 13504 13504 23.148 5.0134 1 25971 5091 17137 17143 25670 25670 -0.017541933643656193 LESPAPETSI 10 Unmodified _LESPAPETSI_ 0 0 0 REV__nc|ENSG00000183621|Q7Z4V0-2|ZNF438 REV__nc|ENSG00000183621|Q7Z4V0-2|ZNF438 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2676391601562 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 22.179 1 20.705 20.205 21.205 -1.4742 0 0 0 0.22588 1 3778 3778 6.2058 1.4498 1 + 25972 18845 17138 17144 25671 25671 -0.001302772387589357 LESPHYAVK 9 Unmodified _LESPHYAVK_ 0 0 0 MPP5-GPHN|5|fusion;MPP5-GPHN|6|fusion;MPP5-GPHN|3|fusion;MPP5-GPHN|4|fusion;nc|ENSG00000072415|Q8N3R9-2|PALS1;MPP5-GPHN|7|fusion;ENSG00000072415|ENST00000261681|PALS1;MPP5-GPHN|8|fusion;MPP5-GPHN|1|fusion;MPP5-GPHN|2|fusion MPP5-GPHN|5|fusion MPP5-GPHN|5|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2803955078125 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 110.67 1 106.18 105.68 106.68 -4.4915 0 0 0 0.22251 1 21245 21245 16.942 0 1 25973 1466 17139 17145 25672 25672 0.025174564432290936 LESPLLPRVR 10 Unmodified _LESPLLPRVR_ 0 0 0 REV__ENST00000503417.1_1_5:137515369-137517456:+|nuORF REV__ENST00000503417.1_1_5:137515369-137517456:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2606811523438 2 590.364047 1178.71354 NaN NaN NaN NaN NaN NaN NaN 166.34 1 161.39 160.89 161.89 -4.9484 0 0 0 0.22588 1 32582 32582 9.3831 1.7742 1 + 25974 15323 17140 17146 25673 25673 0.13133358076765944 LESQTLQLY 9 Unmodified _LESQTLQLY_ 0 0 0 REV__ENSG00000162222|ENST00000316461|TTC9C REV__ENSG00000162222|ENST00000316461|TTC9C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7799072265625 2 547.790047 1093.56554 0.64473 0.00035318 0.11158 6.1124E-05 0.75632 0.0004143 547.7900934995405 104.36 0.58131 104.36 104.07 104.65 0 25 16 2 0 0 0 0.56623 1 20512 20512 27.629 7.2143 1 1240700 + 25975 17484 17141 17147 25674 25674 0.02250002032269549 LESSRHLS 8 Unmodified _LESSRHLS_ 0 0 0 nc|ENSG00000090975|Q9BZ72-3|PITPNM2;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2;PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant nc|ENSG00000090975|Q9BZ72-3|PITPNM2;PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647033691406 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 123.32 1 118.73 118.23 119.23 -4.5926 0 0 0 0.23584 1 23739 23739 0.12286 0 1 25976 12794;1797 17142 17148 25675 25675 0.010754262322848263 LESSRHLS 8 Unmodified _LESSRHLS_ 0 0 0 nc|ENSG00000090975|Q9BZ72-3|PITPNM2;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2;PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant nc|ENSG00000090975|Q9BZ72-3|PITPNM2;PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647644042969 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 123.98 1 119.39 118.89 119.89 -4.5926 0 0 0 0.23584 1 23861 23861 0.12286 0 1 25977 12794;1797 17142 17148 25676 25676 0.010754262322848263 LESTKSPAE 9 Unmodified _LESTKSPAE_ 0 0 0 HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3 HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24554443359375 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 98.796 1 98.796 98.296 99.296 0 0 0 0 0.21065 1 19368 19368 20.454 3.5113 1 25978 3463 17143 17149 25677 25677 -0.005428329272831434 LESTKSPAE 9 Unmodified _LESTKSPAE_ 0 0 0 HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3 HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2375793457031 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 98.857 1 98.857 98.357 99.357 0 0 0 0 0.19721 1 19380 19380 24.021 2.2739 1 25979 3463 17143 17149 25678 25678 -0.005428329272831434 LESTPPFF 8 Unmodified _LESTPPFF_ 0 0 0 REV__nc|ENSG00000262085|Q8NH06|OR1P1 REV__nc|ENSG00000262085|Q8NH06|OR1P1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.1737060546875 3 313.160371 936.459284 -0.46887 -0.00014683 -0.12683 -3.9717E-05 -0.5957 -0.00018655 313.1604575458538 104.41 0.75422 100.19 99.857 100.61 -4.2183 60 21 4 0 0 0 0.85653 1 20602 20602 1.8442 0.19162 1 5494700 + 25980 24300 17144 17150 25679 25679 -0.01148708742425697 LESTPPFF 8 Unmodified _LESTPPFF_ 0 0 0 REV__nc|ENSG00000262085|Q8NH06|OR1P1 REV__nc|ENSG00000262085|Q8NH06|OR1P1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 313.160371 936.459284 -0.14093 -4.4134E-05 0.11682 3.6583E-05 -0.024114 -7.5515E-06 313.1603399206214 100.39 0.75833 100.39 100 100.76 0 0.063328 0.00015889 NaN 1.8442 38 21 2 NaN NaN NaN NaN 0 NaN NaN 0 3991600 + 25981 24300 17144 17150 -0.01148708742425697 LESVPPPSA 9 Unmodified _LESVPPPSA_ 0 0 0 REV__ENSG00000130748|ENST00000253047|TMEM160 REV__ENSG00000130748|ENST00000253047|TMEM160 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 448.35003662109375 2 448.739825 895.465098 -0.32945 -0.00014784 0.52286 0.00023463 0.1934 8.6787E-05 448.73993550665296 40.822 0.53238 38.187 37.935 38.468 -2.6348 33 14 3 0 0 0 0.8319 1 7567 7567 1.8442 0 1 4143800 + 25982 16030 17145 17151 25680 25680 0.01318389769244277 LESWGLTLY 9 Unmodified _LESWGLTLY_ 0 0 0 ENST00000447282.5_1_12:53874080-53874200:+|nuORF ENST00000447282.5_1_12:53874080-53874200:+|nuORF ENST00000447282.5_1_12:53874080-53874200:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2650146484375 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 99.605 1 95.649 95.149 96.149 -3.9564 0 0 0 0.22251 1 19126 19126 16.942 0 1 25983 9947 17146 17152 25681 25681 0.012109208661513549 LESWLLAAWR 10 Unmodified _LESWLLAAWR_ 0 0 0 ENST00000472364.1_1_21:47976931-47978452:+|nuORF;ENST00000481883.1_1_21:47977314-47978452:+|nuORF ENST00000472364.1_1_21:47976931-47978452:+|nuORF ENST00000472364.1_1_21:47976931-47978452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7823486328125 2 622.842948 1243.67134 NaN NaN NaN NaN NaN NaN NaN 85.85 1 81.9 81.4 82.4 -3.9503 0 0 0 0.22588 1 16334 16334 6.2058 0.013936 1 25984 10224 17147 17153 25682 25682 0.05925382668374368 LESYEILLD 9 Unmodified _LESYEILLD_ 0 0 0 nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF;ENSG00000136051|ENST00000332180|WASHC4 nc|ENSG00000136051|Q2M389-2|WASHC4 nc|ENSG00000136051|Q2M389-2|WASHC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7713623046875 2 547.78443 1093.55431 0.366 0.00020049 -0.63918 -0.00035014 -0.27318 -0.00014965 548.2852237302033 160.18 0.32257 155.38 155.22 155.55 -4.7952 11 8 2 0 0 0 0.48644 1 31841 31841 20.454 1.1966 1 1149100 25985 3981 17148 17154 25683 25683 0.011271799381120218 LESYKLLSI 9 Unmodified _LESYKLLSI_ 0 0 0 REV__tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1 REV__tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.284912109375 2 533.313158 1064.61176 NaN NaN NaN NaN NaN NaN NaN 66.524 1 66.524 66.024 67.024 0 0 0 0 0.23508 1 12850 12850 11.64 2.2572 1 + 25986 25386 17149 17155 25684 25684 0.0820406693435416 LETEHSAVA 9 Unmodified _LETEHSAVA_ 0 0 0 ENST00000469195.5_3_6:35254110-35258154:+|nuORF ENST00000469195.5_3_6:35254110-35258154:+|nuORF ENST00000469195.5_3_6:35254110-35258154:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73779296875 2 478.737814 955.461075 -0.057915 -2.7726E-05 0.33598 0.00016085 0.27806 0.00013312 478.73789661254506 22.483 0.41999 22.483 22.293 22.713 0 19 11 2 0 0 0 0.029966 1 3814 3814 81.613 25.436 1 2336000 25987 10178 17150 17156 25685 25685 -0.018436997244634767 LETEHSAVA 9 Unmodified _LETEHSAVA_ 0 0 0 ENST00000469195.5_3_6:35254110-35258154:+|nuORF ENST00000469195.5_3_6:35254110-35258154:+|nuORF ENST00000469195.5_3_6:35254110-35258154:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7377014160156 2 478.737814 955.461075 0.91037 0.00043583 -0.85063 -0.00040723 0.059735 2.8597E-05 478.7373819475381 23.973 0.34893 22.419 22.184 22.533 -1.5532 16 9 2 0 0 0 0.10297 3 4131 4128;4131;4180 54.774 7.7473 1 1614700 25988 10178 17150 17156 25686;25687;25688 25687 -0.018436997244634767 LETEHSAVA 9 Unmodified _LETEHSAVA_ 0 0 0 ENST00000469195.5_3_6:35254110-35258154:+|nuORF ENST00000469195.5_3_6:35254110-35258154:+|nuORF ENST00000469195.5_3_6:35254110-35258154:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7372741699219 2 478.737814 955.461075 -0.024172 -1.1572E-05 0.53295 0.00025514 0.50878 0.00024357 478.73787869179006 23.899 0.34781 22.365 22.159 22.507 -1.5342 19 9 3 0 0 0 0.071377 2 3853 3853;3900 64.236 16.488 1 1473900 25989 10178 17150 17156 25689;25690 25689 -0.018436997244634767 LETEIEKF 8 Unmodified _LETEIEKF_ 0 0 0 nc|ENSG00000151849|Q9HC77-2|CENPJ;ENSG00000151849|ENST00000381884|CENPJ nc|ENSG00000151849|Q9HC77-2|CENPJ nc|ENSG00000151849|Q9HC77-2|CENPJ MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 505.1050109863281 2 504.76604 1007.51753 -0.096602 -4.8761E-05 -2.8735 -0.0014504 -2.9701 -0.0014992 505.26476552546296 95.072 0.37895 91.191 90.916 91.295 -3.881 14 10 2 0 0 0 0.99494 1 18254 18254 4.756 0 1 1814700 25990 4894 17151 17157 25691 25691 0.014069281122033317 LETELKQV 8 Unmodified _LETELKQV_ 0 0 0 ENSG00000161860|ENST00000293695|SYCE2 ENSG00000161860|ENST00000293695|SYCE2 ENSG00000161860|ENST00000293695|SYCE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7763366699219 2 480.274032 958.533512 0.14242 6.8398E-05 -0.25384 -0.00012191 -0.11143 -5.3515E-05 480.2739507243183 76.293 1.7046 72.659 72.136 73.841 -3.6337 147 48 5 0 0 0 0.25036 1 14477 14477 40.449 0 1 205490000 25991 5304 17152 17158 25692 25692 0.05258634349104341 LETERRYQ 8 Unmodified _LETERRYQ_ 0 0 0 ENST00000490970.5_1_9:35664414-35665166:-|nuORF;nc|ENSG00000137135|Q8N4T4-3|ARHGEF39;nc|ENSG00000137135|Q8N4T4-4|ARHGEF39;ENSG00000137135|ENST00000378387|ARHGEF39 ENST00000490970.5_1_9:35664414-35665166:-|nuORF ENST00000490970.5_1_9:35664414-35665166:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7841796875 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 63.128 1 60.13 59.63 60.63 -2.9975 0 0 0 0.18898 1 12190 12190 28.487 3.0875 1 25992 4068 17153 17159 25693 25693 0.008587693238041538 LETESFLDQ 9 Unmodified _LETESFLDQ_ 0 0 0 REV__ENSG00000103044|ENST00000569188|HAS3 REV__ENSG00000103044|ENST00000569188|HAS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.258056640625 2 541.256037 1080.49752 0.68657 0.00037161 -1.3981 -0.00075675 -0.71156 -0.00038513 541.2561394056131 120.39 0.1416 115.75 115.66 115.8 -4.645 5 3 2 0 0 0 0.40602 1 23111 23111 25.399 0 1 983380 + 25993 14861 17154 17160 25694 25694 -0.03950867618414122 LETGRPQDK 9 Unmodified _LETGRPQDK_ 0 0 0 ENST00000480809.5_1_3:185925300-186038248:-|nuORF;DGKG|p.M663Ifs*17|1|0.04|ENSG00000058866|chr3:186188308-186188308|C/-|frameshift_variant;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG ENST00000480809.5_1_3:185925300-186038248:-|nuORF ENST00000480809.5_1_3:185925300-186038248:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2750854492188 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 83.557 1 79.684 79.184 80.184 -3.8736 0 0 0 0.23277 1 15869 15869 13.906 0.39817 1 25994 823 17155 17161 25695 25695 0.021153669495106442 LETHLDKHNIY 11 Unmodified _LETHLDKHNIY_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.54388427734375 3 461.573614 1381.69901 0.37097 0.00017123 -0.16448 -7.5919E-05 0.20649 9.531E-05 461.5736486585802 152.41 0.53297 147.23 146.95 147.48 -5.1759 24 14 2 0 0 0 0.56281 1 29532 29532 19.987 3.7124 1 1986000 25995 7465 17156 17162 25696 25696 0.02343241137964469 LETHLDKHNIY 11 Unmodified _LETHLDKHNIY_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 461.573614 1381.69901 0.04038 1.8638E-05 0.23617 0.00010901 0.27655 0.00012765 461.9080122653246 151.82 0.57268 147.07 146.78 147.35 -4.7523 -0.099715 0.00030347 NaN 19.987 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4603400 25996 7465 17156 17162 0.02343241137964469 LETHLDKHNIY 11 Unmodified _LETHLDKHNIY_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 461.573614 1381.69901 0.097514 4.501E-05 -0.094966 -4.3834E-05 0.0025478 1.176E-06 461.5736868324722 152.44 0.68958 147.21 146.88 147.57 -5.2365 0.038569 -0.00015507 NaN 19.987 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2326100 25997 7465 17156 17162 0.02343241137964469 LETICLLLAY 10 Unmodified _LETICLLLAY_ 0 0 0 ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;PPP1CB|p.E217Rfs*3|1|0.29|ENSG00000213639|chr2:28788708-28788709|-/G|frameshift_variant;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000186298|ENST00000335007|PPP1CC ENSG00000186298|ENST00000335007|PPP1CC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.32275390625 2 576.322668 1150.63078 NaN NaN NaN NaN NaN NaN NaN 49.371 1 49.371 48.871 49.871 0 0 0 0 0.22588 1 9333 9333 6.7232 0.51738 1 25998 6228 17157 17163 25697 25697 0.06149280233717036 LETICLLLAY 10 Unmodified _LETICLLLAY_ 0 0 0 ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;PPP1CB|p.E217Rfs*3|1|0.29|ENSG00000213639|chr2:28788708-28788709|-/G|frameshift_variant;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000186298|ENST00000335007|PPP1CC ENSG00000186298|ENST00000335007|PPP1CC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.322265625 2 576.322668 1150.63078 NaN NaN NaN NaN NaN NaN NaN 72.181 1 68.642 68.142 69.142 -3.5385 0 0 0 0.22588 1 13693 13693 6.7232 2.3939 1 25999 6228 17157 17163 25698 25698 0.06149280233717036 LETKAVIPG 9 Unmodified _LETKAVIPG_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.2642822265625 2 464.279118 926.543683 0.58847 0.00027322 -1.0319 -0.00047908 -0.44341 -0.00020587 464.2785395880115 103.04 0.5061 99.014 98.77 99.277 -4.0212 18 13 2 0 0 0 0.59847 1 19762 19762 0.40827 0 1 1228000 26000 4410 17158 17164 25699 25699 0.07747242074322003 LETKAVIPG 9 Unmodified _LETKAVIPG_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.279118 926.543683 -0.15095 -7.0084E-05 -0.028283 -1.3131E-05 -0.17924 -8.3215E-05 464.2791230740405 103.16 0.40794 98.97 98.771 99.179 -4.1861 -0.023076 0.00042305 NaN 0.40827 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1099400 26001 4410 17158 17164 0.07747242074322003 LETKAVIPG 9 Unmodified _LETKAVIPG_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.279118 926.543683 0.19943 9.2591E-05 -0.43414 -0.00020156 -0.23471 -0.00010897 464.278885324381 103.34 0.39383 98.996 98.784 99.178 -4.346 0.0023461 4.6181E-05 NaN 0.40827 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1046100 26002 4410 17158 17164 0.07747242074322003 LETKLQLKP 9 Unmodified _LETKLQLKP_ 0 0 0 ENST00000568150.2_1_16:48657430-48778223:+|nuORF ENST00000568150.2_1_16:48657430-48778223:+|nuORF ENST00000568150.2_1_16:48657430-48778223:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5596923828125 3 357.225375 1068.6543 -0.27277 -9.7439E-05 0.2759 9.856E-05 0.0031384 1.1211E-06 357.2254085408395 20.958 0.20123 20.958 20.851 21.052 0 9 5 2 0 0 0 0.77797 1 3487 3487 2.7352 0.64919 1 311700 26003 11391 17159 17165 25700 25700 0.12271462062562932 LETLSALFSI 10 Unmodified _LETLSALFSI_ 0 0 0 REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7664184570312 2 547.310615 1092.60668 0.1193 6.5294E-05 1.3877 0.00075951 1.507 0.0008248 547.8130284297437 143.03 0.11398 138.01 137.93 138.04 -5.0261 4 2 2 0 0 0 0.61964 1 27580 27580 18.146 0 1 767930 + 26004 13384 17160 17166 25701 25701 0.0640776307170654 LETPLLIY 8 Unmodified _LETPLLIY_ 0 0 0 REV__sp|P09728|US10_HCMVAUniqueshortUS10glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US10PE=3SV=1 REV__sp|P09728|US10_HCMVAUniqueshortUS10glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US10PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2442626953125 2 481.283869 960.553185 NaN NaN NaN NaN NaN NaN NaN 49.435 1 46.429 45.929 46.929 -3.0068 0 0 0 0.21486 1 9071 9071 5.7604 1.4312 1 + 26005 24695 17161 17167 25702 25702 0.07133010359859782 LETRVIDL 8 Unmodified _LETRVIDL_ 0 0 0 REV__ENSG00000100814|ENST00000358932|CCNB1IP1 REV__ENSG00000100814|ENST00000358932|CCNB1IP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 480.23760986328125 2 479.782025 957.549496 0.36508 0.00017516 0.11021 5.2878E-05 0.4753 0.00022804 479.78190684470326 69.316 0.22417 65.78 65.575 65.799 -3.5362 8 5 2 0 0 0 0.70613 1 13018 13018 13.508 0.97634 1 475580 + 26006 14742 17162 17168 25703 25703 0.06902340586009359 LETRVIDL 8 Unmodified _LETRVIDL_ 0 0 0 REV__ENSG00000100814|ENST00000358932|CCNB1IP1 REV__ENSG00000100814|ENST00000358932|CCNB1IP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.782025 957.549496 0.36508 0.00017516 0.11021 5.2878E-05 0.4753 0.00022804 479.78190684470326 69.316 0.22417 65.78 65.575 65.799 -3.5362 0 0 NaN 13.508 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 475580 + 26007 14742 17162 17168 0.06902340586009359 LEVDHFMHCN 10 Unmodified _LEVDHFMHCN_ 0 0 0 ENSG00000126010|ENST00000380289|GRPR ENSG00000126010|ENST00000380289|GRPR ENSG00000126010|ENST00000380289|GRPR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7645874023438 2 622.762983 1243.51141 NaN NaN NaN NaN NaN NaN NaN 168.36 1 168.36 167.86 168.86 0 0 0 0 2.8426 1 34473 34473 0.013265 0 1 26008 3412 17163 17169 25704 25704 -0.10060236662616262 LEVEPFEERI 10 Unmodified _LEVEPFEERI_ 0 0 0 REV__tr|U7T3T1|U7T3T1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00248PE=4SV=1 REV__tr|U7T3T1|U7T3T1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00248PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7799072265625 2 630.82716 1259.63977 NaN NaN NaN NaN NaN NaN NaN 168.99 1 164.2 163.7 164.7 -4.7898 0 0 0 0.22588 1 34199 34199 6.2058 0.9089 1 + 26009 25376 17164 17170 25705 25705 0.02033345123777508 LEVEQVIPL 9 Unmodified _LEVEQVIPL_ 0 0 0 ENST00000487257.1_2_3:57545269-57545728:+|nuORF;ENSG00000174840|ENST00000311180|PDE12 ENST00000487257.1_2_3:57545269-57545728:+|nuORF ENST00000487257.1_2_3:57545269-57545728:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 520.8152465820312 2 520.305332 1038.59611 -0.49859 -0.00025942 0.71475 0.00037189 0.21615 0.00011247 520.3056011278405 173.59 0.28484 168.69 168.5 168.79 -4.8977 17 7 4 0 0 0 0.25384 1 34478 34478 2.8827 0 1 81053000 26010 6374 17165 17171 25706 25706 0.07835780417281057 LEVEQVIPL 9 Unmodified _LEVEQVIPL_ 0 0 0 ENST00000487257.1_2_3:57545269-57545728:+|nuORF;ENSG00000174840|ENST00000311180|PDE12 ENST00000487257.1_2_3:57545269-57545728:+|nuORF ENST00000487257.1_2_3:57545269-57545728:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 520.305332 1038.59611 0.044402 2.3103E-05 0.1146 5.9628E-05 0.159 8.2731E-05 520.3052985003885 173.37 0.30888 168.58 168.41 168.72 -4.7898 -0.05507 -4.1872E-05 NaN 2.8827 22 8 4 NaN NaN NaN NaN 0 NaN NaN 0 72420000 26011 6374 17165 17171 0.07835780417281057 LEVEQVIPL 9 Unmodified _LEVEQVIPL_ 0 0 0 ENST00000487257.1_2_3:57545269-57545728:+|nuORF;ENSG00000174840|ENST00000311180|PDE12 ENST00000487257.1_2_3:57545269-57545728:+|nuORF ENST00000487257.1_2_3:57545269-57545728:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 520.305332 1038.59611 0.55995 0.00029134 -0.27046 -0.00014072 0.28949 0.00015062 520.3050472720788 173.51 0.30365 168.63 168.44 168.74 -4.881 -0.0026279 -0.00044257 NaN 2.8827 22 8 4 NaN NaN NaN NaN 0 NaN NaN 0 69662000 26012 6374 17165 17171 0.07835780417281057 LEVERQRRLER 11 Unmodified _LEVERQRRLER_ 0 0 0 ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000198176|Q14186-2|TFDP1;ENST00000544902.5_1_13:114277566-114294579:+|nuORF;ENSG00000198176|ENST00000375370|TFDP1 ENST00000453595.1_1_X:36980271-36981156:-|nuORF ENST00000453595.1_1_X:36980271-36981156:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3759765625 2 742.42623 1482.83791 NaN NaN NaN NaN NaN NaN NaN 172.37 1 172.37 171.87 172.87 0 0 0 0 0.23018 1 35583 35583 8.1555 0 1 26013 10006 17166 17172 25707 25707 0.11580203826133584 LEVHDCGR 8 Unmodified _LEVHDCGR_ 0 0 0 SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1645812988281 3 310.14836 927.42325 0.29438 9.1301E-05 0.62985 0.00019535 0.92423 0.00028665 310.1484806840251 72.184 0.42979 68.557 68.301 68.731 -3.6275 16 11 2 0 0 0 8448 1 13582 13582 0.0082765 0 1 595900 26014 25698 17167 17173 25708 25708 -0.0433648919092775 LEVIRAFYSY 10 Unmodified _LEVIRAFYSY_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7657470703125 2 630.834788 1259.65502 NaN NaN NaN NaN NaN NaN NaN 95.954 1 92.073 91.573 92.573 -3.881 0 0 0 0.22588 1 18414 18414 6.7232 0.51738 1 26015 4410 17168 17174 25709 25709 0.03558256711630747 LEVKWKWLKE 10 Unmodified _LEVKWKWLKE_ 0 0 0 REV__CCBL1|p.R416W|1|0.38|ENSG00000171097|chr9:128833607-128833607|G/A|missense_variant REV__CCBL1|p.R416W|1|0.38|ENSG00000171097|chr9:128833607-128833607|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7582092285156 3 453.599212 1357.77581 -0.7074 -0.00032088 -0.073231 -3.3217E-05 -0.78064 -0.0003541 453.59913489192667 14.127 0.20986 12.954 12.897 13.107 -1.173 6 5 2 0 0 0 0.53419 1 1906 1906 0.0013812 0 1 289260 + 26016 13278 17169 17175 25710 25710 0.11123084425071283 LEVLKKKKRFA 11 Unmodified _LEVLKKKKRFA_ 0 0 0 REV__ENST00000601728.1_1_19:23309373-23309649:-|nuORF REV__ENST00000601728.1_1_19:23309373-23309649:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7535705566406 3 453.966007 1358.87619 NaN NaN NaN NaN NaN NaN NaN 93.259 1 89.115 88.615 89.615 -4.1435 0 0 0 0.22632 1 17774 17774 0 0 1 + 26017 23421 17170 17176 25711 25711 0.21110741478742057 LEVLVKTL 8 Unmodified _LEVLVKTL_ 0 0 0 BAG6|p.A35Pfs*3|1|0.35|ENSG00000204463|chr6:31651661-31651661|C/-|frameshift_variant;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 BAG6|p.A35Pfs*3|1|0.35|ENSG00000204463|chr6:31651661-31651661|C/-|frameshift_variant BAG6|p.A35Pfs*3|1|0.35|ENSG00000204463|chr6:31651661-31651661|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2294006347656 2 457.799686 913.584819 NaN NaN NaN NaN NaN NaN NaN 128.82 1 124.08 123.58 124.58 -4.7408 0 0 0 0.16809 1 24787 24787 36.506 26.962 1 26018 294 17171 17177 25712 25712 0.12457003113809151 LEVLVKTL 8 Unmodified _LEVLVKTL_ 0 0 0 BAG6|p.A35Pfs*3|1|0.35|ENSG00000204463|chr6:31651661-31651661|C/-|frameshift_variant;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 BAG6|p.A35Pfs*3|1|0.35|ENSG00000204463|chr6:31651661-31651661|C/-|frameshift_variant BAG6|p.A35Pfs*3|1|0.35|ENSG00000204463|chr6:31651661-31651661|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2552490234375 2 457.799686 913.584819 NaN NaN NaN NaN NaN NaN NaN 128.97 1 124.23 123.73 124.73 -4.7408 0 0 0 0.16809 1 24817 24817 26.884 6.43 1 26019 294 17171 17177 25713 25713 0.12457003113809151 LEVRESINGY 10 Unmodified _LEVRESINGY_ 0 0 0 REV__ENSG00000178234|ENST00000430044|GALNT11 REV__ENSG00000178234|ENST00000430044|GALNT11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2510986328125 2 590.303852 1178.59315 -0.036681 -2.1653E-05 0.51206 0.00030227 0.47538 0.00028062 590.3040167028013 53.211 0.47424 50.116 49.865 50.339 -3.0954 33 13 3 0 0 0 0.744 1 9793 9793 6.7232 0.99131 1 2826100 + 26020 18596 17172 17178 25714 25714 0.010999052924944408 LEVRKCLL 8 Unmodified _LEVRKCLL_ 0 0 0 REV__ENST00000485226.1_1_1:26227942-26230296:-|nuORF REV__ENST00000485226.1_1_1:26227942-26230296:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 325.2122497558594 3 325.200284 972.579022 NaN NaN NaN NaN NaN NaN NaN 103.02 1 99.002 98.502 99.502 -4.0212 0 0 0 0.21486 1 19805 19805 0.40072 0 1 + 26021 22217 17173 17179 25715 25715 0.09163581330506076 LEVSLLEKY 9 Unmodified _LEVSLLEKY_ 0 0 0 ENST00000411828.5_1_21:40547518-40555177:-|nuORF;nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1;PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant ENST00000411828.5_1_21:40547518-40555177:-|nuORF ENST00000411828.5_1_21:40547518-40555177:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7691650390625 2 547.310615 1092.60668 0.33091 0.00018111 1.1459 0.00062719 1.4769 0.0008083 547.3111954198938 138.45 0.44693 138.45 138.21 138.66 0 14 12 2 0 0 0 0.30909 1 27459 27459 41.956 3.78 1 5150700 26022 9579 17174 17180 25716 25716 0.06407763071729278 LEVSLLEKY 9 Unmodified _LEVSLLEKY_ 0 0 0 ENST00000411828.5_1_21:40547518-40555177:-|nuORF;nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1;PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant ENST00000411828.5_1_21:40547518-40555177:-|nuORF ENST00000411828.5_1_21:40547518-40555177:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7709350585938 2 547.310615 1092.60668 0.36625 0.00020045 -0.81588 -0.00044654 -0.44964 -0.00024609 547.3101257524543 143.16 0.66309 138.26 137.95 138.61 -4.8982 27 18 2 0 0 0 0.10699 1 27605 27605 53.404 25.775 1 1899000 26023 9579 17174 17180 25717 25717 0.06407763071729278 LEVSLLEKY 9 Unmodified _LEVSLLEKY_ 0 0 0 ENST00000411828.5_1_21:40547518-40555177:-|nuORF;nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1;PSMG1|p.T194Hfs*13|1|0.12|ENSG00000183527|chr21:39178524-39178524|T/-|frameshift_variant ENST00000411828.5_1_21:40547518-40555177:-|nuORF ENST00000411828.5_1_21:40547518-40555177:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.310615 1092.60668 0.1193 6.5294E-05 1.3877 0.00075951 1.507 0.0008248 547.8130284297437 143.03 0.11398 138.01 137.93 138.04 -5.0261 -0.12556 0.0019017 NaN 53.404 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 767930 26024 9579 17174 17180 0.06407763071729278 LEVTFGKL 8 Unmodified _LEVTFGKL_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2;ENST00000529624.5_3_15:28877823-28916776:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000424611.5_1_15:20644728-20658919:-|nuORF;HERC2|p.G2202Afs*8|1|0.2|ENSG00000128731|chr15:28213923-28213923|C/-|frameshift_variant;HERC2|p.Y1736H|1|0.42|ENSG00000128731|chr15:28229261-28229261|A/G|missense_variant ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7696838378906 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 76.031 1 72.309 71.809 72.809 -3.7227 0 0 0 0.21486 1 14390 14390 12.532 0 1 26025 3540 17175 17181 25718 25718 0.06567857045627079 LEVVSAWL 8 Unmodified _LEVVSAWL_ 0 0 0 REV__nc|ENSG00000164828|O94901-3|SUN1 REV__nc|ENSG00000164828|O94901-3|SUN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22161865234375 2 458.760561 915.506569 0.050545 2.3188E-05 0.24414 0.000112 0.29468 0.00013519 458.7607287395407 129.05 0.63153 124.23 123.91 124.54 -4.817 23 17 2 0 0 0 0.89552 1 24712 24712 19.439 0 1 1342000 + 26026 20707 17176 17182 25719 25719 0.04543570528562668 LEWIQWRERQW 11 Unmodified _LEWIQWRERQW_ 0 0 0 REV__ENST00000489330.6_1_X:11156985-11160533:-|nuORF REV__ENST00000489330.6_1_X:11156985-11160533:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7809448242188 3 543.947675 1628.82119 NaN NaN NaN NaN NaN NaN NaN 162.69 1 157.9 157.4 158.4 -4.7898 0 0 0 0.22632 1 32381 32381 0.00056442 0 1 + 26027 14070 17177 17183 25720 25720 0.03193702940143339 LEWIVMLY 8 Unmodified _LEWIVMLY_ 0 0 0 REV__nc|ENSG00000162843|B1ANS9-2|WDR64 REV__nc|ENSG00000162843|B1ANS9-2|WDR64 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2820434570312 2 533.785721 1065.55689 0.23284 0.00012429 -4.0148 -0.002143 -3.7819 -0.0020187 533.7835266175308 130.71 0.16777 125.94 125.8 125.97 -4.7725 7 4 2 0 0 0 0.98792 1 25140 25140 9.3474 3.1417 1 670130 + 26028 17531 17178 17184 25721 25721 0.026733568620784354 LEWNLSSLS 9 Unmodified _LEWNLSSLS_ 0 0 0 REV__IKBKE|p.R525W|1|0.34|ENSG00000263528|chr1:206485263-206485263|C/T|missense_variant REV__IKBKE|p.R525W|1|0.34|ENSG00000263528|chr1:206485263-206485263|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 524.2880859375 2 524.769114 1047.52368 0.02344 1.23E-05 0.55096 0.00028913 0.5744 0.00030143 525.2708141245312 159.46 0.43022 154.67 154.37 154.8 -4.7952 14 11 2 0 0 0 0.79204 1 31695 31695 3.9444 0 1 1432200 + 26029 23652 17179 17185 25722 25722 0.001814463437312952 LEWRRPLRRL 10 Unmodified _LEWRRPLRRL_ 0 0 0 ENST00000591473.1_1_19:36705638-36705767:-|nuORF ENST00000591473.1_1_19:36705638-36705767:-|nuORF ENST00000591473.1_1_19:36705638-36705767:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24853515625 3 465.621233 1393.84187 0.035179 1.638E-05 -0.67663 -0.00031505 -0.64145 -0.00029867 465.6206932736481 96.008 0.48374 96.008 95.836 96.32 0 16 13 2 0 0 0 0.91149 1 18835 18835 3.8763 1.2451 1 1206100 26030 11623 17180 17186 25723 25723 0.16070338110489502 LEWVLLLLGP 10 Unmodified _LEWVLLLLGP_ 0 0 0 nc|ENSG00000005961|P08514-3|ITGA2B;nc|ENSG00000005961|P08514-2|ITGA2B;ENSG00000005961|ENST00000262407|ITGA2B nc|ENSG00000005961|P08514-3|ITGA2B nc|ENSG00000005961|P08514-3|ITGA2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3360595703125 2 576.854993 1151.69543 0.029157 1.682E-05 0.95969 0.0005536 0.98885 0.00057042 576.8552440012996 78.023 0.17487 74.559 74.465 74.64 -3.4633 6 4 2 0 0 0 0.89521 1 15218 15218 3.5965 0 1 950070 26031 1001 17181 17187 25724 25724 0.1256522310204673 LEWVLSRY 8 Unmodified _LEWVLSRY_ 0 0 0 REV__nc|ENSG00000129566|Q99973-2|TEP1 REV__nc|ENSG00000129566|Q99973-2|TEP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2747802734375 2 533.290017 1064.56548 NaN NaN NaN NaN NaN NaN NaN 153.58 1 153.58 153.08 154.08 0 0 0 0 0.21486 1 30773 30773 11.64 2.2929 1 + 26032 15967 17182 17188 25725 25725 0.03578046822894976 LEYAVFTPF 9 Unmodified _LEYAVFTPF_ 0 0 0 REV__ENSG00000150403|ENST00000434316|TMCO3 REV__ENSG00000150403|ENST00000434316|TMCO3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7794799804688 2 543.778951 1085.54335 NaN NaN NaN NaN NaN NaN NaN 112.55 1 108.28 107.78 108.78 -4.2725 0 0 0 0.19512 1 21673 21673 12.241 2.1667 1 + 26033 17031 17183 17189 25726 25726 0.003998223544613211 LEYEDISK 8 Unmodified _LEYEDISK_ 0 0 0 ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1;ASTN1|p.L945Pfs*9|1|0.49|ENSG00000152092|chr1:176894668-176894669|-/G|frameshift_variant;nc|ENSG00000152092|O14525-3|ASTN1 ENSG00000152092|ENST00000361833|ASTN1 ENSG00000152092|ENST00000361833|ASTN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.99951171875 3 332.834324 995.481142 -0.38716 -0.00012886 1.9225 0.00063988 1.5353 0.00051102 332.8349004267432 24.162 0.26854 24.162 23.965 24.234 0 11 7 2 0 0 0 1.0267 1 4147 4147 0.35063 0 1 360830 26034 4901 17184 17190 25727 25727 -0.016779487845155927 LEYEDISK 8 Unmodified _LEYEDISK_ 0 0 0 ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1;ASTN1|p.L945Pfs*9|1|0.49|ENSG00000152092|chr1:176894668-176894669|-/G|frameshift_variant;nc|ENSG00000152092|O14525-3|ASTN1 ENSG00000152092|ENST00000361833|ASTN1 ENSG00000152092|ENST00000361833|ASTN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 332.834324 995.481142 0.10666 3.55E-05 0.6183 0.00020579 0.72496 0.00024129 332.8346230651262 25.814 0.2726 24.179 24.029 24.301 -1.6347 0.0084704 -0.00067445 NaN 0.35063 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 452860 26035 4901 17184 17190 -0.016779487845155927 LEYGRSLED 9 Unmodified _LEYGRSLED_ 0 0 0 ENST00000477632.5_1_2:70037634-70052644:+|nuORF ENST00000477632.5_1_2:70037634-70052644:+|nuORF ENST00000477632.5_1_2:70037634-70052644:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2633056640625 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 119.59 1 114.94 114.44 115.44 -4.645 0 0 0 0.0914 1 22953 22953 39.95 5.548 1 26036 10306 17185 17191 25728 25728 -0.028280455242793323 LEYLDMVVN 9 Unmodified _LEYLDMVVN_ 0 0 0 ENSG00000160870|ENST00000336374|CYP3A7;ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;nc|ENSG00000160870|P24462-2|CYP3A7 ENSG00000160870|ENST00000336374|CYP3A7 ENSG00000160870|ENST00000336374|CYP3A7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7720947265625 2 548.273175 1094.5318 0.30221 0.00016569 1.3592 0.00074521 1.6614 0.00091091 548.2741556377193 100.39 0.54636 96.098 95.816 96.362 -4.297 18 15 2 0 0 0 0.52242 1 19173 19173 29.082 19.008 1 1803800 26037 5271 17186 17192 25729 25729 -0.011687427311699139 LEYLIHYYNKK 11 Unmodified _LEYLIHYYNKK_ 0 0 0 REV__ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant REV__ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.4004516601562 2 742.400827 1482.7871 NaN NaN NaN NaN NaN NaN NaN 170.14 1 165.35 164.85 165.85 -4.7898 0 0 0 0.23018 1 34512 34512 8.1555 0.54658 1 + 26038 14280 17187 17193 25730 25730 0.0650186172854319 LEYLLSLDL 9 Unmodified _LEYLLSLDL_ 0 0 0 THAP9|p.N850Mfs*7|1|0.4|ENSG00000168152|chr4:82918757-82918757|A/-|frameshift_variant;ENSG00000168152|ENST00000302236|THAP9;THAP9|p.P499S|1|0.1|ENSG00000168152|chr4:82917707-82917707|C/T|missense_variant THAP9|p.N850Mfs*7|1|0.4|ENSG00000168152|chr4:82918757-82918757|A/-|frameshift_variant THAP9|p.N850Mfs*7|1|0.4|ENSG00000168152|chr4:82918757-82918757|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20697021484375 3 360.205869 1077.59578 NaN NaN NaN NaN NaN NaN NaN 112.66 1 108.38 107.88 108.88 -4.2725 0 0 0 0.19654 1 21692 21692 0.12781 0 1 26039 5886 17188 17194 25731 25731 0.060083606974330905 LEYLLSLDL 9 Unmodified _LEYLLSLDL_ 0 0 0 THAP9|p.N850Mfs*7|1|0.4|ENSG00000168152|chr4:82918757-82918757|A/-|frameshift_variant;ENSG00000168152|ENST00000302236|THAP9;THAP9|p.P499S|1|0.1|ENSG00000168152|chr4:82917707-82917707|C/T|missense_variant THAP9|p.N850Mfs*7|1|0.4|ENSG00000168152|chr4:82918757-82918757|A/-|frameshift_variant THAP9|p.N850Mfs*7|1|0.4|ENSG00000168152|chr4:82918757-82918757|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20654296875 3 360.205869 1077.59578 NaN NaN NaN NaN NaN NaN NaN 115.84 1 111.48 110.98 111.98 -4.3585 0 0 0 0.19654 1 22299 22299 0.40827 0 1 26040 5886 17188 17194 25732 25732 0.060083606974330905 LEYSEPNFS 9 Unmodified _LEYSEPNFS_ 0 0 0 REV__nc|ENSG00000086475|P49903-2|SEPHS1 REV__nc|ENSG00000086475|P49903-2|SEPHS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7894287109375 2 543.242929 1084.47131 0.28535 0.00015501 2.2914 0.0012448 2.5767 0.0013998 543.7454587749799 116.12 0.78728 111.54 111.01 111.8 -4.5815 32 22 2 0 0 0 0.5059 1 22215 22215 19.257 1.122 1 1164100 + 26041 14484 17189 17195 25733 25733 -0.06755136789888638 LEYVAEPTLEP 11 Unmodified _LEYVAEPTLEP_ 0 0 0 ENSG00000171798|ENST00000304613|KNDC1;nc|ENSG00000171798|Q76NI1-4|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7658081054688 2 630.821544 1259.62853 NaN NaN NaN NaN NaN NaN NaN 172.77 1 172.77 172.27 173.27 0 0 0 0 0.224 1 35688 35688 13.042 0.51092 1 26042 6171 17190 17196 25734 25734 0.009105230296199807 LEYWFFPMK 9 Unmodified _LEYWFFPMK_ 0 0 0 ENST00000554189.5_1_14:93180220-93180758:-|nuORF ENST00000554189.5_1_14:93180220-93180758:-|nuORF ENST00000554189.5_1_14:93180220-93180758:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7581787109375 2 630.809728 1259.6049 NaN NaN NaN NaN NaN NaN NaN 171.8 1 171.8 171.3 172.3 0 0 0 0 0.23508 1 35422 35422 7.9102 1.187 1 26043 11215 17191 17197 25735 25735 -0.01451569217897486 LEYYVHQM 8 Unmodified _LEYYVHQM_ 0 0 0 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2655029296875 2 541.75241 1081.49027 NaN NaN NaN NaN NaN NaN NaN 86.927 1 82.977 82.477 83.477 -3.9503 0 0 0 0.16809 1 16553 16553 36.506 34.814 1 26044 3151 17192 17198 25736 25736 -0.047218786998428186 LFAGAGQS 8 Unmodified _LFAGAGQS_ 0 0 0 ENST00000260386.6_1_15:41795195-41795354:+|nuORF ENST00000260386.6_1_15:41795195-41795354:+|nuORF ENST00000260386.6_1_15:41795195-41795354:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21246337890625 2 375.692678 749.370804 -0.44145 -0.00016585 0.4616 0.00017342 0.020147 7.5689E-06 375.6927806863397 53.104 1.044 50.221 49.657 50.701 -2.8837 64 29 3 0 0 0 0.89147 1 10061 10061 0.063987 0 1 8800800 26045 8281 17193 17199 25737 25737 -0.013907042622236077 LFAIIEKE 8 Unmodified _LFAIIEKE_ 0 0 0 tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1 tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1 tr|U7SRW6|U7SRW6_FUSNUDiamineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01453PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78253173828125 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 85.522 1 85.522 85.022 86.022 0 0 0 0 0.23312 1 16691 16691 6.2058 0 1 26046 26085 17194 17200 25738 25738 0.06612126217089553 LFAKEPSQ 8 Unmodified _LFAKEPSQ_ 0 0 0 REV__nc|ENSG00000226807|Q6ZUA9|MROH5 REV__nc|ENSG00000226807|Q6ZUA9|MROH5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2475280761719 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 159.73 1 159.73 159.23 160.23 0 0 0 0 0.21486 1 32072 32072 8.5933 0 1 + 26047 24279 17195 17201 25739 25739 0.018580960061512997 LFAKSIIKV 9 Unmodified _LFAKSIIKV_ 0 0 0 REV__ENST00000602402.5_1_13:96444840-96445038:+|nuORF REV__ENST00000602402.5_1_13:96444840-96445038:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 509.2549743652344 2 509.836603 1017.65865 -0.3291 -0.00016779 0.66214 0.00033758 0.33303 0.00016979 509.8368418867447 60.237 0.60269 56.923 56.622 57.224 -3.3139 34 16 3 0 0 0 0.60575 1 11193 11193 0.073264 0 1 3296400 + 26048 23426 17196 17202 25740 25740 0.150529712761454 LFAQQVAW 8 Unmodified _LFAQQVAW_ 0 0 0 REV__ENST00000483497.6_2_9:134065850-134070628:+|nuORF REV__ENST00000483497.6_2_9:134065850-134070628:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7880554199219 2 481.758352 961.502152 NaN NaN NaN NaN NaN NaN NaN 35.8 1 35.8 35.3 36.3 0 0 0 0 0.21022 1 6583 6583 17.087 5.9721 1 + 26049 22200 17197 17203 25741 25741 0.019861061056644758 LFAQSKQWS 9 Unmodified _LFAQSKQWS_ 0 0 0 REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|93|2|sense REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|93|2|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.768310546875 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 145.99 1 141.3 140.8 141.8 -4.6868 0 0 0 0.23508 1 28948 28948 10.824 1.4765 1 + 26050 23776 17198 17204 25742 25742 0.012608588175226032 LFAWQWPF 8 Unmodified _LFAWQWPF_ 0 0 0 REV__nc|ENSG00000164037|Q4ZJI4-3|SLC9B1 REV__nc|ENSG00000164037|Q4ZJI4-3|SLC9B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7808837890625 2 547.776545 1093.53854 0.49751 0.00027253 4.0171 0.0022005 4.5146 0.002473 547.778933852864 118.56 0.1777 114.15 114 114.18 -4.4088 7 4 2 0 0 0 0.69085 1 22806 22806 15.768 1.1865 1 1080300 + 26051 17637 17199 17205 25743 25743 -0.004490169976179459 LFCFFPLAH 9 Unmodified _LFCFFPLAH_ 0 0 0 REV__ALG6|p.F398Lfs*2|1|0.29|ENSG00000088035|chr1:63428989-63428989|T/-|frameshift_variant REV__ALG6|p.F398Lfs*2|1|0.29|ENSG00000088035|chr1:63428989-63428989|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7871704101562 2 547.778231 1093.54191 0.34907 0.00019121 2.043 0.0011191 2.3921 0.0013103 547.7796671507286 141.44 0.66808 136.57 136.15 136.82 -4.8678 29 18 2 0 0 0 0.65439 1 27207 27207 9.3474 0 1 2777700 + 26052 13011 17200 17206 25744 25744 -0.0011209021527065488 LFCQWQLWVGV 11 Unmodified _LFCQWQLWVGV_ 0 0 0 REV__ENST00000460910.5_1_3:42642152-42652626:+|nuORF REV__ENST00000460910.5_1_3:42642152-42652626:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2392578125 3 460.237398 1377.69036 NaN NaN NaN NaN NaN NaN NaN 74.09 1 70.496 69.996 70.996 -3.594 0 0 0 0.22632 1 14065 14065 0.026206 0 1 + 26053 21887 17201 17207 25745 25745 0.01662595967741254 LFCSAPHV 8 Unmodified _LFCSAPHV_ 0 0 0 REV__ENST00000607947.1_1_20:1306067-1340416:+|nuORF REV__ENST00000607947.1_1_20:1306067-1340416:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21734619140625 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 73.29 1 73.29 72.79 73.79 0 0 0 0 0.21486 1 14222 14222 10.183 1.5901 1 + 26054 23475 17202 17208 25746 25746 -0.019854982088986617 LFCWILMII 9 Unmodified _LFCWILMII_ 0 0 0 nc|ENSG00000007062|O43490-5|PROM1;nc|ENSG00000007062|O43490-3|PROM1;nc|ENSG00000007062|O43490-4|PROM1;nc|ENSG00000007062|O43490-6|PROM1;nc|ENSG00000007062|O43490-7|PROM1;nc|ENSG00000007062|O43490-2|PROM1;ENSG00000007062|ENST00000447510|PROM1 nc|ENSG00000007062|O43490-5|PROM1 nc|ENSG00000007062|O43490-5|PROM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3214721679688 2 576.321417 1150.62828 NaN NaN NaN NaN NaN NaN NaN 153.56 1 148.79 148.29 149.29 -4.7684 0 0 0 0.19697 1 30516 30516 0.12781 0 1 26055 1014 17203 17209 25747 25747 0.05899153295081305 LFDCFALQ 8 Unmodified _LFDCFALQ_ 0 0 0 REV__ENSG00000255150|ENST00000527879|EID3 REV__ENSG00000255150|ENST00000527879|EID3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73822021484375 2 478.730946 955.447339 NaN NaN NaN NaN NaN NaN NaN 92.269 1 92.269 91.769 92.769 0 0 0 0 0.22692 1 18038 18038 0.62683 0 1 + 26056 19852 17204 17210 25748 25748 -0.032166487572681035 LFDCIEYY 8 Unmodified _LFDCIEYY_ 0 0 0 REV__ENSG00000133048|ENST00000255409|CHI3L1 REV__ENSG00000133048|ENST00000255409|CHI3L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2741088867188 2 533.233519 1064.45248 NaN NaN NaN NaN NaN NaN NaN 65.194 1 61.91 61.41 62.41 -3.2832 0 0 0 0.22666 1 12251 12251 2.643 0 1 + 26057 16151 17205 17211 25749 25749 -0.07716389685310787 LFDDIAKEM 9 Unmodified _LFDDIAKEM_ 0 0 0 ENSG00000165490|ENST00000533655|DDIAS ENSG00000165490|ENST00000533655|DDIAS ENSG00000165490|ENST00000533655|DDIAS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2626342773438 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 158.27 1 153.48 152.98 153.98 -4.7952 0 0 0 0.23277 1 31472 31472 13.906 3.7227 1 26058 5632 17206 17212 25750 25750 -0.02089029248213592 LFDEKTLI 8 Unmodified _LFDEKTLI_ 0 0 0 REV__ENSG00000256870|ENST00000536262|SLC5A8 REV__ENSG00000256870|ENST00000536262|SLC5A8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2708740234375 2 489.778951 977.543348 0.090133 4.4145E-05 0.13415 6.5705E-05 0.22429 0.00010985 489.77895774158316 148.26 0.62529 143.2 142.84 143.47 -5.0595 32 17 2 0 0 0 0.60622 1 28656 28656 21.747 0 1 3226200 + 26059 19868 17207 17213 25751 25751 0.053678223544807224 LFDEPHYWP 9 Unmodified _LFDEPHYWP_ 0 0 0 REV__nc|ENSG00000167995|O76090-3|BEST1 REV__nc|ENSG00000167995|O76090-3|BEST1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2791748046875 2 602.277106 1202.53966 NaN NaN NaN NaN NaN NaN NaN 72.752 1 69.213 68.713 69.713 -3.5385 0 0 0 0.19632 1 13795 13795 0.073264 0 1 + 26060 24153 17208 17214 25752 25752 -0.053508474193904476 LFDLPYIRS 9 Unmodified _LFDLPYIRS_ 0 0 0 ENST00000587065.2_2_19:34895769-34912519:+|nuORF ENST00000587065.2_2_19:34895769-34912519:+|nuORF ENST00000587065.2_2_19:34895769-34912519:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2088317871094 3 375.209725 1122.60735 NaN NaN NaN NaN NaN NaN NaN 155.77 1 150.99 150.49 151.49 -4.7791 0 0 0 0.23508 1 30966 30966 4.1895 0.31317 1 26061 11558 17209 17215 25753 25753 0.05094602511417179 LFDLQKSSQ 9 Unmodified _LFDLQKSSQ_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2781982421875 2 533.282389 1064.55022 -0.10276 -5.4801E-05 0.67824 0.00036169 0.57548 0.00030689 533.2826239749262 92.245 0.60049 92.245 91.876 92.477 0 27 16 2 0 0 0 0.19983 1 17991 17991 7.4771 2.7611 1 1894600 26062 3070 17210 17216 25754 25754 0.020531352350417365 LFDTALLLL 9 Unmodified _LFDTALLLL_ 0 0 0 REV__ENSG00000275591|ENST00000618742|XKR5 REV__ENSG00000275591|ENST00000618742|XKR5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.2122497558594 3 340.210954 1017.61103 NaN NaN NaN NaN NaN NaN NaN 129 1 124.26 123.76 124.76 -4.7408 0 0 0 0.23508 1 24825 24825 0.26902 0 1 + 26063 19935 17211 17217 25755 25755 0.1029327228530974 LFEEFANYE 9 Unmodified _LFEEFANYE_ 0 0 0 ENSG00000090020|ENST00000263980|SLC9A1;nc|ENSG00000090020|P19634-2|SLC9A1 ENSG00000090020|ENST00000263980|SLC9A1 ENSG00000090020|ENST00000263980|SLC9A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7088623046875 3 387.841478 1160.50261 -0.012418 -4.8163E-06 0.12033 4.667E-05 0.10792 4.1854E-05 387.8414395310148 24.125 0.31593 22.591 22.398 22.714 -1.5342 14 8 2 0 0 0 0.87797 1 3889 3889 6.6304 5.0381 1 935710 26064 1775 17212 17218 25756 25756 -0.07122563755797273 LFEEYKWRNRE 11 Unmodified _LFEEYKWRNRE_ 0 0 0 REV__nc|ENSG00000204406|Q9P267|MBD5 REV__nc|ENSG00000204406|Q9P267|MBD5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3936767578125 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 123.03 1 118.45 117.95 118.95 -4.5757 0 0 0 0.23698 1 24254 24254 1.3295 0 1 + 26065 19532 17213 17219 25757 25757 0.011940039493310906 LFEEYKWRNRE 11 Unmodified _LFEEYKWRNRE_ 0 0 0 REV__nc|ENSG00000204406|Q9P267|MBD5 REV__nc|ENSG00000204406|Q9P267|MBD5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3942260742188 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 115.81 1 111.45 110.95 111.95 -4.3585 0 0 0 0.22632 1 22294 22294 0.026206 0 1 + 26066 19532 17213 17219 25758 25758 0.011940039493310906 LFEHFLKF 8 Unmodified _LFEHFLKF_ 0 0 0 ENSG00000196083|ENST00000447382|IL1RAP;nc|ENSG00000196083|Q9NPH3-5|IL1RAP;nc|ENSG00000196083|Q9NPH3-3|IL1RAP;nc|ENSG00000196083|Q9NPH3-2|IL1RAP ENSG00000196083|ENST00000447382|IL1RAP ENSG00000196083|ENST00000447382|IL1RAP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2799072265625 2 540.797478 1079.5804 0.33812 0.00018285 -0.10019 -5.4181E-05 0.23793 0.00012867 541.2990706122957 92.638 0.87462 88.494 88.106 88.98 -4.1435 31 24 2 0 0 0 0.81042 1 17715 17715 30.225 15.643 1 1797800 26067 7231 17214 17220 25759 25759 0.04379538690886875 LFEIFSKNYRV 11 Unmodified _LFEIFSKNYRV_ 0 0 0 POLR3E|p.L654F|1|0.07|ENSG00000058600|chr16:22332075-22332075|C/T|missense_variant POLR3E|p.L654F|1|0.07|ENSG00000058600|chr16:22332075-22332075|C/T|missense_variant POLR3E|p.L654F|1|0.07|ENSG00000058600|chr16:22332075-22332075|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 708.3873901367188 2 708.387719 1414.76089 NaN NaN NaN NaN NaN NaN NaN 28.367 1 26.411 25.911 26.911 -1.9561 0 0 0 0.23698 1 5072 5072 2.7352 1.5419 1 26068 12814 17215 17221 25760 25760 0.07009592557074029 LFEIHYEEV 9 Unmodified _LFEIHYEEV_ 0 0 0 REV__ZCWPW2|p.K303Sfs*25|1|0.18|ENSG00000206559|chr3:28521112-28521112|A/-|frameshift_variant REV__ZCWPW2|p.K303Sfs*25|1|0.18|ENSG00000206559|chr3:28521112-28521112|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.25439453125 2 589.790047 1177.56554 NaN NaN NaN NaN NaN NaN NaN 15.256 1 14.035 13.535 14.535 -1.2219 0 0 0 0.23508 1 2123 2123 1.8442 0 1 + 26069 19625 17216 17222 25761 25761 -0.016139979677518568 LFEPEDTG 8 Unmodified _LFEPEDTG_ 0 0 0 ENST00000595316.5_1_19:51376719-51380013:+|nuORF;ENST00000599280.5_1_19:51376719-51380061:+|nuORF;ENST00000601114.1_1_19:51379578-51380013:+|nuORF;nc|ENSG00000167751|P20151-3|KLK2;ENST00000597727.5_1_19:51376719-51380306:+|nuORF;ENST00000600755.5_1_19:51376705-51380061:+|nuORF;nc|ENSG00000167751|P20151-2|KLK2;ENSG00000167751|ENST00000325321|KLK2 ENST00000595316.5_1_19:51376719-51380013:+|nuORF ENST00000595316.5_1_19:51376719-51380013:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7633972167969 2 454.205815 906.397078 NaN NaN NaN NaN NaN NaN NaN 63.845 1 60.588 60.088 61.088 -3.2567 0 0 0 0.23664 1 11980 11980 3.2813 0 1 26070 5844 17217 17223 25762 25762 -0.059864798814146525 LFERVAQV 8 Unmodified _LFERVAQV_ 0 0 0 ENST00000496369.1_1_2:62063126-62066596:-|nuORF ENST00000496369.1_1_2:62063126-62066596:-|nuORF ENST00000496369.1_1_2:62063126-62066596:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7782897949219 2 481.276909 960.539266 0.053569 2.5782E-05 0.26918 0.00012955 0.32275 0.00015533 481.27704957077964 115.42 0.6496 110.95 110.6 111.25 -4.4726 34 18 2 0 0 0 8448 1 22815 22815 1.7423 0 1 3868200 26071 10575 17218 17224 25763 25763 0.05741777651417124 LFFETGSR 8 Unmodified _LFFETGSR_ 0 0 0 nc|ENSG00000114529|Q5BVD1-3|TTMP nc|ENSG00000114529|Q5BVD1-3|TTMP nc|ENSG00000114529|Q5BVD1-3|TTMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7356872558594 2 478.745442 955.476331 -0.022564 -1.0803E-05 0.44166 0.00021144 0.41909 0.00020064 478.7456882425647 40.626 1.086 38.087 37.78 38.866 -2.5398 55 30 3 0 0 0 0.64512 1 7316 7316 19.257 2.3147 1 14654000 26072 12290 17219 17225 25764 25764 -0.003187881366102374 LFFFNFLIFW 10 Unmodified _LFFFNFLIFW_ 0 0 0 ENST00000324198.10_1_22:26120814-26120889:+|nuORF ENST00000324198.10_1_22:26120814-26120889:+|nuORF ENST00000324198.10_1_22:26120814-26120889:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2520751953125 3 465.249632 1392.72707 NaN NaN NaN NaN NaN NaN NaN 43.907 1 41.117 40.617 41.617 -2.79 0 0 0 2.8426 1 8237 8237 0.063865 0.057909 1 26073 8728 17220 17226 25765 25765 0.0464121585596331 LFFFNFLIFW 10 Unmodified _LFFFNFLIFW_ 0 0 0 ENST00000324198.10_1_22:26120814-26120889:+|nuORF ENST00000324198.10_1_22:26120814-26120889:+|nuORF ENST00000324198.10_1_22:26120814-26120889:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2415466308594 3 465.249632 1392.72707 NaN NaN NaN NaN NaN NaN NaN 43.935 1 41.145 40.645 41.645 -2.79 0 0 0 2.8426 1 8243 8243 0.063865 0.032455 1 26074 8728 17220 17226 25766 25766 0.0464121585596331 LFFFNFLIFW 10 Unmodified _LFFFNFLIFW_ 0 0 0 ENST00000324198.10_1_22:26120814-26120889:+|nuORF ENST00000324198.10_1_22:26120814-26120889:+|nuORF ENST00000324198.10_1_22:26120814-26120889:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25103759765625 3 465.249632 1392.72707 NaN NaN NaN NaN NaN NaN NaN 112.34 1 107.81 107.31 108.31 -4.5259 0 0 0 2.8426 1 21565 21565 0.26539 0.23398 1 26075 8728 17220 17226 25767 25767 0.0464121585596331 LFFFNFLIFW 10 Unmodified _LFFFNFLIFW_ 0 0 0 ENST00000324198.10_1_22:26120814-26120889:+|nuORF ENST00000324198.10_1_22:26120814-26120889:+|nuORF ENST00000324198.10_1_22:26120814-26120889:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2472839355469 3 465.249632 1392.72707 NaN NaN NaN NaN NaN NaN NaN 116.99 1 112.41 111.91 112.91 -4.5815 0 0 0 2.8426 1 22447 22447 0.043787 0.043223 1 26076 8728 17220 17226 25768 25768 0.0464121585596331 LFFFNFLIFW 10 Unmodified _LFFFNFLIFW_ 0 0 0 ENST00000324198.10_1_22:26120814-26120889:+|nuORF ENST00000324198.10_1_22:26120814-26120889:+|nuORF ENST00000324198.10_1_22:26120814-26120889:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2481994628906 3 465.249632 1392.72707 NaN NaN NaN NaN NaN NaN NaN 96.979 1 93.06 92.56 93.56 -3.9194 0 0 0 2.8426 1 18612 18612 0.51642 0.34442 1 26077 8728 17220 17226 25769 25769 0.0464121585596331 LFFFNMLY 8 Unmodified _LFFFNMLY_ 0 0 0 REV__ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant REV__ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7720336914062 2 547.772614 1093.53067 0.14353 7.8622E-05 -1.0848 -0.00059421 -0.94124 -0.00051559 547.7718600620036 102.72 0.60474 98.536 98.2 98.805 -4.1861 33 16 3 0 0 0 0.69085 1 20240 20240 15.768 0.92995 1 2130800 + 26078 12887 17221 17227 25770 25770 -0.012349123094054448 LFFNVFEK 8 Unmodified _LFFNVFEK_ 0 0 0 REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.26953125 2 522.28166 1042.54877 NaN NaN NaN NaN NaN NaN NaN 154.26 1 149.03 148.53 149.53 -5.2209 0 0 0 0.22699 1 29905 29905 0.68139 0.3018 1 + 26079 20987 17222 17228 25771 25771 0.029195459369248056 LFGQYFKLESF 11 Unmodified _LFGQYFKLESF_ 0 0 0 REV__PRKDC|p.N1957S|1|0.19|ENSG00000253729|chr8:47862422-47862422|T/C|missense_variant REV__PRKDC|p.N1957S|1|0.19|ENSG00000253729|chr8:47862422-47862422|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23968505859375 3 460.239573 1377.69689 NaN NaN NaN NaN NaN NaN NaN 33.45 1 31.132 30.632 31.632 -2.3175 0 0 0 0.22632 1 6117 6117 5.4027 2.3304 1 + 26080 24510 17223 17229 25772 25772 0.023148124001409087 LFGRYEERY 9 Unmodified _LFGRYEERY_ 0 0 0 REV__nc|ENSG00000158786|Q9BZM2|PLA2G2F REV__nc|ENSG00000158786|Q9BZM2|PLA2G2F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.1080322265625 3 411.540134 1231.59857 -0.0054186 -2.23E-06 0.0028332 1.166E-06 -0.0025854 -1.064E-06 411.5401076524177 119.09 0.76693 114.68 114.28 115.05 -4.4088 61 21 4 0 0 0 0.87918 1 22975 22975 2.7352 0 1 7769400 + 26081 17346 17224 17230 25773 25773 -0.00796371125056794 LFGRYRAP 8 Unmodified _LFGRYRAP_ 0 0 0 REV__ENST00000565559.5_2_15:42697105-42701567:+|nuORF REV__ENST00000565559.5_2_15:42697105-42701567:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27667236328125 2 490.277244 978.539935 NaN NaN NaN NaN NaN NaN NaN 115.03 1 115.03 114.53 115.53 0 0 0 0 0.21181 1 22635 22635 15.768 2.2603 1 + 26082 23110 17225 17231 25774 25774 0.049806170911210756 LFGTAAVTSL 10 Unmodified _LFGTAAVTSL_ 0 0 0 REV__SLC10A3|p.L407*|1|0.92|ENSG00000126903|chrX:154487722-154487722|G/-|frameshift_variant REV__SLC10A3|p.L407*|1|0.92|ENSG00000126903|chrX:154487722-154487722|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2755432128906 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 117 1 117 116.5 117.5 0 0 0 0 0.22576 1 23042 23042 14.838 0.93222 1 + 26083 15872 17226 17232 25775 25775 0.04846938211710494 LFGVSHIAEI 10 Unmodified _LFGVSHIAEI_ 0 0 0 REV__ENSG00000146216|ENST00000259750|TTBK1 REV__ENSG00000146216|ENST00000259750|TTBK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79248046875 2 543.303124 1084.5917 0.23878 0.00012973 -0.12834 -6.9725E-05 0.11044 6.0005E-05 543.3030050089402 88.037 0.65109 88.037 87.676 88.327 0 22 18 2 0 0 0 0.21256 1 17175 17175 58.679 1.4297 1 1770800 + 26084 16876 17227 17233 25776 25776 0.05278315994382865 LFGVSHIAEI 10 Unmodified _LFGVSHIAEI_ 0 0 0 REV__ENSG00000146216|ENST00000259750|TTBK1 REV__ENSG00000146216|ENST00000259750|TTBK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7938842773438 2 543.303124 1084.5917 0.18919 0.00010279 -0.61266 -0.00033286 -0.42347 -0.00023007 543.3028018889098 91.717 0.47306 87.792 87.617 88.09 -3.9251 22 13 3 0 0 0 0.23855 1 17965 17965 56.177 0 1 978080 + 26085 16876 17227 17233 25777 25777 0.05278315994382865 LFGVSHIAEI 10 Unmodified _LFGVSHIAEI_ 0 0 0 REV__ENSG00000146216|ENST00000259750|TTBK1 REV__ENSG00000146216|ENST00000259750|TTBK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7924194335938 2 543.303124 1084.5917 0.30745 0.00016704 0.10539 5.7258E-05 0.41284 0.0002243 543.303355603569 91.83 0.59101 87.735 87.563 88.155 -4.0946 18 16 2 0 0 0 0.21256 1 17521 17521 58.679 0 1 1182700 + 26086 16876 17227 17233 25778 25778 0.05278315994382865 LFHFSFLQI 9 Unmodified _LFHFSFLQI_ 0 0 0 REV__ENSG00000198674|ENST00000307002|OR10G6 REV__ENSG00000198674|ENST00000307002|OR10G6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3145141601562 2 576.316035 1150.61752 NaN NaN NaN NaN NaN NaN NaN 79.229 1 75.718 75.218 76.218 -3.5102 0 0 0 0.22962 1 15475 15475 14.838 3.3436 1 + 26087 19432 17228 17234 25779 25779 0.04823210236668274 LFHIYFWPFHY 11 Unmodified _LFHIYFWPFHY_ 0 0 0 REV__ENST00000366663.9_1_1:230974343-230974889:-|nuORF REV__ENST00000366663.9_1_1:230974343-230974889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3892211914062 2 785.387522 1568.76049 NaN NaN NaN NaN NaN NaN NaN 173.74 1 168.95 168.45 169.45 -4.7898 0 0 0 0.23698 1 35461 35461 1.4819 0.15237 1 + 26088 20902 17229 17235 25780 25780 -0.0011378237211374653 LFICMYKY 8 Unmodified _LFICMYKY_ 0 0 0 REV__ENST00000397137.5_2_20:36146318-36146510:-|nuORF REV__ENST00000397137.5_2_20:36146318-36146510:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2684326171875 2 540.766474 1079.5184 0.020978 1.1344E-05 1.0441 0.00056462 1.0651 0.00057596 540.7673435213092 51.503 0.42032 48.452 48.169 48.589 -3.0517 15 11 2 0 0 0 0.69887 1 9501 9501 14.582 2.0501 1 1229200 + 26089 21295 17230 17236 25781 25781 -0.01818272044101832 LFIEEIQA 8 Unmodified _LFIEEIQA_ 0 0 0 nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-5|CUX1 nc|ENSG00000257923|P39880-4|CUX1 nc|ENSG00000257923|P39880-4|CUX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7655334472656 2 481.7633 961.512048 NaN NaN NaN NaN NaN NaN NaN 62.214 1 58.845 58.345 59.345 -3.3694 0 0 0 0.14536 1 11610 11610 38.151 4.0487 1 26090 7948 17231 17237 25782 25782 0.02975249320365947 LFIGVRKPK 9 Unmodified _LFIGVRKPK_ 0 0 0 REV__ENSG00000204599|ENST00000396551|TRIM39 REV__ENSG00000204599|ENST00000396551|TRIM39 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 529.3462524414062 2 529.347669 1056.68079 NaN NaN NaN NaN NaN NaN NaN 167.44 1 162.65 162.15 163.15 -4.7898 0 0 0 0.23508 1 33768 33768 11.64 1.5664 1 + 26091 19551 17232 17238 25783 25783 0.15471195744544275 LFIKDAEA 8 Unmodified _LFIKDAEA_ 0 0 0 REV__tr|U7SUK2|U7SUK2_FUSNUDUF1353domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01199PE=4SV=1 REV__tr|U7SUK2|U7SUK2_FUSNUDUF1353domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01199PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.750244140625 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 99.1 1 95.144 94.644 95.644 -3.9564 0 0 0 0.21171 1 19024 19024 15.847 3.3156 1 + 26092 25170 17233 17239 25784 25784 0.02930980148892104 LFIVHFFY 8 Unmodified _LFIVHFFY_ 0 0 0 TAS2R42|p.S249Yfs*17|1|0.09|ENSG00000186136|chr12:11186189-11186192|AAGG/-|frameshift_variant TAS2R42|p.S249Yfs*17|1|0.09|ENSG00000186136|chr12:11186189-11186192|AAGG/-|frameshift_variant TAS2R42|p.S249Yfs*17|1|0.09|ENSG00000186136|chr12:11186189-11186192|AAGG/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.786376953125 2 543.294571 1084.57459 0.32652 0.0001774 -1.6615 -0.00090269 -1.335 -0.00072529 543.7936465273782 118.32 0.60553 118.32 117.86 118.47 0 28 16 3 0 0 0 0.72231 1 23220 23220 11.114 0.93107 1 2885300 26093 25821 17234 17240 25785 25785 0.03568440179242316 LFIVLLHLVI 10 Unmodified _LFIVLLHLVI_ 0 0 0 nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D;ENST00000512393.1_1_4:47582447-47584942:+|nuORF nc|ENSG00000145246|Q9P241-2|ATP10D nc|ENSG00000145246|Q9P241-2|ATP10D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2659912109375 2 590.396828 1178.7791 NaN NaN NaN NaN NaN NaN NaN 128.95 1 128.95 128.45 129.45 0 0 0 0 2.8426 1 25468 25468 0.0013812 0.0013812 1 26094 4600 17235 17241 25786 25786 0.19686379269751342 LFIVLLLCFY 10 Unmodified _LFIVLLLCFY_ 0 0 0 REV__ENSG00000110900|ENST00000546076|TSPAN11 REV__ENSG00000110900|ENST00000546076|TSPAN11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7814331054688 2 622.361596 1242.70864 NaN NaN NaN NaN NaN NaN NaN 66.375 1 63.048 62.548 63.548 -3.3268 0 0 0 0.22588 1 12495 12495 4.3292 0 1 + 26095 15222 17236 17242 25787 25787 0.09699337889787785 LFIVLLLCFY 10 Unmodified _LFIVLLLCFY_ 0 0 0 REV__ENSG00000110900|ENST00000546076|TSPAN11 REV__ENSG00000110900|ENST00000546076|TSPAN11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7774658203125 2 622.361596 1242.70864 NaN NaN NaN NaN NaN NaN NaN 73.123 1 69.585 69.085 70.085 -3.5385 0 0 0 0.22588 1 13873 13873 4.3292 0 1 + 26096 15222 17236 17242 25788 25788 0.09699337889787785 LFIYDCSAAE 10 Unmodified _LFIYDCSAAE_ 0 0 0 ENST00000463902.5_1_21:44283680-44299641:-|nuORF;ENST00000492742.5_1_21:44283680-44299172:-|nuORF;ENST00000479429.5_1_21:44283680-44299605:-|nuORF;nc|ENSG00000160193|P57081-2|WDR4;ENSG00000160193|ENST00000398208|WDR4 ENST00000463902.5_1_21:44283680-44299641:-|nuORF ENST00000463902.5_1_21:44283680-44299641:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 378.1748046875 3 377.83908 1130.49541 NaN NaN NaN NaN NaN NaN NaN 138.6 1 133.76 133.26 134.26 -4.8492 0 0 0 2.8426 1 26715 26715 0.063865 0 1 26097 5233 17237 17243 25789 25789 -0.06461619627884829 LFKALLIIYG 10 Unmodified _LFKALLIIYG_ 0 0 0 ENSG00000153294|ENST00000283303|ADGRF4 ENSG00000153294|ENST00000283303|ADGRF4 ENSG00000153294|ENST00000283303|ADGRF4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3323364257812 2 575.86536 1149.71617 0.22814 0.00013138 -2.4165 -0.0013916 -2.1884 -0.0012602 575.8649120660453 135.44 0.39258 130.61 130.27 130.66 -4.8307 11 10 2 0 0 0 1.1231 1 26070 26070 1.9275 0 1 1046900 26098 4967 17238 17244 25790 25790 0.1472981348169924 LFKDQKAL 8 Unmodified _LFKDQKAL_ 0 0 0 REV__ENST00000441634.5_1_2:85824029-85824252:+|nuORF REV__ENST00000441634.5_1_2:85824029-85824252:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7854309082031 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 164.72 1 159.67 159.17 160.17 -5.0446 0 0 0 0.19492 1 32143 32143 26.341 0.94196 1 + 26099 21714 17239 17245 25791 25791 0.07734948311224343 LFKHAPLH 8 Unmodified _LFKHAPLH_ 0 0 0 REV__ENSG00000130449|ENST00000252744|ZSWIM6 REV__ENSG00000130449|ENST00000252744|ZSWIM6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78369140625 2 481.782162 961.549771 NaN NaN NaN NaN NaN NaN NaN 120.76 1 120.76 120.26 121.26 0 0 0 0 0.23366 1 23800 23800 0.62683 0.37535 1 + 26100 16005 17240 17246 25792 25792 0.06745805096500135 LFKIEDVSI 9 Unmodified _LFKIEDVSI_ 0 0 0 REV__tr|U7T3B2|U7T3B2_FUSNUCob(I)yrinicacida,c-diamideadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00336PE=4SV=1 REV__tr|U7T3B2|U7T3B2_FUSNUCob(I)yrinicacida,c-diamideadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00336PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.26611328125 2 532.305332 1062.59611 0.33832 0.00018009 -0.35732 -0.0001902 -0.019005 -1.0116E-05 532.3051076898136 120.06 1.1119 115.54 114.91 116.02 -4.5221 86 31 4 0 0 0 0.66537 1 23589 23589 8.5933 0 1 19651000 + 26101 25349 17241 17247 25793 25793 0.0673178041729443 LFKLGILKL 9 Unmodified _LFKLGILKL_ 0 0 0 REV__ENST00000261349.8_1_12:12397271-12397439:-|nuORF REV__ENST00000261349.8_1_12:12397271-12397439:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2703247070312 2 522.862621 1043.71069 0.37126 0.00019412 2.7159 0.00142 3.0871 0.0016141 523.3656482391535 146.49 0.31326 141.49 141.36 141.67 -5 11 8 2 0 0 0 0.61568 1 28351 28351 0.029283 0 1 5716900 + 26102 20172 17242 17248 25794 25794 0.19058134689885264 LFKLILLEKK 10 Unmodified _LFKLILLEKK_ 0 0 0 nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7680053710938 2 622.920667 1243.82678 NaN NaN NaN NaN NaN NaN NaN 71.372 1 67.905 67.405 68.405 -3.467 0 0 0 0.22588 1 13526 13526 0.45834 0 1 26103 2342 17243 17249 25795 25795 0.21462033469947528 LFKLVTPR 8 Unmodified _LFKLVTPR_ 0 0 0 REV__ENSG00000181004|ENST00000314218|BBS12 REV__ENSG00000181004|ENST00000314218|BBS12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 325.2129821777344 3 325.211289 972.612037 NaN NaN NaN NaN NaN NaN NaN 81.559 1 77.72 77.22 78.22 -3.8392 0 0 0 0.23782 1 15487 15487 0.12286 0 1 + 26104 18711 17244 17250 25796 25796 0.12463531444848286 LFKTRFRL 8 Unmodified _LFKTRFRL_ 0 0 0 CLCN2|p.P381Lfs*35|1|0.16|ENSG00000114859|chr3:184355722-184355722|G/-|frameshift_variant;ENST00000485667.1_1_3:184073137-184079267:-|nuORF;CLCN2|p.P667Lfs*11|2|0.15|ENSG00000114859|chr3:184353278-184353278|G/-|frameshift_variant;CLCN2|p.E690Rfs*6|1|0.17|ENSG00000114859|chr3:184353108-184353108|C/-|frameshift_variant;nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2 CLCN2|p.P381Lfs*35|1|0.16|ENSG00000114859|chr3:184355722-184355722|G/-|frameshift_variant CLCN2|p.P381Lfs*35|1|0.16|ENSG00000114859|chr3:184355722-184355722|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.280517578125 2 540.837468 1079.66038 0.15287 8.268E-05 -2.3592 -0.0012759 -2.2063 -0.0011933 540.8373640062032 138.55 0.17126 133.6 133.5 133.67 -4.952 6 4 2 0 0 0 1.0095 1 26651 26651 10.183 0.10947 1 805230 26105 568 17245 17251 25797 25797 0.12374025084727691 LFLAHVAC 8 Unmodified _LFLAHVAC_ 0 0 0 REV__PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant REV__PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2356872558594 2 437.236199 872.457844 NaN NaN NaN NaN NaN NaN NaN 65.081 1 61.797 61.297 62.297 -3.2832 0 0 0 0.21486 1 12226 12226 6.3541 0 1 + 26106 15211 17246 17252 25798 25798 0.01651378687813576 LFLAMTETLI 10 Unmodified _LFLAMTETLI_ 0 0 0 REV__tr|U7SSM7|U7SSM7_FUSNURibosomalprocessingcysteineproteasePrpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01505PE=3SV=1 REV__tr|U7SSM7|U7SSM7_FUSNURibosomalprocessingcysteineproteasePrpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01505PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.322998046875 2 576.322668 1150.63078 NaN NaN NaN NaN NaN NaN NaN 126.4 1 121.7 121.2 122.2 -4.6998 0 0 0 2.8426 1 24315 24315 5.8681 0 1 + 26107 25061 17247 17253 25799 25799 0.061492802337397734 LFLARKHLK 9 Unmodified _LFLARKHLK_ 0 0 0 nc|ENSG00000183260|Q9H3Z7|ABHD16B nc|ENSG00000183260|Q9H3Z7|ABHD16B nc|ENSG00000183260|Q9H3Z7|ABHD16B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.0983581542969 3 375.913354 1124.71823 NaN NaN NaN NaN NaN NaN NaN 9.5706 1 8.5061 8.0061 9.0061 -1.0645 0 0 0 0.23508 1 1030 1030 0.26902 0 1 26108 12504 17248 17254 25800 25800 0.16086287010170963 LFLCFPYLLWL 11 Unmodified _LFLCFPYLLWL_ 0 0 0 ENST00000322054.9_1_2:31489890-31490169:+|nuORF ENST00000322054.9_1_2:31489890-31490169:+|nuORF ENST00000322054.9_1_2:31489890-31490169:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 476.59759521484375 3 476.598044 1426.7723 NaN NaN NaN NaN NaN NaN NaN 173.75 1 168.96 168.46 169.46 -4.7898 0 0 0 0.22632 1 35463 35463 0.58532 0.31993 1 26109 8721 17249 17255 25801 25801 0.07598698326864906 LFLFDRGI 8 Unmodified _LFLFDRGI_ 0 0 0 REV__ENST00000290573.6_1_2:75118054-75118234:+|nuORF REV__ENST00000290573.6_1_2:75118054-75118234:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2698669433594 2 490.781828 979.549102 0.10055 4.9349E-05 1.1428 0.00056086 1.2433 0.00061021 490.78176367686086 148.39 0.17593 143.34 143.22 143.4 -5.0595 6 4 2 0 0 0 0.8689 1 28723 28723 0.68139 0.42991 1 1017400 + 26110 20351 17250 17256 25802 25802 0.05850965656816243 LFLFQTPN 8 Unmodified _LFLFQTPN_ 0 0 0 ENST00000460683.1_2_3:122439891-122439990:+|nuORF ENST00000460683.1_2_3:122439891-122439990:+|nuORF ENST00000460683.1_2_3:122439891-122439990:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2662048339844 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 54.94 1 54.94 54.44 55.44 0 0 0 0 0.23025 1 10478 10478 0.25148 0.12366 1 26111 10057 17251 17257 25803 25803 0.027349729028514957 LFLFQTPN 8 Unmodified _LFLFQTPN_ 0 0 0 ENST00000460683.1_2_3:122439891-122439990:+|nuORF ENST00000460683.1_2_3:122439891-122439990:+|nuORF ENST00000460683.1_2_3:122439891-122439990:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26702880859375 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 57.778 1 54.572 54.072 55.072 -3.2052 0 0 0 0.22692 1 10769 10769 0.68139 0.3018 1 26112 10057 17251 17257 25804 25804 0.027349729028514957 LFLIIYLVT 9 Unmodified _LFLIIYLVT_ 0 0 0 OR8K1|p.N178Ffs*4|1|0.24|ENSG00000150261|chr11:56346569-56346582|AAACATAATCAGCT/-|frameshift_variant;ENSG00000150261|ENST00000279783|OR8K1;ENSG00000171481|ENST00000304820|OR1L3 OR8K1|p.N178Ffs*4|1|0.24|ENSG00000150261|chr11:56346569-56346582|AAACATAATCAGCT/-|frameshift_variant OR8K1|p.N178Ffs*4|1|0.24|ENSG00000150261|chr11:56346569-56346582|AAACATAATCAGCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.78271484375 2 547.846636 1093.67872 NaN NaN NaN NaN NaN NaN NaN 140.67 1 140.67 140.17 141.17 0 0 0 0 0.19656 1 28012 28012 0.40827 0 1 26113 4822 17252 17258 25805 25805 0.13562722216079237 LFLKLKRSRL 10 Unmodified _LFLKLKRSRL_ 0 0 0 REV__ENSG00000196305|ENST00000443024|IARS1 REV__ENSG00000196305|ENST00000443024|IARS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24139404296875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 143.62 1 143.62 143.12 144.12 0 0 0 0 2.8426 1 28665 28665 0.043787 0 1 + 26114 19232 17253 17259 25806 25806 0.21390489652844735 LFLKLKRSRL 10 Unmodified _LFLKLKRSRL_ 0 0 0 REV__ENSG00000196305|ENST00000443024|IARS1 REV__ENSG00000196305|ENST00000443024|IARS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2535095214844 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 153.13 1 153.13 152.63 153.63 0 0 0 0 0.22588 1 30678 30678 2.086 0.17963 1 + 26115 19232 17253 17259 25807 25807 0.21390489652844735 LFLKLKRSRL 10 Unmodified _LFLKLKRSRL_ 0 0 0 REV__ENSG00000196305|ENST00000443024|IARS1 REV__ENSG00000196305|ENST00000443024|IARS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2358093261719 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 153.17 1 153.17 152.67 153.67 0 0 0 0 0.22588 1 30687 30687 2.086 0.17963 1 + 26116 19232 17253 17259 25808 25808 0.21390489652844735 LFLKLKRSRL 10 Unmodified _LFLKLKRSRL_ 0 0 0 REV__ENSG00000196305|ENST00000443024|IARS1 REV__ENSG00000196305|ENST00000443024|IARS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2544250488281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 53.732 1 50.848 50.348 51.348 -2.8837 0 0 0 0.22588 1 10238 10238 0.77653 0 1 + 26117 19232 17253 17259 25809 25809 0.21390489652844735 LFLKLKRSRL 10 Unmodified _LFLKLKRSRL_ 0 0 0 REV__ENSG00000196305|ENST00000443024|IARS1 REV__ENSG00000196305|ENST00000443024|IARS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2425842285156 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 148.63 1 143.57 143.07 144.07 -5.0595 0 0 0 2.8426 1 28790 28790 0.0013812 0 1 + 26118 19232 17253 17259 25810 25810 0.21390489652844735 LFLKNINV 8 Unmodified _LFLKNINV_ 0 0 0 nc|ENSG00000063176|Q9NRA0-3|SPHK2 nc|ENSG00000063176|Q9NRA0-3|SPHK2 nc|ENSG00000063176|Q9NRA0-3|SPHK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7709655761719 2 480.797478 959.580402 -0.0086623 -4.1648E-06 0.17862 8.5882E-05 0.16996 8.1718E-05 480.79748574043407 152.13 0.82932 152.13 151.73 152.56 0 60 22 3 0 0 0 0.18731 1 30448 30448 46.921 3.0626 1 17286000 26119 12223 17254 17260 25811 25811 0.09899538690888221 LFLKNINV 8 Unmodified _LFLKNINV_ 0 0 0 nc|ENSG00000063176|Q9NRA0-3|SPHK2 nc|ENSG00000063176|Q9NRA0-3|SPHK2 nc|ENSG00000063176|Q9NRA0-3|SPHK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7774353027344 2 480.797478 959.580402 0.35981 0.000173 -0.079307 -3.813E-05 0.28051 0.00013487 480.79735532804057 157.14 0.91541 151.87 151.37 152.29 -5.2712 66 25 3 0 0 0 0.18731 1 30451 30451 46.921 0 1 13607000 26120 12223 17254 17260 25812 25812 0.09899538690888221 LFLKQTDP 8 Unmodified _LFLKQTDP_ 0 0 0 nc|ENSG00000047634|Q9UN30-1|SCML1;nc|ENSG00000047634|Q9UN30-2|SCML1;ENSG00000047634|ENST00000380041|SCML1 nc|ENSG00000047634|Q9UN30-1|SCML1 nc|ENSG00000047634|Q9UN30-1|SCML1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78887939453125 2 481.271293 960.528032 0.033298 1.6025E-05 0.51755 0.00024908 0.55085 0.00026511 481.2716027328663 47.635 0.38426 44.693 44.478 44.862 -2.9421 17 10 2 0 0 0 0.70613 1 8709 8709 13.508 2.684 1 879620 26121 1220 17255 17261 25813 25813 0.04618955557270965 LFLLFLRAWSL 11 Unmodified _LFLLFLRAWSL_ 0 0 0 REV__ENST00000523439.1_1_19:57999318-58003198:+|nuORF REV__ENST00000523439.1_1_19:57999318-58003198:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23260498046875 3 460.279703 1377.81728 NaN NaN NaN NaN NaN NaN NaN 106.31 1 102.22 101.72 102.72 -4.0913 0 0 0 0.22632 1 20443 20443 1.4551 1.4537 1 + 26122 22665 17256 17262 25814 25814 0.14348265184412412 LFLLRLSV 8 Unmodified _LFLLRLSV_ 0 0 0 REV__ENST00000479431.1_1_11:131781360-132016587:+|nuORF REV__ENST00000479431.1_1_11:131781360-132016587:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23828125 2 480.81567 959.616788 NaN NaN NaN NaN NaN NaN NaN 141.29 1 136.42 135.92 136.92 -4.8678 0 0 0 0.2396 1 27264 27264 0.0082765 0 1 + 26123 22153 17257 17263 25815 25815 0.1353641558760046 LFLLTIAK 8 Unmodified _LFLLTIAK_ 0 0 0 REV__CON__Q29RQ1 REV__CON__Q29RQ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23626708984375 2 459.804771 917.59499 -0.068055 -3.1292E-05 0.53737 0.00024708 0.46931 0.00021579 459.8049307120634 64.966 0.54977 61.919 61.589 62.139 -3.047 26 15 2 0 0 0 0.89147 1 12546 12546 0.62683 0 1 4848800 + + 26124 13536 17258 17264 25816 25816 0.13289610839024135 LFLLTIAK 8 Unmodified _LFLLTIAK_ 0 0 0 REV__CON__Q29RQ1 REV__CON__Q29RQ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2354431152344 2 459.804771 917.59499 0.29939 0.00013766 0.43411 0.0001996 0.7335 0.00033727 459.80485256364346 65.138 0.60928 61.855 61.521 62.13 -3.2832 29 17 3 0 0 0 0.89147 1 12220 12220 0.62683 0 1 3067100 + + 26125 13536 17258 17264 25817 25817 0.13289610839024135 LFLMVMYFFFR 11 Unmodified _LFLMVMYFFFR_ 0 0 0 ENSG00000165661|ENST00000358701|QSOX2 ENSG00000165661|ENST00000358701|QSOX2 ENSG00000165661|ENST00000358701|QSOX2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 505.2610778808594 3 505.262667 1512.76617 NaN NaN NaN NaN NaN NaN NaN 48.116 1 45.166 44.666 45.666 -2.9499 0 0 0 0.22632 1 8803 8803 0.172 0 1 26126 5649 17259 17265 25818 25818 0.030298568236730716 LFLNNNLLRS 10 Unmodified _LFLNNNLLRS_ 0 0 0 nc|ENSG00000185985|Q9H156-2|SLITRK2;ENSG00000185985|ENST00000335565|SLITRK2 nc|ENSG00000185985|Q9H156-2|SLITRK2 nc|ENSG00000185985|Q9H156-2|SLITRK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2968139648438 2 602.345855 1202.67716 NaN NaN NaN NaN NaN NaN NaN 177.52 1 172.73 172.23 173.23 -4.7898 0 0 0 0.22588 1 36309 36309 6.2058 0.47393 1 26127 7025 17260 17266 25819 25819 0.08392481180044342 LFLNRIRY 8 Unmodified _LFLNRIRY_ 0 0 0 REV__ENST00000472189.1_1_17:15960700-15961247:-|nuORF REV__ENST00000472189.1_1_17:15960700-15961247:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.789306640625 2 547.827101 1093.63965 0.20993 0.00011501 -0.15942 -8.7336E-05 0.050513 2.7673E-05 548.3286016445323 101.16 0.45847 97.003 96.666 97.125 -4.1594 19 12 2 0 0 0 0.83439 1 19908 19908 28.173 0 1 771400 + 26128 22051 17261 17267 25820 25820 0.09657434705081869 LFLNVNYP 8 Unmodified _LFLNVNYP_ 0 0 0 ENST00000486274.5_1_3:100013980-100014049:+|nuORF ENST00000486274.5_1_3:100013980-100014049:+|nuORF ENST00000486274.5_1_3:100013980-100014049:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2652282714844 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 76.987 1 73.22 72.72 73.72 -3.7664 0 0 0 0.22834 1 14583 14583 0.25148 0 1 26129 10453 17262 17268 25821 25821 0.027349729028514957 LFLRLLQLA 9 Unmodified _LFLRLLQLA_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7822265625 2 543.855327 1085.6961 NaN NaN NaN NaN NaN NaN NaN 119.76 1 119.76 119.26 120.26 0 0 0 0 0.19634 1 23601 23601 0.0033805 0 1 26130 6634 17263 17269 25822 25822 0.15668062541772088 LFLRWMKKLF 10 Unmodified _LFLRWMKKLF_ 0 0 0 REV__RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant REV__RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5381774902344 3 461.277416 1380.81042 NaN NaN NaN NaN NaN NaN NaN 89.502 1 85.642 85.142 86.142 -3.8595 0 0 0 2.8426 1 17514 17514 0.013265 0 1 + 26131 24555 17264 17270 25823 25823 0.13524629032167468 LFLRYISDWDL 11 Unmodified _LFLRYISDWDL_ 0 0 0 nc|ENSG00000111732|Q9GZX7-2|AICDA;ENST00000545576.1_1_12:8757676-8765375:-|nuORF;ENSG00000111732|ENST00000229335|AICDA nc|ENSG00000111732|Q9GZX7-2|AICDA nc|ENSG00000111732|Q9GZX7-2|AICDA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2535705566406 3 480.922244 1439.7449 NaN NaN NaN NaN NaN NaN NaN 58.186 1 54.934 54.434 55.434 -3.2517 0 0 0 0.23698 1 10809 10809 2.6312 0.88896 1 26132 2644 17265 17271 25824 25824 0.04261886320182384 LFLVKAKIY 9 Unmodified _LFLVKAKIY_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.12|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7808227539062 2 547.852253 1093.68995 NaN NaN NaN NaN NaN NaN NaN 152.51 1 147.75 147.25 148.25 -4.7523 0 0 0 0.19634 1 30306 30306 0.073264 0 1 26133 5512 17266 17272 25825 25825 0.14685544310236764 LFLWKISRPL 10 Unmodified _LFLWKISRPL_ 0 0 0 REV__ENST00000486500.1_1_19:47113761-47113809:+|nuORF REV__ENST00000486500.1_1_19:47113761-47113809:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.5990905761719 3 424.932414 1271.77541 0.16214 6.8897E-05 -0.16852 -7.1612E-05 -0.0063882 -2.7146E-06 424.9325052375955 171.15 0.27744 166.23 166.03 166.31 -4.9149 14 7 3 0 0 0 0.36162 1 33877 33877 16.275 1.8692 1 13931000 + 26134 22240 17267 17273 25826 25826 0.150397094958862 LFLWKISRPL 10 Unmodified _LFLWKISRPL_ 0 0 0 REV__ENST00000486500.1_1_19:47113761-47113809:+|nuORF REV__ENST00000486500.1_1_19:47113761-47113809:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 424.932414 1271.77541 0.0988 4.1983E-05 -0.43064 -0.00018299 -0.33184 -0.00014101 424.9323290020501 170.88 0.21152 166.09 166 166.21 -4.7898 -0.042869 -0.00015914 NaN 16.275 9 5 3 NaN NaN NaN NaN 0 NaN NaN 0 12875000 + 26135 22240 17267 17273 0.150397094958862 LFLWKISRPL 10 Unmodified _LFLWKISRPL_ 0 0 0 REV__ENST00000486500.1_1_19:47113761-47113809:+|nuORF REV__ENST00000486500.1_1_19:47113761-47113809:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 424.932414 1271.77541 0.16214 6.8897E-05 -0.16852 -7.1612E-05 -0.0063882 -2.7146E-06 424.9325052375955 171.15 0.27744 166.23 166.03 166.31 -4.9149 0.10318 0.00017501 NaN 16.275 14 7 3 NaN NaN NaN NaN 0 NaN NaN 0 13931000 + 26136 22240 17267 17273 0.150397094958862 LFLWKISRPL 10 Unmodified _LFLWKISRPL_ 0 0 0 REV__ENST00000486500.1_1_19:47113761-47113809:+|nuORF REV__ENST00000486500.1_1_19:47113761-47113809:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 424.932414 1271.77541 0.24371 0.00010356 -0.35771 -0.000152 -0.114 -4.8443E-05 424.93220490176753 170.94 0.27798 166.07 165.91 166.19 -4.873 -0.060311 -6.616E-05 NaN 16.275 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 15715000 + 26137 22240 17267 17273 0.150397094958862 LFLWMVTR 8 Unmodified _LFLWMVTR_ 0 0 0 ENSG00000109063|ENST00000583535|MYH3 ENSG00000109063|ENST00000583535|MYH3 ENSG00000109063|ENST00000583535|MYH3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2725219726562 2 533.29933 1064.58411 NaN NaN NaN NaN NaN NaN NaN 152.68 1 147.93 147.43 148.43 -4.7523 0 0 0 0.22647 1 30337 30337 1.7423 0 1 26138 2513 17268 17274 25827 25827 0.05439885193095506 LFLWMVTR 8 Unmodified _LFLWMVTR_ 0 0 0 ENSG00000109063|ENST00000583535|MYH3 ENSG00000109063|ENST00000583535|MYH3 ENSG00000109063|ENST00000583535|MYH3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2802124023438 2 533.29933 1064.58411 NaN NaN NaN NaN NaN NaN NaN 152.69 1 147.94 147.44 148.44 -4.7525 0 0 0 0.22647 1 30339 30339 0.68139 0.3018 1 26139 2513 17268 17274 25828 25828 0.05439885193095506 LFLYYCIVIY 10 Unmodified _LFLYYCIVIY_ 0 0 0 REV__tr|U7T535|U7T535_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00420PE=4SV=1 REV__tr|U7T535|U7T535_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00420PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2354431152344 3 437.234883 1308.68282 NaN NaN NaN NaN NaN NaN NaN 61.837 1 61.837 61.337 62.337 0 0 0 0 0.22588 1 11859 11859 7.1017 0 1 + 26140 25404 17269 17275 25829 25829 0.04082443647484979 LFMYFQRLLY 10 Unmodified _LFMYFQRLLY_ 0 0 0 CLN6|p.S194Qfs*8|1|0.27|ENSG00000128973|chr15:68209723-68209724|-/A|frameshift_variant CLN6|p.S194Qfs*8|1|0.27|ENSG00000128973|chr15:68209723-68209724|-/A|frameshift_variant CLN6|p.S194Qfs*8|1|0.27|ENSG00000128973|chr15:68209723-68209724|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2495422363281 3 465.249415 1392.72641 NaN NaN NaN NaN NaN NaN NaN 57.892 1 54.981 54.481 55.481 -2.9105 0 0 0 2.8426 1 11112 11112 0.063865 0 1 26141 582 17270 17276 25830 25830 0.04576053144637626 LFNKVFRCP 9 Unmodified _LFNKVFRCP_ 0 0 0 nc|ENSG00000121270|Q96J66-2|ABCC11;ENSG00000121270|ENST00000356608|ABCC11 nc|ENSG00000121270|Q96J66-2|ABCC11 nc|ENSG00000121270|Q96J66-2|ABCC11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2089538574219 3 375.20755 1122.60082 NaN NaN NaN NaN NaN NaN NaN 155.76 1 155.76 155.26 156.26 0 0 0 0 0.19651 1 31230 31230 0.40827 0 1 26142 3173 17271 17277 25831 25831 0.04442386079062999 LFNKVFRCP 9 Unmodified _LFNKVFRCP_ 0 0 0 nc|ENSG00000121270|Q96J66-2|ABCC11;ENSG00000121270|ENST00000356608|ABCC11 nc|ENSG00000121270|Q96J66-2|ABCC11 nc|ENSG00000121270|Q96J66-2|ABCC11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2088317871094 3 375.20755 1122.60082 NaN NaN NaN NaN NaN NaN NaN 155.75 1 150.98 150.48 151.48 -4.7791 0 0 0 0.19657 1 30963 30963 0.073264 0 1 26143 3173 17271 17277 25832 25832 0.04442386079062999 LFNNDCNNSY 10 Unmodified _LFNNDCNNSY_ 0 0 0 ENST00000379205.4_1_4:159590645-159590768:-|nuORF ENST00000379205.4_1_4:159590645-159590768:-|nuORF ENST00000379205.4_1_4:159590645-159590768:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2998657226562 2 602.240395 1202.46624 NaN NaN NaN NaN NaN NaN NaN 123.42 1 118.69 118.19 119.19 -4.731 0 0 0 0.22588 1 23709 23709 6.7232 1.4263 1 26144 9291 17272 17278 25833 25833 -0.12689763924163344 LFNNLTASY 9 Unmodified _LFNNLTASY_ 0 0 0 REV__ENSG00000168758|ENST00000305476|SEMA4C REV__ENSG00000168758|ENST00000305476|SEMA4C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.264892578125 2 521.763832 1041.51311 -0.35212 -0.00018372 0.91525 0.00047755 0.56314 0.00029382 521.7642402678265 113.62 0.48281 109.17 109.01 109.49 -4.4538 20 13 2 0 0 0 0.46541 1 22423 22423 21.747 3.6117 1 1968900 + 26145 18051 17273 17279 25834 25834 -0.00598536310712916 LFNPEVAKY 9 Unmodified _LFNPEVAKY_ 0 0 0 ENSG00000164675|ENST00000324698|IQUB;nc|ENSG00000164675|Q8NA54-2|IQUB ENSG00000164675|ENST00000324698|IQUB ENSG00000164675|ENST00000324698|IQUB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2811889648438 2 540.78985 1079.56515 0.24743 0.00013381 0.45701 0.00024715 0.70445 0.00038096 541.2915433811755 129.45 0.67325 124.71 124.33 125 -4.7408 26 18 2 0 0 0 0.57447 1 24905 24905 14.838 14.838 1 1622900 26146 5561 17274 17280 25835 25835 0.028546271030336356 LFPAEFDEEY 10 Unmodified _LFPAEFDEEY_ 0 0 0 REV__nc|ENSG00000036257|Q13618-3|CUL3 REV__nc|ENSG00000036257|Q13618-3|CUL3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7658081054688 2 630.276969 1258.53938 NaN NaN NaN NaN NaN NaN NaN 54.286 1 54.286 53.786 54.786 0 0 0 0 0.22588 1 10350 10350 3.9444 0 1 + 26147 14031 17275 17281 25836 25836 -0.07954311929893265 LFPFQTRR 8 Unmodified _LFPFQTRR_ 0 0 0 REV__ENST00000331925.6_1_17:79477188-79477296:-|nuORF REV__ENST00000331925.6_1_17:79477188-79477296:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2758178710938 2 532.803626 1063.5927 -0.22134 -0.00011793 1.7373 0.00092564 1.516 0.00080771 533.3058583750283 62.449 0.54971 62.449 62.073 62.622 0 20 15 2 0 0 0 8448 1 12026 12026 0.68139 0.054566 1 3131900 + 26148 20620 17276 17282 25837 25837 0.06344575153934784 LFPPTPISLP 10 Unmodified _LFPPTPISLP_ 0 0 0 ENST00000545521.5_1_16:29821598-29821694:+|nuORF ENST00000545521.5_1_16:29821598-29821694:+|nuORF ENST00000545521.5_1_16:29821598-29821694:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.277099609375 2 541.318243 1080.62193 NaN NaN NaN NaN NaN NaN NaN 163.06 1 158.27 157.77 158.77 -4.7898 0 0 0 0.22544 1 32477 32477 19.257 4.4187 1 26149 11121 17277 17283 25838 25838 0.0848467465957583 LFPRISST 8 Unmodified _LFPRISST_ 0 0 0 ENST00000531140.1_1_11:121174081-121177378:+|nuORF ENST00000531140.1_1_11:121174081-121177378:+|nuORF ENST00000531140.1_1_11:121174081-121177378:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2306213378906 2 460.763635 919.512717 0.48452 0.00022325 -0.6967 -0.00032101 -0.21218 -9.7764E-05 460.76325058891797 76.893 0.49594 76.893 76.621 77.117 0 19 13 2 0 0 0 0.78482 1 14952 14952 32.305 6.9062 1 1175000 26150 10965 17278 17284 25839 25839 0.04974088760093309 LFQEASGLP 9 Unmodified _LFQEASGLP_ 0 0 0 REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3 REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2539978027344 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 35.717 1 35.717 35.217 36.217 0 0 0 0 0.20155 1 6564 6564 23.148 0 1 + 26151 16227 17279 17285 25840 25840 0.00982078660570096 LFQEASGLP 9 Unmodified _LFQEASGLP_ 0 0 0 REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3 REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2549743652344 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 38.149 1 35.707 35.207 36.207 -2.4419 0 0 0 0.20155 1 6779 6779 23.148 0 1 + 26152 16227 17279 17285 25841 25841 0.00982078660570096 LFQEREHVLRL 11 Unmodified _LFQEREHVLRL_ 0 0 0 ENST00000540344.5_1_12:498593-542579:+|nuORF;nc|ENSG00000120647|Q9BR77-2|CCDC77;ENSG00000120647|ENST00000239830|CCDC77;ENST00000538160.1_1_12:514707-527878:+|nuORF ENST00000540344.5_1_12:498593-542579:+|nuORF ENST00000540344.5_1_12:498593-542579:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2540588378906 3 480.60877 1438.80448 0.14922 7.1714E-05 -0.28934 -0.00013906 -0.14012 -6.7345E-05 480.6086176164883 98.672 0.69119 98.672 98.333 99.024 0 39 19 3 0 0 0 0.80759 1 19286 19286 2.6312 1.3016 1 3334200 26153 3142 17280 17286 25842 25842 0.10263202054215981 LFQEREHVLRL 11 Unmodified _LFQEREHVLRL_ 0 0 0 ENST00000540344.5_1_12:498593-542579:+|nuORF;nc|ENSG00000120647|Q9BR77-2|CCDC77;ENSG00000120647|ENST00000239830|CCDC77;ENST00000538160.1_1_12:514707-527878:+|nuORF ENST00000540344.5_1_12:498593-542579:+|nuORF ENST00000540344.5_1_12:498593-542579:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2538146972656 3 480.60877 1438.80448 0.019769 9.501E-06 -0.03389 -1.6288E-05 -0.014122 -6.7871E-06 480.608753113027 102.28 0.69425 98.093 97.751 98.445 -4.1861 44 19 3 0 0 0 0.79428 2 20058 20058;20066 4.4062 1.5629 1 3909500 26154 3142 17280 17286 25843;25844 25843 0.10263202054215981 LFQEREHVLRL 11 Unmodified _LFQEREHVLRL_ 0 0 0 ENST00000540344.5_1_12:498593-542579:+|nuORF;nc|ENSG00000120647|Q9BR77-2|CCDC77;ENSG00000120647|ENST00000239830|CCDC77;ENST00000538160.1_1_12:514707-527878:+|nuORF ENST00000540344.5_1_12:498593-542579:+|nuORF ENST00000540344.5_1_12:498593-542579:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25439453125 3 480.60877 1438.80448 0.43995 0.00021145 -0.40968 -0.0001969 0.030273 1.455E-05 480.6085219445512 102.1 0.75383 98.077 97.734 98.488 -4.0212 51 21 4 0 0 0 0.62064 1 19619 19619 17.049 10.011 1 3118300 26155 3142 17280 17286 25845 25845 0.10263202054215981 LFQEREHVLRL 11 Unmodified _LFQEREHVLRL_ 0 0 0 ENST00000540344.5_1_12:498593-542579:+|nuORF;nc|ENSG00000120647|Q9BR77-2|CCDC77;ENSG00000120647|ENST00000239830|CCDC77;ENST00000538160.1_1_12:514707-527878:+|nuORF ENST00000540344.5_1_12:498593-542579:+|nuORF ENST00000540344.5_1_12:498593-542579:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 480.60877 1438.80448 0.32849 0.00015788 -0.22632 -0.00010877 0.10217 4.9104E-05 480.608654676019 102.31 0.75354 97.993 97.606 98.36 -4.3208 -0.061678 -2.2539E-05 NaN 17.049 47 21 3 NaN NaN NaN NaN 0 NaN NaN 0 2729700 26156 3142 17280 17286 0.10263202054215981 LFQGSRDP 8 Unmodified _LFQGSRDP_ 0 0 0 ENSG00000135631|ENST00000486777|RAB11FIP5 ENSG00000135631|ENST00000486777|RAB11FIP5 ENSG00000135631|ENST00000486777|RAB11FIP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.53936767578125 2 460.235242 918.45593 -0.0059304 -2.7294E-06 0.13075 6.0175E-05 0.12482 5.7445E-05 460.2353335634574 38.797 0.66733 36.355 36.054 36.721 -2.4419 42 18 3 0 0 0 0.70613 1 6890 6890 13.508 0 1 2217700 26157 3941 17281 17287 25846 25846 -0.006559587964375169 LFQIKLKIKVD 11 Unmodified _LFQIKLKIKVD_ 0 0 0 REV__AADAC|p.S216F|1|0.09|ENSG00000114771|chr3:151827619-151827619|C/T|missense_variant REV__AADAC|p.S216F|1|0.09|ENSG00000114771|chr3:151827619-151827619|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.8951721191406 4 336.970791 1343.85406 -0.67043 -0.00022591 -0.8822 -0.00029728 -1.5526 -0.00052319 336.9696791255301 10.614 1.209 9.5203 9.0029 10.212 -1.0936 48 33 2 0 0 0 0.82733 1 1200 1200 0 0 1 174430 + 26158 12876 17282 17288 25847 25847 0.19588517010265605 LFQIKLKIKVD 11 Unmodified _LFQIKLKIKVD_ 0 0 0 REV__AADAC|p.S216F|1|0.09|ENSG00000114771|chr3:151827619-151827619|C/T|missense_variant REV__AADAC|p.S216F|1|0.09|ENSG00000114771|chr3:151827619-151827619|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.05694580078125 4 336.970791 1343.85406 -0.67043 -0.00022591 -0.8822 -0.00029728 -1.5526 -0.00052319 336.9696791255301 10.614 1.209 9.5203 9.0029 10.212 -1.0936 48 33 2 0 0 0 0.96228 1 1334 1334 0 0 1 174430 + 26159 12876 17282 17288 25848 25848 0.19588517010265605 LFQKASVY 8 Unmodified _LFQKASVY_ 0 0 0 REV__ENST00000409185.5_1_2:131809023-131809278:-|nuORF REV__ENST00000409185.5_1_2:131809023-131809278:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73284912109375 2 478.26601 954.517468 NaN NaN NaN NaN NaN NaN NaN 66.349 1 63.022 62.522 63.522 -3.3268 0 0 0 0.21486 1 12488 12488 11.114 0.29054 1 + 26160 21405 17283 17289 25849 25849 0.03838972902849491 LFQQNTKSL 9 Unmodified _LFQQNTKSL_ 0 0 0 REV__ENST00000502495.1_1_4:129873642-129918394:-|nuORF REV__ENST00000502495.1_1_4:129873642-129918394:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2020263671875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 123.86 1 119.27 118.77 119.77 -4.5926 0 0 0 0.23508 1 23837 23837 7.609 0.97858 1 + 26161 22438 17284 17290 25850 25850 0.046171279889904326 LFQRFFYTKSF 11 Unmodified _LFQRFFYTKSF_ 0 0 0 nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2 nc|ENSG00000221978|Q96S94-5|CCNL2 nc|ENSG00000221978|Q96S94-5|CCNL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3895874023438 2 742.390262 1482.76597 NaN NaN NaN NaN NaN NaN NaN 127.6 0.99999 122.9 122.4 123.4 -4.6998 0 0 0 0.23698 1 24546 24546 2.7352 1.4057 1 26162 7769 17285 17291 25851 25851 0.043898964196841916 LFQSLPEQ 8 Unmodified _LFQSLPEQ_ 0 0 0 REV__nc|ENSG00000124429|Q8WVV4-3|POF1B REV__nc|ENSG00000124429|Q8WVV4-3|POF1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.244384765625 2 481.2531 960.491647 0.23899 0.00011502 -0.011537 -5.5524E-06 0.22746 0.00010946 481.25311439314635 65.101 1.3335 61.818 61.317 62.65 -3.2832 66 38 2 0 0 0 8448 1 12303 12303 2.643 0 1 3279000 + 26163 15776 17286 17292 25852 25852 0.009820786605587273 LFQSTNLVSG 10 Unmodified _LFQSTNLVSG_ 0 0 0 ENST00000310806.8_1_14:45687607-45687652:-|nuORF ENST00000310806.8_1_14:45687607-45687652:-|nuORF ENST00000310806.8_1_14:45687607-45687652:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2832641601562 2 533.282389 1064.55022 0.067801 3.6157E-05 0.2287 0.00012196 0.2965 0.00015812 533.2824926249845 86.162 1.3353 86.162 85.539 86.875 0 96 37 4 0 0 0 0.59928 2 16934 16934;16951 19.257 1.1106 1 8528100 26164 8645 17287 17293 25853;25854 25853 0.020531352350417365 LFRALRRTC 9 Unmodified _LFRALRRTC_ 0 0 0 REV__ENSG00000100078|ENST00000215885|PLA2G3 REV__ENSG00000100078|ENST00000215885|PLA2G3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 379.53662109375 3 379.222082 1134.64442 NaN NaN NaN NaN NaN NaN NaN 67.499 1 64.172 63.672 64.672 -3.3268 0 0 0 0.19636 1 12728 12728 0.073264 0.059453 1 + 26165 14663 17288 17294 25855 25855 0.08247995576175526 LFRDKYRTEIQ 11 Unmodified _LFRDKYRTEIQ_ 0 0 0 ENST00000528744.5_1_11:126137442-126138699:-|nuORF;nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA ENST00000528744.5_1_11:126137442-126138699:-|nuORF ENST00000528744.5_1_11:126137442-126138699:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2679748535156 3 490.268414 1467.78341 NaN NaN NaN NaN NaN NaN NaN 149.84 1 144.64 144.14 145.14 -5.1994 0 0 0 0.22632 1 29027 29027 0.2986 0.18756 1 26166 6819 17289 17295 25856 25856 0.06823191954686081 LFRELYKEL 9 Unmodified _LFRELYKEL_ 0 0 0 REV__ENSG00000184389|ENST00000442999|A3GALT2 REV__ENSG00000184389|ENST00000442999|A3GALT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 404.3089599609375 3 404.23253 1209.67576 -0.25589 -0.00010344 0.20478 8.2779E-05 -0.051108 -2.066E-05 404.23254396752975 137.09 0.72879 132.25 131.9 132.63 -4.84 50 20 3 0 0 0 0.87497 1 26367 26367 8.1555 3.6267 1 4600400 + 26167 18895 17290 17296 25857 25857 0.07930847091279247 LFRELYKEL 9 Unmodified _LFRELYKEL_ 0 0 0 REV__ENSG00000184389|ENST00000442999|A3GALT2 REV__ENSG00000184389|ENST00000442999|A3GALT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 404.23253 1209.67576 -0.0097605 -3.9455E-06 0.10121 4.0914E-05 0.091454 3.6969E-05 404.2323942398435 132.33 0.65361 132.33 132.03 132.68 0 0.1105 8.7362E-05 NaN 8.1555 38 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6079100 + 26168 18895 17290 17296 0.07930847091279247 LFRELYKEL 9 Unmodified _LFRELYKEL_ 0 0 0 REV__ENSG00000184389|ENST00000442999|A3GALT2 REV__ENSG00000184389|ENST00000442999|A3GALT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 404.23253 1209.67576 -0.17032 -6.8851E-05 0.011091 4.4834E-06 -0.15923 -6.4367E-05 404.232495187171 136.76 0.70624 132.12 131.81 132.52 -4.6399 -0.096512 -2.193E-05 NaN 8.1555 48 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6097500 + 26169 18895 17290 17296 0.07930847091279247 LFRELYKEL 9 Unmodified _LFRELYKEL_ 0 0 0 REV__ENSG00000184389|ENST00000442999|A3GALT2 REV__ENSG00000184389|ENST00000442999|A3GALT2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 404.23253 1209.67576 0.046678 1.8869E-05 -0.17183 -6.9458E-05 -0.12515 -5.059E-05 404.2324125854088 137.11 0.66875 132.18 131.84 132.51 -4.9216 -0.037833 -0.00024376 NaN 8.1555 48 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4488400 + 26170 18895 17290 17296 0.07930847091279247 LFRFFRMRKWR 11 Unmodified _LFRFFRMRKWR_ 0 0 0 PREX2|p.S565Rfs*10|1|0.31|ENSG00000046889|chr8:68080486-68080486|T/-|frameshift_variant PREX2|p.S565Rfs*10|1|0.31|ENSG00000046889|chr8:68080486-68080486|T/-|frameshift_variant PREX2|p.S565Rfs*10|1|0.31|ENSG00000046889|chr8:68080486-68080486|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.76953125 3 548.313635 1641.91908 0.21938 0.00012029 -0.89277 -0.00048952 -0.6734 -0.00036923 548.3142319791315 164.43 0.10439 159.39 159.31 159.42 -5.0446 4 2 2 0 0 0 0.96227 1 32050 32050 0 0 1 6553400 26171 12827 17291 17297 25858 25858 0.12379233055162331 LFRFQHYKWRF 11 Unmodified _LFRFQHYKWRF_ 0 0 0 REV__nc|ENSG00000198373|O00308-2|WWP2 REV__nc|ENSG00000198373|O00308-2|WWP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7862548828125 3 543.293005 1626.85719 0.138 7.4977E-05 3.7723 0.0020494 3.9103 0.0021244 543.6289316340844 148.22 0.1803 143.06 142.94 143.12 -5.1557 6 4 2 0 0 0 0.96225 1 28664 28664 0.45452 0.38125 1 1205400 + 26172 19409 17292 17298 25859 25859 0.06883204907649088 LFRIRKKLLS 10 Unmodified _LFRIRKKLLS_ 0 0 0 REV__nc|ENSG00000163512|Q9H6S1-3|AZI2 REV__nc|ENSG00000163512|Q9H6S1-3|AZI2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25347900390625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 157.8 1 157.8 157.3 158.3 0 0 0 0 0.22588 1 31678 31678 0.77653 0 1 + 26173 13164 17293 17299 25860 25860 0.21390489652844735 LFRIRKKLLS 10 Unmodified _LFRIRKKLLS_ 0 0 0 REV__nc|ENSG00000163512|Q9H6S1-3|AZI2 REV__nc|ENSG00000163512|Q9H6S1-3|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2389831542969 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 53.958 1 50.863 50.363 51.363 -3.0954 0 0 0 0.22588 1 9974 9974 0.77653 0 1 + 26174 13164 17293 17299 25861 25861 0.21390489652844735 LFRIRKKLLS 10 Unmodified _LFRIRKKLLS_ 0 0 0 REV__nc|ENSG00000163512|Q9H6S1-3|AZI2 REV__nc|ENSG00000163512|Q9H6S1-3|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2408447265625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 97.757 1 93.838 93.338 94.338 -3.9194 0 0 0 2.8426 1 18763 18763 0.0013812 0 1 + 26175 13164 17293 17299 25862 25862 0.21390489652844735 LFRIRKKLLS 10 Unmodified _LFRIRKKLLS_ 0 0 0 REV__nc|ENSG00000163512|Q9H6S1-3|AZI2 REV__nc|ENSG00000163512|Q9H6S1-3|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2408447265625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 97.77 1 93.85 93.35 94.35 -3.9194 0 0 0 0.22588 1 18765 18765 0.77653 0 1 + 26176 13164 17293 17299 25863 25863 0.21390489652844735 LFRLVVLNL 9 Unmodified _LFRLVVLNL_ 0 0 0 REV__ENSG00000124249|ENST00000372861|KCNK15 REV__ENSG00000124249|ENST00000372861|KCNK15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7833251953125 2 543.855327 1085.6961 0.2756 0.00014989 -3.1118 -0.0016924 -2.8362 -0.0015425 544.3525351134645 128.23 0.21985 123.6 123.51 123.73 -4.6292 7 5 2 0 0 0 0.77732 1 25283 25283 7.9102 0 1 810120 + 26177 15767 17294 17300 25864 25864 0.1566806254174935 LFRRGPRCH 9 Unmodified _LFRRGPRCH_ 0 0 0 ENST00000559816.1_1_15:50534715-50534793:-|nuORF ENST00000559816.1_1_15:50534715-50534793:-|nuORF ENST00000559816.1_1_15:50534715-50534793:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2091369628906 3 381.210176 1140.6087 NaN NaN NaN NaN NaN NaN NaN 135.45 1 135.45 134.95 135.95 0 0 0 0 0.23508 1 26829 26829 2.9952 0.15196 1 26178 11277 17295 17301 25865 25865 0.04401958119183291 LFRRLLLR 8 Unmodified _LFRRLLLR_ 0 0 0 REV__ENSG00000100348|ENST00000216185|TXN2 REV__ENSG00000100348|ENST00000216185|TXN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7886962890625 2 543.86656 1085.71857 NaN NaN NaN NaN NaN NaN NaN 130.07 1 130.07 129.57 130.57 0 0 0 0 0.21486 1 25700 25700 0.79363 0 1 + 26179 14697 17296 17302 25866 25866 0.1791370673001893 LFRSLKQVHL 10 Unmodified _LFRSLKQVHL_ 0 0 0 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 414.25579833984375 3 414.255669 1239.74518 NaN NaN NaN NaN NaN NaN NaN 135.3 1 130.46 129.96 130.96 -4.8307 0 0 0 2.8426 1 26047 26047 1.9064 1.8626 1 26180 6312 17297 17303 25867 25867 0.1348935083071865 LFRVVDQQKK 10 Unmodified _LFRVVDQQKK_ 0 0 0 REV__SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant REV__SH3BGRL2|p.P55Rfs*41|2|0.28|ENSG00000198478|chr6:79673727-79673727|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7705688476562 2 630.874779 1259.73501 NaN NaN NaN NaN NaN NaN NaN 56.826 1 53.636 53.136 54.136 -3.1895 0 0 0 2.8426 1 10541 10541 0.69767 0.19171 1 + 26181 13408 17298 17304 25868 25868 0.11552743105448826 LFRWLYEKFRY 11 Unmodified _LFRWLYEKFRY_ 0 0 0 ENSG00000167904|ENST00000434581|TMEM68 ENSG00000167904|ENST00000434581|TMEM68 ENSG00000167904|ENST00000434581|TMEM68 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.273193359375 3 540.961033 1619.86127 0.27877 0.0001508 2.5437 0.001376 2.8224 0.0015268 540.9622516362901 112.73 0.30579 112.73 112.53 112.83 0 10 8 2 0 0 0 0.96212 1 22159 22159 2.6312 2.1253 1 2541900 26182 5860 17299 17305 25869 25869 0.0761324961072205 LFRWLYEKFRY 11 Unmodified _LFRWLYEKFRY_ 0 0 0 ENSG00000167904|ENST00000434581|TMEM68 ENSG00000167904|ENST00000434581|TMEM68 ENSG00000167904|ENST00000434581|TMEM68 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2617797851562 3 540.961033 1619.86127 0.45276 0.00024493 2.2195 0.0012007 2.6723 0.0014456 540.9615540239373 120.26 0.2401 115.79 115.65 115.89 -4.467 9 6 2 0 0 0 0.96102 1 23146 23146 1.2148 0.70888 1 826790 26183 5860 17299 17305 25870 25870 0.0761324961072205 LFRWWRRRWNP 11 Unmodified _LFRWWRRRWNP_ 0 0 0 ENST00000463462.5_1_7:148982563-148988696:+|nuORF;ENST00000426347.5_1_7:148982610-148985528:+|nuORF;ENST00000481817.5_1_7:148984700-148990670:+|nuORF ENST00000463462.5_1_7:148982563-148988696:+|nuORF ENST00000463462.5_1_7:148982563-148988696:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 557.7374877929688 3 558.307649 1671.90112 0.19969 0.00011149 -1.9385 -0.0010823 -1.7388 -0.00097078 558.6403295504954 127.53 0.17904 122.83 122.71 122.89 -4.6998 6 4 2 0 0 0 0.89135 1 24533 24533 0.026206 0.025642 1 849530 26184 9724 17300 17306 25871 25871 0.09204234124672439 LFSDVDSPY 9 Unmodified _LFSDVDSPY_ 0 0 0 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26904296875 2 521.740022 1041.46549 0.32842 0.00017135 0.24088 0.00012567 0.5693 0.00029703 521.7400775970345 108.73 0.49812 108.73 108.49 108.98 0 23 13 2 0 0 0 0.50294 1 21418 21418 19.439 1.304 1 1752500 26185 6096 17301 17307 25872 25872 -0.05358235301559944 LFSKEISFI 9 Unmodified _LFSKEISFI_ 0 0 0 REV__ENST00000489256.5_1_2:242051902-242052094:-|nuORF REV__ENST00000489256.5_1_2:242051902-242052094:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7708740234375 2 542.307875 1082.6012 0.47678 0.00025856 -0.82589 -0.00044789 -0.34911 -0.00018933 542.3076281480057 154.25 0.80872 149.03 148.66 149.46 -5.2209 53 22 4 0 0 0 0.58804 1 29942 29942 13.906 2.2658 1 2957800 + 26186 22286 17302 17308 25873 25873 0.06320084279900584 LFSKEISFI 9 Unmodified _LFSKEISFI_ 0 0 0 REV__ENST00000489256.5_1_2:242051902-242052094:-|nuORF REV__ENST00000489256.5_1_2:242051902-242052094:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.307875 1082.6012 0.3598 0.00019512 -0.053859 -2.9208E-05 0.30594 0.00016591 542.3076357265267 153.73 0.5674 148.96 148.8 149.36 -4.7684 -0.031374 0.00052663 NaN 13.906 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2689100 + 26187 22286 17302 17308 0.06320084279900584 LFSKEISFI 9 Unmodified _LFSKEISFI_ 0 0 0 REV__ENST00000489256.5_1_2:242051902-242052094:-|nuORF REV__ENST00000489256.5_1_2:242051902-242052094:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.307875 1082.6012 0.47678 0.00025856 -0.82589 -0.00044789 -0.34911 -0.00018933 542.3076281480057 154.25 0.80872 149.03 148.66 149.46 -5.2209 0.031374 -0.00031073 NaN 13.906 53 22 4 NaN NaN NaN NaN 0 NaN NaN 0 2957800 + 26188 22286 17302 17308 0.06320084279900584 LFSKFILL 8 Unmodified _LFSKFILL_ 0 0 0 REV__ENST00000443503.6_2_3:38023262-38023379:+|nuORF REV__ENST00000443503.6_2_3:38023262-38023379:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2539978027344 2 490.812596 979.61064 0.51755 0.00025402 -0.16885 -8.2875E-05 0.3487 0.00017115 490.8124402119852 105.12 0.70583 101.03 100.69 101.4 -4.0913 39 19 3 0 0 0 1.0147 1 20249 20249 2.3027 0 1 4515000 + 26189 21730 17303 17309 25874 25874 0.12001897356083191 LFSKFILL 8 Unmodified _LFSKFILL_ 0 0 0 REV__ENST00000443503.6_2_3:38023262-38023379:+|nuORF REV__ENST00000443503.6_2_3:38023262-38023379:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.812596 979.61064 0.1742 8.5501E-05 0.20081 9.8559E-05 0.37501 0.00018406 490.81262228320844 105.47 0.63812 101.09 100.73 101.37 -4.3764 -0.0009485 0.00011462 NaN 0.6015 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4213400 + 26190 21730 17303 17309 0.12001897356083191 LFSPPPPAGP 10 Unmodified _LFSPPPPAGP_ 0 0 0 ENST00000426635.6_1_6:72128415-72130440:-|nuORF ENST00000426635.6_1_6:72128415-72130440:-|nuORF ENST00000426635.6_1_6:72128415-72130440:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2542419433594 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 54.702 1 54.702 54.202 55.202 0 0 0 0 0.22588 1 10435 10435 12.532 1.7076 1 26191 9729 17304 17310 25875 25875 0.027349729028514957 LFSRESFA 8 Unmodified _LFSRESFA_ 0 0 0 REV__NLRP12|p.V730*|2|0.38|ENSG00000142405|chr19:53807550-53807550|C/-|frameshift_variant REV__NLRP12|p.V730*|2|0.38|ENSG00000142405|chr19:53807550-53807550|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7301025390625 2 478.745442 955.476331 -0.022564 -1.0803E-05 0.44166 0.00021144 0.41909 0.00020064 478.7456882425647 40.626 1.086 38.087 37.78 38.866 -2.5398 55 30 3 0 0 0 0.60622 1 7321 7321 21.747 0 1 14654000 + 26192 16669 17305 17311 25876 25876 -0.003187881366216061 LFSSLHYLFEW 11 Unmodified _LFSSLHYLFEW_ 0 0 0 REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24249267578125 3 481.243206 1440.70779 NaN NaN NaN NaN NaN NaN NaN 102.48 1 102.48 101.98 102.98 0 0 0 0 0.22632 1 20129 20129 0.172 0.14579 1 + 26193 24595 17306 17312 25877 25877 0.005062147743956302 LFSSLHYLFEW 11 Unmodified _LFSSLHYLFEW_ 0 0 0 REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2430725097656 3 481.243206 1440.70779 NaN NaN NaN NaN NaN NaN NaN 77.566 1 74.103 73.603 74.603 -3.4633 0 0 0 0.22632 1 15144 15144 0.026206 0 1 + 26194 24595 17306 17312 25878 25878 0.005062147743956302 LFSSLHYLFEW 11 Unmodified _LFSSLHYLFEW_ 0 0 0 REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24493408203125 3 481.243206 1440.70779 NaN NaN NaN NaN NaN NaN NaN 101 1 96.836 96.336 97.336 -4.1594 0 0 0 0.22632 1 19855 19855 0.026206 0 1 + 26195 24595 17306 17312 25879 25879 0.005062147743956302 LFSVPHEQ 8 Unmodified _LFSVPHEQ_ 0 0 0 REV__NLRP14|p.Y443Tfs*10|1|0.25|ENSG00000158077|chr11:7043350-7043350|T/-|frameshift_variant REV__NLRP14|p.Y443Tfs*10|1|0.25|ENSG00000158077|chr11:7043350-7043350|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7257385253906 2 478.745442 955.476331 0.082713 3.9599E-05 0.18709 8.957E-05 0.26981 0.00012917 478.74553730606044 40.525 0.84303 38.036 37.757 38.6 -2.4896 54 23 3 0 0 0 0.54916 1 7314 7314 25.399 1.3787 1 10938000 + 26196 17321 17307 17313 25880 25880 -0.003187881366216061 LFTAIALV 8 Unmodified _LFTAIALV_ 0 0 0 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 424.2677307128906 2 424.268022 846.521491 NaN NaN NaN NaN NaN NaN NaN 153.79 1 149.02 148.52 149.52 -4.7684 0 0 0 0.21486 1 30562 30562 2.8892 0 1 + 26197 18433 17308 17314 25881 25881 0.09209062396541867 LFTDLERKG 9 Unmodified _LFTDLERKG_ 0 0 0 nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 96.974 1 96.974 96.474 97.474 0 0 0 0 0.23508 1 19001 19001 2.7352 0.89096 1 26198 2699 17309 17315 25882 25882 0.0461712798901317 LFTDLERKG 9 Unmodified _LFTDLERKG_ 0 0 0 nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20196533203125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 138.95 1 134 133.5 134.5 -4.952 0 0 0 0.23508 1 26726 26726 1.1933 0 1 26199 2699 17309 17315 25883 25883 0.0461712798901317 LFTDLERKG 9 Unmodified _LFTDLERKG_ 0 0 0 nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20654296875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 115.86 1 111.5 111 112 -4.3585 0 0 0 0.23508 1 22302 22302 1.1933 0 1 26200 2699 17309 17315 25884 25884 0.0461712798901317 LFTGLQPGPGV 11 Unmodified _LFTGLQPGPGV_ 0 0 0 ENST00000601593.5_3_19:58445233-58446731:-|nuORF ENST00000601593.5_3_19:58445233-58446731:-|nuORF ENST00000601593.5_3_19:58445233-58446731:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.783203125 2 543.303124 1084.5917 0.20544 0.00011162 -0.40946 -0.00022246 -0.20402 -0.00011084 543.3028519212389 91.711 0.45408 87.903 87.616 88.07 -3.8083 19 12 2 0 0 0 0.50871 1 17518 17518 22.736 2.2827 1 1518300 26201 11707 17310 17316 25885 25885 0.05278315994382865 LFTHSKRSF 9 Unmodified _LFTHSKRSF_ 0 0 0 REV__ENSG00000173786|ENST00000393892|CNP REV__ENSG00000173786|ENST00000393892|CNP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2066955566406 3 374.873336 1121.59818 -0.20285 -7.6043E-05 0.24301 9.1097E-05 0.040157 1.5054E-05 374.87355364676654 110.08 0.38373 105.63 105.34 105.73 -4.4518 17 10 2 0 0 0 0.6797 1 21131 21131 7.609 0.57187 1 1056100 + 26202 18374 17311 17317 25886 25886 0.04224253945744749 LFTLLRLLY 9 Unmodified _LFTLLRLLY_ 0 0 0 REV__STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant REV__STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.312255859375 2 576.362985 1150.71142 NaN NaN NaN NaN NaN NaN NaN 125.33 1 125.33 124.83 125.83 0 0 0 0 0.23508 1 24718 24718 5.2307 0.47466 1 + 26203 19797 17312 17318 25887 25887 0.14208929338951748 LFTTHLQLI 9 Unmodified _LFTTHLQLI_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.794677734375 2 543.321317 1084.62808 0.24937 0.00013549 -0.25401 -0.00013801 -0.0046435 -2.5229E-06 543.8230884355123 138.43 0.87207 133.79 133.33 134.2 -4.6413 66 24 4 0 0 0 0.42289 1 27293 27293 32.305 32.305 1 10388000 26204 1085 17313 17319 25888 25888 0.08915192891095103 LFTTHLQLI 9 Unmodified _LFTTHLQLI_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7902221679688 2 543.321317 1084.62808 0.33589 0.00018249 -0.63389 -0.0003444 -0.298 -0.00016191 543.319325266287 138.72 0.81554 133.87 133.54 134.35 -4.8492 62 22 4 0 0 0 0.19271 1 26727 26727 46.021 13.715 1 6578500 26205 1085 17313 17319 25889 25889 0.08915192891095103 LFTTIPGAHS 10 Unmodified _LFTTIPGAHS_ 0 0 0 nc|ENSG00000236438|C9JC47|FAM157A;nc|ENSG00000233013|P0CG42|FAM157B;nc|ENSG00000260528|P0CG43|FAM157C nc|ENSG00000236438|C9JC47|FAM157A nc|ENSG00000236438|C9JC47|FAM157A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.280029296875 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 97.392 1 93.157 92.657 93.657 -4.2348 0 0 0 0.21574 1 18603 18603 25.399 8.457 1 26206 12610 17314 17320 25890 25890 0.025174564432290936 LFTTKCLGP 9 Unmodified _LFTTKCLGP_ 0 0 0 REV__ENSG00000137040|ENST00000259569|RANBP6 REV__ENSG00000137040|ENST00000259569|RANBP6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2674560546875 2 490.267696 978.520839 NaN NaN NaN NaN NaN NaN NaN 148.98 1 143.82 143.32 144.32 -5.1557 0 0 0 0.23508 1 28852 28852 9.3474 1.4373 1 + 26207 16371 17315 17321 25891 25891 0.030718996852101554 LFTVFLFLLM 10 Unmodified _LFTVFLFLLM_ 0 0 0 nc|ENSG00000140798|Q96J65-5|ABCC12;nc|ENSG00000140798|Q96J65-3|ABCC12;nc|ENSG00000140798|Q96J65-2|ABCC12;ABCC12|p.M936Yfs*84|1|0.32|ENSG00000140798|chr16:48104236-48104237|-/A|frameshift_variant;ABCC12|p.R1075Cfs*54|1|0.38|ENSG00000140798|chr16:48091182-48091183|-/CA|frameshift_variant;nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12 nc|ENSG00000140798|Q96J65-5|ABCC12 nc|ENSG00000140798|Q96J65-5|ABCC12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7761840820312 2 622.361596 1242.70864 0.5455 0.0003395 1.6725 0.0010409 2.218 0.0013804 622.8622915491219 70.633 0.34974 67.166 66.919 67.269 -3.467 16 9 2 0 0 0 0.75442 1 13353 13353 4.3292 0 1 2057500 26208 16 17316 17322 25892 25892 0.09699337889765047 LFTYPIYAV 9 Unmodified _LFTYPIYAV_ 0 0 0 sp|F5HC14|UL119_HCMVMViralFc-gammareceptor-likeproteinUL119OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL119/UL118PE=3SV=1;sp|P16739|UL119_HCMVAViralFc-gammareceptor-likeproteinUL119OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL119/UL118PE=2SV=2 sp|F5HC14|UL119_HCMVMViralFc-gammareceptor-likeproteinUL119OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL119/UL118PE=3SV=1 sp|F5HC14|UL119_HCMVMViralFc-gammareceptor-likeproteinUL119OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL119/UL118PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7938842773438 2 543.797143 1085.57973 NaN NaN NaN NaN NaN NaN NaN 154.08 1 149.32 148.82 149.82 -4.7684 0 0 0 0.20628 1 30624 30624 21.747 3.6117 1 26209 25720 17317 17323 25893 25893 0.040366992511508215 LFVCGPTH 8 Unmodified _LFVCGPTH_ 0 0 0 REV__PER3|p.H914Dfs*28|1|0.08|ENSG00000049246|chr1:7827691-7827692|-/TGATATC|frameshift_variant REV__PER3|p.H914Dfs*28|1|0.08|ENSG00000049246|chr1:7827691-7827692|-/TGATATC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21685791015625 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 91.072 1 87.263 86.763 87.763 -3.8083 0 0 0 0.21486 1 17432 17432 5.7604 0 1 + 26210 14078 17318 17324 25894 25894 -0.019854982088986617 LFVGFLRKSI 10 Unmodified _LFVGFLRKSI_ 0 0 0 REV__ENST00000457665.5_1_22:38746838-38794807:-|nuORF REV__ENST00000457665.5_1_22:38746838-38794807:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2567138671875 2 590.366059 1178.71756 NaN NaN NaN NaN NaN NaN NaN 121.73 1 117.18 116.68 117.68 -4.5476 0 0 0 0.22588 1 23992 23992 3.9444 0 1 + 26211 21859 17319 17325 25895 25895 0.13535447570461656 LFVIHKSL 8 Unmodified _LFVIHKSL_ 0 0 0 nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8|DNAH14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7241516113281 2 478.80002 955.585488 NaN NaN NaN NaN NaN NaN NaN 117.49 1 117.49 116.99 117.99 0 0 0 0 0.21486 1 23144 23144 10.183 0 1 26212 7016;12518 17320 17326 25896 25896 0.10591842553515107 LFVIIIVLI 9 Unmodified _LFVIIIVLI_ 0 0 0 nc|ENSG00000124222|O14662-6|STX16;nc|ENSG00000124222|O14662-2|STX16;nc|ENSG00000124222|O14662-4|STX16;nc|ENSG00000124222|O14662-5|STX16;ENSG00000124222|ENST00000371141|STX16 nc|ENSG00000124222|O14662-6|STX16 nc|ENSG00000124222|O14662-6|STX16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2703247070312 2 521.867372 1041.72019 0.37094 0.00019358 -3.3019 -0.0017231 -2.9309 -0.0015296 521.8662418289257 146.53 0.13464 141.53 141.43 141.57 -5 5 3 2 0 0 0 0.63929 1 28351 28351 0.0033805 0 1 985760 26213 3304 17321 17327 25897 25897 0.20099902975402983 LFVLDGVSL 9 Unmodified _LFVLDGVSL_ 0 0 0 ENST00000409858.7_1_9:139978422-139978698:+|nuORF ENST00000409858.7_1_9:139978422-139978698:+|nuORF ENST00000409858.7_1_9:139978422-139978698:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78302001953125 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 138.35 1 133.43 132.93 133.93 -4.9216 0 0 0 0.21848 1 26603 26603 18.135 0 1 26214 9569 17322 17328 25898 25898 0.06612126217100922 LFVNSTREL 9 Unmodified _LFVNSTREL_ 0 0 0 REV__nc|ENSG00000204634|O95759|TBC1D8 REV__nc|ENSG00000204634|O95759|TBC1D8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 92.859 1 92.859 92.359 93.359 0 0 0 0 0.23508 1 18159 18159 1.0715 0.61312 1 + 26215 19556 17323 17329 25899 25899 0.0461712798901317 LFVNSTREL 9 Unmodified _LFVNSTREL_ 0 0 0 REV__nc|ENSG00000204634|O95759|TBC1D8 REV__nc|ENSG00000204634|O95759|TBC1D8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 101.36 1 101.36 100.86 101.86 0 0 0 0 0.23508 1 19892 19892 2.7352 0.23671 1 + 26216 19556 17323 17329 25900 25900 0.0461712798901317 LFVNSTREL 9 Unmodified _LFVNSTREL_ 0 0 0 REV__nc|ENSG00000204634|O95759|TBC1D8 REV__nc|ENSG00000204634|O95759|TBC1D8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 102.89 1 102.89 102.39 103.39 0 0 0 0 0.23508 1 20212 20212 4.5289 1.7937 1 + 26217 19556 17323 17329 25901 25901 0.0461712798901317 LFVNSTREL 9 Unmodified _LFVNSTREL_ 0 0 0 REV__nc|ENSG00000204634|O95759|TBC1D8 REV__nc|ENSG00000204634|O95759|TBC1D8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2011413574219 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 115.91 1 111.55 111.05 112.05 -4.3585 0 0 0 0.23508 1 22314 22314 2.7352 0 1 + 26218 19556 17323 17329 25902 25902 0.0461712798901317 LFVVLILLSY 10 Unmodified _LFVVLILLSY_ 0 0 0 REV__ENSG00000203730|ENST00000367565|TEDDM1 REV__ENSG00000203730|ENST00000367565|TEDDM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.25634765625 2 590.373018 1178.73148 NaN NaN NaN NaN NaN NaN NaN 64.019 1 61.021 60.521 61.521 -2.9975 0 0 0 0.22588 1 12375 12375 3.9444 2.1002 1 + 26219 19496 17324 17330 25903 25903 0.14926680278904314 LFWEPIAIY 9 Unmodified _LFWEPIAIY_ 0 0 0 REV__CPXM2|p.G655Efs*9|1|0.31|ENSG00000121898|chr10:123754718-123754718|T/-|frameshift_variant REV__CPXM2|p.G655Efs*9|1|0.31|ENSG00000121898|chr10:123754718-123754718|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3245239257812 2 576.310418 1150.60628 NaN NaN NaN NaN NaN NaN NaN 99.718 1 99.718 99.218 100.22 0 0 0 0 0.19691 1 19555 19555 1.2148 0.94944 1 + 26220 13575 17325 17331 25904 25904 0.037003881425107465 LFWSQIQSEEQ 11 Unmodified _LFWSQIQSEEQ_ 0 0 0 ENST00000256190.12_1_11:9817484-9829655:-|nuORF ENST00000256190.12_1_11:9817484-9829655:-|nuORF ENST00000256190.12_1_11:9817484-9829655:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2431945800781 3 465.557741 1393.6514 NaN NaN NaN NaN NaN NaN NaN 155.81 1 155.81 155.31 156.31 0 0 0 0 0.23698 1 31241 31241 1.4551 0 1 26221 8254 17326 17332 25905 25905 -0.02968457852875872 LFWVVLLVY 9 Unmodified _LFWVVLLVY_ 0 0 0 ENSG00000175398|ENST00000309675|OR10P1 ENSG00000175398|ENST00000309675|OR10P1 ENSG00000175398|ENST00000309675|OR10P1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3192749023438 2 576.346803 1150.67905 NaN NaN NaN NaN NaN NaN NaN 142.53 1 137.63 137.13 138.13 -4.8982 0 0 0 0.19634 1 27501 27501 0.40827 0 1 26222 6407 17327 17333 25906 25906 0.10974141935935222 LFWYLLQRRFR 11 Unmodified _LFWYLLQRRFR_ 0 0 0 REV__nc|ENSG00000100979|P55058-2|PLTP REV__nc|ENSG00000100979|P55058-2|PLTP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2769165039062 3 533.308655 1596.90414 NaN NaN NaN NaN NaN NaN NaN 132.97 1 128.33 127.83 128.83 -4.6399 0 0 0 0.22632 1 26214 26214 0.0059557 0 1 + 26223 23973 17328 17334 25907 25907 0.12956064458785477 LFWYVEYPS 9 Unmodified _LFWYVEYPS_ 0 0 0 nc|ENSG00000211819|A0A0B4J280|TRAV40 nc|ENSG00000211819|A0A0B4J280|TRAV40 nc|ENSG00000211819|A0A0B4J280|TRAV40 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2911987304688 2 602.289682 1202.56481 NaN NaN NaN NaN NaN NaN NaN 155.54 1 150.29 149.79 150.79 -5.2526 0 0 0 0.23508 1 30162 30162 5.2307 0.47466 1 26224 12581 17329 17335 25908 25908 -0.028367926168129998 LFYGTITF 8 Unmodified _LFYGTITF_ 0 0 0 OR5P2|p.I305Nfs*5|1|0.38|ENSG00000183303|chr11:7796029-7796030|-/T|frameshift_variant;ENSG00000182334|ENST00000641167|OR5P3;ENSG00000183303|ENST00000329434|OR5P2 OR5P2|p.I305Nfs*5|1|0.38|ENSG00000183303|chr11:7796029-7796030|-/T|frameshift_variant OR5P2|p.I305Nfs*5|1|0.38|ENSG00000183303|chr11:7796029-7796030|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2540588378906 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 153.77 1 148.55 148.05 149.05 -5.2209 0 0 0 0.21486 1 29805 29805 11.114 0 1 26225 6785 17330 17336 25909 25909 0.013841681542885453 LFYREVSE 8 Unmodified _LFYREVSE_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2623901367188 2 521.763832 1041.51311 -0.63479 -0.00033121 1.2638 0.00065938 0.62897 0.00032817 521.7643853738174 113.69 0.48805 109.17 108.96 109.44 -4.5259 24 13 2 0 0 0 0.52597 1 21800 21800 26.884 0.61551 1 1694400 26226 7957 17331 17337 25910 25910 -0.00598536310712916 LFYTPQIFES 10 Unmodified _LFYTPQIFES_ 0 0 0 REV__ENST00000590008.5_1_19:38161161-38167293:-|nuORF REV__ENST00000590008.5_1_19:38161161-38167293:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7742919921875 2 622.813522 1243.61249 NaN NaN NaN NaN NaN NaN NaN 117.95 1 113.55 113.05 114.05 -4.4088 0 0 0 0.22588 1 22700 22700 10.074 3.3508 1 + 26227 23316 17332 17338 25911 25911 0.0004286158339255053 LGAAAGKV 8 Unmodified _LGAAAGKV_ 0 0 0 SPDYC|p.G40Afs*62|1|0.31|ENSG00000204710|chr11:65171414-65171414|G/-|frameshift_variant SPDYC|p.G40Afs*62|1|0.31|ENSG00000204710|chr11:65171414-65171414|G/-|frameshift_variant SPDYC|p.G40Afs*62|1|0.31|ENSG00000204710|chr11:65171414-65171414|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.20562744140625 2 343.713414 685.412274 -0.093896 -3.2273E-05 -0.30245 -0.00010396 -0.39635 -0.00013623 343.71336470457015 22.722 0.25124 21.269 21.154 21.405 -1.4535 8 6 2 0 0 0 8448 1 3643 3643 6.2058 5.579 1 225520 26228 25778 17333 17339 25912 25912 0.056984764970820834 LGAAGFLLIS 10 Unmodified _LGAAGFLLIS_ 0 0 0 REV__ENSG00000124302|ENST00000650847|CHST8 REV__ENSG00000124302|ENST00000650847|CHST8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2433776855469 2 481.289485 960.564418 NaN NaN NaN NaN NaN NaN NaN 105.5 1 101.23 100.73 101.73 -4.2638 0 0 0 2.8426 1 20763 20763 0.063865 0 1 + 26229 15772 17334 17340 25913 25913 0.08255832453994572 LGAAQCPALWG 11 Unmodified _LGAAQCPALWG_ 0 0 0 ENST00000481436.5_1_5:177642388-177652501:-|nuORF ENST00000481436.5_1_5:177642388-177652501:-|nuORF ENST00000481436.5_1_5:177642388-177652501:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7859497070312 2 543.773677 1085.5328 NaN NaN NaN NaN NaN NaN NaN 157.71 1 152.92 152.42 153.42 -4.7885 0 0 0 0.22775 1 31365 31365 10.074 2.1638 1 26230 10373 17335 17341 25914 25914 -0.006544835716113084 LGAAVAAGEPG 11 Unmodified _LGAAVAAGEPG_ 0 0 0 REV__ENST00000378536.4_1_1:2240387-2240723:+|nuORF REV__ENST00000378536.4_1_1:2240387-2240723:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386169433594 2 456.742899 911.471246 -0.066457 -3.0354E-05 0.15813 7.2226E-05 0.091677 4.1873E-05 456.742949700385 68.271 0.89362 68.271 67.894 68.788 0 63 24 4 0 0 0 0.52819 1 13176 13176 21.747 4.6338 1 36512000 + 26231 21117 17336 17342 25915 25915 0.01196908000770236 LGACQMVMC 9 Unmodified _LGACQMVMC_ 0 0 0 ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-2|PREX1;ENST00000482556.5_1_20:47242425-47249020:-|nuORF ENSG00000124126|ENST00000371941|PREX1 ENSG00000124126|ENST00000371941|PREX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7249755859375 2 478.197044 954.379536 0.32015 0.0001531 -1.1249 -0.00053792 -0.80474 -0.00038483 478.1963226431859 30.371 0.49264 28.478 28.134 28.627 -1.8928 18 13 2 0 0 0 0.77732 1 5233 5233 7.9102 0 1 657990 26232 3291 17337 17343 25916 25916 -0.09947881275581949 LGADGPQAEP 10 Unmodified _LGADGPQAEP_ 0 0 0 REV__ENST00000257575.8_1_12:117191798-117217041:+|nuORF REV__ENST00000257575.8_1_12:117191798-117217041:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7332458496094 2 477.729989 953.445425 -0.093657 -4.4743E-05 0.18885 9.0219E-05 0.095192 4.5476E-05 477.73008810891207 34.861 0.6506 34.861 34.449 35.099 0 40 18 3 0 0 0 0.2791 1 6366 6366 3.5927 0.0056165 1 4188300 + 26233 20141 17338 17344 25917 25917 -0.03315986241511837 LGADGPQAEP 10 Unmodified _LGADGPQAEP_ 0 0 0 REV__ENST00000257575.8_1_12:117191798-117217041:+|nuORF REV__ENST00000257575.8_1_12:117191798-117217041:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.729989 953.445425 -0.39467 -0.00018855 0.48281 0.00023065 0.088145 4.2109E-05 477.7302295288146 37.195 0.75776 34.726 34.259 35.017 -2.4688 -0.063014 0.00028686 NaN 3.5927 42 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3713700 + 26234 20141 17338 17344 -0.03315986241511837 LGADGPQAEP 10 Unmodified _LGADGPQAEP_ 0 0 0 REV__ENST00000257575.8_1_12:117191798-117217041:+|nuORF REV__ENST00000257575.8_1_12:117191798-117217041:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.729989 953.445425 0.083815 4.0041E-05 0.09003 4.301E-05 0.17384 8.3051E-05 477.73001296479043 37.145 0.85629 34.797 34.311 35.167 -2.3479 0.0077901 -8.8425E-05 NaN 3.5927 48 24 4 NaN NaN NaN NaN 0 NaN NaN 0 4141500 + 26235 20141 17338 17344 -0.03315986241511837 LGADSVQTQY 10 Unmodified _LGADSVQTQY_ 0 0 0 REV__ENSG00000134247|ENST00000393203|PTGFRN REV__ENSG00000134247|ENST00000393203|PTGFRN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2621459960938 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 151.79 1 146.61 146.11 147.11 -5.1759 0 0 0 0.22561 1 29415 29415 16.942 0 1 + 26236 16199 17339 17345 25918 25918 -0.028280455242793323 LGAEAYQR 8 Unmodified _LGAEAYQR_ 0 0 0 ENST00000340634.4_1_3:142681054-142682041:-|nuORF ENST00000340634.4_1_3:142681054-142682041:-|nuORF ENST00000340634.4_1_3:142681054-142682041:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 303.20611572265625 3 303.159253 906.45593 NaN NaN NaN NaN NaN NaN NaN 108.88 1 104.5 104 105 -4.3776 0 0 0 0.21486 1 21456 21456 1.6526 0 1 26237 8851 17340 17346 25919 25919 -0.0010395879643283479 LGAEEAQL 8 Unmodified _LGAEEAQL_ 0 0 0 REV__ENST00000489780.5_1_20:25462577-25472157:-|nuORF REV__ENST00000489780.5_1_20:25462577-25472157:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 416.2115173339844 2 415.71635 829.418148 -0.038047 -1.5817E-05 0.49923 0.00020754 0.46118 0.00019172 415.71634198566085 46.008 1.0683 43.143 42.728 43.796 -2.8653 52 30 2 0 0 0 0.2785 1 8307 8307 2.643 0 1 4519900 + 26238 14757 17341 17347 25920 25920 -0.00338469781911499 LGAEKDPG 8 Unmodified _LGAEKDPG_ 0 0 0 ENSG00000183779|ENST00000331569|ZNF703 ENSG00000183779|ENST00000331569|ZNF703 ENSG00000183779|ENST00000331569|ZNF703 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2975158691406 2 393.703243 785.391933 0.13108 5.1607E-05 -0.44474 -0.0001751 -0.31366 -0.00012349 393.70298309945366 75.766 0.65535 75.766 75.512 76.167 0 32 18 2 0 0 0 0.94155 1 14726 14726 22.453 0 1 4702900 26239 6869 17342 17348 25921 25921 -0.009347389533786554 LGAETFYK 8 Unmodified _LGAETFYK_ 0 0 0 REV__BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant REV__BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 79.057 1 75.547 75.047 76.047 -3.5102 0 0 0 0.23107 1 15438 15438 0.063987 0 1 + 26240 13223 17343 17349 25922 25922 0.00354693631857117 LGAGNKACPG 10 Unmodified _LGAGNKACPG_ 0 0 0 ENST00000570453.1_1_17:47657528-47657804:+|nuORF ENST00000570453.1_1_17:47657528-47657804:+|nuORF ENST00000570453.1_1_17:47657528-47657804:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 444.2354736328125 2 444.22382 886.433086 NaN NaN NaN NaN NaN NaN NaN 65.152 1 65.152 64.652 65.652 0 0 0 0 0.22588 1 12553 12553 7.9102 0.62092 1 26241 11416 17344 17350 25923 25923 -0.014673011855620643 LGAHLDRLVPL 11 Unmodified _LGAHLDRLVPL_ 0 0 0 CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant;nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2;CAND2|p.K291Qfs*29|1|0.23|ENSG00000144712|chr3:12813248-12813249|-/C|frameshift_variant CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2950439453125 2 602.364047 1202.71354 0.39629 0.00023871 2.5723 0.0015494 2.9686 0.0017881 602.367750889547 153.79 0.10181 153.79 153.73 153.83 0 4 2 2 0 0 0 0.93546 1 30815 30815 8.1555 1.5252 1 1706300 26242 378 17345 17351 25924 25924 0.1202935807675658 LGAHVAGYAG 10 Unmodified _LGAHVAGYAG_ 0 0 0 nc|ENSG00000101670|Q9Y5X9-2|LIPG;ENSG00000101670|ENST00000261292|LIPG nc|ENSG00000101670|Q9Y5X9-2|LIPG nc|ENSG00000101670|Q9Y5X9-2|LIPG MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2391662597656 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 68.778 1 65.388 64.888 65.888 -3.3903 0 0 0 0.22552 1 12993 12993 18.135 3.2967 1 26243 2081 17346 17352 25925 25925 0.00036345066178000707 LGALFFYM 8 Unmodified _LGALFFYM_ 0 0 0 REV__OR4A47|p.C177Lfs*2|1|0.28|ENSG00000237388|chr11:48489313-48489314|-/T|frameshift_variant REV__OR4A47|p.C177Lfs*2|1|0.28|ENSG00000237388|chr11:48489313-48489314|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2453918457031 2 481.246232 960.477911 NaN NaN NaN NaN NaN NaN NaN 101.64 1 97.324 96.824 97.824 -4.3208 0 0 0 0.22722 1 19453 19453 0.25148 0.12366 1 + 26244 19770 17347 17353 25926 25926 -0.003908703722231621 LGALLKQIPK 10 Unmodified _LGALLKQIPK_ 0 0 0 REV__ENSG00000147437|ENST00000421054|GNRH1 REV__ENSG00000147437|ENST00000421054|GNRH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2786254882812 2 540.860609 1079.70667 NaN NaN NaN NaN NaN NaN NaN 173.67 1 168.88 168.38 169.38 -4.7898 0 0 0 2.8426 1 35441 35441 3.8763 1.97 1 + 26245 16933 17348 17354 25927 25927 0.17000045196164137 LGALTALGSYN 11 Unmodified _LGALTALGSYN_ 0 0 0 ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;nc|ENSG00000130821|P48029-2|SLC6A8 ENST00000485324.1_1_X:152958408-152959565:+|nuORF ENST00000485324.1_1_X:152958408-152959565:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2794189453125 2 540.290214 1078.56587 0.23937 0.00012933 -0.092913 -5.02E-05 0.14645 7.9127E-05 540.2901083306807 87.889 1.1562 84.139 83.309 84.465 -3.7501 70 32 3 0 0 0 0.31319 1 16804 16804 4.6037 1.8717 1 3805000 26246 3642 17349 17355 25928 25928 0.02973421752108152 LGALVSEIR 9 Unmodified _LGALVSEIR_ 0 0 0 ENST00000539672.1_3_12:21654239-21654503:-|nuORF;ENST00000536240.5_1_12:21652530-21654503:-|nuORF;ENST00000536964.5_1_12:21654377-21654569:-|nuORF;ENST00000314748.10_1_12:21654239-21654569:-|nuORF ENST00000539672.1_3_12:21654239-21654503:-|nuORF ENST00000539672.1_3_12:21654239-21654503:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7338562011719 2 479.290017 956.565481 -0.060186 -2.8846E-05 0.046176 2.2132E-05 -0.01401 -6.7147E-06 479.29001695692426 120.3 0.60043 120.3 119.97 120.57 0 26 16 2 0 0 0 0.32967 1 23743 23743 4.477 2.7851 1 3338400 26247 11059 17350 17356 25929 25929 0.08546046822903008 LGAPANEDE 9 Unmodified _LGAPANEDE_ 0 0 0 REV__ENSG00000225110|ENST00000436629|PNMA6F REV__ENSG00000225110|ENST00000436629|PNMA6F MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2254333496094 2 458.206347 914.39814 0.22068 0.00010112 0.060022 2.7502E-05 0.28071 0.00012862 458.20629788755843 19.224 1.4831 19.224 18.687 20.17 0 89 42 3 0 0 0 0.57821 1 3322 3322 14.582 0 1 2465200 + 26248 19722 17351 17357 25930 25930 -0.062482655125222664 LGAPRGCAE 9 Unmodified _LGAPRGCAE_ 0 0 0 PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant;nc|ENSG00000153246|Q13018-2|PLA2R1;ENSG00000153246|ENST00000283243|PLA2R1;PLA2R1|p.L497Pfs*6|1|0.07|ENSG00000153246|chr2:160016675-160016676|-/G|frameshift_variant;PLA2R1|p.A504Qfs*47|1|0.35|ENSG00000153246|chr2:160016656-160016656|T/-|frameshift_variant;PLA2R1|p.Y104Efs*5|1|0.11|ENSG00000153246|chr2:160044957-160044958|-/AGTGGATTTC|frameshift_variant PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21575927734375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 124.09 1 119.36 118.86 119.86 -4.731 0 0 0 0.23411 1 23831 23831 13.508 0.97634 1 26249 4964 17352 17358 25931 25931 -0.023875877026057424 LGARRLPVP 9 Unmodified _LGARRLPVP_ 0 0 0 ENST00000301618.8_1_17:74864738-74864864:+|nuORF ENST00000301618.8_1_17:74864738-74864864:+|nuORF ENST00000301618.8_1_17:74864738-74864864:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2567443847656 2 489.813993 977.613434 0.11208 5.4897E-05 -0.3349 -0.00016404 -0.22283 -0.00010914 489.81375311932277 93.184 0.68896 89.193 88.864 89.553 -3.9907 30 19 2 0 0 0 0.8204 1 18302 18302 4.756 0 1 1672300 26250 8561 17353 17359 25932 25932 0.12373165533608699 LGASALEPRHT 11 Unmodified _LGASALEPRHT_ 0 0 0 REV__ENST00000334678.7_1_22:39925180-39925444:-|nuORF REV__ENST00000334678.7_1_22:39925180-39925444:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3114013671875 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 140.95 1 135.96 135.46 136.46 -4.9877 0 0 0 0.224 1 27134 27134 13.042 2.2185 1 + 26251 20648 17354 17360 25933 25933 0.04019031249208638 LGASQSSQAL 10 Unmodified _LGASQSSQAL_ 0 0 0 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78759765625 2 481.251089 960.487624 0.17266 8.3091E-05 -0.72688 -0.00034981 -0.55422 -0.00026672 481.25074098164595 152.79 0.66927 147.52 147.15 147.81 -5.2669 30 18 2 0 0 0 0.85325 1 29602 29602 7.2892 0 1 2419300 26252 6312 17355 17361 25934 25934 0.005799891668516466 LGASQSSQAL 10 Unmodified _LGASQSSQAL_ 0 0 0 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2503662109375 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 152.55 1 147.37 146.87 147.87 -5.1759 0 0 0 0.22588 1 29568 29568 11.64 2.2929 1 26253 6312 17355 17361 25935 25935 0.005799891668516466 LGATRCMY 8 Unmodified _LGATRCMY_ 0 0 0 REV__L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|90|3|anti-sense REV__L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|90|3|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2304382324219 2 457.714773 913.414993 -0.37488 -0.00017159 -0.94195 -0.00043114 -1.3168 -0.00060273 457.7144874770571 35.212 0.17534 32.818 32.74 32.915 -2.3938 5 4 2 0 0 0 0.73936 1 6496 6496 8.5933 0.68312 1 201500 + 26254 23778 17356 17362 25936 25936 -0.045177594319170566 LGAVHNDMA 9 Unmodified _LGAVHNDMA_ 0 0 0 REV__nc|ENSG00000055118|Q12809-5|KCNH2 REV__nc|ENSG00000055118|Q12809-5|KCNH2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646423339844 3 309.81661 926.428001 -0.059568 -1.8455E-05 0.77725 0.00024081 0.71768 0.00022235 309.8167558200808 79.609 0.91359 75.804 75.475 76.388 -3.8048 59 25 3 0 0 0 0.60888 1 15117 15117 0.029283 0 1 7056500 + 26255 14112 17357 17363 25937 25937 -0.038156050481802595 LGAVHNDMA 9 Unmodified _LGAVHNDMA_ 0 0 0 REV__nc|ENSG00000055118|Q12809-5|KCNH2 REV__nc|ENSG00000055118|Q12809-5|KCNH2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 309.81661 926.428001 -0.78373 -0.00024281 1.3631 0.00042231 0.57937 0.0001795 309.8169829074457 79.558 1.0163 75.882 75.442 76.458 -3.676 0.098271 0.00037551 NaN 0.029283 65 28 3 NaN NaN NaN NaN 0 NaN NaN 0 7696700 + 26256 14112 17357 17363 -0.038156050481802595 LGAWGWPS 8 Unmodified _LGAWGWPS_ 0 0 0 REV__ENST00000593044.5_1_17:76122262-76122925:-|nuORF REV__ENST00000593044.5_1_17:76122262-76122925:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2169189453125 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 114.64 1 114.64 114.14 115.14 0 0 0 0 0.21486 1 22551 22551 10.183 0 1 + 26257 23268 17358 17364 25938 25938 -0.023224249912459527 LGCHSEDCDCE 11 Unmodified _LGCHSEDCDCE_ 0 0 0 ENSG00000166930|ENST00000300190|MS4A5 ENSG00000166930|ENST00000300190|MS4A5 ENSG00000166930|ENST00000300190|MS4A5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 605.5237426757812 2 605.694106 1209.37366 NaN NaN NaN NaN NaN NaN NaN 172.77 1 167.89 167.39 168.39 -4.881 0 0 0 0.23698 1 34315 34315 1.3295 0.87119 1 26258 5767 17359 17365 25939 25939 -0.22265353044190306 LGCKSTPKMT 10 Unmodified _LGCKSTPKMT_ 0 0 0 ENSG00000178338|ENST00000322434|ZNF354B ENSG00000178338|ENST00000322434|ZNF354B ENSG00000178338|ENST00000322434|ZNF354B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2760009765625 2 533.275195 1064.53584 0.12735 6.7912E-05 -1.6417 -0.00087545 -1.5143 -0.00080754 533.7749013826541 77.57 1.0485 73.911 73.538 74.586 -3.6588 57 29 3 0 0 0 0.51199 1 14742 14742 24.021 4.6586 1 7376800 26259 6575 17360 17366 25940 25940 0.006150234909000574 LGCLPGCL 8 Unmodified _LGCLPGCL_ 0 0 0 REV__HHATL|p.A107Gfs*64|1|0.07|ENSG00000010282|chr3:42698871-42698872|-/C|frameshift_variant REV__HHATL|p.A107Gfs*64|1|0.07|ENSG00000010282|chr3:42698871-42698872|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.71405029296875 2 388.195685 774.376817 NaN NaN NaN NaN NaN NaN NaN 93.979 1 93.979 93.479 94.479 0 0 0 0 0.21486 1 18398 18398 2.8892 0 1 + 26260 23632 17361 17367 25941 25941 -0.019396453465788 LGCQGCHHC 9 Unmodified _LGCQGCHHC_ 0 0 0 REV__CNGA3|p.L386Ffs*33|1|0.08|ENSG00000144191|chr2:98396325-98396326|-/T|frameshift_variant REV__CNGA3|p.L386Ffs*33|1|0.08|ENSG00000144191|chr2:98396325-98396326|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7442321777344 2 479.178032 956.341511 NaN NaN NaN NaN NaN NaN NaN 68.148 1 65.04 64.54 65.54 -3.1086 0 0 0 0.23508 1 13229 13229 8.5933 0.68312 1 + 26261 13456 17362 17368 25942 25942 -0.13840631146035776 LGDILVIS 8 Unmodified _LGDILVIS_ 0 0 0 EYS|p.F206Vfs*10|1|0.22|ENSG00000188107|chr6:65494795-65494796|-/C|frameshift_variant;EYS|p.K220Nfs*37|1|0.25|ENSG00000188107|chr6:65494751-65494751|T/-|frameshift_variant;nc|ENSG00000188107|Q5T1H1-2|EYS;nc|ENSG00000188107|Q5T1H1-4|EYS;EYS|p.N692Mfs*37|1|0.42|ENSG00000188107|chr6:65057676-65057676|T/-|frameshift_variant;EYS|p.C952Lfs*2|1|0.27|ENSG00000188107|chr6:64886834-64886835|-/A|frameshift_variant;EYS|p.N1413Tfs*15|1|0.21|ENSG00000188107|chr6:64591629-64591629|T/-|frameshift_variant;EYS|p.E1830Rfs*16|1|0.31|ENSG00000188107|chr6:64590379-64590380|-/T|frameshift_variant;EYS|p.P1875Lfs*4|1|0.23|ENSG00000188107|chr6:64590243-64590243|G/-|frameshift_variant;EYS|p.G2248Wfs*10|1|0.08|ENSG00000188107|chr6:63999167-63999168|-/A|frameshift_variant;EYS|p.F2463Rfs*16|1|0.05|ENSG00000188107|chr6:63806214-63806215|-/AAGACCT|frameshift_variant;ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS EYS|p.F206Vfs*10|1|0.22|ENSG00000188107|chr6:65494795-65494796|-/C|frameshift_variant EYS|p.F206Vfs*10|1|0.22|ENSG00000188107|chr6:65494795-65494796|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2543029785156 2 415.255111 828.49567 NaN NaN NaN NaN NaN NaN NaN 92.184 1 88.09 87.59 88.59 -4.0946 0 0 0 0.22934 1 17562 17562 1.7423 0 1 26262 7150 17363 17369 25943 25943 0.07456168154271836 LGDLLNNGDY 10 Unmodified _LGDLLNNGDY_ 0 0 0 REV__ENST00000477791.5_1_2:47134810-47142912:-|nuORF REV__ENST00000477791.5_1_2:47134810-47142912:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.76953125 2 547.261653 1092.50875 0.23447 0.00012832 0.46523 0.0002546 0.69971 0.00038292 547.2617130362157 60.567 0.28513 57.343 57.171 57.456 -3.2237 15 7 3 0 0 0 0.65405 1 11317 11317 15.847 0.5987 1 1276600 + 26263 22124 17364 17370 25944 25944 -0.03380045524295383 LGDMNFLR 8 Unmodified _LGDMNFLR_ 0 0 0 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 483.76031494140625 2 483.247295 964.480036 0.24214 0.00011701 0.30515 0.00014746 0.54729 0.00026447 483.24734807508094 159.37 0.74869 154.1 153.79 154.54 -5.2748 36 20 2 0 0 0 8448 1 30983 30983 1.7423 1.0609 1 1937500 26264 861 17365 17371 25945 25945 -0.0036244163441097044 LGDMNFLR 8 Unmodified _LGDMNFLR_ 0 0 0 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 483.247295 964.480036 0.048514 2.3444E-05 0.73374 0.00035458 0.78225 0.00037802 483.2476731602349 153.95 0.35303 153.95 153.76 154.11 0 -0.053401 0.00065017 NaN 1.7423 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1774300 26265 861 17365 17371 -0.0036244163441097044 LGDMNFLR 8 Unmodified _LGDMNFLR_ 0 0 0 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 483.247295 964.480036 0.23197 0.0001121 -0.32481 -0.00015697 -0.092842 -4.4866E-05 483.2471471040506 158.65 0.71156 153.85 153.58 154.3 -4.7952 -0.14996 -0.00037291 NaN 1.7423 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2141200 26266 861 17365 17371 -0.0036244163441097044 LGDMNFLR 8 Unmodified _LGDMNFLR_ 0 0 0 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 483.247295 964.480036 0.24214 0.00011701 0.30515 0.00014746 0.54729 0.00026447 483.24734807508094 159.37 0.74869 154.1 153.79 154.54 -5.2748 0.096425 0.00023594 NaN 1.7423 36 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1937500 26267 861 17365 17371 -0.0036244163441097044 LGDMNFLR 8 Unmodified _LGDMNFLR_ 0 0 0 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 483.247295 964.480036 0.31137 0.00015047 -0.39929 -0.00019296 -0.087924 -4.2489E-05 483.24713323528863 159.38 0.75476 154.11 153.69 154.45 -5.2712 0.10694 -0.0004449 NaN 1.7423 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2364800 26268 861 17365 17371 -0.0036244163441097044 LGDSRSIPD 9 Unmodified _LGDSRSIPD_ 0 0 0 ENST00000357877.6_1_2:74906957-74907104:+|nuORF ENST00000357877.6_1_2:74906957-74907104:+|nuORF ENST00000357877.6_1_2:74906957-74907104:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2355041503906 2 480.243264 958.471974 -0.35275 -0.0001694 0.24125 0.00011586 -0.1115 -5.3546E-05 480.2434230474601 37.482 1.0741 35.014 34.331 35.405 -2.4688 72 30 3 0 0 0 0.44262 1 6841 6841 23.148 6.2061 1 4926600 26269 8983 17366 17372 25946 25946 -0.008922973501853448 LGDSRSIPD 9 Unmodified _LGDSRSIPD_ 0 0 0 ENST00000357877.6_1_2:74906957-74907104:+|nuORF ENST00000357877.6_1_2:74906957-74907104:+|nuORF ENST00000357877.6_1_2:74906957-74907104:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2360534667969 2 480.243264 958.471974 0.10569 5.0758E-05 -0.23092 -0.0001109 -0.12523 -6.014E-05 480.24322491720653 37.47 1.0936 35.122 34.413 35.506 -2.3479 66 31 3 0 0 0 0.48644 1 6547 6547 20.454 2.3186 1 3888700 26270 8983 17366 17372 25947 25947 -0.008922973501853448 LGDTEWDYVY 10 Unmodified _LGDTEWDYVY_ 0 0 0 REV__sp|P09722|US22_HCMVAEarlynuclearproteinHWLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US22PE=3SV=2 REV__sp|P09722|US22_HCMVAEarlynuclearproteinHWLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US22PE=3SV=2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.751708984375 2 630.774593 1259.53463 NaN NaN NaN NaN NaN NaN NaN 77.988 1 77.988 77.488 78.488 0 0 0 0 0.22588 1 15173 15173 7.2892 0.56607 1 + 26271 24687 17367 17373 25948 25948 -0.08475196072663493 LGDTEWDYVY 10 Unmodified _LGDTEWDYVY_ 0 0 0 REV__sp|P09722|US22_HCMVAEarlynuclearproteinHWLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US22PE=3SV=2 REV__sp|P09722|US22_HCMVAEarlynuclearproteinHWLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US22PE=3SV=2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7796630859375 2 630.774593 1259.53463 NaN NaN NaN NaN NaN NaN NaN 78.01 1 78.01 77.51 78.51 0 0 0 0 0.22588 1 15178 15178 7.2892 0.56607 1 + 26272 24687 17367 17373 25949 25949 -0.08475196072663493 LGDVTNTGKG 10 Unmodified _LGDVTNTGKG_ 0 0 0 REV__MSH5|p.A688Tfs*25|1|0.07|ENSG00000204410|chr6:31761495-31761496|-/ACACA|frameshift_variant REV__MSH5|p.A688Tfs*25|1|0.07|ENSG00000204410|chr6:31761495-31761496|-/ACACA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78680419921875 2 481.251089 960.487624 0.00093799 4.5141E-07 0.12975 6.244E-05 0.13068 6.2891E-05 481.25114282534514 147.47 0.41809 147.47 147.26 147.68 0 19 11 2 0 0 0 0.59928 1 29529 29529 19.257 7.6167 1 2012400 + 26273 19533 17368 17374 25950 25950 0.005799891668630153 LGEEDPFIF 9 Unmodified _LGEEDPFIF_ 0 0 0 ENST00000330636.8_2_6:5216929-5261090:-|nuORF ENST00000330636.8_2_6:5216929-5261090:-|nuORF ENST00000330636.8_2_6:5216929-5261090:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2718505859375 2 533.758215 1065.50188 0.24938 0.00013311 -1.7127 -0.00091418 -1.4634 -0.00078108 534.2566918787084 158.25 0.21306 153.45 153.3 153.51 -4.7952 6 5 2 0 0 0 0.85699 1 31460 31460 5.2307 3.1709 1 941040 26274 8769 17369 17375 25951 25951 -0.0282535840485707 LGEESSLS 8 Unmodified _LGEESSLS_ 0 0 0 REV__nc|ENSG00000175121|Q8TCV5|WFDC5 REV__nc|ENSG00000175121|Q8TCV5|WFDC5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.11492919921875 2 411.19799 820.381428 NaN NaN NaN NaN NaN NaN NaN 41.459 1 38.825 38.325 39.325 -2.6348 0 0 0 0.21486 1 7742 7742 10.183 0 1 + 26275 24181 17370 17376 25952 25952 -0.03594766398464344 LGEGRCLAP 9 Unmodified _LGEGRCLAP_ 0 0 0 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2392272949219 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 126.06 1 121.46 120.96 121.96 -4.5984 0 0 0 0.18705 1 24853 24853 25.399 0.72543 1 26276 12402 17371 17377 25953 25953 0.003732718485252917 LGETFPRSLKY 11 Unmodified _LGETFPRSLKY_ 0 0 0 ENST00000578955.1_1_18:19057140-19088617:+|nuORF;nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L ENST00000578955.1_1_18:19057140-19088617:+|nuORF ENST00000578955.1_1_18:19057140-19088617:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.217041015625 3 437.574955 1309.70304 NaN NaN NaN NaN NaN NaN NaN 119.33 1 114.68 114.18 115.18 -4.645 0 0 0 0.2341 1 22899 22899 5.0475 0 1 26277 4369 17372 17378 25954 25954 0.06057330631665536 LGEVLLLSA 9 Unmodified _LGEVLLLSA_ 0 0 0 REV__nc|ENSG00000167984|Q7RTR2-3|NLRC3 REV__nc|ENSG00000167984|Q7RTR2-3|NLRC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22491455078125 2 457.781493 913.548434 NaN NaN NaN NaN NaN NaN NaN 161.32 1 156.09 155.59 156.59 -5.2299 0 0 0 0.19699 1 31331 31331 6.4869 4.795 1 + 26278 17982 17373 17379 25955 25955 0.08820126217096913 LGEVTEDPP 9 Unmodified _LGEVTEDPP_ 0 0 0 REV__MIDN|p.R261Afs*13|1|0.32|ENSG00000167470|chr19:1254981-1254981|C/-|frameshift_variant REV__MIDN|p.R261Afs*13|1|0.32|ENSG00000167470|chr19:1254981-1254981|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7336120605469 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 31.794 1 29.646 29.146 30.146 -2.1483 0 0 0 0.19634 1 5489 5489 0.073264 0 1 + 26279 17927 17374 17380 25956 25956 -0.029665218186096354 LGFAFLHVLY 10 Unmodified _LGFAFLHVLY_ 0 0 0 ENSG00000127954|ENST00000380079|STEAP4 ENSG00000127954|ENST00000380079|STEAP4 ENSG00000127954|ENST00000380079|STEAP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.27587890625 2 590.331685 1178.64882 NaN NaN NaN NaN NaN NaN NaN 137.25 1 132.61 132.11 133.11 -4.6413 0 0 0 0.22552 1 27086 27086 18.135 10.225 1 26280 3499 17375 17381 25957 25957 0.0666378327075563 LGFFLWLKK 9 Unmodified _LGFFLWLKK_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3276977539062 2 576.35242 1150.69029 NaN NaN NaN NaN NaN NaN NaN 164.12 1 159.08 158.58 159.58 -5.0446 0 0 0 0.23508 1 31981 31981 7.2892 1.9923 1 26281 2356 17376 17382 25958 25958 0.12096964030070012 LGFIIALIF 9 Unmodified _LGFIIALIF_ 0 0 0 tr|U7SVI5|U7SVI5_FUSNUMalatepermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01239PE=3SV=1 tr|U7SVI5|U7SVI5_FUSNUMalatepermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01239PE=3SV=1 tr|U7SVI5|U7SVI5_FUSNUMalatepermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01239PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.482666015625 3 336.21604 1005.62629 NaN NaN NaN NaN NaN NaN NaN 76.786 1 73.019 72.519 73.519 -3.7664 0 0 0 0.19624 1 14546 14546 0.073264 0 1 26282 26237 17377 17383 25959 25959 0.12370183873133556 LGFKKLGPV 9 Unmodified _LGFKKLGPV_ 0 0 0 ENST00000517489.1_1_8:99057319-99057484:-|nuORF ENST00000517489.1_1_8:99057319-99057484:-|nuORF ENST00000517489.1_1_8:99057319-99057484:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.5102844238281 3 320.207656 957.601138 NaN NaN NaN NaN NaN NaN NaN 30.341 1 28.267 27.767 28.767 -2.0743 0 0 0 0.19638 1 5193 5193 0.40827 0.39999 1 26283 10795 17378 17384 25960 25960 0.12064129070574836 LGFLEAARA 9 Unmodified _LGFLEAARA_ 0 0 0 REV__ENSG00000187024|ENST00000543175|PTRH1 REV__ENSG00000187024|ENST00000543175|PTRH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.15478515625 3 316.515148 946.523616 -0.10004 -3.1663E-05 -0.22676 -7.1773E-05 -0.3268 -0.00010344 316.5150329800646 22.704 0.60235 21.251 20.838 21.44 -1.4535 40 16 3 0 0 0 0.81492 1 3579 3579 1.0715 0 1 3538600 + 26284 19072 17379 17385 25961 25961 0.04821491134362077 LGFLEAARA 9 Unmodified _LGFLEAARA_ 0 0 0 REV__ENSG00000187024|ENST00000543175|PTRH1 REV__ENSG00000187024|ENST00000543175|PTRH1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 316.515148 946.523616 -0.49398 -0.00015635 0.17826 5.6422E-05 -0.31572 -9.993E-05 316.51516514330115 21.168 0.61079 21.168 20.816 21.427 0 -0.048229 0.00036106 NaN 1.0715 47 17 4 NaN NaN NaN NaN 0 NaN NaN 0 4607400 + 26285 19072 17379 17385 0.04821491134362077 LGFLEAARA 9 Unmodified _LGFLEAARA_ 0 0 0 REV__ENSG00000187024|ENST00000543175|PTRH1 REV__ENSG00000187024|ENST00000543175|PTRH1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 316.515148 946.523616 0.41605 0.00013168 -0.64109 -0.00020292 -0.22505 -7.1231E-05 316.5149028465074 22.784 0.58194 21.23 20.859 21.441 -1.5532 0.01392 -0.00041695 NaN 1.0715 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3035400 + 26286 19072 17379 17385 0.04821491134362077 LGFLEAARA 9 Unmodified _LGFLEAARA_ 0 0 0 REV__ENSG00000187024|ENST00000543175|PTRH1 REV__ENSG00000187024|ENST00000543175|PTRH1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 316.515148 946.523616 -0.10004 -3.1663E-05 -0.22676 -7.1773E-05 -0.3268 -0.00010344 316.5150329800646 22.704 0.60235 21.251 20.838 21.44 -1.4535 0.034309 -2.3524E-05 NaN 1.0715 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3538600 + 26287 19072 17379 17385 0.04821491134362077 LGFLPSQRAL 10 Unmodified _LGFLPSQRAL_ 0 0 0 ENST00000534978.1_1_7:36193762-36193992:+|nuORF;ENST00000242108.8_1_7:36193818-36193992:+|nuORF ENST00000534978.1_1_7:36193762-36193992:+|nuORF ENST00000534978.1_1_7:36193762-36193992:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.5368957519531 3 367.885353 1100.63423 -0.4526 -0.00016651 0.27735 0.00010203 -0.17525 -6.4473E-05 367.88539948917145 40.855 1.2193 38.221 37.798 39.017 -2.6348 63 34 2 0 0 0 1.1313 1 7777 7777 0.063865 0.063865 1 1773700 26288 8189 17380 17386 25962 25962 0.08793711122621062 LGFLVLNVGY 10 Unmodified _LGFLVLNVGY_ 0 0 0 REV__ENSG00000149488|ENST00000358864|TMC2 REV__ENSG00000149488|ENST00000358864|TMC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 365.54486083984375 3 365.546337 1093.61718 NaN NaN NaN NaN NaN NaN NaN 61.679 1 58.439 57.939 58.939 -3.2395 0 0 0 2.8426 1 11550 11550 0.20733 0.13406 1 + 26289 17008 17381 17387 25963 25963 0.07411790516812289 LGFMILLR 8 Unmodified _LGFMILLR_ 0 0 0 CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7882995605469 2 481.796423 961.578294 NaN NaN NaN NaN NaN NaN NaN 47.318 1 44.376 43.876 44.876 -2.9421 0 0 0 0.21486 1 8623 8623 5.7604 0 1 26290 456 17382 17388 25964 25964 0.09596786681447611 LGFPHTMQEIH 11 Unmodified _LGFPHTMQEIH_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2184143066406 3 437.216774 1308.62849 -0.08906 -3.8938E-05 0.41502 0.00018145 0.32596 0.00014252 437.5507578180542 41.59 1.4409 38.939 38.166 39.607 -2.651 71 40 5 0 0 0 0.77537 2 7500 7500;7542 6.6235 3.0308 1 2971600 + 26291 14429 17383 17389 25965;25966 25965 -0.013477554513656287 LGFVKDSY 8 Unmodified _LGFVKDSY_ 0 0 0 nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;WDFY4|p.E2278Kfs*20|2|0.3|ENSG00000128815|chr10:48873577-48873577|G/-|frameshift_variant;nc|ENSG00000128815|Q6ZS81-2|WDFY4;WDFY4|p.L901Sfs*22|1|0.22|ENSG00000128815|chr10:48774601-48774601|C/-|frameshift_variant;WDFY4|p.R948Tfs*54|1|0.33|ENSG00000128815|chr10:48775775-48775776|-/CA|frameshift_variant;nc|ENSG00000128815|Q6ZS81-3|WDFY4;WDFY4|p.Q1607Sfs*14|1|0.47|ENSG00000128815|chr10:48807934-48807934|C/-|frameshift_variant nc|ENSG00000128815|Q6ZS81-5|WDFY4 nc|ENSG00000128815|Q6ZS81-5|WDFY4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 76.092 1 76.092 75.592 76.592 0 0 0 0 0.21486 1 14786 14786 3.9444 0 1 26292 3542 17384 17390 25967 25967 0.00354693631857117 LGFVKDSY 8 Unmodified _LGFVKDSY_ 0 0 0 nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;WDFY4|p.E2278Kfs*20|2|0.3|ENSG00000128815|chr10:48873577-48873577|G/-|frameshift_variant;nc|ENSG00000128815|Q6ZS81-2|WDFY4;WDFY4|p.L901Sfs*22|1|0.22|ENSG00000128815|chr10:48774601-48774601|C/-|frameshift_variant;WDFY4|p.R948Tfs*54|1|0.33|ENSG00000128815|chr10:48775775-48775776|-/CA|frameshift_variant;nc|ENSG00000128815|Q6ZS81-3|WDFY4;WDFY4|p.Q1607Sfs*14|1|0.47|ENSG00000128815|chr10:48807934-48807934|C/-|frameshift_variant nc|ENSG00000128815|Q6ZS81-5|WDFY4 nc|ENSG00000128815|Q6ZS81-5|WDFY4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 79.078 1 75.568 75.068 76.068 -3.5102 0 0 0 0.21486 1 15441 15441 7.2892 0 1 26293 3542 17384 17390 25968 25968 0.00354693631857117 LGFYVHVK 8 Unmodified _LGFYVHVK_ 0 0 0 CCNL2|p.C190Y|1|0.07|ENSG00000221978|chr1:1395419-1395419|C/T|missense_variant CCNL2|p.C190Y|1|0.07|ENSG00000221978|chr1:1395419-1395419|C/T|missense_variant CCNL2|p.C190Y|1|0.07|ENSG00000221978|chr1:1395419-1395419|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77789306640625 2 481.776545 961.538538 NaN NaN NaN NaN NaN NaN NaN 159.8 1 154.55 154.05 155.05 -5.2526 0 0 0 0.22834 1 31007 31007 0.68139 0.55853 1 26294 432 17385 17391 25969 25969 0.056229830023767136 LGGAKRNAK 9 Unmodified _LGGAKRNAK_ 0 0 0 ENST00000389048.7_2_2:30143734-30144202:-|nuORF ENST00000389048.7_2_2:30143734-30144202:-|nuORF ENST00000389048.7_2_2:30143734-30144202:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2254333496094 2 457.780151 913.545748 0.38015 0.00017403 0.38096 0.0001744 0.76112 0.00034843 457.78005816198066 38.719 0.39265 38.719 38.531 38.924 0 17 10 2 0 0 0 0.70873 1 7166 7166 7.9102 0 1 876620 26295 9352 17386 17392 25970 25970 0.08551715602800414 LGGAWCPGL 9 Unmodified _LGGAWCPGL_ 0 0 0 REV__ENSG00000005381|ENST00000225275|MPO REV__ENSG00000005381|ENST00000225275|MPO MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21673583984375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 126.82 1 122.12 121.62 122.62 -4.6998 0 0 0 0.23048 1 24397 24397 14.582 3.4672 1 + 26296 13857 17387 17393 25971 25971 -0.019854982088986617 LGGEDKMIT 9 Unmodified _LGGEDKMIT_ 0 0 0 ENST00000512448.1_1_4:39201144-39207357:+|nuORF;WDR19|p.L214Ffs*2|1|0.19|ENSG00000157796|chr4:39205183-39205184|-/TT|frameshift_variant;WDR19|p.L214Ffs*5|2|0.34|ENSG00000157796|chr4:39205183-39205184|-/T|frameshift_variant;nc|ENSG00000157796|Q8NEZ3-2|WDR19;WDR19|p.N1166Mfs*5|1|0.21|ENSG00000157796|chr4:39272989-39272989|A/-|frameshift_variant;ENSG00000157796|ENST00000399820|WDR19 ENST00000512448.1_1_4:39201144-39207357:+|nuORF ENST00000512448.1_1_4:39201144-39207357:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7652282714844 2 482.244418 962.474282 0.012199 5.8827E-06 4.0995 0.0019769 4.1117 0.0019828 482.2470527622908 91.619 0.58515 87.694 87.406 87.991 -3.9251 20 16 2 0 0 0 0.77732 1 17914 17914 12.532 7.7755 1 661240 26297 5140 17388 17394 25972 25972 -0.008455849367464907 LGGGGGCC 8 Unmodified _LGGGGGCC_ 0 0 0 ENST00000431489.5_1_2:62932928-62934072:+|nuORF ENST00000431489.5_1_2:62932928-62934072:+|nuORF ENST00000431489.5_1_2:62932928-62934072:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.763916015625 1 623.227593 622.220316 0.38505 0.00023997 2.7092 0.0016885 3.0943 0.0019284 623.2283454716284 153.6 0.20406 148.34 148.16 148.37 -5.2669 6 5 2 0 0 0 1.0244 1 29781 29781 0.79363 0 1 751820 26298 9785 17389 17395 25973 25973 -0.10590510517045004 LGGGGGQG 8 Unmodified _LGGGGGQG_ 0 0 0 REV__ENST00000469086.5_1_22:39136824-39138467:-|nuORF REV__ENST00000469086.5_1_22:39136824-39138467:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3016967773438 1 602.289265 601.281989 0.4258 0.00025646 -0.25658 -0.00015454 0.16922 0.00010192 602.287973616261 139.99 0.10225 135.04 134.95 135.05 -4.952 4 2 2 0 0 0 0.97994 1 26927 26927 5.7604 0 1 1702800 + 26299 14680 17390 17396 25974 25974 -0.03460119501903591 LGGHFGVY 8 Unmodified _LGGHFGVY_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2521667480469 2 425.216321 848.418088 NaN NaN NaN NaN NaN NaN NaN 126.96 1 122.34 121.84 122.84 -4.6172 0 0 0 0.21486 1 25035 25035 11.114 4.3913 1 + 26300 18377 17391 17397 25975 25975 -0.012184249912365885 LGGHFGVY 8 Unmodified _LGGHFGVY_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24591064453125 2 425.216321 848.418088 NaN NaN NaN NaN NaN NaN NaN 104.44 1 100.09 99.595 100.59 -4.346 0 0 0 0.23711 1 20009 20009 0.12286 0.11459 1 + 26301 18377 17391 17397 25976 25976 -0.012184249912365885 LGGHFGVY 8 Unmodified _LGGHFGVY_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2522277832031 2 425.216321 848.418088 NaN NaN NaN NaN NaN NaN NaN 129.96 1 125.13 124.63 125.63 -4.8355 0 0 0 0.21486 1 24953 24953 6.3541 3.4649 1 + 26302 18377 17391 17397 25977 25977 -0.012184249912365885 LGGHFGVY 8 Unmodified _LGGHFGVY_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25091552734375 2 425.216321 848.418088 NaN NaN NaN NaN NaN NaN NaN 135.29 1 130.39 129.89 130.89 -4.8951 0 0 0 0.2396 1 25987 25987 0.0082765 0 1 + 26303 18377 17391 17397 25978 25978 -0.012184249912365885 LGGHGAKLRW 10 Unmodified _LGGHGAKLRW_ 0 0 0 REV__ENST00000497891.1_1_7:143098260-143104736:-|nuORF REV__ENST00000497891.1_1_7:143098260-143104736:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7691650390625 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 159.44 1 154.16 153.66 154.66 -5.2712 0 0 0 0.22588 1 30936 30936 10.074 0.6908 1 + 26304 22406 17392 17398 25979 25979 0.07143379902504421 LGGHGTIQQLG 11 Unmodified _LGGHGTIQQLG_ 0 0 0 REV__ENSG00000184752|ENST00000327772|NDUFA12 REV__ENSG00000184752|ENST00000327772|NDUFA12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.261474609375 2 540.793455 1079.57236 -0.016252 -8.789E-06 0.66459 0.00035941 0.64834 0.00035062 540.7936998421679 60.832 0.49097 60.832 60.522 61.013 0 21 13 2 0 0 0 0.59903 1 11686 11686 18.146 0.011366 1 1679300 + 26305 18914 17393 17399 25980 25980 0.035753597034727136 LGGHLGAH 8 Unmodified _LGGHLGAH_ 0 0 0 REV__ENST00000465651.1_1_1:205561218-205568281:+|nuORF REV__ENST00000465651.1_1_1:205561218-205568281:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.211181640625 2 381.206287 760.398021 NaN NaN NaN NaN NaN NaN NaN 15.233 1 13.88 13.38 14.38 -1.3534 0 0 0 0.2396 1 2084 2084 0.30703 0 1 + 26306 21953 17394 17400 25981 25981 0.008238240688001497 LGGITILTK 9 Unmodified _LGGITILTK_ 0 0 0 REV__ENSG00000070729|ENST00000251102|CNGB1 REV__ENSG00000070729|ENST00000251102|CNGB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.238037109375 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 89.407 1 85.547 85.047 86.047 -3.8595 0 0 0 0.23508 1 17497 17497 9.3474 0 1 + 26307 14263 17395 17401 25982 25982 0.11936118971027554 LGGITILTK 9 Unmodified _LGGITILTK_ 0 0 0 REV__ENSG00000070729|ENST00000251102|CNGB1 REV__ENSG00000070729|ENST00000251102|CNGB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2275085449219 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 89.642 1 85.598 85.098 86.098 -4.0443 0 0 0 0.1966 1 17082 17082 0.12781 0 1 + 26308 14263 17395 17401 25983 25983 0.11936118971027554 LGGKRFPV 8 Unmodified _LGGKRFPV_ 0 0 0 REV__ENST00000556036.5_2_14:45605458-45606311:+|nuORF REV__ENST00000556036.5_2_14:45605458-45606311:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2160949707031 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 118.94 1 114.44 113.94 114.94 -4.502 0 0 0 0.21486 1 23452 23452 6.3541 0 1 + 26309 22992 17396 17402 25984 25984 0.08186116205172311 LGGLGERGAWA 11 Unmodified _LGGLGERGAWA_ 0 0 0 REV__ENST00000491818.5_1_3:179040886-179043089:+|nuORF REV__ENST00000491818.5_1_3:179040886-179043089:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7964477539062 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 161.66 1 156.51 156.01 157.01 -5.1438 0 0 0 0.2268 1 31400 31400 10.824 2.2306 1 + 26310 22322 17397 17403 25985 25985 0.02243377049035189 LGGLLLLPVVT 11 Unmodified _LGGLLLLPVVT_ 0 0 0 REV__SDF2|p.A2T|1|0.38|ENSG00000132581|chr17:28661873-28661873|C/T|missense_variant REV__SDF2|p.A2T|1|0.38|ENSG00000132581|chr17:28661873-28661873|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7698974609375 2 547.862818 1093.71108 0.33076 0.00018121 -2.6876 -0.0014724 -2.3568 -0.0012912 547.8623601470363 139.38 0.17319 134.53 134.39 134.56 -4.8492 6 4 2 0 0 0 0.96084 1 26866 26866 1.3295 0 1 1833300 + 26311 24599 17398 17404 25986 25986 0.16797509619073026 LGGNQLQSI 9 Unmodified _LGGNQLQSI_ 0 0 0 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.255615234375 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 166.63 1 161.68 161.18 162.18 -4.9484 0 0 0 0.22251 1 32674 32674 16.942 0 1 26312 5426 17399 17405 25987 25987 0.03068596892092046 LGGPEMRN 8 Unmodified _LGGPEMRN_ 0 0 0 REV__ENSG00000188505|ENST00000339852|NCCRP1 REV__ENSG00000188505|ENST00000339852|NCCRP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21563720703125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 121.89 1 121.89 121.39 122.39 0 0 0 0 0.21486 1 24029 24029 5.7604 0.52976 1 + 26313 19150 17400 17406 25988 25988 -0.023875877025943737 LGGRKKGPNLY 11 Unmodified _LGGRKKGPNLY_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2732543945312 2 601.853847 1201.69314 NaN NaN NaN NaN NaN NaN NaN 76.626 1 76.626 76.126 77.126 0 0 0 0 0.23594 1 14891 14891 3.5965 0 1 + 26314 19204 17401 17407 25989 25989 0.1003618741694936 LGGRKKGPNLY 11 Unmodified _LGGRKKGPNLY_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2763671875 2 601.853847 1201.69314 0.29431 0.00017713 1.4032 0.00084452 1.6975 0.0010217 601.8569310827766 135.14 0.17651 130.3 130.2 130.38 -4.8307 6 4 2 0 0 0 0.96063 1 26006 26006 1.4819 0.28856 1 739310 + 26315 19204 17401 17407 25990 25990 0.1003618741694936 LGGRSRSRAWV 11 Unmodified _LGGRSRSRAWV_ 0 0 0 ENST00000361762.3_2_4:30722410-30722659:+|nuORF ENST00000361762.3_2_4:30722410-30722659:+|nuORF ENST00000361762.3_2_4:30722410-30722659:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7587890625 2 622.85217 1243.68979 0.39838 0.00024813 -2.215 -0.0013796 -1.8166 -0.0011315 623.3528374119655 132.11 0.098297 132.11 132.06 132.16 0 4 2 2 0 0 0 0.75285 1 26106 26106 8.1555 0 1 2127700 26316 9035 17402 17408 25991 25991 0.07768937362902761 LGGSCACSQH 10 Unmodified _LGGSCACSQH_ 0 0 0 ENST00000380071.7_1_13:34404114-34404150:+|nuORF ENST00000380071.7_1_13:34404114-34404150:+|nuORF ENST00000380071.7_1_13:34404114-34404150:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.236572265625 2 481.694569 961.374585 0.31807 0.00015321 0.33177 0.00015981 0.64983 0.00031302 481.6946191557735 101.17 0.53169 97.182 96.925 97.456 -3.9895 24 14 2 0 0 0 0.86261 1 19399 19399 3.5965 3.0717 1 1422000 26317 9309 17403 17409 25992 25992 -0.10764725822343735 LGGSGLCLAHF 11 Unmodified _LGGSGLCLAHF_ 0 0 0 REV__ENSG00000101850|ENST00000467482|GPR143 REV__ENSG00000101850|ENST00000467482|GPR143 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 538.1990966796875 2 537.773677 1073.5328 0.32987 0.00017739 -3.2143 -0.0017285 -2.8844 -0.0015512 538.2733319759775 139.82 0.56201 134.97 134.63 135.19 -4.8492 23 15 2 0 0 0 0.91024 1 26898 26898 6.2058 0.97511 1 933680 + 26318 14801 17404 17410 25993 25993 -0.0010248357161799504 LGGSLLFGSL 10 Unmodified _LGGSLLFGSL_ 0 0 0 ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7843322753906 2 482.279118 962.543683 -0.4514 -0.0002177 0.64679 0.00031193 0.19539 9.4233E-05 482.27934596956453 108.12 0.83466 103.8 103.34 104.18 -4.32 69 23 4 0 0 0 0.37929 1 21251 21251 37.974 0 1 15498000 26319 6446 17405 17411 25994 25994 0.06091242074330694 LGGSNWGCY 9 Unmodified _LGGSNWGCY_ 0 0 0 REV__ENST00000329875.12_1_17:79890274-79890556:-|nuORF REV__ENST00000329875.12_1_17:79890274-79890556:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7237548828125 2 478.700177 955.385802 0.13552 6.4872E-05 -1.5345 -0.00073456 -1.399 -0.00066969 478.6994750234333 75.792 1.1049 75.792 75.378 76.483 0 150 31 7 0 0 0 0.85699 1 14863 14863 5.2307 2.9279 1 142600000 + 26320 20604 17406 17412 25995 25995 -0.09367580456557789 LGGSQRPQT 9 Unmodified _LGGSQRPQT_ 0 0 0 ENST00000337929.7_1_16:27413497-27413557:+|nuORF ENST00000337929.7_1_16:27413497-27413557:+|nuORF ENST00000337929.7_1_16:27413497-27413557:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.2276611328125 3 315.170041 942.488293 NaN NaN NaN NaN NaN NaN NaN 75.346 1 75.346 74.846 75.846 0 0 0 0 0.23508 1 14632 14632 1.0715 0 1 26321 8822 17407 17413 25996 25996 0.01474828606558276 LGGSVGAKHQL 11 Unmodified _LGGSVGAKHQL_ 0 0 0 REV__ENST00000596924.1_1_19:58858141-58858360:-|nuORF REV__ENST00000596924.1_1_19:58858141-58858360:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2715454101562 2 533.803823 1065.59309 0.40942 0.00021855 -3.7504 -0.002002 -3.341 -0.0017834 533.8016507347019 120.82 0.21526 116.35 116.24 116.46 -4.467 7 5 2 0 0 0 0.65458 1 23263 23263 14.838 2.3067 1 1245300 + 26322 23385 17408 17414 25997 25997 0.06291950083118536 LGGTAGAVVLG 11 Unmodified _LGGTAGAVVLG_ 0 0 0 REV__FCRL4|p.A389V|1|0.38|ENSG00000163518|chr1:157581614-157581614|G/A|missense_variant REV__FCRL4|p.A389V|1|0.38|ENSG00000163518|chr1:157581614-157581614|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2391052246094 2 457.768917 913.523281 0.18339 8.3951E-05 0.32019 0.00014657 0.50359 0.00023053 457.76903417300576 87.626 0.52055 87.626 87.327 87.847 0 17 14 2 0 0 0 0.44356 1 17052 17052 30.637 0.41173 1 1317000 + 26323 23531 17409 17415 25998 25998 0.06306071414519465 LGGTAGAVVLG 11 Unmodified _LGGTAGAVVLG_ 0 0 0 REV__FCRL4|p.A389V|1|0.38|ENSG00000163518|chr1:157581614-157581614|G/A|missense_variant REV__FCRL4|p.A389V|1|0.38|ENSG00000163518|chr1:157581614-157581614|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 457.768917 913.523281 0.18339 8.3951E-05 0.32019 0.00014657 0.50359 0.00023053 457.76903417300576 87.626 0.52055 87.626 87.327 87.847 0 0 0 NaN 30.637 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1317000 + 26324 23531 17409 17415 0.06306071414519465 LGGVYQQMGEY 11 Unmodified _LGGVYQQMGEY_ 0 0 0 TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant;TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant;ENSG00000100154|ENST00000397906|TTC28;TTC28|p.V1305Wfs*29|1|0.31|ENSG00000100154|chr22:28094099-28094099|C/-|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7818603515625 2 622.784438 1243.55432 NaN NaN NaN NaN NaN NaN NaN 120.68 1 116.15 115.65 116.65 -4.5221 0 0 0 0.23594 1 23792 23792 3.5965 0.31518 1 26325 1934 17410 17416 25999 25999 -0.05771143333549844 LGGWGAGAQVQ 11 Unmodified _LGGWGAGAQVQ_ 0 0 0 REV__TSPYL5|p.R137Afs*27|1|0.16|ENSG00000180543|chr8:97277436-97277436|G/-|frameshift_variant REV__TSPYL5|p.R137Afs*27|1|0.16|ENSG00000180543|chr8:97277436-97277436|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2676391601562 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 22.153 1 20.678 20.178 21.178 -1.4742 0 0 0 0.22632 1 3774 3774 0.58532 0.46245 1 + 26326 18695 17411 17417 26000 26000 3.401640651645721E-05 LGGWWPTL 8 Unmodified _LGGWWPTL_ 0 0 0 ENST00000528121.5_1_10:77056170-77056284:+|nuORF ENST00000528121.5_1_10:77056170-77056284:+|nuORF ENST00000528121.5_1_10:77056170-77056284:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2392272949219 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 124.61 1 120.01 119.51 120.51 -4.5984 0 0 0 0.21486 1 24573 24573 11.114 1.767 1 26327 10932 17412 17418 26001 26001 0.013587210769401281 LGGYDDQNY 9 Unmodified _LGGYDDQNY_ 0 0 0 NPC1|p.C799Lfs*7|1|0.36|ENSG00000141458|chr18:23541186-23541187|-/A|frameshift_variant;ENST00000540608.5_1_18:21119776-21166285:-|nuORF;NPC1|p.G993Efs*4|1|0.22|ENSG00000141458|chr18:23538605-23538605|C/-|frameshift_variant;NPC1|p.F1207Lfs*35|1|0.33|ENSG00000141458|chr18:23533488-23533488|A/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1 NPC1|p.C799Lfs*7|1|0.36|ENSG00000141458|chr18:23541186-23541187|-/A|frameshift_variant NPC1|p.C799Lfs*7|1|0.36|ENSG00000141458|chr18:23541186-23541187|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2777709960938 2 522.717079 1043.4196 -0.48197 -0.00025194 2.4346 0.0012726 1.9526 0.0010207 522.7200028489583 63.964 0.21033 60.548 60.388 60.598 -3.4158 6 5 2 0 0 0 0.8204 1 11950 11950 4.756 0 1 471780 26328 4371 17413 17419 26002 26002 -0.100368804837899 LGGYLFSY 8 Unmodified _LGGYLFSY_ 0 0 0 REV__ENST00000393023.2_1_13:64385654-64385717:-|nuORF REV__ENST00000393023.2_1_13:64385654-64385717:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2315368652344 2 460.231636 918.448719 NaN NaN NaN NaN NaN NaN NaN 49.893 1 49.893 49.393 50.393 0 0 0 0 0.21181 1 9437 9437 15.768 0 1 + 26329 21229 17414 17420 26003 26003 -0.013766913968652261 LGHEDTTT 8 Unmodified _LGHEDTTT_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000024146 REV__CON__ENSEMBL:ENSBTAP00000024146 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21661376953125 2 437.201064 872.387576 NaN NaN NaN NaN NaN NaN NaN 95.524 1 95.524 95.024 96.024 0 0 0 0 0.21452 1 18714 18714 13.508 4.1604 1 + + 26330 13508 17415 17421 26004 26004 -0.05372248166975169 LGHHHHHHHRH 11 Unmodified _LGHHHHHHHRH_ 0 0 0 REV__ENST00000457665.5_1_22:38746838-38794807:-|nuORF REV__ENST00000457665.5_1_22:38746838-38794807:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23675537109375 3 481.236776 1440.6885 NaN NaN NaN NaN NaN NaN NaN 5.2711 1 4.2311 3.7311 4.7311 -1.04 0 0 0 0.22632 1 241 241 0 0 1 + 26331 21859 17416 17422 26005 26005 -0.014218391625945515 LGHNHVQN 8 Unmodified _LGHNHVQN_ 0 0 0 PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant;nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2 PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2327575683594 2 459.730658 917.446762 -0.06764 -3.1096E-05 0.6462 0.00029708 0.57856 0.00026598 459.7309211953234 101.22 0.6356 97.059 96.766 97.402 -4.1594 37 17 3 0 0 0 8448 1 19924 19924 3.5871 0 1 4096900 26332 1193 17417 17423 26006 26006 -0.015263073620985779 LGHNHVQN 8 Unmodified _LGHNHVQN_ 0 0 0 PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant;nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2 PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2418212890625 2 459.730658 917.446762 0.39031 0.00017944 0.40572 0.00018652 0.79603 0.00036596 459.7307574049874 101.21 0.66589 97.223 96.826 97.491 -3.9895 35 18 2 0 0 0 8448 1 19422 19422 3.5871 0 1 3127900 26333 1193 17417 17423 26007 26007 -0.015263073620985779 LGHTCPRFL 9 Unmodified _LGHTCPRFL_ 0 0 0 nc|ENSG00000158488|P15812-13|CD1E;nc|ENSG00000158488|P15812-3|CD1E;CD1E|p.L308Sfs*3|1|0.37|ENSG00000158488|chr1:158356511-158356511|C/-|frameshift_variant;nc|ENSG00000158488|P15812-4|CD1E;CD1E|p.Q332Tfs*5|1|0.16|ENSG00000158488|chr1:158356579-158356580|-/A|frameshift_variant;nc|ENSG00000158488|P15812-2|CD1E;ENSG00000158488|ENST00000368167|CD1E nc|ENSG00000158488|P15812-13|CD1E nc|ENSG00000158488|P15812-13|CD1E MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2597045898438 2 522.276386 1042.53822 0.25169 0.00013145 3.8041 0.0019868 4.0557 0.0021182 522.7801863421662 133.28 0.14053 128.47 128.38 128.52 -4.8174 5 3 2 0 0 0 0.66537 1 25656 25656 8.5933 0.68312 1 1004000 26334 442 17418 17424 26008 26008 0.018652400108749134 LGHWIALP 8 Unmodified _LGHWIALP_ 0 0 0 REV__CON__Q6T181 REV__CON__Q6T181 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7631530761719 2 453.763438 905.512323 NaN NaN NaN NaN NaN NaN NaN 14.32 1 13.147 12.647 13.647 -1.173 0 0 0 0.21486 1 1928 1928 0.79363 0 1 + + 26335 13555 17419 17425 26009 26009 0.055787138308687645 LGIKVKLIH 9 Unmodified _LGIKVKLIH_ 0 0 0 REV__CON__Q2KJC7 REV__CON__Q2KJC7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 510.78045654296875 2 510.850045 1019.68554 NaN NaN NaN NaN NaN NaN NaN 144.5 1 139.43 138.93 139.93 -5.0671 0 0 0 0.19632 1 27879 27879 0.40827 0 1 + + 26336 13537 17420 17426 26010 26010 0.1764807988732855 LGILGEDTDY 10 Unmodified _LGILGEDTDY_ 0 0 0 ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B;FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant ENSG00000112584|ENST00000476287|FAM120B ENSG00000112584|ENST00000476287|FAM120B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.767333984375 2 548.263862 1094.51317 0.16862 9.245E-05 0.25829 0.00014161 0.42691 0.00023406 548.2633986286114 132.11 0.14198 127.47 127.38 127.52 -4.6399 5 3 2 0 0 0 0.8888 1 26025 26025 11.64 3.047 1 954140 26337 2700 17421 17427 26011 26011 -0.030305811013704442 LGKAAGVC 8 Unmodified _LGKAAGVC_ 0 0 0 ENST00000273062.6_1_2:219269323-219269869:+|nuORF ENST00000273062.6_1_2:219269323-219269869:+|nuORF ENST00000273062.6_1_2:219269323-219269869:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2021179199219 2 359.699449 717.384345 -1.2194 -0.00043861 -2.5481 -0.00091654 -3.7675 -0.0013552 359.69714097783674 22.678 0.20962 20.889 20.782 20.992 -1.7886 7 5 2 0 0 0 0.83271 1 3618 3618 2.8892 0 1 97157 26338 8415 17422 17428 26012 26012 0.014348302453413453 LGKAGRRR 8 Unmodified _LGKAGRRR_ 0 0 0 REV__ENST00000556537.1_1_14:39644387-39645063:-|nuORF REV__ENST00000556537.1_1_14:39644387-39645063:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.19732666015625 3 305.198265 912.572966 NaN NaN NaN NaN NaN NaN NaN 89.364 1 89.364 88.864 89.864 0 0 0 0 0.2386 1 17451 17451 0.12286 0 1 + 26339 22996 17423 17429 26013 26013 0.11318243933828853 LGKKDPQPLAL 11 Unmodified _LGKKDPQPLAL_ 0 0 0 REV__ALPK1|p.K1021Nfs*18|1|0.21|ENSG00000073331|chr4:112435170-112435170|A/-|frameshift_variant REV__ALPK1|p.K1021Nfs*18|1|0.21|ENSG00000073331|chr4:112435170-112435170|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2767944335938 2 590.358431 1178.70231 0.56153 0.00033151 2.7478 0.0016222 3.3093 0.0019537 590.3608089161274 149.48 0.20782 144.74 144.66 144.87 -4.7323 6 5 2 0 0 0 0.76088 1 29697 29697 7.609 0.88579 1 1933300 + 26340 13014 17424 17430 26014 26014 0.12010535982608417 LGKKQFLTYY 10 Unmodified _LGKKQFLTYY_ 0 0 0 tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.753173828125 2 630.852981 1259.69141 NaN NaN NaN NaN NaN NaN NaN 77.259 1 77.259 76.759 77.759 0 0 0 0 0.22588 1 15019 15019 4.3292 0.38484 1 26341 26142 17425 17431 26015 26015 0.07195133608342985 LGKKSRLMK 9 Unmodified _LGKKSRLMK_ 0 0 0 RGS3|p.D677Gfs*6|1|0.38|ENSG00000138835|chr9:113536903-113536904|-/C|frameshift_variant;nc|ENSG00000138835|P49796-9|RGS3;nc|ENSG00000138835|P49796-5|RGS3;RGS3|p.R851Gfs*5|1|0.42|ENSG00000138835|chr9:113583958-113583958|C/-|frameshift_variant;RGS3|p.E892Rfs*27|1|0.39|ENSG00000138835|chr9:113584082-113584082|G/-|frameshift_variant;nc|ENSG00000138835|P49796-4|RGS3;ENSG00000138835|ENST00000695401|RGS3;nc|ENSG00000138835|P49796-6|RGS3;nc|ENSG00000138835|P49796|RGS3 RGS3|p.D677Gfs*6|1|0.38|ENSG00000138835|chr9:113536903-113536904|-/C|frameshift_variant RGS3|p.D677Gfs*6|1|0.38|ENSG00000138835|chr9:113536903-113536904|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 354.226806640625 3 354.226833 1059.65867 NaN NaN NaN NaN NaN NaN NaN 103.55 1 103.55 103.05 104.05 0 0 0 0 0.23508 1 20351 20351 0.26902 0 1 26342 4215 17426 17432 26016 26016 0.13122648004491566 LGKKVRVKCKY 11 Unmodified _LGKKVRVKCKY_ 0 0 0 ENST00000588595.5_1_19:9939013-9939118:+|nuORF ENST00000588595.5_1_19:9939013-9939118:+|nuORF ENST00000588595.5_1_19:9939013-9939118:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.9861145019531 4 331.208876 1320.8064 -0.42948 -0.00014225 0.40013 0.00013253 -0.029346 -9.7195E-06 331.4597402040312 21.985 0.21184 21.985 21.875 22.086 0 6 5 2 0 0 0 0.96216 1 3685 3685 0.45452 0 1 307060 26343 11573 17427 17433 26017 26017 0.15882539538483798 LGKLLLLRYL 10 Unmodified _LGKLLLLRYL_ 0 0 0 REV__ENSG00000143315|ENST00000368090|PIGM REV__ENSG00000143315|ENST00000368090|PIGM MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 401.271728515625 3 401.272548 1200.79581 NaN NaN NaN NaN NaN NaN NaN 97.087 1 97.087 96.587 97.587 0 0 0 0 0.22588 1 19024 19024 0.77653 0 1 + 26344 16710 17428 17434 26018 26018 0.20344880155698775 LGKLPLLYK 9 Unmodified _LGKLPLLYK_ 0 0 0 ENSG00000177694|ENST00000454872|NAALADL2;nc|ENSG00000177694|Q58DX5-2|NAALADL2;ENST00000485853.5_1_3:174577149-174974391:+|nuORF;ENST00000473253.5_1_3:174581768-175298945:+|nuORF ENSG00000177694|ENST00000454872|NAALADL2 ENSG00000177694|ENST00000454872|NAALADL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2789306640625 2 522.844428 1043.6743 -0.25273 -0.00013214 0.59283 0.00030996 0.3401 0.00017782 522.8447403683172 59.212 0.52052 56.302 56.11 56.631 -2.9105 20 14 2 0 0 0 0.87888 1 11406 11406 0 0 1 904030 26345 6532 17429 17435 26019 26019 0.15421257793195764 LGKNSELL 8 Unmodified _LGKNSELL_ 0 0 0 ENSG00000087269|ENST00000416614|NOP14;nc|ENSG00000087269|P78316-2|NOP14 ENSG00000087269|ENST00000416614|NOP14 ENSG00000087269|ENST00000416614|NOP14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21661376953125 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 101.11 1 96.812 96.312 97.312 -4.297 0 0 0 0.18898 1 19346 19346 28.487 0 1 26346 1713 17430 17436 26020 26020 0.05538382523195651 LGKQHRRPS 9 Unmodified _LGKQHRRPS_ 0 0 0 REV__MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant REV__MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2321472167969 3 360.212463 1077.61556 NaN NaN NaN NaN NaN NaN NaN 65.694 1 65.694 65.194 66.194 0 0 0 0 0.23508 1 12675 12675 2.7352 0.23671 1 + 26347 16387 17431 17437 26021 26021 0.0798559427141754 LGKTRADL 8 Unmodified _LGKTRADL_ 0 0 0 REV__ENSG00000196570|ENST00000358571|PFN3 REV__ENSG00000196570|ENST00000358571|PFN3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2231140136719 2 437.261259 872.507966 NaN NaN NaN NaN NaN NaN NaN 32.877 1 30.646 30.146 31.146 -2.2305 0 0 0 0.21039 1 5999 5999 16.942 0 1 + 26348 19260 17432 17438 26022 26022 0.06661204617319072 LGKWTKQW 8 Unmodified _LGKWTKQW_ 0 0 0 REV__ENST00000261396.5_1_1:229622146-229622245:-|nuORF REV__ENST00000261396.5_1_1:229622146-229622245:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6851196289062 2 523.792727 1045.5709 NaN NaN NaN NaN NaN NaN NaN 42.679 1 42.679 42.179 43.179 0 0 0 0 0.21486 1 7985 7985 7.2892 0.56607 1 + 26349 20174 17433 17439 26023 26023 0.049937704053718335 LGLCVSRH 8 Unmodified _LGLCVSRH_ 0 0 0 PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4;nc|ENSG00000244694|Q6ZW05-2|PTCHD4;PTCHD4|p.L94Wfs*21|1|0.4|ENSG00000244694|chr6:48068376-48068376|G/-|frameshift_variant PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant;PTCHD4|p.L94Wfs*21|1|0.4|ENSG00000244694|chr6:48068376-48068376|G/-|frameshift_variant PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 442.7413635253906 2 442.742179 883.469806 NaN NaN NaN NaN NaN NaN NaN 48.096 1 45.227 44.727 45.727 -2.869 0 0 0 0.23025 1 9097 9097 0.25148 0 1 26350 7885;12845 17434 17440 26024 26024 0.023409954310182002 LGLDITKL 8 Unmodified _LGLDITKL_ 0 0 0 nc|ENSG00000138650|Q9P2E7-2|PCDH10;ENSG00000138650|ENST00000264360|PCDH10;PCDH10|p.S121Lfs*7|1|0.23|ENSG00000138650|chr4:133150494-133150494|C/-|frameshift_variant;PCDH10|p.Q227Sfs*43|2|0.35|ENSG00000138650|chr4:133150813-133150813|C/-|frameshift_variant;PCDH10|p.L421Wfs*11|1|0.33|ENSG00000138650|chr4:133151396-133151396|C/-|frameshift_variant;PCDH10|p.Q552Rfs*13|1|0.45|ENSG00000138650|chr4:133151790-133151790|C/-|frameshift_variant nc|ENSG00000138650|Q9P2E7-2|PCDH10 nc|ENSG00000138650|Q9P2E7-2|PCDH10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2169189453125 2 436.776211 871.537869 NaN NaN NaN NaN NaN NaN NaN 140.24 1 135.27 134.77 135.77 -4.9721 0 0 0 0.21486 1 26992 26992 6.3541 0 1 26351 4194 17435 17441 26025 26025 0.0969614356264401 LGLERGER 8 Unmodified _LGLERGER_ 0 0 0 REV__HTRA3|p.G307Dfs*4|1|0.67|ENSG00000170801|chr4:8292333-8292333|G/-|frameshift_variant REV__HTRA3|p.G307Dfs*4|1|0.67|ENSG00000170801|chr4:8292333-8292333|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.510286 928.509028 -0.45775 -0.00014214 0.55701 0.00017296 0.099263 3.0822E-05 310.51039531768606 23.606 0.41989 23.606 23.372 23.792 0 15 11 2 0 0 0 1.0191 1 4028 4028 6.2058 6.2058 1 452160 + 26352 18179 17436 17442 26026 26026 0.041914189862382045 LGLERVELK 9 Unmodified _LGLERVELK_ 0 0 0 REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 353.8892517089844 3 352.885241 1055.63389 -0.23677 -8.3552E-05 0.1137 4.0122E-05 -0.12307 -4.343E-05 352.88525955097174 115.76 0.89076 111.28 110.84 111.73 -4.48 73 25 4 0 0 0 0.037776 1 22794 22794 67.838 16.423 1 18659000 + 26353 14514 17437 17443 26027 26027 0.10830291402749026 LGLERVELK 9 Unmodified _LGLERVELK_ 0 0 0 REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 352.885241 1055.63389 -0.295 -0.0001041 0.29775 0.00010507 0.002749 9.7007E-07 352.8852833677489 111.66 0.90372 111.66 111.21 112.11 0 0.25928 0.00030715 NaN 67.838 69 25 4 NaN NaN NaN NaN 0 NaN NaN 0 16305000 + 26354 14514 17437 17443 0.10830291402749026 LGLERVELK 9 Unmodified _LGLERVELK_ 0 0 0 REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 352.885241 1055.63389 -0.23677 -8.3552E-05 0.1137 4.0122E-05 -0.12307 -4.343E-05 352.88525955097174 115.76 0.89076 111.28 110.84 111.73 -4.48 -0.11879 0.00011231 NaN 67.838 73 25 4 NaN NaN NaN NaN 0 NaN NaN 0 18659000 + 26355 14514 17437 17443 0.10830291402749026 LGLERVELK 9 Unmodified _LGLERVELK_ 0 0 0 REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 352.885241 1055.63389 0.26646 9.403E-05 -0.39362 -0.0001389 -0.12716 -4.4871E-05 352.8850823256581 115.91 0.93069 111.33 110.87 111.8 -4.5815 -0.073738 -0.00042476 NaN 67.838 79 26 4 NaN NaN NaN NaN 0 NaN NaN 0 18882000 + 26356 14514 17437 17443 0.10830291402749026 LGLERVELK 9 Unmodified _LGLERVELK_ 0 0 0 REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 352.885241 1055.63389 -0.18143 -6.4025E-05 0.1448 5.1097E-05 -0.036635 -1.2928E-05 352.8852640264606 115.69 0.94917 111.33 110.93 111.88 -4.3585 -0.066753 0.00014523 NaN 67.838 75 26 4 NaN NaN NaN NaN 0 NaN NaN 0 19329000 + 26357 14514 17437 17443 0.10830291402749026 LGLFFALLNPV 11 Unmodified _LGLFFALLNPV_ 0 0 0 REV__ENSG00000229637|ENST00000422730|PRAC2 REV__ENSG00000229637|ENST00000422730|PRAC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2803955078125 2 602.360442 1202.70633 NaN NaN NaN NaN NaN NaN NaN 130.2 1 125.43 124.93 125.93 -4.7725 0 0 0 0.22085 1 25053 25053 13.906 0.86358 1 + 26358 19742 17438 17444 26028 26028 0.11308625476317502 LGLFLLLLLLL 11 Unmodified _LGLFLLLLLLL_ 0 0 0 nc|ENSG00000135409|Q16671-3|AMHR2;ENSG00000135409|ENST00000257863|AMHR2;nc|ENSG00000135409|Q16671-2|AMHR2 nc|ENSG00000135409|Q16671-3|AMHR2 nc|ENSG00000135409|Q16671-3|AMHR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.22174072265625 4 310.971531 1239.85702 -2.0596 -0.00064049 0.44909 0.00013965 -1.6105 -0.00050083 311.2218955954191 17.04 0.17932 15.525 15.412 15.591 -1.5148 6 4 2 0 0 0 0.82733 1 2445 2445 0 0 1 96157 26359 3926 17439 17445 26029 26029 0.2466839213516323 LGLFPSVPLT 10 Unmodified _LGLFPSVPLT_ 0 0 0 ENST00000311521.8_1_2:120124703-120124766:+|nuORF ENST00000311521.8_1_2:120124703-120124766:+|nuORF ENST00000311521.8_1_2:120124703-120124766:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2604370117188 2 522.310418 1042.60628 NaN NaN NaN NaN NaN NaN NaN 154.93 1 150.15 149.65 150.65 -4.7791 0 0 0 0.22588 1 30800 30800 6.7232 1.9672 1 26360 8653 17440 17446 26030 26030 0.08668388142518779 LGLFYSYNRK 10 Unmodified _LGLFYSYNRK_ 0 0 0 REV__CLEC4C|p.S138Y|1|0.13|ENSG00000198178|chr12:7730881-7730881|G/T|missense_variant REV__CLEC4C|p.S138Y|1|0.13|ENSG00000198178|chr12:7730881-7730881|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7565307617188 2 630.840405 1259.66626 NaN NaN NaN NaN NaN NaN NaN 78.462 1 78.462 77.962 78.962 0 0 0 0 2.8426 1 15271 15271 0.013265 0 1 + 26361 13447 17441 17447 26031 26031 0.046810788057428 LGLGLRCSP 9 Unmodified _LGLGLRCSP_ 0 0 0 REV__ENST00000230990.6_1_5:139713740-139714264:-|nuORF REV__ENST00000230990.6_1_5:139713740-139714264:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23822021484375 2 458.257662 914.500772 NaN NaN NaN NaN NaN NaN NaN 89.514 1 85.736 85.236 86.236 -3.7779 0 0 0 0.21408 1 17135 17135 19.439 2.4967 1 + 26362 20067 17442 17448 26032 26032 0.04010148745248898 LGLHNYAQ 8 Unmodified _LGLHNYAQ_ 0 0 0 REV__ENST00000533620.5_1_11:120169092-120189098:+|nuORF REV__ENST00000533620.5_1_11:120169092-120189098:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2277526855469 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 112.99 1 108.72 108.22 109.22 -4.2725 0 0 0 0.21486 1 21759 21759 9.3474 0.75416 1 + 26363 22797 17443 17449 26033 26033 0.00036345066178000707 LGLHPVGG 8 Unmodified _LGLHPVGG_ 0 0 0 REV__ENST00000379573.6_1_20:3801261-3802808:+|nuORF REV__ENST00000379573.6_1_20:3801261-3802808:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2188720703125 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 52.269 1 52.269 51.769 52.769 0 0 0 0 0.23711 1 9934 9934 0.063987 0 1 + 26364 21140 17444 17450 26034 26034 0.038898788713822796 LGLHPWIA 8 Unmodified _LGLHPWIA_ 0 0 0 ENSG00000150656|ENST00000358821|CNDP1;ENST00000582461.1_1_18:72245409-72251014:+|nuORF ENSG00000150656|ENST00000358821|CNDP1 ENSG00000150656|ENST00000358821|CNDP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.747802734375 2 453.763438 905.512323 NaN NaN NaN NaN NaN NaN NaN 75.499 1 71.865 71.365 72.365 -3.6337 0 0 0 0.21486 1 14351 14351 11.114 2.5212 1 26365 4831 17445 17451 26035 26035 0.05578713830880133 LGLHYLRQP 9 Unmodified _LGLHYLRQP_ 0 0 0 REV__nc|ENSG00000187634|Q96NU1-1|SAMD11 REV__nc|ENSG00000187634|Q96NU1-1|SAMD11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.5500183105469 3 366.213581 1095.61891 -0.29449 -0.00010785 0.11335 4.1512E-05 -0.18114 -6.6336E-05 366.21365332063823 33.76 1.1524 31.544 31.182 32.334 -2.2158 110 32 5 0 0 0 0.45972 1 5863 5863 8.1555 1.9497 1 92383000 + 26366 19101 17446 17452 26036 26036 0.0749284432542936 LGLHYLRQP 9 Unmodified _LGLHYLRQP_ 0 0 0 REV__nc|ENSG00000187634|Q96NU1-1|SAMD11 REV__nc|ENSG00000187634|Q96NU1-1|SAMD11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 366.213581 1095.61891 -0.1902 -6.9653E-05 -0.055315 -2.0257E-05 -0.24551 -8.991E-05 366.2136279170495 31.476 1.1157 31.476 31.18 32.296 0 -0.061535 -1.3654E-05 NaN 8.1555 102 31 5 NaN NaN NaN NaN 0 NaN NaN 0 148710000 + 26367 19101 17446 17452 0.0749284432542936 LGLHYLRQP 9 Unmodified _LGLHYLRQP_ 0 0 0 REV__nc|ENSG00000187634|Q96NU1-1|SAMD11 REV__nc|ENSG00000187634|Q96NU1-1|SAMD11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 366.213581 1095.61891 -0.32129 -0.00011766 0.13227 4.8441E-05 -0.18901 -6.9219E-05 366.2136703792636 33.901 1.0733 31.584 31.252 32.325 -2.3175 0.045814 0.00019244 NaN 8.1555 96 30 5 NaN NaN NaN NaN 0 NaN NaN 0 108100000 + 26368 19101 17446 17452 0.0749284432542936 LGLHYLRQP 9 Unmodified _LGLHYLRQP_ 0 0 0 REV__nc|ENSG00000187634|Q96NU1-1|SAMD11 REV__nc|ENSG00000187634|Q96NU1-1|SAMD11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 366.213581 1095.61891 0.21738 7.9608E-05 -0.39678 -0.00014531 -0.1794 -6.5699E-05 366.2134888551222 33.694 1.137 31.547 31.222 32.359 -2.1468 0.0090133 -0.00038881 NaN 8.1555 105 32 5 NaN NaN NaN NaN 0 NaN NaN 0 107800000 + 26369 19101 17446 17452 0.0749284432542936 LGLHYLRQP 9 Unmodified _LGLHYLRQP_ 0 0 0 REV__nc|ENSG00000187634|Q96NU1-1|SAMD11 REV__nc|ENSG00000187634|Q96NU1-1|SAMD11 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 366.213581 1095.61891 -0.29449 -0.00010785 0.11335 4.1512E-05 -0.18114 -6.6336E-05 366.21365332063823 33.76 1.1524 31.544 31.182 32.334 -2.2158 0.0067084 0.00017165 NaN 8.1555 110 32 5 NaN NaN NaN NaN 0 NaN NaN 0 92383000 + 26370 19101 17446 17452 0.0749284432542936 LGLIILVILV 10 Unmodified _LGLIILVILV_ 0 0 0 tr|U7SQQ2|U7SQQ2_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01749PE=3SV=1 tr|U7SQQ2|U7SQQ2_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01749PE=3SV=1 tr|U7SQQ2|U7SQQ2_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01749PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2827758789062 2 533.385929 1064.7573 NaN NaN NaN NaN NaN NaN NaN 158.4 1 153.12 152.62 153.62 -5.2748 0 0 0 0.22588 1 30742 30742 0.45834 0 1 26371 26055 17447 17453 26037 26037 0.22751574521180373 LGLIYDLKM 9 Unmodified _LGLIYDLKM_ 0 0 0 REV__ENSG00000170889|ENST00000302907|RPS9 REV__ENSG00000170889|ENST00000302907|RPS9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.262451171875 2 533.304278 1064.594 NaN NaN NaN NaN NaN NaN NaN 120.93 1 116.41 115.91 116.91 -4.5221 0 0 0 0.21848 1 23839 23839 18.135 2.2878 1 + 26372 18187 17448 17454 26038 26038 0.06429028407842452 LGLKSLGRTHR 11 Unmodified _LGLKSLGRTHR_ 0 0 0 REV__ENSG00000187545|ENST00000235347|PRAMEF10 REV__ENSG00000187545|ENST00000235347|PRAMEF10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 413.2169189453125 3 413.254439 1236.74149 NaN NaN NaN NaN NaN NaN NaN 122.26 1 117.71 117.21 118.21 -4.5476 0 0 0 0.23698 1 24101 24101 1.3296 0 1 + 26373 19094 17449 17455 26039 26039 0.1325868105684549 LGLKSMAKRAK 11 Unmodified _LGLKSMAKRAK_ 0 0 0 REV__ENSG00000196531|ENST00000454682|NACA REV__ENSG00000196531|ENST00000454682|NACA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2772827148438 2 601.873725 1201.7329 NaN NaN NaN NaN NaN NaN NaN 168.54 1 168.54 168.04 169.04 0 0 0 0 0.2321 1 34526 34526 6.6304 2.686 1 + 26374 19256 17450 17456 26040 26040 0.1400999109600889 LGLLEPYFWKK 11 Unmodified _LGLLEPYFWKK_ 0 0 0 RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant;nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17 RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2420654296875 3 465.267463 1392.78056 NaN NaN NaN NaN NaN NaN NaN 165.53 1 160.74 160.24 161.24 -4.7898 0 0 0 0.22632 1 33159 33159 0.2986 0 1 26375 3775 17451 17457 26041 26041 0.09987968567816097 LGLLERKE 8 Unmodified _LGLLERKE_ 0 0 0 nc|ENSG00000104814|Q92918|MAP4K1;ENSG00000104814|ENST00000396857|MAP4K1 nc|ENSG00000104814|Q92918|MAP4K1 nc|ENSG00000104814|Q92918|MAP4K1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7268981933594 2 479.290017 956.565481 0.11204 5.3698E-05 0.068144 3.2661E-05 0.18018 8.6359E-05 479.2900061867475 145.54 0.68742 140.43 140.11 140.8 -5.1038 45 19 3 0 0 0 0.37918 1 28069 28069 53.576 2.7205 1 11031000 26376 2257 17452 17458 26042 26042 0.08546046822903008 LGLLIKKFL 9 Unmodified _LGLLIKKFL_ 0 0 0 REV__ENSG00000137860|ENST00000347644|SLC28A2 REV__ENSG00000137860|ENST00000347644|SLC28A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26318359375 2 522.862621 1043.71069 -0.52737 -0.00027574 0.64205 0.0003357 0.11468 5.996E-05 522.8629550188542 96.568 0.34543 92.333 92.16 92.505 -4.2348 14 9 2 0 0 0 0.63929 1 18415 18415 0.0033805 0 1 606890 + 26377 16421 17453 17459 26043 26043 0.19058134689885264 LGLRRLLLLL 10 Unmodified _LGLRRLLLLL_ 0 0 0 ENST00000525370.5_1_19:50310410-50314932:-|nuORF;nc|ENSG00000010361|Q9BT04-3|FUZ;ENSG00000010361|ENST00000313777|FUZ ENST00000525370.5_1_19:50310410-50314932:-|nuORF ENST00000525370.5_1_19:50310410-50314932:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.255859375 2 590.418626 1178.8227 NaN NaN NaN NaN NaN NaN NaN 151.07 1 146.32 145.82 146.82 -4.7523 0 0 0 0.22588 1 30011 30011 0.45834 0 1 26378 1063 17454 17460 26044 26044 0.24043988766902658 LGLRRLLLLL 10 Unmodified _LGLRRLLLLL_ 0 0 0 ENST00000525370.5_1_19:50310410-50314932:-|nuORF;nc|ENSG00000010361|Q9BT04-3|FUZ;ENSG00000010361|ENST00000313777|FUZ ENST00000525370.5_1_19:50310410-50314932:-|nuORF ENST00000525370.5_1_19:50310410-50314932:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2697143554688 2 590.418626 1178.8227 NaN NaN NaN NaN NaN NaN NaN 110.57 1 106.08 105.58 106.58 -4.4915 0 0 0 0.22588 1 21224 21224 0.45834 0 1 26379 1063 17454 17460 26045 26045 0.24043988766902658 LGLSEEPE 8 Unmodified _LGLSEEPE_ 0 0 0 ENSG00000185385|ENST00000641113|OR7A17 ENSG00000185385|ENST00000641113|OR7A17 ENSG00000185385|ENST00000641113|OR7A17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2152099609375 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 139.75 1 135.1 134.6 135.6 -4.6439 0 0 0 0.21486 1 27590 27590 6.3541 0 1 26380 6986 17455 17461 26046 26046 -0.028581933643749835 LGLSTNSAAQ 10 Unmodified _LGLSTNSAAQ_ 0 0 0 REV__ENSG00000173302|ENST00000309926|GPR148 REV__ENSG00000173302|ENST00000309926|GPR148 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2510681152344 2 481.251089 960.487624 0.00093799 4.5141E-07 0.12975 6.244E-05 0.13068 6.2891E-05 481.25114282534514 147.47 0.41809 147.47 147.26 147.68 0 19 11 2 0 0 0 0.67319 1 29528 29528 13.906 0 1 2012400 + 26381 18349 17456 17462 26047 26047 0.005799891668630153 LGLSTNSAAQ 10 Unmodified _LGLSTNSAAQ_ 0 0 0 REV__ENSG00000173302|ENST00000309926|GPR148 REV__ENSG00000173302|ENST00000309926|GPR148 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25103759765625 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 152.83 1 147.61 147.11 148.11 -5.2209 0 0 0 0.22552 1 29620 29620 18.146 1.9972 1 + 26382 18349 17456 17462 26048 26048 0.005799891668630153 LGLYVIKL 8 Unmodified _LGLYVIKL_ 0 0 0 ENST00000312046.10_2_8:107718941-107718992:+|nuORF ENST00000312046.10_2_8:107718941-107718992:+|nuORF ENST00000312046.10_2_8:107718941-107718992:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2407531738281 2 459.804771 917.59499 NaN NaN NaN NaN NaN NaN NaN 57.07 1 54.175 53.675 54.675 -2.8944 0 0 0 0.21486 1 10949 10949 6.3541 0 1 26383 8655 17457 17463 26049 26049 0.13289610839024135 LGMDTRAEEP 10 Unmodified _LGMDTRAEEP_ 0 0 0 AMPH|p.A487Pfs*19|2|0.31|ENSG00000078053|chr7:38394154-38394154|C/-|frameshift_variant;ENSG00000078053|ENST00000356264|AMPH AMPH|p.A487Pfs*19|2|0.31|ENSG00000078053|chr7:38394154-38394154|C/-|frameshift_variant AMPH|p.A487Pfs*19|2|0.31|ENSG00000078053|chr7:38394154-38394154|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.1336975097656 3 373.509734 1117.50737 -0.30709 -0.0001147 0.91868 0.00034314 0.61159 0.00022844 373.5099889115997 89.546 0.70601 89.546 89.243 89.949 0 38 19 3 0 0 0 0.91149 1 17527 17527 0.69767 0 1 5749300 26384 153 17458 17464 26050 26050 -0.04668002884704947 LGNAEEPSI 9 Unmodified _LGNAEEPSI_ 0 0 0 nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE nc|ENSG00000179397|Q5SY80-2|CATSPERE nc|ENSG00000179397|Q5SY80-2|CATSPERE MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.257568359375 2 465.232364 928.450176 0.30506 0.00014192 -0.84129 -0.00039139 -0.53623 -0.00024947 465.23199145148055 75.52 0.78654 75.52 75.067 75.853 0 34 22 2 0 0 0 0.46541 1 14684 14684 21.747 0.20967 1 2062600 26385 6629 17459 17465 26051 26051 -0.01691102098743613 LGNETVVAGPE 11 Unmodified _LGNETVVAGPE_ 0 0 0 ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2 ENST00000491976.1_1_1:31888748-31907043:+|nuORF ENST00000491976.1_1_1:31888748-31907043:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7904052734375 2 543.277303 1084.54005 -0.01943 -1.0556E-05 -1.0877 -0.00059093 -1.1071 -0.00060149 543.2766699394045 45.519 0.80889 42.652 42.154 42.963 -2.8665 57 22 3 0 0 0 0.42348 1 8323 8323 27.629 6.0918 1 5272900 26386 5919 17460 17466 26052 26052 0.001165275098173879 LGNHLSQF 8 Unmodified _LGNHLSQF_ 0 0 0 REV__CRADD|p.R185W|1|0.42|ENSG00000169372|chr12:93850224-93850224|C/T|missense_variant REV__CRADD|p.R185W|1|0.42|ENSG00000169372|chr12:93850224-93850224|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23828125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 75.317 1 75.317 74.817 75.817 0 0 0 0 0.21486 1 14626 14626 10.183 0 1 + 26387 13576 17461 17467 26053 26053 0.0003634506618936939 LGNILKIIY 9 Unmodified _LGNILKIIY_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6768798828125 2 523.83406 1045.65357 0.3082 0.00016144 1.1711 0.00061348 1.4793 0.00077493 524.3364847808474 63.521 0.41034 60.265 60.022 60.432 -3.2567 22 11 3 0 0 0 0.86532 1 11887 11887 4.756 0.81161 1 984950 26388 7465 17462 17468 26054 26054 0.13256667413520518 LGNLLILLAVI 11 Unmodified _LGNLLILLAVI_ 0 0 0 ENSG00000161807|ENST00000541538|OR7G1;ENSG00000170923|ENST00000641081|OR7G2 ENSG00000161807|ENST00000541538|OR7G1 ENSG00000161807|ENST00000541538|OR7G1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3262939453125 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 157.43 1 152.15 151.65 152.65 -5.2854 0 0 0 0.23698 1 30550 30550 1.3295 0 1 26389 5301 17463 17469 26055 26055 0.19957771544522984 LGNQESYFI 9 Unmodified _LGNQESYFI_ 0 0 0 REV__ENSG00000145861|ENST00000652664|C1QTNF2 REV__ENSG00000145861|ENST00000652664|C1QTNF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.55743408203125 3 357.509952 1069.50803 -1.9951 -0.00071329 -0.46118 -0.00016488 -2.4563 -0.00087816 357.5097768907962 17.441 0.45037 15.927 15.768 16.219 -1.5148 29 12 3 0 0 0 0.86627 1 2513 2513 1.1933 0 1 7299000 + 26390 16858 17464 17470 26056 26056 -0.023948401733377978 LGNTPEDIA 9 Unmodified _LGNTPEDIA_ 0 0 0 ARFGEF1|p.T728N|1|0.09|ENSG00000066777|chr8:67259867-67259867|G/T|missense_variant ARFGEF1|p.T728N|1|0.09|ENSG00000066777|chr8:67259867-67259867|G/T|missense_variant ARFGEF1|p.T728N|1|0.09|ENSG00000066777|chr8:67259867-67259867|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2393798828125 2 465.232364 928.450176 -0.098086 -4.5633E-05 -0.35489 -0.00016511 -0.45297 -0.00021074 465.232136197706 79.533 1.0482 75.729 75.128 76.176 -3.8048 43 29 2 0 0 0 0.60805 1 15146 15146 12.532 0 1 1501600 26391 198 17465 17471 26057 26057 -0.01691102098754982 LGPAMQEE 8 Unmodified _LGPAMQEE_ 0 0 0 ENSG00000135870|ENST00000367696|RC3H1;nc|ENSG00000135870|Q5TC82-2|RC3H1;nc|ENSG00000056586|Q9HBD1-2|RC3H2;nc|ENSG00000056586|Q9HBD1-3|RC3H2;RC3H2|p.F582Mfs*6|1|0.08|ENSG00000056586|chr9:122860022-122860023|-/AAAAGAAACAT|frameshift_variant;nc|ENSG00000056586|Q9HBD1-4|RC3H2;RC3H2|p.T1132Qfs*5|1|0.29|ENSG00000056586|chr9:122849809-122849809|T/-|frameshift_variant;ENSG00000056586|ENST00000357244|RC3H2 ENSG00000135870|ENST00000367696|RC3H1;nc|ENSG00000056586|Q9HBD1-2|RC3H2 ENSG00000135870|ENST00000367696|RC3H1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.7042541503906 2 437.702386 873.390218 NaN NaN NaN NaN NaN NaN NaN 148.16 1 143.45 142.95 143.95 -4.7095 0 0 0 0.23711 1 29417 29417 0.063987 0 1 26392 3959;1280 17466 17472 26058 26058 -0.051541160336455505 LGPFQRLTY 9 Unmodified _LGPFQRLTY_ 0 0 0 REV__ENSG00000144647|ENST00000344697|POMGNT2 REV__ENSG00000144647|ENST00000344697|POMGNT2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78076171875 2 547.803291 1093.59203 NaN NaN NaN NaN NaN NaN NaN 133.85 1 129.21 128.71 129.71 -4.6399 0 0 0 0.23508 1 26392 26392 7.9102 1.187 1 + 26393 16793 17467 17473 26059 26059 0.04897735714234841 LGPGGDVAQ 9 Unmodified _LGPGGDVAQ_ 0 0 0 REV__CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant REV__CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.36572265625 1 813.410108 812.402832 0.54915 0.00044668 -0.086612 -7.0451E-05 0.46253 0.00037623 813.409975068708 32.916 0.73161 30.685 30.294 31.025 -2.2305 46 20 3 0 0 0 0.62102 1 5972 5972 11.64 0.81637 1 5364100 + 26394 13253 17468 17474 26060 26060 -0.01087336579098519 LGPGGDVAQ 9 Unmodified _LGPGGDVAQ_ 0 0 0 REV__CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant REV__CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 813.410108 812.402832 0.5068 0.00041224 0.15528 0.00012631 0.66208 0.00053854 813.410152238412 30.779 0.76366 30.779 30.417 31.18 0 0.08963 0.00012781 NaN 11.64 47 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5920400 + 26395 13253 17468 17474 -0.01087336579098519 LGPGRHPTK 9 Unmodified _LGPGRHPTK_ 0 0 0 REV__ENSG00000228570|ENST00000429984|NUTM2E REV__ENSG00000228570|ENST00000429984|NUTM2E MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7787170410156 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 154.2 1 154.2 153.7 154.7 0 0 0 0 0.19649 1 30906 30906 0.073264 0 1 + 26396 19736 17469 17475 26061 26061 0.06343715602781685 LGPKKLVP 8 Unmodified _LGPKKLVP_ 0 0 0 ENST00000469415.1_1_13:113748772-113751170:+|nuORF;nc|ENSG00000126217|O15068-5|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L;nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L ENST00000469415.1_1_13:113748772-113751170:+|nuORF ENST00000469415.1_1_13:113748772-113751170:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.2906494140625 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 79.957 1 76.153 75.653 76.653 -3.8048 0 0 0 0.21486 1 15173 15173 2.8892 0 1 26397 3419 17470 17476 26062 26062 0.13276457524796115 LGPLKRKVILH 11 Unmodified _LGPLKRKVILH_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;RYR3|p.N4580Mfs*8|1|0.37|ENSG00000198838|chr15:33853618-33853618|A/-|frameshift_variant;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.E3943Rfs*18|1|0.12|ENSG00000198838|chr15:33837800-33837801|-/A|frameshift_variant;RYR3|p.F766Lfs*13|1|0.12|ENSG00000198838|chr15:33613314-33613314|T/-|frameshift_variant;RYR3|p.G2237Efs*57|1|0.42|ENSG00000198838|chr15:33722800-33722800|G/-|frameshift_variant;RYR3|p.E2211Qfs*84|1|0.14|ENSG00000198838|chr15:33722725-33722726|-/CA|frameshift_variant nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25164794921875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 142.49 1 142.49 141.99 142.99 0 0 0 0 0.22632 1 28409 28409 0.0072825 0 1 26398 7505 17471 17477 26063 26063 0.21390489652844735 LGPLPCRLS 9 Unmodified _LGPLPCRLS_ 0 0 0 ENST00000543049.1_1_16:57114926-57116437:+|nuORF ENST00000543049.1_1_16:57114926-57116437:+|nuORF ENST00000543049.1_1_16:57114926-57116437:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7416076660156 2 478.273312 954.532072 -0.10672 -5.1039E-05 -0.17593 -8.4143E-05 -0.28265 -0.00013518 478.27333833332125 57.618 0.32185 54.724 54.484 54.806 -2.8944 11 8 2 0 0 0 0.80521 1 11046 11046 6.7232 2.3939 1 502280 26399 11097 17472 17478 26064 26064 0.05298721779342941 LGPMVLMI 8 Unmodified _LGPMVLMI_ 0 0 0 ENSG00000101290|ENST00000460006|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENST00000486875.1_1_20:5107738-5156066:+|nuORF;ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2 ENSG00000101290|ENST00000460006|CDS2;ENST00000467923.5_1_20:5107766-5163790:+|nuORF ENSG00000101290|ENST00000460006|CDS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2162170410156 2 437.25046 872.486367 NaN NaN NaN NaN NaN NaN NaN 96.1 1 91.903 91.403 92.403 -4.1971 0 0 0 0.21486 1 18347 18347 11.114 1.767 1 26400 2054;10158 17473 17479 26065 26065 0.04502360272738315 LGPRGGRHL 9 Unmodified _LGPRGGRHL_ 0 0 0 ENSG00000278558|ENST00000612978|TMEM191B ENSG00000278558|ENST00000612978|TMEM191B ENSG00000278558|ENST00000612978|TMEM191B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7848205566406 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 150.33 1 145.6 145.1 146.1 -4.7323 0 0 0 0.23508 1 29858 29858 7.9102 0 1 26401 8044 17474 17480 26066 26066 0.07466537696939213 LGPRKHFIS 9 Unmodified _LGPRKHFIS_ 0 0 0 nc|ENSG00000001460|Q5TH74-2|STPG1;nc|ENSG00000001460|Q5TH74-3|STPG1;ENSG00000001460|ENST00000337248|STPG1 nc|ENSG00000001460|Q5TH74-2|STPG1 nc|ENSG00000001460|Q5TH74-2|STPG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.21051025390625 3 352.210059 1053.60835 NaN NaN NaN NaN NaN NaN NaN 51.947 1 51.947 51.447 52.447 0 0 0 0 0.19705 1 9869 9869 2.6312 1.4164 1 26402 955 17475 17481 26067 26067 0.08368861670987826 LGPRQRSLLL 10 Unmodified _LGPRQRSLLL_ 0 0 0 REV__nc|ENSG00000126107|Q5T447-2|HECTD3 REV__nc|ENSG00000126107|Q5T447-2|HECTD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.322021484375 2 576.864215 1151.71388 0.31268 0.00018037 1.6272 0.00093866 1.9399 0.001119 576.8644241893969 162.92 0.13895 157.77 157.68 157.82 -5.1438 5 3 2 0 0 0 0.89521 1 31684 31684 6.7232 6.3224 1 3666200 + 26403 15849 17476 17482 26068 26068 0.14408777796620598 LGPSPLRPND 10 Unmodified _LGPSPLRPND_ 0 0 0 REV__nc|ENSG00000074047|P10070|GLI2 REV__nc|ENSG00000074047|P10070|GLI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2643432617188 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 162.66 1 157.47 156.97 157.97 -5.1878 0 0 0 0.22583 1 31595 31595 13.906 3.8321 1 + 26404 14308 17477 17483 26069 26069 0.031759573291765264 LGQAQKVFQL 10 Unmodified _LGQAQKVFQL_ 0 0 0 ENSG00000187492|ENST00000412678|CDHR4 ENSG00000187492|ENST00000412678|CDHR4 ENSG00000187492|ENST00000412678|CDHR4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 566.3984375 2 566.329673 1130.64479 NaN NaN NaN NaN NaN NaN NaN 143.98 1 139.31 138.81 139.81 -4.6694 0 0 0 0.22588 1 28493 28493 10.074 0.6908 1 26405 7107 17478 17484 26070 26070 0.08469693777033172 LGQEQTPR 8 Unmodified _LGQEQTPR_ 0 0 0 STRC|p.P154Lfs*30|1|0.3|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant;STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC STRC|p.P154Lfs*30|1|0.3|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant STRC|p.P154Lfs*30|1|0.3|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2502746582031 2 464.745973 927.477394 0.27312 0.00012693 1.6645 0.00077355 1.9376 0.00090048 464.74553352787336 39.536 0.83239 39.536 39.166 39.998 0 49 23 3 0 0 0 8448 1 7374 7374 0.68139 0 1 3642100 26406 7869 17479 17485 26071 26071 0.010754262322734576 LGQEQTPR 8 Unmodified _LGQEQTPR_ 0 0 0 STRC|p.P154Lfs*30|1|0.3|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant;STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC STRC|p.P154Lfs*30|1|0.3|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant STRC|p.P154Lfs*30|1|0.3|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24993896484375 2 464.745973 927.477394 -0.09948 -4.6233E-05 2.1854 0.0010156 2.0859 0.00096941 464.745858840736 42.293 1.0201 39.642 38.9 39.92 -2.651 60 28 3 0 0 0 8448 1 7644 7644 0.25148 0 1 3630700 26407 7869 17479 17485 26072 26072 0.010754262322734576 LGQEQTPR 8 Unmodified _LGQEQTPR_ 0 0 0 STRC|p.P154Lfs*30|1|0.3|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant;STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC STRC|p.P154Lfs*30|1|0.3|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant STRC|p.P154Lfs*30|1|0.3|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2496643066406 2 464.745973 927.477394 0.019217 8.9312E-06 1.5873 0.00073771 1.6066 0.00074664 464.74575053579446 42.233 0.8832 39.627 38.98 39.863 -2.606 51 24 3 0 0 0 8448 1 7615 7615 0.68139 0 1 4717600 26408 7869 17479 17485 26073 26073 0.010754262322734576 LGQGTWGPI 9 Unmodified _LGQGTWGPI_ 0 0 0 REV__ENST00000487163.5_1_1:161131815-161133927:+|nuORF REV__ENST00000487163.5_1_1:161131815-161133927:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2497863769531 2 464.747985 927.481417 0.27312 0.00012693 -2.6634 -0.0012378 -2.3903 -0.0011109 464.74553352787336 39.536 0.83239 39.536 39.166 39.998 0 49 23 3 0 0 0 0.28246 1 7327 7327 2.6312 0 1 3642100 + 26409 22252 17480 17486 26074 26074 0.01477515725991907 LGQGWTLGP 9 Unmodified _LGQGWTLGP_ 0 0 0 ENST00000312838.8_1_16:88763669-88763882:-|nuORF ENST00000312838.8_1_16:88763669-88763882:-|nuORF ENST00000312838.8_1_16:88763669-88763882:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.248779296875 2 464.747985 927.481417 -0.09948 -4.6233E-05 -2.1425 -0.00099573 -2.242 -0.001042 464.745858840736 42.293 1.0201 39.642 38.9 39.92 -2.651 60 28 3 0 0 0 0.12935 1 7603 7603 1.2148 0 1 3630700 26410 8661 17481 17487 26075 26075 0.014775157260032756 LGQGWTLGP 9 Unmodified _LGQGWTLGP_ 0 0 0 ENST00000312838.8_1_16:88763669-88763882:-|nuORF ENST00000312838.8_1_16:88763669-88763882:-|nuORF ENST00000312838.8_1_16:88763669-88763882:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24908447265625 2 464.747985 927.481417 0.019217 8.9312E-06 -2.7405 -0.0012737 -2.7213 -0.0012647 464.74575053579446 42.233 0.8832 39.627 38.98 39.863 -2.606 51 24 3 0 0 0 0.2213 1 7572 7572 1.2148 0 1 4717600 26411 8661 17481 17487 26076 26076 0.014775157260032756 LGQKLVAAY 9 Unmodified _LGQKLVAAY_ 0 0 0 nc|ENSG00000106330|O75425-4|MOSPD3;nc|ENSG00000106330|O75425-3|MOSPD3;nc|ENSG00000106330|O75425-2|MOSPD3;ENSG00000106330|ENST00000393950|MOSPD3 nc|ENSG00000106330|O75425-4|MOSPD3 nc|ENSG00000106330|O75425-4|MOSPD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.785400390625 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 145.91 1 145.91 145.41 146.41 0 0 0 0 0.23508 1 29170 29170 8.5933 0.68312 1 26412 12275 17482 17488 26077 26077 0.07734948311224343 LGQQLRDK 8 Unmodified _LGQQLRDK_ 0 0 0 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7234191894531 2 479.277441 956.540328 0.17043 8.1686E-05 0.068187 3.2681E-05 0.23862 0.00011437 479.27734314695687 132.32 2.6165 127.52 125.67 128.29 -4.799 148 74 3 0 0 0 1.0011 1 25112 25112 12.532 4.6214 1 6088400 26413 7791 17483 17489 26078 26078 0.06031992020314192 LGQTRPDE 8 Unmodified _LGQTRPDE_ 0 0 0 REV__ENST00000466609.1_1_3:98377983-98378526:+|nuORF REV__ENST00000466609.1_1_3:98377983-98378526:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23016357421875 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 139.17 1 134.22 133.72 134.72 -4.952 0 0 0 0.21486 1 26768 26768 10.183 0 1 + 26414 15718 17484 17490 26079 26079 -0.014885665216752386 LGQVLLLLLN 10 Unmodified _LGQVLLLLLN_ 0 0 0 REV__ENSG00000172292|ENST00000305747|CERS6 REV__ENSG00000172292|ENST00000305747|CERS6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.9300231933594 3 365.909387 1094.70633 NaN NaN NaN NaN NaN NaN NaN 9.9767 1 9.1825 8.6825 9.6825 -0.79424 0 0 0 0.22588 1 1202 1202 0 0 1 + 26415 18280 17485 17491 26080 26080 0.16276625476348272 LGRAAAGV 8 Unmodified _LGRAAAGV_ 0 0 0 ENST00000310924.6_1_17:77925300-77926551:-|nuORF ENST00000310924.6_1_17:77925300-77926551:-|nuORF ENST00000310924.6_1_17:77925300-77926551:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5594482421875 2 357.716488 713.418422 NaN NaN NaN NaN NaN NaN NaN 31.865 1 29.839 29.339 30.339 -2.0264 0 0 0 0.23664 1 5512 5512 3.2813 0 1 26416 8647 17486 17492 26081 26081 0.0502499472860336 LGRAKRFLRK 10 Unmodified _LGRAKRFLRK_ 0 0 0 ENSG00000253117|ENST00000254627|OC90;nc|ENSG00000253117|Q02509-3|OC90 ENSG00000253117|ENST00000254627|OC90 ENSG00000253117|ENST00000254627|OC90 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.759521484375 2 622.906748 1243.79894 NaN NaN NaN NaN NaN NaN NaN 110.64 1 106.21 105.71 106.71 -4.4231 0 0 0 2.8426 1 21800 21800 0 0 1 26417 7909 17487 17493 26082 26082 0.18679568053062212 LGRFSRLVLWF 11 Unmodified _LGRFSRLVLWF_ 0 0 0 ENSG00000101890|ENST00000218006|GUCY2F;GUCY2F|p.V883Pfs*16|1|0.02|ENSG00000101890|chrX:109392043-109392046|GACC/-|frameshift_variant;GUCY2F|p.E320Rfs*16|1|0.17|ENSG00000101890|chrX:109465216-109465217|-/T|frameshift_variant ENSG00000101890|ENST00000218006|GUCY2F ENSG00000101890|ENST00000218006|GUCY2F MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2474060058594 3 465.274952 1392.80303 NaN NaN NaN NaN NaN NaN NaN 92.459 1 88.65 88.15 89.15 -3.8083 0 0 0 0.22632 1 17717 17717 0.026206 0 1 26418 2093 17488 17494 26083 26083 0.12233612756108414 LGRGRPRPKN 10 Unmodified _LGRGRPRPKN_ 0 0 0 REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3223266601562 2 575.84943 1149.68431 NaN NaN NaN NaN NaN NaN NaN 11.86 1 11.86 11.36 12.36 0 0 0 0 0.22588 1 1607 1607 1.6526 0.17072 1 + 26419 14661 17489 17495 26084 26084 0.11545258571118211 LGRHMLFP 8 Unmodified _LGRHMLFP_ 0 0 0 REV__ENSG00000197591|ENST00000355784|OR11L1 REV__ENSG00000197591|ENST00000355784|OR11L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1803894042969 3 324.181224 969.521842 NaN NaN NaN NaN NaN NaN NaN 61.975 1 61.975 61.475 62.475 0 0 0 0 0.21486 1 11891 11891 1.8442 0 1 + 26420 19353 17490 17496 26085 26085 0.03586158844768761 LGRIFRKV 8 Unmodified _LGRIFRKV_ 0 0 0 nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5 nc|ENSG00000185988|Q496M5-2|PLK5 nc|ENSG00000185988|Q496M5-2|PLK5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 330.22735595703125 3 330.218666 987.634169 NaN NaN NaN NaN NaN NaN NaN 84.62 1 80.956 80.456 81.456 -3.6641 0 0 0 0.21486 1 16541 16541 1.6526 0 1 26421 7026 17491 17497 26086 26086 0.13985755913267894 LGRKAEEL 8 Unmodified _LGRKAEEL_ 0 0 0 REV__ENSG00000134321|ENST00000382040|RSAD2 REV__ENSG00000134321|ENST00000382040|RSAD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2268371582031 2 458.266542 914.51853 NaN NaN NaN NaN NaN NaN NaN 87.552 1 83.556 83.056 84.056 -3.9953 0 0 0 0.20568 1 16674 16674 20.871 0 1 + 26422 16205 17492 17498 26087 26087 0.05785187271760606 LGRKDFWRKMF 11 Unmodified _LGRKDFWRKMF_ 0 0 0 nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant;ENST00000489023.5_1_2:210693994-210832362:+|nuORF;UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant;UNC80|p.N2032*|1|0.42|ENSG00000144406|chr2:209936855-209936856|-/T|frameshift_variant nc|ENSG00000144406|Q8N2C7-4|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.403564453125 2 742.403181 1482.79181 NaN NaN NaN NaN NaN NaN NaN 93.654 1 93.654 93.154 94.154 0 0 0 0 0.2367 1 18329 18329 2.9952 1.5133 1 26423 4551 17493 17499 26088 26088 0.06972467390301063 LGRLCSLPP 9 Unmodified _LGRLCSLPP_ 0 0 0 REV__nc|ENSG00000140332|Q04726-4|TLE3 REV__nc|ENSG00000140332|Q04726-4|TLE3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7320861816406 2 478.273312 954.532072 0.077821 3.722E-05 -0.23848 -0.00011406 -0.16066 -7.6839E-05 478.27313522321174 57.946 0.27277 54.741 54.612 54.885 -3.2052 11 7 2 0 0 0 0.8319 1 10778 10778 12.532 12.532 1 304960 + 26424 24069 17494 17500 26089 26089 0.05298721779342941 LGRRAEDL 8 Unmodified _LGRRAEDL_ 0 0 0 nc|ENSG00000172197|Q6ZNC8-3|MBOAT1;nc|ENSG00000172197|Q6ZNC8-2|MBOAT1;MBOAT1|p.L444Wfs*20|1|0.1|ENSG00000172197|chr6:20109628-20109628|A/-|frameshift_variant;ENSG00000172197|ENST00000324607|MBOAT1 nc|ENSG00000172197|Q6ZNC8-3|MBOAT1 nc|ENSG00000172197|Q6ZNC8-3|MBOAT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.249755859375 2 465.261791 928.509028 NaN NaN NaN NaN NaN NaN NaN 99.89 1 95.901 95.401 96.401 -3.9895 0 0 0 0.20568 1 19183 19183 20.871 1.4322 1 26425 6198 17495 17501 26090 26090 0.04191418986215467 LGRRQAAVSPP 11 Unmodified _LGRRQAAVSPP_ 0 0 0 ENST00000263095.10_1_19:57702998-57703274:+|nuORF ENST00000263095.10_1_19:57702998-57703274:+|nuORF ENST00000263095.10_1_19:57702998-57703274:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3373413085938 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 176.19 1 171.4 170.9 171.9 -4.7898 0 0 0 0.2367 1 36025 36025 2.9952 1.3426 1 26426 8321 17496 17502 26091 26091 0.08778730240078403 LGRRRRHK 8 Unmodified _LGRRRRHK_ 0 0 0 REV__ENST00000575334.5_3_16:4466638-4470487:-|nuORF REV__ENST00000575334.5_3_16:4466638-4470487:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.23236083984375 3 360.23208 1077.67441 NaN NaN NaN NaN NaN NaN NaN 68.547 1 65.011 64.511 65.511 -3.5362 0 0 0 0.21486 1 12886 12886 1.8442 0.10196 1 + 26427 23183 17497 17503 26092 26092 0.13868115356399358 LGRRRRHK 8 Unmodified _LGRRRRHK_ 0 0 0 REV__ENST00000575334.5_3_16:4466638-4470487:-|nuORF REV__ENST00000575334.5_3_16:4466638-4470487:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2212829589844 3 360.23208 1077.67441 NaN NaN NaN NaN NaN NaN NaN 68.571 1 65.035 64.535 65.535 -3.5362 0 0 0 0.21486 1 12891 12891 1.8442 0.19162 1 + 26428 23183 17497 17503 26093 26093 0.13868115356399358 LGSAEEEEDD 10 Unmodified _LGSAEEEEDD_ 0 0 0 REV__NAA16|p.E630D|1|0.29|ENSG00000172766|chr13:41369226-41369226|A/T|missense_variant REV__NAA16|p.E630D|1|0.29|ENSG00000172766|chr13:41369226-41369226|A/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7904663085938 2 547.212023 1092.40949 0.11978 6.5544E-05 -0.073332 -4.0128E-05 0.046445 2.5415E-05 547.212463672909 143.24 0.13803 138.21 138.11 138.25 -5.0261 5 3 2 0 0 0 0.91149 1 27612 27612 3.9444 0 1 1616300 + 26429 23909 17498 17504 26094 26094 -0.13301532999707888 LGSAEEEEDD 10 Unmodified _LGSAEEEEDD_ 0 0 0 REV__NAA16|p.E630D|1|0.29|ENSG00000172766|chr13:41369226-41369226|A/T|missense_variant REV__NAA16|p.E630D|1|0.29|ENSG00000172766|chr13:41369226-41369226|A/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 547.212023 1092.40949 0.33082 0.00018103 -5.0732 -0.0027761 -4.7424 -0.0025951 547.2076979634439 137.97 0.14198 137.97 137.9 138.04 0 -0.12129 -0.0037255 NaN 3.9444 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1791500 + 26430 23909 17498 17504 -0.13301532999707888 LGSALLVHP 9 Unmodified _LGSALLVHP_ 0 0 0 ENSG00000214013|ENST00000318010|GANC ENSG00000214013|ENST00000318010|GANC ENSG00000214013|ENST00000318010|GANC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7658386230469 2 453.774003 905.533452 -0.42897 -0.00019465 0.66973 0.00030391 0.24076 0.00010925 453.7742555679948 106 0.77005 101.74 101.34 102.11 -4.2638 56 21 3 0 0 0 0.52414 1 20925 20925 18.135 1.1927 1 8829900 26431 7716 17499 17505 26095 26095 0.076906791397505 LGSAPLVKM 9 Unmodified _LGSAPLVKM_ 0 0 0 REV__ENSG00000137674|ENST00000260228|MMP20 REV__ENSG00000137674|ENST00000260228|MMP20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.239501953125 2 458.270238 914.525924 NaN NaN NaN NaN NaN NaN NaN 43.925 1 43.925 43.425 44.425 0 0 0 0 0.23508 1 8231 8231 11.64 0 1 + 26432 16403 17500 17506 26096 26096 0.06524203547826346 LGSAPSEKGL 10 Unmodified _LGSAPSEKGL_ 0 0 0 REV__ENST00000354619.9_1_1:236433277-236445243:-|nuORF REV__ENST00000354619.9_1_1:236433277-236445243:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2410583496094 2 479.763832 957.513111 0.047665 2.2868E-05 0.11291 5.4169E-05 0.16057 7.7037E-05 479.7639539988803 50.252 0.88043 47.209 46.719 47.6 -3.0429 118 25 6 0 0 0 0.40256 1 9229 9229 30.637 4.6158 1 227000000 + 26433 20780 17501 17507 26097 26097 0.032654636892857525 LGSDPLSP 8 Unmodified _LGSDPLSP_ 0 0 0 REV__ENST00000254719.9_1_17:1792018-1792054:+|nuORF REV__ENST00000254719.9_1_17:1792018-1792054:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.410400390625 1 785.40396 784.396684 0.7994 0.00062785 0.85696 0.00067306 1.6564 0.0013009 785.4046749014586 111.29 0.8375 107.06 106.52 107.35 -4.2289 37 23 2 0 0 0 0.6199 1 21332 21332 20.871 6.2895 1 2695800 + 26434 20123 17502 17508 26098 26098 -0.004138548106197959 LGSEAREGP 9 Unmodified _LGSEAREGP_ 0 0 0 REV__ENST00000287934.3_1_7:90894005-90894200:+|nuORF REV__ENST00000287934.3_1_7:90894005-90894200:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2288818359375 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 64.614 1 64.614 64.114 65.114 0 0 0 0 0.18966 1 12441 12441 0.40827 0.15679 1 + 26435 20344 17503 17509 26099 26099 -0.0148856652166387 LGSEAREGP 9 Unmodified _LGSEAREGP_ 0 0 0 REV__ENST00000287934.3_1_7:90894005-90894200:+|nuORF REV__ENST00000287934.3_1_7:90894005-90894200:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2284851074219 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 67.924 1 64.815 64.315 65.315 -3.1086 0 0 0 0.17505 1 13181 13181 0.12781 0 1 + 26436 20344 17503 17509 26100 26100 -0.0148856652166387 LGSEAREGP 9 Unmodified _LGSEAREGP_ 0 0 0 REV__ENST00000287934.3_1_7:90894005-90894200:+|nuORF REV__ENST00000287934.3_1_7:90894005-90894200:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2378845214844 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 79.7 1 76.19 75.69 76.69 -3.5102 0 0 0 0.16428 1 15566 15566 28.487 4.4663 1 + 26437 20344 17503 17509 26101 26101 -0.0148856652166387 LGSFEEQF 8 Unmodified _LGSFEEQF_ 0 0 0 REV__ENSG00000068097|ENST00000184956|HEATR6 REV__ENSG00000068097|ENST00000184956|HEATR6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72198486328125 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 151.91 1 151.91 151.41 152.41 0 0 0 0 0.2074 1 30425 30425 19.439 0 1 + 26438 14222 17504 17510 26102 26102 -0.05078487127468634 LGSFEEQF 8 Unmodified _LGSFEEQF_ 0 0 0 REV__ENSG00000068097|ENST00000184956|HEATR6 REV__ENSG00000068097|ENST00000184956|HEATR6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7410583496094 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 152.01 1 152.01 151.51 152.51 0 0 0 0 0.19492 1 30447 30447 26.341 1.6674 1 + 26439 14222 17504 17510 26103 26103 -0.05078487127468634 LGSFRRLLAF 10 Unmodified _LGSFRRLLAF_ 0 0 0 REV__ENST00000446495.1_1_X:115826922-115828007:-|nuORF REV__ENST00000446495.1_1_X:115826922-115828007:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.25244140625 2 590.353483 1178.69241 NaN NaN NaN NaN NaN NaN NaN 69.153 1 65.762 65.262 66.262 -3.3903 0 0 0 0.22588 1 13071 13071 4.3292 0 1 + 26440 21762 17505 17511 26104 26104 0.11021392767906946 LGSGDLPWEI 10 Unmodified _LGSGDLPWEI_ 0 0 0 HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|27|2|sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|27|2|sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|27|2|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.774658203125 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 17.139 1 15.625 15.125 16.125 -1.5148 0 0 0 0.22588 1 2470 2470 3.5965 0 1 26441 11896 17506 17512 26105 26105 -2.2671392343909247E-05 LGSIEGAGSI 10 Unmodified _LGSIEGAGSI_ 0 0 0 REV__ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant REV__ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74725341796875 2 452.242732 902.470912 -0.15127 -6.8412E-05 -0.41931 -0.00018963 -0.57059 -0.00025804 452.24269029067585 79.49 3.0015 75.814 75.267 78.268 -3.676 250 85 5 0 0 0 0.29353 1 15244 15244 37.974 1.847 1 714570000 + 26442 12912 17507 17513 26106 26106 0.0157748828091826 LGSILLPGH 9 Unmodified _LGSILLPGH_ 0 0 0 REV__ENST00000398258.7_1_3:107774387-107777202:-|nuORF REV__ENST00000398258.7_1_3:107774387-107777202:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7606201171875 2 453.774003 905.533452 -0.070398 -3.1945E-05 0.26562 0.00012053 0.19522 8.8586E-05 453.77410896555483 80.6 0.51509 76.761 76.498 77.013 -3.8392 28 14 2 0 0 0 0.32442 1 15280 15280 4.7159 0 1 1377400 + 26443 19279 17508 17514 26107 26107 0.07690679139761869 LGSIREILG 9 Unmodified _LGSIREILG_ 0 0 0 tr|U7T3R1|U7T3R1_FUSNUIon-translocatingoxidoreductasecomplexsubunitEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfEPE=3SV=1 tr|U7T3R1|U7T3R1_FUSNUIon-translocatingoxidoreductasecomplexsubunitEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfEPE=3SV=1 tr|U7T3R1|U7T3R1_FUSNUIon-translocatingoxidoreductasecomplexsubunitEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfEPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74261474609375 2 479.290017 956.565481 -0.49908 -0.0002392 0.24028 0.00011516 -0.2588 -0.00012404 479.29006980731344 23.029 0.23303 21.241 21.091 21.324 -1.7886 10 6 2 0 0 0 0.84208 1 3698 3698 3.9444 0 1 305770 26444 26416 17509 17515 26108 26108 0.08546046822903008 LGSLPQEAF 9 Unmodified _LGSLPQEAF_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2532653808594 2 481.2531 960.491647 -0.87425 -0.00042074 0.98823 0.00047559 0.11398 5.4852E-05 481.2535485202467 20.781 0.55335 19.06 18.836 19.39 -1.7211 29 15 3 0 0 0 0.55979 1 3261 3261 15.847 4.2069 1 3892500 26445 2455 17510 17516 26109 26109 0.009820786605587273 LGSLRQLY 8 Unmodified _LGSLRQLY_ 0 0 0 REV__ENSG00000116260|ENST00000367602|QSOX1 REV__ENSG00000116260|ENST00000367602|QSOX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1859130859375 3 317.187032 948.539266 NaN NaN NaN NaN NaN NaN NaN 74.932 1 71.568 71.068 72.068 -3.3643 0 0 0 0.21486 1 14623 14623 1.6526 0 1 + 26446 15477 17511 17517 26110 26110 0.06293777651410437 LGSLSVVLGA 10 Unmodified _LGSLSVVLGA_ 0 0 0 REV__INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant REV__INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23870849609375 2 458.279118 914.543683 -0.085554 -3.9208E-05 -1.0957 -0.00050216 -1.1813 -0.00054136 458.27906387236567 81.647 1.0347 78.09 77.791 78.826 -3.557 41 29 3 0 0 0 0.48338 1 15967 15967 32.305 10.559 1 782900 + 26447 18940 17512 17518 26111 26111 0.08299242074338053 LGSPEEEEEEL 11 Unmodified _LGSPEEEEEEL_ 0 0 0 REV__L1TD1|p.Q683Hfs*3|1|0.25|ENSG00000240563|chr1:62210822-62210823|AG/-|frameshift_variant REV__L1TD1|p.Q683Hfs*3|1|0.25|ENSG00000240563|chr1:62210822-62210823|AG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7504272460938 2 630.77753 1259.54051 NaN NaN NaN NaN NaN NaN NaN 143.06 1 138.03 137.53 138.53 -5.0261 0 0 0 0.22862 1 27578 27578 9.3831 0.63772 1 + 26448 19781 17513 17519 26112 26112 -0.07888142351634997 LGSQLPLYPQ 10 Unmodified _LGSQLPLYPQ_ 0 0 0 ENSG00000070444|ENST00000174618|MNT ENSG00000070444|ENST00000174618|MNT ENSG00000070444|ENST00000174618|MNT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.1287841796875 3 372.541363 1114.60226 -0.35335 -0.00013164 0.50118 0.00018671 0.14782 5.507E-05 372.54150245414996 70.641 0.86537 70.641 70.242 71.107 0 63 24 3 0 0 0 0.91149 1 13648 13648 0.69767 0 1 10261000 26449 1431 17514 17520 26113 26113 0.04954298648794975 LGSQVAVLS 9 Unmodified _LGSQVAVLS_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2170104980469 2 437.255643 872.496732 -0.59346 -0.0002595 0.58861 0.00025737 -0.0048576 -2.124E-06 437.25579414847624 109.15 0.53004 104.77 104.54 105.07 -4.3776 29 14 3 0 0 0 0.15214 1 21487 21487 43.858 0 1 1634700 + 26450 14524 17515 17521 26114 26114 0.05538382523195651 LGSQVAVLS 9 Unmodified _LGSQVAVLS_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21588134765625 2 437.255643 872.496732 -0.21817 -9.5397E-05 0.12444 5.4412E-05 -0.093731 -4.0984E-05 437.25562325007854 109.41 0.62866 104.95 104.64 105.27 -4.4518 31 17 2 0 0 0 0.057505 1 20992 20992 68.081 0 1 1052700 + 26451 14524 17515 17521 26115 26115 0.05538382523195651 LGSQVAVLS 9 Unmodified _LGSQVAVLS_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 437.255643 872.496732 -0.59346 -0.0002595 0.58861 0.00025737 -0.0048576 -2.124E-06 437.25579414847624 109.15 0.53004 104.77 104.54 105.07 -4.3776 -0.090853 0.00022233 NaN 68.081 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1634700 + 26452 14524 17515 17521 0.05538382523195651 LGSQVAVLS 9 Unmodified _LGSQVAVLS_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 437.255643 872.496732 -0.21817 -9.5397E-05 0.12444 5.4412E-05 -0.093731 -4.0984E-05 437.25562325007854 109.41 0.62866 104.95 104.64 105.27 -4.4518 0.090853 -0.00018359 NaN 68.081 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1052700 + 26453 14524 17515 17521 0.05538382523195651 LGSRAITDP 9 Unmodified _LGSRAITDP_ 0 0 0 BIRC6|p.V4012A|1|0.17|ENSG00000115760|chr2:32529765-32529765|T/C|missense_variant BIRC6|p.V4012A|1|0.17|ENSG00000115760|chr2:32529765-32529765|T/C|missense_variant BIRC6|p.V4012A|1|0.17|ENSG00000115760|chr2:32529765-32529765|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2378234863281 2 465.256174 928.497795 1.093 0.00050851 -0.47026 -0.00021879 0.62271 0.00028972 465.2560872561363 25.435 0.31536 23.786 23.58 23.896 -1.6482 13 8 3 0 0 0 0.71527 1 4449 4449 19.257 5.3509 1 726380 26454 320 17516 17522 26116 26116 0.030685968920693085 LGSRELASP 9 Unmodified _LGSRELASP_ 0 0 0 REV__ENST00000429210.1_1:206135358-206135544:-|nuORF REV__ENST00000429210.1_1:206135358-206135544:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2561950683594 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 25.25 1 23.716 23.216 24.216 -1.5342 0 0 0 0.22621 1 4140 4140 15.847 0 1 + 26455 21597 17517 17523 26117 26117 0.030685968920806772 LGSRHWHWH 9 Unmodified _LGSRHWHWH_ 0 0 0 ENST00000567542.5_1_16:68358563-68373232:+|nuORF;ENST00000566341.5_1_16:68349943-68362985:+|nuORF ENST00000567542.5_1_16:68358563-68373232:+|nuORF ENST00000567542.5_1_16:68358563-68373232:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.29962158203125 3 405.868808 1214.58459 -0.36525 -0.00014824 -1.8587 -0.00075438 -2.2239 -0.00090263 405.86803452501914 17.688 0.27271 16.377 16.239 16.511 -1.3109 11 7 2 0 0 0 0.8825 1 2838 2838 2.7352 0.23671 1 369090 26456 11366 17518 17524 26118 26118 -0.014115590428218638 LGSRHWHWH 9 Unmodified _LGSRHWHWH_ 0 0 0 ENST00000567542.5_1_16:68358563-68373232:+|nuORF;ENST00000566341.5_1_16:68349943-68362985:+|nuORF ENST00000567542.5_1_16:68358563-68373232:+|nuORF ENST00000567542.5_1_16:68358563-68373232:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 405.868808 1214.58459 -0.084715 -3.4383E-05 -1.3543 -0.00054966 -1.439 -0.00058405 405.8683503748795 16.422 0.23849 16.422 16.269 16.507 0 0.044868 3.2528E-05 NaN 2.7352 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 456500 26457 11366 17518 17524 -0.014115590428218638 LGSRHWHWH 9 Unmodified _LGSRHWHWH_ 0 0 0 ENST00000567542.5_1_16:68358563-68373232:+|nuORF;ENST00000566341.5_1_16:68349943-68362985:+|nuORF ENST00000567542.5_1_16:68358563-68373232:+|nuORF ENST00000567542.5_1_16:68358563-68373232:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 405.868808 1214.58459 -0.44575 -0.00018092 -1.4524 -0.00058949 -1.8982 -0.0007704 405.868158849732 17.675 0.20311 16.402 16.283 16.487 -1.2722 0.024984 -8.6943E-05 NaN 2.7352 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 379940 26458 11366 17518 17524 -0.014115590428218638 LGSRHWHWH 9 Unmodified _LGSRHWHWH_ 0 0 0 ENST00000567542.5_1_16:68358563-68373232:+|nuORF;ENST00000566341.5_1_16:68349943-68362985:+|nuORF ENST00000567542.5_1_16:68358563-68373232:+|nuORF ENST00000567542.5_1_16:68358563-68373232:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 405.868808 1214.58459 -1.73 -0.00070214 -0.71154 -0.00028879 -2.4415 -0.00099094 405.868527150891 17.823 0.21467 16.308 16.148 16.363 -1.5148 -0.069213 0.00081514 NaN 2.7352 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 235000 26459 11366 17518 17524 -0.014115590428218638 LGSSLLMGH 9 Unmodified _LGSSLLMGH_ 0 0 0 REV__nc|ENSG00000127980|O43933-2|PEX1 REV__nc|ENSG00000127980|O43933-2|PEX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2290344238281 2 457.741845 913.469137 NaN NaN NaN NaN NaN NaN NaN 46.914 1 43.972 43.472 44.472 -2.9421 0 0 0 0.22621 1 8536 8536 15.847 1.2655 1 + 26460 15908 17519 17525 26119 26119 0.008941559913068886 LGSSLSHSQ 9 Unmodified _LGSSLSHSQ_ 0 0 0 ENST00000582874.1_1_17:37809793-37814734:+|nuORF;ENST00000488876.5_1_17:37809763-37814321:+|nuORF;ENST00000583582.5_1_17:37809763-37814496:+|nuORF;ENST00000484773.6_1_17:37809763-37814894:+|nuORF;nc|ENSG00000131748|Q14849-2|STARD3;nc|ENSG00000131748|Q14849-3|STARD3;ENSG00000131748|ENST00000336308|STARD3 ENST00000582874.1_1_17:37809793-37814734:+|nuORF ENST00000582874.1_1_17:37809793-37814734:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2293701171875 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 124.19 1 119.46 118.96 119.96 -4.731 0 0 0 0.23508 1 23852 23852 11.64 0.81637 1 26461 3692 17520 17526 26120 26120 -0.0148856652166387 LGSSPLEQE 9 Unmodified _LGSSPLEQE_ 0 0 0 nc|ENSG00000181355|Q8IZS5|OFCC1;nc|ENSG00000181355|Q8IZS5-2|OFCC1 nc|ENSG00000181355|Q8IZS5|OFCC1 nc|ENSG00000181355|Q8IZS5|OFCC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2399597167969 2 480.237647 958.460741 -0.11443 -5.4955E-05 0.025768 1.2375E-05 -0.088665 -4.258E-05 480.2376564042504 49.77 0.96036 46.763 46.416 47.376 -3.0068 80 27 4 0 0 0 0.52414 1 9211 9211 18.135 0 1 16098000 26462 12497 17521 17527 26121 26121 -0.020151194443315035 LGSSVSIG 8 Unmodified _LGSSVSIG_ 0 0 0 REV__FOXN3|p.Y117Tfs*21|1|0.14|ENSG00000053254|chr14:89412129-89412129|G/-|frameshift_variant REV__FOXN3|p.Y117Tfs*21|1|0.14|ENSG00000053254|chr14:89412129-89412129|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20147705078125 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 68.411 1 65.02 64.52 65.52 -3.3903 0 0 0 0.21486 1 12913 12913 6.3541 0 1 + 26463 23549 17522 17528 26122 26122 0.01566162534970772 LGSTDRRKRD 10 Unmodified _LGSTDRRKRD_ 0 0 0 REV__ENSG00000100941|ENST00000216832|PNN REV__ENSG00000100941|ENST00000216832|PNN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2838745117188 2 602.331267 1202.64798 NaN NaN NaN NaN NaN NaN NaN 158.78 1 153.51 153.01 154.01 -5.2748 0 0 0 0.22588 1 30819 30819 6.2058 0.013936 1 + 26464 14750 17523 17529 26123 26123 0.05476336883748445 LGSTGKSSL 9 Unmodified _LGSTGKSSL_ 0 0 0 nc|ENSG00000166863|Q9UHF0-2|TAC3 nc|ENSG00000166863|Q9UHF0-2|TAC3 nc|ENSG00000166863|Q9UHF0-2|TAC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2362365722656 2 425.23745 848.460347 NaN NaN NaN NaN NaN NaN NaN 145.28 1 140.62 140.12 141.12 -4.6694 0 0 0 0.23508 1 28794 28794 8.5933 0 1 26465 12443 17524 17530 26124 26124 0.030055056264700397 LGSVASEWI 9 Unmodified _LGSVASEWI_ 0 0 0 ENST00000493271.1_1_2:96945134-96947649:-|nuORF ENST00000493271.1_1_2:96945134-96947649:-|nuORF ENST00000493271.1_1_2:96945134-96947649:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7862854003906 2 481.2531 960.491647 -0.31618 -0.00015216 0.59471 0.00028621 0.27854 0.00013405 481.253289248104 62.129 1.0714 62.129 61.768 62.839 0 55 30 3 0 0 0 0.15214 2 11961 11952;11961 43.858 3.901 1 4036100 26466 10545 17525 17531 26125;26126 26126 0.00982078660570096 LGSVASEWI 9 Unmodified _LGSVASEWI_ 0 0 0 ENST00000493271.1_1_2:96945134-96947649:-|nuORF ENST00000493271.1_1_2:96945134-96947649:-|nuORF ENST00000493271.1_1_2:96945134-96947649:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77972412109375 2 481.2531 960.491647 0.054447 2.6203E-05 0.44289 0.00021314 0.49734 0.00023935 481.2532559292357 65.088 1.1882 62.041 61.522 62.71 -3.047 72 34 3 0 0 0 0.049627 3 12596 12568;12595;12596 71.134 22.788 1 3888300 26467 10545 17525 17531 26127;26128;26129 26129 0.00982078660570096 LGSVASEWI 9 Unmodified _LGSVASEWI_ 0 0 0 ENST00000493271.1_1_2:96945134-96947649:-|nuORF ENST00000493271.1_1_2:96945134-96947649:-|nuORF ENST00000493271.1_1_2:96945134-96947649:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2532958984375 2 481.2531 960.491647 0.26363 0.00012687 0.08121 3.9083E-05 0.34484 0.00016596 481.2530308662671 65.487 0.95293 62.029 61.538 62.491 -3.4581 56 26 3 0 0 0 0.081765 2 12277 12218;12277 61.357 21.4 1 3376200 26468 10545 17525 17531 26130;26131 26131 0.00982078660570096 LGSVASEWI 9 Unmodified _LGSVASEWI_ 0 0 0 ENST00000493271.1_1_2:96945134-96947649:-|nuORF ENST00000493271.1_1_2:96945134-96947649:-|nuORF ENST00000493271.1_1_2:96945134-96947649:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2532043457031 2 481.2531 960.491647 0.23899 0.00011502 -0.011537 -5.5524E-06 0.22746 0.00010946 481.25311439314635 65.101 1.3335 61.818 61.317 62.65 -3.2832 66 38 2 0 0 0 0.13708 2 12212 12212;12262 46.021 7.8454 1 3279000 26469 10545 17525 17531 26132;26133 26132 0.00982078660570096 LGSVKSLEF 9 Unmodified _LGSVKSLEF_ 0 0 0 ENST00000544008.1_11:69061945-69156410:+|nuORF;ENST00000441339.2_11:69061897-69062793:+|nuORF ENST00000544008.1_11:69061945-69156410:+|nuORF ENST00000544008.1_11:69061945-69156410:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27587890625 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 136.34 1 131.7 131.2 132.2 -4.6399 0 0 0 0.23508 1 26903 26903 10.824 0.64053 1 26470 9891 17526 17532 26134 26134 0.04846938211710494 LGSWIEVYDY 10 Unmodified _LGSWIEVYDY_ 0 0 0 REV__TLL1|p.S683Y|1|0.35|ENSG00000038295|chr4:166065723-166065723|C/A|missense_variant REV__TLL1|p.S683Y|1|0.35|ENSG00000038295|chr4:166065723-166065723|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.763671875 2 622.795329 1243.5761 NaN NaN NaN NaN NaN NaN NaN 74.006 1 70.641 70.141 71.141 -3.3643 0 0 0 0.22569 1 14433 14433 15.847 2.8047 1 + 26471 14039 17527 17533 26135 26135 -0.03594015313319687 LGTCFARLY 9 Unmodified _LGTCFARLY_ 0 0 0 REV__nc|ENSG00000137822|Q9UGJ1|TUBGCP4 REV__nc|ENSG00000137822|Q9UGJ1|TUBGCP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2693481445312 2 522.27077 1042.52699 NaN NaN NaN NaN NaN NaN NaN 91.545 1 91.545 91.045 92.045 0 0 0 0 0.19451 1 17893 17893 0.40827 0 1 + 26472 16415 17528 17534 26136 26136 0.007424179167401235 LGTCFARLY 9 Unmodified _LGTCFARLY_ 0 0 0 REV__nc|ENSG00000137822|Q9UGJ1|TUBGCP4 REV__nc|ENSG00000137822|Q9UGJ1|TUBGCP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2693481445312 2 522.27077 1042.52699 NaN NaN NaN NaN NaN NaN NaN 91.554 1 91.554 91.054 92.054 0 0 0 0 0.21848 1 17894 17894 18.135 0 1 + 26473 16415 17528 17534 26137 26137 0.007424179167401235 LGTCFARLY 9 Unmodified _LGTCFARLY_ 0 0 0 REV__nc|ENSG00000137822|Q9UGJ1|TUBGCP4 REV__nc|ENSG00000137822|Q9UGJ1|TUBGCP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2824096679688 2 522.27077 1042.52699 -0.21757 -0.00011363 -1.3906 -0.00072626 -1.6082 -0.00083989 522.2691201721507 134.59 0.10634 129.95 129.88 129.98 -4.6399 4 2 2 0 0 0 0.8319 1 26532 26532 4.3292 0 1 747550 + 26474 16415 17528 17534 26138 26138 0.007424179167401235 LGTDLPKTA 9 Unmodified _LGTDLPKTA_ 0 0 0 REV__ENST00000476012.5_1_10:102741222-102743752:-|nuORF REV__ENST00000476012.5_1_10:102741222-102743752:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2385559082031 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 87.842 1 84.092 83.592 84.592 -3.7501 0 0 0 0.23508 1 16807 16807 6.7232 0 1 + 26475 20976 17529 17535 26139 26139 0.04662365177625816 LGTEKRRREP 10 Unmodified _LGTEKRRREP_ 0 0 0 REV__ENST00000456950.6_1_17:40821512-40828020:-|nuORF REV__ENST00000456950.6_1_17:40821512-40828020:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 621.3582763671875 2 621.357285 1240.70002 NaN NaN NaN NaN NaN NaN NaN 175.02 1 170.12 169.62 170.62 -4.8916 0 0 0 0.22588 1 34871 34871 7.2892 0 1 + 26476 14223 17530 17536 26140 26140 0.08929500297517734 LGTELSLLG 9 Unmodified _LGTELSLLG_ 0 0 0 ENST00000535028.5_1_9:140000303-140001810:+|nuORF;ENST00000480100.3_1_9:140000303-140000768:+|nuORF ENST00000535028.5_1_9:140000303-140001810:+|nuORF ENST00000535028.5_1_9:140000303-140001810:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.2459716796875 2 451.7633 901.512048 0.044461 2.0086E-05 0.095281 4.3044E-05 0.13974 6.313E-05 451.76325357570937 156.6 0.88513 151.81 151.42 152.31 -4.7885 58 24 3 0 0 0 0.37087 1 31121 31121 2.6312 0 1 7398200 26477 11013 17531 17537 26141 26141 0.05735249320389357 LGTESQGYNEY 11 Unmodified _LGTESQGYNEY_ 0 0 0 REV__ENSG00000166743|ENST00000520010|ACSM1 REV__ENSG00000166743|ENST00000520010|ACSM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7756958007812 2 630.772582 1259.53061 NaN NaN NaN NaN NaN NaN NaN 127.84 0.99999 123.05 122.55 123.55 -4.7958 0 0 0 0.19804 1 24538 24538 19.257 7.7623 1 + 26478 17867 17532 17538 26142 26142 -0.08877285566336468 LGTEVKDL 8 Unmodified _LGTEVKDL_ 0 0 0 PLAC9|p.G69D|1|0.27|ENSG00000189129|chr10:80144266-80144266|G/A|missense_variant PLAC9|p.G69D|1|0.27|ENSG00000189129|chr10:80144266-80144266|G/A|missense_variant PLAC9|p.G69D|1|0.27|ENSG00000189129|chr10:80144266-80144266|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2279357910156 2 437.74765 873.480748 0.15202 6.6546E-05 0.035821 1.568E-05 0.18784 8.2226E-05 437.7475592203478 111.95 0.70412 111.95 111.58 112.29 0 31 19 2 0 0 0 0.95284 1 22083 22083 2.3027 0 1 1712700 26479 12798 17533 17539 26143 26143 0.03894676286279264 LGTILTHTA 9 Unmodified _LGTILTHTA_ 0 0 0 REV__nc|ENSG00000204463|P46379-5|BAG6 REV__nc|ENSG00000204463|P46379-5|BAG6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 464.1634826660156 2 463.768917 925.523281 0.37102 0.00017207 -0.57661 -0.00026741 -0.20559 -9.5345E-05 463.76861636662665 42.242 0.90952 42.242 41.794 42.703 0 55 25 3 0 0 0 0.8319 1 7849 7849 7.9102 1.187 1 5315500 + 26480 19538 17534 17540 26144 26144 0.05754071414514783 LGTILTHTA 9 Unmodified _LGTILTHTA_ 0 0 0 REV__nc|ENSG00000204463|P46379-5|BAG6 REV__nc|ENSG00000204463|P46379-5|BAG6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 463.768917 925.523281 -0.091582 -4.2473E-05 -0.092562 -4.2927E-05 -0.18414 -8.54E-05 463.76881451723597 44.85 0.7428 42.06 41.605 42.348 -2.79 -0.060215 9.2576E-05 NaN 7.9102 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6075300 + 26481 19538 17534 17540 0.05754071414514783 LGTILTHTA 9 Unmodified _LGTILTHTA_ 0 0 0 REV__nc|ENSG00000204463|P46379-5|BAG6 REV__nc|ENSG00000204463|P46379-5|BAG6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 463.768917 925.523281 -0.069891 -3.2413E-05 -0.084014 -3.8963E-05 -0.15391 -7.1376E-05 463.7688114958012 44.817 0.63567 42.051 41.735 42.371 -2.7661 -0.068983 0.0001005 NaN 7.9102 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 5703400 + 26482 19538 17534 17540 0.05754071414514783 LGTSFKEF 8 Unmodified _LGTSFKEF_ 0 0 0 ENST00000369244.6_1_6:99374896-99375585:-|nuORF ENST00000369244.6_1_6:99374896-99375585:-|nuORF ENST00000369244.6_1_6:99374896-99375585:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 89.502 1 85.458 84.958 85.958 -4.0443 0 0 0 0.21486 1 17052 17052 1.8442 0 1 26483 9115 17535 17541 26145 26145 0.003546936318684857 LGTVRFGVI 9 Unmodified _LGTVRFGVI_ 0 0 0 nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11 nc|ENSG00000153066|Q6PKC3|TXNDC11 nc|ENSG00000153066|Q6PKC3|TXNDC11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24505615234375 2 481.295102 960.575651 NaN NaN NaN NaN NaN NaN NaN 141.94 1 137.07 136.57 137.57 -4.8678 0 0 0 0.23508 1 27386 27386 12.532 0 1 26484 4955 17536 17542 26146 26146 0.0937865454814073 LGVDKYVY 8 Unmodified _LGVDKYVY_ 0 0 0 tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1 tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1 tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7241516113281 2 478.758018 955.501483 -0.039212 -1.8773E-05 0.47564 0.00022772 0.43643 0.00020894 478.75676859093 43.091 0.87141 40.485 40.281 41.153 -2.606 54 24 3 0 0 0 0.56049 1 7889 7889 24.674 1.5255 1 3312400 26485 26388 17537 17543 26147 26147 0.02195266665944473 LGVEPDHSLN 10 Unmodified _LGVEPDHSLN_ 0 0 0 REV__nc|ENSG00000104044|Q04671-2|OCA2 REV__nc|ENSG00000104044|Q04671-2|OCA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2849731445312 2 540.769645 1079.52474 -0.03153 -1.7051E-05 0.47662 0.00025774 0.44509 0.00024069 540.7696783336779 64.919 0.38452 64.919 64.682 65.067 0 15 10 2 0 0 0 0.79872 1 12484 12484 13.906 3.0821 1 1785100 + 26486 14901 17538 17544 26148 26148 -0.011843392873743142 LGVISEKYIQ 10 Unmodified _LGVISEKYIQ_ 0 0 0 ENST00000259883.3_1_6:28249575-28249617:+|nuORF ENST00000259883.3_1_6:28249575-28249617:+|nuORF ENST00000259883.3_1_6:28249575-28249617:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.332763671875 2 575.329339 1148.64412 0.29019 0.00016695 1.255 0.00072204 1.5452 0.00088899 575.3299173716695 129.92 1.1406 129.92 129.2 130.34 0 70 32 3 0 0 0 0.6817 1 25679 25679 13.042 1.5478 1 10763000 26487 8276 17539 17545 26149 26149 0.07574854337326542 LGVKAVLAESY 11 Unmodified _LGVKAVLAESY_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3224487304688 2 575.329339 1148.64412 0.13546 7.7936E-05 1.1414 0.00065666 1.2768 0.0007346 575.3299327414528 134.15 1.1768 129.28 128.75 129.93 -4.8726 76 33 3 0 0 0 0.7348 1 25800 25800 9.3831 0.63772 1 8510100 26488 4008 17540 17546 26150 26150 0.07574854337326542 LGVRPSER 8 Unmodified _LGVRPSER_ 0 0 0 REV__nc|ENSG00000120318|Q8WWN8-2|ARAP3 REV__nc|ENSG00000120318|Q8WWN8-2|ARAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384338378906 2 457.264333 912.514114 0.15835 7.2408E-05 0.15649 7.1558E-05 0.31484 0.00014397 457.26432315164556 129.89 1.0555 125.12 124.58 125.63 -4.7725 48 29 2 0 0 0 0.69887 1 24997 24997 14.582 0 1 2503700 + 26489 15617 17541 17547 26151 26151 0.05435722848858404 LGVSADAVSVY 11 Unmodified _LGVSADAVSVY_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2828369140625 2 540.782222 1079.54989 0.22342 0.00012082 0.44867 0.00024263 0.67209 0.00036345 541.2819983880906 152.16 0.22093 146.93 146.81 147.03 -5.2365 6 5 2 0 0 0 0.57718 1 29504 29504 19.257 2.1441 1 920930 26490 4610 17542 17548 26152 26152 0.013297155152031337 LGVSAFQYGRY 11 Unmodified _LGVSAFQYGRY_ 0 0 0 tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1 tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1 tr|U7T041|U7T041_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00718PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7705688476562 2 630.822212 1259.62987 NaN NaN NaN NaN NaN NaN NaN 152.1 1 152.1 151.6 152.6 0 0 0 0 0.22862 1 30464 30464 9.3831 0 1 26491 26308 17543 17549 26153 26153 0.010442019090532995 LGVTGRPR 8 Unmodified _LGVTGRPR_ 0 0 0 sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3;sp|F5H8S6|US24_HCMVMTegumentproteinUS24OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US24PE=3SV=1 sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3 sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 429.25311279296875 2 428.261594 854.508634 0.1203 5.1518E-05 -0.035286 -1.5111E-05 0.08501 3.6407E-05 428.26148393168097 143.73 1.0646 143.73 143.21 144.27 0 69 30 3 0 0 0 0.77935 1 28633 28633 5.2307 2.3415 1 29524000 26492 25714 17544 17550 26154 26154 0.0755604405703707 LGVTGRPR 8 Unmodified _LGVTGRPR_ 0 0 0 sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3;sp|F5H8S6|US24_HCMVMTegumentproteinUS24OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US24PE=3SV=1 sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3 sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 428.261594 854.508634 -0.048195 -2.064E-05 0.097159 4.161E-05 0.048964 2.0969E-05 428.2615464911765 148.75 1.0357 144.04 143.61 144.65 -4.7095 0.031312 9.0614E-05 NaN 5.2307 82 28 5 NaN NaN NaN NaN 0 NaN NaN 0 38143000 26493 25714 17544 17550 0.0755604405703707 LGVTGRPR 8 Unmodified _LGVTGRPR_ 0 0 0 sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3;sp|F5H8S6|US24_HCMVMTegumentproteinUS24OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US24PE=3SV=1 sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3 sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 428.261594 854.508634 0.094036 4.0272E-05 -0.04349 -1.8625E-05 0.050546 2.1647E-05 428.2614622256861 149.38 1.1808 144.18 143.67 144.85 -5.1994 0.17793 -2.9856E-05 NaN 5.2307 89 33 4 NaN NaN NaN NaN 0 NaN NaN 0 39493000 26494 25714 17544 17550 0.0755604405703707 LGVTTASMSI 10 Unmodified _LGVTTASMSI_ 0 0 0 REV__ENSG00000173214|ENST00000671876|MFSD4B REV__ENSG00000173214|ENST00000671876|MFSD4B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25787353515625 2 490.260068 978.505582 NaN NaN NaN NaN NaN NaN NaN 117.85 1 113.44 112.94 113.94 -4.4088 0 0 0 0.22535 1 22677 22677 20.454 3.3671 1 + 26495 18339 17545 17551 26155 26155 0.015469880973569161 LGVVMHEM 8 Unmodified _LGVVMHEM_ 0 0 0 AKT2|p.Y341H|1|0.37|ENSG00000105221|chr19:40236044-40236044|A/G|missense_variant AKT2|p.Y341H|1|0.37|ENSG00000105221|chr19:40236044-40236044|A/G|missense_variant AKT2|p.Y341H|1|0.37|ENSG00000105221|chr19:40236044-40236044|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2381286621094 2 458.224974 914.435394 -0.11153 -5.1107E-05 -0.61839 -0.00028336 -0.72992 -0.00033447 458.22479740334745 41.964 0.56429 39.313 38.9 39.464 -2.651 27 15 2 0 0 0 0.64227 1 7467 7467 19.439 5.5329 1 734300 26496 115 17546 17552 26156 26156 -0.025245887720984683 LGWCQGGSI 9 Unmodified _LGWCQGGSI_ 0 0 0 REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23236083984375 2 460.71837 919.422187 0.21605 9.9538E-05 1.087 0.00050082 1.3031 0.00060036 460.7188543094701 96.94 0.73262 96.94 96.632 97.364 0 48 20 3 0 0 0 0.55758 1 19010 19010 18.135 5.6034 1 6864200 + 26497 20039 17547 17553 26157 26157 -0.04074703559831505 LGWGLTRL 8 Unmodified _LGWGLTRL_ 0 0 0 ENST00000397872.5_1_22:29946817-29949595:-|nuORF ENST00000397872.5_1_22:29946817-29949595:-|nuORF ENST00000397872.5_1_22:29946817-29949595:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2383728027344 2 458.27417 914.533787 NaN NaN NaN NaN NaN NaN NaN 130.33 1 125.56 125.06 126.06 -4.7725 0 0 0 0.20462 1 25081 25081 21.747 2.3076 1 26498 9476 17548 17554 26158 26158 0.07310098859602476 LGWNWFRF 8 Unmodified _LGWNWFRF_ 0 0 0 REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 376.0815124511719 3 375.859138 1124.55558 -0.28877 -0.00010854 -3.9761 -0.0014945 -4.2649 -0.001603 375.8578122799877 13.35 0.13886 13.35 13.272 13.411 0 7 3 3 0 0 0 0.7999 1 1913 1913 4.3292 1.334 1 196890 + 26499 20594 17549 17555 26159 26159 -0.0017109639184127445 LGWPQKRYR 9 Unmodified _LGWPQKRYR_ 0 0 0 REV__nc|ENSG00000023171|Q3KR37-3|GRAMD1B REV__nc|ENSG00000023171|Q3KR37-3|GRAMD1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.301025390625 2 602.340907 1202.66726 NaN NaN NaN NaN NaN NaN NaN 159.47 1 154.19 153.69 154.69 -5.2748 0 0 0 0.23508 1 30950 30950 11.64 4.0313 1 + 26500 13992 17550 17556 26160 26160 0.07403337965297396 LGWRDPRAR 9 Unmodified _LGWRDPRAR_ 0 0 0 REV__ENST00000335574.9_2_20:30157021-30157309:+|nuORF REV__ENST00000335574.9_2_20:30157021-30157309:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 376.0815124511719 3 376.212463 1125.61556 -0.28761 -0.0001082 -1.3315 -0.00050092 -1.6191 -0.00060913 376.21185150735965 13.36 0.1729 13.36 13.238 13.411 0 7 4 2 0 0 0 0.88211 1 1913 1913 2.9952 0.26005 1 359960 + 26501 20657 17551 17557 26161 26161 0.057775942713988115 LGWRKPRT 8 Unmodified _LGWRKPRT_ 0 0 0 ENST00000399543.1_1_5:43042205-43042844:+|nuORF ENST00000399543.1_1_5:43042205-43042844:+|nuORF ENST00000399543.1_1_5:43042205-43042844:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 507.80877685546875 2 507.303793 1012.59303 -0.20566 -0.00010433 0.60664 0.00030775 0.40099 0.00020342 507.8060511255197 153.82 0.10403 148.55 148.47 148.57 -5.2669 4 2 2 0 0 0 0.77935 1 29826 29826 5.2307 0.47466 1 1007200 26502 9499 17552 17558 26162 26162 0.08723994873787433 LGWSAVALY 9 Unmodified _LGWSAVALY_ 0 0 0 ENST00000597785.1_1_19:8441877-8454965:-|nuORF ENST00000597785.1_1_19:8441877-8454965:-|nuORF ENST00000597785.1_1_19:8441877-8454965:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2662658691406 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 80.865 1 77.026 76.526 77.526 -3.8392 0 0 0 0.23508 1 15350 15350 9.3474 0 1 26503 11678 17553 17559 26163 26163 0.027349729028514957 LGYFVCFL 8 Unmodified _LGYFVCFL_ 0 0 0 REV__KCNK5|p.D373Gfs*3|1|0.07|ENSG00000164626|chr6:39191274-39191275|-/TCCA|frameshift_variant REV__KCNK5|p.D373Gfs*3|1|0.07|ENSG00000164626|chr6:39191274-39191275|-/TCCA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2369384765625 2 481.246232 960.477911 NaN NaN NaN NaN NaN NaN NaN 113.99 1 109.67 109.17 110.17 -4.3136 0 0 0 0.23294 1 21954 21954 0.62683 0 1 + 26504 17697 17554 17560 26164 26164 -0.003908703722231621 LGYLFDEV 8 Unmodified _LGYLFDEV_ 0 0 0 REV__NIN|p.F243L|1|0.36|ENSG00000100503|chr14:50773033-50773033|G/T|missense_variant REV__NIN|p.F243L|1|0.36|ENSG00000100503|chr14:50773033-50773033|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74365234375 2 478.242201 954.469849 0.12762 6.1034E-05 0.22057 0.00010549 0.34819 0.00016652 478.24220017000096 152.12 0.74765 147.37 147.06 147.81 -4.7523 44 20 3 0 0 0 0.6199 1 30221 30221 20.871 0.45668 1 4582200 + 26505 24360 17555 17561 26165 26165 -0.009207260879975365 LGYLQKGK 8 Unmodified _LGYLQKGK_ 0 0 0 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7251892089844 2 453.774003 905.533452 -0.21652 -9.8252E-05 0.57517 0.000261 0.35865 0.00016275 453.7741775574409 80.483 0.65916 76.795 76.446 77.106 -3.6879 30 18 2 0 0 0 8448 1 15290 15290 0.063987 0 1 2279900 26506 3950 17556 17562 26166 26166 0.07690679139761869 LGYMLPGVL 9 Unmodified _LGYMLPGVL_ 0 0 0 REV__ENST00000553532.5_2_12:56827931-56827976:-|nuORF REV__ENST00000553532.5_2_12:56827931-56827976:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7724914550781 2 481.772614 961.530675 NaN NaN NaN NaN NaN NaN NaN 141.62 1 136.97 136.47 137.47 -4.6493 0 0 0 0.23048 1 27977 27977 14.582 0 1 + 26507 22963 17557 17563 26167 26167 0.048370876905892146 LGYRALESA 9 Unmodified _LGYRALESA_ 0 0 0 REV__IQGAP3|p.K181R|1|0.29|ENSG00000183856|chr1:156563630-156563630|T/C|missense_variant REV__IQGAP3|p.K181R|1|0.29|ENSG00000183856|chr1:156563630-156563630|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2664794921875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 90.931 1 87.153 86.653 87.653 -3.7779 0 0 0 0.18966 1 17404 17404 2.6312 2.0044 1 + 26508 23671 17558 17564 26168 26168 0.023328834091330464 LHAAREKRT 9 Unmodified _LHAAREKRT_ 0 0 0 REV__tr|U7T3V5|U7T3V5_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00273PE=4SV=1 REV__tr|U7T3V5|U7T3V5_FUSNUConjugaltransferproteinTraDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00273PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2660522460938 2 541.314889 1080.61522 NaN NaN NaN NaN NaN NaN NaN 140.6 1 135.61 135.11 136.11 -4.9877 0 0 0 0.23508 1 27060 27060 12.532 0.89125 1 + 26509 25378 17559 17565 26169 26169 0.0781417455157225 LHAIKYEAH 9 Unmodified _LHAIKYEAH_ 0 0 0 ENSG00000132612|ENST00000254950|VPS4A ENSG00000132612|ENST00000254950|VPS4A ENSG00000132612|ENST00000254950|VPS4A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2782592773438 2 541.293091 1080.57163 0.38903 0.00021058 1.8528 0.0010029 2.2418 0.0012135 541.2942056958445 160.5 0.17375 155.71 155.61 155.79 -4.7952 6 4 2 0 0 0 0.86532 1 31900 31900 8.5933 0 1 776200 26510 3748 17560 17566 26170 26170 0.03456565054420935 LHAITLLARS 10 Unmodified _LHAITLLARS_ 0 0 0 nc|ENSG00000226807|Q6ZUA9|MROH5 nc|ENSG00000226807|Q6ZUA9|MROH5 nc|ENSG00000226807|Q6ZUA9|MROH5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7799682617188 2 547.837665 1093.66078 NaN NaN NaN NaN NaN NaN NaN 144.15 1 139.21 138.71 139.71 -4.9445 0 0 0 0.22588 1 27835 27835 6.7232 0.51738 1 26511 12602 17561 17567 26171 26171 0.11769400013940867 LHAMFAKNWIY 11 Unmodified _LHAMFAKNWIY_ 0 0 0 REV__ENST00000478161.5_1_18:3722450-3874706:-|nuORF REV__ENST00000478161.5_1_18:3722450-3874706:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.240966796875 3 465.241031 1392.70126 NaN NaN NaN NaN NaN NaN NaN 41.851 1 39.216 38.716 39.716 -2.6348 0 0 0 0.22632 1 7820 7820 3.0723 2.4869 1 + 26512 22136 17562 17568 26172 26172 0.020619983420601784 LHAPAALG 8 Unmodified _LHAPAALG_ 0 0 0 REV__ENST00000452143.5_1_1:62902154-62905498:+|nuORF REV__ENST00000452143.5_1_1:62902154-62905498:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21826171875 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 58.516 1 55.606 55.106 56.106 -2.9105 0 0 0 0.23711 1 11241 11241 0.12286 0 1 + 26513 21815 17563 17569 26173 26173 0.038898788713822796 LHATDLLPV 9 Unmodified _LHATDLLPV_ 0 0 0 GAD2|p.A100V|1|0.09|ENSG00000136750|chr10:26219055-26219055|C/T|missense_variant GAD2|p.A100V|1|0.09|ENSG00000136750|chr10:26219055-26219055|C/T|missense_variant GAD2|p.A100V|1|0.09|ENSG00000136750|chr10:26219055-26219055|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.273193359375 2 489.784567 977.554582 0.27176 0.0001331 0.50728 0.00024846 0.77904 0.00038156 489.78454527432996 156.98 0.67712 152.2 151.84 152.52 -4.7885 29 18 2 0 0 0 0.32428 1 31185 31185 30.225 3.3412 1 1337700 26514 11835 17564 17570 26174 26174 0.06490644448615512 LHATDLLPV 9 Unmodified _LHATDLLPV_ 0 0 0 GAD2|p.A100V|1|0.09|ENSG00000136750|chr10:26219055-26219055|C/T|missense_variant GAD2|p.A100V|1|0.09|ENSG00000136750|chr10:26219055-26219055|C/T|missense_variant GAD2|p.A100V|1|0.09|ENSG00000136750|chr10:26219055-26219055|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.784567 977.554582 0.27597 0.00013516 -0.22005 -0.00010777 0.055922 2.739E-05 489.78445814570176 157.63 0.57111 152.34 152.22 152.79 -5.2854 0.073554 -0.00022583 NaN 30.225 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1619500 26515 11835 17564 17570 0.06490644448615512 LHCFLPSL 8 Unmodified _LHCFLPSL_ 0 0 0 nc|ENSG00000205683|Q92784-4|DPF3 nc|ENSG00000205683|Q92784-4|DPF3 nc|ENSG00000205683|Q92784-4|DPF3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2484436035156 2 465.249306 928.484059 NaN NaN NaN NaN NaN NaN NaN 141.69 1 137.04 136.54 137.54 -4.6493 0 0 0 0.21486 1 27993 27993 9.3474 0.75416 1 26516 12565 17565 17571 26175 26175 0.016956478592987878 LHCYLVDFCF 10 Unmodified _LHCYLVDFCF_ 0 0 0 REV__ENST00000473662.1_1_X:109462834-109560930:-|nuORF REV__ENST00000473662.1_1_X:109462834-109560930:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.748779296875 2 630.28302 1258.55149 NaN NaN NaN NaN NaN NaN NaN 44.873 1 42.083 41.583 42.583 -2.79 0 0 0 0.22588 1 8442 8442 7.2892 2.96 1 + 26517 13038 17566 17572 26176 26176 -0.06744689992069652 LHDATTPDPN 10 Unmodified _LHDATTPDPN_ 0 0 0 REV__DPYSL4|p.T318I|1|0.25|ENSG00000151640|chr10:132200497-132200497|C/T|missense_variant REV__DPYSL4|p.T318I|1|0.25|ENSG00000151640|chr10:132200497-132200497|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2673950195312 2 540.751453 1079.48835 -0.12327 -6.666E-05 0.34198 0.00018492 0.2187 0.00011826 540.7516519679272 24.85 0.47988 22.997 22.812 23.292 -1.8534 23 13 2 0 0 0 0.43819 1 4060 4060 0.20733 0 1 3228500 + 26518 13747 17567 17573 26177 26177 -0.04821216184109289 LHDFSYQSY 9 Unmodified _LHDFSYQSY_ 0 0 0 REV__ENSG00000187105|ENST00000553558|HEATR4 REV__ENSG00000187105|ENST00000553558|HEATR4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.1744079589844 3 387.173339 1158.49819 NaN NaN NaN NaN NaN NaN NaN 118.41 1 113.91 113.41 114.41 -4.502 0 0 0 0.23508 1 23349 23349 2.9952 0 1 + 26519 19076 17568 17574 26178 26178 -0.07472028178699475 LHDVSKFNH 9 Unmodified _LHDVSKFNH_ 0 0 0 REV__TADA3|p.D13N|1|0.25|ENSG00000171148|chr3:9791430-9791430|C/T|missense_variant REV__TADA3|p.D13N|1|0.25|ENSG00000171148|chr3:9791430-9791430|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.2273254394531 3 366.189324 1095.54614 NaN NaN NaN NaN NaN NaN NaN 57.58 1 54.686 54.186 55.186 -2.8944 0 0 0 0.23508 1 11052 11052 5.2969 0 1 + 26520 24766 17569 17575 26179 26179 0.002190905319821468 LHDYREVY 8 Unmodified _LHDYREVY_ 0 0 0 ENSG00000182261|ENST00000691676|NLRP10;NLRP10|p.R280Mfs*19|1|0.08|ENSG00000182261|chr11:7960773-7960774|-/CA|frameshift_variant;NLRP10|p.H474Mfs*7|1|0.12|ENSG00000182261|chr11:7960193-7960193|A/-|frameshift_variant ENSG00000182261|ENST00000691676|NLRP10 ENSG00000182261|ENST00000691676|NLRP10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.76953125 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 65.997 1 62.714 62.214 63.214 -3.2832 0 0 0 0.20378 1 12415 12415 22.453 6.6844 1 26521 6778 17570 17576 26180 26180 -0.023760180791896346 LHEAALVSGF 10 Unmodified _LHEAALVSGF_ 0 0 0 REV__ENST00000409185.5_1_2:131807108-131807216:-|nuORF REV__ENST00000409185.5_1_2:131807108-131807216:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2799072265625 2 522.279649 1042.54475 0.0051785 2.7046E-06 0.32586 0.00017019 0.33104 0.0001729 522.2795764528232 56.705 0.34563 56.705 56.536 56.882 0 15 9 2 0 0 0 0.664 1 10833 10833 14.838 2.3067 1 932180 + 26522 21404 17571 17577 26181 26181 0.025174564432290936 LHEEIDRV 8 Unmodified _LHEEIDRV_ 0 0 0 ENST00000368520.1_1_10:135345455-135368187:+|nuORF;ENSG00000130649|ENST00000252945|CYP2E1 ENST00000368520.1_1_10:135345455-135368187:+|nuORF ENST00000368520.1_1_10:135345455-135368187:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 505.7660217285156 2 505.766906 1009.51926 -0.18403 -9.3078E-05 -0.13915 -7.0377E-05 -0.32318 -0.00016345 505.7667284088682 44.452 0.53076 41.704 41.499 42.029 -2.7475 19 14 2 0 0 0 8448 1 8034 8034 1.7423 0 1 564210 26523 3622 17572 17578 26182 26182 0.014879819208090339 LHEEIDRV 8 Unmodified _LHEEIDRV_ 0 0 0 ENST00000368520.1_1_10:135345455-135368187:+|nuORF;ENSG00000130649|ENST00000252945|CYP2E1 ENST00000368520.1_1_10:135345455-135368187:+|nuORF ENST00000368520.1_1_10:135345455-135368187:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 505.766906 1009.51926 0.40154 0.00020309 -0.5981 -0.0003025 -0.19656 -9.9415E-05 505.76655316360166 41.802 0.42857 41.802 41.583 42.011 0 0.049069 -0.00023111 NaN 1.7423 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1057900 26524 3622 17572 17578 0.014879819208090339 LHEEIDRV 8 Unmodified _LHEEIDRV_ 0 0 0 ENST00000368520.1_1_10:135345455-135368187:+|nuORF;ENSG00000130649|ENST00000252945|CYP2E1 ENST00000368520.1_1_10:135345455-135368187:+|nuORF ENST00000368520.1_1_10:135345455-135368187:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 505.766906 1009.51926 -0.18403 -9.3078E-05 -0.13915 -7.0377E-05 -0.32318 -0.00016345 505.7667284088682 44.452 0.53076 41.704 41.499 42.029 -2.7475 -0.049069 0.00023314 NaN 1.7423 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 564210 26525 3622 17572 17578 0.014879819208090339 LHEISSYL 8 Unmodified _LHEISSYL_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2503356933594 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 125.5 1 120.91 120.41 121.41 -4.5984 0 0 0 0.19492 1 24743 24743 26.341 0.94196 1 + 26526 14487 17573 17579 26183 26183 0.00982078660570096 LHEKQKEEY 9 Unmodified _LHEKQKEEY_ 0 0 0 REV__SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant REV__SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2720947265625 2 602.303852 1202.59315 0.39212 0.00023618 -1.629 -0.00098116 -1.2369 -0.00074498 603.3032236009623 139.64 0.37927 139.64 139.47 139.85 0 18 10 3 0 0 0 0.60805 1 27752 27752 12.532 0 1 34105000 + 26527 17545 17574 17580 26184 26184 -4.094707514923357E-05 LHELALSVP 9 Unmodified _LHELALSVP_ 0 0 0 ENSG00000187135|ENST00000335523|VSTM2B ENSG00000187135|ENST00000335523|VSTM2B ENSG00000187135|ENST00000335523|VSTM2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2550964355469 2 489.784567 977.554582 0.27176 0.0001331 0.50728 0.00024846 0.77904 0.00038156 489.78454527432996 156.98 0.67712 152.2 151.84 152.52 -4.7885 29 18 2 0 0 0 0.62102 1 31156 31156 11.64 0 1 1337700 26528 7098 17575 17581 26185 26185 0.06490644448615512 LHELTDSH 8 Unmodified _LHELTDSH_ 0 0 0 REV__ARHGAP36|p.R346H|1|0.47|ENSG00000147256|chrX:131085669-131085669|G/A|missense_variant REV__ARHGAP36|p.R346H|1|0.47|ENSG00000147256|chrX:131085669-131085669|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.047119140625 3 317.82253 950.445759 -0.42399 -0.00013475 0.086864 2.7607E-05 -0.33712 -0.00010714 317.8225604928031 26.956 0.51398 26.956 26.702 27.216 0 23 14 2 0 0 0 1.0243 1 4744 4744 7.2892 0.56607 1 1936800 + 26529 13102 17576 17582 26186 26186 -0.031445665216665475 LHELYKYI 8 Unmodified _LHELYKYI_ 0 0 0 ENST00000485535.5_1_3:48445895-48454598:-|nuORF;nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1 ENST00000485535.5_1_3:48445895-48454598:-|nuORF ENST00000485535.5_1_3:48445895-48454598:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016906738281 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 117.69 1 117.69 117.19 118.19 0 0 0 0 0.21486 1 23183 23183 3.9444 0 1 26530 5498 17577 17583 26187 26187 0.05019217482708882 LHELYKYI 8 Unmodified _LHELYKYI_ 0 0 0 ENST00000485535.5_1_3:48445895-48454598:-|nuORF;nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1 ENST00000485535.5_1_3:48445895-48454598:-|nuORF ENST00000485535.5_1_3:48445895-48454598:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 118.12 1 118.12 117.62 118.62 0 0 0 0 0.21486 1 23268 23268 3.9444 0 1 26531 5498 17577 17583 26188 26188 0.05019217482708882 LHELYKYI 8 Unmodified _LHELYKYI_ 0 0 0 ENST00000485535.5_1_3:48445895-48454598:-|nuORF;nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1 ENST00000485535.5_1_3:48445895-48454598:-|nuORF ENST00000485535.5_1_3:48445895-48454598:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 90.895 1 87.035 86.535 87.535 -3.8595 0 0 0 0.21486 1 17787 17787 7.2892 0 1 26532 5498 17577 17583 26189 26189 0.05019217482708882 LHEPFLLY 8 Unmodified _LHEPFLLY_ 0 0 0 ENSG00000272886|ENST00000610213|DCP1A;nc|ENSG00000272886|Q9NPI6-2|DCP1A ENSG00000272886|ENST00000610213|DCP1A ENSG00000272886|ENST00000610213|DCP1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 516.7825927734375 2 516.28166 1030.54877 -0.24274 -0.00012532 -1.2574 -0.00064916 -1.5001 -0.00077448 516.2815316786631 47.699 0.24094 44.83 44.742 44.983 -2.869 8 6 2 0 0 0 0.69887 1 9022 9022 14.582 0 1 392170 26533 8007 17578 17584 26190 26190 0.03471545936963594 LHEPFLLY 8 Unmodified _LHEPFLLY_ 0 0 0 ENSG00000272886|ENST00000610213|DCP1A;nc|ENSG00000272886|Q9NPI6-2|DCP1A ENSG00000272886|ENST00000610213|DCP1A ENSG00000272886|ENST00000610213|DCP1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 516.28166 1030.54877 -0.57511 -0.00029692 -0.93023 -0.00048026 -1.5053 -0.00077718 516.2820820477161 47.944 0.17323 45.002 44.937 45.11 -2.9421 0.086255 0.00019964 NaN 14.582 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 507900 26534 8007 17578 17584 0.03471545936963594 LHEVHQIS 8 Unmodified _LHEVHQIS_ 0 0 0 nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB nc|ENSG00000114423|Q13191-3|CBLB nc|ENSG00000114423|Q13191-3|CBLB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7861328125 2 481.756341 961.498129 NaN NaN NaN NaN NaN NaN NaN 75.389 1 75.389 74.889 75.889 0 0 0 0 0.2074 1 14641 14641 19.439 1.304 1 26535 2789 17579 17585 26191 26191 0.015840166119460264 LHEVPRVWREY 11 Unmodified _LHEVPRVWREY_ 0 0 0 REV__CHRNA5|p.D214*|1|0.21|ENSG00000169684|chr15:78590023-78590024|-/T|frameshift_variant REV__CHRNA5|p.D214*|1|0.21|ENSG00000169684|chr15:78590023-78590024|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3907470703125 2 742.393867 1482.77318 NaN NaN NaN NaN NaN NaN NaN 56.121 1 52.931 52.431 53.431 -3.1895 0 0 0 0.22632 1 10393 10393 0.50596 0 1 + 26536 13431 17580 17586 26192 26192 0.05110629020100532 LHEYPSSF 8 Unmodified _LHEYPSSF_ 0 0 0 REV__nc|ENSG00000158966|Q5VU97-2|CACHD1 REV__nc|ENSG00000158966|Q5VU97-2|CACHD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.255126953125 2 490.229625 978.444697 NaN NaN NaN NaN NaN NaN NaN 153.86 1 148.63 148.13 149.13 -5.2209 0 0 0 0.21323 1 29822 29822 14.582 2.9414 1 + 26537 13231 17581 17587 26193 26193 -0.04538780890561611 LHFGFVPG 8 Unmodified _LHFGFVPG_ 0 0 0 REV__ENST00000248121.6_1_16:2043508-2043775:+|nuORF REV__ENST00000248121.6_1_16:2043508-2043775:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23541259765625 2 437.234513 872.454474 NaN NaN NaN NaN NaN NaN NaN 66.316 1 63.011 62.511 63.511 -3.3054 0 0 0 0.21486 1 12481 12481 6.3541 1.1234 1 + 26538 20102 17582 17588 26194 26194 0.013144519054776538 LHFGGGRRP 9 Unmodified _LHFGGGRRP_ 0 0 0 ENST00000476695.1_1_7:69289624-69364285:+|nuORF ENST00000476695.1_1_7:69289624-69364285:+|nuORF ENST00000476695.1_1_7:69289624-69364285:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 499.7809753417969 2 498.777942 995.541332 -0.040929 -2.0415E-05 -0.40925 -0.00020412 -0.45018 -0.00022454 498.7777288572966 27.121 0.65557 25.199 24.743 25.399 -1.9222 27 18 3 0 0 0 0.44856 1 4510 4510 0.12781 0.054551 1 1179400 26539 10294 17583 17589 26195 26195 0.04338251179899544 LHFGGGRRP 9 Unmodified _LHFGGGRRP_ 0 0 0 ENST00000476695.1_1_7:69289624-69364285:+|nuORF ENST00000476695.1_1_7:69289624-69364285:+|nuORF ENST00000476695.1_1_7:69289624-69364285:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 498.777942 995.541332 0.2471 0.00012325 -1.0236 -0.00051055 -0.7765 -0.0003873 498.7774558955057 25.318 0.51206 25.318 24.913 25.425 0 0.060718 0.00017477 NaN 0.12781 22 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2111500 26540 10294 17583 17589 0.04338251179899544 LHFGGGRRP 9 Unmodified _LHFGGGRRP_ 0 0 0 ENST00000476695.1_1_7:69289624-69364285:+|nuORF ENST00000476695.1_1_7:69289624-69364285:+|nuORF ENST00000476695.1_1_7:69289624-69364285:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 498.777942 995.541332 1.0225 0.00051 -1.8379 -0.00091672 -0.81544 -0.00040672 498.77694573665826 27.037 0.34785 25.255 24.96 25.308 -1.7821 -0.0024625 -0.00063757 NaN 0.12781 17 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1858700 26541 10294 17583 17589 0.04338251179899544 LHFNWMCPM 9 Unmodified _LHFNWMCPM_ 0 0 0 REV__ENST00000477837.5_1_1:157667700-157668266:-|nuORF REV__ENST00000477837.5_1_1:157667700-157668266:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2910461425781 3 393.502981 1177.48711 -0.067533 -2.6574E-05 0.10736 4.2246E-05 0.039826 1.5672E-05 393.50298744198113 34.001 1.1781 34.001 33.373 34.552 0 81 33 3 0 0 0 0.88211 1 6286 6286 2.9952 0 1 2325700 + 26542 22125 17584 17590 26196 26196 -0.0945316834984169 LHFWTLHFNLR 11 Unmodified _LHFWTLHFNLR_ 0 0 0 ENST00000357308.8_1_2:69552947-69553046:-|nuORF ENST00000357308.8_1_2:69552947-69553046:-|nuORF ENST00000357308.8_1_2:69552947-69553046:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.4024047851562 2 742.401496 1482.78844 NaN NaN NaN NaN NaN NaN NaN 53.035 1 53.035 52.535 53.535 0 0 0 0 0.23698 1 10090 10090 1.3295 0 1 26543 8979 17585 17591 26197 26197 0.06635540607976509 LHGCFDLC 8 Unmodified _LHGCFDLC_ 0 0 0 ENST00000421743.6_1_1:163044966-163045032:+|nuORF ENST00000421743.6_1_1:163044966-163045032:+|nuORF ENST00000421743.6_1_1:163044966-163045032:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7477722167969 2 454.193674 906.372794 NaN NaN NaN NaN NaN NaN NaN 22.104 1 20.63 20.13 21.13 -1.4742 0 0 0 0.21486 1 3763 3763 6.3541 0 1 26544 9672 17586 17592 26198 26198 -0.08413734840303277 LHGCLPAY 8 Unmodified _LHGCLPAY_ 0 0 0 ENST00000216044.9_1_22:39126956-39127310:+|nuORF ENST00000216044.9_1_22:39126956-39127310:+|nuORF ENST00000216044.9_1_22:39126956-39127310:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21673583984375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 118.65 1 114.04 113.54 114.54 -4.6106 0 0 0 0.21486 1 22767 22767 6.3541 0 1 26545 8105 17587 17593 26199 26199 -0.019854982088986617 LHGIEAEEAP 10 Unmodified _LHGIEAEEAP_ 0 0 0 nc|ENSG00000121406|Q6P9A3-2|ZNF549;ZNF549|p.R543Dfs*94|1|0.13|ENSG00000121406|chr19:57538626-57538626|A/-|frameshift_variant;ENSG00000121406|ENST00000376233|ZNF549 nc|ENSG00000121406|Q6P9A3-2|ZNF549 nc|ENSG00000121406|Q6P9A3-2|ZNF549 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2637939453125 2 533.264196 1064.51384 0.43265 0.00023072 0.091479 4.8782E-05 0.52413 0.0002795 533.2643246517588 53.524 0.42916 50.436 50.178 50.607 -3.0876 16 11 2 0 0 0 0.664 2 9878 9831;9878 14.838 1.9657 1 1655800 26546 3178 17588 17594 26200;26201 26201 -0.015837416616705013 LHGKLGVEEP 10 Unmodified _LHGKLGVEEP_ 0 0 0 REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 113.41 1 109.14 108.64 109.64 -4.2725 0 0 0 0.22588 1 21839 21839 6.1918 0.89496 1 + 26547 12988 17589 17595 26202 26202 0.0461712798901317 LHGLEILNS 9 Unmodified _LHGLEILNS_ 0 0 0 ENST00000480233.1_1_11:113235406-113237019:+|nuORF;ENSG00000149292|ENST00000529221|TTC12 ENST00000480233.1_1_11:113235406-113237019:+|nuORF ENST00000480233.1_1_11:113235406-113237019:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.9993591308594 3 332.522192 994.544745 -0.78312 -0.00026041 0.76812 0.00025542 -0.015003 -4.9889E-06 332.5223815791629 46.641 0.72908 43.775 43.441 44.17 -2.8666 60 20 4 0 0 0 0.8799 1 8570 8570 4.897 0 1 9215000 26548 4783 17590 17596 26203 26203 0.04725456443247822 LHGLEILNS 9 Unmodified _LHGLEILNS_ 0 0 0 ENST00000480233.1_1_11:113235406-113237019:+|nuORF;ENSG00000149292|ENST00000529221|TTC12 ENST00000480233.1_1_11:113235406-113237019:+|nuORF ENST00000480233.1_1_11:113235406-113237019:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 332.522192 994.544745 -0.16135 -5.3654E-05 0.20455 6.8016E-05 0.043191 1.4362E-05 332.5222314154493 43.829 0.65732 43.829 43.467 44.124 0 0.04992 -6.2571E-05 NaN 4.897 54 18 4 NaN NaN NaN NaN 0 NaN NaN 0 12003000 26549 4783 17590 17596 0.04725456443247822 LHGLEILNS 9 Unmodified _LHGLEILNS_ 0 0 0 ENST00000480233.1_1_11:113235406-113237019:+|nuORF;ENSG00000149292|ENST00000529221|TTC12 ENST00000480233.1_1_11:113235406-113237019:+|nuORF ENST00000480233.1_1_11:113235406-113237019:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 332.522192 994.544745 -0.31118 -0.00010347 0.29088 9.6725E-05 -0.020298 -6.7496E-06 332.5222545909518 46.544 0.69338 43.703 43.347 44.04 -2.8409 -0.075924 2.3557E-05 NaN 4.897 60 19 4 NaN NaN NaN NaN 0 NaN NaN 0 11882000 26550 4783 17590 17596 0.04725456443247822 LHGLEILNS 9 Unmodified _LHGLEILNS_ 0 0 0 ENST00000480233.1_1_11:113235406-113237019:+|nuORF;ENSG00000149292|ENST00000529221|TTC12 ENST00000480233.1_1_11:113235406-113237019:+|nuORF ENST00000480233.1_1_11:113235406-113237019:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 332.522192 994.544745 -0.0029374 -9.7675E-07 -0.10406 -3.4604E-05 -0.107 -3.5581E-05 332.5221265175667 46.682 0.65955 43.809 43.442 44.102 -2.8733 0.029959 -0.00037043 NaN 4.897 51 18 4 NaN NaN NaN NaN 0 NaN NaN 0 11134000 26551 4783 17590 17596 0.04725456443247822 LHGLFAVY 8 Unmodified _LHGLFAVY_ 0 0 0 ENST00000460320.1_1_9:131078140-131084687:-|nuORF;ENSG00000167112|ENST00000372890|TRUB2 ENST00000460320.1_1_9:131078140-131084687:-|nuORF ENST00000460320.1_1_9:131078140-131084687:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2388916015625 2 460.255446 918.496338 NaN NaN NaN NaN NaN NaN NaN 53.338 1 50.251 49.751 50.751 -3.0876 0 0 0 0.21022 1 9818 9818 17.087 3.5787 1 26552 5786 17591 17597 26204 26204 0.0338300759399317 LHGLRQAHF 9 Unmodified _LHGLRQAHF_ 0 0 0 ENST00000534864.5_1_11:94890896-94938024:+|nuORF ENST00000534864.5_1_11:94890896-94938024:+|nuORF ENST00000534864.5_1_11:94890896-94938024:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016296386719 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 108.5 1 104.05 103.55 104.55 -4.4518 0 0 0 0.23508 1 20824 20824 5.7319 1.4026 1 26553 11009 17592 17598 26205 26205 0.047508068684237514 LHGPHMPAVS 10 Unmodified _LHGPHMPAVS_ 0 0 0 ENST00000534161.5_1_11:418373-429524:-|nuORF ENST00000534161.5_1_11:418373-429524:-|nuORF ENST00000534161.5_1_11:418373-429524:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6897583007812 2 523.266019 1044.51748 -0.30457 -0.00015937 0.30672 0.00016049 0.0021425 1.1211E-06 523.7672243612774 72.663 0.78786 69.352 68.884 69.671 -3.3107 25 21 2 0 0 0 0.86261 1 14206 14206 10.824 0.75 1 3980700 26554 11002 17593 17599 26206 26206 -0.0029935036880033294 LHGQRAHLF 9 Unmodified _LHGQRAHLF_ 0 0 0 PLEKHG4|p.R772H|1|0.26|ENSG00000196155|chr16:67285409-67285409|G/A|missense_variant PLEKHG4|p.R772H|1|0.26|ENSG00000196155|chr16:67285409-67285409|G/A|missense_variant PLEKHG4|p.R772H|1|0.26|ENSG00000196155|chr16:67285409-67285409|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017822265625 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 108.27 1 104.13 103.63 104.63 -4.135 0 0 0 0.23508 1 20831 20831 5.7319 1.4026 1 26555 12801 17594 17600 26207 26207 0.04750806868401014 LHHDIMLL 8 Unmodified _LHHDIMLL_ 0 0 0 ENSG00000092009|ENST00000250378|CMA1 ENSG00000092009|ENST00000250378|CMA1 ENSG00000092009|ENST00000250378|CMA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.04217529296875 3 331.184634 990.532072 0.20913 6.9259E-05 -0.42473 -0.00014066 -0.21561 -7.1406E-05 331.18452423207293 103.92 0.86791 99.574 99.001 99.869 -4.346 61 24 4 0 0 0 1.0262 1 19879 19879 4.3292 0 1 4176200 26556 1819 17595 17601 26208 26208 0.03642721779340263 LHHFRPDL 8 Unmodified _LHHFRPDL_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1;EHBP1|p.T756Qfs*17|1|0.44|ENSG00000115504|chr2:62949001-62949001|A/-|frameshift_variant;ENST00000469591.1_1_2:63169876-63182810:+|nuORF ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.23114013671875 3 345.522526 1033.54575 -0.57765 -0.00019959 0.53749 0.00018571 -0.040163 -1.3877E-05 345.52237951044776 39.092 0.59787 36.542 36.192 36.789 -2.5491 21 16 2 0 0 0 1.0265 1 7238 7238 1.6526 0 1 909860 26557 2859 17596 17602 26209 26209 0.03031715602787699 LHHPPGDT 8 Unmodified _LHHPPGDT_ 0 0 0 ENST00000462794.1_1_22:36912452-36912849:-|nuORF ENST00000462794.1_1_22:36912452-36912849:-|nuORF ENST00000462794.1_1_22:36912452-36912849:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2160949707031 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 83.515 1 83.515 83.015 84.015 0 0 0 0 0.21486 1 16285 16285 10.183 0 1 26558 10092 17597 17603 26210 26210 -0.027245144849530334 LHHPPGDT 8 Unmodified _LHHPPGDT_ 0 0 0 ENST00000462794.1_1_22:36912452-36912849:-|nuORF ENST00000462794.1_1_22:36912452-36912849:-|nuORF ENST00000462794.1_1_22:36912452-36912849:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21490478515625 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 112.99 1 108.71 108.21 109.21 -4.2725 0 0 0 0.21486 1 21758 21758 9.3474 0 1 26559 10092 17597 17603 26211 26211 -0.027245144849530334 LHHPPHLE 8 Unmodified _LHHPPHLE_ 0 0 0 REV__IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant REV__IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25750732421875 2 490.259051 978.503549 -0.25333 -0.0001242 0.25244 0.00012376 -0.000887 -4.3486E-07 490.25846027427804 97.198 0.27211 93.278 93.091 93.363 -3.9194 15 7 3 0 0 0 8448 1 18643 18643 0.25148 0 1 1222800 + 26560 23651 17598 17604 26212 26212 0.013437401944202065 LHHRRATGRT 10 Unmodified _LHHRRATGRT_ 0 0 0 ENST00000421182.5_1_2:216288909-216288966:-|nuORF ENST00000421182.5_1_2:216288909-216288966:-|nuORF ENST00000421182.5_1_2:216288909-216288966:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3018188476562 2 602.842136 1203.66972 0.39293 0.00023688 -2.2459 -0.0013539 -1.853 -0.0011171 603.342244294709 142.15 0.24887 142.15 142.02 142.27 0 9 6 2 0 0 0 0.85881 1 28324 28324 13.615 3.5409 1 4069600 26561 9666 17599 17605 26213 26213 0.07603186422988983 LHHRRPQHPPC 11 Unmodified _LHHRRPQHPPC_ 0 0 0 ENST00000559845.5_1_15:58724261-58837965:+|nuORF ENST00000559845.5_1_15:58724261-58837965:+|nuORF ENST00000559845.5_1_15:58724261-58837965:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2406005859375 3 459.907156 1376.69964 NaN NaN NaN NaN NaN NaN NaN 12.699 1 11.579 11.079 12.079 -1.1206 0 0 0 0.22632 1 1535 1535 0 0 1 26562 11278 17600 17606 26214 26214 0.026358020966881668 LHHSHLQQIR 10 Unmodified _LHHSHLQQIR_ 0 0 0 NINL|p.R725L|1|0.32|ENSG00000101004|chr20:25478950-25478950|C/A|missense_variant NINL|p.R725L|1|0.32|ENSG00000101004|chr20:25478950-25478950|C/A|missense_variant NINL|p.R725L|1|0.32|ENSG00000101004|chr20:25478950-25478950|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0470275878906 4 317.929723 1267.68979 -0.42259 -0.00013435 0.32619 0.0001037 -0.096403 -3.0649E-05 317.93012799097545 36.883 1.4725 36.883 36.455 37.927 0 99 41 4 0 0 0 0.91149 1 6944 6944 0.62683 0.21856 1 9214000 26563 12687 17601 17607 26215 26215 0.06664937362938872 LHHTTTLTSL 10 Unmodified _LHHTTTLTSL_ 0 0 0 ENST00000373840.8_1_9:123954490-123964046:-|nuORF ENST00000373840.8_1_9:123954490-123964046:-|nuORF ENST00000373840.8_1_9:123954490-123964046:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.207763671875 3 375.208384 1122.60332 0.31495 0.00011817 -0.70349 -0.00026396 -0.38854 -0.00014578 375.2080689189509 30.869 0.28013 28.843 28.635 28.915 -2.0264 11 7 2 0 0 0 0.71619 1 5288 5288 9.544 0.79857 1 457170 26564 9207 17602 17608 26216 26216 0.04692513017721467 LHIHQQSH 8 Unmodified _LHIHQQSH_ 0 0 0 ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484;nc|ENSG00000127081|Q5JVG2-2|ZNF484 ENSG00000127081|ENST00000375495|ZNF484 ENSG00000127081|ENST00000375495|ZNF484 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.1766662597656 3 333.842147 998.504612 -0.43894 -0.00014654 -0.46559 -0.00015543 -0.90453 -0.00030197 333.84191499135665 34.53 0.58807 32.212 31.876 32.464 -2.3175 39 16 3 0 0 0 0.74818 1 6300 6300 7.2892 0.56607 1 5821500 26565 3461 17603 17609 26217 26217 0.005299545633306479 LHIIVTLTVS 10 Unmodified _LHIIVTLTVS_ 0 0 0 REV__ENST00000599504.5_1_19:40502974-40503061:+|nuORF REV__ENST00000599504.5_1_19:40502974-40503061:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7774047851562 2 548.342249 1094.66995 0.35489 0.0001946 2.2408 0.0012287 2.5957 0.0014234 548.3416602329376 87.671 0.18121 83.676 83.618 83.799 -3.9953 5 4 2 0 0 0 1.1333 1 16707 16707 0.043787 0 1 672250 + 26566 23402 17604 17610 26218 26218 0.12639748579613297 LHIKPGPEA 9 Unmodified _LHIKPGPEA_ 0 0 0 REV__ENST00000451786.5_1_7:130629953-130629986:-|nuORF REV__ENST00000451786.5_1_7:130629953-130629986:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7782287597656 2 481.276909 960.539266 -0.24277 -0.00011684 0.50743 0.00024421 0.26466 0.00012737 481.277128205733 57.277 1.9408 57.277 56.536 58.477 0 96 55 2 0 0 0 0.6329 1 10989 10989 10.824 2.2306 1 1919100 + 26567 21812 17605 17611 26219 26219 0.05741777651417124 LHIKPGPEA 9 Unmodified _LHIKPGPEA_ 0 0 0 REV__ENST00000451786.5_1_7:130629953-130629986:-|nuORF REV__ENST00000451786.5_1_7:130629953-130629986:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7786560058594 2 481.276909 960.539266 0.12047 5.7979E-05 0.047624 2.292E-05 0.16809 8.0899E-05 481.27687248266113 60.892 2.1052 57.523 56.391 58.497 -3.3694 85 59 2 0 0 0 0.6329 1 11351 11351 10.824 2.2306 1 1455300 + 26568 21812 17605 17611 26220 26220 0.05741777651417124 LHIPDDGVSL 10 Unmodified _LHIPDDGVSL_ 0 0 0 ENST00000462002.5_1_1:155679570-155696073:+|nuORF ENST00000462002.5_1_1:155679570-155696073:+|nuORF ENST00000462002.5_1_1:155679570-155696073:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.282470703125 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 99.15 1 95.194 94.694 95.694 -3.9564 0 0 0 0.22588 1 19035 19035 10.824 2.2306 1 26569 10081 17606 17612 26221 26221 0.020531352350417365 LHITNGQF 8 Unmodified _LHITNGQF_ 0 0 0 REV__ENSG00000181333|ENST00000315765|HEPHL1 REV__ENSG00000181333|ENST00000315765|HEPHL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2475891113281 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 176.04 1 171.16 170.66 171.66 -4.8739 0 0 0 0.21486 1 35009 35009 5.2307 0 1 + 26570 18729 17607 17613 26222 26222 0.009566315832444161 LHITNGQF 8 Unmodified _LHITNGQF_ 0 0 0 REV__ENSG00000181333|ENST00000315765|HEPHL1 REV__ENSG00000181333|ENST00000315765|HEPHL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.246337890625 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 174.68 1 169.78 169.28 170.28 -4.8916 0 0 0 0.21486 1 34782 34782 2.5775 0 1 + 26571 18729 17607 17613 26223 26223 0.009566315832444161 LHKEVLQL 8 Unmodified _LHKEVLQL_ 0 0 0 KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant;KCNH3|p.W987Gfs*47|1|0.28|ENSG00000135519|chr12:49557655-49557655|C/-|frameshift_variant;ENSG00000135519|ENST00000257981|KCNH3 KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2638854980469 2 490.300384 978.586216 NaN NaN NaN NaN NaN NaN NaN 175.97 1 175.97 175.47 176.47 0 0 0 0 0.21486 1 36453 36453 0.69038 0 1 26572 3931 17608 17614 26224 26224 0.0960663720258026 LHKLIRPQH 9 Unmodified _LHKLIRPQH_ 0 0 0 REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant REV__PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21661376953125 3 381.236608 1140.688 NaN NaN NaN NaN NaN NaN NaN 67.922 1 64.386 63.886 64.886 -3.5362 0 0 0 0.23508 1 12754 12754 1.0715 0 1 + 26573 19102 17609 17615 26225 26225 0.12327928344984684 LHKLLLRVVL 10 Unmodified _LHKLLLRVVL_ 0 0 0 REV__nc|ENSG00000136699|Q9NXE4-10|SMPD4 REV__nc|ENSG00000136699|Q9NXE4-10|SMPD4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2998046875 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 136.9 1 132.06 131.56 132.56 -4.84 0 0 0 0.22588 1 26369 26369 0.45834 0 1 + 26574 16343 17610 17616 26226 26226 0.22939988766870556 LHKRHIGH 8 Unmodified _LHKRHIGH_ 0 0 0 REV__ENST00000588116.1_1_17:33977635-33977996:+|nuORF REV__ENST00000588116.1_1_17:33977635-33977996:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.9993591308594 3 333.198265 996.572966 -0.78117 -0.00026029 -0.56588 -0.00018855 -1.347 -0.00044883 333.1979628882163 47.075 0.87112 44.125 43.459 44.33 -2.9499 37 24 2 0 0 0 1.0262 1 8570 8570 4.3292 0 1 909880 + 26575 13073 17611 17617 26227 26227 0.07454243933841553 LHLAGLRRF 9 Unmodified _LHLAGLRRF_ 0 0 0 ENSG00000107872|ENST00000369956|FBXL15 ENSG00000107872|ENST00000369956|FBXL15 ENSG00000107872|ENST00000369956|FBXL15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2739868164062 2 541.832717 1081.65088 0.32556 0.0001764 -3.802 -0.0020601 -3.4765 -0.0018837 542.3314489280361 143.09 0.1689 143.09 143.04 143.21 0 5 4 2 0 0 0 0.8204 1 28539 28539 8.5933 0 1 1446400 26576 2445 17612 17618 26228 26228 0.11332256799209972 LHLAIIHG 8 Unmodified _LHLAIIHG_ 0 0 0 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2318420410156 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 14.871 1 13.757 13.257 14.257 -1.1142 0 0 0 0.21486 1 2258 2258 0.79363 0 1 26577 1553 17613 17619 26229 26229 0.08186116205195049 LHLALLLF 8 Unmodified _LHLALLLF_ 0 0 0 REV__GABRG1|p.T29A|1|0.41|ENSG00000163285|chr4:46123829-46123829|T/C|missense_variant REV__GABRG1|p.T29A|1|0.41|ENSG00000163285|chr4:46123829-46123829|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.8619689941406 3 313.872385 938.595324 NaN NaN NaN NaN NaN NaN NaN 9.5818 1 8.7876 8.2876 9.2876 -0.79424 0 0 0 0.21486 1 1120 1120 0 0 1 + 26578 23558 17614 17620 26230 26230 0.12357030558916904 LHLAPPHW 8 Unmodified _LHLAPPHW_ 0 0 0 REV__ENST00000391694.4_1_19:58989172-58992090:+|nuORF REV__ENST00000391694.4_1_19:58989172-58992090:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.16961669921875 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 72.029 1 68.718 68.218 69.218 -3.3107 0 0 0 0.21486 1 14034 14034 1.8442 0 1 + 26579 21199 17615 17621 26231 26231 0.0324923206242147 LHLAPPHW 8 Unmodified _LHLAPPHW_ 0 0 0 REV__ENST00000391694.4_1_19:58989172-58992090:+|nuORF REV__ENST00000391694.4_1_19:58989172-58992090:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1806640625 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 72.266 1 68.638 68.138 69.138 -3.6275 0 0 0 0.21486 1 13645 13645 1.8442 0 1 + 26580 21199 17615 17621 26232 26232 0.0324923206242147 LHLAPPHW 8 Unmodified _LHLAPPHW_ 0 0 0 REV__ENST00000391694.4_1_19:58989172-58992090:+|nuORF REV__ENST00000391694.4_1_19:58989172-58992090:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1805419921875 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 69.237 1 65.846 65.346 66.346 -3.3903 0 0 0 0.21486 1 13089 13089 0.45834 0 1 + 26581 21199 17615 17621 26233 26233 0.0324923206242147 LHLAQILIL 9 Unmodified _LHLAQILIL_ 0 0 0 ENST00000373344.9_1_X:76938343-76938427:-|nuORF ENST00000373344.9_1_X:76938343-76938427:-|nuORF ENST00000373344.9_1_X:76938343-76938427:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 345.23150634765625 3 345.23046 1032.66955 NaN NaN NaN NaN NaN NaN NaN 38.892 1 36.487 35.987 36.987 -2.4049 0 0 0 0.23508 1 6931 6931 0.26902 0 1 26582 9197 17616 17622 26234 26234 0.15452373650441587 LHLDHITKV 9 Unmodified _LHLDHITKV_ 0 0 0 REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 538.1446533203125 2 538.316566 1074.61858 0.29114 0.00015673 -0.62103 -0.00033431 -0.32989 -0.00017758 538.3161716736323 37.674 0.58586 35.337 35.05 35.636 -2.3375 40 16 3 0 0 0 0.8319 1 6718 6718 4.3292 2.2695 1 6894300 + 26583 13085 17617 17623 26235 26235 0.0842542460554796 LHLDHITKV 9 Unmodified _LHLDHITKV_ 0 0 0 REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 538.316566 1074.61858 0.24547 0.00013214 -0.055542 -2.9899E-05 0.18993 0.00010224 538.3164530796378 35.428 0.58966 35.428 35.134 35.723 0 0.070478 0.00026618 NaN 4.3292 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 8804400 + 26584 13085 17617 17623 0.0842542460554796 LHLDHITKV 9 Unmodified _LHLDHITKV_ 0 0 0 REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 538.316566 1074.61858 -0.20357 -0.00010958 -0.058178 -3.1318E-05 -0.26175 -0.0001409 538.3165109128134 37.738 0.62434 35.269 34.985 35.609 -2.4688 -0.089175 0.00026335 NaN 4.3292 50 17 4 NaN NaN NaN NaN 0 NaN NaN 0 9400000 + 26585 13085 17617 17623 0.0842542460554796 LHLDHITKV 9 Unmodified _LHLDHITKV_ 0 0 0 REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 538.316566 1074.61858 0.25517 0.00013736 -0.55142 -0.00029684 -0.29625 -0.00015948 538.3162514071627 37.746 0.51852 35.398 35.132 35.651 -2.3479 0.039726 -0.00026769 NaN 4.3292 41 14 4 NaN NaN NaN NaN 0 NaN NaN 0 9712600 + 26586 13085 17617 17623 0.0842542460554796 LHLDPQPH 8 Unmodified _LHLDPQPH_ 0 0 0 REV__ENST00000597326.5_3_19:6361768-6366330:+|nuORF REV__ENST00000597326.5_3_19:6361768-6366330:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7211608886719 2 478.751059 955.487565 NaN NaN NaN NaN NaN NaN NaN 149.11 1 144.4 143.9 144.9 -4.7095 0 0 0 0.21323 1 29614 29614 14.582 3.4672 1 + 26587 23388 17618 17624 26236 26236 0.008040339575245525 LHLIFKTLFL 10 Unmodified _LHLIFKTLFL_ 0 0 0 REV__ENST00000290231.10_1_20:44690715-44691024:-|nuORF REV__ENST00000290231.10_1_20:44690715-44691024:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.751953125 2 622.891909 1243.76927 0.94918 0.00059123 -0.063687 -3.967E-05 0.88549 0.00055156 622.8923470174022 105.3 0.09761 101.21 101.16 101.26 -4.0913 4 2 2 0 0 0 0.91149 1 20262 20262 3.9444 3.5938 1 1191700 + 26588 20349 17619 17625 26237 26237 0.15713191264353554 LHLIQKEGW 9 Unmodified _LHLIQKEGW_ 0 0 0 ENSG00000110756|ENST00000349215|HPS5 ENSG00000110756|ENST00000349215|HPS5 ENSG00000110756|ENST00000349215|HPS5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2132873535156 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 129.25 1 124.51 124.01 125.01 -4.7408 0 0 0 0.19636 1 24872 24872 2.4985 0 1 26589 2587 17620 17626 26238 26238 0.06217424605551969 LHLLLFVIVL 10 Unmodified _LHLLLFVIVL_ 0 0 0 REV__ENST00000561186.5_2_15:59323409-59323481:+|nuORF REV__ENST00000561186.5_2_15:59323409-59323481:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2752685546875 2 590.396828 1178.7791 0.34424 0.00020324 2.2366 0.0013205 2.5809 0.0015237 590.397590972549 124.6 0.18034 124.6 124.54 124.72 0 6 4 2 0 0 0 0.91149 1 24594 24594 4.3292 0 1 2560900 + 26590 23049 17621 17627 26239 26239 0.19686379269751342 LHLLRPVDL 9 Unmodified _LHLLRPVDL_ 0 0 0 ENST00000392432.6_1_3:194349154-194354092:-|nuORF ENST00000392432.6_1_3:194349154-194354092:-|nuORF ENST00000392432.6_1_3:194349154-194354092:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2442932128906 3 359.225598 1074.65496 -0.54726 -0.00019659 0.82292 0.00029561 0.27566 9.9023E-05 359.2258389555653 58.72 0.55962 58.72 58.409 58.969 0 38 15 3 0 0 0 0.72108 1 11272 11272 5.2969 0 1 3160600 26591 9374 17622 17628 26240 26240 0.12062301502282935 LHLLRPVDL 9 Unmodified _LHLLRPVDL_ 0 0 0 ENST00000392432.6_1_3:194349154-194354092:-|nuORF ENST00000392432.6_1_3:194349154-194354092:-|nuORF ENST00000392432.6_1_3:194349154-194354092:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.225598 1074.65496 -0.23818 -8.5562E-05 0.32863 0.00011805 0.090449 3.2492E-05 359.22565956145843 61.342 0.65053 58.381 58.001 58.651 -2.9614 -0.081379 -0.00012755 NaN 5.2969 48 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3943400 26592 9374 17622 17628 0.12062301502282935 LHLLRPVDL 9 Unmodified _LHLLRPVDL_ 0 0 0 ENST00000392432.6_1_3:194349154-194354092:-|nuORF ENST00000392432.6_1_3:194349154-194354092:-|nuORF ENST00000392432.6_1_3:194349154-194354092:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 359.225598 1074.65496 -0.49305 -0.00017712 0.6357 0.00022836 0.14265 5.1244E-05 359.2258066704675 61.596 0.7266 58.357 57.997 58.724 -3.2395 -0.10553 0.00020337 NaN 5.2969 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3612300 26593 9374 17622 17628 0.12062301502282935 LHLLVVKT 8 Unmodified _LHLLVVKT_ 0 0 0 ENST00000452211.5_2_3:48341958-48342785:-|nuORF;ENST00000456495.5_3_3:48341958-48342842:-|nuORF ENST00000452211.5_2_3:48341958-48342785:-|nuORF ENST00000452211.5_2_3:48341958-48342785:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.2071838378906 3 308.207656 921.601138 NaN NaN NaN NaN NaN NaN NaN 105.54 1 101.28 100.78 101.78 -4.2638 0 0 0 0.21486 1 20773 20773 0.35063 0.043601 1 26594 9990 17623 17629 26241 26241 0.13720129070577514 LHLNSCLY 8 Unmodified _LHLNSCLY_ 0 0 0 nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1 nc|ENSG00000070729|Q14028-2|CNGB1 nc|ENSG00000070729|Q14028-2|CNGB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7830810546875 2 481.741845 961.469137 NaN NaN NaN NaN NaN NaN NaN 74.722 1 74.722 74.222 75.222 0 0 0 0 0.20568 1 14508 14508 20.871 2.7362 1 26595 1436 17624 17630 26242 26242 -0.01313844008700471 LHLQIKWRATI 11 Unmodified _LHLQIKWRATI_ 0 0 0 nc|ENSG00000132780|P49321-3|NASP;ENST00000529333.5_1_1:46049729-46070604:+|nuORF nc|ENSG00000132780|P49321-3|NASP nc|ENSG00000132780|P49321-3|NASP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2314453125 3 460.282106 1377.82449 NaN NaN NaN NaN NaN NaN NaN 107.58 1 103.44 102.94 103.94 -4.135 0 0 0 0.22632 1 20693 20693 0.026206 0 1 26596 12327 17625 17631 26243 26243 0.1506899778485149 LHLSNCRK 8 Unmodified _LHLSNCRK_ 0 0 0 nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1433410644531 3 324.179883 969.517819 NaN NaN NaN NaN NaN NaN NaN 62.894 1 59.637 59.137 60.137 -3.2567 0 0 0 0.21486 1 11796 11796 1.8442 0 1 26597 4886 17626 17632 26244 26244 0.0318406935106168 LHLTHAYR 8 Unmodified _LHLTHAYR_ 0 0 0 ENST00000466541.1_1_4:77480355-77480511:+|nuORF ENST00000466541.1_1_4:77480355-77480511:+|nuORF ENST00000466541.1_1_4:77480355-77480511:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0499572753906 3 337.522526 1009.54575 -1.9621 -0.00066224 0.3421 0.00011547 -1.62 -0.00054677 337.5226944664042 17.663 0.63307 16.149 15.874 16.507 -1.5148 24 17 2 0 0 0 1.0265 1 2606 2606 3.9444 0 1 242070 26598 10134 17627 17633 26245 26245 0.04135715602797063 LHLTKRFYEC 10 Unmodified _LHLTKRFYEC_ 0 0 0 ENST00000527561.5_1_8:144766681-144776697:+|nuORF;ENST00000532486.5_1_8:144774355-144776697:+|nuORF;ENSG00000181135|ENST00000358656|ZNF707 ENST00000527561.5_1_8:144766681-144776697:+|nuORF ENST00000527561.5_1_8:144766681-144776697:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2284851074219 3 437.228902 1308.66488 NaN NaN NaN NaN NaN NaN NaN 179.36 1 174.49 173.99 174.99 -4.868 0 0 0 2.8426 1 35722 35722 0.043787 0 1 26599 6710 17628 17634 26246 26246 0.02289121445346609 LHLWASLAR 9 Unmodified _LHLWASLAR_ 0 0 0 ENST00000274026.9_1_4:122744785-122745025:-|nuORF ENST00000274026.9_1_4:122744785-122745025:-|nuORF ENST00000274026.9_1_4:122744785-122745025:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.278076171875 2 533.811451 1065.60835 -0.071764 -3.8308E-05 -0.95776 -0.00051127 -1.0295 -0.00054957 533.8108395654194 25.405 0.41183 23.552 23.328 23.74 -1.8534 25 11 3 0 0 0 0.5464 1 4188 4188 0.029283 0 1 1539500 26600 8423 17629 17635 26247 26247 0.07816861670971775 LHLYIEMP 8 Unmodified _LHLYIEMP_ 0 0 0 REV__ENST00000222573.4_1_7:20451505-20451688:+|nuORF REV__ENST00000222573.4_1_7:20451505-20451688:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.0921325683594 3 339.180889 1014.52084 NaN NaN NaN NaN NaN NaN NaN 118.38 1 113.97 113.47 114.47 -4.4088 0 0 0 0.21486 1 22780 22780 1.8442 0.88196 1 + 26601 20037 17630 17636 26248 26248 0.014158996852188466 LHMCPLHSK 9 Unmodified _LHMCPLHSK_ 0 0 0 ENST00000300403.10_1_20:30366685-30366766:+|nuORF ENST00000300403.10_1_20:30366685-30366766:+|nuORF ENST00000300403.10_1_20:30366685-30366766:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2706909179688 2 533.270247 1064.52594 -1.1877 -0.00063338 1.0822 0.00057713 -0.10548 -5.6251E-05 533.2708275187782 17.894 0.63624 16.379 16.042 16.678 -1.5148 31 17 2 0 0 0 0.67531 1 2669 2669 7.9102 7.9102 1 8617800 26602 8546 17631 17637 26249 26249 -0.003741197238468885 LHNITKET 8 Unmodified _LHNITKET_ 0 0 0 REV__SYCP2L|p.V177I|1|0.07|ENSG00000153157|chr6:10902739-10902739|G/A|missense_variant REV__SYCP2L|p.V177I|1|0.07|ENSG00000153157|chr6:10902739-10902739|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74176025390625 2 478.263999 954.513445 NaN NaN NaN NaN NaN NaN NaN 86.78 1 86.78 86.28 87.28 0 0 0 0 0.21486 1 16935 16935 10.824 0.64053 1 + 26603 24758 17632 17638 26250 26250 0.03436883409131042 LHNRQLLFKRY 11 Unmodified _LHNRQLLFKRY_ 0 0 0 ENST00000432012.1_1_1:24792390-24792576:+|nuORF ENST00000432012.1_1_1:24792390-24792576:+|nuORF ENST00000432012.1_1_1:24792390-24792576:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 496.1409606933594 3 496.624643 1486.8521 NaN NaN NaN NaN NaN NaN NaN 163.5 1 163.5 163 164 0 0 0 0 0.23698 1 32961 32961 1.4551 1.0006 1 26604 9792 17633 17639 26251 26251 0.12814901045067018 LHNSTKEHK 9 Unmodified _LHNSTKEHK_ 0 0 0 REV__ENSG00000164815|ENST00000297431|ORC5 REV__ENSG00000164815|ENST00000297431|ORC5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 365.2161560058594 3 365.196478 1092.56761 NaN NaN NaN NaN NaN NaN NaN 84.45 1 80.738 80.238 81.238 -3.7117 0 0 0 0.23508 1 16131 16131 2.7352 0 1 + 26605 17710 17634 17640 26252 26252 0.025024755606864346 LHPDGNLCLP 10 Unmodified _LHPDGNLCLP_ 0 0 0 ENST00000483195.5_1_2:74452054-74512997:-|nuORF;nc|ENSG00000188687|Q9BY07-5|SLC4A5 ENST00000483195.5_1_2:74452054-74512997:-|nuORF ENST00000483195.5_1_2:74452054-74512997:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.200439453125 3 360.183181 1077.52771 NaN NaN NaN NaN NaN NaN NaN 38.092 1 35.754 35.254 36.254 -2.3375 0 0 0 0.22588 1 6764 6764 4.1895 1.1172 1 26606 10410 17635 17641 26253 26253 -0.007947874342335126 LHPEINRW 8 Unmodified _LHPEINRW_ 0 0 0 REV__ENSG00000164815|ENST00000297431|ORC5 REV__ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.28564453125 2 532.785433 1063.55631 0.11692 6.2294E-05 -1.0815 -0.00057621 -0.96459 -0.00051392 532.7848707753699 93.281 0.72835 89.437 89.123 89.851 -3.844 31 20 3 0 0 0 0.64227 1 17922 17922 19.439 1.2926 1 1900800 + 26607 17710 17636 17642 26254 26254 0.02707698257222546 LHPFWRYALEK 11 Unmodified _LHPFWRYALEK_ 0 0 0 REV__ENST00000234875.8_1_1:6245528-6245660:-|nuORF REV__ENST00000234875.8_1_1:6245528-6245660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 730.4610595703125 2 730.395879 1458.7772 NaN NaN NaN NaN NaN NaN NaN 42.413 1 39.694 39.194 40.194 -2.7191 0 0 0 0.23698 1 7934 7934 1.4819 0.15237 1 + 26608 20080 17637 17643 26255 26255 0.06616718513851083 LHPGRKLV 8 Unmodified _LHPGRKLV_ 0 0 0 ENST00000428278.6_2_8:37963488-37963584:+|nuORF ENST00000428278.6_2_8:37963488-37963584:+|nuORF ENST00000428278.6_2_8:37963488-37963584:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2325134277344 2 460.295436 918.57632 NaN NaN NaN NaN NaN NaN NaN 176.28 1 176.28 175.78 176.78 0 0 0 0 0.2396 1 36517 36517 0.0082765 0 1 26609 9749 17638 17644 26256 26256 0.11377493987833986 LHPGRKLV 8 Unmodified _LHPGRKLV_ 0 0 0 ENST00000428278.6_2_8:37963488-37963584:+|nuORF ENST00000428278.6_2_8:37963488-37963584:+|nuORF ENST00000428278.6_2_8:37963488-37963584:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2483215332031 2 460.295436 918.57632 NaN NaN NaN NaN NaN NaN NaN 177.38 1 177.38 176.88 177.88 0 0 0 0 0.21486 1 36745 36745 0.79363 0 1 26610 9749 17638 17644 26257 26257 0.11377493987833986 LHPHVPVCR 9 Unmodified _LHPHVPVCR_ 0 0 0 ENST00000245304.4_1_13:98117480-98117684:+|nuORF ENST00000245304.4_1_13:98117480-98117684:+|nuORF ENST00000245304.4_1_13:98117480-98117684:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.2432861328125 3 353.195644 1056.5651 NaN NaN NaN NaN NaN NaN NaN 108.19 1 104.06 103.56 104.56 -4.135 0 0 0 0.23508 1 20817 20817 5.7319 0 1 26611 8204 17639 17645 26258 26258 0.039083486220533814 LHPQLLPY 8 Unmodified _LHPQLLPY_ 0 0 0 REV__ENST00000491554.6_1_15:40716399-40727929:+|nuORF REV__ENST00000491554.6_1_15:40716399-40727929:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26007080078125 2 490.781828 979.549102 0.11461 5.6249E-05 0.13542 6.6461E-05 0.25003 0.00012271 490.78184008031826 135.98 0.52466 131.34 131.04 131.57 -4.6399 31 14 3 0 0 0 0.88214 1 26770 26770 3.5871 2.9057 1 4368900 + 26612 22174 17640 17646 26259 26259 0.05850965656804874 LHPSPSLSRV 10 Unmodified _LHPSPSLSRV_ 0 0 0 ENST00000537971.5_1_12:3395045-3395321:+|nuORF ENST00000537971.5_1_12:3395045-3395321:+|nuORF ENST00000537971.5_1_12:3395045-3395321:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7920532226562 2 546.811648 1091.60874 0.51118 0.00027952 -0.4102 -0.0002243 0.10098 5.5214E-05 546.8114486440941 83.132 1.5771 83.132 82.734 84.311 0 138 44 5 0 0 0 0.74842 1 16324 16324 6.2058 0.44535 1 341230000 26613 11044 17641 17647 26260 26260 0.06660236600191638 LHPSPSLSRV 10 Unmodified _LHPSPSLSRV_ 0 0 0 ENST00000537971.5_1_12:3395045-3395321:+|nuORF ENST00000537971.5_1_12:3395045-3395321:+|nuORF ENST00000537971.5_1_12:3395045-3395321:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.811648 1091.60874 0.13535 7.4011E-05 -0.10885 -5.9522E-05 0.026498 1.4489E-05 546.8116003491955 86.657 1.0933 82.93 82.514 83.608 -3.727 -0.018853 0.0002054 NaN 6.2058 122 30 5 NaN NaN NaN NaN 0 NaN NaN 0 318880000 26614 11044 17641 17647 0.06660236600191638 LHPSPSLSRV 10 Unmodified _LHPSPSLSRV_ 0 0 0 ENST00000537971.5_1_12:3395045-3395321:+|nuORF ENST00000537971.5_1_12:3395045-3395321:+|nuORF ENST00000537971.5_1_12:3395045-3395321:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.811648 1091.60874 0.31172 0.00017045 -0.35054 -0.00019168 -0.038815 -2.1225E-05 546.8114906984296 86.791 1.5836 82.841 82.472 84.055 -3.9503 -0.1077 -5.8913E-05 NaN 6.2058 139 44 5 NaN NaN NaN NaN 0 NaN NaN 0 285570000 26615 11044 17641 17647 0.06660236600191638 LHPSPSLSRV 10 Unmodified _LHPSPSLSRV_ 0 0 0 ENST00000537971.5_1_12:3395045-3395321:+|nuORF ENST00000537971.5_1_12:3395045-3395321:+|nuORF ENST00000537971.5_1_12:3395045-3395321:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.811648 1091.60874 0.17868 9.7702E-05 -0.23002 -0.00012577 -0.051339 -2.8073E-05 546.8115522867477 86.621 1.8293 82.892 82.483 84.313 -3.7289 -0.056688 7.2895E-05 NaN 6.2058 154 51 5 NaN NaN NaN NaN 0 NaN NaN 0 288200000 26616 11044 17641 17647 0.06660236600191638 LHPSSDPPPP 10 Unmodified _LHPSSDPPPP_ 0 0 0 ENST00000368478.2_1_6:119150205-119215360:-|nuORF ENST00000368478.2_1_6:119150205-119215360:-|nuORF ENST00000368478.2_1_6:119150205-119215360:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2789916992188 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 60.053 1 56.83 56.33 57.33 -3.2237 0 0 0 0.22588 1 11228 11228 11.64 0.52583 1 26617 9099 17642 17648 26261 26261 -0.011194204534831442 LHPTPATH 8 Unmodified _LHPTPATH_ 0 0 0 nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000467443.5_1_22:21831964-21846319:-|nuORF nc|ENSG00000183506|A4QPH2-2|PI4KAP2 nc|ENSG00000183506|A4QPH2-2|PI4KAP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2299499511719 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 56.8 1 53.61 53.11 54.11 -3.1895 0 0 0 0.22684 1 10536 10536 2.643 0 1 26618 10149 17643 17649 26262 26262 0.009123624117705731 LHPTVFFSLFW 11 Unmodified _LHPTVFFSLFW_ 0 0 0 ENST00000461631.1_1_10:105212070-105212136:-|nuORF ENST00000461631.1_1_10:105212070-105212136:-|nuORF ENST00000461631.1_1_10:105212070-105212136:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2489929199219 3 465.248291 1392.72304 NaN NaN NaN NaN NaN NaN NaN 173.37 1 173.37 172.87 173.87 0 0 0 0 0.22632 1 35848 35848 0.58532 0 1 26619 10074 17644 17650 26263 26263 0.04239126362267598 LHQCVVVALL 10 Unmodified _LHQCVVVALL_ 0 0 0 REV__ENST00000378827.4_1_20:6748921-6749233:+|nuORF REV__ENST00000378827.4_1_20:6748921-6749233:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7685546875 2 547.823169 1093.63179 NaN NaN NaN NaN NaN NaN NaN 90.052 1 90.052 89.552 90.552 0 0 0 0 0.22588 1 17590 17590 3.9444 0 1 + 26620 21127 17645 17651 26264 26264 0.08871539393317107 LHQLNMVI 8 Unmodified _LHQLNMVI_ 0 0 0 REV__tr|U7SU32|U7SU32_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01290PE=4SV=1 REV__tr|U7SU32|U7SU32_FUSNUAmidohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01290PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1825256347656 3 323.184634 966.532072 NaN NaN NaN NaN NaN NaN NaN 73.504 1 69.91 69.41 70.41 -3.594 0 0 0 0.21486 1 13954 13954 0.45834 0 1 + 26621 25139 17646 17652 26265 26265 0.04746721779360996 LHQYRTDKPHV 11 Unmodified _LHQYRTDKPHV_ 0 0 0 REV__nc|ENSG00000204394|P26640-2|VARS1 REV__nc|ENSG00000204394|P26640-2|VARS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25103759765625 3 465.249354 1392.72623 NaN NaN NaN NaN NaN NaN NaN 65.882 1 62.835 62.335 63.335 -3.047 0 0 0 0.22632 1 12759 12759 0.65807 0 1 + 26622 19531 17647 17653 26266 26266 0.04557769468965489 LHRHIKRQ 8 Unmodified _LHRHIKRQ_ 0 0 0 ENSG00000184828|ENST00000590800|ZBTB7C ENSG00000184828|ENST00000590800|ZBTB7C ENSG00000184828|ENST00000590800|ZBTB7C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.786865234375 2 544.333416 1086.65228 0.21027 0.00011446 1.0233 0.00055701 1.2336 0.00067147 544.3362423130739 161.78 0.098206 156.63 156.59 156.68 -5.1438 4 2 2 0 0 0 0.89712 1 31409 31409 0.0082765 0 1 1050000 26623 6937 17648 17654 26267 26267 0.11241890887981754 LHRIHRIV 8 Unmodified _LHRIHRIV_ 0 0 0 REV__ENST00000521909.1_1_8:62430043-62438626:-|nuORF REV__ENST00000521909.1_1_8:62430043-62438626:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26220703125 2 522.332885 1042.65122 NaN NaN NaN NaN NaN NaN NaN 59.556 1 56.242 55.742 56.742 -3.3139 0 0 0 0.21486 1 11075 11075 5.7604 0 1 + 26624 22657 17649 17655 26268 26268 0.13159676519080676 LHRKRKMAA 9 Unmodified _LHRKRKMAA_ 0 0 0 C4BPA|p.G270Vfs*9|1|0.16|ENSG00000123838|chr1:207126809-207126809|A/-|frameshift_variant;ENSG00000123838|ENST00000367070|C4BPA C4BPA|p.G270Vfs*9|1|0.16|ENSG00000123838|chr1:207126809-207126809|A/-|frameshift_variant C4BPA|p.G270Vfs*9|1|0.16|ENSG00000123838|chr1:207126809-207126809|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 555.889892578125 2 555.837477 1109.6604 NaN NaN NaN NaN NaN NaN NaN 10.367 1 9.2731 8.7731 9.7731 -1.0936 0 0 0 0.23508 1 1174 1174 0 0 1 26625 352 17650 17656 26269 26269 0.10995701813112646 LHRLLLLF 8 Unmodified _LHRLLLLF_ 0 0 0 nc|ENSG00000143552|Q5VU65-2|NUP210L;NUP210L|p.F1858Lfs*11|1|0.38|ENSG00000143552|chr1:153992928-153992928|A/-|frameshift_variant;ENSG00000143552|ENST00000368559|NUP210L;NUP210L|p.F928Sfs*10|1|0.1|ENSG00000143552|chr1:154060607-154060608|-/CTTGTTACAG|frameshift_variant;NUP210L|p.F959Lfs*32|1|0.36|ENSG00000143552|chr1:154058667-154058667|A/-|frameshift_variant;NUP210L|p.I131Kfs*11|1|0.04|ENSG00000143552|chr1:154143523-154143526|TCAA/-|frameshift_variant;NUP210L|p.E210Rfs*7|1|0.16|ENSG00000143552|chr1:154139892-154139892|T/-|frameshift_variant;NUP210L|p.N522Ifs*23|1|0.13|ENSG00000143552|chr1:154117782-154117782|C/-|frameshift_variant nc|ENSG00000143552|Q5VU65-2|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.272216796875 3 342.22705 1023.65932 NaN NaN NaN NaN NaN NaN NaN 5.8695 1 4.8296 4.3296 5.3296 -1.04 0 0 0 0.21486 1 343 343 0 0 1 26626 4503 17651 17657 26270 26270 0.14843810715865402 LHRLLLVP 8 Unmodified _LHRLLLVP_ 0 0 0 ENST00000338154.10_1_X:53965368-53965482:-|nuORF ENST00000338154.10_1_X:53965368-53965482:-|nuORF ENST00000338154.10_1_X:53965368-53965482:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2431640625 2 480.821287 959.628021 NaN NaN NaN NaN NaN NaN NaN 123.71 1 119.11 118.61 119.61 -4.5926 0 0 0 0.2396 1 23811 23811 0.12286 0 1 26627 8827 17652 17658 26271 26271 0.14659237681769355 LHRNIESVMNP 11 Unmodified _LHRNIESVMNP_ 0 0 0 ENST00000358234.4_1_19:49843491-49843542:-|nuORF ENST00000358234.4_1_19:49843491-49843542:-|nuORF ENST00000358234.4_1_19:49843491-49843542:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2277526855469 3 437.227561 1308.66085 0.1724 7.5377E-05 0.043693 1.9104E-05 0.21609 9.4481E-05 437.2275428787456 32.896 0.55784 32.896 32.571 33.129 0 36 15 3 0 0 0 0.78057 1 5987 5987 6.2344 1.1868 1 2262500 26628 8988 17653 17659 26272 26272 0.018870319516281597 LHRNIESVMNP 11 Unmodified _LHRNIESVMNP_ 0 0 0 ENST00000358234.4_1_19:49843491-49843542:-|nuORF ENST00000358234.4_1_19:49843491-49843542:-|nuORF ENST00000358234.4_1_19:49843491-49843542:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2195129394531 3 437.227561 1308.66085 -0.43086 -0.00018838 0.46615 0.00020381 0.03529 1.543E-05 437.22783454224947 35.41 0.5332 33.017 32.705 33.238 -2.3938 20 14 2 0 0 0 0.95898 1 6523 6523 4.4062 0 1 1245800 26629 8988 17653 17659 26273 26273 0.018870319516281597 LHRRWSNFNAA 11 Unmodified _LHRRWSNFNAA_ 0 0 0 REV__ENSG00000215474|ENST00000425639|SKOR2 REV__ENSG00000215474|ENST00000425639|SKOR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.239501953125 3 457.90581 1370.6956 0.15735 7.205E-05 -1.7434 -0.00079832 -1.5861 -0.00072627 458.2392499548363 14.825 0.17826 14.825 14.735 14.914 0 7 4 2 0 0 0 0.80429 1 2231 2231 3.0723 1.1659 1 281340 26630 19691 17654 17660 26274 26274 0.02508035874620873 LHRSRAPL 8 Unmodified _LHRSRAPL_ 0 0 0 REV__ENST00000558362.5_1_15:45670204-45670582:-|nuORF REV__ENST00000558362.5_1_15:45670204-45670582:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1964111328125 3 317.194521 948.561733 NaN NaN NaN NaN NaN NaN NaN 87.51 1 83.76 83.26 84.26 -3.7501 0 0 0 0.21486 1 16744 16744 0.45834 0 1 + 26631 23023 17655 17661 26275 26275 0.08539421839714123 LHRVQRKK 8 Unmodified _LHRVQRKK_ 0 0 0 ENSG00000177453|ENST00000326035|NIM1K ENSG00000177453|ENST00000326035|NIM1K ENSG00000177453|ENST00000326035|NIM1K MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2803344726562 2 532.843616 1063.67268 NaN NaN NaN NaN NaN NaN NaN 173.53 1 168.63 168.13 169.13 -4.8977 0 0 0 0.2396 1 34461 34461 0.0082765 0 1 26632 6512 17656 17662 26276 26276 0.14339061547798337 LHRVSKDID 9 Unmodified _LHRVSKDID_ 0 0 0 REV__ENST00000519683.1_1_5:153826347-153830818:+|nuORF REV__ENST00000519683.1_1_5:153826347-153830818:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.20367431640625 3 361.536612 1081.58801 -0.8592 -0.00031063 0.74873 0.00027069 -0.11047 -3.994E-05 361.53681686575607 15.263 0.1768 14.149 14.061 14.237 -1.1142 7 4 2 0 0 0 0.64461 1 2356 2356 0.073264 0 1 407770 + 26633 17691 17657 17663 26277 26277 0.050476462205324424 LHRVSKDID 9 Unmodified _LHRVSKDID_ 0 0 0 REV__ENST00000519683.1_1_5:153826347-153830818:+|nuORF REV__ENST00000519683.1_1_5:153826347-153830818:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 361.536612 1081.58801 -0.57849 -0.00020915 0.089543 3.2373E-05 -0.48895 -0.00017677 361.5367947945977 15.306 0.16808 14.085 13.998 14.166 -1.2219 -0.032242 -0.00040263 NaN 0.073264 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 293430 + 26634 17691 17657 17663 0.050476462205324424 LHRWHWRARRR 11 Unmodified _LHRWHWRARRR_ 0 0 0 REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.365234375 2 815.46415 1628.91375 NaN NaN NaN NaN NaN NaN NaN 170.56 1 170.56 170.06 171.06 0 0 0 0 0.22632 1 35077 35077 0.026206 0.025642 1 + 26635 23469 17658 17664 26278 26278 0.12444690307552264 LHRWHWRARRR 11 Unmodified _LHRWHWRARRR_ 0 0 0 REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.349853515625 2 815.46415 1628.91375 NaN NaN NaN NaN NaN NaN NaN 172.66 1 172.66 172.16 173.16 0 0 0 0 0.23698 1 35655 35655 0.30703 0 1 + 26636 23469 17658 17664 26279 26279 0.12444690307552264 LHRWHWRARRR 11 Unmodified _LHRWHWRARRR_ 0 0 0 REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3652954101562 2 815.46415 1628.91375 NaN NaN NaN NaN NaN NaN NaN 172.73 1 172.73 172.23 173.23 0 0 0 0 0.22632 1 35675 35675 0.00056442 0 1 + 26637 23469 17658 17664 26280 26280 0.12444690307552264 LHRWRRLRVKR 11 Unmodified _LHRWRRLRVKR_ 0 0 0 REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 788.2300415039062 2 788.500201 1574.98585 NaN NaN NaN NaN NaN NaN NaN 175.32 1 170.44 169.94 170.94 -4.8845 0 0 0 0.22632 1 34867 34867 0 0 1 + 26638 20719 17659 17665 26281 26281 0.22135604661275465 LHSAMEDEY 9 Unmodified _LHSAMEDEY_ 0 0 0 REV__ENSG00000011243|ENST00000397410|AKAP8L REV__ENSG00000011243|ENST00000397410|AKAP8L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7889404296875 2 547.726589 1093.43863 0.069038 3.7814E-05 1.3994 0.00076649 1.4684 0.0008043 547.7270338831429 95.442 0.62567 91.561 91.262 91.888 -3.881 24 17 3 0 0 0 0.60805 1 18360 18360 12.532 3.9383 1 2510400 + 26639 13932 17660 17666 26282 26282 -0.10435667184401609 LHSFYLVVTAL 11 Unmodified _LHSFYLVVTAL_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.33544921875 3 421.576296 1261.70706 -0.14046 -5.9215E-05 0.51529 0.00021723 0.37483 0.00015802 421.57646462531363 65.044 0.44527 61.997 61.728 62.173 -3.047 20 12 2 0 0 0 0.96216 1 12561 12561 0.45452 0.45452 1 1643000 + 26640 19273 17661 17667 26283 26283 0.08667420125379977 LHSFYLVVTAL 11 Unmodified _LHSFYLVVTAL_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 421.576296 1261.70706 -0.22995 -9.6942E-05 0.37131 0.00015654 0.14136 5.9594E-05 421.57641718715666 61.878 0.44241 61.878 61.597 62.039 0 -0.099964 0.00022052 NaN 0.45452 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1671600 + 26641 19273 17661 17667 0.08667420125379977 LHSFYLVVTAL 11 Unmodified _LHSFYLVVTAL_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 421.576296 1261.70706 0.20654 8.7073E-05 -0.088588 -3.7346E-05 0.11795 4.9727E-05 421.5762393261728 65.569 0.49126 62.111 61.787 62.278 -3.4581 0.13321 -0.00036112 NaN 0.45452 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1710500 + 26642 19273 17661 17667 0.08667420125379977 LHSFYLVVTAL 11 Unmodified _LHSFYLVVTAL_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 421.576296 1261.70706 -0.0035778 -1.5083E-06 0.00099358 4.1887E-07 -0.0025842 -1.0894E-06 421.5763580932572 65.209 0.50717 61.925 61.623 62.13 -3.2832 -0.052257 -0.00024783 NaN 0.45452 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1762800 + 26643 19273 17661 17667 0.08667420125379977 LHSLALLGV 9 Unmodified _LHSLALLGV_ 0 0 0 ENST00000575427.1_1_17:7306387-7306724:-|nuORF;ENSG00000205544|ENST00000302422|TMEM256 ENST00000575427.1_1_17:7306387-7306724:-|nuORF ENST00000575427.1_1_17:7306387-7306724:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.523193359375 2 461.789653 921.564752 0.062183 2.8716E-05 0.11242 5.1914E-05 0.1746 8.063E-05 461.78953191402036 154.94 0.24484 150.16 149.98 150.23 -4.7791 8 6 2 0 0 0 0.60698 1 30803 30803 30.225 5.5509 1 463920 26644 7649 17662 17668 26284 26284 0.10083252173876645 LHSLHLGP 8 Unmodified _LHSLHLGP_ 0 0 0 REV__ENST00000309890.11_1_17:3846802-3850979:-|nuORF REV__ENST00000309890.11_1_17:3846802-3850979:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2353515625 2 437.250695 872.486836 NaN NaN NaN NaN NaN NaN NaN 66.168 1 62.671 62.171 63.171 -3.4965 0 0 0 0.21486 1 12396 12396 10.183 0 1 + 26645 20473 17663 17669 26285 26285 0.04549239308471442 LHSPDRGPSL 10 Unmodified _LHSPDRGPSL_ 0 0 0 REV__ENST00000574376.1_1_17:78075862-78076012:+|nuORF REV__ENST00000574376.1_1_17:78075862-78076012:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20758056640625 3 360.192845 1077.55671 0.032249 1.1616E-05 -0.59081 -0.0002128 -0.55856 -0.00020119 360.1925686167786 49.569 0.52372 46.57 46.344 46.868 -2.999 17 14 3 0 0 0 0.75679 1 9103 9103 3.5871 0.85186 1 847270 + 26646 23194 17664 17670 26286 26286 0.02103073186435722 LHSRFFFFY 9 Unmodified _LHSRFFFFY_ 0 0 0 REV__ENST00000341423.9_1_13:31031046-31031178:-|nuORF REV__ENST00000341423.9_1_13:31031046-31031178:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.3360900878906 3 421.881831 1262.62366 0.066129 2.7899E-05 -0.63833 -0.0002693 -0.5722 -0.0002414 422.2161903269544 73.134 0.58397 69.595 69.339 69.923 -3.5385 28 16 2 0 0 0 0.88211 1 13896 13896 1.1933 0 1 1022700 + 26647 20714 17665 17671 26287 26287 0.0028572846820225095 LHSTASTKL 9 Unmodified _LHSTASTKL_ 0 0 0 REV__ENST00000260746.5_1_10:104459203-104465134:-|nuORF REV__ENST00000260746.5_1_10:104459203-104465134:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7376403808594 2 479.271824 956.529095 -0.02491 -1.1938E-05 0.21694 0.00010397 0.19203 9.2034E-05 479.27185430189667 59.465 0.45481 56.547 56.345 56.8 -2.9185 16 12 2 0 0 0 0.74655 1 11428 11428 15.847 0 1 816900 + 26648 20162 17666 17672 26288 26288 0.04909169926202139 LHSTIMAPK 9 Unmodified _LHSTIMAPK_ 0 0 0 REV__ENSG00000152464|ENST00000378197|RPP38 REV__ENSG00000152464|ENST00000378197|RPP38 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.9990539550781 3 333.188155 996.542637 0.074058 2.4675E-05 -0.40263 -0.00013415 -0.32858 -0.00010948 333.1879686954933 56.884 0.55612 53.695 53.478 54.034 -3.1895 24 15 2 0 0 0 0.8825 1 10545 10545 2.7352 0 1 1304700 + 26649 17111 17667 17673 26289 26289 0.044227044337844745 LHTDGNNIY 9 Unmodified _LHTDGNNIY_ 0 0 0 ZNF800|p.K544Sfs*9|1|0.12|ENSG00000048405|chr7:127373705-127373705|T/-|frameshift_variant;ZNF800|p.A642Vfs*8|1|0.04|ENSG00000048405|chr7:127373411-127373412|-/A|frameshift_variant;ENSG00000048405|ENST00000265827|ZNF800 ZNF800|p.K544Sfs*9|1|0.12|ENSG00000048405|chr7:127373705-127373705|T/-|frameshift_variant ZNF800|p.K544Sfs*9|1|0.12|ENSG00000048405|chr7:127373705-127373705|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 524.2760009765625 2 523.748713 1045.48287 -0.048453 -2.5377E-05 1.124 0.0005887 1.0756 0.00056332 523.749386220675 46.255 0.68839 43.389 43.065 43.753 -2.8666 31 18 2 0 0 0 0.60805 1 8372 8372 12.532 3.9383 1 3725600 26650 1227 17668 17674 26290 26290 -0.03804894975883144 LHTETLRT 8 Unmodified _LHTETLRT_ 0 0 0 REV__ENST00000465029.5_1_2:111419157-111435602:-|nuORF REV__ENST00000465029.5_1_2:111419157-111435602:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1805114746094 3 324.182058 969.524344 NaN NaN NaN NaN NaN NaN NaN 63.149 1 59.892 59.392 60.392 -3.2567 0 0 0 0.21486 1 11850 11850 3.5965 1.3137 1 + 26651 13222 17669 17675 26291 26291 0.03836285783427229 LHTLDLSY 8 Unmodified _LHTLDLSY_ 0 0 0 ENSG00000125872|ENST00000378858|LRRN4 ENSG00000125872|ENST00000378858|LRRN4 ENSG00000125872|ENST00000378858|LRRN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.782470703125 2 481.2531 960.491647 0.15328 7.3766E-05 -0.81561 -0.00039252 -0.66233 -0.00031875 481.25313689118605 96.71 0.9654 92.475 91.951 92.916 -4.2348 45 27 2 0 0 0 0.16788 1 18447 18447 49.669 2.748 1 3681000 26652 3399 17670 17676 26292 26292 0.009820786605587273 LHTLVTRSA 9 Unmodified _LHTLVTRSA_ 0 0 0 ENST00000519374.5_1_5:172410771-172410837:+|nuORF ENST00000519374.5_1_5:172410771-172410837:+|nuORF ENST00000519374.5_1_5:172410771-172410837:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.99969482421875 3 333.197819 996.571629 NaN NaN NaN NaN NaN NaN NaN 44.462 1 44.462 43.962 44.962 0 0 0 0 0.23508 1 8344 8344 2.4985 0 1 26653 10819 17671 17677 26293 26293 0.07320565054419603 LHTRTAKS 8 Unmodified _LHTRTAKS_ 0 0 0 HSD3B2|p.N148Tfs*26|1|0.37|ENSG00000203859|chr1:119421941-119421941|A/-|frameshift_variant HSD3B2|p.N148Tfs*26|1|0.37|ENSG00000203859|chr1:119421941-119421941|A/-|frameshift_variant HSD3B2|p.N148Tfs*26|1|0.37|ENSG00000203859|chr1:119421941-119421941|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.1863708496094 3 305.178648 912.514114 NaN NaN NaN NaN NaN NaN NaN 69.005 1 69.005 68.505 69.505 0 0 0 0 0.21486 1 13350 13350 1.4819 0.51963 1 26654 11919 17672 17678 26294 26294 0.054357228488470355 LHTSPTPGQAP 11 Unmodified _LHTSPTPGQAP_ 0 0 0 REV__ENST00000527620.5_1_11:559022-559837:+|nuORF REV__ENST00000527620.5_1_11:559022-559837:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 369.19287109375 3 369.192734 1104.55637 NaN NaN NaN NaN NaN NaN NaN 26.484 1 24.702 24.202 25.202 -1.7821 0 0 0 0.22632 1 4677 4677 1.4551 1.3911 1 + 26655 22712 17673 17679 26295 26295 0.008276534665810686 LHTVEESA 8 Unmodified _LHTVEESA_ 0 0 0 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant;ADGRL3|p.W832Lfs*13|1|0.39|ENSG00000150471|chr4:61948167-61948168|-/T|frameshift_variant;ADGRL3|p.Y966Lfs*9|1|0.19|ENSG00000150471|chr4:61983464-61983465|-/T|frameshift_variant;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;ADGRL3|p.H1275Lfs*11|1|0.08|ENSG00000150471|chr4:62070322-62070322|A/-|frameshift_variant;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-3|ADGRL3 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 444.2600402832031 2 443.219257 884.423961 0.30571 0.0001355 -0.21034 -9.3228E-05 0.095363 4.2267E-05 443.21907888259403 69.082 0.83118 65.546 65.111 65.942 -3.5362 49 22 3 0 0 0 0.73936 1 12956 12956 8.5933 2.8329 1 4010300 26656 82 17674 17680 26296 26296 -0.02287371270233507 LHVDPRKSN 9 Unmodified _LHVDPRKSN_ 0 0 0 nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO nc|ENSG00000120802|P42167-2|TMPO nc|ENSG00000120802|P42167-2|TMPO MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.270263671875 2 533.293622 1064.57269 0.023849 1.2718E-05 -0.083008 -4.4267E-05 -0.059159 -3.1549E-05 533.293607465693 16.798 0.23974 16.798 16.647 16.887 0 10 6 2 0 0 0 0.70212 1 2624 2624 27.629 16.514 1 881920 26657 3155 17675 17681 26297 26297 0.04298779423334054 LHVDPRKSN 9 Unmodified _LHVDPRKSN_ 0 0 0 nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO nc|ENSG00000120802|P42167-2|TMPO nc|ENSG00000120802|P42167-2|TMPO MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2711791992188 2 533.293622 1064.57269 -0.057358 -3.0589E-05 0.01518 8.0951E-06 -0.042178 -2.2493E-05 533.2937109147133 17.988 0.32018 16.677 16.475 16.795 -1.3109 13 8 2 0 0 0 0.73268 1 2925 2925 18.146 7.0319 1 558700 26658 3155 17675 17681 26298 26298 0.04298779423334054 LHVEDTKD 8 Unmodified _LHVEDTKD_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73748779296875 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 173.19 1 168.4 167.9 168.9 -4.7898 0 0 0 0.23366 1 35315 35315 0.063987 0 1 + 26659 15903 17676 17682 26299 26299 -0.018436997244634767 LHVEDTKD 8 Unmodified _LHVEDTKD_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73748779296875 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 173.2 1 168.41 167.91 168.91 -4.7898 0 0 0 0.21486 1 35318 35318 10.183 0 1 + 26660 15903 17676 17682 26300 26300 -0.018436997244634767 LHVEGSLR 8 Unmodified _LHVEGSLR_ 0 0 0 REV__CDHR4|p.A489V|1|0.33|ENSG00000187492|chr3:49793820-49793820|G/A|missense_variant REV__CDHR4|p.A489V|1|0.33|ENSG00000187492|chr3:49793820-49793820|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.1753234863281 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 35.41 1 33.134 32.634 33.634 -2.2766 0 0 0 0.21486 1 6225 6225 0.45834 0 1 + 26661 13349 17677 17683 26301 26301 0.04484320474580272 LHVILTAKLS 10 Unmodified _LHVILTAKLS_ 0 0 0 REV__nc|ENSG00000196150|P15622-2|ZNF250 REV__nc|ENSG00000196150|P15622-2|ZNF250 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78564453125 2 547.850242 1093.68593 NaN NaN NaN NaN NaN NaN NaN 104.6 1 100.39 99.886 100.89 -4.2183 0 0 0 2.8426 1 20578 20578 1.9064 1.4568 1 + 26662 19221 17678 17684 26302 26302 0.14283454816518315 LHVKDKTD 8 Unmodified _LHVKDKTD_ 0 0 0 REV__ENST00000549441.6_1_12:49741742-49742552:+|nuORF REV__ENST00000549441.6_1_12:49741742-49742552:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73284912109375 2 478.263999 954.513445 NaN NaN NaN NaN NaN NaN NaN 66.333 1 63.006 62.506 63.506 -3.3268 0 0 0 0.23025 1 12486 12486 0.12286 0 1 + 26663 22919 17679 17685 26303 26303 0.03436883409131042 LHVLKSPDDK 10 Unmodified _LHVLKSPDDK_ 0 0 0 REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3192749023438 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 118.39 1 113.88 113.38 114.38 -4.502 0 0 0 2.8426 1 23343 23343 0.063865 0 1 + 26664 22078 17680 17686 26304 26304 0.06533086051786086 LHVPTLRCR 9 Unmodified _LHVPTLRCR_ 0 0 0 XCR1|p.R139H|1|0.24|ENSG00000173578|chr3:46021532-46021532|C/T|missense_variant XCR1|p.R139H|1|0.24|ENSG00000173578|chr3:46021532-46021532|C/T|missense_variant XCR1|p.R139H|1|0.24|ENSG00000173578|chr3:46021532-46021532|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7906494140625 2 547.81621 1093.61787 NaN NaN NaN NaN NaN NaN NaN 56.301 1 53.112 52.612 53.612 -3.1895 0 0 0 0.22251 1 10432 10432 16.942 3.8998 1 26665 26583 17681 17687 26305 26305 0.07480306684851712 LHVQQQEQRQ 10 Unmodified _LHVQQQEQRQ_ 0 0 0 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant;ARHGEF40|p.P1111Lfs*5|2|0.26|ENSG00000165801|chr14:21082320-21082320|C/-|frameshift_variant;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ARHGEF40|p.H1487Tfs*15|3|0.37|ENSG00000165801|chr14:21088033-21088033|C/-|frameshift_variant;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555232.5_1_14:21538555-21549271:+|nuORF;nc|ENSG00000165801|Q8TER5-2|ARHGEF40 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.8926086425781 3 431.893459 1292.65855 NaN NaN NaN NaN NaN NaN NaN 135.25 1 135.25 134.75 135.75 0 0 0 0 0.22588 1 26788 26788 1.9064 0 1 26666 214 17682 17688 26306 26306 0.023923195381939877 LHVQQQEQRQ 10 Unmodified _LHVQQQEQRQ_ 0 0 0 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant;ARHGEF40|p.P1111Lfs*5|2|0.26|ENSG00000165801|chr14:21082320-21082320|C/-|frameshift_variant;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ARHGEF40|p.H1487Tfs*15|3|0.37|ENSG00000165801|chr14:21088033-21088033|C/-|frameshift_variant;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555232.5_1_14:21538555-21549271:+|nuORF;nc|ENSG00000165801|Q8TER5-2|ARHGEF40 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.870361328125 3 431.893459 1292.65855 NaN NaN NaN NaN NaN NaN NaN 24.283 1 22.748 22.248 23.248 -1.5342 0 0 0 0.22588 1 3948 3948 2.086 0.17963 1 26667 214 17682 17688 26307 26307 0.023923195381939877 LHVQQQEQRQ 10 Unmodified _LHVQQQEQRQ_ 0 0 0 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant;ARHGEF40|p.P1111Lfs*5|2|0.26|ENSG00000165801|chr14:21082320-21082320|C/-|frameshift_variant;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ARHGEF40|p.H1487Tfs*15|3|0.37|ENSG00000165801|chr14:21088033-21088033|C/-|frameshift_variant;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555232.5_1_14:21538555-21549271:+|nuORF;nc|ENSG00000165801|Q8TER5-2|ARHGEF40 ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.8917541503906 3 431.893459 1292.65855 NaN NaN NaN NaN NaN NaN NaN 40.675 1 38.136 37.636 38.636 -2.5398 0 0 0 0.22588 1 7294 7294 0.77653 0.078866 1 26668 214 17682 17688 26308 26308 0.023923195381939877 LHVRNLSRE 9 Unmodified _LHVRNLSRE_ 0 0 0 REV__ENSG00000106028|ENST00000265304|SSBP1 REV__ENSG00000106028|ENST00000265304|SSBP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2162780761719 3 375.215873 1122.62579 NaN NaN NaN NaN NaN NaN NaN 129.59 1 124.77 124.27 125.27 -4.817 0 0 0 0.19636 1 24878 24878 2.4985 0 1 + 26669 15030 17683 17689 26309 26309 0.06938157206013784 LHVVKKGKA 9 Unmodified _LHVVKKGKA_ 0 0 0 ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2540283203125 2 490.324194 978.633835 NaN NaN NaN NaN NaN NaN NaN 88.419 1 84.627 84.127 85.127 -3.7926 0 0 0 0.23508 1 17298 17298 4.756 0.81161 1 26670 3617 17684 17690 26310 26310 0.14366336193427287 LHVVKQEV 8 Unmodified _LHVVKQEV_ 0 0 0 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.22772216796875 3 317.858915 950.554916 -0.78513 -0.00024956 0.54479 0.00017317 -0.24034 -7.6393E-05 317.85904192391376 46.412 0.76177 43.545 43.198 43.96 -2.8666 67 21 4 0 0 0 1.0265 1 8382 8382 1.6526 0 1 25031000 26671 3919 17685 17691 26311 26311 0.07766064168481535 LHWIFQIS 8 Unmodified _LHWIFQIS_ 0 0 0 nc|ENSG00000286105|A0A494BZU4|TMEM217B;ENST00000356757.6_1_6:37180235-37180745:-|nuORF nc|ENSG00000286105|A0A494BZU4|TMEM217B nc|ENSG00000286105|A0A494BZU4|TMEM217B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2733154296875 2 522.287277 1042.56 NaN NaN NaN NaN NaN NaN NaN 53.528 1 50.441 49.941 50.941 -3.0876 0 0 0 0.21486 1 9855 9855 10.183 1.5901 1 26672 8970 17686 17692 26312 26312 0.04042368031082333 LHWLDLSS 8 Unmodified _LHWLDLSS_ 0 0 0 REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1 REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1714172363281 3 324.17127 969.491981 NaN NaN NaN NaN NaN NaN NaN 68.074 1 64.965 64.465 65.465 -3.1086 0 0 0 0.21486 1 13214 13214 1.6526 0 1 + 26673 17680 17687 17693 26313 26313 0.006014983804220719 LHWLDLSS 8 Unmodified _LHWLDLSS_ 0 0 0 REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1 REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1694030761719 3 324.17127 969.491981 NaN NaN NaN NaN NaN NaN NaN 71.676 1 68.427 67.927 68.927 -3.2492 0 0 0 0.21486 1 13961 13961 3.9444 0 1 + 26674 17680 17687 17693 26314 26314 0.006014983804220719 LHWLDLSS 8 Unmodified _LHWLDLSS_ 0 0 0 REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1 REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.17193603515625 3 324.17127 969.491981 NaN NaN NaN NaN NaN NaN NaN 68.138 1 64.602 64.102 65.102 -3.5362 0 0 0 0.21486 1 12797 12797 1.6526 0 1 + 26675 17680 17687 17693 26315 26315 0.006014983804220719 LHWLDLSS 8 Unmodified _LHWLDLSS_ 0 0 0 REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1 REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1701965332031 3 324.17127 969.491981 NaN NaN NaN NaN NaN NaN NaN 72.117 1 68.489 67.989 68.989 -3.6275 0 0 0 0.21486 1 13613 13613 3.9444 0 1 + 26676 17680 17687 17693 26316 26316 0.006014983804220719 LHWLLVKA 8 Unmodified _LHWLLVKA_ 0 0 0 ENST00000326291.10_1_13:73356396-73356477:+|nuORF ENST00000326291.10_1_13:73356396-73356477:+|nuORF ENST00000326291.10_1_13:73356396-73356477:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25311279296875 2 490.308013 978.601472 NaN NaN NaN NaN NaN NaN NaN 137.6 1 132.76 132.26 133.26 -4.84 0 0 0 0.21486 1 26513 26513 15.768 0 1 26677 8744 17688 17694 26317 26317 0.11131548790410761 LHWPPIQFV 9 Unmodified _LHWPPIQFV_ 0 0 0 REV__nc|ENSG00000216671|P0C7X3|CCNYL3 REV__nc|ENSG00000216671|P0C7X3|CCNYL3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 568.6627807617188 2 568.816202 1135.61785 -0.2141 -0.00012178 1.7238 0.00098053 1.5097 0.00085875 569.3181006280022 103.24 0.61225 99.056 98.698 99.31 -4.1861 46 17 3 0 0 0 0.56979 1 20229 20229 0.40827 0.28045 1 4972400 + 26678 24273 17689 17695 26318 26318 0.05546629956484139 LHWPPIQFV 9 Unmodified _LHWPPIQFV_ 0 0 0 REV__nc|ENSG00000216671|P0C7X3|CCNYL3 REV__nc|ENSG00000216671|P0C7X3|CCNYL3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 568.816202 1135.61785 0.22868 0.00013008 1.5459 0.00087931 1.7745 0.0010094 569.3176340596997 103.4 0.7052 99.059 98.681 99.386 -4.346 0.0014101 -0.00010263 NaN 0.40827 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3731700 + 26679 24273 17689 17695 0.05546629956484139 LHWQELTTEVW 11 Unmodified _LHWQELTTEVW_ 0 0 0 ENST00000519752.1_1_5:156997722-157002671:-|nuORF ENST00000519752.1_1_5:156997722-157002671:-|nuORF ENST00000519752.1_1_5:156997722-157002671:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24383544921875 3 481.241865 1440.70376 NaN NaN NaN NaN NaN NaN NaN 24.591 1 22.942 22.442 23.442 -1.6482 0 0 0 0.22632 1 4290 4290 1.4551 1.4546 1 26680 10824 17690 17696 26319 26319 0.0010412528067718085 LHWTMWLG 8 Unmodified _LHWTMWLG_ 0 0 0 ENSG00000198785|ENST00000361820|GRIN3A ENSG00000198785|ENST00000361820|GRIN3A ENSG00000198785|ENST00000361820|GRIN3A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2601928710938 2 522.260205 1042.50586 NaN NaN NaN NaN NaN NaN NaN 108.82 1 104.37 103.87 104.87 -4.4518 0 0 0 0.21486 1 20884 20884 10.183 0.10947 1 26681 7492 17691 17697 26320 26320 -0.013695473921416124 LHWWRFLVIWI 11 Unmodified _LHWWRFLVIWI_ 0 0 0 ENST00000526903.1_1_11:71671811-71693962:+|nuORF;ENST00000528683.5_1_11:71640101-71701796:+|nuORF;nc|ENSG00000137522|Q9H920-2|RNF121;ENST00000526549.5_1_11:71673326-71707358:+|nuORF;ENSG00000137522|ENST00000361756|RNF121 ENST00000526903.1_1_11:71671811-71693962:+|nuORF ENST00000526903.1_1_11:71671811-71693962:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3939819335938 2 784.948082 1567.88161 NaN NaN NaN NaN NaN NaN NaN 133.48 1 133.48 132.98 133.98 0 0 0 0 0.23698 1 26409 26409 1.1933 0.9575 1 26682 4091 17692 17698 26321 26321 0.12038465061209536 LHWWRFLVIWI 11 Unmodified _LHWWRFLVIWI_ 0 0 0 ENST00000526903.1_1_11:71671811-71693962:+|nuORF;ENST00000528683.5_1_11:71640101-71701796:+|nuORF;nc|ENSG00000137522|Q9H920-2|RNF121;ENST00000526549.5_1_11:71673326-71707358:+|nuORF;ENSG00000137522|ENST00000361756|RNF121 ENST00000526903.1_1_11:71671811-71693962:+|nuORF ENST00000526903.1_1_11:71671811-71693962:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6914672851562 3 523.63448 1567.88161 NaN NaN NaN NaN NaN NaN NaN 158.12 1 158.12 157.62 158.62 0 0 0 0 0.22632 1 31746 31746 1.4551 0.82762 1 26683 4091 17692 17698 26322 26322 0.12038465061209536 LHYPFVYRRWK 11 Unmodified _LHYPFVYRRWK_ 0 0 0 REV__ENST00000469599.6_1_Y:21872065-21877486:-|nuORF REV__ENST00000469599.6_1_Y:21872065-21877486:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2708740234375 3 522.289372 1563.84629 NaN NaN NaN NaN NaN NaN NaN 144.89 1 139.83 139.33 140.33 -5.0671 0 0 0 0.22632 1 27974 27974 2.732 1.2769 1 + 26684 22015 17693 17699 26323 26323 0.08691802533394366 LIAACVHF 8 Unmodified _LIAACVHF_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2349548339844 2 437.236199 872.457844 NaN NaN NaN NaN NaN NaN NaN 136.51 1 131.67 131.17 132.17 -4.8307 0 0 0 0.21486 1 26287 26287 6.3541 1.5981 1 + 26685 19108 17694 17700 26324 26324 0.016513786878249448 LIAEERRNFL 10 Unmodified _LIAEERRNFL_ 0 0 0 nc|ENSG00000104228|Q9UPQ4-2|TRIM35 nc|ENSG00000104228|Q9UPQ4-2|TRIM35 nc|ENSG00000104228|Q9UPQ4-2|TRIM35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7651977539062 2 630.856586 1259.69862 0.68896 0.00043463 -0.37887 -0.00023901 0.31008 0.00019562 630.8563540873969 105.04 0.55765 105.04 104.76 105.32 0 26 15 2 0 0 0 0.61964 1 20616 20616 18.146 2.8979 1 3341400 26686 12265 17695 17701 26325 26325 0.07915866208759326 LIAHGELIYG 10 Unmodified _LIAHGELIYG_ 0 0 0 REV__CSMD1|p.P1459Qfs*24|1|0.09|ENSG00000183117|chr8:3223840-3223840|G/-|frameshift_variant REV__CSMD1|p.P1459Qfs*24|1|0.09|ENSG00000183117|chr8:3223840-3223840|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7736206054688 2 543.303124 1084.5917 0.3347 0.00018185 -2.1131 -0.0011481 -1.7784 -0.00096622 543.8018411863658 131.79 0.31259 131.79 131.61 131.92 0 10 8 2 0 0 0 0.69553 1 26015 26015 11.64 0.81637 1 1259900 + 26687 13591 17696 17702 26326 26326 0.05278315994382865 LIAQMHKAM 9 Unmodified _LIAQMHKAM_ 0 0 0 tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1 tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1 tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2763671875 2 521.780447 1041.54634 0.17037 8.8894E-05 1.1266 0.00058783 1.297 0.00067673 522.282588132712 77.126 0.34858 73.467 73.224 73.573 -3.6588 10 9 2 0 0 0 0.67531 1 14663 14663 7.9102 0.3012 1 674880 26688 26158 17697 17703 26327 26327 0.027230509359696953 LIAQPDHSY 9 Unmodified _LIAQPDHSY_ 0 0 0 SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2614135742188 2 522.261456 1042.50836 -0.60117 -0.00031397 0.49993 0.0002611 -0.10124 -5.2873E-05 522.2617085125579 83.3 0.79724 79.426 78.916 79.713 -3.8736 42 22 2 0 0 0 0.57447 1 15837 15837 14.838 0.93222 1 3135800 26689 4742 17698 17704 26328 26328 -0.011194204534831442 LIASRDIAA 9 Unmodified _LIASRDIAA_ 0 0 0 ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A ENST00000437519.5_1_12:123868737-123892247:+|nuORF ENST00000437519.5_1_12:123868737-123892247:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2519836425781 2 465.274367 928.53418 NaN NaN NaN NaN NaN NaN NaN 100.59 1 96.296 95.796 96.796 -4.297 0 0 0 0.18705 1 19242 19242 25.399 0 1 26690 6881 17699 17705 26329 26329 0.06705473788792915 LICKHSQS 8 Unmodified _LICKHSQS_ 0 0 0 REV__ENST00000552801.6_1_12:112371805-112450827:-|nuORF REV__ENST00000552801.6_1_12:112371805-112450827:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23785400390625 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 176.48 1 171.58 171.08 172.08 -4.9008 0 0 0 0.21486 1 35187 35187 2.0598 0.21551 1 + 26691 19401 17700 17706 26330 26330 0.003732718485366604 LICKSRSL 8 Unmodified _LICKSRSL_ 0 0 0 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant;F5|p.G1754Efs*13|1|0.41|ENSG00000198734|chr1:169529768-169529768|T/-|frameshift_variant;ENSG00000198734|ENST00000367797|F5;CON__Q28107 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant;CON__Q28107 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.244873046875 2 460.273312 918.532072 NaN NaN NaN NaN NaN NaN NaN 80.861 1 77.022 76.522 77.522 -3.8392 0 0 0 0.21323 1 15349 15349 14.582 1.0738 1 + 26692 7482;684 17701 17707 26331 26331 0.06954721779345618 LICLGIILA 9 Unmodified _LICLGIILA_ 0 0 0 ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4 ENST00000558906.5_1_15:50152393-50311102:-|nuORF ENST00000558906.5_1_15:50152393-50311102:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1663513183594 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 41.713 1 39.062 38.562 39.562 -2.651 0 0 0 0.19636 1 7499 7499 2.4985 0 1 26693 2214 17702 17708 26332 26332 0.11602251104363859 LICNDADLCD 10 Unmodified _LICNDADLCD_ 0 0 0 ENSG00000268223|ENST00000686077|ARL14EPL ENSG00000268223|ENST00000686077|ARL14EPL ENSG00000268223|ENST00000686077|ARL14EPL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7687377929688 2 547.728274 1093.442 0.15602 8.5455E-05 -0.91558 -0.00050149 -0.75956 -0.00041604 547.7275339383741 95.832 0.50859 91.641 91.311 91.819 -4.1911 20 14 2 0 0 0 0.63858 1 18241 18241 17.113 1.2657 1 2324500 26694 7995 17703 17709 26333 26333 -0.10098740402031581 LICQLVVQ 8 Unmodified _LICQLVVQ_ 0 0 0 REV__ENST00000480296.5_1_3:50385794-50386017:-|nuORF REV__ENST00000480296.5_1_3:50385794-50386017:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2250061035156 2 458.270238 914.525924 NaN NaN NaN NaN NaN NaN NaN 52.053 1 52.053 51.553 52.553 0 0 0 0 0.21486 1 9888 9888 12.532 3.1484 1 + 26695 22162 17704 17710 26334 26334 0.06524203547814977 LICYISSY 8 Unmodified _LICYISSY_ 0 0 0 REV__ENST00000557508.5_1_14:58738596-58738665:+|nuORF REV__ENST00000557508.5_1_14:58738596-58738665:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2431640625 2 481.238604 960.462655 -0.1202 -5.7843E-05 0.31638 0.00015225 0.19618 9.4411E-05 481.24257420252286 104.05 0.13463 99.832 99.756 99.89 -4.2183 7 3 3 0 0 0 8448 1 20473 20473 0.12286 0 1 802930 + 26696 23011 17705 17711 26335 26335 -0.019157819600764014 LIDASMDTN 9 Unmodified _LIDASMDTN_ 0 0 0 REV__ENSG00000255408|ENST00000522353|PCDHA3 REV__ENSG00000255408|ENST00000522353|PCDHA3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2609558105469 2 490.223682 978.432811 NaN NaN NaN NaN NaN NaN NaN 82.601 1 82.601 82.101 83.101 0 0 0 0 0.22251 1 16097 16097 16.942 2.3606 1 + 26697 19855 17706 17712 26336 26336 -0.05726765696056191 LIDDPLPVVD 10 Unmodified _LIDDPLPVVD_ 0 0 0 KIF17|p.T729I|1|0.11|ENSG00000117245|chr1:20684854-20684854|G/A|missense_variant KIF17|p.T729I|1|0.11|ENSG00000117245|chr1:20684854-20684854|G/A|missense_variant KIF17|p.T729I|1|0.11|ENSG00000117245|chr1:20684854-20684854|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7828369140625 2 548.300247 1094.58594 0.37342 0.00020474 -0.78461 -0.0004302 -0.4112 -0.00022546 548.2995406143109 122.65 0.99453 118.12 117.58 118.58 -4.5305 56 25 3 0 0 0 0.57735 1 23524 23524 20.454 2.3073 1 6101500 26698 11997 17707 17713 26337 26337 0.042431726920540314 LIDISAHWM 9 Unmodified _LIDISAHWM_ 0 0 0 nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5 nc|ENSG00000171365|P51795-1|CLCN5 nc|ENSG00000171365|P51795-1|CLCN5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7904663085938 2 543.276052 1084.53755 0.1467 7.9697E-05 -2.3712 -0.0012882 -2.2245 -0.0012085 543.7749161482025 58.631 0.83362 55.72 55.168 56.001 -2.9105 46 23 3 0 0 0 0.59384 1 11269 11269 13.508 1.8676 1 1845200 26699 6139 17708 17714 26338 26338 -0.0013359942884108023 LIDMERQG 8 Unmodified _LIDMERQG_ 0 0 0 ENST00000463920.5_1_1:154573515-154574721:-|nuORF;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR ENST00000463920.5_1_1:154573515-154574721:-|nuORF ENST00000463920.5_1_1:154573515-154574721:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24371337890625 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 64.44 1 61.184 60.684 61.684 -3.2567 0 0 0 0.22934 1 12099 12099 0.68139 0.42991 1 26700 5264 17709 17715 26339 26339 -0.011950493596373235 LIDSQNNQY 9 Unmodified _LIDSQNNQY_ 0 0 0 nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7691040039062 2 547.759278 1093.504 0.61565 0.00033723 -1.2792 -0.00070071 -0.66359 -0.00036349 547.7584957851597 44.711 0.73484 44.711 44.288 45.023 0 38 20 2 0 0 0 0.58699 1 8365 8365 32.305 27.009 1 2359700 26701 4824 17710 17716 26340 26340 -0.03900929667042874 LIDSQNNQY 9 Unmodified _LIDSQNNQY_ 0 0 0 nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7796020507812 2 547.759278 1093.504 0.12092 6.6234E-05 -0.16482 -9.0284E-05 -0.043907 -2.4051E-05 547.7591233650057 47.783 0.74522 44.914 44.6 45.345 -2.869 45 20 3 0 0 0 0.40602 1 9084 9084 25.399 13.159 1 5572900 26702 4824 17710 17716 26341 26341 -0.03900929667042874 LIDSQNNQY 9 Unmodified _LIDSQNNQY_ 0 0 0 nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7781982421875 2 547.759278 1093.504 0.034965 1.9152E-05 0.057958 3.1747E-05 0.092923 5.09E-05 547.7593199418462 47.927 0.77366 44.985 44.651 45.425 -2.9421 47 21 4 0 0 0 0.10573 2 8776 8776;8818 53.833 31.097 1 4720600 26703 4824 17710 17716 26342;26343 26342 -0.03900929667042874 LIDSQNNQY 9 Unmodified _LIDSQNNQY_ 0 0 0 nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 nc|ENSG00000150403|Q6UWJ1-3|TMCO3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7930297851562 2 547.759278 1093.504 -0.011568 -6.3363E-06 0.080758 4.4236E-05 0.069191 3.79E-05 547.7592979077787 47.948 0.72677 44.998 44.638 45.365 -2.9499 41 20 3 0 0 0 0.30618 1 8807 8807 31.268 15.119 1 5231500 26704 4824 17710 17716 26344 26344 -0.03900929667042874 LIDVKGSVIK 10 Unmodified _LIDVKGSVIK_ 0 0 0 REV__nc|ENSG00000134333|P00338-4|LDHA REV__nc|ENSG00000134333|P00338-4|LDHA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5596618652344 3 357.897258 1070.66995 -0.19789 -7.0824E-05 0.22051 7.892E-05 0.022623 8.0966E-06 357.89780129279774 25.443 3.8349 25.443 25.186 29.021 0 323 110 6 0 0 0 0.25101 1 4467 4467 74.772 0 1 3850099999.9999995 + 26705 24045 17711 17717 26345 26345 0.1374374857962266 LIDVKGSVIK 10 Unmodified _LIDVKGSVIK_ 0 0 0 REV__nc|ENSG00000134333|P00338-4|LDHA REV__nc|ENSG00000134333|P00338-4|LDHA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5633544921875 3 357.897258 1070.66995 0.69282 0.00024796 -0.69147 -0.00024748 0.0013476 4.8232E-07 357.897512082681 27.14 3.6013 25.358 25.096 28.698 -1.7821 336 102 6 0 0 0 0.25041 1 4884 4884 66.683 0 1 3953499999.9999995 + 26706 24045 17711 17717 26346 26346 0.1374374857962266 LIDVKSKI 8 Unmodified _LIDVKSKI_ 0 0 0 REV__tr|U7T4Y6|U7T4Y6_FUSNUL-threonylcarbamoyladenylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00240PE=3SV=1 REV__tr|U7T4Y6|U7T4Y6_FUSNUL-threonylcarbamoyladenylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00240PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23797607421875 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 98.329 1 94.06 93.56 94.56 -4.2692 0 0 0 0.21486 1 18794 18794 5.7604 0 1 + 26707 25401 17712 17718 26347 26347 0.11936118971038923 LIEAGSPFPL 10 Unmodified _LIEAGSPFPL_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.265869140625 2 522.292225 1042.5699 NaN NaN NaN NaN NaN NaN NaN 138.94 1 133.99 133.49 134.49 -4.952 0 0 0 0.22576 1 26724 26724 14.838 0 1 + 26708 14574 17713 17719 26348 26348 0.05031511245783804 LIEDPTCR 8 Unmodified _LIEDPTCR_ 0 0 0 REV__ENST00000305135.9_1_3:183528513-183528570:+|nuORF REV__ENST00000305135.9_1_3:183528513-183528570:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1607360839844 3 316.160265 945.458967 NaN NaN NaN NaN NaN NaN NaN 25.844 1 24.209 23.709 24.709 -1.6347 0 0 0 0.21486 1 4266 4266 1.6526 0 1 + 26709 20433 17714 17720 26349 26349 -0.015944517339335107 LIEHPYGIC 9 Unmodified _LIEHPYGIC_ 0 0 0 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.256591796875 2 522.762778 1043.511 0.72173 0.00037729 -0.47235 -0.00024693 0.24938 0.00013037 522.7622998430681 108.75 0.72337 104.57 104.11 104.83 -4.1826 30 20 2 0 0 0 0.70873 1 20954 20954 24.674 2.2213 1 1265400 + 26710 16771 17715 17721 26350 26350 -0.009012883201648947 LIEMIYCY 8 Unmodified _LIEMIYCY_ 0 0 0 ENSG00000166257|ENST00000299333|SCN3B;SCN3B|p.V184D|1|0.19|ENSG00000166257|chr11:123638219-123638219|A/T|missense_variant;ENST00000527125.1_1_11:123504853-123509099:-|nuORF ENSG00000166257|ENST00000299333|SCN3B ENSG00000166257|ENST00000299333|SCN3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6871948242188 2 524.248114 1046.48168 -0.1429 -7.4915E-05 -3.2168 -0.0016864 -3.3597 -0.0017613 524.2447684898856 80.922 0.65987 77.365 76.851 77.511 -3.557 32 18 3 0 0 0 1.0095 1 15711 15711 5.7604 3.1829 1 1884000 26711 5707 17716 17722 26351 26351 -0.039705686606566815 LIEVAIDSV 9 Unmodified _LIEVAIDSV_ 0 0 0 REV__ENST00000452398.5_1_3:19388190-19491848:+|nuORF REV__ENST00000452398.5_1_3:19388190-19491848:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.1855773925781 3 320.186697 957.538263 NaN NaN NaN NaN NaN NaN NaN 98.131 1 94.033 93.533 94.533 -4.0978 0 0 0 0.23508 1 19268 19268 5.2969 0 1 + 26712 18875 17717 17723 26352 26352 0.057795184918518316 LIFCLELDI 9 Unmodified _LIFCLELDI_ 0 0 0 ENST00000345541.6_1_10:28900143-28900338:+|nuORF ENST00000345541.6_1_10:28900143-28900338:+|nuORF ENST00000345541.6_1_10:28900143-28900338:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20166015625 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 123.39 1 118.8 118.3 119.3 -4.5926 0 0 0 0.23508 1 23753 23753 11.495 0.6952 1 26713 8908 17718 17724 26353 26353 0.04233322170921383 LIFGQGNKIY 10 Unmodified _LIFGQGNKIY_ 0 0 0 REV__ENSG00000181467|ENST00000323534|RAP2B REV__ENSG00000181467|ENST00000323534|RAP2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3213500976562 2 576.824224 1151.63389 0.42151 0.00024314 0.18661 0.00010764 0.60812 0.00035078 576.824727224109 156.78 0.49429 151.51 151.3 151.8 -5.2712 17 13 2 0 0 0 0.83242 1 30383 30383 14.838 3.3436 1 1871300 + 26714 15741 17719 17725 26354 26354 0.06414291402757044 LIFHMDKV 8 Unmodified _LIFHMDKV_ 0 0 0 ENSG00000157823|ENST00000336418|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN ENSG00000157823|ENST00000336418|AP3S2 ENSG00000157823|ENST00000336418|AP3S2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 502.1234436035156 2 501.775688 1001.53682 0.15419 7.7371E-05 2.4071 0.0012078 2.5613 0.0012852 501.7770447635732 69.422 0.36183 65.886 65.649 66.011 -3.5362 13 9 2 0 0 0 0.72861 1 13073 13073 10.183 1.5901 1 1197000 26715 5141 17720 17726 26355 26355 0.036116059221058094 LIFKLYQR 8 Unmodified _LIFKLYQR_ 0 0 0 nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49584731-49620353:+|nuORF nc|ENSG00000156958|Q01415-2|GALK2 nc|ENSG00000156958|Q01415-2|GALK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2671508789062 2 540.831852 1079.64915 0.27104 0.00014659 2.0219 0.0010935 2.2929 0.0012401 540.8321006439361 160.84 0.35458 155.61 155.33 155.69 -5.2299 10 9 2 0 0 0 0.89766 1 31244 31244 0.62683 0 1 1167700 26716 5111 17721 17727 26356 26356 0.11251202990615639 LIFMYFFRYNR 11 Unmodified _LIFMYFFRYNR_ 0 0 0 REV__ENST00000523468.5_1_6:157963626-158049550:+|nuORF REV__ENST00000523468.5_1_6:157963626-158049550:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.406005859375 2 785.405389 1568.79623 NaN NaN NaN NaN NaN NaN NaN 77.728 1 74.265 73.765 74.765 -3.4633 0 0 0 0.23698 1 15175 15175 1.4819 0 1 + 26717 18447 17722 17728 26357 26357 0.0345793181325007 LIFPKQAFD 9 Unmodified _LIFPKQAFD_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2011413574219 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 128.09 1 123.35 122.85 123.85 -4.7408 0 0 0 0.23508 1 24646 24646 2.4985 0.21571 1 26718 5519 17723 17729 26358 26358 0.05019217482708882 LIFVLGSAT 9 Unmodified _LIFVLGSAT_ 0 0 0 REV__ENSG00000064115|ENST00000343028|TM7SF3 REV__ENSG00000064115|ENST00000343028|TM7SF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2471618652344 2 460.776211 919.537869 0.26322 0.00012129 0.56068 0.00025835 0.8239 0.00037963 460.7762229026897 25.072 0.34383 25.072 24.947 25.29 0 12 9 2 0 0 0 0.8319 1 4316 4316 12.532 5.2423 1 550170 + 26719 14163 17724 17730 26359 26359 0.07488143562670757 LIGFMSLATL 10 Unmodified _LIGFMSLATL_ 0 0 0 SYNRG|p.N1211D|1|0.12|ENSG00000275066|chr17:37536014-37536014|T/C|missense_variant;nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG SYNRG|p.N1211D|1|0.12|ENSG00000275066|chr17:37536014-37536014|T/C|missense_variant SYNRG|p.N1211D|1|0.12|ENSG00000275066|chr17:37536014-37536014|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2863159179688 2 533.304278 1064.594 0.43017 0.00022941 0.41696 0.00022237 0.84713 0.00045178 533.80516900975 137.74 0.17369 132.82 132.69 132.86 -4.9216 8 4 3 0 0 0 0.77872 1 26461 26461 14.838 8.1151 1 1578100 26720 8022 17725 17731 26360 26360 0.06429028407842452 LIGGPNPNSLS 11 Unmodified _LIGGPNPNSLS_ 0 0 0 nc|ENSG00000118094|O43280-2|TREH;ENSG00000118094|ENST00000264029|TREH nc|ENSG00000118094|O43280-2|TREH nc|ENSG00000118094|O43280-2|TREH MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 534.7302856445312 2 534.787838 1067.56112 NaN NaN NaN NaN NaN NaN NaN 164.44 1 159.65 159.15 160.15 -4.7898 0 0 0 0.22943 1 32865 32865 8.7454 0.58988 1 26721 3015 17726 17732 26361 26361 0.030045376093539744 LIGHSLESDPL 11 Unmodified _LIGHSLESDPL_ 0 0 0 REXO1|p.L1148P|1|0.22|ENSG00000079313|chr19:1816444-1816444|A/G|missense_variant REXO1|p.L1148P|1|0.22|ENSG00000079313|chr19:1816444-1816444|A/G|missense_variant REXO1|p.L1148P|1|0.22|ENSG00000079313|chr19:1816444-1816444|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2644653320312 2 590.814053 1179.61355 0.16022 9.4661E-05 0.24518 0.00014486 0.4054 0.00023952 590.8141492605118 90.811 0.62001 87.034 86.677 87.297 -3.7779 24 17 2 0 0 0 0.8663 1 17399 17399 0.11104 0 1 1659300 26722 25605 17727 17733 26362 26362 0.030930759523016604 LIGHWIGIDK 10 Unmodified _LIGHWIGIDK_ 0 0 0 REV__ANO4|p.Y771H|1|0.28|ENSG00000151572|chr12:101111571-101111571|T/C|missense_variant REV__ANO4|p.Y771H|1|0.28|ENSG00000151572|chr12:101111571-101111571|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3175659179688 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 47.734 1 44.792 44.292 45.292 -2.9421 0 0 0 0.22576 1 8710 8710 14.838 1.3304 1 + 26723 13068 17728 17734 26363 26363 0.08057997639639325 LIGHWIGIDK 10 Unmodified _LIGHWIGIDK_ 0 0 0 REV__ANO4|p.Y771H|1|0.28|ENSG00000151572|chr12:101111571-101111571|T/C|missense_variant REV__ANO4|p.Y771H|1|0.28|ENSG00000151572|chr12:101111571-101111571|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33203125 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 47.914 1 44.972 44.472 45.472 -2.9421 0 0 0 0.22552 1 8741 8741 18.146 2.2992 1 + 26724 13068 17728 17734 26364 26364 0.08057997639639325 LIGHWIGIDK 10 Unmodified _LIGHWIGIDK_ 0 0 0 REV__ANO4|p.Y771H|1|0.28|ENSG00000151572|chr12:101111571-101111571|T/C|missense_variant REV__ANO4|p.Y771H|1|0.28|ENSG00000151572|chr12:101111571-101111571|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3345336914062 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 47.73 1 44.78 44.28 45.28 -2.9499 0 0 0 0.22535 1 8721 8721 20.454 5.6154 1 + 26725 13068 17728 17734 26365 26365 0.08057997639639325 LIGKKGQQKTV 11 Unmodified _LIGKKGQQKTV_ 0 0 0 ENSG00000164032|ENST00000296417|H2AZ1;ENST00000511319.5_1_4:100869621-100871200:-|nuORF ENSG00000164032|ENST00000296417|H2AZ1 ENSG00000164032|ENST00000296417|H2AZ1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 400.8624572753906 3 400.587195 1198.73976 NaN NaN NaN NaN NaN NaN NaN 14.325 1 14.325 13.825 14.825 0 0 0 0 0.22632 1 2128 2128 5.4027 2.3304 1 26726 5497 17729 17735 26366 26366 0.14833627248231096 LIGRWWYT 8 Unmodified _LIGRWWYT_ 0 0 0 REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7709350585938 2 547.792727 1093.5709 NaN NaN NaN NaN NaN NaN NaN 116.04 1 111.55 111.05 112.05 -4.486 0 0 0 0.21486 1 22878 22878 12.532 0 1 + 26727 14201 17730 17736 26367 26367 0.027857704053758425 LIHELLGRKLL 11 Unmodified _LIHELLGRKLL_ 0 0 0 REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 327.2355651855469 4 326.965774 1303.83399 -0.16643 -5.4417E-05 -0.11476 -3.7524E-05 -0.28119 -9.1941E-05 327.2164935992638 175.6 1.9623 170.7 170.17 172.13 -4.9008 74 56 2 0 0 0 0.82353 1 35127 35127 0.50596 0 1 8647400 + 26728 14755 17731 17737 26368 26368 0.19422766070374564 LIHEPPLIL 9 Unmodified _LIHEPPLIL_ 0 0 0 REV__ENSG00000007341|ENST00000358039|ST7L;REV__nc|ENSG00000004866|Q9NRC1-6|ST7 REV__ENSG00000007341|ENST00000358039|ST7L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2620239257812 2 522.826235 1043.63792 -0.49052 -0.00025646 0.51429 0.00026888 0.023773 1.2429E-05 522.8264565755945 156.14 0.83444 150.85 150.65 151.48 -5.2854 39 23 2 0 0 0 0.60698 1 30260 30260 23.148 0 1 2035600 + 26729 13887;13844 17732 17738 26369 26369 0.11784380896460789 LIHFKRWNHRY 11 Unmodified _LIHFKRWNHRY_ 0 0 0 PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20;ENST00000481202.5_1_20:34389438-34450945:+|nuORF;nc|ENSG00000025293|Q9BVI0-2|PHF20 PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6932983398438 3 523.956505 1568.84768 NaN NaN NaN NaN NaN NaN NaN 79.395 1 79.395 78.895 79.895 0 0 0 0 0.22632 1 15450 15450 0.026206 0 1 26730 1139 17733 17739 26370 26370 0.08601436622166148 LIHFKRWNHRY 11 Unmodified _LIHFKRWNHRY_ 0 0 0 PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20;ENST00000481202.5_1_20:34389438-34450945:+|nuORF;nc|ENSG00000025293|Q9BVI0-2|PHF20 PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6932983398438 3 523.956505 1568.84768 NaN NaN NaN NaN NaN NaN NaN 79.404 1 79.404 78.904 79.904 0 0 0 0 0.23594 1 15451 15451 1.4551 0 1 26731 1139 17733 17739 26371 26371 0.08601436622166148 LIHISPKPS 9 Unmodified _LIHISPKPS_ 0 0 0 ENST00000366527.4_3_1:245017685-245017733:-|nuORF ENST00000366527.4_3_1:245017685-245017733:-|nuORF ENST00000366527.4_3_1:245017685-245017733:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 331.20098876953125 3 331.202682 990.586216 NaN NaN NaN NaN NaN NaN NaN 61.592 1 58.352 57.852 58.852 -3.2395 0 0 0 0.23508 1 11531 11531 2.2828 0 1 26732 9042 17734 17740 26372 26372 0.0905463720255284 LIHLEELSL 9 Unmodified _LIHLEELSL_ 0 0 0 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.277099609375 2 533.810782 1065.60701 1.2188 0.00065062 -1.0467 -0.00055873 0.17215 9.1896E-05 533.8101744960209 25.317 0.3819 23.669 23.477 23.859 -1.6482 25 10 3 0 0 0 0.64439 1 4436 4436 0.073264 0 1 2493200 26733 5426 17735 17741 26373 26373 0.07683182791561194 LIHLLGKK 8 Unmodified _LIHLLGKK_ 0 0 0 REV__RBM18|p.R177Gfs*21|1|0.08|ENSG00000119446|chr9:122241928-122241928|T/-|frameshift_variant REV__RBM18|p.R177Gfs*21|1|0.08|ENSG00000119446|chr9:122241928-122241928|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5316467285156 2 461.315838 920.617122 NaN NaN NaN NaN NaN NaN NaN 98.549 1 94.592 94.092 95.092 -3.9564 0 0 0 0.2396 1 18914 18914 0.0082765 0 1 + 26734 24550 17736 17742 26374 26374 0.15363835307459794 LIHMEPYY 8 Unmodified _LIHMEPYY_ 0 0 0 REV__CDC25B|p.Y520H|1|0.21|ENSG00000101224|chr20:3804636-3804636|T/C|missense_variant REV__CDC25B|p.Y520H|1|0.21|ENSG00000101224|chr20:3804636-3804636|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2742919921875 2 533.257328 1064.5001 NaN NaN NaN NaN NaN NaN NaN 111 1 106.57 106.07 107.07 -4.4231 0 0 0 0.21486 1 21866 21866 10.183 1.438 1 + 26735 13339 17737 17743 26375 26375 -0.029566906944637594 LIHPSWVLT 9 Unmodified _LIHPSWVLT_ 0 0 0 PROC|p.M406Wfs*15|1|0.31|ENSG00000115718|chr2:127428767-127428767|G/-|frameshift_variant;ENSG00000115718|ENST00000234071|PROC;nc|ENSG00000115718|P04070-2|PROC PROC|p.M406Wfs*15|1|0.31|ENSG00000115718|chr2:127428767-127428767|G/-|frameshift_variant PROC|p.M406Wfs*15|1|0.31|ENSG00000115718|chr2:127428767-127428767|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2659301757812 2 533.30821 1064.60187 NaN NaN NaN NaN NaN NaN NaN 134.95 1 130.06 129.56 130.56 -4.892 0 0 0 0.23508 1 25921 25921 12.532 0.89125 1 26736 2880 17738 17744 26376 26376 0.07214923719607214 LIHTEPACTGY 11 Unmodified _LIHTEPACTGY_ 0 0 0 ENST00000571914.1_1_17:79605115-79605256:+|nuORF ENST00000571914.1_1_17:79605115-79605256:+|nuORF ENST00000571914.1_1_17:79605115-79605256:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2739868164062 2 602.786981 1203.55941 0.59656 0.0003596 -0.51663 -0.00031142 0.079933 4.8182E-05 602.7867840000891 115.78 0.85934 111.2 110.73 111.59 -4.5815 67 24 4 0 0 0 0.88709 1 22154 22154 8.7454 0 1 17720000 26737 11427 17739 17745 26377 26377 -0.03422839470931649 LIHTNPSVSP 10 Unmodified _LIHTNPSVSP_ 0 0 0 ENST00000452080.5_1_11:124496598-124496825:+|nuORF ENST00000452080.5_1_11:124496598-124496825:+|nuORF ENST00000452080.5_1_11:124496598-124496825:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26953125 2 532.790381 1063.56621 0.4306 0.00022942 3.3475 0.0017835 3.7781 0.0020129 533.293643743153 132.53 0.31635 127.67 127.53 127.85 -4.8528 13 8 2 0 0 0 0.83271 1 25442 25442 7.609 0 1 1273700 26738 9985 17740 17746 26378 26378 0.036968414719467546 LIHVAAYADL 10 Unmodified _LIHVAAYADL_ 0 0 0 nc|ENSG00000165816|Q5GFL6-3|VWA2;nc|ENSG00000165816|Q5GFL6-2|VWA2;ENSG00000165816|ENST00000392982|VWA2 nc|ENSG00000165816|Q5GFL6-3|VWA2 nc|ENSG00000165816|Q5GFL6-3|VWA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7747192382812 2 543.303124 1084.5917 0.3315 0.0001801 -0.88141 -0.00047887 -0.54991 -0.00029877 543.3019690500253 124.48 0.21104 119.84 119.75 119.96 -4.6468 6 5 2 0 0 0 0.40256 1 23950 23950 30.637 3.7529 1 662160 26739 5665 17741 17747 26379 26379 0.05278315994360128 LIHVAAYADL 10 Unmodified _LIHVAAYADL_ 0 0 0 nc|ENSG00000165816|Q5GFL6-3|VWA2;nc|ENSG00000165816|Q5GFL6-2|VWA2;ENSG00000165816|ENST00000392982|VWA2 nc|ENSG00000165816|Q5GFL6-3|VWA2 nc|ENSG00000165816|Q5GFL6-3|VWA2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.303124 1084.5917 0.39791 0.00021619 -0.47274 -0.00025684 -0.074834 -4.0658E-05 543.8041963569151 124.66 0.17664 119.9 119.74 119.92 -4.7681 0.029394 0.00030807 NaN 30.637 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1690200 26740 5665 17741 17747 0.05278315994360128 LIHYAGTVDY 10 Unmodified _LIHYAGTVDY_ 0 0 0 ENSG00000133020|ENST00000403437|MYH8;ENSG00000109061|ENST00000226207|MYH1;MYH8|p.N600Ifs*5|1|0.32|ENSG00000133020|chr17:10409377-10409377|T/-|frameshift_variant;MYH1|p.N889Mfs*24|1|0.19|ENSG00000109061|chr17:10504835-10504835|T/-|frameshift_variant;MYH8|p.I922Nfs*6|1|0.33|ENSG00000133020|chr17:10401709-10401710|-/T|frameshift_variant;MYH8|p.E1123Gfs*19|1|0.39|ENSG00000133020|chr17:10400757-10400758|-/C|frameshift_variant;MYH8|p.K1582Nfs*3|1|0.04|ENSG00000133020|chr17:10395349-10395350|-/G|frameshift_variant;ENSG00000109063|ENST00000583535|MYH3 ENSG00000133020|ENST00000403437|MYH8;ENSG00000109063|ENST00000583535|MYH3 ENSG00000133020|ENST00000403437|MYH8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3213500976562 2 576.290214 1150.56587 NaN NaN NaN NaN NaN NaN NaN 166.42 1 166.42 165.92 166.92 0 0 0 0 2.8426 1 33902 33902 1.0651 0 1 26741 2511;2513 17742 17748 26380 26380 -0.0033857824791994062 LIIIILKQKE 10 Unmodified _LIIIILKQKE_ 0 0 0 ENSG00000164128|ENST00000296533|NPY1R ENSG00000164128|ENST00000296533|NPY1R ENSG00000164128|ENST00000296533|NPY1R MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 404.2750244140625 3 404.275958 1209.80605 NaN NaN NaN NaN NaN NaN NaN 70.847 1 70.847 70.347 71.347 0 0 0 0 0.22588 1 13725 13725 1.7423 1.583 1 26742 5511 17743 17749 26381 26381 0.2095344309027496 LIIKFLVGLI 10 Unmodified _LIIKFLVGLI_ 0 0 0 REV__ENST00000515662.6_1_3:9413140-9413203:+|nuORF REV__ENST00000515662.6_1_3:9413140-9413203:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 564.7256469726562 2 564.891378 1127.7682 0.29254 0.00016525 3.4008 0.0019211 3.6934 0.0020863 565.3937620585117 165.89 0.16737 165.89 165.8 165.97 0 6 4 2 0 0 0 1.1344 1 33695 33695 0.043787 0.043787 1 24547000 + 26743 22589 17744 17750 26382 26382 0.2094297689548057 LIIKFVQFRP 10 Unmodified _LIIKFVQFRP_ 0 0 0 REV__ENST00000465804.5_1_3:149237183-149237372:-|nuORF REV__ENST00000465804.5_1_3:149237183-149237372:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7669067382812 2 630.894983 1259.77541 NaN NaN NaN NaN NaN NaN NaN 135.69 1 135.69 135.19 136.19 0 0 0 0 2.8426 1 26881 26881 0.69767 0 1 + 26744 21956 17745 17751 26383 26383 0.15591709495879513 LIIKFVQFRP 10 Unmodified _LIIKFVQFRP_ 0 0 0 REV__ENST00000465804.5_1_3:149237183-149237372:-|nuORF REV__ENST00000465804.5_1_3:149237183-149237372:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7564086914062 2 630.894983 1259.77541 NaN NaN NaN NaN NaN NaN NaN 94.725 1 90.844 90.344 91.344 -3.881 0 0 0 2.8426 1 18176 18176 0.69767 0 1 + 26745 21956 17745 17751 26384 26384 0.15591709495879513 LIILPLILLKK 11 Unmodified _LIILPLILLKK_ 0 0 0 REV__tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1 REV__tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 426.3139953613281 3 426.315865 1275.92577 NaN NaN NaN NaN NaN NaN NaN 174.06 1 174.06 173.56 174.56 0 0 0 0 0.23698 1 36022 36022 0 0 1 + 26746 25211 17746 17752 26385 26385 0.2988405643484384 LIIRRLHKV 9 Unmodified _LIIRRLHKV_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 383.2466125488281 3 383.264387 1146.77133 NaN NaN NaN NaN NaN NaN NaN 179.01 1 174.22 173.72 174.72 -4.7898 0 0 0 0.23508 1 36627 36627 0.23584 0 1 26747 1613 17747 17753 26386 26386 0.20381664792830634 LIIVIAHR 8 Unmodified _LIIVIAHR_ 0 0 0 ENST00000515388.1_1_4:144316123-144316261:+|nuORF ENST00000515388.1_1_4:144316123-144316261:+|nuORF ENST00000515388.1_1_4:144316123-144316261:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 312.21002197265625 3 312.2114 933.612371 NaN NaN NaN NaN NaN NaN NaN 61.662 1 58.292 57.792 58.792 -3.3694 0 0 0 0.21486 1 11498 11498 0.40072 0 1 26748 10785 17748 17754 26387 26387 0.14290951164696253 LIIYQPLLP 9 Unmodified _LIIYQPLLP_ 0 0 0 REV__ENST00000598044.1_1_19:50861812-50862477:-|nuORF REV__ENST00000598044.1_1_19:50861812-50862477:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.55902099609375 3 357.226716 1068.65832 -0.20186 -7.2109E-05 1.1952 0.00042695 0.99333 0.00035484 357.56199176585244 25.499 0.48586 25.499 25.358 25.843 0 20 13 2 0 0 0 0.11483 2 4401 4401;4403 22.736 3.4793 1 7455900 + 26749 23392 17749 17755 26388;26389 26388 0.12673551556281382 LIKAFAVSL 9 Unmodified _LIKAFAVSL_ 0 0 0 REV__tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1 REV__tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7844543457031 2 481.307678 960.600803 0.11518 5.5437E-05 -0.12132 -5.8394E-05 -0.0061425 -2.9565E-06 481.307569004625 59.847 0.55777 56.533 56.243 56.801 -3.3139 26 15 2 0 0 0 0.78323 1 11119 11119 4.3292 0 1 2010100 + 26750 24992 17750 17756 26390 26390 0.1189270935069544 LIKEDREDAR 10 Unmodified _LIKEDREDAR_ 0 0 0 REV__ENSG00000240720|ENST00000458448|LRRD1 REV__ENSG00000240720|ENST00000458448|LRRD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7616577148438 2 622.833308 1243.65206 NaN NaN NaN NaN NaN NaN NaN 125.54 1 120.77 120.27 121.27 -4.7681 0 0 0 0.22588 1 24094 24094 13.042 5.7532 1 + 26751 19782 17751 17757 26391 26391 0.039983815868026795 LIKKHLLPLW 10 Unmodified _LIKKHLLPLW_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;ENST00000464072.1_1_2:191843483-191848388:-|nuORF nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7716064453125 2 630.913176 1259.8118 NaN NaN NaN NaN NaN NaN NaN 120.56 1 116.04 115.54 116.54 -4.5221 0 0 0 2.8426 1 23772 23772 0.0013812 0 1 26752 2854 17752 17758 26392 26392 0.19228586392614488 LIKKKFLR 8 Unmodified _LIKKKFLR_ 0 0 0 ENST00000381227.5_1_4:57888364-57889501:+|nuORF ENST00000381227.5_1_4:57888364-57889501:+|nuORF ENST00000381227.5_1_4:57888364-57889501:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6936645507812 2 523.365862 1044.71717 -0.09199 -4.8144E-05 -0.07698 -4.0289E-05 -0.16897 -8.8433E-05 523.3667749799131 148.88 0.10324 144.17 144.12 144.22 -4.7095 4 2 2 0 0 0 1.0231 1 29573 29573 4.3292 0 1 1550200 26753 9325 17753 17759 26393 26393 0.19660072641272563 LIKKNTHNI 9 Unmodified _LIKKNTHNI_ 0 0 0 REV__ENST00000287218.8_1_6:38050174-38084360:+|nuORF REV__ENST00000287218.8_1_6:38050174-38084360:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2603759765625 2 540.82984 1079.64513 0.14218 7.6895E-05 -3.0214 -0.001634 -2.8792 -0.0015571 541.3285328913689 136.68 0.31789 131.78 131.58 131.9 -4.9002 11 8 2 0 0 0 0.80521 1 26285 26285 15.847 13.112 1 1146400 + 26754 20337 17754 17760 26394 26394 0.10849113496897189 LIKKVSKKIF 10 Unmodified _LIKKVSKKIF_ 0 0 0 REV__tr|U7SQT0|U7SQT0_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01677PE=4SV=1 REV__tr|U7SQT0|U7SQT0_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01677PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2777099609375 2 602.413009 1202.81146 0.46161 0.00027808 2.9901 0.0018013 3.4517 0.0020794 602.4129494857655 153.33 0.17578 148.11 148 148.18 -5.2209 6 4 2 0 0 0 0.91149 1 29711 29711 0.45834 0 1 680380 + 26755 25015 17755 17761 26395 26395 0.21817166672735766 LIKLIPHTVLL 11 Unmodified _LIKLIPHTVLL_ 0 0 0 REV__ENSG00000125863|ENST00000347364|MKKS REV__ENSG00000125863|ENST00000347364|MKKS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7659912109375 2 630.426116 1258.83768 NaN NaN NaN NaN NaN NaN NaN 92.17 1 88.245 87.745 88.745 -3.9251 0 0 0 0.23199 1 18047 18047 6.7232 0 1 + 26756 15838 17756 17762 26396 26396 0.21861435844220978 LIKLIPHTVLL 11 Unmodified _LIKLIPHTVLL_ 0 0 0 REV__ENSG00000125863|ENST00000347364|MKKS REV__ENSG00000125863|ENST00000347364|MKKS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.748779296875 2 630.426116 1258.83768 NaN NaN NaN NaN NaN NaN NaN 92.187 1 88.262 87.762 88.762 -3.9251 0 0 0 0.23199 1 18051 18051 6.7232 0 1 + 26757 15838 17756 17762 26397 26397 0.21861435844220978 LIKNESEF 8 Unmodified _LIKNESEF_ 0 0 0 REV__ENSG00000059588|ENST00000040877|TARBP1 REV__ENSG00000059588|ENST00000040877|TARBP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2590637207031 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 136.97 1 132.33 131.83 132.83 -4.6413 0 0 0 0.19492 1 27029 27029 26.341 0.94196 1 + 26758 14136 17757 17763 26398 26398 0.012100613149982564 LIKNGFTLI 9 Unmodified _LIKNGFTLI_ 0 0 0 REV__tr|U7T2A5|U7T2A5_FUSNUDephospho-CoAkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaEPE=3SV=1 REV__tr|U7T2A5|U7T2A5_FUSNUDephospho-CoAkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaEPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 509.5285949707031 2 509.81841 1017.62227 0.10789 5.5006E-05 -0.46819 -0.00023869 -0.3603 -0.00018369 509.81818072591483 165.41 0.37288 160.62 160.47 160.85 -4.7898 20 10 3 0 0 0 0.59384 1 33096 33096 13.508 0.97634 1 41753000 + 26759 25318 17758 17764 26399 26399 0.11416094379421793 LIKPTSLVQS 10 Unmodified _LIKPTSLVQS_ 0 0 0 ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2 ENST00000590127.5_1_18:44407908-44497416:-|nuORF ENST00000590127.5_1_18:44407908-44497416:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7700805664062 2 543.331882 1084.64921 0.18421 0.00010009 0.76054 0.00041323 0.94475 0.00051331 543.3322661576167 26.916 0.21134 24.994 24.877 25.088 -1.9222 8 5 2 0 0 0 0.84217 1 4468 4468 20.415 0 1 321260 26760 11596 17759 17765 26400 26400 0.11027158199954101 LIKPVQRVL 9 Unmodified _LIKPVQRVL_ 0 0 0 nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2 nc|ENSG00000146426|Q8IVF5-3|TIAM2 nc|ENSG00000146426|Q8IVF5-3|TIAM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2717895507812 2 533.360776 1064.707 NaN NaN NaN NaN NaN NaN NaN 166.34 1 161.55 161.05 162.05 -4.7898 0 0 0 0.19632 1 33405 33405 0.40827 0.335 1 26761 4655 17760 17766 26401 26401 0.17723464916048215 LIKQKRIF 8 Unmodified _LIKQKRIF_ 0 0 0 REV__nc|ENSG00000144285|P35498-3|SCN1A REV__nc|ENSG00000144285|P35498-3|SCN1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6941528320312 2 523.347669 1044.68079 0.35705 0.00018686 -4.1762 -0.0021856 -3.8192 -0.0019987 523.8443934893771 144.94 0.17155 139.99 139.93 140.1 -4.9445 7 4 3 0 0 0 0.8748 1 28020 28020 18.373 8.8291 1 1102900 + 26762 16775 17761 17767 26402 26402 0.16023195744537588 LIKRNKQTY 9 Unmodified _LIKRNKQTY_ 0 0 0 nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28 nc|ENSG00000108107|P46779-4|RPL28 nc|ENSG00000108107|P46779-4|RPL28 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 388.5503234863281 3 388.568024 1162.68224 -2.2422 -0.00087124 2.2167 0.00086133 -0.025491 -9.9051E-06 388.5686434158455 15.365 0.10607 14.012 13.922 14.029 -1.3534 4 2 2 0 0 0 0.60489 1 2101 2101 2.4985 1.5362 1 117340 26763 2459 17762 17768 26403 26403 0.10740785042662537 LIKRNKQTY 9 Unmodified _LIKRNKQTY_ 0 0 0 nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28 nc|ENSG00000108107|P46779-4|RPL28 nc|ENSG00000108107|P46779-4|RPL28 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 388.568024 1162.68224 -0.80874 -0.00031425 0.98051 0.00038099 0.17177 6.6744E-05 388.5684205643716 15.283 0.14155 14.168 14.096 14.237 -1.1142 0.064678 -3.0229E-05 NaN 2.4985 7 3 3 NaN NaN NaN NaN 0 NaN NaN 0 378940 26764 2459 17762 17768 0.10740785042662537 LIKRNKQTY 9 Unmodified _LIKRNKQTY_ 0 0 0 nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28 nc|ENSG00000108107|P46779-4|RPL28 nc|ENSG00000108107|P46779-4|RPL28 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 388.568024 1162.68224 -0.58562 -0.00022755 0.78653 0.00030562 0.20091 7.8069E-05 388.5681562394079 15.353 0.13451 14.131 14.032 14.166 -1.2219 0.027194 -0.00025635 NaN 2.4985 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 197070 26765 2459 17762 17768 0.10740785042662537 LIKTDDLG 8 Unmodified _LIKTDDLG_ 0 0 0 REV__ENSG00000090861|ENST00000261772|AARS1 REV__ENSG00000090861|ENST00000261772|AARS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2347717285156 2 437.74765 873.480748 -0.15665 -6.8574E-05 3.7787 0.0016541 3.6221 0.0015856 437.7507088814279 65.414 0.10339 65.414 65.345 65.448 0 4 2 2 0 0 0 1.0095 1 12605 12605 5.7604 0 1 593440 + 26766 14554 17763 17769 26404 26404 0.038946762862906326 LIKTHAVSII 10 Unmodified _LIKTHAVSII_ 0 0 0 REV__ENSG00000178338|ENST00000322434|ZNF354B REV__ENSG00000178338|ENST00000322434|ZNF354B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7711181640625 2 547.850242 1093.68593 NaN NaN NaN NaN NaN NaN NaN 104.52 1 100.3 99.799 100.8 -4.2183 0 0 0 0.22588 1 20560 20560 6.7232 0 1 + 26767 18601 17764 17770 26405 26405 0.14283454816518315 LIKVLEKQSKL 11 Unmodified _LIKVLEKQSKL_ 0 0 0 REV__nc|ENSG00000095383|Q9BYX2-4|TBC1D2 REV__nc|ENSG00000095383|Q9BYX2-4|TBC1D2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 649.8118286132812 2 649.923938 1297.83332 NaN NaN NaN NaN NaN NaN NaN 172.17 1 167.29 166.79 167.79 -4.881 0 0 0 0.22632 1 34158 34158 1.4551 1.4492 1 + 26768 14608 17765 17771 26406 26406 0.19631926630654561 LIKVVKVPQK 10 Unmodified _LIKVVKVPQK_ 0 0 0 ENSG00000127804|ENST00000263092|METTL16;nc|ENSG00000127804|Q86W50-2|METTL16;METTL16|p.R241Kfs*6|1|0.45|ENSG00000127804|chr17:2464214-2464215|-/T|frameshift_variant;METTL16|p.I349Ffs*5|1|0.13|ENSG00000127804|chr17:2420748-2420748|T/-|frameshift_variant ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3146362304688 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 75.546 1 75.546 75.046 76.046 0 0 0 0 0.22588 1 14674 14674 7.2892 0 1 26769 3491 17766 17772 26407 26407 0.21080593638657774 LIKVVKVPQK 10 Unmodified _LIKVVKVPQK_ 0 0 0 ENSG00000127804|ENST00000263092|METTL16;nc|ENSG00000127804|Q86W50-2|METTL16;METTL16|p.R241Kfs*6|1|0.45|ENSG00000127804|chr17:2464214-2464215|-/T|frameshift_variant;METTL16|p.I349Ffs*5|1|0.13|ENSG00000127804|chr17:2420748-2420748|T/-|frameshift_variant ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3185424804688 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 86.848 1 86.848 86.348 87.348 0 0 0 0 0.22588 1 16950 16950 7.2892 0 1 26770 3491 17766 17772 26408 26408 0.21080593638657774 LILAQECYI 9 Unmodified _LILAQECYI_ 0 0 0 REV__nc|ENSG00000188107|Q5T1H1|EYS REV__nc|ENSG00000188107|Q5T1H1|EYS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2864990234375 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 136.56 1 131.66 131.16 132.16 -4.8951 0 0 0 0.21848 1 26243 26243 18.135 3.2967 1 + 26771 24215 17767 17773 26409 26409 0.02792151511107477 LILCERRLLHL 11 Unmodified _LILCERRLLHL_ 0 0 0 REV__ENST00000554269.1_1_15:20362738-20365460:+|nuORF REV__ENST00000554269.1_1_15:20362738-20365460:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2386474609375 3 460.28323 1377.82786 NaN NaN NaN NaN NaN NaN NaN 178.95 1 174.08 173.58 174.58 -4.8686 0 0 0 0.22632 1 35631 35631 0.50596 0.50539 1 + 26772 22971 17768 17774 26410 26410 0.1540592456719878 LILDPNLDQQ 10 Unmodified _LILDPNLDQQ_ 0 0 0 REV__nc|ENSG00000101868|P09884|POLA1 REV__nc|ENSG00000101868|P09884|POLA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.2122497558594 3 390.211794 1167.61355 NaN NaN NaN NaN NaN NaN NaN 112.43 1 108.16 107.66 108.66 -4.2725 0 0 0 0.22588 1 21651 21651 6.1918 0.46 1 + 26773 14803 17769 17775 26411 26411 0.036450759522722365 LILDTRRAI 9 Unmodified _LILDTRRAI_ 0 0 0 ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1;ENST00000489985.1_1_1:46661446-46663526:-|nuORF;POMGNT1|p.V328Cfs*5|1|0.35|ENSG00000085998|chr1:46193608-46193608|C/-|frameshift_variant ENSG00000085998|ENST00000371984|POMGNT1 ENSG00000085998|ENST00000371984|POMGNT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5611267089844 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 85.128 1 85.128 84.628 85.628 0 0 0 0 0.23508 1 16612 16612 12.873 0.69786 1 26774 1687 17770 17776 26412 26412 0.12873400013927494 LILFATTLL 9 Unmodified _LILFATTLL_ 0 0 0 REV__ENSG00000109738|ENST00000264428|GLRB REV__ENSG00000109738|ENST00000264428|GLRB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 502.7430725097656 2 502.823161 1003.63177 NaN NaN NaN NaN NaN NaN NaN 118.95 1 114.44 113.94 114.94 -4.502 0 0 0 0.19636 1 23454 23454 2.4985 0 1 + 26775 15173 17771 17777 26413 26413 0.13009862664944194 LILFDHMVPL 10 Unmodified _LILFDHMVPL_ 0 0 0 ENST00000477298.1_1_7:6639605-6641772:+|nuORF;nc|ENSG00000146576|Q96N11-2|INTS15;ENSG00000146576|ENST00000344417|INTS15 ENST00000477298.1_1_7:6639605-6641772:+|nuORF ENST00000477298.1_1_7:6639605-6641772:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 400.1972961425781 3 399.89486 1196.66275 -2.1441 -0.00085743 2.6579 0.0010629 0.51371 0.00020543 399.89607124361794 15.071 0.14244 13.861 13.783 13.926 -1.2106 5 3 2 0 0 0 1.1335 1 2062 2062 1.9064 0 1 179300 26776 4661 17772 17778 26414 26414 0.07228692707531081 LILFKKAGLRA 11 Unmodified _LILFKKAGLRA_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 615.4100341796875 2 615.408258 1228.80196 NaN NaN NaN NaN NaN NaN NaN 176.1 1 171.22 170.72 171.72 -4.8739 0 0 0 0.22632 1 35023 35023 0.026206 0 1 + 26777 18305 17773 17779 26415 26415 0.19671398387208683 LILFMFRRLRQ 11 Unmodified _LILFMFRRLRQ_ 0 0 0 nc|ENSG00000130653|Q6ZV29-2|PNPLA7;PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant;nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7 nc|ENSG00000130653|Q6ZV29-2|PNPLA7 nc|ENSG00000130653|Q6ZV29-2|PNPLA7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 498.2573547363281 3 498.302624 1491.88604 NaN NaN NaN NaN NaN NaN NaN 148.66 1 143.95 143.45 144.45 -4.7095 0 0 0 0.22632 1 29521 29521 0.026206 0 1 26778 3623 17774 17780 26416 26416 0.1597760621245925 LILHLKLMKLL 11 Unmodified _LILHLKLMKLL_ 0 0 0 ENST00000575041.5_1_16:11864830-11868126:-|nuORF ENST00000575041.5_1_16:11864830-11868126:-|nuORF ENST00000575041.5_1_16:11864830-11868126:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 335.4878845214844 4 334.47936 1333.88834 -0.35827 -0.00011983 -0.76109 -0.00025457 -1.1194 -0.0003744 334.47893543619705 74.257 0.73071 70.892 70.505 71.235 -3.3643 72 20 4 0 0 0 0.66234 1 14487 14487 0.094841 0.094841 1 16551000 26779 11449 17775 17781 26417 26417 0.2347464189758739 LILHLKLMKLL 11 Unmodified _LILHLKLMKLL_ 0 0 0 ENST00000575041.5_1_16:11864830-11868126:-|nuORF ENST00000575041.5_1_16:11864830-11868126:-|nuORF ENST00000575041.5_1_16:11864830-11868126:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 334.47936 1333.88834 0.1768 5.9137E-05 -1.4654 -0.00049016 -1.2886 -0.00043102 334.47873798338964 74.536 0.6925 70.86 70.551 71.244 -3.6764 -0.058459 -0.0005715 NaN 0.094841 71 19 4 NaN NaN NaN NaN 0 NaN NaN 0 9402500 26780 11449 17775 17781 0.2347464189758739 LILHLKLMKLL 11 Unmodified _LILHLKLMKLL_ 0 0 0 ENST00000575041.5_1_16:11864830-11868126:-|nuORF ENST00000575041.5_1_16:11864830-11868126:-|nuORF ENST00000575041.5_1_16:11864830-11868126:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 334.47936 1333.88834 -0.34967 -0.00011696 -0.87692 -0.00029331 -1.2266 -0.00041027 334.478891301699 74.597 0.83188 71.003 70.641 71.473 -3.594 0.084401 0.00021588 NaN 0.094841 70 23 4 NaN NaN NaN NaN 0 NaN NaN 0 11636000 26781 11449 17775 17781 0.2347464189758739 LILIISYIF 9 Unmodified _LILIISYIF_ 0 0 0 ENSG00000184140|ENST00000328882|OR4F6 ENSG00000184140|ENST00000328882|OR4F6 ENSG00000184140|ENST00000328882|OR4F6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7818603515625 2 547.846636 1093.67872 NaN NaN NaN NaN NaN NaN NaN 138.12 1 133.28 132.78 133.78 -4.84 0 0 0 0.23508 1 26614 26614 7.9102 2.1783 1 26782 6890 17776 17782 26418 26418 0.13562722216079237 LILIRRLF 8 Unmodified _LILIRRLF_ 0 0 0 REV__AluSz_dup93949|chr19:17813592-17813897:-|3.833991762002796|0.3588066818941023|3.42|481.0|18|2|anti-sense REV__AluSz_dup93949|chr19:17813592-17813897:-|3.833991762002796|0.3588066818941023|3.42|481.0|18|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2711181640625 2 522.358037 1042.70152 NaN NaN NaN NaN NaN NaN NaN 135.19 1 135.19 134.69 135.69 0 0 0 0 0.21486 1 26774 26774 5.7604 0 1 + 26783 13031 17777 17783 26419 26419 0.18187786124212835 LILITKVAPIA 11 Unmodified _LILITKVAPIA_ 0 0 0 REV__ENSG00000111432|ENST00000229030|FZD10 REV__ENSG00000111432|ENST00000229030|FZD10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.337646484375 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 150.6 1 150.6 150.1 151.1 0 0 0 0 0.23698 1 30155 30155 1.4819 0.15237 1 26784 15245 17778 17784 26420 26420 0.19957771544500247 LILKIVITIFT 11 Unmodified _LILKIVITIFT_ 0 0 0 nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5 nc|ENSG00000171365|P51795-1|CLCN5 nc|ENSG00000171365|P51795-1|CLCN5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2515563964844 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 131.73 1 127.09 126.59 127.59 -4.6399 0 0 0 0.22632 1 25959 25959 0.026206 0 1 26785 6139 17779 17785 26421 26421 0.21658900267107128 LILKYIKKLE 10 Unmodified _LILKYIKKLE_ 0 0 0 tr|U7T051|U7T051_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00728PE=3SV=1 tr|U7T051|U7T051_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00728PE=3SV=1 tr|U7T051|U7T051_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00728PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7565307617188 2 630.918124 1259.8217 NaN NaN NaN NaN NaN NaN NaN 154.08 1 148.81 148.31 149.31 -5.2669 0 0 0 2.8426 1 29876 29876 0.0013812 0 1 26786 26309 17780 17786 26422 26422 0.20217729607338697 LILLFLKYFSW 11 Unmodified _LILLFLKYFSW_ 0 0 0 REV__ENSG00000204977|ENST00000378182|TRIM13 REV__ENSG00000204977|ENST00000378182|TRIM13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2318420410156 3 481.619725 1441.83735 NaN NaN NaN NaN NaN NaN NaN 29.879 1 29.879 29.379 30.379 0 0 0 0 0.23689 1 5355 5355 2.8433 1.3882 1 + 26787 19576 17781 17787 26423 26423 0.134100161243623 LILNHNVV 8 Unmodified _LILNHNVV_ 0 0 0 ENSG00000099999|ENST00000382363|RNF215 ENSG00000099999|ENST00000382363|RNF215 ENSG00000099999|ENST00000382363|RNF215 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5345764160156 2 461.279452 920.544351 0.032805 1.5132E-05 0.39116 0.00018043 0.42396 0.00019556 461.2794932363123 41.759 0.44876 39.153 38.911 39.36 -2.606 30 12 3 0 0 0 0.89225 1 7480 7480 6.2058 0 1 1617900 26788 1917 17782 17788 26424 26424 0.08090081514046688 LILNLILKPG 10 Unmodified _LILNLILKPG_ 0 0 0 TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.E934K|1|0.09|ENSG00000075568|chr2:97797435-97797435|C/T|missense_variant TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7725219726562 2 547.37081 1092.72707 0.20601 0.00011277 3.5032 0.0019176 3.7092 0.0020303 547.8737121583214 136.56 0.10336 131.92 131.85 131.95 -4.6399 4 2 2 0 0 0 0.91149 1 26946 26946 1.8442 0 1 809720 26789 1519 17783 17789 26425 26425 0.18441215855978044 LILPLLAGP 9 Unmodified _LILPLLAGP_ 0 0 0 REV__ENST00000466110.5_1_2:74592577-74593714:-|nuORF REV__ENST00000466110.5_1_2:74592577-74593714:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7594299316406 2 453.804771 905.59499 NaN NaN NaN NaN NaN NaN NaN 60.263 1 56.949 56.449 57.449 -3.3139 0 0 0 0.19634 1 11221 11221 0.40827 0 1 + 26790 21963 17784 17790 26426 26426 0.13841610839051555 LILQQCFLCV 10 Unmodified _LILQQCFLCV_ 0 0 0 ENST00000605849.1_1_4:96470971-96471193:+|nuORF ENST00000605849.1_1_4:96470971-96471193:+|nuORF ENST00000605849.1_1_4:96470971-96471193:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2512817382812 2 590.316863 1178.61917 NaN NaN NaN NaN NaN NaN NaN 158.2 1 153.4 152.9 153.9 -4.7952 0 0 0 0.22588 1 31456 31456 7.9102 0.62092 1 26791 11738 17785 17791 26427 26427 0.037007599387607115 LILSCCLHY 9 Unmodified _LILSCCLHY_ 0 0 0 ENST00000573153.5_1_17:1964788-1969297:-|nuORF;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6;ENSG00000070366|ENST00000263073|SMG6 ENST00000573153.5_1_17:1964788-1969297:-|nuORF ENST00000573153.5_1_17:1964788-1969297:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2718505859375 2 532.767006 1063.51946 0.45309 0.00024139 3.6055 0.0019209 4.0585 0.0021623 532.7675207605467 136.12 0.20239 131.23 131.11 131.31 -4.8951 8 5 2 0 0 0 0.59384 1 26168 26168 13.508 1.8676 1 1212000 26792 1429 17786 17792 26428 26428 -0.009760576751887129 LILVAVFKY 9 Unmodified _LILVAVFKY_ 0 0 0 ENSG00000163964|ENST00000392391|PIGX;nc|ENSG00000163964|Q8TBF5-2|PIGX ENSG00000163964|ENST00000392391|PIGX ENSG00000163964|ENST00000392391|PIGX MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2720336914062 2 533.338978 1064.6634 NaN NaN NaN NaN NaN NaN NaN 134.17 1 129.35 128.85 129.85 -4.8175 0 0 0 0.23508 1 25830 25830 5.2307 0 1 26793 5491 17787 17793 26429 26429 0.133658554188969 LILWHPYARHY 11 Unmodified _LILWHPYARHY_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2645568847656 3 490.266456 1467.77754 NaN NaN NaN NaN NaN NaN NaN 51.856 1 48.811 48.311 49.311 -3.0453 0 0 0 0.22632 1 9530 9530 1.4074 1.1088 1 26794 4041 17788 17794 26430 26430 0.06236138233680322 LIMDTMSFL 9 Unmodified _LIMDTMSFL_ 0 0 0 REV__ENST00000471238.5_1_7:75583310-75608939:+|nuORF REV__ENST00000471238.5_1_7:75583310-75608939:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5530700683594 3 357.51354 1069.51879 -0.33332 -0.00011917 0.76625 0.00027394 0.43293 0.00015478 357.5137841266444 54.788 1.163 54.788 54.172 55.335 0 46 32 2 0 0 0 0.58073 1 10349 10349 0.37959 0.35031 1 3159600 + 26795 15905 17789 17795 26431 26431 -0.01318897114902029 LIMDTMSFL 9 Unmodified _LIMDTMSFL_ 0 0 0 REV__ENST00000471238.5_1_7:75583310-75608939:+|nuORF REV__ENST00000471238.5_1_7:75583310-75608939:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.51354 1069.51879 -0.38488 -0.0001376 0.96986 0.00034674 0.58498 0.00020914 357.5138431589215 57.405 0.13982 54.51 54.413 54.553 -2.8944 -0.13907 0.00016777 NaN 0.12781 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 265380 + 26796 15905 17789 17795 -0.01318897114902029 LIMFDTHPV 9 Unmodified _LIMFDTHPV_ 0 0 0 REV__ENST00000573126.1_1_17:5329517-5329772:+|nuORF REV__ENST00000573126.1_1_17:5329517-5329772:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.1800537109375 3 358.188044 1071.5423 -0.17327 -6.2063E-05 -0.88793 -0.00031805 -1.0612 -0.00038011 358.18850387361766 37.559 0.24255 37.559 37.508 37.751 0 11 6 2 0 0 0 0.24122 1 6966 6966 0.40827 0.395 1 810700 + 26797 23182 17790 17796 26432 26432 0.00939284713899724 LIMGKEALQIK 11 Unmodified _LIMGKEALQIK_ 0 0 0 CON__Q1A7A4;ENSG00000106804|ENST00000223642|C5 CON__Q1A7A4;ENSG00000106804|ENST00000223642|C5 CON__Q1A7A4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2079772949219 3 415.252936 1242.73698 NaN NaN NaN NaN NaN NaN NaN 87.59 1 83.594 83.094 84.094 -3.9953 0 0 0 0.23264 1 16682 16682 2.8433 0 1 + 26798 683;2406 17791 17797 26433 26433 0.12532035799040386 LIMNQKRTEQ 10 Unmodified _LIMNQKRTEQ_ 0 0 0 REV__MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant REV__MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7488403320312 2 630.840079 1259.66561 NaN NaN NaN NaN NaN NaN NaN 75.728 1 72.005 71.505 72.505 -3.7227 0 0 0 0.22588 1 14328 14328 6.7232 0.51738 1 + 26799 17176 17792 17798 26434 26434 0.046159160943716415 LIMRKIWPR 9 Unmodified _LIMRKIWPR_ 0 0 0 REV__APMAP|p.F346Lfs*9|1|0.19|ENSG00000101474|chr20:24968895-24968895|A/-|frameshift_variant REV__APMAP|p.F346Lfs*9|1|0.19|ENSG00000101474|chr20:24968895-24968895|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3110046386719 3 404.918111 1211.7325 -0.84057 -0.00034036 0.68175 0.00027605 -0.15882 -6.4311E-05 404.9183586294184 12.097 0.17797 11.087 10.961 11.139 -1.0098 7 4 3 0 0 0 0.88425 1 1628 1628 0.96228 0 1 4613200 + 26800 13083 17793 17799 26435 26435 0.1351061616678635 LIMRKIWPR 9 Unmodified _LIMRKIWPR_ 0 0 0 REV__APMAP|p.F346Lfs*9|1|0.19|ENSG00000101474|chr20:24968895-24968895|A/-|frameshift_variant REV__APMAP|p.F346Lfs*9|1|0.19|ENSG00000101474|chr20:24968895-24968895|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 404.918111 1211.7325 -0.69064 -0.00027965 0.55374 0.00022422 -0.1369 -5.5433E-05 404.918343702279 12.052 0.13965 10.922 10.869 11.009 -1.1293 -0.082474 -9.8765E-05 NaN 0.96228 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2875500 + 26801 13083 17793 17799 0.1351061616678635 LINNSIAE 8 Unmodified _LINNSIAE_ 0 0 0 ENST00000497003.5_1_2:178552959-178791632:-|nuORF;nc|ENSG00000128655|Q9HCR9-4|PDE11A;nc|ENSG00000128655|Q9HCR9-3|PDE11A;nc|ENSG00000128655|Q9HCR9-2|PDE11A;ENSG00000128655|ENST00000286063|PDE11A ENST00000497003.5_1_2:178552959-178791632:-|nuORF ENST00000497003.5_1_2:178552959-178791632:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2359924316406 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 64.524 1 64.524 64.024 65.024 0 0 0 0 0.21486 1 12422 12422 12.532 3.9383 1 26802 3537 17794 17800 26436 26436 0.019015056264720442 LINPNIATV 9 Unmodified _LINPNIATV_ 0 0 0 ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7416076660156 2 477.784567 953.554582 -0.10184 -4.8657E-05 0.36088 0.00017243 0.25905 0.00012377 477.78461798875986 115.92 0.69352 115.92 115.63 116.32 0 29 19 2 0 0 0 0.46541 1 22798 22798 21.747 2.4897 1 2361600 26803 1673 17795 17801 26437 26437 0.07594644448613508 LINPNIATV 9 Unmodified _LINPNIATV_ 0 0 0 ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7410888671875 2 477.784567 953.554582 0.26794 0.00012802 -0.36873 -0.00017617 -0.10079 -4.8154E-05 477.7843448640877 120.43 0.69629 115.91 115.54 116.24 -4.5221 41 19 3 0 0 0 0.46541 1 23753 23753 21.747 4.6338 1 4037200 26804 1673 17795 17801 26438 26438 0.07594644448613508 LINPNIATV 9 Unmodified _LINPNIATV_ 0 0 0 ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.784567 953.554582 0.61284 0.00029281 -0.48432 -0.0002314 0.12852 6.1404E-05 477.7842799195714 120.57 0.62315 115.92 115.66 116.28 -4.645 -0.0064612 -0.00022572 NaN 21.747 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4322200 26805 1673 17795 17801 0.07594644448613508 LINPNIATV 9 Unmodified _LINPNIATV_ 0 0 0 ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.784567 953.554582 0.37647 0.00017987 -0.2112 -0.00010091 0.16527 7.8961E-05 477.78439292858013 120.43 0.59679 115.96 115.68 116.28 -4.467 0.03375 3.5268E-05 NaN 21.747 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2997100 26806 1673 17795 17801 0.07594644448613508 LIPFPTLK 8 Unmodified _LIPFPTLK_ 0 0 0 ENST00000430246.6_1_14:21730999-21731299:-|nuORF ENST00000430246.6_1_14:21730999-21731299:-|nuORF ENST00000430246.6_1_14:21730999-21731299:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2375793457031 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 97.07 1 92.972 92.472 93.472 -4.0978 0 0 0 0.21486 1 19045 19045 0.45834 0 1 26807 9769 17796 17802 26439 26439 0.1126532432199383 LIPFPTLK 8 Unmodified _LIPFPTLK_ 0 0 0 ENST00000430246.6_1_14:21730999-21731299:-|nuORF ENST00000430246.6_1_14:21730999-21731299:-|nuORF ENST00000430246.6_1_14:21730999-21731299:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.165283203125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 118.24 1 113.74 113.24 114.24 -4.502 0 0 0 0.21486 1 23310 23310 0.45834 0 1 26808 9769 17796 17802 26440 26440 0.1126532432199383 LIPFPTLK 8 Unmodified _LIPFPTLK_ 0 0 0 ENST00000430246.6_1_14:21730999-21731299:-|nuORF ENST00000430246.6_1_14:21730999-21731299:-|nuORF ENST00000430246.6_1_14:21730999-21731299:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2372131347656 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 96.58 1 92.345 91.845 92.845 -4.2348 0 0 0 0.21486 1 18441 18441 0.45834 0 1 26809 9769 17796 17802 26441 26441 0.1126532432199383 LIPFPTLK 8 Unmodified _LIPFPTLK_ 0 0 0 ENST00000430246.6_1_14:21730999-21731299:-|nuORF ENST00000430246.6_1_14:21730999-21731299:-|nuORF ENST00000430246.6_1_14:21730999-21731299:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.22259521484375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 98.191 1 93.922 93.422 94.422 -4.2692 0 0 0 0.21486 1 18765 18765 0.45834 0 1 26810 9769 17796 17802 26442 26442 0.1126532432199383 LIPITTCFTG 10 Unmodified _LIPITTCFTG_ 0 0 0 ENST00000371936.5_1_X:114245326-114248359:-|nuORF ENST00000371936.5_1_X:114245326-114248359:-|nuORF ENST00000371936.5_1_X:114245326-114248359:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2835693359375 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 116.07 1 116.07 115.57 116.57 0 0 0 0 0.22569 1 22853 22853 15.847 0.078963 1 26811 9168 17797 17803 26443 26443 0.027921515110847395 LIPKRKGYL 9 Unmodified _LIPKRKGYL_ 0 0 0 REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7948608398438 2 544.352951 1086.69135 0.47959 0.00026106 4.3209 0.0023521 4.8004 0.0026131 544.3568993683723 154.93 0.10889 149.68 149.61 149.72 -5.2526 4 2 2 0 0 0 0.80737 1 30043 30043 14.582 5.9884 1 670650 + 26812 25559 17798 17804 26444 26444 0.15147178398979122 LIPLPRLLF 9 Unmodified _LIPLPRLLF_ 0 0 0 REV__ENST00000460723.5_1_22:32017538-32058194:-|nuORF REV__ENST00000460723.5_1_22:32017538-32058194:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2728881835938 2 541.360245 1080.70594 0.40671 0.00022018 2.3069 0.0012489 2.7136 0.001469 541.8611328749624 146.81 0.14398 141.81 141.71 141.86 -5 5 3 2 0 0 0 0.64208 1 28419 28419 1.2148 1.2115 1 1459000 + 26813 19788 17799 17805 26445 26445 0.1688125054711236 LIPLVALAP 9 Unmodified _LIPLVALAP_ 0 0 0 REV__tr|U7SVI5|U7SVI5_FUSNUMalatepermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01239PE=3SV=1 REV__tr|U7SVI5|U7SVI5_FUSNUMalatepermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01239PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.753662109375 2 453.804771 905.59499 NaN NaN NaN NaN NaN NaN NaN 114.11 1 109.63 109.13 110.13 -4.4726 0 0 0 0.19624 1 22484 22484 0.40827 0.335 1 + 26814 25192 17800 17806 26446 26446 0.13841610839017449 LIPLVGNVQL 10 Unmodified _LIPLVGNVQL_ 0 0 0 REV__ENST00000585105.5_1_17:73482215-73489290:+|nuORF REV__ENST00000585105.5_1_17:73482215-73489290:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2740478515625 2 533.336967 1064.65938 NaN NaN NaN NaN NaN NaN NaN 136.1 1 131.26 130.76 131.76 -4.8307 0 0 0 0.22588 1 26203 26203 6.7232 0 1 + 26815 18576 17801 17807 26447 26447 0.1296376592517845 LIPTKENN 8 Unmodified _LIPTKENN_ 0 0 0 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2394104003906 2 464.758549 927.502546 0.13835 6.4298E-05 1.3476 0.00062629 1.4859 0.00069059 464.759173806404 131.86 0.93596 131.86 131.5 132.44 0 41 26 2 0 0 0 0.52597 1 26078 26078 26.884 26.884 1 2061700 26816 4902 17802 17808 26448 26448 0.03589481034839537 LIPTKENN 8 Unmodified _LIPTKENN_ 0 0 0 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.23944091796875 2 464.758549 927.502546 0.23436 0.00010892 1.3598 0.00063198 1.5942 0.0007409 464.7591786420174 136.83 1.0793 131.99 131.62 132.7 -4.84 44 30 2 0 0 0 0.52597 1 26331 26331 26.884 26.884 1 2762900 26817 4902 17802 17808 26449 26449 0.03589481034839537 LIPTMRKG 8 Unmodified _LIPTMRKG_ 0 0 0 REV__tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1 REV__tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23883056640625 2 458.275855 914.537157 NaN NaN NaN NaN NaN NaN NaN 103.32 1 98.978 98.478 99.478 -4.346 0 0 0 0.21292 1 19788 19788 14.838 0.25658 1 + 26818 25442 17803 17809 26450 26450 0.07647025641961136 LIPWRIHSQ 9 Unmodified _LIPWRIHSQ_ 0 0 0 ENST00000368346.7_1_1:155447876-155447927:-|nuORF ENST00000368346.7_1_1:155447876-155447927:-|nuORF ENST00000368346.7_1_1:155447876-155447927:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3193359375 2 575.330008 1148.64546 -0.019477 -1.1206E-05 0.042432 2.4413E-05 0.022955 1.3207E-05 575.3299599353832 133.88 1.2318 129.24 128.79 130.02 -4.6399 75 34 3 0 0 0 0.65387 1 26453 26453 9.3831 2.2814 1 9329700 26819 9096 17804 17810 26451 26451 0.07708533216737123 LIPWRIHSQ 9 Unmodified _LIPWRIHSQ_ 0 0 0 ENST00000368346.7_1_1:155447876-155447927:-|nuORF ENST00000368346.7_1_1:155447876-155447927:-|nuORF ENST00000368346.7_1_1:155447876-155447927:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3350830078125 2 575.330008 1148.64546 0.21659 0.00012461 -0.012998 -7.4783E-06 0.20359 0.00011713 575.3299269389493 134.02 1.0561 129.2 128.77 129.83 -4.8175 74 29 3 0 0 0 0.6329 1 25774 25774 10.824 0 1 8467000 26820 9096 17804 17810 26452 26452 0.07708533216737123 LIQAFSHMFG 10 Unmodified _LIQAFSHMFG_ 0 0 0 REV__ENSG00000172208|ENST00000624868|OR4X2 REV__ENSG00000172208|ENST00000624868|OR4X2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.326171875 2 575.789327 1149.5641 0.13256 7.6327E-05 2.7166 0.0015642 2.8492 0.0016405 576.2924326793999 131.03 0.17526 126.19 126.06 126.24 -4.8355 5 4 2 0 0 0 0.89521 1 25166 25166 1.4819 0 1 2877400 + 26821 18276 17805 17811 26453 26453 -0.0046991053750389256 LIQDQPDQ 8 Unmodified _LIQDQPDQ_ 0 0 0 ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENSG00000069329|ENST00000299138|VPS35 ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENST00000568784.6_1_16:46694386-46722246:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.736083984375 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 46.898 1 44.057 43.557 44.557 -2.8409 0 0 0 0.23107 1 8849 8849 0.68139 0.054566 1 26822 1416 17806 17812 26454 26454 -0.018436997244748454 LIQEHGKLQ 9 Unmodified _LIQEHGKLQ_ 0 0 0 REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.266845703125 2 533.306198 1064.59784 NaN NaN NaN NaN NaN NaN NaN 63.824 1 63.824 63.324 64.324 0 0 0 0 0.23508 1 12279 12279 10.824 1.4765 1 + 26823 17267 17807 17813 26455 26455 0.06812834225888764 LIQHQKSHKN 10 Unmodified _LIQHQKSHKN_ 0 0 0 nc|ENSG00000102974|P49711-2|CTCF;CTCF|p.E691Sfs*30|1|0.45|ENSG00000102974|chr16:67637752-67637752|A/-|frameshift_variant;ENSG00000102974|ENST00000264010|CTCF nc|ENSG00000102974|P49711-2|CTCF nc|ENSG00000102974|P49711-2|CTCF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 617.8357543945312 2 616.846553 1231.67855 0.40522 0.00024996 0.32321 0.00019937 0.72842 0.00044933 616.8468102754614 161.35 0.90378 161.35 160.99 161.9 0 54 25 3 0 0 0 0.71097 1 32393 32393 10.074 3.3508 1 12648000 26824 739 17808 17814 26456 26456 0.0719811526880676 LIQMFHYI 8 Unmodified _LIQMFHYI_ 0 0 0 ENSG00000108381|ENST00000263080|ASPA ENSG00000108381|ENST00000263080|ASPA ENSG00000108381|ENST00000263080|ASPA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2850341796875 2 532.783513 1063.55247 0.037064 1.9747E-05 -0.20718 -0.00011038 -0.17011 -9.0634E-05 532.7833964760473 67.126 0.35136 64.018 63.791 64.142 -3.1086 16 9 2 0 0 0 0.16788 1 13041 13041 49.669 7.8293 1 1021900 26825 2469 17809 17815 26457 26457 0.023238924391534965 LIRGKTEDF 9 Unmodified _LIRGKTEDF_ 0 0 0 REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 90.53 1 90.53 90.03 91.03 0 0 0 0 0.23508 1 17685 17685 12.241 5.5175 1 + 26826 21605 17810 17816 26458 26458 0.046171279889904326 LIRGKTEDF 9 Unmodified _LIRGKTEDF_ 0 0 0 REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20196533203125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 90.862 1 90.862 90.362 91.362 0 0 0 0 0.23508 1 17755 17755 12.241 5.5175 1 + 26827 21605 17810 17816 26459 26459 0.046171279889904326 LIRGKTEDF 9 Unmodified _LIRGKTEDF_ 0 0 0 REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20098876953125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 93.867 1 89.876 89.376 90.376 -3.9907 0 0 0 0.23508 1 18388 18388 8.1555 1.4324 1 + 26828 21605 17810 17816 26460 26460 0.046171279889904326 LIRGKTEDF 9 Unmodified _LIRGKTEDF_ 0 0 0 REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20208740234375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 94.096 1 90.105 89.605 90.605 -3.9907 0 0 0 0.23508 1 18432 18432 8.1555 0.54658 1 + 26829 21605 17810 17816 26461 26461 0.046171279889904326 LIRGKTEDF 9 Unmodified _LIRGKTEDF_ 0 0 0 REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 94.043 1 89.9 89.4 90.4 -4.1435 0 0 0 0.23508 1 17933 17933 8.1555 1.4324 1 + 26830 21605 17810 17816 26462 26462 0.046171279889904326 LIRGKTEDF 9 Unmodified _LIRGKTEDF_ 0 0 0 REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2019348144531 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 94.051 1 90.207 89.707 90.707 -3.844 0 0 0 0.23508 1 18037 18037 8.1555 1.4324 1 + 26831 21605 17810 17816 26463 26463 0.046171279889904326 LIRITKKRL 9 Unmodified _LIRITKKRL_ 0 0 0 REV__TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant REV__TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 570.9036865234375 2 570.9006 1139.78665 NaN NaN NaN NaN NaN NaN NaN 162.02 1 156.83 156.33 157.33 -5.1878 0 0 0 0.19634 1 31451 31451 0.073264 0.029476 1 + 26832 25495 17811 17817 26464 26464 0.2223453159001565 LIRIYYWYWRR 11 Unmodified _LIRIYYWYWRR_ 0 0 0 ENSG00000163686|ENST00000478253|ABHD6 ENSG00000163686|ENST00000478253|ABHD6 ENSG00000163686|ENST00000478253|ABHD6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 562.8245849609375 3 563.312177 1686.9147 0.2889 0.00016274 3.2292 0.0018191 3.5181 0.0019818 563.3130115697381 143.37 0.27715 143.37 143.14 143.41 0 9 7 2 0 0 0 0.89122 1 28563 28563 0.00056442 0 1 3843100 26833 5452 17812 17818 26465 26465 0.0987204711323102 LIRKRHKALHY 11 Unmodified _LIRKRHKALHY_ 0 0 0 REV__ENSG00000179761|ENST00000323372|PIPOX REV__ENSG00000179761|ENST00000323372|PIPOX MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7265930175781 3 478.965 1433.87317 NaN NaN NaN NaN NaN NaN NaN 68.405 1 64.869 64.369 65.369 -3.5362 0 0 0 0.22632 1 12854 12854 0.026206 0.025642 1 + 26834 18665 17813 17819 26466 26466 0.17358911144583544 LIRLKSSY 8 Unmodified _LIRLKSSY_ 0 0 0 REV__ENST00000304992.10_1_17:1584054-1584108:-|nuORF REV__ENST00000304992.10_1_17:1584054-1584108:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.259033203125 2 490.300384 978.586216 NaN NaN NaN NaN NaN NaN NaN 92.545 1 92.545 92.045 93.045 0 0 0 0 0.21486 1 18095 18095 6.3541 0 1 + 26835 20430 17814 17820 26467 26467 0.09606637202557522 LIRPEMGF 8 Unmodified _LIRPEMGF_ 0 0 0 REV__ENSG00000142871|ENST00000451137|CCN1 REV__ENSG00000142871|ENST00000451137|CCN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2436828613281 2 481.760038 961.505523 0.31828 0.00015334 1.6779 0.00080833 1.9962 0.00096167 481.76070141025156 31.692 0.56673 29.666 29.302 29.869 -2.0264 22 15 2 0 0 0 0.74718 1 5478 5478 24.674 0 1 768420 + 26836 16692 17815 17821 26468 26468 0.023230328880231355 LIRPQSVTE 9 Unmodified _LIRPQSVTE_ 0 0 0 REV__ENST00000521031.1_1_5:153414374-153414452:-|nuORF REV__ENST00000521031.1_1_5:153414374-153414452:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 348.1962585449219 3 348.201229 1041.58186 NaN NaN NaN NaN NaN NaN NaN 114.3 1 114.3 113.8 114.8 0 0 0 0 0.23508 1 22484 22484 5.2969 0 1 + 26837 22641 17816 17822 26469 26469 0.06273127989015848 LIRQHHFVTQD 11 Unmodified _LIRQHHFVTQD_ 0 0 0 REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1 REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2493896484375 3 465.249354 1392.72623 NaN NaN NaN NaN NaN NaN NaN 120.6 1 120.6 120.1 121.1 0 0 0 0 0.22632 1 23771 23771 1.4551 0 1 + 26838 24671 17817 17823 26470 26470 0.04557769468965489 LIRRPDLRYQL 11 Unmodified _LIRRPDLRYQL_ 0 0 0 nc|ENSG00000107282|Q02410-2|APBA1;ENSG00000107282|ENST00000265381|APBA1 nc|ENSG00000107282|Q02410-2|APBA1 nc|ENSG00000107282|Q02410-2|APBA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25384521484375 3 481.624532 1441.85177 NaN NaN NaN NaN NaN NaN NaN 119.15 1 119.15 118.65 119.65 0 0 0 0 0.2366 1 23474 23474 3.0723 1.6171 1 26839 2418 17818 17824 26471 26471 0.1485148132521772 LIRTQPCCRPW 11 Unmodified _LIRTQPCCRPW_ 0 0 0 REV__ENST00000462059.1_1_8:144660029-144660488:-|nuORF REV__ENST00000462059.1_1_8:144660029-144660488:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23187255859375 3 458.237403 1371.69038 NaN NaN NaN NaN NaN NaN NaN 70.465 1 66.885 66.385 67.385 -3.5798 0 0 0 0.22632 1 13282 13282 0.11104 0 1 + 26840 21898 17819 17825 26472 26472 0.01940272696106149 LISEHYVG 8 Unmodified _LISEHYVG_ 0 0 0 ENSG00000141098|ENST00000268797|GFOD2;nc|ENSG00000141098|Q3B7J2-2|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF ENSG00000141098|ENST00000268797|GFOD2 ENSG00000141098|ENST00000268797|GFOD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.242919921875 2 459.239993 916.465432 -0.078113 -3.5873E-05 0.069587 3.1957E-05 -0.0085263 -3.9156E-06 459.23996413987317 49.711 1.2417 46.704 46.035 47.277 -3.0068 108 35 4 0 0 0 0.72861 1 9170 9170 10.183 0.83596 1 29745000 26841 4348 17820 17826 26473 26473 0.0038580948910293955 LISFLTLN 8 Unmodified _LISFLTLN_ 0 0 0 REV__ENSG00000169903|ENST00000305354|TM4SF4 REV__ENSG00000169903|ENST00000305354|TM4SF4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2385559082031 2 460.776211 919.537869 0.12828 5.9108E-05 0.2619 0.00012068 0.39018 0.00017979 460.77615428858365 26.921 0.20618 25.286 25.143 25.349 -1.6347 7 5 2 0 0 0 1.0231 1 4488 4488 7.9102 5.6074 1 727150 + 26842 18127 17821 17827 26474 26474 0.07488143562659388 LISKEEKI 8 Unmodified _LISKEEKI_ 0 0 0 REV__ENSG00000100599|ENST00000216487|RIN3 REV__ENSG00000100599|ENST00000216487|RIN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7746276855469 2 480.292225 958.569897 0.19149 9.1972E-05 -0.24111 -0.0001158 -0.049617 -2.383E-05 480.29222751031415 99.075 1.9725 99.075 98.613 100.59 0 176 56 5 0 0 0 0.73936 1 19352 19352 8.5933 0 1 685310000 26843 14724 17822 17828 26475 26475 0.08895511245816579 LISLVKRLFR 10 Unmodified _LISLVKRLFR_ 0 0 0 REV__ENSG00000146909|ENST00000275820|NOM1 REV__ENSG00000146909|ENST00000275820|NOM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7741088867188 2 622.913707 1243.81286 NaN NaN NaN NaN NaN NaN NaN 123.46 1 118.87 118.37 119.37 -4.5926 0 0 0 0.22588 1 23769 23769 3.5965 0 1 + 26844 16910 17823 17829 26476 26476 0.20070800761482133 LISMWVADM 9 Unmodified _LISMWVADM_ 0 0 0 tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1 tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1 tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2713012695312 2 533.259013 1064.50347 NaN NaN NaN NaN NaN NaN NaN 105.96 1 105.96 105.46 106.46 0 0 0 0 0.23508 1 20827 20827 12.532 0 1 26845 26262 17824 17830 26477 26477 -0.02619763912093731 LISNVQPPTLY 11 Unmodified _LISNVQPPTLY_ 0 0 0 REV__nc|ENSG00000164951|Q9P0J1-2|PDP1 REV__nc|ENSG00000164951|Q9P0J1-2|PDP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7772827148438 2 622.847896 1243.68124 NaN NaN NaN NaN NaN NaN NaN 86.775 1 82.825 82.325 83.325 -3.9503 0 0 0 0.23264 1 16522 16522 6.2058 0 1 + 26846 17728 17825 17831 26478 26478 0.06914525883098577 LISQLRALE 9 Unmodified _LISQLRALE_ 0 0 0 ENSG00000206113|ENST00000635017|CFAP99 ENSG00000206113|ENST00000635017|CFAP99 ENSG00000206113|ENST00000635017|CFAP99 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2796630859375 2 521.816399 1041.61824 -0.3243 -0.00016923 0.71884 0.0003751 0.39454 0.00020588 521.8166457066142 113.98 0.48854 109.52 109.31 109.8 -4.4646 20 13 3 0 0 0 0.71913 1 22496 22496 15.248 0 1 1606500 26847 7666 17826 17832 26479 26479 0.09910004885728085 LISQRKSDP 9 Unmodified _LISQRKSDP_ 0 0 0 REV__ENSG00000186716|ENST00000305877|BCR REV__ENSG00000186716|ENST00000305877|BCR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2687377929688 2 522.29583 1042.57711 NaN NaN NaN NaN NaN NaN NaN 124.93 1 120.28 119.78 120.78 -4.6495 0 0 0 0.19679 1 24038 24038 0.073264 0 1 + 26848 19049 17827 17833 26480 26480 0.057522438462456194 LISRKTLD 8 Unmodified _LISRKTLD_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 473.2900085449219 2 473.290017 944.565481 NaN NaN NaN NaN NaN NaN NaN 160.7 1 155.9 155.4 156.4 -4.7952 0 0 0 0.22834 1 31960 31960 0.12286 0 1 26849 7957 17828 17834 26481 26481 0.09098046822896322 LITGATSG 8 Unmodified _LITGATSG_ 0 0 0 tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1 tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1 tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013244628906 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 93.57 1 89.58 89.08 90.08 -3.9907 0 0 0 0.21486 1 18329 18329 10.183 0 1 26850 26228 17829 17835 26482 26482 0.01566162534970772 LITGATSG 8 Unmodified _LITGATSG_ 0 0 0 tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1 tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1 tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.1999206542969 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 94.827 1 90.778 90.278 91.278 -4.0496 0 0 0 0.21486 1 18585 18585 5.7604 0 1 26851 26228 17829 17835 26483 26483 0.01566162534970772 LITGATSG 8 Unmodified _LITGATSG_ 0 0 0 tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1 tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1 tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20159912109375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 95.946 1 91.754 91.254 92.254 -4.1911 0 0 0 0.21486 1 18315 18315 10.183 0 1 26852 26228 17829 17835 26484 26484 0.01566162534970772 LITGSLLDGVV 11 Unmodified _LITGSLLDGVV_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.789794921875 2 543.823889 1085.63323 0.42789 0.00023269 3.8131 0.0020737 4.241 0.0023064 544.3286550677 164.64 0.17429 159.85 159.75 159.92 -4.7898 7 4 2 0 0 0 0.69278 1 32908 32908 12.241 0.60036 1 4776000 + 26853 18377 17830 17836 26485 26485 0.09383451963026346 LITILTSPMY 10 Unmodified _LITILTSPMY_ 0 0 0 REV__ENSG00000163288|ENST00000295454|GABRB1 REV__ENSG00000163288|ENST00000295454|GABRB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32177734375 2 576.322668 1150.63078 NaN NaN NaN NaN NaN NaN NaN 110.1 1 105.72 105.22 106.22 -4.3776 0 0 0 0.22588 1 21698 21698 7.9102 0.62092 1 + 26854 17556 17831 17837 26486 26486 0.06149280233717036 LITQRHREA 9 Unmodified _LITQRHREA_ 0 0 0 REV__GFRA2|p.R233H|1|0.57|ENSG00000168546|chr8:21750684-21750684|C/T|missense_variant REV__GFRA2|p.R233H|1|0.57|ENSG00000168546|chr8:21750684-21750684|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21612548828125 3 375.215873 1122.62579 NaN NaN NaN NaN NaN NaN NaN 114.34 1 109.78 109.28 110.28 -4.555 0 0 0 0.19636 1 21954 21954 0.073264 0 1 + 26855 23570 17832 17838 26487 26487 0.06938157206013784 LITSIIYTY 9 Unmodified _LITSIIYTY_ 0 0 0 REV__ENSG00000179468|ENST00000350513|OR9A2 REV__ENSG00000179468|ENST00000350513|OR9A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.775146484375 2 543.807708 1085.60086 0.22567 0.00012272 1.2212 0.00066409 1.4469 0.00078681 543.808303356675 115.35 0.7881 110.88 110.43 111.22 -4.4726 35 22 2 0 0 0 0.5464 1 22781 22781 1.2148 0.80657 1 2517800 + 26856 18658 17833 17839 26488 26488 0.06148664560055295 LITSIIYTY 9 Unmodified _LITSIIYTY_ 0 0 0 REV__ENSG00000179468|ENST00000350513|OR9A2 REV__ENSG00000179468|ENST00000350513|OR9A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.774169921875 2 543.807708 1085.60086 0.22123 0.00012031 1.6133 0.00087732 1.8345 0.00099763 543.8085587086148 115.19 0.96236 110.64 110.08 111.04 -4.555 40 26 2 0 0 0 0.54354 1 22134 22134 16.942 1.0951 1 2107300 + 26857 18658 17833 17839 26489 26489 0.06148664560055295 LITSIIYTY 9 Unmodified _LITSIIYTY_ 0 0 0 REV__ENSG00000179468|ENST00000350513|OR9A2 REV__ENSG00000179468|ENST00000350513|OR9A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77392578125 2 543.807708 1085.60086 0.61358 0.00033367 1.2489 0.00067917 1.8625 0.0010128 543.8081457646488 114.97 0.8457 110.66 110.13 110.98 -4.3135 46 23 3 0 0 0 0.54354 1 22124 22124 16.942 1.0951 1 2517800 + 26858 18658 17833 17839 26490 26490 0.06148664560055295 LITTIIYSY 9 Unmodified _LITTIIYSY_ 0 0 0 REV__OR6C70|p.K221T|1|0.32|ENSG00000184954|chr12:55469477-55469477|T/G|missense_variant REV__OR6C70|p.K221T|1|0.32|ENSG00000184954|chr12:55469477-55469477|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7927856445312 2 543.807708 1085.60086 NaN NaN NaN NaN NaN NaN NaN 103.67 1 99.326 98.826 99.826 -4.346 0 0 0 0.23411 1 19858 19858 13.508 0.97634 1 + 26859 24415 17834 17840 26491 26491 0.06148664560032557 LIVDSATALY 10 Unmodified _LIVDSATALY_ 0 0 0 nc|ENSG00000051180|Q06609-2|RAD51;nc|ENSG00000051180|Q06609-3|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51 nc|ENSG00000051180|Q06609-2|RAD51 nc|ENSG00000051180|Q06609-2|RAD51 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2864379882812 2 533.294965 1064.57538 -0.27121 -0.00014464 1.7936 0.00095651 1.5224 0.00081188 533.7975881426647 106.34 0.24226 102.08 101.87 102.11 -4.2638 10 6 2 0 0 0 0.42209 1 20936 20936 26.884 1.4843 1 839780 26860 1247 17835 17841 26492 26492 0.04567190037596447 LIVHVRIHT 9 Unmodified _LIVHVRIHT_ 0 0 0 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.769775390625 2 544.340375 1086.6662 0.37493 0.00020409 -1.7668 -0.00096175 -1.3919 -0.00075766 544.3395619938415 24.547 0.30952 24.547 24.371 24.681 0 11 8 2 0 0 0 0.81703 1 4224 4224 10.074 0 1 507610 26861 7921 17836 17842 26493 26493 0.12633123596401674 LIVHVRIHT 9 Unmodified _LIVHVRIHT_ 0 0 0 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7703247070312 2 544.340375 1086.6662 0.090742 4.9395E-05 -1.4236 -0.00077494 -1.3329 -0.00072555 544.3396201084287 26.37 0.51677 24.448 24.159 24.675 -1.9222 19 14 2 0 0 0 0.84208 1 4370 4370 7.2892 0 1 352300 26862 7921 17836 17842 26494 26494 0.12633123596401674 LIVSLVIILVY 11 Unmodified _LIVSLVIILVY_ 0 0 0 tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1 tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1 tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7797241210938 2 622.91505 1243.81555 NaN NaN NaN NaN NaN NaN NaN 74.057 1 74.057 73.557 74.557 0 0 0 0 0.23264 1 14372 14372 6.2058 1.8765 1 26863 26149 17837 17843 26495 26495 0.2033921137579 LIVSLVIILVY 11 Unmodified _LIVSLVIILVY_ 0 0 0 tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1 tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1 tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.75927734375 2 622.91505 1243.81555 NaN NaN NaN NaN NaN NaN NaN 74.114 1 74.114 73.614 74.614 0 0 0 0 0.23199 1 14384 14384 6.7232 0 1 26864 26149 17837 17843 26496 26496 0.2033921137579 LIVSYELFPA 10 Unmodified _LIVSYELFPA_ 0 0 0 nc|ENSG00000132185|Q7L513-12|FCRLA;nc|ENSG00000132185|Q7L513-3|FCRLA nc|ENSG00000132185|Q7L513-12|FCRLA nc|ENSG00000132185|Q7L513-12|FCRLA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3209228515625 2 576.320983 1150.62741 NaN NaN NaN NaN NaN NaN NaN 101.94 1 97.919 97.419 98.419 -4.0212 0 0 0 2.8426 1 19591 19591 0.20733 0 1 26865 12325 17838 17844 26497 26497 0.058123534513924824 LIVVLRIVRY 10 Unmodified _LIVVLRIVRY_ 0 0 0 nc|ENSG00000156510|Q2TB90-3|HKDC1 nc|ENSG00000156510|Q2TB90-3|HKDC1 nc|ENSG00000156510|Q2TB90-3|HKDC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7696533203125 2 622.416083 1242.81761 NaN NaN NaN NaN NaN NaN NaN 132.04 1 127.24 126.74 127.74 -4.799 0 0 0 2.8426 1 25420 25420 0.69767 0.69767 1 26866 12392 17839 17845 26498 26498 0.20591684904275098 LIWIVLFRWWH 11 Unmodified _LIWIVLFRWWH_ 0 0 0 REV__ENST00000526903.1_1_11:71671811-71693962:+|nuORF REV__ENST00000526903.1_1_11:71671811-71693962:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6989135742188 3 523.63448 1567.88161 NaN NaN NaN NaN NaN NaN NaN 158.16 1 158.16 157.66 158.66 0 0 0 0 0.23698 1 31754 31754 0.50596 0.051438 1 + 26867 16398 17840 17846 26499 26499 0.12038465061209536 LIWIVLFRWWH 11 Unmodified _LIWIVLFRWWH_ 0 0 0 REV__ENST00000526903.1_1_11:71671811-71693962:+|nuORF REV__ENST00000526903.1_1_11:71671811-71693962:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6979370117188 3 523.63448 1567.88161 NaN NaN NaN NaN NaN NaN NaN 78.223 1 74.457 73.957 74.957 -3.7664 0 0 0 0.23698 1 14830 14830 0.50596 0.09769 1 + 26868 16398 17840 17846 26500 26500 0.12038465061209536 LIWLSPHP 8 Unmodified _LIWLSPHP_ 0 0 0 REV__ENST00000255078.7_1_11:68707211-68707535:+|nuORF REV__ENST00000255078.7_1_11:68707211-68707535:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7768249511719 2 481.776545 961.538538 -0.12703 -6.1198E-05 1.1236 0.00054131 0.99654 0.00048011 481.77694296025123 34.561 0.27568 32.244 32.083 32.359 -2.3175 12 7 2 0 0 0 0.72231 1 6340 6340 11.114 1.767 1 1048000 + 26869 20126 17841 17847 26501 26501 0.056229830023767136 LIWLSPHP 8 Unmodified _LIWLSPHP_ 0 0 0 REV__ENST00000255078.7_1_11:68707211-68707535:+|nuORF REV__ENST00000255078.7_1_11:68707211-68707535:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2514953613281 2 481.776545 961.538538 -0.12703 -6.1198E-05 1.1236 0.00054131 0.99654 0.00048011 481.77694296025123 34.561 0.27568 32.244 32.083 32.359 -2.3175 12 7 2 0 0 0 1.0035 1 6347 6347 11.114 5.354 1 1048000 + 26870 20126 17841 17847 26502 26502 0.056229830023767136 LIWSKEPG 8 Unmodified _LIWSKEPG_ 0 0 0 NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENSG00000010292|ENST00000315579|NCAPD2 NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2591857910156 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 100.93 1 96.633 96.133 97.133 -4.297 0 0 0 0.21486 1 19311 19311 9.3474 0 1 26871 1061 17842 17848 26503 26503 0.03470686385810495 LIWWHWYNHTL 11 Unmodified _LIWWHWYNHTL_ 0 0 0 ENST00000304661.5_1_X:119759908-119760061:-|nuORF ENST00000304661.5_1_X:119759908-119760061:-|nuORF ENST00000304661.5_1_X:119759908-119760061:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6986694335938 3 523.598094 1567.77245 NaN NaN NaN NaN NaN NaN NaN 151.57 1 146.39 145.89 146.89 -5.1759 0 0 0 0.23698 1 29376 29376 1.4551 0.94916 1 26872 8592 17843 17849 26504 26504 0.011278343710955596 LIYAFMGF 8 Unmodified _LIYAFMGF_ 0 0 0 TAAR8|p.D280Y|1|0.25|ENSG00000146385|chr6:132553530-132553530|G/T|missense_variant TAAR8|p.D280Y|1|0.25|ENSG00000146385|chr6:132553530-132553530|G/T|missense_variant TAAR8|p.D280Y|1|0.25|ENSG00000146385|chr6:132553530-132553530|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24468994140625 2 481.246232 960.477911 NaN NaN NaN NaN NaN NaN NaN 114.81 1 114.81 114.31 115.31 0 0 0 0 0.21022 1 22590 22590 17.087 4.555 1 26873 25813 17844 17850 26505 26505 -0.003908703722117934 LIYLEGDP 8 Unmodified _LIYLEGDP_ 0 0 0 REV__nc|ENSG00000204084|P32019-4|INPP5B REV__nc|ENSG00000204084|P32019-4|INPP5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2436218261719 2 460.242201 918.469849 -0.13841 -6.3703E-05 2.8302 0.0013026 2.6918 0.0012389 460.2435165971395 86.057 0.18036 82.33 82.224 82.404 -3.727 7 4 2 0 0 0 0.64227 1 16832 16832 19.439 5.9311 1 821160 + 26874 24237 17845 17851 26506 26506 0.00735273912005141 LIYQTQTI 8 Unmodified _LIYQTQTI_ 0 0 0 REV__ENSG00000135749|ENST00000258229|PCNX2 REV__ENSG00000135749|ENST00000258229|PCNX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2747802734375 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 157.34 1 152.56 152.06 153.06 -4.7885 0 0 0 0.21181 1 31290 31290 15.768 0.92995 1 + 26875 16287 17846 17852 26507 26507 0.04846938211710494 LIYTEFGK 8 Unmodified _LIYTEFGK_ 0 0 0 HGD|p.T244Rfs*36|1|0.24|ENSG00000113924|chr3:120644362-120644362|G/-|frameshift_variant;ENSG00000113924|ENST00000283871|HGD HGD|p.T244Rfs*36|1|0.24|ENSG00000113924|chr3:120644362-120644362|G/-|frameshift_variant HGD|p.T244Rfs*36|1|0.24|ENSG00000113924|chr3:120644362-120644362|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.18035888671875 3 324.179654 969.517133 NaN NaN NaN NaN NaN NaN NaN 64.12 1 61.123 60.623 61.623 -2.9975 0 0 0 0.21486 1 12398 12398 3.5965 1.3137 1 26876 2769 17847 17853 26508 26508 0.031155531829995198 LKAELSSYKA 10 Unmodified _LKAELSSYKA_ 0 0 0 REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 555.315185546875 2 555.313689 1108.61282 NaN NaN NaN NaN NaN NaN NaN 167.12 1 167.12 166.62 167.62 0 0 0 0 0.22588 1 34133 34133 5.7319 0 1 + 26877 17908 17848 17854 26509 26509 0.06286281303255237 LKAFAYIAGK 10 Unmodified _LKAFAYIAGK_ 0 0 0 REV__tr|U7STN5|U7STN5_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01128PE=3SV=1 REV__tr|U7STN5|U7STN5_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01128PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2750244140625 2 541.32386 1080.63317 NaN NaN NaN NaN NaN NaN NaN 165.93 1 160.98 160.48 161.48 -4.9484 0 0 0 0.22559 1 32461 32461 17.113 0 1 + 26878 25118 17849 17855 26510 26510 0.09607496753687883 LKAKKKKLK 9 Unmodified _LKAKKKKLK_ 0 0 0 ENST00000539429.1_1_12:124144026-124144779:+|nuORF;nc|ENSG00000111358|Q13889-2|GTF2H3;ENSG00000111358|ENST00000543341|GTF2H3 ENST00000539429.1_1_12:124144026-124144779:+|nuORF ENST00000539429.1_1_12:124144026-124144779:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.2684631347656 3 362.269138 1083.78558 NaN NaN NaN NaN NaN NaN NaN 54.591 1 51.707 51.207 52.207 -2.8837 0 0 0 0.23508 1 10424 10424 0 0 1 26879 2619 17850 17856 26511 26511 0.24704317221107885 LKAKKKKLK 9 Unmodified _LKAKKKKLK_ 0 0 0 ENST00000539429.1_1_12:124144026-124144779:+|nuORF;nc|ENSG00000111358|Q13889-2|GTF2H3;ENSG00000111358|ENST00000543341|GTF2H3 ENST00000539429.1_1_12:124144026-124144779:+|nuORF ENST00000539429.1_1_12:124144026-124144779:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 362.2679138183594 3 362.269138 1083.78558 NaN NaN NaN NaN NaN NaN NaN 54.997 1 51.859 51.359 52.359 -3.1377 0 0 0 0.23508 1 10197 10197 0 0 1 26880 2619 17850 17856 26512 26512 0.24704317221107885 LKAKLLRR 8 Unmodified _LKAKLLRR_ 0 0 0 KDM4B|p.P511Lfs*8|1|0.14|ENSG00000127663|chr19:5131288-5131288|C/-|frameshift_variant;nc|ENSG00000127663|O94953-2|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B KDM4B|p.P511Lfs*8|1|0.14|ENSG00000127663|chr19:5131288-5131288|C/-|frameshift_variant;ENST00000589104.5_1_19:5070919-5151519:+|nuORF ENST00000589104.5_1_19:5070919-5151519:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.2171936035156 3 333.237949 996.692019 NaN NaN NaN NaN NaN NaN NaN 72.009 1 68.382 67.882 68.882 -3.6275 0 0 0 0.2396 1 13591 13591 0.30703 0 1 26881 3488;11990 17851 17857 26513 26513 0.19354017838713844 LKANFVSTV 9 Unmodified _LKANFVSTV_ 0 0 0 ENST00000197268.12_1_12:13235312-13235447:+|nuORF ENST00000197268.12_1_12:13235312-13235447:+|nuORF ENST00000197268.12_1_12:13235312-13235447:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2581787109375 2 489.784567 977.554582 NaN NaN NaN NaN NaN NaN NaN 95.652 1 91.461 90.961 91.961 -4.1911 0 0 0 0.19657 1 18257 18257 4.897 0 1 26882 8085 17852 17858 26514 26514 0.06490644448615512 LKASAEFY 8 Unmodified _LKASAEFY_ 0 0 0 REV__ENSG00000126458|ENST00000246792|RRAS REV__ENSG00000126458|ENST00000246792|RRAS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16448974609375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 72.566 1 68.938 68.438 69.438 -3.6275 0 0 0 0.23698 1 13703 13703 0.25148 0 1 + 26883 15855 17853 17859 26515 26515 0.00354693631857117 LKASAPAPGHH 11 Unmodified _LKASAPAPGHH_ 0 0 0 ENST00000553449.1_1_14:104379005-104387837:-|nuORF;ENSG00000156411|ENST00000286953|ATP5MJ;nc|ENSG00000156411|P56378-2|ATP5MJ ENST00000553449.1_1_14:104379005-104387837:-|nuORF ENST00000553449.1_1_14:104379005-104387837:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.796630859375 2 543.296165 1084.57778 -0.2754 -0.00014962 -0.61845 -0.000336 -0.89385 -0.00048562 543.2959451311685 15.833 0.14094 14.617 14.55 14.691 -1.2159 5 3 2 0 0 0 0.59903 1 2469 2469 18.146 6.5061 1 223760 26884 5087 17854 17860 26516 26516 0.03887083285940207 LKAVRLIT 8 Unmodified _LKAVRLIT_ 0 0 0 REV__tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1 REV__tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.224853515625 3 305.211289 912.612037 NaN NaN NaN NaN NaN NaN NaN 23.258 1 21.469 20.969 21.969 -1.7886 0 0 0 0.2396 1 3732 3732 0.0082765 0 1 + 26885 24899 17855 17861 26517 26517 0.1522353144483759 LKCANKFSLQ 10 Unmodified _LKCANKFSLQ_ 0 0 0 REV__ENSG00000064835|ENST00000350375|POU1F1 REV__ENSG00000064835|ENST00000350375|POU1F1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.319580078125 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 142.31 1 142.31 141.81 142.81 0 0 0 0 0.22573 1 28374 28374 15.248 0.8431 1 + 26886 14174 17856 17862 26518 26518 0.047580475252971155 LKCQCPNLY 9 Unmodified _LKCQCPNLY_ 0 0 0 MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant;nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17 MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2635498046875 2 541.262087 1080.50962 0.29463 0.00015947 -1.9681 -0.0010652 -1.6734 -0.00090577 541.2615514929707 118.02 0.8166 118.02 117.51 118.33 0 36 22 2 0 0 0 0.55979 1 23289 23289 15.847 1.9411 1 3982400 26887 6016 17857 17863 26519 26519 -0.027412456805905094 LKDAILKYN 9 Unmodified _LKDAILKYN_ 0 0 0 nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG nc|ENSG00000227345|Q86W56-5|PARG nc|ENSG00000227345|Q86W56-5|PARG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2159729003906 3 359.881608 1076.623 -0.69014 -0.00024837 0.87095 0.00031344 0.1808 6.5067E-05 359.8818308289869 95.385 0.79813 91.504 91.09 91.888 -3.881 48 22 3 0 0 0 0.6427 1 18265 18265 10.151 0 1 3604200 26888 7798 17858 17864 26520 26520 0.08774889028472899 LKDILHYDY 9 Unmodified _LKDILHYDY_ 0 0 0 REV__ENSG00000134827|ENST00000257264|TCN1 REV__ENSG00000134827|ENST00000257264|TCN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2489624023438 2 590.305864 1178.59717 NaN NaN NaN NaN NaN NaN NaN 142.83 1 138.17 137.67 138.67 -4.656 0 0 0 0.23508 1 28234 28234 10.074 3.3508 1 + 26889 16232 17859 17865 26521 26521 0.015019947861901528 LKDVFRSDL 9 Unmodified _LKDVFRSDL_ 0 0 0 REV__GABRD|p.I415Hfs*14|1|0.24|ENSG00000187730|chr1:2030158-2030159|-/G|frameshift_variant REV__GABRD|p.I415Hfs*14|1|0.24|ENSG00000187730|chr1:2030158-2030159|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7725830078125 2 546.806031 1091.59751 0.33313 0.00018216 -0.25026 -0.00013684 0.082869 4.5313E-05 546.8058049444979 101.27 0.78251 96.975 96.572 97.354 -4.297 54 22 4 0 0 0 0.44932 1 19415 19415 22.736 0 1 6928800 + 26890 19107 17860 17866 26522 26522 0.05537414506034111 LKEEAAMK 8 Unmodified _LKEEAAMK_ 0 0 0 ENSG00000114023|ENST00000477892|FAM162A;FAM162A|p.A151V|1|0.16|ENSG00000114023|chr3:122409818-122409818|C/T|missense_variant ENSG00000114023|ENST00000477892|FAM162A ENSG00000114023|ENST00000477892|FAM162A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2488708496094 2 460.249503 918.484453 NaN NaN NaN NaN NaN NaN NaN 17.687 1 16.415 15.915 16.915 -1.2722 0 0 0 0.18734 1 2618 2618 29.082 9.8246 1 26891 2771 17861 17867 26523 26523 0.021950227884985907 LKEHCVSI 8 Unmodified _LKEHCVSI_ 0 0 0 ENSG00000105397|ENST00000525621|TYK2 ENSG00000105397|ENST00000525621|TYK2 ENSG00000105397|ENST00000525621|TYK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1696472167969 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 108.32 1 108.32 107.82 108.82 0 0 0 0 0.21486 1 21302 21302 3.5965 0 1 26892 2306 17862 17868 26524 26524 0.018144425083505666 LKEKERDK 8 Unmodified _LKEKERDK_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1;REV__ENSG00000126870|ENST00000407559|DYNC2I1 REV__ENSG00000126870|ENST00000407559|DYNC2I1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6828002929688 2 523.303655 1044.59276 0.18799 9.8374E-05 0.28254 0.00014785 0.47052 0.00024623 523.3016584984922 131.78 0.14044 131.78 131.71 131.85 0 5 3 2 0 0 0 0.88497 1 26048 26048 6.2058 0 1 1105500 26893 15870;2755 17863 17869 26525 26525 0.07224530363282611 LKEKIPLLIED 11 Unmodified _LKEKIPLLIED_ 0 0 0 REV__tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1 REV__tr|U7SRP2|U7SRP2_FUSNUGlucokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01608PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21746826171875 3 437.602511 1309.7857 NaN NaN NaN NaN NaN NaN NaN 111.59 1 107.1 106.6 107.6 -4.4915 0 0 0 0.23698 1 21416 21416 1.1098 0.096179 1 + 26894 25035 17864 17870 26526 26526 0.14320227639791483 LKELEERMLHW 11 Unmodified _LKELEERMLHW_ 0 0 0 ENST00000451107.3_1_12:95475298-95611245:-|nuORF;ENSG00000180263|ENST00000343958|FGD6;nc|ENSG00000180263|Q6ZV73-2|FGD6 ENST00000451107.3_1_12:95475298-95611245:-|nuORF ENST00000451107.3_1_12:95475298-95611245:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3901977539062 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 153.2 1 147.93 147.43 148.43 -5.2669 0 0 0 0.22632 1 29697 29697 0.0059557 0 1 26895 6664 17865 17871 26527 26527 0.04324733708358508 LKELEERMLHW 11 Unmodified _LKELEERMLHW_ 0 0 0 ENST00000451107.3_1_12:95475298-95611245:-|nuORF;ENSG00000180263|ENST00000343958|FGD6;nc|ENSG00000180263|Q6ZV73-2|FGD6 ENST00000451107.3_1_12:95475298-95611245:-|nuORF ENST00000451107.3_1_12:95475298-95611245:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3895263671875 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 134.33 1 129.51 129.01 130.01 -4.8175 0 0 0 0.22632 1 25862 25862 0.026206 0 1 26896 6664 17865 17871 26528 26528 0.04324733708358508 LKELIHRQ 8 Unmodified _LKELIHRQ_ 0 0 0 ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2;ENST00000495782.1_1_3:113801459-113804748:+|nuORF;ENST00000483272.1_1_3:113798714-113804748:+|nuORF;nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2 ENSG00000151576|ENST00000281273|QTRT2 ENSG00000151576|ENST00000281273|QTRT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.8372802734375 3 346.213581 1035.61891 -0.39762 -0.00013766 0.24771 8.5761E-05 -0.14991 -5.19E-05 346.2136331892244 18.032 0.21765 16.721 16.614 16.831 -1.3109 11 5 3 0 0 0 8448 1 2906 2906 1.7423 0 1 631540 26897 4874 17866 17872 26529 26529 0.10252844325418664 LKELIHRQ 8 Unmodified _LKELIHRQ_ 0 0 0 ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2;ENST00000495782.1_1_3:113801459-113804748:+|nuORF;ENST00000483272.1_1_3:113798714-113804748:+|nuORF;nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2 ENSG00000151576|ENST00000281273|QTRT2 ENSG00000151576|ENST00000281273|QTRT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 346.213581 1035.61891 -0.4117 -0.00014254 0.24753 8.5698E-05 -0.16417 -5.6839E-05 346.21364275840494 16.697 0.20283 16.697 16.613 16.816 0 -0.013222 3.7504E-05 NaN 1.7423 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 645240 26898 4874 17866 17872 0.10252844325418664 LKELIHRQ 8 Unmodified _LKELIHRQ_ 0 0 0 ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2;ENST00000495782.1_1_3:113801459-113804748:+|nuORF;ENST00000483272.1_1_3:113798714-113804748:+|nuORF;nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2 ENSG00000151576|ENST00000281273|QTRT2 ENSG00000151576|ENST00000281273|QTRT2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 346.213581 1035.61891 -0.39762 -0.00013766 0.24771 8.5761E-05 -0.14991 -5.19E-05 346.2136331892244 18.032 0.21765 16.721 16.614 16.831 -1.3109 0.01046 3.7693E-05 NaN 1.7423 11 5 3 NaN NaN NaN NaN 0 NaN NaN 0 631540 26899 4874 17866 17872 0.10252844325418664 LKELIHRQ 8 Unmodified _LKELIHRQ_ 0 0 0 ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2;ENST00000495782.1_1_3:113801459-113804748:+|nuORF;ENST00000483272.1_1_3:113798714-113804748:+|nuORF;nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2 ENSG00000151576|ENST00000281273|QTRT2 ENSG00000151576|ENST00000281273|QTRT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 346.213581 1035.61891 -0.40492 -0.00014019 0.14543 5.0349E-05 -0.2595 -8.9841E-05 346.2136441624002 17.985 0.27457 16.713 16.556 16.831 -1.2722 0.0027618 -6.8543E-05 NaN 1.7423 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 666680 26900 4874 17866 17872 0.10252844325418664 LKESYPVF 8 Unmodified _LKESYPVF_ 0 0 0 ENST00000442902.1_1_20:50727220-50727574:-|nuORF ENST00000442902.1_1_20:50727220-50727574:-|nuORF ENST00000442902.1_1_20:50727220-50727574:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 491.2986145019531 2 491.765843 981.517133 NaN NaN NaN NaN NaN NaN NaN 137.42 1 132.77 132.27 133.27 -4.6413 0 0 0 0.21486 1 27120 27120 11.64 1.5664 1 26901 9905 17867 17873 26530 26530 0.025635531829948377 LKETLLSSRR 10 Unmodified _LKETLLSSRR_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2894897460938 2 601.864412 1201.71427 NaN NaN NaN NaN NaN NaN NaN 165.82 1 165.82 165.32 166.32 0 0 0 0 2.8426 1 33698 33698 0.063865 0 1 + 26902 14487 17868 17874 26531 26531 0.12148152725785621 LKETRIYSL 9 Unmodified _LKETRIYSL_ 0 0 0 REV__ENSG00000150627|ENST00000508596|WDR17 REV__ENSG00000150627|ENST00000508596|WDR17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.2123107910156 3 374.888763 1121.64446 -0.21407 -8.0253E-05 0.043194 1.6193E-05 -0.17088 -6.406E-05 374.88877309054664 80.779 1.0485 77.222 76.708 77.757 -3.557 101 29 5 0 0 0 0.45972 1 15798 15798 8.1555 8.1555 1 25746000 + 26903 17036 17869 17875 26532 26532 0.08850274057181196 LKEVDETRKCY 11 Unmodified _LKEVDETRKCY_ 0 0 0 ENSG00000143256|ENST00000368010|PFDN2 ENSG00000143256|ENST00000368010|PFDN2 ENSG00000143256|ENST00000368010|PFDN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 692.31103515625 2 692.350477 1382.6864 NaN NaN NaN NaN NaN NaN NaN 163.89 1 158.83 158.33 159.33 -5.0648 0 0 0 0.23087 1 31921 31921 7.609 4.6137 1 26904 4467 17870 17876 26533 26533 0.01036461683406742 LKFALALLF 9 Unmodified _LKFALALLF_ 0 0 0 REV__ENSG00000145248|ENST00000273861|SLC10A4 REV__ENSG00000145248|ENST00000273861|SLC10A4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.93341064453125 3 345.891556 1034.65284 NaN NaN NaN NaN NaN NaN NaN 11.605 1 10.701 10.201 11.201 -0.90401 0 0 0 0.23508 1 1549 1549 0 0 1 + 26905 16832 17871 17877 26534 26534 0.13689872764439315 LKFLRLLQL 9 Unmodified _LKFLRLLQL_ 0 0 0 REV__nc|ENSG00000186815|Q9ULQ1-2|TPCN1 REV__nc|ENSG00000186815|Q9ULQ1-2|TPCN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 572.3826293945312 2 572.384251 1142.75395 NaN NaN NaN NaN NaN NaN NaN 167.22 1 167.22 166.72 167.72 0 0 0 0 0.19652 1 34158 34158 0.073264 0 1 + 26906 19055 17872 17878 26535 26535 0.18828324467176571 LKFQLTKISI 10 Unmodified _LKFQLTKISI_ 0 0 0 nc|ENSG00000115459|Q96FG2-6|ELMOD3 nc|ENSG00000115459|Q96FG2-6|ELMOD3 nc|ENSG00000115459|Q96FG2-6|ELMOD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 595.7223510742188 2 595.878999 1189.74344 NaN NaN NaN NaN NaN NaN NaN 167.62 1 162.73 162.23 163.23 -4.8916 0 0 0 2.8426 1 32990 32990 1.9064 1.8626 1 26907 12292 17873 17879 26536 26536 0.15616297022074832 LKFRKKKV 8 Unmodified _LKFRKKKV_ 0 0 0 ENST00000378230.7_1_1:3743286-3745840:-|nuORF ENST00000378230.7_1_1:3743286-3745840:-|nuORF ENST00000378230.7_1_1:3743286-3745840:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6962890625 2 523.863486 1045.71242 NaN NaN NaN NaN NaN NaN NaN 152.53 1 147.78 147.28 148.28 -4.7523 0 0 0 0.2396 1 30309 30309 0.30703 0 1 26908 9278 17874 17880 26537 26537 0.19139188498502335 LKGKDALAFK 10 Unmodified _LKGKDALAFK_ 0 0 0 HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|349|3|anti-sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|349|3|anti-sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|349|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 364.2281799316406 3 364.225486 1089.65463 NaN NaN NaN NaN NaN NaN NaN 128.84 1 124.02 123.52 124.52 -4.817 0 0 0 2.8426 1 24732 24732 0.043787 0 1 26909 11882 17875 17881 26538 26538 0.11338881782398857 LKGTTPTG 8 Unmodified _LKGTTPTG_ 0 0 0 REV__SSC5D|p.A955T|1|0.34|ENSG00000179954|chr19:55513088-55513088|G/A|missense_variant REV__SSC5D|p.A955T|1|0.34|ENSG00000179954|chr19:55513088-55513088|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7215576171875 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 42.719 1 40 39.5 40.5 -2.7191 0 0 0 0.21486 1 7996 7996 2.3027 0 1 + 26910 24738 17876 17882 26539 26539 0.032541379433382644 LKHKKKHY 8 Unmodified _LKHKKKHY_ 0 0 0 REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2741088867188 2 541.335093 1080.65563 NaN NaN NaN NaN NaN NaN NaN 61.04 1 61.04 60.54 61.54 0 0 0 0 0.23711 1 11711 11711 0.62683 0 1 + 26911 13131 17877 17883 26540 26540 0.118531409419802 LKIAHNALIVS 11 Unmodified _LKIAHNALIVS_ 0 0 0 REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2697143554688 2 589.866423 1177.71829 0.36395 0.00021468 3.8691 0.0022823 4.2331 0.002497 589.8677523621318 114.21 0.17645 109.74 109.65 109.83 -4.4726 5 4 2 0 0 0 0.96118 1 22497 22497 1.0715 0 1 608320 + 26912 15888 17878 17884 26541 26541 0.13654242219513435 LKIKKKLK 8 Unmodified _LKIKKKLK_ 0 0 0 ENST00000239878.8_1_13:38935738-38935825:+|nuORF ENST00000239878.8_1_13:38935738-38935825:+|nuORF ENST00000239878.8_1_13:38935738-38935825:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 500.026611328125 2 499.876062 997.737572 NaN NaN NaN NaN NaN NaN NaN 12.487 1 12.487 11.987 12.987 0 0 0 0 0.2396 1 1742 1742 0.30703 0 1 26913 8179 17879 17885 26542 26542 0.23861243301087143 LKIKLPKLPEL 11 Unmodified _LKIKLPKLPEL_ 0 0 0 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 646.0907592773438 2 646.439224 1290.86389 NaN NaN NaN NaN NaN NaN NaN 176.17 1 171.27 170.77 171.77 -4.9008 0 0 0 0.22632 1 35120 35120 0.00056442 0 1 + 26914 15857 17880 17886 26543 26543 0.23009705015715554 LKIKSLRKKF 10 Unmodified _LKIKSLRKKF_ 0 0 0 ENST00000478965.1_1_5:94162274-94162319:-|nuORF ENST00000478965.1_1_5:94162274-94162319:-|nuORF ENST00000478965.1_1_5:94162274-94162319:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.753173828125 2 630.929357 1259.84416 NaN NaN NaN NaN NaN NaN NaN 133.42 1 128.55 128.05 129.05 -4.8726 0 0 0 0.22588 1 25632 25632 0.40072 0 1 26915 10334 17881 17887 26544 26544 0.2246337379558554 LKIKTYPPL 9 Unmodified _LKIKTYPPL_ 0 0 0 REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|21|2|sense REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|21|2|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.27032470703125 3 358.230349 1071.66922 -0.25181 -9.0205E-05 0.31148 0.00011158 0.059673 2.1377E-05 358.23039585259056 138.03 0.51819 138.03 137.8 138.32 0 23 14 2 0 0 0 0.87497 1 27370 27370 4.897 4.897 1 2707000 + 26916 23744 17882 17888 26545 26545 0.13624953930548145 LKILIILIVLL 11 Unmodified _LKILIILIVLL_ 0 0 0 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 632.4351806640625 2 632.472535 1262.93052 NaN NaN NaN NaN NaN NaN NaN 172.16 1 167.37 166.87 167.87 -4.7898 0 0 0 0.23698 1 35053 35053 0.30703 0 1 26917 25934 17883 17889 26546 26546 0.30956940577607384 LKKDRIMLENV 11 Unmodified _LKKDRIMLENV_ 0 0 0 REV__tr|U7SUB5|U7SUB5_FUSNUGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpsAPE=3SV=1 REV__tr|U7SUB5|U7SUB5_FUSNUGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpsAPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.9034118652344 3 453.598995 1357.77516 -0.70741 -0.00032088 0.40585 0.00018409 -0.30156 -0.00013679 453.59913489192667 14.127 0.20986 12.954 12.897 13.107 -1.173 6 5 2 0 0 0 0.88733 1 1893 1893 5.4027 3.4963 1 289260 + 26918 25155 17884 17890 26547 26547 0.11057921713700125 LKKEKRKKRRQ 11 Unmodified _LKKEKRKKRRQ_ 0 0 0 nc|ENSG00000212643|Q15695|ZRSR2P1;ENSG00000169249|ENST00000307771|ZRSR2 nc|ENSG00000212643|Q15695|ZRSR2P1 nc|ENSG00000212643|Q15695|ZRSR2P1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 499.89892578125 3 499.998592 1496.97395 NaN NaN NaN NaN NaN NaN NaN 142.31 1 137.66 137.16 138.16 -4.656 0 0 0 0.22632 1 28129 28129 0.00056442 0 1 26919 12587 17885 17891 26548 26548 0.24533943127426028 LKKEKSMASG 10 Unmodified _LKKEKSMASG_ 0 0 0 REV__ENST00000510014.1_1_5:109175914-109176286:-|nuORF REV__ENST00000510014.1_1_5:109175914-109176286:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015380859375 3 360.202353 1077.58523 NaN NaN NaN NaN NaN NaN NaN 4.1685 1 3.1596 2.6596 3.6596 -1.0089 0 0 0 0.22588 1 28 28 0.56317 0.16245 1 + 26920 19738 17886 17892 26549 26549 0.049540547713377237 LKKERALA 8 Unmodified _LKKERALA_ 0 0 0 REV__SLC30A9|p.R194H|1|0.2|ENSG00000014824|chr4:42023355-42023355|G/A|missense_variant REV__SLC30A9|p.R194H|1|0.2|ENSG00000014824|chr4:42023355-42023355|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16485595703125 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 138.26 1 133.42 132.92 133.92 -4.84 0 0 0 0.2396 1 26642 26642 0.12286 0 1 + 26921 13955 17887 17893 26550 26550 0.11986056922398802 LKKILLILIL 10 Unmodified _LKKILLILIL_ 0 0 0 REV__ENSG00000177098|ENST00000324727|SCN4B REV__ENSG00000177098|ENST00000324727|SCN4B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2609252929688 2 590.443778 1178.873 NaN NaN NaN NaN NaN NaN NaN 170.92 1 166.01 165.51 166.51 -4.9149 0 0 0 0.22588 1 33814 33814 0.40072 0 1 + 26922 18539 17888 17894 26551 26551 0.29072098372034816 LKKILLILIL 10 Unmodified _LKKILLILIL_ 0 0 0 REV__ENSG00000177098|ENST00000324727|SCN4B REV__ENSG00000177098|ENST00000324727|SCN4B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2718505859375 2 590.443778 1178.873 NaN NaN NaN NaN NaN NaN NaN 173.59 1 168.7 168.2 169.2 -4.8977 0 0 0 0.22588 1 34474 34474 0.40072 0 1 + 26923 18539 17888 17894 26552 26552 0.29072098372034816 LKKIYKLILI 10 Unmodified _LKKIYKLILI_ 0 0 0 REV__tr|U7T051|U7T051_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00728PE=3SV=1 REV__tr|U7T051|U7T051_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00728PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7772216796875 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 168.98 1 168.98 168.48 169.48 0 0 0 0 0.22588 1 34657 34657 0.40072 0 1 + 26924 25261 17889 17895 26553 26553 0.25098910366659766 LKKIYKLILI 10 Unmodified _LKKIYKLILI_ 0 0 0 REV__tr|U7T051|U7T051_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00728PE=3SV=1 REV__tr|U7T051|U7T051_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00728PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.77978515625 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 167.14 1 162.19 161.69 162.69 -4.948 0 0 0 0.22588 1 32847 32847 0.40072 0 1 + 26925 25261 17889 17895 26554 26554 0.25098910366659766 LKKKKKERKKK 11 Unmodified _LKKKKKERKKK_ 0 0 0 ENST00000078429.8_1_19:3121435-3121495:+|nuORF ENST00000078429.8_1_19:3121435-3121495:+|nuORF ENST00000078429.8_1_19:3121435-3121495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23931884765625 3 481.339955 1440.99804 NaN NaN NaN NaN NaN NaN NaN 140.94 1 136.29 135.79 136.79 -4.6493 0 0 0 0.22632 1 27834 27834 0 0 1 26926 8072 17890 17896 26555 26555 0.29517783561072974 LKKKKKIRG 9 Unmodified _LKKKKKIRG_ 0 0 0 ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-4|SART3 ENSG00000075856|ENST00000546815|SART3 ENSG00000075856|ENST00000546815|SART3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 366.9123229980469 3 366.932637 1097.77608 NaN NaN NaN NaN NaN NaN NaN 13.577 1 13.577 13.077 14.077 0 0 0 0 0.19635 1 1969 1969 0 0 1 26927 1529 17891 17897 26556 26556 0.23110548935574116 LKKKKKIRG 9 Unmodified _LKKKKKIRG_ 0 0 0 ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-4|SART3 ENSG00000075856|ENST00000546815|SART3 ENSG00000075856|ENST00000546815|SART3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.9321594238281 3 366.932637 1097.77608 NaN NaN NaN NaN NaN NaN NaN 10.045 1 9.2508 8.7508 9.7508 -0.79424 0 0 0 0.23508 1 1218 1218 0 0 1 26928 1529 17891 17897 26557 26557 0.23110548935574116 LKKKKKIRG 9 Unmodified _LKKKKKIRG_ 0 0 0 ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-4|SART3 ENSG00000075856|ENST00000546815|SART3 ENSG00000075856|ENST00000546815|SART3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 366.9328918457031 3 366.932637 1097.77608 NaN NaN NaN NaN NaN NaN NaN 10.063 1 8.9971 8.4971 9.4971 -1.0664 0 0 0 0.23508 1 1068 1068 0 0 1 26929 1529 17891 17897 26558 26558 0.23110548935574116 LKKKKKKK 8 Unmodified _LKKKKKKK_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;ENST00000368679.8_1_10:127702855-127703017:-|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;ENST00000495836.1_1_2:69771529-69870271:-|nuORF;AluSx3_dup29941|chr19:41720501-41720799:-|1.5544935485926912|0.0583639242761596|4.74|481.0|9|3|sense;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000378026.4_3_12:106631761-106631812:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000198929|O75052-3|NOS1AP REV__ENST00000377291.2_1_5:175110088-175110163:+|nuORF;nc|ENSG00000174780|O76094-2|SRP72;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000378026.4_3_12:106631761-106631812:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000198929|O75052-3|NOS1AP;REV__AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;REV__KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant ENST00000522197.1_1_8:122652185-122654912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 514.8870849609375 2 514.886961 1027.75937 NaN NaN NaN NaN NaN NaN NaN 65.45 1 65.45 64.95 65.95 0 0 0 0 0.21486 1 12621 12621 0.69038 0 1 26930 6369;10770;13032;8889;18832;21093;9272;12228;12555 17892 17898 26559 26559 0.24660048049622674 LKKKKKKKAL 10 Unmodified _LKKKKKKKAL_ 0 0 0 REV__ENST00000377291.2_1_5:175110088-175110163:+|nuORF REV__ENST00000377291.2_1_5:175110088-175110163:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 404.9686584472656 3 404.967459 1211.88055 NaN NaN NaN NaN NaN NaN NaN 9.4558 1 9.4558 8.9558 9.9558 0 0 0 0 0.22588 1 1094 1094 0 0 1 + 26931 21093 17893 17899 26560 26560 0.28308250692316506 LKKKKKKKAL 10 Unmodified _LKKKKKKKAL_ 0 0 0 REV__ENST00000377291.2_1_5:175110088-175110163:+|nuORF REV__ENST00000377291.2_1_5:175110088-175110163:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 404.9383850097656 3 404.967459 1211.88055 NaN NaN NaN NaN NaN NaN NaN 10.027 1 9.2329 8.7329 9.7329 -0.79424 0 0 0 0.22588 1 1214 1214 0 0 1 + 26932 21093 17893 17899 26561 26561 0.28308250692316506 LKKKKKKKAL 10 Unmodified _LKKKKKKKAL_ 0 0 0 REV__ENST00000377291.2_1_5:175110088-175110163:+|nuORF REV__ENST00000377291.2_1_5:175110088-175110163:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 404.9397277832031 3 404.967459 1211.88055 NaN NaN NaN NaN NaN NaN NaN 10.616 1 9.7124 9.2124 10.212 -0.90401 0 0 0 0.22588 1 1344 1344 0 0 1 + 26933 21093 17893 17899 26562 26562 0.28308250692316506 LKKKKKKKAL 10 Unmodified _LKKKKKKKAL_ 0 0 0 REV__ENST00000377291.2_1_5:175110088-175110163:+|nuORF REV__ENST00000377291.2_1_5:175110088-175110163:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 606.946533203125 2 606.94755 1211.88055 NaN NaN NaN NaN NaN NaN NaN 164.06 1 159.02 158.52 159.52 -5.0446 0 0 0 2.8426 1 31965 31965 0 0 1 + 26934 21093 17893 17899 26563 26563 0.28308250692316506 LKKKKKKKK 9 Unmodified _LKKKKKKKK_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;ENST00000368679.8_1_10:127702855-127703017:-|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;ENST00000495836.1_1_2:69771529-69870271:-|nuORF;AluSx3_dup29941|chr19:41720501-41720799:-|1.5544935485926912|0.0583639242761596|4.74|481.0|9|3|sense;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF nc|ENSG00000174780|O76094-2|SRP72;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;REV__AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;REV__KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant ENST00000522197.1_1_8:122652185-122654912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 386.2919616699219 3 386.292054 1155.85433 NaN NaN NaN NaN NaN NaN NaN 153.17 1 153.17 152.67 153.67 0 0 0 0 0.23508 1 30688 30688 0 0 1 26935 6369;10770;13032;8889;18832 17894 17900 26564 26564 0.28263981520808557 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72 nc|ENSG00000174780|O76094-2|SRP72 nc|ENSG00000174780|O76094-2|SRP72 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.3003234863281 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 39.247 1 39.247 38.747 39.747 0 0 0 0 0.22588 1 7284 7284 0.62683 0 1 26936 6369 17895 17901 26565 26565 0.2778736654952354 LKKKKKKLF 9 Unmodified _LKKKKKKLF_ 0 0 0 REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 580.9124755859375 2 580.915719 1159.81688 NaN NaN NaN NaN NaN NaN NaN 166.73 1 161.78 161.28 162.28 -4.948 0 0 0 0.23508 1 32716 32716 0.52476 0 1 + 26937 21069 17896 17902 26566 26566 0.2433689025519925 LKKKKKLHLR 10 Unmodified _LKKKKKLHLR_ 0 0 0 REV__ENST00000344862.9_1_12:44119226-44119532:-|nuORF REV__ENST00000344862.9_1_12:44119226-44119532:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 646.4656982421875 2 646.456074 1290.89759 NaN NaN NaN NaN NaN NaN NaN 167.09 1 162.2 161.7 162.7 -4.8916 0 0 0 0.22588 1 32812 32812 0.35063 0.043601 1 + 26938 20745 17897 17903 26567 26567 0.26378171298097186 LKKKKVKKS 9 Unmodified _LKKKKVKKS_ 0 0 0 ENST00000337872.8_1_4:4304620-4317556:+|nuORF ENST00000337872.8_1_4:4304620-4317556:+|nuORF ENST00000337872.8_1_4:4304620-4317556:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7702026367188 2 543.889701 1085.76485 -0.019362 -1.0531E-05 -1.8345 -0.00099778 -1.8539 -0.0010083 543.8873629506107 44.095 0.2109 41.329 41.149 41.36 -2.7661 6 5 2 0 0 0 0.88442 1 7960 7960 0.52476 0.52476 1 369920 26939 8821 17898 17904 26568 26568 0.22539726841455376 LKKKLFLK 8 Unmodified _LKKKLFLK_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 509.350341796875 2 509.362788 1016.71102 NaN NaN NaN NaN NaN NaN NaN 139.62 1 134.98 134.48 135.48 -4.6439 0 0 0 0.2396 1 27564 27564 0 0 1 26940 8872 17899 17905 26569 26569 0.2033355440972855 LKKLDAKY 8 Unmodified _LKKLDAKY_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27069091796875 2 489.80276 977.590967 0.19001 9.3066E-05 -0.042514 -2.0823E-05 0.14749 7.2242E-05 489.80288085838095 21.951 0.31753 21.951 21.804 22.121 0 10 8 2 0 0 0 1.0011 1 3710 3710 7.9102 0 1 821070 + 26941 18819 17900 17906 26570 26570 0.10127521345316381 LKKLLQAIAP 10 Unmodified _LKKLLQAIAP_ 0 0 0 REV__ENSG00000196455|ENST00000356763|PIK3R4 REV__ENSG00000196455|ENST00000356763|PIK3R4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7886962890625 2 547.868434 1093.72232 NaN NaN NaN NaN NaN NaN NaN 161.75 1 156.56 156.06 157.06 -5.1878 0 0 0 0.22588 1 31395 31395 3.5965 1.7523 1 + 26942 19247 17901 17907 26571 26571 0.17920331713207815 LKKLVLLRR 9 Unmodified _LKKLVLLRR_ 0 0 0 ENST00000260731.4_1_10:94388614-94388647:+|nuORF ENST00000260731.4_1_10:94388614-94388647:+|nuORF ENST00000260731.4_1_10:94388614-94388647:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 380.1783752441406 3 380.276404 1137.80738 NaN NaN NaN NaN NaN NaN NaN 177.37 1 172.58 172.08 173.08 -4.7898 0 0 0 0.19631 1 36277 36277 0.20686 0 1 26943 8286 17902 17908 26572 26572 0.24399121969690896 LKKLVLLRR 9 Unmodified _LKKLVLLRR_ 0 0 0 ENST00000260731.4_1_10:94388614-94388647:+|nuORF ENST00000260731.4_1_10:94388614-94388647:+|nuORF ENST00000260731.4_1_10:94388614-94388647:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 380.1842041015625 3 380.276404 1137.80738 NaN NaN NaN NaN NaN NaN NaN 177.44 1 172.54 172.04 173.04 -4.9088 0 0 0 0.19631 1 35388 35388 0.20686 0 1 26944 8286 17902 17908 26573 26573 0.24399121969690896 LKKPIVGRKI 10 Unmodified _LKKPIVGRKI_ 0 0 0 ENSG00000141642|ENST00000269466|ELAC1 ENSG00000141642|ENST00000269466|ELAC1 ENSG00000141642|ENST00000269466|ELAC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3228149414062 2 576.402976 1150.7914 NaN NaN NaN NaN NaN NaN NaN 161.36 1 156.13 155.63 156.63 -5.2299 0 0 0 2.8426 1 31339 31339 0.043787 0.043787 1 26945 4390 17903 17909 26574 26574 0.22203415732792564 LKKPLVLQKI 10 Unmodified _LKKPLVLQKI_ 0 0 0 ENSG00000147082|ENST00000376042|CCNB3 ENSG00000147082|ENST00000376042|CCNB3 ENSG00000147082|ENST00000376042|CCNB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.255859375 2 590.413009 1178.81146 NaN NaN NaN NaN NaN NaN NaN 174.54 1 169.66 169.16 170.16 -4.8845 0 0 0 0.22588 1 34677 34677 1.4819 0.15237 1 26946 4679 17904 17910 26575 26575 0.22921166672722393 LKKRKLTKMK 10 Unmodified _LKKRKLTKMK_ 0 0 0 REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2485046386719 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 45.342 1 45.342 44.842 45.842 0 0 0 0 2.8426 1 8520 8520 0.84494 0 1 + 26947 13131 17905 17911 26576 26576 0.2172741643516929 LKKRKLTKMK 10 Unmodified _LKKRKLTKMK_ 0 0 0 REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25091552734375 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 42.945 1 40.294 39.794 40.794 -2.651 0 0 0 2.8426 1 7742 7742 0.13989 0.11369 1 + 26948 13131 17905 17911 26577 26577 0.2172741643516929 LKKRKLTKMK 10 Unmodified _LKKRKLTKMK_ 0 0 0 REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2475280761719 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 48.291 1 45.349 44.849 45.849 -2.9421 0 0 0 2.8426 1 8815 8815 0.26539 0 1 + 26949 13131 17905 17911 26578 26578 0.2172741643516929 LKKRKLTKMK 10 Unmodified _LKKRKLTKMK_ 0 0 0 REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2494201660156 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 48.648 1 45.649 45.149 46.149 -2.999 0 0 0 2.8426 1 8883 8883 0.26539 0.25943 1 + 26950 13131 17905 17911 26579 26579 0.2172741643516929 LKKRKLTKMK 10 Unmodified _LKKRKLTKMK_ 0 0 0 REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2515563964844 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 130.47 1 125.63 125.13 126.13 -4.8355 0 0 0 2.8426 1 25052 25052 0.0013812 0.0008168 1 + 26951 13131 17905 17911 26580 26580 0.2172741643516929 LKKRKLTKMK 10 Unmodified _LKKRKLTKMK_ 0 0 0 REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant REV__ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2481689453125 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 122.38 1 117.85 117.35 118.35 -4.5305 0 0 0 2.8426 1 23561 23561 0.043787 0.042406 1 + 26952 13131 17905 17911 26581 26581 0.2172741643516929 LKKTRIRVP 9 Unmodified _LKKTRIRVP_ 0 0 0 ENST00000354955.4_1_1:203320311-203320362:-|nuORF ENST00000354955.4_1_1:203320311-203320362:-|nuORF ENST00000354955.4_1_1:203320311-203320362:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 555.2835693359375 2 555.877125 1109.7397 0.29518 0.00016408 2.142 0.0011907 2.4372 0.0013548 556.3793933653202 115.02 0.1722 115.02 114.89 115.06 0 5 4 2 0 0 0 0.65257 1 22627 22627 0.073264 0 1 1697000 26953 8948 17906 17912 26582 26582 0.18921672038868564 LKKVLKKIVK 10 Unmodified _LKKVLKKIVK_ 0 0 0 ENSG00000055044|ENST00000264279|NOP58;ENST00000478941.1_1_2:203147084-203155055:+|nuORF;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF ENSG00000055044|ENST00000264279|NOP58 ENSG00000055044|ENST00000264279|NOP58 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 598.596923828125 2 598.944476 1195.8744 NaN NaN NaN NaN NaN NaN NaN 167.36 1 162.47 161.97 162.97 -4.8916 0 0 0 2.8426 1 32906 32906 0 0 1 26954 1271 17907 17913 26583 26583 0.2842973246076781 LKKVVFDL 8 Unmodified _LKKVVFDL_ 0 0 0 tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1 tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1 tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25360107421875 2 481.307678 960.600803 -0.17815 -8.5746E-05 0.52247 0.00025147 0.34432 0.00016572 481.30781683617835 56.389 0.59379 56.389 56.081 56.675 0 26 16 2 0 0 0 1.0147 1 10807 10807 2.3027 2.3027 1 1560600 26955 26409 17908 17914 26584 26584 0.1189270935069544 LKKWVTQPL 9 Unmodified _LKKWVTQPL_ 0 0 0 MSH3|p.N861Mfs*6|1|0.43|ENSG00000113318|chr5:80792766-80792766|A/-|frameshift_variant;MSH3|p.N1020Kfs*17|1|0.43|ENSG00000113318|chr5:80864864-80864865|-/A|frameshift_variant;MSH3|p.N1020Ifs*40|1|0.46|ENSG00000113318|chr5:80864865-80864865|A/-|frameshift_variant;ENSG00000113318|ENST00000265081|MSH3;MSH3|p.V745Ifs*28|1|0.05|ENSG00000113318|chr5:80768981-80768982|-/CATATTCGAAGTTTAT|frameshift_variant MSH3|p.N861Mfs*6|1|0.43|ENSG00000113318|chr5:80792766-80792766|A/-|frameshift_variant MSH3|p.N861Mfs*6|1|0.43|ENSG00000113318|chr5:80792766-80792766|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 556.845458984375 2 556.844959 1111.67537 NaN NaN NaN NaN NaN NaN NaN 174.32 1 169.43 168.93 169.93 -4.8916 0 0 0 0.23508 1 34699 34699 6.7232 1.9672 1 26956 2736 17909 17915 26585 26585 0.12399472162087477 LKLERATH 8 Unmodified _LKLERATH_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 484.2554626464844 2 484.287808 966.561064 NaN NaN NaN NaN NaN NaN NaN 158.53 1 153.73 153.23 154.23 -4.7952 0 0 0 0.23782 1 31525 31525 0.12286 0 1 26957 414 17910 17916 26586 26586 0.07644582399984756 LKLEVELSR 9 Unmodified _LKLEVELSR_ 0 0 0 REV__ENST00000579991.2_1_17:56166989-56167148:+|nuORF REV__ENST00000579991.2_1_17:56166989-56167148:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.781494140625 2 543.829506 1085.64446 0.70065 0.00038103 -0.69177 -0.00037621 0.0088749 4.8264E-06 543.8291237259812 100.64 0.56148 100.64 100.31 100.87 0 36 15 3 0 0 0 0.095704 2 19717 19714;19717 57.249 11.509 1 9212000 + 26958 23231 17911 17917 26587;26588 26588 0.10506274057183873 LKLEVELSR 9 Unmodified _LKLEVELSR_ 0 0 0 REV__ENST00000579991.2_1_17:56166989-56167148:+|nuORF REV__ENST00000579991.2_1_17:56166989-56167148:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7922973632812 2 543.829506 1085.64446 0.70065 0.00038103 -0.69177 -0.00037621 0.0088749 4.8264E-06 543.8291237259812 100.64 0.56148 100.64 100.31 100.87 0 36 15 3 0 0 0 0.23009 1 19761 19761 47.594 9.4188 1 9212000 + 26959 23231 17911 17917 26589 26589 0.10506274057183873 LKLEVELSR 9 Unmodified _LKLEVELSR_ 0 0 0 REV__ENST00000579991.2_1_17:56166989-56167148:+|nuORF REV__ENST00000579991.2_1_17:56166989-56167148:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7865600585938 2 543.829506 1085.64446 0.80134 0.00043579 -0.84286 -0.00045837 -0.041516 -2.2578E-05 543.8289810400602 104.35 0.77991 100.29 99.877 100.66 -4.0543 50 21 3 0 0 0 0.10537 1 20045 20045 37.075 0 1 6225900 + 26960 23231 17911 17917 26590 26590 0.10506274057183873 LKLFLITTR 9 Unmodified _LKLFLITTR_ 0 0 0 REV__nc|ENSG00000150551|Q8N2G4-4|LYPD1 REV__nc|ENSG00000150551|Q8N2G4-4|LYPD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 368.85296630859375 3 368.909498 1103.70667 0.076545 2.8238E-05 -0.21853 -8.0619E-05 -0.14199 -5.2381E-05 369.2439668210604 37.844 0.24171 35.479 35.392 35.634 -2.3652 9 6 2 0 0 0 0.64764 1 6728 6728 0.96228 0.96089 1 758380 + 26961 17034 17912 17918 26591 26591 0.15896045196154773 LKLFLITTR 9 Unmodified _LKLFLITTR_ 0 0 0 REV__nc|ENSG00000150551|Q8N2G4-4|LYPD1 REV__nc|ENSG00000150551|Q8N2G4-4|LYPD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 368.909498 1103.70667 -0.59515 -0.00021956 1.4496 0.00053477 0.85445 0.00031521 368.9099797517016 38.077 0.20486 35.609 35.438 35.643 -2.4688 0.12804 0.0013961 NaN 0.96228 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 713770 + 26962 17034 17912 17918 0.15896045196154773 LKLFLITTR 9 Unmodified _LKLFLITTR_ 0 0 0 REV__nc|ENSG00000150551|Q8N2G4-4|LYPD1 REV__nc|ENSG00000150551|Q8N2G4-4|LYPD1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 368.909498 1103.70667 0.076545 2.8238E-05 -0.21853 -8.0619E-05 -0.14199 -5.2381E-05 369.2439668210604 37.844 0.24171 35.479 35.392 35.634 -2.3652 -0.0018057 -0.00045006 NaN 0.96228 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 758380 + 26963 17034 17912 17918 0.15896045196154773 LKLFLITTR 9 Unmodified _LKLFLITTR_ 0 0 0 REV__nc|ENSG00000150551|Q8N2G4-4|LYPD1 REV__nc|ENSG00000150551|Q8N2G4-4|LYPD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 368.909498 1103.70667 -0.47537 -0.00017537 -0.020288 -7.4846E-06 -0.49566 -0.00018285 368.90942228428105 37.818 0.17047 35.48 35.398 35.568 -2.3375 -0.00034236 -0.00023066 NaN 0.96228 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 423790 + 26964 17034 17912 17918 0.15896045196154773 LKLFLKKKVV 10 Unmodified _LKLFLKKKVV_ 0 0 0 ENSG00000168564|ENST00000504169|CDKN2AIP ENSG00000168564|ENST00000504169|CDKN2AIP ENSG00000168564|ENST00000504169|CDKN2AIP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 608.3734741210938 2 608.431202 1214.84785 NaN NaN NaN NaN NaN NaN NaN 173.27 1 168.39 167.89 168.89 -4.881 0 0 0 0.22588 1 34435 34435 0.40072 0 1 26965 5921 17913 17919 26592 26592 0.2490204356945469 LKLILLIKK 9 Unmodified _LKLILLIKK_ 0 0 0 REV__tr|U7SRI4|U7SRI4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01614PE=4SV=1 REV__tr|U7SRI4|U7SRI4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01614PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.268798828125 2 541.407195 1080.79984 NaN NaN NaN NaN NaN NaN NaN 171.42 1 166.63 166.13 167.13 -4.7898 0 0 0 0.19626 1 34853 34853 0.0033805 0 1 + 26966 25032 17914 17920 26593 26593 0.2626696964941857 LKLILLLLF 9 Unmodified _LKLILLLLF_ 0 0 0 nc|ENSG00000138463|Q96SL1-2|SLC49A4;ENSG00000138463|ENST00000261038|SLC49A4;ENST00000477647.1_1_3:122514002-122598222:+|nuORF nc|ENSG00000138463|Q96SL1-2|SLC49A4 nc|ENSG00000138463|Q96SL1-2|SLC49A4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7731323242188 2 543.388471 1084.76239 0.33704 0.00018314 -2.1793 -0.0011842 -1.8423 -0.0010011 543.388009718214 139.06 0.13586 139.06 138.98 139.12 0 5 3 2 0 0 0 0.88442 1 27627 27627 0 0 1 2304100 26967 4175 17915 17921 26594 26594 0.22339878383786527 LKLKKVVKI 9 Unmodified _LKLKKVVKI_ 0 0 0 REV__ENST00000443754.1_1_9:67328347-67334199:-|nuORF REV__ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 534.9358520507812 2 534.896995 1067.77944 NaN NaN NaN NaN NaN NaN NaN 144.57 1 144.57 144.07 145.07 0 0 0 0 0.23508 1 28888 28888 0.52476 0 1 + 26968 21733 17916 17922 26595 26595 0.24825798989604664 LKLKLIKFL 9 Unmodified _LKLKLIKFL_ 0 0 0 ENSG00000135931|ENST00000611582|ARMC9;nc|ENSG00000135931|Q7Z3E5-2|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 558.4000244140625 2 558.39937 1114.78419 NaN NaN NaN NaN NaN NaN NaN 171.11 1 166.24 165.74 166.74 -4.873 0 0 0 0.19635 1 33899 33899 0 0 1 26969 3968 17917 17923 26596 26596 0.231386831323789 LKLLHRGA 8 Unmodified _LKLLHRGA_ 0 0 0 nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;PPP1R12A|p.N540Ifs*23|1|0.49|ENSG00000058272|chr12:79807262-79807262|T/-|frameshift_variant nc|ENSG00000058272|O14974-4|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 303.2069091796875 3 303.199383 906.57632 NaN NaN NaN NaN NaN NaN NaN 97.979 1 93.881 93.381 94.381 -4.0978 0 0 0 0.21486 1 19235 19235 0.40072 0 1 26970 1292 17918 17924 26597 26597 0.11929493987838669 LKLLHRGA 8 Unmodified _LKLLHRGA_ 0 0 0 nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;PPP1R12A|p.N540Ifs*23|1|0.49|ENSG00000058272|chr12:79807262-79807262|T/-|frameshift_variant nc|ENSG00000058272|O14974-4|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 303.2069091796875 3 303.199383 906.57632 NaN NaN NaN NaN NaN NaN NaN 101.97 1 97.652 97.152 98.152 -4.3208 0 0 0 0.21486 1 19520 19520 0.40072 0 1 26971 1292 17918 17924 26598 26598 0.11929493987838669 LKLLKHATY 9 Unmodified _LKLLKHATY_ 0 0 0 REV__tr|U7SXS1|U7SXS1_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00937PE=4SV=1 REV__tr|U7SXS1|U7SXS1_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00937PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7843017578125 2 543.837134 1085.65972 NaN NaN NaN NaN NaN NaN NaN 133.57 1 133.57 133.07 134.07 0 0 0 0 0.23508 1 26426 26426 7.2892 0.56607 1 + 26972 25220 17919 17925 26599 26599 0.12031185645037112 LKLLVRNIHVL 11 Unmodified _LKLLVRNIHVL_ 0 0 0 nc|ENSG00000157617|Q9Y426-2|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2;ENSG00000157617|ENST00000380486|C2CD2 nc|ENSG00000157617|Q9Y426-2|C2CD2 nc|ENSG00000157617|Q9Y426-2|C2CD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 659.611083984375 2 659.440089 1316.86563 NaN NaN NaN NaN NaN NaN NaN 165.97 1 165.97 165.47 166.47 0 0 0 0 0.2367 1 33749 33749 2.9952 1.8019 1 26973 5132 17920 17926 26600 26600 0.21986758824300523 LKLLYLWRR 9 Unmodified _LKLLYLWRR_ 0 0 0 REV__ENST00000260803.8_1_3:137893678-137893765:-|nuORF REV__ENST00000260803.8_1_3:137893678-137893765:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7594604492188 2 630.9006 1259.78665 NaN NaN NaN NaN NaN NaN NaN 146.93 1 142.25 141.75 142.75 -4.6868 0 0 0 0.1963 1 29148 29148 0.073264 0.029476 1 + 26974 20163 17921 17927 26601 26601 0.16714531590014303 LKLLYVLSF 9 Unmodified _LKLLYVLSF_ 0 0 0 ENST00000324142.4_1_1:233337898-233388268:-|nuORF ENST00000324142.4_1_1:233337898-233388268:-|nuORF ENST00000324142.4_1_1:233337898-233388268:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7909545898438 2 548.344261 1094.67397 0.28468 0.0001561 3.3195 0.0018202 3.6042 0.0019763 548.3449379241862 148.98 0.31828 144.27 144.05 144.36 -4.7095 9 8 2 0 0 0 0.84208 1 29599 29599 3.9444 0.94915 1 1187900 26975 8727 17922 17928 26602 26602 0.1304183807330901 LKLNLHKSL 9 Unmodified _LKLNLHKSL_ 0 0 0 REV__MROH8|p.F768Lfs*38|1|0.13|ENSG00000101353|chr20:37120510-37120510|A/-|frameshift_variant REV__MROH8|p.F768Lfs*38|1|0.13|ENSG00000101353|chr20:37120510-37120510|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2764892578125 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 114.51 1 110.2 109.7 110.7 -4.3136 0 0 0 0.22962 1 22052 22052 14.838 0 1 + 26976 14783 17923 17929 26603 26603 0.1408658801931324 LKLPAKLVLF 10 Unmodified _LKLPAKLVLF_ 0 0 0 ENST00000380722.2_1_14:85996060-85996315:-|nuORF ENST00000380722.2_1_14:85996060-85996315:-|nuORF ENST00000380722.2_1_14:85996060-85996315:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 380.9087829589844 3 381.261761 1140.76345 NaN NaN NaN NaN NaN NaN NaN 10.63 1 10.63 10.13 11.13 0 0 0 0 0.22588 1 1341 1341 0 0 1 26977 9320 17924 17930 26604 26604 0.19870092752671553 LKLRHWQWWRL 11 Unmodified _LKLRHWQWWRL_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2679443359375 3 541.3124 1620.91537 NaN NaN NaN NaN NaN NaN NaN 165.39 1 160.41 159.91 160.91 -4.9811 0 0 0 0.22632 1 32322 32322 0.094841 0.068635 1 26978 2300 17925 17931 26605 26605 0.12974886552956377 LKLSEELSGGR 11 Unmodified _LKLSEELSGGR_ 0 0 0 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 397.1956481933594 3 396.890944 1187.651 -0.20209 -8.0206E-05 0.0051778 2.055E-06 -0.19691 -7.8151E-05 396.89092867312087 72.34 0.62296 68.801 68.501 69.124 -3.5385 41 17 3 0 0 0 0.96173 1 13694 13694 1.0136 1.0136 1 5804000 26979 2823 17926 17932 26606 26606 0.06468167217894916 LKLSEELSGGR 11 Unmodified _LKLSEELSGGR_ 0 0 0 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 396.890944 1187.651 -0.35344 -0.00014028 0.053752 2.1334E-05 -0.29969 -0.00011894 396.89096801961244 68.876 0.45956 68.876 68.648 69.108 0 0.090619 0.00015611 NaN 1.9275 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3167200 26980 2823 17926 17932 0.06468167217894916 LKLSEELSGGR 11 Unmodified _LKLSEELSGGR_ 0 0 0 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 396.890944 1187.651 -0.33155 -0.00013159 0.16365 6.495E-05 -0.1679 -6.6639E-05 396.8909755073025 72.024 0.49531 68.713 68.458 68.954 -3.3107 -0.072597 0.00028696 NaN 1.9275 36 13 4 NaN NaN NaN NaN 0 NaN NaN 0 5291000 26981 2823 17926 17932 0.06468167217894916 LKLSEELSGGR 11 Unmodified _LKLSEELSGGR_ 0 0 0 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 396.890944 1187.651 0.26865 0.00010663 -0.49516 -0.00019652 -0.22651 -8.9898E-05 396.890750051642 72.379 0.54281 68.752 68.442 68.985 -3.6275 -0.033868 -0.00049746 NaN 1.9275 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4479700 26982 2823 17926 17932 0.06468167217894916 LKLVPLGVFT 10 Unmodified _LKLVPLGVFT_ 0 0 0 LINGO2|p.S535Pfs*61|1|0.18|ENSG00000174482|chr9:27949069-27949069|A/-|frameshift_variant;LINGO2|p.F564Lfs*32|1|0.12|ENSG00000174482|chr9:27948980-27948980|A/-|frameshift_variant;LINGO2|p.M605*|1|0.27|ENSG00000174482|chr9:27948859-27948859|T/-|frameshift_variant;ENSG00000174482|ENST00000698399|LINGO2 LINGO2|p.S535Pfs*61|1|0.18|ENSG00000174482|chr9:27949069-27949069|A/-|frameshift_variant LINGO2|p.S535Pfs*61|1|0.18|ENSG00000174482|chr9:27949069-27949069|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.85205078125 2 543.84971 1085.68487 NaN NaN NaN NaN NaN NaN NaN 11.242 1 10.338 9.8379 10.838 -0.90401 0 0 0 0.22588 1 1474 1474 0.40072 0 1 26983 6351 17927 17933 26607 26607 0.14545240447637298 LKLYAGAI 8 Unmodified _LKLYAGAI_ 0 0 0 ENST00000401030.4_1_1:87346375-87352853:-|nuORF ENST00000401030.4_1_1:87346375-87352853:-|nuORF ENST00000401030.4_1_1:87346375-87352853:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2440490722656 2 424.765646 847.516739 -0.16521 -7.0175E-05 0.43752 0.00018585 0.27231 0.00011567 424.76583096831786 130.8 0.70351 126.17 125.72 126.42 -4.6359 29 19 2 0 0 0 0.89646 1 25705 25705 0.62683 0 1 1988300 26984 9510 17928 17934 26608 26608 0.08688178253783008 LKLYQDGSSM 10 Unmodified _LKLYQDGSSM_ 0 0 0 REV__ENST00000206249.7_1_6:152128699-152128993:+|nuORF REV__ENST00000206249.7_1_6:152128699-152128993:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2093505859375 3 381.190113 1140.54851 NaN NaN NaN NaN NaN NaN NaN 68.861 1 65.325 64.825 65.825 -3.5362 0 0 0 0.22588 1 12953 12953 3.3196 0.58445 1 + 26985 19995 17929 17935 26609 26609 -0.01614241845209108 LKMVKKLF 8 Unmodified _LKMVKKLF_ 0 0 0 ENSG00000176635|ENST00000336726|HORMAD2 ENSG00000176635|ENST00000336726|HORMAD2 ENSG00000176635|ENST00000336726|HORMAD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.220458984375 3 336.220908 1005.64089 NaN NaN NaN NaN NaN NaN NaN 56.638 1 53.744 53.244 54.244 -2.8944 0 0 0 0.21486 1 10857 10857 1.6526 0 1 26986 6478 17930 17936 26610 26610 0.13829932749615637 LKNEFLFRL 9 Unmodified _LKNEFLFRL_ 0 0 0 REV__nc|ENSG00000130177|Q13042-4|CDC16 REV__nc|ENSG00000130177|Q13042-4|CDC16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2735595703125 2 590.347866 1178.68118 NaN NaN NaN NaN NaN NaN NaN 150.16 1 150.16 149.66 150.66 0 0 0 0 0.23508 1 30064 30064 10.824 0.024421 1 + 26987 15989 17931 17937 26611 26611 0.09898570673749418 LKNGAQTYKK 10 Unmodified _LKNGAQTYKK_ 0 0 0 REV__ENST00000565298.5_1_16:1560947-1574065:-|nuORF REV__ENST00000565298.5_1_16:1560947-1574065:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3247680664062 2 575.83258 1149.65061 0.38238 0.00022019 -2.6286 -0.0015136 -2.2462 -0.0012934 576.3312236041565 152.47 0.17429 147.29 147.23 147.41 -5.1759 5 4 2 0 0 0 0.69696 1 29552 29552 11.495 2.1116 1 1147500 + 26988 19093 17932 17938 26612 26612 0.08176792288691104 LKNLTYEV 8 Unmodified _LKNLTYEV_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2751770019531 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 134.45 1 134.45 133.95 134.95 0 0 0 0 0.21486 1 26616 26616 11.64 0 1 + 26989 16401 17933 17939 26613 26613 0.048469382116991255 LKPFLYQA 8 Unmodified _LKPFLYQA_ 0 0 0 REV__nc|ENSG00000112033|Q03181-4|PPARD REV__nc|ENSG00000112033|Q03181-4|PPARD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.263427734375 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 34.647 1 32.329 31.829 32.829 -2.3175 0 0 0 0.21486 1 6366 6366 9.3474 2.0582 1 + 26990 15274 17934 17940 26614 26614 0.06371849799552365 LKPFLYQA 8 Unmodified _LKPFLYQA_ 0 0 0 REV__nc|ENSG00000112033|Q03181-4|PPARD REV__nc|ENSG00000112033|Q03181-4|PPARD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2645568847656 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 34.614 1 32.362 31.862 32.862 -2.2527 0 0 0 0.21486 1 6075 6075 9.3474 0 1 + 26991 15274 17934 17940 26615 26615 0.06371849799552365 LKPIGKIKSYK 11 Unmodified _LKPIGKIKSYK_ 0 0 0 REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant REV__TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 637.9127197265625 2 637.913373 1273.81219 NaN NaN NaN NaN NaN NaN NaN 177.89 1 173.1 172.6 173.6 -4.7898 0 0 0 0.22632 1 36392 36392 0.026206 0 1 + 26992 14358 17935 17941 26616 26616 0.1862396132178219 LKPIKIVLPPV 11 Unmodified _LKPIKIVLPPV_ 0 0 0 NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant;ENSG00000179299|ENST00000381782|NSUN7 NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 608.9241333007812 2 608.923209 1215.83187 NaN NaN NaN NaN NaN NaN NaN 168.44 1 163.5 163 164 -4.948 0 0 0 0.23698 1 33208 33208 0.26902 0.033176 1 26993 6622 17936 17942 26617 26617 0.23258337332549672 LKPNLGCSKY 10 Unmodified _LKPNLGCSKY_ 0 0 0 REV__nc|ENSG00000085224|P46100-2|ATRX REV__nc|ENSG00000085224|P46100-2|ATRX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2049255371094 3 374.870715 1121.59032 -0.51867 -0.00019443 0.23428 8.7823E-05 -0.2844 -0.00010661 374.87070747653564 39.428 0.56678 36.879 36.606 37.172 -2.5491 18 15 2 0 0 0 0.75765 1 7319 7319 3.3196 0.3244 1 616200 + 26994 14471 17937 17943 26618 26618 0.0343835863395725 LKQKHKKR 8 Unmodified _LKQKHKKR_ 0 0 0 MLLT6|p.K747Rfs*45|1|0.22|ENSG00000275023|chr17:38720452-38720452|A/-|frameshift_variant;ENSG00000275023|ENST00000621332|MLLT6;MLLT6|p.S261Afs*48|1|0.24|ENSG00000275023|chr17:38712745-38712745|C/-|frameshift_variant;MLLT6|p.P452Lfs*12|1|0.4|ENSG00000275023|chr17:38716682-38716682|C/-|frameshift_variant MLLT6|p.K747Rfs*45|1|0.22|ENSG00000275023|chr17:38720452-38720452|A/-|frameshift_variant MLLT6|p.K747Rfs*45|1|0.22|ENSG00000275023|chr17:38720452-38720452|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.0867004394531 3 355.90497 1064.69308 -0.70182 -0.00024978 0.64686 0.00023022 -0.054965 -1.9562E-05 355.90519519315126 55.333 0.79073 52.195 51.766 52.556 -3.1377 33 22 2 0 0 0 1.0282 1 10199 10199 0 0 1 4042400 26995 8021 17938 17944 26619 26619 0.1633223220758282 LKRCENQA 8 Unmodified _LKRCENQA_ 0 0 0 REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2478332519531 2 481.247826 960.481099 NaN NaN NaN NaN NaN NaN NaN 39.503 1 39.503 39.003 40.003 0 0 0 0 0.16809 1 7335 7335 1.7423 1.6145 1 + 26996 15577 17939 17945 26620 26620 -0.0007222726551390224 LKRCENQA 8 Unmodified _LKRCENQA_ 0 0 0 REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23748779296875 2 481.247826 960.481099 NaN NaN NaN NaN NaN NaN NaN 39.643 1 39.643 39.143 40.143 0 0 0 0 0.22628 1 7362 7362 3.5871 3.2075 1 + 26997 15577 17939 17945 26621 26621 -0.0007222726551390224 LKRFLKKLKP 10 Unmodified _LKRFLKKLKP_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 635.8231811523438 2 635.939725 1269.8649 0.41481 0.0002638 -0.76788 -0.00048833 -0.35307 -0.00022453 635.9377882059407 166.21 0.23718 166.21 166.1 166.34 0 9 6 2 0 0 0 1.1347 1 33827 33827 0.13989 0.13989 1 21433000 + 26998 14067 17940 17946 26622 26622 0.24075964175244735 LKRFLRWYFLQ 11 Unmodified _LKRFLRWYFLQ_ 0 0 0 REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4112548828125 2 785.456271 1568.89799 NaN NaN NaN NaN NaN NaN NaN 72.871 1 69.244 68.744 69.744 -3.6275 0 0 0 0.23698 1 13767 13767 0.30703 0 1 + 26999 22440 17941 17947 26623 26623 0.13629546227298306 LKRFLRWYFLQ 11 Unmodified _LKRFLRWYFLQ_ 0 0 0 REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4068603515625 2 785.456271 1568.89799 NaN NaN NaN NaN NaN NaN NaN 73.4 1 69.806 69.306 70.306 -3.594 0 0 0 0.23698 1 13932 13932 0.30703 0 1 + 27000 22440 17941 17947 26624 26624 0.13629546227298306 LKRKGLVKRF 10 Unmodified _LKRKGLVKRF_ 0 0 0 BAG1|p.K314Rfs*6|1|0.31|ENSG00000107262|chr9:33255872-33255872|T/-|frameshift_variant BAG1|p.K314Rfs*6|1|0.31|ENSG00000107262|chr9:33255872-33255872|T/-|frameshift_variant BAG1|p.K314Rfs*6|1|0.31|ENSG00000107262|chr9:33255872-33255872|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7808837890625 2 622.919324 1243.8241 0.35683 0.00022228 -1.8595 -0.0011583 -1.5027 -0.00093607 623.419562533352 148.15 0.17487 142.99 142.87 143.04 -5.1557 5 4 2 0 0 0 0.91149 1 28666 28666 0.35063 0 1 1283200 27001 292 17942 17948 26625 26625 0.2119362285563966 LKRKKRRRQKS 11 Unmodified _LKRKKRRRQKS_ 0 0 0 BCORL1|p.I1392Sfs*58|1|0.14|ENSG00000085185|chrX:130028726-130028726|G/-|frameshift_variant;nc|ENSG00000085185|Q5H9F3-1|BCORL1;BCORL1|p.P1681Qfs*20|7|0.43|ENSG00000085185|chrX:130056036-130056036|C/-|frameshift_variant;ENSG00000085185|ENST00000540052|BCORL1 BCORL1|p.I1392Sfs*58|1|0.14|ENSG00000085185|chrX:130028726-130028726|G/-|frameshift_variant BCORL1|p.I1392Sfs*58|1|0.14|ENSG00000085185|chrX:130028726-130028726|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3910522460938 2 742.492042 1482.96953 NaN NaN NaN NaN NaN NaN NaN 164.74 1 164.74 164.24 165.24 0 0 0 0 0.23698 1 33347 33347 0.30703 0.30703 1 27002 312 17943 17949 26626 26626 0.2473647870451714 LKRKRKKKK 9 Unmodified _LKRKRKKKK_ 0 0 0 REV__ENST00000437916.2_1_2:45148822-45149500:-|nuORF REV__ENST00000437916.2_1_2:45148822-45149500:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 606.8618774414062 2 606.940591 1211.86663 NaN NaN NaN NaN NaN NaN NaN 174.24 1 169.45 168.95 169.95 -4.7898 0 0 0 0.23508 1 35587 35587 0.45834 0 1 + 27003 21681 17944 17950 26627 26627 0.2691701798385111 LKRLNRRLIK 10 Unmodified _LKRLNRRLIK_ 0 0 0 REV__MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant REV__MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2279357910156 3 437.301612 1308.88301 NaN NaN NaN NaN NaN NaN NaN 117.26 1 112.68 112.18 113.18 -4.5815 0 0 0 0.22588 1 22503 22503 1.7423 0.63252 1 + 27004 23832 17945 17951 26628 26628 0.24092099149970636 LKRLVKPGPPQ 11 Unmodified _LKRLVKPGPPQ_ 0 0 0 REV__SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant REV__SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 616.896240234375 2 616.895515 1231.77648 NaN NaN NaN NaN NaN NaN NaN 167.73 1 162.84 162.34 163.34 -4.8916 0 0 0 0.23379 1 33023 33023 5.2969 0 1 + 27005 14413 17946 17952 26629 26629 0.16985923864785946 LKRPNQPPP 9 Unmodified _LKRPNQPPP_ 0 0 0 REV__SLITRK6|p.S480Ffs*7|1|0.21|ENSG00000184564|chr13:85795070-85795071|-/A|frameshift_variant REV__SLITRK6|p.S480Ffs*7|1|0.21|ENSG00000184564|chr13:85795070-85795071|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6948852539062 2 523.808908 1045.60326 -0.52374 -0.00027434 -1.6967 -0.00088875 -2.2204 -0.0011631 523.8081145970006 49.351 0.27706 46.352 46.136 46.413 -2.999 11 7 2 0 0 0 0.84208 1 8981 8981 11.64 9.0628 1 825300 + 27006 18904 17947 17953 26630 26630 0.08228557808365622 LKRPRTQG 8 Unmodified _LKRPRTQG_ 0 0 0 ENST00000466480.1_1_1:114448336-114454776:+|nuORF;DCLRE1B|p.K420Rfs*3|1|0.23|ENSG00000118655|chr1:113911848-113911848|A/-|frameshift_variant;ENSG00000118655|ENST00000650450|DCLRE1B ENST00000466480.1_1_1:114448336-114454776:+|nuORF ENST00000466480.1_1_1:114448336-114454776:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7339782714844 2 478.293425 954.572297 NaN NaN NaN NaN NaN NaN NaN 107.41 1 103.28 102.78 103.78 -4.135 0 0 0 0.23538 1 20659 20659 0.62683 0 1 27007 792 17948 17954 26631 26631 0.09319404494135597 LKRRIRKIP 9 Unmodified _LKRRIRKIP_ 0 0 0 ENSG00000119616|ENST00000341162|FCF1 ENSG00000119616|ENST00000341162|FCF1 ENSG00000119616|ENST00000341162|FCF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2540893554688 2 590.411666 1178.80878 NaN NaN NaN NaN NaN NaN NaN 156.01 1 156.01 155.51 156.51 0 0 0 0 0.23508 1 31285 31285 0.52476 0 1 27008 3089 17949 17955 26632 26632 0.22652756058437262 LKRRKKGFVSR 11 Unmodified _LKRRKKGFVSR_ 0 0 0 REV__ENSG00000134899|ENST00000652225|ERCC5 REV__ENSG00000134899|ENST00000652225|ERCC5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 688.1604614257812 2 687.943862 1373.87317 NaN NaN NaN NaN NaN NaN NaN 174.8 1 169.91 169.41 170.41 -4.8916 0 0 0 0.23519 1 34811 34811 4.1895 2.9962 1 + 27009 16235 17950 17956 26633 26633 0.20118911144572849 LKRRVFYAV 9 Unmodified _LKRRVFYAV_ 0 0 0 tr|U7T5Q7|U7T5Q7_FUSNUCelldivisiontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00049PE=4SV=1 tr|U7T5Q7|U7T5Q7_FUSNUCelldivisiontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00049PE=4SV=1 tr|U7T5Q7|U7T5Q7_FUSNUCelldivisiontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00049PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.319091796875 2 576.356025 1150.6975 NaN NaN NaN NaN NaN NaN NaN 164.67 1 159.61 159.11 160.11 -5.0648 0 0 0 0.19624 1 32128 32128 0.073264 0 1 27010 26473 17951 17957 26634 26634 0.1281769663050909 LKRRVPPP 8 Unmodified _LKRRVPPP_ 0 0 0 REV__ENSG00000125430|ENST00000360954|HS3ST3B1 REV__ENSG00000125430|ENST00000360954|HS3ST3B1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7654724121094 2 481.816536 961.618519 NaN NaN NaN NaN NaN NaN NaN 58.421 1 58.421 57.921 58.921 0 0 0 0 0.21486 1 11180 11180 5.7604 0.52976 1 + 27011 15814 17952 17958 26635 26635 0.1361746939621753 LKRVFKRKK 9 Unmodified _LKRVFKRKK_ 0 0 0 ENSG00000203760|ENST00000368328|CENPW;nc|ENSG00000203760|Q5EE01-2|CENPW ENSG00000203760|ENST00000368328|CENPW ENSG00000203760|ENST00000368328|CENPW MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2929077148438 2 601.914042 1201.81353 0.34823 0.00020961 -1.1924 -0.0007177 -0.84413 -0.0005081 601.91524487458 141.09 0.17491 136.23 136.15 136.32 -4.8677 6 4 2 0 0 0 0.88449 1 27237 27237 0 0 1 2755700 27012 7547 17953 17959 26636 26636 0.22069640201198126 LKRVRPVCLSC 11 Unmodified _LKRVRPVCLSC_ 0 0 0 REV__nc|ENSG00000164125|Q6UWH4-3|GASK1B REV__nc|ENSG00000164125|Q6UWH4-3|GASK1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2445068359375 3 425.245899 1272.71587 NaN NaN NaN NaN NaN NaN NaN 90.507 1 86.729 86.229 87.229 -3.7779 0 0 0 0.22632 1 17321 17321 0.026206 0 1 + 27013 17651 17954 17960 26637 26637 0.09041747218566343 LKRWTWRTIFY 11 Unmodified _LKRWTWRTIFY_ 0 0 0 ENST00000437348.5_1_11:31115730-31149186:-|nuORF ENST00000437348.5_1_11:31115730-31149186:-|nuORF ENST00000437348.5_1_11:31115730-31149186:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.396728515625 2 785.438078 1568.8616 NaN NaN NaN NaN NaN NaN NaN 123.08 1 123.08 122.58 123.58 0 0 0 0 0.22632 1 24258 24258 0.026206 0.025642 1 27014 9850 17955 17961 26638 26638 0.09992669330563331 LKRWTWRTIFY 11 Unmodified _LKRWTWRTIFY_ 0 0 0 ENST00000437348.5_1_11:31115730-31149186:-|nuORF ENST00000437348.5_1_11:31115730-31149186:-|nuORF ENST00000437348.5_1_11:31115730-31149186:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3973388671875 2 785.438078 1568.8616 NaN NaN NaN NaN NaN NaN NaN 156.36 1 151.07 150.57 151.57 -5.2854 0 0 0 0.23698 1 30333 30333 1.3295 0.13619 1 27015 9850 17955 17961 26639 26639 0.09992669330563331 LKRYLLKRL 9 Unmodified _LKRYLLKRL_ 0 0 0 ENSG00000172901|ENST00000357872|LVRN ENSG00000172901|ENST00000357872|LVRN ENSG00000172901|ENST00000357872|LVRN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2728881835938 2 601.908425 1201.8023 1.0417 0.00062703 2.9371 0.0017678 3.9788 0.0023949 602.4095997341058 138.39 0.17365 133.75 133.64 133.81 -4.6413 6 4 2 0 0 0 0.88312 1 27300 27300 0.45834 0 1 2210800 27016 6250 17956 17962 26640 26640 0.20946818107063336 LKSKSKTQ 8 Unmodified _LKSKSKTQ_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2388610839844 2 460.282192 918.549831 NaN NaN NaN NaN NaN NaN NaN 63.468 1 63.468 62.968 63.968 0 0 0 0 0.21486 1 12204 12204 12.532 0 1 27017 1180 17957 17963 26641 26641 0.08729760305857326 LKTLFERTKA 10 Unmodified _LKTLFERTKA_ 0 0 0 REV__ENST00000547187.5_2_12:50135837-50138293:+|nuORF REV__ENST00000547187.5_2_12:50135837-50138293:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 603.8651123046875 2 603.86388 1205.71321 NaN NaN NaN NaN NaN NaN NaN 177.9 1 172.99 172.49 173.49 -4.9088 0 0 0 2.8426 1 35485 35485 1.9064 1.8425 1 + 27018 22904 17958 17964 26642 26642 0.11857938356888553 LKTVSATTT 9 Unmodified _LKTVSATTT_ 0 0 0 REV__CMYA5|p.K1823Rfs*17|2|0.34|ENSG00000164309|chr5:79734227-79734227|A/-|frameshift_variant REV__CMYA5|p.K1823Rfs*17|2|0.34|ENSG00000164309|chr5:79734227-79734227|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.7930603027344 2 461.266207 920.517862 0.20851 9.6176E-05 -1.081 -0.00049861 -0.87245 -0.00040243 461.26565245284525 149.54 0.61079 149.54 149.23 149.84 0 25 16 2 0 0 0 0.62649 1 29943 29943 0.073264 0 1 2438300 + 27019 13455 17959 17965 26643 26643 0.05442347832024552 LKVEAGYKGL 10 Unmodified _LKVEAGYKGL_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2164306640625 3 359.881608 1076.623 0.13852 4.9851E-05 -0.011302 -4.0675E-06 0.12722 4.5784E-05 359.8815567391823 95.684 0.58128 91.493 91.173 91.754 -4.1911 30 16 2 0 0 0 0.75099 1 18221 18221 5.4027 0.5057 1 3301800 + 27020 16194 17960 17966 26644 26644 0.08774889028472899 LKVHTTEK 8 Unmodified _LKVHTTEK_ 0 0 0 ENSG00000204947|ENST00000378061|ZNF425 ENSG00000204947|ENST00000378061|ZNF425 ENSG00000204947|ENST00000378061|ZNF425 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73504638671875 2 478.282192 954.549831 NaN NaN NaN NaN NaN NaN NaN 117.85 1 113.24 112.74 113.74 -4.6106 0 0 0 0.23487 1 22616 22616 0.12286 0 1 27021 7622 17961 17967 26645 26645 0.07073760305831911 LKVKRVFR 8 Unmodified _LKVKRVFR_ 0 0 0 ENSG00000166669|ENST00000562102|ATF7IP2 ENSG00000166669|ENST00000562102|ATF7IP2 ENSG00000166669|ENST00000562102|ATF7IP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6805419921875 2 523.353286 1044.69202 0.18684 9.7783E-05 -1.6239 -0.00084986 -1.437 -0.00075208 523.8539280468949 132.87 0.10782 132.87 132.79 132.9 0 4 2 2 0 0 0 1.0274 1 26280 26280 0.52476 0 1 1675800 27022 5739 17962 17968 26646 26646 0.17146017838695116 LKVNLVVM 8 Unmodified _LKVNLVVM_ 0 0 0 ENSG00000076826|ENST00000160298|CAMSAP3;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;CAMSAP3|p.R336Gfs*42|2|0.21|ENSG00000076826|chr19:7610883-7610883|C/-|frameshift_variant;CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant;CAMSAP3|p.V883Gfs*10|1|0.45|ENSG00000076826|chr19:7613137-7613138|-/G|frameshift_variant;CAMSAP3|p.E835Rfs*154|1|0.18|ENSG00000076826|chr19:7612990-7612990|C/-|frameshift_variant ENSG00000076826|ENST00000160298|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2391662597656 2 458.288431 914.562309 NaN NaN NaN NaN NaN NaN NaN 94.82 1 90.77 90.27 91.27 -4.0496 0 0 0 0.21486 1 18583 18583 5.2307 0 1 27023 1545 17963 17969 26647 26647 0.10161080444527215 LKVPGNRRGGP 11 Unmodified _LKVPGNRRGGP_ 0 0 0 REV__ENSG00000108854|ENST00000262435|SMURF2 REV__ENSG00000108854|ENST00000262435|SMURF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3209838867188 2 575.843813 1149.67307 0.3987 0.00022959 -1.1065 -0.00063718 -0.70781 -0.00040759 575.8430280591883 154.83 2.5682 149.58 147.54 150.11 -5.2527 156 72 3 0 0 0 0.80681 1 29698 29698 2.7352 2.7352 1 6641300 + 27024 15144 17964 17970 26648 26648 0.10422436476983421 LKVQRRKLY 9 Unmodified _LKVQRRKLY_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2852172851562 2 602.387857 1202.76116 NaN NaN NaN NaN NaN NaN NaN 132.81 1 128.17 127.67 128.67 -4.6399 0 0 0 0.23508 1 26183 26183 2.0598 0 1 + 27025 24099 17965 17971 26649 26649 0.16789057067603608 LKVQRRKLY 9 Unmodified _LKVQRRKLY_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.279052734375 2 602.387857 1202.76116 0.4775 0.00028764 -3.7293 -0.0022465 -3.2518 -0.0019588 602.3849942294519 149.9 0.17279 144.7 144.61 144.78 -5.1994 5 4 2 0 0 0 0.87888 1 29044 29044 4.756 0 1 1161400 + 27026 24099 17965 17971 26650 26650 0.16789057067603608 LKVRCIKVQ 9 Unmodified _LKVRCIKVQ_ 0 0 0 nc|ENSG00000127249|Q4VNC1-3|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;ENSG00000127249|ENST00000342695|ATP13A4 nc|ENSG00000127249|Q4VNC1-3|ATP13A4 nc|ENSG00000127249|Q4VNC1-3|ATP13A4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7838745117188 2 543.844436 1085.67432 NaN NaN NaN NaN NaN NaN NaN 158.5 1 153.71 153.21 154.21 -4.7952 0 0 0 0.19679 1 31520 31520 1.2148 0 1 27027 3468 17966 17972 26651 26651 0.1349093452154193 LKVRREYRRFF 11 Unmodified _LKVRREYRRFF_ 0 0 0 MYO1B|p.K859R|1|0.1|ENSG00000128641|chr2:191408134-191408134|A/G|missense_variant MYO1B|p.K859R|1|0.1|ENSG00000128641|chr2:191408134-191408134|A/G|missense_variant MYO1B|p.K859R|1|0.1|ENSG00000128641|chr2:191408134-191408134|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6871337890625 3 523.975676 1568.9052 NaN NaN NaN NaN NaN NaN NaN 78.388 1 78.388 77.888 78.888 0 0 0 0 0.22632 1 15256 15256 0.026206 0 1 27028 12188 17967 17973 26652 26652 0.1435027882769191 LKVRREYRRFF 11 Unmodified _LKVRREYRRFF_ 0 0 0 MYO1B|p.K859R|1|0.1|ENSG00000128641|chr2:191408134-191408134|A/G|missense_variant MYO1B|p.K859R|1|0.1|ENSG00000128641|chr2:191408134-191408134|A/G|missense_variant MYO1B|p.K859R|1|0.1|ENSG00000128641|chr2:191408134-191408134|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6871337890625 3 523.975676 1568.9052 NaN NaN NaN NaN NaN NaN NaN 78.403 1 78.403 77.903 78.903 0 0 0 0 0.23698 1 15258 15258 0.36667 0.27183 1 27029 12188 17967 17973 26653 26653 0.1435027882769191 LKVVGFCRGT 10 Unmodified _LKVVGFCRGT_ 0 0 0 ENST00000463683.1_1_2:219894468-219900288:-|nuORF ENST00000463683.1_1_2:219894468-219900288:-|nuORF ENST00000463683.1_1_2:219894468-219900288:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2047424316406 3 360.539188 1078.59573 -0.3035 -0.00010942 0.066936 2.4133E-05 -0.23656 -8.5289E-05 360.53924382785084 17.723 0.21432 17.723 17.589 17.803 0 8 5 2 0 0 0 0.91149 1 2806 2806 3.3196 1.0369 1 480090 27030 10102 17968 17974 26654 26654 0.05958082216443472 LKWLHFTLCHW 11 Unmodified _LKWLHFTLCHW_ 0 0 0 REV__ENST00000557385.1_1_X:119384768-119386573:+|nuORF REV__ENST00000557385.1_1_X:119384768-119386573:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3876342773438 2 742.387 1482.75945 NaN NaN NaN NaN NaN NaN NaN 142.53 1 142.53 142.03 143.03 0 0 0 0 0.2367 1 28415 28415 2.9952 0.26005 1 + 27031 23010 17969 17975 26655 26655 0.037376799873300115 LKWMKRRNRVP 11 Unmodified _LKWMKRRNRVP_ 0 0 0 REV__ENST00000374206.3_1_9:116029682-116034747:-|nuORF REV__ENST00000374206.3_1_9:116029682-116034747:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3956909179688 2 742.443172 1482.87179 NaN NaN NaN NaN NaN NaN NaN 74.341 1 70.977 70.477 71.477 -3.3643 0 0 0 0.22632 1 14502 14502 0.50596 0.50539 1 + 27032 21053 17970 17976 26656 26656 0.14966953784164616 LKWRWRWQQTQ 11 Unmodified _LKWRWRWQQTQ_ 0 0 0 OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 404.3091125488281 4 404.720567 1614.85316 -0.20404 -8.2578E-05 1.0612 0.0004295 0.85719 0.00034692 404.7210553830923 92.528 0.76715 88.603 88.232 88.999 -3.9251 83 21 5 0 0 0 0.96227 1 18062 18062 0.08335 0 1 25800000 27033 12743 17971 17977 26657 26657 0.07033115413946689 LKWRWRWQQTQ 11 Unmodified _LKWRWRWQQTQ_ 0 0 0 OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 404.720567 1614.85316 -0.11954 -4.8381E-05 0.88016 0.00035622 0.76062 0.00030784 404.7210328034438 88.691 0.67213 88.691 88.327 88.999 0 0.12716 -6.5283E-05 NaN 0.08335 68 18 5 NaN NaN NaN NaN 0 NaN NaN 0 13871000 27034 12743 17971 17977 0.07033115413946689 LKWRWRWQQTQ 11 Unmodified _LKWRWRWQQTQ_ 0 0 0 OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 404.720567 1614.85316 0.2443 9.8874E-05 0.6391 0.00025866 0.8834 0.00035753 404.7208990246173 92.625 0.76796 88.481 88.106 88.874 -4.1435 -0.082983 -0.00045554 NaN 0.08335 78 21 5 NaN NaN NaN NaN 0 NaN NaN 0 15837000 27035 12743 17971 17977 0.07033115413946689 LKWRWRWQQTQ 11 Unmodified _LKWRWRWQQTQ_ 0 0 0 OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 404.720567 1614.85316 -0.38644 -0.0001564 1.2434 0.00050321 0.85691 0.00034681 404.7211271200687 92.29 0.81079 88.481 88.14 88.951 -3.8083 -0.082843 0.00052268 NaN 0.08335 81 23 5 NaN NaN NaN NaN 0 NaN NaN 0 15337000 27036 12743 17971 17977 0.07033115413946689 LKWWKWLRQKR 11 Unmodified _LKWWKWLRQKR_ 0 0 0 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7764892578125 3 543.32805 1626.96232 0.34829 0.00018924 1.2373 0.00067225 1.5856 0.00086149 543.3281791376163 152.26 0.17952 147.51 147.42 147.6 -4.7523 7 4 2 0 0 0 0.66298 1 30268 30268 0 0 1 816030 + 27037 13415 17972 17978 26658 26658 0.17391746104067352 LKWWKWLRQKR 11 Unmodified _LKWWKWLRQKR_ 0 0 0 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 543.32805 1626.96232 0.34829 0.00018924 1.2373 0.00067225 1.5856 0.00086149 543.3281791376163 152.26 0.17952 147.51 147.42 147.6 -4.7523 0 0 NaN 0 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 816030 + 27038 13415 17972 17978 0.17391746104067352 LKWWQWWIWWW 11 Unmodified _LKWWQWWIWWW_ 0 0 0 REV__chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.29541015625 3 601.969751 1802.88742 0.39983 0.00024068 1.3944 0.00083939 1.7942 0.0010801 602.3049736172624 165.24 0.10297 165.24 165.19 165.29 0 4 2 2 0 0 0 0.66313 3 33501 33501;33503;33517 0.08335 0.08335 1 14985000 + 27039 13414 17973 17979 26659;26660;26661 26659 0.0180956357287414 LKWWQWWIWWW 11 Unmodified _LKWWQWWIWWW_ 0 0 0 REV__chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.294189453125 3 601.969751 1802.88742 1.2272 0.00073875 -0.63746 -0.00038373 0.58976 0.00035502 601.9688339032588 165.16 0.13428 160.37 160.3 160.44 -4.7898 5 3 2 0 0 0 0.8267 1 33055 33055 0.08335 0.08335 1 4745800 + 27040 13414 17973 17979 26662 26662 0.0180956357287414 LKWWQWWIWWW 11 Unmodified _LKWWQWWIWWW_ 0 0 0 REV__chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2940063476562 3 601.969751 1802.88742 NaN NaN NaN NaN NaN NaN NaN 102.24 1 97.918 97.418 98.418 -4.3208 0 0 0 0.23698 1 19574 19574 0 0 1 + 27041 13414 17973 17979 26663 26663 0.0180956357287414 LKWWQWWIWWW 11 Unmodified _LKWWQWWIWWW_ 0 0 0 REV__chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 601.969751 1802.88742 0.39983 0.00024068 1.3944 0.00083939 1.7942 0.0010801 602.3049736172624 165.24 0.10297 165.24 165.19 165.29 0 0 0 NaN 0.08335 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 14985000 + 27042 13414 17973 17979 0.0180956357287414 LKWYLDDL 8 Unmodified _LKWYLDDL_ 0 0 0 REV__tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1 REV__tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2709350585938 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 85.501 1 81.837 81.337 82.337 -3.6641 0 0 0 0.22674 1 16716 16716 14.838 2.5976 1 + 27043 25361 17974 17980 26664 26664 0.024552247287601858 LKYILLVK 8 Unmodified _LKYILLVK_ 0 0 0 ENSG00000011201|ENST00000262648|ANOS1 ENSG00000011201|ENST00000262648|ANOS1 ENSG00000011201|ENST00000262648|ANOS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 495.7575988769531 2 495.341521 988.668489 -0.19048 -9.435E-05 0.42859 0.0002123 0.23811 0.00011795 495.34172120917964 95.085 0.56042 91.204 90.916 91.477 -3.881 20 15 2 0 0 0 8448 1 18214 18214 0.0082765 0 1 1279600 27044 1071 17975 17981 26665 26665 0.17370159281517772 LKYLIRDIVK 10 Unmodified _LKYLIRDIVK_ 0 0 0 REV__ENSG00000115524|ENST00000335508|SF3B1 REV__ENSG00000115524|ENST00000335508|SF3B1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7587890625 2 630.905548 1259.79654 NaN NaN NaN NaN NaN NaN NaN 160.88 1 160.88 160.38 161.38 0 0 0 0 2.8426 1 32305 32305 0.043787 0 1 + 27045 15435 17976 17982 26666 26666 0.17703674804715774 LKYSVPQYREW 11 Unmodified _LKYSVPQYREW_ 0 0 0 REV__nc|ENSG00000243480|P04746-2|AMY2A REV__nc|ENSG00000243480|P04746-2|AMY2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2622985839844 3 490.257626 1467.75105 NaN NaN NaN NaN NaN NaN NaN 120.35 1 120.35 119.85 120.85 0 0 0 0 0.22632 1 23725 23725 0.03141 0 1 + + 27046 24291 17977 17983 26667 26667 0.035884045516922924 LLAAARLAAA 10 Unmodified _LLAAARLAAA_ 0 0 0 PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant;ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 471.2134704589844 2 470.800552 939.58655 -0.059736 -2.8124E-05 -0.029931 -1.4091E-05 -0.089667 -4.2215E-05 470.80054780604894 92.687 0.41502 88.762 88.515 88.93 -3.9251 18 11 2 0 0 0 1.0699 1 18169 18169 31.636 27.352 1 1372700 27047 5776 17978 17984 26668 26668 0.1143405692239412 LLAAARLAAA 10 Unmodified _LLAAARLAAA_ 0 0 0 PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant;ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 470.800552 939.58655 -0.15561 -7.3262E-05 -0.084642 -3.9849E-05 -0.24025 -0.00011311 470.80042114974697 89.034 0.31038 89.034 88.896 89.206 0 0.21413 0.00013712 NaN 31.636 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 696240 27048 5776 17978 17984 0.1143405692239412 LLAAARLAAA 10 Unmodified _LLAAARLAAA_ 0 0 0 PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant;ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 470.800552 939.58655 0.20616 9.7061E-05 -0.4538 -0.00021365 -0.24764 -0.00011659 470.8004060011864 92.867 0.49212 88.723 88.523 89.015 -4.1435 -0.096663 -0.00021048 NaN 31.636 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 764780 27049 5776 17978 17984 0.1143405692239412 LLAAARLAAA 10 Unmodified _LLAAARLAAA_ 0 0 0 PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant;ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 470.800552 939.58655 0.092229 4.3422E-05 -0.24931 -0.00011737 -0.15708 -7.3952E-05 470.8004802276634 92.569 0.43507 88.761 88.617 89.053 -3.8083 -0.059432 -1.7929E-05 NaN 31.636 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 671220 27050 5776 17978 17984 0.1143405692239412 LLADLEREK 9 Unmodified _LLADLEREK_ 0 0 0 nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5;nc|ENSG00000108469|O94762-2|RECQL5;nc|ENSG00000108469|O94762-3|RECQL5 nc|ENSG00000108469|O94762-4|RECQL5 nc|ENSG00000108469|O94762-4|RECQL5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7869262695312 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 101.18 1 101.18 100.68 101.68 0 0 0 0 0.23508 1 19857 19857 10.074 0.6908 1 27051 2476 17979 17985 26669 26669 0.06869397160471635 LLADTPDA 8 Unmodified _LLADTPDA_ 0 0 0 ENST00000592505.1_1_19:11038324-11039086:-|nuORF;ENSG00000130733|ENST00000586748|YIPF2 ENST00000592505.1_1_19:11038324-11039086:-|nuORF ENST00000592505.1_1_19:11038324-11039086:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3482666015625 1 815.414525 814.407249 0.53257 0.00043426 0.41084 0.00033501 0.94341 0.00076927 815.4144059312272 120.79 0.54041 116.33 116.02 116.56 -4.467 19 14 2 0 0 0 0.088049 1 23290 23290 78.445 4.0484 1 1750800 27052 3632 17980 17986 26670 26670 -0.007378721561963175 LLAEENQRL 9 Unmodified _LLAEENQRL_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7904663085938 2 543.301113 1084.58767 0.014011 7.6123E-06 0.47437 0.00025773 0.48838 0.00026534 543.3015740212138 64.646 0.93887 64.646 64.341 65.28 0 48 26 3 0 0 0 0.029139 1 12421 12421 82.529 12.197 1 5417000 27053 6567 17981 17987 26671 26671 0.048762265006644157 LLAEENQRL 9 Unmodified _LLAEENQRL_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7892456054688 2 543.301113 1084.58767 0.1798 9.7686E-05 0.63854 0.00034692 0.81834 0.0004446 543.3017145064779 67.619 1.3052 64.51 64.107 65.412 -3.1086 66 37 3 0 0 0 0.023341 2 13144 13144;13165 88.954 13.193 1 4937500 27054 6567 17981 17987 26672;26673 26672 0.048762265006644157 LLAEENQRL 9 Unmodified _LLAEENQRL_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7943115234375 2 543.301113 1084.58767 0.33583 0.00018246 -0.32055 -0.00017415 0.015284 8.3037E-06 543.3009961741495 68.139 0.59379 64.603 64.234 64.828 -3.5362 34 16 3 0 0 0 0.19171 1 12755 12755 38.176 8.335 1 4995500 27055 6567 17981 17987 26674 26674 0.048762265006644157 LLAEENQRL 9 Unmodified _LLAEENQRL_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.301113 1084.58767 0.4133 0.00022454 -0.097915 -5.3197E-05 0.31538 0.00017135 543.3012783609097 67.958 1.0423 64.631 64.239 65.282 -3.3268 0.033221 -9.3873E-05 NaN 88.954 59 29 3 NaN NaN NaN NaN 0 NaN NaN 0 4359900 27056 6567 17981 17987 0.048762265006644157 LLAEKIYKI 9 Unmodified _LLAEKIYKI_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 364.2337646484375 3 364.23387 1089.67978 0.214 7.7945E-05 -0.21858 -7.9614E-05 -0.0045831 -1.6693E-06 364.23371640468997 101.71 0.73613 101.71 101.4 102.13 0 49 20 4 0 0 0 0.11089 1 19927 19927 47.987 25.367 1 5519900 27057 1969;724 17982 17988 26675 26675 0.13852936584976305 LLAEKIYKI 9 Unmodified _LLAEKIYKI_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 364.9100646972656 3 364.23387 1089.67978 0.078501 2.8593E-05 -0.12035 -4.3835E-05 -0.041848 -1.5242E-05 364.23379167426697 105.76 0.73865 101.38 100.94 101.68 -4.3764 54 20 3 0 0 0 0.058839 1 20248 20248 59.368 34.487 1 8016600 27058 1969;724 17982 17988 26676 26676 0.13852936584976305 LLAEKIYKI 9 Unmodified _LLAEKIYKI_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 364.23387 1089.67978 -0.54607 -0.0001989 0.53068 0.00019329 -0.015395 -5.6072E-06 364.2340364665265 105.66 0.76608 101.4 100.96 101.72 -4.2638 -0.069051 0.00054472 NaN 59.368 61 21 4 NaN NaN NaN NaN 0 NaN NaN 0 8545000 27059 1969;724 17982 17988 0.13852936584976305 LLAEKIYKI 9 Unmodified _LLAEKIYKI_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 364.23387 1089.67978 0.059613 2.1713E-05 0.025217 9.1848E-06 0.08483 3.0898E-05 364.23382689983276 105.47 0.73751 101.38 100.97 101.71 -4.0913 -0.09151 -7.6027E-06 NaN 59.368 57 20 4 NaN NaN NaN NaN 0 NaN NaN 0 8477300 27060 1969;724 17982 17988 0.13852936584976305 LLAESSNEV 9 Unmodified _LLAESSNEV_ 0 0 0 REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2505798339844 2 481.245472 960.476391 0.53342 0.00025671 0.014484 6.9704E-06 0.5479 0.00026368 481.24558428319915 111.78 0.70032 107.55 107.11 107.81 -4.2289 37 19 3 0 0 0 0.32428 1 21449 21449 30.225 3.3412 1 1945400 + 27061 25024 17983 17989 26677 26677 -0.005428329272831434 LLAESVTEV 9 Unmodified _LLAESVTEV_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24932861328125 2 480.76604 959.517527 -0.26083 -0.0001254 0.15385 7.3966E-05 -0.10698 -5.143E-05 480.7660776029842 111.38 0.73029 106.96 106.61 107.34 -4.4231 33 20 2 0 0 0 0.32599 1 21932 21932 36.044 5.8194 1 6425900 27062 899 17984 17990 26678 26678 0.036149281121993226 LLAESVTEV 9 Unmodified _LLAESVTEV_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24945068359375 2 480.76604 959.517527 -0.058849 -2.8293E-05 -0.066007 -3.1734E-05 -0.12486 -6.0027E-05 480.76595781413664 111.59 0.69815 107.1 106.75 107.45 -4.4915 31 19 2 0 0 0 0.36689 1 21406 21406 34.102 5.6156 1 5069700 27063 899 17984 17990 26679 26679 0.036149281121993226 LLAESVTEV 9 Unmodified _LLAESVTEV_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2505798339844 2 480.76604 959.517527 0.55907 0.00026878 -0.64821 -0.00031164 -0.089149 -4.286E-05 480.7656395692335 111.31 0.6282 107.08 106.73 107.35 -4.2289 29 17 2 0 0 0 0.13419 1 21449 21449 60.39 26.287 1 5627300 27064 899 17984 17990 26680 26680 0.036149281121993226 LLAETHYQL 9 Unmodified _LLAETHYQL_ 0 0 0 nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF nc|ENSG00000132780|P49321-3|NASP nc|ENSG00000132780|P49321-3|NASP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79345703125 2 544.292756 1086.57096 0.74307 0.00040445 -0.042188 -2.2963E-05 0.70088 0.00038148 544.2928576531984 101.12 0.95171 101.12 100.38 101.33 0 41 26 3 0 0 0 0.19141 1 19815 19815 49.554 9.597 1 4019000 27065 12327 17985 17991 26681 26681 0.031137256147076187 LLAETHYQL 9 Unmodified _LLAETHYQL_ 0 0 0 nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF nc|ENSG00000132780|P49321-3|NASP nc|ENSG00000132780|P49321-3|NASP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7842407226562 2 544.292756 1086.57096 0.12422 6.7614E-05 0.077849 4.2373E-05 0.20207 0.00010999 544.2929451918749 105.27 0.70616 100.9 100.59 101.3 -4.3764 33 19 2 0 0 0 0.38759 1 20181 20181 37.075 22.117 1 3455400 27066 12327 17985 17991 26682 26682 0.031137256147076187 LLAETHYQL 9 Unmodified _LLAETHYQL_ 0 0 0 nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF nc|ENSG00000132780|P49321-3|NASP nc|ENSG00000132780|P49321-3|NASP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77392578125 2 544.292756 1086.57096 0.83976 0.00045707 -0.54443 -0.00029633 0.29532 0.00016074 544.2924838672268 104.99 0.78079 100.93 100.58 101.37 -4.0543 35 21 2 0 0 0 0.089388 1 20210 20210 57.722 9.3761 1 3046100 27067 12327 17985 17991 26683 26683 0.031137256147076187 LLAFKRARL 9 Unmodified _LLAFKRARL_ 0 0 0 REV__nc|ENSG00000173349|Q587I9|SFT2D3 REV__nc|ENSG00000173349|Q587I9|SFT2D3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7870483398438 2 544.358568 1086.70258 0.33701 0.00018346 -0.075588 -4.1147E-05 0.26143 0.00014231 544.8586072826356 144.19 0.10083 144.19 144.1 144.2 0 4 2 2 0 0 0 0.87888 1 28790 28790 2.0598 0 1 2884600 + 27068 24174 17986 17992 26684 26684 0.16270000493113912 LLAKKKLLYL 10 Unmodified _LLAKKKLLYL_ 0 0 0 ENST00000555109.1_1_14:24970801-24977459:+|nuORF ENST00000555109.1_1_14:24970801-24977459:+|nuORF ENST00000555109.1_1_14:24970801-24977459:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2879028320312 2 601.915384 1201.81622 NaN NaN NaN NaN NaN NaN NaN 94.617 1 90.627 90.127 91.127 -3.9907 0 0 0 0.22588 1 18542 18542 0.45834 0 1 27069 11228 17987 17993 26685 26685 0.22338050815528732 LLALPVLRKE 10 Unmodified _LLALPVLRKE_ 0 0 0 ENST00000589225.5_1_17:76793370-76793733:-|nuORF ENST00000589225.5_1_17:76793370-76793733:-|nuORF ENST00000589225.5_1_17:76793370-76793733:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3340454101562 2 576.379166 1150.74378 NaN NaN NaN NaN NaN NaN NaN 85.541 1 81.829 81.329 82.329 -3.7117 0 0 0 0.22588 1 16342 16342 5.7319 1.4026 1 27070 11584 17988 17994 26686 26686 0.17443716741945536 LLALRLPKY 9 Unmodified _LLALRLPKY_ 0 0 0 ENST00000567887.5_2_1:39893236-39893648:+|nuORF ENST00000567887.5_2_1:39893236-39893648:+|nuORF ENST00000567887.5_2_1:39893236-39893648:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7859497070312 2 543.855327 1085.6961 NaN NaN NaN NaN NaN NaN NaN 131.85 1 131.85 131.35 132.35 0 0 0 0 0.23508 1 26060 26060 5.2307 0.47466 1 27071 11388 17989 17995 26687 26687 0.1566806254174935 LLALRLPKY 9 Unmodified _LLALRLPKY_ 0 0 0 ENST00000567887.5_2_1:39893236-39893648:+|nuORF ENST00000567887.5_2_1:39893236-39893648:+|nuORF ENST00000567887.5_2_1:39893236-39893648:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77978515625 2 543.855327 1085.6961 NaN NaN NaN NaN NaN NaN NaN 136.79 1 131.87 131.37 132.37 -4.9216 0 0 0 0.19634 1 26293 26293 0.073264 0.069883 1 27072 11388 17989 17995 26688 26688 0.1566806254174935 LLALRLPKY 9 Unmodified _LLALRLPKY_ 0 0 0 ENST00000567887.5_2_1:39893236-39893648:+|nuORF ENST00000567887.5_2_1:39893236-39893648:+|nuORF ENST00000567887.5_2_1:39893236-39893648:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77978515625 2 543.855327 1085.6961 NaN NaN NaN NaN NaN NaN NaN 136.8 1 131.88 131.38 132.38 -4.9216 0 0 0 0.23508 1 26295 26295 5.2307 0.90143 1 27073 11388 17989 17995 26689 26689 0.1566806254174935 LLAMMAVDP 9 Unmodified _LLAMMAVDP_ 0 0 0 ENSG00000181273|ENST00000326855|OR5AK2 ENSG00000181273|ENST00000326855|OR5AK2 ENSG00000181273|ENST00000326855|OR5AK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24908447265625 2 480.748282 959.48201 0.19023 9.1453E-05 -1.2538 -0.00060275 -1.0635 -0.00051129 480.7475154583246 106.76 0.59617 106.76 106.5 107.1 0 26 16 2 0 0 0 0.41781 1 21030 21030 24.674 1.5255 1 1754800 27074 6719 17990 17996 26690 26690 0.0006485105917590772 LLAQIQQE 8 Unmodified _LLAQIQQE_ 0 0 0 ENSG00000215853|ENST00000316073|RPTN ENSG00000215853|ENST00000316073|RPTN ENSG00000215853|ENST00000316073|RPTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 472.7704772949219 2 471.766374 941.518196 0.0786 3.7081E-05 -0.25931 -0.00012234 -0.18071 -8.5255E-05 471.7662975866034 151.74 0.82124 146.99 146.6 147.42 -4.7523 51 22 3 0 0 0 8448 1 30197 30197 4.2837 0 1 8420200 27075 7753 17991 17997 26691 26691 0.045097675518945834 LLARCALF 8 Unmodified _LLARCALF_ 0 0 0 nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT nc|ENSG00000164362|O14746-4|TERT nc|ENSG00000164362|O14746-4|TERT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7641296386719 2 453.765123 905.515694 NaN NaN NaN NaN NaN NaN NaN 131.04 1 131.04 130.54 131.54 0 0 0 0 0.23711 1 25907 25907 0.62683 0 1 27076 5540 17992 17998 26692 26692 0.059156406132501616 LLARHLQQ 8 Unmodified _LLARHLQQ_ 0 0 0 REV__MAP4K2|p.P278H|1|0.61|ENSG00000168067|chr11:64800191-64800191|G/T|missense_variant REV__MAP4K2|p.P278H|1|0.61|ENSG00000168067|chr11:64800191-64800191|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26824951171875 2 489.795801 977.577048 NaN NaN NaN NaN NaN NaN NaN 121.01 1 116.32 115.82 116.82 -4.6873 0 0 0 0.23366 1 23229 23229 0.12286 0 1 + 27077 23831 17993 17999 26693 26693 0.08736288636896461 LLARPASCLHY 11 Unmodified _LLARPASCLHY_ 0 0 0 REV__ENSG00000169105|ENST00000306243|CHST14 REV__ENSG00000169105|ENST00000306243|CHST14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7723388671875 2 622.334433 1242.65431 NaN NaN NaN NaN NaN NaN NaN 52.306 1 49.218 48.718 49.718 -3.0876 0 0 0 0.22632 1 9619 9619 0.026206 0 1 + 27078 18077 17994 18000 26694 26694 0.042691387909144396 LLASGHAPPV 10 Unmodified _LLASGHAPPV_ 0 0 0 REV__ENSG00000135547|ENST00000368364|HEY2 REV__ENSG00000135547|ENST00000368364|HEY2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7784118652344 2 481.276909 960.539266 0.093983 4.5232E-05 0.02894 1.3928E-05 0.12292 5.916E-05 481.27692959380755 60.579 1.8293 57.355 56.533 58.362 -3.2237 85 51 2 0 0 0 0.67319 1 11421 11421 13.906 2.4113 1 1364400 + 27079 16277 17995 18001 26695 26695 0.05741777651417124 LLASPHPTA 9 Unmodified _LLASPHPTA_ 0 0 0 REV__ENST00000225655.5_1_17:4851977-4852085:-|nuORF REV__ENST00000225655.5_1_17:4851977-4852085:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.753662109375 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 114.12 1 109.65 109.15 110.15 -4.4726 0 0 0 0.23508 1 22488 22488 12.532 3.1841 1 + 27080 20045 17996 18002 26696 26696 0.040538022430382625 LLASTTPEE 9 Unmodified _LLASTTPEE_ 0 0 0 ENSG00000169609|ENST00000304177|C15orf40 ENSG00000169609|ENST00000304177|C15orf40 ENSG00000169609|ENST00000304177|C15orf40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2478942871094 2 480.747847 959.481142 0.19279 9.2681E-05 -0.20359 -9.7875E-05 -0.010803 -5.1934E-06 480.74768745623453 94.654 0.69972 90.463 90.264 90.964 -4.1911 24 19 2 0 0 0 0.31714 1 18041 18041 30.637 0.41173 1 1482000 27081 5991 17997 18003 26697 26697 -0.00021948784524283838 LLATGLNNG 9 Unmodified _LLATGLNNG_ 0 0 0 ENST00000581089.1_1_17:25621216-25630672:+|nuORF;nc|ENSG00000109046|Q9Y6I7-3|WSB1;ENSG00000109046|ENST00000262394|WSB1 ENST00000581089.1_1_17:25621216-25630672:+|nuORF ENST00000581089.1_1_17:25621216-25630672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2216491699219 2 436.745442 871.476331 NaN NaN NaN NaN NaN NaN NaN 135.95 1 131.31 130.81 131.81 -4.6399 0 0 0 0.19657 1 26821 26821 4.897 0 1 27082 2510 17998 18004 26698 26698 0.035452118633770624 LLAWDSVEEIV 11 Unmodified _LLAWDSVEEIV_ 0 0 0 nc|ENSG00000186976|Q5THR3-5|EFCAB6;nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;EFCAB6|p.S719Vfs*3|1|0.34|ENSG00000186976|chr22:43632182-43632182|T/-|frameshift_variant nc|ENSG00000186976|Q5THR3-5|EFCAB6 nc|ENSG00000186976|Q5THR3-5|EFCAB6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2379455566406 3 425.227333 1272.66017 0.2809 0.00011945 0.087625 3.7261E-05 0.36853 0.00015671 425.22740413762574 67.907 0.53382 64.371 64.056 64.59 -3.5362 34 14 3 0 0 0 0.72109 1 12786 12786 10.315 0 1 3150200 27083 7087 17999 18005 26699 26699 0.03474515783568677 LLCCHPGWSA 10 Unmodified _LLCCHPGWSA_ 0 0 0 ENST00000595335.5_1_19:57874980-57882384:+|nuORF ENST00000595335.5_1_19:57874980-57882384:+|nuORF ENST00000595335.5_1_19:57874980-57882384:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7862548828125 2 543.746605 1085.47866 NaN NaN NaN NaN NaN NaN NaN 85.28 1 81.616 81.116 82.116 -3.6641 0 0 0 0.22535 1 16672 16672 20.454 3.3407 1 27084 11659 18000 18006 26700 26700 -0.06066398994835254 LLCDDCDI 8 Unmodified _LLCDDCDI_ 0 0 0 nc|ENSG00000055609|Q8NEZ4-3|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;ENSG00000055609|ENST00000262189|KMT2C;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant;KMT2C|p.K1247Nfs*56|1|0.22|ENSG00000055609|chr7:152207400-152207400|T/-|frameshift_variant;KMT2D|p.A3552Sfs*4|1|0.51|ENSG00000167548|chr12:49034153-49034154|-/T|frameshift_variant;KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant;KMT2D|p.T4629Pfs*11|1|0.27|ENSG00000167548|chr12:49030395-49030395|G/-|frameshift_variant;KMT2D|p.S4327Afs*57|1|0.44|ENSG00000167548|chr12:49031727-49031727|G/-|frameshift_variant;KMT2D|p.Q4156Nfs*5|1|0.15|ENSG00000167548|chr12:49032239-49032239|G/-|frameshift_variant;KMT2D|p.V3089Wfs*30|1|0.12|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant;KMT2C|p.K1164Rfs*17|1|0.4|ENSG00000055609|chr7:152222008-152222009|TT/-|frameshift_variant;KMT2D|p.Y2907Tfs*3|1|0.26|ENSG00000167548|chr12:49038637-49038637|A/-|frameshift_variant;KMT2D|p.P2716Lfs*17|1|0.24|ENSG00000167548|chr12:49039519-49039519|C/-|frameshift_variant;KMT2D|p.S2532Lfs*11|1|0.24|ENSG00000167548|chr12:49040177-49040177|G/-|frameshift_variant;KMT2D|p.P2354Lfs*30|7|0.16|ENSG00000167548|chr12:49040709-49040709|G/-|frameshift_variant;KMT2D|p.G2279Wfs*20|1|0.45|ENSG00000167548|chr12:49040935-49040936|-/A|frameshift_variant;KMT2D|p.A2119Lfs*25|1|0.13|ENSG00000167548|chr12:49041416-49041416|G/-|frameshift_variant;KMT2D|p.K1466Rfs*40|1|0.31|ENSG00000167548|chr12:49046632-49046632|G/-|frameshift_variant;KMT2D|p.P3102Lfs*17|1|0.26|ENSG00000167548|chr12:49038051-49038051|G/-|frameshift_variant;KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;KMT2D|p.G5182Afs*61|1|0.57|ENSG00000167548|chr12:49026421-49026421|C/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant nc|ENSG00000055609|Q8NEZ4-3|KMT2C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 455.2733154296875 2 455.188254 908.361955 NaN NaN NaN NaN NaN NaN NaN 136.66 1 131.76 131.26 132.26 -4.8951 0 0 0 0.23294 1 26265 26265 0.12286 0 1 27085 1273;5817 18001 18007 26701 26701 -0.09589182005242947 LLCDDRGRA 9 Unmodified _LLCDDRGRA_ 0 0 0 REV__nc|ENSG00000078269|O15056-2|SYNJ2 REV__nc|ENSG00000078269|O15056-2|SYNJ2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.1831359863281 3 340.174797 1017.50256 NaN NaN NaN NaN NaN NaN NaN 119.04 1 119.04 118.54 119.54 0 0 0 0 0.23508 1 23449 23449 2.9952 0 1 + 27086 14377 18002 18008 26702 26702 -0.005488422367875501 LLCEMGWKEA 10 Unmodified _LLCEMGWKEA_ 0 0 0 ENST00000355260.7_1_11:3744416-3744503:-|nuORF ENST00000355260.7_1_11:3744416-3744503:-|nuORF ENST00000355260.7_1_11:3744416-3744503:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2640380859375 2 590.280477 1178.5464 NaN NaN NaN NaN NaN NaN NaN 108.73 1 104.55 104.05 105.05 -4.1826 0 0 0 2.8426 1 20925 20925 0.063865 0 1 27087 8952 18003 18009 26703 26703 -0.03572993854663764 LLCEPDYNLY 10 Unmodified _LLCEPDYNLY_ 0 0 0 REV__MIOS|p.T152Lfs*4|1|0.05|ENSG00000164654|chr7:7572928-7572929|-/TTGA|frameshift_variant REV__MIOS|p.T152Lfs*4|1|0.05|ENSG00000164654|chr7:7572928-7572929|-/TTGA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7717895507812 2 621.789189 1241.56383 0.29797 0.00018528 1.3397 0.00083302 1.6377 0.0010183 622.291830433114 88.28 0.58263 88.28 87.847 88.43 0 33 16 3 0 0 0 0.61964 1 17232 17232 18.146 4.2403 1 4043500 + 27088 17699 18004 18010 26704 26704 -0.04729375048032125 LLCEPDYNLY 10 Unmodified _LLCEPDYNLY_ 0 0 0 REV__MIOS|p.T152Lfs*4|1|0.05|ENSG00000164654|chr7:7572928-7572929|-/TTGA|frameshift_variant REV__MIOS|p.T152Lfs*4|1|0.05|ENSG00000164654|chr7:7572928-7572929|-/TTGA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7789916992188 2 621.789189 1241.56383 0.94974 0.00059054 -0.10256 -6.3772E-05 0.84718 0.00052677 622.2906617876203 92.419 0.59508 88.493 88.232 88.827 -3.9251 38 16 3 0 0 0 0.57735 2 18073 18073;18115 20.454 4.6064 1 3364700 + 27089 17699 18004 18010 26705;26706 26705 -0.04729375048032125 LLCEPDYNLY 10 Unmodified _LLCEPDYNLY_ 0 0 0 REV__MIOS|p.T152Lfs*4|1|0.05|ENSG00000164654|chr7:7572928-7572929|-/TTGA|frameshift_variant REV__MIOS|p.T152Lfs*4|1|0.05|ENSG00000164654|chr7:7572928-7572929|-/TTGA|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 621.789189 1241.56383 0.29797 0.00018528 1.3397 0.00083302 1.6377 0.0010183 622.291830433114 88.28 0.58263 88.28 87.847 88.43 0 -0.12721 0.0012739 NaN 20.454 33 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4043500 + 27090 17699 18004 18010 -0.04729375048032125 LLCEPDYNLY 10 Unmodified _LLCEPDYNLY_ 0 0 0 REV__MIOS|p.T152Lfs*4|1|0.05|ENSG00000164654|chr7:7572928-7572929|-/TTGA|frameshift_variant REV__MIOS|p.T152Lfs*4|1|0.05|ENSG00000164654|chr7:7572928-7572929|-/TTGA|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 621.789189 1241.56383 0.94974 0.00059054 -0.10256 -6.3772E-05 0.84718 0.00052677 622.2906617876203 92.419 0.59508 88.493 88.232 88.827 -3.9251 0.085928 -0.00051973 NaN 20.454 38 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3364700 + 27091 17699 18004 18010 -0.04729375048032125 LLCEPDYNLY 10 Unmodified _LLCEPDYNLY_ 0 0 0 REV__MIOS|p.T152Lfs*4|1|0.05|ENSG00000164654|chr7:7572928-7572929|-/TTGA|frameshift_variant REV__MIOS|p.T152Lfs*4|1|0.05|ENSG00000164654|chr7:7572928-7572929|-/TTGA|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 621.789189 1241.56383 0.50499 0.000314 -0.20606 -0.00012812 0.29893 0.00018587 622.2914689383322 92.543 0.51825 88.449 88.19 88.708 -4.0946 0.04128 -0.00064843 NaN 20.454 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1914100 + 27092 17699 18004 18010 -0.04729375048032125 LLCLCPGP 8 Unmodified _LLCLCPGP_ 0 0 0 REV__ENST00000556302.5_1_14:24838518-24843333:+|nuORF REV__ENST00000556302.5_1_14:24838518-24843333:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 408.2127990722656 2 408.211335 814.408117 NaN NaN NaN NaN NaN NaN NaN 58.085 1 55.174 54.674 55.674 -2.9105 0 0 0 0.23294 1 11152 11152 0.12286 0 1 + 27093 22993 18005 18011 26707 26707 -0.006510723124847573 LLCMNCHM 8 Unmodified _LLCMNCHM_ 0 0 0 ENST00000471332.1_1_3:403392-405149:+|nuORF ENST00000471332.1_1_3:403392-405149:+|nuORF ENST00000471332.1_1_3:403392-405149:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.13427734375 3 322.1339 963.37987 NaN NaN NaN NaN NaN NaN NaN 136.76 1 131.84 131.34 132.34 -4.9216 0 0 0 0.21486 1 26286 26286 0.45834 0 1 27094 10210 18006 18012 26708 26708 -0.10328461555729973 LLCNNLNQY 9 Unmodified _LLCNNLNQY_ 0 0 0 NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant;ENST00000486873.2_1_2:169699570-169711975:+|nuORF;NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant;nc|ENSG00000163072|Q8IVI9-3|NOSTRIN;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7800903320312 2 547.768591 1093.52263 0.61568 0.00033725 1.1537 0.00063194 1.7693 0.00096919 547.7692848191391 44.575 0.70038 44.575 44.323 45.023 0 21 19 2 0 0 0 0.60805 1 8338 8338 12.532 0.89125 1 1612300 27095 12701 18007 18013 26709 26709 -0.020390912968423436 LLCPARSF 8 Unmodified _LLCPARSF_ 0 0 0 REV__ENST00000591551.1_1_19:44610541-44612434:+|nuORF REV__ENST00000591551.1_1_19:44610541-44612434:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74749755859375 2 453.746931 905.479308 NaN NaN NaN NaN NaN NaN NaN 123.52 1 118.93 118.43 119.43 -4.5926 0 0 0 0.21486 1 23780 23780 6.3541 0 1 + 27096 19905 18008 18014 26710 26710 0.022787637165492924 LLCQLVRKA 9 Unmodified _LLCQLVRKA_ 0 0 0 REV__ENSG00000275342|ENST00000615670|PRAG1 REV__ENSG00000275342|ENST00000615670|PRAG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2650756835938 2 522.323337 1042.63212 NaN NaN NaN NaN NaN NaN NaN 100.08 1 96.086 95.586 96.586 -3.9895 0 0 0 0.19649 1 19224 19224 0.12781 0 1 + 27097 19931 18009 18015 26711 26711 0.1125095911313565 LLCQPFQL 8 Unmodified _LLCQPFQL_ 0 0 0 REV__nc|ENSG00000000460|Q9NSG2-3|FIRRM REV__nc|ENSG00000000460|Q9NSG2-3|FIRRM MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.782470703125 2 481.262413 960.510274 -0.14566 -7.01E-05 0.16452 7.9177E-05 0.018862 9.0775E-06 481.2624736085241 89.793 1.2291 89.793 89.243 90.472 0 48 34 2 0 0 0 0.69887 1 17456 17456 14.582 0 1 3310100 + 27098 13818 18010 18016 26712 26712 0.02843917030781995 LLCSLCDKLS 10 Unmodified _LLCSLCDKLS_ 0 0 0 REV__nc|ENSG00000105339|A2RUS2-2|DENND3 REV__nc|ENSG00000105339|A2RUS2-2|DENND3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7813720703125 2 547.782853 1093.55115 NaN NaN NaN NaN NaN NaN NaN 90.312 1 86.452 85.952 86.952 -3.8595 0 0 0 0.22588 1 17669 17669 13.042 0 1 + 27099 14979 18011 18017 26713 26713 0.008118902880823953 LLDADIAI 8 Unmodified _LLDADIAI_ 0 0 0 PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1;nc|ENSG00000149090|Q6UXH9-3|PAMR1 PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4037475585938 1 843.482211 842.474934 0.49874 0.00042068 -0.26424 -0.00022289 0.2345 0.0001978 843.4818308096983 149.89 0.73996 149.89 149.55 150.29 0 34 20 2 0 0 0 0.16788 1 30082 30082 49.669 6.7009 1 7229500 27100 4769 18012 18018 26714 26714 0.04739577774614645 LLDADIAI 8 Unmodified _LLDADIAI_ 0 0 0 PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1;nc|ENSG00000149090|Q6UXH9-3|PAMR1 PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3773193359375 1 843.482211 842.474934 0.39204 0.00033068 -0.031825 -2.6844E-05 0.36022 0.00030384 843.4821744835796 155.23 0.97375 149.95 149.53 150.51 -5.2854 45 26 2 0 0 0 0.13334 1 30176 30176 56.541 2.9657 1 9418200 27101 4769 18012 18018 26715 26715 0.04739577774614645 LLDAVYGGL 9 Unmodified _LLDAVYGGL_ 0 0 0 REV__nc|ENSG00000158486|Q8TD57|DNAH3 REV__nc|ENSG00000158486|Q8TD57|DNAH3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22900390625 2 460.758018 919.501483 -0.067562 -3.113E-05 -1.4691 -0.00067692 -1.5367 -0.00070805 460.75677183379213 136.68 1.1656 132.04 131.6 132.77 -4.6399 107 32 5 0 0 0 0.65155 1 26896 26896 28.487 0 1 44719000 + 27102 17337 18013 18019 26716 26716 0.03851266665969888 LLDCPTQNPWG 11 Unmodified _LLDCPTQNPWG_ 0 0 0 REV__ENST00000592887.1_1_17:76993904-77002146:-|nuORF REV__ENST00000592887.1_1_17:76993904-77002146:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.780029296875 2 622.29243 1242.57031 0.57102 0.00035534 -0.95591 -0.00059486 -0.3849 -0.00023952 622.2915080018577 90.903 0.51935 86.809 86.532 87.051 -4.0946 24 14 2 0 0 0 0.75285 1 17295 17295 8.1555 1.9497 1 2400900 + 27103 23353 18014 18020 26717 26717 -0.04127437096644826 LLDDLYKYFFF 11 Unmodified _LLDDLYKYFFF_ 0 0 0 ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3805541992188 2 742.379029 1482.7435 NaN NaN NaN NaN NaN NaN NaN 168 1 163.11 162.61 163.61 -4.8916 0 0 0 0.22264 1 33093 33093 0.65807 0 1 27104 2228 18015 18021 26718 26718 0.021442522313918744 LLDDLYKYFFF 11 Unmodified _LLDDLYKYFFF_ 0 0 0 ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3805541992188 2 742.379029 1482.7435 NaN NaN NaN NaN NaN NaN NaN 168.01 1 163.12 162.62 163.62 -4.8916 0 0 0 0.22943 1 33095 33095 8.7454 1.1365 1 27105 2228 18015 18021 26719 26719 0.021442522313918744 LLDDNMQI 8 Unmodified _LLDDNMQI_ 0 0 0 PHKG2|p.R305Afs*19|1|0.54|ENSG00000156873|chr16:30756696-30756696|C/-|frameshift_variant;nc|ENSG00000156873|P15735-2|PHKG2;ENSG00000156873|ENST00000563588|PHKG2 PHKG2|p.R305Afs*19|1|0.54|ENSG00000156873|chr16:30756696-30756696|C/-|frameshift_variant PHKG2|p.R305Afs*19|1|0.54|ENSG00000156873|chr16:30756696-30756696|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23858642578125 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 105.5 1 101.12 100.62 101.62 -4.3764 0 0 0 0.20568 1 20225 20225 20.871 1.4322 1 27106 5107 18016 18022 26720 26720 -0.02317871453783482 LLDDTGLAY 9 Unmodified _LLDDTGLAY_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;ENST00000473626.1_1_2:219457053-219457431:+|nuORF nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2622985839844 2 490.75039 979.486227 0.18271 8.9664E-05 0.22722 0.00011151 0.40993 0.00020117 490.7504327411844 120.15 1.0232 120.15 119.65 120.68 0 66 28 3 0 0 0 0.04585 1 23725 23725 60.47 30.629 1 10523000 27107 4561 18017 18023 26721 26721 -0.004336449219067617 LLDDTGLAY 9 Unmodified _LLDDTGLAY_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;ENST00000473626.1_1_2:219457053-219457431:+|nuORF nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.75039 979.486227 0.4264 0.00020926 -0.10844 -5.3219E-05 0.31795 0.00015604 490.7502632226344 125.15 1.1203 120.39 119.99 121.11 -4.7681 0.085088 -0.00024676 NaN 60.47 68 31 3 NaN NaN NaN NaN 0 NaN NaN 0 12555000 27108 4561 18017 18023 -0.004336449219067617 LLDGESRQY 9 Unmodified _LLDGESRQY_ 0 0 0 tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1 tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1 tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2711181640625 2 540.769645 1079.52474 0.086712 4.6891E-05 -0.1328 -7.1814E-05 -0.046088 -2.4923E-05 540.7697410443769 55.936 0.21161 52.76 52.657 52.869 -3.1761 7 5 2 0 0 0 0.40602 1 10395 10395 25.399 4.9457 1 513350 27109 26332 18018 18024 26722 26722 -0.011843392873743142 LLDGVTVSL 9 Unmodified _LLDGVTVSL_ 0 0 0 sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1 sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1 sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2248840332031 2 458.771126 915.527698 -0.06835 -3.1357E-05 0.10396 4.7693E-05 0.035607 1.6336E-05 458.77115949764703 80.458 0.81125 76.948 76.543 77.355 -3.5102 37 22 2 0 0 0 0.037229 1 15676 15676 64.236 10.404 1 17095000 27110 25766 18019 18025 26723 26723 0.06655535837421667 LLDGVTVSL 9 Unmodified _LLDGVTVSL_ 0 0 0 sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1 sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1 sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23358154296875 2 458.771126 915.527698 -0.058694 -2.6927E-05 0.097858 4.4895E-05 0.039165 1.7968E-05 458.77116809711964 80.818 0.87654 76.978 76.597 77.474 -3.8392 39 24 2 0 0 0 0.031632 1 15321 15321 71.134 11.06 1 12361000 27111 25766 18019 18025 26724 26724 0.06655535837421667 LLDGYLISYF 10 Unmodified _LLDGYLISYF_ 0 0 0 REV__tr|U7SJK5|U7SJK5_FUSNUDUF2229domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02087PE=4SV=1 REV__tr|U7SJK5|U7SJK5_FUSNUDUF2229domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02087PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2816162109375 2 602.31844 1202.62233 0.45668 0.00027507 -0.45711 -0.00027532 -0.0004275 -2.5749E-07 602.318196463885 152.95 0.8187 147.73 147.22 148.04 -5.2209 39 22 2 0 0 0 0.75442 1 29554 29554 4.3292 0 1 11155000 + 27112 24921 18020 18026 26725 26725 0.029120495887582365 LLDHFEIA 8 Unmodified _LLDHFEIA_ 0 0 0 COL6A6|p.T1998A|1|0.09|ENSG00000206384|chr3:130661798-130661798|A/G|missense_variant COL6A6|p.T1998A|1|0.09|ENSG00000206384|chr3:130661798-130661798|A/G|missense_variant COL6A6|p.T1998A|1|0.09|ENSG00000206384|chr3:130661798-130661798|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7439270019531 2 479.255643 956.496732 0.2299 0.00011018 0.31802 0.00015241 0.54791 0.00026259 479.2556711091689 138.73 0.81563 133.88 133.5 134.32 -4.8492 43 22 3 0 0 0 0.58903 1 26808 26808 38.151 6.0342 1 3683700 27113 631 18021 18027 26726 26726 0.016743825231856135 LLDHHLRFV 9 Unmodified _LLDHHLRFV_ 0 0 0 REV__ENST00000381278.3_1_22:43089799-43091637:-|nuORF REV__ENST00000381278.3_1_22:43089799-43091637:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3343505859375 2 575.330008 1148.64546 -0.019477 -1.1206E-05 0.042432 2.4413E-05 0.022955 1.3207E-05 575.3299599353832 133.88 1.2318 129.24 128.79 130.02 -4.6399 75 34 3 0 0 0 0.54354 1 26414 26414 16.942 1.0951 1 9329700 + 27114 21165 18022 18028 26727 26727 0.07708533216737123 LLDHPKKEV 9 Unmodified _LLDHPKKEV_ 0 0 0 ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;CTNND1|p.S895Ifs*8|1|0.33|ENSG00000198561|chr11:57814353-57814354|-/A|frameshift_variant;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;CTNND1|p.Q800Tfs*4|1|0.46|ENSG00000198561|chr11:57809427-57809428|-/A|frameshift_variant;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.E842Kfs*10|1|0.19|ENSG00000198561|chr11:57810192-57810192|A/-|frameshift_variant;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;ENST00000527599.1_1_11:57569484-57571277:+|nuORF ENSG00000198561|ENST00000399050|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2134704589844 3 360.213358 1077.61824 -0.25879 -9.322E-05 0.31652 0.00011402 0.057731 2.0795E-05 360.2133985812754 20.725 0.42408 20.725 20.495 20.919 0 33 11 4 0 0 0 0.43201 1 3423 3423 23.801 6.3584 1 5264700 27115 747 18023 18029 26728 26728 0.0825400488570267 LLDHPKKEV 9 Unmodified _LLDHPKKEV_ 0 0 0 ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;CTNND1|p.S895Ifs*8|1|0.33|ENSG00000198561|chr11:57814353-57814354|-/A|frameshift_variant;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;CTNND1|p.Q800Tfs*4|1|0.46|ENSG00000198561|chr11:57809427-57809428|-/A|frameshift_variant;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.E842Kfs*10|1|0.19|ENSG00000198561|chr11:57810192-57810192|A/-|frameshift_variant;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;ENST00000527599.1_1_11:57569484-57571277:+|nuORF ENSG00000198561|ENST00000399050|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20391845703125 3 360.213358 1077.61824 -0.12919 -4.6535E-05 0.18167 6.5441E-05 0.052485 1.8906E-05 360.2133803841399 22.197 0.38191 20.743 20.528 20.91 -1.4535 28 10 4 0 0 0 0.43201 2 3525 3511;3525 23.801 4.1577 1 2842600 27116 747 18023 18029 26729;26730 26730 0.0825400488570267 LLDIAPHAI 9 Unmodified _LLDIAPHAI_ 0 0 0 nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79553706-79569486:-|nuORF nc|ENSG00000151208|Q8TDM6-2|DLG5 nc|ENSG00000151208|Q8TDM6-2|DLG5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78668212890625 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 135.92 1 131.03 130.53 131.53 -4.8951 0 0 0 0.041154 1 26116 26116 56.541 18.39 1 27117 4852 18024 18030 26731 26731 0.07734948311224343 LLDIYERRDA 10 Unmodified _LLDIYERRDA_ 0 0 0 REV__nc|ENSG00000163349|Q86Z02-2|HIPK1 REV__nc|ENSG00000163349|Q86Z02-2|HIPK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 632.232421875 2 632.338227 1262.6619 NaN NaN NaN NaN NaN NaN NaN 165.05 1 160.1 159.6 160.6 -4.9484 0 0 0 0.22588 1 32226 32226 6.7232 0.51738 1 + 27118 17561 18025 18031 26732 26732 0.04107569592179061 LLDKIVKRP 9 Unmodified _LLDKIVKRP_ 0 0 0 ASB17|p.N177Tfs*7|1|0.18|ENSG00000154007|chr1:75922231-75922231|T/-|frameshift_variant;ASB17|p.N177Kfs*21|2|0.42|ENSG00000154007|chr1:75922230-75922231|-/T|frameshift_variant;ENSG00000154007|ENST00000284142|ASB17 ASB17|p.N177Tfs*7|1|0.18|ENSG00000154007|chr1:75922231-75922231|T/-|frameshift_variant ASB17|p.N177Tfs*7|1|0.18|ENSG00000154007|chr1:75922231-75922231|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2613525390625 2 541.358234 1080.70191 NaN NaN NaN NaN NaN NaN NaN 157.68 1 152.39 151.89 152.89 -5.2854 0 0 0 0.23508 1 30601 30601 4.756 0 1 27119 229 18026 18032 26733 26733 0.16479161053416647 LLDLIKGIRY 10 Unmodified _LLDLIKGIRY_ 0 0 0 ENSG00000132518|ENST00000254854|GUCY2D ENSG00000132518|ENST00000254854|GUCY2D ENSG00000132518|ENST00000254854|GUCY2D MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2886962890625 2 602.376623 1202.73869 NaN NaN NaN NaN NaN NaN NaN 87.488 1 83.492 82.992 83.992 -3.9953 0 0 0 0.22588 1 16661 16661 4.3292 0 1 27120 3739 18027 18033 26734 26734 0.14543412879334028 LLDLTRKSLEG 11 Unmodified _LLDLTRKSLEG_ 0 0 0 REV__ENSG00000151320|ENST00000280979|AKAP6 REV__ENSG00000151320|ENST00000280979|AKAP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7811889648438 2 622.864077 1243.7136 1.1815 0.00073588 3.5341 0.0022013 4.7156 0.0029372 623.3682543118559 165.42 0.17142 160.63 160.54 160.71 -4.7898 5 4 2 0 0 0 0.64855 1 33140 33140 15.248 0 1 8244100 + 27121 17059 18028 18034 26735 26735 0.10149313286092365 LLDLTRKSLEG 11 Unmodified _LLDLTRKSLEG_ 0 0 0 REV__ENSG00000151320|ENST00000280979|AKAP6 REV__ENSG00000151320|ENST00000280979|AKAP6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 622.864077 1243.7136 1.1815 0.00073588 3.5341 0.0022013 4.7156 0.0029372 623.3682543118559 165.42 0.17142 160.63 160.54 160.71 -4.7898 0.1345 -0.0011747 NaN 15.248 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 8244100 + 27122 17059 18028 18034 0.10149313286092365 LLDRIVSV 8 Unmodified _LLDRIVSV_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2386474609375 2 457.78711 913.559667 NaN NaN NaN NaN NaN NaN NaN 120.8 1 116.15 115.65 116.65 -4.645 0 0 0 0.11889 1 23189 23189 41.956 3.9816 1 27123 5050 18029 18035 26736 26736 0.09942948311231703 LLDRLFMW 8 Unmodified _LLDRLFMW_ 0 0 0 REV__GJB7|p.G119Afs*37|1|0.05|ENSG00000164411|chr6:87284557-87284557|C/-|frameshift_variant REV__GJB7|p.G119Afs*37|1|0.05|ENSG00000164411|chr6:87284557-87284557|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7802734375 2 547.296788 1092.57902 0.29034 0.0001589 0.13621 7.4546E-05 0.42655 0.00023345 547.2968459672776 72.585 0.48254 72.585 72.301 72.783 0 23 13 3 0 0 0 0.2118 1 14062 14062 44.407 2.5674 1 2286600 + 27124 17682 18030 18036 26737 26737 0.036435813304706244 LLDRRRLRF 9 Unmodified _LLDRRRLRF_ 0 0 0 REV__nc|ENSG00000078596|O43736-2|ITM2A REV__nc|ENSG00000078596|O43736-2|ITM2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7818603515625 2 622.888555 1243.76256 0.9855 0.00061386 1.0093 0.00062868 1.9948 0.0012425 623.3903030582445 137.03 0.10336 132.39 132.34 132.44 -4.6413 4 2 2 0 0 0 0.84208 1 27047 27047 7.2892 2.7604 1 1794500 + 27125 14383 18031 18037 26738 26738 0.15042691156327237 LLDRRRQITL 10 Unmodified _LLDRRRQITL_ 0 0 0 ENST00000419735.7_1_7:105516268-105516867:-|nuORF;ATXN7L1|p.Q23Afs*59|1|0.12|ENSG00000146776|chr7:105876493-105876494|-/T|frameshift_variant ENST00000419735.7_1_7:105516268-105516867:-|nuORF ENST00000419735.7_1_7:105516268-105516867:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 642.3323974609375 2 642.398953 1282.78335 NaN NaN NaN NaN NaN NaN NaN 172.2 1 167.3 166.8 167.8 -4.8977 0 0 0 2.8426 1 34147 34147 0.26539 0.093389 1 27126 281 18032 18038 26739 26739 0.15327236745361006 LLDSLRTILV 10 Unmodified _LLDSLRTILV_ 0 0 0 REV__ENSG00000160218|ENST00000291574|TRAPPC10 REV__ENSG00000160218|ENST00000291574|TRAPPC10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21942138671875 3 381.576296 1141.70706 0.26813 0.00010231 -0.273 -0.00010417 -0.0048682 -1.8576E-06 381.5761669041364 32.114 0.34744 30.087 29.869 30.216 -2.0264 17 9 2 0 0 0 0.8821 1 5558 5558 10.151 3.9587 1 971890 + 27127 17406 18033 18039 26740 26740 0.14187420125381323 LLDSLVQIY 9 Unmodified _LLDSLVQIY_ 0 0 0 REV__ENSG00000183733|ENST00000332372|FIGLA REV__ENSG00000183733|ENST00000332372|FIGLA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26904296875 2 532.305332 1062.59611 0.077506 4.1257E-05 0.17033 9.0669E-05 0.24784 0.00013193 532.3053147586805 115.63 0.84285 115.63 115.27 116.12 0 71 23 4 0 0 0 0.55979 1 22834 22834 15.847 0 1 16745000 + 27128 18856 18034 18040 26741 26741 0.0673178041729443 LLDSSQKNLY 10 Unmodified _LLDSSQKNLY_ 0 0 0 ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000188295|Q96BR6|ZNF669 ENSG00000188295|ENST00000448299|ZNF669 ENSG00000188295|ENST00000448299|ZNF669 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2539672851562 2 590.814053 1179.61355 0.36553 0.00021596 -0.20594 -0.00012167 0.15959 9.4287E-05 590.8138599102433 73.364 1.0917 73.364 72.715 73.807 0 74 30 4 0 0 0 0.041169 1 14248 14248 125.04 67.566 1 12477000 27129 7158 18035 18041 26742 26742 0.030930759523016604 LLDSSQKNLY 10 Unmodified _LLDSSQKNLY_ 0 0 0 ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000188295|Q96BR6|ZNF669 ENSG00000188295|ENST00000448299|ZNF669 ENSG00000188295|ENST00000448299|ZNF669 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2667236328125 2 590.814053 1179.61355 0.46491 0.00027468 -0.23083 -0.00013638 0.23408 0.0001383 590.8138443154648 76.733 0.799 73.318 73.039 73.838 -3.4151 55 22 3 0 0 0 0.35759 1 15055 15055 43.982 29.576 1 12856000 27130 7158 18035 18041 26743 26743 0.030930759523016604 LLDSSQKNLY 10 Unmodified _LLDSSQKNLY_ 0 0 0 ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000188295|Q96BR6|ZNF669 ENSG00000188295|ENST00000448299|ZNF669 ENSG00000188295|ENST00000448299|ZNF669 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.267333984375 2 590.814053 1179.61355 0.45776 0.00027045 -0.099238 -5.8631E-05 0.35853 0.00021182 590.8138483501401 77.238 0.87752 73.471 73.018 73.895 -3.7664 81 24 4 0 0 0 0.041169 1 14660 14660 125.04 73.623 1 10293000 27131 7158 18035 18041 26744 26744 0.030930759523016604 LLDSSQKNLY 10 Unmodified _LLDSSQKNLY_ 0 0 0 ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000188295|Q96BR6|ZNF669 ENSG00000188295|ENST00000448299|ZNF669 ENSG00000188295|ENST00000448299|ZNF669 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2754516601562 2 590.814053 1179.61355 0.12945 7.648E-05 0.21019 0.00012418 0.33964 0.00020066 590.8140412451434 77.083 0.84663 73.424 73.003 73.849 -3.6588 79 23 4 0 0 0 0.34808 1 14744 14744 53.317 33.955 1 11860000 27132 7158 18035 18041 26745 26745 0.030930759523016604 LLDTQHCQ 8 Unmodified _LLDTQHCQ_ 0 0 0 nc|ENSG00000180869|Q8NAE3|LINC01555 nc|ENSG00000180869|Q8NAE3|LINC01555 nc|ENSG00000180869|Q8NAE3|LINC01555 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7235412597656 2 479.226559 956.438566 0.21693 0.00010396 0.87809 0.0004208 1.095 0.00052476 479.22641741668167 136.79 0.20905 131.96 131.84 132.05 -4.8307 6 5 2 0 0 0 0.99494 1 26344 26344 13.508 7.1538 1 1117200 27133 12496 18036 18042 26746 26746 -0.041396223937454124 LLDTTQKYL 9 Unmodified _LLDTTQKYL_ 0 0 0 ENSG00000171466|ENST00000453372|ZNF562 ENSG00000171466|ENST00000453372|ZNF562 ENSG00000171466|ENST00000453372|ZNF562 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7777709960938 2 547.808239 1093.60193 0.42397 0.00023226 -0.43096 -0.00023608 -0.0069876 -3.8279E-06 547.808003800245 97.902 0.65427 97.902 97.605 98.26 0 30 18 2 0 0 0 0.11219 1 19143 19143 51.63 1.6968 1 1771700 27134 6144 18037 18043 26747 26747 0.058868789289590495 LLDVRSKWEY 10 Unmodified _LLDVRSKWEY_ 0 0 0 nc|ENSG00000127952|Q9Y6J8-5|STYXL1;STYXL1|p.I161Lfs*25|1|0.06|ENSG00000127952|chr7:76005378-76005378|G/-|frameshift_variant;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1;nc|ENSG00000127952|Q9Y6J8-4|STYXL1 nc|ENSG00000127952|Q9Y6J8-5|STYXL1 nc|ENSG00000127952|Q9Y6J8-5|STYXL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2169189453125 3 436.903072 1307.68739 0.16285 7.1151E-05 -0.47235 -0.00020637 -0.3095 -0.00013522 436.90288475036107 115.16 0.50242 110.6 110.29 110.8 -4.555 17 13 2 0 0 0 0.75985 1 22132 22132 2.6312 0.37851 1 892890 27135 3498 18038 18044 26748 26748 0.04585044114628545 LLDVSCSLES 10 Unmodified _LLDVSCSLES_ 0 0 0 REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1 REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28369140625 2 533.260265 1064.50598 0.19481 0.00010389 -2.0764 -0.0011072 -1.8816 -0.0010034 533.7606365975204 110.38 0.66556 105.89 105.59 106.25 -4.4915 28 18 2 0 0 0 0.71778 1 21246 21246 9.3831 9.3831 1 1238600 + 27136 15551 18039 18045 26749 26749 -0.023696369734580003 LLDWGSLPHHV 11 Unmodified _LLDWGSLPHHV_ 0 0 0 nc|ENSG00000164616|Q9UKT6|FBXL21P nc|ENSG00000164616|Q9UKT6|FBXL21P nc|ENSG00000164616|Q9UKT6|FBXL21P MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2486572265625 3 425.227779 1272.66151 -0.21869 -9.2994E-05 -0.52094 -0.00022152 -0.73964 -0.00031451 425.2276399953503 64.329 0.55529 64.329 63.994 64.549 0 31 15 3 0 0 0 0.60461 1 12374 12374 17.863 0 1 2903300 27137 12426 18040 18046 26750 26750 0.03608194662979258 LLDWGSLPHHV 11 Unmodified _LLDWGSLPHHV_ 0 0 0 nc|ENSG00000164616|Q9UKT6|FBXL21P nc|ENSG00000164616|Q9UKT6|FBXL21P nc|ENSG00000164616|Q9UKT6|FBXL21P MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 425.227779 1272.66151 -0.19012 -8.0845E-05 -0.43367 -0.00018441 -0.62379 -0.00026525 425.22759411352024 67.417 0.51886 64.308 64.037 64.556 -3.1086 -0.028319 0.00025484 NaN 17.863 38 14 4 NaN NaN NaN NaN 0 NaN NaN 0 3508900 27138 12426 18040 18046 0.03608194662979258 LLDWGSLPHHV 11 Unmodified _LLDWGSLPHHV_ 0 0 0 nc|ENSG00000164616|Q9UKT6|FBXL21P nc|ENSG00000164616|Q9UKT6|FBXL21P nc|ENSG00000164616|Q9UKT6|FBXL21P MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 425.227779 1272.66151 0.051719 2.1992E-05 -0.62058 -0.00026389 -0.56886 -0.0002419 425.22754231699207 67.664 0.65654 64.337 64.003 64.66 -3.3268 0.00084686 1.6398E-05 NaN 17.863 48 18 4 NaN NaN NaN NaN 0 NaN NaN 0 3425200 27139 12426 18040 18046 0.03608194662979258 LLEAFGRRQN 10 Unmodified _LLEAFGRRQN_ 0 0 0 ENST00000477714.1_1_22:45706022-45724091:+|nuORF;FAM118A|p.R346Tfs*7|1|0.31|ENSG00000100376|chr22:45336385-45336386|-/A|frameshift_variant;ENSG00000100376|ENST00000441876|FAM118A ENST00000477714.1_1_22:45706022-45724091:+|nuORF ENST00000477714.1_1_22:45706022-45724091:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2772216796875 2 602.333279 1202.652 NaN NaN NaN NaN NaN NaN NaN 150.74 1 146 145.5 146.5 -4.7323 0 0 0 0.22588 1 29941 29941 10.074 3.3508 1 27140 1966 18041 18047 26751 26751 0.05878426377489632 LLEAGWQNL 9 Unmodified _LLEAGWQNL_ 0 0 0 ENST00000591583.1_1_17:40717502-40717634:+|nuORF;ENST00000591753.1_2_17:40715869-40717983:+|nuORF;ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY ENST00000591583.1_1_17:40717502-40717634:+|nuORF ENST00000591583.1_1_17:40717502-40717634:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2695922851562 2 522.279649 1042.54475 -0.12053 -6.2948E-05 0.64211 0.00033536 0.52159 0.00027241 522.2798767458386 126.73 0.77013 122.11 121.73 122.5 -4.6172 45 21 3 0 0 0 0.13832 1 24965 24965 14.987 7.5095 1 3638600 27141 1401 18042 18048 26752 26752 0.025174564432063562 LLEAILDPY 9 Unmodified _LLEAILDPY_ 0 0 0 REV__DPEP1|p.R330K|1|0.05|ENSG00000015413|chr16:89637895-89637895|G/A|missense_variant REV__DPEP1|p.R330K|1|0.05|ENSG00000015413|chr16:89637895-89637895|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6883544921875 2 523.792058 1045.56956 NaN NaN NaN NaN NaN NaN NaN 81.948 1 78.108 77.608 78.608 -3.8392 0 0 0 0.23508 1 15562 15562 8.5933 0.43775 1 + 27142 13743 18043 18049 26753 26753 0.04860091525961252 LLEASRAF 8 Unmodified _LLEASRAF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75506591796875 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 156.43 1 151.64 151.14 152.14 -4.7885 0 0 0 0.21486 1 31106 31106 10.183 0.83596 1 27143 6002 18044 18050 26754 26754 0.040538022430382625 LLEDKNKLI 9 Unmodified _LLEDKNKLI_ 0 0 0 DRC1|p.W618Gfs*19|1|0.36|ENSG00000157856|chr2:26453477-26453477|C/-|frameshift_variant;ENSG00000157856|ENST00000288710|DRC1 DRC1|p.W618Gfs*19|1|0.36|ENSG00000157856|chr2:26453477-26453477|C/-|frameshift_variant DRC1|p.W618Gfs*19|1|0.36|ENSG00000157856|chr2:26453477-26453477|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.53826904296875 3 362.557013 1084.64921 -0.37096 -0.00013449 0.48949 0.00017747 0.11853 4.2973E-05 362.5572097677348 18.089 0.35501 16.778 16.58 16.935 -1.3109 14 9 2 0 0 0 0.46598 1 2921 2921 0.40827 0 1 352980 27144 887 18045 18051 26755 26755 0.11027158199954101 LLEEHAKLQA 10 Unmodified _LLEEHAKLQA_ 0 0 0 ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3325805664062 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 71.762 1 68.134 67.634 68.634 -3.6275 0 0 0 0.22588 1 13541 13541 6.2058 0.47393 1 27145 7015 18046 18052 26756 26756 0.06533086051808823 LLEERSPL 8 Unmodified _LLEERSPL_ 0 0 0 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72576904296875 2 478.7742 955.533846 0.35562 0.00017026 -0.32751 -0.0001568 0.02811 1.3458E-05 478.77396228738235 72.127 0.631 68.589 68.116 68.747 -3.5385 18 17 2 0 0 0 0.78482 1 13614 13614 25.399 0 1 1012400 27146 1119 18047 18053 26757 26757 0.054300540689382615 LLEESPSTQQN 11 Unmodified _LLEESPSTQQN_ 0 0 0 REV__MCOLN3|p.M47Hfs*5|1|0.35|ENSG00000055732|chr1:85045223-85045224|-/A|frameshift_variant REV__MCOLN3|p.M47Hfs*5|1|0.35|ENSG00000055732|chr1:85045223-85045224|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7661743164062 2 623.301507 1244.58846 0.26673 0.00016625 0.94726 0.00059043 1.214 0.00075668 623.302275784671 130.25 0.87836 125.41 125.01 125.89 -4.8355 46 24 3 0 0 0 0.59056 1 25025 25025 29.841 0 1 4507500 + 27147 14117 18048 18054 26758 26758 -0.024050236409493664 LLEGSSILCF 10 Unmodified _LLEGSSILCF_ 0 0 0 ENST00000447750.6_1_X:153671038-153671296:+|nuORF ENST00000447750.6_1_X:153671038-153671296:+|nuORF ENST00000447750.6_1_X:153671038-153671296:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2833251953125 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 74.834 1 71.24 70.74 71.74 -3.594 0 0 0 0.22526 1 14218 14218 21.747 1.293 1 27148 9952 18049 18055 26759 26759 0.015478476484986459 LLEHQPLE 8 Unmodified _LLEHQPLE_ 0 0 0 REV__VCX|p.P90L|1|0.16|ENSG00000182583|chrX:7843664-7843664|C/T|missense_variant REV__VCX|p.P90L|1|0.16|ENSG00000182583|chrX:7843664-7843664|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26556396484375 2 489.766374 977.518196 -0.28812 -0.00014111 2.041 0.0009996 1.7528 0.00085848 489.76903924495264 84.041 0.10756 80.33 80.238 80.346 -3.7117 4 2 2 0 0 0 8448 1 16050 16050 0.68139 0.42991 1 542450 + 27149 25534 18050 18056 26760 26760 0.02853767551891906 LLEIFPAGP 9 Unmodified _LLEIFPAGP_ 0 0 0 REV__nc|ENSG00000167925|Q8N2G8-2|GHDC REV__nc|ENSG00000167925|Q8N2G8-2|GHDC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73846435546875 2 478.776211 955.537869 NaN NaN NaN NaN NaN NaN NaN 122.68 1 118.13 117.63 118.63 -4.5476 0 0 0 0.23411 1 24185 24185 13.508 0 1 + 27150 17980 18051 18057 26761 26761 0.05832143562656711 LLEKEILFY 9 Unmodified _LLEKEILFY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 584.3029174804688 2 584.336633 1166.65871 0.49005 0.00028636 -0.2097 -0.00012253 0.28036 0.00016382 584.3365295842401 164.48 0.2076 159.42 159.31 159.51 -5.0648 8 5 2 0 0 0 0.44262 1 32078 32078 23.148 3.7094 1 6267700 27151 4958 18052 18058 26762 26762 0.08204926485473152 LLEKEILFY 9 Unmodified _LLEKEILFY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 584.336633 1166.65871 0.48097 0.00028105 -2.8762 -0.0016806 -2.3952 -0.0013996 584.3348444298609 164.48 0.17342 159.43 159.31 159.49 -5.0446 0.0083831 -0.002249 NaN 23.148 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 4786900 27152 4958 18052 18058 0.08204926485473152 LLEKELLFF 9 Unmodified _LLEKELLFF_ 0 0 0 ENST00000495874.5_1_1:43220834-43223503:-|nuORF;ENST00000460031.5_1_1:43220834-43232642:-|nuORF;nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1 ENST00000495874.5_1_1:43220834-43223503:-|nuORF ENST00000495874.5_1_1:43220834-43223503:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3374633789062 2 576.339175 1150.6638 NaN NaN NaN NaN NaN NaN NaN 29.381 1 29.381 28.881 29.881 0 0 0 0 0.23508 1 5249 5249 7.9102 2.1783 1 27153 2981 18053 18059 26763 26763 0.09449230348081983 LLEKPLKK 8 Unmodified _LLEKPLKK_ 0 0 0 REV__nc|ENSG00000108306|Q96IG2-2|FBXL20 REV__nc|ENSG00000108306|Q96IG2-2|FBXL20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 484.57049560546875 2 484.828778 967.643003 NaN NaN NaN NaN NaN NaN NaN 12.317 1 12.317 11.817 12.817 0 0 0 0 0.2396 1 1708 1708 0.0082765 0 1 + 27154 15113 18054 18060 26764 26764 0.1578868475909303 LLEKRETQA 9 Unmodified _LLEKRETQA_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.779052734375 2 544.308938 1086.60332 0.55672 0.00030303 -0.44012 -0.00023956 0.11661 6.347E-05 544.3087620010908 82.619 0.65405 82.619 82.255 82.909 0 33 18 2 0 0 0 0.56623 1 16054 16054 34.402 25.019 1 10005000 27155 5053 18055 18061 26765 26765 0.06348513017701407 LLEKRQRKKRL 11 Unmodified _LLEKRQRKKRL_ 0 0 0 nc|ENSG00000078246|O75386-3|TULP3;ENSG00000078246|ENST00000448120|TULP3;nc|ENSG00000078246|O75386-2|TULP3 nc|ENSG00000078246|O75386-3|TULP3 nc|ENSG00000078246|O75386-3|TULP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.275634765625 3 489.991326 1466.95215 NaN NaN NaN NaN NaN NaN NaN 156.72 1 156.72 156.22 157.22 0 0 0 0 0.23698 1 31444 31444 0.094841 0 1 27156 1574 18056 18062 26766 26766 0.2373513837885639 LLEMARRKY 9 Unmodified _LLEMARRKY_ 0 0 0 REV__ENST00000306634.3_1_9:111389208-111389427:+|nuORF REV__ENST00000306634.3_1_9:111389208-111389427:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2537231445312 2 590.336975 1178.6594 NaN NaN NaN NaN NaN NaN NaN 88.753 1 88.753 88.253 89.253 0 0 0 0 0.23508 1 17325 17325 8.5933 1.304 1 + 27157 20441 18057 18063 26767 26767 0.07721442653541999 LLEMVDLP 8 Unmodified _LLEMVDLP_ 0 0 0 tr|U7T1Y0|U7T1Y0_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00630PE=3SV=1 tr|U7T1Y0|U7T1Y0_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00630PE=3SV=1 tr|U7T1Y0|U7T1Y0_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00630PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25384521484375 2 465.254254 928.493955 NaN NaN NaN NaN NaN NaN NaN 148.48 1 148.48 147.98 148.98 0 0 0 0 0.21486 1 29717 29717 5.7604 0 1 27158 26333 18058 18064 26768 26768 0.026847910740116276 LLEPFVHQV 9 Unmodified _LLEPFVHQV_ 0 0 0 nc|ENSG00000068745|Q9UHH9-6|IP6K2;nc|ENSG00000068745|Q9UHH9-3|IP6K2;nc|ENSG00000068745|Q9UHH9-2|IP6K2;nc|ENSG00000068745|Q9UHH9-4|IP6K2;nc|ENSG00000068745|Q9UHH9-5|IP6K2;ENSG00000068745|ENST00000328631|IP6K2 nc|ENSG00000068745|Q9UHH9-6|IP6K2 nc|ENSG00000068745|Q9UHH9-6|IP6K2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2646484375 2 541.305667 1080.59678 0.30307 0.00016406 -0.46492 -0.00025166 -0.16185 -8.7609E-05 541.3052774232584 131.88 1.2183 131.88 131.15 132.37 0 53 34 2 0 0 0 0.071486 2 26046 26029;26046 51.415 45.024 1 6548900 27159 12233 18059 18065 26769;26770 26770 0.059706198569983826 LLEPFVHQV 9 Unmodified _LLEPFVHQV_ 0 0 0 nc|ENSG00000068745|Q9UHH9-6|IP6K2;nc|ENSG00000068745|Q9UHH9-3|IP6K2;nc|ENSG00000068745|Q9UHH9-2|IP6K2;nc|ENSG00000068745|Q9UHH9-4|IP6K2;nc|ENSG00000068745|Q9UHH9-5|IP6K2;ENSG00000068745|ENST00000328631|IP6K2 nc|ENSG00000068745|Q9UHH9-6|IP6K2 nc|ENSG00000068745|Q9UHH9-6|IP6K2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.28271484375 2 541.305667 1080.59678 0.22312 0.00012078 -0.27491 -0.00014881 -0.051796 -2.8037E-05 541.3054794334817 136.2 0.90901 131.56 131.11 132.02 -4.6399 57 25 3 0 0 0 0.041554 2 26854 26796;26854 74.929 32.834 1 8152000 27160 12233 18059 18065 26771;26772 26772 0.059706198569983826 LLEPFVHQV 9 Unmodified _LLEPFVHQV_ 0 0 0 nc|ENSG00000068745|Q9UHH9-6|IP6K2;nc|ENSG00000068745|Q9UHH9-3|IP6K2;nc|ENSG00000068745|Q9UHH9-2|IP6K2;nc|ENSG00000068745|Q9UHH9-4|IP6K2;nc|ENSG00000068745|Q9UHH9-5|IP6K2;ENSG00000068745|ENST00000328631|IP6K2 nc|ENSG00000068745|Q9UHH9-6|IP6K2 nc|ENSG00000068745|Q9UHH9-6|IP6K2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2803344726562 2 541.305667 1080.59678 0.11813 6.3946E-05 -0.21156 -0.00011452 -0.093426 -5.0572E-05 541.305683434231 136.36 1.2238 131.47 131 132.22 -4.8951 73 34 4 0 0 0 0.029716 4 26241 26169;26241;26253;26256 81.89 39.796 1 7184900 27161 12233 18059 18065 26773;26774;26775;26776 26774 0.059706198569983826 LLEPFVHQV 9 Unmodified _LLEPFVHQV_ 0 0 0 nc|ENSG00000068745|Q9UHH9-6|IP6K2;nc|ENSG00000068745|Q9UHH9-3|IP6K2;nc|ENSG00000068745|Q9UHH9-2|IP6K2;nc|ENSG00000068745|Q9UHH9-4|IP6K2;nc|ENSG00000068745|Q9UHH9-5|IP6K2;ENSG00000068745|ENST00000328631|IP6K2 nc|ENSG00000068745|Q9UHH9-6|IP6K2 nc|ENSG00000068745|Q9UHH9-6|IP6K2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2848510742188 2 541.305667 1080.59678 0.31305 0.00016946 -0.26721 -0.00014464 0.045841 2.4814E-05 541.3054825155584 136.44 0.95828 131.61 131.09 132.05 -4.8307 65 26 3 0 0 0 0.07738 1 26249 26249 62.573 20.478 1 6004100 27162 12233 18059 18065 26777 26777 0.059706198569983826 LLEPLVQLK 9 Unmodified _LLEPLVQLK_ 0 0 0 REV__nc|ENSG00000184347|O75094-3|SLIT3 REV__nc|ENSG00000184347|O75094-3|SLIT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 526.639404296875 2 526.839342 1051.66413 0.35256 0.00018574 -0.27812 -0.00014652 0.074443 3.922E-05 526.8391478341206 144.46 1.1496 139.51 138.92 140.07 -4.9445 89 32 4 0 0 0 0.84208 1 27781 27781 7.2892 0 1 26232000 + 27163 18892 18060 18066 26778 26778 0.14036650067919254 LLERETSEGVK 11 Unmodified _LLERETSEGVK_ 0 0 0 REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7794799804688 2 630.843342 1259.67213 NaN NaN NaN NaN NaN NaN NaN 75.795 1 72.072 71.572 72.572 -3.7227 0 0 0 0.23018 1 14340 14340 8.1555 0.54658 1 + 27164 18588 18061 18067 26779 26779 0.05268132526748559 LLERPQECV 9 Unmodified _LLERPQECV_ 0 0 0 REV__ENSG00000196860|ENST00000360945|TOMM20L REV__ENSG00000196860|ENST00000360945|TOMM20L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7803344726562 2 543.784241 1085.55393 0.74768 0.00040658 -1.4756 -0.00080242 -0.72794 -0.00039584 543.7835739386302 102.22 1.5705 102.22 101.33 102.9 0 122 44 4 0 0 0 0.58804 1 19963 19963 13.906 0.86358 1 22701000 + 27165 19284 18062 18068 26780 26780 0.0145748173724769 LLERQRRRQQR 11 Unmodified _LLERQRRRQQR_ 0 0 0 REV__nc|ENSG00000135622|O95754-2|SEMA4F REV__nc|ENSG00000135622|O95754-2|SEMA4F MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 514.0802612304688 3 513.641468 1537.90257 NaN NaN NaN NaN NaN NaN NaN 170.79 1 166 165.5 166.5 -4.7898 0 0 0 0.22632 1 34685 34685 0.094841 0 1 + 27166 16280 18063 18069 26781 26781 0.15513823422770656 LLETKWSFLQE 11 Unmodified _LLETKWSFLQE_ 0 0 0 ENSG00000161849|ENST00000257951|KRT84;CON__Q9NSB2;CON__Q6ISB0 ENSG00000161849|ENST00000257951|KRT84 ENSG00000161849|ENST00000257951|KRT84 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25042724609375 3 465.250249 1392.72892 NaN NaN NaN NaN NaN NaN NaN 111.89 1 107.47 106.97 107.97 -4.4231 0 0 0 0.22632 1 22050 22050 0.172 0 1 + 27167 700 18064 18070 26782 26782 0.04826180083273357 LLETLSEYEIV 11 Unmodified _LLETLSEYEIV_ 0 0 0 nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;ADAMTS9|p.L487*|1|0.4|ENSG00000163638|chr3:64651020-64651020|A/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF;ADAMTS9|p.C1222Lfs*15|1|0.3|ENSG00000163638|chr3:64604004-64604004|C/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;ADAMTS9|p.S1884Ffs*2|1|0.35|ENSG00000163638|chr3:64533233-64533233|G/-|frameshift_variant nc|ENSG00000163638|Q9P2N4-4|ADAMTS9 nc|ENSG00000163638|Q9P2N4-4|ADAMTS9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2281799316406 3 436.902626 1307.68605 -0.14714 -6.4288E-05 0.78243 0.00034184 0.63528 0.00027756 436.90288228567937 114.99 0.51725 110.52 110.33 110.84 -4.4726 22 14 2 0 0 0 0.72919 2 22695 22695;22700 9.7643 3.8961 1 1164200 27168 5451 18065 18071 26783;26784 26783 0.04451365235195226 LLETLSEYEIV 11 Unmodified _LLETLSEYEIV_ 0 0 0 nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;ADAMTS9|p.L487*|1|0.4|ENSG00000163638|chr3:64651020-64651020|A/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF;ADAMTS9|p.C1222Lfs*15|1|0.3|ENSG00000163638|chr3:64604004-64604004|C/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;ADAMTS9|p.S1884Ffs*2|1|0.35|ENSG00000163638|chr3:64533233-64533233|G/-|frameshift_variant nc|ENSG00000163638|Q9P2N4-4|ADAMTS9 nc|ENSG00000163638|Q9P2N4-4|ADAMTS9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 436.902626 1307.68605 0.35113 0.00015341 0.53467 0.0002336 0.8858 0.00038701 437.23720023386414 114.85 0.52049 110.54 110.24 110.76 -4.3136 -0.015867 -0.00010583 NaN 9.7643 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 827790 27169 5451 18065 18071 0.04451365235195226 LLETMLSK 8 Unmodified _LLETMLSK_ 0 0 0 REV__ENST00000436471.2_1_17:20385129-20386047:-|nuORF REV__ENST00000436471.2_1_17:20385129-20386047:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.134765625 3 312.180778 933.520504 NaN NaN NaN NaN NaN NaN NaN 91.56 1 87.752 87.252 88.252 -3.8083 0 0 0 0.21486 1 17531 17531 3.5965 0 1 + 27170 21671 18066 18072 26785 26785 0.05108479965349488 LLETVKKFMA 10 Unmodified _LLETVKKFMA_ 0 0 0 ENSG00000151422|ENST00000281092|FER;ENST00000502752.1_1_5:108133871-108177539:+|nuORF;FER|p.I432Lfs*16|1|0.32|ENSG00000151422|chr5:108946186-108946186|A/-|frameshift_variant;FER|p.K476Nfs*53|4|0.22|ENSG00000151422|chr5:108954821-108954821|A/-|frameshift_variant ENSG00000151422|ENST00000281092|FER ENSG00000151422|ENST00000281092|FER MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.276123046875 2 590.343935 1178.67332 NaN NaN NaN NaN NaN NaN NaN 158.85 1 153.58 153.08 154.08 -5.2712 0 0 0 0.22588 1 30821 30821 10.824 0.75 1 27171 4866 18067 18073 26786 26786 0.0911267536196192 LLEVLYKYY 9 Unmodified _LLEVLYKYY_ 0 0 0 REV__tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1 REV__tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3008422851562 2 602.336633 1202.65871 NaN NaN NaN NaN NaN NaN NaN 87.165 1 87.165 86.665 87.665 0 0 0 0 0.23508 1 17013 17013 4.756 0.81161 1 + 27172 25002 18068 18074 26787 26787 0.06548926485493212 LLEYDKENLNK 11 Unmodified _LLEYDKENLNK_ 0 0 0 REV__ENST00000467842.1_1_3:133494266-133496087:+|nuORF REV__ENST00000467842.1_1_3:133494266-133496087:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2436828613281 3 460.245275 1377.714 NaN NaN NaN NaN NaN NaN NaN 80.546 1 77.036 76.536 77.536 -3.5102 0 0 0 0.22632 1 15730 15730 1.4074 0 1 + 27173 14573 18069 18075 26788 26788 0.040246882152587204 LLFCHLLC 8 Unmodified _LLFCHLLC_ 0 0 0 REV__ENST00000401766.6_2_17:28545150-28545855:-|nuORF REV__ENST00000401766.6_2_17:28545150-28545855:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2540588378906 2 481.253534 960.492515 NaN NaN NaN NaN NaN NaN NaN 149.84 1 144.72 144.22 145.22 -5.1204 0 0 0 0.21486 1 29036 29036 6.3541 0 1 + 27174 21361 18070 18076 26789 26789 0.010688785042702875 LLFFLPEIM 9 Unmodified _LLFFLPEIM_ 0 0 0 ENST00000579991.2_1_17:56167288-56167468:+|nuORF ENST00000579991.2_1_17:56167288-56167468:+|nuORF ENST00000579991.2_1_17:56167288-56167468:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2141418457031 3 374.88044 1121.61949 -1.9078 -0.0007152 1.0706 0.00040136 -0.83716 -0.00031383 374.8808875373034 18.027 0.41807 16.513 16.363 16.781 -1.5148 22 11 3 0 0 0 0.64461 1 2689 2689 0.12781 0 1 1266600 27175 11489 18071 18077 26790 26790 0.0635450293023041 LLFFPFFY 8 Unmodified _LLFFPFFY_ 0 0 0 ENST00000299964.3_1_11:114166574-114166922:+|nuORF ENST00000299964.3_1_11:114166574-114166922:+|nuORF ENST00000299964.3_1_11:114166574-114166922:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.782958984375 2 547.291497 1092.56844 0.51902 0.00028405 2.24 0.0012259 2.759 0.00151 547.2925021419654 107.28 0.61488 107.28 106.9 107.51 0 25 17 2 0 0 0 0.67903 1 21136 21136 17.087 0 1 1828000 27176 8539 18072 18078 26791 26791 0.0258592194772973 LLFHVIQLL 9 Unmodified _LLFHVIQLL_ 0 0 0 REV__ENSG00000112996|ENST00000507110|MRPS30 REV__ENSG00000112996|ENST00000507110|MRPS30 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7861938476562 2 548.349877 1094.6852 0.39493 0.00021656 0.90007 0.00049355 1.295 0.00071012 548.3505245234151 164.89 0.13467 160.1 159.99 160.13 -4.7898 5 3 2 0 0 0 0.51974 1 32969 32969 0.87518 0.19379 1 15283000 + 27177 15324 18073 18079 26792 26792 0.14164660167489274 LLFITPPP 8 Unmodified _LLFITPPP_ 0 0 0 ENST00000233813.4_1_2:217560055-217560226:-|nuORF ENST00000233813.4_1_2:217560055-217560226:-|nuORF ENST00000233813.4_1_2:217560055-217560226:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.12158203125 2 449.275847 896.537141 -0.18563 -8.3398E-05 0.39525 0.00017758 0.20962 9.4179E-05 449.27597651092356 45.149 0.48893 42.37 42.135 42.624 -2.7793 23 13 2 0 0 0 1.0244 1 8238 8238 0.79363 0 1 1482400 27178 8166 18074 18080 26793 26793 0.08473348913605605 LLFITPPP 8 Unmodified _LLFITPPP_ 0 0 0 ENST00000233813.4_1_2:217560055-217560226:-|nuORF ENST00000233813.4_1_2:217560055-217560226:-|nuORF ENST00000233813.4_1_2:217560055-217560226:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 449.275847 896.537141 0.43636 0.00019605 -0.1331 -5.9799E-05 0.30326 0.00013625 449.27575225707335 42.031 0.48878 42.031 41.76 42.249 0 -0.24197 -0.00042039 NaN 0.79363 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1891600 27179 8166 18074 18080 0.08473348913605605 LLFITPPP 8 Unmodified _LLFITPPP_ 0 0 0 ENST00000233813.4_1_2:217560055-217560226:-|nuORF ENST00000233813.4_1_2:217560055-217560226:-|nuORF ENST00000233813.4_1_2:217560055-217560226:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 449.275847 896.537141 -0.11653 -5.2352E-05 0.57846 0.00025989 0.46194 0.00020754 449.2760382452147 45.181 0.43239 42.391 42.167 42.599 -2.79 0.11758 0.00021899 NaN 0.79363 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2157100 27180 8166 18074 18080 0.08473348913605605 LLFITPPP 8 Unmodified _LLFITPPP_ 0 0 0 ENST00000233813.4_1_2:217560055-217560226:-|nuORF ENST00000233813.4_1_2:217560055-217560226:-|nuORF ENST00000233813.4_1_2:217560055-217560226:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.275847 896.537141 -0.071142 -3.1963E-05 0.50017 0.00022471 0.42903 0.00019275 449.27601254728376 45.166 0.46418 42.301 42.055 42.52 -2.8653 0.027595 0.00014864 NaN 0.79363 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1644500 27181 8166 18074 18080 0.08473348913605605 LLFKKFEY 8 Unmodified _LLFKKFEY_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78076171875 2 544.312961 1086.61137 1.379 0.0007506 1.3782 0.00075015 2.7571 0.0015008 544.3138662872982 25.434 0.28122 23.786 23.649 23.931 -1.6482 11 7 2 0 0 0 1.0147 1 4444 4444 5.2307 0 1 343370 + 27182 15726 18075 18081 26794 26794 0.07152692005138306 LLFKRFISR 9 Unmodified _LLFKRFISR_ 0 0 0 REV__HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant REV__HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2660522460938 2 590.371675 1178.7288 NaN NaN NaN NaN NaN NaN NaN 133.93 1 129.05 128.55 129.55 -4.8726 0 0 0 0.19624 1 25731 25731 0.0033805 0 1 + 27183 17161 18076 18082 26795 26795 0.14658269664596446 LLFLIAVIKKI 11 Unmodified _LLFLIAVIKKI_ 0 0 0 REV__tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1 REV__tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 424.29986572265625 3 424.300215 1269.87882 NaN NaN NaN NaN NaN NaN NaN 137.66 1 132.82 132.32 133.32 -4.84 0 0 0 0.23698 1 26524 26524 0.094841 0 1 + 27184 25149 18077 18083 26796 26796 0.25467196883687393 LLFLLSWRVG 10 Unmodified _LLFLLSWRVG_ 0 0 0 ENST00000382357.3_1_21:34400498-34400627:+|nuORF ENST00000382357.3_1_21:34400498-34400627:+|nuORF ENST00000382357.3_1_21:34400498-34400627:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 401.8880310058594 3 401.913131 1202.71756 -0.32312 -0.00012986 0.51825 0.00020829 0.19513 7.8427E-05 401.91321541441465 59.086 0.88737 59.086 58.581 59.468 0 52 24 4 0 0 0 0.50781 1 11252 11252 0.043787 0 1 6742800 27185 9341 18078 18084 26797 26797 0.12431447570429555 LLFLLSWRVG 10 Unmodified _LLFLLSWRVG_ 0 0 0 ENST00000382357.3_1_21:34400498-34400627:+|nuORF ENST00000382357.3_1_21:34400498-34400627:+|nuORF ENST00000382357.3_1_21:34400498-34400627:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 401.913131 1202.71756 0.12527 5.0349E-05 -0.056828 -2.284E-05 0.068446 2.7509E-05 401.9130737318387 62.559 0.62963 59.187 58.882 59.511 -3.3723 0.052951 -0.00037926 NaN 0.043787 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 9550900 27186 9341 18078 18084 0.12431447570429555 LLFLLSWRVG 10 Unmodified _LLFLLSWRVG_ 0 0 0 ENST00000382357.3_1_21:34400498-34400627:+|nuORF ENST00000382357.3_1_21:34400498-34400627:+|nuORF ENST00000382357.3_1_21:34400498-34400627:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 401.913131 1202.71756 -0.29638 -0.00011912 0.51638 0.00020754 0.22 8.8421E-05 401.91323797359956 62.339 0.93771 59.099 58.724 59.661 -3.2395 -0.034719 0.00031188 NaN 0.043787 56 26 4 NaN NaN NaN NaN 0 NaN NaN 0 6263700 27187 9341 18078 18084 0.12431447570429555 LLFLRENI 8 Unmodified _LLFLRENI_ 0 0 0 ENSG00000170893|ENST00000302649|TRH ENSG00000170893|ENST00000302649|TRH ENSG00000170893|ENST00000302649|TRH MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 509.3078308105469 2 509.30821 1016.60187 NaN NaN NaN NaN NaN NaN NaN 155.9 1 150.65 150.15 151.15 -5.2526 0 0 0 0.23487 1 30234 30234 0.25148 0 1 27188 6110 18079 18085 26798 26798 0.09422923719591836 LLFLRITYC 9 Unmodified _LLFLRITYC_ 0 0 0 REV__ENST00000412139.6_1_7:86792572-86792851:+|nuORF REV__ENST00000412139.6_1_7:86792572-86792851:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2194519042969 3 381.219455 1140.63654 -0.20488 -7.8105E-05 0.14541 5.5431E-05 -0.059477 -2.2674E-05 381.21952229661053 32.032 0.51712 29.883 29.654 30.171 -2.1483 21 14 2 0 0 0 0.64121 1 5567 5567 0.0033805 0 1 787690 + 27189 21431 18080 18086 26799 26799 0.0718442353604587 LLFLVQGAHGR 11 Unmodified _LLFLVQGAHGR_ 0 0 0 ADGRG1|p.G309Vfs*14|1|0.34|ENSG00000205336|chr16:57655899-57655899|G/-|frameshift_variant;nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF ADGRG1|p.G309Vfs*14|1|0.34|ENSG00000205336|chr16:57655899-57655899|G/-|frameshift_variant ADGRG1|p.G309Vfs*14|1|0.34|ENSG00000205336|chr16:57655899-57655899|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 607.863037109375 2 605.85639 1209.69823 0.58829 0.00035642 -1.028 -0.00062281 -0.43969 -0.00026639 605.8556721613337 165.05 0.51996 160.1 159.87 160.39 -4.9484 51 14 6 0 0 0 0.60996 1 32214 32214 0.2986 0 1 477130000 27190 79 18081 18087 26800 26800 0.10176491279548827 LLFPSHPAV 9 Unmodified _LLFPSHPAV_ 0 0 0 REV__ENSG00000116016|ENST00000263734|EPAS1 REV__ENSG00000116016|ENST00000263734|EPAS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2716369628906 2 490.781828 979.549102 -0.010173 -4.9927E-06 0.42263 0.00020742 0.41245 0.00020242 490.7819997508626 136.14 0.57556 131.31 130.95 131.52 -4.8307 26 15 2 0 0 0 0.53499 1 26170 26170 0.87518 0 1 2878500 + 27191 15461 18082 18088 26801 26801 0.05850965656804874 LLFQLKAQY 9 Unmodified _LLFQLKAQY_ 0 0 0 REV__ENST00000225719.8_1_17:28791842-28791956:+|nuORF REV__ENST00000225719.8_1_17:28791842-28791956:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2208251953125 3 375.221853 1122.64373 NaN NaN NaN NaN NaN NaN NaN 119.11 1 119.11 118.61 119.61 0 0 0 0 0.23508 1 23465 23465 5.7319 1.5423 1 + 27192 20046 18083 18089 26802 26802 0.08731479408129417 LLFSSGLII 9 Unmodified _LLFSSGLII_ 0 0 0 REV__VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant REV__VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.765625 2 481.799686 961.584819 0.08249 3.9744E-05 0.41509 0.00019999 0.49758 0.00023974 481.7998600886053 64.114 0.48588 61.116 60.839 61.325 -2.9975 20 13 2 0 0 0 0.52414 1 12415 12415 18.135 0 1 1674400 + 27193 16123 18084 18090 26803 26803 0.10249003113824529 LLFYHLAVA 9 Unmodified _LLFYHLAVA_ 0 0 0 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6787719726562 2 523.805303 1045.59605 NaN NaN NaN NaN NaN NaN NaN 61.211 1 57.971 57.471 58.471 -3.2395 0 0 0 0.23048 1 11455 11455 14.582 3.087 1 + 27194 12964 18085 18091 26804 26804 0.07507825207949281 LLGAKEYSTAV 11 Unmodified _LLGAKEYSTAV_ 0 0 0 nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000463652.5_1_1:1635130-1635691:-|nuORF;ENST00000356937.7_1_1:1634348-1635645:-|nuORF nc|ENSG00000248333|P21127|CDK11B nc|ENSG00000248333|P21127|CDK11B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3202514648438 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 173.21 1 168.33 167.83 168.83 -4.881 0 0 0 0.22632 1 34422 34422 0.03141 0 1 27195 1037 18086 18092 26805 26805 0.05410263957674033 LLGAKSTLEY 10 Unmodified _LLGAKSTLEY_ 0 0 0 REV__ENST00000498171.5_1_22:20077477-20097628:+|nuORF REV__ENST00000498171.5_1_22:20077477-20097628:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.78955078125 2 547.808239 1093.60193 0.35379 0.00019381 -0.2515 -0.00013778 0.10229 5.6033E-05 547.8081895743832 102.02 0.71519 97.697 97.364 98.08 -4.3208 37 20 3 0 0 0 0.11647 1 19545 19545 55.503 2.0987 1 1389300 + 27196 15914 18087 18093 26806 26806 0.058868789289590495 LLGAKSTLEY 10 Unmodified _LLGAKSTLEY_ 0 0 0 REV__ENST00000498171.5_1_22:20077477-20097628:+|nuORF REV__ENST00000498171.5_1_22:20077477-20097628:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.79248046875 2 547.808239 1093.60193 0.53057 0.00029065 -0.34584 -0.00018945 0.18473 0.0001012 547.8079956084154 101.76 0.65398 97.741 97.425 98.079 -4.0212 29 18 2 0 0 0 0.33865 1 19573 19573 34.932 1.4872 1 1525400 + 27197 15914 18087 18093 26807 26807 0.058868789289590495 LLGCWEVV 8 Unmodified _LLGCWEVV_ 0 0 0 ENST00000482831.1_1_2:230450587-230451634:-|nuORF ENST00000482831.1_1_2:230450587-230451634:-|nuORF ENST00000482831.1_1_2:230450587-230451634:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24200439453125 2 459.741314 917.468075 -0.11634 -5.3488E-05 0.38638 0.00017763 0.27003 0.00012414 459.7414211923907 84.241 2.1503 80.577 79.741 81.892 -3.6641 112 61 2 0 0 0 0.73426 1 16364 16364 9.3474 0 1 3560400 27198 10403 18088 18094 26808 26808 0.006039416223984517 LLGDADQEKY 10 Unmodified _LLGDADQEKY_ 0 0 0 ENSG00000268629|ENST00000600991|TEX13A ENSG00000268629|ENST00000600991|TEX13A ENSG00000268629|ENST00000600991|TEX13A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3117065429688 2 576.282586 1150.55062 NaN NaN NaN NaN NaN NaN NaN 131.17 1 126.53 126.03 127.03 -4.6359 0 0 0 0.22588 1 25849 25849 7.2892 0.56607 1 27199 7996 18089 18095 26809 26809 -0.018634898357504426 LLGEADRV 8 Unmodified _LLGEADRV_ 0 0 0 tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1 tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1 tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2152404785156 2 436.745442 871.476331 NaN NaN NaN NaN NaN NaN NaN 131.3 1 131.3 130.8 131.8 0 0 0 0 0.20895 1 25960 25960 18.146 1.0335 1 27200 26264 18090 18096 26810 26810 0.035452118633770624 LLGGGGVY 8 Unmodified _LLGGGGVY_ 0 0 0 nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 nc|ENSG00000143183|Q9UM00-2|TMCO1 nc|ENSG00000143183|Q9UM00-2|TMCO1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 368.21435546875 2 368.205421 734.39629 NaN NaN NaN NaN NaN NaN NaN 88.401 1 84.406 83.906 84.906 -3.9953 0 0 0 0.22722 1 16839 16839 0.62683 0.61855 1 27201 12362 18091 18097 26811 26811 0.018467702601810743 LLGHRWVTGD 10 Unmodified _LLGHRWVTGD_ 0 0 0 REV__ENST00000493548.5_1_6:32122153-32123690:+|nuORF REV__ENST00000493548.5_1_6:32122153-32123690:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 577.2177734375 2 577.309272 1152.60399 NaN NaN NaN NaN NaN NaN NaN 166.31 1 161.33 160.83 161.83 -4.9811 0 0 0 2.8426 1 32588 32588 0.043787 0 1 + 27202 22350 18092 18098 26812 26812 0.03379352457409368 LLGIGPGKVQP 11 Unmodified _LLGIGPGKVQP_ 0 0 0 REV__ENSG00000177465|ENST00000326303|ACOT4 REV__ENSG00000177465|ENST00000326303|ACOT4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21319580078125 3 360.225486 1077.65463 NaN NaN NaN NaN NaN NaN NaN 59.996 1 57.063 56.563 57.563 -2.9333 0 0 0 0.22632 1 11540 11540 0.0059557 0 1 + 27203 18559 18093 18099 26813 26813 0.11890881782437646 LLGLAQGLDVP 11 Unmodified _LLGLAQGLDVP_ 0 0 0 REV__ZNF18|p.H426Sfs*40|1|0.31|ENSG00000154957|chr17:11978331-11978332|-/A|frameshift_variant REV__ZNF18|p.H426Sfs*40|1|0.31|ENSG00000154957|chr17:11978331-11978332|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7694091796875 2 548.324057 1094.63356 0.083839 4.5971E-05 0.53817 0.00029509 0.62201 0.00034106 548.8256435387449 135.76 0.57703 130.87 130.57 131.14 -4.8951 24 15 2 0 0 0 0.92792 1 26110 26110 5.2969 0 1 2357600 + 27204 17204 18094 18100 26814 26814 0.09002871682901059 LLGLYEQLA 9 Unmodified _LLGLYEQLA_ 0 0 0 REV__ENSG00000167208|ENST00000330943|SNX20 REV__ENSG00000167208|ENST00000330943|SNX20 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 509.79986572265625 2 510.292225 1018.5699 0.20725 0.00010576 -2.2194 -0.0011325 -2.0122 -0.0010268 510.79337224608474 151.88 0.5771 151.88 151.65 152.23 0 21 15 2 0 0 0 0.54058 1 30458 30458 12.241 0 1 1459700 + 27205 17910 18095 18101 26815 26815 0.06135511245804537 LLGLYEQLA 9 Unmodified _LLGLYEQLA_ 0 0 0 REV__ENSG00000167208|ENST00000330943|SNX20 REV__ENSG00000167208|ENST00000330943|SNX20 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 510.292225 1018.5699 0.043887 2.2395E-05 -1.9208 -0.00098016 -1.8769 -0.00095777 510.2911368148019 156.66 0.57053 151.87 151.7 152.27 -4.7885 -0.15742 8.1821E-05 NaN 12.241 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1393600 + 27206 17910 18095 18101 0.06135511245804537 LLGLYEQLA 9 Unmodified _LLGLYEQLA_ 0 0 0 REV__ENSG00000167208|ENST00000330943|SNX20 REV__ENSG00000167208|ENST00000330943|SNX20 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 510.292225 1018.5699 -0.25823 -0.00013177 -2.0186 -0.0010301 -2.2769 -0.0011619 510.29107159644195 157.4 0.63347 152.12 151.9 152.53 -5.2854 0.08689 -1.8029E-05 NaN 12.241 32 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2095000 + 27207 17910 18095 18101 0.06135511245804537 LLGPPPVGV 9 Unmodified _LLGPPPVGV_ 0 0 0 nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1 nc|ENSG00000148337|Q9ULV3-5|CIZ1 nc|ENSG00000148337|Q9ULV3-5|CIZ1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2527770996094 2 424.765646 847.516739 0.097886 4.1579E-05 0.12062 5.1237E-05 0.21851 9.2816E-05 424.76564674217684 131.38 1.4733 131.38 130.65 132.13 0 98 41 3 0 0 0 0.03148 1 25857 25857 79.935 51.761 1 26100000 27208 563 18096 18102 26816 26816 0.08688178253805745 LLGPPPVGV 9 Unmodified _LLGPPPVGV_ 0 0 0 nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1 nc|ENSG00000148337|Q9ULV3-5|CIZ1 nc|ENSG00000148337|Q9ULV3-5|CIZ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.23675537109375 2 424.765646 847.516739 -0.14122 -5.9987E-05 0.31568 0.00013409 0.17445 7.4102E-05 424.7656991564423 136.06 1.4013 131.42 130.77 132.17 -4.6399 114 39 4 0 0 0 0.14006 1 26721 26721 56.048 35.177 1 27793000 27209 563 18096 18102 26817 26817 0.08688178253805745 LLGPPPVGV 9 Unmodified _LLGPPPVGV_ 0 0 0 nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1 nc|ENSG00000148337|Q9ULV3-5|CIZ1 nc|ENSG00000148337|Q9ULV3-5|CIZ1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 424.765646 847.516739 0.029633 1.2587E-05 0.16428 6.9782E-05 0.19392 8.2369E-05 424.76565506365824 136.51 1.4344 131.62 130.92 132.36 -4.8951 0.11207 -4.9411E-05 NaN 79.935 115 40 4 NaN NaN NaN NaN 0 NaN NaN 0 29866000 27210 563 18096 18102 0.08688178253805745 LLGPPPVGV 9 Unmodified _LLGPPPVGV_ 0 0 0 nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1 nc|ENSG00000148337|Q9ULV3-5|CIZ1 nc|ENSG00000148337|Q9ULV3-5|CIZ1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 424.765646 847.516739 -0.048149 -2.0452E-05 0.33768 0.00014344 0.28953 0.00012298 424.76571380677024 136.44 1.5454 131.61 130.81 132.35 -4.8307 0.099987 9.7899E-05 NaN 79.935 127 43 4 NaN NaN NaN NaN 0 NaN NaN 0 26714000 27211 563 18096 18102 0.08688178253805745 LLGPRLVLA 9 Unmodified _LLGPRLVLA_ 0 0 0 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 477.84619140625 2 476.32112 950.627687 -0.11174 -5.3226E-05 0.079111 3.7682E-05 -0.032633 -1.5544E-05 476.3211333031885 144.46 1.8352 144.46 143.97 145.8 0 163 52 5 0 0 0 0.24143 1 28915 28915 18.614 15.731 1 541590000 27212 6061 18097 18103 26818 26818 0.15039817961894641 LLGQPGVQ 8 Unmodified _LLGQPGVQ_ 0 0 0 REV__ENSG00000157045|ENST00000287706|NTAN1 REV__ENSG00000157045|ENST00000287706|NTAN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3834838867188 1 811.467229 810.459953 0.28131 0.00022828 0.22474 0.00018237 0.50606 0.00041065 811.467528209906 92.104 0.33768 88.295 88.174 88.512 -3.8083 11 9 2 0 0 0 0.64227 1 17683 17683 19.439 0 1 984460 + 27213 17278 18098 18104 26819 26819 0.04714130697288965 LLGQRPSQV 9 Unmodified _LLGQRPSQV_ 0 0 0 REV__nc|nan|Q8N9H9-2|C1orf127 REV__nc|nan|Q8N9H9-2|C1orf127 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.9990539550781 3 333.197819 996.571629 -0.47245 -0.00015742 -0.68106 -0.00022693 -1.1535 -0.00038435 333.19767070873985 41.267 0.27831 38.632 38.432 38.71 -2.6348 10 7 2 0 0 0 0.88284 1 7711 7711 0.96228 0 1 321010 + 27214 18465 18099 18105 26820 26820 0.07320565054430972 LLGRLLIY 8 Unmodified _LLGRLLIY_ 0 0 0 nc|ENSG00000146350|Q96NH3-4|TBC1D32;TBC1D32|p.K717Nfs*29|1|0.1|ENSG00000146350|chr6:121242207-121242207|T/-|frameshift_variant;TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant;TBC1D32|p.F1022Sfs*5|1|0.3|ENSG00000146350|chr6:121113166-121113166|A/-|frameshift_variant;ENSG00000146350|ENST00000398212|TBC1D32 nc|ENSG00000146350|Q96NH3-4|TBC1D32 nc|ENSG00000146350|Q96NH3-4|TBC1D32 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.245361328125 2 480.81567 959.616788 -0.071562 -3.4408E-05 0.26736 0.00012855 0.1958 9.4143E-05 480.8158493772715 57.739 0.52906 54.829 54.604 55.133 -2.9105 20 14 2 0 0 0 1.0244 1 11131 11131 6.3541 3.4649 1 800380 27215 12370 18100 18106 26821 26821 0.13536415587623196 LLGTLHNLY 9 Unmodified _LLGTLHNLY_ 0 0 0 nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA nc|ENSG00000164944|Q69YN4-4|VIRMA nc|ENSG00000164944|Q69YN4-4|VIRMA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27197265625 2 522.297842 1042.58113 NaN NaN NaN NaN NaN NaN NaN 132.32 1 127.46 126.96 127.96 -4.8527 0 0 0 0.23411 1 25416 25416 13.508 2.3934 1 27216 5579 18101 18107 26822 26822 0.06154333339964069 LLHAGGLARA 10 Unmodified _LLHAGGLARA_ 0 0 0 ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant;ENSG00000225968|ENST00000424383|ELFN1 ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2591552734375 2 489.795801 977.577048 0.093411 4.5752E-05 0.45638 0.00022353 0.54979 0.00026929 489.7957846197985 46.21 0.38055 43.345 43.172 43.553 -2.8653 17 10 2 0 0 0 0.47611 2 8378 8378;8381 18.146 2.546 1 993150 27217 936 18102 18108 26823;26824 26823 0.08736288636885092 LLHAGGLARA 10 Unmodified _LLHAGGLARA_ 0 0 0 ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant;ENSG00000225968|ENST00000424383|ELFN1 ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2590637207031 2 489.795801 977.577048 -0.34563 -0.00016929 0.72495 0.00035508 0.37933 0.00018579 489.7962543728164 46.134 0.40949 43.267 43.097 43.507 -2.8666 14 11 2 0 0 0 0.61964 1 8377 8377 18.146 1.2041 1 567780 27218 936 18102 18108 26825 26825 0.08736288636885092 LLHAMVLLKL 10 Unmodified _LLHAMVLLKL_ 0 0 0 TICAM1|p.P642Hfs*50|6|0.25|ENSG00000127666|chr19:4816453-4816453|G/-|frameshift_variant;ENSG00000127666|ENST00000248244|TICAM1 TICAM1|p.P642Hfs*50|6|0.25|ENSG00000127666|chr19:4816453-4816453|G/-|frameshift_variant TICAM1|p.P642Hfs*50|6|0.25|ENSG00000127666|chr19:4816453-4816453|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3240356445312 2 575.872662 1149.73077 0.19939 0.00011482 -2.069 -0.0011915 -1.8696 -0.0010767 576.3725730012931 144.09 0.44775 139.03 138.66 139.11 -5.0671 13 12 2 0 0 0 0.75487 1 27752 27752 4.3292 1.594 1 3709000 27219 3489 18103 18109 26826 26826 0.1618956235818132 LLHAQRIQ 8 Unmodified _LLHAQRIQ_ 0 0 0 REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2675476074219 2 489.795801 977.577048 0.093411 4.5752E-05 0.45638 0.00022353 0.54979 0.00026929 489.7957846197985 46.21 0.38055 43.345 43.172 43.553 -2.8653 17 10 2 0 0 0 0.71273 1 8369 8369 12.532 0 1 993150 + 27220 23209 18104 18110 26827 26827 0.08736288636896461 LLHARLRTAT 10 Unmodified _LLHARLRTAT_ 0 0 0 PSMD3|p.F230L|1|0.39|ENSG00000108344|chr17:39989742-39989742|C/A|missense_variant PSMD3|p.F230L|1|0.39|ENSG00000108344|chr17:39989742-39989742|C/A|missense_variant PSMD3|p.F230L|1|0.39|ENSG00000108344|chr17:39989742-39989742|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.316162109375 2 576.354014 1150.69348 NaN NaN NaN NaN NaN NaN NaN 83.693 1 80.085 79.585 80.585 -3.6079 0 0 0 0.22588 1 16362 16362 3.9444 0.66309 1 27221 12840 18105 18111 26828 26828 0.12415607136813378 LLHAWRERA 9 Unmodified _LLHAWRERA_ 0 0 0 REV__ENST00000480340.1_1_1:153904922-153905273:-|nuORF REV__ENST00000480340.1_1_1:153904922-153905273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3234252929688 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 174.82 1 169.93 169.43 170.43 -4.8916 0 0 0 0.19634 1 34817 34817 0.029283 0 1 + 27222 21904 18106 18112 26829 26829 0.06666764931219404 LLHCRPAP 8 Unmodified _LLHCRPAP_ 0 0 0 REV__ENST00000268607.9_1_16:87425503-87425911:+|nuORF REV__ENST00000268607.9_1_16:87425503-87425911:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7531433105469 2 453.752547 905.490542 NaN NaN NaN NaN NaN NaN NaN 109.1 1 109.1 108.6 109.6 0 0 0 0 0.21486 1 21450 21450 6.3541 0 1 + 27223 20263 18107 18113 26830 26830 0.03401585810672714 LLHDGIPVV 9 Unmodified _LLHDGIPVV_ 0 0 0 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7685852050781 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 117.93 1 117.93 117.43 118.43 0 0 0 0 0.12288 1 23231 23231 34.102 3.8776 1 27224 179 18108 18114 26831 26831 0.07734948311224343 LLHDGIPVV 9 Unmodified _LLHDGIPVV_ 0 0 0 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7870178222656 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 122.24 1 117.69 117.19 118.19 -4.5476 0 0 0 0.12288 1 24097 24097 34.102 1.797 1 27225 179 18108 18114 26832 26832 0.07734948311224343 LLHDGIPVV 9 Unmodified _LLHDGIPVV_ 0 0 0 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7868957519531 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 122.26 1 117.58 117.08 118.08 -4.6873 0 0 0 0.052972 1 23476 23476 50.855 18.738 1 27226 179 18108 18114 26833 26833 0.07734948311224343 LLHDGIPVV 9 Unmodified _LLHDGIPVV_ 0 0 0 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78692626953125 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 122.5 1 117.82 117.32 118.32 -4.6873 0 0 0 0.079869 1 23525 23525 42.095 3.9434 1 27227 179 18108 18114 26834 26834 0.07734948311224343 LLHDGIPVV 9 Unmodified _LLHDGIPVV_ 0 0 0 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7870788574219 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 122.22 1 117.69 117.19 118.19 -4.5305 0 0 0 0.079869 1 23529 23529 42.095 3.9434 1 27228 179 18108 18114 26835 26835 0.07734948311224343 LLHDGIPVV 9 Unmodified _LLHDGIPVV_ 0 0 0 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1 APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78729248046875 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 122.52 1 117.99 117.49 118.49 -4.5305 0 0 0 0.20628 1 23585 23585 21.747 1.293 1 27229 179 18108 18114 26836 26836 0.07734948311224343 LLHEDHTP 8 Unmodified _LLHEDHTP_ 0 0 0 REV__nc|ENSG00000175344|P36544-2|CHRNA7 REV__nc|ENSG00000175344|P36544-2|CHRNA7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2422790527344 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 95.127 1 90.936 90.436 91.436 -4.1911 0 0 0 0.21323 1 18153 18153 14.582 1.0738 1 + 27230 18473 18109 18115 26837 26837 -0.015319761420073519 LLHEKIRDAYT 11 Unmodified _LLHEKIRDAYT_ 0 0 0 ENSG00000164163|ENST00000296577|ABCE1;ENST00000431492.2_1_1:192216230-192216602:-|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.751953125 3 453.585743 1357.7354 0.59622 0.00027044 -0.84513 -0.00038334 -0.24891 -0.0001129 453.5853297982684 46.653 0.55811 46.653 46.315 46.873 0 34 15 3 0 0 0 0.96068 1 8761 8761 8.7518 3.2285 1 2239600 27231 5516 18110 18116 26838 26838 0.07084118034663334 LLHFKCCV 8 Unmodified _LLHFKCCV_ 0 0 0 REV__ENST00000349824.8_1_7:50470526-50470820:+|nuORF REV__ENST00000349824.8_1_7:50470526-50470820:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77703857421875 2 481.751159 961.487764 NaN NaN NaN NaN NaN NaN NaN 156.4 1 151.12 150.62 151.62 -5.2854 0 0 0 0.21486 1 30342 30342 5.7604 0.52976 1 + 27232 20765 18111 18117 26839 26839 0.005479943615000593 LLHGHIVEL 9 Unmodified _LLHGHIVEL_ 0 0 0 ENSG00000119927|ENST00000348367|GPAM ENSG00000119927|ENST00000348367|GPAM ENSG00000119927|ENST00000348367|GPAM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.86517333984375 3 344.206315 1029.59712 -0.23446 -8.0703E-05 0.16706 5.7504E-05 -0.067397 -2.3199E-05 344.2064097421774 96.586 1.041 92.488 92.076 93.117 -4.0978 53 29 3 0 0 0 0.12755 1 18915 18915 42.232 36.04 1 4341100 27233 3107 18112 18118 26840 26840 0.08350039576839663 LLHGHIVEL 9 Unmodified _LLHGHIVEL_ 0 0 0 ENSG00000119927|ENST00000348367|GPAM ENSG00000119927|ENST00000348367|GPAM ENSG00000119927|ENST00000348367|GPAM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.86492919921875 3 344.206315 1029.59712 0.13022 4.4821E-05 -0.081701 -2.8122E-05 0.048515 1.6699E-05 344.2062784117523 96.759 0.96397 92.524 91.985 92.949 -4.2348 52 27 3 0 0 0 0.1428 1 18442 18442 31.728 25.337 1 4235900 27234 3107 18112 18118 26841 26841 0.08350039576839663 LLHGLLPAH 9 Unmodified _LLHGLLPAH_ 0 0 0 ENSG00000147324|ENST00000276282|MFHAS1 ENSG00000147324|ENST00000276282|MFHAS1 ENSG00000147324|ENST00000276282|MFHAS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.19976806640625 3 324.199272 969.575986 NaN NaN NaN NaN NaN NaN NaN 63.849 1 60.434 59.934 60.933 -3.4158 0 0 0 0.23508 1 11938 11938 1.1933 0 1 27235 4697 18113 18119 26842 26842 0.08998074267981337 LLHGPPGA 8 Unmodified _LLHGPPGA_ 0 0 0 REV__ENST00000496676.5_1_1:6268943-6270476:+|nuORF REV__ENST00000496676.5_1_1:6268943-6270476:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2171936035156 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 15.971 1 14.755 14.255 15.255 -1.2159 0 0 0 0.2396 1 2490 2490 0.30703 0 1 + 27236 22392 18114 18120 26843 26843 0.03337878871366229 LLHGPPGA 8 Unmodified _LLHGPPGA_ 0 0 0 REV__ENST00000496676.5_1_1:6268943-6270476:+|nuORF REV__ENST00000496676.5_1_1:6268943-6270476:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2173156738281 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 16.034 1 14.68 14.18 15.18 -1.3534 0 0 0 0.2396 1 2250 2250 0.30703 0 1 + 27237 22392 18114 18120 26844 26844 0.03337878871366229 LLHHHYHS 8 Unmodified _LLHHHYHS_ 0 0 0 DNTTIP2|p.V350_H351insTLLHHHY|1|0.03|ENSG00000067334|chr1:93876884-93876885|-/GTAGTGATGATGAAGAAGAGT|inframe_insertion DNTTIP2|p.V350_H351insTLLHHHY|1|0.03|ENSG00000067334|chr1:93876884-93876885|-/GTAGTGATGATGAAGAAGAGT|inframe_insertion DNTTIP2|p.V350_H351insTLLHHHY|1|0.03|ENSG00000067334|chr1:93876884-93876885|-/GTAGTGATGATGAAGAAGAGT|inframe_insertion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2612915039062 2 522.262125 1042.5097 -0.23019 -0.00012022 -1.2264 -0.00064048 -1.4566 -0.0007607 522.2615124794752 83.045 0.80602 79.438 79.027 79.833 -3.6079 43 22 2 0 0 0 0.72231 1 16290 16290 11.114 0.29054 1 3433700 27238 879 18115 18121 26845 26845 -0.009857415740725628 LLHHRFIYRHK 11 Unmodified _LLHHRFIYRHK_ 0 0 0 ENST00000471102.1_1_10:46281927-46282167:+|nuORF ENST00000471102.1_1_10:46281927-46282167:+|nuORF ENST00000471102.1_1_10:46281927-46282167:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.2952575683594 3 507.29675 1518.86842 NaN NaN NaN NaN NaN NaN NaN 102.84 1 98.656 98.156 99.156 -4.1861 0 0 0 0.22632 1 20218 20218 0.00056442 0 1 27239 10207 18116 18122 26846 26846 0.12974027001814648 LLHISFEA 8 Unmodified _LLHISFEA_ 0 0 0 REV__IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant REV__IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2590026855469 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 123.8 1 119.21 118.71 119.71 -4.5926 0 0 0 0.21486 1 23827 23827 5.7604 0 1 + 27240 14426 18117 18123 26847 26847 0.034706863857991266 LLHKIKLP 8 Unmodified _LLHKIKLP_ 0 0 0 REV__APC|p.K1454Lfs*20|1|0.81|ENSG00000134982|chr5:112839952-112839953|-/TT|frameshift_variant REV__APC|p.K1454Lfs*20|1|0.81|ENSG00000134982|chr5:112839952-112839953|-/TT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7770690917969 2 481.331488 960.648422 NaN NaN NaN NaN NaN NaN NaN 147.35 1 142.67 142.17 143.17 -4.6868 0 0 0 0.2396 1 29235 29235 0.0082765 0 1 + 27241 13082 18118 18124 26848 26848 0.16652408341542468 LLHKLFIVI 9 Unmodified _LLHKLFIVI_ 0 0 0 REV__ENST00000473813.1_1_21:40581899-40585438:-|nuORF REV__ENST00000473813.1_1_21:40581899-40585438:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7801513671875 2 548.36807 1094.72159 0.073293 4.0192E-05 1.2955 0.00071043 1.3688 0.00075062 548.3697539685012 133.84 0.13979 128.96 128.85 128.99 -4.8726 5 3 2 0 0 0 0.85699 1 25697 25697 0.6015 0.6015 1 1157600 + 27242 22075 18119 18125 26849 26849 0.17801537064156037 LLHLFSSY 8 Unmodified _LLHLFSSY_ 0 0 0 REV__nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1 REV__nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2637634277344 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 70.916 1 67.449 66.949 67.949 -3.467 0 0 0 0.22934 1 13435 13435 1.7423 0.8671 1 + 27243 23989 18120 18126 26850 26850 0.027349729028514957 LLHLIIPQV 9 Unmodified _LLHLIIPQV_ 0 0 0 REV__tr|U7SSR0|U7SSR0_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01540PE=3SV=1 REV__tr|U7SSR0|U7SSR0_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01540PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6963500976562 2 523.342052 1044.66955 NaN NaN NaN NaN NaN NaN NaN 166.95 1 162.05 161.55 162.55 -4.8916 0 0 0 0.23508 1 32767 32767 12.532 7.7755 1 + 27244 25063 18121 18127 26851 26851 0.14900373650402798 LLHLLSLP 8 Unmodified _LLHLLSLP_ 0 0 0 ENST00000261254.7_1_12:4383006-4383090:+|nuORF ENST00000261254.7_1_12:4383006-4383090:+|nuORF ENST00000261254.7_1_12:4383006-4383090:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7689514160156 2 453.294571 904.574589 1.0612 0.00048102 -0.80925 -0.00036683 0.25191 0.00011419 453.2941926430291 25.932 0.37587 24.284 24.071 24.447 -1.6482 18 10 2 0 0 0 0.83982 1 4570 4570 2.5775 0 1 1387400 27245 8293 18122 18128 26852 26852 0.11848440179221598 LLHMPQLHY 9 Unmodified _LLHMPQLHY_ 0 0 0 REV__ENSG00000182544|ENST00000329548|MFSD5 REV__ENSG00000182544|ENST00000329548|MFSD5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3390502929688 2 576.305144 1150.59573 NaN NaN NaN NaN NaN NaN NaN 89.583 1 85.806 85.306 86.306 -3.7779 0 0 0 0.23048 1 17148 17148 14.582 3.7578 1 + 27246 18784 18123 18129 26853 26853 0.02646082216438117 LLHMSEDDWD 10 Unmodified _LLHMSEDDWD_ 0 0 0 ENSG00000204228|ENST00000374662|HSD17B8 ENSG00000204228|ENST00000374662|HSD17B8 ENSG00000204228|ENST00000374662|HSD17B8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7785034179688 2 630.763703 1259.51285 NaN NaN NaN NaN NaN NaN NaN 75.32 1 71.597 71.097 72.097 -3.7227 0 0 0 0.22588 1 14245 14245 4.3292 0.73274 1 27247 7566 18124 18130 26854 26854 -0.1065232409289365 LLHPEEEEPS 10 Unmodified _LLHPEEEEPS_ 0 0 0 REV__CCT8L2|p.I552Sfs*4|2|0.37|ENSG00000198445|chr22:16590897-16590897|T/-|frameshift_variant REV__CCT8L2|p.I552Sfs*4|2|0.37|ENSG00000198445|chr22:16590897-16590897|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.257568359375 2 590.280043 1178.54553 NaN NaN NaN NaN NaN NaN NaN 85.379 1 81.715 81.215 82.215 -3.6641 0 0 0 0.22544 1 16691 16691 19.257 2.1441 1 + 27248 13320 18125 18131 26855 26855 -0.03659793698375324 LLHPHNTPH 9 Unmodified _LLHPHNTPH_ 0 0 0 REV__nc|ENSG00000106009|Q6PJG6-3|BRAT1 REV__nc|ENSG00000106009|Q6PJG6-3|BRAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.281982421875 2 533.283057 1064.55156 0.10612 5.659E-05 -0.51746 -0.00027595 -0.41134 -0.00021936 533.7844442979363 34.931 0.34073 34.931 34.759 35.099 0 20 9 3 0 0 0 0.49624 1 6436 6436 0.40827 0 1 1050700 + 27249 23994 18126 18132 26856 26856 0.021868141144750552 LLHPWVVL 8 Unmodified _LLHPWVVL_ 0 0 0 REV__LONRF3|p.V169Rfs*11|1|0.49|ENSG00000175556|chrX:118975280-118975281|-/C|frameshift_variant REV__LONRF3|p.V169Rfs*11|1|0.49|ENSG00000175556|chrX:118975280-118975281|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 488.80316162109375 2 488.802563 975.590573 NaN NaN NaN NaN NaN NaN NaN 123.81 1 119.24 118.74 119.74 -4.5757 0 0 0 0.23294 1 24410 24410 0.12286 0 1 + 27250 23805 18127 18133 26857 26857 0.1018014641613263 LLHQQAKF 8 Unmodified _LLHQQAKF_ 0 0 0 nc|ENSG00000012223|P02788-2|LTF;ENSG00000012223|ENST00000231751|LTF nc|ENSG00000012223|P02788-2|LTF nc|ENSG00000012223|P02788-2|LTF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 492.78399658203125 2 492.784902 983.55525 NaN NaN NaN NaN NaN NaN NaN 117.12 1 112.54 112.04 113.04 -4.5815 0 0 0 0.22934 1 22473 22473 0.68139 0 1 27251 1087 18128 18134 26858 26858 0.06281483888324146 LLHRKNKNQ 9 Unmodified _LLHRKNKNQ_ 0 0 0 L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|102|2|sense L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|102|2|sense L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|102|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3153076171875 2 575.843813 1149.67307 0.3987 0.00022959 -1.1065 -0.00063718 -0.70781 -0.00040759 575.8430280591883 154.83 2.5682 149.58 147.54 150.11 -5.2527 156 72 3 0 0 0 0.74257 1 30125 30125 4.3292 1.0479 1 6641300 27252 12056 18129 18135 26859 26859 0.10422436476960684 LLHRQYYT 8 Unmodified _LLHRQYYT_ 0 0 0 nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 nc|ENSG00000163104|Q9H4L7-3|SMARCAD1 nc|ENSG00000163104|Q9H4L7-3|SMARCAD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7927856445312 2 547.293091 1092.57163 0.13242 7.2475E-05 1.5449 0.0008455 1.6773 0.00091797 547.294006173697 105.34 0.87115 100.96 100.39 101.26 -4.3764 41 24 2 0 0 0 0.71273 1 20243 20243 12.532 1.7076 1 3804100 27253 5400 18130 18136 26860 26860 0.029045650544276214 LLHSLPCFI 9 Unmodified _LLHSLPCFI_ 0 0 0 ENSG00000047621|ENST00000261250|C12orf4;ENST00000535030.1_1_12:4643313-4645372:-|nuORF ENSG00000047621|ENST00000261250|C12orf4 ENSG00000047621|ENST00000261250|C12orf4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2723388671875 2 521.791338 1041.56812 -0.46182 -0.00024097 -3.74 -0.0019515 -4.2018 -0.0021925 521.7895926429379 86.369 0.10539 82.419 82.366 82.472 -3.9503 4 2 2 0 0 0 0.50294 1 16436 16436 19.439 2.4967 1 990340 27254 1219 18131 18137 26861 26861 0.04900178956199852 LLHTKTVLP 9 Unmodified _LLHTKTVLP_ 0 0 0 REV__ENSG00000007202|ENST00000528896|BLTP2 REV__ENSG00000007202|ENST00000528896|BLTP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 511.3257751464844 2 511.32386 1020.63317 NaN NaN NaN NaN NaN NaN NaN 165.43 1 160.64 160.14 161.14 -4.7898 0 0 0 0.14817 1 33132 33132 1.6919 0 1 + 27255 13884 18132 18138 26862 26862 0.12367496753699925 LLIDEDHMQF 10 Unmodified _LLIDEDHMQF_ 0 0 0 REV__ENST00000391783.6_3_19:53304828-53321258:-|nuORF REV__ENST00000391783.6_3_19:53304828-53321258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7542114257812 2 630.800088 1259.58562 NaN NaN NaN NaN NaN NaN NaN 132.25 1 127.45 126.95 127.95 -4.799 0 0 0 0.22588 1 25459 25459 4.3292 0 1 + 27256 21201 18133 18139 26863 26863 -0.033785702994691746 LLIDEDYY 8 Unmodified _LLIDEDYY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2687377929688 2 522.250223 1042.48589 NaN NaN NaN NaN NaN NaN NaN 134.38 1 134.38 133.88 134.88 0 0 0 0 0.21486 1 26600 26600 11.114 0.93107 1 27257 2862 18134 18140 26864 26864 -0.03365064641752724 LLIDEDYY 8 Unmodified _LLIDEDYY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2611694335938 2 522.250223 1042.48589 NaN NaN NaN NaN NaN NaN NaN 134.42 1 134.42 133.92 134.92 0 0 0 0 0.21486 1 26609 26609 11.114 0.31496 1 27258 2862 18134 18140 26865 26865 -0.03365064641752724 LLIDMYYL 8 Unmodified _LLIDMYYL_ 0 0 0 REV__tr|U7STL6|U7STL6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01532PE=4SV=1 REV__tr|U7STL6|U7STL6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01532PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2794189453125 2 522.277729 1042.54091 NaN NaN NaN NaN NaN NaN NaN 82.474 1 78.6 78.1 79.1 -3.8736 0 0 0 0.21323 1 15672 15672 14.582 3.7578 1 + 27259 25113 18135 18141 26866 26866 0.02133650625160044 LLIFDAYVSY 10 Unmodified _LLIFDAYVSY_ 0 0 0 REV__ENSG00000187701|ENST00000460972|OR2T27 REV__ENSG00000187701|ENST00000460972|OR2T27 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2745971679688 2 602.31844 1202.62233 NaN NaN NaN NaN NaN NaN NaN 80.489 1 76.979 76.479 77.479 -3.5102 0 0 0 0.22588 1 15719 15719 11.64 1.5664 1 + 27260 19104 18136 18142 26867 26867 0.029120495887582365 LLIIISITFKL 11 Unmodified _LLIIISITFKL_ 0 0 0 REV__tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1 REV__tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2552490234375 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 148.71 1 143.65 143.15 144.15 -5.0595 0 0 0 0.23698 1 28807 28807 0.50596 0.34663 1 + 27261 25388 18137 18143 26868 26868 0.21658900267107128 LLIIRVLLKV 10 Unmodified _LLIIRVLLKV_ 0 0 0 ENSG00000152207|ENST00000682523|CYSLTR2 ENSG00000152207|ENST00000682523|CYSLTR2 ENSG00000152207|ENST00000682523|CYSLTR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2675170898438 2 590.431202 1178.84785 NaN NaN NaN NaN NaN NaN NaN 137.46 1 132.82 132.32 133.32 -4.6413 0 0 0 2.8426 1 27130 27130 0 0 1 27262 4907 18138 18144 26869 26869 0.2655804356943463 LLIIRVLLKV 10 Unmodified _LLIIRVLLKV_ 0 0 0 ENSG00000152207|ENST00000682523|CYSLTR2 ENSG00000152207|ENST00000682523|CYSLTR2 ENSG00000152207|ENST00000682523|CYSLTR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2675170898438 2 590.431202 1178.84785 NaN NaN NaN NaN NaN NaN NaN 137.48 1 132.84 132.34 133.34 -4.6413 0 0 0 0.22588 1 27133 27133 0 0 1 27263 4907 18138 18144 26870 26870 0.2655804356943463 LLIKCHLKLY 10 Unmodified _LLIKCHLKLY_ 0 0 0 nc|ENSG00000205494|A6NMU1|OR52A4P nc|ENSG00000205494|A6NMU1|OR52A4P nc|ENSG00000205494|A6NMU1|OR52A4P MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.768310546875 2 622.383394 1242.75224 NaN NaN NaN NaN NaN NaN NaN 115.69 1 111.22 110.72 111.72 -4.4726 0 0 0 0.22588 1 22809 22809 11.64 3.7301 1 27264 12564 18139 18145 26871 26871 0.14056947386916363 LLIKNILLLV 10 Unmodified _LLIKNILLLV_ 0 0 0 REV__ENST00000428210.5_1_2:61719906-61720176:-|nuORF REV__ENST00000428210.5_1_2:61719906-61720176:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3256225585938 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 89.346 1 85.302 84.802 85.802 -4.0443 0 0 0 2.8426 1 17023 17023 0 0 1 + 27265 21587 18140 18146 26872 26872 0.23594648441235222 LLIKNILLLV 10 Unmodified _LLIKNILLLV_ 0 0 0 REV__ENST00000428210.5_1_2:61719906-61720176:-|nuORF REV__ENST00000428210.5_1_2:61719906-61720176:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.339111328125 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 89.36 1 85.316 84.816 85.816 -4.0443 0 0 0 0.22588 1 17025 17025 1.8442 0 1 + 27266 21587 18140 18146 26873 26873 0.23594648441235222 LLIKTIIF 8 Unmodified _LLIKTIIF_ 0 0 0 REV__ENST00000395957.6_3_8:101931757-101931823:-|nuORF REV__ENST00000395957.6_3_8:101931757-101931823:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24285888671875 2 480.828246 959.64194 0.036653 1.7624E-05 0.0017778 8.5484E-07 0.03843 1.8478E-05 480.82819007414656 93.677 0.61447 89.687 89.351 89.966 -3.9907 25 17 2 0 0 0 0.89646 1 18385 18385 0.30703 0.24304 1 2070900 + 27267 21272 18141 18147 26874 26874 0.16050470390200644 LLIKTIIF 8 Unmodified _LLIKTIIF_ 0 0 0 REV__ENST00000395957.6_3_8:101931757-101931823:-|nuORF REV__ENST00000395957.6_3_8:101931757-101931823:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2430114746094 2 480.828246 959.64194 0.028878 1.3886E-05 0.17942 8.6268E-05 0.20829 0.00010015 480.828331885247 106.71 0.37785 102.3 102.13 102.51 -4.4121 13 10 2 0 0 0 1.0244 1 20445 20445 0.79363 0 1 667330 + 27268 21272 18141 18147 26875 26875 0.16050470390200644 LLIKVLRKVY 10 Unmodified _LLIKVLRKVY_ 0 0 0 REV__ENSG00000120063|ENST00000439174|GNA13 REV__ENSG00000120063|ENST00000439174|GNA13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7763671875 2 622.926283 1243.83801 NaN NaN NaN NaN NaN NaN NaN 99.13 1 94.997 94.497 95.497 -4.1326 0 0 0 0.22588 1 19468 19468 4.3292 1.0479 1 + 27269 15608 18142 18148 26876 26876 0.22584855564082318 LLIKVLRKVY 10 Unmodified _LLIKVLRKVY_ 0 0 0 REV__ENSG00000120063|ENST00000439174|GNA13 REV__ENSG00000120063|ENST00000439174|GNA13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7628784179688 2 622.926283 1243.83801 0.99615 0.00062053 3.3607 0.0020935 4.3568 0.002714 623.4309790164389 99.591 0.10561 95.459 95.405 95.511 -4.1326 4 2 2 0 0 0 0.91046 1 19571 19571 4.3292 3.8709 1 751660 + 27270 15608 18142 18148 26877 26877 0.22584855564082318 LLILILKLF 9 Unmodified _LLILILKLF_ 0 0 0 ENST00000569650.1_1_7:72469123-72470067:-|nuORF;ENST00000359898.5_7:74299379-74304447:-|nuORF;nc|ENSG00000205583|P0CL83|STAG3L1 ENST00000569650.1_1_7:72469123-72470067:-|nuORF ENST00000569650.1_1_7:72469123-72470067:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7782592773438 2 543.388471 1084.76239 0.65579 0.00035635 2.4791 0.0013471 3.1349 0.0017035 543.8920382162266 102.9 0.11078 98.879 98.809 98.92 -4.0212 4 2 2 0 0 0 0.63929 1 19782 19782 0.073264 0.073264 1 903830 27271 9007 18143 18149 26878 26878 0.2233987838376379 LLILILLIKK 10 Unmodified _LLILILLIKK_ 0 0 0 ENST00000531550.1_1_11:118007744-118012097:-|nuORF;nc|ENSG00000177098|Q8IWT1-3|SCN4B;nc|ENSG00000177098|Q8IWT1-2|SCN4B;ENSG00000177098|ENST00000324727|SCN4B ENST00000531550.1_1_11:118007744-118012097:-|nuORF ENST00000531550.1_1_11:118007744-118012097:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2562255859375 2 590.443778 1178.873 NaN NaN NaN NaN NaN NaN NaN 44.871 1 42.105 41.605 42.605 -2.7661 0 0 0 2.8426 1 8136 8136 0 0 1 27272 6497 18144 18150 26879 26879 0.2907209837201208 LLILLRQWKRE 11 Unmodified _LLILLRQWKRE_ 0 0 0 nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF nc|ENSG00000095319|Q5SRE5-2|NUP188 nc|ENSG00000095319|Q5SRE5-2|NUP188 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 734.4629516601562 2 734.461553 1466.90855 NaN NaN NaN NaN NaN NaN NaN 42.424 1 39.773 39.273 40.273 -2.651 0 0 0 0.23698 1 7638 7638 0.35063 0 1 27273 1856 18145 18151 26880 26880 0.19377528881705075 LLINKIKSI 9 Unmodified _LLINKIKSI_ 0 0 0 REV__tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1 REV__tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.63275146484375 3 347.905865 1040.69577 -0.53745 -0.00018698 0.26007 9.048E-05 -0.27738 -9.6501E-05 347.90593536586306 111.77 0.49508 107.35 107.09 107.59 -4.4231 24 13 2 0 0 0 0.54459 1 21992 21992 4.7159 3.871 1 1991200 + 27274 25130 18146 18152 26881 26881 0.17704642821900052 LLINKIKSI 9 Unmodified _LLINKIKSI_ 0 0 0 REV__tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1 REV__tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 347.905865 1040.69577 -0.043797 -1.5237E-05 -0.43392 -0.00015096 -0.47772 -0.0001662 347.9057154555207 112.03 0.66013 107.5 107.14 107.8 -4.5259 0.032589 -0.00038039 NaN 4.7159 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1290100 + 27275 25130 18146 18152 0.17704642821900052 LLINKIKSI 9 Unmodified _LLINKIKSI_ 0 0 0 REV__tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1 REV__tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 347.905865 1040.69577 -0.086825 -3.0207E-05 -0.09384 -3.2648E-05 -0.18067 -6.2855E-05 347.90579790366314 111.78 0.77129 107.55 107.18 107.95 -4.2289 0.084146 -2.5444E-05 NaN 4.7159 34 21 2 NaN NaN NaN NaN 0 NaN NaN 0 959030 + 27276 25130 18146 18152 0.17704642821900052 LLIQRFSP 8 Unmodified _LLIQRFSP_ 0 0 0 REV__MAP3K12|p.S536Lfs*35|1|0.36|ENSG00000139625|chr12:53483098-53483099|-/G|frameshift_variant REV__MAP3K12|p.S536Lfs*35|1|0.36|ENSG00000139625|chr12:53483098-53483099|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 487.2947998046875 2 487.295102 972.575651 NaN NaN NaN NaN NaN NaN NaN 167.01 1 162.06 161.56 162.56 -4.948 0 0 0 0.1742 1 32804 32804 1.4551 0.77368 1 + 27277 16526 18147 18153 26882 26882 0.08826654548136048 LLIRESGPA 9 Unmodified _LLIRESGPA_ 0 0 0 REV__nc|ENSG00000100065|Q9BWT7-2|CARD10 REV__nc|ENSG00000100065|Q9BWT7-2|CARD10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7425842285156 2 478.282192 954.549831 -0.02628 -1.2569E-05 -0.73077 -0.00034952 -0.75705 -0.00036209 478.2820827885737 67.324 0.73529 64.216 63.685 64.421 -3.1086 37 20 3 0 0 0 0.58699 1 13065 13065 32.305 9.1571 1 1431100 + 27278 23967 18148 18154 26883 26883 0.07073760305854648 LLITEIPIL 9 Unmodified _LLITEIPIL_ 0 0 0 REV__ENST00000299314.11_1_12:102183791-102224401:-|nuORF REV__ENST00000299314.11_1_12:102183791-102224401:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.22674560546875 3 342.226604 1023.65798 NaN NaN NaN NaN NaN NaN NaN 75.1 1 75.1 74.6 75.6 0 0 0 0 0.23508 1 14582 14582 0.26902 0 1 + 27279 20390 18149 18155 26884 26884 0.14710131836443452 LLITEIPIL 9 Unmodified _LLITEIPIL_ 0 0 0 REV__ENST00000299314.11_1_12:102183791-102224401:-|nuORF REV__ENST00000299314.11_1_12:102183791-102224401:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.2274475097656 3 342.226604 1023.65798 NaN NaN NaN NaN NaN NaN NaN 86.224 1 86.224 85.724 86.724 0 0 0 0 0.23508 1 16829 16829 0.26902 0 1 + 27280 20390 18149 18155 26885 26885 0.14710131836443452 LLIVKRGGPL 10 Unmodified _LLIVKRGGPL_ 0 0 0 REV__nc|ENSG00000214216|Q1A5X6-3|IQCJ REV__nc|ENSG00000214216|Q1A5X6-3|IQCJ MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2722778320312 2 533.360776 1064.707 NaN NaN NaN NaN NaN NaN NaN 135.59 1 130.95 130.45 131.45 -4.6399 0 0 0 0.22588 1 26744 26744 7.9102 2.6795 1 + 27281 24266 18150 18156 26886 26886 0.17723464916048215 LLIVSVFKY 9 Unmodified _LLIVSVFKY_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|9|1|sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|9|1|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2643432617188 2 541.336436 1080.65832 0.34653 0.00018759 2.4699 0.001337 2.8164 0.0015246 541.3375132438905 110.57 0.2104 110.57 110.43 110.64 0 7 5 2 0 0 0 0.84208 1 21722 21722 11.64 3.047 1 1487000 + 27282 23625 18151 18157 26887 26887 0.12121551556288068 LLIWVPLGPS 10 Unmodified _LLIWVPLGPS_ 0 0 0 REV__ENST00000542541.6_1_19:19050705-19050816:-|nuORF REV__ENST00000542541.6_1_19:19050705-19050816:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7800903320312 2 547.83406 1093.65357 NaN NaN NaN NaN NaN NaN NaN 135.05 1 135.05 134.55 135.55 0 0 0 0 2.8426 1 26744 26744 0.84494 0.83168 1 + 27283 22875 18152 18158 26888 26888 0.11048667413501789 LLKAAFMSY 9 Unmodified _LLKAAFMSY_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2808227539062 2 522.283346 1042.55214 NaN NaN NaN NaN NaN NaN NaN 103.36 1 99.174 98.674 99.674 -4.1861 0 0 0 0.23508 1 20320 20320 12.532 1.4171 1 + 27284 17662 18153 18159 26889 26889 0.03256472719294834 LLKAATNKDI 10 Unmodified _LLKAATNKDI_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7749633789062 2 543.829506 1085.64446 0.80134 0.00043579 -0.84286 -0.00045837 -0.041516 -2.2578E-05 543.8289810400602 104.35 0.77991 100.29 99.877 100.66 -4.0543 50 21 3 0 0 0 0.51405 1 19997 19997 3.8763 0.80407 1 6225900 27285 3655 18154 18160 26890 26890 0.10506274057183873 LLKALKGY 8 Unmodified _LLKALKGY_ 0 0 0 ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1 ENST00000558123.5_1_15:41625112-41672381:+|nuORF ENST00000558123.5_1_15:41625112-41672381:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7681884765625 2 453.294571 904.574589 0.030079 1.3635E-05 0.19088 8.6526E-05 0.22096 0.00010016 453.29478691104435 25.416 0.17389 23.882 23.818 23.992 -1.5342 6 4 2 0 0 0 1.0268 1 4191 4191 0 0 1 297080 27286 4111 18155 18161 26891 26891 0.11848440179232966 LLKALRVH 8 Unmodified _LLKALRVH_ 0 0 0 ITSN1|p.R1302H|1|0.24|ENSG00000205726|chr21:33865165-33865165|G/A|missense_variant ITSN1|p.R1302H|1|0.24|ENSG00000205726|chr21:33865165-33865165|G/A|missense_variant ITSN1|p.R1302H|1|0.24|ENSG00000205726|chr21:33865165-33865165|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.2069091796875 3 317.215033 948.62327 NaN NaN NaN NaN NaN NaN NaN 63.891 1 63.891 63.391 64.391 0 0 0 0 0.21486 1 12294 12294 0.45834 0 1 27287 11967 18156 18162 26892 26892 0.1469035353898107 LLKALRVH 8 Unmodified _LLKALRVH_ 0 0 0 ITSN1|p.R1302H|1|0.24|ENSG00000205726|chr21:33865165-33865165|G/A|missense_variant ITSN1|p.R1302H|1|0.24|ENSG00000205726|chr21:33865165-33865165|G/A|missense_variant ITSN1|p.R1302H|1|0.24|ENSG00000205726|chr21:33865165-33865165|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.2218017578125 3 317.215033 948.62327 NaN NaN NaN NaN NaN NaN NaN 67.289 1 63.793 63.293 64.293 -3.4965 0 0 0 0.21486 1 12623 12623 0.45834 0 1 27288 11967 18156 18162 26893 26893 0.1469035353898107 LLKAQDKEH 9 Unmodified _LLKAQDKEH_ 0 0 0 REV__SYCP2L|p.L595*|1|0.45|ENSG00000153157|chr6:10935153-10935153|T/-|frameshift_variant REV__SYCP2L|p.L595*|1|0.45|ENSG00000153157|chr6:10935153-10935153|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2616577148438 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 19.9 1 18.504 18.004 19.004 -1.3966 0 0 0 0.16428 1 3301 3301 28.487 0 1 + 27289 17137 18157 18163 26894 26894 0.05568530363279933 LLKARLVPA 9 Unmodified _LLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27178955078125 2 490.834394 979.654236 0.028856 1.4164E-05 -0.079228 -3.8888E-05 -0.050371 -2.4724E-05 490.8342762374851 90.524 0.46243 90.524 90.295 90.758 0 18 12 2 0 0 0 0.54076 1 17667 17667 34.102 17.16 1 2189900 27290 4550 18158 18164 26895 26895 0.1635950685321177 LLKARLVPA 9 Unmodified _LLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27154541015625 2 490.834394 979.654236 0.11706 5.7457E-05 0.055171 2.708E-05 0.17223 8.4537E-05 490.83437699254785 93.869 0.58968 89.878 89.691 90.28 -3.9907 26 16 2 0 0 0 0.69192 1 18399 18399 26.884 9.9414 1 1638300 27291 4550 18158 18164 26896 26896 0.1635950685321177 LLKARLVPA 9 Unmodified _LLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2586364746094 2 490.834394 979.654236 0.27697 0.00013594 0.074031 3.6337E-05 0.351 0.00017228 490.8344003416427 94.095 0.45343 89.952 89.72 90.173 -4.1435 20 12 2 0 0 0 0.47592 1 17937 17937 17.113 4.8722 1 1466000 27292 4550 18158 18164 26897 26897 0.1635950685321177 LLKARLVPA 9 Unmodified _LLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2765197753906 2 490.834394 979.654236 -0.19123 -9.386E-05 0.44431 0.00021808 0.25309 0.00012422 490.83463380907847 93.908 0.47971 90.064 89.817 90.296 -3.844 21 13 2 0 0 0 0.69192 1 18009 18009 26.884 5.137 1 1333300 27293 4550 18158 18164 26898 26898 0.1635950685321177 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25079345703125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 22.261 1 22.261 21.761 22.761 0 0 0 0 0.22588 1 3760 3760 0.77653 0.63664 1 27294 9667 18159 18165 26899 26899 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2473449707031 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 46.41 1 46.41 45.91 46.91 0 0 0 0 2.8426 1 8742 8742 0 0 1 27295 9667 18159 18165 26900 26900 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2518310546875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 129.95 1 129.95 129.45 130.45 0 0 0 0 2.8426 1 25677 25677 0 0 1 27296 9667 18159 18165 26901 26901 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2491149902344 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 103.03 1 98.839 98.339 99.339 -4.1861 0 0 0 2.8426 1 20253 20253 0.043787 0 1 27297 9667 18159 18165 26902 26902 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2448425292969 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 112.51 1 108.05 107.55 108.55 -4.4539 0 0 0 0.22588 1 22173 22173 0.77653 0 1 27298 9667 18159 18165 26903 26903 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2353210449219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 118.45 1 113.95 113.45 114.45 -4.502 0 0 0 0.22588 1 23357 23357 0.77653 0 1 27299 9667 18159 18165 26904 26904 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2535095214844 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 154.25 1 149.48 148.98 149.98 -4.7684 0 0 0 0.22588 1 30659 30659 0.77653 0.61721 1 27300 9667 18159 18165 26905 26905 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25018310546875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 35.651 1 33.399 32.899 33.899 -2.2527 0 0 0 0.22588 1 6287 6287 0.77653 0.14971 1 27301 9667 18159 18165 26906 26906 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2533264160156 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 45.314 1 42.449 41.949 42.949 -2.8653 0 0 0 0.22588 1 8222 8222 0.77653 0.61721 1 27302 9667 18159 18165 26907 26907 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2530822753906 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 53.304 1 50.216 49.716 50.716 -3.0876 0 0 0 0.22588 1 9811 9811 2.086 0.63089 1 27303 9667 18159 18165 26908 26908 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25323486328125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 138.02 1 133.1 132.6 133.6 -4.9216 0 0 0 0.22588 1 26538 26538 2.086 0.75636 1 27304 9667 18159 18165 26909 26909 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25311279296875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 154.94 1 149.65 149.15 150.15 -5.2854 0 0 0 0.22588 1 30049 30049 0.77653 0.61721 1 27305 9667 18159 18165 26910 26910 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2374572753906 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 155.61 1 150.32 149.82 150.82 -5.2854 0 0 0 0.22588 1 30181 30181 0.77653 0.61721 1 27306 9667 18159 18165 26911 26911 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2454833984375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 22.938 1 21.149 20.649 21.649 -1.7886 0 0 0 2.8426 1 3666 3666 0.043787 0.043787 1 27307 9667 18159 18165 26912 26912 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2499694824219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 45.395 1 42.529 42.029 43.029 -2.8666 0 0 0 0.22588 1 8237 8237 0.77653 0.61721 1 27308 9667 18159 18165 26913 26913 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2405700683594 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 95.043 1 91.162 90.662 91.662 -3.881 0 0 0 2.8426 1 18236 18236 0.26539 0 1 27309 9667 18159 18165 26914 26914 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2384338378906 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 115.3 1 110.99 110.49 111.49 -4.3136 0 0 0 0.22588 1 22198 22198 0.77653 0.61721 1 27310 9667 18159 18165 26915 26915 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2481689453125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 122.39 1 117.86 117.36 118.36 -4.5305 0 0 0 0.22588 1 23563 23563 0.77653 0.078866 1 27311 9667 18159 18165 26916 26916 0.21390489652844735 LLKARRKLIY 10 Unmodified _LLKARRKLIY_ 0 0 0 ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2425842285156 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 148.64 1 143.58 143.08 144.08 -5.0595 0 0 0 0.22588 1 28792 28792 0.15932 0 1 27312 9667 18159 18165 26917 26917 0.21390489652844735 LLKCSFDVVK 10 Unmodified _LLKCSFDVVK_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1;COPG1|p.R176H|1|0.05|ENSG00000181789|chr3:129256102-129256102|G/A|missense_variant ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.31103515625 2 576.328285 1150.64202 NaN NaN NaN NaN NaN NaN NaN 90.307 1 86.529 86.029 87.029 -3.7779 0 0 0 0.22583 1 17281 17281 13.906 0 1 27313 6743 18160 18166 26918 26918 0.07272102327874563 LLKDLLKHV 9 Unmodified _LLKDLLKHV_ 0 0 0 REV__LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant REV__LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2076110839844 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 72.319 1 68.78 68.28 69.28 -3.5385 0 0 0 0.19622 1 13714 13714 1.2148 1.1416 1 + 27314 16523 18161 18167 26919 26919 0.15527758679127146 LLKDSERKY 9 Unmodified _LLKDSERKY_ 0 0 0 LAMB1|p.L1743S|1|0.2|ENSG00000091136|chr7:107924084-107924084|A/G|missense_variant LAMB1|p.L1743S|1|0.2|ENSG00000091136|chr7:107924084-107924084|A/G|missense_variant LAMB1|p.L1743S|1|0.2|ENSG00000091136|chr7:107924084-107924084|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.32373046875 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 83.554 1 83.554 83.054 84.054 0 0 0 0 0.23508 1 16292 16292 8.5933 0.68312 1 27315 12068 18162 18168 26920 26920 0.06533086051808823 LLKECSFGF 9 Unmodified _LLKECSFGF_ 0 0 0 REV__ZBTB1|p.K524Sfs*25|1|0.31|ENSG00000126804|chr14:64523069-64523069|A/-|frameshift_variant REV__ZBTB1|p.K524Sfs*25|1|0.31|ENSG00000126804|chr14:64523069-64523069|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26806640625 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 108.31 1 108.31 107.81 108.81 0 0 0 0 0.23508 1 21300 21300 9.3474 0 1 + 27316 15866 18163 18169 26921 26921 -0.0038040417739466648 LLKEVRLSE 9 Unmodified _LLKEVRLSE_ 0 0 0 nc|ENSG00000165271|Q9H6R4-3|NOL6;ENST00000464829.5_1_9:33469994-33473843:-|nuORF;NOL6|p.R296Afs*23|1|0.43|ENSG00000165271|chr9:33469098-33469098|G/-|frameshift_variant;NOL6|p.L641Wfs*8|1|0.21|ENSG00000165271|chr9:33466941-33466941|G/-|frameshift_variant;NOL6|p.G639Afs*10|2|0.15|ENSG00000165271|chr9:33466946-33466946|C/-|frameshift_variant;NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6 nc|ENSG00000165271|Q9H6R4-3|NOL6 nc|ENSG00000165271|Q9H6R4-3|NOL6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7794189453125 2 543.829506 1085.64446 0.029202 1.5881E-05 0.077924 4.2377E-05 0.10713 5.8258E-05 543.8294565962743 104.41 0.65157 100.19 99.857 100.51 -4.2183 47 18 4 0 0 0 0.25976 1 20502 20502 17.113 0 1 6887800 27317 12431 18164 18170 26922 26922 0.1050627405720661 LLKEYLEEI 9 Unmodified _LLKEYLEEI_ 0 0 0 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3245849609375 2 575.323722 1148.63289 0.29925 0.00017217 0.30598 0.00017604 0.60523 0.0003482 575.3237343967351 158.86 0.80276 158.86 158.5 159.3 0 52 22 3 0 0 0 0.1804 1 31865 31865 42.232 10.504 1 10402000 27318 25934 18165 18171 26923 26923 0.06452032243191752 LLKEYLEEI 9 Unmodified _LLKEYLEEI_ 0 0 0 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.325927734375 2 575.323722 1148.63289 0.18797 0.00010814 0.75404 0.00043382 0.94201 0.00054196 575.3236380818652 163.52 0.54771 158.73 158.34 158.88 -4.7898 27 15 3 0 0 0 0.45972 1 32594 32594 17.572 0 1 13643000 27319 25934 18165 18171 26924 26924 0.06452032243191752 LLKEYLEEI 9 Unmodified _LLKEYLEEI_ 0 0 0 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3221435546875 2 575.323722 1148.63289 0.28027 0.00016124 1.1604 0.00066763 1.4407 0.00082887 575.3247090743844 163.79 0.4231 158.75 158.51 158.94 -5.0446 21 11 3 0 0 0 0.037301 2 31887 31887;31891 54.068 31.448 1 8286900 27320 25934 18165 18171 26925;26926 26925 0.06452032243191752 LLKEYLEEI 9 Unmodified _LLKEYLEEI_ 0 0 0 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3268432617188 2 575.323722 1148.63289 0.48417 0.00027856 0.22122 0.00012728 0.7054 0.00040583 575.3234562959161 163.76 0.4738 158.69 158.46 158.93 -5.0648 20 13 3 0 0 0 0.061384 1 31883 31883 60.47 37.85 1 14574000 27321 25934 18165 18171 26927 26927 0.06452032243191752 LLKFFINSI 9 Unmodified _LLKFFINSI_ 0 0 0 REV__ENST00000366554.2_1_1:241757348-241757720:-|nuORF REV__ENST00000366554.2_1_1:241757348-241757720:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7929077148438 2 547.83406 1093.65357 NaN NaN NaN NaN NaN NaN NaN 131.44 1 131.44 130.94 131.94 0 0 0 0 0.23411 1 25986 25986 13.508 0 1 + 27322 20900 18166 18172 26928 26928 0.11048667413501789 LLKHLGVK 8 Unmodified _LLKHLGVK_ 0 0 0 nc|ENSG00000047634|Q9UN30-1|SCML1;nc|ENSG00000047634|Q9UN30-2|SCML1;ENSG00000047634|ENST00000380041|SCML1 nc|ENSG00000047634|Q9UN30-1|SCML1 nc|ENSG00000047634|Q9UN30-1|SCML1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 303.2062683105469 3 303.207767 906.601472 NaN NaN NaN NaN NaN NaN NaN 82.115 1 78.427 77.927 78.927 -3.6879 0 0 0 0.21486 1 15656 15656 1.6526 0 1 27323 1220 18167 18173 26929 26929 0.14443548790416116 LLKIIALGLSY 11 Unmodified _LLKIIALGLSY_ 0 0 0 ENSG00000175294|ENST00000312106|CATSPER1 ENSG00000175294|ENST00000312106|CATSPER1 ENSG00000175294|ENST00000312106|CATSPER1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2967529296875 2 602.389199 1202.76385 NaN NaN NaN NaN NaN NaN NaN 132.67 1 128.03 127.53 128.53 -4.6399 0 0 0 0.2367 1 26154 26154 2.9952 0.26005 1 27324 6398 18168 18174 26930 26930 0.17057467681888738 LLKIKGRKI 9 Unmodified _LLKIKGRKI_ 0 0 0 REV__tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1 REV__tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 534.9384765625 2 534.884419 1067.75428 0.21558 0.00011531 0.36744 0.00019654 0.58302 0.00031185 535.3872382452766 150.49 0.104 145.75 145.68 145.78 -4.7323 4 2 2 0 0 0 0.88237 1 29883 29883 2.3027 0 1 1748800 + 27325 24902 18169 18175 26931 26931 0.22311744187027216 LLKILAIVLR 10 Unmodified _LLKILAIVLR_ 0 0 0 ENST00000314393.5_1_8:123793760-123875761:+|nuORF ENST00000314393.5_1_8:123793760-123875761:+|nuORF ENST00000314393.5_1_8:123793760-123875761:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3330078125 2 576.415552 1150.81655 NaN NaN NaN NaN NaN NaN NaN 85.235 1 85.235 84.735 85.735 0 0 0 0 2.8426 1 16636 16636 0.0013812 0 1 27326 8670 18170 18176 26932 26932 0.24717470535324537 LLKILAIVLR 10 Unmodified _LLKILAIVLR_ 0 0 0 ENST00000314393.5_1_8:123793760-123875761:+|nuORF ENST00000314393.5_1_8:123793760-123875761:+|nuORF ENST00000314393.5_1_8:123793760-123875761:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3330078125 2 576.415552 1150.81655 NaN NaN NaN NaN NaN NaN NaN 85.265 1 85.265 84.765 85.765 0 0 0 0 0.22588 1 16640 16640 1.8442 0 1 27327 8670 18170 18176 26933 26933 0.24717470535324537 LLKILAIVLR 10 Unmodified _LLKILAIVLR_ 0 0 0 ENST00000314393.5_1_8:123793760-123875761:+|nuORF ENST00000314393.5_1_8:123793760-123875761:+|nuORF ENST00000314393.5_1_8:123793760-123875761:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3394165039062 2 576.415552 1150.81655 NaN NaN NaN NaN NaN NaN NaN 85.279 1 85.279 84.779 85.779 0 0 0 0 0.22588 1 16643 16643 1.8442 0 1 27328 8670 18170 18176 26934 26934 0.24717470535324537 LLKILRAARF 10 Unmodified _LLKILRAARF_ 0 0 0 REV__CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__ENSG00000141837|ENST00000360228|CACNA1A REV__nc|ENSG00000198216|Q15878-2|CACNA1E MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 400.8647766113281 3 400.936159 1199.78665 NaN NaN NaN NaN NaN NaN NaN 10.815 1 9.721 9.221 10.221 -1.0936 0 0 0 2.8426 1 1251 1251 0.13989 0.13851 1 + 27329 19398;13232;13234 18171 18177 26935 26935 0.19474531590003608 LLKKEHKRKKK 11 Unmodified _LLKKEHKRKKK_ 0 0 0 REV__ENSG00000164853|ENST00000316333|UNCX REV__ENSG00000164853|ENST00000316333|UNCX MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 718.6435546875 2 718.48282 1434.95109 NaN NaN NaN NaN NaN NaN NaN 168.03 1 163.08 162.58 163.58 -4.948 0 0 0 0.23698 1 33104 33104 0 0 1 + 27330 17717 18172 18178 26936 26936 0.2510092400993926 LLKKFIKL 8 Unmodified _LLKKFIKL_ 0 0 0 RAPGEF3|p.R736K|1|0.19|ENSG00000079337|chr12:47740666-47740666|C/T|missense_variant RAPGEF3|p.R736K|1|0.19|ENSG00000079337|chr12:47740666-47740666|C/T|missense_variant RAPGEF3|p.R736K|1|0.19|ENSG00000079337|chr12:47740666-47740666|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.90625 3 334.907318 1001.70012 NaN NaN NaN NaN NaN NaN NaN 9.333 1 8.5388 8.0388 9.0388 -0.79424 0 0 0 0.21486 1 1068 1068 0 0 1 27331 12862 18173 18179 26937 26937 0.1993415203544373 LLKKIIKKYL 10 Unmodified _LLKKIIKKYL_ 0 0 0 REV__ENSG00000163737|ENST00000296029|PF4 REV__ENSG00000163737|ENST00000296029|PF4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7615966796875 2 630.444309 1258.87407 NaN NaN NaN NaN NaN NaN NaN 84.624 1 84.624 84.124 85.124 0 0 0 0 0.22588 1 16508 16508 4.3292 2.8473 1 + 27332 17608 18174 18180 26938 26938 0.25498312740955953 LLKKIIKKYL 10 Unmodified _LLKKIIKKYL_ 0 0 0 REV__ENSG00000163737|ENST00000296029|PF4 REV__ENSG00000163737|ENST00000296029|PF4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7581176757812 2 630.444309 1258.87407 NaN NaN NaN NaN NaN NaN NaN 94.279 1 94.279 93.779 94.779 0 0 0 0 0.22588 1 18460 18460 0.45834 0.10771 1 + 27333 17608 18174 18180 26939 26939 0.25498312740955953 LLKKIPLGP 9 Unmodified _LLKKIPLGP_ 0 0 0 nc|ENSG00000214655|A7E2V4-2|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;ENST00000489234.1_1_10:75553796-75554126:+|nuORF;ENST00000431225.5_1_10:75551812-75554405:+|nuORF nc|ENSG00000214655|A7E2V4-2|ZSWIM8 nc|ENSG00000214655|A7E2V4-2|ZSWIM8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26300048828125 2 489.839146 977.663738 NaN NaN NaN NaN NaN NaN NaN 124.23 1 124.23 123.73 124.73 0 0 0 0 0.19624 1 24492 24492 0.073264 0 1 27334 12594 18175 18181 26940 26940 0.17401275138763594 LLKKKKHI 8 Unmodified _LLKKKKHI_ 0 0 0 ENSG00000151838|ENST00000537690|CCDC175 ENSG00000151838|ENST00000537690|CCDC175 ENSG00000151838|ENST00000537690|CCDC175 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 504.3692932128906 2 504.358037 1006.70152 NaN NaN NaN NaN NaN NaN NaN 147.2 1 147.2 146.7 147.7 0 0 0 0 0.21486 1 29444 29444 2.8892 0.31174 1 27335 4893 18176 18182 26941 26941 0.1984378612422688 LLKKKTKKQ 9 Unmodified _LLKKKTKKQ_ 0 0 0 ENSG00000111536|ENST00000229134|IL26;IL26|p.R65Q|1|0.25|ENSG00000111536|chr12:68225478-68225478|C/T|missense_variant ENSG00000111536|ENST00000229134|IL26 ENSG00000111536|ENST00000229134|IL26 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 557.8983764648438 2 557.887158 1113.75976 NaN NaN NaN NaN NaN NaN NaN 146.89 1 142.2 141.7 142.7 -4.6868 0 0 0 0.19634 1 29138 29138 0.0033805 0.0019993 1 27336 2626 18177 18183 26942 26942 0.20743422978853232 LLKKLVTTSIK 11 Unmodified _LLKKLVTTSIK_ 0 0 0 REV__tr|U7STB9|U7STB9_FUSNURibonucleaseH1N-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01003PE=4SV=1 REV__tr|U7STB9|U7STB9_FUSNURibonucleaseH1N-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01003PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7588500976562 2 622.421031 1242.82751 NaN NaN NaN NaN NaN NaN NaN 74.772 1 74.772 74.272 75.272 0 0 0 0 0.22632 1 14519 14519 0.094841 0 1 + 27337 25098 18178 18184 26943 26943 0.21580828118999307 LLKKRFFL 8 Unmodified _LLKKRFFL_ 0 0 0 REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2813110351562 2 532.852587 1063.69062 0.096939 5.1654E-05 3.1959 0.001703 3.2929 0.0017546 532.8534873824569 149.2 0.1687 149.2 149.06 149.23 0 6 4 2 0 0 0 0.89646 1 29867 29867 0.62683 0 1 596830 + 27338 14344 18179 18185 26944 26944 0.16132383749936707 LLKKRRSKKC 10 Unmodified _LLKKRRSKKC_ 0 0 0 USP1|p.E221Rfs*12|1|0.11|ENSG00000162607|chr1:62444833-62444834|-/A|frameshift_variant USP1|p.E221Rfs*12|1|0.11|ENSG00000162607|chr1:62444833-62444834|-/A|frameshift_variant USP1|p.E221Rfs*12|1|0.11|ENSG00000162607|chr1:62444833-62444834|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.763671875 2 630.408266 1258.80198 NaN NaN NaN NaN NaN NaN NaN 170.12 1 165.24 164.74 165.74 -4.873 0 0 0 2.8426 1 33647 33647 0.26539 0 1 27339 26559 18180 18186 26945 26945 0.182930751155709 LLKKTLYT 8 Unmodified _LLKKTLYT_ 0 0 0 ENST00000517514.1_1_8:1706422-1707628:+|nuORF ENST00000517514.1_1_8:1706422-1707628:+|nuORF ENST00000517514.1_1_8:1706422-1707628:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2582092285156 2 490.312961 978.611368 NaN NaN NaN NaN NaN NaN NaN 140.92 1 136.05 135.55 136.55 -4.8678 0 0 0 0.2396 1 27182 27182 0.12286 0 1 27340 10797 18181 18187 26946 26946 0.1212069200513497 LLKLEKDT 8 Unmodified _LLKLEKDT_ 0 0 0 ENSG00000137814|ENST00000260372|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2 ENSG00000137814|ENST00000260372|HAUS2 ENSG00000137814|ENST00000260372|HAUS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2536315917969 2 480.292225 958.569897 0.70962 0.00034082 -0.63538 -0.00030517 0.074239 3.5656E-05 480.291887158387 105.12 1.2646 101.03 100.27 101.53 -4.0913 52 35 2 0 0 0 0.66265 1 20295 20295 18.135 0 1 1034500 27341 4114 18182 18188 26947 26947 0.08895511245816579 LLKLILKKH 9 Unmodified _LLKLILKKH_ 0 0 0 ENST00000280557.10_1_12:123252139-123253391:+|nuORF ENST00000280557.10_1_12:123252139-123253391:+|nuORF ENST00000280557.10_1_12:123252139-123253391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 553.3671875 2 553.394619 1104.77469 NaN NaN NaN NaN NaN NaN NaN 166.15 1 161.36 160.86 161.86 -4.7898 0 0 0 0.19635 1 33344 33344 0 0 1 27342 8436 18183 18189 26948 26948 0.22648914846831758 LLKLKESPIY 10 Unmodified _LLKLKESPIY_ 0 0 0 REV__ENST00000508165.1_1_4:135249290-135249890:+|nuORF REV__ENST00000508165.1_1_4:135249290-135249890:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2866821289062 2 602.371007 1202.72746 NaN NaN NaN NaN NaN NaN NaN 151.25 1 146.5 146 147 -4.7523 0 0 0 0.22588 1 30048 30048 7.9102 0 1 + 27343 22507 18184 18190 26949 26949 0.13420590785199238 LLKLKKLLKF 10 Unmodified _LLKLKKLLKF_ 0 0 0 REV__tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1 REV__tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7527465820312 2 622.446852 1242.87915 NaN NaN NaN NaN NaN NaN NaN 76.356 1 72.941 72.441 73.441 -3.4151 0 0 0 0.22588 1 14901 14901 0.45834 0 1 + 27344 25022 18185 18191 26950 26950 0.26742616603542047 LLKLLLLLQPP 11 Unmodified _LLKLLLLLQPP_ 0 0 0 LHCGR|p.K258Nfs*16|2|0.31|ENSG00000138039|chr2:48698707-48698707|T/-|frameshift_variant;LHCGR|p.F588Lfs*14|2|0.18|ENSG00000138039|chr2:48688033-48688033|A/-|frameshift_variant;LHCGR|p.A589Cfs*17|2|0.24|ENSG00000138039|chr2:48688032-48688033|-/A|frameshift_variant;nc|ENSG00000138039|P22888-2|LHCGR;ENSG00000138039|ENST00000294954|LHCGR LHCGR|p.K258Nfs*16|2|0.31|ENSG00000138039|chr2:48698707-48698707|T/-|frameshift_variant LHCGR|p.K258Nfs*16|2|0.31|ENSG00000138039|chr2:48698707-48698707|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7770385742188 2 630.936317 1259.85808 NaN NaN NaN NaN NaN NaN NaN 97.748 1 93.65 93.15 94.15 -4.0978 0 0 0 0.23698 1 19185 19185 0.35063 0 1 27345 4141 18186 18192 26951 26951 0.23854606504050935 LLKLVRAIR 9 Unmodified _LLKLVRAIR_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-4|CACNA1I;REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000100346|Q9P0X4-4|CACNA1I MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2677001953125 2 541.382043 1080.74953 0.22662 0.00012269 -0.88399 -0.00047858 -0.65737 -0.00035589 541.881878960077 136.35 0.1765 131.71 131.57 131.74 -4.6399 6 4 2 0 0 0 0.63929 1 26910 26910 0.0033805 0 1 2538500 + 27346 14696;19258 18187 18193 26952 26952 0.21238860044240937 LLKLVVVIIAV 11 Unmodified _LLKLVVVIIAV_ 0 0 0 REV__nc|ENSG00000115750|Q53T94-2|TAF1B REV__nc|ENSG00000115750|Q53T94-2|TAF1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2598266601562 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 132.56 1 127.76 127.26 128.26 -4.799 0 0 0 0.22632 1 25516 25516 0.026206 0 1 + 27347 15446 18188 18194 26953 26953 0.2543522147529984 LLKMLKLHLIL 11 Unmodified _LLKMLKLHLIL_ 0 0 0 REV__ENST00000575041.5_1_16:11864830-11868126:-|nuORF REV__ENST00000575041.5_1_16:11864830-11868126:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.97344970703125 4 334.47936 1333.88834 -0.73921 -0.00024725 -0.71384 -0.00023876 -1.453 -0.00048601 334.47900069657084 66.42 0.52817 66.42 66.136 66.664 0 47 14 4 0 0 0 0.66242 1 12821 12821 0.172 0.172 1 8282300 + 27348 23196 18189 18195 26954 26954 0.2347464189758739 LLKMLKLHLIL 11 Unmodified _LLKMLKLHLIL_ 0 0 0 REV__ENST00000575041.5_1_16:11864830-11868126:-|nuORF REV__ENST00000575041.5_1_16:11864830-11868126:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 334.47936 1333.88834 -0.36648 -0.00012258 -0.94158 -0.00031494 -1.3081 -0.00043752 334.4788915393193 69.636 1.3409 66.456 66.082 67.423 -3.1796 0.030046 -7.7546E-05 NaN 0.172 87 37 4 NaN NaN NaN NaN 0 NaN NaN 0 12830000 + 27349 23196 18189 18195 0.2347464189758739 LLKMLKLHLIL 11 Unmodified _LLKMLKLHLIL_ 0 0 0 REV__ENST00000575041.5_1_16:11864830-11868126:-|nuORF REV__ENST00000575041.5_1_16:11864830-11868126:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 334.47936 1333.88834 -0.3441 -0.00011509 -1.0153 -0.00033959 -1.3594 -0.00045469 334.72974608278264 69.793 0.69633 66.402 66.088 66.784 -3.3903 -0.023839 -0.00017616 NaN 0.172 56 19 4 NaN NaN NaN NaN 0 NaN NaN 0 6353200 + 27350 23196 18189 18195 0.2347464189758739 LLKNKKTSSLL 11 Unmodified _LLKNKKTSSLL_ 0 0 0 KMT2C|p.S3786T|1|0.17|ENSG00000055609|chr7:152162221-152162221|A/T|missense_variant KMT2C|p.S3786T|1|0.17|ENSG00000055609|chr7:152162221-152162221|A/T|missense_variant KMT2C|p.S3786T|1|0.17|ENSG00000055609|chr7:152162221-152162221|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7681884765625 2 622.900463 1243.78637 NaN NaN NaN NaN NaN NaN NaN 125.47 1 120.82 120.32 121.32 -4.6495 0 0 0 0.23324 1 24141 24141 5.7319 0.97584 1 27351 12010 18190 18196 26955 26955 0.1742306707951684 LLKQIKFVV 9 Unmodified _LLKQIKFVV_ 0 0 0 STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7747802734375 2 544.365527 1086.7165 0.1984 0.000108 2.0211 0.0011002 2.2195 0.0012082 544.3676362773602 130.95 0.18065 126.32 126.24 126.42 -4.6359 5 4 2 0 0 0 0.87788 1 25807 25807 5.2307 2.3415 1 711230 27352 3011 18191 18197 26956 26956 0.1766123320155657 LLKQTLPLS 9 Unmodified _LLKQTLPLS_ 0 0 0 nc|ENSG00000160838|Q8N4P6-2|LRRC71 nc|ENSG00000160838|Q8N4P6-2|LRRC71 nc|ENSG00000160838|Q8N4P6-2|LRRC71 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 506.32403564453125 2 506.823692 1011.63283 0.081194 4.1151E-05 -0.1683 -8.5298E-05 -0.087106 -4.4147E-05 506.82353404899914 124.67 0.90399 120.07 119.57 120.47 -4.5984 71 25 4 0 0 0 0.45788 1 24496 24496 1.6919 1.2836 1 28078000 27353 12407 18192 18198 26957 26957 0.12748077033870686 LLKQTLPLS 9 Unmodified _LLKQTLPLS_ 0 0 0 nc|ENSG00000160838|Q8N4P6-2|LRRC71 nc|ENSG00000160838|Q8N4P6-2|LRRC71 nc|ENSG00000160838|Q8N4P6-2|LRRC71 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 506.823692 1011.63283 0.021013 1.065E-05 -0.24271 -0.00012301 -0.2217 -0.00011236 506.82352270612284 124.91 0.91331 120.14 119.74 120.65 -4.7681 0.018076 -2.5094E-05 NaN 1.6919 82 25 4 NaN NaN NaN NaN 0 NaN NaN 0 29480000 27354 12407 18192 18198 0.12748077033870686 LLKQTLPLS 9 Unmodified _LLKQTLPLS_ 0 0 0 nc|ENSG00000160838|Q8N4P6-2|LRRC71 nc|ENSG00000160838|Q8N4P6-2|LRRC71 nc|ENSG00000160838|Q8N4P6-2|LRRC71 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 506.823692 1011.63283 0.14883 7.5432E-05 -0.24955 -0.00012648 -0.10072 -5.1048E-05 506.82346100610806 124.81 1.0273 120.16 119.75 120.78 -4.6495 0.038212 -3.2027E-05 NaN 1.6919 83 28 4 NaN NaN NaN NaN 0 NaN NaN 0 22532000 27355 12407 18192 18198 0.12748077033870686 LLKRIAKKKY 10 Unmodified _LLKRIAKKKY_ 0 0 0 ENST00000556216.5_1_14:54997441-54997718:+|nuORF;ENST00000216420.11_1_14:54996904-54997718:+|nuORF ENST00000556216.5_1_14:54997441-54997718:+|nuORF ENST00000556216.5_1_14:54997441-54997718:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7794799804688 2 630.929357 1259.84416 NaN NaN NaN NaN NaN NaN NaN 97.012 1 92.915 92.415 93.415 -4.0978 0 0 0 0.22588 1 19031 19031 1.8442 1.3859 1 27356 8112 18193 18199 26958 26958 0.22463373795608277 LLKRKQRIL 9 Unmodified _LLKRKQRIL_ 0 0 0 REV__ADGB|p.K486Rfs*5|1|0.4|ENSG00000118492|chr6:146691255-146691255|A/-|frameshift_variant REV__ADGB|p.K486Rfs*5|1|0.4|ENSG00000118492|chr6:146691255-146691255|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 584.6102905273438 2 584.40605 1166.79755 NaN NaN NaN NaN NaN NaN NaN 166.36 1 161.41 160.91 161.91 -4.9484 0 0 0 0.19634 1 32592 32592 0.0033805 0 1 + 27357 12960 18194 18200 26959 26959 0.22081933964318523 LLKRQEWP 8 Unmodified _LLKRQEWP_ 0 0 0 REV__ENSG00000135912|ENST00000392102|TTLL4 REV__ENSG00000135912|ENST00000392102|TTLL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5634460449219 3 357.209948 1068.60801 NaN NaN NaN NaN NaN NaN NaN 71.575 1 71.575 71.075 72.075 0 0 0 0 0.21486 1 13868 13868 1.6526 0.58116 1 + 27358 16298 18195 18201 26960 26960 0.07645441951149223 LLKRRLREILQ 11 Unmodified _LLKRRLREILQ_ 0 0 0 ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 719.4999389648438 2 719.472452 1436.93035 NaN NaN NaN NaN NaN NaN NaN 169.82 1 169.82 169.32 170.32 0 0 0 0 0.22632 1 34873 34873 0.50596 0.50596 1 27359 7875 18196 18202 26961 26961 0.2293633363030949 LLKSLSELY 9 Unmodified _LLKSLSELY_ 0 0 0 ENSG00000154237|ENST00000388948|LRRK1 ENSG00000154237|ENST00000388948|LRRK1 ENSG00000154237|ENST00000388948|LRRK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2659301757812 2 533.313158 1064.61176 NaN NaN NaN NaN NaN NaN NaN 120.17 1 120.17 119.67 120.67 0 0 0 0 0.23508 1 23686 23686 12.532 2.3482 1 27360 5001 18197 18203 26962 26962 0.08204066934331422 LLKSMCWY 8 Unmodified _LLKSMCWY_ 0 0 0 REV__nc|ENSG00000054611|Q8WUA7-4|TBC1D22A REV__nc|ENSG00000054611|Q8WUA7-4|TBC1D22A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.256591796875 2 522.256274 1042.49799 NaN NaN NaN NaN NaN NaN NaN 148.36 1 143.3 142.8 143.8 -5.0595 0 0 0 0.21486 1 28733 28733 9.3474 1.4373 1 + 27361 14105 18198 18204 26963 26963 -0.021554427039291113 LLKSNLSSV 9 Unmodified _LLKSNLSSV_ 0 0 0 REV__nc|ENSG00000118557|Q8TBY8-3|PMFBP1 REV__nc|ENSG00000118557|Q8TBY8-3|PMFBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2533874511719 2 480.78985 959.565146 NaN NaN NaN NaN NaN NaN NaN 80.883 1 80.883 80.383 81.383 0 0 0 0 0.10094 1 15748 15748 38.176 9.6887 1 + 27362 15557 18199 18205 26964 26964 0.08374627103057719 LLKTKKKGQ 9 Unmodified _LLKTKKKGQ_ 0 0 0 ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34 ENST00000495224.1_1_1:235295030-235299397:-|nuORF ENST00000495224.1_1_1:235295030-235299397:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2573852539062 2 522.350409 1042.68626 NaN NaN NaN NaN NaN NaN NaN 159.41 1 154.14 153.64 154.64 -5.2712 0 0 0 0.23508 1 30931 30931 2.3027 0 1 27363 7192 18200 18206 26965 26965 0.16662874536359595 LLKTKLCPY 9 Unmodified _LLKTKLCPY_ 0 0 0 ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.216064453125 3 360.215822 1077.62564 NaN NaN NaN NaN NaN NaN NaN 122.3 1 122.3 121.8 122.8 0 0 0 0 0.23508 1 24109 24109 2.7352 1.8708 1 27364 5190 18201 18207 26966 26966 0.08993021161768411 LLKTKRKHK 9 Unmodified _LLKTKRKHK_ 0 0 0 LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7 LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.323486328125 2 576.3904 1150.76625 NaN NaN NaN NaN NaN NaN NaN 103.17 1 98.834 98.334 99.334 -4.3399 0 0 0 0.23508 1 19758 19758 2.3027 0 1 27365 6364 18202 18208 26967 26967 0.1968936093019238 LLKTLIRKIY 10 Unmodified _LLKTLIRKIY_ 0 0 0 REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7711791992188 2 630.923741 1259.83293 0.43347 0.00027349 -0.49712 -0.00031364 -0.063647 -4.0156E-05 631.4240415932776 126.18 0.17914 121.53 121.44 121.62 -4.6495 6 4 2 0 0 0 1.133 1 24285 24285 0.26539 0.2216 1 973820 + 27366 22877 18203 18209 26968 26968 0.21340551701473487 LLKTMMWDN 9 Unmodified _LLKTMMWDN_ 0 0 0 MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant;ENSG00000171495|ENST00000399564|MROH2B;nc|ENSG00000171495|Q7Z745-2|MROH2B MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3197021484375 2 576.28302 1150.55149 0.61132 0.00035229 1.0951 0.00063111 1.7065 0.0009834 576.7853562230466 81.377 0.20786 81.377 81.268 81.475 0 6 5 2 0 0 0 0.49624 1 15845 15845 0.073264 0 1 4045000 27367 6151 18204 18210 26969 26969 -0.017766899920388823 LLKTMMWDN 9 Unmodified _LLKTMMWDN_ 0 0 0 MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant;ENSG00000171495|ENST00000399564|MROH2B;nc|ENSG00000171495|Q7Z745-2|MROH2B MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.28302 1150.55149 0.29742 0.0001714 -0.054445 -3.1376E-05 0.24297 0.00014002 576.2830865158676 84.922 0.90327 81.013 80.63 81.533 -3.9093 -0.18195 -0.00046133 NaN 0.073264 32 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1371100 27368 6151 18204 18210 -0.017766899920388823 LLKVIPKLEV 10 Unmodified _LLKVIPKLEV_ 0 0 0 tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1 tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1 tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3125 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 131.26 1 126.48 125.98 126.98 -4.7725 0 0 0 0.22588 1 25268 25268 1.4819 0 1 27369 25988 18205 18211 26970 26970 0.19957771544500247 LLLALLLPGGD 11 Unmodified _LLLALLLPGGD_ 0 0 0 ENSG00000158481|ENST00000368170|CD1C ENSG00000158481|ENST00000368170|CD1C ENSG00000158481|ENST00000368170|CD1C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.792724609375 2 547.844625 1093.6747 NaN NaN NaN NaN NaN NaN NaN 10.183 1 9.1169 8.6169 9.6169 -1.0664 0 0 0 0.23698 1 1087 1087 0.35063 0.35063 1 27370 5168 18206 18212 26971 26971 0.13160632722383525 LLLEQRRLWRW 11 Unmodified _LLLEQRRLWRW_ 0 0 0 ENST00000494373.1_1_2:54014190-54014463:+|nuORF ENST00000494373.1_1_2:54014190-54014463:+|nuORF ENST00000494373.1_1_2:54014190-54014463:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6959838867188 3 523.643927 1567.90995 NaN NaN NaN NaN NaN NaN NaN 151.42 1 146.66 146.16 147.16 -4.7523 0 0 0 0.22632 1 30080 30080 2.1236 1.9516 1 27371 10557 18207 18213 26972 26972 0.14871162970484875 LLLETGVPV 9 Unmodified _LLLETGVPV_ 0 0 0 REV__CPD|p.A997V|1|0.18|ENSG00000108582|chr17:30449669-30449669|C/T|missense_variant REV__CPD|p.A997V|1|0.18|ENSG00000108582|chr17:30449669-30449669|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1456604003906 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 85.207 1 81.297 80.797 81.797 -3.9093 0 0 0 0.23508 1 16203 16203 1.1933 0 1 + 27372 13566 18208 18214 26973 26973 0.09188412734158646 LLLETGVPV 9 Unmodified _LLLETGVPV_ 0 0 0 REV__CPD|p.A997V|1|0.18|ENSG00000108582|chr17:30449669-30449669|C/T|missense_variant REV__CPD|p.A997V|1|0.18|ENSG00000108582|chr17:30449669-30449669|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.19659423828125 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 90.317 1 86.272 85.772 86.772 -4.0443 0 0 0 0.23508 1 17204 17204 1.1933 0 1 + 27373 13566 18208 18214 26974 26974 0.09188412734158646 LLLEYTDSSY 10 Unmodified _LLLEYTDSSY_ 0 0 0 ENST00000479578.5_1_1:110198981-110200495:+|nuORF;GSTM4|p.E29K|1|0.32|ENSG00000168765|chr1:109656760-109656760|G/A|missense_variant;nc|ENSG00000168765|Q03013-3|GSTM4;ENSG00000134201|ENST00000256593|GSTM5;ENSG00000168765|ENST00000369836|GSTM4;ENSG00000213366|ENST00000241337|GSTM2;nc|ENSG00000168765|Q03013-2|GSTM4;nc|ENSG00000213366|P28161-2|GSTM2;nc|ENSG00000134184|P09488-2|GSTM1;ENST00000476040.6_1_1:110210707-110212286:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;ENST00000414179.6_1_1:110210737-110211550:+|nuORF;ENST00000464206.5_1_1:110210707-110211992:+|nuORF;ENST00000481656.2_1_1:110210707-110211256:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000568786.1_1_1:110210737-110211998:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENSG00000134184|ENST00000309851|GSTM1 ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2909545898438 2 602.292619 1202.57069 NaN NaN NaN NaN NaN NaN NaN 111.32 1 111.32 110.82 111.82 0 0 0 0 2.8426 1 21899 21899 0.84494 0 1 27374 10342 18209 18215 26975 26975 -0.022497388958072406 LLLEYTDSSY 10 Unmodified _LLLEYTDSSY_ 0 0 0 ENST00000479578.5_1_1:110198981-110200495:+|nuORF;GSTM4|p.E29K|1|0.32|ENSG00000168765|chr1:109656760-109656760|G/A|missense_variant;nc|ENSG00000168765|Q03013-3|GSTM4;ENSG00000134201|ENST00000256593|GSTM5;ENSG00000168765|ENST00000369836|GSTM4;ENSG00000213366|ENST00000241337|GSTM2;nc|ENSG00000168765|Q03013-2|GSTM4;nc|ENSG00000213366|P28161-2|GSTM2;nc|ENSG00000134184|P09488-2|GSTM1;ENST00000476040.6_1_1:110210707-110212286:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;ENST00000414179.6_1_1:110210737-110211550:+|nuORF;ENST00000464206.5_1_1:110210707-110211992:+|nuORF;ENST00000481656.2_1_1:110210707-110211256:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000568786.1_1_1:110210737-110211998:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENSG00000134184|ENST00000309851|GSTM1 ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.29443359375 2 602.292619 1202.57069 NaN NaN NaN NaN NaN NaN NaN 145.8 1 145.8 145.3 146.3 0 0 0 0 0.22588 1 29146 29146 7.2892 0.56607 1 27375 10342 18209 18215 26976 26976 -0.022497388958072406 LLLFSAPSPH 10 Unmodified _LLLFSAPSPH_ 0 0 0 ENST00000494465.5_1_2:242611409-242611676:+|nuORF ENST00000494465.5_1_2:242611409-242611676:+|nuORF ENST00000494465.5_1_2:242611409-242611676:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2644653320312 2 541.305667 1080.59678 0.11813 6.3946E-05 -0.21156 -0.00011452 -0.093426 -5.0572E-05 541.305683434231 136.36 1.2238 131.47 131 132.22 -4.8951 73 34 4 0 0 0 0.48196 1 26114 26114 0.84494 0.21812 1 7184900 27376 10558 18210 18216 26977 26977 0.059706198569983826 LLLHRSTLL 9 Unmodified _LLLHRSTLL_ 0 0 0 ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.275390625 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 110.47 1 110.47 109.97 110.97 0 0 0 0 0.19622 1 21727 21727 0.96228 0 1 27377 3057 18211 18217 26978 26978 0.14086588019335977 LLLHSPLL 8 Unmodified _LLLHSPLL_ 0 0 0 ENST00000373709.7_1_1:31898701-31899576:+|nuORF ENST00000373709.7_1_1:31898701-31899576:+|nuORF ENST00000373709.7_1_1:31898701-31899576:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7690124511719 2 453.294571 904.574589 -0.082994 -3.7621E-05 0.4543 0.00020593 0.37131 0.00016831 453.29477251332673 25.969 0.34606 24.047 23.882 24.229 -1.9222 17 9 2 0 0 0 0.83982 1 4287 4287 2.5775 0 1 915300 27378 9204 18212 18218 26979 26979 0.11848440179244335 LLLIIISITFK 11 Unmodified _LLLIIISITFK_ 0 0 0 REV__tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1 REV__tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25079345703125 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 22.241 1 22.241 21.741 22.741 0 0 0 0 0.22632 1 3756 3756 0.094841 0 1 + 27379 25388 18213 18219 26980 26980 0.21658900267107128 LLLIIISITFK 11 Unmodified _LLLIIISITFK_ 0 0 0 REV__tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1 REV__tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.23675537109375 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 135.48 1 130.84 130.34 131.34 -4.6399 0 0 0 0.23698 1 26721 26721 1.3296 0.55311 1 + 27380 25388 18213 18219 26981 26981 0.21658900267107128 LLLIKYNIFIL 11 Unmodified _LLLIKYNIFIL_ 0 0 0 AP4E1|p.D175Efs*58|1|0.08|ENSG00000081014|chr15:50925202-50925202|T/-|frameshift_variant AP4E1|p.D175Efs*58|1|0.08|ENSG00000081014|chr15:50925202-50925202|T/-|frameshift_variant AP4E1|p.D175Efs*58|1|0.08|ENSG00000081014|chr15:50925202-50925202|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 454.9635009765625 3 454.963492 1361.86865 NaN NaN NaN NaN NaN NaN NaN 145.7 1 140.59 140.09 141.09 -5.1108 0 0 0 0.22632 1 28165 28165 0.026206 0 1 27381 176 18214 18220 26982 26982 0.2021858915845769 LLLILLKKK 9 Unmodified _LLLILLKKK_ 0 0 0 REV__tr|U7STW9|U7STW9_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01595PE=4SV=1 REV__tr|U7STW9|U7STW9_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01595PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.2890319824219 3 361.273889 1080.79984 NaN NaN NaN NaN NaN NaN NaN 176.78 1 176.78 176.28 177.28 0 0 0 0 0.23508 1 36623 36623 0 0 1 + 27382 25125 18215 18221 26983 26983 0.2626696964939583 LLLKALAVIQP 11 Unmodified _LLLKALAVIQP_ 0 0 0 REV__MTMR3|p.S466Ifs*6|1|0.03|ENSG00000100330|chr22:30013433-30013434|-/ATTTG|frameshift_variant REV__MTMR3|p.S466Ifs*6|1|0.03|ENSG00000100330|chr22:30013433-30013434|-/ATTTG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2561645507812 2 589.897192 1177.77983 0.61713 0.00036404 1.6645 0.00098187 2.2816 0.0013459 589.8998552814849 159.83 0.17575 155.03 154.91 155.08 -4.7952 5 4 2 0 0 0 0.95337 1 31764 31764 2.9952 0 1 1808600 + 27383 14692 18216 18222 26984 26984 0.1980517391880312 LLLKENSL 8 Unmodified _LLLKENSL_ 0 0 0 REV__tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1 REV__tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2500915527344 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 104.88 1 100.82 100.32 101.32 -4.0543 0 0 0 0.23312 1 20173 20173 6.2058 0 1 + 27384 25046 18217 18223 26985 26985 0.09219528591370363 LLLKITRWRKR 11 Unmodified _LLLKITRWRKR_ 0 0 0 REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1 REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.39990234375 2 741.990812 1481.96707 NaN NaN NaN NaN NaN NaN NaN 82.771 1 79.163 78.663 79.663 -3.6079 0 0 0 0.23698 1 16176 16176 0.35063 0 1 + 27385 16785 18218 18224 26986 26986 0.24536630246825553 LLLKKIQKAP 10 Unmodified _LLLKKIQKAP_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-7|XIRP2 REV__nc|ENSG00000163092|A4UGR9-7|XIRP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3180541992188 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 90.445 1 86.401 85.901 86.901 -4.0443 0 0 0 2.8426 1 17230 17230 0.043787 0 1 + 27386 24129 18219 18225 26987 26987 0.21080593638657774 LLLKTLEMY 9 Unmodified _LLLKTLEMY_ 0 0 0 REV__ENSG00000131153|ENST00000253462|GINS2 REV__ENSG00000131153|ENST00000253462|GINS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.22021484375 3 375.219233 1122.63587 NaN NaN NaN NaN NaN NaN NaN 76.108 1 72.692 72.192 73.192 -3.4151 0 0 0 0.23508 1 14854 14854 2.9952 0 1 + 27387 16058 18220 18226 26988 26988 0.07945584096364655 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.9579162597656 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 10.232 1 10.232 9.7316 10.732 0 0 0 0 0.21486 1 1265 1265 0 0 1 27388 3273 18221 18227 26989 26989 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.99188232421875 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 10.399 1 10.399 9.8992 10.899 0 0 0 0 0.21486 1 1297 1297 0 0 1 27389 3273 18221 18227 26990 26990 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.940185546875 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 11.576 1 11.576 11.076 12.076 0 0 0 0 0.21486 1 1545 1545 0.45834 0 1 27390 3273 18221 18227 26991 26991 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.9153747558594 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 12.873 1 12.873 12.373 13.373 0 0 0 0 0.21486 1 1822 1822 0 0 1 27391 3273 18221 18227 26992 26992 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.94744873046875 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 13.259 1 13.259 12.759 13.759 0 0 0 0 0.21486 1 1902 1902 0 0 1 27392 3273 18221 18227 26993 26993 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.9665832519531 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 13.574 1 13.574 13.074 14.074 0 0 0 0 0.21486 1 1968 1968 0 0 1 27393 3273 18221 18227 26994 26994 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.9041748046875 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 13.62 1 13.62 13.12 14.12 0 0 0 0 0.21486 1 1978 1978 0 0 1 27394 3273 18221 18227 26995 26995 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.9401550292969 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 16.822 1 16.822 16.322 17.322 0 0 0 0 0.21486 1 2633 2633 0 0 1 27395 3273 18221 18227 26996 26996 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.9044189453125 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 18.021 1 18.021 17.521 18.521 0 0 0 0 0.21486 1 2879 2879 0 0 1 27396 3273 18221 18227 26997 26997 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.8920593261719 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 23.837 1 23.837 23.337 24.337 0 0 0 0 0.2396 1 4083 4083 0 0 1 27397 3273 18221 18227 26998 26998 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.8916931152344 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 29.89 1 29.89 29.39 30.39 0 0 0 0 0.2396 1 5358 5358 0 0 1 27398 3273 18221 18227 26999 26999 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.9291076660156 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 10.217 1 9.3824 8.8824 9.8824 -0.8343 0 0 0 0.21486 1 1258 1258 0 0 1 27399 3273 18221 18227 27000 27000 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.93975830078125 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 14.316 1 13.202 12.702 13.702 -1.1142 0 0 0 0.21486 1 2139 2139 0 0 1 27400 3273 18221 18227 27001 27001 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.9394226074219 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 14.813 1 13.699 13.199 14.199 -1.1142 0 0 0 0.21486 1 2246 2246 0 0 1 27401 3273 18221 18227 27002 27002 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.91485595703125 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 15.324 1 14.21 13.71 14.71 -1.1142 0 0 0 0.21486 1 2355 2355 0 0 1 27402 3273 18221 18227 27003 27003 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.8999328613281 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 32.168 1 29.938 29.438 30.438 -2.2305 0 0 0 0.2396 1 5856 5856 0 0 1 27403 3273 18221 18227 27004 27004 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.65655517578125 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 69.12 1 65.941 65.441 66.441 -3.1796 0 0 0 0.2396 1 13436 13436 0 0 1 27404 3273 18221 18227 27005 27005 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.9002685546875 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 72.159 1 68.848 68.348 69.348 -3.3107 0 0 0 0.2396 1 14063 14063 0 0 1 27405 3273 18221 18227 27006 27006 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.9059143066406 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 9.8874 1 8.7938 8.2938 9.2938 -1.0936 0 0 0 0.21486 1 1084 1084 0 0 1 27406 3273 18221 18227 27007 27007 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.92755126953125 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 10.441 1 9.3478 8.8478 9.8478 -1.0936 0 0 0 0.21486 1 1188 1188 0 0 1 27407 3273 18221 18227 27008 27008 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.9183349609375 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 10.759 1 9.6659 9.1659 10.166 -1.0936 0 0 0 0.21486 1 1242 1242 0 0 1 27408 3273 18221 18227 27009 27009 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.91448974609375 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 10.83 1 9.7367 9.2367 10.237 -1.0936 0 0 0 0.21486 1 1254 1254 0 0 1 27409 3273 18221 18227 27010 27010 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.9402160644531 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 11.177 1 10.083 9.5832 10.583 -1.0936 0 0 0 0.21486 1 1312 1312 0 0 1 27410 3273 18221 18227 27011 27011 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.9134216308594 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 11.378 1 10.284 9.7843 10.784 -1.0936 0 0 0 0.21486 1 1345 1345 0 0 1 27411 3273 18221 18227 27012 27012 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.9405517578125 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 11.809 1 10.679 10.179 11.179 -1.1293 0 0 0 0.21486 1 1420 1420 0 0 1 27412 3273 18221 18227 27013 27013 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.9190979003906 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 12.004 1 10.875 10.375 11.375 -1.1293 0 0 0 0.21486 1 1453 1453 0 0 1 27413 3273 18221 18227 27014 27014 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.9399719238281 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 19.545 1 18.22 17.72 18.72 -1.3251 0 0 0 0.21486 1 2985 2985 0 0 1 27414 3273 18221 18227 27015 27015 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.928955078125 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 11.897 1 10.777 10.277 11.277 -1.1206 0 0 0 0.21486 1 1384 1384 0 0 1 27415 3273 18221 18227 27016 27016 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.9327087402344 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 12.623 1 11.502 11.002 12.002 -1.1206 0 0 0 0.21486 1 1518 1518 0 0 1 27416 3273 18221 18227 27017 27017 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.9400329589844 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 13.318 1 12.197 11.697 12.697 -1.1206 0 0 0 0.21486 1 1672 1672 0 0 1 27417 3273 18221 18227 27018 27018 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.5661926269531 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 53.275 1 50.18 49.68 50.68 -3.0954 0 0 0 0.2396 1 9845 9845 0 0 1 27418 3273 18221 18227 27019 27019 0.2134334728691556 LLLKVILL 8 Unmodified _LLLKVILL_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.89996337890625 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 55.633 1 52.495 51.995 52.995 -3.1377 0 0 0 0.2396 1 10334 10334 0 0 1 27419 3273 18221 18227 27020 27020 0.2134334728691556 LLLKYRRFYIK 11 Unmodified _LLLKYRRFYIK_ 0 0 0 REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 504.89801025390625 3 504.98529 1511.93404 NaN NaN NaN NaN NaN NaN NaN 144.6 1 139.53 139.03 140.03 -5.0671 0 0 0 0.22632 1 27903 27903 0 0 1 + 27420 21542 18222 18228 27021 27021 0.1985500340415456 LLLLALVPLNT 11 Unmodified _LLLLALVPLNT_ 0 0 0 REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2621459960938 2 590.389199 1178.76385 NaN NaN NaN NaN NaN NaN NaN 175.72 1 175.72 175.22 176.22 0 0 0 0 0.22632 1 36402 36402 0.50596 0 1 + 27421 12880 18223 18229 27022 27022 0.18161467681898102 LLLLFALC 8 Unmodified _LLLLFALC_ 0 0 0 ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3 ENST00000505322.5_1_1:2100378-2116445:+|nuORF ENST00000505322.5_1_1:2100378-2116445:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76507568359375 2 453.280075 904.545597 NaN NaN NaN NaN NaN NaN NaN 15.387 1 14.165 13.665 14.665 -1.2219 0 0 0 0.21486 1 2150 2150 0.79363 0 1 27422 10671 18224 18230 27023 27023 0.08950579558563732 LLLLFWLL 8 Unmodified _LLLLFWLL_ 0 0 0 REV__ENSG00000166884|ENST00000300127|OR4D6 REV__ENSG00000166884|ENST00000300127|OR4D6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.53094482421875 3 344.228168 1029.66268 NaN NaN NaN NaN NaN NaN NaN 66.776 1 63.449 62.949 63.949 -3.3268 0 0 0 0.23837 1 12579 12579 0.12286 0 1 + 27423 17883 18225 18231 27024 27024 0.14903060769847798 LLLLGRVLRLP 11 Unmodified _LLLLGRVLRLP_ 0 0 0 REV__ENST00000324557.8_1_3:183967532-183975309:+|nuORF REV__ENST00000324557.8_1_3:183967532-183975309:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 631.956787109375 2 631.937183 1261.85981 NaN NaN NaN NaN NaN NaN NaN 165.35 1 160.41 159.91 160.91 -4.9484 0 0 0 0.22632 1 32304 32304 0.172 0.14579 1 + 27424 20570 18226 18232 27025 27025 0.23935660312645268 LLLLHTRYN 9 Unmodified _LLLLHTRYN_ 0 0 0 UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.K1847Ffs*66|1|0.07|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.K1845T|1|0.27|ENSG00000152818|chr6:144516941-144516941|A/C|missense_variant UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2099609375 3 381.560869 1141.66078 -0.66819 -0.00025496 0.71973 0.00027462 0.051535 1.9664E-05 381.5611303091789 109.44 0.59607 105.06 104.75 105.34 -4.3776 22 16 2 0 0 0 0.65034 1 21582 21582 0 0 1 1308800 27425 4942 18227 18233 27026 27026 0.09561400013944876 LLLLIIALM 9 Unmodified _LLLLIIALM_ 0 0 0 nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;DDR1|p.P593Qfs*60|1|0.38|ENSG00000204580|chr6:30896770-30896770|C/-|frameshift_variant;DDR1|p.P483Rfs*170|1|0.29|ENSG00000204580|chr6:30894602-30894602|C/-|frameshift_variant;DDR1|p.G583Afs*70|1|0.31|ENSG00000204580|chr6:30896740-30896740|G/-|frameshift_variant;ENST00000465966.4_1_6:30861134-30864801:+|nuORF nc|ENSG00000204580|Q08345-2|DDR1 nc|ENSG00000204580|Q08345-2|DDR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.25323486328125 3 338.232813 1011.67661 NaN NaN NaN NaN NaN NaN NaN 179.67 1 179.67 179.17 180.17 0 0 0 0 0.23508 1 37222 37222 0 0 1 27426 7592 18228 18234 27027 27027 0.17123970206614558 LLLLIIALM 9 Unmodified _LLLLIIALM_ 0 0 0 nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;DDR1|p.P593Qfs*60|1|0.38|ENSG00000204580|chr6:30896770-30896770|C/-|frameshift_variant;DDR1|p.P483Rfs*170|1|0.29|ENSG00000204580|chr6:30894602-30894602|C/-|frameshift_variant;DDR1|p.G583Afs*70|1|0.31|ENSG00000204580|chr6:30896740-30896740|G/-|frameshift_variant;ENST00000465966.4_1_6:30861134-30864801:+|nuORF nc|ENSG00000204580|Q08345-2|DDR1 nc|ENSG00000204580|Q08345-2|DDR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.2325134277344 3 338.232813 1011.67661 NaN NaN NaN NaN NaN NaN NaN 179.75 1 179.75 179.25 180.25 0 0 0 0 0.23508 1 37237 37237 0 0 1 27427 7592 18228 18234 27028 27028 0.17123970206614558 LLLLILIHIT 10 Unmodified _LLLLILIHIT_ 0 0 0 REV__ENSG00000224420|ENST00000420022|ADM5 REV__ENSG00000224420|ENST00000420022|ADM5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 581.400146484375 2 581.40211 1160.78967 NaN NaN NaN NaN NaN NaN NaN 167.45 1 162.66 162.16 163.16 -4.7898 0 0 0 2.8426 1 33771 33771 0.13989 0.04505 1 + 27428 19718 18229 18235 27029 27029 0.2157036192418218 LLLLITKF 8 Unmodified _LLLLITKF_ 0 0 0 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1;REV__nc|ENSG00000163539|O75122|CLASP2 REV__nc|ENSG00000163539|O75122|CLASP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.254150390625 2 480.828246 959.64194 0.11706 5.6287E-05 0.055209 2.6546E-05 0.17227 8.2833E-05 480.8282282359135 108.5 0.6664 108.5 108.18 108.84 0 32 18 2 0 0 0 0.73936 1 21299 21299 8.5933 0 1 4254200 + 27429 13441;14309 18230 18236 27030 27030 0.16050470390189275 LLLLITKF 8 Unmodified _LLLLITKF_ 0 0 0 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1;REV__nc|ENSG00000163539|O75122|CLASP2 REV__nc|ENSG00000163539|O75122|CLASP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2489318847656 2 480.828246 959.64194 0.52517 0.00025252 -0.28256 -0.00013586 0.24261 0.00011665 480.8280190774722 112.57 0.76321 108.3 107.98 108.74 -4.2725 46 21 3 0 0 0 0.83982 1 21742 21742 2.5775 0 1 2539000 + 27430 13441;14309 18230 18236 27031 27031 0.16050470390189275 LLLLITKF 8 Unmodified _LLLLITKF_ 0 0 0 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1;REV__nc|ENSG00000163539|O75122|CLASP2 REV__nc|ENSG00000163539|O75122|CLASP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2426452636719 2 480.828246 959.64194 0.52517 0.00025252 -0.28256 -0.00013586 0.24261 0.00011665 480.8280190774722 112.57 0.76321 108.3 107.98 108.74 -4.2725 46 21 3 0 0 0 1.0095 1 21757 21757 5.7604 2.8712 1 2539000 + 27431 13441;14309 18230 18236 27032 27032 0.16050470390189275 LLLLKKHL 8 Unmodified _LLLLKKHL_ 0 0 0 ENSG00000123684|ENST00000366997|LPGAT1 ENSG00000123684|ENST00000366997|LPGAT1 ENSG00000123684|ENST00000366997|LPGAT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 489.34661865234375 2 489.347138 976.679722 NaN NaN NaN NaN NaN NaN NaN 169.75 1 164.88 164.38 165.38 -4.873 0 0 0 0.21486 1 33549 33549 0 0 1 27432 3279 18231 18237 27033 27033 0.19044981375645875 LLLLKKKKK 9 Unmodified _LLLLKKKKK_ 0 0 0 REV__ENSG00000198929|ENST00000361897|NOS1AP REV__ENSG00000198929|ENST00000361897|NOS1AP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 556.4177856445312 2 556.418094 1110.82164 NaN NaN NaN NaN NaN NaN NaN 167.92 1 167.92 167.42 168.42 0 0 0 0 0.19635 1 34347 34347 0 0 1 + 27433 19485 18232 18238 27034 27034 0.27065774397988207 LLLLKLLFI 9 Unmodified _LLLLKLLFI_ 0 0 0 ENST00000526343.5_1_11:102100776-102101010:+|nuORF ENST00000526343.5_1_11:102100776-102101010:+|nuORF ENST00000526343.5_1_11:102100776-102101010:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7754516601562 2 543.388471 1084.76239 0.49986 0.00027162 -2.5419 -0.0013812 -2.042 -0.0011096 543.8894967948844 123.03 0.18034 118.3 118.15 118.33 -4.731 5 4 2 0 0 0 0.87788 1 23606 23606 5.2307 0 1 711640 27434 10913 18233 18239 27035 27035 0.22339878383786527 LLLLLIKPG 9 Unmodified _LLLLLIKPG_ 0 0 0 REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2 REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2698974609375 2 490.349346 978.684139 NaN NaN NaN NaN NaN NaN NaN 150.9 1 145.66 145.16 146.16 -5.2365 0 0 0 0.23508 1 29244 29244 0.6015 0.076735 1 + 27435 15984 18234 18240 27036 27036 0.19394445798559445 LLLLLIKPG 9 Unmodified _LLLLLIKPG_ 0 0 0 REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2 REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2645568847656 2 490.349346 978.684139 NaN NaN NaN NaN NaN NaN NaN 146.3 1 141.3 140.8 141.8 -5 0 0 0 0.19624 1 28308 28308 0.073264 0.073264 1 + 27436 15984 18234 18240 27037 27037 0.19394445798559445 LLLLLKLLQL 10 Unmodified _LLLLLKLLQL_ 0 0 0 REV__LHCGR|p.K258Nfs*16|2|0.31|ENSG00000138039|chr2:48698707-48698707|T/-|frameshift_variant REV__LHCGR|p.K258Nfs*16|2|0.31|ENSG00000138039|chr2:48698707-48698707|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2763061523438 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 77.661 1 77.661 77.161 78.161 0 0 0 0 0.22588 1 15104 15104 0.40072 0.050084 1 + 27437 16430 18235 18241 27038 27038 0.2543522147532258 LLLLLLALAPL 11 Unmodified _LLLLLLALAPL_ 0 0 0 REV__ENSG00000187957|ENST00000341772|DNER REV__ENSG00000187957|ENST00000341772|DNER MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 581.7245483398438 2 581.91231 1161.81007 NaN NaN NaN NaN NaN NaN NaN 167.52 1 162.73 162.23 163.23 -4.7898 0 0 0 0.23698 1 33792 33792 0.35063 0 1 + 27438 19121 18236 18242 27039 27039 0.23563532583966662 LLLLLLCQ 8 Unmodified _LLLLLLCQ_ 0 0 0 FST|p.Y214Lfs*23|1|0.04|ENSG00000134363|chr5:53484210-53484211|-/A|frameshift_variant;FST|p.K255Nfs*43|1|0.06|ENSG00000134363|chr5:53485035-53485035|A/-|frameshift_variant;nc|ENSG00000134363|P19883-2|FST;ENSG00000134363|ENST00000256759|FST FST|p.Y214Lfs*23|1|0.04|ENSG00000134363|chr5:53484210-53484211|-/A|frameshift_variant FST|p.Y214Lfs*23|1|0.04|ENSG00000134363|chr5:53484210-53484211|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 8.3346 1 7.2701 6.7701 7.7701 -1.0645 0 0 0 0.2396 1 809 809 0.30703 0 1 27439 3848 18237 18243 27040 27040 0.11602251104341121 LLLLLLFVLF 10 Unmodified _LLLLLLFVLF_ 0 0 0 REV__ENSG00000274209|ENST00000620264|ANTXRL REV__ENSG00000274209|ENST00000620264|ANTXRL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2860717773438 2 602.409404 1202.80425 NaN NaN NaN NaN NaN NaN NaN 168.92 1 164.05 163.55 164.55 -4.873 0 0 0 2.8426 1 33341 33341 0.043787 0.042406 1 + 27440 19925 18238 18244 27041 27041 0.21096434072319425 LLLLLLFVLF 10 Unmodified _LLLLLLFVLF_ 0 0 0 REV__ENSG00000274209|ENST00000620264|ANTXRL REV__ENSG00000274209|ENST00000620264|ANTXRL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2860717773438 2 602.409404 1202.80425 NaN NaN NaN NaN NaN NaN NaN 168.95 1 164.08 163.58 164.58 -4.873 0 0 0 0.22588 1 33346 33346 0.45834 0.057624 1 + 27441 19925 18238 18244 27042 27042 0.21096434072319425 LLLLLLFVLF 10 Unmodified _LLLLLLFVLF_ 0 0 0 REV__ENSG00000274209|ENST00000620264|ANTXRL REV__ENSG00000274209|ENST00000620264|ANTXRL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2933349609375 2 602.409404 1202.80425 NaN NaN NaN NaN NaN NaN NaN 169.39 1 164.51 164.01 165.01 -4.873 0 0 0 2.8426 1 33450 33450 0.043787 0.017581 1 + 27442 19925 18238 18244 27043 27043 0.21096434072319425 LLLLLLFVLF 10 Unmodified _LLLLLLFVLF_ 0 0 0 REV__ENSG00000274209|ENST00000620264|ANTXRL REV__ENSG00000274209|ENST00000620264|ANTXRL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2844848632812 2 602.409404 1202.80425 NaN NaN NaN NaN NaN NaN NaN 169.63 1 164.75 164.25 165.25 -4.873 0 0 0 0.22588 1 33514 33514 0.45834 0.057624 1 + 27443 19925 18238 18244 27044 27044 0.21096434072319425 LLLLLLGVPPR 11 Unmodified _LLLLLLGVPPR_ 0 0 0 WFIKKN2|p.S143Pfs*32|1|0.54|ENSG00000173714|chr17:50839711-50839712|-/CC|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2 WFIKKN2|p.S143Pfs*32|1|0.54|ENSG00000173714|chr17:50839711-50839712|-/CC|frameshift_variant WFIKKN2|p.S143Pfs*32|1|0.54|ENSG00000173714|chr17:50839711-50839712|-/CC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2828979492188 2 602.413009 1202.81146 NaN NaN NaN NaN NaN NaN NaN 169.19 1 164.32 163.82 164.82 -4.873 0 0 0 0.22632 1 33403 33403 0.026206 0 1 27444 6307 18239 18245 27045 27045 0.21817166672735766 LLLLLLLLY 9 Unmodified _LLLLLLLLY_ 0 0 0 ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7758178710938 2 543.880479 1085.74641 NaN NaN NaN NaN NaN NaN NaN 100.18 1 100.18 99.675 100.68 0 0 0 0 0.23508 1 19652 19652 0.6015 0.6015 1 27445 6796 18240 18246 27046 27046 0.20696172146904246 LLLLLLLLY 9 Unmodified _LLLLLLLLY_ 0 0 0 ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7789306640625 2 543.880479 1085.74641 NaN NaN NaN NaN NaN NaN NaN 51.445 1 48.563 48.063 49.063 -2.8824 0 0 0 0.23508 1 9773 9773 5.2307 2.9279 1 27446 6796 18240 18246 27047 27047 0.20696172146904246 LLLLLLLLY 9 Unmodified _LLLLLLLLY_ 0 0 0 ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7850952148438 2 543.880479 1085.74641 NaN NaN NaN NaN NaN NaN NaN 125.24 1 120.64 120.14 121.14 -4.5984 0 0 0 0.19624 1 24694 24694 0.073264 0 1 27447 6796 18240 18246 27048 27048 0.20696172146904246 LLLLLLLLY 9 Unmodified _LLLLLLLLY_ 0 0 0 ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7772216796875 2 543.880479 1085.74641 NaN NaN NaN NaN NaN NaN NaN 99.494 1 95.538 95.038 96.038 -3.9564 0 0 0 0.19624 1 19102 19102 0.073264 0.073264 1 27448 6796 18240 18246 27049 27049 0.20696172146904246 LLLLLLLPPRV 11 Unmodified _LLLLLLLPPRV_ 0 0 0 PTPRN2|p.Q286Pfs*35|1|0.14|ENSG00000155093|chr7:158166984-158166985|-/G|frameshift_variant;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2 PTPRN2|p.Q286Pfs*35|1|0.14|ENSG00000155093|chr7:158166984-158166985|-/G|frameshift_variant PTPRN2|p.Q286Pfs*35|1|0.14|ENSG00000155093|chr7:158166984-158166985|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.765625 2 630.444309 1258.87407 NaN NaN NaN NaN NaN NaN NaN 71.514 1 68.047 67.547 68.547 -3.467 0 0 0 0.22632 1 13555 13555 0.094841 0 1 27449 5032 18241 18247 27050 27050 0.2549831274091048 LLLLLLLSF 9 Unmodified _LLLLLLLSF_ 0 0 0 STRC|p.P154Lfs*30|1|0.3|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant;STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC STRC|p.P154Lfs*30|1|0.3|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant STRC|p.P154Lfs*30|1|0.3|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2619018554688 2 522.857004 1043.69945 0.31191 0.00016308 -3.5649 -0.0018639 -3.253 -0.0017009 522.8569847971022 139.99 0.13934 135.14 135.02 135.16 -4.8492 5 3 2 0 0 0 0.87888 1 26981 26981 2.0598 0 1 972400 27450 7869 18242 18248 27051 27051 0.17935312595750474 LLLLLLPGPP 10 Unmodified _LLLLLLPGPP_ 0 0 0 ENST00000586075.1_2_19:14044750-14048885:-|nuORF;ENST00000254320.7_1_19:14044750-14048840:-|nuORF;nc|ENSG00000132000|Q6PEZ8-2|PODNL1;nc|ENSG00000132000|Q6PEZ8-3|PODNL1;nc|ENSG00000132000|Q6PEZ8|PODNL1;ENSG00000132000|ENST00000588872|PODNL1 ENST00000586075.1_2_19:14044750-14048885:-|nuORF ENST00000586075.1_2_19:14044750-14048885:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 349.5538330078125 3 349.238844 1044.6947 NaN NaN NaN NaN NaN NaN NaN 15.065 1 13.855 13.355 14.355 -1.2106 0 0 0 2.8426 1 2048 2048 0.043787 0 1 27451 3703 18243 18249 27052 27052 0.17414428452980246 LLLLLLPRPR 10 Unmodified _LLLLLLPRPR_ 0 0 0 REV__ENSG00000184709|ENST00000371542|LRRC26 REV__ENSG00000184709|ENST00000371542|LRRC26 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3012084960938 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 151.57 1 146.81 146.31 147.31 -4.7523 0 0 0 0.22588 1 30114 30114 1.8442 0 1 + 27452 18912 18244 18250 27053 27053 0.2293998876684782 LLLLLLRL 8 Unmodified _LLLLLLRL_ 0 0 0 ENSG00000149177|ENST00000418331|PTPRJ;nc|ENSG00000149177|Q12913-3|PTPRJ;ST8SIA6|p.A49Qfs*3|1|0.51|ENSG00000148488|chr10:17453615-17453615|G/-|frameshift_variant;ENST00000300952.6_1_19:1257449-1257602:+|nuORF;ST8SIA6|p.A252Pfs*53|5|0.43|ENSG00000148488|chr10:17321322-17321322|T/-|frameshift_variant;ENSG00000148488|ENST00000377602|ST8SIA6;nc|ENSG00000149177|Q12913-2|PTPRJ;ENST00000498707.5_1_3:64673464-64673620:-|nuORF ENSG00000149177|ENST00000418331|PTPRJ;ENST00000498707.5_1_3:64673464-64673620:-|nuORF;REV__MLEC|p.V76Wfs*9|1|0.21|ENSG00000110917|chr12:120687520-120687520|G/-|frameshift_variant;REV__nc|ENSG00000165731|P07949-2|RET ENST00000498707.5_1_3:64673464-64673620:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.90533447265625 3 322.907318 965.700124 NaN NaN NaN NaN NaN NaN NaN 9.2644 1 9.2644 8.7644 9.7644 0 0 0 0 0.21486 1 1053 1053 0 0 1 27453 10609;4772;15223;17798 18245 18251 27054 27054 0.21590152035446408 LLLLLLRL 8 Unmodified _LLLLLLRL_ 0 0 0 ENSG00000149177|ENST00000418331|PTPRJ;nc|ENSG00000149177|Q12913-3|PTPRJ;ST8SIA6|p.A49Qfs*3|1|0.51|ENSG00000148488|chr10:17453615-17453615|G/-|frameshift_variant;ENST00000300952.6_1_19:1257449-1257602:+|nuORF;ST8SIA6|p.A252Pfs*53|5|0.43|ENSG00000148488|chr10:17321322-17321322|T/-|frameshift_variant;ENSG00000148488|ENST00000377602|ST8SIA6;nc|ENSG00000149177|Q12913-2|PTPRJ;ENST00000498707.5_1_3:64673464-64673620:-|nuORF ENSG00000149177|ENST00000418331|PTPRJ;ENST00000498707.5_1_3:64673464-64673620:-|nuORF;REV__MLEC|p.V76Wfs*9|1|0.21|ENSG00000110917|chr12:120687520-120687520|G/-|frameshift_variant;REV__nc|ENSG00000165731|P07949-2|RET ENST00000498707.5_1_3:64673464-64673620:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.9236145019531 3 322.907318 965.700124 NaN NaN NaN NaN NaN NaN NaN 9.3794 1 8.3149 7.8149 8.8149 -1.0645 0 0 0 0.21486 1 998 998 0 0 1 27454 10609;4772;15223;17798 18245 18251 27055 27055 0.21590152035446408 LLLLLLTTL 9 Unmodified _LLLLLLTTL_ 0 0 0 ENST00000397573.5_1_15:40398252-40398620:-|nuORF ENST00000397573.5_1_15:40398252-40398620:-|nuORF ENST00000397573.5_1_15:40398252-40398620:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.23834228515625 3 338.238733 1011.69437 NaN NaN NaN NaN NaN NaN NaN 7.4959 1 6.8168 6.3168 7.3168 -0.67913 0 0 0 0.23508 1 687 687 0 0 1 27455 9468 18246 18252 27056 27056 0.18899008733114897 LLLLLLVLLE 10 Unmodified _LLLLLLVLLE_ 0 0 0 nc|ENSG00000196188|P14091-2|CTSE;ENSG00000196188|ENST00000358184|CTSE;nc|ENSG00000196188|P14091-3|CTSE REV__ENST00000319190.9_1_2:47168484-47168661:+|nuORF REV__ENST00000319190.9_1_2:47168484-47168661:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3352661132812 2 576.404318 1150.79408 NaN NaN NaN NaN NaN NaN NaN 157.35 1 152.08 151.58 152.58 -5.2712 0 0 0 0.22588 1 30523 30523 0.40072 0 1 27456 7242 18247 18253 27057 27057 0.22471826347054957 LLLLLLYKY 9 Unmodified _LLLLLLYKY_ 0 0 0 ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3265991210938 2 576.375561 1150.73657 NaN NaN NaN NaN NaN NaN NaN 127.98 1 127.98 127.48 128.48 0 0 0 0 0.19624 1 25271 25271 0.073264 0 1 27457 6796 18248 18254 27058 27058 0.16722984141506458 LLLLLLYKY 9 Unmodified _LLLLLLYKY_ 0 0 0 ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3304443359375 2 576.375561 1150.73657 NaN NaN NaN NaN NaN NaN NaN 138.44 1 133.8 133.3 134.3 -4.6413 0 0 0 0.19624 1 27334 27334 0.073264 0 1 27458 6796 18248 18254 27059 27059 0.16722984141506458 LLLLLPPPLV 10 Unmodified _LLLLLPPPLV_ 0 0 0 REV__ENST00000371558.6_1_X:118708567-118708919:+|nuORF REV__ENST00000371558.6_1_X:118708567-118708919:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 544.524169921875 2 544.378103 1086.74165 NaN NaN NaN NaN NaN NaN NaN 174.47 1 169.68 169.18 170.18 -4.7898 0 0 0 2.8426 1 35646 35646 0 0 1 + 27459 21007 18249 18255 27060 27060 0.2017528800411128 LLLLLQLLR 9 Unmodified _LLLLLQLLR_ 0 0 0 REV__ENST00000426654.6_1_16:69660389-69681075:+|nuORF REV__ENST00000426654.6_1_16:69660389-69681075:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7737426757812 2 547.886627 1093.7587 NaN NaN NaN NaN NaN NaN NaN 166.86 1 162.07 161.57 162.57 -4.7898 0 0 0 0.23508 1 33573 33573 2.0598 0.40713 1 + 27460 21569 18250 18256 27061 27061 0.21557208609920053 LLLLLSQAVP 10 Unmodified _LLLLLSQAVP_ 0 0 0 REV__ENST00000371477.3_1_6:44355409-44355517:+|nuORF REV__ENST00000371477.3_1_6:44355409-44355517:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2745361328125 2 533.847167 1065.67978 0.12039 6.4268E-05 2.3797 0.0012704 2.5001 0.0013347 534.349933979699 130.99 0.18015 130.99 130.83 131.01 0 5 4 2 0 0 0 1.133 1 25899 25899 0.043787 0 1 1579600 + 27461 21006 18251 18257 27062 27062 0.14956936585008407 LLLLLWLF 8 Unmodified _LLLLLWLF_ 0 0 0 REV__ENST00000332780.3_1_3:49213230-49213359:+|nuORF REV__ENST00000332780.3_1_3:49213230-49213359:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.2066345214844 3 344.228168 1029.66268 NaN NaN NaN NaN NaN NaN NaN 56.961 1 54.066 53.566 54.566 -2.8944 0 0 0 0.21486 1 10927 10927 0.45834 0 1 + 27462 20632 18252 18258 27063 27063 0.1490306076982506 LLLLLYKKQ 9 Unmodified _LLLLLYKKQ_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 565.9730224609375 2 566.378635 1130.74272 0.10404 5.8925E-05 3.0597 0.0017329 3.1637 0.0017919 566.3781916208458 148.75 0.21088 143.59 143.5 143.71 -5.1558 6 5 2 0 0 0 0.65319 1 28789 28789 0.073264 0 1 729860 + 27463 15903 18253 18259 27064 27064 0.18257502373035095 LLLLPSIH 8 Unmodified _LLLLPSIH_ 0 0 0 ENST00000573523.5_1_17:4574736-4578861:-|nuORF;ENSG00000141456|ENST00000572293|PELP1;ENST00000575534.1_1_17:4578567-4578798:-|nuORF ENST00000573523.5_1_17:4574736-4578861:-|nuORF ENST00000573523.5_1_17:4574736-4578861:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7590026855469 2 453.294571 904.574589 0.073311 3.3232E-05 0.25708 0.00011653 0.33039 0.00014976 453.2947024499081 26.061 0.34893 24.426 24.301 24.65 -1.6347 15 9 2 0 0 0 0.89967 1 4346 4346 0.12286 0 1 891760 27464 11436 18254 18260 27065 27065 0.11848440179244335 LLLLPSIH 8 Unmodified _LLLLPSIH_ 0 0 0 ENST00000573523.5_1_17:4574736-4578861:-|nuORF;ENSG00000141456|ENST00000572293|PELP1;ENST00000575534.1_1_17:4578567-4578798:-|nuORF ENST00000573523.5_1_17:4574736-4578861:-|nuORF ENST00000573523.5_1_17:4574736-4578861:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.294571 904.574589 1.0124 0.00045891 -0.69338 -0.00031431 0.31901 0.00014461 453.2941234611263 26.247 0.27237 24.465 24.313 24.586 -1.7821 0.034441 -0.00057343 NaN 0.12286 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 784400 27465 11436 18254 18260 0.11848440179244335 LLLLPSIH 8 Unmodified _LLLLPSIH_ 0 0 0 ENST00000573523.5_1_17:4574736-4578861:-|nuORF;ENSG00000141456|ENST00000572293|PELP1;ENST00000575534.1_1_17:4578567-4578798:-|nuORF ENST00000573523.5_1_17:4574736-4578861:-|nuORF ENST00000573523.5_1_17:4574736-4578861:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.294571 904.574589 -0.035844 -1.6248E-05 0.24784 0.00011235 0.212 9.6099E-05 453.2945720194225 26.323 0.31124 24.401 24.229 24.54 -1.9222 -0.029619 0.00027988 NaN 0.12286 14 8 3 NaN NaN NaN NaN 0 NaN NaN 0 707090 27466 11436 18254 18260 0.11848440179244335 LLLLPVAAP 9 Unmodified _LLLLPVAAP_ 0 0 0 REV__ENSG00000172382|ENST00000302641|PRSS27 REV__ENSG00000172382|ENST00000302641|PRSS27 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75994873046875 2 453.804771 905.59499 0.04109 1.8647E-05 0.026925 1.2219E-05 0.068015 3.0865E-05 453.80472330532314 60.891 0.45327 57.521 57.238 57.691 -3.3694 21 12 2 0 0 0 0.61034 1 11302 11302 1.2148 0 1 1321100 + 27467 18285 18255 18261 27066 27066 0.13841610839040186 LLLLPVAAP 9 Unmodified _LLLLPVAAP_ 0 0 0 REV__ENSG00000172382|ENST00000302641|PRSS27 REV__ENSG00000172382|ENST00000302641|PRSS27 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 453.804771 905.59499 0.02275 1.0324E-05 0.46322 0.00021021 0.48597 0.00022054 453.80492646785297 57.276 0.45021 57.276 57.057 57.508 0 -0.17773 0.00026098 NaN 1.2148 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1886100 + 27468 18285 18255 18261 0.13841610839040186 LLLLPVAAP 9 Unmodified _LLLLPVAAP_ 0 0 0 REV__ENSG00000172382|ENST00000302641|PRSS27 REV__ENSG00000172382|ENST00000302641|PRSS27 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.804771 905.59499 -0.1092 -4.9555E-05 0.084323 3.8266E-05 -0.024875 -1.1288E-05 453.8047814268065 60.434 0.48 57.501 57.272 57.752 -2.9333 0.047378 -8.2907E-05 NaN 1.2148 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1690900 + 27469 18285 18255 18261 0.13841610839040186 LLLLPVAAP 9 Unmodified _LLLLPVAAP_ 0 0 0 REV__ENSG00000172382|ENST00000302641|PRSS27 REV__ENSG00000172382|ENST00000302641|PRSS27 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 453.804771 905.59499 0.04109 1.8647E-05 0.026925 1.2219E-05 0.068015 3.0865E-05 453.80472330532314 60.891 0.45327 57.521 57.238 57.691 -3.3694 0.067327 -0.000135 NaN 1.2148 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1321100 + 27470 18285 18255 18261 0.13841610839040186 LLLLPVAAP 9 Unmodified _LLLLPVAAP_ 0 0 0 REV__ENSG00000172382|ENST00000302641|PRSS27 REV__ENSG00000172382|ENST00000302641|PRSS27 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.804771 905.59499 0.12293 5.5787E-05 0.058955 2.6754E-05 0.18189 8.2541E-05 453.8046901629778 60.74 0.52605 57.517 57.208 57.734 -3.2237 0.063025 -0.00010593 NaN 1.2148 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1567100 + 27471 18285 18255 18261 0.13841610839040186 LLLLRRALL 9 Unmodified _LLLLRRALL_ 0 0 0 REV__ENST00000264036.5_1_11:119185954-119187791:-|nuORF REV__ENST00000264036.5_1_11:119185954-119187791:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.258056640625 2 540.884419 1079.75428 0.5263 0.00028467 1.5592 0.00084332 2.0854 0.001128 540.8862924527091 160.33 0.10295 155.08 154.99 155.1 -5.2526 4 2 2 0 0 0 0.88433 1 31123 31123 0 0 1 724000 + 27472 20226 18256 18262 27067 27067 0.21759744187033903 LLLLRRRRG 9 Unmodified _LLLLRRRRG_ 0 0 0 REV__ENST00000324856.11_1_1:27022599-27022719:+|nuORF REV__ENST00000324856.11_1_1:27022599-27022719:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3193359375 2 576.893641 1151.77273 0.21295 0.00012285 -2.7456 -0.0015839 -2.5326 -0.0014611 576.8910629900997 133.69 0.145 128.88 128.81 128.95 -4.8175 5 3 2 0 0 0 0.87788 1 25718 25718 5.2307 0 1 2594700 + 27473 20574 18257 18263 27068 27068 0.20291298881579678 LLLLSPPPG 9 Unmodified _LLLLSPPPG_ 0 0 0 REV__ENSG00000116260|ENST00000367602|QSOX1 REV__ENSG00000116260|ENST00000367602|QSOX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.76116943359375 2 453.786579 905.558604 0.40215 0.00018249 -0.12834 -5.8237E-05 0.27382 0.00012425 453.7864085221793 29.29 0.48478 27.293 27.007 27.491 -1.9962 16 13 2 0 0 0 0.73309 1 4925 4925 4.756 2.4533 1 283150 + 27474 15477 18258 18264 27069 27069 0.10204733942327948 LLLLSPPPG 9 Unmodified _LLLLSPPPG_ 0 0 0 REV__ENSG00000116260|ENST00000367602|QSOX1 REV__ENSG00000116260|ENST00000367602|QSOX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.786579 905.558604 0.54902 0.00024914 -0.49247 -0.00022348 0.056552 2.5663E-05 453.7862586983886 29.238 0.49746 27.282 27.049 27.547 -1.9561 0.026857 -0.00025293 NaN 4.756 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 551040 + 27475 15477 18258 18264 0.10204733942327948 LLLLSPPPG 9 Unmodified _LLLLSPPPG_ 0 0 0 REV__ENSG00000116260|ENST00000367602|QSOX1 REV__ENSG00000116260|ENST00000367602|QSOX1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.786579 905.558604 0.40215 0.00018249 -0.12834 -5.8237E-05 0.27382 0.00012425 453.7864085221793 29.29 0.48478 27.293 27.007 27.491 -1.9962 0.037967 7.7551E-05 NaN 4.756 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 283150 + 27476 15477 18258 18264 0.10204733942327948 LLLLVLERLY 10 Unmodified _LLLLVLERLY_ 0 0 0 nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF nc|ENSG00000115970|Q6YHU6-2|THADA nc|ENSG00000115970|Q6YHU6-2|THADA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7568359375 2 622.902474 1243.7904 NaN NaN NaN NaN NaN NaN NaN 93.025 1 93.025 92.525 93.525 0 0 0 0 0.22588 1 18193 18193 4.3292 2.485 1 27477 2897 18259 18265 27070 27070 0.1782515657323529 LLLLVLERLY 10 Unmodified _LLLLVLERLY_ 0 0 0 nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF nc|ENSG00000115970|Q6YHU6-2|THADA nc|ENSG00000115970|Q6YHU6-2|THADA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7765502929688 2 622.902474 1243.7904 NaN NaN NaN NaN NaN NaN NaN 115.98 1 111.62 111.12 112.12 -4.3585 0 0 0 0.22588 1 22329 22329 1.8442 0 1 27478 2897 18259 18265 27071 27071 0.1782515657323529 LLLLWLFLQRQ 11 Unmodified _LLLLWLFLQRQ_ 0 0 0 REV__ENST00000332780.3_1_3:49213230-49213359:+|nuORF REV__ENST00000332780.3_1_3:49213230-49213359:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 721.5084838867188 2 721.947747 1441.88094 0.90451 0.00065301 1.0353 0.00074742 1.9398 0.0014004 722.4496380400997 163.72 0.10225 158.93 158.88 158.99 -4.7898 4 2 2 0 0 0 0.8912 1 32651 32651 0.00056442 0 1 9815700 + 27479 20632 18260 18266 27072 27072 0.1776762562149088 LLLMIAALA 9 Unmodified _LLLMIAALA_ 0 0 0 REV__nc|ENSG00000138759|Q86XX4|FRAS1 REV__nc|ENSG00000138759|Q86XX4|FRAS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1728515625 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 154.51 1 149.26 148.76 149.76 -5.2526 0 0 0 0.23508 1 29960 29960 1.1933 0 1 + 27480 16487 18261 18267 27073 27073 0.11602251104341121 LLLMWMRERFK 11 Unmodified _LLLMWMRERFK_ 0 0 0 REV__ENSG00000186810|ENST00000373693|CXCR3 REV__ENSG00000186810|ENST00000373693|CXCR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.216064453125 4 381.465084 1521.83123 -2.2806 -0.00086997 -0.78955 -0.00030119 -3.0701 -0.0011712 381.46470650632546 14.142 0.21214 12.931 12.854 13.066 -1.2106 8 5 2 0 0 0 0.89134 1 1842 1842 0 0 1 283220 + 27481 19054 18262 18268 27074 27074 0.09118851349512624 LLLNFLAC 8 Unmodified _LLLNFLAC_ 0 0 0 ENST00000472397.5_1_1:155226487-155230214:-|nuORF;ENST00000490999.5_1_1:155226066-155230310:-|nuORF;nc|ENSG00000116521|O14828-2|SCAMP3;ENSG00000116521|ENST00000302631|SCAMP3 ENST00000472397.5_1_1:155226487-155230214:-|nuORF ENST00000472397.5_1_1:155226487-155230214:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7598876953125 2 453.759507 905.50446 NaN NaN NaN NaN NaN NaN NaN 87.093 1 83.364 82.864 83.864 -3.7289 0 0 0 0.21486 1 16660 16660 10.183 0 1 27482 2930 18263 18269 27075 27075 0.047928185191153716 LLLNLQAVIAH 11 Unmodified _LLLNLQAVIAH_ 0 0 0 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2962646484375 2 602.874248 1203.73394 0.39434 0.00023774 2.7362 0.0016496 3.1305 0.0018873 602.8767139423287 147.03 0.17517 147.03 146.91 147.08 0 6 4 2 0 0 0 0.96063 1 29386 29386 3.5965 0 1 2872100 27483 2263 18264 18270 27076 27076 0.140225287365638 LLLPGPSAA 9 Unmodified _LLLPGPSAA_ 0 0 0 PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant;ENST00000561048.1_1_15:64452264-64455191:-|nuORF;ENSG00000166794|ENST00000300026|PPIB PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4662475585938 1 838.503281 837.496004 0.48375 0.00040562 -0.21902 -0.00018365 0.26472 0.00022197 838.5029491478555 119 0.87096 119 118.54 119.41 0 53 24 3 0 0 0 0.043281 3 23409 23409;23412;23481 48.346 0 1 15595000 27484 5745 18265 18271 27077;27078;27079 27077 0.07075587874123812 LLLPGPSAA 9 Unmodified _LLLPGPSAA_ 0 0 0 PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant;ENST00000561048.1_1_15:64452264-64455191:-|nuORF;ENSG00000166794|ENST00000300026|PPIB PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.485595703125 1 838.503281 837.496004 0.57421 0.00048148 -0.3178 -0.00026648 0.25641 0.000215 838.5029422314732 123.55 0.88477 118.98 118.56 119.45 -4.5757 60 24 3 0 0 0 0.061198 3 24325 24325;24385;24388 39.957 0 1 16776000 27485 5745 18265 18271 27080;27081;27082 27080 0.07075587874123812 LLLPGPSAA 9 Unmodified _LLLPGPSAA_ 0 0 0 PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant;ENST00000561048.1_1_15:64452264-64455191:-|nuORF;ENSG00000166794|ENST00000300026|PPIB PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.478759765625 1 838.503281 837.496004 0.66642 0.00055879 -0.32466 -0.00027223 0.34175 0.00028656 838.5029273207484 123.84 0.88585 119.1 118.64 119.53 -4.731 52 24 3 0 0 0 0.072678 1 23810 23810 4.477 0 1 11396000 27486 5745 18265 18271 27083 27083 0.07075587874123812 LLLPGPSAA 9 Unmodified _LLLPGPSAA_ 0 0 0 PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant;ENST00000561048.1_1_15:64452264-64455191:-|nuORF;ENSG00000166794|ENST00000300026|PPIB PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4808959960938 1 838.503281 837.496004 0.43989 0.00036885 -0.1908 -0.00015999 0.24909 0.00020886 838.5030453134108 123.7 0.85258 119.1 118.58 119.44 -4.5926 54 24 3 0 0 0 0.26282 1 23830 23830 1.6919 0 1 9490700 27487 5745 18265 18271 27084 27084 0.07075587874123812 LLLPLLQPQLL 11 Unmodified _LLLPLLQPQLL_ 0 0 0 nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;CDK13|p.V736Yfs*32|1|0.2|ENSG00000065883|chr7:40001877-40001877|A/-|frameshift_variant;CDK13|p.K911Nfs*13|1|0.17|ENSG00000065883|chr7:40063048-40063048|A/-|frameshift_variant;CDK13|p.A162Pfs*174|1|0.41|ENSG00000065883|chr7:39951118-39951118|G/-|frameshift_variant nc|ENSG00000065883|Q14004-2|CDK13;CDK13|p.A162Pfs*174|1|0.41|ENSG00000065883|chr7:39951118-39951118|G/-|frameshift_variant nc|ENSG00000065883|Q14004-2|CDK13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.759765625 2 630.918124 1259.8217 NaN NaN NaN NaN NaN NaN NaN 128.2 1 128.2 127.7 128.7 0 0 0 0 0.22632 1 25318 25318 0.026206 0 1 27488 1361;468 18266 18272 27085 27085 0.20217729607338697 LLLPLVLLPP 10 Unmodified _LLLPLVLLPP_ 0 0 0 ENSG00000188038|ENST00000339176|NRN1L ENSG00000188038|ENST00000339176|NRN1L ENSG00000188038|ENST00000339176|NRN1L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 363.5288391113281 3 363.254494 1086.74165 NaN NaN NaN NaN NaN NaN NaN 16.664 1 15.311 14.811 15.811 -1.3534 0 0 0 0.22588 1 2374 2374 0.15932 0 1 27489 7145 18267 18273 27086 27086 0.20175288004134018 LLLPNLWMNLT 11 Unmodified _LLLPNLWMNLT_ 0 0 0 ENST00000392062.6_1_2:227729719-227729833:+|nuORF ENST00000392062.6_1_2:227729719-227729833:+|nuORF ENST00000392062.6_1_2:227729719-227729833:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 664.3733520507812 2 664.375766 1326.73698 NaN NaN NaN NaN NaN NaN NaN 168.42 1 163.47 162.97 163.97 -4.948 0 0 0 0.19557 1 33203 33203 1.4074 1.376 1 27490 9368 18268 18274 27087 27087 0.08668035799041718 LLLPSVFSSC 10 Unmodified _LLLPSVFSSC_ 0 0 0 REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2863159179688 2 533.286085 1064.55762 0.43402 0.00023146 0.62426 0.00033291 1.0583 0.00056437 533.7877490390232 137.81 1.0559 132.88 132.33 133.39 -4.9216 61 29 3 0 0 0 0.57735 1 26461 26461 20.454 4.6064 1 2457700 + 27491 23486 18269 18275 27088 27088 0.027921515111302142 LLLPSVFSSC 10 Unmodified _LLLPSVFSSC_ 0 0 0 REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2864990234375 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 137.79 1 132.95 132.45 133.45 -4.84 0 0 0 0.22569 1 26548 26548 15.847 2.3393 1 + 27492 23486 18269 18275 27089 27089 0.027921515111302142 LLLPSVFSSC 10 Unmodified _LLLPSVFSSC_ 0 0 0 REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2865600585938 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 138.05 1 133.21 132.71 133.71 -4.84 0 0 0 0.22544 1 26599 26599 19.257 3.4098 1 + 27493 23486 18269 18275 27090 27090 0.027921515111302142 LLLPSVFSSC 10 Unmodified _LLLPSVFSSC_ 0 0 0 REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2655029296875 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 138.12 1 133.28 132.78 133.78 -4.84 0 0 0 0.22569 1 26612 26612 15.847 2.3393 1 + 27494 23486 18269 18275 27091 27091 0.027921515111302142 LLLQLSEF 8 Unmodified _LLLQLSEF_ 0 0 0 CON__Q2KJ83 CON__Q2KJ83 CON__Q2KJ83 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7821960449219 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 134.27 1 129.4 128.9 129.9 -4.8726 0 0 0 0.22934 1 25793 25793 1.7423 0 1 + 27495 686 18270 18276 27092 27092 0.06612126217100922 LLLQRAVCQ 9 Unmodified _LLLQRAVCQ_ 0 0 0 ENST00000396894.8_1_X:48334751-48339908:+|nuORF ENST00000396894.8_1_X:48334751-48339908:+|nuORF ENST00000396894.8_1_X:48334751-48339908:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2589721679688 2 522.305144 1042.59573 -0.28394 -0.0001483 2.9264 0.0015285 2.6425 0.0013802 522.8083130489472 68.7 0.28481 65.52 65.374 65.658 -3.1796 10 7 2 0 0 0 0.87258 1 13357 13357 1.8442 0 1 4390100 27496 9452 18271 18277 27093 27093 0.0761408221644615 LLLQSFKR 8 Unmodified _LLLQSFKR_ 0 0 0 nc|ENSG00000158483|Q9NVL1-2|FAM86C1P;nc|ENSG00000158483|Q9NVL1-3|FAM86C1P;nc|ENSG00000158483|Q9NVL1|FAM86C1P nc|ENSG00000158483|Q9NVL1-2|FAM86C1P nc|ENSG00000158483|Q9NVL1-2|FAM86C1P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.5097351074219 3 335.54656 1003.61785 NaN NaN NaN NaN NaN NaN NaN 13.613 1 13.613 13.113 14.113 0 0 0 0 0.2396 1 1977 1977 0.0082765 0 1 27497 12398 18272 18278 27094 27094 0.11618629956524273 LLLRGRRRWLI 11 Unmodified _LLLRGRRRWLI_ 0 0 0 REV__ENST00000373433.8_1_20:36662140-36662245:+|nuORF REV__ENST00000373433.8_1_20:36662140-36662245:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 726.52197265625 2 726.475329 1450.93611 NaN NaN NaN NaN NaN NaN NaN 175 1 175 174.5 175.5 0 0 0 0 0.23698 1 36251 36251 0.35063 0 1 + 27498 21041 18273 18279 27095 27095 0.22867476932651698 LLLRLLAVAT 10 Unmodified _LLLRLLAVAT_ 0 0 0 REV__MLEC|p.V76Wfs*9|1|0.21|ENSG00000110917|chr12:120687520-120687520|G/-|frameshift_variant REV__MLEC|p.V76Wfs*9|1|0.21|ENSG00000110917|chr12:120687520-120687520|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.8698120117188 2 541.868434 1081.72232 NaN NaN NaN NaN NaN NaN NaN 10.613 1 9.7086 9.2086 10.209 -0.90401 0 0 0 0.22588 1 1343 1343 0.40072 0 1 + 27499 15223 18274 18280 27096 27096 0.18472331713223866 LLLRLRVRL 9 Unmodified _LLLRLRVRL_ 0 0 0 REV__ENST00000532085.1_1_11:118900878-118901178:-|nuORF REV__ENST00000532085.1_1_11:118900878-118901178:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3233642578125 2 576.408592 1150.80263 NaN NaN NaN NaN NaN NaN NaN 88.945 1 84.95 84.45 85.45 -3.9953 0 0 0 0.23508 1 16948 16948 2.3027 0 1 + 27500 22782 18275 18281 27097 27097 0.23326237826927354 LLLRLVKIL 9 Unmodified _LLLRLVKIL_ 0 0 0 REV__ENST00000265192.8_1_5:138704483-138704675:+|nuORF REV__ENST00000265192.8_1_5:138704483-138704675:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2770385742188 2 540.896995 1079.77944 0.15434 8.3481E-05 2.5758 0.0013932 2.7301 0.0014767 540.900036732136 139.08 0.18372 134.13 134.02 134.21 -4.952 6 4 2 0 0 0 0.63929 1 26765 26765 0.0033805 0 1 690260 + 27501 20242 18276 18282 27098 27098 0.2427379898961135 LLLRREQWARQ 11 Unmodified _LLLRREQWARQ_ 0 0 0 REV__ENSG00000214160|ENST00000397676|ALG3 REV__ENSG00000214160|ENST00000397676|ALG3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2679138183594 3 490.288031 1467.84226 NaN NaN NaN NaN NaN NaN NaN 46.639 1 43.773 43.273 44.273 -2.8666 0 0 0 0.22632 1 8494 8494 0.172 0 1 + 27502 19662 18277 18283 27099 27099 0.12705713039690636 LLLRRLLL 8 Unmodified _LLLRRLLL_ 0 0 0 ENST00000497343.5_1_3:160473400-160474084:+|nuORF REV__ENST00000497343.5_1_3:160473400-160474084:+|nuORF REV__ENST00000497343.5_1_3:160473400-160474084:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 505.2667541503906 2 505.365862 1008.71717 0.093308 4.7155E-05 0.10395 5.2534E-05 0.19726 9.9689E-05 505.8677023919898 132.4 0.20139 127.6 127.42 127.62 -4.799 6 5 2 0 0 0 0.89951 1 25487 25487 0.0082765 0 1 1530900 27503 22402 18278 18284 27100 27100 0.2131607264128661 LLLRRPPRC 9 Unmodified _LLLRRPPRC_ 0 0 0 ENST00000474812.1_1_X:51929763-51929980:+|nuORF ENST00000474812.1_1_X:51929763-51929980:+|nuORF ENST00000474812.1_1_X:51929763-51929980:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2138366699219 3 375.23421 1122.6808 NaN NaN NaN NaN NaN NaN NaN 132.36 1 127.5 127 128 -4.8527 0 0 0 0.19623 1 25424 25424 0.073264 0 1 27504 10268 18279 18285 27101 27101 0.12436872472903815 LLLRWLRPI 9 Unmodified _LLLRWLRPI_ 0 0 0 REV__nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 REV__nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2574462890625 2 590.389868 1178.76518 NaN NaN NaN NaN NaN NaN NaN 149.53 1 144.41 143.91 144.91 -5.1204 0 0 0 0.19624 1 28974 28974 0.0033805 0 1 + 27505 15479 18280 18286 27102 27102 0.1829514656133142 LLLSLLEQD 9 Unmodified _LLLSLLEQD_ 0 0 0 REV__nc|ENSG00000151779|A2RRP1-2|NBAS REV__nc|ENSG00000151779|A2RRP1-2|NBAS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2763061523438 2 522.30279 1042.59103 NaN NaN NaN NaN NaN NaN NaN 70.297 1 67.048 66.548 67.548 -3.2492 0 0 0 0.1963 1 13679 13679 0.073264 0 1 + 27506 17084 18281 18287 27103 27103 0.07143476554688277 LLLSLLRLC 9 Unmodified _LLLSLLRLC_ 0 0 0 ENST00000328649.10_1_15:90773507-90773543:-|nuORF ENST00000328649.10_1_15:90773507-90773543:-|nuORF ENST00000328649.10_1_15:90773507-90773543:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.28173828125 2 522.335913 1042.65727 NaN NaN NaN NaN NaN NaN NaN 77.14 1 73.481 72.981 73.981 -3.6588 0 0 0 0.23508 1 14683 14683 2.3027 0 1 27507 8755 18282 18288 27104 27104 0.13765013915735835 LLLSVFQDM 9 Unmodified _LLLSVFQDM_ 0 0 0 RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant;RIC1|p.M978Ifs*8|1|0.04|ENSG00000107036|chr9:5765505-5765506|-/TTGGGAA|frameshift_variant;nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1 RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2749633789062 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 136.46 1 131.56 131.06 132.06 -4.8951 0 0 0 0.22962 1 26224 26224 14.838 0.25658 1 27508 2411 18283 18289 27105 27105 0.02792151511107477 LLLTTFYY 8 Unmodified _LLLTTFYY_ 0 0 0 REV__ZACN|p.I299T|1|0.31|ENSG00000186919|chr17:76081897-76081897|T/C|missense_variant REV__ZACN|p.I299T|1|0.31|ENSG00000186919|chr17:76081897-76081897|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.20361328125 3 345.191671 1032.55318 NaN NaN NaN NaN NaN NaN NaN 86.189 1 82.239 81.739 82.739 -3.9503 0 0 0 0.21486 1 16403 16403 1.8442 0.77278 1 + 27509 25553 18284 18290 27106 27106 0.03821010359843058 LLLTWRFRR 9 Unmodified _LLLTWRFRR_ 0 0 0 ENST00000273062.6_1_2:219270400-219270469:+|nuORF ENST00000273062.6_1_2:219270400-219270469:+|nuORF ENST00000273062.6_1_2:219270400-219270469:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.76806640625 2 630.888024 1259.7615 NaN NaN NaN NaN NaN NaN NaN 132.37 1 127.57 127.07 128.07 -4.799 0 0 0 0.19652 1 25483 25483 1.2148 0 1 27510 8416 18285 18291 27107 27107 0.14200476787436855 LLLVGKLLII 10 Unmodified _LLLVGKLLII_ 0 0 0 L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|182|3|anti-sense L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|182|3|anti-sense L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|182|3|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7855224609375 2 547.899203 1093.78385 0.29695 0.0001627 0.92762 0.00050824 1.2246 0.00067094 547.8996788547271 150.19 0.17715 145.46 145.36 145.54 -4.7323 6 4 2 0 0 0 0.91149 1 29831 29831 0.45834 0 1 1765300 27511 12049 18286 18292 27108 27108 0.24071263412520238 LLLVHEALED 10 Unmodified _LLLVHEALED_ 0 0 0 ENSG00000104213|ENST00000251630|PDGFRL ENSG00000104213|ENST00000251630|PDGFRL ENSG00000104213|ENST00000251630|PDGFRL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32080078125 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 105.68 1 101.42 100.92 101.92 -4.2638 0 0 0 0.22588 1 20801 20801 6.7232 0 1 27512 2222 18287 18293 27109 27109 0.05410263957674033 LLLVLHVLAL 10 Unmodified _LLLVLHVLAL_ 0 0 0 REV__ENSG00000221933|ENST00000641663|OR2A25 REV__ENSG00000221933|ENST00000641663|OR2A25 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 552.3804931640625 2 552.381177 1102.7478 NaN NaN NaN NaN NaN NaN NaN 151.17 1 145.94 145.44 146.44 -5.2365 0 0 0 2.8426 1 29301 29301 0.26539 0 1 + 27513 19711 18288 18294 27110 27110 0.2005380623563724 LLLVLLLLLE 10 Unmodified _LLLVLLLLLE_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2;DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3323974609375 2 576.404318 1150.79408 NaN NaN NaN NaN NaN NaN NaN 164.02 1 159.23 158.73 159.73 -4.7898 0 0 0 2.8426 1 32741 32741 0 0 1 27514 1282 18289 18295 27111 27111 0.22471826347100432 LLLVLLLLLE 10 Unmodified _LLLVLLLLLE_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2;DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3323974609375 2 576.404318 1150.79408 NaN NaN NaN NaN NaN NaN NaN 164.04 1 159.25 158.75 159.75 -4.7898 0 0 0 0.22588 1 32747 32747 0 0 1 27515 1282 18289 18295 27112 27112 0.22471826347100432 LLLVLLLLLE 10 Unmodified _LLLVLLLLLE_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2;DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3244018554688 2 576.404318 1150.79408 NaN NaN NaN NaN NaN NaN NaN 157.32 1 152.05 151.55 152.55 -5.2712 0 0 0 0.22588 1 30516 30516 1.4819 1.0812 1 27516 1282 18289 18295 27113 27113 0.22471826347100432 LLLVLRVL 8 Unmodified _LLLVLRVL_ 0 0 0 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.E2016Rfs*13|1|0.27|ENSG00000053747|chr18:23901164-23901164|G/-|frameshift_variant;LAMA3|p.T89Pfs*69|1|0.2|ENSG00000053747|chr18:23689944-23689944|C/-|frameshift_variant;LAMA3|p.P420Lfs*49|1|0.38|ENSG00000053747|chr18:23773570-23773570|C/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 470.2347106933594 2 469.841688 937.668823 NaN NaN NaN NaN NaN NaN NaN 146.16 1 141.47 140.97 141.97 -4.6868 0 0 0 0.23025 1 28987 28987 3.5871 0 1 27517 1257 18290 18296 27114 27114 0.1974957900137042 LLLVPGPIPF 10 Unmodified _LLLVPGPIPF_ 0 0 0 REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2703247070312 2 533.338978 1064.6634 NaN NaN NaN NaN NaN NaN NaN 119.18 1 114.53 114.03 115.03 -4.645 0 0 0 2.8426 1 22871 22871 1.9275 0.71267 1 + 27518 17754 18291 18297 27115 27115 0.133658554188969 LLLVSIKQREP 11 Unmodified _LLLVSIKQREP_ 0 0 0 ENST00000332624.7_1_2:202244835-202244943:-|nuORF ENST00000332624.7_1_2:202244835-202244943:-|nuORF ENST00000332624.7_1_2:202244835-202244943:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 648.8726806640625 2 648.405912 1294.79727 0.71579 0.00046413 -4.434 -0.002875 -3.7182 -0.0024109 648.4016220394909 164.67 0.28015 159.61 159.41 159.69 -5.0648 9 7 2 0 0 0 0.96145 1 32080 32080 4.5289 3.1993 1 4688900 27519 8786 18292 18298 27116 27116 0.1616646945381035 LLLVVLLAVI 10 Unmodified _LLLVVLLAVI_ 0 0 0 REV__tr|U7SRH1|U7SRH1_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01659PE=4SV=1 REV__tr|U7SRH1|U7SRH1_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01659PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2785034179688 2 533.385929 1064.7573 NaN NaN NaN NaN NaN NaN NaN 67.507 1 64.011 63.511 64.511 -3.4965 0 0 0 2.8426 1 12668 12668 0 0 1 + 27520 25031 18293 18299 27117 27117 0.2275157452120311 LLLVVLWIRW 10 Unmodified _LLLVVLWIRW_ 0 0 0 nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1;IGSF1|p.H803Tfs*4|1|0.66|ENSG00000147255|chrX:131277140-131277140|G/-|frameshift_variant nc|ENSG00000147255|Q8N6C5-2|IGSF1 nc|ENSG00000147255|Q8N6C5-2|IGSF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.53948974609375 3 437.616426 1309.82745 NaN NaN NaN NaN NaN NaN NaN 39.735 1 37.33 36.83 37.83 -2.4049 0 0 0 2.8426 1 7094 7094 0.84494 0.81874 1 27521 4695 18294 18300 27118 27118 0.1849287290965549 LLLWSPHLS 9 Unmodified _LLLWSPHLS_ 0 0 0 REV__ENST00000398073.6_1_12:58216199-58216532:-|nuORF REV__ENST00000398073.6_1_12:58216199-58216532:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2828369140625 2 533.30821 1064.60187 0.10549 5.6261E-05 -0.30495 -0.00016263 -0.19946 -0.00010637 533.30810801093 143.98 1.0301 143.98 143.24 144.27 0 35 29 2 0 0 0 0.41781 1 28806 28806 24.674 0.65332 1 3722000 + 27522 21319 18295 18301 27119 27119 0.07214923719629951 LLLYKCSEC 9 Unmodified _LLLYKCSEC_ 0 0 0 nc|ENSG00000105732|Q6ZN55-2|ZNF574;ENSG00000105732|ENST00000359044|ZNF574;ZNF574|p.S220T|1|0.13|ENSG00000105732|chr19:42079264-42079264|T/A|missense_variant nc|ENSG00000105732|Q6ZN55-2|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5597229003906 3 357.845289 1070.51404 0.50269 0.00017989 -0.48424 -0.00017328 0.018458 6.6053E-06 357.8451521800225 28.449 0.9667 26.493 25.979 26.946 -1.9561 38 27 2 0 0 0 0.87262 1 5012 5012 5.2969 0 1 495960 27523 2338 18296 18302 27120 27120 -0.018397812576722572 LLMDRPTTP 9 Unmodified _LLMDRPTTP_ 0 0 0 REV__ENSG00000133454|ENST00000335473|MYO18B REV__ENSG00000133454|ENST00000335473|MYO18B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2810668945312 2 522.281334 1042.54812 0.28593 0.00014933 -0.086498 -4.5177E-05 0.19943 0.00010416 522.2813136587095 62.833 0.41031 59.576 59.401 59.811 -3.2567 18 11 2 0 0 0 0.5059 1 11771 11771 19.257 4.4187 1 798050 + 27524 16167 18297 18303 27121 27121 0.028543832255763846 LLMMHVSV 8 Unmodified _LLMMHVSV_ 0 0 0 ENST00000340398.4_1_12:31944435-31944465:-|nuORF ENST00000340398.4_1_12:31944435-31944465:-|nuORF ENST00000340398.4_1_12:31944435-31944465:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2497253417969 2 465.250991 928.48743 NaN NaN NaN NaN NaN NaN NaN 71.801 1 68.174 67.674 68.674 -3.6275 0 0 0 0.19492 1 13549 13549 26.341 1.3503 1 27525 8846 18298 18304 27122 27122 0.020325746416688162 LLMRIYELWHT 11 Unmodified _LLMRIYELWHT_ 0 0 0 REV__nc|ENSG00000063601|Q13613-2|MTMR1 REV__nc|ENSG00000063601|Q13613-2|MTMR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 492.2665710449219 3 492.267357 1473.78024 NaN NaN NaN NaN NaN NaN NaN 120.98 1 116.46 115.96 116.96 -4.5221 0 0 0 0.22632 1 23851 23851 0.03141 0 1 + 27526 14161 18299 18305 27123 27123 0.06230225576337034 LLMWAGPWL 9 Unmodified _LLMWAGPWL_ 0 0 0 REV__ENST00000476663.1_1_6:32139072-32143632:-|nuORF REV__ENST00000476663.1_1_6:32139072-32143632:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7933349609375 2 543.793881 1085.57321 NaN NaN NaN NaN NaN NaN NaN 101.47 1 101.47 100.97 101.97 0 0 0 0 0.23048 1 19918 19918 14.582 2.9414 1 + 27527 19523 18300 18306 27124 27124 0.03384482818819379 LLNAHCLD 8 Unmodified _LLNAHCLD_ 0 0 0 UBE3C|p.G761C|1|0.24|ENSG00000009335|chr7:157231127-157231127|G/T|missense_variant UBE3C|p.G761C|1|0.24|ENSG00000009335|chr7:157231127-157231127|G/T|missense_variant UBE3C|p.G761C|1|0.24|ENSG00000009335|chr7:157231127-157231127|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 300.1522521972656 3 300.153222 897.437837 NaN NaN NaN NaN NaN NaN NaN 111.63 1 107.14 106.64 107.64 -4.4915 0 0 0 0.21486 1 21426 21426 1.6526 0 1 27528 26544 18301 18307 27125 27125 -0.014984170427851495 LLNDHIYVV 9 Unmodified _LLNDHIYVV_ 0 0 0 ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.787841796875 2 543.303124 1084.5917 0.33304 0.00018094 0.10041 5.4552E-05 0.43344 0.00023549 543.3031469472272 126.48 0.81723 126.48 126.03 126.85 0 44 22 3 0 0 0 0.022938 2 24951 24899;24951 89.401 45.542 1 6767800 27529 2976 18302 18308 27126;27127 27127 0.05278315994382865 LLNDHIYVV 9 Unmodified _LLNDHIYVV_ 0 0 0 ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7932739257812 2 543.303124 1084.5917 0.20802 0.00011302 -0.28236 -0.0001534 -0.074335 -4.0386E-05 543.3029854550415 130.86 0.67415 126.23 125.9 126.57 -4.6359 47 18 3 0 0 0 0.12612 1 25815 25815 47.594 24.858 1 6339000 27530 2976 18302 18308 27128 27128 0.05278315994382865 LLNDHIYVV 9 Unmodified _LLNDHIYVV_ 0 0 0 ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7848510742188 2 543.303124 1084.5917 0.050009 2.717E-05 0.17852 9.6992E-05 0.22853 0.00012416 543.3031256680775 131.11 0.6924 126.27 125.99 126.69 -4.8355 46 19 3 0 0 0 0.21532 2 25218 25199;25218 36.506 18.36 1 7103300 27531 2976 18302 18308 27129;27130 27130 0.05278315994382865 LLNDHIYVV 9 Unmodified _LLNDHIYVV_ 0 0 0 ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7950439453125 2 543.303124 1084.5917 0.26701 0.00014507 0.039882 2.1668E-05 0.30689 0.00016673 543.3030702127995 131.08 0.73923 126.3 125.94 126.67 -4.7725 50 20 3 0 0 0 0.086396 4 25221 25221;25264;25270;25280 60.074 29.437 1 6433600 27532 2976 18302 18308 27131;27132;27133;27134 27131 0.05278315994382865 LLNEDWEYY 9 Unmodified _LLNEDWEYY_ 0 0 0 nc|ENSG00000007062|O43490-5|PROM1;nc|ENSG00000007062|O43490-3|PROM1;nc|ENSG00000007062|O43490-4|PROM1;nc|ENSG00000007062|O43490-6|PROM1;nc|ENSG00000007062|O43490-7|PROM1;nc|ENSG00000007062|O43490-2|PROM1;ENSG00000007062|ENST00000447510|PROM1 nc|ENSG00000007062|O43490-5|PROM1 nc|ENSG00000007062|O43490-5|PROM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7623901367188 2 622.777136 1243.53972 NaN NaN NaN NaN NaN NaN NaN 120.57 1 120.57 120.07 121.07 0 0 0 0 0.23508 1 23765 23765 9.3474 1.1919 1 27533 1014 18303 18309 27135 27135 -0.07230892210031925 LLNEDWEYY 9 Unmodified _LLNEDWEYY_ 0 0 0 nc|ENSG00000007062|O43490-5|PROM1;nc|ENSG00000007062|O43490-3|PROM1;nc|ENSG00000007062|O43490-4|PROM1;nc|ENSG00000007062|O43490-6|PROM1;nc|ENSG00000007062|O43490-7|PROM1;nc|ENSG00000007062|O43490-2|PROM1;ENSG00000007062|ENST00000447510|PROM1 nc|ENSG00000007062|O43490-5|PROM1 nc|ENSG00000007062|O43490-5|PROM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7631225585938 2 622.777136 1243.53972 NaN NaN NaN NaN NaN NaN NaN 125.83 1 121.23 120.73 121.73 -4.5984 0 0 0 0.23508 1 24806 24806 9.3474 0.60203 1 27534 1014 18303 18309 27136 27136 -0.07230892210031925 LLNEPVSKV 9 Unmodified _LLNEPVSKV_ 0 0 0 REV__nc|ENSG00000106305|Q13155-2|AIMP2 REV__nc|ENSG00000106305|Q13155-2|AIMP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.9988708496094 3 333.534209 997.580796 -0.74557 -0.00024867 1.1689 0.00038988 0.42335 0.0001412 333.86895558534053 51.558 0.58924 48.507 48.206 48.795 -3.0517 23 16 2 0 0 0 0.88284 1 9445 9445 0.96228 0 1 996520 + 27535 15040 18304 18310 27137 27137 0.08190913620092033 LLNEVSQKY 9 Unmodified _LLNEVSQKY_ 0 0 0 REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7672729492188 2 547.298039 1092.58152 0.11581 6.338E-05 -2.2463 -0.0012294 -2.1305 -0.001166 547.2966518420885 76.39 0.47549 72.667 72.346 72.821 -3.7227 20 13 2 0 0 0 0.42289 1 14447 14447 39.957 0.0076237 1 1486800 + 27536 13708 18305 18311 27138 27138 0.0389370826915183 LLNGNATSKAP 11 Unmodified _LLNGNATSKAP_ 0 0 0 REV__nc|ENSG00000272391|A8CG34|POM121C REV__nc|ENSG00000272391|A8CG34|POM121C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79443359375 2 543.301113 1084.58767 0.4133 0.00022454 -0.097915 -5.3197E-05 0.31538 0.00017135 543.3012783609097 67.958 1.0423 64.631 64.239 65.282 -3.3268 59 29 3 0 0 0 0.57511 1 12753 12753 19.362 19.362 1 4359900 + 27537 24304 18306 18312 27139 27139 0.04876226500641678 LLNIAKPTLLP 11 Unmodified _LLNIAKPTLLP_ 0 0 0 REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3 REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 596.8873291015625 2 596.886824 1191.7591 NaN NaN NaN NaN NaN NaN NaN 174.94 1 174.94 174.44 175.44 0 0 0 0 0.22632 1 36234 36234 0.11104 0 1 + 27538 19445 18307 18313 27140 27140 0.1708858353913456 LLNILSGLSVP 11 Unmodified _LLNILSGLSVP_ 0 0 0 nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9;ABCA9|p.P1249Qfs*18|1|0.17|ENSG00000154258|chr17:68990930-68990930|A/-|frameshift_variant;ABCA9|p.L1080*|1|0.43|ENSG00000154258|chr17:69008144-69008144|A/-|frameshift_variant;ABCA9|p.F1166Lfs*5|1|0.33|ENSG00000154258|chr17:68995952-68995952|A/-|frameshift_variant;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8;ENST00000541225.5_1_17:66883094-66937097:-|nuORF;ABCA8|p.L1128*|1|0.37|ENSG00000141338|chr17:68885242-68885242|A/-|frameshift_variant nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000141338|O94911-1|ABCA8 nc|ENSG00000154258|Q8IUA7-4|ABCA9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 563.243408203125 2 563.347532 1124.68051 NaN NaN NaN NaN NaN NaN NaN 167.2 1 162.41 161.91 162.91 -4.7898 0 0 0 0.22548 1 33693 33693 0.2986 0.03321 1 27539 5003;4355 18308 18314 27141 27141 0.12315731234025407 LLNIYCLVA 9 Unmodified _LLNIYCLVA_ 0 0 0 REV__nc|ENSG00000169682|Q9H2V7-5|SPNS1 REV__nc|ENSG00000169682|Q9H2V7-5|SPNS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 341.21917724609375 3 341.196539 1020.56779 NaN NaN NaN NaN NaN NaN NaN 103.09 1 98.772 98.272 99.272 -4.3208 0 0 0 0.23508 1 19742 19742 1.1933 0 1 + 27540 18114 18309 18315 27142 27142 0.05832759236329821 LLNNLGET 8 Unmodified _LLNNLGET_ 0 0 0 ENST00000537553.5_1_12:30862838-30863444:-|nuORF;ENST00000433722.6_1_12:30862838-30864693:-|nuORF;nc|ENSG00000110888|Q6IMN6-4|CAPRIN2;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;nc|ENSG00000110888|Q6IMN6|CAPRIN2 ENST00000537553.5_1_12:30862838-30863444:-|nuORF ENST00000537553.5_1_12:30862838-30863444:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2359313964844 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 64.785 1 64.785 64.285 65.285 0 0 0 0 0.21486 1 12474 12474 9.3474 0.75416 1 27541 2597 18310 18316 27143 27143 0.019015056264720442 LLNNVSDV 8 Unmodified _LLNNVSDV_ 0 0 0 REV__tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1 REV__tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2168273925781 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 70.648 1 70.648 70.148 71.148 0 0 0 0 0.21486 1 13683 13683 10.183 0 1 + 27542 24886 18311 18317 27144 27144 0.019015056264720442 LLNPNRQTIYF 11 Unmodified _LLNPNRQTIYF_ 0 0 0 nc|ENSG00000182985|Q9BY67-2|CADM1;ENST00000537140.5_1_11:115040311-115375169:-|nuORF;nc|ENSG00000182985|Q9BY67-5|CADM1;nc|ENSG00000182985|Q9BY67|CADM1;nc|ENSG00000182985|Q9BY67-4|CADM1;ENSG00000182985|ENST00000331581|CADM1 nc|ENSG00000182985|Q9BY67-2|CADM1 nc|ENSG00000182985|Q9BY67-2|CADM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2312316894531 3 460.254105 1377.74048 0.31301 0.00014406 -0.18236 -8.3931E-05 0.13065 6.0134E-05 460.25399586630243 117.09 0.7581 112.51 112.26 113.02 -4.5815 53 21 4 0 0 0 0.80429 1 22564 22564 3.0723 0 1 2966400 27543 6823 18312 18318 27145 27145 0.06672421897292224 LLNSATTSL 9 Unmodified _LLNSATTSL_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2340393066406 2 460.258382 918.502212 0.99811 0.00045939 -1.1132 -0.00051237 -0.11511 -5.298E-05 460.2576904402727 26.472 0.54357 24.69 24.483 25.026 -1.7821 31 15 3 0 0 0 0.31673 1 4680 4680 39.95 13.682 1 1115100 27544 437 18313 18319 27146 27146 0.03970061314987561 LLNSLKQLLT 10 Unmodified _LLNSLKQLLT_ 0 0 0 REV__ENSG00000277481|ENST00000620267|PKD1L3 REV__ENSG00000277481|ENST00000620267|PKD1L3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21905517578125 3 381.576296 1141.70706 -0.032619 -1.2447E-05 0.28145 0.00010739 0.24883 9.4946E-05 381.5763308956821 32.204 0.39088 29.973 29.833 30.224 -2.2305 18 10 3 0 0 0 0.85675 1 5870 5870 14.957 0 1 760800 + 27545 19943 18314 18320 27147 27147 0.14187420125358585 LLNTWDPKV 9 Unmodified _LLNTWDPKV_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7701416015625 2 543.303124 1084.5917 0.33304 0.00018094 0.10041 5.4552E-05 0.43344 0.00023549 543.3031469472272 126.48 0.81723 126.48 126.03 126.85 0 44 22 3 0 0 0 0.48707 1 25009 25009 20.415 2.0414 1 6767800 27546 6679 18315 18321 27148 27148 0.05278315994382865 LLPALVAVD 9 Unmodified _LLPALVAVD_ 0 0 0 REV__ENSG00000175040|ENST00000309575|CHST2 REV__ENSG00000175040|ENST00000309575|CHST2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.1917724609375 3 304.191783 909.553519 NaN NaN NaN NaN NaN NaN NaN 91.779 1 87.853 87.353 88.353 -3.9251 0 0 0 0.23508 1 17968 17968 2.4985 0.84587 1 + 27547 18446 18316 18322 27149 27149 0.09512430079689693 LLPATRLFR 9 Unmodified _LLPATRLFR_ 0 0 0 ENSG00000013523|ENST00000251089|ANGEL1;ANGEL1|p.Q40Rfs*2|2|0.32|ENSG00000013523|chr14:76809590-76809590|G/-|frameshift_variant;ENST00000556298.1_1_14:77276562-77279203:-|nuORF ENSG00000013523|ENST00000251089|ANGEL1 ENSG00000013523|ENST00000251089|ANGEL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79296875 2 543.842751 1085.67095 NaN NaN NaN NaN NaN NaN NaN 136.81 1 131.97 131.47 132.47 -4.8365 0 0 0 0.23508 1 26349 26349 7.2892 0.56607 1 27548 1101 18317 18323 27150 27150 0.13154007739171902 LLPCDPCL 8 Unmodified _LLPCDPCL_ 0 0 0 REV__CON__P12763 REV__CON__P12763 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2149353027344 2 437.214075 872.413596 NaN NaN NaN NaN NaN NaN NaN 132.03 1 132.03 131.53 132.53 0 0 0 0 0.21486 1 26097 26097 11.114 0.93107 1 + + 27549 13526 18318 18324 27151 27151 -0.027713935206861606 LLPDIKLLL 9 Unmodified _LLPDIKLLL_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 520.3543701171875 2 519.352086 1036.68962 0.21898 0.00011373 -0.026061 -1.3535E-05 0.19292 0.00010019 519.3520325795547 170.95 0.30772 170.95 170.76 171.06 0 21 8 4 0 0 0 0.069179 1 35180 35180 22.621 0.87031 1 101760000 + 27550 18092 18319 18325 27152 27152 0.1727412459038078 LLPEGPPAI 9 Unmodified _LLPEGPPAI_ 0 0 0 nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1 nc|ENSG00000051108|Q15011-3|HERPUD1 nc|ENSG00000051108|Q15011-3|HERPUD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7684020996094 2 453.768386 905.522219 0.25137 0.00011406 -0.11806 -5.3574E-05 0.13331 6.049E-05 453.7682655846248 131.92 1.457 131.92 131.22 132.68 0 119 41 4 0 0 0 0.00015015 6 26010 25970;26010;26054;26103;26151;26195 123.1 52.381 1 28969000 27551 1245 18320 18326 27153;27154;27155;27156;27157;27158 27154 0.06567857045604342 LLPEGPPAI 9 Unmodified _LLPEGPPAI_ 0 0 0 nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1 nc|ENSG00000051108|Q15011-3|HERPUD1 nc|ENSG00000051108|Q15011-3|HERPUD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7686767578125 2 453.768386 905.522219 0.25052 0.00011368 0.17134 7.7748E-05 0.42186 0.00019143 453.76839244525075 132.74 0.11041 132.74 132.68 132.79 0 4 2 2 0 0 0 0.14832 1 26257 26257 44.407 14.182 1 1366200 27552 1245 18320 18326 27159 27159 0.06567857045604342 LLPEGPPAI 9 Unmodified _LLPEGPPAI_ 0 0 0 nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1 nc|ENSG00000051108|Q15011-3|HERPUD1 nc|ENSG00000051108|Q15011-3|HERPUD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7684631347656 2 453.768386 905.522219 -0.08909 -4.0426E-05 0.097329 4.4165E-05 0.0082392 3.7387E-06 453.7683395779325 136.76 1.6558 132.12 131.32 132.98 -4.6399 148 46 4 0 0 0 0.00015015 8 26902 26857;26902;26945;26998;27056;27108;27136;27157 123.1 52.381 1 31056000 27553 1245 18320 18326 27160;27161;27162;27163;27164;27165;27166;27167 27161 0.06567857045604342 LLPEGPPAI 9 Unmodified _LLPEGPPAI_ 0 0 0 nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1 nc|ENSG00000051108|Q15011-3|HERPUD1 nc|ENSG00000051108|Q15011-3|HERPUD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76837158203125 2 453.768386 905.522219 0.01343 6.094E-06 -0.020361 -9.2392E-06 -0.0069315 -3.1453E-06 453.76831745606063 137.04 1.7612 132.12 131.28 133.04 -4.9216 125 49 3 0 0 0 1.3828E-05 7 26402 26207;26251;26304;26349;26402;26447;26500 137.59 55.721 1 24536000 27554 1245 18320 18326 27168;27169;27170;27171;27172;27173;27174 27172 0.06567857045604342 LLPEGPPAI 9 Unmodified _LLPEGPPAI_ 0 0 0 nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1 nc|ENSG00000051108|Q15011-3|HERPUD1 nc|ENSG00000051108|Q15011-3|HERPUD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7685241699219 2 453.768386 905.522219 0.19451 8.8261E-05 -0.11162 -5.0651E-05 0.082884 3.761E-05 453.76825189671297 136.87 1.6145 132.03 131.4 133.02 -4.84 142 45 4 0 0 0 0.00015015 9 26306 26256;26306;26321;26348;26402;26448;26489;26538;26557 123.1 52.381 1 24347000 27555 1245 18320 18326 27175;27176;27177;27178;27179;27180;27181;27182;27183 27176 0.06567857045604342 LLPELPQP 8 Unmodified _LLPELPQP_ 0 0 0 ENST00000455810.5_1_10:6624113-6625881:+|nuORF ENST00000455810.5_1_10:6624113-6625881:+|nuORF ENST00000455810.5_1_10:6624113-6625881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7682189941406 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 139.96 1 135.12 134.62 135.62 -4.8492 0 0 0 0.21486 1 26989 26989 10.183 0 1 27556 10022 18321 18327 27184 27184 0.06567857045604342 LLPEQTLFNW 10 Unmodified _LLPEQTLFNW_ 0 0 0 REV__ENST00000215781.2_2_22:30658982-30659216:-|nuORF REV__ENST00000215781.2_2_22:30658982-30659216:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7611083984375 2 630.834788 1259.65502 NaN NaN NaN NaN NaN NaN NaN 132.42 1 127.63 127.13 128.13 -4.799 0 0 0 2.8426 1 25492 25492 0.043787 0.017581 1 + 27557 19997 18322 18328 27185 27185 0.03558256711630747 LLPFHRDPA 9 Unmodified _LLPFHRDPA_ 0 0 0 COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant;ENSG00000196739|ENST00000356083|COL27A1;COL27A1|p.E1076Sfs*7|1|0.43|ENSG00000196739|chr9:114264382-114264382|G/-|frameshift_variant;COL27A1|p.P816Lfs*10|1|0.52|ENSG00000196739|chr9:114222243-114222243|C/-|frameshift_variant;COL27A1|p.E848Sfs*4|1|0.46|ENSG00000196739|chr9:114231839-114231839|G/-|frameshift_variant;COL27A1|p.P918Lfs*9|1|0.21|ENSG00000196739|chr9:114240240-114240240|C/-|frameshift_variant;nc|ENSG00000196739|Q8IZC6-3|COL27A1;COL27A1|p.A351Cfs*101|1|0.1|ENSG00000196739|chr9:114168601-114168602|-/C|frameshift_variant;COL27A1|p.K452Nfs*6|1|0.23|ENSG00000196739|chr9:114168906-114168906|A/-|frameshift_variant COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2633666992188 2 533.295633 1064.57671 NaN NaN NaN NaN NaN NaN NaN 149.34 1 144.22 143.72 144.72 -5.1204 0 0 0 0.23508 1 28937 28937 12.532 0.89125 1 27558 625 18323 18329 27186 27186 0.04700868917052503 LLPFRIRHK 9 Unmodified _LLPFRIRHK_ 0 0 0 nc|ENSG00000055118|Q12809-6|KCNH2;ENST00000461280.1_1_7:150646989-150652738:-|nuORF;nc|ENSG00000055118|Q12809-5|KCNH2;ENST00000473610.5_1_7:150646989-150648224:-|nuORF nc|ENSG00000055118|Q12809-6|KCNH2 nc|ENSG00000055118|Q12809-6|KCNH2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2754516601562 2 590.377292 1178.74003 NaN NaN NaN NaN NaN NaN NaN 77.44 1 73.782 73.282 74.282 -3.6588 0 0 0 0.23508 1 14744 14744 4.756 0.42677 1 27559 10068 18324 18330 27187 27187 0.15781091758753973 LLPFVQKAP 9 Unmodified _LLPFVQKAP_ 0 0 0 nc|ENSG00000115525|Q9UNP4-2|ST3GAL5;nc|ENSG00000115525|Q9UNP4-3|ST3GAL5;ENSG00000115525|ENST00000638572|ST3GAL5 nc|ENSG00000115525|Q9UNP4-2|ST3GAL5 nc|ENSG00000115525|Q9UNP4-2|ST3GAL5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.2588806152344 2 506.813128 1011.6117 0.10087 5.1122E-05 2.9399 0.00149 3.0408 0.0015411 506.81437077426085 124.01 0.42545 119.44 119.17 119.59 -4.5757 19 11 2 0 0 0 0.51974 1 24470 24470 4.7159 3.5011 1 1111900 27560 2863 18325 18331 27188 27188 0.1063611172498895 LLPFVQKAP 9 Unmodified _LLPFVQKAP_ 0 0 0 nc|ENSG00000115525|Q9UNP4-2|ST3GAL5;nc|ENSG00000115525|Q9UNP4-3|ST3GAL5;ENSG00000115525|ENST00000638572|ST3GAL5 nc|ENSG00000115525|Q9UNP4-2|ST3GAL5 nc|ENSG00000115525|Q9UNP4-2|ST3GAL5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 506.813128 1011.6117 0.16997 8.6144E-05 3.4015 0.0017239 3.5715 0.0018101 506.8151691194333 124.02 0.44101 119.43 119.33 119.77 -4.5926 -0.0047222 0.00027422 NaN 4.7159 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1162100 27561 2863 18325 18331 0.1063611172498895 LLPGAPHG 8 Unmodified _LLPGAPHG_ 0 0 0 REV__nc|ENSG00000142513|Q9BZG2-3|ACP4 REV__nc|ENSG00000142513|Q9BZG2-3|ACP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21942138671875 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 30.094 1 30.094 29.594 30.594 0 0 0 0 0.23711 1 5401 5401 0.12286 0 1 + 27562 16673 18326 18332 27189 27189 0.033378788713775975 LLPGWREPG 9 Unmodified _LLPGWREPG_ 0 0 0 REV__IFNLR1|p.C150Afs*7|1|0.18|ENSG00000185436|chr1:24161605-24161605|G/-|frameshift_variant REV__IFNLR1|p.C150Afs*7|1|0.18|ENSG00000185436|chr1:24161605-24161605|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.18975830078125 3 342.190665 1023.55016 NaN NaN NaN NaN NaN NaN NaN 42.349 1 42.349 41.849 42.849 0 0 0 0 0.23508 1 7921 7921 2.9952 1.151 1 + 27563 18968 18327 18333 27190 27190 0.039331800256945826 LLPLIRVLLGP 11 Unmodified _LLPLIRVLLGP_ 0 0 0 REV__GLB1|p.F4L|1|0.28|ENSG00000170266|chr3:33097076-33097076|A/G|missense_variant REV__GLB1|p.F4L|1|0.28|ENSG00000170266|chr3:33097076-33097076|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2808837890625 2 602.413009 1202.81146 NaN NaN NaN NaN NaN NaN NaN 95.084 1 95.084 94.584 95.584 0 0 0 0 0.23594 1 18623 18623 3.5965 1.7523 1 + 27564 23576 18328 18334 27191 27191 0.21817166672735766 LLPLLLKVH 9 Unmodified _LLPLLLKVH_ 0 0 0 ENST00000374369.7_1_20:34025707-34025902:-|nuORF ENST00000374369.7_1_20:34025707-34025902:-|nuORF ENST00000374369.7_1_20:34025707-34025902:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6915283203125 2 523.360245 1044.70594 0.18285 9.5695E-05 -3.2 -0.0016747 -3.0171 -0.001579 523.8603660472007 122.13 0.10191 122.13 122.06 122.17 0 4 2 2 0 0 0 0.88237 1 24072 24072 0.6015 0 1 485630 27565 9216 18329 18335 27192 27192 0.18537250547115036 LLPLRALPLLF 11 Unmodified _LLPLRALPLLF_ 0 0 0 ENSG00000160703|ENST00000409109|NLRX1;NLRX1|p.L630Ffs*10|1|0.49|ENSG00000160703|chr11:119179902-119179902|G/-|frameshift_variant;ENST00000481860.6_1_11:119043673-119051967:+|nuORF;NLRX1|p.G888Vfs*13|1|0.4|ENSG00000160703|chr11:119183169-119183169|G/-|frameshift_variant;nc|ENSG00000160703|Q86UT6-2|NLRX1 ENSG00000160703|ENST00000409109|NLRX1 ENSG00000160703|ENST00000409109|NLRX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.2218933105469 4 317.214055 1264.82712 -0.28603 -9.0734E-05 1.5019 0.00047641 1.2158 0.00038567 317.2152707117613 83.07 1.0953 79.462 78.775 79.87 -3.6079 49 30 2 0 0 0 0.96227 1 16234 16234 0 0 1 859670 27566 5263 18330 18336 27193 27193 0.20529453189760716 LLPPDLQAKV 10 Unmodified _LLPPDLQAKV_ 0 0 0 REV__BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant REV__BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7721557617188 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 27.316 1 25.534 25.034 26.034 -1.7821 0 0 0 0.14075 1 4849 4849 38.176 2.0485 1 + 27567 13203 18331 18337 27194 27194 0.11167462062553568 LLPPDQAFSDT 11 Unmodified _LLPPDQAFSDT_ 0 0 0 ENST00000511884.6_2_4:31144591-31144774:+|nuORF ENST00000511884.6_2_4:31144591-31144774:+|nuORF ENST00000511884.6_2_4:31144591-31144774:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2990112304688 2 602.298236 1202.58192 NaN NaN NaN NaN NaN NaN NaN 151.11 1 145.94 145.44 146.44 -5.1759 0 0 0 0.23324 1 29293 29293 5.7319 0 1 27568 10751 18332 18338 27195 27195 -0.011269168016724507 LLPPFLRRRSW 11 Unmodified _LLPPFLRRRSW_ 0 0 0 ENST00000508453.1_1_4:108852799-108857674:+|nuORF;nc|ENSG00000155016|Q7Z449-2|CYP2U1;ENST00000513302.1_1_4:108852745-108856764:+|nuORF;CYP2U1|p.K292Rfs*3|1|0.45|ENSG00000155016|chr4:107945351-107945351|A/-|frameshift_variant;CYP2U1|p.F337Lfs*34|1|0.44|ENSG00000155016|chr4:107945487-107945487|T/-|frameshift_variant;ENSG00000155016|ENST00000332884|CYP2U1 ENST00000508453.1_1_4:108852799-108857674:+|nuORF ENST00000508453.1_1_4:108852799-108857674:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 720.9353637695312 2 720.932963 1439.85137 NaN NaN NaN NaN NaN NaN NaN 168.06 1 163.17 162.67 163.67 -4.8916 0 0 0 0.2367 1 33109 33109 2.9952 1.6657 1 27569 770 18333 18339 27196 27196 0.1490410639601123 LLPPLLTGR 9 Unmodified _LLPPLLTGR_ 0 0 0 REV__ABCC10|p.Q583Rfs*41|1|0.34|ENSG00000124574|chr6:43435885-43435885|C/-|frameshift_variant REV__ABCC10|p.Q583Rfs*41|1|0.34|ENSG00000124574|chr6:43435885-43435885|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2708740234375 2 490.318577 978.622602 NaN NaN NaN NaN NaN NaN NaN 146.07 1 140.96 140.46 141.46 -5.1108 0 0 0 0.19652 1 28245 28245 0.073264 0 1 + 27570 12898 18334 18340 27197 27197 0.13243514099281128 LLPPMAHR 8 Unmodified _LLPPMAHR_ 0 0 0 REV__ENST00000376741.4_1_17:46005558-46005804:+|nuORF REV__ENST00000376741.4_1_17:46005558-46005804:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.165771484375 3 312.181224 933.521842 NaN NaN NaN NaN NaN NaN NaN 67.906 1 67.906 67.406 68.406 0 0 0 0 0.21486 1 13128 13128 0.40072 0 1 + 27571 21081 18335 18341 27198 27198 0.052421588447714385 LLPPPPCPA 9 Unmodified _LLPPPPCPA_ 0 0 0 nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;FUCA2|p.I367Mfs*27|1|0.31|ENSG00000001036|chr6:143501982-143501985|ATAA/-|frameshift_variant;ENSG00000001036|ENST00000002165|FUCA2;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4 nc|ENSG00000001036|Q9BTY2-2|FUCA2 nc|ENSG00000001036|Q9BTY2-2|FUCA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.754638671875 2 452.751682 903.48881 0.40332 0.00018261 -0.3299 -0.00014936 0.073427 3.3244E-05 452.7515182103747 107.54 3.7486 107.54 106.86 110.61 0 187 107 3 0 0 0 0.099227 5 21130 21126;21130;21175;21221;21226 56.048 27.875 1 9350200 27572 952 18336 18342 27199;27200;27201;27202;27203 27200 0.03320532002044274 LLPPPPCPA 9 Unmodified _LLPPPPCPA_ 0 0 0 nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;FUCA2|p.I367Mfs*27|1|0.31|ENSG00000001036|chr6:143501982-143501985|ATAA/-|frameshift_variant;ENSG00000001036|ENST00000002165|FUCA2;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4 nc|ENSG00000001036|Q9BTY2-2|FUCA2 nc|ENSG00000001036|Q9BTY2-2|FUCA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7487487792969 2 452.751682 903.48881 -0.30552 -0.00013833 0.38623 0.00017486 0.080702 3.6538E-05 452.75178524626006 112.15 4.1373 107.73 107.13 111.27 -4.4231 206 117 3 0 0 0 0.03148 6 22133 22058;22061;22110;22133;22155;22159 79.935 51.761 1 13853000 27573 952 18336 18342 27204;27205;27206;27207;27208;27209 27207 0.03320532002044274 LLPPPPCPA 9 Unmodified _LLPPPPCPA_ 0 0 0 nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;FUCA2|p.I367Mfs*27|1|0.31|ENSG00000001036|chr6:143501982-143501985|ATAA/-|frameshift_variant;ENSG00000001036|ENST00000002165|FUCA2;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4 nc|ENSG00000001036|Q9BTY2-2|FUCA2 nc|ENSG00000001036|Q9BTY2-2|FUCA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7544860839844 2 452.751682 903.48881 -0.040949 -1.854E-05 0.17734 8.0291E-05 0.13639 6.1751E-05 452.75169690341903 112.29 3.5492 107.77 107.2 110.75 -4.5259 181 100 3 0 0 0 0.19234 4 21553 21508;21553;21591;21635 36.466 19.38 1 8490100 27574 952 18336 18342 27210;27211;27212;27213 27211 0.03320532002044274 LLPPPPCPA 9 Unmodified _LLPPPPCPA_ 0 0 0 nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;FUCA2|p.I367Mfs*27|1|0.31|ENSG00000001036|chr6:143501982-143501985|ATAA/-|frameshift_variant;ENSG00000001036|ENST00000002165|FUCA2;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4 nc|ENSG00000001036|Q9BTY2-2|FUCA2 nc|ENSG00000001036|Q9BTY2-2|FUCA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75457763671875 2 452.751682 903.48881 0.5372 0.00024322 -0.42687 -0.00019326 0.11033 4.9952E-05 452.7514214839815 111.9 4.5468 107.67 107.08 111.62 -4.2289 220 129 3 0 0 0 0.13897 3 21502 21502;21549;21596 45.75 28.663 1 11186000 27575 952 18336 18342 27214;27215;27216 27214 0.03320532002044274 LLPPPPCPA 9 Carbamidomethyl (C) _LLPPPPC(Carbamidomethyl (C))PA_ LLPPPPC(1)PA LLPPPPC(46)PA 0 1 0 nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;FUCA2|p.I367Mfs*27|1|0.31|ENSG00000001036|chr6:143501982-143501985|ATAA/-|frameshift_variant;ENSG00000001036|ENST00000002165|FUCA2;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4 nc|ENSG00000001036|Q9BTY2-2|FUCA2 nc|ENSG00000001036|Q9BTY2-2|FUCA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2319030761719 2 481.262413 960.510274 0.23082 0.00011109 0.31887 0.00015346 0.54969 0.00026455 481.26239548082344 94.176 0.76202 90.033 89.55 90.312 -4.1435 45 21 3 0 0 0 0.13897 1 17990 17990 45.75 24.879 1 1518300 27576 952 18336 18343 27217 27217 1 0.028439170307706263 LLPPQAPAL 9 Unmodified _LLPPQAPAL_ 0 0 0 ENST00000441896.1_1_7:57059615-57063740:+|nuORF ENST00000441896.1_1_7:57059615-57063740:+|nuORF ENST00000441896.1_1_7:57059615-57063740:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2332458496094 2 460.284203 918.553853 -0.037494 -1.7258E-05 0.289 0.00013302 0.2515 0.00011576 460.2842415684515 115.93 2.3519 111.45 110.21 112.56 -4.486 141 67 3 0 0 0 0.32599 1 22754 22754 44.407 3.9584 1 3239300 27577 9894 18337 18344 27218 27218 0.09131849799553038 LLPPQAPAL 9 Unmodified _LLPPQAPAL_ 0 0 0 ENST00000441896.1_1_7:57059615-57063740:+|nuORF ENST00000441896.1_1_7:57059615-57063740:+|nuORF ENST00000441896.1_1_7:57059615-57063740:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2342224121094 2 460.284203 918.553853 0.22826 0.00010506 -0.038115 -1.7544E-05 0.19014 8.752E-05 460.28410210579335 116.18 2.2734 111.6 110.34 112.61 -4.5815 138 64 3 0 0 0 0.43406 1 22111 22111 38.151 13.477 1 3269600 27578 9894 18337 18344 27219 27219 0.09131849799553038 LLPPTLMATS 10 Unmodified _LLPPTLMATS_ 0 0 0 PHACTR1|p.A49T|1|0.22|ENSG00000112137|chr6:12749685-12749685|G/A|missense_variant PHACTR1|p.A49T|1|0.22|ENSG00000112137|chr6:12749685-12749685|G/A|missense_variant PHACTR1|p.A49T|1|0.22|ENSG00000112137|chr6:12749685-12749685|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2653198242188 2 522.293911 1042.57327 NaN NaN NaN NaN NaN NaN NaN 118.66 1 114.05 113.55 114.55 -4.6106 0 0 0 2.8426 1 22771 22771 0.20733 0.084463 1 27579 12779 18338 18345 27220 27220 0.053684380281538324 LLPQFGMV 8 Unmodified _LLPQFGMV_ 0 0 0 ART3|p.L377Ffs*18|1|0.17|ENSG00000156219|chr4:76112479-76112480|-/TTATGTC|frameshift_variant;ENST00000510863.1_1_4:77028861-77033669:+|nuORF;nc|ENSG00000156219|Q13508-2|ART3;nc|ENSG00000156219|Q13508-3|ART3;ENSG00000156219|ENST00000355810|ART3 ART3|p.L377Ffs*18|1|0.17|ENSG00000156219|chr4:76112479-76112480|-/TTATGTC|frameshift_variant ART3|p.L377Ffs*18|1|0.17|ENSG00000156219|chr4:76112479-76112480|-/TTATGTC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7544250488281 2 452.751682 903.48881 -0.040949 -1.854E-05 0.17734 8.0291E-05 0.13639 6.1751E-05 452.75169690341903 112.29 3.5492 107.77 107.2 110.75 -4.5259 181 100 3 0 0 0 8448 1 21504 21504 9.544 4.8281 1 8490100 27580 224 18339 18346 27221 27221 0.033205320020670115 LLPRKTILQ 9 Unmodified _LLPRKTILQ_ 0 0 0 ENST00000253023.7_1_19:59070165-59070261:-|nuORF ENST00000253023.7_1_19:59070165-59070261:-|nuORF ENST00000253023.7_1_19:59070165-59070261:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2733764648438 2 541.358234 1080.70191 NaN NaN NaN NaN NaN NaN NaN 157.64 1 152.35 151.85 152.85 -5.2854 0 0 0 0.23508 1 30593 30593 4.756 0 1 27581 8230 18340 18347 27222 27222 0.16479161053416647 LLPTPLPM 8 Unmodified _LLPTPLPM_ 0 0 0 L1MD2_dup2312|chr3:169838249-169838855:-|1.025247598227015|0.1719973841498203|2.58|473.0|27|1|anti-sense L1MD2_dup2312|chr3:169838249-169838855:-|1.025247598227015|0.1719973841498203|2.58|473.0|27|1|anti-sense L1MD2_dup2312|chr3:169838249-169838855:-|1.025247598227015|0.1719973841498203|2.58|473.0|27|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 441.108154296875 2 441.261882 880.509211 NaN NaN NaN NaN NaN NaN NaN 120.14 1 115.49 114.99 115.99 -4.645 0 0 0 0.21486 1 23059 23059 2.8892 0 1 27582 12029 18341 18348 27223 27223 0.06417702661872227 LLPTSWAM 8 Unmodified _LLPTSWAM_ 0 0 0 ENST00000491554.6_1_15:40705265-40707132:+|nuORF ENST00000491554.6_1_15:40705265-40707132:+|nuORF ENST00000491554.6_1_15:40705265-40707132:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2430114746094 2 459.741314 917.468075 -0.022191 -1.0202E-05 0.36103 0.00016598 0.33884 0.00015578 459.741429740106 84.22 2.3722 80.508 79.816 82.188 -3.7117 142 67 3 0 0 0 0.49844 2 16108 16091;16108 28.173 1.832 1 4900000 27583 10528 18342 18349 27224;27225 27225 0.0060394162238708304 LLPVHLVEA 9 Unmodified _LLPVHLVEA_ 0 0 0 REV__SCFD2|p.F154L|1|0.37|ENSG00000184178|chr4:53365480-53365480|G/T|missense_variant REV__SCFD2|p.F154L|1|0.37|ENSG00000184178|chr4:53365480-53365480|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 495.8048095703125 2 495.80276 989.590967 NaN NaN NaN NaN NaN NaN NaN 164.58 1 159.79 159.29 160.29 -4.7898 0 0 0 0.19684 1 32899 32899 0.073264 0 1 + 27584 24593 18343 18350 27226 27226 0.095755213453117 LLPVVLPLLLL 11 Unmodified _LLPVVLPLLLL_ 0 0 0 nc|ENSG00000113273|P15848-2|ARSB;ENSG00000113273|ENST00000264914|ARSB nc|ENSG00000113273|P15848-2|ARSB nc|ENSG00000113273|P15848-2|ARSB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2947387695312 2 601.927961 1201.84137 NaN NaN NaN NaN NaN NaN NaN 79.62 1 79.62 79.12 80.12 0 0 0 0 0.23698 1 15494 15494 0.35063 0 1 27585 2734 18344 18351 27227 27227 0.2485210561810618 LLPYYDVP 8 Unmodified _LLPYYDVP_ 0 0 0 REV__ENSG00000187323|ENST00000442544|DCC REV__ENSG00000187323|ENST00000442544|DCC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.257568359375 2 490.260394 978.506234 NaN NaN NaN NaN NaN NaN NaN 46.06 1 43.219 42.719 43.719 -2.8409 0 0 0 0.20568 1 8689 8689 20.871 3.7583 1 + 27586 19085 18345 18352 27228 27228 0.01612150808705337 LLQDLRVSPY 10 Unmodified _LLQDLRVSPY_ 0 0 0 ENST00000598553.1_1_19:50482353-50484290:-|nuORF;nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3 ENST00000598553.1_1_19:50482353-50484290:-|nuORF ENST00000598553.1_1_19:50482353-50484290:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.288330078125 2 602.340238 1202.66592 NaN NaN NaN NaN NaN NaN NaN 78.75 1 74.945 74.445 75.445 -3.8048 0 0 0 0.22588 1 14936 14936 7.9102 1.7044 1 27587 2276 18346 18353 27229 27229 0.07269659085909552 LLQDNDENRK 10 Unmodified _LLQDNDENRK_ 0 0 0 ENST00000373465.2_1_X:46278605-46278842:-|nuORF ENST00000373465.2_1_X:46278605-46278842:-|nuORF ENST00000373465.2_1_X:46278605-46278842:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7754516601562 2 622.815116 1243.61568 NaN NaN NaN NaN NaN NaN NaN 130.2 1 125.36 124.86 125.86 -4.8355 0 0 0 0.22588 1 24996 24996 7.609 0 1 27588 9199 18347 18354 27230 27230 0.0036150469006770436 LLQELVKH 8 Unmodified _LLQELVKH_ 0 0 0 nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1;VAV1|p.T347M|1|0.37|ENSG00000141968|chr19:6828435-6828435|C/T|missense_variant;nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3 nc|ENSG00000141968|P15498-2|VAV1 nc|ENSG00000141968|P15498-2|VAV1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2698059082031 2 490.300384 978.586216 NaN NaN NaN NaN NaN NaN NaN 138.98 1 134.03 133.53 134.53 -4.952 0 0 0 0.21486 1 26733 26733 12.532 0 1 27589 4402 18348 18355 27231 27231 0.09606637202557522 LLQEVPGYF 9 Unmodified _LLQEVPGYF_ 0 0 0 ENSG00000120329|ENST00000239451|SLC25A2 ENSG00000120329|ENST00000239451|SLC25A2 ENSG00000120329|ENST00000239451|SLC25A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.286376953125 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 158.88 1 158.88 158.38 159.38 0 0 0 0 0.22621 1 31902 31902 15.847 5.6638 1 27590 3129 18349 18356 27232 27232 0.024552247287601858 LLQFFDQP 8 Unmodified _LLQFFDQP_ 0 0 0 REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27 REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 504.1073913574219 2 504.263468 1006.51238 0.20343 0.00010258 -1.1584 -0.00058412 -0.95494 -0.00048154 504.26240298423596 151.51 0.80365 151.51 151.1 151.9 0 32 22 2 0 0 0 1.0249 1 30368 30368 0 0 1 1201200 + 27591 16989 18350 18357 27233 27233 0.009386690402379827 LLQFFDQP 8 Unmodified _LLQFFDQP_ 0 0 0 REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27 REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 504.263468 1006.51238 -0.10877 -5.4847E-05 -0.99945 -0.00050398 -1.1082 -0.00055883 504.2623745625331 157.15 1.2256 151.87 151.31 152.53 -5.2854 0.18609 -5.9852E-05 NaN 0 76 34 3 NaN NaN NaN NaN 0 NaN NaN 0 1985200 + 27592 16989 18350 18357 0.009386690402379827 LLQFFDQP 8 Unmodified _LLQFFDQP_ 0 0 0 REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27 REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 504.263468 1006.51238 0.30438 0.00015349 -0.61578 -0.00031052 -0.31141 -0.00015703 504.76534788577266 156.93 0.98779 151.66 151.26 152.25 -5.2712 -0.017312 0.00032708 NaN 0 43 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1739200 + 27593 16989 18350 18357 0.009386690402379827 LLQGAHAVGP 10 Unmodified _LLQGAHAVGP_ 0 0 0 REV__ENSG00000135045|ENST00000376854|C9orf40 REV__ENSG00000135045|ENST00000376854|C9orf40 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77325439453125 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 94.74 1 90.549 90.049 91.049 -4.1911 0 0 0 0.22588 1 18079 18079 7.2892 0.93513 1 + 27594 16241 18351 18358 27234 27234 0.05220893508658264 LLQKAELGL 9 Unmodified _LLQKAELGL_ 0 0 0 ENST00000480329.5_1_20:44979343-44983832:-|nuORF;nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2 ENST00000480329.5_1_20:44979343-44983832:-|nuORF ENST00000480329.5_1_20:44979343-44983832:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 492.2787170410156 2 492.808042 983.601532 0.62494 0.00030798 -0.31738 -0.00015641 0.30757 0.00015157 492.8078434569602 121.24 0.90781 116.55 115.97 116.87 -4.6873 63 25 3 0 0 0 0.53499 1 23163 23163 0.40827 0.2854 1 5840500 27595 1608 18352 18359 27235 27235 0.10907503999737855 LLQKFVPEI 9 Unmodified _LLQKFVPEI_ 0 0 0 QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;QSER1|p.I1584*|1|0.24|ENSG00000060749|chr11:32969069-32969069|A/-|frameshift_variant;ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1 QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7957153320312 2 543.831517 1085.64848 NaN NaN NaN NaN NaN NaN NaN 149.97 1 149.97 149.47 150.47 0 0 0 0 0.12123 1 30022 30022 34.402 0 1 27596 1313 18353 18360 27236 27236 0.10908363550902322 LLQKFVPEI 9 Unmodified _LLQKFVPEI_ 0 0 0 QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;QSER1|p.I1584*|1|0.24|ENSG00000060749|chr11:32969069-32969069|A/-|frameshift_variant;ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1 QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7913208007812 2 543.831517 1085.64848 0.17499 9.5164E-05 0.21144 0.00011499 0.38643 0.00021015 543.8314613473817 155.16 0.53928 149.88 149.57 150.11 -5.2854 21 14 2 0 0 0 0.36034 1 30110 30110 43.858 9.7559 1 680640 27597 1313 18353 18360 27237 27237 0.10908363550902322 LLQKRRKETRF 11 Unmodified _LLQKRRKETRF_ 0 0 0 TYRO3|p.R452Q|1|0.11|ENSG00000092445|chr15:41570129-41570129|G/A|missense_variant TYRO3|p.R452Q|1|0.11|ENSG00000092445|chr15:41570129-41570129|G/A|missense_variant TYRO3|p.R452Q|1|0.11|ENSG00000092445|chr15:41570129-41570129|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 738.2152099609375 2 737.951884 1473.88921 NaN NaN NaN NaN NaN NaN NaN 175.15 1 170.26 169.76 170.76 -4.8845 0 0 0 0.22632 1 34822 34822 0.172 0.14579 1 27598 26541 18354 18361 27238 27238 0.17122572590824348 LLQLFYRKFKK 11 Unmodified _LLQLFYRKFKK_ 0 0 0 REV__ENSG00000144891|ENST00000349243|AGTR1 REV__ENSG00000144891|ENST00000349243|AGTR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.378662109375 2 742.461022 1482.90749 NaN NaN NaN NaN NaN NaN NaN 93.785 1 89.794 89.294 90.294 -3.9907 0 0 0 0.22632 1 18373 18373 0 0 1 + 27599 16811 18355 18362 27239 27239 0.18535314512791956 LLQLRLALLV 10 Unmodified _LLQLRLALLV_ 0 0 0 KDELC2|p.P302Lfs*16|1|0.05|ENSG00000178202|chr11:108481373-108481374|-/GATATTTCTTTTTCCAAGAGAAAGAAAAGGA|frameshift_variant;KDELC2|p.S303Vfs*36|1|0.07|ENSG00000178202|chr11:108481371-108481372|-/ATTAC|frameshift_variant;ENSG00000178202|ENST00000323468|POGLUT3 KDELC2|p.P302Lfs*16|1|0.05|ENSG00000178202|chr11:108481373-108481374|-/GATATTTCTTTTTCCAAGAGAAAGAAAAGGA|frameshift_variant KDELC2|p.P302Lfs*16|1|0.05|ENSG00000178202|chr11:108481373-108481374|-/GATATTTCTTTTTCCAAGAGAAAGAAAAGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3220825195312 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 137.03 1 137.03 136.53 137.53 0 0 0 0 2.8426 1 27165 27165 0.0013812 0 1 27600 6566 18356 18363 27240 27240 0.21080593638635037 LLQLRLNYF 9 Unmodified _LLQLRLNYF_ 0 0 0 ENST00000497931.5_1_X:100870240-100870444:-|nuORF ENST00000497931.5_1_X:100870240-100870444:-|nuORF ENST00000497931.5_1_X:100870240-100870444:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2607421875 2 590.347866 1178.68118 NaN NaN NaN NaN NaN NaN NaN 158.71 1 153.44 152.94 153.94 -5.2712 0 0 0 0.19652 1 30792 30792 0.40827 0.23627 1 27601 10595 18357 18364 27241 27241 0.09898570673726681 LLQPAPLPA 9 Unmodified _LLQPAPLPA_ 0 0 0 REV__ENST00000505626.5_1_5:6586416-6586641:+|nuORF REV__ENST00000505626.5_1_5:6586416-6586641:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.52923583984375 2 460.284203 918.553853 0.49856 0.00022948 -0.19374 -8.9176E-05 0.30482 0.0001403 460.28399579584345 115.97 2.3937 111.61 110.26 112.66 -4.3585 141 67 3 0 0 0 0.77219 1 22263 22263 5.2307 0 1 2561800 + 27602 22478 18358 18365 27242 27242 0.09131849799541669 LLQPCSSVD 9 Unmodified _LLQPCSSVD_ 0 0 0 ATP10A|p.K791Rfs*28|1|0.23|ENSG00000206190|chr15:25708273-25708273|T/-|frameshift_variant;ENSG00000206190|ENST00000555815|ATP10A;ENST00000555815.5_1_15:25924490-25961922:-|nuORF ATP10A|p.K791Rfs*28|1|0.23|ENSG00000206190|chr15:25708273-25708273|T/-|frameshift_variant ATP10A|p.K791Rfs*28|1|0.23|ENSG00000206190|chr15:25708273-25708273|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23626708984375 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 144.54 1 144.54 144.04 145.04 0 0 0 0 0.19687 1 28879 28879 8.1555 0 1 27603 261 18359 18366 27243 27243 -0.02317871453783482 LLQPRGGAP 9 Unmodified _LLQPRGGAP_ 0 0 0 REV__ENST00000222345.10_1_19:38571896-38571965:+|nuORF REV__ENST00000222345.10_1_19:38571896-38571965:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 454.77117919921875 2 454.769252 907.52395 NaN NaN NaN NaN NaN NaN NaN 137.52 1 132.88 132.38 133.38 -4.6413 0 0 0 0.18274 1 27143 27143 0.37959 0.12811 1 + 27604 20032 18360 18367 27244 27244 0.06648910854232781 LLQQADEL 8 Unmodified _LLQQADEL_ 0 0 0 nc|ENSG00000137824|Q96TC7-2|RMDN3;ENSG00000137824|ENST00000338376|RMDN3 nc|ENSG00000137824|Q96TC7-2|RMDN3 nc|ENSG00000137824|Q96TC7-2|RMDN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2501220703125 2 465.250557 928.486562 0.13745 6.3951E-05 -0.515 -0.00023961 -0.37755 -0.00017566 465.2502096982489 111.29 0.729 111.29 110.96 111.69 0 35 20 2 0 0 0 0.72861 1 21967 21967 10.183 0 1 2653900 27605 4117 18361 18368 27245 27245 0.01945774797957256 LLQQLEAD 8 Unmodified _LLQQLEAD_ 0 0 0 WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant;ENSG00000165392|ENST00000298139|WRN WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25897216796875 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 99.655 1 95.698 95.198 96.198 -3.9564 0 0 0 0.21486 1 19137 19137 10.183 0 1 27606 5624 18362 18369 27246 27246 0.01945774797957256 LLQRVAWRRWW 11 Unmodified _LLQRVAWRRWW_ 0 0 0 ENST00000497184.5_1_7:44091401-44091476:+|nuORF ENST00000497184.5_1_7:44091401-44091476:+|nuORF ENST00000497184.5_1_7:44091401-44091476:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6932983398438 3 523.968633 1568.88407 -0.12088 -6.3339E-05 2.1303 0.0011162 2.0095 0.0010529 523.970243991919 142.13 0.17163 137.48 137.34 137.51 -4.6524 5 4 2 0 0 0 0.89084 1 28074 28074 0.00056442 0 1 2281500 27607 10586 18363 18370 27247 27247 0.12238313518855648 LLQSALDF 8 Unmodified _LLQSALDF_ 0 0 0 ENST00000513935.1_1_4:906456-925975:-|nuORF;GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK ENST00000513935.1_1_4:906456-925975:-|nuORF ENST00000513935.1_1_4:906456-925975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74981689453125 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 113.69 1 109.42 108.92 109.92 -4.2725 0 0 0 0.21486 1 21895 21895 9.3474 2.9933 1 27608 6597 18364 18371 27248 27248 0.02930980148892104 LLQTHPFNYK 10 Unmodified _LLQTHPFNYK_ 0 0 0 REV__nc|ENSG00000107614|O14717-3|TRDMT1 REV__nc|ENSG00000107614|O14717-3|TRDMT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7645263671875 2 630.840405 1259.66626 NaN NaN NaN NaN NaN NaN NaN 82.937 1 79.064 78.564 79.564 -3.8736 0 0 0 0.22583 1 15750 15750 13.906 3.0821 1 + 27609 15087 18365 18372 27249 27249 0.046810788057428 LLQTSKKR 8 Unmodified _LLQTSKKR_ 0 0 0 USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant;nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47 USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 487.2341613769531 2 487.311284 972.608014 0.1003 4.8879E-05 1.0647 0.00051886 1.1651 0.00056774 487.31187197188257 149.28 0.603 144.16 143.75 144.35 -5.1204 20 16 2 0 0 0 8448 1 28914 28914 3.2813 0 1 1679200 27610 6050 18366 18373 27250 27250 0.12061441951129837 LLQWHALSR 9 Unmodified _LLQWHALSR_ 0 0 0 ENST00000524342.5_1_5:133478626-133478800:+|nuORF ENST00000524342.5_1_5:133478626-133478800:+|nuORF ENST00000524342.5_1_5:133478626-133478800:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2166748046875 3 375.217214 1122.62981 NaN NaN NaN NaN NaN NaN NaN 160.87 1 156.08 155.58 156.58 -4.7952 0 0 0 0.23508 1 31991 31991 4.1895 0 1 27611 10880 18367 18374 27251 27251 0.07340246699686759 LLQYSYRSPSY 11 Unmodified _LLQYSYRSPSY_ 0 0 0 REV__ENST00000413704.5_1_3:9487316-9517772:+|nuORF REV__ENST00000413704.5_1_3:9487316-9517772:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5448913574219 3 459.566348 1375.67722 -0.29345 -0.00013486 0.3086 0.00014182 0.01515 6.9624E-06 459.56647796948016 112.55 0.83854 108.1 107.63 108.47 -4.4538 97 23 6 0 0 0 0.81642 1 22172 22172 1.4551 0 1 39663000 + 27612 17999 18368 18375 27252 27252 0.004404363893854679 LLRAGSSTKF 10 Unmodified _LLRAGSSTKF_ 0 0 0 ENST00000542056.1_1_12:13044524-13065021:+|nuORF;ENST00000537783.1_1_12:13044524-13062212:+|nuORF ENST00000542056.1_1_12:13044524-13065021:+|nuORF ENST00000542056.1_1_12:13044524-13065021:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2020568847656 3 360.545108 1078.61349 -0.33395 -0.00012041 0.32656 0.00011774 -0.0073896 -2.6643E-06 360.54525097231516 71.828 0.42336 71.828 71.529 71.952 0 17 11 2 0 0 0 0.87904 1 13867 13867 11.518 6.802 1 1626100 27613 11043 18369 18376 27253 27253 0.0773312074295518 LLRARRLAP 9 Unmodified _LLRARRLAP_ 0 0 0 REV__ENST00000274853.7_1_6:30654254-30654479:-|nuORF REV__ENST00000274853.7_1_6:30654254-30654479:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2765502929688 2 533.353817 1064.69308 NaN NaN NaN NaN NaN NaN NaN 158.46 1 153.67 153.17 154.17 -4.7952 0 0 0 0.23508 1 31510 31510 2.3027 0 1 + 27614 20288 18370 18377 27254 27254 0.1633223220758282 LLRCPRHIPR 10 Unmodified _LLRCPRHIPR_ 0 0 0 REV__ENST00000377834.8_1_1:6478873-6479209:-|nuORF REV__ENST00000377834.8_1_1:6478873-6479209:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7745361328125 2 630.877133 1259.73971 NaN NaN NaN NaN NaN NaN NaN 119.79 1 115.33 114.83 115.83 -4.467 0 0 0 0.22588 1 23062 23062 7.2892 1.5574 1 + 27615 21107 18371 18378 27255 27255 0.12023348767206699 LLRDKERL 8 Unmodified _LLRDKERL_ 0 0 0 REV__ENSG00000168286|ENST00000303596|THAP11 REV__ENSG00000168286|ENST00000303596|THAP11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2627563476562 2 521.822015 1041.62948 0.23182 0.00012097 -0.12297 -6.4167E-05 0.10885 5.6802E-05 521.8219040106626 97.164 0.45792 97.164 96.979 97.437 0 22 12 2 0 0 0 0.75825 1 19055 19055 27.629 7.1752 1 2363900 + 27616 18012 18372 18379 27256 27256 0.11032826979840138 LLRDSESIPG 10 Unmodified _LLRDSESIPG_ 0 0 0 nc|ENSG00000198574|O14796-2|SH2D1B;ENST00000493550.1_1_1:162372447-162381806:-|nuORF;ENSG00000198574|ENST00000367929|SH2D1B nc|ENSG00000198574|O14796-2|SH2D1B nc|ENSG00000198574|O14796-2|SH2D1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79443359375 2 543.793121 1085.57169 0.831 0.00045189 -1.0962 -0.00059611 -0.26521 -0.00014422 543.7940386810212 105.46 0.13988 101.37 101.29 101.43 -4.0913 5 3 2 0 0 0 0.664 1 20296 20296 14.838 3.198 1 481090 27617 7460 18373 18380 27257 27257 0.032325202637593975 LLREKVASV 9 Unmodified _LLREKVASV_ 0 0 0 ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.2588806152344 2 507.818941 1013.62333 0.082471 4.1881E-05 -0.17977 -9.1292E-05 -0.097301 -4.9411E-05 507.81886201242895 124.14 0.60115 119.56 119.27 119.87 -4.5757 40 16 3 0 0 0 0.53499 1 24470 24470 1.6919 0.47705 1 2979000 27618 6556 18374 18381 27258 27258 0.1170630874833023 LLREKVASV 9 Unmodified _LLREKVASV_ 0 0 0 ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 507.818941 1013.62333 0.028158 1.4299E-05 0.084509 4.2915E-05 0.11267 5.7214E-05 507.8188863519889 124.39 0.49784 119.62 119.42 119.92 -4.7681 -0.017354 0.00015613 NaN 1.6919 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2924700 27619 6556 18374 18381 0.1170630874833023 LLREKVASV 9 Unmodified _LLREKVASV_ 0 0 0 ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 507.818941 1013.62333 0.17338 8.8046E-05 -0.11579 -5.88E-05 0.057592 2.9246E-05 507.8188479673846 124.33 0.6183 119.74 119.4 120.02 -4.5926 0.09684 -4.7299E-05 NaN 1.6919 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3457200 27620 6556 18374 18381 0.1170630874833023 LLRFLIVGL 9 Unmodified _LLRFLIVGL_ 0 0 0 REV__ENSG00000204669|ENST00000651200|C9orf57 REV__ENSG00000204669|ENST00000651200|C9orf57 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2699584960938 2 522.35242 1042.69029 NaN NaN NaN NaN NaN NaN NaN 133.14 1 128.28 127.78 128.78 -4.8527 0 0 0 0.23508 1 25575 25575 5.2307 0 1 + 27621 19560 18375 18382 27259 27259 0.17064964030100782 LLRFWVNALK 10 Unmodified _LLRFWVNALK_ 0 0 0 ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3 ENSG00000198753|ENST00000361971|PLXNB3 ENSG00000198753|ENST00000361971|PLXNB3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7721557617188 2 630.384783 1258.75501 0.27264 0.00017187 4.3178 0.0027219 4.5904 0.0028937 630.387888524812 131.84 0.13615 126.98 126.91 127.04 -4.8527 5 3 2 0 0 0 0.91149 1 25305 25305 3.2813 0.28607 1 1200800 27622 7486 18376 18383 27260 27260 0.13598538836049556 LLRGCRYY 8 Unmodified _LLRGCRYY_ 0 0 0 REV__sp|F5H9Z4|UL20_HCMVMMembraneproteinUL20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL20PE=3SV=1 REV__sp|F5H9Z4|UL20_HCMVMMembraneproteinUL20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL20PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2684936523438 2 522.276386 1042.53822 NaN NaN NaN NaN NaN NaN NaN 125.63 1 120.98 120.48 121.48 -4.6495 0 0 0 0.21486 1 24171 24171 11.114 0 1 + 27623 24675 18377 18384 27261 27261 0.018652400108749134 LLRGPTSY 8 Unmodified _LLRGPTSY_ 0 0 0 REV__MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|36|3|anti-sense REV__MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|36|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7551574707031 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 130.55 1 130.55 130.05 131.05 0 0 0 0 0.21486 1 25803 25803 10.183 0 1 + 27624 23845 18378 18385 27262 27262 0.040538022430382625 LLRHLFGPL 9 Unmodified _LLRHLFGPL_ 0 0 0 REV__ACTR10|p.A335Hfs*63|1|0.4|ENSG00000131966|chr14:58232192-58232192|A/-|frameshift_variant REV__ACTR10|p.A335Hfs*63|1|0.4|ENSG00000131966|chr14:58232192-58232192|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2689208984375 2 533.332019 1064.64948 NaN NaN NaN NaN NaN NaN NaN 130.76 1 130.76 130.26 131.26 0 0 0 0 0.19656 1 25849 25849 0.40827 0 1 + 27625 12928 18379 18386 27263 27263 0.11974622710454241 LLRILKKY 8 Unmodified _LLRILKKY_ 0 0 0 tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1 tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1 tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6909790039062 2 523.85787 1045.70119 0.17988 9.4233E-05 -2.6228 -0.001374 -2.4429 -0.0012797 523.8581361115231 126.95 0.10125 126.95 126.88 126.99 0 4 2 2 0 0 0 0.89951 1 25052 25052 0.12286 0 1 754020 27626 26258 18380 18387 27264 27264 0.18016366404367545 LLRILKKY 8 Unmodified _LLRILKKY_ 0 0 0 tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1 tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1 tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6905517578125 2 523.85787 1045.70119 0.01924 1.0079E-05 -0.53419 -0.00027984 -0.51495 -0.00026976 523.8563062339872 123.19 0.17934 118.61 118.49 118.67 -4.5757 6 4 2 0 0 0 0.89951 1 24262 24262 0.12286 0 1 571680 27627 26258 18380 18387 27265 27265 0.18016366404367545 LLRLAARLR 9 Unmodified _LLRLAARLR_ 0 0 0 REV__ENST00000242108.8_1_7:36192980-36193091:+|nuORF REV__ENST00000242108.8_1_7:36192980-36193091:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2689819335938 2 541.369467 1080.72438 NaN NaN NaN NaN NaN NaN NaN 115.03 1 110.47 109.97 110.97 -4.555 0 0 0 0.19624 1 22085 22085 0 0 1 + 27628 20089 18381 18388 27266 27266 0.1872480524166349 LLRLFLRL 8 Unmodified _LLRLFLRL_ 0 0 0 REV__ENST00000554778.1_3_14:52118819-52156529:+|nuORF REV__ENST00000554778.1_3_14:52118819-52156529:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2711181640625 2 522.358037 1042.70152 NaN NaN NaN NaN NaN NaN NaN 135.17 1 135.17 134.67 135.67 0 0 0 0 0.23711 1 26771 26771 0.12286 0 1 + 27629 22978 18382 18389 27267 27267 0.18187786124212835 LLRLRRIHH 9 Unmodified _LLRLRRIHH_ 0 0 0 ENSG00000198018|ENST00000370489|ENTPD7 ENSG00000198018|ENST00000370489|ENTPD7 ENSG00000198018|ENST00000370489|ENTPD7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.2768859863281 3 405.263269 1212.76798 NaN NaN NaN NaN NaN NaN NaN 13.736 1 12.563 12.063 13.063 -1.173 0 0 0 0.23508 1 1809 1809 0.26902 0.1097 1 27630 7423 18383 18390 27268 27268 0.17010414738820145 LLRLRVQAP 9 Unmodified _LLRLRVQAP_ 0 0 0 ENST00000340134.4_1_11:1769161-1771748:-|nuORF ENST00000340134.4_1_11:1769161-1771748:-|nuORF ENST00000340134.4_1_11:1769161-1771748:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2846069335938 2 533.3482 1064.68185 NaN NaN NaN NaN NaN NaN NaN 133.97 1 129.1 128.6 129.6 -4.8726 0 0 0 0.23508 1 25739 25739 5.2307 0 1 27631 8845 18384 18391 27269 27269 0.15209410113470767 LLRNWSKSKK 10 Unmodified _LLRNWSKSKK_ 0 0 0 ENSG00000146233|ENST00000275016|CYP39A1 ENSG00000146233|ENST00000275016|CYP39A1 ENSG00000146233|ENST00000275016|CYP39A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7684936523438 2 630.382771 1258.75099 NaN NaN NaN NaN NaN NaN NaN 68.412 1 64.876 64.376 65.376 -3.5362 0 0 0 0.22588 1 12855 12855 9.3831 2.66 1 27632 4646 18385 18392 27270 27270 0.13196449342353844 LLRPLAWLV 9 Unmodified _LLRPLAWLV_ 0 0 0 nc|ENSG00000167536|Q6UX07-3|DHRS13;nc|ENSG00000167536|Q6UX07-2|DHRS13;DHRS13|p.H340Tfs*23|1|0.32|ENSG00000167536|chr17:28898557-28898557|G/-|frameshift_variant;ENSG00000167536|ENST00000378895|DHRS13;DHRS13|p.R256Q|1|0.39|ENSG00000167536|chr17:28898808-28898808|C/T|missense_variant nc|ENSG00000167536|Q6UX07-3|DHRS13 nc|ENSG00000167536|Q6UX07-3|DHRS13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.9079284667969 3 360.902455 1079.68554 NaN NaN NaN NaN NaN NaN NaN 11.212 1 11.212 10.712 11.712 0 0 0 0 0.23508 1 1468 1468 0 0 1 27633 826 18386 18393 27271 27271 0.14888079887282402 LLRPRLRRA 9 Unmodified _LLRPRLRRA_ 0 0 0 ENST00000349431.10_1_1:1209083-1209236:-|nuORF ENST00000349431.10_1_1:1209083-1209236:-|nuORF ENST00000349431.10_1_1:1209083-1209236:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3299560546875 2 575.885816 1149.75708 0.15168 8.7348E-05 1.1476 0.0006609 1.2993 0.00074825 576.3864426645503 134.65 0.20859 129.78 129.61 129.82 -4.8726 6 5 2 0 0 0 0.65257 1 25865 25865 0.0033805 0 1 1061200 27634 8921 18387 18394 27272 27272 0.18819012364565424 LLRPRLRRA 9 Unmodified _LLRPRLRRA_ 0 0 0 ENST00000349431.10_1_1:1209083-1209236:-|nuORF ENST00000349431.10_1_1:1209083-1209236:-|nuORF ENST00000349431.10_1_1:1209083-1209236:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3319702148438 2 575.885816 1149.75708 0.22131 0.00012745 0.67979 0.00039148 0.9011 0.00051893 576.386612819126 134.63 0.099304 129.81 129.73 129.83 -4.8175 4 2 2 0 0 0 0.88433 1 25907 25907 0 0 1 1058900 27635 8921 18387 18394 27273 27273 0.18819012364565424 LLRRGTEV 8 Unmodified _LLRRGTEV_ 0 0 0 REV__EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant REV__EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 473.2730407714844 2 472.287808 942.561064 0.14283 6.7457E-05 0.13514 6.3824E-05 0.27797 0.00013128 472.2877701595885 161.03 0.9924 155.8 155.4 156.39 -5.2298 77 27 4 0 0 0 8448 1 31345 31345 0.12286 0 1 23982000 + 27636 13804 18388 18395 27274 27274 0.08748582400005489 LLRRGTEV 8 Unmodified _LLRRGTEV_ 0 0 0 REV__EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant REV__EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 472.287808 942.561064 0.14019 6.6209E-05 0.021829 1.0309E-05 0.16202 7.6518E-05 472.2877009530663 160.37 0.88676 155.57 155.15 156.04 -4.7952 -0.10826 5.5163E-05 NaN 0.12286 65 24 3 NaN NaN NaN NaN 0 NaN NaN 0 25094000 + 27637 13804 18388 18395 0.08748582400005489 LLRRGTEV 8 Unmodified _LLRRGTEV_ 0 0 0 REV__EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant REV__EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 472.287808 942.561064 0.45708 0.00021587 -0.21541 -0.00010174 0.24166 0.00011413 472.2875845370758 160.92 1.1263 155.66 155.25 156.37 -5.2527 -0.016139 -0.00016893 NaN 0.12286 88 31 4 NaN NaN NaN NaN 0 NaN NaN 0 32267000 + 27638 13804 18388 18395 0.08748582400005489 LLRRLAPAR 9 Unmodified _LLRRLAPAR_ 0 0 0 REV__ENSG00000167619|ENST00000301204|TMEM145 REV__ENSG00000167619|ENST00000301204|TMEM145 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.06884765625 3 355.90497 1064.69308 -0.47532 -0.00016917 0.44535 0.0001585 -0.02997 -1.0667E-05 355.90510873585094 54.99 0.61954 52.106 51.906 52.525 -2.8837 27 17 2 0 0 0 0.88413 1 10574 10574 0 0 1 5025300 + 27639 17946 18389 18396 27275 27275 0.1633223220758282 LLRTFEPDP 9 Unmodified _LLRTFEPDP_ 0 0 0 nc|ENSG00000142733|O95382-2|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6 nc|ENSG00000142733|O95382-2|MAP3K6 nc|ENSG00000142733|O95382-2|MAP3K6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.794921875 2 544.292756 1086.57096 -0.036152 -1.9677E-05 0.32376 0.00017622 0.28761 0.00015654 544.293023588505 105.12 0.66916 100.9 100.54 101.21 -4.2183 36 18 3 0 0 0 0.73268 1 20643 20643 24.021 5.8742 1 3702700 27640 4440 18390 18397 27276 27276 0.031137256147076187 LLRTFLRF 8 Unmodified _LLRTFLRF_ 0 0 0 nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2838745117188 2 533.332019 1064.64948 NaN NaN NaN NaN NaN NaN NaN 130.79 1 130.79 130.29 131.29 0 0 0 0 0.21486 1 25855 25855 12.532 3.1841 1 27641 1244 18391 18398 27277 27277 0.11974622710454241 LLRVLIHVLR 10 Unmodified _LLRVLIHVLR_ 0 0 0 REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 616.497802734375 2 616.4217 1230.82885 NaN NaN NaN NaN NaN NaN NaN 166.88 1 161.98 161.48 162.48 -4.8916 0 0 0 2.8426 1 32747 32747 0.043787 0 1 + 27642 21648 18392 18399 27278 27278 0.22266506998403202 LLRVRDHLQYR 11 Unmodified _LLRVRDHLQYR_ 0 0 0 REV__nc|ENSG00000165195|P37287-3|PIGA REV__nc|ENSG00000165195|P37287-3|PIGA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2655334472656 3 490.288031 1467.84226 NaN NaN NaN NaN NaN NaN NaN 71.331 1 67.751 67.251 68.251 -3.5798 0 0 0 0.22632 1 13450 13450 1.4551 1.4289 1 + 27643 17745 18393 18400 27279 27279 0.12705713039690636 LLRWTTAT 8 Unmodified _LLRWTTAT_ 0 0 0 ENSG00000151779|ENST00000281513|NBAS;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS ENSG00000151779|ENST00000281513|NBAS ENSG00000151779|ENST00000281513|NBAS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7787170410156 2 481.276909 960.539266 0.028372 1.3655E-05 0.078599 3.7828E-05 0.10697 5.1483E-05 481.27695501245694 60.203 1.8683 57.27 56.469 58.337 -2.9333 76 53 2 0 0 0 0.68128 1 11677 11677 16.942 0 1 1561600 27644 4887 18394 18401 27280 27280 0.05741777651417124 LLSAPWYL 8 Unmodified _LLSAPWYL_ 0 0 0 ENST00000566672.5_1_15:72638574-72647950:-|nuORF;ENSG00000213614|ENST00000268097|HEXA ENST00000566672.5_1_15:72638574-72647950:-|nuORF ENST00000566672.5_1_15:72638574-72647950:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7696533203125 2 481.770929 961.527304 NaN NaN NaN NaN NaN NaN NaN 84.965 1 81.301 80.801 81.801 -3.6641 0 0 0 0.21181 1 16608 16608 15.768 0 1 27645 7700 18395 18402 27281 27281 0.04500160908230555 LLSCDEDI 8 Unmodified _LLSCDEDI_ 0 0 0 tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1 tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1 tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7473449707031 2 454.207501 906.400449 NaN NaN NaN NaN NaN NaN NaN 76.706 1 73.291 72.791 73.791 -3.4151 0 0 0 0.21486 1 14971 14971 9.3474 0 1 27646 26267 18396 18403 27282 27282 -0.056495530990673615 LLSDLIPIV 9 Unmodified _LLSDLIPIV_ 0 0 0 REV__ENSG00000023445|ENST00000263464|BIRC3 REV__ENSG00000023445|ENST00000263464|BIRC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 328.2599182128906 3 328.210954 981.611034 NaN NaN NaN NaN NaN NaN NaN 116.98 1 112.5 112 113 -4.486 0 0 0 0.23508 1 23061 23061 1.1933 0 1 + 27647 13993 18397 18404 27283 27283 0.1194927228528968 LLSDTVQHL 9 Unmodified _LLSDTVQHL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 513.2283325195312 2 513.284931 1024.55531 0.043252 2.2201E-05 0.91229 0.00046827 0.95554 0.00049047 513.2850500635973 97.767 0.99288 93.848 93.643 94.636 -3.9194 51 28 2 0 0 0 0.27464 1 18776 18776 37.075 19.962 1 2476400 27648 5760 18398 18405 27284 27284 0.044014390976599316 LLSEASDAL 9 Unmodified _LLSEASDAL_ 0 0 0 REV__nc|ENSG00000104660|O95214-2|LEPROTL1 REV__nc|ENSG00000104660|O95214-2|LEPROTL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.244140625 2 459.742565 917.470577 -0.06075 -2.793E-05 0.52405 0.00024093 0.4633 0.000213 459.74259994178277 115.63 0.51286 111.15 110.84 111.36 -4.4726 20 14 2 0 0 0 0.24143 1 22773 22773 2.8827 0 1 1045200 + 27649 23985 18399 18406 27285 27285 0.008540685610341825 LLSEEVELY 9 Unmodified _LLSEEVELY_ 0 0 0 ENST00000555252.5_1_14:64855058-64907131:+|nuORF;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENSG00000100714|ENST00000652337|MTHFD1;ENST00000413059.1_1_X:57419910-57420861:-|nuORF ENST00000555252.5_1_14:64855058-64907131:+|nuORF ENST00000555252.5_1_14:64855058-64907131:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7813110351562 2 547.78443 1093.55431 NaN NaN NaN NaN NaN NaN NaN 135.47 1 130.83 130.33 131.33 -4.6399 0 0 0 0.23411 1 26720 26720 13.508 0 1 27650 2007 18400 18407 27286 27286 0.011271799381120218 LLSEHGEVKL 10 Unmodified _LLSEHGEVKL_ 0 0 0 ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24 ENSG00000102572|ENST00000539966|STK24 ENSG00000102572|ENST00000539966|STK24 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2067565917969 3 375.548518 1123.62372 0.096828 3.6364E-05 -0.086177 -3.2363E-05 0.010651 4.0001E-06 375.54839048035404 76.134 0.34068 72.411 72.346 72.686 -3.7227 14 9 2 0 0 0 0.90598 1 14455 14455 1.4551 0 1 681710 27651 2137 18401 18408 27287 27287 0.06685683677528687 LLSEKCNQF 9 Unmodified _LLSEKCNQF_ 0 0 0 ENSG00000165325|ENST00000298050|DEUP1 ENSG00000165325|ENST00000298050|DEUP1 ENSG00000165325|ENST00000298050|DEUP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2689208984375 2 541.270967 1080.52738 0.13644 7.385E-05 -1.0955 -0.00059298 -0.9591 -0.00051913 541.2689908970009 91.13 0.98174 91.13 90.58 91.561 0 50 27 3 0 0 0 0.19983 1 17807 17807 0.37959 0 1 2537000 27652 5620 18402 18409 27288 27288 -0.00966207154078802 LLSELLGSLG 10 Unmodified _LLSELLGSLG_ 0 0 0 nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2 nc|ENSG00000145703|Q13576-3|IQGAP2 nc|ENSG00000145703|Q13576-3|IQGAP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 501.7807312011719 2 501.297507 1000.58046 -0.025591 -1.2829E-05 0.25374 0.0001272 0.22815 0.00011437 501.2975953476982 92.891 0.71548 92.891 92.51 93.226 0 35 20 2 0 0 0 0.11007 1 18168 18168 25.997 13.77 1 4079000 27653 4614 18403 18410 27289 27289 0.08019493900235375 LLSELLGSLG 10 Unmodified _LLSELLGSLG_ 0 0 0 nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2 nc|ENSG00000145703|Q13576-3|IQGAP2 nc|ENSG00000145703|Q13576-3|IQGAP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 501.297507 1000.58046 0.030519 1.5299E-05 0.25494 0.0001278 0.28545 0.0001431 501.2975987041411 96.755 0.62598 92.657 92.314 92.94 -4.0978 -0.074949 -8.9264E-05 NaN 25.997 47 17 4 NaN NaN NaN NaN 0 NaN NaN 0 6178400 27654 4614 18403 18410 0.08019493900235375 LLSELLGSLG 10 Unmodified _LLSELLGSLG_ 0 0 0 nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2 nc|ENSG00000145703|Q13576-3|IQGAP2 nc|ENSG00000145703|Q13576-3|IQGAP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 501.297507 1000.58046 -0.05857 -2.9361E-05 0.37244 0.0001867 0.31387 0.00015734 501.2976407980777 96.917 0.54395 92.682 92.405 92.949 -4.2348 -0.049934 2.8548E-05 NaN 25.997 29 15 2 NaN NaN NaN NaN 0 NaN NaN 0 6513800 27655 4614 18403 18410 0.08019493900235375 LLSELLGSLG 10 Unmodified _LLSELLGSLG_ 0 0 0 nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2 nc|ENSG00000145703|Q13576-3|IQGAP2 nc|ENSG00000145703|Q13576-3|IQGAP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 501.297507 1000.58046 -0.1832 -9.1836E-05 0.47432 0.00023778 0.29113 0.00014594 501.2977057372721 96.618 0.79117 92.698 92.436 93.228 -3.9194 -0.03399 0.00013069 NaN 25.997 37 22 2 NaN NaN NaN NaN 0 NaN NaN 0 6447900 27656 4614 18403 18410 0.08019493900235375 LLSHAGILKV 10 Unmodified _LLSHAGILKV_ 0 0 0 nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000008128|Q9UQ88-9|CDK11A;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000463652.5_1_1:1635130-1635691:-|nuORF nc|ENSG00000248333|P21127|CDK11B nc|ENSG00000248333|P21127|CDK11B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.1908264160156 3 350.893848 1049.65972 -0.24296 -8.5252E-05 -0.021194 -7.4369E-06 -0.26415 -9.2689E-05 350.8938339560014 98.559 0.45259 94.426 94.193 94.645 -4.1326 18 12 2 0 0 0 0.97718 1 19377 19377 38.176 25.935 1 1001900 27657 1037 18404 18411 27290 27290 0.1368718564503979 LLSHAGILKV 10 Unmodified _LLSHAGILKV_ 0 0 0 nc|ENSG00000248333|P21127|CDK11B;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000008128|Q9UQ88-9|CDK11A;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000463652.5_1_1:1635130-1635691:-|nuORF nc|ENSG00000248333|P21127|CDK11B nc|ENSG00000248333|P21127|CDK11B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 350.893848 1049.65972 0.215 7.5443E-05 -0.25932 -9.0995E-05 -0.044321 -1.5552E-05 350.8937640028441 98.836 0.38838 94.567 94.403 94.791 -4.2692 0.07013 -9.6698E-05 NaN 38.176 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1347000 27658 1037 18404 18411 0.1368718564503979 LLSHCPFL 8 Unmodified _LLSHCPFL_ 0 0 0 nc|ENSG00000167612|Q7Z3H0-1|ANKRD33;ANKRD33|p.G178Vfs*7|1|0.41|ENSG00000167612|chr12:51890849-51890849|G/-|frameshift_variant;ENSG00000167612|ENST00000301190|ANKRD33 nc|ENSG00000167612|Q7Z3H0-1|ANKRD33 nc|ENSG00000167612|Q7Z3H0-1|ANKRD33 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2504577636719 2 465.249306 928.484059 NaN NaN NaN NaN NaN NaN NaN 108.14 1 108.14 107.64 108.64 0 0 0 0 0.21181 1 21265 21265 15.768 4.1279 1 27659 12446 18405 18412 27291 27291 0.016956478592987878 LLSHDAIKAL 10 Unmodified _LLSHDAIKAL_ 0 0 0 ENST00000440612.5_1_2:27322516-27322639:-|nuORF ENST00000440612.5_1_2:27322516-27322639:-|nuORF ENST00000440612.5_1_2:27322516-27322639:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2683715820312 2 540.824224 1079.63389 0.29119 0.00015748 -1.3235 -0.0007158 -1.0323 -0.00055831 540.8251131341332 132.16 0.098785 132.16 132.09 132.19 0 4 2 2 0 0 0 1.1074 1 26124 26124 0.26539 0 1 2004700 27660 9886 18406 18413 27292 27292 0.09726291402739662 LLSIYFYY 8 Unmodified _LLSIYFYY_ 0 0 0 ENST00000507297.5_1_5:138860740-138860965:-|nuORF;ENST00000511850.1_1_5:138858703-138860965:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000515507.5_1_5:138860386-138861812:-|nuORF;ENSG00000184584|ENST00000330794|STING1 ENST00000507297.5_1_5:138860740-138860965:-|nuORF;ENSG00000184584|ENST00000330794|STING1 ENSG00000184584|ENST00000330794|STING1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2824096679688 2 541.283869 1080.55318 NaN NaN NaN NaN NaN NaN NaN 35.898 1 35.898 35.398 36.398 0 0 0 0 0.21486 1 6604 6604 11.114 1.0405 1 27661 10697;6922 18407 18414 27293 27293 0.01613010359847067 LLSIYFYY 8 Unmodified _LLSIYFYY_ 0 0 0 ENST00000507297.5_1_5:138860740-138860965:-|nuORF;ENST00000511850.1_1_5:138858703-138860965:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000515507.5_1_5:138860386-138861812:-|nuORF;ENSG00000184584|ENST00000330794|STING1 ENST00000507297.5_1_5:138860740-138860965:-|nuORF;ENSG00000184584|ENST00000330794|STING1 ENSG00000184584|ENST00000330794|STING1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2742309570312 2 541.283869 1080.55318 NaN NaN NaN NaN NaN NaN NaN 70.983 1 70.983 70.483 71.483 0 0 0 0 0.21486 1 13747 13747 11.114 0.29054 1 27662 10697;6922 18407 18414 27294 27294 0.01613010359847067 LLSKILLKLY 10 Unmodified _LLSKILLKLY_ 0 0 0 tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1 tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1 tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.284423828125 2 602.407392 1202.80023 NaN NaN NaN NaN NaN NaN NaN 132.46 1 127.82 127.32 128.32 -4.6399 0 0 0 0.22588 1 26110 26110 0.45834 0.057624 1 27663 25970 18408 18415 27295 27295 0.20694344578600976 LLSKILLKLY 10 Unmodified _LLSKILLKLY_ 0 0 0 tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1 tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1 tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2996826171875 2 602.407392 1202.80023 NaN NaN NaN NaN NaN NaN NaN 151.96 1 146.73 146.23 147.23 -5.2365 0 0 0 0.22588 1 29459 29459 4.3292 0.73274 1 27664 25970 18408 18415 27296 27296 0.20694344578600976 LLSKPPLLY 9 Unmodified _LLSKPPLLY_ 0 0 0 REV__nc|ENSG00000107614|O14717-3|TRDMT1 REV__nc|ENSG00000107614|O14717-3|TRDMT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2606811523438 2 522.328611 1042.64267 -0.6186 -0.00032311 -1.5141 -0.00079086 -2.1327 -0.001114 522.8290146630965 139.55 0.21309 134.6 134.49 134.71 -4.952 8 5 2 0 0 0 0.85699 1 26835 26835 5.2307 0 1 3050500 + 27665 15087 18409 18416 27297 27297 0.12305265039231017 LLSKSMYYPRD 11 Unmodified _LLSKSMYYPRD_ 0 0 0 REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4 REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2373352050781 3 458.235834 1371.68567 NaN NaN NaN NaN NaN NaN NaN 46.445 1 46.445 45.945 46.945 0 0 0 0 0.22632 1 8748 8748 3.0723 3.0461 1 + 27666 19530 18410 18417 27298 27298 0.014696670343255391 LLSLEANN 8 Unmodified _LLSLEANN_ 0 0 0 TLR7|p.F507Lfs*16|1|0.54|ENSG00000196664|chrX:12887024-12887024|T/-|frameshift_variant;TLR7|p.F670Lfs*8|1|0.32|ENSG00000196664|chrX:12887514-12887514|T/-|frameshift_variant;TLR7|p.N1031Kfs*16|1|0.05|ENSG00000196664|chrX:12888600-12888601|-/ATATCAAGATAAT|frameshift_variant;ENSG00000196664|ENST00000380659|TLR7 TLR7|p.F507Lfs*16|1|0.54|ENSG00000196664|chrX:12887024-12887024|T/-|frameshift_variant TLR7|p.F507Lfs*16|1|0.54|ENSG00000196664|chrX:12887024-12887024|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22845458984375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 64.629 1 64.629 64.129 65.129 0 0 0 0 0.21486 1 12444 12444 8.5933 0 1 27667 7299 18411 18418 27299 27299 0.019015056264606756 LLSLIFIETM 10 Unmodified _LLSLIFIETM_ 0 0 0 REV__tr|U7T8R7|U7T8R7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00145PE=3SV=1 REV__tr|U7T8R7|U7T8R7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00145PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2576293945312 2 590.338318 1178.66208 NaN NaN NaN NaN NaN NaN NaN 93.614 1 89.623 89.123 90.123 -3.9907 0 0 0 0.22569 1 18338 18338 15.847 3.3156 1 + 27668 25475 18412 18419 27300 27300 0.0798985326782713 LLSLVFEPM 9 Unmodified _LLSLVFEPM_ 0 0 0 REV__nc|ENSG00000164398|Q9UKU0-9|ACSL6 REV__nc|ENSG00000164398|Q9UKU0-9|ACSL6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 350.1958312988281 3 350.196428 1047.56745 NaN NaN NaN NaN NaN NaN NaN 106.58 1 106.58 106.08 107.08 0 0 0 0 0.23508 1 20953 20953 1.1933 0 1 + 27669 24138 18413 18420 27301 27301 0.04557339516486536 LLSMDQHSI 9 Unmodified _LLSMDQHSI_ 0 0 0 REV__nc|ENSG00000016402|Q9UHF4-2|IL20RA REV__nc|ENSG00000016402|Q9UHF4-2|IL20RA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2615966796875 2 522.263142 1042.51173 NaN NaN NaN NaN NaN NaN NaN 139.58 1 134.73 134.23 135.23 -4.8492 0 0 0 0.22621 1 26911 26911 15.847 3.3156 1 + 27670 13965 18414 18421 27302 27302 -0.007824936711358532 LLSNICCDY 9 Unmodified _LLSNICCDY_ 0 0 0 REV__nc|ENSG00000015520|Q9UHC9-3|NPC1L1 REV__nc|ENSG00000015520|Q9UHC9-3|NPC1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2816162109375 2 522.230453 1042.44635 NaN NaN NaN NaN NaN NaN NaN 72.528 1 69.217 68.717 69.717 -3.3107 0 0 0 0.23411 1 14135 14135 13.508 3.434 1 + 27671 13961 18415 18422 27303 27303 -0.07317231188494588 LLSNKTSSL 9 Unmodified _LLSNKTSSL_ 0 0 0 ENSG00000135870|ENST00000367696|RC3H1;nc|ENSG00000135870|Q5TC82-2|RC3H1;ENST00000479099.2_1_1:173907861-173910545:-|nuORF ENSG00000135870|ENST00000367696|RC3H1 ENSG00000135870|ENST00000367696|RC3H1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77911376953125 2 481.779482 961.544411 NaN NaN NaN NaN NaN NaN NaN 144.38 1 144.38 143.88 144.88 0 0 0 0 0.21848 1 28846 28846 18.135 0 1 27672 3959 18416 18423 27304 27304 0.06210036723382473 LLSNLDEDY 9 Unmodified _LLSNLDEDY_ 0 0 0 nc|ENSG00000169758|Q2M3C6-2|TMEM266;ENSG00000169758|ENST00000388942|TMEM266 nc|ENSG00000169758|Q2M3C6-2|TMEM266 nc|ENSG00000169758|Q2M3C6-2|TMEM266 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2582397460938 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 126.17 1 121.57 121.07 122.07 -4.5984 0 0 0 0.23508 1 24874 24874 12.532 2.4576 1 27673 6004 18417 18424 27305 27305 -0.039508676184368596 LLSNSSMLP 9 Unmodified _LLSNSSMLP_ 0 0 0 TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;TG|p.E2744Vfs*20|1|0.07|ENSG00000042832|chr8:133134716-133134717|GG/-|frameshift_variant;ENSG00000042832|ENST00000220616|TG TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2452087402344 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 84.586 1 80.677 80.177 81.177 -3.9093 0 0 0 0.22193 1 16079 16079 17.113 1.2657 1 27674 1205 18418 18425 27306 27306 0.013190054429401243 LLSPEITR 8 Unmodified _LLSPEITR_ 0 0 0 ENST00000397766.3_1_15:34394452-34394683:+|nuORF ENST00000397766.3_1_15:34394452-34394683:+|nuORF ENST00000397766.3_1_15:34394452-34394683:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24853515625 2 464.776742 927.538931 0.052329 2.4321E-05 -0.80015 -0.00037189 -0.74782 -0.00034757 464.7762882368938 96.086 0.48306 96.086 95.871 96.354 0 21 13 2 0 0 0 0.70344 1 18835 18835 18.135 2.3668 1 1168100 27675 9473 18419 18426 27307 27307 0.07226357931551775 LLSPHNPAL 9 Unmodified _LLSPHNPAL_ 0 0 0 MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant;ENSG00000112996|ENST00000507110|MRPS30 MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2525634765625 2 481.276909 960.539266 0.0050036 2.4081E-06 0.71429 0.00034377 0.7193 0.00034618 481.277191849025 84.645 0.5212 80.98 80.744 81.265 -3.6641 24 14 2 0 0 0 0.11219 1 16581 16581 51.63 13.656 1 1899200 27676 2721 18420 18427 27308 27308 0.05741777651417124 LLSPHNPAL 9 Unmodified _LLSPHNPAL_ 0 0 0 MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant;ENSG00000112996|ENST00000507110|MRPS30 MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25360107421875 2 481.276909 960.539266 0.2237 0.00010766 0.46101 0.00022187 0.68471 0.00032953 481.27699646858287 85.042 0.65925 81.133 80.734 81.393 -3.9093 26 18 2 0 0 0 0.11219 2 16189 16139;16189 51.63 7.7715 1 1728200 27677 2721 18420 18427 27309;27310 27310 0.05741777651417124 LLSPHNPAL 9 Unmodified _LLSPHNPAL_ 0 0 0 MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant;ENSG00000112996|ENST00000507110|MRPS30 MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2541198730469 2 481.276909 960.539266 -0.065702 -3.1621E-05 0.91729 0.00044147 0.85159 0.00040985 481.27737549910836 84.809 0.59238 81.098 80.802 81.394 -3.7117 27 16 2 0 0 0 0.063365 2 16218 16215;16218 66.457 32.055 1 2022100 27678 2721 18420 18427 27311;27312 27312 0.05741777651417124 LLSQWSAH 8 Unmodified _LLSQWSAH_ 0 0 0 KBTBD2-CYFIP1|1|fusion;ENSG00000273749|ENST00000617928|CYFIP1 KBTBD2-CYFIP1|1|fusion KBTBD2-CYFIP1|1|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.5323486328125 3 314.499498 940.476666 NaN NaN NaN NaN NaN NaN NaN 24.842 1 24.842 24.342 25.342 0 0 0 0 0.23782 1 4289 4289 0.12286 0.11459 1 27679 8012 18421 18428 27313 27313 0.0040463158322836534 LLSRDLIM 8 Unmodified _LLSRDLIM_ 0 0 0 ENSG00000104312|ENST00000220751|RIPK2;nc|ENSG00000104312|O43353-2|RIPK2;ENST00000522965.1_1_8:90770176-90802641:+|nuORF ENSG00000104312|ENST00000220751|RIPK2 ENSG00000104312|ENST00000220751|RIPK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76837158203125 2 480.78097 959.547388 0.54824 0.00026358 -0.47818 -0.0002299 0.070067 3.3687E-05 480.7807116693483 111.63 0.9431 107.4 106.97 107.91 -4.2289 69 26 3 0 0 0 0.56049 1 21433 21433 24.674 0 1 11052000 27680 2226 18422 18429 27314 27314 0.06599588576534643 LLSSDDCP 8 Unmodified _LLSSDDCP_ 0 0 0 REV__ENSG00000115020|ENST00000264380|PIKFYVE REV__ENSG00000115020|ENST00000264380|PIKFYVE MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2152099609375 2 425.186568 848.358584 0.058641 2.4933E-05 3.1501 0.0013394 3.2087 0.0013643 425.18979522224487 68.395 1.4859 65.005 64.075 65.561 -3.3903 89 42 4 0 0 0 0.88214 1 12756 12756 0.30703 0 1 3821200 + 27681 15396 18423 18430 27315 27315 -0.07166108787600933 LLSSEKHLQP 10 Unmodified _LLSSEKHLQP_ 0 0 0 nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;TACC2|p.E1974Rfs*22|1|0.37|ENSG00000138162|chr10:122195118-122195119|-/C|frameshift_variant;TACC2|p.V2229Cfs*22|1|0.07|ENSG00000138162|chr10:122211108-122211109|-/A|frameshift_variant;TACC2|p.E1303Gfs*11|1|0.2|ENSG00000138162|chr10:122086403-122086404|-/G|frameshift_variant nc|ENSG00000138162|O95359-3|TACC2 nc|ENSG00000138162|O95359-3|TACC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3253784179688 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 168.64 1 163.77 163.27 164.27 -4.873 0 0 0 0.22588 1 33254 33254 13.042 2.243 1 27682 4158 18424 18431 27316 27316 0.06533086051808823 LLSSHVRGV 9 Unmodified _LLSSHVRGV_ 0 0 0 ENST00000535126.1_1_11:64084857-64084977:-|nuORF;nc|ENSG00000173113|Q9UI30-2|TRMT112;ENSG00000173113|ENST00000544844|TRMT112 ENST00000535126.1_1_11:64084857-64084977:-|nuORF ENST00000535126.1_1_11:64084857-64084977:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.5335388183594 3 323.194298 966.561064 -0.27662 -8.9403E-05 0.71604 0.00023142 0.43941 0.00014202 323.1944426474647 41.425 0.5248 41.425 41.164 41.689 0 32 14 3 0 0 0 0.069179 1 7746 7746 43.982 29.025 1 2320600 27683 6266 18425 18432 27317 27317 0.07644582400007494 LLSSHVRGV 9 Unmodified _LLSSHVRGV_ 0 0 0 ENST00000535126.1_1_11:64084857-64084977:-|nuORF;nc|ENSG00000173113|Q9UI30-2|TRMT112;ENSG00000173113|ENST00000544844|TRMT112 ENST00000535126.1_1_11:64084857-64084977:-|nuORF ENST00000535126.1_1_11:64084857-64084977:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 323.194298 966.561064 -0.33332 -0.00010773 0.44761 0.00014467 0.11429 3.6938E-05 323.1944151481718 44.078 0.58862 41.288 41.017 41.605 -2.79 -0.066856 -0.00016849 NaN 43.982 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4328000 27684 6266 18425 18432 0.07644582400007494 LLSSHVRGV 9 Unmodified _LLSSHVRGV_ 0 0 0 ENST00000535126.1_1_11:64084857-64084977:-|nuORF;nc|ENSG00000173113|Q9UI30-2|TRMT112;ENSG00000173113|ENST00000544844|TRMT112 ENST00000535126.1_1_11:64084857-64084977:-|nuORF ENST00000535126.1_1_11:64084857-64084977:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 323.194298 966.561064 -0.033334 -1.0773E-05 0.25424 8.217E-05 0.22091 7.1397E-05 323.19434400768324 44.129 0.58666 41.363 41.042 41.629 -2.7661 0.0083078 -0.00035598 NaN 43.982 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4138500 27685 6266 18425 18432 0.07644582400007494 LLSSHVRGV 9 Unmodified _LLSSHVRGV_ 0 0 0 ENST00000535126.1_1_11:64084857-64084977:-|nuORF;nc|ENSG00000173113|Q9UI30-2|TRMT112;ENSG00000173113|ENST00000544844|TRMT112 ENST00000535126.1_1_11:64084857-64084977:-|nuORF ENST00000535126.1_1_11:64084857-64084977:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 323.194298 966.561064 -0.75575 -0.00024425 1.0435 0.00033727 0.2878 9.3014E-05 323.1946035694471 44.09 0.59342 41.343 41.045 41.638 -2.7475 -0.012113 0.00040931 NaN 43.982 41 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3355200 27686 6266 18425 18432 0.07644582400007494 LLSSKEQL 8 Unmodified _LLSSKEQL_ 0 0 0 REV__nc|ENSG00000022556|Q9NX02-4|NLRP2 REV__nc|ENSG00000022556|Q9NX02-4|NLRP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23089599609375 2 459.26875 916.522947 -0.083118 -3.8174E-05 0.71045 0.00032629 0.62733 0.00028811 459.2688703201059 80.278 1.2977 76.439 76.035 77.332 -3.8392 78 36 4 0 0 0 0.66265 1 15396 15396 18.135 0 1 14936000 + 27687 13989 18426 18433 27318 27318 0.06134651694674176 LLSSPQHH 8 Unmodified _LLSSPQHH_ 0 0 0 ENST00000306353.7_2_2:85829070-85829145:-|nuORF ENST00000306353.7_2_2:85829070-85829145:-|nuORF ENST00000306353.7_2_2:85829070-85829145:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.9003601074219 3 306.831248 917.471915 -0.50264 -0.00015423 0.50293 0.00015431 0.00028413 8.7181E-08 306.8313442043563 20.678 0.4624 20.678 20.423 20.885 0 22 12 3 0 0 0 1.0244 1 3413 3413 0.45834 0 1 1443700 27688 8608 18427 18434 27319 27319 0.0098774744047887 LLSSPQHH 8 Unmodified _LLSSPQHH_ 0 0 0 ENST00000306353.7_2_2:85829070-85829145:-|nuORF ENST00000306353.7_2_2:85829070-85829145:-|nuORF ENST00000306353.7_2_2:85829070-85829145:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 306.831248 917.471915 -1.2771 -0.00039185 1.1686 0.00035856 -0.10849 -3.3289E-05 306.8315202078529 22.306 0.42053 20.517 20.293 20.713 -1.7886 -0.080652 0.00032186 NaN 0.45834 25 11 4 NaN NaN NaN NaN 0 NaN NaN 0 1413300 27689 8608 18427 18434 0.0098774744047887 LLSSPWESY 9 Unmodified _LLSSPWESY_ 0 0 0 ENST00000584273.1_1_2:119591425-119591963:-|nuORF ENST00000584273.1_1_2:119591425-119591963:-|nuORF ENST00000584273.1_1_2:119591425-119591963:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2648315429688 2 541.263665 1080.51278 0.032014 1.7328E-05 0.51422 0.00027833 0.54624 0.00029566 541.2639080887968 79.206 0.83813 75.53 74.851 75.69 -3.676 37 23 2 0 0 0 0.60805 1 15012 15012 12.532 0 1 1639700 27690 11522 18428 18435 27320 27320 -0.02425956030560883 LLSSREKPL 9 Unmodified _LLSSREKPL_ 0 0 0 REV__NUP214|p.F123Lfs*23|1|0.39|ENSG00000126883|chr9:131128453-131128453|T/-|frameshift_variant REV__NUP214|p.F123Lfs*23|1|0.39|ENSG00000126883|chr9:131128453-131128453|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2705688476562 2 521.816399 1041.61824 0.6021 0.00031419 -0.89078 -0.00046482 -0.28868 -0.00015064 521.8162542687066 113.89 0.48345 109.59 109.35 109.83 -4.2994 17 13 2 0 0 0 0.71527 1 21978 21978 13.906 0 1 1108000 + 27691 15871 18429 18436 27321 27321 0.09910004885705348 LLSSWRSL 8 Unmodified _LLSSWRSL_ 0 0 0 REV__ENST00000326407.10_1_2:231743538-231743664:+|nuORF REV__ENST00000326407.10_1_2:231743538-231743664:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7779846191406 2 481.276909 960.539266 0.0050036 2.4081E-06 0.71429 0.00034377 0.7193 0.00034618 481.277191849025 84.645 0.5212 80.98 80.744 81.265 -3.6641 24 14 2 0 0 0 8448 1 16519 16519 6.1918 0 1 1899200 + 27692 20581 18430 18437 27322 27322 0.05741777651417124 LLSTASGA 8 Unmodified _LLSTASGA_ 0 0 0 ENST00000571594.1_1_17:80687806-80688040:+|nuORF ENST00000571594.1_1_17:80687806-80688040:+|nuORF ENST00000571594.1_1_17:80687806-80688040:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 89.722 1 89.722 89.222 90.222 0 0 0 0 0.21486 1 17524 17524 2.5775 0 1 27693 11423 18431 18438 27323 27323 0.015661625349594033 LLSTLGTVPG 10 Unmodified _LLSTLGTVPG_ 0 0 0 ENST00000520635.5_1_8:82644498-82644591:-|nuORF ENST00000520635.5_1_8:82644498-82644591:-|nuORF ENST00000520635.5_1_8:82644498-82644591:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7423095703125 2 479.2844 956.554247 -0.20155 -9.66E-05 0.17411 8.3448E-05 -0.027441 -1.3152E-05 479.2844867954521 90.098 0.58971 90.098 89.741 90.331 0 26 16 2 0 0 0 0.54036 1 17592 17592 24.021 11.78 1 2317500 27694 10837 18432 18439 27324 27324 0.07423224728779587 LLSTLGTVPG 10 Unmodified _LLSTLGTVPG_ 0 0 0 ENST00000520635.5_1_8:82644498-82644591:-|nuORF ENST00000520635.5_1_8:82644498-82644591:-|nuORF ENST00000520635.5_1_8:82644498-82644591:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7294921875 2 479.2844 956.554247 0.025195 1.2075E-05 0.069653 3.3383E-05 0.094847 4.5459E-05 479.2844787535503 93.795 0.65582 89.804 89.521 90.176 -3.9907 37 18 3 0 0 0 0.83242 1 18433 18433 14.838 13.356 1 3244300 27695 10837 18432 18439 27325 27325 0.07423224728779587 LLSTLGTVPG 10 Unmodified _LLSTLGTVPG_ 0 0 0 ENST00000520635.5_1_8:82644498-82644591:-|nuORF ENST00000520635.5_1_8:82644498-82644591:-|nuORF ENST00000520635.5_1_8:82644498-82644591:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7229309082031 2 479.2844 956.554247 0.033406 1.6011E-05 0.062704 3.0053E-05 0.096109 4.6064E-05 479.28442754954995 93.783 0.62527 89.939 89.535 90.16 -3.844 28 17 2 0 0 0 0.54036 1 18014 18014 37.974 13.953 1 3604700 27696 10837 18432 18439 27326 27326 0.07423224728779587 LLSTLGTVPG 10 Unmodified _LLSTLGTVPG_ 0 0 0 ENST00000520635.5_1_8:82644498-82644591:-|nuORF ENST00000520635.5_1_8:82644498-82644591:-|nuORF ENST00000520635.5_1_8:82644498-82644591:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.2844 956.554247 0.20927 0.0001003 0.19636 9.4112E-05 0.40563 0.00019441 479.2843915385081 94.051 0.6235 89.907 89.55 90.173 -4.1435 -0.029989 7.3032E-05 NaN 24.021 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3686000 27697 10837 18432 18439 0.07423224728779587 LLSTMIKSL 9 Unmodified _LLSTMIKSL_ 0 0 0 REV__KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant REV__KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 503.3596496582031 2 503.304278 1004.594 NaN NaN NaN NaN NaN NaN NaN 123.25 1 123.25 122.75 123.75 0 0 0 0 0.19684 1 24294 24294 0.12781 0 1 + 27698 18832 18433 18440 27327 27327 0.09189028407809019 LLSVFERKVGL 11 Unmodified _LLSVFERKVGL_ 0 0 0 REV__ENST00000313478.11_1_15:50884770-50885889:-|nuORF REV__ENST00000313478.11_1_15:50884770-50885889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7665405273438 2 630.887355 1259.76016 NaN NaN NaN NaN NaN NaN NaN 145.56 1 140.44 139.94 140.94 -5.1108 0 0 0 0.22632 1 28129 28129 3.0723 2.2273 1 + 27699 20504 18434 18441 27328 27328 0.1406679790804901 LLSVLLYLLVK 11 Unmodified _LLSVLLYLLVK_ 0 0 0 ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25543212890625 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 31.53 1 31.53 31.03 32.03 0 0 0 0 0.23698 1 5698 5698 0.45452 0.29519 1 27700 2283 18435 18442 27329 27329 0.21658900267107128 LLSWKRVR 8 Unmodified _LLSWKRVR_ 0 0 0 REV__ENST00000264235.12_2_3:119543748-119543829:-|nuORF REV__ENST00000264235.12_2_3:119543748-119543829:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.20196533203125 3 353.225821 1056.65563 -0.61194 -0.00021615 -0.41846 -0.00014781 -1.0304 -0.00036396 353.22561147878974 26.768 0.34469 24.846 24.675 25.02 -1.9222 16 9 2 0 0 0 8448 1 4421 4421 0 0 1 424230 + 27701 20229 18436 18443 27330 27330 0.12957140941989564 LLSYNVRP 8 Unmodified _LLSYNVRP_ 0 0 0 REV__ENSG00000198951|ENST00000396398|NAGA REV__ENSG00000198951|ENST00000396398|NAGA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24176025390625 2 481.276909 960.539266 0.0050036 2.4081E-06 0.71429 0.00034377 0.7193 0.00034618 481.277191849025 84.645 0.5212 80.98 80.744 81.265 -3.6641 24 14 2 0 0 0 8448 1 16548 16548 1.7423 0 1 1899200 + 27702 19488 18437 18444 27331 27331 0.05741777651417124 LLSYQASGNL 10 Unmodified _LLSYQASGNL_ 0 0 0 ENST00000443660.5_1_22:19420361-19420817:+|nuORF ENST00000443660.5_1_22:19420361-19420817:+|nuORF ENST00000443660.5_1_22:19420361-19420817:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2832641601562 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 116.67 1 112.31 111.81 112.81 -4.3585 0 0 0 0.18733 1 22459 22459 30.637 0.41173 1 27703 9914 18438 18445 27332 27332 0.020531352350417365 LLTEFRSL 8 Unmodified _LLTEFRSL_ 0 0 0 ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2527770996094 2 489.784567 977.554582 0.15844 7.7602E-05 0.41457 0.00020305 0.57301 0.00028065 489.78389458780936 134.74 0.14075 129.86 129.75 129.89 -4.8726 5 3 2 0 0 0 0.74718 1 25862 25862 18.135 0 1 861050 27704 2227 18439 18446 27333 27333 0.06490644448626881 LLTFIFHHCN 10 Unmodified _LLTFIFHHCN_ 0 0 0 SLC39A10|p.R238Gfs*84|1|0.35|ENSG00000196950|chr2:195680745-195680745|A/-|frameshift_variant;ENSG00000196950|ENST00000359634|SLC39A10 SLC39A10|p.R238Gfs*84|1|0.35|ENSG00000196950|chr2:195680745-195680745|A/-|frameshift_variant SLC39A10|p.R238Gfs*84|1|0.35|ENSG00000196950|chr2:195680745-195680745|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.777587890625 2 622.815876 1243.6172 NaN NaN NaN NaN NaN NaN NaN 9.741 1 9.741 9.241 10.241 0 0 0 0 0.22588 1 1160 1160 0 0 1 27705 7319 18440 18447 27334 27334 0.005134672451958977 LLTFLVTL 8 Unmodified _LLTFLVTL_ 0 0 0 REV__ENSG00000158669|ENST00000396987|GPAT4 REV__ENSG00000158669|ENST00000396987|GPAT4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.201416015625 3 307.200278 918.579005 NaN NaN NaN NaN NaN NaN NaN 142.79 1 138.14 137.64 138.64 -4.656 0 0 0 0.21486 1 28228 28228 0.40072 0 1 + 27706 17341 18441 18448 27335 27335 0.11645904602153223 LLTFSTFSAG 10 Unmodified _LLTFSTFSAG_ 0 0 0 ENST00000460900.1_1_14:105954779-105954845:+|nuORF ENST00000460900.1_1_14:105954779-105954845:+|nuORF ENST00000460900.1_1_14:105954779-105954845:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2705688476562 2 522.274032 1042.53351 -0.083408 -4.3562E-05 -1.4418 -0.00075304 -1.5252 -0.0007966 522.7764292674909 125.43 0.14293 120.84 120.76 120.9 -4.5984 5 3 2 0 0 0 0.35262 1 24733 24733 0.51642 0.45255 1 1402500 27707 10062 18442 18449 27336 27336 0.013946343490943036 LLTFYVVLC 9 Unmodified _LLTFYVVLC_ 0 0 0 ENSG00000203730|ENST00000367565|TEDDM1 ENSG00000203730|ENST00000367565|TEDDM1 ENSG00000203730|ENST00000367565|TEDDM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.56011962890625 3 357.536673 1069.58819 NaN NaN NaN NaN NaN NaN NaN 33.785 1 31.569 31.069 32.069 -2.2158 0 0 0 0.23508 1 5901 5901 11.495 2.5185 1 27708 7543 18443 18450 27337 27337 0.056179298961751556 LLTHKRQRRGE 11 Unmodified _LLTHKRQRRGE_ 0 0 0 REV__HSD17B10|p.A256Pfs*?|1|0.28|ENSG00000072506|chrX:53431424-53431424|C/-|frameshift_variant REV__HSD17B10|p.A256Pfs*?|1|0.28|ENSG00000072506|chrX:53431424-53431424|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2519836425781 3 465.276014 1392.80621 NaN NaN NaN NaN NaN NaN NaN 100.58 1 96.28 95.78 96.78 -4.297 0 0 0 0.22632 1 19239 19239 0.172 0 1 + 27709 23640 18444 18451 27338 27338 0.12552255862829043 LLTHPHPD 8 Unmodified _LLTHPHPD_ 0 0 0 ENST00000595800.1_1_19:7712602-7712650:+|nuORF ENST00000595800.1_1_19:7712602-7712650:+|nuORF ENST00000595800.1_1_19:7712602-7712650:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2450866699219 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 107.55 1 107.55 107.05 108.05 0 0 0 0 0.19492 1 21147 21147 26.341 11.76 1 27710 11662 18445 18452 27339 27339 0.009566315832330474 LLTIKIFTLS 10 Unmodified _LLTIKIFTLS_ 0 0 0 OR8K3|p.V159L|1|0.29|ENSG00000280314|chr11:56318781-56318781|G/C|missense_variant OR8K3|p.V159L|1|0.29|ENSG00000280314|chr11:56318781-56318781|G/C|missense_variant OR8K3|p.V159L|1|0.29|ENSG00000280314|chr11:56318781-56318781|G/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 574.8116455078125 2 574.8681 1147.72165 0.47922 0.00027549 2.6563 0.001527 3.1355 0.0018025 574.8686010396435 163.2 0.18048 158.02 157.91 158.09 -5.1878 6 4 2 0 0 0 1.1335 1 31729 31729 1.9064 0.57684 1 6995400 27711 12737 18446 18453 27340 27340 0.15369492273521246 LLTIKQKVT 9 Unmodified _LLTIKQKVT_ 0 0 0 REV__nc|ENSG00000082512|O00463-3|TRAF5 REV__nc|ENSG00000082512|O00463-3|TRAF5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27734375 2 522.344792 1042.67503 NaN NaN NaN NaN NaN NaN NaN 118.8 1 114.19 113.69 114.69 -4.6106 0 0 0 0.23508 1 22795 22795 4.756 0 1 + 27712 14439 18447 18454 27341 27341 0.15540052442224805 LLTKKVKL 8 Unmodified _LLTKKVKL_ 0 0 0 REV__tr|U7SEA4|U7SEA4_FUSNUHemolysinactivation/secretionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02368PE=4SV=1 REV__tr|U7SEA4|U7SEA4_FUSNUHemolysinactivation/secretionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02368PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 472.01739501953125 2 471.839146 941.663738 NaN NaN NaN NaN NaN NaN NaN 133.6 1 128.73 128.23 129.23 -4.8726 0 0 0 0.23294 1 25672 25672 0.12286 0 1 + 27713 24843 18448 18455 27342 27342 0.19057275138743535 LLTKLKKL 8 Unmodified _LLTKLKKL_ 0 0 0 REV__ENST00000491074.5_1_2:183605037-183619453:+|nuORF REV__ENST00000491074.5_1_2:183605037-183619453:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7384033203125 2 478.846971 955.679388 NaN NaN NaN NaN NaN NaN NaN 155.53 1 155.53 155.03 156.03 0 0 0 0 0.2396 1 31178 31178 0.12286 0 1 + 27714 13721 18449 18456 27343 27343 0.1997756165580995 LLTLDEPD 8 Unmodified _LLTLDEPD_ 0 0 0 nc|ENSG00000270231|Q3BBV2|NBPF8 nc|ENSG00000270231|Q3BBV2|NBPF8 nc|ENSG00000270231|Q3BBV2|NBPF8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23870849609375 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 75.004 1 75.004 74.504 75.504 0 0 0 0 0.21486 1 14565 14565 10.183 0 1 27715 12639 18450 18457 27344 27344 -0.0009733381323258072 LLTLKTEVP 9 Unmodified _LLTLKTEVP_ 0 0 0 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.28326416015625 2 507.3157 1012.61685 0.21406 0.00010859 -0.3657 -0.00018553 -0.15165 -7.6932E-05 507.315482324268 119.56 0.80802 115.04 114.59 115.39 -4.5221 49 22 3 0 0 0 0.47976 1 23512 23512 0.40827 0.40827 1 5213300 27716 2804 18451 18458 27345 27345 0.11104370796954299 LLTLKVKRPG 10 Unmodified _LLTLKVKRPG_ 0 0 0 REV__ENSG00000183808|ENST00000520560|RBM12B REV__ENSG00000183808|ENST00000520560|RBM12B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 562.6732177734375 2 562.879333 1123.74411 NaN NaN NaN NaN NaN NaN NaN 68.836 1 65.3 64.8 65.8 -3.5362 0 0 0 2.8426 1 12948 12948 0.043787 0 1 + 27717 18867 18452 18459 27346 27346 0.18719136461777452 LLTLVCQLY 9 Unmodified _LLTLVCQLY_ 0 0 0 ENST00000600463.1_1_19:18288394-18288718:+|nuORF;ENSG00000216490|ENST00000407280|IFI30 ENST00000600463.1_1_19:18288394-18288718:+|nuORF ENST00000600463.1_1_19:18288394-18288718:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2662353515625 2 533.304278 1064.594 0.49538 0.00026419 0.6097 0.00032515 1.1051 0.00058934 533.3048870366041 150.2 0.17152 145.01 144.85 145.02 -5.1994 7 4 3 0 0 0 0.65439 1 29087 29087 9.3474 0 1 1428500 27718 7755 18453 18460 27347 27347 0.06429028407842452 LLTLYLNL 8 Unmodified _LLTLYLNL_ 0 0 0 ENST00000558902.5_1_15:52548900-52571163:-|nuORF ENST00000558902.5_1_15:52548900-52571163:-|nuORF ENST00000558902.5_1_15:52548900-52571163:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2421875 2 481.799686 961.584819 0.23814 0.00011474 0.21341 0.00010282 0.45155 0.00021755 481.7996669367269 64.53 0.46017 61.072 60.837 61.297 -3.4581 20 12 2 0 0 0 0.88214 1 12082 12082 0.62683 0 1 977940 27719 11270 18454 18461 27348 27348 0.10249003113801791 LLTLYLNL 8 Unmodified _LLTLYLNL_ 0 0 0 ENST00000558902.5_1_15:52548900-52571163:-|nuORF ENST00000558902.5_1_15:52548900-52571163:-|nuORF ENST00000558902.5_1_15:52548900-52571163:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24371337890625 2 481.799686 961.584819 0.2062 9.9347E-05 0.11872 5.7202E-05 0.32493 0.00015655 481.7996719853407 64.284 0.49467 61.027 60.813 61.308 -3.2567 19 13 2 0 0 0 0.97994 1 12102 12102 15.768 0 1 1028200 27720 11270 18454 18461 27349 27349 0.10249003113801791 LLTLYSIKFF 10 Unmodified _LLTLYSIKFF_ 0 0 0 REV__nc|ENSG00000237541|P01909|HLA-DQA1 REV__nc|ENSG00000237541|P01909|HLA-DQA1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7761840820312 2 622.8681 1243.72165 NaN NaN NaN NaN NaN NaN NaN 82.321 1 78.764 78.264 79.264 -3.557 0 0 0 0.22588 1 16089 16089 6.7232 0.51738 1 + 27721 24284 18455 18462 27350 27350 0.10953492273529264 LLTNAMRT 8 Unmodified _LLTNAMRT_ 0 0 0 REV__nc|ENSG00000109956|Q9P2W7-2|B3GAT1 REV__nc|ENSG00000109956|Q9P2W7-2|B3GAT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2274475097656 2 460.25512 918.495686 NaN NaN NaN NaN NaN NaN NaN 88.004 1 84.254 83.754 84.754 -3.7501 0 0 0 0.21486 1 16840 16840 9.3474 0 1 + 27722 15183 18456 18463 27351 27351 0.03317844882644749 LLTPDELDK 9 Unmodified _LLTPDELDK_ 0 0 0 NBPF19|p.P136L|1|0.36|ENSG00000271383|chr1:149479008-149479008|C/T|missense_variant NBPF19|p.P136L|1|0.36|ENSG00000271383|chr1:149479008-149479008|C/T|missense_variant NBPF19|p.P136L|1|0.36|ENSG00000271383|chr1:149479008-149479008|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.259521484375 2 522.284597 1042.55464 NaN NaN NaN NaN NaN NaN NaN 125.87 1 121.27 120.77 121.77 -4.5984 0 0 0 0.20628 1 24814 24814 21.747 4.8044 1 27723 12201 18457 18464 27352 27352 0.03506599657953302 LLTPRRRRRRL 11 Unmodified _LLTPRRRRRRL_ 0 0 0 REV__nc|ENSG00000100852|Q13017-3|ARHGAP5 REV__nc|ENSG00000100852|Q13017-3|ARHGAP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 746.8741455078125 2 746.992209 1491.96987 NaN NaN NaN NaN NaN NaN NaN 167.93 1 167.93 167.43 168.43 0 0 0 0 0.23698 1 34348 34348 0.35063 0.11479 1 + 27724 23972 18458 18465 27353 27353 0.24355898424369116 LLTQAVIAT 9 Unmodified _LLTQAVIAT_ 0 0 0 REV__tr|U7SMC5|U7SMC5_FUSNUUDP-3-O-[3-hydroxymyristoyl]glucosamineN-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01954PE=4SV=1 REV__tr|U7SMC5|U7SMC5_FUSNUUDP-3-O-[3-hydroxymyristoyl]glucosamineN-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01954PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2499694824219 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 77.763 1 74.104 73.604 74.604 -3.6588 0 0 0 0.19721 1 14810 14810 24.021 0.87215 1 + 27725 24965 18459 18466 27354 27354 0.09219528591370363 LLTQNLLV 8 Unmodified _LLTQNLLV_ 0 0 0 ENST00000452533.6_1_12:32896368-32896542:+|nuORF ENST00000452533.6_1_12:32896368-32896542:+|nuORF ENST00000452533.6_1_12:32896368-32896542:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 305.0519714355469 3 305.195416 912.564418 NaN NaN NaN NaN NaN NaN NaN 4.3592 1 3.733 3.233 4.233 -0.62626 0 0 0 0.21486 1 70 70 0.45834 0 1 27726 9993 18460 18467 27355 27355 0.104638324540133 LLTSCRVE 8 Unmodified _LLTSCRVE_ 0 0 0 REV__nc|ENSG00000171992|Q8N3V7|SYNPO REV__nc|ENSG00000171992|Q8N3V7|SYNPO MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2388000488281 2 460.747127 919.479702 0.36841 0.00016975 2.9912 0.0013782 3.3596 0.0015479 460.74955782200965 73.308 0.17313 69.77 69.712 69.886 -3.5385 5 4 2 0 0 0 1.0147 1 13928 13928 0.6015 0 1 451750 + 27727 24170 18461 18468 27356 27356 0.01674138645739731 LLTSPGVIEH 10 Unmodified _LLTSPGVIEH_ 0 0 0 ENST00000449500.1_1_20:62259545-62259701:+|nuORF ENST00000449500.1_1_20:62259545-62259701:+|nuORF ENST00000449500.1_1_20:62259545-62259701:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.284423828125 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 130.56 1 130.56 130.06 131.06 0 0 0 0 0.22576 1 25807 25807 14.838 2.3067 1 27728 9966 18462 18469 27357 27357 0.056900121317767116 LLTSQPHSP 9 Unmodified _LLTSQPHSP_ 0 0 0 ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.L1044F|1|0.49|ENSG00000116183|chr1:176699485-176699485|G/C|missense_variant ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2642517089844 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 79.015 1 79.015 78.515 79.515 0 0 0 0 0.19704 1 15376 15376 2.6312 0.88896 1 27729 2913 18463 18470 27358 27358 0.02332883409144415 LLTSRKSR 8 Unmodified _LLTSRKSR_ 0 0 0 REV__ENSG00000149218|ENST00000278505|ENDOD1 REV__ENSG00000149218|ENST00000278505|ENDOD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2533874511719 2 480.801083 959.587613 0.39404 0.00018946 -0.13477 -6.4798E-05 0.25927 0.00012466 480.8008900294023 160.94 1.0892 155.68 155.25 156.33 -5.2527 84 30 4 0 0 0 0.79017 1 31250 31250 4.756 0 1 37787000 + 27730 17002 18464 18471 27359 27359 0.10620271291338668 LLTSVLPTP 9 Unmodified _LLTSVLPTP_ 0 0 0 ENSG00000162944|ENST00000295049|RFTN2;ENST00000494346.1_1_2:198436734-198482697:-|nuORF ENSG00000162944|ENST00000295049|RFTN2 ENSG00000162944|ENST00000295049|RFTN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1675720214844 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 101.51 1 101.51 101.01 102.01 0 0 0 0 0.23508 1 19926 19926 1.0715 0 1 27731 5386 18465 18472 27360 27360 0.09188412734147278 LLTVLERVH 9 Unmodified _LLTVLERVH_ 0 0 0 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015686035156 3 360.557236 1078.64988 -0.38546 -0.00013898 0.42459 0.00015309 0.039137 1.4111E-05 360.5573332654707 89.97 0.62694 89.97 89.632 90.259 0 29 17 2 0 0 0 0.83265 1 17575 17575 14.405 6.7964 1 2800700 27732 6226 18466 18473 27361 27361 0.11369997639690155 LLTVLERVH 9 Unmodified _LLTVLERVH_ 0 0 0 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017517089844 3 360.557236 1078.64988 -0.26349 -9.5003E-05 -0.021583 -7.7819E-06 -0.28507 -0.00010279 360.5571771339178 93.379 0.55072 89.388 89.037 89.588 -3.9907 24 15 2 0 0 0 0.81359 1 18275 18275 16.149 3.9084 1 2586600 27733 6226 18466 18473 27362 27362 0.11369997639690155 LLTVLERVH 9 Unmodified _LLTVLERVH_ 0 0 0 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2013244628906 3 360.557236 1078.64988 0.22491 8.1092E-05 -0.39059 -0.00014083 -0.16568 -5.9736E-05 360.55706673300955 93.52 0.63755 89.377 89.115 89.752 -4.1435 28 18 2 0 0 0 0.81359 1 17870 17870 16.149 3.9084 1 2446500 27734 6226 18466 18473 27363 27363 0.11369997639690155 LLTVLERVH 9 Unmodified _LLTVLERVH_ 0 0 0 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015686035156 3 360.557236 1078.64988 -0.62381 -0.00022492 0.29572 0.00010662 -0.32809 -0.00011829 360.55726750527475 93.417 0.5915 89.573 89.225 89.817 -3.844 33 16 3 0 0 0 0.81359 1 17929 17929 11.495 3.3392 1 2113300 27735 6226 18466 18473 27364 27364 0.11369997639690155 LLTWGGWVL 9 Unmodified _LLTWGGWVL_ 0 0 0 ENST00000497824.5_1_1:156384482-156399170:-|nuORF;ENST00000486517.5_1_1:156384482-156391433:-|nuORF ENST00000497824.5_1_1:156384482-156399170:-|nuORF ENST00000497824.5_1_1:156384482-156399170:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2789916992188 2 522.797478 1043.5804 0.26051 0.00013619 -3.5718 -0.0018673 -3.3113 -0.0017311 522.7953908398149 125.73 0.59222 121.08 120.74 121.33 -4.6495 18 16 2 0 0 0 0.72864 1 24138 24138 11.64 8.359 1 1515900 27736 10456 18467 18474 27365 27365 0.0603553869091229 LLTYIIIN 8 Unmodified _LLTYIIIN_ 0 0 0 REV__ENST00000326925.10_1_3:49060685-49060871:+|nuORF REV__ENST00000326925.10_1_3:49060685-49060871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77020263671875 2 481.799686 961.584819 -0.29907 -0.00014409 0.69234 0.00033357 0.39327 0.00018948 481.7999205351669 60.893 0.45569 60.893 60.662 61.118 0 22 12 2 0 0 0 8448 1 11710 11710 0.12286 0 1 1301200 + 27737 20588 18468 18475 27366 27366 0.1024900311381316 LLVAELTA 8 Unmodified _LLVAELTA_ 0 0 0 ENST00000370620.5_1_X:135749294-135749660:-|nuORF ENST00000370620.5_1_X:135749294-135749660:-|nuORF ENST00000370620.5_1_X:135749294-135749660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2414855957031 2 415.255111 828.49567 NaN NaN NaN NaN NaN NaN NaN 87.872 1 83.876 83.376 84.376 -3.9953 0 0 0 0.21486 1 16735 16735 5.7604 0 1 27738 9142 18469 18476 27367 27367 0.07456168154260467 LLVALSCAPPC 11 Unmodified _LLVALSCAPPC_ 0 0 0 REV__ENST00000422748.5_2_7:134464397-134464469:+|nuORF REV__ENST00000422748.5_2_7:134464397-134464469:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7779541015625 2 543.787938 1085.56132 NaN NaN NaN NaN NaN NaN NaN 157.82 1 152.55 152.05 153.05 -5.2712 0 0 0 0.22862 1 30615 30615 9.3831 0.035688 1 + 27739 21526 18470 18477 27368 27368 0.021964980133361678 LLVDPKKE 8 Unmodified _LLVDPKKE_ 0 0 0 REV__nc|ENSG00000196954|P49662-4|CASP4 REV__nc|ENSG00000196954|P49662-4|CASP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 471.78704833984375 2 471.286943 940.559333 0.57482 0.00027091 0.31654 0.00014918 0.89137 0.00042009 471.2870175734771 102.94 0.65453 98.922 98.589 99.243 -4.0212 32 17 3 0 0 0 8448 1 19769 19769 6.1918 0 1 2378000 + 27740 19291 18471 18478 27369 27369 0.0866752859137705 LLVDWYEQSLI 11 Unmodified _LLVDWYEQSLI_ 0 0 0 REV__tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1 REV__tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24444580078125 3 460.246616 1377.71802 NaN NaN NaN NaN NaN NaN NaN 115.6 1 111.29 110.79 111.79 -4.3136 0 0 0 0.22632 1 22255 22255 0.03141 0 1 + 27741 25012 18472 18479 27370 27370 0.04426777708999907 LLVEGMAW 8 Unmodified _LLVEGMAW_ 0 0 0 REV__nc|ENSG00000164168|Q9NVA4-2|TMEM184C REV__nc|ENSG00000164168|Q9NVA4-2|TMEM184C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2431335449219 2 459.741314 917.468075 -0.11634 -5.3488E-05 0.38638 0.00017763 0.27003 0.00012414 459.7414211923907 84.241 2.1503 80.577 79.741 81.892 -3.6641 112 61 2 0 0 0 8448 1 16497 16497 3.5871 0 1 3560400 + 27742 17656 18473 18480 27371 27371 0.006039416223984517 LLVEGMAW 8 Unmodified _LLVEGMAW_ 0 0 0 REV__nc|ENSG00000164168|Q9NVA4-2|TMEM184C REV__nc|ENSG00000164168|Q9NVA4-2|TMEM184C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24273681640625 2 459.741314 917.468075 -0.022191 -1.0202E-05 0.36103 0.00016598 0.33884 0.00015578 459.741429740106 84.22 2.3722 80.508 79.816 82.188 -3.7117 142 67 3 0 0 0 8448 1 16155 16155 3.5871 3.4642 1 4900000 + 27743 17656 18473 18480 27372 27372 0.006039416223984517 LLVGNQISL 9 Unmodified _LLVGNQISL_ 0 0 0 ENSG00000161798|ENST00000293599|AQP5 ENSG00000161798|ENST00000293599|AQP5 ENSG00000161798|ENST00000293599|AQP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74334716796875 2 478.792392 955.570232 0.33305 0.00015946 -0.080507 -3.8546E-05 0.25254 0.00012091 478.7920378545689 121.37 0.3932 116.84 116.5 116.89 -4.5305 12 10 2 0 0 0 0.73268 1 23307 23307 13.042 2.9685 1 589330 27744 5300 18474 18481 27373 27373 0.09066930965661868 LLVGVMAG 8 Unmodified _LLVGVMAG_ 0 0 0 ENST00000479352.5_1_3:124802736-124844777:-|nuORF ENST00000479352.5_1_3:124802736-124844777:-|nuORF ENST00000479352.5_1_3:124802736-124844777:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 380.22265625 2 380.2253 758.436046 NaN NaN NaN NaN NaN NaN NaN 72.144 1 68.606 68.106 69.106 -3.5385 0 0 0 0.23294 1 13686 13686 0.12286 0 1 27745 10339 18475 18482 27374 27374 0.04716573939253976 LLVKLLALRL 10 Unmodified _LLVKLLALRL_ 0 0 0 REV__FOCAD|p.D482Vfs*9|1|0.04|ENSG00000188352|chr9:20789597-20789598|-/TC|frameshift_variant REV__FOCAD|p.D482Vfs*9|1|0.04|ENSG00000188352|chr9:20789597-20789598|-/TC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3201904296875 2 576.415552 1150.81655 NaN NaN NaN NaN NaN NaN NaN 139.29 1 139.29 138.79 139.79 0 0 0 0 2.8426 1 27681 27681 0.13989 0.13989 1 + 27746 19144 18476 18483 27375 27375 0.24717470535347275 LLVKLLFIK 9 Unmodified _LLVKLLFIK_ 0 0 0 REV__nc|ENSG00000078304|Q13362-2|PPP2R5C;REV__ENST00000495716.1_1_3:52407964-52408519:+|nuORF REV__ENST00000495716.1_1_3:52407964-52408519:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78466796875 2 543.886096 1085.75764 0.34331 0.00018672 -1.5076 -0.00081994 -1.1643 -0.00063322 544.3864296479304 161.53 0.17056 161.53 161.41 161.59 0 5 4 2 0 0 0 0.63929 1 32430 32430 0.0033805 0 1 1554700 + 27747 14378;22382 18477 18484 27376 27376 0.21818994241016298 LLVKLVVMAT 10 Unmodified _LLVKLVVMAT_ 0 0 0 COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7890014648438 2 543.851396 1085.68824 NaN NaN NaN NaN NaN NaN NaN 9.4155 1 8.6213 8.1213 9.1213 -0.79424 0 0 0 0.22588 1 1085 1085 0.40072 0 1 27748 621 18478 18485 27377 27377 0.1488216722996185 LLVKLVVPV 9 Unmodified _LLVKLVVPV_ 0 0 0 COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2698974609375 2 490.349346 978.684139 NaN NaN NaN NaN NaN NaN NaN 150.88 1 145.65 145.15 146.15 -5.2365 0 0 0 0.19624 1 29241 29241 0.073264 0 1 27749 620 18479 18486 27378 27378 0.19394445798570814 LLVKPVIRK 9 Unmodified _LLVKPVIRK_ 0 0 0 ENST00000492084.5_1_6:31670780-31670846:-|nuORF ENST00000492084.5_1_6:31670780-31670846:-|nuORF ENST00000492084.5_1_6:31670780-31670846:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2630004882812 2 533.378969 1064.74339 NaN NaN NaN NaN NaN NaN NaN 132.11 1 127.26 126.76 127.76 -4.8527 0 0 0 0.23508 1 25376 25376 2.3027 0 1 27750 10535 18480 18487 27379 27379 0.21360341812737715 LLVLNPIKR 9 Unmodified _LLVLNPIKR_ 0 0 0 nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1;nc|ENSG00000116141|Q9P0L2-2|MARK1 nc|ENSG00000116141|Q9P0L2-3|MARK1 nc|ENSG00000116141|Q9P0L2-3|MARK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2705078125 2 533.360776 1064.707 0.18024 9.6135E-05 3.6513 0.0019474 3.8315 0.0020436 533.3649765101773 149.32 0.13904 144.59 144.52 144.66 -4.7323 5 3 2 0 0 0 0.63929 1 29669 29669 0.0033805 0 1 2127000 27751 2910 18481 18488 27380 27380 0.17723464916048215 LLVLPGLKVL 10 Unmodified _LLVLPGLKVL_ 0 0 0 ENST00000225964.9_1_17:48265286-48266811:-|nuORF;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant ENST00000225964.9_1_17:48265286-48266811:-|nuORF ENST00000225964.9_1_17:48265286-48266811:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2774047851562 2 532.875728 1063.7369 0.44178 0.00023541 2.5708 0.0013699 3.0126 0.0016053 532.8784358663924 154.18 0.20476 148.96 148.91 149.11 -5.2209 6 5 2 0 0 0 0.91149 1 29880 29880 4.3292 0 1 524280 27752 619 18482 18489 27381 27381 0.20758403861373154 LLVLVLLKLK 10 Unmodified _LLVLVLLKLK_ 0 0 0 REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3224487304688 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 121.75 1 121.75 121.25 122.25 0 0 0 0 2.8426 1 23999 23999 0 0 1 + 27753 20069 18483 18490 27382 27382 0.27231525337901985 LLVLVLLKLK 10 Unmodified _LLVLVLLKLK_ 0 0 0 REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3279418945312 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 123.44 1 123.44 122.94 123.94 0 0 0 0 2.8426 1 24332 24332 0 0 1 + 27754 20069 18483 18490 27383 27383 0.27231525337901985 LLVLVLLKLK 10 Unmodified _LLVLVLLKLK_ 0 0 0 REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3279418945312 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 123.45 1 123.45 122.95 123.95 0 0 0 0 0.22588 1 24334 24334 0 0 1 + 27755 20069 18483 18490 27384 27384 0.27231525337901985 LLVLVLLKLK 10 Unmodified _LLVLVLLKLK_ 0 0 0 REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3285522460938 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 159.88 1 159.88 159.38 160.38 0 0 0 0 2.8426 1 32101 32101 0 0 1 + 27756 20069 18483 18490 27385 27385 0.27231525337901985 LLVLVLLKLK 10 Unmodified _LLVLVLLKLK_ 0 0 0 REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3314819335938 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 68.439 1 65.259 64.759 65.759 -3.1796 0 0 0 2.8426 1 13293 13293 0 0 1 + 27757 20069 18483 18490 27386 27386 0.27231525337901985 LLVLVLLKLK 10 Unmodified _LLVLVLLKLK_ 0 0 0 REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3314819335938 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 68.446 1 65.267 64.767 65.767 -3.1796 0 0 0 0.22588 1 13294 13294 0 0 1 + 27758 20069 18483 18490 27387 27387 0.27231525337901985 LLVLVLLKLK 10 Unmodified _LLVLVLLKLK_ 0 0 0 REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3341064453125 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 141.32 1 136.67 136.17 137.17 -4.6493 0 0 0 0.22588 1 27911 27911 0 0 1 + 27759 20069 18483 18490 27388 27388 0.27231525337901985 LLVLVLLKLK 10 Unmodified _LLVLVLLKLK_ 0 0 0 REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3310546875 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 137.29 1 132.37 131.87 132.87 -4.9216 0 0 0 0.22588 1 26391 26391 0 0 1 + 27760 20069 18483 18490 27389 27389 0.27231525337901985 LLVLVLLKLK 10 Unmodified _LLVLVLLKLK_ 0 0 0 REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3247680664062 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 137.31 1 132.38 131.88 132.88 -4.9216 0 0 0 2.8426 1 26395 26395 0 0 1 + 27761 20069 18483 18490 27390 27390 0.27231525337901985 LLVLVLLKLK 10 Unmodified _LLVLVLLKLK_ 0 0 0 REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3282470703125 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 68.329 1 64.938 64.438 65.438 -3.3903 0 0 0 2.8426 1 12897 12897 0 0 1 + 27762 20069 18483 18490 27391 27391 0.27231525337901985 LLVLVLVLLL 10 Unmodified _LLVLVLVLLL_ 0 0 0 REV__nc|ENSG00000127838|Q8N490-3|PNKD REV__nc|ENSG00000127838|Q8N490-3|PNKD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.89239501953125 3 369.942028 1106.80425 NaN NaN NaN NaN NaN NaN NaN 23.102 1 23.102 22.602 23.602 0 0 0 0 2.8426 1 3929 3929 0 0 1 + 27763 24030 18484 18491 27392 27392 0.2551243407231141 LLVLVLVLLL 10 Unmodified _LLVLVLVLLL_ 0 0 0 REV__nc|ENSG00000127838|Q8N490-3|PNKD REV__nc|ENSG00000127838|Q8N490-3|PNKD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 369.8917236328125 3 369.942028 1106.80425 NaN NaN NaN NaN NaN NaN NaN 29.891 1 27.998 27.498 28.498 -1.8928 0 0 0 2.8426 1 5103 5103 0 0 1 + 27764 24030 18484 18491 27393 27393 0.2551243407231141 LLVLVLVLLV 10 Unmodified _LLVLVLVLLV_ 0 0 0 nc|ENSG00000127838|Q8N490-3|PNKD nc|ENSG00000127838|Q8N490-3|PNKD nc|ENSG00000127838|Q8N490-3|PNKD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7915649414062 2 547.401579 1092.7886 0.20076 0.0001099 -2.6051 -0.0014261 -2.4044 -0.0013162 547.8991483061958 135.83 0.24283 131.19 131.04 131.29 -4.6399 8 6 2 0 0 0 0.91149 1 26774 26774 0 0 1 1110500 27765 12311 18485 18492 27394 27394 0.24592147555244992 LLVMKKRY 8 Unmodified _LLVMKKRY_ 0 0 0 REV__ENST00000471759.5_1_1:76255691-76255869:+|nuORF REV__ENST00000471759.5_1_1:76255691-76255869:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 351.2218933105469 3 350.887929 1049.64196 0.068 2.386E-05 0.77453 0.00027177 0.84253 0.00029563 350.88822928797964 104.77 0.56148 100.72 100.34 100.9 -4.0543 17 15 2 0 0 0 8448 1 20146 20146 6.2058 0 1 1076400 + 27766 22044 18486 18493 27395 27395 0.11912147118528083 LLVPDLVVII 10 Unmodified _LLVPDLVVII_ 0 0 0 REV__EME1|p.K470Rfs*11|1|0.39|ENSG00000154920|chr17:50380373-50380373|A/-|frameshift_variant REV__EME1|p.K470Rfs*11|1|0.39|ENSG00000154920|chr17:50380373-50380373|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7879638671875 2 547.365193 1092.71583 0.33465 0.00018318 3.2177 0.0017613 3.5524 0.0019445 547.8690058464562 151.27 0.20673 151.27 151.1 151.3 0 6 5 2 0 0 0 1.1333 1 30286 30286 0.043787 0 1 2563200 + 27767 13807 18487 18494 27396 27396 0.17318393761843254 LLVPFARY 8 Unmodified _LLVPFARY_ 0 0 0 REV__nc|ENSG00000124155|Q969N2-2|PIGT REV__nc|ENSG00000124155|Q969N2-2|PIGT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.7790222167969 2 489.792195 977.569838 NaN NaN NaN NaN NaN NaN NaN 121.05 1 116.36 115.86 116.86 -4.6873 0 0 0 0.22722 1 23237 23237 0.68139 0 1 + 27768 15752 18488 18495 27397 27397 0.08015556036457383 LLVPNNFY 8 Unmodified _LLVPNNFY_ 0 0 0 REV__tr|U7T5W1|U7T5W1_FUSNUHTHluxR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00104PE=4SV=1 REV__tr|U7T5W1|U7T5W1_FUSNUHTHluxR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00104PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27178955078125 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 90.45 1 90.45 89.95 90.95 0 0 0 0 0.21486 1 17667 17667 10.183 0 1 + 27769 25427 18489 18496 27398 27398 0.027349729028514957 LLVREILGSQT 11 Unmodified _LLVREILGSQT_ 0 0 0 ENSG00000214842|ENST00000399080|RAD51AP2;RAD51AP2|p.V876Dfs*5|1|0.03|ENSG00000214842|chr2:17515789-17515790|-/CTGGT|frameshift_variant;RAD51AP2|p.L587Cfs*8|1|0.16|ENSG00000214842|chr2:17516656-17516656|A/-|frameshift_variant;RAD51AP2|p.F682Lfs*10|1|0.37|ENSG00000214842|chr2:17516370-17516370|A/-|frameshift_variant;RAD51AP2|p.Y754Mfs*3|1|0.19|ENSG00000214842|chr2:17516156-17516156|A/-|frameshift_variant;RAD51AP2|p.K861Ifs*17|1|0.05|ENSG00000214842|chr2:17515831-17515834|TCTT/-|frameshift_variant;RAD51AP2|p.P866Qfs*13|1|0.23|ENSG00000214842|chr2:17515821-17515821|A/-|frameshift_variant ENSG00000214842|ENST00000399080|RAD51AP2 ENSG00000214842|ENST00000399080|RAD51AP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 410.1148681640625 3 410.246839 1227.71869 NaN NaN NaN NaN NaN NaN NaN 56.181 1 53.004 52.504 53.504 -3.1761 0 0 0 0.23698 1 10447 10447 1.2148 0.4383 1 27770 7734 18490 18497 27399 27399 0.11393617148701196 LLVRFFNATA 10 Unmodified _LLVRFFNATA_ 0 0 0 REV__ENSG00000147571|ENST00000276571|CRH REV__ENSG00000147571|ENST00000276571|CRH MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3338012695312 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 47.971 1 45.021 44.521 45.521 -2.9499 0 0 0 0.22569 1 8772 8772 15.847 1.0089 1 + 27771 16941 18491 18498 27400 27400 0.08057997639662062 LLVRFQKLW 9 Unmodified _LLVRFQKLW_ 0 0 0 TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2852172851562 2 601.874051 1201.73355 1.0885 0.00065514 3.6345 0.0021875 4.723 0.0028426 602.8772135286523 145.6 0.28474 140.93 140.79 141.07 -4.6694 12 7 3 0 0 0 0.64439 1 28884 28884 0.40827 0.14288 1 13857000 27772 25871 18492 18499 27401 27401 0.14075153807380048 LLVTGVRRI 9 Unmodified _LLVTGVRRI_ 0 0 0 REV__nc|ENSG00000198589|P50851-2|LRBA REV__nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.2187805175781 3 342.897593 1025.67095 0.68647 0.00023539 -1.6366 -0.00056117 -0.95008 -0.00032578 342.8971850866476 27.183 0.67376 25.401 25.202 25.875 -1.7821 29 18 2 0 0 0 0.45972 1 4833 4833 8.1555 0 1 3867800 + 27773 19425 18493 18500 27402 27402 0.15914007739161207 LLVTGVRRI 9 Unmodified _LLVTGVRRI_ 0 0 0 REV__nc|ENSG00000198589|P50851-2|LRBA REV__nc|ENSG00000198589|P50851-2|LRBA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.897593 1025.67095 -0.52735 -0.00018083 -0.27942 -9.5813E-05 -0.80677 -0.00027664 342.89755627652534 27.274 0.77763 25.351 25.155 25.933 -1.9222 -0.048218 0.00050622 NaN 8.1555 27 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2141700 + 27774 19425 18493 18500 0.15914007739161207 LLVVAVKLIL 10 Unmodified _LLVVAVKLIL_ 0 0 0 REV__ENST00000527534.1_3_11:125359647-125365795:-|nuORF REV__ENST00000527534.1_3_11:125359647-125365795:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2656860351562 2 540.891378 1079.7682 0.14483 7.8337E-05 1.9224 0.0010398 2.0672 0.0011181 540.8919520127907 136.34 0.21002 131.45 131.31 131.52 -4.8951 8 5 2 0 0 0 1.133 1 26204 26204 0.0013812 0 1 1612700 + 27775 22710 18494 18501 27403 27403 0.23150976895453823 LLVVAVKLIL 10 Unmodified _LLVVAVKLIL_ 0 0 0 REV__ENST00000527534.1_3_11:125359647-125365795:-|nuORF REV__ENST00000527534.1_3_11:125359647-125365795:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.891378 1079.7682 0.31208 0.0001688 2.4468 0.0013234 2.7589 0.0014922 540.8932648194349 136.65 0.10773 131.82 131.73 131.84 -4.8307 0.18616 0.00039464 NaN 0.0013812 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 2367400 + 27776 22710 18494 18501 0.23150976895453823 LLVVLYKI 8 Unmodified _LLVVLYKI_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;PTPRC|p.Q1150Pfs*6|1|0.27|ENSG00000081237|chr1:198752707-198752708|-/C|frameshift_variant;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;PTPRC|p.N1239Tfs*17|1|0.43|ENSG00000081237|chr1:198755972-198755972|A/-|frameshift_variant;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2425537109375 2 480.828246 959.64194 0.11706 5.6287E-05 0.055209 2.6546E-05 0.17227 8.2833E-05 480.8282282359135 108.5 0.6664 108.5 108.18 108.84 0 32 18 2 0 0 0 1.0244 1 21284 21284 0.79363 0 1 4254200 27777 1625 18495 18502 27404 27404 0.16050470390189275 LLVVRTSLW 9 Unmodified _LLVVRTSLW_ 0 0 0 nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF nc|ENSG00000072310|P36956-3|SREBF1 nc|ENSG00000072310|P36956-3|SREBF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7725219726562 2 543.837134 1085.65972 NaN NaN NaN NaN NaN NaN NaN 161.62 1 161.62 161.12 162.12 0 0 0 0 0.23508 1 32463 32463 7.2892 0 1 27778 1463 18496 18503 27405 27405 0.1203118564505985 LLVYAFPDQ 9 Unmodified _LLVYAFPDQ_ 0 0 0 nc|ENSG00000099866|Q13477-2|MADCAM1;nc|ENSG00000099866|Q13477-3|MADCAM1;ENSG00000099866|ENST00000215637|MADCAM1 nc|ENSG00000099866|Q13477-2|MADCAM1 nc|ENSG00000099866|Q13477-2|MADCAM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2816772460938 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 143.57 1 138.54 138.04 139.04 -5.0261 0 0 0 0.19638 1 27678 27678 0.37959 0.25177 1 27779 1907 18497 18504 27406 27406 0.024552247287601858 LLVYNYQEY 9 Unmodified _LLVYNYQEY_ 0 0 0 nc|ENSG00000205944|Q13117-2|DAZ2;nc|ENSG00000205916|Q86SG3-2|DAZ4;ENSG00000187191|ENST00000382365|DAZ3;nc|ENSG00000187191|Q9NR90|DAZ3;nc|ENSG00000205944|Q13117-3|DAZ2;nc|ENSG00000205944|Q13117|DAZ2;nc|ENSG00000205916|Q86SG3|DAZ4;nc|ENSG00000188120|Q9NQZ3-2|DAZ1;ENSG00000205944|ENST00000382440|DAZ2;ENSG00000205916|ENST00000682740|DAZ4;ENSG00000188120|ENST00000405239|DAZ1 nc|ENSG00000205944|Q13117-2|DAZ2 nc|ENSG00000205944|Q13117-2|DAZ2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.281494140625 2 602.797872 1203.58119 0.44214 0.00026652 -1.992 -0.0012008 -1.5498 -0.00093423 602.7981429696889 143.5 0.10471 138.47 138.38 138.49 -5.0261 4 2 2 0 0 0 0.6215 1 27666 27666 1.2148 0.94944 1 1200400 27780 7102 18498 18505 27407 27407 -0.012457114507014921 LLWAKYFYPHL 11 Unmodified _LLWAKYFYPHL_ 0 0 0 REV__ENST00000271469.7_2_1:162531473-162535866:+|nuORF REV__ENST00000271469.7_2_1:162531473-162535866:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 484.2597961425781 3 484.267574 1449.78089 NaN NaN NaN NaN NaN NaN NaN 157.99 1 153.2 152.7 153.7 -4.7937 0 0 0 0.22632 1 31420 31420 1.4074 1.2354 1 + 27781 20273 18499 18506 27408 27408 0.07399388287694819 LLWDPSTGKQV 11 Unmodified _LLWDPSTGKQV_ 0 0 0 ENSG00000073536|ENST00000442241|NLE1 ENSG00000073536|ENST00000442241|NLE1 ENSG00000073536|ENST00000442241|NLE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7529907226562 2 622.337695 1242.66084 0.38883 0.00024198 -0.11761 -7.3195E-05 0.27122 0.00016879 622.8392054168223 117.21 0.83856 117.21 116.78 117.62 0 35 23 3 0 0 0 0.063586 1 23056 23056 79.427 41.251 1 4138600 27782 1485 18500 18507 27409 27409 0.0492135522326862 LLWDPSTGKQV 11 Unmodified _LLWDPSTGKQV_ 0 0 0 ENSG00000073536|ENST00000442241|NLE1 ENSG00000073536|ENST00000442241|NLE1 ENSG00000073536|ENST00000442241|NLE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.76123046875 2 622.337695 1242.66084 0.79546 0.00049504 -0.49777 -0.00030978 0.29769 0.00018527 622.8389863804879 121.8 0.74251 117.12 116.77 117.51 -4.6873 58 20 4 0 0 0 0.3362 1 23341 23341 47.732 21.464 1 5489900 27783 1485 18500 18507 27410 27410 0.0492135522326862 LLWDPSTGKQV 11 Unmodified _LLWDPSTGKQV_ 0 0 0 ENSG00000073536|ENST00000442241|NLE1 ENSG00000073536|ENST00000442241|NLE1 ENSG00000073536|ENST00000442241|NLE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.77587890625 2 622.337695 1242.66084 0.52797 0.00032858 -0.33182 -0.0002065 0.19615 0.00012207 622.3375239810263 121.56 0.76174 117.03 116.75 117.51 -4.5305 53 20 4 0 0 0 0.056433 4 23433 23433;23462;23474;23477 59.052 37.515 1 4907300 27784 1485 18500 18507 27411;27412;27413;27414 27411 0.0492135522326862 LLWDPSTGKQV 11 Unmodified _LLWDPSTGKQV_ 0 0 0 ENSG00000073536|ENST00000442241|NLE1 ENSG00000073536|ENST00000442241|NLE1 ENSG00000073536|ENST00000442241|NLE1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 622.337695 1242.66084 1.2027 0.00074851 -0.8736 -0.00054367 0.32914 0.00020484 622.3370052803259 121.62 0.7075 117.07 116.82 117.53 -4.5476 -0.035245 -0.000454 NaN 79.427 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7052900 27785 1485 18500 18507 0.0492135522326862 LLWEATGGQA 10 Unmodified _LLWEATGGQA_ 0 0 0 ENST00000334554.11_1_22:20133474-20133888:+|nuORF ENST00000334554.11_1_22:20133474-20133888:+|nuORF ENST00000334554.11_1_22:20133474-20133888:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7008666992188 2 523.269281 1044.52401 -0.46532 -0.00024349 -0.30942 -0.00016191 -0.77474 -0.0004054 523.269279015309 83.737 0.54154 79.843 79.548 80.09 -3.8937 26 14 2 0 0 0 0.664 1 15868 15868 14.838 0 1 1844700 27786 8795 18501 18508 27415 27415 0.0035286606357658457 LLWEQQHLL 9 Unmodified _LLWEQQHLL_ 0 0 0 ENST00000557046.1_1_14:69908965-69921585:+|nuORF;ENST00000031146.8_2_14:69890892-69921585:+|nuORF;ENST00000336643.9_1_14:69908863-69921585:+|nuORF ENST00000557046.1_1_14:69908965-69921585:+|nuORF ENST00000557046.1_1_14:69908965-69921585:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2740478515625 2 590.329673 1178.64479 NaN NaN NaN NaN NaN NaN NaN 161.72 1 156.93 156.43 157.43 -4.7898 0 0 0 0.21065 1 32164 32164 20.454 1.0146 1 27787 8068 18502 18509 27416 27416 0.0626169377703718 LLWGATWI 8 Unmodified _LLWGATWI_ 0 0 0 REV__ENSG00000124466|ENST00000244333|LYPD3 REV__ENSG00000124466|ENST00000244333|LYPD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2423095703125 2 480.271096 958.527639 -0.00022733 -1.0918E-07 -1.4129 -0.00067857 -1.4131 -0.00067867 480.27093222678906 84.342 0.44691 80.678 80.504 80.951 -3.6641 19 12 3 0 0 0 8448 1 16484 16484 0.063987 0 1 1366800 + 27788 15778 18503 18510 27417 27417 0.04671580628075844 LLWGATWI 8 Unmodified _LLWGATWI_ 0 0 0 REV__ENSG00000124466|ENST00000244333|LYPD3 REV__ENSG00000124466|ENST00000244333|LYPD3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.271096 958.527639 -0.00022733 -1.0918E-07 -1.4129 -0.00067857 -1.4131 -0.00067867 480.27093222678906 84.342 0.44691 80.678 80.504 80.951 -3.6641 -0.067915 -0.000724 NaN 0.063987 19 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1366800 + 27789 15778 18503 18510 0.04671580628075844 LLWGATWI 8 Unmodified _LLWGATWI_ 0 0 0 REV__ENSG00000124466|ENST00000244333|LYPD3 REV__ENSG00000124466|ENST00000244333|LYPD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.271096 958.527639 0.195 9.3655E-05 -0.73366 -0.00035235 -0.53865 -0.0002587 480.2707606162389 84.61 0.62604 80.7 80.423 81.049 -3.9093 -0.045382 -7.1581E-05 NaN 0.063987 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1105100 + 27790 15778 18503 18510 0.04671580628075844 LLWGATWI 8 Unmodified _LLWGATWI_ 0 0 0 REV__ENSG00000124466|ENST00000244333|LYPD3 REV__ENSG00000124466|ENST00000244333|LYPD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.271096 958.527639 -0.058323 -2.8011E-05 -0.40247 -0.00019329 -0.46079 -0.0002213 480.2708903011508 84.571 0.45457 80.859 80.594 81.049 -3.7117 0.1133 0.00024654 NaN 0.063987 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 957330 + 27791 15778 18503 18510 0.04671580628075844 LLWHRAQY 8 Unmodified _LLWHRAQY_ 0 0 0 ENSG00000171608|ENST00000377346|PIK3CD;PIK3CD|p.L169Cfs*48|1|0.14|ENSG00000171608|chr1:9715979-9715979|C/-|frameshift_variant;nc|ENSG00000171608|O00329-2|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.79638671875 2 543.795801 1085.57705 NaN NaN NaN NaN NaN NaN NaN 152.5 1 147.75 147.25 148.25 -4.7523 0 0 0 0.21486 1 30304 30304 10.183 0.83596 1 27792 6157 18504 18511 27418 27418 0.03768288636888428 LLWIHAKI 8 Unmodified _LLWIHAKI_ 0 0 0 ENST00000421439.1_1_8:100708528-100708768:+|nuORF ENST00000421439.1_1_8:100708528-100708768:+|nuORF ENST00000421439.1_1_8:100708528-100708768:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 497.3166809082031 2 497.315838 992.617122 NaN NaN NaN NaN NaN NaN NaN 164.69 1 159.9 159.4 160.4 -4.7898 0 0 0 0.21486 1 32929 32929 6.3541 0 1 27793 9669 18505 18512 27419 27419 0.12051835307465808 LLWKVFGP 8 Unmodified _LLWKVFGP_ 0 0 0 REV__ENST00000280557.10_1_12:123237429-123238318:+|nuORF REV__ENST00000280557.10_1_12:123237429-123238318:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 480.2077941894531 2 480.289288 958.564024 NaN NaN NaN NaN NaN NaN NaN 68.372 1 64.836 64.336 65.336 -3.5362 0 0 0 0.21486 1 12848 12848 6.3541 0 1 + 27794 20303 18506 18513 27420 27420 0.08308457524799451 LLWLNKTPLY 10 Unmodified _LLWLNKTPLY_ 0 0 0 REV__ENSG00000179104|ENST00000321196|TMTC2 REV__ENSG00000179104|ENST00000321196|TMTC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7581176757812 2 630.871174 1259.72779 NaN NaN NaN NaN NaN NaN NaN 82.409 1 82.409 81.909 82.909 0 0 0 0 0.22588 1 16055 16055 10.824 2.0785 1 + 27795 18639 18507 18514 27421 27421 0.10832010505032486 LLWRDPPLGH 10 Unmodified _LLWRDPPLGH_ 0 0 0 REV__ENST00000285018.4_1_3:13916628-13921389:-|nuORF REV__ENST00000285018.4_1_3:13916628-13921389:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2935791015625 2 602.33529 1202.65603 NaN NaN NaN NaN NaN NaN NaN 87.226 1 87.226 86.726 87.726 0 0 0 0 0.22588 1 17025 17025 7.9102 2.1783 1 + 27796 20329 18508 18515 27422 27422 0.06280515871162606 LLWRRRQKRRT 11 Unmodified _LLWRRRQKRRT_ 0 0 0 ENSG00000197471|ENST00000652691|SPN ENSG00000197471|ENST00000652691|SPN ENSG00000197471|ENST00000652691|SPN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.686767578125 3 523.662203 1567.96478 0.17979 9.4148E-05 -1.1929 -0.00062469 -1.0131 -0.00053055 523.6616388110413 121.09 0.10714 121.09 121.04 121.15 0 4 2 2 0 0 0 0.82662 1 23870 23870 0.094841 0 1 836910 27797 7370 18509 18516 27423 27423 0.20351594561725506 LLWRRRQKRRT 11 Unmodified _LLWRRRQKRRT_ 0 0 0 ENSG00000197471|ENST00000652691|SPN ENSG00000197471|ENST00000652691|SPN ENSG00000197471|ENST00000652691|SPN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6893310546875 3 523.662203 1567.96478 -0.1967 -0.000103 0.93162 0.00048786 0.73492 0.00038485 523.9962595806613 132.16 0.24591 127.52 127.31 127.55 -4.6399 8 6 2 0 0 0 0.89134 1 26016 26016 0 0 1 1607900 27798 7370 18509 18516 27424 27424 0.20351594561725506 LLWRYTHWLFY 11 Unmodified _LLWRYTHWLFY_ 0 0 0 REV__nc|ENSG00000115155|Q9HC10-3|OTOF REV__nc|ENSG00000115155|Q9HC10-3|OTOF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.281982421875 3 533.281995 1596.82415 NaN NaN NaN NaN NaN NaN NaN 107.82 1 103.5 103 104 -4.32 0 0 0 0.22632 1 21241 21241 0.026206 0 1 + 27799 24006 18510 18517 27425 27425 0.04961578064967398 LLWRYTHWLFY 11 Unmodified _LLWRYTHWLFY_ 0 0 0 REV__nc|ENSG00000115155|Q9HC10-3|OTOF REV__nc|ENSG00000115155|Q9HC10-3|OTOF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2796630859375 3 533.281995 1596.82415 NaN NaN NaN NaN NaN NaN NaN 151.55 1 146.38 145.88 146.88 -5.1759 0 0 0 0.22632 1 29373 29373 0.026206 0 1 + 27800 24006 18510 18517 27426 27426 0.04961578064967398 LLWTAPELLRA 11 Unmodified _LLWTAPELLRA_ 0 0 0 ENSG00000101890|ENST00000218006|GUCY2F;GUCY2F|p.V883Pfs*16|1|0.02|ENSG00000101890|chrX:109392043-109392046|GACC/-|frameshift_variant ENSG00000101890|ENST00000218006|GUCY2F ENSG00000101890|ENST00000218006|GUCY2F MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 428.2547302246094 3 428.255446 1281.74451 NaN NaN NaN NaN NaN NaN NaN 91.953 1 88.028 87.528 88.528 -3.9251 0 0 0 0.22632 1 18005 18005 5.4027 5.3589 1 27801 2093 18511 18518 27427 27427 0.11490511390979918 LLWVDEVSR 9 Unmodified _LLWVDEVSR_ 0 0 0 REV__ENST00000595090.5_1_19:49496726-49496906:+|nuORF REV__ENST00000595090.5_1_19:49496726-49496906:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.2514953613281 3 372.873113 1115.59751 0.048867 1.8221E-05 -1.3047 -0.00048649 -1.2558 -0.00046827 372.8724470913284 51.911 1.0085 48.865 48.333 49.341 -3.0453 34 28 2 0 0 0 0.88313 1 9518 9518 0.86438 0.46366 1 557620 + 27802 23370 18512 18519 27428 27428 0.04433414506047484 LLWVDEVSR 9 Unmodified _LLWVDEVSR_ 0 0 0 REV__ENST00000595090.5_1_19:49496726-49496906:+|nuORF REV__ENST00000595090.5_1_19:49496726-49496906:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 372.873113 1115.59751 0.097646 3.641E-05 -0.37393 -0.00013943 -0.27629 -0.00010302 372.8727944330327 48.951 0.67619 48.951 48.556 49.232 0 0.013403 0.00016819 NaN 0.86438 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 695180 + 27803 23370 18512 18519 0.04433414506047484 LLWVDEVSR 9 Unmodified _LLWVDEVSR_ 0 0 0 REV__ENST00000595090.5_1_19:49496726-49496906:+|nuORF REV__ENST00000595090.5_1_19:49496726-49496906:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 372.873113 1115.59751 -0.41254 -0.00015383 0.085725 3.1965E-05 -0.32682 -0.00012186 372.87294102695364 51.878 0.88776 48.996 48.42 49.308 -2.8824 0.058438 0.00068237 NaN 0.86438 32 25 2 NaN NaN NaN NaN 0 NaN NaN 0 735940 + 27804 23370 18512 18519 0.04433414506047484 LLYCIGSFY 9 Unmodified _LLYCIGSFY_ 0 0 0 REV__nc|ENSG00000168679|O15374-3|SLC16A4 REV__nc|ENSG00000168679|O15374-3|SLC16A4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015075683594 3 360.180778 1077.5205 NaN NaN NaN NaN NaN NaN NaN 115.87 1 111.38 110.88 111.88 -4.486 0 0 0 0.23508 1 22843 22843 2.9952 0.26005 1 + 27805 18044 18513 18520 27429 27429 -0.015155200346271158 LLYDGKLSSA 10 Unmodified _LLYDGKLSSA_ 0 0 0 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2783203125 2 533.792589 1065.57063 0.11901 6.3524E-05 -0.2771 -0.00014791 -0.1581 -8.4391E-05 533.7925915088821 85.568 0.50163 85.568 85.322 85.824 0 20 13 2 0 0 0 1.0247 1 16699 16699 31.636 30.954 1 1435900 27806 12082 18514 18521 27430 27430 0.040463058948716935 LLYDGKLSSA 10 Unmodified _LLYDGKLSSA_ 0 0 0 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.272705078125 2 533.792589 1065.57063 0.73758 0.00039371 -0.62319 -0.00033265 0.11439 6.1058E-05 533.7924564167046 89.684 0.50119 85.639 85.417 85.918 -4.0443 20 13 2 0 0 0 1.0699 1 17106 17106 25.997 11.592 1 1528300 27807 12082 18514 18521 27431 27431 0.040463058948716935 LLYDIIDCP 9 Unmodified _LLYDIIDCP_ 0 0 0 REV__ENSG00000174225|ENST00000450049|ARL13A REV__ENSG00000174225|ENST00000450049|ARL13A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2718505859375 2 532.770268 1063.52598 0.45309 0.00024139 -2.5184 -0.0013417 -2.0653 -0.0011003 532.7675207605467 136.12 0.20239 131.23 131.11 131.31 -4.8951 8 5 2 0 0 0 0.48181 1 26165 26165 0.37959 0 1 1212000 + 27808 18399 18515 18522 27432 27432 -0.003238412428117954 LLYGGDLHSA 10 Unmodified _LLYGGDLHSA_ 0 0 0 DHX29|p.E253Gfs*5|1|0.4|ENSG00000067248|chr5:55294035-55294039|CTCTT/-|frameshift_variant;ENST00000504778.5_1_5:54579003-54603452:-|nuORF;DHX29|p.D780Tfs*15|1|0.32|ENSG00000067248|chr5:55276356-55276356|T/-|frameshift_variant;DHX29|p.I805Nfs*17|1|0.27|ENSG00000067248|chr5:55276281-55276282|-/C|frameshift_variant;DHX29|p.K807Nfs*16|1|0.19|ENSG00000067248|chr5:55276272-55276272|T/-|frameshift_variant;ENSG00000067248|ENST00000251636|DHX29 DHX29|p.E253Gfs*5|1|0.4|ENSG00000067248|chr5:55294035-55294039|CTCTT/-|frameshift_variant DHX29|p.E253Gfs*5|1|0.4|ENSG00000067248|chr5:55294035-55294039|CTCTT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6842041015625 2 523.269281 1044.52401 -0.19383 -0.00010142 -0.42236 -0.00022101 -0.61618 -0.00032243 523.2692099907308 82.673 0.98347 79.065 78.43 79.413 -3.6079 53 27 3 0 0 0 0.22589 1 16164 16164 68.081 28.131 1 3305500 27809 829 18516 18523 27433 27433 0.0035286606357658457 LLYGGDLHSA 10 Unmodified _LLYGGDLHSA_ 0 0 0 DHX29|p.E253Gfs*5|1|0.4|ENSG00000067248|chr5:55294035-55294039|CTCTT/-|frameshift_variant;ENST00000504778.5_1_5:54579003-54603452:-|nuORF;DHX29|p.D780Tfs*15|1|0.32|ENSG00000067248|chr5:55276356-55276356|T/-|frameshift_variant;DHX29|p.I805Nfs*17|1|0.27|ENSG00000067248|chr5:55276281-55276282|-/C|frameshift_variant;DHX29|p.K807Nfs*16|1|0.19|ENSG00000067248|chr5:55276272-55276272|T/-|frameshift_variant;ENSG00000067248|ENST00000251636|DHX29 DHX29|p.E253Gfs*5|1|0.4|ENSG00000067248|chr5:55294035-55294039|CTCTT/-|frameshift_variant DHX29|p.E253Gfs*5|1|0.4|ENSG00000067248|chr5:55294035-55294039|CTCTT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6785888671875 2 523.269281 1044.52401 -0.49602 -0.00025955 0.11588 6.0635E-05 -0.38014 -0.00019892 523.2692493469145 83.029 0.47913 79.155 78.883 79.362 -3.8736 34 13 3 0 0 0 0.41575 1 15733 15733 43.858 19.184 1 3089700 27810 829 18516 18523 27434 27434 0.0035286606357658457 LLYGQVVLL 9 Unmodified _LLYGQVVLL_ 0 0 0 ENST00000269300.8_1_17:8782283-8782535:-|nuORF ENST00000269300.8_1_17:8782283-8782535:-|nuORF ENST00000269300.8_1_17:8782283-8782535:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 509.7954406738281 2 509.320786 1016.62702 0.20742 0.00010564 0.26184 0.00013336 0.46926 0.000239 509.320682588897 154.83 0.60463 154.83 154.36 154.96 0 25 16 2 0 0 0 0.43757 1 30960 30960 0.40827 0 1 3036800 27811 8395 18517 18524 27435 27435 0.11936978522192021 LLYGWMNSNY 10 Unmodified _LLYGWMNSNY_ 0 0 0 ENSG00000185149|ENST00000329476|NPY2R ENSG00000185149|ENST00000329476|NPY2R ENSG00000185149|ENST00000329476|NPY2R MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7509765625 2 630.789524 1259.56449 NaN NaN NaN NaN NaN NaN NaN 132.78 1 127.98 127.48 128.48 -4.799 0 0 0 0.22588 1 25554 25554 4.3292 0.38484 1 27812 6965 18518 18525 27436 27436 -0.05490535608305436 LLYKLHAA 8 Unmodified _LLYKLHAA_ 0 0 0 ENST00000260327.8_1_15:44817819-44817921:+|nuORF ENST00000260327.8_1_15:44817819-44817921:+|nuORF ENST00000260327.8_1_15:44817819-44817921:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2482604980469 2 464.78437 927.554188 NaN NaN NaN NaN NaN NaN NaN 27.689 1 25.693 25.193 26.193 -1.9962 0 0 0 0.23749 1 4642 4642 0.62683 0.21856 1 27813 8278 18519 18526 27437 27437 0.08751269519416383 LLYKLLKLLK 10 Unmodified _LLYKLLKLLK_ 0 0 0 REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7661743164062 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 14.98 1 13.758 13.258 14.258 -1.2219 0 0 0 0.22588 1 2065 2065 0.40072 0.40072 1 + 27814 22525 18520 18527 27438 27438 0.2509891036663703 LLYKLLKLLK 10 Unmodified _LLYKLLKLLK_ 0 0 0 REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7564086914062 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 21.025 1 19.64 19.14 20.14 -1.3847 0 0 0 0.22588 1 3289 3289 0 0 1 + 27815 22525 18520 18527 27439 27439 0.2509891036663703 LLYKLLKLLK 10 Unmodified _LLYKLLKLLK_ 0 0 0 REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7711181640625 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 83.434 1 79.56 79.06 80.06 -3.8736 0 0 0 2.8426 1 15848 15848 0 0 1 + 27816 22525 18520 18527 27440 27440 0.2509891036663703 LLYKLLKLLK 10 Unmodified _LLYKLLKLLK_ 0 0 0 REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.767333984375 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 159.93 1 154.7 154.2 155.2 -5.2299 0 0 0 2.8426 1 31046 31046 0 0 1 + 27817 22525 18520 18527 27441 27441 0.2509891036663703 LLYKLLKLLK 10 Unmodified _LLYKLLKLLK_ 0 0 0 REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.774169921875 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 159.96 1 154.73 154.23 155.23 -5.2299 0 0 0 2.8426 1 31051 31051 0 0 1 + 27818 22525 18520 18527 27442 27442 0.2509891036663703 LLYKLLKLLK 10 Unmodified _LLYKLLKLLK_ 0 0 0 REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7789916992188 2 622.93886 1243.86317 NaN NaN NaN NaN NaN NaN NaN 74.133 1 70.539 70.039 71.039 -3.594 0 0 0 0.22588 1 14074 14074 0 0 1 + 27819 22525 18520 18527 27443 27443 0.2509891036663703 LLYKQIFR 8 Unmodified _LLYKQIFR_ 0 0 0 REV__ZNF148|p.K284Nfs*2|1|0.43|ENSG00000163848|chr3:125233874-125233874|T/-|frameshift_variant REV__ZNF148|p.K284Nfs*2|1|0.43|ENSG00000163848|chr3:125233874-125233874|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2711791992188 2 540.831852 1079.64915 0.29503 0.00015956 -1.0005 -0.00054111 -0.70549 -0.00038155 540.8299721540848 146.36 0.20998 146.36 146.18 146.39 0 6 5 2 0 0 0 0.97173 1 29270 29270 12.532 0 1 2149600 + 27820 17622 18521 18528 27444 27444 0.11251202990615639 LLYKRCLCL 9 Unmodified _LLYKRCLCL_ 0 0 0 ENST00000340857.3_1_22:38202960-38203092:+|nuORF ENST00000340857.3_1_22:38202960-38203092:+|nuORF ENST00000340857.3_1_22:38202960-38203092:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.219970703125 3 375.548807 1123.62459 -0.48785 -0.00018321 -0.22647 -8.5051E-05 -0.71432 -0.00026826 375.88312487625495 76.227 0.44456 72.594 72.305 72.749 -3.6337 15 12 2 0 0 0 0.87836 1 14521 14521 1.1933 0 1 711710 27821 8854 18522 18529 27445 27445 0.0677248352121751 LLYKVVDI 8 Unmodified _LLYKVVDI_ 0 0 0 REV__ANK2|p.E1746*|1|0.07|ENSG00000145362|chr4:113353848-113353849|-/C|frameshift_variant REV__ANK2|p.E1746*|1|0.07|ENSG00000145362|chr4:113353848-113353849|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77020263671875 2 481.799686 961.584819 -0.29907 -0.00014409 0.69234 0.00033357 0.39327 0.00018948 481.7999205351669 60.893 0.45569 60.893 60.662 61.118 0 22 12 2 0 0 0 0.72861 1 11713 11713 10.183 0 1 1301200 + 27822 13045 18523 18530 27446 27446 0.10249003113801791 LLYLQELA 8 Unmodified _LLYLQELA_ 0 0 0 ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2;GTF3C2|p.L250Sfs*4|1|0.33|ENSG00000115207|chr2:27342055-27342056|-/A|frameshift_variant ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7825012207031 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 148.43 1 143.37 142.87 143.87 -5.0595 0 0 0 0.23899 1 28747 28747 1.3295 0 1 27823 2829 18524 18531 27447 27447 0.06612126217089553 LLYLRLFKLKK 11 Unmodified _LLYLRLFKLKK_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7210998535156 3 478.990152 1433.94863 -0.64179 -0.00030741 -2.1574 -0.0010334 -2.7992 -0.0013408 479.3233075380184 13.889 0.17575 12.775 12.699 12.875 -1.1142 7 4 2 0 0 0 0.96228 1 2058 2058 0 0 1 246890 27824 1465 18525 18532 27448 27448 0.2490107555229315 LLYLRLPPP 9 Unmodified _LLYLRLPPP_ 0 0 0 ENST00000536810.5_1_10:114710066-114710189:+|nuORF ENST00000536810.5_1_10:114710066-114710189:+|nuORF ENST00000536810.5_1_10:114710066-114710189:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.261474609375 2 541.342052 1080.66955 NaN NaN NaN NaN NaN NaN NaN 60.55 1 57.617 57.117 58.117 -2.9333 0 0 0 0.23508 1 11653 11653 2.3027 0 1 27825 11026 18526 18533 27449 27449 0.13244373650422858 LLYNPTSI 8 Unmodified _LLYNPTSI_ 0 0 0 ENST00000598221.1_1_19:49796478-49828345:-|nuORF;nc|ENSG00000063127|Q9GZN6-2|SLC6A16;ENSG00000063127|ENST00000335875|SLC6A16 ENST00000598221.1_1_19:49796478-49828345:-|nuORF ENST00000598221.1_1_19:49796478-49828345:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5281982421875 2 460.758018 919.501483 0.23164 0.00010673 -1.2499 -0.00057591 -1.0183 -0.00046918 460.7566915087028 136.96 1.1582 132.12 131.72 132.88 -4.84 109 32 4 0 0 0 0.56049 1 26523 26523 24.674 1.5255 1 29483000 27826 11681 18527 18534 27450 27450 0.03851266665969888 LLYNPTSI 8 Unmodified _LLYNPTSI_ 0 0 0 ENST00000598221.1_1_19:49796478-49828345:-|nuORF;nc|ENSG00000063127|Q9GZN6-2|SLC6A16;ENSG00000063127|ENST00000335875|SLC6A16 ENST00000598221.1_1_19:49796478-49828345:-|nuORF ENST00000598221.1_1_19:49796478-49828345:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.758018 919.501483 0.21064 9.7052E-05 -2.6743 -0.0012322 -2.4637 -0.0011352 460.7567105951189 132.04 0.90134 132.04 131.71 132.61 0 -0.0042988 -0.00051292 NaN 24.674 68 25 4 NaN NaN NaN NaN 0 NaN NaN 0 27186000 27827 11681 18527 18534 0.03851266665969888 LLYNPTSI 8 Unmodified _LLYNPTSI_ 0 0 0 ENST00000598221.1_1_19:49796478-49828345:-|nuORF;nc|ENSG00000063127|Q9GZN6-2|SLC6A16;ENSG00000063127|ENST00000335875|SLC6A16 ENST00000598221.1_1_19:49796478-49828345:-|nuORF ENST00000598221.1_1_19:49796478-49828345:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.758018 919.501483 0.016246 7.4855E-06 -2.0333 -0.00093685 -2.017 -0.00092937 460.75671931755744 136.89 1.1258 131.97 131.67 132.79 -4.9216 -0.073444 7.7807E-05 NaN 24.674 110 31 4 NaN NaN NaN NaN 0 NaN NaN 0 57030000 27828 11681 18527 18534 0.03851266665969888 LLYQPKYY 8 Unmodified _LLYQPKYY_ 0 0 0 REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.788330078125 2 544.294768 1086.57498 0.67159 0.00036554 -2.5802 -0.0014044 -1.9087 -0.0010389 544.7953708799187 77.783 0.27568 77.783 77.634 77.91 0 6 5 2 0 0 0 1.0035 1 15114 15114 11.114 0 1 1562100 + 27829 15500 18528 18535 27451 27451 0.03515815108403331 LLYQTQLSV 9 Unmodified _LLYQTQLSV_ 0 0 0 REV__ENST00000426918.2_1_9:125719318-125748500:+|nuORF REV__ENST00000426918.2_1_9:125719318-125748500:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2720947265625 2 532.802957 1063.59136 0.73924 0.00039387 -0.04963 -2.6443E-05 0.68961 0.00036743 532.8027985266025 108.05 0.83979 103.91 103.39 104.23 -4.135 37 23 2 0 0 0 0.73268 1 20813 20813 13.042 0.80181 1 2019400 + 27830 21045 18529 18536 27452 27452 0.062108962745242025 LLYRTTNRIYR 11 Unmodified _LLYRTTNRIYR_ 0 0 0 REV__ENSG00000231256|ENST00000449302|CFAP97D1 REV__ENSG00000231256|ENST00000449302|CFAP97D1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2703857421875 3 490.284287 1467.83103 NaN NaN NaN NaN NaN NaN NaN 71.646 1 68.397 67.897 68.897 -3.2492 0 0 0 0.22632 1 13955 13955 1.4551 1.4237 1 + 27831 19745 18530 18537 27453 27453 0.11582890945533109 LLYSGFVY 8 Unmodified _LLYSGFVY_ 0 0 0 nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ADCY10|p.N1597Tfs*4|1|0.07|ENSG00000143199|chr1:167809721-167809721|T/-|frameshift_variant;ENSG00000143199|ENST00000367851|ADCY10;nc|ENSG00000143199|Q96PN6-3|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2535400390625 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 115.32 1 115.32 114.82 115.82 0 0 0 0 0.21486 1 22695 22695 11.114 1.767 1 27832 70 18531 18538 27454 27454 0.013841681542885453 LLYSVKVSI 9 Unmodified _LLYSVKVSI_ 0 0 0 HERVH-int_dup3524|chrX:4541521-4542183:-|2.9075701410676067|0.0031813577269869|9.84|447.0|32|2|anti-sense HERVH-int_dup3524|chrX:4541521-4542183:-|2.9075701410676067|0.0031813577269869|9.84|447.0|32|2|anti-sense HERVH-int_dup3524|chrX:4541521-4542183:-|2.9075701410676067|0.0031813577269869|9.84|447.0|32|2|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 511.25311279296875 2 511.318243 1020.62193 -0.41157 -0.00021044 2.7837 0.0014233 2.3721 0.0012129 511.8218626024015 134.12 0.10136 129.25 129.16 129.26 -4.8726 4 2 2 0 0 0 0.56979 1 25754 25754 0.073264 0 1 732100 27833 11890 18532 18539 27455 27455 0.11244674659576503 LLYTMRLTI 9 Unmodified _LLYTMRLTI_ 0 0 0 ENSG00000011677|ENST00000370314|GABRA3;GABRA5|p.A356Pfs*15|1|0.24|ENSG00000186297|chr15:26943397-26943397|A/-|frameshift_variant;ENSG00000186297|ENST00000335625|GABRA5 ENSG00000011677|ENST00000370314|GABRA3 ENSG00000011677|ENST00000370314|GABRA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2223205566406 3 375.222977 1122.6471 -0.51482 -0.00019317 0.16024 6.0126E-05 -0.35458 -0.00013305 375.2229411527591 60.946 0.41798 57.723 57.49 57.908 -3.2237 17 11 2 0 0 0 0.73814 1 11397 11397 4.5289 0 1 581850 27834 1082 18533 18540 27456 27456 0.09068406190499445 LLYWFLKVY 9 Unmodified _LLYWFLKVY_ 0 0 0 nc|ENSG00000100979|P55058-2|PLTP nc|ENSG00000100979|P55058-2|PLTP nc|ENSG00000100979|P55058-2|PLTP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7617797851562 2 622.857535 1243.70052 NaN NaN NaN NaN NaN NaN NaN 62.56 1 62.56 62.06 63.06 0 0 0 0 0.23508 1 12013 12013 7.9102 2.1783 1 27835 12258 18534 18541 27457 27457 0.08841526964670265 LLYYPFSY 8 Unmodified _LLYYPFSY_ 0 0 0 nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2 nc|ENSG00000076685|P49902-2|NT5C2 nc|ENSG00000076685|P49902-2|NT5C2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2684326171875 2 533.268219 1064.52188 NaN NaN NaN NaN NaN NaN NaN 135.65 1 130.76 130.26 131.26 -4.8951 0 0 0 0.21486 1 26060 26060 11.114 2.5212 1 27836 1542 18535 18542 27458 27458 -0.007795626742336026 LMAAADNDGD 10 Unmodified _LMAAADNDGD_ 0 0 0 ENSG00000135175|ENST00000257627|OCM2;ENSG00000122543|ENST00000242104|OCM ENSG00000135175|ENST00000257627|OCM2 ENSG00000135175|ENST00000257627|OCM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 497.2141418457031 2 496.703114 991.391675 -0.0012342 -6.1304E-07 -1.5189 -0.00075444 -1.5201 -0.00075505 496.7023485463998 91.858 0.66258 91.858 91.496 92.158 0 29 18 2 0 0 0 0.47483 1 17970 17970 0.20733 0.079513 1 3073100 27837 3228 18536 18543 27459 27459 -0.10436526735554708 LMAAADNDGD 10 Unmodified _LMAAADNDGD_ 0 0 0 ENSG00000135175|ENST00000257627|OCM2;ENSG00000122543|ENST00000242104|OCM ENSG00000135175|ENST00000257627|OCM2 ENSG00000135175|ENST00000257627|OCM2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 496.703114 991.391675 -0.0012342 -6.1304E-07 -1.5189 -0.00075444 -1.5201 -0.00075505 496.7023485463998 91.858 0.66258 91.858 91.496 92.158 0 -0.17956 -0.00011313 NaN 0.20733 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3073100 27838 3228 18536 18543 -0.10436526735554708 LMAAADNDGD 10 Unmodified _LMAAADNDGD_ 0 0 0 ENSG00000135175|ENST00000257627|OCM2;ENSG00000122543|ENST00000242104|OCM ENSG00000135175|ENST00000257627|OCM2 ENSG00000135175|ENST00000257627|OCM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 496.703114 991.391675 0.084162 4.1804E-05 -1.3281 -0.00065968 -1.244 -0.00061787 496.70231131420024 96.172 0.64115 92.122 91.828 92.469 -4.0496 0.084548 7.6391E-05 NaN 0.20733 39 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3189300 27839 3228 18536 18543 -0.10436526735554708 LMAAADNDGD 10 Unmodified _LMAAADNDGD_ 0 0 0 ENSG00000135175|ENST00000257627|OCM2;ENSG00000122543|ENST00000242104|OCM ENSG00000135175|ENST00000257627|OCM2 ENSG00000135175|ENST00000257627|OCM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 496.703114 991.391675 0.040019 1.9878E-05 -1.4668 -0.00072857 -1.4268 -0.00070869 496.7024263828582 96.319 0.76082 92.084 91.71 92.471 -4.2348 0.046671 -6.1392E-05 NaN 0.20733 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 3272600 27840 3228 18536 18543 -0.10436526735554708 LMAAADNDGD 10 Unmodified _LMAAADNDGD_ 0 0 0 ENSG00000135175|ENST00000257627|OCM2;ENSG00000122543|ENST00000242104|OCM ENSG00000135175|ENST00000257627|OCM2 ENSG00000135175|ENST00000257627|OCM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 496.703114 991.391675 -0.20547 -0.00010206 -1.3368 -0.00066401 -1.5423 -0.00076606 496.7024614218914 95.967 0.6191 92.086 91.817 92.436 -3.881 0.048342 6.7736E-05 NaN 0.20733 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1667000 27841 3228 18536 18543 -0.10436526735554708 LMAHGATRW 9 Unmodified _LMAHGATRW_ 0 0 0 ENST00000492237.5_1_10:123969920-123970031:+|nuORF ENST00000492237.5_1_10:123969920-123970031:+|nuORF ENST00000492237.5_1_10:123969920-123970031:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2672729492188 2 521.766186 1041.51782 -1.5386 -0.00080277 0.12827 6.6929E-05 -1.4103 -0.00073584 521.7663293806626 15.443 3.2314 14.09 13.507 16.739 -1.3534 185 92 4 0 0 0 0.55979 1 2278 2278 15.847 15.847 1 13595000 27842 10536 18537 18544 27460 27460 -0.0012793064895504358 LMCLLWILF 9 Unmodified _LMCLLWILF_ 0 0 0 ENST00000487651.5_1_7:100457471-100457768:+|nuORF ENST00000487651.5_1_7:100457471-100457768:+|nuORF ENST00000487651.5_1_7:100457471-100457768:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3325805664062 2 576.321417 1150.62828 NaN NaN NaN NaN NaN NaN NaN 69.329 1 65.938 65.438 66.438 -3.3903 0 0 0 0.1966 1 13109 13109 0.12781 0 1 27843 10472 18538 18545 27461 27461 0.05899153295081305 LMEDDDLYSC 10 Unmodified _LMEDDDLYSC_ 0 0 0 nc|ENSG00000165478|Q14CZ8-2|HEPACAM;ENSG00000165478|ENST00000298251|HEPACAM;HEPACAM|p.V207M|1|0.19|ENSG00000165478|chr11:124923819-124923819|C/T|missense_variant nc|ENSG00000165478|Q14CZ8-2|HEPACAM nc|ENSG00000165478|Q14CZ8-2|HEPACAM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2933349609375 2 602.230847 1202.44714 NaN NaN NaN NaN NaN NaN NaN 142.51 1 137.85 137.35 138.35 -4.656 0 0 0 2.8426 1 28170 28170 0.013265 0 1 27844 12432 18539 18546 27462 27462 -0.1459848133010837 LMEDLKVLY 9 Unmodified _LMEDLKVLY_ 0 0 0 DNAH5|p.P3316Lfs*22|3|0.33|ENSG00000039139|chr5:13766130-13766130|G/-|frameshift_variant;DNAH5|p.I4068*|1|0.07|ENSG00000039139|chr5:13721077-13721077|T/-|frameshift_variant;DNAH5|p.F4486Lfs*7|2|0.23|ENSG00000039139|chr5:13701317-13701317|A/-|frameshift_variant;ENSG00000039139|ENST00000265104|DNAH5 DNAH5|p.P3316Lfs*22|3|0.33|ENSG00000039139|chr5:13766130-13766130|G/-|frameshift_variant DNAH5|p.P3316Lfs*22|3|0.33|ENSG00000039139|chr5:13766130-13766130|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2071838378906 3 375.207104 1122.59948 NaN NaN NaN NaN NaN NaN NaN 92.436 1 92.436 91.936 92.936 0 0 0 0 0.23508 1 18073 18073 2.9952 0 1 27845 864 18540 18547 27463 27463 0.04308707199652417 LMEHIHKL 8 Unmodified _LMEHIHKL_ 0 0 0 ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19 ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.5284423828125 3 340.86015 1019.55862 -0.41184 -0.00014038 0.31342 0.00010683 -0.098421 -3.3548E-05 340.86015526859103 71.847 0.70752 68.536 68.318 69.025 -3.3107 32 19 2 0 0 0 8448 1 14057 14057 14.838 4.7643 1 2271100 27846 9801 18541 18548 27464 27464 0.0496241067066876 LMEHIHKL 8 Unmodified _LMEHIHKL_ 0 0 0 ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19 ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 340.86015 1019.55862 0.28855 9.8354E-05 -0.43553 -0.00014845 -0.14698 -5.01E-05 340.85992797698987 72.306 0.46621 68.679 68.371 68.838 -3.6275 0.019502 -0.00054816 NaN 14.838 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1593400 27847 9801 18541 18548 0.0496241067066876 LMEHIHKL 8 Unmodified _LMEHIHKL_ 0 0 0 ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19 ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 340.86015 1019.55862 -0.32372 -0.00011034 0.42068 0.00014339 0.096954 3.3048E-05 340.8601713942407 72.302 1.1176 68.763 68.295 69.412 -3.5385 0.10374 0.00032738 NaN 14.838 38 31 2 NaN NaN NaN NaN 0 NaN NaN 0 1882000 27848 9801 18541 18548 0.0496241067066876 LMEKHKETY 9 Unmodified _LMEKHKETY_ 0 0 0 REV__ENSG00000146197|ENST00000274938|SCUBE3 REV__ENSG00000146197|ENST00000274938|SCUBE3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.248046875 2 589.797349 1177.58014 0.0082104 4.8425E-06 0.51477 0.00030361 0.52298 0.00030845 589.7976529578002 107.28 0.45301 102.96 102.68 103.14 -4.32 18 12 2 0 0 0 0.19311 1 21132 21132 37.974 7.3375 1 1522900 + 27849 16874 18542 18549 27465 27465 -0.0015424909124703845 LMELKTLWENK 11 Unmodified _LMELKTLWENK_ 0 0 0 ENSG00000165417|ENST00000553612|GTF2A1;ENST00000556268.1_1_14:81663747-81682801:-|nuORF ENSG00000165417|ENST00000553612|GTF2A1 ENSG00000165417|ENST00000553612|GTF2A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 468.9210205078125 3 468.923367 1403.74827 -0.42103 -0.00019743 0.46072 0.00021604 0.039694 1.8613E-05 469.25806960436404 110.36 0.72966 105.99 105.58 106.31 -4.3776 52 20 3 0 0 0 0.4692 1 21708 21708 4.8309 0 1 8028800 27850 5627 18543 18550 27466 27466 0.06254813102532353 LMESPEGQLSL 11 Unmodified _LMESPEGQLSL_ 0 0 0 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2997436523438 2 602.299921 1202.58529 NaN NaN NaN NaN NaN NaN NaN 119.78 1 115.14 114.64 115.64 -4.645 0 0 0 0.17694 1 22988 22988 24.021 8.1734 1 27851 4350 18544 18551 27467 27467 -0.007899900193024223 LMFVRREKT 9 Unmodified _LMFVRREKT_ 0 0 0 REV__ENST00000523711.5_1_8:1824717-1874701:+|nuORF REV__ENST00000523711.5_1_8:1824717-1874701:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2666625976562 2 590.336975 1178.6594 NaN NaN NaN NaN NaN NaN NaN 173.86 1 168.97 168.47 169.47 -4.8845 0 0 0 0.23508 1 34526 34526 9.3831 2.66 1 + 27852 13106 18545 18552 27468 27468 0.07721442653519262 LMGPGPPPPP 10 Unmodified _LMGPGPPPPP_ 0 0 0 ENSG00000136367|ENST00000419474|ZFHX2;nc|ENSG00000136367|Q9C0A1-2|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77447509765625 2 480.254588 958.494624 0.21202 0.00010182 -0.77881 -0.00037403 -0.56679 -0.0002722 480.25565866228993 36.744 0.85037 34.407 34.061 34.911 -2.3375 61 23 4 0 0 0 0.61985 1 6468 6468 18.135 3.2967 1 2353500 27853 4005 18546 18553 27469 27469 0.013716305137222662 LMGPVVHEV 9 Unmodified _LMGPVVHEV_ 0 0 0 ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT;PCNT|p.G2137Vfs*2|1|0.18|ENSG00000160299|chr21:46416323-46416323|G/-|frameshift_variant ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2657470703125 2 490.76532 979.516088 0.33583 0.00016481 -0.12408 -6.0894E-05 0.21175 0.00010392 490.76541041893665 92.749 0.55788 88.605 88.351 88.909 -4.1435 24 15 2 0 0 0 0.23667 1 17679 17679 50.855 16.753 1 1600100 27854 5247 18547 18554 27470 27470 0.02551015542451296 LMGPVVHEV 9 Unmodified _LMGPVVHEV_ 0 0 0 ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT;PCNT|p.G2137Vfs*2|1|0.18|ENSG00000160299|chr21:46416323-46416323|G/-|frameshift_variant ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2764587402344 2 490.76532 979.516088 -0.14554 -7.1425E-05 1.0321 0.00050653 0.88659 0.00043511 490.7657583714366 92.51 0.60788 88.702 88.377 88.985 -3.8083 23 17 2 0 0 0 0.69192 1 17696 17696 20.454 13.164 1 1464300 27855 5247 18547 18554 27471 27471 0.02551015542451296 LMGTGSILTSL 11 Unmodified _LMGTGSILTSL_ 0 0 0 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7;ENSG00000111700|ENST00000381545|SLCO1B3;nc|ENSG00000111700|Q9NPD5-2|SLCO1B3;ENST00000545880.1_1_12:21011377-21011503:+|nuORF;SLCO1B3|p.I188*|1|0.41|ENSG00000111700|chr12:20862487-20862487|C/-|frameshift_variant;SLCO1B3|p.P280Afs*6|1|0.3|ENSG00000111700|chr12:20875332-20875333|-/T|frameshift_variant nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.774658203125 2 546.8021 1091.58965 0.61237 0.00033484 -2.1724 -0.0011879 -1.56 -0.00085303 546.8001278011925 120.01 0.74525 115.37 114.95 115.69 -4.645 61 20 4 0 0 0 0.53992 1 22962 22962 0.58532 0.17705 1 9199500 27856 2638 18548 18555 27472 27472 0.04751519194269349 LMHAGLLR 8 Unmodified _LMHAGLLR_ 0 0 0 REV__ENST00000590513.2_1_17:40704842-40705703:-|nuORF REV__ENST00000590513.2_1_17:40704842-40705703:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.18170166015625 3 304.181224 909.521842 NaN NaN NaN NaN NaN NaN NaN 68.983 1 65.804 65.304 66.304 -3.1796 0 0 0 0.21486 1 13405 13405 0.45834 0 1 + 27857 23322 18549 18556 27473 27473 0.06346158844792171 LMIELRKSY 9 Unmodified _LMIELRKSY_ 0 0 0 REV__ENSG00000119203|ENST00000238112|CPSF3 REV__ENSG00000119203|ENST00000238112|CPSF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3331909179688 2 576.825909 1151.63727 0.17871 0.00010308 -1.58 -0.00091136 -1.4012 -0.00080828 576.825821987381 136.27 0.24225 131.38 131.24 131.48 -4.8951 9 6 2 0 0 0 0.84208 1 26201 26201 7.2892 0 1 848180 + 27858 15572 18550 18557 27474 27474 0.06751218185127073 LMIIHHPLL 9 Unmodified _LMIIHHPLL_ 0 0 0 LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|18|3|sense LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|18|3|sense LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|18|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7828979492188 2 543.828255 1085.64196 0.32005 0.00017405 2.5158 0.0013682 2.8358 0.0015422 543.828894463621 113.16 0.57957 113.16 112.73 113.31 0 23 16 2 0 0 0 0.42933 1 22217 22217 2.6312 0 1 1895400 27859 12096 18551 18558 27475 27475 0.10256147118525405 LMIWALPRS 9 Unmodified _LMIWALPRS_ 0 0 0 REV__ENST00000556683.1_1_14:51712110-51721234:+|nuORF REV__ENST00000556683.1_1_14:51712110-51721234:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78662109375 2 543.810062 1085.60557 0.33851 0.00018408 -2.2071 -0.0012003 -1.8686 -0.0010162 544.3093700732551 146.23 0.17154 146.23 146.08 146.25 0 6 4 2 0 0 0 0.54076 1 29212 29212 17.113 3.498 1 2142500 + 27860 23003 18552 18559 27476 27476 0.06619270221813167 LMKEFLDKK 9 Unmodified _LMKEFLDKK_ 0 0 0 nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1;ENST00000465029.5_1_2:111419157-111435602:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant;BUB1|p.E50K|1|0.11|ENSG00000169679|chr2:110674163-110674163|C/T|missense_variant nc|ENSG00000169679|O43683-2|BUB1 nc|ENSG00000169679|O43683-2|BUB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3212280273438 2 576.328285 1150.64202 NaN NaN NaN NaN NaN NaN NaN 122.32 1 117.78 117.28 118.28 -4.5476 0 0 0 0.23508 1 24113 24113 10.824 0.75 1 27861 5997 18553 18560 27477 27477 0.07272102327874563 LMKFEVKKE 9 Unmodified _LMKFEVKKE_ 0 0 0 ENSG00000182759|ENST00000333480|MAFA;MAF|p.P69Lfs*26|1|0.07|ENSG00000178573|chr16:79599697-79599697|G/-|frameshift_variant;nc|ENSG00000178573|O75444|MAF;ENSG00000178573|ENST00000326043|MAF ENSG00000182759|ENST00000333480|MAFA ENSG00000182759|ENST00000333480|MAFA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3235473632812 2 576.328285 1150.64202 NaN NaN NaN NaN NaN NaN NaN 121.98 1 117.3 116.8 117.8 -4.6873 0 0 0 0.23508 1 23418 23418 11.64 2.2572 1 27862 6810 18554 18561 27478 27478 0.07272102327874563 LMKITKKKKR 10 Unmodified _LMKITKKKKR_ 0 0 0 REV__nc|ENSG00000123901|Q9NYM4-2|GPR83 REV__nc|ENSG00000123901|Q9NYM4-2|GPR83 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2412109375 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 42.603 1 42.603 42.103 43.103 0 0 0 0 2.8426 1 7969 7969 0 0 1 + 27863 15744 18555 18562 27479 27479 0.2172741643516929 LMKRYRRR 8 Unmodified _LMKRYRRR_ 0 0 0 REV__ENSG00000128833|ENST00000261839|MYO5C REV__ENSG00000128833|ENST00000261839|MYO5C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2521362304688 2 589.856201 1177.69785 NaN NaN NaN NaN NaN NaN NaN 11.226 1 11.226 10.726 11.726 0 0 0 0 0.21486 1 1471 1471 0.69038 0.16561 1 + 27864 15936 18556 18563 27480 27480 0.1161079307869386 LMLELLECY 9 Unmodified _LMLELLECY_ 0 0 0 CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant;CFAP46|p.E683Kfs*3|1|0.38|ENSG00000171811|chr10:132916623-132916623|G/-|frameshift_variant;CFAP46|p.L933Wfs*7|1|0.45|ENSG00000171811|chr10:132908595-132908595|G/-|frameshift_variant;CFAP46|p.V1485Cfs*2|1|0.35|ENSG00000171811|chr10:132872734-132872734|C/-|frameshift_variant;nc|ENSG00000171811|Q8IYW2-3|CFAP46;ENST00000475340.1_1_10:134750974-134755988:-|nuORF;nc|ENSG00000171811|Q8IYW2-2|CFAP46;CFAP46|p.A499Sfs*24|2|0.32|ENSG00000171811|chr10:132922215-132922216|-/T|frameshift_variant;ENSG00000171811|ENST00000368586|CFAP46 CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant;ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.14654541015625 3 376.188945 1125.545 0.31312 0.00011779 -0.151 -5.6803E-05 0.16212 6.0988E-05 376.18888948304067 71.716 1.4271 68.088 67.664 69.091 -3.6275 119 39 6 0 0 0 0.77219 1 13699 13699 2.9952 0.26005 1 136660000 27865 6174;500 18557 18564 27481 27481 -0.012746279434168173 LMLIQRRHWFP 11 Unmodified _LMLIQRRHWFP_ 0 0 0 REV__PHKG2|p.R305Afs*19|1|0.54|ENSG00000156873|chr16:30756696-30756696|C/-|frameshift_variant REV__PHKG2|p.R305Afs*19|1|0.54|ENSG00000156873|chr16:30756696-30756696|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21148681640625 4 374.963137 1495.82344 -0.81311 -0.00030489 1.4604 0.0005476 0.64729 0.00024271 374.96412742037467 15.425 0.17301 14.311 14.167 14.34 -1.1142 7 4 2 0 0 0 0.66298 1 2365 2365 0.094841 0.094841 1 464050 + 27866 17274 18558 18565 27482 27482 0.09536460144272496 LMLIQRRHWFP 11 Unmodified _LMLIQRRHWFP_ 0 0 0 REV__PHKG2|p.R305Afs*19|1|0.54|ENSG00000156873|chr16:30756696-30756696|C/-|frameshift_variant REV__PHKG2|p.R305Afs*19|1|0.54|ENSG00000156873|chr16:30756696-30756696|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 374.963137 1495.82344 -0.81311 -0.00030489 1.4604 0.0005476 0.64729 0.00024271 374.96412742037467 15.425 0.17301 14.311 14.167 14.34 -1.1142 0.063652 -0.0020924 NaN 0.094841 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 464050 + 27867 17274 18558 18565 0.09536460144272496 LMLKIRRRSTW 11 Unmodified _LMLKIRRRSTW_ 0 0 0 ENST00000256442.9_1_5:68462964-68463831:+|nuORF ENST00000256442.9_1_5:68462964-68463831:+|nuORF ENST00000256442.9_1_5:68462964-68463831:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 487.1551513671875 3 487.294129 1458.86056 NaN NaN NaN NaN NaN NaN NaN 12.111 1 12.111 11.611 12.611 0 0 0 0 0.22632 1 1662 1662 0.026206 0 1 27868 8255 18559 18566 27483 27483 0.1494813169003919 LMLLHTVV 8 Unmodified _LMLLHTVV_ 0 0 0 ENSG00000130054|ENST00000252338|NALF2 ENSG00000130054|ENST00000252338|NALF2 ENSG00000130054|ENST00000252338|NALF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 309.1905517578125 3 309.189496 924.546659 NaN NaN NaN NaN NaN NaN NaN 101.07 1 101.07 100.57 101.57 0 0 0 0 0.21486 1 19830 19830 0.45834 0 1 27869 3583 18560 18567 27484 27484 0.08136793927474173 LMLMKRLA 8 Unmodified _LMLMKRLA_ 0 0 0 ENST00000488454.5_1_18:47901543-47902279:+|nuORF ENST00000488454.5_1_18:47901543-47902279:+|nuORF ENST00000488454.5_1_18:47901543-47902279:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.8671875 3 325.866248 974.576914 NaN NaN NaN NaN NaN NaN NaN 31.041 1 31.041 30.541 31.541 0 0 0 0 0.2386 1 5594 5594 0.063987 0 1 27870 10485 18561 18568 27485 27485 0.0886082932103136 LMLSKRQQLS 10 Unmodified _LMLSKRQQLS_ 0 0 0 REV__ENST00000521622.1_1_8:106810653-107072670:-|nuORF REV__ENST00000521622.1_1_8:106810653-107072670:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2909545898438 2 602.34754 1202.68053 NaN NaN NaN NaN NaN NaN NaN 119.17 1 119.17 118.67 119.67 0 0 0 0 0.22588 1 23479 23479 8.7454 0 1 + 27871 22649 18562 18569 27486 27486 0.08729407962391633 LMLWDAKLY 9 Unmodified _LMLWDAKLY_ 0 0 0 UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1 UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3382568359375 2 576.809728 1151.6049 0.29193 0.00016839 -2.5531 -0.0014727 -2.2612 -0.0013043 576.8083924930562 121.73 0.44955 121.73 121.61 122.06 0 24 12 2 0 0 0 0.65155 1 24036 24036 15.847 3.3156 1 1705900 27872 5209 18563 18570 27487 27487 0.03516430782110547 LMMWRRMK 8 Unmodified _LMMWRRMK_ 0 0 0 ENST00000442738.6_1_22:38349729-38352826:+|nuORF ENST00000442738.6_1_22:38349729-38352826:+|nuORF ENST00000442738.6_1_22:38349729-38352826:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3180541992188 2 576.303567 1150.59258 NaN NaN NaN NaN NaN NaN NaN 98.166 1 94.038 93.538 94.538 -4.1278 0 0 0 0.21323 1 19274 19274 14.582 1.0738 1 27873 9904 18564 18571 27488 27488 0.02330792566431228 LMPDIAVGV 9 Unmodified _LMPDIAVGV_ 0 0 0 BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant;ENSG00000011114|ENST00000334746|BTBD7 BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2282409667969 2 457.754421 913.494289 NaN NaN NaN NaN NaN NaN NaN 157.38 1 152.59 152.09 153.09 -4.7885 0 0 0 0.21408 1 31297 31297 19.439 1.304 1 27874 343 18565 18572 27489 27489 0.034082107938843365 LMPLCLWIY 9 Unmodified _LMPLCLWIY_ 0 0 0 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3175048828125 2 576.303224 1150.5919 NaN NaN NaN NaN NaN NaN NaN 93.803 1 93.803 93.303 94.303 0 0 0 0 0.20924 1 18361 18361 20.871 8.3397 1 27875 4601 18566 18573 27490 27490 0.022622763983690675 LMPLCLWIY 9 Unmodified _LMPLCLWIY_ 0 0 0 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3284912109375 2 576.303224 1150.5919 0.30034 0.00017309 -3.0531 -0.0017595 -2.7527 -0.0015864 576.3006453559876 98.384 0.34551 94.115 93.987 94.333 -4.2692 12 9 2 0 0 0 0.57821 1 18792 18792 14.582 0.96682 1 1293500 27876 4601 18566 18573 27491 27491 0.022622763983690675 LMPLCLWIY 9 Unmodified _LMPLCLWIY_ 0 0 0 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.315185546875 2 576.303224 1150.5919 NaN NaN NaN NaN NaN NaN NaN 103.69 1 99.637 99.137 100.14 -4.0543 0 0 0 0.23508 1 19937 19937 9.3474 1.4373 1 27877 4601 18566 18573 27492 27492 0.022622763983690675 LMRKERWWETY 11 Unmodified _LMRKERWWETY_ 0 0 0 REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2691040039062 3 533.269649 1596.78712 NaN NaN NaN NaN NaN NaN NaN 13.325 1 13.325 12.825 13.825 0 0 0 0 0.22632 1 1917 1917 0.094841 0 1 + 27878 20359 18567 18574 27493 27493 0.012595384569294765 LMRKERWWETY 11 Unmodified _LMRKERWWETY_ 0 0 0 REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26904296875 3 533.269649 1596.78712 NaN NaN NaN NaN NaN NaN NaN 165.92 1 165.92 165.42 166.42 0 0 0 0 0.22632 1 33732 33732 0.50596 0.50539 1 + 27879 20359 18567 18574 27494 27494 0.012595384569294765 LMRRFIVIR 9 Unmodified _LMRRFIVIR_ 0 0 0 REV__ENST00000446936.6_1_3:128889931-128890333:-|nuORF REV__ENST00000446936.6_1_3:128889931-128890333:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2831420898438 2 602.378978 1202.7434 0.3945 0.00023764 1.5038 0.00090583 1.8983 0.0011435 602.3802128822164 148.34 0.1727 148.34 148.26 148.43 0 5 4 2 0 0 0 0.87974 1 29673 29673 1.8442 0 1 2210500 + 27880 21765 18568 18575 27495 27495 0.150140185410919 LMSAEANLA 9 Unmodified _LMSAEANLA_ 0 0 0 nc|ENSG00000134575|P11117-2|ACP2;ENST00000444355.5_1_11:47267202-47270343:-|nuORF;ACP2|p.L293Rfs*89|1|0.29|ENSG00000134575|chr11:47243102-47243102|A/-|frameshift_variant;ENSG00000134575|ENST00000672073|ACP2 nc|ENSG00000134575|P11117-2|ACP2 nc|ENSG00000134575|P11117-2|ACP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.22998046875 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 24.333 1 24.333 23.833 24.833 0 0 0 0 0.22962 1 4188 4188 14.838 0 1 27881 36 18569 18576 27496 27496 -0.014418541082363845 LMTCCLFC 8 Unmodified _LMTCCLFC_ 0 0 0 REV__ENST00000528947.5_2_11:7535100-7569685:+|nuORF REV__ENST00000528947.5_2_11:7535100-7569685:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 467.2302551269531 2 467.188688 932.362823 NaN NaN NaN NaN NaN NaN NaN 78.434 1 74.775 74.275 75.275 -3.6588 0 0 0 0.23749 1 14942 14942 0.063987 0 1 + 27882 22732 18570 18577 27497 27497 -0.1060638216154075 LMTFGWRQIIE 11 Unmodified _LMTFGWRQIIE_ 0 0 0 REV__ENST00000510625.1_1_3:134255984-134293730:+|nuORF REV__ENST00000510625.1_1_3:134255984-134293730:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2497253417969 3 465.248074 1392.72239 NaN NaN NaN NaN NaN NaN NaN 113.9 1 113.9 113.4 114.4 0 0 0 0 0.22632 1 22400 22400 3.0723 0.57378 1 + 27883 22540 18571 18578 27498 27498 0.04173963650941914 LMTLVGEQGV 10 Unmodified _LMTLVGEQGV_ 0 0 0 nc|ENSG00000114631|Q9NZ53-2|PODXL2;ENSG00000114631|ENST00000342480|PODXL2 nc|ENSG00000114631|Q9NZ53-2|PODXL2 nc|ENSG00000114631|Q9NZ53-2|PODXL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7003784179688 2 523.781167 1045.54778 -0.41898 -0.00021945 -2.5923 -0.0013578 -3.0112 -0.0015772 523.7798092433646 149.98 0.76266 144.78 144.5 145.27 -5.1994 25 21 2 0 0 0 0.59928 1 29065 29065 19.257 5.3509 1 1997500 27884 2801 18572 18579 27499 27499 0.026829635057538326 LMVDHVTEV 9 Unmodified _LMVDHVTEV_ 0 0 0 ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1 ENST00000602875.5_1_5:139930287-139937028:-|nuORF ENST00000602875.5_1_5:139930287-139937028:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2670288085938 2 521.765517 1041.51648 0.12017 6.27E-05 -0.22946 -0.00011973 -0.10929 -5.7025E-05 521.7654481856173 87.569 0.83655 87.569 87.22 88.057 0 72 23 4 0 0 0 1.4195E-07 2 17102 17059;17102 147.83 55.009 1 31231000 27885 7696 18573 18580 27500;27501 27501 -0.00261609528365625 LMVDHVTEV 9 Unmodified _LMVDHVTEV_ 0 0 0 ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1 ENST00000602875.5_1_5:139930287-139937028:-|nuORF ENST00000602875.5_1_5:139930287-139937028:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26708984375 2 521.765517 1041.51648 -0.27228 -0.00014207 0.017279 9.0157E-06 -0.255 -0.00013305 521.7655629612748 91.328 0.9613 87.403 86.962 87.923 -3.9251 100 27 5 0 0 0 1.4195E-07 5 17858 17825;17858;17903;17944;17948 147.83 52.089 1 54839000 27886 7696 18573 18580 27502;27503;27504;27505;27506 27503 -0.00261609528365625 LMVDHVTEV 9 Unmodified _LMVDHVTEV_ 0 0 0 ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1 ENST00000602875.5_1_5:139930287-139937028:-|nuORF ENST00000602875.5_1_5:139930287-139937028:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2671508789062 2 521.765517 1041.51648 -0.40998 -0.00021391 0.18643 9.7272E-05 -0.22355 -0.00011664 521.7656776852186 91.569 0.92936 87.475 87.051 87.981 -4.0946 91 26 5 0 0 0 1.4686E-07 5 17416 17377;17416;17450;17488;17491 108 44.742 1 57147000 27887 7696 18573 18580 27507;27508;27509;27510;27511 27508 -0.00261609528365625 LMVDHVTEV 9 Unmodified _LMVDHVTEV_ 0 0 0 ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1 ENST00000602875.5_1_5:139930287-139937028:-|nuORF ENST00000602875.5_1_5:139930287-139937028:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2667846679688 2 521.765517 1041.51648 0.18311 9.554E-05 -0.45947 -0.00023974 -0.27636 -0.0001442 521.7653603057773 91.276 0.93082 87.468 87.032 87.962 -3.8083 92 26 5 0 0 0 3.5092E-24 6 17459 17410;17415;17436;17459;17503;17552 179.23 58.152 1 39156000 27888 7696 18573 18580 27512;27513;27514;27515;27516;27517 27515 -0.00261609528365625 LMVDRYLNR 9 Unmodified _LMVDRYLNR_ 0 0 0 REV__ENSG00000146757|ENST00000328747|ZNF92;REV__ENSG00000178338|ENST00000322434|ZNF354B;REV__ENSG00000196110|ENST00000591998|ZNF699;REV__ZNF354A|p.T185Nfs*6|1|0.36|ENSG00000169131|chr5:178713324-178713325|-/T|frameshift_variant REV__ENSG00000146757|ENST00000328747|ZNF92 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2573852539062 2 590.318783 1178.62301 NaN NaN NaN NaN NaN NaN NaN 98.534 1 94.577 94.077 95.077 -3.9564 0 0 0 0.23508 1 18911 18911 7.9102 0 1 + 27889 16898;18601;19216;18079 18574 18581 27518 27518 0.04084565756807024 LMWFYNCA 8 Unmodified _LMWFYNCA_ 0 0 0 REV__nc|ENSG00000004948|P30988-5|CALCR REV__nc|ENSG00000004948|P30988-5|CALCR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.677490234375 2 524.224974 1046.43539 -0.34629 -0.00018154 -0.099488 -5.2154E-05 -0.44578 -0.00023369 524.2248823974134 35.787 0.5859 33.535 33.266 33.852 -2.2527 42 16 3 0 0 0 1.0147 1 6333 6333 9.3474 0 1 5619000 + 27890 13847 18575 18582 27519 27519 -0.08596588772115865 LMWLYDVLP 9 Unmodified _LMWLYDVLP_ 0 0 0 REV__ENSG00000144136|ENST00000272542|SLC20A1 REV__ENSG00000144136|ENST00000272542|SLC20A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3233642578125 2 575.304278 1148.594 0.49248 0.00028333 -0.95259 -0.00054803 -0.46011 -0.00026471 575.3040743155799 117.67 0.55695 113.06 112.75 113.31 -4.6106 28 15 3 0 0 0 0.62102 1 22583 22583 11.64 0.14559 1 1797700 + 27891 16772 18576 18583 27520 27520 0.02565028407821046 LMWWWFQWLVP 11 Unmodified _LMWWWFQWLVP_ 0 0 0 ENST00000398868.7_1_11:63426327-63426598:-|nuORF ENST00000398868.7_1_11:63426327-63426598:-|nuORF ENST00000398868.7_1_11:63426327-63426598:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 531.3340454101562 3 531.268809 1590.7846 NaN NaN NaN NaN NaN NaN NaN 162 1 162 161.5 162.5 0 0 0 0 0.22632 1 32547 32547 0.00056442 0 1 27892 9487 18577 18584 27521 27521 0.012837347898994267 LNAKDSHPP 9 Unmodified _LNAKDSHPP_ 0 0 0 ENST00000545087.1_1:2143528-2143765:-|nuORF ENST00000545087.1_1:2143528-2143765:-|nuORF ENST00000545087.1_1:2143528-2143765:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2550964355469 2 489.753798 977.493044 -0.29483 -0.00014439 0.60518 0.00029639 0.31036 0.000152 489.7541028901251 18.012 2.1579 16.74 16.109 18.267 -1.2722 154 61 4 0 0 0 0.44932 1 2959 2959 22.736 1.1993 1 17771000 27893 11115 18578 18585 27522 27522 0.0033971274932582674 LNALTKDPG 9 Unmodified _LNALTKDPG_ 0 0 0 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 464.1823425292969 2 464.758549 927.502546 -0.13453 -6.2522E-05 0.018799 8.7371E-06 -0.11573 -5.3785E-05 464.7585097105316 68.75 0.49216 65.57 65.341 65.833 -3.1796 25 13 2 0 0 0 0.8319 1 13350 13350 12.532 4.6214 1 3337900 27894 6 18579 18586 27523 27523 0.035894810348509054 LNALTKDPG 9 Unmodified _LNALTKDPG_ 0 0 0 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.758549 927.502546 -0.18549 -8.6209E-05 0.52611 0.00024451 0.34062 0.0001583 464.75861508077503 65.718 0.48001 65.718 65.483 65.963 0 0.060222 0.00048743 NaN 12.532 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3440200 27895 6 18579 18586 0.035894810348509054 LNALTKDPG 9 Unmodified _LNALTKDPG_ 0 0 0 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.758549 927.502546 0.31273 0.00014534 -0.18974 -8.8184E-05 0.12298 5.7158E-05 464.75842694963467 69.254 0.58039 65.717 65.396 65.976 -3.5362 0.059252 -0.00017797 NaN 12.532 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3752100 27896 6 18579 18586 0.035894810348509054 LNALTKDPG 9 Unmodified _LNALTKDPG_ 0 0 0 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.758549 927.502546 0.33638 0.00015634 -0.021687 -1.0079E-05 0.3147 0.00014626 464.75840059974234 69.017 0.69977 65.627 65.352 66.052 -3.3903 -0.031528 -2.1758E-05 NaN 12.532 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3763100 27897 6 18579 18586 0.035894810348509054 LNARFIRNLQ 10 Unmodified _LNARFIRNLQ_ 0 0 0 nc|ENSG00000137343|Q5SQI0-3|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1;ENST00000479562.1_1_6:30613824-30614417:+|nuORF;ENSG00000137343|ENST00000330083|ATAT1 nc|ENSG00000137343|Q5SQI0-3|ATAT1 nc|ENSG00000137343|Q5SQI0-3|ATAT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7633056640625 2 622.864746 1243.71494 0.40584 0.00025278 1.558 0.00097043 1.9639 0.0012232 622.8639740595507 61.992 0.10045 58.753 58.69 58.79 -3.2395 4 2 2 0 0 0 0.91149 1 11617 11617 1.3295 0.25807 1 482370 27898 12346 18580 18587 27524 27524 0.10282992165502947 LNATHELHF 9 Unmodified _LNATHELHF_ 0 0 0 REV__EEF2K|p.A558T|1|0.31|ENSG00000103319|chr16:22266784-22266784|G/A|missense_variant REV__EEF2K|p.A558T|1|0.31|ENSG00000103319|chr16:22266784-22266784|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2762451171875 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 122.95 1 118.36 117.86 118.86 -4.5926 0 0 0 0.19692 1 23667 23667 0.37959 0 1 + 27899 13781 18581 18588 27525 27525 -0.001803118423140404 LNCFMLDLI 9 Unmodified _LNCFMLDLI_ 0 0 0 ENST00000334529.9_1_3:112184084-112184171:-|nuORF ENST00000334529.9_1_3:112184084-112184171:-|nuORF ENST00000334529.9_1_3:112184084-112184171:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2715454101562 2 541.274664 1080.53477 NaN NaN NaN NaN NaN NaN NaN 138.13 1 133.21 132.71 133.71 -4.9216 0 0 0 0.19684 1 26559 26559 0.40827 0.15679 1 27900 8794 18582 18589 27526 27526 -0.002271908780130616 LNCGTPESII 10 Unmodified _LNCGTPESII_ 0 0 0 tr|U7SMG5|U7SMG5_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01858PE=4SV=1 tr|U7SMG5|U7SMG5_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01858PE=4SV=1 tr|U7SMG5|U7SMG5_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01858PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.685546875 2 523.762975 1045.5114 NaN NaN NaN NaN NaN NaN NaN 155.73 1 150.95 150.45 151.45 -4.7791 0 0 0 0.22576 1 30957 30957 14.838 1.3304 1 27901 26008 18583 18590 27527 27527 -0.009539133909811426 LNCPTYHNPAD 11 Unmodified _LNCPTYHNPAD_ 0 0 0 ENST00000467818.1_1_21:43696971-43706199:+|nuORF;ENST00000472587.5_1_21:43696971-43716499:+|nuORF;nc|ENSG00000160179|P45844-7|ABCG1;nc|ENSG00000160179|P45844-6|ABCG1;nc|ENSG00000160179|P45844-5|ABCG1;ENSG00000160179|ENST00000398449|ABCG1;nc|ENSG00000160179|P45844-3|ABCG1;nc|ENSG00000160179|P45844-2|ABCG1;nc|ENSG00000160179|P45844|ABCG1;nc|ENSG00000160179|P45844-8|ABCG1 ENST00000467818.1_1_21:43696971-43706199:+|nuORF ENST00000467818.1_1_21:43696971-43706199:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7608032226562 2 622.771862 1243.52917 NaN NaN NaN NaN NaN NaN NaN 155.2 1 155.2 154.7 155.7 0 0 0 0 0.23087 1 31112 31112 7.609 1.4032 1 27902 5231 18584 18591 27528 27528 -0.08285198136127292 LNCSEHCDC 9 Unmodified _LNCSEHCDC_ 0 0 0 MEGF11|p.G599Wfs*42|1|0.13|ENSG00000157890|chr15:65922851-65922852|-/G|frameshift_variant;nc|ENSG00000157890|A6BM72-3|MEGF11;nc|ENSG00000157890|A6BM72-2|MEGF11;nc|ENSG00000157890|A6BM72|MEGF11;ENSG00000157890|ENST00000395614|MEGF11 MEGF11|p.G599Wfs*42|1|0.13|ENSG00000157890|chr15:65922851-65922852|-/G|frameshift_variant MEGF11|p.G599Wfs*42|1|0.13|ENSG00000157890|chr15:65922851-65922852|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 512.2548828125 2 512.170069 1022.32559 NaN NaN NaN NaN NaN NaN NaN 165.22 1 160.24 159.74 160.74 -4.9811 0 0 0 0.19632 1 32276 32276 0.0033805 0 1 27903 5144 18585 18592 27529 27529 -0.18468382173603004 LNDEVNPYM 9 Unmodified _LNDEVNPYM_ 0 0 0 REV__tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1 REV__tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7806396484375 2 547.744782 1093.47501 -0.32467 -0.00017784 0.16428 8.9984E-05 -0.16039 -8.7851E-05 548.2466252933422 108.41 0.52209 104.09 103.83 104.35 -4.32 23 14 2 0 0 0 0.27865 1 21388 21388 41.84 18.691 1 1039700 + 27904 25269 18586 18593 27530 27530 -0.06798790287712109 LNDEVNPYM 9 Unmodified _LNDEVNPYM_ 0 0 0 REV__tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1 REV__tr|U7T0G8|U7T0G8_FUSNUShikimatedehydrogenase(NADP(+))OS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroEPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7901000976562 2 547.744782 1093.47501 0.75677 0.00041452 -0.83304 -0.00045629 -0.076271 -4.1777E-05 548.2461038300715 108.17 0.6938 104.03 103.81 104.5 -4.135 29 19 2 0 0 0 0.27865 1 20864 20864 41.84 20.093 1 947700 + 27905 25269 18586 18593 27531 27531 -0.06798790287712109 LNDEYVVIAQP 11 Unmodified _LNDEYVVIAQP_ 0 0 0 nc|ENSG00000108231|O95970-2|LGI1;nc|ENSG00000108231|O95970-3|LGI1;ENSG00000108231|ENST00000371418|LGI1 nc|ENSG00000108231|O95970-2|LGI1 nc|ENSG00000108231|O95970-2|LGI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7503662109375 2 630.82716 1259.63977 0.40564 0.00025589 0.28179 0.00017776 0.68744 0.00043366 631.3271009412728 144.06 0.13605 144.06 143.97 144.1 0 5 3 2 0 0 0 0.93546 1 28770 28770 4.897 0 1 3784400 27906 2462 18587 18594 27532 27532 0.02033345123777508 LNDSEKQPY 9 Unmodified _LNDSEKQPY_ 0 0 0 ENSG00000029993|ENST00000325307|HMGB3;ENST00000560051.1_1_14:103830578-103830779:-|nuORF ENSG00000029993|ENST00000325307|HMGB3 ENSG00000029993|ENST00000325307|HMGB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.780029296875 2 547.261653 1092.50875 0.28357 0.00015519 0.13463 7.3678E-05 0.4182 0.00022887 547.2616466053626 126.58 0.97826 121.78 121.32 122.3 -4.7958 54 27 3 0 0 0 0.66537 1 24217 24217 8.5933 0.68312 1 6718200 27907 1153 18588 18595 27533 27533 -0.03380045524272646 LNDSGHTRF 9 Unmodified _LNDSGHTRF_ 0 0 0 ENST00000374723.5_1_9:108120676-108123538:+|nuORF ENST00000374723.5_1_9:108120676-108123538:+|nuORF ENST00000374723.5_1_9:108120676-108123538:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.701171875 2 523.75433 1045.49411 NaN NaN NaN NaN NaN NaN NaN 158.72 1 153.45 152.95 153.95 -5.2748 0 0 0 0.23508 1 30806 30806 10.824 2.2306 1 27908 9227 18589 18596 27534 27534 -0.026820728817710915 LNDWFEQLN 9 Unmodified _LNDWFEQLN_ 0 0 0 REV__ENSG00000169710|ENST00000306749|FASN REV__ENSG00000169710|ENST00000306749|FASN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2739868164062 2 589.77747 1177.54039 0.35422 0.00020891 0.57097 0.00033675 0.92519 0.00054565 589.7774231099944 159.47 0.69608 159.47 159.02 159.72 0 51 19 4 0 0 0 0.87511 1 31931 31931 1.6526 0 1 9511600 + 27909 18116 18590 18597 27535 27535 -0.04128052770306567 LNEDVDQSY 9 Unmodified _LNEDVDQSY_ 0 0 0 REV__CCDC38|p.M394Cfs*7|1|0.3|ENSG00000165972|chr12:95878309-95878309|T/-|frameshift_variant REV__CCDC38|p.M394Cfs*7|1|0.3|ENSG00000165972|chr12:95878309-95878309|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.284423828125 2 541.735468 1081.45638 0.094152 5.1006E-05 -0.056164 -3.0426E-05 0.037988 2.058E-05 541.735434056358 81.991 0.82368 78.146 77.672 78.496 -3.8449 37 23 2 0 0 0 0.80264 1 15525 15525 12.241 0 1 2880200 + 27910 13297 18591 18598 27536 27536 -0.08108628657873851 LNESTVLLISD 11 Unmodified _LNESTVLLISD_ 0 0 0 REV__UBOX5|p.V310*|1|0.21|ENSG00000185019|chr20:3121711-3121711|C/-|frameshift_variant REV__UBOX5|p.V310*|1|0.21|ENSG00000185019|chr20:3121711-3121711|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2728881835938 2 602.326993 1202.63943 NaN NaN NaN NaN NaN NaN NaN 155.76 1 150.47 149.97 150.97 -5.2854 0 0 0 0.22683 1 30211 30211 10.8 1.2555 1 + 27911 18930 18592 18599 27537 27537 0.04621925403921523 LNEVSQKY 8 Unmodified _LNEVSQKY_ 0 0 0 REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 328.0239562988281 3 327.50643 979.497461 -1.047 -0.0003429 1.1382 0.00037278 0.091257 2.9887E-05 327.50670890623445 23.817 0.44736 22.029 21.844 22.291 -1.7886 27 12 3 0 0 0 1.0249 1 3832 3832 1.6526 0 1 1414600 + 27912 13708 18593 18600 27538 27538 0.006891771722393969 LNEVSQKY 8 Unmodified _LNEVSQKY_ 0 0 0 REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 327.50643 979.497461 -0.44579 -0.000146 0.59553 0.00019504 0.14974 4.9041E-05 327.50655077938745 22.131 0.31205 22.131 21.981 22.293 0 0.051313 -0.00026353 NaN 1.6526 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1585600 + 27913 13708 18593 18600 0.006891771722393969 LNFHNNNQED 10 Unmodified _LNFHNNNQED_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7603149414062 2 622.768165 1243.52178 NaN NaN NaN NaN NaN NaN NaN 159.82 1 155.02 154.52 155.52 -4.7952 0 0 0 2.8426 1 31777 31777 0.0013812 0 1 27914 2454 18594 18601 27539 27539 -0.09024214412170295 LNFLLLHLL 9 Unmodified _LNFLLLHLL_ 0 0 0 NOV|p.T19N|1|0.09|ENSG00000136999|chr8:119416588-119416588|C/A|missense_variant NOV|p.T19N|1|0.09|ENSG00000136999|chr8:119416588-119416588|C/A|missense_variant NOV|p.T19N|1|0.09|ENSG00000136999|chr8:119416588-119416588|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7742309570312 2 548.349877 1094.6852 0.50706 0.00027805 2.0703 0.0011352 2.5773 0.0014133 548.3510174044251 159.03 0.21609 153.76 153.69 153.91 -5.2712 6 5 2 0 0 0 0.87258 1 30884 30884 4.3292 0 1 1306100 27915 12704 18595 18602 27540 27540 0.14164660167489274 LNFLQALGYL 10 Unmodified _LNFLQALGYL_ 0 0 0 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3388671875 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 134.7 1 134.7 134.2 135.2 0 0 0 0 0.22576 1 26668 26668 14.838 0.43289 1 27916 6474 18596 18603 27541 27541 0.06935175545504535 LNFPKETKF 9 Unmodified _LNFPKETKF_ 0 0 0 tr|U7SLK0|U7SLK0_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01956PE=4SV=1 tr|U7SLK0|U7SLK0_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01956PE=4SV=1 tr|U7SLK0|U7SLK0_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01956PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2080078125 3 375.209725 1122.60735 -1.6769 -0.00062918 -1.0706 -0.00040168 -2.7474 -0.0010309 375.2092810275563 19.605 0.45236 17.97 17.775 18.227 -1.6351 29 12 4 0 0 0 0.65037 1 3007 3007 0.073264 0.029476 1 3214700 27917 25986 18597 18604 27542 27542 0.05094602511439916 LNFVAMILIPL 11 Unmodified _LNFVAMILIPL_ 0 0 0 REV__ENST00000439491.2_1_7:5338995-5342941:+|nuORF REV__ENST00000439491.2_1_7:5338995-5342941:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7694091796875 2 622.377778 1242.741 0.65857 0.00040988 -4.1885 -0.0026068 -3.5299 -0.0021969 622.3746992646356 162.33 0.1707 157.14 156.99 157.16 -5.1878 5 4 2 0 0 0 0.76394 1 31488 31488 0.11104 0 1 3566400 + 27918 17698 18598 18605 27543 27543 0.1293412529280431 LNFYKEIEREE 11 Unmodified _LNFYKEIEREE_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2699890136719 3 490.580546 1468.71981 -0.57503 -0.0002821 -1.1298 -0.00055427 -1.7048 -0.00083636 490.5800299253799 14.12 0.5587 12.947 12.792 13.351 -1.173 35 15 4 0 0 0 0.96224 1 1950 1950 0.50596 0.051438 1 17676000 27919 4836 18599 18606 27544 27544 0.004197867269567723 LNGLRWGF 8 Unmodified _LNGLRWGF_ 0 0 0 ENST00000559993.1_1_14:74125624-74139689:+|nuORF ENST00000559993.1_1_14:74125624-74139689:+|nuORF ENST00000559993.1_1_14:74125624-74139689:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76568603515625 2 481.763969 961.513385 NaN NaN NaN NaN NaN NaN NaN 159.56 1 154.28 153.78 154.78 -5.2712 0 0 0 0.17894 1 30958 30958 32.117 0 1 27920 11279 18600 18607 27545 27545 0.031089281998106344 LNGNSRKLDRS 11 Unmodified _LNGNSRKLDRS_ 0 0 0 FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant;FAM111B|p.I283Lfs*16|1|0.32|ENSG00000189057|chr11:59124938-59124938|A/-|frameshift_variant;FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant;FAM111B|p.N499Tfs*10|1|0.11|ENSG00000189057|chr11:59125589-59125589|A/-|frameshift_variant;nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.756103515625 2 630.344375 1258.6742 0.6241 0.0003934 3.4988 0.0022055 4.1229 0.0025988 630.8478101255665 153.81 0.13904 148.59 148.48 148.62 -5.2209 5 3 2 0 0 0 0.94841 1 29798 29798 10.8 1.4164 1 538850 27921 7214 18601 18608 27546 27546 0.05520606055210919 LNGRFCLG 8 Unmodified _LNGRFCLG_ 0 0 0 REV__ENST00000414386.5_1_6:41491709-41491922:-|nuORF REV__ENST00000414386.5_1_6:41491709-41491922:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 440.2197265625 2 440.228905 878.443257 NaN NaN NaN NaN NaN NaN NaN 84.194 1 80.285 79.785 80.785 -3.9093 0 0 0 0.21486 1 16002 16002 5.7604 0 1 + 27922 21445 18602 18609 27547 27547 -0.0008269346031966052 LNHIQTIIAE 10 Unmodified _LNHIQTIIAE_ 0 0 0 REV__ENST00000473006.1_1_6:3231803-3231938:-|nuORF REV__ENST00000473006.1_1_6:3231803-3231938:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3194580078125 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 139.11 1 134.26 133.76 134.76 -4.8492 0 0 0 0.22566 1 26816 26816 16.149 3.1066 1 + 27923 22067 18603 18610 27548 27548 0.06533086051808823 LNHLCNWG 8 Unmodified _LNHLCNWG_ 0 0 0 REV__ENSG00000213694|ENST00000358157|S1PR3 REV__ENSG00000213694|ENST00000358157|S1PR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7247009277344 2 478.723987 955.433421 NaN NaN NaN NaN NaN NaN NaN 165.92 1 161.13 160.63 161.63 -4.7898 0 0 0 0.21486 1 33272 33272 12.532 3.1841 1 + 27924 19644 18604 18611 27549 27549 -0.04607881465688024 LNIACNIGTY 10 Unmodified _LNIACNIGTY_ 0 0 0 REV__EYS|p.E1002A|1|0.12|ENSG00000188107|chr6:64822810-64822810|T/G|missense_variant REV__EYS|p.E1002A|1|0.12|ENSG00000188107|chr6:64822810-64822810|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.271484375 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 105.92 1 101.66 101.16 102.16 -4.2638 0 0 0 0.19577 1 20851 20851 29.082 2.8134 1 + 27925 23509 18605 18612 27550 27550 -0.009662071540560646 LNIIRLPKK 9 Unmodified _LNIIRLPKK_ 0 0 0 REV__GAB2|p.P512Lfs*19|1|0.36|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant REV__GAB2|p.P512Lfs*19|1|0.36|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7798461914062 2 547.874051 1093.73355 NaN NaN NaN NaN NaN NaN NaN 12.079 1 10.95 10.45 11.45 -1.1293 0 0 0 0.23508 1 1463 1463 2.0598 0 1 + 27926 14023 18606 18613 27551 27551 0.19043153807365343 LNIRGHILE 9 Unmodified _LNIRGHILE_ 0 0 0 ENST00000599227.5_2_19:58774240-58774528:+|nuORF ENST00000599227.5_2_19:58774240-58774528:+|nuORF ENST00000599227.5_2_19:58774240-58774528:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2720336914062 2 532.81419 1063.61383 NaN NaN NaN NaN NaN NaN NaN 174.19 1 169.31 168.81 169.81 -4.8845 0 0 0 0.23508 1 34602 34602 10.824 2.6684 1 27927 11691 18607 18614 27552 27552 0.08456540462793782 LNISANSPY 9 Unmodified _LNISANSPY_ 0 0 0 ABCA12|p.T913Sfs*16|1|0.03|ENSG00000144452|chr2:215001683-215001684|-/C|frameshift_variant;ABCA12|p.I957Sfs*3|1|0.24|ENSG00000144452|chr2:215001014-215001015|-/C|frameshift_variant;ABCA12|p.N1173Kfs*27|1|0.28|ENSG00000144452|chr2:214990807-214990808|-/T|frameshift_variant;ABCA12|p.T1534Nfs*8|1|0.1|ENSG00000144452|chr2:214980622-214980623|-/T|frameshift_variant;ABCA12|p.N1671Kfs*2|1|0.24|ENSG00000144452|chr2:214978431-214978432|-/T|frameshift_variant;ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant;ABCA12|p.F2109Lfs*25|2|0.16|ENSG00000144452|chr2:214955268-214955268|A/-|frameshift_variant;nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12 ABCA12|p.T913Sfs*16|1|0.03|ENSG00000144452|chr2:215001683-215001684|-/C|frameshift_variant ABCA12|p.T913Sfs*16|1|0.03|ENSG00000144452|chr2:215001683-215001684|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2645263671875 2 489.748182 977.481811 -0.072407 -3.5461E-05 3.1551 0.0015452 3.0827 0.0015097 489.7483120516929 61.031 0.13853 57.797 57.69 57.829 -3.2336 5 3 2 0 0 0 0.7906 1 11413 11413 13.042 1.4022 1 370060 27928 7 18608 18615 27553 27553 -0.007831093448203319 LNIVLGFPRG 10 Unmodified _LNIVLGFPRG_ 0 0 0 REV__nc|ENSG00000124783|P43307-2|SSR1 REV__nc|ENSG00000124783|P43307-2|SSR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7805786132812 2 543.326934 1084.63931 0.18487 0.00010044 0.032774 1.7807E-05 0.21764 0.00011825 543.3267607868544 157.31 0.76932 152.03 151.48 152.25 -5.2854 40 21 3 0 0 0 0.48196 1 30445 30445 0.063865 0 1 2261500 + 27929 15795 18609 18616 27554 27554 0.10038014985207155 LNKACPQSAY 10 Unmodified _LNKACPQSAY_ 0 0 0 REV__FOXN2|p.I375Nfs*3|1|0.2|ENSG00000170802|chr2:48375265-48375266|-/A|frameshift_variant REV__FOXN2|p.I375Nfs*3|1|0.2|ENSG00000170802|chr2:48375265-48375266|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7687377929688 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 141.67 1 141.67 141.17 142.17 0 0 0 0 0.22588 1 28235 28235 10.824 2.2306 1 + 27930 23548 18610 18617 27555 27555 -0.020390912968423436 LNKFAVKV 8 Unmodified _LNKFAVKV_ 0 0 0 tr|U7SQV7|U7SQV7_FUSNUSmallribosomalsubunitproteinuS9OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsIPE=3SV=1 tr|U7SQV7|U7SQV7_FUSNUSmallribosomalsubunitproteinuS9OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsIPE=3SV=1 tr|U7SQV7|U7SQV7_FUSNUSmallribosomalsubunitproteinuS9OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsIPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2460632324219 2 459.792195 917.569838 -0.44499 -0.0002046 1.3109 0.00060272 0.86587 0.00039812 459.792754701121 23.289 0.30336 21.5 21.324 21.628 -1.7886 13 8 2 0 0 0 1.0147 1 3759 3759 9.3474 0 1 684620 27931 26066 18611 18618 27556 27556 0.10775556036469425 LNKLVLKKISK 11 Unmodified _LNKLVLKKISK_ 0 0 0 REV__nc|ENSG00000110713|P52948-6|NUP98 REV__nc|ENSG00000110713|P52948-6|NUP98 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 642.3871459960938 2 642.442298 1282.87004 0.41656 0.00026762 1.8295 0.0011753 2.246 0.0014429 642.9446885131213 162.32 0.1348 162.32 162.24 162.37 0 5 3 2 0 0 0 0.96209 1 32606 32606 0.30703 0 1 10405000 + 27932 15212 18612 18619 27557 27557 0.23992223247205402 LNKSPEKTS 9 Unmodified _LNKSPEKTS_ 0 0 0 REV__ENST00000554413.1_1_12:97295953-97296385:-|nuORF REV__ENST00000554413.1_1_12:97295953-97296385:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 335.2620544433594 3 335.185468 1002.53457 NaN NaN NaN NaN NaN NaN NaN 95.802 1 91.752 91.252 92.252 -4.0496 0 0 0 0.23508 1 18781 18781 4.5289 0.33936 1 + 27933 22972 18613 18620 27558 27558 0.03340848718016787 LNKTFSFHR 9 Unmodified _LNKTFSFHR_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|215|1|anti-sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|215|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.8785705566406 3 383.876969 1148.60908 NaN NaN NaN NaN NaN NaN NaN 165.86 1 160.91 160.41 161.41 -4.9484 0 0 0 0.17788 1 32446 32446 2.6312 2.5034 1 + 27934 23621 18614 18621 27559 27559 0.04071656320047623 LNLKWSCFA 9 Unmodified _LNLKWSCFA_ 0 0 0 SLC11A2|p.R408C|1|0.21|ENSG00000110911|chr12:50992315-50992315|G/A|missense_variant SLC11A2|p.R408C|1|0.21|ENSG00000110911|chr12:50992315-50992315|G/A|missense_variant SLC11A2|p.R408C|1|0.21|ENSG00000110911|chr12:50992315-50992315|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2806396484375 2 541.278595 1080.54264 NaN NaN NaN NaN NaN NaN NaN 129.56 1 129.56 129.06 130.06 0 0 0 0 0.23508 1 25596 25596 10.824 0.75 1 27935 25666 18615 18622 27560 27560 0.0055870443377443735 LNLLCKRNI 9 Unmodified _LNLLCKRNI_ 0 0 0 REV__nc|ENSG00000100629|Q6ZU80-3|CEP128 REV__nc|ENSG00000100629|Q6ZU80-3|CEP128 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7957763671875 2 543.826243 1085.63793 NaN NaN NaN NaN NaN NaN NaN 152.2 1 152.2 151.7 152.7 0 0 0 0 0.22251 1 30483 30483 16.942 4.7016 1 + 27936 23970 18616 18623 27561 27561 0.09854057624806956 LNLLVMGF 8 Unmodified _LNLLVMGF_ 0 0 0 REV__ENSG00000118402|ENST00000369816|ELOVL4 REV__ENSG00000118402|ENST00000369816|ELOVL4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76031494140625 2 453.759507 905.50446 NaN NaN NaN NaN NaN NaN NaN 5.9762 1 4.9362 4.4362 5.4362 -1.04 0 0 0 0.2396 1 361 361 0.12286 0 1 + 27937 15550 18617 18624 27562 27562 0.0479281851912674 LNLSKYQNV 9 Unmodified _LNLSKYQNV_ 0 0 0 ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201904296875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 107.41 1 107.41 106.91 107.91 0 0 0 0 0.23508 1 21122 21122 8.1555 1.4324 1 27938 7018 18618 18625 27563 27563 0.046171279889904326 LNLSKYQNV 9 Unmodified _LNLSKYQNV_ 0 0 0 ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013854980469 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112.23 1 107.79 107.29 108.29 -4.4386 0 0 0 0.23508 1 22117 22117 4.897 0.36815 1 27939 7018 18618 18625 27564 27564 0.046171279889904326 LNLSKYQNV 9 Unmodified _LNLSKYQNV_ 0 0 0 ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112.1 1 107.86 107.36 108.36 -4.2404 0 0 0 0.23508 1 21582 21582 8.1555 3.2585 1 27940 7018 18618 18625 27565 27565 0.046171279889904326 LNLWKKFKHNR 11 Unmodified _LNLWKKFKHNR_ 0 0 0 tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1 tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1 tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3685302734375 2 742.43587 1482.85719 NaN NaN NaN NaN NaN NaN NaN 121.37 1 116.68 116.18 117.18 -4.6873 0 0 0 0.23379 1 23301 23301 5.2969 2.3016 1 27941 26175 18619 18626 27566 27566 0.13507204907705272 LNLWKKFKHNR 11 Unmodified _LNLWKKFKHNR_ 0 0 0 tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1 tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1 tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3888549804688 2 742.43587 1482.85719 NaN NaN NaN NaN NaN NaN NaN 165.81 1 160.83 160.33 161.33 -4.9811 0 0 0 0.22632 1 32445 32445 0.026206 0 1 27942 26175 18619 18626 27567 27567 0.13507204907705272 LNLWRQRWSQP 11 Unmodified _LNLWRQRWSQP_ 0 0 0 ENST00000284320.5_1_3:100119564-100119939:-|nuORF ENST00000284320.5_1_3:100119564-100119939:-|nuORF ENST00000284320.5_1_3:100119564-100119939:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4013671875 2 742.399484 1482.78442 NaN NaN NaN NaN NaN NaN NaN 171.53 1 166.62 166.12 167.12 -4.9149 0 0 0 0.23379 1 33979 33979 5.2969 0.39987 1 27943 8454 18620 18627 27568 27568 0.06233451114280797 LNLWRQRWSQP 11 Unmodified _LNLWRQRWSQP_ 0 0 0 ENST00000284320.5_1_3:100119564-100119939:-|nuORF ENST00000284320.5_1_3:100119564-100119939:-|nuORF ENST00000284320.5_1_3:100119564-100119939:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3997192382812 2 742.399484 1482.78442 NaN NaN NaN NaN NaN NaN NaN 165.03 1 160.08 159.58 160.58 -4.9484 0 0 0 0.23018 1 32219 32219 8.1555 3.2585 1 27944 8454 18620 18627 27569 27569 0.06233451114280797 LNLYYERRWEQ 11 Unmodified _LNLYYERRWEQ_ 0 0 0 nc|ENSG00000167113|Q9Y3A0-2|COQ4;ENSG00000167113|ENST00000300452|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3926391601562 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 32.888 1 32.888 32.388 33.388 0 0 0 0 0.23698 1 5988 5988 0.30703 0 1 27945 5787 18621 18628 27570 27570 0.011940039493310906 LNLYYERRWEQ 11 Unmodified _LNLYYERRWEQ_ 0 0 0 nc|ENSG00000167113|Q9Y3A0-2|COQ4;ENSG00000167113|ENST00000300452|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3967895507812 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 140.55 1 140.55 140.05 141.05 0 0 0 0 0.23698 1 27987 27987 1.3295 0 1 27946 5787 18621 18628 27571 27571 0.011940039493310906 LNLYYERRWEQ 11 Unmodified _LNLYYERRWEQ_ 0 0 0 nc|ENSG00000167113|Q9Y3A0-2|COQ4;ENSG00000167113|ENST00000300452|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3963623046875 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 15.799 1 14.584 14.084 15.084 -1.2159 0 0 0 0.23698 1 2454 2454 0.35063 0.043601 1 27947 5787 18621 18628 27572 27572 0.011940039493310906 LNMFLLEY 8 Unmodified _LNMFLLEY_ 0 0 0 REV__NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant REV__NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2626342773438 2 521.767529 1041.5205 0.21089 0.00011004 -1.3618 -0.00071057 -1.151 -0.00060053 521.7672221189309 149.87 0.10379 149.87 149.8 149.91 0 4 2 2 0 0 0 0.73936 1 30004 30004 8.5933 3.2964 1 668930 + 27948 16783 18622 18629 27573 27573 0.0014047996537556173 LNMFLLEY 8 Unmodified _LNMFLLEY_ 0 0 0 REV__NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant REV__NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.767529 1041.5205 0.21089 0.00011004 -1.3618 -0.00071057 -1.151 -0.00060053 521.7672221189309 149.87 0.10379 149.87 149.8 149.91 0 0 0 NaN 8.5933 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 668930 + 27949 16783 18622 18629 0.0014047996537556173 LNMKRNKTF 9 Unmodified _LNMKRNKTF_ 0 0 0 REV__tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1 REV__tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.32275390625 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 145.01 1 140.07 139.57 140.57 -4.9445 0 0 0 0.23508 1 28025 28025 9.3831 0.63772 1 + 27950 25316 18623 18630 27574 27574 0.058808696194319054 LNMMPMSTY 9 Unmodified _LNMMPMSTY_ 0 0 0 REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7732543945312 2 544.234681 1086.45481 0.33858 0.00018427 1.2785 0.00069583 1.6171 0.0008801 544.7353352451805 148.5 0.17673 148.5 148.36 148.54 0 5 4 2 0 0 0 0.8319 1 29706 29706 4.3292 0 1 2282500 + 27951 17100 18624 18631 27575 27575 -0.08496000543482296 LNNEGSLNLL 10 Unmodified _LNNEGSLNLL_ 0 0 0 nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA;nc|ENSG00000143776|Q5VT25-3|CDC42BPA nc|ENSG00000143776|Q5VT25-4|CDC42BPA nc|ENSG00000143776|Q5VT25-4|CDC42BPA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7922973632812 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 80.514 1 76.826 76.326 77.326 -3.6879 0 0 0 0.22527 1 15351 15351 21.537 1.0834 1 27952 4518 18625 18632 27576 27576 0.032325202637593975 LNNKKEEIY 9 Unmodified _LNNKKEEIY_ 0 0 0 REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant REV__RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3115234375 2 575.808771 1149.60299 0.18839 0.00010848 -0.13514 -7.7812E-05 0.053257 3.0666E-05 575.8086547387334 60.741 0.73204 57.427 57.05 57.782 -3.3139 60 20 4 0 0 0 0.69259 1 11246 11246 6.7232 0 1 27319000 + 27953 16146 18626 18633 27577 27577 0.034170932978668134 LNNKVTEIEFG 11 Unmodified _LNNKVTEIEFG_ 0 0 0 REV__TRRAP-ASNS|1|fusion REV__TRRAP-ASNS|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 632.638427734375 2 632.33261 1262.65067 0.41312 0.00026123 -2.0039 -0.0012671 -1.5908 -0.0010059 632.8330611767257 165.36 0.20392 165.36 165.19 165.39 0 7 5 2 0 0 0 0.95894 1 33497 33497 8.7454 0 1 23472000 + 27954 25489 18627 18634 27578 27578 0.02984747498021534 LNNNLSLKY 9 Unmodified _LNNNLSLKY_ 0 0 0 ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant;nc|ENSG00000165309|Q5W041-3|ARMC3;ARMC3|p.E689Rfs*20|1|0.17|ENSG00000165309|chr10:23030607-23030608|-/A|frameshift_variant;nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3 ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant;nc|ENSG00000165309|Q5W041-4|ARMC3 nc|ENSG00000165309|Q5W041-4|ARMC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112.53 1 108 107.5 108.5 -4.5259 0 0 0 0.23508 1 21597 21597 4.897 0.95262 1 27955 222;5617 18628 18635 27579 27579 0.0461712798901317 LNNNLSLKY 9 Unmodified _LNNNLSLKY_ 0 0 0 ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant;nc|ENSG00000165309|Q5W041-3|ARMC3;ARMC3|p.E689Rfs*20|1|0.17|ENSG00000165309|chr10:23030607-23030608|-/A|frameshift_variant;nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3 ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant;nc|ENSG00000165309|Q5W041-4|ARMC3 nc|ENSG00000165309|Q5W041-4|ARMC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 110.52 1 106.29 105.79 106.79 -4.2289 0 0 0 0.23508 1 21271 21271 8.1555 0.54658 1 27956 222;5617 18628 18635 27580 27580 0.0461712798901317 LNNNLSLKY 9 Unmodified _LNNNLSLKY_ 0 0 0 ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant;nc|ENSG00000165309|Q5W041-3|ARMC3;ARMC3|p.E689Rfs*20|1|0.17|ENSG00000165309|chr10:23030607-23030608|-/A|frameshift_variant;nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3 ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant;nc|ENSG00000165309|Q5W041-4|ARMC3 nc|ENSG00000165309|Q5W041-4|ARMC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013244628906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 111.89 1 107.66 107.16 108.16 -4.2289 0 0 0 0.23508 1 21539 21539 4.897 0 1 27957 222;5617 18628 18635 27581 27581 0.0461712798901317 LNNNLSLKY 9 Unmodified _LNNNLSLKY_ 0 0 0 ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant;nc|ENSG00000165309|Q5W041-3|ARMC3;ARMC3|p.E689Rfs*20|1|0.17|ENSG00000165309|chr10:23030607-23030608|-/A|frameshift_variant;nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3 ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant;nc|ENSG00000165309|Q5W041-4|ARMC3 nc|ENSG00000165309|Q5W041-4|ARMC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112.33 1 108.06 107.56 108.56 -4.2725 0 0 0 0.23508 1 21629 21629 4.897 0 1 27958 222;5617 18628 18635 27582 27582 0.0461712798901317 LNNPCTSTQEP 11 Unmodified _LNNPCTSTQEP_ 0 0 0 nc|ENSG00000169946|Q8WW38-2|ZFPM2;ENSG00000169946|ENST00000407775|ZFPM2 nc|ENSG00000169946|Q8WW38-2|ZFPM2 nc|ENSG00000169946|Q8WW38-2|ZFPM2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2725219726562 2 602.269152 1202.52375 NaN NaN NaN NaN NaN NaN NaN 155.98 1 150.72 150.22 151.22 -5.2526 0 0 0 0.23087 1 30248 30248 7.609 0.88579 1 27959 6024 18629 18636 27583 27583 -0.06940921718592108 LNNRCILQL 9 Unmodified _LNNRCILQL_ 0 0 0 ENST00000369244.6_1_6:99374434-99374488:-|nuORF ENST00000369244.6_1_6:99374434-99374488:-|nuORF ENST00000369244.6_1_6:99374434-99374488:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7763061523438 2 543.808051 1085.60155 0.49782 0.00027072 1.5601 0.00084842 2.058 0.0011191 543.8073789809805 156.82 0.17226 151.55 151.45 151.62 -5.2712 6 4 2 0 0 0 0.8319 1 30413 30413 7.9102 0.62092 1 498880 27960 9114 18630 18637 27584 27584 0.06217180728117455 LNNSEVKLF 9 Unmodified _LNNSEVKLF_ 0 0 0 ENSG00000176895|ENST00000641490|OR51A7 ENSG00000176895|ENST00000641490|OR51A7 ENSG00000176895|ENST00000641490|OR51A7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28564453125 2 532.292756 1062.57096 0.73259 0.00038995 -1.9871 -0.0010577 -1.2545 -0.00066775 532.2920836572855 88.233 0.59584 84.238 83.903 84.499 -3.9953 26 16 3 0 0 0 0.40602 1 16837 16837 25.399 4.9457 1 1516500 27961 6486 18631 18638 27585 27585 0.04217725614716983 LNNSEVKLF 9 Unmodified _LNNSEVKLF_ 0 0 0 ENSG00000176895|ENST00000641490|OR51A7 ENSG00000176895|ENST00000641490|OR51A7 ENSG00000176895|ENST00000641490|OR51A7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.292756 1062.57096 -0.022231 -1.1834E-05 -0.55619 -0.00029606 -0.57842 -0.00030789 532.2928021979983 88.02 0.46679 84.228 84.018 84.485 -3.7926 -0.026102 0.00061865 NaN 25.399 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1403500 27962 6486 18631 18638 0.04217725614716983 LNNSEVKLF 9 Unmodified _LNNSEVKLF_ 0 0 0 ENSG00000176895|ENST00000641490|OR51A7 ENSG00000176895|ENST00000641490|OR51A7 ENSG00000176895|ENST00000641490|OR51A7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.292756 1062.57096 0.22338 0.0001189 -0.69368 -0.00036924 -0.4703 -0.00025034 532.2927209179236 88.046 0.5915 84.296 83.909 84.5 -3.7501 0.042067 0.00047228 NaN 25.399 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2672400 27963 6486 18631 18638 0.04217725614716983 LNPAGGAAA 9 Unmodified _LNPAGGAAA_ 0 0 0 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3919067382812 1 741.388979 740.381703 0.52413 0.00038858 -0.21883 -0.00016224 0.3053 0.00022635 741.3888398080288 42.653 0.32394 39.934 39.768 40.092 -2.7191 12 8 2 0 0 0 0.74257 1 7994 7994 4.3292 0 1 1199900 + 27964 24061 18632 18639 27586 27586 0.0011269811203646896 LNPAGGAAA 9 Unmodified _LNPAGGAAA_ 0 0 0 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 REV__nc|ENSG00000138443|Q9NYB9-4|ABI2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 741.388979 740.381703 0.52413 0.00038858 -0.21883 -0.00016224 0.3053 0.00022635 741.3888398080288 42.653 0.32394 39.934 39.768 40.092 -2.7191 0.0058163 -1.4482E-05 NaN 4.3292 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1199900 + 27965 24061 18632 18639 0.0011269811203646896 LNPDEKLHL 9 Unmodified _LNPDEKLHL_ 0 0 0 REV__nc|ENSG00000163946|Q9UK61-2|TASOR REV__nc|ENSG00000163946|Q9UK61-2|TASOR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 110.8 1 106.38 105.88 106.88 -4.4231 0 0 0 0.23508 1 21827 21827 6.6304 2.4409 1 + 27966 17631 18633 18640 27587 27587 0.0461712798901317 LNPDEKLHL 9 Unmodified _LNPDEKLHL_ 0 0 0 REV__nc|ENSG00000163946|Q9UK61-2|TASOR REV__nc|ENSG00000163946|Q9UK61-2|TASOR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 110.29 1 106.11 105.61 106.61 -4.1826 0 0 0 0.23508 1 21227 21227 6.6304 2.1015 1 + 27967 17631 18633 18640 27588 27588 0.0461712798901317 LNPFHRCA 8 Unmodified _LNPFHRCA_ 0 0 0 REV__ENST00000588216.5_3_19:12834613-12834700:-|nuORF REV__ENST00000588216.5_3_19:12834613-12834700:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.2309875488281 3 319.828961 956.465055 0.090027 2.8793E-05 -0.91009 -0.00029107 -0.82007 -0.00026228 319.8286035994174 60.016 1.1185 56.702 56.312 57.431 -3.3139 41 31 2 0 0 0 1.0268 1 11114 11114 1.8442 0.19162 1 1640500 + 27968 23290 18634 18641 27589 27589 -0.014918887117460145 LNPFHRCA 8 Unmodified _LNPFHRCA_ 0 0 0 REV__ENST00000588216.5_3_19:12834613-12834700:-|nuORF REV__ENST00000588216.5_3_19:12834613-12834700:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 319.828961 956.465055 -0.30891 -9.8798E-05 -0.37658 -0.00012044 -0.68549 -0.00021924 319.82873888983426 59.533 1.3883 56.6 56.122 57.51 -2.9333 -0.038502 0.00017115 NaN 1.8442 54 39 2 NaN NaN NaN NaN 0 NaN NaN 0 1100200 + 27969 23290 18634 18641 -0.014918887117460145 LNPFHRCA 8 Unmodified _LNPFHRCA_ 0 0 0 REV__ENST00000588216.5_3_19:12834613-12834700:-|nuORF REV__ENST00000588216.5_3_19:12834613-12834700:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 319.828961 956.465055 -0.54823 -0.00017534 -0.27632 -8.8374E-05 -0.82455 -0.00026372 319.82882041888877 59.838 1.1234 56.614 56.047 57.171 -3.2237 -0.024723 0.00026735 NaN 1.8442 38 31 2 NaN NaN NaN NaN 0 NaN NaN 0 1111000 + 27970 23290 18634 18641 -0.014918887117460145 LNPHHWEEHDV 11 Unmodified _LNPHHWEEHDV_ 0 0 0 REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 706.7637329101562 2 706.820732 1411.62691 NaN NaN NaN NaN NaN NaN NaN 168.82 1 163.95 163.45 164.45 -4.873 0 0 0 0.2367 1 33310 33310 2.9952 0 1 + 27971 13683 18635 18642 27590 27590 -0.06243673215772105 LNPHYGKSY 9 Unmodified _LNPHYGKSY_ 0 0 0 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1;sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1 sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2167663574219 3 360.182058 1077.52434 -0.40384 -0.00014546 0.36556 0.00013167 -0.038277 -1.3787E-05 360.1821196795659 113.37 0.95745 108.92 108.43 109.39 -4.4539 61 26 4 0 0 0 0.70121 1 22277 22277 6.1918 6.1918 1 5237000 27972 25751 18636 18643 27591 27591 -0.011317142165808036 LNPICLIFN 9 Unmodified _LNPICLIFN_ 0 0 0 REV__nc|ENSG00000196275|Q86UP8-4|GTF2IRD2 REV__nc|ENSG00000196275|Q86UP8-4|GTF2IRD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6803588867188 2 523.788795 1045.56304 0.1949 0.00010209 2.3358 0.0012234 2.5307 0.0013255 523.7909053424593 171.32 0.1673 171.32 171.17 171.33 0 5 4 2 0 0 0 0.57447 1 35277 35277 14.838 4.0388 1 6345200 + 27973 24221 18637 18644 27592 27592 0.042078750935843345 LNPLCLGHL 9 Unmodified _LNPLCLGHL_ 0 0 0 ENST00000460235.1_1_2:240024358-240029778:-|nuORF ENST00000460235.1_1_2:240024358-240029778:-|nuORF ENST00000460235.1_1_2:240024358-240029778:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2713623046875 2 490.273312 978.532072 NaN NaN NaN NaN NaN NaN NaN 170.05 1 165.18 164.68 165.68 -4.873 0 0 0 0.23508 1 33632 33632 12.532 2.3482 1 27974 10054 18638 18645 27593 27593 0.041947217793449454 LNPTTDGKYG 10 Unmodified _LNPTTDGKYG_ 0 0 0 REV__ANK3|p.K2850Rfs*29|1|0.08|ENSG00000151150|chr10:60072332-60072332|T/-|frameshift_variant;REV__ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant REV__ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.268310546875 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 84.317 1 84.317 83.817 84.817 0 0 0 0 0.22544 1 16441 16441 19.257 0 1 + 27975 13048;13047 18639 18646 27594 27594 -0.015837416616705013 LNPVDWHTL 9 Unmodified _LNPVDWHTL_ 0 0 0 REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.787353515625 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 169.4 1 169.4 168.9 169.9 0 0 0 0 0.23508 1 34769 34769 6.7232 0.51738 1 + 27976 17959 18640 18647 27595 27595 0.012608588175226032 LNQLIKLRP 9 Unmodified _LNQLIKLRP_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7930908203125 2 547.855858 1093.69716 NaN NaN NaN NaN NaN NaN NaN 15.593 1 14.371 13.871 14.871 -1.2219 0 0 0 0.23508 1 2194 2194 2.0598 0 1 + 27977 16781 18641 18648 27596 27596 0.15406276910653105 LNQLQAYYWDK 11 Unmodified _LNQLQAYYWDK_ 0 0 0 REV__APC|p.S1355Ffs*62|1|0.37|ENSG00000134982|chr5:112839653-112839654|-/TTTTT|frameshift_variant;REV__APC|p.K1454Lfs*20|1|0.81|ENSG00000134982|chr5:112839952-112839953|-/TT|frameshift_variant REV__APC|p.K1454Lfs*20|1|0.81|ENSG00000134982|chr5:112839952-112839953|-/TT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2414855957031 3 481.241865 1440.70376 0.22682 0.00010916 -0.22184 -0.00010676 0.0049872 2.4E-06 481.24186507049046 74.16 1.149 70.483 69.614 70.763 -3.6764 45 32 2 0 0 0 0.7859 1 13945 13945 5.5233 0.12058 1 1690200 + 27978 13082;13081 18642 18649 27597 27597 0.0010412528067718085 LNQPNLNYHLF 11 Unmodified _LNQPNLNYHLF_ 0 0 0 REV__PIGZ|p.T490Lfs*10|1|0.26|ENSG00000119227|chr3:196947430-196947430|C/-|frameshift_variant REV__PIGZ|p.T490Lfs*10|1|0.26|ENSG00000119227|chr3:196947430-196947430|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2406921386719 3 458.238455 1371.69353 NaN NaN NaN NaN NaN NaN NaN 88.189 1 84.439 83.939 84.939 -3.7501 0 0 0 0.20398 1 16878 16878 17.863 8.6194 1 + 27979 15573 18643 18650 27598 27598 0.02255562346113038 LNRIFSSSEHA 11 Unmodified _LNRIFSSSEHA_ 0 0 0 ENST00000487805.6_1_3:49728598-49737610:+|nuORF;ENST00000486102.5_1_3:49728598-49742525:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123 ENST00000487805.6_1_3:49728598-49737610:+|nuORF ENST00000487805.6_1_3:49728598-49737610:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7493896484375 2 630.820201 1259.62585 NaN NaN NaN NaN NaN NaN NaN 132.59 1 127.95 127.45 128.45 -4.6399 0 0 0 0.23379 1 26139 26139 5.2969 0 1 27980 10476 18644 18651 27599 27599 0.006421124153348501 LNRRYRRQPPQ 11 Unmodified _LNRRYRRQPPQ_ 0 0 0 REV__ENST00000442962.2_1_9:112295731-112296019:-|nuORF REV__ENST00000442962.2_1_9:112295731-112296019:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3949584960938 2 742.421282 1482.82801 NaN NaN NaN NaN NaN NaN NaN 173.51 1 168.72 168.22 169.22 -4.7898 0 0 0 0.23379 1 35400 35400 5.2969 2.5617 1 + 27981 21725 18645 18652 27600 27600 0.10591060611409375 LNRVRLIY 8 Unmodified _LNRVRLIY_ 0 0 0 REV__tr|U7T218|U7T218_FUSNUGlycine--tRNAligasealphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glyQPE=3SV=1 REV__tr|U7T218|U7T218_FUSNUGlycine--tRNAligasealphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glyQPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6830444335938 2 523.827101 1045.63965 0.053734 2.8147E-05 1.0839 0.00056779 1.1377 0.00059594 524.3290933371522 121.89 0.10558 117.35 117.28 117.38 -4.5476 4 2 2 0 0 0 1.0249 1 24021 24021 2.5775 0 1 911740 + 27982 25304 18646 18653 27601 27601 0.11865434705100597 LNSAWRFTQG 10 Unmodified _LNSAWRFTQG_ 0 0 0 REV__ENST00000527561.5_1_8:144766681-144776697:+|nuORF REV__ENST00000527561.5_1_8:144766681-144776697:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2621459960938 2 590.298904 1178.58326 NaN NaN NaN NaN NaN NaN NaN 140.12 1 135.27 134.77 135.77 -4.8492 0 0 0 0.22559 1 27018 27018 17.113 0.96379 1 + 27983 18719 18647 18654 27602 27602 0.0011076207774749491 LNSDLCVYCCK 11 Unmodified _LNSDLCVYCCK_ 0 0 0 ENSG00000283528|ENST00000636941|TCAF2C;nc|ENSG00000170379|A6NFQ2-3|TCAF2;nc|ENSG00000170379|A6NFQ2-2|TCAF2;TCAF2|p.A897Sfs*3|1|0.09|ENSG00000170379|chr7:143727595-143727596|-/TCAA|frameshift_variant;ENSG00000170379|ENST00000684770|TCAF2 ENSG00000283528|ENST00000636941|TCAF2C ENSG00000283528|ENST00000636941|TCAF2C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7625122070312 2 630.774702 1259.53485 NaN NaN NaN NaN NaN NaN NaN 146.65 1 141.97 141.47 142.47 -4.6868 0 0 0 0.23324 1 29089 29089 5.7319 0 1 27984 6065 18648 18655 27603 27603 -0.08453558940323092 LNSFTFTV 8 Unmodified _LNSFTFTV_ 0 0 0 REV__tr|U7SG99|U7SG99_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02230PE=3SV=1 REV__tr|U7SG99|U7SG99_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02230PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 147.74 1 147.74 147.24 148.24 0 0 0 0 0.23584 1 29554 29554 0.12286 0 1 + 27985 24870 18649 18656 27604 27604 0.0035469363187985437 LNSLDLPKG 9 Unmodified _LNSLDLPKG_ 0 0 0 REV__ENSG00000065357|ENST00000331886|DGKA REV__ENSG00000065357|ENST00000331886|DGKA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7277526855469 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 50.03 1 50.03 49.53 50.53 0 0 0 0 0.21844 1 9466 9466 18.146 1.2041 1 + 27986 14186 18650 18657 27605 27605 0.05430054068960999 LNSSCEQDCCC 11 Unmodified _LNSSCEQDCCC_ 0 0 0 REV__nc|ENSG00000168778|Q96GX1-2|TCTN2 REV__nc|ENSG00000168778|Q96GX1-2|TCTN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2860107421875 2 602.690509 1203.36646 0.398 0.00023987 2.4297 0.0014644 2.8277 0.0017042 602.6920836647038 158.87 0.13937 158.87 158.81 158.95 0 5 3 2 0 0 0 0.8912 1 31915 31915 0 0 1 2772500 + 27987 18054 18651 18658 27606 27606 -0.22708408916287226 LNSSPYRTFFF 11 Unmodified _LNSSPYRTFFF_ 0 0 0 REV__nc|ENSG00000119608|Q3B8N5|PROX2 REV__nc|ENSG00000119608|Q3B8N5|PROX2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2309265136719 3 460.231189 1377.67174 NaN NaN NaN NaN NaN NaN NaN 132.45 1 127.6 127.1 128.1 -4.8527 0 0 0 0.22632 1 25440 25440 0.026206 0 1 + 27988 15586 18652 18659 27607 27607 -0.001992424024592765 LNTANHLDAP 10 Unmodified _LNTANHLDAP_ 0 0 0 REV__ENST00000483374.1_1_22:45593059-45593908:-|nuORF REV__ENST00000483374.1_1_22:45593059-45593908:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2857666015625 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 165.75 1 160.77 160.27 161.27 -4.9811 0 0 0 0.22588 1 32423 32423 10.074 1.4806 1 + 27989 22199 18653 18660 27608 27608 -0.004609195675584488 LNTARCYQLY 10 Unmodified _LNTARCYQLY_ 0 0 0 REV__nc|ENSG00000163378|Q5NDL2-2|EOGT REV__nc|ENSG00000163378|Q5NDL2-2|EOGT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.76318359375 2 622.808248 1243.60194 NaN NaN NaN NaN NaN NaN NaN 172.74 1 172.74 172.24 173.24 0 0 0 0 0.22588 1 35678 35678 6.2058 0 1 + 27990 17566 18654 18661 27609 27609 -0.010114443427028164 LNVEFIPAY 9 Unmodified _LNVEFIPAY_ 0 0 0 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2701416015625 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 88.786 1 84.994 84.494 85.494 -3.7926 0 0 0 0.19711 1 17372 17372 2.6312 0.88896 1 + 27991 18990 18655 18662 27610 27610 0.024552247287601858 LNVILPLLQE 10 Unmodified _LNVILPLLQE_ 0 0 0 REV__ENSG00000137040|ENST00000259569|RANBP6 REV__ENSG00000137040|ENST00000259569|RANBP6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.338134765625 2 576.355357 1150.69616 NaN NaN NaN NaN NaN NaN NaN 152.75 1 152.75 152.25 153.25 0 0 0 0 0.22588 1 30601 30601 2.9952 0.26005 1 + 27992 16371 18656 18663 27611 27611 0.12684017751121246 LNVKSACHPEY 11 Unmodified _LNVKSACHPEY_ 0 0 0 REV__nc|ENSG00000127863|Q9NS68-3|TNFRSF19 REV__nc|ENSG00000127863|Q9NS68-3|TNFRSF19 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7500610351562 2 630.805705 1259.59686 NaN NaN NaN NaN NaN NaN NaN 122.26 1 117.73 117.23 118.23 -4.5305 0 0 0 0.23018 1 23537 23537 8.1555 0.8663 1 + 27993 15899 18657 18664 27612 27612 -0.0225574820528891 LNVLSTGCKF 10 Unmodified _LNVLSTGCKF_ 0 0 0 ENST00000399878.7_2_4:25749903-25749993:-|nuORF ENST00000399878.7_2_4:25749903-25749993:-|nuORF ENST00000399878.7_2_4:25749903-25749993:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.275146484375 2 541.289159 1080.56377 NaN NaN NaN NaN NaN NaN NaN 96.346 1 92.427 91.927 92.927 -3.9194 0 0 0 2.8426 1 18489 18489 0.84494 0 1 27994 9503 18658 18665 27613 27613 0.026706697426334358 LNVMPRGE 8 Unmodified _LNVMPRGE_ 0 0 0 REV__ENSG00000164291|ENST00000380009|ARSK REV__ENSG00000164291|ENST00000380009|ARSK MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23779296875 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 150.58 1 145.38 144.88 145.88 -5.1994 0 0 0 0.21486 1 29181 29181 7.9102 0.62092 1 + 27995 17668 18659 18666 27614 27614 0.003732718485480291 LNVMPRGE 8 Unmodified _LNVMPRGE_ 0 0 0 REV__ENSG00000164291|ENST00000380009|ARSK REV__ENSG00000164291|ENST00000380009|ARSK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23748779296875 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 53.089 1 49.993 49.493 50.493 -3.0954 0 0 0 0.23107 1 9811 9811 0.25148 0.12861 1 + 27996 17668 18659 18666 27615 27615 0.003732718485480291 LNVMPRGE 8 Unmodified _LNVMPRGE_ 0 0 0 REV__ENSG00000164291|ENST00000380009|ARSK REV__ENSG00000164291|ENST00000380009|ARSK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2386169433594 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 85.645 1 81.933 81.433 82.433 -3.7117 0 0 0 0.21486 1 16365 16365 9.3831 0.78985 1 + 27997 17668 18659 18666 27616 27616 0.003732718485480291 LNVTEGQIS 9 Unmodified _LNVTEGQIS_ 0 0 0 ENSG00000141540|ENST00000269346|TTYH2 ENSG00000141540|ENST00000269346|TTYH2 ENSG00000141540|ENST00000269346|TTYH2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2428894042969 2 480.753464 959.492375 0.036912 1.7745E-05 0.30488 0.00014657 0.3418 0.00016432 480.75352300601975 24.426 0.27488 22.892 22.785 23.06 -1.5342 11 7 2 0 0 0 0.50308 1 3977 3977 31.268 5.869 1 396240 27998 4380 18660 18667 27617 27617 0.011008733096218748 LNVTEQEK 8 Unmodified _LNVTEQEK_ 0 0 0 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2547302246094 2 480.753464 959.492375 1.0301 0.00049522 -1.4236 -0.00068442 -0.39355 -0.0001892 480.7527792486671 24.511 0.37711 22.862 22.683 23.06 -1.6482 15 10 2 0 0 0 0.5743 1 4262 4262 23.79 1.1317 1 303450 27999 946 18661 18668 27618 27618 0.011008733096218748 LNVTKERKKS 10 Unmodified _LNVTKERKKS_ 0 0 0 ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant;ENSG00000154262|ENST00000284425|ABCA6;ABCA6|p.N544Kfs*4|1|0.41|ENSG00000154262|chr17:69114912-69114913|-/T|frameshift_variant;nc|ENSG00000154262|Q8N139-2|ABCA6;ABCA6|p.I1144Mfs*6|1|0.11|ENSG00000154262|chr17:69091239-69091240|-/CTTTTCCC|frameshift_variant ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2899169921875 2 601.864412 1201.71427 NaN NaN NaN NaN NaN NaN NaN 169.55 1 169.55 169.05 170.05 0 0 0 0 0.22588 1 34806 34806 8.7454 0.58988 1 28000 13 18662 18669 27619 27619 0.12148152725808359 LNVTMAWK 8 Unmodified _LNVTMAWK_ 0 0 0 ENSG00000155918|ENST00000367341|RAET1L ENSG00000155918|ENST00000367341|RAET1L ENSG00000155918|ENST00000367341|RAET1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.236572265625 2 481.760038 961.505523 0.13748 6.6232E-05 2.4185 0.0011652 2.556 0.0012314 481.76076421720177 32.791 0.31221 30.56 30.507 30.819 -2.2305 9 8 2 0 0 0 0.99312 1 5989 5989 14.838 10.509 1 448510 28001 5070 18663 18670 27620 27620 0.023230328880117668 LNVTSDHMNTE 11 Unmodified _LNVTSDHMNTE_ 0 0 0 ENSG00000143971|ENST00000272342|ETAA1 ENSG00000143971|ENST00000272342|ETAA1 ENSG00000143971|ENST00000272342|ETAA1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7781372070312 2 630.779884 1259.54522 NaN NaN NaN NaN NaN NaN NaN 142.14 1 137.49 136.99 137.99 -4.655 0 0 0 0.23429 1 28092 28092 4.897 0 1 28002 4535 18664 18671 27621 27621 -0.07417536689854387 LNVYIFFM 8 Unmodified _LNVYIFFM_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.699462890625 2 523.772614 1045.53067 NaN NaN NaN NaN NaN NaN NaN 46.552 1 43.687 43.187 44.187 -2.8653 0 0 0 0.21486 1 8465 8465 9.3474 0 1 28003 9301 18665 18672 27622 27622 0.009730876905905461 LNWIKEEYG 9 Unmodified _LNWIKEEYG_ 0 0 0 ENSG00000115850|ENST00000264162|LCT ENSG00000115850|ENST00000264162|LCT ENSG00000115850|ENST00000264162|LCT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.322265625 2 576.290214 1150.56587 NaN NaN NaN NaN NaN NaN NaN 163.82 1 159.03 158.53 159.53 -4.7898 0 0 0 0.23508 1 32685 32685 7.2892 0.56607 1 28004 2889 18666 18673 27623 27623 -0.0033857824791994062 LNWIKLEY 8 Unmodified _LNWIKLEY_ 0 0 0 ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 72.37 1 72.37 71.87 72.87 0 0 0 0 0.21486 1 14033 14033 3.9444 0 1 28005 3888 18667 18674 27624 27624 0.05019217482708882 LNWIKLEY 8 Unmodified _LNWIKLEY_ 0 0 0 ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20135498046875 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 110.89 1 106.4 105.9 106.9 -4.4915 0 0 0 0.21486 1 21285 21285 3.9444 0 1 28006 3888 18667 18674 27625 27625 0.05019217482708882 LNWKRILIRHR 11 Unmodified _LNWKRILIRHR_ 0 0 0 ENSG00000156253|ENST00000493196|RWDD2B;ENST00000472184.1_1_21:30378740-30380682:-|nuORF ENSG00000156253|ENST00000493196|RWDD2B ENSG00000156253|ENST00000493196|RWDD2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.5219421386719 4 376.988844 1503.92627 -0.1207 -4.5501E-05 0.20887 7.8743E-05 0.088178 3.3242E-05 376.9888989139227 19.369 0.2536 17.972 17.848 18.102 -1.3966 9 6 2 0 0 0 0.89134 1 3210 3210 0.094841 0 1 381520 28007 5082 18668 18675 27626 27626 0.19446288927247224 LNWRRREMVRW 11 Unmodified _LNWRRREMVRW_ 0 0 0 ENSG00000130449|ENST00000252744|ZSWIM6;ENSG00000162415|ENST00000359600|ZSWIM5 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 401.7746276855469 4 401.220306 1600.85212 0.248 9.9504E-05 0.22483 9.0208E-05 0.47284 0.00018971 401.22045038973124 28.229 0.38158 26.474 26.283 26.665 -1.7552 23 10 3 0 0 0 0.66298 1 4743 4743 0.094841 0.094841 1 1467600 28008 3609 18669 18676 27627 27627 0.07572577773407829 LNWRRREMVRW 11 Unmodified _LNWRRREMVRW_ 0 0 0 ENSG00000130449|ENST00000252744|ZSWIM6;ENSG00000162415|ENST00000359600|ZSWIM5 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 401.220306 1600.85212 0.037731 1.5138E-05 0.76991 0.0003089 0.80764 0.00032404 401.471278308348 26.388 0.40468 26.388 26.09 26.495 0 -0.044161 0.00041243 NaN 0.094841 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2475100 28009 3609 18669 18676 0.07572577773407829 LNWRRREMVRW 11 Unmodified _LNWRRREMVRW_ 0 0 0 ENSG00000130449|ENST00000252744|ZSWIM6;ENSG00000162415|ENST00000359600|ZSWIM5 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 401.220306 1600.85212 -0.2031 -8.1489E-05 0.35786 0.00014358 0.15476 6.2092E-05 401.22052793767074 28.431 0.52493 26.435 26.169 26.694 -1.9962 0.0029188 -0.00024885 NaN 0.094841 34 14 4 NaN NaN NaN NaN 0 NaN NaN 0 1327500 28010 3609 18669 18676 0.07572577773407829 LNWYEDNNYK 10 Unmodified _LNWYEDNNYK_ 0 0 0 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1;ABCA1|p.L467Wfs*41|1|0.26|ENSG00000165029|chr9:104832683-104832683|A/-|frameshift_variant;ABCA1|p.G751Afs*77|1|0.1|ENSG00000165029|chr9:104827033-104827033|C/-|frameshift_variant ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7479553222656 3 453.53857 1357.59388 NaN NaN NaN NaN NaN NaN NaN 20.745 1 19.024 18.524 19.524 -1.7211 0 0 0 0.22588 1 3208 3208 3.8763 0.28927 1 28011 6 18670 18677 27628 27628 -0.07061300058489905 LNYDVEYRQKR 11 Unmodified _LNYDVEYRQKR_ 0 0 0 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3873291015625 2 742.386239 1482.75793 NaN NaN NaN NaN NaN NaN NaN 117.09 1 117.09 116.59 117.59 0 0 0 0 0.23379 1 23062 23062 5.2969 2.0156 1 + 28012 16082 18671 18678 27629 27629 0.03585717432247293 LNYFPHKY 8 Unmodified _LNYFPHKY_ 0 0 0 REV__nc|ENSG00000178297|Q7Z410|TMPRSS9 REV__nc|ENSG00000178297|Q7Z410|TMPRSS9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2772827148438 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 137.99 1 133.15 132.65 133.65 -4.84 0 0 0 0.22934 1 26589 26589 1.4551 0 1 + 28013 18599 18672 18679 27630 27630 0.0022177765142714634 LNYKLELHSS 10 Unmodified _LNYKLELHSS_ 0 0 0 nc|ENSG00000164989|Q6TFL3-3|CCDC171;ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171 nc|ENSG00000164989|Q6TFL3-3|CCDC171 nc|ENSG00000164989|Q6TFL3-3|CCDC171 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.276123046875 2 602.322045 1202.62954 NaN NaN NaN NaN NaN NaN NaN 149.05 1 149.05 148.55 149.55 0 0 0 0 0.22588 1 29838 29838 12.241 4.0851 1 28014 5586 18673 18680 27631 27631 0.036327821891973144 LNYLSCRF 8 Unmodified _LNYLSCRF_ 0 0 0 REV__TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant REV__TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 508.3065185546875 2 508.25512 1014.49569 NaN NaN NaN NaN NaN NaN NaN 147.55 1 142.49 141.99 142.99 -5.0595 0 0 0 0.21486 1 28568 28568 9.3474 0 1 + 28015 18676 18674 18681 27632 27632 -0.0109815511736997 LNYMRNFS 8 Unmodified _LNYMRNFS_ 0 0 0 REV__ENSG00000140548|ENST00000268154|ZNF710 REV__ENSG00000140548|ENST00000268154|ZNF710 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7006225585938 2 522.750201 1043.48585 0.72397 0.00037846 -0.054094 -2.8277E-05 0.66988 0.00035018 522.7508301650843 108.69 1.0095 104.5 103.9 104.91 -4.1826 58 28 3 0 0 0 0.70613 1 20851 20851 13.508 3.3245 1 4172100 + 28016 16587 18675 18682 27633 27633 -0.034153431227423425 LNYWSAKSL 9 Unmodified _LNYWSAKSL_ 0 0 0 ENST00000456101.6_1_6:109773431-109775944:-|nuORF;nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;MICAL1|p.T754Qfs*150|1|0.53|ENSG00000135596|chr6:109446741-109446741|C/-|frameshift_variant ENST00000456101.6_1_6:109773431-109775944:-|nuORF;MICAL1|p.T754Qfs*150|1|0.53|ENSG00000135596|chr6:109446741-109446741|C/-|frameshift_variant ENST00000456101.6_1_6:109773431-109775944:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.276123046875 2 541.287474 1080.5604 0.31711 0.00017165 -0.18392 -9.9556E-05 0.13318 7.2091E-05 541.2872657898442 136.84 0.97598 132 131.69 132.66 -4.84 60 27 3 0 0 0 0.48644 1 26438 26438 20.454 3.5113 1 5378200 28017 10024;12147 18676 18683 27634 27634 0.023337429602634074 LPAARTMR 8 Unmodified _LPAARTMR_ 0 0 0 nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.220458984375 2 458.263279 914.512005 0.5153 0.00023614 0.68079 0.00031198 1.1961 0.00054813 458.2634824762843 169.17 1.191 164.3 163.83 165.02 -4.873 84 34 3 0 0 0 0.84608 1 33523 33523 2.3027 0.24298 1 103800000 28018 12500 18677 18684 27635 27635 0.05132970839383688 LPAGGCCG 8 Unmodified _LPAGGCCG_ 0 0 0 PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.1422424316406 2 339.14091 676.267266 NaN NaN NaN NaN NaN NaN NaN 102.79 1 98.468 97.968 98.968 -4.3208 0 0 0 0.21486 1 19680 19680 0.79363 0 1 28019 12808 18678 18685 27636 27636 -0.08381650965907284 LPALSSRSHL 10 Unmodified _LPALSSRSHL_ 0 0 0 ENSG00000165084|ENST00000518698|C8orf34 ENSG00000165084|ENST00000518698|C8orf34 ENSG00000165084|ENST00000518698|C8orf34 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2745971679688 2 540.811648 1079.60874 0.46321 0.00025051 -1.1719 -0.0006338 -0.70873 -0.00038329 540.8109639093002 88.809 0.79091 84.813 84.429 85.22 -3.9953 40 22 3 0 0 0 0.89697 1 16921 16921 11.495 1.4208 1 4603800 28020 5593 18679 18686 27637 27637 0.07212236600184951 LPAPRPPPQP 10 Unmodified _LPAPRPPPQP_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant;TNXB|p.G2152Afs*46|1|0.18|ENSG00000168477|chr6:32067750-32067750|C/-|frameshift_variant;TNXB|p.E2633Sfs*2|1|0.06|ENSG00000168477|chr6:32056832-32056832|C/-|frameshift_variant;ENST00000486148.1_1_6:32065519-32065975:-|nuORF;TNXB|p.G314Afs*257|1|0.07|ENSG00000168477|chr6:32096912-32096912|C/-|frameshift_variant nc|ENSG00000168477|P22105-1|TNXB;TNXB|p.G314Afs*257|1|0.07|ENSG00000168477|chr6:32096912-32096912|C/-|frameshift_variant nc|ENSG00000168477|P22105-1|TNXB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 535.31005859375 2 535.311284 1068.60801 NaN NaN NaN NaN NaN NaN NaN 169.67 1 164.74 164.24 165.24 -4.9295 0 0 0 0.22588 1 33514 33514 6.2058 1.4498 1 28021 5911;25869 18680 18687 27638 27638 0.07645441951149223 LPAQYPYK 8 Unmodified _LPAQYPYK_ 0 0 0 REV__nc|ENSG00000163214|Q6P158-2|DHX57 REV__nc|ENSG00000163214|Q6P158-2|DHX57 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.264892578125 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 69.396 1 66.006 65.506 66.506 -3.3903 0 0 0 0.23025 1 13123 13123 0.62683 0.041507 1 + 28022 13678 18681 18688 27639 27639 0.027349729028514957 LPATGEGP 8 Unmodified _LPATGEGP_ 0 0 0 REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.377685546875 1 741.377746 740.370469 0.096352 7.1433E-05 -0.23495 -0.00017419 -0.1386 -0.00010275 741.3775396268634 79.633 0.38458 75.957 75.727 76.111 -3.676 17 10 2 0 0 0 0.088049 1 15161 15161 78.445 25.752 1 2014300 + 28023 13683 18682 18689 27640 27640 -0.010101239820869523 LPATGEGP 8 Unmodified _LPATGEGP_ 0 0 0 REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 741.377746 740.370469 0.68697 0.00050931 -0.38952 -0.00028878 0.29746 0.00022053 741.3773026489931 79.461 0.56652 75.951 75.692 76.259 -3.5102 -0.0031499 -6.7973E-05 NaN 78.445 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2533500 + 28024 13683 18682 18689 -0.010101239820869523 LPATGEGP 8 Unmodified _LPATGEGP_ 0 0 0 REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 741.377746 740.370469 0.096352 7.1433E-05 -0.23495 -0.00017419 -0.1386 -0.00010275 741.3775396268634 79.633 0.38458 75.957 75.727 76.111 -3.676 0.0031499 4.6619E-05 NaN 78.445 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2014300 + 28025 13683 18682 18689 -0.010101239820869523 LPATRIPDPP 10 Unmodified _LPATRIPDPP_ 0 0 0 ENSG00000149792|ENST00000279242|MRPL49 ENSG00000149792|ENST00000279242|MRPL49 ENSG00000149792|ENST00000279242|MRPL49 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 538.9977416992188 2 538.808574 1075.60259 NaN NaN NaN NaN NaN NaN NaN 174.02 1 174.02 173.52 174.52 0 0 0 0 0.22588 1 36014 36014 9.3831 0 1 28026 4811 18683 18690 27641 27641 0.06781718368642942 LPCQGLCPQK 10 Unmodified _LPCQGLCPQK_ 0 0 0 ENST00000261200.8_2_12:21960310-21960358:-|nuORF ENST00000261200.8_2_12:21960310-21960358:-|nuORF ENST00000261200.8_2_12:21960310-21960358:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7759399414062 2 543.775362 1085.53617 0.32572 0.00017712 1.042 0.00056661 1.3677 0.00074373 543.7761427732092 71.708 0.74193 68.08 67.847 68.589 -3.6275 49 20 3 0 0 0 0.42762 1 13544 13544 10.151 9.9786 1 3646900 28027 8292 18684 18691 27642 27642 -0.0031755678924128006 LPCRLWPSD 9 Unmodified _LPCRLWPSD_ 0 0 0 ENST00000482393.1_1_13:103309549-103320211:+|nuORF ENST00000482393.1_1_13:103309549-103320211:+|nuORF ENST00000482393.1_1_13:103309549-103320211:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7808837890625 2 543.773677 1085.5328 NaN NaN NaN NaN NaN NaN NaN 163.77 1 158.98 158.48 159.48 -4.7898 0 0 0 0.19512 1 32671 32671 12.241 4.0851 1 28028 10394 18685 18692 27643 27643 -0.006544835716113084 LPCWMNRHLWK 11 Unmodified _LPCWMNRHLWK_ 0 0 0 nc|ENSG00000269335|Q9Y6K9-2|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3773803710938 2 742.376109 1482.73766 NaN NaN NaN NaN NaN NaN NaN 5.44 1 5.44 4.94 5.94 0 0 0 0 0.23698 1 285 285 0.30703 0 1 28029 12638 18686 18693 27644 27644 0.015605519670998547 LPDDHLKDE 9 Unmodified _LPDDHLKDE_ 0 0 0 nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3 nc|ENSG00000133318|O95197-7|RTN3 nc|ENSG00000133318|O95197-7|RTN3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2608642578125 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 160.19 1 155.4 154.9 155.9 -4.7952 0 0 0 0.23508 1 31855 31855 6.7232 0.51738 1 28030 3797 18687 18694 27645 27645 -0.028280455243020697 LPDQTNDEY 9 Unmodified _LPDQTNDEY_ 0 0 0 REV__nc|ENSG00000168781|Q6PFW1-7|PPIP5K1 REV__nc|ENSG00000168781|Q6PFW1-7|PPIP5K1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7703857421875 2 547.735468 1093.45638 NaN NaN NaN NaN NaN NaN NaN 160.14 1 154.91 154.41 155.41 -5.2299 0 0 0 0.23508 1 31088 31088 10.074 4.3135 1 + 28031 18055 18688 18695 27646 27646 -0.08660628657889902 LPDSRFLL 8 Unmodified _LPDSRFLL_ 0 0 0 REV__ENST00000470863.1_1_1:246490478-246670519:-|nuORF REV__ENST00000470863.1_1_1:246490478-246670519:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2366027832031 2 480.779285 959.544017 0.056566 2.7196E-05 0.46122 0.00022175 0.51779 0.00024894 480.77941187932635 100.59 0.47942 96.429 96.22 96.699 -4.1594 18 13 2 0 0 0 0.86749 1 19751 19751 21.747 3.6117 1 995350 + 28032 18967 18689 18696 27647 27647 0.06262661794187352 LPDSSLATSA 10 Unmodified _LPDSSLATSA_ 0 0 0 nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;IRF2BP2|p.K554Nfs*26|1|0.21|ENSG00000168264|chr1:234607239-234607239|T/-|frameshift_variant;ENSG00000168264|ENST00000366609|IRF2BP2 nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2 nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2455749511719 2 481.245472 960.476391 0.29519 0.00014206 -0.40736 -0.00019604 -0.11217 -5.3981E-05 481.2452674009798 100.13 1.2189 95.834 95.417 96.636 -4.297 121 35 5 0 0 0 0.48672 1 19268 19268 25.399 0 1 194490000 28033 5891 18690 18697 27648 27648 -0.005428329272831434 LPDSWKTYA 9 Unmodified _LPDSWKTYA_ 0 0 0 ENSG00000156869|ENST00000646001|FRRS1;nc|ENSG00000156869|Q6ZNA5-2|FRRS1 ENSG00000156869|ENST00000646001|FRRS1 ENSG00000156869|ENST00000646001|FRRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2653198242188 2 540.771657 1079.52876 0.4448 0.00024053 0.39855 0.00021553 0.84335 0.00045606 541.2735108276055 151.17 0.67006 145.99 145.75 146.42 -5.1759 22 18 2 0 0 0 0.60805 1 29375 29375 12.532 0 1 3054600 28034 5106 18691 18698 27649 27649 -0.007822497936786021 LPDWNHFD 8 Unmodified _LPDWNHFD_ 0 0 0 ENSG00000204020|ENST00000404459|LIPN ENSG00000204020|ENST00000404459|LIPN ENSG00000204020|ENST00000404459|LIPN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2732543945312 2 522.232699 1042.45084 NaN NaN NaN NaN NaN NaN NaN 165.93 1 160.95 160.45 161.45 -4.9811 0 0 0 0.23366 1 32475 32475 0.30703 0 1 28035 7553 18692 18699 27650 27650 -0.06868262659031643 LPDWRQPVFYY 11 Unmodified _LPDWRQPVFYY_ 0 0 0 ENST00000376946.2_1_10:22209591-22217997:-|nuORF;DNAJC1|p.Q326Tfs*4|1|0.32|ENSG00000136770|chr10:21882284-21882285|-/T|frameshift_variant;DNAJC1|p.K325Nfs*14|1|0.38|ENSG00000136770|chr10:21882285-21882285|T/-|frameshift_variant;DNAJC1|p.V420Gfs*13|1|0.13|ENSG00000136770|chr10:21759507-21759508|-/C|frameshift_variant;ENSG00000136770|ENST00000376980|DNAJC1 ENST00000376946.2_1_10:22209591-22217997:-|nuORF ENST00000376946.2_1_10:22209591-22217997:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.372802734375 2 742.372069 1482.72959 NaN NaN NaN NaN NaN NaN NaN 160.13 1 154.88 154.38 155.38 -5.2526 0 0 0 0.23698 1 31077 31077 1.3295 0 1 28036 9257 18693 18700 27651 27651 0.007530195230174286 LPEAHGCCW 9 Unmodified _LPEAHGCCW_ 0 0 0 nc|ENSG00000175513|Q3SY00-2|TSGA10IP;ENSG00000175513|ENST00000532620|TSGA10IP nc|ENSG00000175513|Q3SY00-2|TSGA10IP nc|ENSG00000175513|Q3SY00-2|TSGA10IP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.12945556640625 3 339.142329 1014.40516 NaN NaN NaN NaN NaN NaN NaN 104.64 1 100.59 100.09 101.09 -4.0543 0 0 0 0.23508 1 20125 20125 1.1933 0.735 1 28037 6416 18694 18701 27652 27652 -0.10146947437294784 LPEGLLRQRY 10 Unmodified _LPEGLLRQRY_ 0 0 0 ENSG00000268350|ENST00000622447|FAM156A;ENSG00000179304|ENST00000416841|FAM156B ENSG00000268350|ENST00000622447|FAM156A ENSG00000268350|ENST00000622447|FAM156A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.763671875 2 622.859129 1243.70371 NaN NaN NaN NaN NaN NaN NaN 57.741 1 54.83 54.33 55.33 -2.9105 0 0 0 0.22588 1 11079 11079 6.7232 3.4419 1 28038 6624 18695 18702 27653 27653 0.09160170071390894 LPEIAIPEFI 10 Unmodified _LPEIAIPEFI_ 0 0 0 APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant;APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant;APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant;APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2209167480469 3 381.221631 1140.64306 NaN NaN NaN NaN NaN NaN NaN 37.625 1 37.625 37.125 38.125 0 0 0 0 0.22588 1 6959 6959 5.7834 0 1 28039 185;184 18696 18703 27654 27654 0.07836639968422787 LPEMAPLRRQ 10 Unmodified _LPEMAPLRRQ_ 0 0 0 REV__ENST00000527304.1_1_11:65380411-65381302:-|nuORF REV__ENST00000527304.1_1_11:65380411-65381302:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 605.8408813476562 2 605.839882 1209.66521 NaN NaN NaN NaN NaN NaN NaN 7.9904 1 6.9756 6.4756 7.4756 -1.0148 0 0 0 0.22588 1 711 711 0 0 1 + 28040 22677 18697 18704 27655 27655 0.06876541165206618 LPEPLTLPP 9 Unmodified _LPEPLTLPP_ 0 0 0 REV__ZNF646|p.K142Nfs*77|1|0.31|ENSG00000167395|chr16:31076747-31076747|A/-|frameshift_variant REV__ZNF646|p.K142Nfs*77|1|0.31|ENSG00000167395|chr16:31076747-31076747|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 326.1864013671875 3 326.195304 975.564084 NaN NaN NaN NaN NaN NaN NaN 85.542 1 85.542 85.042 86.042 0 0 0 0 0.23508 1 16695 16695 1.1933 0 1 + 28041 25589 18698 18705 27656 27656 0.075324127341446 LPEQQMGQL 9 Unmodified _LPEQQMGQL_ 0 0 0 ENSG00000163207|ENST00000368764|IVL ENSG00000163207|ENST00000368764|IVL ENSG00000163207|ENST00000368764|IVL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2635498046875 2 522.263142 1042.51173 NaN NaN NaN NaN NaN NaN NaN 120.4 1 115.87 115.37 116.37 -4.5221 0 0 0 0.19679 1 23740 23740 0.40827 0 1 28042 5409 18699 18706 27657 27657 -0.007824936711131159 LPFCCIKCFKL 11 Unmodified _LPFCCIKCFKL_ 0 0 0 ZNF462|p.R1847C|1|0.22|ENSG00000148143|chr9:106929451-106929451|C/T|missense_variant ZNF462|p.R1847C|1|0.22|ENSG00000148143|chr9:106929451-106929451|C/T|missense_variant ZNF462|p.R1847C|1|0.22|ENSG00000148143|chr9:106929451-106929451|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 438.89544677734375 3 438.897219 1313.66983 NaN NaN NaN NaN NaN NaN NaN 9.8165 1 8.7229 8.2229 9.2229 -1.0936 0 0 0 0.23698 1 1072 1072 0 0 1 28043 26622 18700 18707 27658 27658 0.02553965992092344 LPFCVPLVPP 10 Unmodified _LPFCVPLVPP_ 0 0 0 REV__ENST00000176763.9_1_5:171471274-171471448:-|nuORF REV__ENST00000176763.9_1_5:171471274-171471448:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2649536132812 2 541.309364 1080.60417 0.30514 0.00016517 0.052728 2.8542E-05 0.35787 0.00019372 541.8093753968614 126.4 0.25787 126.4 126.24 126.5 0 9 6 2 0 0 0 0.79408 1 24935 24935 24.674 6.5389 1 1597100 + 28044 19984 18701 18708 27659 27659 0.06709636133064123 LPFKRPDKMK 10 Unmodified _LPFKRPDKMK_ 0 0 0 REV__nc|ENSG00000123643|Q7Z2H8-3|SLC36A1 REV__nc|ENSG00000123643|Q7Z2H8-3|SLC36A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7785034179688 2 630.368275 1258.722 0.37411 0.00023582 -0.36685 -0.00023125 0.0072612 4.5772E-06 630.870438565154 75.38 0.3167 71.657 71.475 71.792 -3.7227 9 8 2 0 0 0 0.90091 1 14245 14245 3.2813 0.28607 1 1806500 + 28045 15740 18702 18709 27660 27660 0.1029858872168461 LPFLPTPM 8 Unmodified _LPFLPTPM_ 0 0 0 ENST00000383779.8_1_3:15614715-15637929:-|nuORF;nc|ENSG00000131373|Q9UJ83-3|HACL1;nc|ENSG00000131373|Q9UJ83-4|HACL1;nc|ENSG00000131373|Q9UJ83-2|HACL1;ENSG00000131373|ENST00000321169|HACL1 ENST00000383779.8_1_3:15614715-15637929:-|nuORF ENST00000383779.8_1_3:15614715-15637929:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386169433594 2 458.254057 914.493561 NaN NaN NaN NaN NaN NaN NaN 106.76 1 106.76 106.26 107.26 0 0 0 0 0.2074 1 20988 20988 19.439 5.9311 1 28046 3669 18703 18710 27661 27661 0.032894161448325576 LPFPGRSASY 10 Unmodified _LPFPGRSASY_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7762451171875 2 547.785099 1093.55564 0.20718 0.00011349 -2.2363 -0.001225 -2.0291 -0.0011115 547.7844037617747 159.87 0.18056 154.64 154.59 154.77 -5.2299 5 4 2 0 0 0 0.8888 1 31056 31056 7.2892 2.0586 1 509070 28047 2454 18704 18711 27662 27662 0.012608588175226032 LPFVSSFWY 9 Unmodified _LPFVSSFWY_ 0 0 0 ENST00000602285.1_1_5:176562104-176563088:+|nuORF ENST00000602285.1_1_5:176562104-176563088:+|nuORF ENST00000602285.1_1_5:176562104-176563088:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 573.290283203125 2 573.286943 1144.55933 NaN NaN NaN NaN NaN NaN NaN 135.69 1 131.06 130.56 131.56 -4.6399 0 0 0 0.23508 1 26767 26767 8.5933 0.98433 1 28048 11713 18705 18712 27663 27663 -0.007164714086229651 LPFVYFWWRLG 11 Unmodified _LPFVYFWWRLG_ 0 0 0 ENST00000398238.8_1_17:44834336-44834585:+|nuORF ENST00000398238.8_1_17:44834336-44834585:+|nuORF ENST00000398238.8_1_17:44834336-44834585:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3978271484375 2 742.39789 1482.78123 NaN NaN NaN NaN NaN NaN NaN 96.902 1 92.804 92.304 93.304 -4.0978 0 0 0 0.23698 1 19007 19007 1.4819 0 1 28049 9481 18706 18713 27664 27664 0.05914808007537431 LPGALAAH 8 Unmodified _LPGALAAH_ 0 0 0 REV__ENSG00000269113|ENST00000606738|TRABD2B REV__ENSG00000269113|ENST00000606738|TRABD2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2184143066406 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 60.554 1 57.33 56.83 57.83 -3.2237 0 0 0 0.23711 1 11327 11327 0.063987 0 1 + 28050 19911 18707 18714 27665 27665 0.038898788713822796 LPGGHREVTV 10 Unmodified _LPGGHREVTV_ 0 0 0 REV__nc|ENSG00000131471|Q16853-2|AOC3 REV__nc|ENSG00000131471|Q16853-2|AOC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.287109375 2 532.795998 1063.57744 -0.055772 -2.9715E-05 -0.30388 -0.0001619 -0.35965 -0.00019162 532.7957045154384 49.967 0.52441 47.085 46.729 47.253 -2.8811 29 14 3 0 0 0 0.80147 1 9476 9476 15.248 5.1746 1 1671600 + 28051 13070 18708 18715 27666 27666 0.048196635660815446 LPGGHREVTV 10 Unmodified _LPGGHREVTV_ 0 0 0 REV__nc|ENSG00000131471|Q16853-2|AOC3 REV__nc|ENSG00000131471|Q16853-2|AOC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2872924804688 2 532.795998 1063.57744 0.42875 0.00022844 -0.60964 -0.00032481 -0.18088 -9.6375E-05 532.7954706265903 50.111 0.47028 47.112 46.833 47.303 -2.999 24 13 2 0 0 0 0.5575 2 9142 9124;9142 21.537 1.0834 1 1428900 + 28052 13070 18708 18715 27667;27668 27668 0.048196635660815446 LPGGSQGR 8 Unmodified _LPGGSQGR_ 0 0 0 ENST00000513929.5_1_19:54024361-54024520:+|nuORF ENST00000513929.5_1_19:54024361-54024520:+|nuORF ENST00000513929.5_1_19:54024361-54024520:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 386.21014404296875 2 386.209027 770.403501 NaN NaN NaN NaN NaN NaN NaN 54.646 1 51.763 51.263 52.263 -2.8837 0 0 0 0.21486 1 10436 10436 10.183 0 1 28053 10768 18709 18716 27669 27669 0.009115028606288433 LPGGSQGR 8 Unmodified _LPGGSQGR_ 0 0 0 ENST00000513929.5_1_19:54024361-54024520:+|nuORF ENST00000513929.5_1_19:54024361-54024520:+|nuORF ENST00000513929.5_1_19:54024361-54024520:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 386.2099609375 2 386.209027 770.403501 NaN NaN NaN NaN NaN NaN NaN 54.523 1 51.388 50.888 51.888 -3.1352 0 0 0 0.21486 1 10061 10061 10.183 0 1 28054 10768 18709 18716 27670 27670 0.009115028606288433 LPGGSQGR 8 Unmodified _LPGGSQGR_ 0 0 0 ENST00000513929.5_1_19:54024361-54024520:+|nuORF ENST00000513929.5_1_19:54024361-54024520:+|nuORF ENST00000513929.5_1_19:54024361-54024520:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 386.2100830078125 2 386.209027 770.403501 NaN NaN NaN NaN NaN NaN NaN 55.521 1 52.383 51.883 52.883 -3.1377 0 0 0 0.21486 1 10309 10309 10.183 0 1 28055 10768 18709 18716 27671 27671 0.009115028606288433 LPGRLQALAL 10 Unmodified _LPGRLQALAL_ 0 0 0 REV__ENSG00000174576|ENST00000311034|NPAS4 REV__ENSG00000174576|ENST00000311034|NPAS4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 526.3511962890625 2 526.334759 1050.65496 NaN NaN NaN NaN NaN NaN NaN 164.73 1 159.66 159.16 160.16 -5.0648 0 0 0 2.8426 1 32144 32144 3.5927 1.6652 1 + 28056 18422 18710 18717 27672 27672 0.13166301502246824 LPGSNEVWYD 10 Unmodified _LPGSNEVWYD_ 0 0 0 ENSG00000214013|ENST00000318010|GANC ENSG00000214013|ENST00000318010|GANC ENSG00000214013|ENST00000318010|GANC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2721557617188 2 590.269478 1178.5244 NaN NaN NaN NaN NaN NaN NaN 168.68 1 168.68 168.18 169.18 0 0 0 0 0.22588 1 34568 34568 10.074 0 1 28057 7716 18711 18718 27673 27673 -0.05771759007234323 LPHIISLY 8 Unmodified _LPHIISLY_ 0 0 0 REV__GPR101|p.S141Vfs*36|1|0.29|ENSG00000165370|chrX:137031255-137031256|-/G|frameshift_variant REV__GPR101|p.S141Vfs*36|1|0.29|ENSG00000165370|chrX:137031255-137031256|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7275390625 2 478.284203 954.553853 NaN NaN NaN NaN NaN NaN NaN 120.11 1 115.65 115.15 116.15 -4.467 0 0 0 0.21486 1 23124 23124 10.183 0 1 + 28058 23586 18712 18719 27674 27674 0.07475849799573098 LPHLEVEM 8 Unmodified _LPHLEVEM_ 0 0 0 REV__ENST00000370287.7_1_X:151903256-151903741:+|nuORF REV__ENST00000370287.7_1_X:151903256-151903741:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 484.2597961425781 2 484.249503 966.484453 0.10422 5.0468E-05 0.38706 0.00018743 0.49128 0.0002379 484.2495470634635 101.13 0.76992 96.973 96.666 97.436 -4.1594 36 21 2 0 0 0 0.8748 1 19948 19948 17.049 13.462 1 992640 + 28059 20978 18713 18720 27675 27675 -0.00012977211497400276 LPHLEVEM 8 Unmodified _LPHLEVEM_ 0 0 0 REV__ENST00000370287.7_1_X:151903256-151903741:+|nuORF REV__ENST00000370287.7_1_X:151903256-151903741:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 484.249503 966.484453 0.40225 0.00019479 -0.30594 -0.00014815 0.096314 4.664E-05 484.2493108042679 101.43 0.89541 97.107 96.645 97.54 -4.3208 0.084475 -0.00041063 NaN 17.049 40 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1376400 + 28060 20978 18713 18720 -0.00012977211497400276 LPHLEVEM 8 Unmodified _LPHLEVEM_ 0 0 0 REV__ENST00000370287.7_1_X:151903256-151903741:+|nuORF REV__ENST00000370287.7_1_X:151903256-151903741:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 484.249503 966.484453 0.22919 0.00011098 0.22885 0.00011082 0.45804 0.0002218 484.24968913313523 100.98 1.1789 96.988 96.653 97.832 -3.9895 -0.035054 0.00010731 NaN 17.049 71 33 3 NaN NaN NaN NaN 0 NaN NaN 0 1690400 + 28061 20978 18713 18720 -0.00012977211497400276 LPHLLHHL 8 Unmodified _LPHLLHHL_ 0 0 0 REV__ENST00000577198.5_1_17:26603697-26633156:-|nuORF REV__ENST00000577198.5_1_17:26603697-26633156:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2598571777344 2 490.295436 978.57632 0.13838 6.7848E-05 -0.04323 -2.1195E-05 0.095153 4.6653E-05 490.29534443992975 129.31 1.0086 124.68 124.12 125.12 -4.6292 52 28 3 0 0 0 0.56774 1 25448 25448 24.21 0 1 2672700 + 28062 23213 18714 18721 27676 27676 0.08617493987844682 LPHLLHHL 8 Unmodified _LPHLLHHL_ 0 0 0 REV__ENST00000577198.5_1_17:26603697-26633156:-|nuORF REV__ENST00000577198.5_1_17:26603697-26633156:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.295436 978.57632 0.17183 8.4248E-05 0.14351 7.0364E-05 0.31534 0.00015461 490.29544287507514 129.34 1.0083 124.52 124.06 125.06 -4.817 -0.19778 3.6909E-05 NaN 24.21 48 28 2 NaN NaN NaN NaN 0 NaN NaN 0 2766300 + 28063 23213 18714 18721 0.08617493987844682 LPHLLHHL 8 Unmodified _LPHLLHHL_ 0 0 0 REV__ENST00000577198.5_1_17:26603697-26633156:-|nuORF REV__ENST00000577198.5_1_17:26603697-26633156:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 490.295436 978.57632 -0.075272 -3.6906E-05 0.38515 0.00018884 0.30988 0.00015193 490.29551567822926 129.38 0.91946 124.64 124.22 125.14 -4.7408 -0.081147 0.00027386 NaN 24.21 41 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1844600 + 28064 23213 18714 18721 0.08617493987844682 LPHVRLRI 8 Unmodified _LPHVRLRI_ 0 0 0 REV__nc|ENSG00000158296|Q8WWT9-3|SLC13A3 REV__nc|ENSG00000158296|Q8WWT9-3|SLC13A3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 335.54620361328125 3 335.222299 1002.64507 NaN NaN NaN NaN NaN NaN NaN 13.48 1 12.307 11.807 12.807 -1.173 0 0 0 0.2396 1 1752 1752 0.12286 0 1 + 28065 17331 18715 18722 27677 27677 0.14385158287552713 LPIIKKKVR 9 Unmodified _LPIIKKKVR_ 0 0 0 nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9 nc|ENSG00000117859|Q96SU4-5|OSBPL9 nc|ENSG00000117859|Q96SU4-5|OSBPL9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.8932495117188 2 547.892244 1093.76993 NaN NaN NaN NaN NaN NaN NaN 178.94 1 178.94 178.44 179.44 0 0 0 0 0.19626 1 37066 37066 0.073264 0.073264 1 28066 3005 18716 18723 27678 27678 0.2268003070407758 LPILKKKLA 9 Unmodified _LPILKKKLA_ 0 0 0 ENST00000486468.1_1_2:180027226-180056568:-|nuORF;SESTD1|p.G438Vfs*20|2|0.26|ENSG00000187231|chr2:179121901-179121901|T/-|frameshift_variant;ENSG00000187231|ENST00000428443|SESTD1 ENST00000486468.1_1_2:180027226-180056568:-|nuORF ENST00000486468.1_1_2:180027226-180056568:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.3670043945312 2 512.36807 1022.72159 NaN NaN NaN NaN NaN NaN NaN 169.96 1 169.96 169.46 170.46 0 0 0 0 0.23508 1 34916 34916 0.6015 0 1 28067 7103 18717 18724 27679 27679 0.2111353706417276 LPIPRIKRPN 10 Unmodified _LPIPRIKRPN_ 0 0 0 ENSG00000184210|ENST00000333026|DGAT2L6 ENSG00000184210|ENST00000333026|DGAT2L6 ENSG00000184210|ENST00000333026|DGAT2L6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2883911132812 2 602.387857 1202.76116 NaN NaN NaN NaN NaN NaN NaN 171.76 1 166.89 166.39 167.39 -4.873 0 0 0 0.22588 1 34055 34055 2.9952 0.26005 1 28068 6895 18718 18725 27680 27680 0.16789057067603608 LPITVLPNRE 10 Unmodified _LPITVLPNRE_ 0 0 0 nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3245849609375 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 154.46 1 149.68 149.18 150.18 -4.7768 0 0 0 0.22588 1 30699 30699 5.2969 1.7004 1 28069 2586 18719 18726 27681 27681 0.10169962948521061 LPKAKPILV 9 Unmodified _LPKAKPILV_ 0 0 0 REV__nc|ENSG00000145284|Q86SK9-2|SCD5 REV__nc|ENSG00000145284|Q86SK9-2|SCD5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2712707519531 2 489.839146 977.663738 NaN NaN NaN NaN NaN NaN NaN 146.81 1 146.81 146.31 147.31 0 0 0 0 0.19631 1 29364 29364 0.20686 0 1 + 28070 16833 18720 18727 27682 27682 0.17401275138763594 LPKFFLALVV 10 Unmodified _LPKFFLALVV_ 0 0 0 ENST00000486860.5_1_7:87838471-87849341:-|nuORF ENST00000486860.5_1_7:87838471-87849341:-|nuORF ENST00000486860.5_1_7:87838471-87849341:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 573.8677978515625 2 573.867903 1145.72125 NaN NaN NaN NaN NaN NaN NaN 11.253 1 10.16 9.6595 10.66 -1.0936 0 0 0 0.22588 1 1326 1326 0 0 1 28071 10461 18721 18728 27683 27683 0.15422117344269282 LPKFIFPT 8 Unmodified _LPKFIFPT_ 0 0 0 tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1 tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1 tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78692626953125 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 122.01 1 117.48 116.98 117.98 -4.5305 0 0 0 0.19492 1 23489 23489 26.341 4.5946 1 28072 26029 18722 18729 27684 27684 0.08137037804954161 LPKGRLRRK 9 Unmodified _LPKGRLRRK_ 0 0 0 REV__ENST00000379987.6_1_4:106891525-106891783:+|nuORF REV__ENST00000379987.6_1_4:106891525-106891783:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 562.3440551757812 2 562.380366 1122.74618 NaN NaN NaN NaN NaN NaN NaN 170.19 1 170.19 169.69 170.69 0 0 0 0 0.23508 1 34982 34982 4.756 0.42677 1 + 28073 21148 18723 18730 27685 27685 0.18971609990239813 LPKIRFYRVYE 11 Unmodified _LPKIRFYRVYE_ 0 0 0 REV__ENSG00000175283|ENST00000372586|DOLK REV__ENSG00000175283|ENST00000372586|DOLK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.4042358398438 2 742.424636 1482.83472 NaN NaN NaN NaN NaN NaN NaN 144.79 1 140.12 139.62 140.62 -4.6694 0 0 0 0.23698 1 28682 28682 1.1933 0 1 + 28074 18468 18724 18731 27686 27686 0.11261560719390218 LPKIVVRRVLR 11 Unmodified _LPKIVVRRVLR_ 0 0 0 ENST00000567100.5_2_16:68057196-68071937:+|nuORF ENST00000567100.5_2_16:68057196-68071937:+|nuORF ENST00000567100.5_2_16:68057196-68071937:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 675.0208740234375 2 674.966806 1347.91906 NaN NaN NaN NaN NaN NaN NaN 169.43 1 164.64 164.14 165.14 -4.7898 0 0 0 0.23698 1 34320 34320 1.1933 0.84271 1 28075 11375 18725 18732 27687 27687 0.25901556326834907 LPKKIIVYG 9 Unmodified _LPKKIIVYG_ 0 0 0 REV__CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant REV__CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.4927673339844 3 344.226827 1029.65865 NaN NaN NaN NaN NaN NaN NaN 50.923 1 48.041 47.541 48.541 -2.8824 0 0 0 0.19624 1 9668 9668 0.40827 0.28045 1 + 28076 13344 18726 18733 27688 27688 0.14500971276129349 LPKKKKPKKL 10 Unmodified _LPKKKKPKKL_ 0 0 0 CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;CHD5|p.C358Afs*108|1|0.07|ENSG00000116254|chr1:6149336-6149336|C/-|frameshift_variant CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 604.3277587890625 2 604.434276 1206.854 NaN NaN NaN NaN NaN NaN NaN 165.16 1 165.16 164.66 165.66 0 0 0 0 2.8426 1 33488 33488 1.9064 1.2087 1 28077 515 18727 18734 27689 27689 0.25884561800967276 LPKLSGAQE 9 Unmodified _LPKLSGAQE_ 0 0 0 REV__nc|ENSG00000154240|Q8N8E3-2|CEP112 REV__nc|ENSG00000154240|Q8N8E3-2|CEP112 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.82611083984375 3 314.846675 941.518196 0.29393 9.2544E-05 -0.41536 -0.00013078 -0.12143 -3.8232E-05 314.84654953418857 31.452 1.2277 29.425 28.989 30.216 -2.0264 88 34 4 0 0 0 0.5428 1 5581 5581 4.897 1.6157 1 35107000 + 28078 24105 18728 18735 27690 27690 0.04509767551905952 LPKPFDAAA 9 Unmodified _LPKPFDAAA_ 0 0 0 REV__ENSG00000135625|ENST00000436467|EGR4 REV__ENSG00000135625|ENST00000436467|EGR4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2579040527344 2 465.258185 928.501818 0.29632 0.00013787 -0.45923 -0.00021366 -0.16291 -7.5794E-05 465.25799465895733 50.647 0.6143 50.647 50.3 50.914 0 31 17 3 0 0 0 0.38188 1 9623 9623 26.884 3.7352 1 2510800 + 28079 16281 18729 18736 27691 27691 0.03470686385787758 LPKPFDAAA 9 Unmodified _LPKPFDAAA_ 0 0 0 REV__ENSG00000135625|ENST00000436467|EGR4 REV__ENSG00000135625|ENST00000436467|EGR4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 465.258185 928.501818 -0.044582 -2.0742E-05 0.10502 4.8863E-05 0.060443 2.8121E-05 465.25825872414526 53.367 0.60969 50.272 49.934 50.544 -3.0954 -0.11921 0.00016486 NaN 26.884 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2401000 + 28080 16281 18729 18736 0.03470686385787758 LPKPLALPG 9 Unmodified _LPKPLALPG_ 0 0 0 ENST00000494550.5_1_6:33263795-33265760:-|nuORF;RGL2|p.E372Kfs*34|1|0.48|ENSG00000237441|chr6:33295329-33295329|C/-|frameshift_variant;nc|ENSG00000237441|O15211-2|RGL2;ENST00000483151.5_1_6:33261379-33266279:-|nuORF;ENSG00000237441|ENST00000497454|RGL2 ENST00000494550.5_1_6:33263795-33265760:-|nuORF ENST00000494550.5_1_6:33263795-33265760:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7655944824219 2 453.294571 904.574589 NaN NaN NaN NaN NaN NaN NaN 144.18 1 139.23 138.73 139.73 -4.9445 0 0 0 0.10107 1 27841 27841 38.151 6.0342 1 28081 7829 18730 18737 27692 27692 0.11848440179232966 LPKRRVIHLL 10 Unmodified _LPKRRVIHLL_ 0 0 0 nc|ENSG00000151718|Q6AWC2-5|WWC2;nc|ENSG00000151718|Q6AWC2-3|WWC2;nc|ENSG00000151718|Q6AWC2-2|WWC2;nc|ENSG00000151718|Q6AWC2-4|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-6|WWC2 nc|ENSG00000151718|Q6AWC2-5|WWC2 nc|ENSG00000151718|Q6AWC2-5|WWC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7564086914062 2 622.919324 1243.8241 0.33752 0.00021025 -2.7157 -0.0016917 -2.3782 -0.0014814 622.916930820724 144.39 0.10413 139.32 139.25 139.35 -5.0671 4 2 2 0 0 0 0.91149 1 27852 27852 0.45834 0.057624 1 3069900 28082 4885 18731 18738 27693 27693 0.21193622855662397 LPKSKAIY 8 Unmodified _LPKSKAIY_ 0 0 0 nc|ENSG00000163995|Q6H8Q1-4|ABLIM2;ABLIM2|p.S399Afs*29|1|0.08|ENSG00000163995|chr4:8020278-8020278|G/-|frameshift_variant;nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;ABLIM2|p.D469Mfs*94|1|0.32|ENSG00000163995|chr4:8008170-8008170|C/-|frameshift_variant;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2 nc|ENSG00000163995|Q6H8Q1-4|ABLIM2 nc|ENSG00000163995|Q6H8Q1-4|ABLIM2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.226318359375 2 460.284203 918.553853 NaN NaN NaN NaN NaN NaN NaN 103.86 1 99.802 99.302 100.3 -4.0543 0 0 0 0.21486 1 19969 19969 6.3541 0 1 28083 25 18732 18739 27694 27694 0.09131849799541669 LPKVEDKV 8 Unmodified _LPKVEDKV_ 0 0 0 ENST00000468790.1_1_10:115479033-115479252:+|nuORF ENST00000468790.1_1_10:115479033-115479252:+|nuORF ENST00000468790.1_1_10:115479033-115479252:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 464.1402893066406 2 464.279118 926.543683 0.23709 0.00011007 -0.18787 -8.7222E-05 0.049221 2.2853E-05 464.2789414434221 84.432 0.7037 84.432 84.029 84.733 0 36 19 3 0 0 0 0.98792 1 16519 16519 2.3027 0 1 6963100 28084 10173 18733 18740 27695 27695 0.07747242074322003 LPLCATTT 8 Unmodified _LPLCATTT_ 0 0 0 REV__ENST00000278671.9_1_11:71809441-71810244:-|nuORF REV__ENST00000278671.9_1_11:71809441-71810244:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.1141662597656 2 410.217672 818.42079 NaN NaN NaN NaN NaN NaN NaN 120.24 1 115.72 115.22 116.22 -4.5221 0 0 0 0.21486 1 23708 23708 2.8892 0 1 + 28085 20297 18734 18741 27696 27696 0.004316623513773266 LPLCVVPL 8 Unmodified _LPLCVVPL_ 0 0 0 REV__ENST00000496920.1_1_8:27238201-27253644:+|nuORF REV__ENST00000496920.1_1_8:27238201-27253644:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.1407165527344 2 427.264425 852.514297 NaN NaN NaN NaN NaN NaN NaN 24.824 1 23.176 22.676 23.676 -1.6482 0 0 0 0.21486 1 4337 4337 0.79363 0 1 + 28086 22394 18735 18742 27697 27697 0.08214006524474371 LPLDSAKNW 9 Unmodified _LPLDSAKNW_ 0 0 0 REV__PRDM7|p.E263K|1|0.2|ENSG00000126856|chr16:90062016-90062016|C/T|missense_variant REV__PRDM7|p.E263K|1|0.2|ENSG00000126856|chr16:90062016-90062016|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2823486328125 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 144.25 1 139.18 138.68 139.68 -5.0671 0 0 0 0.23508 1 27820 27820 10.074 2.7847 1 + 28087 24505 18736 18743 27698 27698 0.025174564432290936 LPLEPEPAI 9 Unmodified _LPLEPEPAI_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2650146484375 2 489.778951 977.543348 0.17547 8.5939E-05 0.23889 0.000117 0.41435 0.00020294 489.77901820129455 114.39 1.0202 114.39 113.8 114.82 0 54 28 2 0 0 0 0.25702 1 22387 22387 34.102 10.954 1 25414000 28088 7479 18737 18744 27699 27699 0.05367822354457985 LPLEPEPAI 9 Unmodified _LPLEPEPAI_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27667236328125 2 489.778951 977.543348 0.35741 0.00017505 -0.022219 -1.0882E-05 0.33519 0.00016417 489.7789265940839 118.43 1.217 113.93 113.32 114.53 -4.502 74 34 3 0 0 0 0.35443 1 23258 23258 28.487 5.3384 1 33323000 28089 7479 18737 18744 27700 27700 0.05367822354457985 LPLEPEPAI 9 Unmodified _LPLEPEPAI_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2673645019531 2 489.778951 977.543348 0.18096 8.8629E-05 0.15794 7.7354E-05 0.33889 0.00016598 489.77898901378313 118.39 1.1656 113.98 113.39 114.56 -4.4088 67 32 3 0 0 0 0.38188 1 22685 22685 26.884 3.7352 1 27140000 28090 7479 18737 18744 27701 27701 0.05367822354457985 LPLFLKLP 8 Unmodified _LPLFLKLP_ 0 0 0 REV__ENST00000547216.1_1_12:57871100-57871594:-|nuORF REV__ENST00000547216.1_1_12:57871100-57871594:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 470.33184814453125 2 470.815139 939.615725 NaN NaN NaN NaN NaN NaN NaN 8.4253 1 7.7462 7.2462 8.2462 -0.67913 0 0 0 0.2396 1 873 873 0.12286 0 1 + 28091 22905 18738 18745 27702 27702 0.14350201218690017 LPLHSHRSF 9 Unmodified _LPLHSHRSF_ 0 0 0 REV__nc|ENSG00000172728|Q6P4F1-3|FUT10 REV__nc|ENSG00000172728|Q6P4F1-3|FUT10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7764282226562 2 547.298707 1092.58286 0.42229 0.00023112 2.4323 0.0013312 2.8546 0.0015623 547.3009521066413 149.35 0.13962 144.23 144.18 144.32 -5.1204 5 3 2 0 0 0 0.79204 1 28951 28951 11.64 0.81637 1 1828300 + 28092 18303 18739 18746 27703 27703 0.04027387148562411 LPLILLKKK 9 Unmodified _LPLILLKKK_ 0 0 0 REV__tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1 REV__tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2799682617188 2 533.391545 1064.76854 0.10635 5.6726E-05 -1.7676 -0.00094281 -1.6612 -0.00088608 533.3920330429908 140.58 0.20673 140.58 140.51 140.72 0 8 5 2 0 0 0 0.65565 1 28008 28008 0 0 1 2496600 + 28093 25211 18740 18747 27704 27704 0.23874396615292426 LPLILLKKK 9 Unmodified _LPLILLKKK_ 0 0 0 REV__tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1 REV__tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2718505859375 2 533.391545 1064.76854 NaN NaN NaN NaN NaN NaN NaN 158.19 1 153.39 152.89 153.89 -4.7952 0 0 0 0.19635 1 31455 31455 0 0 1 + 28094 25211 18740 18747 27705 27705 0.23874396615292426 LPLKILPLIAI 11 Unmodified _LPLKILPLIAI_ 0 0 0 nc|ENSG00000113448|Q08499-11|PDE4D;ENST00000514231.1_1_5:59092909-59284421:-|nuORF;ENST00000512069.6_1_5:58854610-59284490:-|nuORF;ENST00000509355.5_1_5:59284313-59481425:-|nuORF;ENST00000509368.6_1_5:59284313-59481385:-|nuORF nc|ENSG00000113448|Q08499-11|PDE4D nc|ENSG00000113448|Q08499-11|PDE4D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3001708984375 2 602.425585 1202.83662 NaN NaN NaN NaN NaN NaN NaN 76.774 1 76.774 76.274 77.274 0 0 0 0 0.23698 1 14919 14919 0 0 1 28095 12289 18741 18748 27706 27706 0.2433122147533595 LPLKILPLIAI 11 Unmodified _LPLKILPLIAI_ 0 0 0 nc|ENSG00000113448|Q08499-11|PDE4D;ENST00000514231.1_1_5:59092909-59284421:-|nuORF;ENST00000512069.6_1_5:58854610-59284490:-|nuORF;ENST00000509355.5_1_5:59284313-59481425:-|nuORF;ENST00000509368.6_1_5:59284313-59481385:-|nuORF nc|ENSG00000113448|Q08499-11|PDE4D nc|ENSG00000113448|Q08499-11|PDE4D MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2823486328125 2 602.425585 1202.83662 NaN NaN NaN NaN NaN NaN NaN 82.39 1 78.517 78.017 79.017 -3.8736 0 0 0 0.22632 1 15656 15656 0 0 1 28096 12289 18741 18748 27707 27707 0.2433122147533595 LPLKILPLIAI 11 Unmodified _LPLKILPLIAI_ 0 0 0 nc|ENSG00000113448|Q08499-11|PDE4D;ENST00000514231.1_1_5:59092909-59284421:-|nuORF;ENST00000512069.6_1_5:58854610-59284490:-|nuORF;ENST00000509355.5_1_5:59284313-59481425:-|nuORF;ENST00000509368.6_1_5:59284313-59481385:-|nuORF nc|ENSG00000113448|Q08499-11|PDE4D nc|ENSG00000113448|Q08499-11|PDE4D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2825927734375 2 602.425585 1202.83662 NaN NaN NaN NaN NaN NaN NaN 121.09 1 116.56 116.06 117.06 -4.5305 0 0 0 0.22632 1 23317 23317 0 0 1 28097 12289 18741 18748 27708 27708 0.2433122147533595 LPLKKCPP 8 Unmodified _LPLKKCPP_ 0 0 0 ENST00000324787.9_2_7:140710339-140714730:-|nuORF;ENST00000393008.7_1_7:140710339-140714460:-|nuORF ENST00000324787.9_2_7:140710339-140714730:-|nuORF ENST00000324787.9_2_7:140710339-140714730:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 448.52423095703125 2 448.275324 894.536095 NaN NaN NaN NaN NaN NaN NaN 54.961 1 52.077 51.577 52.577 -2.8837 0 0 0 0.21486 1 10503 10503 0.79363 0 1 28098 8731 18742 18749 27709 27709 0.08460811273050695 LPLLERRK 8 Unmodified _LPLLERRK_ 0 0 0 REV__nc|ENSG00000070814|Q13428-2|TCOF1 REV__nc|ENSG00000070814|Q13428-2|TCOF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.01800537109375 3 342.225709 1023.6553 NaN NaN NaN NaN NaN NaN NaN 38.507 1 36.102 35.602 36.602 -2.4049 0 0 0 0.21486 1 6854 6854 3.9444 0 1 + 28099 14268 18743 18750 27710 27710 0.14441721222124215 LPLLGNVLSYR 11 Unmodified _LPLLGNVLSYR_ 0 0 0 ENSG00000106258|ENST00000222982|CYP3A5;nc|ENSG00000106258|P20815-2|CYP3A5 ENSG00000106258|ENST00000222982|CYP3A5 ENSG00000106258|ENST00000222982|CYP3A5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7723388671875 2 622.871705 1243.72886 NaN NaN NaN NaN NaN NaN NaN 136.9 1 132.25 131.75 132.75 -4.6413 0 0 0 0.22632 1 27012 27012 3.0723 2.4869 1 28100 2368 18744 18751 27711 27711 0.11674224873945604 LPLLIRWLQ 9 Unmodified _LPLLIRWLQ_ 0 0 0 REV__AICDA|p.R177W|1|0.04|ENSG00000111732|chr12:8604821-8604821|G/A|missense_variant REV__AICDA|p.R177W|1|0.04|ENSG00000111732|chr12:8604821-8604821|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.311767578125 2 576.368601 1150.72265 0.29912 0.0001724 0.2104 0.00012127 0.50952 0.00029367 576.8713963519386 145.9 0.14038 145.9 145.8 145.94 0 5 3 2 0 0 0 0.74257 1 29167 29167 4.3292 0.73274 1 2301700 + 28101 12990 18745 18752 27712 27712 0.15331751433086538 LPLLIRWLQ 9 Unmodified _LPLLIRWLQ_ 0 0 0 REV__AICDA|p.R177W|1|0.04|ENSG00000111732|chr12:8604821-8604821|G/A|missense_variant REV__AICDA|p.R177W|1|0.04|ENSG00000111732|chr12:8604821-8604821|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.368601 1150.72265 0.29912 0.0001724 0.2104 0.00012127 0.50952 0.00029367 576.8713963519386 145.9 0.14038 145.9 145.8 145.94 0 0 0 NaN 4.3292 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2301700 + 28102 12990 18745 18752 0.15331751433086538 LPLLKPKPKRR 11 Unmodified _LPLLKPKPKRR_ 0 0 0 ENST00000399247.6_1_6:29694759-29696203:-|nuORF ENST00000399247.6_1_6:29694759-29696203:-|nuORF ENST00000399247.6_1_6:29694759-29696203:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.5281677246094 4 337.234316 1344.90816 -0.34729 -0.00011712 -1.7657 -0.00059545 -2.113 -0.00071257 337.4842218600588 24.917 1.0197 24.917 24.371 25.391 0 50 29 2 0 0 0 0.663 1 4396 4396 0.026206 0 1 895900 28103 9495 18746 18753 27713 27713 0.2495015395252267 LPLLLKVLAKH 11 Unmodified _LPLLLKVLAKH_ 0 0 0 REV__ENSG00000121892|ENST00000303538|PDS5A REV__ENSG00000121892|ENST00000303538|PDS5A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7654418945312 2 622.926283 1243.83801 NaN NaN NaN NaN NaN NaN NaN 113.9 1 109.45 108.95 109.95 -4.4539 0 0 0 0.22632 1 22442 22442 0.094841 0 1 + 28104 15668 18747 18754 27714 27714 0.2258485556405958 LPLLLLLLLRL 11 Unmodified _LPLLLLLLLRL_ 0 0 0 REV__nc|ENSG00000165731|P07949-2|RET REV__nc|ENSG00000165731|P07949-2|RET MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 645.5687255859375 2 645.467784 1288.92102 NaN NaN NaN NaN NaN NaN NaN 37.864 1 37.864 37.364 38.364 0 0 0 0 0.23698 1 7009 7009 0 0 1 + 28105 17798 18748 18755 27715 27715 0.288111722920803 LPLLLTLAAY 10 Unmodified _LPLLLTLAAY_ 0 0 0 ENSG00000244165|ENST00000321826|P2RY11 ENSG00000244165|ENST00000321826|P2RY11 ENSG00000244165|ENST00000321826|P2RY11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7965087890625 2 544.341718 1086.66888 0.12878 7.0103E-05 4.4865 0.0024422 4.6153 0.0025123 544.3444932512879 145.93 0.2066 140.82 140.69 140.89 -5.1108 8 5 3 0 0 0 0.88157 1 28195 28195 7.9102 6.0659 1 2251500 28106 7878 18749 18756 27716 27716 0.12901534210709542 LPLLPELQPQP 11 Unmodified _LPLLPELQPQP_ 0 0 0 ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;PANK1|p.P401Afs*5|1|0.23|ENSG00000152782|chr10:89599362-89599363|-/T|frameshift_variant;PANK1|p.K400Sfs*23|1|0.36|ENSG00000152782|chr10:89599363-89599363|T/-|frameshift_variant ENSG00000152782|ENST00000307534|PANK1 ENSG00000152782|ENST00000307534|PANK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7667236328125 2 622.866089 1243.71762 NaN NaN NaN NaN NaN NaN NaN 167.11 1 162.22 161.72 162.72 -4.8916 0 0 0 0.224 1 32818 32818 13.042 0.80181 1 28107 4941 18750 18757 27717 27717 0.10551402779788077 LPLLVMGM 8 Unmodified _LPLLVMGM_ 0 0 0 REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1 REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2164001464844 2 437.25046 872.486367 NaN NaN NaN NaN NaN NaN NaN 177.01 1 172.11 171.61 172.61 -4.9008 0 0 0 0.21486 1 35299 35299 0.79363 0 1 + 28108 16221 18751 18758 27718 27718 0.045023602727496836 LPLMTELGP 9 Unmodified _LPLMTELGP_ 0 0 0 REV__ENSG00000084774|ENST00000264705|CAD REV__ENSG00000084774|ENST00000264705|CAD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1872253417969 3 324.180778 969.520504 NaN NaN NaN NaN NaN NaN NaN 72.562 1 69.023 68.523 69.523 -3.5385 0 0 0 0.23508 1 13758 13758 1.1933 0 1 + 28109 14470 18752 18759 27719 27719 0.034524799653581795 LPLPLPCEPS 10 Unmodified _LPLPLPCEPS_ 0 0 0 REV__ENST00000359297.6_1_1:36806079-36806220:-|nuORF REV__ENST00000359297.6_1_1:36806079-36806220:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.287109375 2 533.286085 1064.55762 0.10618 5.6627E-05 0.69526 0.00037077 0.80145 0.0004274 533.2861197793412 131.93 0.79729 131.93 131.5 132.3 0 45 22 3 0 0 0 0.43454 1 26061 26061 28.487 11.545 1 5199100 + 28110 20850 18753 18760 27720 27720 0.02792151511107477 LPLPLPCEPS 10 Unmodified _LPLPLPCEPS_ 0 0 0 REV__ENST00000359297.6_1_1:36806079-36806220:-|nuORF REV__ENST00000359297.6_1_1:36806079-36806220:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.286376953125 2 533.286085 1064.55762 0.43402 0.00023146 0.62426 0.00033291 1.0583 0.00056437 533.7877490390232 137.81 1.0559 132.88 132.33 133.39 -4.9216 61 29 3 0 0 0 0.351 1 26513 26513 34.102 13.649 1 2457700 + 28111 20850 18753 18760 27721 27721 0.02792151511107477 LPLSARAKLL 10 Unmodified _LPLSARAKLL_ 0 0 0 REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|154|3|sense REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|154|3|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2716674804688 2 541.358234 1080.70191 0.30537 0.00016531 0.42267 0.00022881 0.72804 0.00039413 541.3583137904486 127.7 0.13812 127.7 127.61 127.75 0 5 3 2 0 0 0 0.91149 1 25213 25213 6.7232 1.4925 1 1343700 + 28112 23612 18754 18761 27722 27722 0.16479161053416647 LPLSPHSHPP 10 Unmodified _LPLSPHSHPP_ 0 0 0 REV__ENST00000558018.5_1_15:89442371-89442626:-|nuORF REV__ENST00000558018.5_1_15:89442371-89442626:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2805786132812 2 541.293091 1080.57163 0.17555 9.5025E-05 0.082585 4.4703E-05 0.25814 0.00013973 541.2931917791324 59.634 1.573 56.701 55.871 57.444 -2.9333 100 44 3 0 0 0 0.48672 1 11464 11464 25.399 0 1 2144000 + 28113 23019 18755 18762 27723 27723 0.03456565054420935 LPLSPHSHPP 10 Unmodified _LPLSPHSHPP_ 0 0 0 REV__ENST00000558018.5_1_15:89442371-89442626:-|nuORF REV__ENST00000558018.5_1_15:89442371-89442626:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.281982421875 2 541.293091 1080.57163 0.14516 7.8574E-05 0.20434 0.00011061 0.3495 0.00018918 541.2931157486837 59.842 1.714 56.528 55.854 57.568 -3.3139 95 48 3 0 0 0 0.57735 2 11175 11175;11256 20.454 0 1 1761600 + 28114 23019 18755 18762 27724;27725 27724 0.03456565054420935 LPLSPHSHPP 10 Unmodified _LPLSPHSHPP_ 0 0 0 REV__ENST00000558018.5_1_15:89442371-89442626:-|nuORF REV__ENST00000558018.5_1_15:89442371-89442626:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2815551757812 2 541.293091 1080.57163 0.21788 0.00011794 0.11097 6.0068E-05 0.32885 0.00017801 541.2931322709069 59.792 1.5778 56.568 55.878 57.456 -3.2237 101 44 3 0 0 0 0.57735 1 11220 11220 20.454 0 1 2074600 + 28115 23019 18755 18762 27726 27726 0.03456565054420935 LPLSPHSHPP 10 Unmodified _LPLSPHSHPP_ 0 0 0 REV__ENST00000558018.5_1_15:89442371-89442626:-|nuORF REV__ENST00000558018.5_1_15:89442371-89442626:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.293091 1080.57163 0.17555 9.5025E-05 0.082585 4.4703E-05 0.25814 0.00013973 541.2931917791324 59.634 1.573 56.701 55.871 57.444 -2.9333 0.058364 -2.5649E-05 NaN 25.399 100 44 3 NaN NaN NaN NaN 0 NaN NaN 0 2144000 + 28116 23019 18755 18762 0.03456565054420935 LPLVLLVAEQ 10 Unmodified _LPLVLLVAEQ_ 0 0 0 REV__TMC6|p.Y488Tfs*67|1|0.39|ENSG00000141524|chr17:78121087-78121087|G/-|frameshift_variant REV__TMC6|p.Y488Tfs*67|1|0.39|ENSG00000141524|chr17:78121087-78121087|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.8426513671875 2 547.844625 1093.6747 NaN NaN NaN NaN NaN NaN NaN 8.028 1 7.0131 6.5131 7.5131 -1.0148 0 0 0 2.8426 1 718 718 0.13989 0 1 + 28117 16636 18756 18763 27727 27727 0.13160632722360788 LPLVLPVP 8 Unmodified _LPLVLPVP_ 0 0 0 ENST00000305366.7_1_3:149095461-149095638:-|nuORF ENST00000305366.7_1_3:149095461-149095638:-|nuORF ENST00000305366.7_1_3:149095461-149095638:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25189208984375 2 424.286214 846.557876 -0.35372 -0.00015008 0.17699 7.5094E-05 -0.17673 -7.4983E-05 424.28654125357514 55.177 0.75656 52.294 51.94 52.696 -2.8837 46 21 3 0 0 0 0.83271 1 10639 10639 2.8892 2.0956 1 6769700 28118 8601 18757 18764 27728 27728 0.12845939293265474 LPMEEPDCL 9 Unmodified _LPMEEPDCL_ 0 0 0 REV__THSD7A|p.C1369Lfs*5|1|0.13|ENSG00000005108|chr7:11406431-11406432|-/A|frameshift_variant REV__THSD7A|p.C1369Lfs*5|1|0.13|ENSG00000005108|chr7:11406431-11406432|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.68408203125 2 523.730286 1045.44602 -0.47071 -0.00024652 2.0113 0.0010534 1.5406 0.00080687 523.7317272900041 142.94 0.13951 137.91 137.82 137.96 -5.0261 5 3 2 0 0 0 0.55732 1 27541 27541 0.029283 0 1 2587300 + 28119 13853 18758 18765 27729 27729 -0.07488650908339878 LPMKNAAKDH 10 Unmodified _LPMKNAAKDH_ 0 0 0 REV__ENSG00000109265|ENST00000682029|CRACD REV__ENSG00000109265|ENST00000682029|CRACD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.854736328125 3 375.534214 1123.58081 0.19214 7.2156E-05 0.55656 0.00020901 0.74871 0.00028117 375.53430271171476 27.071 0.73706 25.437 25.178 25.915 -1.6347 80 20 5 0 0 0 1.1138 1 4570 4570 10.151 0 1 11638000 + 28120 15158 18759 18766 27730 27730 0.02396590348416794 LPMKPPLTK 9 Unmodified _LPMKPPLTK_ 0 0 0 REV__nc|ENSG00000079841|Q86UR5-4|RIMS1 REV__nc|ENSG00000079841|Q86UR5-4|RIMS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.2126770019531 3 342.212301 1023.61507 NaN NaN NaN NaN NaN NaN NaN 60.796 1 57.863 57.363 58.363 -2.9333 0 0 0 0.23508 1 11706 11706 2.9952 0.26005 1 + 28121 14403 18760 18767 27731 27731 0.10421038507331559 LPMKPPLTK 9 Unmodified _LPMKPPLTK_ 0 0 0 REV__nc|ENSG00000079841|Q86UR5-4|RIMS1 REV__nc|ENSG00000079841|Q86UR5-4|RIMS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.21282958984375 3 342.212301 1023.61507 NaN NaN NaN NaN NaN NaN NaN 62.111 1 58.742 58.242 59.242 -3.3694 0 0 0 0.23508 1 11588 11588 2.9952 0.26005 1 + 28122 14403 18760 18767 27732 27732 0.10421038507331559 LPMKRQPAV 9 Unmodified _LPMKRQPAV_ 0 0 0 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 520.2731323242188 2 520.307687 1038.60082 -0.1384 -7.201E-05 1.5289 0.00079551 1.3905 0.0007235 520.8094431291045 146.85 0.16849 142.16 142.09 142.26 -4.6868 5 4 2 0 0 0 0.51974 1 29123 29123 1.2148 0 1 1729600 + 28123 18081 18761 18768 27733 27733 0.0830638607903893 LPMYLEDE 8 Unmodified _LPMYLEDE_ 0 0 0 REV__ENST00000606388.5_1_6:146204418-146204589:+|nuORF REV__ENST00000606388.5_1_6:146204418-146204589:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 505.29693603515625 2 505.230976 1008.4474 NaN NaN NaN NaN NaN NaN NaN 149.81 1 149.81 149.31 150.31 0 0 0 0 0.21486 1 29990 29990 10.183 0 1 + 28124 23459 18762 18769 27734 27734 -0.056486935479370004 LPNAGHEVLE 10 Unmodified _LPNAGHEVLE_ 0 0 0 REV__nc|ENSG00000134461|Q6P6B7-2|ANKRD16 REV__nc|ENSG00000134461|Q6P6B7-2|ANKRD16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21185302734375 3 360.189101 1077.54547 -0.29944 -0.00010785 1.1478 0.00041343 0.84838 0.00030558 360.1894359230221 44.54 0.45967 41.75 41.459 41.919 -2.79 15 12 2 0 0 0 0.91149 1 8318 8318 6.6304 1.3335 1 724520 + 28125 16213 18763 18770 27735 27735 0.009802510922781948 LPNEPNRL 8 Unmodified _LPNEPNRL_ 0 0 0 nc|ENSG00000142002|Q86TI2-4|DPP9;DPP9|p.F814Sfs*10|1|0.34|ENSG00000142002|chr19:4679893-4679893|A/-|frameshift_variant;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9 nc|ENSG00000142002|Q86TI2-4|DPP9 nc|ENSG00000142002|Q86TI2-4|DPP9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0478515625 3 318.178536 951.513779 NaN NaN NaN NaN NaN NaN NaN 40.836 1 40.836 40.336 41.336 0 0 0 0 0.21486 1 7604 7604 1.6526 0 1 28126 885 18764 18771 27736 27736 0.036083031289877 LPNFETACWY 10 Unmodified _LPNFETACWY_ 0 0 0 PHF2|p.F363L|1|0.12|ENSG00000197724|chr9:93656535-93656535|T/C|missense_variant PHF2|p.F363L|1|0.12|ENSG00000197724|chr9:93656535-93656535|T/C|missense_variant PHF2|p.F363L|1|0.12|ENSG00000197724|chr9:93656535-93656535|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7767944335938 2 622.276249 1242.53795 0.3411 0.00021226 -0.41379 -0.00025749 -0.072684 -4.5229E-05 622.2758059990675 18.106 0.38985 18.106 17.84 18.23 0 13 10 2 0 0 0 0.84281 1 2920 2920 19.257 0 1 658670 28127 12782 18765 18772 27737 27737 -0.07362224499638614 LPNHPLGLSP 10 Unmodified _LPNHPLGLSP_ 0 0 0 REV__ENST00000431485.2_3_7:99214596-99216149:+|nuORF REV__ENST00000431485.2_3_7:99214596-99216149:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.69775390625 2 522.795466 1043.57638 -0.012154 -6.3539E-06 0.19465 0.00010176 0.18249 9.5406E-05 522.7955410769506 120.78 0.73618 116.14 115.69 116.43 -4.645 51 20 3 0 0 0 0.71097 1 23177 23177 10.074 0.72649 1 5173000 + 28128 21619 18766 18773 27738 27738 0.056334491971938405 LPNKLEEL 8 Unmodified _LPNKLEEL_ 0 0 0 ENSG00000188958|ENST00000340524|UTS2B ENSG00000188958|ENST00000340524|UTS2B ENSG00000188958|ENST00000340524|UTS2B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72711181640625 2 478.276575 954.538597 NaN NaN NaN NaN NaN NaN NaN 138.69 1 134.05 133.55 134.55 -4.6439 0 0 0 0.22692 1 27386 27386 1.4551 0 1 28129 7208 18767 18774 27739 27739 0.0595093821170849 LPNRQHVV 8 Unmodified _LPNRQHVV_ 0 0 0 ENST00000470432.5_1_1:150483317-150483689:+|nuORF;nc|ENSG00000143369|Q16610-3|ECM1;nc|ENSG00000143369|Q16610-2|ECM1;ENSG00000143369|ENST00000369047|ECM1;nc|ENSG00000143369|Q16610-4|ECM1 ENST00000470432.5_1_1:150483317-150483689:+|nuORF ENST00000470432.5_1_1:150483317-150483689:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78143310546875 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 163.11 1 163.11 162.61 163.61 0 0 0 0 0.21323 1 32850 32850 14.582 2.0501 1 28130 4478 18768 18775 27740 27740 0.06343715602804423 LPNRQHVV 8 Unmodified _LPNRQHVV_ 0 0 0 ENST00000470432.5_1_1:150483317-150483689:+|nuORF;nc|ENSG00000143369|Q16610-3|ECM1;nc|ENSG00000143369|Q16610-2|ECM1;ENSG00000143369|ENST00000369047|ECM1;nc|ENSG00000143369|Q16610-4|ECM1 ENST00000470432.5_1_1:150483317-150483689:+|nuORF ENST00000470432.5_1_1:150483317-150483689:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7824401855469 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 129.84 1 125.06 124.56 125.56 -4.7725 0 0 0 0.2343 1 24980 24980 0.25148 0 1 28131 4478 18768 18775 27741 27741 0.06343715602804423 LPNSPNLSH 9 Unmodified _LPNSPNLSH_ 0 0 0 ENST00000467719.5_1_11:2937762-2940985:+|nuORF ENST00000467719.5_1_11:2937762-2940985:+|nuORF ENST00000467719.5_1_11:2937762-2940985:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2529602050781 2 489.753798 977.493044 0.10706 5.2434E-05 0.20133 9.8602E-05 0.30839 0.00015104 489.7538707350691 45.625 0.69796 42.784 42.439 43.137 -2.8409 42 19 3 0 0 0 0.36931 1 8546 8546 27.629 2.2295 1 4599500 28132 10156 18769 18776 27742 27742 0.0033971274932582674 LPNSPNLSH 9 Unmodified _LPNSPNLSH_ 0 0 0 ENST00000467719.5_1_11:2937762-2940985:+|nuORF ENST00000467719.5_1_11:2937762-2940985:+|nuORF ENST00000467719.5_1_11:2937762-2940985:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2667541503906 2 489.753798 977.493044 -0.34997 -0.0001714 0.84001 0.0004114 0.49004 0.00024 489.7541787115941 45.622 0.70071 42.755 42.397 43.097 -2.8666 47 19 3 0 0 0 0.15214 2 8214 8214;8233 43.858 15.371 1 4314200 28133 10156 18769 18776 27743;27744 27743 0.0033971274932582674 LPNWRKWLLWW 11 Unmodified _LPNWRKWLLWW_ 0 0 0 REV__ENST00000492278.5_1_9:140356998-140357325:-|nuORF REV__ENST00000492278.5_1_9:140356998-140357325:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2694702148438 3 533.297868 1596.87177 0.099735 5.3189E-05 1.6149 0.00086123 1.7146 0.00091442 533.6318869456586 123.47 0.17465 123.47 123.35 123.52 0 6 4 2 0 0 0 0.96216 1 24312 24312 1.3296 1.2463 1 1496700 + 28134 16023 18770 18777 27745 27745 0.09721277055837163 LPPAFDLF 8 Unmodified _LPPAFDLF_ 0 0 0 ENST00000462422.5_1_1:246216281-246670414:-|nuORF;ENST00000470863.1_1_1:246490478-246670519:-|nuORF;SMYD3|p.I293Nfs*2|1|0.25|ENSG00000185420|chr1:245863822-245863823|-/T|frameshift_variant;nc|ENSG00000185420|Q9H7B4-3|SMYD3;ENSG00000185420|ENST00000490107|SMYD3 ENST00000462422.5_1_1:246216281-246670414:-|nuORF ENST00000462422.5_1_1:246216281-246670414:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2491760253906 2 460.249829 918.485105 NaN NaN NaN NaN NaN NaN NaN 124.98 1 124.98 124.48 125.48 0 0 0 0 0.21486 1 24648 24648 10.183 0 1 28135 6988 18771 18778 27746 27746 0.022601854998470117 LPPASPGPPP 10 Unmodified _LPPASPGPPP_ 0 0 0 nc|ENSG00000090097|P57723-2|PCBP4;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000492809.5_1_3:51992079-51994784:-|nuORF nc|ENSG00000090097|P57723-2|PCBP4 nc|ENSG00000090097|P57723-2|PCBP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2581787109375 2 465.258185 928.501818 -0.274 -0.00012748 0.19656 9.145E-05 -0.07744 -3.603E-05 465.25820782124237 53.196 0.63279 50.312 49.999 50.632 -2.8837 33 17 3 0 0 0 0.65405 1 10108 10108 15.847 0 1 2781000 28136 1778 18772 18779 27747 27747 0.03470686385810495 LPPASPGPPP 10 Unmodified _LPPASPGPPP_ 0 0 0 nc|ENSG00000090097|P57723-2|PCBP4;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000492809.5_1_3:51992079-51994784:-|nuORF nc|ENSG00000090097|P57723-2|PCBP4 nc|ENSG00000090097|P57723-2|PCBP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.257568359375 2 465.258185 928.501818 -0.044582 -2.0742E-05 0.10502 4.8863E-05 0.060443 2.8121E-05 465.25825872414526 53.367 0.60969 50.272 49.934 50.544 -3.0954 35 17 3 0 0 0 0.65405 1 9841 9841 15.847 0 1 2401000 28137 1778 18772 18779 27748 27748 0.03470686385810495 LPPFYIVL 8 Unmodified _LPPFYIVL_ 0 0 0 REV__nc|ENSG00000017260|P98194-2|ATP2C1 REV__nc|ENSG00000017260|P98194-2|ATP2C1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7872009277344 2 481.291497 960.568441 0.51466 0.0002477 -0.47232 -0.00022732 0.042341 2.0378E-05 481.2911255280473 122.98 0.42616 118.25 117.94 118.37 -4.731 13 11 2 0 0 0 0.68738 1 23576 23576 24.21 0 1 695420 + 28138 13966 18773 18780 27749 27749 0.08657921947690284 LPPGLDYGP 9 Unmodified _LPPGLDYGP_ 0 0 0 ENST00000382580.6_1_22:29126449-29130456:-|nuORF ENST00000382580.6_1_22:29126449-29130456:-|nuORF ENST00000382580.6_1_22:29126449-29130456:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16448974609375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 72.588 1 68.96 68.46 69.46 -3.6275 0 0 0 0.23508 1 13708 13708 2.9952 0.49676 1 28139 9344 18774 18781 27750 27750 0.00354693631857117 LPPLLLCGTR 10 Unmodified _LPPLLLCGTR_ 0 0 0 ENST00000425217.5_2_12:118105298-118293285:-|nuORF ENST00000425217.5_2_12:118105298-118293285:-|nuORF ENST00000425217.5_2_12:118105298-118293285:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27392578125 2 541.823169 1081.63179 0.36922 0.00020005 -4.1015 -0.0022223 -3.7323 -0.0020222 542.3213886737947 156.14 0.17273 151.36 151.26 151.43 -4.7791 6 4 2 0 0 0 0.87565 1 31052 31052 10.8 5.0677 1 1062100 28140 9712 18775 18782 27751 27751 0.09423539393287683 LPPLLLHA 8 Unmodified _LPPLLLHA_ 0 0 0 ENSG00000187135|ENST00000335523|VSTM2B ENSG00000187135|ENST00000335523|VSTM2B ENSG00000187135|ENST00000335523|VSTM2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2294616699219 2 437.281463 872.548374 NaN NaN NaN NaN NaN NaN NaN 147.15 1 142.15 141.65 142.65 -5 0 0 0 0.23312 1 28481 28481 6.2058 0 1 28141 7098 18776 18783 27752 27752 0.10700171007749759 LPPLPAGV 8 Unmodified _LPPLPAGV_ 0 0 0 ENST00000205061.9_2_16:74484931-74485462:-|nuORF ENST00000205061.9_2_16:74484931-74485462:-|nuORF ENST00000205061.9_2_16:74484931-74485462:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 382.2229309082031 2 382.239264 762.463976 0.045556 1.7413E-05 -1.3832 -0.0005287 -1.3376 -0.00051129 382.2384731691862 40.734 0.17332 40.734 40.64 40.813 0 6 4 2 0 0 0 8448 1 7578 7578 1.3295 0 1 799880 28142 8091 18777 18784 27753 27753 0.07324220190992037 LPPLPLPRRDS 11 Unmodified _LPPLPLPRRDS_ 0 0 0 ENST00000532676.1_1_11:6702431-6703624:-|nuORF;ENST00000529958.1_1_11:6703351-6704139:-|nuORF;ENSG00000158042|ENST00000288937|MRPL17 ENST00000532676.1_1_11:6702431-6703624:-|nuORF ENST00000532676.1_1_11:6702431-6703624:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.764404296875 2 630.874779 1259.73501 NaN NaN NaN NaN NaN NaN NaN 133.19 1 133.19 132.69 133.69 0 0 0 0 0.22632 1 26347 26347 0.026206 0 1 28143 5148 18778 18785 27754 27754 0.11552743105471563 LPPPPPPPP 9 Unmodified _LPPPPPPPP_ 0 0 0 ZNF318|p.I1440M|1|0.43|ENSG00000171467|chr6:43339678-43339678|T/C|missense_variant;ENSG00000156232|ENST00000286760|WHAMM;ENSG00000188070|ENST00000433688|ZFTA;nc|ENSG00000168066|Q15637-5|SF1;ENSG00000077420|ENST00000376236|APBB1IP;ENSG00000139800|ENST00000267294|ZIC5;nc|ENSG00000160685|O15156-2|ZBTB7B;ENSG00000160685|ENST00000535420|ZBTB7B;ENSG00000145414|ENST00000274054|NAF1;SHROOM3|p.T1603Nfs*9|1|0.64|ENSG00000138771|chr4:76756543-76756544|-/A|frameshift_variant;ENSG00000248905|ENST00000616417|FMN1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7|TRERF1;nc|ENSG00000184922|O95466-3|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;ENSG00000184922|ENST00000331495|FMNL1;TRERF1|p.F853Rfs*6|2|0.34|ENSG00000124496|chr6:42256748-42256751|CAAA/-|frameshift_variant;ENSG00000176165|ENST00000313071|FOXG1;ENSG00000204334|ENST00000697325|ERICH2;ENSG00000126460|ENST00000246794|PRRG2;FBLIM1|p.P142Rfs*59|1|0.38|ENSG00000162458|chr1:15767546-15767546|C/-|frameshift_variant;ENST00000597121.5_1_19:50086773-50093643:+|nuORF;ENST00000584214.1_1_17:16253243-16256750:-|nuORF;ENSG00000175785|ENST00000393140|PRIMA1;FASLG|p.K141Rfs*3|2|0.35|ENSG00000117560|chr1:172664355-172664355|A/-|frameshift_variant;nc|ENSG00000117560|P48023-2|FASLG;nc|ENSG00000175785|Q86XR5-2|PRIMA1;ENST00000361272.8_2_8:17102747-17104366:-|nuORF;ENST00000596700.5_1_19:50084718-50093643:+|nuORF;ENST00000370452.7_1_6:71377516-71377693:+|nuORF;ENST00000247087.9_1_1:27875205-27875379:-|nuORF;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;ENST00000508096.1_1_10:126605730-126631034:+|nuORF;LMOD2|p.P448dup|2|0.32|ENSG00000170807|chr7:123662921-123662922|-/CCT|inframe_insertion;NAF1|p.Y466C|1|0.24|ENSG00000145414|chr4:163128985-163128985|T/C|missense_variant;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44;ENST00000560349.1_1_14:24532322-24538610:+|nuORF;nc|ENSG00000186648|Q8ND23-2|CARMIL3;OLFML2A|p.R326Pfs*80|1|0.24|ENSG00000185585|chr9:124804147-124804150|GGCA/-|frameshift_variant;ENSG00000176182|ENST00000322217|MYPOP;ENSG00000204335|ENST00000375281|SP5;ENST00000559694.5_1_14:24530705-24534560:+|nuORF;SP5|p.L264Pfs*118|1|0.23|ENSG00000204335|chr2:170716991-170716992|-/C|frameshift_variant;nc|ENSG00000162458|Q8WUP2-2|FBLIM1;ENSG00000162458|ENST00000375766|FBLIM1;ENSG00000143006|ENST00000371445|DMRTB1;FBLIM1|p.N331Kfs*6|1|0.42|ENSG00000162458|chr1:15777267-15777268|-/A|frameshift_variant;ZBTB7B|p.G247Afs*68|1|0.33|ENSG00000160685|chr1:155015396-155015396|G/-|frameshift_variant;ENSG00000183153|ENST00000578689|GJD3;ENST00000403681.6_2_12:66218024-66218900:+|nuORF;ENSG00000117560|ENST00000367721|FASLG;nc|ENSG00000166582|Q7Z7K6|CENPV;ENSG00000166582|ENST00000299736|CENPV;ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000141431|ENST00000269197|ASXL3;ENSG00000100312|ENST00000216139|ACR;nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B;SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant;SETD1B|p.L1532Ffs*35|1|0.12|ENSG00000139718|chr12:121823172-121823173|-/T|frameshift_variant;SETD1B|p.Q1589Sfs*11|3|0.38|ENSG00000139718|chr12:121823338-121823338|C/-|frameshift_variant;GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion;nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK;ENSG00000112290|ENST00000392589|WASF1;ENST00000379565.7_1_X:20227482-20284914:-|nuORF;ENSG00000168505|ENST00000306318|GBX2;ENSG00000170807|ENST00000458573|LMOD2;ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant;ENSG00000171467|ENST00000361428|ZNF318;RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;ENSG00000173166|ENST00000319170|RAPH1;AHDC1|p.K985Sfs*157|1|0.06|ENSG00000126705|chr1:27549162-27549162|T/-|frameshift_variant;AHDC1|p.F1046Sfs*96|1|0.2|ENSG00000126705|chr1:27548981-27548981|G/-|frameshift_variant;nc|ENSG00000139218|Q99590-2|SCAF11;ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000170004|Q12873-3|CHD3;ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B;KDM6B|p.P544Sfs*11|1|0.14|ENSG00000132510|chr17:7847912-7847913|-/C|frameshift_variant;KDM6B|p.R513Afs*69|1|0.84|ENSG00000132510|chr17:7847819-7847819|C/-|frameshift_variant;KDM6B|p.T676Hfs*8|1|0.18|ENSG00000132510|chr17:7848307-7848308|-/C|frameshift_variant;KDM6B|p.T743Pfs*39|1|0.55|ENSG00000132510|chr17:7848510-7848510|C/-|frameshift_variant;KDM6B|p.P842Hfs*52|1|0.38|ENSG00000132510|chr17:7848808-7848808|C/-|frameshift_variant;KDM6B|p.K1101Rfs*3|1|0.23|ENSG00000132510|chr17:7849583-7849583|C/-|frameshift_variant;ENSG00000187017|ENST00000645284|ESPN;nc|ENSG00000187017|B1AK53-2|ESPN;ENSG00000101901|ENST00000394780|ALG13;nc|ENSG00000101901|Q9NP73-3|ALG13;MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;ENSG00000186648|ENST00000342740|CARMIL3;ENST00000573523.5_1_17:4574736-4578861:-|nuORF;ENSG00000141456|ENST00000572293|PELP1;nc|ENSG00000248905|Q68DA7-5|FMN1 REV__ENSG00000215474|ENST00000425639|SKOR2;ENSG00000141431|ENST00000269197|ASXL3;REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant;REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;REV__nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000139718|Q9UPS6-2|SETD1B;REV__ENSG00000248905|ENST00000616417|FMN1;REV__ENSG00000176624|ENST00000406189|MEX3C;REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion;nc|ENSG00000168297|Q7Z7A4-3|PXK;ENSG00000112290|ENST00000392589|WASF1;REV__nc|ENSG00000154380|Q8N8S7-3|ENAH;REV__ENSG00000112290|ENST00000392589|WASF1;REV__ENSG00000182601|ENST00000331351|HS3ST4;REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant;REV__ENSG00000077420|ENST00000376236|APBB1IP;ENST00000379565.7_1_X:20227482-20284914:-|nuORF;REV__nc|ENSG00000119596|P49750-3|YLPM1;REV__ENSG00000205922|ENST00000382349|ONECUT3;REV__ENSG00000141431|ENST00000269197|ASXL3;ENSG00000168505|ENST00000306318|GBX2;REV__ENSG00000152409|ENST00000396137|JMY;REV__DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant;ENSG00000170807|ENST00000458573|LMOD2;REV__RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;REV__ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant;ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;REV__FBXO11|p.D318Kfs*3|1|0.37|ENSG00000138081|chr2:47833050-47833053|TGTC/-|frameshift_variant;AHDC1|p.K985Sfs*157|1|0.06|ENSG00000126705|chr1:27549162-27549162|T/-|frameshift_variant;nc|ENSG00000139218|Q99590-2|SCAF11;nc|ENSG00000170004|Q12873-3|CHD3;ENSG00000132510|ENST00000448097|KDM6B;ENSG00000187017|ENST00000645284|ESPN;ENSG00000101901|ENST00000394780|ALG13;MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant;REV__nc|ENSG00000157827|Q96PY5|FMNL2;nc|ENSG00000130396|P55196-2|AFDN;ENSG00000186648|ENST00000342740|CARMIL3;ENST00000573523.5_1_17:4574736-4578861:-|nuORF;nc|ENSG00000248905|Q68DA7-5|FMN1;REV__KDM6B|p.K1101Rfs*3|1|0.23|ENSG00000132510|chr17:7849583-7849583|C/-|frameshift_variant;REV__ENSG00000170807|ENST00000458573|LMOD2;REV__ENSG00000187017|ENST00000645284|ESPN;REV__INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant;REV__ENSG00000274209|ENST00000620264|ANTXRL;REV__ENST00000494373.1_1_2:54014190-54014463:+|nuORF;REV__FASLG|p.K141Rfs*3|2|0.35|ENSG00000117560|chr1:172664355-172664355|A/-|frameshift_variant;REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L;REV__TSPYL2|p.I84Sfs*63|2|0.12|ENSG00000184205|chrX:53082741-53082741|G/-|frameshift_variant REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 454.7583312988281 2 454.765646 907.516739 -0.10042 -4.5668E-05 0.20613 9.374E-05 0.10571 4.8072E-05 454.7656458828747 77.996 7.4475 74.533 72.459 79.906 -3.4633 341 211 3 0 0 0 0.069982 1 15048 15048 6.4869 0 1 3089800 28144 19033;15888;12455;25559;16390;24159;19818;14365;15291;13679;11436;19606;7089;18790;25562;4231;3736;18515;6145;17179;15584;4261;4362;6097;18332;3607;7073;19493;16120;18180;19071;19925;22364;23523;12622;17310;19691;2095;102;16436;6271;23986;17109;5916;13137;9298;2681;5894;11841;12154;25493 18779 18786 27755 27755 0.05928178253805072 LPPPPPPPP 9 Unmodified _LPPPPPPPP_ 0 0 0 ZNF318|p.I1440M|1|0.43|ENSG00000171467|chr6:43339678-43339678|T/C|missense_variant;ENSG00000156232|ENST00000286760|WHAMM;ENSG00000188070|ENST00000433688|ZFTA;nc|ENSG00000168066|Q15637-5|SF1;ENSG00000077420|ENST00000376236|APBB1IP;ENSG00000139800|ENST00000267294|ZIC5;nc|ENSG00000160685|O15156-2|ZBTB7B;ENSG00000160685|ENST00000535420|ZBTB7B;ENSG00000145414|ENST00000274054|NAF1;SHROOM3|p.T1603Nfs*9|1|0.64|ENSG00000138771|chr4:76756543-76756544|-/A|frameshift_variant;ENSG00000248905|ENST00000616417|FMN1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7|TRERF1;nc|ENSG00000184922|O95466-3|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;ENSG00000184922|ENST00000331495|FMNL1;TRERF1|p.F853Rfs*6|2|0.34|ENSG00000124496|chr6:42256748-42256751|CAAA/-|frameshift_variant;ENSG00000176165|ENST00000313071|FOXG1;ENSG00000204334|ENST00000697325|ERICH2;ENSG00000126460|ENST00000246794|PRRG2;FBLIM1|p.P142Rfs*59|1|0.38|ENSG00000162458|chr1:15767546-15767546|C/-|frameshift_variant;ENST00000597121.5_1_19:50086773-50093643:+|nuORF;ENST00000584214.1_1_17:16253243-16256750:-|nuORF;ENSG00000175785|ENST00000393140|PRIMA1;FASLG|p.K141Rfs*3|2|0.35|ENSG00000117560|chr1:172664355-172664355|A/-|frameshift_variant;nc|ENSG00000117560|P48023-2|FASLG;nc|ENSG00000175785|Q86XR5-2|PRIMA1;ENST00000361272.8_2_8:17102747-17104366:-|nuORF;ENST00000596700.5_1_19:50084718-50093643:+|nuORF;ENST00000370452.7_1_6:71377516-71377693:+|nuORF;ENST00000247087.9_1_1:27875205-27875379:-|nuORF;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;ENST00000508096.1_1_10:126605730-126631034:+|nuORF;LMOD2|p.P448dup|2|0.32|ENSG00000170807|chr7:123662921-123662922|-/CCT|inframe_insertion;NAF1|p.Y466C|1|0.24|ENSG00000145414|chr4:163128985-163128985|T/C|missense_variant;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44;ENST00000560349.1_1_14:24532322-24538610:+|nuORF;nc|ENSG00000186648|Q8ND23-2|CARMIL3;OLFML2A|p.R326Pfs*80|1|0.24|ENSG00000185585|chr9:124804147-124804150|GGCA/-|frameshift_variant;ENSG00000176182|ENST00000322217|MYPOP;ENSG00000204335|ENST00000375281|SP5;ENST00000559694.5_1_14:24530705-24534560:+|nuORF;SP5|p.L264Pfs*118|1|0.23|ENSG00000204335|chr2:170716991-170716992|-/C|frameshift_variant;nc|ENSG00000162458|Q8WUP2-2|FBLIM1;ENSG00000162458|ENST00000375766|FBLIM1;ENSG00000143006|ENST00000371445|DMRTB1;FBLIM1|p.N331Kfs*6|1|0.42|ENSG00000162458|chr1:15777267-15777268|-/A|frameshift_variant;ZBTB7B|p.G247Afs*68|1|0.33|ENSG00000160685|chr1:155015396-155015396|G/-|frameshift_variant;ENSG00000183153|ENST00000578689|GJD3;ENST00000403681.6_2_12:66218024-66218900:+|nuORF;ENSG00000117560|ENST00000367721|FASLG;nc|ENSG00000166582|Q7Z7K6|CENPV;ENSG00000166582|ENST00000299736|CENPV;ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000141431|ENST00000269197|ASXL3;ENSG00000100312|ENST00000216139|ACR;nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B;SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant;SETD1B|p.L1532Ffs*35|1|0.12|ENSG00000139718|chr12:121823172-121823173|-/T|frameshift_variant;SETD1B|p.Q1589Sfs*11|3|0.38|ENSG00000139718|chr12:121823338-121823338|C/-|frameshift_variant;GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion;nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK;ENSG00000112290|ENST00000392589|WASF1;ENST00000379565.7_1_X:20227482-20284914:-|nuORF;ENSG00000168505|ENST00000306318|GBX2;ENSG00000170807|ENST00000458573|LMOD2;ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant;ENSG00000171467|ENST00000361428|ZNF318;RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;ENSG00000173166|ENST00000319170|RAPH1;AHDC1|p.K985Sfs*157|1|0.06|ENSG00000126705|chr1:27549162-27549162|T/-|frameshift_variant;AHDC1|p.F1046Sfs*96|1|0.2|ENSG00000126705|chr1:27548981-27548981|G/-|frameshift_variant;nc|ENSG00000139218|Q99590-2|SCAF11;ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000170004|Q12873-3|CHD3;ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B;KDM6B|p.P544Sfs*11|1|0.14|ENSG00000132510|chr17:7847912-7847913|-/C|frameshift_variant;KDM6B|p.R513Afs*69|1|0.84|ENSG00000132510|chr17:7847819-7847819|C/-|frameshift_variant;KDM6B|p.T676Hfs*8|1|0.18|ENSG00000132510|chr17:7848307-7848308|-/C|frameshift_variant;KDM6B|p.T743Pfs*39|1|0.55|ENSG00000132510|chr17:7848510-7848510|C/-|frameshift_variant;KDM6B|p.P842Hfs*52|1|0.38|ENSG00000132510|chr17:7848808-7848808|C/-|frameshift_variant;KDM6B|p.K1101Rfs*3|1|0.23|ENSG00000132510|chr17:7849583-7849583|C/-|frameshift_variant;ENSG00000187017|ENST00000645284|ESPN;nc|ENSG00000187017|B1AK53-2|ESPN;ENSG00000101901|ENST00000394780|ALG13;nc|ENSG00000101901|Q9NP73-3|ALG13;MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;ENSG00000186648|ENST00000342740|CARMIL3;ENST00000573523.5_1_17:4574736-4578861:-|nuORF;ENSG00000141456|ENST00000572293|PELP1;nc|ENSG00000248905|Q68DA7-5|FMN1 REV__ENSG00000215474|ENST00000425639|SKOR2;ENSG00000141431|ENST00000269197|ASXL3;REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant;REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;REV__nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000139718|Q9UPS6-2|SETD1B;REV__ENSG00000248905|ENST00000616417|FMN1;REV__ENSG00000176624|ENST00000406189|MEX3C;REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion;nc|ENSG00000168297|Q7Z7A4-3|PXK;ENSG00000112290|ENST00000392589|WASF1;REV__nc|ENSG00000154380|Q8N8S7-3|ENAH;REV__ENSG00000112290|ENST00000392589|WASF1;REV__ENSG00000182601|ENST00000331351|HS3ST4;REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant;REV__ENSG00000077420|ENST00000376236|APBB1IP;ENST00000379565.7_1_X:20227482-20284914:-|nuORF;REV__nc|ENSG00000119596|P49750-3|YLPM1;REV__ENSG00000205922|ENST00000382349|ONECUT3;REV__ENSG00000141431|ENST00000269197|ASXL3;ENSG00000168505|ENST00000306318|GBX2;REV__ENSG00000152409|ENST00000396137|JMY;REV__DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant;ENSG00000170807|ENST00000458573|LMOD2;REV__RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;REV__ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant;ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;REV__FBXO11|p.D318Kfs*3|1|0.37|ENSG00000138081|chr2:47833050-47833053|TGTC/-|frameshift_variant;AHDC1|p.K985Sfs*157|1|0.06|ENSG00000126705|chr1:27549162-27549162|T/-|frameshift_variant;nc|ENSG00000139218|Q99590-2|SCAF11;nc|ENSG00000170004|Q12873-3|CHD3;ENSG00000132510|ENST00000448097|KDM6B;ENSG00000187017|ENST00000645284|ESPN;ENSG00000101901|ENST00000394780|ALG13;MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant;REV__nc|ENSG00000157827|Q96PY5|FMNL2;nc|ENSG00000130396|P55196-2|AFDN;ENSG00000186648|ENST00000342740|CARMIL3;ENST00000573523.5_1_17:4574736-4578861:-|nuORF;nc|ENSG00000248905|Q68DA7-5|FMN1;REV__KDM6B|p.K1101Rfs*3|1|0.23|ENSG00000132510|chr17:7849583-7849583|C/-|frameshift_variant;REV__ENSG00000170807|ENST00000458573|LMOD2;REV__ENSG00000187017|ENST00000645284|ESPN;REV__INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant;REV__ENSG00000274209|ENST00000620264|ANTXRL;REV__ENST00000494373.1_1_2:54014190-54014463:+|nuORF;REV__FASLG|p.K141Rfs*3|2|0.35|ENSG00000117560|chr1:172664355-172664355|A/-|frameshift_variant;REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L;REV__TSPYL2|p.I84Sfs*63|2|0.12|ENSG00000184205|chrX:53082741-53082741|G/-|frameshift_variant REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 454.765646 907.516739 0.33137 0.00015069 -0.20728 -9.4265E-05 0.12408 5.6428E-05 454.7654393237725 74.372 4.1436 74.372 72.023 76.167 0 -0.10571 -0.0002983 NaN 11.749 212 118 2 NaN NaN NaN NaN 0 NaN NaN 0 3436000 28145 19033;15888;12455;25559;16390;24159;19818;14365;15291;13679;11436;19606;7089;18790;25562;4231;3736;18515;6145;17179;15584;4261;4362;6097;18332;3607;7073;19493;16120;18180;19071;19925;22364;23523;12622;17310;19691;2095;102;16436;6271;23986;17109;5916;13137;9298;2681;5894;11841;12154;25493 18779 18786 0.05928178253805072 LPPPPPPPP 9 Unmodified _LPPPPPPPP_ 0 0 0 ZNF318|p.I1440M|1|0.43|ENSG00000171467|chr6:43339678-43339678|T/C|missense_variant;ENSG00000156232|ENST00000286760|WHAMM;ENSG00000188070|ENST00000433688|ZFTA;nc|ENSG00000168066|Q15637-5|SF1;ENSG00000077420|ENST00000376236|APBB1IP;ENSG00000139800|ENST00000267294|ZIC5;nc|ENSG00000160685|O15156-2|ZBTB7B;ENSG00000160685|ENST00000535420|ZBTB7B;ENSG00000145414|ENST00000274054|NAF1;SHROOM3|p.T1603Nfs*9|1|0.64|ENSG00000138771|chr4:76756543-76756544|-/A|frameshift_variant;ENSG00000248905|ENST00000616417|FMN1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7|TRERF1;nc|ENSG00000184922|O95466-3|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;ENSG00000184922|ENST00000331495|FMNL1;TRERF1|p.F853Rfs*6|2|0.34|ENSG00000124496|chr6:42256748-42256751|CAAA/-|frameshift_variant;ENSG00000176165|ENST00000313071|FOXG1;ENSG00000204334|ENST00000697325|ERICH2;ENSG00000126460|ENST00000246794|PRRG2;FBLIM1|p.P142Rfs*59|1|0.38|ENSG00000162458|chr1:15767546-15767546|C/-|frameshift_variant;ENST00000597121.5_1_19:50086773-50093643:+|nuORF;ENST00000584214.1_1_17:16253243-16256750:-|nuORF;ENSG00000175785|ENST00000393140|PRIMA1;FASLG|p.K141Rfs*3|2|0.35|ENSG00000117560|chr1:172664355-172664355|A/-|frameshift_variant;nc|ENSG00000117560|P48023-2|FASLG;nc|ENSG00000175785|Q86XR5-2|PRIMA1;ENST00000361272.8_2_8:17102747-17104366:-|nuORF;ENST00000596700.5_1_19:50084718-50093643:+|nuORF;ENST00000370452.7_1_6:71377516-71377693:+|nuORF;ENST00000247087.9_1_1:27875205-27875379:-|nuORF;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;ENST00000508096.1_1_10:126605730-126631034:+|nuORF;LMOD2|p.P448dup|2|0.32|ENSG00000170807|chr7:123662921-123662922|-/CCT|inframe_insertion;NAF1|p.Y466C|1|0.24|ENSG00000145414|chr4:163128985-163128985|T/C|missense_variant;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44;ENST00000560349.1_1_14:24532322-24538610:+|nuORF;nc|ENSG00000186648|Q8ND23-2|CARMIL3;OLFML2A|p.R326Pfs*80|1|0.24|ENSG00000185585|chr9:124804147-124804150|GGCA/-|frameshift_variant;ENSG00000176182|ENST00000322217|MYPOP;ENSG00000204335|ENST00000375281|SP5;ENST00000559694.5_1_14:24530705-24534560:+|nuORF;SP5|p.L264Pfs*118|1|0.23|ENSG00000204335|chr2:170716991-170716992|-/C|frameshift_variant;nc|ENSG00000162458|Q8WUP2-2|FBLIM1;ENSG00000162458|ENST00000375766|FBLIM1;ENSG00000143006|ENST00000371445|DMRTB1;FBLIM1|p.N331Kfs*6|1|0.42|ENSG00000162458|chr1:15777267-15777268|-/A|frameshift_variant;ZBTB7B|p.G247Afs*68|1|0.33|ENSG00000160685|chr1:155015396-155015396|G/-|frameshift_variant;ENSG00000183153|ENST00000578689|GJD3;ENST00000403681.6_2_12:66218024-66218900:+|nuORF;ENSG00000117560|ENST00000367721|FASLG;nc|ENSG00000166582|Q7Z7K6|CENPV;ENSG00000166582|ENST00000299736|CENPV;ENSG00000138771|ENST00000296043|SHROOM3;ENSG00000141431|ENST00000269197|ASXL3;ENSG00000100312|ENST00000216139|ACR;nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B;SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant;SETD1B|p.L1532Ffs*35|1|0.12|ENSG00000139718|chr12:121823172-121823173|-/T|frameshift_variant;SETD1B|p.Q1589Sfs*11|3|0.38|ENSG00000139718|chr12:121823338-121823338|C/-|frameshift_variant;GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion;nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK;ENSG00000112290|ENST00000392589|WASF1;ENST00000379565.7_1_X:20227482-20284914:-|nuORF;ENSG00000168505|ENST00000306318|GBX2;ENSG00000170807|ENST00000458573|LMOD2;ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant;ENSG00000171467|ENST00000361428|ZNF318;RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;ENSG00000173166|ENST00000319170|RAPH1;AHDC1|p.K985Sfs*157|1|0.06|ENSG00000126705|chr1:27549162-27549162|T/-|frameshift_variant;AHDC1|p.F1046Sfs*96|1|0.2|ENSG00000126705|chr1:27548981-27548981|G/-|frameshift_variant;nc|ENSG00000139218|Q99590-2|SCAF11;ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000170004|Q12873-3|CHD3;ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B;KDM6B|p.P544Sfs*11|1|0.14|ENSG00000132510|chr17:7847912-7847913|-/C|frameshift_variant;KDM6B|p.R513Afs*69|1|0.84|ENSG00000132510|chr17:7847819-7847819|C/-|frameshift_variant;KDM6B|p.T676Hfs*8|1|0.18|ENSG00000132510|chr17:7848307-7848308|-/C|frameshift_variant;KDM6B|p.T743Pfs*39|1|0.55|ENSG00000132510|chr17:7848510-7848510|C/-|frameshift_variant;KDM6B|p.P842Hfs*52|1|0.38|ENSG00000132510|chr17:7848808-7848808|C/-|frameshift_variant;KDM6B|p.K1101Rfs*3|1|0.23|ENSG00000132510|chr17:7849583-7849583|C/-|frameshift_variant;ENSG00000187017|ENST00000645284|ESPN;nc|ENSG00000187017|B1AK53-2|ESPN;ENSG00000101901|ENST00000394780|ALG13;nc|ENSG00000101901|Q9NP73-3|ALG13;MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;ENSG00000186648|ENST00000342740|CARMIL3;ENST00000573523.5_1_17:4574736-4578861:-|nuORF;ENSG00000141456|ENST00000572293|PELP1;nc|ENSG00000248905|Q68DA7-5|FMN1 REV__ENSG00000215474|ENST00000425639|SKOR2;ENSG00000141431|ENST00000269197|ASXL3;REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant;REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;REV__nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000139718|Q9UPS6-2|SETD1B;REV__ENSG00000248905|ENST00000616417|FMN1;REV__ENSG00000176624|ENST00000406189|MEX3C;REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion;nc|ENSG00000168297|Q7Z7A4-3|PXK;ENSG00000112290|ENST00000392589|WASF1;REV__nc|ENSG00000154380|Q8N8S7-3|ENAH;REV__ENSG00000112290|ENST00000392589|WASF1;REV__ENSG00000182601|ENST00000331351|HS3ST4;REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant;REV__ENSG00000077420|ENST00000376236|APBB1IP;ENST00000379565.7_1_X:20227482-20284914:-|nuORF;REV__nc|ENSG00000119596|P49750-3|YLPM1;REV__ENSG00000205922|ENST00000382349|ONECUT3;REV__ENSG00000141431|ENST00000269197|ASXL3;ENSG00000168505|ENST00000306318|GBX2;REV__ENSG00000152409|ENST00000396137|JMY;REV__DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant;ENSG00000170807|ENST00000458573|LMOD2;REV__RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;REV__ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant;ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;REV__FBXO11|p.D318Kfs*3|1|0.37|ENSG00000138081|chr2:47833050-47833053|TGTC/-|frameshift_variant;AHDC1|p.K985Sfs*157|1|0.06|ENSG00000126705|chr1:27549162-27549162|T/-|frameshift_variant;nc|ENSG00000139218|Q99590-2|SCAF11;nc|ENSG00000170004|Q12873-3|CHD3;ENSG00000132510|ENST00000448097|KDM6B;ENSG00000187017|ENST00000645284|ESPN;ENSG00000101901|ENST00000394780|ALG13;MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant;REV__nc|ENSG00000157827|Q96PY5|FMNL2;nc|ENSG00000130396|P55196-2|AFDN;ENSG00000186648|ENST00000342740|CARMIL3;ENST00000573523.5_1_17:4574736-4578861:-|nuORF;nc|ENSG00000248905|Q68DA7-5|FMN1;REV__KDM6B|p.K1101Rfs*3|1|0.23|ENSG00000132510|chr17:7849583-7849583|C/-|frameshift_variant;REV__ENSG00000170807|ENST00000458573|LMOD2;REV__ENSG00000187017|ENST00000645284|ESPN;REV__INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant;REV__ENSG00000274209|ENST00000620264|ANTXRL;REV__ENST00000494373.1_1_2:54014190-54014463:+|nuORF;REV__FASLG|p.K141Rfs*3|2|0.35|ENSG00000117560|chr1:172664355-172664355|A/-|frameshift_variant;REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L;REV__TSPYL2|p.I84Sfs*63|2|0.12|ENSG00000184205|chrX:53082741-53082741|G/-|frameshift_variant REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 454.765646 907.516739 -0.036353 -1.6532E-05 0.23573 0.0001072 0.19937 9.0668E-05 454.76565584797817 78.194 6.5573 74.535 72.349 78.907 -3.6588 0.057965 0.00010464 NaN 11.749 316 187 3 NaN NaN NaN NaN 0 NaN NaN 0 3077700 28146 19033;15888;12455;25559;16390;24159;19818;14365;15291;13679;11436;19606;7089;18790;25562;4231;3736;18515;6145;17179;15584;4261;4362;6097;18332;3607;7073;19493;16120;18180;19071;19925;22364;23523;12622;17310;19691;2095;102;16436;6271;23986;17109;5916;13137;9298;2681;5894;11841;12154;25493 18779 18786 0.05928178253805072 LPPPQSDVTL 10 Unmodified _LPPPQSDVTL_ 0 0 0 ENSG00000109101|ENST00000579795|FOXN1;FOXN1|p.P583Lfs*5|1|0.16|ENSG00000109101|chr17:28537232-28537232|C/-|frameshift_variant;FOXN1|p.P416Qfs*134|1|0.33|ENSG00000109101|chr17:28534814-28534814|C/-|frameshift_variant ENSG00000109101|ENST00000579795|FOXN1 ENSG00000109101|ENST00000579795|FOXN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.282470703125 2 533.792589 1065.57063 0.25066 0.0001338 -0.21553 -0.00011505 0.035132 1.8753E-05 533.7925956207622 89.426 0.35628 85.648 85.448 85.804 -3.7779 15 9 2 0 0 0 0.86078 1 17146 17146 8.1555 8.1555 1 1207700 28147 2516 18780 18787 27756 27756 0.04046305894848956 LPPRIRPQKKR 11 Unmodified _LPPRIRPQKKR_ 0 0 0 ENSG00000159714|ENST00000565726|ZDHHC1 ENSG00000159714|ENST00000565726|ZDHHC1 ENSG00000159714|ENST00000565726|ZDHHC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 463.6377258300781 3 463.636883 1387.88882 NaN NaN NaN NaN NaN NaN NaN 164.21 1 159.15 158.65 159.65 -5.0648 0 0 0 0.22632 1 32007 32007 0.0059557 0.0053913 1 28148 5216 18781 18788 27757 27757 0.21039197661639264 LPPSLCDLL 9 Unmodified _LPPSLCDLL_ 0 0 0 ENST00000448463.1_1_21:15399826-15399883:+|nuORF ENST00000448463.1_1_21:15399826-15399883:+|nuORF ENST00000448463.1_1_21:15399826-15399883:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1722717285156 3 324.180778 969.520504 NaN NaN NaN NaN NaN NaN NaN 75.113 1 71.519 71.019 72.019 -3.594 0 0 0 0.23508 1 14276 14276 1.1933 0 1 28149 9955 18782 18789 27758 27758 0.03452479965346811 LPPVDLSLV 9 Unmodified _LPPVDLSLV_ 0 0 0 nc|ENSG00000115919|Q16719-2|KYNU;KYNU|p.S332Kfs*13|1|0.16|ENSG00000115919|chr2:143033272-143033273|TT/-|frameshift_variant;ENSG00000115919|ENST00000264170|KYNU nc|ENSG00000115919|Q16719-2|KYNU nc|ENSG00000115919|Q16719-2|KYNU MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.19610595703125 3 318.195304 951.564084 NaN NaN NaN NaN NaN NaN NaN 117.16 1 112.58 112.08 113.08 -4.5815 0 0 0 0.23508 1 22481 22481 2.7352 0 1 28150 2893 18783 18790 27759 27759 0.08636412734153964 LPPVDLSLV 9 Unmodified _LPPVDLSLV_ 0 0 0 nc|ENSG00000115919|Q16719-2|KYNU;KYNU|p.S332Kfs*13|1|0.16|ENSG00000115919|chr2:143033272-143033273|TT/-|frameshift_variant;ENSG00000115919|ENST00000264170|KYNU nc|ENSG00000115919|Q16719-2|KYNU nc|ENSG00000115919|Q16719-2|KYNU MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.1967468261719 3 318.195304 951.564084 NaN NaN NaN NaN NaN NaN NaN 128.94 1 124.2 123.7 124.7 -4.7408 0 0 0 0.23508 1 24811 24811 1.0715 0 1 28151 2893 18783 18790 27760 27760 0.08636412734153964 LPPYPLPKA 9 Unmodified _LPPYPLPKA_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.L612Pfs*8|1|0.29|ENSG00000113360|chr5:31493214-31493215|-/G|frameshift_variant;DROSHA|p.E310Sfs*42|1|0.42|ENSG00000113360|chr5:31521143-31521143|T/-|frameshift_variant nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 498.39385986328125 2 498.299853 994.585153 NaN NaN NaN NaN NaN NaN NaN 160.03 1 160.03 159.53 160.53 0 0 0 0 0.23508 1 32133 32133 4.756 0.42677 1 28152 2738 18784 18791 27761 27761 0.08764422833655772 LPQAAPLGRAS 11 Unmodified _LPQAAPLGRAS_ 0 0 0 REV__ENSG00000124257|ENST00000372518|NEURL2 REV__ENSG00000124257|ENST00000372518|NEURL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2821655273438 2 540.811648 1079.60874 0.3213 0.00017376 -0.12224 -6.6107E-05 0.19906 0.00010766 541.3149642951129 151.76 0.20917 147 146.81 147.02 -4.7523 8 5 2 0 0 0 0.57511 1 30144 30144 19.362 6.8304 1 810960 + 28153 15769 18785 18792 27762 27762 0.07212236600162214 LPQICSFVRFW 11 Unmodified _LPQICSFVRFW_ 0 0 0 ENST00000379141.8_2_12:59268259-59270328:-|nuORF ENST00000379141.8_2_12:59268259-59270328:-|nuORF ENST00000379141.8_2_12:59268259-59270328:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 697.9917602539062 2 698.365733 1394.71691 NaN NaN NaN NaN NaN NaN NaN 170.18 1 165.39 164.89 165.89 -4.7898 0 0 0 0.22632 1 34522 34522 0.11104 0.047177 1 28154 9290 18786 18793 27763 27763 0.0353428485909717 LPQPPSRRL 9 Unmodified _LPQPPSRRL_ 0 0 0 ENST00000372764.3_1_10:75670961-75671806:+|nuORF ENST00000372764.3_1_10:75670961-75671806:+|nuORF ENST00000372764.3_1_10:75670961-75671806:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 355.51947021484375 3 355.217214 1062.62981 NaN NaN NaN NaN NaN NaN NaN 66.12 1 62.623 62.123 63.123 -3.4965 0 0 0 0.19512 1 12385 12385 12.241 5.6103 1 28155 9186 18787 18794 27764 27764 0.101002466996988 LPQQFSQSF 9 Unmodified _LPQQFSQSF_ 0 0 0 REV__SLC6A15|p.Q248Kfs*11|1|0.05|ENSG00000072041|chr12:84883873-84883874|-/TTTT|frameshift_variant REV__SLC6A15|p.Q248Kfs*11|1|0.05|ENSG00000072041|chr12:84883873-84883874|-/TTTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2693481445312 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 138.59 1 133.94 133.44 134.44 -4.6413 0 0 0 0.22251 1 27363 27363 16.942 1.0951 1 + 28156 14277 18788 18795 27765 27765 -0.01303133936426093 LPQQLHSTY 9 Unmodified _LPQQLHSTY_ 0 0 0 REV__KLF3|p.Q227Afs*37|1|0.46|ENSG00000109787|chr4:38689854-38689855|-/C|frameshift_variant REV__KLF3|p.Q227Afs*37|1|0.46|ENSG00000109787|chr4:38689854-38689855|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7800903320312 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 156.16 1 150.87 150.37 151.37 -5.2854 0 0 0 0.23508 1 30292 30292 8.5933 0.68312 1 + 28157 23720 18789 18796 27766 27766 0.01120554954900399 LPQYEKNFRD 10 Unmodified _LPQYEKNFRD_ 0 0 0 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22174072265625 3 437.222693 1308.64625 NaN NaN NaN NaN NaN NaN NaN 134.2 1 129.33 128.83 129.83 -4.8726 0 0 0 2.8426 1 25780 25780 0.063865 0.032455 1 28158 2539 18790 18797 27767 27767 0.004272830751233414 LPRARGYRY 9 Unmodified _LPRARGYRY_ 0 0 0 HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|42|1|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|42|1|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|42|1|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3217163085938 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 120.94 1 116.41 115.91 116.91 -4.5305 0 0 0 0.19652 1 23289 23289 1.2148 1.1416 1 28159 11884 18791 18798 27768 27768 0.06666764931219404 LPRCLALP 8 Unmodified _LPRCLALP_ 0 0 0 REV__AMT|p.P20L|1|0.14|ENSG00000145020|chr3:49422392-49422392|G/A|missense_variant REV__AMT|p.P20L|1|0.14|ENSG00000145020|chr3:49422392-49422392|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 441.76348876953125 2 441.765123 881.515694 NaN NaN NaN NaN NaN NaN NaN 136.95 1 132.31 131.81 132.81 -4.6413 0 0 0 0.23294 1 27024 27024 0.62683 0.56284 1 + 28160 13042 18792 18799 27769 27769 0.07019640613236788 LPRCRVVVK 9 Unmodified _LPRCRVVVK_ 0 0 0 REV__nc|ENSG00000131437|Q9Y496|KIF3A REV__nc|ENSG00000131437|Q9Y496|KIF3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0669860839844 3 357.226944 1068.659 -0.20186 -7.2109E-05 0.55556 0.00019846 0.3537 0.00012635 357.56199176585244 25.499 0.48586 25.499 25.358 25.843 0 20 13 2 0 0 0 0.84582 1 4418 4418 4.897 2.3985 1 7455900 + 28161 16073 18793 18800 27770 27770 0.12742067724320805 LPRCTDVH 8 Unmodified _LPRCTDVH_ 0 0 0 ENST00000561677.6_1_16:69782679-69783527:-|nuORF ENST00000561677.6_1_16:69782679-69783527:-|nuORF ENST00000561677.6_1_16:69782679-69783527:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.1466369628906 3 314.160488 939.459635 NaN NaN NaN NaN NaN NaN NaN 60.87 1 57.937 57.437 58.437 -2.9333 0 0 0 0.21486 1 11722 11722 1.8442 0 1 28162 11306 18794 18801 27771 27771 -0.012516122942315633 LPRGQWWR 8 Unmodified _LPRGQWWR_ 0 0 0 REV__ENST00000355897.9_1_3:169755907-169797573:+|nuORF REV__ENST00000355897.9_1_3:169755907-169797573:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.2041320800781 3 366.870037 1097.58828 0.32359 0.00011871 -0.8974 -0.00032923 -0.57382 -0.00021052 367.2042012640499 30.609 0.3549 28.716 28.485 28.84 -1.8928 12 9 2 0 0 0 0.81659 1 5235 5235 3.5965 1.098 1 760200 + 28163 20801 18795 18802 27772 27772 0.043391107310071675 LPRGQWWR 8 Unmodified _LPRGQWWR_ 0 0 0 REV__ENST00000355897.9_1_3:169755907-169797573:+|nuORF REV__ENST00000355897.9_1_3:169755907-169797573:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 366.870037 1097.58828 0.17102 6.2744E-05 -1.3785 -0.00050572 -1.2074 -0.00044298 366.86952597200076 30.764 0.35346 28.647 28.435 28.789 -2.1167 -0.00076373 -0.00037276 NaN 3.5965 15 9 3 NaN NaN NaN NaN 0 NaN NaN 0 515220 + 28164 20801 18795 18802 0.043391107310071675 LPRGQWWR 8 Unmodified _LPRGQWWR_ 0 0 0 REV__ENST00000355897.9_1_3:169755907-169797573:+|nuORF REV__ENST00000355897.9_1_3:169755907-169797573:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 366.870037 1097.58828 -0.15671 -5.7492E-05 -0.70346 -0.00025808 -0.86017 -0.00031557 366.8696507757799 30.654 0.28051 28.58 28.464 28.744 -2.0743 -0.067882 0.00037016 NaN 3.5965 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 275010 + 28165 20801 18795 18802 0.043391107310071675 LPRHQHGVR 9 Unmodified _LPRHQHGVR_ 0 0 0 REV__ENST00000309890.11_1_17:3846802-3850979:-|nuORF REV__ENST00000309890.11_1_17:3846802-3850979:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.2041320800781 3 367.212574 1098.61589 0.32069 0.00011776 -1.6671 -0.00061217 -1.3464 -0.0004944 367.2119790424078 30.68 0.45656 28.787 28.522 28.979 -1.8928 16 12 2 0 0 0 0.88054 1 5235 5235 4.5289 1.2476 1 1079600 + 28166 20473 18796 18803 27773 27773 0.07053013991276202 LPRHQHGVR 9 Unmodified _LPRHQHGVR_ 0 0 0 REV__ENST00000309890.11_1_17:3846802-3850979:-|nuORF REV__ENST00000309890.11_1_17:3846802-3850979:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 367.212574 1098.61589 -0.16408 -6.0251E-05 -1.7545 -0.00064428 -1.9186 -0.00070454 367.21189817834215 28.941 0.35084 28.941 28.774 29.125 0 0.10946 -0.00021346 NaN 4.5289 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1016100 + 28167 20473 18796 18803 0.07053013991276202 LPRHQHGVR 9 Unmodified _LPRHQHGVR_ 0 0 0 REV__ENST00000309890.11_1_17:3846802-3850979:-|nuORF REV__ENST00000309890.11_1_17:3846802-3850979:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 367.212574 1098.61589 0.15598 5.7278E-05 -1.7788 -0.00065318 -1.6228 -0.0005959 367.2119528088287 30.896 0.56286 28.78 28.435 28.998 -2.1167 -0.052002 -0.00024015 NaN 4.5289 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 739820 + 28168 20473 18796 18803 0.07053013991276202 LPRHQHGVR 9 Unmodified _LPRHQHGVR_ 0 0 0 REV__ENST00000309890.11_1_17:3846802-3850979:-|nuORF REV__ENST00000309890.11_1_17:3846802-3850979:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 367.212574 1098.61589 -0.16398 -6.0216E-05 -1.1328 -0.00041597 -1.2968 -0.00047619 367.2120526039498 30.892 0.45683 28.818 28.5 28.956 -2.0743 -0.013415 0.00047148 NaN 4.5289 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 860400 + 28169 20473 18796 18803 0.07053013991276202 LPRIWFVWHDD 11 Unmodified _LPRIWFVWHDD_ 0 0 0 REV__AQP2|p.G207R|1|0.28|ENSG00000167580|chr12:49955411-49955411|G/A|missense_variant REV__AQP2|p.G207R|1|0.28|ENSG00000167580|chr12:49955411-49955411|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3773803710938 2 742.377686 1482.74082 NaN NaN NaN NaN NaN NaN NaN 170.95 1 166.16 165.66 166.66 -4.7898 0 0 0 0.22632 1 34729 34729 0.00056442 0 1 + 28170 13090 18797 18804 27774 27774 0.01875841617129481 LPRKELILI 9 Unmodified _LPRKELILI_ 0 0 0 REV__ENST00000315762.5_9:67793260-67793749:+|nuORF REV__ENST00000315762.5_9:67793260-67793749:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7711181640625 2 547.868434 1093.72232 NaN NaN NaN NaN NaN NaN NaN 163.98 1 158.91 158.41 159.41 -5.0648 0 0 0 0.23508 1 31942 31942 8.5933 0.68312 1 + 28171 20519 18798 18805 27775 27775 0.17920331713230553 LPRKLKRI 8 Unmodified _LPRKLKRI_ 0 0 0 nc|ENSG00000142185|O94759-2|TRPM2;ENSG00000142185|ENST00000397928|TRPM2 nc|ENSG00000142185|O94759-2|TRPM2 nc|ENSG00000142185|O94759-2|TRPM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.0001220703125 2 512.361111 1022.70767 0.20993 0.00010756 -0.8186 -0.00041942 -0.60867 -0.00031186 512.8623879868591 156.18 0.17174 156.18 156.11 156.28 0 5 4 2 0 0 0 1.0249 1 31345 31345 0.69038 0.16561 1 3451200 28172 4408 18799 18806 27776 27776 0.1972230435574147 LPRLPIPKL 9 Unmodified _LPRLPIPKL_ 0 0 0 ENST00000468572.2_2_1:53662615-53668106:+|nuORF;ENSG00000157184|ENST00000371486|CPT2 ENST00000468572.2_2_1:53662615-53668106:+|nuORF ENST00000468572.2_2_1:53662615-53668106:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6928100585938 2 523.85787 1045.70119 NaN NaN NaN NaN NaN NaN NaN 164.03 1 158.99 158.49 159.49 -5.0446 0 0 0 0.19622 1 31957 31957 0.96228 0.75542 1 28173 5120 18800 18807 27777 27777 0.18016366404344808 LPRNLRKRV 9 Unmodified _LPRNLRKRV_ 0 0 0 REV__ENSG00000100412|ENST00000216254|ACO2 REV__ENSG00000100412|ENST00000216254|ACO2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3377685546875 2 576.377823 1150.74109 NaN NaN NaN NaN NaN NaN NaN 145.87 1 140.76 140.26 141.26 -5.1108 0 0 0 0.23508 1 28201 28201 2.0598 0 1 + 28174 14709 18801 18808 27778 27778 0.1717530612761493 LPRPSHCPDR 10 Unmodified _LPRPSHCPDR_ 0 0 0 ENST00000413916.5_1_7:44797615-44799012:+|nuORF ENST00000413916.5_1_7:44797615-44799012:+|nuORF ENST00000413916.5_1_7:44797615-44799012:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 393.2975158691406 3 393.201346 1176.58221 NaN NaN NaN NaN NaN NaN NaN 54.402 1 51.264 50.764 51.764 -3.1377 0 0 0 0.22588 1 10067 10067 6.1918 0.40842 1 28175 9597 18802 18809 27779 27779 0.0009822443716984708 LPRQIAIRQ 9 Unmodified _LPRQIAIRQ_ 0 0 0 REV__ENST00000487169.5_1_2:242182083-242186294:-|nuORF REV__ENST00000487169.5_1_2:242182083-242186294:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7821655273438 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.2329 1 9.2329 8.7329 9.7329 0 0 0 0 0.23508 1 1046 1046 0.52476 0 1 + 28176 22253 18803 18810 27780 27780 0.1289222210805292 LPRRAPKRL 9 Unmodified _LPRRAPKRL_ 0 0 0 ENST00000609879.1_1_1:149399040-149399154:-|nuORF ENST00000609879.1_1_1:149399040-149399154:-|nuORF ENST00000609879.1_1_1:149399040-149399154:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 553.6275634765625 2 553.867092 1105.71963 NaN NaN NaN NaN NaN NaN NaN 169.55 1 164.68 164.18 165.18 -4.873 0 0 0 0.19634 1 33496 33496 0.073264 0 1 28177 11772 18804 18811 27781 27781 0.17099921098906634 LPRRCHRQS 9 Unmodified _LPRRCHRQS_ 0 0 0 ENST00000263650.11_1_11:3143264-3147722:-|nuORF ENST00000263650.11_1_11:3143264-3147722:-|nuORF ENST00000263650.11_1_11:3143264-3147722:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3177490234375 2 576.81199 1151.60943 -0.44602 -0.00025727 -2.4885 -0.0014354 -2.9345 -0.0016926 576.8106297023097 15.648 0.2038 14.426 14.266 14.47 -1.2219 6 5 2 0 0 0 0.87634 1 2201 2201 6.7232 0 1 499490 28178 8326 18805 18812 27782 27782 0.03968752768241757 LPRRRGLRKKK 11 Unmodified _LPRRRGLRKKK_ 0 0 0 NEUROD6|p.T84Dfs*43|1|0.33|ENSG00000164600|chr7:31339020-31339021|-/T|frameshift_variant;ENSG00000164600|ENST00000297142|NEUROD6 NEUROD6|p.T84Dfs*43|1|0.33|ENSG00000164600|chr7:31339020-31339021|-/T|frameshift_variant NEUROD6|p.T84Dfs*43|1|0.33|ENSG00000164600|chr7:31339020-31339021|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 704.388916015625 2 704.478403 1406.94225 NaN NaN NaN NaN NaN NaN NaN 172.65 1 172.65 172.15 173.15 0 0 0 0 0.23698 1 35652 35652 0.30703 0.30703 1 28179 5554 18806 18813 27783 27783 0.25505995164144224 LPRRVPIGH 9 Unmodified _LPRRVPIGH_ 0 0 0 ENST00000566809.1_1_15:72523769-72523925:-|nuORF ENST00000566809.1_1_15:72523769-72523925:-|nuORF ENST00000566809.1_1_15:72523769-72523925:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2803344726562 2 522.824892 1043.63523 0.23862 0.00012476 -0.85715 -0.00044814 -0.61852 -0.00032338 522.8235963437721 28.529 0.17699 28.529 28.421 28.598 0 5 4 2 0 0 0 0.86532 1 5073 5073 4.756 0.81161 1 304530 28180 11373 18807 18814 27784 27784 0.11515970282152921 LPRVPQLQST 10 Unmodified _LPRVPQLQST_ 0 0 0 REV__FKBP15|p.V477I|1|0.11|ENSG00000119321|chr9:113186318-113186318|C/T|missense_variant REV__FKBP15|p.V477I|1|0.11|ENSG00000119321|chr9:113186318-113186318|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 380.2647399902344 3 380.224146 1137.65061 NaN NaN NaN NaN NaN NaN NaN 177.23 1 172.36 171.86 172.86 -4.8739 0 0 0 0.22588 1 35268 35268 1.7423 0.52744 1 + 28181 15576 18808 18815 27785 27785 0.08728792288707155 LPSAATSTAP 10 Unmodified _LPSAATSTAP_ 0 0 0 REV__ENSG00000237330|ENST00000453464|RNF223 REV__ENSG00000237330|ENST00000453464|RNF223 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23309326171875 2 458.242732 914.470912 0.28314 0.00012975 0.26822 0.00012291 0.55135 0.00025265 458.24283143633727 30.194 1.8549 28.301 27.651 29.506 -1.8928 165 52 5 0 0 0 0.35262 1 5343 5343 0.51642 0 1 75773000 + 28182 19769 18809 18816 27786 27786 0.010254882809022092 LPSARPHLPV 10 Unmodified _LPSARPHLPV_ 0 0 0 ENST00000246553.3_1_19:35843468-35843927:+|nuORF ENST00000246553.3_1_19:35843468-35843927:+|nuORF ENST00000246553.3_1_19:35843468-35843927:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7763061523438 2 543.824558 1085.63456 0.33572 0.00018257 1.1531 0.00062708 1.4888 0.00080965 543.824122781597 136.99 0.16919 136.99 136.86 137.03 0 5 4 2 0 0 0 0.43819 1 27133 27133 0.51642 0 1 2788700 28183 8209 18810 18817 27787 27787 0.09517130842459665 LPSFWIKA 8 Unmodified _LPSFWIKA_ 0 0 0 ENSG00000232040|ENST00000452236|SCAND3 ENSG00000232040|ENST00000452236|SCAND3 ENSG00000232040|ENST00000452236|SCAND3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2359313964844 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 159.67 1 154.87 154.37 155.37 -4.7952 0 0 0 0.21486 1 31747 31747 9.3474 0 1 28184 7811 18811 18818 27788 27788 0.061438671451242044 LPSLGQSVPG 10 Unmodified _LPSLGQSVPG_ 0 0 0 REV__nc|ENSG00000131196|O95644-17|NFATC1 REV__nc|ENSG00000131196|O95644-17|NFATC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7293701171875 2 477.766374 953.518196 -0.31358 -0.00014982 -1.615 -0.00077161 -1.9286 -0.00092143 477.7666816662096 93.039 0.30996 93.039 92.783 93.092 0 12 8 2 0 0 0 0.46704 1 18206 18206 0.063865 0.032455 1 650910 + 28185 16061 18812 18819 27789 27789 0.0395776755190127 LPSLGQSVPG 10 Unmodified _LPSLGQSVPG_ 0 0 0 REV__nc|ENSG00000131196|O95644-17|NFATC1 REV__nc|ENSG00000131196|O95644-17|NFATC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.766374 953.518196 -0.31358 -0.00014982 -1.615 -0.00077161 -1.9286 -0.00092143 477.7666816662096 93.039 0.30996 93.039 92.783 93.092 0 0.20418 -0.0017169 NaN 0.063865 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 650910 + 28186 16061 18812 18819 0.0395776755190127 LPSLGQSVPG 10 Unmodified _LPSLGQSVPG_ 0 0 0 REV__nc|ENSG00000131196|O95644-17|NFATC1 REV__nc|ENSG00000131196|O95644-17|NFATC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.766374 953.518196 0.11954 5.711E-05 1.1859 0.00056659 1.3054 0.0006237 477.7662581344646 96.92 0.41106 92.685 92.505 92.916 -4.2348 -0.14995 0.00095948 NaN 0.063865 16 11 3 NaN NaN NaN NaN 0 NaN NaN 0 842430 + 28187 16061 18812 18819 0.0395776755190127 LPSLGQSVPG 10 Unmodified _LPSLGQSVPG_ 0 0 0 REV__nc|ENSG00000131196|O95644-17|NFATC1 REV__nc|ENSG00000131196|O95644-17|NFATC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.766374 953.518196 -0.03479 -1.6621E-05 1.1064 0.00052862 1.0716 0.000512 477.7664520286625 96.7 0.44906 92.781 92.504 92.953 -3.9194 -0.054223 0.00088354 NaN 0.063865 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 609790 + 28188 16061 18812 18819 0.0395776755190127 LPSPNLESGAP 11 Unmodified _LPSPNLESGAP_ 0 0 0 LIMD1|p.N282S|1|0.37|ENSG00000144791|chr3:45595724-45595724|A/G|missense_variant LIMD1|p.N282S|1|0.37|ENSG00000144791|chr3:45595724-45595724|A/G|missense_variant LIMD1|p.N282S|1|0.37|ENSG00000144791|chr3:45595724-45595724|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2776489257812 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 174.79 1 170 169.5 170.5 -4.7898 0 0 0 0.22862 1 35718 35718 9.3831 0.63772 1 28189 12076 18813 18820 27790 27790 0.008088313724556428 LPSQRGLC 8 Unmodified _LPSQRGLC_ 0 0 0 REV__ZNF2|p.F183Lfs*38|1|0.21|ENSG00000275111|chr2:95181372-95181372|T/-|frameshift_variant REV__ZNF2|p.F183Lfs*38|1|0.21|ENSG00000275111|chr2:95181372-95181372|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2353515625 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 137.68 1 132.76 132.26 133.26 -4.9216 0 0 0 0.21486 1 26469 26469 8.5933 0 1 + 28190 19930 18814 18821 27791 27791 0.012492891941178641 LPSTPMPM 8 Unmodified _LPSTPMPM_ 0 0 0 REV__nc|ENSG00000176046|O60356-2|NUPR1 REV__nc|ENSG00000176046|O60356-2|NUPR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21466064453125 2 437.214075 872.413596 NaN NaN NaN NaN NaN NaN NaN 51.32 1 51.32 50.82 51.82 0 0 0 0 0.21486 1 9734 9734 10.183 0 1 + 28191 24182 18815 18822 27792 27792 -0.02771393520674792 LPSTPMPM 8 Unmodified _LPSTPMPM_ 0 0 0 REV__nc|ENSG00000176046|O60356-2|NUPR1 REV__nc|ENSG00000176046|O60356-2|NUPR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2160339355469 2 437.214075 872.413596 NaN NaN NaN NaN NaN NaN NaN 98.575 1 94.306 93.806 94.806 -4.2692 0 0 0 0.21486 1 18845 18845 10.183 4.423 1 + 28192 24182 18815 18822 27793 27793 -0.02771393520674792 LPSWRIGPSCE 11 Unmodified _LPSWRIGPSCE_ 0 0 0 REV__JADE1|p.R394Gfs*20|2|0.47|ENSG00000077684|chr4:128861897-128861897|C/-|frameshift_variant REV__JADE1|p.R394Gfs*20|2|0.47|ENSG00000077684|chr4:128861897-128861897|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.753173828125 2 622.808248 1243.60194 NaN NaN NaN NaN NaN NaN NaN 147.37 1 142.69 142.19 143.19 -4.6868 0 0 0 0.23324 1 29238 29238 5.7319 0.43497 1 + 28193 23688 18816 18823 27794 27794 -0.010114443427028164 LPSYRFRYRRR 11 Unmodified _LPSYRFRYRRR_ 0 0 0 ENSG00000142408|ENST00000270458|CACNG8 ENSG00000142408|ENST00000270458|CACNG8 ENSG00000142408|ENST00000270458|CACNG8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3959350585938 2 785.4473 1568.88005 NaN NaN NaN NaN NaN NaN NaN 154.19 1 148.92 148.42 149.42 -5.2669 0 0 0 0.23698 1 29896 29896 0.35063 0 1 28194 4417 18817 18824 27795 27795 0.11836224025137199 LPTAMGFH 8 Unmodified _LPTAMGFH_ 0 0 0 ENST00000564508.2_1_16:72461754-72462081:+|nuORF ENST00000564508.2_1_16:72461754-72462081:+|nuORF ENST00000564508.2_1_16:72461754-72462081:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21759033203125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 175.1 1 175.1 174.6 175.6 0 0 0 0 0.21486 1 36279 36279 2.5775 1.7838 1 28195 11343 18818 18825 27796 27796 -0.01985498208887293 LPTDSEWTV 9 Unmodified _LPTDSEWTV_ 0 0 0 ENST00000542991.1_1_12:14548176-14576859:+|nuORF ENST00000542991.1_1_12:14548176-14576859:+|nuORF ENST00000542991.1_1_12:14548176-14576859:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7006225585938 2 524.253297 1046.49204 0.72547 0.00038033 -0.55841 -0.00029275 0.16706 8.7583E-05 524.7545615105778 108.45 0.69553 104.31 104.09 104.78 -4.135 35 19 2 0 0 0 0.79204 1 20851 20851 7.2892 0 1 2505700 28196 11096 18819 18826 27797 27797 -0.02934546410256189 LPTFVWLLY 9 Unmodified _LPTFVWLLY_ 0 0 0 REV__ENSG00000167904|ENST00000434581|TMEM68 REV__ENSG00000167904|ENST00000434581|TMEM68 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3282470703125 2 576.328611 1150.64267 0.29389 0.00016938 -0.12299 -7.088E-05 0.17091 9.85E-05 576.3298108594043 132.63 0.21017 132.63 132.51 132.72 0 8 5 2 0 0 0 0.57821 1 26235 26235 14.582 2.0501 1 2401900 + 28197 17979 18820 18827 27798 27798 0.07337265039222984 LPTFVWLLY 9 Unmodified _LPTFVWLLY_ 0 0 0 REV__ENSG00000167904|ENST00000434581|TMEM68 REV__ENSG00000167904|ENST00000434581|TMEM68 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.328611 1150.64267 0.29389 0.00016938 -0.12299 -7.088E-05 0.17091 9.85E-05 576.3298108594043 132.63 0.21017 132.63 132.51 132.72 0 0 0 NaN 14.582 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2401900 + 28198 17979 18820 18827 0.07337265039222984 LPTKSVTE 8 Unmodified _LPTKSVTE_ 0 0 0 REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2 REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21484375 2 437.74765 873.480748 0.40989 0.00017943 0.38032 0.00016648 0.79021 0.00034591 437.74816242563804 106.02 0.58351 106.02 105.78 106.36 0 24 16 2 0 0 0 0.96284 1 20804 20804 13.508 0 1 1459600 + 28199 19312 18821 18828 27799 27799 0.038946762862906326 LPTKTVPIS 9 Unmodified _LPTKTVPIS_ 0 0 0 REV__ENSG00000127249|ENST00000342695|ATP13A4;REV__ENSG00000187527|ENST00000342358|ATP13A5 REV__ENSG00000127249|ENST00000342695|ATP13A4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7225036621094 2 478.294768 954.574983 0.40484 0.00019363 -3.4145 -0.0016331 -3.0096 -0.0014395 478.294444765235 124.15 0.4554 119.42 119.18 119.63 -4.731 21 12 3 0 0 0 0.71527 1 23846 23846 19.257 2.3147 1 1063200 + 28200 15881;19091 18822 18829 27800 27800 0.09587815108409359 LPTLKMQTTLV 11 Unmodified _LPTLKMQTTLV_ 0 0 0 nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-3|TOX4 nc|ENSG00000092203|O94842-2|TOX4 nc|ENSG00000092203|O94842-2|TOX4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.760009765625 2 622.867774 1243.72099 0.68957 0.00042951 0.20812 0.00012963 0.89769 0.00055914 623.3695742876315 165.31 0.17262 160.36 160.26 160.43 -4.9484 7 4 2 0 0 0 0.95896 1 32285 32285 0.62683 0 1 9284600 28201 1831 18823 18830 27801 27801 0.10888329562135368 LPTPFNYTIN 10 Unmodified _LPTPFNYTIN_ 0 0 0 nc|ENSG858|P60608|ERVFC1-1 nc|ENSG858|P60608|ERVFC1-1 nc|ENSG858|P60608|ERVFC1-1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2698974609375 2 590.305864 1178.59717 NaN NaN NaN NaN NaN NaN NaN 104.59 1 104.59 104.09 105.09 0 0 0 0 0.22583 1 20555 20555 13.906 1.6654 1 28202 12669 18824 18831 27802 27802 0.015019947861901528 LPVCPTVLYF 10 Unmodified _LPVCPTVLYF_ 0 0 0 ENST00000478626.1_1_2:85838448-85838818:-|nuORF ENST00000478626.1_1_2:85838448-85838818:-|nuORF ENST00000478626.1_1_2:85838448-85838818:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3134765625 2 576.312103 1150.60965 NaN NaN NaN NaN NaN NaN NaN 144.68 1 144.68 144.18 145.18 0 0 0 0 0.22588 1 28911 28911 7.2892 0.65886 1 28203 10324 18825 18832 27803 27803 0.040373149248580376 LPVFRWDRF 9 Unmodified _LPVFRWDRF_ 0 0 0 ENSG00000121316|ENST00000240617|PLBD1 ENSG00000121316|ENST00000240617|PLBD1 ENSG00000121316|ENST00000240617|PLBD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 412.27435302734375 3 412.560981 1234.66111 NaN NaN NaN NaN NaN NaN NaN 153.59 1 148.33 147.83 148.83 -5.2669 0 0 0 0.23508 1 29774 29774 2.9952 0.49676 1 28204 3176 18826 18833 27804 27804 0.053168197337754464 LPVNVLSEKFK 11 Unmodified _LPVNVLSEKFK_ 0 0 0 REV__MTMR3|p.S466Ifs*6|1|0.03|ENSG00000100330|chr22:30013433-30013434|-/ATTTG|frameshift_variant REV__MTMR3|p.S466Ifs*6|1|0.03|ENSG00000100330|chr22:30013433-30013434|-/ATTTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2542419433594 3 425.255334 1272.74417 NaN NaN NaN NaN NaN NaN NaN 121.47 1 116.93 116.43 117.43 -4.5476 0 0 0 0.23159 1 23946 23946 7.0371 0.84524 1 + 28205 14692 18827 18834 27805 27805 0.11871091671105205 LPVNVLSEKFK 11 Unmodified _LPVNVLSEKFK_ 0 0 0 REV__MTMR3|p.S466Ifs*6|1|0.03|ENSG00000100330|chr22:30013433-30013434|-/ATTTG|frameshift_variant REV__MTMR3|p.S466Ifs*6|1|0.03|ENSG00000100330|chr22:30013433-30013434|-/ATTTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25421142578125 3 425.255334 1272.74417 NaN NaN NaN NaN NaN NaN NaN 121.49 1 116.96 116.46 117.46 -4.5305 0 0 0 0.23159 1 23391 23391 7.0371 3.1608 1 + 28206 14692 18827 18834 27806 27806 0.11871091671105205 LPVPTALTV 9 Unmodified _LPVPTALTV_ 0 0 0 nc|ENSG00000125319|Q8N3J3-3|HROB;ENSG00000125319|ENST00000585683|HROB;nc|ENSG00000125319|Q8N3J3|HROB nc|ENSG00000125319|Q8N3J3-3|HROB nc|ENSG00000125319|Q8N3J3-3|HROB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.4007568359375 1 910.560795 909.553519 0.37449 0.000341 -0.053809 -4.8996E-05 0.32069 0.000292 910.5607267884313 159.89 0.99409 155.1 154.59 155.58 -4.7952 41 27 2 0 0 0 0.12505 1 31872 31872 53.576 2.7205 1 5153000 28207 3349 18828 18835 27807 27807 0.09512430079689693 LPVRLPPLPRS 11 Unmodified _LPVRLPPLPRS_ 0 0 0 ENST00000519540.5_1_8:130916830-130952026:-|nuORF ENST00000519540.5_1_8:130916830-130952026:-|nuORF ENST00000519540.5_1_8:130916830-130952026:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7601318359375 2 622.895515 1243.77648 NaN NaN NaN NaN NaN NaN NaN 144.98 1 144.98 144.48 145.48 0 0 0 0 0.23151 1 28972 28972 7.1017 1.3699 1 28208 10821 18829 18836 27808 27808 0.16433923864792632 LPVSTNLPPG 10 Unmodified _LPVSTNLPPG_ 0 0 0 ENST00000553480.1_1_14:45333350-45333713:-|nuORF ENST00000553480.1_1_14:45333350-45333713:-|nuORF ENST00000553480.1_1_14:45333350-45333713:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.01141357421875 3 332.190442 993.549496 -0.39069 -0.00012978 1.2699 0.00042184 0.87919 0.00029206 332.1905604107413 36.053 1.6846 36.053 35.238 36.922 0 124 47 4 0 0 0 0.91149 1 6751 6751 0.15932 0 1 12281000 28209 11206 18830 18837 27809 27809 0.05246340585995313 LPVTYKNFV 9 Unmodified _LPVTYKNFV_ 0 0 0 REV__MAP2|p.C870Y|1|0.2|ENSG00000078018|chr2:209694779-209694779|G/A|missense_variant REV__MAP2|p.C870Y|1|0.2|ENSG00000078018|chr2:209694779-209694779|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2822875976562 2 540.808042 1079.60153 0.47927 0.00025919 -4.0753 -0.002204 -3.5961 -0.0019448 541.3070931312927 155.07 0.2462 149.82 149.69 149.93 -5.2526 11 6 3 0 0 0 0.80521 1 30053 30053 10.824 1.4765 1 1187000 + 28210 14372 18831 18838 27810 27810 0.06491503999745873 LPVWAALH 8 Unmodified _LPVWAALH_ 0 0 0 REV__ENST00000491910.5_1_22:24981856-24984399:-|nuORF REV__ENST00000491910.5_1_22:24981856-24984399:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76361083984375 2 453.763438 905.512323 NaN NaN NaN NaN NaN NaN NaN 145.66 1 140.55 140.05 141.05 -5.1108 0 0 0 0.23294 1 28152 28152 0.12286 0 1 + 28211 22325 18832 18839 27811 27811 0.05578713830891502 LPYLPTFPF 9 Unmodified _LPYLPTFPF_ 0 0 0 nc|ENSG00000106410|O60393-2|NOBOX;ENSG00000106410|ENST00000467773|NOBOX nc|ENSG00000106410|O60393-2|NOBOX nc|ENSG00000106410|O60393-2|NOBOX MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.788818359375 2 547.799686 1093.58482 NaN NaN NaN NaN NaN NaN NaN 159.66 1 154.87 154.37 155.37 -4.7952 0 0 0 0.23508 1 31745 31745 9.3474 0.75416 1 28212 2384 18833 18840 27812 27812 0.04177003113795763 LPYNQSAA 8 Unmodified _LPYNQSAA_ 0 0 0 REV__ENSG00000009694|ENST00000371130|TENM1 REV__ENSG00000009694|ENST00000371130|TENM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 432.4634094238281 2 432.216517 862.418482 0.1402 6.0596E-05 -0.054944 -2.3748E-05 0.085254 3.6848E-05 432.216422848975 33.559 0.87347 33.559 33.165 34.039 0 62 24 4 0 0 0 0.83238 1 6084 6084 18.373 0 1 12258000 + 28213 13910 18834 18841 27813 27813 -0.018230500620575185 LQADKEDP 8 Unmodified _LQADKEDP_ 0 0 0 RPE65|p.N356Kfs*9|1|0.35|ENSG00000116745|chr1:68438247-68438248|-/T|frameshift_variant;ENSG00000116745|ENST00000262340|RPE65 RPE65|p.N356Kfs*9|1|0.35|ENSG00000116745|chr1:68438247-68438248|-/T|frameshift_variant RPE65|p.N356Kfs*9|1|0.35|ENSG00000116745|chr1:68438247-68438248|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2250671386719 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 48.306 1 48.306 47.806 48.806 0 0 0 0 0.20618 1 9120 9120 20.454 0 1 28214 2949 18835 18842 27814 27814 -0.026113886158100286 LQAIYVIDF 9 Unmodified _LQAIYVIDF_ 0 0 0 ENSG00000172893|ENST00000355527|DHCR7 ENSG00000172893|ENST00000355527|DHCR7 ENSG00000172893|ENST00000355527|DHCR7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2794799804688 2 541.30005 1080.58555 0.19496 0.00010553 3.1218 0.0016898 3.3168 0.0017954 541.3018283706227 92.844 0.205 88.919 88.759 88.964 -3.9251 8 5 2 0 0 0 0.79204 1 18162 18162 16.942 9.0321 1 1031900 28215 6249 18836 18843 27815 27815 0.04847797762840855 LQAKINDA 8 Unmodified _LQAKINDA_ 0 0 0 REV__ENSG00000169228|ENST00000303251|RAB24 REV__ENSG00000169228|ENST00000303251|RAB24 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2189025878906 2 436.745442 871.476331 NaN NaN NaN NaN NaN NaN NaN 130.98 1 130.98 130.48 131.48 0 0 0 0 0.23312 1 25895 25895 6.2058 2.9245 1 + 28216 18089 18837 18844 27816 27816 0.03545211863365694 LQCRLRKAEQK 11 Unmodified _LQCRLRKAEQK_ 0 0 0 MTCL1|p.Y395C|1|0.06|ENSG00000168502|chr18:8718554-8718554|A/G|missense_variant MTCL1|p.Y395C|1|0.06|ENSG00000168502|chr18:8718554-8718554|A/G|missense_variant MTCL1|p.Y395C|1|0.06|ENSG00000168502|chr18:8718554-8718554|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2279052734375 3 458.266239 1371.77689 NaN NaN NaN NaN NaN NaN NaN 108.14 1 104.01 103.51 104.51 -4.135 0 0 0 0.22632 1 20806 20806 0.0059557 0 1 28217 12166 18838 18845 27817 27817 0.10586975522323883 LQDAEIAR 8 Unmodified _LQDAEIAR_ 0 0 0 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2333068847656 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 32.537 1 30.307 29.807 30.807 -2.2305 0 0 0 0.059954 1 5932 5932 51.63 13.656 1 28218 7415 18839 18846 27818 27818 0.021483103750369992 LQDAGLLAD 9 Unmodified _LQDAGLLAD_ 0 0 0 ENST00000320442.8_1_12:58014065-58016599:+|nuORF;ENST00000474359.6_1_12:58013521-58016599:+|nuORF ENST00000320442.8_1_12:58014065-58016599:+|nuORF ENST00000320442.8_1_12:58014065-58016599:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22900390625 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 104.06 1 99.841 99.341 100.34 -4.2183 0 0 0 0.1756 1 20465 20465 1.6919 0.23681 1 28219 8710 18840 18847 27819 27819 0.010254882809022092 LQDAGLLAD 9 Unmodified _LQDAGLLAD_ 0 0 0 ENST00000320442.8_1_12:58014065-58016599:+|nuORF;ENST00000474359.6_1_12:58013521-58016599:+|nuORF ENST00000320442.8_1_12:58014065-58016599:+|nuORF ENST00000320442.8_1_12:58014065-58016599:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2337341308594 2 458.242732 914.470912 0.070743 3.2418E-05 -0.04549 -2.0846E-05 0.025253 1.1572E-05 458.2426683325484 93.02 1.3757 89.176 88.65 90.026 -3.844 115 39 4 0 0 0 0.11717 1 17927 17927 49.933 3.912 1 105910000 28220 8710 18840 18847 27820 27820 0.010254882809022092 LQDLDKEPH 9 Unmodified _LQDLDKEPH_ 0 0 0 REV__nc|ENSG00000100678|P57103-3|SLC8A3 REV__nc|ENSG00000100678|P57103-3|SLC8A3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7723388671875 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 83.988 1 80.078 79.578 80.578 -3.9093 0 0 0 0.23108 1 15961 15961 14.405 0.8975 1 + 28221 14734 18841 18848 27821 27821 -0.0026405277030789875 LQDLSFSCKY 10 Unmodified _LQDLSFSCKY_ 0 0 0 ENSG00000011201|ENST00000262648|ANOS1 ENSG00000011201|ENST00000262648|ANOS1 ENSG00000011201|ENST00000262648|ANOS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2897338867188 2 602.289356 1202.56416 NaN NaN NaN NaN NaN NaN NaN 74.919 1 71.221 70.721 71.721 -3.6978 0 0 0 0.22576 1 14166 14166 14.838 0.43289 1 28222 1071 18842 18849 27822 27822 -0.029019553281614208 LQDNAENVY 9 Unmodified _LQDNAENVY_ 0 0 0 GP1BA|p.S420Afs*52|1|0.4|ENSG00000185245|chr17:4933857-4933857|C/-|frameshift_variant;GP1BA|p.T494Pfs*59|1|0.4|ENSG00000185245|chr17:4934078-4934078|A/-|frameshift_variant;GP1BA|p.L531Wfs*22|1|0.36|ENSG00000185245|chr17:4934191-4934191|C/-|frameshift_variant;ENSG00000185245|ENST00000329125|GP1BA GP1BA|p.S420Afs*52|1|0.4|ENSG00000185245|chr17:4933857-4933857|C/-|frameshift_variant GP1BA|p.S420Afs*52|1|0.4|ENSG00000185245|chr17:4933857-4933857|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2691040039062 2 533.246003 1064.47745 NaN NaN NaN NaN NaN NaN NaN 78.17 1 78.17 77.67 78.67 0 0 0 0 0.1761 1 15210 15210 26.884 0 1 28223 11857 18843 18850 27823 27823 -0.05220618558360002 LQDTRQEPMVR 11 Unmodified _LQDTRQEPMVR_ 0 0 0 ENSG00000129932|ENST00000427575|DOHH ENSG00000129932|ENST00000427575|DOHH ENSG00000129932|ENST00000427575|DOHH MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2239990234375 3 458.238237 1371.69288 NaN NaN NaN NaN NaN NaN NaN 104.1 1 100.05 99.547 100.55 -4.0543 0 0 0 0.22632 1 20018 20018 0.0059557 0 1 28224 3573 18844 18851 27824 27824 0.02190399634764617 LQEALEPD 8 Unmodified _LQEALEPD_ 0 0 0 PPP6R2|p.K449Sfs*24|1|0.17|ENSG00000100239|chr22:50432274-50432274|A/-|frameshift_variant;PPP6R2|p.P703Lfs*29|2|0.3|ENSG00000100239|chr22:50438737-50438737|G/-|frameshift_variant;PPP6R2|p.H660Mfs*72|2|0.43|ENSG00000100239|chr22:50438607-50438607|C/-|frameshift_variant;PPP6R2|p.P854Rfs*23|1|0.41|ENSG00000100239|chr22:50440981-50440981|C/-|frameshift_variant;PPP6R2|p.E897Rfs*10|1|0.37|ENSG00000100239|chr22:50443948-50443948|C/-|frameshift_variant;nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2 PPP6R2|p.K449Sfs*24|1|0.17|ENSG00000100239|chr22:50432274-50432274|A/-|frameshift_variant PPP6R2|p.K449Sfs*24|1|0.17|ENSG00000100239|chr22:50432274-50432274|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2385559082031 2 457.726915 913.439277 0.49089 0.00022469 -3.388 -0.0015508 -2.8971 -0.0013261 457.7266557243063 76.169 0.31522 76.169 76.063 76.378 0 10 8 2 0 0 0 0.26367 1 14787 14787 36.044 12.896 1 485940 28225 1941 18845 18852 27825 27825 -0.02090504473051169 LQEEKAFRE 9 Unmodified _LQEEKAFRE_ 0 0 0 ENSG00000123171|ENST00000242819|CCDC70 ENSG00000123171|ENST00000242819|CCDC70 ENSG00000123171|ENST00000242819|CCDC70 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3356323242188 2 575.29857 1148.58259 -0.0084499 -4.8612E-06 0.15715 9.041E-05 0.1487 8.5549E-05 575.2986779616912 58.634 0.96843 58.634 58.105 59.074 0 86 27 5 0 0 0 0.42844 1 11233 11233 24.021 1.2843 1 136770000 28226 3255 18846 18853 27826 27826 0.014239226380595937 LQEFARRFL 9 Unmodified _LQEFARRFL_ 0 0 0 ENST00000573266.5_1_19:52204948-52207434:+|nuORF;ENST00000576093.5_1_19:52197750-52207734:+|nuORF;ENSG00000182310|ENST00000637797|SPACA6 ENST00000573266.5_1_19:52204948-52207434:+|nuORF ENST00000573266.5_1_19:52204948-52207434:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.268798828125 2 590.33529 1178.65603 NaN NaN NaN NaN NaN NaN NaN 147.54 1 142.83 142.33 143.33 -4.7095 0 0 0 0.23508 1 29277 29277 10.074 0.6908 1 28227 6782 18847 18854 27827 27827 0.0738451587117197 LQEHDIETPY 10 Unmodified _LQEHDIETPY_ 0 0 0 nc|ENSG00000103034|Q9ULP0-8|NDRG4 nc|ENSG00000103034|Q9ULP0-8|NDRG4 nc|ENSG00000103034|Q9ULP0-8|NDRG4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7593383789062 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 95.16 1 95.16 94.66 95.66 0 0 0 0 2.8426 1 18641 18641 1.914 1.3975 1 28228 12263 18848 18855 27828 27828 -0.03996104807015399 LQEKFKQQKYE 11 Unmodified _LQEKFKQQKYE_ 0 0 0 ENST00000460780.5_1_1:201330340-201331096:-|nuORF;nc|ENSG00000118194|P45379-12|TNNT2;nc|ENSG00000118194|P45379-9|TNNT2;nc|ENSG00000118194|P45379-7|TNNT2;nc|ENSG00000118194|P45379-11|TNNT2;nc|ENSG00000118194|P45379-6|TNNT2;nc|ENSG00000118194|P45379-8|TNNT2;nc|ENSG00000118194|P45379-10|TNNT2;nc|ENSG00000118194|P45379-4|TNNT2;nc|ENSG00000118194|P45379-5|TNNT2;nc|ENSG00000118194|P45379-3|TNNT2;nc|ENSG00000118194|P45379-2|TNNT2;ENSG00000118194|ENST00000656932|TNNT2 ENST00000460780.5_1_1:201330340-201331096:-|nuORF ENST00000460780.5_1_1:201330340-201331096:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2581481933594 3 490.264669 1467.77218 NaN NaN NaN NaN NaN NaN NaN 45.299 1 42.433 41.933 42.933 -2.8653 0 0 0 0.22632 1 8220 8220 3.0723 1.6171 1 28229 3020 18849 18856 27829 27829 0.05700369860574028 LQEKTTEPKDA 11 Unmodified _LQEKTTEPKDA_ 0 0 0 REV__ENSG00000229314|ENST00000259396|ORM1 REV__ENSG00000229314|ENST00000259396|ORM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7780151367188 2 630.327524 1258.6405 NaN NaN NaN NaN NaN NaN NaN 29.709 1 29.709 29.209 30.209 0 0 0 0 0.23087 1 5319 5319 7.609 0.88579 1 + 28230 19734 18850 18857 27830 27830 0.021521397728065494 LQERTFYWRKN 11 Unmodified _LQERTFYWRKN_ 0 0 0 REV__nc|ENSG00000129315|O60563-2|CCNT1 REV__nc|ENSG00000129315|O60563-2|CCNT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 514.2406005859375 3 514.272158 1539.79465 NaN NaN NaN NaN NaN NaN NaN 144.66 1 139.6 139.1 140.1 -5.0671 0 0 0 0.22632 1 27921 27921 0.11104 0 1 + 28231 15957 18851 18858 27831 27831 0.04634014048815516 LQERTRRQ 8 Unmodified _LQERTRRQ_ 0 0 0 REV__nc|ENSG00000186260|Q9ULH7-2|MRTFB REV__nc|ENSG00000186260|Q9ULH7-2|MRTFB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77685546875 2 543.809971 1085.60539 0.68491 0.00037246 1.9077 0.0010374 2.5926 0.0014099 543.8108432582675 111.8 0.35473 107.57 107.39 107.74 -4.2289 11 9 2 0 0 0 0.93477 1 21492 21492 18.135 0 1 695430 + 28232 19023 18852 18859 27832 27832 0.06600986546163767 LQETQHQY 8 Unmodified _LQETQHQY_ 0 0 0 REV__ENST00000231061.8_1_5:151041666-151041795:-|nuORF REV__ENST00000231061.8_1_5:151041666-151041795:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6864013671875 2 523.748713 1045.48287 NaN NaN NaN NaN NaN NaN NaN 37.301 1 37.301 36.801 37.801 0 0 0 0 0.20761 1 6894 6894 19.257 1.1106 1 + 28233 20068 18853 18860 27833 27833 -0.03804894975883144 LQETQHQY 8 Unmodified _LQETQHQY_ 0 0 0 REV__ENST00000231061.8_1_5:151041666-151041795:-|nuORF REV__ENST00000231061.8_1_5:151041666-151041795:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6966552734375 2 523.748713 1045.48287 NaN NaN NaN NaN NaN NaN NaN 37.336 1 37.336 36.836 37.836 0 0 0 0 0.18734 1 6901 6901 29.082 3.6823 1 + 28234 20068 18853 18860 27834 27834 -0.03804894975883144 LQFHLLRRNR 10 Unmodified _LQFHLLRRNR_ 0 0 0 ENSG00000154734|ENST00000284984|ADAMTS1 ENSG00000154734|ENST00000284984|ADAMTS1 ENSG00000154734|ENST00000284984|ADAMTS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 676.9099731445312 2 676.904737 1351.79492 NaN NaN NaN NaN NaN NaN NaN 178.63 1 173.84 173.34 174.34 -4.7898 0 0 0 2.8426 1 36546 36546 0.0013812 0 1 28235 5023 18854 18861 27835 27835 0.13309478559358467 LQFKRWFWSIV 11 Unmodified _LQFKRWFWSIV_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 503.5594787597656 3 503.950357 1508.82924 0.21379 0.00010774 -1.4479 -0.00072968 -1.2341 -0.00062195 504.283994346308 147.35 0.23524 142.35 142.24 142.48 -5 8 6 2 0 0 0 0.89092 1 28502 28502 0.172 0.17144 1 1504800 28236 2240 18855 18862 27836 27836 0.09517881927604321 LQFPPLRIYF 10 Unmodified _LQFPPLRIYF_ 0 0 0 ENST00000536017.1_1_11:64053906-64055433:+|nuORF ENST00000536017.1_1_11:64053906-64055433:+|nuORF ENST00000536017.1_1_11:64053906-64055433:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 647.2101440429688 2 647.371341 1292.72813 1.1222 0.00072649 -2.7368 -0.0017717 -1.6146 -0.0010452 647.8702981961983 166.31 0.20926 161.52 161.45 161.66 -4.7898 8 5 2 0 0 0 1.1231 1 33397 33397 0.51642 0.50315 1 63510000 28237 11023 18856 18863 27837 27837 0.09347430224875097 LQFRVFNKINY 11 Unmodified _LQFRVFNKINY_ 0 0 0 REV__nc|ENSG00000064270|O75185-2|ATP2C2 REV__nc|ENSG00000064270|O75185-2|ATP2C2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2424011230469 3 481.269866 1440.78777 NaN NaN NaN NaN NaN NaN NaN 31.241 1 31.241 30.741 31.741 0 0 0 0 0.22632 1 5636 5636 0.03141 0 1 + 28238 23943 18857 18864 27838 27838 0.08500701168304658 LQFRVFNKINY 11 Unmodified _LQFRVFNKINY_ 0 0 0 REV__nc|ENSG00000064270|O75185-2|ATP2C2 REV__nc|ENSG00000064270|O75185-2|ATP2C2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2486267089844 3 481.269866 1440.78777 NaN NaN NaN NaN NaN NaN NaN 33.503 1 31.288 30.788 31.788 -2.2158 0 0 0 0.22632 1 5840 5840 0.172 0 1 + 28239 23943 18857 18864 27839 27839 0.08500701168304658 LQHEGIFRV 9 Unmodified _LQHEGIFRV_ 0 0 0 SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant;ENST00000494397.5_1_X:153175958-153178171:-|nuORF;ENST00000470209.5_1_X:153173185-153178999:-|nuORF;ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4 SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENST00000470209.5_1_X:153173185-153178999:-|nuORF SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 367.12884521484375 3 366.873336 1097.59818 -0.099406 -3.6469E-05 -0.075915 -2.7851E-05 -0.17532 -6.432E-05 366.8732718118632 84.25 0.59334 84.25 83.927 84.52 0 36 16 3 0 0 0 0.1428 1 16467 16467 36.127 27.971 1 2529500 28240 7981;1770 18858 18865 27840 27840 0.053282539457541134 LQHEGIFRV 9 Unmodified _LQHEGIFRV_ 0 0 0 SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant;ENST00000494397.5_1_X:153175958-153178171:-|nuORF;ENST00000470209.5_1_X:153173185-153178999:-|nuORF;ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4 SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENST00000470209.5_1_X:153173185-153178999:-|nuORF SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 366.873336 1097.59818 -0.32186 -0.00011808 0.20578 7.5494E-05 -0.11608 -4.2587E-05 366.8733432899934 87.652 0.72031 83.859 83.474 84.195 -3.7926 -0.080116 0.000217 NaN 36.127 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 4333800 28241 7981;1770 18858 18865 0.053282539457541134 LQHEGIFRV 9 Unmodified _LQHEGIFRV_ 0 0 0 SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant;ENST00000494397.5_1_X:153175958-153178171:-|nuORF;ENST00000470209.5_1_X:153173185-153178999:-|nuORF;ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4 SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENST00000470209.5_1_X:153173185-153178999:-|nuORF SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 366.873336 1097.59818 0.33814 0.00012405 -0.5508 -0.00020207 -0.21266 -7.8019E-05 366.8731107340353 87.812 0.74078 83.817 83.515 84.256 -3.9953 -0.12251 -0.00061571 NaN 36.127 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3426500 28242 7981;1770 18858 18865 0.053282539457541134 LQHEGIFRV 9 Unmodified _LQHEGIFRV_ 0 0 0 SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant;ENST00000494397.5_1_X:153175958-153178171:-|nuORF;ENST00000470209.5_1_X:153173185-153178999:-|nuORF;ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4 SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENST00000470209.5_1_X:153173185-153178999:-|nuORF SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 366.873336 1097.59818 -0.53351 -0.00019573 0.56553 0.00020748 0.032017 1.1746E-05 366.87343589659986 87.582 1.0523 83.832 83.521 84.573 -3.7501 -0.10797 0.00061295 NaN 36.127 59 29 3 NaN NaN NaN NaN 0 NaN NaN 0 3875500 28243 7981;1770 18858 18865 0.053282539457541134 LQHLKEQID 9 Unmodified _LQHLKEQID_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2 REV__ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.208251953125 3 375.208384 1122.60332 -0.018476 -6.9322E-06 0.028857 1.0827E-05 0.010381 3.895E-06 375.208307424031 45.48 0.38604 42.614 42.307 42.693 -2.8653 14 10 2 0 0 0 0.5326 1 8260 8260 0.0033805 0 1 854500 + 28244 14106 18859 18866 27841 27841 0.04692513017721467 LQHLWRLL 8 Unmodified _LQHLWRLL_ 0 0 0 MAN2C1|p.V752Cfs*60|1|0.43|ENSG00000140400|chr15:75358611-75358611|C/-|frameshift_variant;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000565953.5_1_15:75651952-75652447:-|nuORF MAN2C1|p.V752Cfs*60|1|0.43|ENSG00000140400|chr15:75358611-75358611|C/-|frameshift_variant MAN2C1|p.V752Cfs*60|1|0.43|ENSG00000140400|chr15:75358611-75358611|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2105407714844 3 360.222188 1077.64473 NaN NaN NaN NaN NaN NaN NaN 35.222 1 32.828 32.328 33.328 -2.3938 0 0 0 0.2325 1 6484 6484 0.62683 0.62345 1 28245 12107 18860 18867 27842 27842 0.109017385676907 LQHMELFK 8 Unmodified _LQHMELFK_ 0 0 0 REV__nc|ENSG00000135069|Q9Y617-2|PSAT1 REV__nc|ENSG00000135069|Q9Y617-2|PSAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.689208984375 2 523.278595 1044.54264 -0.2279 -0.00011925 1.5177 0.00079419 1.2898 0.00067493 523.2795620194197 44.505 0.66956 41.715 41.425 42.095 -2.79 30 18 2 0 0 0 0.68128 1 8304 8304 16.942 0 1 1194300 + 28246 16244 18861 18868 27843 27843 0.02214704433777115 LQIKDGWII 9 Unmodified _LQIKDGWII_ 0 0 0 ENST00000272748.8_1_2:176857913-176867018:-|nuORF ENST00000272748.8_1_2:176857913-176867018:-|nuORF ENST00000272748.8_1_2:176857913-176867018:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7919921875 2 543.321317 1084.62808 0.090489 4.9164E-05 -0.39596 -0.00021513 -0.30547 -0.00016597 543.8229502957428 138.84 0.77779 133.89 133.46 134.24 -4.952 65 21 4 0 0 0 0.58699 1 26633 26633 19.257 0 1 8325800 28247 8411 18862 18869 27844 27844 0.08915192891095103 LQKAIRASR 9 Unmodified _LQKAIRASR_ 0 0 0 REV__RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant REV__RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2637329101562 2 521.827632 1041.64071 -0.61735 -0.00032215 -4.1283 -0.0021543 -4.7457 -0.0024764 521.8265669327501 145.5 0.1678 140.43 140.36 140.52 -5.0671 6 4 2 0 0 0 0.77644 1 28134 28134 20.415 11.669 1 1402700 + 28248 16536 18863 18870 27845 27845 0.12155649073974928 LQKANLLY 8 Unmodified _LQKANLLY_ 0 0 0 NAB1|p.S25Y|1|0.26|ENSG00000138386|chr2:190659250-190659250|C/A|missense_variant NAB1|p.S25Y|1|0.26|ENSG00000138386|chr2:190659250-190659250|C/A|missense_variant NAB1|p.S25Y|1|0.26|ENSG00000138386|chr2:190659250-190659250|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7864685058594 2 481.78711 961.559667 0.29556 0.0001424 -0.23061 -0.00011111 0.064951 3.1293E-05 481.78685636959557 105.02 0.20836 105.02 104.93 105.14 0 6 5 2 0 0 0 0.58432 1 20649 20649 23.148 1.4018 1 643490 28249 12196 18864 18871 27846 27846 0.07734948311212975 LQKDGWRY 8 Unmodified _LQKDGWRY_ 0 0 0 ENSG00000151229|ENST00000280871|SLC2A13;SLC2A13|p.T491Qfs*41|1|0.08|ENSG00000151229|chr12:39764833-39764833|T/-|frameshift_variant ENSG00000151229|ENST00000280871|SLC2A13 ENSG00000151229|ENST00000280871|SLC2A13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2838745117188 2 533.277441 1064.54033 NaN NaN NaN NaN NaN NaN NaN 81.516 1 77.959 77.459 78.459 -3.557 0 0 0 0.20294 1 15921 15921 23.148 1.4018 1 28250 4853 18865 18872 27847 27847 0.01063992020317528 LQKFLDVAFA 10 Unmodified _LQKFLDVAFA_ 0 0 0 REV__nc|ENSG00000206075|P36952-2|SERPINB5 REV__nc|ENSG00000206075|P36952-2|SERPINB5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3206176757812 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 121.21 1 116.67 116.17 117.17 -4.5476 0 0 0 2.8426 1 23894 23894 0.26539 0 1 + 28251 19612 18866 18873 27848 27848 0.06935175545504535 LQKGPPCP 8 Unmodified _LQKGPPCP_ 0 0 0 REV__ENST00000588777.1_1_19:12986806-12989487:-|nuORF REV__ENST00000588777.1_1_19:12986806-12989487:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4853515625 1 839.444385 838.437109 0.42738 0.00035877 0.9676 0.00081225 1.395 0.001171 839.4457096411847 165.74 0.20798 160.76 160.7 160.91 -4.9811 6 5 2 0 0 0 8448 1 32420 32420 0.063987 0 1 24156000 + 28252 23301 18867 18874 27849 27849 0.01142788308152376 LQKKEQGKQAV 11 Unmodified _LQKKEQGKQAV_ 0 0 0 nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5 nc|ENSG00000170190|O15375-2|SLC16A5 nc|ENSG00000170190|O15375-2|SLC16A5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 628.7379150390625 2 628.869694 1255.72483 NaN NaN NaN NaN NaN NaN NaN 167.82 1 162.87 162.37 163.37 -4.948 0 0 0 0.22632 1 33047 33047 8.4443 0 1 28253 6048 18868 18875 27850 27850 0.10720135380211104 LQKLDIEW 8 Unmodified _LQKLDIEW_ 0 0 0 REV__ENSG00000198650|ENST00000355962|TAT REV__ENSG00000198650|ENST00000355962|TAT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2681884765625 2 522.78985 1043.56515 -0.40932 -0.00021399 -1.0064 -0.00052615 -1.4157 -0.00074014 522.7893635960072 104.64 0.41012 100.42 100.1 100.51 -4.2183 15 11 2 0 0 0 0.97173 1 20546 20546 12.532 0.89125 1 918110 + 28254 19430 18869 18876 27851 27851 0.04510627103013576 LQKLHEDLK 9 Unmodified _LQKLHEDLK_ 0 0 0 ENST00000430458.1_1_6:108616211-108666050:+|nuORF;ENSG00000135537|ENST00000368977|AFG1L ENST00000430458.1_1_6:108616211-108666050:+|nuORF ENST00000430458.1_1_6:108616211-108666050:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.22003173828125 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 177.5 1 177.5 177 178 0 0 0 0 0.23508 1 36769 36769 0.26902 0 1 28255 3933 18870 18877 27852 27852 0.0832938991438823 LQKRPRRLL 9 Unmodified _LQKRPRRLL_ 0 0 0 ENST00000444939.1_1_3:196045288-196050736:+|nuORF ENST00000444939.1_1_3:196045288-196050736:+|nuORF ENST00000444939.1_1_3:196045288-196050736:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2603149414062 2 590.393474 1178.77239 NaN NaN NaN NaN NaN NaN NaN 173.64 1 168.74 168.24 169.24 -4.8977 0 0 0 0.19622 1 34484 34484 0.96228 0 1 28256 9925 18871 18878 27853 27853 0.19015879161747762 LQLCYRHKRR 10 Unmodified _LQLCYRHKRR_ 0 0 0 ENST00000510885.2_1_4:57459440-57459704:+|nuORF ENST00000510885.2_1_4:57459440-57459704:+|nuORF ENST00000510885.2_1_4:57459440-57459704:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2305908203125 3 458.26294 1371.76699 NaN NaN NaN NaN NaN NaN NaN 154.39 1 149.11 148.61 149.61 -5.2854 0 0 0 2.8426 1 29936 29936 0.043787 0 1 28257 10746 18872 18879 27854 27854 0.09597832307599674 LQLDRLQEY 9 Unmodified _LQLDRLQEY_ 0 0 0 REV__PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant REV__PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2669067382812 2 589.31422 1176.61389 0.62588 0.00036884 -0.2232 -0.00013153 0.40268 0.00023731 589.3137605472125 110.96 0.5274 106.73 106.48 107.01 -4.2289 19 14 2 0 0 0 0.60061 1 21333 21333 13.042 0 1 1216000 + 28258 19839 18873 18880 27855 27855 0.032644956721242124 LQLDRLQEY 9 Unmodified _LQLDRLQEY_ 0 0 0 REV__PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant REV__PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 589.31422 1176.61389 0.55403 0.0003265 -1.1401 -0.00067187 -0.58606 -0.00034538 589.3131696636829 106.76 0.43079 106.76 106.5 106.93 0 -0.029147 -0.00049198 NaN 13.042 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1801800 + 28259 19839 18873 18880 0.032644956721242124 LQLDRLQEY 9 Unmodified _LQLDRLQEY_ 0 0 0 REV__PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant REV__PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.31422 1176.61389 0.29458 0.0001736 -0.86276 -0.00050844 -0.56818 -0.00033484 589.3135037817666 111.36 0.52589 106.87 106.57 107.1 -4.4915 0.083307 -0.00016511 NaN 13.042 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1776000 + 28260 19839 18873 18880 0.032644956721242124 LQLDRLQEY 9 Unmodified _LQLDRLQEY_ 0 0 0 REV__PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant REV__PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 589.31422 1176.61389 0.62588 0.00036884 -0.2232 -0.00013153 0.40268 0.00023731 589.3137605472125 110.96 0.5274 106.73 106.48 107.01 -4.2289 -0.05416 0.0005887 NaN 13.042 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1216000 + 28261 19839 18873 18880 0.032644956721242124 LQLFYWRLFRK 11 Unmodified _LQLFYWRLFRK_ 0 0 0 ENST00000502508.5_1_5:33441192-33446243:+|nuORF ENST00000502508.5_1_5:33441192-33446243:+|nuORF ENST00000502508.5_1_5:33441192-33446243:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3924560546875 2 785.456271 1568.89799 NaN NaN NaN NaN NaN NaN NaN 97.926 1 97.926 97.426 98.426 0 0 0 0 0.2367 1 19193 19193 2.9952 1.6657 1 28262 10628 18874 18881 27856 27856 0.13629546227275569 LQLKLGPALK 10 Unmodified _LQLKLGPALK_ 0 0 0 ENST00000505585.5_2_1:84810953-84815454:+|nuORF;nc|ENSG00000203943|Q5VXD3-3|SAMD13;ENST00000506295.1_2_1:84810518-84815454:+|nuORF;ENSG00000203943|ENST00000394834|SAMD13;nc|ENSG00000203943|Q5VXD3-2|SAMD13;nc|ENSG00000203943|Q5VXD3|SAMD13 ENST00000505585.5_2_1:84810953-84815454:+|nuORF ENST00000505585.5_2_1:84810953-84815454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.295166015625 2 540.860609 1079.70667 NaN NaN NaN NaN NaN NaN NaN 173.65 1 168.86 168.36 169.36 -4.7898 0 0 0 2.8426 1 35437 35437 3.8763 0 1 28263 7550 18875 18882 27857 27857 0.17000045196164137 LQLLKKLLYRR 11 Unmodified _LQLLKKLLYRR_ 0 0 0 REV__ENSG00000154144|ENST00000441174|TBRG1 REV__ENSG00000154144|ENST00000441174|TBRG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78753662109375 3 481.988923 1442.94494 NaN NaN NaN NaN NaN NaN NaN 165.89 1 160.94 160.44 161.44 -4.9484 0 0 0 0.23698 1 32451 32451 1.1098 0.65524 1 + 28264 17170 18876 18883 27858 27858 0.24118405778426677 LQLLLKIQP 9 Unmodified _LQLLLKIQP_ 0 0 0 ENST00000581104.5_1_17:73208151-73231006:+|nuORF ENST00000581104.5_1_17:73208151-73231006:+|nuORF ENST00000581104.5_1_17:73208151-73231006:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2861938476562 2 533.35516 1064.69577 NaN NaN NaN NaN NaN NaN NaN 151.85 1 147.1 146.6 147.6 -4.7523 0 0 0 0.23508 1 30175 30175 4.3292 0 1 28265 11501 18877 18884 27859 27859 0.16600642821890688 LQLLRRHLKK 10 Unmodified _LQLLRRHLKK_ 0 0 0 REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1 REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 653.581298828125 2 652.935506 1303.85646 0.42343 0.00027647 1.9004 0.0012409 2.3239 0.0015173 652.93598142608 169.99 0.10046 169.99 169.9 170 0 4 2 2 0 0 0 0.75676 1 34927 34927 3.5965 0.31518 1 5856500 + 28266 19154 18878 18885 27860 27860 0.2166841025859867 LQLRRRRRRRR 11 Unmodified _LQLRRRRRRRR_ 0 0 0 ENST00000397992.5_1_16:72984846-73092758:-|nuORF ENST00000397992.5_1_16:72984846-73092758:-|nuORF ENST00000397992.5_1_16:72984846-73092758:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3734741210938 2 811.530356 1621.04616 NaN NaN NaN NaN NaN NaN NaN 166.68 1 161.7 161.2 162.2 -4.9713 0 0 0 0.23698 1 32701 32701 0.26902 0.26902 1 28267 9477 18879 18886 27861 27861 0.2604771504434211 LQLRYRHYRVQ 11 Unmodified _LQLRYRHYRVQ_ 0 0 0 REV__ENSG00000185818|ENST00000423729|NAT8L REV__ENSG00000185818|ENST00000423729|NAT8L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 511.2922668457031 3 511.291664 1530.85316 NaN NaN NaN NaN NaN NaN NaN 162.65 1 162.65 162.15 163.15 0 0 0 0 0.22632 1 32718 32718 0.50596 0 1 + 28268 18988 18880 18887 27862 27862 0.10897115413945357 LQLSLADFR 9 Unmodified _LQLSLADFR_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000466614.1_1_22:30983271-30987820:-|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2688598632812 2 531.800749 1061.58694 0.3925 0.00020873 -0.40051 -0.00021299 -0.0080136 -4.2616E-06 531.8006004238371 105.83 2.2189 101.45 100.88 103.09 -4.3764 156 63 4 0 0 0 0.13932 1 20267 20267 45.7 0 1 296610000 28269 1922 18881 18888 27863 27863 0.058614318515992636 LQLSLADFR 9 Unmodified _LQLSLADFR_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000466614.1_1_22:30983271-30987820:-|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2642211914062 2 531.800749 1061.58694 0.79372 0.0004221 -0.88046 -0.00046823 -0.086739 -4.6128E-05 531.8003346391896 105.58 1.9822 101.49 100.94 102.92 -4.0913 161 56 4 0 0 0 0.13932 1 20255 20255 45.7 0 1 320440000 28270 1922 18881 18888 27864 27864 0.058614318515992636 LQLSLADFR 9 Unmodified _LQLSLADFR_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000466614.1_1_22:30983271-30987820:-|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 531.800749 1061.58694 0.53029 0.00028201 -0.44502 -0.00023666 0.085272 4.5347E-05 531.800547308719 101.57 1.8843 101.57 101.08 102.97 0 0.068797 -6.3927E-05 NaN 45.7 139 53 4 NaN NaN NaN NaN 0 NaN NaN 0 301530000 28271 1922 18881 18888 0.058614318515992636 LQLTVSTPII 10 Unmodified _LQLTVSTPII_ 0 0 0 nc|ENSG00000197658|Q8N4F4-1|SLC22A24;SLC22A24|p.H495Pfs*31|1|0.32|ENSG00000197658|chr11:63081034-63081035|-/G|frameshift_variant;nc|ENSG00000197658|Q8N4F4-3|SLC22A24;ENSG00000197658|ENST00000612278|SLC22A24 nc|ENSG00000197658|Q8N4F4-1|SLC22A24 nc|ENSG00000197658|Q8N4F4-1|SLC22A24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7872924804688 2 542.834257 1083.65396 0.34306 0.00018623 0.0091413 4.9622E-06 0.3522 0.00019119 542.8342146938395 155.69 0.75853 155.69 155.35 156.11 0 54 21 3 0 0 0 0.74994 1 31152 31152 5.7319 0.43497 1 25735000 28272 7389 18882 18889 27865 27865 0.1154804234272433 LQLVVVILPGK 11 Unmodified _LQLVVVILPGK_ 0 0 0 AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant;nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2 AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2584838867188 2 589.897192 1177.77983 NaN NaN NaN NaN NaN NaN NaN 69.515 1 66.335 65.835 66.835 -3.1796 0 0 0 0.22632 1 13515 13515 0.094841 0 1 28273 98 18883 18890 27866 27866 0.19805173918780383 LQLWQERERRR 11 Unmodified _LQLWQERERRR_ 0 0 0 LRCH4|p.Q418R|1|0.4|ENSG00000077454|chr7:100577315-100577315|T/C|missense_variant LRCH4|p.Q418R|1|0.4|ENSG00000077454|chr7:100577315-100577315|T/C|missense_variant LRCH4|p.Q418R|1|0.4|ENSG00000077454|chr7:100577315-100577315|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.398681640625 2 785.439672 1568.86479 NaN NaN NaN NaN NaN NaN NaN 169.72 1 169.72 169.22 170.22 0 0 0 0 0.22632 1 34846 34846 0 0 1 28274 12083 18884 18891 27867 27867 0.10311312437261222 LQMLVIVL 8 Unmodified _LQMLVIVL_ 0 0 0 GJD4|p.R33Q|1|0.22|ENSG00000177291|chr10:35607611-35607611|G/A|missense_variant GJD4|p.R33Q|1|0.22|ENSG00000177291|chr10:35607611-35607611|G/A|missense_variant GJD4|p.R33Q|1|0.22|ENSG00000177291|chr10:35607611-35607611|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1698303222656 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 7.4684 1 6.4238 5.9238 6.9238 -1.0446 0 0 0 0.2396 1 638 638 0.12286 0 1 28275 11851 18885 18892 27868 27868 0.11602251104329753 LQMWKERLQNV 11 Unmodified _LQMWKERLQNV_ 0 0 0 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 482.2470703125 3 482.262494 1443.76565 NaN NaN NaN NaN NaN NaN NaN 144.43 1 139.76 139.26 140.26 -4.6694 0 0 0 0.22632 1 28598 28598 3.0723 2.9003 1 + 28276 24026 18886 18893 27869 27869 0.06152153428206475 LQNHHFYKRKR 11 Unmodified _LQNHHFYKRKR_ 0 0 0 REV__ENST00000519583.5_1_5:178030620-178044013:-|nuORF REV__ENST00000519583.5_1_5:178030620-178044013:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 509.62017822265625 3 509.619892 1525.83785 NaN NaN NaN NaN NaN NaN NaN 140.89 1 140.89 140.39 141.39 0 0 0 0 0.22632 1 28060 28060 1.4551 1.4546 1 + 28277 15331 18887 18894 27870 27870 0.09596248616753655 LQNHKRKKLRF 11 Unmodified _LQNHKRKKLRF_ 0 0 0 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2720947265625 3 489.972155 1466.89463 NaN NaN NaN NaN NaN NaN NaN 150.44 1 145.71 145.21 146.21 -4.7323 0 0 0 0.23698 1 29880 29880 1.1098 0.096179 1 28278 6363 18888 18895 27871 27871 0.17986296173285155 LQPDSRCIY 9 Unmodified _LQPDSRCIY_ 0 0 0 ENST00000348428.7_2_18:56414932-56414992:+|nuORF ENST00000348428.7_2_18:56414932-56414992:+|nuORF ENST00000348428.7_2_18:56414932-56414992:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7685546875 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 43.964 1 43.964 43.464 44.464 0 0 0 0 0.23508 1 8238 8238 7.2892 0 1 28279 8917 18889 18896 27872 27872 -0.020390912968423436 LQPEPRRRRRK 11 Unmodified _LQPEPRRRRRK_ 0 0 0 REV__ENSG00000129682|ENST00000315930|FGF13 REV__ENSG00000129682|ENST00000315930|FGF13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 746.3702392578125 2 746.458199 1490.90185 NaN NaN NaN NaN NaN NaN NaN 166.76 1 161.82 161.32 162.32 -4.948 0 0 0 0.23698 1 32732 32732 2.2828 1.0894 1 + 28280 15971 18890 18897 27873 27873 0.1760302877369213 LQPIFAIIL 9 Unmodified _LQPIFAIIL_ 0 0 0 tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1 tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1 tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.2021179199219 3 343.223194 1026.64775 NaN NaN NaN NaN NaN NaN NaN 80.276 1 76.766 76.266 77.266 -3.5102 0 0 0 0.19657 1 15678 15678 4.897 1.6157 1 28281 26370 18891 18898 27874 27874 0.13549568901862585 LQPITRLRTY 10 Unmodified _LQPITRLRTY_ 0 0 0 ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7723388671875 2 630.874779 1259.73501 NaN NaN NaN NaN NaN NaN NaN 102.7 1 102.7 102.2 103.2 0 0 0 0 0.22588 1 20171 20171 3.9444 0 1 28282 258 18892 18899 27875 27875 0.11552743105471563 LQPKCHRDECL 11 Unmodified _LQPKCHRDECL_ 0 0 0 nc|ENSG00000162413|Q9UJP4-2|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 671.1851196289062 2 671.323739 1340.63293 NaN NaN NaN NaN NaN NaN NaN 169.34 1 169.34 168.84 169.84 0 0 0 0 0.23324 1 34751 34751 5.7319 0.83484 1 28283 12411 18893 18900 27876 27876 -0.023766143001012097 LQPLRRRMRVP 11 Unmodified _LQPLRRRMRVP_ 0 0 0 REV__CEP170B|p.H885Tfs*28|2|0.25|ENSG00000099814|chr14:104886886-104886886|C/-|frameshift_variant REV__CEP170B|p.H885Tfs*28|2|0.25|ENSG00000099814|chr14:104886886-104886886|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 711.1470947265625 2 711.435347 1420.85614 NaN NaN NaN NaN NaN NaN NaN 175.86 1 170.96 170.46 171.46 -4.9008 0 0 0 0.22632 1 35056 35056 0.026206 0.026206 1 + 28284 13377 18894 18901 27877 27877 0.1625466726711693 LQPNDPVTN 9 Unmodified _LQPNDPVTN_ 0 0 0 ENST00000481441.1_1_6:33163678-33163975:-|nuORF ENST00000481441.1_1_6:33163678-33163975:-|nuORF ENST00000481441.1_1_6:33163678-33163975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 333.1692810058594 3 333.169818 996.487624 NaN NaN NaN NaN NaN NaN NaN 99.176 1 95.22 94.72 95.72 -3.9564 0 0 0 0.23508 1 19040 19040 1.1933 0.23107 1 28285 10374 18895 18902 27878 27878 -0.010760108331396623 LQPQLIQPQ 9 Unmodified _LQPQLIQPQ_ 0 0 0 ENST00000407916.2_1_7:55005616-55005874:+|nuORF;nc|ENSG00000100852|Q13017-3|ARHGAP5;nc|ENSG00000100852|Q13017-4|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5 ENST00000407916.2_1_7:55005616-55005874:+|nuORF ENST00000407916.2_1_7:55005616-55005874:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2609252929688 2 532.808574 1063.60259 0.36098 0.00019233 0.26241 0.00013981 0.62338 0.00033214 533.3110162942897 145.24 0.10771 140.29 140.24 140.34 -4.9445 4 2 2 0 0 0 0.81703 1 28071 28071 6.2058 0 1 868770 28286 2018 18896 18903 27879 27879 0.07333718368658992 LQPTWLWWRRW 11 Unmodified _LQPTWLWWRRW_ 0 0 0 REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78515625 3 543.293005 1626.85719 0.27056 0.00014699 4.2377 0.0023023 4.5082 0.0024493 543.6278091129201 141.05 0.20917 136.4 136.3 136.51 -4.6493 6 5 2 0 0 0 0.96225 1 27864 27864 0.08335 0 1 825780 + 28287 20459 18897 18904 27880 27880 0.06883204907649088 LQQFNTLAQ 9 Unmodified _LQQFNTLAQ_ 0 0 0 LRRC49|p.A486T|1|0.35|ENSG00000137821|chr15:71009855-71009855|G/A|missense_variant LRRC49|p.A486T|1|0.35|ENSG00000137821|chr15:71009855-71009855|G/A|missense_variant LRRC49|p.A486T|1|0.35|ENSG00000137821|chr15:71009855-71009855|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2867431640625 2 531.782556 1061.55056 0.26758 0.00014229 -0.076516 -4.069E-05 0.19106 0.0001016 531.7823762432658 42.01 1.2688 39.359 38.755 40.024 -2.651 83 35 4 0 0 0 0.55979 1 7545 7545 15.847 1.9411 1 3391500 28288 12088 18898 18905 27881 27881 0.022245549548870258 LQQMLLRY 8 Unmodified _LQQMLLRY_ 0 0 0 nc|ENSG00000205838|Q6PF05-2|TTC23L nc|ENSG00000205838|Q6PF05-2|TTC23L nc|ENSG00000205838|Q6PF05-2|TTC23L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2823486328125 2 532.799694 1063.58484 -0.16287 -8.6775E-05 1.0854 0.00057828 0.9225 0.00049151 532.800718373058 94.058 0.30858 94.058 93.97 94.279 0 10 8 2 0 0 0 0.93477 1 18424 18424 18.135 7.3111 1 684240 28289 12566 18899 18906 27882 27882 0.05558679842147285 LQRHRHRHHRH 11 Unmodified _LQRHRHRHHRH_ 0 0 0 BEAN1|p.P122Hfs*50|1|0.38|ENSG00000166546|chr16:66477631-66477631|C/-|frameshift_variant;ENSG00000166546|ENST00000536005|BEAN1 BEAN1|p.P122Hfs*50|1|0.38|ENSG00000166546|chr16:66477631-66477631|C/-|frameshift_variant BEAN1|p.P122Hfs*50|1|0.38|ENSG00000166546|chr16:66477631-66477631|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6782836914062 3 523.958013 1568.85221 0.18597 9.7438E-05 -1.5396 -0.0008067 -1.3537 -0.00070926 523.9572311713526 145.67 0.13881 145.67 145.55 145.69 0 5 3 2 0 0 0 0.96192 1 29100 29100 2.8433 0.59056 1 2036800 28290 313 18900 18907 27883 27883 0.09053758608297358 LQRKQAPL 8 Unmodified _LQRKQAPL_ 0 0 0 REV__nc|nan|Q6P1W5-2|C1orf94 REV__nc|nan|Q6P1W5-2|C1orf94 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.2082824707031 3 318.534543 952.581799 -0.44515 -0.0001418 0.30863 9.8311E-05 -0.13652 -4.3486E-05 318.534606008988 24.194 0.85411 24.194 23.657 24.511 0 60 24 3 0 0 0 8448 1 4158 4158 20.454 0 1 5257800 + 28291 16685 18901 18908 27884 27884 0.10361172779641947 LQRKQSERKFY 11 Unmodified _LQRKQSERKFY_ 0 0 0 nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENSG00000135048|ENST00000377044|CEMIP2 nc|ENSG00000135048|Q9UHN6-2|CEMIP2 nc|ENSG00000135048|Q9UHN6-2|CEMIP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.393310546875 2 741.912424 1481.8103 NaN NaN NaN NaN NaN NaN NaN 141.08 1 141.08 140.58 141.58 0 0 0 0 0.22632 1 28104 28104 0.026206 0 1 28292 3895 18902 18909 27885 27885 0.08866300565887286 LQRLHKAL 8 Unmodified _LQRLHKAL_ 0 0 0 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant;ENSG00000089558|ENST00000264661|KCNH4 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26495361328125 2 489.813993 977.613434 -0.16911 -8.2832E-05 0.38253 0.00018737 0.21342 0.00010454 489.8140704891728 92.971 0.7178 89.127 88.817 89.535 -3.844 32 20 3 0 0 0 0.98792 1 17833 17833 5.2307 0 1 1280300 28293 1763 18903 18910 27886 27886 0.1237316553359733 LQRLQDFYQFF 11 Unmodified _LQRLQDFYQFF_ 0 0 0 REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 752.883544921875 2 752.882801 1503.75105 NaN NaN NaN NaN NaN NaN NaN 168.54 1 163.66 163.16 164.16 -4.8793 0 0 0 0.2367 1 33228 33228 2.9952 0.26005 1 + 28294 16586 18904 18911 27887 27887 0.019324045516668775 LQRLRDIS 8 Unmodified _LQRLRDIS_ 0 0 0 ENSG00000127129|ENST00000372587|EDN2 ENSG00000127129|ENST00000372587|EDN2 ENSG00000127129|ENST00000372587|EDN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.1647033691406 3 334.201452 999.582528 NaN NaN NaN NaN NaN NaN NaN 80.151 1 80.151 79.651 80.651 0 0 0 0 0.21486 1 15604 15604 0.40072 0 1 28295 3464 18905 18912 27888 27888 0.08271967428686366 LQRLRDIS 8 Unmodified _LQRLRDIS_ 0 0 0 ENSG00000127129|ENST00000372587|EDN2 ENSG00000127129|ENST00000372587|EDN2 ENSG00000127129|ENST00000372587|EDN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.20074462890625 3 334.201452 999.582528 NaN NaN NaN NaN NaN NaN NaN 122.36 1 117.83 117.33 118.33 -4.5305 0 0 0 0.21486 1 23556 23556 0.40072 0 1 28296 3464 18905 18912 27889 27889 0.08271967428686366 LQRNPLPPILG 11 Unmodified _LQRNPLPPILG_ 0 0 0 ENSG00000177169|ENST00000321867|ULK1;ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant;ENST00000541761.2_1_12:132400503-132400806:+|nuORF;ULK1|p.S638Afs*9|1|0.32|ENSG00000177169|chr12:131916426-131916426|C/-|frameshift_variant ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 609.3772583007812 2 609.371872 1216.72919 NaN NaN NaN NaN NaN NaN NaN 168.99 1 164.2 163.7 164.7 -4.7898 0 0 0 0.23379 1 34200 34200 5.2969 2.3016 1 28297 6499 18906 18913 27890 27890 0.12949644593800258 LQRPNKYIW 9 Unmodified _LQRPNKYIW_ 0 0 0 nc|ENSG00000185684|Q6ZTU2-4|EP400P1;nc|ENSG00000185684|Q6ZTU2-2|EP400P1 nc|ENSG00000185684|Q6ZTU2-4|EP400P1 nc|ENSG00000185684|Q6ZTU2-4|EP400P1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 609.4052734375 2 609.343115 1216.67168 NaN NaN NaN NaN NaN NaN NaN 169.22 1 164.43 163.93 164.93 -4.7898 0 0 0 0.23508 1 34265 34265 3.5965 0.8613 1 28298 12514 18907 18914 27891 27891 0.07200802388229022 LQRQRRWRWRG 11 Unmodified _LQRQRRWRWRG_ 0 0 0 REV__ENST00000263360.10_1_11:85955988-85956345:+|nuORF REV__ENST00000263360.10_1_11:85955988-85956345:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27001953125 3 533.306419 1596.89743 NaN NaN NaN NaN NaN NaN NaN 60.172 1 60.172 59.672 60.672 0 0 0 0 0.22632 1 11533 11533 0.094841 0.094277 1 + 28299 20211 18908 18915 27892 27892 0.12285564350781897 LQRQRRWRWRG 11 Unmodified _LQRQRRWRWRG_ 0 0 0 REV__ENST00000263360.10_1_11:85955988-85956345:+|nuORF REV__ENST00000263360.10_1_11:85955988-85956345:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2758178710938 3 533.306419 1596.89743 NaN NaN NaN NaN NaN NaN NaN 69.461 1 65.925 65.425 66.425 -3.5362 0 0 0 0.22632 1 13078 13078 0.094841 0 1 + 28300 20211 18908 18915 27893 27893 0.12285564350781897 LQRQRRWRWRG 11 Unmodified _LQRQRRWRWRG_ 0 0 0 REV__ENST00000263360.10_1_11:85955988-85956345:+|nuORF REV__ENST00000263360.10_1_11:85955988-85956345:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2706298828125 3 533.306419 1596.89743 NaN NaN NaN NaN NaN NaN NaN 123.76 1 119.17 118.67 119.67 -4.5926 0 0 0 0.22632 1 23821 23821 0 0 1 + 28301 20211 18908 18915 27894 27894 0.12285564350781897 LQRTPKIQVY 10 Unmodified _LQRTPKIQVY_ 0 0 0 B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7730102539062 2 623.36933 1244.72411 0.075636 4.7149E-05 0.38963 0.00024288 0.46527 0.00029003 623.3697266091933 65.291 0.66246 65.291 64.959 65.622 0 31 18 2 0 0 0 1.1138 1 12586 12586 18.122 0 1 5944900 28302 286 18909 18916 27895 27895 0.11153340731175376 LQSISNYLQ 9 Unmodified _LQSISNYLQ_ 0 0 0 nc|ENSG00000149305|O95264-2|HTR3B;ENSG00000149305|ENST00000260191|HTR3B nc|ENSG00000149305|O95264-2|HTR3B nc|ENSG00000149305|O95264-2|HTR3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2822875976562 2 533.282389 1064.55022 0.11607 6.1899E-05 -0.29865 -0.00015927 -0.18258 -9.7368E-05 533.2822276099546 97.396 2.1933 93.299 92.281 94.474 -4.0978 199 62 4 0 0 0 0.55979 1 19279 19279 15.847 3.3156 1 71232000 28303 4786 18910 18917 27896 27896 0.02053135235018999 LQSLFGPAE 9 Unmodified _LQSLFGPAE_ 0 0 0 ENST00000600274.5_1_19:42392153-42396275:+|nuORF ENST00000600274.5_1_19:42392153-42396275:+|nuORF ENST00000600274.5_1_19:42392153-42396275:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.253662109375 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 43.714 1 40.924 40.424 41.424 -2.79 0 0 0 0.091359 1 8199 8199 39.957 7.8404 1 28304 11701 18911 18918 27897 27897 0.009820786605587273 LQSLNDLPG 9 Unmodified _LQSLNDLPG_ 0 0 0 ENST00000505048.1_1_5:108924266-108924368:+|nuORF ENST00000505048.1_1_5:108924266-108924368:+|nuORF ENST00000505048.1_1_5:108924266-108924368:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72344970703125 2 478.756007 955.497461 -0.096664 -4.6278E-05 -0.061411 -2.9401E-05 -0.15808 -7.5679E-05 478.755758554754 49.185 0.4233 46.303 46.166 46.59 -2.8811 16 11 2 0 0 0 0.66788 1 9365 9365 22.736 0 1 473340 28305 10666 18912 18919 27898 27898 0.017931771722373924 LQSMRTRRRRV 11 Unmodified _LQSMRTRRRRV_ 0 0 0 ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;ENST00000401044.7_1_1:59134235-59156019:-|nuORF ENSG00000162601|ENST00000472487|MYSM1 ENSG00000162601|ENST00000472487|MYSM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.18304443359375 4 365.469118 1457.84737 0.11826 4.3221E-05 -1.1157 -0.00040777 -0.99748 -0.00036455 365.4686892609995 46.214 0.93621 46.214 45.725 46.661 0 81 26 4 0 0 0 0.88374 1 8657 8657 8.4443 3.0416 1 7568300 28306 5346 18913 18920 27899 27899 0.13675693630625574 LQSMRTRRRRV 11 Unmodified _LQSMRTRRRRV_ 0 0 0 ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;ENST00000401044.7_1_1:59134235-59156019:-|nuORF ENSG00000162601|ENST00000472487|MYSM1 ENSG00000162601|ENST00000472487|MYSM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 365.1817626953125 4 365.469118 1457.84737 -0.76304 -0.00027887 -0.20561 -7.5144E-05 -0.96865 -0.00035401 365.4690026644913 49.374 0.87379 46.368 45.831 46.705 -3.0068 83 24 4 0 0 0 0.88733 1 8988 8988 5.4027 0.79896 1 7193500 28307 5346 18913 18920 27900 27900 0.13675693630625574 LQSMRTRRRRV 11 Unmodified _LQSMRTRRRRV_ 0 0 0 ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;ENST00000401044.7_1_1:59134235-59156019:-|nuORF ENSG00000162601|ENST00000472487|MYSM1 ENSG00000162601|ENST00000472487|MYSM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 365.469118 1457.84737 -0.35434 -0.0001295 -0.75303 -0.00027521 -1.1074 -0.00040471 365.4688343508422 49.11 1.0112 46.229 45.717 46.729 -2.8811 -0.034751 0.00038121 NaN 8.4443 93 28 4 NaN NaN NaN NaN 0 NaN NaN 0 9945000 28308 5346 18913 18920 0.13675693630625574 LQSMRTRRRRV 11 Unmodified _LQSMRTRRRRV_ 0 0 0 ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;ENST00000401044.7_1_1:59134235-59156019:-|nuORF ENSG00000162601|ENST00000472487|MYSM1 ENSG00000162601|ENST00000472487|MYSM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 365.469118 1457.84737 0.029091 1.0632E-05 -1.1182 -0.00040868 -1.0891 -0.00039805 365.46872663325905 49.347 0.93688 46.348 45.861 46.798 -2.999 0.08468 -0.00015267 NaN 8.4443 85 26 4 NaN NaN NaN NaN 0 NaN NaN 0 6425500 28309 5346 18913 18920 0.13675693630625574 LQSSVTQSI 9 Unmodified _LQSSVTQSI_ 0 0 0 ENST00000345382.6_1_15:83932239-83932266:-|nuORF ENST00000345382.6_1_15:83932239-83932266:-|nuORF ENST00000345382.6_1_15:83932239-83932266:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2353210449219 2 481.761289 961.508025 -0.019619 -9.4516E-06 -0.12764 -6.1491E-05 -0.14726 -7.0942E-05 481.76122394910783 90.45 0.52667 86.591 86.334 86.861 -3.8595 17 14 2 0 0 0 0.42289 1 17691 17691 19.257 0 1 1006900 28310 8905 18914 18921 27901 27901 0.025731598266816036 LQSYNSASK 9 Unmodified _LQSYNSASK_ 0 0 0 REV__nc|ENSG00000157107|Q0JRZ9-2|FCHO2 REV__nc|ENSG00000157107|Q0JRZ9-2|FCHO2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.1695556640625 3 333.169818 996.487624 NaN NaN NaN NaN NaN NaN NaN 101.21 1 97.048 96.548 97.548 -4.1594 0 0 0 0.23508 1 19896 19896 2.4985 0 1 + 28311 17283 18915 18922 27902 27902 -0.01076010833151031 LQTAEEHMQ 9 Unmodified _LQTAEEHMQ_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7752685546875 2 543.747856 1085.48116 NaN NaN NaN NaN NaN NaN NaN 58.724 1 55.472 54.972 55.972 -3.2517 0 0 0 0.18272 1 10916 10916 0.37959 0.26855 1 28312 4685 18916 18923 27903 27903 -0.058162720561767856 LQTALTSW 8 Unmodified _LQTALTSW_ 0 0 0 ENST00000270115.7_1_11:551752-552612:+|nuORF ENST00000270115.7_1_11:551752-552612:+|nuORF ENST00000270115.7_1_11:551752-552612:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24853515625 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 135.76 1 131.12 130.62 131.62 -4.6399 0 0 0 0.19342 1 26780 26780 26.884 0 1 28313 8400 18917 18924 27904 27904 0.01858096006139931 LQTLHRRSL 9 Unmodified _LQTLHRRSL_ 0 0 0 REV__ENST00000404992.6_1_2:61729385-61729430:-|nuORF REV__ENST00000404992.6_1_2:61729385-61729430:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2195129394531 3 375.228001 1122.66217 NaN NaN NaN NaN NaN NaN NaN 55.427 1 55.427 54.927 55.927 0 0 0 0 0.23508 1 10583 10583 4.1895 0 1 + 28314 21381 18918 18925 27905 27905 0.10575034102703285 LQVEHQRTL 9 Unmodified _LQVEHQRTL_ 0 0 0 REV__HDAC5|p.E566Gfs*15|1|0.29|ENSG00000108840|chr17:44087599-44087600|-/C|frameshift_variant REV__HDAC5|p.E566Gfs*15|1|0.29|ENSG00000108840|chr17:44087599-44087600|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2064514160156 3 375.212128 1122.61456 -0.10911 -4.0939E-05 0.46562 0.00017471 0.35651 0.00013377 375.2121346973518 22.506 0.35214 21.053 20.838 21.19 -1.4535 16 9 2 0 0 0 0.46882 1 3596 3596 21.537 3.1639 1 362920 + 28315 15141 18919 18926 27906 27906 0.05815335111856257 LQVEHQRTL 9 Unmodified _LQVEHQRTL_ 0 0 0 REV__HDAC5|p.E566Gfs*15|1|0.29|ENSG00000108840|chr17:44087599-44087600|-/C|frameshift_variant REV__HDAC5|p.E566Gfs*15|1|0.29|ENSG00000108840|chr17:44087599-44087600|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2121276855469 3 375.212128 1122.61456 -1.2008 -0.00045056 0.63465 0.00023813 -0.56615 -0.00021243 375.21235426031535 22.802 0.27168 21.014 20.885 21.156 -1.7886 10 7 2 0 0 0 0.46882 1 3635 3635 21.537 4.0943 1 282880 + 28316 15141 18919 18926 27907 27907 0.05815335111856257 LQVLVLFLVV 10 Unmodified _LQVLVLFLVV_ 0 0 0 ENST00000548511.5_1_12:88429578-88437530:+|nuORF ENST00000548511.5_1_12:88429578-88437530:+|nuORF ENST00000548511.5_1_12:88429578-88437530:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 571.8806762695312 2 571.88101 1141.74747 NaN NaN NaN NaN NaN NaN NaN 9.3406 1 9.3406 8.8406 9.8406 0 0 0 0 0.22588 1 1070 1070 0 0 1 28317 11153 18920 18927 27908 27908 0.18226386515766535 LQVPTPEEM 9 Unmodified _LQVPTPEEM_ 0 0 0 BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2;nc|ENSG00000174672|Q8IWQ3-6|BRSK2 BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2604370117188 2 522.257525 1042.5005 NaN NaN NaN NaN NaN NaN NaN 71.273 1 67.806 67.306 68.306 -3.467 0 0 0 0.1761 1 13507 13507 26.884 0 1 28318 337 18921 18928 27909 27909 -0.01905315765270643 LQVQYLQQMYQ 11 Unmodified _LQVQYLQQMYQ_ 0 0 0 REV__ENSG00000182827|ENST00000366812|ACBD3 REV__ENSG00000182827|ENST00000366812|ACBD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2443542480469 3 481.242988 1440.70714 NaN NaN NaN NaN NaN NaN NaN 105.8 1 101.71 101.21 102.21 -4.0913 0 0 0 0.22632 1 20355 20355 0.0059557 0.0045745 1 + 28319 18802 18922 18929 27910 27910 0.004410520630699466 LQVVPKKVS 9 Unmodified _LQVVPKKVS_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2;FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant;FAT2|p.V3716Ffs*44|1|0.22|ENSG00000086570|chr5:151521447-151521447|C/-|frameshift_variant;FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.2102355957031 3 333.218332 996.633166 NaN NaN NaN NaN NaN NaN NaN 80.904 1 77.347 76.847 77.847 -3.557 0 0 0 0.23508 1 15797 15797 2.4985 1.0166 1 28320 1696 18923 18930 27911 27911 0.1347149675370929 LQVWKKHF 8 Unmodified _LQVWKKHF_ 0 0 0 ENSG00000151461|ENST00000357604|UPF2;UPF2|p.R251S|1|0.2|ENSG00000151461|chr10:12029137-12029137|C/A|missense_variant;UPF2|p.N293Ifs*15|1|0.32|ENSG00000151461|chr10:12029012-12029012|T/-|frameshift_variant;UPF2|p.E347Tfs*12|1|0.05|ENSG00000151461|chr10:12028851-12028852|-/AGAGT|frameshift_variant ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7697143554688 2 543.316369 1084.61818 0.08 4.3465E-05 -0.80216 -0.00043582 -0.72216 -0.00039236 543.8167780130921 78.51 0.1394 74.851 74.765 74.904 -3.6588 5 3 2 0 0 0 0.98792 1 14962 14962 9.3474 0 1 604210 28321 4868 18924 18931 27912 27912 0.07926049676370894 LQWANGAL 8 Unmodified _LQWANGAL_ 0 0 0 REV__SP4|p.T140Lfs*28|1|0.2|ENSG00000105866|chr7:21429579-21429579|A/-|frameshift_variant REV__SP4|p.T140Lfs*28|1|0.2|ENSG00000105866|chr7:21429579-21429579|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2362060546875 2 436.734877 871.455202 -0.10757 -4.6981E-05 0.13484 5.8889E-05 0.027268 1.1909E-05 436.73474562469096 100.18 0.38458 96.019 95.835 96.22 -4.1594 15 10 2 0 0 0 0.72861 1 19716 19716 10.183 0 1 545370 + 28322 15021 18925 18932 27913 27913 0.014332465545066952 LQYREVAT 8 Unmodified _LQYREVAT_ 0 0 0 REV__nc|ENSG00000293504|Q99463|NPY6R REV__nc|ENSG00000293504|Q99463|NPY6R MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2649230957031 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 87.719 1 83.723 83.223 84.223 -3.9953 0 0 0 0.2325 1 16705 16705 3.5871 0.95582 1 + 28323 24330 18926 18933 27914 27914 0.023328834091330464 LQYSIGVK 8 Unmodified _LQYSIGVK_ 0 0 0 REV__ENST00000425085.1_1_21:24780104-24780850:-|nuORF REV__ENST00000425085.1_1_21:24780104-24780850:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 303.1806945800781 3 303.179766 906.517468 NaN NaN NaN NaN NaN NaN NaN 93.736 1 93.736 93.236 94.236 0 0 0 0 0.21486 1 18347 18347 1.6526 0 1 + 28324 21556 18927 18934 27915 27915 0.060469729028682195 LRAGGKILT 9 Unmodified _LRAGGKILT_ 0 0 0 ENST00000549533.1_1_19:49119330-49119489:-|nuORF;ENST00000551749.5_1_19:49119132-49119489:-|nuORF;ENST00000552347.5_1_19:49118631-49119489:-|nuORF;nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18 ENST00000549533.1_1_19:49119330-49119489:-|nuORF ENST00000549533.1_1_19:49119330-49119489:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2304992675781 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 124.95 1 124.95 124.45 125.45 0 0 0 0 0.23508 1 24642 24642 0.26902 0 1 28325 1326 18928 18935 27916 27916 0.11986056922410171 LRAGGKILT 9 Unmodified _LRAGGKILT_ 0 0 0 ENST00000549533.1_1_19:49119330-49119489:-|nuORF;ENST00000551749.5_1_19:49119132-49119489:-|nuORF;ENST00000552347.5_1_19:49118631-49119489:-|nuORF;nc|ENSG00000063177|Q07020-2|RPL18;ENSG00000063177|ENST00000549920|RPL18 ENST00000549533.1_1_19:49119330-49119489:-|nuORF ENST00000549533.1_1_19:49119330-49119489:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16473388671875 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 154.98 1 149.73 149.23 150.23 -5.2526 0 0 0 0.23508 1 30052 30052 0.26902 0 1 28326 1326 18928 18935 27917 27917 0.11986056922410171 LRAICPFS 8 Unmodified _LRAICPFS_ 0 0 0 ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1;ENST00000506586.1_1_5:93928514-93929327:+|nuORF ENSG00000138399|ENST00000453153|FASTKD1 ENSG00000138399|ENST00000453153|FASTKD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.74871826171875 2 453.746931 905.479308 NaN NaN NaN NaN NaN NaN NaN 5.0589 1 5.0589 4.5589 5.5589 0 0 0 0 0.21486 1 208 208 2.3027 0 1 28327 4168 18929 18936 27918 27918 0.022787637165492924 LRALVYIF 8 Unmodified _LRALVYIF_ 0 0 0 ENST00000359653.4_1_10:126662939-126670342:+|nuORF ENST00000359653.4_1_10:126662939-126670342:+|nuORF ENST00000359653.4_1_10:126662939-126670342:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.1695251464844 3 332.207656 993.601138 NaN NaN NaN NaN NaN NaN NaN 62.877 1 62.877 62.377 63.377 0 0 0 0 0.21486 1 12082 12082 3.5965 0 1 28328 9003 18930 18937 27919 27919 0.1040812907056079 LRAPMYVWLWV 11 Unmodified _LRAPMYVWLWV_ 0 0 0 ENST00000370355.2_1_10:102123393-102123534:+|nuORF ENST00000370355.2_1_10:102123393-102123534:+|nuORF ENST00000370355.2_1_10:102123393-102123534:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.730224609375 3 478.596926 1432.76895 0.40706 0.00019482 -0.50057 -0.00023957 -0.093511 -4.4754E-05 478.59684079674025 21.058 0.28109 19.584 19.42 19.701 -1.4742 15 7 3 0 0 0 0.66234 1 3524 3524 0.50596 0.50596 1 559460 28329 9140 18931 18938 27920 27920 0.06987448272866459 LRARKLKSP 9 Unmodified _LRARKLKSP_ 0 0 0 PDZD4|p.R379Gfs*28|1|0.45|ENSG00000067840|chrX:153804528-153804528|G/-|frameshift_variant;PDZD4|p.G344Afs*63|4|0.22|ENSG00000067840|chrX:153804632-153804632|C/-|frameshift_variant;PDZD4|p.L601Pfs*18|1|0.28|ENSG00000067840|chrX:153803861-153803862|-/G|frameshift_variant;nc|ENSG00000067840|Q76G19-2|PDZD4;nc|ENSG00000067840|Q76G19|PDZD4;ENSG00000067840|ENST00000393758|PDZD4 PDZD4|p.R379Gfs*28|1|0.45|ENSG00000067840|chrX:153804528-153804528|G/-|frameshift_variant PDZD4|p.R379Gfs*28|1|0.45|ENSG00000067840|chrX:153804528-153804528|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0492248535156 3 356.904859 1067.69275 -0.43836 -0.00015645 0.99653 0.00035567 0.55817 0.00019921 356.90519449646956 34.563 0.41553 32.246 32.015 32.43 -2.3175 22 11 3 0 0 0 0.8799 1 6368 6368 2.4985 1.722 1 687570 28330 1395 18932 18939 27921 27921 0.16160812487760268 LRARKLKSP 9 Unmodified _LRARKLKSP_ 0 0 0 PDZD4|p.R379Gfs*28|1|0.45|ENSG00000067840|chrX:153804528-153804528|G/-|frameshift_variant;PDZD4|p.G344Afs*63|4|0.22|ENSG00000067840|chrX:153804632-153804632|C/-|frameshift_variant;PDZD4|p.L601Pfs*18|1|0.28|ENSG00000067840|chrX:153803861-153803862|-/G|frameshift_variant;nc|ENSG00000067840|Q76G19-2|PDZD4;nc|ENSG00000067840|Q76G19|PDZD4;ENSG00000067840|ENST00000393758|PDZD4 PDZD4|p.R379Gfs*28|1|0.45|ENSG00000067840|chrX:153804528-153804528|G/-|frameshift_variant PDZD4|p.R379Gfs*28|1|0.45|ENSG00000067840|chrX:153804528-153804528|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 356.904859 1067.69275 0.19485 6.9544E-05 0.26927 9.6105E-05 0.46413 0.00016565 357.2391902499589 34.453 0.4535 32.2 31.87 32.324 -2.2527 -0.027985 -0.00037382 NaN 2.4985 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1259000 28331 1395 18932 18939 0.16160812487760268 LRARWRRRSRR 11 Unmodified _LRARWRRRSRR_ 0 0 0 ENSG00000160951|ENST00000292513|PTGER1 ENSG00000160951|ENST00000292513|PTGER1 ENSG00000160951|ENST00000292513|PTGER1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4114379882812 2 784.982707 1567.95086 NaN NaN NaN NaN NaN NaN NaN 103.92 1 103.92 103.42 104.42 0 0 0 0 0.23698 1 20427 20427 0 0 1 28332 5276 18933 18940 27922 27922 0.18960361853328322 LRATKLKKPI 10 Unmodified _LRATKLKKPI_ 0 0 0 MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1 MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 584.31396484375 2 584.400433 1166.78631 NaN NaN NaN NaN NaN NaN NaN 163.15 1 163.15 162.65 163.65 0 0 0 0 0.22588 1 32861 32861 6.7232 2.7788 1 28333 2672 18934 18941 27923 27923 0.20959111870183733 LRAVPLSLLL 10 Unmodified _LRAVPLSLLL_ 0 0 0 REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF REV__ENST00000609516.1_1_1:38148823-38149105:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.777099609375 2 547.868434 1093.72232 NaN NaN NaN NaN NaN NaN NaN 164.04 1 158.97 158.47 159.47 -5.0648 0 0 0 0.22588 1 31958 31958 6.7232 1.4925 1 + 28334 23486 18935 18942 27924 27924 0.1792033171325329 LRCRRRRRPRP 11 Unmodified _LRCRRRRRPRP_ 0 0 0 ENST00000315367.3_1_8:96146046-96166295:+|nuORF ENST00000315367.3_1_8:96146046-96166295:+|nuORF ENST00000315367.3_1_8:96146046-96166295:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.477783203125 3 507.979649 1520.91712 -0.052309 -2.6572E-05 0.87102 0.00044246 0.81871 0.00041589 508.3147452152151 139.2 0.42218 134.56 134.27 134.69 -4.6439 13 11 2 0 0 0 0.89122 1 27475 27475 0.50596 0 1 1936600 28335 8675 18936 18943 27925 27925 0.17749617089907588 LRCSKLFKV 9 Unmodified _LRCSKLFKV_ 0 0 0 REV__ENSG00000143436|ENST00000368830|MRPL9 REV__ENSG00000143436|ENST00000368830|MRPL9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7721557617188 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 27.29 1 25.508 25.008 26.008 -1.7821 0 0 0 0.19687 1 4845 4845 8.1555 4.8742 1 + 28336 16727 18937 18944 27926 27926 0.1051524563017665 LRDLLYTQG 9 Unmodified _LRDLLYTQG_ 0 0 0 KIF1A|p.A385T|1|0.38|ENSG00000130294|chr2:240773141-240773141|C/T|missense_variant KIF1A|p.A385T|1|0.38|ENSG00000130294|chr2:240773141-240773141|C/T|missense_variant KIF1A|p.A385T|1|0.38|ENSG00000130294|chr2:240773141-240773141|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 88.53 1 84.78 84.28 85.28 -3.7501 0 0 0 0.23508 1 16948 16948 9.544 0.56773 1 28337 11999 18938 18945 27927 27927 0.0461712798901317 LRDLLYTQG 9 Unmodified _LRDLLYTQG_ 0 0 0 KIF1A|p.A385T|1|0.38|ENSG00000130294|chr2:240773141-240773141|C/T|missense_variant KIF1A|p.A385T|1|0.38|ENSG00000130294|chr2:240773141-240773141|C/T|missense_variant KIF1A|p.A385T|1|0.38|ENSG00000130294|chr2:240773141-240773141|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21673583984375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 88.638 1 84.887 84.387 85.387 -3.7501 0 0 0 0.23508 1 16970 16970 10.151 0 1 28338 11999 18938 18945 27928 27928 0.0461712798901317 LRDPEGGLFAS 11 Unmodified _LRDPEGGLFAS_ 0 0 0 REV__ENST00000309446.10_1_2:208030278-208030395:-|nuORF REV__ENST00000309446.10_1_2:208030278-208030395:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7120056152344 3 387.868139 1160.58259 -0.3743 -0.00014518 0.52768 0.00020467 0.15338 5.9491E-05 387.86835166744453 36.595 0.42459 34.257 34.061 34.486 -2.3375 17 11 2 0 0 0 0.78834 1 6458 6458 5.1984 2.1262 1 845470 + 28339 20468 18939 18946 27929 27929 0.00871922638043543 LRDPEGGLFAS 11 Unmodified _LRDPEGGLFAS_ 0 0 0 REV__ENST00000309446.10_1_2:208030278-208030395:-|nuORF REV__ENST00000309446.10_1_2:208030278-208030395:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 387.868139 1160.58259 -0.62715 -0.00024325 0.58236 0.00022588 -0.044783 -1.737E-05 387.868358377247 36.786 0.38155 34.317 34.083 34.465 -2.4688 0.020552 0.00025569 NaN 5.1984 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 749900 + 28340 20468 18939 18946 0.00871922638043543 LRDPEGGLFAS 11 Unmodified _LRDPEGGLFAS_ 0 0 0 REV__ENST00000309446.10_1_2:208030278-208030395:-|nuORF REV__ENST00000309446.10_1_2:208030278-208030395:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 387.868139 1160.58259 0.1091 4.2317E-05 0.12065 4.6796E-05 0.22975 8.9114E-05 387.8681845739227 36.663 0.41042 34.315 34.106 34.516 -2.3479 0.018597 -0.00028156 NaN 5.1984 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 780630 + 28341 20468 18939 18946 0.00871922638043543 LRDPEGGLFAS 11 Unmodified _LRDPEGGLFAS_ 0 0 0 REV__ENST00000309446.10_1_2:208030278-208030395:-|nuORF REV__ENST00000309446.10_1_2:208030278-208030395:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 387.868139 1160.58259 -0.3743 -0.00014518 0.52768 0.00020467 0.15338 5.9491E-05 387.86835166744453 36.595 0.42459 34.257 34.061 34.486 -2.3375 -0.039149 0.00019207 NaN 5.1984 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 845470 + 28342 20468 18939 18946 0.00871922638043543 LRDQRPTNYH 10 Unmodified _LRDQRPTNYH_ 0 0 0 ENST00000414608.1_1_7:65238610-65238703:+|nuORF;ENST00000441415.1_1_7:64544483-64544600:+|nuORF ENST00000414608.1_1_7:65238610-65238703:+|nuORF ENST00000414608.1_1_7:65238610-65238703:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.8890686035156 3 433.889937 1298.64798 NaN NaN NaN NaN NaN NaN NaN 132.08 1 127.44 126.94 127.94 -4.6399 0 0 0 0.22588 1 26032 26032 1.9064 0.57673 1 28343 9604 18940 18947 27930 27930 0.01060336883756463 LRDQRPTNYH 10 Unmodified _LRDQRPTNYH_ 0 0 0 ENST00000414608.1_1_7:65238610-65238703:+|nuORF;ENST00000441415.1_1_7:64544483-64544600:+|nuORF ENST00000414608.1_1_7:65238610-65238703:+|nuORF ENST00000414608.1_1_7:65238610-65238703:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.8890075683594 3 433.889937 1298.64798 NaN NaN NaN NaN NaN NaN NaN 156.32 1 151.53 151.03 152.03 -4.7885 0 0 0 0.22588 1 31085 31085 1.9064 0 1 28344 9604 18940 18947 27931 27931 0.01060336883756463 LRDQRPTNYH 10 Unmodified _LRDQRPTNYH_ 0 0 0 ENST00000414608.1_1_7:65238610-65238703:+|nuORF;ENST00000441415.1_1_7:64544483-64544600:+|nuORF ENST00000414608.1_1_7:65238610-65238703:+|nuORF ENST00000414608.1_1_7:65238610-65238703:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 433.8888854980469 3 433.889937 1298.64798 NaN NaN NaN NaN NaN NaN NaN 161.24 1 156.01 155.51 156.51 -5.2299 0 0 0 0.22588 1 31316 31316 1.9064 0.57673 1 28345 9604 18940 18947 27932 27932 0.01060336883756463 LRDQRPTNYH 10 Unmodified _LRDQRPTNYH_ 0 0 0 ENST00000414608.1_1_7:65238610-65238703:+|nuORF;ENST00000441415.1_1_7:64544483-64544600:+|nuORF ENST00000414608.1_1_7:65238610-65238703:+|nuORF ENST00000414608.1_1_7:65238610-65238703:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 433.8882751464844 3 433.889937 1298.64798 NaN NaN NaN NaN NaN NaN NaN 157.68 1 152.41 151.91 152.91 -5.2712 0 0 0 0.22588 1 30587 30587 1.9064 0.57673 1 28346 9604 18940 18947 27933 27933 0.01060336883756463 LREAQRQQL 9 Unmodified _LREAQRQQL_ 0 0 0 SAPCD1|p.I108Mfs*8|1|0.05|ENSG00000228727|chr6:31764131-31764132|TC/-|frameshift_variant;nc|ENSG00000228727|Q5SSQ6|SAPCD1;ENSG00000228727|ENST00000415669|SAPCD1;ENST00000476085.1_3_6:31731200-31732414:+|nuORF SAPCD1|p.I108Mfs*8|1|0.05|ENSG00000228727|chr6:31764131-31764132|TC/-|frameshift_variant SAPCD1|p.I108Mfs*8|1|0.05|ENSG00000228727|chr6:31764131-31764132|TC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20849609375 3 381.219395 1140.63635 0.77659 0.00029605 -0.13577 -5.176E-05 0.64081 0.00024429 381.21927808598093 27.072 0.31461 25.29 24.993 25.308 -1.7821 15 8 2 0 0 0 0.63326 1 4738 4738 10.8 3.1906 1 1532400 28347 7801 18941 18948 27934 27934 0.07166139860419207 LREEHWKRRIF 11 Unmodified _LREEHWKRRIF_ 0 0 0 REV__ENST00000473481.1_1_10:27066118-27112155:-|nuORF REV__ENST00000473481.1_1_10:27066118-27112155:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6978149414062 3 523.963548 1568.86881 NaN NaN NaN NaN NaN NaN NaN 158.74 1 158.74 158.24 159.24 0 0 0 0 0.23698 1 31872 31872 0.45452 0.087843 1 + 28348 22073 18942 18949 27935 27935 0.10713401931025146 LREEHWKRRIF 11 Unmodified _LREEHWKRRIF_ 0 0 0 REV__ENST00000473481.1_1_10:27066118-27112155:-|nuORF REV__ENST00000473481.1_1_10:27066118-27112155:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6978759765625 3 523.963548 1568.86881 0.18288 9.5824E-05 -1.9199 -0.0010059 -1.737 -0.00091012 524.2959159825039 137.97 0.38126 137.97 137.73 138.11 0 12 10 2 0 0 0 0.96173 1 27332 27332 4.1166 2.3342 1 4887700 + 28349 22073 18942 18949 27936 27936 0.10713401931025146 LREIKQEY 8 Unmodified _LREIKQEY_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;REV__SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.216796875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 84.852 1 84.852 84.352 85.352 0 0 0 0 0.21486 1 16556 16556 10.074 0 1 + 28350 14106;24761;24760 18943 18950 27937 27937 0.0461712798901317 LREPLPGPL 9 Unmodified _LREPLPGPL_ 0 0 0 REV__TBC1D10B|p.P101Qfs*65|1|0.22|ENSG00000169221|chr16:30369882-30369882|G/-|frameshift_variant REV__TBC1D10B|p.P101Qfs*65|1|0.22|ENSG00000169221|chr16:30369882-30369882|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 496.3014221191406 2 496.300384 990.586216 NaN NaN NaN NaN NaN NaN NaN 164.9 1 159.84 159.34 160.34 -5.0648 0 0 0 0.19679 1 32191 32191 1.2148 1.092 1 + 28351 24772 18944 18951 27938 27938 0.0905463720255284 LREQSLPSR 9 Unmodified _LREQSLPSR_ 0 0 0 REV__ENST00000588188.6_1_17:66519938-66520209:+|nuORF REV__ENST00000588188.6_1_17:66519938-66520209:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7791748046875 2 543.306729 1084.59891 0.32066 0.00017421 -1.1507 -0.00062518 -0.83003 -0.00045096 543.8075415675469 148.52 0.14796 143.81 143.75 143.9 -4.7095 6 3 2 0 0 0 0.81359 1 29487 29487 4.5289 0 1 1599500 + 28352 23288 18945 18952 27939 27939 0.059990485947992056 LREYLWDFHKY 11 Unmodified _LREYLWDFHKY_ 0 0 0 REV__ENSG00000130340|ENST00000392185|SNX9 REV__ENSG00000130340|ENST00000392185|SNX9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.39501953125 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 155.51 1 150.22 149.72 150.72 -5.2854 0 0 0 0.22632 1 30162 30162 0.094841 0 1 + 28353 15999 18946 18953 27940 27940 0.015960934430268026 LREYRVAP 8 Unmodified _LREYRVAP_ 0 0 0 REV__ENST00000378700.7_2_6:19838170-19838203:+|nuORF REV__ENST00000378700.7_2_6:19838170-19838203:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 335.21197509765625 3 335.194298 1002.56106 -0.5485 -0.00018385 0.6653 0.000223 0.1168 3.9151E-05 335.1945369428276 59.94 0.59908 56.717 56.395 56.994 -3.2237 27 16 2 0 0 0 0.80867 1 11150 11150 3.9444 0 1 982540 + 28354 21120 18947 18954 27941 27941 0.05988582399993447 LREYRVAP 8 Unmodified _LREYRVAP_ 0 0 0 REV__ENST00000378700.7_2_6:19838170-19838203:+|nuORF REV__ENST00000378700.7_2_6:19838170-19838203:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 335.194298 1002.56106 -0.6154 -0.00020628 1.0561 0.00035401 0.44074 0.00014773 335.1947258919423 56.921 0.34864 56.921 56.744 57.093 0 0.15954 0.00047365 NaN 3.9444 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 702760 + 28355 21120 18947 18954 0.05988582399993447 LREYRVAP 8 Unmodified _LREYRVAP_ 0 0 0 REV__ENST00000378700.7_2_6:19838170-19838203:+|nuORF REV__ENST00000378700.7_2_6:19838170-19838203:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 335.194298 1002.56106 -0.5485 -0.00018385 0.6653 0.000223 0.1168 3.9151E-05 335.1945369428276 59.94 0.59908 56.717 56.395 56.994 -3.2237 -0.044279 8.0632E-05 NaN 3.9444 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 982540 + 28356 21120 18947 18954 0.05988582399993447 LRFEISSEDGF 11 Unmodified _LRFEISSEDGF_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant;ENST00000585476.5_1_19:36227541-36227781:+|nuORF ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.8804016113281 3 433.878704 1298.61428 NaN NaN NaN NaN NaN NaN NaN 145.88 1 141.2 140.7 141.7 -4.6868 0 0 0 0.23689 1 28926 28926 2.8433 0.93691 1 28357 8004 18948 18955 27942 27942 -0.02308129398670644 LRFKKKKKK 9 Unmodified _LRFKKKKKK_ 0 0 0 ENST00000341776.6_1_6:15521185-15521434:+|nuORF ENST00000341776.6_1_6:15521185-15521434:+|nuORF ENST00000341776.6_1_6:15521185-15521434:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2976684570312 2 602.424242 1202.83393 0.39624 0.00023871 -3.4406 -0.0020727 -3.0444 -0.001834 602.9231763975263 152.77 0.17938 152.77 152.7 152.88 0 5 4 2 0 0 0 0.88478 1 30612 30612 0 0 1 3983900 28358 8859 18949 18956 27943 27943 0.24062810861005346 LRFKKKKKK 9 Unmodified _LRFKKKKKK_ 0 0 0 ENST00000341776.6_1_6:15521185-15521434:+|nuORF ENST00000341776.6_1_6:15521185-15521434:+|nuORF ENST00000341776.6_1_6:15521185-15521434:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2993774414062 2 602.424242 1202.83393 0.51636 0.00031107 -4.2909 -0.0025849 -3.7745 -0.0022739 602.4200700286121 157.46 0.17535 152.18 152.04 152.22 -5.2854 6 4 2 0 0 0 0.88478 1 30559 30559 0 0 1 1320300 28359 8859 18949 18956 27944 27944 0.24062810861005346 LRFLLLLFLVR 11 Unmodified _LRFLLLLFLVR_ 0 0 0 NKX6-1|p.A6Gfs*159|1|0.5|ENSG00000163623|chr4:84498212-84498213|-/C|frameshift_variant NKX6-1|p.A6Gfs*159|1|0.5|ENSG00000163623|chr4:84498212-84498213|-/C|frameshift_variant NKX6-1|p.A6Gfs*159|1|0.5|ENSG00000163623|chr4:84498212-84498213|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 468.3141174316406 3 468.314747 1401.92241 NaN NaN NaN NaN NaN NaN NaN 54.748 1 51.613 51.113 52.113 -3.1352 0 0 0 0.22632 1 10110 10110 1.4551 0.94916 1 28360 12690 18950 18957 27945 27945 0.23752806380821312 LRFRQHLL 8 Unmodified _LRFRQHLL_ 0 0 0 ENSG00000130193|ENST00000336138|THEM6 ENSG00000130193|ENST00000336138|THEM6 ENSG00000130193|ENST00000336138|THEM6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2642822265625 2 541.832717 1081.65088 0.35556 0.00019265 -3.8695 -0.0020966 -3.514 -0.001904 542.3322763077273 154.2 0.17722 149.43 149.36 149.54 -4.7684 5 4 2 0 0 0 0.99494 1 30642 30642 13.508 0 1 507340 28361 3592 18951 18958 27946 27946 0.11332256799209972 LRFRRQLLYWF 11 Unmodified _LRFRRQLLYWF_ 0 0 0 nc|ENSG00000100979|P55058-2|PLTP;nc|ENSG00000100979|P55058-4|PLTP;ENSG00000100979|ENST00000372431|PLTP nc|ENSG00000100979|P55058-2|PLTP nc|ENSG00000100979|P55058-2|PLTP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.266845703125 3 533.308655 1596.90414 NaN NaN NaN NaN NaN NaN NaN 63.807 1 63.807 63.307 64.307 0 0 0 0 0.22632 1 12276 12276 0.026206 0.026206 1 28362 12258 18952 18959 27947 27947 0.12956064458830951 LRFRRQLLYWF 11 Unmodified _LRFRRQLLYWF_ 0 0 0 nc|ENSG00000100979|P55058-2|PLTP;nc|ENSG00000100979|P55058-4|PLTP;ENSG00000100979|ENST00000372431|PLTP nc|ENSG00000100979|P55058-2|PLTP nc|ENSG00000100979|P55058-2|PLTP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2787475585938 3 533.308655 1596.90414 NaN NaN NaN NaN NaN NaN NaN 135.1 1 135.1 134.6 135.6 0 0 0 0 0.22632 1 26757 26757 0.026206 0 1 28363 12258 18952 18959 27948 27948 0.12956064458830951 LRFRRQLLYWF 11 Unmodified _LRFRRQLLYWF_ 0 0 0 nc|ENSG00000100979|P55058-2|PLTP;nc|ENSG00000100979|P55058-4|PLTP;ENSG00000100979|ENST00000372431|PLTP nc|ENSG00000100979|P55058-2|PLTP nc|ENSG00000100979|P55058-2|PLTP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2667236328125 3 533.308655 1596.90414 NaN NaN NaN NaN NaN NaN NaN 135.88 1 135.88 135.38 136.38 0 0 0 0 0.22632 1 26920 26920 0.026206 0.025642 1 28364 12258 18952 18959 27949 27949 0.12956064458830951 LRFRRQLLYWF 11 Unmodified _LRFRRQLLYWF_ 0 0 0 nc|ENSG00000100979|P55058-2|PLTP;nc|ENSG00000100979|P55058-4|PLTP;ENSG00000100979|ENST00000372431|PLTP nc|ENSG00000100979|P55058-2|PLTP nc|ENSG00000100979|P55058-2|PLTP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2691040039062 3 533.308655 1596.90414 NaN NaN NaN NaN NaN NaN NaN 131.13 1 126.5 126 127 -4.6359 0 0 0 0.22632 1 25843 25843 0.026206 0 1 28365 12258 18952 18959 27950 27950 0.12956064458830951 LRFRRQLLYWF 11 Unmodified _LRFRRQLLYWF_ 0 0 0 nc|ENSG00000100979|P55058-2|PLTP;nc|ENSG00000100979|P55058-4|PLTP;ENSG00000100979|ENST00000372431|PLTP nc|ENSG00000100979|P55058-2|PLTP nc|ENSG00000100979|P55058-2|PLTP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.275634765625 3 533.308655 1596.90414 NaN NaN NaN NaN NaN NaN NaN 149.85 1 144.73 144.23 145.23 -5.1204 0 0 0 0.22632 1 29039 29039 0.094841 0 1 28366 12258 18952 18959 27951 27951 0.12956064458830951 LRFSEIPMK 9 Unmodified _LRFSEIPMK_ 0 0 0 nc|ENSG00000108604|Q92925-3|SMARCD2;SMARCD2|p.P489Lfs*19|1|0.36|ENSG00000108604|chr17:63833145-63833145|G/-|frameshift_variant;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2;SMARCD2|p.R367Q|1|0.29|ENSG00000108604|chr17:63833990-63833990|C/T|missense_variant nc|ENSG00000108604|Q92925-3|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2118835449219 3 374.21096 1119.61105 -0.27249 -0.00010197 -1.1959 -0.00044753 -1.4684 -0.0005495 374.2121827511515 59.551 0.84058 56.617 56.156 56.996 -2.9333 62 23 5 0 0 0 0.73814 1 11377 11377 4.5289 0.58447 1 3906400 28367 2490 18953 18960 27952 27952 0.056029490136324966 LRFVLKPA 8 Unmodified _LRFVLKPA_ 0 0 0 ENST00000601372.5_1_19:8935730-8942974:-|nuORF;ENST00000593891.1_1_19:8941870-8942911:-|nuORF;ENST00000596172.1_1_19:8935711-8942974:-|nuORF ENST00000601372.5_1_19:8935730-8942974:-|nuORF ENST00000601372.5_1_19:8935730-8942974:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.18060302734375 3 315.207767 942.601472 NaN NaN NaN NaN NaN NaN NaN 80.087 1 80.087 79.587 80.587 0 0 0 0 0.21486 1 15591 15591 1.6526 0 1 28368 11648 18954 18961 27953 27953 0.1278754879040207 LRFVLKPA 8 Unmodified _LRFVLKPA_ 0 0 0 ENST00000601372.5_1_19:8935730-8942974:-|nuORF;ENST00000593891.1_1_19:8941870-8942911:-|nuORF;ENST00000596172.1_1_19:8935711-8942974:-|nuORF ENST00000601372.5_1_19:8935730-8942974:-|nuORF ENST00000601372.5_1_19:8935730-8942974:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1952819824219 3 315.207767 942.601472 NaN NaN NaN NaN NaN NaN NaN 34.304 1 32.088 31.588 32.588 -2.2158 0 0 0 0.21486 1 6008 6008 1.6526 0 1 28369 11648 18954 18961 27954 27954 0.1278754879040207 LRFVLKPA 8 Unmodified _LRFVLKPA_ 0 0 0 ENST00000601372.5_1_19:8935730-8942974:-|nuORF;ENST00000593891.1_1_19:8941870-8942911:-|nuORF;ENST00000596172.1_1_19:8935711-8942974:-|nuORF ENST00000601372.5_1_19:8935730-8942974:-|nuORF ENST00000601372.5_1_19:8935730-8942974:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.206298828125 3 315.207767 942.601472 NaN NaN NaN NaN NaN NaN NaN 72.827 1 69.289 68.789 69.789 -3.5385 0 0 0 0.21486 1 13811 13811 1.6526 0 1 28370 11648 18954 18961 27955 27955 0.1278754879040207 LRFVLKPA 8 Unmodified _LRFVLKPA_ 0 0 0 ENST00000601372.5_1_19:8935730-8942974:-|nuORF;ENST00000593891.1_1_19:8941870-8942911:-|nuORF;ENST00000596172.1_1_19:8935711-8942974:-|nuORF ENST00000601372.5_1_19:8935730-8942974:-|nuORF ENST00000601372.5_1_19:8935730-8942974:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.20654296875 3 315.207767 942.601472 NaN NaN NaN NaN NaN NaN NaN 84.805 1 81.093 80.593 81.593 -3.7117 0 0 0 0.21486 1 16200 16200 1.6526 0 1 28371 11648 18954 18961 27956 27956 0.1278754879040207 LRFVLKPA 8 Unmodified _LRFVLKPA_ 0 0 0 ENST00000601372.5_1_19:8935730-8942974:-|nuORF;ENST00000593891.1_1_19:8941870-8942911:-|nuORF;ENST00000596172.1_1_19:8935711-8942974:-|nuORF ENST00000601372.5_1_19:8935730-8942974:-|nuORF ENST00000601372.5_1_19:8935730-8942974:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1994934082031 3 315.207767 942.601472 NaN NaN NaN NaN NaN NaN NaN 96.146 1 92.265 91.765 92.765 -3.881 0 0 0 0.21486 1 18454 18454 1.6526 0 1 28372 11648 18954 18961 27957 27957 0.1278754879040207 LRGALLPRPRR 11 Unmodified _LRGALLPRPRR_ 0 0 0 ENST00000262738.7_1_22:46932303-46932903:-|nuORF ENST00000262738.7_1_22:46932303-46932903:-|nuORF ENST00000262738.7_1_22:46932303-46932903:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 327.25762939453125 4 326.965103 1303.83131 0.19587 6.4044E-05 -2.9292 -0.00095773 -2.7333 -0.00089369 327.2146953899122 177.17 0.92078 172.29 171.99 172.92 -4.8739 41 25 2 0 0 0 0.96227 1 35316 35316 0.08335 0 1 5713100 28373 8316 18955 18962 27958 27958 0.1915435545604396 LRGALLPRPRR 11 Unmodified _LRGALLPRPRR_ 0 0 0 ENST00000262738.7_1_22:46932303-46932903:-|nuORF ENST00000262738.7_1_22:46932303-46932903:-|nuORF ENST00000262738.7_1_22:46932303-46932903:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 326.965103 1303.83131 -0.0087197 -2.851E-06 -2.4084 -0.00078747 -2.4171 -0.00079032 327.2148781072301 177.1 0.67255 172.31 172.03 172.71 -4.7898 -0.039009 -0.0010483 NaN 0.08335 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 4788500 28374 8316 18955 18962 0.1915435545604396 LRGALLPRPRR 11 Unmodified _LRGALLPRPRR_ 0 0 0 ENST00000262738.7_1_22:46932303-46932903:-|nuORF ENST00000262738.7_1_22:46932303-46932903:-|nuORF ENST00000262738.7_1_22:46932303-46932903:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 326.965103 1303.83131 -0.16642 -5.4415E-05 -0.31934 -0.00010441 -0.48577 -0.00015883 327.2155413287476 177.35 0.85919 172.44 172.02 172.88 -4.907 0.092558 0.0016839 NaN 0.08335 39 24 2 NaN NaN NaN NaN 0 NaN NaN 0 3790700 28375 8316 18955 18962 0.1915435545604396 LRGIVLPKLKH 11 Unmodified _LRGIVLPKLKH_ 0 0 0 REV__nc|ENSG00000179886|Q53EQ6-2|TIGD5 REV__nc|ENSG00000179886|Q53EQ6-2|TIGD5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.251220703125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 159.91 1 159.91 159.41 160.41 0 0 0 0 0.23698 1 32106 32106 0.08335 0.08335 1 + 28376 18670 18956 18963 27959 27959 0.21390489652821998 LRGLVVFFFF 10 Unmodified _LRGLVVFFFF_ 0 0 0 ENST00000475185.5_1_18:20877516-20877840:-|nuORF ENST00000475185.5_1_18:20877516-20877840:-|nuORF ENST00000475185.5_1_18:20877516-20877840:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7667846679688 2 622.863152 1243.71175 NaN NaN NaN NaN NaN NaN NaN 57.321 1 54.069 53.569 54.569 -3.2517 0 0 0 2.8426 1 10642 10642 0.26539 0.26401 1 28377 10274 18957 18964 27960 27960 0.09964349058782318 LRGYEKDV 8 Unmodified _LRGYEKDV_ 0 0 0 ENSG00000142621|ENST00000688493|FHAD1;ENST00000495195.5_1_1:15707786-15709690:+|nuORF;ENST00000477846.5_1_1:15707235-15714865:+|nuORF;nc|ENSG00000142621|B1AJZ9-4|FHAD1;nc|ENSG00000142621|B1AJZ9|FHAD1;nc|ENSG00000142621|B1AJZ9-3|FHAD1 ENSG00000142621|ENST00000688493|FHAD1 ENSG00000142621|ENST00000688493|FHAD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2644348144531 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.24 1 175.24 174.74 175.74 0 0 0 0 0.21486 1 36307 36307 7.9102 0.62092 1 28378 4433 18958 18965 27961 27961 0.023328834091330464 LRGYLKRYREN 11 Unmodified _LRGYLKRYREN_ 0 0 0 ENST00000549100.5_1_12:100631797-100646034:-|nuORF;ENST00000378244.6_1_12:100631797-100635442:-|nuORF ENST00000549100.5_1_12:100631797-100646034:-|nuORF ENST00000549100.5_1_12:100631797-100646034:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2655944824219 3 489.944153 1466.81063 NaN NaN NaN NaN NaN NaN NaN 147.13 1 142.45 141.95 142.95 -4.6868 0 0 0 0.22632 1 29187 29187 0.172 0 1 28379 11158 18959 18966 27962 27962 0.09589720285725889 LRHDLPEY 8 Unmodified _LRHDLPEY_ 0 0 0 nc|ENSG00000265817|O95073-2|FSBP;ENSG00000265817|ENST00000481490|FSBP nc|ENSG00000265817|O95073-2|FSBP nc|ENSG00000265817|O95073-2|FSBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.28076171875 2 521.769448 1041.52434 -0.30938 -0.00016142 0.16722 8.7249E-05 -0.14216 -7.4176E-05 521.769636222129 87.9 0.61516 84.107 83.87 84.485 -3.7926 23 16 2 0 0 0 0.77935 1 17251 17251 5.2307 0 1 2674000 28380 7979 18960 18967 27963 27963 0.005242857834218739 LRHHRLYR 8 Unmodified _LRHHRLYR_ 0 0 0 nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;OSBPL6|p.F898Lfs*31|1|0.36|ENSG00000079156|chr2:178394428-178394428|T/-|frameshift_variant;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;OSBPL6|p.P358Lfs*23|1|0.08|ENSG00000079156|chr2:178349305-178349305|C/-|frameshift_variant;OSBPL6|p.Y622Qfs*94|1|0.12|ENSG00000079156|chr2:178383264-178383265|-/TCAAG|frameshift_variant;nc|ENSG00000079156|Q9BZF3-6|OSBPL6 nc|ENSG00000079156|Q9BZF3-5|OSBPL6 nc|ENSG00000079156|Q9BZF3-5|OSBPL6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3391723632812 2 575.838865 1149.66318 -0.3245 -0.00018686 -0.79178 -0.00045594 -1.1163 -0.0006428 575.8384247770543 38.699 0.52287 36.15 35.873 36.396 -2.5491 24 14 2 0 0 0 0.97966 1 7224 7224 11.64 0.81637 1 1439200 28381 1591 18961 18968 27964 27964 0.09433293262259212 LRHKVAKK 8 Unmodified _LRHKVAKK_ 0 0 0 nc|ENSG00000211707|A0A0A6YYK4|TRBV7-1 nc|ENSG00000211707|A0A0A6YYK4|TRBV7-1 nc|ENSG00000211707|A0A0A6YYK4|TRBV7-1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25787353515625 2 490.329811 978.645068 0.1977 9.6939E-05 -3.7595 -0.0018434 -3.5618 -0.0017465 490.3301678930878 161.08 0.10757 161.08 160.99 161.1 0 4 2 2 0 0 0 0.89967 1 32336 32336 0.12286 0 1 1383800 28382 12575 18962 18969 27965 27965 0.15489158287550708 LRHLLKIML 9 Unmodified _LRHLLKIML_ 0 0 0 ENST00000418770.5_1_2:160567350-160568460:-|nuORF ENST00000418770.5_1_2:160567350-160568460:-|nuORF ENST00000418770.5_1_2:160567350-160568460:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 379.5813293457031 3 379.582728 1135.72636 NaN NaN NaN NaN NaN NaN NaN 88.216 1 84.424 83.924 84.924 -3.7926 0 0 0 0.19622 1 17254 17254 0.96228 0 1 28383 9645 18963 18970 27966 27966 0.16392097935272432 LRHYKVKQ 8 Unmodified _LRHYKVKQ_ 0 0 0 REV__ENSG00000167306|ENST00000285039|MYO5B REV__ENSG00000167306|ENST00000285039|MYO5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5534362792969 3 357.885576 1070.6349 -0.48904 -0.00017502 -0.57648 -0.00020631 -1.0655 -0.00038133 357.885300365715 57.392 0.58973 57.392 57.057 57.647 0 47 16 4 0 0 0 0.89687 1 10912 10912 3.2813 2.873 1 7300800 + 28384 17916 18964 18971 27967 27967 0.10240550562321005 LRIAIKVLDY 10 Unmodified _LRIAIKVLDY_ 0 0 0 ENSG00000151376|ENST00000524826|ME3 ENSG00000151376|ENST00000524826|ME3 ENSG00000151376|ENST00000524826|ME3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.27685546875 2 602.376623 1202.73869 NaN NaN NaN NaN NaN NaN NaN 42.63 1 39.911 39.411 40.411 -2.7191 0 0 0 0.22588 1 7978 7978 3.9444 0.66309 1 28385 4865 18965 18972 27968 27968 0.14543412879334028 LRIIKNNMF 9 Unmodified _LRIIKNNMF_ 0 0 0 REV__ENSG00000188997|ENST00000340067|KCTD21 REV__ENSG00000188997|ENST00000340067|KCTD21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.5519104003906 3 383.558471 1147.65358 NaN NaN NaN NaN NaN NaN NaN 35.92 1 33.643 33.143 34.143 -2.2766 0 0 0 0.19638 1 6327 6327 0.073264 0 1 + 28386 19183 18966 18973 27969 27969 0.08566344141854643 LRILCLAL 8 Unmodified _LRILCLAL_ 0 0 0 ENSG00000167104|ENST00000349552|BPIFB6 ENSG00000167104|ENST00000349552|BPIFB6 ENSG00000167104|ENST00000349552|BPIFB6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.11370849609375 3 305.533374 913.578294 -0.47251 -0.00014437 -0.93852 -0.00028675 -1.411 -0.00043112 305.53377134108734 178.82 0.2083 178.82 178.77 178.97 0 6 5 2 0 0 0 1.0282 1 37051 37051 0 0 1 56569 28387 5783 18967 18974 27970 27970 0.11804786681409496 LRILIMLR 8 Unmodified _LRILIMLR_ 0 0 0 REV__ENST00000588939.1_1_18:11906041-11906167:-|nuORF REV__ENST00000588939.1_1_18:11906041-11906167:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.23101806640625 3 343.231807 1026.67359 NaN NaN NaN NaN NaN NaN NaN 38.569 1 36.127 35.627 36.627 -2.4419 0 0 0 0.21486 1 6868 6868 0.40072 0 1 + 28388 23304 18968 18975 27971 27971 0.1613213987245672 LRILIMLR 8 Unmodified _LRILIMLR_ 0 0 0 REV__ENST00000588939.1_1_18:11906041-11906167:-|nuORF REV__ENST00000588939.1_1_18:11906041-11906167:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.23126220703125 3 343.231807 1026.67359 NaN NaN NaN NaN NaN NaN NaN 38.812 1 36.37 35.87 36.87 -2.4419 0 0 0 0.21486 1 6918 6918 0.40072 0 1 + 28389 23304 18968 18975 27972 27972 0.1613213987245672 LRIRQRWLWRF 11 Unmodified _LRIRQRWLWRF_ 0 0 0 REV__nc|ENSG00000152620|Q4G0N4-3|NADK2 REV__nc|ENSG00000152620|Q4G0N4-3|NADK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77978515625 3 543.991549 1628.95282 NaN NaN NaN NaN NaN NaN NaN 31.491 1 29.26 28.76 29.76 -2.2305 0 0 0 0.23698 1 5716 5716 0 0 1 + 28390 17116 18969 18976 27973 27973 0.1634997781857237 LRITFDYTL 9 Unmodified _LRITFDYTL_ 0 0 0 nc|ENSG00000224287|P0C860|MSL3B;ENST00000494268.1_1_X:11778342-11782058:+|nuORF;nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3;MSL3|p.P440Qfs*22|1|0.32|ENSG00000005302|chrX:11772188-11772188|C/-|frameshift_variant;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3 nc|ENSG00000224287|P0C860|MSL3B nc|ENSG00000224287|P0C860|MSL3B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2145080566406 3 381.213246 1140.61791 NaN NaN NaN NaN NaN NaN NaN 42.582 1 42.582 42.082 43.082 0 0 0 0 0.23508 1 7965 7965 7.1017 0 1 28391 12600 18970 18977 27974 27974 0.053225851658453394 LRIVGPHGGG 10 Unmodified _LRIVGPHGGG_ 0 0 0 REV__ENSG00000102096|ENST00000376509|PIM2 REV__ENSG00000102096|ENST00000376509|PIM2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7821044921875 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 17.05 1 15.778 15.278 16.278 -1.2722 0 0 0 0.22588 1 2489 2489 1.6526 0.85899 1 + 28392 14820 18971 18978 27975 27975 0.06343715602815791 LRIVLKHRKWK 11 Unmodified _LRIVLKHRKWK_ 0 0 0 ENST00000328709.7_1_2:99216911-99216989:-|nuORF ENST00000328709.7_1_2:99216911-99216989:-|nuORF ENST00000328709.7_1_2:99216911-99216989:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 738.82568359375 2 738.98553 1475.95651 NaN NaN NaN NaN NaN NaN NaN 168.92 1 168.92 168.42 169.42 0 0 0 0 0.22632 1 34639 34639 0.094841 0 1 28393 8756 18972 18979 27976 27976 0.23756647592426816 LRKEFFPFG 9 Unmodified _LRKEFFPFG_ 0 0 0 PABPC1|p.S315F|1|0.09|ENSG00000070756|chr8:100712390-100712390|G/A|missense_variant PABPC1|p.S315F|1|0.09|ENSG00000070756|chr8:100712390-100712390|G/A|missense_variant PABPC1|p.S315F|1|0.09|ENSG00000070756|chr8:100712390-100712390|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2104797363281 3 380.878198 1139.61277 -0.28986 -0.0001104 -0.56602 -0.00021558 -0.85587 -0.00032598 380.8780462734941 87.004 0.84106 83.277 82.872 83.713 -3.727 67 23 4 0 0 0 0.69394 1 17087 17087 6.6304 1.2277 1 8382800 28394 12746 18973 18980 27977 27977 0.04854326093891359 LRKGDKFVLK 10 Unmodified _LRKGDKFVLK_ 0 0 0 LMX1B|p.E155K|2|0.27|ENSG00000136944|chr9:126690972-126690972|G/A|missense_variant LMX1B|p.E155K|2|0.27|ENSG00000136944|chr9:126690972-126690972|G/A|missense_variant LMX1B|p.E155K|2|0.27|ENSG00000136944|chr9:126690972-126690972|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2990112304688 2 602.38224 1202.74993 NaN NaN NaN NaN NaN NaN NaN 170.88 1 166.01 165.51 166.51 -4.873 0 0 0 0.22588 1 33837 33837 4.897 0.141 1 28395 12080 18974 18981 27978 27978 0.1566623497344608 LRKGYTPLM 9 Unmodified _LRKGYTPLM_ 0 0 0 ENSG00000080166|ENST00000377028|DCT;nc|ENSG00000080166|P40126-2|DCT ENSG00000080166|ENST00000377028|DCT ENSG00000080166|ENST00000377028|DCT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2069091796875 3 360.207438 1077.60049 NaN NaN NaN NaN NaN NaN NaN 125.99 1 121.39 120.89 121.89 -4.5984 0 0 0 0.19634 1 24839 24839 0.029283 0 1 28396 1607 18975 18982 27979 27979 0.06478966359190963 LRKKASGR 8 Unmodified _LRKKASGR_ 0 0 0 ENST00000526661.5_1_11:836524-836704:+|nuORF ENST00000526661.5_1_11:836524-836704:+|nuORF ENST00000526661.5_1_11:836524-836704:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2264404296875 2 458.295968 914.577383 NaN NaN NaN NaN NaN NaN NaN 98.409 1 94.139 93.639 94.639 -4.2692 0 0 0 0.23899 1 18812 18812 1.3295 0 1 28397 10917 18976 18983 27980 27980 0.11667708356753792 LRKLSLATP 9 Unmodified _LRKLSLATP_ 0 0 0 tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1 tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1 tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.8838195800781 3 333.550082 997.628415 -0.73348 -0.00024465 0.62923 0.00020988 -0.10424 -3.477E-05 333.55030842179127 63.183 1.3306 63.183 62.312 63.642 0 60 37 3 0 0 0 0.6226 1 12088 12088 1.2148 1.1416 1 2496400 28398 26285 18977 18984 27981 27981 0.1295061261095043 LRKLSLATP 9 Unmodified _LRKLSLATP_ 0 0 0 tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1 tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1 tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 333.550082 997.628415 -0.27932 -9.3168E-05 0.2381 7.942E-05 -0.041218 -1.3748E-05 333.5500950058272 65.923 0.68398 62.876 62.543 63.227 -3.047 -0.076357 -2.5473E-05 NaN 1.2148 40 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3629300 28399 26285 18977 18984 0.1295061261095043 LRKLSLATP 9 Unmodified _LRKLSLATP_ 0 0 0 tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1 tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1 tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 333.550082 997.628415 -0.37504 -0.0001251 0.30899 0.00010306 -0.066054 -2.2032E-05 333.55021879474407 66.159 1.1824 62.876 62.028 63.211 -3.2832 -0.076087 4.546E-05 NaN 1.2148 52 33 3 NaN NaN NaN NaN 0 NaN NaN 0 4006800 28400 26285 18977 18984 0.1295061261095043 LRKPVRIKIH 10 Unmodified _LRKPVRIKIH_ 0 0 0 REV__nc|ENSG00000103423|Q96EY1-3|DNAJA3 REV__nc|ENSG00000103423|Q96EY1-3|DNAJA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7655639648438 2 630.424774 1258.83499 0.41177 0.00025959 3.5391 0.0022311 3.9509 0.0024907 630.9292661194087 163.67 0.19804 163.67 163.52 163.72 0 6 5 2 0 0 0 0.91149 1 33001 33001 3.5965 0 1 7279300 + 28401 14880 18978 18985 27982 27982 0.2159302522991311 LRKRKFYLR 9 Unmodified _LRKRKFYLR_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 640.4474487304688 2 640.409124 1278.80369 NaN NaN NaN NaN NaN NaN NaN 165.81 1 161.02 160.52 161.52 -4.7898 0 0 0 0.19626 1 33244 33244 0.073264 0 1 28402 8872 18979 18986 27983 27983 0.17544452195829763 LRLCRRLRRRC 11 Unmodified _LRLCRRLRRRC_ 0 0 0 REV__ENST00000545417.5_1_1:44173220-44201909:+|nuORF REV__ENST00000545417.5_1_1:44173220-44201909:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 501.0456237792969 3 500.969874 1499.88779 NaN NaN NaN NaN NaN NaN NaN 159.56 1 159.56 159.06 160.06 0 0 0 0 0.22632 1 32038 32038 0.50596 0.33396 1 + 28403 22888 18980 18987 27984 27984 0.15784336749425165 LRLDDCDFQ 9 Unmodified _LRLDDCDFQ_ 0 0 0 ENSG00000077984|ENST00000480798|CST7 ENSG00000077984|ENST00000480798|CST7 ENSG00000077984|ENST00000480798|CST7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2225646972656 3 375.506213 1123.49681 0.06412 2.4077E-05 1.2881 0.00048367 1.3522 0.00050775 375.50740261077806 105.92 0.8091 101.55 101.12 101.93 -4.3764 52 22 3 0 0 0 0.87265 1 20316 20316 3.5871 1.3043 1 1508700 28404 1566 18981 18988 27985 27985 -0.05999985539142472 LRLDVKKNP 9 Unmodified _LRLDVKKNP_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.0256042480469 3 361.560869 1081.66078 -0.29166 -0.00010545 0.35035 0.00012667 0.058684 2.1218E-05 361.56097599286676 46.534 1.2435 43.693 42.934 44.178 -2.8409 79 35 3 0 0 0 0.8799 1 8801 8801 2.4985 0 1 2407300 28405 3551 18982 18989 27986 27986 0.1232140001393418 LRLESIRAMD 10 Unmodified _LRLESIRAMD_ 0 0 0 REV__nc|ENSG00000145029|Q9BSH3-2|NICN1 REV__nc|ENSG00000145029|Q9BSH3-2|NICN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.273681640625 2 602.329347 1202.64414 NaN NaN NaN NaN NaN NaN NaN 161.44 1 156.64 156.14 157.14 -4.7952 0 0 0 0.22579 1 32106 32106 14.405 5.66 1 + 28406 16817 18983 18990 27987 27987 0.050925310656793954 LRLGLVAQVIW 11 Unmodified _LRLGLVAQVIW_ 0 0 0 ENST00000600284.5_1_19:50490096-50500767:-|nuORF ENST00000600284.5_1_19:50490096-50500767:-|nuORF ENST00000600284.5_1_19:50490096-50500767:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 634.3275146484375 2 634.39789 1266.78123 NaN NaN NaN NaN NaN NaN NaN 174.54 1 169.75 169.25 170.25 -4.7898 0 0 0 0.22632 1 35663 35663 0.172 0.14579 1 28407 11702 18984 18991 27988 27988 0.15850808007553496 LRLHLKRF 8 Unmodified _LRLHLKRF_ 0 0 0 ENSG00000136014|ENST00000258499|USP44;nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 ENSG00000136014|ENST00000258499|USP44;nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.8489990234375 2 541.85091 1081.68727 NaN NaN NaN NaN NaN NaN NaN 11.513 1 10.609 10.109 11.109 -0.90401 0 0 0 0.21486 1 1530 1530 0.69038 0 1 28408 3977;5559 18985 18992 27989 27989 0.1496913369592221 LRLIAIVVRV 10 Unmodified _LRLIAIVVRV_ 0 0 0 REV__nc|ENSG00000160299|O95613-2|PCNT REV__nc|ENSG00000160299|O95613-2|PCNT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3314819335938 2 576.402976 1150.7914 NaN NaN NaN NaN NaN NaN NaN 141.11 1 141.11 140.61 141.61 0 0 0 0 2.8426 1 28109 28109 0 0 1 + 28409 17414 18986 18993 27990 27990 0.2220341573274709 LRLIAIVVRV 10 Unmodified _LRLIAIVVRV_ 0 0 0 REV__nc|ENSG00000160299|O95613-2|PCNT REV__nc|ENSG00000160299|O95613-2|PCNT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3295288085938 2 576.402976 1150.7914 NaN NaN NaN NaN NaN NaN NaN 149.87 1 144.67 144.17 145.17 -5.1994 0 0 0 2.8426 1 29033 29033 0 0 1 + 28410 17414 18986 18993 27991 27991 0.2220341573274709 LRLIILLRI 9 Unmodified _LRLIILLRI_ 0 0 0 nc|ENSG00000274391|P56180-4|TPTE;TPTE|p.I462Yfs*2|1|0.16|ENSG00000274391|chr21:10602082-10602082|A/-|frameshift_variant;nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE;ENSG00000274391|ENST00000618007|TPTE nc|ENSG00000274391|P56180-4|TPTE nc|ENSG00000274391|P56180-4|TPTE MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 561.413330078125 2 561.907894 1121.80123 0.29119 0.00016362 -0.82145 -0.00046158 -0.53025 -0.00029795 562.4066134544339 140.28 0.24879 140.28 140.16 140.41 0 10 6 2 0 0 0 0.88442 1 27900 27900 0.52476 0 1 2127300 28411 8018 18987 18994 27992 27992 0.24520603738164937 LRLKAKIKKY 10 Unmodified _LRLKAKIKKY_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7607421875 2 630.929357 1259.84416 NaN NaN NaN NaN NaN NaN NaN 38.049 1 38.049 37.549 38.549 0 0 0 0 0.22588 1 7048 7048 1.6526 0 1 + 28412 14014 18988 18995 27993 27993 0.22463373795608277 LRLKAKIKKY 10 Unmodified _LRLKAKIKKY_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7660522460938 2 630.929357 1259.84416 NaN NaN NaN NaN NaN NaN NaN 162.54 1 162.54 162.04 163.04 0 0 0 0 2.8426 1 32683 32683 0.13989 0 1 + 28413 14014 18988 18995 27994 27994 0.22463373795608277 LRLKAKIKKY 10 Unmodified _LRLKAKIKKY_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7710571289062 2 630.929357 1259.84416 NaN NaN NaN NaN NaN NaN NaN 112.59 1 108.07 107.57 108.57 -4.5259 0 0 0 2.8426 1 21612 21612 0.043787 0 1 + 28414 14014 18988 18995 27995 27995 0.22463373795608277 LRLKPHKA 8 Unmodified _LRLKPHKA_ 0 0 0 KCNK3|p.G276Vfs*52|1|0.29|ENSG00000171303|chr2:26728206-26728206|G/-|frameshift_variant;ENSG00000171303|ENST00000302909|KCNK3 KCNK3|p.G276Vfs*52|1|0.29|ENSG00000171303|chr2:26728206-26728206|G/-|frameshift_variant KCNK3|p.G276Vfs*52|1|0.29|ENSG00000171303|chr2:26728206-26728206|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7823486328125 2 481.816536 961.618519 NaN NaN NaN NaN NaN NaN NaN 162.66 1 157.87 157.37 158.37 -4.7898 0 0 0 0.21486 1 32375 32375 9.3474 0.75416 1 28415 6135 18989 18996 27996 27996 0.1361746939621753 LRLKRVLLSY 10 Unmodified _LRLKRVLLSY_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7547607421875 2 630.911165 1259.80778 NaN NaN NaN NaN NaN NaN NaN 148.23 1 143.17 142.67 143.67 -5.0595 0 0 0 2.8426 1 28709 28709 0.043787 0 1 + + 28416 13532 18990 18997 27997 27997 0.18826496898918776 LRLLRLKL 8 Unmodified _LRLLRLKL_ 0 0 0 ENSG00000105329|ENST00000221930|TGFB1 ENSG00000105329|ENST00000221930|TGFB1 ENSG00000105329|ENST00000221930|TGFB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.5410461425781 3 342.249966 1023.72807 NaN NaN NaN NaN NaN NaN NaN 83.228 1 79.62 79.12 80.12 -3.6079 0 0 0 0.2396 1 16269 16269 0 0 1 28417 2297 18991 18998 27998 27998 0.21715475015537322 LRLLRLLRV 9 Unmodified _LRLLRLLRV_ 0 0 0 REV__KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant;REV__ENST00000452398.5_1_3:19388190-19491848:+|nuORF REV__KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3294067382812 2 576.408592 1150.80263 NaN NaN NaN NaN NaN NaN NaN 138.87 1 138.87 138.37 139.37 0 0 0 0 0.19635 1 27588 27588 0 0 1 + 28418 16274;18875 18992 18999 27999 27999 0.23326237826904617 LRLLRLLRV 9 Unmodified _LRLLRLLRV_ 0 0 0 REV__KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant;REV__ENST00000452398.5_1_3:19388190-19491848:+|nuORF REV__KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3199462890625 2 576.408592 1150.80263 NaN NaN NaN NaN NaN NaN NaN 163.15 1 158.36 157.86 158.86 -4.7898 0 0 0 0.19635 1 32508 32508 0 0 1 + 28419 16274;18875 18992 18999 28000 28000 0.23326237826904617 LRLLRRRPV 9 Unmodified _LRLLRRRPV_ 0 0 0 ENST00000353442.9_1_7:156685696-156685861:-|nuORF ENST00000353442.9_1_7:156685696-156685861:-|nuORF ENST00000353442.9_1_7:156685696-156685861:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2718505859375 2 589.901466 1177.78838 NaN NaN NaN NaN NaN NaN NaN 81.029 1 81.029 80.529 81.529 0 0 0 0 0.23508 1 15777 15777 2.0598 0.57785 1 28420 8936 18993 19000 28001 28001 0.20659585398607305 LRLLRRRPV 9 Unmodified _LRLLRRRPV_ 0 0 0 ENST00000353442.9_1_7:156685696-156685861:-|nuORF ENST00000353442.9_1_7:156685696-156685861:-|nuORF ENST00000353442.9_1_7:156685696-156685861:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2505493164062 2 589.901466 1177.78838 NaN NaN NaN NaN NaN NaN NaN 115.17 1 110.61 110.11 111.11 -4.555 0 0 0 0.23508 1 22109 22109 0.6015 0 1 28421 8936 18993 19000 28002 28002 0.20659585398607305 LRLNNFWQG 9 Unmodified _LRLNNFWQG_ 0 0 0 ENST00000581721.5_1_17:28811254-28811693:+|nuORF ENST00000581721.5_1_17:28811254-28811693:+|nuORF ENST00000581721.5_1_17:28811254-28811693:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.2059631347656 3 383.205085 1146.59343 NaN NaN NaN NaN NaN NaN NaN 105.53 1 101.43 100.93 101.93 -4.0913 0 0 0 0.23508 1 20299 20299 12.241 0 1 28422 11507 18994 19001 28003 28003 0.025993698029878942 LRLNVTVKQ 9 Unmodified _LRLNVTVKQ_ 0 0 0 EYS|p.F206Vfs*10|1|0.22|ENSG00000188107|chr6:65494795-65494796|-/C|frameshift_variant;EYS|p.K220Nfs*37|1|0.25|ENSG00000188107|chr6:65494751-65494751|T/-|frameshift_variant;nc|ENSG00000188107|Q5T1H1-2|EYS;nc|ENSG00000188107|Q5T1H1-4|EYS;EYS|p.N692Mfs*37|1|0.42|ENSG00000188107|chr6:65057676-65057676|T/-|frameshift_variant;EYS|p.C952Lfs*2|1|0.27|ENSG00000188107|chr6:64886834-64886835|-/A|frameshift_variant;EYS|p.N1413Tfs*15|1|0.21|ENSG00000188107|chr6:64591629-64591629|T/-|frameshift_variant;EYS|p.E1830Rfs*16|1|0.31|ENSG00000188107|chr6:64590379-64590380|-/T|frameshift_variant;EYS|p.P1875Lfs*4|1|0.23|ENSG00000188107|chr6:64590243-64590243|G/-|frameshift_variant;EYS|p.G2248Wfs*10|1|0.08|ENSG00000188107|chr6:63999167-63999168|-/A|frameshift_variant;EYS|p.F2463Rfs*16|1|0.05|ENSG00000188107|chr6:63806214-63806215|-/AAGACCT|frameshift_variant;ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS EYS|p.F206Vfs*10|1|0.22|ENSG00000188107|chr6:65494795-65494796|-/C|frameshift_variant EYS|p.F206Vfs*10|1|0.22|ENSG00000188107|chr6:65494795-65494796|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5611267089844 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 85.11 1 85.11 84.61 85.61 0 0 0 0 0.19636 1 16608 16608 2.4985 0.59211 1 28423 7150 18995 19002 28004 28004 0.1287340001395023 LRLSLLAPLWL 11 Unmodified _LRLSLLAPLWL_ 0 0 0 REV__ENST00000239165.8_1_17:46684735-46684792:-|nuORF REV__ENST00000239165.8_1_17:46684735-46684792:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.8922119140625 3 432.279703 1293.81728 NaN NaN NaN NaN NaN NaN NaN 129.03 1 129.03 128.53 129.53 0 0 0 0 0.23698 1 25486 25486 0.50596 0.34663 1 + 28424 20086 18996 19003 28005 28005 0.1821226518441108 LRLYWLYWQDW 11 Unmodified _LRLYWLYWQDW_ 0 0 0 REV__nc|ENSG00000160145|O60229-2|KALRN REV__nc|ENSG00000160145|O60229-2|KALRN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7869873046875 3 547.945271 1640.81398 NaN NaN NaN NaN NaN NaN NaN 71.824 1 68.514 68.014 69.014 -3.3107 0 0 0 0.22632 1 13992 13992 0.026206 0 1 + 28425 24115 18997 19004 28006 28006 0.019209703397564226 LRMEPAPG 8 Unmodified _LRMEPAPG_ 0 0 0 ENSG00000213638|ENST00000329478|ADAT3 ENSG00000213638|ENST00000329478|ADAT3 ENSG00000213638|ENST00000329478|ADAT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 435.7438659667969 2 435.728738 869.442923 0.086288 3.7598E-05 1.2181 0.00053074 1.3043 0.00056834 435.7291473439265 148.9 0.59309 143.74 143.36 143.96 -5.1557 28 16 2 0 0 0 0.87247 1 28816 28816 0.68139 0.054566 1 2893900 28426 7701 18998 19005 28007 28007 0.002978868198283635 LRMEPAPG 8 Unmodified _LRMEPAPG_ 0 0 0 ENSG00000213638|ENST00000329478|ADAT3 ENSG00000213638|ENST00000329478|ADAT3 ENSG00000213638|ENST00000329478|ADAT3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 435.728738 869.442923 -0.039777 -1.7332E-05 1.2987 0.00056588 1.2589 0.00054855 435.72917431617924 148.18 0.73761 143.47 143.23 143.97 -4.7095 -0.18161 3.2838E-05 NaN 0.68139 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2543500 28427 7701 18998 19005 0.002978868198283635 LRMEPAPG 8 Unmodified _LRMEPAPG_ 0 0 0 ENSG00000213638|ENST00000329478|ADAT3 ENSG00000213638|ENST00000329478|ADAT3 ENSG00000213638|ENST00000329478|ADAT3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 435.728738 869.442923 0.15181 6.6148E-05 1.2889 0.00056163 1.4408 0.00062778 435.7291919002728 148.8 0.55646 143.74 143.4 143.96 -5.0595 0.089782 2.4332E-05 NaN 0.68139 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2528100 28428 7701 18998 19005 0.002978868198283635 LRMYGDEREK 10 Unmodified _LRMYGDEREK_ 0 0 0 REV__HINFP|p.H384R|1|0.13|ENSG00000172273|chr11:119134095-119134095|A/G|missense_variant REV__HINFP|p.H384R|1|0.13|ENSG00000172273|chr11:119134095-119134095|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 432.9043273925781 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 35.281 1 35.281 34.781 35.781 0 0 0 0 0.22588 1 6473 6473 5.4027 1.8157 1 + 28429 23634 18999 19006 28008 28008 -0.006769608023205365 LRMYPLKI 8 Unmodified _LRMYPLKI_ 0 0 0 ENSG00000132681|ENST00000368081|ATP1A4;nc|ENSG00000132681|Q13733-2|ATP1A4 ENSG00000132681|ENST00000368081|ATP1A4 ENSG00000132681|ENST00000368081|ATP1A4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.2272644042969 3 345.212412 1032.61541 NaN NaN NaN NaN NaN NaN NaN 137.12 1 132.48 131.98 132.98 -4.6413 0 0 0 0.21486 1 27058 27058 6.7232 0 1 28430 3753 19000 19007 28009 28009 0.10040458227172167 LRNFGMGKR 9 Unmodified _LRNFGMGKR_ 0 0 0 nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;CYP2C8|p.F401Vfs*16|1|0.07|ENSG00000138115|chr10:95038987-95038988|-/GAGAGAAC|frameshift_variant;ENSG00000138115|ENST00000371270|CYP2C8;nc|ENSG00000138109|P11712-2|CYP2C9;CYP2C8|p.N236Mfs*13|1|0.32|ENSG00000138115|chr10:95058447-95058447|T/-|frameshift_variant;nc|ENSG00000197446|P24903-2|CYP2F1;ENSG00000165841|ENST00000371321|CYP2C19;ENSG00000138109|ENST00000260682|CYP2C9;ENSG00000108242|ENST00000285979|CYP2C18;nc|ENSG00000108242|P33260-2|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 nc|ENSG00000138115|P10632-2|CYP2C8;ENSG00000108242|ENST00000285979|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 ENSG00000108242|ENST00000285979|CYP2C18 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.0278625488281 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 70.888 1 67.638 67.138 68.138 -3.2492 0 0 0 0.23508 1 13800 13800 4.5289 0.58447 1 28431 2464;768;7367 19001 19008 28010 28010 0.050877336507710424 LRNFGMGKR 9 Unmodified _LRNFGMGKR_ 0 0 0 nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;CYP2C8|p.F401Vfs*16|1|0.07|ENSG00000138115|chr10:95038987-95038988|-/GAGAGAAC|frameshift_variant;ENSG00000138115|ENST00000371270|CYP2C8;nc|ENSG00000138109|P11712-2|CYP2C9;CYP2C8|p.N236Mfs*13|1|0.32|ENSG00000138115|chr10:95058447-95058447|T/-|frameshift_variant;nc|ENSG00000197446|P24903-2|CYP2F1;ENSG00000165841|ENST00000371321|CYP2C19;ENSG00000138109|ENST00000260682|CYP2C9;ENSG00000108242|ENST00000285979|CYP2C18;nc|ENSG00000108242|P33260-2|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 nc|ENSG00000138115|P10632-2|CYP2C8;ENSG00000108242|ENST00000285979|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 ENSG00000108242|ENST00000285979|CYP2C18 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017822265625 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 87.137 1 83.41 82.91 83.91 -3.727 0 0 0 0.23508 1 17035 17035 2.4985 0 1 28432 2464;768;7367 19001 19008 28011 28011 0.050877336507710424 LRNFGMGKR 9 Unmodified _LRNFGMGKR_ 0 0 0 nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;CYP2C8|p.F401Vfs*16|1|0.07|ENSG00000138115|chr10:95038987-95038988|-/GAGAGAAC|frameshift_variant;ENSG00000138115|ENST00000371270|CYP2C8;nc|ENSG00000138109|P11712-2|CYP2C9;CYP2C8|p.N236Mfs*13|1|0.32|ENSG00000138115|chr10:95058447-95058447|T/-|frameshift_variant;nc|ENSG00000197446|P24903-2|CYP2F1;ENSG00000165841|ENST00000371321|CYP2C19;ENSG00000138109|ENST00000260682|CYP2C9;ENSG00000108242|ENST00000285979|CYP2C18;nc|ENSG00000108242|P33260-2|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 nc|ENSG00000138115|P10632-2|CYP2C8;ENSG00000108242|ENST00000285979|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 ENSG00000108242|ENST00000285979|CYP2C18 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20135498046875 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 89.175 1 85.382 84.882 85.882 -3.7926 0 0 0 0.23508 1 17448 17448 7.609 3.6646 1 28433 2464;768;7367 19001 19008 28012 28012 0.050877336507710424 LRNFGMGKR 9 Unmodified _LRNFGMGKR_ 0 0 0 nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;CYP2C8|p.F401Vfs*16|1|0.07|ENSG00000138115|chr10:95038987-95038988|-/GAGAGAAC|frameshift_variant;ENSG00000138115|ENST00000371270|CYP2C8;nc|ENSG00000138109|P11712-2|CYP2C9;CYP2C8|p.N236Mfs*13|1|0.32|ENSG00000138115|chr10:95058447-95058447|T/-|frameshift_variant;nc|ENSG00000197446|P24903-2|CYP2F1;ENSG00000165841|ENST00000371321|CYP2C19;ENSG00000138109|ENST00000260682|CYP2C9;ENSG00000108242|ENST00000285979|CYP2C18;nc|ENSG00000108242|P33260-2|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 nc|ENSG00000138115|P10632-2|CYP2C8;ENSG00000108242|ENST00000285979|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 ENSG00000108242|ENST00000285979|CYP2C18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20172119140625 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 71.366 1 67.787 67.287 68.287 -3.5798 0 0 0 0.23508 1 13457 13457 7.609 1.4171 1 28434 2464;768;7367 19001 19008 28013 28013 0.050877336507710424 LRNFGMGKR 9 Unmodified _LRNFGMGKR_ 0 0 0 nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;CYP2C8|p.F401Vfs*16|1|0.07|ENSG00000138115|chr10:95038987-95038988|-/GAGAGAAC|frameshift_variant;ENSG00000138115|ENST00000371270|CYP2C8;nc|ENSG00000138109|P11712-2|CYP2C9;CYP2C8|p.N236Mfs*13|1|0.32|ENSG00000138115|chr10:95058447-95058447|T/-|frameshift_variant;nc|ENSG00000197446|P24903-2|CYP2F1;ENSG00000165841|ENST00000371321|CYP2C19;ENSG00000138109|ENST00000260682|CYP2C9;ENSG00000108242|ENST00000285979|CYP2C18;nc|ENSG00000108242|P33260-2|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 nc|ENSG00000138115|P10632-2|CYP2C8;ENSG00000108242|ENST00000285979|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 ENSG00000108242|ENST00000285979|CYP2C18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016906738281 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 89.435 1 85.39 84.89 85.89 -4.0443 0 0 0 0.23508 1 17039 17039 7.609 3.0801 1 28435 2464;768;7367 19001 19008 28014 28014 0.050877336507710424 LRNFGMGKR 9 Unmodified _LRNFGMGKR_ 0 0 0 nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;CYP2C8|p.F401Vfs*16|1|0.07|ENSG00000138115|chr10:95038987-95038988|-/GAGAGAAC|frameshift_variant;ENSG00000138115|ENST00000371270|CYP2C8;nc|ENSG00000138109|P11712-2|CYP2C9;CYP2C8|p.N236Mfs*13|1|0.32|ENSG00000138115|chr10:95058447-95058447|T/-|frameshift_variant;nc|ENSG00000197446|P24903-2|CYP2F1;ENSG00000165841|ENST00000371321|CYP2C19;ENSG00000138109|ENST00000260682|CYP2C9;ENSG00000108242|ENST00000285979|CYP2C18;nc|ENSG00000108242|P33260-2|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 nc|ENSG00000138115|P10632-2|CYP2C8;ENSG00000108242|ENST00000285979|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 ENSG00000108242|ENST00000285979|CYP2C18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015380859375 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 87.315 1 83.586 83.086 84.086 -3.7289 0 0 0 0.23508 1 16704 16704 4.897 1.31 1 28436 2464;768;7367 19001 19008 28015 28015 0.050877336507710424 LRNFGMGKR 9 Unmodified _LRNFGMGKR_ 0 0 0 nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;CYP2C8|p.F401Vfs*16|1|0.07|ENSG00000138115|chr10:95038987-95038988|-/GAGAGAAC|frameshift_variant;ENSG00000138115|ENST00000371270|CYP2C8;nc|ENSG00000138109|P11712-2|CYP2C9;CYP2C8|p.N236Mfs*13|1|0.32|ENSG00000138115|chr10:95058447-95058447|T/-|frameshift_variant;nc|ENSG00000197446|P24903-2|CYP2F1;ENSG00000165841|ENST00000371321|CYP2C19;ENSG00000138109|ENST00000260682|CYP2C9;ENSG00000108242|ENST00000285979|CYP2C18;nc|ENSG00000108242|P33260-2|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 nc|ENSG00000138115|P10632-2|CYP2C8;ENSG00000108242|ENST00000285979|CYP2C18;ENSG00000197446|ENST00000331105|CYP2F1 ENSG00000108242|ENST00000285979|CYP2C18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20166015625 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 89.062 1 85.312 84.812 85.812 -3.7501 0 0 0 0.23508 1 17050 17050 7.609 1.8771 1 28437 2464;768;7367 19001 19008 28016 28016 0.050877336507710424 LRNSAVSIC 9 Unmodified _LRNSAVSIC_ 0 0 0 REV__ENST00000509020.2_1_4:37870545-37871372:+|nuORF REV__ENST00000509020.2_1_4:37870545-37871372:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7733154296875 2 481.758027 961.5015 NaN NaN NaN NaN NaN NaN NaN 160.49 1 155.26 154.76 155.76 -5.2299 0 0 0 0.23277 1 31162 31162 13.906 1.3745 1 + 28438 22521 19002 19009 28017 28017 0.01920943394304686 LRNSKKKS 8 Unmodified _LRNSKKKS_ 0 0 0 REV__nc|ENSG00000078487|Q9H0M4-3|ZCWPW1 REV__nc|ENSG00000078487|Q9H0M4-3|ZCWPW1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77630615234375 2 480.801083 959.587613 -0.0080674 -3.8788E-06 0.32618 0.00015683 0.31811 0.00015295 480.8011229832304 155.13 0.94371 155.13 154.71 155.66 0 65 26 3 0 0 0 0.74818 1 31033 31033 7.2892 7.2892 1 23163000 + 28439 14380 19003 19010 28018 28018 0.10620271291327299 LRNSKKKS 8 Unmodified _LRNSKKKS_ 0 0 0 REV__nc|ENSG00000078487|Q9H0M4-3|ZCWPW1 REV__nc|ENSG00000078487|Q9H0M4-3|ZCWPW1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7708740234375 2 480.801083 959.587613 0.21238 0.00010211 0.084511 4.0633E-05 0.29689 0.00014275 480.80102169434616 160.34 0.95694 155.54 155.12 156.07 -4.7952 66 26 3 0 0 0 0.74818 1 31856 31856 7.2892 0.56607 1 20750000 + 28440 14380 19003 19010 28019 28019 0.10620271291327299 LRPAARSRA 9 Unmodified _LRPAARSRA_ 0 0 0 ENST00000587504.5_1_17:73835995-73839803:-|nuORF ENST00000587504.5_1_17:73835995-73839803:-|nuORF ENST00000587504.5_1_17:73835995-73839803:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 333.2259216308594 3 333.205308 996.594095 NaN NaN NaN NaN NaN NaN NaN 121.21 1 116.68 116.18 117.18 -4.5305 0 0 0 0.23508 1 23339 23339 2.4985 0 1 28441 11564 19004 19011 28020 28020 0.09566209242700552 LRPAPEPEA 9 Unmodified _LRPAPEPEA_ 0 0 0 ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D ENSG00000116604|ENST00000348159|MEF2D ENSG00000116604|ENST00000348159|MEF2D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26434326171875 2 490.263999 978.513445 0.39375 0.00019304 -0.41836 -0.00020511 -0.024611 -1.2066E-05 490.2638271320499 67.507 0.41609 64.01 63.822 64.238 -3.4965 21 11 2 0 0 0 0.46882 1 12649 12649 21.537 1.0834 1 2438700 28442 2936 19005 19012 28021 28021 0.023328834091330464 LRPDSLIFY 9 Unmodified _LRPDSLIFY_ 0 0 0 FAM110D|p.P79L|1|0.25|ENSG00000197245|chr1:26161527-26161527|C/T|missense_variant FAM110D|p.P79L|1|0.25|ENSG00000197245|chr1:26161527-26161527|C/T|missense_variant FAM110D|p.P79L|1|0.25|ENSG00000197245|chr1:26161527-26161527|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2083435058594 3 375.209725 1122.60735 NaN NaN NaN NaN NaN NaN NaN 51.661 1 51.661 51.161 52.161 0 0 0 0 0.23508 1 9807 9807 10.8 1.2555 1 28443 11792 19006 19013 28022 28022 0.05094602511439916 LRPEKVHL 8 Unmodified _LRPEKVHL_ 0 0 0 REV__nc|ENSG00000124006|O75147-4|OBSL1 REV__nc|ENSG00000124006|O75147-4|OBSL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 496.2925720214844 2 496.306001 990.597449 NaN NaN NaN NaN NaN NaN NaN 129.93 1 129.93 129.43 130.43 0 0 0 0 0.21486 1 25673 25673 5.2307 0 1 + 28444 15746 19007 19014 28023 28023 0.10177459296698999 LRPEWVMR 8 Unmodified _LRPEWVMR_ 0 0 0 ENST00000462790.7_1_19:19303039-19303273:-|nuORF ENST00000462790.7_1_19:19303039-19303273:-|nuORF ENST00000462790.7_1_19:19303039-19303273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7892456054688 2 543.797486 1085.58042 NaN NaN NaN NaN NaN NaN NaN 163.84 1 159.05 158.55 159.55 -4.7898 0 0 0 0.21486 1 32692 32692 7.9102 0.62092 1 28445 10091 19008 19015 28024 28024 0.04105215419235719 LRPFFEEE 8 Unmodified _LRPFFEEE_ 0 0 0 REV__ENST00000403681.6_2_12:66218024-66218900:+|nuORF REV__ENST00000403681.6_2_12:66218024-66218900:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 356.0548095703125 3 356.178313 1065.51311 -0.38871 -0.00013845 0.24253 8.6382E-05 -0.14618 -5.2068E-05 356.1782957388002 89.019 0.45838 89.019 88.86 89.318 0 21 12 2 0 0 0 1.0271 1 17378 17378 1.6526 0 1 1468800 + 28446 21371 19009 19016 28025 28025 -0.017025363107222802 LRPFLLRRLKK 11 Unmodified _LRPFLLRRLKK_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 720.656005859375 2 720.487905 1438.96126 NaN NaN NaN NaN NaN NaN NaN 177.83 1 177.83 177.33 178.33 0 0 0 0 0.22632 1 36837 36837 0.00056442 0 1 28447 1613 19010 19017 28026 28026 0.2593353173519972 LRPKNMERQQW 11 Unmodified _LRPKNMERQQW_ 0 0 0 REV__ENST00000426698.1_1_3:10050013-10050241:-|nuORF REV__ENST00000426698.1_1_3:10050013-10050241:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 496.2275085449219 3 495.929627 1484.76705 -0.13737 -6.8124E-05 -0.9371 -0.00046474 -1.0745 -0.00053286 495.9292351603326 67.106 0.358 67.106 66.904 67.262 0 12 9 2 0 0 0 0.89002 1 12966 12966 0.172 0 1 1063800 + 28448 21186 19011 19018 28027 28027 0.044057875169528415 LRPLWQGQEWR 11 Unmodified _LRPLWQGQEWR_ 0 0 0 REV__ENST00000605862.4_1_7:128255955-128262737:+|nuORF REV__ENST00000605862.4_1_7:128255955-128262737:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2707824707031 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 139.21 1 139.21 138.71 139.71 0 0 0 0 0.22632 1 27666 27666 0.026206 0 1 + 28449 23453 19012 19019 28028 28028 0.05834048739961872 LRPLWQGQEWR 11 Unmodified _LRPLWQGQEWR_ 0 0 0 REV__ENST00000605862.4_1_7:128255955-128262737:+|nuORF REV__ENST00000605862.4_1_7:128255955-128262737:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26300048828125 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 173.05 1 168.26 167.76 168.76 -4.7898 0 0 0 0.22632 1 35279 35279 0.026206 0 1 + 28450 23453 19012 19019 28029 28029 0.05834048739961872 LRPLWQGQEWR 11 Unmodified _LRPLWQGQEWR_ 0 0 0 REV__ENST00000605862.4_1_7:128255955-128262737:+|nuORF REV__ENST00000605862.4_1_7:128255955-128262737:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26580810546875 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 164.8 1 159.75 159.25 160.25 -5.0446 0 0 0 0.22632 1 32164 32164 0.03141 0 1 + 28451 23453 19012 19019 28030 28030 0.05834048739961872 LRPLWQGQEWR 11 Unmodified _LRPLWQGQEWR_ 0 0 0 REV__ENST00000605862.4_1_7:128255955-128262737:+|nuORF REV__ENST00000605862.4_1_7:128255955-128262737:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26416015625 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 164.68 1 159.61 159.11 160.11 -5.0648 0 0 0 0.22632 1 32129 32129 0.172 0.14579 1 + 28452 23453 19012 19019 28031 28031 0.05834048739961872 LRPPGTRRRWV 11 Unmodified _LRPPGTRRRWV_ 0 0 0 REV__SSC5D|p.A244Gfs*45|1|0.38|ENSG00000179954|chr19:55490908-55490909|-/G|frameshift_variant REV__SSC5D|p.A244Gfs*45|1|0.38|ENSG00000179954|chr19:55490908-55490909|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24951171875 3 465.2811 1392.82147 NaN NaN NaN NaN NaN NaN NaN 70.989 1 67.74 67.24 68.24 -3.2492 0 0 0 0.22632 1 13820 13820 1.4551 0.82762 1 + 28453 24737 19013 19020 28032 28032 0.14077167450659545 LRPRKKRKPR 10 Unmodified _LRPRKKRKPR_ 0 0 0 REV__INO80E|p.E161K|1|0.3|ENSG00000169592|chr16:30001498-30001498|G/A|missense_variant REV__INO80E|p.E161K|1|0.3|ENSG00000169592|chr16:30001498-30001498|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.4711608886719 4 334.479649 1333.88949 -0.50847 -0.00017007 -1.5111 -0.00050542 -2.0195 -0.0006755 334.47896132802185 71.762 1.2991 71.762 71.416 72.715 0 77 36 4 0 0 0 0.53283 1 13896 13896 0.69767 0 1 10325000 + 28454 23661 19014 19021 28033 28033 0.2359003710134857 LRPRRLLRYYY 11 Unmodified _LRPRRLLRYYY_ 0 0 0 REV__DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant REV__DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6946411132812 3 523.643927 1567.90995 NaN NaN NaN NaN NaN NaN NaN 80.75 1 77.193 76.693 77.693 -3.557 0 0 0 0.22632 1 15769 15769 0.026206 0.026206 1 + 28455 13633 19015 19022 28034 28034 0.14871162970507612 LRPRRLLRYYY 11 Unmodified _LRPRRLLRYYY_ 0 0 0 REV__DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant REV__DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6945190429688 3 523.643927 1567.90995 NaN NaN NaN NaN NaN NaN NaN 144.84 1 140.17 139.67 140.67 -4.6694 0 0 0 0.23698 1 28695 28695 1.3296 0.96297 1 + 28456 13633 19015 19022 28035 28035 0.14871162970507612 LRPRRLLRYYY 11 Unmodified _LRPRRLLRYYY_ 0 0 0 REV__DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant REV__DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6817016601562 3 523.643927 1567.90995 NaN NaN NaN NaN NaN NaN NaN 144.57 1 139.5 139 140 -5.0671 0 0 0 0.23698 1 27894 27894 0.094841 0 1 + 28457 13633 19015 19022 28036 28036 0.14871162970507612 LRPRRLLRYYY 11 Unmodified _LRPRRLLRYYY_ 0 0 0 REV__DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant REV__DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.69140625 3 523.643927 1567.90995 NaN NaN NaN NaN NaN NaN NaN 62.755 1 59.515 59.015 60.015 -3.2395 0 0 0 0.22632 1 11768 11768 0.026206 0 1 + 28458 13633 19015 19022 28037 28037 0.14871162970507612 LRPSRDSQQ 9 Unmodified _LRPSRDSQQ_ 0 0 0 ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7874145507812 2 543.786161 1085.55777 NaN NaN NaN NaN NaN NaN NaN 164.18 1 159.39 158.89 159.89 -4.7898 0 0 0 0.23508 1 32791 32791 6.7232 0.51738 1 28459 2161 19016 19023 28038 28038 0.018412875553167396 LRQDMWRQRLY 11 Unmodified _LRQDMWRQRLY_ 0 0 0 REV__ENSG00000094755|ENST00000265294|GABRP REV__ENSG00000094755|ENST00000265294|GABRP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2771606445312 3 522.277026 1563.80925 NaN NaN NaN NaN NaN NaN NaN 141.94 1 136.96 136.46 137.46 -4.9877 0 0 0 0.22632 1 27344 27344 3.0723 2.9612 1 + 28460 14596 19017 19024 28039 28039 0.04989762925333707 LRQDMWRQRLY 11 Unmodified _LRQDMWRQRLY_ 0 0 0 REV__ENSG00000094755|ENST00000265294|GABRP REV__ENSG00000094755|ENST00000265294|GABRP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26708984375 3 522.277026 1563.80925 NaN NaN NaN NaN NaN NaN NaN 142.08 1 137.05 136.55 137.55 -5.0261 0 0 0 0.22632 1 27376 27376 1.4551 0.8698 1 + 28461 14596 19017 19024 28040 28040 0.04989762925333707 LRQIPPSP 8 Unmodified _LRQIPPSP_ 0 0 0 ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1 ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74749755859375 2 454.271627 906.528701 0.28087 0.00012759 -0.086595 -3.9338E-05 0.19428 8.8254E-05 454.2715273943866 35.465 0.52522 33.189 32.895 33.42 -2.2766 35 14 3 0 0 0 0.96284 1 6276 6276 19.439 0 1 3175200 28462 124 19018 19025 28041 28041 0.07169794996980272 LRQLRNIQV 9 Unmodified _LRQLRNIQV_ 0 0 0 ENSG00000162739|ENST00000368057|SLAMF6;nc|ENSG00000162739|Q96DU3-2|SLAMF6 ENSG00000162739|ENST00000368057|SLAMF6 ENSG00000162739|ENST00000368057|SLAMF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21014404296875 3 380.571768 1138.69348 0.12625 4.8049E-05 -0.16413 -6.2462E-05 -0.037873 -1.4414E-05 380.5716966464147 83.585 0.71625 79.712 79.328 80.044 -3.8736 58 19 4 0 0 0 0.15889 1 15866 15866 22.736 0 1 12946000 28463 5363 19019 19026 28042 28042 0.12967607136783954 LRQLTESTF 9 Unmodified _LRQLTESTF_ 0 0 0 REV__nc|ENSG00000204624|Q9P2K9-2|DISP3 REV__nc|ENSG00000204624|Q9P2K9-2|DISP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7718505859375 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 116.76 1 112.28 111.78 112.78 -4.486 0 0 0 0.19669 1 23020 23020 0.40827 0 1 + 28464 19555 19020 19027 28043 28043 0.03372824126358864 LRQNQHLHRR 10 Unmodified _LRQNQHLHRR_ 0 0 0 REV__ARHGEF15|p.R820H|1|0.47|ENSG00000198844|chr17:8320926-8320926|G/A|missense_variant REV__ARHGEF15|p.R820H|1|0.47|ENSG00000198844|chr17:8320926-8320926|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7584533691406 3 453.260587 1356.75993 -0.118 -5.3484E-05 0.94027 0.00042619 0.82227 0.0003727 453.26091649425945 66.41 0.48813 63.363 62.984 63.472 -3.047 22 13 2 0 0 0 1.1344 1 12800 12800 0.69767 0 1 1256600 + 28465 13110 19021 19028 28044 28044 0.09582235751395274 LRQQEERKRLY 11 Unmodified _LRQQEERKRLY_ 0 0 0 RNF25|p.G250Efs*29|4|0.29|ENSG00000163481|chr2:218664791-218664791|C/-|frameshift_variant;ENSG00000163481|ENST00000295704|RNF25 RNF25|p.G250Efs*29|4|0.29|ENSG00000163481|chr2:218664791-218664791|C/-|frameshift_variant RNF25|p.G250Efs*29|4|0.29|ENSG00000163481|chr2:218664791-218664791|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 760.203857421875 2 759.928606 1517.84266 NaN NaN NaN NaN NaN NaN NaN 168.14 1 163.19 162.69 163.69 -4.948 0 0 0 0.22632 1 33133 33133 7.0341 3.9618 1 28466 5431 19022 19029 28045 28045 0.10445087968878397 LRQRFRRFWTC 11 Unmodified _LRQRFRRFWTC_ 0 0 0 REV__ENST00000243918.9_1_20:43991669-43991846:+|nuORF REV__ENST00000243918.9_1_20:43991669-43991846:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6779174804688 3 523.617494 1567.83065 NaN NaN NaN NaN NaN NaN NaN 163.99 1 158.93 158.43 159.43 -5.0648 0 0 0 0.23698 1 31947 31947 1.3296 0 1 + 28467 20096 19023 19030 28046 28046 0.06945192744683482 LRQRKTEFFKS 11 Unmodified _LRQRKTEFFKS_ 0 0 0 ATAD5|p.K671Nfs*36|1|0.37|ENSG00000176208|chr17:30837246-30837246|A/-|frameshift_variant;ENST00000585133.1_1_17:29162236-29196669:+|nuORF;ATAD5|p.F1193Lfs*6|2|0.35|ENSG00000176208|chr17:30869612-30869612|T/-|frameshift_variant;nc|ENSG00000176208|Q96QE3-2|ATAD5;ATAD5|p.S1470Ffs*4|1|0.42|ENSG00000176208|chr17:30892750-30892751|-/T|frameshift_variant;ATAD5|p.S1470Pfs*10|1|0.29|ENSG00000176208|chr17:30892751-30892751|T/-|frameshift_variant;ENSG00000176208|ENST00000321990|ATAD5 ATAD5|p.K671Nfs*36|1|0.37|ENSG00000176208|chr17:30837246-30837246|A/-|frameshift_variant ATAD5|p.K671Nfs*36|1|0.37|ENSG00000176208|chr17:30837246-30837246|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24554443359375 3 480.60877 1438.80448 0.14922 7.1714E-05 -0.28934 -0.00013906 -0.14012 -6.7345E-05 480.6086176164883 98.672 0.69119 98.672 98.333 99.024 0 39 19 3 0 0 0 0.66234 1 19294 19294 0.50596 0.50539 1 3334200 28468 246 19024 19031 28047 28047 0.10263202054215981 LRQVDVTSF 9 Unmodified _LRQVDVTSF_ 0 0 0 nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN nc|ENSG00000188157|O00468-2|AGRN nc|ENSG00000188157|O00468-2|AGRN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2754516601562 2 532.790381 1063.56621 0.35129 0.00018717 0.30391 0.00016192 0.6552 0.00034908 532.7902519482249 118.91 0.71004 114.41 114.15 114.86 -4.502 26 19 2 0 0 0 0.09885 1 23475 23475 56.177 2.3442 1 2151100 28469 7153 19025 19032 28048 28048 0.036968414719467546 LRREGQECGVY 11 Unmodified _LRREGQECGVY_ 0 0 0 ENSG00000167779|ENST00000301464|IGFBP6 ENSG00000167779|ENST00000301464|IGFBP6 ENSG00000167779|ENST00000301464|IGFBP6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2162170410156 3 437.215433 1308.62447 NaN NaN NaN NaN NaN NaN NaN 114.07 1 109.52 109.02 110.02 -4.555 0 0 0 0.23001 1 21899 21899 8.2864 3.3894 1 28470 5850 19026 19033 28049 28049 -0.01749844945084078 LRRFAKQC 8 Unmodified _LRRFAKQC_ 0 0 0 REV__ZSCAN5B|p.Q478R|1|0.22|ENSG00000197213|chr19:56189882-56189882|T/C|missense_variant REV__ZSCAN5B|p.Q478R|1|0.22|ENSG00000197213|chr19:56189882-56189882|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.21484375 3 341.195644 1020.5651 NaN NaN NaN NaN NaN NaN NaN 96.313 1 92.263 91.763 92.763 -4.0496 0 0 0 0.21486 1 18885 18885 1.6526 0 1 + 28471 25599 19027 19034 28050 28050 0.0556434862204469 LRRFWGFP 8 Unmodified _LRRFWGFP_ 0 0 0 REV__ENST00000567216.5_1_16:587439-587742:+|nuORF REV__ENST00000567216.5_1_16:587439-587742:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2014465332031 3 360.203016 1077.58722 NaN NaN NaN NaN NaN NaN NaN 115.55 1 111.24 110.74 111.74 -4.3136 0 0 0 0.21486 1 22245 22245 1.8442 0.19162 1 + 28472 23127 19028 19035 28051 28051 0.05152896362142201 LRRILKKQP 9 Unmodified _LRRILKKQP_ 0 0 0 nc|ENSG00000145375|Q8NB90-3|AFG2A;nc|ENSG00000145375|Q8NB90-2|AFG2A;ENST00000422835.2_1_4:123844270-124023368:+|nuORF;ENSG00000145375|ENST00000274008|SPATA5 nc|ENSG00000145375|Q8NB90-3|AFG2A nc|ENSG00000145375|Q8NB90-3|AFG2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3272705078125 2 576.3904 1150.76625 0.2931 0.00016894 3.6165 0.0020845 3.9096 0.0022534 576.3939549205195 128.45 0.17758 128.45 128.39 128.56 0 7 4 2 0 0 0 0.65257 1 25387 25387 0 0 1 2877600 28473 4605 19029 19036 28052 28052 0.19689360930215116 LRRKKRER 8 Unmodified _LRRKKRER_ 0 0 0 ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2186279296875 3 381.25114 1140.73159 NaN NaN NaN NaN NaN NaN NaN 55.7 1 52.816 52.316 53.316 -2.8837 0 0 0 0.21486 1 10663 10663 3.5965 0 1 28474 3491 19030 19037 28053 28053 0.16685537842113263 LRRKKRKWSIL 11 Unmodified _LRRKKRKWSIL_ 0 0 0 REV__ENST00000234296.6_1_2:201776004-201776058:-|nuORF REV__ENST00000234296.6_1_2:201776004-201776058:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.394775390625 2 742.488437 1482.96232 NaN NaN NaN NaN NaN NaN NaN 166.5 1 161.52 161.02 162.02 -4.9811 0 0 0 0.22632 1 32644 32644 0 0 1 + 28475 20075 19031 19038 28054 28054 0.24015746104123536 LRRKLKRHP 9 Unmodified _LRRKLKRHP_ 0 0 0 chr12:65951415-65963245|431|16.75|0.63|4.73|+|1|HMGA2,HMGA2|1 chr12:65951415-65963245|431|16.75|0.63|4.73|+|1|HMGA2,HMGA2|1 chr12:65951415-65963245|431|16.75|0.63|4.73|+|1|HMGA2,HMGA2|1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.296142578125 2 602.39909 1202.78363 NaN NaN NaN NaN NaN NaN NaN 160.91 1 156.11 155.61 156.61 -4.7952 0 0 0 0.23508 1 31998 31998 2.0598 0 1 28476 537 19032 19039 28055 28055 0.19034701255873188 LRRKQRRRERW 11 Unmodified _LRRKQRRRERW_ 0 0 0 RNF180|p.Q395Tfs*5|1|0.05|ENSG00000164197|chr5:64214507-64214508|-/G|frameshift_variant;RNF180|p.M409Sfs*7|1|0.11|ENSG00000164197|chr5:64217393-64217394|-/TCATACA|frameshift_variant;nc|ENSG00000164197|Q86T96-2|RNF180;ENSG00000164197|ENST00000389100|RNF180 RNF180|p.Q395Tfs*5|1|0.05|ENSG00000164197|chr5:64214507-64214508|-/G|frameshift_variant RNF180|p.Q395Tfs*5|1|0.05|ENSG00000164197|chr5:64214507-64214508|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7769775390625 3 547.332857 1638.97674 NaN NaN NaN NaN NaN NaN NaN 80.435 1 80.435 79.935 80.935 0 0 0 0 0.22632 1 15661 15661 0.026206 0.026206 1 28477 5524 19033 19040 28056 28056 0.18281211304952194 LRRKRRRMFRR 11 Unmodified _LRRKRRRMFRR_ 0 0 0 REV__ENST00000391975.5_1_2:242194961-242195633:-|nuORF REV__ENST00000391975.5_1_2:242194961-242195633:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7771606445312 3 544.342699 1630.00627 0.33105 0.00018021 -2.9296 -0.0015947 -2.5986 -0.0014145 544.6769099006802 124.92 0.11053 124.92 124.83 124.94 0 4 2 2 0 0 0 0.89136 1 24633 24633 0 0 1 711530 + 28478 21208 19034 19041 28057 28057 0.216464520494128 LRRLFVFK 8 Unmodified _LRRLFVFK_ 0 0 0 nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5;nc|ENSG00000084693|Q8NDL9-3|AGBL5;ENST00000477136.5_1_2:27275826-27278122:+|nuORF;ENST00000489683.5_1_2:27275826-27279072:+|nuORF nc|ENSG00000084693|Q8NDL9-2|AGBL5 nc|ENSG00000084693|Q8NDL9-2|AGBL5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 539.8468627929688 2 539.847836 1077.68112 NaN NaN NaN NaN NaN NaN NaN 171.03 1 166.16 165.66 166.66 -4.873 0 0 0 0.23782 1 33879 33879 0.12286 0.049601 1 28479 94 19035 19042 28058 28058 0.14538615464425675 LRRLQRRRTEL 11 Unmodified _LRRLQRRRTEL_ 0 0 0 ENSG00000118898|ENST00000345988|PPL;PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 499.5827331542969 3 499.64633 1495.91716 NaN NaN NaN NaN NaN NaN NaN 162.03 1 162.03 161.53 162.53 0 0 0 0 0.23698 1 32553 32553 1.3296 0.21989 1 28480 3052 19036 19043 28059 28059 0.1890389557090657 LRRLWVGW 8 Unmodified _LRRLWVGW_ 0 0 0 ENST00000381418.8_2_8:21972362-21972542:-|nuORF ENST00000381418.8_2_8:21972362-21972542:-|nuORF ENST00000381418.8_2_8:21972362-21972542:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.775146484375 2 543.321986 1084.62942 0.34367 0.00018672 1.4654 0.0007962 1.8091 0.00098293 543.3229583767769 159.8 0.69373 159.8 159.44 160.14 0 30 19 2 0 0 0 8448 1 32117 32117 0.68139 0 1 2818800 28481 9328 19037 19044 28060 28060 0.09048871770505684 LRRQRRLVRSQ 11 Unmodified _LRRQRRLVRSQ_ 0 0 0 HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26373291015625 3 489.974558 1466.90185 NaN NaN NaN NaN NaN NaN NaN 161.42 1 156.23 155.73 156.73 -5.1908 0 0 0 0.22632 1 31349 31349 0 0 1 28482 1827 19038 19045 28061 28061 0.18707028773724232 LRRRPRWLWRQ 11 Unmodified _LRRRPRWLWRQ_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2689208984375 3 541.658681 1621.95422 0.2526 0.00013682 -3.558 -0.0019272 -3.3054 -0.0017904 541.9897873644896 129.67 0.18146 124.93 124.78 124.96 -4.7408 6 4 2 0 0 0 0.89122 1 24951 24951 0.50596 0.33396 1 696270 28483 25816 19039 19046 28062 28062 0.16811611907337465 LRRRRPKLKKL 11 Unmodified _LRRRRPKLKKL_ 0 0 0 ENSG00000136982|ENST00000313655|DSCC1 ENSG00000136982|ENST00000313655|DSCC1 ENSG00000136982|ENST00000313655|DSCC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 732.457275390625 2 732.509703 1463.00485 NaN NaN NaN NaN NaN NaN NaN 169.25 1 164.46 163.96 164.96 -4.7898 0 0 0 0.23698 1 34275 34275 0 0 1 28484 4058 19040 19047 28063 28063 0.29187141232318936 LRRRRRVHRYE 11 Unmodified _LRRRRRVHRYE_ 0 0 0 MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant;ENSG00000112996|ENST00000507110|MRPS30 MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2702026367188 3 532.985457 1595.93454 0.097123 5.1765E-05 1.3211 0.00070415 1.4183 0.00075591 532.9862818908617 146.81 0.13708 146.81 146.7 146.84 0 5 3 2 0 0 0 0.66313 1 29353 29353 0 0 1 1407200 28485 2721 19041 19048 28064 28064 0.16041235896591388 LRRRRRVHRYE 11 Unmodified _LRRRRRVHRYE_ 0 0 0 MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant;ENSG00000112996|ENST00000507110|MRPS30 MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2689208984375 3 532.985457 1595.93454 NaN NaN NaN NaN NaN NaN NaN 31.284 1 29.258 28.758 29.758 -2.0264 0 0 0 0.22632 1 5396 5396 0.094841 0.094841 1 28486 2721 19041 19048 28065 28065 0.16041235896591388 LRRRSWERRWK 11 Unmodified _LRRRSWERRWK_ 0 0 0 ENST00000573267.1_3_16:74729599-74734630:-|nuORF ENST00000573267.1_3_16:74729599-74734630:-|nuORF ENST00000573267.1_3_16:74729599-74734630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7818603515625 3 543.650075 1627.92839 NaN NaN NaN NaN NaN NaN NaN 162.34 1 162.34 161.84 162.84 0 0 0 0 0.23698 1 32635 32635 0.40827 0.041592 1 28487 11435 19042 19049 28066 28066 0.13954717665023963 LRRRSWERRWK 11 Unmodified _LRRRSWERRWK_ 0 0 0 ENST00000573267.1_3_16:74729599-74734630:-|nuORF ENST00000573267.1_3_16:74729599-74734630:-|nuORF ENST00000573267.1_3_16:74729599-74734630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.772705078125 3 543.650075 1627.92839 NaN NaN NaN NaN NaN NaN NaN 162.38 1 162.38 161.88 162.88 0 0 0 0 0.23698 1 32644 32644 0.36667 0.27183 1 28488 11435 19042 19049 28067 28067 0.13954717665023963 LRRRSWERRWK 11 Unmodified _LRRRSWERRWK_ 0 0 0 ENST00000573267.1_3_16:74729599-74734630:-|nuORF ENST00000573267.1_3_16:74729599-74734630:-|nuORF ENST00000573267.1_3_16:74729599-74734630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79248046875 3 543.650075 1627.92839 NaN NaN NaN NaN NaN NaN NaN 156.51 1 151.23 150.73 151.73 -5.2854 0 0 0 0.23698 1 30363 30363 0.094841 0 1 28489 11435 19042 19049 28068 28068 0.13954717665023963 LRRRWCRRRFR 11 Unmodified _LRRRWCRRRFR_ 0 0 0 REV__ENSG00000249715|ENST00000624922|FER1L5 REV__ENSG00000249715|ENST00000624922|FER1L5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.99920654296875 5 332.99914 1659.95932 -0.32086 -0.00010684 -3.5942 -0.0011968 -3.915 -0.0013037 333.19789947196807 46.981 0.72614 44.14 43.693 44.419 -2.8409 34 20 2 0 0 0 0.82733 2 8854 8854;8906 0 0 1 1157300 + 28490 19822 19043 19050 28069;28070 28069 0.15573592498253674 LRRRWCRRRFR 11 Unmodified _LRRRWCRRRFR_ 0 0 0 REV__ENSG00000249715|ENST00000624922|FER1L5 REV__ENSG00000249715|ENST00000624922|FER1L5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.531982421875 5 332.99914 1659.95932 -0.32086 -0.00010684 -3.5942 -0.0011968 -3.915 -0.0013037 333.19789947196807 46.981 0.72614 44.14 43.693 44.419 -2.8409 34 20 2 0 0 0 0.89134 1 8809 8809 0.094841 0.087559 1 1157300 + 28491 19822 19043 19050 28071 28071 0.15573592498253674 LRRRWCRRRFR 11 Unmodified _LRRRWCRRRFR_ 0 0 0 REV__ENSG00000249715|ENST00000624922|FER1L5 REV__ENSG00000249715|ENST00000624922|FER1L5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.01068115234375 5 332.99914 1659.95932 -0.03647 -1.2145E-05 -3.2641 -0.0010869 -3.3005 -0.0010991 333.197815556755 41.226 0.62761 38.687 38.313 38.94 -2.5398 24 17 2 0 0 0 0.82733 1 7367 7367 0 0 1 631100 + 28492 19822 19043 19050 28072 28072 0.15573592498253674 LRRRWCRRRFR 11 Unmodified _LRRRWCRRRFR_ 0 0 0 REV__ENSG00000249715|ENST00000624922|FER1L5 REV__ENSG00000249715|ENST00000624922|FER1L5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 5 332.99914 1659.95932 -0.00045081 -1.5012E-07 -3.8553 -0.0012838 -3.8557 -0.0012839 333.1977060844327 46.959 0.9355 44.017 43.338 44.273 -2.9421 -0.061851 -0.00027546 NaN 0.094841 39 26 2 NaN NaN NaN NaN 0 NaN NaN 0 928260 + 28493 19822 19043 19050 0.15573592498253674 LRRRWRRRRW 10 Unmodified _LRRRWRRRRW_ 0 0 0 REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.274658203125 3 532.994287 1595.96103 0.51823 0.00027621 0.69761 0.00037182 1.2158 0.00064803 533.3271705952914 162.7 0.13144 157.51 157.4 157.53 -5.1878 5 3 2 0 0 0 0.91149 1 31576 31576 0.15932 0.01943 1 4349700 + 28494 23389 19044 19051 28073 28073 0.18688969578533943 LRRRWRRRRW 10 Unmodified _LRRRWRRRRW_ 0 0 0 REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 532.994287 1595.96103 0.58377 0.00031115 -2.4729 -0.001318 -1.8891 -0.0010069 532.9919315242048 162.45 0.10165 157.3 157.23 157.33 -5.1438 -0.10436 -0.0024609 NaN 0.15932 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 2595500 + 28495 23389 19044 19051 0.18688969578533943 LRRRWRRRRWG 11 Unmodified _LRRRWRRRRWG_ 0 0 0 REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 552.0011596679688 3 552.001442 1652.9825 NaN NaN NaN NaN NaN NaN NaN 177.18 1 172.39 171.89 172.89 -4.7898 0 0 0 0.22632 1 36239 36239 0 0 1 + 28496 23389 19045 19052 28074 28074 0.18212354607248926 LRRSHTPT 8 Unmodified _LRRSHTPT_ 0 0 0 ENST00000507117.1_1_4:66536337-66563678:+|nuORF;ENST00000514260.1_1_4:66536292-66558856:+|nuORF ENST00000507117.1_1_4:66536337-66563678:+|nuORF ENST00000507117.1_1_4:66536337-66563678:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.24267578125 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 128.61 1 128.61 128.11 129.11 0 0 0 0 0.21486 1 25401 25401 0.40072 0 1 28497 10691 19046 19053 28075 28075 0.051305275974073083 LRRSYKTA 8 Unmodified _LRRSYKTA_ 0 0 0 REV__nc|ENSG00000242802|O43299-2|AP5Z1 REV__nc|ENSG00000242802|O43299-2|AP5Z1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.197265625 3 332.197931 993.571963 NaN NaN NaN NaN NaN NaN NaN 64.894 1 61.847 61.347 62.347 -3.047 0 0 0 0.21486 1 12552 12552 3.5965 0 1 + 28498 13078 19047 19054 28076 28076 0.07491984774264893 LRRWFDELLKE 11 Unmodified _LRRWFDELLKE_ 0 0 0 REV__RGL3|p.L196Wfs*60|1|0.18|ENSG00000205517|chr19:11415987-11415987|A/-|frameshift_variant REV__RGL3|p.L196Wfs*60|1|0.18|ENSG00000205517|chr19:11415987-11415987|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 502.2462158203125 3 502.280542 1503.8198 NaN NaN NaN NaN NaN NaN NaN 139.16 1 139.16 138.66 139.66 0 0 0 0 0.22632 1 27654 27654 0.026206 0 1 + 28499 24560 19048 19055 28077 28077 0.08804068851418378 LRRWRRLQRRF 11 Unmodified _LRRWRRLQRRF_ 0 0 0 REV__ENST00000403729.6_1_4:80993792-80994179:-|nuORF REV__ENST00000403729.6_1_4:80993792-80994179:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7750854492188 3 548.337831 1641.99166 0.32567 0.00017858 3.9198 0.0021494 4.2455 0.002328 548.6751896062311 127.07 0.18016 127.07 126.99 127.17 0 6 4 2 0 0 0 0.89134 1 25098 25098 0 0 1 1555000 + 28500 21372 19049 19056 28078 28078 0.19634703172937407 LRSEDEADYY 10 Unmodified _LRSEDEADYY_ 0 0 0 nc|ENSG00000211648|P01700|IGLV1-47 nc|ENSG00000211648|P01700|IGLV1-47 nc|ENSG00000211648|P01700|IGLV1-47 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.77294921875 2 630.772582 1259.53061 0.74492 0.00046987 -0.022343 -1.4094E-05 0.72257 0.00045578 630.7725522947426 52.899 0.5162 50.015 49.625 50.141 -2.8837 21 14 2 0 0 0 0.67319 1 10085 10085 13.906 0 1 1765700 28501 12571 19050 19057 28079 28079 -0.08877285566359205 LRSEDEADYY 10 Unmodified _LRSEDEADYY_ 0 0 0 nc|ENSG00000211648|P01700|IGLV1-47 nc|ENSG00000211648|P01700|IGLV1-47 nc|ENSG00000211648|P01700|IGLV1-47 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7514038085938 2 630.772582 1259.53061 0.28737 0.00018127 0.4489 0.00028315 0.73627 0.00046442 630.7729628618295 52.956 0.4896 49.868 49.654 50.144 -3.0876 24 13 2 0 0 0 0.67319 1 9771 9771 13.906 0.86358 1 1290100 28502 12571 19050 19057 28080 28080 -0.08877285566359205 LRSEDEADYY 10 Unmodified _LRSEDEADYY_ 0 0 0 nc|ENSG00000211648|P01700|IGLV1-47 nc|ENSG00000211648|P01700|IGLV1-47 nc|ENSG00000211648|P01700|IGLV1-47 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.771240234375 2 630.772582 1259.53061 0.18993 0.00011981 0.41624 0.00026255 0.60618 0.00038236 630.7727657762223 53.049 0.48371 49.954 49.656 50.139 -3.0954 23 13 2 0 0 0 0.68961 2 9767 9767;9813 12.241 0.74595 1 904570 28503 12571 19050 19057 28081;28082 28081 -0.08877285566359205 LRSFRLLRVFK 11 Unmodified _LRSFRLLRVFK_ 0 0 0 ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000136531|Q99250-2|SCN2A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;ENSG00000144285|ENST00000674923|SCN1A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000144285|P35498-2|SCN1A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;nc|ENSG00000169432|Q15858-3|SCN9A;SCN9A|p.T1946Nfs*14|1|0.31|ENSG00000169432|chr2:166198802-166198803|-/T|frameshift_variant;nc|ENSG00000196876|Q9UQD0-5|SCN8A;SCN9A|p.V1720Sfs*8|1|0.13|ENSG00000169432|chr2:166199481-166199482|-/T|frameshift_variant;SCN4A|p.D1309Tfs*4|1|0.19|ENSG00000007314|chr17:63943842-63943842|C/-|frameshift_variant;nc|ENSG00000196876|Q9UQD0-4|SCN8A;SCN1A|p.N1126Kfs*8|1|0.17|ENSG00000144285|chr2:166036099-166036100|-/T|frameshift_variant;SCN4A|p.E974Rfs*5|1|0.4|ENSG00000007314|chr17:63949462-63949463|-/G|frameshift_variant;SCN1A|p.G913Wfs*2|1|0.25|ENSG00000144285|chr2:166037985-166037986|-/A|frameshift_variant;SCN10A|p.E906Rfs*2|1|0.13|ENSG00000185313|chr3:38726977-38726977|C/-|frameshift_variant;SCN5A|p.Y1009Tfs*136|3|0.35|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant;SCN3A|p.N1922Ifs*19|1|0.09|ENSG00000153253|chr2:165090388-165090388|T/-|frameshift_variant;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant;SCN3A|p.T1958Qfs*16|1|0.28|ENSG00000153253|chr2:165090281-165090281|T/-|frameshift_variant;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;ENSG00000185313|ENST00000449082|SCN10A;SCN10A|p.F1805Lfs*8|1|0.1|ENSG00000185313|chr3:38697805-38697805|A/-|frameshift_variant;ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;nc|ENSG00000144285|P35498-3|SCN1A ENSG00000136531|ENST00000375437|SCN2A;SCN3A|p.N1922Ifs*19|1|0.09|ENSG00000153253|chr2:165090388-165090388|T/-|frameshift_variant;ENSG00000185313|ENST00000449082|SCN10A;ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000144285|P35498-3|SCN1A ENSG00000136531|ENST00000375437|SCN2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73968505859375 3 478.973384 1433.89832 NaN NaN NaN NaN NaN NaN NaN 68.731 1 65.551 65.051 66.051 -3.1796 0 0 0 0.22632 1 13354 13354 0.50596 0.41111 1 28504 4017;4965;6981;1021;6877;12364 19051 19058 28083 28083 0.19872965947115517 LRSFSRLLDP 10 Unmodified _LRSFSRLLDP_ 0 0 0 REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2994384765625 2 602.345855 1202.67716 NaN NaN NaN NaN NaN NaN NaN 156.7 1 151.92 151.42 152.42 -4.7885 0 0 0 0.22588 1 31162 31162 6.2058 0 1 + 28505 20269 19052 19059 28084 28084 0.08392481180044342 LRSHPAQLKH 10 Unmodified _LRSHPAQLKH_ 0 0 0 nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant nc|ENSG00000005810|O75592-2|MYCBP2 nc|ENSG00000005810|O75592-2|MYCBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 396.2301025390625 3 396.231634 1185.67307 NaN NaN NaN NaN NaN NaN NaN 56.429 1 53.253 52.753 53.753 -3.1761 0 0 0 2.8426 1 10499 10499 0.063865 0 1 28506 996 19053 19060 28085 28085 0.08766436476980743 LRSPCGELR 9 Unmodified _LRSPCGELR_ 0 0 0 REV__ENST00000416152.5_2_3:195590765-195591023:-|nuORF REV__ENST00000416152.5_2_3:195590765-195591023:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.85858154296875 3 344.186926 1029.53895 -0.2571 -8.8491E-05 0.40516 0.00013945 0.14806 5.0961E-05 344.1870810987265 33.322 0.5202 31.005 30.732 31.252 -2.3175 22 14 2 0 0 0 0.6797 1 6068 6068 7.609 0 1 600440 + 28507 21463 19054 19061 28086 28086 0.025360346599200057 LRSPCGELR 9 Unmodified _LRSPCGELR_ 0 0 0 REV__ENST00000416152.5_2_3:195590765-195591023:-|nuORF REV__ENST00000416152.5_2_3:195590765-195591023:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 344.186926 1029.53895 -0.32294 -0.00011115 -0.142 -4.8874E-05 -0.46494 -0.00016003 344.1870261315375 30.985 0.48418 30.985 30.66 31.144 0 -0.040339 -3.8197E-05 NaN 7.609 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 591040 + 28508 21463 19054 19061 0.025360346599200057 LRSPCGELR 9 Unmodified _LRSPCGELR_ 0 0 0 REV__ENST00000416152.5_2_3:195590765-195591023:-|nuORF REV__ENST00000416152.5_2_3:195590765-195591023:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 344.186926 1029.53895 0.23698 8.1565E-05 -0.41149 -0.00014163 -0.17451 -6.0063E-05 344.5210084204113 33.186 0.63337 31.039 30.589 31.222 -2.1468 0.013659 -0.00031646 NaN 7.609 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 813170 + 28509 21463 19054 19061 0.025360346599200057 LRSPCGELR 9 Unmodified _LRSPCGELR_ 0 0 0 REV__ENST00000416152.5_2_3:195590765-195591023:-|nuORF REV__ENST00000416152.5_2_3:195590765-195591023:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 344.186926 1029.53895 -0.27138 -9.3407E-05 -0.099229 -3.4153E-05 -0.37061 -0.00012756 344.1869766236495 33.289 0.44155 31.073 30.774 31.216 -2.2158 0.047483 5.9651E-06 NaN 7.609 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 589420 + 28510 21463 19054 19061 0.025360346599200057 LRSSLHPGEK 10 Unmodified _LRSSLHPGEK_ 0 0 0 REV__ENST00000420697.1_3_7:97880760-97881394:-|nuORF REV__ENST00000420697.1_3_7:97880760-97881394:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.212158203125 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 88.753 1 85.003 84.503 85.503 -3.7501 0 0 0 0.22588 1 16993 16993 10.899 0.099449 1 + 28511 21505 19055 19062 28087 28087 0.058153351118335195 LRSSRGHPD 9 Unmodified _LRSSRGHPD_ 0 0 0 REV__ENST00000478568.1_3_1:247081659-247094967:-|nuORF REV__ENST00000478568.1_3_1:247081659-247094967:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.18017578125 3 342.18094 1023.52099 NaN NaN NaN NaN NaN NaN NaN 59.051 1 56.14 55.64 56.64 -2.9105 0 0 0 0.23508 1 11346 11346 4.897 0.95262 1 + 28512 22144 19056 19063 28088 28088 0.010170357294214227 LRSWGLLPGA 10 Unmodified _LRSWGLLPGA_ 0 0 0 ENST00000506763.5_1_4:2243363-2243819:-|nuORF ENST00000506763.5_1_4:2243363-2243819:-|nuORF ENST00000506763.5_1_4:2243363-2243819:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 535.2871704101562 2 535.311284 1068.60801 0.52851 0.00028292 -0.87813 -0.00047007 -0.34962 -0.00018715 535.3107591035161 73.374 0.66512 69.698 69.368 70.033 -3.6764 29 18 2 0 0 0 1.1231 1 13818 13818 3.5927 3.1844 1 3043200 28513 10686 19057 19064 28089 28089 0.07645441951149223 LRSWGLLPGA 10 Unmodified _LRSWGLLPGA_ 0 0 0 ENST00000506763.5_1_4:2243363-2243819:-|nuORF ENST00000506763.5_1_4:2243363-2243819:-|nuORF ENST00000506763.5_1_4:2243363-2243819:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 535.311284 1068.60801 0.43327 0.00023194 -0.78776 -0.0004217 -0.35449 -0.00018976 535.3107996188219 73.37 0.59348 69.776 69.456 70.049 -3.594 0.038773 3.8434E-05 NaN 1.9275 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3498800 28514 10686 19057 19064 0.07645441951149223 LRSWWPRWWWA 11 Unmodified _LRSWWPRWWWA_ 0 0 0 ENST00000355943.7_1_5:110074744-110074849:+|nuORF ENST00000355943.7_1_5:110074744-110074849:+|nuORF ENST00000355943.7_1_5:110074744-110074849:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7866821289062 3 543.945717 1628.81532 NaN NaN NaN NaN NaN NaN NaN 49.574 1 46.693 46.193 47.193 -2.8811 0 0 0 0.22632 1 9392 9392 0.00056442 0 1 28515 8965 19058 19065 28090 28090 0.026066492191603174 LRTLKSNRY 9 Unmodified _LRTLKSNRY_ 0 0 0 REV__nc|ENSG00000131437|Q9Y496|KIF3A REV__nc|ENSG00000131437|Q9Y496|KIF3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3386840820312 2 575.838197 1149.66184 0.33265 0.00019155 -0.55016 -0.0003168 -0.21751 -0.00012525 575.8380128350476 36.324 0.63508 36.324 35.855 36.49 0 31 17 3 0 0 0 0.46541 1 6650 6650 21.747 0 1 4259800 + 28516 16073 19059 19066 28091 28091 0.09299614382848631 LRTLKSNRY 9 Unmodified _LRTLKSNRY_ 0 0 0 REV__nc|ENSG00000131437|Q9Y496|KIF3A REV__nc|ENSG00000131437|Q9Y496|KIF3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.339111328125 2 575.838197 1149.66184 0.14648 8.435E-05 -0.30303 -0.0001745 -0.15655 -9.0145E-05 575.8379950284001 38.555 0.66832 36.113 35.845 36.513 -2.4419 28 18 2 0 0 0 0.46541 1 6840 6840 21.747 0 1 1037500 + 28517 16073 19059 19066 28092 28092 0.09299614382848631 LRTLKSNRY 9 Unmodified _LRTLKSNRY_ 0 0 0 REV__nc|ENSG00000131437|Q9Y496|KIF3A REV__nc|ENSG00000131437|Q9Y496|KIF3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3382568359375 2 575.838197 1149.66184 0.18992 0.00010936 0.35479 0.0002043 0.5447 0.00031366 575.8384784818994 38.465 0.45665 36.06 35.844 36.301 -2.4049 22 12 2 0 0 0 0.46541 1 6837 6837 21.747 0 1 1197300 + 28518 16073 19059 19066 28093 28093 0.09299614382848631 LRTLKSNRY 9 Unmodified _LRTLKSNRY_ 0 0 0 REV__nc|ENSG00000131437|Q9Y496|KIF3A REV__nc|ENSG00000131437|Q9Y496|KIF3A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.838197 1149.66184 0.33265 0.00019155 -0.55016 -0.0003168 -0.21751 -0.00012525 575.8380128350476 36.324 0.63508 36.324 35.855 36.49 0 0.16272 -0.00060712 NaN 21.747 31 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4259800 + 28519 16073 19059 19066 0.09299614382848631 LRTNEAKM 8 Unmodified _LRTNEAKM_ 0 0 0 REV__nc|ENSG00000118557|Q8TBY8-3|PMFBP1 REV__nc|ENSG00000118557|Q8TBY8-3|PMFBP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7740478515625 2 481.758027 961.5015 NaN NaN NaN NaN NaN NaN NaN 118.58 1 113.97 113.47 114.47 -4.6106 0 0 0 0.20294 1 22753 22753 23.148 3.7094 1 + 28520 15557 19060 19067 28094 28094 0.01920943394304686 LRTPSLNPPA 10 Unmodified _LRTPSLNPPA_ 0 0 0 ENST00000557439.5_1_14:104172000-104172285:-|nuORF ENST00000557439.5_1_14:104172000-104172285:-|nuORF ENST00000557439.5_1_14:104172000-104172285:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2791137695312 2 533.306198 1064.59784 0.52718 0.00028115 -0.21558 -0.00011497 0.3116 0.00016618 533.3060214373261 78.939 0.76105 78.939 78.579 79.34 0 40 21 2 0 0 0 0.6817 1 15312 15312 13.042 1.4022 1 14920000 28521 11256 19061 19068 28095 28095 0.06812834225888764 LRTPSLNPPA 10 Unmodified _LRTPSLNPPA_ 0 0 0 ENST00000557439.5_1_14:104172000-104172285:-|nuORF ENST00000557439.5_1_14:104172000-104172285:-|nuORF ENST00000557439.5_1_14:104172000-104172285:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2731323242188 2 533.306198 1064.59784 -0.077148 -4.1143E-05 1.043 0.00055623 0.96583 0.00051508 533.3061157656242 82.41 0.96484 78.711 78.246 79.211 -3.6985 77 27 4 0 0 0 0.6817 1 15776 15776 13.042 1.4022 1 14870000 28522 11256 19061 19068 28096 28096 0.06812834225888764 LRTPSLNPPA 10 Unmodified _LRTPSLNPPA_ 0 0 0 ENST00000557439.5_1_14:104172000-104172285:-|nuORF ENST00000557439.5_1_14:104172000-104172285:-|nuORF ENST00000557439.5_1_14:104172000-104172285:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.306198 1064.59784 0.52718 0.00028115 -0.21558 -0.00011497 0.3116 0.00016618 533.3060214373261 78.939 0.76105 78.939 78.579 79.34 0 0 0 NaN 13.042 40 21 2 NaN NaN NaN NaN 0 NaN NaN 0 14920000 28523 11256 19061 19068 0.06812834225888764 LRTRARTNY 9 Unmodified _LRTRARTNY_ 0 0 0 REV__ENST00000517291.1_1_8:128748059-128748855:+|nuORF REV__ENST00000517291.1_1_8:128748059-128748855:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32177734375 2 575.825621 1149.63669 0.28096 0.00016179 -2.2596 -0.0013011 -1.9787 -0.0011394 576.3251663250642 119.97 0.59245 115.45 115.26 115.85 -4.5221 18 16 2 0 0 0 0.49624 1 23656 23656 1.2148 0 1 2689800 + 28524 20152 19062 19069 28097 28097 0.06785559580271183 LRTRASPPPR 10 Unmodified _LRTRASPPPR_ 0 0 0 ENST00000490980.1_1_10:99080712-99081474:+|nuORF ENST00000490980.1_1_10:99080712-99081474:+|nuORF ENST00000490980.1_1_10:99080712-99081474:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3328857421875 2 575.843813 1149.67307 0.41432 0.00023858 -1.0362 -0.00059668 -0.62187 -0.0003581 575.8430798815533 155.69 1.8796 150.44 150.08 151.95 -5.2526 77 52 2 0 0 0 0.74994 1 30247 30247 5.7319 0.83484 1 3268100 28525 10521 19063 19070 28098 28098 0.10422436476960684 LRTRRLRWQRR 11 Unmodified _LRTRRLRWQRR_ 0 0 0 REV__OLFML2B|p.P32Qfs*50|1|0.3|ENSG00000162745|chr1:162023336-162023336|G/-|frameshift_variant REV__OLFML2B|p.P32Qfs*50|1|0.3|ENSG00000162745|chr1:162023336-162023336|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2850952148438 3 532.997586 1595.97093 NaN NaN NaN NaN NaN NaN NaN 163.96 1 159.17 158.67 159.67 -4.7898 0 0 0 0.23698 1 32726 32726 0.40827 0.31342 1 + 28526 24398 19064 19071 28099 28099 0.19678112793280889 LRVDKIDGY 9 Unmodified _LRVDKIDGY_ 0 0 0 REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1 REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 97.469 1 97.469 96.969 97.969 0 0 0 0 0.23508 1 19102 19102 2.4985 0.65425 1 + 28527 14133 19065 19072 28100 28100 0.046171279889904326 LRVLSMPF 8 Unmodified _LRVLSMPF_ 0 0 0 ENST00000564546.5_1_16:30076510-30076561:+|nuORF ENST00000564546.5_1_16:30076510-30076561:+|nuORF ENST00000564546.5_1_16:30076510-30076561:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7771911621094 2 481.778231 961.541908 NaN NaN NaN NaN NaN NaN NaN 163.87 1 159.08 158.58 159.58 -4.7898 0 0 0 0.22934 1 32700 32700 0.62683 0 1 28528 11344 19066 19073 28101 28101 0.059599097847240046 LRVPRHGPY 9 Unmodified _LRVPRHGPY_ 0 0 0 REV__ENSG00000175514|ENST00000312457|GPR152 REV__ENSG00000175514|ENST00000312457|GPR152 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.780029296875 2 547.814525 1093.6145 0.13757 7.5362E-05 -0.695 -0.00038073 -0.55744 -0.00030537 547.8142930495582 61.694 0.17385 58.325 58.219 58.393 -3.3694 6 4 2 0 0 0 0.5428 1 11515 11515 1.2148 0.80657 1 688660 + 28529 18479 19067 19074 28102 28102 0.07143379902527158 LRVPRHGPY 9 Unmodified _LRVPRHGPY_ 0 0 0 REV__ENSG00000175514|ENST00000312457|GPR152 REV__ENSG00000175514|ENST00000312457|GPR152 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.814525 1093.6145 0.13757 7.5362E-05 -0.695 -0.00038073 -0.55744 -0.00030537 547.8142930495582 61.694 0.17385 58.325 58.219 58.393 -3.3694 0 0 NaN 1.2148 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 688660 + 28530 18479 19067 19074 0.07143379902527158 LRVRATKQLF 10 Unmodified _LRVRATKQLF_ 0 0 0 ENST00000546859.5_1_12:69979244-69981900:+|nuORF ENST00000546859.5_1_12:69979244-69981900:+|nuORF ENST00000546859.5_1_12:69979244-69981900:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 410.8685607910156 3 411.259302 1230.75608 0.041495 1.7065E-05 -0.066833 -2.7486E-05 -0.025338 -1.042E-05 411.25927358642326 32.17 0.83131 32.17 31.844 32.675 0 75 23 5 0 0 0 0.76577 1 5931 5931 0.77653 0 1 20001000 28531 11134 19068 19075 28103 28103 0.1499275320495599 LRVRKLLLLIP 11 Unmodified _LRVRKLLLLIP_ 0 0 0 USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant;ENSG00000162402|ENST00000294383|USP24 USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 445.3196716308594 3 445.31838 1332.93331 NaN NaN NaN NaN NaN NaN NaN 165.25 1 160.46 159.96 160.96 -4.7898 0 0 0 0.23698 1 33081 33081 0 0 1 28532 5329 19069 19076 28104 28104 0.28016208755138905 LRVRVMFFKW 10 Unmodified _LRVRVMFFKW_ 0 0 0 REV__DNAH11|p.A2973V|1|0.28|ENSG00000105877|chr7:21750342-21750342|C/T|missense_variant REV__DNAH11|p.A2973V|1|0.28|ENSG00000105877|chr7:21750342-21750342|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5294494628906 3 461.269032 1380.78527 NaN NaN NaN NaN NaN NaN NaN 14.983 1 14.983 14.483 15.483 0 0 0 0 2.8426 1 2261 2261 0.043787 0 1 + 28533 13705 19070 19077 28105 28105 0.1101057422959002 LRVTKHHGM 9 Unmodified _LRVTKHHGM_ 0 0 0 REV__ENST00000409016.8_1_2:99206031-99206208:+|nuORF REV__ENST00000409016.8_1_2:99206031-99206208:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2021789550781 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 72.611 1 72.611 72.111 73.111 0 0 0 0 0.21434 1 14083 14083 19.362 0.98885 1 + 28534 21403 19071 19078 28106 28106 0.05087733650748305 LRVTKHHGM 9 Unmodified _LRVTKHHGM_ 0 0 0 REV__ENST00000409016.8_1_2:99206031-99206208:+|nuORF REV__ENST00000409016.8_1_2:99206031-99206208:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016906738281 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 76.648 1 72.925 72.425 73.425 -3.7227 0 0 0 0.23108 1 14518 14518 14.405 3.6059 1 + 28535 21403 19071 19078 28107 28107 0.05087733650748305 LRWEPPADP 9 Unmodified _LRWEPPADP_ 0 0 0 nc|ENSG00000168334|Q702N8-2|XIRP1;XIRP1|p.W1135Gfs*2|1|0.26|ENSG00000168334|chr3:39186044-39186044|C/-|frameshift_variant;XIRP1|p.G1198Afs*29|1|0.11|ENSG00000168334|chr3:39185853-39185853|C/-|frameshift_variant;ENSG00000168334|ENST00000340369|XIRP1 nc|ENSG00000168334|Q702N8-2|XIRP1 nc|ENSG00000168334|Q702N8-2|XIRP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2778930664062 2 540.777274 1079.53999 0.54844 0.00029659 0.43209 0.00023367 0.98054 0.00053025 540.7772037818254 105.82 1.0475 105.82 105.28 106.33 0 74 29 3 0 0 0 0.19983 1 20894 20894 1.2148 0.69841 1 4550400 28536 5898 19072 19079 28108 28108 0.003405723004561878 LRWLRKEERRR 11 Unmodified _LRWLRKEERRR_ 0 0 0 REV__CACNA1H|p.R1579W|1|0.32|ENSG00000196557|chr16:1212114-1212114|C/T|missense_variant REV__CACNA1H|p.R1579W|1|0.32|ENSG00000196557|chr16:1212114-1212114|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2786254882812 3 533.321846 1596.94371 NaN NaN NaN NaN NaN NaN NaN 145.51 1 140.84 140.34 141.34 -4.6694 0 0 0 0.22632 1 28845 28845 0.094841 0.094841 1 + 28537 13237 19073 19080 28109 28109 0.1691158446224108 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2764282226562 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 126.45 1 126.45 125.95 126.95 0 0 0 0 0.22632 1 24954 24954 0.50596 0 1 + 28538 23786 19074 19081 28110 28110 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2637939453125 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 139.77 1 139.77 139.27 140.27 0 0 0 0 0.22632 1 27797 27797 1.4074 1.3126 1 + 28539 23786 19074 19081 28111 28111 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2682495117188 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 140.14 1 140.14 139.64 140.64 0 0 0 0 0.22632 1 27886 27886 0.58532 0.49048 1 + 28540 23786 19074 19081 28112 28112 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.275146484375 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 140.18 1 140.18 139.68 140.68 0 0 0 0 0.22632 1 27895 27895 0.58532 0.41332 1 + 28541 23786 19074 19081 28113 28113 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.275146484375 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 140.63 1 140.63 140.13 141.13 0 0 0 0 0.22632 1 28006 28006 1.4074 1.4069 1 + 28542 23786 19074 19081 28114 28114 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2675170898438 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 140.73 1 140.73 140.23 141.23 0 0 0 0 0.22632 1 28028 28028 1.4074 1.3126 1 + 28543 23786 19074 19081 28115 28115 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2757568359375 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 140.8 1 140.8 140.3 141.3 0 0 0 0 0.22632 1 28039 28039 1.4074 1.3126 1 + 28544 23786 19074 19081 28116 28116 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2752075195312 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 141.24 1 141.24 140.74 141.74 0 0 0 0 0.22632 1 28135 28135 1.4074 0.90148 1 + 28545 23786 19074 19081 28117 28117 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2737426757812 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 141.45 1 141.45 140.95 141.95 0 0 0 0 0.22632 1 28182 28182 0.58532 0.079364 1 + 28546 23786 19074 19081 28118 28118 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2728881835938 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 143.36 1 138.7 138.2 139.2 -4.656 0 0 0 0.22632 1 28353 28353 0.172 0.077159 1 + 28547 23786 19074 19081 28119 28119 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2747802734375 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 143.57 1 138.91 138.41 139.41 -4.656 0 0 0 0.22632 1 28397 28397 0.58532 0.49048 1 + 28548 23786 19074 19081 28120 28120 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.274169921875 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 144.26 1 139.59 139.09 140.09 -4.6694 0 0 0 0.22632 1 28558 28558 0.172 0 1 + 28549 23786 19074 19081 28121 28121 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2767944335938 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 144.47 1 139.8 139.3 140.3 -4.6694 0 0 0 0.22632 1 28608 28608 0.58532 0.49048 1 + 28550 23786 19074 19081 28122 28122 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2713012695312 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 144.95 1 140.28 139.78 140.78 -4.6694 0 0 0 0.22632 1 28720 28720 0.58532 0.49048 1 + 28551 23786 19074 19081 28123 28123 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2761840820312 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 145.17 1 140.5 140 141 -4.6694 0 0 0 0.22632 1 28768 28768 1.4074 0.90148 1 + 28552 23786 19074 19081 28124 28124 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2741088867188 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 145.41 1 140.74 140.24 141.24 -4.6694 0 0 0 0.22632 1 28825 28825 0.172 0.077159 1 + 28553 23786 19074 19081 28125 28125 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2783813476562 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 147.76 1 143.05 142.55 143.55 -4.7095 0 0 0 0.22632 1 29330 29330 0.172 0.077159 1 + 28554 23786 19074 19081 28126 28126 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2739868164062 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 141.26 1 136.27 135.77 136.77 -4.9877 0 0 0 0.22632 1 27198 27198 0.58532 0.41332 1 + 28555 23786 19074 19081 28127 28127 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2748413085938 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 143.64 1 138.61 138.11 139.11 -5.0261 0 0 0 0.22632 1 27692 27692 0.172 0.077159 1 + 28556 23786 19074 19081 28128 28128 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2774047851562 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 145.02 1 139.96 139.46 140.46 -5.0671 0 0 0 0.22632 1 28006 28006 1.4074 1.3126 1 + 28557 23786 19074 19081 28129 28129 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.271484375 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 145.2 1 140.13 139.63 140.63 -5.0671 0 0 0 0.22632 1 28049 28049 0.172 0.077159 1 + 28558 23786 19074 19081 28130 28130 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2740478515625 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 145.47 1 140.41 139.91 140.91 -5.0671 0 0 0 0.22632 1 28113 28113 0.172 0.077159 1 + 28559 23786 19074 19081 28131 28131 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.27197265625 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 145.68 1 140.57 140.07 141.07 -5.1108 0 0 0 0.22632 1 28157 28157 0.172 0.077159 1 + 28560 23786 19074 19081 28132 28132 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2763671875 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 146.44 1 141.33 140.83 141.83 -5.1108 0 0 0 0.22632 1 28320 28320 1.4074 0.90148 1 + 28561 23786 19074 19081 28133 28133 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2744750976562 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 150.28 1 145.08 144.58 145.58 -5.1994 0 0 0 0.22632 1 29120 29120 0.026206 0 1 + 28562 23786 19074 19081 28134 28134 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2739868164062 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 116.28 1 111.92 111.42 112.42 -4.3585 0 0 0 0.22632 1 22384 22384 0.58532 0.49048 1 + 28563 23786 19074 19081 28135 28135 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2764892578125 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 143.72 1 138.82 138.32 139.32 -4.8982 0 0 0 0.22632 1 27742 27742 0.172 0.077159 1 + 28564 23786 19074 19081 28136 28136 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2739868164062 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 145.48 1 140.53 140.03 141.03 -4.9445 0 0 0 0.22632 1 28128 28128 2.732 2.226 1 + 28565 23786 19074 19081 28137 28137 0.02017376827075168 LRWMQEWKMKW 11 Unmodified _LRWMQEWKMKW_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2732543945312 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 145.93 1 140.93 140.43 141.43 -5 0 0 0 0.22632 1 28232 28232 1.4074 1.3126 1 + 28566 23786 19074 19081 28138 28138 0.02017376827075168 LRWMVPPVP 9 Unmodified _LRWMVPPVP_ 0 0 0 REV__nc|ENSG00000130283|P27539|GDF1 REV__nc|ENSG00000130283|P27539|GDF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7796630859375 2 547.812605 1093.61066 NaN NaN NaN NaN NaN NaN NaN 9.7751 1 9.7751 9.2751 10.275 0 0 0 0 0.19624 1 1168 1168 0.073264 0 1 + 28567 24035 19075 19082 28139 28139 0.06759574084435371 LRWPVGQG 8 Unmodified _LRWPVGQG_ 0 0 0 ENST00000248929.13_1_22:40766617-40796708:+|nuORF ENST00000248929.13_1_22:40766617-40796708:+|nuORF ENST00000248929.13_1_22:40766617-40796708:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 456.7562255859375 2 456.756144 911.497735 NaN NaN NaN NaN NaN NaN NaN 129.46 1 124.72 124.22 125.22 -4.7408 0 0 0 0.2343 1 24912 24912 0.063987 0 1 28568 8215 19076 19083 28140 28140 0.03844641682769634 LRWRFWWEY 9 Unmodified _LRWRFWWEY_ 0 0 0 REV__ENSG00000127995|ENST00000297273|CASD1 REV__ENSG00000127995|ENST00000297273|CASD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2430419921875 3 481.243652 1440.70913 NaN NaN NaN NaN NaN NaN NaN 92.951 1 92.951 92.451 93.451 0 0 0 0 0.19657 1 18178 18178 0.40827 0.23627 1 + 28569 15910 19077 19084 28141 28141 0.006398936538744238 LRWRFWWEY 9 Unmodified _LRWRFWWEY_ 0 0 0 REV__ENSG00000127995|ENST00000297273|CASD1 REV__ENSG00000127995|ENST00000297273|CASD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24102783203125 3 481.243652 1440.70913 NaN NaN NaN NaN NaN NaN NaN 97.482 1 93.247 92.747 93.747 -4.2348 0 0 0 0.19687 1 18622 18622 1.2148 1.1834 1 + 28570 15910 19077 19084 28142 28142 0.006398936538744238 LRWWEQRRWLR 11 Unmodified _LRWWEQRRWLR_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4024047851562 2 842.9684 1683.92225 NaN NaN NaN NaN NaN NaN NaN 171.52 1 166.6 166.1 167.1 -4.9149 0 0 0 0.22632 1 33976 33976 1.4551 0.94916 1 + 28571 24768 19078 19085 28143 28143 0.10764199433538124 LRYKFSWS 8 Unmodified _LRYKFSWS_ 0 0 0 AASS|p.P693Qfs*3|2|0.34|ENSG00000008311|chr7:122086120-122086120|A/-|frameshift_variant;AASS|p.L740Ifs*13|1|0.21|ENSG00000008311|chr7:122081562-122081563|-/T|frameshift_variant;ENSG00000008311|ENST00000417368|AASS AASS|p.P693Qfs*3|2|0.34|ENSG00000008311|chr7:122086120-122086120|A/-|frameshift_variant AASS|p.P693Qfs*3|2|0.34|ENSG00000008311|chr7:122086120-122086120|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7906494140625 2 543.790184 1085.56581 NaN NaN NaN NaN NaN NaN NaN 12.052 1 10.923 10.423 11.423 -1.1293 0 0 0 0.2396 1 1460 1460 0.12286 0 1 28572 4 19079 19086 28144 28144 0.026454665427536384 LRYLRQLLQLG 11 Unmodified _LRYLRQLLQLG_ 0 0 0 REV__SERAC1|p.H383Afs*11|1|0.03|ENSG00000122335|chr6:158120445-158120446|-/A|frameshift_variant REV__SERAC1|p.H383Afs*11|1|0.03|ENSG00000122335|chr6:158120445-158120446|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23736572265625 3 458.285628 1371.83505 NaN NaN NaN NaN NaN NaN NaN 160.57 1 155.77 155.27 156.27 -4.7952 0 0 0 0.22632 1 31931 31931 0.172 0.16604 1 + 28573 15685 19080 19087 28145 28145 0.16400980439266277 LRYLRYPL 8 Unmodified _LRYLRYPL_ 0 0 0 REV__ENST00000571688.5_2_16:11642965-11643019:-|nuORF REV__ENST00000571688.5_2_16:11642965-11643019:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 365.56280517578125 3 365.222076 1092.6444 0.081631 2.9813E-05 -0.11385 -4.1579E-05 -0.032214 -1.1765E-05 365.5563300020313 129.52 0.93568 124.7 124.13 125.06 -4.817 39 26 2 0 0 0 8448 1 24884 24884 3.2813 1.8262 1 906830 + 28574 23167 19081 19088 28146 28146 0.10178318847852097 LRYLRYPL 8 Unmodified _LRYLRYPL_ 0 0 0 REV__ENST00000571688.5_2_16:11642965-11643019:-|nuORF REV__ENST00000571688.5_2_16:11642965-11643019:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 365.222076 1092.6444 -0.22378 -8.1731E-05 0.45265 0.00016532 0.22887 8.3587E-05 365.2222295030422 129.4 0.83206 124.77 124.26 125.09 -4.6292 0.034319 0.00043877 NaN 3.2813 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1280000 + 28575 23167 19081 19088 0.10178318847852097 LRYVKAKA 8 Unmodified _LRYVKAKA_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.037841796875 3 316.871155 947.591636 -0.54664 -0.00017321 0.3999 0.00012672 -0.14674 -4.6496E-05 316.87125165050935 17.698 0.28804 17.698 17.552 17.84 0 16 7 3 0 0 0 1.0248 1 2808 2808 6.7232 0.51738 1 1253900 28576 6337 19082 19089 28147 28147 0.11574360785039062 LRYVKAKA 8 Unmodified _LRYVKAKA_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 316.871155 947.591636 -0.33233 -0.00010531 0.27652 8.762E-05 -0.055818 -1.7687E-05 316.8711130047651 19.094 0.21459 17.769 17.648 17.863 -1.3251 0.035376 -7.6745E-05 NaN 6.7232 11 5 3 NaN NaN NaN NaN 0 NaN NaN 0 1095200 28577 6337 19082 19089 0.11574360785039062 LRYWEYWQVRV 11 Unmodified _LRYWEYWQVRV_ 0 0 0 ENST00000367558.5_1_1:182572378-182573464:-|nuORF ENST00000367558.5_1_1:182572378-182573464:-|nuORF ENST00000367558.5_1_1:182572378-182573464:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2742309570312 3 533.280654 1596.82013 NaN NaN NaN NaN NaN NaN NaN 80.911 1 77.072 76.572 77.572 -3.8392 0 0 0 0.22632 1 15360 15360 0.50596 0.50539 1 28578 9073 19083 19090 28148 28148 0.04559488571226211 LSADTTWAP 9 Unmodified _LSADTTWAP_ 0 0 0 REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.236572265625 2 481.234907 960.455261 0.10439 5.0237E-05 0.7939 0.00038205 0.89829 0.00043229 481.2352922821062 90.193 0.66703 86.415 86.044 86.711 -3.7779 24 18 2 0 0 0 0.46598 1 17316 17316 0.12781 0 1 972440 + 28579 16831 19084 19091 28149 28149 -0.02654798236142142 LSAFEQLV 8 Unmodified _LSAFEQLV_ 0 0 0 BAZ1A|p.L1455*|1|0.27|ENSG00000198604|chr14:34758726-34758726|A/-|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A;ENST00000557739.1_1_14:35227840-35228035:-|nuORF BAZ1A|p.L1455*|1|0.27|ENSG00000198604|chr14:34758726-34758726|A/-|frameshift_variant BAZ1A|p.L1455*|1|0.27|ENSG00000198604|chr14:34758726-34758726|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7503356933594 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 143.52 1 138.63 138.13 139.13 -4.8982 0 0 0 0.21486 1 27703 27703 9.3474 0 1 28580 299 19085 19092 28150 28150 0.029309801489148413 LSAFFGNCP 9 Unmodified _LSAFFGNCP_ 0 0 0 nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7227783203125 2 478.220746 954.426938 0.047783 2.2851E-05 0.66232 0.00031673 0.7101 0.00033958 478.22101742850606 53.924 0.38084 50.788 50.559 50.94 -3.1352 23 10 3 0 0 0 0.46541 1 9963 9963 21.747 0 1 1273600 28581 2472 19086 19093 28151 28151 -0.052098194170639545 LSAFLWRLRV 10 Unmodified _LSAFLWRLRV_ 0 0 0 ENST00000382892.6_2_4:1894615-1901103:+|nuORF ENST00000382892.6_2_4:1894615-1901103:+|nuORF ENST00000382892.6_2_4:1894615-1901103:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7772216796875 2 630.882407 1259.75026 NaN NaN NaN NaN NaN NaN NaN 143.53 1 138.5 138 139 -5.0261 0 0 0 0.22588 1 27670 27670 6.7232 0 1 28582 9345 19087 19094 28152 28152 0.13077654693279328 LSAGCYHR 8 Unmodified _LSAGCYHR_ 0 0 0 REV__TMPRSS11B|p.S216N|1|0.26|ENSG00000185873|chr4:68231242-68231242|C/T|missense_variant REV__TMPRSS11B|p.S216N|1|0.26|ENSG00000185873|chr4:68231242-68231242|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7550354003906 2 453.716162 905.41777 NaN NaN NaN NaN NaN NaN NaN 115.05 1 110.74 110.24 111.24 -4.3136 0 0 0 0.22636 1 22154 22154 0.68139 0.42991 1 + 28583 18994 19088 19095 28153 28153 -0.03872167982740393 LSAHDLPLN 9 Unmodified _LSAHDLPLN_ 0 0 0 REV__ENSG00000099381|ENST00000262519|SETD1A REV__ENSG00000099381|ENST00000262519|SETD1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2646484375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 62.08 1 62.08 61.58 62.58 0 0 0 0 0.19721 1 11916 11916 24.021 1.2843 1 + 28584 14637 19089 19096 28154 28154 0.02332883409144415 LSAIFATAVS 10 Unmodified _LSAIFATAVS_ 0 0 0 REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27581787109375 2 490.276575 978.538597 0.19247 9.4366E-05 -0.15521 -7.6096E-05 0.037263 1.8269E-05 490.2763969812373 144.96 0.86562 144.96 144.61 145.48 0 37 24 2 0 0 0 0.6817 1 29067 29067 13.042 0.80181 1 4469700 + 28585 16153 19090 19097 28155 28155 0.04846938211710494 LSAKHSVAPNQ 11 Unmodified _LSAKHSVAPNQ_ 0 0 0 REV__nc|ENSG00000130518|Q9H0B3-3|IQCN REV__nc|ENSG00000130518|Q9H0B3-3|IQCN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3302612304688 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 159.54 1 154.26 153.76 154.76 -5.2748 0 0 0 0.21872 1 30965 30965 14.405 2.9107 1 + 28586 23405 19091 19098 28156 28156 0.04019031249231375 LSALQKAQV 9 Unmodified _LSALQKAQV_ 0 0 0 LPCAT1|p.A47T|1|0.31|ENSG00000153395|chr5:1501600-1501600|C/T|missense_variant;ENSG00000153395|ENST00000283415|LPCAT1 LPCAT1|p.A47T|1|0.31|ENSG00000153395|chr5:1501600-1501600|C/T|missense_variant LPCAT1|p.A47T|1|0.31|ENSG00000153395|chr5:1501600-1501600|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7225341796875 2 479.290017 956.565481 0.091357 4.3786E-05 0.29766 0.00014267 0.38902 0.00018645 479.290176449823 50.987 0.76572 50.987 50.641 51.407 0 44 21 3 0 0 0 0.69192 1 9713 9713 26.884 1.4843 1 8712300 28587 4968 19092 19099 28157 28157 0.0854604682289164 LSALSLSPCA 10 Unmodified _LSALSLSPCA_ 0 0 0 ENST00000424450.1_1_10:135109371-135109476:-|nuORF ENST00000424450.1_1_10:135109371-135109476:-|nuORF ENST00000424450.1_1_10:135109371-135109476:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2540588378906 2 481.254785 960.495018 0.15059 7.2473E-05 -0.36129 -0.00017387 -0.2107 -0.0001014 481.25456868600253 50.831 0.59092 50.831 50.504 51.094 0 27 16 2 0 0 0 0.72406 1 9567 9567 8.7454 1.4562 1 2857300 28588 9703 19093 19100 28158 28158 0.01319005442917387 LSALTWRV 8 Unmodified _LSALTWRV_ 0 0 0 ENST00000403558.1_1_11:57367676-57367742:+|nuORF ENST00000403558.1_1_11:57367676-57367742:+|nuORF ENST00000403558.1_1_11:57367676-57367742:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 473.66363525390625 2 473.279452 944.544351 -0.10694 -5.0614E-05 0.096062 4.5464E-05 -0.010881 -5.1497E-06 473.27940779353025 118.72 1.0444 118.72 118.36 119.41 0 86 29 4 0 0 0 0.88974 1 23522 23522 0.25148 0.25148 1 34129000 28589 9523 19094 19101 28159 28159 0.06986081514037323 LSAPGPYDVY 10 Unmodified _LSAPGPYDVY_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2606811523438 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 75.427 1 71.794 71.294 72.294 -3.6337 0 0 0 0.22544 1 14336 14336 19.257 3.4098 1 + 28590 19304 19095 19102 28160 28160 -0.02425956030560883 LSASDEELSPR 11 Unmodified _LSASDEELSPR_ 0 0 0 REV__nc|ENSG00000166886|Q15742-3|NAB2 REV__nc|ENSG00000166886|Q15742-3|NAB2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2988891601562 2 602.296224 1202.5779 NaN NaN NaN NaN NaN NaN NaN 150.53 1 150.53 150.03 151.03 0 0 0 0 0.22765 1 30137 30137 10.151 0.76745 1 + 28591 17884 19096 19103 28161 28161 -0.015290062953681627 LSASDEELSPR 11 Unmodified _LSASDEELSPR_ 0 0 0 REV__nc|ENSG00000166886|Q15742-3|NAB2 REV__nc|ENSG00000166886|Q15742-3|NAB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.298583984375 2 602.296224 1202.5779 NaN NaN NaN NaN NaN NaN NaN 148.87 1 144.16 143.66 144.66 -4.7095 0 0 0 0.2321 1 29565 29565 6.6304 0.89852 1 + 28592 17884 19096 19103 28162 28162 -0.015290062953681627 LSASIFTLQ 9 Unmodified _LSASIFTLQ_ 0 0 0 ENST00000486012.5_1_1:233231420-233297095:-|nuORF ENST00000486012.5_1_1:233231420-233297095:-|nuORF ENST00000486012.5_1_1:233231420-233297095:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27569580078125 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 153.89 1 149.12 148.62 149.62 -4.7684 0 0 0 0.19006 1 30582 30582 24.991 0.97039 1 28593 10449 19097 19104 28163 28163 0.04846938211710494 LSATGLHARVQ 11 Unmodified _LSATGLHARVQ_ 0 0 0 REV__nc|ENSG00000178297|Q7Z410|TMPRSS9 REV__nc|ENSG00000178297|Q7Z410|TMPRSS9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3306274414062 2 576.827829 1151.64111 0.092648 5.3442E-05 -2.883 -0.001663 -2.7904 -0.0016096 576.8264259897717 142.39 0.31558 137.74 137.58 137.89 -4.656 16 8 4 0 0 0 0.88538 1 28165 28165 10.151 0 1 4267200 + 28594 18599 19098 19105 28164 28164 0.07135024003173385 LSAVKEEKMPQ 11 Unmodified _LSAVKEEKMPQ_ 0 0 0 REV__ENSG00000205667|ENST00000381130|ARSH REV__ENSG00000205667|ENST00000381130|ARSH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7620849609375 2 630.336838 1258.65912 0.59542 0.00037531 -2.2077 -0.0013916 -1.6123 -0.0010163 630.8379800720008 150.64 0.13812 145.52 145.42 145.56 -5.1204 5 3 2 0 0 0 0.64855 1 29197 29197 15.248 6.5031 1 1185200 + 28595 19597 19099 19106 28165 28165 0.04013978143029817 LSAVSFWF 8 Unmodified _LSAVSFWF_ 0 0 0 REV__ENSG00000116685|ENST00000376572|KIAA2013 REV__ENSG00000116685|ENST00000376572|KIAA2013 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7220153808594 2 478.747453 955.480354 NaN NaN NaN NaN NaN NaN NaN 146.01 1 141.01 140.51 141.51 -5 0 0 0 0.21323 1 28251 28251 14.582 0 1 + 28596 15491 19100 19107 28166 28166 0.0008330135709684328 LSAWPPLPV 9 Unmodified _LSAWPPLPV_ 0 0 0 REV__ENST00000483848.5_1_3:57582803-57582881:-|nuORF REV__ENST00000483848.5_1_3:57582803-57582881:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2648620605469 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 118.12 1 118.12 117.62 118.62 0 0 0 0 0.23508 1 23269 23269 12.532 0 1 + 28597 22205 19101 19108 28167 28167 0.06371849799563734 LSCACQKRQS 10 Unmodified _LSCACQKRQS_ 0 0 0 ENST00000440909.5_1_14:94856807-94856912:-|nuORF ENST00000440909.5_1_14:94856807-94856912:-|nuORF ENST00000440909.5_1_14:94856807-94856912:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.205078125 3 375.183076 1122.5274 0.0177 6.6407E-06 -0.97053 -0.00036413 -0.95283 -0.00035749 375.182662863758 39.669 0.42235 37.13 36.796 37.218 -2.5398 13 11 2 0 0 0 0.91149 1 7032 7032 1.7423 0.089654 1 503510 28598 9888 19102 19109 28168 28168 -0.02896530425709898 LSCCCCCYP 9 Unmodified _LSCCCCCYP_ 0 0 0 REV__ENST00000377988.6_1_9:35829886-35834472:+|nuORF REV__ENST00000377988.6_1_9:35829886-35834472:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.00592041015625 3 332.1035 993.288672 NaN NaN NaN NaN NaN NaN NaN 26.047 1 26.047 25.547 26.547 0 0 0 0 0.23508 1 4547 4547 1.0715 0.80244 1 + 28599 21108 19103 19110 28169 28169 -0.20824093315377468 LSCDLVENCTY 11 Unmodified _LSCDLVENCTY_ 0 0 0 nc|ENSG00000130226|P42658-2|DPP6;ENSG00000130226|ENST00000377770|DPP6;ENST00000493268.1_1_7:154595624-154650193:+|nuORF nc|ENSG00000130226|P42658-2|DPP6;ENST00000493268.1_1_7:154595624-154650193:+|nuORF ENST00000493268.1_1_7:154595624-154650193:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7510375976562 2 630.267764 1258.52097 0.38813 0.00024462 0.3083 0.00019431 0.69643 0.00043893 630.269624806936 113.66 0.17986 113.66 113.51 113.69 0 5 4 2 0 0 0 0.74417 1 22322 22322 8.7454 3.5147 1 630820 28600 3593;10544 19104 19111 28170 28170 -0.09794513167753394 LSCDRQYHE 9 Unmodified _LSCDRQYHE_ 0 0 0 REV__TMCC1|p.Y491C|1|0.25|ENSG00000172765|chr3:129670369-129670369|T/C|missense_variant REV__TMCC1|p.Y491C|1|0.25|ENSG00000172765|chr3:129670369-129670369|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3278198242188 2 575.75093 1149.48731 0.31315 0.0001803 2.3682 0.0013635 2.6813 0.0015438 576.2531234229702 127.29 0.18473 122.5 122.34 122.52 -4.7958 5 4 2 0 0 0 0.79204 1 24424 24424 7.2892 0 1 1140500 + 28601 24810 19105 19112 28171 28171 -0.0814575382462408 LSCFSVLCPL 10 Unmodified _LSCFSVLCPL_ 0 0 0 REV__ENST00000456057.5_2_6:41757396-41757498:+|nuORF REV__ENST00000456057.5_2_6:41757396-41757498:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2739868164062 2 541.274664 1080.53477 NaN NaN NaN NaN NaN NaN NaN 145.48 1 140.54 140.04 141.04 -4.9445 0 0 0 0.22588 1 28129 28129 10.074 0.6908 1 + 28602 21851 19106 19113 28172 28172 -0.0022719087803579896 LSCLAGQLLYY 11 Unmodified _LSCLAGQLLYY_ 0 0 0 ENSG00000185156|ENST00000329805|MFSD6L ENSG00000185156|ENST00000329805|MFSD6L ENSG00000185156|ENST00000329805|MFSD6L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7813720703125 2 622.323199 1242.63185 NaN NaN NaN NaN NaN NaN NaN 126.19 1 121.54 121.04 122.04 -4.6495 0 0 0 0.22943 1 24277 24277 8.7454 0.83525 1 28603 6966 19107 19114 28173 28173 0.020234946026448597 LSCSDQLPPS 10 Unmodified _LSCSDQLPPS_ 0 0 0 REV__ENST00000382079.3_1_5:33989591-34020782:-|nuORF REV__ENST00000382079.3_1_5:33989591-34020782:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.693603515625 2 523.744782 1045.47501 NaN NaN NaN NaN NaN NaN NaN 123.38 1 118.65 118.15 119.15 -4.731 0 0 0 0.22588 1 23702 23702 10.074 1.4806 1 + 28604 21176 19108 19115 28174 28174 -0.045907902876933804 LSCSPLYLQH 10 Unmodified _LSCSPLYLQH_ 0 0 0 ENST00000584601.5_1_17:37844507-37851286:+|nuORF;ENST00000584014.5_1_17:37844516-37851033:+|nuORF ENST00000584601.5_1_17:37844507-37851286:+|nuORF ENST00000584601.5_1_17:37844507-37851286:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7117004394531 3 387.53047 1159.56958 NaN NaN NaN NaN NaN NaN NaN 35.66 1 33.266 32.766 33.766 -2.3938 0 0 0 0.22588 1 6570 6570 5.7834 0 1 28605 11519 19109 19116 28175 28175 -0.0038223174572067364 LSCWGTVTL 9 Unmodified _LSCWGTVTL_ 0 0 0 ROR2|p.S879Pfs*111|1|0.33|ENSG00000169071|chr9:91723860-91723860|G/-|frameshift_variant ROR2|p.S879Pfs*111|1|0.33|ENSG00000169071|chr9:91723860-91723860|G/-|frameshift_variant ROR2|p.S879Pfs*111|1|0.33|ENSG00000169071|chr9:91723860-91723860|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.264404296875 2 490.249503 978.484453 NaN NaN NaN NaN NaN NaN NaN 107.7 1 107.7 107.2 108.2 0 0 0 0 0.22251 1 21176 21176 16.942 2.104 1 28606 25619 19110 19117 28176 28176 -0.0056497721150208235 LSDALSIIK 9 Unmodified _LSDALSIIK_ 0 0 0 REV__nc|ENSG00000184677|Q9NUA8-2|ZBTB40 REV__nc|ENSG00000184677|Q9NUA8-2|ZBTB40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2421569824219 2 480.292225 958.569897 -0.031377 -1.507E-05 0.28821 0.00013843 0.25684 0.00012336 480.2922723541974 129.38 0.61295 129.38 129.09 129.71 0 30 17 2 0 0 0 0.39168 1 25615 25615 0.40827 0 1 5106200 + 28607 18910 19111 19118 28177 28177 0.08895511245827947 LSDALSIIK 9 Unmodified _LSDALSIIK_ 0 0 0 REV__nc|ENSG00000184677|Q9NUA8-2|ZBTB40 REV__nc|ENSG00000184677|Q9NUA8-2|ZBTB40 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.292225 958.569897 -0.031377 -1.507E-05 0.28821 0.00013843 0.25684 0.00012336 480.2922723541974 129.38 0.61295 129.38 129.09 129.71 0 0 0 NaN 0.40827 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 5106200 + 28608 18910 19111 19118 0.08895511245827947 LSDARTILEEN 11 Unmodified _LSDARTILEEN_ 0 0 0 ENSG00000130560|ENST00000371756|UBAC1 ENSG00000130560|ENST00000371756|UBAC1 ENSG00000130560|ENST00000371756|UBAC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7566528320312 2 630.825149 1259.63574 NaN NaN NaN NaN NaN NaN NaN 161.62 1 156.43 155.93 156.93 -5.1878 0 0 0 0.22765 1 31366 31366 10.151 2.5416 1 28609 3618 19112 19119 28178 28178 0.01631255630081796 LSDDDDAEAFY 11 Unmodified _LSDDDDAEAFY_ 0 0 0 REV__nc|ENSG00000151079|P17658|KCNA6 REV__nc|ENSG00000151079|P17658|KCNA6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7628173828125 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 169.64 1 164.71 164.21 165.21 -4.9295 0 0 0 0.23634 1 33503 33503 3.2813 0.54611 1 + 28610 24096 19113 19120 28179 28179 -0.1363698455722897 LSDEHVFEV 9 Unmodified _LSDEHVFEV_ 0 0 0 EPHX1|p.V285Rfs*24|1|0.42|ENSG00000143819|chr1:225839954-225839955|-/C|frameshift_variant;ENSG00000143819|ENST00000272167|EPHX1 EPHX1|p.V285Rfs*24|1|0.42|ENSG00000143819|chr1:225839954-225839955|-/C|frameshift_variant EPHX1|p.V285Rfs*24|1|0.42|ENSG00000143819|chr1:225839954-225839955|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 538.1504516601562 2 537.758746 1073.50294 0.047593 2.5594E-05 -1.4442 -0.00077663 -1.3966 -0.00075104 537.7583637375708 34.13 0.48643 31.812 31.563 32.049 -2.3175 15 13 2 0 0 0 0.79204 1 6244 6244 11.64 4.9171 1 359430 28611 4521 19114 19121 28180 28180 -0.03087144035930578 LSDEHVFEV 9 Unmodified _LSDEHVFEV_ 0 0 0 EPHX1|p.V285Rfs*24|1|0.42|ENSG00000143819|chr1:225839954-225839955|-/C|frameshift_variant;ENSG00000143819|ENST00000272167|EPHX1 EPHX1|p.V285Rfs*24|1|0.42|ENSG00000143819|chr1:225839954-225839955|-/C|frameshift_variant EPHX1|p.V285Rfs*24|1|0.42|ENSG00000143819|chr1:225839954-225839955|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 537.758746 1073.50294 0.40336 0.00021691 -2.2651 -0.0012181 -1.8617 -0.0010012 538.2587720495317 33.935 0.44879 31.788 31.6 32.048 -2.1468 -0.0040887 -0.00092571 NaN 11.64 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 442950 28612 4521 19114 19121 -0.03087144035930578 LSDEHVFEV 9 Unmodified _LSDEHVFEV_ 0 0 0 EPHX1|p.V285Rfs*24|1|0.42|ENSG00000143819|chr1:225839954-225839955|-/C|frameshift_variant;ENSG00000143819|ENST00000272167|EPHX1 EPHX1|p.V285Rfs*24|1|0.42|ENSG00000143819|chr1:225839954-225839955|-/C|frameshift_variant EPHX1|p.V285Rfs*24|1|0.42|ENSG00000143819|chr1:225839954-225839955|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 537.758746 1073.50294 0.45269 0.00024344 -0.85376 -0.00045912 -0.40107 -0.00021568 537.7582964433108 33.992 0.2822 31.776 31.633 31.915 -2.2158 -0.016136 0.00059219 NaN 11.64 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 319120 28613 4521 19114 19121 -0.03087144035930578 LSDEQIYLT 9 Unmodified _LSDEQIYLT_ 0 0 0 REV__ENST00000505736.5_1_4:137837332-138133925:-|nuORF REV__ENST00000505736.5_1_4:137837332-138133925:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2703247070312 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 147.31 1 142.31 141.81 142.81 -5 0 0 0 0.21065 1 28514 28514 20.454 1.1966 1 + 28614 22479 19115 19122 28181 28181 -0.0031399072172462184 LSDGDALRD 9 Unmodified _LSDGDALRD_ 0 0 0 REV__ENST00000431802.5_1_2:219526027-219526236:+|nuORF REV__ENST00000431802.5_1_2:219526027-219526236:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2324523925781 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 22.144 1 20.669 20.169 21.169 -1.4742 0 0 0 0.23508 1 3771 3771 9.3831 0 1 + 28615 21625 19116 19123 28182 28182 -0.030568877298605912 LSDGVHKI 8 Unmodified _LSDGVHKI_ 0 0 0 ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM ENST00000491175.1_1_3:138340270-138348004:+|nuORF ENST00000491175.1_1_3:138340270-138348004:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 434.914794921875 2 434.747985 867.481417 0.30246 0.00013149 -0.33818 -0.00014702 -0.035724 -1.5531E-05 434.747747386898 40.025 0.42196 40.025 39.895 40.316 0 18 11 2 0 0 0 0.99494 1 7424 7424 13.508 0 1 2062000 28616 5157 19117 19124 28183 28183 0.0423751572599258 LSDGVHKI 8 Unmodified _LSDGVHKI_ 0 0 0 ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM ENST00000491175.1_1_3:138340270-138348004:+|nuORF ENST00000491175.1_1_3:138340270-138348004:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 434.747985 867.481417 -0.26395 -0.00011475 0.17094 7.4317E-05 -0.093005 -4.0434E-05 434.7480303300075 42.604 0.39366 39.885 39.733 40.127 -2.7191 -0.064716 0.00011999 NaN 13.508 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2995100 28617 5157 19117 19124 0.0423751572599258 LSDGVHKI 8 Unmodified _LSDGVHKI_ 0 0 0 ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM ENST00000491175.1_1_3:138340270-138348004:+|nuORF ENST00000491175.1_1_3:138340270-138348004:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 434.747985 867.481417 -0.091901 -3.9954E-05 0.026924 1.1705E-05 -0.064977 -2.8249E-05 434.74796001757653 42.589 0.41711 39.938 39.778 40.195 -2.651 -0.011887 -5.2348E-06 NaN 13.508 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3373800 28618 5157 19117 19124 0.0423751572599258 LSDGVHKI 8 Unmodified _LSDGVHKI_ 0 0 0 ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM ENST00000491175.1_1_3:138340270-138348004:+|nuORF ENST00000491175.1_1_3:138340270-138348004:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 434.747985 867.481417 -0.19754 -8.588E-05 0.19214 8.3533E-05 -0.0053998 -2.3476E-06 434.7479571247754 42.557 0.3889 39.951 39.788 40.176 -2.606 0.0013026 0.00013842 NaN 13.508 20 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2349000 28619 5157 19117 19124 0.0423751572599258 LSDIERAVY 9 Unmodified _LSDIERAVY_ 0 0 0 ENSG00000119698|ENST00000304338|PPP4R4;nc|ENSG00000119698|Q6NUP7-2|PPP4R4;ENST00000555690.5_1_14:94640802-94696957:+|nuORF;PPP4R4|p.T186Nfs*8|1|0.1|ENSG00000119698|chr14:94233689-94233690|-/A|frameshift_variant;PPP4R4|p.S250Vfs*7|1|0.39|ENSG00000119698|chr14:94237577-94237577|A/-|frameshift_variant ENSG00000119698|ENST00000304338|PPP4R4 ENSG00000119698|ENST00000304338|PPP4R4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2822265625 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 84.013 1 80.103 79.603 80.603 -3.9093 0 0 0 0.078697 1 15967 15967 42.312 8.21 1 28620 3094 19118 19125 28184 28184 0.020531352350417365 LSDIERAVY 9 Unmodified _LSDIERAVY_ 0 0 0 ENSG00000119698|ENST00000304338|PPP4R4;nc|ENSG00000119698|Q6NUP7-2|PPP4R4;ENST00000555690.5_1_14:94640802-94696957:+|nuORF;PPP4R4|p.T186Nfs*8|1|0.1|ENSG00000119698|chr14:94233689-94233690|-/A|frameshift_variant;PPP4R4|p.S250Vfs*7|1|0.39|ENSG00000119698|chr14:94237577-94237577|A/-|frameshift_variant ENSG00000119698|ENST00000304338|PPP4R4 ENSG00000119698|ENST00000304338|PPP4R4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2818603515625 2 533.282389 1064.55022 -0.0039677 -2.1159E-06 1.8058 0.00096302 1.8019 0.00096091 533.2824697228311 83.686 0.5292 79.988 79.795 80.324 -3.6985 17 14 2 0 0 0 0.25976 2 15974 15974;16003 24.882 24.754 1 959620 28621 3094 19118 19125 28185;28186 28185 0.020531352350417365 LSDIGLEY 8 Unmodified _LSDIGLEY_ 0 0 0 ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant;ADNP|p.A1012Sfs*11|1|0.25|ENSG00000101126|chr20:50891681-50891682|-/G|frameshift_variant;ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP;ADNP|p.K659Sfs*17|1|0.38|ENSG00000101126|chr20:50892738-50892738|T/-|frameshift_variant ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.4042358398438 1 909.45639 908.449113 0.42936 0.00039049 -0.25408 -0.00023107 0.17529 0.00015941 909.45592781011 123.14 0.76331 118.55 118.2 118.96 -4.5926 51 21 3 0 0 0 0.17453 1 23650 23650 48.346 3.9388 1 12687000 28622 85 19119 19126 28187 28187 -0.008773164676654233 LSDIGSGIRY 10 Unmodified _LSDIGSGIRY_ 0 0 0 CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant;ENSG00000213341|ENST00000370397|CHUK CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2796630859375 2 540.787838 1079.56112 0.15943 8.6219E-05 0.11243 6.0803E-05 0.27187 0.00014702 540.7878966544818 89.51 1.2245 89.51 89.034 90.259 0 99 34 5 0 0 0 9.737700000000002E-19 1 17462 17462 176.43 7.8895 1 227850000 28623 559 19120 19127 28188 28188 0.024525376093379236 LSDIGSGIRY 10 Unmodified _LSDIGSGIRY_ 0 0 0 CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant;ENSG00000213341|ENST00000370397|CHUK CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2655029296875 2 540.787838 1079.56112 0.20482 0.00011076 -0.28154 -0.00015226 -0.076727 -4.1493E-05 540.7877589325527 93.528 0.99625 89.537 89.075 90.071 -3.9907 94 28 5 0 0 0 9.9541E-28 1 18325 18325 197.81 21.379 1 256930000 28624 559 19120 19127 28189 28189 0.024525376093379236 LSDIGSGIRY 10 Unmodified _LSDIGSGIRY_ 0 0 0 CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant;ENSG00000213341|ENST00000370397|CHUK CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2665405273438 2 540.787838 1079.56112 0.14428 7.8026E-05 -0.42065 -0.00022748 -0.27637 -0.00014946 540.7876847107293 93.399 1.1741 89.555 89.054 90.228 -3.844 100 33 5 0 0 0 2.9528E-08 1 17867 17867 160.69 16.78 1 210370000 28625 559 19120 19127 28190 28190 0.024525376093379236 LSDIQPHEVY 10 Unmodified _LSDIQPHEVY_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2998657226562 2 600.798403 1199.58225 0.38442 0.00023096 -0.23288 -0.00013991 0.15154 9.1045E-05 600.7982856581106 124.24 0.73164 124.24 123.81 124.54 0 70 20 4 0 0 0 0.5575 1 24472 24472 21.537 3.3906 1 22731000 + 28626 23644 19121 19128 28191 28191 -0.00955497081804424 LSDIQPHEVY 10 Unmodified _LSDIQPHEVY_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2847900390625 2 600.798403 1199.58225 1.0127 0.00060842 -0.77425 -0.00046517 0.23844 0.00014325 600.7978896200378 128.66 0.81995 124.03 123.58 124.4 -4.6292 73 22 4 0 0 0 0.44731 1 25374 25374 27.629 0.74515 1 21784000 + 28627 23644 19121 19128 28192 28192 -0.00955497081804424 LSDKEEAK 8 Unmodified _LSDKEEAK_ 0 0 0 REV__nc|ENSG00000140332|Q04726-4|TLE3 REV__nc|ENSG00000140332|Q04726-4|TLE3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23907470703125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 98.593 1 94.324 93.824 94.824 -4.2692 0 0 0 0.22692 1 18849 18849 2.643 1.9616 1 + 28628 24069 19122 19129 28193 28193 0.0033318441828669165 LSDKHKEP 8 Unmodified _LSDKHKEP_ 0 0 0 REV__ENSG00000266412|ENST00000581486|NCOA4 REV__ENSG00000266412|ENST00000581486|NCOA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73211669921875 2 477.256174 952.497795 0.058678 2.8004E-05 -0.48719 -0.00023252 -0.42852 -0.00020451 477.25600275969384 63.052 0.74959 60.055 59.67 60.42 -2.9975 52 21 4 0 0 0 0.56049 1 12166 12166 24.674 2.9272 1 14307000 + 28629 19902 19123 19130 28194 28194 0.019645968920940504 LSDKHKEP 8 Unmodified _LSDKHKEP_ 0 0 0 REV__ENSG00000266412|ENST00000581486|NCOA4 REV__ENSG00000266412|ENST00000581486|NCOA4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.256174 952.497795 0.058678 2.8004E-05 -0.48719 -0.00023252 -0.42852 -0.00020451 477.25600275969384 63.052 0.74959 60.055 59.67 60.42 -2.9975 -0.080138 -0.00015448 NaN 24.674 52 21 4 NaN NaN NaN NaN 0 NaN NaN 0 14307000 + 28630 19902 19123 19130 0.019645968920940504 LSDKHKEP 8 Unmodified _LSDKHKEP_ 0 0 0 REV__ENSG00000266412|ENST00000581486|NCOA4 REV__ENSG00000266412|ENST00000581486|NCOA4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.256174 952.497795 0.15358 7.3296E-05 -0.092288 -4.4045E-05 0.061291 2.9251E-05 477.25605428411336 63.59 0.77668 60.175 59.644 60.421 -3.4158 0.039607 0.00022246 NaN 24.674 56 21 5 NaN NaN NaN NaN 0 NaN NaN 0 12472000 + 28631 19902 19123 19130 0.019645968920940504 LSDKHKEP 8 Unmodified _LSDKHKEP_ 0 0 0 REV__ENSG00000266412|ENST00000581486|NCOA4 REV__ENSG00000266412|ENST00000581486|NCOA4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.256174 952.497795 0.26449 0.00012623 -0.35811 -0.00017091 -0.093615 -4.4678E-05 477.25601119594313 63.432 0.7585 60.176 59.709 60.468 -3.2567 0.040531 -3.1265E-05 NaN 24.674 57 21 4 NaN NaN NaN NaN 0 NaN NaN 0 14434000 + 28632 19902 19123 19130 0.019645968920940504 LSDKRSFT 8 Unmodified _LSDKRSFT_ 0 0 0 REV__nc|ENSG00000197128|Q68DY9-2|ZNF772 REV__nc|ENSG00000197128|Q68DY9-2|ZNF772 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7219543457031 2 477.256174 952.497795 0.15358 7.3296E-05 -0.092288 -4.4045E-05 0.061291 2.9251E-05 477.25605428411336 63.59 0.77668 60.175 59.644 60.421 -3.4158 56 21 5 0 0 0 0.70613 1 11913 11913 13.508 0.97634 1 12472000 + 28633 19309 19124 19131 28195 28195 0.019645968920940504 LSDLEKYTQY 10 Unmodified _LSDLEKYTQY_ 0 0 0 REV__ENSG00000085831|ENST00000680483|TTC39A REV__ENSG00000085831|ENST00000680483|TTC39A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7496337890625 2 630.311343 1258.60813 NaN NaN NaN NaN NaN NaN NaN 94.868 1 90.818 90.318 91.318 -4.0496 0 0 0 0.22552 1 18594 18594 18.146 5.9057 1 + 28634 14478 19125 19132 28196 28196 -0.01082647630187239 LSDLFHLF 8 Unmodified _LSDLFHLF_ 0 0 0 REV__L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|115|2|anti-sense REV__L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|115|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 496.26666259765625 2 496.26601 990.517468 NaN NaN NaN NaN NaN NaN NaN 163.11 1 163.11 162.61 163.61 0 0 0 0 0.2074 1 32851 32851 19.439 0 1 + 28635 23758 19126 19133 28197 28197 0.021829729028468137 LSDLGSGIYR 10 Unmodified _LSDLGSGIYR_ 0 0 0 tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1 tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1 tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2799682617188 2 540.787838 1079.56112 0.2998 0.00016213 -0.51151 -0.00027662 -0.21171 -0.00011449 540.787628474132 93.663 1.2631 89.52 89.049 90.312 -4.1435 99 36 5 0 0 0 0.11758 1 17920 17920 55.235 0 1 225550000 28636 26196 19127 19134 28198 28198 0.024525376093379236 LSDLIEKNL 9 Unmodified _LSDLIEKNL_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27880859375 2 522.800414 1043.58628 0.1913 0.00010001 -0.78428 -0.00041002 -0.59298 -0.00031001 522.800180425313 122.87 0.69743 122.87 122.51 123.2 0 30 19 2 0 0 0 0.60663 1 24162 24162 20.415 3.3016 1 3027100 28637 2798 19128 19135 28199 28199 0.06622592411895312 LSDLIEKNL 9 Unmodified _LSDLIEKNL_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2794799804688 2 522.800414 1043.58628 -0.11258 -5.8858E-05 -0.038344 -2.0046E-05 -0.15093 -7.8904E-05 522.8004909403624 126.85 0.73409 122.23 121.94 122.68 -4.6172 35 20 2 0 0 0 0.73481 1 25073 25073 14.405 1.5328 1 3232700 28638 2798 19128 19135 28200 28200 0.06622592411895312 LSDLIEKNL 9 Unmodified _LSDLIEKNL_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2794189453125 2 522.800414 1043.58628 -0.43532 -0.00022759 0.4392 0.00022962 0.0038786 2.0277E-06 522.8006767042705 127.23 0.70897 122.43 122.03 122.73 -4.7958 31 19 2 0 0 0 0.089388 1 24425 24425 66.457 2.4962 1 4160100 28639 2798 19128 19135 28201 28201 0.06622592411895312 LSDLKHMRY 9 Oxidation (M) _LSDLKHM(Oxidation (M))RY_ LSDLKHM(1)RY LSDLKHM(52)RY 0 0 1 HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant;HAUS6|p.N492Mfs*50|1|0.4|ENSG00000147874|chr9:19063162-19063162|T/-|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-2|HAUS6;ENSG00000147874|ENST00000380502|HAUS6 HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2693481445312 2 589.802965 1177.59138 0.55582 0.00032782 -0.28661 -0.00016904 0.2692 0.00015878 589.8026405163432 26.475 0.24402 24.84 24.685 24.929 -1.6347 10 6 2 0 0 0 0.11219 1 4399 4399 51.63 26.639 1 591400 28640 4721 19129 19136 28202 28202 74 0.009685730028650141 LSDLKHMRY 9 Oxidation (M) _LSDLKHM(Oxidation (M))RY_ 0 0 1 HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant;HAUS6|p.N492Mfs*50|1|0.4|ENSG00000147874|chr9:19063162-19063162|T/-|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-2|HAUS6;ENSG00000147874|ENST00000380502|HAUS6 HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 589.802965 1177.59138 0.39087 0.00023053 -0.48315 -0.00028496 -0.092287 -5.4431E-05 589.8026972025419 24.813 0.33179 24.813 24.615 24.947 0 -0.013894 0.00026635 NaN 51.63 17 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1346700 28641 4721 19129 19136 74 0.009685730028650141 LSDLKHMRY 9 Oxidation (M) _LSDLKHM(Oxidation (M))RY_ 0 0 1 HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant;HAUS6|p.N492Mfs*50|1|0.4|ENSG00000147874|chr9:19063162-19063162|T/-|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-2|HAUS6;ENSG00000147874|ENST00000380502|HAUS6 HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 589.802965 1177.59138 1.5049 0.0008876 -2.0346 -0.0012 -0.52967 -0.0003124 590.302885389435 26.61 0.23867 24.828 24.655 24.894 -1.7821 0.00075731 -0.0015637 NaN 51.63 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 570080 28642 4721 19129 19136 74 0.009685730028650141 LSDLKHMRY 9 Unmodified _LSDLKHMRY_ 0 0 0 HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant;HAUS6|p.N492Mfs*50|1|0.4|ENSG00000147874|chr9:19063162-19063162|T/-|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-2|HAUS6;ENSG00000147874|ENST00000380502|HAUS6 HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7243347167969 3 388.206098 1161.59646 0.03986 1.5474E-05 -0.071711 -2.7839E-05 -0.031851 -1.2365E-05 388.20618717299243 51.975 0.80017 48.929 48.576 49.376 -3.0453 83 22 5 0 0 0 0.26627 1 9559 9559 38.615 19.894 1 28894000 28643 4721 19129 19137 28203 28203 0.022128768654965825 LSDLKHMRY 9 Unmodified _LSDLKHMRY_ 0 0 0 HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant;HAUS6|p.N492Mfs*50|1|0.4|ENSG00000147874|chr9:19063162-19063162|T/-|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-2|HAUS6;ENSG00000147874|ENST00000380502|HAUS6 HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 388.206098 1161.59646 0.17316 6.7222E-05 -0.24882 -9.6593E-05 -0.075659 -2.9371E-05 388.20613686652405 48.967 0.67182 48.967 48.628 49.3 0 0.041439 -0.00027006 NaN 38.615 58 18 4 NaN NaN NaN NaN 0 NaN NaN 0 39795000 28644 4721 19129 19137 0.022128768654965825 LSDLKHMRY 9 Unmodified _LSDLKHMRY_ 0 0 0 HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant;HAUS6|p.N492Mfs*50|1|0.4|ENSG00000147874|chr9:19063162-19063162|T/-|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-2|HAUS6;ENSG00000147874|ENST00000380502|HAUS6 HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 388.206098 1161.59646 -0.38732 -0.00015036 0.34386 0.00013349 -0.043461 -1.6872E-05 388.2063039340523 51.763 0.88501 48.881 48.493 49.378 -2.8824 -0.045011 0.00042019 NaN 38.615 94 25 5 NaN NaN NaN NaN 0 NaN NaN 0 29404000 28645 4721 19129 19137 0.022128768654965825 LSDLKHMSL 9 Unmodified _LSDLKHMSL_ 0 0 0 nc|ENSG00000147874|Q7Z4H7-3|HAUS6 nc|ENSG00000147874|Q7Z4H7-3|HAUS6 nc|ENSG00000147874|Q7Z4H7-3|HAUS6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2819213867188 2 522.281334 1042.54812 NaN NaN NaN NaN NaN NaN NaN 131.91 1 127.05 126.55 127.55 -4.8527 0 0 0 0.21469 1 25334 25334 19.257 2.1441 1 28646 12375 19130 19138 28204 28204 0.02854383225599122 LSDLLCYIF 9 Unmodified _LSDLLCYIF_ 0 0 0 REV__nc|ENSG00000109163|P30968-2|GNRHR REV__nc|ENSG00000109163|P30968-2|GNRHR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77685546875 2 543.780636 1085.54672 NaN NaN NaN NaN NaN NaN NaN 157.49 1 152.22 151.72 152.72 -5.2712 0 0 0 0.23411 1 30550 30550 13.508 0 1 + 28647 23997 19131 19139 28205 28205 0.007367491368086121 LSDLNLGAA 9 Unmodified _LSDLNLGAA_ 0 0 0 REV__SLC9C2|p.V282A|1|0.25|ENSG00000162753|chr1:173576718-173576718|A/G|missense_variant REV__SLC9C2|p.V282A|1|0.25|ENSG00000162753|chr1:173576718-173576718|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23077392578125 2 437.23745 872.460347 0.044696 1.9543E-05 0.4538 0.00019842 0.4985 0.00021796 437.23747079541465 37.678 0.38118 35.34 35.05 35.431 -2.3375 12 10 2 0 0 0 0.36034 1 6676 6676 36.127 7.0454 1 280360 + 28648 24652 19132 19140 28206 28206 0.01901505626483413 LSDLREYRRFE 11 Unmodified _LSDLREYRRFE_ 0 0 0 ENST00000479202.5_1_21:46306285-46309037:-|nuORF;ENST00000498666.5_1_21:46306285-46312915:-|nuORF;ENST00000475170.5_1_21:46306285-46313576:-|nuORF;ENSG00000160255|ENST00000652462|ITGB2 ENST00000479202.5_1_21:46306285-46309037:-|nuORF ENST00000479202.5_1_21:46306285-46309037:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3843994140625 2 742.386239 1482.75793 NaN NaN NaN NaN NaN NaN NaN 118.16 1 113.66 113.16 114.16 -4.502 0 0 0 0.22632 1 23292 23292 0.0059557 0 1 28649 5241 19133 19141 28207 28207 0.0358571743227003 LSDLTYIDSAY 11 Unmodified _LSDLTYIDSAY_ 0 0 0 nc|ENSG00000116191|Q86X27-2|RALGPS2;ENST00000495034.5_1_1:178745899-178848128:+|nuORF;RALGPS2|p.K475Sfs*4|1|0.39|ENSG00000116191|chr1:178894013-178894013|A/-|frameshift_variant;nc|ENSG00000116191|Q86X27-3|RALGPS2;ENSG00000116191|ENST00000367635|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7747802734375 2 630.803351 1259.59215 NaN NaN NaN NaN NaN NaN NaN 115.87 1 115.87 115.37 116.37 0 0 0 0 0.23324 1 22811 22811 5.7319 0.43497 1 28650 2914 19134 19142 28208 28208 -0.027263538670695198 LSDMSFGSL 9 Unmodified _LSDMSFGSL_ 0 0 0 ABCA12|p.T913Sfs*16|1|0.03|ENSG00000144452|chr2:215001683-215001684|-/C|frameshift_variant;ABCA12|p.I957Sfs*3|1|0.24|ENSG00000144452|chr2:215001014-215001015|-/C|frameshift_variant;ABCA12|p.N1173Kfs*27|1|0.28|ENSG00000144452|chr2:214990807-214990808|-/T|frameshift_variant;ABCA12|p.T1534Nfs*8|1|0.1|ENSG00000144452|chr2:214980622-214980623|-/T|frameshift_variant;ABCA12|p.N1671Kfs*2|1|0.24|ENSG00000144452|chr2:214978431-214978432|-/T|frameshift_variant;ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant;ABCA12|p.F2109Lfs*25|2|0.16|ENSG00000144452|chr2:214955268-214955268|A/-|frameshift_variant;nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12 ABCA12|p.T913Sfs*16|1|0.03|ENSG00000144452|chr2:215001683-215001684|-/C|frameshift_variant ABCA12|p.T913Sfs*16|1|0.03|ENSG00000144452|chr2:215001683-215001684|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7232666015625 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 63.031 1 60.033 59.533 60.533 -2.9975 0 0 0 0.20155 1 12169 12169 23.148 2.2772 1 28651 7 19135 19143 28209 28209 -0.047415603450986055 LSDPVFCHY 9 Unmodified _LSDPVFCHY_ 0 0 0 REV__ENST00000396842.6_1_3:15481697-15481937:+|nuORF REV__ENST00000396842.6_1_3:15481697-15481937:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2655639648438 2 540.744585 1079.47462 1.3493 0.0007296 0.93974 0.00050816 2.289 0.0012378 540.7450283422758 26.045 0.75396 24.397 24.14 24.894 -1.6482 79 21 5 0 0 0 0.46541 1 4637 4637 21.747 21.747 1 82360000 + 28652 21287 19136 19144 28210 28210 -0.0619416521687981 LSDREPLRL 9 Unmodified _LSDREPLRL_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K142Rfs*26|1|0.07|ENSG00000162434|chr1:64873428-64873428|T/-|frameshift_variant;JAK1|p.N339Ifs*3|2|0.36|ENSG00000162434|chr1:64864947-64864947|T/-|frameshift_variant;JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.49810791015625 3 366.880379 1097.61931 -0.87001 -0.00031919 0.84041 0.00030833 -0.029606 -1.0862E-05 366.88064170812015 80.581 0.62794 76.893 76.411 77.039 -3.6879 20 17 2 0 0 0 0.35556 1 15353 15353 12.241 4.0851 1 888640 28653 5334 19137 19145 28211 28211 0.07440219254613112 LSDREPLRL 9 Unmodified _LSDREPLRL_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K142Rfs*26|1|0.07|ENSG00000162434|chr1:64873428-64873428|T/-|frameshift_variant;JAK1|p.N339Ifs*3|2|0.36|ENSG00000162434|chr1:64864947-64864947|T/-|frameshift_variant;JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 366.880379 1097.61931 -0.22108 -8.1112E-05 0.37187 0.00013643 0.15079 5.5321E-05 366.8803971224699 80.302 0.56398 76.792 76.51 77.074 -3.5102 -0.084492 2.1267E-05 NaN 12.241 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1634900 28654 5334 19137 19145 0.07440219254613112 LSDREPLRL 9 Unmodified _LSDREPLRL_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K142Rfs*26|1|0.07|ENSG00000162434|chr1:64873428-64873428|T/-|frameshift_variant;JAK1|p.N339Ifs*3|2|0.36|ENSG00000162434|chr1:64864947-64864947|T/-|frameshift_variant;JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 366.880379 1097.61931 -0.014492 -5.3167E-06 -0.11797 -4.3282E-05 -0.13247 -4.8599E-05 366.8803075109352 80.784 0.65907 76.945 76.498 77.157 -3.8392 0.06802 -0.00051788 NaN 12.241 24 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1247500 28655 5334 19137 19145 0.07440219254613112 LSDSEKELY 9 Unmodified _LSDSEKELY_ 0 0 0 ENST00000373899.3_1_10:60146421-60154831:+|nuORF;nc|ENSG00000108064|Q00059-2|TFAM;ENSG00000108064|ENST00000487519|TFAM ENST00000373899.3_1_10:60146421-60154831:+|nuORF ENST00000373899.3_1_10:60146421-60154831:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7823486328125 2 542.263862 1082.51317 0.19508 0.00010579 -0.30007 -0.00016272 -0.10499 -5.6931E-05 542.2636549146415 76.529 1.1932 73.114 72.679 73.873 -3.4151 110 33 5 0 0 0 0.60805 1 14888 14888 12.532 0 1 131330000 28656 2457 19138 19146 28212 28212 -0.024785811013543935 LSDSFSDLY 9 Unmodified _LSDSFSDLY_ 0 0 0 NDC1|p.F169Sfs*3|2|0.37|ENSG00000058804|chr1:53825886-53825886|A/-|frameshift_variant;nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1 NDC1|p.F169Sfs*3|2|0.37|ENSG00000058804|chr1:53825886-53825886|A/-|frameshift_variant NDC1|p.F169Sfs*3|2|0.37|ENSG00000058804|chr1:53825886-53825886|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.701904296875 2 523.73748 1045.46041 0.18318 9.5936E-05 0.085662 4.4864E-05 0.26884 0.0001408 523.7374423715034 133.67 0.86763 133.67 133.24 134.11 0 57 24 3 0 0 0 0.033228 1 26485 26485 77.984 35.016 1 16581000 28657 1295 19139 19147 28213 28213 -0.06050539164152724 LSDSFSDLY 9 Unmodified _LSDSFSDLY_ 0 0 0 NDC1|p.F169Sfs*3|2|0.37|ENSG00000058804|chr1:53825886-53825886|A/-|frameshift_variant;nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1 NDC1|p.F169Sfs*3|2|0.37|ENSG00000058804|chr1:53825886-53825886|A/-|frameshift_variant NDC1|p.F169Sfs*3|2|0.37|ENSG00000058804|chr1:53825886-53825886|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6854248046875 2 523.73748 1045.46041 -0.14634 -7.6645E-05 0.30799 0.00016131 0.16165 8.4663E-05 523.7375591719345 138.72 0.91554 134.08 133.67 134.58 -4.6439 70 25 4 0 0 0 0.0076257 1 27422 27422 109.63 52.158 1 22035000 28658 1295 19139 19147 28214 28214 -0.06050539164152724 LSDSFSDLY 9 Unmodified _LSDSFSDLY_ 0 0 0 NDC1|p.F169Sfs*3|2|0.37|ENSG00000058804|chr1:53825886-53825886|A/-|frameshift_variant;nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1 NDC1|p.F169Sfs*3|2|0.37|ENSG00000058804|chr1:53825886-53825886|A/-|frameshift_variant NDC1|p.F169Sfs*3|2|0.37|ENSG00000058804|chr1:53825886-53825886|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6881103515625 2 523.73748 1045.46041 -0.47119 -0.00024678 0.59301 0.00031058 0.12181 6.3797E-05 523.7377890776012 139.01 0.8938 134.06 133.6 134.49 -4.952 61 24 3 0 0 0 1.2995E-06 3 26751 26751;26759;26813 105.38 68.878 1 17524000 28659 1295 19139 19147 28215;28216;28217 28215 -0.06050539164152724 LSDSFSDLY 9 Unmodified _LSDSFSDLY_ 0 0 0 NDC1|p.F169Sfs*3|2|0.37|ENSG00000058804|chr1:53825886-53825886|A/-|frameshift_variant;nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1 NDC1|p.F169Sfs*3|2|0.37|ENSG00000058804|chr1:53825886-53825886|A/-|frameshift_variant NDC1|p.F169Sfs*3|2|0.37|ENSG00000058804|chr1:53825886-53825886|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.698486328125 2 523.73748 1045.46041 0.30234 0.00015835 -0.13256 -6.9425E-05 0.16978 8.8922E-05 523.7373711612933 138.9 0.88565 134.05 133.61 134.49 -4.8492 68 24 4 0 0 0 0.029432 1 26746 26746 97.075 62.887 1 23421000 28660 1295 19139 19147 28218 28218 -0.06050539164152724 LSDSILGEQ 9 Unmodified _LSDSILGEQ_ 0 0 0 TMEM132A|p.R959Gfs*5|1|0.33|ENSG00000006118|chr11:60936704-60936704|G/-|frameshift_variant;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A;nc|ENSG00000006118|Q24JP5-4|TMEM132A TMEM132A|p.R959Gfs*5|1|0.33|ENSG00000006118|chr11:60936704-60936704|G/-|frameshift_variant TMEM132A|p.R959Gfs*5|1|0.33|ENSG00000006118|chr11:60936704-60936704|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2450866699219 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 91.212 1 87.403 86.903 87.903 -3.8083 0 0 0 0.04451 1 17460 17460 54.774 6.4277 1 28661 1005 19140 19148 28219 28219 -0.005428329272717747 LSDSQPSHS 9 Unmodified _LSDSQPSHS_ 0 0 0 REV__ENSG00000165959|ENST00000298912|CLMN REV__ENSG00000165959|ENST00000298912|CLMN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73211669921875 2 479.217246 956.419939 0.082323 3.9451E-05 1.1521 0.00055209 1.2344 0.00059154 479.2177367413337 62.963 0.77932 60.001 59.641 60.42 -2.9614 63 22 4 0 0 0 0.23744 1 12166 12166 52.268 0 1 17458000 + 28662 17812 19141 19149 28220 28220 -0.06001460763934574 LSDSQPSHS 9 Unmodified _LSDSQPSHS_ 0 0 0 REV__ENSG00000165959|ENST00000298912|CLMN REV__ENSG00000165959|ENST00000298912|CLMN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7232360839844 2 479.217246 956.419939 0.17283 8.2824E-05 1.077 0.00051613 1.2499 0.00059895 479.2177632328902 63.418 0.73958 60.002 59.682 60.421 -3.4158 67 20 5 0 0 0 0.23744 1 11860 11860 52.268 0 1 19834000 + 28663 17812 19141 19149 28221 28221 -0.06001460763934574 LSDTNVLVPPP 11 Unmodified _LSDTNVLVPPP_ 0 0 0 REV__DLG1|p.N376Lfs*12|1|0.2|ENSG00000075711|chr3:197130665-197130666|-/TGCTTAA|frameshift_variant REV__DLG1|p.N376Lfs*12|1|0.2|ENSG00000075711|chr3:197130665-197130666|-/TGCTTAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.319091796875 2 576.318971 1150.62339 0.10888 6.2751E-05 0.080767 4.6547E-05 0.18965 0.0001093 576.3190301527702 80.982 0.77621 77.143 76.767 77.543 -3.8392 64 21 4 0 0 0 0.43824 1 15381 15381 29.841 0 1 13014000 + 28664 13690 19142 19150 28222 28222 0.054102639576967704 LSDVDAFIAY 10 Unmodified _LSDVDAFIAY_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 557.4994506835938 2 557.276772 1112.53899 0.19477 0.00010854 0.39923 0.00022248 0.594 0.00033102 557.2768244414945 163.72 0.34988 158.68 158.44 158.79 -5.0446 12 9 2 0 0 0 0.82094 1 31856 31856 21.747 3.6117 1 8163000 28665 3322 19143 19151 28223 28223 -0.012776868590890444 LSDVGWPV 8 Unmodified _LSDVGWPV_ 0 0 0 REV__ENSG00000075618|ENST00000382361|FSCN1 REV__ENSG00000075618|ENST00000382361|FSCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2294921875 2 436.729261 871.443968 -0.043306 -1.8913E-05 -1.9441 -0.00084906 -1.9874 -0.00086797 436.7284328949964 40.273 0.38624 37.733 37.429 37.815 -2.5398 17 10 2 0 0 0 8448 1 7213 7213 6.1918 0 1 1678300 + 28666 14334 19144 19152 28224 28224 0.00310424460383274 LSDVGWPV 8 Unmodified _LSDVGWPV_ 0 0 0 REV__ENSG00000075618|ENST00000382361|FSCN1 REV__ENSG00000075618|ENST00000382361|FSCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2300720214844 2 436.729261 871.443968 -0.070682 -3.0869E-05 -0.99842 -0.00043604 -1.0691 -0.00046691 436.728845165614 40.207 0.52975 37.717 37.301 37.83 -2.4896 26 14 2 0 0 0 0.14825 1 7193 7193 53.576 6.6547 1 792360 + 28667 14334 19144 19152 28225 28225 0.00310424460383274 LSDVLVKQY 9 Unmodified _LSDVLVKQY_ 0 0 0 ENST00000380359.3_1_10:5493865-5494450:+|nuORF ENST00000380359.3_1_10:5493865-5494450:+|nuORF ENST00000380359.3_1_10:5493865-5494450:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2826538085938 2 532.802957 1063.59136 0.0046683 2.4873E-06 0.010971 5.8454E-06 0.015639 8.3327E-06 532.8029449405251 90.458 0.38666 86.599 86.334 86.721 -3.8595 16 10 2 0 0 0 0.19359 1 17681 17681 47.749 2.0491 1 1043600 28668 9315 19145 19153 28226 28226 0.0621089627454694 LSDVLVKQY 9 Unmodified _LSDVLVKQY_ 0 0 0 ENST00000380359.3_1_10:5493865-5494450:+|nuORF ENST00000380359.3_1_10:5493865-5494450:+|nuORF ENST00000380359.3_1_10:5493865-5494450:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.282470703125 2 532.802957 1063.59136 0.73916 0.00039382 -1.2557 -0.00066904 -0.51654 -0.00027521 532.802216022932 90.656 0.52226 86.612 86.34 86.862 -4.0443 18 14 2 0 0 0 0.60663 1 17271 17271 32.786 6.5175 1 853750 28669 9315 19145 19153 28227 28227 0.0621089627454694 LSDVLVKQY 9 Unmodified _LSDVLVKQY_ 0 0 0 ENST00000380359.3_1_10:5493865-5494450:+|nuORF ENST00000380359.3_1_10:5493865-5494450:+|nuORF ENST00000380359.3_1_10:5493865-5494450:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2824096679688 2 532.802957 1063.59136 0.21617 0.00011517 0.19836 0.00010568 0.41452 0.00022086 532.8029398036748 90.333 0.45359 86.555 86.293 86.746 -3.7779 18 12 2 0 0 0 0.11402 1 17278 17278 51.63 24.001 1 1296500 28670 9315 19145 19153 28228 28228 0.0621089627454694 LSDYACTRHS 10 Unmodified _LSDYACTRHS_ 0 0 0 REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3377075195312 2 576.758755 1151.50296 NaN NaN NaN NaN NaN NaN NaN 115.01 1 110.53 110.03 111.03 -4.4726 0 0 0 0.22576 1 22666 22666 14.838 1.7958 1 + 28671 13614 19146 19154 28229 28229 -0.06673467307587089 LSDYACTRHS 10 Unmodified _LSDYACTRHS_ 0 0 0 REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3135986328125 2 576.758755 1151.50296 -0.003999 -2.3065E-06 2.3391 0.0013491 2.3351 0.0013468 576.7588705595534 114.86 0.17127 110.39 110.29 110.46 -4.4726 6 4 2 0 0 0 0.871 1 22631 22631 10.074 0.6908 1 1184200 + 28672 13614 19146 19154 28230 28230 -0.06673467307587089 LSDYLRTQR 9 Unmodified _LSDYLRTQR_ 0 0 0 ENST00000519749.1_1_5:156668627-156672902:+|nuORF;ENST00000519402.5_1_5:156668627-156679685:+|nuORF;ITK|p.E468Vfs*37|1|0.42|ENSG00000113263|chr5:157244423-157244424|-/TG|frameshift_variant;ENSG00000113263|ENST00000422843|ITK ENST00000519749.1_1_5:156668627-156672902:+|nuORF ENST00000519749.1_1_5:156668627-156672902:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3223266601562 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 114.98 1 110.66 110.16 111.16 -4.3136 0 0 0 0.21469 1 22136 22136 19.257 3.4098 1 28673 2731 19147 19155 28231 28231 0.04019031249231375 LSEAPAGRMI 10 Unmodified _LSEAPAGRMI_ 0 0 0 ENST00000483841.2_1_2:202545559-202558746:-|nuORF ENST00000483841.2_1_2:202545559-202558746:-|nuORF ENST00000483841.2_1_2:202545559-202558746:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7008056640625 2 522.778959 1043.54336 -0.22194 -0.00011603 0.3925 0.00020519 0.17056 8.9167E-05 522.7790074452786 92.365 0.52835 88.44 88.197 88.725 -3.9251 28 14 3 0 0 0 0.48672 1 18068 18068 25.399 0.72543 1 1538400 28674 10423 19148 19156 28232 28232 0.023334990828288937 LSEATQAPG 9 Unmodified _LSEATQAPG_ 0 0 0 nc|ENSG00000166436|O15016-2|TRIM66;nc|ENSG00000166436|O15016|TRIM66;ENSG00000166436|ENST00000646038|TRIM66;TRIM66|p.P964Qfs*4|1|0.37|ENSG00000166436|chr11:8621158-8621158|G/-|frameshift_variant nc|ENSG00000166436|O15016-2|TRIM66 nc|ENSG00000166436|O15016-2|TRIM66 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2357177734375 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 63.124 1 60.127 59.627 60.627 -2.9975 0 0 0 0.20155 1 12189 12189 23.148 5.0134 1 28675 5722 19149 19157 28233 28233 -0.01735371270228825 LSEDAIITG 9 Unmodified _LSEDAIITG_ 0 0 0 nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B nc|ENSG00000156970|O60566-3|BUB1B nc|ENSG00000156970|O60566-3|BUB1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24371337890625 2 459.742565 917.470577 0.12095 5.5607E-05 0.53544 0.00024617 0.6564 0.00030177 459.7427337762283 122.51 0.73978 117.96 117.71 118.45 -4.5476 34 20 2 0 0 0 0.12935 1 24120 24120 11.749 0 1 2193500 28676 5113 19150 19158 28234 28234 0.008540685610455512 LSEDAIITG 9 Unmodified _LSEDAIITG_ 0 0 0 nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B nc|ENSG00000156970|O60566-3|BUB1B nc|ENSG00000156970|O60566-3|BUB1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2440185546875 2 459.742565 917.470577 0.29623 0.00013619 0.21131 9.7149E-05 0.50754 0.00023334 459.7426903849038 122.64 0.95569 118.11 117.72 118.68 -4.5305 33 26 2 0 0 0 0.12935 1 23627 23627 11.749 0 1 1383800 28677 5113 19150 19158 28235 28235 0.008540685610455512 LSEDDPRRV 9 Unmodified _LSEDDPRRV_ 0 0 0 PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant;nc|ENSG00000133401|O15018-2|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF;PDZD2|p.Q1108Sfs*17|1|0.35|ENSG00000133401|chr5:32074423-32074423|C/-|frameshift_variant PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7847290039062 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 160.33 1 155.1 154.6 155.6 -5.2299 0 0 0 0.23508 1 31127 31127 7.2892 0 1 28678 3801 19151 19159 28236 28236 0.0071846546118194965 LSEECCILQG 10 Unmodified _LSEECCILQG_ 0 0 0 REV__sp|P09699|US26_HCMVAUncharacterizedproteinHHLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US26PE=3SV=1 REV__sp|P09699|US26_HCMVAUncharacterizedproteinHHLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US26PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.789794921875 2 547.746467 1093.47838 0.31428 0.00017215 -0.3141 -0.00017205 0.00017887 9.7974E-08 547.7462650017519 113.26 0.72483 113.26 112.9 113.62 0 39 20 3 0 0 0 0.32088 1 22247 22247 36.127 7.6402 1 4770300 + 28679 24670 19152 19160 28237 28237 -0.0646186350534208 LSEEFAQVY 9 Unmodified _LSEEFAQVY_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant;ENST00000572426.5_1_17:3937307-3974023:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7930908203125 2 543.261122 1084.50769 0.22215 0.00012069 0.26779 0.00014548 0.48994 0.00026616 543.2610237043208 82.414 0.66312 78.806 78.531 79.194 -3.6079 32 18 2 0 0 0 0.54076 1 16153 16153 26.884 9.9414 1 2114400 28680 1503 19153 19161 28238 28238 -0.03118259893199138 LSEEFAQVY 9 Unmodified _LSEEFAQVY_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant;ENST00000572426.5_1_17:3937307-3974023:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.261122 1084.50769 0.1029 5.5902E-05 0.57543 0.00031261 0.67833 0.00036851 543.2613386872033 82.751 0.55184 78.877 78.568 79.119 -3.8736 0.025 0.0002754 NaN 20.454 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1600300 28681 1503 19153 19161 -0.03118259893199138 LSEEHKEH 8 Unmodified _LSEEHKEH_ 0 0 0 ENST00000490008.1_1_3:149469904-149470237:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2 ENST00000490008.1_1_3:149469904-149470237:-|nuORF ENST00000490008.1_1_3:149469904-149470237:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0618591308594 3 336.829684 1007.46722 -0.35975 -0.00012117 0.59076 0.00019899 0.23102 7.7814E-05 336.8298298068808 35.237 0.69298 32.96 32.659 33.352 -2.2766 41 19 3 0 0 0 1.0243 1 6244 6244 3.9444 0.3479 1 6040400 28682 2808 19154 19162 28239 28239 -0.03621181492951564 LSEEHKEH 8 Unmodified _LSEEHKEH_ 0 0 0 ENST00000490008.1_1_3:149469904-149470237:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2 ENST00000490008.1_1_3:149469904-149470237:-|nuORF ENST00000490008.1_1_3:149469904-149470237:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 336.829684 1007.46722 -0.39013 -0.00013141 0.54001 0.00018189 0.14989 5.0487E-05 336.8298144085058 32.999 0.56039 32.999 32.71 33.271 0 0.017714 2.8472E-05 NaN 3.9444 43 15 4 NaN NaN NaN NaN 0 NaN NaN 0 7086800 28683 2808 19154 19162 -0.03621181492951564 LSEEHKEH 8 Unmodified _LSEEHKEH_ 0 0 0 ENST00000490008.1_1_3:149469904-149470237:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2 ENST00000490008.1_1_3:149469904-149470237:-|nuORF ENST00000490008.1_1_3:149469904-149470237:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 336.829684 1007.46722 -0.56027 -0.00018872 0.85114 0.00028669 0.29087 9.7974E-05 336.82994308890414 35.313 0.56419 32.919 32.563 33.127 -2.3938 -0.062031 0.00034286 NaN 3.9444 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4958000 28684 2808 19154 19162 -0.03621181492951564 LSEEHKEH 8 Unmodified _LSEEHKEH_ 0 0 0 ENST00000490008.1_1_3:149469904-149470237:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2 ENST00000490008.1_1_3:149469904-149470237:-|nuORF ENST00000490008.1_1_3:149469904-149470237:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 336.829684 1007.46722 0.1657 5.5813E-05 -0.046832 -1.5775E-05 0.11887 4.0038E-05 336.8296699015013 35.299 0.59231 33.046 32.708 33.301 -2.2527 0.065056 -0.00056453 NaN 3.9444 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5344500 28685 2808 19154 19162 -0.03621181492951564 LSEEKLRDEFK 11 Unmodified _LSEEKLRDEFK_ 0 0 0 REV__nc|nan|Q8IYJ2|C10orf67 REV__nc|nan|Q8IYJ2|C10orf67 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2491149902344 3 465.248908 1392.72489 NaN NaN NaN NaN NaN NaN NaN 111.68 1 107.26 106.76 107.76 -4.4231 0 0 0 0.22632 1 22008 22008 0.50596 0.39491 1 + 28686 18641 19155 19163 28240 28240 0.0442409058953217 LSEEKLRDEFK 11 Unmodified _LSEEKLRDEFK_ 0 0 0 REV__nc|nan|Q8IYJ2|C10orf67 REV__nc|nan|Q8IYJ2|C10orf67 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2486267089844 3 465.248908 1392.72489 NaN NaN NaN NaN NaN NaN NaN 111.9 1 107.41 106.91 107.91 -4.4915 0 0 0 0.22632 1 21481 21481 0.50596 0.39491 1 + 28687 18641 19155 19163 28241 28241 0.0442409058953217 LSEELEVP 8 Unmodified _LSEELEVP_ 0 0 0 REV__ENSG00000183856|ENST00000361170|IQGAP3 REV__ENSG00000183856|ENST00000361170|IQGAP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2390441894531 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 90.895 1 86.801 86.301 87.301 -4.0946 0 0 0 0.17894 1 17318 17318 32.117 1.8922 1 + 28688 18871 19156 19164 28242 28242 -0.0009733381323258072 LSEELPWG 8 Unmodified _LSEELPWG_ 0 0 0 ENSG00000167476|ENST00000300961|JSRP1 ENSG00000167476|ENST00000300961|JSRP1 ENSG00000167476|ENST00000300961|JSRP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2473449707031 2 465.732 929.449448 -0.10991 -5.1186E-05 0.24329 0.00011331 0.13339 6.2122E-05 465.73199971262454 111.61 0.76495 107.11 106.89 107.66 -4.4915 43 21 3 0 0 0 8448 1 21404 21404 3.2813 0 1 3123300 28689 5810 19157 19165 28243 28243 -0.018098967478067607 LSEEPNLSFG 10 Unmodified _LSEEPNLSFG_ 0 0 0 REV__ENST00000392845.7_1_3:155560378-155571161:-|nuORF REV__ENST00000392845.7_1_3:155560378-155571161:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7671508789062 2 546.764029 1091.5135 0.014197 7.7625E-06 -1.2006 -0.00065647 -1.1865 -0.00064871 546.7640218162805 51.071 0.66582 48.019 47.677 48.343 -3.0517 53 18 4 0 0 0 0.44731 2 9379 9379;9389 27.629 3.6082 1 4788900 + 28690 21227 19158 19166 28244;28245 28244 -0.028591613815478922 LSEFQLEGY 9 Unmodified _LSEFQLEGY_ 0 0 0 ENSG00000177303|ENST00000321617|CASKIN2;nc|ENSG00000177303|Q8WXE0-2|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7788696289062 2 543.261122 1084.50769 0.33528 0.00018215 0.12611 6.8509E-05 0.46139 0.00025065 543.2610755066602 132.97 0.87552 132.97 132.51 133.38 0 37 24 2 0 0 0 0.029716 2 26344 26319;26344 81.89 49.823 1 6101200 28691 6506 19159 19167 28246;28247 28247 -0.031182598931764005 LSEFQLEGY 9 Unmodified _LSEFQLEGY_ 0 0 0 ENSG00000177303|ENST00000321617|CASKIN2;nc|ENSG00000177303|Q8WXE0-2|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7960815429688 2 543.261122 1084.50769 0.2492 0.00013538 0.50191 0.00027267 0.75112 0.00040805 543.2611025953694 138.11 0.65541 133.47 133.12 133.77 -4.6413 47 18 4 0 0 0 2.4497E-07 2 27234 27234;27293 144.35 66.201 1 11526000 28692 6506 19159 19167 28248;28249 28248 -0.031182598931764005 LSEFQLEGY 9 Unmodified _LSEFQLEGY_ 0 0 0 ENSG00000177303|ENST00000321617|CASKIN2;nc|ENSG00000177303|Q8WXE0-2|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7919921875 2 543.261122 1084.50769 0.087402 4.7482E-05 0.36295 0.00019717 0.45035 0.00024466 543.2612522406525 138.38 0.76814 133.46 133.11 133.88 -4.9216 56 21 3 0 0 0 0.011913 2 26633 26562;26633 100.37 45.598 1 8799100 28693 6506 19159 19167 28250;28251 28251 -0.031182598931764005 LSEFQLEGY 9 Unmodified _LSEFQLEGY_ 0 0 0 ENSG00000177303|ENST00000321617|CASKIN2;nc|ENSG00000177303|Q8WXE0-2|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 ENSG00000177303|ENST00000321617|CASKIN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7830200195312 2 543.261122 1084.50769 0.3317 0.0001802 0.075742 4.1148E-05 0.40744 0.00022135 543.2611174678439 138.23 0.71053 133.39 133.09 133.8 -4.84 50 19 4 0 0 0 0.0038583 3 26613 26609;26613;26685 115.69 47.611 1 8755800 28694 6506 19159 19167 28252;28253;28254 28253 -0.031182598931764005 LSEGATGPAL 10 Unmodified _LSEGATGPAL_ 0 0 0 REV__ENSG00000196589|ENST00000636986|MBD3L2B REV__ENSG00000196589|ENST00000636986|MBD3L2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2408447265625 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 141.8 1 136.81 136.31 137.31 -4.9877 0 0 0 0.22576 1 27313 27313 14.838 0.93222 1 + 28695 18773 19160 19168 28255 28255 0.010254882809135779 LSEIGGPQGW 10 Unmodified _LSEIGGPQGW_ 0 0 0 ENST00000264716.8_1_2:28616145-28616232:+|nuORF ENST00000264716.8_1_2:28616145-28616232:+|nuORF ENST00000264716.8_1_2:28616145-28616232:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2612915039062 2 522.261456 1042.50836 -0.2302 -0.00012022 0.054035 2.822E-05 -0.17616 -9.2002E-05 522.2615124794752 83.045 0.80602 79.438 79.027 79.833 -3.6079 43 22 2 0 0 0 0.67319 1 16148 16148 13.906 0 1 3433700 28696 8343 19161 19169 28256 28256 -0.011194204534604069 LSEKDGELR 9 Unmodified _LSEKDGELR_ 0 0 0 REV__ENSG00000166387|ENST00000299492|PPFIBP2 REV__ENSG00000166387|ENST00000299492|PPFIBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.67919921875 2 523.77747 1045.54039 0.30257 0.00015848 0.1202 6.2956E-05 0.42277 0.00022144 523.7774340791825 84.002 0.45559 84.002 83.788 84.243 0 25 12 3 0 0 0 0.74858 1 16394 16394 17.113 0 1 3329000 + 28697 17842 19162 19170 28257 28257 0.019439472296653548 LSEKFITEK 9 Unmodified _LSEKFITEK_ 0 0 0 REV__ENSG00000147082|ENST00000376042|CCNB3 REV__ENSG00000147082|ENST00000376042|CCNB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.791259765625 2 547.808239 1093.60193 NaN NaN NaN NaN NaN NaN NaN 166.96 1 162.01 161.51 162.51 -4.948 0 0 0 0.21844 1 32788 32788 18.146 1.2041 1 + 28698 16918 19163 19171 28258 28258 0.05886878928936312 LSEKHLEKYY 10 Unmodified _LSEKHLEKYY_ 0 0 0 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22882080078125 3 437.231077 1308.6714 -0.10438 -4.5639E-05 -0.73206 -0.00032008 -0.83644 -0.00036572 437.23035827619213 64.619 0.52429 61.621 61.29 61.814 -2.9975 23 14 2 0 0 0 0.52989 1 12477 12477 1.9064 1.8626 1 673180 28699 26397 19164 19172 28259 28259 0.029413378777235266 LSEKHLEKYY 10 Unmodified _LSEKHLEKYY_ 0 0 0 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2154235839844 3 437.231077 1308.6714 0.18235 7.9731E-05 -0.87862 -0.00038416 -0.69627 -0.00030443 437.2306496022608 65.113 0.34956 61.655 61.437 61.787 -3.4581 15 9 2 0 0 0 0.49482 2 12184 12153;12184 24.957 4.3761 1 844870 28700 26397 19164 19172 28260;28261 28261 0.029413378777235266 LSEKKIITY 9 Unmodified _LSEKKIITY_ 0 0 0 OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant;ENSG00000172188|ENST00000641580|OR4C11 OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7858276367188 2 547.826432 1093.63831 NaN NaN NaN NaN NaN NaN NaN 133.97 1 133.97 133.47 134.47 0 0 0 0 0.23508 1 26513 26513 6.7232 0.99131 1 28701 12728 19165 19173 28262 28262 0.0952375582564855 LSEKPPYSKY 10 Unmodified _LSEKPPYSKY_ 0 0 0 nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant nc|ENSG00000144824|Q86SQ0-2|PHLDB2 nc|ENSG00000144824|Q86SQ0-2|PHLDB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.22747802734375 3 404.548406 1210.62339 0.24456 9.8935E-05 -0.32718 -0.00013236 -0.082619 -3.3423E-05 404.54823892570596 43.601 2.3088 43.601 42.048 44.357 0 235 66 5 0 0 0 0.029144 1 8242 8242 98.501 84.095 1 46844000 28702 4581 19166 19174 28263 28263 0.026502639576619913 LSEKPPYSKY 10 Unmodified _LSEKPPYSKY_ 0 0 0 nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant nc|ENSG00000144824|Q86SQ0-2|PHLDB2 nc|ENSG00000144824|Q86SQ0-2|PHLDB2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 404.548406 1210.62339 -0.22097 -8.9395E-05 0.070595 2.8559E-05 -0.15038 -6.0836E-05 404.54839146663176 46.691 2.3356 43.85 42.259 44.595 -2.8409 0.10407 0.00028698 NaN 98.501 229 66 5 NaN NaN NaN NaN 0 NaN NaN 0 54270000 28703 4581 19166 19174 0.026502639576619913 LSEKPPYSKY 10 Unmodified _LSEKPPYSKY_ 0 0 0 nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant nc|ENSG00000144824|Q86SQ0-2|PHLDB2 nc|ENSG00000144824|Q86SQ0-2|PHLDB2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 404.548406 1210.62339 -0.023386 -9.4608E-06 -0.088991 -3.6001E-05 -0.11238 -4.5462E-05 404.5483192447028 46.729 2.3499 43.787 42.195 44.545 -2.9421 0.040983 9.3295E-05 NaN 98.501 242 67 5 NaN NaN NaN NaN 0 NaN NaN 0 40987000 28704 4581 19166 19174 0.026502639576619913 LSEKQRARY 9 Unmodified _LSEKQRARY_ 0 0 0 ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2 ENSG00000109685|ENST00000508803|NSD2 ENSG00000109685|ENST00000508803|NSD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3214111328125 2 575.820004 1149.62546 0.17317 9.9715E-05 0.37606 0.00021654 0.54923 0.00031626 575.8202508101961 13.982 0.1745 13.982 13.898 14.073 0 12 4 4 0 0 0 0.069179 2 2055 2055;2057 36.127 23.886 1 2376900 28705 2538 19167 19175 28264;28265 28264 0.05662737486136393 LSELELQEWY 10 Unmodified _LSELELQEWY_ 0 0 0 HPCA|p.F22L|1|0.37|ENSG00000121905|chr1:32888964-32888964|C/A|missense_variant HPCA|p.F22L|1|0.37|ENSG00000121905|chr1:32888964-32888964|C/A|missense_variant HPCA|p.F22L|1|0.37|ENSG00000121905|chr1:32888964-32888964|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.216796875 3 437.215204 1308.62378 NaN NaN NaN NaN NaN NaN NaN 100.6 1 96.3 95.8 96.8 -4.297 0 0 0 0.22588 1 19243 19243 7.4771 0.43998 1 28706 11914 19168 19176 28266 28266 -0.01818361113123501 LSELELQEWY 10 Unmodified _LSELELQEWY_ 0 0 0 HPCA|p.F22L|1|0.37|ENSG00000121905|chr1:32888964-32888964|C/A|missense_variant HPCA|p.F22L|1|0.37|ENSG00000121905|chr1:32888964-32888964|C/A|missense_variant HPCA|p.F22L|1|0.37|ENSG00000121905|chr1:32888964-32888964|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2164611816406 3 437.215204 1308.62378 NaN NaN NaN NaN NaN NaN NaN 100.84 1 96.547 96.047 97.047 -4.297 0 0 0 0.22588 1 19294 19294 7.4771 0.43998 1 28707 11914 19168 19176 28267 28267 -0.01818361113123501 LSELGQYT 8 Unmodified _LSELGQYT_ 0 0 0 REV__nc|ENSG00000110172|Q9UHD1-2|CHORDC1 REV__nc|ENSG00000110172|Q9UHD1-2|CHORDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.4026489257812 1 910.451639 909.444362 0.30178 0.00027475 0.028706 2.6135E-05 0.33048 0.00030089 910.4512573844459 128.55 0.56332 123.81 123.45 124.01 -4.7408 20 15 2 0 0 0 0.45067 1 24771 24771 30.225 1.738 1 2729800 + 28708 15194 19169 19177 28268 28268 -0.013982006104129141 LSELKELSY 9 Unmodified _LSELKELSY_ 0 0 0 NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant;nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1 NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.281982421875 2 541.292422 1080.57029 0.25 0.00013532 1.1064 0.00059889 1.3564 0.00073421 541.2931360069551 104.15 0.45656 99.806 99.551 100.01 -4.346 15 12 2 0 0 0 0.40602 1 19912 19912 25.399 1.3787 1 674280 28709 5650 19170 19178 28269 28269 0.03322886175010353 LSEMYWHE 8 Unmodified _LSEMYWHE_ 0 0 0 REV__ENSG00000179104|ENST00000321196|TMTC2 REV__ENSG00000179104|ENST00000321196|TMTC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7899780273438 2 547.734217 1093.45388 NaN NaN NaN NaN NaN NaN NaN 161.98 1 156.83 156.33 157.33 -5.1438 0 0 0 0.21486 1 31459 31459 5.2307 0.90143 1 + 28710 18639 19171 19179 28270 28270 -0.0891075559654837 LSEPFISWY 9 Unmodified _LSEPFISWY_ 0 0 0 REV__SLC22A23|p.E648Sfs*36|1|0.22|ENSG00000137266|chr6:3273174-3273174|C/-|frameshift_variant REV__SLC22A23|p.E648Sfs*36|1|0.22|ENSG00000137266|chr6:3273174-3273174|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.209716796875 3 381.19033 1140.54916 NaN NaN NaN NaN NaN NaN NaN 94.701 1 94.701 94.201 95.201 0 0 0 0 0.23508 1 18547 18547 8.1555 0 1 + 28711 16384 19172 19180 28271 28271 -0.015490791338379495 LSEPRKVRR 9 Unmodified _LSEPRKVRR_ 0 0 0 ENST00000586166.5_2_16:4755229-4784259:-|nuORF ENST00000586166.5_2_16:4755229-4784259:-|nuORF ENST00000586166.5_2_16:4755229-4784259:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 570.7257080078125 2 570.851638 1139.68872 NaN NaN NaN NaN NaN NaN NaN 165.22 1 165.22 164.72 165.72 0 0 0 0 0.22621 1 33506 33506 15.847 5.7733 1 28712 11545 19173 19181 28272 28272 0.12446722994036463 LSEPRLAPP 9 Unmodified _LSEPRLAPP_ 0 0 0 REV__ENST00000322177.5_1_15:75247374-75247581:-|nuORF REV__ENST00000322177.5_1_15:75247374-75247581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2740783691406 2 490.282192 978.549831 NaN NaN NaN NaN NaN NaN NaN 124.54 1 124.54 124.04 125.04 0 0 0 0 0.22962 1 24561 24561 14.838 0.93222 1 + 28713 20558 19174 19182 28273 28273 0.05969760305845284 LSERLQSLT 9 Unmodified _LSERLQSLT_ 0 0 0 REV__ENST00000549648.5_1_16:699416-706047:+|nuORF REV__ENST00000549648.5_1_16:699416-706047:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6996459960938 2 523.795663 1045.57677 0.014177 7.4257E-06 -3.7117 -0.0019442 -3.6975 -0.0019367 523.7926739455789 162.04 0.17419 157.25 157.13 157.31 -4.7898 7 4 2 0 0 0 0.82765 1 32219 32219 5.7319 5.2735 1 1132100 + 28714 21500 19175 19183 28274 28274 0.055808241263775926 LSERMCKY 8 Oxidation (M) _LSERM(Oxidation (M))CKY_ LSERM(1)CKY LSERM(57)CKY 0 0 1 REV__ZNF136|p.W537R|1|0.24|ENSG00000196646|chr19:12187987-12187987|T/C|missense_variant REV__ZNF136|p.W537R|1|0.24|ENSG00000196646|chr19:12187987-12187987|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6944580078125 2 523.243895 1044.47324 -0.22154 -0.00011592 1.1102 0.0005809 0.88865 0.00046498 523.2444228388204 89.872 0.74711 85.828 85.417 86.164 -4.0443 56 20 3 0 0 0 0.34864 1 17120 17120 57.471 14.503 1 15747000 + 28715 25568 19176 19184 28275 28275 128 -0.0472212257730007 LSERMCKY 8 Oxidation (M) _LSERM(Oxidation (M))CKY_ LSERM(1)CKY LSERM(57)CKY 0 0 1 REV__ZNF136|p.W537R|1|0.24|ENSG00000196646|chr19:12187987-12187987|T/C|missense_variant REV__ZNF136|p.W537R|1|0.24|ENSG00000196646|chr19:12187987-12187987|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6924438476562 2 523.243895 1044.47324 0.24319 0.00012725 0.75282 0.00039391 0.99601 0.00052116 523.2442112628343 89.523 0.83717 85.746 85.279 86.116 -3.7779 66 23 4 0 0 0 0.12867 1 17106 17106 57.471 9.1255 1 8256400 + 28716 25568 19176 19184 28276 28276 128 -0.0472212257730007 LSERMCKY 8 Oxidation (M) _LSERM(Oxidation (M))CKY_ LSERM(1)CKY LSERM(57)CKY 0 0 1 REV__ZNF136|p.W537R|1|0.24|ENSG00000196646|chr19:12187987-12187987|T/C|missense_variant REV__ZNF136|p.W537R|1|0.24|ENSG00000196646|chr19:12187987-12187987|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6970825195312 2 523.243895 1044.47324 0.24319 0.00012725 0.75282 0.00039391 0.99601 0.00052116 523.2442112628343 89.523 0.83717 85.746 85.279 86.116 -3.7779 66 23 4 0 0 0 0.34864 1 17149 17149 57.471 14.503 1 8256400 + 28717 25568 19176 19184 28277 28277 128 -0.0472212257730007 LSERMCKY 8 Oxidation (M) _LSERM(Oxidation (M))CKY_ 0 0 1 REV__ZNF136|p.W537R|1|0.24|ENSG00000196646|chr19:12187987-12187987|T/C|missense_variant REV__ZNF136|p.W537R|1|0.24|ENSG00000196646|chr19:12187987-12187987|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.243895 1044.47324 0.20342 0.00010644 0.88169 0.00046134 1.0851 0.00056778 523.2442813845191 85.437 0.88811 85.437 85.083 85.971 0 -0.25183 -0.00013173 NaN 57.471 60 24 3 NaN NaN NaN NaN 0 NaN NaN 0 9919300 + 28718 25568 19176 19184 128 -0.0472212257730007 LSERTFPHLC 10 Unmodified _LSERTFPHLC_ 0 0 0 REV__SCN4A|p.R18H|1|0.13|ENSG00000007314|chr17:63972789-63972789|C/T|missense_variant REV__SCN4A|p.R18H|1|0.13|ENSG00000007314|chr17:63972789-63972789|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.278564453125 2 601.802965 1201.59138 NaN NaN NaN NaN NaN NaN NaN 121.04 1 116.35 115.85 116.85 -4.6873 0 0 0 0.22588 1 23234 23234 10.824 0.75 1 + 28719 24596 19177 19185 28278 28278 -0.0013542699714435003 LSEVNEWIP 9 Unmodified _LSEVNEWIP_ 0 0 0 ENST00000544487.5_1_16:30770684-30771803:-|nuORF ENST00000544487.5_1_16:30770684-30771803:-|nuORF ENST00000544487.5_1_16:30770684-30771803:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7955322265625 2 543.776939 1085.53933 0.32211 0.00017516 -3.7113 -0.0020181 -3.3892 -0.001843 544.2748481676981 102.47 1.2366 98.149 97.573 98.809 -4.3208 68 35 3 0 0 0 0.2219 3 19563 19558;19563;19608 36.127 7.6402 1 4719700 28720 11109 19178 19186 28279;28280;28281 28280 -2.2671392343909247E-05 LSEVNEWIP 9 Unmodified _LSEVNEWIP_ 0 0 0 ENST00000544487.5_1_16:30770684-30771803:-|nuORF ENST00000544487.5_1_16:30770684-30771803:-|nuORF ENST00000544487.5_1_16:30770684-30771803:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7792358398438 2 543.776939 1085.53933 0.5808 0.00031582 -3.31 -0.0017999 -2.7292 -0.0014841 544.2751144150842 102.11 1.2848 98.088 97.598 98.882 -4.0212 73 36 3 0 0 0 0.28819 1 19589 19589 32.305 3.8186 1 4736900 28721 11109 19178 19186 28282 28282 -2.2671392343909247E-05 LSEVPMRE 8 Unmodified _LSEVPMRE_ 0 0 0 REV__CCDC169|p.A130Dfs*22|1|0.27|ENSG00000242715|chr13:36254070-36254070|G/-|frameshift_variant REV__CCDC169|p.A130Dfs*22|1|0.27|ENSG00000242715|chr13:36254070-36254070|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24267578125 2 480.744585 959.474617 0.065806 3.1636E-05 0.31473 0.0001513 0.38054 0.00018294 480.7449117828084 115.62 0.44711 111.15 111.01 111.46 -4.4726 15 12 2 0 0 0 0.60622 1 22801 22801 21.747 0.87544 1 684670 + 28722 13290 19179 19187 28283 28283 -0.00674165216878464 LSEVWWRSCVL 11 Unmodified _LSEVWWRSCVL_ 0 0 0 REV__ENST00000533206.1_1_11:117023163-117034692:+|nuORF REV__ENST00000533206.1_1_11:117023163-117034692:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2491455078125 3 459.904307 1376.69109 NaN NaN NaN NaN NaN NaN NaN 129.89 1 129.89 129.39 130.39 0 0 0 0 0.2341 1 25664 25664 5.0475 0.3316 1 + 28723 22793 19180 19188 28284 28284 0.0178139061681577 LSEYAPPP 8 Unmodified _LSEYAPPP_ 0 0 0 nc|ENSG00000171016|Q9Y3Y4|PYGO1;ENSG00000171016|ENST00000563719|PYGO1 nc|ENSG00000171016|Q9Y3Y4|PYGO1 nc|ENSG00000171016|Q9Y3Y4|PYGO1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2197570800781 2 437.221268 872.427984 NaN NaN NaN NaN NaN NaN NaN 37.544 1 35.207 34.707 35.707 -2.3375 0 0 0 0.22834 1 6651 6651 0.62683 0 1 28724 6119 19181 19189 28285 28285 -0.013332817765217442 LSEYQRNFLWK 11 Unmodified _LSEYQRNFLWK_ 0 0 0 MDM1|p.R56Kfs*7|1|0.1|ENSG00000111554|chr12:68326988-68326989|-/T|frameshift_variant;ENST00000541087.1_1_12:68724821-68726025:-|nuORF;nc|ENSG00000111554|Q8TC05-3|MDM1;nc|ENSG00000111554|Q8TC05-2|MDM1;ENST00000545724.2_1_12:68718988-68726025:-|nuORF;MDM1|p.W325Gfs*4|1|0.24|ENSG00000111554|chr12:68321379-68321379|A/-|frameshift_variant;MDM1|p.I618Ffs*46|1|0.39|ENSG00000111554|chr12:68302740-68302740|T/-|frameshift_variant;nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1 MDM1|p.R56Kfs*7|1|0.1|ENSG00000111554|chr12:68326988-68326989|-/T|frameshift_variant MDM1|p.R56Kfs*7|1|0.1|ENSG00000111554|chr12:68326988-68326989|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3992919921875 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 161.66 1 161.66 161.16 162.16 0 0 0 0 0.23429 1 32471 32471 4.897 0.36815 1 28725 2627 19182 19190 28286 28286 0.039878069259884796 LSEYQRNFLWK 11 Unmodified _LSEYQRNFLWK_ 0 0 0 MDM1|p.R56Kfs*7|1|0.1|ENSG00000111554|chr12:68326988-68326989|-/T|frameshift_variant;ENST00000541087.1_1_12:68724821-68726025:-|nuORF;nc|ENSG00000111554|Q8TC05-3|MDM1;nc|ENSG00000111554|Q8TC05-2|MDM1;ENST00000545724.2_1_12:68718988-68726025:-|nuORF;MDM1|p.W325Gfs*4|1|0.24|ENSG00000111554|chr12:68321379-68321379|A/-|frameshift_variant;MDM1|p.I618Ffs*46|1|0.39|ENSG00000111554|chr12:68302740-68302740|T/-|frameshift_variant;nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1 MDM1|p.R56Kfs*7|1|0.1|ENSG00000111554|chr12:68326988-68326989|-/T|frameshift_variant MDM1|p.R56Kfs*7|1|0.1|ENSG00000111554|chr12:68326988-68326989|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3737182617188 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 122.1 1 117.55 117.05 118.05 -4.5476 0 0 0 0.23698 1 24068 24068 1.1933 0.12188 1 28726 2627 19182 19190 28287 28287 0.039878069259884796 LSEYYEEPDD 10 Unmodified _LSEYYEEPDD_ 0 0 0 REV__ENSG00000152409|ENST00000396137|JMY REV__ENSG00000152409|ENST00000396137|JMY MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7635498046875 2 630.251148 1258.48774 0.4124 0.00025991 -4.1836 -0.0026367 -3.7712 -0.0023768 630.7482878841562 166.12 0.13484 166.12 166.07 166.2 0 6 3 2 0 0 0 0.89521 1 33821 33821 6.7232 0.99131 1 27732000 + 28727 17109 19183 19191 28288 28288 -0.13116100414458742 LSFATFGY 8 Unmodified _LSFATFGY_ 0 0 0 REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7520751953125 2 453.223811 904.433069 -0.14608 -6.6207E-05 -0.45349 -0.00020553 -0.59957 -0.00027174 453.223504410465 76.133 0.70731 72.718 72.368 73.075 -3.4151 38 19 3 0 0 0 1.0095 1 14903 14903 2.5775 0 1 2155400 + 28728 14259 19184 19192 28289 28289 -0.02296977913908904 LSFCEENDDPQ 11 Unmodified _LSFCEENDDPQ_ 0 0 0 BRD8|p.G620Wfs*10|1|0.17|ENSG00000112983|chr5:138164101-138164102|-/A|frameshift_variant;nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant;ENSG00000112983|ENST00000254900|BRD8 BRD8|p.G620Wfs*10|1|0.17|ENSG00000112983|chr5:138164101-138164102|-/A|frameshift_variant BRD8|p.G620Wfs*10|1|0.17|ENSG00000112983|chr5:138164101-138164102|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 649.044189453125 2 648.756075 1295.4976 1.1136 0.00072245 0.23474 0.00015229 1.3483 0.00087474 649.2593764290268 165.6 0.16887 160.81 160.75 160.91 -4.7898 6 4 2 0 0 0 0.95894 1 33203 33203 1.0715 0 1 7091600 28729 330 19185 19193 28290 28290 -0.1383323568072683 LSFDQFIPV 9 Unmodified _LSFDQFIPV_ 0 0 0 REV__ENSG00000135776|ENST00000344517|ABCB10 REV__ENSG00000135776|ENST00000344517|ABCB10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2828369140625 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 45.493 1 42.652 42.152 43.152 -2.8409 0 0 0 0.22962 1 8569 8569 14.838 2.3067 1 + 28730 16289 19186 19194 28291 28291 0.024552247287601858 LSFEVFRSP 9 Unmodified _LSFEVFRSP_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2849731445312 2 541.287474 1080.5604 0.40432 0.00021885 -0.35218 -0.00019063 0.052143 2.8224E-05 541.7890069281915 109.33 0.65909 109.33 108.95 109.61 0 28 18 2 0 0 0 0.52396 1 21511 21511 18.146 2.2992 1 1425500 28731 7178;12859 19187 19195 28292 28292 0.023337429602861448 LSFGPRYGF 9 Unmodified _LSFGPRYGF_ 0 0 0 nc|ENSG00000116703|P20941-2|PDC;PDC|p.F213Lfs*9|1|0.26|ENSG00000116703|chr1:186444081-186444081|A/-|frameshift_variant;ENSG00000116703|ENST00000391997|PDC;nc|ENSG00000116703|P20941-3|PDC nc|ENSG00000116703|P20941-2|PDC nc|ENSG00000116703|P20941-2|PDC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2681274414062 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 57.184 1 54.29 53.79 54.79 -2.8944 0 0 0 0.18966 1 10974 10974 0.12781 0 1 28732 2945 19188 19196 28293 28293 0.004054911343700951 LSFHNFTSL 9 Unmodified _LSFHNFTSL_ 0 0 0 REV__ENST00000402907.1_1_6:143664004-143664346:+|nuORF REV__ENST00000402907.1_1_6:143664004-143664346:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2711791992188 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 149.01 1 143.86 143.36 144.36 -5.1557 0 0 0 0.20155 1 28860 28860 23.148 2.2772 1 + 28733 21366 19189 19197 28294 28294 -0.0005883007379452465 LSFICRFELFW 11 Unmodified _LSFICRFELFW_ 0 0 0 REV__ZNF195|p.F271Ifs*19|1|0.28|ENSG00000005801|chr11:3360197-3360198|-/T|frameshift_variant REV__ZNF195|p.F271Ifs*19|1|0.28|ENSG00000005801|chr11:3360197-3360198|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 730.9306030273438 2 730.873391 1459.73223 NaN NaN NaN NaN NaN NaN NaN 175.05 1 170.17 169.67 170.67 -4.8845 0 0 0 0.23634 1 34797 34797 3.2813 0.28607 1 + 28734 13862 19190 19198 28295 28295 0.020751516562768302 LSFLELVV 8 Unmodified _LSFLELVV_ 0 0 0 nc|ENSG00000127412|Q9NQA5-2|TRPV5;TRPV5|p.P424Hfs*15|1|0.17|ENSG00000127412|chr7:142915324-142915324|C/-|frameshift_variant;ENSG00000127412|ENST00000265310|TRPV5 nc|ENSG00000127412|Q9NQA5-2|TRPV5 nc|ENSG00000127412|Q9NQA5-2|TRPV5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2427673339844 2 460.278586 918.54262 NaN NaN NaN NaN NaN NaN NaN 111.53 1 107.3 106.8 107.8 -4.2289 0 0 0 0.21486 1 21467 21467 9.3474 0 1 28735 3473 19191 19199 28296 28296 0.08009027705429617 LSFLFPLFNF 10 Unmodified _LSFLFPLFNF_ 0 0 0 ENST00000547866.1_1_12:49392421-49411334:+|nuORF ENST00000547866.1_1_12:49392421-49411334:+|nuORF ENST00000547866.1_1_12:49392421-49411334:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.764892578125 2 622.839342 1243.66413 NaN NaN NaN NaN NaN NaN NaN 164.28 1 159.23 158.73 159.73 -5.0446 0 0 0 0.22588 1 32028 32028 6.2058 1.6769 1 28736 11148 19192 19200 28297 28297 0.05204650067912553 LSFMAAWM 8 Unmodified _LSFMAAWM_ 0 0 0 L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|1|1|sense L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|1|1|sense L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|1|1|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72198486328125 2 478.722067 955.429581 NaN NaN NaN NaN NaN NaN NaN 111.7 1 107.2 106.7 107.7 -4.4915 0 0 0 0.21486 1 21439 21439 9.3474 0.75416 1 28737 12017 19193 19201 28298 28298 -0.04991687283779811 LSFMQFSP 8 Unmodified _LSFMQFSP_ 0 0 0 REV__ENST00000261168.8_1_12:14654961-14655054:+|nuORF REV__ENST00000261168.8_1_12:14654961-14655054:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7302551269531 2 478.730946 955.447339 NaN NaN NaN NaN NaN NaN NaN 137.78 1 132.94 132.44 133.44 -4.84 0 0 0 0.22674 1 26546 26546 0.68139 0 1 + 28738 20166 19194 19202 28299 28299 -0.03216648757256735 LSFNFRPV 8 Unmodified _LSFNFRPV_ 0 0 0 REV__ENSG00000185352|ENST00000376705|HS6ST3 REV__ENSG00000185352|ENST00000376705|HS6ST3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2718811035156 2 490.271627 978.528701 NaN NaN NaN NaN NaN NaN NaN 172.32 1 172.32 171.82 172.82 0 0 0 0 0.21486 1 35570 35570 8.5933 0 1 + 28739 18962 19195 19203 28300 28300 0.03857794996986286 LSFPFIHKY 9 Unmodified _LSFPFIHKY_ 0 0 0 REV__ENST00000531251.1_1_1:153750510-153751163:+|nuORF REV__ENST00000531251.1_1_1:153750510-153751163:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3380126953125 2 576.316035 1150.61752 NaN NaN NaN NaN NaN NaN NaN 88.304 1 84.512 84.012 85.012 -3.7926 0 0 0 0.23508 1 17273 17273 11.64 0.81637 1 + 28740 16737 19196 19204 28301 28301 0.04823210236668274 LSFQDRPG 8 Unmodified _LSFQDRPG_ 0 0 0 REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43 REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2368469238281 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 59.696 1 59.696 59.196 60.196 0 0 0 0 0.1328 1 11437 11437 39.957 0 1 + 28741 14368 19197 19205 28302 28302 -0.006559587964261482 LSFQDRPG 8 Unmodified _LSFQDRPG_ 0 0 0 REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43 REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2354736328125 2 460.235242 918.45593 -0.017798 -8.1913E-06 0.65639 0.00030209 0.63859 0.0002939 460.23544089323457 62.429 0.31783 59.468 59.288 59.606 -2.9614 14 8 2 0 0 0 0.25515 1 12031 12031 39.957 0 1 1063200 + 28742 14368 19197 19205 28303 28303 -0.006559587964261482 LSFQDRPG 8 Unmodified _LSFQDRPG_ 0 0 0 REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43 REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2352600097656 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 62.637 1 59.221 58.721 59.721 -3.4158 0 0 0 0.17841 1 11694 11694 32.305 0 1 + 28743 14368 19197 19205 28304 28304 -0.006559587964261482 LSFQDRPG 8 Unmodified _LSFQDRPG_ 0 0 0 REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43 REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2361755371094 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 62.84 1 59.583 59.083 60.083 -3.2567 0 0 0 0.1328 1 11784 11784 39.957 0 1 + 28744 14368 19197 19205 28305 28305 -0.006559587964261482 LSFQNPSSHY 10 Unmodified _LSFQNPSSHY_ 0 0 0 ENST00000380122.9_2_X:16861892-16862162:+|nuORF ENST00000380122.9_2_X:16861892-16862162:+|nuORF ENST00000380122.9_2_X:16861892-16862162:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2756958007812 2 590.275095 1178.53564 NaN NaN NaN NaN NaN NaN NaN 88.198 1 88.198 87.698 88.698 0 0 0 0 0.22588 1 17213 17213 10.824 1.4408 1 28745 9310 19198 19206 28306 28306 -0.046489369130767955 LSFQNPSSHY 10 Unmodified _LSFQNPSSHY_ 0 0 0 ENST00000380122.9_2_X:16861892-16862162:+|nuORF ENST00000380122.9_2_X:16861892-16862162:+|nuORF ENST00000380122.9_2_X:16861892-16862162:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.27490234375 2 590.275095 1178.53564 NaN NaN NaN NaN NaN NaN NaN 131.93 1 131.93 131.43 132.43 0 0 0 0 0.22588 1 26076 26076 6.2058 0 1 28746 9310 19198 19206 28307 28307 -0.046489369130767955 LSFSFMVL 8 Unmodified _LSFSFMVL_ 0 0 0 nc|ENSG00000126838|P20742-2|PZP;ENSG00000126838|ENST00000261336|PZP nc|ENSG00000126838|P20742-2|PZP nc|ENSG00000126838|P20742-2|PZP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1705017089844 3 315.170102 942.488476 NaN NaN NaN NaN NaN NaN NaN 96.984 1 92.886 92.386 93.386 -4.0978 0 0 0 0.21486 1 19025 19025 1.8442 0 1 28747 3450 19199 19207 28308 28308 0.014931122822190446 LSFSGASGL 9 Unmodified _LSFSGASGL_ 0 0 0 REV__ENST00000586817.5_1_19:1089487-1094188:-|nuORF REV__ENST00000586817.5_1_19:1089487-1094188:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4734497070312 1 838.430509 837.423233 0.42552 0.00035677 -0.16423 -0.0001377 0.26129 0.00021907 838.430412460122 139.3 0.62434 134.66 134.27 134.89 -4.6439 29 17 2 0 0 0 0.095246 1 27530 27530 2.8827 2.0075 1 5290500 + 28748 23269 19200 19208 28309 28309 -0.0019816591926655747 LSFSVRLPY 9 Unmodified _LSFSVRLPY_ 0 0 0 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2847290039062 2 541.305667 1080.59678 NaN NaN NaN NaN NaN NaN NaN 155.28 1 155.28 154.78 155.78 0 0 0 0 0.23508 1 31128 31128 10.824 1.4765 1 28749 12553 19201 19209 28310 28310 0.059706198569983826 LSFTDVIEGT 10 Unmodified _LSFTDVIEGT_ 0 0 0 REV__FAM83E|p.A276T|1|0.34|ENSG00000105523|chr19:48603844-48603844|C/T|missense_variant REV__FAM83E|p.A276T|1|0.34|ENSG00000105523|chr19:48603844-48603844|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2732543945312 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 145.94 1 140.94 140.44 141.44 -5 0 0 0 0.22588 1 28234 28234 9.3831 0.63772 1 + 28750 23520 19202 19210 28311 28311 -0.0031399072172462184 LSFTQSSPAK 10 Unmodified _LSFTQSSPAK_ 0 0 0 REV__nc|ENSG00000138347|Q86TC9-2|MYPN REV__nc|ENSG00000138347|Q86TC9-2|MYPN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2783203125 2 533.282389 1064.55022 0.067801 3.6157E-05 0.2287 0.00012196 0.2965 0.00015812 533.2824926249845 86.162 1.3353 86.162 85.539 86.875 0 96 37 4 0 0 0 0.53695 1 16702 16702 22.658 3.4011 1 8528100 + 28751 24060 19203 19211 28312 28312 0.02053135235018999 LSFTTIIEA 9 Unmodified _LSFTTIIEA_ 0 0 0 REV__ENSG00000137860|ENST00000347644|SLC28A2 REV__ENSG00000137860|ENST00000347644|SLC28A2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.0055847167969 3 332.186697 993.538263 NaN NaN NaN NaN NaN NaN NaN 157.75 1 152.48 151.98 152.98 -5.2712 0 0 0 0.23508 1 30601 30601 2.4985 0 1 + 28752 16421 19204 19212 28313 28313 0.04123518491860523 LSFWAICFY 9 Unmodified _LSFWAICFY_ 0 0 0 REV__KCNS1|p.F285L|1|0.71|ENSG00000124134|chr20:45097917-45097917|G/T|missense_variant REV__KCNS1|p.F285L|1|0.71|ENSG00000124134|chr20:45097917-45097917|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.31103515625 2 575.275521 1148.53649 0.023244 1.3372E-05 -0.88222 -0.00050752 -0.85897 -0.00049415 575.2749561106901 140.56 1.3686 135.91 135.41 136.78 -4.6493 83 38 3 0 0 0 0.67531 1 27673 27673 7.9102 2.1783 1 9793300 + 28753 23704 19205 19213 28314 28314 -0.0318381379775019 LSFWDSPSR 9 Unmodified _LSFWDSPSR_ 0 0 0 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.766845703125 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 145.31 1 140.37 139.87 140.87 -4.9445 0 0 0 0.23508 1 28092 28092 6.2058 0.47393 1 28754 8025 19206 19214 28315 28315 -0.023760180791896346 LSFYALSNTA 10 Unmodified _LSFYALSNTA_ 0 0 0 ENSG00000186919|ENST00000334586|ZACN ENSG00000186919|ENST00000334586|ZACN ENSG00000186919|ENST00000334586|ZACN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7758178710938 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 140.98 1 135.99 135.49 136.49 -4.9877 0 0 0 2.8426 1 27141 27141 1.914 0 1 28755 7084 19207 19215 28316 28316 -2.2671392343909247E-05 LSFYSIHPG 9 Unmodified _LSFYSIHPG_ 0 0 0 REV__ENST00000494593.1_1_11:67351834-67352083:+|nuORF REV__ENST00000494593.1_1_11:67351834-67352083:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 510.52978515625 2 510.761092 1019.50763 NaN NaN NaN NaN NaN NaN NaN 148.44 1 148.44 147.94 148.94 0 0 0 0 0.23508 1 29708 29708 7.9102 2.6795 1 + 28756 22367 19208 19216 28317 28317 -0.001342151025255589 LSGDGEMQYS 10 Unmodified _LSGDGEMQYS_ 0 0 0 REV__SENP5|p.E444G|1|0.21|ENSG00000119231|chr3:196886512-196886512|A/G|missense_variant REV__SENP5|p.E444G|1|0.21|ENSG00000119231|chr3:196886512-196886512|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7704467773438 2 543.724046 1085.43354 NaN NaN NaN NaN NaN NaN NaN 156.29 1 151.01 150.51 151.51 -5.2854 0 0 0 0.22588 1 30319 30319 6.2058 0.44535 1 + 28757 24603 19209 19217 28318 28318 -0.10575971047023813 LSGDLKAVEI 10 Unmodified _LSGDLKAVEI_ 0 0 0 REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;REV__LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2654418945312 2 522.800414 1043.58628 0.42894 0.00022425 -0.75985 -0.00039725 -0.33091 -0.000173 522.8004606296493 119.99 0.44483 115.52 115.34 115.78 -4.467 26 12 3 0 0 0 0.52179 1 23145 23145 26.268 1.2772 1 1413500 + 28758 18047;23811 19210 19218 28319 28319 0.06622592411895312 LSGDLKAVEI 10 Unmodified _LSGDLKAVEI_ 0 0 0 REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;REV__LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.800414 1043.58628 -0.049882 -2.6078E-05 0.1822 9.5256E-05 0.13232 6.9178E-05 522.8003557309909 120.16 0.38323 115.52 115.31 115.69 -4.645 -0.0005521 0.00039814 NaN 26.268 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1534000 + 28759 18047;23811 19210 19218 0.06622592411895312 LSGEMLSY 8 Unmodified _LSGEMLSY_ 0 0 0 REV__FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant REV__FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.11212158203125 2 450.212586 898.410619 NaN NaN NaN NaN NaN NaN NaN 102.19 1 97.999 97.499 98.499 -4.1861 0 0 0 0.21486 1 20081 20081 9.3474 0 1 + 28760 17758 19211 19219 28320 28320 -0.04264945373836326 LSGEPLSRV 9 Unmodified _LSGEPLSRV_ 0 0 0 REV__ENST00000581067.1_1_18:5237732-5237834:-|nuORF REV__ENST00000581067.1_1_18:5237732-5237834:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7234802246094 2 479.271824 956.529095 0.32102 0.00015386 -0.27197 -0.00013035 0.049054 2.351E-05 479.27168550385096 69.33 0.66422 65.94 65.561 66.225 -3.3903 31 18 2 0 0 0 0.58699 1 13141 13141 19.257 8.4331 1 4442300 + 28761 23240 19212 19220 28321 28321 0.04909169926202139 LSGFLVGG 8 Unmodified _LSGFLVGG_ 0 0 0 ENST00000325942.10_1_4:78978964-79158713:+|nuORF;ENST00000508909.5_1_4:78978964-78989771:+|nuORF ENST00000325942.10_1_4:78978964-79158713:+|nuORF ENST00000325942.10_1_4:78978964-79158713:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2132873535156 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 121.24 1 116.69 116.19 117.19 -4.5476 0 0 0 0.2396 1 23899 23899 0.0082765 0 1 28762 8741 19213 19221 28322 28322 0.027670567772588583 LSGFQLGVV 9 Unmodified _LSGFQLGVV_ 0 0 0 REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1 REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.244873046875 2 460.26601 918.517468 0.12982 5.9753E-05 0.25175 0.00011587 0.38157 0.00017562 460.2660346026112 91.294 0.96529 87.486 86.997 87.962 -3.8083 81 27 4 0 0 0 0.40602 1 17561 17561 25.399 0.72543 1 18122000 + 28763 24998 19214 19222 28323 28323 0.05494972902874906 LSGFVGKGVV 10 Unmodified _LSGFVGKGVV_ 0 0 0 REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1 REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7861328125 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 92.191 1 88.266 87.766 88.766 -3.9251 0 0 0 0.22588 1 18052 18052 10.074 1.4806 1 + 28764 19438 19215 19223 28324 28324 0.07734948311247081 LSGGCTHYWQ 10 Unmodified _LSGGCTHYWQ_ 0 0 0 REV__ENSG00000215704|ENST00000375910|CELA2B REV__ENSG00000215704|ENST00000375910|CELA2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3320922851562 2 576.250566 1150.48658 NaN NaN NaN NaN NaN NaN NaN 152.92 1 147.65 147.15 148.15 -5.2669 0 0 0 0.22588 1 29642 29642 10.074 0 1 + 28765 19693 19216 19224 28325 28325 -0.08264548473698596 LSGGEPGGR 9 Unmodified _LSGGEPGGR_ 0 0 0 ENST00000318876.9_1_14:73437074-73437530:-|nuORF ENST00000318876.9_1_14:73437074-73437530:-|nuORF ENST00000318876.9_1_14:73437074-73437530:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.2124938964844 2 415.211766 828.40898 NaN NaN NaN NaN NaN NaN NaN 138.52 1 138.52 138.02 139.02 0 0 0 0 0.19711 1 27505 27505 0.40827 0 1 28766 8696 19217 19225 28326 28326 -0.0120881834757256 LSGGRDVDP 9 Unmodified _LSGGRDVDP_ 0 0 0 tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1 tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1 tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2281188964844 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 91.933 1 88.008 87.508 88.508 -3.9251 0 0 0 0.085372 1 18001 18001 0.40827 0 1 28767 26390 19218 19226 28327 28327 -0.014885665216752386 LSGGRDVDP 9 Unmodified _LSGGRDVDP_ 0 0 0 tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1 tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1 tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2281188964844 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 91.945 1 88.02 87.52 88.52 -3.9251 0 0 0 0.1124 1 18003 18003 36.044 9.1605 1 28768 26390 19218 19226 28328 28328 -0.014885665216752386 LSGKFECKEGF 11 Unmodified _LSGKFECKEGF_ 0 0 0 REV__ENST00000472242.1_1_2:234186198-234191411:+|nuORF REV__ENST00000472242.1_1_2:234186198-234191411:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7810668945312 2 622.802631 1243.59071 NaN NaN NaN NaN NaN NaN NaN 161.63 1 161.63 161.13 162.13 0 0 0 0 0.22943 1 32466 32466 8.7454 2.5396 1 + 28769 13143 19219 19227 28329 28329 -0.021342664368603437 LSGKKSAIPY 10 Unmodified _LSGKKSAIPY_ 0 0 0 ENST00000481087.1_1_1:241712984-241718974:+|nuORF;KMO|p.Q379Sfs*32|1|0.46|ENSG00000117009|chr1:241590042-241590043|-/T|frameshift_variant;KMO|p.K420Rfs*2|1|0.18|ENSG00000117009|chr1:241590256-241590256|A/-|frameshift_variant;nc|ENSG00000117009|O15229-3|KMO;nc|ENSG00000117009|O15229-2|KMO;KMO|p.V421Gfs*65|1|0.29|ENSG00000117009|chr1:241590255-241590256|-/A|frameshift_variant;ENSG00000117009|ENST00000366559|KMO ENST00000481087.1_1_1:241712984-241718974:+|nuORF ENST00000481087.1_1_1:241712984-241718974:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 531.952880859375 2 532.310949 1062.60735 0.16871 8.9809E-05 -0.44737 -0.00023814 -0.27866 -0.00014833 532.3106103634304 150.87 0.62939 146.13 145.71 146.34 -4.7323 26 17 2 0 0 0 0.88533 1 29904 29904 5.2969 2.0156 1 2823500 28770 2969 19220 19228 28330 28330 0.0785460251142922 LSGLAVGFCVE 11 Unmodified _LSGLAVGFCVE_ 0 0 0 ENST00000491763.1_1_3:156544492-156544570:+|nuORF ENST00000491763.1_1_3:156544492-156544570:+|nuORF ENST00000491763.1_1_3:156544492-156544570:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7781982421875 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 138.62 1 138.62 138.12 139.12 0 0 0 0 0.22501 1 27529 27529 12.241 0 1 28771 10532 19221 19229 28331 28331 0.004749635057351043 LSGLCPSSRR 10 Unmodified _LSGLCPSSRR_ 0 0 0 ENST00000544115.1_1_11:102478074-102478158:+|nuORF ENST00000544115.1_1_11:102478074-102478158:+|nuORF ENST00000544115.1_1_11:102478074-102478158:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 359.19329833984375 3 359.19408 1074.56041 NaN NaN NaN NaN NaN NaN NaN 44.623 1 41.833 41.333 42.333 -2.79 0 0 0 0.22588 1 8389 8389 3.3196 0.038334 1 28772 11106 19222 19230 28332 28332 0.0261141968865104 LSGLGLFILY 10 Unmodified _LSGLGLFILY_ 0 0 0 ENSG00000214929|ENST00000344803|SPATA31D1;ENSG00000189357|ENST00000419782|SPATA31D4;ENSG00000186788|ENST00000445385|SPATA31D3 ENSG00000214929|ENST00000344803|SPATA31D1 ENSG00000214929|ENST00000344803|SPATA31D1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7886962890625 2 548.326068 1094.63758 0.41506 0.00022759 -1.5766 -0.00086448 -1.1615 -0.00063689 548.8261504294071 148.85 0.17818 143.79 143.74 143.92 -5.0595 6 4 2 0 0 0 0.86261 1 28851 28851 6.7232 0 1 823170 28773 7736 19223 19231 28333 28333 0.09404961176619508 LSGLLPLAFR 10 Unmodified _LSGLLPLAFR_ 0 0 0 INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant;ENSG00000185085|ENST00000330574|INTS5 INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7935180664062 2 543.837134 1085.65972 NaN NaN NaN NaN NaN NaN NaN 158.28 1 153.49 152.99 153.99 -4.7952 0 0 0 0.22588 1 31475 31475 6.2058 1.4498 1 28774 6958 19224 19232 28334 28334 0.12031185645037112 LSGLMDRQ 8 Unmodified _LSGLMDRQ_ 0 0 0 REV__ENSG00000179604|ENST00000335793|CDC42EP4 REV__ENSG00000179604|ENST00000335793|CDC42EP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2352600097656 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 62.628 1 59.212 58.712 59.712 -3.4158 0 0 0 0.23182 1 11693 11693 0.68139 0 1 + 28775 18662 19225 19233 28335 28335 -0.0031903201407885717 LSGLMDRQ 8 Unmodified _LSGLMDRQ_ 0 0 0 REV__ENSG00000179604|ENST00000335793|CDC42EP4 REV__ENSG00000179604|ENST00000335793|CDC42EP4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2361755371094 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 62.813 1 59.557 59.057 60.057 -3.2567 0 0 0 0.22665 1 11780 11780 1.4551 0.24024 1 + 28776 18662 19225 19233 28336 28336 -0.0031903201407885717 LSGLVDDAEY 10 Unmodified _LSGLVDDAEY_ 0 0 0 REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1 REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2595825195312 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 74.443 1 71.079 70.579 71.579 -3.3643 0 0 0 0.22544 1 14523 14523 19.257 1.1106 1 + 28777 25097 19226 19234 28337 28337 -0.039508676184368596 LSGMASLLQ 9 Unmodified _LSGMASLLQ_ 0 0 0 REV__nc|ENSG00000162572|P51172-1|SCNN1D REV__nc|ENSG00000162572|P51172-1|SCNN1D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2488708496094 2 460.249503 918.484453 NaN NaN NaN NaN NaN NaN NaN 30.042 1 27.968 27.468 28.468 -2.0743 0 0 0 0.22193 1 5127 5127 17.113 1.2657 1 + 28778 17505 19227 19235 28338 28338 0.021950227884985907 LSGPCRVSP 9 Unmodified _LSGPCRVSP_ 0 0 0 REV__ENST00000339562.8_1_2:157189014-157189131:-|nuORF REV__ENST00000339562.8_1_2:157189014-157189131:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.238037109375 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 65.415 1 61.957 61.457 62.457 -3.4581 0 0 0 0.21469 1 12240 12240 19.257 1.122 1 + 28779 20697 19228 19236 28339 28339 0.003732718485366604 LSGPCRVSP 9 Unmodified _LSGPCRVSP_ 0 0 0 REV__ENST00000339562.8_1_2:157189014-157189131:-|nuORF REV__ENST00000339562.8_1_2:157189014-157189131:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384948730469 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 67.305 1 63.978 63.478 64.478 -3.3268 0 0 0 0.22962 1 12687 12687 14.838 0.25658 1 + 28780 20697 19228 19236 28340 28340 0.003732718485366604 LSGPFLIPD 9 Unmodified _LSGPFLIPD_ 0 0 0 REV__ENSG00000091262|ENST00000205557|ABCC6 REV__ENSG00000091262|ENST00000205557|ABCC6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2317810058594 2 479.765843 957.517133 0.1892 9.0769E-05 -0.0093461 -4.4839E-06 0.17985 8.6285E-05 479.7657309416848 158.58 0.93013 153.78 153.3 154.23 -4.7952 49 25 3 0 0 0 0.6329 1 31512 31512 10.824 2.2306 1 2976300 + 28781 14569 19229 19237 28341 28341 0.03667553183004202 LSGPFLIPD 9 Unmodified _LSGPFLIPD_ 0 0 0 REV__ENSG00000091262|ENST00000205557|ABCC6 REV__ENSG00000091262|ENST00000205557|ABCC6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.765843 957.517133 -0.034511 -1.6557E-05 0.11796 5.6595E-05 0.083452 4.0038E-05 479.7658256689274 153.56 0.77635 153.56 153.2 153.97 0 -0.21919 0.00016212 NaN 10.824 38 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2986500 + 28782 14569 19229 19237 0.03667553183004202 LSGPFLIPD 9 Unmodified _LSGPFLIPD_ 0 0 0 REV__ENSG00000091262|ENST00000205557|ABCC6 REV__ENSG00000091262|ENST00000205557|ABCC6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.765843 957.517133 0.1892 9.0769E-05 -0.0093461 -4.4839E-06 0.17985 8.6285E-05 479.7657309416848 158.58 0.93013 153.78 153.3 154.23 -4.7952 -0.00010077 3.9958E-05 NaN 10.824 49 25 3 NaN NaN NaN NaN 0 NaN NaN 0 2976300 + 28783 14569 19229 19237 0.03667553183004202 LSGPFLIPD 9 Unmodified _LSGPFLIPD_ 0 0 0 REV__ENSG00000091262|ENST00000205557|ABCC6 REV__ENSG00000091262|ENST00000205557|ABCC6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.765843 957.517133 0.1872 8.9812E-05 0.035688 1.7122E-05 0.22289 0.00010693 479.7657909272539 159.32 0.89395 154.04 153.4 154.29 -5.2748 0.26035 8.3169E-05 NaN 10.824 43 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2491800 + 28784 14569 19229 19237 0.03667553183004202 LSGPFLIPD 9 Unmodified _LSGPFLIPD_ 0 0 0 REV__ENSG00000091262|ENST00000205557|ABCC6 REV__ENSG00000091262|ENST00000205557|ABCC6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 479.765843 957.517133 0.40506 0.00019434 -0.36219 -0.00017377 0.042873 2.0569E-05 479.7656290748801 159.01 1.0155 153.74 153.3 154.31 -5.2712 -0.041062 -0.00029861 NaN 10.824 41 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1909600 + 28785 14569 19229 19237 0.03667553183004202 LSGPIVPEPLE 11 Unmodified _LSGPIVPEPLE_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3236083984375 2 575.821347 1149.62814 0.32732 0.00018848 2.7395 0.0015775 3.0669 0.001766 575.8236649486034 122 0.21993 117.47 117.4 117.62 -4.5305 6 5 2 0 0 0 0.89764 1 23504 23504 4.897 0 1 1655600 + 28786 14014 19230 19238 28342 28342 0.05931148100444261 LSGPIYLIFE 10 Unmodified _LSGPIYLIFE_ 0 0 0 nc|ENSG00000122025|P36888-2|FLT3;ENSG00000122025|ENST00000241453|FLT3 nc|ENSG00000122025|P36888-2|FLT3 nc|ENSG00000122025|P36888-2|FLT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3191528320312 2 576.320983 1150.62741 0.31825 0.00018342 2.5039 0.0014431 2.8222 0.0016265 576.8253458427585 145.38 0.24664 140.43 140.24 140.48 -4.9445 9 6 3 0 0 0 0.87854 1 28081 28081 5.7319 0.43497 1 2583500 28787 3205 19231 19239 28343 28343 0.058123534513924824 LSGPMYYTSLL 11 Unmodified _LSGPMYYTSLL_ 0 0 0 REV__ZNF74|p.V598M|1|0.11|ENSG00000185252|chr22:20406825-20406825|G/A|missense_variant REV__ZNF74|p.V598M|1|0.11|ENSG00000185252|chr22:20406825-20406825|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7761840820312 2 622.815207 1243.61586 NaN NaN NaN NaN NaN NaN NaN 154.59 1 154.59 154.09 155.09 0 0 0 0 0.22943 1 30984 30984 8.7454 0 1 + 28788 25591 19232 19240 28344 28344 0.0037978836573984154 LSGPPMQYMQ 10 Unmodified _LSGPPMQYMQ_ 0 0 0 REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.322021484375 2 576.264827 1150.5151 NaN NaN NaN NaN NaN NaN NaN 162.96 1 157.82 157.32 158.32 -5.1438 0 0 0 0.22588 1 31684 31684 6.7232 0 1 + 28789 15089 19233 19241 28345 28345 -0.054135668887738575 LSGPTLTTPA 10 Unmodified _LSGPTLTTPA_ 0 0 0 ENST00000564976.5_1_16:70218720-70220427:+|nuORF ENST00000564976.5_1_16:70218720-70220427:+|nuORF ENST00000564976.5_1_16:70218720-70220427:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7385559082031 2 479.266207 956.517862 0.14844 7.1143E-05 0.088695 4.2509E-05 0.23714 0.00011365 479.2662291103939 129.25 0.69757 124.51 124.16 124.85 -4.7408 26 19 2 0 0 0 0.871 1 24809 24809 10.074 0 1 1730900 28790 11350 19234 19242 28346 28346 0.03786347832044612 LSGQQQRLLAF 11 Unmodified _LSGQQQRLLAF_ 0 0 0 ENST00000578759.1_1_17:60214444-60217453:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT ENST00000578759.1_1_17:60214444-60217453:-|nuORF ENST00000578759.1_1_17:60214444-60217453:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.757568359375 2 630.856586 1259.69862 0.41166 0.0002597 -4.2473 -0.0026795 -3.8357 -0.0024198 631.3569343866448 162.84 0.17773 162.84 162.72 162.9 0 6 4 2 0 0 0 0.90723 1 32754 32754 11.495 0.6952 1 10008000 28791 1902 19235 19243 28347 28347 0.07915866208759326 LSGRLHVFIY 10 Unmodified _LSGRLHVFIY_ 0 0 0 ENST00000290524.8_2_1:151313240-151313396:-|nuORF ENST00000290524.8_2_1:151313240-151313396:-|nuORF ENST00000290524.8_2_1:151313240-151313396:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3009033203125 2 602.84549 1203.67643 0.44832 0.00027027 -2.0465 -0.0012337 -1.5982 -0.00096347 602.8435283871366 151.65 0.1703 146.48 146.38 146.55 -5.1759 6 4 2 0 0 0 0.8888 1 29389 29389 1.6526 0 1 2652300 28792 8473 19236 19244 28348 28348 0.08273686531015301 LSGRLTQPG 9 Unmodified _LSGRLTQPG_ 0 0 0 REV__ENST00000503823.5_2_4:20255137-20255392:+|nuORF REV__ENST00000503823.5_2_4:20255137-20255392:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2374572753906 2 464.764166 927.513779 0.31632 0.00014701 -0.46241 -0.00021491 -0.1461 -6.79E-05 464.76393219799894 28.417 0.28031 26.421 26.238 26.519 -1.9962 11 7 2 0 0 0 0.65153 1 4779 4779 13.906 0 1 324150 + 28793 22458 19237 19245 28349 28349 0.04712303128997064 LSGRLTQPG 9 Unmodified _LSGRLTQPG_ 0 0 0 REV__ENST00000503823.5_2_4:20255137-20255392:+|nuORF REV__ENST00000503823.5_2_4:20255137-20255392:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.764166 927.513779 0.21918 0.00010187 -0.29159 -0.00013552 -0.07241 -3.3654E-05 464.7638866612159 28.175 0.31796 26.42 26.247 26.565 -1.7552 -0.00068571 9.0649E-05 NaN 13.906 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 425900 + 28794 22458 19237 19245 0.04712303128997064 LSGRLTQPG 9 Unmodified _LSGRLTQPG_ 0 0 0 REV__ENST00000503823.5_2_4:20255137-20255392:+|nuORF REV__ENST00000503823.5_2_4:20255137-20255392:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.764166 927.513779 0.31632 0.00014701 -0.46241 -0.00021491 -0.1461 -6.79E-05 464.76393219799894 28.417 0.28031 26.421 26.238 26.519 -1.9962 0.00068571 -6.8139E-05 NaN 13.906 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 324150 + 28795 22458 19237 19245 0.04712303128997064 LSGSKILLN 9 Unmodified _LSGSKILLN_ 0 0 0 REV__tr|U7SUH9|U7SUH9_FUSNUthiaminediphosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01164PE=4SV=1 REV__tr|U7SUH9|U7SUH9_FUSNUthiaminediphosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01164PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.1996154785156 3 315.530687 943.570232 -0.39323 -0.00012408 0.2119 6.6861E-05 -0.18133 -5.7214E-05 315.53067324401735 42.854 0.53084 40.135 39.877 40.408 -2.7191 27 14 3 0 0 0 0.78323 1 8021 8021 2.4985 0 1 2364800 + 28796 25169 19238 19246 28350 28350 0.09618930965677919 LSGSKILLN 9 Unmodified _LSGSKILLN_ 0 0 0 REV__tr|U7SUH9|U7SUH9_FUSNUthiaminediphosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01164PE=4SV=1 REV__tr|U7SUH9|U7SUH9_FUSNUthiaminediphosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01164PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 315.530687 943.570232 -0.32666 -0.00010307 0.28394 8.9592E-05 -0.042717 -1.3479E-05 315.53070818803195 40.318 0.35746 40.318 40.066 40.424 0 0.13453 0.00011105 NaN 2.4985 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1407600 + 28797 25169 19238 19246 0.09618930965677919 LSGSKILLN 9 Unmodified _LSGSKILLN_ 0 0 0 REV__tr|U7SUH9|U7SUH9_FUSNUthiaminediphosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01164PE=4SV=1 REV__tr|U7SUH9|U7SUH9_FUSNUthiaminediphosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01164PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 315.530687 943.570232 -0.049814 -1.5718E-05 -0.24114 -7.6087E-05 -0.29095 -9.1804E-05 315.5305734159752 42.749 0.47799 40.098 39.92 40.398 -2.651 -0.08517 -0.00038599 NaN 2.4985 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2491000 + 28798 25169 19238 19246 0.09618930965677919 LSGSKILLN 9 Unmodified _LSGSKILLN_ 0 0 0 REV__tr|U7SUH9|U7SUH9_FUSNUthiaminediphosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01164PE=4SV=1 REV__tr|U7SUH9|U7SUH9_FUSNUthiaminediphosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01164PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 315.530687 943.570232 -0.69581 -0.00021955 0.41675 0.0001315 -0.27906 -8.8051E-05 315.53079517179344 42.789 0.44825 40.183 39.932 40.38 -2.606 -0.00086814 0.00023677 NaN 2.4985 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2185000 + 28799 25169 19238 19246 0.09618930965677919 LSGSPAMRP 9 Unmodified _LSGSPAMRP_ 0 0 0 REV__ENST00000544944.6_1_19:45542853-45543099:+|nuORF REV__ENST00000544944.6_1_19:45542853-45543099:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2387390136719 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 77.631 1 77.631 77.131 78.131 0 0 0 0 0.22621 1 15096 15096 15.847 2.3393 1 + 28800 22884 19239 19247 28351 28351 0.003732718485366604 LSGSQFAAAE 10 Unmodified _LSGSQFAAAE_ 0 0 0 REV__nc|ENSG00000064270|O75185-2|ATP2C2 REV__nc|ENSG00000064270|O75185-2|ATP2C2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2751159667969 2 490.737814 979.461075 0.48204 0.00023655 -2.1272 -0.0010439 -1.6452 -0.00080736 490.73776105370524 44.723 1.5415 44.723 44.323 45.864 0 71 43 2 0 0 0 0.41575 1 8379 8379 29.082 0.59474 1 5264600 + 28801 23943 19240 19248 28352 28352 -0.02947699724472841 LSGSQFAAAE 10 Unmodified _LSGSQFAAAE_ 0 0 0 REV__nc|ENSG00000064270|O75185-2|ATP2C2 REV__nc|ENSG00000064270|O75185-2|ATP2C2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2554016113281 2 490.737814 979.461075 0.087245 4.2815E-05 -1.0536 -0.00051703 -0.96632 -0.00047421 490.73795142863963 47.632 1.4707 44.69 44.342 45.813 -2.9421 83 41 3 0 0 0 0.52179 1 8694 8694 26.268 4.5215 1 7134000 + 28802 23943 19240 19248 28353 28353 -0.02947699724472841 LSGTASHAGGV 11 Unmodified _LSGTASHAGGV_ 0 0 0 ENST00000254998.2_1_20:23331562-23334670:+|nuORF ENST00000254998.2_1_20:23331562-23334670:+|nuORF ENST00000254998.2_1_20:23331562-23334670:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74249267578125 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 19.319 1 19.319 18.819 19.819 0 0 0 0 0.224 1 3153 3153 13.042 0 1 28803 8250 19241 19249 28354 28354 -0.007208776303173181 LSGTKLKPL 9 Unmodified _LSGTKLKPL_ 0 0 0 REV__ENSG00000215906|ENST00000426928|LACTBL1 REV__ENSG00000215906|ENST00000426928|LACTBL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7362060546875 2 478.810585 955.606617 -0.33519 -0.00016049 -0.14519 -6.9521E-05 -0.48039 -0.00023002 478.8105830013249 57.92 0.31593 57.92 57.825 58.141 0 13 8 2 0 0 0 0.82765 1 11072 11072 5.7319 0 1 646080 + 28804 19695 19242 19250 28355 28355 0.12703807862362737 LSGTSGYMSAP 11 Unmodified _LSGTSGYMSAP_ 0 0 0 REV__PSD|p.G198Afs*19|2|0.38|ENSG00000059915|chr10:102416446-102416446|C/-|frameshift_variant REV__PSD|p.G198Afs*19|2|0.38|ENSG00000059915|chr10:102416446-102416446|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 535.7459106445312 2 535.744782 1069.47501 NaN NaN NaN NaN NaN NaN NaN 166.96 1 162.02 161.52 162.52 -4.948 0 0 0 0.23324 1 32790 32790 5.7319 0.50118 1 + 28805 14140 19243 19251 28356 28356 -0.05694790287680007 LSGTYFEV 8 Unmodified _LSGTYFEV_ 0 0 0 ENSG00000128536|ENST00000317716|CDHR3 ENSG00000128536|ENST00000317716|CDHR3 ENSG00000128536|ENST00000317716|CDHR3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2261047363281 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 92.069 1 87.974 87.474 88.474 -4.0946 0 0 0 0.10916 1 17538 17538 0.68139 0 1 28806 3527 19244 19252 28357 28357 -0.022092991220915792 LSGVRVIRF 9 Unmodified _LSGVRVIRF_ 0 0 0 HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|74|1|anti-sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|74|1|anti-sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|74|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6829833984375 2 523.827101 1045.63965 NaN NaN NaN NaN NaN NaN NaN 159.39 1 154.11 153.61 154.61 -5.2748 0 0 0 0.23508 1 30934 30934 7.2892 2.0586 1 28807 11897 19245 19253 28358 28358 0.11865434705100597 LSGYFLSVSL 10 Unmodified _LSGYFLSVSL_ 0 0 0 REV__ENSG00000232382|ENST00000642057|OR5K1 REV__ENSG00000232382|ENST00000642057|OR5K1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7711791992188 2 543.297507 1084.58046 0.34241 0.00018603 -0.43917 -0.0002386 -0.096764 -5.2571E-05 543.2972801656337 155.64 0.51736 155.64 155.38 155.9 0 22 14 2 0 0 0 0.44731 1 31206 31206 27.629 0.74515 1 4005500 + 28808 19752 19246 19254 28359 28359 0.04155493900225338 LSGYFLSVSL 10 Unmodified _LSGYFLSVSL_ 0 0 0 REV__ENSG00000232382|ENST00000642057|OR5K1 REV__ENSG00000232382|ENST00000642057|OR5K1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7931518554688 2 543.297507 1084.58046 0.53774 0.00029215 0.0083246 4.5227E-06 0.54607 0.00029668 543.7992795790727 161.17 0.59554 155.92 155.56 156.16 -5.2526 29 16 3 0 0 0 0.34654 1 31296 31296 34.402 3.6983 1 3312100 + 28809 19752 19246 19254 28360 28360 0.04155493900225338 LSGYLISHR 9 Unmodified _LSGYLISHR_ 0 0 0 REV__ENST00000498262.1_1_1:244998983-245005526:+|nuORF REV__ENST00000498262.1_1_1:244998983-245005526:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6823120117188 2 523.293091 1044.57163 -0.12532 -6.5577E-05 1.8926 0.00099038 1.7673 0.0009248 523.7967465380362 143.24 0.21503 138.59 138.5 138.72 -4.656 7 5 2 0 0 0 0.77734 1 28334 28334 9.3831 0 1 2613400 + 28810 19494 19247 19255 28361 28361 0.05112565054423612 LSGYNLNAQ 9 Unmodified _LSGYNLNAQ_ 0 0 0 REV__nc|ENSG00000137145|Q5VZ89|DENND4C REV__nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2751159667969 2 490.245806 978.47706 0.46059 0.0002258 -0.12986 -6.3663E-05 0.33073 0.00016214 490.2457466413081 44.215 1.2421 44.215 43.397 44.639 0 49 35 2 0 0 0 0.19171 1 8379 8379 38.176 5.8701 1 1176300 + 28811 16378 19248 19256 28362 28362 -0.013039934875905601 LSGYYNHYY 9 Unmodified _LSGYYNHYY_ 0 0 0 REV__ENSG00000206106|ENST00000382830|KRTAP22-2 REV__ENSG00000206106|ENST00000382830|KRTAP22-2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2537231445312 2 590.258914 1178.50327 NaN NaN NaN NaN NaN NaN NaN 149.04 1 144.33 143.83 144.83 -4.7095 0 0 0 0.23508 1 29598 29598 4.756 0 1 + 28812 19614 19249 19257 28363 28363 -0.07883724316116059 LSGYYNHYY 9 Unmodified _LSGYYNHYY_ 0 0 0 REV__ENSG00000206106|ENST00000382830|KRTAP22-2 REV__ENSG00000206106|ENST00000382830|KRTAP22-2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2620239257812 2 590.258914 1178.50327 NaN NaN NaN NaN NaN NaN NaN 142.21 1 137.31 136.81 137.81 -4.8982 0 0 0 0.23508 1 27439 27439 4.756 0 1 + 28813 19614 19249 19257 28364 28364 -0.07883724316116059 LSHDWGFQP 9 Unmodified _LSHDWGFQP_ 0 0 0 REV__ENSG00000198876|ENST00000361264|DCAF12 REV__ENSG00000198876|ENST00000361264|DCAF12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79541015625 2 543.753798 1085.49304 NaN NaN NaN NaN NaN NaN NaN 161.24 1 161.24 160.74 161.74 0 0 0 0 0.23508 1 32382 32382 11.64 1.5664 1 + 28814 19470 19250 19258 28365 28365 -0.04628287250670837 LSHGPRKIK 9 Unmodified _LSHGPRKIK_ 0 0 0 ENST00000488285.1_1_9:130486913-130493681:+|nuORF;ENSG00000167094|ENST00000373289|TTC16;ENST00000489226.5_1_9:130492547-130493681:+|nuORF ENST00000488285.1_1_9:130486913-130493681:+|nuORF ENST00000488285.1_1_9:130486913-130493681:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 518.1287841796875 2 518.324725 1034.6349 0.20794 0.00010778 -1.3322 -0.00069052 -1.1243 -0.00058274 518.8258932395194 138.12 0.20984 138.12 137.97 138.18 0 7 5 2 0 0 0 0.87511 1 27420 27420 3.9444 0 1 4886100 28815 5780 19251 19259 28366 28366 0.11896550562300945 LSHHIESIE 9 Unmodified _LSHHIESIE_ 0 0 0 REV__ENST00000465486.6_1_9:134065776-134072618:+|nuORF REV__ENST00000465486.6_1_9:134065776-134072618:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2756958007812 2 532.772188 1063.52982 0.60878 0.00032434 1.7681 0.00094201 2.3769 0.0012663 532.7730676876222 93.812 0.54489 89.668 89.38 89.925 -4.1435 16 15 2 0 0 0 0.48644 1 17867 17867 20.454 3.5113 1 723500 + 28816 21950 19252 19260 28367 28367 0.0005996457521177945 LSHHIESIE 9 Unmodified _LSHHIESIE_ 0 0 0 REV__ENST00000465486.6_1_9:134065776-134072618:+|nuORF REV__ENST00000465486.6_1_9:134065776-134072618:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27490234375 2 532.772188 1063.52982 0.60878 0.00032434 1.7681 0.00094201 2.3769 0.0012663 532.7730676876222 93.812 0.54489 89.668 89.38 89.925 -4.1435 16 15 2 0 0 0 0.65155 1 17931 17931 15.847 0 1 723500 + 28817 21950 19252 19260 28368 28368 0.0005996457521177945 LSHKKREAKRR 11 Unmodified _LSHKKREAKRR_ 0 0 0 REV__ENSG00000070061|ENST00000374647|ELP1 REV__ENSG00000070061|ENST00000374647|ELP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 704.994140625 2 704.934025 1407.8535 NaN NaN NaN NaN NaN NaN NaN 166.76 1 166.76 166.26 167.26 0 0 0 0 0.22632 1 34011 34011 0.00056442 0 1 + 28818 14250 19253 19261 28369 28369 0.1658853513381473 LSHKPGNY 8 Unmodified _LSHKPGNY_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L;REV__nc|ENSG00000147133|P21675-23|TAF1 REV__ENSG00000122728|ENST00000242310|TAF1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2388916015625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 70.448 1 70.448 69.948 70.948 0 0 0 0 0.21452 1 13647 13647 13.508 1.8676 1 + 28819 15703;16921 19254 19262 28370 28370 0.00036345066178000707 LSHKPGNY 8 Unmodified _LSHKPGNY_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L;REV__nc|ENSG00000147133|P21675-23|TAF1 REV__ENSG00000122728|ENST00000242310|TAF1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2380065917969 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 117 1 117 116.5 117.5 0 0 0 0 0.21452 1 23043 23043 13.508 0.97634 1 + 28820 15703;16921 19254 19262 28371 28371 0.00036345066178000707 LSHKPGNYTA 10 Unmodified _LSHKPGNYTA_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L;REV__nc|ENSG00000147133|P21675-23|TAF1 REV__ENSG00000122728|ENST00000242310|TAF1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7876586914062 2 544.28018 1086.54581 -0.44586 -0.00024267 0.71211 0.00038759 0.26624 0.00014491 544.2804838506808 22.681 0.51295 20.892 20.643 21.156 -1.7886 22 14 2 0 0 0 0.90598 1 3597 3597 5.7319 1.4026 1 649430 + 28821 15703;16921 19255 19263 28372 28372 0.005996708121301708 LSHLLVKL 8 Unmodified _LSHLLVKL_ 0 0 0 REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5289306640625 2 461.807845 921.601138 NaN NaN NaN NaN NaN NaN NaN 30.386 1 30.386 29.886 30.886 0 0 0 0 0.21486 1 5458 5458 2.3027 0 1 + 28822 15279 19256 19264 28373 28373 0.13720129070577514 LSHLPALVLQL 11 Unmodified _LSHLPALVLQL_ 0 0 0 REV__ENSG00000172889|ENST00000308874|EGFL7 REV__ENSG00000172889|ENST00000308874|EGFL7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2849731445312 2 602.376623 1202.73869 NaN NaN NaN NaN NaN NaN NaN 152.95 1 148.19 147.69 148.69 -4.7684 0 0 0 0.23379 1 30393 30393 5.2969 0.39987 1 + 28823 18315 19257 19265 28374 28374 0.1454341287931129 LSHLPSLY 8 Unmodified _LSHLPSLY_ 0 0 0 ENSG00000112936|ENST00000313164|C7 ENSG00000112936|ENST00000313164|C7 ENSG00000112936|ENST00000313164|C7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24951171875 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 64.023 1 60.607 60.107 61.107 -3.4158 0 0 0 0.21039 1 11973 11973 16.942 2.3606 1 28824 2717 19258 19266 28375 28375 0.03470686385810495 LSHLPSLY 8 Unmodified _LSHLPSLY_ 0 0 0 ENSG00000112936|ENST00000313164|C7 ENSG00000112936|ENST00000313164|C7 ENSG00000112936|ENST00000313164|C7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2581787109375 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 54.897 1 51.759 51.259 52.259 -3.1377 0 0 0 0.20294 1 10174 10174 23.148 2.2772 1 28825 2717 19258 19266 28376 28376 0.03470686385810495 LSHLQEAIQL 10 Unmodified _LSHLQEAIQL_ 0 0 0 ENST00000475650.1_1_16:30370373-30370970:-|nuORF ENST00000475650.1_1_16:30370373-30370970:-|nuORF ENST00000475650.1_1_16:30370373-30370970:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3245239257812 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 65.709 1 65.709 65.209 66.209 0 0 0 0 2.8426 1 12679 12679 3.8763 1.3778 1 28826 10275 19259 19267 28377 28377 0.06533086051808823 LSHLRHLGPG 10 Unmodified _LSHLRHLGPG_ 0 0 0 ENST00000533407.6_1_11:6422737-6440257:-|nuORF ENST00000533407.6_1_11:6422737-6440257:-|nuORF ENST00000533407.6_1_11:6422737-6440257:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7706909179688 2 543.811982 1085.60941 NaN NaN NaN NaN NaN NaN NaN 79.509 1 79.509 79.009 80.009 0 0 0 0 0.22588 1 15471 15471 11.64 2.2572 1 28827 10994 19260 19268 28378 28378 0.07003076039904954 LSHLWIARE 9 Unmodified _LSHLWIARE_ 0 0 0 REV__ENST00000506274.1_1_4:88140723-88140870:-|nuORF REV__ENST00000506274.1_1_4:88140723-88140870:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.221923828125 3 375.545219 1123.61383 -2.1858 -0.00082087 -2.2884 -0.00085939 -4.4742 -0.0016803 375.54417307157036 16.187 0.41137 14.833 14.581 14.993 -1.3534 20 11 3 0 0 0 0.64397 1 2279 2279 24.991 2.3329 1 964920 + 28828 22488 19261 19269 28379 28379 0.056965404627817406 LSHMGNSK 8 Unmodified _LSHMGNSK_ 0 0 0 REV__ENSG00000167721|ENST00000301364|TSR1 REV__ENSG00000167721|ENST00000301364|TSR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21636962890625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 86.949 1 86.949 86.449 87.449 0 0 0 0 0.20462 1 16970 16970 21.747 0 1 + 28829 17962 19262 19270 28380 28380 -0.023875877025943737 LSHNCNQL 8 Unmodified _LSHNCNQL_ 0 0 0 REV__ENST00000332981.9_1_14:62016523-62016595:+|nuORF REV__ENST00000332981.9_1_14:62016523-62016595:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24102783203125 2 464.718901 927.42325 -0.26132 -0.00012144 -0.60573 -0.0002815 -0.86705 -0.00040294 464.7185245641055 112.59 0.7673 108.14 107.77 108.54 -4.4539 27 21 2 0 0 0 0.81042 1 22140 22140 23.148 9.6405 1 2319300 + 28830 20634 19263 19271 28381 28381 -0.0433648919092775 LSHNGHTY 8 Unmodified _LSHNGHTY_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2567443847656 2 464.717216 927.419879 -0.047061 -2.187E-05 0.081725 3.7979E-05 0.034664 1.6109E-05 464.7171534693216 78.39 0.48762 74.623 74.283 74.771 -3.7664 17 13 2 0 0 0 0.95515 1 14876 14876 15.847 0 1 1038300 + 28831 18334 19264 19272 28382 28382 -0.04673415973297779 LSHNTMMK 8 Unmodified _LSHNTMMK_ 0 0 0 ENSG00000172399|ENST00000307128|MYOZ2 ENSG00000172399|ENST00000307128|MYOZ2 ENSG00000172399|ENST00000307128|MYOZ2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2317199707031 2 481.23333 960.452107 NaN NaN NaN NaN NaN NaN NaN 7.4178 1 6.403 5.903 6.903 -1.0148 0 0 0 0.21486 1 594 594 0.69038 0 1 28832 6218 19265 19273 28383 28383 -0.02970087886149031 LSHNWYDPND 10 Unmodified _LSHNWYDPND_ 0 0 0 REV__nc|ENSG00000178568|Q15303-4|ERBB4 REV__nc|ENSG00000178568|Q15303-4|ERBB4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7723999023438 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 134.61 1 129.79 129.29 130.29 -4.8175 0 0 0 0.22588 1 25915 25915 12.241 6.5088 1 + 28833 18611 19266 19274 28384 28384 -0.09866428781083414 LSHPCIPTI 9 Unmodified _LSHPCIPTI_ 0 0 0 REV__nc|ENSG00000008130|O95544-3|NADK REV__nc|ENSG00000008130|O95544-3|NADK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26507568359375 2 490.76532 979.516088 0.10824 5.312E-05 -0.075613 -3.7108E-05 0.032625 1.6011E-05 490.765248607554 112.94 0.7103 108.41 108.04 108.75 -4.5259 30 19 2 0 0 0 0.79204 1 21622 21622 7.2892 0 1 1636400 + 28834 23925 19267 19275 28385 28385 0.02551015542451296 LSHSLTRLPQ 10 Unmodified _LSHSLTRLPQ_ 0 0 0 REV__ENST00000439308.6_1_22:50682948-50683011:-|nuORF REV__ENST00000439308.6_1_22:50682948-50683011:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3284912109375 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 162.27 1 157.13 156.63 157.63 -5.1438 0 0 0 0.22588 1 31519 31519 12.241 0 1 + 28835 21694 19268 19276 28386 28386 0.07655908145943613 LSHSSSVDP 9 Unmodified _LSHSSSVDP_ 0 0 0 REV__ENSG00000120071|ENST00000432791|KANSL1 REV__ENSG00000120071|ENST00000432791|KANSL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2579650878906 2 464.722164 927.429775 -0.029436 -1.368E-05 -0.97098 -0.00045124 -1.0004 -0.00046492 464.7217371117178 61.411 1.0738 58.45 58.071 59.145 -2.9614 51 30 2 0 0 0 0.47479 1 11826 11826 24.021 5.8742 1 3479800 + 28836 15609 19269 19277 28387 28387 -0.036842727585622015 LSIDVSRRQDP 11 Unmodified _LSIDVSRRQDP_ 0 0 0 REV__PLEKHA7|p.F802Sfs*21|2|0.18|ENSG00000166689|chr11:16800978-16800978|A/-|frameshift_variant REV__PLEKHA7|p.F802Sfs*21|2|0.18|ENSG00000166689|chr11:16800978-16800978|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 643.4800415039062 2 643.346583 1284.67861 NaN NaN NaN NaN NaN NaN NaN 166.41 1 161.46 160.96 161.96 -4.9484 0 0 0 0.22632 1 32606 32606 0.172 0 1 + 28837 17865 19270 19278 28388 28388 0.04766070478126494 LSIFGTFSG 9 Unmodified _LSIFGTFSG_ 0 0 0 REV__tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 REV__tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 152.78 1 147.51 147.01 148.01 -5.2669 0 0 0 0.19622 1 29617 29617 0.073264 0 1 + 28838 24904 19271 19279 28389 28389 0.003546936318684857 LSIGSVLAMR 10 Unmodified _LSIGSVLAMR_ 0 0 0 REV__nc|ENSG00000124222|O14662-2|STX16 REV__nc|ENSG00000124222|O14662-2|STX16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6968383789062 2 523.804977 1045.5954 NaN NaN NaN NaN NaN NaN NaN 146.52 1 141.41 140.91 141.91 -5.1108 0 0 0 0.22566 1 28338 28338 16.149 3.9084 1 + 28839 15766 19272 19280 28390 28390 0.07442662496555386 LSIGSVLAMR 10 Unmodified _LSIGSVLAMR_ 0 0 0 REV__nc|ENSG00000124222|O14662-2|STX16 REV__nc|ENSG00000124222|O14662-2|STX16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.677978515625 2 523.804977 1045.5954 0.34199 0.00017914 0.10955 5.7383E-05 0.45154 0.00023652 523.805025404145 143.4 1.0851 138.5 137.7 138.79 -4.8982 43 30 2 0 0 0 0.86856 1 27552 27552 11.495 5.7629 1 2720800 + 28840 15766 19272 19280 28391 28391 0.07442662496555386 LSIHVSVPQ 9 Unmodified _LSIHVSVPQ_ 0 0 0 SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant;nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG;SPEG|p.S1915Vfs*324|1|0.21|ENSG00000072195|chr2:219483200-219483200|C/-|frameshift_variant;SPEG|p.Q2233Rfs*6|2|0.25|ENSG00000072195|chr2:219484154-219484154|C/-|frameshift_variant;SPEG|p.M1971Wfs*268|1|0.31|ENSG00000072195|chr2:219483369-219483369|C/-|frameshift_variant;SPEG|p.R2315Qfs*8|1|0.31|ENSG00000072195|chr2:219484399-219484400|-/C|frameshift_variant;SPEG|p.P2584Qfs*35|1|0.09|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant;SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant;SPEG|p.T870Pfs*11|1|0.35|ENSG00000072195|chr2:219462043-219462043|C/-|frameshift_variant;SPEG|p.T870Hfs*52|1|0.36|ENSG00000072195|chr2:219462042-219462043|-/C|frameshift_variant;SPEG|p.R1307Gfs*12|1|0.34|ENSG00000072195|chr2:219472303-219472303|C/-|frameshift_variant SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2724914550781 2 490.282192 978.549831 NaN NaN NaN NaN NaN NaN NaN 143.95 1 143.95 143.45 144.45 0 0 0 0 0.23508 1 28746 28746 10.824 1.4765 1 28841 1461 19273 19281 28392 28392 0.05969760305856653 LSIIRRKLQKK 11 Unmodified _LSIIRRKLQKK_ 0 0 0 nc|ENSG00000166436|O15016-2|TRIM66;nc|ENSG00000166436|O15016|TRIM66;ENSG00000166436|ENST00000646038|TRIM66;ENST00000525788.1_1_11:8639545-8642109:-|nuORF nc|ENSG00000166436|O15016-2|TRIM66 nc|ENSG00000166436|O15016-2|TRIM66 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 691.9720458984375 2 691.969545 1381.92454 NaN NaN NaN NaN NaN NaN NaN 175.05 1 170.26 169.76 170.76 -4.7898 0 0 0 0.23698 1 35783 35783 1.1933 0 1 28842 5722 19274 19282 28393 28393 0.248852351186315 LSIKKVDVSY 10 Unmodified _LSIKKVDVSY_ 0 0 0 REV__CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant REV__CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3345947265625 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 65.963 1 62.504 62.004 63.004 -3.4581 0 0 0 0.22576 1 12353 12353 14.838 2.3067 1 + 28843 13263 19275 19283 28394 28394 0.09047140854386271 LSIKLKLTQ 9 Unmodified _LSIKLKLTQ_ 0 0 0 REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 349.1944885253906 3 348.56562 1042.67503 0.0463 1.6139E-05 -0.25719 -8.9649E-05 -0.21089 -7.3511E-05 348.5654766192322 47.266 0.63141 47.266 46.946 47.577 0 50 17 4 0 0 0 0.10537 1 8933 8933 43.982 0 1 8764800 + 28844 21262 19276 19284 28395 28395 0.15540052442202068 LSIKLNRML 9 Unmodified _LSIKLNRML_ 0 0 0 REV__ENST00000446618.1_1_22:19245879-19246326:+|nuORF REV__ENST00000446618.1_1_22:19245879-19246326:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7791137695312 2 544.336444 1086.65834 0.33052 0.00017992 3.0125 0.0016398 3.3431 0.0018198 544.3363995091443 123.23 0.17888 123.23 123.13 123.31 0 5 4 2 0 0 0 0.8319 1 24290 24290 1.8442 0.19162 1 855560 + 28845 21763 19277 19285 28396 28396 0.11847228284614175 LSIKPLGAISP 11 Unmodified _LSIKPLGAISP_ 0 0 0 PDZD8|p.N638Mfs*5|1|0.14|ENSG00000165650|chr10:117284820-117284820|T/-|frameshift_variant;PDZD8|p.K969Tfs*12|1|0.27|ENSG00000165650|chr10:117283826-117283827|TT/-|frameshift_variant;PDZD8|p.E1125Dfs*4|1|0.02|ENSG00000165650|chr10:117283358-117283359|-/A|frameshift_variant;ENSG00000165650|ENST00000334464|PDZD8 PDZD8|p.N638Mfs*5|1|0.14|ENSG00000165650|chr10:117284820-117284820|T/-|frameshift_variant PDZD8|p.N638Mfs*5|1|0.14|ENSG00000165650|chr10:117284820-117284820|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7874145507812 2 548.342249 1094.66995 0.66127 0.0003626 4.2549 0.0023332 4.9162 0.0026958 548.8455908817027 47.882 0.17846 47.882 47.751 47.929 0 6 4 2 0 0 0 0.88907 1 9036 9036 0.026206 0.022825 1 534790 28846 5647 19278 19286 28397 28397 0.12639748579613297 LSILLKRKRF 10 Unmodified _LSILLKRKRF_ 0 0 0 REV__ENST00000391974.3_1_1:198190099-198190180:+|nuORF REV__ENST00000391974.3_1_1:198190099-198190180:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2515563964844 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 28.413 1 28.413 27.913 28.913 0 0 0 0 2.8426 1 5044 5044 0.043787 0 1 + 28847 21207 19279 19287 28398 28398 0.21390489652821998 LSILLKRKRF 10 Unmodified _LSILLKRKRF_ 0 0 0 REV__ENST00000391974.3_1_1:198190099-198190180:+|nuORF REV__ENST00000391974.3_1_1:198190099-198190180:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.23687744140625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 141.71 1 141.71 141.21 142.21 0 0 0 0 0.22588 1 28246 28246 0.77653 0.078866 1 + 28848 21207 19279 19287 28399 28399 0.21390489652821998 LSILLKRKRF 10 Unmodified _LSILLKRKRF_ 0 0 0 REV__ENST00000391974.3_1_1:198190099-198190180:+|nuORF REV__ENST00000391974.3_1_1:198190099-198190180:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2530212402344 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 71.883 1 68.572 68.072 69.072 -3.3107 0 0 0 0.22588 1 14003 14003 0.69767 0.24315 1 + 28849 21207 19279 19287 28400 28400 0.21390489652821998 LSILLKRKRF 10 Unmodified _LSILLKRKRF_ 0 0 0 REV__ENST00000391974.3_1_1:198190099-198190180:+|nuORF REV__ENST00000391974.3_1_1:198190099-198190180:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2551574707031 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 133.59 1 128.72 128.22 129.22 -4.8726 0 0 0 0.22588 1 25670 25670 0.69767 0.53834 1 + 28850 21207 19279 19287 28401 28401 0.21390489652821998 LSILQDQTQ 9 Unmodified _LSILQDQTQ_ 0 0 0 REV__PDPR|p.R136Q|1|0.27|ENSG00000090857|chr16:70128829-70128829|G/A|missense_variant REV__PDPR|p.R136Q|1|0.27|ENSG00000090857|chr16:70128829-70128829|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6841430664062 2 523.279846 1044.54514 0.089416 4.6789E-05 -0.49538 -0.00025922 -0.40596 -0.00021243 523.2795620371724 56.956 0.77014 53.78 53.404 54.174 -3.1761 46 21 3 0 0 0 0.60061 1 10540 10540 13.042 0 1 7039100 + 28851 24451 19280 19288 28402 28402 0.02464831372435583 LSILQDQTQ 9 Unmodified _LSILQDQTQ_ 0 0 0 REV__PDPR|p.R136Q|1|0.27|ENSG00000090857|chr16:70128829-70128829|G/A|missense_variant REV__PDPR|p.R136Q|1|0.27|ENSG00000090857|chr16:70128829-70128829|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.279846 1044.54514 0.16579 8.6756E-05 -0.50742 -0.00026552 -0.34163 -0.00017877 523.2795724006658 53.774 0.78688 53.774 53.495 54.282 0 0.025823 -0.00029989 NaN 13.042 42 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5377300 + 28852 24451 19280 19288 0.02464831372435583 LSILQDQTQ 9 Unmodified _LSILQDQTQ_ 0 0 0 REV__PDPR|p.R136Q|1|0.27|ENSG00000090857|chr16:70128829-70128829|G/A|missense_variant REV__PDPR|p.R136Q|1|0.27|ENSG00000090857|chr16:70128829-70128829|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.279846 1044.54514 -0.3371 -0.0001764 -0.045198 -2.3651E-05 -0.3823 -0.00020005 523.2797886914865 56.572 0.58574 53.677 53.371 53.957 -2.8944 -0.071293 0.00018385 NaN 13.042 38 16 3 NaN NaN NaN NaN 0 NaN NaN 0 7636900 + 28853 24451 19280 19288 0.02464831372435583 LSILQDQTQ 9 Unmodified _LSILQDQTQ_ 0 0 0 REV__PDPR|p.R136Q|1|0.27|ENSG00000090857|chr16:70128829-70128829|G/A|missense_variant REV__PDPR|p.R136Q|1|0.27|ENSG00000090857|chr16:70128829-70128829|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.279846 1044.54514 -0.52637 -0.00027544 0.084408 4.4169E-05 -0.44196 -0.00023127 523.2799023058419 56.953 0.51996 53.763 53.478 53.998 -3.1895 0.014606 0.00031949 NaN 13.042 39 14 3 NaN NaN NaN NaN 0 NaN NaN 0 6576600 + 28854 24451 19280 19288 0.02464831372435583 LSILQDQTQ 9 Unmodified _LSILQDQTQ_ 0 0 0 REV__PDPR|p.R136Q|1|0.27|ENSG00000090857|chr16:70128829-70128829|G/A|missense_variant REV__PDPR|p.R136Q|1|0.27|ENSG00000090857|chr16:70128829-70128829|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.279846 1044.54514 0.089416 4.6789E-05 -0.49538 -0.00025922 -0.40596 -0.00021243 523.2795620371724 56.956 0.77014 53.78 53.404 54.174 -3.1761 0.030864 -0.00028728 NaN 13.042 46 21 3 NaN NaN NaN NaN 0 NaN NaN 0 7039100 + 28855 24451 19280 19288 0.02464831372435583 LSINLISSEF 10 Unmodified _LSINLISSEF_ 0 0 0 nc|ENSG00000162669|A2PYH4-2|HFM1;ENST00000462405.5_1_1:91728075-91813019:-|nuORF;HFM1|p.K1137Hfs*4|1|0.1|ENSG00000162669|chr1:91277045-91277046|-/ATTTAAAGTG|frameshift_variant;HFM1|p.K1137Nfs*44|1|0.18|ENSG00000162669|chr1:91277043-91277043|T/-|frameshift_variant;HFM1|p.V1397Sfs*6|1|0.31|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant;HFM1|p.N1388Tfs*37|1|0.26|ENSG00000162669|chr1:91262316-91262316|T/-|frameshift_variant;ENSG00000162669|ENST00000370425|HFM1 nc|ENSG00000162669|A2PYH4-2|HFM1 nc|ENSG00000162669|A2PYH4-2|HFM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20721435546875 3 374.87289 1121.59684 -0.33596 -0.00012594 0.42937 0.00016096 0.093414 3.5018E-05 374.8729552673279 70.764 0.52973 67.297 67.096 67.626 -3.467 23 14 2 0 0 0 0.74491 1 13385 13385 6.6304 1.3335 1 1496700 28856 5352 19281 19289 28403 28403 0.04090575066334168 LSITATDGGK 10 Unmodified _LSITATDGGK_ 0 0 0 PCDHGB2|p.T421S|1|0.08|ENSG00000253910|chr5:141361397-141361397|C/G|missense_variant PCDHGB2|p.T421S|1|0.08|ENSG00000253910|chr5:141361397-141361397|C/G|missense_variant PCDHGB2|p.T421S|1|0.08|ENSG00000253910|chr5:141361397-141361397|C/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78790283203125 2 481.761289 961.508025 -0.10167 -4.8983E-05 0.034999 1.6861E-05 -0.066675 -3.2121E-05 481.7612682875428 22.121 0.30755 20.668 20.493 20.801 -1.4535 13 8 2 0 0 0 0.65108 1 3484 3484 16.149 1.5674 1 697180 28857 12759 19282 19290 28404 28404 0.02573159826670235 LSITSKQW 8 Unmodified _LSITSKQW_ 0 0 0 nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A nc|ENSG00000204469|P48634-2|PRRC2A nc|ENSG00000204469|P48634-2|PRRC2A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7688903808594 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 14.737 1 13.564 13.064 14.064 -1.173 0 0 0 0.21486 1 2015 2015 2.5775 0 1 28858 12560 19283 19291 28405 28405 0.040980714145121055 LSIWLNSF 8 Unmodified _LSIWLNSF_ 0 0 0 REV__ENST00000273158.8_1_3:39431013-39431945:+|nuORF REV__ENST00000273158.8_1_3:39431013-39431945:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2657165527344 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 63.163 1 59.906 59.406 60.406 -3.2567 0 0 0 0.21039 1 11853 11853 16.942 3.0362 1 + 28859 20281 19284 19292 28406 28406 0.027349729028628644 LSIYASCPDL 10 Unmodified _LSIYASCPDL_ 0 0 0 REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3 REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2693481445312 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 157.94 1 157.94 157.44 158.44 0 0 0 0 0.22576 1 31706 31706 14.838 2.3067 1 + 28860 16451 19285 19293 28407 28407 -0.020890292482363293 LSKEVFYPV 9 Unmodified _LSKEVFYPV_ 0 0 0 REV__ENST00000551872.1_1_12:57927977-57928175:-|nuORF REV__ENST00000551872.1_1_12:57927977-57928175:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.8638000488281 3 361.202459 1080.58555 -0.24882 -8.9873E-05 1.4479 0.00052297 1.199 0.00043309 361.5371339583308 65.306 0.27382 62.259 62.105 62.379 -3.047 12 7 2 0 0 0 0.49746 1 12622 12622 0.12781 0 1 1005600 + 28861 22938 19286 19294 28408 28408 0.04847797762840855 LSKFLKKV 8 Unmodified _LSKFLKKV_ 0 0 0 REV__ENSG00000198431|ENST00000525566|TXNRD1 REV__ENSG00000198431|ENST00000525566|TXNRD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7802734375 2 481.823495 961.632438 NaN NaN NaN NaN NaN NaN NaN 160.02 1 155.23 154.73 155.73 -4.7952 0 0 0 0.21486 1 31820 31820 4.756 0 1 + 28862 19414 19287 19295 28409 28409 0.15008702104660188 LSKFQQNTP 9 Unmodified _LSKFQQNTP_ 0 0 0 REV__ENST00000578529.5_1_18:214628-260326:-|nuORF REV__ENST00000578529.5_1_18:214628-260326:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.285888671875 2 531.782556 1061.55056 0.2898 0.00015411 -0.21436 -0.00011399 0.075442 4.0119E-05 531.7824355645753 41.574 0.8128 41.574 41.305 42.117 0 72 22 4 0 0 0 0.42844 1 7795 7795 24.021 5.8742 1 20259000 + 28863 14391 19288 19296 28410 28410 0.022245549549097632 LSKFQQNTP 9 Unmodified _LSKFQQNTP_ 0 0 0 REV__ENST00000578529.5_1_18:214628-260326:-|nuORF REV__ENST00000578529.5_1_18:214628-260326:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2863159179688 2 531.782556 1061.55056 0.0028971 1.5406E-06 0.0049839 2.6503E-06 0.0078809 4.1909E-06 531.7825147426023 44.336 0.80523 41.546 41.254 42.059 -2.79 70 22 4 0 0 0 0.46882 2 8354 8354;8383 21.537 1.1224 1 23882000 + 28864 14391 19288 19296 28411;28412 28411 0.022245549549097632 LSKFQQNTP 9 Unmodified _LSKFQQNTP_ 0 0 0 REV__ENST00000578529.5_1_18:214628-260326:-|nuORF REV__ENST00000578529.5_1_18:214628-260326:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2667846679688 2 531.782556 1061.55056 0.29233 0.00015545 -0.33407 -0.00017765 -0.041742 -2.2198E-05 531.7823940926621 44.325 0.76211 41.559 41.323 42.085 -2.7661 70 21 4 0 0 0 0.41266 2 8050 8050;8072 24.991 4.4241 1 19720000 + 28865 14391 19288 19296 28413;28414 28413 0.022245549549097632 LSKFQQNTP 9 Unmodified _LSKFQQNTP_ 0 0 0 REV__ENST00000578529.5_1_18:214628-260326:-|nuORF REV__ENST00000578529.5_1_18:214628-260326:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.286376953125 2 531.782556 1061.55056 -0.03123 -1.6607E-05 0.15116 8.0384E-05 0.11993 6.3777E-05 531.7825935363267 44.39 0.91129 41.643 41.291 42.202 -2.7475 76 25 5 0 0 0 0.55539 1 8014 8014 16.149 0.90062 1 16909000 + 28866 14391 19288 19296 28415 28415 0.022245549549097632 LSKGELKVG 9 Unmodified _LSKGELKVG_ 0 0 0 REV__KANSL1|p.K267Sfs*12|1|0.22|ENSG00000120071|chr17:46171344-46171344|T/-|frameshift_variant REV__KANSL1|p.K267Sfs*12|1|0.22|ENSG00000120071|chr17:46171344-46171344|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25177001953125 2 465.784567 929.554582 0.38644 0.00018 -0.48365 -0.00022528 -0.09721 -4.5279E-05 465.7843916537353 44.037 0.37111 44.037 43.917 44.288 0 19 10 3 0 0 0 0.85913 1 8291 8291 3.2813 0 1 2288500 + 28867 23694 19289 19297 28416 28416 0.08698644448611503 LSKGLLLKPL 10 Unmodified _LSKGLLLKPL_ 0 0 0 ENST00000549380.1_1_12:56551408-56551507:+|nuORF ENST00000549380.1_1_12:56551408-56551507:+|nuORF ENST00000549380.1_1_12:56551408-56551507:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2642211914062 2 541.37081 1080.72707 0.5323 0.00028817 2.9288 0.0015856 3.4611 0.0018737 541.873013901978 117.67 0.10323 113.26 113.17 113.28 -4.4088 4 2 2 0 0 0 0.91149 1 22645 22645 1.4819 1.0812 1 776780 28868 11164 19290 19298 28417 28417 0.18993215855971357 LSKKFPLS 8 Unmodified _LSKKFPLS_ 0 0 0 REV__ENSG00000215193|ENST00000399744|PEX26 REV__ENSG00000215193|ENST00000399744|PEX26 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2347717285156 2 460.284203 918.553853 0.49856 0.00022948 -0.19374 -8.9176E-05 0.30482 0.0001403 460.28399579584345 115.97 2.3937 111.61 110.26 112.66 -4.3585 141 67 3 0 0 0 0.72935 1 22074 22074 13.508 13.508 1 2561800 + 28869 19684 19291 19299 28418 28418 0.09131849799553038 LSKKIIFLNQ 10 Unmodified _LSKKIIFLNQ_ 0 0 0 REV__ENST00000265713.6_2_8:41789140-41789482:-|nuORF REV__ENST00000265713.6_2_8:41789140-41789482:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2965087890625 2 602.376623 1202.73869 0.43082 0.00025952 -2.0305 -0.0012231 -1.5997 -0.00096363 602.8747293177249 140.91 0.17838 135.92 135.78 135.96 -4.9877 6 4 2 0 0 0 0.91149 1 27133 27133 6.7232 2.7788 1 1938000 + 28870 20245 19292 19300 28419 28419 0.14543412879334028 LSKKLKYPRK 10 Unmodified _LSKKLKYPRK_ 0 0 0 REV__ENST00000521913.6_3_8:26514547-26514706:+|nuORF REV__ENST00000521913.6_3_8:26514547-26514706:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7490844726562 2 630.911165 1259.80778 NaN NaN NaN NaN NaN NaN NaN 137.06 1 137.06 136.56 137.56 0 0 0 0 0.22588 1 27171 27171 6.2058 2.9245 1 + 28871 22658 19293 19301 28420 28420 0.18826496898873302 LSKKLPKD 8 Unmodified _LSKKLPKD_ 0 0 0 REV__tr|U7SLR9|U7SLR9_FUSNUEndolyticmureintransglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mltGPE=3SV=1 REV__tr|U7SLR9|U7SLR9_FUSNUEndolyticmureintransglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mltGPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.250244140625 2 464.794935 927.575317 -0.14758 -6.8596E-05 0.13535 6.291E-05 -0.012233 -5.686E-06 464.7949390824369 88.329 0.50253 84.536 84.301 84.804 -3.7926 19 13 2 0 0 0 0.97966 1 17325 17325 16.942 5.302 1 1474300 + 28872 24949 19294 19302 28421 28421 0.10863234828275381 LSKKTRLCKK 10 Unmodified _LSKKTRLCKK_ 0 0 0 REV__ENSG00000136999|ENST00000259526|CCN3 REV__ENSG00000136999|ENST00000259526|CCN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3013305664062 2 602.88155 1203.74855 0.54361 0.00032773 1.8511 0.001116 2.3947 0.0014437 602.8807636076481 162.12 0.17007 156.94 156.82 156.99 -5.1878 5 4 2 0 0 0 0.89145 1 31456 31456 4.897 3.4151 1 1478100 + 28873 16370 19295 19303 28422 28422 0.15482277613023143 LSKLRKLAKF 10 Unmodified _LSKLRKLAKF_ 0 0 0 REV__ENSG00000172123|ENST00000304905|SLFN12 REV__ENSG00000172123|ENST00000304905|SLFN12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.296142578125 2 602.400433 1202.78631 NaN NaN NaN NaN NaN NaN NaN 162.74 1 157.55 157.05 158.05 -5.1878 0 0 0 0.22588 1 31616 31616 1.6526 0 1 + 28874 18273 19296 19304 28423 28423 0.19303111870158318 LSKMKGRVK 9 Unmodified _LSKMKGRVK_ 0 0 0 REV__ENST00000468619.5_1_11:70515690-70672680:-|nuORF REV__ENST00000468619.5_1_11:70515690-70672680:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6815795898438 2 523.828786 1045.64302 NaN NaN NaN NaN NaN NaN NaN 158.31 1 153.04 152.54 153.54 -5.2712 0 0 0 0.23508 1 30718 30718 3.9444 1.6417 1 + 28875 22000 19297 19305 28424 28424 0.12202361487425151 LSKNMMQIQ 9 Unmodified _LSKNMMQIQ_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7833862304688 2 546.780644 1091.54674 -0.38768 -0.00021198 1.041 0.00056921 0.65334 0.00035723 546.7812168364638 15.369 0.38276 14.255 14.061 14.443 -1.1142 22 10 4 0 0 0 0.64382 1 2360 2360 10.074 0.6908 1 5758500 28876 6829 19298 19306 28425 28425 0.004624258651801938 LSKNMMQIQ 9 Unmodified _LSKNMMQIQ_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.780644 1091.54674 0.21694 0.00011862 0.69359 0.00037924 0.91053 0.00049786 546.7810398807245 14.439 0.28468 14.439 14.314 14.598 0 0.14688 -0.00029956 NaN 10.074 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 7229000 28877 6829 19298 19306 0.004624258651801938 LSKNMMQIQ 9 Unmodified _LSKNMMQIQ_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.780644 1091.54674 -0.55171 -0.00030166 1.0245 0.00056016 0.47275 0.00025849 546.7812598388349 15.405 0.26905 14.184 14.032 14.301 -1.2219 -0.10896 6.2274E-05 NaN 10.074 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2727600 28878 6829 19298 19306 0.004624258651801938 LSKQAKITQY 10 Unmodified _LSKQAKITQY_ 0 0 0 REV__tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1 REV__tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2755737304688 2 590.340238 1178.66592 NaN NaN NaN NaN NaN NaN NaN 92.25 1 88.442 87.942 88.942 -3.8083 0 0 0 0.22588 1 17674 17674 6.7232 0.51738 1 + 28879 25119 19299 19307 28426 28426 0.08373659085896179 LSKQCNKLL 9 Unmodified _LSKQCNKLL_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6929931640625 2 523.804977 1045.5954 NaN NaN NaN NaN NaN NaN NaN 156.02 1 150.76 150.26 151.26 -5.2526 0 0 0 0.1924 1 30256 30256 24.674 1.5255 1 28880 4896 19300 19308 28427 28427 0.07442662496578123 LSKREKQSER 10 Unmodified _LSKREKQSER_ 0 0 0 REV__nc|ENSG00000130956|Q5JVS0-2|HABP4 REV__nc|ENSG00000130956|Q5JVS0-2|HABP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7518920898438 2 630.854575 1259.6946 1.1393 0.00071875 -3.2613 -0.0020574 -2.122 -0.0013387 631.3528761064634 162.37 0.24173 157.58 157.48 157.72 -4.7898 8 6 2 0 0 0 0.88533 1 32316 32316 8.7454 0.58988 1 11974000 + 28881 16042 19301 19309 28428 28428 0.07513776715040876 LSKSPKTMCS 10 Unmodified _LSKSPKTMCS_ 0 0 0 REV__ENSG00000136514|ENST00000259030|RTP4 REV__ENSG00000136514|ENST00000259030|RTP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2713623046875 2 541.272652 1080.53075 NaN NaN NaN NaN NaN NaN NaN 140.4 1 140.4 139.9 140.9 0 0 0 0 0.22588 1 27950 27950 11.495 2.1116 1 + 28882 16334 19302 19310 28429 28429 -0.00629280371731511 LSKSSLKGS 9 Unmodified _LSKSSLKGS_ 0 0 0 REV__nc|ENSG00000182095|O15417-2|TNRC18 REV__nc|ENSG00000182095|O15417-2|TNRC18 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76507568359375 2 453.766374 905.518196 NaN NaN NaN NaN NaN NaN NaN 75.073 1 71.709 71.209 72.209 -3.3643 0 0 0 0.19669 1 14648 14648 0.12781 0 1 + 28883 24199 19303 19311 28430 28430 0.0616576755190863 LSKSSQAIL 9 Unmodified _LSKSSQAIL_ 0 0 0 REV__ENSG00000145743|ENST00000542267|FBXL17 REV__ENSG00000145743|ENST00000542267|FBXL17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.1903381347656 3 316.190442 945.549496 NaN NaN NaN NaN NaN NaN NaN 114.29 1 109.81 109.31 110.31 -4.4726 0 0 0 0.23508 1 22524 22524 5.2969 0 1 + 28884 16852 19304 19312 28431 28431 0.07454340586002672 LSKTESISV 9 Unmodified _LSKTESISV_ 0 0 0 nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7689208984375 2 482.27149 962.528426 0.12345 5.9537E-05 -0.54546 -0.00026306 -0.42201 -0.00020352 482.27118809901555 84.294 0.69564 84.294 83.788 84.483 0 32 19 2 0 0 0 0.12694 1 16448 16448 51.415 7.6428 1 4441800 28885 2586 19305 19313 28432 28432 0.045663304864774545 LSKTSLAPI 9 Unmodified _LSKTSLAPI_ 0 0 0 nc|ENSG00000067191|Q02641-3|CACNB1;nc|ENSG00000067191|Q02641-2|CACNB1;CACNB2|p.T482Ifs*10|1|0.08|ENSG00000165995|chr10:18538322-18538322|C/-|frameshift_variant;nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000165995|Q08289-10|CACNB2;ENSG00000067191|ENST00000394303|CACNB1;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;ENSG00000165995|ENST00000324631|CACNB2 nc|ENSG00000067191|Q02641-3|CACNB1 nc|ENSG00000067191|Q02641-3|CACNB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2493896484375 2 465.286943 928.559333 0.23038 0.00010719 -0.28736 -0.0001337 -0.056976 -2.651E-05 465.2867545194233 119.59 1.27 115.07 114.27 115.54 -4.5221 89 35 3 0 0 0 0.31714 1 23434 23434 30.637 3.0077 1 5201300 28886 12229 19306 19314 28433 28433 0.09219528591347625 LSKVKPED 8 Unmodified _LSKVKPED_ 0 0 0 REV__ENSG00000139220|ENST00000549396|PPFIA2 REV__ENSG00000139220|ENST00000549396|PPFIA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23846435546875 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 62.389 1 62.389 61.889 62.889 0 0 0 0 0.21486 1 11980 11980 9.3474 1.4373 1 + 28887 16510 19307 19315 28434 28434 0.04662365177614447 LSKVYLIASKG 11 Unmodified _LSKVYLIASKG_ 0 0 0 REV__nc|ENSG00000138448|P06756-3|ITGAV REV__nc|ENSG00000138448|P06756-3|ITGAV MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2566528320312 2 589.860806 1177.70706 NaN NaN NaN NaN NaN NaN NaN 167.6 1 162.71 162.21 163.21 -4.8916 0 0 0 0.23018 1 32980 32980 8.1555 1.9497 1 + 28888 16464 19308 19316 28435 28435 0.12531420125355908 LSLAFRLGLY 10 Unmodified _LSLAFRLGLY_ 0 0 0 ENST00000483600.1_1_2:100726370-100726484:-|nuORF ENST00000483600.1_1_2:100726370-100726484:-|nuORF ENST00000483600.1_1_2:100726370-100726484:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3135986328125 2 576.842416 1151.67028 0.10586 6.1062E-05 -2.8978 -0.0016716 -2.7919 -0.0016105 576.8406730402264 92.349 0.10566 88.541 88.476 88.582 -3.8083 4 2 2 0 0 0 0.91149 1 17690 17690 1.6526 0 1 613780 28889 10415 19309 19317 28436 28436 0.10051168299469282 LSLEASTGY 9 Unmodified _LSLEASTGY_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.15997314453125 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 96.974 1 92.876 92.376 93.376 -4.0978 0 0 0 0.23508 1 19023 19023 4.897 2.1618 1 28890 7532 19310 19318 28437 28437 -0.017222179560008044 LSLEASTGY 9 Unmodified _LSLEASTGY_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.1596374511719 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 97.287 1 93.189 92.689 93.689 -4.0978 0 0 0 0.23508 1 19087 19087 4.897 0.95262 1 28891 7532 19310 19318 28438 28438 -0.017222179560008044 LSLEDEIDN 9 Unmodified _LSLEDEIDN_ 0 0 0 ZC3H12B|p.S479Afs*71|1|0.28|ENSG00000102053|chrX:65502124-65502124|C/-|frameshift_variant;ZC3H12B|p.V574Cfs*14|1|0.11|ENSG00000102053|chrX:65502413-65502413|G/-|frameshift_variant;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B ZC3H12B|p.S479Afs*71|1|0.28|ENSG00000102053|chrX:65502124-65502124|C/-|frameshift_variant ZC3H12B|p.S479Afs*71|1|0.28|ENSG00000102053|chrX:65502124-65502124|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6961059570312 2 524.245669 1046.47678 0.17302 9.0707E-05 -0.51527 -0.00027013 -0.34225 -0.00017942 524.7464657885389 122.37 0.43927 122.37 122.23 122.67 0 17 12 2 0 0 0 0.53499 1 24155 24155 0.87518 0.74736 1 3657200 28892 2107 19311 19319 28439 28439 -0.04459457998086691 LSLEFHNS 8 Unmodified _LSLEFHNS_ 0 0 0 REV__nc|ENSG00000188157|O00468-2|AGRN REV__nc|ENSG00000188157|O00468-2|AGRN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1661376953125 3 316.159142 945.455596 NaN NaN NaN NaN NaN NaN NaN 20.002 1 18.677 18.177 19.177 -1.3251 0 0 0 0.21486 1 3083 3083 1.4819 0.28856 1 + 28893 24216 19312 19320 28440 28440 -0.019313785162808017 LSLFEYFY 8 Unmodified _LSLFEYFY_ 0 0 0 REV__WIF1|p.R107H|1|0.19|ENSG00000156076|chr12:65077823-65077823|C/T|missense_variant REV__WIF1|p.R107H|1|0.19|ENSG00000156076|chr12:65077823-65077823|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2654418945312 2 541.265676 1080.5168 NaN NaN NaN NaN NaN NaN NaN 102.45 1 98.133 97.633 98.633 -4.3208 0 0 0 0.22674 1 19617 19617 14.838 14.211 1 + 28894 17242 19313 19321 28441 28441 -0.020238665368424336 LSLFPHWASST 11 Unmodified _LSLFPHWASST_ 0 0 0 REV__FSHR|p.T555Wfs*89|1|0.07|ENSG00000170820|chr2:48963159-48963160|-/TCCAA|frameshift_variant REV__FSHR|p.T555Wfs*89|1|0.07|ENSG00000170820|chr2:48963159-48963160|-/TCCAA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7744750976562 2 623.316763 1244.61897 0.42923 0.00026755 0.69041 0.00043034 1.1196 0.00069789 623.8181521743438 166.08 0.10347 161.1 161.05 161.16 -4.9811 4 2 2 0 0 0 0.87514 1 32532 32532 0.00056442 0 1 15187000 + 28895 23551 19314 19322 28442 28442 0.006447995347571123 LSLFQRIDC 9 Unmodified _LSLFQRIDC_ 0 0 0 REV__ENSG00000160957|ENST00000617875|RECQL4 REV__ENSG00000160957|ENST00000617875|RECQL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7911987304688 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 156.24 1 156.24 155.74 156.74 0 0 0 0 0.23508 1 31341 31341 7.2892 0 1 + 28896 17443 19315 19323 28443 28443 0.015977855998926316 LSLGNKLIH 9 Unmodified _LSLGNKLIH_ 0 0 0 REV__ENSG00000139131|ENST00000324868|YARS2 REV__ENSG00000139131|ENST00000324868|YARS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.00518798828125 3 332.206315 993.597115 0.22343 7.4226E-05 0.20173 6.7017E-05 0.42517 0.00014124 332.2063524295282 27.61 0.55812 25.855 25.617 26.175 -1.7552 23 15 2 0 0 0 0.8825 1 4608 4608 0.23584 0 1 1237800 + 28897 16501 19316 19324 28444 28444 0.10006039576853709 LSLIPIIDP 9 Unmodified _LSLIPIIDP_ 0 0 0 REV__tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1 REV__tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.8326416015625 2 490.804968 979.595384 NaN NaN NaN NaN NaN NaN NaN 134.22 1 134.22 133.72 134.72 0 0 0 0 0.23508 1 26566 26566 3.9444 1.0552 1 + 28898 25202 19317 19325 28445 28445 0.1047698576824132 LSLIPLPEP 9 Unmodified _LSLIPLPEP_ 0 0 0 REV__nc|ENSG00000063176|Q9NRA0-3|SPHK2 REV__nc|ENSG00000063176|Q9NRA0-3|SPHK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.8102111816406 2 489.797143 977.579734 NaN NaN NaN NaN NaN NaN NaN 162.35 1 157.21 156.71 157.71 -5.1438 0 0 0 0.22251 1 31541 31541 16.942 0 1 + 28899 23942 19318 19326 28446 28446 0.0900469925119296 LSLIVKYLF 9 Unmodified _LSLIVKYLF_ 0 0 0 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.771240234375 2 548.344261 1094.67397 0.20681 0.0001134 2.9866 0.0016377 3.1935 0.0017511 548.3439545282414 137.7 0.17598 133.05 132.94 133.12 -4.6413 6 4 2 0 0 0 0.87511 1 27160 27160 7.2892 0 1 1565600 + 28900 15037 19319 19327 28447 28447 0.1304183807330901 LSLKGMKQG 9 Unmodified _LSLKGMKQG_ 0 0 0 REV__ENST00000228945.8_1_12:15095121-15095250:-|nuORF REV__ENST00000228945.8_1_12:15095121-15095250:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2396545410156 2 481.278595 960.542637 NaN NaN NaN NaN NaN NaN NaN 131.78 1 126.98 126.48 127.48 -4.799 0 0 0 0.19674 1 25369 25369 0.40827 0.34428 1 + 28901 20058 19320 19328 28448 28448 0.06078704433787152 LSLKSQISLY 10 Unmodified _LSLKSQISLY_ 0 0 0 ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant ZNF33A|p.E689Rfs*83|1|0.35|ENSG00000189180|chr10:38056188-38056188|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3341674804688 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 65.462 1 62.179 61.679 62.679 -3.2832 0 0 0 0.22569 1 12306 12306 15.847 0 1 28902 26614 19321 19329 28449 28449 0.09047140854386271 LSLLEEPD 8 Unmodified _LSLLEEPD_ 0 0 0 PIGR|p.G420D|1|0.15|ENSG00000162896|chr1:206935605-206935605|C/T|missense_variant PIGR|p.G420D|1|0.15|ENSG00000162896|chr1:206935605-206935605|C/T|missense_variant PIGR|p.G420D|1|0.15|ENSG00000162896|chr1:206935605-206935605|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23895263671875 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 91.084 1 91.084 90.584 91.584 0 0 0 0 0.21486 1 17797 17797 12.532 2.4576 1 28903 12788 19322 19330 28450 28450 -0.0009733381324394941 LSLLIKAAPIL 11 Unmodified _LSLLIKAAPIL_ 0 0 0 nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant;ENST00000489023.5_1_2:210693994-210832362:+|nuORF;UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant;UNC80|p.N2032*|1|0.42|ENSG00000144406|chr2:209936855-209936856|-/T|frameshift_variant nc|ENSG00000144406|Q8N2C7-4|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3255615234375 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 159.45 1 159.45 158.95 159.95 0 0 0 0 0.23698 1 32015 32015 1.3295 0 1 28904 4551 19323 19331 28451 28451 0.19957771544500247 LSLLLVKNYKS 11 Unmodified _LSLLLVKNYKS_ 0 0 0 ENSG00000273238|ENST00000610212|TMEM271 ENSG00000273238|ENST00000610212|TMEM271 ENSG00000273238|ENST00000610212|TMEM271 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 639.4386596679688 2 639.395013 1276.77547 NaN NaN NaN NaN NaN NaN NaN 164.28 1 159.21 158.71 159.71 -5.0648 0 0 0 0.23519 1 32023 32023 4.1895 0.24511 1 28905 8010 19324 19332 28452 28452 0.14815664705224663 LSLLQAGPSA 10 Unmodified _LSLLQAGPSA_ 0 0 0 REV__ENSG00000158683|ENST00000289672|PKD1L1 REV__ENSG00000158683|ENST00000289672|PKD1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73321533203125 2 478.7742 955.533846 -0.39867 -0.00019087 0.28775 0.00013777 -0.11092 -5.3107E-05 478.7743240282934 68.399 0.46713 68.399 68.181 68.648 0 17 12 2 0 0 0 0.84217 1 13221 13221 15.248 1.3424 1 1012100 + 28906 17342 19325 19333 28453 28453 0.054300540689382615 LSLLRLEL 8 Unmodified _LSLLRLEL_ 0 0 0 REV__CIC|p.P1529Lfs*91|1|0.24|ENSG00000079432|chr19:42294946-42294946|C/-|frameshift_variant REV__CIC|p.P1529Lfs*91|1|0.24|ENSG00000079432|chr19:42294946-42294946|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74163818359375 2 478.810585 955.606617 0.16011 7.6664E-05 -0.43712 -0.0002093 -0.27701 -0.00013264 478.8104150606877 60.858 0.34782 57.634 57.386 57.734 -3.2237 12 9 2 0 0 0 0.99312 1 11372 11372 10.074 0 1 741440 + 28907 13436 19326 19334 28454 28454 0.12703807862362737 LSLLVLKER 9 Unmodified _LSLLVLKER_ 0 0 0 GPR173|p.Y180Sfs*38|1|0.3|ENSG00000184194|chrX:53077160-53077160|A/-|frameshift_variant;ENSG00000184194|ENST00000332582|GPR173 GPR173|p.Y180Sfs*38|1|0.3|ENSG00000184194|chrX:53077160-53077160|A/-|frameshift_variant GPR173|p.Y180Sfs*38|1|0.3|ENSG00000184194|chrX:53077160-53077160|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.07293701171875 3 357.569253 1069.68593 0.32864 0.00011751 -0.54596 -0.00019522 -0.21732 -7.7706E-05 357.56906440945244 30.483 0.31508 28.59 28.381 28.697 -1.8928 13 8 2 0 0 0 0.87708 1 5245 5245 7.1017 0 1 540620 28908 6893 19327 19335 28455 28455 0.15387454816504942 LSLMFRTRQ 9 Unmodified _LSLMFRTRQ_ 0 0 0 CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2215Wfs*26|2|0.42|ENSG00000143126|chr1:109269115-109269115|C/-|frameshift_variant CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3292236328125 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 116.58 1 116.58 116.08 117.08 0 0 0 0 0.23508 1 22955 22955 9.3831 0.63772 1 28909 480 19328 19336 28456 28456 0.058808696194319054 LSLNAIGQSY 10 Unmodified _LSLNAIGQSY_ 0 0 0 REV__ENSG00000178038|ENST00000318962|ALS2CL REV__ENSG00000178038|ENST00000318962|ALS2CL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2833251953125 2 533.282389 1064.55022 0.35087 0.00018711 0.14892 7.9418E-05 0.49979 0.00026653 533.2824142578534 49.318 0.59846 49.318 49.055 49.653 0 34 16 3 0 0 0 0.59928 1 9383 9383 19.257 4.4187 1 3885000 + 28910 18585 19329 19337 28457 28457 0.020531352350417365 LSLNNPIRR 9 Unmodified _LSLNNPIRR_ 0 0 0 CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;CACNA1D|p.M297Cfs*13|1|0.37|ENSG00000157388|chr3:53665778-53665778|A/-|frameshift_variant;CACNA1D|p.F303Lfs*7|2|0.28|ENSG00000157388|chr3:53665796-53665796|T/-|frameshift_variant;CACNA1D|p.A841Dfs*10|1|0.73|ENSG00000157388|chr3:53732862-53732865|GCCG/-|frameshift_variant;CACNA1D|p.F1318Sfs*6|1|0.39|ENSG00000157388|chr3:53770457-53770457|T/-|frameshift_variant;nc|ENSG00000157388|Q01668-4|CACNA1D CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2583618164062 2 541.825089 1081.63563 0.31856 0.00017261 -2.094 -0.0011346 -1.7754 -0.00096196 541.8252309744134 138.81 0.24939 138.81 138.7 138.95 0 9 6 2 0 0 0 0.7906 1 27562 27562 5.2969 0 1 5263300 28911 360 19330 19338 28458 28458 0.0980734521137947 LSLPELKPQ 9 Unmodified _LSLPELKPQ_ 0 0 0 ENST00000342272.3_1_20:42805662-42805989:-|nuORF ENST00000342272.3_1_20:42805662-42805989:-|nuORF ENST00000342272.3_1_20:42805662-42805989:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 513.01318359375 2 512.8055 1023.59645 NaN NaN NaN NaN NaN NaN NaN 163.32 1 158.25 157.75 158.75 -5.0648 0 0 0 0.19711 1 31775 31775 0.40827 0 1 28912 8862 19331 19339 28459 28459 0.08559200137131029 LSLPGPGLGP 10 Unmodified _LSLPGPGLGP_ 0 0 0 REV__ENSG00000100368|ENST00000403662|CSF2RB REV__ENSG00000100368|ENST00000403662|CSF2RB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7500915527344 2 454.26601 906.517468 -0.075194 -3.4158E-05 -1.4065 -0.00063894 -1.4817 -0.0006731 454.2661573250003 99.388 0.27776 95.256 95.094 95.372 -4.1326 9 7 2 0 0 0 0.89521 1 19502 19502 6.7232 0 1 671680 + 28913 14702 19332 19340 28460 28460 0.06046972902845482 LSLPTVFLVY 10 Unmodified _LSLPTVFLVY_ 0 0 0 ENST00000499291.6_1_12:11709371-11709509:+|nuORF ENST00000499291.6_1_12:11709371-11709509:+|nuORF ENST00000499291.6_1_12:11709371-11709509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3384399414062 2 576.339175 1150.6638 NaN NaN NaN NaN NaN NaN NaN 132.8 1 128 127.5 128.5 -4.799 0 0 0 0.22588 1 25557 25557 6.7232 0 1 28914 10613 19333 19341 28461 28461 0.09449230348081983 LSLQTSDFDG 10 Unmodified _LSLQTSDFDG_ 0 0 0 TACC2|p.A2091T|1|0.24|ENSG00000138162|chr10:122210696-122210696|G/A|missense_variant TACC2|p.A2091T|1|0.24|ENSG00000138162|chr10:122210696-122210696|G/A|missense_variant TACC2|p.A2091T|1|0.24|ENSG00000138162|chr10:122210696-122210696|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2745971679688 2 541.753661 1081.49277 0.28599 0.00015494 0.16175 8.763E-05 0.44775 0.00024257 541.7535786941696 62.515 0.38918 59.553 59.252 59.641 -2.9614 16 10 2 0 0 0 0.81109 1 12056 12056 24.021 5.8742 1 947410 28915 25814 19334 19342 28462 28462 -0.044717517611843505 LSLQVMDIY 9 Unmodified _LSLQVMDIY_ 0 0 0 ENST00000462616.1_1_9:139310627-139310981:+|nuORF ENST00000462616.1_1_9:139310627-139310981:+|nuORF ENST00000462616.1_1_9:139310627-139310981:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2833862304688 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 54.163 1 51.026 50.526 51.526 -3.1377 0 0 0 0.21848 1 10016 10016 18.135 7.3111 1 28916 10088 19335 19343 28463 28463 0.015478476485213832 LSLRFPGLY 9 Unmodified _LSLRFPGLY_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2759399414062 2 533.30821 1064.60187 0.45157 0.00024083 -2.2761 -0.0012139 -1.8246 -0.00097305 533.3088254140532 139.62 0.14201 134.67 134.57 134.71 -4.952 5 3 2 0 0 0 0.68435 1 26852 26852 7.2892 0.56607 1 1258800 28917 1631 19336 19344 28464 28464 0.07214923719629951 LSLRPAETA 9 Unmodified _LSLRPAETA_ 0 0 0 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7237854003906 2 479.271824 956.529095 -0.041735 -2.0002E-05 0.50198 0.00024058 0.46024 0.00022058 479.27202656107966 53.293 0.63747 53.293 52.966 53.603 0 35 17 3 0 0 0 0.60663 1 10157 10157 32.786 1.5173 1 10403000 28918 1955 19337 19345 28465 28465 0.049091699261907706 LSLRPAETA 9 Unmodified _LSLRPAETA_ 0 0 0 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7238464355469 2 479.271824 956.529095 0.0036854 1.7663E-06 0.70793 0.00033929 0.71162 0.00034106 479.2721378480089 56.346 0.57094 53.17 52.903 53.474 -3.1761 27 15 2 0 0 0 0.74858 1 10515 10515 22.736 17.98 1 13254000 28919 1955 19337 19345 28466 28466 0.049091699261907706 LSLRRRTSY 9 Unmodified _LSLRRRTSY_ 0 0 0 ENSG00000205639|ENST00000338315|MFSD2B;ENST00000469562.1_1_2:24246405-24248323:+|nuORF ENSG00000205639|ENST00000338315|MFSD2B ENSG00000205639|ENST00000338315|MFSD2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3363037109375 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 30.867 1 28.841 28.341 29.341 -2.0264 0 0 0 0.23508 1 5308 5308 4.3292 0.38484 1 28920 7653 19338 19346 28467 28467 0.0877873024010114 LSLRRRTSY 9 Unmodified _LSLRRRTSY_ 0 0 0 ENSG00000205639|ENST00000338315|MFSD2B;ENST00000469562.1_1_2:24246405-24248323:+|nuORF ENSG00000205639|ENST00000338315|MFSD2B ENSG00000205639|ENST00000338315|MFSD2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3345947265625 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 49.752 1 46.745 46.245 47.245 -3.0068 0 0 0 0.23508 1 9128 9128 7.9102 0.62092 1 28921 7653 19338 19346 28468 28468 0.0877873024010114 LSLRRTES 8 Unmodified _LSLRRTES_ 0 0 0 REV__ENSG00000168394|ENST00000354258|TAP1 REV__ENSG00000168394|ENST00000354258|TAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2437438964844 2 481.274898 960.535243 NaN NaN NaN NaN NaN NaN NaN 80.982 1 80.982 80.482 81.482 0 0 0 0 0.20135 1 15767 15767 24.021 2.2739 1 + 28922 18020 19339 19347 28469 28469 0.05339688157710043 LSLRYLLYY 9 Unmodified _LSLRYLLYY_ 0 0 0 ENST00000490716.5_1_13:37596969-37597095:-|nuORF ENST00000490716.5_1_13:37596969-37597095:-|nuORF ENST00000490716.5_1_13:37596969-37597095:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.30029296875 2 602.342249 1202.66995 NaN NaN NaN NaN NaN NaN NaN 121.06 1 116.37 115.87 116.87 -4.6873 0 0 0 0.23508 1 23240 23240 8.5933 0.43775 1 28923 10515 19340 19348 28470 28470 0.07671748579628002 LSLTPDLFG 9 Unmodified _LSLTPDLFG_ 0 0 0 REV__ENSG00000146409|ENST00000275227|SLC18B1 REV__ENSG00000146409|ENST00000275227|SLC18B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2341613769531 2 481.7633 961.512048 -0.31079 -0.00014973 -1.8814 -0.00090641 -2.1922 -0.0010561 481.7611708993002 64.075 0.5918 64.075 63.749 64.341 0 25 16 2 0 0 0 0.65155 1 12322 12322 15.847 4.2069 1 1488700 + 28924 16886 19341 19349 28471 28471 0.029752493203773156 LSLTVDNLSLK 11 Unmodified _LSLTVDNLSLK_ 0 0 0 REV__ENSG00000181544|ENST00000650831|FANCB REV__ENSG00000181544|ENST00000650831|FANCB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2964477539062 2 601.853178 1201.6918 1.172 0.00070536 -0.93571 -0.00056316 0.23627 0.0001422 601.8525334364215 117.39 0.80778 112.9 112.49 113.3 -4.486 74 22 4 0 0 0 0.42751 1 23073 23073 28.234 0.60482 1 34502000 + 28925 18734 19342 19350 28472 28472 0.09902508537516042 LSLVLIHHF 9 Unmodified _LSLVLIHHF_ 0 0 0 ENST00000393079.3_1_3:136573786-136573867:+|nuORF ENST00000393079.3_1_3:136573786-136573867:+|nuORF ENST00000393079.3_1_3:136573786-136573867:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21710205078125 3 360.218443 1077.6335 NaN NaN NaN NaN NaN NaN NaN 148.05 1 143.34 142.84 143.84 -4.7095 0 0 0 0.23508 1 29394 29394 2.7352 0 1 28926 9385 19343 19351 28473 28473 0.0977891647355591 LSLVYFYLII 10 Unmodified _LSLVYFYLII_ 0 0 0 REV__OR2G6|p.N269Tfs*12|1|0.27|ENSG00000188558|chr1:248522448-248522448|A/-|frameshift_variant REV__OR2G6|p.N269Tfs*12|1|0.27|ENSG00000188558|chr1:248522448-248522448|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7532958984375 2 622.370475 1242.7264 0.40049 0.00024925 -3.6908 -0.002297 -3.2903 -0.0020478 622.3671402215618 139.59 0.17313 139.59 139.5 139.68 0 5 4 2 0 0 0 0.89521 1 27751 27751 10.824 3.215 1 2483400 + 28927 19152 19344 19352 28474 28474 0.11474376416299492 LSLWKWKY 8 Unmodified _LSLWKWKY_ 0 0 0 CCDC102B|p.N420Tfs*5|3|0.26|ENSG00000150636|chr18:68897418-68897418|A/-|frameshift_variant;ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B CCDC102B|p.N420Tfs*5|3|0.26|ENSG00000150636|chr18:68897418-68897418|A/-|frameshift_variant CCDC102B|p.N420Tfs*5|3|0.26|ENSG00000150636|chr18:68897418-68897418|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2145690917969 3 375.21481 1122.6226 NaN NaN NaN NaN NaN NaN NaN 40.514 1 37.879 37.379 38.379 -2.6348 0 0 0 0.21486 1 7550 7550 3.5965 0.8613 1 28928 408 19345 19353 28475 28475 0.06619514099270418 LSLWLVLGLFA 11 Unmodified _LSLWLVLGLFA_ 0 0 0 REV__ENSG00000156222|ENST00000394573|SLC28A1 REV__ENSG00000156222|ENST00000394573|SLC28A1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 616.29443359375 2 616.376092 1230.73763 NaN NaN NaN NaN NaN NaN NaN 163.23 1 158.44 157.94 158.94 -4.7898 0 0 0 0.23379 1 32528 32528 5.2969 0.96765 1 + 28929 17252 19346 19354 28476 28476 0.13149198510404858 LSLWRGCLF 9 Unmodified _LSLWRGCLF_ 0 0 0 REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF;REV__nc|ENSG00000167210|Q8IVV2-3|LOXHD1 REV__nc|ENSG00000167210|Q8IVV2-3|LOXHD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7880249023438 2 547.794412 1093.57427 NaN NaN NaN NaN NaN NaN NaN 160.31 1 155.06 154.56 155.56 -5.2526 0 0 0 0.23508 1 31112 31112 6.7232 0 1 + 28930 20658;17911 19347 19355 28477 28477 0.03122697187700396 LSLYFQFFCCY 11 Unmodified _LSLYFQFFCCY_ 0 0 0 ENST00000428388.6_1_6:32135933-32136035:+|nuORF ENST00000428388.6_1_6:32135933-32136035:+|nuORF ENST00000428388.6_1_6:32135933-32136035:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7379455566406 3 478.547132 1432.61957 NaN NaN NaN NaN NaN NaN NaN 82.083 1 78.526 78.026 79.026 -3.557 0 0 0 0.23689 1 16041 16041 2.8433 0 1 28931 9753 19348 19356 28478 28478 -0.07943865132028805 LSMFAATADP 10 Unmodified _LSMFAATADP_ 0 0 0 ENSG00000103544|ENST00000417362|VPS35L;ENST00000544670.5_1_16:19576218-19584460:+|nuORF ENSG00000103544|ENST00000417362|VPS35L ENSG00000103544|ENST00000417362|VPS35L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 512.2904663085938 2 512.244418 1022.47428 -0.31156 -0.0001596 1.4536 0.00074461 1.1421 0.00058502 512.2450045770182 157.11 0.87479 151.83 151.45 152.32 -5.2854 38 24 2 0 0 0 0.90091 1 30566 30566 1.3295 0 1 1795300 28932 2196 19349 19357 28479 28479 -0.036055849367585324 LSMFKNFA 8 Unmodified _LSMFKNFA_ 0 0 0 ENSG00000274588|ENST00000611977|DGKK ENSG00000274588|ENST00000611977|DGKK ENSG00000274588|ENST00000611977|DGKK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 479.2462158203125 2 479.246763 956.478974 NaN NaN NaN NaN NaN NaN NaN 142.49 1 137.83 137.33 138.33 -4.656 0 0 0 0.2074 1 28166 28166 19.439 0 1 28933 8020 19350 19358 28480 28480 -0.0010065600331472524 LSMKVDPAT 9 Unmodified _LSMKVDPAT_ 0 0 0 REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2545471191406 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 71.674 1 71.674 71.174 72.174 0 0 0 0 0.21065 1 13888 13888 20.454 2.3186 1 + 28934 12988 19351 19359 28481 28481 0.01319005442917387 LSMLFKHLY 9 Unmodified _LSMLFKHLY_ 0 0 0 REV__VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant REV__VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3182983398438 2 576.31772 1150.62089 NaN NaN NaN NaN NaN NaN NaN 79.058 1 79.058 78.558 79.558 0 0 0 0 0.19632 1 15384 15384 0.40827 0 1 + 28935 15943 19352 19360 28482 28482 0.05160137019015565 LSNALLETT 9 Unmodified _LSNALLETT_ 0 0 0 TANGO2|p.P163T|1|0.14|ENSG00000183597|chr22:20061565-20061565|C/A|missense_variant TANGO2|p.P163T|1|0.14|ENSG00000183597|chr22:20061565-20061565|C/A|missense_variant TANGO2|p.P163T|1|0.14|ENSG00000183597|chr22:20061565-20061565|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2534484863281 2 481.263665 960.512776 0.24434 0.00011759 -0.97078 -0.0004672 -0.72644 -0.00034961 481.2628837421037 66.389 0.45496 63.062 62.747 63.202 -3.3268 24 12 3 0 0 0 0.41266 1 12455 12455 24.991 3.454 1 769180 28936 25818 19353 19361 28483 28483 0.030940439694290944 LSNAQANVV 9 Unmodified _LSNAQANVV_ 0 0 0 AMOT|p.K585N|1|0.18|ENSG00000126016|chrX:112804968-112804968|C/A|missense_variant AMOT|p.K585N|1|0.18|ENSG00000126016|chrX:112804968-112804968|C/A|missense_variant AMOT|p.K585N|1|0.18|ENSG00000126016|chrX:112804968-112804968|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22637939453125 2 458.248349 914.482145 0.15594 7.1457E-05 0.13627 6.2445E-05 0.2922 0.0001339 458.24838210209754 64.695 0.91254 61.237 60.733 61.646 -3.4581 61 25 3 0 0 0 0.38188 1 12049 12049 26.884 3.7352 1 13853000 28937 147 19354 19362 28484 28484 0.02148310375048368 LSNARIRPNY 10 Unmodified _LSNARIRPNY_ 0 0 0 REV__ENSG00000089876|ENST00000284690|DHX32 REV__ENSG00000089876|ENST00000284690|DHX32 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3008422851562 2 602.333279 1202.652 NaN NaN NaN NaN NaN NaN NaN 132.01 1 127.22 126.72 127.72 -4.799 0 0 0 0.22588 1 25414 25414 10.074 1.9184 1 + 28938 14538 19355 19363 28485 28485 0.05878426377489632 LSNCPELAP 9 Unmodified _LSNCPELAP_ 0 0 0 ENST00000371222.3_1_1:59249320-59249608:-|nuORF ENST00000371222.3_1_1:59249320-59249608:-|nuORF ENST00000371222.3_1_1:59249320-59249608:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.2893371582031 3 315.156632 942.448068 NaN NaN NaN NaN NaN NaN NaN 4.4669 1 3.8406 3.3406 4.3406 -0.62626 0 0 0 0.23508 1 91 91 1.1933 0 1 28939 9155 19356 19364 28486 28486 -0.0254585410823438 LSNCPELAP 9 Unmodified _LSNCPELAP_ 0 0 0 ENST00000371222.3_1_1:59249320-59249608:-|nuORF ENST00000371222.3_1_1:59249320-59249608:-|nuORF ENST00000371222.3_1_1:59249320-59249608:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.15673828125 3 315.156632 942.448068 NaN NaN NaN NaN NaN NaN NaN 97.466 1 93.546 93.046 94.046 -3.9194 0 0 0 0.23508 1 18703 18703 2.4985 0.21571 1 28940 9155 19356 19364 28487 28487 -0.0254585410823438 LSNEHTDSD 9 Unmodified _LSNEHTDSD_ 0 0 0 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.49102783203125 3 339.808837 1016.40468 -0.49058 -0.0001667 -1.1379 -0.00038667 -1.6285 -0.00055337 339.8083886444691 53.235 0.90719 50.352 49.965 50.872 -2.8837 42 25 2 0 0 0 0.55219 1 10155 10155 2.4985 1.5362 1 1345700 + 28941 15037 19357 19365 28488 28488 -0.10286372351811224 LSNEHTDSD 9 Unmodified _LSNEHTDSD_ 0 0 0 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 339.808837 1016.40468 -0.49058 -0.0001667 -1.1379 -0.00038667 -1.6285 -0.00055337 339.8083886444691 53.235 0.90719 50.352 49.965 50.872 -2.8837 -0.029055 0.00011826 NaN 2.4985 42 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1345700 + 28942 15037 19357 19365 -0.10286372351811224 LSNEHTDSD 9 Unmodified _LSNEHTDSD_ 0 0 0 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 339.808837 1016.40468 0.056513 1.9204E-05 -1.7094 -0.00058087 -1.6529 -0.00056167 339.80818655048176 53.533 0.77454 50.446 50.039 50.813 -3.0876 0.064759 -0.00046435 NaN 2.4985 28 21 2 NaN NaN NaN NaN 0 NaN NaN 0 870250 + 28943 15037 19357 19365 -0.10286372351811224 LSNEHTDSD 9 Unmodified _LSNEHTDSD_ 0 0 0 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 339.808837 1016.40468 -0.73116 -0.00024846 -0.74049 -0.00025163 -1.4717 -0.00050008 339.8084983931896 53.44 0.71881 50.345 50.036 50.755 -3.0954 -0.035704 0.00052339 NaN 2.4985 26 20 2 NaN NaN NaN NaN 0 NaN NaN 0 680980 + 28944 15037 19357 19365 -0.10286372351811224 LSNEKKAKKV 10 Unmodified _LSNEKKAKKV_ 0 0 0 DCX|p.K216Rfs*16|1|0.69|ENSG00000077279|chrX:111401291-111401291|T/-|frameshift_variant;DCX|p.T233Hfs*5|1|0.57|ENSG00000077279|chrX:111401241-111401241|T/-|frameshift_variant;DCX|p.K308Nfs*10|1|0.59|ENSG00000077279|chrX:111401014-111401014|T/-|frameshift_variant;DCX|p.K404Sfs*82|1|0.73|ENSG00000077279|chrX:111312702-111312702|G/-|frameshift_variant;nc|ENSG00000077279|O43602-2|DCX;nc|ENSG00000077279|O43602|DCX;ENSG00000077279|ENST00000636035|DCX DCX|p.K216Rfs*16|1|0.69|ENSG00000077279|chrX:111401291-111401291|T/-|frameshift_variant DCX|p.K216Rfs*16|1|0.69|ENSG00000077279|chrX:111401291-111401291|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 572.8548583984375 2 572.856055 1143.69756 NaN NaN NaN NaN NaN NaN NaN 169.84 1 164.91 164.41 165.41 -4.9295 0 0 0 2.8426 1 33555 33555 0.20733 0 1 28945 795 19358 19366 28489 28489 0.1314565183981813 LSNINLQGKAF 11 Unmodified _LSNINLQGKAF_ 0 0 0 nc|ENSG00000157181|Q5SWX8-4|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4;nc|ENSG00000157181|Q5SWX8-3|ODR4 nc|ENSG00000157181|Q5SWX8-4|ODR4 nc|ENSG00000157181|Q5SWX8-4|ODR4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3014526367188 2 602.837862 1203.66117 0.41614 0.00025087 3.7598 0.0022666 4.176 0.0025174 603.3398882176318 138.62 0.24449 133.66 133.5 133.74 -4.952 9 6 2 0 0 0 0.92792 1 26644 26644 2.7352 0 1 3645400 28946 12396 19359 19367 28490 28490 0.06748774943139324 LSNIRWWL 8 Unmodified _LSNIRWWL_ 0 0 0 GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant;ENSG00000114480|ENST00000429644|GBE1;GBE1|p.G429Vfs*7|2|0.09|ENSG00000114480|chr3:81586141-81586141|C/-|frameshift_variant GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7764892578125 2 544.306001 1086.59745 0.28572 0.00015552 4.1994 0.0022858 4.4851 0.0024413 544.8112002287845 66.503 0.14076 63.006 62.903 63.044 -3.4965 5 3 2 0 0 0 0.99494 1 12444 12444 4.756 0.42677 1 615240 28947 2793 19360 19368 28491 28491 0.05761459296695648 LSNKRSTRFI 10 Unmodified _LSNKRSTRFI_ 0 0 0 REV__KBTBD8|p.V549I|1|0.21|ENSG00000163376|chr3:67008224-67008224|G/A|missense_variant REV__KBTBD8|p.V549I|1|0.21|ENSG00000163376|chr3:67008224-67008224|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 611.3252563476562 2 611.356754 1220.69895 0.41344 0.00025276 1.1448 0.00069989 1.5583 0.00095265 611.8580678120887 147.18 0.21271 142.06 141.93 142.14 -5.1108 7 5 2 0 0 0 0.75676 1 28487 28487 3.5965 0 1 1039300 + 28948 23698 19361 19369 28492 28492 0.09743285928607293 LSNLSNLL 8 Unmodified _LSNLSNLL_ 0 0 0 nc|ENSG00000155755|Q96Q45-4|TMEM237;nc|ENSG00000155755|Q96Q45-2|TMEM237;ENSG00000155755|ENST00000409883|TMEM237;nc|ENSG00000155755|Q96Q45-5|TMEM237;nc|ENSG00000155755|Q96Q45-3|TMEM237 nc|ENSG00000155755|Q96Q45-4|TMEM237 nc|ENSG00000155755|Q96Q45-4|TMEM237 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22772216796875 2 437.255643 872.496732 -0.12878 -5.6311E-05 0.24918 0.00010895 0.12039 5.2643E-05 437.2556883666659 69.042 0.67051 69.042 68.718 69.389 0 32 18 3 0 0 0 0.83888 1 13323 13323 30.637 0 1 2659100 28949 5060 19362 19370 28493 28493 0.05538382523195651 LSNNNLTTLP 10 Unmodified _LSNNNLTTLP_ 0 0 0 nc|ENSG00000126500|Q9NZU1-1|FLRT1;ENSG00000126500|ENST00000682287|FLRT1 nc|ENSG00000126500|Q9NZU1-1|FLRT1 nc|ENSG00000126500|Q9NZU1-1|FLRT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.794189453125 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 54.977 1 52.093 51.593 52.593 -2.8837 0 0 0 0.22566 1 10507 10507 16.149 4.5088 1 28950 3433 19363 19371 28494 28494 0.032325202637593975 LSNRCSPP 8 Unmodified _LSNRCSPP_ 0 0 0 REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2361145019531 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 86.884 1 86.884 86.384 87.384 0 0 0 0 0.19342 1 16957 16957 26.884 5.137 1 + 28951 25559 19364 19372 28495 28495 -0.023875877026057424 LSNRRVRYKSY 11 Unmodified _LSNRRVRYKSY_ 0 0 0 REV__ENST00000557377.1_1_14:80993182-80997257:-|nuORF REV__ENST00000557377.1_1_14:80993182-80997257:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7863464355469 3 481.27227 1440.79498 0.022532 1.0844E-05 -1.0956 -0.00052728 -1.0731 -0.00051643 481.271731199385 132.39 0.39346 127.75 127.48 127.88 -4.6399 17 10 2 0 0 0 0.80907 1 26085 26085 2.4348 0.18206 1 1969600 + 28952 14730 19365 19373 28496 28496 0.09221433768698262 LSNRRVRYKSY 11 Unmodified _LSNRRVRYKSY_ 0 0 0 REV__ENST00000557377.1_1_14:80993182-80997257:-|nuORF REV__ENST00000557377.1_1_14:80993182-80997257:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2409362792969 3 481.27227 1440.79498 0.068777 3.31E-05 -0.15915 -7.6596E-05 -0.090377 -4.3496E-05 481.6069705149505 132.55 0.35721 127.7 127.57 127.92 -4.8527 16 9 2 0 0 0 0.79428 1 25464 25464 4.4062 1.3339 1 2361700 + 28953 14730 19365 19373 28497 28497 0.09221433768698262 LSNVYFTI 8 Unmodified _LSNVYFTI_ 0 0 0 ASB5|p.L24M|1|0.17|ENSG00000164122|chr4:176269039-176269039|G/T|missense_variant;ENSG00000164122|ENST00000296525|ASB5 ASB5|p.L24M|1|0.17|ENSG00000164122|chr4:176269039-176269039|G/T|missense_variant ASB5|p.L24M|1|0.17|ENSG00000164122|chr4:176269039-176269039|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73760986328125 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 52.725 1 49.629 49.129 50.129 -3.0954 0 0 0 0.20618 1 9738 9738 20.454 2.3073 1 28954 230 19366 19374 28498 28498 0.02195266665944473 LSPARAEW 8 Unmodified _LSPARAEW_ 0 0 0 REV__nc|ENSG00000162493|Q86YL7-4|PDPN REV__nc|ENSG00000162493|Q86YL7-4|PDPN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2471923828125 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 106.87 1 106.87 106.37 107.37 0 0 0 0 0.17894 1 21012 21012 32.117 3.6301 1 + 28955 24126 19367 19375 28499 28499 0.009566315832330474 LSPDYREAFY 10 Unmodified _LSPDYREAFY_ 0 0 0 REV__ABCC12|p.S20Y|1|0.33|ENSG00000140798|chr16:48146366-48146366|G/T|missense_variant REV__ABCC12|p.S20Y|1|0.33|ENSG00000140798|chr16:48146366-48146366|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.76220703125 2 630.798403 1259.58225 0.21678 0.00013674 -2.3505 -0.0014827 -2.1337 -0.001346 630.7971737526922 78.576 0.28583 74.771 74.663 74.949 -3.8048 10 7 2 0 0 0 0.67319 1 14895 14895 13.906 0 1 1032000 + 28956 12901 19368 19376 28500 28500 -0.03715497081793728 LSPDYTETLL 10 Unmodified _LSPDYTETLL_ 0 0 0 tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1 tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1 tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3377075195312 2 576.295162 1150.57577 NaN NaN NaN NaN NaN NaN NaN 141.78 1 137.13 136.63 137.63 -4.6493 0 0 0 0.22588 1 28013 28013 9.3831 1.473 1 28957 26171 19369 19377 28501 28501 0.006505649668270053 LSPEAPPKML 10 Unmodified _LSPEAPPKML_ 0 0 0 ENST00000554614.2_1_14:73711044-73711323:-|nuORF ENST00000554614.2_1_14:73711044-73711323:-|nuORF ENST00000554614.2_1_14:73711044-73711323:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2619018554688 2 541.79936 1081.58417 0.22673 0.00012284 -0.19137 -0.00010368 0.035368 1.9162E-05 541.7992899346712 78.292 0.53716 74.829 74.465 75.002 -3.4633 24 14 2 0 0 0 0.81109 1 15232 15232 13.042 13.042 1 1553700 28958 11223 19370 19378 28502 28502 0.046638404024406555 LSPEYAGKAF 10 Unmodified _LSPEYAGKAF_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3;LEMD3|p.K849T|1|0.14|ENSG00000174106|chr12:65245913-65245913|A/C|missense_variant;ENST00000539442.1_1_12:65639428-65640102:+|nuORF ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2703857421875 2 541.779482 1081.54441 0.34862 0.00018888 0.78454 0.00042505 1.1332 0.00061392 542.2808731775411 153.37 0.17706 148.6 148.44 148.62 -4.7684 5 4 2 0 0 0 0.86078 1 30453 30453 12.241 6.5088 1 995510 28959 6327 19371 19379 28503 28503 0.0069003672338112665 LSPFALPYWER 11 Unmodified _LSPFALPYWER_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24462890625 3 460.243317 1377.70812 NaN NaN NaN NaN NaN NaN NaN 87.944 1 83.949 83.449 84.449 -3.9953 0 0 0 0.22632 1 16749 16749 5.4027 0 1 28960 2479 19372 19380 28504 28504 0.03437634494252961 LSPFIKKF 8 Unmodified _LSPFIKKF_ 0 0 0 REV__nc|ENSG00000083799|Q9NQC7-2|CYLD REV__nc|ENSG00000083799|Q9NQC7-2|CYLD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2554626464844 2 490.302396 978.590239 NaN NaN NaN NaN NaN NaN NaN 154.39 1 154.39 153.89 154.89 0 0 0 0 0.21486 1 30946 30946 5.2307 0 1 + 28961 14458 19373 19381 28505 28505 0.10008726696264603 LSPFIKKF 8 Unmodified _LSPFIKKF_ 0 0 0 REV__nc|ENSG00000083799|Q9NQC7-2|CYLD REV__nc|ENSG00000083799|Q9NQC7-2|CYLD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25750732421875 2 490.302396 978.590239 NaN NaN NaN NaN NaN NaN NaN 159.88 1 155.08 154.58 155.58 -4.7952 0 0 0 0.21486 1 31788 31788 5.2307 0 1 + 28962 14458 19373 19381 28506 28506 0.10008726696264603 LSPFKSIRF 9 Unmodified _LSPFKSIRF_ 0 0 0 REV__ENST00000445586.1_1_X:48365300-48367200:-|nuORF REV__ENST00000445586.1_1_X:48365300-48367200:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7904663085938 2 547.821484 1093.62842 NaN NaN NaN NaN NaN NaN NaN 141.09 1 136.1 135.6 136.6 -4.9877 0 0 0 0.23508 1 27164 27164 7.2892 0 1 + 28963 21752 19374 19382 28507 28507 0.08534612610947079 LSPGHQEHDIE 11 Unmodified _LSPGHQEHDIE_ 0 0 0 nc|ENSG00000103034|Q9ULP0-7|NDRG4 nc|ENSG00000103034|Q9ULP0-7|NDRG4 nc|ENSG00000103034|Q9ULP0-7|NDRG4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7557983398438 2 631.294016 1260.57348 0.33617 0.00021223 -1.3801 -0.00087126 -1.0439 -0.00065903 631.7934454096675 144.09 0.168 139.03 138.97 139.14 -5.0671 5 4 2 0 0 0 0.88294 1 27811 27811 0.11104 0 1 3548600 28964 12262 19375 19383 28508 28508 -0.046384707182596685 LSPGKLKQLI 10 Unmodified _LSPGKLKQLI_ 0 0 0 nc|ENSG00000138336|Q8NFU7-3|TET1;ENSG00000138336|ENST00000373644|TET1;nc|ENSG00000138336|Q8NFU7-4|TET1;TET1|p.K776Nfs*19|2|0.36|ENSG00000138336|chr10:68645052-68645052|A/-|frameshift_variant;TET1|p.K775Lfs*23|1|0.07|ENSG00000138336|chr10:68645051-68645052|-/TTAGTTAC|frameshift_variant;TET1|p.N1409Tfs*2|1|0.24|ENSG00000138336|chr10:68646950-68646950|A/-|frameshift_variant nc|ENSG00000138336|Q8NFU7-3|TET1 nc|ENSG00000138336|Q8NFU7-3|TET1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 548.7205200195312 2 548.858067 1095.70158 NaN NaN NaN NaN NaN NaN NaN 166.34 1 166.34 165.84 166.84 0 0 0 0 0.22588 1 33874 33874 6.7232 1.4925 1 28965 4165 19376 19384 28509 28509 0.15755741333555306 LSPKGVEEA 9 Unmodified _LSPKGVEEA_ 0 0 0 tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1 tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1 tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.247802734375 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 93.439 1 93.439 92.939 93.939 0 0 0 0 0.21469 1 18282 18282 19.257 2.1441 1 28966 26126 19377 19385 28510 28510 0.019457747979458873 LSPKLSVGL 9 Unmodified _LSPKLSVGL_ 0 0 0 REV__ENST00000403162.7_1_17:61843441-61843513:-|nuORF REV__ENST00000403162.7_1_17:61843441-61843513:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2389831542969 2 457.289485 912.564418 -0.35235 -0.00016113 0.51697 0.0002364 0.16461 7.5275E-05 457.2897381136369 111.8 0.60362 107.38 107.27 107.87 -4.4231 22 16 2 0 0 0 0.52027 1 22038 22038 25.399 4.9457 1 1737100 + 28967 21368 19378 19386 28511 28511 0.10463832454001931 LSPKLSVGL 9 Unmodified _LSPKLSVGL_ 0 0 0 REV__ENST00000403162.7_1_17:61843441-61843513:-|nuORF REV__ENST00000403162.7_1_17:61843441-61843513:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 457.289485 912.564418 0.5884 0.00026907 -0.26176 -0.0001197 0.32664 0.00014937 457.28929373950524 111.74 0.56033 107.51 107.25 107.81 -4.2289 0.033297 -0.00038034 NaN 25.399 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1238500 + 28968 21368 19378 19386 0.10463832454001931 LSPKPNSRF 9 Unmodified _LSPKPNSRF_ 0 0 0 ENST00000233813.4_1_2:217538988-217539135:-|nuORF ENST00000233813.4_1_2:217538988-217539135:-|nuORF ENST00000233813.4_1_2:217538988-217539135:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6912841796875 2 523.293091 1044.57163 NaN NaN NaN NaN NaN NaN NaN 95.184 1 91.303 90.803 91.803 -3.881 0 0 0 0.23508 1 18264 18264 11.64 0 1 28969 8164 19379 19387 28512 28512 0.05112565054423612 LSPLLKRPKK 10 Unmodified _LSPLLKRPKK_ 0 0 0 REV__ENST00000527247.5_1_11:126099171-126110978:+|nuORF REV__ENST00000527247.5_1_11:126099171-126110978:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.5347900390625 2 590.400433 1178.78631 NaN NaN NaN NaN NaN NaN NaN 167.19 1 162.3 161.8 162.8 -4.8916 0 0 0 2.8426 1 32846 32846 1.9064 0 1 + 28970 19364 19380 19388 28513 28513 0.20407111870144945 LSPLQATSY 9 Unmodified _LSPLQATSY_ 0 0 0 REV__QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant REV__QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2677001953125 2 490.258382 978.502212 0.065155 3.1943E-05 -0.064263 -3.1505E-05 0.0008921 4.3736E-07 490.2582587115382 44.68 0.42109 41.914 41.664 42.085 -2.7661 16 11 2 0 0 0 0.48644 1 8101 8101 20.454 0 1 819510 + 28971 14147 19381 19389 28514 28514 0.012100613149982564 LSPPILWAF 9 Unmodified _LSPPILWAF_ 0 0 0 REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2698364257812 2 522.299853 1042.58515 NaN NaN NaN NaN NaN NaN NaN 117.35 1 117.35 116.85 117.85 0 0 0 0 0.23411 1 23115 23115 13.508 0 1 + 28972 13708 19382 19390 28515 28515 0.06556422833659781 LSPPQNNKF 9 Unmodified _LSPPQNNKF_ 0 0 0 REV__ENST00000376511.6_1_6:30584443-30584617:-|nuORF REV__ENST00000376511.6_1_6:30584443-30584617:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2808837890625 2 522.777274 1043.53999 0.38759 0.00020262 -0.084103 -4.3967E-05 0.30349 0.00015866 522.7771016819851 41.558 0.8769 41.558 41.058 41.935 0 48 24 3 0 0 0 0.62921 1 7773 7773 24.021 4.7636 1 2220700 + 28973 21079 19383 19391 28516 28516 0.019965723004588654 LSPPQNNKF 9 Unmodified _LSPPQNNKF_ 0 0 0 REV__ENST00000376511.6_1_6:30584443-30584617:-|nuORF REV__ENST00000376511.6_1_6:30584443-30584617:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2819213867188 2 522.777274 1043.53999 -0.66477 -0.00034753 1.576 0.00082391 0.91126 0.00047639 523.2797721435803 44.558 0.68756 41.792 41.36 42.048 -2.7661 48 19 3 0 0 0 0.66788 1 8021 8021 29.082 10.935 1 1942700 + 28974 21079 19383 19391 28517 28517 0.019965723004588654 LSPQDQVS 8 Unmodified _LSPQDQVS_ 0 0 0 REV__nc|ENSG00000080802|O95628-6|CNOT4 REV__nc|ENSG00000080802|O95628-6|CNOT4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2264404296875 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 53.453 1 50.569 50.069 51.069 -2.8837 0 0 0 0.23182 1 10182 10182 0.68139 0 1 + 28975 23955 19384 19392 28518 28518 -0.017353712702401936 LSPRPLLRRLK 11 Unmodified _LSPRPLLRRLK_ 0 0 0 ENST00000568925.1_1_16:77246444-77246825:+|nuORF ENST00000568925.1_1_16:77246444-77246825:+|nuORF ENST00000568925.1_1_16:77246444-77246825:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 675.06396484375 2 674.948613 1347.88267 NaN NaN NaN NaN NaN NaN NaN 167.59 1 162.8 162.3 163.3 -4.7898 0 0 0 0.23698 1 33817 33817 1.1933 0.79263 1 28976 11401 19385 19393 28519 28519 0.22264679430099932 LSPSHSFLR 9 Unmodified _LSPSHSFLR_ 0 0 0 ENST00000438801.1_1_1:80749082-80749172:+|nuORF ENST00000438801.1_1_1:80749082-80749172:+|nuORF ENST00000438801.1_1_1:80749082-80749172:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2811889648438 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 143.6 1 138.94 138.44 139.44 -4.656 0 0 0 0.23508 1 28404 28404 6.2058 0 1 28977 9865 19386 19394 28520 28520 0.036402785373638835 LSPSLLHAASR 11 Unmodified _LSPSLLHAASR_ 0 0 0 ENST00000440408.5_1_Y:14774305-14774422:+|nuORF ENST00000440408.5_1_Y:14774305-14774422:+|nuORF ENST00000440408.5_1_Y:14774305-14774422:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3333129882812 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 148.01 1 142.95 142.45 143.45 -5.0595 0 0 0 0.22683 1 28664 28664 10.8 0.64894 1 28978 9884 19387 19395 28521 28521 0.07655908145943613 LSPSLPVPGL 10 Unmodified _LSPSLPVPGL_ 0 0 0 nc|ENSG00000180525|Q8N8Z3|DIP2C-AS1 nc|ENSG00000180525|Q8N8Z3|DIP2C-AS1 nc|ENSG00000180525|Q8N8Z3|DIP2C-AS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2739562988281 2 490.294768 978.574983 0.035434 1.7373E-05 0.27872 0.00013666 0.31416 0.00015403 490.2947815189751 141.55 0.70114 136.68 136.36 137.06 -4.8678 43 19 3 0 0 0 0.71097 1 27380 27380 10.074 0.6908 1 3946900 28979 12494 19388 19396 28522 28522 0.084838151084341 LSPSLWPLM 9 Unmodified _LSPSLWPLM_ 0 0 0 ENST00000450269.5_1_1:45274176-45274422:+|nuORF ENST00000450269.5_1_1:45274176-45274422:+|nuORF ENST00000450269.5_1_1:45274176-45274422:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2708129882812 2 522.283346 1042.55214 NaN NaN NaN NaN NaN NaN NaN 150.41 1 145.29 144.79 145.79 -5.1204 0 0 0 0.19684 1 29150 29150 1.2148 0.80657 1 28980 9972 19389 19397 28523 28523 0.03256472719294834 LSPSPVFCL 9 Unmodified _LSPSPVFCL_ 0 0 0 ENST00000257290.9_1_4:55163057-55163270:+|nuORF ENST00000257290.9_1_4:55163057-55163270:+|nuORF ENST00000257290.9_1_4:55163057-55163270:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78326416015625 2 481.754421 961.494289 NaN NaN NaN NaN NaN NaN NaN 92.945 1 89.101 88.601 89.601 -3.844 0 0 0 0.20628 1 17812 17812 21.747 1.293 1 28981 8263 19390 19398 28524 28524 0.012002107938656081 LSPSRALTL 9 Unmodified _LSPSRALTL_ 0 0 0 ENST00000216044.9_1_22:39127397-39127706:+|nuORF ENST00000216044.9_1_22:39127397-39127706:+|nuORF ENST00000216044.9_1_22:39127397-39127706:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7239990234375 2 479.290017 956.565481 0.15171 7.2713E-05 -0.16181 -7.7552E-05 -0.010095 -4.8386E-06 479.2898067634736 117.12 0.69292 112.63 112.18 112.87 -4.486 25 19 2 0 0 0 0.70212 1 23128 23128 21.537 3.3906 1 970960 28982 8106 19391 19399 28525 28525 0.0854604682289164 LSPSTDVYYLC 11 Unmodified _LSPSTDVYYLC_ 0 0 0 REV__ENST00000498078.1_1_13:41303510-41323454:-|nuORF REV__ENST00000498078.1_1_13:41303510-41323454:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7499389648438 2 630.794472 1259.57439 NaN NaN NaN NaN NaN NaN NaN 138.34 1 133.42 132.92 133.92 -4.9216 0 0 0 0.224 1 26600 26600 13.042 3.6593 1 + 28983 22407 19392 19400 28526 28526 -0.04501392393581227 LSPTFVLW 8 Unmodified _LSPTFVLW_ 0 0 0 ENSG00000205108|ENST00000378788|FAM205A;ENSG00000187791|ENST00000340783|FAM205C;nc|ENSG00000187791|A6NFA0|SPATA31F3 ENSG00000205108|ENST00000378788|FAM205A;nc|ENSG00000187791|A6NFA0|SPATA31F3 ENSG00000205108|ENST00000378788|FAM205A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77001953125 2 481.770929 961.527304 NaN NaN NaN NaN NaN NaN NaN 119.42 1 119.42 118.92 119.92 0 0 0 0 0.19954 1 23529 23529 24.674 0 1 28984 7629;12527 19393 19401 28527 28527 0.04500160908230555 LSPTPGDPM 9 Unmodified _LSPTPGDPM_ 0 0 0 ENSG00000130287|ENST00000252575|NCAN;NCAN|p.M504Wfs*14|1|0.14|ENSG00000130287|chr19:19226917-19226917|G/-|frameshift_variant ENSG00000130287|ENST00000252575|NCAN ENSG00000130287|ENST00000252575|NCAN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2193298339844 2 457.718036 913.421518 0.030166 1.3808E-05 -2.4332 -0.0011137 -2.403 -0.0010999 457.71683347997555 105.66 0.35398 101.29 101.05 101.4 -4.3764 18 9 2 0 0 0 0.55979 1 20241 20241 15.847 1.2655 1 565840 28985 3596 19394 19402 28528 28528 -0.03865542999540139 LSPTTGHCN 9 Unmodified _LSPTTGHCN_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2495422363281 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 57.921 1 55.011 54.511 55.511 -2.9105 0 0 0 0.22621 1 11116 11116 15.847 1.2655 1 28986 7305 19395 19403 28529 28529 -0.059801954278327685 LSPVAPIVLV 10 Unmodified _LSPVAPIVLV_ 0 0 0 REV__ENST00000505914.5_1_5:1323907-1324045:-|nuORF REV__ENST00000505914.5_1_5:1323907-1324045:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 504.3369140625 2 504.328611 1006.64267 NaN NaN NaN NaN NaN NaN NaN 164.99 1 160.01 159.51 160.51 -4.9811 0 0 0 2.8426 1 32219 32219 0.26539 0 1 + 28987 22483 19396 19404 28530 28530 0.13961265039222326 LSPWTRWWQYF 11 Unmodified _LSPWTRWWQYF_ 0 0 0 OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3873291015625 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 77.466 1 77.466 76.966 77.966 0 0 0 0 0.23324 1 15062 15062 5.7319 2.4505 1 28988 12728 19397 19405 28531 28531 -0.005158718658321959 LSPWTRWWQYF 11 Unmodified _LSPWTRWWQYF_ 0 0 0 OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3866577148438 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 174.86 1 174.86 174.36 175.36 0 0 0 0 0.23698 1 36209 36209 1.3295 0 1 28989 12728 19397 19405 28532 28532 -0.005158718658321959 LSPWTRWWQYF 11 Unmodified _LSPWTRWWQYF_ 0 0 0 OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3823852539062 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 177.61 1 177.61 177.11 178.11 0 0 0 0 0.23698 1 36791 36791 1.3295 0.13619 1 28990 12728 19397 19405 28533 28533 -0.005158718658321959 LSPWTRWWQYF 11 Unmodified _LSPWTRWWQYF_ 0 0 0 OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3839721679688 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 150.29 1 145.17 144.67 145.67 -5.1204 0 0 0 0.23698 1 29125 29125 1.3295 0.9789 1 28991 12728 19397 19405 28534 28534 -0.005158718658321959 LSQDQYLV 8 Unmodified _LSQDQYLV_ 0 0 0 nc|ENSG00000211456|Q9NTJ5-2|SACM1L nc|ENSG00000211456|Q9NTJ5-2|SACM1L nc|ENSG00000211456|Q9NTJ5-2|SACM1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 483.8351745605469 2 483.250557 964.486562 0.17398 8.4076E-05 -1.588 -0.00076739 -1.414 -0.00068331 483.24973572495526 146.04 0.69261 140.93 140.62 141.31 -5.1108 31 19 2 0 0 0 1.0095 1 28205 28205 5.7604 0 1 2088000 28992 12570 19398 19406 28535 28535 0.002897747979432097 LSQDQYLV 8 Unmodified _LSQDQYLV_ 0 0 0 nc|ENSG00000211456|Q9NTJ5-2|SACM1L nc|ENSG00000211456|Q9NTJ5-2|SACM1L nc|ENSG00000211456|Q9NTJ5-2|SACM1L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 483.250557 964.486562 0.19357 9.3545E-05 -1.4006 -0.00067685 -1.2071 -0.00058331 483.2496718632598 145.91 0.58952 140.91 140.64 141.23 -5 -0.010365 0.00011485 NaN 5.7604 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1564400 28993 12570 19398 19406 0.002897747979432097 LSQEEMPS 8 Unmodified _LSQEEMPS_ 0 0 0 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2311706542969 2 460.705125 919.395698 -0.10361 -4.7735E-05 0.78437 0.00036137 0.68076 0.00031363 460.7052665185558 79.541 1.2919 75.865 75.267 76.559 -3.676 63 36 2 0 0 0 0.66066 1 15177 15177 21.747 2.4897 1 2887900 + 28994 24026 19399 19407 28536 28536 -0.06722437241830903 LSQEILLCF 9 Unmodified _LSQEILLCF_ 0 0 0 REV__ENSG00000273749|ENST00000617928|CYFIP1 REV__ENSG00000273749|ENST00000617928|CYFIP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2863159179688 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 73.108 1 69.48 68.98 69.98 -3.6275 0 0 0 0.21848 1 13814 13814 18.135 1.1927 1 + 28995 19922 19400 19408 28537 28537 0.02792151511107477 LSQEITRD 8 Unmodified _LSQEITRD_ 0 0 0 ENSG00000170891|ENST00000307746|CYTL1 ENSG00000170891|ENST00000307746|CYTL1 ENSG00000170891|ENST00000307746|CYTL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24151611328125 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 152.63 1 147.45 146.95 147.95 -5.1759 0 0 0 0.22674 1 29582 29582 2.643 1.9616 1 28996 6108 19401 19409 28538 28538 0.005799891668402779 LSQERIRRS 9 Unmodified _LSQERIRRS_ 0 0 0 nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 382.2223205566406 3 382.223028 1143.64725 NaN NaN NaN NaN NaN NaN NaN 115.64 1 111.06 110.56 111.56 -4.5815 0 0 0 0.23508 1 22201 22201 2.7352 0.82882 1 28997 12471 19402 19410 28539 28539 0.08117542234708708 LSQESGVAQ 9 Unmodified _LSQESGVAQ_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2306213378906 2 459.729989 917.445425 0.45193 0.00020777 -0.59532 -0.00027369 -0.14339 -6.592E-05 459.72979858023075 42.444 0.62048 42.444 42.083 42.703 0 25 17 2 0 0 0 0.28819 1 7911 7911 32.305 0 1 1330200 28998 4649 19403 19411 28540 28540 -0.01659986241520528 LSQFAHYRRKQ 11 Unmodified _LSQFAHYRRKQ_ 0 0 0 ENSG00000115159|ENST00000438166|GPD2;ENST00000495851.5_1_2:157332617-157358313:+|nuORF;GPD2|p.F204Sfs*10|1|0.44|ENSG00000115159|chr2:156513444-156513444|T/-|frameshift_variant ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7381286621094 3 478.596865 1432.76877 0.40706 0.00019482 -0.37317 -0.0001786 0.03389 1.6219E-05 478.59684079674025 21.058 0.28109 19.584 19.42 19.701 -1.4742 15 7 3 0 0 0 0.56281 3 3540 3528;3537;3540 19.987 11.7 1 559460 28999 2825 19404 19412 28541;28542;28543 28543 0.06969164597194322 LSQFAHYRRKQ 11 Unmodified _LSQFAHYRRKQ_ 0 0 0 ENSG00000115159|ENST00000438166|GPD2;ENST00000495851.5_1_2:157332617-157358313:+|nuORF;GPD2|p.F204Sfs*10|1|0.44|ENSG00000115159|chr2:156513444-156513444|T/-|frameshift_variant ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 478.596865 1432.76877 -0.2237 -0.00010706 0.2463 0.00011788 0.022606 1.0819E-05 478.5970335881576 20.862 0.2723 19.477 19.341 19.614 -1.3847 0.022114 0.00021164 NaN 19.987 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 873800 29000 2825 19404 19412 0.06969164597194322 LSQFAHYRRKQ 11 Unmodified _LSQFAHYRRKQ_ 0 0 0 ENSG00000115159|ENST00000438166|GPD2;ENST00000495851.5_1_2:157332617-157358313:+|nuORF;GPD2|p.F204Sfs*10|1|0.44|ENSG00000115159|chr2:156513444-156513444|T/-|frameshift_variant ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 478.596865 1432.76877 -0.74263 -0.00035542 0.36266 0.00017357 -0.37997 -0.00018185 478.9311470672444 21.242 0.31213 19.521 19.39 19.702 -1.7211 0.065272 0.0003787 NaN 19.987 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 345330 29001 2825 19404 19412 0.06969164597194322 LSQGLLPLPQ 10 Unmodified _LSQGLLPLPQ_ 0 0 0 nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10;ENST00000478410.1_1_X:47038731-47039132:+|nuORF;RBM10|p.R332Afs*49|1|0.42|ENSG00000182872|chrX:47179970-47179971|-/G|frameshift_variant nc|ENSG00000182872|P98175-4|RBM10 nc|ENSG00000182872|P98175-4|RBM10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2644653320312 2 533.318774 1064.623 NaN NaN NaN NaN NaN NaN NaN 162.14 1 157 156.5 157.5 -5.1438 0 0 0 0.22588 1 31495 31495 6.2058 0.47393 1 29002 6816 19405 19413 28544 28544 0.09326889028466212 LSQGRNLMQ 9 Unmodified _LSQGRNLMQ_ 0 0 0 ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1 ENST00000571307.1_1_17:5433304-5487319:-|nuORF ENST00000571307.1_1_17:5433304-5487319:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6914672851562 2 523.774208 1045.53386 NaN NaN NaN NaN NaN NaN NaN 150.48 1 145.28 144.78 145.78 -5.1994 0 0 0 0.23508 1 29161 29161 10.074 0.6908 1 29003 1812 19406 19414 28545 28545 0.012917307972884373 LSQHRDSCEW 10 Unmodified _LSQHRDSCEW_ 0 0 0 ENST00000433411.7_1_17:18062924-18082138:+|nuORF ENST00000433411.7_1_17:18062924-18082138:+|nuORF ENST00000433411.7_1_17:18062924-18082138:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7543334960938 2 630.774936 1259.53532 0.69698 0.00043964 1.069 0.00067429 1.766 0.0011139 631.2764114748123 161.92 0.17674 156.74 156.58 156.75 -5.1878 6 4 2 0 0 0 0.74994 1 31422 31422 5.7319 0.43497 1 2456300 29004 9810 19407 19415 28546 28546 -0.0840667990462407 LSQKQRLDEK 10 Unmodified _LSQKQRLDEK_ 0 0 0 REV__ENSG00000154493|ENST00000488181|C10orf90 REV__ENSG00000154493|ENST00000488181|C10orf90 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7653198242188 2 622.851501 1243.68845 NaN NaN NaN NaN NaN NaN NaN 148.39 1 148.39 147.89 148.89 0 0 0 0 0.22588 1 29696 29696 7.1017 1.3699 1 + 29005 17184 19408 19416 28547 28547 0.07635258483514917 LSQLKNSYL 9 Unmodified _LSQLKNSYL_ 0 0 0 REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2 REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26806640625 2 533.300581 1064.58661 0.23921 0.00012757 -0.1895 -0.00010106 0.04971 2.6511E-05 533.3004154698592 126.55 0.93089 121.85 121.39 122.32 -4.6998 77 25 4 0 0 0 0.52242 1 24288 24288 29.082 0 1 39798000 + 29006 15108 19409 19417 28548 28548 0.05690012131753974 LSQQDSIKF 9 Unmodified _LSQQDSIKF_ 0 0 0 REV__ENST00000261674.8_1_12:132284063-132284246:+|nuORF REV__ENST00000261674.8_1_12:132284063-132284246:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.28662109375 2 533.282389 1064.55022 -0.12727 -6.7868E-05 1.0983 0.00058571 0.97105 0.00051784 533.283199294547 69.987 0.7851 69.987 69.524 70.309 0 33 21 2 0 0 0 0.38188 1 13464 13464 26.884 0.61551 1 3815600 + 29007 20189 19410 19418 28549 28549 0.020531352350417365 LSQQYELY 8 Unmodified _LSQQYELY_ 0 0 0 REV__ENSG00000146476|ENST00000367294|ARMT1 REV__ENSG00000146476|ENST00000367294|ARMT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2657470703125 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 50.113 1 47.114 46.614 47.614 -2.999 0 0 0 0.21486 1 9173 9173 11.64 2.2929 1 + 29008 16892 19411 19419 28550 28550 -0.022422425476179342 LSQREHRWLYL 11 Unmodified _LSQREHRWLYL_ 0 0 0 ENST00000528246.5_1_8:10065351-10102658:+|nuORF ENST00000528246.5_1_8:10065351-10102658:+|nuORF ENST00000528246.5_1_8:10065351-10102658:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 500.38848876953125 3 500.94052 1499.79973 0.20286 0.00010162 0.15147 7.5878E-05 0.35433 0.0001775 500.94066859554107 156.7 0.10507 156.7 156.65 156.76 0 4 2 2 0 0 0 0.96216 1 31435 31435 0.45452 0 1 1682600 29009 10933 19412 19420 28551 28551 0.06982317911456448 LSQRELELQE 10 Unmodified _LSQRELELQE_ 0 0 0 ENSG00000105143|ENST00000594383|SLC1A6 ENSG00000105143|ENST00000594383|SLC1A6 ENSG00000105143|ENST00000594383|SLC1A6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7616577148438 2 622.827692 1243.64083 NaN NaN NaN NaN NaN NaN NaN 141.37 1 136.38 135.88 136.88 -4.9877 0 0 0 0.22588 1 27222 27222 8.7454 0 1 29010 2281 19413 19421 28552 28552 0.028755594926451522 LSQSAPTGL 9 Unmodified _LSQSAPTGL_ 0 0 0 ENSG00000136002|ENST00000409359|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4 ENSG00000136002|ENST00000409359|ARHGEF4 ENSG00000136002|ENST00000409359|ARHGEF4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22857666015625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 73.251 1 69.712 69.212 70.212 -3.5385 0 0 0 0.081239 1 13900 13900 41.84 7.7372 1 29011 3975 19414 19422 28553 28553 0.019015056264720442 LSQSAPTGL 9 Unmodified _LSQSAPTGL_ 0 0 0 ENSG00000136002|ENST00000409359|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4 ENSG00000136002|ENST00000409359|ARHGEF4 ENSG00000136002|ENST00000409359|ARHGEF4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.235595703125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 73.287 1 69.749 69.249 70.249 -3.5385 0 0 0 0.12123 1 13908 13908 34.402 5.3201 1 29012 3975 19414 19422 28554 28554 0.019015056264720442 LSQSSGNGLV 10 Unmodified _LSQSSGNGLV_ 0 0 0 REV__ENST00000559000.5_1_15:57209963-57210377:-|nuORF REV__ENST00000559000.5_1_15:57209963-57210377:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78759765625 2 481.251089 960.487624 0.17266 8.3091E-05 -0.72688 -0.00034981 -0.55422 -0.00026672 481.25074098164595 152.79 0.66927 147.52 147.15 147.81 -5.2669 30 18 2 0 0 0 0.71097 1 29602 29602 10.074 1.4806 1 2419300 + 29013 23027 19415 19423 28555 28555 0.005799891668630153 LSQTIHAEDI 10 Unmodified _LSQTIHAEDI_ 0 0 0 REV__nc|ENSG00000126838|P20742-2|PZP REV__nc|ENSG00000126838|P20742-2|PZP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 376.1964111328125 3 376.196144 1125.5666 NaN NaN NaN NaN NaN NaN NaN 61.929 1 58.69 58.19 59.19 -3.2395 0 0 0 2.8426 1 11602 11602 0.063865 0 1 + 29014 15868 19416 19424 28556 28556 0.008842164011412024 LSQVDSCDSGA 11 Unmodified _LSQVDSCDSGA_ 0 0 0 REV__ENST00000413670.2_1_1:98510427-98510946:-|nuORF REV__ENST00000413670.2_1_1:98510427-98510946:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2754516601562 2 541.226953 1080.43935 NaN NaN NaN NaN NaN NaN NaN 148.09 1 143.38 142.88 143.88 -4.7095 0 0 0 0.22595 1 29402 29402 11.495 3.5846 1 + 29015 21441 19417 19425 28557 28557 -0.09764872535356517 LSQVLHEDGP 10 Unmodified _LSQVLHEDGP_ 0 0 0 CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant;CNKSR1|p.P512Hfs*58|2|0.35|ENSG00000142675|chr1:26188287-26188287|C/-|frameshift_variant;CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant;ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1 CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7796020507812 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 21.842 1 20.367 19.867 20.867 -1.4742 0 0 0 0.22323 1 3711 3711 24.021 4.7636 1 29016 594 19418 19426 28558 28558 -0.0026405277033063612 LSQVLLSPV 9 Unmodified _LSQVLLSPV_ 0 0 0 REV__ENSG00000171044|ENST00000416569|XKR6 REV__ENSG00000171044|ENST00000416569|XKR6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7391052246094 2 478.294768 954.574983 0.49504 0.00023678 -0.20878 -9.9857E-05 0.28627 0.00013692 478.2947581255885 116.41 0.98039 112.05 111.39 112.37 -4.3585 32 27 2 0 0 0 0.25976 1 22396 22396 17.113 0 1 1087000 + 29017 18196 19419 19427 28559 28559 0.09587815108420727 LSQVTCRL 8 Unmodified _LSQVTCRL_ 0 0 0 REV__ENST00000396959.2_1_3:12829056-12829584:-|nuORF REV__ENST00000396959.2_1_3:12829056-12829584:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2413635253906 2 460.25512 918.495686 NaN NaN NaN NaN NaN NaN NaN 75.654 1 75.654 75.154 76.154 0 0 0 0 0.17344 1 14698 14698 34.102 7.2188 1 + 29018 21290 19420 19428 28560 28560 0.03317844882644749 LSQWPLLPQ 9 Unmodified _LSQWPLLPQ_ 0 0 0 nc|ENSG00000142224|Q9UHD0-3|IL19 nc|ENSG00000142224|Q9UHD0-3|IL19 nc|ENSG00000142224|Q9UHD0-3|IL19 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2782592773438 2 541.305667 1080.59678 NaN NaN NaN NaN NaN NaN NaN 159.87 1 154.62 154.12 155.12 -5.2526 0 0 0 0.22193 1 31022 31022 17.113 3.2068 1 29019 12360 19421 19429 28561 28561 0.059706198569983826 LSQYLKPL 8 Unmodified _LSQYLKPL_ 0 0 0 ENST00000606615.1_1_5:114598289-114598739:+|nuORF ENST00000606615.1_1_5:114598289-114598739:+|nuORF ENST00000606615.1_1_5:114598289-114598739:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7884826660156 2 481.289485 960.564418 0.045182 2.1746E-05 -0.1201 -5.7804E-05 -0.074921 -3.6059E-05 481.2894924252617 135.26 0.80463 130.62 130.27 131.08 -4.6399 65 22 4 0 0 0 0.64227 1 26749 26749 19.439 0.18201 1 18604000 29020 11747 19422 19430 28562 28562 0.08255832453971834 LSRAMRMYERR 11 Unmodified _LSRAMRMYERR_ 0 0 0 nc|ENSG00000175267|A6NCI4-2|VWA3A;ENSG00000175267|ENST00000389398|VWA3A;VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant nc|ENSG00000175267|A6NCI4-2|VWA3A nc|ENSG00000175267|A6NCI4-2|VWA3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2579040527344 3 490.258978 1467.75511 NaN NaN NaN NaN NaN NaN NaN 130.52 1 125.88 125.38 126.38 -4.6359 0 0 0 0.22632 1 25721 25721 0.03141 0.0052036 1 29021 6397 19423 19431 28563 28563 0.03993847502101744 LSRAMRMYERR 11 Unmodified _LSRAMRMYERR_ 0 0 0 nc|ENSG00000175267|A6NCI4-2|VWA3A;ENSG00000175267|ENST00000389398|VWA3A;VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant nc|ENSG00000175267|A6NCI4-2|VWA3A nc|ENSG00000175267|A6NCI4-2|VWA3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2582702636719 3 490.258978 1467.75511 NaN NaN NaN NaN NaN NaN NaN 130.81 1 126.17 125.67 126.67 -4.6359 0 0 0 0.22632 1 25779 25779 0.0059557 0 1 29022 6397 19423 19431 28564 28564 0.03993847502101744 LSRAMRMYERR 11 Unmodified _LSRAMRMYERR_ 0 0 0 nc|ENSG00000175267|A6NCI4-2|VWA3A;ENSG00000175267|ENST00000389398|VWA3A;VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant nc|ENSG00000175267|A6NCI4-2|VWA3A nc|ENSG00000175267|A6NCI4-2|VWA3A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2597961425781 3 490.258978 1467.75511 NaN NaN NaN NaN NaN NaN NaN 130.57 1 125.74 125.24 126.24 -4.8355 0 0 0 0.22632 1 25073 25073 0.03141 0.0052036 1 29023 6397 19423 19431 28565 28565 0.03993847502101744 LSRCSGICLL 10 Unmodified _LSRCSGICLL_ 0 0 0 ENST00000482902.5_1_X:153060021-153061167:+|nuORF;ENST00000491833.5_1_X:153059692-153061167:+|nuORF ENST00000482902.5_1_X:153060021-153061167:+|nuORF ENST00000482902.5_1_X:153060021-153061167:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2825927734375 2 532.783187 1063.55182 0.30282 0.00016134 0.13144 7.0029E-05 0.43426 0.00023137 532.7845595783825 118.31 0.48169 113.81 113.6 114.08 -4.502 21 13 2 0 0 0 0.32088 1 23325 23325 36.127 1.195 1 1872000 29024 10407 19424 19432 28566 28566 0.02258729727782338 LSRDDDPV 8 Unmodified _LSRDDDPV_ 0 0 0 REV__ENSG00000106609|ENST00000341567|TMEM248 REV__ENSG00000106609|ENST00000341567|TMEM248 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2381896972656 2 458.722164 915.429775 0.26257 0.00012045 -0.21028 -9.646E-05 0.052288 2.3986E-05 458.72197383750995 123.73 0.72476 119.14 118.82 119.55 -4.5926 33 20 2 0 0 0 0.93477 1 23761 23761 18.135 0 1 2102200 + 29025 15057 19425 19433 28567 28567 -0.03132272758580257 LSRDLHLLRG 10 Unmodified _LSRDLHLLRG_ 0 0 0 ENST00000535813.5_1_11:67231974-67234980:-|nuORF;ENST00000545682.5_1_11:67231974-67232639:-|nuORF;ENST00000308022.6_2_11:67231974-67234980:-|nuORF ENST00000535813.5_1_11:67231974-67234980:-|nuORF ENST00000535813.5_1_11:67231974-67234980:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2764892578125 2 590.351471 1178.68839 0.348 0.00020544 0.8856 0.00052282 1.2336 0.00072826 590.352391706757 135.8 0.20523 135.8 135.75 135.95 0 6 5 2 0 0 0 0.72406 1 26931 26931 8.7454 0.58988 1 1434900 29026 8621 19426 19434 28568 28568 0.10619303274165759 LSRDNYEKA 9 Unmodified _LSRDNYEKA_ 0 0 0 REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1 REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7693481445312 2 548.275095 1094.53564 -1.0114 -0.00055453 1.1047 0.00060569 0.093317 5.1163E-05 548.2756726525123 18.945 0.59154 17.31 17.112 17.704 -1.6351 55 16 5 0 0 0 0.85111 1 2794 2794 6.7232 0 1 15337000 + 29027 25210 19427 19435 28569 28569 -0.007849369131008643 LSRDRDPA 8 Unmodified _LSRDRDPA_ 0 0 0 ENSG00000255181|ENST00000542437|CCDC166 ENSG00000255181|ENST00000542437|CCDC166 ENSG00000255181|ENST00000542437|CCDC166 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24432373046875 2 465.243598 928.472643 NaN NaN NaN NaN NaN NaN NaN 145.69 1 145.69 145.19 146.19 0 0 0 0 0.21486 1 29121 29121 12.532 0.89125 1 29028 7930 19428 19436 28570 28570 0.005545420895032294 LSRERAGF 8 Unmodified _LSRERAGF_ 0 0 0 tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1 tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1 tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 468.2583312988281 2 468.256508 934.498464 NaN NaN NaN NaN NaN NaN NaN 145.4 1 140.73 140.23 141.23 -4.6694 0 0 0 0.21323 1 28823 28823 14.582 0 1 29029 26402 19429 19437 28571 28571 0.0285943633180068 LSRFTTYEY 9 Unmodified _LSRFTTYEY_ 0 0 0 USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2550659179688 2 590.287671 1178.56079 NaN NaN NaN NaN NaN NaN NaN 157.6 1 152.33 151.83 152.83 -5.2712 0 0 0 0.23508 1 30570 30570 3.9444 0 1 29030 1204 19430 19438 28572 28572 -0.02134882110522085 LSRFVWFFSG 10 Unmodified _LSRFVWFFSG_ 0 0 0 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.75244140625 2 623.324391 1244.63423 0.42497 0.00026489 -0.66459 -0.00041425 -0.23962 -0.00014936 623.3227273158465 161.29 0.1474 156.06 156 156.15 -5.2299 5 3 2 0 0 0 0.90091 1 31323 31323 6.2058 0 1 1584600 29031 6021 19431 19439 28573 28573 0.021697111225876142 LSRGLHLLW 9 Unmodified _LSRGLHLLW_ 0 0 0 REV__ENST00000352684.2_1_8:356980-385646:+|nuORF REV__ENST00000352684.2_1_8:356980-385646:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.784912109375 2 547.827101 1093.63965 NaN NaN NaN NaN NaN NaN NaN 157.73 1 157.73 157.23 158.23 0 0 0 0 0.23508 1 31663 31663 11.64 0 1 + 29032 20773 19432 19440 28574 28574 0.09657434705081869 LSRGLWFGF 9 Unmodified _LSRGLWFGF_ 0 0 0 REV__ENST00000398659.8_2_2:3341907-3358370:-|nuORF REV__ENST00000398659.8_2_2:3341907-3358370:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2835693359375 2 541.792727 1081.5709 0.51503 0.00027904 -1.8607 -0.0010081 -1.3456 -0.00072905 542.294258841677 158.67 0.18138 153.4 153.3 153.48 -5.2712 6 4 2 0 0 0 0.84208 1 30768 30768 7.2892 0 1 1196400 + 29033 21333 19433 19441 28575 28575 0.03337770405369156 LSRIENQESD 10 Unmodified _LSRIENQESD_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2 REV__ENSG00000123104|ENST00000381340|ITPR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 595.8063354492188 2 595.786024 1189.55749 NaN NaN NaN NaN NaN NaN NaN 161.6 1 161.6 161.1 162.1 0 0 0 0 0.22588 1 32458 32458 6.2058 0.47393 1 + 29034 15716 19434 19442 28576 28576 -0.02970176955182069 LSRKGLEL 8 Unmodified _LSRKGLEL_ 0 0 0 REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2389831542969 2 458.284734 914.554916 -0.012091 -5.5413E-06 0.37002 0.00016957 0.35793 0.00016403 458.2848805482374 69.327 0.81039 69.327 68.966 69.777 0 42 22 2 0 0 0 0.21714 1 13358 13358 43.858 3.901 1 14836000 + 29035 21000 19435 19443 28577 28577 0.09422064168461475 LSRKGLEL 8 Unmodified _LSRKGLEL_ 0 0 0 REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2389831542969 2 458.284734 914.554916 -0.012091 -5.5413E-06 0.37002 0.00016957 0.35793 0.00016403 458.2848805482374 69.327 0.81039 69.327 68.966 69.777 0 42 22 2 0 0 0 0.49931 1 13358 13358 43.858 3.901 1 14836000 + 29036 21000 19435 19443 28578 28578 0.09422064168461475 LSRKGLEL 8 Unmodified _LSRKGLEL_ 0 0 0 REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2384033203125 2 458.284734 914.554916 -0.22688 -0.00010398 0.60331 0.00027649 0.37643 0.00017251 458.2849795338799 72.128 0.78133 68.817 68.388 69.169 -3.3107 39 21 2 0 0 0 0.31324 1 14097 14097 36.127 1.7253 1 7725000 + 29037 21000 19435 19443 28579 28579 0.09422064168461475 LSRKGLEL 8 Unmodified _LSRKGLEL_ 0 0 0 REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2392272949219 2 458.284734 914.554916 0.2281 0.00010454 0.027604 1.2651E-05 0.25571 0.00011719 458.28470545515063 72.376 0.75473 68.748 68.337 69.091 -3.6275 33 20 2 0 0 0 0.21714 1 13705 13705 43.858 2.0187 1 5086800 + 29038 21000 19435 19443 28580 28580 0.09422064168461475 LSRKGLEL 8 Unmodified _LSRKGLEL_ 0 0 0 REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2392272949219 2 458.284734 914.554916 0.2281 0.00010454 0.027604 1.2651E-05 0.25571 0.00011719 458.28470545515063 72.376 0.75473 68.748 68.337 69.091 -3.6275 33 20 2 0 0 0 0.49931 1 13705 13705 43.858 43.858 1 5086800 + 29039 21000 19435 19443 28581 28581 0.09422064168461475 LSRKQRRLI 9 Unmodified _LSRKQRRLI_ 0 0 0 WNT1|p.C170Lfs*6|1|0.42|ENSG00000125084|chr12:48980564-48980565|-/G|frameshift_variant;WNT1|p.G169Afs*30|9|0.3|ENSG00000125084|chr12:48980565-48980565|G/-|frameshift_variant;ENSG00000125084|ENST00000293549|WNT1 WNT1|p.C170Lfs*6|1|0.42|ENSG00000125084|chr12:48980564-48980565|-/G|frameshift_variant WNT1|p.C170Lfs*6|1|0.42|ENSG00000125084|chr12:48980564-48980565|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 585.6800537109375 2 585.383106 1168.75166 NaN NaN NaN NaN NaN NaN NaN 166.91 1 166.91 166.41 167.41 0 0 0 0 0.23508 1 34061 34061 4.756 0.42677 1 29040 3340 19436 19444 28582 28582 0.17403288782088566 LSRKRIKKIC 10 Unmodified _LSRKRIKKIC_ 0 0 0 REV__ENST00000367142.4_1_1:205682466-205682574:-|nuORF REV__ENST00000367142.4_1_1:205682466-205682574:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.75244140625 2 622.902817 1243.79108 NaN NaN NaN NaN NaN NaN NaN 116.06 1 111.71 111.21 112.21 -4.3585 0 0 0 0.22588 1 22344 22344 1.6526 0 1 + 29041 20912 19437 19445 28583 28583 0.1789367274129745 LSRLGANMLI 10 Unmodified _LSRLGANMLI_ 0 0 0 ENST00000560717.5_2_15:65295402-65319196:-|nuORF;ENSG00000103707|ENST00000220058|MTFMT ENST00000560717.5_2_15:65295402-65319196:-|nuORF ENST00000560717.5_2_15:65295402-65319196:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7965087890625 2 544.318251 1086.62195 0.33873 0.00018438 0.57332 0.00031207 0.91205 0.00049645 544.8199966126983 149.33 0.21149 149.33 149.27 149.48 0 7 5 2 0 0 0 0.87854 1 29924 29924 9.3831 5.4387 1 3106000 29042 2204 19438 19446 28584 28584 0.08210351387924675 LSRLNELEL 9 Unmodified _LSRLNELEL_ 0 0 0 REV__nc|ENSG00000110721|P35790-2|CHKA REV__nc|ENSG00000110721|P35790-2|CHKA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7708740234375 2 543.811313 1085.60807 0.33193 0.00018051 -0.16151 -8.7832E-05 0.17042 9.2676E-05 543.811184902297 125.41 0.70738 125.41 125.01 125.72 0 48 19 3 0 0 0 0.62314 1 24667 24667 11.495 0.6952 1 11730000 + 29043 15215 19439 19447 28585 28585 0.06869397160448898 LSRPAAFQR 9 Unmodified _LSRPAAFQR_ 0 0 0 ENST00000280562.9_1_12:123476423-123479403:-|nuORF ENST00000280562.9_1_12:123476423-123479403:-|nuORF ENST00000280562.9_1_12:123476423-123479403:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6849365234375 2 523.298707 1044.58286 -0.023698 -1.2401E-05 0.11278 5.9016E-05 0.089079 4.6615E-05 523.2987222613938 19.689 0.65775 18.292 18.102 18.76 -1.3966 32 18 3 0 0 0 0.60489 1 3288 3288 2.4985 2.1915 1 5566300 29044 8437 19440 19448 28586 28586 0.06235387148535665 LSRPGSPPP 9 Unmodified _LSRPGSPPP_ 0 0 0 REV__DIAPH3|p.E51Rfs*12|1|0.32|ENSG00000139734|chr13:60163617-60163617|G/-|frameshift_variant REV__DIAPH3|p.E51Rfs*12|1|0.32|ENSG00000139734|chr13:60163617-60163617|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75018310546875 2 454.253434 906.492316 0.11667 5.3E-05 -0.042684 -1.939E-05 0.07399 3.361E-05 454.2534107750682 35.178 0.37799 32.925 32.641 33.019 -2.2527 14 10 2 0 0 0 0.62921 1 6174 6174 18.146 5.1039 1 521680 + 29045 13680 19441 19449 28587 28587 0.03532918100279403 LSRPKPRLV 9 Unmodified _LSRPKPRLV_ 0 0 0 REV__KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant REV__KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2755126953125 2 533.3482 1064.68185 NaN NaN NaN NaN NaN NaN NaN 163.12 1 157.93 157.43 158.43 -5.1878 0 0 0 0.19638 1 31723 31723 0.029283 0 1 + 29046 23696 19442 19450 28588 28588 0.1520941011344803 LSRPLQPSAP 10 Unmodified _LSRPLQPSAP_ 0 0 0 REV__ENSG00000185013|ENST00000304081|NT5C1B REV__ENSG00000185013|ENST00000304081|NT5C1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2853393554688 2 533.306198 1064.59784 0.081549 4.3491E-05 0.28995 0.00015463 0.37149 0.00019812 533.3059609387752 82.088 0.87265 78.531 78.136 79.009 -3.557 80 24 5 0 0 0 0.67319 1 16113 16113 13.906 0.86358 1 13210000 + 29047 18929 19443 19451 28589 28589 0.06812834225888764 LSRQGPAET 9 Unmodified _LSRQGPAET_ 0 0 0 nc|ENSG00000284194|O43819|SCO2 nc|ENSG00000284194|O43819|SCO2 nc|ENSG00000284194|O43819|SCO2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.2061767578125 3 320.169929 957.487959 NaN NaN NaN NaN NaN NaN NaN 97.953 1 93.684 93.184 94.184 -4.2692 0 0 0 0.23508 1 18718 18718 2.7352 0 1 29048 12643 19444 19452 28590 28590 0.007514088867083046 LSRQWRSH 8 Unmodified _LSRQWRSH_ 0 0 0 ENST00000343544.8_1_2:88485199-88485639:+|nuORF;nc|ENSG00000144115|Q86YJ6-4|THNSL2;ENSG00000144115|ENST00000674334|THNSL2 ENST00000343544.8_1_2:88485199-88485639:+|nuORF ENST00000343544.8_1_2:88485199-88485639:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.0611572265625 3 357.19318 1068.55771 -0.42466 -0.00015169 -0.84835 -0.00030303 -1.273 -0.00045471 357.192504340799 63.722 0.41244 60.466 60.157 60.57 -3.2567 21 11 3 0 0 0 0.98676 1 11957 11957 10.824 2.6684 1 933960 29049 8878 19445 19453 28591 28591 0.026173323459943276 LSRQWRSH 8 Unmodified _LSRQWRSH_ 0 0 0 ENST00000343544.8_1_2:88485199-88485639:+|nuORF;nc|ENSG00000144115|Q86YJ6-4|THNSL2;ENSG00000144115|ENST00000674334|THNSL2 ENST00000343544.8_1_2:88485199-88485639:+|nuORF ENST00000343544.8_1_2:88485199-88485639:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 357.19318 1068.55771 0.18402 6.573E-05 -1.4737 -0.00052641 -1.2897 -0.00046068 357.19258099773316 63.826 0.34412 60.41 60.219 60.563 -3.4158 -0.027854 -0.00021726 NaN 10.824 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 847710 29050 8878 19445 19453 0.026173323459943276 LSRRFEFQ 8 Unmodified _LSRRFEFQ_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2596435546875 2 541.790715 1081.56688 0.33933 0.00018385 -0.97171 -0.00052646 -0.63237 -0.00034261 541.7893611927611 152.3 0.10875 147.55 147.46 147.57 -4.7523 4 2 2 0 0 0 1.0011 1 30251 30251 7.9102 0 1 1842600 29051 1661 19446 19454 28592 28592 0.029356809116507065 LSRRFPPR 8 Unmodified _LSRRFPPR_ 0 0 0 nc|ENSG00000165929|Q8N9U0-2|TC2N;ENSG00000165929|ENST00000435962|TC2N nc|ENSG00000165929|Q8N9U0-2|TC2N nc|ENSG00000165929|Q8N9U0-2|TC2N MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.22222900390625 3 343.54192 1027.60393 0.29541 0.00010148 -1.7087 -0.000587 -1.4133 -0.00048551 343.54126573114223 86.975 0.37923 83.024 82.79 83.169 -3.9503 12 10 2 0 0 0 1.0252 1 16535 16535 1.3295 0.46516 1 1005900 29052 5679 19447 19455 28593 28593 0.09123397248072251 LSRRFPPR 8 Unmodified _LSRRFPPR_ 0 0 0 nc|ENSG00000165929|Q8N9U0-2|TC2N;ENSG00000165929|ENST00000435962|TC2N nc|ENSG00000165929|Q8N9U0-2|TC2N nc|ENSG00000165929|Q8N9U0-2|TC2N MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 343.54192 1027.60393 -0.33713 -0.00011582 -1.3 -0.00044659 -1.6371 -0.00056241 343.54143818775736 86.689 0.20722 82.962 82.837 83.044 -3.727 -0.030938 0.00028008 NaN 1.3295 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 850700 29053 5679 19447 19455 0.09123397248072251 LSRRGLPLL 9 Unmodified _LSRRGLPLL_ 0 0 0 REV__ENST00000478753.4_3_16:30456569-30456872:-|nuORF REV__ENST00000478753.4_3_16:30456569-30456872:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.21099853515625 3 342.225709 1023.6553 NaN NaN NaN NaN NaN NaN NaN 103.1 1 98.781 98.281 99.281 -4.3208 0 0 0 0.23508 1 19744 19744 1.0715 0 1 + 29054 22146 19448 19456 28594 28594 0.14441721222135584 LSRRRRMKRRR 11 Unmodified _LSRRRRMKRRR_ 0 0 0 REV__ENST00000525722.1_1_11:812627-812858:+|nuORF REV__ENST00000525722.1_1_11:812627-812858:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 524.75537109375 3 524.33057 1569.96988 0.17847 9.3578E-05 -0.34936 -0.00018318 -0.17089 -8.9603E-05 524.3299700963994 133.92 0.13808 133.92 133.87 134.01 0 5 3 2 0 0 0 0.89134 1 26517 26517 0.0072825 0.0072825 1 3131900 + 29055 22684 19449 19457 28595 28595 0.20769575152712605 LSRSDVFRD 9 Unmodified _LSRSDVFRD_ 0 0 0 nc|ENSG00000163026|Q9H6R7-3|WDCP;ENSG00000163026|ENST00000295148|WDCP nc|ENSG00000163026|Q9H6R7-3|WDCP nc|ENSG00000163026|Q9H6R7-3|WDCP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7876586914062 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 147.54 1 142.83 142.33 143.33 -4.7095 0 0 0 0.21078 1 29276 29276 20.415 1.1575 1 29056 5394 19450 19458 28596 28596 0.008587693238041538 LSRSRHREYYY 11 Unmodified _LSRSRHREYYY_ 0 0 0 REV__nc|ENSG00000197579|Q9NS56-2|TOPORS REV__nc|ENSG00000197579|Q9NS56-2|TOPORS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 510.447998046875 3 510.59178 1528.75351 NaN NaN NaN NaN NaN NaN NaN 13.385 1 12.264 11.764 12.764 -1.1206 0 0 0 0.22632 1 1687 1687 0.094841 0 1 + 29057 19350 19451 19459 28597 28597 0.010282530093945752 LSRSRKIKY 9 Unmodified _LSRSRKIKY_ 0 0 0 ENST00000350997.11_1_11:61568553-61568607:-|nuORF ENST00000350997.11_1_11:61568553-61568607:-|nuORF ENST00000350997.11_1_11:61568553-61568607:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3363647460938 2 575.85639 1149.69823 0.15617 8.993E-05 -3.9604 -0.0022806 -3.8043 -0.0021907 576.3550497705216 87.477 0.21413 83.727 83.658 83.872 -3.7501 6 5 2 0 0 0 0.67531 1 16724 16724 7.9102 4.3137 1 3069600 29058 8926 19452 19460 28598 28598 0.12936491279538131 LSRTQLLHL 9 Unmodified _LSRTQLLHL_ 0 0 0 nc|ENSG00000128607|Q6PID8-2|KLHDC10;ENSG00000128607|ENST00000335420|KLHDC10 nc|ENSG00000128607|Q6PID8-2|KLHDC10 nc|ENSG00000128607|Q6PID8-2|KLHDC10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2647094726562 2 540.82984 1079.64513 0.198 0.00010708 2.0921 0.0011315 2.2901 0.0012386 540.8297773789445 146.84 0.13657 141.73 141.61 141.75 -5.1108 5 3 2 0 0 0 0.77732 1 28402 28402 4.3292 0 1 1771900 29059 3534 19453 19461 28599 28599 0.10849113496897189 LSRVKAAAL 9 Unmodified _LSRVKAAAL_ 0 0 0 ENSG00000169683|ENST00000306688|LRRC45 ENSG00000169683|ENST00000306688|LRRC45 ENSG00000169683|ENST00000306688|LRRC45 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651611328125 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 127.27 1 127.27 126.77 127.77 0 0 0 0 0.23508 1 25120 25120 1.0715 0.61312 1 29060 5999 19454 19462 28600 28600 0.11986056922410171 LSRWYRRHVQI 11 Unmodified _LSRWYRRHVQI_ 0 0 0 REV__nc|ENSG00000094631|Q9UBN7-2|HDAC6 REV__nc|ENSG00000094631|Q9UBN7-2|HDAC6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 505.1050109863281 3 505.288143 1512.8426 0.014516 7.3349E-06 -1.3225 -0.00066826 -1.308 -0.00066093 505.62174796065824 91.81 0.59296 88.002 87.719 88.312 -3.8083 23 16 2 0 0 0 0.96216 1 17611 17611 1.3296 0 1 2006400 + 29061 14594 19455 19463 28601 28601 0.10669132759539934 LSRWYRRHVQI 11 Unmodified _LSRWYRRHVQI_ 0 0 0 REV__nc|ENSG00000094631|Q9UBN7-2|HDAC6 REV__nc|ENSG00000094631|Q9UBN7-2|HDAC6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 505.288143 1512.8426 -0.08844 -4.4688E-05 -1.5339 -0.00077505 -1.6223 -0.00081974 505.2874297359119 91.864 0.5803 87.939 87.581 88.161 -3.9251 -0.020907 -0.00022793 NaN 1.3296 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2317800 + 29062 14594 19455 19463 0.10669132759539934 LSRWYRRHVQI 11 Unmodified _LSRWYRRHVQI_ 0 0 0 REV__nc|ENSG00000094631|Q9UBN7-2|HDAC6 REV__nc|ENSG00000094631|Q9UBN7-2|HDAC6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 505.288143 1512.8426 -0.0086139 -4.3525E-06 -1.1232 -0.00056756 -1.1318 -0.00057191 505.2874577083767 92.034 0.34038 87.939 87.74 88.08 -4.0946 -0.020952 0.00039455 NaN 1.3296 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1764900 + 29063 14594 19455 19463 0.10669132759539934 LSSDGVWR 8 Unmodified _LSSDGVWR_ 0 0 0 ENST00000488901.5_1_1:155581342-155581721:+|nuORF;ENST00000483734.5_1_1:155580745-155584061:+|nuORF;nc|ENSG00000125459|Q9BUK6-3|MSTO1;nc|ENSG00000125459|Q9BUK6-2|MSTO1;ENSG00000125459|ENST00000245564|MSTO1 ENST00000488901.5_1_1:155581342-155581721:+|nuORF ENST00000488901.5_1_1:155581342-155581721:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2344970703125 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 131.32 1 126.68 126.18 127.18 -4.6359 0 0 0 0.2343 1 25879 25879 0.62683 0.50396 1 29064 3361 19456 19464 28602 28602 -0.006559587964375169 LSSDTSALSY 10 Unmodified _LSSDTSALSY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2666015625 2 522.248212 1042.48187 NaN NaN NaN NaN NaN NaN NaN 86.646 1 82.696 82.196 83.196 -3.9503 0 0 0 0.22576 1 16496 16496 14.838 0.25658 1 29065 3187 19457 19465 28603 28603 -0.037671541354711735 LSSDVKKSV 9 Unmodified _LSSDVKKSV_ 0 0 0 REV__tr|U7T418|U7T418_FUSNUIon-translocatingoxidoreductasecomplexsubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfAPE=3SV=1 REV__tr|U7T418|U7T418_FUSNUIon-translocatingoxidoreductasecomplexsubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7784423828125 2 481.779482 961.544411 NaN NaN NaN NaN NaN NaN NaN 149.22 1 144.49 143.99 144.99 -4.7323 0 0 0 0.19162 1 29634 29634 0.37959 0 1 + 29066 25383 19458 19466 28604 28604 0.06210036723382473 LSSEEINDY 9 Unmodified _LSSEEINDY_ 0 0 0 ENST00000371130.7_2_X:123870848-123870977:-|nuORF ENST00000371130.7_2_X:123870848-123870977:-|nuORF ENST00000371130.7_2_X:123870848-123870977:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5602111816406 3 357.160988 1068.46113 -0.33935 -0.0001212 2.2074 0.00078838 1.868 0.00066718 357.1618423120445 28.642 0.76667 26.646 26.169 26.936 -1.9962 48 21 3 0 0 0 0.73309 1 4881 4881 2.7352 0 1 2371700 29067 9151 19459 19467 28605 28605 -0.07035744515133047 LSSEQYGGKV 10 Unmodified _LSSEQYGGKV_ 0 0 0 REV__nc|ENSG00000109956|Q9P2W7-2|B3GAT1 REV__nc|ENSG00000109956|Q9P2W7-2|B3GAT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.0732727050781 3 356.517106 1066.52949 0.0032247 1.1497E-06 0.4981 0.00017758 0.50132 0.00017873 356.5172216053221 24.196 0.62564 22.662 22.434 23.06 -1.5342 48 17 4 0 0 0 0.91149 1 4006 4006 3.3196 0 1 11086000 + 29068 15183 19460 19468 28606 28606 -0.0011145514461077255 LSSFCYGGF 9 Unmodified _LSSFCYGGF_ 0 0 0 ENST00000544440.6_1_13:77661748-77662988:-|nuORF ENST00000544440.6_1_13:77661748-77662988:-|nuORF ENST00000544440.6_1_13:77661748-77662988:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2530822753906 2 490.712753 979.410954 NaN NaN NaN NaN NaN NaN NaN 135.11 1 130.21 129.71 130.71 -4.8951 0 0 0 0.23508 1 25951 25951 12.532 2.3482 1 29069 11108 19461 19469 28607 28607 -0.07957525653966968 LSSFQFSI 8 Unmodified _LSSFQFSI_ 0 0 0 nc|ENSG00000149636|Q9H410-3|DSN1;nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1 nc|ENSG00000149636|Q9H410-3|DSN1 nc|ENSG00000149636|Q9H410-3|DSN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651306152344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 115.25 1 115.25 114.75 115.75 0 0 0 0 0.21486 1 22680 22680 2.9952 0.71247 1 29070 4805 19462 19470 28608 28608 0.003546936318684857 LSSHCLLFY 9 Unmodified _LSSHCLLFY_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2581787109375 2 541.770603 1081.52665 0.24448 0.00013245 -1.6118 -0.00087321 -1.3673 -0.00074076 542.272950506557 115.16 0.39636 110.61 110.36 110.76 -4.555 11 10 2 0 0 0 0.77732 1 22131 22131 4.3292 0 1 615030 + 29071 18334 19463 19471 28609 28609 -0.010850018031305808 LSSHHQTGL 9 Unmodified _LSSHHQTGL_ 0 0 0 REV__ENST00000475283.2_1_9:114804148-114814510:-|nuORF REV__ENST00000475283.2_1_9:114804148-114814510:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2764587402344 2 490.251423 978.488293 NaN NaN NaN NaN NaN NaN NaN 108.66 1 104.34 103.84 104.84 -4.32 0 0 0 0.22251 1 21411 21411 16.942 4.4107 1 + 29072 22095 19464 19472 28610 28610 -0.0018117139344440147 LSSIPGHETF 10 Unmodified _LSSIPGHETF_ 0 0 0 ENST00000594723.1_1_19:49136676-49136928:-|nuORF;ENSG00000105516|ENST00000222122|DBP ENST00000594723.1_1_19:49136676-49136928:-|nuORF ENST00000594723.1_1_19:49136676-49136928:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7833862304688 2 544.274564 1086.53457 0.26174 0.00014246 0.11864 6.4572E-05 0.38038 0.00020703 544.2745556134892 96.146 0.53368 92.097 91.828 92.362 -4.0496 23 15 2 0 0 0 0.54036 1 18849 18849 24.021 0 1 2186700 29073 2315 19465 19473 28611 28611 -0.005231512820046191 LSSLPLHPDQP 11 Unmodified _LSSLPLHPDQP_ 0 0 0 REV__ENSG00000113211|ENST00000231136|PCDHB6 REV__ENSG00000113211|ENST00000231136|PCDHB6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3003540039062 2 602.322045 1202.62954 NaN NaN NaN NaN NaN NaN NaN 140.99 1 136.12 135.62 136.62 -4.8678 0 0 0 0.22943 1 27198 27198 8.7454 0.58988 1 + 29074 15328 19466 19474 28612 28612 0.036327821891973144 LSSLQCHK 8 Unmodified _LSSLQCHK_ 0 0 0 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2389831542969 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 98.516 1 94.383 93.883 94.883 -4.1326 0 0 0 0.21486 1 19345 19345 8.5933 0 1 29075 6574 19467 19475 28613 28613 0.003732718485252917 LSSLRKVGP 9 Unmodified _LSSLRKVGP_ 0 0 0 REV__TESK2|p.D348G|1|0.09|ENSG00000070759|chr1:45345513-45345513|T/C|missense_variant REV__TESK2|p.D348G|1|0.09|ENSG00000070759|chr1:45345513-45345513|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7377014160156 2 478.798009 955.581465 0.0115 5.5063E-06 -0.12566 -6.0166E-05 -0.11416 -5.466E-05 478.79790821194524 48.405 0.49075 45.463 45.216 45.707 -2.9421 23 13 2 0 0 0 0.56053 1 8864 8864 2.6312 0 1 1518800 + 29076 14265 19468 19476 28614 28614 0.10189753059796658 LSSMEYHCL 9 Unmodified _LSSMEYHCL_ 0 0 0 REV__ENST00000476618.5_1_2:173940647-174074648:+|nuORF REV__ENST00000476618.5_1_2:173940647-174074648:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2771606445312 2 541.735902 1081.45725 0.31893 0.00017277 -0.94129 -0.00050993 -0.62236 -0.00033715 542.2371763047914 133.61 0.62885 133.61 133.14 133.77 0 28 17 2 0 0 0 0.8204 1 26395 26395 0.52476 0 1 5987400 + 29077 22107 19469 19477 28615 28615 -0.08021828814185028 LSSNMCAALLE 11 Unmodified _LSSNMCAALLE_ 0 0 0 CASKIN1|p.L618Pfs*10|1|0.31|ENSG00000167971|chr16:2181520-2181521|-/C|frameshift_variant;CASKIN1|p.Q778Rfs*27|1|0.23|ENSG00000167971|chr16:2181036-2181036|G/-|frameshift_variant;CASKIN1|p.Q778Pfs*91|1|0.45|ENSG00000167971|chr16:2181035-2181036|-/G|frameshift_variant;ENSG00000167971|ENST00000343516|CASKIN1 CASKIN1|p.L618Pfs*10|1|0.31|ENSG00000167971|chr16:2181520-2181521|-/C|frameshift_variant CASKIN1|p.L618Pfs*10|1|0.31|ENSG00000167971|chr16:2181520-2181521|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3300170898438 2 576.275392 1150.53623 0.30324 0.00017475 -2.8452 -0.0016396 -2.5419 -0.0014649 576.7747174953932 160.79 0.10312 160.79 160.71 160.81 0 4 2 2 0 0 0 0.92792 1 32279 32279 8.7454 0.58988 1 2076100 29078 396 19470 19478 28616 28616 -0.033016015799375964 LSSPFYTKT 9 Unmodified _LSSPFYTKT_ 0 0 0 FBXW7|p.T263Nfs*24|1|0.12|ENSG00000109670|chr4:152337875-152337876|-/T|frameshift_variant;FBXW7|p.A305Sfs*13|1|0.39|ENSG00000109670|chr4:152332668-152332669|-/TGCT|frameshift_variant;FBXW7|p.Q388Tfs*5|1|0.41|ENSG00000109670|chr4:152329746-152329747|-/T|frameshift_variant;FBXW7|p.V405Ffs*10|1|0.26|ENSG00000109670|chr4:152329696-152329696|T/-|frameshift_variant;FBXW7|p.H420Qfs*13|1|0.47|ENSG00000109670|chr4:152328366-152328367|-/TGTCCCAC|frameshift_variant;FBXW7|p.V485Ffs*13|1|0.25|ENSG00000109670|chr4:152326197-152326197|C/-|frameshift_variant;FBXW7|p.N621Kfs*23|1|0.21|ENSG00000109670|chr4:152323142-152323143|-/T|frameshift_variant;FBXW7|p.S668Efs*26|1|0.23|ENSG00000109670|chr4:152323003-152323004|-/C|frameshift_variant;FBXW7|p.S668Vfs*39|5|0.32|ENSG00000109670|chr4:152323004-152323004|C/-|frameshift_variant;FBXW7|p.L660Qfs*47|1|0.44|ENSG00000109670|chr4:152323026-152323026|A/-|frameshift_variant;ENSG00000109670|ENST00000281708|FBXW7 FBXW7|p.T263Nfs*24|1|0.12|ENSG00000109670|chr4:152337875-152337876|-/T|frameshift_variant FBXW7|p.T263Nfs*24|1|0.12|ENSG00000109670|chr4:152337875-152337876|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.272216796875 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 86.635 1 82.906 82.406 83.406 -3.7289 0 0 0 0.19711 1 16566 16566 0.12781 0 1 29079 2535 19471 19479 28617 28617 0.013946343490943036 LSSQFTAIPM 10 Unmodified _LSSQFTAIPM_ 0 0 0 ENST00000605294.1_1_14:55707627-55707756:-|nuORF ENST00000605294.1_1_14:55707627-55707756:-|nuORF ENST00000605294.1_1_14:55707627-55707756:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7759399414062 2 547.781167 1093.54778 0.35199 0.00019282 0.4944 0.00027082 0.84639 0.00046364 548.2842220239991 158.19 0.21544 153.39 153.22 153.44 -4.7952 6 5 2 0 0 0 0.69553 1 31446 31446 11.64 1.5664 1 772600 29080 11733 19472 19480 28618 28618 0.004749635057123669 LSSRDYRRV 9 Unmodified _LSSRDYRRV_ 0 0 0 nc|ENSG00000146856|Q8NEM8-3|AGBL3;ENST00000476700.5_1_7:134671329-134695013:+|nuORF nc|ENSG00000146856|Q8NEM8-3|AGBL3 nc|ENSG00000146856|Q8NEM8-3|AGBL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.317626953125 2 576.317628 1150.6207 NaN NaN NaN NaN NaN NaN NaN 135.71 1 130.82 130.32 131.32 -4.8951 0 0 0 0.19679 1 26072 26072 0.40827 0 1 29081 10295 19473 19481 28619 28619 0.05141853343366165 LSSTLALGPG 10 Unmodified _LSSTLALGPG_ 0 0 0 ENST00000515158.5_1_5:179050143-179050595:-|nuORF ENST00000515158.5_1_5:179050143-179050595:-|nuORF ENST00000515158.5_1_5:179050143-179050595:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2386474609375 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 88.667 1 84.874 84.374 85.374 -3.7926 0 0 0 0.22576 1 17348 17348 14.838 0.93222 1 29082 10784 19474 19482 28620 28620 0.04662365177614447 LSSTTRATDL 10 Unmodified _LSSTTRATDL_ 0 0 0 SAFB2|p.G824Afs*8|2|0.21|ENSG00000130254|chr19:5590332-5590332|C/-|frameshift_variant;SAFB2|p.P839Lfs*16|1|0.2|ENSG00000130254|chr19:5590287-5590287|G/-|frameshift_variant;SAFB2|p.L837Cfs*18|1|0.18|ENSG00000130254|chr19:5590295-5590295|C/-|frameshift_variant;ENSG00000130254|ENST00000252542|SAFB2;SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant;SAFB|p.D823Tfs*19|1|0.2|ENSG00000160633|chr19:5667361-5667361|G/-|frameshift_variant;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB SAFB2|p.G824Afs*8|2|0.21|ENSG00000130254|chr19:5590332-5590332|C/-|frameshift_variant;SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2704467773438 2 532.782753 1063.55095 0.30282 0.00016134 0.94641 0.00050423 1.2492 0.00066557 532.7845595783825 118.31 0.48169 113.81 113.6 114.08 -4.502 21 13 2 0 0 0 0.65108 1 23293 23293 16.149 0.30192 1 1872000 29083 3595;5258 19475 19483 28621 28621 0.021719298840935153 LSSTVESY 8 Unmodified _LSSTVESY_ 0 0 0 REV__ENST00000451507.1_1_20:3869003-3869189:-|nuORF REV__ENST00000451507.1_1_20:3869003-3869189:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 885.4205322265625 1 885.420004 884.412728 0.28867 0.00025559 0.13538 0.00011987 0.42405 0.00037546 885.4200180583098 53.606 0.80999 50.518 50.178 50.988 -3.0876 65 22 4 0 0 0 0.13334 1 9964 9964 56.541 0 1 40981000 + 29084 21807 19476 19484 28622 28622 -0.034101933643796656 LSSVFYAMKQP 11 Unmodified _LSSVFYAMKQP_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 635.9500732421875 2 635.828649 1269.64274 0.75672 0.00048114 -1.0524 -0.00066914 -0.29567 -0.00018799 636.3311814435393 170.39 0.10019 165.52 165.47 165.57 -4.873 4 2 2 0 0 0 0.95337 1 33729 33729 1.1933 0 1 6046600 + 29085 19577 19478 19485 28623 28623 0.01870896976924996 LSSWSLTI 8 Unmodified _LSSWSLTI_ 0 0 0 ENST00000578240.1_1_17:8133236-8133407:-|nuORF ENST00000578240.1_1_17:8133236-8133407:-|nuORF ENST00000578240.1_1_17:8133236-8133407:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7492980957031 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 145.99 1 141.31 140.81 141.81 -4.6868 0 0 0 0.17894 1 28949 28949 32.117 1.8922 1 29086 11472 19479 19486 28624 28624 0.029309801489034726 LSSWSLTI 8 Unmodified _LSSWSLTI_ 0 0 0 ENST00000578240.1_1_17:8133236-8133407:-|nuORF ENST00000578240.1_1_17:8133236-8133407:-|nuORF ENST00000578240.1_1_17:8133236-8133407:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7501525878906 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 146.53 1 141.42 140.92 141.92 -5.1108 0 0 0 0.10184 1 28341 28341 44.407 0 1 29087 11472 19479 19486 28625 28625 0.029309801489034726 LSSYSYLVL 9 Unmodified _LSSYSYLVL_ 0 0 0 MDN1|p.D4619Y|1|0.24|ENSG00000112159|chr6:89671020-89671020|C/A|missense_variant MDN1|p.D4619Y|1|0.24|ENSG00000112159|chr6:89671020-89671020|C/A|missense_variant MDN1|p.D4619Y|1|0.24|ENSG00000112159|chr6:89671020-89671020|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2601318359375 2 522.784233 1043.55391 0.20049 0.00010481 -2.5147 -0.0013147 -2.3142 -0.0012098 522.7826915994223 156.3 0.68362 156.3 156 156.69 0 32 19 3 0 0 0 0.32599 1 31418 31418 36.044 1.1121 1 3197600 29088 12120 19480 19487 28626 28626 0.03387805008901523 LSSYYLPFP 9 Unmodified _LSSYYLPFP_ 0 0 0 ENST00000546814.1_1_12:51450084-51453211:+|nuORF ENST00000546814.1_1_12:51450084-51453211:+|nuORF ENST00000546814.1_1_12:51450084-51453211:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.779541015625 2 543.778951 1085.54335 NaN NaN NaN NaN NaN NaN NaN 149.5 1 144.38 143.88 144.88 -5.1204 0 0 0 0.19691 1 28969 28969 0.40827 0.28045 1 29089 11132 19481 19488 28627 28627 0.0039982235448405845 LSTCLFGRGI 10 Unmodified _LSTCLFGRGI_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2847900390625 2 533.789327 1065.5641 0.12355 6.5952E-05 -2.5981 -0.0013868 -2.4745 -0.0013209 533.7877571946254 161.31 0.59586 161.31 160.96 161.55 0 26 16 2 0 0 0 0.78938 1 32384 32384 21.537 3.3906 1 2809900 29090 528 19482 19489 28628 28628 0.03394089462517513 LSTDKKKQFG 10 Unmodified _LSTDKKKQFG_ 0 0 0 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3209228515625 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 150.58 1 145.38 144.88 145.88 -5.1994 0 0 0 0.22588 1 29180 29180 6.7232 0 1 29091 5034 19483 19490 28629 28629 0.06533086051786086 LSTEQNFVK 9 Unmodified _LSTEQNFVK_ 0 0 0 REV__tr|U7SSR9|U7SSR9_FUSNUMPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01550PE=4SV=1 REV__tr|U7SSR9|U7SSR9_FUSNUMPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01550PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.282958984375 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 54.084 1 51.2 50.7 51.7 -2.8837 0 0 0 0.23277 1 10313 10313 13.906 3.0821 1 + 29092 25066 19484 19491 28630 28630 0.020531352350417365 LSTGVEFSNI 10 Unmodified _LSTGVEFSNI_ 0 0 0 ENSG00000198092|ENST00000356291|TMPRSS11F ENSG00000198092|ENST00000356291|TMPRSS11F ENSG00000198092|ENST00000356291|TMPRSS11F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.268798828125 2 533.774396 1065.53424 -0.23566 -0.00012579 0.15668 8.3632E-05 -0.078977 -4.2156E-05 533.7744308979019 106.01 1.4696 101.74 100.85 102.32 -4.2638 74 41 2 0 0 0 0.75233 1 20698 20698 17.113 0 1 12814000 29093 7429 19485 19492 28631 28631 0.004094289981367183 LSTHIECGP 9 Unmodified _LSTHIECGP_ 0 0 0 REV__ENST00000378319.7_1_13:50102828-50102939:+|nuORF REV__ENST00000378319.7_1_13:50102828-50102939:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7273864746094 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 111.45 1 111.45 110.95 111.95 0 0 0 0 0.21065 1 21922 21922 20.454 5.8719 1 + 29094 21113 19486 19493 28632 28632 -0.03618738250986553 LSTKFFIFLK 10 Unmodified _LSTKFFIFLK_ 0 0 0 ENST00000488263.5_1_3:3197887-3198154:-|nuORF ENST00000488263.5_1_3:3197887-3198154:-|nuORF ENST00000488263.5_1_3:3197887-3198154:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.5680847167969 3 415.253154 1242.73763 NaN NaN NaN NaN NaN NaN NaN 114.64 1 110.09 109.59 110.59 -4.555 0 0 0 2.8426 1 22012 22012 0.26539 0.25212 1 29095 10482 19487 19494 28633 28633 0.12597198510411545 LSTLRYANQ 9 Unmodified _LSTLRYANQ_ 0 0 0 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2861938476562 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 140.1 1 140.1 139.6 140.6 0 0 0 0 0.23508 1 27875 27875 9.3831 0.78985 1 29096 3019 19488 19495 28634 28634 0.031759573291765264 LSTLYQRY 8 Unmodified _LSTLYQRY_ 0 0 0 REV__ENSG00000188738|ENST00000424728|FSIP2 REV__ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2815551757812 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 122.2 1 117.52 117.02 118.02 -4.6873 0 0 0 0.21486 1 23463 23463 12.532 0.89125 1 + 29097 19166 19489 19496 28635 28635 0.025174564432290936 LSTMSGLSISV 11 Unmodified _LSTMSGLSISV_ 0 0 0 ZBTB34|p.S187Afs*29|1|0.2|ENSG00000177125|chr9:126879965-126879965|C/-|frameshift_variant;nc|ENSG00000177125|Q8NCN2|ZBTB34;ENSG00000177125|ENST00000319119|ZBTB34 ZBTB34|p.S187Afs*29|1|0.2|ENSG00000177125|chr9:126879965-126879965|C/-|frameshift_variant ZBTB34|p.S187Afs*29|1|0.2|ENSG00000177125|chr9:126879965-126879965|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7919311523438 2 547.791732 1093.56891 0.21895 0.00011994 0.2154 0.00011799 0.43435 0.00023793 547.7917141956357 99.196 0.65858 95.064 94.679 95.338 -4.1326 44 18 3 0 0 0 0.31616 2 19432 19432;19527 60.074 8.5859 1 6327900 29098 6498 19490 19497 28636;28637 28636 0.025869288145941027 LSTNAFQAF 9 Unmodified _LSTNAFQAF_ 0 0 0 nc|ENSG00000182973|Q9H9A5-6|CNOT10;nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 499.77154541015625 2 499.750724 997.486896 0.15025 7.509E-05 -0.16301 -8.1463E-05 -0.012754 -6.3736E-06 499.7506303821976 116.42 0.83684 111.84 111.42 112.26 -4.5815 64 23 4 0 0 0 0.25976 1 22395 22395 6.4869 0.095478 1 6682500 29099 12503 19491 19498 28638 28638 -0.011948054821914411 LSTNAFQAF 9 Unmodified _LSTNAFQAF_ 0 0 0 nc|ENSG00000182973|Q9H9A5-6|CNOT10;nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 499.750724 997.486896 0.17945 8.9678E-05 -0.36707 -0.00018344 -0.18762 -9.3765E-05 499.75066019689666 112.03 0.76762 112.03 111.66 112.42 0 0.1234 -0.00011985 NaN 6.4869 48 21 3 NaN NaN NaN NaN 0 NaN NaN 0 4211800 29100 12503 19491 19498 -0.011948054821914411 LSTNAFQAF 9 Unmodified _LSTNAFQAF_ 0 0 0 nc|ENSG00000182973|Q9H9A5-6|CNOT10;nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 499.750724 997.486896 0.096766 4.8359E-05 -0.065881 -3.2924E-05 0.030885 1.5435E-05 499.75072941091065 116.43 0.83775 111.95 111.55 112.39 -4.486 0.041156 0.00018119 NaN 6.4869 64 23 3 NaN NaN NaN NaN 0 NaN NaN 0 8090500 29101 12503 19491 19498 -0.011948054821914411 LSTNAFQAF 9 Unmodified _LSTNAFQAF_ 0 0 0 nc|ENSG00000182973|Q9H9A5-6|CNOT10;nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 499.750724 997.486896 0.33897 0.0001694 -0.40732 -0.00020356 -0.068345 -3.4156E-05 499.7505451669561 116.17 1.0253 111.81 111.21 112.24 -4.3585 -0.094191 -0.00016008 NaN 6.4869 64 28 3 NaN NaN NaN NaN 0 NaN NaN 0 6517500 29102 12503 19491 19498 -0.011948054821914411 LSTNQTYFL 9 Unmodified _LSTNQTYFL_ 0 0 0 REV__ENSG00000144821|ENST00000693548|MYH15 REV__ENSG00000144821|ENST00000693548|MYH15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7789306640625 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 113.77 1 113.77 113.27 114.27 0 0 0 0 0.20628 1 22372 22372 21.747 2.4897 1 + 29103 16805 19492 19499 28639 28639 -2.2671392343909247E-05 LSTPTRCW 8 Unmodified _LSTPTRCW_ 0 0 0 REV__PROB1|p.A675Pfs*73|2|0.56|ENSG00000228672|chr5:139393066-139393066|C/-|frameshift_variant REV__PROB1|p.A675Pfs*73|2|0.56|ENSG00000228672|chr5:139393066-139393066|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7861328125 2 482.23947 962.464386 NaN NaN NaN NaN NaN NaN NaN 68.461 1 68.461 67.961 68.961 0 0 0 0 0.21452 1 13237 13237 13.508 3.434 1 + 29104 24512 19493 19500 28640 28640 -0.018347281514593305 LSTRPVGPAAL 11 Unmodified _LSTRPVGPAAL_ 0 0 0 ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2609252929688 2 541.321848 1080.62914 0.41571 0.00022504 4.014 0.0021729 4.4298 0.0023979 541.8241503842282 164.03 0.2756 159.24 159.02 159.3 -4.7898 9 7 2 0 0 0 0.83822 1 32725 32725 14.405 1.3629 1 24928000 29105 5856 19494 19501 28641 28641 0.09205407259992171 LSTSGIPHPA 10 Unmodified _LSTSGIPHPA_ 0 0 0 TCF7L1|p.P301S|1|0.38|ENSG00000152284|chr2:85305315-85305315|C/T|missense_variant TCF7L1|p.P301S|1|0.38|ENSG00000152284|chr2:85305315-85305315|C/T|missense_variant TCF7L1|p.P301S|1|0.38|ENSG00000152284|chr2:85305315-85305315|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.263916015625 2 490.263999 978.513445 0.0073845 3.6203E-06 0.13078 6.4117E-05 0.13816 6.7737E-05 490.264027526858 56.438 1.1201 56.438 55.973 57.093 0 97 31 4 0 0 0 0.372 1 10864 10864 1.0651 0 1 20526000 29106 25827 19495 19502 28642 28642 0.023328834091330464 LSTSGIPHPA 10 Unmodified _LSTSGIPHPA_ 0 0 0 TCF7L1|p.P301S|1|0.38|ENSG00000152284|chr2:85305315-85305315|C/T|missense_variant TCF7L1|p.P301S|1|0.38|ENSG00000152284|chr2:85305315-85305315|C/T|missense_variant TCF7L1|p.P301S|1|0.38|ENSG00000152284|chr2:85305315-85305315|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2642517089844 2 490.263999 978.513445 0.064146 3.1448E-05 0.10466 5.1312E-05 0.16881 8.2761E-05 490.2640316435626 59.279 1.7152 56.368 55.784 57.5 -2.9105 129 48 4 0 0 0 0.372 1 11539 11539 1.0651 0.65688 1 42586000 29107 25827 19495 19502 28643 28643 0.023328834091330464 LSTSGIPHPA 10 Unmodified _LSTSGIPHPA_ 0 0 0 TCF7L1|p.P301S|1|0.38|ENSG00000152284|chr2:85305315-85305315|C/T|missense_variant TCF7L1|p.P301S|1|0.38|ENSG00000152284|chr2:85305315-85305315|C/T|missense_variant TCF7L1|p.P301S|1|0.38|ENSG00000152284|chr2:85305315-85305315|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26397705078125 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 0.16385 2 11223 11181;11223 1.9275 0.23563 1 39769000 29108 25827 19495 19502 28644;28645 28645 0.023328834091330464 LSTSLSPLLY 10 Unmodified _LSTSLSPLLY_ 0 0 0 LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|40|3|anti-sense LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|40|3|anti-sense LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|40|3|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7760620117188 2 547.310615 1092.60668 0.13233 7.2424E-05 0.1745 9.5507E-05 0.30683 0.00016793 547.3106581038443 128.93 1.4395 124.11 123.55 124.99 -4.817 136 40 5 0 0 0 0.054771 2 24667 24667;24862 14.611 0 1 183480000 29109 12095 19496 19503 28646;28647 28646 0.06407763071729278 LSTSLSPLLY 10 Unmodified _LSTSLSPLLY_ 0 0 0 LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|40|3|anti-sense LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|40|3|anti-sense LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|40|3|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7830200195312 2 547.310615 1092.60668 0.23756 0.00013002 0.11053 6.0495E-05 0.34809 0.00019052 547.3106543181083 128.88 1.4069 124.14 123.59 125 -4.7408 149 39 5 0 0 0 0.26072 1 24955 24955 6.5879 0 1 193440000 29110 12095 19496 19503 28648 28648 0.06407763071729278 LSTSTIKTE 9 Unmodified _LSTSTIKTE_ 0 0 0 MUC16|p.P9069T|1|0.22|ENSG00000181143|chr19:8949565-8949565|G/T|missense_variant MUC16|p.P9069T|1|0.22|ENSG00000181143|chr19:8949565-8949565|G/T|missense_variant MUC16|p.P9069T|1|0.22|ENSG00000181143|chr19:8949565-8949565|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2684631347656 2 490.268947 978.523341 NaN NaN NaN NaN NaN NaN NaN 167.01 1 162.22 161.72 162.72 -4.7898 0 0 0 0.23508 1 33622 33622 10.824 0 1 29111 12176 19497 19504 28649 28649 0.03322026623857255 LSTSTPFLD 9 Unmodified _LSTSTPFLD_ 0 0 0 REV__ENSG00000109846|ENST00000650687|CRYAB REV__ENSG00000109846|ENST00000650687|CRYAB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25445556640625 2 490.75039 979.486227 -0.061588 -3.0224E-05 0.46243 0.00022694 0.40084 0.00019671 490.75041717664766 130.22 0.59299 125.44 125.18 125.77 -4.7725 42 16 3 0 0 0 0.69192 1 25082 25082 10.074 2.1638 1 1868600 + 29112 15179 19498 19505 28650 28650 -0.004336449219067617 LSTSTVLQL 9 Unmodified _LSTSTVLQL_ 0 0 0 ENST00000556772.5_1_14:73743464-73743506:-|nuORF ENST00000556772.5_1_14:73743464-73743506:-|nuORF ENST00000556772.5_1_14:73743464-73743506:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7834167480469 2 481.281857 960.549162 0.07517 3.6178E-05 -0.1762 -8.48E-05 -0.10103 -4.8622E-05 481.2816538249409 79.598 0.81738 76.088 75.659 76.476 -3.5102 58 22 3 0 0 0 0.19983 1 15535 15535 0.87518 0 1 5568500 29113 11247 19499 19506 28651 28651 0.06730920866152701 LSTTVTRFPG 10 Unmodified _LSTTVTRFPG_ 0 0 0 ENST00000509690.5_1_17:7578489-7590731:-|nuORF;ENST00000445888.6_1_17:7579872-7590731:-|nuORF ENST00000509690.5_1_17:7578489-7590731:-|nuORF ENST00000509690.5_1_17:7578489-7590731:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2004699707031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 51.449 1 48.567 48.067 49.067 -2.8824 0 0 0 0.22588 1 9774 9774 5.7834 1.2546 1 29114 9936 19500 19507 28652 28652 0.046171279889904326 LSTVIATVAS 10 Unmodified _LSTVIATVAS_ 0 0 0 ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78448486328125 2 481.281857 960.549162 0.2506 0.00012061 -0.090495 -4.3554E-05 0.16011 7.7056E-05 481.28172547753746 76.643 0.91794 76.643 76.063 76.981 0 58 25 3 0 0 0 0.51199 1 14809 14809 24.021 1.2843 1 6366300 29115 2635 19501 19508 28653 28653 0.06730920866152701 LSTVILCTL 9 Unmodified _LSTVILCTL_ 0 0 0 REV__ENST00000524544.1_1_11:80364480-80364744:-|nuORF REV__ENST00000524544.1_1_11:80364480-80364744:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78289794921875 2 481.783179 961.551804 NaN NaN NaN NaN NaN NaN NaN 129.4 1 124.58 124.08 125.08 -4.817 0 0 0 0.21065 1 24842 24842 20.454 3.5113 1 + 29116 22672 19502 19509 28654 28654 0.0694905299947095 LSTVKYEPP 9 Unmodified _LSTVKYEPP_ 0 0 0 NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENSG00000110076|ENST00000265459|NRXN2;ENST00000466324.1_1_11:64444212-64481216:-|nuORF;nc|ENSG00000110076|Q9P2S2-2|NRXN2 NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;nc|ENSG00000110076|Q9P2S2-2|NRXN2 nc|ENSG00000110076|Q9P2S2-2|NRXN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.2312927246094 3 345.19033 1032.54916 NaN NaN NaN NaN NaN NaN NaN 40.11 1 37.57 37.07 38.07 -2.5398 0 0 0 0.23508 1 7178 7178 1.0715 0 1 29117 2561;12280 19503 19510 28655 28655 0.034189208661246084 LSTVQKTH 8 Unmodified _LSTVQKTH_ 0 0 0 REV__SLC22A14|p.D49Vfs*21|1|0.04|ENSG00000144671|chr3:38306172-38306172|A/-|frameshift_variant REV__SLC22A14|p.D49Vfs*21|1|0.04|ENSG00000144671|chr3:38306172-38306172|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2243347167969 2 457.258717 912.50288 0.03872 1.7705E-05 -0.096746 -4.4238E-05 -0.058026 -2.6533E-05 457.2586888050185 82.922 0.76363 79.048 78.632 79.396 -3.8736 48 21 3 0 0 0 0.70344 1 15773 15773 18.135 8.7875 1 2619200 + 29118 24628 19504 19511 28656 28656 0.04312900754723614 LSTVQKTH 8 Unmodified _LSTVQKTH_ 0 0 0 REV__SLC22A14|p.D49Vfs*21|1|0.04|ENSG00000144671|chr3:38306172-38306172|A/-|frameshift_variant REV__SLC22A14|p.D49Vfs*21|1|0.04|ENSG00000144671|chr3:38306172-38306172|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2387390136719 2 457.258717 912.50288 -0.12488 -5.7104E-05 0.15059 6.8857E-05 0.025703 1.1753E-05 457.25878984045323 82.731 0.83796 79.032 78.551 79.389 -3.6985 49 23 3 0 0 0 0.64512 1 15848 15848 24.674 5.2349 1 2907700 + 29119 24628 19504 19511 28657 28657 0.04312900754723614 LSTVQKTH 8 Unmodified _LSTVQKTH_ 0 0 0 REV__SLC22A14|p.D49Vfs*21|1|0.04|ENSG00000144671|chr3:38306172-38306172|A/-|frameshift_variant REV__SLC22A14|p.D49Vfs*21|1|0.04|ENSG00000144671|chr3:38306172-38306172|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.258717 912.50288 -0.10261 -4.6918E-05 0.27902 0.00012758 0.17641 8.0667E-05 457.25888361960716 82.526 0.69772 78.918 78.497 79.194 -3.6079 -0.081127 0.00016327 NaN 24.674 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2486200 + 29120 24628 19504 19511 0.04312900754723614 LSTVQKTH 8 Unmodified _LSTVQKTH_ 0 0 0 REV__SLC22A14|p.D49Vfs*21|1|0.04|ENSG00000144671|chr3:38306172-38306172|A/-|frameshift_variant REV__SLC22A14|p.D49Vfs*21|1|0.04|ENSG00000144671|chr3:38306172-38306172|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 457.258717 912.50288 0.03872 1.7705E-05 -0.096746 -4.4238E-05 -0.058026 -2.6533E-05 457.2586888050185 82.922 0.76363 79.048 78.632 79.396 -3.8736 0.048472 -0.00018037 NaN 24.674 48 21 3 NaN NaN NaN NaN 0 NaN NaN 0 2619200 + 29121 24628 19504 19511 0.04312900754723614 LSTVQKTH 8 Unmodified _LSTVQKTH_ 0 0 0 REV__SLC22A14|p.D49Vfs*21|1|0.04|ENSG00000144671|chr3:38306172-38306172|A/-|frameshift_variant REV__SLC22A14|p.D49Vfs*21|1|0.04|ENSG00000144671|chr3:38306172-38306172|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 457.258717 912.50288 -0.12488 -5.7104E-05 0.15059 6.8857E-05 0.025703 1.1753E-05 457.25878984045323 82.731 0.83796 79.032 78.551 79.389 -3.6985 0.032655 4.5815E-05 NaN 24.674 49 23 3 NaN NaN NaN NaN 0 NaN NaN 0 2907700 + 29122 24628 19504 19511 0.04312900754723614 LSTYHDQV 8 Unmodified _LSTYHDQV_ 0 0 0 ENST00000355774.6_2_14:75516338-75518116:-|nuORF ENST00000355774.6_2_14:75516338-75518116:-|nuORF ENST00000355774.6_2_14:75516338-75518116:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2494201660156 2 481.732532 961.45051 0.23218 0.00011185 3.0363 0.0014627 3.2684 0.0015745 481.73419183847625 76.22 0.42259 76.22 75.887 76.31 0 23 11 3 0 0 0 0.50973 1 14816 14816 24.674 0 1 1193900 29123 8964 19505 19512 28658 28658 -0.031756823789010014 LSVAEAEQPQP 11 Unmodified _LSVAEAEQPQP_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-3|WDR81 REV__nc|ENSG00000167716|Q562E7-3|WDR81 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 584.8881225585938 2 584.79586 1167.57717 NaN NaN NaN NaN NaN NaN NaN 165.64 1 165.64 165.14 166.14 0 0 0 0 0.22943 1 33638 33638 8.7454 0.83525 1 + 29124 17961 19506 19513 28659 28659 8.199055559998669E-05 LSVAQTGGPP 10 Unmodified _LSVAQTGGPP_ 0 0 0 nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2401428222656 2 463.750724 925.486896 -0.15504 -7.19E-05 -0.083754 -3.8841E-05 -0.23879 -0.00011074 463.750661464487 61.786 1.2637 61.786 61.325 62.589 0 116 36 5 0 0 0 0.33865 3 11834 11834;11855;11906 34.932 2.6266 1 245260000 29125 12629 19507 19514 28660;28661;28662 28660 0.021171945178025453 LSVAQTGGPP 10 Unmodified _LSVAQTGGPP_ 0 0 0 nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2546081542969 2 463.750724 925.486896 0.18093 8.3907E-05 -0.4435 -0.00020567 -0.26257 -0.00012177 463.7505252073514 65.158 1.6781 61.7 61.192 62.87 -3.4581 134 47 5 0 0 0 0.33865 1 12182 12182 34.932 2.6266 1 210120000 29126 12629 19507 19514 28663 28663 0.021171945178025453 LSVAQTGGPP 10 Unmodified _LSVAQTGGPP_ 0 0 0 nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2443542480469 2 463.750724 925.486896 0.30067 0.00013944 -0.50047 -0.00023209 -0.1998 -9.2656E-05 463.7505042894462 64.922 1.6165 61.638 61.103 62.719 -3.2832 141 46 5 0 0 0 0.33865 1 12221 12221 34.932 2.6266 1 210300000 29127 12629 19507 19514 28664 28664 0.021171945178025453 LSVASAPSSP 10 Unmodified _LSVASAPSSP_ 0 0 0 REV__ENSG00000182798|ENST00000400004|MAGEB17 REV__ENSG00000182798|ENST00000400004|MAGEB17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23809814453125 2 458.242732 914.470912 0.21227 9.7273E-05 -0.080012 -3.6665E-05 0.13226 6.0608E-05 458.2426755954393 86.254 1.1587 86.254 85.824 86.982 0 47 32 2 0 0 0 0.70987 1 16929 16929 30.637 14.789 1 1511700 + 29128 18800 19508 19515 28665 28665 0.010254882809022092 LSVDPGELK 9 Unmodified _LSVDPGELK_ 0 0 0 REV__AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant REV__AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.740234375 2 479.266207 956.517862 0.16248 7.787E-05 -0.15187 -7.2785E-05 0.01061 5.0849E-06 479.26596136485404 155.67 0.7117 150.89 150.48 151.19 -4.7791 22 19 2 0 0 0 0.69192 1 30864 30864 20.454 0 1 1459400 + 29129 12987 19509 19516 28666 28666 0.03786347832044612 LSVFRSNTNI 10 Unmodified _LSVFRSNTNI_ 0 0 0 tr|U7T286|U7T286_FUSNULargeribosomalsubunitproteinuL18OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplRPE=3SV=1 tr|U7T286|U7T286_FUSNULargeribosomalsubunitproteinuL18OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplRPE=3SV=1 tr|U7T286|U7T286_FUSNULargeribosomalsubunitproteinuL18OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplRPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3165283203125 2 575.814387 1149.61422 0.012943 7.453E-06 -0.67523 -0.00038881 -0.66228 -0.00038135 576.3158370404614 111.61 0.6596 107.12 106.72 107.38 -4.4915 31 18 2 0 0 0 0.57735 1 21386 21386 20.454 2.3073 1 2502900 29130 26350 19510 19517 28667 28667 0.04539915392001603 LSVFRSNTNI 10 Unmodified _LSVFRSNTNI_ 0 0 0 tr|U7T286|U7T286_FUSNULargeribosomalsubunitproteinuL18OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplRPE=3SV=1 tr|U7T286|U7T286_FUSNULargeribosomalsubunitproteinuL18OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplRPE=3SV=1 tr|U7T286|U7T286_FUSNULargeribosomalsubunitproteinuL18OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplRPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3146362304688 2 575.814387 1149.61422 0.62152 0.00035788 -1.1278 -0.00064942 -0.50632 -0.00029154 575.8133193729882 111.28 0.55864 107.05 106.69 107.25 -4.2289 32 15 3 0 0 0 0.57735 1 21381 21381 20.454 1.1966 1 1882200 29131 26350 19510 19517 28668 28668 0.04539915392001603 LSVHQRFH 8 Unmodified _LSVHQRFH_ 0 0 0 ENSG00000167637|ENST00000618787|ZNF283 ENSG00000167637|ENST00000618787|ZNF283 ENSG00000167637|ENST00000618787|ZNF283 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 512.7479858398438 2 512.277775 1022.541 0.21247 0.00010884 -1.3149 -0.00067358 -1.1024 -0.00056474 512.2758550916428 138.59 0.14684 133.74 133.64 133.79 -4.8492 6 3 2 0 0 0 0.88646 1 26717 26717 1.7423 1.0609 1 785970 29132 5827 19511 19518 28669 28669 0.030628314600335216 LSVHQRFH 8 Unmodified _LSVHQRFH_ 0 0 0 ENSG00000167637|ENST00000618787|ZNF283 ENSG00000167637|ENST00000618787|ZNF283 ENSG00000167637|ENST00000618787|ZNF283 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 512.277775 1022.541 0.20284 0.00010391 -0.96954 -0.00049667 -0.7667 -0.00039276 512.7786143936261 133.8 0.16934 133.8 133.7 133.87 0 0.027362 5.0057E-05 NaN 1.7423 8 4 3 NaN NaN NaN NaN 0 NaN NaN 0 1181200 29133 5827 19511 19518 0.030628314600335216 LSVHVVGY 8 Unmodified _LSVHVVGY_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2286682128906 2 437.245078 872.475603 NaN NaN NaN NaN NaN NaN NaN 144.48 1 139.54 139.04 140.04 -4.9445 0 0 0 0.21486 1 27909 27909 9.3474 0.75416 1 29134 1581 19512 19519 28670 28670 0.03426417214336652 LSVITLHKLK 10 Unmodified _LSVITLHKLK_ 0 0 0 REV__ENSG00000144524|ENST00000350033|COPS7B REV__ENSG00000144524|ENST00000350033|COPS7B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.324462890625 2 576.379166 1150.74378 NaN NaN NaN NaN NaN NaN NaN 158.75 1 153.96 153.46 154.46 -4.7952 0 0 0 2.8426 1 31572 31572 0.0013812 0 1 + 29135 16786 19513 19520 28671 28671 0.17443716741900062 LSVKAQHTP 9 Unmodified _LSVKAQHTP_ 0 0 0 REV__KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant REV__KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2652587890625 2 490.779816 979.545079 -0.12898 -6.3303E-05 0.46581 0.00022861 0.33682 0.00016531 490.7798690048391 26.994 0.5164 25.072 24.709 25.226 -1.9222 18 14 2 0 0 0 0.81703 1 4434 4434 10.074 0 1 842480 + 29136 17532 19514 19521 28672 28672 0.054488761630864246 LSVLDIHGSK 10 Unmodified _LSVLDIHGSK_ 0 0 0 REV__ENST00000467423.1_1_1:19565574-19565811:-|nuORF REV__ENST00000467423.1_1_1:19565574-19565811:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5597839355469 3 356.873113 1067.59751 -0.24201 -8.6367E-05 0.46844 0.00016717 0.22643 8.0806E-05 356.87325054012405 23.078 0.58563 23.078 22.823 23.409 0 46 16 4 0 0 0 0.69673 1 3937 3937 11.518 0 1 6896100 + 29137 21979 19515 19522 28673 28673 0.06641414506043475 LSVLRATGATY 11 Unmodified _LSVLRATGATY_ 0 0 0 nc|ENSG00000124574|Q5T3U5-2|ABCC10;ENSG00000124574|ENST00000372530|ABCC10 nc|ENSG00000124574|Q5T3U5-2|ABCC10 nc|ENSG00000124574|Q5T3U5-2|ABCC10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3328247070312 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 158.9 1 154.1 153.6 154.6 -4.7952 0 0 0 0.22632 1 31602 31602 1.4074 0.1926 1 29138 3323 19516 19523 28674 28674 0.06533086051786086 LSVLSHRNII 10 Unmodified _LSVLSHRNII_ 0 0 0 nc|ENSG00000091436|Q9NYL2-2|MAP3K20;nc|ENSG00000091436|Q9NYL2-3|MAP3K20;ENST00000476618.5_1_2:173940647-174074648:+|nuORF;ENSG00000091436|ENST00000375213|MAP3K20 nc|ENSG00000091436|Q9NYL2-2|MAP3K20 nc|ENSG00000091436|Q9NYL2-2|MAP3K20 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3199462890625 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 155.19 1 149.91 149.41 150.41 -5.2854 0 0 0 0.22588 1 30100 30100 5.7319 0.43497 1 29139 12250 19517 19524 28675 28675 0.11292785042655851 LSVLVILLVIY 11 Unmodified _LSVLVILLVIY_ 0 0 0 nc|ENSG00000198739|Q86VH5-2|LRRTM3;ENSG00000198739|ENST00000361320|LRRTM3 nc|ENSG00000198739|Q86VH5-2|LRRTM3 nc|ENSG00000198739|Q86VH5-2|LRRTM3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7811889648438 2 622.91505 1243.81555 NaN NaN NaN NaN NaN NaN NaN 142.4 1 137.37 136.87 137.87 -5.0261 0 0 0 0.23634 1 27447 27447 3.2813 1.6287 1 29140 7483 19518 19525 28676 28676 0.2033921137579 LSVMSPYSY 9 Unmodified _LSVMSPYSY_ 0 0 0 REV__nc|ENSG00000130164|P01130-5|LDLR REV__nc|ENSG00000130164|P01130-5|LDLR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6993408203125 2 523.746793 1045.47903 NaN NaN NaN NaN NaN NaN NaN 94.352 1 90.361 89.861 90.861 -3.9907 0 0 0 0.23508 1 18486 18486 7.9102 1.187 1 + 29141 24033 19519 19526 28677 28677 -0.04188700793974931 LSVQIFTVPSL 11 Unmodified _LSVQIFTVPSL_ 0 0 0 ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8-2|UBR2 ENSG00000024048|ENST00000372901|UBR2 ENSG00000024048|ENST00000372901|UBR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2964477539062 2 602.352814 1202.69108 0.39079 0.00023539 -0.78115 -0.00047053 -0.39035 -0.00023513 602.3505205578115 136.46 0.20451 136.46 136.31 136.51 0 6 5 2 0 0 0 0.83822 1 27047 27047 14.405 4.2548 1 1741200 29142 1135 19520 19527 28678 28678 0.09783713888464263 LSVRWRRQRPL 11 Unmodified _LSVRWRRQRPL_ 0 0 0 ENST00000606082.5_1_2:54198066-54200871:+|nuORF ENST00000606082.5_1_2:54198066-54200871:+|nuORF ENST00000606082.5_1_2:54198066-54200871:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.7471618652344 3 489.632021 1465.87423 NaN NaN NaN NaN NaN NaN NaN 162.69 1 157.55 157.05 158.05 -5.1438 0 0 0 0.22632 1 31623 31623 0.026206 0 1 29143 11742 19521 19528 28679 28679 0.15993125513500672 LSVSKRNVY 9 Unmodified _LSVSKRNVY_ 0 0 0 ENST00000416640.2_3_22:21698217-21699360:+|nuORF ENST00000416640.2_3_22:21698217-21699360:+|nuORF ENST00000416640.2_3_22:21698217-21699360:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.282958984375 2 533.306198 1064.59784 -0.077148 -4.1143E-05 1.043 0.00055623 0.96583 0.00051508 533.3061157656242 82.41 0.96484 78.711 78.246 79.211 -3.6985 77 27 4 0 0 0 0.54354 1 15638 15638 16.942 1.0951 1 14870000 29144 9623 19522 19529 28680 28680 0.06812834225888764 LSVTLATSPA 10 Unmodified _LSVTLATSPA_ 0 0 0 BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.I2261Yfs*13|1|0.3|ENSG00000115760|chr2:32476268-32476268|A/-|frameshift_variant;BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant;BIRC6|p.M418Nfs*8|1|0.25|ENSG00000115760|chr2:32401379-32401380|-/A|frameshift_variant;BIRC6|p.I914Yfs*2|1|0.07|ENSG00000115760|chr2:32416027-32416027|A/-|frameshift_variant;BIRC6|p.A1071Lfs*23|1|0.39|ENSG00000115760|chr2:32431053-32431053|G/-|frameshift_variant;BIRC6|p.T1339Qfs*21|1|0.44|ENSG00000115760|chr2:32442131-32442131|A/-|frameshift_variant;BIRC6|p.R1406Dfs*3|1|0.35|ENSG00000115760|chr2:32442431-32442431|C/-|frameshift_variant;BIRC6|p.P1736Qfs*17|1|0.37|ENSG00000115760|chr2:32464770-32464770|C/-|frameshift_variant BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77880859375 2 480.274032 958.533512 -0.039729 -1.9081E-05 -0.054104 -2.5985E-05 -0.093833 -4.5066E-05 480.27403874747176 72.874 1.2632 72.874 72.471 73.734 0 130 35 5 0 0 0 0.32088 1 14228 14228 36.127 1.7253 1 214700000 29145 319 19523 19530 28681 28681 0.052586343490816034 LSVVPPTVLR 10 Unmodified _LSVVPPTVLR_ 0 0 0 ENST00000495366.5_1_3:8675888-8681636:-|nuORF ENST00000495366.5_1_3:8675888-8681636:-|nuORF ENST00000495366.5_1_3:8675888-8681636:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2739868164062 2 540.842416 1079.67028 0.15978 8.6414E-05 -1.8633 -0.0010077 -1.7035 -0.00092133 541.3422674816677 141.28 0.17584 136.29 136.17 136.34 -4.9877 5 4 2 0 0 0 0.90598 1 27201 27201 5.7319 1.4026 1 1659600 29146 10567 19524 19531 28682 28682 0.133631682994519 LSVVRIFE 8 Unmodified _LSVVRIFE_ 0 0 0 REV__ENST00000482826.1_1_2:55795287-55800821:-|nuORF REV__ENST00000482826.1_1_2:55795287-55800821:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78851318359375 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 154.25 1 154.25 153.75 154.75 0 0 0 0 0.21486 1 30917 30917 7.9102 0 1 + 29147 22196 19525 19532 28683 28683 0.07734948311224343 LSVVSAAGAGP 11 Unmodified _LSVVSAAGAGP_ 0 0 0 REV__ENSG00000130304|ENST00000252595|SLC27A1 REV__ENSG00000130304|ENST00000252595|SLC27A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2528381347656 2 464.758549 927.502546 0.24366 0.00011324 -0.5705 -0.00026514 -0.32684 -0.0001519 464.7583061701436 28.549 0.41605 26.794 26.565 26.981 -1.7552 19 11 2 0 0 0 0.83635 1 4776 4776 13.042 0 1 868180 + 29148 15994 19526 19533 28684 28684 0.035894810348509054 LSVVVSLSSA 10 Unmodified _LSVVVSLSSA_ 0 0 0 REV__ENSG00000145649|ENST00000274306|GZMA REV__ENSG00000145649|ENST00000274306|GZMA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7834777832031 2 481.281857 960.549162 -0.023724 -1.1418E-05 -0.24255 -0.00011674 -0.26627 -0.00012815 481.28166765028675 79.91 0.92024 76.105 75.646 76.566 -3.8048 59 25 3 0 0 0 0.37059 1 15108 15108 32.786 5.902 1 5163900 + 29149 16846 19527 19534 28685 28685 0.06730920866141332 LSVWMNYIGY 10 Unmodified _LSVWMNYIGY_ 0 0 0 REV__ENSG00000074803|ENST00000380993|SLC12A1 REV__ENSG00000074803|ENST00000380993|SLC12A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.781494140625 2 623.302267 1244.58998 0.37664 0.00023476 0.21815 0.00013597 0.59479 0.00037073 623.3022052281519 130.23 0.62775 125.46 125.11 125.74 -4.7725 35 17 3 0 0 0 0.72607 1 25062 25062 31.268 5.0002 1 3826900 + 29150 14320 19528 19535 28686 28686 -0.02253061085889385 LSWELIKRI 9 Unmodified _LSWELIKRI_ 0 0 0 ENST00000429810.2_1_16:74372556-74378726:-|nuORF ENST00000429810.2_1_16:74372556-74378726:-|nuORF ENST00000429810.2_1_16:74372556-74378726:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7084655761719 3 386.572886 1156.69683 -0.87071 -0.00033659 0.99048 0.00038289 0.11977 4.63E-05 386.9075530448456 12.206 1.0686 11.196 11.069 12.137 -1.0098 46 30 3 0 0 0 0.81734 1 1723 1723 0.96228 0.18574 1 1563700 29151 9766 19529 19536 28687 28687 0.12474857190818511 LSWELIKRI 9 Unmodified _LSWELIKRI_ 0 0 0 ENST00000429810.2_1_16:74372556-74378726:-|nuORF ENST00000429810.2_1_16:74372556-74378726:-|nuORF ENST00000429810.2_1_16:74372556-74378726:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 386.572886 1156.69683 -0.67858 -0.00026232 1.1915 0.00046059 0.51289 0.00019827 386.9075873452777 12.257 1.4884 11.128 10.834 12.323 -1.1293 -0.033967 0.00010783 NaN 0.96228 69 42 3 NaN NaN NaN NaN 0 NaN NaN 0 4046600 29152 9766 19529 19536 0.12474857190818511 LSWITQKLY 9 Unmodified _LSWITQKLY_ 0 0 0 REV__POM121L2|p.R103Q|1|0.06|ENSG00000158553|chr6:27311863-27311863|C/T|missense_variant REV__POM121L2|p.R103Q|1|0.06|ENSG00000158553|chr6:27311863-27311863|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3281860351562 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 142.35 1 137.32 136.82 137.82 -5.0261 0 0 0 0.19656 1 27436 27436 0.073264 0 1 + 29153 24494 19530 19537 28688 28688 0.06935175545504535 LSWLDRYST 9 Unmodified _LSWLDRYST_ 0 0 0 REV__ENSG00000099625|ENST00000650044|CBARP REV__ENSG00000099625|ENST00000650044|CBARP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2131042480469 3 380.860984 1139.56112 -0.22 -8.3788E-05 0.41289 0.00015725 0.19289 7.3464E-05 380.8610234239329 77.946 0.92941 74.483 74.146 75.076 -3.4633 46 25 2 0 0 0 0.6226 1 15303 15303 0.0033805 0 1 2338900 + 29154 14641 19531 19538 28689 28689 -0.0030746239067411807 LSWLLRVG 8 Unmodified _LSWLLRVG_ 0 0 0 REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2 REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.28955078125 3 315.195639 942.565087 NaN NaN NaN NaN NaN NaN NaN 6.2789 1 5.6527 5.1527 6.1527 -0.62626 0 0 0 0.21486 1 448 448 0.45834 0 1 + 29155 18078 19532 19539 28690 28690 0.0915067189371257 LSWLPDNSDAE 11 Unmodified _LSWLPDNSDAE_ 0 0 0 ENSG00000104804|ENST00000221399|TULP2 ENSG00000104804|ENST00000221399|TULP2 ENSG00000104804|ENST00000221399|TULP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 623.7830810546875 2 623.78295 1245.55135 NaN NaN NaN NaN NaN NaN NaN 169.02 1 164.14 163.64 164.64 -4.873 0 0 0 0.23379 1 33362 33362 5.2969 0 1 29156 2254 19533 19540 28691 28691 -0.061606951866906456 LSWLVWDY 8 Unmodified _LSWLVWDY_ 0 0 0 REV__MCPH1|p.P771Qfs*8|1|0.21|ENSG00000147316|chr8:6621546-6621546|C/-|frameshift_variant REV__MCPH1|p.P771Qfs*8|1|0.21|ENSG00000147316|chr8:6621546-6621546|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2647094726562 2 541.271293 1080.52803 0.18574 0.00010054 4.4233 0.0023942 4.609 0.0024947 541.2743656117113 147.03 0.27856 141.92 141.68 141.96 -5.1108 9 7 2 0 0 0 0.98792 1 28402 28402 5.2307 3.9011 1 8023400 + 29157 16931 19534 19541 28692 28692 -0.00901044442730381 LSWRFFFFFFF 11 Unmodified _LSWRFFFFFFF_ 0 0 0 REV__nc|ENSG00000137090|Q9Y5R6-3|DMRT1 REV__nc|ENSG00000137090|Q9Y5R6-3|DMRT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 796.0489501953125 2 795.900266 1589.78598 NaN NaN NaN NaN NaN NaN NaN 171.27 1 166.36 165.86 166.86 -4.9149 0 0 0 0.23698 1 33903 33903 2.7352 1.6637 1 + 29158 24055 19535 19542 28693 28693 0.014676921502768892 LSWRPPQY 8 Unmodified _LSWRPPQY_ 0 0 0 REV__TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant REV__TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6856079101562 2 523.774534 1045.53451 NaN NaN NaN NaN NaN NaN NaN 23.33 1 23.33 22.83 23.83 0 0 0 0 0.21486 1 3977 3977 9.3474 0 1 + 29159 25501 19536 19543 28694 28694 0.013568935086595957 LSWSVQTP 8 Unmodified _LSWSVQTP_ 0 0 0 REV__ENST00000447375.1_1_X:153063080-153063885:+|nuORF REV__ENST00000447375.1_1_X:153063080-153063885:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24285888671875 2 459.239993 916.465432 -0.019933 -9.1543E-06 -0.080415 -3.693E-05 -0.10035 -4.6084E-05 459.2399221355482 49.715 1.1352 46.716 46.067 47.202 -2.999 124 32 5 0 0 0 0.58432 1 9057 9057 23.148 3.8914 1 34974000 + 29160 21768 19537 19544 28695 28695 0.0038580948910293955 LSWVIPHKS 9 Unmodified _LSWVIPHKS_ 0 0 0 ENST00000538886.5_1_17:73233840-73234041:-|nuORF ENST00000538886.5_1_17:73233840-73234041:-|nuORF ENST00000538886.5_1_17:73233840-73234041:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.163330078125 3 356.206315 1065.59712 NaN NaN NaN NaN NaN NaN NaN 92.301 1 88.376 87.876 88.876 -3.9251 0 0 0 0.23508 1 18075 18075 0.86438 0 1 29161 11052 19538 19545 28696 28696 0.06694039576836985 LSWYHTAG 8 Unmodified _LSWYHTAG_ 0 0 0 REV__nc|ENSG00000054523|O60333-2|KIF1B REV__nc|ENSG00000054523|O60333-2|KIF1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.1439514160156 3 312.152099 933.434466 NaN NaN NaN NaN NaN NaN NaN 88.064 1 84.271 83.771 84.771 -3.7926 0 0 0 0.21486 1 17223 17223 1.4819 0.15237 1 + 29162 14104 19539 19546 28697 28697 -0.03491343825146487 LSYDLHCCGA 10 Unmodified _LSYDLHCCGA_ 0 0 0 ENST00000433871.5_1_3:10059556-10065317:-|nuORF;nc|ENSG00000187288|Q96AQ7-2|CIDEC;ENSG00000187288|ENST00000336832|CIDEC;nc|ENSG00000187288|Q96AQ7-4|CIDEC ENST00000433871.5_1_3:10059556-10065317:-|nuORF ENST00000433871.5_1_3:10059556-10065317:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2603759765625 2 541.225702 1080.43685 NaN NaN NaN NaN NaN NaN NaN 121.78 1 117.09 116.59 117.59 -4.6873 0 0 0 0.22588 1 23378 23378 10.074 2.1638 1 29163 9816 19540 19547 28698 28698 -0.10014999473992248 LSYDQYVSMP 10 Unmodified _LSYDQYVSMP_ 0 0 0 REV__ENSG00000105131|ENST00000221730|EPHX3 REV__ENSG00000105131|ENST00000221730|EPHX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.275390625 2 601.773539 1201.53253 0.58021 0.00034916 -3.4852 -0.0020973 -2.905 -0.0017481 601.77077112673 166.98 0.17574 162.09 161.94 162.12 -4.8916 7 4 2 0 0 0 0.44731 1 32769 32769 27.629 2.2295 1 12656000 + 29164 14962 19541 19548 28699 28699 -0.06017948082126168 LSYFEQNAF 9 Unmodified _LSYFEQNAF_ 0 0 0 REV__nc|ENSG00000124019|Q9H5Z6-2|FAM124B REV__nc|ENSG00000124019|Q9H5Z6-2|FAM124B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 373.3217468261719 3 373.509952 1117.50803 -0.23469 -8.7657E-05 0.13615 5.0852E-05 -0.098538 -3.6805E-05 373.50987412307865 93.568 0.58395 89.577 89.243 89.827 -3.9907 45 16 3 0 0 0 0.87497 1 18333 18333 2.4985 1.169 1 4823100 + 29165 15747 19542 19549 28700 28700 -0.04602840173333789 LSYFEQNAF 9 Unmodified _LSYFEQNAF_ 0 0 0 REV__nc|ENSG00000124019|Q9H5Z6-2|FAM124B REV__nc|ENSG00000124019|Q9H5Z6-2|FAM124B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 373.509952 1117.50803 -0.62357 -0.00023291 0.43473 0.00016237 -0.18884 -7.0535E-05 373.50996759383764 93.462 0.72932 89.618 89.158 89.887 -3.844 0.037382 0.00016064 NaN 2.4985 49 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5567400 + 29166 15747 19542 19549 -0.04602840173333789 LSYHRLVTY 9 Unmodified _LSYHRLVTY_ 0 0 0 REV__ENST00000418089.5_1_1:183525063-183525231:-|nuORF REV__ENST00000418089.5_1_1:183525063-183525231:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3377075195312 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 159.56 1 154.28 153.78 154.78 -5.2748 0 0 0 0.22621 1 30970 30970 15.847 1.9411 1 + 29167 21480 19543 19550 28701 28701 0.044211207429498245 LSYNNEDSFI 10 Unmodified _LSYNNEDSFI_ 0 0 0 REV__ENST00000460587.1_1_9:135979935-135983404:-|nuORF REV__ENST00000460587.1_1_9:135979935-135983404:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.27587890625 2 601.272218 1200.52988 0.10383 6.2433E-05 0.12362 7.4331E-05 0.22746 0.00013676 601.2723489220077 41.868 1.538 39.262 38.875 40.413 -2.606 139 43 7 0 0 0 0.6817 1 7619 7619 13.042 0.80181 1 216110000 + 29168 17410 19544 19551 28702 28702 -0.0623608021542168 LSYRDLLV 8 Unmodified _LSYRDLLV_ 0 0 0 ENST00000469937.2_1_7:46729000-46799342:-|nuORF ENST00000469937.2_1_7:46729000-46799342:-|nuORF ENST00000469937.2_1_7:46729000-46799342:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2694396972656 2 489.784567 977.554582 -0.067047 -3.2839E-05 -0.1356 -6.6413E-05 -0.20264 -9.9252E-05 489.78448029873067 130.81 0.48068 126.03 125.77 126.25 -4.7725 19 13 2 0 0 0 8448 1 25207 25207 0.68139 0 1 909450 29169 10190 19545 19552 28703 28703 0.06490644448615512 LSYRVVFPL 9 Unmodified _LSYRVVFPL_ 0 0 0 nc|ENSG00000109189|P62068-2|USP46;ENST00000514536.5_1_4:53464769-53497293:-|nuORF;nc|ENSG00000109189|P62068-4|USP46;nc|ENSG00000109189|P62068-3|USP46;ENSG00000109189|ENST00000441222|USP46;ENSG00000152484|ENST00000282344|USP12 nc|ENSG00000109189|P62068-2|USP46 nc|ENSG00000109189|P62068-2|USP46 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7686157226562 2 547.32386 1092.63317 0.38543 0.00021095 1.6594 0.00090822 2.0448 0.0011192 547.3250613256304 65.864 0.17348 62.581 62.441 62.615 -3.2832 6 4 2 0 0 0 0.8204 1 12367 12367 8.5933 0 1 444050 29170 2522 19546 19553 28704 28704 0.09055496753717307 LSYTQSLRR 9 Unmodified _LSYTQSLRR_ 0 0 0 nc|ENSG00000088305|Q9UBC3-7|DNMT3B nc|ENSG00000088305|Q9UBC3-7|DNMT3B nc|ENSG00000088305|Q9UBC3-7|DNMT3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.1016845703125 3 375.212128 1122.61456 -1.2008 -0.00045056 0.63465 0.00023813 -0.56615 -0.00021243 375.21235426031535 22.802 0.27168 21.014 20.885 21.156 -1.7886 10 7 2 0 0 0 0.88284 1 3621 3621 0.96228 0 1 282880 29171 12244 19547 19554 28705 28705 0.05815335111856257 LSYYGETKEN 10 Unmodified _LSYYGETKEN_ 0 0 0 REV__SPAG17|p.D1620Y|1|0.17|ENSG00000155761|chr1:117996662-117996662|C/A|missense_variant REV__SPAG17|p.D1620Y|1|0.17|ENSG00000155761|chr1:117996662-117996662|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2797241210938 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 45.193 1 42.326 41.826 42.826 -2.8666 0 0 0 0.22588 1 8198 8198 10.074 2.465 1 + 29172 24725 19548 19555 28706 28706 -0.04763793698361951 LSYYYKRREEY 11 Unmodified _LSYYYKRREEY_ 0 0 0 REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3871459960938 2 785.388448 1568.76234 NaN NaN NaN NaN NaN NaN NaN 152.74 1 152.74 152.24 153.24 0 0 0 0 0.23698 1 30598 30598 1.3295 0 1 + 29173 24943 19549 19556 28707 28707 0.000711818551963006 LSYYYKRREEY 11 Unmodified _LSYYYKRREEY_ 0 0 0 REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3858642578125 2 785.388448 1568.76234 NaN NaN NaN NaN NaN NaN NaN 146.58 1 141.58 141.08 142.08 -5 0 0 0 0.23698 1 28366 28366 2.2828 0.95324 1 + 29174 24943 19549 19556 28708 28708 0.000711818551963006 LSYYYKRREEY 11 Unmodified _LSYYYKRREEY_ 0 0 0 REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6990966796875 3 523.928057 1568.76234 0.33761 0.00017688 3.931 0.0020596 4.2686 0.0022365 524.2636880223516 142.78 0.21188 137.88 137.81 138.02 -4.8982 8 5 2 0 0 0 0.96219 1 27542 27542 0.36667 0.28332 1 2197000 + 29175 24943 19549 19556 28709 28709 0.000711818551963006 LTAAIEAAN 9 Unmodified _LTAAIEAAN_ 0 0 0 DLGAP1|p.A608T|1|0.12|ENSG00000170579|chr18:3582018-3582018|C/T|missense_variant;nc|ENSG00000170579|O14490-3|DLGAP1;nc|ENSG00000170579|O14490-5|DLGAP1;nc|ENSG00000170579|O14490-2|DLGAP1;nc|ENSG00000170579|O14490-4|DLGAP1;nc|ENSG00000170579|O14490-6|DLGAP1;nc|ENSG00000170579|O14490-7|DLGAP1;ENSG00000170579|ENST00000315677|DLGAP1 DLGAP1|p.A608T|1|0.12|ENSG00000170579|chr18:3582018-3582018|C/T|missense_variant DLGAP1|p.A608T|1|0.12|ENSG00000170579|chr18:3582018-3582018|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2362976074219 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 61.575 1 61.575 61.075 62.075 0 0 0 0 0.21065 1 11810 11810 20.454 0 1 29176 846 19550 19557 28710 28710 0.019015056264606756 LTAARNACRA 10 Unmodified _LTAARNACRA_ 0 0 0 ENST00000512024.5_1_5:893053-908577:+|nuORF;ENSG00000071539|ENST00000166345|TRIP13 ENST00000512024.5_1_5:893053-908577:+|nuORF ENST00000512024.5_1_5:893053-908577:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.689453125 2 523.779825 1045.5451 NaN NaN NaN NaN NaN NaN NaN 115.28 1 115.28 114.78 115.78 0 0 0 0 2.8426 1 22686 22686 0.20733 0 1 29177 1449 19551 19558 28711 28711 0.024145528914232273 LTAASVLRIQ 10 Unmodified _LTAASVLRIQ_ 0 0 0 ENSG00000119574|ENST00000594051|ZBTB45 ENSG00000119574|ENST00000594051|ZBTB45 ENSG00000119574|ENST00000594051|ZBTB45 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.51544189453125 3 357.888874 1070.64479 0.14076 5.0375E-05 -0.54522 -0.00019513 -0.40446 -0.00014475 357.8887392916564 78.536 2.1902 78.536 77.567 79.758 0 108 62 4 0 0 0 1.1284 1 15203 15203 0.043787 0.040407 1 13099000 29178 3086 19552 19559 28712 28712 0.11229693777045213 LTALGGINAS 10 Unmodified _LTALGGINAS_ 0 0 0 REV__tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1 REV__tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2336120605469 2 458.758549 915.502546 -0.18297 -8.3939E-05 0.46001 0.00021104 0.27704 0.0001271 458.7590004152255 34.034 0.2438 31.717 31.596 31.84 -2.3175 10 6 2 0 0 0 0.82238 1 6221 6221 12.241 0 1 320270 + 29179 25275 19553 19560 28713 28713 0.04141481034844219 LTAMEPHLET 10 Unmodified _LTAMEPHLET_ 0 0 0 REV__tr|U7SM92|U7SM92_FUSNU3-keto-5-aminohexanoatecleavageenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01869PE=4SV=1 REV__tr|U7SM92|U7SM92_FUSNU3-keto-5-aminohexanoatecleavageenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01869PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2104797363281 3 381.190113 1140.54851 NaN NaN NaN NaN NaN NaN NaN 76.173 1 76.173 75.673 76.673 0 0 0 0 2.8426 1 14802 14802 0.26539 0.2216 1 + 29180 24960 19554 19561 28714 28714 -0.016142418452318452 LTANTTKGIY 10 Unmodified _LTANTTKGIY_ 0 0 0 ENSG00000113249|ENST00000523175|HAVCR1 ENSG00000113249|ENST00000523175|HAVCR1 ENSG00000113249|ENST00000523175|HAVCR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2755737304688 2 541.298039 1080.58152 0.38861 0.00021036 -0.095323 -5.1598E-05 0.29329 0.00015876 541.2980463088469 123.77 0.77692 119.19 118.74 119.52 -4.5757 43 21 3 0 0 0 0.34654 1 24424 24424 34.402 1.616 1 3730000 29181 2730 19555 19562 28715 28715 0.04445708269145143 LTANTTKGIY 10 Unmodified _LTANTTKGIY_ 0 0 0 ENSG00000113249|ENST00000523175|HAVCR1 ENSG00000113249|ENST00000523175|HAVCR1 ENSG00000113249|ENST00000523175|HAVCR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2787475585938 2 541.298039 1080.58152 0.48968 0.00026506 0.11934 6.4599E-05 0.60902 0.00032966 541.2979888305043 124.02 0.6382 119.29 118.85 119.49 -4.731 32 17 2 0 0 0 0.34654 1 23819 23819 34.402 1.616 1 2973700 29182 2730 19555 19562 28716 28716 0.04445708269145143 LTARSLDKLY 10 Unmodified _LTARSLDKLY_ 0 0 0 HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant;nc|ENSG00000172987|Q8WWQ2-2|HPSE2;ENSG00000172987|ENST00000370552|HPSE2 HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.268310546875 2 590.340238 1178.66592 NaN NaN NaN NaN NaN NaN NaN 116.45 1 111.86 111.36 112.36 -4.5815 0 0 0 0.22588 1 22346 22346 8.7454 2.5396 1 29183 6257 19556 19563 28717 28717 0.08373659085896179 LTASSVPSAP 10 Unmodified _LTASSVPSAP_ 0 0 0 ENST00000504366.5_1_5:140057253-140057307:-|nuORF ENST00000504366.5_1_5:140057253-140057307:-|nuORF ENST00000504366.5_1_5:140057253-140057307:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25042724609375 2 465.250557 928.486562 -0.047027 -2.1879E-05 0.078846 3.6683E-05 0.031819 1.4804E-05 465.2505542890306 33.402 0.48797 31.085 30.764 31.252 -2.3175 20 13 2 0 0 0 0.29353 1 6115 6115 37.974 5.6685 1 731790 29184 10653 19557 19564 28718 28718 0.01945774797957256 LTASSVPSAP 10 Unmodified _LTASSVPSAP_ 0 0 0 ENST00000504366.5_1_5:140057253-140057307:-|nuORF ENST00000504366.5_1_5:140057253-140057307:-|nuORF ENST00000504366.5_1_5:140057253-140057307:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2393798828125 2 465.250557 928.486562 0.19027 8.8523E-05 0.13412 6.2398E-05 0.32439 0.00015092 465.2504913608707 33.278 0.49203 31.131 30.865 31.357 -2.1468 21 13 2 0 0 0 0.37929 1 5815 5815 30.637 11.38 1 910560 29185 10653 19557 19564 28719 28719 0.01945774797957256 LTATKHHGTV 10 Unmodified _LTATKHHGTV_ 0 0 0 ENSG00000152104|ENST00000366956|PTPN14;PTPN14|p.M845Rfs*2|1|0.04|ENSG00000152104|chr1:214383321-214383322|-/TC|frameshift_variant ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.278076171875 2 532.795998 1063.57744 0.4508 0.00024018 -0.57663 -0.00030723 -0.12583 -6.7044E-05 532.7955891228833 47.302 0.52493 47.302 46.98 47.505 0 24 14 2 0 0 0 0.57807 1 8907 8907 20.415 0 1 1520300 29186 4902 19558 19565 28720 28720 0.048196635660815446 LTCCCFCCCCC 11 Unmodified _LTCCCFCCCCC_ 0 0 0 ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2846069335938 2 602.649375 1203.2842 NaN NaN NaN NaN NaN NaN NaN 76.595 1 73.18 72.68 73.68 -3.4151 0 0 0 0.23698 1 14949 14949 0.30703 0.30703 1 29187 5463 19559 19566 28721 28721 -0.3093138511644611 LTCFISPRRDW 11 Unmodified _LTCFISPRRDW_ 0 0 0 ENST00000264409.4_1_4:84465752-84502831:+|nuORF ENST00000264409.4_1_4:84465752-84502831:+|nuORF ENST00000264409.4_1_4:84465752-84502831:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2414855957031 3 465.23969 1392.69724 NaN NaN NaN NaN NaN NaN NaN 64.746 1 61.288 60.788 61.788 -3.4581 0 0 0 0.22632 1 12106 12106 0.026206 0 1 29188 8338 19560 19567 28722 28722 0.01659908848341729 LTDADAMKY 9 Oxidation (M) _LTDADAM(Oxidation (M))KY_ LTDADAM(1)KY LTDADAM(58)KY 0 0 1 nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A nc|ENSG00000152234|P25705-2|ATP5F1A nc|ENSG00000152234|P25705-2|ATP5F1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.270263671875 2 522.239332 1042.46411 0.22141 0.00011563 -0.29063 -0.00015178 -0.069217 -3.6148E-05 522.7406223632721 30.894 0.69255 30.894 30.66 31.353 0 58 19 4 0 0 0 0.19141 1 5608 5608 57.722 15.882 1 6294900 29189 4912 19561 19568 28723 28723 77 -0.055421926619601436 LTDADAMKY 9 Oxidation (M) _LTDADAM(Oxidation (M))KY_ LTDADAM(1)KY LTDADAM(44)KY 0 0 1 nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A nc|ENSG00000152234|P25705-2|ATP5F1A nc|ENSG00000152234|P25705-2|ATP5F1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2711181640625 2 522.239332 1042.46411 NaN NaN NaN NaN NaN NaN NaN 33.624 1 31.307 30.807 31.807 -2.3175 0 0 0 0.055797 1 6153 6153 43.982 42.24 1 29190 4912 19561 19568 28724 28724 77 -0.055421926619601436 LTDADAMKY 9 Oxidation (M) _LTDADAM(Oxidation (M))KY_ LTDADAM(1)KY LTDADAM(48)KY 0 0 1 nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A nc|ENSG00000152234|P25705-2|ATP5F1A nc|ENSG00000152234|P25705-2|ATP5F1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2711181640625 2 522.239332 1042.46411 NaN NaN NaN NaN NaN NaN NaN 33.647 1 31.329 30.829 31.829 -2.3175 0 0 0 0.060013 1 6156 6156 47.594 14.809 1 29191 4912 19561 19568 28725 28725 77 -0.055421926619601436 LTDADAMKY 9 Oxidation (M) _LTDADAM(Oxidation (M))KY_ LTDADAM(1)KY LTDADAM(42)KY 0 0 1 nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A nc|ENSG00000152234|P25705-2|ATP5F1A nc|ENSG00000152234|P25705-2|ATP5F1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.271484375 2 522.239332 1042.46411 NaN NaN NaN NaN NaN NaN NaN 33.574 1 31.427 30.927 31.927 -2.1468 0 0 0 0.080616 1 5859 5859 41.956 14.327 1 29192 4912 19561 19568 28726 28726 77 -0.055421926619601436 LTDADAMKY 9 Unmodified _LTDADAMKY_ 0 0 0 nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A nc|ENSG00000152234|P25705-2|ATP5F1A nc|ENSG00000152234|P25705-2|ATP5F1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 513.738037109375 2 514.241875 1026.4692 -0.12329 -6.3401E-05 0.010929 5.6203E-06 -0.11236 -5.7781E-05 514.2418404242037 61.424 0.58612 58.463 58.172 58.758 -2.9614 29 16 2 0 0 0 0.72864 1 11889 11889 7.2892 0 1 10450000 29193 4912 19561 19569 28727 28727 -0.042978887993513126 LTDCEYEI 8 Carbamidomethyl (C) _LTDC(Carbamidomethyl (C))EYEI_ LTDC(1)EYEI LTDC(94)EYEI 0 1 0 REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1 REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2820434570312 2 521.723515 1041.43248 0.34886 0.00018201 -0.44207 -0.00023064 -0.093204 -4.8626E-05 521.7233635048083 98.349 0.97374 98.349 97.949 98.922 0 74 27 4 0 0 0 0.11963 1 19272 19272 93.883 41.615 1 13352000 + 29194 25340 19562 19570 28728 28728 25 -0.0865818541592489 LTDCEYEI 8 Carbamidomethyl (C) _LTDC(Carbamidomethyl (C))EYEI_ LTDC(1)EYEI LTDC(82)EYEI 0 1 0 REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1 REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.277587890625 2 521.723515 1041.43248 -0.29025 -0.00015143 0.068661 3.5822E-05 -0.22159 -0.00011561 521.7236402432949 102.85 0.90711 98.666 98.236 99.143 -4.1861 72 25 4 0 0 0 0.15863 1 20241 20241 81.864 7.4677 1 13005000 + 29195 25340 19562 19570 28729 28729 25 -0.0865818541592489 LTDCEYEI 8 Carbamidomethyl (C) _LTDC(Carbamidomethyl (C))EYEI_ LTDC(1)EYEI LTDC(64)EYEI 0 1 0 REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1 REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2672729492188 2 521.723515 1041.43248 -0.45156 -0.00023559 0.31861 0.00016623 -0.13294 -6.936E-05 521.7237549429576 102.96 0.87614 98.64 98.185 99.061 -4.3208 70 24 4 0 0 0 0.26367 1 19702 19702 63.563 7.0216 1 12008000 + 29196 25340 19562 19570 28730 28730 25 -0.0865818541592489 LTDCEYEI 8 Carbamidomethyl (C) _LTDC(Carbamidomethyl (C))EYEI_ LTDC(1)EYEI LTDC(82)EYEI 0 1 0 REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1 REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2671508789062 2 521.723515 1041.43248 0.59569 0.00031079 -0.53601 -0.00027965 0.059683 3.1138E-05 521.7232689710785 102.63 0.88422 98.607 98.217 99.102 -4.0212 65 24 4 0 0 0 0.11963 1 19703 19703 81.864 7.4677 1 10419000 + 29197 25340 19562 19570 28731 28731 25 -0.0865818541592489 LTDDKLSQY 9 Unmodified _LTDDKLSQY_ 0 0 0 ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2781372070312 2 541.771854 1081.52915 0.37792 0.00020475 -0.41643 -0.00022561 -0.038516 -2.0867E-05 541.7715785639867 52.487 0.6757 52.487 52.145 52.82 0 52 18 4 0 0 0 2.1842E-10 1 9966 9966 171.46 88.935 1 47238000 29198 3194 19563 19571 28732 28732 -0.008348748644721127 LTDDKLSQY 9 Unmodified _LTDDKLSQY_ 0 0 0 ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2847290039062 2 541.771854 1081.52915 0.10929 5.9213E-05 -0.14399 -7.8012E-05 -0.0347 -1.88E-05 541.7717195414654 55.805 0.63009 52.616 52.251 52.881 -3.1895 52 17 4 0 0 0 2.1842E-10 1 10321 10321 171.46 88.935 1 51416000 29199 3194 19563 19571 28733 28733 -0.008348748644721127 LTDDKLSQY 9 Unmodified _LTDDKLSQY_ 0 0 0 ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.771854 1081.52915 0.029308 1.5878E-05 -0.1082 -5.8619E-05 -0.078891 -4.2741E-05 541.7717600412227 55.472 0.55613 52.588 52.247 52.803 -2.8837 0.0073086 9.1325E-05 NaN 171.46 51 15 4 NaN NaN NaN NaN 0 NaN NaN 0 55461000 29200 3194 19563 19571 -0.008348748644721127 LTDEECRLII 10 Unmodified _LTDEECRLII_ 0 0 0 nc|ENSG00000178467|Q9NXG6-2|P4HTM;ENSG00000178467|ENST00000383729|P4HTM;ENST00000472301.5_1_3:49027419-49042675:+|nuORF;nc|ENSG00000178467|Q9NXG6-3|P4HTM;ENST00000484115.5_1_3:49028265-49040202:+|nuORF;ENST00000485210.1_1_3:49038767-49040202:+|nuORF nc|ENSG00000178467|Q9NXG6-2|P4HTM nc|ENSG00000178467|Q9NXG6-2|P4HTM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2847900390625 2 602.815738 1203.61692 0.66619 0.00040159 -0.88096 -0.00053105 -0.21477 -0.00012947 602.8150666472277 99.678 0.35023 99.678 99.548 99.898 0 14 9 2 0 0 0 0.75233 1 19580 19580 22.736 17.439 1 1316300 29201 6580 19564 19572 28734 28734 0.023260027346623247 LTDFHSQD 8 Unmodified _LTDFHSQD_ 0 0 0 ENSG00000050555|ENST00000361069|LAMC3;ENST00000480883.1_1_9:133884589-133967089:+|nuORF;LAMC3|p.D568Tfs*8|2|0.4|ENSG00000050555|chr9:131052553-131052553|C/-|frameshift_variant;LAMC3|p.G699Vfs*185|2|0.47|ENSG00000050555|chr9:131057080-131057080|G/-|frameshift_variant;LAMC3|p.F794Lfs*90|1|0.35|ENSG00000050555|chr9:131066989-131066989|T/-|frameshift_variant;LAMC3|p.E99K|1|0.24|ENSG00000050555|chr9:131009509-131009509|G/A|missense_variant ENSG00000050555|ENST00000361069|LAMC3 ENSG00000050555|ENST00000361069|LAMC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76611328125 2 481.714339 961.414125 -0.05775 -2.7819E-05 -0.12252 -5.9017E-05 -0.18027 -8.6836E-05 481.7142615633815 34.067 0.41812 31.749 31.596 32.015 -2.3175 19 11 2 0 0 0 0.36038 1 6250 6250 34.102 0 1 1721800 29202 1242 19565 19573 28735 28735 -0.06812559275613239 LTDFQKAVY 9 Unmodified _LTDFQKAVY_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2;ERCC6L2|p.T191Nfs*22|1|0.04|ENSG00000182150|chr9:96004683-96004683|C/-|frameshift_variant;ERCC6L2|p.T303Hfs*50|1|0.13|ENSG00000182150|chr9:96012537-96012537|A/-|frameshift_variant;ERCC6L2|p.R438Gfs*15|1|0.38|ENSG00000182150|chr9:95921290-95921290|A/-|frameshift_variant;nc|ENSG00000182150|Q5T890-2|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7905883789062 2 542.787307 1083.56006 0.37813 0.00020525 -0.09002 -4.8862E-05 0.28811 0.00015638 542.787127192341 85.081 0.66085 85.081 84.733 85.394 0 53 18 4 0 0 0 0.039965 2 16621 16621;16625 59.368 42.255 1 11558000 29203 6767 19566 19574 28736;28737 28736 0.02162323240418118 LTDFQKAVY 9 Unmodified _LTDFQKAVY_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2;ERCC6L2|p.T191Nfs*22|1|0.04|ENSG00000182150|chr9:96004683-96004683|C/-|frameshift_variant;ERCC6L2|p.T303Hfs*50|1|0.13|ENSG00000182150|chr9:96012537-96012537|A/-|frameshift_variant;ERCC6L2|p.R438Gfs*15|1|0.38|ENSG00000182150|chr9:95921290-95921290|A/-|frameshift_variant;nc|ENSG00000182150|Q5T890-2|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7903442382812 2 542.787307 1083.56006 0.13782 7.4809E-05 0.066218 3.5942E-05 0.20404 0.00011075 542.787234693725 89.058 0.70004 85.265 84.946 85.646 -3.7926 53 19 4 0 0 0 0.037776 3 17408 17408;17411;17460 90.104 61.379 1 10302000 29204 6767 19566 19574 28738;28739;28740 28738 0.02162323240418118 LTDFQKAVY 9 Unmodified _LTDFQKAVY_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2;ERCC6L2|p.T191Nfs*22|1|0.04|ENSG00000182150|chr9:96004683-96004683|C/-|frameshift_variant;ERCC6L2|p.T303Hfs*50|1|0.13|ENSG00000182150|chr9:96012537-96012537|A/-|frameshift_variant;ERCC6L2|p.R438Gfs*15|1|0.38|ENSG00000182150|chr9:95921290-95921290|A/-|frameshift_variant;nc|ENSG00000182150|Q5T890-2|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.781005859375 2 542.787307 1083.56006 0.41494 0.00022522 -0.28315 -0.00015369 0.13179 7.1535E-05 542.7870503658764 89.251 0.76353 85.207 84.788 85.551 -4.0443 52 21 3 0 0 0 0.069179 2 16964 16964;16972 60.074 29.988 1 7781200 29205 6767 19566 19574 28741;28742 28741 0.02162323240418118 LTDFQKAVY 9 Unmodified _LTDFQKAVY_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2;ERCC6L2|p.T191Nfs*22|1|0.04|ENSG00000182150|chr9:96004683-96004683|C/-|frameshift_variant;ERCC6L2|p.T303Hfs*50|1|0.13|ENSG00000182150|chr9:96012537-96012537|A/-|frameshift_variant;ERCC6L2|p.R438Gfs*15|1|0.38|ENSG00000182150|chr9:95921290-95921290|A/-|frameshift_variant;nc|ENSG00000182150|Q5T890-2|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79052734375 2 542.787307 1083.56006 0.29741 0.00016143 -0.1854 -0.00010063 0.11201 6.0798E-05 542.7871680408356 88.901 0.77545 85.151 84.81 85.586 -3.7501 60 21 4 0 0 0 0.019191 3 17006 17002;17006;17049 93.166 43.233 1 9708100 29206 6767 19566 19574 28743;28744;28745 28744 0.02162323240418118 LTDGTITFNN 10 Unmodified _LTDGTITFNN_ 0 0 0 nc|ENSG00000187098|O75030-11|MITF;nc|ENSG00000187098|O75030-10|MITF;nc|ENSG00000187098|O75030-9|MITF;nc|ENSG00000187098|O75030-12|MITF;nc|ENSG00000187098|O75030-4|MITF;nc|ENSG00000187098|O75030-3|MITF;nc|ENSG00000187098|O75030-8|MITF;nc|ENSG00000187098|O75030-7|MITF;nc|ENSG00000187098|O75030-6|MITF;nc|ENSG00000187098|O75030-2|MITF;nc|ENSG00000187098|O75030-5|MITF;ENSG00000187098|ENST00000352241|MITF nc|ENSG00000187098|O75030-11|MITF nc|ENSG00000187098|O75030-11|MITF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7799682617188 2 548.269478 1094.5244 0.17483 9.5856E-05 -2.0678 -0.0011337 -1.893 -0.0010379 548.269429367384 62.828 1.0589 59.412 58.914 59.973 -3.4158 47 29 3 0 0 0 0.64074 1 11835 11835 27.629 7.2143 1 1696400 29207 12524 19567 19575 28746 28746 -0.019077590072356543 LTDIIRPE 8 Unmodified _LTDIIRPE_ 0 0 0 tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.722900390625 2 478.7742 955.533846 0.12152 5.8182E-05 -1.0517 -0.00050354 -0.9302 -0.00044535 478.7736145632671 82.965 0.4153 82.965 82.874 83.289 0 14 11 2 0 0 0 0.16422 1 16202 16202 81.613 20.256 1 766790 29208 26238 19568 19576 28747 28747 0.054300540689382615 LTDIIRPE 8 Unmodified _LTDIIRPE_ 0 0 0 tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7369689941406 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 86.915 1 82.964 82.464 83.464 -3.9503 0 0 0 0.10552 1 16550 16550 23.79 12.041 1 29209 26238 19568 19576 28748 28748 0.054300540689382615 LTDIIRPE 8 Unmodified _LTDIIRPE_ 0 0 0 tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7419738769531 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 87.192 1 83.242 82.742 83.742 -3.9503 0 0 0 0.029822 1 16605 16605 81.613 14.269 1 29210 26238 19568 19576 28749 28749 0.054300540689382615 LTDIIRPE 8 Unmodified _LTDIIRPE_ 0 0 0 tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.7742 955.533846 0.10718 5.1316E-05 -0.53794 -0.00025755 -0.43076 -0.00020624 478.77404305215566 86.856 0.38515 83.127 82.909 83.295 -3.7289 0.074182 9.8105E-05 NaN 81.613 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 757830 29211 26238 19568 19576 0.054300540689382615 LTDKGNAPP 9 Unmodified _LTDKGNAPP_ 0 0 0 SLC2A3|p.G74Vfs*2|1|0.16|ENSG00000059804|chr12:7933035-7933035|C/-|frameshift_variant;ENST00000476634.1_1_12:8085578-8088630:-|nuORF;ENST00000486749.5_1_12:8083049-8088630:-|nuORF;ENSG00000059804|ENST00000075120|SLC2A3 SLC2A3|p.G74Vfs*2|1|0.16|ENSG00000059804|chr12:7933035-7933035|C/-|frameshift_variant SLC2A3|p.G74Vfs*2|1|0.16|ENSG00000059804|chr12:7933035-7933035|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2388000488281 2 456.742899 911.471246 -0.23205 -0.00010599 0.41159 0.00018799 0.17954 8.2004E-05 456.74303605593695 71.348 0.88568 68.099 67.67 68.556 -3.2492 64 24 4 0 0 0 0.52396 1 13914 13914 18.146 2.2992 1 27244000 29212 1302 19569 19577 28750 28750 0.011969080007588673 LTDKNNLIN 9 Unmodified _LTDKNNLIN_ 0 0 0 REV__nc|ENSG00000188089|Q3MJ16|PLA2G4E REV__nc|ENSG00000188089|Q3MJ16|PLA2G4E MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26416015625 2 522.787838 1043.56112 0.20766 0.00010856 -0.19941 -0.00010425 0.0082516 4.3138E-06 522.7876388422649 35.328 0.41836 35.328 35.168 35.586 0 18 11 2 0 0 0 0.7906 1 6510 6510 13.042 1.5478 1 1645500 + 29213 19132 19570 19578 28751 28751 0.04108537609340601 LTDLNLRRKYR 11 Unmodified _LTDLNLRRKYR_ 0 0 0 REV__ENSG00000256294|ENST00000262894|ZNF225 REV__ENSG00000256294|ENST00000262894|ZNF225 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.1648254394531 4 362.717759 1446.84193 -0.33245 -0.00012059 -0.03229 -1.1712E-05 -0.36474 -0.0001323 362.71782880947046 15.039 0.24693 15.039 14.914 15.161 0 15 6 3 0 0 0 0.89021 1 2285 2285 0.0059557 0 1 632290 + 29214 19863 19571 19579 28752 28752 0.13638293319831973 LTDLQPQYLL 10 Unmodified _LTDLQPQYLL_ 0 0 0 REV__ENST00000543590.1_1_12:123355407-123355842:-|nuORF REV__ENST00000543590.1_1_12:123355407-123355842:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2964477539062 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 155.52 1 150.74 150.24 151.24 -4.7791 0 0 0 0.22588 1 30914 30914 9.3831 0 1 + 29215 16540 19572 19580 28753 28753 0.06146836991774762 LTDNKLSQY 9 Unmodified _LTDNKLSQY_ 0 0 0 ENST00000454360.1_1_22:17053938-17054324:+|nuORF ENST00000454360.1_1_22:17053938-17054324:+|nuORF ENST00000454360.1_1_22:17053938-17054324:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2813720703125 2 541.279846 1080.54514 0.12877 6.9701E-05 1.6388 0.00088707 1.7676 0.00095677 541.2804324403762 56.426 0.34858 56.426 56.258 56.607 0 14 9 2 0 0 0 0.46882 1 10761 10761 21.537 0 1 620810 29216 10012 19573 19581 28754 28754 0.008088313724329055 LTDNVNQL 8 Unmodified _LTDNVNQL_ 0 0 0 REV__TRIM38|p.Q242H|1|0.43|ENSG00000112343|chr6:25972087-25972087|G/T|missense_variant REV__TRIM38|p.Q242H|1|0.43|ENSG00000112343|chr6:25972087-25972087|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2387390136719 2 458.740357 915.46616 -0.11164 -5.1216E-05 0.33332 0.00015291 0.22168 0.00010169 458.7404667229522 45.059 0.62643 42.311 42.029 42.656 -2.7475 28 17 2 0 0 0 0.99312 1 8130 8130 14.838 4.7643 1 764670 + 29217 15296 19574 19582 28755 28755 0.005046041381433497 LTDPAIVKV 9 Unmodified _LTDPAIVKV_ 0 0 0 nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74407958984375 2 478.294768 954.574983 0.025364 1.2131E-05 -0.012793 -6.1188E-06 0.012571 6.0125E-06 478.2946084840377 101.38 0.59553 97.219 96.91 97.505 -4.1594 28 16 2 0 0 0 0.31673 1 19916 19916 39.95 10.868 1 1849800 29218 6178 19575 19583 28756 28756 0.09587815108420727 LTDPAIVKV 9 Unmodified _LTDPAIVKV_ 0 0 0 nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72113037109375 2 478.294768 954.574983 0.31156 0.00014902 -0.36572 -0.00017492 -0.054159 -2.5904E-05 478.29455655025413 101.5 0.58327 97.184 96.888 97.471 -4.3208 27 16 2 0 0 0 0.23492 1 19446 19446 45.7 22.963 1 1732100 29219 6178 19575 19583 28757 28757 0.09587815108420727 LTDPAIVKV 9 Unmodified _LTDPAIVKV_ 0 0 0 nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.730224609375 2 478.294768 954.574983 0.41059 0.00019638 -0.46766 -0.00022368 -0.057074 -2.7298E-05 478.294482103717 101.26 0.67191 97.271 96.957 97.629 -3.9895 32 18 3 0 0 0 0.38759 1 19485 19485 43.982 33.908 1 1640600 29220 6178 19575 19583 28758 28758 0.09587815108420727 LTDPKEDP 8 Unmodified _LTDPKEDP_ 0 0 0 nc|ENSG00000115325|Q99704-3|DOK1;ENSG00000115325|ENST00000233668|DOK1 nc|ENSG00000115325|Q99704-3|DOK1 nc|ENSG00000115325|Q99704-3|DOK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2295837402344 2 457.726915 913.439277 -0.05142 -2.3536E-05 0.36 0.00016478 0.30858 0.00014125 457.7270133329668 64.164 1.0023 64.164 63.749 64.751 0 44 28 2 0 0 0 0.49114 1 12388 12388 28.487 1.6032 1 2165600 29221 2847 19576 19584 28759 28759 -0.02090504473051169 LTDRGEESH 9 Unmodified _LTDRGEESH_ 0 0 0 REV__PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant REV__PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2813110351562 2 522.241252 1042.46795 -0.6447 -0.00033669 -1.1518 -0.00060154 -1.7966 -0.00093823 522.2406998378817 137.77 0.42392 132.84 132.62 133.04 -4.9216 19 11 2 0 0 0 0.8372 1 26483 26483 13.042 1.4022 1 2157600 + 29222 19492 19577 19585 28760 28760 -0.05158386843891094 LTDRGVMSY 9 Unmodified _LTDRGVMSY_ 0 0 0 IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant;ENST00000602190.1_1_19:50164877-50165571:-|nuORF;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3 IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2586059570312 2 521.255317 1040.49608 -0.11807 -6.1547E-05 0.7385 0.00038494 0.62042 0.0003234 521.2557212694036 65.975 0.61604 65.975 65.658 66.274 0 36 17 3 0 0 0 0.095704 2 12715 12715;12725 57.249 30.365 1 13339000 29223 3429 19578 19586 28761;28762 28761 -0.022547801881728446 LTDRGVMSY 9 Unmodified _LTDRGVMSY_ 0 0 0 IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant;ENST00000602190.1_1_19:50164877-50165571:-|nuORF;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3 IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2574462890625 2 521.255317 1040.49608 -0.3151 -0.00016425 0.6241 0.00032532 0.309 0.00016107 521.255723972398 69.336 0.64257 66.156 65.833 66.476 -3.1796 43 17 3 0 0 0 0.075017 1 13470 13470 63.227 30.442 1 16394000 29224 3429 19578 19586 28763 28763 -0.022547801881728446 LTDRGVMSY 9 Unmodified _LTDRGVMSY_ 0 0 0 IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant;ENST00000602190.1_1_19:50164877-50165571:-|nuORF;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3 IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.258544921875 2 521.255317 1040.49608 -0.34641 -0.00018057 0.79112 0.00041238 0.44472 0.00023181 521.2557630741395 69.654 0.59091 66.074 65.825 66.416 -3.5798 44 16 3 0 0 0 0.11836 1 13123 13123 49.527 13.4 1 14245000 29225 3429 19578 19586 28764 28764 -0.022547801881728446 LTDRGVMSY 9 Unmodified _LTDRGVMSY_ 0 0 0 IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant;ENST00000602190.1_1_19:50164877-50165571:-|nuORF;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3 IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.258056640625 2 521.255317 1040.49608 0.38809 0.0002023 0.12907 6.7278E-05 0.51716 0.00026957 521.2554344194149 69.559 0.8389 66.169 65.772 66.611 -3.3903 59 23 4 0 0 0 0.048406 4 13159 13112;13119;13159;13179 71.708 35.581 1 13318000 29226 3429 19578 19586 28765;28766;28767;28768 28767 -0.022547801881728446 LTDRGVMSY 9 Unmodified _LTDRGVMSY_ 0 0 0 IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant;ENST00000602190.1_1_19:50164877-50165571:-|nuORF;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3 IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.255317 1040.49608 -0.34641 -0.00018057 0.79112 0.00041238 0.44472 0.00023181 521.2557630741395 69.654 0.59091 66.074 65.825 66.416 -3.5798 -0.019499 0.00023604 NaN 71.708 44 16 3 NaN NaN NaN NaN 0 NaN NaN 0 14245000 29227 3429 19578 19586 -0.022547801881728446 LTDRNVYY 8 Unmodified _LTDRNVYY_ 0 0 0 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2801513671875 2 522.261456 1042.50836 -0.60221 -0.00031451 0.85183 0.00044488 0.24962 0.00013037 522.2617970571935 110.15 0.79762 105.77 105.44 106.24 -4.3776 35 22 2 0 0 0 0.11385 2 21691 21680;21691 60.39 1.7107 1 3334100 + 29228 16262 19579 19587 28769;28770 28770 -0.011194204534831442 LTDRNVYY 8 Unmodified _LTDRNVYY_ 0 0 0 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2794799804688 2 522.261456 1042.50836 -0.89984 -0.00046995 1.1099 0.00057965 0.21004 0.0001097 522.2618365449091 110.23 0.691 105.74 105.41 106.11 -4.4915 34 19 2 0 0 0 0.07308 2 21195 21110;21195 70.716 2.6348 1 2388100 + 29229 16262 19579 19587 28771;28772 28772 -0.011194204534831442 LTDRNVYY 8 Unmodified _LTDRNVYY_ 0 0 0 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.26123046875 2 522.261456 1042.50836 0.16719 8.7317E-05 -0.015294 -7.9875E-06 0.1519 7.933E-05 522.2614050256642 59.253 0.55571 56.048 55.787 56.343 -3.2052 31 15 3 0 0 0 0.69713 1 11046 11046 14.838 4.7643 1 1194400 + 29230 16262 19579 19587 28773 28773 -0.011194204534831442 LTDRNVYY 8 Unmodified _LTDRNVYY_ 0 0 0 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2615356445312 2 522.261456 1042.50836 0.6927 0.00036177 -0.57241 -0.00029895 0.1203 6.2826E-05 522.261121425028 109.9 0.73291 105.71 105.47 106.2 -4.1826 31 20 2 0 0 0 0.11385 2 21121 21121;21218 60.39 1.7107 1 2338700 + 29231 16262 19579 19587 28774;28775 28774 -0.011194204534831442 LTDRNVYY 8 Unmodified _LTDRNVYY_ 0 0 0 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.261456 1042.50836 -0.60221 -0.00031451 0.85183 0.00044488 0.24962 0.00013037 522.2617970571935 110.15 0.79762 105.77 105.44 106.24 -4.3776 0.029792 0.00054429 NaN 70.716 35 22 2 NaN NaN NaN NaN 0 NaN NaN 0 3334100 + 29232 16262 19579 19587 -0.011194204534831442 LTDRYCNN 8 Unmodified _LTDRYCNN_ 0 0 0 REV__nc|ENSG00000165970|Q9Y345-2|SLC6A5 REV__nc|ENSG00000165970|Q9Y345-2|SLC6A5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.1802673339844 3 333.48352 997.428729 -0.11883 -3.9628E-05 -0.4534 -0.0001512 -0.57223 -0.00019083 333.4832851740534 124.44 0.90639 119.87 119.48 120.39 -4.5757 42 25 2 0 0 0 1.0267 1 24576 24576 1.4819 0 1 4592000 + 29233 17813 19580 19588 28776 28776 -0.07008810399133836 LTDSIVRLY 9 Unmodified _LTDSIVRLY_ 0 0 0 REV__ENST00000330212.7_1_3:113672705-113672987:+|nuORF REV__ENST00000330212.7_1_3:113672705-113672987:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2633666992188 2 540.308406 1078.60226 0.29074 0.00015709 0.012317 6.655E-06 0.30305 0.00016374 540.3083302607614 161.96 0.95721 156.81 156.31 157.26 -5.1438 92 27 4 0 0 0 0.46541 1 31377 31377 21.747 4.8044 1 79833000 + 29234 20605 19581 19589 28777 28777 0.0661029864882039 LTDSSLKY 8 Unmodified _LTDSSLKY_ 0 0 0 nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF nc|ENSG00000100106|Q9H2D6-6|TRIOBP nc|ENSG00000100106|Q9H2D6-6|TRIOBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2491149902344 2 463.745108 925.475663 0.075644 3.5079E-05 -0.06971 -3.2328E-05 0.005934 2.7519E-06 463.7449662932079 54.822 0.94683 54.822 54.246 55.193 0 71 26 4 0 0 0 8448 1 10471 10471 13.615 10.028 1 18862000 29235 1930 19582 19590 28778 28778 0.009943724236563867 LTDSSLKY 8 Unmodified _LTDSSLKY_ 0 0 0 nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF nc|ENSG00000100106|Q9H2D6-6|TRIOBP nc|ENSG00000100106|Q9H2D6-6|TRIOBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2572326660156 2 463.745108 925.475663 -0.17856 -8.2808E-05 0.19107 8.861E-05 0.01251 5.8015E-06 463.74510945961146 57.68 1.0879 54.786 54.2 55.288 -2.8944 93 30 4 0 0 0 0.71273 2 10990 10990;11010 12.532 3.3382 1 20725000 29236 1930 19582 19590 28779;28780 28779 0.009943724236563867 LTDSSLKY 8 Unmodified _LTDSSLKY_ 0 0 0 nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF nc|ENSG00000100106|Q9H2D6-6|TRIOBP nc|ENSG00000100106|Q9H2D6-6|TRIOBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2501525878906 2 463.745108 925.475663 0.034495 1.5997E-05 0.036115 1.6748E-05 0.07061 3.2745E-05 463.74503435030874 58.021 1.1276 54.77 54.113 55.241 -3.2517 94 31 4 0 0 0 8448 1 10746 10746 18.373 12.181 1 20153000 29237 1930 19582 19590 28781 28781 0.009943724236563867 LTDSTLDTI 9 Unmodified _LTDSTLDTI_ 0 0 0 REV__MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant REV__MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2546691894531 2 489.75313 977.491707 0.42275 0.00020704 0.14707 7.2026E-05 0.56982 0.00027907 489.7531054072076 49.563 0.41855 49.563 49.3 49.719 0 15 11 2 0 0 0 0.54076 1 9371 9371 17.113 0.96379 1 660240 + 29238 23878 19583 19591 28782 28782 0.002060338699152453 LTDSTLDTI 9 Unmodified _LTDSTLDTI_ 0 0 0 REV__MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant REV__MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2546081542969 2 489.75313 977.491707 -0.29788 -0.00014589 0.96667 0.00047343 0.66879 0.00032754 489.75359726945425 52.497 0.70106 49.402 49.094 49.795 -3.0954 27 19 2 0 0 0 0.54076 2 9712 9663;9712 17.113 1.6654 1 877410 + 29239 23878 19583 19591 28783;28784 28784 0.002060338699152453 LTDTFTAYY 9 Unmodified _LTDTFTAYY_ 0 0 0 nc|ENSG00000134779|Q68CL5-5|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;TPGS2|p.K264Efs*26|1|0.21|ENSG00000134779|chr18:36796919-36796920|-/T|frameshift_variant;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7676391601562 2 547.755672 1093.49679 0.32763 0.00017946 0.046417 2.5425E-05 0.37405 0.00020489 547.7556678887421 130.73 0.81816 130.73 130.3 131.12 0 57 22 3 0 0 0 0.015242 3 25827 25817;25827;25856 97.075 52.668 1 19606000 29240 12337 19584 19592 28785;28786;28787 28786 -0.046216622674592145 LTDTFTAYY 9 Unmodified _LTDTFTAYY_ 0 0 0 nc|ENSG00000134779|Q68CL5-5|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;TPGS2|p.K264Efs*26|1|0.21|ENSG00000134779|chr18:36796919-36796920|-/T|frameshift_variant;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7915649414062 2 547.755672 1093.49679 0.19821 0.00010857 0.16175 8.86E-05 0.35996 0.00019717 547.7556654300042 135.79 0.94249 131.15 130.8 131.74 -4.6399 62 26 3 0 0 0 0.015242 3 26774 26764;26774;26789 97.075 52.668 1 26035000 29241 12337 19584 19592 28788;28789;28790 28789 -0.046216622674592145 LTDTFTAYY 9 Unmodified _LTDTFTAYY_ 0 0 0 nc|ENSG00000134779|Q68CL5-5|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;TPGS2|p.K264Efs*26|1|0.21|ENSG00000134779|chr18:36796919-36796920|-/T|frameshift_variant;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.782470703125 2 547.755672 1093.49679 0.084023 4.6024E-05 0.27392 0.00015004 0.35794 0.00019606 547.7557506233431 136.02 0.87665 131.13 130.75 131.62 -4.8951 72 24 4 0 0 0 1.2995E-06 1 26179 26179 74.216 69.5 1 31409000 29242 12337 19584 19592 28791 28791 -0.046216622674592145 LTDTFTAYY 9 Unmodified _LTDTFTAYY_ 0 0 0 nc|ENSG00000134779|Q68CL5-5|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;TPGS2|p.K264Efs*26|1|0.21|ENSG00000134779|chr18:36796919-36796920|-/T|frameshift_variant;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 nc|ENSG00000134779|Q68CL5-5|TPGS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7730102539062 2 547.755672 1093.49679 0.29977 0.0001642 0.21679 0.00011875 0.51657 0.00028295 547.7556799189186 135.95 0.92741 131.12 130.66 131.59 -4.8307 65 25 3 0 0 0 0.015242 3 26210 26130;26210;26250 97.075 52.668 1 22362000 29243 12337 19584 19592 28792;28793;28794 28793 -0.046216622674592145 LTDTIHRT 8 Unmodified _LTDTIHRT_ 0 0 0 REV__nc|ENSG00000143374|Q9BW92-2|TARS2 REV__nc|ENSG00000143374|Q9BW92-2|TARS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73187255859375 2 478.761623 955.508694 NaN NaN NaN NaN NaN NaN NaN 87.119 1 83.168 82.668 83.668 -3.9503 0 0 0 0.17894 1 16590 16590 32.117 8.0964 1 + 29244 16721 19585 19593 28795 28795 0.02915999266383551 LTDTSTPAL 9 Unmodified _LTDTSTPAL_ 0 0 0 REV__ENST00000465806.6_1_X:48935109-48935457:-|nuORF REV__ENST00000465806.6_1_X:48935109-48935457:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2332458496094 2 459.742565 917.470577 -0.06075 -2.793E-05 0.52405 0.00024093 0.4633 0.000213 459.74259994178277 115.63 0.51286 111.15 110.84 111.36 -4.4726 20 14 2 0 0 0 0.41781 1 22754 22754 24.674 3.8027 1 1045200 + 29245 21957 19586 19594 28796 28796 0.008540685610341825 LTDWTYLYE 9 Unmodified _LTDWTYLYE_ 0 0 0 REV__ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant REV__ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2847900390625 2 602.282054 1202.54956 NaN NaN NaN NaN NaN NaN NaN 99.831 1 99.831 99.331 100.33 0 0 0 0 0.20155 1 19580 19580 23.148 5.0134 1 + 29246 13816 19587 19595 28797 28797 -0.04361704204666239 LTDWTYLYE 9 Unmodified _LTDWTYLYE_ 0 0 0 REV__ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant REV__ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2980346679688 2 602.282054 1202.54956 NaN NaN NaN NaN NaN NaN NaN 104.35 1 100.29 99.792 100.79 -4.0543 0 0 0 0.20155 1 20066 20066 23.148 5.0134 1 + 29247 13816 19587 19595 28798 28798 -0.04361704204666239 LTEAFRFTP 9 Unmodified _LTEAFRFTP_ 0 0 0 sp|P16758|UL20_HCMVAUncharacterizedproteinUL20OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL20PE=3SV=1 sp|P16758|UL20_HCMVAUncharacterizedproteinUL20OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL20PE=3SV=1 sp|P16758|UL20_HCMVAUncharacterizedproteinUL20OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL20PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2613525390625 2 541.287474 1080.5604 0.64374 0.00034845 -0.58847 -0.00031853 0.055263 2.9913E-05 541.2869436983298 113.66 0.59547 109.39 108.88 109.48 -4.2725 27 16 2 0 0 0 0.74858 1 21842 21842 12.241 2.1667 1 966150 29248 25754 19588 19596 28799 28799 0.023337429602634074 LTEGELEEY 9 Unmodified _LTEGELEEY_ 0 0 0 ENST00000479805.1_1_10:111886198-111892190:+|nuORF;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3 ENST00000479805.1_1_10:111886198-111892190:+|nuORF ENST00000479805.1_1_10:111886198-111892190:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2728271484375 2 541.748044 1081.48154 0.34911 0.00018913 -0.16209 -8.7811E-05 0.18702 0.00010132 541.747732941992 91.675 0.64804 87.581 87.227 87.875 -4.0946 30 18 2 0 0 0 0.027812 1 17466 17466 81.613 35.592 1 3226500 29249 4757 19589 19597 28800 28800 -0.05594573855296403 LTEGELEEY 9 Unmodified _LTEGELEEY_ 0 0 0 ENST00000479805.1_1_10:111886198-111892190:+|nuORF;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3 ENST00000479805.1_1_10:111886198-111892190:+|nuORF ENST00000479805.1_1_10:111886198-111892190:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.748044 1081.48154 0.24116 0.00013065 -0.32715 -0.00017724 -0.085991 -4.6585E-05 541.7478500011583 87.321 0.52057 87.321 86.982 87.503 0 -0.12968 -9.3382E-05 NaN 81.613 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1907500 29250 4757 19589 19597 -0.05594573855296403 LTEGENHY 8 Unmodified _LTEGENHY_ 0 0 0 REV__USP54|p.S481N|1|0.14|ENSG00000166348|chr10:73530709-73530709|C/T|missense_variant REV__USP54|p.S481N|1|0.14|ENSG00000166348|chr10:73530709-73530709|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77862548828125 2 481.714339 961.414125 0.023713 1.1423E-05 -0.013489 -6.4977E-06 0.010224 4.9253E-06 481.7143361837041 31.736 0.38224 31.736 31.53 31.913 0 20 10 2 0 0 0 0.68128 1 5771 5771 16.942 0 1 1215700 + 29251 25526 19590 19598 28801 28801 -0.06812559275613239 LTEGENHY 8 Unmodified _LTEGENHY_ 0 0 0 REV__USP54|p.S481N|1|0.14|ENSG00000166348|chr10:73530709-73530709|C/T|missense_variant REV__USP54|p.S481N|1|0.14|ENSG00000166348|chr10:73530709-73530709|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2537536621094 2 481.714339 961.414125 0.24158 0.00011637 0.22556 0.00010866 0.46714 0.00022503 481.7141932754088 33.93 0.3791 31.783 31.634 32.013 -2.1468 20 10 3 0 0 0 0.86749 1 5925 5925 15.847 7.2539 1 1371700 + 29252 25526 19590 19598 28802 28802 -0.06812559275613239 LTEGENHY 8 Unmodified _LTEGENHY_ 0 0 0 REV__USP54|p.S481N|1|0.14|ENSG00000166348|chr10:73530709-73530709|C/T|missense_variant REV__USP54|p.S481N|1|0.14|ENSG00000166348|chr10:73530709-73530709|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7870178222656 2 481.714339 961.414125 0.30183 0.00014539 -0.060473 -2.9131E-05 0.24135 0.00011626 481.7141814160976 34.015 0.49326 31.799 31.527 32.02 -2.2158 27 13 3 0 0 0 0.58903 1 5965 5965 30.225 0 1 1089600 + 29253 25526 19590 19598 28803 28803 -0.06812559275613239 LTEGERITY 9 Unmodified _LTEGERITY_ 0 0 0 REV__MDGA2|p.L178Ffs*6|1|0.4|ENSG00000139915|chr14:47144129-47144130|-/A|frameshift_variant REV__MDGA2|p.L178Ffs*6|1|0.4|ENSG00000139915|chr14:47144129-47144130|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2797241210938 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 47.535 1 44.593 44.093 45.093 -2.9421 0 0 0 0.0914 1 8669 8669 39.95 3.8227 1 + 29254 16551 19591 19599 28804 28804 0.008088313724329055 LTEGKPTQ 8 Unmodified _LTEGKPTQ_ 0 0 0 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2356262207031 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 66.753 1 63.426 62.926 63.926 -3.3268 0 0 0 0.21486 1 12574 12574 12.532 3.9383 1 29255 26090 19592 19600 28805 28805 0.019015056264720442 LTEGPHLYY 9 Unmodified _LTEGPHLYY_ 0 0 0 nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1 nc|ENSG00000140992|O15530-4|PDPK1 nc|ENSG00000140992|O15530-4|PDPK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.774658203125 2 546.771657 1091.52876 0.14844 8.1161E-05 -0.44607 -0.0002439 -0.29763 -0.00016274 546.7715415172155 95.12 0.62241 95.12 94.798 95.42 0 42 17 4 0 0 0 0.25976 2 18610 18610;18635 31.728 20.829 1 3505000 29256 4338 19593 19601 28806;28807 28806 -0.013342497936719155 LTEGPHLYY 9 Unmodified _LTEGPHLYY_ 0 0 0 nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1 nc|ENSG00000140992|O15530-4|PDPK1 nc|ENSG00000140992|O15530-4|PDPK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7730712890625 2 546.771657 1091.52876 0.22437 0.00012268 -0.8655 -0.00047323 -0.64112 -0.00035055 546.7715983391544 99.498 0.97478 95.366 94.992 95.967 -4.1326 48 27 3 0 0 0 0.35443 1 19563 19563 28.487 5.7506 1 2723600 29257 4338 19593 19601 28808 28808 -0.013342497936719155 LTEHLIGF 8 Unmodified _LTEHLIGF_ 0 0 0 REV__nc|ENSG00000147874|Q7Z4H7-3|HAUS6 REV__nc|ENSG00000147874|Q7Z4H7-3|HAUS6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2584228515625 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 142.4 1 137.75 137.25 138.25 -4.656 0 0 0 0.21486 1 28149 28149 10.183 0 1 + 29258 16956 19594 19602 28809 28809 0.03470686385821864 LTEIMSMGY 9 Unmodified _LTEIMSMGY_ 0 0 0 ENST00000588329.5_1_19:13056723-13059660:+|nuORF;nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A ENST00000588329.5_1_19:13056723-13059660:+|nuORF ENST00000588329.5_1_19:13056723-13059660:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2709350585938 2 522.740654 1043.46675 -0.15887 -8.3047E-05 0.32319 0.00016894 0.16432 8.5896E-05 522.7408930015417 141.15 0.79689 136.5 136.16 136.95 -4.6493 40 22 3 0 0 0 1.4879E-05 1 27858 27858 74.216 55.842 1 6599600 29259 6620 19595 19603 28810 28810 -0.053240605286646314 LTEIMSMGY 9 Unmodified _LTEIMSMGY_ 0 0 0 ENST00000588329.5_1_19:13056723-13059660:+|nuORF;nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A ENST00000588329.5_1_19:13056723-13059660:+|nuORF ENST00000588329.5_1_19:13056723-13059660:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2662963867188 2 522.740654 1043.46675 -0.56123 -0.00029338 0.52936 0.00027672 -0.031873 -1.6661E-05 522.7409369415079 141.4 0.87894 136.41 136.03 136.91 -4.9877 46 24 3 0 0 0 1.4879E-05 1 27267 27267 67.187 60.7 1 5649000 29260 6620 19595 19603 28811 28811 -0.053240605286646314 LTEIMSMGY 9 Unmodified _LTEIMSMGY_ 0 0 0 ENST00000588329.5_1_19:13056723-13059660:+|nuORF;nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A ENST00000588329.5_1_19:13056723-13059660:+|nuORF ENST00000588329.5_1_19:13056723-13059660:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27099609375 2 522.740654 1043.46675 0.32336 0.00016903 -0.17942 -9.3789E-05 0.14394 7.5246E-05 522.7404866967095 141.17 0.49342 136.3 136.15 136.64 -4.8678 22 13 2 0 0 0 0.10777 1 27251 27251 57.471 36.6 1 3051200 29261 6620 19595 19603 28812 28812 -0.053240605286646314 LTEISCSMVV 10 Unmodified _LTEISCSMVV_ 0 0 0 ENST00000518857.5_1_8:104081005-104081197:+|nuORF ENST00000518857.5_1_8:104081005-104081197:+|nuORF ENST00000518857.5_1_8:104081005-104081197:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.26708984375 2 541.267035 1080.51952 0.30534 0.00016527 -0.5493 -0.00029732 -0.24396 -0.00013205 541.266785877818 123.58 0.68141 123.58 123.2 123.88 0 34 18 3 0 0 0 0.71097 1 24319 24319 10.074 0 1 4989800 29262 10811 19596 19604 28813 28813 -0.01752102465866301 LTEISCSMVV 10 Unmodified _LTEISCSMVV_ 0 0 0 ENST00000518857.5_1_8:104081005-104081197:+|nuORF ENST00000518857.5_1_8:104081005-104081197:+|nuORF ENST00000518857.5_1_8:104081005-104081197:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2692260742188 2 541.267035 1080.51952 0.27215 0.00014731 -0.46963 -0.0002542 -0.19748 -0.00010689 541.2666240033168 128.06 0.60513 123.44 123.09 123.7 -4.6214 38 16 3 0 0 0 0.664 1 25207 25207 14.838 1.3304 1 3079900 29263 10811 19596 19604 28814 28814 -0.01752102465866301 LTEISCSMVV 10 Unmodified _LTEISCSMVV_ 0 0 0 ENST00000518857.5_1_8:104081005-104081197:+|nuORF ENST00000518857.5_1_8:104081005-104081197:+|nuORF ENST00000518857.5_1_8:104081005-104081197:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26708984375 2 541.267035 1080.51952 0.23894 0.00012933 -0.31945 -0.00017291 -0.080511 -4.3578E-05 541.2668232670244 128.26 0.73578 123.52 123.17 123.9 -4.7408 42 20 3 0 0 0 0.57735 3 24719 24635;24700;24719 20.454 1.1966 1 4097400 29264 10811 19596 19604 28815;28816;28817 28817 -0.01752102465866301 LTEIYQGAF 9 Unmodified _LTEIYQGAF_ 0 0 0 TCN1|p.S277Y|1|0.13|ENSG00000134827|chr11:59855976-59855976|G/T|missense_variant TCN1|p.S277Y|1|0.13|ENSG00000134827|chr11:59855976-59855976|G/T|missense_variant TCN1|p.S277Y|1|0.13|ENSG00000134827|chr11:59855976-59855976|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2697143554688 2 521.266207 1040.51786 0.15145 7.8947E-05 1.3174 0.00068669 1.4688 0.00076564 521.2668612509261 58.877 0.56223 55.672 55.434 55.997 -3.2052 41 15 3 0 0 0 0.67531 1 11029 11029 7.9102 0 1 6641300 29265 25829 19597 19605 28818 28818 -0.0007765216794268781 LTEKLRRRKRN 11 Unmodified _LTEKLRRRKRN_ 0 0 0 REV__nc|ENSG00000114346|Q9H8V3-2|ECT2 REV__nc|ENSG00000114346|Q9H8V3-2|ECT2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2639465332031 3 490.642697 1468.90626 NaN NaN NaN NaN NaN NaN NaN 162.93 1 157.75 157.25 158.25 -5.1878 0 0 0 0.23698 1 31668 31668 1.1098 0.096179 1 + 29266 15370 19598 19606 28819 28819 0.19056493196626434 LTELQKAKI 9 Unmodified _LTELQKAKI_ 0 0 0 REV__ENSG00000089116|ENST00000261731|LHX5 REV__ENSG00000089116|ENST00000261731|LHX5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2620849609375 2 522.326599 1042.63865 NaN NaN NaN NaN NaN NaN NaN 135.99 1 135.99 135.49 136.49 0 0 0 0 0.21844 1 26943 26943 18.146 0 1 + 29267 14522 19599 19607 28820 28820 0.11903175545512568 LTELRKEVRLL 11 Unmodified _LTELRKEVRLL_ 0 0 0 ENSG00000170191|ENST00000304788|NANP ENSG00000170191|ENST00000304788|NANP ENSG00000170191|ENST00000304788|NANP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 457.28814697265625 3 457.289038 1368.84528 NaN NaN NaN NaN NaN NaN NaN 160.59 1 155.36 154.86 155.86 -5.2299 0 0 0 0.22632 1 31186 31186 0.0059557 0 1 29268 6049 19600 19608 28821 28821 0.17561543373858512 LTEPPKLL 8 Unmodified _LTEPPKLL_ 0 0 0 ENST00000474198.1_1_5:152870409-152873630:+|nuORF;GRIA1|p.D400Rfs*2|1|0.14|ENSG00000155511|chr5:153698100-153698101|-/G|frameshift_variant;ENST00000481559.6_1_5:152869375-153085697:+|nuORF;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1 ENST00000474198.1_1_5:152870409-152873630:+|nuORF ENST00000474198.1_1_5:152870409-152873630:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 457.2580261230469 2 455.784036 909.553519 0.42302 0.0001928 -0.1052 -4.7948E-05 0.31782 0.00014486 455.7839105421382 160.69 1.4092 155.44 154.61 156.02 -5.2526 94 39 3 0 0 0 8448 1 31205 31205 0.063987 0 1 9217500 29269 5048 19601 19609 28822 28822 0.09512430079701062 LTEQQKALY 9 Unmodified _LTEQQKALY_ 0 0 0 POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant;ENSG00000143157|ENST00000367876|POGK;POGK|p.N230Tfs*8|1|0.35|ENSG00000143157|chr1:166849262-166849262|A/-|frameshift_variant;POGK|p.N230Kfs*89|1|0.26|ENSG00000143157|chr1:166849261-166849262|-/A|frameshift_variant POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7665405273438 2 547.298039 1092.58152 0.064267 3.5173E-05 -0.34353 -0.00018801 -0.27927 -0.00015284 547.2979393920865 50.041 0.55801 47.16 46.905 47.463 -2.8811 34 15 3 0 0 0 0.022252 2 9465 9450;9465 90.135 28.777 1 4788100 29270 4459 19602 19610 28823;28824 28824 0.0389370826915183 LTEQQKALY 9 Unmodified _LTEQQKALY_ 0 0 0 POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant;ENSG00000143157|ENST00000367876|POGK;POGK|p.N230Tfs*8|1|0.35|ENSG00000143157|chr1:166849262-166849262|A/-|frameshift_variant;POGK|p.N230Kfs*89|1|0.26|ENSG00000143157|chr1:166849261-166849262|-/A|frameshift_variant POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7688598632812 2 547.298039 1092.58152 0.061316 3.3558E-05 -0.34481 -0.00018871 -0.28349 -0.00015516 547.2978290797378 50.181 0.53289 47.182 46.938 47.471 -2.999 39 15 3 0 0 0 0.012196 1 9171 9171 100.09 38.733 1 4305500 29271 4459 19602 19610 28825 28825 0.0389370826915183 LTEQQKALY 9 Unmodified _LTEQQKALY_ 0 0 0 POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant;ENSG00000143157|ENST00000367876|POGK;POGK|p.N230Tfs*8|1|0.35|ENSG00000143157|chr1:166849262-166849262|A/-|frameshift_variant;POGK|p.N230Kfs*89|1|0.26|ENSG00000143157|chr1:166849261-166849262|-/A|frameshift_variant POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7711181640625 2 547.298039 1092.58152 0.0061141 3.3462E-06 -0.22573 -0.00012354 -0.21962 -0.0001202 547.2979496313407 50.15 0.60304 47.143 46.839 47.443 -3.0068 39 17 3 0 0 0 0.012196 1 9227 9227 100.09 41.412 1 4073600 29272 4459 19602 19610 28826 28826 0.0389370826915183 LTEQQKALY 9 Unmodified _LTEQQKALY_ 0 0 0 POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant;ENSG00000143157|ENST00000367876|POGK;POGK|p.N230Tfs*8|1|0.35|ENSG00000143157|chr1:166849262-166849262|A/-|frameshift_variant;POGK|p.N230Kfs*89|1|0.26|ENSG00000143157|chr1:166849261-166849262|-/A|frameshift_variant POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 547.298039 1092.58152 0.68854 0.00037683 -1.0713 -0.00058631 -0.38275 -0.00020948 547.2975249520098 47.043 0.7783 47.043 46.764 47.542 0 -0.089005 -0.00066624 NaN 100.09 41 21 3 NaN NaN NaN NaN 0 NaN NaN 0 4004600 29273 4459 19602 19610 0.0389370826915183 LTEREGALKY 10 Unmodified _LTEREGALKY_ 0 0 0 ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ENST00000478000.5_1_7:938560-944975:-|nuORF ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2606811523438 2 590.322045 1178.62954 0.63307 0.00037372 -0.74077 -0.00043729 -0.10769 -6.3574E-05 590.3215897392786 44.573 0.56108 44.573 44.288 44.849 0 34 15 3 0 0 0 0.15354 3 8340 8340;8343;8359 42.835 26.523 1 6126700 29274 68 19603 19611 28827;28828;28829 28827 0.04736782189183941 LTEREGALKY 10 Unmodified _LTEREGALKY_ 0 0 0 ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ENST00000478000.5_1_7:938560-944975:-|nuORF ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.26416015625 2 590.322045 1178.62954 0.41862 0.00024712 -0.61146 -0.00036096 -0.19283 -0.00011383 590.3217100638974 47.549 0.55711 44.607 44.342 44.899 -2.9421 41 15 4 0 0 0 0.15354 1 8720 8720 24.991 19.588 1 6159300 29275 68 19603 19611 28830 28830 0.04736782189183941 LTEREGALKY 10 Unmodified _LTEREGALKY_ 0 0 0 ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ENST00000478000.5_1_7:938560-944975:-|nuORF ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2681274414062 2 590.322045 1178.62954 -0.079447 -4.6899E-05 0.12526 7.3943E-05 0.045811 2.7043E-05 590.3220537223974 47.623 0.62017 44.673 44.295 44.915 -2.9499 41 17 3 0 0 0 0.097483 3 8671 8671;8718;8722 61.09 28.753 1 4889900 29276 68 19603 19611 28831;28832;28833 28831 0.04736782189183941 LTEREGALKY 10 Unmodified _LTEREGALKY_ 0 0 0 ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ENST00000478000.5_1_7:938560-944975:-|nuORF ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 590.322045 1178.62954 0.40776 0.00024071 -0.15748 -9.2962E-05 0.25028 0.00014775 590.3217311617628 47.446 0.45233 44.577 44.357 44.809 -2.869 -0.030309 0.00027552 NaN 61.09 35 12 4 NaN NaN NaN NaN 0 NaN NaN 0 7924700 29277 68 19603 19611 0.04736782189183941 LTESYNIKN 9 Unmodified _LTESYNIKN_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2830200195312 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 99.534 1 95.578 95.078 96.078 -3.9564 0 0 0 0.23508 1 19111 19111 12.241 0.60036 1 + 29278 18819 19604 19612 28834 28834 0.008088313724329055 LTFEKRSY 8 Unmodified _LTFEKRSY_ 0 0 0 CTNNBL1|p.N96H|1|0.21|ENSG00000132792|chr20:37737444-37737444|A/C|missense_variant;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1 CTNNBL1|p.N96H|1|0.21|ENSG00000132792|chr20:37737444-37737444|A/C|missense_variant CTNNBL1|p.N96H|1|0.21|ENSG00000132792|chr20:37737444-37737444|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2809448242188 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 69.713 1 66.133 65.633 66.633 -3.5798 0 0 0 0.21323 1 13130 13130 14.582 1.0738 1 29279 745 19605 19613 28835 28835 0.025174564432290936 LTFILTCIY 9 Unmodified _LTFILTCIY_ 0 0 0 REV__ENST00000531788.5_1_6:135639599-135639752:-|nuORF REV__ENST00000531788.5_1_6:135639599-135639752:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.794677734375 2 543.798829 1085.5831 0.26032 0.00014156 2.8353 0.0015418 3.0956 0.0016834 543.7989402021118 128.85 0.17563 124.22 124.12 124.29 -4.6292 6 4 2 0 0 0 0.35443 2 25390 25390;25412 28.487 3.0875 1 772890 + 29280 22774 19606 19614 28836;28837 28836 0.04373626033543587 LTFLLLLDA 9 Unmodified _LTFLLLLDA_ 0 0 0 REV__ACKR4|p.V218Cfs*11|1|0.17|ENSG00000129048|chr3:132601045-132601045|G/-|frameshift_variant REV__ACKR4|p.V218Cfs*11|1|0.17|ENSG00000129048|chr3:132601045-132601045|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.1684265136719 3 340.210954 1017.61103 NaN NaN NaN NaN NaN NaN NaN 17.833 1 16.319 15.819 16.819 -1.5148 0 0 0 0.19622 1 2613 2613 0.96228 0 1 + 29281 12918 19607 19615 28838 28838 0.10293272285275634 LTFLSFIVF 9 Unmodified _LTFLSFIVF_ 0 0 0 REV__ENSG00000248771|ENST00000507311|SMIM31 REV__ENSG00000248771|ENST00000507311|SMIM31 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7766723632812 2 543.815336 1085.61612 NaN NaN NaN NaN NaN NaN NaN 162.45 1 157.27 156.77 157.77 -5.1878 0 0 0 0.22621 1 31542 31542 15.847 1.0089 1 + 29282 19817 19608 19616 28839 28839 0.07673576147908534 LTFSYIAF 8 Unmodified _LTFSYIAF_ 0 0 0 nc|ENSG00000125744|O75298-2|RTN2;ENSG00000125744|ENST00000245923|RTN2 nc|ENSG00000125744|O75298-2|RTN2 nc|ENSG00000125744|O75298-2|RTN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2548522949219 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 126.53 1 126.53 126.03 127.03 0 0 0 0 0.21486 1 24971 24971 10.183 0.83596 1 29283 3383 19609 19617 28840 28840 0.013841681542771767 LTGAFVWCQGY 11 Unmodified _LTGAFVWCQGY_ 0 0 0 REV__ENSG00000125780|ENST00000381458|TGM3 REV__ENSG00000125780|ENST00000381458|TGM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7666015625 2 622.792066 1243.56958 0.14634 9.1142E-05 -0.30894 -0.00019241 -0.1626 -0.00010126 622.7923837864205 94.124 0.20444 94.124 93.97 94.175 0 6 5 2 0 0 0 0.66829 1 18435 18435 13.906 1.3745 1 1285800 + 29284 15829 19610 19618 28841 28841 -0.04246231745696605 LTGAFVWCQGY 11 Unmodified _LTGAFVWCQGY_ 0 0 0 REV__ENSG00000125780|ENST00000381458|TGM3 REV__ENSG00000125780|ENST00000381458|TGM3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 622.792066 1243.56958 0.14634 9.1142E-05 -0.30894 -0.00019241 -0.1626 -0.00010126 622.7923837864205 94.124 0.20444 94.124 93.97 94.175 0 0 0 NaN 13.906 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1285800 + 29285 15829 19610 19618 -0.04246231745696605 LTGDVVAHAY 10 Unmodified _LTGDVVAHAY_ 0 0 0 SYVN1|p.A17D|1|0.17|ENSG00000162298|chr11:65133552-65133552|G/T|missense_variant SYVN1|p.A17D|1|0.17|ENSG00000162298|chr11:65133552-65133552|G/T|missense_variant SYVN1|p.A17D|1|0.17|ENSG00000162298|chr11:65133552-65133552|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.690185546875 2 523.269281 1044.52401 0.42397 0.00022185 -0.87068 -0.0004556 -0.44671 -0.00023375 523.7703549631848 106.12 0.58824 106.12 105.84 106.43 0 38 16 4 0 0 0 0.48672 1 20833 20833 25.399 4.9457 1 1835600 29286 25812 19611 19619 28842 28842 0.0035286606357658457 LTGDVVAHAY 10 Unmodified _LTGDVVAHAY_ 0 0 0 SYVN1|p.A17D|1|0.17|ENSG00000162298|chr11:65133552-65133552|G/T|missense_variant SYVN1|p.A17D|1|0.17|ENSG00000162298|chr11:65133552-65133552|G/T|missense_variant SYVN1|p.A17D|1|0.17|ENSG00000162298|chr11:65133552-65133552|G/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.269281 1044.52401 0.42397 0.00022185 -0.87068 -0.0004556 -0.44671 -0.00023375 523.7703549631848 106.12 0.58824 106.12 105.84 106.43 0 0.023239 -0.00041198 NaN 25.399 38 16 4 NaN NaN NaN NaN 0 NaN NaN 0 1835600 29287 25812 19611 19619 0.0035286606357658457 LTGDVVAHAY 10 Unmodified _LTGDVVAHAY_ 0 0 0 SYVN1|p.A17D|1|0.17|ENSG00000162298|chr11:65133552-65133552|G/T|missense_variant SYVN1|p.A17D|1|0.17|ENSG00000162298|chr11:65133552-65133552|G/T|missense_variant SYVN1|p.A17D|1|0.17|ENSG00000162298|chr11:65133552-65133552|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.269281 1044.52401 0.6869 0.00035943 -0.14783 -7.7354E-05 0.53907 0.00028208 523.2689101274093 110.26 0.66588 106.07 105.72 106.38 -4.1826 -0.023239 0.0003445 NaN 25.399 28 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2087300 29288 25812 19611 19619 0.0035286606357658457 LTGKPLDP 8 Unmodified _LTGKPLDP_ 0 0 0 ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3;ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3 ENST00000414786.6_1_22:51113069-51169737:+|nuORF ENST00000414786.6_1_22:51113069-51169737:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3799438476562 1 840.482545 839.475269 0.77715 0.00065318 -0.41594 -0.00034959 0.3612 0.00030358 840.4821140952548 111.42 1.0496 107.19 106.69 107.74 -4.2289 89 29 4 0 0 0 0.36038 1 21402 21402 34.102 3.8776 1 69929000 29289 9607 19612 19620 28843 28843 0.04910997494471303 LTGNLNKYKT 10 Unmodified _LTGNLNKYKT_ 0 0 0 tr|U7SE95|U7SE95_FUSNUProteinRecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recAPE=3SV=1 tr|U7SE95|U7SE95_FUSNUProteinRecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recAPE=3SV=1 tr|U7SE95|U7SE95_FUSNUProteinRecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3222045898438 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 106.7 1 102.61 102.11 103.11 -4.0913 0 0 0 0.22527 1 20517 20517 21.537 1.0834 1 29290 25874 19613 19621 28844 28844 0.06533086051786086 LTGQSKAG 8 Unmodified _LTGQSKAG_ 0 0 0 ENST00000569981.2_1_16:29822473-29822623:-|nuORF ENST00000569981.2_1_16:29822473-29822623:-|nuORF ENST00000569981.2_1_16:29822473-29822623:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21142578125 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 28.104 1 28.104 27.604 28.604 0 0 0 0 0.22625 1 4979 4979 0.62683 0 1 29291 11411 19614 19622 28845 28845 0.01812967283535727 LTGQSKAG 8 Unmodified _LTGQSKAG_ 0 0 0 ENST00000569981.2_1_16:29822473-29822623:-|nuORF ENST00000569981.2_1_16:29822473-29822623:-|nuORF ENST00000569981.2_1_16:29822473-29822623:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21246337890625 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 30.403 1 28.286 27.786 28.786 -2.1167 0 0 0 0.22625 1 5490 5490 0.62683 0 1 29292 11411 19614 19622 28846 28846 0.01812967283535727 LTGRKGGC 8 Unmodified _LTGRKGGC_ 0 0 0 nc|ENSG00000131828|P08559-3|PDHA1;ENSG00000131828|ENST00000422285|PDHA1;nc|ENSG00000131828|P08559-2|PDHA1;nc|ENSG00000131828|P08559-4|PDHA1 nc|ENSG00000131828|P08559-3|PDHA1 nc|ENSG00000131828|P08559-3|PDHA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 396.5016174316406 2 396.213255 790.411957 NaN NaN NaN NaN NaN NaN NaN 148.4 1 148.4 147.9 148.9 0 0 0 0 0.23366 1 29699 29699 0.0082765 0 1 29293 3696 19615 19623 28847 28847 0.008367335055936564 LTGSGPSVPT 10 Unmodified _LTGSGPSVPT_ 0 0 0 REV__ENST00000575282.5_1_17:78187814-78194112:-|nuORF REV__ENST00000575282.5_1_17:78187814-78194112:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2420959472656 2 458.242732 914.470912 0.13532 6.2011E-05 -0.09944 -4.5568E-05 0.035884 1.6444E-05 458.2426881381453 39.374 0.41727 36.969 36.756 37.173 -2.4049 16 11 2 0 0 0 0.68961 1 7013 7013 12.241 0.60036 1 592500 + 29294 23201 19616 19624 28848 28848 0.010254882809135779 LTGSTLILS 9 Unmodified _LTGSTLILS_ 0 0 0 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7513427734375 2 452.771126 903.527698 -0.11064 -5.0092E-05 0.17739 8.0317E-05 0.066754 3.0224E-05 452.7710822443974 133.88 0.74295 129.24 128.92 129.67 -4.6399 40 20 3 0 0 0 0.6329 1 26358 26358 10.824 0 1 4121400 + 29295 19874 19617 19625 28849 28849 0.07207535837449086 LTGSVGVS 8 Unmodified _LTGSVGVS_ 0 0 0 REV__ENSG00000170458|ENST00000302014|CD14 REV__ENSG00000170458|ENST00000302014|CD14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015686035156 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 93.526 1 89.682 89.182 90.182 -3.844 0 0 0 0.21486 1 17929 17929 9.3474 0 1 + 29296 18163 19618 19626 28850 28850 0.01566162534970772 LTGVKDWQGF 10 Unmodified _LTGVKDWQGF_ 0 0 0 ENST00000504733.1_1_3:130546621-130547209:+|nuORF ENST00000504733.1_1_3:130546621-130547209:+|nuORF ENST00000504733.1_1_3:130546621-130547209:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3242797851562 2 575.798206 1149.58186 0.47681 0.00027455 0.39653 0.00022832 0.87334 0.00050287 575.798206178029 116.96 0.81118 112.6 112.2 113.01 -4.3585 42 22 3 0 0 0 0.67319 1 22474 22474 13.906 4.5229 1 2871000 29297 10659 19619 19627 28851 28851 0.013051279890078149 LTGVLRLPVPD 11 Unmodified _LTGVLRLPVPD_ 0 0 0 ENST00000409547.5_2_2:233562064-233565301:+|nuORF;ENST00000409196.7_2_2:233562064-233599880:+|nuORF;ENST00000430720.5_1_2:233562064-233599942:+|nuORF ENST00000409547.5_2_2:233562064-233565301:+|nuORF ENST00000409547.5_2_2:233562064-233565301:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.268798828125 2 590.358431 1178.70231 NaN NaN NaN NaN NaN NaN NaN 166.2 1 166.2 165.7 166.7 0 0 0 0 0.21513 1 33822 33822 15.248 6.5031 1 29298 9562 19620 19628 28852 28852 0.1201053598258568 LTGVRFKAQLK 11 Unmodified _LTGVRFKAQLK_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7672119140625 2 630.892972 1259.77139 NaN NaN NaN NaN NaN NaN NaN 156.05 1 150.77 150.27 151.27 -5.2854 0 0 0 0.23018 1 30270 30270 8.1555 0.54658 1 29299 4411 19621 19629 28853 28853 0.15189620002161064 LTHGAPGPDP 10 Unmodified _LTHGAPGPDP_ 0 0 0 REV__nc|ENSG00000125967|Q96P71-2|NECAB3 REV__nc|ENSG00000125967|Q96P71-2|NECAB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2403259277344 2 481.240524 960.466495 -0.31947 -0.00015374 0.62945 0.00030292 0.30998 0.00014918 481.2407568535047 37.97 0.52479 35.501 35.151 35.676 -2.4688 27 14 2 0 0 0 0.48196 1 7037 7037 0.063865 0 1 689830 + 29300 15846 19622 19630 28854 28854 -0.015319761420073519 LTHGTLHAL 9 Unmodified _LTHGTLHAL_ 0 0 0 REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7852783203125 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 90.229 1 86.451 85.951 86.951 -3.7779 0 0 0 0.22251 1 17266 17266 16.942 0 1 + 29301 15279 19623 19631 28855 28855 0.052208935086468955 LTHIIEGF 8 Unmodified _LTHIIEGF_ 0 0 0 PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant;PHC1|p.A848Dfs*59|1|0.09|ENSG00000111752|chr12:8937240-8937241|-/ACCAC|frameshift_variant;ENSG00000111752|ENST00000544916|PHC1 PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.258056640625 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 136.12 1 136.12 135.62 136.62 0 0 0 0 0.18417 1 26967 26967 30.225 0 1 29302 2645 19624 19632 28856 28856 0.03470686385810495 LTHLLLPCLKA 11 Unmodified _LTHLLLPCLKA_ 0 0 0 nc|ENSG00000167536|Q6UX07-3|DHRS13;nc|ENSG00000167536|Q6UX07-2|DHRS13;DHRS13|p.H340Tfs*23|1|0.32|ENSG00000167536|chr17:28898557-28898557|G/-|frameshift_variant;ENSG00000167536|ENST00000378895|DHRS13 nc|ENSG00000167536|Q6UX07-3|DHRS13 nc|ENSG00000167536|Q6UX07-3|DHRS13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 407.9261779785156 3 407.917776 1220.7315 NaN NaN NaN NaN NaN NaN NaN 27.521 1 25.766 25.266 26.266 -1.7552 0 0 0 0.22632 1 4611 4611 8.4443 0 1 29303 826 19625 19633 28857 28857 0.12996357007227743 LTHNVFGHL 9 Unmodified _LTHNVFGHL_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2777709960938 2 519.279983 1036.54541 -0.53164 -0.00027607 1.9871 0.0010318 1.4554 0.00075577 519.2795264952623 83.828 1.0273 79.919 79.465 80.492 -3.9093 131 28 7 0 0 0 0.64382 1 15923 15923 10.074 0 1 124360000 + 29304 14067 19626 19634 28858 28858 0.028602958829424097 LTHNVFGHL 9 Unmodified _LTHNVFGHL_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 519.279983 1036.54541 -0.23305 -0.00012102 1.2998 0.00067496 1.0668 0.00055394 519.2792317466032 83.59 1.8794 79.982 79.059 80.939 -3.6079 0.019065 -0.0004454 NaN 10.074 172 53 6 NaN NaN NaN NaN 0 NaN NaN 0 140990000 + 29305 14067 19626 19634 0.028602958829424097 LTHNVFGHL 9 Unmodified _LTHNVFGHL_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 519.279983 1036.54541 -0.53164 -0.00027607 1.9871 0.0010318 1.4554 0.00075577 519.2795264952623 83.828 1.0273 79.919 79.465 80.492 -3.9093 -0.044667 0.00026836 NaN 10.074 131 28 7 NaN NaN NaN NaN 0 NaN NaN 0 124360000 + 29306 14067 19626 19634 0.028602958829424097 LTHNVFGHL 9 Unmodified _LTHNVFGHL_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 519.279983 1036.54541 -0.028464 -1.4781E-05 2.0699 0.0010748 2.0414 0.0010601 519.2793153848455 83.687 1.1509 79.989 79.422 80.573 -3.6985 0.025602 0.00035436 NaN 10.074 123 32 5 NaN NaN NaN NaN 0 NaN NaN 0 132870000 + 29307 14067 19626 19634 0.028602958829424097 LTHPPAHT 8 Unmodified _LTHPPAHT_ 0 0 0 REV__ENST00000381470.7_1_8:21939427-21939874:+|nuORF REV__ENST00000381470.7_1_8:21939427-21939874:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2311096191406 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 57.001 1 53.812 53.312 54.312 -3.1895 0 0 0 0.22934 1 10575 10575 0.063987 0 1 + 29308 21168 19627 19635 28859 28859 0.009123624117478357 LTHPPAHT 8 Unmodified _LTHPPAHT_ 0 0 0 REV__ENST00000381470.7_1_8:21939427-21939874:+|nuORF REV__ENST00000381470.7_1_8:21939427-21939874:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2311096191406 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 57.028 1 53.839 53.339 54.339 -3.1895 0 0 0 0.087131 1 10580 10580 46.921 6.4723 1 + 29309 21168 19627 19635 28860 28860 0.009123624117478357 LTHPTTSDLP 10 Unmodified _LTHPTTSDLP_ 0 0 0 REV__ENST00000526183.5_1_8:145725999-145727283:+|nuORF REV__ENST00000526183.5_1_8:145725999-145727283:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2789306640625 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 49.588 1 46.707 46.207 47.207 -2.8811 0 0 0 0.22583 1 9394 9394 13.906 0 1 + 29310 17444 19628 19636 28861 28861 0.008088313724329055 LTHYSPNSY 9 Unmodified _LTHYSPNSY_ 0 0 0 REV__ENST00000469390.5_1_1:156877911-156884587:+|nuORF REV__ENST00000469390.5_1_1:156877911-156884587:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26318359375 2 541.251089 1080.48762 0.12131 6.5661E-05 -0.14299 -7.7392E-05 -0.021672 -1.173E-05 541.2508773288349 48.611 0.93756 45.742 45.345 46.283 -2.869 103 26 5 0 0 0 0.6329 1 9137 9137 10.824 0 1 38894000 + 29311 19111 19629 19637 28862 28862 -0.04940010833138331 LTIFEKITT 9 Unmodified _LTIFEKITT_ 0 0 0 REV__nc|ENSG00000249730|P0C629|OR10J4 REV__nc|ENSG00000249730|P0C629|OR10J4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27734375 2 533.313158 1064.61176 NaN NaN NaN NaN NaN NaN NaN 148.31 1 143.25 142.75 143.75 -5.0595 0 0 0 0.19636 1 28724 28724 2.4985 0 1 + 29312 24292 19630 19638 28863 28863 0.08204066934331422 LTILDDTQY 9 Unmodified _LTILDDTQY_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2736206054688 2 541.274229 1080.53391 0.27303 0.00014779 0.062023 3.3572E-05 0.33506 0.00018136 541.2740354629285 98.805 0.56519 94.536 94.192 94.757 -4.2692 52 15 4 0 0 0 0.60805 1 18844 18844 12.532 0 1 17085000 29313 4208 19631 19639 28864 28864 -0.0031399072170188447 LTILDDTQY 9 Unmodified _LTILDDTQY_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27490234375 2 541.274229 1080.53391 0.20294 0.00010985 -0.015037 -8.1392E-06 0.1879 0.00010171 541.2740571188353 98.453 0.60281 94.497 94.127 94.73 -3.9564 57 17 4 0 0 0 0.34815 1 18844 18844 0.40827 0 1 17668000 29314 4208 19631 19639 28865 28865 -0.0031399072170188447 LTILELLIL 9 Unmodified _LTILELLIL_ 0 0 0 REV__ENST00000494792.1_1_10:126463275-126477652:-|nuORF REV__ENST00000494792.1_1_10:126463275-126477652:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 521.1763305664062 2 520.851919 1039.68928 0.36088 0.00018796 3.4094 0.0017758 3.7702 0.0019637 521.357027171354 146.04 0.10605 141.04 140.98 141.09 -5 4 2 2 0 0 0 0.87888 1 28259 28259 4.756 0 1 882290 + 29315 22370 19632 19640 28866 28866 0.1710270487053549 LTKAKEPS 8 Unmodified _LTKAKEPS_ 0 0 0 REV__ENSG00000100285|ENST00000310624|NEFH REV__ENSG00000100285|ENST00000310624|NEFH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21490478515625 2 437.255643 872.496732 0.24043 0.00010513 -0.097997 -4.285E-05 0.14243 6.228E-05 437.25554187369295 72.379 0.686 68.751 68.371 69.057 -3.6275 39 18 3 0 0 0 0.58903 1 13707 13707 16.942 0 1 4497400 + 29316 14684 19633 19641 28867 28867 0.05538382523184282 LTKAKLHIKK 10 Unmodified _LTKAKLHIKK_ 0 0 0 nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1 nc|ENSG00000059728|Q05195-2|MXD1 nc|ENSG00000059728|Q05195-2|MXD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2698974609375 2 590.400433 1178.78631 NaN NaN NaN NaN NaN NaN NaN 156.74 1 151.46 150.96 151.96 -5.2854 0 0 0 0.22588 1 30409 30409 2.4985 1.0166 1 29317 1300 19634 19642 28868 28868 0.20407111870144945 LTKAKLHIKK 10 Unmodified _LTKAKLHIKK_ 0 0 0 nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1 nc|ENSG00000059728|Q05195-2|MXD1 nc|ENSG00000059728|Q05195-2|MXD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2521362304688 2 590.400433 1178.78631 NaN NaN NaN NaN NaN NaN NaN 156.62 1 151.35 150.85 151.85 -5.2712 0 0 0 0.22588 1 30377 30377 1.1933 0 1 29318 1300 19634 19642 28869 28869 0.20407111870144945 LTKELDFD 8 Unmodified _LTKELDFD_ 0 0 0 REV__GYS2|p.K403Nfs*7|1|0.18|ENSG00000111713|chr12:21559671-21559671|T/-|frameshift_variant REV__GYS2|p.K403Nfs*7|1|0.18|ENSG00000111713|chr12:21559671-21559671|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25482177734375 2 490.75039 979.486227 -0.11706 -5.7449E-05 0.90241 0.00044286 0.78534 0.00038541 490.75072549728156 109.56 0.94566 105.1 104.71 105.66 -4.4518 74 26 4 0 0 0 0.91917 1 21113 21113 14.838 5.4908 1 4341100 + 29319 15259 19635 19643 28870 28870 -0.004336449219181304 LTKGLRTM 8 Unmodified _LTKGLRTM_ 0 0 0 DZIP1|p.E777Kfs*6|2|0.22|ENSG00000134874|chr13:95586027-95586027|T/-|frameshift_variant;DZIP1|p.K806Nfs*22|1|0.34|ENSG00000134874|chr13:95584842-95584842|T/-|frameshift_variant;nc|ENSG00000134874|Q86YF9-2|DZIP1;ENSG00000134874|ENST00000376829|DZIP1 DZIP1|p.E777Kfs*6|2|0.22|ENSG00000134874|chr13:95586027-95586027|T/-|frameshift_variant DZIP1|p.E777Kfs*6|2|0.22|ENSG00000134874|chr13:95586027-95586027|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.233154296875 2 460.273312 918.532072 NaN NaN NaN NaN NaN NaN NaN 90.066 1 90.066 89.566 90.566 0 0 0 0 0.23664 1 17595 17595 0.62683 0 1 29320 905 19636 19644 28871 28871 0.06954721779356987 LTKKKKKKKG 10 Unmodified _LTKKKKKKKG_ 0 0 0 REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 593.8876953125 2 593.921532 1185.82851 NaN NaN NaN NaN NaN NaN NaN 166.61 1 166.61 166.11 167.11 0 0 0 0 2.8426 1 33959 33959 0.0013812 0 1 + 29321 20383 19637 19645 28872 28872 0.24303087278553903 LTKRKRLHK 9 Unmodified _LTKRKRLHK_ 0 0 0 REV__ENST00000487890.5_1_7:23286476-23290466:+|nuORF REV__ENST00000487890.5_1_7:23286476-23290466:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2600708007812 2 590.393474 1178.77239 NaN NaN NaN NaN NaN NaN NaN 104.35 1 100.13 99.634 100.63 -4.2183 0 0 0 0.23508 1 20525 20525 4.3292 0.38484 1 + 29322 22264 19638 19646 28873 28873 0.19015879161725024 LTLALFKL 8 Unmodified _LTLALFKL_ 0 0 0 REV__nc|ENSG00000139278|P48060-2|GLIPR1 REV__nc|ENSG00000139278|P48060-2|GLIPR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2388610839844 2 459.804771 917.59499 -0.085953 -3.9522E-05 0.43725 0.00020105 0.35129 0.00016153 459.8048901667238 63.29 0.52261 63.29 62.945 63.468 0 21 14 2 0 0 0 0.89225 1 12202 12202 6.2058 0 1 1004200 + 29323 24067 19639 19647 28874 28874 0.13289610839046873 LTLALFKL 8 Unmodified _LTLALFKL_ 0 0 0 REV__nc|ENSG00000139278|P48060-2|GLIPR1 REV__nc|ENSG00000139278|P48060-2|GLIPR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.804771 917.59499 -0.10429 -4.7955E-05 0.70801 0.00032554 0.60371 0.00027759 459.8049138764207 66.544 0.4527 63.436 63.129 63.582 -3.1086 0.072533 0.00013351 NaN 6.2058 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1310100 + 29324 24067 19639 19647 0.13289610839046873 LTLALIGF 8 Unmodified _LTLALIGF_ 0 0 0 REV__nc|ENSG00000000005|Q9H2S6-2|TNMD REV__nc|ENSG00000000005|Q9H2S6-2|TNMD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 424.2694396972656 2 424.268022 846.521491 NaN NaN NaN NaN NaN NaN NaN 153.91 1 148.69 148.19 149.19 -5.2209 0 0 0 0.21486 1 29834 29834 5.7604 0 1 + 29325 13817 19640 19648 28875 28875 0.09209062396575973 LTLHDPHP 8 Unmodified _LTLHDPHP_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2450866699219 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 107.54 1 107.54 107.04 108.04 0 0 0 0 0.23025 1 21146 21146 0.62683 0 1 29326 6771 19641 19649 28876 28876 0.009566315832330474 LTLIKKKKK 9 Unmodified _LTLIKKKKK_ 0 0 0 ENST00000471326.5_1_1:154245614-154245674:+|nuORF ENST00000471326.5_1_1:154245614-154245674:+|nuORF ENST00000471326.5_1_1:154245614-154245674:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 367.458740234375 3 367.269027 1098.78525 NaN NaN NaN NaN NaN NaN NaN 33.797 1 33.797 33.297 34.297 0 0 0 0 0.19635 1 6177 6177 0 0 1 29327 10209 19642 19650 28877 28877 0.23980897501246545 LTLIKKKKK 9 Unmodified _LTLIKKKKK_ 0 0 0 ENST00000471326.5_1_1:154245614-154245674:+|nuORF ENST00000471326.5_1_1:154245614-154245674:+|nuORF ENST00000471326.5_1_1:154245614-154245674:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.26898193359375 3 367.269027 1098.78525 NaN NaN NaN NaN NaN NaN NaN 173.19 1 168.29 167.79 168.79 -4.8977 0 0 0 0.23508 1 34381 34381 0 0 1 29328 10209 19642 19650 28878 28878 0.23980897501246545 LTLLLLAIFKK 11 Unmodified _LTLLLLAIFKK_ 0 0 0 ENST00000555867.1_1_14:73673029-73685994:+|nuORF;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1 ENST00000555867.1_1_14:73673029-73685994:+|nuORF ENST00000555867.1_1_14:73673029-73685994:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 636.9780883789062 2 636.936317 1271.85808 NaN NaN NaN NaN NaN NaN NaN 172.99 1 172.99 172.49 173.49 0 0 0 0 0.23698 1 35743 35743 1.1933 1.1933 1 29329 1618 19643 19651 28879 28879 0.23302606504012147 LTLLMFTLL 9 Unmodified _LTLLMFTLL_ 0 0 0 tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1 tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1 tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2872924804688 2 532.824846 1063.63514 NaN NaN NaN NaN NaN NaN NaN 164.41 1 159.36 158.86 159.86 -5.0446 0 0 0 0.12288 1 32059 32059 34.102 5.6156 1 29330 26299 19644 19652 28880 28880 0.1058678944730218 LTLNLVHP 8 Unmodified _LTLNLVHP_ 0 0 0 REV__nc|ENSG00000197959|Q9UQ16-4|DNM3 REV__nc|ENSG00000197959|Q9UQ16-4|DNM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.758544921875 2 453.774003 905.533452 0.6954 0.00031555 -0.40074 -0.00018185 0.29465 0.00013371 453.7737603212464 105.84 0.79551 101.75 101.43 102.23 -4.0913 52 22 3 0 0 0 8448 1 20400 20400 1.7423 0 1 6556800 + 29331 19378 19645 19653 28881 28881 0.07690679139761869 LTLPEFYQA 9 Unmodified _LTLPEFYQA_ 0 0 0 REV__ENSG00000137076|ENST00000314888|TLN1 REV__ENSG00000137076|ENST00000314888|TLN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2803344726562 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 59.62 1 56.396 55.896 56.896 -3.2237 0 0 0 0.1599 1 11140 11140 29.082 2.8134 1 + 29332 16374 19646 19654 28882 28882 0.012109208661513549 LTLRKKRHV 9 Unmodified _LTLRKKRHV_ 0 0 0 REV__ENST00000447263.1_1_1:39980824-39982159:+|nuORF REV__ENST00000447263.1_1_1:39980824-39982159:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3347778320312 2 575.880199 1149.74584 0.04329 2.493E-05 -2.2247 -0.0012812 -2.1814 -0.0012562 575.8782462703685 141.15 0.27782 136.5 136.3 136.58 -4.6493 9 7 2 0 0 0 0.79297 1 27837 27837 2.0598 0 1 1290400 + 29333 21767 19647 19655 28883 28883 0.17696190270407897 LTLSERKKLGE 11 Unmodified _LTLSERKKLGE_ 0 0 0 REV__ALCAM|p.G535Wfs*33|1|0.3|ENSG00000170017|chr3:105552521-105552522|-/T|frameshift_variant;REV__nc|ENSG00000170017|Q13740-4|ALCAM REV__nc|ENSG00000170017|Q13740-4|ALCAM MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25311279296875 3 425.253993 1272.74015 NaN NaN NaN NaN NaN NaN NaN 170.44 1 165.56 165.06 166.06 -4.873 0 0 0 0.23652 1 33727 33727 3.134 0.061696 1 + 29334 13003;18137 19648 19656 28884 28884 0.11469002177409493 LTLVLLIK 8 Unmodified _LTLVLLIK_ 0 0 0 SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant;ENSG00000007908|ENST00000333360|SELE SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.8774108886719 3 304.887923 911.64194 NaN NaN NaN NaN NaN NaN NaN 9.3597 1 8.3251 7.8251 8.8251 -1.0347 0 0 0 0.21486 1 950 950 0 0 1 29335 1029 19649 19657 28885 28885 0.18258470390196635 LTLVVWWL 8 Unmodified _LTLVVWWL_ 0 0 0 ENST00000296666.12_1_5:126883515-126883566:+|nuORF REV__ENSG00000111432|ENST00000229030|FZD10 REV__ENSG00000111432|ENST00000229030|FZD10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.8356628417969 3 343.875906 1028.60589 NaN NaN NaN NaN NaN NaN NaN 19.272 1 19.272 18.772 19.772 0 0 0 0 0.21486 1 3143 3143 1.6526 0 1 29336 15245 19650 19658 28886 28886 0.0927301321332834 LTMEEDMTL 9 Unmodified _LTMEEDMTL_ 0 0 0 REV__ENST00000395468.8_1_14:55530029-55531448:+|nuORF REV__ENST00000395468.8_1_14:55530029-55531448:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2799682617188 2 541.74085 1081.46715 0.44319 0.00024009 2.7371 0.0014828 3.1803 0.0017229 541.7425887077612 121.96 0.35721 117.41 117.21 117.56 -4.5476 14 9 2 0 0 0 0.74655 1 23998 23998 15.847 8.558 1 1421500 + 29337 21263 19651 19659 28887 28887 -0.0703268559946082 LTMETGKPHK 10 Unmodified _LTMETGKPHK_ 0 0 0 ENST00000486685.2_1_7:128807724-128808099:+|nuORF ENST00000486685.2_1_7:128807724-128808099:+|nuORF ENST00000486685.2_1_7:128807724-128808099:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2089538574219 3 381.205986 1140.59613 NaN NaN NaN NaN NaN NaN NaN 178.59 1 173.68 173.18 174.18 -4.9088 0 0 0 0.22588 1 35628 35628 1.9064 0.83491 1 29338 10457 19652 19660 28888 28888 0.0314545714563792 LTMETGKPHK 10 Unmodified _LTMETGKPHK_ 0 0 0 ENST00000486685.2_1_7:128807724-128808099:+|nuORF ENST00000486685.2_1_7:128807724-128808099:+|nuORF ENST00000486685.2_1_7:128807724-128808099:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2044982910156 3 381.205986 1140.59613 NaN NaN NaN NaN NaN NaN NaN 178.62 1 173.71 173.21 174.21 -4.9088 0 0 0 0.22588 1 35633 35633 1.9064 0.83491 1 29339 10457 19652 19660 28889 28889 0.0314545714563792 LTMKKIFV 8 Unmodified _LTMKKIFV_ 0 0 0 ENST00000440547.1_1_2:175175288-175175501:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF ENST00000440547.1_1_2:175175288-175175501:-|nuORF ENST00000440547.1_1_2:175175288-175175501:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2591857910156 2 490.304081 978.59361 NaN NaN NaN NaN NaN NaN NaN 142.68 1 137.65 137.15 138.15 -5.0261 0 0 0 0.23899 1 27502 27502 1.3295 0.36726 1 29340 9885 19653 19661 28890 28890 0.10345653478646 LTMVIRWF 8 Unmodified _LTMVIRWF_ 0 0 0 REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|79|3|anti-sense REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|79|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26806640625 2 533.29933 1064.58411 NaN NaN NaN NaN NaN NaN NaN 124.13 1 119.54 119.04 120.04 -4.5926 0 0 0 0.22699 1 23888 23888 0.68139 0.42991 1 + 29341 24792 19654 19662 28891 28891 0.05439885193095506 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16461181640625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 125.58 1 125.58 125.08 126.08 0 0 0 0 0.23881 1 24767 24767 0.12286 0.049601 1 29342 8947 19655 19663 28892 28892 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650695800781 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 71.211 1 67.961 67.461 68.461 -3.2492 0 0 0 0.2386 1 13862 13862 0.12286 0 1 29343 8947 19655 19663 28893 28893 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650085449219 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 81.847 1 78.29 77.79 78.79 -3.557 0 0 0 0.2386 1 15992 15992 0.12286 0 1 29344 8947 19655 19663 28894 28894 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.164794921875 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 82.374 1 78.766 78.266 79.266 -3.6079 0 0 0 0.2386 1 16100 16100 0.12286 0 1 29345 8947 19655 19663 28895 28895 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1646423339844 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 85.884 1 82.157 81.657 82.657 -3.727 0 0 0 0.2386 1 16790 16790 0.12286 0 1 29346 8947 19655 19663 28896 28896 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16510009765625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 97.668 1 93.57 93.07 94.07 -4.0978 0 0 0 0.2386 1 19168 19168 0.12286 0 1 29347 8947 19655 19663 28897 28897 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1645812988281 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 81.934 1 78.094 77.594 78.594 -3.8392 0 0 0 0.2386 1 15560 15560 0.12286 0 1 29348 8947 19655 19663 28898 28898 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649169921875 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 82.633 1 78.76 78.26 79.26 -3.8736 0 0 0 0.2386 1 15703 15703 0.12286 0 1 29349 8947 19655 19663 28899 28899 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649169921875 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 82.852 1 78.979 78.479 79.479 -3.8736 0 0 0 0.2386 1 15736 15736 0.12286 0 1 29350 8947 19655 19663 28900 28900 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1651916503906 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 83.593 1 79.719 79.219 80.219 -3.8736 0 0 0 0.2386 1 15876 15876 0.12286 0 1 29351 8947 19655 19663 28901 28901 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648864746094 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 84.998 1 81.088 80.588 81.588 -3.9093 0 0 0 0.2386 1 16159 16159 0.12286 0 1 29352 8947 19655 19663 28902 28902 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 89.234 1 85.189 84.689 85.689 -4.0443 0 0 0 0.2386 1 17004 17004 0.12286 0 1 29353 8947 19655 19663 28903 28903 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1695861816406 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 89.291 1 85.247 84.747 85.747 -4.0443 0 0 0 0.2386 1 17013 17013 0.12286 0 1 29354 8947 19655 19663 28904 28904 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650085449219 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 91.896 1 87.801 87.301 88.301 -4.0946 0 0 0 0.2386 1 17502 17502 0.12286 0 1 29355 8947 19655 19663 28905 28905 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646423339844 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 94.981 1 90.789 90.289 91.289 -4.1911 0 0 0 0.2386 1 18125 18125 0.12286 0 1 29356 8947 19655 19663 28906 28906 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 128.6 1 123.78 123.28 124.28 -4.817 0 0 0 0.2396 1 24685 24685 0.12286 0 1 29357 8947 19655 19663 28907 28907 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649475097656 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 83.381 1 79.682 79.182 80.182 -3.6985 0 0 0 0.2386 1 15916 15916 0.12286 0 1 29358 8947 19655 19663 28908 28908 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650695800781 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 84.859 1 81.147 80.647 81.647 -3.7117 0 0 0 0.2386 1 16210 16210 0.12286 0 1 29359 8947 19655 19663 28909 28909 0.006916204142157767 LTMYKVSS 8 Unmodified _LTMYKVSS_ 0 0 0 ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF ENST00000354765.6_1_6:144269499-144281708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 101.81 1 97.792 97.292 98.292 -4.0212 0 0 0 0.2396 1 19564 19564 0.12286 0 1 29360 8947 19655 19663 28910 28910 0.006916204142157767 LTNGVTGVL 9 Unmodified _LTNGVTGVL_ 0 0 0 REV__ENSG00000182687|ENST00000329003|GALR2 REV__ENSG00000182687|ENST00000329003|GALR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2189025878906 2 437.255643 872.496732 -0.074116 -3.2408E-05 -0.11151 -4.8757E-05 -0.18562 -8.1165E-05 437.25548349767683 63.337 0.3366 60.34 60.151 60.488 -2.9975 12 9 2 0 0 0 0.45788 1 12261 12261 20.415 0 1 1176500 + 29361 18796 19656 19664 28911 28911 0.05538382523195651 LTNKKTTT 8 Unmodified _LTNKKTTT_ 0 0 0 REV__ENSG00000110975|ENST00000228567|SYT10 REV__ENSG00000110975|ENST00000228567|SYT10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7652282714844 2 453.766374 905.518196 NaN NaN NaN NaN NaN NaN NaN 178.32 1 178.32 177.82 178.82 0 0 0 0 0.21486 1 36942 36942 2.3027 0 1 + 29362 15225 19657 19665 28912 28912 0.06165767551885892 LTNVSFEMTH 10 Unmodified _LTNVSFEMTH_ 0 0 0 nc|ENSG00000147082|Q8WWL7-2|CCNB3 nc|ENSG00000147082|Q8WWL7-2|CCNB3 nc|ENSG00000147082|Q8WWL7-2|CCNB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.26025390625 2 589.779156 1177.54376 0.48851 0.00028811 -2.2972 -0.0013548 -1.8087 -0.0010667 590.2792822642095 164.21 0.57671 159.15 158.9 159.48 -5.0648 29 16 3 0 0 0 0.72406 1 31988 31988 8.7454 1.6437 1 14616000 29363 12374 19658 19666 28913 28913 -0.037911259879820136 LTPDFSACRAY 11 Unmodified _LTPDFSACRAY_ 0 0 0 nc|ENSG00000101546|Q8N0V3-2|RBFA;RBFA|p.R253Gfs*19|1|0.36|ENSG00000101546|chr18:80045877-80045877|A/-|frameshift_variant;ENSG00000101546|ENST00000306735|RBFA nc|ENSG00000101546|Q8N0V3-2|RBFA nc|ENSG00000101546|Q8N0V3-2|RBFA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.780517578125 2 622.29243 1242.57031 0.33985 0.00021149 -1.7874 -0.0011123 -1.4476 -0.00090081 622.2909546235594 86.595 0.70126 86.595 86.245 86.946 0 31 19 3 0 0 0 0.75285 1 16880 16880 8.1555 1.4324 1 2487500 29364 2074 19659 19667 28914 28914 -0.04127437096644826 LTPDTQYEFQ 10 Unmodified _LTPDTQYEFQ_ 0 0 0 IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7599487304688 2 621.287868 1240.56118 0.26777 0.00016636 0.38174 0.00023717 0.64952 0.00040354 621.2879520487842 95.579 0.96904 95.579 95.076 96.045 0 50 27 3 0 0 0 0.74842 1 18696 18696 6.2058 0 1 3210500 29365 1968 19660 19668 28915 28915 -0.04947507181327637 LTPDTQYEFQ 10 Unmodified _LTPDTQYEFQ_ 0 0 0 IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.76708984375 2 621.287868 1240.56118 0.99296 0.00061691 -0.67061 -0.00041664 0.32235 0.00020027 621.287392344136 101.33 2.4645 97.167 95.693 98.157 -4.1594 132 70 4 0 0 0 0.6817 1 19882 19882 13.042 2.9685 1 7587800 29366 1968 19660 19668 28916 28916 -0.04947507181327637 LTPDTQYEFQ 10 Unmodified _LTPDTQYEFQ_ 0 0 0 IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7819213867188 2 621.287868 1240.56118 0.29439 0.0001829 0.36251 0.00022523 0.6569 0.00040813 622.2915613739318 92.264 0.57906 88.456 88.14 88.719 -3.8083 44 16 5 0 0 0 0.67319 1 17675 17675 13.906 1.3745 1 2862200 29367 1968 19660 19668 28917 28917 -0.04947507181327637 LTPDTQYEFQ 10 Unmodified _LTPDTQYEFQ_ 0 0 0 IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 621.287868 1240.56118 0.39143 0.00024319 -0.18829 -0.00011698 0.20315 0.00012621 621.2877235174439 96.993 2.2842 96.993 96.011 98.295 0 -0.10833 0.00025694 NaN 13.042 128 65 3 NaN NaN NaN NaN 0 NaN NaN 0 9642000 29368 1968 19660 19668 -0.04947507181327637 LTPDTQYEFQ 10 Unmodified _LTPDTQYEFQ_ 0 0 0 IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 621.287868 1240.56118 0.99987 0.00062121 -0.95014 -0.00059031 0.049731 3.0897E-05 621.2876842148447 99.751 0.49078 95.618 95.338 95.829 -4.1326 -0.051893 -0.0011884 NaN 6.2058 24 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2253900 29369 1968 19660 19668 -0.04947507181327637 LTPDTQYEFQ 10 Unmodified _LTPDTQYEFQ_ 0 0 0 IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 621.287868 1240.56118 0.55058 0.00034207 -0.3342 -0.00020763 0.21638 0.00013443 621.2875825551625 101.43 1.7136 97.114 95.758 97.471 -4.3208 0.012711 7.5637E-05 NaN 13.042 92 49 3 NaN NaN NaN NaN 0 NaN NaN 0 6348800 29370 1968 19660 19668 -0.04947507181327637 LTPDTQYEFQ 10 Unmodified _LTPDTQYEFQ_ 0 0 0 IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 621.287868 1240.56118 0.56447 0.0003507 -0.36622 -0.00022753 0.19825 0.00012317 621.2875876669694 101.12 1.6585 97.13 95.937 97.595 -3.9895 0.029144 3.5845E-05 NaN 13.042 107 47 3 NaN NaN NaN NaN 0 NaN NaN 0 6713800 29371 1968 19660 19668 -0.04947507181327637 LTPDTQYEFQ 10 Unmodified _LTPDTQYEFQ_ 0 0 0 IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 621.287868 1240.56118 0.42951 0.00026685 0.14772 9.1775E-05 0.57723 0.00035862 621.2880480145969 99.769 1.0684 95.813 95.106 96.175 -3.9564 0.14274 0.00017581 NaN 6.2058 41 30 2 NaN NaN NaN NaN 0 NaN NaN 0 1989500 29372 1968 19660 19668 -0.04947507181327637 LTPDYSMESH 10 Unmodified _LTPDYSMESH_ 0 0 0 ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3;ENST00000478085.5_1_22:40802939-40803686:+|nuORF;ENST00000470518.5_1_22:40803281-40805023:+|nuORF ENSG00000100359|ENST00000248929|SGSM3 ENSG00000100359|ENST00000248929|SGSM3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2525024414062 2 590.252971 1178.49139 NaN NaN NaN NaN NaN NaN NaN 167.78 1 162.83 162.33 163.33 -4.948 0 0 0 0.22588 1 33038 33038 8.7454 1.4562 1 29373 1964 19661 19669 28918 28918 -0.0907170912159927 LTPEEEAQY 9 Unmodified _LTPEEEAQY_ 0 0 0 ENSG00000178372|ENST00000380332|CALML5 ENSG00000178372|ENST00000380332|CALML5 ENSG00000178372|ENST00000380332|CALML5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2647705078125 2 540.248212 1078.48187 0.22892 0.00012367 -0.12564 -6.7878E-05 0.10328 5.5795E-05 540.2480873839723 98.221 1.2163 94.088 93.358 94.574 -4.1326 68 34 3 0 0 0 0.60805 1 19240 19240 12.532 1.7076 1 4555300 29374 6576 19662 19670 28919 28919 -0.05423154135473851 LTPEEEAQY 9 Unmodified _LTPEEEAQY_ 0 0 0 ENSG00000178372|ENST00000380332|CALML5 ENSG00000178372|ENST00000380332|CALML5 ENSG00000178372|ENST00000380332|CALML5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2631225585938 2 540.248212 1078.48187 0.29418 0.00015893 0.28045 0.00015151 0.57463 0.00031044 540.2480851300288 98.2 1.1154 93.93 93.463 94.578 -4.2692 66 31 3 0 0 0 0.60805 1 18786 18786 12.532 1.7076 1 4695500 29375 6576 19662 19670 28920 28920 -0.05423154135473851 LTPHRPGQG 9 Unmodified _LTPHRPGQG_ 0 0 0 ENST00000505317.1_1_4:16192911-16193136:-|nuORF ENST00000505317.1_1_4:16192911-16193136:-|nuORF ENST00000505317.1_1_4:16192911-16193136:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2466735839844 2 481.761958 961.509363 0.012525 6.034E-06 -0.6277 -0.0003024 -0.61518 -0.00029637 481.7612995783117 67.02 0.63268 63.911 63.685 64.318 -3.1086 23 17 2 0 0 0 0.80521 1 12961 12961 6.7232 6.7232 1 1066200 29376 10670 19663 19671 28921 28921 0.02706838706092185 LTPIVPVQLTY 11 Unmodified _LTPIVPVQLTY_ 0 0 0 REV__ENST00000222573.4_1_7:20449902-20450115:+|nuORF REV__ENST00000222573.4_1_7:20449902-20450115:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7618408203125 2 622.368464 1242.72238 NaN NaN NaN NaN NaN NaN NaN 99.547 1 95.277 94.777 95.777 -4.2692 0 0 0 0.23018 1 19031 19031 8.1555 1.9497 1 + 29377 20036 19664 19672 28922 28922 0.11072286922558305 LTPLFSLSG 9 Unmodified _LTPLFSLSG_ 0 0 0 ENST00000576846.1_1_17:7530144-7530450:-|nuORF ENST00000576846.1_1_17:7530144-7530450:-|nuORF ENST00000576846.1_1_17:7530144-7530450:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.1753234863281 3 312.179654 933.517133 NaN NaN NaN NaN NaN NaN NaN 95.987 1 91.937 91.437 92.437 -4.0496 0 0 0 0.23508 1 18818 18818 2.4985 0.21571 1 29378 11463 19665 19673 28923 28923 0.047715531829908286 LTPLLLIIVSY 11 Unmodified _LTPLLLIIVSY_ 0 0 0 OR13C5|p.T246Rfs*4|1|0.03|ENSG00000277556|chr9:104598679-104598680|-/TT|frameshift_variant;ENSG00000277556|ENST00000374779|OR13C5;ENSG00000276119|ENST00000542196|OR13C2 OR13C5|p.T246Rfs*4|1|0.03|ENSG00000277556|chr9:104598679-104598680|-/TT|frameshift_variant OR13C5|p.T246Rfs*4|1|0.03|ENSG00000277556|chr9:104598679-104598680|-/TT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.78173828125 2 622.896857 1243.77916 NaN NaN NaN NaN NaN NaN NaN 95.075 1 91.194 90.694 91.694 -3.881 0 0 0 0.23634 1 18241 18241 3.2813 0.28607 1 29379 8029 19666 19674 28924 28924 0.167023344791005 LTPNQPKEEL 10 Unmodified _LTPNQPKEEL_ 0 0 0 REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1 REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.2485046386719 3 390.211794 1167.61355 NaN NaN NaN NaN NaN NaN NaN 106.87 1 102.74 102.24 103.24 -4.135 0 0 0 0.22588 1 20550 20550 1.7423 0 1 + 29380 25097 19667 19675 28925 28925 0.03645075952294974 LTPPRSPPP 9 Unmodified _LTPPRSPPP_ 0 0 0 REV__ENST00000336665.9_1_2:237032783-237033149:+|nuORF REV__ENST00000336665.9_1_2:237032783-237033149:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76580810546875 2 481.276909 960.539266 -0.24277 -0.00011684 0.50743 0.00024421 0.26466 0.00012737 481.277128205733 57.277 1.9408 57.277 56.536 58.477 0 96 55 2 0 0 0 0.62314 1 11103 11103 11.495 2.1116 1 1919100 + 29381 20666 19668 19676 28926 28926 0.05741777651417124 LTPREAAATYG 11 Unmodified _LTPREAAATYG_ 0 0 0 ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3359985351562 2 575.29857 1148.58259 -0.0084499 -4.8612E-06 0.15715 9.041E-05 0.1487 8.5549E-05 575.2986779616912 58.634 0.96843 58.634 58.105 59.074 0 86 27 5 0 0 0 0.57511 1 11179 11179 19.362 2.249 1 136770000 29382 7544 19669 19677 28927 28927 0.014239226380368564 LTPREAAATYG 11 Unmodified _LTPREAAATYG_ 0 0 0 ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3126831054688 2 575.29857 1148.58259 0.01946 1.1196E-05 -0.10564 -6.0777E-05 -0.086183 -4.9581E-05 575.2985188039759 61.559 0.83476 58.598 58.14 58.974 -2.9614 82 23 5 0 0 0 0.57511 1 11815 11815 19.362 8.5624 1 86247000 29383 7544 19669 19677 28928 28928 0.014239226380368564 LTPRKGRILKP 11 Unmodified _LTPRKGRILKP_ 0 0 0 ENST00000296028.3_1_4:74852930-74853077:-|nuORF ENST00000296028.3_1_4:74852930-74853077:-|nuORF ENST00000296028.3_1_4:74852930-74853077:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 639.9241333007812 2 639.922064 1277.82957 NaN NaN NaN NaN NaN NaN NaN 54.21 1 51.072 50.572 51.572 -3.1377 0 0 0 0.23698 1 10026 10026 1.3295 0 1 29384 8503 19670 19678 28929 28929 0.2017730164745899 LTPVDPAEPQ 10 Unmodified _LTPVDPAEPQ_ 0 0 0 nc|ENSG00000088899|O60299-2|LZTS3;ENSG00000088899|ENST00000337576|LZTS3 nc|ENSG00000088899|O60299-2|LZTS3 nc|ENSG00000088899|O60299-2|LZTS3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.07861328125 3 356.185356 1065.53424 0.31214 0.00011118 -0.36183 -0.00012888 -0.049693 -1.77E-05 356.18517411873785 30.986 0.34988 28.96 28.707 29.057 -2.0264 18 9 2 0 0 0 0.91149 1 5348 5348 1.7423 0 1 1337000 29385 1740 19671 19679 28930 28930 0.004094289981367183 LTPVDPAEPQ 10 Unmodified _LTPVDPAEPQ_ 0 0 0 nc|ENSG00000088899|O60299-2|LZTS3;ENSG00000088899|ENST00000337576|LZTS3 nc|ENSG00000088899|O60299-2|LZTS3 nc|ENSG00000088899|O60299-2|LZTS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 356.185356 1065.53424 0.09686 3.45E-05 -0.19761 -7.0387E-05 -0.10075 -3.5887E-05 356.18525431510926 31.095 0.41926 28.979 28.719 29.138 -2.1167 0.011813 -9.4609E-05 NaN 1.7423 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1730700 29386 1740 19671 19679 0.004094289981367183 LTPVDPAEPQ 10 Unmodified _LTPVDPAEPQ_ 0 0 0 nc|ENSG00000088899|O60299-2|LZTS3;ENSG00000088899|ENST00000337576|LZTS3 nc|ENSG00000088899|O60299-2|LZTS3 nc|ENSG00000088899|O60299-2|LZTS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 356.185356 1065.53424 -0.17298 -6.1612E-05 0.2285 8.139E-05 0.055525 1.9777E-05 356.1853990286081 31.036 0.38635 28.962 28.779 29.165 -2.0743 -0.004633 0.00036072 NaN 1.7423 20 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1512900 29387 1740 19671 19679 0.004094289981367183 LTQEQKKELS 10 Unmodified _LTQEQKKELS_ 0 0 0 ENSG00000136872|ENST00000647789|ALDOB ENSG00000136872|ENST00000647789|ALDOB ENSG00000136872|ENST00000647789|ALDOB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2896118164062 2 602.33261 1202.65067 NaN NaN NaN NaN NaN NaN NaN 123.78 1 119.05 118.55 119.55 -4.731 0 0 0 0.22588 1 23774 23774 8.1555 0 1 29388 4046 19672 19680 28931 28931 0.057447474980335755 LTQGWDEAQ 9 Unmodified _LTQGWDEAQ_ 0 0 0 ENST00000412397.2_1_1:998916-999914:+|nuORF ENST00000412397.2_1_1:998916-999914:+|nuORF ENST00000412397.2_1_1:998916-999914:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6866455078125 2 524.240721 1046.46689 -0.42226 -0.00022137 0.35287 0.00018499 -0.069387 -3.6375E-05 524.2408372437088 40.02 0.46002 37.47 37.206 37.666 -2.5491 18 12 2 0 0 0 0.81703 1 7409 7409 10.074 10.074 1 1068900 29389 9585 19673 19681 28932 28932 -0.054486012128108996 LTQGWDEAQ 9 Unmodified _LTQGWDEAQ_ 0 0 0 ENST00000412397.2_1_1:998916-999914:+|nuORF ENST00000412397.2_1_1:998916-999914:+|nuORF ENST00000412397.2_1_1:998916-999914:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 524.240721 1046.46689 -0.4894 -0.00025656 0.36035 0.00018891 -0.12905 -6.7651E-05 524.2409468961421 39.881 0.35439 37.341 37.143 37.498 -2.5398 -0.063076 0.00017075 NaN 10.074 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 614860 29390 9585 19673 19681 -0.054486012128108996 LTQGWDEAQ 9 Unmodified _LTQGWDEAQ_ 0 0 0 ENST00000412397.2_1_1:998916-999914:+|nuORF ENST00000412397.2_1_1:998916-999914:+|nuORF ENST00000412397.2_1_1:998916-999914:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.240721 1046.46689 0.17292 9.0651E-05 -0.30844 -0.0001617 -0.13552 -7.1045E-05 524.2407161324229 39.867 0.38123 37.401 37.187 37.568 -2.4653 -0.0030325 -0.00053046 NaN 10.074 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 785910 29391 9585 19673 19681 -0.054486012128108996 LTQKDRPRRWK 11 Unmodified _LTQKDRPRRWK_ 0 0 0 PRAMEF1|p.R140Kfs*23|1|0.27|ENSG00000116721|chr1:12794043-12794044|-/A|frameshift_variant;PRAMEF14|p.H283Afs*56|1|0.3|ENSG00000204481|chr1:13344057-13344058|-/C|frameshift_variant;ENSG00000204481|ENST00000334600|PRAMEF14;ENSG00000120952|ENST00000240189|PRAMEF2;ENSG00000116721|ENST00000332296|PRAMEF1 PRAMEF1|p.R140Kfs*23|1|0.27|ENSG00000116721|chr1:12794043-12794044|-/A|frameshift_variant PRAMEF1|p.R140Kfs*23|1|0.27|ENSG00000116721|chr1:12794043-12794044|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.39501953125 2 742.433858 1482.85316 NaN NaN NaN NaN NaN NaN NaN 178.03 1 173.24 172.74 173.74 -4.7898 0 0 0 0.22632 1 36421 36421 0.00056442 0.00056442 1 29392 2948 19674 19682 28933 28933 0.13105115413964086 LTQKRKRR 8 Unmodified _LTQKRKRR_ 0 0 0 ENST00000361114.9_1_10:74311095-74322750:-|nuORF ENST00000361114.9_1_10:74311095-74322750:-|nuORF ENST00000361114.9_1_10:74311095-74322750:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7766723632812 2 543.354348 1084.69414 0.55011 0.00029891 2.6431 0.0014361 3.1932 0.001735 543.8550612313337 162.52 0.16708 157.33 157.23 157.4 -5.1878 5 4 2 0 0 0 1.0262 1 31542 31542 4.3292 3.8709 1 5677100 29393 9021 19675 19683 28934 28934 0.15518446576515998 LTQLALPTA 9 Unmodified _LTQLALPTA_ 0 0 0 ENST00000515049.1_1_17:48016676-48017012:+|nuORF ENST00000515049.1_1_17:48016676-48017012:+|nuORF ENST00000515049.1_1_17:48016676-48017012:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2546691894531 2 464.279118 926.543683 0.0028155 1.3072E-06 0.013338 6.1924E-06 0.016153 7.4996E-06 464.27904376241236 95.231 0.87128 91.35 90.881 91.752 -3.881 57 24 3 0 0 0 0.54354 1 18324 18324 16.942 2.3606 1 6004600 29394 10780 19676 19684 28935 28935 0.07747242074322003 LTQNATLL 8 Unmodified _LTQNATLL_ 0 0 0 REV__nc|ENSG00000015520|Q9UHC9-3|NPC1L1 REV__nc|ENSG00000015520|Q9UHC9-3|NPC1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22723388671875 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 101.01 1 97.022 96.522 97.522 -3.9895 0 0 0 0.11793 1 19413 19413 42.095 3.9434 1 + 29395 13961 19677 19685 28936 28936 0.05538382523195651 LTQQHAEQ 8 Unmodified _LTQQHAEQ_ 0 0 0 REV__ENSG00000144821|ENST00000693548|MYH15;REV__MYH13|p.K1396Nfs*37|1|0.46|ENSG00000006788|chr17:10312751-10312751|T/-|frameshift_variant;REV__ENSG00000125414|ENST00000245503|MYH2 REV__ENSG00000125414|ENST00000245503|MYH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.738525390625 2 477.735606 953.456658 -0.16062 -7.6734E-05 -0.23725 -0.00011334 -0.39788 -0.00019008 477.7354459547916 25.092 0.72511 23.239 23.015 23.74 -1.8534 40 20 3 0 0 0 0.66265 1 4140 4140 18.135 0 1 13144000 + 29396 15813;23894;16805 19678 19686 28937 28937 -0.021931641473884156 LTQQITAKY 9 Unmodified _LTQQITAKY_ 0 0 0 REV__nc|ENSG00000176473|Q64LD2-2|WDR25 REV__nc|ENSG00000176473|Q64LD2-2|WDR25 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.28466796875 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 120.36 1 120.36 119.86 120.86 0 0 0 0 0.21065 1 23726 23726 20.454 4.6064 1 + 29397 18512 19679 19687 28938 28938 0.05690012131753974 LTQVSCKH 8 Unmodified _LTQVSCKH_ 0 0 0 REV__TRAF3|p.N285Kfs*13|1|0.37|ENSG00000131323|chr14:102897288-102897289|-/A|frameshift_variant REV__TRAF3|p.N285Kfs*13|1|0.37|ENSG00000131323|chr14:102897288-102897289|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2381896972656 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 56.42 1 53.244 52.744 53.744 -3.1761 0 0 0 0.21452 1 10497 10497 13.508 0 1 + 29398 16066 19680 19688 28939 28939 0.003732718485366604 LTRAEGKKY 9 Unmodified _LTRAEGKKY_ 0 0 0 ENST00000373570.8_1_9:127620199-127620799:-|nuORF ENST00000373570.8_1_9:127620199-127620799:-|nuORF ENST00000373570.8_1_9:127620199-127620799:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2839965820312 2 533.306198 1064.59784 0.44359 0.00023657 -0.05004 -2.6687E-05 0.39355 0.00020988 533.3057881598661 82.506 0.82115 78.633 78.231 79.052 -3.8736 63 23 3 0 0 0 0.55979 1 15621 15621 15.847 0 1 12169000 29399 9200 19681 19689 28940 28940 0.06812834225888764 LTRKRIRYRFR 11 Unmodified _LTRKRIRYRFR_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2;JAK2|p.P501Qfs*10|1|0.06|ENSG00000096968|chr9:5069193-5069193|C/-|frameshift_variant;JAK2|p.F556Lfs*12|1|0.35|ENSG00000096968|chr9:5072515-5072515|T/-|frameshift_variant ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2620849609375 3 522.32682 1563.95863 NaN NaN NaN NaN NaN NaN NaN 135.97 1 135.97 135.47 136.47 0 0 0 0 0.22632 1 26940 26940 0.00056442 0 1 29400 1879 19682 19690 28941 28941 0.1992107633022897 LTRKRIRYRFR 11 Unmodified _LTRKRIRYRFR_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2;JAK2|p.P501Qfs*10|1|0.06|ENSG00000096968|chr9:5069193-5069193|C/-|frameshift_variant;JAK2|p.F556Lfs*12|1|0.35|ENSG00000096968|chr9:5072515-5072515|T/-|frameshift_variant ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2756958007812 3 522.32682 1563.95863 NaN NaN NaN NaN NaN NaN NaN 161.01 1 155.78 155.28 156.28 -5.2299 0 0 0 0.22632 1 31267 31267 0.00056442 0 1 29401 1879 19682 19690 28942 28942 0.1992107633022897 LTRLLEEIH 9 Unmodified _LTRLLEEIH_ 0 0 0 ENSG00000182963|ENST00000592524|GJC1;ENSG00000198835|ENST00000366714|GJC2 ENSG00000182963|ENST00000592524|GJC1 ENSG00000182963|ENST00000592524|GJC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2215270996094 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 77.658 1 74.194 73.694 74.694 -3.4633 0 0 0 0.23508 1 15161 15161 5.2969 0.39987 1 29402 6822 19683 19691 28943 28943 0.08329389914410967 LTRPDITF 8 Unmodified _LTRPDITF_ 0 0 0 nc|ENSG00000160323|Q76LX8-3|ADAMTS13;ENSG00000160323|ENST00000355699|ADAMTS13;nc|ENSG00000160323|Q76LX8|ADAMTS13 nc|ENSG00000160323|Q76LX8-3|ADAMTS13 nc|ENSG00000160323|Q76LX8-3|ADAMTS13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76861572265625 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 83.897 1 83.897 83.397 84.397 0 0 0 0 0.20462 1 16357 16357 21.747 2.3076 1 29403 5250 19684 19692 28944 28944 0.040980714145121055 LTRRERRRLLR 11 Unmodified _LTRRERRRLLR_ 0 0 0 nc|ENSG00000165046|Q2VYF4-2|LETM2;ENSG00000165046|ENST00000379957|LETM2 nc|ENSG00000165046|Q2VYF4-2|LETM2 nc|ENSG00000165046|Q2VYF4-2|LETM2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 762.9841918945312 2 762.987124 1523.95969 NaN NaN NaN NaN NaN NaN NaN 167.21 1 162.26 161.76 162.76 -4.948 0 0 0 0.23698 1 32869 32869 2.4985 2.1915 1 29404 5590 19685 19693 28945 28945 0.21867290699151454 LTRVLPLLR 9 Unmodified _LTRVLPLLR_ 0 0 0 REV__BCL3|p.G320R|1|0.14|ENSG00000069399|chr19:44758312-44758312|G/A|missense_variant REV__BCL3|p.G320R|1|0.14|ENSG00000069399|chr19:44758312-44758312|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2762451171875 2 540.866226 1079.7179 0.57976 0.00031357 1.4377 0.00077763 2.0175 0.0010912 540.8671827561748 115.89 0.31052 111.53 111.42 111.74 -4.3585 11 8 2 0 0 0 0.64208 1 22338 22338 0.0033805 0 1 2130600 + 29405 13186 19686 19694 28946 28946 0.18122867290298927 LTSCMWLYY 9 Unmodified _LTSCMWLYY_ 0 0 0 REV__ENST00000472397.5_1_1:155226487-155230214:-|nuORF REV__ENST00000472397.5_1_1:155226487-155230214:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2643432617188 2 590.264296 1178.51404 0.35731 0.0002109 -1.3509 -0.00079737 -0.99356 -0.00058646 590.2639406619761 96.992 0.97495 96.992 96.598 97.573 0 79 27 4 0 0 0 0.44262 1 18951 18951 23.148 7.3012 1 10698000 + 29406 15483 19687 19695 28947 28947 -0.0680778125768029 LTSCMWLYY 9 Unmodified _LTSCMWLYY_ 0 0 0 REV__ENST00000472397.5_1_1:155226487-155230214:-|nuORF REV__ENST00000472397.5_1_1:155226487-155230214:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2491455078125 2 590.264296 1178.51404 0.71891 0.00042435 -1.3611 -0.00080341 -0.6422 -0.00037907 590.2637052703991 101.11 0.95608 96.81 96.398 97.354 -4.297 67 27 3 0 0 0 0.62102 1 19445 19445 11.64 0.81637 1 9383700 + 29407 15483 19687 19695 28948 28948 -0.0680778125768029 LTSEDLLYL 9 Unmodified _LTSEDLLYL_ 0 0 0 ENSG00000116039|ENST00000234396|ATP6V1B1 ENSG00000116039|ENST00000234396|ATP6V1B1 ENSG00000116039|ENST00000234396|ATP6V1B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2847900390625 2 533.786973 1065.55939 0.53806 0.00028721 0.47213 0.00025202 1.0102 0.00053922 533.7871180664728 159.87 0.64337 154.64 154.3 154.94 -5.2299 27 17 2 0 0 0 0.77732 1 31008 31008 18.135 6.4947 1 2100600 29408 2903 19688 19696 28949 28949 0.02923483800714166 LTSEKKTR 8 Unmodified _LTSEKKTR_ 0 0 0 REV__ENSG00000136002|ENST00000409359|ARHGEF4 REV__ENSG00000136002|ENST00000409359|ARHGEF4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78411865234375 2 481.785099 961.555644 NaN NaN NaN NaN NaN NaN NaN 164.88 1 159.82 159.32 160.32 -5.0648 0 0 0 0.23182 1 32185 32185 0.62683 0 1 + 29409 16306 19689 19697 28950 28950 0.07332858817517263 LTSFGPGWLD 10 Unmodified _LTSFGPGWLD_ 0 0 0 REV__ENST00000392623.5_1_1:153599623-153599692:-|nuORF REV__ENST00000392623.5_1_1:153599623-153599692:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7762451171875 2 546.771657 1091.52876 0.26309 0.00014385 0.04712 2.5764E-05 0.31021 0.00016961 546.7715444706994 99.554 0.64404 95.285 94.963 95.607 -4.2692 34 18 3 0 0 0 0.29353 1 18995 18995 37.974 6.7057 1 3054100 + 29410 21223 19690 19698 28951 28951 -0.013342497936491782 LTSFGPGWLD 10 Unmodified _LTSFGPGWLD_ 0 0 0 REV__ENST00000392623.5_1_1:153599623-153599692:-|nuORF REV__ENST00000392623.5_1_1:153599623-153599692:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.771657 1091.52876 0.26309 0.00014385 0.04712 2.5764E-05 0.31021 0.00016961 546.7715444706994 99.554 0.64404 95.285 94.963 95.607 -4.2692 0.036028 0.0002674 NaN 37.974 34 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3054100 + 29411 21223 19690 19698 -0.013342497936491782 LTSFGPGWLD 10 Unmodified _LTSFGPGWLD_ 0 0 0 REV__ENST00000392623.5_1_1:153599623-153599692:-|nuORF REV__ENST00000392623.5_1_1:153599623-153599692:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.771657 1091.52876 0.27172 0.00014857 0.043656 2.387E-05 0.31538 0.00017244 546.7715663305851 99.181 0.6562 95.224 94.899 95.555 -3.9564 -0.024383 0.00026361 NaN 37.974 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3353000 + 29412 21223 19690 19698 -0.013342497936491782 LTSFSQNATLY 11 Unmodified _LTSFSQNATLY_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7688598632812 2 622.81151 1243.60847 1.001 0.00062344 -0.78189 -0.00048697 0.21911 0.00013647 622.8110104658884 98.613 0.97079 94.48 93.987 94.957 -4.1326 92 27 5 0 0 0 0.57511 1 19450 19450 19.362 0.98885 1 48502000 29413 6631 19691 19699 28952 28952 -0.0035922791032589885 LTSGLKVYY 9 Unmodified _LTSGLKVYY_ 0 0 0 nc|ENSG00000165195|P37287-2|PIGA;ENSG00000165195|ENST00000333590|PIGA nc|ENSG00000165195|P37287-2|PIGA nc|ENSG00000165195|P37287-2|PIGA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.269775390625 2 522.292225 1042.5699 NaN NaN NaN NaN NaN NaN NaN 111.19 1 106.69 106.19 107.19 -4.4915 0 0 0 0.23508 1 21339 21339 11.64 5.0099 1 29414 5607 19692 19700 28953 28953 0.050315112458065414 LTSGLKVYY 9 Unmodified _LTSGLKVYY_ 0 0 0 nc|ENSG00000165195|P37287-2|PIGA;ENSG00000165195|ENST00000333590|PIGA nc|ENSG00000165195|P37287-2|PIGA nc|ENSG00000165195|P37287-2|PIGA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2793579101562 2 522.292225 1042.5699 NaN NaN NaN NaN NaN NaN NaN 111.2 1 106.71 106.21 107.21 -4.4915 0 0 0 0.23508 1 21342 21342 11.64 4.9171 1 29415 5607 19692 19700 28954 28954 0.050315112458065414 LTSKLLKEY 9 Unmodified _LTSKLLKEY_ 0 0 0 APPL1|p.R154Efs*6|1|0.31|ENSG00000157500|chr3:57242893-57242893|A/-|frameshift_variant;ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1 APPL1|p.R154Efs*6|1|0.31|ENSG00000157500|chr3:57242893-57242893|A/-|frameshift_variant APPL1|p.R154Efs*6|1|0.31|ENSG00000157500|chr3:57242893-57242893|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7698364257812 2 547.826432 1093.63831 NaN NaN NaN NaN NaN NaN NaN 162.24 1 157.45 156.95 157.95 -4.7898 0 0 0 0.23508 1 32278 32278 10.824 2.9138 1 29416 188 19693 19701 28955 28955 0.09523755825671287 LTSLALPASHL 11 Unmodified _LTSLALPASHL_ 0 0 0 ENST00000394071.6_2_14:74184720-74184954:-|nuORF ENST00000394071.6_2_14:74184720-74184954:-|nuORF ENST00000394071.6_2_14:74184720-74184954:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2226867675781 3 374.888763 1121.64446 0.27593 0.00010344 -0.52653 -0.00019739 -0.2506 -9.3946E-05 374.88852190944095 101.53 1.1576 101.53 101.01 102.17 0 90 32 4 0 0 0 0.76282 1 20020 20020 7.4771 0.37534 1 15151000 29417 9400 19694 19702 28956 28956 0.08850274057181196 LTSRGGQW 8 Unmodified _LTSRGGQW_ 0 0 0 REV__GRID2|p.M369T|1|0.12|ENSG00000152208|chr4:93224756-93224756|T/C|missense_variant REV__GRID2|p.M369T|1|0.12|ENSG00000152208|chr4:93224756-93224756|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 302.0165710449219 3 302.159365 903.456264 NaN NaN NaN NaN NaN NaN NaN 97.328 1 93.093 92.593 93.593 -4.2348 0 0 0 0.21486 1 18590 18590 1.4819 0 1 + 29418 23589 19695 19703 28957 28957 0.0006746092343519194 LTSSARTLALQ 11 Unmodified _LTSSARTLALQ_ 0 0 0 ZSWIM6|p.A977T|1|0.31|ENSG00000130449|chr5:61543598-61543598|G/A|missense_variant ZSWIM6|p.A977T|1|0.31|ENSG00000130449|chr5:61543598-61543598|G/A|missense_variant ZSWIM6|p.A977T|1|0.31|ENSG00000130449|chr5:61543598-61543598|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7165832519531 3 387.559305 1159.65609 NaN NaN NaN NaN NaN NaN NaN 14.863 1 13.69 13.19 14.19 -1.173 0 0 0 0.23698 1 2042 2042 2.2527 1.0594 1 29419 26642 19696 19704 28958 28958 0.08264471080519797 LTSSSLLDNDD 11 Unmodified _LTSSSLLDNDD_ 0 0 0 REV__AKAP6|p.S1753N|1|0.11|ENSG00000151320|chr14:32823071-32823071|G/A|missense_variant REV__AKAP6|p.S1753N|1|0.11|ENSG00000151320|chr14:32823071-32823071|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2747802734375 2 590.272415 1178.53028 NaN NaN NaN NaN NaN NaN NaN 164.68 1 159.89 159.39 160.39 -4.7898 0 0 0 0.23379 1 32925 32925 5.2969 0.76802 1 + 29420 13000 19697 19705 28959 28959 -0.051847052862285636 LTSTEKQLY 9 Unmodified _LTSTEKQLY_ 0 0 0 REV__nc|ENSG00000161813|Q71RC2-7|LARP4 REV__nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2822875976562 2 541.790047 1081.56554 0.24629 0.00013344 0.94775 0.00051348 1.194 0.00064692 541.7903824603635 99.324 0.76103 95.192 94.784 95.545 -4.1326 29 21 2 0 0 0 0.77732 1 19554 19554 12.532 0 1 1983600 + 29421 17469 19698 19706 28960 28960 0.02802002032240125 LTSTYMMD 8 Unmodified _LTSTYMMD_ 0 0 0 REV__ZBTB5|p.T398Wfs*7|1|0.07|ENSG00000168795|chr9:37441360-37441361|-/TGAGTCCA|frameshift_variant REV__ZBTB5|p.T398Wfs*7|1|0.07|ENSG00000168795|chr9:37441360-37441361|-/TGAGTCCA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.235595703125 2 481.203904 960.393255 0.53206 0.00025603 4.3515 0.002094 4.8836 0.00235 481.2043049944328 103.15 0.21298 99.132 99.03 99.243 -4.0212 6 5 2 0 0 0 0.99494 1 19842 19842 8.5933 0 1 382750 + 29422 18056 19699 19707 28961 28961 -0.08852608971142217 LTSVIKIQSY 10 Unmodified _LTSVIKIQSY_ 0 0 0 ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant;ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ASPM|p.N1680Kfs*11|1|0.33|ENSG00000066279|chr1:197104211-197104212|-/T|frameshift_variant;ASPM|p.I1717Nfs*24|1|0.43|ENSG00000066279|chr1:197104101-197104102|-/T|frameshift_variant;ASPM|p.L1872Ffs*24|1|0.43|ENSG00000066279|chr1:197103635-197103636|-/A|frameshift_variant;ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32275390625 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 64.954 1 61.907 61.407 62.407 -3.047 0 0 0 0.22588 1 12566 12566 10.824 1.4408 1 29423 239 19700 19708 28962 28962 0.09047140854386271 LTTDGSKQKQP 11 Unmodified _LTTDGSKQKQP_ 0 0 0 REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1 REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.296142578125 2 601.822409 1201.63027 NaN NaN NaN NaN NaN NaN NaN 165.86 1 165.86 165.36 166.36 0 0 0 0 0.20277 1 33711 33711 18.146 5.9057 1 + 29424 15551 19701 19709 28963 28963 0.03751576838226356 LTTELPQW 8 Unmodified _LTTELPQW_ 0 0 0 REV__ENST00000484965.5_1_5:7520877-7522504:+|nuORF REV__ENST00000484965.5_1_5:7520877-7522504:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 494.26019287109375 2 494.260925 986.507297 NaN NaN NaN NaN NaN NaN NaN 163 1 163 162.5 163.5 0 0 0 0 0.21486 1 32818 32818 9.3474 0.75416 1 + 29425 22213 19702 19710 28964 28964 0.01350365177609092 LTTGDVIAINY 11 Unmodified _LTTGDVIAINY_ 0 0 0 ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENST00000466373.1_1_22:19439515-19452862:-|nuORF ENSG00000070010|ENST00000263202|UFD1 ENSG00000070010|ENST00000263202|UFD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2584228515625 2 590.316428 1178.6183 NaN NaN NaN NaN NaN NaN NaN 138.23 1 138.23 137.73 138.73 0 0 0 0 0.22943 1 27437 27437 8.7454 1.4562 1 29426 1423 19703 19711 28965 28965 0.03613960095049151 LTTHATLLGRY 11 Unmodified _LTTHATLLGRY_ 0 0 0 GYS2|p.F202L|1|0.14|ENSG00000111713|chr12:21574218-21574218|A/G|missense_variant GYS2|p.F202L|1|0.14|ENSG00000111713|chr12:21574218-21574218|A/G|missense_variant GYS2|p.F202L|1|0.14|ENSG00000111713|chr12:21574218-21574218|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7523803710938 2 623.351137 1244.68772 0.39756 0.00024782 -3.1384 -0.0019563 -2.7408 -0.0017085 623.3498017452785 155.94 0.63657 150.65 150.43 151.07 -5.2854 27 17 2 0 0 0 0.89764 1 30271 30271 8.1555 1.0538 1 2158800 29427 11871 19704 19712 28966 28966 0.07516463834485876 LTTHKGIH 8 Unmodified _LTTHKGIH_ 0 0 0 ENST00000600110.1_1_19:23779328-23779892:+|nuORF ENST00000600110.1_1_19:23779328-23779892:+|nuORF ENST00000600110.1_1_19:23779328-23779892:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7619934082031 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 156.67 1 151.4 150.9 151.9 -5.2712 0 0 0 0.23782 1 30388 30388 0.12286 0 1 29428 11698 19705 19713 28967 28967 0.0517662433719579 LTTRLEAEY 9 Unmodified _LTTRLEAEY_ 0 0 0 REV__nc|ENSG00000232629|P05538-2|HLA-DQB2 REV__nc|ENSG00000232629|P05538-2|HLA-DQB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7935180664062 2 548.287671 1094.56079 -0.0072324 -3.9655E-06 0.1954 0.00010713 0.18816 0.00010317 548.2878292130079 48.669 0.54854 45.719 45.472 46.02 -2.9499 36 15 3 0 0 0 0.31673 1 8945 8945 39.95 12.321 1 3079000 + 29429 19754 19706 19714 28968 28968 0.017291178894765835 LTTVTSTVFLY 11 Unmodified _LTTVTSTVFLY_ 0 0 0 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7698364257812 2 622.842279 1243.67001 NaN NaN NaN NaN NaN NaN NaN 93.322 1 89.478 88.978 89.978 -3.844 0 0 0 0.22862 1 17891 17891 9.3831 0.63772 1 29430 5071 19707 19715 28969 28969 0.05791703788963787 LTVDSQPPPL 10 Unmodified _LTVDSQPPPL_ 0 0 0 REV__FOXN1|p.P416Qfs*134|1|0.33|ENSG00000109101|chr17:28534814-28534814|C/-|frameshift_variant REV__FOXN1|p.P416Qfs*134|1|0.33|ENSG00000109101|chr17:28534814-28534814|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26708984375 2 533.792589 1065.57063 0.92973 0.00049628 -0.85307 -0.00045536 0.076658 4.0919E-05 533.7922870357779 121.54 0.60134 116.85 116.49 117.09 -4.6873 28 16 3 0 0 0 0.764 1 23330 23330 23.79 2.2528 1 1574700 + 29431 15151 19708 19716 28970 28970 0.04046305894848956 LTVGIVPIE 9 Unmodified _LTVGIVPIE_ 0 0 0 REV__nc|ENSG00000205060|Q969S0-3|SLC35B4 REV__nc|ENSG00000205060|Q969S0-3|SLC35B4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.2130126953125 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 90.083 1 90.083 89.583 90.583 0 0 0 0 0.23508 1 17598 17598 0.86438 0.46366 1 + 29432 19578 19709 19717 28971 28971 0.09188412734135909 LTVGIVPIE 9 Unmodified _LTVGIVPIE_ 0 0 0 REV__nc|ENSG00000205060|Q969S0-3|SLC35B4 REV__nc|ENSG00000205060|Q969S0-3|SLC35B4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.2325134277344 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 126.19 1 121.54 121.04 122.04 -4.6495 0 0 0 0.23508 1 24278 24278 4.5289 2.8762 1 + 29433 19578 19709 19717 28972 28972 0.09188412734135909 LTVHVQIP 8 Unmodified _LTVHVQIP_ 0 0 0 REV__ENSG00000152256|ENST00000282077|PDK1 REV__ENSG00000152256|ENST00000282077|PDK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.759765625 2 453.774003 905.533452 -0.42897 -0.00019465 0.66973 0.00030391 0.24076 0.00010925 453.7742555679948 106 0.77005 101.74 101.34 102.11 -4.2638 56 21 3 0 0 0 8448 1 20869 20869 4.2837 0 1 8829900 + 29434 17102 19710 19718 28973 28973 0.076906791397505 LTVHVQIP 8 Unmodified _LTVHVQIP_ 0 0 0 REV__ENSG00000152256|ENST00000282077|PDK1 REV__ENSG00000152256|ENST00000282077|PDK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75750732421875 2 453.774003 905.533452 -0.0037573 -1.7049E-06 0.21619 9.8103E-05 0.21244 9.6398E-05 453.77401924271663 106.17 0.72792 101.79 101.44 102.17 -4.3764 49 20 3 0 0 0 8448 1 20323 20323 1.7423 0 1 7807300 + 29435 17102 19710 19718 28974 28974 0.076906791397505 LTVHVQIP 8 Unmodified _LTVHVQIP_ 0 0 0 REV__ENSG00000152256|ENST00000282077|PDK1 REV__ENSG00000152256|ENST00000282077|PDK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7597961425781 2 453.774003 905.533452 0.6954 0.00031555 -0.40074 -0.00018185 0.29465 0.00013371 453.7737603212464 105.84 0.79551 101.75 101.43 102.23 -4.0913 52 22 3 0 0 0 8448 1 20354 20354 1.7423 0.28721 1 6556800 + 29436 17102 19710 19718 28975 28975 0.076906791397505 LTVKIVEEY 9 Unmodified _LTVKIVEEY_ 0 0 0 REV__TIPARP|p.S652Ifs*15|1|0.07|ENSG00000163659|chr3:156705111-156705112|-/TAAAG|frameshift_variant REV__TIPARP|p.S652Ifs*15|1|0.07|ENSG00000163659|chr3:156705111-156705112|-/TAAAG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7666625976562 2 547.310615 1092.60668 0.33694 0.00018441 2.6368 0.0014432 2.9738 0.0016276 547.813650185181 139.95 0.17606 135.11 134.95 135.12 -4.8492 5 4 2 0 0 0 0.8319 1 26975 26975 4.3292 0.73274 1 1010900 + 29437 24805 19711 19719 28976 28976 0.0640776307170654 LTVLFHTS 8 Unmodified _LTVLFHTS_ 0 0 0 ENST00000448892.1_1_3:194208670-194208955:+|nuORF ENST00000448892.1_1_3:194208670-194208955:+|nuORF ENST00000448892.1_1_3:194208670-194208955:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2409362792969 2 459.258185 916.501818 -0.066145 -3.0378E-05 -0.0090186 -4.1419E-06 -0.075164 -3.452E-05 459.25818701800904 138.1 0.69167 133.45 133.08 133.77 -4.6413 24 19 2 0 0 0 8448 1 27231 27231 3.5871 2.9057 1 1800600 29438 9961 19712 19720 28977 28977 0.0402268638579244 LTVLFHTS 8 Unmodified _LTVLFHTS_ 0 0 0 ENST00000448892.1_1_3:194208670-194208955:+|nuORF ENST00000448892.1_1_3:194208670-194208955:+|nuORF ENST00000448892.1_1_3:194208670-194208955:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.258185 916.501818 -0.066145 -3.0378E-05 -0.0090186 -4.1419E-06 -0.075164 -3.452E-05 459.25818701800904 138.1 0.69167 133.45 133.08 133.77 -4.6413 -0.011194 -3.9079E-05 NaN 3.5871 24 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1800600 29439 9961 19712 19720 0.0402268638579244 LTVLFHTS 8 Unmodified _LTVLFHTS_ 0 0 0 ENST00000448892.1_1_3:194208670-194208955:+|nuORF ENST00000448892.1_1_3:194208670-194208955:+|nuORF ENST00000448892.1_1_3:194208670-194208955:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.258185 916.501818 0.020169 9.2629E-06 0.15133 6.9501E-05 0.1715 7.8764E-05 459.25811986966437 138.4 0.83772 133.48 133.01 133.84 -4.9216 0.011194 0.00010821 NaN 3.5871 28 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1520100 29440 9961 19712 19720 0.0402268638579244 LTVPTLTY 8 Unmodified _LTVPTLTY_ 0 0 0 tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1 tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1 tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75927734375 2 454.260394 906.506234 0.40741 0.00018507 -0.32157 -0.00014608 0.085837 3.8992E-05 454.26018342457843 160.38 0.63614 155.13 154.68 155.32 -5.2527 27 17 2 0 0 0 0.58903 1 31115 31115 30.225 0 1 1792200 29441 25972 19713 19721 28978 28978 0.049241508086993235 LTVPTLTY 8 Unmodified _LTVPTLTY_ 0 0 0 tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1 tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1 tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 454.260394 906.506234 0.069784 3.17E-05 0.082532 3.7491E-05 0.15232 6.9191E-05 454.2604061905014 159.75 0.601 154.95 154.66 155.26 -4.7952 -0.13737 9.3057E-05 NaN 30.225 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1940300 29442 25972 19713 19721 0.049241508086993235 LTVPTLTY 8 Unmodified _LTVPTLTY_ 0 0 0 tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1 tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1 tr|U7SKX5|U7SKX5_FUSNUSWIM-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01980PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 454.260394 906.506234 0.13339 6.0595E-05 0.073202 3.3253E-05 0.2066 9.3848E-05 454.2603242550856 160.42 0.52699 155.19 154.8 155.33 -5.2299 0.097776 8.458E-05 NaN 30.225 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2067900 29443 25972 19713 19721 0.049241508086993235 LTVQIFGY 8 Unmodified _LTVQIFGY_ 0 0 0 REV__nc|ENSG00000105426|Q13332-7|PTPRS REV__nc|ENSG00000105426|Q13332-7|PTPRS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1596374511719 3 314.176133 939.506569 NaN NaN NaN NaN NaN NaN NaN 96.126 1 91.897 91.397 92.397 -4.2289 0 0 0 0.21486 1 18352 18352 1.6526 0.45928 1 + 29444 14989 19714 19722 28979 28979 0.034395705285760414 LTVWYQKWKRR 11 Unmodified _LTVWYQKWKRR_ 0 0 0 REV__ENSG00000146426|ENST00000682666|TIAM2 REV__ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2733764648438 3 521.96841 1562.8834 -0.53718 -0.00028039 0.9761 0.00050949 0.43892 0.0002291 521.9672863880356 162.15 0.10193 157.01 156.92 157.02 -5.1438 4 2 2 0 0 0 0.66242 1 31498 31498 0.00056442 0 1 2856500 + 29445 16889 19715 19723 28980 28980 0.12447474079135645 LTWCGTVTY 9 Unmodified _LTWCGTVTY_ 0 0 0 REV__HTR1B|p.R114C|1|0.18|ENSG00000135312|chr6:77463064-77463064|G/A|missense_variant REV__HTR1B|p.R114C|1|0.18|ENSG00000135312|chr6:77463064-77463064|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.258544921875 2 522.24696 1042.47937 NaN NaN NaN NaN NaN NaN NaN 92.474 1 88.549 88.049 89.049 -3.9251 0 0 0 0.23508 1 18110 18110 11.64 0.81637 1 + 29446 23642 19716 19724 28981 28981 -0.04017281074106904 LTWIDADP 8 Unmodified _LTWIDADP_ 0 0 0 REV__ENSG00000177669|ENST00000320542|MBOAT4 REV__ENSG00000177669|ENST00000320542|MBOAT4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25103759765625 2 465.732 929.449448 0.14979 6.976E-05 -0.26147 -0.00012178 -0.11169 -5.2016E-05 465.73184222775274 30.153 0.49689 30.153 29.884 30.381 0 31 13 3 0 0 0 1.0147 1 5374 5374 5.2307 0 1 4623800 + 29447 18569 19717 19725 28982 28982 -0.01809896747829498 LTWIDLCSFY 10 Unmodified _LTWIDLCSFY_ 0 0 0 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7758178710938 2 630.8021 1259.58965 NaN NaN NaN NaN NaN NaN NaN 94.368 1 94.368 93.868 94.868 0 0 0 0 0.22588 1 18480 18480 10.074 3.3508 1 + 29448 18081 19718 19726 28983 28983 -0.029764808057507253 LTWKVRRL 8 Unmodified _LTWKVRRL_ 0 0 0 REV__ENST00000355379.3_1_1:155231889-155232135:-|nuORF REV__ENST00000355379.3_1_1:155231889-155232135:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.55364990234375 3 357.897704 1070.67128 -0.046985 -1.6816E-05 -0.9135 -0.00032694 -0.96048 -0.00034375 357.8972456418371 41.48 0.7037 38.829 38.585 39.288 -2.651 26 19 2 0 0 0 1.0252 1 7533 7533 3.2813 0.54611 1 342340 + 29449 20788 19719 19727 28984 28984 0.13877427459033242 LTWLAPGGT 9 Unmodified _LTWLAPGGT_ 0 0 0 REV__ENST00000505306.5_1_17:48166637-48166859:+|nuORF REV__ENST00000505306.5_1_17:48166637-48166859:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2384033203125 2 458.25036 914.486168 NaN NaN NaN NaN NaN NaN NaN 66.36 1 62.864 62.364 63.364 -3.4965 0 0 0 0.22621 1 12434 12434 15.847 1.0089 1 + 29450 22475 19720 19728 28985 28985 0.025503998687554486 LTYELSEAR 9 Unmodified _LTYELSEAR_ 0 0 0 REV__ENST00000359742.8_2_12:67072667-67072775:-|nuORF REV__ENST00000359742.8_2_12:67072667-67072775:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2788696289062 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 160.26 1 155.03 154.53 155.53 -5.2299 0 0 0 0.19636 1 31113 31113 2.4985 0 1 + 29451 20855 19721 19729 28986 28986 0.008088313724329055 LTYSIYGL 8 Unmodified _LTYSIYGL_ 0 0 0 REV__ENST00000449005.5_1_1:783104-787332:+|nuORF REV__ENST00000449005.5_1_1:783104-787332:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25335693359375 2 465.252569 928.490584 NaN NaN NaN NaN NaN NaN NaN 92.593 1 92.593 92.093 93.093 0 0 0 0 0.22834 1 18106 18106 3.5871 1.8448 1 + 29452 21785 19722 19730 28987 28987 0.023478642916757053 LVAKIKKL 8 Unmodified _LVAKIKKL_ 0 0 0 REV__nc|ENSG00000175054|Q13535-2|ATR REV__nc|ENSG00000175054|Q13535-2|ATR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.89569091796875 3 304.891668 911.653173 NaN NaN NaN NaN NaN NaN NaN 178.74 1 178.74 178.24 179.24 0 0 0 0 0.21486 1 37024 37024 0 0 1 + 29453 18448 19723 19731 28988 28988 0.19381292484331425 LVAKIKKL 8 Unmodified _LVAKIKKL_ 0 0 0 REV__nc|ENSG00000175054|Q13535-2|ATR REV__nc|ENSG00000175054|Q13535-2|ATR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.8872375488281 3 304.891668 911.653173 NaN NaN NaN NaN NaN NaN NaN 7.9398 1 6.925 6.425 7.425 -1.0148 0 0 0 0.21486 1 703 703 0 0 1 + 29454 18448 19723 19731 28989 28989 0.19381292484331425 LVALVLWIPR 10 Unmodified _LVALVLWIPR_ 0 0 0 REV__ENST00000272217.6_1_1:202102688-202103180:-|nuORF REV__ENST00000272217.6_1_1:202102688-202103180:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2496948242188 2 590.384251 1178.75395 NaN NaN NaN NaN NaN NaN NaN 158.23 1 158.23 157.73 158.73 0 0 0 0 0.22588 1 31767 31767 3.2813 1.2216 1 + 29455 20276 19724 19732 28990 28990 0.17172324467151157 LVAMARPA 8 Unmodified _LVAMARPA_ 0 0 0 REV__nc|ENSG00000172053|P47897-2|QARS1 REV__nc|ENSG00000172053|P47897-2|QARS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 414.74188232421875 2 414.741648 827.468743 NaN NaN NaN NaN NaN NaN NaN 115.68 1 111.32 110.82 111.82 -4.3585 0 0 0 0.23749 1 22271 22271 0.12286 0.11459 1 + 29456 18270 19725 19733 28991 28991 0.04810781062110436 LVARDYESL 9 Unmodified _LVARDYESL_ 0 0 0 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2808227539062 2 533.282389 1064.55022 0.11223 5.9849E-05 -0.099621 -5.3126E-05 0.012606 6.7227E-06 533.2823440528116 79.64 0.56683 76.129 75.837 76.403 -3.5102 38 15 3 0 0 0 0.30056 1 15515 15515 1.2148 0 1 6177800 29457 7823 19726 19734 28992 28992 0.020531352350417365 LVAVIGTSIG 10 Unmodified _LVAVIGTSIG_ 0 0 0 REV__SLC26A3|p.D99Sfs*3|1|0.07|ENSG00000091138|chr7:107791917-107791918|-/AGTTACT|frameshift_variant REV__SLC26A3|p.D99Sfs*3|1|0.07|ENSG00000091138|chr7:107791917-107791918|-/AGTTACT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2471618652344 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 176.68 1 171.78 171.28 172.28 -4.9008 0 0 0 0.22588 1 35228 35228 0 0 1 + 29458 14566 19727 19735 28993 28993 0.09219528591404469 LVCALGQA 8 Unmodified _LVCALGQA_ 0 0 0 nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF nc|ENSG00000262664|Q8WZ82|OVCA2 nc|ENSG00000262664|Q8WZ82|OVCA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7126159667969 2 387.712556 773.41056 -0.067112 -2.602E-05 0.40807 0.00015821 0.34095 0.00013219 387.7126218295148 30.237 0.80643 30.237 29.919 30.725 0 47 22 3 0 0 0 0.76728 1 5385 5385 5.7604 2.8712 1 4281500 29459 8320 19728 19736 28994 28994 0.014790994168379257 LVCALGQA 8 Unmodified _LVCALGQA_ 0 0 0 nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF nc|ENSG00000262664|Q8WZ82|OVCA2 nc|ENSG00000262664|Q8WZ82|OVCA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7125549316406 2 387.712556 773.41056 -0.18287 -7.0902E-05 0.2635 0.00010216 0.080624 3.1259E-05 387.71265209804034 32.267 0.83207 30.119 29.795 30.627 -2.1483 52 23 4 0 0 0 0.72861 2 5640 5640;5656 10.183 4.423 1 2915400 29460 8320 19728 19736 28995;28996 28995 0.014790994168379257 LVCALGQA 8 Unmodified _LVCALGQA_ 0 0 0 nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF nc|ENSG00000262664|Q8WZ82|OVCA2 nc|ENSG00000262664|Q8WZ82|OVCA2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 387.712556 773.41056 -0.039003 -1.5122E-05 0.27704 0.00010741 0.23804 9.2289E-05 387.71258231601615 32.286 0.78275 30.056 29.724 30.507 -2.2305 -0.13267 4.9789E-05 NaN 10.183 54 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3587300 29461 8320 19728 19736 0.014790994168379257 LVCALGQA 8 Unmodified _LVCALGQA_ 0 0 0 nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF nc|ENSG00000262664|Q8WZ82|OVCA2 nc|ENSG00000262664|Q8WZ82|OVCA2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 387.712556 773.41056 0.25962 0.00010066 -0.083932 -3.2541E-05 0.17568 6.8115E-05 387.71244762254594 32.369 0.77428 30.342 29.798 30.572 -2.0264 0.15372 -0.00023012 NaN 10.183 52 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3819600 29462 8320 19728 19736 0.014790994168379257 LVCCNPHH 8 Unmodified _LVCCNPHH_ 0 0 0 SMAD7|p.P209Lfs*115|1|0.42|ENSG00000101665|chr18:48948425-48948425|G/-|frameshift_variant;nc|ENSG00000101665|O15105-3|SMAD7;ENSG00000101665|ENST00000262158|SMAD7 SMAD7|p.P209Lfs*115|1|0.42|ENSG00000101665|chr18:48948425-48948425|G/-|frameshift_variant SMAD7|p.P209Lfs*115|1|0.42|ENSG00000101665|chr18:48948425-48948425|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5290222167969 2 461.70474 921.394927 NaN NaN NaN NaN NaN NaN NaN 18.105 1 16.794 16.294 17.294 -1.3109 0 0 0 0.2396 1 2932 2932 0 0 1 29463 2080 19729 19737 28997 28997 -0.068915103718723 LVCFGVKY 8 Unmodified _LVCFGVKY_ 0 0 0 ENST00000540470.5_1_13:43544616-43566301:-|nuORF ENST00000540470.5_1_13:43544616-43566301:-|nuORF ENST00000540470.5_1_13:43544616-43566301:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1709899902344 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 98.848 1 94.579 94.079 95.079 -4.2692 0 0 0 0.21486 1 18898 18898 1.8442 0 1 29464 11069 19730 19738 28998 28998 0.022165320020576473 LVCFGVKY 8 Unmodified _LVCFGVKY_ 0 0 0 ENST00000540470.5_1_13:43544616-43566301:-|nuORF ENST00000540470.5_1_13:43544616-43566301:-|nuORF ENST00000540470.5_1_13:43544616-43566301:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.17071533203125 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 98.11 1 94.154 93.654 94.654 -3.9564 0 0 0 0.21486 1 18831 18831 1.8442 0 1 29465 11069 19730 19738 28999 28999 0.022165320020576473 LVCSGCHCNY 10 Unmodified _LVCSGCHCNY_ 0 0 0 ENST00000571914.1_1_17:79605115-79605256:+|nuORF ENST00000571914.1_1_17:79605115-79605256:+|nuORF ENST00000571914.1_1_17:79605115-79605256:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 550.1309814453125 2 549.711904 1097.40926 0.38558 0.00021196 -2.0529 -0.0011285 -1.6673 -0.00091653 549.7116391866388 165.77 0.2066 160.98 160.85 161.05 -4.7898 6 5 2 0 0 0 1.133 1 33221 33221 0.0013812 0.0013812 1 8442600 29466 11427 19731 19739 29000 29000 -0.13555226005883014 LVCWELIYKKV 11 Unmodified _LVCWELIYKKV_ 0 0 0 REV__IL6ST|p.S731Lfs*57|1|0.13|ENSG00000134352|chr5:55941649-55941649|C/-|frameshift_variant REV__IL6ST|p.S731Lfs*57|1|0.13|ENSG00000134352|chr5:55941649-55941649|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2489013671875 3 465.268586 1392.78393 NaN NaN NaN NaN NaN NaN NaN 93.486 1 89.642 89.142 90.142 -3.844 0 0 0 0.22632 1 17921 17921 0.50596 0 1 + 29467 23656 19732 19740 29001 29001 0.10324895350163388 LVCWELIYKKV 11 Unmodified _LVCWELIYKKV_ 0 0 0 REV__IL6ST|p.S731Lfs*57|1|0.13|ENSG00000134352|chr5:55941649-55941649|C/-|frameshift_variant REV__IL6ST|p.S731Lfs*57|1|0.13|ENSG00000134352|chr5:55941649-55941649|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2496337890625 3 465.268586 1392.78393 NaN NaN NaN NaN NaN NaN NaN 94.19 1 90.346 89.846 90.846 -3.844 0 0 0 0.22632 1 18068 18068 0.094841 0 1 + 29468 23656 19732 19740 29002 29002 0.10324895350163388 LVDDHFVEL 9 Unmodified _LVDDHFVEL_ 0 0 0 BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant;ENSG00000179941|ENST00000650064|BBS10 BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.794677734375 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 136.87 1 132.23 131.73 132.73 -4.6403 0 0 0 0.05839 1 27006 27006 48.346 8.3885 1 29469 302 19733 19741 29003 29003 -2.2671392343909247E-05 LVDDHFVEL 9 Unmodified _LVDDHFVEL_ 0 0 0 BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant;ENSG00000179941|ENST00000650064|BBS10 BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7872924804688 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 137.03 1 132.39 131.89 132.89 -4.6413 0 0 0 0.05839 1 27040 27040 48.346 8.3885 1 29470 302 19733 19741 29004 29004 -2.2671392343909247E-05 LVDDHFVEL 9 Unmodified _LVDDHFVEL_ 0 0 0 BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant;ENSG00000179941|ENST00000650064|BBS10 BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7788696289062 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 137.06 1 132.14 131.64 132.64 -4.9216 0 0 0 0.12288 1 26344 26344 34.102 5.6156 1 29471 302 19733 19741 29005 29005 -2.2671392343909247E-05 LVDDHFVEL 9 Unmodified _LVDDHFVEL_ 0 0 0 BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant;ENSG00000179941|ENST00000650064|BBS10 BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7940063476562 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 137.11 1 132.19 131.69 132.69 -4.9216 0 0 0 0.063411 1 26355 26355 46.021 19.137 1 29472 302 19733 19741 29006 29006 -2.2671392343909247E-05 LVDDHFVEL 9 Unmodified _LVDDHFVEL_ 0 0 0 BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant;ENSG00000179941|ENST00000650064|BBS10 BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7960815429688 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 137.23 1 132.39 131.89 132.89 -4.84 0 0 0 0.04992 1 26437 26437 52.268 14.093 1 29473 302 19733 19741 29007 29007 -2.2671392343909247E-05 LVDHVYAI 8 Unmodified _LVDHVYAI_ 0 0 0 ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;ENST00000529672.1_1_11:111613245-111618714:-|nuORF;ENSG00000105568|ENST00000322088|PPP2R1A ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2574157714844 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 174.84 1 169.95 169.45 170.45 -4.8916 0 0 0 0.21486 1 34821 34821 5.2307 2.3415 1 29474 2320;4100 19734 19742 29008 29008 0.034706863857991266 LVDKYQHY 8 Unmodified _LVDKYQHY_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001-10|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2703247070312 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 99.09 1 94.958 94.458 95.458 -4.1326 0 0 0 0.21486 1 19460 19460 9.3474 0.75416 1 29475 4896 19735 19743 29009 29009 -0.0005883007379452465 LVDLSLSSP 9 Unmodified _LVDLSLSSP_ 0 0 0 ENST00000524492.5_1_8:145580604-145580850:-|nuORF ENST00000524492.5_1_8:145580604-145580850:-|nuORF ENST00000524492.5_1_8:145580604-145580850:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25921630859375 2 465.760758 929.506963 0.069994 3.26E-05 -0.3908 -0.00018202 -0.3208 -0.00014942 465.7605717361857 83.199 0.41654 79.325 79.152 79.569 -3.8736 18 11 2 0 0 0 0.54076 1 15816 15816 34.102 0 1 904850 29476 10882 19736 19744 29010 29010 0.039389454577644756 LVDNHHEVY 9 Unmodified _LVDNHHEVY_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.19140625 3 375.848967 1124.52507 0.27926 0.00010496 -0.437 -0.00016425 -0.15774 -5.9287E-05 375.84874573100564 31.879 0.49173 29.853 29.623 30.114 -2.0264 34 13 4 0 0 0 0.058839 1 5519 5519 60.47 50.319 1 2689400 29477 7353 19737 19745 29011 29011 -0.03220919567525016 LVDNHHEVY 9 Unmodified _LVDNHHEVY_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.848967 1124.52507 -0.12516 -4.7043E-05 0.037533 1.4107E-05 -0.087632 -3.2936E-05 375.84892975557517 29.793 0.44721 29.793 29.576 30.024 0 -0.039048 0.00011167 NaN 60.47 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2252200 29478 7353 19737 19745 -0.03220919567525016 LVDNHHEVY 9 Unmodified _LVDNHHEVY_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.848967 1124.52507 -0.014145 -5.3165E-06 0.012439 4.6751E-06 -0.0017066 -6.4142E-07 375.84889699482903 32.059 0.42216 29.828 29.586 30.008 -2.2305 -0.00382 8.338E-05 NaN 60.47 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2578700 29479 7353 19737 19745 -0.03220919567525016 LVDNHHEVY 9 Unmodified _LVDNHHEVY_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 375.848967 1124.52507 -0.21536 -8.0943E-05 0.10034 3.7713E-05 -0.11502 -4.3229E-05 375.8489585951572 32.003 0.51892 29.854 29.585 30.103 -2.1483 0.022188 0.00018249 NaN 60.47 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2520800 29480 7353 19737 19745 -0.03220919567525016 LVDQRVAEY 9 Unmodified _LVDQRVAEY_ 0 0 0 POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant;ENSG00000143157|ENST00000367876|POGK POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7728881835938 2 546.787838 1091.56112 0.22293 0.0001219 -0.20183 -0.00011036 0.021098 1.1536E-05 546.7876920298434 55.232 0.95875 55.232 54.877 55.836 0 84 26 5 0 0 0 0.0087973 4 10556 10522;10552;10556;10568 107.1 60.063 1 65079000 29481 4459 19738 19746 29012;29013;29014;29015 29014 0.019005376093446102 LVDQRVAEY 9 Unmodified _LVDQRVAEY_ 0 0 0 POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant;ENSG00000143157|ENST00000367876|POGK POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7907104492188 2 546.787838 1091.56112 0.11132 6.0867E-05 -0.14727 -8.0526E-05 -0.035954 -1.9659E-05 546.7877309304573 58.263 1.003 55.353 54.998 56.001 -2.9105 92 28 5 0 0 0 0.0070869 3 11165 11164;11165;11211 110.79 60.063 1 80543000 29482 4459 19738 19746 29016;29017;29018 29017 0.019005376093446102 LVDQRVAEY 9 Unmodified _LVDQRVAEY_ 0 0 0 POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant;ENSG00000143157|ENST00000367876|POGK POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7716064453125 2 546.787838 1091.56112 0.10392 5.6824E-05 -0.097353 -5.3231E-05 0.0065696 3.5922E-06 546.7877528678439 58.619 0.8825 55.368 54.996 55.878 -3.2517 90 24 5 0 0 0 0.010315 4 10918 10857;10903;10918;10947 103.82 43.75 1 70996000 29483 4459 19738 19746 29019;29020;29021;29022 29021 0.019005376093446102 LVDQRVAEY 9 Unmodified _LVDQRVAEY_ 0 0 0 POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant;ENSG00000143157|ENST00000367876|POGK POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.790771484375 2 546.787838 1091.56112 0.17212 9.4115E-05 -0.15568 -8.5125E-05 0.016442 8.9904E-06 546.7877180452542 58.621 0.96956 55.415 55.061 56.03 -3.2052 89 27 5 0 0 0 0.011757 3 10948 10899;10948;10996 100.71 52.96 1 70729000 29484 4459 19738 19746 29023;29024;29025 29024 0.019005376093446102 LVDRSTDDW 9 Unmodified _LVDRSTDDW_ 0 0 0 LYST|p.N2269S|1|0.05|ENSG00000143669|chr1:235759047-235759047|T/C|missense_variant LYST|p.N2269S|1|0.05|ENSG00000143669|chr1:235759047-235759047|T/C|missense_variant LYST|p.N2269S|1|0.05|ENSG00000143669|chr1:235759047-235759047|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 553.7659912109375 2 553.759278 1105.504 NaN NaN NaN NaN NaN NaN NaN 165.1 1 160.15 159.65 160.65 -4.9484 0 0 0 0.23508 1 32241 32241 7.2892 0 1 29485 12101 19739 19747 29026 29026 -0.04452929667036187 LVDSIRISY 9 Unmodified _LVDSIRISY_ 0 0 0 REV__ENST00000453770.1_1_20:1514156-1534896:-|nuORF REV__ENST00000453770.1_1_20:1514156-1534896:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2867431640625 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 150.9 1 150.9 150.4 151.4 0 0 0 0 0.12123 1 30216 30216 34.402 11.253 1 + 29486 21834 19740 19748 29027 29027 0.056900121317767116 LVDSSPCKK 9 Unmodified _LVDSSPCKK_ 0 0 0 nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL;MASTL|p.I458Nfs*5|1|0.32|ENSG00000120539|chr10:27170324-27170325|-/A|frameshift_variant;MASTL|p.N564Ifs*4|1|0.29|ENSG00000120539|chr10:27170646-27170646|A/-|frameshift_variant nc|ENSG00000120539|Q96GX5-2|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2542724609375 2 488.760235 975.505917 -0.31884 -0.00015584 0.78394 0.00038316 0.4651 0.00022732 488.7607542475705 50.646 0.62317 47.594 47.264 47.888 -3.0517 48 17 4 0 0 0 0.40602 1 9336 9336 25.399 1.3787 1 2014100 29487 3140 19741 19749 29028 29028 0.01718407817213574 LVDSSPCKK 9 Unmodified _LVDSSPCKK_ 0 0 0 nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL;MASTL|p.I458Nfs*5|1|0.32|ENSG00000120539|chr10:27170324-27170325|-/A|frameshift_variant;MASTL|p.N564Ifs*4|1|0.29|ENSG00000120539|chr10:27170646-27170646|A/-|frameshift_variant nc|ENSG00000120539|Q96GX5-2|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 488.760235 975.505917 -0.014028 -6.8565E-06 0.61245 0.00029934 0.59843 0.00029249 488.7605981460133 50.518 0.49719 47.637 47.395 47.892 -2.8811 0.021685 -7.554E-05 NaN 25.399 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2442000 29488 3140 19741 19749 0.01718407817213574 LVDTGNVKGY 10 Unmodified _LVDTGNVKGY_ 0 0 0 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2786254882812 2 533.282389 1064.55022 0.75738 0.0004039 1.3443 0.00071688 2.1017 0.0011208 533.2827773165963 107.28 0.71266 103.15 102.84 103.56 -4.135 34 20 3 0 0 0 0.65405 1 20584 20584 15.847 0 1 2144800 29489 7825 19742 19750 29029 29029 0.020531352350417365 LVDVPFPNSY 10 Unmodified _LVDVPFPNSY_ 0 0 0 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant;ADGRL3|p.W832Lfs*13|1|0.39|ENSG00000150471|chr4:61948167-61948168|-/T|frameshift_variant;ADGRL3|p.Y966Lfs*9|1|0.19|ENSG00000150471|chr4:61983464-61983465|-/T|frameshift_variant;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;ADGRL3|p.H1275Lfs*11|1|0.08|ENSG00000150471|chr4:62070322-62070322|A/-|frameshift_variant;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-3|ADGRL3 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3135375976562 2 575.792589 1149.57063 0.28868 0.00016622 -0.27558 -0.00015868 0.013095 7.5399E-06 575.7925864087232 122.27 0.61263 122.27 121.99 122.61 0 30 17 2 0 0 0 0.65996 1 24143 24143 15.248 0.66679 1 4217500 29490 82 19743 19751 29030 29030 0.0018230589485028759 LVDVPFPNSY 10 Unmodified _LVDVPFPNSY_ 0 0 0 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant;ADGRL3|p.W832Lfs*13|1|0.39|ENSG00000150471|chr4:61948167-61948168|-/T|frameshift_variant;ADGRL3|p.Y966Lfs*9|1|0.19|ENSG00000150471|chr4:61983464-61983465|-/T|frameshift_variant;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;ADGRL3|p.H1275Lfs*11|1|0.08|ENSG00000150471|chr4:62070322-62070322|A/-|frameshift_variant;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-3|ADGRL3 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3231811523438 2 575.792589 1149.57063 0.32339 0.0001862 -0.68652 -0.00039529 -0.36313 -0.00020909 575.7923037888609 127.04 0.70816 122.25 121.92 122.63 -4.7958 38 19 3 0 0 0 0.37059 2 24376 24361;24376 32.786 3.7041 1 6082800 29491 82 19743 19751 29031;29032 29032 0.0018230589485028759 LVDVPFPNSY 10 Unmodified _LVDVPFPNSY_ 0 0 0 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant;ADGRL3|p.W832Lfs*13|1|0.39|ENSG00000150471|chr4:61948167-61948168|-/T|frameshift_variant;ADGRL3|p.Y966Lfs*9|1|0.19|ENSG00000150471|chr4:61983464-61983465|-/T|frameshift_variant;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;ADGRL3|p.H1275Lfs*11|1|0.08|ENSG00000150471|chr4:62070322-62070322|A/-|frameshift_variant;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-3|ADGRL3 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.792589 1149.57063 0.28868 0.00016622 -0.27558 -0.00015868 0.013095 7.5399E-06 575.7925864087232 122.27 0.61263 122.27 121.99 122.61 0 -0.0042982 8.7538E-05 NaN 32.786 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4217500 29492 82 19743 19751 0.0018230589485028759 LVDVPFPNSY 10 Unmodified _LVDVPFPNSY_ 0 0 0 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant;ADGRL3|p.W832Lfs*13|1|0.39|ENSG00000150471|chr4:61948167-61948168|-/T|frameshift_variant;ADGRL3|p.Y966Lfs*9|1|0.19|ENSG00000150471|chr4:61983464-61983465|-/T|frameshift_variant;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;ADGRL3|p.H1275Lfs*11|1|0.08|ENSG00000150471|chr4:62070322-62070322|A/-|frameshift_variant;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-3|ADGRL3 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 575.792589 1149.57063 0.32339 0.0001862 -0.68652 -0.00039529 -0.36313 -0.00020909 575.7923037888609 127.04 0.70816 122.25 121.92 122.63 -4.7958 -0.029403 -0.00038569 NaN 32.786 38 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6082800 29493 82 19743 19751 0.0018230589485028759 LVDVPFPNSY 10 Unmodified _LVDVPFPNSY_ 0 0 0 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant;ADGRL3|p.W832Lfs*13|1|0.39|ENSG00000150471|chr4:61948167-61948168|-/T|frameshift_variant;ADGRL3|p.Y966Lfs*9|1|0.19|ENSG00000150471|chr4:61983464-61983465|-/T|frameshift_variant;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;ADGRL3|p.H1275Lfs*11|1|0.08|ENSG00000150471|chr4:62070322-62070322|A/-|frameshift_variant;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-3|ADGRL3 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.792589 1149.57063 0.17953 0.00010337 -0.21693 -0.00012491 -0.037403 -2.1536E-05 575.7925162337709 127.04 0.70435 122.34 121.97 122.68 -4.6998 0.069049 0.00015508 NaN 32.786 44 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3723400 29494 82 19743 19751 0.0018230589485028759 LVDWLYKV 8 Unmodified _LVDWLYKV_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.8876037597656 3 345.867299 1034.58007 NaN NaN NaN NaN NaN NaN NaN 6.9171 1 5.8725 5.3725 6.3725 -1.0446 0 0 0 0.21486 1 541 541 0.40072 0 1 29495 3487;12310 19744 19752 29033 29033 0.06416118971037577 LVEALFKYI 9 Unmodified _LVEALFKYI_ 0 0 0 ENST00000436565.2_1_13:77560670-77561054:+|nuORF ENST00000436565.2_1_13:77560670-77561054:+|nuORF ENST00000436565.2_1_13:77560670-77561054:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7882080078125 2 548.326068 1094.63758 0.29702 0.00016286 -3.4177 -0.001874 -3.1206 -0.0017111 548.3247304930732 135.92 0.74385 131.09 130.56 131.3 -4.8307 30 20 2 0 0 0 0.72864 1 26130 26130 23.148 5.0134 1 1685900 29496 9840 19745 19753 29034 29034 0.09404961176619508 LVEIKKII 8 Unmodified _LVEIKKII_ 0 0 0 REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73834228515625 2 478.331153 954.647754 NaN NaN NaN NaN NaN NaN NaN 147.85 1 142.69 142.19 143.19 -5.1557 0 0 0 0.2343 1 28614 28614 0.25148 0 1 + 29497 20658 19746 19754 29035 29035 0.16861568901856572 LVEKKGYSY 9 Unmodified _LVEKKGYSY_ 0 0 0 REV__tr|U7STB4|U7STB4_FUSNUIroncomplextransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01353PE=4SV=1 REV__tr|U7STB4|U7STB4_FUSNUIroncomplextransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01353PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7941284179688 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 42.019 1 39.368 38.868 39.868 -2.651 0 0 0 0.21844 1 7557 7557 18.146 1.0335 1 + 29498 25096 19747 19755 29036 29036 0.03634609757477847 LVEQSKQP 8 Unmodified _LVEQSKQP_ 0 0 0 REV__ENSG00000255151|ENST00000527482|GLYATL1B REV__ENSG00000255151|ENST00000527482|GLYATL1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25848388671875 2 464.758549 927.502546 0.19897 9.2472E-05 -1.0653 -0.00049511 -0.86633 -0.00040263 464.7582239750129 26.868 0.2053 26.868 26.702 26.907 0 7 5 2 0 0 0 0.81042 1 4714 4714 23.148 0 1 502310 + 29499 19853 19748 19756 29037 29037 0.035894810348509054 LVEVPDIFR 9 Unmodified _LVEVPDIFR_ 0 0 0 ENSG00000165125|ENST00000359396|TRPV6;nc|ENSG00000165125|Q9H1D0-2|TRPV6 ENSG00000165125|ENST00000359396|TRPV6 ENSG00000165125|ENST00000359396|TRPV6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.772216796875 2 544.310949 1086.60735 0.31471 0.0001713 3.5731 0.0019449 3.8878 0.0021162 544.8127605987917 136.61 0.24683 131.78 131.66 131.91 -4.8307 8 6 2 0 0 0 0.82765 1 26309 26309 5.7319 2.1354 1 1845400 29500 5601 19749 19757 29038 29038 0.06750602511419856 LVFAQLHCD 9 Unmodified _LVFAQLHCD_ 0 0 0 REV__ENSG00000213927|ENST00000259631|CCL27 REV__ENSG00000213927|ENST00000259631|CCL27 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69873046875 2 523.260402 1044.50625 0.58865 0.00030802 -0.44617 -0.00023346 0.14248 7.4556E-05 523.2601732544538 100.92 0.46085 100.92 100.69 101.15 0 23 12 2 0 0 0 0.79204 1 19847 19847 11.64 0.81637 1 2651000 + 29501 19652 19750 19758 29039 29039 -0.014221724629351229 LVFDVPTVSA 10 Unmodified _LVFDVPTVSA_ 0 0 0 REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6929321289062 2 524.289682 1046.56481 -0.752 -0.00039427 -0.84449 -0.00044276 -1.5965 -0.00083703 524.2890859316648 20.849 0.83243 19.128 18.8 19.633 -1.7211 38 23 3 0 0 0 0.87854 1 3218 3218 9.3831 0 1 3052400 + 29502 25363 19751 19759 29040 29040 0.04339207383191024 LVFGKPVRV 9 Unmodified _LVFGKPVRV_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.2276306152344 3 338.886805 1013.63859 -0.49612 -0.00016813 0.36546 0.00012385 -0.13066 -4.428E-05 338.8868181958921 88.65 0.39263 88.65 88.467 88.86 0 19 10 2 0 0 0 0.15889 1 17303 17303 37.075 34.443 1 1397200 29503 1111 19752 19760 29041 29041 0.132312203361721 LVFSGVSILGS 11 Unmodified _LVFSGVSILGS_ 0 0 0 REV__ENSG00000182854|ENST00000332238|OR4F15 REV__ENSG00000182854|ENST00000332238|OR4F15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2100524902344 3 360.209613 1077.60701 NaN NaN NaN NaN NaN NaN NaN 88.014 1 84.221 83.721 84.721 -3.7926 0 0 0 0.22632 1 17213 17213 0.172 0.098736 1 + 29504 18804 19753 19761 29042 29042 0.07131182791590618 LVFYYIQRFRY 11 Unmodified _LVFYYIQRFRY_ 0 0 0 ENST00000515057.1_1_4:141865852-141889013:-|nuORF;nc|ENSG00000170153|Q9ULK6-4|RNF150;nc|ENSG00000170153|Q9ULK6-3|RNF150;ENSG00000170153|ENST00000515673|RNF150 ENST00000515057.1_1_4:141865852-141889013:-|nuORF ENST00000515057.1_1_4:141865852-141889013:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6912841796875 3 523.285516 1566.83472 0.48828 0.00025551 4.208 0.002202 4.6963 0.0024575 523.2884143152025 81.553 0.2076 81.553 81.475 81.683 0 6 5 2 0 0 0 0.89122 1 15893 15893 0.026206 0 1 1512600 29505 6042 19754 19762 29043 29043 0.0739756071939155 LVGATLALTA 10 Unmodified _LVGATLALTA_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2580871582031 2 465.286943 928.559333 -0.15999 -7.444E-05 0.20841 9.6971E-05 0.048424 2.2531E-05 465.28692789050524 69.154 0.66692 69.154 68.788 69.455 0 48 18 3 0 0 0 0.069049 1 13366 13366 78.149 12.914 1 11034000 + 29506 13904 19755 19763 29044 29044 0.09219528591358994 LVGATLALTA 10 Unmodified _LVGATLALTA_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2399597167969 2 465.286943 928.559333 -0.15999 -7.444E-05 0.20841 9.6971E-05 0.048424 2.2531E-05 465.28692789050524 69.154 0.66692 69.154 68.788 69.455 0 48 18 3 0 0 0 0.25325 1 13370 13370 68.081 6.7232 1 11034000 + 29507 13904 19755 19763 29045 29045 0.09219528591358994 LVGELQGMG 9 Oxidation (M) _LVGELQGM(Oxidation (M))G_ LVGELQGM(1)G LVGELQGM(44)G 0 0 1 ENSG00000185215|ENST00000560869|TNFAIP2;ENST00000560428.1_1_14:103593910-103596305:+|nuORF ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2332458496094 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 134.27 1 129.46 128.96 129.96 -4.8175 0 0 0 0.067436 1 25851 25851 44.407 8.3628 1 29508 6969 19756 19764 29046 29046 95 -0.014418541082022784 LVGLPSAGHLD 11 Unmodified _LVGLPSAGHLD_ 0 0 0 REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1 REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 123.24 1 123.24 122.74 123.74 0 0 0 0 0.23698 1 24292 24292 1.2148 0.021489 1 + 29509 18390 19757 19765 29047 29047 0.046171279889904326 LVGLPVHLL 9 Unmodified _LVGLPVHLL_ 0 0 0 ENST00000487873.1_1_6:30618866-30620506:+|nuORF;ENST00000488383.5_1_6:30618866-30620689:+|nuORF;nc|nan|Q5SQH8-2|C6orf136;nc|nan|Q5SQH8-3|C6orf136;nc|nan|Q5SQH8|C6orf136;ENSG00000204564|ENST00000651131|C6orf136 ENST00000487873.1_1_6:30618866-30620506:+|nuORF ENST00000487873.1_1_6:30618866-30620506:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2439880371094 2 480.81567 959.616788 NaN NaN NaN NaN NaN NaN NaN 144.82 1 139.88 139.38 140.38 -4.9445 0 0 0 0.1966 1 27983 27983 2.6312 0 1 29510 7588 19758 19766 29048 29048 0.13536415587611828 LVGLTWCKVQL 11 Unmodified _LVGLTWCKVQL_ 0 0 0 REV__AMOTL1|p.S295Pfs*26|1|0.37|ENSG00000166025|chr11:94800064-94800064|G/-|frameshift_variant REV__AMOTL1|p.S295Pfs*26|1|0.37|ENSG00000166025|chr11:94800064-94800064|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7765502929688 2 630.362659 1258.71076 0.89037 0.00056126 1.1826 0.00074547 2.073 0.0013067 630.3633490271397 109.53 0.73537 105.34 105.02 105.75 -4.1826 46 20 3 0 0 0 0.35536 1 21089 21089 53.833 4.3055 1 7587000 + 29511 13039 19759 19767 29049 29049 0.09175766627572557 LVGTQDSEI 9 Unmodified _LVGTQDSEI_ 0 0 0 EML5|p.D1019Efs*4|1|0.07|ENSG00000165521|chr14:88681957-88681958|-/AATATGT|frameshift_variant;nc|ENSG00000165521|Q05BV3-2|EML5;EML5|p.G1621Efs*19|1|0.2|ENSG00000165521|chr14:88624982-88624982|C/-|frameshift_variant;EML5|p.N1682Mfs*7|1|0.04|ENSG00000165521|chr14:88621246-88621246|T/-|frameshift_variant;nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;EML5|p.Y478Lfs*2|1|0.25|ENSG00000165521|chr14:88714950-88714951|-/A|frameshift_variant;nc|ENSG00000165521|Q05BV3-4|EML5 EML5|p.D1019Efs*4|1|0.07|ENSG00000165521|chr14:88681957-88681958|-/AATATGT|frameshift_variant EML5|p.D1019Efs*4|1|0.07|ENSG00000165521|chr14:88681957-88681958|-/AATATGT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2449035644531 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 102.03 1 98.013 97.513 98.513 -4.0212 0 0 0 0.19704 1 19606 19606 1.2148 0 1 29512 942 19760 19768 29050 29050 -0.0054283292729451205 LVHEGRDM 8 Unmodified _LVHEGRDM_ 0 0 0 REV__tr|U7SNB8|U7SNB8_FUSNUATPsynthasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1 REV__tr|U7SNB8|U7SNB8_FUSNUATPsynthasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73553466796875 2 478.734551 955.45455 NaN NaN NaN NaN NaN NaN NaN 86.553 1 86.553 86.053 87.053 0 0 0 0 0.22934 1 16893 16893 0.62683 0 1 + 29513 24976 19761 19769 29051 29051 -0.024959161568403943 LVHEGRDM 8 Unmodified _LVHEGRDM_ 0 0 0 REV__tr|U7SNB8|U7SNB8_FUSNUATPsynthasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1 REV__tr|U7SNB8|U7SNB8_FUSNUATPsynthasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7327880859375 2 478.734551 955.45455 NaN NaN NaN NaN NaN NaN NaN 97.01 1 92.775 92.275 93.275 -4.2348 0 0 0 0.22847 1 18524 18524 0.68139 0.054566 1 + 29514 24976 19761 19769 29052 29052 -0.024959161568403943 LVHGDEINF 9 Unmodified _LVHGDEINF_ 0 0 0 REV__ENST00000531473.5_1_8:144695082-144696778:-|nuORF REV__ENST00000531473.5_1_8:144695082-144696778:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2625732421875 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 144.16 1 144.16 143.66 144.66 0 0 0 0 0.19638 1 28795 28795 0.12781 0 1 + 29515 22771 19762 19770 29053 29053 -0.011194204534831442 LVHHRSCK 8 Unmodified _LVHHRSCK_ 0 0 0 ENSG00000164185|ENST00000296600|ZNF474 ENSG00000164185|ENST00000296600|ZNF474 ENSG00000164185|ENST00000296600|ZNF474 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2674560546875 2 490.266353 978.518153 NaN NaN NaN NaN NaN NaN NaN 145.39 1 140.45 139.95 140.95 -4.9445 0 0 0 0.22722 1 28108 28108 0.25148 0 1 29516 5521 19763 19771 29054 29054 0.028034890709136562 LVHTEILKL 9 Unmodified _LVHTEILKL_ 0 0 0 ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant;ENSG00000154262|ENST00000284425|ABCA6 ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2681884765625 2 533.336967 1064.65938 NaN NaN NaN NaN NaN NaN NaN 141.82 1 137.17 136.67 137.67 -4.6493 0 0 0 0.19656 1 28022 28022 0.073264 0 1 29517 13 19764 19772 29055 29055 0.1296376592517845 LVHTEILKL 9 Unmodified _LVHTEILKL_ 0 0 0 ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant;ENSG00000154262|ENST00000284425|ABCA6 ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant ABCA6|p.D1552Gfs*18|1|0.04|ENSG00000154262|chr17:69081107-69081108|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2813720703125 2 533.336967 1064.65938 NaN NaN NaN NaN NaN NaN NaN 141.92 1 137.27 136.77 137.77 -4.6493 0 0 0 0.23508 1 28044 28044 7.9102 0 1 29518 13 19764 19772 29056 29056 0.1296376592517845 LVIEGTFIYP 10 Unmodified _LVIEGTFIYP_ 0 0 0 COL15A1|p.L1159P|1|0.23|ENSG00000204291|chr9:99062044-99062044|T/C|missense_variant COL15A1|p.L1159P|1|0.23|ENSG00000204291|chr9:99062044-99062044|T/C|missense_variant COL15A1|p.L1159P|1|0.23|ENSG00000204291|chr9:99062044-99062044|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3229370117188 2 576.320983 1150.62741 NaN NaN NaN NaN NaN NaN NaN 73.108 1 69.57 69.07 70.07 -3.5385 0 0 0 2.8426 1 13870 13870 6.6304 5.7854 1 29519 614 19765 19773 29057 29057 0.058123534513924824 LVIKFKGP 8 Unmodified _LVIKFKGP_ 0 0 0 REV__ENST00000429644.6_1_3:81548309-81584357:-|nuORF REV__ENST00000429644.6_1_3:81548309-81584357:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 301.20086669921875 3 301.200501 900.579674 NaN NaN NaN NaN NaN NaN NaN 101.63 1 97.609 97.109 98.109 -4.0212 0 0 0 0.21486 1 19528 19528 0.40072 0 1 + 29520 15378 19766 19774 29058 29058 0.12540744041848484 LVIKFKGP 8 Unmodified _LVIKFKGP_ 0 0 0 REV__ENST00000429644.6_1_3:81548309-81584357:-|nuORF REV__ENST00000429644.6_1_3:81548309-81584357:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 301.123046875 3 301.200501 900.579674 NaN NaN NaN NaN NaN NaN NaN 111.83 1 107.6 107.1 108.1 -4.2289 0 0 0 0.21486 1 21528 21528 0.40072 0 1 + 29521 15378 19766 19774 29059 29059 0.12540744041848484 LVIKIPKLAV 10 Unmodified _LVIKIPKLAV_ 0 0 0 REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7738647460938 2 547.389003 1092.76345 NaN NaN NaN NaN NaN NaN NaN 173.22 1 168.34 167.84 168.84 -4.881 0 0 0 2.8426 1 34423 34423 0.26539 0.2216 1 + 29522 18651 19767 19775 29060 29060 0.22078092752690281 LVILAAAWHSA 11 Unmodified _LVILAAAWHSA_ 0 0 0 NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant;ENSG00000069248|ENST00000261396|NUP133 NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3181762695312 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 135.08 1 135.08 134.58 135.58 0 0 0 0 0.22632 1 26750 26750 5.4027 2.7715 1 29523 1414 19768 19776 29061 29061 0.08057997639662062 LVIRIRIKI 9 Unmodified _LVIRIRIKI_ 0 0 0 ENST00000377705.5_1_1:6585202-6585712:-|nuORF ENST00000377705.5_1_1:6585202-6585712:-|nuORF ENST00000377705.5_1_1:6585202-6585712:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21368408203125 3 375.272771 1122.79648 NaN NaN NaN NaN NaN NaN NaN 177.56 1 172.69 172.19 173.19 -4.8686 0 0 0 0.19631 1 35337 35337 0.20686 0 1 29524 9266 19769 19777 29062 29062 0.23999719595394708 LVIRPPRRIKV 11 Unmodified _LVIRPPRRIKV_ 0 0 0 AluY_dup97854|chr19:41730139-41730433:+|4.029285449154428|0.0051946344782714|9.6|481.0|13|1|anti-sense AluY_dup97854|chr19:41730139-41730433:+|4.029285449154428|0.0051946344782714|9.6|481.0|13|1|anti-sense AluY_dup97854|chr19:41730139-41730433:+|4.029285449154428|0.0051946344782714|9.6|481.0|13|1|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.1434020996094 4 337.483129 1345.90341 -0.36879 -0.00012446 -0.49145 -0.00016585 -0.86024 -0.00029032 337.4832655428301 48.732 0.13579 45.863 45.766 45.901 -2.869 5 3 2 0 0 0 0.89134 1 9204 9204 0.094841 0 1 842730 29525 141 19770 19778 29063 29063 0.24429269809775178 LVKHGKEAL 9 Unmodified _LVKHGKEAL_ 0 0 0 REV__tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1 REV__tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.20654296875 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 152.64 1 152.64 152.14 153.14 0 0 0 0 0.23508 1 30577 30577 1.0715 0 1 + 29526 25323 19771 19779 29064 29064 0.10006039576853709 LVKHGKEAL 9 Unmodified _LVKHGKEAL_ 0 0 0 REV__tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1 REV__tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.2068176269531 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 153.65 1 153.65 153.15 154.15 0 0 0 0 0.23508 1 30790 30790 1.0715 0 1 + 29527 25323 19771 19779 29065 29065 0.10006039576853709 LVKHGKEAL 9 Unmodified _LVKHGKEAL_ 0 0 0 REV__tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1 REV__tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.2126770019531 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 129.61 1 124.79 124.29 125.29 -4.817 0 0 0 0.23508 1 24883 24883 2.7352 0 1 + 29528 25323 19771 19779 29066 29066 0.10006039576853709 LVKHGKEAL 9 Unmodified _LVKHGKEAL_ 0 0 0 REV__tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1 REV__tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.00537109375 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 136.66 1 131.77 131.27 132.27 -4.8951 0 0 0 0.23508 1 26266 26266 2.7352 0 1 + 29529 25323 19771 19779 29067 29067 0.10006039576853709 LVKHGKEAL 9 Unmodified _LVKHGKEAL_ 0 0 0 REV__tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1 REV__tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.0055236816406 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 146.01 1 141.01 140.51 141.51 -5 0 0 0 0.23508 1 28252 28252 2.7352 0 1 + 29530 25323 19771 19779 29068 29068 0.10006039576853709 LVKKGLLY 8 Unmodified _LVKKGLLY_ 0 0 0 ENST00000260197.11_1_11:121502781-121502922:+|nuORF ENST00000260197.11_1_11:121502781-121502922:+|nuORF ENST00000260197.11_1_11:121502781-121502922:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 466.7124328613281 2 467.310221 932.605889 -0.032403 -1.5142E-05 0.65506 0.00030611 0.62265 0.00029097 467.31059515247455 54.753 0.8719 51.615 51.064 51.936 -3.1377 39 24 2 0 0 0 0.89951 1 10052 10052 0.12286 0 1 6523800 29531 8277 19772 19780 29069 29069 0.1368901321333169 LVKKGLLY 8 Unmodified _LVKKGLLY_ 0 0 0 ENST00000260197.11_1_11:121502781-121502922:+|nuORF ENST00000260197.11_1_11:121502781-121502922:+|nuORF ENST00000260197.11_1_11:121502781-121502922:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 467.310221 932.605889 -0.28286 -0.00013218 0.84841 0.00039647 0.56554 0.00026428 467.3106239798508 54.337 0.82393 51.454 51.082 51.906 -2.8837 -0.082335 0.00015828 NaN 0.12286 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 10601000 29532 8277 19772 19780 0.1368901321333169 LVKKGLLY 8 Unmodified _LVKKGLLY_ 0 0 0 ENST00000260197.11_1_11:121502781-121502922:+|nuORF ENST00000260197.11_1_11:121502781-121502922:+|nuORF ENST00000260197.11_1_11:121502781-121502922:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 467.310221 932.605889 0.021333 9.9691E-06 0.51582 0.00024105 0.53716 0.00025102 467.31043358776304 54.675 0.70634 51.539 51.181 51.887 -3.1352 0.003426 -0.00015256 NaN 0.12286 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 8866900 29533 8277 19772 19780 0.1368901321333169 LVKLFKVKI 9 Unmodified _LVKLFKVKI_ 0 0 0 tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1 tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1 tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.791748046875 2 544.38372 1086.75289 0.46302 0.00025206 -3.0283 -0.0016486 -2.5653 -0.0013965 544.3810141529245 153.1 0.25177 147.88 147.75 148 -5.2209 8 6 2 0 0 0 0.88433 1 29681 29681 0 0 1 1143900 29534 26145 19773 19781 29070 29070 0.2129811009824607 LVKLIYLLL 9 Unmodified _LVKLIYLLL_ 0 0 0 REV__FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant REV__FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.4431457519531 3 363.254494 1086.74165 NaN NaN NaN NaN NaN NaN NaN 12.74 1 11.731 11.231 12.231 -1.0098 0 0 0 0.1963 1 1796 1796 0 0 1 + 29535 23517 19774 19782 29071 29071 0.20175288004134018 LVKLIYLLL 9 Unmodified _LVKLIYLLL_ 0 0 0 REV__FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant REV__FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.4430847167969 3 363.254494 1086.74165 NaN NaN NaN NaN NaN NaN NaN 12.805 1 11.676 11.176 12.176 -1.1293 0 0 0 0.1963 1 1605 1605 0 0 1 + 29536 23517 19774 19782 29072 29072 0.20175288004134018 LVKLLLMH 8 Unmodified _LVKLLLMH_ 0 0 0 nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;MYO16|p.A1585Rfs*18|2|0.37|ENSG00000041515|chr13:109141025-109141025|C/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF;MYO16|p.F842Sfs*17|6|0.36|ENSG00000041515|chr13:109009038-109009038|T/-|frameshift_variant;MYO16|p.K869Nfs*6|1|0.29|ENSG00000041515|chr13:109019782-109019782|A/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16 nc|ENSG00000041515|Q9Y6X6|MYO16 nc|ENSG00000041515|Q9Y6X6|MYO16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.87847900390625 3 322.877141 965.609594 NaN NaN NaN NaN NaN NaN NaN 6.9407 1 5.8961 5.3961 6.3961 -1.0446 0 0 0 0.21486 1 547 547 0 0 1 29537 1196 19775 19783 29073 29073 0.12541359715521594 LVKPIILLAD 10 Unmodified _LVKPIILLAD_ 0 0 0 REV__ENST00000492618.5_1_7:56127237-56129562:+|nuORF REV__ENST00000492618.5_1_7:56127237-56129562:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7767944335938 2 547.862818 1093.71108 0.32939 0.00018046 3.0313 0.0016607 3.3606 0.0018412 548.3671772687923 136.8 0.103 136.8 136.73 136.83 0 4 2 2 0 0 0 1.1344 1 27108 27108 0.69767 0 1 1190200 + 29538 16098 19776 19784 29074 29074 0.16797509619095763 LVKPKLRIK 9 Unmodified _LVKPKLRIK_ 0 0 0 REV__INTS1|p.Q467Afs*140|1|0.05|ENSG00000164880|chr7:1498439-1498440|-/A|frameshift_variant REV__INTS1|p.Q467Afs*140|1|0.05|ENSG00000164880|chr7:1498439-1498440|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7734375 2 547.892244 1093.76993 0.32709 0.00017921 -0.69883 -0.00038288 -0.37174 -0.00020367 548.3939302233856 129.62 0.17108 129.62 129.53 129.71 0 6 4 2 0 0 0 0.65565 1 25612 25612 0 0 1 953980 + 29539 17718 19777 19785 29075 29075 0.22680030704054843 LVKPKLRIK 9 Unmodified _LVKPKLRIK_ 0 0 0 REV__INTS1|p.Q467Afs*140|1|0.05|ENSG00000164880|chr7:1498439-1498440|-/A|frameshift_variant REV__INTS1|p.Q467Afs*140|1|0.05|ENSG00000164880|chr7:1498439-1498440|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7842407226562 2 547.892244 1093.76993 0.044155 2.4192E-05 -1.7042 -0.00093373 -1.6601 -0.00090954 548.3934039966068 48.667 0.10653 45.668 45.616 45.723 -2.999 4 2 2 0 0 0 0.65565 1 8890 8890 0 0 1 417610 + 29540 17718 19777 19785 29076 29076 0.22680030704054843 LVKRFLRKWV 10 Unmodified _LVKRFLRKWV_ 0 0 0 REV__nc|ENSG00000146755|Q86XT4-2|TRIM50 REV__nc|ENSG00000146755|Q86XT4-2|TRIM50 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.0498046875 4 336.971125 1343.8554 -0.66945 -0.00022559 0.84833 0.00028586 0.17888 6.0278E-05 337.2224652304849 13.391 1.6948 12.218 11.378 13.072 -1.173 71 48 2 0 0 0 0.91149 1 1688 1688 0 0 1 650040 + 29541 16897 19778 19786 29077 29077 0.1972219588972166 LVKRKSRH 8 Unmodified _LVKRKSRH_ 0 0 0 REV__ENSG00000135540|ENST00000343505|NHSL1;REV__nc|ENSG00000188158|Q6T4R5-4|NHS REV__ENSG00000135540|ENST00000343505|NHSL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.1225280761719 3 341.88932 1022.64613 -0.25787 -8.8164E-05 0.25505 8.72E-05 -0.0028196 -9.64E-07 341.88940224083126 38.481 0.53533 38.481 38.247 38.783 0 20 14 2 0 0 0 1.0276 1 7189 7189 0.45834 0 1 543760 + 29542 16276;19134 19779 19787 29078 29078 0.13571372656463154 LVKRKSRH 8 Unmodified _LVKRKSRH_ 0 0 0 REV__ENSG00000135540|ENST00000343505|NHSL1;REV__nc|ENSG00000188158|Q6T4R5-4|NHS REV__ENSG00000135540|ENST00000343505|NHSL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 341.88932 1022.64613 -0.021082 -7.2076E-06 -0.29973 -0.00010248 -0.32081 -0.00010968 341.889239239282 40.758 0.31438 38.218 38.069 38.383 -2.5398 -0.096961 -0.00048683 NaN 0.45834 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 564700 + 29543 16276;19134 19779 19787 0.13571372656463154 LVKRKSRH 8 Unmodified _LVKRKSRH_ 0 0 0 REV__ENSG00000135540|ENST00000343505|NHSL1;REV__nc|ENSG00000188158|Q6T4R5-4|NHS REV__ENSG00000135540|ENST00000343505|NHSL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 341.88932 1022.64613 -0.60458 -0.0002067 0.62144 0.00021246 0.016856 5.763E-06 341.8895290340884 40.735 0.48696 38.246 37.972 38.459 -2.4896 -0.069129 0.00045799 NaN 0.45834 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 684110 + 29544 16276;19134 19779 19787 0.13571372656463154 LVKRVIPLK 9 Unmodified _LVKRVIPLK_ 0 0 0 REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2758178710938 2 533.378969 1064.74339 NaN NaN NaN NaN NaN NaN NaN 164.4 1 159.33 158.83 159.83 -5.0648 0 0 0 0.19622 1 32054 32054 0.96228 0 1 + 29545 13704 19780 19788 29079 29079 0.21360341812737715 LVKSATGKK 9 Unmodified _LVKSATGKK_ 0 0 0 tr|U7T5A1|U7T5A1_FUSNUGlyceroldehydratasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00495PE=4SV=1 tr|U7T5A1|U7T5A1_FUSNUGlyceroldehydratasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00495PE=4SV=1 tr|U7T5A1|U7T5A1_FUSNUGlyceroldehydratasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00495PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.1965026855469 3 311.202682 930.586216 NaN NaN NaN NaN NaN NaN NaN 102.55 1 98.532 98.032 99.032 -4.0212 0 0 0 0.23508 1 19712 19712 0.26902 0 1 29546 26460 19781 19789 29080 29080 0.11814637202564882 LVLAPQIIDI 10 Unmodified _LVLAPQIIDI_ 0 0 0 REV__ENST00000570109.1_1_15:43426051-43427957:+|nuORF REV__ENST00000570109.1_1_15:43426051-43427957:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7799682617188 2 547.844625 1093.6747 NaN NaN NaN NaN NaN NaN NaN 158.82 1 158.82 158.32 159.32 0 0 0 0 0.22588 1 31889 31889 3.5965 0 1 + 29547 16419 19782 19790 29081 29081 0.13160632722383525 LVLEIIHRIP 10 Unmodified _LVLEIIHRIP_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.L291*|1|0.36|ENSG00000196367|chr7:98900691-98900691|T/-|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2996215820312 2 601.884616 1201.75468 NaN NaN NaN NaN NaN NaN NaN 178.28 1 173.49 172.99 173.99 -4.7898 0 0 0 0.22588 1 36474 36474 1.6526 0.17072 1 29548 26528;7260;26529 19783 19791 29082 29082 0.16187119116216309 LVLKLRPQV 9 Unmodified _LVLKLRPQV_ 0 0 0 ENSG00000183862|ENST00000329903|CNGA2 ENSG00000183862|ENST00000329903|CNGA2 ENSG00000183862|ENST00000329903|CNGA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.283935546875 2 533.360776 1064.707 NaN NaN NaN NaN NaN NaN NaN 166.36 1 161.57 161.07 162.07 -4.7898 0 0 0 0.23508 1 33411 33411 4.3292 0.38484 1 29549 6876 19784 19792 29083 29083 0.17723464916048215 LVLLMAFPFT 10 Unmodified _LVLLMAFPFT_ 0 0 0 REV__ENSG00000131389|ENST00000622186|SLC6A6 REV__ENSG00000131389|ENST00000622186|SLC6A6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3319702148438 2 576.330296 1150.64604 NaN NaN NaN NaN NaN NaN NaN 141.21 1 136.22 135.72 136.72 -4.9877 0 0 0 2.8426 1 27190 27190 6.6304 0 1 + 29550 16072 19785 19793 29084 29084 0.07674191821570275 LVLLPRDYY 9 Unmodified _LVLLPRDYY_ 0 0 0 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.E2016Rfs*13|1|0.27|ENSG00000053747|chr18:23901164-23901164|G/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3248901367188 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 141.45 1 136.8 136.3 137.3 -4.6493 0 0 0 0.19657 1 27941 27941 4.897 0 1 29551 1257 19786 19794 29085 29085 0.06935175545504535 LVLLVKRIHL 10 Unmodified _LVLLVKRIHL_ 0 0 0 REV__SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant REV__SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2744140625 2 602.418626 1202.8227 0.3912 0.00023566 0.94844 0.00057136 1.3396 0.00080702 602.4192963452258 137.75 0.24179 137.75 137.66 137.9 0 8 6 2 0 0 0 0.91149 1 27348 27348 1.8442 0 1 4487000 + 29552 19900 19787 19795 29086 29086 0.22939988766870556 LVLLVKRIHL 10 Unmodified _LVLLVKRIHL_ 0 0 0 REV__SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant REV__SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3019409179688 2 602.418626 1202.8227 0.38091 0.00022947 1.3309 0.00080173 1.7118 0.0010312 602.9199451613662 144.29 0.24307 139.35 139.17 139.41 -4.9445 10 6 2 0 0 0 0.91149 1 27840 27840 1.8442 0 1 3566000 + 29553 19900 19787 19795 29087 29087 0.22939988766870556 LVLLVLPGLK 10 Unmodified _LVLLVLPGLK_ 0 0 0 ENST00000225964.9_1_17:48265286-48266811:-|nuORF;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant ENST00000225964.9_1_17:48265286-48266811:-|nuORF ENST00000225964.9_1_17:48265286-48266811:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2865600585938 2 532.875728 1063.7369 0.26364 0.00014049 -3.0948 -0.0016491 -2.8311 -0.0015086 532.875902458305 162.61 0.10551 157.82 157.75 157.86 -4.7898 4 2 2 0 0 0 0.91149 1 32352 32352 0.45834 0 1 5206500 29554 619 19788 19796 29088 29088 0.20758403861350416 LVLRISVKIY 10 Unmodified _LVLRISVKIY_ 0 0 0 REV__MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant;REV__ENSG00000117983|ENST00000529681|MUC5B REV__ENSG00000117983|ENST00000529681|MUC5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2898559570312 2 602.394816 1202.77508 0.38733 0.00023332 2.9461 0.0017747 3.3335 0.0020081 602.3980576823506 132.4 0.17714 127.55 127.42 127.6 -4.8527 6 4 2 0 0 0 1.1344 1 25421 25421 0.043787 0 1 982870 + 29555 15534;23892 19789 19797 29089 29089 0.18180289776046266 LVLRKLPKV 9 Unmodified _LVLRKLPKV_ 0 0 0 REV__ENST00000532508.5_1_1:160249625-160254863:-|nuORF REV__ENST00000532508.5_1_1:160249625-160254863:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28662109375 2 533.378969 1064.74339 NaN NaN NaN NaN NaN NaN NaN 162.89 1 157.75 157.25 158.25 -5.1438 0 0 0 0.23508 1 31668 31668 2.3027 0 1 + 29556 22787 19790 19798 29090 29090 0.21360341812737715 LVLSLKETY 9 Unmodified _LVLSLKETY_ 0 0 0 tr|U7SW01|U7SW01_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01404PE=4SV=1 tr|U7SW01|U7SW01_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01404PE=4SV=1 tr|U7SW01|U7SW01_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01404PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2772216796875 2 533.313158 1064.61176 0.54652 0.00029147 0.12823 6.8386E-05 0.67475 0.00035985 533.3130122820086 104.37 0.48814 100.02 99.692 100.18 -4.346 24 13 2 0 0 0 0.30056 1 20019 20019 2.6312 0 1 1927400 29557 26243 19791 19799 29091 29091 0.08204066934331422 LVLSLKETY 9 Unmodified _LVLSLKETY_ 0 0 0 tr|U7SW01|U7SW01_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01404PE=4SV=1 tr|U7SW01|U7SW01_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01404PE=4SV=1 tr|U7SW01|U7SW01_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01404PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.313158 1064.61176 0.4231 0.00022565 -0.40366 -0.00021528 0.019447 1.0371E-05 533.3128271018352 100.12 0.5138 100.12 99.862 100.38 0 0.11377 -0.00027851 NaN 2.6312 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1793100 29558 26243 19791 19799 0.08204066934331422 LVLVLKIRPQ 10 Unmodified _LVLVLKIRPQ_ 0 0 0 ENST00000534591.1_1_11:64876790-64877821:+|nuORF ENST00000534591.1_1_11:64876790-64877821:+|nuORF ENST00000534591.1_1_11:64876790-64877821:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2553100585938 2 589.902808 1177.79106 NaN NaN NaN NaN NaN NaN NaN 87.666 1 83.873 83.373 84.373 -3.7926 0 0 0 0.22588 1 17144 17144 1.4819 0.15237 1 29559 11008 19792 19800 29092 29092 0.20927996012915173 LVLVTPAH 8 Unmodified _LVLVTPAH_ 0 0 0 REV__ALG12|p.A295V|1|0.16|ENSG00000182858|chr22:49907829-49907829|G/A|missense_variant REV__ALG12|p.A295V|1|0.16|ENSG00000182858|chr22:49907829-49907829|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2471008300781 2 425.263271 848.511988 NaN NaN NaN NaN NaN NaN NaN 49.361 1 46.48 45.98 46.98 -2.8811 0 0 0 0.21486 1 9350 9350 5.7604 0 1 + 29560 13010 19793 19801 29093 29093 0.08167294111035517 LVLVVARRLPR 11 Unmodified _LVLVVARRLPR_ 0 0 0 ENST00000331569.5_1_8:37554703-37555105:+|nuORF ENST00000331569.5_1_8:37554703-37555105:+|nuORF ENST00000331569.5_1_8:37554703-37555105:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 646.4178466796875 2 646.437881 1290.86121 NaN NaN NaN NaN NaN NaN NaN 166.28 1 161.49 160.99 161.99 -4.7898 0 0 0 0.23698 1 33387 33387 1.3295 0.87119 1 29561 8778 19794 19802 29094 29094 0.22741294401407686 LVLVWFVPTW 10 Unmodified _LVLVWFVPTW_ 0 0 0 REV__nc|ENSG00000186854|Q86V40-2|TRABD2A REV__nc|ENSG00000186854|Q86V40-2|TRABD2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.74853515625 2 630.362985 1258.71142 0.66801 0.00042109 0.97533 0.00061481 1.6433 0.0010359 630.3634021601098 105.51 0.74043 105.51 105.17 105.91 0 40 20 3 0 0 0 0.82094 1 20776 20776 21.747 21.747 1 7674400 + 29562 19058 19795 19803 29095 29095 0.09240929338943715 LVLVWVKKP 9 Unmodified _LVLVWVKKP_ 0 0 0 REV__ENST00000494513.1_1_6:160148641-160157384:+|nuORF REV__ENST00000494513.1_1_6:160148641-160157384:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27783203125 2 541.360245 1080.70594 NaN NaN NaN NaN NaN NaN NaN 165.19 1 160.4 159.9 160.9 -4.7898 0 0 0 0.19636 1 33065 33065 2.4985 2.3707 1 + 29563 22365 19796 19804 29096 29096 0.16881250547135096 LVMNDRDQPRE 11 Unmodified _LVMNDRDQPRE_ 0 0 0 REV__nc|ENSG00000176248|Q9UJX6-2|ANAPC2 REV__nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2245788574219 3 458.226109 1371.6565 NaN NaN NaN NaN NaN NaN NaN 28.906 1 27.151 26.651 27.651 -1.7552 0 0 0 0.22632 1 4897 4897 0.172 0.12821 1 + 29564 18504 19797 19805 29097 29097 -0.014464772619476207 LVMNLEFSI 9 Unmodified _LVMNLEFSI_ 0 0 0 SPP2|p.F151Lfs*24|1|0.13|ENSG00000072080|chr2:234066537-234066537|T/-|frameshift_variant;ENSG00000072080|ENST00000168148|SPP2 SPP2|p.F151Lfs*24|1|0.13|ENSG00000072080|chr2:234066537-234066537|T/-|frameshift_variant SPP2|p.F151Lfs*24|1|0.13|ENSG00000072080|chr2:234066537-234066537|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2848510742188 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 138.35 1 133.71 133.21 134.21 -4.6413 0 0 0 0.23508 1 27315 27315 11.64 0.81637 1 29565 1456 19798 19806 29098 29098 0.02792151511107477 LVMNVVKI 8 Unmodified _LVMNVVKI_ 0 0 0 REV__nc|ENSG00000186300|Q8NEP9-2|ZNF555 REV__nc|ENSG00000186300|Q8NEP9-2|ZNF555 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23907470703125 2 458.288431 914.562309 0.69138 0.00031685 1.2868 0.0005897 1.9781 0.00090656 458.2887900870065 107.59 0.31238 103.46 103.35 103.66 -4.135 13 8 2 0 0 0 1.0095 1 20696 20696 2.5775 0 1 446370 + 29566 19026 19799 19807 29099 29099 0.10161080444538584 LVMPMTGT 8 Unmodified _LVMPMTGT_ 0 0 0 ENST00000511143.5_1_13:33092131-33101646:-|nuORF;ENST00000512755.1_1_13:33101514-33101649:-|nuORF;ENST00000267068.5_2_13:33096368-33101649:-|nuORF ENST00000511143.5_1_13:33092131-33101646:-|nuORF ENST00000511143.5_1_13:33092131-33101646:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2478942871094 2 425.214075 848.413596 NaN NaN NaN NaN NaN NaN NaN 46.201 1 43.334 42.834 43.834 -2.8666 0 0 0 0.2396 1 8404 8404 0.0082765 0 1 29567 8378 19800 19808 29100 29100 -0.01667393520654059 LVMQLVRTA 9 Unmodified _LVMQLVRTA_ 0 0 0 REV__ENSG00000159792|ENST00000291041|PSKH1 REV__ENSG00000159792|ENST00000291041|PSKH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.2063293457031 3 344.207438 1029.60049 NaN NaN NaN NaN NaN NaN NaN 79.664 1 75.988 75.488 76.488 -3.676 0 0 0 0.23508 1 15181 15181 5.2969 1.1074 1 + 29568 17382 19801 19809 29101 29101 0.08686966359209691 LVMRFDSDV 9 Unmodified _LVMRFDSDV_ 0 0 0 REV__LTN1|p.S725Ifs*7|1|0.06|ENSG00000198862|chr21:28960696-28960697|-/ATGTTAAAAA|frameshift_variant REV__LTN1|p.S725Ifs*7|1|0.06|ENSG00000198862|chr21:28960696-28960697|-/ATGTTAAAAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2739868164062 2 541.270967 1080.52738 0.10904 5.9019E-05 1.0942 0.00059223 1.2032 0.00065125 541.271589590923 95.024 1.2113 95.024 94.209 95.42 0 114 34 5 0 0 0 0.10573 1 18560 18560 53.833 6.2384 1 70043000 + 29569 19465 19802 19810 29102 29102 -0.00966207154078802 LVMVVKLTK 9 Unmodified _LVMVVKLTK_ 0 0 0 REV__ENST00000449503.6_1_3:57743439-57817152:+|nuORF REV__ENST00000449503.6_1_3:57743439-57817152:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.2278747558594 3 344.227951 1029.66202 NaN NaN NaN NaN NaN NaN NaN 91.444 1 87.519 87.019 88.019 -3.9251 0 0 0 0.1964 1 17901 17901 0.0033805 0 1 + 29570 21789 19803 19811 29103 29103 0.14837898058453902 LVMVVKLTK 9 Unmodified _LVMVVKLTK_ 0 0 0 REV__ENST00000449503.6_1_3:57743439-57817152:+|nuORF REV__ENST00000449503.6_1_3:57743439-57817152:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.165771484375 3 344.227951 1029.66202 NaN NaN NaN NaN NaN NaN NaN 51.234 1 48.188 47.688 48.688 -3.0453 0 0 0 0.23508 1 9405 9405 0.26902 0 1 + 29571 21789 19803 19811 29104 29104 0.14837898058453902 LVMVVKLTK 9 Unmodified _LVMVVKLTK_ 0 0 0 REV__ENST00000449503.6_1_3:57743439-57817152:+|nuORF REV__ENST00000449503.6_1_3:57743439-57817152:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.2279052734375 3 344.227951 1029.66202 NaN NaN NaN NaN NaN NaN NaN 100.46 1 96.163 95.663 96.663 -4.297 0 0 0 0.19624 1 19216 19216 0.0033805 0 1 + 29572 21789 19803 19811 29105 29105 0.14837898058453902 LVMYLTTLL 9 Unmodified _LVMYLTTLL_ 0 0 0 ENSG00000171133|ENST00000302681|OR2K2 ENSG00000171133|ENST00000302681|OR2K2 ENSG00000171133|ENST00000302681|OR2K2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.276611328125 2 533.814479 1065.6144 0.13531 7.2233E-05 -1.1581 -0.00061822 -1.0228 -0.00054598 534.3135186335005 141.64 0.17484 136.99 136.85 137.02 -4.6493 5 4 2 0 0 0 0.61568 1 27987 27987 0.029283 0 1 1361500 29573 6126 19804 19812 29106 29106 0.08422199067626934 LVNEFINRQK 10 Unmodified _LVNEFINRQK_ 0 0 0 ENSG00000170178|ENST00000406506|HOXD12 ENSG00000170178|ENST00000406506|HOXD12 ENSG00000170178|ENST00000406506|HOXD12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7742919921875 2 630.856586 1259.69862 NaN NaN NaN NaN NaN NaN NaN 143.29 1 138.64 138.14 139.14 -4.656 0 0 0 0.22559 1 28341 28341 17.113 3.2068 1 29574 6046 19805 19813 29107 29107 0.07915866208736588 LVNIVKMFR 9 Unmodified _LVNIVKMFR_ 0 0 0 FASTKD5|p.T366I|1|0.14|ENSG00000215251|chr20:3147974-3147974|G/A|missense_variant;ENSG00000215251|ENST00000380266|FASTKD5 FASTKD5|p.T366I|1|0.14|ENSG00000215251|chr20:3147974-3147974|G/A|missense_variant FASTKD5|p.T366I|1|0.14|ENSG00000215251|chr20:3147974-3147974|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 560.3032836914062 2 560.338987 1118.66342 0.55771 0.00031251 2.5545 0.0014314 3.1122 0.0017439 560.3403764556017 168.79 0.20279 163.92 163.83 164.03 -4.873 9 5 2 0 0 0 0.54851 1 33297 33297 4.7159 4.1995 1 19757000 29575 7742 19806 19814 29108 29108 0.10883532147249753 LVNIVKMFR 9 Unmodified _LVNIVKMFR_ 0 0 0 FASTKD5|p.T366I|1|0.14|ENSG00000215251|chr20:3147974-3147974|G/A|missense_variant;ENSG00000215251|ENST00000380266|FASTKD5 FASTKD5|p.T366I|1|0.14|ENSG00000215251|chr20:3147974-3147974|G/A|missense_variant FASTKD5|p.T366I|1|0.14|ENSG00000215251|chr20:3147974-3147974|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 560.338987 1118.66342 0.20234 0.00011338 2.004 0.0011229 2.2064 0.0012363 560.841574303406 168.67 0.21104 163.88 163.76 163.97 -4.7898 -0.010118 -2.4265E-05 NaN 4.7159 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 10573000 29576 7742 19806 19814 0.10883532147249753 LVNIVKMFR 9 Unmodified _LVNIVKMFR_ 0 0 0 FASTKD5|p.T366I|1|0.14|ENSG00000215251|chr20:3147974-3147974|G/A|missense_variant;ENSG00000215251|ENST00000380266|FASTKD5 FASTKD5|p.T366I|1|0.14|ENSG00000215251|chr20:3147974-3147974|G/A|missense_variant FASTKD5|p.T366I|1|0.14|ENSG00000215251|chr20:3147974-3147974|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 560.338987 1118.66342 0.1803 0.00010103 1.7018 0.00095357 1.8821 0.0010546 560.3398631871128 168.81 0.17328 163.88 163.79 163.96 -4.9295 -0.014567 -0.00036299 NaN 4.7159 9 4 3 NaN NaN NaN NaN 0 NaN NaN 0 18733000 29577 7742 19806 19814 0.10883532147249753 LVNLYKVH 8 Unmodified _LVNLYKVH_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;ENST00000482114.1_1_4:123130334-123145991:+|nuORF nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 493.29534912109375 2 493.295102 984.575651 NaN NaN NaN NaN NaN NaN NaN 104.72 1 100.5 100 101 -4.2183 0 0 0 0.22722 1 20603 20603 1.7423 1.0609 1 29578 4201 19807 19815 29109 29109 0.08274654548131366 LVPDDAKSSY 10 Unmodified _LVPDDAKSSY_ 0 0 0 nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A nc|ENSG00000151553|Q5W0V3-2|FHIP2A nc|ENSG00000151553|Q5W0V3-2|FHIP2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7680053710938 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 91.556 1 87.748 87.248 88.248 -3.8083 0 0 0 0.22576 1 17530 17530 14.838 2.5976 1 29579 4872 19808 19816 29110 29110 -0.01386874864465426 LVPEEVGW 8 Unmodified _LVPEEVGW_ 0 0 0 REV__ENST00000339728.5_1_2:235404101-235404395:-|nuORF REV__ENST00000339728.5_1_2:235404101-235404395:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 175.29 1 170.4 169.9 170.9 -4.8916 0 0 0 0.21486 1 34937 34937 0.45834 0 1 + 29580 20700 19809 19817 29111 29111 0.003546936318684857 LVPEVVSRG 9 Unmodified _LVPEVVSRG_ 0 0 0 REV__ENST00000567039.1_1_15:43620629-43622752:-|nuORF REV__ENST00000567039.1_1_15:43620629-43622752:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.2008972167969 3 319.190553 954.549831 NaN NaN NaN NaN NaN NaN NaN 127.01 1 122.22 121.72 122.72 -4.7958 0 0 0 0.23508 1 24381 24381 0.26902 0 1 + 29581 18057 19810 19818 29112 29112 0.07073760305854648 LVPHNWHIY 9 Unmodified _LVPHNWHIY_ 0 0 0 REV__ENSG00000172469|ENST00000358812|MANEA REV__ENSG00000172469|ENST00000358812|MANEA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2581787109375 2 589.808908 1177.60326 0.41774 0.00024639 -0.49692 -0.00029309 -0.07918 -4.6701E-05 589.8084054234188 24.336 0.51905 22.801 22.575 23.094 -1.5342 34 14 3 0 0 0 0.72255 1 3981 3981 5.2307 0.47466 1 2752600 + 29582 18288 19811 19819 29113 29113 0.021565578083709624 LVPHTAQRG 9 Unmodified _LVPHTAQRG_ 0 0 0 ENST00000493379.1_1_6:33232539-33235000:-|nuORF;VPS52|p.Q497Pfs*33|1|0.25|ENSG00000223501|chr6:33264408-33264409|-/G|frameshift_variant;VPS52|p.L502Wfs*63|1|0.48|ENSG00000223501|chr6:33264395-33264395|C/-|frameshift_variant;nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52 ENST00000493379.1_1_6:33232539-33235000:-|nuORF ENST00000493379.1_1_6:33232539-33235000:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2669372558594 2 489.777608 977.540663 -0.29829 -0.00014609 0.21674 0.00010615 -0.081551 -3.9942E-05 489.7776653960864 17.856 1.7038 16.583 16.317 18.021 -1.2722 121 48 4 0 0 0 0.57447 1 2775 2775 14.838 2.3067 1 10848000 29583 7775 19812 19820 29114 29114 0.05099411740184223 LVPHTTSLRQ 10 Unmodified _LVPHTTSLRQ_ 0 0 0 REV__ENST00000477973.3_2_3:72426144-72426342:-|nuORF REV__ENST00000477973.3_2_3:72426144-72426342:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3224487304688 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 148.78 1 144.07 143.57 144.57 -4.7095 0 0 0 2.8426 1 29547 29547 0.043787 0 1 + 29584 22128 19813 19821 29115 29115 0.07655908145943613 LVPLLYDF 8 Unmodified _LVPLLYDF_ 0 0 0 SETDB1|p.R610W|1|0.28|ENSG00000143379|chr1:150950705-150950705|C/T|missense_variant;nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1 SETDB1|p.R610W|1|0.28|ENSG00000143379|chr1:150950705-150950705|C/T|missense_variant SETDB1|p.R610W|1|0.28|ENSG00000143379|chr1:150950705-150950705|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2764892578125 2 490.278586 978.54262 NaN NaN NaN NaN NaN NaN NaN 107.99 1 103.67 103.17 104.17 -4.32 0 0 0 0.21181 1 21273 21273 15.768 0 1 29585 4482 19814 19822 29116 29116 0.05249027705417575 LVPLVLKIKE 10 Unmodified _LVPLVLKIKE_ 0 0 0 tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1 tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1 tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3253173828125 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 151.49 1 151.49 150.99 151.99 0 0 0 0 0.22588 1 30336 30336 3.2813 1.9518 1 29586 26409 19815 19823 29117 29117 0.19957771544500247 LVPRKKKHVV 10 Unmodified _LVPRKKKHVV_ 0 0 0 REV__ENST00000495775.1_1_2:148683508-148684840:+|nuORF REV__ENST00000495775.1_1_2:148683508-148684840:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.288330078125 2 602.40605 1202.79755 NaN NaN NaN NaN NaN NaN NaN 76.36 1 72.637 72.137 73.137 -3.7227 0 0 0 2.8426 1 14457 14457 0.0013812 0 1 + 29587 12934 19816 19824 29118 29118 0.20425933964293108 LVQAVFIVKY 10 Unmodified _LVQAVFIVKY_ 0 0 0 REV__nc|ENSG00000142609|Q9C0B2|CFAP74 REV__nc|ENSG00000142609|Q9C0B2|CFAP74 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2685546875 2 590.360442 1178.70633 NaN NaN NaN NaN NaN NaN NaN 118.45 1 113.95 113.45 114.45 -4.502 0 0 0 2.8426 1 23359 23359 0.043787 0 1 + 29588 16679 19817 19825 29119 29119 0.12412625476326866 LVQELKNI 8 Unmodified _LVQELKNI_ 0 0 0 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74346923828125 2 478.792392 955.570232 -0.041499 -1.987E-05 0.4194 0.00020081 0.3779 0.00018094 478.7925509651715 75.455 0.4101 72.04 71.851 72.261 -3.4151 25 11 3 0 0 0 0.45067 1 14695 14695 30.225 0 1 4955400 29589 7671 19818 19826 29120 29120 0.09066930965661868 LVQKRLHWYYY 11 Unmodified _LVQKRLHWYYY_ 0 0 0 REV__FRMD6|p.K193Rfs*5|1|0.41|ENSG00000139926|chr14:51708091-51708091|G/-|frameshift_variant REV__FRMD6|p.K193Rfs*5|1|0.41|ENSG00000139926|chr14:51708091-51708091|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.69189453125 3 523.617266 1567.82997 NaN NaN NaN NaN NaN NaN NaN 163.98 1 158.92 158.42 159.42 -5.0648 0 0 0 0.22632 1 31944 31944 0.00056442 0 1 + 29590 16552 19819 19827 29121 29121 0.06876676576666796 LVQLSLQQLVL 11 Unmodified _LVQLSLQQLVL_ 0 0 0 ENST00000487088.5_1_9:5832547-5832913:-|nuORF;ENST00000214893.9_1_9:5823966-5832826:-|nuORF;ENST00000475005.1_1_9:5812814-5833063:-|nuORF;ERMP1|p.L627Wfs*6|1|0.25|ENSG00000099219|chr9:5805061-5805061|A/-|frameshift_variant;ERMP1|p.T651Pfs*3|1|0.36|ENSG00000099219|chr9:5801292-5801292|T/-|frameshift_variant;ENSG00000099219|ENST00000339450|ERMP1 ENST00000487088.5_1_9:5832547-5832913:-|nuORF ENST00000487088.5_1_9:5832547-5832913:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 627.4866333007812 2 627.395013 1252.77547 NaN NaN NaN NaN NaN NaN NaN 167.25 1 162.36 161.86 162.86 -4.8916 0 0 0 0.22632 1 32869 32869 1.4551 1.4289 1 29591 1882 19820 19828 29122 29122 0.15919664705234027 LVQLTDVQP 9 Unmodified _LVQLTDVQP_ 0 0 0 ENSG00000109944|ENST00000227349|JHY;ENST00000534362.1_1_11:122805775-122817581:+|nuORF ENSG00000109944|ENST00000227349|JHY ENSG00000109944|ENST00000227349|JHY MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 507.2986755371094 2 506.787307 1011.56006 -0.29187 -0.00014792 2.7729 0.0014053 2.4811 0.0012574 506.7886245134292 133.49 0.55763 128.62 128.26 128.82 -4.8726 21 15 2 0 0 0 0.25976 1 25619 25619 6.4869 3.3829 1 665890 29592 2550 19821 19829 29123 29123 0.05474323240423473 LVQLTDVQP 9 Unmodified _LVQLTDVQP_ 0 0 0 ENSG00000109944|ENST00000227349|JHY;ENST00000534362.1_1_11:122805775-122817581:+|nuORF ENSG00000109944|ENST00000227349|JHY ENSG00000109944|ENST00000227349|JHY MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 506.787307 1011.56006 0.11313 5.7333E-05 0.33889 0.00017175 0.45202 0.00022908 506.78746806183125 133.45 0.57123 128.63 128.16 128.73 -4.8175 0.0055534 -0.0005244 NaN 6.4869 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1502200 29593 2550 19821 19829 0.05474323240423473 LVQQQFGMK 9 Unmodified _LVQQQFGMK_ 0 0 0 REV__nc|ENSG00000118197|Q5T1V6-2|DDX59 REV__nc|ENSG00000118197|Q5T1V6-2|DDX59 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017822265625 3 360.19531 1077.5641 NaN NaN NaN NaN NaN NaN NaN 5.3768 1 4.3368 3.8368 4.8368 -1.04 0 0 0 0.23508 1 259 259 1.0715 0 1 + 29594 15543 19822 19830 29124 29124 0.028420894624787252 LVQRWHLF 8 Unmodified _LVQRWHLF_ 0 0 0 REV__nc|ENSG00000291110|Q309B1|TRIM16L REV__nc|ENSG00000291110|Q309B1|TRIM16L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 549.7471923828125 2 549.813993 1097.61343 NaN NaN NaN NaN NaN NaN NaN 7.1465 1 6.1317 5.6317 6.6317 -1.0148 0 0 0 0.2396 1 550 550 0.0082765 0 1 + 29595 19710 19823 19831 29125 29125 0.06853165533584615 LVRAEPTTA 9 Unmodified _LVRAEPTTA_ 0 0 0 REV__ENSG00000125676|ENST00000245838|THOC2 REV__ENSG00000125676|ENST00000245838|THOC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7238464355469 2 479.271824 956.529095 -0.15111 -7.2422E-05 0.87084 0.00041737 0.71973 0.00034495 479.272209505805 56.072 0.57615 53.177 52.863 53.439 -2.8944 32 16 3 0 0 0 0.76312 1 10760 10760 16.149 2.2431 1 11764000 + 29596 15822 19824 19832 29126 29126 0.04909169926168033 LVRFRKGK 8 Unmodified _LVRFRKGK_ 0 0 0 REV__nc|ENSG00000167670|Q13111-2|CHAF1A REV__nc|ENSG00000167670|Q13111-2|CHAF1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.5262756347656 3 335.222299 1002.64507 NaN NaN NaN NaN NaN NaN NaN 22.269 1 22.269 21.769 22.769 0 0 0 0 0.2386 1 3762 3762 0.0082765 0 1 + 29597 17954 19825 19833 29127 29127 0.14385158287564082 LVRFSKTML 9 Unmodified _LVRFSKTML_ 0 0 0 REV__ENST00000526132.5_1_1:52522019-52530572:+|nuORF REV__ENST00000526132.5_1_1:52522019-52530572:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7868041992188 2 547.823169 1093.63179 NaN NaN NaN NaN NaN NaN NaN 61.91 1 58.948 58.448 59.448 -2.9614 0 0 0 0.1964 1 11938 11938 1.2148 1.1416 1 + 29598 22688 19826 19834 29128 29128 0.0887153939329437 LVRFYQRFPEE 11 Unmodified _LVRFYQRFPEE_ 0 0 0 ENSG00000157823|ENST00000336418|AP3S2;nc|ENSG00000157823|P59780-2|AP3S2;ENST00000560184.5_1_15:90408823-90437190:-|nuORF ENSG00000157823|ENST00000336418|AP3S2 ENSG00000157823|ENST00000336418|AP3S2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3875122070312 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 154.01 1 154.01 153.51 154.51 0 0 0 0 0.22632 1 30864 30864 0.026206 0 1 29599 5141 19827 19835 29129 29129 0.039878069259884796 LVRGPAER 8 Unmodified _LVRGPAER_ 0 0 0 ENST00000394235.6_1_4:140060608-140098371:-|nuORF ENST00000394235.6_1_4:140060608-140098371:-|nuORF ENST00000394235.6_1_4:140060608-140098371:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.2635192871094 2 449.266876 896.519199 NaN NaN NaN NaN NaN NaN NaN 59.299 1 56.076 55.576 56.576 -3.2237 0 0 0 0.23538 1 11075 11075 1.7423 0 1 29600 9408 19828 19836 29130 29130 0.06680026711455866 LVRLVIHL 8 Unmodified _LVRLVIHL_ 0 0 0 REV__ENST00000427063.6_1_10:29710449-29710551:+|nuORF REV__ENST00000427063.6_1_10:29710449-29710551:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.775146484375 2 481.829112 961.643671 NaN NaN NaN NaN NaN NaN NaN 145.92 1 140.92 140.42 141.42 -5 0 0 0 0.21486 1 28229 28229 10.183 4.423 1 + 29601 21575 19829 19837 29131 29131 0.16131524198794978 LVRMWRVRWRY 11 Unmodified _LVRMWRVRWRY_ 0 0 0 ENSG00000184345|ENST00000333127|IQCF2 ENSG00000184345|ENST00000333127|IQCF2 ENSG00000184345|ENST00000333127|IQCF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2735595703125 3 540.97339 1619.89834 0.29824 0.00016134 -2.4118 -0.0013047 -2.1136 -0.0011434 541.3059670581117 137.03 0.20192 137.03 136.9 137.1 0 7 5 2 0 0 0 0.82353 1 27151 27151 0.50596 0.13928 1 3302500 29602 6905 19830 19838 29132 29132 0.11318642675519186 LVRMWRVRWRY 11 Unmodified _LVRMWRVRWRY_ 0 0 0 ENSG00000184345|ENST00000333127|IQCF2 ENSG00000184345|ENST00000333127|IQCF2 ENSG00000184345|ENST00000333127|IQCF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2689208984375 3 540.97339 1619.89834 NaN NaN NaN NaN NaN NaN NaN 90.114 1 90.114 89.614 90.614 0 0 0 0 0.22632 1 17604 17604 0.58532 0.52805 1 29603 6905 19830 19838 29133 29133 0.11318642675519186 LVRMWRVRWRY 11 Unmodified _LVRMWRVRWRY_ 0 0 0 ENSG00000184345|ENST00000333127|IQCF2 ENSG00000184345|ENST00000333127|IQCF2 ENSG00000184345|ENST00000333127|IQCF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2653198242188 3 540.97339 1619.89834 0.44886 0.00024282 4.4093 0.0023853 4.8582 0.0026281 541.308925478082 151.73 0.20549 146.56 146.38 146.59 -5.1759 6 5 2 0 0 0 0.96197 1 29375 29375 1.2148 1.12 1 800300 29604 6905 19830 19838 29134 29134 0.11318642675519186 LVRNHRVRWFW 11 Unmodified _LVRNHRVRWFW_ 0 0 0 REV__ENSG00000102996|ENST00000219271|MMP15 REV__ENSG00000102996|ENST00000219271|MMP15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.682373046875 3 523.628499 1567.86367 NaN NaN NaN NaN NaN NaN NaN 153.78 1 149.01 148.51 149.51 -4.7684 0 0 0 0.23698 1 30560 30560 0.50596 0.09769 1 + 29605 14859 19831 19839 29135 29135 0.10245142859048428 LVRRDFTF 8 Unmodified _LVRRDFTF_ 0 0 0 REV__ENSG00000185361|ENST00000327473|TNFAIP8L1 REV__ENSG00000185361|ENST00000327473|TNFAIP8L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 527.2972412109375 2 527.295633 1052.57671 NaN NaN NaN NaN NaN NaN NaN 171.27 1 166.4 165.9 166.9 -4.873 0 0 0 0.23025 1 33937 33937 1.4551 0 1 + 29606 18963 19832 19840 29136 29136 0.05252868917023079 LVRREPLP 8 Unmodified _LVRREPLP_ 0 0 0 REV__ENST00000397887.7_1_21:46269710-46269758:-|nuORF REV__ENST00000397887.7_1_21:46269710-46269758:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2764587402344 2 490.306001 978.597449 NaN NaN NaN NaN NaN NaN NaN 86.299 1 82.572 82.072 83.072 -3.727 0 0 0 0.21486 1 16869 16869 6.3541 0.59368 1 + 29607 21315 19833 19841 29137 29137 0.1072945929670368 LVRTYIFINK 10 Unmodified _LVRTYIFINK_ 0 0 0 REV__ENST00000373910.8_1_10:60128500-60128563:+|nuORF REV__ENST00000373910.8_1_10:60128500-60128563:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 423.5923767089844 3 422.923807 1265.74959 -0.10022 -4.2384E-05 0.70622 0.00029868 0.606 0.00025629 422.9240029105674 126.25 0.5083 121.55 121.25 121.76 -4.6998 26 13 3 0 0 0 0.48215 1 24294 24294 0.26539 0.093389 1 1615900 + 29608 21048 19834 19842 29138 29138 0.12734815253611487 LVRTYIFINK 10 Unmodified _LVRTYIFINK_ 0 0 0 REV__ENST00000373910.8_1_10:60128500-60128563:+|nuORF REV__ENST00000373910.8_1_10:60128500-60128563:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 422.923807 1265.74959 -0.040742 -1.7231E-05 0.11476 4.8533E-05 0.074013 3.1302E-05 422.92384100526635 125.99 0.52426 121.39 121.19 121.71 -4.5984 -0.095092 -7.0932E-05 NaN 0.26539 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1334300 + 29609 21048 19834 19842 0.12734815253611487 LVRTYIFINK 10 Unmodified _LVRTYIFINK_ 0 0 0 REV__ENST00000373910.8_1_10:60128500-60128563:+|nuORF REV__ENST00000373910.8_1_10:60128500-60128563:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 422.923807 1265.74959 0.2456 0.00010387 -0.23658 -0.00010005 0.0090282 3.8183E-06 422.9237249941018 126.31 0.52937 121.52 121.25 121.78 -4.7958 0.028516 -0.00051669 NaN 0.26539 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 874050 + 29610 21048 19834 19842 0.12734815253611487 LVRTYIFINK 10 Unmodified _LVRTYIFINK_ 0 0 0 REV__ENST00000373910.8_1_10:60128500-60128563:+|nuORF REV__ENST00000373910.8_1_10:60128500-60128563:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 422.923807 1265.74959 -0.10022 -4.2384E-05 0.70622 0.00029868 0.606 0.00025629 422.9240029105674 126.25 0.5083 121.55 121.25 121.76 -4.6998 0.066576 0.0006795 NaN 0.26539 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1615900 + 29611 21048 19834 19842 0.12734815253611487 LVSDIIDKY 9 Unmodified _LVSDIIDKY_ 0 0 0 REV__nc|ENSG00000243967|Q86XG9|NBPF5P REV__nc|ENSG00000243967|Q86XG9|NBPF5P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2837524414062 2 533.294965 1064.57538 NaN NaN NaN NaN NaN NaN NaN 111.69 1 111.69 111.19 112.19 0 0 0 0 0.23508 1 21972 21972 12.532 0.89125 1 + 29612 19009 19835 19843 29139 29139 0.04567190037596447 LVSEKYWKV 9 Unmodified _LVSEKYWKV_ 0 0 0 nc|ENSG00000121481|Q99496-2|RNF2;ENSG00000121481|ENST00000367510|RNF2 nc|ENSG00000121481|Q99496-2|RNF2 nc|ENSG00000121481|Q99496-2|RNF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3247680664062 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 91.896 1 88.088 87.588 88.588 -3.8083 0 0 0 0.19687 1 17601 17601 8.1555 8.0917 1 29613 3179 19836 19844 29140 29140 0.06935175545481798 LVSHPFAC 8 Unmodified _LVSHPFAC_ 0 0 0 ENST00000229379.2_1_12:120878474-120878516:+|nuORF ENST00000229379.2_1_12:120878474-120878516:+|nuORF ENST00000229379.2_1_12:120878474-120878516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2157897949219 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 175.6 1 175.6 175.1 176.1 0 0 0 0 0.21486 1 36378 36378 5.7604 2.8712 1 29614 8153 19837 19845 29141 29141 -0.019854982088986617 LVSLAVDKQL 10 Unmodified _LVSLAVDKQL_ 0 0 0 REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.781005859375 2 543.331882 1084.64921 0.13896 7.5503E-05 -2.1692 -0.0011786 -2.0303 -0.0011031 543.8322475738552 88.405 0.14294 84.613 84.518 84.661 -3.7926 5 3 2 0 0 0 1.1149 1 17281 17281 0.26539 0 1 952020 + 29615 13845 19838 19846 29142 29142 0.11027158199954101 LVSLAVTAT 9 Unmodified _LVSLAVTAT_ 0 0 0 REV__sp|P69336|US19_HCMVATransmembraneproteinHWLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US19PE=2SV=1 REV__sp|P69336|US19_HCMVATransmembraneproteinHWLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US19PE=2SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21649169921875 2 437.765843 873.517133 -0.01928 -8.4399E-06 0.19702 8.6249E-05 0.17774 7.7809E-05 437.76589710074376 127.7 0.84471 123.01 122.61 123.45 -4.6998 39 23 2 0 0 0 0.36689 1 24574 24574 42.095 0 1 4546000 + 29616 24679 19839 19847 29143 29143 0.0753155318300287 LVSLPHQL 8 Unmodified _LVSLPHQL_ 0 0 0 ENSG00000055483|ENST00000449938|USP36 ENSG00000055483|ENST00000449938|USP36 ENSG00000055483|ENST00000449938|USP36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7674255371094 2 453.774003 905.533452 0.6954 0.00031555 -0.40074 -0.00018185 0.29465 0.00013371 453.7737603212464 105.84 0.79551 101.75 101.43 102.23 -4.0913 52 22 3 0 0 0 0.54916 1 20417 20417 25.399 2.2509 1 6556800 29617 1272 19840 19848 29144 29144 0.076906791397505 LVSLQQLQQ 9 Unmodified _LVSLQQLQQ_ 0 0 0 ENSG00000223611|ENST00000486479|SUPT20HL2;nc|ENSG00000223731|Q3ZLR7|SUPT20HL1;ENSG00000223731|ENST00000686983|SUPT20HL1 ENSG00000223611|ENST00000486479|SUPT20HL2 ENSG00000223611|ENST00000486479|SUPT20HL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 353.2432556152344 3 352.873113 1055.59751 0.34315 0.00012109 -0.99668 -0.0003517 -0.65353 -0.00023061 352.8731361472718 87.952 0.35097 83.957 83.765 84.116 -3.9953 10 9 2 0 0 0 0.62689 1 16760 16760 0.029283 0 1 494540 29618 7778 19841 19849 29145 29145 0.07193414506036788 LVSTMSKY 8 Unmodified _LVSTMSKY_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650085449219 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 77.523 1 77.523 77.023 78.023 0 0 0 0 0.23584 1 15073 15073 0.62683 0 1 29619 1933 19842 19850 29146 29146 0.00691620414204408 LVSTMSKY 8 Unmodified _LVSTMSKY_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1645812988281 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 65.486 1 62.439 61.939 62.939 -3.047 0 0 0 0.23837 1 12675 12675 0.12286 0 1 29620 1933 19842 19850 29147 29147 0.00691620414204408 LVSTMSKY 8 Unmodified _LVSTMSKY_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650695800781 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 134.66 1 130.02 129.52 130.52 -4.6399 0 0 0 0.21486 1 26557 26557 1.6526 0 1 29621 1933 19842 19850 29148 29148 0.00691620414204408 LVSTMSKY 8 Unmodified _LVSTMSKY_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648864746094 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 84.29 1 80.381 79.881 80.881 -3.9093 0 0 0 0.23584 1 16020 16020 0.62683 0 1 29622 1933 19842 19850 29149 29149 0.00691620414204408 LVSTMSKY 8 Unmodified _LVSTMSKY_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1644592285156 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 84.515 1 80.606 80.106 81.106 -3.9093 0 0 0 0.23837 1 16065 16065 0.12286 0 1 29623 1933 19842 19850 29150 29150 0.00691620414204408 LVSTMSKY 8 Unmodified _LVSTMSKY_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.170166015625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 130.24 1 125.41 124.91 125.91 -4.8355 0 0 0 0.21486 1 25006 25006 1.6526 0 1 29624 1933 19842 19850 29151 29151 0.00691620414204408 LVSTMSKY 8 Unmodified _LVSTMSKY_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 140.38 1 135.39 134.89 135.89 -4.9877 0 0 0 0.2396 1 27018 27018 0 0 1 29625 1933 19842 19850 29152 29152 0.00691620414204408 LVSTMSKY 8 Unmodified _LVSTMSKY_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.164794921875 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 153.69 1 148.42 147.92 148.92 -5.2669 0 0 0 0.2396 1 29795 29795 0 0 1 29626 1933 19842 19850 29153 29153 0.00691620414204408 LVSTMSKY 8 Unmodified _LVSTMSKY_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1645812988281 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 157.37 1 152.09 151.59 152.59 -5.2854 0 0 0 0.21486 1 30538 30538 1.6526 0 1 29627 1933 19842 19850 29154 29154 0.00691620414204408 LVSTMSKY 8 Unmodified _LVSTMSKY_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16473388671875 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 146.51 1 141.51 141.01 142.01 -5 0 0 0 0.2386 1 28353 28353 0.0082765 0 1 29628 1933 19842 19850 29155 29155 0.00691620414204408 LVSTMSKY 8 Unmodified _LVSTMSKY_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 161.72 1 156.53 156.03 157.03 -5.1878 0 0 0 0.2386 1 31388 31388 0.12286 0 1 29629 1933 19842 19850 29156 29156 0.00691620414204408 LVSTSAGG 8 Unmodified _LVSTSAGG_ 0 0 0 REV__ENST00000490581.6_1_X:51805127-51807590:-|nuORF REV__ENST00000490581.6_1_X:51805127-51807590:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 346.1860046386719 2 346.184686 690.354819 NaN NaN NaN NaN NaN NaN NaN 90.01 1 86.232 85.732 86.732 -3.7779 0 0 0 0.23711 1 17224 17224 0.12286 0 1 + 29630 17186 19843 19851 29157 29157 -0.0027441049913932147 LVSVFSAAR 9 Unmodified _LVSVFSAAR_ 0 0 0 REV__TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant REV__TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.14886474609375 3 317.187032 948.539266 NaN NaN NaN NaN NaN NaN NaN 107.09 1 102.68 102.18 103.18 -4.4121 0 0 0 0.23508 1 20544 20544 2.4985 0.84587 1 + 29631 14786 19844 19852 29158 29158 0.06293777651421806 LVSVKEGDWYN 11 Unmodified _LVSVKEGDWYN_ 0 0 0 REV__CFH|p.R830W|1|0.29|ENSG00000000971|chr1:196736898-196736898|C/T|missense_variant REV__CFH|p.R830W|1|0.29|ENSG00000000971|chr1:196736898-196736898|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22772216796875 3 437.218949 1308.63502 NaN NaN NaN NaN NaN NaN NaN 51.403 1 48.521 48.021 49.021 -2.8824 0 0 0 0.22632 1 9766 9766 1.4074 0 1 + 29632 13391 19845 19853 29159 29159 -0.006955390189659738 LVTEPEPVP 9 Unmodified _LVTEPEPVP_ 0 0 0 REV__nc|ENSG00000136381|P48200-2|IREB2 REV__nc|ENSG00000136381|P48200-2|IREB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2569580078125 2 490.768583 979.522613 -1.1216 -0.00055042 -1.2431 -0.00061007 -2.3646 -0.0011605 490.76791329824135 20.303 0.21073 18.668 18.57 18.781 -1.6351 9 5 2 0 0 0 0.84208 1 3119 3119 11.64 2.2929 1 261370 + 29633 16327 19846 19854 29160 29160 0.03203231974805476 LVTFDWRSQ 9 Unmodified _LVTFDWRSQ_ 0 0 0 ENST00000391761.5_1_19:54598488-54598698:-|nuORF;nc|ENSG00000170909|Q8IYS5-6|OSCAR;nc|ENSG00000170909|Q8IYS5-2|OSCAR;ENSG00000170909|ENST00000358375|OSCAR;nc|ENSG00000170909|Q8IYS5-3|OSCAR ENST00000391761.5_1_19:54598488-54598698:-|nuORF ENST00000391761.5_1_19:54598488-54598698:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3352661132812 2 576.29583 1150.57711 NaN NaN NaN NaN NaN NaN NaN 22.736 1 21.282 20.782 21.782 -1.4535 0 0 0 0.23508 1 3637 3637 3.5965 0.31518 1 29634 6111 19847 19855 29161 29161 0.007842438462375867 LVTGASSG 8 Unmodified _LVTGASSG_ 0 0 0 ENSG00000136709|ENST00000322313|WDR33;nc|ENSG00000136709|Q9C0J8-3|WDR33;nc|ENSG00000136709|Q9C0J8-2|WDR33;WDR33|p.P989Lfs*292|1|0.28|ENSG00000136709|chr2:127713927-127713927|C/-|frameshift_variant;WDR33|p.D1065Mfs*216|1|0.47|ENSG00000136709|chr2:127713698-127713698|C/-|frameshift_variant ENSG00000136709|ENST00000322313|WDR33;WDR33|p.P989Lfs*292|1|0.28|ENSG00000136709|chr2:127713927-127713927|C/-|frameshift_variant ENSG00000136709|ENST00000322313|WDR33 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.1852722167969 2 346.184686 690.354819 NaN NaN NaN NaN NaN NaN NaN 71.982 1 68.671 68.171 69.171 -3.3107 0 0 0 0.22834 1 14024 14024 0.12286 0 1 29635 4030;26576 19848 19856 29162 29162 -0.002744104991279528 LVTLHLIV 8 Unmodified _LVTLHLIV_ 0 0 0 REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7511291503906 2 454.302396 906.590239 0.25192 0.00011445 -0.021111 -9.5908E-06 0.23081 0.00010486 454.30229772762294 124.82 0.88347 124.82 124.34 125.22 0 74 24 4 0 0 0 0.3708 1 24603 24603 42.968 8.7807 1 29969000 + 29636 12986 19849 19857 29163 29163 0.13320726696292695 LVTLHLIV 8 Unmodified _LVTLHLIV_ 0 0 0 REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7598571777344 2 454.302396 906.590239 -0.060161 -2.7331E-05 0.29208 0.00013269 0.23192 0.00010536 454.3024492296362 128.67 0.95952 124.04 123.54 124.5 -4.6292 81 26 4 0 0 0 0.3708 1 25411 25411 52.693 0 1 36348000 + 29637 12986 19849 19857 29164 29164 0.13320726696292695 LVTLHLIV 8 Unmodified _LVTLHLIV_ 0 0 0 REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7496032714844 2 454.302396 906.590239 0.12555 5.7039E-05 0.11793 5.3578E-05 0.24349 0.00011062 454.3023603374833 128.88 1.0148 124.14 123.66 124.68 -4.7408 88 28 4 0 0 0 0.3708 1 24790 24790 52.693 12.244 1 30532000 + 29638 12986 19849 19857 29165 29165 0.13320726696292695 LVTNLREAY 9 Unmodified _LVTNLREAY_ 0 0 0 REV__ENST00000587347.1_1_18:77727964-77730448:+|nuORF REV__ENST00000587347.1_1_18:77727964-77730448:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2018737792969 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 91.562 1 91.562 91.062 92.062 0 0 0 0 0.23508 1 17896 17896 7.1017 2.3858 1 + 29639 23273 19850 19858 29166 29166 0.046171279889904326 LVTVCHPLCP 10 Unmodified _LVTVCHPLCP_ 0 0 0 ENST00000482648.5_1_9:135981358-135982559:-|nuORF ENST00000482648.5_1_9:135981358-135982559:-|nuORF ENST00000482648.5_1_9:135981358-135982559:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2789306640625 2 541.28028 1080.54601 0.45924 0.00024858 -0.85192 -0.00046113 -0.39268 -0.00021255 541.2797561974718 31.799 0.59872 29.568 29.409 30.008 -2.2305 20 16 2 0 0 0 0.47611 1 5828 5828 6.6304 1.7334 1 583730 29640 10400 19851 19859 29167 29167 0.008956312161444657 LVVDTKNEF 9 Unmodified _LVVDTKNEF_ 0 0 0 REV__ENSG00000167657|ENST00000545797|DAPK3 REV__ENSG00000167657|ENST00000545797|DAPK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28662109375 2 532.784764 1063.55498 0.67137 0.0003577 0.17443 9.2936E-05 0.84581 0.00045063 532.7849713819849 100.56 0.41316 96.259 96.021 96.434 -4.297 22 11 3 0 0 0 0.62102 1 19270 19270 11.64 0 1 1954400 + 29641 17952 19852 19860 29168 29168 0.025740193777892273 LVVIKLLLKI 10 Unmodified _LVVIKLLLKI_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-3|PHC3 REV__nc|ENSG00000173889|Q8NDX5-3|PHC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.334716796875 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 162.46 1 157.27 156.77 157.77 -5.1878 0 0 0 0.22588 1 31544 31544 0.45834 0.057624 1 + 29642 24178 19853 19861 29169 29169 0.2723152533792472 LVVKELRRLEA 11 Unmodified _LVVKELRRLEA_ 0 0 0 BFAR|p.T447A|1|0.39|ENSG00000103429|chr16:14667813-14667813|A/G|missense_variant BFAR|p.T447A|1|0.39|ENSG00000103429|chr16:14667813-14667813|A/G|missense_variant BFAR|p.T447A|1|0.39|ENSG00000103429|chr16:14667813-14667813|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.2069396972656 4 332.212044 1324.81907 -0.4322 -0.00014358 3.7935 0.0012602 3.3613 0.0011166 332.4642461932811 119.95 0.10277 119.95 119.87 119.97 0 4 2 2 0 0 0 0.96218 1 23636 23636 1.2148 1.0749 1 836430 29643 316 19854 19862 29170 29170 0.16965274202379987 LVVKELRRLEA 11 Unmodified _LVVKELRRLEA_ 0 0 0 BFAR|p.T447A|1|0.39|ENSG00000103429|chr16:14667813-14667813|A/G|missense_variant BFAR|p.T447A|1|0.39|ENSG00000103429|chr16:14667813-14667813|A/G|missense_variant BFAR|p.T447A|1|0.39|ENSG00000103429|chr16:14667813-14667813|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 332.212044 1324.81907 0.36302 0.0001206 1.7912 0.00059504 2.1542 0.00071565 332.46354750383324 124.94 0.34727 120.17 120.06 120.4 -4.7681 0.10771 -0.00022018 NaN 1.2148 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 809460 29644 316 19854 19862 0.16965274202379987 LVVLILVCV 9 Unmodified _LVVLILVCV_ 0 0 0 REV__ENSG00000149654|ENST00000537909|CDH22 REV__ENSG00000149654|ENST00000537909|CDH22 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.21673583984375 3 324.217163 969.629661 NaN NaN NaN NaN NaN NaN NaN 78.115 1 74.652 74.152 75.152 -3.4633 0 0 0 0.19624 1 15254 15254 0.073264 0 1 + 29645 17018 19855 19863 29171 29171 0.14363110655472155 LVVLLLKY 8 Unmodified _LVVLLLKY_ 0 0 0 ENSG00000125266|ENST00000646441|EFNB2 ENSG00000125266|ENST00000646441|EFNB2 ENSG00000125266|ENST00000646441|EFNB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2544250488281 2 480.828246 959.64194 0.066872 3.2154E-05 -0.026641 -1.281E-05 0.040231 1.9344E-05 480.8281954303257 98.379 0.65769 94.246 93.952 94.61 -4.1326 23 18 2 0 0 0 1.0095 1 19329 19329 2.5775 1.7838 1 1122100 29646 3346 19856 19864 29172 29172 0.16050470390166538 LVVMFFFCCA 10 Unmodified _LVVMFFFCCA_ 0 0 0 REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13 REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2684936523438 2 590.273609 1178.53267 NaN NaN NaN NaN NaN NaN NaN 136.4 1 136.4 135.9 136.9 0 0 0 0 2.8426 1 27029 27029 0.043787 0 1 + 29647 13922 19857 19865 29173 29173 -0.04945942887457022 LVVMKHRWRGI 11 Unmodified _LVVMKHRWRGI_ 0 0 0 REV__ENSG00000172578|ENST00000341319|KLHL6 REV__ENSG00000172578|ENST00000341319|KLHL6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2469177246094 3 465.611569 1393.81288 -0.0047102 -2.1931E-06 1.1943 0.00055606 1.1895 0.00055387 465.61219363513317 50.002 0.47507 47.003 46.727 47.202 -2.999 21 13 2 0 0 0 0.88781 1 9183 9183 0.03141 0 1 1217400 + 29648 18295 19858 19866 29174 29174 0.13172477489820267 LVVQQRKNQAY 11 Unmodified _LVVQQRKNQAY_ 0 0 0 REV__ENST00000469957.5_1_13:52342857-52348188:-|nuORF REV__ENST00000469957.5_1_13:52342857-52348188:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.1219787597656 3 449.589487 1345.74663 0.14135 6.3547E-05 -1.2082 -0.00054321 -1.0669 -0.00047967 449.5889533076371 20.208 0.27712 18.811 18.653 18.93 -1.3966 21 7 4 0 0 0 0.96214 1 3392 3392 0.50596 0.50596 1 868950 + 29649 14848 19859 19867 29175 29175 0.08758940128814174 LVWAWRQWRRL 11 Unmodified _LVWAWRQWRRL_ 0 0 0 REV__IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant REV__IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6995849609375 3 523.968633 1568.88407 0.18284 9.5803E-05 -3.8264 -0.0020049 -3.6436 -0.0019091 523.9659712478391 137.24 0.24182 137.24 137.17 137.41 0 9 6 2 0 0 0 0.96165 1 27233 27233 2.4348 0 1 5654100 + 29650 23673 19860 19868 29176 29176 0.12238313518855648 LVWRWDRDRYY 11 Unmodified _LVWRWDRDRYY_ 0 0 0 REV__ENSG00000243811|ENST00000216099|APOBEC3D REV__ENSG00000243811|ENST00000216099|APOBEC3D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7836303710938 3 543.275791 1626.80554 0.3384 0.00018385 -1.0929 -0.00059375 -0.7545 -0.0004099 543.2747642943787 142.63 0.21039 142.63 142.48 142.69 0 7 5 2 0 0 0 0.96224 1 28447 28447 0.094841 0.011491 1 3843200 + 29651 19804 19861 19869 29177 29177 0.017214164231063478 LVWRWDRDRYY 11 Unmodified _LVWRWDRDRYY_ 0 0 0 REV__ENSG00000243811|ENST00000216099|APOBEC3D REV__ENSG00000243811|ENST00000216099|APOBEC3D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7822875976562 3 543.275791 1626.80554 0.40158 0.00021817 1.2394 0.00067336 1.641 0.00089153 543.2770365251082 89.67 0.1077 85.626 85.551 85.659 -4.0443 4 2 2 0 0 0 0.96224 1 17073 17073 0.50596 0.41111 1 487760 + 29652 19804 19861 19869 29178 29178 0.017214164231063478 LVYAGAGV 8 Unmodified _LVYAGAGV_ 0 0 0 REV__ENST00000561720.5_1_16:58529427-58541082:+|nuORF REV__ENST00000561720.5_1_16:58529427-58541082:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2122497558594 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 88.978 1 85.228 84.728 85.728 -3.7501 0 0 0 0.23294 1 17035 17035 0.30703 0 1 + 29653 14860 19862 19870 29179 29179 0.027670567772474897 LVYCLCIAG 9 Unmodified _LVYCLCIAG_ 0 0 0 REV__ENSG00000139874|ENST00000267377|SSTR1 REV__ENSG00000139874|ENST00000267377|SSTR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74267578125 2 477.742999 953.471446 -0.24598 -0.00011752 -0.53185 -0.00025409 -0.77783 -0.0003716 477.74267623057597 105.06 0.88022 100.85 100.4 101.28 -4.2183 61 24 3 0 0 0 0.57821 1 20727 20727 14.582 1.0738 1 7359000 + 29654 16548 19863 19871 29180 29180 -0.007151315952455661 LVYCLCIAG 9 Unmodified _LVYCLCIAG_ 0 0 0 REV__ENSG00000139874|ENST00000267377|SSTR1 REV__ENSG00000139874|ENST00000267377|SSTR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.742999 953.471446 0.29125 0.00013914 -1.0798 -0.00051587 -0.78855 -0.00037672 477.74243197299415 100.73 0.81287 100.73 100.38 101.19 0 -0.062995 -0.0002661 NaN 14.582 56 22 3 NaN NaN NaN NaN 0 NaN NaN 0 6418200 + 29655 16548 19863 19871 -0.007151315952455661 LVYCLCIAG 9 Unmodified _LVYCLCIAG_ 0 0 0 REV__ENSG00000139874|ENST00000267377|SSTR1 REV__ENSG00000139874|ENST00000267377|SSTR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.742999 953.471446 -0.24598 -0.00011752 -0.53185 -0.00025409 -0.77783 -0.0003716 477.74267623057597 105.06 0.88022 100.85 100.4 101.28 -4.2183 0.056523 0.00025746 NaN 14.582 61 24 3 NaN NaN NaN NaN 0 NaN NaN 0 7359000 + 29656 16548 19863 19871 -0.007151315952455661 LVYCLCIAG 9 Unmodified _LVYCLCIAG_ 0 0 0 REV__ENSG00000139874|ENST00000267377|SSTR1 REV__ENSG00000139874|ENST00000267377|SSTR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.742999 953.471446 0.095824 4.5779E-05 -0.84219 -0.00040235 -0.74636 -0.00035657 477.74253487367463 105.17 0.69657 100.8 100.49 101.19 -4.3764 0.0064721 -3.9063E-05 NaN 14.582 51 19 3 NaN NaN NaN NaN 0 NaN NaN 0 5495100 + 29657 16548 19863 19871 -0.007151315952455661 LVYDGREK 8 Unmodified _LVYDGREK_ 0 0 0 REV__nc|ENSG00000136068|O75369-7|FLNB REV__nc|ENSG00000136068|O75369-7|FLNB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2648620605469 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 73.516 1 69.922 69.422 70.422 -3.594 0 0 0 0.22674 1 13957 13957 14.838 0 1 + 29658 16311 19864 19872 29181 29181 0.02332883409144415 LVYLDVGK 8 Unmodified _LVYLDVGK_ 0 0 0 REV__ENSG00000172315|ENST00000372114|TP53RK REV__ENSG00000172315|ENST00000372114|TP53RK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7694396972656 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 128.78 1 128.78 128.28 129.28 0 0 0 0 0.21486 1 25436 25436 5.2307 0 1 + 29659 18281 19865 19873 29182 29182 0.06567857045627079 LVYRKIFR 8 Unmodified _LVYRKIFR_ 0 0 0 REV__TRPC7|p.L787F|2|0.24|ENSG00000069018|chr5:136216260-136216260|G/A|missense_variant REV__TRPC7|p.L787F|2|0.24|ENSG00000069018|chr5:136216260-136216260|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.779541015625 2 547.845294 1093.67603 0.46815 0.00025647 -0.21911 -0.00012004 0.24904 0.00013644 548.3465559634678 154.63 0.18161 149.38 149.25 149.43 -5.2526 5 4 2 0 0 0 1.0231 1 29993 29993 1.8442 0 1 1030300 + 29660 25486 19866 19874 29183 29183 0.13294311601794107 LVYVLIHPLL 10 Unmodified _LVYVLIHPLL_ 0 0 0 REV__nc|ENSG00000175054|Q13535-2|ATR REV__nc|ENSG00000175054|Q13535-2|ATR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2657470703125 2 590.378635 1178.74272 NaN NaN NaN NaN NaN NaN NaN 158.26 1 152.98 152.48 153.48 -5.2748 0 0 0 2.8426 1 30715 30715 0.0013812 0 1 + 29661 18448 19867 19875 29184 29184 0.1604950237306184 LWASKSIRY 9 Unmodified _LWASKSIRY_ 0 0 0 REV__ENSG00000122884|ENST00000394890|P4HA1 REV__ENSG00000122884|ENST00000394890|P4HA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2125549316406 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 51.17 1 51.17 50.67 51.67 0 0 0 0 0.19677 1 9700 9700 1.2148 0 1 + 29662 15707 19868 19876 29185 29185 0.06217424605551969 LWAVRKHLRRL 11 Unmodified _LWAVRKHLRRL_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 724.4777221679688 2 724.459679 1446.90481 NaN NaN NaN NaN NaN NaN NaN 162.91 1 157.72 157.22 158.22 -5.1878 0 0 0 0.22632 1 31660 31660 0.0059557 0 1 29663 7022 19869 19877 29186 29186 0.1992290389853224 LWEYFPVDVIL 11 Unmodified _LWEYFPVDVIL_ 0 0 0 REV__nc|ENSG00000136270|Q969Z0-2|TBRG4 REV__nc|ENSG00000136270|Q969Z0-2|TBRG4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2510070800781 3 465.25159 1392.73294 NaN NaN NaN NaN NaN NaN NaN 69.161 1 69.161 68.661 69.661 0 0 0 0 0.22632 1 13385 13385 3.0723 0 1 + 29664 16322 19870 19878 29187 29187 0.05228269577014544 LWFFWDQRRES 11 Unmodified _LWFFWDQRRES_ 0 0 0 ENST00000343348.10_1_5:115814322-115814382:-|nuORF ENST00000343348.10_1_5:115814322-115814382:-|nuORF ENST00000343348.10_1_5:115814322-115814382:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3817138671875 2 785.3835 1568.75245 NaN NaN NaN NaN NaN NaN NaN 84.368 1 80.656 80.156 81.156 -3.7117 0 0 0 0.22632 1 16114 16114 0.00056442 0 1 29665 8876 19871 19879 29188 29188 -0.009179613595733827 LWGPWLPC 8 Unmodified _LWGPWLPC_ 0 0 0 KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant;KRT6B|p.G65Rfs*80|1|0.06|ENSG00000185479|chr12:52451861-52451886|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.4972229003906 3 324.498441 970.473494 NaN NaN NaN NaN NaN NaN NaN 26.517 1 24.735 24.235 25.235 -1.7821 0 0 0 0.23837 1 4684 4684 0.063987 0 1 29666 12014 19872 19880 29189 29189 -0.012923347951300457 LWGWDREVTV 10 Unmodified _LWGWDREVTV_ 0 0 0 ENST00000473978.5_1_3:195997408-196014446:-|nuORF ENST00000473978.5_1_3:195997408-196014446:-|nuORF ENST00000473978.5_1_3:195997408-196014446:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76806640625 2 630.822212 1259.62987 NaN NaN NaN NaN NaN NaN NaN 147.82 1 143.11 142.61 143.61 -4.7095 0 0 0 0.22588 1 29344 29344 11.64 0.84079 1 29667 10249 19873 19881 29190 29190 0.010442019090305621 LWIALRHKHIA 11 Unmodified _LWIALRHKHIA_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7544860839844 3 453.278696 1356.81426 -0.73469 -0.00033302 0.66132 0.00029976 -0.073374 -3.3259E-05 453.27900939785167 15.108 0.17398 13.994 13.887 14.061 -1.1142 6 4 2 0 0 0 0.66298 1 2293 2293 0.094841 0.094841 1 964890 29668 4043 19874 19882 29191 29191 0.15012434850291356 LWIGRRWR 8 Unmodified _LWIGRRWR_ 0 0 0 IQCJ-SCHIP1|p.Q158Rfs*141|1|0.22|ENSG00000283154|chr3:159764847-159764847|C/-|frameshift_variant IQCJ-SCHIP1|p.Q158Rfs*141|1|0.22|ENSG00000283154|chr3:159764847-159764847|C/-|frameshift_variant IQCJ-SCHIP1|p.Q158Rfs*141|1|0.22|ENSG00000283154|chr3:159764847-159764847|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.15338134765625 3 381.561315 1141.66212 -0.18423 -7.0297E-05 -0.87869 -0.00033527 -1.0629 -0.00040557 381.56097227254213 109.4 0.77477 104.95 104.71 105.49 -4.4518 27 21 2 0 0 0 0.89328 1 21018 21018 2.643 2.6397 1 886190 29669 11952 19875 19883 29192 29192 0.09695078893355458 LWIIQSGY 8 Unmodified _LWIIQSGY_ 0 0 0 ENST00000557071.1_3_14:102380750-102391606:+|nuORF ENST00000557071.1_3_14:102380750-102391606:+|nuORF ENST00000557071.1_3_14:102380750-102391606:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25830078125 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 98.367 1 98.367 97.867 98.867 0 0 0 0 0.22699 1 19279 19279 6.1918 5.5105 1 29670 11250 19876 19884 29193 29193 0.027349729028628644 LWKFIRDFLRW 11 Unmodified _LWKFIRDFLRW_ 0 0 0 ENSG00000128242|ENST00000406361|GAL3ST1 ENSG00000128242|ENST00000406361|GAL3ST1 ENSG00000128242|ENST00000406361|GAL3ST1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 527.3017578125 3 527.301389 1578.88234 NaN NaN NaN NaN NaN NaN NaN 178.6 1 178.6 178.1 179.1 0 0 0 0 0.22632 1 36997 36997 0 0 1 29671 3513 19877 19885 29194 29194 0.11605259710245264 LWKMKWEQMWR 11 Unmodified _LWKMKWEQMWR_ 0 0 0 LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2745971679688 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 45.778 1 42.911 42.411 43.411 -2.8666 0 0 0 0.22632 1 8313 8313 0.094841 0.094841 1 29672 12069 19878 19886 29195 29195 0.020173768270979053 LWKMKWEQMWR 11 Unmodified _LWKMKWEQMWR_ 0 0 0 LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.274658203125 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 158.39 1 153.12 152.62 153.62 -5.2712 0 0 0 0.22632 1 30733 30733 1.4551 0.94916 1 29673 12069 19878 19886 29196 29196 0.020173768270979053 LWKNWLCRLRN 11 Unmodified _LWKNWLCRLRN_ 0 0 0 nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant;ABCA13|p.F155Lfs*11|1|0.3|ENSG00000179869|chr7:48221300-48221300|T/-|frameshift_variant;ABCA13|p.T156Yfs*6|2|0.31|ENSG00000179869|chr7:48221299-48221300|-/T|frameshift_variant;ABCA13|p.K1949Rfs*10|1|0.04|ENSG00000179869|chr7:48275509-48275510|-/TCGGG|frameshift_variant;ABCA13|p.N1764Tfs*18|1|0.33|ENSG00000179869|chr7:48274953-48274953|A/-|frameshift_variant;ABCA13|p.S1533Lfs*16|1|0.1|ENSG00000179869|chr7:48274262-48274263|-/CT|frameshift_variant;ABCA13|p.E1535Lfs*6|1|0.06|ENSG00000179869|chr7:48274267-48274268|-/TTTAGGTTTCTTCTCT|frameshift_variant;ABCA13|p.P1447Tfs*22|1|0.49|ENSG00000179869|chr7:48273997-48273998|-/A|frameshift_variant;ABCA13|p.L1248Tfs*2|1|0.16|ENSG00000179869|chr7:48273400-48273401|-/A|frameshift_variant;nc|ENSG00000179869|Q86UQ4-2|ABCA13;ABCA13|p.H2188Ifs*3|1|0.11|ENSG00000179869|chr7:48276226-48276226|C/-|frameshift_variant nc|ENSG00000179869|Q86UQ4-4|ABCA13 nc|ENSG00000179869|Q86UQ4-4|ABCA13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 501.3152770996094 3 501.278479 1500.81361 NaN NaN NaN NaN NaN NaN NaN 136.76 1 131.84 131.34 132.34 -4.9216 0 0 0 0.22632 1 26287 26287 3.0723 2.9003 1 29674 9 19879 19887 29197 29197 0.08323272138909488 LWLALMVVH 9 Unmodified _LWLALMVVH_ 0 0 0 GPR20|p.A58V|2|0.29|ENSG00000204882|chr8:141357751-141357751|G/A|missense_variant GPR20|p.A58V|2|0.29|ENSG00000204882|chr8:141357751-141357751|G/A|missense_variant GPR20|p.A58V|2|0.29|ENSG00000204882|chr8:141357751-141357751|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2720947265625 2 541.31498 1080.61541 NaN NaN NaN NaN NaN NaN NaN 13.604 1 12.594 12.094 13.094 -1.0098 0 0 0 0.23508 1 1983 1983 2.3027 0 1 29675 11860 19880 19888 29198 29198 0.0783245822722165 LWLHFFYYFQI 11 Unmodified _LWLHFFYYFQI_ 0 0 0 ENST00000416739.5_1_12:3931314-3938131:-|nuORF ENST00000416739.5_1_12:3931314-3938131:-|nuORF ENST00000416739.5_1_12:3931314-3938131:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 788.9132080078125 2 788.903005 1575.79146 NaN NaN NaN NaN NaN NaN NaN 168.61 1 163.74 163.24 164.24 -4.873 0 0 0 0.22632 1 33248 33248 0.50596 0 1 29676 9625 19881 19889 29199 29199 0.026593709421376843 LWLQHAKRA 9 Unmodified _LWLQHAKRA_ 0 0 0 REV__nc|ENSG00000132305|Q16891-3|IMMT REV__nc|ENSG00000132305|Q16891-3|IMMT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2115478515625 3 374.889209 1121.6458 -0.8594 -0.00032218 -0.26122 -9.7928E-05 -1.1206 -0.00042011 374.8893246928921 81.586 0.18311 77.898 77.831 78.015 -3.6879 6 4 2 0 0 0 0.59831 1 15551 15551 0.0033805 0 1 597560 + 29677 16104 19882 19890 29200 29200 0.08983952936591777 LWLRFKYYSFF 11 Unmodified _LWLRFKYYSFF_ 0 0 0 ENST00000541326.5_1_11:63979141-63987695:+|nuORF;FERMT3|p.R510Pfs*105|1|0.28|ENSG00000149781|chr11:64220634-64220635|-/C|frameshift_variant;ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3 ENST00000541326.5_1_11:63979141-63987695:+|nuORF ENST00000541326.5_1_11:63979141-63987695:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3827514648438 2 785.41628 1568.81801 NaN NaN NaN NaN NaN NaN NaN 154.44 1 154.44 153.94 154.94 0 0 0 0 0.23698 1 30955 30955 1.3295 0 1 29678 4810 19883 19891 29201 29201 0.0563505983345749 LWLTASQP 8 Unmodified _LWLTASQP_ 0 0 0 ENSG00000176454|ENST00000314891|LPCAT4 ENSG00000176454|ENST00000314891|LPCAT4 ENSG00000176454|ENST00000314891|LPCAT4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24005126953125 2 458.25036 914.486168 NaN NaN NaN NaN NaN NaN NaN 66.61 1 63.114 62.614 63.614 -3.4965 0 0 0 0.21292 1 12486 12486 14.838 2.3067 1 29679 6469 19884 19892 29202 29202 0.025503998687554486 LWLVLCCWG 9 Unmodified _LWLVLCCWG_ 0 0 0 REV__ENSG00000135617|ENST00000258083|PRADC1 REV__ENSG00000135617|ENST00000258083|PRADC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 364.8868408203125 3 364.850486 1091.52963 NaN NaN NaN NaN NaN NaN NaN 7.8844 1 6.8696 6.3696 7.3696 -1.0148 0 0 0 0.23508 1 693 693 0.26902 0 1 + 29680 16279 19885 19893 29203 29203 -0.012474499499830927 LWQKRPRWSRR 11 Unmodified _LWQKRPRWSRR_ 0 0 0 REV__ENST00000397497.8_2_8:27288464-27288860:+|nuORF REV__ENST00000397497.8_2_8:27288464-27288860:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.693115234375 3 523.639287 1567.89603 NaN NaN NaN NaN NaN NaN NaN 63.023 1 59.607 59.107 60.107 -3.4158 0 0 0 0.22632 1 11771 11771 0.50596 0.41111 1 + 29681 21307 19886 19894 29204 29204 0.13479930262064954 LWQSSEVI 8 Unmodified _LWQSSEVI_ 0 0 0 NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant;ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1;NWD1|p.L337Wfs*14|2|0.28|ENSG00000188039|chr19:16749646-16749646|C/-|frameshift_variant NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2533264160156 2 481.2531 960.491647 0.59517 0.00028643 -0.17498 -8.4212E-05 0.42019 0.00020222 481.252948308135 109.18 0.70125 105 104.7 105.4 -4.1826 30 19 2 0 0 0 0.69887 1 21073 21073 14.582 2.0501 1 1173300 29682 7146 19887 19895 29205 29205 0.00982078660570096 LWQWPRWL 8 Unmodified _LWQWPRWL_ 0 0 0 REV__ENST00000344111.3_1_7:1007829-1008150:-|nuORF REV__ENST00000344111.3_1_7:1007829-1008150:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 395.20538330078125 3 395.550304 1183.62908 -0.039072 -1.5455E-05 2.0454 0.00080905 2.0063 0.0007936 395.54997278882513 102.51 1.0585 98.492 98.079 99.137 -4.0212 73 29 4 0 0 0 0.89225 1 19760 19760 6.2058 1.3088 1 1623500 + 29683 20739 19888 19896 29206 29206 0.044614520506456756 LWRFMREYTA 10 Unmodified _LWRFMREYTA_ 0 0 0 REV__ENSG00000100345|ENST00000216181|MYH9 REV__ENSG00000100345|ENST00000216181|MYH9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2246398925781 3 458.232535 1371.67578 NaN NaN NaN NaN NaN NaN NaN 33.489 1 31.273 30.773 31.773 -2.2158 0 0 0 2.8426 1 5838 5838 0.043787 0 1 + 29684 14695 19889 19897 29207 29207 0.0048052381964680535 LWRKQRLWKWW 11 Unmodified _LWRKQRLWKWW_ 0 0 0 chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.831298828125 2 843.480611 1684.94667 NaN NaN NaN NaN NaN NaN NaN 165.54 1 165.54 165.04 166.04 0 0 0 0 0.23698 1 33607 33607 0 0 1 29685 534 19890 19898 29208 29208 0.13159459587063793 LWRQFWQKMLE 11 Unmodified _LWRQFWQKMLE_ 0 0 0 ENSG00000162733|ENST00000367921|DDR2 ENSG00000162733|ENST00000367921|DDR2 ENSG00000162733|ENST00000367921|DDR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2755737304688 3 522.274623 1563.80204 NaN NaN NaN NaN NaN NaN NaN 172.56 1 167.66 167.16 168.16 -4.8977 0 0 0 0.22632 1 34230 34230 0.50596 0 1 29686 5361 19891 19899 29209 29209 0.04269030324894629 LWRRLARAWS 10 Unmodified _LWRRLARAWS_ 0 0 0 ENST00000531211.1_1_8:70772071-70772629:-|nuORF ENST00000531211.1_1_8:70772071-70772629:-|nuORF ENST00000531211.1_1_8:70772071-70772629:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 438.8760070800781 3 438.922912 1313.74691 NaN NaN NaN NaN NaN NaN NaN 14.625 1 13.51 13.01 14.01 -1.1142 0 0 0 2.8426 1 2204 2204 0.13989 0.04505 1 29687 10967 19892 19900 29210 29210 0.10258404639307628 LWRRWERRRR 10 Unmodified _LWRRWERRRR_ 0 0 0 ENST00000444165.1_1_1:148853888-148854101:-|nuORF ENST00000444165.1_1_1:148853888-148854101:-|nuORF ENST00000444165.1_1_1:148853888-148854101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4032592773438 2 785.458533 1568.90251 NaN NaN NaN NaN NaN NaN NaN 91.272 1 87.178 86.678 87.678 -4.0946 0 0 0 2.8426 1 17393 17393 0.043787 0.043787 1 29688 9922 19893 19901 29211 29211 0.14081868213406779 LWRRWERRRR 10 Unmodified _LWRRWERRRR_ 0 0 0 ENST00000444165.1_1_1:148853888-148854101:-|nuORF ENST00000444165.1_1_1:148853888-148854101:-|nuORF ENST00000444165.1_1_1:148853888-148854101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3922729492188 2 785.458533 1568.90251 NaN NaN NaN NaN NaN NaN NaN 162.15 1 156.96 156.46 157.46 -5.1878 0 0 0 0.22588 1 31479 31479 1.1933 0.12188 1 29689 9922 19893 19901 29212 29212 0.14081868213406779 LWRRWERRRR 10 Unmodified _LWRRWERRRR_ 0 0 0 ENST00000444165.1_1_1:148853888-148854101:-|nuORF ENST00000444165.1_1_1:148853888-148854101:-|nuORF ENST00000444165.1_1_1:148853888-148854101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3912353515625 2 785.458533 1568.90251 NaN NaN NaN NaN NaN NaN NaN 170.46 1 165.59 165.09 166.09 -4.873 0 0 0 2.8426 1 33734 33734 0.69767 0.55777 1 29690 9922 19893 19901 29213 29213 0.14081868213406779 LWRRWERRRRA 11 Unmodified _LWRRWERRRRA_ 0 0 0 ENST00000444165.1_1_1:148853888-148854101:-|nuORF ENST00000444165.1_1_1:148853888-148854101:-|nuORF ENST00000444165.1_1_1:148853888-148854101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7683715820312 3 547.653819 1639.93963 NaN NaN NaN NaN NaN NaN NaN 163.03 1 158.25 157.75 158.75 -4.7898 0 0 0 0.23698 1 32471 32471 0.094841 0.011491 1 29691 9922 19894 19902 29214 29214 0.1452553975916544 LWSLRSNREV 10 Unmodified _LWSLRSNREV_ 0 0 0 REV__nc|ENSG00000204290|Q9UIR0-8|BTNL2 REV__nc|ENSG00000204290|Q9UIR0-8|BTNL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7540893554688 2 630.346386 1258.67822 NaN NaN NaN NaN NaN NaN NaN 54.336 1 51.452 50.952 51.952 -2.8837 0 0 0 0.22588 1 10368 10368 7.1017 0.89594 1 + 29692 24238 19895 19903 29215 29215 0.05922695548906631 LWVAAPCN 8 Unmodified _LWVAAPCN_ 0 0 0 REV__PLK3|p.L455Wfs*90|1|0.24|ENSG00000173846|chr1:44804354-44804354|C/-|frameshift_variant REV__PLK3|p.L455Wfs*90|1|0.24|ENSG00000173846|chr1:44804354-44804354|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21661376953125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 111.68 1 107.45 106.95 107.95 -4.2289 0 0 0 0.21486 1 21500 21500 5.7604 2.8712 1 + 29693 24488 19896 19904 29216 29216 -0.019854982088986617 LWVPLPPSA 9 Unmodified _LWVPLPPSA_ 0 0 0 ENSG00000254206|ENST00000698511|NPIPB11 ENSG00000254206|ENST00000698511|NPIPB11 ENSG00000254206|ENST00000698511|NPIPB11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27410888671875 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 30.688 1 28.613 28.113 29.113 -2.0743 0 0 0 0.23508 1 5263 5263 4.3292 0 1 29694 7923 19897 19905 29217 29217 0.06371849799563734 LWWRRRWTRSQ 11 Unmodified _LWWRRRWTRSQ_ 0 0 0 ENST00000554052.2_2_14:35515721-35519263:+|nuORF;ENST00000280987.8_1_14:35515634-35522487:+|nuORF ENST00000554052.2_2_14:35515721-35519263:+|nuORF ENST00000554052.2_2_14:35515721-35519263:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7910766601562 3 544.299042 1629.8753 0.38742 0.00021087 1.1341 0.00061729 1.5215 0.00082816 544.3009881404593 144.68 0.17111 139.74 139.66 139.83 -4.9445 6 4 2 0 0 0 0.89134 1 27941 27941 0.094841 0.087559 1 4443100 29695 8439 19898 19906 29218 29218 0.08555339882400403 LWWYYDMPHYR 11 Unmodified _LWWYYDMPHYR_ 0 0 0 REV__ENSG00000161267|ENST00000392379|BDH1 REV__ENSG00000161267|ENST00000392379|BDH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3679809570312 2 815.369004 1628.72345 NaN NaN NaN NaN NaN NaN NaN 163.52 1 163.52 163.02 164.02 0 0 0 0 0.23698 1 32966 32966 0.26902 0 1 + 29696 17452 19899 19907 29219 29219 -0.06575821980186447 LWWYYDMPHYR 11 Unmodified _LWWYYDMPHYR_ 0 0 0 REV__ENSG00000161267|ENST00000392379|BDH1 REV__ENSG00000161267|ENST00000392379|BDH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3658447265625 2 815.369004 1628.72345 NaN NaN NaN NaN NaN NaN NaN 143.48 1 138.58 138.08 139.08 -4.8982 0 0 0 0.23698 1 27692 27692 0.30703 0.03801 1 + 29697 17452 19899 19907 29220 29220 -0.06575821980186447 LWWYYDMPHYR 11 Unmodified _LWWYYDMPHYR_ 0 0 0 REV__ENSG00000161267|ENST00000392379|BDH1 REV__ENSG00000161267|ENST00000392379|BDH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3720703125 2 815.369004 1628.72345 NaN NaN NaN NaN NaN NaN NaN 158.88 1 153.61 153.11 154.11 -5.2712 0 0 0 0.22632 1 30828 30828 0.00056442 0 1 + 29698 17452 19899 19907 29221 29221 -0.06575821980186447 LWYFWRCHVFI 11 Unmodified _LWYFWRCHVFI_ 0 0 0 TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3927612304688 2 785.394825 1568.7751 NaN NaN NaN NaN NaN NaN NaN 165.08 1 160.09 159.59 160.59 -4.9811 0 0 0 0.22632 1 32238 32238 0.026206 0.025642 1 29699 26526 19900 19908 29222 29222 0.013459665043683344 LWYSFDHNY 9 Unmodified _LWYSFDHNY_ 0 0 0 nc|ENSG00000065923|Q96T83|SLC9A7;ENSG00000065923|ENST00000616978|SLC9A7 nc|ENSG00000065923|Q96T83|SLC9A7 nc|ENSG00000065923|Q96T83|SLC9A7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7669067382812 2 622.772188 1243.52982 NaN NaN NaN NaN NaN NaN NaN 134.13 1 129.49 128.99 129.99 -4.6399 0 0 0 0.19669 1 26446 26446 1.6919 0 1 29700 1363 19901 19909 29223 29223 -0.08220035424756134 LYAEFLPEL 9 Unmodified _LYAEFLPEL_ 0 0 0 REV__KRT79|p.E398Gfs*31|1|0.35|ENSG00000185640|chr12:52823190-52823191|-/C|frameshift_variant REV__KRT79|p.E398Gfs*31|1|0.35|ENSG00000185640|chr12:52823190-52823191|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7916259765625 2 547.792058 1093.56956 0.2615 0.00014325 -0.47604 -0.00026077 -0.21454 -0.00011752 547.7917859795388 99.132 0.75658 95.176 94.799 95.555 -3.9564 39 21 3 0 0 0 0.59384 1 19105 19105 13.508 0 1 4687800 + + 29701 13550 19902 19910 29224 29224 0.026520915259425237 LYAPGLGKYL 10 Unmodified _LYAPGLGKYL_ 0 0 0 REV__ENSG00000162461|ENST00000294454|SLC25A34 REV__ENSG00000162461|ENST00000294454|SLC25A34 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7667846679688 2 547.815867 1093.61718 NaN NaN NaN NaN NaN NaN NaN 142.55 1 142.55 142.05 143.05 0 0 0 0 0.22526 1 28421 28421 21.747 6.9084 1 + 29702 17500 19903 19911 29225 29225 0.07411790516812289 LYATETLIY 9 Unmodified _LYATETLIY_ 0 0 0 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1;sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7899780273438 2 543.789515 1085.56448 NaN NaN NaN NaN NaN NaN NaN 114.26 1 109.71 109.21 110.21 -4.555 0 0 0 0.19697 1 21939 21939 0.40827 0 1 29703 25728 19904 19912 29226 29226 0.02511787663343057 LYCSLHDPV 9 Unmodified _LYCSLHDPV_ 0 0 0 ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2;ENST00000466870.1_1_3:113784185-113787033:+|nuORF ENSG00000151576|ENST00000281273|QTRT2 ENSG00000151576|ENST00000281273|QTRT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6798706054688 2 523.75241 1045.49027 NaN NaN NaN NaN NaN NaN NaN 104.84 1 100.49 99.989 100.99 -4.346 0 0 0 0.23508 1 20089 20089 12.532 1.4171 1 29704 4874 19905 19913 29227 29227 -0.030658786998628784 LYDALDGGNCY 11 Unmodified _LYDALDGGNCY_ 0 0 0 REV__ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant REV__ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.30126953125 2 602.252971 1202.49139 1.0417 0.00062738 -0.4836 -0.00029125 0.55813 0.00033613 602.2527538260459 100.45 0.72118 96.286 96.011 96.732 -4.1594 28 20 2 0 0 0 0.78079 1 19824 19824 6.2058 1.8765 1 2045600 + 29705 18543 19906 19914 29228 29228 -0.10175709121585896 LYDALDGGNCY 11 Unmodified _LYDALDGGNCY_ 0 0 0 REV__ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant REV__ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2920532226562 2 602.252971 1202.49139 NaN NaN NaN NaN NaN NaN NaN 78.297 1 74.53 74.03 75.03 -3.7664 0 0 0 0.22085 1 14846 14846 13.906 5.7505 1 + 29706 18543 19906 19914 29229 29229 -0.10175709121585896 LYDLRADRE 9 Unmodified _LYDLRADRE_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF nc|ENSG00000069966|O14775-3|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF nc|ENSG00000069966|O14775-3|GNB5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3370971679688 2 575.796195 1149.57784 0.27946 0.00016091 2.724 0.0015685 3.0034 0.0017294 575.7977560255123 114.46 0.495 114.46 114.19 114.68 0 16 13 2 0 0 0 0.54076 1 22496 22496 17.113 2.2746 1 1904800 29707 1421;11275 19907 19915 29230 29230 0.009030384952893655 LYDLRADRE 9 Unmodified _LYDLRADRE_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF nc|ENSG00000069966|O14775-3|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF nc|ENSG00000069966|O14775-3|GNB5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3270874023438 2 575.796195 1149.57784 0.41064 0.00023644 2.2637 0.0013034 2.6743 0.0015399 575.7979096542576 119.15 0.79895 114.74 114.42 115.22 -4.4088 27 22 2 0 0 0 0.54076 1 22936 22936 17.113 0.1706 1 2345100 29708 1421;11275 19907 19915 29231 29231 0.009030384952893655 LYDNLPPP 8 Unmodified _LYDNLPPP_ 0 0 0 ENSG00000196526|ENST00000420658|AFAP1;ENST00000513842.1_1_4:7765494-7800689:-|nuORF ENSG00000196526|ENST00000420658|AFAP1 ENSG00000196526|ENST00000420658|AFAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17034912109375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 104.91 1 104.91 104.41 105.41 0 0 0 0 0.21486 1 20618 20618 1.6526 0 1 29709 7278 19908 19916 29232 29232 0.003546936318457483 LYDNYAEEY 9 Unmodified _LYDNYAEEY_ 0 0 0 REV__ENSG00000134198|ENST00000369516|TSPAN2 REV__ENSG00000134198|ENST00000369516|TSPAN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2493896484375 2 590.245669 1178.47678 NaN NaN NaN NaN NaN NaN NaN 105.82 1 101.45 100.95 101.95 -4.3764 0 0 0 0.22251 1 20289 20289 16.942 5.302 1 + 29710 16197 19909 19917 29233 29233 -0.10531457998104088 LYDNYAEEY 9 Unmodified _LYDNYAEEY_ 0 0 0 REV__ENSG00000134198|ENST00000369516|TSPAN2 REV__ENSG00000134198|ENST00000369516|TSPAN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.248291015625 2 590.245669 1178.47678 NaN NaN NaN NaN NaN NaN NaN 106.1 1 101.72 101.22 102.22 -4.3764 0 0 0 0.21065 1 20346 20346 20.454 6.5476 1 + 29711 16197 19909 19917 29234 29234 -0.10531457998104088 LYDRQFRP 8 Unmodified _LYDRQFRP_ 0 0 0 ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7911376953125 2 547.790715 1093.56688 NaN NaN NaN NaN NaN NaN NaN 123.68 1 119.11 118.61 119.61 -4.5757 0 0 0 0.20462 1 24381 24381 21.747 0.20967 1 29712 3888 19910 19918 29235 29235 0.02383680911657393 LYDRRKDE 8 Unmodified _LYDRRKDE_ 0 0 0 REV__ENST00000493688.5_1_20:56813265-56820980:-|nuORF REV__ENST00000493688.5_1_20:56813265-56820980:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7832641601562 2 547.783087 1093.55162 0.051569 2.8249E-05 -1.1732 -0.00064266 -1.1216 -0.00061441 547.7824283740742 49.368 0.41219 46.369 46.067 46.479 -2.999 13 11 2 0 0 0 8448 1 9034 9034 6.2058 5.1406 1 606550 + 29713 22354 19911 19919 29236 29236 0.008587693238041538 LYDRRKDE 8 Unmodified _LYDRRKDE_ 0 0 0 REV__ENST00000493688.5_1_20:56813265-56820980:-|nuORF REV__ENST00000493688.5_1_20:56813265-56820980:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7830810546875 2 547.783087 1093.55162 0.25788 0.00014126 2.1113 0.0011565 2.3692 0.0012978 547.783438519127 88.182 0.44977 84.432 84.189 84.639 -3.7501 18 12 2 0 0 0 0.70613 1 16892 16892 13.508 0.97634 1 972700 + 29714 22354 19911 19919 29237 29237 0.008587693238041538 LYDVAWIY 8 Unmodified _LYDVAWIY_ 0 0 0 REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.277587890625 2 521.765843 1041.51713 0.18311 9.554E-05 -1.0842 -0.0005657 -0.90109 -0.00047016 521.7653603057773 91.276 0.93082 87.468 87.032 87.962 -3.8083 92 26 5 0 0 0 0.69887 1 17568 17568 14.582 1.0738 1 39156000 + 29715 20733 19912 19920 29238 29238 -0.0019644681699446664 LYDYDTMCQ 9 Unmodified _LYDYDTMCQ_ 0 0 0 REV__sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1 REV__sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3380737304688 2 576.222825 1150.4311 NaN NaN NaN NaN NaN NaN NaN 147.51 1 147.51 147.01 148.01 0 0 0 0 0.23508 1 29504 29504 4.3292 0 1 + 29716 24693 19913 19921 29239 29239 -0.13810142776333123 LYDYDTMCQ 9 Unmodified _LYDYDTMCQ_ 0 0 0 REV__sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1 REV__sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3236083984375 2 576.222825 1150.4311 NaN NaN NaN NaN NaN NaN NaN 115 1 110.44 109.94 110.94 -4.555 0 0 0 0.23508 1 22078 22078 7.9102 0.62092 1 + 29717 24693 19913 19921 29240 29240 -0.13810142776333123 LYEKGQVLD 9 Unmodified _LYEKGQVLD_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2702026367188 2 532.784764 1063.55498 -0.24079 -0.00012829 0.078426 4.1784E-05 -0.16236 -8.6503E-05 532.7849379059159 68.054 1.5248 68.054 67.653 69.178 0 161 42 6 0 0 0 0.19311 1 13357 13357 37.974 1.847 1 758080000 + 29718 17221 19914 19922 29241 29241 0.025740193778119647 LYELKDNSI 9 Unmodified _LYELKDNSI_ 0 0 0 REV__ENST00000453595.1_1_X:36980271-36981156:-|nuORF REV__ENST00000453595.1_1_X:36980271-36981156:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7852783203125 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 119.19 1 114.69 114.19 115.19 -4.502 0 0 0 0.23508 1 23504 23504 11.64 0.81637 1 + 29719 21832 19915 19923 29242 29242 0.022500020322468117 LYEQRKEL 8 Unmodified _LYEQRKEL_ 0 0 0 REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1 REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20184326171875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 104.17 1 100.12 99.619 100.62 -4.0543 0 0 0 0.21486 1 20031 20031 7.2892 0 1 + 29720 25391 19916 19924 29243 29243 0.0461712798901317 LYESFDWGYEE 11 Unmodified _LYESFDWGYEE_ 0 0 0 nc|ENSG00000204356|P18615-4|NELFE nc|ENSG00000204356|P18615-4|NELFE nc|ENSG00000204356|P18615-4|NELFE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 479.8563232421875 3 479.866352 1436.57723 NaN NaN NaN NaN NaN NaN NaN 10.882 1 9.788 9.288 10.288 -1.0936 0 0 0 0.23698 1 1262 1262 0 0 1 29721 12559 19917 19925 29244 29244 -0.12359845735090857 LYESGARTSYD 11 Unmodified _LYESGARTSYD_ 0 0 0 ENSG00000204099|ENST00000407683|NEU4;nc|ENSG00000204099|Q8WWR8-2|NEU4;nc|ENSG00000204099|Q8WWR8-3|NEU4 ENSG00000204099|ENST00000407683|NEU4 ENSG00000204099|ENST00000407683|NEU4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.779296875 2 631.288399 1260.56225 0.73485 0.0004639 -2.5023 -0.0015797 -1.7675 -0.0011158 631.2881405859126 112.48 0.83418 108.03 107.52 108.36 -4.4538 63 23 4 0 0 0 0.91597 1 22139 22139 15.248 1.3424 1 3300700 29722 7559 19918 19926 29245 29245 -0.05761292812417196 LYETDYTQF 9 Unmodified _LYETDYTQF_ 0 0 0 REV__ZMYM6|p.F804Lfs*6|1|0.38|ENSG00000163867|chr1:34988670-34988670|A/-|frameshift_variant REV__ZMYM6|p.F804Lfs*6|1|0.38|ENSG00000163867|chr1:34988670-34988670|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2636108398438 2 590.263862 1178.51317 0.48762 0.00028782 -0.60406 -0.00035655 -0.11644 -6.8731E-05 590.2638666800007 100.97 0.93948 96.813 96.391 97.331 -4.1594 82 26 4 0 0 0 0.54076 1 19784 19784 17.113 2.5312 1 13592000 + 29723 17623 19919 19927 29246 29246 -0.06894581101369113 LYETFSYY 8 Unmodified _LYETFSYY_ 0 0 0 REV__ENST00000351773.7_1_10:38407933-38408194:+|nuORF REV__ENST00000351773.7_1_10:38407933-38408194:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.794677734375 2 543.244941 1084.47533 0.2659 0.00014445 0.023308 1.2662E-05 0.28921 0.00015711 543.2447423510552 128.87 0.52612 124.24 123.87 124.4 -4.6292 21 14 2 0 0 0 0.94155 1 25390 25390 15.768 0 1 2288000 + 29724 20770 19920 19928 29247 29247 -0.06353047296170189 LYFWKDREFHE 11 Unmodified _LYFWKDREFHE_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3763427734375 2 785.377883 1568.74121 NaN NaN NaN NaN NaN NaN NaN 178.84 1 174.05 173.55 174.55 -4.7898 0 0 0 0.23698 1 36590 36590 0.30703 0.30703 1 29725 5759 19921 19929 29248 29248 -0.020407834537081726 LYFYVIGS 8 Unmodified _LYFYVIGS_ 0 0 0 ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1 ENST00000551412.5_1_12:54718935-54741629:+|nuORF ENST00000551412.5_1_12:54718935-54741629:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.231689453125 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 121.39 1 116.85 116.35 117.35 -4.5476 0 0 0 0.21486 1 23929 23929 11.114 0.29054 1 29726 2623 19922 19930 29249 29249 0.013841681542885453 LYGAVLCCS 9 Unmodified _LYGAVLCCS_ 0 0 0 ENST00000344111.3_1_7:1008668-1008785:-|nuORF ENST00000344111.3_1_7:1008668-1008785:-|nuORF ENST00000344111.3_1_7:1008668-1008785:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 930.4796142578125 1 928.426686 927.41941 0.52596 0.00048831 -1.0265 -0.00095301 -0.50052 -0.00046469 928.4257058714081 34.481 0.67762 34.481 34.178 34.856 0 46 19 3 0 0 0 0.74257 1 6280 6280 4.3292 1.44 1 3348700 29727 8884 19923 19931 29250 29250 -0.047202950090081686 LYGAVLCCS 9 Unmodified _LYGAVLCCS_ 0 0 0 ENST00000344111.3_1_7:1008668-1008785:-|nuORF ENST00000344111.3_1_7:1008668-1008785:-|nuORF ENST00000344111.3_1_7:1008668-1008785:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 928.426686 927.41941 0.33886 0.0003146 -0.7834 -0.00072733 -0.44455 -0.00041273 928.425921210221 36.932 0.75108 34.584 34.277 35.028 -2.3479 0.029429 5.2771E-05 NaN 4.3292 46 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3235800 29728 8884 19923 19931 -0.047202950090081686 LYGAVLCCS 9 Unmodified _LYGAVLCCS_ 0 0 0 ENST00000344111.3_1_7:1008668-1008785:-|nuORF ENST00000344111.3_1_7:1008668-1008785:-|nuORF ENST00000344111.3_1_7:1008668-1008785:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 928.426686 927.41941 0.38857 0.00036076 -0.67675 -0.00062831 -0.28818 -0.00026755 928.425989296915 36.935 0.91371 34.598 34.207 35.12 -2.3375 0.043569 0.00015179 NaN 4.3292 57 25 3 NaN NaN NaN NaN 0 NaN NaN 0 2817800 29729 8884 19923 19931 -0.047202950090081686 LYGCATMD 8 Unmodified _LYGCATMD_ 0 0 0 nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1 nc|ENSG00000131620|Q5XXA6-3|ANO1 nc|ENSG00000131620|Q5XXA6-3|ANO1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2276611328125 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 77.424 1 73.961 73.461 74.461 -3.4633 0 0 0 0.23366 1 15116 15116 0.25148 0 1 29730 3684 19924 19932 29251 29251 -0.10045147314087899 LYGFLHVI 8 Unmodified _LYGFLHVI_ 0 0 0 ENST00000573895.1_1_17:959077-961279:-|nuORF;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR ENST00000573895.1_1_17:959077-961279:-|nuORF ENST00000573895.1_1_17:959077-961279:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2425231933594 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 176.25 1 171.46 170.96 171.96 -4.7898 0 0 0 0.23711 1 36039 36039 0.12286 0 1 29731 5219 19925 19933 29252 29252 0.061438671451242044 LYGFLHVI 8 Unmodified _LYGFLHVI_ 0 0 0 ENST00000573895.1_1_17:959077-961279:-|nuORF;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR ENST00000573895.1_1_17:959077-961279:-|nuORF ENST00000573895.1_1_17:959077-961279:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2425231933594 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 176.27 1 171.48 170.98 171.98 -4.7898 0 0 0 0.21486 1 36043 36043 2.8892 0 1 29732 5219 19925 19933 29253 29253 0.061438671451242044 LYGFLHVI 8 Unmodified _LYGFLHVI_ 0 0 0 ENST00000573895.1_1_17:959077-961279:-|nuORF;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR ENST00000573895.1_1_17:959077-961279:-|nuORF ENST00000573895.1_1_17:959077-961279:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2438049316406 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 176.5 1 171.71 171.21 172.21 -4.7898 0 0 0 0.23711 1 36092 36092 0.12286 0 1 29733 5219 19925 19933 29254 29254 0.061438671451242044 LYGFLHVI 8 Unmodified _LYGFLHVI_ 0 0 0 ENST00000573895.1_1_17:959077-961279:-|nuORF;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR ENST00000573895.1_1_17:959077-961279:-|nuORF ENST00000573895.1_1_17:959077-961279:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2421875 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 176.74 1 171.95 171.45 172.45 -4.7898 0 0 0 0.23711 1 36144 36144 0.12286 0 1 29734 5219 19925 19933 29255 29255 0.061438671451242044 LYGFLHVI 8 Unmodified _LYGFLHVI_ 0 0 0 ENST00000573895.1_1_17:959077-961279:-|nuORF;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR ENST00000573895.1_1_17:959077-961279:-|nuORF ENST00000573895.1_1_17:959077-961279:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2424011230469 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 176.85 1 171.95 171.45 172.45 -4.9008 0 0 0 0.21486 1 35263 35263 2.8892 0 1 29735 5219 19925 19933 29256 29256 0.061438671451242044 LYGHMLSAFRD 11 Unmodified _LYGHMLSAFRD_ 0 0 0 ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335|PPFIA4;nc|ENSG00000143847|O75335-2|PPFIA4;nc|ENSG00000143847|O75335-1|PPFIA4;ENST00000486360.1_1_1:203045416-203045515:+|nuORF ENSG00000143847|ENST00000295706|PPFIA4 ENSG00000143847|ENST00000295706|PPFIA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2312927246094 3 437.216774 1308.62849 NaN NaN NaN NaN NaN NaN NaN 126.24 1 121.56 121.06 122.06 -4.6828 0 0 0 0.22632 1 24287 24287 0.026206 0.024825 1 29736 4524 19926 19934 29257 29257 -0.01347755451388366 LYGISGDKVE 10 Unmodified _LYGISGDKVE_ 0 0 0 ARHGEF18-MAPKAP1|2|fusion;ARHGEF18-MAPKAP1|1|fusion ARHGEF18-MAPKAP1|2|fusion ARHGEF18-MAPKAP1|2|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.79541015625 2 540.782222 1079.54989 -0.089376 -4.8333E-05 0.28184 0.00015241 0.19246 0.00010408 540.7819941248412 105.65 1.1587 101.38 100.81 101.97 -4.2638 139 32 7 0 0 0 0.6817 1 20830 20830 13.042 0 1 87535000 29737 211 19927 19935 29258 29258 0.013297155152031337 LYGSADES 8 Unmodified _LYGSADES_ 0 0 0 REV__F2R|p.F104Cfs*54|1|0.35|ENSG00000181104|chr5:76732535-76732536|TT/-|frameshift_variant REV__F2R|p.F104Cfs*54|1|0.35|ENSG00000181104|chr5:76732535-76732536|TT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 421.335205078125 2 421.18234 840.350128 NaN NaN NaN NaN NaN NaN NaN 120.93 1 120.93 120.43 121.43 0 0 0 0 0.21486 1 23839 23839 5.2307 2.3415 1 + 29738 18718 19928 19936 29259 29259 -0.07643339432570428 LYHFFGLF 8 Unmodified _LYHFFGLF_ 0 0 0 REV__OR13F1|p.P21L|1|0.16|ENSG00000186881|chr9:104504324-104504324|C/T|missense_variant REV__OR13F1|p.P21L|1|0.16|ENSG00000186881|chr9:104504324-104504324|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2715454101562 2 522.271096 1042.52764 NaN NaN NaN NaN NaN NaN NaN 27.141 1 25.359 24.859 25.859 -1.7821 0 0 0 0.23899 1 4814 4814 1.3295 0 1 + 29739 24402 19929 19937 29260 29260 0.008075806280885445 LYHHVHPEEV 10 Unmodified _LYHHVHPEEV_ 0 0 0 NLRP1|p.R1240H|1|0.22|ENSG00000091592|chr17:5521588-5521588|C/T|missense_variant NLRP1|p.R1240H|1|0.22|ENSG00000091592|chr17:5521588-5521588|C/T|missense_variant NLRP1|p.R1240H|1|0.22|ENSG00000091592|chr17:5521588-5521588|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.2158203125 3 420.543767 1258.60947 -0.23375 -9.8303E-05 0.48797 0.00020521 0.25422 0.00010691 420.54381053506904 68.967 0.77395 65.788 65.309 66.082 -3.1796 48 21 3 0 0 0 0.51405 1 13327 13327 3.8763 0 1 10284000 29740 12693 19930 19938 29261 29261 -0.009489687507539202 LYHHVHPEEV 10 Unmodified _LYHHVHPEEV_ 0 0 0 NLRP1|p.R1240H|1|0.22|ENSG00000091592|chr17:5521588-5521588|C/T|missense_variant NLRP1|p.R1240H|1|0.22|ENSG00000091592|chr17:5521588-5521588|C/T|missense_variant NLRP1|p.R1240H|1|0.22|ENSG00000091592|chr17:5521588-5521588|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 420.543767 1258.60947 -0.24801 -0.0001043 0.45764 0.00019246 0.20964 8.8162E-05 420.5438678531572 65.526 0.58604 65.526 65.173 65.759 0 -0.16215 0.00026536 NaN 3.8763 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 7852500 29741 12693 19930 19938 -0.009489687507539202 LYHHVHPEEV 10 Unmodified _LYHHVHPEEV_ 0 0 0 NLRP1|p.R1240H|1|0.22|ENSG00000091592|chr17:5521588-5521588|C/T|missense_variant NLRP1|p.R1240H|1|0.22|ENSG00000091592|chr17:5521588-5521588|C/T|missense_variant NLRP1|p.R1240H|1|0.22|ENSG00000091592|chr17:5521588-5521588|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 420.543767 1258.60947 0.32769 0.00013781 -0.046332 -1.9485E-05 0.28136 0.00011832 420.5436118299349 69.286 0.61346 65.75 65.433 66.046 -3.5362 0.06189 -0.00037047 NaN 3.8763 40 16 4 NaN NaN NaN NaN 0 NaN NaN 0 8406400 29742 12693 19930 19938 -0.009489687507539202 LYHHVHPEEV 10 Unmodified _LYHHVHPEEV_ 0 0 0 NLRP1|p.R1240H|1|0.22|ENSG00000091592|chr17:5521588-5521588|C/T|missense_variant NLRP1|p.R1240H|1|0.22|ENSG00000091592|chr17:5521588-5521588|C/T|missense_variant NLRP1|p.R1240H|1|0.22|ENSG00000091592|chr17:5521588-5521588|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 420.543767 1258.60947 0.019524 8.2107E-06 0.15033 6.3219E-05 0.16985 7.143E-05 420.878053560792 69.079 0.62883 65.688 65.352 65.981 -3.3903 0.0005152 -0.00012236 NaN 3.8763 43 17 3 NaN NaN NaN NaN 0 NaN NaN 0 9003500 29743 12693 19930 19938 -0.009489687507539202 LYHLRLEAEVE 11 Unmodified _LYHLRLEAEVE_ 0 0 0 nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4 nc|ENSG00000124067|Q9UP95-3|SLC12A4 nc|ENSG00000124067|Q9UP95-3|SLC12A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23101806640625 3 457.913748 1370.71942 -1.5951 -0.00073042 -0.34759 -0.00015917 -1.9427 -0.00088959 457.91354458452577 15.572 0.41496 14.218 14.029 14.443 -1.3534 35 11 4 0 0 0 0.82353 1 2124 2124 0.50596 0 1 4287800 29744 3289 19931 19939 29262 29262 0.04888411797742265 LYHQSKGP 8 Unmodified _LYHQSKGP_ 0 0 0 ENSG00000111671|ENST00000524270|SPSB2;nc|ENSG00000111671|Q99619-2|SPSB2 ENSG00000111671|ENST00000524270|SPSB2 ENSG00000111671|ENST00000524270|SPSB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2455749511719 2 465.245609 928.476666 0.1637 7.616E-05 -0.16827 -7.8286E-05 -0.0045702 -2.1263E-06 465.2453919619796 29.703 0.34232 29.703 29.541 29.884 0 13 9 2 0 0 0 0.58432 2 5302 5302;5351 23.148 7.3012 1 671880 29745 2634 19932 19940 29263;29264 29263 0.009566315832444161 LYHQSKGP 8 Unmodified _LYHQSKGP_ 0 0 0 ENSG00000111671|ENST00000524270|SPSB2;nc|ENSG00000111671|Q99619-2|SPSB2 ENSG00000111671|ENST00000524270|SPSB2 ENSG00000111671|ENST00000524270|SPSB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2391357421875 2 465.245609 928.476666 0.47915 0.00022292 -0.43522 -0.00020248 0.043934 2.044E-05 465.2454585694922 31.862 0.3144 29.714 29.514 29.829 -2.1483 13 8 2 0 0 0 0.58432 1 5477 5477 23.148 7.3012 1 603700 29746 2634 19932 19940 29265 29265 0.009566315832444161 LYHYYRHNRLY 11 Unmodified _LYHYYRHNRLY_ 0 0 0 REV__ENST00000481979.1_1_6:83863232-83863364:+|nuORF REV__ENST00000481979.1_1_6:83863232-83863364:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.272216796875 3 533.27227 1596.79498 NaN NaN NaN NaN NaN NaN NaN 75.416 1 72.001 71.501 72.501 -3.4151 0 0 0 0.22632 1 14709 14709 4.6037 3.1486 1 + 29747 22183 19933 19941 29266 29266 0.02045433768694238 LYHYYRHNRLY 11 Unmodified _LYHYYRHNRLY_ 0 0 0 REV__ENST00000481979.1_1_6:83863232-83863364:+|nuORF REV__ENST00000481979.1_1_6:83863232-83863364:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2749633789062 3 533.27227 1596.79498 NaN NaN NaN NaN NaN NaN NaN 106.4 1 102.31 101.81 102.81 -4.0913 0 0 0 0.22632 1 20462 20462 0.58532 0.31993 1 + 29748 22183 19933 19941 29267 29267 0.02045433768694238 LYHYYRHNRLY 11 Unmodified _LYHYYRHNRLY_ 0 0 0 REV__ENST00000481979.1_1_6:83863232-83863364:+|nuORF REV__ENST00000481979.1_1_6:83863232-83863364:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2708129882812 3 533.27227 1596.79498 NaN NaN NaN NaN NaN NaN NaN 155.18 1 149.93 149.43 150.43 -5.2526 0 0 0 0.22632 1 30092 30092 0.172 0 1 + 29749 22183 19933 19941 29268 29268 0.02045433768694238 LYIFVHEKFL 10 Unmodified _LYIFVHEKFL_ 0 0 0 REV__nc|ENSG00000110066|Q4FZB7-4|KMT5B REV__nc|ENSG00000110066|Q4FZB7-4|KMT5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 654.873779296875 2 654.871174 1307.72779 NaN NaN NaN NaN NaN NaN NaN 174.79 1 174.79 174.29 175.29 0 0 0 0 2.8426 1 36194 36194 6.6304 5.5652 1 + 29750 15189 19934 19942 29269 29269 0.08624010505013757 LYILLFSWP 9 Unmodified _LYILLFSWP_ 0 0 0 REV__PLEKHG5|p.G645W|1|0.39|ENSG00000171680|chr1:6470271-6470271|C/A|missense_variant REV__PLEKHG5|p.G645W|1|0.39|ENSG00000171680|chr1:6470271-6470271|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3241577148438 2 576.328611 1150.64267 NaN NaN NaN NaN NaN NaN NaN 119.83 1 119.83 119.33 120.33 0 0 0 0 0.23508 1 23614 23614 8.5933 2.3875 1 + 29751 24486 19935 19943 29270 29270 0.07337265039200247 LYILLFSWP 9 Unmodified _LYILLFSWP_ 0 0 0 REV__PLEKHG5|p.G645W|1|0.39|ENSG00000171680|chr1:6470271-6470271|C/A|missense_variant REV__PLEKHG5|p.G645W|1|0.39|ENSG00000171680|chr1:6470271-6470271|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3192138671875 2 576.328611 1150.64267 NaN NaN NaN NaN NaN NaN NaN 130.44 1 125.61 125.11 126.11 -4.8355 0 0 0 0.22251 1 25046 25046 16.942 3.0362 1 + 29752 24486 19935 19943 29271 29271 0.07337265039200247 LYIPTCELI 9 Unmodified _LYIPTCELI_ 0 0 0 REV__ENST00000382584.8_1_3:180327767-180335194:+|nuORF REV__ENST00000382584.8_1_3:180327767-180335194:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2678833007812 2 532.788461 1063.56237 0.39245 0.00020909 2.1902 0.0011669 2.5826 0.001376 532.7893195708583 121.31 0.18207 116.78 116.68 116.86 -4.5305 5 4 2 0 0 0 0.8204 1 23351 23351 8.5933 0.68312 1 386400 + 29753 21181 19936 19944 29272 29272 0.03313035653877705 LYKCIIQY 8 Unmodified _LYKCIIQY_ 0 0 0 REV__nc|ENSG00000116906|O15228-2|GNPAT REV__nc|ENSG00000116906|O15228-2|GNPAT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.28173828125 2 522.283346 1042.55214 NaN NaN NaN NaN NaN NaN NaN 44.574 1 41.808 41.308 42.308 -2.7661 0 0 0 0.21486 1 8073 8073 9.3474 0.75416 1 + 29754 15507 19937 19945 29273 29273 0.03256472719317571 LYKDKREI 8 Unmodified _LYKDKREI_ 0 0 0 ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 ENSG00000139926|ENST00000344768|FRMD6 ENSG00000139926|ENST00000344768|FRMD6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2730712890625 2 532.808574 1063.60259 -0.013917 -7.4153E-06 -0.12746 -6.791E-05 -0.14137 -7.5325E-05 532.8085023417236 50.782 0.48999 47.731 47.398 47.888 -3.0517 23 13 2 0 0 0 0.86749 1 9353 9353 28.487 6.7402 1 1152900 29755 4271 19938 19946 29274 29274 0.07333718368658992 LYKDQKEVE 9 Unmodified _LYKDQKEVE_ 0 0 0 REV__ENSG00000165312|ENST00000376495|OTUD1 REV__ENSG00000165312|ENST00000376495|OTUD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3325805664062 2 576.300778 1150.587 0.072808 4.1959E-05 -0.13924 -8.0243E-05 -0.06643 -3.8283E-05 576.3006142082329 112.11 0.80363 107.59 107.2 108.01 -4.5259 59 22 3 0 0 0 0.42844 1 21475 21475 24.021 3.606 1 18764000 + 29756 17757 19939 19947 29275 29275 0.01773387060939058 LYKFFGLKH 9 Unmodified _LYKFFGLKH_ 0 0 0 REV__ENST00000485105.1_1_3:186724072-186724216:+|nuORF REV__ENST00000485105.1_1_3:186724072-186724216:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3156127929688 2 576.831852 1151.64915 0.40576 0.00023406 2.8379 0.001637 3.2437 0.0018711 577.3366760945224 155.08 0.14346 149.83 149.72 149.87 -5.2527 5 3 2 0 0 0 0.87511 1 30058 30058 3.9444 0 1 783250 + 29757 22216 19940 19948 29276 29276 0.07939202990633021 LYKGKKERPRS 11 Unmodified _LYKGKKERPRS_ 0 0 0 ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF;ENST00000491662.1_1_8:98877671-98877710:+|nuORF ENSG00000186468|ENST00000296674|RPS23 ENSG00000186468|ENST00000296674|RPS23 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 454.4609375 3 454.605249 1360.79392 -0.75932 -0.00034519 -0.57309 -0.00026053 -1.3324 -0.00060572 454.6052153524768 12.07 0.14172 11.06 10.997 11.139 -1.0098 5 3 2 0 0 0 0.47027 1 1644 1644 13.535 12.127 1 464610 29758 7059 19941 19949 29277 29277 0.12795219399777125 LYKKIIKKLL 10 Unmodified _LYKKIIKKLL_ 0 0 0 ENSG00000163737|ENST00000296029|PF4 ENSG00000163737|ENST00000296029|PF4 ENSG00000163737|ENST00000296029|PF4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7568969726562 2 630.444309 1258.87407 NaN NaN NaN NaN NaN NaN NaN 174.98 1 170.19 169.69 170.69 -4.7898 0 0 0 0.22588 1 35763 35763 0.45834 0.10771 1 29759 5458 19942 19950 29278 29278 0.25498312740955953 LYKNIEDKD 9 Unmodified _LYKNIEDKD_ 0 0 0 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2190246582031 3 379.864394 1136.57135 -0.34772 -0.00013209 0.42823 0.00016267 0.080507 3.0582E-05 379.8645108047339 42.794 0.57251 40.075 39.768 40.34 -2.7191 65 15 6 0 0 0 0.67174 1 7979 7979 8.1555 1.4324 1 50731000 29760 26050 19943 19951 29279 29279 0.008531005438953798 LYKNIEDKD 9 Unmodified _LYKNIEDKD_ 0 0 0 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 379.864394 1136.57135 0.015736 5.9774E-06 0.14119 5.3635E-05 0.15693 5.9612E-05 379.86435661835156 40.134 0.63512 40.134 39.789 40.424 0 0.04401 -0.0002326 NaN 8.1555 72 17 7 NaN NaN NaN NaN 0 NaN NaN 0 37510000 29761 26050 19943 19951 0.008531005438953798 LYKNIEDKD 9 Unmodified _LYKNIEDKD_ 0 0 0 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 379.864394 1136.57135 -0.053918 -2.0481E-05 0.11574 4.3965E-05 0.061822 2.3484E-05 379.86440271788985 42.703 0.6244 40.053 39.811 40.435 -2.651 -0.037128 -0.00026161 NaN 8.1555 66 17 6 NaN NaN NaN NaN 0 NaN NaN 0 57936000 29762 26050 19943 19951 0.008531005438953798 LYKNIEDKD 9 Unmodified _LYKNIEDKD_ 0 0 0 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 379.864394 1136.57135 -0.68426 -0.00025993 0.73342 0.0002786 0.049163 1.8675E-05 379.86463361360387 42.703 0.66041 40.097 39.788 40.448 -2.606 0.0077 0.0004423 NaN 8.1555 79 18 6 NaN NaN NaN NaN 0 NaN NaN 0 47956000 29763 26050 19943 19951 0.008531005438953798 LYKPIIALL 9 Unmodified _LYKPIIALL_ 0 0 0 REV__ENSG00000124571|ENST00000265351|XPO5 REV__ENSG00000124571|ENST00000265351|XPO5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2698974609375 2 522.346803 1042.67905 NaN NaN NaN NaN NaN NaN NaN 155.9 1 151.12 150.62 151.62 -4.7791 0 0 0 0.19624 1 30990 30990 0.0033805 0 1 + 29764 15786 19944 19952 29280 29280 0.15942141935943255 LYKPRRRY 8 Unmodified _LYKPRRRY_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3269653320312 2 576.343449 1150.67235 NaN NaN NaN NaN NaN NaN NaN 113.02 1 108.57 108.07 109.07 -4.4539 0 0 0 0.23711 1 22269 22269 0.12286 0.049601 1 29765 3947 19945 19953 29281 29281 0.1030364182795438 LYKPRRRY 8 Unmodified _LYKPRRRY_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3324584960938 2 576.343449 1150.67235 NaN NaN NaN NaN NaN NaN NaN 132.58 1 127.78 127.28 128.28 -4.799 0 0 0 0.23294 1 25519 25519 0.12286 0.1096 1 29766 3947 19945 19953 29282 29282 0.1030364182795438 LYKRKHQRQPM 11 Unmodified _LYKRKHQRQPM_ 0 0 0 REV__ENST00000307808.10_1_4:88052973-88053445:+|nuORF REV__ENST00000307808.10_1_4:88052973-88053445:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 495.6151123046875 3 495.61375 1483.81942 NaN NaN NaN NaN NaN NaN NaN 14.782 1 13.609 13.109 14.109 -1.173 0 0 0 0.22632 1 2025 2025 0.00056442 0 1 + 29767 20454 19946 19954 29283 29283 0.09686370650570097 LYKRPQRY 8 Unmodified _LYKRPQRY_ 0 0 0 REV__WDR59|p.Q401Cfs*32|1|0.19|ENSG00000103091|chr16:74915893-74915894|-/CA|frameshift_variant REV__WDR59|p.Q401Cfs*32|1|0.19|ENSG00000103091|chr16:74915893-74915894|-/CA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21612548828125 3 375.217214 1122.62981 NaN NaN NaN NaN NaN NaN NaN 114.35 1 109.8 109.3 110.3 -4.555 0 0 0 0.21486 1 21957 21957 1.8442 0.19162 1 + 29768 14864 19947 19955 29284 29284 0.07340246699709496 LYKYNEDKQ 9 Unmodified _LYKYNEDKQ_ 0 0 0 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2803955078125 2 600.798403 1199.58225 0.082888 4.9799E-05 0.45953 0.00027609 0.54242 0.00032589 600.7985672144075 94.945 0.58862 91.064 90.742 91.331 -3.881 40 16 3 0 0 0 0.6231 1 18233 18233 0.0033805 0.0019993 1 3193200 29769 26118 19948 19956 29285 29285 -0.009554970818271613 LYKYNEDKQ 9 Unmodified _LYKYNEDKQ_ 0 0 0 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 600.798403 1199.58225 0.21684 0.00013027 -0.010465 -6.2873E-06 0.20637 0.00012399 600.7983499696743 90.903 0.67308 90.903 90.58 91.253 0 -0.12347 6.0956E-05 NaN 0.0033805 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3281300 29770 26118 19948 19956 -0.009554970818271613 LYKYNEDKQ 9 Unmodified _LYKYNEDKQ_ 0 0 0 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 600.798403 1199.58225 1.0009 0.00060136 -0.58672 -0.0003525 0.41422 0.00024886 600.7980387733768 95.148 0.56042 91.099 90.778 91.338 -4.0496 0.072018 -0.00063147 NaN 0.0033805 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4491100 29771 26118 19948 19956 -0.009554970818271613 LYKYNEDKQ 9 Unmodified _LYKYNEDKQ_ 0 0 0 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 600.798403 1199.58225 0.51021 0.00030653 0.11192 6.7242E-05 0.62213 0.00037377 600.798337911153 95.232 0.45473 91.04 90.755 91.21 -4.1911 0.0138 0.00020801 NaN 0.0033805 34 12 4 NaN NaN NaN NaN 0 NaN NaN 0 3858900 29772 26118 19948 19956 -0.009554970818271613 LYKYNEDKQ 9 Unmodified _LYKYNEDKQ_ 0 0 0 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 600.798403 1199.58225 0.082888 4.9799E-05 0.45953 0.00027609 0.54242 0.00032589 600.7985672144075 94.945 0.58862 91.064 90.742 91.331 -3.881 0.037652 0.0006257 NaN 0.0033805 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3193200 29773 26118 19948 19956 -0.009554970818271613 LYKYRRILKNF 11 Unmodified _LYKYRRILKNF_ 0 0 0 REV__BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;REV__nc|ENSG00000136261|Q9Y6E2-2|BZW2 REV__nc|ENSG00000136261|Q9Y6E2-2|BZW2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 505.7177734375 3 505.304911 1512.8929 NaN NaN NaN NaN NaN NaN NaN 82.142 1 78.268 77.768 78.768 -3.8736 0 0 0 0.22632 1 15603 15603 0.50596 0.36606 1 + 29774 13223;16321 19949 19957 29286 29286 0.1569724236469483 LYLFLFSY 8 Unmodified _LYLFLFSY_ 0 0 0 REV__nc|ENSG00000167130|Q86YN1-2|DOLPP1 REV__nc|ENSG00000167130|Q86YN1-2|DOLPP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2734985351562 2 533.286411 1064.55827 NaN NaN NaN NaN NaN NaN NaN 158.25 1 152.98 152.48 153.48 -5.2712 0 0 0 0.21486 1 30705 30705 5.7604 0 1 + 29775 17905 19950 19958 29287 29287 0.028573142224786352 LYLKKLLKL 9 Unmodified _LYLKKLLKL_ 0 0 0 REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 377.92218017578125 3 377.933644 1130.7791 NaN NaN NaN NaN NaN NaN NaN 10.144 1 9.0778 8.5778 9.5778 -1.0664 0 0 0 0.23508 1 1080 1080 0 0 1 + 29776 23306 19951 19959 29288 29288 0.21894379269724595 LYLLKTQLLR 10 Unmodified _LYLLKTQLLR_ 0 0 0 ENST00000239878.8_1_13:38935738-38935825:+|nuORF ENST00000239878.8_1_13:38935738-38935825:+|nuORF ENST00000239878.8_1_13:38935738-38935825:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7615966796875 2 630.905548 1259.79654 NaN NaN NaN NaN NaN NaN NaN 161.65 1 156.86 156.36 157.36 -4.7898 0 0 0 2.8426 1 32152 32152 0.043787 0 1 29777 8179 19952 19960 29289 29289 0.17703674804738512 LYLLVLSVALR 11 Unmodified _LYLLVLSVALR_ 0 0 0 REV__CYP3A4|p.L14R|1|0.19|ENSG00000160868|chr7:99784041-99784041|A/C|missense_variant REV__CYP3A4|p.L14R|1|0.19|ENSG00000160868|chr7:99784041-99784041|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7694702148438 2 630.407924 1258.80129 0.4015 0.00025311 0.23882 0.00015055 0.64032 0.00040366 630.408082380283 90.351 0.62922 86.574 86.259 86.888 -3.7779 43 17 3 0 0 0 0.66146 1 17248 17248 0.026206 0 1 4751200 + 29778 13628 19953 19961 29290 29290 0.1822455894750874 LYLPLEPSY 9 Unmodified _LYLPLEPSY_ 0 0 0 NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant;nc|ENSG00000072736|Q12968-5|NFATC3;nc|ENSG00000072736|Q12968-6|NFATC3;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-3|NFATC3;nc|ENSG00000072736|Q12968-2|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;ENSG00000072736|ENST00000346183|NFATC3;ENST00000569766.5_1_16:68118971-68260371:+|nuORF;NFATC3|p.G218Afs*38|1|0.32|ENSG00000072736|chr16:68122532-68122532|G/-|frameshift_variant NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.789794921875 2 547.792058 1093.56956 0.17788 9.744E-05 -0.32923 -0.00018035 -0.15135 -8.2908E-05 547.7920538564452 95.448 0.79821 95.448 95.142 95.94 0 35 22 3 0 0 0 0.52414 1 18755 18755 18.135 1.1927 1 2803300 29779 1472 19954 19962 29291 29291 0.02652091525965261 LYLRAIKLY 9 Unmodified _LYLRAIKLY_ 0 0 0 REV__nc|ENSG00000138663|Q9BT78-2|COPS4 REV__nc|ENSG00000138663|Q9BT78-2|COPS4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.319091796875 2 576.860609 1151.70667 0.28481 0.0001643 -0.93912 -0.00054174 -0.6543 -0.00037744 576.858004721188 111.78 0.17495 111.78 111.66 111.83 0 6 4 2 0 0 0 0.87788 1 21995 21995 5.2307 0 1 1399100 + 29780 16475 19955 19963 29292 29292 0.13688045196158782 LYLYIYMYRHY 11 Unmodified _LYLYIYMYRHY_ 0 0 0 ENST00000515408.5_1_5:112353398-112353584:+|nuORF ENST00000515408.5_1_5:112353398-112353584:+|nuORF ENST00000515408.5_1_5:112353398-112353584:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2684326171875 3 533.267245 1596.77991 NaN NaN NaN NaN NaN NaN NaN 144.33 1 144.33 143.83 144.83 0 0 0 0 0.22632 1 28833 28833 0.172 0 1 29781 10786 19956 19964 29293 29293 0.005388058564903986 LYMVLILAFY 10 Unmodified _LYMVLILAFY_ 0 0 0 REV__OR13C3|p.F246Sfs*13|1|0.31|ENSG00000204246|chr9:104536077-104536077|A/-|frameshift_variant REV__OR13C3|p.F246Sfs*13|1|0.31|ENSG00000204246|chr9:104536077-104536077|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7572021484375 2 623.351228 1244.6879 0.3854 0.00024024 0.6566 0.00040929 1.042 0.00064953 623.3494013742855 113.91 0.1749 113.91 113.77 113.94 0 5 4 2 0 0 0 0.91046 1 22406 22406 7.9102 4.3137 1 1634800 + 29782 19519 19957 19965 29294 29294 0.07534747510135276 LYNLKLIKF 9 Unmodified _LYNLKLIKF_ 0 0 0 REV__tr|U7SRC1|U7SRC1_FUSNURibosomal-protein-alanineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01704PE=4SV=1 REV__tr|U7SRC1|U7SRC1_FUSNURibosomal-protein-alanineN-acetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01704PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.33544921875 2 576.362985 1150.71142 NaN NaN NaN NaN NaN NaN NaN 123.96 1 119.38 118.88 119.88 -4.5757 0 0 0 0.23508 1 24440 24440 4.756 0 1 + 29783 25027 19958 19966 29295 29295 0.1420892933892901 LYNWLEKE 8 Unmodified _LYNWLEKE_ 0 0 0 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;DMXL2|p.F2385Lfs*5|1|0.29|ENSG00000104093|chr15:51474399-51474399|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7794189453125 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 16.187 1 14.834 14.334 15.334 -1.3534 0 0 0 0.2396 1 2282 2282 0.12286 0 1 29784 858 19959 19967 29296 29296 0.0013803672336507589 LYPASDPCKA 10 Unmodified _LYPASDPCKA_ 0 0 0 REV__ENSG00000205592|ENST00000454784|MUC19 REV__ENSG00000205592|ENST00000454784|MUC19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2828979492188 2 532.757692 1063.50083 0.098227 5.2331E-05 2.0846 0.0011106 2.1828 0.0011629 533.2599432763747 155.33 0.13742 155.33 155.21 155.35 0 5 3 2 0 0 0 0.72988 1 31127 31127 8.1555 0.24537 1 1317800 + 29785 19595 19960 19968 29297 29297 -0.028378960454119806 LYPDEQEEE 9 Unmodified _LYPDEQEEE_ 0 0 0 REV__ENSG00000077942|ENST00000327858|FBLN1 REV__ENSG00000077942|ENST00000327858|FBLN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.33544921875 2 576.240583 1150.46661 0.17673 0.00010184 0.4419 0.00025464 0.61863 0.00035648 576.2411012498006 124.3 0.633 119.72 119.34 119.97 -4.5757 44 17 4 0 0 0 0.72864 1 24440 24440 16.942 9.6531 1 6120300 + + 29786 13505 19961 19969 29298 29298 -0.10260065723332445 LYPDEQEEE 9 Unmodified _LYPDEQEEE_ 0 0 0 REV__ENSG00000077942|ENST00000327858|FBLN1 REV__ENSG00000077942|ENST00000327858|FBLN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3291015625 2 576.240583 1150.46661 0.50384 0.00029033 -0.010571 -6.0914E-06 0.49327 0.00028424 576.2408344656915 124.4 0.84175 119.63 119.21 120.06 -4.7681 44 23 3 0 0 0 0.72864 1 23838 23838 16.942 6.8684 1 4176100 + + 29787 13505 19961 19969 29299 29299 -0.10260065723332445 LYPDIRFY 8 Unmodified _LYPDIRFY_ 0 0 0 REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7937622070312 2 543.784567 1085.55458 -0.13059 -7.1011E-05 -0.89939 -0.00048907 -1.03 -0.00056009 543.7842463197084 106.34 1.6071 102.08 101.13 102.74 -4.2638 157 45 5 0 0 0 0.69085 1 20770 20770 15.768 4.6538 1 34361000 + 29788 14485 19962 19970 29300 29300 0.015226444486188484 LYPDIRFY 8 Unmodified _LYPDIRFY_ 0 0 0 REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7791748046875 2 543.784567 1085.55458 0.045824 2.4918E-05 -1.0743 -0.0005842 -1.0285 -0.00055928 543.7841388172891 106.4 1.737 102.02 101.15 102.89 -4.3764 159 49 5 0 0 0 0.69085 1 20286 20286 15.768 2.2603 1 35868000 + 29789 14485 19962 19970 29301 29301 0.015226444486188484 LYPGRKYRA 9 Unmodified _LYPGRKYRA_ 0 0 0 ENSG00000213231|ENST00000340722|TCL1B ENSG00000213231|ENST00000340722|TCL1B ENSG00000213231|ENST00000340722|TCL1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.216064453125 3 375.217214 1122.62981 NaN NaN NaN NaN NaN NaN NaN 134.1 1 129.23 128.73 129.73 -4.8726 0 0 0 0.19661 1 25763 25763 0.40827 0 1 29790 7690 19963 19971 29302 29302 0.07340246699709496 LYPILNQLF 9 Unmodified _LYPILNQLF_ 0 0 0 REV__ENST00000358731.8_2_5:70754407-70754644:+|nuORF REV__ENST00000358731.8_2_5:70754407-70754644:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 374.0979919433594 3 374.21822 1119.63283 NaN NaN NaN NaN NaN NaN NaN 125.36 1 125.36 124.86 125.86 0 0 0 0 0.23508 1 24726 24726 2.9952 1.0889 1 + 29791 20842 19964 19972 29303 29303 0.07780077033839916 LYPPLMGE 8 Unmodified _LYPPLMGE_ 0 0 0 REV__ENSG00000135722|ENST00000258200|FBXL8 REV__ENSG00000135722|ENST00000258200|FBXL8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23211669921875 2 460.233322 918.45209 NaN NaN NaN NaN NaN NaN NaN 155.87 1 155.87 155.37 156.37 0 0 0 0 0.21486 1 31254 31254 2.8892 0.31174 1 + 29792 16284 19965 19973 29304 29304 -0.010397646144951977 LYQKHVGVL 9 Unmodified _LYQKHVGVL_ 0 0 0 REV__ENST00000254322.2_1_19:14625909-14626227:-|nuORF REV__ENST00000254322.2_1_19:14625909-14626227:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.87896728515625 3 352.878198 1055.61277 NaN NaN NaN NaN NaN NaN NaN 26.261 1 26.261 25.761 26.761 0 0 0 0 0.19636 1 4591 4591 2.4985 0 1 + 29793 20119 19966 19974 29305 29305 0.08718326093912765 LYQLQNTV 8 Unmodified _LYQLQNTV_ 0 0 0 REV__BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant REV__BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26800537109375 2 489.766374 977.518196 0.23562 0.0001154 0.093792 4.5936E-05 0.32941 0.00016134 489.76645378254216 116.48 0.70712 112.12 111.84 112.55 -4.3585 34 19 2 0 0 0 0.58432 1 22405 22405 23.148 2.6948 1 1703100 + 29794 13205 19967 19975 29306 29306 0.028537675519146433 LYQQYTCY 8 Unmodified _LYQQYTCY_ 0 0 0 ATP4A|p.V932A|1|0.08|ENSG00000105675|chr19:35551537-35551537|A/G|missense_variant;ENSG00000105675|ENST00000262623|ATP4A ATP4A|p.V932A|1|0.08|ENSG00000105675|chr19:35551537-35551537|A/G|missense_variant ATP4A|p.V932A|1|0.08|ENSG00000105675|chr19:35551537-35551537|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2652587890625 2 541.236593 1080.45863 NaN NaN NaN NaN NaN NaN NaN 131.13 1 131.13 130.63 131.63 0 0 0 0 0.23182 1 25924 25924 0.25148 0.12861 1 29795 270 19968 19976 29307 29307 -0.07837871453784828 LYQVNETTI 9 Unmodified _LYQVNETTI_ 0 0 0 REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24 REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2843017578125 2 540.782222 1079.54989 0.11926 6.4493E-05 0.15796 8.5421E-05 0.27722 0.00014991 540.782034291695 81.804 0.5181 77.965 77.678 78.196 -3.8392 26 14 3 0 0 0 0.80521 1 15483 15483 15.847 5.0233 1 1054300 + 29796 15387 19969 19977 29308 29308 0.013297155152031337 LYRDTPVV 8 Unmodified _LYRDTPVV_ 0 0 0 nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;GRM1|p.P1015Lfs*16|1|0.39|ENSG00000152822|chr6:146434251-146434251|C/-|frameshift_variant;ENSG00000152822|ENST00000282753|GRM1 nc|ENSG00000152822|Q13255-2|GRM1 nc|ENSG00000152822|Q13255-2|GRM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7694396972656 2 481.768917 961.523281 0.36505 0.00017587 -0.58005 -0.00027945 -0.215 -0.00010358 481.76891487941725 47.036 0.42654 47.036 46.799 47.226 0 14 11 2 0 0 0 0.72428 1 8853 8853 10.824 0 1 844040 29797 4943 19970 19978 29309 29309 0.04098071414523474 LYRHLSRP 8 Unmodified _LYRHLSRP_ 0 0 0 sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1;sp|F5HC79|TRM1_HCMVMTripartiteterminasesubunit1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRM1PE=3SV=1 sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1 sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 521.3021850585938 2 521.30125 1040.58795 NaN NaN NaN NaN NaN NaN NaN 148.54 1 143.83 143.33 144.33 -4.7095 0 0 0 0.21171 1 29499 29499 15.847 0.5987 1 29798 25724 19971 19979 29310 29310 0.06927691011196657 LYRHMIDLIYG 11 Unmodified _LYRHMIDLIYG_ 0 0 0 tr|U7SZZ0|U7SZZ0_FUSNUDNAgyrasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrBPE=3SV=1 tr|U7SZZ0|U7SZZ0_FUSNUDNAgyrasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrBPE=3SV=1 tr|U7SZZ0|U7SZZ0_FUSNUDNAgyrasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2510681152344 3 465.248074 1392.72239 NaN NaN NaN NaN NaN NaN NaN 111.84 1 107.62 107.12 108.12 -4.2289 0 0 0 0.22632 1 21531 21531 0.0059557 0 1 29799 26306 19972 19980 29311 29311 0.04173963650941914 LYRIRFYFPRW 11 Unmodified _LYRIRFYFPRW_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2;JAK2|p.P501Qfs*10|1|0.06|ENSG00000096968|chr9:5069193-5069193|C/-|frameshift_variant;JAK2|p.F556Lfs*12|1|0.35|ENSG00000096968|chr9:5072515-5072515|T/-|frameshift_variant ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 539.558349609375 3 539.633139 1615.87759 NaN NaN NaN NaN NaN NaN NaN 164.48 1 164.48 163.98 164.98 0 0 0 0 0.23698 1 33265 33265 0.094841 0.011491 1 29800 1879 19973 19981 29312 29312 0.09428375567495095 LYRIRLEYKWE 11 Unmodified _LYRIRLEYKWE_ 0 0 0 REV__PTK2|p.P912Lfs*17|2|0.43|ENSG00000169398|chr8:140668399-140668399|G/-|frameshift_variant REV__PTK2|p.P912Lfs*17|2|0.43|ENSG00000169398|chr8:140668399-140668399|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6874389648438 3 523.624309 1567.8511 NaN NaN NaN NaN NaN NaN NaN 72.666 1 72.666 72.166 73.166 0 0 0 0 0.22632 1 14094 14094 0.026206 0 1 + 29801 18099 19974 19982 29313 29313 0.08988641885503057 LYRKIYPE 8 Unmodified _LYRKIYPE_ 0 0 0 sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1;sp|F5HC79|TRM1_HCMVMTripartiteterminasesubunit1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRM1PE=3SV=1 sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1 sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27783203125 2 541.305667 1080.59678 NaN NaN NaN NaN NaN NaN NaN 115.3 1 110.99 110.49 111.49 -4.3136 0 0 0 0.21486 1 22199 22199 9.3474 0.60203 1 29802 25724 19975 19983 29314 29314 0.059706198569983826 LYRKWWLYKQI 11 Unmodified _LYRKWWLYKQI_ 0 0 0 REV__ENSG00000118402|ENST00000369816|ELOVL4 REV__ENSG00000118402|ENST00000369816|ELOVL4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2868041992188 3 532.973161 1595.89765 0.24285 0.00012943 -1.3266 -0.00070706 -1.0838 -0.00057763 532.9718882487464 159.68 0.17772 154.89 154.73 154.91 -4.7952 5 4 2 0 0 0 0.81736 1 31738 31738 1.3296 1.2348 1 938060 + 29803 15550 19976 19984 29315 29315 0.1235412650746639 LYRKWWLYKQI 11 Unmodified _LYRKWWLYKQI_ 0 0 0 REV__ENSG00000118402|ENST00000369816|ELOVL4 REV__ENSG00000118402|ENST00000369816|ELOVL4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.272216796875 3 532.973161 1595.89765 0.48312 0.00025749 1.9304 0.0010289 2.4135 0.0012863 532.9739286935948 142.86 0.17154 137.84 137.76 137.93 -5.0261 6 4 2 0 0 0 0.96225 1 27559 27559 0.08335 0 1 2567400 + 29804 15550 19976 19984 29316 29316 0.1235412650746639 LYRLSGPFLS 10 Unmodified _LYRLSGPFLS_ 0 0 0 REV__nc|ENSG00000214694|A8MVX0|ARHGEF33 REV__nc|ENSG00000214694|A8MVX0|ARHGEF33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3326416015625 2 576.824224 1151.63389 0.67982 0.00039213 3.4363 0.0019821 4.1161 0.0023743 576.8265901643766 119.7 0.18266 115.05 114.95 115.13 -4.645 4 2 2 0 0 0 0.71778 1 22975 22975 9.3831 1.2276 1 1127800 + 29805 19673 19977 19985 29317 29317 0.06414291402757044 LYRREDRRLDI 11 Unmodified _LYRREDRRLDI_ 0 0 0 PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;PTCH1|p.Y1316Tfs*56|3|0.29|ENSG00000185920|chr9:95447311-95447311|G/-|frameshift_variant;PTCH1|p.R1308Efs*64|1|0.24|ENSG00000185920|chr9:95447335-95447335|G/-|frameshift_variant;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 502.79437255859375 3 502.282946 1503.82701 0.11795 5.9247E-05 -3.0847 -0.0015494 -2.9668 -0.0014902 502.28214384028513 138.51 0.11195 133.67 133.62 133.73 -4.84 4 2 2 0 0 0 0.89037 1 26694 26694 0.026206 0 1 462100 29806 7019 19978 19986 29318 29318 0.09524801451834719 LYRRNLMI 8 Unmodified _LYRRNLMI_ 0 0 0 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2102355957031 3 360.211183 1077.61172 NaN NaN NaN NaN NaN NaN NaN 21.451 1 19.73 19.23 20.23 -1.7211 0 0 0 0.23312 1 3356 3356 6.2058 0 1 + 29807 14735 19979 19987 29319 29319 0.07601788453325753 LYRRWNERNQY 11 Unmodified _LYRRWNERNQY_ 0 0 0 REV__ENST00000519078.6_1_10:62538154-62544481:+|nuORF REV__ENST00000519078.6_1_10:62538154-62544481:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2698364257812 3 533.270929 1596.79096 NaN NaN NaN NaN NaN NaN NaN 74.342 1 74.342 73.842 74.842 0 0 0 0 0.22632 1 14435 14435 1.4551 0.8698 1 + 29808 20525 19980 19988 29320 29320 0.01643344274998526 LYRRWNERNQY 11 Unmodified _LYRRWNERNQY_ 0 0 0 REV__ENST00000519078.6_1_10:62538154-62544481:+|nuORF REV__ENST00000519078.6_1_10:62538154-62544481:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2695922851562 3 533.270929 1596.79096 NaN NaN NaN NaN NaN NaN NaN 78.564 1 74.759 74.259 75.259 -3.8048 0 0 0 0.22632 1 14902 14902 1.4551 0.8698 1 + 29809 20525 19980 19988 29321 29321 0.01643344274998526 LYRWKGTY 8 Unmodified _LYRWKGTY_ 0 0 0 REV__ENST00000542008.1_1_19:58144599-58145500:+|nuORF REV__ENST00000542008.1_1_19:58144599-58145500:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7894287109375 2 543.790184 1085.56581 NaN NaN NaN NaN NaN NaN NaN 115.68 1 111.1 110.6 111.6 -4.5815 0 0 0 0.23366 1 22211 22211 0.62683 0 1 + 29810 22869 19981 19989 29322 29322 0.026454665427763757 LYRYFVELWIY 11 Unmodified _LYRYFVELWIY_ 0 0 0 ENSG00000164626|ENST00000359534|KCNK5;KCNK5|p.D373Gfs*3|1|0.07|ENSG00000164626|chr6:39191274-39191275|-/TCCA|frameshift_variant ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2716674804688 3 522.278139 1563.81259 NaN NaN NaN NaN NaN NaN NaN 55.366 1 52.482 51.982 52.982 -2.8837 0 0 0 0.22632 1 10593 10593 0.58532 0.41332 1 29811 5556 19982 19990 29323 29323 0.05323336250989996 LYRYFVELWIY 11 Unmodified _LYRYFVELWIY_ 0 0 0 ENSG00000164626|ENST00000359534|KCNK5;KCNK5|p.D373Gfs*3|1|0.07|ENSG00000164626|chr6:39191274-39191275|-/TCCA|frameshift_variant ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.268310546875 3 522.278139 1563.81259 NaN NaN NaN NaN NaN NaN NaN 105.6 1 101.33 100.83 101.83 -4.2638 0 0 0 0.22632 1 20783 20783 0.0059557 0 1 29812 5556 19982 19990 29324 29324 0.05323336250989996 LYSGRTAPP 9 Unmodified _LYSGRTAPP_ 0 0 0 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;XRN1|p.M1309Cfs*14|1|0.4|ENSG00000114127|chr3:142335462-142335462|T/-|frameshift_variant;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23651123046875 2 481.258717 960.50288 0.417 0.00020069 0.32029 0.00015414 0.73729 0.00035483 481.25845319919785 31.78 0.59933 29.632 29.265 29.864 -2.1483 25 16 2 0 0 0 0.5059 1 5486 5486 19.257 1.122 1 703990 29813 26585;2778 19983 19991 29325 29325 0.02104900754704886 LYSLGLCKY 9 Unmodified _LYSLGLCKY_ 0 0 0 ENST00000581885.1_1_17:62532731-62533407:+|nuORF ENST00000581885.1_1_17:62532731-62533407:+|nuORF ENST00000581885.1_1_17:62532731-62533407:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 530.4512329101562 2 530.280803 1058.54705 NaN NaN NaN NaN NaN NaN NaN 129.58 1 129.58 129.08 130.08 0 0 0 0 0.23508 1 25602 25602 7.9102 0 1 29814 11509 19984 19992 29326 29326 0.02012168856686003 LYSMQSSEHY 10 Unmodified _LYSMQSSEHY_ 0 0 0 REV__DHX29|p.S964Y|1|0.1|ENSG00000067248|chr5:55270680-55270680|G/T|missense_variant REV__DHX29|p.S964Y|1|0.1|ENSG00000067248|chr5:55270680-55270680|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7581176757812 2 622.766245 1243.51794 NaN NaN NaN NaN NaN NaN NaN 63.753 1 60.337 59.837 60.837 -3.4158 0 0 0 2.8426 1 11917 11917 0.26539 0.19213 1 + 29815 13676 19985 19993 29327 29327 -0.09408020230239345 LYSMQSSEHY 10 Unmodified _LYSMQSSEHY_ 0 0 0 REV__DHX29|p.S964Y|1|0.1|ENSG00000067248|chr5:55270680-55270680|G/T|missense_variant REV__DHX29|p.S964Y|1|0.1|ENSG00000067248|chr5:55270680-55270680|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7676391601562 2 622.766245 1243.51794 NaN NaN NaN NaN NaN NaN NaN 35.306 1 33.029 32.529 33.529 -2.2766 0 0 0 0.22588 1 6204 6204 6.7232 1.4263 1 + 29816 13676 19985 19993 29328 29328 -0.09408020230239345 LYSPQESGAL 10 Unmodified _LYSPQESGAL_ 0 0 0 ENST00000569592.1_1_16:27231674-27232048:+|nuORF;ENSG00000155666|ENST00000286096|KDM8;nc|ENSG00000155666|Q8N371-3|KDM8 ENST00000569592.1_1_16:27231674-27232048:+|nuORF ENST00000569592.1_1_16:27231674-27232048:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26904296875 2 532.766571 1063.51859 0.36557 0.00019476 -0.28471 -0.00015168 0.080861 4.308E-05 532.7663402177026 45.074 0.95731 42.209 41.735 42.693 -2.8653 72 26 4 0 0 0 0.34654 1 8109 8109 34.402 2.0962 1 17462000 29817 5056 19986 19994 29329 29329 -0.010628575189002731 LYSQKELRS 9 Unmodified _LYSQKELRS_ 0 0 0 sp|P06473|GB_HCMVAEnvelopeglycoproteinBOS=Humancytomegalovirus(strainAD169)OX=10360GN=gBPE=1SV=1;sp|F5HB53|GB_HCMVMEnvelopeglycoproteinBOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gBPE=3SV=1 sp|P06473|GB_HCMVAEnvelopeglycoproteinBOS=Humancytomegalovirus(strainAD169)OX=10360GN=gBPE=1SV=1 sp|P06473|GB_HCMVAEnvelopeglycoproteinBOS=Humancytomegalovirus(strainAD169)OX=10360GN=gBPE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2164611816406 3 375.208384 1122.60332 NaN NaN NaN NaN NaN NaN NaN 32.95 1 30.803 30.303 31.303 -2.1468 0 0 0 0.23508 1 5733 5733 9.544 1.5986 1 29818 25745 19987 19995 29330 29330 0.04692513017721467 LYTEDMFME 9 Unmodified _LYTEDMFME_ 0 0 0 REV__nc|ENSG00000070748|P28329-3|CHAT REV__nc|ENSG00000070748|P28329-3|CHAT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.263671875 2 589.74085 1177.46715 0.48022 0.0002832 -2.0426 -0.0012046 -1.5624 -0.00092141 589.7421833826778 138.47 0.13834 133.52 133.43 133.57 -4.952 5 3 2 0 0 0 0.87258 1 26611 26611 4.3292 2.8473 1 1197700 + 29819 14264 19988 19996 29331 29331 -0.11448685599475539 LYTMVKYY 8 Unmodified _LYTMVKYY_ 0 0 0 tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1 tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1 tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2589721679688 2 540.775354 1079.53615 0.58513 0.00031643 0.50411 0.00027261 1.0892 0.00058904 541.2778668129026 104.97 0.58701 104.97 104.59 105.17 0 26 16 2 0 0 0 0.70613 1 20566 20566 13.508 3.3245 1 1967800 29820 25875 19989 19997 29332 29332 -0.00043233517590124393 LYTVTGQSWP 10 Unmodified _LYTVTGQSWP_ 0 0 0 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3243408203125 2 576.290214 1150.56587 0.28152 0.00016224 0.75981 0.00043787 1.0413 0.00060011 576.2909271056251 114.62 0.45882 114.62 114.26 114.72 0 17 12 2 0 0 0 0.871 1 22534 22534 14.838 10.509 1 3567400 29821 4606 19990 19998 29333 29333 -0.0033857824791994062 LYTWRNEEFRR 11 Unmodified _LYTWRNEEFRR_ 0 0 0 ENSG00000181656|ENST00000315033|GPR88 ENSG00000181656|ENST00000315033|GPR88 ENSG00000181656|ENST00000315033|GPR88 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3995361328125 2 785.399681 1568.78481 NaN NaN NaN NaN NaN NaN NaN 14.704 1 13.589 13.089 14.089 -1.1142 0 0 0 0.22632 1 2222 2222 0 0 1 29822 6733 19991 19999 29334 29334 0.023168260434204058 LYTWRNEEFRR 11 Unmodified _LYTWRNEEFRR_ 0 0 0 ENSG00000181656|ENST00000315033|GPR88 ENSG00000181656|ENST00000315033|GPR88 ENSG00000181656|ENST00000315033|GPR88 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3992309570312 2 785.399681 1568.78481 NaN NaN NaN NaN NaN NaN NaN 19.607 1 18.21 17.71 18.71 -1.3966 0 0 0 0.23698 1 3237 3237 0 0 1 29823 6733 19991 19999 29335 29335 0.023168260434204058 LYTWRNEEFRR 11 Unmodified _LYTWRNEEFRR_ 0 0 0 ENSG00000181656|ENST00000315033|GPR88 ENSG00000181656|ENST00000315033|GPR88 ENSG00000181656|ENST00000315033|GPR88 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3991088867188 2 785.399681 1568.78481 NaN NaN NaN NaN NaN NaN NaN 14.088 1 12.915 12.415 13.415 -1.173 0 0 0 0.22632 1 1882 1882 0 0 1 29824 6733 19991 19999 29336 29336 0.023168260434204058 LYVLFSALIL 10 Unmodified _LYVLFSALIL_ 0 0 0 REV__nc|ENSG00000075043|O43526-4|KCNQ2 REV__nc|ENSG00000075043|O43526-4|KCNQ2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.328125 2 576.357368 1150.70018 NaN NaN NaN NaN NaN NaN NaN 129.56 1 124.82 124.32 125.32 -4.7408 0 0 0 0.22588 1 24930 24930 6.7232 2.3939 1 + 29825 14324 19992 20000 29337 29337 0.13086107244816958 LYVLWVFF 8 Unmodified _LYVLWVFF_ 0 0 0 ENST00000395535.7_1_7:54819960-54820020:-|nuORF ENST00000395535.7_1_7:54819960-54820020:-|nuORF ENST00000395535.7_1_7:54819960-54820020:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.793701171875 2 543.804771 1085.59499 NaN NaN NaN NaN NaN NaN NaN 152.88 1 148.11 147.61 148.61 -4.7684 0 0 0 0.21022 1 30379 30379 17.087 2.5049 1 29826 9432 19993 20001 29338 29338 0.05561610839026798 LYVLYITYR 9 Unmodified _LYVLYITYR_ 0 0 0 ENST00000270861.9_1_4:128807106-128807163:+|nuORF ENST00000270861.9_1_4:128807106-128807163:+|nuORF ENST00000270861.9_1_4:128807106-128807163:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2720336914062 2 602.342249 1202.66995 NaN NaN NaN NaN NaN NaN NaN 78.208 1 74.745 74.245 75.245 -3.4633 0 0 0 0.23508 1 15271 15271 12.532 3.9383 1 29827 8402 19994 20002 29339 29339 0.07671748579605264 LYVQETEKA 9 Unmodified _LYVQETEKA_ 0 0 0 nc|ENSG00000162520|Q9H7C4-2|SYNC;ENSG00000162520|ENST00000409190|SYNC nc|ENSG00000162520|Q9H7C4-2|SYNC nc|ENSG00000162520|Q9H7C4-2|SYNC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2838745117188 2 540.782222 1079.54989 0.63973 0.00034595 -0.55973 -0.00030269 0.080001 4.3263E-05 540.7816892014318 77.878 0.42014 77.878 77.702 78.122 0 18 11 2 0 0 0 0.34411 1 15136 15136 29.082 9.8246 1 1758100 29828 5338 19995 20003 29340 29340 0.013297155152031337 LYVQETEKA 9 Unmodified _LYVQETEKA_ 0 0 0 nc|ENSG00000162520|Q9H7C4-2|SYNC;ENSG00000162520|ENST00000409190|SYNC nc|ENSG00000162520|Q9H7C4-2|SYNC nc|ENSG00000162520|Q9H7C4-2|SYNC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2839965820312 2 540.782222 1079.54989 -0.08988 -4.8606E-05 0.39095 0.00021142 0.30107 0.00016282 540.7824115930663 81.631 0.59622 77.943 77.626 78.223 -3.6879 25 16 2 0 0 0 0.34411 1 15577 15577 29.082 5.2918 1 1592700 29829 5338 19995 20003 29341 29341 0.013297155152031337 LYWIKGSGY 9 Unmodified _LYWIKGSGY_ 0 0 0 REV__ENST00000375856.4_1_13:110408094-110408364:-|nuORF REV__ENST00000375856.4_1_13:110408094-110408364:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7722778320312 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 161.26 1 156.46 155.96 156.96 -4.7952 0 0 0 0.23508 1 32070 32070 12.532 0.89125 1 + 29830 21070 19996 20004 29342 29342 0.015226444486188484 LYWKIQVP 8 Unmodified _LYWKIQVP_ 0 0 0 ENST00000248594.10_1_7:77268593-77268677:+|nuORF ENST00000248594.10_1_7:77268593-77268677:+|nuORF ENST00000248594.10_1_7:77268593-77268677:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.700927734375 2 523.805303 1045.59605 NaN NaN NaN NaN NaN NaN NaN 137.5 1 132.66 132.16 133.16 -4.84 0 0 0 0.21486 1 26490 26490 5.7604 0.028577 1 29831 8214 19997 20005 29343 29343 0.07507825207926544 LYWLNEKW 8 Unmodified _LYWLNEKW_ 0 0 0 nc|ENSG00000080224|Q9UF33-2|EPHA6;nc|ENSG00000080224|Q9UF33-3|EPHA6 nc|ENSG00000080224|Q9UF33-2|EPHA6 nc|ENSG00000080224|Q9UF33-2|EPHA6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3267211914062 2 576.297842 1150.58113 NaN NaN NaN NaN NaN NaN NaN 172.31 1 167.52 167.02 168.02 -4.7898 0 0 0 0.23487 1 35096 35096 0.62683 0 1 29832 12239 19998 20006 29344 29344 0.01186333339956036 LYWLPLYIA 9 Unmodified _LYWLPLYIA_ 0 0 0 nc|ENSG00000134955|Q8TED4-3|SLC37A2;ENST00000526405.5_1_11:124933263-124955028:+|nuORF;ENSG00000134955|ENST00000403796|SLC37A2;nc|ENSG00000134955|Q8TED4-2|SLC37A2 nc|ENSG00000134955|Q8TED4-3|SLC37A2 nc|ENSG00000134955|Q8TED4-3|SLC37A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3319702148438 2 576.328611 1150.64267 NaN NaN NaN NaN NaN NaN NaN 158.1 1 158.1 157.6 158.6 0 0 0 0 0.1966 1 31743 31743 0.12781 0 1 29833 3887 19999 20007 29345 29345 0.07337265039222984 LYWVRPLFREF 11 Unmodified _LYWVRPLFREF_ 0 0 0 REV__PCIF1|p.C470Y|1|0.33|ENSG00000100982|chr20:45946096-45946096|G/A|missense_variant REV__PCIF1|p.C470Y|1|0.33|ENSG00000100982|chr20:45946096-45946096|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 509.2678527832031 3 509.281995 1524.82415 0.38175 0.00019442 -0.80132 -0.0004081 -0.41957 -0.00021368 509.28202272512766 160.58 0.18375 155.32 155.17 155.36 -5.2526 7 4 2 0 0 0 0.89002 1 31147 31147 1.4551 1.4546 1 1096000 + 29834 24447 20000 20008 29346 29346 0.08273578064972753 LYYKRDRWQEL 11 Unmodified _LYYKRDRWQEL_ 0 0 0 NLGN2|p.R704W|1|0.2|ENSG00000169992|chr17:7417401-7417401|C/T|missense_variant NLGN2|p.R704W|1|0.2|ENSG00000169992|chr17:7417401-7417401|C/T|missense_variant NLGN2|p.R704W|1|0.2|ENSG00000169992|chr17:7417401-7417401|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4107055664062 2 785.412257 1568.80996 NaN NaN NaN NaN NaN NaN NaN 100.37 1 96.385 95.885 96.885 -3.9895 0 0 0 0.2367 1 19281 19281 2.9952 0 1 29835 12692 20001 20009 29347 29347 0.048308808460433283 LYYYRKVF 8 Unmodified _LYYYRKVF_ 0 0 0 REV__MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant REV__MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3153076171875 2 576.316035 1150.61752 NaN NaN NaN NaN NaN NaN NaN 115.9 1 111.55 111.05 112.05 -4.3585 0 0 0 0.21181 1 22313 22313 15.768 6.3851 1 + 29836 14276 20002 20010 29348 29348 0.04823210236668274 MAAEKLKE 8 Unmodified _MAAEKLKE_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.52447509765625 2 460.249503 918.484453 0.21626 9.9535E-05 -0.36267 -0.00016692 -0.14641 -6.7385E-05 460.2492893547999 66.429 0.55961 62.933 62.66 63.219 -3.4965 34 15 3 0 0 0 0.70344 1 12451 12451 13.906 3.0821 1 3858700 29837 2859 20003 20011 29349 29349 0.021950227884985907 MAAEKLKE 8 Unmodified _MAAEKLKE_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.249503 918.484453 -0.094955 -4.3703E-05 0.33893 0.00015599 0.24398 0.00011229 460.24959537828227 63.15 0.49256 63.15 62.874 63.367 0 0.1502 0.00045313 NaN 13.906 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3462600 29838 2859 20003 20011 0.021950227884985907 MAAEKLKE 8 Unmodified _MAAEKLKE_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.249503 918.484453 -0.090779 -4.1781E-05 0.033976 1.5638E-05 -0.056803 -2.6144E-05 460.24947631502783 65.993 0.58374 62.946 62.644 63.227 -3.047 -0.05323 0.00017242 NaN 13.906 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 5760600 29839 2859 20003 20011 0.021950227884985907 MAAEKLKE 8 Unmodified _MAAEKLKE_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 460.249503 918.484453 0.30908 0.00014225 -0.59637 -0.00027448 -0.28729 -0.00013222 460.2492132604623 66.253 0.56129 62.97 62.684 63.246 -3.2832 -0.030032 -0.00040781 NaN 13.906 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4157300 29840 2859 20003 20011 0.021950227884985907 MAAVQFQY 8 Unmodified _MAAVQFQY_ 0 0 0 REV__ENSG00000101605|ENST00000356443|MYOM1 REV__ENSG00000101605|ENST00000356443|MYOM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7442321777344 2 479.228571 956.442588 NaN NaN NaN NaN NaN NaN NaN 139.17 1 134.22 133.72 134.72 -4.952 0 0 0 0.21323 1 26769 26769 14.582 0.67564 1 + 29841 14795 20004 20012 29350 29350 -0.03737532900026963 MACGCDCDCNH 11 Unmodified _MACGCDCDCNH_ 0 0 0 ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 391.10821533203125 3 391.107973 1170.30209 NaN NaN NaN NaN NaN NaN NaN 167.9 1 162.95 162.45 163.45 -4.948 0 0 0 0.23698 1 33069 33069 0 0 1 29842 9975 20005 20013 29351 29351 -0.2762488727407799 MACGCDCDCNH 11 Unmodified _MACGCDCDCNH_ 0 0 0 ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 391.1087646484375 3 391.107973 1170.30209 NaN NaN NaN NaN NaN NaN NaN 170.64 1 165.73 165.23 166.23 -4.9149 0 0 0 0.23698 1 33749 33749 0 0 1 29843 9975 20005 20013 29352 29352 -0.2762488727407799 MACGCDCDCNH 11 Unmodified _MACGCDCDCNH_ 0 0 0 ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 391.1095275878906 3 391.107973 1170.30209 NaN NaN NaN NaN NaN NaN NaN 172.06 1 167.16 166.66 167.66 -4.8977 0 0 0 0.23698 1 34112 34112 0 0 1 29844 9975 20005 20013 29353 29353 -0.2762488727407799 MACGCDCDCNH 11 Unmodified _MACGCDCDCNH_ 0 0 0 ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 391.1089172363281 3 391.107973 1170.30209 NaN NaN NaN NaN NaN NaN NaN 172.48 1 167.58 167.08 168.08 -4.8977 0 0 0 0.23698 1 34210 34210 0 0 1 29845 9975 20005 20013 29354 29354 -0.2762488727407799 MACGCDCDCNH 11 Unmodified _MACGCDCDCNH_ 0 0 0 ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 391.1086120605469 3 391.107973 1170.30209 NaN NaN NaN NaN NaN NaN NaN 173.33 1 168.43 167.93 168.93 -4.8977 0 0 0 0.23698 1 34412 34412 0 0 1 29846 9975 20005 20013 29355 29355 -0.2762488727407799 MACGCDCDCNH 11 Unmodified _MACGCDCDCNH_ 0 0 0 ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 391.1088562011719 3 391.107973 1170.30209 NaN NaN NaN NaN NaN NaN NaN 175.06 1 170.18 169.68 170.68 -4.8845 0 0 0 0.23698 1 34799 34799 0 0 1 29847 9975 20005 20013 29356 29356 -0.2762488727407799 MACGCDCDCNH 11 Unmodified _MACGCDCDCNH_ 0 0 0 ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 391.10888671875 3 391.107973 1170.30209 NaN NaN NaN NaN NaN NaN NaN 174.72 1 169.83 169.33 170.33 -4.8916 0 0 0 0.23698 1 34793 34793 0 0 1 29848 9975 20005 20013 29357 29357 -0.2762488727407799 MADWNNCYY 9 Unmodified _MADWNNCYY_ 0 0 0 ENSG00000067704|ENST00000366922|IARS2;IARS2|p.Y609Sfs*33|1|0.05|ENSG00000067704|chr1:220126831-220126832|-/CAGAAAATGAA|frameshift_variant ENSG00000067704|ENST00000366922|IARS2 ENSG00000067704|ENST00000366922|IARS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2664184570312 2 590.215334 1178.41612 0.33684 0.00019881 1.1543 0.00068131 1.4912 0.00088012 590.215765369138 116.9 0.84427 116.9 116.53 117.38 0 33 23 2 0 0 0 0.49624 2 23096 23096;23108 2.6312 0 1 5782000 29849 1392 20006 20014 29358;29359 29358 -0.16595589853659476 MAFRMSTAAT 10 Unmodified _MAFRMSTAAT_ 0 0 0 REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;REV__KMT2D|p.V3089Wfs*30|1|0.12|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant;REV__KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7754516601562 2 543.757169 1085.49979 0.31098 0.0001691 -0.49295 -0.00026805 -0.18197 -9.895E-05 543.7572321744342 20.173 1.1597 20.173 19.791 20.951 0 48 32 2 0 0 0 0.67319 1 3428 3428 13.906 2.4113 1 555770 + 29850 17938;23733;23731 20007 20015 29360 29360 -0.03954433685976255 MAFWGKRW 8 Unmodified _MAFWGKRW_ 0 0 0 REV__ENSG00000047365|ENST00000303965|ARAP2 REV__ENSG00000047365|ENST00000303965|ARAP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2645874023438 2 541.273647 1080.53274 NaN NaN NaN NaN NaN NaN NaN 152.29 1 152.29 151.79 152.79 0 0 0 0 0.23749 1 30504 30504 0.12286 0 1 + 29851 14062 20008 20016 29361 29361 -0.004304387809270338 MAGTIYFL 8 Unmodified _MAGTIYFL_ 0 0 0 ENSG00000115365|ENST00000450366|LANCL1 ENSG00000115365|ENST00000450366|LANCL1 ENSG00000115365|ENST00000450366|LANCL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2386779785156 2 458.235864 914.457176 NaN NaN NaN NaN NaN NaN NaN 105.07 1 100.99 100.49 101.49 -4.082 0 0 0 0.21486 1 20211 20211 11.114 0.29054 1 29852 2851 20009 20017 29362 29362 -0.0034746075187968017 MAGWPHQAY 9 Unmodified _MAGWPHQAY_ 0 0 0 ENST00000568777.5_1_15:72647792-72649010:-|nuORF ENST00000568777.5_1_15:72647792-72649010:-|nuORF ENST00000568777.5_1_15:72647792-72649010:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 531.2491455078125 2 530.737094 1059.45964 0.26127 0.00013867 1.2717 0.00067493 1.533 0.0008136 530.7379202753284 37.861 0.65656 35.523 35.153 35.81 -2.3375 62 18 5 0 0 0 0.56979 1 6756 6756 4.7159 0 1 22146000 29853 11397 20010 20018 29363 29363 -0.0677161229423291 MAHAPVGK 8 Unmodified _MAHAPVGK_ 0 0 0 REV__ENSG00000127249|ENST00000342695|ATP13A4 REV__ENSG00000127249|ENST00000342695|ATP13A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 406.72119140625 2 405.718173 809.421793 -0.00010155 -4.1202E-08 1.2589 0.00051075 1.2588 0.00051071 405.7186278000791 138.64 0.97711 138.64 138.32 139.29 0 63 27 3 0 0 0 8448 1 27525 27525 3.2813 0 1 27657000 + 29854 15881 20011 20019 29364 29364 0.00945921510970038 MAHAPVGK 8 Unmodified _MAHAPVGK_ 0 0 0 REV__ENSG00000127249|ENST00000342695|ATP13A4 REV__ENSG00000127249|ENST00000342695|ATP13A4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 405.718173 809.421793 -0.00010155 -4.1202E-08 1.2589 0.00051075 1.2588 0.00051071 405.7186278000791 138.64 0.97711 138.64 138.32 139.29 0 -0.042749 -3.7162E-05 NaN 3.2813 63 27 3 NaN NaN NaN NaN 0 NaN NaN 0 27657000 + 29855 15881 20011 20019 0.00945921510970038 MAHAPVGK 8 Unmodified _MAHAPVGK_ 0 0 0 REV__ENSG00000127249|ENST00000342695|ATP13A4 REV__ENSG00000127249|ENST00000342695|ATP13A4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 405.718173 809.421793 -0.12254 -4.9716E-05 1.3231 0.00053682 1.2006 0.0004871 405.71864585873533 143.35 0.97363 138.69 138.3 139.28 -4.656 0.01512 1.4964E-05 NaN 3.2813 60 27 3 NaN NaN NaN NaN 0 NaN NaN 0 23794000 + 29856 15881 20011 20019 0.00945921510970038 MAHAPVGK 8 Unmodified _MAHAPVGK_ 0 0 0 REV__ENSG00000127249|ENST00000342695|ATP13A4 REV__ENSG00000127249|ENST00000342695|ATP13A4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 405.718173 809.421793 0.080516 3.2667E-05 1.173 0.00047593 1.2536 0.00050859 405.7185586822291 143.74 1.0078 138.72 138.38 139.39 -5.0261 0.039428 -0.00010682 NaN 3.2813 72 28 3 NaN NaN NaN NaN 0 NaN NaN 0 24253000 + 29857 15881 20011 20019 0.00945921510970038 MAHAPVGK 8 Unmodified _MAHAPVGK_ 0 0 0 REV__ENSG00000127249|ENST00000342695|ATP13A4 REV__ENSG00000127249|ENST00000342695|ATP13A4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 405.718173 809.421793 -0.18034 -7.3168E-05 1.5004 0.00060872 1.32 0.00053556 405.7187017070045 143.57 1.1213 138.67 138.3 139.42 -4.8982 -0.011799 0.00015878 NaN 3.2813 70 31 3 NaN NaN NaN NaN 0 NaN NaN 0 24991000 + 29858 15881 20011 20019 0.00945921510970038 MALTYTKGTG 10 Unmodified _MALTYTKGTG_ 0 0 0 REV__HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant REV__HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2676391601562 2 521.765517 1041.51648 0.11007 5.7432E-05 1.3458 0.0007022 1.4559 0.00075963 521.7655791380654 15.467 1.0042 15.467 15.125 16.129 0 39 28 2 0 0 0 0.42762 1 2322 2322 10.151 1.7063 1 387290 + 29859 16018 20012 20020 29365 29365 -0.00261609528365625 MALVLLGVI 9 Unmodified _MALVLLGVI_ 0 0 0 REV__ENST00000575524.1_1_17:4846390-4846588:+|nuORF REV__ENST00000575524.1_1_17:4846390-4846588:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646423339844 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 12.357 1 11.228 10.728 11.728 -1.1293 0 0 0 0.1963 1 1510 1510 0.0033805 0 1 + 29860 15126 20013 20021 29366 29366 0.11602251104375227 MAMAQRTMF 9 Unmodified _MAMAQRTMF_ 0 0 0 ENST00000407924.2_1_6:27705341-27705923:-|nuORF ENST00000407924.2_1_6:27705341-27705923:-|nuORF ENST00000407924.2_1_6:27705341-27705923:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7765502929688 2 543.74829 1085.48203 0.029336 1.5951E-05 -0.42709 -0.00023223 -0.39776 -0.00021628 543.7481313052137 48.075 0.35099 45.133 45.006 45.357 -2.9421 14 9 2 0 0 0 0.41081 1 8775 8775 0.12781 0 1 776710 29861 9555 20014 20022 29367 29367 -0.05729472212465225 MASLLEASFP 10 Unmodified _MASLLEASFP_ 0 0 0 REV__nc|ENSG00000087258|P09471-2|GNAO1 REV__nc|ENSG00000087258|P09471-2|GNAO1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2666625976562 2 533.267893 1064.52123 NaN NaN NaN NaN NaN NaN NaN 142.49 1 137.59 137.09 138.09 -4.8982 0 0 0 2.8426 1 27495 27495 0.84494 0.78108 1 + 29862 14497 20015 20023 29368 29368 -0.008447253855820236 MASMDHLIAY 10 Unmodified _MASMDHLIAY_ 0 0 0 ENST00000405333.5_1_2:10581959-10582013:-|nuORF ENST00000405333.5_1_2:10581959-10582013:-|nuORF ENST00000405333.5_1_2:10581959-10582013:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3124389648438 2 576.264827 1150.5151 NaN NaN NaN NaN NaN NaN NaN 86.409 1 82.458 81.958 82.958 -3.9503 0 0 0 0.22535 1 16450 16450 20.454 2.3186 1 29863 9530 20016 20024 29369 29369 -0.054135668887738575 MATKLWAGP 9 Unmodified _MATKLWAGP_ 0 0 0 ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant;ZNF462|p.P1613Rfs*11|1|0.4|ENSG00000148143|chr9:106928746-106928746|C/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462 ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2671203613281 2 487.760038 973.505523 0.094453 4.6071E-05 2.6805 0.0013074 2.7749 0.0013535 487.7623264963329 43.172 4.6741 40.414 40.021 44.695 -2.7581 407 133 6 0 0 0 0.40602 1 7765 7765 25.399 1.3787 1 4172199999.9999995 29864 4728 20017 20025 29370 29370 0.017710328880070847 MAVRIDNP 8 Unmodified _MAVRIDNP_ 0 0 0 REV__tr|U7T5A0|U7T5A0_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00179PE=3SV=1 REV__tr|U7T5A0|U7T5A0_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00179PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2383728027344 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 115.15 1 110.67 110.17 111.17 -4.4726 0 0 0 0.18898 1 22693 22693 28.487 9.0478 1 + 29865 25407 20018 20026 29371 29371 0.003732718485252917 MAVRIDNP 8 Unmodified _MAVRIDNP_ 0 0 0 REV__tr|U7T5A0|U7T5A0_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00179PE=3SV=1 REV__tr|U7T5A0|U7T5A0_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00179PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2379150390625 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 115.18 1 110.62 110.12 111.12 -4.555 0 0 0 0.20294 1 22112 22112 23.148 3.7094 1 + 29866 25407 20018 20026 29372 29372 0.003732718485252917 MAYLRCYY 8 Unmodified _MAYLRCYY_ 0 0 0 REV__ENSG00000009844|ENST00000367630|VTA1 REV__ENSG00000009844|ENST00000367630|VTA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.275146484375 2 541.743531 1081.47251 0.04474 2.4238E-05 -0.5338 -0.00028918 -0.48906 -0.00026495 541.7432028903127 96.415 0.59738 92.496 92.256 92.853 -3.9194 24 16 2 0 0 0 0.88445 1 18489 18489 1.7423 0 1 2129500 + 29867 13913 20019 20027 29373 29373 -0.06496917226354526 MCACACMCTC 10 Unmodified _MCACACMCTC_ 0 0 0 ENST00000544665.7_1_16:31343047-31343377:+|nuORF ENST00000544665.7_1_16:31343047-31343377:+|nuORF ENST00000544665.7_1_16:31343047-31343377:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 520.1405029296875 2 520.136958 1038.25936 NaN NaN NaN NaN NaN NaN NaN 164.23 1 159.44 158.94 159.94 -4.7898 0 0 0 0.22588 1 32805 32805 0 0 1 29868 11112 20020 20028 29374 29374 -0.2582369692752309 MCCEEACSPN 10 Unmodified _MCCEEACSPN_ 0 0 0 nc|ENSG00000127863|Q9NS68-3|TNFRSF19;TNFRSF19|p.A359Lfs*25|1|0.31|ENSG00000127863|chr13:23668924-23668924|G/-|frameshift_variant;TNFRSF19|p.L398Rfs*4|1|0.07|ENSG00000127863|chr13:23669042-23669043|-/AAGACGTT|frameshift_variant;ENSG00000127863|ENST00000248484|TNFRSF19;nc|ENSG00000127863|Q9NS68|TNFRSF19 nc|ENSG00000127863|Q9NS68-3|TNFRSF19 nc|ENSG00000127863|Q9NS68-3|TNFRSF19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7796630859375 2 543.671588 1085.32862 0.69176 0.00037609 -0.55526 -0.00030188 0.1365 7.421E-05 543.6735388519298 78.034 0.76907 78.034 77.634 78.404 0 65 21 5 0 0 0 0.5313 1 15120 15120 0.043787 0 1 3472900 29869 3493 20021 20029 29375 29375 -0.21062875111101675 MCCYTKSQEDS 11 Unmodified _MCCYTKSQEDS_ 0 0 0 ENST00000443035.7_1_15:65983326-65983392:-|nuORF ENST00000443035.7_1_15:65983326-65983392:-|nuORF ENST00000443035.7_1_15:65983326-65983392:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 647.7413330078125 2 647.741056 1293.46756 NaN NaN NaN NaN NaN NaN NaN 8.2928 1 7.6137 7.1137 8.1137 -0.67913 0 0 0 0.23698 1 846 846 0.30703 0 1 29870 9909 20022 20030 29376 29376 -0.16743633941928238 MCEEPEGCDCE 11 Unmodified _MCEEPEGCDCE_ 0 0 0 REV__nc|ENSG00000148848|O43184-3|ADAM12 REV__nc|ENSG00000148848|O43184-3|ADAM12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7673950195312 2 622.682349 1243.35015 NaN NaN NaN NaN NaN NaN NaN 145.42 1 140.75 140.25 141.25 -4.6694 0 0 0 0.22632 1 28827 28827 0 0 1 + 29871 12937 20023 20031 29377 29377 -0.26179534873017474 MCGGADEEE 9 Unmodified _MCGGADEEE_ 0 0 0 REV__INSRR|p.L920Cfs*37|2|0.34|ENSG00000027644|chr1:156844261-156844261|C/-|frameshift_variant REV__INSRR|p.L920Cfs*37|2|0.34|ENSG00000027644|chr1:156844261-156844261|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.09124755859375 3 314.105609 939.294997 NaN NaN NaN NaN NaN NaN NaN 129.84 1 129.84 129.34 130.34 0 0 0 0 0.23508 1 25654 25654 0.26902 0.26902 1 + 29872 23664 20024 20032 29378 29378 -0.17707837287002803 MCGGADEEE 9 Unmodified _MCGGADEEE_ 0 0 0 REV__INSRR|p.L920Cfs*37|2|0.34|ENSG00000027644|chr1:156844261-156844261|C/-|frameshift_variant REV__INSRR|p.L920Cfs*37|2|0.34|ENSG00000027644|chr1:156844261-156844261|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1059875488281 3 314.105609 939.294997 NaN NaN NaN NaN NaN NaN NaN 130.59 1 130.59 130.09 131.09 0 0 0 0 0.23508 1 25813 25813 0.26902 0.26902 1 + 29873 23664 20024 20032 29379 29379 -0.17707837287002803 MCISTFYH 8 Unmodified _MCISTFYH_ 0 0 0 REV__PKD1|p.V1376M|1|0.61|ENSG00000008710|chr16:2111041-2111041|C/T|missense_variant REV__PKD1|p.V1376M|1|0.61|ENSG00000008710|chr16:2111041-2111041|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.2222595214844 3 334.478829 1000.41466 -0.41258 -0.000138 -0.67518 -0.00022583 -1.0878 -0.00036383 334.4802715131949 125.99 1.0702 125.99 125.47 126.54 0 133 29 7 0 0 0 1.0277 1 24936 24936 1.6526 0 1 15147000 + 29874 24476 20025 20033 29380 29380 -0.08553179151783752 MCSPPPPPP 9 Unmodified _MCSPPPPPP_ 0 0 0 REV__ENST00000451786.5_1_7:130793498-130794893:-|nuORF REV__ENST00000451786.5_1_7:130793498-130794893:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5423583984375 2 461.711699 921.408845 0.40007 0.00018472 -0.51441 -0.00023751 -0.11434 -5.2793E-05 461.71111643364486 42.132 1.4406 42.132 41.164 42.605 0 47 40 2 0 0 0 0.59384 1 7862 7862 13.508 0.97634 1 653980 + 29875 21814 20026 20034 29381 29381 -0.05500277663441011 MDAGVSGL 8 Unmodified _MDAGVSGL_ 0 0 0 nc|ENSG00000165164|Q6ZTR5-6|CFAP47 nc|ENSG00000165164|Q6ZTR5-6|CFAP47 nc|ENSG00000165164|Q6ZTR5-6|CFAP47 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2216796875 2 375.178546 748.34254 NaN NaN NaN NaN NaN NaN NaN 82.18 1 78.487 77.987 78.987 -3.6934 0 0 0 0.21452 1 15670 15670 13.508 0 1 29876 12428 20027 20035 29382 29382 -0.041697702338410636 MDCPCNCDDGM 11 Unmodified _MDCPCNCDDGM_ 0 0 0 REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2947387695312 2 602.165812 1202.31707 NaN NaN NaN NaN NaN NaN NaN 158.16 1 152.88 152.38 153.38 -5.2748 0 0 0 0.23698 1 30696 30696 0 0 1 + 29877 16255 20028 20036 29383 29383 -0.2759944019676368 MDDCCAACTC 10 Unmodified _MDDCCAACTC_ 0 0 0 REV__DEAF1|p.F297Lfs*18|1|0.13|ENSG00000177030|chr11:681069-681069|A/-|frameshift_variant REV__DEAF1|p.F297Lfs*18|1|0.13|ENSG00000177030|chr11:681069-681069|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 518.2821655273438 2 518.139066 1034.26358 NaN NaN NaN NaN NaN NaN NaN 136.13 1 136.13 135.63 136.63 0 0 0 0 0.22588 1 26971 26971 1.6526 1.6526 1 + 29878 13661 20029 20037 29384 29384 -0.25218192908596393 MDELKYYY 8 Unmodified _MDELKYYY_ 0 0 0 nc|ENSG00000165046|Q2VYF4-2|LETM2;ENSG00000165046|ENST00000379957|LETM2;LETM2|p.L155Wfs*8|1|0.18|ENSG00000165046|chr8:38392957-38392958|-/GGATG|frameshift_variant;nc|ENSG00000165046|Q2VYF4-3|LETM2 nc|ENSG00000165046|Q2VYF4-2|LETM2 nc|ENSG00000165046|Q2VYF4-2|LETM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2116394042969 3 375.503809 1123.4896 -0.18025 -6.7683E-05 0.18728 7.0325E-05 0.0070367 2.6423E-06 375.5037890223516 63.556 0.61942 60.558 60.185 60.804 -2.9975 35 17 3 0 0 0 1.0158 1 12226 12226 10.074 8.1676 1 1649900 29879 5590 20030 20038 29385 29385 -0.06720718139558812 MDELKYYY 8 Unmodified _MDELKYYY_ 0 0 0 nc|ENSG00000165046|Q2VYF4-2|LETM2;ENSG00000165046|ENST00000379957|LETM2;LETM2|p.L155Wfs*8|1|0.18|ENSG00000165046|chr8:38392957-38392958|-/GGATG|frameshift_variant;nc|ENSG00000165046|Q2VYF4-3|LETM2 nc|ENSG00000165046|Q2VYF4-2|LETM2 nc|ENSG00000165046|Q2VYF4-2|LETM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2061767578125 3 375.503809 1123.4896 0.18827 7.0695E-05 -0.14243 -5.3484E-05 0.045837 1.7212E-05 375.503645688462 63.929 0.52478 60.513 60.286 60.811 -3.4158 24 14 2 0 0 0 0.72935 1 11915 11915 10.074 5.1769 1 1478300 29880 5590 20030 20038 29386 29386 -0.06720718139558812 MDELKYYY 8 Unmodified _MDELKYYY_ 0 0 0 nc|ENSG00000165046|Q2VYF4-2|LETM2;ENSG00000165046|ENST00000379957|LETM2;LETM2|p.L155Wfs*8|1|0.18|ENSG00000165046|chr8:38392957-38392958|-/GGATG|frameshift_variant;nc|ENSG00000165046|Q2VYF4-3|LETM2 nc|ENSG00000165046|Q2VYF4-2|LETM2 nc|ENSG00000165046|Q2VYF4-2|LETM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2116394042969 3 375.503809 1123.4896 -0.41998 -0.0001577 0.19416 7.2909E-05 -0.22582 -8.4796E-05 375.5038556744226 63.831 0.61926 60.575 60.194 60.813 -3.2567 27 17 2 0 0 0 1.0158 1 11907 11907 6.2058 1.6769 1 1876400 29881 5590 20030 20038 29387 29387 -0.06720718139558812 MDEPGGHY 8 Unmodified _MDEPGGHY_ 0 0 0 L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|18|3|sense L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|18|3|sense L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|18|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76226806640625 2 453.176535 904.338517 0.27177 0.00012316 0.84394 0.00038245 1.1157 0.00050561 453.17680246684586 101.87 1.4518 97.547 97.152 98.604 -4.3208 69 41 2 0 0 0 8448 1 19482 19482 0.62683 0 1 2760000 29882 12018 20031 20039 29388 29388 -0.11747859727540799 MDEPGGHY 8 Unmodified _MDEPGGHY_ 0 0 0 L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|18|3|sense L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|18|3|sense L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|18|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7577819824219 2 453.176535 904.338517 0.41388 0.00018756 0.70932 0.00032145 1.1232 0.00050901 453.17679025911207 101.75 1.4784 97.729 97.18 98.659 -4.0212 68 42 2 0 0 0 8448 1 19559 19559 0.62683 0 1 2400600 29883 12018 20031 20039 29389 29389 -0.11747859727540799 MDFLYAPP 8 Unmodified _MDFLYAPP_ 0 0 0 tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1 tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1 tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74371337890625 2 477.225497 952.43644 0.44655 0.00021311 1.1435 0.00054569 1.59 0.0007588 477.2259945405239 29.161 0.97283 27.165 26.763 27.736 -1.9962 73 27 4 0 0 0 0.72861 1 4939 4939 10.183 1.5901 1 13038000 29884 26148 20032 20040 29390 29390 -0.04168051131568973 MDGPQLVR 8 Unmodified _MDGPQLVR_ 0 0 0 ENST00000175756.9_1_2:131131510-131131732:+|nuORF ENST00000175756.9_1_2:131131510-131131732:+|nuORF ENST00000175756.9_1_2:131131510-131131732:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23858642578125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 76.276 1 72.553 72.053 73.053 -3.7227 0 0 0 0.21486 1 14437 14437 12.532 2.3482 1 29885 8081 20033 20041 29391 29391 0.003732718485366604 MDHPMSMQP 9 Unmodified _MDHPMSMQP_ 0 0 0 nc|ENSG00000144642|Q6XE24-3|RBMS3;nc|ENSG00000144642|Q6XE24-4|RBMS3;nc|ENSG00000144642|Q6XE24-5|RBMS3;nc|ENSG00000144642|Q6XE24-2|RBMS3;ENSG00000144642|ENST00000383767|RBMS3 nc|ENSG00000144642|Q6XE24-3|RBMS3 nc|ENSG00000144642|Q6XE24-3|RBMS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 359.8135681152344 3 358.478612 1072.41401 0.19044 6.8268E-05 1.2918 0.00046308 1.4822 0.00053134 358.47989908054325 79.19 0.6908 79.19 78.854 79.545 0 71 19 5 0 0 0 0.5428 1 15405 15405 0.029283 0 1 6702000 29886 4564 20034 20042 29392 29392 -0.11930341863126159 MDKNTPVRY 9 Unmodified _MDKNTPVRY_ 0 0 0 EIF3M|p.K161Sfs*5|2|0.14|ENSG00000149100|chr11:32589584-32589584|A/-|frameshift_variant;ENSG00000149100|ENST00000531120|EIF3M EIF3M|p.K161Sfs*5|2|0.14|ENSG00000149100|chr11:32589584-32589584|A/-|frameshift_variant EIF3M|p.K161Sfs*5|2|0.14|ENSG00000149100|chr11:32589584-32589584|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.212646484375 3 375.190336 1122.54918 NaN NaN NaN NaN NaN NaN NaN 53.414 1 50.531 50.031 51.031 -2.8837 0 0 0 0.19657 1 10176 10176 4.897 3.6822 1 29887 932 20035 20043 29393 29393 -0.007194024055024784 MDPSCEVGMAY 11 Unmodified _MDPSCEVGMAY_ 0 0 0 ENSG00000166840|ENST00000532726|GLYATL1;ENST00000534119.1_1_11:58715222-58723497:+|nuORF;nc|ENSG00000166840|Q969I3-2|GLYATL1 ENSG00000166840|ENST00000532726|GLYATL1 ENSG00000166840|ENST00000532726|GLYATL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2960815429688 2 601.72996 1201.44537 0.39012 0.00023475 4.2995 0.0025871 4.6896 0.0028219 602.2342026134265 135.28 0.38127 135.28 135.09 135.47 0 15 10 2 0 0 0 0.83635 1 26805 26805 24.021 5.8856 1 3104400 29888 5752 20036 20044 29394 29394 -0.14729813619669585 MDRGFRRERR 10 Unmodified _MDRGFRRERR_ 0 0 0 REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2445373535156 3 460.245949 1377.71602 NaN NaN NaN NaN NaN NaN NaN 135.75 1 135.75 135.25 136.25 0 0 0 0 2.8426 1 26890 26890 0.043787 0.017581 1 + 29889 13953 20037 20045 29395 29395 0.04226883262731462 MDRGFRRERR 10 Unmodified _MDRGFRRERR_ 0 0 0 REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.244140625 3 460.245949 1377.71602 NaN NaN NaN NaN NaN NaN NaN 126.75 1 122.14 121.64 122.64 -4.6172 0 0 0 2.8426 1 24996 24996 0.043787 0 1 + 29890 13953 20037 20045 29396 29396 0.04226883262731462 MDRGFRRERR 10 Unmodified _MDRGFRRERR_ 0 0 0 REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2440185546875 3 460.245949 1377.71602 NaN NaN NaN NaN NaN NaN NaN 96.408 1 92.489 91.989 92.989 -3.9194 0 0 0 2.8426 1 18500 18500 0.13989 0 1 + 29891 13953 20037 20045 29397 29397 0.04226883262731462 MDRGFRRERR 10 Unmodified _MDRGFRRERR_ 0 0 0 REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24462890625 3 460.245949 1377.71602 NaN NaN NaN NaN NaN NaN NaN 131.44 1 126.67 126.17 127.17 -4.7725 0 0 0 2.8426 1 25301 25301 0.0013812 0 1 + 29892 13953 20037 20045 29398 29398 0.04226883262731462 MDRGFRRERR 10 Unmodified _MDRGFRRERR_ 0 0 0 REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2464904785156 3 460.245949 1377.71602 NaN NaN NaN NaN NaN NaN NaN 160.9 1 155.64 155.14 156.14 -5.2526 0 0 0 0.22588 1 31221 31221 3.0723 1.8574 1 + 29893 13953 20037 20045 29399 29399 0.04226883262731462 MDRGVGLTA 9 Unmodified _MDRGVGLTA_ 0 0 0 ENSG00000103021|ENST00000219299|CCDC113;CCDC113|p.D98N|1|0.42|ENSG00000103021|chr16:58254061-58254061|G/A|missense_variant ENSG00000103021|ENST00000219299|CCDC113 ENSG00000103021|ENST00000219299|CCDC113 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2362976074219 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 143.45 1 138.42 137.92 138.92 -5.0261 0 0 0 0.19649 1 27654 27654 0.12781 0.0049496 1 29894 2159 20038 20046 29400 29400 -0.0031903201409022586 MDRGWQFQEW 10 Unmodified _MDRGWQFQEW_ 0 0 0 ENST00000503791.5_1_13:28712996-28748432:+|nuORF ENST00000503791.5_1_13:28712996-28748432:+|nuORF ENST00000503791.5_1_13:28712996-28748432:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5357360839844 3 461.536395 1381.58736 NaN NaN NaN NaN NaN NaN NaN 157.37 1 157.37 156.87 157.87 0 0 0 0 2.8426 1 31584 31584 0 0 1 29895 10648 20039 20047 29401 29401 -0.08817516490830712 MDRINIVII 9 Unmodified _MDRINIVII_ 0 0 0 L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|33|2|sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|33|2|sense L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|33|2|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78955078125 2 543.820627 1085.6267 NaN NaN NaN NaN NaN NaN NaN 128.82 1 124.01 123.51 124.51 -4.817 0 0 0 0.22621 1 24729 24729 15.847 0.078963 1 29896 12065 20040 20048 29402 29402 0.08731235530672166 MDSRFYHEVER 11 Unmodified _MDSRFYHEVER_ 0 0 0 REV__COL6A6|p.P1092S|1|0.21|ENSG00000206384|chr3:130574252-130574252|C/T|missense_variant REV__COL6A6|p.P1092S|1|0.21|ENSG00000206384|chr3:130574252-130574252|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2655334472656 3 490.226109 1467.6565 NaN NaN NaN NaN NaN NaN NaN 126.19 1 121.59 121.09 122.09 -4.5984 0 0 0 0.22632 1 24880 24880 0.026206 0 1 + 29897 13497 20041 20049 29403 29403 -0.0586247726196234 MDSRFYHEVER 11 Unmodified _MDSRFYHEVER_ 0 0 0 REV__COL6A6|p.P1092S|1|0.21|ENSG00000206384|chr3:130574252-130574252|C/T|missense_variant REV__COL6A6|p.P1092S|1|0.21|ENSG00000206384|chr3:130574252-130574252|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2687072753906 3 490.226109 1467.6565 NaN NaN NaN NaN NaN NaN NaN 53.615 1 50.527 50.027 51.027 -3.0876 0 0 0 0.22632 1 9871 9871 0.172 0 1 + 29898 13497 20041 20049 29404 29404 -0.0586247726196234 MDSTFILLSY 10 Unmodified _MDSTFILLSY_ 0 0 0 ENSG00000167359|ENST00000380211|OR51I1 ENSG00000167359|ENST00000380211|OR51I1 ENSG00000167359|ENST00000380211|OR51I1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 595.1771240234375 2 595.294107 1188.57366 0.50739 0.00030205 -0.47328 -0.00028174 0.034108 2.0304E-05 595.2937621256582 34.735 0.37759 32.418 32.226 32.604 -2.3175 22 10 3 0 0 0 0.91149 1 6358 6358 0.40072 0 1 1414900 29899 5804 20042 20050 29405 29405 -0.01308187042627651 MEAARTAVL 9 Unmodified _MEAARTAVL_ 0 0 0 ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000561933.1_1_16:68344571-68344829:-|nuORF ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.767822265625 2 481.260402 960.506251 0.12451 5.9922E-05 0.32956 0.0001586 0.45407 0.00021853 481.26069385387984 89.389 0.62975 85.611 85.313 85.943 -3.7779 34 17 3 0 0 0 0.34411 1 17067 17067 29.082 5.9332 1 1859100 29900 2161 20043 20051 29406 29406 0.02441827537052177 MEAEASYY 8 Unmodified _MEAEASYY_ 0 0 0 TTC29|p.Y300Vfs*20|1|0.42|ENSG00000137473|chr4:146833882-146833885|AGTA/-|frameshift_variant;ENSG00000137473|ENST00000325106|TTC29;nc|ENSG00000137473|Q8NA56-2|TTC29 TTC29|p.Y300Vfs*20|1|0.42|ENSG00000137473|chr4:146833882-146833885|AGTA/-|frameshift_variant TTC29|p.Y300Vfs*20|1|0.42|ENSG00000137473|chr4:146833882-146833885|AGTA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78533935546875 2 482.191851 962.369149 NaN NaN NaN NaN NaN NaN NaN 67.068 1 63.741 63.241 64.241 -3.3268 0 0 0 0.21486 1 12641 12641 10.183 0 1 29901 4086 20044 20052 29407 29407 -0.11354126133164755 MEAFTASSL 9 Unmodified _MEAFTASSL_ 0 0 0 nc|ENSG00000184058|O43435-2|TBX1;nc|ENSG00000184058|O43435|TBX1;nc|ENSG00000184058|O43435-3|TBX1 nc|ENSG00000184058|O43435-2|TBX1 nc|ENSG00000184058|O43435-2|TBX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72344970703125 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 151.6 1 146.43 145.93 146.93 -5.1759 0 0 0 0.20155 1 29382 29382 23.148 6.2061 1 29902 12508 20045 20053 29408 29408 -0.04741560345121343 MEAFVSISL 9 Unmodified _MEAFVSISL_ 0 0 0 REV__tr|U7T474|U7T474_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00282PE=4SV=1 REV__tr|U7T474|U7T474_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00282PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.9990539550781 3 332.840533 995.499769 -0.47771 -0.000159 -1.3033 -0.00043379 -1.781 -0.00059279 332.84013853695285 41.119 0.80664 38.485 38.007 38.813 -2.6348 28 22 2 0 0 0 0.88054 1 7711 7711 4.5289 3.4574 1 1363900 + 29903 25385 20046 20054 29409 29409 0.00183889585707675 MEAGSGPPGGP 11 Unmodified _MEAGSGPPGGP_ 0 0 0 IQSEC2|p.E127Ifs*81|1|0.27|ENSG00000124313|chrX:53320746-53320747|-/CGATT|frameshift_variant;IQSEC2|p.Y269Tfs*3|1|0.62|ENSG00000124313|chrX:53255995-53255995|G/-|frameshift_variant;IQSEC2|p.Q1376Sfs*21|1|0.15|ENSG00000124313|chrX:53234560-53234560|G/-|frameshift_variant;IQSEC2|p.A1347Lfs*50|1|0.45|ENSG00000124313|chrX:53234647-53234647|C/-|frameshift_variant;ENSG00000124313|ENST00000642864|IQSEC2 IQSEC2|p.E127Ifs*81|1|0.27|ENSG00000124313|chrX:53320746-53320747|-/CGATT|frameshift_variant IQSEC2|p.E127Ifs*81|1|0.27|ENSG00000124313|chrX:53320746-53320747|-/CGATT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.741943359375 2 478.710742 955.406931 NaN NaN NaN NaN NaN NaN NaN 20.527 1 18.806 18.306 19.306 -1.7211 0 0 0 0.22943 1 3163 3163 8.7454 0.83525 1 29904 3310 20047 20055 29410 29410 -0.07255615147687422 MEAHRTAN 8 Unmodified _MEAHRTAN_ 0 0 0 REV__nc|ENSG00000189007|Q7Z6V5-2|ADAT2 REV__nc|ENSG00000189007|Q7Z6V5-2|ADAT2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2584533691406 2 465.216526 928.418499 NaN NaN NaN NaN NaN NaN NaN 147.89 1 143.18 142.68 143.68 -4.7095 0 0 0 0.21486 1 29359 29359 12.532 0 1 + 29905 19185 20048 20056 29411 29411 -0.048573733336979785 MEAPAAGLF 9 Oxidation (M) _M(Oxidation (M))EAPAAGLF_ M(1)EAPAAGLF M(48)EAPAAGLF 0 0 1 ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53533935546875 2 461.720578 921.426604 0.18567 8.5726E-05 0.07475 3.4514E-05 0.26042 0.00012024 461.72060276221345 117 1.2621 117 116.36 117.62 0 60 35 2 0 0 0 0.10777 1 23014 23014 48.346 7.8973 1 6756800 29906 5479 20049 20057 29412 29412 85 -0.037252391369293036 MEAPAAGLF 9 Oxidation (M) _M(Oxidation (M))EAPAAGLF_ 0 0 1 ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.720578 921.426604 0.15932 7.3559E-05 0.13576 6.2681E-05 0.29507 0.00013624 461.72054434016326 121.59 1.2134 117.05 116.38 117.6 -4.5476 0.065513 0.0001285 NaN 48.346 73 33 3 NaN NaN NaN NaN 0 NaN NaN 0 7254800 29907 5479 20049 20057 85 -0.037252391369293036 MEAPAAGLF 9 Oxidation (M) _M(Oxidation (M))EAPAAGLF_ 0 0 1 ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.720578 921.426604 0.33267 0.0001536 -0.0052424 -2.4205E-06 0.32742 0.00015118 461.7205276484178 121.43 1.2647 116.9 116.32 117.58 -4.5305 -0.078267 -1.6998E-06 NaN 48.346 78 34 3 NaN NaN NaN NaN 0 NaN NaN 0 6466300 29908 5479 20049 20057 85 -0.037252391369293036 MEAPAAGLF 9 Unmodified _MEAPAAGLF_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76739501953125 2 453.723121 905.431689 0.070799 3.2123E-05 0.10285 4.6665E-05 0.17365 7.8788E-05 453.72308655727164 148.14 0.88464 142.98 142.58 143.47 -5.1558 57 24 3 0 0 0 0.095051 1 28658 28658 57.471 1.423 1 13038000 29909 5479 20049 20058 29413 29413 -0.024809352743204727 MEAPAAGLF 9 Unmodified _MEAPAAGLF_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 453.723121 905.431689 0.25375 0.00011513 -0.0075993 -3.448E-06 0.24615 0.00011169 453.72305542824455 142.8 0.97461 142.8 142.27 143.24 0 -0.12137 -2.7013E-05 NaN 57.471 47 27 2 NaN NaN NaN NaN 0 NaN NaN 0 10475000 29910 5479 20049 20058 -0.024809352743204727 MEAPAAGLF 9 Unmodified _MEAPAAGLF_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.723121 905.431689 -0.01391 -6.3111E-06 0.17058 7.7396E-05 0.15667 7.1085E-05 453.7231427686108 147.68 0.8139 142.97 142.63 143.44 -4.7095 0.051686 0.00013468 NaN 57.471 62 23 3 NaN NaN NaN NaN 0 NaN NaN 0 14709000 29911 5479 20049 20058 -0.024809352743204727 MEAPAAGLF 9 Unmodified _MEAPAAGLF_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.723121 905.431689 0.29299 0.00013294 -0.18545 -8.4143E-05 0.10754 4.8795E-05 453.7230213760503 147.98 0.87402 142.92 142.53 143.4 -5.0595 0.004393 -0.0001884 NaN 57.471 57 24 4 NaN NaN NaN NaN 0 NaN NaN 0 9815700 29912 5479 20049 20058 -0.024809352743204727 MEAQKSAVP 9 Unmodified _MEAQKSAVP_ 0 0 0 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2364807128906 2 480.744585 959.474617 0.037848 1.8195E-05 -0.24304 -0.00011684 -0.20519 -9.8643E-05 480.74454772189296 27.531 0.8916 27.531 27.15 28.042 0 54 25 3 0 0 0 0.15889 5 4842 4842;4844;4852;4899;4943 36.506 22.055 1 1981600 29913 7507 20050 20059 29414;29415;29416;29417;29418 29414 -0.00674165216878464 MEAQKSAVP 9 Unmodified _MEAQKSAVP_ 0 0 0 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24591064453125 2 480.744585 959.474617 0.65301 0.00031393 -0.60265 -0.00028972 0.050355 2.4208E-05 480.7443362834697 29.368 0.77619 27.412 27.12 27.896 -1.9561 37 21 2 0 0 0 0.12612 3 5283 5281;5283;5325 47.594 21.671 1 1895000 29914 7507 20050 20059 29419;29420;29421 29420 -0.00674165216878464 MEAQKSAVP 9 Unmodified _MEAQKSAVP_ 0 0 0 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2547302246094 2 480.744585 959.474617 0.35675 0.00017151 -0.48306 -0.00023223 -0.12631 -6.0721E-05 480.7444781888456 29.336 0.87691 27.443 26.979 27.856 -1.8928 55 24 3 0 0 0 0.12612 6 4984 4936;4961;4963;4984;5005;5008 47.594 15.289 1 2215900 29915 7507 20050 20059 29422;29423;29424;29425;29426;29427 29425 -0.00674165216878464 MEAQKSAVP 9 Unmodified _MEAQKSAVP_ 0 0 0 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 ENSG00000198841|ENST00000371614|KTI12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2370910644531 2 480.744585 959.474617 0.42298 0.00020334 -0.35774 -0.00017198 0.065238 3.1363E-05 480.74441509679775 29.439 0.8314 27.365 27 27.831 -2.0743 43 23 2 0 0 0 0.21532 3 4980 4956;4980;4998 36.506 11.107 1 1730200 29916 7507 20050 20059 29428;29429;29430 29429 -0.00674165216878464 MEAVCLICDP 10 Unmodified _MEAVCLICDP_ 0 0 0 PSG9|p.R166C|1|0.36|ENSG00000183668|chr19:43262073-43262073|G/A|missense_variant PSG9|p.R166C|1|0.36|ENSG00000183668|chr19:43262073-43262073|G/A|missense_variant PSG9|p.R166C|1|0.36|ENSG00000183668|chr19:43262073-43262073|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7783203125 2 547.239963 1092.46537 0.3315 0.00018141 2.5327 0.001386 2.8642 0.0015674 547.2417239246593 34.992 0.37679 34.992 34.791 35.168 0 18 10 2 0 0 0 0.59264 1 6428 6428 36.127 15.256 1 1762000 29917 12838 20051 20060 29431 29431 -0.07716017889060822 MECCCCCCEE 10 Unmodified _MECCCCCCEE_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 578.2406005859375 2 578.124244 1154.23394 NaN NaN NaN NaN NaN NaN NaN 50.071 1 47.19 46.69 47.69 -2.8811 0 0 0 0.22588 1 9495 9495 0.45834 0.45834 1 29918 6095 20052 20061 29432 29432 -0.33701216240615395 MECCCCCCEEC 11 Unmodified _MECCCCCCEEC_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 629.8706665039062 2 629.628836 1257.24312 NaN NaN NaN NaN NaN NaN NaN 170.4 1 165.61 165.11 166.11 -4.7898 0 0 0 0.23698 1 34583 34583 0 0 1 29919 6095 20053 20062 29433 29433 -0.375211909465861 MEDEVVRFA 9 Unmodified _MEDEVVRFA_ 0 0 0 ENST00000521086.6_1_8:54915649-54934685:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1 ENST00000521086.6_1_8:54915649-54934685:-|nuORF ENST00000521086.6_1_8:54915649-54934685:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7719116210938 2 548.260599 1094.50665 0.48987 0.00026858 0.28022 0.00015363 0.77009 0.00042221 548.2606631098635 98.605 0.73163 98.605 98.157 98.889 0 46 20 4 0 0 0 0.13841 1 19280 19280 63.961 34.879 1 6318000 29920 7124 20054 20063 29434 29434 -0.036827975337246244 MEDEVVRFA 9 Unmodified _MEDEVVRFA_ 0 0 0 ENST00000521086.6_1_8:54915649-54934685:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1 ENST00000521086.6_1_8:54915649-54934685:-|nuORF ENST00000521086.6_1_8:54915649-54934685:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7720336914062 2 548.260599 1094.50665 0.13668 7.4938E-05 0.65884 0.00036122 0.79552 0.00043615 548.2609791663754 102.74 0.56847 98.549 98.272 98.841 -4.1861 26 15 2 0 0 0 0.50308 1 20240 20240 31.268 2.7815 1 2603400 29921 7124 20054 20063 29435 29435 -0.036827975337246244 MEDEVVRFA 9 Unmodified _MEDEVVRFA_ 0 0 0 ENST00000521086.6_1_8:54915649-54934685:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1 ENST00000521086.6_1_8:54915649-54934685:-|nuORF ENST00000521086.6_1_8:54915649-54934685:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7935791015625 2 548.260599 1094.50665 0.29903 0.00016395 0.11284 6.1864E-05 0.41187 0.00022581 548.2606990091311 102.83 0.66555 98.505 98.288 98.954 -4.3208 28 18 2 0 0 0 0.065291 1 19694 19694 63.961 27.833 1 2368600 29922 7124 20054 20063 29436 29436 -0.036827975337246244 MEDEVVRFA 9 Unmodified _MEDEVVRFA_ 0 0 0 ENST00000521086.6_1_8:54915649-54934685:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1 ENST00000521086.6_1_8:54915649-54934685:-|nuORF ENST00000521086.6_1_8:54915649-54934685:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.771728515625 2 548.260599 1094.50665 0.60933 0.00033407 -0.7942 -0.00043543 -0.18487 -0.00010136 548.2604000170993 102.54 0.88097 98.521 98.184 99.065 -4.0212 34 24 2 0 0 0 0.10265 1 19707 19707 72.968 36.841 1 2263300 29923 7124 20054 20063 29437 29437 -0.036827975337246244 MEDHRDED 8 Unmodified _MEDHRDED_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-6|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-6|NSFL1C nc|ENSG00000088833|Q9UNZ2-6|NSFL1C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7017822265625 2 523.69582 1045.37709 NaN NaN NaN NaN NaN NaN NaN 147.18 1 147.18 146.68 147.68 0 0 0 0 0.21486 1 29439 29439 5.2307 0.90143 1 29924 1736 20055 20064 29438 29438 -0.14378598883672566 MEDHRDED 8 Unmodified _MEDHRDED_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-6|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-6|NSFL1C nc|ENSG00000088833|Q9UNZ2-6|NSFL1C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.68505859375 2 523.69582 1045.37709 NaN NaN NaN NaN NaN NaN NaN 147.21 1 147.21 146.71 147.71 0 0 0 0 0.2343 1 29446 29446 0.063987 0.034705 1 29925 1736 20055 20064 29439 29439 -0.14378598883672566 MEDHRDED 8 Unmodified _MEDHRDED_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-6|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-6|NSFL1C nc|ENSG00000088833|Q9UNZ2-6|NSFL1C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6962280273438 2 523.69582 1045.37709 NaN NaN NaN NaN NaN NaN NaN 152.67 1 147.45 146.95 147.95 -5.2147 0 0 0 0.21486 1 29588 29588 5.2307 0.90143 1 29926 1736 20055 20064 29440 29440 -0.14378598883672566 MEDIKILIA 9 Unmodified _MEDIKILIA_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6931762695312 2 523.301736 1044.58892 0.19178 0.00010036 -0.10233 -5.355E-05 0.089449 4.6809E-05 523.3017147343348 146.84 1.0465 146.84 146.35 147.4 0 93 29 4 0 0 0 0.068106 1 29410 29410 74.2 30.427 1 94291000 29927 2000 20056 20065 29441 29441 0.06840724545213561 MEDIKILIA 9 Unmodified _MEDIKILIA_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6843872070312 2 523.301736 1044.58892 -0.072332 -3.7852E-05 0.17156 8.9778E-05 0.099228 5.1926E-05 523.3018349749943 151.23 1.6246 146.48 145.76 147.39 -4.7523 134 45 4 0 0 0 0.15889 1 30182 30182 22.736 19.149 1 157080000 29928 2000 20056 20065 29442 29442 0.06840724545213561 MEDIKILIA 9 Unmodified _MEDIKILIA_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.680419921875 2 523.301736 1044.58892 -0.45887 -0.00024013 0.021546 1.1275E-05 -0.43732 -0.00022885 523.3013931385253 152.47 0.28752 147.23 147.18 147.46 -5.2365 11 7 2 0 0 0 0.48707 1 29563 29563 20.415 6.0092 1 2900400 29929 2000 20056 20065 29443 29443 0.06840724545213561 MEDIKILIA 9 Unmodified _MEDIKILIA_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6970825195312 2 523.301736 1044.58892 -0.44604 -0.00023341 0.41816 0.00021882 -0.027879 -1.4589E-05 523.3020275212945 151.81 1.1352 146.57 146.04 147.18 -5.2365 116 31 5 0 0 0 0.029993 1 29424 29424 96.367 48.021 1 141740000 29930 2000 20056 20065 29444 29444 0.06840724545213561 MEDIKILIA 9 Unmodified _MEDIKILIA_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6849975585938 2 523.301736 1044.58892 0.41798 0.00021873 -0.52565 -0.00027507 -0.10766 -5.634E-05 523.3015371919232 151.68 1.4067 146.5 145.89 147.3 -5.1759 137 39 6 0 0 0 0.065852 4 29478 29478;29481;29508;29511 67.187 52.576 1 102290000 29931 2000 20056 20065 29445;29446;29447;29448 29445 0.06840724545213561 MEDLIHEIY 9 Oxidation (M) _M(Oxidation (M))EDLIHEIY_ M(1)EDLIHEIY M(120)EDLIHEIY 0 0 1 ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENST00000481157.1_1_12:65261855-65261975:-|nuORF;ENSG00000147604|ENST00000352983|RPL7 ENST00000461513.1_1_17:49579856-49580498:-|nuORF ENST00000461513.1_1_17:49579856-49580498:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2750244140625 2 589.773539 1177.53253 0.34293 0.00020225 -0.2595 -0.00015305 0.083425 4.9202E-05 589.7734717350238 124.51 1.0574 124.51 124.06 125.11 0 107 29 5 0 0 0 0.00014526 4 24537 24487;24537;24594;24637 123.45 81.611 1 133870000 29932 10073 20057 20066 29449;29450;29451;29452 29450 114 -0.049139480821168036 MEDLIHEIY 9 Oxidation (M) _M(Oxidation (M))EDLIHEIY_ M(1)EDLIHEIY M(130)EDLIHEIY 0 0 1 ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENST00000481157.1_1_12:65261855-65261975:-|nuORF;ENSG00000147604|ENST00000352983|RPL7 ENST00000461513.1_1_17:49579856-49580498:-|nuORF ENST00000461513.1_1_17:49579856-49580498:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.275146484375 2 589.773539 1177.53253 0.47858 0.00028225 -0.37665 -0.00022214 0.10193 6.0116E-05 589.7734025432322 129.09 0.99915 124.46 123.98 124.98 -4.6292 103 28 5 0 0 0 3.738E-05 5 25440 25383;25394;25440;25487;25527 131.27 85.568 1 68449000 29933 10073 20057 20066 29453;29454;29455;29456;29457 29455 114 -0.049139480821168036 MEDLIHEIY 9 Oxidation (M) _M(Oxidation (M))EDLIHEIY_ M(1)EDLIHEIY M(130)EDLIHEIY 0 0 1 ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENST00000481157.1_1_12:65261855-65261975:-|nuORF;ENSG00000147604|ENST00000352983|RPL7 ENST00000461513.1_1_17:49579856-49580498:-|nuORF ENST00000461513.1_1_17:49579856-49580498:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.275146484375 2 589.773539 1177.53253 0.49722 0.00029325 -0.38656 -0.00022798 0.11066 6.5266E-05 589.7733868743758 129.3 1.3341 124.48 123.95 125.28 -4.817 101 37 4 0 0 0 3.738E-05 7 24820 24758;24766;24771;24820;24873;24917;24928 131.27 85.568 1 52441000 29934 10073 20057 20066 29458;29459;29460;29461;29462;29463;29464 29461 114 -0.049139480821168036 MEDLIHEIY 9 Oxidation (M) _M(Oxidation (M))EDLIHEIY_ M(1)EDLIHEIY M(140)EDLIHEIY 0 0 1 ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENST00000481157.1_1_12:65261855-65261975:-|nuORF;ENSG00000147604|ENST00000352983|RPL7 ENST00000461513.1_1_17:49579856-49580498:-|nuORF ENST00000461513.1_1_17:49579856-49580498:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2752075195312 2 589.773539 1177.53253 0.17267 0.00010184 -0.084836 -5.0034E-05 0.087838 5.1804E-05 589.773554307469 129.27 1.1296 124.53 123.94 125.07 -4.7408 98 31 4 0 0 0 2.4497E-07 7 24850 24782;24801;24850;24894;24915;24918;24953 144.35 98.651 1 79782000 29935 10073 20057 20066 29465;29466;29467;29468;29469;29470;29471 29467 114 -0.049139480821168036 MEEDENKHTA 10 Unmodified _MEEDENKHTA_ 0 0 0 nc|ENSG00000138709|Q659C4-2|LARP1B;ENSG00000138709|ENST00000326639|LARP1B;nc|ENSG00000138709|Q659C4-4|LARP1B;LARP1B|p.M753Cfs*21|1|0.42|ENSG00000138709|chr4:128200607-128200607|A/-|frameshift_variant;nc|ENSG00000138709|Q659C4-9|LARP1B nc|ENSG00000138709|Q659C4-2|LARP1B nc|ENSG00000138709|Q659C4-2|LARP1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2800903320312 2 602.25096 1202.48737 NaN NaN NaN NaN NaN NaN NaN 95.868 1 95.868 95.368 96.368 0 0 0 0 0.22576 1 18778 18778 14.838 1.7958 1 29936 4204 20058 20067 29472 29472 -0.10577798615304346 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.27734375 2 602.27678 1202.53901 0.53321 0.00032114 0.17615 0.00010609 0.70937 0.00042724 602.2769164718853 51.272 1.3826 51.272 50.337 51.719 0 60 39 2 0 0 0 0.05838 3 9675 9632;9675;9724 67.838 48.581 1 3993500 29937 6488 20059 20068 29473;29474;29475 29474 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 402.8558654785156 3 401.853612 1202.53901 0.11382 4.5741E-05 -0.32918 -0.00013228 -0.21535 -8.6539E-05 401.85348946336757 51.281 2.0511 51.281 50.13 52.182 0 155 58 4 0 0 0 0.45972 1 9738 9738 8.1555 1.5252 1 11302000 29938 6488 20059 20068 29476 29476 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.27685546875 2 602.27678 1202.53901 0.78728 0.00047416 -0.23097 -0.00013911 0.55631 0.00033506 602.2767006906394 54.225 1.3516 51.341 50.52 51.872 -2.8837 45 38 2 0 0 0 0.043105 5 10339 10248;10291;10339;10392;10446 74.2 56.053 1 5398700 29939 6488 20059 20068 29477;29478;29479;29480;29481 29479 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2767333984375 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 54.929 1 52.046 51.546 52.546 -2.8837 0 0 0 0.2032 1 10495 10495 22.658 3.4011 1 29940 6488 20059 20068 29482 29482 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2763061523438 2 602.27678 1202.53901 0.40457 0.00024367 -0.29856 -0.00017982 0.10601 6.3846E-05 602.2768207749741 54.017 0.38084 50.882 50.559 50.94 -3.1352 13 10 2 0 0 0 0.46796 2 9959 9892;9959 21.59 7.6841 1 1274700 29941 6488 20059 20068 29483;29484 29484 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2769165039062 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 54.349 1 51.213 50.713 51.713 -3.1352 0 0 0 0.039841 1 10023 10023 57.249 36.835 1 29942 6488 20059 20068 29485 29485 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2916259765625 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 54.444 1 51.309 50.809 51.809 -3.1352 0 0 0 0.0050348 1 10044 10044 74.2 53.746 1 29943 6488 20059 20068 29486 29486 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2772216796875 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 54.557 1 51.421 50.921 51.921 -3.1352 0 0 0 0.00035177 1 10068 10068 83.429 51.123 1 29944 6488 20059 20068 29487 29487 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2778930664062 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 54.794 1 51.659 51.159 52.159 -3.1352 0 0 0 0.085095 1 10120 10120 43.982 29.025 1 29945 6488 20059 20068 29488 29488 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2774658203125 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 55.076 1 51.941 51.441 52.441 -3.1352 0 0 0 0.18247 1 10171 10171 26.021 7.8744 1 29946 6488 20059 20068 29489 29489 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.277099609375 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 55.286 1 52.151 51.651 52.651 -3.1352 0 0 0 0.1736 1 10214 10214 27.223 3.2027 1 29947 6488 20059 20068 29490 29490 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2782592773438 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 53.947 1 50.852 50.352 51.352 -3.0954 0 0 0 0.18489 1 9972 9972 17.113 10.483 1 29948 6488 20059 20068 29491 29491 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2778930664062 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 54.156 1 51.018 50.518 51.518 -3.1377 0 0 0 0.03591 1 10014 10014 59.368 34.377 1 29949 6488 20059 20068 29492 29492 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2772216796875 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 54.381 1 51.243 50.743 51.743 -3.1377 0 0 0 0.051762 1 10062 10062 51.415 27.395 1 29950 6488 20059 20068 29493 29493 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.277099609375 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 54.615 1 51.477 50.977 51.977 -3.1377 0 0 0 0.024584 1 10113 10113 65.474 32.688 1 29951 6488 20059 20068 29494 29494 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2772216796875 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 54.833 1 51.696 51.196 52.196 -3.1377 0 0 0 0.10686 1 10160 10160 37.075 11.675 1 29952 6488 20059 20068 29495 29495 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2785034179688 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 55.394 1 52.256 51.756 52.756 -3.1377 0 0 0 0.098577 1 10281 10281 38.615 14.594 1 29953 6488 20059 20068 29496 29496 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 401.853612 1202.53901 0.11382 4.5741E-05 -0.32918 -0.00013228 -0.21535 -8.6539E-05 401.85348946336757 51.281 2.0511 51.281 50.13 52.182 0 -0.16177 -0.00036878 NaN 8.1555 155 58 4 NaN NaN NaN NaN 0 NaN NaN 0 11302000 29954 6488 20059 20068 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 401.853612 1202.53901 -0.41675 -0.00016747 0.13178 5.2954E-05 -0.28498 -0.00011452 401.85371535446075 54.368 1.9662 51.485 50.35 52.316 -2.8837 0.042159 0.00018693 NaN 8.1555 115 56 3 NaN NaN NaN NaN 0 NaN NaN 0 18167000 29955 6488 20059 20068 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 401.853612 1202.53901 0.044096 1.772E-05 -0.24062 -9.6695E-05 -0.19653 -7.8975E-05 401.85351407291876 54.685 2.2383 51.55 50.417 52.655 -3.1352 0.10724 -0.00026202 NaN 8.1555 138 63 3 NaN NaN NaN NaN 0 NaN NaN 0 16810000 29956 6488 20059 20068 -0.054160101307388686 MEEEYRHIP 9 Unmodified _MEEEYRHIP_ 0 0 0 ENST00000430145.3_1_19:49166463-49183997:+|nuORF;ENSG00000176920|ENST00000425340|FUT2 ENST00000430145.3_1_19:49166463-49183997:+|nuORF ENST00000430145.3_1_19:49166463-49183997:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 401.853612 1202.53901 -0.54987 -0.00022097 0.38321 0.00015399 -0.16666 -6.6974E-05 401.85374308120765 54.593 2.3308 51.455 50.435 52.766 -3.1377 0.012361 0.00049005 NaN 8.1555 133 66 3 NaN NaN NaN NaN 0 NaN NaN 0 11463000 29957 6488 20059 20068 -0.054160101307388686 MEEKNLSI 8 Unmodified _MEEKNLSI_ 0 0 0 REV__nc|ENSG00000167995|O76090-3|BEST1 REV__nc|ENSG00000167995|O76090-3|BEST1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7691955566406 2 482.244418 962.474282 0.066682 3.2157E-05 0.46925 0.00022629 0.53593 0.00025845 482.2448199537555 60.572 0.53222 57.349 57.029 57.561 -3.2237 23 14 2 0 0 0 0.78482 1 11329 11329 19.257 0 1 999860 + 29958 24153 20060 20069 29497 29497 -0.008455849367237533 MEELEESRQ 9 Unmodified _MEELEESRQ_ 0 0 0 ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000136531|Q99250-2|SCN2A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;SCN2A|p.C725Y|1|0.4|ENSG00000136531|chr2:165331354-165331354|G/A|missense_variant;SCN3A|p.N1922Ifs*19|1|0.09|ENSG00000153253|chr2:165090388-165090388|T/-|frameshift_variant;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant;SCN3A|p.T1958Qfs*16|1|0.28|ENSG00000153253|chr2:165090281-165090281|T/-|frameshift_variant;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A ENSG00000136531|ENST00000375437|SCN2A;SCN3A|p.N1922Ifs*19|1|0.09|ENSG00000153253|chr2:165090388-165090388|T/-|frameshift_variant ENSG00000136531|ENST00000375437|SCN2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.330078125 2 575.755878 1149.4972 0.7032 0.00040487 -1.3142 -0.00075668 -0.61104 -0.00035181 576.2564299983262 121.13 0.21706 116.44 116.24 116.46 -4.6873 7 5 2 0 0 0 0.6329 1 23232 23232 10.824 2.9138 1 1480400 29959 4017;4965 20061 20070 29498 29498 -0.07156610609922609 MEELKQEWS 9 Unmodified _MEELKQEWS_ 0 0 0 REV__ENSG00000105401|ENST00000222005|CDC37 REV__ENSG00000105401|ENST00000222005|CDC37 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2698364257812 2 590.271164 1178.52777 NaN NaN NaN NaN NaN NaN NaN 80.202 1 76.397 75.897 76.897 -3.8048 0 0 0 0.1599 1 15219 15219 29.082 1.8583 1 + 29960 14988 20062 20071 29499 29499 -0.054348322248642944 MEEMYKKAHAA 11 Unmodified _MEEMYKKAHAA_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000438138.1_1_10:71539408-71539444:+|nuORF;ENST00000457507.1_1_1:99473841-99474009:+|nuORF;ENST00000465511.1_1_11:118431647-118432142:+|nuORF;ENST00000434805.1_1_1:35816564-35817152:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2344970703125 3 436.874019 1307.60023 0.14354 6.271E-05 -0.15308 -6.6878E-05 -0.0095398 -4.1677E-06 436.87395846930394 20.581 0.60059 20.581 20.351 20.951 0 48 16 5 0 0 0 0.19617 1 3400 3400 51.765 34.716 1 14589000 29961 3222 20063 20072 29500 29500 -0.0412682142293761 MEEMYKKAHAA 11 Unmodified _MEEMYKKAHAA_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000438138.1_1_10:71539408-71539444:+|nuORF;ENST00000457507.1_1_1:99473841-99474009:+|nuORF;ENST00000465511.1_1_11:118431647-118432142:+|nuORF;ENST00000434805.1_1_1:35816564-35817152:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2207336425781 3 436.874019 1307.60023 0.47384 0.00020701 -0.5837 -0.000255 -0.10986 -4.7995E-05 436.87382093202683 22.226 0.65491 20.752 20.557 21.211 -1.4742 50 18 4 0 0 0 0.35619 1 3786 3786 51.765 28.749 1 16755000 29962 3222 20063 20072 29501 29501 -0.0412682142293761 MEEMYKKAHAA 11 Unmodified _MEEMYKKAHAA_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000438138.1_1_10:71539408-71539444:+|nuORF;ENST00000457507.1_1_1:99473841-99474009:+|nuORF;ENST00000465511.1_1_11:118431647-118432142:+|nuORF;ENST00000434805.1_1_1:35816564-35817152:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22216796875 3 436.874019 1307.60023 -0.73689 -0.00032193 0.47074 0.00020565 -0.26615 -0.00011628 436.8743440785772 22.5 0.66262 20.711 20.429 21.091 -1.7886 50 18 4 0 0 0 0.27639 1 3583 3583 46.475 26.488 1 12564000 29963 3222 20063 20072 29502 29502 -0.0412682142293761 MEEMYKKAHAA 11 Unmodified _MEEMYKKAHAA_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000438138.1_1_10:71539408-71539444:+|nuORF;ENST00000457507.1_1_1:99473841-99474009:+|nuORF;ENST00000465511.1_1_11:118431647-118432142:+|nuORF;ENST00000434805.1_1_1:35816564-35817152:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 436.874019 1307.60023 -0.17497 -7.6441E-05 -0.19407 -8.4786E-05 -0.36905 -0.00016123 436.87409747833465 22.132 0.45167 20.678 20.458 20.91 -1.4535 -0.0023544 -0.00010305 NaN 51.765 47 12 5 NaN NaN NaN NaN 0 NaN NaN 0 19463000 29964 3222 20063 20072 -0.0412682142293761 MEEQVTKAEA 10 Oxidation (M) _M(Oxidation (M))EEQVTKAEA_ M(1)EEQVTKAEA M(130)EEQVTKAEA 0 0 1 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3322143554688 2 576.266078 1150.5176 0.23314 0.00013435 -0.18821 -0.00010846 0.04493 2.5892E-05 576.265997308365 17.802 0.39813 17.802 17.625 18.023 0 25 10 3 0 0 0 0.00011809 1 2836 2836 128.87 68.796 1 4811900 29965 7045 20064 20073 29503 29503 97 -0.051634399501153894 MEEQVTKAEA 10 Oxidation (M) _M(Oxidation (M))EEQVTKAEA_ M(1)EEQVTKAEA M(150)EEQVTKAEA 0 0 1 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.330322265625 2 576.266078 1150.5176 0.086583 4.9895E-05 0.25329 0.00014596 0.33987 0.00019586 576.2660398663297 19.135 0.52937 17.738 17.572 18.102 -1.3966 38 14 5 0 0 0 0.00014077 1 3144 3144 153.7 102.07 1 3123000 29966 7045 20064 20073 29504 29504 97 -0.051634399501153894 MEEQVTKAEA 10 Oxidation (M) _M(Oxidation (M))EEQVTKAEA_ M(1)EEQVTKAEA M(130)EEQVTKAEA 0 0 1 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3303833007812 2 576.266078 1150.5176 -0.22811 -0.00013145 0.49721 0.00028652 0.26909 0.00015507 576.2663175625585 19.061 0.46095 17.736 17.541 18.002 -1.3251 27 12 3 0 0 0 0.00014077 1 2884 2884 132.57 84.818 1 2640500 29967 7045 20064 20073 29505 29505 97 -0.051634399501153894 MEERPSTPP 9 Unmodified _MEERPSTPP_ 0 0 0 REV__ENSG00000108021|ENST00000695737|TASOR2 REV__ENSG00000108021|ENST00000695737|TASOR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2820434570312 2 522.244949 1042.47534 NaN NaN NaN NaN NaN NaN NaN 33.712 1 31.496 30.996 31.996 -2.2158 0 0 0 0.22193 1 5884 5884 17.113 2.2746 1 + 29968 15106 20065 20074 29506 29506 -0.044193705678253536 MEEVSGQGL 9 Unmodified _MEEVSGQGL_ 0 0 0 ENSG00000130307|ENST00000252597|USHBP1;nc|ENSG00000130307|Q8N6Y0-2|USHBP1;USHBP1|p.G112Lfs*16|1|0.25|ENSG00000130307|chr19:17262861-17262862|-/GG|frameshift_variant ENSG00000130307|ENST00000252597|USHBP1 ENSG00000130307|ENST00000252597|USHBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.11749267578125 3 317.148025 948.422247 NaN NaN NaN NaN NaN NaN NaN 98.478 1 98.478 97.978 98.978 0 0 0 0 0.23508 1 19303 19303 2.7352 0.64919 1 29969 3600 20066 20075 29507 29507 -0.05402748350491038 MEEVSGQGL 9 Unmodified _MEEVSGQGL_ 0 0 0 ENSG00000130307|ENST00000252597|USHBP1;nc|ENSG00000130307|Q8N6Y0-2|USHBP1;USHBP1|p.G112Lfs*16|1|0.25|ENSG00000130307|chr19:17262861-17262862|-/GG|frameshift_variant ENSG00000130307|ENST00000252597|USHBP1 ENSG00000130307|ENST00000252597|USHBP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1585388183594 3 317.148025 948.422247 NaN NaN NaN NaN NaN NaN NaN 101.87 1 97.684 97.184 98.184 -4.1861 0 0 0 0.23508 1 20018 20018 2.7352 0 1 29970 3600 20066 20075 29508 29508 -0.05402748350491038 MEEVSGQGL 9 Unmodified _MEEVSGQGL_ 0 0 0 ENSG00000130307|ENST00000252597|USHBP1;nc|ENSG00000130307|Q8N6Y0-2|USHBP1;USHBP1|p.G112Lfs*16|1|0.25|ENSG00000130307|chr19:17262861-17262862|-/GG|frameshift_variant ENSG00000130307|ENST00000252597|USHBP1 ENSG00000130307|ENST00000252597|USHBP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1484069824219 3 317.148025 948.422247 NaN NaN NaN NaN NaN NaN NaN 102.21 1 97.885 97.385 98.385 -4.3208 0 0 0 0.23508 1 19567 19567 2.7352 0 1 29971 3600 20066 20075 29509 29509 -0.05402748350491038 MEEVSGQGL 9 Unmodified _MEEVSGQGL_ 0 0 0 ENSG00000130307|ENST00000252597|USHBP1;nc|ENSG00000130307|Q8N6Y0-2|USHBP1;USHBP1|p.G112Lfs*16|1|0.25|ENSG00000130307|chr19:17262861-17262862|-/GG|frameshift_variant ENSG00000130307|ENST00000252597|USHBP1 ENSG00000130307|ENST00000252597|USHBP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1497802734375 3 317.148025 948.422247 NaN NaN NaN NaN NaN NaN NaN 100.55 1 96.561 96.061 97.061 -3.9895 0 0 0 0.23508 1 19318 19318 2.7352 0 1 29972 3600 20066 20075 29510 29510 -0.05402748350491038 MEEWHHEREHY 11 Unmodified _MEEWHHEREHY_ 0 0 0 nc|ENSG00000164530|Q6UXB8-2|PI16;ENSG00000164530|ENST00000373674|PI16 nc|ENSG00000164530|Q6UXB8-2|PI16 nc|ENSG00000164530|Q6UXB8-2|PI16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 527.7498779296875 3 528.221246 1581.64191 -0.064348 -3.399E-05 -1.5044 -0.00079467 -1.5688 -0.00082866 528.5548758934958 133.31 0.13499 128.67 128.59 128.72 -4.6399 5 3 2 0 0 0 0.89122 1 26268 26268 0.026206 0 1 1591500 29973 5551 20067 20076 29511 29511 -0.12564549410058135 MEEYMNPCY 9 Unmodified _MEEYMNPCY_ 0 0 0 REV__SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant REV__SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2536010742188 2 590.211403 1178.40825 NaN NaN NaN NaN NaN NaN NaN 110.73 1 106.3 105.8 106.8 -4.4231 0 0 0 0.19626 1 21815 21815 0.0033805 0 1 + 29974 15080 20068 20077 29512 29512 -0.17381485165446975 MEFEFSQF 8 Unmodified _MEFEFSQF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.28466796875 2 532.723318 1063.43208 0.31135 0.00016587 3.4998 0.0018644 3.8111 0.0020303 533.2275197833466 139.78 0.34958 134.93 134.74 135.09 -4.8492 10 9 2 0 0 0 0.76728 1 26933 26933 5.7604 0.52976 1 526650 29975 1942 20069 20078 29513 29513 -0.09709560345118007 MEFLQLMSKF 10 Unmodified _MEFLQLMSKF_ 0 0 0 nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1 nc|ENSG00000165006|Q9NZ09-2|UBAP1 nc|ENSG00000165006|Q9NZ09-2|UBAP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2465515136719 3 425.215494 1272.62465 NaN NaN NaN NaN NaN NaN NaN 50.054 1 47.055 46.555 47.555 -2.999 0 0 0 2.8426 1 9161 9161 1.9064 1.8626 1 29976 5587 20070 20079 29514 29514 -0.000755612694320007 MEFLQLMSKF 10 Unmodified _MEFLQLMSKF_ 0 0 0 nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1 nc|ENSG00000165006|Q9NZ09-2|UBAP1 nc|ENSG00000165006|Q9NZ09-2|UBAP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24810791015625 3 425.215494 1272.62465 NaN NaN NaN NaN NaN NaN NaN 125.63 1 120.86 120.36 121.36 -4.7681 0 0 0 2.8426 1 24111 24111 1.9064 1.905 1 29977 5587 20070 20079 29515 29515 -0.000755612694320007 MEFLQLMSKF 10 Unmodified _MEFLQLMSKF_ 0 0 0 nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1 nc|ENSG00000165006|Q9NZ09-2|UBAP1 nc|ENSG00000165006|Q9NZ09-2|UBAP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2511291503906 3 425.215494 1272.62465 NaN NaN NaN NaN NaN NaN NaN 116.68 1 112.32 111.82 112.82 -4.3585 0 0 0 2.8426 1 22463 22463 1.9064 1.8331 1 29978 5587 20070 20079 29516 29516 -0.000755612694320007 MEGESKVD 8 Unmodified _MEGESKVD_ 0 0 0 TEX2|p.T430M|1|0.25|ENSG00000136478|chr17:64212929-64212929|G/A|missense_variant TEX2|p.T430M|1|0.25|ENSG00000136478|chr17:64212929-64212929|G/A|missense_variant TEX2|p.T430M|1|0.25|ENSG00000136478|chr17:64212929-64212929|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 448.35003662109375 2 447.6973 893.380048 -0.3485 -0.00015602 0.10873 4.8679E-05 -0.23977 -0.00010734 447.6973419924167 40.438 0.71383 37.803 37.471 38.185 -2.6348 32 19 2 0 0 0 0.79017 1 7567 7567 4.756 0 1 3794100 29979 25836 20071 20080 29517 29517 -0.07090723758881268 MEGESKVD 8 Unmodified _MEGESKVD_ 0 0 0 TEX2|p.T430M|1|0.25|ENSG00000136478|chr17:64212929-64212929|G/A|missense_variant TEX2|p.T430M|1|0.25|ENSG00000136478|chr17:64212929-64212929|G/A|missense_variant TEX2|p.T430M|1|0.25|ENSG00000136478|chr17:64212929-64212929|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 447.6973 893.380048 0.30482 0.00013647 -0.1399 -6.2631E-05 0.16493 7.3837E-05 447.69727765409135 37.936 0.38826 37.936 37.577 37.965 0 0.068144 -0.00021885 NaN 4.756 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1418900 29980 25836 20071 20080 -0.07090723758881268 MEGESKVD 8 Unmodified _MEGESKVD_ 0 0 0 TEX2|p.T430M|1|0.25|ENSG00000136478|chr17:64212929-64212929|G/A|missense_variant TEX2|p.T430M|1|0.25|ENSG00000136478|chr17:64212929-64212929|G/A|missense_variant TEX2|p.T430M|1|0.25|ENSG00000136478|chr17:64212929-64212929|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 447.6973 893.380048 -0.05872 -2.6289E-05 0.25915 0.00011602 0.20043 8.9733E-05 447.6973685674316 40.405 0.77992 37.865 37.498 38.278 -2.5398 -0.0029221 0.00013845 NaN 4.756 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1934600 29981 25836 20071 20080 -0.07090723758881268 MEHAMETM 8 Unmodified _MEHAMETM_ 0 0 0 ENSG00000197747|ENST00000368811|S100A10;ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2745056152344 2 490.187731 978.360909 0.32587 0.00015974 -0.22412 -0.00010986 0.10175 4.9877E-05 490.1875929629287 39.591 0.48449 39.591 39.304 39.789 0 21 13 2 0 0 0 0.47546 1 7363 7363 44.407 30.899 1 2104700 29982 7395 20072 20081 29518 29518 -0.12913719645791844 MEHAMETM 8 Unmodified _MEHAMETM_ 0 0 0 ENSG00000197747|ENST00000368811|S100A10;ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2740173339844 2 490.187731 978.360909 -0.035408 -1.7356E-05 0.0050784 2.4894E-06 -0.030329 -1.4867E-05 490.18782731529757 42.278 0.3819 39.559 39.277 39.659 -2.7191 22 10 3 0 0 0 0.66066 1 7912 7912 36.044 17.909 1 4412900 29983 7395 20072 20081 29519 29519 -0.12913719645791844 MEHAMETM 8 Unmodified _MEHAMETM_ 0 0 0 ENSG00000197747|ENST00000368811|S100A10;ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.275146484375 2 490.187731 978.360909 -0.22033 -0.000108 0.21799 0.00010686 -0.0023395 -1.1468E-06 490.1878594130803 42.127 0.32287 39.521 39.254 39.577 -2.606 15 8 2 0 0 0 0.66066 1 7541 7541 21.747 13.836 1 3440300 29984 7395 20072 20081 29520 29520 -0.12913719645791844 MEHDGSLFQA 10 Oxidation (M) _M(Oxidation (M))EHDGSLFQA_ M(1)EHDGSLFQA M(50)EHDGSLFQA 0 0 1 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3173828125 2 575.745313 1149.47607 -0.13902 -8.0039E-05 0.37819 0.00021774 0.23917 0.0001377 575.7454233303397 71.733 0.77763 68.484 68.095 68.873 -3.2492 43 21 3 0 0 0 0.13946 2 13959 13959;13986 49.933 27.197 1 2171600 29985 2000 20073 20082 29521;29522 29521 18 -0.09268575918781607 MEHDGSLFQA 10 Oxidation (M) _M(Oxidation (M))EHDGSLFQA_ M(1)EHDGSLFQA M(50)EHDGSLFQA 0 0 1 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3229370117188 2 575.745313 1149.47607 0.3683 0.00021204 -0.27532 -0.00015851 0.092978 5.3532E-05 575.7450530178771 71.896 0.69692 68.357 67.979 68.676 -3.5385 40 19 3 0 0 0 0.13946 1 13641 13641 49.933 27.197 1 2462400 29986 2000 20073 20082 29523 29523 18 -0.09268575918781607 MEHIADKRFL 10 Unmodified _MEHIADKRFL_ 0 0 0 ENSG00000177807|ENST00000644903|KCNJ10 ENSG00000177807|ENST00000644903|KCNJ10 ENSG00000177807|ENST00000644903|KCNJ10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7720336914062 2 630.33189 1258.64923 1.0189 0.00064226 2.419 0.0015248 3.4379 0.002167 630.3356129782971 144.76 0.1342 140.09 139.99 140.13 -4.6694 6 3 2 0 0 0 0.72406 1 28669 28669 8.7454 0.58988 1 1688200 29987 6539 20074 20083 29524 29524 0.030248349283056086 MEHLIHVL 8 Oxidation (M) _M(Oxidation (M))EHLIHVL_ M(1)EHLIHVL M(52)EHLIHVL 0 0 1 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.1890869140625 3 336.516272 1006.52699 0.37109 0.00012488 -0.33777 -0.00011367 0.033315 1.1211E-05 336.51615502028875 88.434 1.2545 84.439 83.549 84.803 -3.9953 31 16 3 0 0 0 8448 1 16860 16860 51.63 15.124 1 1250100 29988 4210 20075 20084 29525 29525 67 0.023984179167314323 MEHLIHVL 8 Oxidation (M) _M(Oxidation (M))EHLIHVL_ 0 0 1 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 336.516272 1006.52699 -0.35917 -0.00012087 0.075095 2.5271E-05 -0.28407 -9.5595E-05 336.51631709295714 88.342 0.64228 84.549 84.126 84.769 -3.7926 0.069154 -7.1894E-05 NaN 51.63 37 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2365800 29989 4210 20075 20084 67 0.023984179167314323 MEHLIHVL 8 Oxidation (M) _M(Oxidation (M))EHLIHVL_ 0 0 1 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 336.516272 1006.52699 -0.49856 -0.00016777 0.62274 0.00020956 0.12418 4.179E-05 336.516405529917 88.203 1.5422 84.453 83.554 85.096 -3.7501 -0.027575 0.00048098 NaN 51.63 44 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3478400 29990 4210 20075 20084 67 0.023984179167314323 MEHPYFYTV 9 Oxidation (M) _M(Oxidation (M))EHPYFYTV_ M(1)EHPYFYTV M(100)EHPYFYTV 0 0 1 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2998657226562 2 601.762975 1201.5114 0.58185 0.00035013 -0.58221 -0.00035035 -0.00036414 -2.1912E-07 601.7627051325685 107.18 1.8423 107.18 106.54 108.38 0 173 52 5 0 0 0 0.011913 1 21024 21024 100.37 58.277 1 197250000 29991 2053 20076 20085 29526 29526 19 -0.08129913391007904 MEHPYFYTV 9 Oxidation (M) _M(Oxidation (M))EHPYFYTV_ M(1)EHPYFYTV M(78)EHPYFYTV 0 0 1 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2953491210938 2 601.762975 1201.5114 0.75329 0.0004533 -0.79275 -0.00047705 -0.039458 -2.3744E-05 601.7625787101397 111.84 2.5659 107.41 106.85 109.42 -4.4231 194 72 5 0 0 0 0.034704 4 22095 21959;22094;22095;22177 78.149 49.353 1 144540000 29992 2053 20076 20085 29527;29528;29529;29530 29529 19 -0.08129913391007904 MEHPYFYTV 9 Oxidation (M) _M(Oxidation (M))EHPYFYTV_ M(1)EHPYFYTV M(52)EHPYFYTV 0 0 1 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2855224609375 2 601.762975 1201.5114 0.29066 0.00017491 -0.25073 -0.00015088 0.039928 2.4027E-05 601.7628549157396 111.75 2.3761 107.26 106.82 109.2 -4.4915 183 67 5 0 0 0 0.11032 1 21385 21385 52.268 28.248 1 98172000 29993 2053 20076 20085 29531 29531 19 -0.08129913391007904 MEHPYFYTV 9 Oxidation (M) _M(Oxidation (M))EHPYFYTV_ M(1)EHPYFYTV M(46)EHPYFYTV 0 0 1 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2833862304688 2 601.762975 1201.5114 0.45709 0.00027506 -0.50327 -0.00030285 -0.046175 -2.7787E-05 601.7627556198435 113.92 0.48406 109.36 109.14 109.62 -4.555 22 13 2 0 0 0 0.13708 1 21873 21873 46.021 21.03 1 1381900 29994 2053 20076 20085 29532 29532 19 -0.08129913391007904 MEHPYFYTV 9 Oxidation (M) _M(Oxidation (M))EHPYFYTV_ M(1)EHPYFYTV M(46)EHPYFYTV 0 0 1 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2756958007812 2 601.762975 1201.5114 0.68431 0.00041179 -0.73317 -0.00044119 -0.048853 -2.9398E-05 601.7626000405656 111.42 2.7955 107.19 106.62 109.42 -4.2289 242 79 5 0 0 0 0.13708 1 21365 21365 46.021 24.274 1 151070000 29995 2053 20076 20085 29533 29533 19 -0.08129913391007904 MEHPYFYTV 9 Oxidation (M) _M(Oxidation (M))EHPYFYTV_ 0 0 1 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 601.762975 1201.5114 0.63021 0.00037924 -0.73175 -0.00044034 -0.10153 -6.1099E-05 601.7625617805711 113.76 0.23997 109.49 109.34 109.58 -4.2725 0.062329 -0.00016571 NaN 46.021 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2428700 29996 2053 20076 20085 19 -0.08129913391007904 MEIGQLNVHY 10 Unmodified _MEIGQLNVHY_ 0 0 0 CCDC13|p.G697Afs*3|1|0.38|ENSG00000244607|chr3:42709038-42709038|C/-|frameshift_variant;ENSG00000244607|ENST00000310232|CCDC13 CCDC13|p.G697Afs*3|1|0.38|ENSG00000244607|chr3:42709038-42709038|C/-|frameshift_variant CCDC13|p.G697Afs*3|1|0.38|ENSG00000244607|chr3:42709038-42709038|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2967529296875 2 602.294973 1202.57539 NaN NaN NaN NaN NaN NaN NaN 120.35 1 115.89 115.39 116.39 -4.467 0 0 0 0.22588 1 23172 23172 10.824 2.2306 1 29997 410 20077 20086 29534 29534 -0.017791332340266308 MEIISCGNI 9 Unmodified _MEIISCGNI_ 0 0 0 ENST00000556962.1_1_14:50789283-50790835:+|nuORF;ENST00000555939.5_1_14:50779073-50791268:+|nuORF;ENSG00000125375|ENST00000557421|DMAC2L;ENST00000554438.5_1_14:50779073-50792438:+|nuORF ENST00000556962.1_1_14:50789283-50790835:+|nuORF ENST00000556962.1_1_14:50789283-50790835:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25537109375 2 490.232996 978.451438 0.11496 5.6356E-05 -3.7885 -0.0018573 -3.6736 -0.0018009 490.230857677425 17.061 0.2505 17.061 16.887 17.137 0 10 6 2 0 0 0 0.7906 1 2679 2679 13.042 0 1 539450 29998 3354 20078 20087 29535 29535 -0.03864927325867029 MEILQPLLE 9 Unmodified _MEILQPLLE_ 0 0 0 MMRN1|p.T664Ffs*13|1|0.08|ENSG00000138722|chr4:89935669-89935670|-/TTTGATTTAAC|frameshift_variant;MMRN1|p.G883Afs*3|1|0.34|ENSG00000138722|chr4:89936321-89936321|A/-|frameshift_variant;ENSG00000138722|ENST00000264790|MMRN1 MMRN1|p.T664Ffs*13|1|0.08|ENSG00000138722|chr4:89935669-89935670|-/TTTGATTTAAC|frameshift_variant MMRN1|p.T664Ffs*13|1|0.08|ENSG00000138722|chr4:89935669-89935670|-/TTTGATTTAAC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.777587890625 2 543.299193 1084.58383 0.20493 0.00011134 -2.653 -0.0014414 -2.4481 -0.00133 543.2975856652276 161.11 0.49942 155.88 155.58 156.08 -5.2299 25 13 3 0 0 0 0.19171 1 31269 31269 38.176 2.0485 1 2140300 29999 4205 20079 20088 29536 29536 0.044924206826181035 MEIMPEDSL 9 Unmodified _MEIMPEDSL_ 0 0 0 FAM187B|p.G78D|1|0.09|ENSG00000177558|chr19:35228448-35228448|C/T|missense_variant FAM187B|p.G78D|1|0.09|ENSG00000177558|chr19:35228448-35228448|C/T|missense_variant FAM187B|p.G78D|1|0.09|ENSG00000177558|chr19:35228448-35228448|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2839965820312 2 532.735568 1063.45658 0.46138 0.00024579 2.8687 0.0015282 3.33 0.001774 533.2368835943373 82.359 0.48231 78.486 78.332 78.814 -3.8736 20 13 2 0 0 0 0.79204 1 15621 15621 11.64 1.5664 1 1101100 30000 11795 20080 20089 29537 29537 -0.07260668253911717 MEITVHGSGL 10 Unmodified _MEITVHGSGL_ 0 0 0 REV__ENST00000247020.8_1_17:26975873-26975987:-|nuORF REV__ENST00000247020.8_1_17:26975873-26975987:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2757568359375 2 522.263142 1042.51173 NaN NaN NaN NaN NaN NaN NaN 150.58 1 145.85 145.35 146.35 -4.7323 0 0 0 0.22576 1 29910 29910 14.838 3.198 1 + 30001 20099 20081 20090 29538 29538 -0.007824936711131159 MEITVQQL 8 Unmodified _MEITVQQL_ 0 0 0 ENST00000533761.5_2_11:82985654-82991222:-|nuORF ENST00000533761.5_2_11:82985654-82991222:-|nuORF ENST00000533761.5_2_11:82985654-82991222:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2313537597656 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 131.08 1 126.24 125.74 126.74 -4.8355 0 0 0 0.17894 1 25168 25168 32.117 7.4431 1 30002 11000 20082 20091 29539 29539 0.013190054429401243 MEITVQQL 8 Unmodified _MEITVQQL_ 0 0 0 ENST00000533761.5_2_11:82985654-82991222:-|nuORF ENST00000533761.5_2_11:82985654-82991222:-|nuORF ENST00000533761.5_2_11:82985654-82991222:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2543640136719 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 131.11 1 126.27 125.77 126.77 -4.8355 0 0 0 0.17894 1 25176 25176 32.117 7.4431 1 30003 11000 20082 20091 29540 29540 0.013190054429401243 MEITVQQL 8 Unmodified _MEITVQQL_ 0 0 0 ENST00000533761.5_2_11:82985654-82991222:-|nuORF ENST00000533761.5_2_11:82985654-82991222:-|nuORF ENST00000533761.5_2_11:82985654-82991222:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2548522949219 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 131.1 1 126.32 125.82 126.82 -4.7725 0 0 0 0.17894 1 25236 25236 32.117 7.4431 1 30004 11000 20082 20091 29541 29541 0.013190054429401243 MEKAFAFQA 9 Unmodified _MEKAFAFQA_ 0 0 0 nc|ENSG00000075975|Q9H000-2|MKRN2;ENSG00000075975|ENST00000170447|MKRN2 nc|ENSG00000075975|Q9H000-2|MKRN2 nc|ENSG00000075975|Q9H000-2|MKRN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2566528320312 2 521.754953 1041.49535 0.45331 0.00023652 -0.10565 -5.5123E-05 0.34766 0.00018139 521.7550451895137 99.43 0.52555 99.43 99.127 99.653 0 21 13 2 0 0 0 0.26842 1 19487 19487 33.445 12.991 1 1738300 30005 1531 20083 20092 29542 29542 -0.02373574837201886 MEKAFAFQA 9 Unmodified _MEKAFAFQA_ 0 0 0 nc|ENSG00000075975|Q9H000-2|MKRN2;ENSG00000075975|ENST00000170447|MKRN2 nc|ENSG00000075975|Q9H000-2|MKRN2 nc|ENSG00000075975|Q9H000-2|MKRN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2567138671875 2 521.754953 1041.49535 -0.33317 -0.00017383 -3.0133 -0.0015722 -3.3464 -0.001746 522.7540666762566 103.41 0.88176 99.226 98.805 99.687 -4.1861 64 25 3 0 0 0 0.33094 2 20396 20396;20404 29.841 4.4413 1 2742400 30006 1531 20083 20092 29543;29544 29543 -0.02373574837201886 MEKAFAFQA 9 Unmodified _MEKAFAFQA_ 0 0 0 nc|ENSG00000075975|Q9H000-2|MKRN2;ENSG00000075975|ENST00000170447|MKRN2 nc|ENSG00000075975|Q9H000-2|MKRN2 nc|ENSG00000075975|Q9H000-2|MKRN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2798461914062 2 521.754953 1041.49535 0.65868 0.00034367 -3.8616 -0.0020148 -3.2029 -0.0016711 522.2549524661372 103.29 0.88866 99.273 98.77 99.659 -4.0212 57 22 3 0 0 0 0.21532 1 19876 19876 36.506 9.6225 1 2435300 30007 1531 20083 20092 29545 29545 -0.02373574837201886 MEKIKQYQA 9 Unmodified _MEKIKQYQA_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 379.8836975097656 3 380.202353 1137.58523 -0.080837 -3.0735E-05 0.22286 8.4733E-05 0.14202 5.3998E-05 380.2024229247645 27.259 0.37462 27.259 27.079 27.454 0 25 10 3 0 0 0 0.10782 1 4810 4810 51.415 36.458 1 1062600 30008 4765 20084 20093 29546 29546 0.021940547713711567 MEKIKQYQA 9 Unmodified _MEKIKQYQA_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.202353 1137.58523 0.40133 0.00015259 -0.4872 -0.00018523 -0.085867 -3.2647E-05 380.20219878621447 29.447 0.464 27.491 27.191 27.655 -1.9561 0.12704 -0.00045393 NaN 51.415 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1529300 30009 4765 20084 20093 0.021940547713711567 MEKIKQYQA 9 Unmodified _MEKIKQYQA_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.202353 1137.58523 0.32814 0.00012476 -0.35596 -0.00013534 -0.027815 -1.0576E-05 380.20221862279953 29.262 0.56775 27.37 26.979 27.547 -1.8928 0.0054502 -0.00030424 NaN 51.415 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1340100 30010 4765 20084 20093 0.021940547713711567 MEKIKQYQA 9 Unmodified _MEKIKQYQA_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 380.202353 1137.58523 -0.21194 -8.0582E-05 0.24351 9.2582E-05 0.031563 1.2E-05 380.20242699417696 29.411 0.48852 27.337 27.067 27.556 -2.0743 -0.027129 0.00037952 NaN 51.415 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1186800 30011 4765 20084 20093 0.021940547713711567 MEKIQPAL 8 Unmodified _MEKIQPAL_ 0 0 0 ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5 ENST00000553171.1_1_12:53691669-53691972:+|nuORF ENST00000553171.1_1_12:53691669-53691972:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2370300292969 2 465.259871 928.505189 -0.035642 -1.6583E-05 0.027914 1.2987E-05 -0.0077287 -3.5958E-06 465.2597991315714 81.203 1.0488 77.364 76.664 77.713 -3.8392 54 29 2 0 0 0 0.54916 2 15395 15395;15484 25.399 6.1423 1 1823600 30012 3261 20085 20094 29547;29548 29547 0.03807613168157786 MEKIQPAL 8 Unmodified _MEKIQPAL_ 0 0 0 ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5 ENST00000553171.1_1_12:53691669-53691972:+|nuORF ENST00000553171.1_1_12:53691669-53691972:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2510070800781 2 465.259871 928.505189 -0.19925 -9.2702E-05 0.12091 5.6256E-05 -0.078335 -3.6446E-05 465.25990116151047 81.16 0.97871 77.472 76.753 77.732 -3.6879 47 27 2 0 0 0 0.060682 1 15456 15456 85.272 17.191 1 1783600 30013 3261 20085 20094 29549 29549 0.03807613168157786 MEKLESNI 8 Unmodified _MEKLESNI_ 0 0 0 REV__nc|ENSG00000043143|Q9NQC1-3|JADE2 REV__nc|ENSG00000043143|Q9NQC1-3|JADE2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7782287597656 2 482.244418 962.474282 -0.21786 -0.00010506 0.28768 0.00013873 0.069824 3.3672E-05 482.24475636972033 57.445 0.51645 57.445 57.165 57.681 0 21 14 2 0 0 0 0.91917 1 10989 10989 20.454 0 1 890040 + 30014 14054 20086 20095 29550 29550 -0.008455849367237533 MEKNLKSL 8 Unmodified _MEKNLKSL_ 0 0 0 nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7709045410156 2 481.770603 961.526652 NaN NaN NaN NaN NaN NaN NaN 24.774 1 22.921 22.421 23.421 -1.8534 0 0 0 0.21486 1 4043 4043 12.532 0 1 30015 2742 20087 20096 29551 29551 0.04434998196870765 MEKRPSLPV 9 Unmodified _MEKRPSLPV_ 0 0 0 ENSG00000235750|ENST00000423313|KIAA0040 ENSG00000235750|ENST00000423313|KIAA0040 ENSG00000235750|ENST00000423313|KIAA0040 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 353.1954345703125 3 352.867193 1055.57975 -0.22282 -7.8624E-05 -0.018296 -6.4562E-06 -0.24111 -8.508E-05 352.867206709315 63.643 0.86295 60.646 60.119 60.982 -2.9975 62 24 4 0 0 0 0.25976 1 12254 12254 24.882 11.347 1 6799800 30016 7822 20088 20097 29552 29552 0.05418375979525081 MEKRPSLPV 9 Unmodified _MEKRPSLPV_ 0 0 0 ENSG00000235750|ENST00000423313|KIAA0040 ENSG00000235750|ENST00000423313|KIAA0040 ENSG00000235750|ENST00000423313|KIAA0040 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 352.867193 1055.57975 -0.59453 -0.00020979 0.30009 0.00010589 -0.29444 -0.0001039 352.8672968316968 60.841 0.77274 60.841 60.452 61.224 0 0.1847 0.00034545 NaN 24.882 55 21 3 NaN NaN NaN NaN 0 NaN NaN 0 13898000 30017 7822 20088 20097 0.05418375979525081 MEKRPSLPV 9 Unmodified _MEKRPSLPV_ 0 0 0 ENSG00000235750|ENST00000423313|KIAA0040 ENSG00000235750|ENST00000423313|KIAA0040 ENSG00000235750|ENST00000423313|KIAA0040 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 352.867193 1055.57975 0.19063 6.7268E-05 -0.47477 -0.00016753 -0.28414 -0.00010026 352.8670562266168 64.003 0.80652 60.587 60.219 61.025 -3.4158 -0.069585 -0.00047481 NaN 24.882 52 22 4 NaN NaN NaN NaN 0 NaN NaN 0 5255700 30018 7822 20088 20097 0.05418375979525081 MEKRPSLPV 9 Unmodified _MEKRPSLPV_ 0 0 0 ENSG00000235750|ENST00000423313|KIAA0040 ENSG00000235750|ENST00000423313|KIAA0040 ENSG00000235750|ENST00000423313|KIAA0040 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 352.867193 1055.57975 -0.41913 -0.0001479 0.16126 5.6903E-05 -0.25787 -9.0993E-05 352.86723161976363 63.809 0.78877 60.552 60.194 60.983 -3.2567 -0.1044 0.00019849 NaN 24.882 49 22 3 NaN NaN NaN NaN 0 NaN NaN 0 9817800 30019 7822 20088 20097 0.05418375979525081 MEKRQLSFL 9 Unmodified _MEKRQLSFL_ 0 0 0 TJP2|p.K38Rfs*105|1|0.44|ENSG00000119139|chr9:69212597-69212597|A/-|frameshift_variant TJP2|p.K38Rfs*105|1|0.44|ENSG00000119139|chr9:69212597-69212597|A/-|frameshift_variant TJP2|p.K38Rfs*105|1|0.44|ENSG00000119139|chr9:69212597-69212597|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3153686523438 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 149.66 1 144.93 144.43 145.43 -4.7323 0 0 0 0.23508 1 29719 29719 10.074 1.9184 1 30020 25851 20089 20098 29553 29553 0.047580475252971155 MELELLAQSIG 11 Unmodified _MELELLAQSIG_ 0 0 0 REV__ENST00000479123.1_1_2:3623223-3624265:+|nuORF REV__ENST00000479123.1_1_2:3623223-3624265:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2919921875 2 602.318114 1202.62167 0.4559 0.0002746 2.5227 0.0015195 2.9786 0.0017941 602.3184993948645 120.12 0.41031 115.65 115.44 115.85 -4.467 12 11 2 0 0 0 0.70375 1 23098 23098 11.495 2.1116 1 923760 + 30021 18258 20090 20099 29554 29554 0.028468868774098155 MELEQRPAL 9 Unmodified _MELEQRPAL_ 0 0 0 ENST00000567209.2_1_16:28985574-28985997:-|nuORF ENST00000567209.2_1_16:28985574-28985997:-|nuORF ENST00000567209.2_1_16:28985574-28985997:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7843017578125 2 543.784241 1085.55393 -0.13059 -7.1011E-05 -0.29996 -0.00016311 -0.43054 -0.00023412 543.7842463197084 106.34 1.6071 102.08 101.13 102.74 -4.2638 157 45 5 0 0 0 0.52396 1 21042 21042 18.146 0 1 34361000 30022 11378 20091 20100 29555 29555 0.014574817372704274 MELERIVSA 9 Unmodified _MELERIVSA_ 0 0 0 ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF ENSG00000107874|ENST00000369937|CUEDC2 ENSG00000107874|ENST00000369937|CUEDC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6932373046875 2 524.278792 1046.54303 0.44459 0.00023309 0.27501 0.00014418 0.71961 0.00037728 524.2785735862525 105.45 0.80778 105.45 105.07 105.88 0 71 22 5 0 0 0 0.069883 1 20734 20734 67.081 27.131 1 29546000 30023 2446 20092 20101 29556 29556 0.021620793629836044 MELERIVSA 9 Unmodified _MELERIVSA_ 0 0 0 ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF ENSG00000107874|ENST00000369937|CUEDC2 ENSG00000107874|ENST00000369937|CUEDC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6901245117188 2 524.278792 1046.54303 -0.59294 -0.00031087 0.99309 0.00052066 0.40015 0.00020979 524.2791052049793 109.54 0.80435 105.17 104.71 105.52 -4.3776 76 22 4 0 0 0 0.6297 1 21640 21640 34.222 19.383 1 22159000 30024 2446 20092 20101 29557 29557 0.021620793629836044 MELERIVSA 9 Unmodified _MELERIVSA_ 0 0 0 ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF ENSG00000107874|ENST00000369937|CUEDC2 ENSG00000107874|ENST00000369937|CUEDC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6892700195312 2 524.278792 1046.54303 -0.67486 -0.00035381 1.0705 0.00056124 0.39564 0.00020743 524.2791304874169 109.67 0.87675 105.21 104.71 105.59 -4.4518 80 24 4 0 0 0 0.21002 1 21065 21065 54.068 34.678 1 26085000 30025 2446 20092 20101 29558 29558 0.021620793629836044 MELERIVSA 9 Unmodified _MELERIVSA_ 0 0 0 ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF ENSG00000107874|ENST00000369937|CUEDC2 ENSG00000107874|ENST00000369937|CUEDC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6906127929688 2 524.278792 1046.54303 0.70582 0.00037005 -0.15782 -8.2742E-05 0.548 0.00028731 524.2784115390172 109.44 0.78205 105.25 104.83 105.62 -4.1826 75 21 5 0 0 0 0.069883 1 21084 21084 67.081 27.131 1 19362000 30026 2446 20092 20101 29559 29559 0.021620793629836044 MELFFAAFLK 10 Unmodified _MELFFAAFLK_ 0 0 0 REV__ENSG00000150656|ENST00000358821|CNDP1 REV__ENSG00000150656|ENST00000358821|CNDP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.03253173828125 4 304.916327 1215.6362 -0.47804 -0.00014576 0.051775 1.5787E-05 -0.42627 -0.00012998 304.91631692217385 35.15 0.59516 35.15 34.889 35.485 0 48 16 4 0 0 0 0.91149 1 6400 6400 0 0 1 12470000 + 30027 17038 20093 20102 29560 29560 0.03701003816172488 MELFFAAFLK 10 Unmodified _MELFFAAFLK_ 0 0 0 REV__ENSG00000150656|ENST00000358821|CNDP1 REV__ENSG00000150656|ENST00000358821|CNDP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 304.916327 1215.6362 -0.64952 -0.00019805 0.22823 6.959E-05 -0.42129 -0.00012846 304.9163760293714 37.535 0.59861 35.066 34.806 35.405 -2.4688 -0.040914 0.00025507 NaN 0 49 16 4 NaN NaN NaN NaN 0 NaN NaN 0 11646000 + 30028 17038 20093 20102 0.03701003816172488 MELFFAAFLK 10 Unmodified _MELFFAAFLK_ 0 0 0 REV__ENSG00000150656|ENST00000358821|CNDP1 REV__ENSG00000150656|ENST00000358821|CNDP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 304.916327 1215.6362 0.090277 2.7527E-05 -0.43559 -0.00013282 -0.34532 -0.00010529 304.91614439384574 37.463 0.55314 35.115 34.856 35.409 -2.3479 0.0078697 -0.00055457 NaN 0 53 15 4 NaN NaN NaN NaN 0 NaN NaN 0 10971000 + 30029 17038 20093 20102 0.03701003816172488 MELFFAAFLK 10 Unmodified _MELFFAAFLK_ 0 0 0 REV__ENSG00000150656|ENST00000358821|CNDP1 REV__ENSG00000150656|ENST00000358821|CNDP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 304.916327 1215.6362 -0.45827 -0.00013973 0.17561 5.3545E-05 -0.28266 -8.6189E-05 304.91635444560677 37.434 0.55589 35.097 34.842 35.398 -2.3375 -0.010184 0.00019089 NaN 0 51 15 4 NaN NaN NaN NaN 0 NaN NaN 0 7320300 + 30030 17038 20093 20102 0.03701003816172488 MELLKHSVE 9 Unmodified _MELLKHSVE_ 0 0 0 REV__ENSG00000100865|ENST00000216756|CINP REV__ENSG00000100865|ENST00000216756|CINP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.787841796875 2 543.286617 1084.55868 0.32481 0.00017646 -0.38872 -0.00021119 -0.063909 -3.4721E-05 543.2864603052546 116.69 1.2941 116.69 115.98 117.27 0 90 36 3 0 0 0 0.13932 6 23026 22878;22910;22926;23020;23026;23072 45.7 19.431 1 10408000 + 30031 14745 20094 20103 29561;29562;29563;29564;29565;29566 29565 0.019783658800179182 MELLKHSVE 9 Unmodified _MELLKHSVE_ 0 0 0 REV__ENSG00000100865|ENST00000216756|CINP REV__ENSG00000100865|ENST00000216756|CINP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7880859375 2 543.286617 1084.55868 0.47677 0.00025902 -0.55985 -0.00030416 -0.083078 -4.5135E-05 543.2863326152689 121.07 1.3425 116.52 115.76 117.1 -4.5476 103 37 3 0 0 0 0.10573 2 23821 23821;23870 53.833 11.993 1 17327000 + 30032 14745 20094 20103 29567;29568 29567 0.019783658800179182 MELLKHSVE 9 Unmodified _MELLKHSVE_ 0 0 0 REV__ENSG00000100865|ENST00000216756|CINP REV__ENSG00000100865|ENST00000216756|CINP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7876586914062 2 543.286617 1084.55868 0.61951 0.00033657 -0.67587 -0.00036719 -0.056366 -3.0623E-05 543.2862761657457 121.16 1.4759 116.47 115.69 117.16 -4.6873 123 41 4 0 0 0 0.12505 6 23174 23174;23223;23267;23318;23331;23366 47.749 14.963 1 16645000 + 30033 14745 20094 20103 29569;29570;29571;29572;29573;29574 29569 0.019783658800179182 MELLKHSVE 9 Unmodified _MELLKHSVE_ 0 0 0 REV__ENSG00000100865|ENST00000216756|CINP REV__ENSG00000100865|ENST00000216756|CINP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7769165039062 2 543.286617 1084.55868 0.43599 0.00023687 -0.37278 -0.00020253 0.063213 3.4343E-05 543.2864275704613 121.14 1.4668 116.61 115.68 117.15 -4.5305 107 40 3 0 0 0 0.086396 5 23256 23174;23186;23256;23314;23401 60.074 18.234 1 13821000 + 30034 14745 20094 20103 29575;29576;29577;29578;29579 29577 0.019783658800179182 MELLKHSVE 9 Unmodified _MELLKHSVE_ 0 0 0 REV__ENSG00000100865|ENST00000216756|CINP REV__ENSG00000100865|ENST00000216756|CINP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7780151367188 2 543.286617 1084.55868 0.43599 0.00023687 -0.37278 -0.00020253 0.063213 3.4343E-05 543.2864275704613 121.14 1.4668 116.61 115.68 117.15 -4.5305 107 40 3 0 0 0 0.66788 1 23378 23378 29.082 12.932 1 13821000 + 30035 14745 20094 20103 29580 29580 0.019783658800179182 MELLKHSVE 9 Unmodified _MELLKHSVE_ 0 0 0 REV__ENSG00000100865|ENST00000216756|CINP REV__ENSG00000100865|ENST00000216756|CINP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.286617 1084.55868 0.32481 0.00017646 -0.38872 -0.00021119 -0.063909 -3.4721E-05 543.2864603052546 116.69 1.2941 116.69 115.98 117.27 0 0.11451 0.00011535 NaN 60.074 90 36 3 NaN NaN NaN NaN 0 NaN NaN 0 10408000 + 30036 14745 20094 20103 0.019783658800179182 MELLKHSVE 9 Unmodified _MELLKHSVE_ 0 0 0 REV__ENSG00000100865|ENST00000216756|CINP REV__ENSG00000100865|ENST00000216756|CINP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.286617 1084.55868 0.47677 0.00025902 -0.55985 -0.00030416 -0.083078 -4.5135E-05 543.2863326152689 121.07 1.3425 116.52 115.76 117.1 -4.5476 -0.049757 -7.0597E-05 NaN 60.074 103 37 3 NaN NaN NaN NaN 0 NaN NaN 0 17327000 + 30037 14745 20094 20103 0.019783658800179182 MELVQLSAA 9 Unmodified _MELVQLSAA_ 0 0 0 REV__ENSG00000178502|ENST00000319121|KLHL11 REV__ENSG00000178502|ENST00000319121|KLHL11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.242431640625 2 481.254785 960.495018 -0.12099 -5.8229E-05 0.54791 0.00026368 0.42692 0.00020546 481.25499327573965 56.283 0.48399 53.388 53.166 53.65 -2.8944 21 13 2 0 0 0 0.25976 1 10775 10775 7.4771 0 1 4562100 + 30038 18608 20095 20104 29581 29581 0.01319005442917387 MEMLCAGRVP 10 Carbamidomethyl (C),Oxidation (M) _MEM(Oxidation (M))LC(Carbamidomethyl (C))AGRVP_ MEMLC(1)AGRVP M(0.006)EM(0.994)LCAGRVP MEMLC(57)AGRVP M(-22)EM(22)LCAGRVP 0 1 1 EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.269287109375 2 590.269587 1178.52462 0.48159 0.00028427 -0.3164 -0.00018676 0.16519 9.7508E-05 590.2694817082587 74.85 1.219 74.85 74.497 75.716 0 77 34 3 0 0 0 0.10926 2 14617 14617;14667 57.249 44.377 2 8026200 30039 3337 20096 20105 29582;29583 29582 5 54;55 -0.057501218748711835 MEMLCAGRVP 10 Carbamidomethyl (C),Oxidation (M) _MEM(Oxidation (M))LC(Carbamidomethyl (C))AGRVP_ MEMLC(1)AGRVP M(0.008)EM(0.992)LCAGRVP MEMLC(46)AGRVP M(-21)EM(21)LCAGRVP 0 1 1 EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2700805664062 2 590.269587 1178.52462 0.57032 0.00033664 -0.8105 -0.00047842 -0.24018 -0.00014177 590.2691082743441 76.191 1.2284 76.191 75.611 76.839 0 58 34 2 0 0 0 0.18128 1 14892 14892 45.74 32.867 2 2027500 30040 3337 20096 20105 29584 29584 5 54;55 -0.057501218748711835 MEMLCAGRVP 10 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))EMLC(Carbamidomethyl (C))AGRVP_ MEMLC(1)AGRVP M(1)EMLCAGRVP MEMLC(90)AGRVP M(43)EM(-43)LCAGRVP 0 1 1 EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2695922851562 2 590.269587 1178.52462 0.75185 0.00044379 -0.21639 -0.00012773 0.53546 0.00031606 590.2695272122223 79.911 1.6797 79.911 79.34 81.019 0 80 47 2 0 0 0 0.019277 5 15596 15544;15553;15596;15644;15690 90.135 57.829 2 4285200 30041 3337 20096 20105 29585;29586;29587;29588;29589 29587 5 54;55 -0.057501218748711835 MEMLCAGRVP 10 Carbamidomethyl (C),Oxidation (M) _MEM(Oxidation (M))LC(Carbamidomethyl (C))AGRVP_ MEMLC(1)AGRVP M(0.02)EM(0.98)LCAGRVP MEMLC(57)AGRVP M(-17)EM(17)LCAGRVP 0 1 1 EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2698364257812 2 590.269587 1178.52462 0.48448 0.00028598 -0.56594 -0.00033406 -0.081462 -4.8085E-05 590.2693014154062 78.755 1.207 75.291 74.818 76.025 -3.4633 73 33 3 0 0 0 0.10926 3 15461 15417;15461;15511 57.249 49.527 2 9214300 30042 3337 20096 20105 29590;29591;29592 29591 5 54;55 -0.057501218748711835 MEMLCAGRVP 10 Carbamidomethyl (C),Oxidation (M) _MEM(Oxidation (M))LC(Carbamidomethyl (C))AGRVP_ MEMLC(1)AGRVP M(0.008)EM(0.992)LCAGRVP MEMLC(46)AGRVP M(-21)EM(21)LCAGRVP 0 1 1 EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.269775390625 2 590.269587 1178.52462 0.48868 0.00028846 -0.38663 -0.00022822 0.10205 6.024E-05 590.2693424514689 79.59 1.3473 76.08 75.727 77.074 -3.5102 59 37 2 0 0 0 0.18128 2 15649 15542;15649 45.74 29.174 2 2629300 30043 3337 20096 20105 29593;29594 29594 5 54;55 -0.057501218748711835 MEMLCAGRVP 10 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))EMLC(Carbamidomethyl (C))AGRVP_ MEMLC(1)AGRVP M(1)EMLCAGRVP MEMLC(90)AGRVP M(43)EM(-43)LCAGRVP 0 1 1 EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2698364257812 2 590.269587 1178.52462 0.44137 0.00026052 -0.67968 -0.00040119 -0.23831 -0.00014067 590.2695870534269 83.74 1.5657 80.132 79.513 81.079 -3.6079 101 44 3 0 0 0 0.019277 3 16384 16283;16333;16384 90.135 64.736 2 5362100 30044 3337 20096 20105 29595;29596;29597 29597 5 54;55 -0.057501218748711835 MEMLCAGRVP 10 Carbamidomethyl (C),Oxidation (M) _MEM(Oxidation (M))LC(Carbamidomethyl (C))AGRVP_ MEMLC(1)AGRVP M(0.008)EM(0.992)LCAGRVP MEMLC(50)AGRVP M(-21)EM(21)LCAGRVP 0 1 1 EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2696533203125 2 590.269587 1178.52462 0.37209 0.00021963 -0.14537 -8.5805E-05 0.22672 0.00013383 590.2694952272547 78.991 0.98422 75.186 74.806 75.79 -3.8048 55 27 3 0 0 0 0.14114 1 15048 15048 49.527 37.353 2 6236600 30045 3337 20096 20105 29598 29598 5 54;55 -0.057501218748711835 MEMLCAGRVP 10 Carbamidomethyl (C),Oxidation (M) _MEM(Oxidation (M))LC(Carbamidomethyl (C))AGRVP_ MEMLC(1)AGRVP M(0.002)EM(0.998)LCAGRVP MEMLC(51)AGRVP M(-28)EM(28)LCAGRVP 0 1 1 EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2547607421875 2 590.269587 1178.52462 -0.030475 -1.7988E-05 0.15862 9.3628E-05 0.12814 7.564E-05 590.2696472409011 78.846 1.2609 75.17 74.816 76.077 -3.676 65 35 3 0 0 0 0.13334 4 15052 15052;15065;15115;15163 51.415 33.269 2 7721500 30046 3337 20096 20105 29599;29600;29601;29602 29599 5 54;55 -0.057501218748711835 MEMLVEHQA 9 Unmodified _MEMLVEHQA_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:252432-252597:+|nuORF;ENST00000529679.1_1_11:251741-252597:+|nuORF ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7822875976562 2 544.249177 1086.4838 0.062004 3.3745E-05 0.1178 6.4112E-05 0.1798 9.7857E-05 544.2493920833879 69.41 0.98808 69.41 68.684 69.672 0 54 27 3 0 0 0 0.34246 1 13404 13404 40.239 17.091 1 9162600 30047 7004 20097 20106 29603 29603 -0.055981399228357986 MEMLVEHQA 9 Unmodified _MEMLVEHQA_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:252432-252597:+|nuORF;ENST00000529679.1_1_11:251741-252597:+|nuORF ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7933959960938 2 544.249177 1086.4838 0.097647 5.3144E-05 -0.38345 -0.00020869 -0.2858 -0.00015555 544.2493507440832 72.688 0.75352 69.377 68.954 69.707 -3.3107 59 20 5 0 0 0 0.545 1 14207 14207 29.841 25.511 1 11196000 30048 7004 20097 20106 29604 29604 -0.055981399228357986 MEMLVEHQA 9 Unmodified _MEMLVEHQA_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:252432-252597:+|nuORF;ENST00000529679.1_1_11:251741-252597:+|nuORF ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7945556640625 2 544.249177 1086.4838 0.27046 0.0001472 -0.44583 -0.00024264 -0.17537 -9.5448E-05 544.2492090276679 73.041 0.78957 69.413 68.91 69.7 -3.6275 60 21 4 0 0 0 0.027495 1 13804 13804 96.111 58.137 1 10481000 30049 7004 20097 20106 29605 29605 -0.055981399228357986 MEMLVEHQA 9 Unmodified _MEMLVEHQA_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:252432-252597:+|nuORF;ENST00000529679.1_1_11:251741-252597:+|nuORF ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7804565429688 2 544.249177 1086.4838 0.45197 0.00024598 -0.23831 -0.0001297 0.21366 0.00011628 544.2490878556929 72.965 0.79811 69.427 68.914 69.712 -3.5385 57 22 3 0 0 0 0.27332 1 13821 13821 36.506 19.564 1 11195000 30050 7004 20097 20106 29606 29606 -0.055981399228357986 MENANQEN 8 Unmodified _MENANQEN_ 0 0 0 ENSG00000133169|ENST00000372728|BEX1 ENSG00000133169|ENST00000372728|BEX1 ENSG00000133169|ENST00000372728|BEX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1480407714844 3 317.127513 948.360709 NaN NaN NaN NaN NaN NaN NaN 101.2 1 101.2 100.7 101.7 0 0 0 0 0.21486 1 19861 19861 0.45834 0 1 30051 3789 20098 20107 29607 29607 -0.11553680049780723 MENDSYPG 8 Unmodified _MENDSYPG_ 0 0 0 REV__ENSG00000165476|ENST00000373758|REEP3 REV__ENSG00000165476|ENST00000373758|REEP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.0132751464844 3 304.784976 911.333097 -0.48762 -0.00014862 0.15608 4.7572E-05 -0.33153 -0.00010105 304.7850702825228 34.204 0.5475 34.204 33.901 34.449 0 21 15 2 0 0 0 1.0276 1 6237 6237 0 0 1 535900 + 30052 17772 20099 20108 29608 29608 -0.12611583310012975 MENEMAHYA 9 Unmodified _MENEMAHYA_ 0 0 0 ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1 ENST00000478124.5_1_7:30634537-30662079:+|nuORF ENST00000478124.5_1_7:30634537-30662079:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7859497070312 2 548.215334 1094.41612 -0.0065327 -3.5813E-06 -0.10737 -5.8862E-05 -0.1139 -6.2444E-05 548.2152663493782 55.377 0.41462 52.493 52.247 52.662 -2.8837 21 11 2 0 0 0 0.058839 1 10608 10608 86.332 81.616 1 9282900 30053 2363 20100 20109 29609 29609 -0.12731589853660807 MENEMAHYA 9 Unmodified _MENEMAHYA_ 0 0 0 ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1 ENST00000478124.5_1_7:30634537-30662079:+|nuORF ENST00000478124.5_1_7:30634537-30662079:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7733764648438 2 548.215334 1094.41612 0.069167 3.7919E-05 -0.24055 -0.00013187 -0.17138 -9.3955E-05 548.215222555768 55.657 0.58281 52.519 52.216 52.799 -3.1377 29 16 3 0 0 0 0.13686 1 10368 10368 61.357 38.209 1 6124400 30054 2363 20100 20109 29610 29610 -0.12731589853660807 MENEMAHYA 9 Unmodified _MENEMAHYA_ 0 0 0 ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1 ENST00000478124.5_1_7:30634537-30662079:+|nuORF ENST00000478124.5_1_7:30634537-30662079:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 548.215334 1094.41612 0.39414 0.00021607 -0.80116 -0.00043921 -0.40703 -0.00022314 548.2150660710467 52.392 0.49717 52.392 52.075 52.573 0 -0.075377 -0.00050151 NaN 86.332 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 6386700 30055 2363 20100 20109 -0.12731589853660807 MENEMAHYA 9 Unmodified _MENEMAHYA_ 0 0 0 ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1 ENST00000478124.5_1_7:30634537-30662079:+|nuORF ENST00000478124.5_1_7:30634537-30662079:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 548.215334 1094.41612 0.091227 5.0012E-05 -0.46911 -0.00025717 -0.37788 -0.00020716 548.2152198865939 55.654 0.48828 52.464 52.182 52.67 -3.1895 -0.0027245 -0.00013744 NaN 86.332 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 6997500 30056 2363 20100 20109 -0.12731589853660807 MENGAVYSP 9 Unmodified _MENGAVYSP_ 0 0 0 CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant;ENST00000495177.1_1_3:32529411-32544237:-|nuORF;ENSG00000091317|ENST00000205636|CMTM6 CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 967.4169921875 1 967.418959 966.411682 0.29878 0.00028904 -0.80374 -0.00077755 -0.50497 -0.00048851 967.4177598845371 55.692 0.66343 52.502 52.251 52.914 -3.1895 31 18 2 0 0 0 0.15274 1 10286 10286 43.772 22.026 1 2426800 30057 592 20101 20110 29611 29611 -0.07286731004921876 MENGAVYSP 9 Unmodified _MENGAVYSP_ 0 0 0 CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant;ENST00000495177.1_1_3:32529411-32544237:-|nuORF;ENSG00000091317|ENST00000205636|CMTM6 CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 967.418959 966.411682 -0.15914 -0.00015395 -0.082659 -7.9966E-05 -0.2418 -0.00023392 967.4186797331487 55.549 0.62455 52.665 52.352 52.977 -2.8837 0.086191 0.00030577 NaN 43.772 21 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2411700 30058 592 20101 20110 -0.07286731004921876 MENGAVYSP 9 Unmodified _MENGAVYSP_ 0 0 0 CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant;ENST00000495177.1_1_3:32529411-32544237:-|nuORF;ENSG00000091317|ENST00000205636|CMTM6 CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 967.418959 966.411682 0.12562 0.00012153 -0.41198 -0.00039855 -0.28636 -0.00027703 967.4185394485122 55.737 0.75829 52.57 52.187 52.945 -3.1672 -0.0093189 -1.282E-05 NaN 43.772 38 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2143300 30059 592 20101 20110 -0.07286731004921876 MENMFLQSS 9 Unmodified _MENMFLQSS_ 0 0 0 TLR8|p.T437Kfs*11|1|0.07|ENSG00000101916|chrX:12920349-12920350|-/AGTTTGGAAG|frameshift_variant;TLR8|p.N912Tfs*6|1|0.39|ENSG00000101916|chrX:12921771-12921771|A/-|frameshift_variant;TLR8|p.Y950Ifs*8|1|0.35|ENSG00000101916|chrX:12921881-12921882|-/A|frameshift_variant;ENSG00000101916|ENST00000218032|TLR8 TLR8|p.T437Kfs*11|1|0.07|ENSG00000101916|chrX:12920349-12920350|-/AGTTTGGAAG|frameshift_variant TLR8|p.T437Kfs*11|1|0.07|ENSG00000101916|chrX:12920349-12920350|-/AGTTTGGAAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7742919921875 2 543.73336 1085.45217 0.33867 0.00018415 2.1144 0.0011497 2.4531 0.0013338 544.2346991992756 146.37 0.35489 146.37 146.18 146.54 0 11 9 2 0 0 0 0.75112 1 29241 29241 3.9444 0 1 1472000 30060 2096 20102 20111 29612 29612 -0.08714132676800546 MENQIYAIP 9 Oxidation (M) _M(Oxidation (M))ENQIYAIP_ M(1)ENQIYAIP M(42)ENQIYAIP 0 0 1 ENSG00000159399|ENST00000290573|HK2;ENST00000472302.1_1_2:75081464-75094914:+|nuORF ENSG00000159399|ENST00000290573|HK2 ENSG00000159399|ENST00000290573|HK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.788330078125 2 547.762975 1093.5114 0.36523 0.00020006 0.20753 0.00011368 0.57276 0.00031374 547.7628369356481 117.55 0.98538 113.05 112.54 113.53 -4.502 40 27 2 0 0 0 0.16539 1 23142 23142 41.956 12.874 1 1302300 30061 5206 20103 20112 29613 29613 81 -0.031619133909771335 MENQKVKK 8 Unmodified _MENQKVKK_ 0 0 0 ENSG00000165105|ENST00000376447|RASEF ENSG00000165105|ENST00000376447|RASEF ENSG00000165105|ENST00000376447|RASEF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 502.8204345703125 2 502.781502 1003.54845 0.17715 8.9067E-05 3.8683 0.0019449 4.0455 0.002034 502.7812948333874 144.5 0.17546 139.55 139.45 139.62 -4.9445 7 4 2 0 0 0 0.74398 1 27910 27910 7.9102 0.62092 1 1022000 30062 5597 20104 20113 29614 29614 0.04681802945447089 MENRNLHSP 9 Unmodified _MENRNLHSP_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 366.8443603515625 3 366.510069 1096.50838 -1.7283 -0.00063344 1.6401 0.00060113 -0.088153 -3.2309E-05 366.5106493100494 19.251 0.76389 17.616 17.217 17.981 -1.6351 25 21 2 0 0 0 0.60489 1 2900 2900 2.4985 1.169 1 313310 30063 2773 20105 20114 29615 29615 -0.03601743725130291 MENRPSVQA 9 Oxidation (M) _M(Oxidation (M))ENRPSVQA_ M(1)ENRPSVQA M(90)ENRPSVQA 0 0 1 nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7000732421875 2 524.248023 1046.48149 0.1524 7.9896E-05 -0.12768 -6.6936E-05 0.024721 1.296E-05 524.2481479537645 20.258 0.88887 20.258 19.928 20.816 0 84 24 5 0 0 0 0.044345 1 3328 3328 90.135 61.648 1 12897000 30064 5259 20106 20115 29616 29616 82 -0.03988852336306081 MENRPSVQA 9 Oxidation (M) _M(Oxidation (M))ENRPSVQA_ M(1)ENRPSVQA M(53)ENRPSVQA 0 0 1 nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.701416015625 2 524.248023 1046.48149 0.35589 0.00018657 0.022368 1.1726E-05 0.37826 0.0001983 524.2483010772263 21.749 1.063 20.275 19.806 20.869 -1.4742 78 29 4 0 0 0 0.14943 1 3697 3697 53.404 29.383 1 7786800 30065 5259 20106 20115 29617 29617 82 -0.03988852336306081 MENRPSVQA 9 Oxidation (M) _M(Oxidation (M))ENRPSVQA_ 0 0 1 nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.248023 1046.48149 -0.58874 -0.00030864 0.65764 0.00034477 0.068901 3.6121E-05 524.2485723754472 21.961 1.1015 20.24 19.85 20.952 -1.7211 -0.012038 0.00031769 NaN 90.135 87 31 4 NaN NaN NaN NaN 0 NaN NaN 0 6726200 30066 5259 20106 20115 82 -0.03988852336306081 MENSLPAKVP 10 Unmodified _MENSLPAKVP_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;GIGYF2|p.L491Ffs*6|1|0.38|ENSG00000204120|chr2:232794934-232794935|-/T|frameshift_variant;GIGYF2|p.L631*|1|0.4|ENSG00000204120|chr2:232809801-232809801|T/-|frameshift_variant;GIGYF2|p.L640Wfs*27|1|0.5|ENSG00000204120|chr2:232811261-232811261|T/-|frameshift_variant;GIGYF2|p.A735Yfs*90|1|0.05|ENSG00000204120|chr2:232815731-232815732|-/TACACACATG|frameshift_variant nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7880249023438 2 543.286617 1084.55868 0.32481 0.00017646 -0.38872 -0.00021119 -0.063909 -3.4721E-05 543.2864603052546 116.69 1.2941 116.69 115.98 117.27 0 90 36 3 0 0 0 0.44731 1 22979 22979 27.629 0 1 10408000 30067 7561 20107 20116 29618 29618 0.019783658800179182 MENTFVSK 8 Unmodified _MENTFVSK_ 0 0 0 nc|ENSG00000138346|P51530-4|DNA2;nc|ENSG00000138346|P51530-2|DNA2;DNA2|p.L697Ffs*28|1|0.35|ENSG00000138346|chr10:68430553-68430554|-/A|frameshift_variant;nc|ENSG00000138346|P51530-3|DNA2;ENSG00000138346|ENST00000358410|DNA2 nc|ENSG00000138346|P51530-4|DNA2 nc|ENSG00000138346|P51530-4|DNA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7350158691406 2 478.23131 954.448068 -0.042843 -2.0489E-05 0.69599 0.00033284 0.65315 0.00031236 478.23143048341103 41.066 0.38298 38.526 38.313 38.696 -2.5398 17 10 2 0 0 0 0.67861 1 7360 7360 17.113 0.1706 1 620480 30068 12352 20108 20117 29619 29619 -0.030978541082163247 MENVATIAA 9 Unmodified _MENVATIAA_ 0 0 0 ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11;ENST00000479837.1_1_1:55062957-55065089:+|nuORF ENST00000498228.1_1_1:55014277-55063089:+|nuORF ENST00000498228.1_1_1:55014277-55063089:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2431335449219 2 460.23131 918.448068 -0.11613 -5.3447E-05 0.6716 0.00030909 0.55547 0.00025565 460.23177933553524 84.424 0.65892 80.76 80.433 81.092 -3.6641 28 18 2 0 0 0 0.64397 1 16499 16499 31.268 2.7815 1 1088000 30069 5327 20109 20118 29620 29620 -0.014418541082250158 MENVLKDL 8 Unmodified _MENVLKDL_ 0 0 0 REV__TDRKH|p.L436Ffs*3|1|0.26|ENSG00000182134|chr1:151775518-151775519|-/A|frameshift_variant REV__TDRKH|p.L436Ffs*3|1|0.26|ENSG00000182134|chr1:151775518-151775519|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.788818359375 2 481.254785 960.495018 -0.038298 -1.8431E-05 0.56838 0.00027354 0.53009 0.00025511 481.2550258070866 56.583 0.56422 53.407 53.187 53.751 -3.1761 22 15 2 0 0 0 0.64512 1 10569 10569 19.257 2.1441 1 2399300 + 30070 18758 20110 20119 29621 29621 0.01319005442917387 MENYLTNL 8 Unmodified _MENYLTNL_ 0 0 0 tr|U7SJF6|U7SJF6_FUSNUV-typeH+-transportingATPasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02123PE=3SV=1 tr|U7SJF6|U7SJF6_FUSNUV-typeH+-transportingATPasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02123PE=3SV=1 tr|U7SJF6|U7SJF6_FUSNUV-typeH+-transportingATPasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02123PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.999267578125 3 333.160154 996.458632 NaN NaN NaN NaN NaN NaN NaN 97.774 1 93.854 93.354 94.354 -3.9194 0 0 0 0.21486 1 18766 18766 1.8442 0 1 30071 25940 20111 20120 29622 29622 -0.03973871453808897 MEPGDQGLSP 10 Oxidation (M) _M(Oxidation (M))EPGDQGLSP_ M(1)EPGDQGLSP M(56)EPGDQGLSP 0 0 1 nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:182910742-182941939:-|nuORF nc|ENSG00000053524|Q86YR7-4|MCF2L2 nc|ENSG00000053524|Q86YR7-4|MCF2L2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6923217773438 2 523.726589 1045.43863 NaN NaN NaN NaN NaN NaN NaN 97.85 1 97.85 97.35 98.35 0 0 0 0 0.13184 1 19177 19177 55.503 13.547 1 30072 1256 20112 20121 29623 29623 9 -0.08227667184405618 MEPGKVLDTP 10 Unmodified _MEPGKVLDTP_ 0 0 0 ENST00000540664.5_1_10:98714714-98714867:+|nuORF ENST00000540664.5_1_10:98714714-98714867:+|nuORF ENST00000540664.5_1_10:98714714-98714867:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7788696289062 2 543.778625 1085.5427 NaN NaN NaN NaN NaN NaN NaN 130.04 1 125.2 124.7 125.7 -4.8355 0 0 0 0.21796 1 24967 24967 24.991 2.2547 1 30073 11072 20113 20122 29624 29624 0.003346596430901627 MEPRTGDAAD 10 Unmodified _MEPRTGDAAD_ 0 0 0 ENSG00000269313|ENST00000595224|MAGIX ENSG00000269313|ENST00000595224|MAGIX ENSG00000269313|ENST00000595224|MAGIX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2758178710938 2 531.729663 1061.44477 0.30953 0.00016459 0.61423 0.00032661 0.92376 0.00049119 531.7297430923796 118.78 0.70722 114.28 113.9 114.61 -4.502 51 19 4 0 0 0 0.25854 1 23396 23396 19.362 17.62 1 6485400 30074 7998 20114 20123 29625 29625 -0.08349148952879659 MEPRTGDAAD 10 Unmodified _MEPRTGDAAD_ 0 0 0 ENSG00000269313|ENST00000595224|MAGIX ENSG00000269313|ENST00000595224|MAGIX ENSG00000269313|ENST00000595224|MAGIX MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 531.729663 1061.44477 0.078377 4.1675E-05 0.74197 0.00039453 0.82034 0.0004362 531.730016474036 113.97 0.77978 113.97 113.59 114.37 0 -0.13121 0.00051897 NaN 19.362 48 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6798600 30075 7998 20114 20123 -0.08349148952879659 MEPRTGDAAD 10 Unmodified _MEPRTGDAAD_ 0 0 0 ENSG00000269313|ENST00000595224|MAGIX ENSG00000269313|ENST00000595224|MAGIX ENSG00000269313|ENST00000595224|MAGIX MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 531.729663 1061.44477 0.80658 0.00042888 -0.16609 -8.8315E-05 0.64049 0.00034057 531.7294990998424 118.74 0.78689 114.13 113.78 114.56 -4.6106 0.031561 -0.00044671 NaN 19.362 43 21 3 NaN NaN NaN NaN 0 NaN NaN 0 4321600 30076 7998 20114 20123 -0.08349148952879659 MEPRTGDAAD 10 Unmodified _MEPRTGDAAD_ 0 0 0 ENSG00000269313|ENST00000595224|MAGIX ENSG00000269313|ENST00000595224|MAGIX ENSG00000269313|ENST00000595224|MAGIX MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 531.729663 1061.44477 0.47423 0.00025216 -0.010223 -5.4356E-06 0.46401 0.00024673 531.7295293101866 118.42 0.67329 114.01 113.75 114.42 -4.4088 -0.084256 -0.00028095 NaN 19.362 34 18 2 NaN NaN NaN NaN 0 NaN NaN 0 4929800 30077 7998 20114 20123 -0.08349148952879659 MEPRVAES 8 Unmodified _MEPRVAES_ 0 0 0 ENSG00000255855|ENST00000545950|KDM4F ENSG00000255855|ENST00000545950|KDM4F ENSG00000255855|ENST00000545950|KDM4F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.2264709472656 3 306.816499 917.427666 -0.93175 -0.00028588 -1.5106 -0.00046347 -2.4423 -0.00074934 306.81527338287555 6.9003 0.17859 6.2212 6.0956 6.2742 -0.67913 7 4 2 0 0 0 1.0271 1 556 556 1.6526 1.2519 1 38276 30078 7934 20115 20124 29626 29626 -0.03435024768020867 MEPSKISGL 9 Unmodified _MEPSKISGL_ 0 0 0 ENST00000473577.1_1_13:30091265-30093642:-|nuORF;ENSG00000139514|ENST00000380752|SLC7A1 ENST00000473577.1_1_13:30091265-30093642:-|nuORF ENST00000473577.1_1_13:30091265-30093642:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2549743652344 2 481.254785 960.495018 -0.12099 -5.8229E-05 0.54791 0.00026368 0.42692 0.00020546 481.25499327573965 56.283 0.48399 53.388 53.166 53.65 -2.8944 21 13 2 0 0 0 0.42844 1 10754 10754 24.021 3.5669 1 4562100 30079 4250 20116 20125 29627 29627 0.013190054429401243 MEQDERGP 8 Unmodified _MEQDERGP_ 0 0 0 ENSG00000119614|ENST00000261980|VSX2 ENSG00000119614|ENST00000261980|VSX2 ENSG00000119614|ENST00000261980|VSX2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2508239746094 2 481.205824 960.397095 NaN NaN NaN NaN NaN NaN NaN 53.067 1 49.971 49.471 50.471 -3.0954 0 0 0 0.21486 1 9806 9806 5.7604 0.52976 1 30080 3088 20117 20126 29628 29628 -0.08468803153061799 MEQDPDVAVTV 11 Unmodified _MEQDPDVAVTV_ 0 0 0 NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2797241210938 2 602.281728 1202.5489 NaN NaN NaN NaN NaN NaN NaN 94.584 1 94.584 94.084 95.084 0 0 0 0 0.19646 1 18522 18522 19.626 7.9857 1 30081 6270 20118 20127 29629 29629 -0.044268669160373975 MEQDPDVAVTV 11 Unmodified _MEQDPDVAVTV_ 0 0 0 NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2984008789062 2 602.281728 1202.5489 NaN NaN NaN NaN NaN NaN NaN 98.702 1 94.569 94.069 95.069 -4.1326 0 0 0 0.19646 1 19382 19382 19.626 7.3853 1 30082 6270 20118 20127 29630 29630 -0.044268669160373975 MEQDPDVAVTV 11 Unmodified _MEQDPDVAVTV_ 0 0 0 NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2814331054688 2 602.281728 1202.5489 NaN NaN NaN NaN NaN NaN NaN 99.034 1 94.765 94.265 95.265 -4.2692 0 0 0 0.20951 1 18932 18932 16.566 4.9256 1 30083 6270 20118 20127 29631 29631 -0.044268669160373975 MEQDPDVAVTV 11 Unmodified _MEQDPDVAVTV_ 0 0 0 NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2819213867188 2 602.281728 1202.5489 NaN NaN NaN NaN NaN NaN NaN 98.637 1 94.68 94.18 95.18 -3.9564 0 0 0 0.22632 1 18931 18931 3.0723 3.0409 1 30084 6270 20118 20127 29632 29632 -0.044268669160373975 MEQDPDVAVTV 11 Unmodified _MEQDPDVAVTV_ 0 0 0 NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2819213867188 2 602.281728 1202.5489 NaN NaN NaN NaN NaN NaN NaN 98.664 1 94.708 94.208 95.208 -3.9564 0 0 0 0.20398 1 18936 18936 17.863 0.92087 1 30085 6270 20118 20127 29633 29633 -0.044268669160373975 MEQELAHAV 9 Oxidation (M) _M(Oxidation (M))EQELAHAV_ M(1)EQELAHAV M(110)EQELAHAV 0 0 1 nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD nc|ENSG00000077044|Q16760-2|DGKD nc|ENSG00000077044|Q16760-2|DGKD MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2808837890625 2 522.244949 1042.47534 0.40317 0.00021055 -0.65206 -0.00034053 -0.24889 -0.00012998 522.2445473021091 41.848 0.73822 41.848 41.412 42.15 0 46 20 3 0 0 0 0.0088712 3 7773 7770;7773;7872 106.94 56.085 1 5321900 30086 1549 20119 20128 29634;29635;29636 29635 13 -0.04419370567848091 MEQELAHAV 9 Oxidation (M) _M(Oxidation (M))EQELAHAV_ M(1)EQELAHAV M(110)EQELAHAV 0 0 1 nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD nc|ENSG00000077044|Q16760-2|DGKD nc|ENSG00000077044|Q16760-2|DGKD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.281982421875 2 522.244949 1042.47534 -0.2567 -0.00013406 -0.15044 -7.8566E-05 -0.40714 -0.00021263 522.2447639505709 44.497 0.83897 41.707 41.22 42.059 -2.79 35 18 2 0 0 0 0.0088712 4 8342 8342;8396;8399;8422 106.94 60.919 1 3577800 30087 1549 20119 20128 29637;29638;29639;29640 29637 13 -0.04419370567848091 MEQELAHAV 9 Oxidation (M) _M(Oxidation (M))EQELAHAV_ M(1)EQELAHAV M(77)EQELAHAV 0 0 1 nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD nc|ENSG00000077044|Q16760-2|DGKD nc|ENSG00000077044|Q16760-2|DGKD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2630004882812 2 522.244949 1042.47534 -0.73554 -0.00038413 0.18705 9.7685E-05 -0.5485 -0.00028645 522.2451239955143 44.558 0.79928 41.792 41.286 42.085 -2.7661 42 18 3 0 0 0 0.037522 1 8108 8108 76.825 42.423 1 2784300 30088 1549 20119 20128 29641 29641 13 -0.04419370567848091 MEQFVKKY 8 Unmodified _MEQFVKKY_ 0 0 0 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 359.1908874511719 3 358.188044 1071.5423 -0.39313 -0.00014082 0.12658 4.5339E-05 -0.26656 -9.5477E-05 358.1880708129236 50.027 0.73704 47.146 46.763 47.5 -2.8811 55 20 4 0 0 0 8448 1 9492 9492 26.884 12.045 1 7443800 30089 3911 20120 20129 29642 29642 0.009392847139224614 MEQFVKKY 8 Unmodified _MEQFVKKY_ 0 0 0 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 358.188044 1071.5423 0.10619 3.8037E-05 0.017543 6.2835E-06 0.12373 4.432E-05 358.18796997093733 47.104 0.74164 47.104 46.729 47.47 0 -0.025561 -0.00017822 NaN 26.884 57 20 4 NaN NaN NaN NaN 0 NaN NaN 0 7445700 30090 3911 20120 20129 0.009392847139224614 MEQFVKKY 8 Unmodified _MEQFVKKY_ 0 0 0 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 358.188044 1071.5423 0.038784 1.3892E-05 0.0011715 4.1962E-07 0.039955 1.4311E-05 358.1880152519774 50.178 0.67255 47.179 46.798 47.471 -2.999 0.048933 -0.00019581 NaN 26.884 52 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6497100 30091 3911 20120 20129 0.009392847139224614 MEQFVKKY 8 Unmodified _MEQFVKKY_ 0 0 0 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 358.188044 1071.5423 -0.75717 -0.00027121 0.72904 0.00026113 -0.028127 -1.0075E-05 358.18826626096427 50.097 0.70367 47.09 46.705 47.408 -3.0068 -0.039591 0.00058634 NaN 26.884 52 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6442700 30092 3911 20120 20129 0.009392847139224614 MEQILKEA 8 Unmodified _MEQILKEA_ 0 0 0 ENST00000459805.5_1_1:155184084-155184162:-|nuORF ENST00000459805.5_1_1:155184084-155184162:-|nuORF ENST00000459805.5_1_1:155184084-155184162:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2547912597656 2 481.254785 960.495018 -0.0053869 -2.5925E-06 0.22303 0.00010734 0.21765 0.00010474 481.2548690568283 53.465 0.49556 53.465 53.213 53.709 0 22 13 2 0 0 0 0.64512 1 10151 10151 19.257 0 1 2518700 30093 10048 20121 20130 29643 29643 0.013190054429287557 MEQILKEA 8 Unmodified _MEQILKEA_ 0 0 0 ENST00000459805.5_1_1:155184084-155184162:-|nuORF ENST00000459805.5_1_1:155184084-155184162:-|nuORF ENST00000459805.5_1_1:155184084-155184162:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2547302246094 2 481.254785 960.495018 -0.038298 -1.8431E-05 0.56838 0.00027354 0.53009 0.00025511 481.2550258070866 56.583 0.56422 53.407 53.187 53.751 -3.1761 22 15 2 0 0 0 0.66247 1 10505 10505 18.146 2.8979 1 2399300 30094 10048 20121 20130 29644 29644 0.013190054429287557 MEQLLQEA 8 Unmodified _MEQLLQEA_ 0 0 0 SPZ1|p.Q290Lfs*9|1|0.03|ENSG00000164299|chr5:80321078-80321079|-/TTTTTTGCTT|frameshift_variant;ENSG00000164299|ENST00000296739|SPZ1 SPZ1|p.Q290Lfs*9|1|0.03|ENSG00000164299|chr5:80321078-80321079|-/TTTTTTGCTT|frameshift_variant SPZ1|p.Q290Lfs*9|1|0.03|ENSG00000164299|chr5:80321078-80321079|-/TTTTTTGCTT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2367248535156 2 481.236593 960.458632 0.12587 6.0571E-05 -0.021567 -1.0379E-05 0.1043 5.0192E-05 481.23683899849163 89.317 1.0104 85.539 85.068 86.078 -3.7779 57 28 3 0 0 0 0.54916 1 17126 17126 25.399 1.3787 1 1474400 30095 5529 20122 20131 29645 29645 -0.02317871453783482 MEQQAQRPSP 10 Unmodified _MEQQAQRPSP_ 0 0 0 ENST00000562623.1_1_16:50300548-50321995:+|nuORF;ENST00000569265.1_2_16:50313527-50321995:+|nuORF ENST00000562623.1_1_16:50300548-50321995:+|nuORF ENST00000562623.1_1_16:50300548-50321995:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 585.796630859375 2 586.279854 1170.54516 0.030847 1.8085E-05 0.32976 0.00019333 0.36061 0.00021142 586.2801137815411 19.615 0.76862 18.29 17.895 18.664 -1.3251 50 21 3 0 0 0 0.83236 1 2953 2953 17.443 8.6972 1 2735400 30096 11321 20123 20132 29646 29646 -0.03329491899216919 MEQQAQRPSP 10 Unmodified _MEQQAQRPSP_ 0 0 0 ENST00000562623.1_1_16:50300548-50321995:+|nuORF;ENST00000569265.1_2_16:50313527-50321995:+|nuORF ENST00000562623.1_1_16:50300548-50321995:+|nuORF ENST00000562623.1_1_16:50300548-50321995:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 586.279854 1170.54516 0.276 0.00016182 0.061417 3.6007E-05 0.33742 0.00019782 586.2799385923444 18.156 0.70806 18.156 17.803 18.511 0 -0.10127 -1.2637E-05 NaN 17.443 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3219700 30097 11321 20123 20132 -0.03329491899216919 MEQQAQRPSP 10 Unmodified _MEQQAQRPSP_ 0 0 0 ENST00000562623.1_1_16:50300548-50321995:+|nuORF;ENST00000569265.1_2_16:50313527-50321995:+|nuORF ENST00000562623.1_1_16:50300548-50321995:+|nuORF ENST00000562623.1_1_16:50300548-50321995:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 586.279854 1170.54516 0.49931 0.00029274 -0.1176 -6.8944E-05 0.38172 0.00022379 586.2797770610877 19.723 0.83975 18.327 17.848 18.688 -1.3966 0.068825 -0.00022254 NaN 17.443 55 23 3 NaN NaN NaN NaN 0 NaN NaN 0 3025100 30098 11321 20123 20132 -0.03329491899216919 MEQQQAYRP 9 Unmodified _MEQQQAYRP_ 0 0 0 ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1 ENST00000594207.1_1_19:41774132-41786840:+|nuORF ENST00000594207.1_1_19:41774132-41786840:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3196411132812 2 575.769123 1149.52369 0.34432 0.00019825 1.2798 0.00073689 1.6242 0.00093514 575.7690233804517 27.825 0.76175 27.825 27.49 28.252 0 60 21 5 0 0 0 0.04795 1 4968 4968 71.922 22.368 1 2071300 30099 2296 20124 20133 29647 29647 -0.0450887692793458 MEQQQAYRP 9 Unmodified _MEQQQAYRP_ 0 0 0 ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1 ENST00000594207.1_1_19:41774132-41786840:+|nuORF ENST00000594207.1_1_19:41774132-41786840:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3218994140625 2 575.769123 1149.52369 0.51423 0.00029608 -0.25948 -0.0001494 0.25475 0.00014668 575.7689333475918 30.145 0.87093 28.028 27.528 28.399 -2.1167 56 24 3 0 0 0 0.034893 4 5426 5422;5426;5474;5478 78.06 31.207 1 1932700 30100 2296 20124 20133 29648;29649;29650;29651 29649 -0.0450887692793458 MEQQQAYRP 9 Unmodified _MEQQQAYRP_ 0 0 0 ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1 ENST00000594207.1_1_19:41774132-41786840:+|nuORF ENST00000594207.1_1_19:41774132-41786840:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.315185546875 2 575.769123 1149.52369 0.43872 0.0002526 -0.20754 -0.00011949 0.23119 0.00013311 575.7689292180983 29.983 0.79898 28.09 27.617 28.416 -1.8928 56 22 3 0 0 0 0.19171 2 5048 5029;5048 38.176 16.639 1 2363600 30101 2296 20124 20133 29652;29653 29653 -0.0450887692793458 MEQQQAYRP 9 Unmodified _MEQQQAYRP_ 0 0 0 ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1 ENST00000594207.1_1_19:41774132-41786840:+|nuORF ENST00000594207.1_1_19:41774132-41786840:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.323486328125 2 575.769123 1149.52369 0.55781 0.00032117 -0.15415 -8.8754E-05 0.40366 0.00023242 575.7689323443307 30.149 0.80443 28.075 27.59 28.394 -2.0743 55 22 3 0 0 0 0.024872 3 5135 5135;5203;5206 87.258 37.325 1 1813700 30102 2296 20124 20133 29654;29655;29656 29654 -0.0450887692793458 MEQVLQTL 8 Unmodified _MEQVLQTL_ 0 0 0 REV__SNAPC4|p.V366I|1|0.46|ENSG00000165684|chr9:136388471-136388471|C/T|missense_variant REV__SNAPC4|p.V366I|1|0.46|ENSG00000165684|chr9:136388471-136388471|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2549743652344 2 481.254785 960.495018 -0.038298 -1.8431E-05 0.56838 0.00027354 0.53009 0.00025511 481.2550258070866 56.583 0.56422 53.407 53.187 53.751 -3.1761 22 15 2 0 0 0 0.5707 1 10559 10559 24.021 0 1 2399300 + 30103 17794 20125 20134 29657 29657 0.013190054429401243 MEQVVFKY 8 Unmodified _MEQVVFKY_ 0 0 0 ACTR3B-JMJD1C|1|fusion;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B ACTR3B-JMJD1C|1|fusion ACTR3B-JMJD1C|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2653198242188 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 112.15 1 107.62 107.12 108.12 -4.5259 0 0 0 0.16809 1 21528 21528 26.884 22.168 1 30104 44 20126 20135 29658 29658 -0.0038040417739466648 MERHLTWI 8 Unmodified _MERHLTWI_ 0 0 0 ENST00000338779.10_1_16:70697400-70697583:-|nuORF ENST00000338779.10_1_16:70697400-70697583:-|nuORF ENST00000338779.10_1_16:70697400-70697583:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7697143554688 2 543.281669 1084.54878 0.20556 0.00011168 -1.6248 -0.00088273 -1.4192 -0.00077105 543.2808204934466 98.326 1.013 94.057 93.498 94.511 -4.2692 40 28 2 0 0 0 0.56049 1 18878 18878 24.674 1.5255 1 1635000 30105 8834 20127 20136 29659 29659 0.009892226652937097 MERIGEEV 8 Unmodified _MERIGEEV_ 0 0 0 ENSG00000133169|ENST00000372728|BEX1;ENSG00000133134|ENST00000372677|BEX2;nc|ENSG00000133134|Q9BXY8-2|BEX2 ENSG00000133169|ENST00000372728|BEX1;nc|ENSG00000133134|Q9BXY8-2|BEX2 nc|ENSG00000133134|Q9BXY8-2|BEX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25494384765625 2 481.734217 961.453881 0.10426 5.0228E-05 -0.026458 -1.2746E-05 0.077806 3.7482E-05 481.73420837588776 56.724 0.35309 53.535 53.441 53.794 -3.1895 13 9 2 0 0 0 0.65178 1 10521 10521 33.445 18.607 1 974150 30106 3789;12331 20128 20137 29660 29660 -0.02838755596530973 MERIGEEV 8 Unmodified _MERIGEEV_ 0 0 0 ENSG00000133169|ENST00000372728|BEX1;ENSG00000133134|ENST00000372677|BEX2;nc|ENSG00000133134|Q9BXY8-2|BEX2 ENSG00000133169|ENST00000372728|BEX1;nc|ENSG00000133134|Q9BXY8-2|BEX2 nc|ENSG00000133134|Q9BXY8-2|BEX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.788818359375 2 481.734217 961.453881 -0.041656 -2.0067E-05 0.81374 0.00039201 0.77209 0.00037194 481.73427008002 56.867 0.45117 53.691 53.37 53.821 -3.1761 17 12 2 0 0 0 0.32024 1 10569 10569 55.503 7.7541 1 1180900 30107 3789;12331 20128 20137 29661 29661 -0.02838755596530973 MERRRERRERR 11 Unmodified _MERRRERRERR_ 0 0 0 ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7872924804688 3 543.969478 1628.88661 NaN NaN NaN NaN NaN NaN NaN 155.37 1 155.37 154.87 155.87 0 0 0 0 0.22632 1 31149 31149 0.026206 0 1 30108 5253 20129 20138 29662 29662 0.09731793914215814 MERRRERRERR 11 Unmodified _MERRRERRERR_ 0 0 0 ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7810668945312 3 543.969478 1628.88661 -0.4352 -0.00023673 -0.3645 -0.00019828 -0.7997 -0.00043501 543.9692727205075 12.233 0.17493 11.224 11.139 11.314 -1.0098 5 4 2 0 0 0 0.82503 1 1670 1670 0.08335 0 1 1598300 30109 5253 20129 20138 29663 29663 0.09731793914215814 MERRRERRERR 11 Unmodified _MERRRERRERR_ 0 0 0 ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7831420898438 3 543.969478 1628.88661 -0.19409 -0.00010558 0.39623 0.00021554 0.20214 0.00010996 544.3034121595529 107.07 0.13867 102.75 102.68 102.82 -4.32 5 3 2 0 0 0 0.66163 1 21093 21093 0.026206 0 1 519230 30110 5253 20129 20138 29664 29664 0.09731793914215814 MERRRERRERR 11 Unmodified _MERRRERRERR_ 0 0 0 ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7819213867188 3 543.969478 1628.88661 0.448 0.0002437 1.5586 0.00084784 2.0066 0.0010915 544.3055330386997 151.36 0.146 146.18 146.07 146.21 -5.1759 5 3 2 0 0 0 0.89084 1 29325 29325 0.00056442 0 1 1759500 30111 5253 20129 20138 29665 29665 0.09731793914215814 MERRRERRERR 11 Unmodified _MERRRERRERR_ 0 0 0 ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 543.969478 1628.88661 -0.65515 -0.00035638 -0.4461 -0.00024267 -1.1012 -0.00059904 543.9692773293847 12.189 0.13373 11.06 10.976 11.109 -1.1293 -0.074722 -0.00039141 NaN 0.08335 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 683770 30112 5253 20129 20138 0.09731793914215814 MERRRERRERR 11 Unmodified _MERRRERRERR_ 0 0 0 ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 543.969478 1628.88661 -1.5224 -0.00082814 0.60765 0.00033054 -0.91475 -0.0004976 543.969656011872 12.241 0.1366 11.12 11.034 11.171 -1.1206 -0.014313 0.0013282 NaN 0.08335 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 725930 30113 5253 20129 20138 0.09731793914215814 MESEGTLAWQ 10 Unmodified _MESEGTLAWQ_ 0 0 0 REV__ENST00000376414.4_1_13:99948080-99948128:-|nuORF REV__ENST00000376414.4_1_13:99948080-99948128:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3361206054688 2 576.255514 1150.49647 NaN NaN NaN NaN NaN NaN NaN 57.713 1 54.805 54.305 55.305 -2.9083 0 0 0 0.22583 1 11074 11074 13.906 1.3745 1 + 30114 21077 20130 20139 29666 29666 -0.07275405258974388 MESERVAT 8 Unmodified _MESERVAT_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.89739990234375 3 308.148137 921.422581 NaN NaN NaN NaN NaN NaN NaN 104.05 1 104.05 103.55 104.55 0 0 0 0 0.21486 1 20451 20451 0.40072 0 1 30115 7760 20131 20140 29667 29667 -0.04127328630636384 MESMEEYE 8 Unmodified _MESMEEYE_ 0 0 0 REV__nc|ENSG00000156313|Q92834-3|RPGR REV__nc|ENSG00000156313|Q92834-3|RPGR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7009887695312 2 524.185908 1046.35726 -0.1545 -8.0989E-05 -3.8412 -0.0020135 -3.9957 -0.0020945 524.1827471753496 129.82 0.1767 125.19 125.09 125.26 -4.6314 6 4 2 0 0 0 1.0147 1 25575 25575 9.3474 7.5032 1 1230700 + 30116 17256 20132 20141 29668 29668 -0.16406110938646634 MESMLISGY 9 Oxidation (M) _MESM(Oxidation (M))LISGY_ M(0.185)ESM(0.815)LISGY M(-6.4)ESM(6.4)LISGY 0 0 1 TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENSG00000120438|ENST00000321394|TCP1 TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6929931640625 2 523.730286 1045.44602 0.7734 0.00040505 -0.73466 -0.00038476 0.038735 2.0287E-05 523.7298695133147 106.46 0.58852 102.37 102.12 102.71 -4.0913 37 16 3 0 0 0 0.10297 1 20486 20486 54.774 35.517 2 4471500 30117 3134 20133 20142 29669 29669 44 -0.0748865090831714 MESNGKYIT 9 Unmodified _MESNGKYIT_ 0 0 0 GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant;CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;ENST00000586392.1_1_19:34884680-34890938:+|nuORF GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2664184570312 2 521.747324 1041.4801 0.23002 0.00012001 0.56415 0.00029434 0.79416 0.00041435 521.747104629395 30.627 0.40873 30.627 30.417 30.825 0 31 11 4 0 0 0 0.16539 1 5517 5517 41.956 11.319 1 2162900 + 30118 698 20134 20143 29670 29670 -0.03898486425077863 MESNGKYIT 9 Unmodified _MESNGKYIT_ 0 0 0 GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant;CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;ENST00000586392.1_1_19:34884680-34890938:+|nuORF GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2669677734375 2 521.747324 1041.4801 -0.12972 -6.7682E-05 0.78548 0.00040982 0.65576 0.00034214 521.7473807282045 32.845 0.41954 30.614 30.399 30.819 -2.2305 35 11 4 0 0 0 0.43201 1 6016 6016 23.801 5.6547 1 2665200 + 30119 698 20134 20143 29671 29671 -0.03898486425077863 MESNGKYIT 9 Unmodified _MESNGKYIT_ 0 0 0 GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant;CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;ENST00000586392.1_1_19:34884680-34890938:+|nuORF GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.258056640625 2 521.747324 1041.4801 0.48698 0.00025408 0.45297 0.00023633 0.93994 0.00049041 521.7471333808636 32.801 0.49171 30.64 30.371 30.863 -2.1607 37 13 4 0 0 0 0.095704 1 5677 5677 57.249 21.122 1 2337200 + 30120 698 20134 20143 29672 29672 -0.03898486425077863 MESPSVAQA 9 Unmodified _MESPSVAQA_ 0 0 0 ENST00000591281.5_1_16:4767458-4779992:-|nuORF ENST00000591281.5_1_16:4767458-4779992:-|nuORF ENST00000591281.5_1_16:4767458-4779992:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2354431152344 2 460.213117 918.411682 0.47738 0.0002197 -0.61974 -0.00028521 -0.14236 -6.5516E-05 460.21284737158373 43.716 0.7622 43.716 43.295 44.057 0 42 21 3 0 0 0 0.071377 1 8153 8153 64.236 14.303 1 1098600 30121 11616 20135 20144 29673 29673 -0.05078731004925885 MESPSVAQA 9 Unmodified _MESPSVAQA_ 0 0 0 ENST00000591281.5_1_16:4767458-4779992:-|nuORF ENST00000591281.5_1_16:4767458-4779992:-|nuORF ENST00000591281.5_1_16:4767458-4779992:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23052978515625 2 460.213117 918.411682 -0.1232 -5.67E-05 -0.14297 -6.5797E-05 -0.26618 -0.0001225 460.2130499411959 46.66 0.65807 43.819 43.486 44.144 -2.8409 40 18 3 0 0 0 0.057505 1 8820 8820 68.081 18.148 1 1868100 30122 11616 20135 20144 29674 29674 -0.05078731004925885 MESRSVAQA 9 Unmodified _MESRSVAQA_ 0 0 0 ENSG00000167637|ENST00000618787|ZNF283;ENST00000481374.1_1_1:76216171-76216535:+|nuORF;AluSg7_dup3470|chr7:92112548-92112847:+|1.1476481431393448|0.0120808203020236|6.57|479.0|16|2|anti-sense;ENST00000545748.5_1_12:52431545-52431905:+|nuORF;ENST00000548942.1_1_12:50527593-50529244:-|nuORF;ENST00000435930.1_1_9:139731025-139731532:+|nuORF;ENST00000380189.8_1_12:50527593-50531570:-|nuORF;nc|ENSG00000261832|Q13286-5|CLN3;ZNF283|p.W330Gfs*10|3|0.41|ENSG00000167637|chr19:43847583-43847583|T/-|frameshift_variant;ENST00000481865.5_1_3:195611475-195611958:-|nuORF ENSG00000167637|ENST00000618787|ZNF283;ENST00000481865.5_1_3:195611475-195611958:-|nuORF ENST00000481865.5_1_3:195611475-195611958:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2551574707031 2 489.737291 977.460029 0.12649 6.1947E-05 -0.69169 -0.00033875 -0.5652 -0.0002768 489.7369228828545 17.761 0.50124 17.761 17.589 18.09 0 19 13 2 0 0 0 0.22356 1 2828 2828 49.527 16.082 1 4074000 30123 5827;10384 20136 20145 29675 29675 -0.029602373650277514 MESRSVAQA 9 Unmodified _MESRSVAQA_ 0 0 0 ENSG00000167637|ENST00000618787|ZNF283;ENST00000481374.1_1_1:76216171-76216535:+|nuORF;AluSg7_dup3470|chr7:92112548-92112847:+|1.1476481431393448|0.0120808203020236|6.57|479.0|16|2|anti-sense;ENST00000545748.5_1_12:52431545-52431905:+|nuORF;ENST00000548942.1_1_12:50527593-50529244:-|nuORF;ENST00000435930.1_1_9:139731025-139731532:+|nuORF;ENST00000380189.8_1_12:50527593-50531570:-|nuORF;nc|ENSG00000261832|Q13286-5|CLN3;ZNF283|p.W330Gfs*10|3|0.41|ENSG00000167637|chr19:43847583-43847583|T/-|frameshift_variant;ENST00000481865.5_1_3:195611475-195611958:-|nuORF ENSG00000167637|ENST00000618787|ZNF283;ENST00000481865.5_1_3:195611475-195611958:-|nuORF ENST00000481865.5_1_3:195611475-195611958:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25531005859375 2 489.737291 977.460029 0.17548 8.5937E-05 -0.72114 -0.00035317 -0.54566 -0.00026723 489.7369516759057 19.066 0.45366 17.669 17.501 17.955 -1.3966 19 12 2 0 0 0 0.22356 1 3123 3123 57.249 17.01 1 2480000 30124 5827;10384 20136 20145 29676 29676 -0.029602373650277514 MESRSVAQA 9 Unmodified _MESRSVAQA_ 0 0 0 ENSG00000167637|ENST00000618787|ZNF283;ENST00000481374.1_1_1:76216171-76216535:+|nuORF;AluSg7_dup3470|chr7:92112548-92112847:+|1.1476481431393448|0.0120808203020236|6.57|479.0|16|2|anti-sense;ENST00000545748.5_1_12:52431545-52431905:+|nuORF;ENST00000548942.1_1_12:50527593-50529244:-|nuORF;ENST00000435930.1_1_9:139731025-139731532:+|nuORF;ENST00000380189.8_1_12:50527593-50531570:-|nuORF;nc|ENSG00000261832|Q13286-5|CLN3;ZNF283|p.W330Gfs*10|3|0.41|ENSG00000167637|chr19:43847583-43847583|T/-|frameshift_variant;ENST00000481865.5_1_3:195611475-195611958:-|nuORF ENSG00000167637|ENST00000618787|ZNF283;ENST00000481865.5_1_3:195611475-195611958:-|nuORF ENST00000481865.5_1_3:195611475-195611958:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2550354003906 2 489.737291 977.460029 -0.232 -0.00011362 -0.19666 -9.6311E-05 -0.42865 -0.00020993 489.73716024569444 19.002 0.32068 17.677 17.506 17.827 -1.3251 14 8 2 0 0 0 0.6202 1 2868 2868 33.445 3.6043 1 1714800 30125 5827;10384 20136 20145 29677 29677 -0.029602373650277514 MESRSVAQA 9 Unmodified _MESRSVAQA_ 0 0 0 ENSG00000167637|ENST00000618787|ZNF283;ENST00000481374.1_1_1:76216171-76216535:+|nuORF;AluSg7_dup3470|chr7:92112548-92112847:+|1.1476481431393448|0.0120808203020236|6.57|479.0|16|2|anti-sense;ENST00000545748.5_1_12:52431545-52431905:+|nuORF;ENST00000548942.1_1_12:50527593-50529244:-|nuORF;ENST00000435930.1_1_9:139731025-139731532:+|nuORF;ENST00000380189.8_1_12:50527593-50531570:-|nuORF;nc|ENSG00000261832|Q13286-5|CLN3;ZNF283|p.W330Gfs*10|3|0.41|ENSG00000167637|chr19:43847583-43847583|T/-|frameshift_variant;ENST00000481865.5_1_3:195611475-195611958:-|nuORF ENSG00000167637|ENST00000618787|ZNF283;ENST00000481865.5_1_3:195611475-195611958:-|nuORF ENST00000481865.5_1_3:195611475-195611958:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.254638671875 2 489.737291 977.460029 -1.2941 -0.00063379 1.2631 0.00061857 -0.031077 -1.522E-05 489.7378276242032 19.216 0.48303 17.581 17.395 17.878 -1.6351 18 13 2 0 0 0 0.48307 1 2888 2888 33.445 3.6043 1 1023100 30126 5827;10384 20136 20145 29678 29678 -0.029602373650277514 MESTLDLGSL 10 Unmodified _MESTLDLGSL_ 0 0 0 REV__ENST00000261537.6_1_18:19445454-19445538:+|nuORF REV__ENST00000261537.6_1_18:19445454-19445538:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.26904296875 2 533.260265 1064.50598 NaN NaN NaN NaN NaN NaN NaN 110 1 105.62 105.12 106.12 -4.3776 0 0 0 0.22323 1 21678 21678 24.021 2.2739 1 + 30127 20186 20137 20146 29679 29679 -0.023696369734580003 MESVCRTP 8 Unmodified _MESVCRTP_ 0 0 0 REV__ENST00000536066.1_1_12:2967806-2973707:-|nuORF REV__ENST00000536066.1_1_12:2967806-2973707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5409240722656 2 461.709688 921.404823 NaN NaN NaN NaN NaN NaN NaN 26.319 1 24.685 24.185 25.185 -1.6347 0 0 0 0.21292 1 4361 4361 14.838 0.25658 1 + 30128 15233 20138 20147 29680 29680 -0.05902367157148092 MESVVVSEY 9 Unmodified _MESVVVSEY_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2713012695312 2 521.741708 1041.46886 -0.20384 -0.00010635 0.55585 0.00029001 0.35201 0.00018366 521.7418761374038 99.545 0.52267 95.412 95.163 95.685 -4.1326 27 14 2 0 0 0 0.034088 2 19568 19568;19572 42.095 16.742 1 2285300 30129 5050 20139 20148 29681;29682 29681 -0.05021308519212653 MESVVVSEY 9 Unmodified _MESVVVSEY_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2764892578125 2 521.741708 1041.46886 -0.47671 -0.00024872 0.61584 0.00032131 0.13913 7.2589E-05 521.742003106195 99.763 0.53993 95.466 95.242 95.782 -4.297 25 15 2 0 0 0 0.049167 2 19060 19060;19064 39.957 10.871 1 2665300 30130 5050 20139 20148 29683;29684 29683 -0.05021308519212653 MESVVVSEY 9 Unmodified _MESVVVSEY_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2765502929688 2 521.741708 1041.46886 0.26678 0.00013919 -0.098647 -5.1468E-05 0.16814 8.7724E-05 521.7415155802811 99.351 0.51821 95.394 95.206 95.725 -3.9564 26 14 2 0 0 0 0.061198 1 19095 19095 22.621 10.871 1 2394600 30131 5050 20139 20148 29685 29685 -0.05021308519212653 METAAAVAA 9 Oxidation (M) _M(Oxidation (M))ETAAAVAA_ M(1)ETAAAVAA M(78)ETAAAVAA 0 0 1 ENST00000290277.10_1_X:47420617-47420644:+|nuORF ENST00000290277.10_1_X:47420617-47420644:+|nuORF ENST00000290277.10_1_X:47420617-47420644:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2530822753906 2 425.702386 849.390218 0.15207 6.4737E-05 0.074608 3.1761E-05 0.22668 9.6498E-05 425.70238172925235 28.07 0.92805 28.07 27.597 28.525 0 64 26 3 0 0 0 0.064469 1 4954 4954 77.984 45.867 1 12677000 30132 8470 20140 20149 29686 29686 108 -0.04050116033647555 METAAAVAA 9 Oxidation (M) _M(Oxidation (M))ETAAAVAA_ M(1)ETAAAVAA M(78)ETAAAVAA 0 0 1 ENST00000290277.10_1_X:47420617-47420644:+|nuORF ENST00000290277.10_1_X:47420617-47420644:+|nuORF ENST00000290277.10_1_X:47420617-47420644:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2421875 2 425.702386 849.390218 0.42331 0.0001802 -0.18007 -7.6656E-05 0.24324 0.00010355 425.70226338555403 29.727 0.93977 27.61 27.214 28.154 -2.1167 67 26 3 0 0 0 0.064469 1 5326 5326 77.984 54.836 1 6261700 30133 8470 20140 20149 29687 29687 108 -0.04050116033647555 METAAAVAA 9 Oxidation (M) _M(Oxidation (M))ETAAAVAA_ 0 0 1 ENST00000290277.10_1_X:47420617-47420644:+|nuORF ENST00000290277.10_1_X:47420617-47420644:+|nuORF ENST00000290277.10_1_X:47420617-47420644:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 425.702386 849.390218 0.31668 0.00013481 0.00070149 2.9863E-07 0.31738 0.00013511 425.70233395183516 29.694 1.0467 27.802 27.439 28.485 -1.8928 0.080877 4.5456E-05 NaN 77.984 62 29 3 NaN NaN NaN NaN 0 NaN NaN 0 5523800 30134 8470 20140 20149 108 -0.04050116033647555 METCCPCCCC 10 Unmodified _METCCPCCCC_ 0 0 0 ENST00000599649.5_1_19:52149845-52150035:-|nuORF ENST00000599649.5_1_19:52149845-52150035:-|nuORF ENST00000599649.5_1_19:52149845-52150035:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7767944335938 2 548.131872 1094.24919 NaN NaN NaN NaN NaN NaN NaN 69.523 1 65.987 65.487 66.487 -3.5362 0 0 0 0.22588 1 13089 13089 0.45834 0.057624 1 30135 11695 20141 20150 29688 29688 -0.29416304652750114 METCCPCCCC 10 Unmodified _METCCPCCCC_ 0 0 0 ENST00000599649.5_1_19:52149845-52150035:-|nuORF ENST00000599649.5_1_19:52149845-52150035:-|nuORF ENST00000599649.5_1_19:52149845-52150035:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 548.4842529296875 2 548.131872 1094.24919 NaN NaN NaN NaN NaN NaN NaN 167.43 1 162.49 161.99 162.99 -4.948 0 0 0 0.22588 1 32935 32935 0 0 1 30136 11695 20141 20150 29689 29689 -0.29416304652750114 METCCPCCCC 10 Unmodified _METCCPCCCC_ 0 0 0 ENST00000599649.5_1_19:52149845-52150035:-|nuORF ENST00000599649.5_1_19:52149845-52150035:-|nuORF ENST00000599649.5_1_19:52149845-52150035:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 548.3569946289062 2 548.131872 1094.24919 NaN NaN NaN NaN NaN NaN NaN 167.48 1 162.53 162.03 163.03 -4.948 0 0 0 0.22588 1 32948 32948 0 0 1 30137 11695 20141 20150 29690 29690 -0.29416304652750114 METHIMHTF 9 2 Oxidation (M) _M(Oxidation (M))ETHIM(Oxidation (M))HTF_ M(1)ETHIM(1)HTF M(69)ETHIM(69)HTF 0 0 2 ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK ENST00000483155.5_1_9:79002317-79008728:-|nuORF ENST00000483155.5_1_9:79002317-79008728:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2515258789062 2 589.752084 1177.48961 0.3425 0.00020199 -0.031934 -1.8833E-05 0.31056 0.00018316 589.752097210865 34.131 0.58397 34.131 33.829 34.413 0 28 16 2 0 0 0 0.053942 1 6203 6203 69.105 50.959 1 843440 30138 3891 20142 20151 29691 29691 63;64 -0.09203041411183221 METIYFEY 8 Unmodified _METIYFEY_ 0 0 0 REV__tr|U7T775|U7T775_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00141PE=4SV=1 REV__tr|U7T775|U7T775_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00141PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7911376953125 2 548.238801 1094.46305 0.092624 5.078E-05 0.71747 0.00039335 0.8101 0.00044413 548.2389528505964 58.157 0.44374 55.247 54.861 55.304 -2.9105 21 12 2 0 0 0 0.97173 1 11119 11119 12.532 4.6214 1 809040 + 30139 25463 20143 20152 29692 29692 -0.0804040703087594 METKIKNY 8 Oxidation (M) _M(Oxidation (M))ETKIKNY_ M(1)ETKIKNY M(120)ETKIKNY 0 0 1 ENSG00000126267|ENST00000649813|COX6B1 ENSG00000126267|ENST00000649813|COX6B1 ENSG00000126267|ENST00000649813|COX6B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2671508789062 2 521.765517 1041.51648 0.14283 7.4524E-05 0.10593 5.5273E-05 0.24877 0.0001298 521.7654833182224 17.749 1.6206 17.749 16.681 18.302 0 56 45 2 0 0 0 0.05075 2 2827 2827;2846 118.07 53.832 1 3633500 30140 3424 20144 20153 29693;29694 29693 59 -0.00261609528365625 METKIKNY 8 Oxidation (M) _M(Oxidation (M))ETKIKNY_ M(1)ETKIKNY M(66)ETKIKNY 0 0 1 ENSG00000126267|ENST00000649813|COX6B1 ENSG00000126267|ENST00000649813|COX6B1 ENSG00000126267|ENST00000649813|COX6B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.28076171875 2 521.765517 1041.51648 -0.16533 -8.6263E-05 0.24612 0.00012842 0.080789 4.2153E-05 521.7657018251709 19.091 1.0117 17.695 17.196 18.208 -1.3966 46 28 3 0 0 0 0.082857 1 3145 3145 66.457 35.82 1 2026000 30141 3424 20144 20153 29695 29695 59 -0.00261609528365625 METKSPTSPS 10 Unmodified _METKSPTSPS_ 0 0 0 nc|ENSG00000197251|Q6ZUF6|LINC00336 nc|ENSG00000197251|Q6ZUF6|LINC00336 nc|ENSG00000197251|Q6ZUF6|LINC00336 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2697143554688 2 532.750064 1063.48558 -0.040955 -2.1819E-05 -1.6175 -0.00086172 -1.6584 -0.00088353 532.7491344528273 47.156 0.61968 44.206 43.948 44.568 -2.9499 25 17 2 0 0 0 0.64074 1 8553 8553 21.537 4.4241 1 2097800 30142 12540 20145 20154 29696 29696 -0.0436280763326522 METMQCMS 8 Unmodified _METMQCMS_ 0 0 0 SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant;ENSG00000007908|ENST00000333360|SELE SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24151611328125 2 480.668317 959.32208 0.18943 9.1054E-05 1.1583 0.00055675 1.3477 0.00064781 480.6682661541657 41.896 0.39008 41.896 41.76 42.15 0 18 10 2 0 0 0 0.97966 1 7856 7856 16.942 0 1 657440 30143 1029 20146 20155 29697 29697 -0.15920768271814723 METPSIAAH 9 Unmodified _METPSIAAH_ 0 0 0 ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7298278808594 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 51.935 1 51.935 51.435 52.435 0 0 0 0 0.12288 1 9866 9866 34.102 17.16 1 30144 7392 20147 20156 29698 29698 -0.036187382509979216 METPSIAAH 9 Unmodified _METPSIAAH_ 0 0 0 ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7308044433594 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 54.165 1 51.282 50.782 51.782 -2.8837 0 0 0 0.1761 1 10330 10330 26.884 11.036 1 30145 7392 20147 20156 29699 29699 -0.036187382509979216 METPSIAAH 9 Unmodified _METPSIAAH_ 0 0 0 ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72979736328125 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 54.44 1 51.557 51.057 52.057 -2.8837 0 0 0 0.18489 1 10391 10391 17.113 16.99 1 30146 7392 20147 20156 29700 29700 -0.036187382509979216 METPSIAAH 9 Unmodified _METPSIAAH_ 0 0 0 ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72979736328125 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 54.459 1 51.575 51.075 52.075 -2.8837 0 0 0 0.020396 1 10395 10395 67.344 33.241 1 30147 7392 20147 20156 29701 29701 -0.036187382509979216 METPSIAAH 9 Unmodified _METPSIAAH_ 0 0 0 ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7311096191406 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 54.798 1 51.915 51.415 52.415 -2.8837 0 0 0 0.079869 1 10468 10468 42.095 15.211 1 30148 7392 20147 20156 29702 29702 -0.036187382509979216 METPSIAAH 9 Unmodified _METPSIAAH_ 0 0 0 ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7301940917969 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 55.018 1 52.134 51.634 52.634 -2.8837 0 0 0 0.20628 1 10516 10516 21.747 5.8995 1 30149 7392 20147 20156 29703 29703 -0.036187382509979216 METPSIAAH 9 Unmodified _METPSIAAH_ 0 0 0 ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74407958984375 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 54.943 1 51.807 51.307 52.307 -3.1352 0 0 0 0.052972 1 10145 10145 50.855 16.753 1 30150 7392 20147 20156 29704 29704 -0.036187382509979216 METPSIAAH 9 Unmodified _METPSIAAH_ 0 0 0 ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.730224609375 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 55.048 1 51.911 51.411 52.411 -3.1377 0 0 0 0.052972 1 10207 10207 50.855 16.753 1 30151 7392 20147 20156 29705 29705 -0.036187382509979216 METTSLLL 8 Unmodified _METTSLLL_ 0 0 0 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7694091796875 2 454.243886 906.47322 -0.048954 -2.2237E-05 1.3623 0.00061879 1.3133 0.00059656 454.24447975323704 68.893 0.96076 68.893 68.324 69.285 0 37 26 2 0 0 0 0.89552 1 13347 13347 26.341 0 1 4263300 30152 7122 20148 20157 29706 29706 0.016242006943684828 MEVASVAAY 9 Oxidation (M) _M(Oxidation (M))EVASVAAY_ M(1)EVASVAAY M(48)EVASVAAY 0 0 1 ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7238464355469 2 478.723318 955.432083 -0.39304 -0.00018816 0.86374 0.00041349 0.4707 0.00022534 478.72367002691004 65.777 0.48198 65.777 65.552 66.033 0 22 13 2 0 0 0 0.12183 2 12665 12665;12705 48.346 25.197 1 2893500 30153 9061 20149 20158 29707;29708 29707 110 -0.04741560345121343 MEVASVAAY 9 Oxidation (M) _M(Oxidation (M))EVASVAAY_ M(1)EVASVAAY M(48)EVASVAAY 0 0 1 ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7373962402344 2 478.723318 955.432083 -0.39526 -0.00018922 0.65505 0.00031359 0.25979 0.00012437 478.72350970602776 66.179 0.51968 66.179 65.999 66.518 0 22 14 2 0 0 0 0.12183 2 12768 12768;12804 48.346 19.859 1 1920900 30154 9061 20149 20158 29709;29710 29709 110 -0.04741560345121343 MEVASVAAY 9 Oxidation (M) _M(Oxidation (M))EVASVAAY_ M(1)EVASVAAY M(48)EVASVAAY 0 0 1 ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72369384765625 2 478.723318 955.432083 -0.080931 -3.8744E-05 0.48216 0.00023082 0.40123 0.00019208 478.723544709001 69.645 0.53259 66.465 66.223 66.755 -3.1796 23 14 2 0 0 0 0.12183 2 13529 13529;13579 48.346 21.462 1 1809500 30155 9061 20149 20158 29711;29712 29711 110 -0.04741560345121343 MEVASVAAY 9 Oxidation (M) _M(Oxidation (M))EVASVAAY_ M(1)EVASVAAY M(57)EVASVAAY 0 0 1 ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7413330078125 2 478.723318 955.432083 0.3775 0.00018072 0.073815 3.5337E-05 0.45131 0.00021605 478.7231292403148 70.005 0.52065 66.426 66.21 66.73 -3.5798 25 14 2 0 0 0 0.095051 2 13196 13188;13196 57.471 25.166 1 1054200 30156 9061 20149 20158 29713;29714 29714 110 -0.04741560345121343 MEVASVAAY 9 Oxidation (M) _M(Oxidation (M))EVASVAAY_ M(1)EVASVAAY M(48)EVASVAAY 0 0 1 ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.723388671875 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 69.623 1 66.058 65.558 66.558 -3.5647 0 0 0 0.05839 1 13109 13109 48.346 22.947 1 30157 9061 20149 20158 29715 29715 110 -0.04741560345121343 MEVASVAAY 9 Oxidation (M) _M(Oxidation (M))EVASVAAY_ M(1)EVASVAAY M(48)EVASVAAY 0 0 1 ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7234802246094 2 478.723318 955.432083 0.33456 0.00016016 0.0063796 3.0541E-06 0.34094 0.00016322 478.7232019615078 69.41 0.55738 66.02 65.736 66.294 -3.3903 25 15 2 0 0 0 0.12183 1 13141 13141 48.346 14.243 1 2024500 30158 9061 20149 20158 29716 29716 110 -0.04741560345121343 MEVASVAAY 9 Oxidation (M) _M(Oxidation (M))EVASVAAY_ M(1)EVASVAAY M(48)EVASVAAY 0 0 1 ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF ENST00000367188.4_1_1:204380617-204380770:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7236328125 2 478.723318 955.432083 0.34017 0.00016285 0.07576 3.6268E-05 0.41593 0.00019911 478.7232427421882 69.963 0.59689 66.496 66.217 66.814 -3.467 28 16 2 0 0 0 0.12183 2 13223 13223;13268 48.346 22.947 1 1505500 30159 9061 20149 20158 29717;29718 29717 110 -0.04741560345121343 MEVDSEQMLY 10 Unmodified _MEVDSEQMLY_ 0 0 0 REV__ENSG00000204532|ENST00000534327|ZSCAN5C REV__ENSG00000204532|ENST00000534327|ZSCAN5C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7805786132812 2 622.762314 1243.51008 NaN NaN NaN NaN NaN NaN NaN 106.03 1 106.03 105.53 106.53 0 0 0 0 0.22588 1 20840 20840 9.3831 0 1 + 30160 19542 20150 20159 29719 29719 -0.10193915542026843 MEVDSEQMLY 10 Unmodified _MEVDSEQMLY_ 0 0 0 REV__ENSG00000204532|ENST00000534327|ZSCAN5C REV__ENSG00000204532|ENST00000534327|ZSCAN5C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.763427734375 2 622.762314 1243.51008 NaN NaN NaN NaN NaN NaN NaN 106.11 1 106.11 105.61 106.61 0 0 0 0 0.22588 1 20856 20856 9.3831 0 1 + 30161 19542 20150 20159 29720 29720 -0.10193915542026843 MEVELPAAA 9 Unmodified _MEVELPAAA_ 0 0 0 KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant;ENST00000493027.5_1_1:45205556-45221765:+|nuORF;nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2460632324219 2 465.733686 929.452819 0.10819 5.0386E-05 -0.22351 -0.00010409 -0.11532 -5.3709E-05 465.73354885103174 115.71 0.63518 115.71 115.34 115.98 0 31 17 2 0 0 0 0.28156 1 22797 22797 39.957 20.518 1 4099300 30162 4447 20151 20160 29721 29721 -0.014729699654708384 MEVELPAAA 9 Unmodified _MEVELPAAA_ 0 0 0 KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant;ENST00000493027.5_1_1:45205556-45221765:+|nuORF;nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24542236328125 2 465.733686 929.452819 0.57724 0.00026884 -0.62518 -0.00029117 -0.047933 -2.2324E-05 465.73333259703986 120.34 0.80273 115.7 115.31 116.11 -4.645 49 22 3 0 0 0 0.28156 1 23072 23072 39.957 24.11 1 5570500 30163 4447 20151 20160 29722 29722 -0.014729699654708384 MEVELPAAA 9 Unmodified _MEVELPAAA_ 0 0 0 KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant;ENST00000493027.5_1_1:45205556-45221765:+|nuORF;nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 465.733686 929.452819 0.21442 9.9863E-05 -0.29713 -0.00013838 -0.082709 -3.852E-05 465.73352214423915 120.21 0.87434 115.69 115.22 116.09 -4.5221 -0.017339 7.9521E-05 NaN 39.957 42 24 2 NaN NaN NaN NaN 0 NaN NaN 0 5523200 30164 4447 20151 20160 -0.014729699654708384 MEVELPAAA 9 Unmodified _MEVELPAAA_ 0 0 0 KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant;ENST00000493027.5_1_1:45205556-45221765:+|nuORF;nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 465.733686 929.452819 0.37494 0.00017462 -0.36321 -0.00016916 0.011723 5.4599E-06 465.73347954362015 120.19 0.79339 115.72 115.3 116.09 -4.467 0.019977 1.7967E-05 NaN 39.957 39 22 2 NaN NaN NaN NaN 0 NaN NaN 0 3925400 30165 4447 20151 20160 -0.014729699654708384 MEVGTLLPNA 10 Unmodified _MEVGTLLPNA_ 0 0 0 REV__nc|ENSG00000162267|Q06033-2|ITIH3 REV__nc|ENSG00000162267|Q06033-2|ITIH3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2692260742188 2 522.773342 1043.53213 -0.0489 -2.5564E-05 0.42147 0.00022033 0.37257 0.00019477 523.2753142103811 120.13 0.56126 115.48 115.2 115.76 -4.645 18 15 2 0 0 0 0.86856 1 23100 23100 11.495 5.2889 1 1060900 + + 30166 17485 20152 20161 29723 29723 0.012106769886713664 MEVIEKPEND 10 Unmodified _MEVIEKPEND_ 0 0 0 ENSG00000071051|ENST00000233154|NCK2 ENSG00000071051|ENST00000233154|NCK2 ENSG00000071051|ENST00000233154|NCK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2823486328125 2 602.281728 1202.5489 NaN NaN NaN NaN NaN NaN NaN 24.578 1 23.044 22.544 23.544 -1.5342 0 0 0 2.8426 1 4008 4008 0.26539 0.093389 1 30167 1444 20153 20162 29724 29724 -0.0442686691601466 MEVKPSSVTA 10 Oxidation (M) _M(Oxidation (M))EVKPSSVTA_ M(1)EVKPSSVTA M(59)EVKPSSVTA 0 0 1 nc|ENSG00000154640|Q14201-2|BTG3;ENSG00000154640|ENST00000348354|BTG3 nc|ENSG00000154640|Q14201-2|BTG3 nc|ENSG00000154640|Q14201-2|BTG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28271484375 2 532.768257 1063.52196 0.6905 0.00036788 -0.52826 -0.00028144 0.16224 8.6438E-05 532.7678999780645 28.822 0.52482 27.067 26.736 27.26 -1.7552 28 14 3 0 0 0 0.10181 2 4871 4871;4898 59.368 26.583 1 1448300 30168 5019 20154 20163 29725;29726 29725 80 -0.007259307365302448 MEVKPSSVTA 10 Oxidation (M) _M(Oxidation (M))EVKPSSVTA_ M(1)EVKPSSVTA M(55)EVKPSSVTA 0 0 1 nc|ENSG00000154640|Q14201-2|BTG3;ENSG00000154640|ENST00000348354|BTG3 nc|ENSG00000154640|Q14201-2|BTG3 nc|ENSG00000154640|Q14201-2|BTG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2694702148438 2 532.768257 1063.52196 0.45189 0.00024075 -0.53696 -0.00028608 -0.085076 -4.5326E-05 532.7679989670634 28.931 0.45152 26.935 26.763 27.215 -1.9962 24 12 3 0 0 0 0.11758 1 4895 4895 55.235 28.967 1 1265000 30169 5019 20154 20163 29727 29727 80 -0.007259307365302448 MEVKVMEL 8 Unmodified _MEVKVMEL_ 0 0 0 ENST00000260605.12_1_2:44001254-44010677:+|nuORF;ENST00000496980.6_1_2:44001254-44008803:+|nuORF ENST00000260605.12_1_2:44001254-44010677:+|nuORF ENST00000260605.12_1_2:44001254-44010677:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27056884765625 2 489.753564 977.492575 0.12754 6.2462E-05 0.29792 0.00014591 0.42546 0.00020837 489.7536280139554 129.84 0.67953 125.2 124.97 125.65 -4.6359 27 18 2 0 0 0 0.12741 3 25571 25571;25576;25620 57.722 13.95 1 1627100 30170 8283 20155 20164 29728;29729;29730 29728 0.0029283371362680555 MEVKVMEL 8 Unmodified _MEVKVMEL_ 0 0 0 ENST00000260605.12_1_2:44001254-44010677:+|nuORF;ENST00000496980.6_1_2:44001254-44008803:+|nuORF ENST00000260605.12_1_2:44001254-44010677:+|nuORF ENST00000260605.12_1_2:44001254-44010677:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2560729980469 2 489.753564 977.492575 0.14457 7.0802E-05 -0.036728 -1.7988E-05 0.10784 5.2815E-05 489.75349504383837 130.13 0.63484 125.3 124.9 125.54 -4.8355 26 17 2 0 0 0 0.21798 1 24965 24965 43.772 3.8227 1 1782000 30171 8283 20155 20164 29731 29731 0.0029283371362680555 MEVLSRTML 9 Oxidation (M) _MEVLSRTM(Oxidation (M))L_ MEVLSRTM(1)L M(-41)EVLSRTM(41)L 0 0 1 REV__ENST00000511433.1_1_5:31908585-31908654:+|nuORF REV__ENST00000511433.1_1_5:31908585-31908654:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.786865234375 2 548.280477 1094.5464 0.61326 0.00033624 -0.095763 -5.2505E-05 0.5175 0.00028373 548.280201686665 76.99 1.049 76.99 76.585 77.634 0 64 29 3 0 0 0 0.27865 1 14977 14977 41.84 17.819 2 6748200 + 30172 22550 20156 20165 29732 29732 127 0.0029100614531216706 MEVLSRTML 9 Oxidation (M) _MEVLSRTM(Oxidation (M))L_ MEVLSRTM(1)L M(-62)EVLSRTM(62)L 0 0 1 REV__ENST00000511433.1_1_5:31908585-31908654:+|nuORF REV__ENST00000511433.1_1_5:31908585-31908654:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7723999023438 2 548.280477 1094.5464 0.019317 1.0591E-05 0.016164 8.8624E-06 0.035481 1.9453E-05 548.2804239426167 80.804 0.80692 76.965 76.597 77.404 -3.8392 57 22 4 0 0 0 0.061087 1 15342 15342 62.573 10.304 2 6388400 + 30173 22550 20156 20165 29733 29733 127 0.0029100614531216706 MEVPSFDATV 10 Unmodified _MEVPSFDATV_ 0 0 0 MUC16|p.F4645V|1|0.26|ENSG00000181143|chr19:8962837-8962837|A/C|missense_variant MUC16|p.F4645V|1|0.26|ENSG00000181143|chr19:8962837-8962837|A/C|missense_variant MUC16|p.F4645V|1|0.26|ENSG00000181143|chr19:8962837-8962837|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7916870117188 2 548.254982 1094.49541 0.18316 0.00010042 -0.93043 -0.00051011 -0.74727 -0.0004097 548.2540235204665 95.466 0.69391 95.466 95.142 95.836 0 30 19 2 0 0 0 0.84281 1 18705 18705 9.3831 0 1 1521700 30174 12174 20157 20166 29734 29734 -0.04805619627904889 MEVRVSQL 8 Unmodified _MEVRVSQL_ 0 0 0 nc|ENSG00000067955|Q13951|CBFB nc|ENSG00000067955|Q13951|CBFB nc|ENSG00000067955|Q13951|CBFB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2364501953125 2 481.260402 960.506251 -0.023976 -1.1539E-05 0.68072 0.00032761 0.65675 0.00031607 481.2607136196466 85.878 0.46277 85.878 85.647 86.11 0 20 12 2 0 0 0 0.38197 1 16728 16728 41.956 1.7163 1 2434600 30175 12230 20158 20167 29735 29735 0.024418275370749143 MEVRVSQL 8 Unmodified _MEVRVSQL_ 0 0 0 nc|ENSG00000067955|Q13951|CBFB nc|ENSG00000067955|Q13951|CBFB nc|ENSG00000067955|Q13951|CBFB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2362365722656 2 481.260402 960.506251 -0.045461 -2.1879E-05 0.34578 0.00016641 0.30032 0.00014453 481.2605511015471 89.451 0.5921 85.591 85.237 85.829 -3.8595 24 16 2 0 0 0 0.17068 1 17498 17498 82.529 0 1 2003000 30176 12230 20158 20167 29736 29736 0.024418275370749143 MEVRVSQL 8 Unmodified _MEVRVSQL_ 0 0 0 nc|ENSG00000067955|Q13951|CBFB nc|ENSG00000067955|Q13951|CBFB nc|ENSG00000067955|Q13951|CBFB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.771240234375 2 481.260402 960.506251 0.41237 0.00019846 -0.1159 -5.578E-05 0.29647 0.00014268 481.2604832488735 89.651 0.57211 85.607 85.31 85.883 -4.0443 27 15 2 0 0 0 0.082857 1 17093 17093 66.457 8.7347 1 1878600 30177 12230 20158 20167 29737 29737 0.024418275370749143 MEVVGVSPGS 10 Unmodified _MEVVGVSPGS_ 0 0 0 REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2460632324219 2 481.236593 960.458632 0.0087606 4.2159E-06 -0.35881 -0.00017267 -0.35004 -0.00016845 481.23658691093493 85.547 0.95307 85.547 84.942 85.895 0 41 26 3 0 0 0 0.61964 1 16737 16737 18.146 4.2403 1 1673900 + 30178 21524 20159 20168 29738 29738 -0.023178714537607448 MEVVGVSPGS 10 Unmodified _MEVVGVSPGS_ 0 0 0 REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2362365722656 2 481.236593 960.458632 -0.043043 -2.0714E-05 0.65184 0.00031369 0.6088 0.00029297 481.23685229500575 89.575 0.56517 85.716 85.373 85.938 -3.8595 26 15 2 0 0 0 0.53552 1 17498 17498 22.736 3.4793 1 1213500 + 30179 21524 20159 20168 29739 29739 -0.023178714537607448 MEVVGVSPGS 10 Unmodified _MEVVGVSPGS_ 0 0 0 REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2366638183594 2 481.236593 960.458632 0.41311 0.00019881 -0.65599 -0.00031569 -0.24287 -0.00011688 481.23655509008177 89.716 1.1645 85.671 84.964 86.128 -4.0443 59 32 3 0 0 0 0.51199 1 17092 17092 24.021 2.2739 1 971570 + 30180 21524 20159 20168 29740 29740 -0.023178714537607448 MEVVLIFV 8 Unmodified _MEVVLIFV_ 0 0 0 nc|ENSG00000182707|P58550|FXYD6P3 nc|ENSG00000182707|P58550|FXYD6P3 nc|ENSG00000182707|P58550|FXYD6P3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1856994628906 3 317.185752 948.535426 NaN NaN NaN NaN NaN NaN NaN 90.693 1 90.693 90.193 91.193 0 0 0 0 0.21486 1 17721 17721 0.45834 0 1 30181 12502 20160 20169 29741 29741 0.05909971833352756 MEVVVITH 8 Unmodified _MEVVVITH_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2547607421875 2 464.252046 926.489538 -0.12378 -5.7463E-05 -0.74075 -0.0003439 -0.86453 -0.00040136 464.2516678850489 86.454 0.78338 82.727 82.296 83.079 -3.727 50 21 3 0 0 0 0.17924 3 16906 16858;16906;16925 57.471 42.89 1 10979000 30182 26528;7260;26529 20161 20170 29742;29743;29744 29743 0.02335326651120795 MEVVVITH 8 Unmodified _MEVVVITH_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2536926269531 2 464.252046 926.489538 0.2399 0.00011137 -1.1094 -0.00051503 -0.86948 -0.00040366 464.2514775685055 86.759 0.80312 82.809 82.401 83.204 -3.9503 54 22 3 0 0 0 8448 1 16542 16542 64.86 64.179 1 11104000 30183 26528;7260;26529 20161 20170 29745 29745 0.02335326651120795 MEVVVITH 8 Unmodified _MEVVVITH_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.23748779296875 2 464.252046 926.489538 0.094189 4.3727E-05 -0.93722 -0.00043511 -0.84303 -0.00039138 464.2515227789119 86.537 0.74512 82.808 82.448 83.193 -3.7289 51 20 3 0 0 0 0.1027 4 16556 16499;16544;16548;16556 74.423 45.936 1 7795200 30184 26528;7260;26529 20161 20170 29746;29747;29748;29749 29749 0.02335326651120795 MEVVVITH 8 Unmodified _MEVVVITH_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.252046 926.489538 0.34756 0.00016135 -1.776 -0.00082453 -1.4285 -0.00066317 464.25121241945675 82.969 0.793 82.969 82.568 83.361 0 0.14075 -0.00066869 NaN 74.423 37 22 2 NaN NaN NaN NaN 0 NaN NaN 0 6498100 30185 26528;7260;26529 20161 20170 0.02335326651120795 MEWQQKAQM 9 Unmodified _MEWQQKAQM_ 0 0 0 ENST00000511640.1_1_5:25910858-25911257:+|nuORF ENST00000511640.1_1_5:25910858-25911257:+|nuORF ENST00000511640.1_1_5:25910858-25911257:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.26123046875 2 590.267901 1178.52125 NaN NaN NaN NaN NaN NaN NaN 103.64 1 99.294 98.794 99.794 -4.346 0 0 0 0.23508 1 19851 19851 11.64 5.4345 1 30186 10749 20162 20171 29750 29750 -0.06087048657263949 MEYETMDY 8 Unmodified _MEYETMDY_ 0 0 0 tr|U7T8R5|U7T8R5_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00140PE=3SV=1 tr|U7T8R5|U7T8R5_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00140PE=3SV=1 tr|U7T8R5|U7T8R5_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00140PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2831420898438 2 541.196276 1080.378 0.2559 0.00013849 0.47593 0.00025757 0.73182 0.00039606 541.6980623830531 161.55 0.53128 156.4 156.05 156.59 -5.1438 24 14 2 0 0 0 1.0249 1 31359 31359 5.7604 0 1 1783600 30187 26512 20163 20172 29751 29751 -0.15897520558996803 MEYIPEGEI 9 Unmodified _MEYIPEGEI_ 0 0 0 ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP;STRAP|p.S188R|1|0.06|ENSG00000023734|chr12:15895420-15895420|A/C|missense_variant ENSG00000023734|ENST00000419869|STRAP ENSG00000023734|ENST00000419869|STRAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2643432617188 2 540.749533 1079.48451 0.18142 9.81E-05 -0.60408 -0.00032665 -0.42266 -0.00022855 540.7490124595894 131.06 1.0607 126.43 125.93 127 -4.6359 50 29 2 0 0 0 0.55979 1 25913 25913 15.847 3.3156 1 2904500 30188 1134 20164 20173 29752 29752 -0.052050220021556015 MEYLQSVS 8 Unmodified _MEYLQSVS_ 0 0 0 PTPRR|p.A374V|1|0.29|ENSG00000153233|chr12:70701210-70701210|G/A|missense_variant PTPRR|p.A374V|1|0.29|ENSG00000153233|chr12:70701210-70701210|G/A|missense_variant PTPRR|p.A374V|1|0.29|ENSG00000153233|chr12:70701210-70701210|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7234802246094 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 41.056 1 38.517 38.017 39.017 -2.5398 0 0 0 0.2074 1 7366 7366 19.439 0 1 30189 12848 20165 20174 29753 29753 -0.04741560345109974 MEYPVCCI 8 Unmodified _MEYPVCCI_ 0 0 0 REV__ENST00000454830.6_1_15:74914261-74914384:+|nuORF REV__ENST00000454830.6_1_15:74914261-74914384:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73321533203125 2 479.197567 956.380582 -0.3834 -0.00018373 -1.252 -0.00059993 -1.6354 -0.00078366 479.1964124059982 68.485 0.57138 68.485 68.181 68.752 0 33 15 3 0 0 0 1.0095 1 13221 13221 0.69038 0 1 4978700 + 30190 21840 20166 20175 29754 29754 -0.09935343635038407 MFADGWQA 8 Unmodified _MFADGWQA_ 0 0 0 ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 309.1335144042969 3 309.133939 924.379988 NaN NaN NaN NaN NaN NaN NaN 147.06 1 142.06 141.56 142.56 -5 0 0 0 0.21486 1 28465 28465 0.45834 0 1 30191 8026 20167 20176 29755 29755 -0.08522678968222408 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.1974792480469 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 116.02 1 116.02 115.52 116.52 0 0 0 0 0.21486 1 22841 22841 0.45834 0 1 + 30192 22683 20168 20177 29756 29756 0.06804811273048017 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2334899902344 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 116.08 1 116.08 115.58 116.58 0 0 0 0 0.21486 1 22854 22854 0.45834 0 1 + 30193 22683 20168 20177 29757 29757 0.06804811273048017 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2045593261719 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 116.27 1 116.27 115.77 116.77 0 0 0 0 0.21486 1 22893 22893 0.45834 0 1 + 30194 22683 20168 20177 29758 29758 0.06804811273048017 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2414245605469 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 121.8 1 121.8 121.3 122.3 0 0 0 0 0.21486 1 24010 24010 0.45834 0 1 + 30195 22683 20168 20177 29759 29759 0.06804811273048017 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.196533203125 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 125.12 1 125.12 124.62 125.62 0 0 0 0 0.21486 1 24677 24677 0.45834 0 1 + 30196 22683 20168 20177 29760 29760 0.06804811273048017 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2326354980469 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 125.86 1 125.86 125.36 126.36 0 0 0 0 0.21486 1 24833 24833 0.45834 0 1 + 30197 22683 20168 20177 29761 29761 0.06804811273048017 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2330017089844 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 122.12 1 117.57 117.07 118.07 -4.5476 0 0 0 0.21486 1 24073 24073 0.45834 0 1 + 30198 22683 20168 20177 29762 29762 0.06804811273048017 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.225341796875 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 136.31 1 131.67 131.17 132.17 -4.6399 0 0 0 0.21486 1 26897 26897 0.45834 0 1 + 30199 22683 20168 20177 29763 29763 0.06804811273048017 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.23394775390625 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 126.09 1 121.32 120.82 121.82 -4.7681 0 0 0 0.21486 1 24203 24203 0.45834 0 1 + 30200 22683 20168 20177 29764 29764 0.06804811273048017 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.2257995605469 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 138.01 1 133.09 132.59 133.59 -4.9216 0 0 0 0.21486 1 26536 26536 0.45834 0 1 + 30201 22683 20168 20177 29765 29765 0.06804811273048017 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.1856384277344 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 138.03 1 133.11 132.61 133.61 -4.9216 0 0 0 0.21486 1 26541 26541 0.45834 0 1 + 30202 22683 20168 20177 29766 29766 0.06804811273048017 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2079772949219 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 130.42 1 125.64 125.14 126.14 -4.7725 0 0 0 0.21486 1 25099 25099 0.45834 0 1 + 30203 22683 20168 20177 29767 29767 0.06804811273048017 MFAKLPPK 8 Unmodified _MFAKLPPK_ 0 0 0 REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2194519042969 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 155.41 1 150.16 149.66 150.66 -5.2526 0 0 0 0.21486 1 30138 30138 0.45834 0 1 + 30204 22683 20168 20177 29768 29768 0.06804811273048017 MFCCCGSCC 9 Unmodified _MFCCCGSCC_ 0 0 0 ENST00000293230.9_1_17:74523460-74524138:-|nuORF ENST00000293230.9_1_17:74523460-74524138:-|nuORF ENST00000293230.9_1_17:74523460-74524138:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7257080078125 2 478.616715 955.218878 NaN NaN NaN NaN NaN NaN NaN 143.78 1 138.88 138.38 139.38 -4.8982 0 0 0 0.19635 1 27752 27752 0 0 1 30205 8481 20169 20178 29769 29769 -0.26052295255635727 MFEALEQLLER 11 Unmodified _MFEALEQLLER_ 0 0 0 REV__ENST00000470979.1_1_X:153186583-153187260:-|nuORF REV__ENST00000470979.1_1_X:153186583-153187260:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2389831542969 3 460.239355 1377.69624 NaN NaN NaN NaN NaN NaN NaN 74.849 1 71.172 70.672 71.672 -3.6764 0 0 0 0.22632 1 14151 14151 0.094841 0.09346 1 + 30206 14536 20170 20179 29770 29770 0.022496496887697504 MFEDENFIES 10 Unmodified _MFEDENFIES_ 0 0 0 IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant;ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000459929.5_1_1:185275751-185278625:-|nuORF IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7586669921875 2 630.758086 1259.50162 NaN NaN NaN NaN NaN NaN NaN 126.65 1 122.03 121.53 122.53 -4.6172 0 0 0 2.8426 1 24973 24973 0.84494 0.77168 1 30207 2940 20171 20180 29771 29771 -0.11775146187005703 MFGLPTLF 8 Unmodified _MFGLPTLF_ 0 0 0 REV__ENSG00000262628|ENST00000575751|OR1D5 REV__ENSG00000262628|ENST00000575751|OR1D5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 309.1668701171875 3 309.16658 924.477911 NaN NaN NaN NaN NaN NaN NaN 83.396 1 83.396 82.896 83.896 0 0 0 0 0.21486 1 16262 16262 0.45834 0 1 + 30208 19895 20172 20181 29772 29772 0.012651296277908841 MFHGIPAT 8 Unmodified _MFHGIPAT_ 0 0 0 ENST00000526977.5_1_8:145651442-145652328:-|nuORF;ENST00000527797.6_1_8:145651064-145652328:-|nuORF;ENSG00000160948|ENST00000292510|VPS28;nc|ENSG00000160948|Q9UK41-2|VPS28 ENST00000526977.5_1_8:145651442-145652328:-|nuORF ENST00000526977.5_1_8:145651442-145652328:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21661376953125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 175.54 1 170.65 170.15 171.15 -4.8917 0 0 0 0.21486 1 34987 34987 5.2307 2.6532 1 30209 5274 20173 20182 29773 29773 -0.019854982088986617 MFKKKLNT 8 Unmodified _MFKKKLNT_ 0 0 0 ENST00000504768.2_1_5:93246475-93410459:-|nuORF ENST00000504768.2_1_5:93246475-93410459:-|nuORF ENST00000504768.2_1_5:93246475-93410459:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.2037353515625 3 337.200284 1008.57902 NaN NaN NaN NaN NaN NaN NaN 91.631 1 91.631 91.131 92.131 0 0 0 0 0.21486 1 17912 17912 0.45834 0 1 30210 10661 20174 20183 29774 29774 0.07507581330503399 MFKLEVWE 8 Unmodified _MFKLEVWE_ 0 0 0 nc|ENSG00000129221|Q9NZN9-3|AIPL1;nc|ENSG00000129221|Q9NZN9-5|AIPL1;nc|ENSG00000129221|Q9NZN9-4|AIPL1;ENSG00000129221|ENST00000381129|AIPL1 nc|ENSG00000129221|Q9NZN9-3|AIPL1 nc|ENSG00000129221|Q9NZN9-3|AIPL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27294921875 2 541.272978 1080.5314 NaN NaN NaN NaN NaN NaN NaN 139.9 1 139.9 139.4 140.4 0 0 0 0 0.23366 1 27825 27825 0.30703 0 1 30211 3560 20175 20184 29775 29775 -0.005641176603376152 MFLNTTKQ 8 Unmodified _MFLNTTKQ_ 0 0 0 ENST00000296802.9_1_5:74072492-74072618:+|nuORF ENST00000296802.9_1_5:74072492-74072618:+|nuORF ENST00000296802.9_1_5:74072492-74072618:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 491.7562561035156 2 491.754953 981.495352 NaN NaN NaN NaN NaN NaN NaN 132.3 1 127.5 127 128 -4.799 0 0 0 0.10839 1 25471 25471 3.5871 1.8448 1 30212 8516 20176 20185 29776 29776 0.0038642516277604955 MFNDTLRL 8 Unmodified _MFNDTLRL_ 0 0 0 ENSG00000125498|ENST00000336077|KIR2DL1;nc|ENSG00000125498|P43626-2|KIR2DL1 ENSG00000125498|ENST00000336077|KIR2DL1 ENSG00000125498|ENST00000336077|KIR2DL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.20166015625 3 337.176027 1008.50625 NaN NaN NaN NaN NaN NaN NaN 82.324 1 78.767 78.267 79.267 -3.557 0 0 0 0.21486 1 16090 16090 0.45834 0 1 30213 3366 20177 20186 29777 29777 0.0023382753705618597 MFRSFREL 8 Unmodified _MFRSFREL_ 0 0 0 REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1 REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7821655273438 2 543.281669 1084.54878 0.20556 0.00011168 -1.6248 -0.00088273 -1.4192 -0.00077105 543.2808204934466 98.326 1.013 94.057 93.498 94.511 -4.2692 40 28 2 0 0 0 0.58432 1 18856 18856 23.148 5.0134 1 1635000 + 30214 17680 20178 20187 29778 29778 0.009892226652937097 MFSDVSIDFSP 11 Unmodified _MFSDVSIDFSP_ 0 0 0 ENSG00000181007|ENST00000392161|ZFP82 ENSG00000181007|ENST00000392161|ZFP82 ENSG00000181007|ENST00000392161|ZFP82 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7809448242188 2 622.778822 1243.54309 NaN NaN NaN NaN NaN NaN NaN 87.057 1 87.057 86.557 87.557 0 0 0 0 0.20718 1 16990 16990 17.113 0.96379 1 30215 6705 20179 20188 29779 29779 -0.06893965427684634 MFTSMDPP 8 Unmodified _MFTSMDPP_ 0 0 0 ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000478389.5_1_20:57565995-57566166:+|nuORF;ENST00000490205.1_1_20:57566094-57566594:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 309.12518310546875 3 309.131318 924.372125 NaN NaN NaN NaN NaN NaN NaN 103.76 1 103.76 103.26 104.26 0 0 0 0 0.21486 1 20391 20391 0.45834 0 1 30216 2040 20180 20189 29780 29780 -0.09308574279998538 MFTSMDPP 8 Unmodified _MFTSMDPP_ 0 0 0 ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000478389.5_1_20:57565995-57566166:+|nuORF;ENST00000490205.1_1_20:57566094-57566594:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 309.1321716308594 3 309.131318 924.372125 NaN NaN NaN NaN NaN NaN NaN 81.314 1 77.757 77.257 78.257 -3.557 0 0 0 0.21486 1 15879 15879 0.45834 0 1 30217 2040 20180 20189 29781 29781 -0.09308574279998538 MFTSMDPP 8 Unmodified _MFTSMDPP_ 0 0 0 ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000478389.5_1_20:57565995-57566166:+|nuORF;ENST00000490205.1_1_20:57566094-57566594:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 309.11572265625 3 309.131318 924.372125 NaN NaN NaN NaN NaN NaN NaN 92.763 1 88.838 88.338 89.338 -3.9251 0 0 0 0.21486 1 18170 18170 0.45834 0 1 30218 2040 20180 20189 29782 29782 -0.09308574279998538 MFTSMDPP 8 Unmodified _MFTSMDPP_ 0 0 0 ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000478389.5_1_20:57565995-57566166:+|nuORF;ENST00000490205.1_1_20:57566094-57566594:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 309.1312255859375 3 309.131318 924.372125 NaN NaN NaN NaN NaN NaN NaN 93.004 1 89.013 88.513 89.513 -3.9907 0 0 0 0.21486 1 18219 18219 0.45834 0 1 30219 2040 20180 20189 29783 29783 -0.09308574279998538 MFTVIYEEKYI 11 Unmodified _MFTVIYEEKYI_ 0 0 0 REV__tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1 REV__tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 479.2459411621094 3 479.244106 1434.71049 NaN NaN NaN NaN NaN NaN NaN 152.9 1 147.68 147.18 148.18 -5.2209 0 0 0 0.22632 1 29636 29636 0.03141 0 1 + 30220 24954 20181 20190 29784 29784 0.010523021170911306 MFVIRPFTL 9 Unmodified _MFVIRPFTL_ 0 0 0 REV__ENST00000474738.1_1_7:6624591-6628538:+|nuORF REV__ENST00000474738.1_1_7:6624591-6628538:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.208984375 3 375.215934 1122.62597 -0.036466 -1.3683E-05 -0.5985 -0.00022457 -0.63497 -0.00023825 375.21574064796795 41.253 0.37842 38.714 38.488 38.866 -2.5398 17 10 2 0 0 0 0.67174 1 7419 7419 8.1555 0.54658 1 945110 + 30221 16320 20182 20191 29785 29785 0.06956440881640447 MFYDTDVPY 9 Unmodified _MFYDTDVPY_ 0 0 0 nc|ENSG00000241399|Q8IX05-2|CD302 nc|ENSG00000241399|Q8IX05-2|CD302 nc|ENSG00000241399|Q8IX05-2|CD302 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3224487304688 2 575.741708 1149.46886 0.32702 0.00018828 -2.5186 -0.0014501 -2.1916 -0.0012618 575.7403305644615 66.949 0.34863 63.623 63.442 63.791 -3.3268 17 9 2 0 0 0 0.55728 1 12619 12619 2.6312 2.618 1 1509800 30222 12618 20183 20192 29786 29786 -0.09989308519220685 MFYKLMFV 8 Unmodified _MFYKLMFV_ 0 0 0 REV__ENSG00000177283|ENST00000374694|FZD8 REV__ENSG00000177283|ENST00000374694|FZD8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2021179199219 3 360.186987 1077.53913 NaN NaN NaN NaN NaN NaN NaN 178.39 1 178.39 177.89 178.89 0 0 0 0 0.21486 1 36956 36956 0.45834 0 1 + 30223 18550 20184 20193 29787 29787 0.0034631833555067715 MGARWARDGPS 11 Unmodified _MGARWARDGPS_ 0 0 0 REV__COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant REV__COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2897338867188 2 602.288014 1202.56147 NaN NaN NaN NaN NaN NaN NaN 68.828 1 65.648 65.148 66.148 -3.1796 0 0 0 0.22632 1 13375 13375 0.026206 0 1 + 30224 13499 20185 20194 29788 29788 -0.03170365942469289 MGCIDPMY 8 Unmodified _MGCIDPMY_ 0 0 0 nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.Q4263Sfs*13|1|0.12|ENSG00000183914|chr17:7832639-7832639|C/-|frameshift_variant;DNAH2|p.K4326Rfs*84|3|0.27|ENSG00000183914|chr17:7832920-7832920|C/-|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2 nc|ENSG00000183914|Q9P225-2|DNAH2 nc|ENSG00000183914|Q9P225-2|DNAH2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25 2 465.181917 928.349282 NaN NaN NaN NaN NaN NaN NaN 45.521 1 42.656 42.156 43.156 -2.8653 0 0 0 0.23749 1 8262 8262 0.62683 0.50396 1 30225 863 20186 20195 29789 29789 -0.11775916669125763 MGDDCNCPCDM 11 Unmodified _MGDDCNCPCDM_ 0 0 0 ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC ENST00000431629.5_2_7:114654517-114655986:+|nuORF ENST00000431629.5_2_7:114654517-114655986:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2975463867188 2 602.165812 1202.31707 NaN NaN NaN NaN NaN NaN NaN 151.59 1 151.59 151.09 152.09 0 0 0 0 0.23698 1 30358 30358 0 0 1 30226 3912 20187 20196 29790 29790 -0.27599440196740943 MGDDCNCPCDM 11 Unmodified _MGDDCNCPCDM_ 0 0 0 ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC ENST00000431629.5_2_7:114654517-114655986:+|nuORF ENST00000431629.5_2_7:114654517-114655986:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.291015625 2 602.165812 1202.31707 NaN NaN NaN NaN NaN NaN NaN 158.41 1 158.41 157.91 158.91 0 0 0 0 0.22632 1 31809 31809 0 0 1 30227 3912 20187 20196 29791 29791 -0.27599440196740943 MGDDCNCPCDM 11 Unmodified _MGDDCNCPCDM_ 0 0 0 ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC ENST00000431629.5_2_7:114654517-114655986:+|nuORF ENST00000431629.5_2_7:114654517-114655986:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.291015625 2 602.165812 1202.31707 NaN NaN NaN NaN NaN NaN NaN 158.42 1 158.42 157.92 158.92 0 0 0 0 0.23698 1 31810 31810 0 0 1 30228 3912 20187 20196 29792 29792 -0.27599440196740943 MGDDCNCPCDM 11 Unmodified _MGDDCNCPCDM_ 0 0 0 ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC ENST00000431629.5_2_7:114654517-114655986:+|nuORF ENST00000431629.5_2_7:114654517-114655986:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2971801757812 2 602.165812 1202.31707 NaN NaN NaN NaN NaN NaN NaN 133.42 1 128.55 128.05 129.05 -4.8726 0 0 0 0.23698 1 25633 25633 0 0 1 30229 3912 20187 20196 29793 29793 -0.27599440196740943 MGFLYLTVY 9 Unmodified _MGFLYLTVY_ 0 0 0 BBOX1|p.F176V|1|0.34|ENSG00000129151|chr11:27093359-27093359|T/G|missense_variant BBOX1|p.F176V|1|0.34|ENSG00000129151|chr11:27093359-27093359|T/G|missense_variant BBOX1|p.F176V|1|0.34|ENSG00000129151|chr11:27093359-27093359|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 369.8695373535156 3 369.524545 1105.5518 -0.35621 -0.00013163 1.1471 0.00042388 0.79089 0.00029225 369.5237556263345 42.968 0.24568 40.249 40.057 40.303 -2.7191 10 6 2 0 0 0 0.52151 1 8014 8014 0.073264 0 1 1093900 30230 301 20188 20197 29794 29794 0.0032505299943750288 MGGGGLHT 8 Unmodified _MGGGGLHT_ 0 0 0 ENSG00000141098|ENST00000268797|GFOD2;nc|ENSG00000141098|Q3B7J2-2|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF ENSG00000141098|ENST00000268797|GFOD2 ENSG00000141098|ENST00000268797|GFOD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 365.17852783203125 2 365.171056 728.327559 NaN NaN NaN NaN NaN NaN NaN 85.837 1 82.109 81.609 82.609 -3.7289 0 0 0 0.2343 1 16405 16405 0.62683 0.3198 1 30231 4348 20189 20198 29795 29795 -0.047472173111714255 MGIQQFRW 8 Unmodified _MGIQQFRW_ 0 0 0 ENST00000377038.7_1_1:10527355-10529253:-|nuORF ENST00000377038.7_1_1:10527355-10529253:-|nuORF ENST00000377038.7_1_1:10527355-10529253:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2697143554688 2 533.268561 1064.52257 0.17015 9.0737E-05 1.2419 0.00066227 1.4121 0.00075301 533.2696479088426 126.87 0.77079 122.25 121.84 122.61 -4.6172 47 21 3 0 0 0 8448 1 25004 25004 3.5871 0 1 2899600 30232 9259 20190 20199 29796 29796 -0.007110465061714422 MGKTLGPEF 9 Unmodified _MGKTLGPEF_ 0 0 0 REV__ENSG00000196730|ENST00000408954|DAPK1 REV__ENSG00000196730|ENST00000408954|DAPK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26495361328125 2 490.249503 978.484453 0.29209 0.0001432 -0.50001 -0.00024513 -0.20792 -0.00010193 490.249246493796 74.583 0.69873 74.583 74.082 74.781 0 26 19 2 0 0 0 0.45972 1 14397 14397 8.1555 6.7005 1 2542400 + 30233 19276 20191 20200 29797 29797 -0.0056497721150208235 MGRVNSSV 8 Unmodified _MGRVNSSV_ 0 0 0 L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|21|3|sense L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|21|3|sense L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|21|3|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23785400390625 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 112.35 1 108.08 107.58 108.58 -4.2725 0 0 0 0.21323 1 21633 21633 14.582 2.0501 1 30234 12019 20192 20201 29798 29798 -0.012835877025963782 MGSAEEDLEE 10 Unmodified _MGSAEEDLEE_ 0 0 0 REV__L1TD1|p.Q683Hfs*3|1|0.25|ENSG00000240563|chr1:62210822-62210823|AG/-|frameshift_variant REV__L1TD1|p.Q683Hfs*3|1|0.25|ENSG00000240563|chr1:62210822-62210823|AG/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 370.4901428222656 3 370.481621 1108.42303 -0.23 -8.521E-05 1.5357 0.00056893 1.3057 0.00048372 370.48212305704203 19.082 0.41843 19.082 18.926 19.344 0 16 11 2 0 0 0 0.52512 1 3124 3124 1.0651 0 1 1561000 + 30235 19781 20193 20202 29799 29799 -0.12683998492116189 MGSDPTNQID 10 Unmodified _MGSDPTNQID_ 0 0 0 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2117919921875 3 359.822089 1076.44444 NaN NaN NaN NaN NaN NaN NaN 71.537 1 68.07 67.57 68.57 -3.467 0 0 0 2.8426 1 13559 13559 1.9064 0 1 30236 867 20194 20203 29800 29800 -0.09072568672763737 MGTSKEKAK 9 Unmodified _MGTSKEKAK_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2662658691406 2 490.265684 978.516816 NaN NaN NaN NaN NaN NaN NaN 80.843 1 77.004 76.504 77.504 -3.8392 0 0 0 0.1964 1 15346 15346 1.2148 1.1855 1 30237 5449 20195 20204 29801 29801 0.02669810191491706 MGVHTHHH 8 Unmodified _MGVHTHHH_ 0 0 0 REV__ENSG00000168916|ENST00000513986|ZNF608 REV__ENSG00000168916|ENST00000513986|ZNF608 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7432861328125 2 478.219403 954.424253 0.014054 6.7207E-06 -1.2405 -0.00059321 -1.2264 -0.00058649 478.21873515477637 24.588 0.37928 23.054 22.85 23.229 -1.5342 18 10 2 0 0 0 0.97173 1 3994 3994 18.135 6.4947 1 942020 + 30238 18066 20196 20205 29802 29802 -0.054782300313718224 MGVLIKLH 8 Unmodified _MGVLIKLH_ 0 0 0 REV__BCAR1|p.R59H|1|0.36|ENSG00000050820|chr16:75242927-75242927|C/T|missense_variant REV__BCAR1|p.R59H|1|0.36|ENSG00000050820|chr16:75242927-75242927|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.4330749511719 3 304.189608 909.546994 NaN NaN NaN NaN NaN NaN NaN 126.21 1 121.61 121.11 122.11 -4.5984 0 0 0 0.21486 1 24884 24884 0.45834 0.10771 1 + 30239 13184 20197 20206 29803 29803 0.08860213647335513 MHPPGSER 8 Unmodified _MHPPGSER_ 0 0 0 REV__nc|ENSG00000124214|O95793-2|STAU1 REV__nc|ENSG00000124214|O95793-2|STAU1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.1912841796875 3 304.144838 909.412685 -0.59619 -0.00018133 -0.28376 -8.6303E-05 -0.87995 -0.00026763 304.14471611353423 88.608 0.74232 88.608 88.257 88.999 0 34 20 2 0 0 0 1.027 1 17255 17255 3.2813 0 1 1783100 + 30240 15764 20198 20207 29804 29804 -0.04564471845355911 MHPPGSER 8 Unmodified _MHPPGSER_ 0 0 0 REV__nc|ENSG00000124214|O95793-2|STAU1 REV__nc|ENSG00000124214|O95793-2|STAU1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 304.144838 909.412685 -0.29839 -9.0755E-05 -0.47733 -0.00014518 -0.77572 -0.00023593 304.1446325674522 92.317 0.70344 88.392 88.09 88.793 -3.9251 -0.12427 1.967E-05 NaN 3.2813 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1613400 + 30241 15764 20198 20207 -0.04564471845355911 MHPPGSER 8 Unmodified _MHPPGSER_ 0 0 0 REV__nc|ENSG00000124214|O95793-2|STAU1 REV__nc|ENSG00000124214|O95793-2|STAU1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 304.144838 909.412685 0.26405 8.0309E-05 -1.0822 -0.00032914 -0.81814 -0.00024883 304.1444787949052 92.681 0.80467 88.538 88.175 88.98 -4.1435 0.02191 -0.00053222 NaN 3.2813 35 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2140700 + 30242 15764 20198 20207 -0.04564471845355911 MHPPGSER 8 Unmodified _MHPPGSER_ 0 0 0 REV__nc|ENSG00000124214|O95793-2|STAU1 REV__nc|ENSG00000124214|O95793-2|STAU1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 304.144838 909.412685 -0.59172 -0.00017997 -0.15075 -4.585E-05 -0.74247 -0.00022582 304.1447671913869 92.335 0.95025 88.526 88.208 89.158 -3.8083 0.010547 0.00031765 NaN 3.2813 36 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1774400 + 30243 15764 20198 20207 -0.04564471845355911 MHQFFYEHNRF 11 Unmodified _MHQFFYEHNRF_ 0 0 0 REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 519.236328125 3 519.234827 1554.68265 NaN NaN NaN NaN NaN NaN NaN 145.01 1 139.94 139.44 140.44 -5.0671 0 0 0 0.22632 1 28003 28003 0.026206 0 1 + 30244 24714 20199 20208 29805 29805 -0.07250163299795531 MHRLIFVY 8 Unmodified _MHRLIFVY_ 0 0 0 PDGFD|p.I214Nfs*5|1|0.23|ENSG00000170962|chr11:103943583-103943584|-/T|frameshift_variant;nc|ENSG00000170962|Q9GZP0-2|PDGFD;ENSG00000170962|ENST00000393158|PDGFD PDGFD|p.I214Nfs*5|1|0.23|ENSG00000170962|chr11:103943583-103943584|-/T|frameshift_variant PDGFD|p.I214Nfs*5|1|0.23|ENSG00000170962|chr11:103943583-103943584|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 3 360.200395 1077.57936 NaN NaN NaN NaN NaN NaN NaN 126.96 1 122.16 121.66 122.66 -4.7958 0 0 0 0.21486 1 24367 24367 1.8442 0.19162 1 30245 6117 20200 20209 29806 29806 0.04367001050354702 MHRNFRKWIFY 11 Unmodified _MHRNFRKWIFY_ 0 0 0 ENSG00000188064|ENST00000339464|WNT7B ENSG00000188064|ENST00000339464|WNT7B ENSG00000188064|ENST00000339464|WNT7B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2763671875 3 533.278479 1596.81361 NaN NaN NaN NaN NaN NaN NaN 156.85 1 151.58 151.08 152.08 -5.2712 0 0 0 0.22632 1 30427 30427 0.172 0 1 30246 7148 20201 20210 29807 29807 0.039072721388947684 MHWFRTWKLME 11 Unmodified _MHWFRTWKLME_ 0 0 0 ENST00000533761.5_2_11:82985654-82991222:-|nuORF ENST00000533761.5_2_11:82985654-82991222:-|nuORF ENST00000533761.5_2_11:82985654-82991222:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2680053710938 3 522.256575 1563.7479 NaN NaN NaN NaN NaN NaN NaN 154.81 1 150.03 149.53 150.53 -4.7791 0 0 0 0.22632 1 30775 30775 0.50596 0.47975 1 30247 11000 20202 20211 29808 29808 -0.01142885098329316 MHYKANTP 8 Unmodified _MHYKANTP_ 0 0 0 REV__ENST00000519230.1_1_5:157413535-157414072:-|nuORF REV__ENST00000519230.1_1_5:157413535-157414072:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.15838623046875 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 179.17 1 174.26 173.76 174.76 -4.9114 0 0 0 0.21486 1 35750 35750 0.79363 0 1 + 30248 22616 20203 20212 29809 29809 -0.03307014668519059 MIELLTSK 8 Unmodified _MIELLTSK_ 0 0 0 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 312.13348388671875 3 312.180778 933.520504 NaN NaN NaN NaN NaN NaN NaN 92.979 1 88.836 88.336 89.336 -4.1435 0 0 0 0.21486 1 17718 17718 1.4819 0 1 30249 25903 20204 20213 29810 29810 0.05108479965349488 MIEPRTLQY 9 Unmodified _MIEPRTLQY_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.312255859375 2 575.799891 1149.58523 0.082824 4.769E-05 -0.19067 -0.00010979 -0.10785 -6.2099E-05 575.7999774500732 92.424 1.5566 92.424 91.949 93.506 0 154 44 6 0 0 0 0.025708 2 17999 17999;18210 86.332 44.354 1 384250000 30250 2284 20205 20214 29811;29812 29811 0.01642054771355106 MIEPRTLQY 9 Unmodified _MIEPRTLQY_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.311279296875 2 575.799891 1149.58523 0.042212 2.4306E-05 -0.31691 -0.00018248 -0.2747 -0.00015817 575.800045839228 96.638 1.2504 92.54 92.108 93.359 -4.0978 149 35 7 0 0 0 0.00017171 2 18890 18890;19066 121.53 61.46 1 550900000 30251 2284 20205 20214 29813;29814 29813 0.01642054771355106 MIEPRTLQY 9 Unmodified _MIEPRTLQY_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3109741210938 2 575.799891 1149.58523 0.22589 0.00013007 -0.4257 -0.00024512 -0.19981 -0.00011505 575.8000088822582 96.724 2.3481 92.489 92.019 94.367 -4.2348 192 67 6 0 0 0 0.56623 1 18388 18388 34.402 11.665 1 606450000 30252 2284 20205 20214 29815 29815 0.01642054771355106 MIEPRTLQY 9 Unmodified _MIEPRTLQY_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3385620117188 2 575.799891 1149.58523 -0.029571 -1.7027E-05 -0.093682 -5.3942E-05 -0.12325 -7.0969E-05 575.8001244488024 96.407 1.3424 92.488 92.056 93.399 -3.9194 149 38 6 0 0 0 0.00017171 2 18586 18586;18598 121.53 66.761 1 496600000 30253 2284 20205 20214 29816;29817 29816 0.01642054771355106 MIEPRTLQY 9 Unmodified _MIEPRTLQY_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3357543945312 2 575.799891 1149.58523 0.097379 5.6071E-05 0.36502 0.00021018 0.4624 0.00026625 575.8000879429479 98.147 0.67699 94.19 93.922 94.599 -3.9564 24 19 2 0 0 0 0.34411 1 18850 18850 29.082 14.5 1 867740 30254 2284 20205 20214 29818 29818 0.01642054771355106 MIEPRTLQY 9 Unmodified _MIEPRTLQY_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3114624023438 2 575.799891 1149.58523 0.15262 8.7878E-05 -1.0247 -0.00059001 -0.87206 -0.00050213 576.3005941081826 98.719 0.33945 94.762 94.631 94.97 -3.9564 10 9 2 0 0 0 0.25183 2 18929 18929;18948 34.402 13.948 1 514380 30255 2284 20205 20214 29819;29820 29819 0.01642054771355106 MIERHYFR 8 Unmodified _MIERHYFR_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B;nc|ENSG00000109103|Q13432-2|UNC119;ENSG00000109103|ENST00000335765|UNC119 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3180541992188 2 576.292568 1150.57058 NaN NaN NaN NaN NaN NaN NaN 101.57 1 97.406 96.906 97.906 -4.1594 0 0 0 0.20462 1 19958 19958 21.747 1.3321 1 30256 6442 20206 20215 29821 29821 0.0013202741386066918 MIFFNLFF 8 Unmodified _MIFFNLFF_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201904296875 3 360.185863 1077.53576 NaN NaN NaN NaN NaN NaN NaN 55.416 1 52.28 51.78 52.78 -3.1352 0 0 0 0.21486 1 10241 10241 4.3292 1.257 1 30257 3029 20207 20216 29822 29822 9.391553203386138E-05 MIFQCPVRT 9 Unmodified _MIFQCPVRT_ 0 0 0 TTF1|p.K279Rfs*144|2|0.29|ENSG00000125482|chr9:132401986-132401986|T/-|frameshift_variant TTF1|p.K279Rfs*144|2|0.29|ENSG00000125482|chr9:132401986-132401986|T/-|frameshift_variant TTF1|p.K279Rfs*144|2|0.29|ENSG00000125482|chr9:132401986-132401986|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7775268554688 2 547.777905 1093.54126 NaN NaN NaN NaN NaN NaN NaN 146.85 1 142.16 141.66 142.66 -4.6868 0 0 0 0.23508 1 29129 29129 10.074 1.4806 1 30258 26534 20208 20217 29823 29823 -0.0017725292661907588 MIIATGYF 8 Unmodified _MIIATGYF_ 0 0 0 REV__ENSG00000221933|ENST00000641663|OR2A25 REV__ENSG00000221933|ENST00000641663|OR2A25 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2349853515625 2 458.235864 914.457176 NaN NaN NaN NaN NaN NaN NaN 40.816 1 38.182 37.682 38.682 -2.6348 0 0 0 0.20568 1 7615 7615 20.871 1.6142 1 + 30259 19711 20209 20218 29824 29824 -0.0034746075189104886 MIIIVVFLKK 10 Unmodified _MIIIVVFLKK_ 0 0 0 tr|U7SU42|U7SU42_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01300PE=3SV=1 tr|U7SU42|U7SU42_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01300PE=3SV=1 tr|U7SU42|U7SU42_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01300PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2847290039062 2 602.398513 1202.78247 NaN NaN NaN NaN NaN NaN NaN 126.33 1 121.53 121.03 122.03 -4.7958 0 0 0 0.22588 1 24246 24246 1.6526 1.0511 1 30260 26185 20210 20219 29825 29825 0.1891930605206653 MIKKKTLLHL 10 Unmodified _MIKKKTLLHL_ 0 0 0 ENST00000226094.9_1_17:66533620-66538255:-|nuORF;ENSG00000108950|ENST00000592554|FAM20A ENST00000226094.9_1_17:66533620-66538255:-|nuORF ENST00000226094.9_1_17:66533620-66538255:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 612.6741333007812 2 612.896669 1223.77878 NaN NaN NaN NaN NaN NaN NaN 178.74 1 173.87 173.37 174.37 -4.8686 0 0 0 2.8426 1 35589 35589 0 0 1 30261 2506 20211 20220 29826 29826 0.1758463627825222 MILDEVHTI 9 Oxidation (M) _M(Oxidation (M))ILDEVHTI_ M(1)ILDEVHTI M(57)ILDEVHTI 0 0 1 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7733154296875 2 543.778625 1085.5427 0.32539 0.00017694 -0.23943 -0.0001302 0.08596 4.6743E-05 543.7782272617719 111.69 0.45594 111.69 111.52 111.97 0 14 12 2 0 0 0 0.095051 1 21938 21938 57.471 27.247 1 945580 30262 5407 20212 20221 29827 29827 83 0.003346596431129001 MILHTFHF 8 Unmodified _MILHTFHF_ 0 0 0 REV__LAMB1|p.T1709Lfs*22|3|0.29|ENSG00000091136|chr7:107924329-107924329|T/-|frameshift_variant;REV__ENSG00000172037|ENST00000305544|LAMB2 REV__LAMB1|p.T1709Lfs*22|3|0.29|ENSG00000091136|chr7:107924329-107924329|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69287109375 2 523.26803 1044.52151 0.19082 9.9852E-05 3.2819 0.0017173 3.4727 0.0018172 523.269121717293 33.664 0.45794 33.664 33.406 33.864 0 22 12 2 0 0 0 0.89552 1 6135 6135 26.341 0 1 906310 + 30263 14564;18268 20213 20222 29828 29828 0.0010273912491811643 MILMMGRK 8 Unmodified _MILMMGRK_ 0 0 0 ENST00000551065.5_1_12:94072789-94287828:+|nuORF ENST00000551065.5_1_12:94072789-94287828:+|nuORF ENST00000551065.5_1_12:94072789-94287828:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2660217285156 2 490.266119 978.517684 NaN NaN NaN NaN NaN NaN NaN 47.914 1 45.045 44.545 45.545 -2.869 0 0 0 0.22847 1 9060 9060 10.074 0 1 30264 11179 20214 20223 29829 29829 0.027566100352032663 MILMMGRK 8 Unmodified _MILMMGRK_ 0 0 0 ENST00000551065.5_1_12:94072789-94287828:+|nuORF ENST00000551065.5_1_12:94072789-94287828:+|nuORF ENST00000551065.5_1_12:94072789-94287828:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2662048339844 2 490.266119 978.517684 NaN NaN NaN NaN NaN NaN NaN 48.349 1 45.48 44.98 45.98 -2.869 0 0 0 0.22847 1 9145 9145 10.074 1.9184 1 30265 11179 20214 20223 29830 29830 0.027566100352032663 MIPVFPPD 8 Unmodified _MIPVFPPD_ 0 0 0 ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;SOX5|p.K639Sfs*77|1|0.78|ENSG00000134532|chr12:23536525-23536525|T/-|frameshift_variant;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5 ENST00000535530.5_1_12:23716331-23887638:-|nuORF ENST00000535530.5_1_12:23716331-23887638:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2352600097656 2 458.235864 914.457176 NaN NaN NaN NaN NaN NaN NaN 161.36 1 161.36 160.86 161.86 0 0 0 0 0.23294 1 32410 32410 0.30703 0 1 30266 3859 20215 20224 29831 29831 -0.0034746075189104886 MISSGLQII 9 Unmodified _MISSGLQII_ 0 0 0 PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant;PHKB|p.N422Ifs*52|1|0.46|ENSG00000102893|chr16:47596427-47596427|A/-|frameshift_variant;PHKB|p.G644Efs*2|1|0.12|ENSG00000102893|chr16:47650874-47650874|A/-|frameshift_variant;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2542724609375 2 481.272978 960.531403 0.30726 0.00014787 -0.58738 -0.00028269 -0.28012 -0.00013482 481.2726659326567 102.78 0.38246 98.462 98.254 98.637 -4.3208 15 10 2 0 0 0 0.6329 1 19639 19639 10.824 0.75 1 853920 30267 2150 20216 20225 29832 29832 0.04955882339629625 MIVGSGGDLI 10 Unmodified _MIVGSGGDLI_ 0 0 0 REV__ENSG00000144369|ENST00000304698|FAM171B REV__ENSG00000144369|ENST00000304698|FAM171B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25372314453125 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 78.645 1 74.84 74.34 75.34 -3.8048 0 0 0 0.21574 1 14916 14916 25.399 4.9457 1 + 30268 16778 20217 20226 29833 29833 0.013190054429401243 MIVKLLKKIG 10 Unmodified _MIVKLLKKIG_ 0 0 0 ENST00000369475.7_1_6:89650800-89650860:-|nuORF ENST00000369475.7_1_6:89650800-89650860:-|nuORF ENST00000369475.7_1_6:89650800-89650860:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 571.8814697265625 2 571.888312 1141.76207 NaN NaN NaN NaN NaN NaN NaN 10.917 1 9.8508 9.3508 10.351 -1.0664 0 0 0 0.22588 1 1206 1206 0 0 1 30269 9120 20218 20227 29834 29834 0.1968613539229409 MIWHWKTMK 9 Unmodified _MIWHWKTMK_ 0 0 0 ENST00000373220.7_1_1:36208769-36208820:-|nuORF ENST00000373220.7_1_1:36208769-36208820:-|nuORF ENST00000373220.7_1_1:36208769-36208820:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7523193359375 2 630.822647 1259.63074 NaN NaN NaN NaN NaN NaN NaN 9.2858 1 8.2512 7.7512 8.7512 -1.0347 0 0 0 0.23508 1 934 934 0.45834 0.057624 1 30270 9192 20219 20228 29835 29835 0.011310017527421223 MIYNRFSI 8 Unmodified _MIYNRFSI_ 0 0 0 REV__ENSG00000156502|ENST00000359655|SUPV3L1 REV__ENSG00000156502|ENST00000359655|SUPV3L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2706298828125 2 522.27077 1042.52699 NaN NaN NaN NaN NaN NaN NaN 164.44 1 159.39 158.89 159.89 -5.0446 0 0 0 0.21486 1 32067 32067 8.5933 0.68312 1 + 30271 17262 20220 20229 29836 29836 0.007424179167401235 MKAFKKEL 8 Unmodified _MKAFKKEL_ 0 0 0 nc|ENSG00000168502|Q9Y4B5-2|MTCL1;MTCL1|p.P1448Afs*83|1|0.4|ENSG00000168502|chr18:8824888-8824889|-/G|frameshift_variant;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;MTCL1|p.P1841Lfs*22|1|0.05|ENSG00000168502|chr18:8826071-8826071|C/-|frameshift_variant;MTCL1|p.L1858Wfs*5|1|0.26|ENSG00000168502|chr18:8826125-8826125|C/-|frameshift_variant;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;MTCL1|p.G1084Vfs*116|1|0.23|ENSG00000168502|chr18:8798144-8798144|G/-|frameshift_variant;MTCL1|p.W1259Efs*14|1|0.09|ENSG00000168502|chr18:8813191-8813192|-/GAGCC|frameshift_variant;ENST00000517554.1_1_18:8784664-8786368:+|nuORF nc|ENSG00000168502|Q9Y4B5-2|MTCL1 nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.0052795410156 3 332.196651 993.568123 NaN NaN NaN NaN NaN NaN NaN 84.205 1 80.296 79.796 80.796 -3.9093 0 0 0 0.21486 1 16004 16004 1.6526 0 1 30272 5915 20221 20230 29837 29837 0.07108178956207212 MKASQEVLH 9 Unmodified _MKASQEVLH_ 0 0 0 ENST00000550135.5_1_19:58518922-58519024:+|nuORF ENST00000550135.5_1_19:58518922-58519024:+|nuORF ENST00000550135.5_1_19:58518922-58519024:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2738647460938 2 521.771134 1041.52771 -0.14844 -7.7454E-05 0.25262 0.00013181 0.10418 5.4356E-05 521.771269089703 81.057 1.3616 77.369 76.719 78.081 -3.6879 72 38 3 0 0 0 0.55979 1 15380 15380 15.847 1.9411 1 6052900 30273 11172 20222 20231 29838 29838 0.008612125657919023 MKDFQVYL 8 Unmodified _MKDFQVYL_ 0 0 0 tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1 tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1 tr|U7SPH1|U7SPH1_FUSNUGeranyltranstransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01735PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2623901367188 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 128.51 1 123.69 123.19 124.19 -4.817 0 0 0 0.23538 1 24668 24668 0.12286 0 1 30274 26045 20223 20232 29839 29839 -0.0038040417739466648 MKEDQKQNE 9 Unmodified _MKEDQKQNE_ 0 0 0 ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1 ENST00000472190.5_1_1:233765551-233807273:+|nuORF ENST00000472190.5_1_1:233765551-233807273:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3294067382812 2 575.26387 1148.51319 0.38849 0.00022348 0.01245 7.1619E-06 0.40094 0.00023065 575.2641025824873 119.97 0.99771 115.5 114.99 115.99 -4.467 62 28 3 0 0 0 0.69259 1 23111 23111 6.7232 0.99131 1 7670900 30275 3949 20224 20233 29840 29840 -0.05512904373040328 MKEDQKQNE 9 Unmodified _MKEDQKQNE_ 0 0 0 ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1 ENST00000472190.5_1_1:233765551-233807273:+|nuORF ENST00000472190.5_1_1:233765551-233807273:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.26387 1148.51319 0.27865 0.0001603 1.0121 0.00058222 1.2908 0.00074252 575.2642751442315 115.46 0.77245 115.46 115.06 115.84 0 -0.04639 0.0006913 NaN 6.7232 38 21 2 NaN NaN NaN NaN 0 NaN NaN 0 4582000 30276 3949 20224 20233 -0.05512904373040328 MKEDQKQNE 9 Unmodified _MKEDQKQNE_ 0 0 0 ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1 ENST00000472190.5_1_1:233765551-233807273:+|nuORF ENST00000472190.5_1_1:233765551-233807273:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 575.26387 1148.51319 0.25898 0.00014898 0.65499 0.00037679 0.91397 0.00052577 575.2641783288988 120.11 0.73257 115.59 115.19 115.92 -4.5221 0.083263 0.00028044 NaN 6.7232 51 20 3 NaN NaN NaN NaN 0 NaN NaN 0 7730300 30277 3949 20224 20233 -0.05512904373040328 MKEDQKQNE 9 Unmodified _MKEDQKQNE_ 0 0 0 ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1 ENST00000472190.5_1_1:233765551-233807273:+|nuORF ENST00000472190.5_1_1:233765551-233807273:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 575.26387 1148.51319 0.68794 0.00039575 0.30293 0.00017427 0.99087 0.00057001 575.2641140995419 120.11 0.98209 115.47 115.13 116.11 -4.645 -0.034374 -0.00012461 NaN 6.7232 57 27 3 NaN NaN NaN NaN 0 NaN NaN 0 6782300 30278 3949 20224 20233 -0.05512904373040328 MKEDQKQNE 9 Unmodified _MKEDQKQNE_ 0 0 0 ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1 ENST00000472190.5_1_1:233765551-233807273:+|nuORF ENST00000472190.5_1_1:233765551-233807273:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.26387 1148.51319 0.38849 0.00022348 0.01245 7.1619E-06 0.40094 0.00023065 575.2641025824873 119.97 0.99771 115.5 114.99 115.99 -4.467 -0.0024986 -0.00045882 NaN 6.7232 62 28 3 NaN NaN NaN NaN 0 NaN NaN 0 7670900 30279 3949 20224 20233 -0.05512904373040328 MKEEDQQDE 9 Unmodified _MKEEDQQDE_ 0 0 0 REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3355712890625 2 576.229693 1150.44483 NaN NaN NaN NaN NaN NaN NaN 130.32 1 125.55 125.05 126.05 -4.7725 0 0 0 0.23508 1 25079 25079 6.7232 1.4925 1 + 30280 15722 20225 20234 29841 29841 -0.12437193743539865 MKEEIQKKEV 10 Unmodified _MKEEIQKKEV_ 0 0 0 ENST00000533654.5_1_1:150192985-150202975:-|nuORF ENST00000533654.5_1_1:150192985-150202975:-|nuORF ENST00000533654.5_1_1:150192985-150202975:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.767822265625 2 631.344663 1260.67477 0.87237 0.00055077 -0.96536 -0.00060947 -0.09299 -5.8709E-05 631.3458561959628 74.666 0.14388 71.301 71.199 71.342 -3.3643 5 3 2 0 0 0 1.1339 1 14555 14555 0.043787 0 1 655170 30281 10998 20226 20235 29842 29842 0.05486264660044071 MKEKLDKME 9 Unmodified _MKEKLDKME_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3289794921875 2 576.293585 1150.57262 0.29187 0.0001682 -4.3932 -0.0025318 -4.1013 -0.0023636 576.7926323114859 123.2 0.39008 123.2 123.03 123.42 0 13 10 2 0 0 0 0.58804 1 24269 24269 13.906 2.4113 1 2061500 + 30282 14286 20227 20236 29843 29843 0.0033527531679737876 MKEKLDKME 9 Unmodified _MKEKLDKME_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3314819335938 2 576.293585 1150.57262 NaN NaN NaN NaN NaN NaN NaN 119.91 1 119.91 119.41 120.41 0 0 0 0 0.23508 1 23629 23629 9.3831 2.66 1 + 30283 14286 20227 20236 29844 29844 0.0033527531679737876 MKEKLDKME 9 Unmodified _MKEKLDKME_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3174438476562 2 576.293585 1150.57262 0.42993 0.00024777 -3.492 -0.0020124 -3.0621 -0.0017646 576.7923802583588 118.63 0.70421 114.22 113.82 114.52 -4.4088 34 19 3 0 0 0 0.77734 1 22852 22852 13.906 2.2658 1 5878600 + 30284 14286 20227 20236 29845 29845 0.0033527531679737876 MKFDCNYYHR 10 Unmodified _MKFDCNYYHR_ 0 0 0 REV__nc|ENSG00000130177|Q13042-4|CDC16 REV__nc|ENSG00000130177|Q13042-4|CDC16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24359130859375 3 459.533997 1375.58016 0.46532 0.00021383 0.86068 0.00039551 1.326 0.00060934 459.86888739905487 119.06 0.59566 114.42 114.11 114.71 -4.645 46 16 4 0 0 0 0.52989 1 22833 22833 1.9064 1.8802 1 3824700 + 30285 15989 20228 20237 29846 29846 -0.09260572362927633 MKFFLICSY 9 Unmodified _MKFFLICSY_ 0 0 0 REV__ENST00000209875.8_1_12:54634211-54634445:-|nuORF REV__ENST00000209875.8_1_12:54634211-54634445:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3319702148438 2 576.285031 1150.55551 0.72839 0.00041976 -3.6976 -0.0021309 -2.9692 -0.0017111 576.7835627843094 120.37 0.10547 115.72 115.66 115.76 -4.645 4 2 2 0 0 0 0.6329 1 23107 23107 10.824 0.75 1 982930 + 30286 19996 20229 20238 29847 29847 -0.013746004983431703 MKFRNSIGN 9 Unmodified _MKFRNSIGN_ 0 0 0 ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant;ERICH3|p.P407Tfs*7|2|0.18|ENSG00000178965|chr1:74606871-74606872|-/T|frameshift_variant;ERICH3|p.S513Ifs*2|1|0.49|ENSG00000178965|chr1:74599884-74599885|-/T|frameshift_variant;nc|ENSG00000178965|Q5RHP9-3|ERICH3;ERICH3|p.E543Rfs*3|1|0.13|ENSG00000178965|chr1:74599794-74599795|-/T|frameshift_variant;ERICH3|p.E543Rfs*16|1|0.36|ENSG00000178965|chr1:74599795-74599795|T/-|frameshift_variant;ERICH3|p.R829Kfs*25|1|0.29|ENSG00000178965|chr1:74573224-74573225|-/T|frameshift_variant;ENSG00000178965|ENST00000326665|ERICH3 ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2708129882812 2 533.776751 1065.53895 0.10414 5.559E-05 -0.95494 -0.00050973 -0.8508 -0.00045414 533.7761837119324 118 0.50071 118 117.69 118.19 0 23 13 2 0 0 0 0.47976 1 23217 23217 2.6312 0 1 1932000 30287 11783 20230 20239 29848 29848 0.008800346599400655 MKFVTLLI 8 Unmodified _MKFVTLLI_ 0 0 0 REV__ENSG00000196098|ENST00000354924|OR5K4 REV__ENSG00000196098|ENST00000354924|OR5K4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.1211242675781 3 322.201513 963.582711 NaN NaN NaN NaN NaN NaN NaN 133.36 1 128.49 127.99 128.99 -4.8726 0 0 0 0.21486 1 25620 25620 0 0 1 + 30288 19213 20231 20240 29849 29849 0.0994625110437255 MKIESLHTK 9 Unmodified _MKIESLHTK_ 0 0 0 REV__nc|ENSG00000204519|Q7Z340-3|ZNF551 REV__nc|ENSG00000204519|Q7Z340-3|ZNF551 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7816772460938 2 543.802434 1085.59032 0.16164 8.7898E-05 -3.854 -0.0020958 -3.6924 -0.0020079 543.8006716111843 114.45 0.7021 109.89 109.52 110.22 -4.555 30 19 2 0 0 0 0.10573 1 22009 22009 53.833 11.738 1 1449000 + 30289 19540 20232 20241 29850 29850 0.05094358633959928 MKIESLHTK 9 Unmodified _MKIESLHTK_ 0 0 0 REV__nc|ENSG00000204519|Q7Z340-3|ZNF551 REV__nc|ENSG00000204519|Q7Z340-3|ZNF551 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.802434 1085.59032 0.1531 8.3254E-05 -3.1703 -0.001724 -3.0172 -0.0016408 543.8005847433286 114.4 0.70959 109.93 109.47 110.18 -4.4726 -0.045608 0.00023239 NaN 53.833 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2691000 + 30290 19540 20232 20241 0.05094358633959928 MKIKRGKKY 9 Unmodified _MKIKRGKKY_ 0 0 0 ENST00000289371.10_1_2:99985003-99985042:+|nuORF ENST00000289371.10_1_2:99985003-99985042:+|nuORF ENST00000289371.10_1_2:99985003-99985042:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3298950195312 2 576.357711 1150.70087 0.25926 0.00014942 1.4657 0.00084475 1.7249 0.00099417 576.3589566191368 118.56 0.21385 114.06 113.93 114.15 -4.502 9 5 2 0 0 0 0.64208 1 23374 23374 0.073264 0 1 4393800 30291 8467 20233 20242 29851 29851 0.1315462341285638 MKIKRGKKY 9 Unmodified _MKIKRGKKY_ 0 0 0 ENST00000289371.10_1_2:99985003-99985042:+|nuORF ENST00000289371.10_1_2:99985003-99985042:+|nuORF ENST00000289371.10_1_2:99985003-99985042:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3385009765625 2 576.357711 1150.70087 NaN NaN NaN NaN NaN NaN NaN 127.84 1 123.04 122.54 123.54 -4.7958 0 0 0 0.23508 1 24537 24537 2.0598 0 1 30292 8467 20233 20242 29852 29852 0.1315462341285638 MKIQLSRLY 9 Unmodified _MKIQLSRLY_ 0 0 0 REV__ENST00000461101.1_1_4:75026431-75026560:+|nuORF REV__ENST00000461101.1_1_4:75026431-75026560:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3342895507812 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 126.51 1 121.89 121.39 122.39 -4.6172 0 0 0 0.23508 1 24944 24944 11.64 2.8949 1 + 30293 21890 20234 20243 29853 29853 0.08394924422009353 MKKAHRTG 8 Unmodified _MKKAHRTG_ 0 0 0 REV__ENST00000445498.5_1_10:11936426-11936693:-|nuORF REV__ENST00000445498.5_1_10:11936426-11936693:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1700134277344 3 310.176361 927.507254 NaN NaN NaN NaN NaN NaN NaN 178.61 1 173.75 173.25 174.25 -4.8686 0 0 0 0.21486 1 35562 35562 0.40072 0 1 + 30294 21751 20235 20244 29854 29854 0.04060086696631515 MKKFWIFYAHL 11 Unmodified _MKKFWIFYAHL_ 0 0 0 ENST00000374403.3_1_X:69518969-69519020:+|nuORF ENST00000374403.3_1_X:69518969-69519020:+|nuORF ENST00000374403.3_1_X:69518969-69519020:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4024047851562 2 742.399576 1482.7846 NaN NaN NaN NaN NaN NaN NaN 157.49 1 152.21 151.71 152.71 -5.2854 0 0 0 0.23698 1 30564 30564 1.3295 0.13619 1 30295 9217 20236 20245 29855 29855 0.0625173478990746 MKKGKGKK 8 Unmodified _MKKGKGKK_ 0 0 0 REV__CHD5|p.T271M|1|0.36|ENSG00000116254|chr1:6152470-6152470|G/A|missense_variant REV__CHD5|p.T271M|1|0.36|ENSG00000116254|chr1:6152470-6152470|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.031982421875 3 302.196874 903.568792 -0.61902 -0.00018707 0.19458 5.8801E-05 -0.42444 -0.00012827 302.1962605958987 5.4245 1.3833 5.4245 4.3841 5.7674 0 51 38 2 0 0 0 1.0282 1 279 279 0 0 1 66880 + 30296 13401 20237 20246 29856 29856 0.11315018395919196 MKKGKGKK 8 Unmodified _MKKGKGKK_ 0 0 0 REV__CHD5|p.T271M|1|0.36|ENSG00000116254|chr1:6152470-6152470|G/A|missense_variant REV__CHD5|p.T271M|1|0.36|ENSG00000116254|chr1:6152470-6152470|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.0450439453125 3 302.196874 903.568792 -2.2944 -0.00069335 3.4377 0.0010389 1.1433 0.00034551 302.1968050755739 4.8507 0.8197 3.8418 3.6265 4.4462 -1.0089 33 22 2 0 0 0 1.0282 1 194 194 0 0 1 90413 + 30297 13401 20237 20246 29857 29857 0.11315018395919196 MKKISKKK 8 Unmodified _MKKISKKK_ 0 0 0 tr|U7SVN4|U7SVN4_FUSNULipopolysaccharideexportsystemATP-bindingproteinLptBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01284PE=3SV=1 tr|U7SVN4|U7SVN4_FUSNULipopolysaccharideexportsystemATP-bindingproteinLptBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01284PE=3SV=1 tr|U7SVN4|U7SVN4_FUSNULipopolysaccharideexportsystemATP-bindingproteinLptBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01284PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 495.8281555175781 2 495.828255 989.641957 NaN NaN NaN NaN NaN NaN NaN 10.16 1 10.16 9.6604 10.66 0 0 0 0 0.21486 1 1249 1249 0 0 1 30298 26239 20238 20247 29858 29858 0.14672147118540124 MKLEEVVV 8 Unmodified _MKLEEVVV_ 0 0 0 ITCH-PIGU|1|fusion;nc|ENSG00000289720|Q96J02|ITCH;ITCH-PIGU|2|fusion;nc|ENSG00000289720|Q96J02-3|ITCH;ITCH-PIGU|3|fusion;ENSG00000078747|ENST00000374864|ITCH ITCH-PIGU|1|fusion ITCH-PIGU|1|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.18115234375 3 316.180778 945.520504 NaN NaN NaN NaN NaN NaN NaN 168.13 1 168.13 167.63 168.63 0 0 0 0 0.21486 1 34405 34405 1.8442 0 1 30299 11959 20239 20248 29859 29859 0.045564799653675436 MKLEEVVV 8 Unmodified _MKLEEVVV_ 0 0 0 ITCH-PIGU|1|fusion;nc|ENSG00000289720|Q96J02|ITCH;ITCH-PIGU|2|fusion;nc|ENSG00000289720|Q96J02-3|ITCH;ITCH-PIGU|3|fusion;ENSG00000078747|ENST00000374864|ITCH ITCH-PIGU|1|fusion ITCH-PIGU|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1812438964844 3 316.180778 945.520504 NaN NaN NaN NaN NaN NaN NaN 170.55 1 165.68 165.18 166.18 -4.873 0 0 0 0.21486 1 33756 33756 1.8442 0 1 30300 11959 20239 20248 29860 29860 0.045564799653675436 MKLEPYNTF 9 Unmodified _MKLEPYNTF_ 0 0 0 REV__OR5K4|p.T25M|1|0.21|ENSG00000196098|chr3:98353927-98353927|C/T|missense_variant REV__OR5K4|p.T25M|1|0.21|ENSG00000196098|chr3:98353927-98353927|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2225036621094 3 381.523204 1141.54778 NaN NaN NaN NaN NaN NaN NaN 34.843 1 32.503 32.003 33.003 -2.3405 0 0 0 0.23508 1 6406 6406 7.1017 0.90987 1 + 30301 24414 20240 20249 29861 29861 -0.01733036494283624 MKLLLLKLD 9 Unmodified _MKLLLLKLD_ 0 0 0 ENST00000535170.5_1_7:99638839-99639052:+|nuORF ENST00000535170.5_1_7:99638839-99639052:+|nuORF ENST00000535170.5_1_7:99638839-99639052:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7813720703125 2 543.851396 1085.68824 NaN NaN NaN NaN NaN NaN NaN 9.7886 1 8.9944 8.4944 9.4944 -0.79424 0 0 0 0.19631 1 1165 1165 0.20686 0 1 30302 11014 20241 20250 29862 29862 0.1488216722996185 MKLRRFEERQ 10 Unmodified _MKLRRFEERQ_ 0 0 0 nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2377624511719 3 464.922472 1391.74559 -0.2365 -0.00010995 1.7555 0.00081616 1.519 0.00070621 464.9230052497677 34.595 0.31108 32.278 32.083 32.395 -2.3175 19 8 3 0 0 0 0.75844 1 6330 6330 3.0723 0.22898 1 651820 30303 1842 20242 20251 29863 29863 0.06538402488240536 MKLRRFEERQ 10 Unmodified _MKLRRFEERQ_ 0 0 0 nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2571105957031 3 464.922472 1391.74559 0.1496 6.9552E-05 1.555 0.00072295 1.7046 0.0007925 464.923223423286 34.419 0.24014 32.167 32.083 32.324 -2.2527 9 6 2 0 0 0 0.75765 1 6027 6027 3.3196 0.68841 1 1104900 30304 1842 20242 20251 29864 29864 0.06538402488240536 MKPAKNVLIH 10 Unmodified _MKPAKNVLIH_ 0 0 0 REV__ENST00000498256.1_1_8:29489773-29490157:+|nuORF REV__ENST00000498256.1_1_8:29489773-29490157:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3318481445312 2 575.841894 1149.66923 0.34784 0.0002003 2.8449 0.0016382 3.1928 0.0018385 575.8437155621017 148.71 0.33916 143.65 143.37 143.7 -5.0595 13 9 2 0 0 0 0.744 1 28818 28818 6.7232 0.51738 1 2240800 + 30305 22413 20243 20252 29865 29865 0.10038630658914371 MKPQKPGLR 9 Unmodified _MKPQKPGLR_ 0 0 0 ENSG00000262152|ENST00000573315|GREP1 ENSG00000262152|ENST00000573315|GREP1 ENSG00000262152|ENST00000573315|GREP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 352.2086486816406 3 352.211183 1053.61172 NaN NaN NaN NaN NaN NaN NaN 55.067 1 52.183 51.683 52.683 -2.8837 0 0 0 0.1971 1 10527 10527 4.7159 4.1995 1 30306 7965 20244 20253 29866 29866 0.08705788453335117 MKREGKLDNL 10 Unmodified _MKREGKLDNL_ 0 0 0 tr|U7SZQ6|U7SZQ6_FUSNUphosphoserinephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00833PE=4SV=1 tr|U7SZQ6|U7SZQ6_FUSNUphosphoserinephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00833PE=4SV=1 tr|U7SZQ6|U7SZQ6_FUSNUphosphoserinephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00833PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2803344726562 2 602.329347 1202.64414 NaN NaN NaN NaN NaN NaN NaN 131.12 1 131.12 130.62 131.62 0 0 0 0 2.8426 1 25922 25922 0.84494 0.81566 1 30307 26303 20245 20254 29867 29867 0.05092531065702133 MKRGYDNPN 9 Unmodified _MKRGYDNPN_ 0 0 0 ENSG00000151704|ENST00000392666|KCNJ1;nc|ENSG00000151704|P48048-3|KCNJ1;nc|ENSG00000151704|P48048|KCNJ1 ENSG00000151704|ENST00000392666|KCNJ1 ENSG00000151704|ENST00000392666|KCNJ1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7926025390625 2 547.756015 1093.49748 0.5901 0.00032323 -0.28143 -0.00015415 0.30868 0.00016908 547.7558009260897 43.81 0.4501 43.81 43.501 43.951 0 19 12 2 0 0 0 0.7009 1 8162 8162 6.2058 0.44535 1 1241800 30308 4884 20246 20255 29868 29868 -0.045531460994197914 MKRIVSTP 8 Unmodified _MKRIVSTP_ 0 0 0 REV__nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 REV__nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2042236328125 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 135.15 1 130.51 130.01 131.01 -4.6399 0 0 0 0.21486 1 26658 26658 0.40072 0 1 + 30309 18911 20247 20256 29869 29869 0.06402721779363674 MKRKKSPPD 9 Unmodified _MKRKKSPPD_ 0 0 0 REV__ENST00000445995.2_1_9:98055153-98055345:+|nuORF REV__ENST00000445995.2_1_9:98055153-98055345:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.770263671875 2 543.808051 1085.60155 NaN NaN NaN NaN NaN NaN NaN 123.4 1 118.82 118.32 119.32 -4.5757 0 0 0 0.23508 1 24322 24322 11.495 3.3392 1 + 30310 17852 20248 20257 29870 29870 0.06217180728117455 MKRWQKKRRWH 11 Unmodified _MKRWQKKRRWH_ 0 0 0 REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7860107421875 3 547.312405 1638.91539 0.33679 0.00018433 1.7153 0.00093878 2.052 0.0011231 547.3143553590481 157.08 0.34624 157.08 156.86 157.21 0 11 9 2 0 0 0 0.89135 1 31528 31528 0.00056442 0 1 1870000 + 30311 23502 20249 20258 29871 29871 0.12148563281311908 MKRWQKKRRWH 11 Unmodified _MKRWQKKRRWH_ 0 0 0 REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7752685546875 3 547.312405 1638.91539 0.16969 9.2874E-05 2.4538 0.001343 2.6235 0.0014359 547.3127535153621 152.89 0.17134 147.63 147.47 147.64 -5.2669 6 4 2 0 0 0 0.89136 1 29634 29634 0.0072825 0.0072825 1 1774500 + 30312 23502 20249 20258 29872 29872 0.12148563281311908 MKRWQKKRRWH 11 Unmodified _MKRWQKKRRWH_ 0 0 0 REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7720336914062 3 547.312405 1638.91539 0.20096 0.00010999 4.3791 0.0023968 4.5801 0.0025067 547.3142666813058 158.88 0.17897 153.61 153.54 153.72 -5.2748 5 4 2 0 0 0 0.96225 1 30841 30841 0.45452 0.45452 1 616320 + 30313 23502 20249 20258 29873 29873 0.12148563281311908 MKRYLWERYRE 11 Unmodified _MKRYLWERYRE_ 0 0 0 ENSG00000111696|ENST00000392876|NT5DC3 ENSG00000111696|ENST00000392876|NT5DC3 ENSG00000111696|ENST00000392876|NT5DC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7786865234375 3 543.948798 1628.82457 NaN NaN NaN NaN NaN NaN NaN 167.22 1 162.33 161.83 162.83 -4.8916 0 0 0 0.22632 1 32855 32855 0.026206 0 1 30314 2637 20250 20259 29874 29874 0.03530629722536105 MKTGGKAG 8 Unmodified _MKTGGKAG_ 0 0 0 tr|U7SH86|U7SH86_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02197PE=4SV=1 tr|U7SH86|U7SH86_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02197PE=4SV=1 tr|U7SH86|U7SH86_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02197PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2170104980469 2 375.202356 748.390159 NaN NaN NaN NaN NaN NaN NaN 44.196 1 44.196 43.696 44.696 0 0 0 0 0.23487 1 8286 8286 1.7423 1.1154 1 30315 25911 20251 20260 29875 29875 0.005899287570173328 MKTHSGRKV 9 Unmodified _MKTHSGRKV_ 0 0 0 nc|ENSG00000005889|P17010-2|ZFX;ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX;nc|ENSG00000067646|P08048-2|ZFY;nc|ENSG00000067646|P08048-3|ZFY;ENSG00000067646|ENST00000155093|ZFY nc|ENSG00000005889|P17010-2|ZFX nc|ENSG00000005889|P17010-2|ZFX MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2706298828125 2 522.292568 1042.57058 NaN NaN NaN NaN NaN NaN NaN 64.528 1 64.528 64.028 65.028 0 0 0 0 0.23508 1 12423 12423 8.7454 0.15213 1 30316 999 20252 20261 29876 29876 0.05100027413891439 MKTPQDPV 8 Unmodified _MKTPQDPV_ 0 0 0 ENST00000607412.1_1_2:215826578-215826698:+|nuORF ENST00000607412.1_1_2:215826578-215826698:+|nuORF ENST00000607412.1_1_2:215826578-215826698:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2337646484375 2 458.233853 914.453153 NaN NaN NaN NaN NaN NaN NaN 31.97 1 29.822 29.322 30.322 -2.1483 0 0 0 0.2293 1 5525 5525 1.7423 0 1 30317 11761 20253 20262 29877 29877 -0.0074955024559812955 MKWIRNFVDKF 11 Unmodified _MKWIRNFVDKF_ 0 0 0 REV__ENSG00000179144|ENST00000313543|GIMAP7 REV__ENSG00000179144|ENST00000313543|GIMAP7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.39453125 2 742.397564 1482.78058 NaN NaN NaN NaN NaN NaN NaN 175.18 1 170.29 169.79 170.79 -4.8845 0 0 0 0.22632 1 34830 34830 0.65807 0.65212 1 + 30318 18643 20254 20263 29878 29878 0.058496452961662726 MKYGQKITFHG 11 Unmodified _MKYGQKITFHG_ 0 0 0 ENST00000399417.3_1_X:106595227-106595875:-|nuORF ENST00000399417.3_1_X:106595227-106595875:-|nuORF ENST00000399417.3_1_X:106595227-106595875:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2276916503906 3 437.228902 1308.66488 NaN NaN NaN NaN NaN NaN NaN 126.5 1 121.7 121.2 122.2 -4.7958 0 0 0 0.22632 1 24282 24282 1.4551 1.4289 1 30319 9497 20255 20264 29879 29879 0.022891214453011344 MKYLLNFIG 9 Unmodified _MKYLLNFIG_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;MYO7B|p.R1172H|1|0.33|ENSG00000169994|chr2:127622049-127622049|G/A|missense_variant;ENST00000496841.5_1_2:128377972-128392002:+|nuORF nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.1889343261719 3 366.872056 1097.59434 -0.2684 -9.8468E-05 0.2756 0.00010111 0.0072067 2.6439E-06 366.8721570727918 20.039 0.17245 18.714 18.629 18.801 -1.3251 7 4 2 0 0 0 0.6226 1 3105 3105 4.897 0 1 480460 30320 6030 20256 20265 29880 29880 0.04944448127685064 MKYLLNFIG 9 Unmodified _MKYLLNFIG_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;MYO7B|p.R1172H|1|0.33|ENSG00000169994|chr2:127622049-127622049|G/A|missense_variant;ENST00000496841.5_1_2:128377972-128392002:+|nuORF nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 366.872056 1097.59434 -0.25548 -9.373E-05 -0.021462 -7.8739E-06 -0.27695 -0.0001016 366.8721812063295 18.634 0.27998 18.634 18.474 18.754 0 -0.065998 -0.00036036 NaN 4.897 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 793200 30321 6030 20256 20265 0.04944448127685064 MKYLLNFIG 9 Unmodified _MKYLLNFIG_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;MYO7B|p.R1172H|1|0.33|ENSG00000169994|chr2:127622049-127622049|G/A|missense_variant;ENST00000496841.5_1_2:128377972-128392002:+|nuORF nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 366.872056 1097.59434 -8.1195E-05 -2.9788E-08 0.10668 3.9137E-05 0.1066 3.9107E-05 366.87208400047575 20.137 0.24329 18.741 18.653 18.896 -1.3966 0.040637 -0.00021933 NaN 4.897 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 299380 30322 6030 20256 20265 0.04944448127685064 MKYLLNFIG 9 Unmodified _MKYLLNFIG_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;MYO7B|p.R1172H|1|0.33|ENSG00000169994|chr2:127622049-127622049|G/A|missense_variant;ENST00000496841.5_1_2:128377972-128392002:+|nuORF nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 366.872056 1097.59434 -1.5654 -0.00057431 1.4421 0.00052908 -0.12329 -4.5233E-05 367.20703194290417 20.347 0.17603 18.712 18.605 18.781 -1.6351 0.011529 0.0012505 NaN 4.897 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 149790 30323 6030 20256 20265 0.04944448127685064 MLAGPNDR 8 Unmodified _MLAGPNDR_ 0 0 0 ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;nc|ENSG00000070010|Q92890-3|UFD1;ENST00000489406.1_1_22:19455337-19466647:-|nuORF ENSG00000070010|ENST00000263202|UFD1 ENSG00000070010|ENST00000263202|UFD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21630859375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 106.27 1 102.18 101.68 102.68 -4.0913 0 0 0 0.21486 1 20436 20436 6.7232 1.4925 1 30324 1423 20257 20266 29881 29881 -0.023875877025943737 MLAQDSHLL 9 Oxidation (M) _M(Oxidation (M))LAQDSHLL_ M(1)LAQDSHLL M(42)LAQDSHLL 0 0 1 nc|ENSG00000124191|Q96NM4-3|TOX2;nc|ENSG00000124191|Q96NM4|TOX2;ENSG00000124191|ENST00000341197|TOX2;nc|ENSG00000124191|Q96NM4-2|TOX2;KIF3B-TOX2|2|fusion;KIF3B-TOX2|1|fusion nc|ENSG00000124191|Q96NM4-3|TOX2 nc|ENSG00000124191|Q96NM4-3|TOX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2631225585938 2 522.263142 1042.51173 -0.18951 -9.8972E-05 0.0043471 2.2703E-06 -0.18516 -9.6702E-05 522.2632955385546 80.204 0.80809 76.694 76.367 77.176 -3.5102 53 22 3 0 0 0 0.16619 1 15670 15670 41.84 9.5341 1 2804800 30325 3297 20258 20267 29882 29882 50 -0.007824936711358532 MLAQDSHLL 9 Oxidation (M) _M(Oxidation (M))LAQDSHLL_ M(1)LAQDSHLL M(48)LAQDSHLL 0 0 1 nc|ENSG00000124191|Q96NM4-3|TOX2;nc|ENSG00000124191|Q96NM4|TOX2;ENSG00000124191|ENST00000341197|TOX2;nc|ENSG00000124191|Q96NM4-2|TOX2;KIF3B-TOX2|2|fusion;KIF3B-TOX2|1|fusion nc|ENSG00000124191|Q96NM4-3|TOX2 nc|ENSG00000124191|Q96NM4-3|TOX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2630615234375 2 522.263142 1042.51173 -0.12615 -6.5882E-05 0.18521 9.6729E-05 0.059064 3.0847E-05 522.2632576796593 80.391 0.90685 76.715 76.352 77.259 -3.676 48 25 2 0 0 0 0.12505 1 15325 15325 47.749 7.7914 1 3624800 30326 3297 20258 20267 29883 29883 50 -0.007824936711358532 MLASQVPPL 9 Unmodified _MLASQVPPL_ 0 0 0 ENST00000550144.1_1_12:58221318-58223298:-|nuORF;ENST00000551594.1_1_12:58220812-58223346:-|nuORF;ENST00000547701.5_1_12:58220852-58239300:-|nuORF ENST00000550144.1_1_12:58221318-58223298:-|nuORF ENST00000550144.1_1_12:58221318-58223298:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72430419921875 2 478.267696 954.520839 0.037854 1.8104E-05 -0.042459 -2.0307E-05 -0.0046056 -2.2027E-06 478.2676438824442 133.71 1.8777 128.84 128.08 129.96 -4.8726 72 53 2 0 0 0 0.10297 1 25684 25684 54.774 16.622 1 1633900 30327 11144 20259 20268 29884 29884 0.041758996852195196 MLCEVSVEAN 10 Unmodified _MLCEVSVEAN_ 0 0 0 REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7735595703125 2 547.746467 1093.47838 0.52232 0.0002861 -0.58817 -0.00032217 -0.065854 -3.6071E-05 547.7462329574444 117.69 0.784 113.28 112.89 113.68 -4.4088 54 21 3 0 0 0 0.47483 1 22725 22725 0.26539 0 1 6557900 + 30328 22509 20260 20269 29885 29885 -0.0646186350534208 MLCGRPRS 8 Unmodified _MLCGRPRS_ 0 0 0 nc|ENSG00000139163|Q9HBU6-2|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6-2|ETNK1 nc|ENSG00000139163|Q9HBU6-2|ETNK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353820800781 2 460.233664 918.452776 NaN NaN NaN NaN NaN NaN NaN 145.43 1 140.36 139.86 140.86 -5.0671 0 0 0 0.21486 1 28102 28102 9.3474 0.75416 1 30329 12353 20261 20270 29886 29886 -0.00971248446444406 MLDDNNHLI 9 Unmodified _MLDDNNHLI_ 0 0 0 SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant;nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18 SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7850341796875 2 542.758223 1083.50189 0.1347 7.3108E-05 0.70273 0.00038141 0.83742 0.00045452 542.7582396911678 96.082 0.51916 91.89 91.614 92.133 -4.1911 31 14 3 0 0 0 0.2219 1 18342 18342 36.127 9.2434 1 2859900 30330 4357 20262 20271 29887 29887 -0.03651681676501539 MLDDNNHLI 9 Unmodified _MLDDNNHLI_ 0 0 0 SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant;nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18 SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.758223 1083.50189 0.13903 7.5462E-05 0.3051 0.0001656 0.44414 0.00024106 542.7580140285054 91.909 0.56739 91.909 91.659 92.226 0 0.027865 -0.00030354 NaN 36.127 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2955800 30331 4357 20262 20271 -0.03651681676501539 MLDDNNHLI 9 Unmodified _MLDDNNHLI_ 0 0 0 SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant;nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18 SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant SS18|p.G113Vfs*11|1|0.35|ENSG00000141380|chr18:26057636-26057636|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.758223 1083.50189 0.27365 0.00014852 0.40395 0.00021925 0.6776 0.00036777 542.7581178534894 95.859 0.51272 91.81 91.579 92.091 -4.0496 -0.071572 -0.00019624 NaN 36.127 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3061300 30332 4357 20262 20271 -0.03651681676501539 MLDDRAYLV 9 Unmodified _MLDDRAYLV_ 0 0 0 nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;NUP188|p.L837Wfs*19|1|0.15|ENSG00000095319|chr9:128988157-128988157|C/-|frameshift_variant nc|ENSG00000095319|Q5SRE5-2|NUP188 nc|ENSG00000095319|Q5SRE5-2|NUP188 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7801513671875 2 548.278792 1094.54303 0.31361 0.00017195 -0.47701 -0.00026153 -0.1634 -8.9587E-05 548.2786382671746 113.5 0.94086 113.5 113.03 113.97 0 52 26 3 0 0 0 0.52347 1 22316 22316 38.615 19.358 1 6962900 30333 1856 20263 20272 29888 29888 -0.00045920637057861313 MLDDRAYLV 9 Unmodified _MLDDRAYLV_ 0 0 0 nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;NUP188|p.L837Wfs*19|1|0.15|ENSG00000095319|chr9:128988157-128988157|C/-|frameshift_variant nc|ENSG00000095319|Q5SRE5-2|NUP188 nc|ENSG00000095319|Q5SRE5-2|NUP188 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.79296875 2 548.278792 1094.54303 0.3971 0.00021772 -0.3588 -0.00019672 0.038308 2.1003E-05 548.2785859895944 118.08 0.86457 113.57 113.14 114.01 -4.502 51 24 3 0 0 0 0.42092 1 23270 23270 43.982 19.961 1 7652400 30334 1856 20263 20272 29889 29889 -0.00045920637057861313 MLDDRAYLV 9 Unmodified _MLDDRAYLV_ 0 0 0 nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;NUP188|p.L837Wfs*19|1|0.15|ENSG00000095319|chr9:128988157-128988157|C/-|frameshift_variant nc|ENSG00000095319|Q5SRE5-2|NUP188 nc|ENSG00000095319|Q5SRE5-2|NUP188 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7680053710938 2 548.278792 1094.54303 0.4694 0.00025736 -0.49811 -0.0002731 -0.028708 -1.574E-05 548.2785575330797 118.08 0.90027 113.47 113.06 113.96 -4.6106 54 24 3 0 0 0 0.34246 1 22665 22665 47.594 19.108 1 7376900 30335 1856 20263 20272 29890 29890 -0.00045920637057861313 MLDDRAYLV 9 Unmodified _MLDDRAYLV_ 0 0 0 nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;NUP188|p.L837Wfs*19|1|0.15|ENSG00000095319|chr9:128988157-128988157|C/-|frameshift_variant nc|ENSG00000095319|Q5SRE5-2|NUP188 nc|ENSG00000095319|Q5SRE5-2|NUP188 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 548.278792 1094.54303 0.51308 0.00028131 -0.45824 -0.00025124 0.054838 3.0066E-05 548.2784716860172 117.97 0.85429 113.56 113.11 113.96 -4.4088 0.034026 -1.0536E-05 NaN 51.415 55 23 3 NaN NaN NaN NaN 0 NaN NaN 0 5641500 30336 1856 20263 20272 -0.00045920637057861313 MLDKCPFPP 9 Unmodified _MLDKCPFPP_ 0 0 0 ENSG00000180008|ENST00000555846|SOCS4 ENSG00000180008|ENST00000555846|SOCS4 ENSG00000180008|ENST00000555846|SOCS4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.677490234375 2 524.253731 1046.49291 -0.33761 -0.00017699 0.090623 4.7509E-05 -0.24699 -0.00012949 524.2536150000756 35.642 0.69161 33.39 32.985 33.677 -2.2527 39 19 3 0 0 0 0.76271 1 6333 6333 20.454 0 1 4156300 30337 6654 20264 20273 29891 29891 -0.028477465665218915 MLDKCPFPP 9 Unmodified _MLDKCPFPP_ 0 0 0 ENSG00000180008|ENST00000555846|SOCS4 ENSG00000180008|ENST00000555846|SOCS4 ENSG00000180008|ENST00000555846|SOCS4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 524.253731 1046.49291 0.18194 9.5385E-05 -0.78784 -0.00041303 -0.6059 -0.00031764 524.2531991451169 33.272 0.48409 33.272 33.059 33.544 0 -0.066469 -0.00038697 NaN 20.454 35 13 3 NaN NaN NaN NaN 0 NaN NaN 0 5860800 30338 6654 20264 20273 -0.028477465665218915 MLDKCPFPP 9 Unmodified _MLDKCPFPP_ 0 0 0 ENSG00000180008|ENST00000555846|SOCS4 ENSG00000180008|ENST00000555846|SOCS4 ENSG00000180008|ENST00000555846|SOCS4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 524.253731 1046.49291 -0.51493 -0.00026995 0.047098 2.4692E-05 -0.46783 -0.00024526 524.2536653048234 35.734 0.57008 33.34 32.987 33.557 -2.3938 0.0020535 0.00048847 NaN 20.454 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4296200 30339 6654 20264 20273 -0.028477465665218915 MLDKSPIRY 9 Unmodified _MLDKSPIRY_ 0 0 0 ENSG00000164062|ENST00000296456|APEH;ENST00000480772.1_1_3:49720035-49720580:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2047119140625 3 374.870715 1121.59032 -0.4117 -0.00015433 0.2488 9.3266E-05 -0.1629 -6.1067E-05 374.8707554344257 69.567 0.67671 69.567 69.355 70.032 0 29 18 2 0 0 0 0.39591 2 13463 13463;13523 26.021 15.221 1 2778300 30340 5500 20265 20274 29892;29893 29892 0.0343835863395725 MLDKSPIRY 9 Unmodified _MLDKSPIRY_ 0 0 0 ENSG00000164062|ENST00000296456|APEH;ENST00000480772.1_1_3:49720035-49720580:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2048034667969 3 374.870715 1121.59032 -0.34554 -0.00012953 0.22517 8.4408E-05 -0.12037 -4.5123E-05 374.87075709027306 72.98 0.57239 69.669 69.384 69.956 -3.3107 29 15 2 0 0 0 0.18865 4 14239 14193;14239;14275;14283 38.615 25 1 4174700 30341 5500 20265 20274 29894;29895;29896;29897 29895 0.0343835863395725 MLDKSPIRY 9 Unmodified _MLDKSPIRY_ 0 0 0 ENSG00000164062|ENST00000296456|APEH;ENST00000480772.1_1_3:49720035-49720580:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2046813964844 3 374.870715 1121.59032 0.23836 8.9353E-05 -0.47945 -0.00017973 -0.24109 -9.0378E-05 374.8705164212304 73.261 0.71037 69.585 69.222 69.933 -3.6764 39 19 3 0 0 0 0.095704 4 13842 13801;13842;13863;13883 57.249 34.306 1 3066300 30342 5500 20265 20274 29898;29899;29900;29901 29899 0.0343835863395725 MLDKSPIRY 9 Unmodified _MLDKSPIRY_ 0 0 0 ENSG00000164062|ENST00000296456|APEH;ENST00000480772.1_1_3:49720035-49720580:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20501708984375 3 374.870715 1121.59032 -0.31544 -0.00011825 -0.034202 -1.2821E-05 -0.34964 -0.00013107 374.8707068531997 73.235 0.76593 69.696 69.339 70.105 -3.5385 46 21 3 0 0 0 0.080883 2 13917 13862;13917 61.602 31.761 1 3763000 30343 5500 20265 20274 29902;29903 29903 0.0343835863395725 MLDKWEEK 8 Unmodified _MLDKWEEK_ 0 0 0 nc|ENSG00000142973|P13584|CYP4B1;ENSG00000142973|ENST00000371923|CYP4B1 nc|ENSG00000142973|P13584|CYP4B1 nc|ENSG00000142973|P13584|CYP4B1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20166015625 3 360.179437 1077.51648 NaN NaN NaN NaN NaN NaN NaN 8.9623 1 7.8978 7.3978 8.3978 -1.0645 0 0 0 0.21486 1 928 928 0.40072 0 1 30344 4449 20266 20275 29904 29904 -0.019176095283455652 MLDMSVPAV 9 Unmodified _MLDMSVPAV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.254638671875 2 481.737914 961.461275 0.19312 9.3034E-05 -0.11088 -5.3415E-05 0.08224 3.9618E-05 481.7378714544892 156.3 0.62819 151.51 151.11 151.74 -4.7885 30 17 2 0 0 0 0.32599 1 31063 31063 44.407 19.733 1 2790800 30345 2153 20267 20276 29905 29905 -0.020997393204766013 MLDMSVPAV 9 Unmodified _MLDMSVPAV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7691955566406 2 481.737914 961.461275 0.33421 0.000161 -0.35601 -0.00017151 -0.02181 -1.0507E-05 481.7377160462691 156.87 0.53137 151.6 151.23 151.76 -5.2712 24 14 2 0 0 0 0.19188 1 30415 30415 38.151 13.477 1 1952200 30346 2153 20267 20276 29906 29906 -0.020997393204766013 MLDMSVPAV 9 Oxidation (M) _M(Oxidation (M))LDMSVPAV_ M(0.999)LDM(0.001)SVPAV M(30)LDM(-30)SVPAV 0 0 1 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27587890625 2 489.735371 977.456189 0.12999 6.366E-05 -0.38032 -0.00018625 -0.25033 -0.00012259 489.7351364015543 136.34 0.87781 131.7 131.21 132.09 -4.6399 31 24 2 0 0 0 0.18739 1 26903 26903 53.576 27.234 2 1812000 30347 2153 20267 20277 29907 29907 25 -0.03344043183085432 MLDMSVPAV 9 Oxidation (M) _M(Oxidation (M))LDMSVPAV_ M(0.999)LDM(0.001)SVPAV M(30)LDM(-30)SVPAV 0 0 1 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27288818359375 2 489.735371 977.456189 0.1678 8.2177E-05 -0.083888 -4.1083E-05 0.08391 4.1094E-05 489.73529494260765 136.63 0.56064 131.73 131.34 131.9 -4.8951 23 15 2 0 0 0 0.10648 1 26263 26263 53.576 27.234 2 1767000 30348 2153 20267 20277 29908 29908 25 -0.03344043183085432 MLDMSVPAV 9 Oxidation (M) _M(Oxidation (M))LDMSVPAV_ M(0.993)LDM(0.007)SVPAV M(21)LDM(-21)SVPAV 0 0 1 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26495361328125 2 489.735371 977.456189 -0.016071 -7.8707E-06 0.045001 2.2039E-05 0.02893 1.4168E-05 489.735399512546 136.6 0.66895 131.77 131.38 132.05 -4.8307 31 18 2 0 0 0 0.14832 1 26286 26286 44.407 19.733 2 2001000 30349 2153 20267 20277 29909 29909 25 -0.03344043183085432 MLDSHEELY 9 Oxidation (M) _M(Oxidation (M))LDSHEELY_ M(1)LDSHEELY M(67)LDSHEELY 0 0 1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3320922851562 2 576.747521 1151.48049 -0.014698 -8.4773E-06 -0.026127 -1.5069E-05 -0.040825 -2.3546E-05 576.7477497836896 61.807 0.88467 61.807 61.496 62.381 0 57 25 3 0 0 0 0.060164 1 11832 11832 67.344 45.597 1 12945000 30350 899 20268 20278 29910 29910 4 -0.08919111495856669 MLDSHEELY 9 Oxidation (M) _M(Oxidation (M))LDSHEELY_ M(1)LDSHEELY M(71)LDSHEELY 0 0 1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32275390625 2 576.747521 1151.48049 0.043884 2.531E-05 0.2162 0.00012469 0.26008 0.00015 576.7478360106898 65.103 1.0547 62.056 61.589 62.644 -3.047 64 30 3 0 0 0 0.096847 1 12566 12566 71.134 54.191 1 12314000 30351 899 20268 20278 29911 29911 4 -0.08919111495856669 MLDSHEELY 9 Oxidation (M) _M(Oxidation (M))LDSHEELY_ M(1)LDSHEELY M(59)LDSHEELY 0 0 1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33642578125 2 576.747521 1151.48049 0.31374 0.00018095 -0.19505 -0.00011249 0.11869 6.8455E-05 576.7476320895247 65.509 1.1983 62.226 61.521 62.719 -3.2832 93 34 4 0 0 0 0.07121 1 12228 12228 58.679 38.225 1 12359000 30352 899 20268 20278 29912 29912 4 -0.08919111495856669 MLEDEDAEDH 10 Unmodified _MLEDEDAEDH_ 0 0 0 nc|ENSG00000188549|Q6ZUT6-3|CCDC9B;ENST00000558912.1_1_15:40629487-40631275:-|nuORF;ENST00000382688.8_1_15:40627361-40631125:-|nuORF;nc|ENSG00000188549|Q6ZUT6-4|CCDC9B;ENSG00000188549|ENST00000397536|CCDC9B;nc|ENSG00000188549|Q6ZUT6|CCDC9B nc|ENSG00000188549|Q6ZUT6-3|CCDC9B nc|ENSG00000188549|Q6ZUT6-3|CCDC9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2894287109375 2 602.22715 1202.43975 NaN NaN NaN NaN NaN NaN NaN 97.605 1 93.37 92.87 93.87 -4.2348 0 0 0 0.22588 1 18645 18645 6.7232 1.9672 1 30353 7175 20269 20279 29913 29913 -0.15337497606151373 MLEIFRECY 9 Unmodified _MLEIFRECY_ 0 0 0 REV__AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant REV__AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2778930664062 2 602.280477 1202.5464 NaN NaN NaN NaN NaN NaN NaN 48.778 1 45.909 45.409 46.409 -2.869 0 0 0 0.23508 1 9231 9231 7.9102 0.3012 1 + 30354 13091 20270 20280 29914 29914 -0.04676993854673128 MLEKTYKEH 9 Unmodified _MLEKTYKEH_ 0 0 0 nc|ENSG00000100503|Q8N4C6-5|NIN;NIN|p.K1233Rfs*3|1|0.45|ENSG00000100503|chr14:50757332-50757332|T/-|frameshift_variant;NIN|p.N1391Kfs*8|1|0.03|ENSG00000100503|chr14:50756857-50756858|-/AGGAAAACAC|frameshift_variant;nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN nc|ENSG00000100503|Q8N4C6-5|NIN nc|ENSG00000100503|Q8N4C6-5|NIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2560424804688 2 589.797349 1177.58014 0.0082104 4.8425E-06 0.51477 0.00030361 0.52298 0.00030845 589.7976529578002 107.28 0.45301 102.96 102.68 103.14 -4.32 18 12 2 0 0 0 0.19311 1 21112 21112 37.974 0 1 1522900 30355 12254 20271 20281 29915 29915 -0.0015424909124703845 MLEKTYKEH 9 Unmodified _MLEKTYKEH_ 0 0 0 nc|ENSG00000100503|Q8N4C6-5|NIN;NIN|p.K1233Rfs*3|1|0.45|ENSG00000100503|chr14:50757332-50757332|T/-|frameshift_variant;NIN|p.N1391Kfs*8|1|0.03|ENSG00000100503|chr14:50756857-50756858|-/AGGAAAACAC|frameshift_variant;nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN nc|ENSG00000100503|Q8N4C6-5|NIN nc|ENSG00000100503|Q8N4C6-5|NIN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.797349 1177.58014 0.37536 0.00022139 -0.15442 -9.1078E-05 0.22094 0.00013031 589.7971726768267 107.28 0.54578 102.86 102.65 103.2 -4.4121 -0.046495 -0.00056796 NaN 37.974 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1503800 30356 12254 20271 20281 -0.0015424909124703845 MLERLKIY 8 Unmodified _MLERLKIY_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.12|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;NAA15|p.N272I|1|0.25|ENSG00000164134|chr4:139351194-139351194|A/T|missense_variant ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.264892578125 2 533.309895 1064.60524 NaN NaN NaN NaN NaN NaN NaN 69.375 1 65.985 65.485 66.485 -3.3903 0 0 0 0.21486 1 13118 13118 5.7604 0 1 30357 5512 20272 20282 29916 29916 0.07551850501954505 MLEVCTRWL 9 Unmodified _MLEVCTRWL_ 0 0 0 ENSG00000160111|ENST00000443236|CPAMD8;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 ENSG00000160111|ENST00000443236|CPAMD8 ENSG00000160111|ENST00000443236|CPAMD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3177490234375 2 575.791012 1149.56747 0.76232 0.00043894 -0.97707 -0.00056259 -0.21475 -0.00012365 575.790409965031 104.72 0.48823 100.67 100.45 100.94 -4.0543 23 13 2 0 0 0 0.60061 1 20181 20181 13.042 0.51092 1 1474000 30358 5229 20273 20283 29917 29917 -0.0013298375515660155 MLFLIPQERY 10 Unmodified _MLFLIPQERY_ 0 0 0 REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2355651855469 3 437.237286 1308.69003 NaN NaN NaN NaN NaN NaN NaN 62.567 1 62.567 62.067 63.067 0 0 0 0 0.22588 1 12015 12015 11.518 3.5725 1 + 30359 17101 20274 20284 29918 29918 0.04803176247924057 MLFLIPQERY 10 Unmodified _MLFLIPQERY_ 0 0 0 REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23565673828125 3 437.237286 1308.69003 NaN NaN NaN NaN NaN NaN NaN 65.829 1 62.545 62.045 63.045 -3.2832 0 0 0 0.22588 1 12380 12380 11.518 3.5725 1 + 30360 17101 20274 20284 29919 29919 0.04803176247924057 MLFTLAMLF 9 Unmodified _MLFTLAMLF_ 0 0 0 REV__ENSG00000013588|ENST00000014914|GPRC5A REV__ENSG00000013588|ENST00000014914|GPRC5A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7882080078125 2 543.789949 1085.56535 NaN NaN NaN NaN NaN NaN NaN 152.95 1 152.95 152.45 153.45 0 0 0 0 0.19684 1 30641 30641 0.40827 0.3444 1 + 30361 13950 20275 20285 29920 29920 0.025985875070318798 MLGFGYRSL 9 Unmodified _MLGFGYRSL_ 0 0 0 REV__ENSG00000124212|ENST00000244043|PTGIS REV__ENSG00000124212|ENST00000244043|PTGIS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2719116210938 2 522.27077 1042.52699 NaN NaN NaN NaN NaN NaN NaN 74.805 1 71.44 70.94 71.94 -3.3643 0 0 0 0.19512 1 14597 14597 12.241 6.0349 1 + 30362 15763 20276 20286 29921 29921 0.007424179167401235 MLGIKYPIF 9 Unmodified _MLGIKYPIF_ 0 0 0 tr|U7T3J5|U7T3J5_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00431PE=4SV=1 tr|U7T3J5|U7T3J5_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00431PE=4SV=1 tr|U7T3J5|U7T3J5_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00431PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2656860351562 2 541.309364 1080.60417 NaN NaN NaN NaN NaN NaN NaN 142.54 1 137.64 137.14 138.14 -4.8982 0 0 0 0.19679 1 27502 27502 0.87518 0 1 30363 26404 20277 20287 29922 29922 0.06709636133041386 MLGLMFTRA 9 Unmodified _MLGLMFTRA_ 0 0 0 REV__nc|ENSG00000204381|Q6UX15-3|LAYN REV__nc|ENSG00000204381|Q6UX15-3|LAYN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.18505859375 3 347.185757 1038.53544 NaN NaN NaN NaN NaN NaN NaN 133.54 1 128.9 128.4 129.4 -4.6399 0 0 0 0.23508 1 26330 26330 2.4985 0 1 + 30364 24240 20278 20288 29923 29923 0.01771648561702932 MLGLRFIRRL 10 Unmodified _MLGLRFIRRL_ 0 0 0 nc|nan|Q9UFG5-2|C19orf25 nc|nan|Q9UFG5-2|C19orf25 nc|nan|Q9UFG5-2|C19orf25 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.60064697265625 3 425.600782 1273.78052 NaN NaN NaN NaN NaN NaN NaN 170.93 1 166.14 165.64 166.64 -4.7898 0 0 0 2.8426 1 34723 34723 5.8681 0 1 30365 12673 20279 20289 29924 29924 0.15457690086850562 MLGLVMFVRS 10 Unmodified _MLGLVMFVRS_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|175|1|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|175|1|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.32177734375 2 576.81703 1151.61951 -1.599 -0.00092235 -0.81825 -0.00047198 -2.4173 -0.0013943 576.8165441120522 15.045 0.1725 13.834 13.716 13.889 -1.2106 9 4 3 0 0 0 0.91149 1 2025 2025 1.4819 0.15237 1 931930 + 30366 23760 20280 20290 29925 29925 0.04976179658615365 MLHRLTLFG 9 Unmodified _MLHRLTLFG_ 0 0 0 REV__CDC14A|p.F159Lfs*31|1|0.26|ENSG00000079335|chr1:100442949-100442949|T/-|frameshift_variant REV__CDC14A|p.F159Lfs*31|1|0.26|ENSG00000079335|chr1:100442949-100442949|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7919311523438 2 544.307687 1086.60082 0.092757 5.0488E-05 -2.6752 -0.0014561 -2.5824 -0.0014056 544.8080478665727 72.51 0.21445 69.2 69.025 69.24 -3.3107 7 5 2 0 0 0 0.85699 1 14134 14134 0.6015 0 1 702750 + 30367 13336 20281 20291 29926 29926 0.06098386079042939 MLICTLLEF 9 Unmodified _MLICTLLEF_ 0 0 0 ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A ENSG00000110077|ENST00000528851|MS4A6A ENSG00000110077|ENST00000528851|MS4A6A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2640991210938 2 541.784864 1081.55518 0.2109 0.00011426 0.14794 8.015E-05 0.35884 0.00019441 541.7849429588973 115.11 0.72392 110.64 110.36 111.08 -4.4726 39 20 3 0 0 0 0.31673 1 22711 22711 10.824 0 1 4089500 30368 2562 20282 20292 29927 29927 0.01765979781794158 MLICVDAR 8 Unmodified _MLICVDAR_ 0 0 0 REV__tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1 REV__tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2406921386719 2 460.738248 919.461943 -0.011476 -5.2876E-06 -2.2676 -0.0010448 -2.2791 -0.0010501 460.7372857392147 55.585 0.44407 52.448 52.216 52.66 -3.1377 14 12 2 0 0 0 0.99494 1 10283 10283 8.5933 0 1 1131200 + 30369 25324 20283 20293 29928 29928 -0.00100899880783345 MLIFFYFVWIW 11 Unmodified _MLIFFYFVWIW_ 0 0 0 REV__SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant REV__SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2740478515625 3 522.27356 1563.79885 NaN NaN NaN NaN NaN NaN NaN 171.48 1 166.69 166.19 167.19 -4.7898 0 0 0 0.22632 1 34870 34870 0.58532 0.079364 1 + 30370 24640 20284 20294 29929 29929 0.03950387218196738 MLIFFYFVWIW 11 Unmodified _MLIFFYFVWIW_ 0 0 0 REV__SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant REV__SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2715454101562 3 522.27356 1563.79885 NaN NaN NaN NaN NaN NaN NaN 33.821 1 31.675 31.175 32.175 -2.1468 0 0 0 0.22632 1 5911 5911 0.50596 0.33396 1 + 30371 24640 20284 20294 29930 29930 0.03950387218196738 MLIFFYFVWIW 11 Unmodified _MLIFFYFVWIW_ 0 0 0 REV__SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant REV__SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.275390625 3 522.27356 1563.79885 NaN NaN NaN NaN NaN NaN NaN 159 1 153.72 153.22 154.22 -5.2748 0 0 0 0.22632 1 30862 30862 0.50596 0.47975 1 + 30372 24640 20284 20294 29931 29931 0.03950387218196738 MLIFFYFVWIW 11 Unmodified _MLIFFYFVWIW_ 0 0 0 REV__SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant REV__SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2630615234375 3 522.27356 1563.79885 NaN NaN NaN NaN NaN NaN NaN 144.77 1 139.82 139.32 140.32 -4.9445 0 0 0 0.22632 1 27971 27971 0.172 0.077159 1 + 30373 24640 20284 20294 29932 29932 0.03950387218196738 MLIFFYFVWIW 11 Unmodified _MLIFFYFVWIW_ 0 0 0 REV__SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant REV__SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2749633789062 3 522.27356 1563.79885 NaN NaN NaN NaN NaN NaN NaN 169.42 1 164.55 164.05 165.05 -4.873 0 0 0 0.22632 1 33457 33457 1.4551 0.94916 1 + 30374 24640 20284 20294 29933 29933 0.03950387218196738 MLILAKRLL 9 Unmodified _MLILAKRLL_ 0 0 0 REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5533752441406 3 357.575462 1069.70456 NaN NaN NaN NaN NaN NaN NaN 71.058 1 67.809 67.309 68.309 -3.2492 0 0 0 0.19624 1 13831 13831 0.0033805 0 1 + 30375 19721 20285 20295 29934 29934 0.1724929318672821 MLIMLKKILT 10 Unmodified _MLIMLKKILT_ 0 0 0 REV__ENST00000478522.1_1_20:16710709-16713038:+|nuORF REV__ENST00000478522.1_1_20:16710709-16713038:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2940063476562 2 602.382006 1202.74946 NaN NaN NaN NaN NaN NaN NaN 127.73 0.99999 123.11 122.61 123.61 -4.6172 0 0 0 2.8426 1 25188 25188 0.0013812 0 1 + 30376 22143 20286 20296 29935 29935 0.1561935593774706 MLKKKLVG 8 Unmodified _MLKKKLVG_ 0 0 0 ENST00000312561.8_2_12:32138492-32138552:+|nuORF ENST00000312561.8_2_12:32138492-32138552:+|nuORF ENST00000312561.8_2_12:32138492-32138552:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.21783447265625 3 306.205258 915.593944 NaN NaN NaN NaN NaN NaN NaN 89.215 1 89.215 88.715 89.715 0 0 0 0 0.2396 1 17423 17423 0.12286 0 1 30377 8658 20287 20297 29936 29936 0.13277073198491962 MLKKKLVG 8 Unmodified _MLKKKLVG_ 0 0 0 ENST00000312561.8_2_12:32138492-32138552:+|nuORF ENST00000312561.8_2_12:32138492-32138552:+|nuORF ENST00000312561.8_2_12:32138492-32138552:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.2061767578125 3 306.205258 915.593944 NaN NaN NaN NaN NaN NaN NaN 99.028 1 99.028 98.528 99.528 0 0 0 0 0.2396 1 19419 19419 0.12286 0 1 30378 8658 20287 20297 29937 29937 0.13277073198491962 MLKKKLVG 8 Unmodified _MLKKKLVG_ 0 0 0 ENST00000312561.8_2_12:32138492-32138552:+|nuORF ENST00000312561.8_2_12:32138492-32138552:+|nuORF ENST00000312561.8_2_12:32138492-32138552:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.21441650390625 3 306.205258 915.593944 NaN NaN NaN NaN NaN NaN NaN 177.38 1 172.47 171.97 172.97 -4.9088 0 0 0 0.21486 1 35375 35375 0.45834 0 1 30379 8658 20287 20297 29938 29938 0.13277073198491962 MLKKQFSLF 9 Unmodified _MLKKQFSLF_ 0 0 0 REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2200622558594 3 381.219455 1140.63654 NaN NaN NaN NaN NaN NaN NaN 36.456 1 34.108 33.608 34.608 -2.3479 0 0 0 0.23508 1 6446 6446 2.7352 0.64919 1 + 30380 24761 20288 20298 29939 29939 0.0718442353604587 MLKRLCFLQ 9 Unmodified _MLKRLCFLQ_ 0 0 0 REV__ENSG00000124201|ENST00000396105|ZNFX1 REV__ENSG00000124201|ENST00000396105|ZNFX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3273315429688 2 576.325022 1150.63549 NaN NaN NaN NaN NaN NaN NaN 117.71 1 113.21 112.71 113.71 -4.502 0 0 0 0.23508 1 23203 23203 11.64 0.12242 1 + 30381 15762 20289 20299 29940 29940 0.06619885895497646 MLKSNRNG 8 Unmodified _MLKSNRNG_ 0 0 0 REV__EFCAB7|p.F431Lfs*3|2|0.41|ENSG00000203965|chr1:63557186-63557186|T/-|frameshift_variant REV__EFCAB7|p.F431Lfs*3|2|0.41|ENSG00000203965|chr1:63557186-63557186|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2435302734375 2 460.242544 918.470534 NaN NaN NaN NaN NaN NaN NaN 144.98 1 140.31 139.81 140.81 -4.6694 0 0 0 0.21486 1 28727 28727 9.3474 0 1 + 30382 13784 20290 20300 29941 29941 0.008037900800673015 MLLASRPQ 8 Unmodified _MLLASRPQ_ 0 0 0 ENST00000435422.7_1_5:156188230-156188422:+|nuORF ENST00000435422.7_1_5:156188230-156188422:+|nuORF ENST00000435422.7_1_5:156188230-156188422:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2389221191406 2 458.257662 914.500772 NaN NaN NaN NaN NaN NaN NaN 69.324 1 69.324 68.824 69.824 0 0 0 0 0.19342 1 13418 13418 26.884 0 1 30383 9824 20291 20301 29942 29942 0.04010148745248898 MLLAYVVETL 10 Unmodified _MLLAYVVETL_ 0 0 0 REV__USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant REV__USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3192749023438 2 576.322668 1150.63078 NaN NaN NaN NaN NaN NaN NaN 117.89 1 113.38 112.88 113.88 -4.502 0 0 0 0.22588 1 23238 23238 10.074 0.6908 1 + 30384 15779 20292 20302 29943 29943 0.06149280233717036 MLLDAWEQIFI 11 Unmodified _MLLDAWEQIFI_ 0 0 0 nc|ENSG00000006747|Q9Y6U3-3|SCIN;ENSG00000006747|ENST00000297029|SCIN nc|ENSG00000006747|Q9Y6U3-3|SCIN nc|ENSG00000006747|Q9Y6U3-3|SCIN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2425231933594 3 460.240696 1377.70026 NaN NaN NaN NaN NaN NaN NaN 27.356 1 25.601 25.101 26.101 -1.7552 0 0 0 0.22632 1 4575 4575 3.0723 0 1 30385 1013 20293 20303 29944 29944 0.026517391824654624 MLLKEHAPRG 10 Unmodified _MLLKEHAPRG_ 0 0 0 REV__ENSG00000009765|ENST00000344419|IYD REV__ENSG00000009765|ENST00000344419|IYD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3193969726562 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 124.86 1 120.27 119.77 120.77 -4.5984 0 0 0 0.22588 1 24621 24621 12.241 0.74595 1 + 30386 13911 20294 20304 29945 29945 0.05880869619409168 MLLKLLIKD 9 Unmodified _MLLKLLIKD_ 0 0 0 SYNE1|p.S4403L|1|0.39|ENSG00000131018|chr6:152331477-152331477|G/A|missense_variant SYNE1|p.S4403L|1|0.39|ENSG00000131018|chr6:152331477-152331477|G/A|missense_variant SYNE1|p.S4403L|1|0.39|ENSG00000131018|chr6:152331477-152331477|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.79443359375 2 543.851396 1085.68824 NaN NaN NaN NaN NaN NaN NaN 10.109 1 9.3145 8.8145 9.8145 -0.79424 0 0 0 0.23508 1 1233 1233 0.6015 0 1 30387 25808 20295 20305 29946 29946 0.1488216722998459 MLLLLCLI 8 Unmodified _MLLLLCLI_ 0 0 0 REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 466.28948974609375 2 466.289585 930.564618 NaN NaN NaN NaN NaN NaN NaN 162.84 1 162.84 162.34 163.34 0 0 0 0 0.22647 1 32771 32771 2.643 0 1 + 30388 22814 20296 20306 29947 29947 0.09655792857984125 MLLLMAKKKK 10 Unmodified _MLLLMAKKKK_ 0 0 0 ENST00000244745.3_2_6:21596471-21596606:+|nuORF ENST00000244745.3_2_6:21596471-21596606:+|nuORF ENST00000244745.3_2_6:21596471-21596606:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2813720703125 2 602.387622 1202.76069 NaN NaN NaN NaN NaN NaN NaN 81.015 1 77.458 76.958 77.958 -3.557 0 0 0 2.8426 1 15820 15820 0.0013812 0.0013812 1 30389 8203 20297 20307 29948 29948 0.16742178031859112 MLLLMAKKKK 10 Unmodified _MLLLMAKKKK_ 0 0 0 ENST00000244745.3_2_6:21596471-21596606:+|nuORF ENST00000244745.3_2_6:21596471-21596606:+|nuORF ENST00000244745.3_2_6:21596471-21596606:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2947387695312 2 602.387622 1202.76069 NaN NaN NaN NaN NaN NaN NaN 158.13 1 152.85 152.35 153.35 -5.2748 0 0 0 2.8426 1 30692 30692 0.0013812 0.0013812 1 30390 8203 20297 20307 29949 29949 0.16742178031859112 MLLLPLLLLL 10 Unmodified _MLLLPLLLLL_ 0 0 0 nc|ENSG00000164530|Q6UXB8-2|PI16;ENSG00000164530|ENST00000373674|PI16 nc|ENSG00000164530|Q6UXB8-2|PI16 nc|ENSG00000164530|Q6UXB8-2|PI16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3223876953125 2 576.395439 1150.77632 0.55921 0.00032232 2.7431 0.0015811 3.3023 0.0019034 576.3973166304728 118.27 0.14421 113.66 113.6 113.74 -4.6106 5 3 2 0 0 0 0.91149 1 22688 22688 0.45834 0 1 931180 30391 5551 20298 20308 29950 29950 0.20696787820588725 MLLPIDLTY 9 Unmodified _MLLPIDLTY_ 0 0 0 REV__ENSG00000139209|ENST00000266579|SLC38A4 REV__ENSG00000139209|ENST00000266579|SLC38A4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 96.619 1 92.384 91.884 92.884 -4.2348 0 0 0 0.23508 1 18449 18449 2.9952 0.26005 1 + 30392 16508 20299 20309 29951 29951 0.04233322170921383 MLLPRDQPL 9 Unmodified _MLLPRDQPL_ 0 0 0 ENSG00000178814|ENST00000618853|OPLAH;OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant;OPLAH|p.H870Tfs*28|1|0.64|ENSG00000178814|chr8:144054639-144054639|G/-|frameshift_variant ENSG00000178814|ENST00000618853|OPLAH ENSG00000178814|ENST00000618853|OPLAH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.280029296875 2 541.804977 1081.5954 0.30634 0.00016598 -1.7078 -0.00092531 -1.4015 -0.00075933 542.3061054893487 113.1 0.27882 113.1 113 113.28 0 11 7 2 0 0 0 0.80264 1 22233 22233 8.1555 1.9497 1 797190 30393 6593 20300 20310 29952 29952 0.05786662496598183 MLLQVNDVN 9 Unmodified _MLLQVNDVN_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.677490234375 2 523.270967 1044.52738 -0.46002 -0.00024072 0.16318 8.5386E-05 -0.29685 -0.00015533 523.2708252595584 35.809 0.41743 33.556 33.366 33.783 -2.2527 20 11 2 0 0 0 0.60663 1 6333 6333 32.786 2.5609 1 1184100 30394 2423 20301 20311 29953 29953 0.006897928459238756 MLLQVNDVN 9 Unmodified _MLLQVNDVN_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.270967 1044.52738 -0.56645 -0.00029641 0.66198 0.0003464 0.095533 4.999E-05 523.2712573855206 35.921 0.42525 33.527 33.276 33.701 -2.3938 -0.05109 0.00075975 NaN 32.786 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 875030 30395 2423 20301 20311 0.006897928459238756 MLLSHTGKLAL 11 Unmodified _MLLSHTGKLAL_ 0 0 0 ENST00000500112.1_1_8:128221640-128221847:-|nuORF ENST00000500112.1_1_8:128221640-128221847:-|nuORF ENST00000500112.1_1_8:128221640-128221847:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 395.89947509765625 3 395.233765 1182.67946 -0.071979 -2.8449E-05 -0.1293 -5.1102E-05 -0.20128 -7.9551E-05 395.2336290440582 112.73 0.6414 112.73 112.42 113.07 0 45 18 3 0 0 0 0.021748 1 22193 22193 74.48 58.205 1 4360200 30396 10616 20302 20312 29954 29954 0.09543193593526667 MLLSHTGKLAL 11 Unmodified _MLLSHTGKLAL_ 0 0 0 ENST00000500112.1_1_8:128221640-128221847:-|nuORF ENST00000500112.1_1_8:128221640-128221847:-|nuORF ENST00000500112.1_1_8:128221640-128221847:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 395.9022216796875 3 395.233765 1182.67946 -0.098196 -3.881E-05 -0.21956 -8.6776E-05 -0.31775 -0.00012559 395.2336542376846 116.43 0.84912 112.07 111.74 112.58 -4.3585 57 23 3 0 0 0 0.056433 1 22399 22399 61.082 52.33 1 5941900 30397 10616 20302 20312 29955 29955 0.09543193593526667 MLLSHTGKLAL 11 Unmodified _MLLSHTGKLAL_ 0 0 0 ENST00000500112.1_1_8:128221640-128221847:-|nuORF ENST00000500112.1_1_8:128221640-128221847:-|nuORF ENST00000500112.1_1_8:128221640-128221847:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 395.233765 1182.67946 -0.10412 -4.1152E-05 -0.12451 -4.921E-05 -0.22863 -9.0363E-05 395.23367452839267 116.49 0.80408 112 111.65 112.46 -4.486 -0.04149 0.0002007 NaN 61.082 65 22 4 NaN NaN NaN NaN 0 NaN NaN 0 7825000 30398 10616 20302 20312 0.09543193593526667 MLLSHTGKLAL 11 Unmodified _MLLSHTGKLAL_ 0 0 0 ENST00000500112.1_1_8:128221640-128221847:-|nuORF ENST00000500112.1_1_8:128221640-128221847:-|nuORF ENST00000500112.1_1_8:128221640-128221847:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 395.233765 1182.67946 0.31136 0.00012306 -0.52373 -0.00020699 -0.21236 -8.3934E-05 395.2335091620672 116.64 0.91117 112.06 111.59 112.5 -4.5815 0.01529 -0.00027265 NaN 61.082 67 25 4 NaN NaN NaN NaN 0 NaN NaN 0 10243000 30399 10616 20302 20312 0.09543193593526667 MLLTRKIGVLS 11 Unmodified _MLLTRKIGVLS_ 0 0 0 ENST00000451422.1_1_3:15766016-15778544:-|nuORF ENST00000451422.1_1_3:15766016-15778544:-|nuORF ENST00000451422.1_1_3:15766016-15778544:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 615.8323364257812 2 615.883758 1229.75296 NaN NaN NaN NaN NaN NaN NaN 165.17 1 160.22 159.72 160.72 -4.9484 0 0 0 0.2229 1 32258 32258 0.65807 0.59421 1 30400 9977 20303 20313 29956 29956 0.14727742035961455 MLLWKMML 8 Unmodified _MLLWKMML_ 0 0 0 ENST00000480144.5_1_15:59192070-59209171:-|nuORF;ENST00000492526.5_1_15:59204769-59209171:-|nuORF;ENST00000557950.5_1_15:59205840-59209171:-|nuORF ENST00000480144.5_1_15:59192070-59209171:-|nuORF ENST00000480144.5_1_15:59192070-59209171:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2870483398438 2 533.28652 1064.55849 NaN NaN NaN NaN NaN NaN NaN 91.276 1 87.35 86.85 87.85 -3.9251 0 0 0 0.21486 1 17865 17865 11.114 0.29054 1 30401 10351 20304 20314 29957 29957 0.02878951354819037 MLMEELLTN 9 Unmodified _MLMEELLTN_ 0 0 0 tr|U7SLN9|U7SLN9_FUSNUThiaminebiosynthesisproteinThiFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02115PE=4SV=1 tr|U7SLN9|U7SLN9_FUSNUThiaminebiosynthesisproteinThiFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02115PE=4SV=1 tr|U7SLN9|U7SLN9_FUSNUThiaminebiosynthesisproteinThiFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02115PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.768798828125 2 547.267035 1092.51952 -0.013668 -7.4799E-06 0.9859 0.00053955 0.97223 0.00053207 547.2675126056148 43.937 0.79892 41.171 40.83 41.629 -2.7661 56 22 3 0 0 0 0.5059 1 7952 7952 19.257 1.1106 1 4304400 30402 25987 20305 20315 29958 29958 -0.023041024658596143 MLNEVKRAQ 9 Unmodified _MLNEVKRAQ_ 0 0 0 nc|ENSG00000113889|P01042-3|KNG1;nc|ENSG00000113889|P01042-2|KNG1;ENSG00000113889|ENST00000644859|KNG1;KNG1|p.F177V|1|0.1|ENSG00000113889|chr3:186725225-186725225|T/G|missense_variant nc|ENSG00000113889|P01042-3|KNG1 nc|ENSG00000113889|P01042-3|KNG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7796630859375 2 544.797683 1087.58081 0.26328 0.00014344 -0.59626 -0.00032484 -0.33298 -0.00018141 544.7970903631751 73.101 0.57092 69.474 69.164 69.735 -3.6275 21 12 2 0 0 0 0.28246 1 13796 13796 1.2148 0 1 2413600 30403 2768 20306 20316 29959 29959 0.040525903484194714 MLPETREIY 9 Unmodified _MLPETREIY_ 0 0 0 ENST00000476623.1_1_7:23347480-23349159:+|nuORF;ENSG00000156928|ENST00000466681|MALSU1 ENST00000476623.1_1_7:23347480-23349159:+|nuORF ENST00000476623.1_1_7:23347480-23349159:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.315185546875 2 576.291899 1150.56925 0.2988 0.00017219 1.3526 0.00077952 1.6514 0.00095171 576.2919071019788 97.007 0.76622 97.007 96.563 97.329 0 37 21 2 0 0 0 0.34411 1 18955 18955 29.082 2.1979 1 3763800 30404 5109 20307 20317 29960 29960 -1.6514655499122455E-05 MLPETREIY 9 Unmodified _MLPETREIY_ 0 0 0 ENST00000476623.1_1_7:23347480-23349159:+|nuORF;ENSG00000156928|ENST00000466681|MALSU1 ENST00000476623.1_1_7:23347480-23349159:+|nuORF ENST00000476623.1_1_7:23347480-23349159:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3246459960938 2 576.291899 1150.56925 0.3917 0.00022574 1.0024 0.0005777 1.3941 0.00080343 576.2922104053259 100.96 0.87663 96.975 96.753 97.629 -3.9895 52 24 3 0 0 0 0.44932 1 19456 19456 22.736 0.98964 1 3179400 30405 5109 20307 20317 29961 29961 -1.6514655499122455E-05 MLPETREIY 9 Unmodified _MLPETREIY_ 0 0 0 ENST00000476623.1_1_7:23347480-23349159:+|nuORF;ENSG00000156928|ENST00000466681|MALSU1 ENST00000476623.1_1_7:23347480-23349159:+|nuORF ENST00000476623.1_1_7:23347480-23349159:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 576.291899 1150.56925 0.038263 2.2051E-05 1.5333 0.00088365 1.5716 0.00090571 576.2923901444788 101.22 0.6356 97.059 96.766 97.402 -4.1594 0.028013 0.00044241 NaN 29.082 45 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4553000 30406 5109 20307 20317 -1.6514655499122455E-05 MLPETREIY 9 Unmodified _MLPETREIY_ 0 0 0 ENST00000476623.1_1_7:23347480-23349159:+|nuORF;ENSG00000156928|ENST00000466681|MALSU1 ENST00000476623.1_1_7:23347480-23349159:+|nuORF ENST00000476623.1_1_7:23347480-23349159:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.291899 1150.56925 0.42247 0.00024346 0.95551 0.00055065 1.378 0.00079412 576.2920274912914 101.38 0.75726 97.083 96.702 97.46 -4.297 0.052009 -0.00022359 NaN 29.082 49 21 3 NaN NaN NaN NaN 0 NaN NaN 0 4809800 30407 5109 20307 20317 -1.6514655499122455E-05 MLPKEIQA 8 Unmodified _MLPKEIQA_ 0 0 0 nc|ENSG00000176371|Q7Z7L9-4|ZSCAN2;nc|ENSG00000176371|Q7Z7L9-3|ZSCAN2;ENSG00000176371|ENST00000546148|ZSCAN2 nc|ENSG00000176371|Q7Z7L9-4|ZSCAN2 nc|ENSG00000176371|Q7Z7L9-4|ZSCAN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2585144042969 2 465.259871 928.505189 NaN NaN NaN NaN NaN NaN NaN 94.438 1 90.594 90.094 91.094 -3.844 0 0 0 0.20462 1 18119 18119 21.747 5.8995 1 30408 6461 20308 20318 29962 29962 0.038076131681464176 MLPKLLILPL 10 Unmodified _MLPKLLILPL_ 0 0 0 REV__ENST00000393779.2_1_3:17913403-17913661:-|nuORF REV__ENST00000393779.2_1_3:17913403-17913661:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3229370117188 2 575.885238 1149.75592 NaN NaN NaN NaN NaN NaN NaN 99.059 1 94.79 94.29 95.29 -4.2692 0 0 0 2.8426 1 18937 18937 0 0 1 + 30409 21241 20309 20319 29963 29963 0.18703617160781505 MLQDPLTAPG 10 Unmodified _MLQDPLTAPG_ 0 0 0 REV__nc|ENSG00000102908|O94916-2|NFAT5 REV__nc|ENSG00000102908|O94916-2|NFAT5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2670288085938 2 521.765517 1041.51648 -0.55415 -0.00028914 1.3947 0.00072769 0.84052 0.00043855 521.7658433637488 16.765 1.5244 15.549 15.01 16.534 -1.2159 66 43 2 0 0 0 0.71778 1 2571 2571 9.3831 1.2276 1 441660 + 30410 14853 20310 20320 29964 29964 -0.0026160952838836238 MLQEGKGPIN 10 Unmodified _MLQEGKGPIN_ 0 0 0 ENST00000431289.1_3_7:44179379-44180021:-|nuORF;ENSG00000106631|ENST00000223364|MYL7 ENST00000431289.1_3_7:44179379-44180021:-|nuORF ENST00000431289.1_3_7:44179379-44180021:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7830200195312 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 150.83 1 150.83 150.33 151.33 0 0 0 0 2.8426 1 30201 30201 0.20733 0.17804 1 30411 2397 20311 20321 29965 29965 0.014574817372704274 MLQLLLHRK 9 Unmodified _MLQLLLHRK_ 0 0 0 nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56 nc|ENSG00000136271|Q9NY93-2|DDX56 nc|ENSG00000136271|Q9NY93-2|DDX56 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3299560546875 2 576.357711 1150.70087 NaN NaN NaN NaN NaN NaN NaN 128.74 1 123.92 123.42 124.42 -4.817 0 0 0 0.23508 1 24713 24713 4.756 0 1 30412 4000 20312 20322 29966 29966 0.1315462341285638 MLQSLAQRP 9 Unmodified _MLQSLAQRP_ 0 0 0 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.259521484375 2 522.286951 1042.55935 NaN NaN NaN NaN NaN NaN NaN 157.6 1 152.81 152.31 153.31 -4.7885 0 0 0 0.23508 1 31342 31342 6.7232 0.36906 1 30413 4868 20313 20323 29967 29967 0.039772053197111745 MLRHNYPR 8 Unmodified _MLRHNYPR_ 0 0 0 REV__ENSG00000116147|ENST00000367674|TNR REV__ENSG00000116147|ENST00000367674|TNR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7839965820312 2 543.78491 1085.55527 NaN NaN NaN NaN NaN NaN NaN 52.698 1 49.611 49.111 50.111 -3.0876 0 0 0 0.23312 1 9693 9693 6.2058 1.3088 1 + 30414 15470 20314 20324 29968 29968 0.015911606166582715 MLRTAQIRY 9 Unmodified _MLRTAQIRY_ 0 0 0 REV__SLC8A1|p.G554Wfs*22|1|0.34|ENSG00000183023|chr2:40428621-40428622|-/A|frameshift_variant REV__SLC8A1|p.G554Wfs*22|1|0.34|ENSG00000183023|chr2:40428621-40428622|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3309936523438 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 126.39 1 126.39 125.89 126.89 0 0 0 0 0.22193 1 24941 24941 17.113 7.7298 1 + 30415 15541 20315 20325 29969 29969 0.05880869619409168 MLSAIQSEVA 10 Oxidation (M) _M(Oxidation (M))LSAIQSEVA_ M(1)LSAIQSEVA M(54)LSAIQSEVA 0 0 1 nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 nc|ENSG00000116750|Q9Y5K5-2|UCHL5 nc|ENSG00000116750|Q9Y5K5-2|UCHL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27001953125 2 532.768257 1063.52196 0.51188 0.00027272 -0.53718 -0.00028619 -0.025292 -1.3475E-05 532.7678807952265 36.593 0.9304 34.245 33.757 34.687 -2.3479 58 26 3 0 0 0 0.12336 1 6513 6513 53.833 13.883 1 2993800 30416 2951 20316 20326 29970 29970 38 -0.007259307365302448 MLSAIQSEVA 10 Oxidation (M) _M(Oxidation (M))LSAIQSEVA_ M(1)LSAIQSEVA M(50)LSAIQSEVA 0 0 1 nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 nc|ENSG00000116750|Q9Y5K5-2|UCHL5 nc|ENSG00000116750|Q9Y5K5-2|UCHL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2838134765625 2 532.768257 1063.52196 0.32129 0.00017117 -0.40414 -0.00021531 -0.082853 -4.4141E-05 532.768017663903 36.528 1.0972 34.19 33.677 34.774 -2.3375 78 30 3 0 0 0 0.13946 1 6499 6499 49.933 6.1606 1 3154700 30417 2951 20316 20326 29971 29971 38 -0.007259307365302448 MLSQDAPTV 9 Unmodified _MLSQDAPTV_ 0 0 0 ENSG00000104320|ENST00000265433|NBN;NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23651123046875 2 481.236593 960.458632 0.01144 5.5053E-06 -0.52721 -0.00025371 -0.51577 -0.00024821 481.23630111684673 76.625 0.83253 73.21 72.83 73.662 -3.4151 62 23 3 0 0 0 0.026664 3 14965 14937;14961;14965 85.272 43.329 1 6351100 30418 2227 20317 20327 29972;29973;29974 29974 -0.023178714537948508 MLSQDAPTV 9 Unmodified _MLSQDAPTV_ 0 0 0 ENSG00000104320|ENST00000265433|NBN;NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2364196777344 2 481.236593 960.458632 0.084425 4.0628E-05 -0.45929 -0.00022102 -0.37486 -0.0001804 481.2363737643982 77.071 0.73269 73.305 72.912 73.644 -3.7664 50 20 3 0 0 0 0.067773 2 14619 14574;14619 65.235 19.214 1 4851200 30419 2227 20317 20327 29975;29976 29976 -0.023178714537948508 MLSQDAPTV 9 Unmodified _MLSQDAPTV_ 0 0 0 ENSG00000104320|ENST00000265433|NBN;NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2365417480469 2 481.236593 960.458632 0.064178 3.0885E-05 -0.81212 -0.00039082 -0.74794 -0.00035994 481.23634846735433 76.915 0.63784 73.256 72.97 73.607 -3.6588 44 17 3 0 0 0 0.070777 1 14653 14653 36.81 30.323 1 5610500 30420 2227 20317 20327 29977 29977 -0.023178714537948508 MLTEIEHKV 9 Unmodified _MLTEIEHKV_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 366.8045654296875 3 367.19872 1098.57433 -0.35811 -0.0001315 0.14676 5.3889E-05 -0.21135 -7.7608E-05 367.19864192066007 68.145 0.72564 64.754 64.355 65.081 -3.3903 36 20 3 0 0 0 0.27464 1 12894 12894 29.082 28.016 1 1122000 30421 1266 20318 20328 29978 29978 0.028986523970615963 MLTEIEHKV 9 Unmodified _MLTEIEHKV_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 367.19872 1098.57433 -0.2949 -0.00010829 -0.067932 -2.4945E-05 -0.36283 -0.00013323 367.1986705337977 67.823 0.54846 64.714 64.421 64.969 -3.1086 -0.038984 -6.8533E-05 NaN 29.082 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2090800 30422 1266 20318 20328 0.028986523970615963 MLTEIEHKV 9 Unmodified _MLTEIEHKV_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 367.19872 1098.57433 0.32795 0.00012042 -0.19777 -7.262E-05 0.13018 4.7803E-05 367.1985194159489 68.327 0.34752 64.791 64.623 64.971 -3.5362 0.038062 -0.00021156 NaN 29.082 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1832100 30423 1266 20318 20328 0.028986523970615963 MLVALQRSI 9 Unmodified _MLVALQRSI_ 0 0 0 ENST00000500813.6_1_4:183812171-183812324:-|nuORF ENST00000500813.6_1_4:183812171-183812324:-|nuORF ENST00000500813.6_1_4:183812171-183812324:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.2068786621094 3 344.207438 1029.60049 NaN NaN NaN NaN NaN NaN NaN 94.461 1 90.27 89.77 90.77 -4.1911 0 0 0 0.23508 1 18018 18018 1.1933 0.12188 1 30424 10618 20319 20329 29979 29979 0.08686966359186954 MLVKLEENA 9 Unmodified _MLVKLEENA_ 0 0 0 REV__ENSG00000183434|ENST00000310125|TFDP3 REV__ENSG00000183434|ENST00000310125|TFDP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6795654296875 2 523.781167 1045.54778 -0.41898 -0.00021945 -2.5923 -0.0013578 -3.0112 -0.0015772 523.7798092433646 149.98 0.76266 144.78 144.5 145.27 -5.1994 25 21 2 0 0 0 0.48644 1 29007 29007 20.454 4.6064 1 1997500 + 30425 18836 20320 20330 29980 29980 0.026829635057310952 MLVKLEENA 9 Unmodified _MLVKLEENA_ 0 0 0 REV__ENSG00000183434|ENST00000310125|TFDP3 REV__ENSG00000183434|ENST00000310125|TFDP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.781167 1045.54778 0.18589 9.7364E-05 -2.3865 -0.00125 -2.2006 -0.0011526 524.2813394485281 144.63 0.14352 144.63 144.51 144.65 0 -0.075322 0.00015335 NaN 20.454 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2210500 + 30426 18836 20320 20330 0.026829635057310952 MLWHLFKA 8 Unmodified _MLWHLFKA_ 0 0 0 REV__nc|ENSG00000164362|O14746-4|TERT REV__nc|ENSG00000164362|O14746-4|TERT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6875 2 523.286223 1044.55789 0.076487 4.0025E-05 1.4454 0.00075638 1.5219 0.0007964 523.2874363316869 71.578 0.84182 71.578 71.214 72.056 0 78 23 5 0 0 0 0.40661 1 13850 13850 32.117 0.84863 1 17846000 + 30427 17678 20321 20331 29981 29981 0.037396160216530916 MLWMAEVY 8 Unmodified _MLWMAEVY_ 0 0 0 REV__ENST00000531690.5_1_6:1717847-1960173:-|nuORF REV__ENST00000531690.5_1_6:1717847-1960173:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2610473632812 2 521.740457 1041.46636 -0.11792 -6.1522E-05 0.23451 0.00012235 0.11659 6.083E-05 521.740302319785 151.03 0.38536 146.28 146.18 146.57 -4.7523 14 10 2 0 0 0 0.49844 1 29982 29982 28.173 1.2896 1 2133300 + 30428 15309 20322 20332 29982 29982 -0.05271435457871121 MLYPEYHKV 9 Unmodified _MLYPEYHKV_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 394.1032409667969 3 393.867082 1178.57942 -0.32996 -0.00012996 0.1702 6.7036E-05 -0.15976 -6.2923E-05 393.86715285746965 69.413 0.45755 69.413 69.214 69.672 0 19 12 2 0 0 0 0.69259 1 13421 13421 4.1895 1.3462 1 2660800 30429 4335 20323 20333 29983 29983 -0.0027304374032155465 MLYPEYHKV 9 Unmodified _MLYPEYHKV_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 393.867082 1178.57942 -0.31548 -0.00012426 0.25145 9.904E-05 -0.064029 -2.5219E-05 393.8670526746364 72.944 0.57285 69.633 69.312 69.885 -3.3107 0.11908 0.00028369 NaN 4.1895 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1068200 30430 4335 20323 20333 -0.0027304374032155465 MLYPEYHKV 9 Unmodified _MLYPEYHKV_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 393.867082 1178.57942 0.23135 9.1119E-05 -0.6425 -0.00025306 -0.41115 -0.00016194 393.86683436140186 73.156 0.35487 69.497 69.313 69.667 -3.6595 -0.017487 -0.0007726 NaN 4.1895 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1062400 30431 4335 20323 20333 -0.0027304374032155465 MLYWWHQS 8 Unmodified _MLYWWHQS_ 0 0 0 ENST00000512760.5_1_4:79841695-79860421:-|nuORF;ENST00000342820.10_1_4:79841695-79843397:-|nuORF;ENSG00000163291|ENST00000512733|PAQR3 ENST00000512760.5_1_4:79841695-79860421:-|nuORF ENST00000512760.5_1_4:79841695-79860421:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3370971679688 2 575.760569 1149.50659 0.069237 3.9864E-05 -0.029201 -1.6813E-05 0.040036 2.3051E-05 576.2617055806277 145.1 0.17833 140.43 140.3 140.48 -4.6694 5 4 2 0 0 0 1.0147 1 28734 28734 2.3027 0 1 1980900 30432 10759 20324 20334 29984 29984 -0.06218752743097866 MMCMNCGC 8 Unmodified _MMCMNCGC_ 0 0 0 ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5 ENSG00000154783|ENST00000285046|FGD5 ENSG00000154783|ENST00000285046|FGD5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 893.2308349609375 1 892.23124 891.223963 -1.4569 -0.0012999 0.89544 0.00079894 -0.56151 -0.00050099 892.2333345692666 5.6499 1.0375 4.6411 4.3035 5.341 -1.0089 42 28 2 0 0 0 0.89856 1 266 266 0 0 1 310820 30433 5025 20325 20335 29985 29985 -0.22599991393008168 MMCMNCGC 8 Unmodified _MMCMNCGC_ 0 0 0 ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5 ENSG00000154783|ENST00000285046|FGD5 ENSG00000154783|ENST00000285046|FGD5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 893.2314453125 1 892.23124 891.223963 -1.4568 -0.0012998 1.0571 0.00094316 -0.39976 -0.00035668 892.2333609365388 11.071 0.70395 10.004 9.3537 10.058 -1.0664 27 19 2 0 0 0 8448 1 1174 1174 0 0 1 270680 30434 5025 20325 20335 29986 29986 -0.22599991393008168 MMCMNCGC 8 Unmodified _MMCMNCGC_ 0 0 0 ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5 ENSG00000154783|ENST00000285046|FGD5 ENSG00000154783|ENST00000285046|FGD5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 892.7222900390625 1 892.23124 891.223963 -1.4571 -0.0013 0.27159 0.00024232 -1.1855 -0.0010577 892.233201969456 8.6346 0.49793 7.5999 7.3498 7.8477 -1.0347 20 13 2 0 0 0 0.9003 1 827 827 0 0 1 170700 30435 5025 20325 20335 29987 29987 -0.22599991393008168 MMCMNCGC 8 Unmodified _MMCMNCGC_ 0 0 0 ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5 ENSG00000154783|ENST00000285046|FGD5 ENSG00000154783|ENST00000285046|FGD5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 892.23124 891.223963 -0.40425 -0.00036068 1.3209 0.0011786 0.91668 0.00081789 892.2330400886616 5.2522 0.32312 4.6259 4.3675 4.6906 -0.62626 0.04213 0.00058832 NaN 0 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 105410 30436 5025 20325 20335 -0.22599991393008168 MMCMNCGC 8 Unmodified _MMCMNCGC_ 0 0 0 ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5 ENSG00000154783|ENST00000285046|FGD5 ENSG00000154783|ENST00000285046|FGD5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 892.23124 891.223963 -0.43921 -0.00039188 0.26772 0.00023887 -0.17149 -0.00015301 892.2323814133734 5.5244 1.0204 4.4844 3.8972 4.9177 -1.04 -0.099374 -0.00035139 NaN 0 42 28 2 NaN NaN NaN NaN 0 NaN NaN 0 192640 30437 5025 20325 20335 -0.22599991393008168 MMDPNSTQRY 10 Oxidation (M) _M(Oxidation (M))MDPNSTQRY_ M(0.5)M(0.5)DPNSTQRY M(0)M(0)DPNSTQRY 0 0 1 ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7651977539062 2 629.76318 1257.51181 0.46572 0.0002933 -0.242 -0.0001524 0.22372 0.00014089 629.7633277175513 26.086 1.3753 26.086 25.669 27.044 0 115 39 5 0 0 0 0.0017503 3 4555 4504;4555;4603 114.19 99.348 2 64514000 30438 3322 20326 20336 29988;29989;29990 29989 52;53 -0.10664861733448561 MMDPNSTQRY 10 Oxidation (M) _M(Oxidation (M))MDPNSTQRY_ M(0.5)M(0.5)DPNSTQRY M(0)M(0)DPNSTQRY 0 0 1 ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7650146484375 2 629.76318 1257.51181 0.44525 0.0002804 -0.78177 -0.00049233 -0.33651 -0.00021192 629.7629476027182 28.674 1.7043 28.674 28.077 29.782 0 101 48 5 0 0 0 6.7498E-13 3 5097 5097;5101;5149 148.27 127.85 2 93989000 30439 3322 20326 20336 29991;29992;29993 29991 52;53 -0.10664861733448561 MMDPNSTQRY 10 Oxidation (M) _M(Oxidation (M))MDPNSTQRY_ M(0.907)M(0.093)DPNSTQRY M(9.9)M(-9.9)DPNSTQRY 0 0 1 ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7652587890625 2 629.76318 1257.51181 0.48625 0.00030622 -0.23252 -0.00014644 0.25373 0.00015979 629.7633230629017 27.986 2.6892 26.231 25.83 28.519 -1.7552 160 76 5 0 0 0 5.4347E-08 4 4700 4657;4700;4703;4756 125.04 108.89 2 56770000 30440 3322 20326 20336 29994;29995;29996;29997 29995 52;53 -0.10664861733448561 MMDPNSTQRY 10 Oxidation (M) _M(Oxidation (M))MDPNSTQRY_ M(0.5)M(0.5)DPNSTQRY M(0)M(0)DPNSTQRY 0 0 1 ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7649536132812 2 629.76318 1257.51181 0.54269 0.00034177 -0.78887 -0.0004968 -0.24618 -0.00015503 629.7630208435658 30.856 4.1964 28.829 28.248 32.444 -2.0264 190 119 6 0 0 0 1.9136E-05 2 5307 5307;5352 139.78 122.67 2 83722000 30441 3322 20326 20336 29998;29999 29998 52;53 -0.10664861733448561 MMDPNSTQRY 10 Oxidation (M) _M(Oxidation (M))MDPNSTQRY_ M(0.5)M(0.5)DPNSTQRY M(0)M(0)DPNSTQRY 0 0 1 ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7656860351562 2 629.76318 1257.51181 0.52777 0.00033237 -0.17848 -0.0001124 0.34928 0.00021997 629.7633989050145 28.183 2.8268 26.187 25.787 28.613 -1.9962 181 80 5 0 0 0 6.7498E-13 4 4746 4698;4746;4749;4803 114.19 101.14 2 56890000 30442 3322 20326 20336 30000;30001;30002;30003 30001 52;53 -0.10664861733448561 MMDPNSTQRY 10 Oxidation (M) _M(Oxidation (M))MDPNSTQRY_ M(0.5)M(0.5)DPNSTQRY M(0)M(0)DPNSTQRY 0 0 1 ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.764892578125 2 629.76318 1257.51181 0.7467 0.00047024 -1.0697 -0.00067369 -0.32304 -0.00020344 629.7628709671059 30.996 4.631 28.922 28.535 33.166 -2.0743 230 132 6 0 0 0 6.7498E-13 4 5329 5283;5329;5332;5383 114.19 104.04 2 82997000 30443 3322 20326 20336 30004;30005;30006;30007 30005 52;53 -0.10664861733448561 MMDPNSTQRY 10 Unmodified _MMDPNSTQRY_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7672119140625 2 621.765723 1241.51689 0.60897 0.00037864 -1.1766 -0.00073157 -0.56762 -0.00035293 621.7653930217266 42.047 1.4363 42.047 41.618 43.054 0 145 40 6 0 0 0 0.00016105 4 7854 7804;7852;7854;7904 125.53 102.76 1 295420000 30444 3322 20326 20337 30008;30009;30010;30011 30010 -0.09420557870816992 MMDPNSTQRY 10 Unmodified _MMDPNSTQRY_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7670288085938 2 621.765723 1241.51689 0.96709 0.0006013 -1.4072 -0.00087497 -0.44015 -0.00027367 621.7653778738974 45.262 1.5482 42.472 42.024 43.572 -2.79 136 43 6 0 0 0 1.256E-05 5 8508 8468;8506;8508;8553;8601 140.63 104.13 1 399910000 30445 3322 20326 20337 30012;30013;30014;30015;30016 30014 -0.09420557870816992 MMDPNSTQRY 10 Unmodified _MMDPNSTQRY_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7669677734375 2 621.765723 1241.51689 0.21732 0.00013512 -0.68967 -0.00042881 -0.47235 -0.00029369 621.7658414413057 45.307 1.2888 42.441 41.986 43.275 -2.8653 134 36 6 0 0 0 0.00021243 5 8207 8161;8207;8246;8249;8299 121.53 111.08 1 338230000 30446 3322 20326 20337 30017;30018;30019;30020;30021 30018 -0.09420557870816992 MMDPNSTQRY 10 Unmodified _MMDPNSTQRY_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7673950195312 2 621.765723 1241.51689 0.087064 5.4134E-05 -0.52159 -0.0003243 -0.43452 -0.00027017 621.7659008939813 45.247 1.3903 42.38 41.981 43.371 -2.8666 140 39 6 0 0 0 7.1121E-05 5 8246 8131;8137;8156;8246;8295 133.05 96.546 1 268640000 30447 3322 20326 20337 30022;30023;30024;30025;30026 30025 -0.09420557870816992 MMKDCSAGK 9 Unmodified _MMKDCSAGK_ 0 0 0 nc|ENSG00000005469|Q9UKG9-3|CROT;ENSG00000005469|ENST00000331536|CROT nc|ENSG00000005469|Q9UKG9-3|CROT nc|ENSG00000005469|Q9UKG9-3|CROT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1441345214844 3 324.143341 969.408193 NaN NaN NaN NaN NaN NaN NaN 64.212 1 60.956 60.456 61.456 -3.2567 0 0 0 0.23508 1 12054 12054 2.2828 0.80087 1 30448 992 20327 20338 30027 30027 -0.07773440374785423 MMKGAPER 8 Unmodified _MMKGAPER_ 0 0 0 ENSG00000132681|ENST00000368081|ATP1A4;ATP1A4|p.E557Nfs*4|1|0.1|ENSG00000132681|chr1:160171424-160171424|G/-|frameshift_variant;ATP1A4|p.P701Lfs*20|1|0.3|ENSG00000132681|chr1:160174218-160174218|C/-|frameshift_variant ENSG00000132681|ENST00000368081|ATP1A4 ENSG00000132681|ENST00000368081|ATP1A4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.1897277832031 3 307.154457 918.441542 NaN NaN NaN NaN NaN NaN NaN 73.779 1 70.415 69.915 70.915 -3.3643 0 0 0 0.21486 1 14384 14384 0.45834 0 1 30449 3753 20328 20339 30028 30028 -0.02094070540579196 MMMLDWFRRKR 11 Unmodified _MMMLDWFRRKR_ 0 0 0 REV__ENST00000361690.7_1_6:35856682-35888302:-|nuORF REV__ENST00000361690.7_1_6:35856682-35888302:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4035034179688 2 785.401801 1568.78905 NaN NaN NaN NaN NaN NaN NaN 12.026 1 11.016 10.516 11.516 -1.0098 0 0 0 0.22632 1 1639 1639 0.026206 0 1 + 30450 20888 20329 20340 30029 30029 0.027405526695019944 MMPGVAGG 8 Unmodified _MMPGVAGG_ 0 0 0 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2019348144531 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 127.89 1 127.89 127.39 128.39 0 0 0 0 0.21486 1 25251 25251 2.8892 0 1 30451 3227 20330 20341 30030 30030 -0.05620791414764881 MMPGVAGG 8 Unmodified _MMPGVAGG_ 0 0 0 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013854980469 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 126.14 1 121.54 121.04 122.04 -4.5984 0 0 0 0.21486 1 24868 24868 2.8892 0 1 30452 3227 20330 20341 30031 30031 -0.05620791414764881 MMPGVAGG 8 Unmodified _MMPGVAGG_ 0 0 0 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 126.96 1 122.34 121.84 122.84 -4.6172 0 0 0 0.21486 1 25034 25034 2.8892 0 1 30453 3227 20330 20341 30032 30032 -0.05620791414764881 MMPGVAGG 8 Unmodified _MMPGVAGG_ 0 0 0 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015686035156 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 132.5 1 127.64 127.14 128.14 -4.8527 0 0 0 0.21486 1 25450 25450 2.8892 0 1 30454 3227 20330 20341 30033 30033 -0.05620791414764881 MMPGVAGG 8 Unmodified _MMPGVAGG_ 0 0 0 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 130.41 1 125.64 125.14 126.14 -4.7725 0 0 0 0.21486 1 25098 25098 2.8892 0 1 30455 3227 20330 20341 30034 30034 -0.05620791414764881 MMPGVAGG 8 Unmodified _MMPGVAGG_ 0 0 0 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018737792969 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 130.64 1 125.86 125.36 126.36 -4.7725 0 0 0 0.21486 1 25146 25146 2.8892 0 1 30456 3227 20330 20341 30035 30035 -0.05620791414764881 MMPGVAGG 8 Unmodified _MMPGVAGG_ 0 0 0 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2012023925781 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 134.02 1 129.2 128.7 129.7 -4.8175 0 0 0 0.21486 1 25801 25801 2.8892 0 1 30457 3227 20330 20341 30036 30036 -0.05620791414764881 MMPGVAGG 8 Unmodified _MMPGVAGG_ 0 0 0 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015686035156 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 135.28 1 130.45 129.95 130.95 -4.8307 0 0 0 0.21486 1 26044 26044 2.8892 0 1 30458 3227 20330 20341 30037 30037 -0.05620791414764881 MMPGVAGG 8 Unmodified _MMPGVAGG_ 0 0 0 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2019348144531 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 135.72 1 130.89 130.39 131.39 -4.8307 0 0 0 0.21486 1 26132 26132 2.8892 0 1 30459 3227 20330 20341 30038 30038 -0.05620791414764881 MMPGVAGG 8 Unmodified _MMPGVAGG_ 0 0 0 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2020263671875 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 136.36 1 131.53 131.03 132.03 -4.8307 0 0 0 0.21486 1 26257 26257 2.8892 0 1 30460 3227 20330 20341 30039 30039 -0.05620791414764881 MMPGVAGG 8 Unmodified _MMPGVAGG_ 0 0 0 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018737792969 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 137.15 1 132.31 131.81 132.81 -4.84 0 0 0 0.21486 1 26421 26421 2.8892 0 1 30461 3227 20330 20341 30040 30040 -0.05620791414764881 MMPGVAGG 8 Unmodified _MMPGVAGG_ 0 0 0 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant ZMIZ2|p.G113Afs*67|1|0.57|ENSG00000122515|chr7:44757115-44757115|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 138.15 1 133.31 132.81 133.81 -4.84 0 0 0 0.21486 1 26621 26621 2.8892 0 1 30462 3227 20330 20341 30041 30041 -0.05620791414764881 MMPHAIVILI 10 Unmodified _MMPHAIVILI_ 0 0 0 tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1 tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1 tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 569.3292846679688 2 569.329773 1136.64499 NaN NaN NaN NaN NaN NaN NaN 27.125 1 25.49 24.99 25.99 -1.6347 0 0 0 2.8426 1 4525 4525 0.013265 0 1 30463 26400 20331 20342 30042 30042 0.08213654181031416 MMPSPGRFR 9 Unmodified _MMPSPGRFR_ 0 0 0 ENST00000488423.1_1_3:16306445-16306478:-|nuORF ENST00000488423.1_1_3:16306445-16306478:-|nuORF ENST00000488423.1_1_3:16306445-16306478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2014465332031 3 360.181006 1077.52119 NaN NaN NaN NaN NaN NaN NaN 90.077 1 86.033 85.533 86.533 -4.0443 0 0 0 0.23508 1 17159 17159 2.9952 0.49676 1 30464 10484 20332 20343 30043 30043 -0.014470038665876928 MMQPLEQPL 9 Unmodified _MMQPLEQPL_ 0 0 0 REV__ENOX1|p.P124Lfs*79|1|0.27|ENSG00000120658|chr13:43361292-43361292|A/-|frameshift_variant REV__ENOX1|p.P124Lfs*79|1|0.27|ENSG00000120658|chr13:43361292-43361292|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.769775390625 2 543.769745 1085.52494 NaN NaN NaN NaN NaN NaN NaN 25.823 1 24.188 23.688 24.688 -1.6347 0 0 0 0.22621 1 4261 4261 15.847 0 1 + 30465 13815 20333 20344 30044 30044 -0.014403788833988074 MMSCGHIRF 9 Unmodified _MMSCGHIRF_ 0 0 0 REV__ENST00000537663.5_1_6:13978415-13978538:+|nuORF REV__ENST00000537663.5_1_6:13978415-13978538:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2694091796875 2 541.240632 1080.46671 NaN NaN NaN NaN NaN NaN NaN 148.97 1 143.82 143.32 144.32 -5.1557 0 0 0 0.22193 1 28850 28850 17.113 4.5813 1 + 30466 22828 20334 20345 30045 30045 -0.07030339009656927 MMSEDRISL 9 Unmodified _MMSEDRISL_ 0 0 0 ENSG00000131459|ENST00000253778|GFPT2 ENSG00000131459|ENST00000253778|GFPT2 ENSG00000131459|ENST00000253778|GFPT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2824096679688 2 541.254459 1080.49437 0.51609 0.00027934 -0.18737 -0.00010141 0.32872 0.00017792 541.2546096009694 101.61 0.52079 97.593 97.279 97.8 -4.0212 19 14 2 0 0 0 0.58077 1 19523 19523 14.405 2.1647 1 729820 30467 3677 20335 20346 30046 30046 -0.042661572684210114 MMSEDRISL 9 Unmodified _MMSEDRISL_ 0 0 0 ENSG00000131459|ENST00000253778|GFPT2 ENSG00000131459|ENST00000253778|GFPT2 ENSG00000131459|ENST00000253778|GFPT2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.254459 1080.49437 0.22593 0.00012228 -0.1421 -7.6915E-05 0.083822 4.5369E-05 541.2544344930676 101.65 0.37564 97.49 97.331 97.706 -4.1594 -0.028776 2.1056E-06 NaN 14.405 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1466200 30468 3677 20335 20346 -0.042661572684210114 MMSEDRISL 9 Unmodified _MMSEDRISL_ 0 0 0 ENSG00000131459|ENST00000253778|GFPT2 ENSG00000131459|ENST00000253778|GFPT2 ENSG00000131459|ENST00000253778|GFPT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 541.254459 1080.49437 0.39174 0.00021203 -0.079231 -4.2884E-05 0.31251 0.00016915 541.2542419946823 101.79 0.37961 97.474 97.261 97.64 -4.3208 -0.045164 7.0166E-05 NaN 14.405 18 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1594500 30469 3677 20335 20346 -0.042661572684210114 MMSMLTYS 8 Unmodified _MMSMLTYS_ 0 0 0 REV__ENST00000332211.10_2_10:76980682-76982077:+|nuORF REV__ENST00000332211.10_2_10:76980682-76982077:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.772705078125 2 482.20285 962.391146 -0.048237 -2.326E-05 -0.17687 -8.5286E-05 -0.2251 -0.00010855 482.20270888812684 86.775 0.76173 86.775 86.458 87.22 0 38 21 2 0 0 0 8448 1 16962 16962 0.68139 0.55358 1 2294200 + 30470 20623 20336 20347 30047 30047 -0.09155360980594196 MMTLKKTLI 9 Unmodified _MMTLKKTLI_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21630859375 3 360.216946 1077.62901 NaN NaN NaN NaN NaN NaN NaN 176.77 1 171.87 171.37 172.37 -4.9008 0 0 0 0.23508 1 35248 35248 0.26902 0 1 30471 4765 20337 20348 30048 30048 0.09329947944138439 MMTTLWSVL 9 Unmodified _MMTTLWSVL_ 0 0 0 REV__nc|ENSG00000204463|P46379-5|BAG6 REV__nc|ENSG00000204463|P46379-5|BAG6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2742919921875 2 541.274664 1080.53477 NaN NaN NaN NaN NaN NaN NaN 145.71 1 140.71 140.21 141.21 -5 0 0 0 0.23508 1 28183 28183 7.2892 0.56607 1 + 30472 19538 20338 20349 30049 30049 -0.002271908780130616 MMVRQCLRS 9 Unmodified _MMVRQCLRS_ 0 0 0 REV__ENSG00000089063|ENST00000342308|TMEM230 REV__ENSG00000089063|ENST00000342308|TMEM230 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2192077636719 3 375.189285 1122.54602 0.089655 3.3638E-05 -0.34901 -0.00013094 -0.25935 -9.7307E-05 375.1890626185454 31.691 3.6953 29.46 26.775 30.47 -2.2305 221 104 4 0 0 0 0.21942 1 5869 5869 1.2148 0.94944 1 5639900 + 30473 14519 20339 20350 30050 30050 -0.010346920555093675 MMWDVLETG 9 Unmodified _MMWDVLETG_ 0 0 0 REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2582397460938 2 541.238278 1080.462 0.30318 0.00016409 -2.9686 -0.0016067 -2.6655 -0.0014426 541.2371904994484 141.35 0.95633 141.35 140.75 141.71 0 38 27 2 0 0 0 0.69259 1 28209 28209 6.7232 0.51738 1 20280000 + 30474 14570 20340 20351 30051 30051 -0.07500944671437537 MNAKRCPH 8 Unmodified _MNAKRCPH_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7316589355469 2 478.731289 955.448025 NaN NaN NaN NaN NaN NaN NaN 8.9903 1 8.9903 8.4903 9.4903 0 0 0 0 0.21486 1 995 995 0.69038 0 1 30475 1406 20341 20352 30052 30052 -0.03148132589205943 MNCMNKNHGC 10 Unmodified _MNCMNKNHGC_ 0 0 0 ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3 ENSG00000146197|ENST00000274938|SCUBE3 ENSG00000146197|ENST00000274938|SCUBE3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.31982421875 2 576.214288 1150.41402 0.04472 2.5768E-05 0.78558 0.00045266 0.8303 0.00047843 576.2148405643031 79.979 0.56594 76.469 76.189 76.755 -3.5102 30 15 3 0 0 0 1.127 1 15618 15618 0.84494 0 1 2579800 30476 4643 20342 20353 30053 30053 -0.1551666513478267 MNCYSCGWVV 10 Unmodified _MNCYSCGWVV_ 0 0 0 ENST00000330574.2_1_11:62416983-62417043:-|nuORF ENST00000330574.2_1_11:62416983-62417043:-|nuORF ENST00000330574.2_1_11:62416983-62417043:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7170104980469 3 387.822379 1160.44531 0.18116 7.0256E-05 -1.3361 -0.00051817 -1.155 -0.00044792 388.1558743974373 64.05 0.31879 60.635 60.457 60.775 -3.4158 16 8 3 0 0 0 0.53283 1 11970 11970 0.69767 0 1 545060 30477 8768 20343 20354 30054 30054 -0.12849768829050845 MNDMSWVRL 9 Unmodified _MNDMSWVRL_ 0 0 0 REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7 REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3197021484375 2 576.270444 1150.52633 NaN NaN NaN NaN NaN NaN NaN 129.2 1 129.2 128.7 129.7 0 0 0 0 0.21065 1 25520 25520 20.454 3.5113 1 + 30478 16085 20344 20355 30055 30055 -0.0429074479461633 MNDMSWVRL 9 Unmodified _MNDMSWVRL_ 0 0 0 REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7 REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3370361328125 2 576.270444 1150.52633 NaN NaN NaN NaN NaN NaN NaN 129.24 1 129.24 128.74 129.74 0 0 0 0 0.21065 1 25531 25531 20.454 3.5113 1 + 30479 16085 20344 20355 30056 30056 -0.0429074479461633 MNEPAMSIS 9 Unmodified _MNEPAMSIS_ 0 0 0 REV__nc|ENSG00000075292|Q14966-3|ZNF638 REV__nc|ENSG00000075292|Q14966-3|ZNF638 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.267822265625 2 490.214803 978.415053 NaN NaN NaN NaN NaN NaN NaN 115.99 1 115.99 115.49 116.49 0 0 0 0 0.23508 1 22835 22835 11.64 0.52583 1 + 30480 14328 20345 20356 30057 30057 -0.07501804222567898 MNFNLSKVE 9 Unmodified _MNFNLSKVE_ 0 0 0 REV__ENSG00000023734|ENST00000419869|STRAP REV__ENSG00000023734|ENST00000419869|STRAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.269287109375 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 94.659 1 90.633 90.133 91.133 -4.0256 0 0 0 0.18489 1 18550 18550 17.113 7.039 1 + 30481 13994 20346 20357 30058 30058 -0.009662071540560646 MNIVVNQTY 9 Unmodified _MNIVVNQTY_ 0 0 0 REV__GTF2E1|p.D260G|1|0.32|ENSG00000153767|chr3:120776551-120776551|A/G|missense_variant REV__GTF2E1|p.D260G|1|0.32|ENSG00000153767|chr3:120776551-120776551|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2693481445312 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 101.24 1 96.945 96.445 97.445 -4.297 0 0 0 0.18272 1 19371 19371 2.6312 1.4164 1 + 30482 17154 20347 20358 30059 30059 -0.009662071540560646 MNLCILIMIS 10 Unmodified _MNLCILIMIS_ 0 0 0 REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant;REV__nc|ENSG00000144285|P35498-3|SCN1A REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3365478515625 2 575.805274 1149.59599 1.2135E-05 6.9874E-09 -1.1401 -0.00065649 -1.1401 -0.00065649 575.8049786911029 134.89 0.63641 130.25 129.84 130.48 -4.6399 38 17 3 0 0 0 0.87854 1 26539 26539 9.3831 1.473 1 4251800 + 30483 24595;16775 20348 20359 30060 30060 0.027179978297681373 MNLCILIMIS 10 Unmodified _MNLCILIMIS_ 0 0 0 REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant;REV__nc|ENSG00000144285|P35498-3|SCN1A REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3172607421875 2 575.805274 1149.59599 0.22545 0.00012982 -0.64902 -0.00037371 -0.42357 -0.00024389 575.8049164790534 135.11 0.42175 130.28 130 130.42 -4.8307 18 11 2 0 0 0 0.61964 1 25965 25965 18.146 9.4009 1 2520000 + 30484 24595;16775 20348 20359 30061 30061 0.027179978297681373 MNLPHRVTR 9 Unmodified _MNLPHRVTR_ 0 0 0 ENSG00000197446|ENST00000331105|CYP2F1 ENSG00000197446|ENST00000331105|CYP2F1 ENSG00000197446|ENST00000331105|CYP2F1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.20880126953125 3 375.209953 1122.60803 NaN NaN NaN NaN NaN NaN NaN 86.975 1 83.248 82.748 83.748 -3.727 0 0 0 0.19677 1 17004 17004 0.40827 0 1 30485 7367 20349 20360 30062 30062 0.05163118679456602 MNNAIKKLF 9 Unmodified _MNNAIKKLF_ 0 0 0 ENSG00000203757|ENST00000368145|OR6K3;nc|ENSG00000203757|Q8NGY3|OR6K3 ENSG00000203757|ENST00000368145|OR6K3 ENSG00000203757|ENST00000368145|OR6K3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2067565917969 3 360.207438 1077.60049 NaN NaN NaN NaN NaN NaN NaN 165.84 1 160.85 160.35 161.35 -4.9811 0 0 0 0.23508 1 32451 32451 4.897 0.56777 1 30486 7546 20350 20361 30063 30063 0.06478966359190963 MNRLAPVE 8 Unmodified _MNRLAPVE_ 0 0 0 ENST00000590314.1_1_17:40685554-40685683:+|nuORF ENST00000590314.1_1_17:40685554-40685683:+|nuORF ENST00000590314.1_1_17:40685554-40685683:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24615478515625 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 116.51 1 116.51 116.01 117.01 0 0 0 0 0.18417 1 22940 22940 30.225 6.2042 1 30487 11599 20351 20362 30064 30064 0.012935583655917071 MNVGHEEE 8 Unmodified _MNVGHEEE_ 0 0 0 nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1;nc|ENSG00000116141|Q9P0L2-2|MARK1 nc|ENSG00000116141|Q9P0L2-3|MARK1 nc|ENSG00000116141|Q9P0L2-3|MARK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 474.20477294921875 2 472.692549 943.370546 -0.087516 -4.1368E-05 0.67866 0.0003208 0.59114 0.00027943 472.6933266045158 141.89 0.83426 141.89 141.54 142.37 0 84 23 5 0 0 0 8448 1 28261 28261 3.2813 3.2813 1 21551000 30488 2910 20352 20363 30065 30065 -0.10340492044406346 MPDLCDEEE 9 Unmodified _MPDLCDEEE_ 0 0 0 REV__ENSG00000009694|ENST00000371130|TENM1 REV__ENSG00000009694|ENST00000371130|TENM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26611328125 2 540.69664 1079.37873 0.13845 7.4861E-05 0.80425 0.00043485 0.9427 0.00050971 540.6970123592234 102.78 0.53036 98.596 98.411 98.941 -4.1861 18 14 2 0 0 0 0.60489 1 20254 20254 2.4985 0 1 948390 + 30489 13910 20353 20364 30066 30066 -0.15778725909945024 MPDPVTEPPV 10 Unmodified _MPDPVTEPPV_ 0 0 0 nc|ENSG00000155893|Q8TE99-2|PXYLP1;ENSG00000155893|ENST00000286353|PXYLP1 nc|ENSG00000155893|Q8TE99-2|PXYLP1 nc|ENSG00000155893|Q8TE99-2|PXYLP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2648315429688 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 127.41 1 122.79 122.29 123.29 -4.6172 0 0 0 0.22583 1 25125 25125 13.906 0.29118 1 30490 5068 20354 20365 30067 30067 -0.02089029248213592 MPDWQYPP 8 Unmodified _MPDWQYPP_ 0 0 0 REV__ENSG00000130338|ENST00000367097|TULP4 REV__ENSG00000130338|ENST00000367097|TULP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.1291809082031 3 345.153111 1032.4375 NaN NaN NaN NaN NaN NaN NaN 115.57 1 115.57 115.07 116.07 0 0 0 0 0.21486 1 22746 22746 1.8442 0.38912 1 + 30491 15998 20355 20366 30068 30068 -0.07741836762670573 MPEEASQH 8 Unmodified _MPEEASQH_ 0 0 0 tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1 tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1 tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647644042969 3 310.132487 927.375631 NaN NaN NaN NaN NaN NaN NaN 24.284 1 24.284 23.784 24.784 0 0 0 0 0.22636 1 4178 4178 3.5871 0.94402 1 30492 26137 20356 20367 30069 30069 -0.09096188181786147 MPIHHDMVEWF 11 Unmodified _MPIHHDMVEWF_ 0 0 0 REV__ENST00000470811.5_1_3:156544101-156697065:+|nuORF REV__ENST00000470811.5_1_3:156544101-156697065:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2404479980469 3 481.217897 1440.63186 NaN NaN NaN NaN NaN NaN NaN 117.05 1 112.47 111.97 112.97 -4.5815 0 0 0 0.22632 1 22459 22459 0.172 0.12821 1 + 30493 22034 20357 20368 30070 30070 -0.07082828669035734 MPKDELPNH 9 Unmodified _MPKDELPNH_ 0 0 0 nc|ENSG00000181852|Q9H4P4-2|RNF41;RNF41|p.C291Lfs*2|1|0.06|ENSG00000181852|chr12:56206531-56206532|-/A|frameshift_variant;ENSG00000181852|ENST00000345093|RNF41 nc|ENSG00000181852|Q9H4P4-2|RNF41 nc|ENSG00000181852|Q9H4P4-2|RNF41 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2611694335938 2 540.760766 1079.50698 0.12467 6.7419E-05 2.575 0.0013925 2.6997 0.0014599 540.7639987867514 88.113 1.0098 84.321 83.577 84.587 -3.7926 49 27 3 0 0 0 0.5059 1 17266 17266 19.257 1.122 1 3934600 30494 6751 20358 20369 30071 30071 -0.029593778138860216 MPLKRSDLY 9 Unmodified _MPLKRSDLY_ 0 0 0 REV__ENSG00000008282|ENST00000455385|SYPL1 REV__ENSG00000008282|ENST00000455385|SYPL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.20526123046875 3 374.870715 1121.59032 -0.2424 -9.0869E-05 0.14577 5.4643E-05 -0.096635 -3.6226E-05 374.8707708564455 82.809 0.7361 79.201 78.812 79.548 -3.6079 45 20 3 0 0 0 0.5685 2 16206 16154;16206 15.248 0.54658 1 3416900 + 30495 13899 20359 20370 30072;30073 30073 0.0343835863395725 MPLLKLSC 8 Unmodified _MPLLKLSC_ 0 0 0 OR1A2|p.L249Yfs*14|1|0.32|ENSG00000172150|chr17:3198258-3198258|T/-|frameshift_variant;OR1A2|p.L249Ffs*41|1|0.23|ENSG00000172150|chr17:3198257-3198258|-/T|frameshift_variant;ENSG00000172150|ENST00000381951|OR1A2 OR1A2|p.L249Yfs*14|1|0.32|ENSG00000172150|chr17:3198258-3198258|T/-|frameshift_variant OR1A2|p.L249Yfs*14|1|0.32|ENSG00000172150|chr17:3198258-3198258|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 452.3145751953125 2 452.753367 903.492181 0.094594 4.2828E-05 -1.0291 -0.00046593 -0.9345 -0.0004231 452.7528473106393 90.228 0.52325 90.228 89.913 90.437 0 19 14 2 0 0 0 0.88497 1 17565 17565 10.074 0.83015 1 1518600 30496 6195 20360 20371 30074 30074 0.03657458784425671 MPLLKLSC 8 Unmodified _MPLLKLSC_ 0 0 0 OR1A2|p.L249Yfs*14|1|0.32|ENSG00000172150|chr17:3198258-3198258|T/-|frameshift_variant;OR1A2|p.L249Ffs*41|1|0.23|ENSG00000172150|chr17:3198257-3198258|-/T|frameshift_variant;ENSG00000172150|ENST00000381951|OR1A2 OR1A2|p.L249Yfs*14|1|0.32|ENSG00000172150|chr17:3198258-3198258|T/-|frameshift_variant OR1A2|p.L249Yfs*14|1|0.32|ENSG00000172150|chr17:3198258-3198258|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 452.753367 903.492181 -0.092529 -4.1893E-05 -0.27371 -0.00012392 -0.36624 -0.00016582 452.7531120670345 94.116 0.41695 90.126 89.897 90.314 -3.9907 -0.054965 0.00041239 NaN 10.074 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1518800 30497 6195 20360 20371 0.03657458784425671 MPLLKLSC 8 Unmodified _MPLLKLSC_ 0 0 0 OR1A2|p.L249Yfs*14|1|0.32|ENSG00000172150|chr17:3198258-3198258|T/-|frameshift_variant;OR1A2|p.L249Ffs*41|1|0.23|ENSG00000172150|chr17:3198257-3198258|-/T|frameshift_variant;ENSG00000172150|ENST00000381951|OR1A2 OR1A2|p.L249Yfs*14|1|0.32|ENSG00000172150|chr17:3198258-3198258|T/-|frameshift_variant OR1A2|p.L249Yfs*14|1|0.32|ENSG00000172150|chr17:3198258-3198258|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 452.753367 903.492181 0.13981 6.33E-05 -0.78257 -0.00035431 -0.64276 -0.00029101 452.7529277485784 94.379 0.4219 90.188 89.947 90.369 -4.1911 0.0070613 -4.8381E-05 NaN 10.074 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1197500 30498 6195 20360 20371 0.03657458784425671 MPLLLLLLLL 10 Unmodified _MPLLLLLLLL_ 0 0 0 GP1BA|p.S420Afs*52|1|0.4|ENSG00000185245|chr17:4933857-4933857|C/-|frameshift_variant;GP1BA|p.T494Pfs*59|1|0.4|ENSG00000185245|chr17:4934078-4934078|A/-|frameshift_variant;GP1BA|p.L531Wfs*22|1|0.36|ENSG00000185245|chr17:4934191-4934191|C/-|frameshift_variant;ENSG00000185245|ENST00000329125|GP1BA;GP1BA|p.F208Lfs*48|1|0.24|ENSG00000185245|chr17:4933223-4933223|T/-|frameshift_variant;SEMA6C|p.P861Lfs*37|2|0.24|ENSG00000143434|chr1:151132695-151132695|G/-|frameshift_variant;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C GP1BA|p.S420Afs*52|1|0.4|ENSG00000185245|chr17:4933857-4933857|C/-|frameshift_variant;SEMA6C|p.P861Lfs*37|2|0.24|ENSG00000143434|chr1:151132695-151132695|G/-|frameshift_variant GP1BA|p.S420Afs*52|1|0.4|ENSG00000185245|chr17:4933857-4933857|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3323974609375 2 576.395439 1150.77632 NaN NaN NaN NaN NaN NaN NaN 157.48 1 152.2 151.7 152.7 -5.2854 0 0 0 2.8426 1 30563 30563 0.0013812 0 1 30499 11857;4485 20361 20372 30075 30075 0.20696787820588725 MPMAFIKLK 9 Unmodified _MPMAFIKLK_ 0 0 0 REV__ENSG00000185686|ENST00000405655|PRAME REV__ENSG00000185686|ENST00000405655|PRAME MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21051025390625 3 360.209903 1077.60788 NaN NaN NaN NaN NaN NaN NaN 159.19 1 153.92 153.42 154.42 -5.2712 0 0 0 0.19624 1 30890 30890 0.0033805 0 1 + 30500 18982 20362 20373 30076 30076 0.07217982635256703 MPMCDNHD 8 Unmodified _MPMCDNHD_ 0 0 0 nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant nc|ENSG00000005810|O75592-2|MYCBP2 nc|ENSG00000005810|O75592-2|MYCBP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7838439941406 2 481.66188 961.309208 NaN NaN NaN NaN NaN NaN NaN 142.57 1 142.57 142.07 143.07 0 0 0 0 0.2396 1 28426 28426 0.063987 0.063987 1 30501 996 20363 20374 30077 30077 -0.1729946333970247 MPMRGRFIA 9 Unmodified _MPMRGRFIA_ 0 0 0 REV__ENSG00000173213|ENST00000308911|TUBB8B REV__ENSG00000173213|ENST00000308911|TUBB8B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2092590332031 3 360.193135 1077.55758 NaN NaN NaN NaN NaN NaN NaN 58.626 1 55.375 54.875 55.875 -3.2517 0 0 0 0.19624 1 10897 10897 0.0033805 0 1 + 30502 18338 20364 20375 30078 30078 0.021898730301472824 MPPIVEGTEL 10 Unmodified _MPPIVEGTEL_ 0 0 0 REV__nc|ENSG00000165264|O95139-2|NDUFB6 REV__nc|ENSG00000165264|O95139-2|NDUFB6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7821655273438 2 543.281 1084.54745 0.20556 0.00011168 -0.39395 -0.00021403 -0.18839 -0.00010235 543.2808204934466 98.326 1.013 94.057 93.498 94.511 -4.2692 40 28 2 0 0 0 0.35262 1 18855 18855 5.8681 0 1 1635000 + 30503 17750 20365 20376 30079 30079 0.00855543785860391 MPPMGSPVI 9 Unmodified _MPPMGSPVI_ 0 0 0 SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant;SEMA6A|p.R918Efs*23|1|0.25|ENSG00000092421|chr5:116446955-116446956|-/T|frameshift_variant;SEMA6A|p.N990Mfs*8|1|0.1|ENSG00000092421|chr5:116446737-116446738|-/GTACA|frameshift_variant;SEMA6A|p.K1013Nfs*11|1|0.19|ENSG00000092421|chr5:116446670-116446670|G/-|frameshift_variant;SEMA6A|p.K1013Qfs*15|1|0.45|ENSG00000092421|chr5:116446669-116446670|-/G|frameshift_variant;ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.240234375 2 464.735174 927.455795 -0.20056 -9.3206E-05 3.0871 0.0014347 2.8865 0.0013415 464.73492141854496 80.819 0.38733 77.131 76.827 77.214 -3.6879 16 10 2 0 0 0 0.52414 1 15412 15412 18.135 0 1 466540 30504 1834 20366 20377 30080 30080 -0.01083418112284562 MPPSMEDRA 9 Unmodified _MPPSMEDRA_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11 ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.1092529296875 3 345.152893 1032.43685 NaN NaN NaN NaN NaN NaN NaN 113.18 1 108.73 108.23 109.23 -4.4539 0 0 0 0.23508 1 22300 22300 2.7352 0.23671 1 30505 5813 20367 20378 30081 30081 -0.07806999473996257 MPPVPLVP 8 Unmodified _MPPVPLVP_ 0 0 0 REV__ESX1|p.P253S|1|0.16|ENSG00000123576|chrX:104250692-104250692|G/A|missense_variant REV__ESX1|p.P253S|1|0.16|ENSG00000123576|chrX:104250692-104250692|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2471618652344 2 425.248775 848.482997 NaN NaN NaN NaN NaN NaN NaN 11.997 1 11.997 11.497 12.497 0 0 0 0 0.2396 1 1638 1638 0.0082765 0 1 + 30506 15736 20368 20379 30082 30082 0.052694334903890194 MPPVPLVP 8 Unmodified _MPPVPLVP_ 0 0 0 REV__ESX1|p.P253S|1|0.16|ENSG00000123576|chrX:104250692-104250692|G/A|missense_variant REV__ESX1|p.P253S|1|0.16|ENSG00000123576|chrX:104250692-104250692|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24664306640625 2 425.248775 848.482997 NaN NaN NaN NaN NaN NaN NaN 13.164 1 11.991 11.491 12.491 -1.173 0 0 0 0.2396 1 1683 1683 0.0082765 0 1 + 30507 15736 20368 20379 30083 30083 0.052694334903890194 MPQGHAPPA 9 Unmodified _MPQGHAPPA_ 0 0 0 ENST00000445359.1_1_9:38643041-38643254:+|nuORF ENST00000445359.1_1_9:38643041-38643254:+|nuORF ENST00000445359.1_1_9:38643041-38643254:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 452.70037841796875 2 453.218537 904.422522 -0.0010129 -4.5908E-07 0.24463 0.00011087 0.24362 0.00011041 453.2186144525134 52.497 1.0163 49.409 48.916 49.932 -3.0876 47 28 2 0 0 0 0.17467 1 9616 9616 14.957 4.0582 1 1755600 30508 9930 20369 20380 30084 30084 -0.033512838399929024 MPQGHAPPA 9 Unmodified _MPQGHAPPA_ 0 0 0 ENST00000445359.1_1_9:38643041-38643254:+|nuORF ENST00000445359.1_1_9:38643041-38643254:+|nuORF ENST00000445359.1_1_9:38643041-38643254:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.218537 904.422522 -0.097078 -4.3998E-05 0.28722 0.00013017 0.19014 8.6176E-05 453.21859689446643 52.406 0.97256 49.311 48.893 49.865 -3.0954 -0.088225 -8.772E-05 NaN 14.957 46 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1291500 30509 9930 20369 20380 -0.033512838399929024 MPQLAAHIDK 10 Unmodified _MPQLAAHIDK_ 0 0 0 REV__ENSG00000248905|ENST00000616417|FMN1 REV__ENSG00000248905|ENST00000616417|FMN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2164306640625 3 375.202465 1122.58556 NaN NaN NaN NaN NaN NaN NaN 103.41 1 99.358 98.858 99.858 -4.0543 0 0 0 2.8426 1 19883 19883 0.063865 0.060484 1 + 30510 19818 20370 20381 30085 30085 0.02917474491187022 MPQRQHKRKYL 11 Unmodified _MPQRQHKRKYL_ 0 0 0 ENST00000307808.10_1_4:88052973-88053445:+|nuORF ENST00000307808.10_1_4:88052973-88053445:+|nuORF ENST00000307808.10_1_4:88052973-88053445:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 495.5919189453125 3 495.61375 1483.81942 NaN NaN NaN NaN NaN NaN NaN 14.879 1 13.706 13.206 14.206 -1.173 0 0 0 0.22632 1 2046 2046 0.50596 0.50596 1 30511 8618 20371 20382 30086 30086 0.09686370650570097 MPSQNSPQAQ 10 Unmodified _MPSQNSPQAQ_ 0 0 0 REV__nc|ENSG00000095787|Q9BTA9-5|WAC REV__nc|ENSG00000095787|Q9BTA9-5|WAC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7758178710938 2 544.24548 1086.47641 -0.28973 -0.00015768 0.61688 0.00033573 0.32715 0.00017805 544.2460779702475 19.507 0.20973 18.182 18.037 18.247 -1.3251 8 5 2 0 0 0 0.80147 1 2976 2976 26.268 15.444 1 503570 + 30512 14616 20372 20383 30087 30087 -0.06337156198924276 MPSQNSPQAQ 10 Unmodified _MPSQNSPQAQ_ 0 0 0 REV__nc|ENSG00000095787|Q9BTA9-5|WAC REV__nc|ENSG00000095787|Q9BTA9-5|WAC MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 544.24548 1086.47641 0.27834 0.00015148 0.80854 0.00044004 1.0869 0.00059153 544.245909521869 18.247 0.20842 18.247 18.057 18.266 0 0.037531 0.00041454 NaN 26.268 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1492800 + 30513 14616 20372 20383 -0.06337156198924276 MPSQNSPQAQ 10 Unmodified _MPSQNSPQAQ_ 0 0 0 REV__nc|ENSG00000095787|Q9BTA9-5|WAC REV__nc|ENSG00000095787|Q9BTA9-5|WAC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 544.24548 1086.47641 0.3643 0.00019827 0.18447 0.0001004 0.54878 0.00029867 544.2455671671223 19.597 0.27748 18.201 18.066 18.344 -1.3966 -0.0094157 -0.00026476 NaN 26.268 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 923850 + 30514 14616 20372 20383 -0.06337156198924276 MPTPKKRR 8 Unmodified _MPTPKKRR_ 0 0 0 ENST00000371146.5_1_1:62910492-62910543:+|nuORF ENST00000371146.5_1_1:62910492-62910543:+|nuORF ENST00000371146.5_1_1:62910492-62910543:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.8515625 3 338.539411 1012.5964 NaN NaN NaN NaN NaN NaN NaN 37.778 1 35.309 34.809 35.809 -2.4688 0 0 0 0.2386 1 6985 6985 0.12286 0 1 30515 9152 20373 20384 30088 30088 0.09060921656146093 MPTPKKRR 8 Unmodified _MPTPKKRR_ 0 0 0 ENST00000371146.5_1_1:62910492-62910543:+|nuORF ENST00000371146.5_1_1:62910492-62910543:+|nuORF ENST00000371146.5_1_1:62910492-62910543:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.838623046875 3 338.539411 1012.5964 NaN NaN NaN NaN NaN NaN NaN 37.812 1 35.343 34.843 35.843 -2.4688 0 0 0 0.2386 1 6993 6993 0.12286 0 1 30516 9152 20373 20384 30089 30089 0.09060921656146093 MPTVVTAKP 9 Unmodified _MPTVVTAKP_ 0 0 0 REV__ENST00000379277.6_1_20:5081360-5081546:-|nuORF REV__ENST00000379277.6_1_20:5081360-5081546:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.16998291015625 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 87.13 1 87.13 86.63 87.63 0 0 0 0 0.23508 1 17007 17007 1.0715 0 1 + 30517 21134 20374 20385 30090 30090 0.04727899685201464 MPVGMPRM 8 Unmodified _MPVGMPRM_ 0 0 0 CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant;nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23 CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.2477722167969 3 306.816788 917.428535 -0.93173 -0.00028587 -3.3286 -0.0010213 -4.2603 -0.0013071 306.81497008377926 8.4409 0.13453 7.7617 7.6435 7.778 -0.67913 5 3 2 0 0 0 1.0281 1 877 877 0.45834 0.45834 1 40130 30518 462 20375 20386 30091 30091 -0.03348224924320675 MPVPPPPPP 9 Unmodified _MPVPPPPPP_ 0 0 0 WIPF3|p.P325Rfs*49|1|0.42|ENSG00000122574|chr7:29884464-29884464|C/-|frameshift_variant;WIPF3|p.P298Lfs*76|1|0.4|ENSG00000122574|chr7:29884382-29884382|C/-|frameshift_variant;ENSG00000122574|ENST00000242140|WIPF3;WIPF3|p.D100Rfs*145|1|0.13|ENSG00000122574|chr7:29879077-29879078|-/T|frameshift_variant WIPF3|p.P325Rfs*49|1|0.42|ENSG00000122574|chr7:29884464-29884464|C/-|frameshift_variant WIPF3|p.P325Rfs*49|1|0.42|ENSG00000122574|chr7:29884464-29884464|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16961669921875 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 92.369 1 92.369 91.869 92.869 0 0 0 0 0.23508 1 18058 18058 1.1933 0.12188 1 30519 3234 20376 20387 30092 30092 0.022165320020576473 MPVPPPPPP 9 Unmodified _MPVPPPPPP_ 0 0 0 WIPF3|p.P325Rfs*49|1|0.42|ENSG00000122574|chr7:29884464-29884464|C/-|frameshift_variant;WIPF3|p.P298Lfs*76|1|0.4|ENSG00000122574|chr7:29884382-29884382|C/-|frameshift_variant;ENSG00000122574|ENST00000242140|WIPF3;WIPF3|p.D100Rfs*145|1|0.13|ENSG00000122574|chr7:29879077-29879078|-/T|frameshift_variant WIPF3|p.P325Rfs*49|1|0.42|ENSG00000122574|chr7:29884464-29884464|C/-|frameshift_variant WIPF3|p.P325Rfs*49|1|0.42|ENSG00000122574|chr7:29884464-29884464|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1708679199219 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 108.3 1 103.89 103.39 104.39 -4.4121 0 0 0 0.23508 1 20781 20781 1.1933 0 1 30520 3234 20376 20387 30093 30093 0.022165320020576473 MPYLEHESF 9 Unmodified _MPYLEHESF_ 0 0 0 CDC7|p.L184Yfs*6|1|0.24|ENSG00000097046|chr1:91511897-91511897|T/-|frameshift_variant;ENSG00000097046|ENST00000234626|CDC7 CDC7|p.L184Yfs*6|1|0.24|ENSG00000097046|chr1:91511897-91511897|T/-|frameshift_variant CDC7|p.L184Yfs*6|1|0.24|ENSG00000097046|chr1:91511897-91511897|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3194580078125 2 576.755149 1151.49575 0.29317 0.00016909 0.48256 0.00027832 0.77573 0.00044741 576.7551782263894 111.55 0.66117 111.55 111.21 111.87 0 31 18 2 0 0 0 0.0277 1 21917 21917 85.357 73.716 1 4568800 30521 457 20377 20388 30094 30094 -0.07394199908048904 MPYLEHESF 9 Unmodified _MPYLEHESF_ 0 0 0 CDC7|p.L184Yfs*6|1|0.24|ENSG00000097046|chr1:91511897-91511897|T/-|frameshift_variant;ENSG00000097046|ENST00000234626|CDC7 CDC7|p.L184Yfs*6|1|0.24|ENSG00000097046|chr1:91511897-91511897|T/-|frameshift_variant CDC7|p.L184Yfs*6|1|0.24|ENSG00000097046|chr1:91511897-91511897|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3341674804688 2 576.755149 1151.49575 0.50696 0.00029239 0.20871 0.00012037 0.71567 0.00041277 576.755398111042 116.1 0.81188 111.74 111.18 111.99 -4.3585 45 22 3 0 0 0 0.035225 1 22310 22310 78.149 60.003 1 4352500 30522 457 20377 20388 30095 30095 -0.07394199908048904 MPYLEHESF 9 Unmodified _MPYLEHESF_ 0 0 0 CDC7|p.L184Yfs*6|1|0.24|ENSG00000097046|chr1:91511897-91511897|T/-|frameshift_variant;ENSG00000097046|ENST00000234626|CDC7 CDC7|p.L184Yfs*6|1|0.24|ENSG00000097046|chr1:91511897-91511897|T/-|frameshift_variant CDC7|p.L184Yfs*6|1|0.24|ENSG00000097046|chr1:91511897-91511897|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.755149 1151.49575 0.40687 0.00023466 -0.097842 -5.6431E-05 0.30903 0.00017823 576.7553045723489 116.25 0.71587 111.67 111.26 111.97 -4.5815 0.022337 -0.00038157 NaN 85.357 47 20 4 NaN NaN NaN NaN 0 NaN NaN 0 3780800 30523 457 20377 20388 -0.07394199908048904 MQECTTQIQY 10 Unmodified _MQECTTQIQY_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP;ENST00000416077.1_1_6:51274881-51275238:-|nuORF ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7672119140625 2 622.767931 1243.52131 NaN NaN NaN NaN NaN NaN NaN 36.932 1 36.932 36.432 37.432 0 0 0 0 0.22588 1 6817 6817 12.241 0.60036 1 30524 4656 20378 20389 30096 30096 -0.09071093447892054 MQEEDEDSDY 10 Unmodified _MQEEDEDSDY_ 0 0 0 REV__CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant REV__CAND2|p.V955Wfs*12|1|0.3|ENSG00000144712|chr3:12817790-12817790|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7496948242188 2 630.714073 1259.41359 NaN NaN NaN NaN NaN NaN NaN 118.73 1 114.32 113.82 114.82 -4.4088 0 0 0 0.22588 1 22846 22846 1.8442 0.36234 1 + 30525 13253 20379 20390 30097 30097 -0.20573811568283418 MQGRPDGL 8 Unmodified _MQGRPDGL_ 0 0 0 ENST00000242059.9_1_7:29962257-29962479:-|nuORF ENST00000242059.9_1_7:29962257-29962479:-|nuORF ENST00000242059.9_1_7:29962257-29962479:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2159423828125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 96.968 1 96.968 96.468 97.468 0 0 0 0 0.21486 1 19000 19000 5.7604 0 1 30526 8188 20380 20391 30098 30098 -0.023875877025943737 MQGRPDGL 8 Unmodified _MQGRPDGL_ 0 0 0 ENST00000242059.9_1_7:29962257-29962479:-|nuORF ENST00000242059.9_1_7:29962257-29962479:-|nuORF ENST00000242059.9_1_7:29962257-29962479:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2161560058594 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 97.009 1 93.09 92.59 93.59 -3.9194 0 0 0 0.21039 1 18619 18619 16.942 3.4344 1 30527 8188 20380 20391 30099 30099 -0.023875877025943737 MQGWPMHL 8 Unmodified _MQGWPMHL_ 0 0 0 REV__ENST00000562955.2_2_1:43916973-43917366:+|nuORF REV__ENST00000562955.2_2_1:43916973-43917366:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 333.8290100097656 3 333.822819 998.446628 -0.74397 -0.00024835 -0.050109 -1.6727E-05 -0.79407 -0.00026508 333.82285434546714 51.82 0.55092 48.769 48.453 49.004 -3.0517 25 15 3 0 0 0 0.85653 1 9506 9506 1.8442 0 1 1023700 + 30528 23070 20381 20392 30100 30100 -0.052657666779737156 MQGWPMHL 8 Unmodified _MQGWPMHL_ 0 0 0 REV__ENST00000562955.2_2_1:43916973-43917366:+|nuORF REV__ENST00000562955.2_2_1:43916973-43917366:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 333.822819 998.446628 -0.44659 -0.00014908 -0.43497 -0.0001452 -0.88156 -0.00029429 333.82266005446195 51.667 0.57996 48.785 48.457 49.037 -2.8824 0.00065682 3.0016E-05 NaN 1.8442 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1729000 + 30529 23070 20381 20392 -0.052657666779737156 MQGWPMHL 8 Unmodified _MQGWPMHL_ 0 0 0 REV__ENST00000562955.2_2_1:43916973-43917366:+|nuORF REV__ENST00000562955.2_2_1:43916973-43917366:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 333.822819 998.446628 0.048116 1.6062E-05 -0.86043 -0.00028723 -0.81232 -0.00027117 333.82249285380107 51.845 0.49176 48.799 48.576 49.068 -3.0453 0.014965 -0.00039607 NaN 1.8442 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1296700 + 30530 23070 20381 20392 -0.052657666779737156 MQGWPMHL 8 Unmodified _MQGWPMHL_ 0 0 0 REV__ENST00000562955.2_2_1:43916973-43917366:+|nuORF REV__ENST00000562955.2_2_1:43916973-43917366:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 333.822819 998.446628 -0.74397 -0.00024835 -0.050109 -1.6727E-05 -0.79407 -0.00026508 333.82285434546714 51.82 0.55092 48.769 48.453 49.004 -3.0517 -0.015622 0.00041544 NaN 1.8442 25 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1023700 + 30531 23070 20381 20392 -0.052657666779737156 MQIGGIPILPC 11 Unmodified _MQIGGIPILPC_ 0 0 0 REV__ENSG00000127124|ENST00000372583|HIVEP3 REV__ENSG00000127124|ENST00000372583|HIVEP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2086181640625 3 381.208451 1140.60352 -0.12657 -4.8249E-05 0.91927 0.00035043 0.7927 0.00030218 381.54317276778653 33.245 0.59426 33.245 33.059 33.654 0 29 16 2 0 0 0 0.65515 1 6045 6045 3.0723 0 1 2449900 + 30532 15878 20382 20393 30101 30101 0.038844734217263976 MQVQAYNGG 9 Unmodified _MQVQAYNGG_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1490783691406 3 323.148248 966.422915 NaN NaN NaN NaN NaN NaN NaN 108.47 1 104.15 103.65 104.65 -4.32 0 0 0 0.23508 1 21373 21373 1.1933 0 1 30533 4161 20383 20394 30102 30102 -0.06163908910775717 MQWYFHRRLRE 11 Unmodified _MQWYFHRRLRE_ 0 0 0 REV__ENSG00000260903|ENST00000562532|XKR7 REV__ENSG00000260903|ENST00000562532|XKR7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2752685546875 3 541.277138 1620.80958 NaN NaN NaN NaN NaN NaN NaN 18.188 1 18.188 17.688 18.688 0 0 0 0 0.22632 1 2912 2912 0.094841 0.094277 1 + 30534 19884 20384 20395 30103 30103 0.02401182645166955 MQWYFHRRLRE 11 Unmodified _MQWYFHRRLRE_ 0 0 0 REV__ENSG00000260903|ENST00000562532|XKR7 REV__ENSG00000260903|ENST00000562532|XKR7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2771606445312 3 541.277138 1620.80958 NaN NaN NaN NaN NaN NaN NaN 157.64 1 157.64 157.14 158.14 0 0 0 0 0.22632 1 31643 31643 0.094841 0 1 + 30535 19884 20384 20395 30104 30104 0.02401182645166955 MQWYFHRRLRE 11 Unmodified _MQWYFHRRLRE_ 0 0 0 REV__ENSG00000260903|ENST00000562532|XKR7 REV__ENSG00000260903|ENST00000562532|XKR7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2789916992188 3 541.277138 1620.80958 NaN NaN NaN NaN NaN NaN NaN 174.12 1 174.12 173.62 174.62 0 0 0 0 0.22632 1 36035 36035 0.094841 0 1 + 30536 19884 20384 20395 30105 30105 0.02401182645166955 MQWYFHRRLRE 11 Unmodified _MQWYFHRRLRE_ 0 0 0 REV__ENSG00000260903|ENST00000562532|XKR7 REV__ENSG00000260903|ENST00000562532|XKR7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26025390625 3 541.277138 1620.80958 0.45637 0.00024702 -4.0323 -0.0021826 -3.5759 -0.0019355 541.2741426983442 118.53 0.14583 114.02 113.93 114.08 -4.502 5 3 2 0 0 0 0.82427 1 23354 23354 0.40827 0.32491 1 1071900 + 30537 19884 20384 20395 30106 30106 0.02401182645166955 MQWYFHRRLRE 11 Unmodified _MQWYFHRRLRE_ 0 0 0 REV__ENSG00000260903|ENST00000562532|XKR7 REV__ENSG00000260903|ENST00000562532|XKR7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.276123046875 3 541.277138 1620.80958 NaN NaN NaN NaN NaN NaN NaN 42.886 1 40.28 39.78 40.78 -2.606 0 0 0 0.22632 1 7724 7724 0.094841 0.068635 1 + 30538 19884 20384 20395 30107 30107 0.02401182645166955 MQWYFHRRLRE 11 Unmodified _MQWYFHRRLRE_ 0 0 0 REV__ENSG00000260903|ENST00000562532|XKR7 REV__ENSG00000260903|ENST00000562532|XKR7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2769165039062 3 541.277138 1620.80958 NaN NaN NaN NaN NaN NaN NaN 102.99 1 98.968 98.468 99.468 -4.0212 0 0 0 0.22632 1 19798 19798 0.094841 0 1 + 30539 19884 20384 20395 30108 30108 0.02401182645166955 MRAGGGLQ 8 Unmodified _MRAGGGLQ_ 0 0 0 REV__ENST00000587551.1_1_19:55791573-55791726:-|nuORF REV__ENST00000587551.1_1_19:55791573-55791726:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.2256774902344 2 395.20543 788.396307 NaN NaN NaN NaN NaN NaN NaN 96.458 1 92.361 91.861 92.861 -4.0978 0 0 0 0.2396 1 18917 18917 0.0082765 0 1 + 30540 23275 20385 20396 30109 30109 -0.006355530114547037 MRAGPAAAE 9 Unmodified _MRAGPAAAE_ 0 0 0 ENST00000561781.1_1_16:675821-676004:+|nuORF ENST00000561781.1_1_16:675821-676004:+|nuORF ENST00000561781.1_1_16:675821-676004:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2168884277344 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 83.412 1 79.539 79.039 80.039 -3.8736 0 0 0 0.23508 1 15843 15843 10.074 0.72649 1 30541 11308 20386 20397 30110 30110 -0.02387587702617111 MRDTESLA 8 Unmodified _MRDTESLA_ 0 0 0 nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI nc|ENSG00000107201|O95786-2|RIGI nc|ENSG00000107201|O95786-2|RIGI MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.15032958984375 3 308.148137 921.422581 NaN NaN NaN NaN NaN NaN NaN 97.968 1 93.699 93.199 94.199 -4.2692 0 0 0 0.21486 1 18722 18722 1.6526 0 1 30542 2417 20387 20398 30111 30111 -0.04127328630647753 MRDTESLA 8 Unmodified _MRDTESLA_ 0 0 0 nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI nc|ENSG00000107201|O95786-2|RIGI nc|ENSG00000107201|O95786-2|RIGI MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.1491394042969 3 308.148137 921.422581 NaN NaN NaN NaN NaN NaN NaN 98.367 1 94.098 93.598 94.598 -4.2692 0 0 0 0.21486 1 18803 18803 1.6526 0 1 30543 2417 20387 20398 30112 30112 -0.04127328630647753 MRDTESLA 8 Unmodified _MRDTESLA_ 0 0 0 nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI nc|ENSG00000107201|O95786-2|RIGI nc|ENSG00000107201|O95786-2|RIGI MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.1565856933594 3 308.148137 921.422581 NaN NaN NaN NaN NaN NaN NaN 95.637 1 91.756 91.256 92.256 -3.881 0 0 0 0.21486 1 18352 18352 1.6526 0 1 30544 2417 20387 20398 30113 30113 -0.04127328630647753 MRDTESLA 8 Unmodified _MRDTESLA_ 0 0 0 nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI nc|ENSG00000107201|O95786-2|RIGI nc|ENSG00000107201|O95786-2|RIGI MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 308.1535949707031 3 308.148137 921.422581 NaN NaN NaN NaN NaN NaN NaN 97.814 1 93.895 93.395 94.395 -3.9194 0 0 0 0.21486 1 18775 18775 3.9444 0 1 30545 2417 20387 20398 30114 30114 -0.04127328630647753 MRFLISII 8 Unmodified _MRFLISII_ 0 0 0 ENST00000436551.1_1_2:42159370-42160581:-|nuORF;ENST00000427054.5_1_2:42159356-42160581:-|nuORF ENST00000436551.1_1_2:42159370-42160581:-|nuORF ENST00000436551.1_1_2:42159370-42160581:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.27960205078125 3 331.536896 991.588859 -0.20678 -6.8554E-05 0.73478 0.00024361 0.528 0.00017505 331.5369430269831 127.78 0.7753 123.17 122.74 123.52 -4.6172 49 21 3 0 0 0 0.88942 1 25132 25132 0.40072 0 1 1962300 30546 9736 20388 20399 30115 30115 0.09272769335893827 MRFLISII 8 Unmodified _MRFLISII_ 0 0 0 ENST00000436551.1_1_2:42159370-42160581:-|nuORF;ENST00000427054.5_1_2:42159356-42160581:-|nuORF ENST00000436551.1_1_2:42159370-42160581:-|nuORF ENST00000436551.1_1_2:42159370-42160581:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 331.536896 991.588859 -0.20678 -6.8554E-05 0.73478 0.00024361 0.528 0.00017505 331.5369430269831 127.78 0.7753 123.17 122.74 123.52 -4.6172 -0.0057576 0.00044868 NaN 0.40072 49 21 3 NaN NaN NaN NaN 0 NaN NaN 0 1962300 30547 9736 20388 20399 0.09272769335893827 MRFLISII 8 Unmodified _MRFLISII_ 0 0 0 ENST00000436551.1_1_2:42159370-42160581:-|nuORF;ENST00000427054.5_1_2:42159356-42160581:-|nuORF ENST00000436551.1_1_2:42159370-42160581:-|nuORF ENST00000436551.1_1_2:42159370-42160581:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 331.536896 991.588859 -0.53443 -0.00017718 0.4837 0.00016036 -0.05073 -1.6819E-05 331.53702761317885 127.87 0.49078 123.17 122.93 123.42 -4.6998 0.0030386 0.00019896 NaN 0.40072 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1465800 30548 9736 20388 20399 0.09272769335893827 MRFRKGQGV 9 Unmodified _MRFRKGQGV_ 0 0 0 ENST00000531467.5_1_19:1041242-1041597:+|nuORF;ENST00000530703.1_1_19:1040142-1041440:+|nuORF;ENST00000526885.5_1_19:1040142-1041597:+|nuORF ENST00000531467.5_1_19:1041242-1041597:+|nuORF ENST00000531467.5_1_19:1041242-1041597:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201171875 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 133.07 1 128.27 127.77 128.77 -4.799 0 0 0 0.23508 1 25611 25611 2.2828 0.80087 1 30549 10921 20389 20400 30116 30116 0.050877336507710424 MRGGAGPDL 9 Unmodified _MRGGAGPDL_ 0 0 0 ENST00000361084.9_1_1:156030999-156031116:+|nuORF ENST00000361084.9_1_1:156030999-156031116:+|nuORF ENST00000361084.9_1_1:156030999-156031116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21612548828125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 117.81 1 117.81 117.31 118.31 0 0 0 0 0.23508 1 23205 23205 7.9102 0 1 30550 9019 20390 20401 30117 30117 -0.023875877025943737 MRGGAGPDL 9 Unmodified _MRGGAGPDL_ 0 0 0 ENST00000361084.9_1_1:156030999-156031116:+|nuORF ENST00000361084.9_1_1:156030999-156031116:+|nuORF ENST00000361084.9_1_1:156030999-156031116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2168884277344 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 99.894 1 95.905 95.405 96.405 -3.9895 0 0 0 0.23508 1 19184 19184 7.9102 2.1497 1 30551 9019 20390 20401 30118 30118 -0.023875877025943737 MRIAIKEI 8 Unmodified _MRIAIKEI_ 0 0 0 nc|ENSG00000103351|Q96AJ1-2|CLUAP1;ENSG00000103351|ENST00000576634|CLUAP1 nc|ENSG00000103351|Q96AJ1-2|CLUAP1 nc|ENSG00000103351|Q96AJ1-2|CLUAP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 325.1997375488281 3 325.200284 972.579022 NaN NaN NaN NaN NaN NaN NaN 123.74 1 119.14 118.64 119.64 -4.5926 0 0 0 0.21486 1 23817 23817 1.6526 0 1 30552 2184 20391 20402 30119 30119 0.09163581330506076 MRKIKKGLI 9 Unmodified _MRKIKKGLI_ 0 0 0 REV__nc|ENSG00000143498|Q15573-2|TAF1A REV__nc|ENSG00000143498|Q15573-2|TAF1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7966918945312 2 543.862629 1085.71071 NaN NaN NaN NaN NaN NaN NaN 68.337 1 65.158 64.658 65.658 -3.1796 0 0 0 0.23508 1 13271 13271 4.756 0 1 + 30553 16734 20392 20403 30120 30120 0.17127811418254169 MRKYRPIDRAY 11 Unmodified _MRKYRPIDRAY_ 0 0 0 REV__nc|ENSG00000164050|O43157-2|PLXNB1 REV__nc|ENSG00000164050|O43157-2|PLXNB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2680358886719 3 490.266239 1467.77689 NaN NaN NaN NaN NaN NaN NaN 44.561 1 44.561 44.061 45.061 0 0 0 0 0.22632 1 8363 8363 1.4074 1.2354 1 + 30554 17641 20393 20404 30121 30121 0.06170975522354638 MRLKLIAS 8 Unmodified _MRLKLIAS_ 0 0 0 ENSG00000077080|ENST00000160382|ACTL6B ENSG00000077080|ENST00000160382|ACTL6B ENSG00000077080|ENST00000160382|ACTL6B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.1969299316406 3 311.196762 930.568457 NaN NaN NaN NaN NaN NaN NaN 108.16 1 103.75 103.25 104.25 -4.4121 0 0 0 0.21486 1 20751 20751 0.40072 0 1 30555 1550 20394 20405 30122 30122 0.10039598676053174 MRLLVFFLL 9 Unmodified _MRLLVFFLL_ 0 0 0 REV__PCDHB12|p.G22R|1|0.14|ENSG00000120328|chr5:141208971-141208971|G/A|missense_variant REV__PCDHB12|p.G22R|1|0.14|ENSG00000120328|chr5:141208971-141208971|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3384399414062 2 576.354105 1150.69366 NaN NaN NaN NaN NaN NaN NaN 12.965 1 11.836 11.336 12.336 -1.1293 0 0 0 0.23508 1 1637 1637 2.0598 0.73022 1 + 30556 24445 20395 20406 30123 30123 0.1243389081244004 MRLRQLKRFRR 11 Unmodified _MRLRQLKRFRR_ 0 0 0 ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910-4|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2 ENST00000498186.5_1_7:148514900-148581332:-|nuORF ENST00000498186.5_1_7:148514900-148581332:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 780.6389770507812 2 780.48062 1558.94669 NaN NaN NaN NaN NaN NaN NaN 170.52 1 165.73 165.23 166.23 -4.7898 0 0 0 0.23698 1 34613 34613 0 0 1 30557 2385 20396 20407 30124 30124 0.1895713631538456 MRNRRRIQRR 10 Unmodified _MRNRRRIQRR_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7805480957031 3 481.288371 1440.84328 0.061716 2.9703E-05 -1.3915 -0.0006697 -1.3298 -0.00064 481.287611752524 18.897 0.16833 17.586 17.454 17.623 -1.3109 7 4 2 0 0 0 0.91149 1 3075 3075 0.69767 0.19171 1 177970 30558 6349 20397 20408 30125 30125 0.14049648927584713 MRNVMRFYYWR 11 Unmodified _MRNVMRFYYWR_ 0 0 0 ENST00000335790.7_1_11:8245870-8245915:-|nuORF ENST00000335790.7_1_11:8245870-8245915:-|nuORF ENST00000335790.7_1_11:8245870-8245915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.271484375 3 541.267474 1620.78059 NaN NaN NaN NaN NaN NaN NaN 105.9 1 101.64 101.14 102.14 -4.2638 0 0 0 0.22632 1 20848 20848 0.094841 0 1 30559 8802 20398 20409 30126 30126 -0.004966779754340678 MRNVMRFYYWR 11 Unmodified _MRNVMRFYYWR_ 0 0 0 ENST00000335790.7_1_11:8245870-8245915:-|nuORF ENST00000335790.7_1_11:8245870-8245915:-|nuORF ENST00000335790.7_1_11:8245870-8245915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.265869140625 3 541.267474 1620.78059 NaN NaN NaN NaN NaN NaN NaN 106.1 1 101.84 101.34 102.34 -4.2638 0 0 0 0.22632 1 20885 20885 0.50596 0.41111 1 30560 8802 20398 20409 30127 30127 -0.004966779754340678 MRNVMRFYYWR 11 Unmodified _MRNVMRFYYWR_ 0 0 0 ENST00000335790.7_1_11:8245870-8245915:-|nuORF ENST00000335790.7_1_11:8245870-8245915:-|nuORF ENST00000335790.7_1_11:8245870-8245915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2681274414062 3 541.267474 1620.78059 NaN NaN NaN NaN NaN NaN NaN 164.15 1 159.36 158.86 159.86 -4.7898 0 0 0 0.22632 1 32780 32780 0.00056442 0 1 30561 8802 20398 20409 30128 30128 -0.004966779754340678 MRRKRRMMKKR 11 Unmodified _MRRKRRMMKKR_ 0 0 0 PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 526.3336181640625 3 526.314764 1575.92246 NaN NaN NaN NaN NaN NaN NaN 156.94 1 151.66 151.16 152.16 -5.2712 0 0 0 0.22632 1 30444 30444 0.0072825 0 1 30562 12821 20399 20410 30129 30129 0.1575383656586382 MRSQYEREKRW 11 Unmodified _MRSQYEREKRW_ 0 0 0 ENST00000349824.8_1_7:50472214-50472292:+|nuORF ENST00000349824.8_1_7:50472214-50472292:+|nuORF ENST00000349824.8_1_7:50472214-50472292:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.689208984375 3 523.596536 1567.76778 0.21002 0.00010997 3.1467 0.0016476 3.3568 0.0017576 523.9326664872949 127.42 0.10684 122.73 122.64 122.75 -4.6998 4 2 2 0 0 0 0.89122 1 24500 24500 0.50596 0 1 1817700 30563 8923 20400 20411 30130 30130 0.006605821659832145 MRSYLRRAA 9 Unmodified _MRSYLRRAA_ 0 0 0 REV__nc|ENSG00000160360|Q86YR5-3|GPSM1 REV__nc|ENSG00000160360|Q86YR5-3|GPSM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20880126953125 3 375.209953 1122.60803 NaN NaN NaN NaN NaN NaN NaN 160.74 1 155.49 154.99 155.99 -5.2526 0 0 0 0.19651 1 31192 31192 0.40827 0 1 + 30564 17419 20401 20412 30131 30131 0.05163118679502077 MRTTKITE 8 Unmodified _MRTTKITE_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN;VCAN|p.E2431Rfs*10|1|0.16|ENSG00000038427|chr5:83540290-83540291|-/G|frameshift_variant nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2655029296875 2 490.265684 978.516816 NaN NaN NaN NaN NaN NaN NaN 108.9 1 104.72 104.22 105.22 -4.1826 0 0 0 0.23782 1 20959 20959 0.0082765 0 1 30565 1183 20402 20413 30132 30132 0.026698101914803374 MRVIQVWF 8 Unmodified _MRVIQVWF_ 0 0 0 LHX1|p.E399Kfs*2|5|0.23|ENSG00000273706|chr17:36943098-36943098|C/-|frameshift_variant;ENSG00000089116|ENST00000261731|LHX5;ENSG00000273706|ENST00000614239|LHX1 LHX1|p.E399Kfs*2|5|0.23|ENSG00000273706|chr17:36943098-36943098|C/-|frameshift_variant LHX1|p.E399Kfs*2|5|0.23|ENSG00000273706|chr17:36943098-36943098|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20147705078125 3 360.200395 1077.57936 NaN NaN NaN NaN NaN NaN NaN 88.559 1 88.559 88.059 89.059 0 0 0 0 0.21486 1 17284 17284 1.6526 0.17072 1 30566 1750 20403 20414 30133 30133 0.04367001050354702 MRWEEKERLRH 11 Unmodified _MRWEEKERLRH_ 0 0 0 REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|119|2|anti-sense REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|119|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.408935546875 2 785.406983 1568.79941 NaN NaN NaN NaN NaN NaN NaN 139 1 134.15 133.65 134.65 -4.8492 0 0 0 0.23698 1 26794 26794 2.4985 1.169 1 + 30567 23627 20404 20415 30134 30134 0.037765749199479615 MRWRRRVTRPR 11 Unmodified _MRWRRRVTRPR_ 0 0 0 ENST00000592505.1_1_19:11038470-11038518:-|nuORF;ENST00000253031.6_1_19:11034814-11038527:-|nuORF ENST00000592505.1_1_19:11038470-11038518:-|nuORF ENST00000592505.1_1_19:11038470-11038518:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.690185546875 3 523.975905 1568.90588 NaN NaN NaN NaN NaN NaN NaN 107.17 1 102.85 102.35 103.35 -4.32 0 0 0 0.22632 1 21103 21103 1.4551 1.2831 1 30568 8231 20405 20416 30135 30135 0.14418794995776807 MRWRWWQRLLP 11 Unmodified _MRWRWWQRLLP_ 0 0 0 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7803344726562 3 543.297873 1626.87179 0.76085 0.00041337 -0.36426 -0.0001979 0.39659 0.00021547 543.2979752421294 101.93 0.69961 101.93 101.61 102.3 0 26 19 2 0 0 0 0.89126 1 19959 19959 0.026206 0.026206 1 2288900 30569 6465 20406 20417 30136 30136 0.08342953784176643 MRWRWWQRLLP 11 Unmodified _MRWRWWQRLLP_ 0 0 0 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7843017578125 3 543.297873 1626.87179 -0.14942 -8.1178E-05 -0.40945 -0.00022245 -0.55886 -0.00030363 543.2980486707037 106.55 0.62805 102.29 102.08 102.71 -4.2638 37 17 3 0 0 0 0.89134 1 20950 20950 0.026206 0.026206 1 2130700 30570 6465 20406 20417 30137 30137 0.08342953784176643 MRWRWWQRLLP 11 Unmodified _MRWRWWQRLLP_ 0 0 0 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7842407226562 3 543.297873 1626.87179 0.033349 1.8119E-05 0.040692 2.2108E-05 0.074041 4.0226E-05 543.2984934728233 106.78 0.96828 102.37 101.65 102.62 -4.4121 40 27 2 0 0 0 0.89134 1 20384 20384 0.026206 0.026206 1 2352400 30571 6465 20406 20417 30138 30138 0.08342953784176643 MRWRWWQRLLP 11 Unmodified _MRWRWWQRLLP_ 0 0 0 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7840576171875 3 543.297873 1626.87179 0.81309 0.00044175 -0.5389 -0.00029279 0.27419 0.00014896 543.2982611411775 106.35 0.96786 102.26 101.57 102.54 -4.0913 47 27 3 0 0 0 0.89134 1 20363 20363 0.026206 0.026206 1 2272500 30572 6465 20406 20417 30139 30139 0.08342953784176643 MRWRWWQRLLP 11 Unmodified _MRWRWWQRLLP_ 0 0 0 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.1309814453125 3 543.297873 1626.87179 0.39745 0.00021593 3.0602 0.0016626 3.4576 0.0018785 543.3007156011046 145.55 0.20645 140.6 140.45 140.66 -4.9445 6 5 2 0 0 0 0.96227 1 28133 28133 0.094841 0 1 4131300 30573 6465 20406 20417 30140 30140 0.08342953784176643 MRYFDWEKAYR 11 Unmodified _MRYFDWEKAYR_ 0 0 0 REV__ENSG00000173409|ENST00000310256|ARV1 REV__ENSG00000173409|ENST00000310256|ARV1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2716064453125 3 522.250366 1563.72927 NaN NaN NaN NaN NaN NaN NaN 155.11 1 150.33 149.83 150.83 -4.7791 0 0 0 0.22632 1 30835 30835 0.50596 0.41111 1 + 30574 18354 20407 20418 30141 30141 -0.030047234685298463 MSAFRLWPG 9 Unmodified _MSAFRLWPG_ 0 0 0 ENSG00000112293|ENST00000230036|GPLD1;nc|ENSG00000112293|P80108-2|GPLD1;ENST00000378243.8_1_6:24473808-24489784:-|nuORF ENSG00000112293|ENST00000230036|GPLD1 ENSG00000112293|ENST00000230036|GPLD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2868041992188 2 532.770937 1063.52732 0.45309 0.00024139 -3.7735 -0.0020104 -3.3204 -0.001769 532.7675207605467 136.12 0.20239 131.23 131.11 131.31 -4.8951 8 5 2 0 0 0 0.58804 1 26148 26148 13.906 2.7916 1 1212000 30575 2682 20408 20419 30142 30142 -0.0019016236342395132 MSDDEMIHLFR 11 Unmodified _MSDDEMIHLFR_ 0 0 0 REV__nc|ENSG00000073614|P29375-2|KDM5A REV__nc|ENSG00000073614|P29375-2|KDM5A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.249267578125 3 465.212812 1392.61661 NaN NaN NaN NaN NaN NaN NaN 104.75 1 100.54 100.04 101.04 -4.2183 0 0 0 0.22632 1 20609 20609 3.0723 3.0461 1 + 30576 14302 20409 20420 30143 30143 -0.06399740256870246 MSDLYQETY 9 Unmodified _MSDLYQETY_ 0 0 0 ENSG00000136247|ENST00000335965|ZDHHC4;ENST00000474738.1_1_7:6624591-6628538:+|nuORF ENSG00000136247|ENST00000335965|ZDHHC4 ENSG00000136247|ENST00000335965|ZDHHC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3284301757812 2 575.242072 1148.46959 -0.026556 -1.5276E-05 0.046728 2.688E-05 0.020173 1.1604E-05 575.2421022646174 93.115 0.79349 89.124 88.693 89.487 -3.9907 57 22 3 0 0 0 0.35556 3 18200 18200;18204;18295 20.12 19.712 1 9500200 30577 3997 20410 20421 30144;30145;30146 30144 -0.09870513870146169 MSDLYQETY 9 Unmodified _MSDLYQETY_ 0 0 0 ENSG00000136247|ENST00000335965|ZDHHC4;ENST00000474738.1_1_7:6624591-6628538:+|nuORF ENSG00000136247|ENST00000335965|ZDHHC4 ENSG00000136247|ENST00000335965|ZDHHC4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 575.242072 1148.46959 0.32239 0.00018545 -0.20577 -0.00011837 0.11662 6.7082E-05 575.2420055404516 93.181 0.75414 89.038 88.659 89.413 -4.1435 -0.046753 -0.00020049 NaN 13.906 58 21 4 NaN NaN NaN NaN 0 NaN NaN 0 9144100 30578 3997 20410 20421 -0.09870513870146169 MSDLYQETY 9 Unmodified _MSDLYQETY_ 0 0 0 ENSG00000136247|ENST00000335965|ZDHHC4;ENST00000474738.1_1_7:6624591-6628538:+|nuORF ENSG00000136247|ENST00000335965|ZDHHC4 ENSG00000136247|ENST00000335965|ZDHHC4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.242072 1148.46959 0.087571 5.0375E-05 0.049987 2.8755E-05 0.13756 7.913E-05 575.2421272780552 92.935 0.78206 89.091 88.616 89.398 -3.844 0.0068469 9.3756E-05 NaN 13.906 53 22 3 NaN NaN NaN NaN 0 NaN NaN 0 6972500 30579 3997 20410 20421 -0.09870513870146169 MSDSYLPSYY 10 Oxidation (M) _M(Oxidation (M))SDSYLPSYY_ M(1)SDSYLPSYY M(51)SDSYLPSYY 0 0 1 YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant;YTHDF2|p.F459Sfs*15|1|0.27|ENSG00000198492|chr1:28743643-28743643|T/-|frameshift_variant;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant;YTHDF2|p.N136Kfs*2|1|0.37|ENSG00000198492|chr1:28742670-28742671|-/G|frameshift_variant YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.75927734375 2 621.255179 1240.49581 0.391 0.00024291 -0.26089 -0.00016208 0.13011 8.0831E-05 621.2550779300768 119.44 1.4998 119.44 118.85 120.35 0 140 42 5 0 0 0 0.044582 5 23491 23491;23495;23541;23581;23586 68.081 50.968 1 92955000 30580 7456 20411 20422 30147;30148;30149;30150;30151 30147 101 -0.11482244698686372 MSDSYLPSYY 10 Oxidation (M) _M(Oxidation (M))SDSYLPSYY_ M(1)SDSYLPSYY M(70)SDSYLPSYY 0 0 1 YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant;YTHDF2|p.F459Sfs*15|1|0.27|ENSG00000198492|chr1:28743643-28743643|T/-|frameshift_variant;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant;YTHDF2|p.N136Kfs*2|1|0.37|ENSG00000198492|chr1:28742670-28742671|-/G|frameshift_variant YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7588500976562 2 621.255179 1240.49581 1.1225 0.00069735 -1.1793 -0.00073265 -0.05682 -3.53E-05 621.2545114792849 124.69 1.5117 120.09 119.57 121.08 -4.5984 154 42 5 0 0 0 0.0044467 5 24612 24520;24530;24569;24612;24616 74.929 69.021 1 102200000 30581 7456 20411 20422 30152;30153;30154;30155;30156 30155 101 -0.11482244698686372 MSDSYLPSYY 10 Oxidation (M) _M(Oxidation (M))SDSYLPSYY_ M(1)SDSYLPSYY M(51)SDSYLPSYY 0 0 1 YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant;YTHDF2|p.F459Sfs*15|1|0.27|ENSG00000198492|chr1:28743643-28743643|T/-|frameshift_variant;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant;YTHDF2|p.N136Kfs*2|1|0.37|ENSG00000198492|chr1:28742670-28742671|-/G|frameshift_variant YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7587890625 2 621.255179 1240.49581 0.60816 0.00037782 -0.60388 -0.00037517 0.004278 2.6577E-06 621.2549003779354 124.77 1.9692 120.01 119.52 121.49 -4.7681 158 55 5 0 0 0 0.044582 4 23981 23939;23981;23985;24022 74.929 48.661 1 59826000 30582 7456 20411 20422 30157;30158;30159;30160 30158 101 -0.11482244698686372 MSDSYLPSYY 10 Oxidation (M) _M(Oxidation (M))SDSYLPSYY_ M(1)SDSYLPSYY M(92)SDSYLPSYY 0 0 1 YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant;YTHDF2|p.F459Sfs*15|1|0.27|ENSG00000198492|chr1:28743643-28743643|T/-|frameshift_variant;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant;YTHDF2|p.N136Kfs*2|1|0.37|ENSG00000198492|chr1:28742670-28742671|-/G|frameshift_variant YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7586669921875 2 621.255179 1240.49581 0.43288 0.00026893 -0.39416 -0.00024487 0.038726 2.4059E-05 621.2550339771235 124.56 2.388 119.91 119.38 121.77 -4.6495 171 66 5 0 0 0 0.018536 5 23991 23905;23947;23978;23991;23999 92.491 67.092 1 87837000 30583 7456 20411 20422 30161;30162;30163;30164;30165 30164 101 -0.11482244698686372 MSDYENDDECW 11 Unmodified _MSDYENDDECW_ 0 0 0 ENST00000556340.1_1_9:139265151-139266545:-|nuORF;nc|ENSG00000289701|Q9H257-3|CARD9;nc|ENSG00000289701|Q9H257-2|CARD9;ENSG00000187796|ENST00000371732|CARD9 ENST00000556340.1_1_9:139265151-139266545:-|nuORF ENST00000556340.1_1_9:139265151-139266545:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 469.7856140136719 3 469.488559 1405.44385 NaN NaN NaN NaN NaN NaN NaN 157.48 1 157.48 156.98 157.98 0 0 0 0 0.23698 1 31608 31608 0.094841 0 1 30584 7129 20412 20423 30166 30166 -0.24265776174752318 MSEDSNLHY 9 Unmodified _MSEDSNLHY_ 0 0 0 ENST00000529012.1_1_11:111795026-111796920:+|nuORF;ENSG00000149300|ENST00000278601|C11orf52;ENST00000527286.5_1_11:111789765-111796920:+|nuORF ENST00000529012.1_1_11:111795026-111796920:+|nuORF ENST00000529012.1_1_11:111795026-111796920:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7674560546875 2 548.224214 1094.43387 0.61687 0.00033818 -0.44562 -0.0002443 0.17125 9.3881E-05 548.224016402527 48.66 0.60112 48.66 48.279 48.88 0 40 16 3 0 0 0 0.03343 1 9162 9162 92.491 54.517 1 7666300 30585 4785 20413 20424 30167 30167 -0.109565513271491 MSEDSNLHY 9 Unmodified _MSEDSNLHY_ 0 0 0 ENST00000529012.1_1_11:111795026-111796920:+|nuORF;ENSG00000149300|ENST00000278601|C11orf52;ENST00000527286.5_1_11:111789765-111796920:+|nuORF ENST00000529012.1_1_11:111795026-111796920:+|nuORF ENST00000529012.1_1_11:111795026-111796920:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7890014648438 2 548.224214 1094.43387 0.013919 7.6307E-06 -0.16415 -8.9988E-05 -0.15023 -8.2358E-05 548.2242174402124 51.662 0.61242 48.78 48.457 49.07 -2.8824 48 17 4 0 0 0 0.054955 1 9811 9811 81.613 66.365 1 10072000 30586 4785 20413 20424 30168 30168 -0.109565513271491 MSEDSNLHY 9 Unmodified _MSEDSNLHY_ 0 0 0 ENST00000529012.1_1_11:111795026-111796920:+|nuORF;ENSG00000149300|ENST00000278601|C11orf52;ENST00000527286.5_1_11:111789765-111796920:+|nuORF ENST00000529012.1_1_11:111795026-111796920:+|nuORF ENST00000529012.1_1_11:111795026-111796920:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7724609375 2 548.224214 1094.43387 0.071815 3.9371E-05 -0.23705 -0.00012996 -0.16523 -9.0585E-05 548.2241477905696 51.89 0.66615 48.844 48.437 49.104 -3.0453 50 18 4 0 0 0 0.02941 1 9539 9539 114.65 68.628 1 7368600 30587 4785 20413 20424 30169 30169 -0.109565513271491 MSEDSNLHY 9 Unmodified _MSEDSNLHY_ 0 0 0 ENST00000529012.1_1_11:111795026-111796920:+|nuORF;ENSG00000149300|ENST00000278601|C11orf52;ENST00000527286.5_1_11:111789765-111796920:+|nuORF ENST00000529012.1_1_11:111795026-111796920:+|nuORF ENST00000529012.1_1_11:111795026-111796920:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7879028320312 2 548.224214 1094.43387 0.016477 9.0328E-06 -0.071545 -3.9223E-05 -0.055069 -3.019E-05 548.2242746967751 51.815 0.65148 48.763 48.453 49.104 -3.0517 55 18 4 0 0 0 0.061087 1 9575 9575 81.89 49.585 1 7029500 30588 4785 20413 20424 30170 30170 -0.109565513271491 MSEEDAHIY 9 Unmodified _MSEEDAHIY_ 0 0 0 ENST00000486708.1_1_22:31924838-31946432:+|nuORF ENST00000486708.1_1_22:31924838-31946432:+|nuORF ENST00000486708.1_1_22:31924838-31946432:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7804565429688 2 547.726589 1093.43863 0.30227 0.00016556 -3.2452 -0.0017775 -2.9429 -0.0016119 548.2243771668634 62.599 0.17474 59.359 59.243 59.418 -3.2395 5 4 2 0 0 0 0.63929 1 11726 11726 0.40827 0 1 257060 30589 10458 20414 20425 30171 30171 -0.10435667184401609 MSEEHTAVY 9 Unmodified _MSEEHTAVY_ 0 0 0 WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.268310546875 2 533.729132 1065.44371 0.14122 7.5375E-05 -0.095645 -5.1048E-05 0.045579 2.4327E-05 533.7291619519167 35.805 0.62035 35.805 35.52 36.14 0 46 17 4 0 0 0 0.019538 2 6573 6573;6627 92.822 56.778 1 36250000 30590 5839 20415 20426 30172;30173 30172 -0.08639363321776727 MSEEHTAVY 9 Unmodified _MSEEHTAVY_ 0 0 0 WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2701416015625 2 533.729132 1065.44371 -0.25148 -0.00013422 0.47539 0.00025373 0.22391 0.00011951 533.7293973462125 38.321 0.69921 35.852 35.573 36.272 -2.4688 50 19 3 0 0 0 0.019538 1 7090 7090 92.822 56.778 1 23322000 30591 5839 20415 20426 30174 30174 -0.08639363321776727 MSEEHTAVY 9 Unmodified _MSEEHTAVY_ 0 0 0 WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 533.729132 1065.44371 0.41697 0.00022255 -0.19941 -0.00010643 0.21756 0.00011612 533.7290442734148 38.27 0.81775 35.828 35.447 36.265 -2.4419 53 22 3 0 0 0 0.031632 1 6777 6777 92.822 56.778 1 22101000 30592 5839 20415 20426 30175 30175 -0.08639363321776727 MSEEHTAVY 9 Unmodified _MSEEHTAVY_ 0 0 0 WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2695922851562 2 533.729132 1065.44371 0.24982 0.00013334 -0.15779 -8.422E-05 0.092025 4.9116E-05 533.729115205269 38.167 0.86796 35.762 35.501 36.369 -2.4049 60 24 4 0 0 0 0.10297 1 6741 6741 54.774 31.625 1 17671000 30593 5839 20415 20426 30176 30176 -0.08639363321776727 MSEEHTAVY 9 Oxidation (M) _M(Oxidation (M))SEEHTAVY_ M(1)SEEHTAVY M(46)SEEHTAVY 0 0 1 WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2802124023438 2 541.726589 1081.43863 1.0249 0.00055522 -0.92615 -0.00050172 0.098752 5.3497E-05 541.7262438195584 28.251 0.69136 26.294 26.016 26.707 -1.9561 51 19 4 0 0 0 0.32263 1 5069 5069 46.021 22.873 1 4867700 30594 5839 20415 20427 30177 30177 88 -0.09883667184408296 MSEFSTETL 9 Unmodified _MSEFSTETL_ 0 0 0 REV__RTN4|p.R854Sfs*2|1|0.05|ENSG00000115310|chr2:55025537-55025538|-/AA|frameshift_variant REV__RTN4|p.R854Sfs*2|1|0.05|ENSG00000115310|chr2:55025537-55025538|-/AA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2601318359375 2 522.73134 1043.44813 0.63404 0.00033143 2.6384 0.0013792 3.2725 0.0017106 522.7328105464107 79.201 0.69032 79.201 78.819 79.509 0 34 19 2 0 0 0 0.74655 1 15381 15381 6.7232 0 1 2995000 + 30595 15421 20416 20428 30178 30178 -0.07185898898865162 MSEIADLTY 9 Unmodified _MSEIADLTY_ 0 0 0 nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1;EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant;EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;EPN1|p.L39I|1|0.35|ENSG00000063245|chr19:55678742-55678742|C/A|missense_variant nc|ENSG00000063245|Q9Y6I3-3|EPN1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2747802734375 2 521.741708 1041.46886 -0.24992 -0.0001304 0.34378 0.00017937 0.09386 4.897E-05 521.7417739187295 131.01 0.74214 126.37 125.86 126.61 -4.6359 31 20 2 0 0 0 0.10537 3 25844 25762;25773;25844 36.81 21.824 1 3812000 30596 1328 20417 20429 30179;30180;30181 30181 -0.05021308519212653 MSEIADLTY 9 Unmodified _MSEIADLTY_ 0 0 0 nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1;EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant;EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;EPN1|p.L39I|1|0.35|ENSG00000063245|chr19:55678742-55678742|C/A|missense_variant nc|ENSG00000063245|Q9Y6I3-3|EPN1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2657470703125 2 521.741708 1041.46886 -0.68929 -0.00035963 0.52725 0.00027509 -0.16204 -8.4541E-05 521.7420169962448 131.22 0.6924 126.39 125.99 126.69 -4.8355 35 19 3 0 0 0 0.048054 1 25182 25182 60.47 51.557 1 3430600 30597 1328 20417 20429 30182 30182 -0.05021308519212653 MSEIADLTY 9 Unmodified _MSEIADLTY_ 0 0 0 nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1;EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant;EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;EPN1|p.L39I|1|0.35|ENSG00000063245|chr19:55678742-55678742|C/A|missense_variant nc|ENSG00000063245|Q9Y6I3-3|EPN1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2633056640625 2 521.741708 1041.46886 0.23168 0.00012088 -0.13286 -6.932E-05 0.098821 5.1559E-05 521.7415124399259 131.15 0.59027 126.37 125.97 126.56 -4.7725 23 16 2 0 0 0 0.039965 2 25243 25226;25243 42.232 35.745 1 1389000 30598 1328 20417 20429 30183;30184 30184 -0.05021308519212653 MSFNYKCSWEF 11 Unmodified _MSFNYKCSWEF_ 0 0 0 REV__ENST00000310528.8_1_13:53262132-53262462:+|nuORF REV__ENST00000310528.8_1_13:53262132-53262462:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2442932128906 3 481.202024 1440.58424 NaN NaN NaN NaN NaN NaN NaN 102.19 1 102.19 101.69 102.69 0 0 0 0 0.22632 1 20071 20071 0.172 0.10814 1 + 30599 20479 20418 20430 30185 30185 -0.11842527659882762 MSFQSHMTL 9 Unmodified _MSFQSHMTL_ 0 0 0 ENSG00000178295|ENST00000381254|GEN1;GEN1|p.S753Rfs*9|1|0.09|ENSG00000178295|chr2:17781467-17781468|-/AAGA|frameshift_variant ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1407470703125 3 361.165022 1080.47324 -0.27908 -0.00010079 -0.30338 -0.00010957 -0.58246 -0.00021036 361.1648648231255 77.018 0.80206 73.603 73.18 73.982 -3.4151 34 22 3 0 0 0 0.87974 1 14992 14992 0 0 1 1498300 30600 6574 20419 20431 30186 30186 -0.0637812257728001 MSGEKVMREKL 11 Unmodified _MSGEKVMREKL_ 0 0 0 REV__nc|ENSG00000139631|Q9Y600-2|CSAD REV__nc|ENSG00000139631|Q9Y600-2|CSAD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2311706542969 3 436.565186 1306.67373 -0.023346 -1.0192E-05 -0.027621 -1.2058E-05 -0.050966 -2.225E-05 436.56527631051506 39.629 0.97889 37.187 36.513 37.492 -2.4419 69 27 5 0 0 0 0.80907 1 7031 7031 2.4348 0.34878 1 12351000 + 30601 16529 20420 20432 30187 30187 0.03265727019515907 MSGRGKGG 8 Unmodified _MSGRGKGG_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21771240234375 2 375.18978 748.365007 NaN NaN NaN NaN NaN NaN NaN 53.274 1 50.391 49.891 50.891 -2.8837 0 0 0 0.23584 1 10147 10147 0.68139 0 1 30602 5162 20421 20433 30188 30188 -0.019241260455487463 MSSSVDIAF 9 Unmodified _MSSSVDIAF_ 0 0 0 REV__ITIH6|p.V287A|1|0.39|ENSG00000102313|chrX:54774124-54774124|A/G|missense_variant REV__ITIH6|p.V287A|1|0.39|ENSG00000102313|chrX:54774124-54774124|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7217712402344 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 125.53 1 125.53 125.03 126.03 0 0 0 0 0.20628 1 24758 24758 21.747 2.3076 1 + 30603 23684 20422 20434 30189 30189 -0.04741560345121343 MSSVKKTSTL 10 Unmodified _MSSVKKTSTL_ 0 0 0 REV__ENSG00000144820|ENST00000273352|ADGRG7 REV__ENSG00000144820|ENST00000273352|ADGRG7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2589721679688 2 541.299724 1080.5849 NaN NaN NaN NaN NaN NaN NaN 14.882 1 13.672 13.172 14.172 -1.2106 0 0 0 0.22588 1 2010 2010 2.9952 0 1 + 30604 16804 20423 20435 30190 30190 0.04782635051492434 MSSWMELYPT 10 Unmodified _MSSWMELYPT_ 0 0 0 nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7677001953125 2 622.769942 1243.52533 NaN NaN NaN NaN NaN NaN NaN 40.49 1 40.49 39.99 40.99 0 0 0 0 2.8426 1 7531 7531 0.043787 0 1 30605 7274 20424 20436 30191 30191 -0.08669003954196342 MSVEWNGDGT 10 Unmodified _MSVEWNGDGT_ 0 0 0 nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7750854492188 2 548.224214 1094.43387 0.097311 5.3348E-05 -0.6263 -0.00034335 -0.52899 -0.00029 548.7253848495109 138.47 0.20621 133.52 133.43 133.63 -4.952 6 5 2 0 0 0 1.12 1 26648 26648 0.063865 0 1 1334700 30606 3417 20425 20437 30192 30192 -0.109565513271491 MSVLSLILY 9 Unmodified _MSVLSLILY_ 0 0 0 ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9 ENSG00000117834|ENST00000438567|SLC5A9 ENSG00000117834|ENST00000438567|SLC5A9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 346.86907958984375 3 346.868311 1037.5831 NaN NaN NaN NaN NaN NaN NaN 87.523 1 83.773 83.273 84.273 -3.7501 0 0 0 0.19705 1 16747 16747 2.8827 0 1 30607 3004 20426 20438 30193 30193 0.06581626033562316 MSVRRDGV 8 Unmodified _MSVRRDGV_ 0 0 0 REV__ENST00000367073.5_1_6:159291257-159316268:+|nuORF REV__ENST00000367073.5_1_6:159291257-159316268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2430419921875 2 460.242544 918.470534 NaN NaN NaN NaN NaN NaN NaN 133.41 1 128.59 128.09 129.09 -4.8175 0 0 0 0.22847 1 25676 25676 10.074 9.3925 1 + 30608 20909 20427 20439 30194 30194 0.008037900800673015 MSVVPPELV 9 Unmodified _MSVVPPELV_ 0 0 0 REV__nc|ENSG00000159140|P18583-6|SON REV__nc|ENSG00000159140|P18583-6|SON MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1796569824219 3 324.180778 969.520504 NaN NaN NaN NaN NaN NaN NaN 70.716 1 67.467 66.967 67.967 -3.2492 0 0 0 0.23508 1 13766 13766 2.7352 0.89096 1 + 30609 17359 20428 20440 30195 30195 0.034524799653581795 MSYDPTLEVSC 11 Unmodified _MSYDPTLEVSC_ 0 0 0 REV__ENSG00000100359|ENST00000248929|SGSM3 REV__ENSG00000100359|ENST00000248929|SGSM3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.763427734375 2 622.762314 1243.51008 NaN NaN NaN NaN NaN NaN NaN 106.11 1 106.11 105.61 106.61 0 0 0 0 0.22632 1 20855 20855 0.58532 0.51206 1 + 30610 14700 20429 20441 30196 30196 -0.10193915542026843 MSYRRRKDSR 10 Unmodified _MSYRRRKDSR_ 0 0 0 REV__nc|ENSG00000158816|Q5TIE3-3|VWA5B1 REV__nc|ENSG00000158816|Q5TIE3-3|VWA5B1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 452.7231140136719 3 452.242205 1353.70478 NaN NaN NaN NaN NaN NaN NaN 97.716 1 93.796 93.296 94.296 -3.9194 0 0 0 2.8426 1 18754 18754 0.013265 0 1 + 30611 17349 20430 20442 30197 30197 0.04208061168628774 MTALEPNVS 9 Unmodified _MTALEPNVS_ 0 0 0 REV__nc|ENSG00000120160|Q9NQ60-3|EQTN REV__nc|ENSG00000120160|Q9NQ60-3|EQTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2364807128906 2 481.236593 960.458632 -0.017256 -8.3044E-06 1.1527 0.00055472 1.1354 0.00054641 481.23749774443615 72.952 0.70074 72.952 72.505 73.206 0 39 19 3 0 0 0 0.31714 1 14141 14141 30.637 0 1 3773500 + 30612 15613 20431 20443 30198 30198 -0.02317871453783482 MTAQDLVSL 9 Unmodified _MTAQDLVSL_ 0 0 0 ENSG00000183317|ENST00000373048|EPHA10;ENST00000446149.6_1_1:38181546-38201012:-|nuORF ENSG00000183317|ENST00000373048|EPHA10 ENSG00000183317|ENST00000373048|EPHA10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2545166015625 2 489.252243 976.489932 0.30401 0.00014874 -0.12518 -6.1247E-05 0.17882 8.749E-05 489.25218890488986 113.77 1.1157 109.5 108.95 110.07 -4.2725 71 31 3 0 0 0 0.40602 1 21933 21933 25.399 0 1 31174000 30613 6841 20432 20444 30199 30199 0.00074701580308556 MTAYELCC 8 Unmodified _MTAYELCC_ 0 0 0 REV__nc|ENSG00000197121|Q75T13-4|PGAP1 REV__nc|ENSG00000197121|Q75T13-4|PGAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 467.17864990234375 2 467.179375 932.344196 NaN NaN NaN NaN NaN NaN NaN 155.6 1 155.6 155.1 156.1 0 0 0 0 0.21486 1 31195 31195 2.5775 0 1 + 30614 19306 20433 20445 30200 30200 -0.12468220531741281 MTCHEPFME 9 Unmodified _MTCHEPFME_ 0 0 0 REV__ENSG00000104714|ENST00000262109|ERICH1 REV__ENSG00000104714|ENST00000262109|ERICH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.20501708984375 3 375.478501 1123.41367 -0.55318 -0.00020771 1.7325 0.00065053 1.1794 0.00044283 375.47931899725273 38.689 0.48904 36.14 35.873 36.363 -2.5491 27 13 3 0 0 0 0.87918 1 7219 7219 1.0715 0 1 1513000 + 30615 14935 20434 20446 30201 30201 -0.1430976158296744 MTDIKNDSY 9 Unmodified _MTDIKNDSY_ 0 0 0 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7821655273438 2 543.742239 1085.46993 -0.099788 -5.4259E-05 0.014683 7.984E-06 -0.085104 -4.6275E-05 543.7423441684969 38.688 1.1229 36.139 35.596 36.719 -2.5491 110 31 6 0 0 0 7.605200000000001E-24 2 7114 7114;7261 173.69 112.33 1 88340000 30616 4115 20435 20447 30202;30203 30202 -0.06939094150311576 MTDIKNDSY 9 Unmodified _MTDIKNDSY_ 0 0 0 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7894287109375 2 543.742239 1085.46993 0.066265 3.6031E-05 -0.082187 -4.4689E-05 -0.015922 -8.6574E-06 543.7423005838377 38.654 0.98093 36.213 35.74 36.721 -2.4419 116 27 6 0 0 0 0.21532 1 6964 6964 36.506 5.2379 1 94014000 30617 4115 20435 20447 30204 30204 -0.06939094150311576 MTDIKNDSY 9 Unmodified _MTDIKNDSY_ 0 0 0 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7858276367188 2 543.742239 1085.46993 NaN NaN NaN NaN NaN NaN NaN 39.45 1 37.008 36.508 37.508 -2.4419 0 0 0 0.18064 1 7046 7046 26.268 7.0112 1 30618 4115 20435 20447 30205 30205 -0.06939094150311576 MTDIKNDSY 9 Unmodified _MTDIKNDSY_ 0 0 0 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7947998046875 2 543.742239 1085.46993 NaN NaN NaN NaN NaN NaN NaN 39.579 1 37.137 36.637 37.637 -2.4419 0 0 0 0.23108 1 7071 7071 14.405 2.7651 1 30619 4115 20435 20447 30206 30206 -0.06939094150311576 MTDIKNDSY 9 Unmodified _MTDIKNDSY_ 0 0 0 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.742239 1085.46993 0.36612 0.00019907 -0.30718 -0.00016703 0.058936 3.2046E-05 543.7421243829177 36.033 1.0416 36.033 35.554 36.595 0 -0.10831 -0.00016214 NaN 173.69 89 29 4 NaN NaN NaN NaN 0 NaN NaN 0 96839000 30620 4115 20435 20447 -0.06939094150311576 MTDIKNDSY 9 Unmodified _MTDIKNDSY_ 0 0 0 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.742239 1085.46993 0.26306 0.00014304 -0.27463 -0.00014933 -0.011569 -6.2904E-06 543.7422263958593 38.586 1.3925 36.181 35.603 36.996 -2.4049 0.03992 -0.00012674 NaN 173.69 121 39 6 NaN NaN NaN NaN 0 NaN NaN 0 79608000 30621 4115 20435 20447 -0.06939094150311576 MTDKAPPGV 9 Unmodified _MTDKAPPGV_ 0 0 0 ENSG00000162545|ENST00000375078|CAMK2N1;ENST00000489020.1_1_1:20810144-20811127:-|nuORF ENSG00000162545|ENST00000375078|CAMK2N1 ENSG00000162545|ENST00000375078|CAMK2N1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2340393066406 2 458.233853 914.453153 0.29276 0.00013415 -0.11463 -5.2526E-05 0.17813 8.1627E-05 458.23375244855737 35.884 1.6463 35.884 35.346 36.993 0 79 46 2 0 0 0 0.10083 7 6740 6551;6574;6603;6647;6694;6740;6784 55.503 23.574 1 2967500 30622 5343 20436 20448 30207;30208;30209;30210;30211;30212;30213 30212 -0.007495502455867609 MTDKAPPGV 9 Unmodified _MTDKAPPGV_ 0 0 0 ENSG00000162545|ENST00000375078|CAMK2N1;ENST00000489020.1_1_1:20810144-20811127:-|nuORF ENSG00000162545|ENST00000375078|CAMK2N1 ENSG00000162545|ENST00000375078|CAMK2N1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.234130859375 2 458.233853 914.453153 -0.41436 -0.00018987 -0.57873 -0.0002652 -0.99309 -0.00045507 458.2341079919599 38.574 1.5731 36.024 35.391 36.964 -2.5491 99 44 3 0 0 0 0.012534 15 7183 7033;7038;7041;7087;7089;7133;7134;7180;7183;7210;7227;7232;7272;7278;7326 99.755 52.007 1 3390800 30623 5343 20436 20448 30214;30215;30216;30217;30218;30219;30220;30221;30222;30223;30224;30225;30226;30227;30228 30222 -0.007495502455867609 MTDKAPPGV 9 Unmodified _MTDKAPPGV_ 0 0 0 ENSG00000162545|ENST00000375078|CAMK2N1;ENST00000489020.1_1_1:20810144-20811127:-|nuORF ENSG00000162545|ENST00000375078|CAMK2N1 ENSG00000162545|ENST00000375078|CAMK2N1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23388671875 2 458.233853 914.453153 -0.0019341 -8.8626E-07 -0.11906 -5.4557E-05 -0.12099 -5.5443E-05 458.2339290771125 38.486 1.6184 36.044 35.412 37.031 -2.4419 96 45 3 0 0 0 0.029139 6 6913 6809;6860;6913;6959;7008;7040 82.529 34.994 1 4098700 30624 5343 20436 20448 30229;30230;30231;30232;30233;30234 30231 -0.007495502455867609 MTDKAPPGV 9 Unmodified _MTDKAPPGV_ 0 0 0 ENSG00000162545|ENST00000375078|CAMK2N1;ENST00000489020.1_1_1:20810144-20811127:-|nuORF ENSG00000162545|ENST00000375078|CAMK2N1 ENSG00000162545|ENST00000375078|CAMK2N1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2244873046875 2 458.233853 914.453153 0.17347 7.949E-05 0.040647 1.8626E-05 0.21412 9.8116E-05 458.2338217275392 38.377 1.5968 35.972 35.364 36.961 -2.4049 86 45 2 0 0 0 0.031786 12 6914 6716;6730;6770;6776;6820;6856;6859;6863;6906;6913;6914;6948 79.596 43.107 1 2540500 30625 5343 20436 20448 30235;30236;30237;30238;30239;30240;30241;30242;30243;30244;30245;30246 30245 -0.007495502455867609 MTEAELRVK 9 Unmodified _MTEAELRVK_ 0 0 0 REV__ENST00000340281.8_2_1:90473226-90475716:+|nuORF REV__ENST00000340281.8_2_1:90473226-90475716:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2000427246094 3 359.53047 1075.56958 0.0028062 1.0089E-06 0.046859 1.6847E-05 0.049665 1.7856E-05 359.5304795159594 47.184 0.71549 44.241 43.864 44.579 -2.9421 67 20 4 0 0 0 0.65387 1 8537 8537 6.1918 1.663 1 11690000 + 30626 20703 20437 20449 30247 30247 0.03481768254300732 MTEAELRVK 9 Unmodified _MTEAELRVK_ 0 0 0 REV__ENST00000340281.8_2_1:90473226-90475716:+|nuORF REV__ENST00000340281.8_2_1:90473226-90475716:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 359.53047 1075.56958 0.028475 1.0238E-05 0.1344 4.8321E-05 0.16287 5.8558E-05 359.53046429624845 44.28 0.89255 44.28 43.712 44.605 0 0.045672 -0.00027789 NaN 6.1918 61 25 3 NaN NaN NaN NaN 0 NaN NaN 0 7081700 + 30627 20703 20437 20449 0.03481768254300732 MTEAELRVK 9 Unmodified _MTEAELRVK_ 0 0 0 REV__ENST00000340281.8_2_1:90473226-90475716:+|nuORF REV__ENST00000340281.8_2_1:90473226-90475716:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.53047 1075.56958 -0.31169 -0.00011206 0.47852 0.00017204 0.16683 5.9982E-05 359.53061631811954 47.051 0.82968 44.21 43.798 44.628 -2.8409 -0.024336 9.3276E-05 NaN 6.1918 60 23 3 NaN NaN NaN NaN 0 NaN NaN 0 10862000 + 30628 20703 20437 20449 0.03481768254300732 MTEAELRVK 9 Unmodified _MTEAELRVK_ 0 0 0 REV__ENST00000340281.8_2_1:90473226-90475716:+|nuORF REV__ENST00000340281.8_2_1:90473226-90475716:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.53047 1075.56958 0.0028062 1.0089E-06 0.046859 1.6847E-05 0.049665 1.7856E-05 359.5304795159594 47.184 0.71549 44.241 43.864 44.579 -2.9421 0.0070531 -0.00037231 NaN 6.1918 67 20 4 NaN NaN NaN NaN 0 NaN NaN 0 11690000 + 30629 20703 20437 20449 0.03481768254300732 MTEAELRVK 9 Unmodified _MTEAELRVK_ 0 0 0 REV__ENST00000340281.8_2_1:90473226-90475716:+|nuORF REV__ENST00000340281.8_2_1:90473226-90475716:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 359.53047 1075.56958 -0.77961 -0.00028029 0.9196 0.00033063 0.13999 5.0332E-05 359.5307722281753 47.156 0.96761 44.206 43.775 44.743 -2.9499 -0.028389 0.00056903 NaN 6.1918 74 27 4 NaN NaN NaN NaN 0 NaN NaN 0 8497100 + 30630 20703 20437 20449 0.03481768254300732 MTECECMC 8 Unmodified _MTECECMC_ 0 0 0 nc|ENSG00000188487|Q1MX18-4|INSC;nc|ENSG00000188487|Q1MX18-6|INSC;ENSG00000188487|ENST00000379556|INSC;nc|ENSG00000188487|Q1MX18-5|INSC;nc|ENSG00000188487|Q1MX18|INSC nc|ENSG00000188487|Q1MX18-4|INSC nc|ENSG00000188487|Q1MX18-4|INSC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.11737060546875 3 317.09126 948.251952 NaN NaN NaN NaN NaN NaN NaN 101.83 1 97.51 97.01 98.01 -4.3208 0 0 0 0.21486 1 19489 19489 1.6526 1.6526 1 30631 7171 20438 20450 30248 30248 -0.22424389931927635 MTEESEGPNM 10 Unmodified _MTEESEGPNM_ 0 0 0 ENSG00000162929|ENST00000402291|SANBR;nc|ENSG00000162929|Q6NSI8-2|SANBR;nc|ENSG00000162929|Q6NSI8-4|SANBR ENSG00000162929|ENST00000402291|SANBR ENSG00000162929|ENST00000402291|SANBR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2049255371094 3 375.479335 1123.41618 -0.50921 -0.0001912 -0.42201 -0.00015845 -0.93121 -0.00034965 375.4792206518063 38.599 0.42155 36.194 35.984 36.406 -2.4049 24 11 3 0 0 0 0.91149 1 6896 6896 3.5871 2.3937 1 1125600 30632 5385 20439 20451 30249 30249 -0.1405963464433171 MTERLREM 8 Unmodified _MTERLREM_ 0 0 0 MMP13|p.I370Nfs*3|1|0.33|ENSG00000137745|chr11:102947993-102947994|-/T|frameshift_variant;ENSG00000137745|ENST00000260302|MMP13 MMP13|p.I370Nfs*3|1|0.33|ENSG00000137745|chr11:102947993-102947994|-/T|frameshift_variant MMP13|p.I370Nfs*3|1|0.33|ENSG00000137745|chr11:102947993-102947994|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2784423828125 2 533.262619 1064.51068 NaN NaN NaN NaN NaN NaN NaN 147.64 1 142.58 142.08 143.08 -5.0595 0 0 0 0.23312 1 28589 28589 6.2058 1.3088 1 30633 4102 20440 20452 30250 30250 -0.018990313116773905 MTESTWARV 9 Unmodified _MTESTWARV_ 0 0 0 REV__ENSG00000243978|ENST00000520821|RTL9 REV__ENSG00000243978|ENST00000520821|RTL9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2607421875 2 540.760766 1079.50698 0.43104 0.00023309 0.051353 2.777E-05 0.48239 0.00026086 541.2608841801049 88.258 0.59647 84.262 83.938 84.534 -3.9953 43 16 3 0 0 0 0.27986 1 16822 16822 32.786 9.6373 1 5233900 + 30634 19806 20441 20453 30251 30251 -0.029593778138860216 MTESTWARV 9 Unmodified _MTESTWARV_ 0 0 0 REV__ENSG00000243978|ENST00000520821|RTL9 REV__ENSG00000243978|ENST00000520821|RTL9 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.760766 1079.50698 0.25471 0.00013774 1.0668 0.00057691 1.3216 0.00071465 541.2614424751879 87.939 0.62866 84.188 83.872 84.5 -3.7501 -0.03688 0.00065666 NaN 32.786 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4470600 + 30635 19806 20441 20453 -0.029593778138860216 MTFQYRKL 8 Unmodified _MTFQYRKL_ 0 0 0 ENSG00000188981|ENST00000438480|MSANTD1 ENSG00000188981|ENST00000438480|MSANTD1 ENSG00000188981|ENST00000438480|MSANTD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.793212890625 2 543.791869 1085.56919 0.07579 4.1214E-05 2.5647 0.0013946 2.6404 0.0014359 543.7936176140104 69.529 0.25055 69.529 69.421 69.672 0 8 6 2 0 0 0 0.73426 1 13473 13473 9.3474 0 1 1001800 30636 7210 20442 20454 30252 30252 0.029823933251009294 MTGGKSSQ 8 Unmodified _MTGGKSSQ_ 0 0 0 ENST00000311380.8_1_10:32197575-32197641:-|nuORF ENST00000311380.8_1_10:32197575-32197641:-|nuORF ENST00000311380.8_1_10:32197575-32197641:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 398.2029113769531 2 398.186903 794.359253 NaN NaN NaN NaN NaN NaN NaN 69.054 1 65.875 65.375 66.375 -3.1796 0 0 0 0.23025 1 13421 13421 0.12286 0 1 30637 8651 20443 20455 30253 30253 -0.046152693478802576 MTHNKGVS 8 Unmodified _MTHNKGVS_ 0 0 0 ENSG00000204424|ENST00000375832|LY6G6F;nc|ENSG00000204424|Q5SQ64-2|LY6G6F ENSG00000204424|ENST00000375832|LY6G6F ENSG00000204424|ENST00000375832|LY6G6F MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22930908203125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 89.389 1 85.345 84.845 85.845 -4.0443 0 0 0 0.2343 1 17031 17031 0.12286 0 1 30638 7578 20444 20456 30254 30254 -0.023875877025943737 MTIEASSNP 9 Unmodified _MTIEASSNP_ 0 0 0 REV__HYDIN|p.V423M|1|0.21|ENSG00000157423|chr16:71115756-71115756|C/T|missense_variant REV__HYDIN|p.V423M|1|0.21|ENSG00000157423|chr16:71115756-71115756|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1481628417969 3 317.148025 948.422247 NaN NaN NaN NaN NaN NaN NaN 103.01 1 98.993 98.493 99.493 -4.0212 0 0 0 0.23508 1 19803 19803 2.4985 0.84587 1 + 30639 23645 20445 20457 30255 30255 -0.054027483505024065 MTILPPLE 8 Unmodified _MTILPPLE_ 0 0 0 ENSG00000167701|ENST00000394955|GPT ENSG00000167701|ENST00000394955|GPT ENSG00000167701|ENST00000394955|GPT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 305.15777587890625 3 305.173623 912.499041 NaN NaN NaN NaN NaN NaN NaN 95.41 1 91.36 90.86 91.86 -4.0496 0 0 0 0.21486 1 18701 18701 1.6526 1.1943 1 30640 5837 20446 20458 30256 30256 0.03929094936643196 MTILPPLE 8 Unmodified _MTILPPLE_ 0 0 0 ENSG00000167701|ENST00000394955|GPT ENSG00000167701|ENST00000394955|GPT ENSG00000167701|ENST00000394955|GPT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 305.1858825683594 3 305.173623 912.499041 NaN NaN NaN NaN NaN NaN NaN 106.59 1 102.32 101.82 102.82 -4.2638 0 0 0 0.21486 1 20982 20982 1.6526 1.1943 1 30641 5837 20446 20458 30257 30257 0.03929094936643196 MTILPPLE 8 Unmodified _MTILPPLE_ 0 0 0 ENSG00000167701|ENST00000394955|GPT ENSG00000167701|ENST00000394955|GPT ENSG00000167701|ENST00000394955|GPT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 305.19580078125 3 305.173623 912.499041 NaN NaN NaN NaN NaN NaN NaN 107.78 1 103.46 102.96 103.96 -4.32 0 0 0 0.21486 1 21231 21231 1.6526 1.1943 1 30642 5837 20446 20458 30258 30258 0.03929094936643196 MTKLSFLRQ 9 Unmodified _MTKLSFLRQ_ 0 0 0 REV__nc|ENSG00000100890|O15091-2|PRORP REV__nc|ENSG00000100890|O15091-2|PRORP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21435546875 3 375.214593 1122.62195 0.18117 6.7977E-05 -0.26262 -9.8539E-05 -0.081452 -3.0562E-05 375.21445113160513 34.805 0.55738 32.552 32.254 32.811 -2.2527 39 15 4 0 0 0 0.5428 1 6068 6068 0.073264 0 1 3855600 + 30643 14747 20447 20459 30259 30259 0.0655435138789926 MTKVEKAQM 9 Unmodified _MTKVEKAQM_ 0 0 0 HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27685546875 2 533.275195 1064.53584 NaN NaN NaN NaN NaN NaN NaN 146.22 1 141.22 140.72 141.72 -5 0 0 0 0.18966 1 28293 28293 2.6312 0 1 30644 11922 20448 20460 30260 30260 0.006150234909000574 MTLPPHGP 8 Unmodified _MTLPPHGP_ 0 0 0 ENSG00000111678|ENST00000229281|C12orf57 ENSG00000111678|ENST00000229281|C12orf57 ENSG00000111678|ENST00000229281|C12orf57 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2507019042969 2 425.218006 848.421459 NaN NaN NaN NaN NaN NaN NaN 141.94 1 137.07 136.57 137.57 -4.8678 0 0 0 0.21323 1 27387 27387 14.582 5.9884 1 30645 2636 20449 20461 30261 30261 -0.008814982088892975 MTLSEGRE 8 Unmodified _MTLSEGRE_ 0 0 0 ENST00000223095.4_1_7:100780802-100780919:+|nuORF ENST00000223095.4_1_7:100780802-100780919:+|nuORF ENST00000223095.4_1_7:100780802-100780919:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.1492614746094 3 308.148137 921.422581 NaN NaN NaN NaN NaN NaN NaN 99.786 1 95.653 95.153 96.153 -4.1326 0 0 0 0.21486 1 19608 19608 0.40072 0 1 30646 8139 20450 20462 30262 30262 -0.04127328630636384 MTLWFTQGLPD 11 Unmodified _MTLWFTQGLPD_ 0 0 0 ENST00000513372.5_1_4:2256680-2256926:-|nuORF ENST00000513372.5_1_4:2256680-2256926:-|nuORF ENST00000513372.5_1_4:2256680-2256926:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.216796875 3 436.88128 1307.62201 0.48436 0.00021161 -2.1423 -0.00093595 -1.658 -0.00072434 437.2159252112922 108.84 1.2238 104.66 104.21 105.44 -4.1826 48 34 2 0 0 0 0.81043 1 20940 20940 2.2527 0.16876 1 639180 30647 10762 20451 20463 30263 30263 -0.019496934027529278 MTPRIQGP 8 Unmodified _MTPRIQGP_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.1153869628906 2 450.242012 898.469472 0.45373 0.00020429 -0.65046 -0.00029286 -0.19673 -8.8576E-05 450.2417322757564 29.821 0.5206 27.704 27.421 27.941 -2.1167 40 14 3 0 0 0 1.0249 1 5318 5318 5.7604 5.7604 1 7393400 + 30648 18352 20452 20464 30264 30264 0.0161757571115686 MTPRIQGP 8 Unmodified _MTPRIQGP_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 450.242012 898.469472 0.28471 0.00012819 -0.22766 -0.0001025 0.057043 2.5683E-05 450.241926918833 27.682 0.68859 27.682 27.25 27.939 0 -0.047549 0.00019362 NaN 5.7604 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 7261300 + 30649 18352 20452 20464 0.0161757571115686 MTPRIQGP 8 Unmodified _MTPRIQGP_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 450.242012 898.469472 0.30197 0.00013596 -0.3745 -0.00016862 -0.072535 -3.2658E-05 450.2419322330338 29.678 1.048 27.785 27.123 28.171 -1.8928 0.055764 6.1392E-05 NaN 5.7604 65 29 5 NaN NaN NaN NaN 0 NaN NaN 0 8429000 + 30650 18352 20452 20464 0.0161757571115686 MTPRIQGP 8 Unmodified _MTPRIQGP_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 450.242012 898.469472 0.45817 0.00020629 -0.49792 -0.00022419 -0.039752 -1.7898E-05 450.2418193526768 29.821 0.6974 27.747 27.309 28.007 -2.0743 0.017463 -4.9745E-05 NaN 5.7604 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 5960000 + 30651 18352 20452 20464 0.0161757571115686 MTQVIHSI 8 Unmodified _MTQVIHSI_ 0 0 0 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1700439453125 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 112.4 1 108.12 107.62 108.62 -4.2725 0 0 0 0.21486 1 21644 21644 3.2813 0 1 30652 6983 20453 20465 30265 30265 0.018144425083505666 MTRMYENFQY 10 Unmodified _MTRMYENFQY_ 0 0 0 CLEC10A|p.T4M|1|0.23|ENSG00000132514|chr17:7078802-7078802|G/A|missense_variant CLEC10A|p.T4M|1|0.23|ENSG00000132514|chr17:7078802-7078802|G/A|missense_variant CLEC10A|p.T4M|1|0.23|ENSG00000132514|chr17:7078802-7078802|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5341796875 3 461.533774 1381.57949 NaN NaN NaN NaN NaN NaN NaN 92.281 1 88.356 87.856 88.856 -3.9251 0 0 0 2.8426 1 18071 18071 0.84494 0.81353 1 30653 574 20454 20466 30266 30266 -0.09603411802618211 MTRQIIRKLVE 11 Unmodified _MTRQIIRKLVE_ 0 0 0 REV__ENST00000323116.9_2_3:182637676-182637826:+|nuORF REV__ENST00000323116.9_2_3:182637676-182637826:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 693.91845703125 2 693.916121 1385.81769 NaN NaN NaN NaN NaN NaN NaN 167.97 1 163.18 162.68 163.68 -4.7898 0 0 0 0.22632 1 33924 33924 8.4443 5.372 1 + 30654 20565 20455 20467 30267 30267 0.14021316841967746 MTRSKVVR 8 Unmodified _MTRSKVVR_ 0 0 0 REV__ENST00000507447.1_1_5:54960464-54965471:-|nuORF REV__ENST00000507447.1_1_5:54960464-54965471:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 326.1944580078125 3 326.195533 975.564769 NaN NaN NaN NaN NaN NaN NaN 82.808 1 82.808 82.308 83.308 0 0 0 0 0.21486 1 16140 16140 6.7232 2.7788 1 + 30655 18537 20456 20468 30268 30268 0.0760092890220676 MTRSWVSI 8 Unmodified _MTRSWVSI_ 0 0 0 ENST00000257290.9_1_4:55162752-55162818:+|nuORF ENST00000257290.9_1_4:55162752-55162818:+|nuORF ENST00000257290.9_1_4:55162752-55162818:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25579833984375 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 113.43 1 109.16 108.66 109.66 -4.2725 0 0 0 0.21323 1 21844 21844 14.582 2.0501 1 30656 8262 20457 20469 30269 30269 0.005578448826440763 MTRYWPWWDMI 11 Unmodified _MTRYWPWWDMI_ 0 0 0 REV__ENST00000435844.3_2_20:18550009-18550057:+|nuORF REV__ENST00000435844.3_2_20:18550009-18550057:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 529.0291137695312 3 528.909064 1583.70536 NaN NaN NaN NaN NaN NaN NaN 171.14 1 166.35 165.85 166.85 -4.7898 0 0 0 0.22632 1 34776 34776 0.026206 0 1 + 30657 21662 20458 20470 30270 30270 -0.0631428022657019 MTSLQKEKL 9 Unmodified _MTSLQKEKL_ 0 0 0 REV__RPRD2|p.K249Sfs*6|1|0.36|ENSG00000163125|chr1:150446274-150446274|C/-|frameshift_variant REV__RPRD2|p.K249Sfs*6|1|0.36|ENSG00000163125|chr1:150446274-150446274|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2153015136719 3 359.870603 1076.58998 -0.64246 -0.0002312 0.74807 0.00026921 0.10561 3.8006E-05 360.205144711569 37.47 0.41537 35.001 34.772 35.188 -2.4688 17 11 2 0 0 0 0.78802 1 6883 6883 2.2828 0 1 731650 + 30658 17551 20459 20471 30271 30271 0.05474938914107952 MTTSINRR 8 Unmodified _MTTSINRR_ 0 0 0 nc|ENSG00000167770|Q96FW1-2|OTUB1 nc|ENSG00000167770|Q96FW1-2|OTUB1 nc|ENSG00000167770|Q96FW1-2|OTUB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27587890625 2 489.761101 977.507648 0.40735 0.0001995 2.7776 0.0013604 3.185 0.0015599 489.76304436042204 103.73 0.10573 99.678 99.592 99.698 -4.0543 4 2 2 0 0 0 0.60622 1 19934 19934 21.747 3.6117 1 351480 30659 12447 20460 20472 30272 30272 0.017994616258192764 MTVKVSVR 8 Unmodified _MTVKVSVR_ 0 0 0 REV__ENST00000529943.6_1_16:31765215-31765368:+|nuORF REV__ENST00000529943.6_1_16:31765215-31765368:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2384338378906 2 460.273312 918.532072 NaN NaN NaN NaN NaN NaN NaN 89.976 1 89.976 89.476 90.476 0 0 0 0 0.2373 1 17574 17574 0.25148 0 1 + 30660 22749 20461 20473 30273 30273 0.06954721779356987 MTWCPLKA 8 Unmodified _MTWCPLKA_ 0 0 0 ENST00000509785.5_1_5:169014331-169015436:+|nuORF ENST00000509785.5_1_5:169014331-169015436:+|nuORF ENST00000509785.5_1_5:169014331-169015436:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1593322753906 3 317.15932 948.45613 NaN NaN NaN NaN NaN NaN NaN 92.499 1 88.405 87.905 88.905 -4.0946 0 0 0 0.21486 1 17622 17622 1.6526 0 1 30661 10736 20462 20474 30274 30274 -0.020159983924372682 MVAQAPPSE 9 Unmodified _MVAQAPPSE_ 0 0 0 REV__LZTS2|p.S102Afs*41|4|0.28|ENSG00000107816|chr10:101002836-101002836|C/-|frameshift_variant REV__LZTS2|p.S102Afs*41|4|0.28|ENSG00000107816|chr10:101002836-101002836|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2504577636719 2 465.223485 928.432418 NaN NaN NaN NaN NaN NaN NaN 61.234 1 61.234 60.734 61.734 0 0 0 0 0.23508 1 11748 11748 12.532 2.4576 1 + 30662 23828 20463 20475 30275 30275 -0.03466140625266689 MVCMDRRG 8 Unmodified _MVCMDRRG_ 0 0 0 KCNQ5|p.R244C|1|0.11|ENSG00000185760|chr6:73077435-73077435|C/T|missense_variant KCNQ5|p.R244C|1|0.11|ENSG00000185760|chr6:73077435-73077435|C/T|missense_variant KCNQ5|p.R244C|1|0.11|ENSG00000185760|chr6:73077435-73077435|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1474609375 3 323.147197 966.419761 NaN NaN NaN NaN NaN NaN NaN 123.63 1 119.03 118.53 119.53 -4.5926 0 0 0 0.21486 1 23798 23798 0.45834 0 1 30663 11982 20464 20476 30276 30276 -0.06479198560793975 MVDHVTEV 8 Unmodified _MVDHVTEV_ 0 0 0 ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1 ENST00000602875.5_1_5:139930287-139937028:-|nuORF ENST00000602875.5_1_5:139930287-139937028:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2460021972656 2 465.223485 928.432418 0.44309 0.00020614 0.055312 2.5733E-05 0.49841 0.00023187 465.2234994816211 48.26 0.69766 48.26 47.858 48.556 0 35 19 2 0 0 0 0.13725 1 9106 9106 77.984 37.536 1 2150900 30664 7696 20465 20477 30277 30277 -0.03466140625266689 MVDHVTEV 8 Unmodified _MVDHVTEV_ 0 0 0 ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1 ENST00000602875.5_1_5:139930287-139937028:-|nuORF ENST00000602875.5_1_5:139930287-139937028:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2393798828125 2 465.223485 928.432418 -0.21557 -0.00010029 0.77328 0.00035975 0.5577 0.00025946 465.22380705944056 50.972 0.63452 48.089 47.786 48.42 -2.8824 32 17 2 0 0 0 0.077908 1 9673 9673 81.864 32.195 1 3235100 30665 7696 20465 20477 30278 30278 -0.03466140625266689 MVDHVTEV 8 Unmodified _MVDHVTEV_ 0 0 0 ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1 ENST00000602875.5_1_5:139930287-139937028:-|nuORF ENST00000602875.5_1_5:139930287-139937028:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2459411621094 2 465.223485 928.432418 0.0024409 1.1356E-06 0.49153 0.00022867 0.49397 0.00022981 465.22372817001724 51.192 0.77391 48.146 47.802 48.576 -3.0453 38 21 2 0 0 0 0.17597 1 9448 9448 63.563 23.114 1 2637400 30666 7696 20465 20477 30279 30279 -0.03466140625266689 MVDHVTEV 8 Unmodified _MVDHVTEV_ 0 0 0 ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1 ENST00000602875.5_1_5:139930287-139937028:-|nuORF ENST00000602875.5_1_5:139930287-139937028:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2450256347656 2 465.223485 928.432418 -0.061718 -2.8712E-05 0.68064 0.00031665 0.61893 0.00028794 465.22370030143986 51.178 0.7035 48.126 47.713 48.417 -3.0517 34 19 2 0 0 0 0.13725 1 9425 9425 89.427 39.758 1 2111600 30667 7696 20465 20477 30280 30280 -0.03466140625266689 MVDPLLTKY 9 Unmodified _MVDPLLTKY_ 0 0 0 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35 ENSG00000101452|ENST00000252011|DHX35 ENSG00000101452|ENST00000252011|DHX35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.271728515625 2 540.293911 1078.57327 0.28097 0.00015181 0.21789 0.00011772 0.49886 0.00026953 540.2939150532104 127.98 0.73403 127.98 127.61 128.35 0 51 20 3 0 0 0 0.18865 2 25277 25277;25321 38.615 19.358 1 10829000 30668 2070 20466 20478 30281;30282 30281 0.03712438028151155 MVDPLLTKY 9 Unmodified _MVDPLLTKY_ 0 0 0 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35 ENSG00000101452|ENST00000252011|DHX35 ENSG00000101452|ENST00000252011|DHX35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2593383789062 2 540.293911 1078.57327 0.13747 7.4276E-05 0.26842 0.00014503 0.40589 0.0002193 540.2939249450275 132.63 0.96062 127.78 127.28 128.24 -4.8527 74 26 4 0 0 0 0.17734 1 25508 25508 40.239 16.219 1 19769000 30669 2070 20466 20478 30283 30283 0.03712438028151155 MVDPLLTKY 9 Unmodified _MVDPLLTKY_ 0 0 0 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35 ENSG00000101452|ENST00000252011|DHX35 ENSG00000101452|ENST00000252011|DHX35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2612915039062 2 540.293911 1078.57327 0.27433 0.00014822 -0.1349 -7.2886E-05 0.13943 7.5334E-05 540.2938018271549 132.57 0.86591 127.77 127.35 128.22 -4.799 64 24 3 0 0 0 0.21532 1 25578 25578 36.506 20.659 1 13860000 30670 2070 20466 20478 30284 30284 0.03712438028151155 MVDPLLTKY 9 Oxidation (M) _M(Oxidation (M))VDPLLTKY_ M(1)VDPLLTKY M(63)VDPLLTKY 0 0 1 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35 ENSG00000101452|ENST00000252011|DHX35 ENSG00000101452|ENST00000252011|DHX35 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7921752929688 2 548.291368 1094.56818 -0.29642 -0.00016252 0.50111 0.00027475 0.20469 0.00011223 548.2915922634415 107.9 0.80018 103.58 103.14 103.94 -4.32 61 22 4 0 0 0 0.14836 1 21243 21243 63.227 32.591 1 11025000 30671 2070 20466 20479 30285 30285 23 0.024681341655195865 MVDPLLTKY 9 Oxidation (M) _M(Oxidation (M))VDPLLTKY_ M(1)VDPLLTKY M(55)VDPLLTKY 0 0 1 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35 ENSG00000101452|ENST00000252011|DHX35 ENSG00000101452|ENST00000252011|DHX35 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.792724609375 2 548.291368 1094.56818 -0.051842 -2.8425E-05 0.34212 0.00018758 0.29028 0.00015916 548.2917069777577 107.94 0.89526 103.52 103.09 103.99 -4.4121 51 25 3 0 0 0 0.25795 1 20671 20671 55.235 43.74 1 8880400 30672 2070 20466 20479 30286 30286 23 0.024681341655195865 MVDPLLTKY 9 Oxidation (M) _M(Oxidation (M))VDPLLTKY_ M(1)VDPLLTKY M(65)VDPLLTKY 0 0 1 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35 ENSG00000101452|ENST00000252011|DHX35 ENSG00000101452|ENST00000252011|DHX35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.79052734375 2 548.291368 1094.56818 0.76875 0.0004215 -0.44801 -0.00024564 0.32074 0.00017586 548.2910951433861 107.74 0.86886 103.61 103.11 103.98 -4.135 63 24 5 0 0 0 0.066912 2 20661 20661;20708 65.474 38.59 1 12833000 30673 2070 20466 20479 30287;30288 30287 23 0.024681341655195865 MVEAISWRRL 10 Unmodified _MVEAISWRRL_ 0 0 0 REV__ENST00000521443.1_1_8:125463141-125474348:+|nuORF REV__ENST00000521443.1_1_8:125463141-125474348:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7716674804688 2 630.847707 1259.68086 0.54678 0.00034494 4.0102 0.0025298 4.5569 0.0028747 630.8512837555941 122.37 0.14313 117.84 117.76 117.9 -4.5305 5 3 2 0 0 0 1.1323 1 23568 23568 0.26539 0.093389 1 467640 + 30674 22646 20467 20480 30289 30289 0.06140827682247618 MVEKLNEV 8 Unmodified _MVEKLNEV_ 0 0 0 tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1 tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1 tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2546691894531 2 481.254785 960.495018 -0.34237 -0.00016477 -0.31459 -0.0001514 -0.65696 -0.00031616 481.2547275783767 110.26 0.24647 105.88 105.72 105.96 -4.3776 9 6 2 0 0 0 0.68128 1 21719 21719 16.942 0 1 1020000 30675 26010 20468 20481 30290 30290 0.013190054429287557 MVETAAEMEAY 11 Unmodified _MVETAAEMEAY_ 0 0 0 nc|ENSG00000132466|O75179-7|ANKRD17;ENST00000559367.1_1_4:74034679-74088744:-|nuORF nc|ENSG00000132466|O75179-7|ANKRD17 nc|ENSG00000132466|O75179-7|ANKRD17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7706909179688 2 622.762314 1243.51008 NaN NaN NaN NaN NaN NaN NaN 106.04 1 106.04 105.54 106.54 0 0 0 0 0.22632 1 20843 20843 0.172 0 1 30676 12326 20469 20482 30291 30291 -0.10193915542026843 MVFSAVYI 8 Unmodified _MVFSAVYI_ 0 0 0 ST6GALNAC4|p.V15M|1|0.45|ENSG00000136840|chr9:127914811-127914811|C/T|missense_variant ST6GALNAC4|p.V15M|1|0.45|ENSG00000136840|chr9:127914811-127914811|C/T|missense_variant ST6GALNAC4|p.V15M|1|0.45|ENSG00000136840|chr9:127914811-127914811|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2418212890625 2 465.243689 928.472826 NaN NaN NaN NaN NaN NaN NaN 60.035 1 60.035 59.535 60.535 0 0 0 0 0.22934 1 11508 11508 0.62683 0.37535 1 30677 25793 20470 20483 30292 30292 0.005728257651526292 MVGVGGCP 8 Unmodified _MVGVGGCP_ 0 0 0 ENST00000222329.8_1_19:42752311-42752452:-|nuORF ENST00000222329.8_1_19:42752311-42752452:-|nuORF ENST00000222329.8_1_19:42752311-42752452:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 130.58 1 130.58 130.08 131.08 0 0 0 0 0.21486 1 25810 25810 2.8892 2.0956 1 30678 8133 20471 20484 30293 30293 -0.056207914147762494 MVGVIGQA 8 Unmodified _MVGVIGQA_ 0 0 0 REV__ENST00000445466.2_1_3:151986600-151987317:-|nuORF REV__ENST00000445466.2_1_3:151986600-151987317:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7125244140625 2 387.712556 773.41056 -0.039003 -1.5122E-05 0.27704 0.00010741 0.23804 9.2289E-05 387.71258231601615 32.286 0.78275 30.056 29.724 30.507 -2.2305 54 21 3 0 0 0 8448 1 5882 5882 0.063987 0 1 3587300 + 30679 21750 20472 20485 30294 30294 0.014790994168379257 MVGVIGQA 8 Unmodified _MVGVIGQA_ 0 0 0 REV__ENST00000445466.2_1_3:151986600-151987317:-|nuORF REV__ENST00000445466.2_1_3:151986600-151987317:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7127380371094 2 387.712556 773.41056 -0.18287 -7.0902E-05 0.2635 0.00010216 0.080624 3.1259E-05 387.71265209804034 32.267 0.83207 30.119 29.795 30.627 -2.1483 52 23 4 0 0 0 0.83271 1 5540 5540 2.8892 0 1 2915400 + 30680 21750 20472 20485 30295 30295 0.014790994168379257 MVHTACKDLY 10 Unmodified _MVHTACKDLY_ 0 0 0 nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH;ENST00000498255.6_1_13:42728006-42769963:+|nuORF nc|ENSG00000102780|Q86XP1-5|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2508544921875 2 590.778102 1179.54165 0.35565 0.00021011 -0.78627 -0.00046451 -0.43062 -0.0002544 590.777757163329 72.397 0.35883 69.086 69.025 69.384 -3.3107 10 9 2 0 0 0 0.87854 1 14146 14146 13.906 5.1606 1 1659900 30681 2144 20473 20486 30296 30296 -0.04093877997433992 MVKIPPQL 8 Unmodified _MVKIPPQL_ 0 0 0 REV__USH2A|p.F1618Lfs*17|1|0.36|ENSG00000042781|chr1:216089044-216089044|A/-|frameshift_variant;REV__USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant REV__USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 309.1907043457031 3 309.189496 924.546659 NaN NaN NaN NaN NaN NaN NaN 92.756 1 92.756 92.256 93.256 0 0 0 0 0.21486 1 18137 18137 0.40072 0 1 + 30682 25523;25522 20474 20487 30297 30297 0.08136793927474173 MVKKEPIK 8 Unmodified _MVKKEPIK_ 0 0 0 ZNF354C|p.S114P|1|0.28|ENSG00000177932|chr5:179078772-179078772|T/C|missense_variant ZNF354C|p.S114P|1|0.28|ENSG00000177932|chr5:179078772-179078772|T/C|missense_variant ZNF354C|p.S114P|1|0.28|ENSG00000177932|chr5:179078772-179078772|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.8238830566406 3 324.868534 971.583773 NaN NaN NaN NaN NaN NaN NaN 35.11 1 32.857 32.357 33.357 -2.2527 0 0 0 0.21486 1 6177 6177 0.45834 0 1 30683 26615 20475 20488 30298 30298 0.09684465473242199 MVKKKRFK 8 Unmodified _MVKKKRFK_ 0 0 0 REV__ENST00000378230.7_1_1:3743286-3745840:-|nuORF REV__ENST00000378230.7_1_1:3743286-3745840:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 532.8545532226562 2 532.841697 1063.66884 NaN NaN NaN NaN NaN NaN NaN 11.177 1 10.273 9.7729 10.773 -0.90401 0 0 0 0.2396 1 1460 1460 0 0 1 + 30684 21109 20476 20489 30299 30299 0.1395525572970655 MVKRRNFK 8 Unmodified _MVKRRNFK_ 0 0 0 REV__ENST00000543528.1_1_12:19566340-19566391:+|nuORF REV__ENST00000543528.1_1_12:19566340-19566391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2156677246094 3 360.214927 1077.62295 NaN NaN NaN NaN NaN NaN NaN 145.77 1 141.09 140.59 141.59 -4.6868 0 0 0 0.21486 1 28899 28899 1.8442 0.19162 1 + 30685 14966 20477 20490 30300 30300 0.0872461054748328 MVKTTIIT 8 Unmodified _MVKTTIIT_ 0 0 0 REV__HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant REV__HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7687072753906 2 453.770071 905.52559 NaN NaN NaN NaN NaN NaN NaN 25.79 1 24.155 23.655 24.655 -1.6347 0 0 0 0.21486 1 4254 4254 8.5933 2.8329 1 + 30686 18291 20478 20491 30301 30301 0.06904783827963001 MVKVKRTRRFY 11 Unmodified _MVKVKRTRRFY_ 0 0 0 REV__ENST00000497028.5_1_10:46147461-46159236:-|nuORF REV__ENST00000497028.5_1_10:46147461-46159236:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3889770507812 2 742.437555 1482.86056 NaN NaN NaN NaN NaN NaN NaN 159.12 1 153.85 153.35 154.35 -5.2748 0 0 0 0.22632 1 30884 30884 0.026206 0 1 + 30687 20653 20479 20492 30302 30302 0.13844131690029826 MVLVLLVLL 9 Unmodified _MVLVLLVLL_ 0 0 0 REV__ENST00000462116.5_1_1:155032691-155033592:+|nuORF REV__ENST00000462116.5_1_1:155032691-155033592:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 506.7981262207031 2 506.845582 1011.67661 -0.26242 -0.00013301 2.4378 0.0012356 2.1754 0.0011026 507.3470319895764 139.85 0.17075 134.9 134.81 134.98 -4.952 5 4 2 0 0 0 0.42933 1 26892 26892 0.40827 0 1 1057400 + 30688 12938 20480 20493 30303 30303 0.17123970206625927 MVMFFIMVFAH 11 Unmodified _MVMFFIMVFAH_ 0 0 0 REV__ENSG00000198804|ENST00000361624|MT-CO1 REV__ENSG00000198804|ENST00000361624|MT-CO1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2254638671875 3 458.225336 1371.65418 NaN NaN NaN NaN NaN NaN NaN 30.717 1 28.6 28.1 29.1 -2.1167 0 0 0 0.22632 1 5558 5558 8.4443 8.3333 1 + 30689 19453 20481 20494 30304 30304 -0.01678320524956689 MVMPVGQFTIG 11 Unmodified _MVMPVGQFTIG_ 0 0 0 REV__ENSG00000180532|ENST00000318203|ZSCAN4 REV__ENSG00000180532|ENST00000318203|ZSCAN4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.247802734375 2 590.29867 1178.58279 NaN NaN NaN NaN NaN NaN NaN 110.26 1 110.26 109.76 110.76 0 0 0 0 0.21688 1 21685 21685 14.838 0.93222 1 + 30690 18693 20482 20495 30305 30305 0.0006388304202573636 MVNMPRGIY 9 Unmodified _MVNMPRGIY_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD;ENST00000603552.1_1_9:20881907-20885147:+|nuORF ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2835693359375 2 540.77008 1079.52561 0.2724 0.0001473 -0.15792 -8.5397E-05 0.11448 6.1906E-05 540.7703392524214 132.16 0.57677 127.36 127.08 127.66 -4.799 24 16 2 0 0 0 0.52414 1 25453 25453 18.135 1.1927 1 2106900 30691 7167 20483 20496 30306 30306 -0.010975394436627539 MVPAPPGS 8 Unmodified _MVPAPPGS_ 0 0 0 TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant;ENSG00000119283|ENST00000366653|TRIM67;nc|ENSG00000119283|Q6ZTA4-2|TRIM67 TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.1751708984375 2 378.191457 754.368361 NaN NaN NaN NaN NaN NaN NaN 69.836 1 66.656 66.156 67.156 -3.1796 0 0 0 0.23664 1 13583 13583 3.2813 0 1 30692 3065 20484 20497 30307 30307 -0.01864875991543613 MVPLNMYI 8 Unmodified _MVPLNMYI_ 0 0 0 ENSG00000146409|ENST00000275227|SLC18B1 ENSG00000146409|ENST00000275227|SLC18B1 ENSG00000146409|ENST00000275227|SLC18B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.264892578125 2 490.750824 979.487096 0.4264 0.00020926 -0.99321 -0.00048742 -0.56681 -0.00027816 490.7502632226344 125.15 1.1203 120.39 119.99 121.11 -4.7681 68 31 3 0 0 0 8448 1 24119 24119 1.7423 0 1 12555000 30693 4651 20485 20498 30308 30308 -0.003468450781952015 MVPYNVSF 8 Unmodified _MVPYNVSF_ 0 0 0 ENST00000394964.3_1_14:63416779-63568536:-|nuORF;nc|ENSG00000140015|Q8NCM2-2|KCNH5;nc|ENSG00000140015|Q8NCM2-3|KCNH5;ENSG00000140015|ENST00000322893|KCNH5 ENST00000394964.3_1_14:63416779-63568536:-|nuORF ENST00000394964.3_1_14:63416779-63568536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73284912109375 2 478.730946 955.447339 NaN NaN NaN NaN NaN NaN NaN 143.8 1 139.15 138.65 139.65 -4.656 0 0 0 0.23664 1 28455 28455 3.2813 2.6545 1 30694 4278 20486 20499 30309 30309 -0.03216648757256735 MVRAPNDL 8 Unmodified _MVRAPNDL_ 0 0 0 REV__nc|ENSG00000173692|Q99460-2|PSMD1 REV__nc|ENSG00000173692|Q99460-2|PSMD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2403564453125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 150.85 1 150.85 150.35 151.35 0 0 0 0 0.21486 1 30205 30205 7.9102 0 1 + 30695 18368 20487 20500 30310 30310 0.003732718485366604 MVRNNRVRWFW 11 Unmodified _MVRNNRVRWFW_ 0 0 0 REV__nc|ENSG00000156103|P51512-2|MMP16 REV__nc|ENSG00000156103|P51512-2|MMP16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2632446289062 3 521.941978 1562.8041 -0.55261 -0.00028843 2.4398 0.0012734 1.8872 0.00098501 521.9429213628425 159.27 0.10773 154 153.94 154.05 -5.2748 4 2 2 0 0 0 0.66087 1 30919 30919 1.4551 1.4289 1 1042200 + 30696 17245 20488 20501 30311 30311 0.045215038533569896 MVRWLRAY 8 Unmodified _MVRWLRAY_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7919311523438 2 547.800029 1093.5855 NaN NaN NaN NaN NaN NaN NaN 152.42 1 147.67 147.17 148.17 -4.7523 0 0 0 0.21323 1 30289 30289 14.582 1.5392 1 30697 2123 20489 20502 30312 30312 0.04245519281880661 MVSAIGNDGP 10 Unmodified _MVSAIGNDGP_ 0 0 0 ENST00000565863.1_1_16:84109176-84124517:-|nuORF;MBTPS1|p.F682Sfs*13|2|0.12|ENSG00000140943|chr16:84068367-84068367|G/-|frameshift_variant;ENSG00000140943|ENST00000343411|MBTPS1 ENST00000565863.1_1_16:84109176-84124517:-|nuORF ENST00000565863.1_1_16:84109176-84124517:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25439453125 2 480.726392 959.438231 0.21505 0.00010338 -0.52993 -0.00025475 -0.31489 -0.00015137 480.72630508107915 49.664 0.59249 49.664 49.232 49.825 0 25 16 2 0 0 0 0.79872 1 9334 9334 19.257 8.4331 1 828880 30698 4333 20490 20503 30313 30313 -0.04311042113579333 MVSGPNRF 8 Unmodified _MVSGPNRF_ 0 0 0 REV__ENST00000566288.1_1_15:42040980-42042834:+|nuORF REV__ENST00000566288.1_1_15:42040980-42042834:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7542724609375 2 454.226362 906.438172 NaN NaN NaN NaN NaN NaN NaN 119.7 1 115.23 114.73 115.73 -4.467 0 0 0 0.23366 1 23044 23044 0.62683 0.50396 1 + 30699 18398 20491 20504 30314 30314 -0.018789973229331736 MVTELDHLS 9 Unmodified _MVTELDHLS_ 0 0 0 REV__ENST00000506027.1_1_8:130742439-130742688:+|nuORF REV__ENST00000506027.1_1_8:130742439-130742688:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6981201171875 2 522.755149 1043.49575 -0.17579 -9.1895E-05 -0.093424 -4.8838E-05 -0.26921 -0.00014073 522.755142146011 99.426 0.76089 95.294 94.925 95.685 -4.1326 58 21 3 0 0 0 0.54354 1 19476 19476 16.942 4.4107 1 18052000 + 30700 22485 20492 20505 30315 30315 -0.02426199908018134 MVTPTPPPT 9 Unmodified _MVTPTPPPT_ 0 0 0 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.3137512207031 3 314.165128 939.473554 NaN NaN NaN NaN NaN NaN NaN 44.115 1 41.368 40.868 41.868 -2.7475 0 0 0 0.23508 1 7978 7978 1.0715 0.3738 1 30701 12553 20493 20506 30316 30316 0.0013962041419972593 MVVEPNLQ 8 Unmodified _MVVEPNLQ_ 0 0 0 ENSG00000151779|ENST00000281513|NBAS;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant ENSG00000151779|ENST00000281513|NBAS ENSG00000151779|ENST00000281513|NBAS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2413635253906 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 63.466 1 60.05 59.55 60.55 -3.4158 0 0 0 0.20896 1 11855 11855 18.135 0 1 30702 4887 20494 20507 30317 30317 0.001707362714341798 MVVKKKKK 8 Unmodified _MVVKKKKK_ 0 0 0 ENST00000377474.3_1_13:77455936-77455996:-|nuORF ENST00000377474.3_1_13:77455936-77455996:-|nuORF ENST00000377474.3_1_13:77455936-77455996:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 330.22662353515625 3 330.228174 987.662692 NaN NaN NaN NaN NaN NaN NaN 76.839 1 73.424 72.924 73.924 -3.4151 0 0 0 0.21486 1 14997 14997 0.45834 0 1 30703 9264 20495 20508 30318 30318 0.16836737498192633 MWFLSLRPFWW 11 Unmodified _MWFLSLRPFWW_ 0 0 0 REV__ENST00000486187.5_1_10:43090126-43133998:-|nuORF REV__ENST00000486187.5_1_10:43090126-43133998:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6769409179688 3 523.600559 1567.77985 NaN NaN NaN NaN NaN NaN NaN 176.24 1 176.24 175.74 176.74 0 0 0 0 0.23698 1 36510 36510 0 0 1 + 30704 22233 20496 20509 30319 30319 0.018668506471385626 MWFLSLRPFWW 11 Unmodified _MWFLSLRPFWW_ 0 0 0 REV__ENST00000486187.5_1_10:43090126-43133998:-|nuORF REV__ENST00000486187.5_1_10:43090126-43133998:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6860961914062 3 523.600559 1567.77985 NaN NaN NaN NaN NaN NaN NaN 177.07 1 177.07 176.57 177.57 0 0 0 0 0.23698 1 36680 36680 0 0 1 + 30705 22233 20496 20509 30320 30320 0.018668506471385626 MWWVCFWHWE 10 Unmodified _MWWVCFWHWE_ 0 0 0 CLN8|p.D220E|1|0.28|ENSG00000182372|chr8:1780366-1780366|C/G|missense_variant CLN8|p.D220E|1|0.28|ENSG00000182372|chr8:1780366-1780366|C/G|missense_variant CLN8|p.D220E|1|0.28|ENSG00000182372|chr8:1780366-1780366|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 504.2293395996094 3 503.879216 1508.61582 NaN NaN NaN NaN NaN NaN NaN 126 1 126 125.5 126.5 0 0 0 0 2.8426 1 24863 24863 0.69767 0.11235 1 30706 583 20497 20510 30321 30321 -0.11814490115261833 MYEGVLHL 8 Unmodified _MYEGVLHL_ 0 0 0 REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24560546875 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 78.447 1 74.983 74.483 75.483 -3.4633 0 0 0 0.22934 1 15318 15318 1.7423 0 1 + 30707 22510 20498 20511 30322 30322 -0.007929598659416115 MYEGVLHL 8 Unmodified _MYEGVLHL_ 0 0 0 REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24224853515625 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 175.55 1 170.76 170.26 171.26 -4.7898 0 0 0 0.21486 1 35893 35893 2.5775 0 1 + 30708 22510 20498 20511 30323 30323 -0.007929598659416115 MYEGVLHL 8 Unmodified _MYEGVLHL_ 0 0 0 REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24261474609375 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 175.8 1 170.9 170.4 171.4 -4.9008 0 0 0 0.21486 1 35041 35041 2.5775 0 1 + 30709 22510 20498 20511 30324 30324 -0.007929598659416115 MYFEDFYYYDN 11 Unmodified _MYFEDFYYYDN_ 0 0 0 REV__tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1 REV__tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3819580078125 2 785.297575 1568.5806 NaN NaN NaN NaN NaN NaN NaN 96.246 1 92.011 91.511 92.511 -4.2348 0 0 0 0.22632 1 18375 18375 0 0 1 + 30710 24972 20499 20512 30325 30325 -0.18094918952715489 MYFFFPDLFP 10 Unmodified _MYFFFPDLFP_ 0 0 0 ENST00000378119.8_1_6:24705648-24705762:-|nuORF ENST00000378119.8_1_6:24705648-24705762:-|nuORF ENST00000378119.8_1_6:24705648-24705762:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 441.8838806152344 3 441.875466 1322.60457 NaN NaN NaN NaN NaN NaN NaN 9.575 1 8.5403 8.0403 9.0403 -1.0347 0 0 0 0.22588 1 987 987 0.15932 0 1 30711 9275 20500 20513 30326 30326 -0.04382988937754817 MYFQQYWRDKR 11 Unmodified _MYFQQYWRDKR_ 0 0 0 GABRB3|p.L170Wfs*66|1|0.1|ENSG00000166206|chr15:26583368-26583368|G/-|frameshift_variant;nc|ENSG00000166206|P28472-4|GABRB3;nc|ENSG00000166206|P28472-3|GABRB3;nc|ENSG00000166206|P28472-2|GABRB3;ENSG00000166206|ENST00000311550|GABRB3 GABRB3|p.L170Wfs*66|1|0.1|ENSG00000166206|chr15:26583368-26583368|G/-|frameshift_variant GABRB3|p.L170Wfs*66|1|0.1|ENSG00000166206|chr15:26583368-26583368|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.263916015625 3 540.929515 1619.76672 0.46502 0.00025154 -1.0392 -0.00056213 -0.57417 -0.00031058 540.9276014281793 153.53 0.16936 148.31 148.21 148.38 -5.2209 7 4 2 0 0 0 0.66087 1 29770 29770 1.4551 0.94916 1 1641000 30712 5702 20501 20514 30327 30327 -0.018376322029098446 MYLWVVRWKWC 11 Unmodified _MYLWVVRWKWC_ 0 0 0 ENST00000254644.12_1_2:86439609-86439759:+|nuORF ENST00000254644.12_1_2:86439609-86439759:+|nuORF ENST00000254644.12_1_2:86439609-86439759:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3963623046875 2 785.39651 1568.77847 NaN NaN NaN NaN NaN NaN NaN 128.21 1 123.39 122.89 123.89 -4.817 0 0 0 0.22632 1 24616 24616 0.00056442 0 1 30713 8245 20502 20515 30328 30328 0.016828932867383628 MYLWVVRWKWC 11 Unmodified _MYLWVVRWKWC_ 0 0 0 ENST00000254644.12_1_2:86439609-86439759:+|nuORF ENST00000254644.12_1_2:86439609-86439759:+|nuORF ENST00000254644.12_1_2:86439609-86439759:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3977661132812 2 785.39651 1568.77847 NaN NaN NaN NaN NaN NaN NaN 121.48 1 116.95 116.45 117.45 -4.5305 0 0 0 0.22632 1 23389 23389 0.0059557 0 1 30714 8245 20502 20515 30329 30329 0.016828932867383628 MYNIIKVY 8 Unmodified _MYNIIKVY_ 0 0 0 REV__GPR141|p.F230Lfs*2|2|0.37|ENSG00000187037|chr7:37741078-37741078|T/-|frameshift_variant REV__GPR141|p.F230Lfs*2|2|0.37|ENSG00000187037|chr7:37741078-37741078|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26708984375 2 522.283346 1042.55214 NaN NaN NaN NaN NaN NaN NaN 143.4 1 138.37 137.87 138.87 -5.0261 0 0 0 0.23025 1 27646 27646 0.68139 0.27313 1 + 30715 19073 20503 20516 30330 30330 0.03256472719317571 MYQEAIKVVY 10 Unmodified _MYQEAIKVVY_ 0 0 0 ENST00000331113.8_1_7:120381633-120387745:+|nuORF;KCND2|p.T537Lfs*40|1|0.42|ENSG00000184408|chr7:120745915-120745915|A/-|frameshift_variant ENST00000331113.8_1_7:120381633-120387745:+|nuORF ENST00000331113.8_1_7:120381633-120387745:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7665405273438 2 622.323199 1242.63185 0.97932 0.00060945 1.8777 0.0011685 2.857 0.001778 622.324759690419 115.36 0.44472 110.89 110.67 111.12 -4.4726 14 12 2 0 0 0 0.68961 2 22735 22735;22752 12.241 0 1 1807000 30716 8775 20504 20517 30331;30332 30331 0.020234946026221223 MYSVLQDPI 9 Unmodified _MYSVLQDPI_ 0 0 0 REV__ENSG00000124772|ENST00000244751|CPNE5 REV__ENSG00000124772|ENST00000244751|CPNE5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2691040039062 2 533.267893 1064.52123 0.1038 5.5353E-05 1.5695 0.00083696 1.6733 0.00089231 533.7697506293931 122.35 0.64645 122.35 121.93 122.57 0 37 18 3 0 0 0 0.17935 2 24103 24073;24103 39.95 9.3132 1 3329000 + 30717 15793 20505 20518 30333;30334 30334 -0.008447253855820236 NACYSTTY 8 Unmodified _NACYSTTY_ 0 0 0 tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1 tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1 tr|U7STY0|U7STY0_FUSNU4-hydroxybutyryl-CoAdehydratase/vinylacetyl-CoA-Delta-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01228PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.52374267578125 2 461.684193 921.353833 NaN NaN NaN NaN NaN NaN NaN 69.589 1 66.41 65.91 66.91 -3.1796 0 0 0 0.21171 1 13530 13530 15.847 1.2655 1 30718 26174 20506 20519 30335 30335 -0.10998992930365148 NADDIVGME 9 Unmodified _NADDIVGME_ 0 0 0 ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL ENSG00000162924|ENST00000394479|REL ENSG00000162924|ENST00000394479|REL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7733459472656 2 482.208032 962.401511 0.03982 1.9201E-05 -0.42986 -0.00020728 -0.39004 -0.00018808 482.20791920712486 31.291 1.0156 31.291 30.725 31.741 0 47 28 2 0 0 0 0.38406 1 5567 5567 0.40827 0 1 1082200 30719 5383 20507 20520 30336 30336 -0.08119338730148229 NADGKIISL 9 Unmodified _NADGKIISL_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2579040527344 2 465.766374 929.518196 0.13535 6.3041E-05 0.021122 9.8378E-06 0.15647 7.2879E-05 465.76638902615827 94.778 0.735 90.586 90.09 90.825 -4.1911 34 20 2 0 0 0 0.27332 1 18030 18030 51.63 3.8811 1 3307100 30720 4024 20508 20521 30337 30337 0.05061767551910634 NADGKIISL 9 Unmodified _NADGKIISL_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2585144042969 2 465.766374 929.518196 0.026586 1.2383E-05 -0.061513 -2.8651E-05 -0.034928 -1.6268E-05 465.7663931756248 94.471 0.69092 90.627 90.296 90.987 -3.844 34 19 2 0 0 0 0.39339 1 18119 18119 36.506 7.4246 1 3596900 30721 4024 20508 20521 30338 30338 0.05061767551910634 NADGKIISL 9 Unmodified _NADGKIISL_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 465.766374 929.518196 -0.036741 -1.7113E-05 0.19538 9.1002E-05 0.15864 7.3889E-05 465.7664182245567 94.577 0.73031 90.586 90.142 90.873 -3.9907 -0.013854 0.00014966 NaN 51.63 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 4011900 30722 4024 20508 20521 0.05061767551910634 NADIAVVEM 9 Unmodified _NADIAVVEM_ 0 0 0 MAP3K5|p.A1077Lfs*6|1|0.27|ENSG00000197442|chr6:136583737-136583737|C/-|frameshift_variant;MAP3K5|p.F1132Wfs*8|1|0.09|ENSG00000197442|chr6:136583570-136583571|AA/-|frameshift_variant;ENSG00000197442|ENST00000359015|MAP3K5;MAP3K5|p.K421Rfs*37|1|0.38|ENSG00000197442|chr6:136669387-136669387|T/-|frameshift_variant MAP3K5|p.A1077Lfs*6|1|0.27|ENSG00000197442|chr6:136583737-136583737|C/-|frameshift_variant MAP3K5|p.A1077Lfs*6|1|0.27|ENSG00000197442|chr6:136583737-136583737|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2361145019531 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 30.973 1 30.973 30.473 31.473 0 0 0 0 0.18705 1 5579 5579 25.399 5.9603 1 30723 7366 20509 20522 30339 30339 -0.023178714537721135 NADIAVVEM 9 Unmodified _NADIAVVEM_ 0 0 0 MAP3K5|p.A1077Lfs*6|1|0.27|ENSG00000197442|chr6:136583737-136583737|C/-|frameshift_variant;MAP3K5|p.F1132Wfs*8|1|0.09|ENSG00000197442|chr6:136583570-136583571|AA/-|frameshift_variant;ENSG00000197442|ENST00000359015|MAP3K5;MAP3K5|p.K421Rfs*37|1|0.38|ENSG00000197442|chr6:136669387-136669387|T/-|frameshift_variant MAP3K5|p.A1077Lfs*6|1|0.27|ENSG00000197442|chr6:136583737-136583737|C/-|frameshift_variant MAP3K5|p.A1077Lfs*6|1|0.27|ENSG00000197442|chr6:136583737-136583737|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23663330078125 2 481.236593 960.458632 0.14098 6.7843E-05 -0.15715 -7.5627E-05 -0.016173 -7.7831E-06 481.2365003535211 32.767 0.69718 30.537 30.259 30.956 -2.2305 22 19 2 0 0 0 0.46541 2 6045 6045;6058 21.747 4.8044 1 569530 30724 7366 20509 20522 30340;30341 30340 -0.023178714537721135 NADVLISAVG 10 Unmodified _NADVLISAVG_ 0 0 0 tr|U7T3B7|U7T3B7_FUSNUBifunctionalproteinFolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=folDPE=3SV=1 tr|U7T3B7|U7T3B7_FUSNUBifunctionalproteinFolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=folDPE=3SV=1 tr|U7T3B7|U7T3B7_FUSNUBifunctionalproteinFolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=folDPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2508544921875 2 479.763832 957.513111 0.22433 0.00010763 -0.46048 -0.00022092 -0.23615 -0.0001133 479.7635308414876 33.771 0.9398 31.624 30.902 31.841 -2.1468 61 26 4 0 0 0 0.6817 1 5860 5860 13.042 1.4022 1 18764000 30725 26387 20510 20523 30342 30342 0.03265463689297121 NADVPVVRGKP 11 Unmodified _NADVPVVRGKP_ 0 0 0 ENSG00000131773|ENST00000355849|KHDRBS3;ENST00000522079.5_1_8:136569738-136660819:+|nuORF;nc|ENSG00000131773|O75525-2|KHDRBS3 ENSG00000131773|ENST00000355849|KHDRBS3 ENSG00000131773|ENST00000355849|KHDRBS3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3317260742188 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 30.945 1 30.945 30.445 31.445 0 0 0 0 0.23379 1 5574 5574 5.2969 0.54088 1 30726 3693 20511 20524 30343 30343 0.0765590814596635 NADVVSQLL 9 Unmodified _NADVVSQLL_ 0 0 0 REV__ENST00000514430.5_1_4:103590092-103612100:-|nuORF REV__ENST00000514430.5_1_4:103590092-103612100:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.242919921875 2 479.763832 957.513111 0.36073 0.00017307 -0.55979 -0.00026857 -0.19906 -9.5504E-05 479.7634673888791 33.804 0.97134 31.588 30.874 31.846 -2.2158 61 27 4 0 0 0 0.57447 1 5886 5886 14.838 1.7958 1 14504000 + 30727 15159 20512 20525 30344 30344 0.0326546368930849 NADVVSQLL 9 Unmodified _NADVVSQLL_ 0 0 0 REV__ENST00000514430.5_1_4:103590092-103612100:-|nuORF REV__ENST00000514430.5_1_4:103590092-103612100:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.763832 957.513111 -0.032262 -1.5478E-05 -0.16387 -7.8619E-05 -0.19613 -9.4097E-05 479.7636302351819 33.82 0.9687 31.503 30.798 31.767 -2.3175 -0.09073 0.00017489 NaN 14.838 57 27 4 NaN NaN NaN NaN 0 NaN NaN 0 15772000 + 30728 15159 20512 20525 0.0326546368930849 NAEIQFHIA 9 Unmodified _NAEIQFHIA_ 0 0 0 KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant;KDM6A|p.N634Tfs*57|1|0.26|ENSG00000147050|chrX:45063791-45063791|A/-|frameshift_variant;KDM6A|p.N906Mfs*31|1|0.53|ENSG00000147050|chrX:45076707-45076707|A/-|frameshift_variant;KDM6A|p.T1081Pfs*2|1|0.15|ENSG00000147050|chrX:45082743-45082743|A/-|frameshift_variant;nc|ENSG00000147050|O15550|KDM6A;ENSG00000147050|ENST00000611820|KDM6A;ENST00000474365.1_1_Y:15505723-15591217:-|nuORF;nc|ENSG00000183878|O14607|UTY;nc|ENSG00000183878|O14607-4|UTY;ENSG00000183878|ENST00000545955|UTY;nc|ENSG00000183878|O14607-2|UTY;nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-3|UTY KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant;nc|ENSG00000183878|O14607|UTY nc|ENSG00000183878|O14607|UTY MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2617797851562 2 521.769448 1041.52434 0.41528 0.00021668 0.025837 1.3481E-05 0.44112 0.00023016 521.768962626223 74.185 1.3708 70.591 69.758 71.129 -3.594 122 38 5 0 0 0 0.35556 1 14000 14000 12.241 0 1 14903000 30729 6878;4678 20513 20526 30345 30345 0.005242857834218739 NAGQIPLDE 9 Unmodified _NAGQIPLDE_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73760986328125 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 64.899 1 61.852 61.352 62.352 -3.047 0 0 0 0.12545 1 12554 12554 0.87518 0 1 30730 5117 20514 20527 30346 30346 -0.018436997244634767 NAGQIPLDE 9 Unmodified _NAGQIPLDE_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73760986328125 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 64.913 1 61.866 61.366 62.366 -3.047 0 0 0 0.1124 1 12557 12557 36.044 3.7387 1 30731 5117 20514 20527 30347 30347 -0.018436997244634767 NAHEFITSF 9 Unmodified _NAHEFITSF_ 0 0 0 ENST00000482899.1_1_7:150737654-150742433:+|nuORF;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8 ENST00000482899.1_1_7:150737654-150742433:+|nuORF ENST00000482899.1_1_7:150737654-150742433:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.28564453125 2 533.253631 1064.49271 0.097506 5.1995E-05 0.041795 2.2287E-05 0.1393 7.4282E-05 533.2537109600759 118.82 0.49344 118.82 118.57 119.07 0 30 13 3 0 0 0 0.045725 2 23428 23367;23428 72.968 33.011 1 2768800 30732 7336 20515 20528 30348;30349 30349 -0.036957069705295 NAHEFITSF 9 Unmodified _NAHEFITSF_ 0 0 0 ENST00000482899.1_1_7:150737654-150742433:+|nuORF;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8 ENST00000482899.1_1_7:150737654-150742433:+|nuORF ENST00000482899.1_1_7:150737654-150742433:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2740478515625 2 533.253631 1064.49271 0.26544 0.00014154 -0.062569 -3.3365E-05 0.20287 0.00010818 533.2535171887524 123.28 0.60654 118.71 118.38 118.99 -4.5757 32 16 2 0 0 0 0.41266 1 24243 24243 24.991 10.153 1 4979100 30733 7336 20515 20528 30350 30350 -0.036957069705295 NAHEFITSF 9 Unmodified _NAHEFITSF_ 0 0 0 ENST00000482899.1_1_7:150737654-150742433:+|nuORF;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8 ENST00000482899.1_1_7:150737654-150742433:+|nuORF ENST00000482899.1_1_7:150737654-150742433:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.265380859375 2 533.253631 1064.49271 0.83575 0.00044567 -0.63385 -0.000338 0.2019 0.00010766 533.2533124474761 123.45 0.74462 118.72 118.29 119.04 -4.731 33 20 2 0 0 0 0.019708 2 23722 23654;23722 92.653 46.632 1 4094300 30734 7336 20515 20528 30351;30352 30352 -0.036957069705295 NAHEFITSF 9 Unmodified _NAHEFITSF_ 0 0 0 ENST00000482899.1_1_7:150737654-150742433:+|nuORF;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8 ENST00000482899.1_1_7:150737654-150742433:+|nuORF ENST00000482899.1_1_7:150737654-150742433:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2635498046875 2 533.253631 1064.49271 0.33613 0.00017924 -0.20936 -0.00011164 0.12678 6.7604E-05 533.253453175334 123.26 0.65698 118.67 118.3 118.96 -4.5926 34 18 2 0 0 0 0.072372 2 23759 23744;23759 63.961 45.105 1 3919500 30735 7336 20515 20528 30353;30354 30354 -0.036957069705295 NAKAFSYK 8 Unmodified _NAKAFSYK_ 0 0 0 nc|ENSG00000274349|Q5TYW1-2|ZNF658;ZNF658|p.F1031Cfs*3|1|0.41|ENSG00000274349|chr9:66920656-66920657|TT/-|frameshift_variant;ENSG00000274349|ENST00000621410|ZNF658;ENST00000377618.4_9:39444499-39464431:-|nuORF nc|ENSG00000274349|Q5TYW1-2|ZNF658 nc|ENSG00000274349|Q5TYW1-2|ZNF658 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1255798339844 3 310.167749 927.481417 NaN NaN NaN NaN NaN NaN NaN 40.713 1 38.224 37.724 38.724 -2.4896 0 0 0 0.21486 1 7294 7294 6.7232 0 1 30736 8017 20516 20529 30355 30355 0.014775157260032756 NAKALRNK 8 Unmodified _NAKALRNK_ 0 0 0 nc|ENSG00000161513|P22570-7|FDXR nc|ENSG00000161513|P22570-7|FDXR nc|ENSG00000161513|P22570-7|FDXR MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.18341064453125 3 305.522526 913.545748 -0.37219 -0.00011371 0.3196 9.7644E-05 -0.052592 -1.6068E-05 305.5225761632563 38.785 0.63548 38.785 38.459 39.095 0 33 17 3 0 0 0 8448 1 7188 7188 14.838 6.6827 1 2992900 30737 12410 20517 20530 30356 30356 0.08551715602811782 NAKALRNK 8 Unmodified _NAKALRNK_ 0 0 0 nc|ENSG00000161513|P22570-7|FDXR nc|ENSG00000161513|P22570-7|FDXR nc|ENSG00000161513|P22570-7|FDXR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 305.522526 913.545748 -0.47749 -0.00014588 0.17351 5.3012E-05 -0.30398 -9.2872E-05 305.52259798873655 41.128 0.31252 38.493 38.33 38.642 -2.6348 -0.10806 -0.00019164 NaN 14.838 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 647470 30738 12410 20517 20530 0.08551715602811782 NAKALRNK 8 Unmodified _NAKALRNK_ 0 0 0 nc|ENSG00000161513|P22570-7|FDXR nc|ENSG00000161513|P22570-7|FDXR nc|ENSG00000161513|P22570-7|FDXR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 305.522526 913.545748 -0.61665 -0.0001884 0.57324 0.00017514 -0.043407 -1.3262E-05 305.52269604664906 41.015 0.45748 38.525 38.286 38.743 -2.4896 -0.075944 0.00017474 NaN 14.838 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 949640 30739 12410 20517 20530 0.08551715602811782 NAKLAALIL 9 Unmodified _NAKLAALIL_ 0 0 0 REV__tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1 REV__tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.20098876953125 3 309.539294 925.596052 -0.75114 -0.00023251 0.87059 0.00026948 0.11946 3.6977E-05 309.5394683348617 50.862 0.59318 47.811 47.54 48.133 -3.0517 32 16 3 0 0 0 0.5428 1 9376 9376 4.897 2.2658 1 1164800 + 30740 25297 20518 20531 30357 30357 0.13027825207950627 NAKLAALIL 9 Unmodified _NAKLAALIL_ 0 0 0 REV__tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1 REV__tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 309.539294 925.596052 -0.16578 -5.1315E-05 0.21031 6.5099E-05 0.044528 1.3783E-05 309.53931563689247 48.169 0.45504 48.169 47.858 48.313 0 0.27991 -0.00011927 NaN 4.897 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1125000 + 30741 25297 20518 20531 0.13027825207950627 NAKLAALIL 9 Unmodified _NAKLAALIL_ 0 0 0 REV__tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1 REV__tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 309.539294 925.596052 -0.42143 -0.00013045 0.36699 0.0001136 -0.054435 -1.685E-05 309.5393487431823 50.662 0.46413 47.78 47.572 48.036 -2.8815 -0.10842 2.6227E-05 NaN 4.897 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1174700 + 30742 25297 20518 20531 0.13027825207950627 NAKLAALIL 9 Unmodified _NAKLAALIL_ 0 0 0 REV__tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1 REV__tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 309.539294 925.596052 0.043312 1.3407E-05 -0.073913 -2.2879E-05 -0.030601 -9.4723E-06 309.539233191289 50.841 0.58941 47.795 47.565 48.155 -3.0453 -0.093284 -0.00038321 NaN 4.897 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1040300 + 30743 25297 20518 20531 0.13027825207950627 NAKLAALIL 9 Unmodified _NAKLAALIL_ 0 0 0 REV__tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1 REV__tr|U7T1X6|U7T1X6_FUSNUUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murAPE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 309.539294 925.596052 -0.75114 -0.00023251 0.87059 0.00026948 0.11946 3.6977E-05 309.5394683348617 50.862 0.59318 47.811 47.54 48.133 -3.0517 -0.078206 0.00049388 NaN 4.897 32 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1164800 + 30744 25297 20518 20531 0.13027825207950627 NAKLHGKLQD 10 Unmodified _NAKLHGKLQD_ 0 0 0 REV__ENST00000548152.1_1_12:50498378-50500617:+|nuORF REV__ENST00000548152.1_1_12:50498378-50500617:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2124328613281 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 66.896 1 63.787 63.287 64.287 -3.1086 0 0 0 2.8426 1 12969 12969 0.26539 0 1 + 30745 17941 20519 20532 30358 30358 0.05815335111856257 NAMRVEPG 8 Unmodified _NAMRVEPG_ 0 0 0 REV__nc|ENSG00000083444|Q02809-2|PLOD1 REV__nc|ENSG00000083444|Q02809-2|PLOD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2166748046875 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 131.35 1 126.51 126.01 127.01 -4.8355 0 0 0 0.21486 1 25225 25225 5.7604 0 1 + 30746 14450 20520 20533 30359 30359 -0.023875877025943737 NAMRVEPG 8 Unmodified _NAMRVEPG_ 0 0 0 REV__nc|ENSG00000083444|Q02809-2|PLOD1 REV__nc|ENSG00000083444|Q02809-2|PLOD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156982421875 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 131.77 1 126.92 126.42 127.42 -4.8527 0 0 0 0.21486 1 25308 25308 5.7604 0 1 + 30747 14450 20520 20533 30360 30360 -0.023875877025943737 NAMRVEPG 8 Unmodified _NAMRVEPG_ 0 0 0 REV__nc|ENSG00000083444|Q02809-2|PLOD1 REV__nc|ENSG00000083444|Q02809-2|PLOD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2279968261719 2 437.215995 872.417436 -0.33937 -0.00014838 -0.077454 -3.3864E-05 -0.41682 -0.00018224 437.21644635740506 81.758 0.34409 78.07 77.945 78.289 -3.6879 11 9 2 0 0 0 8448 1 15567 15567 0.62683 0.48854 1 394760 + 30748 14450 20520 20533 30361 30361 -0.023875877025943737 NAQAVFSPLKW 11 Unmodified _NAQAVFSPLKW_ 0 0 0 REV__DNAJC22|p.P75Lfs*2|1|0.33|ENSG00000178401|chr12:49349092-49349092|C/-|frameshift_variant REV__DNAJC22|p.P75Lfs*2|1|0.33|ENSG00000178401|chr12:49349092-49349092|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7759399414062 2 630.840405 1259.66626 NaN NaN NaN NaN NaN NaN NaN 116.12 1 111.54 111.04 112.04 -4.5815 0 0 0 0.23379 1 22284 22284 5.2969 0 1 + 30749 13725 20521 20534 30362 30362 0.046810788057428 NASGDCLDHY 10 Unmodified _NASGDCLDHY_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.780029296875 2 547.714013 1093.41347 NaN NaN NaN NaN NaN NaN NaN 140.53 1 135.66 135.16 136.16 -4.8678 0 0 0 2.8426 1 27095 27095 0.26539 0 1 + 30750 15894 20522 20535 30363 30363 -0.12949721986979057 NASGDELVRC 10 Unmodified _NASGDELVRC_ 0 0 0 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2607421875 2 532.24548 1062.47641 -0.029448 -1.5673E-05 0.31105 0.00016556 0.28161 0.00014988 532.2455438492582 88.615 0.57335 84.822 84.552 85.125 -3.7926 31 15 3 0 0 0 0.26497 1 17345 17345 39.95 10.868 1 2886000 30751 1257 20523 20536 30364 30364 -0.05233156198914912 NASGDELVRC 10 Unmodified _NASGDELVRC_ 0 0 0 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.24548 1062.47641 0.16544 8.8053E-05 -0.1887 -0.00010043 -0.023259 -1.238E-05 532.2454853623937 84.594 0.45734 84.594 84.346 84.803 0 -0.082212 2.6293E-05 NaN 39.95 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2476800 30752 1257 20523 20536 -0.05233156198914912 NASGDELVRC 10 Unmodified _NASGDELVRC_ 0 0 0 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.24548 1062.47641 0.7504 0.00039939 -0.52778 -0.00028091 0.22261 0.00011848 532.2451459193325 88.61 0.89411 84.614 84.256 85.15 -3.9953 -0.062204 -0.00033466 NaN 39.95 52 25 3 NaN NaN NaN NaN 0 NaN NaN 0 1718000 30753 1257 20523 20536 -0.05233156198914912 NASGDELVRC 10 Unmodified _NASGDELVRC_ 0 0 0 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.24548 1062.47641 0.24857 0.0001323 -0.38172 -0.00020317 -0.13315 -7.0871E-05 532.2451743085383 88.425 0.73421 84.675 84.327 85.061 -3.7501 -0.0013271 -0.00017918 NaN 39.95 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2250200 30754 1257 20523 20536 -0.05233156198914912 NAVVLSQTAY 10 Unmodified _NAVVLSQTAY_ 0 0 0 REV__nc|ENSG00000137760|Q96BT7-3|ALKBH8 REV__nc|ENSG00000137760|Q96BT7-3|ALKBH8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2837524414062 2 533.282389 1064.55022 -0.063334 -3.3775E-05 0.29373 0.00015664 0.2304 0.00012287 533.2823870617874 79.754 0.69771 76.078 75.69 76.387 -3.676 37 19 3 0 0 0 0.6817 1 15144 15144 13.042 0.80181 1 4881400 + 30755 16405 20524 20537 30365 30365 0.02053135235018999 NAWAFYFLSFL 11 Unmodified _NAWAFYFLSFL_ 0 0 0 ENST00000496494.5_1_8:72111577-72234167:-|nuORF ENST00000496494.5_1_8:72111577-72234167:-|nuORF ENST00000496494.5_1_8:72111577-72234167:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2331237792969 3 460.23253 1377.67576 NaN NaN NaN NaN NaN NaN NaN 98.539 1 94.583 94.083 95.083 -3.9564 0 0 0 0.22632 1 18913 18913 3.0723 0 1 30756 10579 20525 20538 30366 30366 0.0020284709128191025 NCACEYEDCC 10 Unmodified _NCACEYEDCC_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3224487304688 2 576.658677 1151.3028 NaN NaN NaN NaN NaN NaN NaN 168.71 1 163.92 163.42 164.42 -4.7898 0 0 0 2.8426 1 34124 34124 0 0 1 + 30757 15218 20526 20539 30367 30367 -0.26679769353381744 NCACEYEDCC 10 Unmodified _NCACEYEDCC_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3224487304688 2 576.658677 1151.3028 NaN NaN NaN NaN NaN NaN NaN 168.73 1 163.94 163.44 164.44 -4.7898 0 0 0 0.22588 1 34128 34128 0 0 1 + 30758 15218 20526 20539 30368 30368 -0.26679769353381744 NCACEYEDCC 10 Unmodified _NCACEYEDCC_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3187255859375 2 576.658677 1151.3028 NaN NaN NaN NaN NaN NaN NaN 117.55 1 113.15 112.65 113.65 -4.4088 0 0 0 0.22588 1 22624 22624 0 0 1 + 30759 15218 20526 20539 30369 30369 -0.26679769353381744 NCGARGAL 8 Unmodified _NCGARGAL_ 0 0 0 IRAK3|p.M200Cfs*26|1|0.4|ENSG00000090376|chr12:66217174-66217174|A/-|frameshift_variant;IRAK3|p.P409Sfs*27|1|0.06|ENSG00000090376|chr12:66245168-66245175|TGCCTCCC/-|frameshift_variant;nc|ENSG00000090376|Q9Y616-2|IRAK3;ENSG00000090376|ENST00000261233|IRAK3 IRAK3|p.M200Cfs*26|1|0.4|ENSG00000090376|chr12:66217174-66217174|A/-|frameshift_variant IRAK3|p.M200Cfs*26|1|0.4|ENSG00000090376|chr12:66217174-66217174|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21063232421875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 118.33 1 118.33 117.83 118.83 0 0 0 0 0.2396 1 23306 23306 0.12286 0 1 30760 1782 20527 20540 30370 30370 -0.024761260455534284 NCSCCYVE 8 Unmodified _NCSCCYVE_ 0 0 0 REV__ENST00000564040.6_1_16:66857135-66864856:-|nuORF REV__ENST00000564040.6_1_16:66857135-66864856:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2441711425781 2 460.650981 919.28741 0.25471 0.00011733 -2.1077 -0.00097089 -1.8529 -0.00085356 460.6511557061659 125.89 0.55816 121.12 120.9 121.46 -4.7681 30 15 3 0 0 0 0.89479 1 24152 24152 0.25148 0 1 1620500 + 30761 23086 20528 20541 30371 30371 -0.17546268088267425 NCYKLATELS 10 Unmodified _NCYKLATELS_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-4|CACNA1I REV__nc|ENSG00000100346|Q9P0X4-4|CACNA1I MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.20928955078125 3 381.190113 1140.54851 NaN NaN NaN NaN NaN NaN NaN 151.98 1 146.8 146.3 147.3 -5.1759 0 0 0 2.8426 1 29453 29453 0.043787 0 1 + 30762 14696 20529 20542 30372 30372 -0.01614241845209108 NDCSCNCD 8 Unmodified _NDCSCNCD_ 0 0 0 ENSG00000242120|ENST00000567252|MDFIC2;nc|ENSG00000242120|A0A1B0GVS7-2|MDFIC2 ENSG00000242120|ENST00000567252|MDFIC2 ENSG00000242120|ENST00000567252|MDFIC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22796630859375 2 437.11222 872.209887 NaN NaN NaN NaN NaN NaN NaN 42.807 1 42.807 42.307 43.307 0 0 0 0 0.2396 1 8013 8013 0.30703 0 1 30763 7864 20530 20543 30373 30373 -0.2313290602445477 NDCSCNCD 8 Unmodified _NDCSCNCD_ 0 0 0 ENSG00000242120|ENST00000567252|MDFIC2;nc|ENSG00000242120|A0A1B0GVS7-2|MDFIC2 ENSG00000242120|ENST00000567252|MDFIC2 ENSG00000242120|ENST00000567252|MDFIC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2231140136719 2 437.11222 872.209887 NaN NaN NaN NaN NaN NaN NaN 32.861 1 30.631 30.131 31.131 -2.2305 0 0 0 0.2396 1 5997 5997 0.12286 0 1 30764 7864 20530 20543 30374 30374 -0.2313290602445477 NDCSCNCD 8 Unmodified _NDCSCNCD_ 0 0 0 ENSG00000242120|ENST00000567252|MDFIC2;nc|ENSG00000242120|A0A1B0GVS7-2|MDFIC2 ENSG00000242120|ENST00000567252|MDFIC2 ENSG00000242120|ENST00000567252|MDFIC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2283630371094 2 437.11222 872.209887 NaN NaN NaN NaN NaN NaN NaN 44.705 1 41.939 41.439 42.439 -2.7661 0 0 0 0.2396 1 8100 8100 0.30703 0 1 30765 7864 20530 20543 30375 30375 -0.2313290602445477 NDDCVSGWVGK 11 Unmodified _NDDCVSGWVGK_ 0 0 0 REV__ENSG00000073754|ENST00000368174|CD5L REV__ENSG00000073754|ENST00000368174|CD5L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2591552734375 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 170.38 1 165.59 165.09 166.09 -4.7898 0 0 0 0.23151 1 34576 34576 7.1017 0.37856 1 + 30766 14305 20531 20544 30376 30376 -0.07948887027441742 NDDDDEDEGE 10 Unmodified _NDDDDEDEGE_ 0 0 0 SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant;ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H;SUPT6H|p.M124Cfs*70|1|0.31|ENSG00000109111|chr17:28674988-28674988|A/-|frameshift_variant;SUPT6H|p.E143Kfs*51|1|0.38|ENSG00000109111|chr17:28675046-28675046|A/-|frameshift_variant SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.33544921875 2 576.676002 1151.33745 0.19258 0.00011106 -3.4578 -0.001994 -3.2653 -0.001883 576.6752467671183 123.99 0.14032 119.41 119.34 119.48 -4.5757 5 3 2 0 0 0 0.91149 1 24440 24440 1.3295 0.80477 1 931310 30767 2517 20532 20545 30377 30377 -0.2321649214406989 NDEDDSDV 8 Unmodified _NDEDDSDV_ 0 0 0 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.0396423339844 3 303.442043 907.3043 -0.75384 -0.00022875 -1.2021 -0.00036476 -1.9559 -0.00059351 303.4416211280294 44.025 0.38614 41.278 41.147 41.533 -2.7475 11 10 2 0 0 0 1.0282 1 7945 7945 0.40072 0 1 232440 + 30768 24197 20533 20546 30378 30378 -0.15306029405451227 NDEEPKEEAAE 11 Unmodified _NDEEPKEEAAE_ 0 0 0 REV__ENST00000430644.5_1_4:728709-759864:+|nuORF REV__ENST00000430644.5_1_4:728709-759864:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76513671875 2 630.764954 1259.51536 NaN NaN NaN NaN NaN NaN NaN 178.82 1 174.03 173.53 174.53 -4.7898 0 0 0 0.22632 1 36587 36587 0 0 1 + 30769 18979 20534 20547 30379 30379 -0.10402197154189707 NDEIRQAQL 9 Unmodified _NDEIRQAQL_ 0 0 0 ENSG00000131773|ENST00000355849|KHDRBS3;nc|ENSG00000131773|O75525-2|KHDRBS3 ENSG00000131773|ENST00000355849|KHDRBS3 ENSG00000131773|ENST00000355849|KHDRBS3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7933959960938 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 72.886 1 69.575 69.075 70.075 -3.3107 0 0 0 0.22962 1 14207 14207 14.838 2.3067 1 30770 3693 20535 20548 30380 30380 0.0071846546118194965 NDFEFHVY 8 Unmodified _NDFEFHVY_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 536.7348022460938 2 535.732532 1069.45051 0.16421 8.7975E-05 -0.15475 -8.2906E-05 0.009462 5.0691E-06 535.7323923379828 127.78 0.6973 127.78 127.44 128.14 0 51 19 3 0 0 0 8448 1 25269 25269 51.63 33.257 1 11594000 30771 4201 20536 20549 30381 30381 -0.08143682378886297 NDFEFHVY 8 Unmodified _NDFEFHVY_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 535.732532 1069.45051 0.10647 5.7041E-05 0.1161 6.22E-05 0.22258 0.00011924 535.7325620582914 132.66 0.81857 128.02 127.62 128.44 -4.6399 0.11371 0.00013824 NaN 51.63 67 22 4 NaN NaN NaN NaN 0 NaN NaN 0 12517000 30772 4201 20536 20549 -0.08143682378886297 NDFEFHVY 8 Unmodified _NDFEFHVY_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 535.732532 1069.45051 0.31785 0.00017028 0.056955 3.0512E-05 0.3748 0.00020079 535.7324547948273 132.79 0.78517 127.93 127.49 128.28 -4.8528 0.02917 7.4863E-05 NaN 51.63 49 21 3 NaN NaN NaN NaN 0 NaN NaN 0 10016000 30773 4201 20536 20549 -0.08143682378886297 NDFEFHVY 8 Unmodified _NDFEFHVY_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 535.732532 1069.45051 0.25857 0.00013853 -0.062506 -3.3486E-05 0.19607 0.00010504 535.732468174665 132.68 0.83466 127.88 127.49 128.33 -4.799 -0.021222 -5.3134E-05 NaN 51.63 60 23 4 NaN NaN NaN NaN 0 NaN NaN 0 11258000 30774 4201 20536 20549 -0.08143682378886297 NDGLLGDYSL 10 Unmodified _NDGLLGDYSL_ 0 0 0 REV__ENSG00000213401|ENST00000393869|MAGEA12 REV__ENSG00000213401|ENST00000393869|MAGEA12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27685546875 2 533.756204 1065.49785 0.64932 0.00034658 -0.78424 -0.00041859 -0.13492 -7.2013E-05 533.7558281807384 86.963 0.8763 83.012 82.546 83.423 -3.9503 43 17 4 0 0 0 0.79872 1 16467 16467 19.257 4.4187 1 7815400 + 30775 19639 20537 20550 30382 30382 -0.03227447898552782 NDHGSATAT 9 Unmodified _NDHGSATAT_ 0 0 0 nc|ENSG00000179057|Q8N9C0|IGSF22;ENSG00000179057|ENST00000513874|IGSF22 nc|ENSG00000179057|Q8N9C0|IGSF22 nc|ENSG00000179057|Q8N9C0|IGSF22 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2178955078125 2 437.188488 872.362424 NaN NaN NaN NaN NaN NaN NaN 44.543 1 41.753 41.253 42.253 -2.79 0 0 0 0.23508 1 8372 8372 8.7454 2.985 1 30776 6606 20538 20551 30383 30383 -0.0788630296951851 NDIGMDYDY 9 Unmodified _NDIGMDYDY_ 0 0 0 nc|ENSG00000150687|O95084-2|PRSS23;ENSG00000150687|ENST00000280258|PRSS23;PRSS23|p.D303Tfs*17|1|0.14|ENSG00000150687|chr11:86808549-86808558|TGACTTGCTC/-|frameshift_variant;PRSS23|p.Y302Mfs*21|1|0.15|ENSG00000150687|chr11:86808547-86808547|T/-|frameshift_variant nc|ENSG00000150687|O95084-2|PRSS23 nc|ENSG00000150687|O95084-2|PRSS23 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 368.86517333984375 3 369.14294 1104.40699 -0.52742 -0.00019469 -3.2483 -0.0011991 -3.7757 -0.0013938 369.1423479007967 67.813 0.9907 67.813 67.333 68.324 0 42 27 2 0 0 0 0.61771 1 13142 13142 1.2148 0 1 1466300 30777 4833 20539 20552 30384 30384 -0.1410365993835967 NDISAFTY 8 Unmodified _NDISAFTY_ 0 0 0 ENST00000514994.1_1_5:1057584-1063994:-|nuORF;SLC12A7|p.N1047Tfs*15|1|0.25|ENSG00000113504|chr5:1053374-1053374|G/-|frameshift_variant;ENSG00000113504|ENST00000264930|SLC12A7 ENST00000514994.1_1_5:1057584-1063994:-|nuORF ENST00000514994.1_1_5:1057584-1063994:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.4937133789062 1 930.420339 929.413062 0.071224 6.6268E-05 0.13139 0.00012225 0.20262 0.00018852 930.420464630382 114.24 0.6032 109.77 109.51 110.11 -4.4726 20 16 2 0 0 0 0.056387 1 22504 22504 114.65 6.652 1 1352800 30778 2746 20540 20553 30385 30385 -0.05446773644530367 NDKLWEQAH 9 Unmodified _NDKLWEQAH_ 0 0 0 REV__ENST00000494017.5_1_2:202591977-202598136:-|nuORF REV__ENST00000494017.5_1_2:202591977-202598136:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2213134765625 3 380.8526 1139.53597 -0.0010717 -4.0816E-07 -0.25002 -9.5222E-05 -0.25109 -9.563E-05 380.85263408788035 40.082 0.31619 37.542 37.359 37.675 -2.5398 11 8 2 0 0 0 0.87708 1 7154 7154 4.1895 0.60244 1 588620 + 30779 22359 20541 20554 30386 30386 -0.02821517193251566 NDQRPQVVPA 10 Unmodified _NDQRPQVVPA_ 0 0 0 NISCH|p.E1045V|1|0.29|ENSG00000010322|chr3:52489356-52489356|A/T|missense_variant NISCH|p.E1045V|1|0.29|ENSG00000010322|chr3:52489356-52489356|A/T|missense_variant NISCH|p.E1045V|1|0.29|ENSG00000010322|chr3:52489356-52489356|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.212158203125 3 375.2 1122.57817 0.15115 5.671E-05 0.26696 0.00010016 0.41811 0.00015687 375.2003904036468 62.819 0.78142 59.403 59.122 59.903 -3.4158 32 21 3 0 0 0 0.52989 1 11778 11778 1.9064 0.57684 1 1600200 30780 12688 20542 20555 30387 30387 0.021784582151667564 NDVLAKQKQ 9 Unmodified _NDVLAKQKQ_ 0 0 0 REV__nc|ENSG00000130787|O75146-2|HIP1R REV__nc|ENSG00000130787|O75146-2|HIP1R MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2706298828125 2 522.29583 1042.57711 NaN NaN NaN NaN NaN NaN NaN 64.506 1 64.506 64.006 65.006 0 0 0 0 0.19512 1 12419 12419 12.241 9.6094 1 + 30781 16032 20543 20556 30388 30388 0.057522438462456194 NDVLGVENQV 10 Unmodified _NDVLGVENQV_ 0 0 0 REV__ENST00000559238.5_1_15:41060140-41072106:-|nuORF REV__ENST00000559238.5_1_15:41060140-41072106:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7754516601562 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 117.16 1 117.16 116.66 117.66 0 0 0 0 2.8426 1 23076 23076 14.405 13.34 1 + 30782 14905 20544 20557 30389 30389 -0.004043566329301029 NEAALVPE 8 Unmodified _NEAALVPE_ 0 0 0 REV__nc|ENSG00000010072|Q9H040-3|SPRTN REV__nc|ENSG00000010072|Q9H040-3|SPRTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3880004882812 1 842.425424 841.418148 0.31624 0.00026641 0.090098 7.5901E-05 0.40634 0.00034231 842.4253127400385 90.233 0.53397 86.373 86.116 86.65 -3.8595 17 14 2 0 0 0 0.64512 1 17662 17662 19.257 1.122 1 1370300 + 30783 13916 20545 20558 30390 30390 -0.008904697818934437 NEAALVPE 8 Unmodified _NEAALVPE_ 0 0 0 REV__nc|ENSG00000010072|Q9H040-3|SPRTN REV__nc|ENSG00000010072|Q9H040-3|SPRTN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 842.425424 841.418148 0.58188 0.00049019 0.12226 0.000103 0.70414 0.00059319 842.4254484905869 90.584 0.77251 86.54 86.055 86.828 -4.0443 0.083372 1.2335E-05 NaN 19.257 27 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1837300 + 30784 13916 20545 20558 -0.008904697818934437 NEAAPEIW 8 Unmodified _NEAAPEIW_ 0 0 0 PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2 PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2502746582031 2 465.2218 928.429047 NaN NaN NaN NaN NaN NaN NaN 33.786 1 31.639 31.139 32.139 -2.1468 0 0 0 0.23312 1 5905 5905 6.2058 4.4635 1 30785 2404 20546 20559 30391 30391 -0.03803067407625349 NEAAPEIW 8 Unmodified _NEAAPEIW_ 0 0 0 PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2 PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24090576171875 2 465.2218 928.429047 NaN NaN NaN NaN NaN NaN NaN 33.828 1 31.682 31.182 32.182 -2.1468 0 0 0 0.23664 1 5912 5912 3.2813 0 1 30786 2404 20546 20559 30392 30392 -0.03803067407625349 NEADRKGGP 9 Unmodified _NEADRKGGP_ 0 0 0 REV__ENSG00000147437|ENST00000421054|GNRH1 REV__ENSG00000147437|ENST00000421054|GNRH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1701354980469 3 315.157912 942.451907 NaN NaN NaN NaN NaN NaN NaN 60.886 1 57.662 57.162 58.162 -3.2237 0 0 0 0.19677 1 11390 11390 0.12781 0 1 + 30787 16933 20547 20560 30393 30393 -0.021620482901312243 NEADRTLIY 9 Unmodified _NEADRTLIY_ 0 0 0 ENST00000548878.6_1_12:110874873-110883331:-|nuORF;ENSG00000111229|ENST00000228825|ARPC3 ENST00000548878.6_1_12:110874873-110883331:-|nuORF ENST00000548878.6_1_12:110874873-110883331:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7772216796875 2 547.77747 1093.54039 0.33983 0.00018615 -0.31923 -0.00017487 0.020605 1.1287E-05 547.7772394981447 73.277 1.195 73.277 72.539 73.734 0 70 33 4 0 0 0 0.010315 3 14215 14148;14215;14261 103.82 47.647 1 10309000 30788 2609 20548 20561 30394;30395;30396 30395 -0.0026405277030789875 NEADRTLIY 9 Unmodified _NEADRTLIY_ 0 0 0 ENST00000548878.6_1_12:110874873-110883331:-|nuORF;ENSG00000111229|ENST00000228825|ARPC3 ENST00000548878.6_1_12:110874873-110883331:-|nuORF ENST00000548878.6_1_12:110874873-110883331:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7772216796875 2 547.77747 1093.54039 0.1636 8.9618E-05 -0.44079 -0.00024146 -0.27719 -0.00015184 547.7771485114448 76.772 0.76149 73.357 72.97 73.732 -3.4151 55 21 3 0 0 0 0.027341 2 15020 14935;15020 84.522 28.345 1 7595100 30789 2609 20548 20561 30397;30398 30398 -0.0026405277030789875 NEADRTLIY 9 Unmodified _NEADRTLIY_ 0 0 0 ENST00000548878.6_1_12:110874873-110883331:-|nuORF;ENSG00000111229|ENST00000228825|ARPC3 ENST00000548878.6_1_12:110874873-110883331:-|nuORF ENST00000548878.6_1_12:110874873-110883331:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.777099609375 2 547.77747 1093.54039 0.080095 4.3874E-05 -0.42366 -0.00023207 -0.34357 -0.0001882 547.7772185526096 77.063 0.69705 73.297 72.912 73.609 -3.7664 49 19 3 0 0 0 0.0048521 2 14614 14568;14614 114.19 48.951 1 5697900 30790 2609 20548 20561 30399;30400 30400 -0.0026405277030789875 NEADRTLIY 9 Unmodified _NEADRTLIY_ 0 0 0 ENST00000548878.6_1_12:110874873-110883331:-|nuORF;ENSG00000111229|ENST00000228825|ARPC3 ENST00000548878.6_1_12:110874873-110883331:-|nuORF ENST00000548878.6_1_12:110874873-110883331:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7772827148438 2 547.77747 1093.54039 0.20637 0.00011305 -0.50568 -0.000277 -0.29931 -0.00016395 547.7771152232422 76.895 0.84562 73.239 72.904 73.749 -3.6551 50 23 3 0 0 0 0.075017 1 14694 14694 63.227 15.479 1 7943500 30791 2609 20548 20561 30401 30401 -0.0026405277030789875 NEAIAELTEP 10 Unmodified _NEAIAELTEP_ 0 0 0 REV__nc|ENSG00000072756|Q96Q11-2|TRNT1 REV__nc|ENSG00000072756|Q96Q11-2|TRNT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7695922851562 2 543.769311 1085.52407 NaN NaN NaN NaN NaN NaN NaN 70.635 1 67.385 66.885 67.885 -3.2492 0 0 0 0.22579 1 13746 13746 14.405 0.8975 1 + 30792 14291 20549 20562 30402 30402 -0.015271787270876303 NEAIEFSF 8 Unmodified _NEAIEFSF_ 0 0 0 nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;WNK3|p.R872Pfs*13|1|0.07|ENSG00000196632|chrX:54250092-54250093|-/AAAG|frameshift_variant;WNK3|p.I1462Rfs*3|1|0.37|ENSG00000196632|chrX:54237181-54237182|-/TC|frameshift_variant;nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;WNK3|p.N1685Tfs*71|1|0.19|ENSG00000196632|chrX:54202010-54202010|T/-|frameshift_variant;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3 nc|ENSG00000060237|Q9H4A3-4|WNK1;WNK3|p.I1462Rfs*3|1|0.37|ENSG00000196632|chrX:54237181-54237182|-/TC|frameshift_variant nc|ENSG00000060237|Q9H4A3-4|WNK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7229309082031 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 93.927 1 90.083 89.583 90.583 -3.844 0 0 0 0.20896 1 18014 18014 18.135 0 1 30793 1306;7294 20550 20563 30403 30403 -0.05078487127457265 NEALIEKL 8 Unmodified _NEALIEKL_ 0 0 0 SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant;ENST00000553923.1_1_14:35483969-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24755859375 2 465.26875 928.522947 0.3115 0.00014493 -0.43624 -0.00020297 -0.12474 -5.8039E-05 465.2685143605308 98.769 0.86623 98.769 98.295 99.161 0 55 24 3 0 0 0 0.082857 1 19426 19426 66.457 2.4962 1 12655000 30794 2019 20551 20564 30404 30404 0.05582651694669494 NEALIEKL 8 Unmodified _NEALIEKL_ 0 0 0 SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant;ENST00000553923.1_1_14:35483969-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2544860839844 2 465.26875 928.522947 -0.08713 -4.0539E-05 -0.12111 -5.6351E-05 -0.20824 -9.689E-05 465.26863012030606 102.44 0.91658 98.253 97.855 98.771 -4.1861 73 25 4 0 0 0 0.072337 1 20190 20190 70.332 6.3715 1 12643000 30795 2019 20551 20564 30405 30405 0.05582651694669494 NEALIEKL 8 Unmodified _NEALIEKL_ 0 0 0 SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant;ENST00000553923.1_1_14:35483969-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25372314453125 2 465.26875 928.522947 0.25102 0.00011679 -0.4487 -0.00020877 -0.19768 -9.1973E-05 465.2684855864644 102.58 0.90141 98.261 97.84 98.741 -4.3208 64 25 3 0 0 0 0.0022445 1 19659 19659 93.166 6.834 1 13687000 30796 2019 20551 20564 30406 30406 0.05582651694669494 NEALIEKL 8 Unmodified _NEALIEKL_ 0 0 0 SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant;ENST00000553923.1_1_14:35483969-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25439453125 2 465.26875 928.522947 0.52128 0.00024254 -0.67428 -0.00031372 -0.153 -7.1187E-05 465.2683766280684 102.42 0.90924 98.401 97.936 98.845 -4.0212 65 25 3 0 0 0 0.089371 2 19641 19641;19744 79.596 6.6284 1 14874000 30797 2019 20551 20564 30407;30408 30407 0.05582651694669494 NEALWREVA 9 Unmodified _NEALWREVA_ 0 0 0 ENST00000527328.5_1_8:145534845-145537878:+|nuORF;ENST00000532338.5_1_8:145534845-145537990:+|nuORF;nc|ENSG00000185122|Q00613-2|HSF1;ENSG00000185122|ENST00000528838|HSF1 ENST00000527328.5_1_8:145534845-145537878:+|nuORF ENST00000527328.5_1_8:145534845-145537878:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7893676757812 2 544.28018 1086.54581 0.7767 0.00042274 -0.31071 -0.00016911 0.46599 0.00025363 544.2799766488608 107.79 0.59566 103.66 103.35 103.95 -4.135 24 16 2 0 0 0 0.72134 1 20710 20710 21.59 0 1 1020700 30798 6963 20552 20565 30409 30409 0.005996708121301708 NEAMYRFY 8 Unmodified _NEAMYRFY_ 0 0 0 REV__ENST00000577978.1_1_17:61877821-61882415:+|nuORF REV__ENST00000577978.1_1_17:61877821-61882415:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.76904296875 2 547.242209 1092.46987 0.72395 0.00039617 1.1989 0.00065611 1.9229 0.0010523 547.2428425540095 102.63 0.69596 102.63 102.27 102.97 0 34 19 2 0 0 0 0.97173 1 20206 20206 18.135 10.846 1 5193500 + 30799 13655 20553 20566 30410 30410 -0.07267049359643352 NEAMYRFY 8 Unmodified _NEAMYRFY_ 0 0 0 REV__ENST00000577978.1_1_17:61877821-61882415:+|nuORF REV__ENST00000577978.1_1_17:61877821-61882415:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7765502929688 2 547.242209 1092.46987 0.78787 0.00043116 1.5592 0.00085323 2.347 0.0012844 547.2428321029015 106.98 0.83018 102.85 102.39 103.22 -4.135 52 23 3 0 0 0 0.73426 1 20635 20635 9.3474 1.4373 1 4048200 + 30800 13655 20553 20566 30411 30411 -0.07267049359643352 NEAQRLAELI 10 Unmodified _NEAQRLAELI_ 0 0 0 REV__ENSG00000171951|ENST00000305409|SCG2 REV__ENSG00000171951|ENST00000305409|SCG2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 386.2170715332031 3 386.215539 1155.62479 NaN NaN NaN NaN NaN NaN NaN 50.99 1 50.99 50.49 51.49 0 0 0 0 0.22588 1 9664 9664 5.4027 0 1 + 30801 18263 20554 20567 30412 30412 0.053198980464458145 NEARNAKRQ 9 Unmodified _NEARNAKRQ_ 0 0 0 REV__TRMT10B|p.R89Q|1|0.33|ENSG00000165275|chr9:37762656-37762656|G/A|missense_variant REV__TRMT10B|p.R89Q|1|0.33|ENSG00000165275|chr9:37762656-37762656|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7901000976562 2 543.791778 1085.569 NaN NaN NaN NaN NaN NaN NaN 158.2 1 158.2 157.7 158.7 0 0 0 0 0.19638 1 31760 31760 2.6312 0 1 + 30802 25485 20555 20568 30413 30413 0.02964109649474267 NEATKLFKD 9 Unmodified _NEATKLFKD_ 0 0 0 REV__ENST00000577627.1_1_18:5003036-5003240:-|nuORF REV__ENST00000577627.1_1_18:5003036-5003240:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2828369140625 2 533.282389 1064.55022 0.23043 0.00012289 -0.12183 -6.4969E-05 0.1086 5.7916E-05 533.2823100455149 89.907 1.4737 86.129 85.484 86.958 -3.7779 122 41 4 0 0 0 0.5059 1 17322 17322 19.257 0 1 11397000 + 30803 23217 20556 20569 30414 30414 0.020531352350417365 NEAYGYQI 8 Unmodified _NEAYGYQI_ 0 0 0 nc|ENSG00000143257|Q14994-5|NR1I3;nc|ENSG00000143257|Q14994-6|NR1I3;ENSG00000143257|ENST00000367983|NR1I3;nc|ENSG00000143257|Q14994|NR1I3;nc|ENSG00000143257|Q14994-8|NR1I3;nc|ENSG00000143257|Q14994-4|NR1I3;nc|ENSG00000143257|Q14994-7|NR1I3;nc|ENSG00000143257|Q14994-3|NR1I3 nc|ENSG00000143257|Q14994-5|NR1I3 nc|ENSG00000143257|Q14994-5|NR1I3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73760986328125 2 479.219257 956.423961 0.058755 2.8156E-05 1.0002 0.00047931 1.0589 0.00050746 479.219469055995 96.445 0.24313 92.347 92.247 92.49 -4.0978 8 6 2 0 0 0 0.64118 1 18900 18900 24.021 3.5669 1 466870 30804 4468 20557 20570 30415 30415 -0.055993712702274934 NEAYGYQI 8 Unmodified _NEAYGYQI_ 0 0 0 nc|ENSG00000143257|Q14994-5|NR1I3;nc|ENSG00000143257|Q14994-6|NR1I3;ENSG00000143257|ENST00000367983|NR1I3;nc|ENSG00000143257|Q14994|NR1I3;nc|ENSG00000143257|Q14994-8|NR1I3;nc|ENSG00000143257|Q14994-4|NR1I3;nc|ENSG00000143257|Q14994-7|NR1I3;nc|ENSG00000143257|Q14994-3|NR1I3 nc|ENSG00000143257|Q14994-5|NR1I3 nc|ENSG00000143257|Q14994-5|NR1I3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 479.219257 956.423961 -0.053455 -2.5616E-05 2.5362 0.0012154 2.4827 0.0011898 479.2206496081034 96.387 0.17908 92.468 92.398 92.577 -3.9194 0.060327 0.0013254 NaN 24.021 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 380880 30805 4468 20557 20570 -0.055993712702274934 NECCEECS 8 Unmodified _NECCEECS_ 0 0 0 REV__ENST00000348367.8_1_10:113914399-113914429:-|nuORF REV__ENST00000348367.8_1_10:113914399-113914429:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2394104003906 2 458.627703 915.240853 NaN NaN NaN NaN NaN NaN NaN 46.979 1 44.037 43.537 44.537 -2.9421 0 0 0 0.21486 1 8552 8552 5.2307 4.5403 1 + 30806 20759 20558 20571 30416 30416 -0.22015752710217384 NECLPALGI 9 Unmodified _NECLPALGI_ 0 0 0 REV__ENST00000503467.1_1_4:17587853-17609209:+|nuORF REV__ENST00000503467.1_1_4:17587853-17609209:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.241455078125 2 465.241678 928.468803 -0.15134 -7.0408E-05 -0.13353 -6.2124E-05 -0.28487 -0.00013253 465.2415150200904 69.531 0.46107 66.351 66.188 66.649 -3.1796 16 12 2 0 0 0 0.2219 1 13560 13560 36.127 3.3413 1 1823400 + 30807 13823 20559 20572 30417 30417 0.001707362714341798 NEDDSKNEND 10 Unmodified _NEDDSKNEND_ 0 0 0 REV__TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant REV__TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2737426757812 2 590.223453 1178.43235 NaN NaN NaN NaN NaN NaN NaN 160.21 1 160.21 159.71 160.71 0 0 0 0 0.22588 1 32167 32167 2.4985 0.19575 1 + 30808 16863 20560 20573 30418 30418 -0.14972513882230487 NEDDSKNEND 10 Unmodified _NEDDSKNEND_ 0 0 0 REV__TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant REV__TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2520751953125 2 590.223453 1178.43235 NaN NaN NaN NaN NaN NaN NaN 160.24 1 160.24 159.74 160.74 0 0 0 0 0.22588 1 32175 32175 2.4985 0.19575 1 + 30809 16863 20560 20573 30419 30419 -0.14972513882230487 NEDEKQAQ 8 Unmodified _NEDEKQAQ_ 0 0 0 nc|ENSG00000133816|O94851|MICAL2;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;MICAL2|p.G94Efs*78|1|0.14|ENSG00000133816|chr11:12204262-12204262|G/-|frameshift_variant;ENST00000531732.5_1_11:12183702-12229694:+|nuORF nc|ENSG00000133816|O94851|MICAL2 nc|ENSG00000133816|O94851|MICAL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24542236328125 2 481.214703 960.414853 -0.14047 -6.7597E-05 4.1603 0.002002 4.0198 0.0019344 481.2175881512716 55.773 0.64105 55.773 55.404 56.046 0 27 17 2 0 0 0 0.86749 1 10610 10610 21.747 1.293 1 1462600 30810 12332 20561 20574 30420 30420 -0.0669376462656146 NEDFAAKY 8 Unmodified _NEDFAAKY_ 0 0 0 REV__ENSG00000083857|ENST00000441802|FAT1;REV__FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant REV__ENSG00000083857|ENST00000441802|FAT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.741455078125 2 479.219257 956.423961 -0.12525 -6.0022E-05 0.5388 0.0002582 0.41355 0.00019818 479.2193889962247 45.713 0.49373 42.847 42.537 43.031 -2.8665 23 13 3 0 0 0 0.96386 1 8291 8291 20.454 0 1 507480 + 30811 14460;23525 20562 20575 30421 30421 -0.05599371270238862 NEDLAKKY 8 Unmodified _NEDLAKKY_ 0 0 0 SNRK|p.N144Sfs*5|1|0.29|ENSG00000163788|chr3:43303634-43303635|AT/-|frameshift_variant;nc|ENSG00000163788|Q9NRH2-2|SNRK;ENST00000462810.1_1_3:43344695-43373803:+|nuORF;ENSG00000163788|ENST00000296088|SNRK SNRK|p.N144Sfs*5|1|0.29|ENSG00000163788|chr3:43303634-43303635|AT/-|frameshift_variant SNRK|p.N144Sfs*5|1|0.29|ENSG00000163788|chr3:43303634-43303635|AT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2642517089844 2 490.756007 979.497461 0.039925 1.9594E-05 0.51844 0.00025443 0.55836 0.00027402 490.7562008404905 23.599 0.30891 22.145 21.963 22.272 -1.4535 15 8 2 0 0 0 0.40884 1 3814 3814 47.594 9.4188 1 1257300 30812 5462 20563 20576 30422 30422 0.006891771722393969 NEDLRSWTA 9 Unmodified _NEDLRSWTA_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;HLA-G|p.A160V|1|0.18|ENSG00000204632|chr6:29828678-29828678|C/T|missense_variant;nc|ENSG00000204632|P17693-4|HLA-G;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;HLA-E|p.V157M|1|0.29|ENSG00000204592|chr6:30490374-30490374|G/A|missense_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;ENSG00000204642|ENST00000259951|HLA-F;ENST00000494367.1_1_6:29974674-29976922:+|nuORF ENSG00000206503|ENST00000376809|HLA-A;ENSG00000204642|ENST00000259951|HLA-F;ENST00000494367.1_1_6:29974674-29976922:+|nuORF ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.790771484375 2 546.259445 1090.50434 0.2333 0.00012744 -0.15461 -8.4455E-05 0.078698 4.2989E-05 546.2593557474946 79.86 2.0036 76.35 75.8 77.804 -3.5102 162 56 5 0 0 0 0.11828 1 15663 15663 49.554 1.8056 1 213670000 30813 7670;7601;10556 20564 20577 30423 30423 -0.037295099471975846 NEDLRSWTA 9 Unmodified _NEDLRSWTA_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;HLA-G|p.A160V|1|0.18|ENSG00000204632|chr6:29828678-29828678|C/T|missense_variant;nc|ENSG00000204632|P17693-4|HLA-G;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;HLA-E|p.V157M|1|0.29|ENSG00000204592|chr6:30490374-30490374|G/A|missense_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;ENSG00000204642|ENST00000259951|HLA-F;ENST00000494367.1_1_6:29974674-29976922:+|nuORF ENSG00000206503|ENST00000376809|HLA-A;ENSG00000204642|ENST00000259951|HLA-F;ENST00000494367.1_1_6:29974674-29976922:+|nuORF ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7769775390625 2 546.259445 1090.50434 -0.020107 -1.0983E-05 0.057869 3.1611E-05 0.037762 2.0628E-05 546.259498717662 80.144 2.2791 76.339 75.716 77.995 -3.8048 179 64 5 0 0 0 0.19171 2 15274 15274;15283 38.176 11.907 1 163350000 30814 7670;7601;10556 20564 20577 30424;30425 30424 -0.037295099471975846 NEDLRSWTA 9 Unmodified _NEDLRSWTA_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;HLA-G|p.A160V|1|0.18|ENSG00000204632|chr6:29828678-29828678|C/T|missense_variant;nc|ENSG00000204632|P17693-4|HLA-G;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;HLA-E|p.V157M|1|0.29|ENSG00000204592|chr6:30490374-30490374|G/A|missense_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;ENSG00000204642|ENST00000259951|HLA-F;ENST00000494367.1_1_6:29974674-29976922:+|nuORF ENSG00000206503|ENST00000376809|HLA-A;ENSG00000204642|ENST00000259951|HLA-F;ENST00000494367.1_1_6:29974674-29976922:+|nuORF ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.79345703125 2 546.259445 1090.50434 -0.054969 -3.0027E-05 -0.026363 -1.4401E-05 -0.081332 -4.4429E-05 546.2594510407517 79.935 2.0182 76.259 75.654 77.672 -3.676 185 57 5 0 0 0 0.24263 1 15286 15286 34.932 8.6639 1 163080000 30815 7670;7601;10556 20564 20577 30426 30426 -0.037295099471975846 NEDLWDSMA 9 Unmodified _NEDLWDSMA_ 0 0 0 ENST00000507859.1_1_5:96121490-96126328:-|nuORF;ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant;ERAP1|p.T768Nfs*53|1|0.2|ENSG00000164307|chr5:96781837-96781838|-/GAAAT|frameshift_variant;ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1 ENST00000507859.1_1_5:96121490-96126328:-|nuORF ENST00000507859.1_1_5:96121490-96126328:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.280029296875 2 540.718764 1079.42298 0.20372 0.00011016 -4.1336 -0.0022351 -3.9298 -0.0021249 540.7163894037727 96.411 0.45236 92.176 92.019 92.471 -4.2348 15 12 2 0 0 0 0.74655 1 18420 18420 21.747 2.3076 1 1112500 30816 5531 20565 20578 30427 30427 -0.11355953701445287 NEDLWDSMA 9 Unmodified _NEDLWDSMA_ 0 0 0 ENST00000507859.1_1_5:96121490-96126328:-|nuORF;ERAP1|p.T584Qfs*21|1|0.21|ENSG00000164307|chr5:96786479-96786479|T/-|frameshift_variant;ERAP1|p.T768Nfs*53|1|0.2|ENSG00000164307|chr5:96781837-96781838|-/GAAAT|frameshift_variant;ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1 ENST00000507859.1_1_5:96121490-96126328:-|nuORF ENST00000507859.1_1_5:96121490-96126328:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.718764 1079.42298 0.050985 2.7569E-05 -4.8912 -0.0026448 -4.8402 -0.0026172 540.7159836312364 96.187 0.41312 92.306 92.062 92.475 -3.881 0.065265 -0.00044588 NaN 21.747 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 832810 30817 5531 20565 20578 -0.11355953701445287 NEDNLDEYA 9 Unmodified _NEDNLDEYA_ 0 0 0 tr|U7T1T4|U7T1T4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00570PE=4SV=1 tr|U7T1T4|U7T1T4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00570PE=4SV=1 tr|U7T1T4|U7T1T4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00570PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2664794921875 2 541.717276 1081.42 NaN NaN NaN NaN NaN NaN NaN 83.088 1 83.088 82.588 83.588 0 0 0 0 0.23508 1 16198 16198 11.64 0.81637 1 30818 26329 20566 20579 30428 30428 -0.11745505554608826 NEDPGAYY 8 Unmodified _NEDPGAYY_ 0 0 0 REV__tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1 REV__tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2574462890625 2 464.68779 927.361027 0.34569 0.00016064 0.72059 0.00033485 1.0663 0.00049549 464.6880875195256 50.069 0.71794 50.069 49.653 50.371 0 24 20 2 0 0 0 0.99494 1 9527 9527 4.756 4.756 1 828080 + 30819 25091 20567 20580 30429 30429 -0.10555937058279596 NEDRISTTF 9 Unmodified _NEDRISTTF_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2606201171875 2 541.759278 1081.504 -0.011751 -6.366E-06 0.29725 0.00016104 0.2855 0.00015467 541.7593502545833 67.351 0.81121 67.351 66.978 67.79 0 51 22 3 0 0 0 0.00012336 1 13029 13029 125.04 71.462 1 16191000 30820 4612 20568 20581 30430 30430 -0.03348929667072298 NEDRISTTF 9 Unmodified _NEDRISTTF_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.258056640625 2 541.759278 1081.504 0.1049 5.6828E-05 0.21772 0.00011795 0.32262 0.00017478 541.7593055291086 70.575 0.81179 67.326 66.931 67.743 -3.2492 57 22 3 0 0 0 1.0636E-05 1 13747 13747 125.04 83.198 1 16497000 30821 4612 20568 20581 30431 30431 -0.03348929667072298 NEDRISTTF 9 Unmodified _NEDRISTTF_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2750244140625 2 541.759278 1081.504 0.3943 0.00021362 -0.0045535 -2.4669E-06 0.38975 0.00021115 541.7591859815394 70.973 0.80154 67.393 66.946 67.747 -3.5798 65 22 4 0 0 0 1.7343E-05 1 13384 13384 136.39 86.459 1 16063000 30822 4612 20568 20581 30432 30432 -0.03348929667072298 NEDRISTTF 9 Unmodified _NEDRISTTF_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2764282226562 2 541.759278 1081.504 0.43625 0.00023634 -0.095857 -5.1931E-05 0.34039 0.00018441 541.7591308365602 70.859 0.81496 67.392 66.988 67.803 -3.467 70 22 4 0 0 0 0.01376 1 13457 13457 117.76 75.921 1 22530000 30823 4612 20568 20581 30433 30433 -0.03348929667072298 NEDTLCCKR 9 Unmodified _NEDTLCCKR_ 0 0 0 REV__ENST00000448258.6_1_10:120867502-120877057:+|nuORF REV__ENST00000448258.6_1_10:120867502-120877057:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2655639648438 2 541.241883 1080.46921 NaN NaN NaN NaN NaN NaN NaN 107.27 1 107.27 106.77 107.77 0 0 0 0 0.23277 1 21091 21091 13.906 0 1 + 30824 15605 20569 20582 30434 30434 -0.06780212070998459 NEDTLCCKR 9 Unmodified _NEDTLCCKR_ 0 0 0 REV__ENST00000448258.6_1_10:120867502-120877057:+|nuORF REV__ENST00000448258.6_1_10:120867502-120877057:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2652587890625 2 541.241883 1080.46921 NaN NaN NaN NaN NaN NaN NaN 112.08 1 107.66 107.16 108.16 -4.4231 0 0 0 0.10202 1 22088 22088 37.974 5.1883 1 + 30825 15605 20569 20582 30435 30435 -0.06780212070998459 NEDTLCCKR 9 Unmodified _NEDTLCCKR_ 0 0 0 REV__ENST00000448258.6_1_10:120867502-120877057:+|nuORF REV__ENST00000448258.6_1_10:120867502-120877057:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2756958007812 2 541.241883 1080.46921 NaN NaN NaN NaN NaN NaN NaN 111.77 1 107.54 107.04 108.04 -4.2289 0 0 0 0.10202 1 21516 21516 37.974 5.6685 1 + 30826 15605 20569 20582 30436 30436 -0.06780212070998459 NEDTLCCKR 9 Unmodified _NEDTLCCKR_ 0 0 0 REV__ENST00000448258.6_1_10:120867502-120877057:+|nuORF REV__ENST00000448258.6_1_10:120867502-120877057:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2623291015625 2 541.241883 1080.46921 NaN NaN NaN NaN NaN NaN NaN 111.9 1 107.67 107.17 108.17 -4.2289 0 0 0 0.10202 1 21541 21541 37.974 0 1 + 30827 15605 20569 20582 30437 30437 -0.06780212070998459 NEDVVVLQ 8 Unmodified _NEDVVVLQ_ 0 0 0 REV__PRKAG1|p.R299Q|1|0.38|ENSG00000181929|chr12:49002999-49002999|C/T|missense_variant REV__PRKAG1|p.R299Q|1|0.38|ENSG00000181929|chr12:49002999-49002999|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2341613769531 2 458.242732 914.470912 -0.029793 -1.3653E-05 0.15914 7.2924E-05 0.12934 5.9271E-05 458.2427614944362 95.916 1.447 92.035 91.579 93.026 -3.881 86 41 3 0 0 0 8448 1 18583 18583 4.2837 2.5918 1 5856900 + 30828 24506 20570 20583 30438 30438 0.010254882809135779 NEEADPFNE 9 Unmodified _NEEADPFNE_ 0 0 0 REV__ENSG00000073910|ENST00000542859|FRY REV__ENSG00000073910|ENST00000542859|FRY MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2827758789062 2 532.711993 1063.40943 0.70727 0.00037677 -2.3253 -0.0012387 -1.6181 -0.00086197 532.7113802455996 91.351 0.13156 87.257 87.161 87.293 -4.0946 5 3 2 0 0 0 0.71142 1 17409 17409 5.7319 0.50118 1 309140 + 30829 14307 20571 20584 30439 30439 -0.11973488209014249 NEEESVCSDPA 11 Unmodified _NEEESVCSDPA_ 0 0 0 REV__RRP15|p.R9C|1|0.33|ENSG00000067533|chr1:218285341-218285341|C/T|missense_variant REV__RRP15|p.R9C|1|0.33|ENSG00000067533|chr1:218285341-218285341|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.265625 2 590.22715 1178.43975 NaN NaN NaN NaN NaN NaN NaN 155.68 1 150.43 149.93 150.93 -5.2526 0 0 0 0.22632 1 30191 30191 0.58532 0.17705 1 + 30830 24582 20572 20585 30440 30440 -0.1423349760614201 NEEEVKMM 8 Unmodified _NEEEVKMM_ 0 0 0 ENST00000444025.1_1_7:23602816-23603164:-|nuORF ENST00000444025.1_1_7:23602816-23603164:-|nuORF ENST00000444025.1_1_7:23602816-23603164:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.8142395019531 3 337.149149 1008.42562 -0.49507 -0.00016691 0.45305 0.00015275 -0.042023 -1.4168E-05 337.14929772245364 54.239 2.303 51.355 50.908 53.211 -2.8837 146 66 3 0 0 0 0.87133 1 10588 10588 0.063987 0 1 14399000 30831 9920 20573 20586 30441 30441 -0.07825821568121683 NEEEVKMM 8 Unmodified _NEEEVKMM_ 0 0 0 ENST00000444025.1_1_7:23602816-23603164:-|nuORF ENST00000444025.1_1_7:23602816-23603164:-|nuORF ENST00000444025.1_1_7:23602816-23603164:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 337.149149 1008.42562 -0.29362 -9.8993E-05 0.40398 0.0001362 0.11036 3.7208E-05 337.14925884898975 51.456 2.0158 51.456 51.022 53.038 0 0.08163 -8.8343E-05 NaN 0.063987 124 56 3 NaN NaN NaN NaN 0 NaN NaN 0 11764000 30832 9920 20573 20586 -0.07825821568121683 NEEEVKMM 8 Unmodified _NEEEVKMM_ 0 0 0 ENST00000444025.1_1_7:23602816-23603164:-|nuORF ENST00000444025.1_1_7:23602816-23603164:-|nuORF ENST00000444025.1_1_7:23602816-23603164:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 337.149149 1008.42562 0.061996 2.0902E-05 0.33424 0.00011269 0.39624 0.00013359 337.1491454029694 54.294 2.2021 51.159 50.835 53.037 -3.1352 -0.21613 -0.00015888 NaN 0.063987 85 62 3 NaN NaN NaN NaN 0 NaN NaN 0 9758400 30833 9920 20573 20586 -0.07825821568121683 NEEIQTVF 8 Unmodified _NEEIQTVF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27642822265625 2 490.24019 978.465826 0.17464 8.5614E-05 0.67371 0.00033028 0.84834 0.00041589 490.2404993212459 113.28 0.89846 113.28 112.83 113.73 0 42 25 3 0 0 0 0.97174 1 22309 22309 13.906 4.5586 1 4742700 30834 2071 20574 20587 30442 30442 -0.024268155817139814 NEEIQTVF 8 Unmodified _NEEIQTVF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2762756347656 2 490.24019 978.465826 0.30971 0.00015183 0.3637 0.0001783 0.67341 0.00033013 490.24025513250456 117.88 0.76665 113.38 113 113.77 -4.502 33 21 2 0 0 0 0.70215 1 23205 23205 22.736 8.8302 1 6664600 30835 2071 20574 20587 30443 30443 -0.024268155817139814 NEEIQTVF 8 Unmodified _NEEIQTVF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2764892578125 2 490.24019 978.465826 0.204 0.00010001 0.51391 0.00025194 0.7179 0.00035195 490.2403999226248 117.76 0.96396 113.35 112.89 113.86 -4.4088 36 26 2 0 0 0 0.59076 1 22625 22625 22.736 1.8651 1 5095300 30836 2071 20574 20587 30444 30444 -0.024268155817139814 NEEIQTVF 8 Unmodified _NEEIQTVF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.24019 978.465826 0.52403 0.0002569 0.16568 8.1222E-05 0.6897 0.00033812 490.24017135547354 118.05 0.75067 113.44 112.99 113.74 -4.6106 0.079995 -0.0002516 NaN 22.736 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 4311300 30837 2071 20574 20587 -0.024268155817139814 NEEIVGLAA 9 Unmodified _NEEIVGLAA_ 0 0 0 ENST00000493178.1_1_10:14880401-14883177:+|nuORF;HSPA14|p.N95Mfs*8|2|0.47|ENSG00000187522|chr10:14848797-14848797|A/-|frameshift_variant;ENSG00000187522|ENST00000378372|HSPA14 ENST00000493178.1_1_10:14880401-14883177:+|nuORF ENST00000493178.1_1_10:14880401-14883177:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2343444824219 2 458.242732 914.470912 0.011611 5.3209E-06 1.3672 0.00062653 1.3789 0.00063185 458.24324344545846 105.9 0.6331 101.53 101.22 101.86 -4.3764 28 17 2 0 0 0 0.10043 1 20330 20330 22.621 16.752 1 2298900 30838 7109 20575 20588 30445 30445 0.010254882809135779 NEEKCEQY 8 Unmodified _NEEKCEQY_ 0 0 0 REV__KCNS3|p.R124C|1|0.23|ENSG00000170745|chr2:17931378-17931378|C/T|missense_variant REV__KCNS3|p.R124C|1|0.23|ENSG00000170745|chr2:17931378-17931378|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2761840820312 2 521.710939 1041.40732 0.25169 0.00013131 0.32031 0.00016711 0.57199 0.00029841 521.7111370290543 36.454 0.56657 36.454 36.213 36.779 0 28 15 3 0 0 0 0.95515 1 6699 6699 6.7232 5.3936 1 8424200 + 30839 23705 20576 20589 30446 30446 -0.11172240218502338 NEEKDIKVYQL 11 Unmodified _NEEKDIKVYQL_ 0 0 0 REV__nc|ENSG00000150676|Q8IWF9-3|CCDC83 REV__nc|ENSG00000150676|Q8IWF9-3|CCDC83 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.246337890625 3 460.245275 1377.714 -0.12304 -5.6627E-05 -0.40711 -0.00018737 -0.53015 -0.000244 460.2462186446087 23.066 0.34448 21.612 21.473 21.818 -1.4535 24 9 4 0 0 0 0.73684 1 3713 3713 9.2438 0.49199 1 701860 + 30840 17040 20577 20590 30447 30447 0.04024688215281458 NEELAGAGRVA 11 Unmodified _NEELAGAGRVA_ 0 0 0 nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1 nc|ENSG00000198171|Q96HY6-2|DDRGK1 nc|ENSG00000198171|Q96HY6-2|DDRGK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7806396484375 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 41.056 1 41.056 40.556 41.556 0 0 0 0 0.087741 1 7651 7651 37.771 11.503 1 30841 7434 20578 20591 30448 30448 0.00718465461204687 NEELAGAGRVA 11 Unmodified _NEELAGAGRVA_ 0 0 0 nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1 nc|ENSG00000198171|Q96HY6-2|DDRGK1 nc|ENSG00000198171|Q96HY6-2|DDRGK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78125 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 43.921 1 41.131 40.631 41.631 -2.79 0 0 0 0.092223 1 8240 8240 37.075 4.289 1 30842 7434 20578 20591 30449 30449 0.00718465461204687 NEELAGAGRVA 11 Unmodified _NEELAGAGRVA_ 0 0 0 nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1 nc|ENSG00000198171|Q96HY6-2|DDRGK1 nc|ENSG00000198171|Q96HY6-2|DDRGK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7702026367188 2 543.780544 1085.54654 -0.023335 -1.2689E-05 -0.10307 -5.6048E-05 -0.12641 -6.8737E-05 543.7802177671382 43.561 0.63787 40.795 40.685 41.323 -2.7661 21 17 2 0 0 0 0.4665 1 7960 7960 24.882 4.467 1 893470 30843 7434 20578 20591 30450 30450 0.00718465461204687 NEELKKNEEMN 11 Unmodified _NEELKKNEEMN_ 0 0 0 REV__nc|ENSG00000170017|Q13740-4|ALCAM REV__nc|ENSG00000170017|Q13740-4|ALCAM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2277526855469 3 459.882008 1376.62419 0.66205 0.00030446 0.13218 6.0785E-05 0.79422 0.00036525 459.8813820647672 23.083 0.49573 21.529 21.304 21.799 -1.5532 17 13 2 0 0 0 0.72919 1 3924 3924 9.7643 0 1 336070 + 30844 18137 20579 20592 30451 30451 -0.049053094556029464 NEEPKVATA 9 Unmodified _NEEPKVATA_ 0 0 0 nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;EIF2A|p.I537Sfs*4|1|0.78|ENSG00000144895|chr3:150581723-150581723|A/-|frameshift_variant;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-2|EIF2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2497863769531 2 479.745639 957.476725 0.78172 0.00037503 -0.82726 -0.00039687 -0.045541 -2.1848E-05 479.7451897440349 23.138 0.56436 21.585 21.269 21.834 -1.5532 47 15 4 0 0 0 0.52396 2 3951 3951;3986 18.146 3.3081 1 11131000 30845 926 20580 20593 30452;30453 30452 -0.003714132074264853 NEEPKVATA 9 Unmodified _NEEPKVATA_ 0 0 0 nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;EIF2A|p.I537Sfs*4|1|0.78|ENSG00000144895|chr3:150581723-150581723|A/-|frameshift_variant;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-2|EIF2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2489318847656 2 479.745639 957.476725 -0.064925 -3.1148E-05 0.027441 1.3165E-05 -0.037485 -1.7983E-05 479.74560255083315 23.052 0.62807 21.598 21.26 21.888 -1.4535 47 17 4 0 0 0 0.52396 1 3714 3714 18.146 3.3081 1 12150000 30846 926 20580 20593 30454 30454 -0.003714132074264853 NEEPKVATA 9 Unmodified _NEEPKVATA_ 0 0 0 nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;EIF2A|p.I537Sfs*4|1|0.78|ENSG00000144895|chr3:150581723-150581723|A/-|frameshift_variant;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-2|EIF2A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 479.745639 957.476725 -0.46706 -0.00022407 0.38694 0.00018563 -0.080113 -3.8434E-05 479.74574540967814 23.328 0.58712 21.539 21.223 21.81 -1.7886 -0.034774 0.00049551 NaN 18.146 42 16 3 NaN NaN NaN NaN 0 NaN NaN 0 7764100 30847 926 20580 20593 -0.003714132074264853 NEEQIHKF 8 Unmodified _NEEQIHKF_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2807006835938 2 522.759081 1043.50361 0.5667 0.00029625 -0.57078 -0.00029838 -0.0040812 -2.1335E-06 522.7585882035588 31.015 0.28199 28.941 28.779 29.061 -2.0743 10 7 2 0 0 0 0.9383 1 5319 5319 5.7319 0 1 520800 30848 6863 20581 20594 30455 30455 -0.01640304596230635 NEERFLNNSG 10 Unmodified _NEERFLNNSG_ 0 0 0 ENST00000420752.1_1_10:50980319-50981214:+|nuORF ENST00000420752.1_1_10:50980319-50981214:+|nuORF ENST00000420752.1_1_10:50980319-50981214:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.27490234375 2 590.273084 1178.53161 NaN NaN NaN NaN NaN NaN NaN 55.504 1 52.35 51.85 52.85 -3.1544 0 0 0 0.17567 1 10261 10261 32.786 0 1 30849 9662 20582 20595 30456 30456 -0.05051026406817982 NEESEQPP 8 Unmodified _NEESEQPP_ 0 0 0 ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant;nc|ENSG00000125257|O15439-3|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4 ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2582092285156 2 465.195979 928.377405 -0.042817 -1.9918E-05 -0.38574 -0.00017944 -0.42855 -0.00019936 465.19575070051513 53.644 0.51752 50.549 50.272 50.79 -3.0954 21 14 2 0 0 0 1.0147 1 9880 9880 2.3027 0 1 1524400 30850 18 20583 20596 30457 30457 -0.08964855892179457 NEESRLTA 8 Unmodified _NEESRLTA_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93;ENST00000460781.1_1_2:118709253-118753033:-|nuORF ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2405090332031 2 460.227613 918.440674 NaN NaN NaN NaN NaN NaN NaN 21.395 1 21.395 20.895 21.895 0 0 0 0 0.20895 1 3579 3579 23.148 0 1 30851 3370 20584 20597 30458 30458 -0.02180870384302125 NEETVVLKTF 10 Unmodified _NEETVVLKTF_ 0 0 0 ZNF7|p.P160L|1|0.69|ENSG00000147789|chr8:144841586-144841586|C/T|missense_variant ZNF7|p.P160L|1|0.69|ENSG00000147789|chr8:144841586-144841586|C/T|missense_variant ZNF7|p.P160L|1|0.69|ENSG00000147789|chr8:144841586-144841586|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2493896484375 2 590.316428 1178.6183 0.53632 0.0003166 1.6298 0.00096211 2.1661 0.0012787 590.3175630731896 145.41 0.17133 140.74 140.62 140.79 -4.6694 5 4 2 0 0 0 0.871 1 28804 28804 3.2813 0 1 1256300 30852 26635 20585 20598 30459 30459 0.03613960095049151 NEFAEQSH 8 Unmodified _NEFAEQSH_ 0 0 0 REV__HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant REV__HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.236083984375 2 481.204138 960.393724 NaN NaN NaN NaN NaN NaN NaN 46.73 1 43.864 43.364 44.364 -2.8666 0 0 0 0.20294 1 8512 8512 23.148 2.6948 1 + 30853 16018 20586 20599 30460 30460 -0.08805729935420459 NEFCNRSSH 9 Unmodified _NEFCNRSSH_ 0 0 0 RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant;nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17;nc|ENSG00000132972|Q9BXT8-1|RNF17 RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7828979492188 2 547.227622 1092.44069 0.16637 9.1041E-05 0.3587 0.00019629 0.52506 0.00028733 547.2277157183756 84.237 0.17461 80.573 80.433 80.607 -3.6641 5 4 2 0 0 0 0.6329 1 16445 16445 10.824 1.4765 1 574310 30854 3775 20587 20600 30461 30461 -0.10183193655939249 NEFDIVLLCL 10 Unmodified _NEFDIVLLCL_ 0 0 0 REV__ENST00000375429.7_1_6:31922634-31922667:-|nuORF REV__ENST00000375429.7_1_6:31922634-31922667:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2705078125 2 589.809925 1177.6053 0.21207 0.00012508 3.2664 0.0019265 3.4784 0.0020516 589.8119079737 110.15 0.10043 105.7 105.63 105.73 -4.4518 4 2 2 0 0 0 0.87854 1 21125 21125 9.3831 0 1 820150 + 30855 21063 20588 20601 30462 30462 0.023598057113304094 NEFDRTIAE 9 Unmodified _NEFDRTIAE_ 0 0 0 ENSG00000176101|ENST00000322310|SSNA1;ENST00000459860.1_1_9:140083297-140084363:+|nuORF ENSG00000176101|ENST00000322310|SSNA1 ENSG00000176101|ENST00000322310|SSNA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7833862304688 2 547.759278 1093.504 0.075139 4.1158E-05 0.11763 6.4434E-05 0.19277 0.00010559 547.7592870105592 57.692 0.72558 57.692 57.343 58.068 0 46 20 3 0 0 0 0.50174 1 10995 10995 40.725 14.457 1 6708400 30856 6447 20589 20602 30463 30463 -0.03900929667042874 NEFDRTIAE 9 Unmodified _NEFDRTIAE_ 0 0 0 ENSG00000176101|ENST00000322310|SSNA1;ENST00000459860.1_1_9:140083297-140084363:+|nuORF ENSG00000176101|ENST00000322310|SSNA1 ENSG00000176101|ENST00000322310|SSNA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7708740234375 2 547.759278 1093.504 0.19761 0.00010824 0.21218 0.00011622 0.40979 0.00022447 547.7593039287107 60.842 0.65771 57.908 57.51 58.168 -2.9333 43 18 3 0 0 0 0.076312 1 11754 11754 62.869 22.919 1 9879300 30857 6447 20589 20602 30464 30464 -0.03900929667042874 NEFDRTIAE 9 Unmodified _NEFDRTIAE_ 0 0 0 ENSG00000176101|ENST00000322310|SSNA1;ENST00000459860.1_1_9:140083297-140084363:+|nuORF ENSG00000176101|ENST00000322310|SSNA1 ENSG00000176101|ENST00000322310|SSNA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7781982421875 2 547.759278 1093.504 0.12243 6.706E-05 0.23973 0.00013132 0.36216 0.00019837 547.7593030060084 61.242 0.77746 57.873 57.442 58.219 -3.3694 45 21 3 0 0 0 1.5942E-07 1 11430 11430 147.24 80.784 1 8975100 30858 6447 20589 20602 30465 30465 -0.03900929667042874 NEFDRTIAE 9 Unmodified _NEFDRTIAE_ 0 0 0 ENSG00000176101|ENST00000322310|SSNA1;ENST00000459860.1_1_9:140083297-140084363:+|nuORF ENSG00000176101|ENST00000322310|SSNA1 ENSG00000176101|ENST00000322310|SSNA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77197265625 2 547.759278 1093.504 0.2501 0.000137 0.099522 5.4514E-05 0.34962 0.00019151 547.7592883942569 61.02 0.55799 57.791 57.556 58.114 -3.2288 40 15 3 0 0 0 0.023874 1 11456 11456 88.364 40.615 1 9026700 30859 6447 20589 20602 30466 30466 -0.03900929667042874 NEFEATQKL 9 Unmodified _NEFEATQKL_ 0 0 0 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27490234375 2 540.272021 1078.52949 -0.046502 -2.5124E-05 0.097715 5.2793E-05 0.051213 2.7669E-05 540.2720117662989 66.593 1.1617 66.593 66.172 67.333 0 101 32 5 0 0 0 0.050063 4 12848 12798;12848;12892;12944 86.332 36.399 1 140940000 30860 5589 20590 20603 30467;30468;30469;30470 30468 -0.006634551446268233 NEFEATQKL 9 Unmodified _NEFEATQKL_ 0 0 0 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27490234375 2 540.272021 1078.52949 0.10046 5.4275E-05 -0.16644 -8.9922E-05 -0.065979 -3.5647E-05 540.2719203766894 69.779 1.2727 66.599 65.798 67.071 -3.1796 106 35 5 0 0 0 0.050063 5 13576 13518;13522;13576;13626;13653 86.332 61.97 1 139400000 30861 5589 20590 20603 30471;30472;30473;30474;30475 30473 -0.006634551446268233 NEFEATQKL 9 Unmodified _NEFEATQKL_ 0 0 0 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2747802734375 2 540.272021 1078.52949 0.48226 0.00026055 -0.40862 -0.00022077 0.073635 3.9783E-05 540.2717172850427 70.214 1.0878 66.634 66.21 67.298 -3.5798 97 30 5 0 0 0 0.076312 1 13187 13187 76.825 36.875 1 100500000 30862 5589 20590 20603 30476 30476 -0.006634551446268233 NEFEATQKL 9 Unmodified _NEFEATQKL_ 0 0 0 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2749633789062 2 540.272021 1078.52949 0.42458 0.00022939 -0.37829 -0.00020438 0.046291 2.501E-05 540.2717508544434 70.083 1.3036 66.616 66.182 67.486 -3.467 107 36 5 0 0 0 0.031986 2 13261 13261;13313 96.367 46.434 1 92739000 30863 5589 20590 20603 30477;30478 30477 -0.006634551446268233 NEFEQWITH 9 Unmodified _NEFEQWITH_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2754516601562 2 602.275095 1202.53564 0.99569 0.00059968 -0.662 -0.00039871 0.33369 0.00020097 602.2743474537559 131.15 0.50557 126.52 126.28 126.79 -4.6359 22 13 2 0 0 0 0.051332 3 25867 25818;25819;25867 70.332 46.542 1 1613400 30864 5117 20591 20604 30479;30480;30481 30481 -0.05752936913108897 NEFEQWITH 9 Unmodified _NEFEQWITH_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2750244140625 2 602.275095 1202.53564 0.38267 0.00023047 -0.038753 -2.334E-05 0.34391 0.00020713 602.2751557388827 131.45 0.51482 126.59 126.22 126.74 -4.8527 21 14 2 0 0 0 0.02633 2 25212 25212;25257 85.642 59.373 1 1632100 30865 5117 20591 20604 30482;30483 30482 -0.05752936913108897 NEFEQWITH 9 Unmodified _NEFEQWITH_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2979736328125 2 602.275095 1202.53564 0.26179 0.00015767 1.246 0.00075045 1.5078 0.00090812 602.2756393301163 131.28 0.45941 126.51 126.25 126.71 -4.7725 18 12 2 0 0 0 0.051332 3 25231 25231;25269;25307 70.332 46.542 1 1734600 30866 5117 20591 20604 30484;30485;30486 30484 -0.05752936913108897 NEFFVYYI 8 Unmodified _NEFFVYYI_ 0 0 0 REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.766357421875 2 547.7633 1093.51205 NaN NaN NaN NaN NaN NaN NaN 70.141 1 66.674 66.174 67.174 -3.467 0 0 0 0.19954 1 13280 13280 24.674 2.2213 1 + 30867 18410 20592 20605 30487 30487 -0.030967506796287125 NEFHFNIY 8 Unmodified _NEFHFNIY_ 0 0 0 nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14 nc|ENSG00000151364|Q9BQ13-2|KCTD14 nc|ENSG00000151364|Q9BQ13-2|KCTD14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 542.288330078125 2 542.248349 1082.48214 0.29712 0.00016111 -0.15892 -8.6174E-05 0.1382 7.4937E-05 542.2481563858333 144.82 0.87096 140.15 139.68 140.55 -4.6694 49 24 3 0 0 0 0.49114 1 28737 28737 28.487 7.6156 1 11670000 30868 4863 20593 20606 30488 30488 -0.055796896249376005 NEFHFNIY 8 Unmodified _NEFHFNIY_ 0 0 0 nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14 nc|ENSG00000151364|Q9BQ13-2|KCTD14 nc|ENSG00000151364|Q9BQ13-2|KCTD14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.248349 1082.48214 0.3332 0.00018068 -0.11822 -6.4104E-05 0.21498 0.00011657 542.2481894929332 140.04 0.7272 140.04 139.61 140.34 0 -0.041553 -9.8095E-06 NaN 28.487 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 11405000 30869 4863 20593 20606 -0.055796896249376005 NEFHFNIY 8 Unmodified _NEFHFNIY_ 0 0 0 nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14 nc|ENSG00000151364|Q9BQ13-2|KCTD14 nc|ENSG00000151364|Q9BQ13-2|KCTD14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.248349 1082.48214 0.13381 7.2559E-05 0.074297 4.0287E-05 0.20811 0.00011285 542.248362519627 145.18 0.82724 140.11 139.76 140.59 -5.0671 0.035355 0.00019897 NaN 28.487 37 23 2 NaN NaN NaN NaN 0 NaN NaN 0 10243000 30870 4863 20593 20606 -0.055796896249376005 NEFHFNIY 8 Unmodified _NEFHFNIY_ 0 0 0 nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14 nc|ENSG00000151364|Q9BQ13-2|KCTD14 nc|ENSG00000151364|Q9BQ13-2|KCTD14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.248349 1082.48214 0.39265 0.00021291 -0.20235 -0.00010972 0.1903 0.00010319 542.2480894770877 144.96 0.8618 140.02 139.62 140.48 -4.9445 -0.061166 -0.00010105 NaN 28.487 41 24 2 NaN NaN NaN NaN 0 NaN NaN 0 10347000 30871 4863 20593 20606 -0.055796896249376005 NEFKKGSAY 9 Unmodified _NEFKKGSAY_ 0 0 0 REV__ENSG00000104941|ENST00000221538|RSPH6A REV__ENSG00000104941|ENST00000221538|RSPH6A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.280517578125 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 78.043 1 74.385 73.885 74.885 -3.6588 0 0 0 0.23277 1 14865 14865 13.906 1.3745 1 + 30872 14952 20594 20607 30489 30489 -0.011194204534604069 NEFPEPIKL 9 Unmodified _NEFPEPIKL_ 0 0 0 ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.796142578125 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 145.34 1 140.67 140.17 141.17 -4.6694 0 0 0 0.13259 1 28810 28810 32.786 11.249 1 30873 1527 20595 20608 30490 30490 0.036346097574551095 NEFPEPIKL 9 Unmodified _NEFPEPIKL_ 0 0 0 ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7756958007812 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 145.39 1 140.72 140.22 141.22 -4.6694 0 0 0 0.13259 1 28821 28821 32.786 10.049 1 30874 1527 20595 20608 30491 30491 0.036346097574551095 NEFPEPIKL 9 Unmodified _NEFPEPIKL_ 0 0 0 ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.793701171875 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 145.63 1 140.96 140.46 141.46 -4.6694 0 0 0 0.10991 1 28869 28869 36.506 8.8774 1 30875 1527 20595 20608 30492 30492 0.036346097574551095 NEFPEPIKL 9 Unmodified _NEFPEPIKL_ 0 0 0 ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7965087890625 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 145.84 1 140.73 140.23 141.23 -5.1108 0 0 0 0.13259 1 28195 28195 32.786 5.1569 1 30876 1527 20595 20608 30493 30493 0.036346097574551095 NEFPEPIKL 9 Unmodified _NEFPEPIKL_ 0 0 0 ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7727661132812 2 543.795132 1085.57571 0.12744 6.9301E-05 1.0844 0.00058969 1.2118 0.00065899 544.2967106239322 145.79 0.17242 140.68 140.58 140.76 -5.1108 10 4 4 0 0 0 0.60663 1 28163 28163 32.786 10.049 1 1488300 30877 1527 20595 20608 30494 30494 0.036346097574551095 NEFRFSQV 8 Unmodified _NEFRFSQV_ 0 0 0 ENSG00000110881|ENST00000447966|ASIC1;nc|ENSG00000110881|P78348-1|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 514.2654418945312 2 513.753798 1025.49304 -0.1177 -6.047E-05 -0.033887 -1.7409E-05 -0.15159 -7.788E-05 513.7537593322364 98.881 0.55222 94.749 94.44 94.992 -4.1326 33 15 3 0 0 0 8448 1 19420 19420 33.593 13.967 1 3808800 30878 2595 20596 20609 30495 30495 -0.01868287250681533 NEFRFSQV 8 Unmodified _NEFRFSQV_ 0 0 0 ENSG00000110881|ENST00000447966|ASIC1;nc|ENSG00000110881|P78348-1|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 513.753798 1025.49304 -0.014805 -7.6061E-06 -0.15243 -7.8312E-05 -0.16724 -8.5919E-05 513.7536773913973 94.773 0.48595 94.773 94.522 95.008 0 0.031836 -0.00018227 NaN 33.593 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1680300 30879 2595 20596 20609 -0.01868287250681533 NEFRFSQV 8 Unmodified _NEFRFSQV_ 0 0 0 ENSG00000110881|ENST00000447966|ASIC1;nc|ENSG00000110881|P78348-1|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 513.753798 1025.49304 -0.30268 -0.0001555 0.30501 0.0001567 0.0023308 1.1975E-06 513.7538615107958 99.038 0.4862 94.768 94.477 94.963 -4.2692 0.026715 0.00028775 NaN 33.593 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2817000 30880 2595 20596 20609 -0.01868287250681533 NEFRFSQV 8 Unmodified _NEFRFSQV_ 0 0 0 ENSG00000110881|ENST00000447966|ASIC1;nc|ENSG00000110881|P78348-1|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 513.753798 1025.49304 0.11646 5.9834E-05 -0.055575 -2.8552E-05 0.060889 3.1282E-05 513.7537163260846 98.632 0.63968 94.676 94.364 95.003 -3.9564 -0.065751 -8.2749E-05 NaN 33.593 35 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3485900 30881 2595 20596 20609 -0.01868287250681533 NEFSLVNV 8 Unmodified _NEFSLVNV_ 0 0 0 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.54156494140625 2 461.23745 920.460347 -0.4693 -0.00021646 -0.7083 -0.00032669 -1.1776 -0.00054315 461.2372805881515 106.81 1.2533 102.55 101.9 103.16 -4.2638 50 35 2 0 0 0 0.97888 1 21053 21053 18.146 1.2041 1 1919400 30882 5129 20597 20610 30496 30496 -0.0030649437351257802 NEFSLVNV 8 Unmodified _NEFSLVNV_ 0 0 0 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.23745 920.460347 0.60311 0.00027818 -2.0708 -0.00095512 -1.4677 -0.00067694 461.236637724551 102.49 1.2825 102.49 101.92 103.2 0 -0.034387 -0.00032116 NaN 18.146 48 36 2 NaN NaN NaN NaN 0 NaN NaN 0 2054200 30883 5129 20597 20610 -0.0030649437351257802 NEFSLVNV 8 Unmodified _NEFSLVNV_ 0 0 0 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.23745 920.460347 -0.049753 -2.2948E-05 -1.9637 -0.00090573 -2.0134 -0.00092868 461.2365990817315 106.94 1.1363 102.52 101.92 103.06 -4.4121 0.0045572 -0.00022238 NaN 18.146 56 32 3 NaN NaN NaN NaN 0 NaN NaN 0 2648200 30884 5129 20597 20610 -0.0030649437351257802 NEFSVNNGY 9 Unmodified _NEFSVNNGY_ 0 0 0 nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2815551757812 2 522.225071 1042.43559 NaN NaN NaN NaN NaN NaN NaN 73.948 1 73.948 73.448 74.448 0 0 0 0 0.23277 1 14350 14350 13.906 5.9959 1 30885 2586 20598 20611 30497 30497 -0.08393174246884882 NEFSVNNGY 9 Unmodified _NEFSVNNGY_ 0 0 0 nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2626342773438 2 522.225071 1042.43559 NaN NaN NaN NaN NaN NaN NaN 74.011 1 74.011 73.511 74.511 0 0 0 0 0.18489 1 14364 14364 19.626 18.999 1 30886 2586 20598 20611 30498 30498 -0.08393174246884882 NEFSVNNGY 9 Unmodified _NEFSVNNGY_ 0 0 0 nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.280029296875 2 522.225071 1042.43559 -0.21639 -0.000113 0.089295 4.6632E-05 -0.12709 -6.6372E-05 522.7265607929245 77.981 0.56498 74.518 74.217 74.782 -3.4633 19 15 2 0 0 0 0.87634 1 15210 15210 6.7232 0.96273 1 901190 30887 2586 20598 20611 30499 30499 -0.08393174246884882 NEFSVNNGY 9 Unmodified _NEFSVNNGY_ 0 0 0 nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.280517578125 2 522.225071 1042.43559 0.077523 4.0485E-05 -0.23941 -0.00012503 -0.16189 -8.4544E-05 522.2249964372602 78.227 0.67077 74.568 74.129 74.8 -3.6588 25 18 2 0 0 0 0.71527 1 14865 14865 25.399 12.868 1 1079100 30888 2586 20598 20611 30500 30500 -0.08393174246884882 NEFTTHVM 8 Unmodified _NEFTTHVM_ 0 0 0 ENST00000478678.5_1_6:32154995-32157692:-|nuORF;ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000185630|P40424-2|PBX1;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENSG00000167081|ENST00000373489|PBX3 ENST00000478678.5_1_6:32154995-32157692:-|nuORF ENST00000478678.5_1_6:32154995-32157692:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26788330078125 2 489.72111 977.427666 -0.006325 -3.0975E-06 -0.30154 -0.00014767 -0.30786 -0.00015077 489.72113388312465 75.694 1.1062 72.06 71.643 72.749 -3.6337 114 31 5 0 0 0 2.6516E-07 1 14376 14376 133.7 82.847 1 57999000 30889 10325 20599 20612 30501 30501 -0.0619502476802154 NEGAQFLGA 9 Unmodified _NEGAQFLGA_ 0 0 0 USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 907.4342651367188 1 906.431572 905.424296 0.29076 0.00026355 -0.035764 -3.2418E-05 0.25499 0.00023114 906.4315217404313 54.116 0.55462 50.981 50.626 51.181 -3.1352 25 15 2 0 0 0 0.34411 1 9987 9987 29.082 6.3453 1 5486900 30890 1204 20600 20613 30502 30502 -0.032199515503748444 NEGAQFLGA 9 Unmodified _NEGAQFLGA_ 0 0 0 USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 906.431572 905.424296 0.66768 0.0006052 0.35244 0.00031946 1.0201 0.00092467 906.4319791388181 51.132 0.79871 51.132 50.471 51.27 0 0.094033 0.00024451 NaN 29.082 33 22 2 NaN NaN NaN NaN 0 NaN NaN 0 3581000 30891 1204 20600 20613 -0.032199515503748444 NEGAQFLGA 9 Unmodified _NEGAQFLGA_ 0 0 0 USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 906.431572 905.424296 -0.018571 -1.6833E-05 0.12732 0.00011541 0.10875 9.8577E-05 906.4318085456836 53.914 0.5885 51.03 50.595 51.183 -2.8837 -0.0081182 4.0454E-05 NaN 29.082 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 5338600 30892 1204 20600 20613 -0.032199515503748444 NEGAQFLGA 9 Unmodified _NEGAQFLGA_ 0 0 0 USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 906.431572 905.424296 0.1057 9.581E-05 0.063932 5.795E-05 0.16963 0.00015376 906.4317979508006 54.147 0.63098 51.009 50.536 51.167 -3.1377 -0.028798 -1.7007E-05 NaN 29.082 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 6584500 30893 1204 20600 20613 -0.032199515503748444 NEGSWNSY 8 Unmodified _NEGSWNSY_ 0 0 0 ENST00000578861.5_1_17:46189455-46190154:+|nuORF;ENST00000577310.1_1_17:46189938-46190764:+|nuORF;nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11 ENST00000578861.5_1_17:46189455-46190154:+|nuORF ENST00000578861.5_1_17:46189455-46190154:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74261474609375 2 478.690864 955.367175 0.093525 4.4769E-05 -3.996 -0.0019129 -3.9025 -0.0018681 478.68880549037885 146.75 0.41473 142.07 141.84 142.26 -4.6868 19 11 2 0 0 0 0.66265 1 29070 29070 18.135 5.6034 1 2588900 30894 966 20601 20614 30503 30503 -0.1122941882675832 NEGVIIIGA 9 Unmodified _NEGVIIIGA_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 885.4201049804688 1 885.504009 884.496732 0.55556 0.00049195 -0.21074 -0.00018661 0.34482 0.00030534 885.503798604141 125.53 0.87627 120.76 120.34 121.21 -4.7681 57 24 3 0 0 0 0.045725 1 24040 24040 72.968 1.0457 1 11690000 30895 4036 20602 20615 30504 30504 0.04986382523202337 NEGVIIIGA 9 Unmodified _NEGVIIIGA_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 885.504009 884.496732 0.50697 0.00044892 -0.35237 -0.00031203 0.15459 0.00013689 885.5036714396703 120.81 0.79082 120.81 120.39 121.18 0 0.026812 -0.00010577 NaN 72.968 39 21 2 NaN NaN NaN NaN 0 NaN NaN 0 10758000 30896 4036 20602 20615 0.04986382523202337 NEGVIIIGA 9 Unmodified _NEGVIIIGA_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 885.504009 884.496732 0.40191 0.00035589 -0.18626 -0.00016493 0.21565 0.00019096 885.5038073216399 125.31 0.85707 120.71 120.3 121.15 -4.5984 -0.077369 4.1329E-05 NaN 72.968 53 23 3 NaN NaN NaN NaN 0 NaN NaN 0 10914000 30897 4036 20602 20615 0.04986382523202337 NEGVIIIGA 9 Unmodified _NEGVIIIGA_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 885.504009 884.496732 0.37044 0.00032803 -0.15134 -0.00013401 0.21911 0.00019402 885.5038310115382 125.51 0.94801 120.86 120.35 121.3 -4.6495 0.076288 7.2253E-05 NaN 72.968 54 26 3 NaN NaN NaN NaN 0 NaN NaN 0 10819000 30898 4036 20602 20615 0.04986382523202337 NEGVYGTYIY 10 Unmodified _NEGVYGTYIY_ 0 0 0 tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1 tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1 tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.251953125 2 589.771854 1177.52915 0.19798 0.00011676 -0.28344 -0.00016717 -0.085461 -5.0402E-05 590.2723992714704 132.08 0.16925 127.28 127.18 127.35 -4.799 5 4 2 0 0 0 0.87854 1 25434 25434 2.9952 0 1 1282100 30899 26056 20603 20616 30505 30505 -0.052508748644640946 NEGWTSLL 8 Unmodified _NEGWTSLL_ 0 0 0 GALNTL6|p.I294Sfs*41|1|0.28|ENSG00000174473|chr4:172813676-172813676|C/-|frameshift_variant;GALNTL6|p.V375Kfs*20|1|0.04|ENSG00000174473|chr4:172931240-172931241|-/GAAAGGAATAATC|frameshift_variant;GALNTL6|p.E457Gfs*33|1|0.2|ENSG00000174473|chr4:172952250-172952251|-/G|frameshift_variant;GALNTL6|p.R515Gfs*22|1|0.21|ENSG00000174473|chr4:173021528-173021528|C/-|frameshift_variant;nc|ENSG00000174473|Q49A17-2|GALNTL6;ENSG00000174473|ENST00000506823|GALNTL6 GALNTL6|p.I294Sfs*41|1|0.28|ENSG00000174473|chr4:172813676-172813676|C/-|frameshift_variant GALNTL6|p.I294Sfs*41|1|0.28|ENSG00000174473|chr4:172813676-172813676|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22808837890625 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 22.769 1 21.316 20.816 21.816 -1.4535 0 0 0 0.20896 1 3645 3645 18.135 3.5533 1 30900 6350 20604 20617 30506 30506 -0.01778780890560938 NEHAHFQKA 9 Unmodified _NEHAHFQKA_ 0 0 0 nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP nc|ENSG00000142192|P05067-10|APP nc|ENSG00000142192|P05067-10|APP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2625732421875 2 541.262322 1080.51009 0.16888 9.1407E-05 0.039113 2.117E-05 0.20799 0.00011258 541.2622630504314 13.081 0.17047 13.081 12.997 13.167 0 8 4 2 0 0 0 0.034893 1 1869 1869 78.06 48.979 1 766110 30901 4409 20605 20618 30507 30507 -0.02694366644868751 NEHAHFQKA 9 Unmodified _NEHAHFQKA_ 0 0 0 nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP nc|ENSG00000142192|P05067-10|APP nc|ENSG00000142192|P05067-10|APP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.262451171875 2 541.262322 1080.51009 -0.4478 -0.00024238 0.52451 0.0002839 0.076709 4.152E-05 541.2624455755215 13.796 0.14165 12.681 12.592 12.734 -1.1142 6 3 2 0 0 0 0.62314 1 2030 2030 11.495 5.7629 1 697510 30902 4409 20605 20618 30508 30508 -0.02694366644868751 NEHCECHTCE 10 Unmodified _NEHCECHTCE_ 0 0 0 ENSG00000133247|ENST00000255613|KMT5C ENSG00000133247|ENST00000255613|KMT5C ENSG00000133247|ENST00000255613|KMT5C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.29248046875 2 602.69444 1203.37433 NaN NaN NaN NaN NaN NaN NaN 50.444 1 47.563 47.063 48.063 -2.8811 0 0 0 0.22588 1 9570 9570 3.2813 1.2216 1 30903 3793 20606 20619 30509 30509 -0.21922513604499727 NEHECKGY 8 Unmodified _NEHECKGY_ 0 0 0 REV__ENSG00000196172|ENST00000402377|ZNF681 REV__ENSG00000196172|ENST00000402377|ZNF681 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2677307128906 2 490.200541 978.38653 0.13462 6.5991E-05 1.3438 0.00065872 1.4784 0.00072471 490.2010586583116 50.64 0.59204 47.594 47.389 47.981 -3.0453 26 16 2 0 0 0 0.98792 1 9341 9341 9.3474 7.0447 1 585030 + 30904 19224 20607 20620 30510 30510 -0.10352785807504006 NEHEMNAA 8 Unmodified _NEHEMNAA_ 0 0 0 REV__ENSG00000154240|ENST00000535342|CEP112 REV__ENSG00000154240|ENST00000535342|CEP112 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22271728515625 2 458.184891 914.35523 NaN NaN NaN NaN NaN NaN NaN 24.803 1 22.95 22.45 23.45 -1.8534 0 0 0 0.21486 1 4050 4050 10.824 2.2306 1 + 30905 17174 20608 20621 30511 30511 -0.10537358841600053 NEHERVVKA 9 Unmodified _NEHERVVKA_ 0 0 0 ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;CTNND1|p.S895Ifs*8|1|0.33|ENSG00000198561|chr11:57814353-57814354|-/A|frameshift_variant;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;CTNND1|p.Q800Tfs*4|1|0.46|ENSG00000198561|chr11:57809427-57809428|-/A|frameshift_variant;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.E842Kfs*10|1|0.19|ENSG00000198561|chr11:57810192-57810192|A/-|frameshift_variant;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2807006835938 2 541.291079 1080.56761 -0.6113 -0.00033089 0.78014 0.00042228 0.16884 9.1394E-05 541.291370129473 13.908 0.20736 12.735 12.621 12.828 -1.173 12 5 3 0 0 0 0.01743 2 1846 1836;1846 94.909 62.123 1 1377100 30906 747 20609 20622 30512;30513 30513 0.030544755607252227 NEHFGNVL 8 Unmodified _NEHFGNVL_ 0 0 0 ENST00000483571.5_1_14:60582139-60592559:+|nuORF;ENSG00000126773|ENST00000406854|PCNX4 ENST00000483571.5_1_14:60582139-60592559:+|nuORF ENST00000483571.5_1_14:60582139-60592559:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2418212890625 2 465.227417 928.44028 -0.085535 -3.9793E-05 0.56913 0.00026477 0.48359 0.00022498 465.2276610899923 84.073 0.37587 80.465 80.184 80.56 -3.6079 12 10 2 0 0 0 0.53558 2 16439 16439;16446 26.268 9.3258 1 668740 30907 3444 20610 20623 30514;30515 30514 -0.026802453134791904 NEHHRETY 8 Unmodified _NEHHRETY_ 0 0 0 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENSG00000083520|ENST00000377767|DIS3 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78271484375 2 543.241587 1084.46862 0.37694 0.00020477 0.1632 8.8656E-05 0.54014 0.00029343 543.2416656657282 90.311 0.87762 86.266 85.773 86.651 -4.0443 50 24 3 0 0 0 1.0147 1 17239 17239 5.2307 1.9494 1 3255000 30908 838 20611 20624 30516 30516 -0.07023547404173769 NEHPQGKF 8 Unmodified _NEHPQGKF_ 0 0 0 ENST00000552657.1_1_12:49406800-49412523:-|nuORF ENST00000552657.1_1_12:49406800-49412523:-|nuORF ENST00000552657.1_1_12:49406800-49412523:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7326354980469 2 478.732866 955.451179 NaN NaN NaN NaN NaN NaN NaN 95.832 1 91.783 91.283 92.283 -4.0496 0 0 0 0.23487 1 18787 18787 0.12286 0 1 30909 11197 20612 20625 30517 30517 -0.028328429391876853 NEHPQGKF 8 Unmodified _NEHPQGKF_ 0 0 0 ENST00000552657.1_1_12:49406800-49412523:-|nuORF ENST00000552657.1_1_12:49406800-49412523:-|nuORF ENST00000552657.1_1_12:49406800-49412523:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73236083984375 2 478.732866 955.451179 NaN NaN NaN NaN NaN NaN NaN 95.776 1 91.585 91.085 92.085 -4.1911 0 0 0 0.2343 1 18282 18282 0.0082765 0 1 30910 11197 20612 20625 30518 30518 -0.028328429391876853 NEHRWFVGP 9 Unmodified _NEHRWFVGP_ 0 0 0 REV__ENST00000333957.8_1_12:22602475-22602664:-|nuORF REV__ENST00000333957.8_1_12:22602475-22602664:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2106628417969 3 381.189435 1140.54648 NaN NaN NaN NaN NaN NaN NaN 104.87 1 104.87 104.37 105.37 0 0 0 0 0.19651 1 20611 20611 0.029283 0 1 + 30911 20641 20613 20626 30519 30519 -0.018174897481685548 NEHTCHYHT 9 Unmodified _NEHTCHYHT_ 0 0 0 REV__CASZ1|p.R1461H|1|0.32|ENSG00000130940|chr1:10639840-10639840|C/T|missense_variant REV__CASZ1|p.R1461H|1|0.32|ENSG00000130940|chr1:10639840-10639840|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2107238769531 3 381.154173 1140.44069 0.13084 4.9871E-05 1.1391 0.00043418 1.27 0.00048406 381.15472266442686 26.223 0.34595 24.589 24.408 24.754 -1.6347 15 9 2 0 0 0 0.65265 1 4345 4345 0.073264 0.064987 1 456240 + 30912 13272 20614 20627 30520 30520 -0.1239119365593524 NEHYTGVAA 9 Unmodified _NEHYTGVAA_ 0 0 0 ENSG00000171914|ENST00000636159|TLN2 ENSG00000171914|ENST00000636159|TLN2 ENSG00000171914|ENST00000636159|TLN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2331237792969 2 481.222331 960.430109 0.17843 8.5864E-05 0.66092 0.00031805 0.83935 0.00040391 481.2224983385939 27.948 0.5977 25.952 25.467 26.064 -1.9962 20 16 2 0 0 0 0.52027 1 4709 4709 18.373 3.5348 1 1066700 30913 6185 20615 20628 30521 30521 -0.05168853038696852 NEIAAVVF 8 Unmodified _NEIAAVVF_ 0 0 0 nc|ENSG00000154640|Q14201-2|BTG3;ENSG00000154640|ENST00000348354|BTG3;ENST00000464058.1_1_21:18981288-18985128:-|nuORF nc|ENSG00000154640|Q14201-2|BTG3 nc|ENSG00000154640|Q14201-2|BTG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.89068603515625 2 431.737086 861.459619 0.10555 4.5572E-05 -0.14303 -6.175E-05 -0.037473 -1.6179E-05 431.73694104908924 152.01 0.71268 146.77 146.43 147.14 -5.2365 37 19 2 0 0 0 0.49114 1 29420 29420 28.487 0 1 3590000 30914 5019 20616 20629 30522 30522 0.023347109774249475 NEIAAVVF 8 Unmodified _NEIAAVVF_ 0 0 0 nc|ENSG00000154640|Q14201-2|BTG3;ENSG00000154640|ENST00000348354|BTG3;ENST00000464058.1_1_21:18981288-18985128:-|nuORF nc|ENSG00000154640|Q14201-2|BTG3 nc|ENSG00000154640|Q14201-2|BTG3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 431.737086 861.459619 0.13918 6.0087E-05 -0.23995 -0.00010359 -0.10077 -4.3507E-05 431.73691833003534 146.69 0.66006 146.69 146.35 147.01 0 -0.07001 -4.2429E-05 NaN 28.487 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 4061300 30915 5019 20616 20629 0.023347109774249475 NEIAAVVF 8 Unmodified _NEIAAVVF_ 0 0 0 nc|ENSG00000154640|Q14201-2|BTG3;ENSG00000154640|ENST00000348354|BTG3;ENST00000464058.1_1_21:18981288-18985128:-|nuORF nc|ENSG00000154640|Q14201-2|BTG3 nc|ENSG00000154640|Q14201-2|BTG3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 431.737086 861.459619 -0.023689 -1.0228E-05 -0.10612 -4.5814E-05 -0.12981 -5.6042E-05 431.7370229439865 151.55 0.73935 146.79 146.43 147.17 -4.7523 0.036115 7.3131E-05 NaN 28.487 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 4301400 30916 5019 20616 20629 0.023347109774249475 NEIAAVVF 8 Unmodified _NEIAAVVF_ 0 0 0 nc|ENSG00000154640|Q14201-2|BTG3;ENSG00000154640|ENST00000348354|BTG3;ENST00000464058.1_1_21:18981288-18985128:-|nuORF nc|ENSG00000154640|Q14201-2|BTG3 nc|ENSG00000154640|Q14201-2|BTG3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 431.737086 861.459619 0.14842 6.4077E-05 -0.26618 -0.00011492 -0.11777 -5.0844E-05 431.7369336692134 151.95 0.67076 146.78 146.38 147.05 -5.1759 0.019232 -6.5082E-05 NaN 28.487 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3867300 30917 5019 20616 20629 0.023347109774249475 NEIADAIK 8 Unmodified _NEIADAIK_ 0 0 0 REV__ENSG00000130119|ENST00000360845|GNL3L REV__ENSG00000130119|ENST00000360845|GNL3L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23577880859375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 66.53 1 63.203 62.703 63.703 -3.3268 0 0 0 0.21486 1 12526 12526 7.9102 0 1 + 30918 15985 20617 20630 30523 30523 0.019015056264606756 NEIDAEPPA 9 Unmodified _NEIDAEPPA_ 0 0 0 ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF;ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1 ENST00000510834.1_1_5:34915843-34920030:+|nuORF ENST00000510834.1_1_5:34915843-34920030:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7235412597656 2 478.221997 954.429441 0.26185 0.00012522 -0.37342 -0.00017858 -0.11158 -5.3358E-05 478.2217468914779 46.471 1.291 46.471 45.796 47.087 0 112 36 4 0 0 0 0.01249 5 8756 8655;8699;8756;8804;8844 99.799 59.849 1 16004000 30919 2744 20618 20631 30524;30525;30526;30527;30528 30526 -0.04959692478428224 NEIDAEPPA 9 Unmodified _NEIDAEPPA_ 0 0 0 ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF;ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1 ENST00000510834.1_1_5:34915843-34920030:+|nuORF ENST00000510834.1_1_5:34915843-34920030:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7235107421875 2 478.221997 954.429441 -0.017605 -8.4191E-06 0.22283 0.00010656 0.20523 9.8144E-05 478.2221070970427 46.112 0.62324 43.272 42.898 43.521 -2.8409 29 17 2 0 0 0 0.27986 1 8701 8701 32.786 10.049 1 1173700 30920 2744 20618 20631 30529 30529 -0.04959692478428224 NEIDAEPPA 9 Unmodified _NEIDAEPPA_ 0 0 0 ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF;ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1 ENST00000510834.1_1_5:34915843-34920030:+|nuORF ENST00000510834.1_1_5:34915843-34920030:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72344970703125 2 478.221997 954.429441 -0.10679 -5.1071E-05 -0.072825 -3.4826E-05 -0.17962 -8.5897E-05 478.2219024915481 49.468 1.2228 46.586 45.959 47.182 -2.8811 107 34 4 0 0 0 0.006766 7 9365 9265;9311;9316;9365;9408;9414;9462 111.29 59.019 1 18756000 30921 2744 20618 20631 30530;30531;30532;30533;30534;30535;30536 30533 -0.04959692478428224 NEIDAEPPA 9 Unmodified _NEIDAEPPA_ 0 0 0 ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF;ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1 ENST00000510834.1_1_5:34915843-34920030:+|nuORF ENST00000510834.1_1_5:34915843-34920030:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7234802246094 2 478.221997 954.429441 -0.021298 -1.0185E-05 0.44885 0.00021465 0.42756 0.00020447 478.2220334707345 46.101 0.65635 43.236 43.001 43.657 -2.8653 25 18 2 0 0 0 0.33094 1 8395 8395 29.841 10.584 1 939470 30922 2744 20618 20631 30537 30537 -0.04959692478428224 NEIDAEPPA 9 Unmodified _NEIDAEPPA_ 0 0 0 ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF;ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1 ENST00000510834.1_1_5:34915843-34920030:+|nuORF ENST00000510834.1_1_5:34915843-34920030:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7234191894531 2 478.221997 954.429441 0.021166 1.0122E-05 -0.14305 -6.8411E-05 -0.12189 -5.8288E-05 478.22187821818136 49.676 1.2383 46.677 45.999 47.237 -2.999 93 35 3 0 0 0 0.006766 4 9042 8999;9042;9093;9135 111.29 52.608 1 15234000 30923 2744 20618 20631 30538;30539;30540;30541 30539 -0.04959692478428224 NEIDAEPPA 9 Unmodified _NEIDAEPPA_ 0 0 0 ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF;ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1 ENST00000510834.1_1_5:34915843-34920030:+|nuORF ENST00000510834.1_1_5:34915843-34920030:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7235412597656 2 478.221997 954.429441 -0.092656 -4.431E-05 0.011354 5.4296E-06 -0.081302 -3.8881E-05 478.221966016396 46.171 0.65068 43.304 43.031 43.681 -2.8665 27 18 2 0 0 0 0.33094 1 8405 8405 29.841 0.759 1 685700 30924 2744 20618 20631 30542 30542 -0.04959692478428224 NEIDAEPPA 9 Unmodified _NEIDAEPPA_ 0 0 0 ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF;ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENSG00000113460|ENST00000336767|BRIX1 ENST00000510834.1_1_5:34915843-34920030:+|nuORF ENST00000510834.1_1_5:34915843-34920030:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7233581542969 2 478.221997 954.429441 -0.06801 -3.2524E-05 0.060103 2.8743E-05 -0.0079074 -3.7815E-06 478.2219537376429 49.716 1.1391 46.709 46.035 47.174 -3.0068 105 32 4 0 0 0 0.006766 6 9134 8995;9002;9053;9092;9134;9183 111.29 55.941 1 15652000 30925 2744 20618 20631 30543;30544;30545;30546;30547;30548 30547 -0.04959692478428224 NEIEALET 8 Unmodified _NEIEALET_ 0 0 0 FBXO5|p.K207Rfs*9|1|0.14|ENSG00000112029|chr6:152975105-152975105|T/-|frameshift_variant;FBXO5|p.D340Mfs*30|1|0.38|ENSG00000112029|chr6:152972347-152972347|T/-|frameshift_variant;nc|ENSG00000112029|Q9UKT4-2|FBXO5;ENSG00000112029|ENST00000229758|FBXO5 FBXO5|p.K207Rfs*9|1|0.14|ENSG00000112029|chr6:152975105-152975105|T/-|frameshift_variant FBXO5|p.K207Rfs*9|1|0.14|ENSG00000112029|chr6:152975105-152975105|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2264099121094 2 459.724372 917.434192 0.47565 0.00021867 -0.24438 -0.00011235 0.23127 0.00010632 459.72421697088964 76.419 0.63816 76.419 76.201 76.839 0 24 17 2 0 0 0 0.25522 1 14836 14836 39.95 3.8227 1 1435400 30926 2663 20619 20632 30549 30549 -0.027828083356666866 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.88848876953125 3 433.53857 1297.59388 -0.10593 -4.5924E-05 -0.4935 -0.00021395 -0.59943 -0.00025988 433.5384921386562 139.18 0.52252 134.54 134.3 134.82 -4.6439 16 14 2 0 0 0 0.87854 1 27438 27438 3.0723 1.33 1 1019600 30927 3526 20620 20633 30550 30550 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 433.53857 1297.59388 0.039522 1.7134E-05 -0.49463 -0.00021444 -0.45511 -0.00019731 433.53830583954783 139.46 0.35979 134.51 134.35 134.71 -4.952 -0.015882 -5.9095E-07 NaN 3.0723 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1582400 30928 3526 20620 20633 -0.04301300058477864 NEIFHKCA 8 Unmodified _NEIFHKCA_ 0 0 0 REV__nc|ENSG00000203995|Q6WRX3-2|ZYG11A REV__nc|ENSG00000203995|Q6WRX3-2|ZYG11A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.1571044921875 3 321.156855 960.448736 NaN NaN NaN NaN NaN NaN NaN 79.3 1 75.624 75.124 76.124 -3.676 0 0 0 0.21486 1 15108 15108 1.4819 0.28856 1 + 30929 19505 20621 20634 30551 30551 -0.03307014668507691 NEIFQKGGP 9 Unmodified _NEIFQKGGP_ 0 0 0 REV__ENSG00000135413|ENST00000257867|LACRT REV__ENSG00000135413|ENST00000257867|LACRT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 331.0099182128906 3 330.506541 988.497795 -0.78598 -0.00025977 1.0104 0.00033394 0.22441 7.4168E-05 330.5069921904237 46.318 0.97061 43.452 42.783 43.753 -2.8666 32 27 2 0 0 0 0.8799 1 8356 8356 0.96228 0.75542 1 570250 + 30930 16266 20622 20635 30552 30552 0.0030859689211411023 NEIHKLYK 8 Unmodified _NEIHKLYK_ 0 0 0 tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1 tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1 tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6947021484375 2 522.795466 1043.57638 -0.32584 -0.00017035 -0.098422 -5.1455E-05 -0.42426 -0.0002218 522.7953400162398 49.697 0.59252 46.816 46.59 47.182 -2.8811 23 16 2 0 0 0 0.71876 1 9407 9407 11.64 3.7301 1 1368200 30931 26427 20623 20636 30553 30553 0.056334491971938405 NEIHKLYK 8 Unmodified _NEIHKLYK_ 0 0 0 tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1 tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1 tr|U7T461|U7T461_FUSNUHTHrpiR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00267PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2657470703125 2 522.795466 1043.57638 -0.62069 -0.00032449 0.050458 2.6379E-05 -0.57023 -0.00029811 522.7953210347935 49.941 0.47507 46.942 46.727 47.202 -2.999 16 13 2 0 0 0 0.99494 1 9173 9173 8.5933 2.8614 1 1220400 30932 26427 20623 20636 30554 30554 0.056334491971938405 NEIKVAKA 8 Unmodified _NEIKVAKA_ 0 0 0 ENST00000523504.5_1_8:22880186-22926453:-|nuORF;ENST00000523752.5_1_8:22880186-22885396:-|nuORF;nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B ENST00000523504.5_1_8:22880186-22926453:-|nuORF ENST00000523504.5_1_8:22880186-22926453:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2245788574219 2 436.763635 871.512717 0.11392 4.9754E-05 -0.38256 -0.00016709 -0.26865 -0.00011734 436.7634862580102 18.702 0.41459 18.702 18.511 18.926 0 28 11 4 0 0 0 0.49931 1 3006 3006 36.127 10.728 1 6957800 30933 10872 20624 20637 30555 30555 0.071820887600893 NEIKVAKA 8 Unmodified _NEIKVAKA_ 0 0 0 ENST00000523504.5_1_8:22880186-22926453:-|nuORF;ENST00000523752.5_1_8:22880186-22885396:-|nuORF;nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B ENST00000523504.5_1_8:22880186-22926453:-|nuORF ENST00000523504.5_1_8:22880186-22926453:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2248229980469 2 436.763635 871.512717 0.094465 4.1259E-05 -0.24539 -0.00010718 -0.15092 -6.5918E-05 436.7634132142171 20.057 0.41625 18.66 18.379 18.795 -1.3966 17 11 2 0 0 0 0.24385 1 3341 3341 58.679 12.658 1 3053700 30934 10872 20624 20637 30556 30556 0.071820887600893 NEIKVAKA 8 Unmodified _NEIKVAKA_ 0 0 0 ENST00000523504.5_1_8:22880186-22926453:-|nuORF;ENST00000523752.5_1_8:22880186-22885396:-|nuORF;nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B ENST00000523504.5_1_8:22880186-22926453:-|nuORF ENST00000523504.5_1_8:22880186-22926453:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2247314453125 2 436.763635 871.512717 -0.3164 -0.00013819 0.25263 0.00011034 -0.063767 -2.7851E-05 436.76365672158727 19.98 0.27871 18.655 18.487 18.766 -1.3251 17 7 3 0 0 0 0.0034293 1 3075 3075 107.19 29.038 1 2392600 30935 10872 20624 20637 30557 30557 0.071820887600893 NEIKVAKA 8 Unmodified _NEIKVAKA_ 0 0 0 ENST00000523504.5_1_8:22880186-22926453:-|nuORF;ENST00000523752.5_1_8:22880186-22885396:-|nuORF;nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B ENST00000523504.5_1_8:22880186-22926453:-|nuORF ENST00000523504.5_1_8:22880186-22926453:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2242126464844 2 436.763635 871.512717 -1.0714 -0.00046793 0.92835 0.00040547 -0.14301 -6.2463E-05 436.76396726540924 20.245 0.35342 18.61 18.463 18.816 -1.6351 18 9 3 0 0 0 0.0028501 1 3105 3105 110.67 42.594 1 1360900 30936 10872 20624 20637 30558 30558 0.071820887600893 NEILFEEY 8 Unmodified _NEILFEEY_ 0 0 0 nc|ENSG00000075089|Q9GZN1-2|ACTR6;ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant;ENSG00000075089|ENST00000188312|ACTR6 nc|ENSG00000075089|Q9GZN1-2|ACTR6 nc|ENSG00000075089|Q9GZN1-2|ACTR6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 528.2385864257812 2 528.747847 1055.48114 0.129 6.8207E-05 -0.068516 -3.6228E-05 0.060481 3.1979E-05 528.7479780643389 144.37 0.99408 144.37 143.83 144.82 0 75 28 3 0 0 0 0.034494 1 28855 28855 96.24 57.129 1 16803000 30937 45 20625 20638 30559 30559 -0.04437948784516266 NEILFEEY 8 Unmodified _NEILFEEY_ 0 0 0 nc|ENSG00000075089|Q9GZN1-2|ACTR6;ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant;ENSG00000075089|ENST00000188312|ACTR6 nc|ENSG00000075089|Q9GZN1-2|ACTR6 nc|ENSG00000075089|Q9GZN1-2|ACTR6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 528.747847 1055.48114 0.065333 3.4545E-05 -0.18054 -9.5459E-05 -0.1152 -6.0914E-05 528.7478354805131 149.45 0.98083 144.72 144.31 145.29 -4.7323 0.079042 2.3402E-05 NaN 96.24 71 27 3 NaN NaN NaN NaN 0 NaN NaN 0 25050000 30938 45 20625 20638 -0.04437948784516266 NEILFEEY 8 Unmodified _NEILFEEY_ 0 0 0 nc|ENSG00000075089|Q9GZN1-2|ACTR6;ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant;ENSG00000075089|ENST00000188312|ACTR6 nc|ENSG00000075089|Q9GZN1-2|ACTR6 nc|ENSG00000075089|Q9GZN1-2|ACTR6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 528.747847 1055.48114 0.14222 7.5196E-05 -0.22414 -0.00011851 -0.081922 -4.3316E-05 528.7479566126651 149.92 0.97757 144.72 144.22 145.19 -5.1994 0.081212 -2.2705E-05 NaN 96.24 91 27 4 NaN NaN NaN NaN 0 NaN NaN 0 22683000 30939 45 20625 20638 -0.04437948784516266 NEILFEEY 8 Unmodified _NEILFEEY_ 0 0 0 nc|ENSG00000075089|Q9GZN1-2|ACTR6;ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant;ENSG00000075089|ENST00000188312|ACTR6 nc|ENSG00000075089|Q9GZN1-2|ACTR6 nc|ENSG00000075089|Q9GZN1-2|ACTR6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 528.747847 1055.48114 0.40071 0.00021187 -0.35013 -0.00018513 0.050576 2.6742E-05 528.7477356824094 149.87 1.1403 144.75 144.07 145.21 -5.1204 0.10809 -0.00015594 NaN 96.24 92 31 4 NaN NaN NaN NaN 0 NaN NaN 0 19148000 30940 45 20625 20638 -0.04437948784516266 NEILRLAMK 9 Unmodified _NEILRLAMK_ 0 0 0 nc|ENSG00000162367|P17542-3|TAL1;nc|ENSG00000162367|P17542-2|TAL1;ENSG00000162367|ENST00000691006|TAL1 nc|ENSG00000162367|P17542-3|TAL1 nc|ENSG00000162367|P17542-3|TAL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7822875976562 2 544.318251 1086.62195 0.4531 0.00024663 -1.2243 -0.00066641 -0.77119 -0.00041977 544.3194076588971 120.37 0.76527 115.9 115.48 116.24 -4.467 35 21 3 0 0 0 0.71527 1 23136 23136 19.257 9.1831 1 2306500 30941 5324 20626 20639 30560 30560 0.08210351387901937 NEINHISC 8 Unmodified _NEINHISC_ 0 0 0 OR10A6|p.T181I|1|0.29|ENSG00000279000|chr11:7928121-7928121|G/A|missense_variant;ENSG00000279000|ENST00000641238|OR10A6 OR10A6|p.T181I|1|0.29|ENSG00000279000|chr11:7928121-7928121|G/A|missense_variant OR10A6|p.T181I|1|0.29|ENSG00000279000|chr11:7928121-7928121|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2539978027344 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 84.436 1 80.527 80.027 81.027 -3.9093 0 0 0 0.21486 1 16049 16049 10.824 1.4408 1 30942 8047 20627 20640 30561 30561 -0.059801954278327685 NEIQVVGL 8 Unmodified _NEIQVVGL_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21759033203125 2 436.247818 870.481082 -0.070678 -3.0833E-05 0.10174 4.4385E-05 0.031064 1.3551E-05 436.2477802899377 93.243 0.5467 93.243 92.959 93.506 0 32 15 3 0 0 0 0.54916 1 18213 18213 25.399 0 1 9716100 + 30943 23644 20628 20641 30562 30562 0.04066096006158659 NEIQVVGL 8 Unmodified _NEIQVVGL_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 436.247818 870.481082 -0.070678 -3.0833E-05 0.10174 4.4385E-05 0.031064 1.3551E-05 436.2477802899377 93.243 0.5467 93.243 92.959 93.506 0 -0.003615 -3.3315E-05 NaN 25.399 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 9716100 + 30944 23644 20628 20641 0.04066096006158659 NEIQVVGL 8 Unmodified _NEIQVVGL_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.247818 870.481082 -0.094599 -4.1269E-05 0.15267 6.6601E-05 0.058068 2.5332E-05 436.24778288287814 97.223 0.76419 93.125 92.735 93.499 -4.0978 -0.12098 1.1117E-05 NaN 25.399 49 21 4 NaN NaN NaN NaN 0 NaN NaN 0 6517400 + 30945 23644 20628 20641 0.04066096006158659 NEIQVVGL 8 Unmodified _NEIQVVGL_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 436.247818 870.481082 0.11981 5.2265E-05 -0.063102 -2.7528E-05 0.056704 2.4737E-05 436.247701910835 97.571 0.68692 93.336 92.916 93.603 -4.2348 0.08967 -0.00017714 NaN 25.399 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6322600 + 30946 23644 20628 20641 0.04066096006158659 NEIQVVGL 8 Unmodified _NEIQVVGL_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 436.247818 870.481082 -0.19274 -8.4084E-05 0.39066 0.00017042 0.19791 8.6339E-05 436.2478643784605 97.201 0.65422 93.281 92.919 93.574 -3.9194 0.034926 0.00021876 NaN 25.399 45 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6501800 + 30947 23644 20628 20641 0.04066096006158659 NEIRTLIDL 9 Unmodified _NEIRTLIDL_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7872314453125 2 543.811313 1085.60807 0.067757 3.6847E-05 0.089593 4.8722E-05 0.15735 8.5569E-05 543.811333853168 129.93 0.76999 125.09 124.66 125.43 -4.8355 63 21 4 0 0 0 0.12505 1 24997 24997 47.749 5.9091 1 8168200 30948 1453 20629 20642 30563 30563 0.06869397160471635 NEIVAPGS 8 Unmodified _NEIVAPGS_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.2911071777344 2 393.703243 785.391933 -0.29961 -0.00011796 1.7414 0.0006856 1.4418 0.00056765 393.70327493995194 43.198 0.60682 40.479 40.34 40.947 -2.7191 26 16 2 0 0 0 0.81042 1 8183 8183 23.148 0 1 1750000 30949 7485 20630 20643 30564 30564 -0.009347389533672867 NEIVAPGS 8 Unmodified _NEIVAPGS_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 393.29144287109375 2 393.703243 785.391933 -0.62318 -0.00024535 1.152 0.00045355 0.52881 0.0002082 393.70328228214885 43.107 0.69594 40.501 40.315 41.011 -2.606 22 19 2 0 0 0 0.9455 1 7878 7878 16.942 0 1 1615100 30950 7485 20630 20643 30565 30565 -0.009347389533672867 NEIVAPGSV 9 Unmodified _NEIVAPGSV_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 442.7464904785156 2 443.23745 884.460347 -0.21849 -9.6842E-05 0.32102 0.00014229 0.10253 4.5445E-05 443.23752822258837 43.128 1.2675 40.409 40.196 41.463 -2.7191 84 35 3 0 0 0 0.08371 1 8153 8153 11.749 2.2053 1 25070000 30951 7485 20631 20644 30566 30566 0.013495056264900995 NEIVAPGSV 9 Unmodified _NEIVAPGSV_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 443.23745 884.460347 0.3661 0.00016227 -0.34163 -0.00015142 0.024462 1.0843E-05 443.2372330099786 40.554 1.162 40.554 40.316 41.479 0 0.071265 -0.0003569 NaN 11.749 81 32 3 NaN NaN NaN NaN 0 NaN NaN 0 17520000 30952 7485 20631 20644 0.013495056264900995 NEIVAPGSV 9 Unmodified _NEIVAPGSV_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 443.23745 884.460347 -0.089913 -3.9853E-05 0.084798 3.7586E-05 -0.0051151 -2.2672E-06 443.2374164879971 43.165 1.3812 40.432 40.146 41.527 -2.7335 -0.051093 2.1116E-05 NaN 11.749 94 38 4 NaN NaN NaN NaN 0 NaN NaN 0 20653000 30953 7485 20631 20644 0.013495056264900995 NEIVAPGSV 9 Unmodified _NEIVAPGSV_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 443.23745 884.460347 -0.15709 -6.9627E-05 0.21541 9.5477E-05 0.058322 2.585E-05 443.23747514998524 43.142 1.1503 40.536 40.246 41.397 -2.606 0.053434 0.0001369 NaN 11.749 79 32 3 NaN NaN NaN NaN 0 NaN NaN 0 18629000 30954 7485 20631 20644 0.013495056264900995 NEIWLTDVP 9 Unmodified _NEIWLTDVP_ 0 0 0 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7734985351562 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 86.977 1 83.027 82.527 83.527 -3.9503 0 0 0 0.22193 1 16563 16563 17.113 2.5312 1 + 30955 13711 20632 20645 30567 30567 -2.2671392343909247E-05 NEKAEILG 8 Unmodified _NEKAEILG_ 0 0 0 REV__nc|ENSG00000165623|P07492-2|GRP REV__nc|ENSG00000165623|P07492-2|GRP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.228759765625 2 437.23745 872.460347 0.62308 0.00027243 -0.41507 -0.00018149 0.20801 9.0948E-05 437.23702642036676 28.524 0.79011 26.568 26.364 27.154 -1.9561 30 22 2 0 0 0 0.21714 1 5104 5104 43.858 3.901 1 520660 + 30956 16209 20633 20646 30568 30568 0.01901505626483413 NEKDINAVAA 10 Unmodified _NEKDINAVAA_ 0 0 0 BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.282470703125 2 522.769645 1043.52474 0.53875 0.00028164 -0.47488 -0.00024825 0.063868 3.3388E-05 522.7694417986912 46.644 0.34467 46.644 46.384 46.729 0 17 9 2 0 0 0 0.89145 1 8787 8787 4.897 0 1 973090 30957 347 20634 20647 30569 30569 0.004716607126283634 NEKDINAVAA 10 Unmodified _NEKDINAVAA_ 0 0 0 BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.769645 1043.52474 -0.62652 -0.00032752 0.57451 0.00030034 -0.052004 -2.7186E-05 522.7699718777758 49.385 0.3754 46.387 46.207 46.583 -2.999 -0.12875 0.00089369 NaN 4.897 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 621450 30958 347 20634 20647 0.004716607126283634 NEKDSKDSY 9 Unmodified _NEKDSKDSY_ 0 0 0 REV__OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant REV__OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7855834960938 2 543.240918 1084.46728 0.071487 3.8835E-05 3.5301 0.0019177 3.6016 0.0019565 543.7445071506437 57.85 0.77032 57.85 57.475 58.246 0 52 21 4 0 0 0 0.11828 2 11023 11018;11023 49.554 11.379 1 2874700 + 30959 14561 20635 20648 30570;30571 30571 -0.07157226283607088 NEKDSKDSY 9 Unmodified _NEKDSKDSY_ 0 0 0 REV__OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant REV__OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.240918 1084.46728 0.071487 3.8835E-05 3.5301 0.0019177 3.6016 0.0019565 543.7445071506437 57.85 0.77032 57.85 57.475 58.246 0 0.14407 -0.00048005 NaN 49.554 52 21 4 NaN NaN NaN NaN 0 NaN NaN 0 2874700 + 30960 14561 20635 20648 -0.07157226283607088 NEKEEAIVL 9 Unmodified _NEKEEAIVL_ 0 0 0 CFAP69|p.K687Nfs*43|3|0.26|ENSG00000105792|chr7:90303973-90303973|A/-|frameshift_variant;nc|ENSG00000105792|A5D8W1-2|CFAP69;nc|ENSG00000105792|A5D8W1-5|CFAP69;ENSG00000105792|ENST00000389297|CFAP69;ENST00000451029.5_1_7:89905415-89916830:+|nuORF;ENST00000475031.5_1_7:89901258-89916830:+|nuORF CFAP69|p.K687Nfs*43|3|0.26|ENSG00000105792|chr7:90303973-90303973|A/-|frameshift_variant CFAP69|p.K687Nfs*43|3|0.26|ENSG00000105792|chr7:90303973-90303973|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.28173828125 2 522.782222 1043.54989 0.50676 0.00026493 -0.92147 -0.00048173 -0.41471 -0.0002168 522.7817764676732 45.466 0.48929 45.466 45.27 45.759 0 21 13 2 0 0 0 0.7906 1 8534 8534 13.042 0 1 1440800 30961 503 20636 20649 30572 30572 0.02985715515183074 NEKLEFTY 8 Unmodified _NEKLEFTY_ 0 0 0 tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1 tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1 tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2634887695312 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 49.937 1 47.056 46.556 47.556 -2.8811 0 0 0 0.21486 1 9466 9466 12.532 0.89125 1 30962 26033 20637 20650 30573 30573 -0.022422425476179342 NEKLLANN 8 Unmodified _NEKLLANN_ 0 0 0 REV__SCN9A|p.P7Qfs*83|1|0.41|ENSG00000169432|chr2:166311737-166311737|G/-|frameshift_variant REV__SCN9A|p.P7Qfs*83|1|0.41|ENSG00000169432|chr2:166311737-166311737|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2278137207031 2 458.248349 914.482145 -0.2706 -0.000124 0.30859 0.00014141 0.037991 1.741E-05 458.24827475160623 34.613 0.6219 32.296 31.876 32.498 -2.3175 27 17 3 0 0 0 0.96386 1 6309 6309 14.838 0 1 1309000 + 30963 21417 20638 20651 30574 30574 0.021483103750369992 NEKLPREVP 9 Unmodified _NEKLPREVP_ 0 0 0 REV__nc|ENSG00000096063|Q96SB4-3|SRPK1 REV__nc|ENSG00000096063|Q96SB4-3|SRPK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2635498046875 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 86.719 1 82.991 82.491 83.491 -3.7289 0 0 0 0.20628 1 16586 16586 21.747 2.4897 1 + 30964 23966 20639 20652 30575 30575 0.055685303633026706 NEKRRRHRREK 11 Unmodified _NEKRRRHRREK_ 0 0 0 REV__ENSG00000141837|ENST00000360228|CACNA1A REV__ENSG00000141837|ENST00000360228|CACNA1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2769165039062 3 522.304967 1563.89307 NaN NaN NaN NaN NaN NaN NaN 165.23 1 160.28 159.78 160.78 -4.9484 0 0 0 0.22632 1 32272 32272 0.50596 0 1 + 30965 13232 20640 20653 30576 30576 0.13368055137243573 NEKRYRFQNQV 11 Unmodified _NEKRYRFQNQV_ 0 0 0 nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B nc|ENSG00000102230|Q9Y5K3-2|PCYT1B nc|ENSG00000102230|Q9Y5K3-2|PCYT1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3880004882812 2 741.384031 1480.75351 0.45336 0.00033612 -0.64523 -0.00047836 -0.19187 -0.00014225 741.3836882626368 22.023 0.31705 22.023 21.838 22.155 0 21 8 3 0 0 0 0.81736 1 3709 3709 1.3295 0 1 1637100 30966 2118 20641 20654 30577 30577 0.03236253009367829 NEKTEGYYSL 10 Unmodified _NEKTEGYYSL_ 0 0 0 SPAG17|p.D1620Y|1|0.17|ENSG00000155761|chr1:117996662-117996662|C/A|missense_variant SPAG17|p.D1620Y|1|0.17|ENSG00000155761|chr1:117996662-117996662|C/A|missense_variant SPAG17|p.D1620Y|1|0.17|ENSG00000155761|chr1:117996662-117996662|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2789916992188 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 36.087 1 33.834 33.334 34.334 -2.2539 0 0 0 2.8426 1 6379 6379 0.26539 0.20152 1 30967 25773 20642 20655 30578 30578 -0.047637936983846885 NEKVLPLAY 9 Unmodified _NEKVLPLAY_ 0 0 0 nc|ENSG00000107789|Q9UNW1-4|MINPP1;ENSG00000107789|ENST00000371996|MINPP1 nc|ENSG00000107789|Q9UNW1-4|MINPP1 nc|ENSG00000107789|Q9UNW1-4|MINPP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6970825195312 2 523.797675 1045.5808 -0.021803 -1.142E-05 0.22997 0.00012046 0.20816 0.00010903 523.7976625009435 117.25 0.87279 112.76 112.35 113.23 -4.486 52 24 3 0 0 0 1.6479E-07 1 23127 23127 147.06 103.2 1 7107200 30968 2438 20643 20656 30579 30579 0.059829136200733046 NEKVLPLAY 9 Unmodified _NEKVLPLAY_ 0 0 0 nc|ENSG00000107789|Q9UNW1-4|MINPP1;ENSG00000107789|ENST00000371996|MINPP1 nc|ENSG00000107789|Q9UNW1-4|MINPP1 nc|ENSG00000107789|Q9UNW1-4|MINPP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6773681640625 2 523.797675 1045.5808 -0.15321 -8.0252E-05 0.33424 0.00017507 0.18103 9.4822E-05 523.7977830162224 117.25 0.87143 112.67 112.36 113.23 -4.5815 62 24 4 0 0 0 0.028103 1 22557 22557 99.755 74.356 1 6344200 30969 2438 20643 20656 30580 30580 0.059829136200733046 NEKVLPLAY 9 Unmodified _NEKVLPLAY_ 0 0 0 nc|ENSG00000107789|Q9UNW1-4|MINPP1;ENSG00000107789|ENST00000371996|MINPP1 nc|ENSG00000107789|Q9UNW1-4|MINPP1 nc|ENSG00000107789|Q9UNW1-4|MINPP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.797675 1045.5808 0.16745 8.7707E-05 0.014562 7.6274E-06 0.18201 9.5335E-05 523.7976478913605 112.92 0.85163 112.92 112.46 113.31 0 0.15157 -4.6301E-05 NaN 147.06 54 24 3 NaN NaN NaN NaN 0 NaN NaN 0 5920000 30970 2438 20643 20656 0.059829136200733046 NEKVLPLAY 9 Unmodified _NEKVLPLAY_ 0 0 0 nc|ENSG00000107789|Q9UNW1-4|MINPP1;ENSG00000107789|ENST00000371996|MINPP1 nc|ENSG00000107789|Q9UNW1-4|MINPP1 nc|ENSG00000107789|Q9UNW1-4|MINPP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.797675 1045.5808 0.51601 0.00027028 -0.25356 -0.00013282 0.26244 0.00013747 523.797469845586 117.09 0.81851 112.73 112.3 113.12 -4.3585 -0.041341 -0.00032719 NaN 147.06 58 22 3 NaN NaN NaN NaN 0 NaN NaN 0 7847300 30971 2438 20643 20656 0.059829136200733046 NEKYQKGL 8 Unmodified _NEKYQKGL_ 0 0 0 TRAM1|p.F250L|1|0.15|ENSG00000067167|chr8:70583790-70583790|A/C|missense_variant TRAM1|p.F250L|1|0.15|ENSG00000067167|chr8:70583790-70583790|A/C|missense_variant TRAM1|p.F250L|1|0.15|ENSG00000067167|chr8:70583790-70583790|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2655029296875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 108.92 1 104.74 104.24 105.24 -4.1826 0 0 0 0.21486 1 20962 20962 9.3474 0 1 30972 26514 20644 20657 30581 30581 0.023328834091330464 NELAELQRN 9 Unmodified _NELAELQRN_ 0 0 0 REV__ENSG00000106400|ENST00000305105|ZNHIT1 REV__ENSG00000106400|ENST00000305105|ZNHIT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.795166015625 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 44.101 1 41.311 40.811 41.811 -2.79 0 0 0 0.23508 1 8279 8279 12.241 0.60036 1 + 30973 15050 20645 20658 30582 30582 0.0071846546118194965 NELARSPGPQ 10 Unmodified _NELARSPGPQ_ 0 0 0 REV__ENSG00000063587|ENST00000650114|ZNF275 REV__ENSG00000063587|ENST00000650114|ZNF275 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0491943359375 3 356.8526 1067.53597 -0.081092 -2.8938E-05 0.15085 5.3833E-05 0.069763 2.4895E-05 356.852546767297 41.049 0.56182 41.049 40.778 41.34 0 20 15 2 0 0 0 0.84924 1 7593 7593 11.518 0.71837 1 965830 + 30974 14160 20646 20659 30583 30583 0.004904828067765266 NELARSPGPQ 10 Unmodified _NELARSPGPQ_ 0 0 0 REV__ENSG00000063587|ENST00000650114|ZNF275 REV__ENSG00000063587|ENST00000650114|ZNF275 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 356.8526 1067.53597 -0.34258 -0.00012225 0.20686 7.3818E-05 -0.13572 -4.8433E-05 356.85265385265245 43.691 0.51735 40.901 40.703 41.22 -2.79 -0.098014 0.00014085 NaN 11.518 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1618800 + 30975 14160 20646 20659 0.004904828067765266 NELARSPGPQ 10 Unmodified _NELARSPGPQ_ 0 0 0 REV__ENSG00000063587|ENST00000650114|ZNF275 REV__ENSG00000063587|ENST00000650114|ZNF275 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 356.8526 1067.53597 -0.037642 -1.3433E-05 -0.093444 -3.3346E-05 -0.13109 -4.6778E-05 356.8525911264874 43.812 0.52772 41.046 40.758 41.286 -2.7661 0.047512 -0.00018064 NaN 11.518 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1559000 + 30976 14160 20646 20659 0.004904828067765266 NELEDSRKTTA 11 Unmodified _NELEDSRKTTA_ 0 0 0 ENSG00000156802|ENST00000287394|ATAD2 ENSG00000156802|ENST00000287394|ATAD2 ENSG00000156802|ENST00000287394|ATAD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.3221740722656 3 421.877363 1262.61026 -0.29559 -0.0001247 0.41409 0.0001747 0.1185 4.9992E-05 421.8774571626296 17.944 0.21303 16.633 16.511 16.725 -1.3109 10 5 3 0 0 0 0.96192 1 2903 2903 1.3296 0.11481 1 370810 30977 5104 20647 20660 30584 30584 -0.01054218892386416 NELEHLQY 8 Unmodified _NELEHLQY_ 0 0 0 nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;BBS7|p.K355Q|1|0.4|ENSG00000138686|chr4:121845671-121845671|T/G|missense_variant nc|ENSG00000138686|Q8IWZ6-2|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6783447265625 2 523.251089 1044.48762 0.57203 0.00029932 -0.6817 -0.0003567 -0.10966 -5.7381E-05 523.2507995423202 80.517 0.62258 80.517 80.11 80.733 0 42 17 3 0 0 0 0.012652 1 15693 15693 137.42 85.155 1 7788500 30978 4200 20648 20661 30585 30585 -0.03284010833135653 NELEHLQY 8 Unmodified _NELEHLQY_ 0 0 0 nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;BBS7|p.K355Q|1|0.4|ENSG00000138686|chr4:121845671-121845671|T/G|missense_variant nc|ENSG00000138686|Q8IWZ6-2|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6929321289062 2 523.251089 1044.48762 -0.21398 -0.00011196 0.24654 0.000129 0.03256 1.7037E-05 523.2512338392139 84.129 0.65101 80.465 80.128 80.779 -3.6641 53 18 4 0 0 0 1.5709E-07 1 16441 16441 142.08 74.736 1 12282000 30979 4200 20648 20661 30586 30586 -0.03284010833135653 NELEHLQY 8 Unmodified _NELEHLQY_ 0 0 0 nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;BBS7|p.K355Q|1|0.4|ENSG00000138686|chr4:121845671-121845671|T/G|missense_variant nc|ENSG00000138686|Q8IWZ6-2|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.67724609375 2 523.251089 1044.48762 -0.43151 -0.00022579 0.6175 0.00032311 0.18599 9.7319E-05 523.251407308828 84.359 0.65932 80.45 80.074 80.734 -3.9093 45 18 3 0 0 0 0.00022574 2 16017 16017;16086 149.91 81.833 1 10511000 30980 4200 20648 20661 30587;30588 30587 -0.03284010833135653 NELEHLQY 8 Unmodified _NELEHLQY_ 0 0 0 nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;BBS7|p.K355Q|1|0.4|ENSG00000138686|chr4:121845671-121845671|T/G|missense_variant nc|ENSG00000138686|Q8IWZ6-2|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6788330078125 2 523.251089 1044.48762 0.016394 8.5782E-06 -0.0096256 -5.0366E-06 0.0067685 3.5416E-06 523.2511181857176 84.185 0.672 80.473 80.026 80.698 -3.7117 52 18 4 0 0 0 4.7765E-05 1 16096 16096 122.18 78.321 1 13310000 30981 4200 20648 20661 30589 30589 -0.03284010833135653 NELEKLPSL 9 Unmodified _NELEKLPSL_ 0 0 0 ENST00000472011.5_1_1:235582749-235612074:+|nuORF;nc|ENSG00000285053|Q15813|TBCE;nc|ENSG00000285053|Q15813-2|TBCE ENST00000472011.5_1_1:235582749-235612074:+|nuORF ENST00000472011.5_1_1:235582749-235612074:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2669067382812 2 521.792589 1041.57063 -0.077716 -4.0552E-05 -0.093391 -4.8731E-05 -0.17111 -8.9282E-05 521.7926442757627 124.65 0.48768 120.05 119.77 120.26 -4.5984 16 13 2 0 0 0 0.29034 1 24544 24544 39.213 15.423 1 1401600 30982 10217 20649 20662 30590 30590 0.0515030589485832 NELELTKM 8 Unmodified _NELELTKM_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.D2603N|1|0.25|ENSG00000117724|chr1:214647377-214647377|G/A|missense_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2554931640625 2 489.252243 976.489932 0.086435 4.2288E-05 0.042042 2.0569E-05 0.12848 6.2858E-05 489.2521068425619 88.239 0.58965 88.239 87.952 88.542 0 37 16 3 0 0 0 0.23568 1 17205 17205 41.956 7.5538 1 3276500 30983 3001 20650 20663 30591 30591 0.00074701580308556 NELELTKM 8 Unmodified _NELELTKM_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.D2603N|1|0.25|ENSG00000117724|chr1:214647377-214647377|G/A|missense_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26513671875 2 489.252243 976.489932 0.089987 4.4026E-05 -0.406 -0.00019864 -0.31601 -0.00015461 489.251927985345 91.86 0.68671 87.935 87.581 88.267 -3.9251 41 19 3 0 0 0 0.42637 2 17992 17989;17992 36.506 6.6656 1 3829300 30984 3001 20650 20663 30592;30593 30593 0.00074701580308556 NELELTKM 8 Unmodified _NELELTKM_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.D2603N|1|0.25|ENSG00000117724|chr1:214647377-214647377|G/A|missense_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2568054199219 2 489.252243 976.489932 0.40214 0.00019675 -0.35222 -0.00017232 0.049925 2.4426E-05 489.251922241213 92.097 0.66246 88.002 87.633 88.295 -4.0946 34 18 3 0 0 0 0.27251 2 17544 17526;17544 38.176 13.649 1 4260200 30985 3001 20650 20663 30594;30595 30595 0.00074701580308556 NELENERY 8 Unmodified _NELENERY_ 0 0 0 ENST00000502495.1_1_4:129873642-129918394:-|nuORF;SCLT1|p.S348Vfs*14|1|0.07|ENSG00000151466|chr4:128959605-128959605|T/-|frameshift_variant;SCLT1|p.A424Qfs*6|1|0.13|ENSG00000151466|chr4:128948520-128948520|T/-|frameshift_variant;ENSG00000151466|ENST00000281142|SCLT1 ENST00000502495.1_1_4:129873642-129918394:-|nuORF ENST00000502495.1_1_4:129873642-129918394:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2703247070312 2 533.743628 1065.4727 -0.18843 -0.00010057 0.48222 0.00025738 0.29379 0.00015681 533.7438586549866 39.688 0.2767 37.139 36.999 37.276 -2.5491 10 7 2 0 0 0 0.93121 1 7389 7389 27.629 7.1752 1 707510 30986 4869 20651 20664 30596 30596 -0.0574150270113023 NELENERY 8 Unmodified _NELENERY_ 0 0 0 ENST00000502495.1_1_4:129873642-129918394:-|nuORF;SCLT1|p.S348Vfs*14|1|0.07|ENSG00000151466|chr4:128959605-128959605|T/-|frameshift_variant;SCLT1|p.A424Qfs*6|1|0.13|ENSG00000151466|chr4:128948520-128948520|T/-|frameshift_variant;ENSG00000151466|ENST00000281142|SCLT1 ENST00000502495.1_1_4:129873642-129918394:-|nuORF ENST00000502495.1_1_4:129873642-129918394:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2611694335938 2 533.743628 1065.4727 0.19056 0.00010171 -0.43548 -0.00023243 -0.24492 -0.00013072 533.7434657493894 39.545 0.25134 37.14 36.996 37.247 -2.4049 9 6 2 0 0 0 0.80998 1 7052 7052 26.268 9.1552 1 333020 30987 4869 20651 20664 30597 30597 -0.0574150270113023 NELFEVREKP 10 Unmodified _NELFEVREKP_ 0 0 0 ENSG00000136935|ENST00000373555|GOLGA1;ENST00000475407.5_2_9:127642811-127683993:-|nuORF ENSG00000136935|ENST00000373555|GOLGA1 ENSG00000136935|ENST00000373555|GOLGA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7654418945312 2 630.832777 1259.651 NaN NaN NaN NaN NaN NaN NaN 42.905 1 40.254 39.754 40.754 -2.651 0 0 0 0.22588 1 7734 7734 2.4985 0.21571 1 30988 4054 20652 20665 30598 30598 0.031561672178895606 NELGFRYTS 9 Unmodified _NELGFRYTS_ 0 0 0 REV__SCYL3|p.N511Ifs*68|1|0.35|ENSG00000000457|chr1:169854907-169854907|T/-|frameshift_variant REV__SCYL3|p.N511Ifs*68|1|0.35|ENSG00000000457|chr1:169854907-169854907|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7794799804688 2 543.764363 1085.51417 NaN NaN NaN NaN NaN NaN NaN 129.76 1 129.76 129.26 130.26 0 0 0 0 0.19646 1 25639 25639 0.073264 0.041854 1 + 30989 24598 20653 20666 30599 30599 -0.025163219418118388 NELGLKEITY 10 Unmodified _NELGLKEITY_ 0 0 0 ENST00000574450.1_1_16:25186216-25189341:+|nuORF;nc|ENSG00000205629|Q9UIC8-3|LCMT1;ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1 ENST00000574450.1_1_16:25186216-25189341:+|nuORF ENST00000574450.1_1_16:25186216-25189341:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2769165039062 2 590.316428 1178.6183 NaN NaN NaN NaN NaN NaN NaN 114.63 1 114.63 114.13 115.13 0 0 0 0 0.10412 1 22550 22550 46.475 10.863 1 30990 7652 20654 20667 30600 30600 0.03613960095049151 NELGLKEITY 10 Unmodified _NELGLKEITY_ 0 0 0 ENST00000574450.1_1_16:25186216-25189341:+|nuORF;nc|ENSG00000205629|Q9UIC8-3|LCMT1;ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1 ENST00000574450.1_1_16:25186216-25189341:+|nuORF ENST00000574450.1_1_16:25186216-25189341:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2708740234375 2 590.316428 1178.6183 0.75535 0.0004459 0.47746 0.00028185 1.2328 0.00072775 590.3164141107428 119.2 0.28276 114.69 114.47 114.75 -4.502 9 7 2 0 0 0 0.2423 1 23476 23476 61.09 3.8408 1 929570 30991 7652 20654 20667 30601 30601 0.03613960095049151 NELGMRGP 8 Unmodified _NELGMRGP_ 0 0 0 REV__ENSG00000163576|ENST00000295824|EFHB REV__ENSG00000163576|ENST00000295824|EFHB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2284851074219 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 108.05 1 103.73 103.23 104.23 -4.32 0 0 0 0.22934 1 21285 21285 0.62683 0 1 + 30992 17586 20655 20668 30602 30602 -0.023875877025943737 NELIFIEIW 9 Unmodified _NELIFIEIW_ 0 0 0 REV__tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1 REV__tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.2911071777344 3 392.881497 1175.62266 -0.29118 -0.0001144 0.34446 0.00013533 0.053282 2.0934E-05 392.88146921696074 43.455 0.28098 40.736 40.666 40.947 -2.7191 11 7 2 0 0 0 0.8606 1 8183 8183 7.1017 1.699 1 1071900 + 30993 25372 20656 20669 30603 30603 0.041874693085901527 NELIGQTV 8 Unmodified _NELIGQTV_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant;SUPT5H|p.R711H|1|0.23|ENSG00000196235|chr19:39472906-39472906|G/A|missense_variant nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2286682128906 2 437.23745 872.460347 0.21359 9.3391E-05 -0.42673 -0.00018658 -0.21314 -9.3192E-05 437.2371535869417 86.126 1.1554 82.176 81.771 82.926 -3.9503 44 32 2 0 0 0 0.23681 1 16421 16421 41.84 3.8656 1 1968500 30994 7250 20657 20670 30604 30604 0.01901505626483413 NELIKQLLLP 10 Unmodified _NELIKQLLLP_ 0 0 0 REV__ENSG00000183111|ENST00000333677|ARHGEF37 REV__ENSG00000183111|ENST00000333677|ARHGEF37 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2675170898438 2 590.868631 1179.72271 0.53271 0.00031476 -2.7907 -0.001649 -2.258 -0.0013342 590.8671988297295 169.56 0.3378 164.69 164.48 164.82 -4.873 10 9 2 0 0 0 1.1276 1 33456 33456 6.6304 1.7334 1 10970000 + 30995 18820 20658 20671 30605 30605 0.14003706642415636 NELIKQLLLP 10 Unmodified _NELIKQLLLP_ 0 0 0 REV__ENSG00000183111|ENST00000333677|ARHGEF37 REV__ENSG00000183111|ENST00000333677|ARHGEF37 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 590.868631 1179.72271 0.72381 0.00042768 -3.1327 -0.001851 -2.4089 -0.0014234 590.8665404384817 169.45 0.13261 164.66 164.59 164.72 -4.7898 -0.037782 -0.00029574 NaN 6.6304 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 10637000 + 30996 18820 20658 20671 0.14003706642415636 NELIKQLLLP 10 Unmodified _NELIKQLLLP_ 0 0 0 REV__ENSG00000183111|ENST00000333677|ARHGEF37 REV__ENSG00000183111|ENST00000333677|ARHGEF37 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 590.868631 1179.72271 0.60408 0.00035693 0.71242 0.00042095 1.3165 0.00077788 591.3725014307622 169.68 0.17233 164.75 164.6 164.77 -4.9295 0.051004 0.0042482 NaN 6.6304 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 6782100 + 30997 18820 20658 20671 0.14003706642415636 NELISNAL 8 Unmodified _NELISNAL_ 0 0 0 REV__ENSG00000264717|ENST00000576178|NPY4R2 REV__ENSG00000264717|ENST00000576178|NPY4R2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2157897949219 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 113.51 1 109.06 108.56 109.56 -4.4539 0 0 0 0.19753 1 22363 22363 25.399 0 1 + 30998 19517 20659 20672 30606 30606 0.019015056264720442 NELKVGEP 8 Unmodified _NELKVGEP_ 0 0 0 REV__ENST00000450269.5_1_1:45279549-45279714:+|nuORF REV__ENST00000450269.5_1_1:45279549-45279714:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 885.39453125 1 885.467623 884.460347 0.12308 0.00010898 -0.16573 -0.00014675 -0.042654 -3.7768E-05 885.4676151445744 43.158 0.80306 40.552 40.315 41.118 -2.606 28 22 2 0 0 0 0.03601 1 7841 7841 126.57 41.294 1 2993400 + 30999 21795 20660 20673 30607 30607 0.013495056264900995 NELKVGEP 8 Unmodified _NELKVGEP_ 0 0 0 REV__ENST00000450269.5_1_1:45279549-45279714:+|nuORF REV__ENST00000450269.5_1_1:45279549-45279714:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 885.467623 884.460347 0.68136 0.00060332 -0.72506 -0.00064202 -0.043703 -3.8697E-05 885.4670544865528 40.585 0.63663 40.585 40.387 41.023 0 0.06592 -0.00049228 NaN 126.57 21 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2679900 + 31000 21795 20660 20673 0.013495056264900995 NELKVGEP 8 Unmodified _NELKVGEP_ 0 0 0 REV__ENST00000450269.5_1_1:45279549-45279714:+|nuORF REV__ENST00000450269.5_1_1:45279549-45279714:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 885.467623 884.460347 0.169 0.00014964 -0.069301 -6.1364E-05 0.099698 8.8279E-05 885.4675453701929 43.17 0.68063 40.451 40.266 40.947 -2.7191 -0.068288 8.837E-05 NaN 126.57 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2563000 + 31001 21795 20660 20673 0.013495056264900995 NELKVGEP 8 Unmodified _NELKVGEP_ 0 0 0 REV__ENST00000450269.5_1_1:45279549-45279714:+|nuORF REV__ENST00000450269.5_1_1:45279549-45279714:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 885.467623 884.460347 0.18694 0.00016553 0.11078 9.8089E-05 0.29772 0.00026362 885.4677143843376 43.142 0.72464 40.488 40.293 41.018 -2.6533 -0.030654 0.00024782 NaN 126.57 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3730500 + 31002 21795 20660 20673 0.013495056264900995 NELKVGEP 8 Unmodified _NELKVGEP_ 0 0 0 REV__ENST00000450269.5_1_1:45279549-45279714:+|nuORF REV__ENST00000450269.5_1_1:45279549-45279714:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 885.467623 884.460347 0.12308 0.00010898 -0.16573 -0.00014675 -0.042654 -3.7768E-05 885.4676151445744 43.158 0.80306 40.552 40.315 41.118 -2.606 0.033022 2.985E-06 NaN 126.57 28 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2993400 + 31003 21795 20660 20673 0.013495056264900995 NELLGHVF 8 Unmodified _NELLGHVF_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.250732421875 2 464.747985 927.481417 -0.09948 -4.6233E-05 -2.1425 -0.00099573 -2.242 -0.001042 464.745858840736 42.293 1.0201 39.642 38.9 39.92 -2.651 60 28 3 0 0 0 0.68128 1 7555 7555 16.942 2.3606 1 3630700 + 31004 19081 20661 20674 30608 30608 0.014775157260032756 NELLIWAC 8 Unmodified _NELLIWAC_ 0 0 0 ENSG00000092439|ENST00000646667|TRPM7 ENSG00000092439|ENST00000646667|TRPM7 ENSG00000092439|ENST00000646667|TRPM7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 321.1534729003906 3 321.165239 960.473888 NaN NaN NaN NaN NaN NaN NaN 5.4466 1 4.4066 3.9066 4.9066 -1.04 0 0 0 0.21486 1 271 271 0.45834 0 1 31005 1835 20662 20675 30609 30609 -0.007929598659416115 NELLLLLLQ 9 Unmodified _NELLLLLLQ_ 0 0 0 REV__ENSG00000168754|ENST00000490605|FAM178B REV__ENSG00000168754|ENST00000490605|FAM178B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5624694824219 3 356.893625 1067.65905 -0.19067 -6.8048E-05 -0.25075 -8.949E-05 -0.44142 -0.00015754 356.89354872324566 127.42 0.62788 122.81 122.4 123.03 -4.6172 26 17 2 0 0 0 0.56084 1 25142 25142 0.029283 0 1 1407300 + 31006 18049 20663 20676 30610 30610 0.1279234620533316 NELLLLLLQ 9 Unmodified _NELLLLLLQ_ 0 0 0 REV__ENSG00000168754|ENST00000490605|FAM178B REV__ENSG00000168754|ENST00000490605|FAM178B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 356.893625 1067.65905 0.19292 6.8852E-05 -0.46452 -0.00016578 -0.2716 -9.6933E-05 356.8934849394018 127.67 0.5299 122.87 122.59 123.12 -4.7958 -0.021287 -0.00022894 NaN 0.029283 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1320800 + 31007 18049 20663 20676 0.1279234620533316 NELLLLLLQ 9 Unmodified _NELLLLLLQ_ 0 0 0 REV__ENSG00000168754|ENST00000490605|FAM178B REV__ENSG00000168754|ENST00000490605|FAM178B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 356.893625 1067.65905 -0.53367 -0.00019046 0.13704 4.891E-05 -0.39662 -0.00014155 357.2279198122205 127.7 0.564 123 122.64 123.21 -4.6998 0.10766 0.00041514 NaN 0.029283 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1255000 + 31008 18049 20663 20676 0.1279234620533316 NELMEGKV 8 Unmodified _NELMEGKV_ 0 0 0 PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant;PRPF4B|p.K780Nfs*13|4|0.31|ENSG00000112739|chr6:4052741-4052741|A/-|frameshift_variant;ENSG00000112739|ENST00000337659|PRPF4B PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2313537597656 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 22.997 1 21.544 21.044 22.044 -1.4535 0 0 0 0.2074 1 3690 3690 19.439 1.304 1 31009 2708 20664 20677 30611 30611 -0.014418541082022784 NELNLPNL 8 Unmodified _NELNLPNL_ 0 0 0 nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1;ENSG00000131979|ENST00000491895|GCH1 nc|ENSG00000131979|P30793-3|GCH1 nc|ENSG00000131979|P30793-3|GCH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 464.1709289550781 2 463.750724 925.486896 0.053481 2.4802E-05 -0.19943 -9.2488E-05 -0.14595 -6.7686E-05 463.75052540648363 152.23 0.74876 147.48 147.1 147.84 -4.7523 36 20 3 0 0 0 0.47546 1 30276 30276 44.407 10.305 1 3029500 31010 3701 20665 20678 30612 30612 0.021171945178025453 NELNLPNL 8 Unmodified _NELNLPNL_ 0 0 0 nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1;ENSG00000131979|ENST00000491895|GCH1 nc|ENSG00000131979|P30793-3|GCH1 nc|ENSG00000131979|P30793-3|GCH1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 463.750724 925.486896 0.10302 4.7778E-05 -0.30371 -0.00014085 -0.20068 -9.3067E-05 463.75052793800324 152.81 0.62547 147.54 147.29 147.92 -5.2669 0.044655 -1.0531E-05 NaN 67.344 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1572300 31011 3701 20665 20678 0.021171945178025453 NELNLPNL 8 Unmodified _NELNLPNL_ 0 0 0 nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1;ENSG00000131979|ENST00000491895|GCH1 nc|ENSG00000131979|P30793-3|GCH1 nc|ENSG00000131979|P30793-3|GCH1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 463.750724 925.486896 0.37556 0.00017416 -0.3723 -0.00017266 0.0032529 1.5085E-06 463.7505118417211 152.69 0.7061 147.46 147.15 147.86 -5.2209 -0.029238 -7.4152E-05 NaN 67.344 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1942100 31012 3701 20665 20678 0.021171945178025453 NELPAHLL 8 Unmodified _NELPAHLL_ 0 0 0 ENSG00000013016|ENST00000322054|EHD3 ENSG00000013016|ENST00000322054|EHD3 ENSG00000013016|ENST00000322054|EHD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7564392089844 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 95.672 1 91.622 91.122 92.122 -4.0496 0 0 0 0.19954 1 18756 18756 24.674 0 1 31013 1090 20666 20679 30613 30613 0.04053802243049631 NELQPLHVTYY 11 Unmodified _NELQPLHVTYY_ 0 0 0 REV__ENST00000423212.1_1_1:178716132-178716684:-|nuORF REV__ENST00000423212.1_1_1:178716132-178716684:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2356872558594 3 459.566348 1375.67722 0.58698 0.00026976 -0.53527 -0.00024599 0.051704 2.3761E-05 459.56604147980136 112.21 1.0157 107.94 107.48 108.5 -4.2725 116 28 6 0 0 0 0.79196 1 21525 21525 4.7159 0.30977 1 34226000 + 31014 21531 20667 20680 30614 30614 0.004404363894082053 NELQTIGF 8 Unmodified _NELQTIGF_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;nc|ENSG00000109814|O60701-2|UGDH;ENSG00000109814|ENST00000316423|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5228576660156 2 461.23745 920.460347 -0.032187 -1.4846E-05 0.33029 0.00015234 0.29811 0.0001375 461.2374994054827 141.63 0.73358 136.98 136.58 137.31 -4.6493 34 20 2 0 0 0 0.15482 1 27949 27949 52.268 10.174 1 2359000 31015 2544 20668 20681 30615 30615 -0.0030649437350120934 NELQTIGF 8 Unmodified _NELQTIGF_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;nc|ENSG00000109814|O60701-2|UGDH;ENSG00000109814|ENST00000316423|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.23745 920.460347 0.041764 1.9263E-05 -0.11353 -5.2366E-05 -0.071771 -3.3103E-05 461.2374157736348 141.87 0.68806 136.88 136.56 137.25 -4.9877 -0.027006 -0.00016161 NaN 52.268 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2508300 31016 2544 20668 20681 -0.0030649437350120934 NELQTIGF 8 Unmodified _NELQTIGF_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;nc|ENSG00000109814|O60701-2|UGDH;ENSG00000109814|ENST00000316423|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.23745 920.460347 0.27451 0.00012661 -0.10651 -4.9129E-05 0.16799 7.7484E-05 461.23732788422444 141.72 0.56096 136.85 136.61 137.17 -4.8678 -0.051583 -0.00015513 NaN 52.268 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1856200 31017 2544 20668 20681 -0.0030649437350120934 NELQTVYEA 9 Unmodified _NELQTVYEA_ 0 0 0 ENST00000517413.5_1_8:17512046-17533895:-|nuORF;nc|ENSG00000129422|Q9ULD2-4|MTUS1;nc|ENSG00000129422|Q9ULD2-7|MTUS1;nc|ENSG00000129422|Q9ULD2-3|MTUS1;nc|ENSG00000129422|Q9ULD2-6|MTUS1;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1 ENST00000517413.5_1_8:17512046-17533895:-|nuORF ENST00000517413.5_1_8:17512046-17533895:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2770385742188 2 533.756204 1065.49785 0.32107 0.00017137 -0.90118 -0.00048101 -0.5801 -0.00030963 533.7557730174356 82.833 0.61633 82.833 82.568 83.185 0 29 17 2 0 0 0 0.60663 1 16125 16125 32.786 7.3864 1 5421300 31018 3564 20669 20682 30616 30616 -0.03227447898552782 NELRLQGKL 9 Unmodified _NELRLQGKL_ 0 0 0 ZBTB34|p.S187Afs*29|1|0.2|ENSG00000177125|chr9:126879965-126879965|C/-|frameshift_variant;nc|ENSG00000177125|Q8NCN2|ZBTB34;ENSG00000177125|ENST00000319119|ZBTB34 ZBTB34|p.S187Afs*29|1|0.2|ENSG00000177125|chr9:126879965-126879965|C/-|frameshift_variant ZBTB34|p.S187Afs*29|1|0.2|ENSG00000177125|chr9:126879965-126879965|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5569152832031 3 357.548741 1069.62439 -0.78098 -0.00027924 1.094 0.00039115 0.31299 0.00011191 357.5491161959764 108.27 0.58769 103.95 103.69 104.28 -4.32 27 16 2 0 0 0 0.63065 1 21393 21393 0.029283 0 1 1475500 31019 6498 20670 20683 30617 30617 0.09236523117260731 NELRNQQFM 9 Unmodified _NELRNQQFM_ 0 0 0 sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1 sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1 sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.2911071777344 3 393.857357 1178.55024 -0.28084 -0.00011061 -0.021874 -8.6154E-06 -0.30271 -0.00011923 393.8575283740978 43.664 0.28049 40.874 40.736 41.017 -2.79 10 7 2 0 0 0 0.80521 1 8183 8183 7.1017 1.699 1 738730 31020 25765 20671 20684 30618 30618 -0.031891880365947145 NELRQFLRDHR 11 Unmodified _NELRQFLRDHR_ 0 0 0 REV__ALPK1|p.W991R|1|0.28|ENSG00000073331|chr4:112432518-112432518|T/C|missense_variant REV__ALPK1|p.W991R|1|0.28|ENSG00000073331|chr4:112432518-112432518|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3948364257812 2 742.397473 1482.78039 NaN NaN NaN NaN NaN NaN NaN 128.8 1 128.8 128.3 129.3 0 0 0 0 0.22632 1 25439 25439 0.00056442 0 1 + 31021 13015 20672 20685 30619 30619 0.0583136162053961 NELSELRGE 9 Unmodified _NELSELRGE_ 0 0 0 ANK3|p.D2451N|1|0.12|ENSG00000151150|chr10:60073530-60073530|C/T|missense_variant ANK3|p.D2451N|1|0.12|ENSG00000151150|chr10:60073530-60073530|C/T|missense_variant ANK3|p.D2451N|1|0.12|ENSG00000151150|chr10:60073530-60073530|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6946411132812 2 523.759278 1045.504 0.50488 0.00026443 -1.3229 -0.00069289 -0.81804 -0.00042846 523.7585524501858 45.832 0.5553 45.832 45.518 46.073 0 22 15 2 0 0 0 0.36034 1 8636 8636 22.736 3.4793 1 1107700 31022 155 20673 20686 30620 30620 -0.01692929667046883 NELSQVPPP 9 Unmodified _NELSQVPPP_ 0 0 0 nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENSG00000166908|ENST00000354947|PIP4K2C nc|ENSG00000166908|Q8TBX8-2|PIP4K2C nc|ENSG00000166908|Q8TBX8-2|PIP4K2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2763366699219 2 490.756007 979.497461 -0.037176 -1.8244E-05 0.15357 7.5366E-05 0.1164 5.7122E-05 490.7560706735964 69.971 0.9938 69.971 69.455 70.449 0 73 27 3 0 0 0 0.045272 1 13502 13502 85.272 26.593 1 5217400 31023 5763 20674 20687 30621 30621 0.006891771722393969 NELSQVPPP 9 Unmodified _NELSQVPPP_ 0 0 0 nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENSG00000166908|ENST00000354947|PIP4K2C nc|ENSG00000166908|Q8TBX8-2|PIP4K2C nc|ENSG00000166908|Q8TBX8-2|PIP4K2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2553405761719 2 490.756007 979.497461 0.9612 0.00047172 -0.80784 -0.00039645 0.15337 7.5265E-05 490.75566793338277 23.696 0.34351 22.143 21.976 22.319 -1.5532 15 9 2 0 0 0 0.71527 1 4122 4122 9.3831 3.1773 1 1284100 31024 5763 20674 20687 30622 30622 0.006891771722393969 NELSQVPPP 9 Unmodified _NELSQVPPP_ 0 0 0 nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENSG00000166908|ENST00000354947|PIP4K2C nc|ENSG00000166908|Q8TBX8-2|PIP4K2C nc|ENSG00000166908|Q8TBX8-2|PIP4K2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26324462890625 2 490.756007 979.497461 0.29134 0.00014297 -0.089098 -4.3725E-05 0.20224 9.9249E-05 490.7559494794558 73.721 0.76405 70.044 69.686 70.45 -3.6764 54 21 3 0 0 0 0.45788 1 13892 13892 39.95 13.066 1 2956600 31025 5763 20674 20687 30623 30623 0.006891771722393969 NELSQVPPP 9 Unmodified _NELSQVPPP_ 0 0 0 nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENSG00000166908|ENST00000354947|PIP4K2C nc|ENSG00000166908|Q8TBX8-2|PIP4K2C nc|ENSG00000166908|Q8TBX8-2|PIP4K2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2763366699219 2 490.756007 979.497461 0.13848 6.796E-05 -0.048214 -2.3661E-05 0.090267 4.4299E-05 490.75596219463773 73.797 0.77339 70.203 69.657 70.43 -3.594 47 21 3 0 0 0 0.31673 1 13991 13991 26.268 0 1 3103400 31026 5763 20674 20687 30624 30624 0.006891771722393969 NELVPRFVP 9 Unmodified _NELVPRFVP_ 0 0 0 REV__ENSG00000132357|ENST00000254691|CARD6 REV__ENSG00000132357|ENST00000254691|CARD6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0727233886719 3 357.537953 1069.59203 -0.20973 -7.4986E-05 0.039937 1.4279E-05 -0.16979 -6.0707E-05 357.53794352970107 63.383 0.60953 60.385 60.051 60.661 -2.9975 37 17 3 0 0 0 0.82357 1 12183 12183 10.8 3.6978 1 2536600 + 31027 16110 20675 20688 30625 30625 0.06001735714244205 NELVPRFVP 9 Unmodified _NELVPRFVP_ 0 0 0 REV__ENSG00000132357|ENST00000254691|CARD6 REV__ENSG00000132357|ENST00000254691|CARD6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.0612487792969 3 357.537953 1069.59203 0.18262 6.5294E-05 -0.32006 -0.00011444 -0.13744 -4.9141E-05 357.5377606288567 63.766 0.52012 60.35 60.149 60.669 -3.4158 36 14 3 0 0 0 0.82357 1 11886 11886 7.1017 0 1 2192400 + 31028 16110 20675 20688 30626 30626 0.06001735714244205 NELVPRFVP 9 Unmodified _NELVPRFVP_ 0 0 0 REV__ENSG00000132357|ENST00000254691|CARD6 REV__ENSG00000132357|ENST00000254691|CARD6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 357.537953 1069.59203 -0.56316 -0.00020135 0.41255 0.0001475 -0.15061 -5.385E-05 357.5380338222796 60.417 0.66386 60.417 60.138 60.802 0 0.037484 0.00032325 NaN 10.8 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3055000 + 31029 16110 20675 20688 0.06001735714244205 NELVQVETY 9 Unmodified _NELVQVETY_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7716064453125 2 547.771854 1093.52915 -0.080891 -4.431E-05 -0.66929 -0.00036662 -0.75018 -0.00041093 547.7716497552359 105.36 0.45782 101.1 100.81 101.27 -4.2638 20 12 2 0 0 0 0.30618 3 20748 20713;20748;20765 31.268 6.6987 1 1043700 31030 6261 20676 20689 30627;30628;30629 30628 -0.01386874864465426 NELVQVETY 9 Unmodified _NELVQVETY_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7722778320312 2 547.771854 1093.52915 0.11535 6.3183E-05 -0.56987 -0.00031216 -0.45452 -0.00024897 547.7717361582354 105.52 0.42416 101.14 100.91 101.34 -4.3764 19 11 2 0 0 0 0.55539 1 20253 20253 16.149 1.3108 1 1320800 31031 6261 20676 20689 30630 30630 -0.01386874864465426 NELVQVETY 9 Unmodified _NELVQVETY_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7715454101562 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 105.33 1 101.24 100.74 101.74 -4.0913 0 0 0 0.080616 1 20260 20260 41.956 12.874 1 31032 6261 20676 20689 30631 30631 -0.01386874864465426 NELVVNKV 8 Unmodified _NELVVNKV_ 0 0 0 nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;PRR14L|p.E745Gfs*4|1|0.12|ENSG00000183530|chr22:31715607-31715608|-/T|frameshift_variant nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-3|PRR14L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22296142578125 2 457.768917 913.523281 -0.03379 -1.5468E-05 0.91695 0.00041975 0.88316 0.00040429 457.7690082113083 59.056 0.56818 59.056 58.827 59.396 0 23 15 2 0 0 0 0.15314 1 11302 11302 64.236 15.89 1 1788500 31033 6853 20677 20690 30632 30632 0.06306071414530834 NELVVNKV 8 Unmodified _NELVVNKV_ 0 0 0 nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;PRR14L|p.E745Gfs*4|1|0.12|ENSG00000183530|chr22:31715607-31715608|-/T|frameshift_variant nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-3|PRR14L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2386779785156 2 457.768917 913.523281 -0.056206 -2.5729E-05 0.33115 0.00015159 0.27495 0.00012586 457.7689946540661 61.715 0.45863 58.753 58.479 58.937 -2.9614 18 12 2 0 0 0 0.18066 1 11905 11905 64.236 22.142 1 2084600 31034 6853 20677 20690 30633 30633 0.06306071414530834 NELVVNKV 8 Unmodified _NELVVNKV_ 0 0 0 nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;PRR14L|p.E745Gfs*4|1|0.12|ENSG00000183530|chr22:31715607-31715608|-/T|frameshift_variant nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-3|PRR14L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2409362792969 2 457.768917 913.523281 0.075172 3.4411E-05 0.67802 0.00031038 0.7532 0.00034479 457.76901261837446 62.133 0.52951 58.763 58.568 59.098 -3.3694 25 14 2 0 0 0 0.10682 1 11606 11606 78.149 23.376 1 2228200 31035 6853 20677 20690 30634 30634 0.06306071414530834 NELVVNKV 8 Unmodified _NELVVNKV_ 0 0 0 nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;PRR14L|p.E745Gfs*4|1|0.12|ENSG00000183530|chr22:31715607-31715608|-/T|frameshift_variant nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-3|PRR14L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2243957519531 2 457.768917 913.523281 0.1996 9.1372E-05 0.062611 2.8662E-05 0.26221 0.00012003 457.7688813162953 62.013 0.51836 58.773 58.519 59.037 -3.2395 22 14 2 0 0 0 0.16805 1 11616 11616 71.922 24.174 1 1365800 31036 6853 20677 20690 30635 30635 0.06306071414530834 NEMALVQEL 9 Unmodified _NEMALVQEL_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6990966796875 2 523.762975 1045.5114 -0.038748 -2.0295E-05 -0.046056 -2.4123E-05 -0.084805 -4.4417E-05 523.7629114453088 154.4 1.0531 149.64 148.97 150.03 -4.7684 65 29 3 0 0 0 0.010502 1 30705 30705 103.42 53.486 1 8319900 31037 5033 20678 20691 30636 30636 -0.009539133909811426 NEMALVQEL 9 Unmodified _NEMALVQEL_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6976318359375 2 523.762975 1045.5114 -0.38149 -0.00019981 0.03331 1.7446E-05 -0.34818 -0.00018236 523.76300142356 154.98 0.99109 149.7 149.08 150.07 -5.2854 59 27 3 0 0 0 0.33094 1 30114 30114 29.841 7.1043 1 5945900 31038 5033 20678 20691 30637 30637 -0.009539133909811426 NEMALVQEL 9 Unmodified _NEMALVQEL_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.68994140625 2 523.762975 1045.5114 0.44684 0.00023404 -0.18689 -9.7888E-05 0.25994 0.00013615 523.7626869832507 154.84 0.96638 149.59 149.14 150.11 -5.2526 54 26 3 0 0 0 0.021293 3 30042 30040;30042;30084 91.085 66.738 1 5045200 31039 5033 20678 20691 30638;30639;30640 30639 -0.009539133909811426 NEMECSNC 8 Unmodified _NEMECSNC_ 0 0 0 REV__ACSL3|p.V658A|1|0.05|ENSG00000123983|chr2:222934655-222934655|T/C|missense_variant REV__ACSL3|p.V658A|1|0.05|ENSG00000123983|chr2:222934655-222934655|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2418518066406 2 465.14352 928.272488 NaN NaN NaN NaN NaN NaN NaN 45.322 1 42.456 41.956 42.956 -2.8653 0 0 0 0.21486 1 8224 8224 5.2307 0 1 + 31040 12922 20679 20692 30641 30641 -0.19451759956268688 NEMECSNC 8 Unmodified _NEMECSNC_ 0 0 0 REV__ACSL3|p.V658A|1|0.05|ENSG00000123983|chr2:222934655-222934655|T/C|missense_variant REV__ACSL3|p.V658A|1|0.05|ENSG00000123983|chr2:222934655-222934655|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.23931884765625 2 465.14352 928.272488 NaN NaN NaN NaN NaN NaN NaN 45.487 1 42.62 42.12 43.12 -2.8666 0 0 0 0.21486 1 8256 8256 5.2307 0 1 + 31041 12922 20679 20692 30642 30642 -0.19451759956268688 NEMFLIGP 8 Unmodified _NEMFLIGP_ 0 0 0 REV__ENST00000414193.2_1_X:100698832-100699039:-|nuORF REV__ENST00000414193.2_1_X:100698832-100699039:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2400817871094 2 460.730946 919.447339 -0.099812 -4.5987E-05 2.1469 0.00098914 2.0471 0.00094315 460.73295849351075 23.397 0.18362 21.944 21.852 22.035 -1.4535 6 4 2 0 0 0 0.98792 1 3756 3756 9.3474 0 1 182060 + 31042 21443 20680 20693 30643 30643 -0.01560648757265426 NEMLVKSQF 9 Unmodified _NEMLVKSQF_ 0 0 0 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;nc|ENSG00000133657|Q9H7F0-2|ATP13A3 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7716064453125 2 548.278792 1094.54303 0.24773 0.00013582 -0.22827 -0.00012515 0.019463 1.0671E-05 548.2787679390747 87.427 0.49046 87.427 87.152 87.642 0 21 13 2 0 0 0 0.30018 1 17038 17038 37.075 19.962 1 2498100 31043 263 20681 20694 30644 30644 -0.00045920637035123946 NEMLVKSQF 9 Unmodified _NEMLVKSQF_ 0 0 0 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;nc|ENSG00000133657|Q9H7F0-2|ATP13A3 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7899780273438 2 548.278792 1094.54303 0.13946 7.6465E-05 -0.018597 -1.0196E-05 0.12087 6.6269E-05 548.2786945805485 91.217 0.58215 87.292 86.962 87.544 -3.9251 28 16 2 0 0 0 0.14836 1 17868 17868 55.235 28.967 1 3084700 31044 263 20681 20694 30645 30645 -0.00045920637035123946 NEMLVKSQF 9 Unmodified _NEMLVKSQF_ 0 0 0 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;nc|ENSG00000133657|Q9H7F0-2|ATP13A3 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.771484375 2 548.278792 1094.54303 0.33781 0.00018521 -0.17491 -9.5901E-05 0.1629 8.9312E-05 548.2786613551799 91.4 0.61366 87.306 87.019 87.633 -4.0946 32 17 2 0 0 0 0.17734 1 17401 17401 40.239 13.356 1 2867900 31045 263 20681 20694 30646 30646 -0.00045920637035123946 NEMLVKSQF 9 Unmodified _NEMLVKSQF_ 0 0 0 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;nc|ENSG00000133657|Q9H7F0-2|ATP13A3 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7720336914062 2 548.278792 1094.54303 0.21115 0.00011577 0.021399 1.1733E-05 0.23255 0.0001275 548.2786849156956 91.135 0.72482 87.327 86.927 87.652 -3.8083 37 20 3 0 0 0 0.19359 1 17456 17456 47.749 7.7914 1 1772900 31046 263 20681 20694 30647 30647 -0.00045920637035123946 NEMPYLLW 8 Unmodified _NEMPYLLW_ 0 0 0 ENSG00000138892|ENST00000433387|TTLL8;nc|ENSG00000138892|A6PVC2-2|TTLL8;nc|ENSG00000138892|A6PVC2|TTLL8 ENSG00000138892|ENST00000433387|TTLL8 ENSG00000138892|ENST00000433387|TTLL8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2606811523438 2 533.257328 1064.5001 NaN NaN NaN NaN NaN NaN NaN 39.62 1 37.178 36.678 37.678 -2.4419 0 0 0 0.19954 1 7079 7079 24.674 6.5389 1 31047 4217 20682 20695 30648 30648 -0.029566906944637594 NEMRRIARHFR 11 Unmodified _NEMRRIARHFR_ 0 0 0 ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant ENSG00000106346|ENST00000306177|USP42 ENSG00000106346|ENST00000306177|USP42 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 496.2275085449219 3 495.937116 1484.78952 -0.13777 -6.8327E-05 3.2055 0.0015897 3.0677 0.0015214 495.9390076077256 67.259 0.2838 67.259 67.049 67.333 0 11 7 2 0 0 0 0.88895 1 12966 12966 1.4074 1.4074 1 1130300 31048 2379 20683 20696 30649 30649 0.06651431705222421 NEMRRIARHFR 11 Unmodified _NEMRRIARHFR_ 0 0 0 ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant ENSG00000106346|ENST00000306177|USP42 ENSG00000106346|ENST00000306177|USP42 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 495.937116 1484.78952 -0.054749 -2.7152E-05 3.9241 0.0019461 3.8693 0.0019189 495.93911863452905 70.318 0.42525 67.068 66.825 67.25 -3.2492 -0.075409 0.00037405 NaN 1.4074 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1599700 31049 2379 20683 20696 0.06651431705222421 NEMRRIARHFR 11 Unmodified _NEMRRIARHFR_ 0 0 0 ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant ENSG00000106346|ENST00000306177|USP42 ENSG00000106346|ENST00000306177|USP42 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 495.937116 1484.78952 0.30833 0.00015291 4.5485 0.0022558 4.8568 0.0024087 496.2740264206633 70.684 0.31911 67.104 66.911 67.23 -3.5798 -0.039637 0.0013031 NaN 1.4074 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1198100 31050 2379 20683 20696 0.06651431705222421 NEMSAHQY 8 Unmodified _NEMSAHQY_ 0 0 0 nc|ENSG00000121289|Q96ST8-2|CEP89;ENSG00000121289|ENST00000305768|CEP89 nc|ENSG00000121289|Q96ST8-2|CEP89 nc|ENSG00000121289|Q96ST8-2|CEP89 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2700500488281 2 490.200541 978.38653 0.13328 6.5333E-05 1.5325 0.00075122 1.6658 0.00081656 490.20129257350135 24.76 0.51466 23.226 22.955 23.469 -1.5342 23 14 2 0 0 0 0.88839 1 4031 4031 22.736 11.096 1 818440 31051 3174 20684 20697 30650 30650 -0.10352785807504006 NEMSAHQY 8 Unmodified _NEMSAHQY_ 0 0 0 nc|ENSG00000121289|Q96ST8-2|CEP89;ENSG00000121289|ENST00000305768|CEP89 nc|ENSG00000121289|Q96ST8-2|CEP89 nc|ENSG00000121289|Q96ST8-2|CEP89 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.263916015625 2 490.200541 978.38653 0.12535 6.1448E-05 1.1527 0.00056504 1.278 0.00062649 490.20095907782934 49.682 0.79797 46.683 46.172 46.97 -2.999 32 22 2 0 0 0 0.86749 1 9062 9062 28.487 3.813 1 936080 31052 3174 20684 20697 30651 30651 -0.10352785807504006 NEMSAHQY 8 Unmodified _NEMSAHQY_ 0 0 0 nc|ENSG00000121289|Q96ST8-2|CEP89;ENSG00000121289|ENST00000305768|CEP89 nc|ENSG00000121289|Q96ST8-2|CEP89 nc|ENSG00000121289|Q96ST8-2|CEP89 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 490.200541 978.38653 0.21086 0.00010336 1.3236 0.00064881 1.5344 0.00075217 490.20128419210056 23.25 0.34912 23.25 23.131 23.48 0 0.019814 0.00019811 NaN 29.082 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 807470 31053 3174 20684 20697 -0.10352785807504006 NEMSAHQY 8 Unmodified _NEMSAHQY_ 0 0 0 nc|ENSG00000121289|Q96ST8-2|CEP89;ENSG00000121289|ENST00000305768|CEP89 nc|ENSG00000121289|Q96ST8-2|CEP89 nc|ENSG00000121289|Q96ST8-2|CEP89 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 490.200541 978.38653 1.1775 0.00057719 -0.064829 -3.1779E-05 1.1126 0.00054541 490.20055176510584 24.937 0.41685 23.289 23.025 23.442 -1.6482 0.058665 -0.0011631 NaN 29.082 19 11 3 NaN NaN NaN NaN 0 NaN NaN 0 898810 31054 3174 20684 20697 -0.10352785807504006 NEMSAHQY 8 Unmodified _NEMSAHQY_ 0 0 0 nc|ENSG00000121289|Q96ST8-2|CEP89;ENSG00000121289|ENST00000305768|CEP89 nc|ENSG00000121289|Q96ST8-2|CEP89 nc|ENSG00000121289|Q96ST8-2|CEP89 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 490.200541 978.38653 -0.42601 -0.00020883 1.6124 0.00079039 1.1864 0.00058156 490.2012829219163 25.009 0.38308 23.156 22.981 23.364 -1.8534 -0.074333 0.00048127 NaN 29.082 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 594440 31055 3174 20684 20697 -0.10352785807504006 NEMYVFCY 8 Unmodified _NEMYVFCY_ 0 0 0 ENSG00000136014|ENST00000258499|USP44;USP44|p.I184Nfs*19|1|0.39|ENSG00000136014|chr12:95533706-95533707|-/T|frameshift_variant ENSG00000136014|ENST00000258499|USP44 ENSG00000136014|ENST00000258499|USP44 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.04931640625 3 356.810356 1067.40924 -0.1992 -7.1077E-05 1.6685 0.00059533 1.4693 0.00052425 356.81103993642887 116.34 0.49841 111.98 111.67 112.16 -4.3585 18 13 2 0 0 0 1.0248 1 22392 22392 3.5965 2.1146 1 1318000 31056 3977 20685 20698 30652 30652 -0.12176902734245232 NENAAKIY 8 Unmodified _NENAAKIY_ 0 0 0 REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5421142578125 2 461.735074 921.455596 -0.011447 -5.2855E-06 0.39891 0.00018419 0.38746 0.00017891 461.73517576107133 62.407 0.94149 59.446 59.111 60.053 -2.9614 59 26 4 0 0 0 0.78482 1 12132 12132 32.305 1.0371 1 7440500 + 31057 16959 20686 20699 30653 30653 -0.008273785162828062 NENDFVEGY 9 Unmodified _NENDFVEGY_ 0 0 0 nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2;ENSG00000169826|ENST00000374466|CSGALNACT2 nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2 nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7827758789062 2 543.722361 1085.43017 0.3324 0.00018074 0.062259 3.3852E-05 0.39466 0.00021459 543.722348432501 85.644 0.53812 85.644 85.357 85.895 0 21 14 2 0 0 0 0.089388 1 16734 16734 66.457 43.72 1 1989500 31058 6009 20687 20700 30654 30654 -0.10912897829371104 NENDFVEGY 9 Unmodified _NENDFVEGY_ 0 0 0 nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2;ENSG00000169826|ENST00000374466|CSGALNACT2 nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2 nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7947387695312 2 543.722361 1085.43017 0.14927 8.1164E-05 -0.35542 -0.00019325 -0.20615 -0.00011209 543.7223833190111 89.843 0.6088 85.984 85.795 86.404 -3.8595 26 16 2 0 0 0 0.27865 1 17602 17602 41.84 22.401 1 1851800 31059 6009 20687 20700 30655 30655 -0.10912897829371104 NENDFVEGY 9 Unmodified _NENDFVEGY_ 0 0 0 nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2;ENSG00000169826|ENST00000374466|CSGALNACT2 nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2 nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.722361 1085.43017 0.26793 0.00014568 0.056381 3.0656E-05 0.32431 0.00017633 543.7223003878478 89.764 0.62522 85.986 85.738 86.363 -3.7779 0.11488 0.00012394 NaN 66.457 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2114300 31060 6009 20687 20700 -0.10912897829371104 NENFIATV 8 Unmodified _NENFIATV_ 0 0 0 ENSG00000140382|ENST00000336216|HMG20A ENSG00000140382|ENST00000336216|HMG20A ENSG00000140382|ENST00000336216|HMG20A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7500915527344 2 454.229625 906.444697 -0.054976 -2.4972E-05 0.1632 7.4129E-05 0.10822 4.9157E-05 454.2297632391578 115.89 0.82681 111.41 111.07 111.9 -4.486 37 23 2 0 0 0 0.64118 1 22808 22808 13.042 0 1 2063100 31061 4294 20688 20701 30656 30656 -0.012267808905789934 NENHLVITF 9 Unmodified _NENHLVITF_ 0 0 0 REV__ENST00000580170.5_1_18:8244157-8247900:+|nuORF REV__ENST00000580170.5_1_18:8244157-8247900:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7841186523438 2 543.782556 1085.55056 0.36768 0.00019994 -0.20694 -0.00011253 0.16074 8.7405E-05 543.782323939369 90.508 0.77071 86.463 86.021 86.792 -4.0443 48 21 3 0 0 0 0.45972 1 17192 17192 0.37959 0.1142 1 4689600 + 31062 23234 20689 20702 30657 30657 0.011205549548776617 NENLHPPVF 9 Unmodified _NENLHPPVF_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2703857421875 2 533.769448 1065.52434 0.65655 0.00035045 -0.16788 -8.9611E-05 0.48867 0.00026083 533.769384193564 111.62 0.7007 107.39 107.21 107.91 -4.2289 31 19 2 0 0 0 0.76271 1 21510 21510 14.838 4.0143 1 1261700 31063 1659 20690 20703 30658 30658 -0.005797142165647529 NENMVAKV 8 Unmodified _NENMVAKV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.76177978515625 2 452.731477 903.448402 0.45335 0.00020524 -0.59634 -0.00026998 -0.14299 -6.4736E-05 452.7312279238324 42.018 1.5741 42.018 41.129 42.703 0 117 44 4 0 0 0 0.07456 4 7839 7837;7839;7869;7871 79.86 61.487 1 51888000 31064 7487 20691 20704 30659;30660;30661;30662 30660 -0.007184343883636757 NENMVAKV 8 Unmodified _NENMVAKV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7476501464844 2 452.731477 903.448402 -0.14412 -6.5249E-05 0.035564 1.6101E-05 -0.10856 -4.9148E-05 452.73151459098057 44.52 1.3764 41.729 41.186 42.562 -2.79 98 38 5 0 0 0 0.14695 2 8388 8327;8388 64.86 35.02 1 69227000 31065 7487 20691 20704 30663;30664 30664 -0.007184343883636757 NENMVAKV 8 Unmodified _NENMVAKV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76177978515625 2 452.731477 903.448402 -0.081381 -3.6844E-05 -0.16402 -7.4256E-05 -0.2454 -0.0001111 452.73146943436024 44.474 1.6417 41.708 41.185 42.827 -2.7661 122 46 4 0 0 0 0.077776 2 8022 7994;8022 81.89 27.117 1 60901000 31066 7487 20691 20704 30665;30666 30666 -0.007184343883636757 NENMVAKV 8 Unmodified _NENMVAKV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.76934814453125 2 452.731477 903.448402 -0.13542 -6.1308E-05 0.043419 1.9657E-05 -0.091998 -4.165E-05 452.73149420802986 44.474 1.6827 41.726 41.147 42.83 -2.7475 116 47 4 0 0 0 0.19607 1 8139 8139 46.021 13.715 1 54948000 31067 7487 20691 20704 30667 30667 -0.007184343883636757 NENMVAKV 8 Oxidation (M) _NENM(Oxidation (M))VAKV_ NENM(1)VAKV NENM(110)VAKV 0 0 1 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.247314453125 2 460.728935 919.443317 0.21231 9.7817E-05 0.43207 0.00019907 0.64438 0.00029688 460.7291751360329 21.821 0.52016 21.821 21.669 22.189 0 35 14 4 0 0 0 0.058817 1 3656 3656 110.67 45.44 1 8637000 31068 7487 20691 20705 30668 30668 102 -0.019627382509725066 NENMVAKV 8 Oxidation (M) _NENM(Oxidation (M))VAKV_ NENM(1)VAKV NENM(120)VAKV 0 0 1 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2483825683594 2 460.728935 919.443317 0.20727 9.5494E-05 0.12405 5.7154E-05 0.33132 0.00015265 460.72911532628854 21.55 0.51005 21.55 21.159 21.669 0 29 14 4 0 0 0 4.7765E-05 1 3612 3612 122.18 56.944 1 8217300 31069 7487 20691 20705 30669 30669 102 -0.019627382509725066 NENMVAKV 8 Oxidation (M) _NENM(Oxidation (M))VAKV_ NENM(1)VAKV NENM(60)VAKV 0 0 1 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2315368652344 2 460.728935 919.443317 0.68661 0.00031634 0.20831 9.5972E-05 0.89491 0.00041231 460.7290368876765 23.21 0.46575 21.657 21.474 21.94 -1.5532 27 12 3 0 0 0 0.1228 1 4007 4007 60.074 36.284 1 3419900 31070 7487 20691 20705 30670 30670 102 -0.019627382509725066 NENMVAKV 8 Oxidation (M) _NENM(Oxidation (M))VAKV_ NENM(1)VAKV NENM(110)VAKV 0 0 1 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2277526855469 2 460.728935 919.443317 0.63229 0.00029131 -0.20211 -9.3119E-05 0.43018 0.0001982 460.72882374909324 22.874 0.37645 21.321 21.098 21.474 -1.5532 30 10 4 0 0 0 0.0028501 1 3924 3924 110.67 35.746 1 4444000 31071 7487 20691 20705 30671 30671 102 -0.019627382509725066 NENMVAKV 8 Oxidation (M) _NENM(Oxidation (M))VAKV_ NENM(1)VAKV NENM(110)VAKV 0 0 1 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.246337890625 2 460.728935 919.443317 -0.11882 -5.4744E-05 0.76 0.00035015 0.64118 0.00029541 460.7292726308311 23.121 0.41408 21.667 21.473 21.888 -1.4535 25 11 3 0 0 0 0.058817 1 3713 3713 110.67 45.44 1 3759200 31072 7487 20691 20705 30672 30672 102 -0.019627382509725066 NENMVAKV 8 Oxidation (M) _NENM(Oxidation (M))VAKV_ NENM(1)VAKV NENM(54)VAKV 0 0 1 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22808837890625 2 460.728935 919.443317 -0.13877 -6.3937E-05 0.51529 0.00023741 0.37652 0.00017347 460.72915968257803 22.816 0.38858 21.362 21.119 21.507 -1.4535 26 10 4 0 0 0 0.4122 1 3645 3645 53.833 17.706 1 2952800 31073 7487 20691 20705 30673 30673 102 -0.019627382509725066 NENMVAKV 8 Oxidation (M) _NENM(Oxidation (M))VAKV_ NENM(1)VAKV NENM(110)VAKV 0 0 1 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2460632324219 2 460.728935 919.443317 -0.43418 -0.00020004 1.0881 0.00050133 0.65395 0.00030129 460.72942313080915 23.379 0.45205 21.59 21.392 21.844 -1.7886 28 12 3 0 0 0 0.058817 1 3759 3759 110.67 45.44 1 2483600 31074 7487 20691 20705 30674 30674 102 -0.019627382509725066 NENPTLLGV 9 Unmodified _NENPTLLGV_ 0 0 0 ENSG00000026652|ENST00000320285|AGPAT4;nc|ENSG00000026652|Q9NRZ5-2|AGPAT4;AGPAT4|p.R303Gfs*7|1|0.33|ENSG00000026652|chr6:161139557-161139557|G/-|frameshift_variant ENSG00000026652|ENST00000320285|AGPAT4 ENSG00000026652|ENST00000320285|AGPAT4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74334716796875 2 478.756007 955.497461 NaN NaN NaN NaN NaN NaN NaN 121.04 1 116.51 116.01 117.01 -4.5305 0 0 0 0.10991 1 23307 23307 36.506 14.76 1 31075 1144 20692 20706 30675 30675 0.01793177172248761 NENSTKVK 8 Unmodified _NENSTKVK_ 0 0 0 REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1 REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2483825683594 2 460.245806 918.47706 0.21927 0.00010092 1.1469 0.00052786 1.3662 0.00062878 460.24649881476734 21.585 0.27703 21.585 21.46 21.737 0 9 7 2 0 0 0 0.49114 1 3612 3612 28.487 3.813 1 490330 + 31076 24952 20693 20707 30676 30676 0.014560065124214816 NENSVKLWP 9 Unmodified _NENSVKLWP_ 0 0 0 REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7844848632812 2 543.782556 1085.55056 0.74768 0.00040658 1.6238 0.00088299 2.3715 0.0012896 543.7835739386302 102.22 1.5705 102.22 101.33 102.9 0 122 44 4 0 0 0 0.42844 1 20158 20158 24.021 4.7636 1 22701000 + 31077 19189 20694 20708 30677 30677 0.01120554954900399 NENVLTVTA 9 Unmodified _NENVLTVTA_ 0 0 0 ENSG00000115827|ENST00000375255|DCAF17;nc|ENSG00000115827|Q5H9S7-2|DCAF17 ENSG00000115827|ENST00000375255|DCAF17 ENSG00000115827|ENST00000375255|DCAF17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25506591796875 2 480.753464 959.492375 0.10199 4.9033E-05 0.21065 0.00010127 0.31264 0.0001503 480.75363635957405 58.645 0.63677 55.393 54.996 55.632 -3.2517 30 17 2 0 0 0 0.52396 1 10870 10870 18.146 0.011366 1 1652300 31078 2887 20695 20709 30678 30678 0.011008733096105061 NENYAGIAA 9 Unmodified _NENYAGIAA_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.524169921875 2 461.716882 921.41921 -0.11212 -5.1769E-05 0.42166 0.00019469 0.30953 0.00014292 461.71697119344446 60.738 0.63122 60.738 60.416 61.047 0 30 17 2 0 0 0 0.66788 1 11692 11692 17.113 0 1 2507000 31079 4065 20696 20710 30679 30679 -0.04464255412995044 NEPAVEEK 8 Unmodified _NEPAVEEK_ 0 0 0 ENST00000477776.5_1_6:127588160-127601415:+|nuORF;ENST00000610153.1_1_6:127588160-127601415:+|nuORF ENST00000477776.5_1_6:127588160-127601415:+|nuORF ENST00000477776.5_1_6:127588160-127601415:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22564697265625 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 119.87 1 115.23 114.73 115.73 -4.645 0 0 0 0.23538 1 23006 23006 0.25148 0.17821 1 31080 10307 20697 20711 30680 30680 -0.0261138861579866 NEPEVGIDECF 11 Unmodified _NEPEVGIDECF_ 0 0 0 REV__ENST00000507659.5_1_4:52751085-52765438:+|nuORF REV__ENST00000507659.5_1_4:52751085-52765438:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 626.2625122070312 2 626.263536 1250.51252 NaN NaN NaN NaN NaN NaN NaN 54.513 1 51.63 51.13 52.13 -2.8837 0 0 0 0.23379 1 10407 10407 5.2969 0.39987 1 + 31081 13650 20698 20712 30681 30681 -0.10271743812745626 NEPGESEFSA 10 Unmodified _NEPGESEFSA_ 0 0 0 REV__ENSG00000198915|ENST00000395810|RASGEF1A REV__ENSG00000198915|ENST00000395810|RASGEF1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2794189453125 2 533.719818 1065.42508 0.96554 0.00051533 1.8855 0.0010063 2.851 0.0015216 533.7211354534545 23.836 0.30846 22.283 22.151 22.46 -1.5532 11 8 2 0 0 0 0.88533 1 4138 4138 13.042 3.695 1 260370 + 31082 19481 20699 20713 30682 30682 -0.10501201691977258 NEPKRKLPV 9 Unmodified _NEPKRKLPV_ 0 0 0 nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2763061523438 2 540.82984 1079.64513 0.33258 0.00017987 3.2833 0.0017757 3.6159 0.0019556 540.8311740678059 138.87 0.24861 134.02 133.86 134.11 -4.8492 10 6 2 0 0 0 0.80521 1 26780 26780 6.7232 0 1 1406400 31083 2433 20700 20714 30683 30683 0.10849113496897189 NEPLDMYSYL 10 Unmodified _NEPLDMYSYL_ 0 0 0 nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B nc|ENSG00000156970|O60566-3|BUB1B nc|ENSG00000156970|O60566-3|BUB1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7693481445312 2 622.778822 1243.54309 NaN NaN NaN NaN NaN NaN NaN 162.88 1 157.7 157.2 158.2 -5.1878 0 0 0 0.22588 1 31654 31654 5.7319 0 1 31084 5113 20701 20715 30684 30684 -0.06893965427684634 NEPSVKEPG 9 Unmodified _NEPSVKEPG_ 0 0 0 REV__nc|ENSG00000197782|O75290-2|ZNF780A REV__nc|ENSG00000197782|O75290-2|ZNF780A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7222900390625 2 478.737814 955.461075 -0.39874 -0.00019089 0.47055 0.00022527 0.071816 3.4381E-05 478.7381710757922 36.078 0.38827 33.684 33.52 33.908 -2.3938 16 10 2 0 0 0 0.62921 1 6688 6688 30.637 10.183 1 1080400 + 31085 19363 20702 20716 30685 30685 -0.018436997244634767 NEQDKIDAY 9 Unmodified _NEQDKIDAY_ 0 0 0 ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3;MIA3|p.H496Vfs*10|1|0.04|ENSG00000154305|chr1:222628705-222628706|-/GTTTCCC|frameshift_variant;MIA3|p.N746Kfs*10|1|0.35|ENSG00000154305|chr1:222629450-222629451|-/A|frameshift_variant;MIA3|p.V974Sfs*4|1|0.36|ENSG00000154305|chr1:222630134-222630135|-/A|frameshift_variant;MIA3|p.M993Nfs*3|1|0.25|ENSG00000154305|chr1:222630191-222630192|-/A|frameshift_variant;MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant ENST00000470521.1_1_1:222791452-222819114:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7733764648438 2 548.251286 1094.48802 0.38823 0.00021285 -0.36971 -0.00020269 0.018522 1.0154E-05 548.2511822713085 36.975 0.34706 36.975 36.779 37.126 0 11 9 2 0 0 0 0.13841 1 6822 6822 63.961 24.003 1 1160700 31086 5006;12143 20703 20717 30686 30686 -0.05544635903947892 NEQDKIDAY 9 Unmodified _NEQDKIDAY_ 0 0 0 ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3;MIA3|p.H496Vfs*10|1|0.04|ENSG00000154305|chr1:222628705-222628706|-/GTTTCCC|frameshift_variant;MIA3|p.N746Kfs*10|1|0.35|ENSG00000154305|chr1:222629450-222629451|-/A|frameshift_variant;MIA3|p.V974Sfs*4|1|0.36|ENSG00000154305|chr1:222630134-222630135|-/A|frameshift_variant;MIA3|p.M993Nfs*3|1|0.25|ENSG00000154305|chr1:222630191-222630192|-/A|frameshift_variant;MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant ENST00000470521.1_1_1:222791452-222819114:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7738647460938 2 548.251286 1094.48802 -0.090548 -4.9643E-05 0.27198 0.00014912 0.18144 9.9473E-05 548.2514083043733 39.603 0.4152 37.054 36.861 37.276 -2.5491 25 11 3 0 0 0 0.12542 1 7347 7347 56.177 20.133 1 1501000 31087 5006;12143 20703 20717 30687 30687 -0.05544635903947892 NEQDKIDAY 9 Unmodified _NEQDKIDAY_ 0 0 0 ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3;MIA3|p.H496Vfs*10|1|0.04|ENSG00000154305|chr1:222628705-222628706|-/GTTTCCC|frameshift_variant;MIA3|p.N746Kfs*10|1|0.35|ENSG00000154305|chr1:222629450-222629451|-/A|frameshift_variant;MIA3|p.V974Sfs*4|1|0.36|ENSG00000154305|chr1:222630134-222630135|-/A|frameshift_variant;MIA3|p.M993Nfs*3|1|0.25|ENSG00000154305|chr1:222630191-222630192|-/A|frameshift_variant;MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant ENST00000470521.1_1_1:222791452-222819114:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7738647460938 2 548.251286 1094.48802 0.21245 0.00011647 -0.2473 -0.00013558 -0.034857 -1.911E-05 548.2512907338161 39.485 0.4236 37.08 36.823 37.247 -2.4049 24 11 3 0 0 0 0.42289 1 7014 7014 19.257 3.4098 1 1173100 31088 5006;12143 20703 20717 30688 30688 -0.05544635903947892 NEQDKIDAY 9 Unmodified _NEQDKIDAY_ 0 0 0 ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3;MIA3|p.H496Vfs*10|1|0.04|ENSG00000154305|chr1:222628705-222628706|-/GTTTCCC|frameshift_variant;MIA3|p.N746Kfs*10|1|0.35|ENSG00000154305|chr1:222629450-222629451|-/A|frameshift_variant;MIA3|p.V974Sfs*4|1|0.36|ENSG00000154305|chr1:222630134-222630135|-/A|frameshift_variant;MIA3|p.M993Nfs*3|1|0.25|ENSG00000154305|chr1:222630191-222630192|-/A|frameshift_variant;MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.E729Nfs*3|1|0.09|ENSG00000154305|chr1:222629403-222629403|A/-|frameshift_variant ENST00000470521.1_1_1:222791452-222819114:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 548.251286 1094.48802 0.044629 2.4468E-05 -0.41357 -0.00022674 -0.36894 -0.00020227 548.2511403638058 39.538 0.4594 37.096 36.856 37.316 -2.4419 0.044573 -0.00021566 NaN 56.177 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1216400 31089 5006;12143 20703 20717 -0.05544635903947892 NEQDLGIQY 9 Unmodified _NEQDLGIQY_ 0 0 0 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2691040039062 2 540.253828 1078.4931 0.096566 5.217E-05 0.022914 1.2379E-05 0.11948 6.455E-05 540.2538311219446 91.462 1.4677 91.462 91.009 92.477 0 142 41 5 0 0 0 2.3519E-05 2 17851 17851;17941 134.3 59.367 1 259550000 31090 742 20704 20718 30689;30690 30689 -0.04300332041339061 NEQDLGIQY 9 Unmodified _NEQDLGIQY_ 0 0 0 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2750854492188 2 540.253828 1078.4931 0.23926 0.00012926 -0.20806 -0.0001124 0.031206 1.6859E-05 540.2537301912851 95.775 1.4047 91.726 91.238 92.643 -4.0496 137 40 5 0 0 0 0.016216 2 18848 18848;18862 96.111 50.411 1 261870000 31091 742 20704 20718 30691;30692 30691 -0.04300332041339061 NEQDLGIQY 9 Unmodified _NEQDLGIQY_ 0 0 0 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2686767578125 2 540.253828 1078.4931 0.22652 0.00012238 -0.10954 -5.918E-05 0.11697 6.3196E-05 540.2537697457068 95.826 1.747 91.635 91.245 92.992 -4.1911 148 50 5 0 0 0 0.0071415 2 18283 18245;18283 110.67 60.742 1 219960000 31092 742 20704 20718 30693;30694 30694 -0.04300332041339061 NEQDLGIQY 9 Unmodified _NEQDLGIQY_ 0 0 0 CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.253828 1078.4931 0.06882 3.718E-05 0.045838 2.4764E-05 0.11466 6.1945E-05 540.2538834118516 95.584 1.9701 91.703 91.228 93.198 -3.881 0.071951 9.942E-05 NaN 134.3 176 56 5 NaN NaN NaN NaN 0 NaN NaN 0 280450000 31093 742 20704 20718 -0.04300332041339061 NEQFAIRRF 9 Unmodified _NEQFAIRRF_ 0 0 0 nc|ENSG00000101224|P30305-3|CDC25B;CDC25B|p.G524Afs*22|1|0.23|ENSG00000101224|chr20:3804645-3804645|A/-|frameshift_variant;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B nc|ENSG00000101224|P30305-3|CDC25B nc|ENSG00000101224|P30305-3|CDC25B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2537841796875 2 590.814722 1179.61489 0.43881 0.00025926 -0.77941 -0.00046049 -0.3406 -0.00020123 590.8143349714386 91.371 0.34282 87.446 87.238 87.581 -3.9251 13 9 2 0 0 0 0.47479 1 17876 17876 30.637 15.679 1 1049400 31094 453 20705 20719 30695 30695 0.032267548316895045 NEQFAIRRF 9 Unmodified _NEQFAIRRF_ 0 0 0 nc|ENSG00000101224|P30305-3|CDC25B;CDC25B|p.G524Afs*22|1|0.23|ENSG00000101224|chr20:3804645-3804645|A/-|frameshift_variant;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B nc|ENSG00000101224|P30305-3|CDC25B nc|ENSG00000101224|P30305-3|CDC25B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 590.814722 1179.61489 0.26496 0.00015654 -1.2204 -0.00072102 -0.95541 -0.00056447 590.8135933362121 87.56 0.17633 87.56 87.466 87.642 0 0.057086 -0.00026145 NaN 24.021 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 764760 31095 453 20705 20719 0.032267548316895045 NEQHFTEV 8 Unmodified _NEQHFTEV_ 0 0 0 nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;TP53BP2|p.P92Lfs*6|1|0.52|ENSG00000143514|chr1:223814254-223814254|G/-|frameshift_variant;ENST00000472180.1_1_1:224001936-224033382:-|nuORF nc|ENSG00000143514|Q13625|TP53BP2 nc|ENSG00000143514|Q13625|TP53BP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 502.74505615234375 2 502.227613 1002.44067 -0.041255 -2.0719E-05 -0.021479 -1.0787E-05 -0.062734 -3.1507E-05 502.22758610054194 44.854 0.81475 42.064 41.605 42.42 -2.79 49 22 3 0 0 0 8448 1 8394 8394 20.454 10.38 1 3717200 31096 4499 20706 20720 30696 30696 -0.06044870384289425 NEQHFTEV 8 Unmodified _NEQHFTEV_ 0 0 0 nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;TP53BP2|p.P92Lfs*6|1|0.52|ENSG00000143514|chr1:223814254-223814254|G/-|frameshift_variant;ENST00000472180.1_1_1:224001936-224033382:-|nuORF nc|ENSG00000143514|Q13625|TP53BP2 nc|ENSG00000143514|Q13625|TP53BP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 502.227613 1002.44067 0.40679 0.0002043 -0.19586 -9.8366E-05 0.21093 0.00010593 502.2274928604099 42.031 0.66326 42.031 41.653 42.316 0 -0.032522 -0.00020571 NaN 20.454 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3897800 31097 4499 20706 20720 -0.06044870384289425 NEQHFTEV 8 Unmodified _NEQHFTEV_ 0 0 0 nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;TP53BP2|p.P92Lfs*6|1|0.52|ENSG00000143514|chr1:223814254-223814254|G/-|frameshift_variant;ENST00000472180.1_1_1:224001936-224033382:-|nuORF nc|ENSG00000143514|Q13625|TP53BP2 nc|ENSG00000143514|Q13625|TP53BP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 502.227613 1002.44067 -0.24598 -0.00012354 0.24886 0.00012498 0.0028758 1.4443E-06 502.2278115538539 44.855 0.66989 42.089 41.664 42.334 -2.7661 0.025194 0.00024099 NaN 20.454 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3612900 31098 4499 20706 20720 -0.06044870384289425 NEQHFTEV 8 Unmodified _NEQHFTEV_ 0 0 0 nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;TP53BP2|p.P92Lfs*6|1|0.52|ENSG00000143514|chr1:223814254-223814254|G/-|frameshift_variant;ENST00000472180.1_1_1:224001936-224033382:-|nuORF nc|ENSG00000143514|Q13625|TP53BP2 nc|ENSG00000143514|Q13625|TP53BP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 502.227613 1002.44067 -0.23025 -0.00011564 0.14979 7.5231E-05 -0.080456 -4.0407E-05 502.22769672371936 44.818 0.73582 42.071 41.674 42.41 -2.7475 0.0071415 0.00014148 NaN 20.454 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3508100 31099 4499 20706 20720 -0.06044870384289425 NEQMKEIFKKF 11 Unmodified _NEQMKEIFKKF_ 0 0 0 tr|U7T509|U7T509_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00265PE=4SV=1 tr|U7T509|U7T509_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00265PE=4SV=1 tr|U7T509|U7T509_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00265PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23919677734375 3 481.255117 1440.74352 NaN NaN NaN NaN NaN NaN NaN 119.77 1 115.13 114.63 115.63 -4.645 0 0 0 0.22632 1 22987 22987 0.00056442 0 1 31100 26445 20707 20721 30697 30697 0.0407792895973671 NEQPLQNGF 9 Unmodified _NEQPLQNGF_ 0 0 0 ENST00000498078.1_1_13:41303510-41323454:-|nuORF;ENSG00000102738|ENST00000323563|MRPS31 ENST00000498078.1_1_13:41303510-41323454:-|nuORF ENST00000498078.1_1_13:41303510-41323454:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.693603515625 2 523.748713 1045.48287 -0.40388 -0.00021153 -0.6251 -0.00032739 -1.029 -0.00053892 524.2498478990393 83.931 0.50006 80.022 79.678 80.178 -3.9093 21 13 2 0 0 0 0.77734 1 15969 15969 5.7319 0 1 1851600 31101 2142 20708 20722 30698 30698 -0.038048949759058814 NEQSLEQVF 9 Unmodified _NEQSLEQVF_ 0 0 0 CIRBP|p.T17A|1|0.45|ENSG00000099622|chr19:1270982-1270982|A/G|missense_variant;nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP CIRBP|p.T17A|1|0.45|ENSG00000099622|chr19:1270982-1270982|A/G|missense_variant CIRBP|p.T17A|1|0.45|ENSG00000099622|chr19:1270982-1270982|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7703247070312 2 547.261653 1092.50875 0.32027 0.00017527 -0.09818 -5.373E-05 0.22209 0.00012154 547.2616703617356 117.93 0.8501 117.93 117.48 118.33 0 48 23 3 0 0 0 0.15274 1 23288 23288 43.772 25.626 1 6466800 31102 562 20709 20723 30699 30699 -0.03380045524295383 NEQSLEQVF 9 Unmodified _NEQSLEQVF_ 0 0 0 CIRBP|p.T17A|1|0.45|ENSG00000099622|chr19:1270982-1270982|A/G|missense_variant;nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP CIRBP|p.T17A|1|0.45|ENSG00000099622|chr19:1270982-1270982|A/G|missense_variant CIRBP|p.T17A|1|0.45|ENSG00000099622|chr19:1270982-1270982|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7740478515625 2 547.261653 1092.50875 0.52806 0.00028899 -0.3014 -0.00016495 0.22666 0.00012404 547.2614541283824 122.69 0.86372 117.96 117.54 118.4 -4.731 55 24 3 0 0 0 0.019708 2 23590 23587;23590 92.653 79.86 1 6872400 31103 562 20709 20723 30700;30701 30701 -0.03380045524295383 NEQSLEQVF 9 Unmodified _NEQSLEQVF_ 0 0 0 CIRBP|p.T17A|1|0.45|ENSG00000099622|chr19:1270982-1270982|A/G|missense_variant;nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP CIRBP|p.T17A|1|0.45|ENSG00000099622|chr19:1270982-1270982|A/G|missense_variant CIRBP|p.T17A|1|0.45|ENSG00000099622|chr19:1270982-1270982|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7833251953125 2 547.261653 1092.50875 0.38162 0.00020884 -0.2806 -0.00015356 0.10101 5.5281E-05 547.2614577462983 122.48 0.85448 117.95 117.55 118.4 -4.5305 61 23 4 0 0 0 0.02941 1 23573 23573 92.653 52.696 1 8155100 31104 562 20709 20723 30702 30702 -0.03380045524295383 NEQSLEQVF 9 Unmodified _NEQSLEQVF_ 0 0 0 CIRBP|p.T17A|1|0.45|ENSG00000099622|chr19:1270982-1270982|A/G|missense_variant;nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP CIRBP|p.T17A|1|0.45|ENSG00000099622|chr19:1270982-1270982|A/G|missense_variant CIRBP|p.T17A|1|0.45|ENSG00000099622|chr19:1270982-1270982|A/G|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.261653 1092.50875 0.40457 0.00022141 -0.36652 -0.00020058 0.038053 2.0825E-05 547.2614958466351 122.52 0.81257 117.97 117.56 118.38 -4.5476 0.019806 -0.00010833 NaN 92.653 46 22 3 NaN NaN NaN NaN 0 NaN NaN 0 8671900 31105 562 20709 20723 -0.03380045524295383 NEQVVFSH 8 Unmodified _NEQVVFSH_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2352294921875 2 480.232699 958.450845 0.22755 0.00010928 -0.046688 -2.2421E-05 0.18086 8.6854E-05 480.2326403844647 43.611 0.7974 43.611 43.19 43.987 0 52 22 3 0 0 0 0.089098 2 8172 8128;8172 65.235 48.346 1 7938400 31106 4961;4959;1113;6979 20710 20724 30703;30704 30704 -0.030042626590443433 NEQVVFSH 8 Unmodified _NEQVVFSH_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23590087890625 2 480.232699 958.450845 -0.0047688 -2.2902E-06 -0.073057 -3.5085E-05 -0.077826 -3.7375E-05 480.2326641619559 46.455 0.69587 43.614 43.276 43.972 -2.8409 54 19 4 0 0 0 0.07389 4 8782 8720;8736;8772;8782 71.134 29.039 1 13400000 31107 4961;4959;1113;6979 20710 20724 30705;30706;30707;30708 30708 -0.030042626590443433 NEQVVFSH 8 Unmodified _NEQVVFSH_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23541259765625 2 480.232699 958.450845 0.0085158 4.0896E-06 -0.44401 -0.00021323 -0.4355 -0.00020914 480.2326558946456 46.51 0.73491 43.645 43.31 44.045 -2.8653 51 20 3 0 0 0 0.07389 2 8438 8438;8488 71.134 29.039 1 10278000 31108 4961;4959;1113;6979 20710 20724 30709;30710 30709 -0.030042626590443433 NEQVVFSH 8 Unmodified _NEQVVFSH_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2450256347656 2 480.232699 958.450845 -0.14025 -6.735E-05 0.16002 7.6847E-05 0.019775 9.4965E-06 480.23270534431384 46.488 0.76554 43.621 43.266 44.032 -2.8665 52 21 3 0 0 0 0.07389 3 8482 8463;8479;8482 99.799 48.169 1 8538200 31109 4961;4959;1113;6979 20710 20724 30711;30712;30713 30713 -0.030042626590443433 NEQVVVKPD 9 Unmodified _NEQVVVKPD_ 0 0 0 REV__ENSG00000179630|ENST00000325686|LACC1 REV__ENSG00000179630|ENST00000325686|LACC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.99725341796875 3 343.185468 1026.53457 -0.63517 -0.00021798 0.73213 0.00025126 0.096962 3.3276E-05 343.1856802352654 35.761 0.46439 33.367 33.164 33.628 -2.3938 18 12 2 0 0 0 0.87609 1 6574 6574 2.2828 0 1 969890 + 31110 18664 20711 20725 30714 30714 0.022368487180074226 NEQVVVKPD 9 Unmodified _NEQVVVKPD_ 0 0 0 REV__ENSG00000179630|ENST00000325686|LACC1 REV__ENSG00000179630|ENST00000325686|LACC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 343.185468 1026.53457 -0.35233 -0.00012091 0.60647 0.00020813 0.25414 8.7217E-05 343.18562949680415 33.614 0.52305 33.614 33.341 33.864 0 0.12357 0.00024241 NaN 2.2828 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 582330 + 31111 18664 20711 20725 0.022368487180074226 NEQVVVKPD 9 Unmodified _NEQVVVKPD_ 0 0 0 REV__ENSG00000179630|ENST00000325686|LACC1 REV__ENSG00000179630|ENST00000325686|LACC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 343.185468 1026.53457 0.14874 5.1046E-05 -0.064036 -2.1976E-05 0.084707 2.907E-05 343.18539764520034 35.753 0.48019 33.501 33.266 33.746 -2.2527 0.010617 -0.00044791 NaN 2.2828 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1361900 + 31112 18664 20711 20725 0.022368487180074226 NEQVVVKPD 9 Unmodified _NEQVVVKPD_ 0 0 0 REV__ENSG00000179630|ENST00000325686|LACC1 REV__ENSG00000179630|ENST00000325686|LACC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 343.185468 1026.53457 -0.3821 -0.00013113 0.23455 8.0492E-05 -0.14756 -5.064E-05 343.18556721458776 35.756 0.45944 33.479 33.246 33.705 -2.2766 -0.010998 -0.0001405 NaN 2.2828 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 790380 + 31113 18664 20711 20725 0.022368487180074226 NEQVYNELSQR 11 Unmodified _NEQVYNELSQR_ 0 0 0 tr|U7T8G8|U7T8G8_FUSNUAdhesionproteinFadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00050PE=4SV=1 tr|U7T8G8|U7T8G8_FUSNUAdhesionproteinFadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00050PE=4SV=1 tr|U7T8G8|U7T8G8_FUSNUAdhesionproteinFadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00050PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2362365722656 3 460.556512 1378.64771 -0.079008 -3.6388E-05 0.45416 0.00020917 0.37515 0.00017278 460.5565364845455 18.747 0.34113 17.436 17.317 17.658 -1.3109 19 9 3 0 0 0 0.9614 1 3081 3081 5.8681 3.0249 1 1048800 31114 26506 20712 20726 30715 30715 -0.02647127626778456 NERFFGDSA 9 Unmodified _NERFFGDSA_ 0 0 0 ENST00000533381.5_1_11:118925895-118927580:-|nuORF;ENST00000543287.5_1_11:118919950-118926831:-|nuORF;HYOU1|p.K651Rfs*46|1|0.13|ENSG00000149428|chr11:119049058-119049058|T/-|frameshift_variant;ENSG00000149428|ENST00000617285|HYOU1 ENST00000533381.5_1_11:118925895-118927580:-|nuORF ENST00000533381.5_1_11:118925895-118927580:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2594604492188 2 521.733063 1041.45157 -0.11413 -5.9545E-05 0.6918 0.00036094 0.57767 0.00030139 521.7333445069065 64.183 0.59158 64.183 63.888 64.48 0 49 16 4 0 0 0 0.10162 1 12398 12398 55.235 26.153 1 36936000 31115 4791 20713 20727 30716 30716 -0.06749468010002602 NERFFGDSA 9 Unmodified _NERFFGDSA_ 0 0 0 ENST00000533381.5_1_11:118925895-118927580:-|nuORF;ENST00000543287.5_1_11:118919950-118926831:-|nuORF;HYOU1|p.K651Rfs*46|1|0.13|ENSG00000149428|chr11:119049058-119049058|T/-|frameshift_variant;ENSG00000149428|ENST00000617285|HYOU1 ENST00000533381.5_1_11:118925895-118927580:-|nuORF ENST00000533381.5_1_11:118925895-118927580:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.266357421875 2 521.733063 1041.45157 -0.2673 -0.00013946 0.44272 0.00023098 0.17542 9.1523E-05 521.7331832692333 67.409 0.76264 64.3 63.968 64.73 -3.1086 52 21 4 0 0 0 0.0024928 2 13052 13048;13052 117.76 49.68 1 12986000 31116 4791 20713 20727 30717;30718 30718 -0.06749468010002602 NERFFGDSA 9 Unmodified _NERFFGDSA_ 0 0 0 ENST00000533381.5_1_11:118925895-118927580:-|nuORF;ENST00000543287.5_1_11:118919950-118926831:-|nuORF;HYOU1|p.K651Rfs*46|1|0.13|ENSG00000149428|chr11:119049058-119049058|T/-|frameshift_variant;ENSG00000149428|ENST00000617285|HYOU1 ENST00000533381.5_1_11:118925895-118927580:-|nuORF ENST00000533381.5_1_11:118925895-118927580:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2813110351562 2 521.733063 1041.45157 -0.41177 -0.00021483 0.78492 0.00040952 0.37315 0.00019469 521.7333281066814 67.754 0.53094 64.258 63.959 64.49 -3.4965 42 14 4 0 0 0 0.0048521 3 12691 12678;12691;12737 114.19 64.253 1 9074800 31117 4791 20713 20727 30719;30720;30721 30720 -0.06749468010002602 NERFFGDSA 9 Unmodified _NERFFGDSA_ 0 0 0 ENST00000533381.5_1_11:118925895-118927580:-|nuORF;ENST00000543287.5_1_11:118919950-118926831:-|nuORF;HYOU1|p.K651Rfs*46|1|0.13|ENSG00000149428|chr11:119049058-119049058|T/-|frameshift_variant;ENSG00000149428|ENST00000617285|HYOU1 ENST00000533381.5_1_11:118925895-118927580:-|nuORF ENST00000533381.5_1_11:118925895-118927580:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2630004882812 2 521.733063 1041.45157 0.37411 0.00019519 -0.11649 -6.0774E-05 0.25762 0.00013441 521.7329642302361 67.522 0.76155 64.195 63.935 64.697 -3.3268 49 21 3 0 0 0 0.095704 2 12701 12699;12701 57.249 21.044 1 11651000 31118 4791 20713 20727 30722;30723 30723 -0.06749468010002602 NERFGGPP 8 Unmodified _NERFGGPP_ 0 0 0 REV__ENST00000275227.8_2_6:133118191-133118257:-|nuORF REV__ENST00000275227.8_2_6:133118191-133118257:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2159423828125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 85.936 1 81.986 81.486 82.486 -3.9503 0 0 0 0.21486 1 16352 16352 12.532 0.89125 1 + 31119 20291 20714 20728 30724 30724 -0.027245144849416647 NERFGGPP 8 Unmodified _NERFGGPP_ 0 0 0 REV__ENST00000275227.8_2_6:133118191-133118257:-|nuORF REV__ENST00000275227.8_2_6:133118191-133118257:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2155456542969 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 86.256 1 82.306 81.806 82.806 -3.9503 0 0 0 0.2074 1 16417 16417 19.439 1.304 1 + 31120 20291 20714 20728 30725 30725 -0.027245144849416647 NERKRKRWLYW 11 Unmodified _NERKRKRWLYW_ 0 0 0 ENSG00000175354|ENST00000309660|PTPN2 ENSG00000175354|ENST00000309660|PTPN2 ENSG00000175354|ENST00000309660|PTPN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 545.6703491210938 3 545.639064 1633.89536 NaN NaN NaN NaN NaN NaN NaN 173.8 1 173.8 173.3 174.3 0 0 0 0 0.22632 1 35955 35955 0.50596 0 1 31121 6403 20715 20729 30726 30726 0.10377090822362334 NERKVAQL 8 Unmodified _NERKVAQL_ 0 0 0 ENSG00000175197|ENST00000346473|DDIT3;nc|ENSG00000285133|P35638-2|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74273681640625 2 479.277441 956.540328 0.95053 0.00045557 -0.87057 -0.00041724 0.079965 3.8325E-05 479.27696337759465 24.142 0.4947 22.589 22.355 22.85 -1.5532 23 13 3 0 0 0 0.4122 1 4197 4197 31.268 16.02 1 1875800 31122 6392 20716 20730 30727 30727 0.06031992020314192 NERKVAQL 8 Unmodified _NERKVAQL_ 0 0 0 ENSG00000175197|ENST00000346473|DDIT3;nc|ENSG00000285133|P35638-2|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7379150390625 2 479.277441 956.540328 -0.0069784 -3.3446E-06 0.21866 0.0001048 0.21168 0.00010145 479.2773835487122 24.024 0.35118 22.49 22.293 22.644 -1.5342 19 9 3 0 0 0 0.75825 1 3900 3900 27.629 7.1752 1 1733200 31123 6392 20716 20730 30728 30728 0.06031992020314192 NERKVAQL 8 Unmodified _NERKVAQL_ 0 0 0 ENSG00000175197|ENST00000346473|DDIT3;nc|ENSG00000285133|P35638-2|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7379455566406 2 479.277441 956.540328 -0.31075 -0.00014894 0.44909 0.00021524 0.13833 6.6301E-05 479.27753205998636 24.305 0.34658 22.452 22.259 22.606 -1.8534 21 9 3 0 0 0 0.49353 1 3941 3941 31.268 0 1 1185300 31124 6392 20716 20730 30729 30729 0.06031992020314192 NERLTESL 8 Unmodified _NERLTESL_ 0 0 0 nc|ENSG00000105829|O15155-2|BET1;ENSG00000105829|ENST00000222547|BET1 nc|ENSG00000105829|O15155-2|BET1 nc|ENSG00000105829|O15155-2|BET1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2510681152344 2 481.251089 960.487624 -0.25867 -0.00012448 0.69094 0.00033252 0.43227 0.00020803 481.2513701927699 57.753 0.51804 57.753 57.41 57.928 0 23 14 3 0 0 0 0.10766 1 11047 11047 61.602 11.669 1 1295000 31125 2346 20717 20731 30730 30730 0.005799891668516466 NERLTESL 8 Unmodified _NERLTESL_ 0 0 0 nc|ENSG00000105829|O15155-2|BET1;ENSG00000105829|ENST00000222547|BET1 nc|ENSG00000105829|O15155-2|BET1 nc|ENSG00000105829|O15155-2|BET1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25140380859375 2 481.251089 960.487624 0.02893 1.3922E-05 0.76575 0.00036852 0.79468 0.00038244 481.2514135573215 60.355 0.68763 57.422 57.065 57.752 -2.9333 23 19 2 0 0 0 0.34106 1 11622 11622 34.932 3.6637 1 1236900 31126 2346 20717 20731 30731 30731 0.005799891668516466 NERLTESL 8 Unmodified _NERLTESL_ 0 0 0 nc|ENSG00000105829|O15155-2|BET1;ENSG00000105829|ENST00000222547|BET1 nc|ENSG00000105829|O15155-2|BET1 nc|ENSG00000105829|O15155-2|BET1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25177001953125 2 481.251089 960.487624 0.11805 5.6812E-05 0.45385 0.00021841 0.5719 0.00027523 481.25127253712225 60.809 0.55717 57.471 57.165 57.723 -3.3383 25 15 2 0 0 0 0.12741 2 11295 11295;11345 57.722 7.789 1 1283800 31127 2346 20717 20731 30732;30733 30732 0.005799891668516466 NERLTESL 8 Unmodified _NERLTESL_ 0 0 0 nc|ENSG00000105829|O15155-2|BET1;ENSG00000105829|ENST00000222547|BET1 nc|ENSG00000105829|O15155-2|BET1 nc|ENSG00000105829|O15155-2|BET1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2515563964844 2 481.251089 960.487624 0.099727 4.7994E-05 0.5569 0.00026801 0.65663 0.000316 481.2511786195053 60.74 0.59968 57.516 57.134 57.734 -3.2237 24 16 2 0 0 0 0.19881 1 11351 11351 45.74 3.7843 1 2254500 31128 2346 20717 20731 30734 30734 0.005799891668516466 NERQIWLI 8 Unmodified _NERQIWLI_ 0 0 0 REV__MLT1D_dup253|chr1:31570567-31571029:-|1.4791642238045395|0.3630010703550197|2.03|477.0|10|2|sense REV__MLT1D_dup253|chr1:31570567-31571029:-|1.4791642238045395|0.3630010703550197|2.03|477.0|10|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 358.20416259765625 3 357.869703 1070.58728 -0.78014 -0.00027919 0.5059 0.00018105 -0.27424 -9.8144E-05 357.86983150948197 44.721 0.32062 41.974 41.709 42.029 -2.7475 12 8 2 0 0 0 0.81659 1 8074 8074 3.5965 0 1 450870 + 31129 23862 20718 20732 30735 30735 0.05480851571473977 NERQKVKSY 9 Unmodified _NERQKVKSY_ 0 0 0 REV__ENSG00000157881|ENST00000378466|PANK4 REV__ENSG00000157881|ENST00000378466|PANK4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3123168945312 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 139.18 1 134.23 133.73 134.73 -4.952 0 0 0 0.23508 1 26772 26772 10.074 1.9184 1 + 31130 17312 20719 20733 30736 30736 0.04019031249231375 NERQVREL 8 Unmodified _NERQVREL_ 0 0 0 REV__ENSG00000117411|ENST00000372324|B4GALT2 REV__ENSG00000117411|ENST00000372324|B4GALT2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.5011901855469 3 348.524595 1042.55196 NaN NaN NaN NaN NaN NaN NaN 22.927 1 21.373 20.873 21.873 -1.5532 0 0 0 0.22847 1 3937 3937 10.074 3.8681 1 + 31131 15518 20720 20734 30737 30737 0.032381890436681715 NERRGQGG 8 Unmodified _NERRGQGG_ 0 0 0 REV__nc|ENSG00000169218|Q2MKA7-3|RSPO1 REV__nc|ENSG00000169218|Q2MKA7-3|RSPO1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2157897949219 2 437.217914 872.421276 NaN NaN NaN NaN NaN NaN NaN 107.14 1 102.82 102.32 103.32 -4.32 0 0 0 0.21452 1 21097 21097 13.508 2.3934 1 + 31132 18086 20721 20735 30738 30738 -0.020037818845139554 NERSGAQPA 9 Unmodified _NERSGAQPA_ 0 0 0 REV__ENSG00000070366|ENST00000263073|SMG6 REV__ENSG00000070366|ENST00000263073|SMG6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2579345703125 2 465.225405 928.436257 NaN NaN NaN NaN NaN NaN NaN 52.513 1 52.513 52.013 53.013 0 0 0 0 0.23277 1 9982 9982 13.906 3.0821 1 + 31133 14255 20722 20736 30739 30739 -0.03082334807186271 NESCQPSEER 10 Unmodified _NESCQPSEER_ 0 0 0 REV__ENSG00000196233|ENST00000421806|LCOR REV__ENSG00000196233|ENST00000421806|LCOR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2671508789062 2 589.740759 1177.46697 0.77507 0.00045709 -1.4999 -0.00088454 -0.72481 -0.00042745 589.7398246755597 117.24 0.65606 112.66 112.26 112.92 -4.5815 43 18 3 0 0 0 0.68961 1 22527 22527 12.241 0 1 3797100 + 31134 19229 20723 20737 30740 30740 -0.11466969275124939 NESEEVRQF 9 Unmodified _NESEEVRQF_ 0 0 0 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 570.2597045898438 2 569.262185 1136.50982 -0.16736 -9.5273E-05 0.2668 0.00015188 0.099436 5.6605E-05 569.2622904839527 46.931 0.58421 44.09 43.728 44.313 -2.8409 48 16 4 0 0 0 0.12183 1 8815 8815 48.346 29.089 1 36403000 31135 3423 20724 20738 30741 30741 -0.052978311553715685 NESEEVRQF 9 Unmodified _NESEEVRQF_ 0 0 0 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 569.262185 1136.50982 0.54357 0.00030943 -0.35641 -0.00020289 0.18716 0.00010654 569.2619055856638 43.943 0.55205 43.943 43.604 44.156 0 -0.080301 -0.00045669 NaN 48.346 46 15 4 NaN NaN NaN NaN 0 NaN NaN 0 18758000 31136 3423 20724 20738 -0.052978311553715685 NESEEVRQF 9 Unmodified _NESEEVRQF_ 0 0 0 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 569.262185 1136.50982 -0.007364 -4.192E-06 0.076027 4.3279E-05 0.068663 3.9087E-05 569.2621690484015 46.994 0.52038 44.052 43.719 44.24 -2.9421 0.029015 3.5653E-05 NaN 48.346 48 14 4 NaN NaN NaN NaN 0 NaN NaN 0 30674000 31137 3423 20724 20738 -0.052978311553715685 NESEEVRQF 9 Unmodified _NESEEVRQF_ 0 0 0 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 569.262185 1136.50982 -0.080059 -4.5575E-05 0.17368 9.8867E-05 0.093616 5.3292E-05 569.2622904658288 46.957 0.55493 44.007 43.705 44.26 -2.9499 -0.015958 0.00014683 NaN 48.346 46 15 4 NaN NaN NaN NaN 0 NaN NaN 0 19740000 31138 3423 20724 20738 -0.052978311553715685 NESFAYMF 8 Unmodified _NESFAYMF_ 0 0 0 REV__tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1 REV__tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.81463623046875 3 336.809233 1007.40587 0.064789 2.1821E-05 -1.5955 -0.00053739 -1.5307 -0.00051557 336.8085714754717 55.084 0.17634 51.948 51.887 52.063 -3.1352 6 4 2 0 0 0 8448 1 10192 10192 14.838 14.157 1 2677500 + 31139 25163 20725 20739 30742 30742 -0.0975382951659185 NESFGFTA 8 Unmodified _NESFGFTA_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2287902832031 2 436.692875 871.371197 0.55307 0.00024152 0.96576 0.00042174 1.5188 0.00066326 436.6936790001108 102.67 0.96886 102.67 102.24 103.2 0 76 27 4 0 0 0 8448 1 20130 20130 51.264 41.72 1 7077000 31140 5830 20726 20740 30743 30743 -0.06963329333041202 NESFGFTA 8 Unmodified _NESFGFTA_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2157897949219 2 436.692875 871.371197 -0.55932 -0.00024425 1.2535 0.00054739 0.69417 0.00030314 436.69356936498457 107.26 0.79559 102.94 102.54 103.34 -4.32 71 22 4 0 0 0 0.27601 1 21097 21097 54.774 8.7526 1 8081400 31141 5830 20726 20740 30744 30744 -0.06963329333041202 NESFGFTA 8 Unmodified _NESFGFTA_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22833251953125 2 436.692875 871.371197 -0.074451 -3.2512E-05 0.49301 0.00021529 0.41856 0.00018278 436.6941030243072 107.33 0.96598 102.92 102.44 103.4 -4.4121 119 27 6 0 0 0 8448 1 20564 20564 87.878 64.156 1 10318000 31142 5830 20726 20740 30745 30745 -0.06963329333041202 NESFGFTA 8 Unmodified _NESFGFTA_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21649169921875 2 436.692875 871.371197 0.53157 0.00023213 1.3594 0.00059364 1.891 0.00082578 436.6939030710148 106.99 0.964 102.86 102.46 103.42 -4.135 92 27 4 0 0 0 0.089098 3 20571 20516;20571;20574 65.235 55.894 1 9554400 31143 5830 20726 20740 30746;30747;30748 30747 -0.06963329333041202 NESFGYDVY 9 Unmodified _NESFGYDVY_ 0 0 0 REV__TDRD7|p.N797Sfs*58|1|0.03|ENSG00000196116|chr9:97480915-97480916|-/GTAATGTTAAT|frameshift_variant REV__TDRD7|p.N797Sfs*58|1|0.03|ENSG00000196116|chr9:97480915-97480916|-/GTAATGTTAAT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78955078125 2 547.227279 1092.44001 -0.31463 -0.00017218 1.2518 0.00068503 0.93718 0.00051285 547.227996164349 108.33 1.3217 104.01 103.52 104.84 -4.32 97 37 3 0 0 0 0.40602 1 21493 21493 25.399 8.3128 1 10654000 + 31144 19217 20727 20741 30749 30749 -0.10251709824001409 NESGYIFTL 9 Unmodified _NESGYIFTL_ 0 0 0 TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2574462890625 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 129.39 1 124.58 124.08 125.08 -4.817 0 0 0 0.22519 1 24840 24840 16.149 1.3108 1 31145 1519 20728 20742 30750 30750 -0.022422425476179342 NESKAWEV 8 Unmodified _NESKAWEV_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7662658691406 2 481.732532 961.45051 0.10812 5.2083E-05 2.7657 0.0013324 2.8739 0.0013844 481.7330270749745 62.272 0.39223 59.311 59.179 59.571 -2.9614 13 10 2 0 0 0 0.94768 1 12043 12043 18.146 7.3224 1 820410 31146 3214 20729 20743 30751 30751 -0.031756823789010014 NESLARPPP 9 Unmodified _NESLARPPP_ 0 0 0 REV__PHLPP1|p.G1501R|1|0.41|ENSG00000081913|chr18:62978778-62978778|G/A|missense_variant REV__PHLPP1|p.G1501R|1|0.41|ENSG00000081913|chr18:62978778-62978778|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26416015625 2 490.761623 979.508694 -0.30831 -0.0001513 0.34559 0.0001696 0.037281 1.8296E-05 490.7617435959805 50.009 0.43708 47.002 46.705 47.142 -3.0068 20 12 2 0 0 0 0.32263 1 9129 9129 46.021 0 1 797580 + 31147 24465 20730 20744 30752 30752 0.01811999266374187 NESLFGKKY 9 Unmodified _NESLFGKKY_ 0 0 0 nc|ENSG00000115641|Q14192-2|FHL2;ENSG00000115641|ENST00000530340|FHL2 nc|ENSG00000115641|Q14192-2|FHL2 nc|ENSG00000115641|Q14192-2|FHL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.793212890625 2 543.284931 1084.55531 0.032076 1.7426E-05 0.50149 0.00027245 0.53357 0.00028988 543.2852357211113 59.672 0.42543 59.672 59.396 59.821 0 20 11 2 0 0 0 0.10083 2 11392 11392;11441 55.503 24.866 1 1828100 31148 2873 20731 20745 30753;30754 30753 0.016414390976706272 NESLFGKKY 9 Unmodified _NESLFGKKY_ 0 0 0 nc|ENSG00000115641|Q14192-2|FHL2;ENSG00000115641|ENST00000530340|FHL2 nc|ENSG00000115641|Q14192-2|FHL2 nc|ENSG00000115641|Q14192-2|FHL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7864379882812 2 543.284931 1084.55531 0.29404 0.00015975 0.18195 9.885E-05 0.47599 0.0002586 543.2850683523782 62.467 0.46004 59.506 59.214 59.674 -2.9614 25 12 3 0 0 0 0.094316 2 12067 12017;12067 57.722 17.772 1 2104500 31149 2873 20731 20745 30755;30756 30756 0.016414390976706272 NESLFGKKY 9 Unmodified _NESLFGKKY_ 0 0 0 nc|ENSG00000115641|Q14192-2|FHL2;ENSG00000115641|ENST00000530340|FHL2 nc|ENSG00000115641|Q14192-2|FHL2 nc|ENSG00000115641|Q14192-2|FHL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7861328125 2 543.284931 1084.55531 0.31644 0.00017192 0.084537 4.5928E-05 0.40098 0.00021784 543.2849416954433 62.725 0.45472 59.485 59.207 59.661 -3.2395 21 12 2 0 0 0 0.039785 1 11741 11741 75.761 31.988 1 1377900 31150 2873 20731 20745 30757 30757 0.016414390976706272 NESLVVEE 8 Unmodified _NESLVVEE_ 0 0 0 REV__ENSG00000031691|ENST00000335783|CENPQ REV__ENSG00000031691|ENST00000335783|CENPQ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 459.7250671386719 2 459.724372 917.434192 0.059191 2.7211E-05 0.17584 8.0838E-05 0.23503 0.00010805 459.7243928479096 61.572 0.98623 58.203 57.795 58.781 -3.3694 45 27 3 0 0 0 8448 1 11563 11563 4.2837 0 1 4702000 + 31151 14015 20732 20746 30758 30758 -0.027828083356666866 NESLVVEE 8 Unmodified _NESLVVEE_ 0 0 0 REV__ENSG00000031691|ENST00000335783|CENPQ REV__ENSG00000031691|ENST00000335783|CENPQ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2297058105469 2 459.724372 917.434192 0.24747 0.00011377 0.080823 3.7156E-05 0.32829 0.00015092 459.7243142078271 72.1 0.81372 68.472 68.024 68.838 -3.6275 40 22 2 0 0 0 0.72428 1 13522 13522 10.824 0 1 1655800 + 31152 14015 20732 20746 30759 30759 -0.027828083356666866 NESPLWFS 8 Unmodified _NESPLWFS_ 0 0 0 REV__ENSG00000145982|ENST00000274680|FARS2 REV__ENSG00000145982|ENST00000274680|FARS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25732421875 2 490.229625 978.444697 NaN NaN NaN NaN NaN NaN NaN 49.091 1 46.084 45.584 46.584 -3.0068 0 0 0 0.18898 1 8997 8997 28.487 1.6032 1 + 31153 16864 20733 20747 30760 30760 -0.0453878089057298 NESRAYGY 8 Unmodified _NESRAYGY_ 0 0 0 REV__ENST00000227266.9_1_11:88029317-88029428:-|nuORF REV__ENST00000227266.9_1_11:88029317-88029428:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23675537109375 2 480.214506 958.414459 0.23993 0.00011522 -0.10137 -4.8679E-05 0.13856 6.6537E-05 480.21443800080544 44.059 0.4418 44.059 43.78 44.222 0 30 12 3 0 0 0 0.69887 2 8217 8217;8221 14.582 2.0501 1 5180100 + 31154 20050 20734 20748 30761;30762 30761 -0.0664113955576795 NESSLHKY 8 Unmodified _NESSLHKY_ 0 0 0 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2750549316406 2 489.237981 976.461409 -0.32614 -0.00015956 0.20588 0.00010073 -0.12026 -5.8835E-05 489.2378853118124 49.351 0.60053 46.344 45.963 46.564 -3.0068 36 16 3 0 0 0 0.58432 1 9055 9055 23.148 5.0134 1 1415600 + 31155 17848 20735 20749 30763 30763 -0.027762800046275515 NESSLHKY 8 Unmodified _NESSLHKY_ 0 0 0 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.237981 976.461409 0.52192 0.00025534 -0.67246 -0.00032899 -0.15054 -7.365E-05 489.237620043889 46.286 0.62625 46.286 45.898 46.525 0 -0.041649 -0.00046276 NaN 23.148 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1620400 + 31156 17848 20735 20749 -0.027762800046275515 NESSLHKY 8 Unmodified _NESSLHKY_ 0 0 0 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.237981 976.461409 0.017126 8.3788E-06 -0.10384 -5.0801E-05 -0.08671 -4.2422E-05 489.2376989108792 49.247 0.4925 46.366 46.029 46.522 -2.8811 0.038367 9.3615E-05 NaN 23.148 33 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1751900 + 31157 17848 20735 20749 -0.027762800046275515 NESSLHKY 8 Unmodified _NESSLHKY_ 0 0 0 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.237981 976.461409 0.14363 7.0269E-05 -0.16158 -7.9053E-05 -0.017954 -8.7837E-06 489.23777432278115 49.313 0.51386 46.314 45.999 46.513 -2.999 -0.013367 3.7111E-05 NaN 23.148 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1844500 + 31158 17848 20735 20749 -0.027762800046275515 NESSLHKY 8 Unmodified _NESSLHKY_ 0 0 0 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.237981 976.461409 -0.32614 -0.00015956 0.20588 0.00010073 -0.12026 -5.8835E-05 489.2378853118124 49.351 0.60053 46.344 45.963 46.564 -3.0068 0.016649 0.00039667 NaN 23.148 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1415600 + 31159 17848 20735 20749 -0.027762800046275515 NESSLQGII 9 Unmodified _NESSLQGII_ 0 0 0 ENST00000527755.5_1_11:119003111-119005205:+|nuORF;HINFP|p.P492Qfs*17|1|0.37|ENSG00000172273|chr11:119134415-119134415|C/-|frameshift_variant;ENSG00000172273|ENST00000350777|HINFP ENST00000527755.5_1_11:119003111-119005205:+|nuORF ENST00000527755.5_1_11:119003111-119005205:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7702331542969 2 480.753464 959.492375 -0.12042 -5.7895E-05 0.1536 7.3845E-05 0.033177 1.595E-05 480.7534521981586 50.706 0.55665 47.654 47.331 47.888 -3.0517 41 15 3 0 0 0 0.28819 1 9303 9303 32.305 0 1 3165200 31160 6205 20736 20750 30764 30764 0.011008733096218748 NESSSKKRE 9 Unmodified _NESSSKKRE_ 0 0 0 ENSG00000179083|ENST00000683942|FAM133A ENSG00000179083|ENST00000683942|FAM133A ENSG00000179083|ENST00000683942|FAM133A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2738037109375 2 532.770177 1063.5258 0.08626 4.5957E-05 -0.79186 -0.00042188 -0.7056 -0.00037592 532.7696847299757 96.746 1.661 96.746 96.149 97.81 0 113 47 4 0 0 0 0.16539 1 19080 19080 41.956 2.0059 1 19232000 31161 6608 20737 20751 30765 30765 -0.003421249184611952 NESSSKKRE 9 Unmodified _NESSSKKRE_ 0 0 0 ENSG00000179083|ENST00000683942|FAM133A ENSG00000179083|ENST00000683942|FAM133A ENSG00000179083|ENST00000683942|FAM133A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2737426757812 2 532.770177 1063.5258 0.090831 4.8392E-05 -1.0292 -0.00054834 -0.9384 -0.00049995 532.76989652839 101.07 1.6981 96.91 95.975 97.673 -4.1594 122 48 4 0 0 0 0.09885 1 19934 19934 56.177 4.5472 1 20176000 31162 6608 20737 20751 30766 30766 -0.003421249184611952 NESTISFY 8 Unmodified _NESTISFY_ 0 0 0 nc|ENSG00000142733|O95382-2|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6 nc|ENSG00000142733|O95382-2|MAP3K6 nc|ENSG00000142733|O95382-2|MAP3K6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25335693359375 2 480.71909 959.423627 -0.20543 -9.8754E-05 0.128 6.1533E-05 -0.077429 -3.7221E-05 480.719205822235 112.02 0.52643 107.59 107.41 107.94 -4.4231 20 14 2 0 0 0 0.98792 1 22132 22132 5.2307 0.47466 1 1484100 31163 4440 20738 20752 30767 30767 -0.057707909900841514 NESTISFY 8 Unmodified _NESTISFY_ 0 0 0 nc|ENSG00000142733|O95382-2|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6 nc|ENSG00000142733|O95382-2|MAP3K6 nc|ENSG00000142733|O95382-2|MAP3K6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2459411621094 2 480.71909 959.423627 -0.016847 -8.0986E-06 0.00091392 4.3934E-07 -0.015933 -7.6593E-06 480.7189843069535 112.15 0.66132 107.62 107.24 107.9 -4.5259 27 18 2 0 0 0 0.93477 1 21536 21536 18.135 10.225 1 901160 31164 4440 20738 20752 30768 30768 -0.057707909900841514 NESTTFVL 8 Unmodified _NESTTFVL_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 910.40234375 1 910.451639 909.444362 0.52 0.00047344 0.31043 0.00028264 0.83044 0.00075607 910.451638580275 122.7 0.73097 122.7 122.4 123.13 0 31 20 2 0 0 0 0.036764 4 24177 24131;24133;24175;24177 96.285 38.813 1 3655800 31165 2071 20739 20753 30769;30770;30771;30772 30772 -0.013982006104129141 NESTTFVL 8 Unmodified _NESTTFVL_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.4057006835938 1 910.451639 909.444362 0.30547 0.00027812 0.18269 0.00016633 0.48817 0.00044445 910.4516396867594 127.33 0.74268 122.63 122.29 123.03 -4.6998 30 20 2 0 0 0 0.079177 2 24547 24544;24547 81.613 24.142 1 4349300 31166 2071 20739 20753 30773;30774 30774 -0.013982006104129141 NESTTFVL 8 Unmodified _NESTTFVL_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 910.451639 909.444362 0.28225 0.00025698 0.18044 0.00016428 0.46269 0.00042125 910.451731436305 127.24 0.724 122.63 122.27 122.99 -4.6172 -0.045566 -6.4872E-06 NaN 96.285 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 5495300 31167 2071 20739 20753 -0.013982006104129141 NESTTFVL 8 Unmodified _NESTTFVL_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 910.451639 909.444362 0.43686 0.00039774 0.11132 0.00010135 0.54818 0.0004991 910.4517008900547 127.52 0.71558 122.73 122.3 123.02 -4.7958 0.056595 -6.9414E-05 NaN 96.285 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3430800 31168 2071 20739 20753 -0.013982006104129141 NESVSAPRSF 10 Unmodified _NESVSAPRSF_ 0 0 0 REV__nc|ENSG00000088367|Q9H4G0-4|EPB41L1 REV__nc|ENSG00000088367|Q9H4G0-4|EPB41L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.769775390625 2 547.26727 1092.51999 0.13261 7.2573E-05 0.65281 0.00035726 0.78542 0.00042983 547.2677413858563 44.022 1.0089 41.231 40.736 41.745 -2.79 65 28 4 0 0 0 0.71778 1 8345 8345 9.3831 2.0939 1 5114600 + 31169 14513 20740 20754 30775 30775 -0.022572234301378558 NETAEPWGY 9 Unmodified _NETAEPWGY_ 0 0 0 REV__MME|p.V169E|1|0.34|ENSG00000196549|chr3:155116730-155116730|T/A|missense_variant REV__MME|p.V169E|1|0.34|ENSG00000196549|chr3:155116730-155116730|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2621459960938 2 533.727446 1065.44034 NaN NaN NaN NaN NaN NaN NaN 66.445 1 63.398 62.898 63.898 -3.047 0 0 0 0.23508 1 12875 12875 10.824 0.64053 1 + 31170 23864 20741 20755 30776 30776 -0.08976290104146756 NETDILSQY 9 Unmodified _NETDILSQY_ 0 0 0 ENST00000532239.1_1_11:62365783-62365918:-|nuORF;ENST00000526844.1_1_11:62365783-62368922:-|nuORF;MTA2|p.Y129Tfs*33|1|0.37|ENSG00000149480|chr11:62598129-62598129|A/-|frameshift_variant;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant;ENSG00000149480|ENST00000278823|MTA2 ENST00000532239.1_1_11:62365783-62365918:-|nuORF ENST00000532239.1_1_11:62365783-62365918:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2652587890625 2 541.753661 1081.49277 -0.012826 -6.9487E-06 0.15997 8.6665E-05 0.14715 7.9717E-05 541.7537355480641 112.18 0.76396 107.76 107.34 108.1 -4.4231 52 21 3 0 0 0 0.0019732 1 22088 22088 128.93 53.172 1 11285000 31171 4793 20742 20756 30777 30777 -0.04471751761161613 NETDILSQY 9 Unmodified _NETDILSQY_ 0 0 0 ENST00000532239.1_1_11:62365783-62365918:-|nuORF;ENST00000526844.1_1_11:62365783-62368922:-|nuORF;MTA2|p.Y129Tfs*33|1|0.37|ENSG00000149480|chr11:62598129-62598129|A/-|frameshift_variant;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant;ENSG00000149480|ENST00000278823|MTA2 ENST00000532239.1_1_11:62365783-62365918:-|nuORF ENST00000532239.1_1_11:62365783-62365918:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2623291015625 2 541.753661 1081.49277 0.68154 0.00036922 -0.53463 -0.00028964 0.14691 7.9586E-05 541.7533490027249 111.98 0.87315 107.75 107.25 108.12 -4.2289 53 24 3 0 0 0 7.4665E-06 1 21541 21541 137.42 61.663 1 8939300 31172 4793 20742 20756 30778 30778 -0.04471751761161613 NETDILSQY 9 Unmodified _NETDILSQY_ 0 0 0 ENST00000532239.1_1_11:62365783-62365918:-|nuORF;ENST00000526844.1_1_11:62365783-62368922:-|nuORF;MTA2|p.Y129Tfs*33|1|0.37|ENSG00000149480|chr11:62598129-62598129|A/-|frameshift_variant;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant;ENSG00000149480|ENST00000278823|MTA2 ENST00000532239.1_1_11:62365783-62365918:-|nuORF ENST00000532239.1_1_11:62365783-62365918:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 541.753661 1081.49277 0.023453 1.2706E-05 0.27198 0.00014734 0.29543 0.00016005 541.7537488027151 112.28 0.80224 107.76 107.31 108.11 -4.5259 0.0020933 0.00035065 NaN 137.42 40 22 2 NaN NaN NaN NaN 0 NaN NaN 0 10077000 31173 4793 20742 20756 -0.04471751761161613 NETESVLSY 9 Unmodified _NETESVLSY_ 0 0 0 MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant;MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3 MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2623291015625 2 521.240386 1040.46622 0.15065 7.8526E-05 -0.078539 -4.0938E-05 0.072113 3.7588E-05 521.2402068240417 92.162 0.71782 88.354 88.035 88.752 -3.8083 44 20 3 0 0 0 0.57447 1 17684 17684 14.838 5.4908 1 3260000 31174 1288 20743 20757 30779 30779 -0.052394406524854276 NETESVLSY 9 Unmodified _NETESVLSY_ 0 0 0 MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant;MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3 MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.240386 1040.46622 0.10688 5.5708E-05 -0.43899 -0.00022882 -0.33212 -0.00017311 521.2400402645882 88.252 0.51518 88.252 87.952 88.467 0 -0.091022 -0.00044648 NaN 14.838 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2243400 31175 1288 20743 20757 -0.052394406524854276 NETESVLSY 9 Unmodified _NETESVLSY_ 0 0 0 MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant;MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3 MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.240386 1040.46622 -0.25639 -0.00013364 0.052986 2.7619E-05 -0.2034 -0.00010602 521.2403095736918 92.281 0.79698 88.356 87.891 88.688 -3.9251 0.013334 6.6401E-05 NaN 14.838 31 22 2 NaN NaN NaN NaN 0 NaN NaN 0 4273700 31176 1288 20743 20757 -0.052394406524854276 NETESVLSY 9 Unmodified _NETESVLSY_ 0 0 0 MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant;MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3 MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.240386 1040.46622 -0.446 -0.00023247 0.62914 0.00032793 0.18314 9.546E-05 521.2405476845089 92.504 0.69386 88.409 88.014 88.708 -4.0946 0.066406 0.00066703 NaN 14.838 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2819400 31177 1288 20743 20757 -0.052394406524854276 NETIADLYF 9 Unmodified _NETIADLYF_ 0 0 0 tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1 tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1 tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7897338867188 2 543.261122 1084.50769 0.048321 2.6251E-05 0.41055 0.00022303 0.45887 0.00024928 543.2611903860741 130.78 0.97498 125.94 125.47 126.44 -4.8355 78 27 4 0 0 0 0.39189 1 25047 25047 26.268 0 1 13266000 31178 26206 20744 20758 30780 30780 -0.03118259893199138 NETIRIETCFF 11 Unmodified _NETIRIETCFF_ 0 0 0 REV__ENST00000499217.6_1_15:74754198-74754285:+|nuORF REV__ENST00000499217.6_1_15:74754198-74754285:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2246398925781 3 458.223705 1371.64929 NaN NaN NaN NaN NaN NaN NaN 79.41 1 75.605 75.105 76.105 -3.8048 0 0 0 0.22632 1 15066 15066 0.03141 0.025454 1 + 31179 22423 20745 20759 30781 30781 -0.021672098623639613 NETIRIETCFF 11 Unmodified _NETIRIETCFF_ 0 0 0 REV__ENST00000499217.6_1_15:74754198-74754285:+|nuORF REV__ENST00000499217.6_1_15:74754198-74754285:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2240295410156 3 458.223705 1371.64929 NaN NaN NaN NaN NaN NaN NaN 79.329 1 75.653 75.153 76.153 -3.676 0 0 0 0.22632 1 15113 15113 0.03141 0.025454 1 + 31180 22423 20745 20759 30782 30782 -0.021672098623639613 NETLCVPGP 9 Unmodified _NETLCVPGP_ 0 0 0 REV__ENSG00000213512|ENST00000294671|GBP7 REV__ENSG00000213512|ENST00000294671|GBP7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2506103515625 2 465.223485 928.432418 NaN NaN NaN NaN NaN NaN NaN 42.917 1 42.917 42.417 43.417 0 0 0 0 0.19684 1 8033 8033 2.6312 0.25162 1 + 31181 19642 20746 20760 30783 30783 -0.034661406252553206 NETLTLKLY 9 Unmodified _NETLTLKLY_ 0 0 0 nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR;nc|ENSG00000165409|P16473-2|TSHR;nc|ENSG00000165409|P16473-3|TSHR nc|ENSG00000165409|P16473|TSHR nc|ENSG00000165409|P16473|TSHR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7774658203125 2 547.808239 1093.60193 NaN NaN NaN NaN NaN NaN NaN 77.384 1 73.618 73.118 74.118 -3.7664 0 0 0 0.23508 1 14661 14661 12.532 2.4576 1 31182 5625 20747 20761 30784 30784 0.058868789289590495 NETNNCDEKL 10 Unmodified _NETNNCDEKL_ 0 0 0 REV__ENSG00000130147|ENST00000392011|SH3BP4 REV__ENSG00000130147|ENST00000392011|SH3BP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2615356445312 2 590.25096 1178.48737 NaN NaN NaN NaN NaN NaN NaN 126.41 1 121.61 121.11 122.11 -4.7958 0 0 0 0.22583 1 24263 24263 13.906 0 1 + 31183 15986 20748 20762 30785 30785 -0.09473798615317719 NETQINVL 8 Unmodified _NETQINVL_ 0 0 0 REV__ENSG00000188000|ENST00000641288|OR7D2 REV__ENSG00000188000|ENST00000641288|OR7D2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25701904296875 2 465.748182 929.481811 -0.10058 -4.6844E-05 0.19608 9.1326E-05 0.095506 4.4482E-05 465.7481126169925 67.615 0.86312 64.506 63.968 64.831 -3.1086 54 24 3 0 0 0 0.96284 1 13151 13151 13.508 0 1 3234200 + 31184 19124 20749 20763 30786 30786 0.014248906552097651 NETSQKIAA 9 Unmodified _NETSQKIAA_ 0 0 0 ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3;nc|ENSG00000130363|Q86UC2-2|RSPH3 ENSG00000130363|ENST00000367069|RSPH3 ENSG00000130363|ENST00000367069|RSPH3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2509765625 2 481.251089 960.487624 0.27378 0.00013176 0.027002 1.2995E-05 0.30078 0.00014475 481.2510220287192 20.102 0.24393 18.706 18.585 18.829 -1.3966 11 6 2 0 0 0 0.11282 3 3342 3340;3342;3343 51.415 28.679 1 638930 31185 3605 20750 20764 30787;30788;30789 30788 0.005799891668516466 NETSQKIAA 9 Unmodified _NETSQKIAA_ 0 0 0 ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3;nc|ENSG00000130363|Q86UC2-2|RSPH3 ENSG00000130363|ENST00000367069|RSPH3 ENSG00000130363|ENST00000367069|RSPH3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25213623046875 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 19.985 1 18.66 18.16 19.16 -1.3251 0 0 0 0.21844 1 3079 3079 18.146 5.6148 1 31186 3605 20750 20764 30790 30790 0.005799891668516466 NETSVIHY 8 Unmodified _NETSVIHY_ 0 0 0 PEG3|p.S954Y|1|0.41|ENSG00000198300|chr19:56815581-56815581|G/T|missense_variant PEG3|p.S954Y|1|0.41|ENSG00000198300|chr19:56815581-56815581|G/T|missense_variant PEG3|p.S954Y|1|0.41|ENSG00000198300|chr19:56815581-56815581|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2529602050781 2 481.732532 961.45051 0.40445 0.00019484 0.8724 0.00042026 1.2768 0.0006151 481.7324837819688 69.784 0.72622 66.204 65.791 66.517 -3.5798 39 20 2 0 0 0 0.64118 1 13194 13194 30.637 17.594 1 2350200 31187 12775 20751 20765 30791 30791 -0.031756823789010014 NETVLTVW 8 Unmodified _NETVLTVW_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25469970703125 2 481.2531 960.491647 -0.40587 -0.00019532 1.1188 0.00053844 0.71296 0.00034312 481.2535774783836 109.43 0.70076 105.05 104.61 105.31 -4.3776 28 19 2 0 0 0 0.62642 1 21486 21486 20.454 3.5113 1 1467500 31188 4814 20752 20766 30792 30792 0.009820786605587273 NETVLTVW 8 Unmodified _NETVLTVW_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2508544921875 2 481.2531 960.491647 0.59517 0.00028643 -0.17498 -8.4212E-05 0.42019 0.00020222 481.252948308135 109.18 0.70125 105 104.7 105.4 -4.1826 30 19 2 0 0 0 0.5707 1 20976 20976 24.021 2.2739 1 1173300 31189 4814 20752 20766 30793 30793 0.009820786605587273 NETVMPSAL 9 Unmodified _NETVMPSAL_ 0 0 0 ZC3H7A|p.I490Yfs*41|2|0.18|ENSG00000122299|chr16:11767471-11767471|T/-|frameshift_variant;ENSG00000122299|ENST00000355758|ZC3H7A ZC3H7A|p.I490Yfs*41|2|0.18|ENSG00000122299|chr16:11767471-11767471|T/-|frameshift_variant ZC3H7A|p.I490Yfs*41|2|0.18|ENSG00000122299|chr16:11767471-11767471|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2364807128906 2 481.236593 960.458632 0.3023 0.00014548 0.57028 0.00027444 0.87257 0.00041991 481.23696498050055 104.47 0.68994 104.47 104.17 104.86 0 30 19 2 0 0 0 0.016216 3 20516 20516;20534;20562 96.111 52.253 1 2758000 31190 3217 20753 20767 30794;30795;30796 30794 -0.02317871453783482 NEVAIPPNAY 10 Unmodified _NEVAIPPNAY_ 0 0 0 ENSG00000135148|ENST00000412615|TRAFD1;ENST00000550051.5_1_12:112563419-112579054:+|nuORF ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7806396484375 2 544.274564 1086.53457 0.047941 2.6093E-05 -0.61343 -0.00033387 -0.56549 -0.00030778 544.2739942196296 130.24 0.17061 125.4 125.3 125.47 -4.8355 5 4 2 0 0 0 0.83242 1 25016 25016 20.454 3.3407 1 408200 31191 3905 20754 20768 30797 30797 -0.005231512820046191 NEVDFQEY 8 Unmodified _NEVDFQEY_ 0 0 0 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26123046875 2 522.219454 1042.42436 0.1591 8.3087E-05 0.010717 5.5965E-06 0.16982 8.8683E-05 522.2193749914916 86.229 0.91509 86.229 85.788 86.703 0 60 25 3 0 0 0 0.032794 2 16820 16766;16820 128.37 53.943 1 12191000 31192 7236 20755 20769 30798;30799 30799 -0.0951599634104241 NEVDFQEY 8 Unmodified _NEVDFQEY_ 0 0 0 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2574462890625 2 522.219454 1042.42436 -0.28036 -0.00014641 0.33073 0.00017271 0.050366 2.6302E-05 522.2195746384067 90.487 0.93793 86.628 86.191 87.129 -3.8595 65 26 3 0 0 0 0.032794 1 17702 17702 128.37 53.943 1 24295000 31193 7236 20755 20769 30800 30800 -0.0951599634104241 NEVDFQEY 8 Unmodified _NEVDFQEY_ 0 0 0 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2613525390625 2 522.219454 1042.42436 -0.36497 -0.00019059 0.42224 0.0002205 0.05727 2.9908E-05 522.2196395909926 90.586 0.90194 86.542 86.2 87.102 -4.0443 64 25 3 0 0 0 0.39104 3 17212 17212;17215;17342 64.86 62.229 1 21990000 31194 7236 20755 20769 30801;30802;30803 30801 -0.0951599634104241 NEVDFQEY 8 Unmodified _NEVDFQEY_ 0 0 0 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2586669921875 2 522.219454 1042.42436 0.2148 0.00011218 -0.12227 -6.3851E-05 0.092536 4.8324E-05 522.2193537927963 90.345 1.0489 86.567 86.078 87.127 -3.7779 74 29 3 0 0 0 0.61952 1 17222 17222 26.268 10.421 1 19568000 31195 7236 20755 20769 30804 30804 -0.0951599634104241 NEVDIGGNIY 10 Unmodified _NEVDIGGNIY_ 0 0 0 ENST00000555520.1_1_15:93431416-93440966:+|nuORF ENST00000555520.1_1_15:93431416-93440966:+|nuORF ENST00000555520.1_1_15:93431416-93440966:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7738647460938 2 547.261653 1092.50875 0.66642 0.0003647 -0.36914 -0.00020201 0.29728 0.00016269 547.2614120497151 103.9 0.86936 103.9 103.47 104.34 0 81 24 4 0 0 0 0.25854 1 20374 20374 34.967 29.099 1 32784000 31196 11232 20756 20770 30805 30805 -0.03380045524272646 NEVDIGGNIY 10 Unmodified _NEVDIGGNIY_ 0 0 0 ENST00000555520.1_1_15:93431416-93440966:+|nuORF ENST00000555520.1_1_15:93431416-93440966:+|nuORF ENST00000555520.1_1_15:93431416-93440966:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7806396484375 2 547.261653 1092.50875 -0.31573 -0.00017279 0.39382 0.00021552 0.078083 4.2732E-05 547.2618471078156 108.51 1.2183 104.19 103.62 104.84 -4.32 113 34 5 0 0 0 9.455E-08 1 21388 21388 157.8 85.873 1 48174000 31197 11232 20756 20770 30806 30806 -0.03380045524272646 NEVDIGGNIY 10 Unmodified _NEVDIGGNIY_ 0 0 0 ENST00000555520.1_1_15:93431416-93440966:+|nuORF ENST00000555520.1_1_15:93431416-93440966:+|nuORF ENST00000555520.1_1_15:93431416-93440966:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7808227539062 2 547.261653 1092.50875 -0.10267 -5.6186E-05 0.33306 0.00018227 0.2304 0.00012609 547.2617887684279 108.66 1.0691 104.21 103.71 104.78 -4.4518 100 30 4 0 0 0 0.00018388 1 20865 20865 133.05 87.031 1 36917000 31198 11232 20756 20770 30807 30807 -0.03380045524272646 NEVDIGGNIY 10 Unmodified _NEVDIGGNIY_ 0 0 0 ENST00000555520.1_1_15:93431416-93440966:+|nuORF ENST00000555520.1_1_15:93431416-93440966:+|nuORF ENST00000555520.1_1_15:93431416-93440966:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7901000976562 2 547.261653 1092.50875 0.75559 0.00041351 -0.51937 -0.00028423 0.23622 0.00012927 547.2612970076809 108.38 1.048 104.24 103.74 104.78 -4.135 101 29 5 0 0 0 9.455E-08 1 20864 20864 157.8 93.559 1 42732000 31199 11232 20756 20770 30808 30808 -0.03380045524272646 NEVEGKENYY 10 Unmodified _NEVEGKENYY_ 0 0 0 tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.77294921875 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 78.079 1 74.42 73.92 74.92 -3.6588 0 0 0 0.22588 1 14872 14872 7.1017 0.89594 1 31200 26356 20757 20771 30809 30809 -0.07632981703750374 NEVELLVM 8 Oxidation (M) _NEVELLVM(Oxidation (M))_ NEVELLVM(1) NEVELLVM(100) 0 0 1 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7671813964844 2 481.746793 961.479033 0.3093 0.000149 -0.20835 -0.00010037 0.10095 4.8633E-05 481.7466040420658 120.49 0.83554 115.97 115.57 116.41 -4.5221 42 23 3 0 0 0 0.047597 1 23727 23727 104.8 15.372 1 3224400 31201 7004 20758 20772 30810 30810 96 -0.003247007939648938 NEVELLVM 8 Oxidation (M) _NEVELLVM(Oxidation (M))_ NEVELLVM(1) NEVELLVM(100) 0 0 1 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7836608886719 2 481.746793 961.479033 0.65657 0.0003163 -0.43884 -0.00021141 0.21774 0.00010489 481.74654902775274 120.8 0.73475 116.16 115.76 116.5 -4.645 33 20 2 0 0 0 0.036491 1 23166 23166 100.37 15.015 1 1860700 31202 7004 20758 20772 30811 30811 96 -0.003247007939648938 NEVELLVM 8 Oxidation (M) _NEVELLVM(Oxidation (M))_ NEVELLVM(1) NEVELLVM(89) 0 0 1 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7657775878906 2 481.746793 961.479033 0.28287 0.00013627 0.02282 1.0993E-05 0.30569 0.00014726 481.7466813944795 120.62 0.78362 116.15 115.78 116.56 -4.467 38 21 2 0 0 0 0.042326 1 23229 23229 88.904 14.481 1 2698700 31203 7004 20758 20772 30812 30812 96 -0.003247007939648938 NEVELLVM 8 Oxidation (M) _NEVELLVM(Oxidation (M))_ 0 0 1 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 481.746793 961.479033 -0.0043142 -2.0784E-06 0.17881 8.6142E-05 0.1745 8.4064E-05 481.74681216047964 116.23 0.79967 116.23 115.77 116.57 0 0.10009 0.0002762 NaN 100.37 40 22 2 NaN NaN NaN NaN 0 NaN NaN 0 3729400 31204 7004 20758 20772 96 -0.003247007939648938 NEVENQIL 8 Unmodified _NEVENQIL_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2416687011719 2 479.745639 957.476725 0.13439 6.4475E-05 0.019882 9.5382E-06 0.15428 7.4013E-05 479.7456112014301 87.841 0.98279 84.091 83.623 84.606 -3.7501 73 27 4 0 0 0 0.64512 1 16829 16829 19.257 0 1 19843000 31205 3608;1457 20759 20773 30813 30813 -0.0037141320741511663 NEVENQIL 8 Unmodified _NEVENQIL_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.745639 957.476725 0.077033 3.6956E-05 0.084371 4.0477E-05 0.1614 7.7433E-05 479.7456618000925 84.022 1.0856 84.022 83.542 84.627 0 -0.023036 7.6719E-05 NaN 19.257 69 30 3 NaN NaN NaN NaN 0 NaN NaN 0 16173000 31206 3608;1457 20759 20773 -0.0037141320741511663 NEVENQIL 8 Unmodified _NEVENQIL_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.745639 957.476725 -0.053193 -2.5519E-05 0.14458 6.9364E-05 0.091391 4.3844E-05 479.7456499486554 87.737 1.0463 83.944 83.438 84.485 -3.7926 -0.10107 0.00013449 NaN 19.257 78 28 4 NaN NaN NaN NaN 0 NaN NaN 0 22501000 31207 3608;1457 20759 20773 -0.0037141320741511663 NEVENQIL 8 Unmodified _NEVENQIL_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.745639 957.476725 0.35685 0.0001712 -0.13931 -6.6834E-05 0.21753 0.00010436 479.74554735308993 88.118 1.0202 84.123 83.549 84.569 -3.9953 0.078025 -0.0001379 NaN 19.257 76 28 4 NaN NaN NaN NaN 0 NaN NaN 0 17118000 31208 3608;1457 20759 20773 -0.0037141320741511663 NEVFGRSEPG 10 Unmodified _NEVFGRSEPG_ 0 0 0 REV__nc|ENSG00000181222|P24928|POLR2A REV__nc|ENSG00000181222|P24928|POLR2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7813720703125 2 546.259445 1090.50434 0.2333 0.00012744 -0.15461 -8.4455E-05 0.078698 4.2989E-05 546.2593557474946 79.86 2.0036 76.35 75.8 77.804 -3.5102 162 56 5 0 0 0 0.34409 1 15537 15537 6.5879 0 1 213670000 + 31209 18723 20760 20774 30814 30814 -0.037295099471975846 NEVFKASI 8 Unmodified _NEVFKASI_ 0 0 0 REV__ENSG00000115594|ENST00000410023|IL1R1 REV__ENSG00000115594|ENST00000410023|IL1R1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7595520019531 2 454.247818 906.481082 NaN NaN NaN NaN NaN NaN NaN 85.021 1 85.021 84.521 85.521 0 0 0 0 0.20618 1 16590 16590 20.454 1.0146 1 + 31210 15442 20761 20775 30815 30815 0.024100960061332444 NEVGYQIR 8 Unmodified _NEVGYQIR_ 0 0 0 nc|ENSG00000143494|Q86V25-2|VASH2;nc|ENSG00000143494|Q86V25-5|VASH2;ENSG00000143494|ENST00000517399|VASH2;nc|ENSG00000143494|Q86V25-6|VASH2 nc|ENSG00000143494|Q86V25-2|VASH2 nc|ENSG00000143494|Q86V25-2|VASH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2575988769531 2 489.753798 977.493044 0.45715 0.00022389 0.89347 0.00043758 1.3506 0.00066147 489.7537462576308 44.041 0.82171 44.041 43.501 44.323 0 32 23 2 0 0 0 0.40222 2 8209 8161;8209 32.305 6.9062 1 2318300 31211 4496 20762 20776 30816;30817 30817 0.003397127493371954 NEVHLKKKF 9 Unmodified _NEVHLKKKF_ 0 0 0 ENST00000155926.8_1_2:12881375-12881429:+|nuORF ENST00000155926.8_1_2:12881375-12881429:+|nuORF ENST00000155926.8_1_2:12881375-12881429:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2103576660156 3 381.560869 1141.66078 -0.01149 -4.3843E-06 0.059509 2.2706E-05 0.048018 1.8322E-05 381.56092493694246 109.15 0.56281 104.96 104.63 105.19 -4.1826 25 15 2 0 0 0 0.64253 1 21021 21021 0.0033805 0 1 827220 31212 8075 20763 20777 30818 30818 0.09561400013944876 NEVIQTSKY 9 Unmodified _NEVIQTSKY_ 0 0 0 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENST00000493450.1_1_20:37659415-37667183:+|nuORF ENSG00000101452|ENST00000252011|DHX35 ENSG00000101452|ENST00000252011|DHX35 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2794799804688 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 40.511 1 40.511 40.011 41.011 0 0 0 0 0.23508 1 7535 7535 11.64 0 1 31213 2070 20764 20778 30819 30819 0.008088313724329055 NEVIQTSKY 9 Unmodified _NEVIQTSKY_ 0 0 0 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENST00000493450.1_1_20:37659415-37667183:+|nuORF ENSG00000101452|ENST00000252011|DHX35 ENSG00000101452|ENST00000252011|DHX35 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27880859375 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 43.441 1 43.441 42.941 43.941 0 0 0 0 0.1381 1 8136 8136 32.037 3.5506 1 31214 2070 20764 20778 30820 30820 0.008088313724329055 NEVIQTSKY 9 Unmodified _NEVIQTSKY_ 0 0 0 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENST00000493450.1_1_20:37659415-37667183:+|nuORF ENSG00000101452|ENST00000252011|DHX35 ENSG00000101452|ENST00000252011|DHX35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2782592773438 2 541.279846 1080.54514 0.17577 9.5141E-05 -0.50362 -0.0002726 -0.32785 -0.00017746 541.2795247463512 46.452 0.31291 43.611 43.415 43.728 -2.8409 13 8 2 0 0 0 0.13904 1 8757 8757 45.74 26.378 1 750630 31215 2070 20764 20778 30821 30821 0.008088313724329055 NEVIQTSKY 9 Unmodified _NEVIQTSKY_ 0 0 0 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENST00000493450.1_1_20:37659415-37667183:+|nuORF ENSG00000101452|ENST00000252011|DHX35 ENSG00000101452|ENST00000252011|DHX35 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2798461914062 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 46.522 1 43.655 43.155 44.155 -2.8666 0 0 0 0.039841 1 8469 8469 57.249 35.502 1 31216 2070 20764 20778 30822 30822 0.008088313724329055 NEVKPTEIY 9 Unmodified _NEVKPTEIY_ 0 0 0 nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS nc|ENSG00000112699|O60547-2|GMDS nc|ENSG00000112699|O60547-2|GMDS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7845458984375 2 546.782222 1091.54989 0.26751 0.00014627 -0.10113 -5.5295E-05 0.16638 9.0974E-05 546.7821625461286 62.53 0.97648 59.568 59.044 60.021 -2.9614 63 27 3 0 0 0 0.094316 2 12087 12038;12087 57.722 12.022 1 13658000 31217 2705 20765 20779 30823;30824 30824 0.007777155151870829 NEVKPTEIY 9 Unmodified _NEVKPTEIY_ 0 0 0 nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS nc|ENSG00000112699|O60547-2|GMDS nc|ENSG00000112699|O60547-2|GMDS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.784912109375 2 546.782222 1091.54989 0.31169 0.00017043 -0.025684 -1.4044E-05 0.28601 0.00015638 546.7822174626613 62.791 1.0331 59.546 59.067 60.1 -3.2451 68 29 3 0 0 0 0.031786 1 11776 11776 79.596 33.575 1 10724000 31218 2705 20765 20779 30825 30825 0.007777155151870829 NEVKPTEIY 9 Unmodified _NEVKPTEIY_ 0 0 0 nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS nc|ENSG00000112699|O60547-2|GMDS nc|ENSG00000112699|O60547-2|GMDS MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.782222 1091.54989 0.026891 1.4704E-05 0.32573 0.00017811 0.35263 0.00019281 546.7824366910476 59.607 0.81958 59.607 59.176 59.996 0 0.041949 0.00018418 NaN 79.596 40 22 2 NaN NaN NaN NaN 0 NaN NaN 0 9928600 31219 2705 20765 20779 0.007777155151870829 NEVKPTEIY 9 Unmodified _NEVKPTEIY_ 0 0 0 nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS nc|ENSG00000112699|O60547-2|GMDS nc|ENSG00000112699|O60547-2|GMDS MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.782222 1091.54989 0.17661 9.6565E-05 0.32829 0.00017951 0.5049 0.00027607 546.7823178018978 62.955 1.2038 59.54 58.769 59.973 -3.4158 -0.025599 0.00018698 NaN 79.596 71 33 3 NaN NaN NaN NaN 0 NaN NaN 0 10360000 31220 2705 20765 20779 0.007777155151870829 NEVLEHIDP 9 Unmodified _NEVLEHIDP_ 0 0 0 REV__nc|ENSG00000135063|Q15884-1|ENTREP1 REV__nc|ENSG00000135063|Q15884-1|ENTREP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2640991210938 2 533.264196 1064.51384 0.33125 0.00017664 -0.26311 -0.0001403 0.068141 3.6337E-05 533.2640072268089 43.578 1.0702 40.812 40.392 41.462 -2.7661 72 29 3 0 0 0 0.46882 1 7992 7992 21.537 6.2885 1 18739000 + 31221 16243 20766 20780 30826 30826 -0.015837416616705013 NEVLFAYLI 9 Unmodified _NEVLFAYLI_ 0 0 0 REV__ENSG00000132801|ENST00000255152|ZSWIM3 REV__ENSG00000132801|ENST00000255152|ZSWIM3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.265625 2 541.30005 1080.58555 NaN NaN NaN NaN NaN NaN NaN 87.21 1 83.481 82.981 83.981 -3.7289 0 0 0 0.23277 1 16682 16682 13.906 3.8321 1 + 31222 16136 20767 20781 30827 30827 0.04847797762840855 NEVLRVSY 8 Unmodified _NEVLRVSY_ 0 0 0 REV__nc|ENSG00000182489|Q6PP77-2|XKRX REV__nc|ENSG00000182489|Q6PP77-2|XKRX MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26580810546875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 92.584 1 92.584 92.084 93.084 0 0 0 0 0.20761 1 18103 18103 19.257 5.3509 1 + 31223 18783 20768 20782 30828 30828 0.023328834091330464 NEVMRLGGNP 10 Unmodified _NEVMRLGGNP_ 0 0 0 REV__tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1 REV__tr|U7T5G4|U7T5G4_FUSNUFormateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00052PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7727661132812 2 543.771665 1085.52878 NaN NaN NaN NaN NaN NaN NaN 145.7 1 140.59 140.09 141.09 -5.1108 0 0 0 0.22588 1 28163 28163 13.042 1.4022 1 + 31224 25412 20769 20783 30829 30829 -0.010565730653070204 NEVQTAKEF 9 Unmodified _NEVQTAKEF_ 0 0 0 ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2 ENST00000426421.5_1_7:116544367-116557918:+|nuORF ENST00000426421.5_1_7:116544367-116557918:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2860107421875 2 533.264196 1064.51384 0.27549 0.00014691 -0.39859 -0.00021256 -0.1231 -6.5646E-05 533.264001601987 40.739 1.1674 40.739 40.173 41.34 0 79 32 4 0 0 0 0.15128 2 7661 7661;7695 43.982 11.196 1 15087000 31225 7516 20770 20784 30830;30831 30830 -0.015837416616705013 NEVQTAKEF 9 Unmodified _NEVQTAKEF_ 0 0 0 ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2 ENST00000426421.5_1_7:116544367-116557918:+|nuORF ENST00000426421.5_1_7:116544367-116557918:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2642211914062 2 533.264196 1064.51384 -0.0022705 -1.2108E-06 0.027735 1.479E-05 0.025465 1.358E-05 533.2641804702288 43.638 0.94849 40.87 40.433 41.381 -2.7683 71 26 3 0 0 0 0.095704 1 8251 8251 57.249 17.299 1 16928000 31226 7516 20770 20784 30832 30832 -0.015837416616705013 NEVQTAKEF 9 Unmodified _NEVQTAKEF_ 0 0 0 ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2 ENST00000426421.5_1_7:116544367-116557918:+|nuORF ENST00000426421.5_1_7:116544367-116557918:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.277099609375 2 533.264196 1064.51384 0.33125 0.00017664 -0.26311 -0.0001403 0.068141 3.6337E-05 533.2640072268089 43.578 1.0702 40.812 40.392 41.462 -2.7661 72 29 3 0 0 0 0.11282 3 7947 7943;7947;7953 51.415 14.731 1 18739000 31227 7516 20770 20784 30833;30834;30835 30834 -0.015837416616705013 NEVQTAKEF 9 Unmodified _NEVQTAKEF_ 0 0 0 ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2 ENST00000426421.5_1_7:116544367-116557918:+|nuORF ENST00000426421.5_1_7:116544367-116557918:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2645263671875 2 533.264196 1064.51384 0.0087992 4.6923E-06 0.077146 4.1139E-05 0.085946 4.5832E-05 533.2642090971848 43.561 0.97993 40.813 40.381 41.361 -2.7475 72 27 3 0 0 0 0.11282 1 7968 7968 51.415 11.466 1 13351000 31228 7516 20770 20784 30836 30836 -0.015837416616705013 NEVQVADF 8 Unmodified _NEVQVADF_ 0 0 0 GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant;GZF1|p.P462Tfs*5|1|0.18|ENSG00000125812|chr20:23367016-23367017|-/A|frameshift_variant;ENSG00000125812|ENST00000338121|GZF1 GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.52789306640625 2 461.219257 920.423961 0.11132 5.1344E-05 -0.12908 -5.9533E-05 -0.017756 -8.1893E-06 461.2191190749401 96.013 0.72578 96.013 95.628 96.354 0 31 20 2 0 0 0 0.70928 1 18756 18756 13.042 2.9685 1 2304200 31229 3388 20771 20785 30837 30837 -0.039433712702361845 NEVQVADF 8 Unmodified _NEVQVADF_ 0 0 0 GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant;GZF1|p.P462Tfs*5|1|0.18|ENSG00000125812|chr20:23367016-23367017|-/A|frameshift_variant;ENSG00000125812|ENST00000338121|GZF1 GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.219257 920.423961 -0.055591 -2.564E-05 -0.099413 -4.5851E-05 -0.155 -7.1491E-05 461.21907147136693 100.06 0.76732 95.898 95.624 96.391 -4.1594 -0.081676 9.1443E-05 NaN 13.042 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1889800 31230 3388 20771 20785 -0.039433712702361845 NEVQVADF 8 Unmodified _NEVQVADF_ 0 0 0 GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant;GZF1|p.P462Tfs*5|1|0.18|ENSG00000125812|chr20:23367016-23367017|-/A|frameshift_variant;ENSG00000125812|ENST00000338121|GZF1 GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.219257 920.423961 0.22416 0.00010339 -0.34472 -0.00015899 -0.12056 -5.5605E-05 461.2188971130426 100.26 0.68678 95.965 95.711 96.398 -4.297 -0.01406 -0.00013483 NaN 13.042 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1449900 31231 3388 20771 20785 -0.039433712702361845 NEVQVADF 8 Unmodified _NEVQVADF_ 0 0 0 GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant;GZF1|p.P462Tfs*5|1|0.18|ENSG00000125812|chr20:23367016-23367017|-/A|frameshift_variant;ENSG00000125812|ENST00000338121|GZF1 GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant GZF1|p.H395Qfs*22|1|0.19|ENSG00000125812|chr20:23365568-23365568|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.219257 920.423961 0.27263 0.00012574 -0.27923 -0.00012879 -0.0066004 -3.0442E-06 461.219033762585 100.03 0.75838 96.041 95.623 96.381 -3.9895 0.061911 -7.4432E-05 NaN 13.042 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2009900 31232 3388 20771 20785 -0.039433712702361845 NEVRHIFTA 9 Unmodified _NEVRHIFTA_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7880249023438 2 543.788173 1085.56179 0.3713 0.00020191 -0.18442 -0.00010029 0.18688 0.00010162 544.289628081887 52.863 0.39304 52.863 52.608 53.001 0 20 10 3 0 0 0 0.029693 2 10039 10035;10039 81.915 51.69 1 3665900 31233 4279 20772 20786 30838;30839 30839 0.022433770490579263 NEVRHIFTA 9 Unmodified _NEVRHIFTA_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7792358398438 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 55.558 1 52.674 52.174 53.174 -2.8837 0 0 0 0.18247 1 10634 10634 26.021 14.526 1 31234 4279 20772 20786 30840 30840 0.022433770490579263 NEVRHIFTA 9 Unmodified _NEVRHIFTA_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7888793945312 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 55.651 1 52.767 52.267 53.267 -2.8837 0 0 0 0.16777 1 10654 10654 24.882 23.426 1 31235 4279 20772 20786 30841 30841 0.022433770490579263 NEVRHIFTA 9 Unmodified _NEVRHIFTA_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7883911132812 2 543.788173 1085.56179 0.084185 4.5779E-05 0.16459 8.95E-05 0.24877 0.00013528 543.7881708773742 56.029 0.41992 52.839 52.529 52.948 -3.1895 18 11 2 0 0 0 0.037522 3 10381 10330;10379;10381 76.825 46.6 1 2819600 31236 4279 20772 20786 30842;30843;30844 30844 0.022433770490579263 NEVRHIFTA 9 Unmodified _NEVRHIFTA_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77685546875 2 543.788173 1085.56179 0.090943 4.9454E-05 0.13549 7.3678E-05 0.22643 0.00012313 543.7882136306719 55.989 0.34936 52.813 52.622 52.971 -3.1761 15 9 2 0 0 0 0.73481 1 10369 10369 19.362 2.249 1 3379100 31237 4279 20772 20786 30845 30845 0.022433770490579263 NEVSATVIQ 9 Unmodified _NEVSATVIQ_ 0 0 0 nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1;IQCA1|p.N612Kfs*25|1|0.24|ENSG00000132321|chr2:236363813-236363814|-/T|frameshift_variant;nc|ENSG00000132321|Q86XH1-2|IQCA1;IQCA1|p.Q369Tfs*10|1|0.17|ENSG00000132321|chr2:236419178-236419179|-/T|frameshift_variant nc|ENSG00000132321|Q86XH1-5|IQCA1;IQCA1|p.Q369Tfs*10|1|0.17|ENSG00000132321|chr2:236419178-236419179|-/T|frameshift_variant nc|ENSG00000132321|Q86XH1-5|IQCA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25482177734375 2 480.753464 959.492375 -0.10718 -5.1527E-05 -0.059839 -2.8768E-05 -0.16702 -8.0295E-05 480.75335719003897 50.51 0.53223 47.629 47.36 47.892 -2.8811 30 14 3 0 0 0 0.34411 1 9619 9619 29.082 2.1979 1 3752500 31238 3715;11950 20773 20787 30846 30846 0.011008733096218748 NEVVAYLTA 9 Unmodified _NEVVAYLTA_ 0 0 0 REV__nc|ENSG00000067182|P19438-3|TNFRSF1A REV__nc|ENSG00000067182|P19438-3|TNFRSF1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2591552734375 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 87.227 1 83.277 82.777 83.777 -3.9503 0 0 0 0.22193 1 16612 16612 17.113 2.2746 1 + 31239 14210 20774 20788 30847 30847 0.01210061314975519 NEVVTQQY 8 Unmodified _NEVVTQQY_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25762939453125 2 490.737814 979.461075 0.068775 3.375E-05 -0.43659 -0.00021425 -0.36781 -0.0001805 490.73788190270085 46.598 1.1417 43.757 43.382 44.524 -2.8409 78 32 3 0 0 0 0.0039758 1 8805 8805 103.75 25.599 1 40497000 31240 1581 20775 20789 30848 30848 -0.029476997244614722 NEVVTQQY 8 Unmodified _NEVVTQQY_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26531982421875 2 490.737814 979.461075 0.074724 3.667E-05 -0.58327 -0.00028623 -0.50855 -0.00024956 490.7378665370008 46.678 1.1043 43.813 43.45 44.555 -2.8653 79 31 3 0 0 0 0.0034293 1 8545 8545 118.89 57.537 1 34132000 31241 1581 20775 20789 30849 30849 -0.029476997244614722 NEVVTQQY 8 Unmodified _NEVVTQQY_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2679138183594 2 490.737814 979.461075 -0.33248 -0.00016316 -0.05086 -2.4959E-05 -0.38334 -0.00018812 490.73810375389456 46.686 1.1794 43.82 43.406 44.586 -2.8666 83 33 3 0 0 0 2.7107000000000003E-57 1 8496 8496 176.84 87.934 1 27764000 31242 1581 20775 20789 30850 30850 -0.029476997244614722 NEWCHPEE 8 Unmodified _NEWCHPEE_ 0 0 0 REV__ENST00000595922.1_1_19:14920624-14932271:-|nuORF REV__ENST00000595922.1_1_19:14920624-14932271:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2810668945312 2 522.197999 1042.38144 NaN NaN NaN NaN NaN NaN NaN 52.393 1 52.393 51.893 52.893 0 0 0 0 0.21486 1 9958 9958 12.532 0 1 + 31243 23379 20776 20790 30851 30851 -0.13805089670131565 NEYDEPSC 8 Unmodified _NEYDEPSC_ 0 0 0 REV__ENST00000541779.5_1_9:113703765-113703867:-|nuORF REV__ENST00000541779.5_1_9:113703765-113703867:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.741455078125 2 478.66874 955.322927 NaN NaN NaN NaN NaN NaN NaN 45.659 1 42.792 42.292 43.292 -2.8666 0 0 0 0.21486 1 8291 8291 12.532 3.1841 1 + 31244 22868 20777 20791 30852 30852 -0.15652191035246688 NEYFTGAA 8 Unmodified _NEYFTGAA_ 0 0 0 REV__ENSG00000263002|ENST00000426739|ZNF234 REV__ENSG00000263002|ENST00000426739|ZNF234 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2152099609375 2 436.692875 871.371197 0.30961 0.0001352 0.2333 0.00010188 0.54291 0.00023708 436.69306664773484 29.583 0.58739 27.69 27.547 28.134 -1.8928 30 16 2 0 0 0 0.69031 1 5030 5030 15.847 0 1 773140 + 31245 19898 20778 20792 30853 30853 -0.06963329333041202 NEYFTGAA 8 Unmodified _NEYFTGAA_ 0 0 0 REV__ENSG00000263002|ENST00000426739|ZNF234 REV__ENSG00000263002|ENST00000426739|ZNF234 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.692875 871.371197 0.44062 0.00019242 0.72118 0.00031493 1.1618 0.00050735 436.6930927977906 29.709 0.69478 27.593 27.28 27.975 -2.1167 -0.067834 0.00020277 NaN 15.847 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 596250 + 31246 19898 20778 20792 -0.06963329333041202 NEYIVPMTE 9 Unmodified _NEYIVPMTE_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant;RYR2|p.K1745Nfs*25|1|0.49|ENSG00000198626|chr1:237614358-237614358|A/-|frameshift_variant;RYR2|p.L2146Gfs*3|1|0.05|ENSG00000198626|chr1:237628075-237628076|-/GGTCT|frameshift_variant;RYR2|p.A2213Lfs*22|1|0.28|ENSG00000198626|chr1:237633654-237633654|A/-|frameshift_variant ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7929077148438 2 548.254982 1094.49541 0.72758 0.0003989 -3.4463 -0.0018895 -2.7188 -0.0014906 548.253452079622 80.262 0.20409 80.262 80.11 80.314 0 7 5 2 0 0 0 0.73268 1 15607 15607 24.021 0 1 633720 31247 7465 20779 20793 30854 30854 -0.04805619627904889 NEYKSEGTF 9 Unmodified _NEYKSEGTF_ 0 0 0 nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 538.1446533203125 2 537.740554 1073.46655 0.27196 0.00014624 -0.025239 -1.3572E-05 0.24672 0.00013267 537.7404995524115 38.059 0.54889 35.722 35.431 35.98 -2.3375 41 15 4 0 0 0 0.76271 1 6718 6718 14.838 5.4551 1 21059000 31248 1739 20780 20794 30855 30855 -0.06724020932665553 NEYKSEGTF 9 Unmodified _NEYKSEGTF_ 0 0 0 nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 537.740554 1073.46655 0.23782 0.00012789 -0.15603 -8.3904E-05 0.081793 4.3984E-05 537.7404080437207 35.625 0.57845 35.625 35.346 35.925 0 -0.050323 -0.00022457 NaN 14.838 43 16 4 NaN NaN NaN NaN 0 NaN NaN 0 12222000 31249 1739 20780 20794 -0.06724020932665553 NEYKSEGTF 9 Unmodified _NEYKSEGTF_ 0 0 0 nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 537.740554 1073.46655 -0.19179 -0.00010314 0.47742 0.00025673 0.28563 0.0001536 537.7407746362635 38.211 0.48288 35.743 35.471 35.954 -2.4688 0.06711 0.0004567 NaN 14.838 38 13 4 NaN NaN NaN NaN 0 NaN NaN 0 21347000 31250 1739 20780 20794 -0.06724020932665553 NEYKSEGTF 9 Unmodified _NEYKSEGTF_ 0 0 0 nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 537.740554 1073.46655 0.26736 0.00014377 0.0098245 5.283E-06 0.27719 0.00014905 537.740518494786 38.054 0.53118 35.612 35.348 35.879 -2.4419 -0.063263 -4.6193E-05 NaN 14.838 41 14 4 NaN NaN NaN NaN 0 NaN NaN 0 23400000 31251 1739 20780 20794 -0.06724020932665553 NEYLLPESV 9 Unmodified _NEYLLPESV_ 0 0 0 nc|ENSG00000127952|Q9Y6J8-5|STYXL1;STYXL1|p.I161Lfs*25|1|0.06|ENSG00000127952|chr7:76005378-76005378|G/-|frameshift_variant;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 nc|ENSG00000127952|Q9Y6J8-5|STYXL1 nc|ENSG00000127952|Q9Y6J8-5|STYXL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2720947265625 2 532.268947 1062.52334 0.088749 4.7238E-05 0.16444 8.7524E-05 0.25318 0.00013476 532.2689594724939 136.38 0.8454 136.38 135.95 136.8 0 54 23 3 0 0 0 0.033473 3 26986 26986;27035;27037 81.552 66.565 1 17394000 31252 3498 20781 20795 30856;30857;30858 30856 -0.005419733761300449 NEYLLPESV 9 Unmodified _NEYLLPESV_ 0 0 0 nc|ENSG00000127952|Q9Y6J8-5|STYXL1;STYXL1|p.I161Lfs*25|1|0.06|ENSG00000127952|chr7:76005378-76005378|G/-|frameshift_variant;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 nc|ENSG00000127952|Q9Y6J8-5|STYXL1 nc|ENSG00000127952|Q9Y6J8-5|STYXL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.271728515625 2 532.268947 1062.52334 0.10367 5.5179E-05 0.24233 0.00012898 0.34599 0.00018416 532.2690177628067 141.27 0.93837 136.62 136.19 137.13 -4.6493 64 26 3 0 0 0 0.045725 2 27938 27901;27938 72.968 31.012 1 18903000 31253 3498 20781 20795 30859;30860 30860 -0.005419733761300449 NEYLLPESV 9 Unmodified _NEYLLPESV_ 0 0 0 nc|ENSG00000127952|Q9Y6J8-5|STYXL1;STYXL1|p.I161Lfs*25|1|0.06|ENSG00000127952|chr7:76005378-76005378|G/-|frameshift_variant;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 nc|ENSG00000127952|Q9Y6J8-5|STYXL1 nc|ENSG00000127952|Q9Y6J8-5|STYXL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27197265625 2 532.268947 1062.52334 0.45809 0.00024383 -0.15318 -8.1533E-05 0.30491 0.00016229 532.268827079523 141.6 0.86823 136.61 136.24 137.11 -4.9877 59 24 3 0 0 0 0.023341 1 27273 27273 88.954 35.121 1 14002000 31254 3498 20781 20795 30861 30861 -0.005419733761300449 NEYLLPESV 9 Unmodified _NEYLLPESV_ 0 0 0 nc|ENSG00000127952|Q9Y6J8-5|STYXL1;STYXL1|p.I161Lfs*25|1|0.06|ENSG00000127952|chr7:76005378-76005378|G/-|frameshift_variant;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 nc|ENSG00000127952|Q9Y6J8-5|STYXL1 nc|ENSG00000127952|Q9Y6J8-5|STYXL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2723388671875 2 532.268947 1062.52334 0.32591 0.00017347 0.074003 3.9389E-05 0.39991 0.00021286 532.2688871052551 141.41 0.98434 136.54 136.22 137.2 -4.8678 69 27 4 0 0 0 0.039965 2 27285 27282;27285 105.38 38.197 1 17350000 31255 3498 20781 20795 30862;30863 30863 -0.005419733761300449 NEYPSRVAF 9 Unmodified _NEYPSRVAF_ 0 0 0 nc|ENSG00000106636|O15498-2|YKT6;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6 nc|ENSG00000106636|O15498-2|YKT6 nc|ENSG00000106636|O15498-2|YKT6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.266845703125 2 541.766906 1081.51926 0.1583 8.5762E-05 0.29233 0.00015838 0.45063 0.00024414 541.7669998658323 86.617 1.3117 82.89 82.296 83.608 -3.727 101 36 4 0 0 0 0.0019732 1 16981 16981 140.63 69.5 1 80530000 31256 2399 20782 20796 30864 30864 -0.018240180791963212 NEYPSRVAF 9 Unmodified _NEYPSRVAF_ 0 0 0 nc|ENSG00000106636|O15498-2|YKT6;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6 nc|ENSG00000106636|O15498-2|YKT6 nc|ENSG00000106636|O15498-2|YKT6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2652587890625 2 541.766906 1081.51926 0.32736 0.00017735 -0.027009 -1.4633E-05 0.30035 0.00016272 541.7668098309549 86.761 1.3323 82.811 82.261 83.594 -3.9503 107 37 4 0 0 0 0.026784 1 16473 16473 110.55 62.207 1 71688000 31257 2399 20782 20796 30865 30865 -0.018240180791963212 NEYPSRVAF 9 Unmodified _NEYPSRVAF_ 0 0 0 nc|ENSG00000106636|O15498-2|YKT6;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6 nc|ENSG00000106636|O15498-2|YKT6 nc|ENSG00000106636|O15498-2|YKT6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2635498046875 2 541.766906 1081.51926 0.18089 9.8001E-05 0.20223 0.00010956 0.38312 0.00020756 541.7669614214841 86.517 1.2674 82.788 82.274 83.542 -3.7289 114 35 6 0 0 0 0.0019732 1 16586 16586 140.63 73.289 1 77529000 31258 2399 20782 20796 30866 30866 -0.018240180791963212 NEYQQVTY 8 Unmodified _NEYQQVTY_ 0 0 0 REV__ITGA1|p.F633Lfs*11|1|0.19|ENSG00000213949|chr5:52915500-52915500|T/-|frameshift_variant REV__ITGA1|p.F633Lfs*11|1|0.19|ENSG00000213949|chr5:52915500-52915500|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2825927734375 2 522.735271 1043.45599 0.4145 0.00021667 1.9864 0.0010384 2.4009 0.001255 522.7365523039017 42.398 0.241 42.398 42.215 42.456 0 9 6 2 0 0 0 1.0011 1 7891 7891 0.45834 0 1 466360 + 31259 19654 20783 20797 30867 30867 -0.06400003587077663 NEYSKVLQ 8 Unmodified _NEYSKVLQ_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.264404296875 2 490.756007 979.497461 -0.18865 -9.2582E-05 0.71915 0.00035293 0.5305 0.00026034 490.75643875846976 57.064 1.0607 53.888 53.58 54.641 -3.1761 45 29 2 0 0 0 0.9455 1 10582 10582 11.64 0 1 860790 31260 3551 20784 20798 30868 30868 0.006891771722393969 NFALRGPESP 10 Unmodified _NFALRGPESP_ 0 0 0 REV__ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant REV__ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7886962890625 2 544.28018 1086.54581 0.31886 0.00017355 0.18445 0.0001004 0.50331 0.00027394 544.2803617825891 20.864 0.52661 20.864 20.597 21.124 0 30 14 3 0 0 0 0.81109 1 3476 3476 18.146 18.146 1 946110 + 31261 16118 20785 20799 30869 30869 0.005996708121301708 NFCCCLCCC 9 Unmodified _NFCCCLCCC_ 0 0 0 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 506.23052978515625 2 506.137815 1010.26108 NaN NaN NaN NaN NaN NaN NaN 37.9 1 35.458 34.958 35.958 -2.4419 0 0 0 0.19635 1 6730 6730 0 0 1 + 31262 14763 20786 20800 30870 30870 -0.24364319847268234 NFEVNNEI 8 Unmodified _NFEVNNEI_ 0 0 0 ENST00000395290.6_1_11:47489658-47490021:-|nuORF ENST00000395290.6_1_11:47489658-47490021:-|nuORF ENST00000395290.6_1_11:47489658-47490021:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2744140625 2 489.729989 977.445425 -0.024862 -1.2176E-05 0.76641 0.00037533 0.74155 0.00036316 489.73038201344946 37.699 0.86695 35.362 34.701 35.568 -2.3375 32 24 2 0 0 0 0.49114 1 6640 6640 28.487 0 1 2081500 31263 9427 20787 20801 30871 30871 -0.04419986241521201 NFEVNNEI 8 Unmodified _NFEVNNEI_ 0 0 0 ENST00000395290.6_1_11:47489658-47490021:-|nuORF ENST00000395290.6_1_11:47489658-47490021:-|nuORF ENST00000395290.6_1_11:47489658-47490021:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.729989 977.445425 -0.24657 -0.00012075 0.32892 0.00016108 0.08235 4.0329E-05 489.7301229280955 37.737 0.52032 35.269 35.017 35.537 -2.4688 -0.063118 -0.00010681 NaN 28.487 23 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2367700 31264 9427 20787 20801 -0.04419986241521201 NFEVNNEI 8 Unmodified _NFEVNNEI_ 0 0 0 ENST00000395290.6_1_11:47489658-47490021:-|nuORF ENST00000395290.6_1_11:47489658-47490021:-|nuORF ENST00000395290.6_1_11:47489658-47490021:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.729989 977.445425 0.19217 9.411E-05 0.55996 0.00027423 0.75213 0.00036834 489.7303314706237 37.713 0.89083 35.365 34.687 35.578 -2.3479 0.033316 0.00011949 NaN 28.487 37 25 3 NaN NaN NaN NaN 0 NaN NaN 0 2394800 31265 9427 20787 20801 -0.04419986241521201 NFFALLPHQ 9 Unmodified _NFFALLPHQ_ 0 0 0 nc|ENSG00000003509|Q7L592-2|NDUFAF7;ENSG00000003509|ENST00000002125|NDUFAF7 nc|ENSG00000003509|Q7L592-2|NDUFAF7 nc|ENSG00000003509|Q7L592-2|NDUFAF7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7914428710938 2 543.790184 1085.56581 NaN NaN NaN NaN NaN NaN NaN 131.24 1 126.4 125.9 126.9 -4.8355 0 0 0 0.21065 1 25202 25202 20.454 5.8719 1 31266 969 20788 20802 30872 30872 0.026454665427536384 NFFFFFFFFRY 11 Unmodified _NFFFFFFFFRY_ 0 0 0 ENST00000555275.5_1_14:58740703-58758361:-|nuORF ENST00000555275.5_1_14:58740703-58758361:-|nuORF ENST00000555275.5_1_14:58740703-58758361:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7794189453125 3 543.595691 1627.76524 NaN NaN NaN NaN NaN NaN NaN 170.55 1 165.77 165.27 166.27 -4.7898 0 0 0 0.22632 1 34620 34620 0.172 0.077159 1 31267 11231 20789 20803 30873 30873 -0.0235289822935556 NFFNMRCLRQI 11 Unmodified _NFFNMRCLRQI_ 0 0 0 REV__ENST00000480128.1_1_12:46233959-46234175:+|nuORF REV__ENST00000480128.1_1_12:46233959-46234175:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24468994140625 3 481.244558 1440.71184 NaN NaN NaN NaN NaN NaN NaN 114.8 1 114.8 114.3 115.3 0 0 0 0 0.22632 1 22588 22588 1.4551 0 1 + 31268 22161 20790 20804 30874 30874 0.009116577248505564 NFKLYIPHH 9 Unmodified _NFKLYIPHH_ 0 0 0 REV__ENSG00000009694|ENST00000371130|TENM1 REV__ENSG00000009694|ENST00000371130|TENM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.2498779296875 3 390.213581 1167.61891 NaN NaN NaN NaN NaN NaN NaN 63.075 1 59.818 59.318 60.318 -3.2567 0 0 0 0.23508 1 11835 11835 2.7352 0.64919 1 + 31269 13910 20791 20805 30875 30875 0.04180844325401267 NFKTLSIDRWV 11 Unmodified _NFKTLSIDRWV_ 0 0 0 REV__ENSG00000105205|ENST00000221804|CLC REV__ENSG00000105205|ENST00000221804|CLC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2325439453125 3 460.254105 1377.74048 0.46734 0.00021509 -0.31611 -0.00014549 0.15122 6.9601E-05 460.2539079645746 116.87 1.0591 112.51 111.99 113.05 -4.3585 63 29 3 0 0 0 0.74408 1 22414 22414 8.7518 4.3456 1 3001800 + 31270 14969 20792 20806 30876 30876 0.06672421897269487 NFLASNIH 8 Unmodified _NFLASNIH_ 0 0 0 ENSG00000112299|ENST00000367928|VNN1 ENSG00000112299|ENST00000367928|VNN1 ENSG00000112299|ENST00000367928|VNN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22698974609375 2 458.237784 914.461016 -0.12358 -5.6631E-05 0.88877 0.00040727 0.76518 0.00035064 458.2381682955414 59.788 0.94103 56.855 56.469 57.41 -2.9333 35 26 2 0 0 0 8448 1 11601 11601 0.62683 0.21856 1 1770400 31271 2685 20793 20807 30877 30877 0.00036345066178000707 NFLLNKTEPQ 10 Unmodified _NFLLNKTEPQ_ 0 0 0 REV__LTF|p.S655P|1|0.33|ENSG00000012223|chr3:46438075-46438075|A/G|missense_variant REV__LTF|p.S655P|1|0.33|ENSG00000012223|chr3:46438075-46438075|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3013916015625 2 602.322045 1202.62954 NaN NaN NaN NaN NaN NaN NaN 146.53 1 141.53 141.03 142.03 -5 0 0 0 0.22588 1 28357 28357 9.3831 0.63772 1 + 31272 23824 20794 20808 30878 30878 0.036327821891973144 NFPHKLISW 9 Unmodified _NFPHKLISW_ 0 0 0 REV__IL20RB|p.N134K|1|0.29|ENSG00000174564|chr3:136982346-136982346|C/G|missense_variant REV__IL20RB|p.N134K|1|0.29|ENSG00000174564|chr3:136982346-136982346|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2112121582031 3 381.209948 1140.60801 NaN NaN NaN NaN NaN NaN NaN 107.4 1 103.27 102.77 103.77 -4.135 0 0 0 0.23508 1 20656 20656 2.2828 0.95313 1 + 31273 18419 20795 20809 30879 30879 0.04333441951143868 NFPVRNPRS 9 Unmodified _NFPVRNPRS_ 0 0 0 REV__nc|ENSG00000140153|Q8TBZ3-4|WDR20 REV__nc|ENSG00000140153|Q8TBZ3-4|WDR20 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7939453125 2 543.793789 1085.57303 NaN NaN NaN NaN NaN NaN NaN 152.74 1 147.48 146.98 147.98 -5.2669 0 0 0 0.22823 1 29611 29611 15.248 2.206 1 + 31274 16561 20796 20810 30880 30880 0.03366199143169979 NFRMYVFQLW 10 Unmodified _NFRMYVFQLW_ 0 0 0 REV__nc|ENSG00000141485|Q86YT5-2|SLC13A5 REV__nc|ENSG00000141485|Q86YT5-2|SLC13A5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 352.1822204589844 4 351.67868 1402.68561 -0.37315 -0.00013123 1.6107 0.00056645 1.2375 0.00043522 351.9299372251141 69.952 0.17549 66.772 66.649 66.825 -3.1796 6 4 2 0 0 0 0.91149 1 13599 13599 0.77653 0.078866 1 789530 + 31275 16631 20797 20811 30881 30881 0.0003771182500713621 NFRRRKRRKRR 11 Unmodified _NFRRRKRRKRR_ 0 0 0 ENST00000488854.6_1_3:113082116-113098301:-|nuORF ENST00000488854.6_1_3:113082116-113098301:-|nuORF ENST00000488854.6_1_3:113082116-113098301:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3777465820312 2 815.017081 1628.01961 NaN NaN NaN NaN NaN NaN NaN 157.87 1 157.87 157.37 158.37 0 0 0 0 0.23698 1 31691 31691 0.30703 0.30703 1 31276 10489 20798 20812 30882 30882 0.23072026153022307 NFRRRKRRKRR 11 Unmodified _NFRRRKRRKRR_ 0 0 0 ENST00000488854.6_1_3:113082116-113098301:-|nuORF ENST00000488854.6_1_3:113082116-113098301:-|nuORF ENST00000488854.6_1_3:113082116-113098301:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.781005859375 3 543.68048 1628.01961 0.22583 0.00012278 -0.49952 -0.00027158 -0.2737 -0.0001488 543.679872839447 130.2 0.1073 125.56 125.47 125.58 -4.6359 4 2 2 0 0 0 0.89136 1 25655 25655 0 0 1 650440 31277 10489 20798 20812 30883 30883 0.23072026153022307 NFRRRKRRKRR 11 Unmodified _NFRRRKRRKRR_ 0 0 0 ENST00000488854.6_1_3:113082116-113098301:-|nuORF ENST00000488854.6_1_3:113082116-113098301:-|nuORF ENST00000488854.6_1_3:113082116-113098301:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3660888671875 2 815.017081 1628.01961 NaN NaN NaN NaN NaN NaN NaN 160.54 1 155.31 154.81 155.81 -5.2299 0 0 0 0.22632 1 31174 31174 0 0 1 31278 10489 20798 20812 30884 30884 0.23072026153022307 NFSSPKLSW 9 Unmodified _NFSSPKLSW_ 0 0 0 REV__ADGRV1|p.G696S|1|0.15|ENSG00000164199|chr5:90637794-90637794|G/A|missense_variant REV__ADGRV1|p.G696S|1|0.15|ENSG00000164199|chr5:90637794-90637794|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27099609375 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 166.81 1 166.81 166.31 167.31 0 0 0 0 0.19698 1 34026 34026 0.40827 0.2854 1 + 31279 12968 20799 20813 30885 30885 -0.0005883007379452465 NFSTPSLPG 9 Unmodified _NFSTPSLPG_ 0 0 0 REV__nc|ENSG00000141576|Q96PX1-2|RNF157 REV__nc|ENSG00000141576|Q96PX1-2|RNF157 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.230712890625 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 133.39 1 133.39 132.89 133.89 0 0 0 0 0.22621 1 26389 26389 15.847 0 1 + 31280 16642 20800 20814 30886 30886 -0.017787808905495694 NFTEPPPQ 8 Unmodified _NFTEPPPQ_ 0 0 0 REV__DCTN1|p.D554N|1|0.12|ENSG00000204843|chr2:74369139-74369139|C/T|missense_variant REV__DCTN1|p.D554N|1|0.12|ENSG00000204843|chr2:74369139-74369139|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24212646484375 2 465.2218 928.429047 0.51056 0.00023752 -0.9702 -0.00045136 -0.45964 -0.00021384 465.22124678101346 119.5 0.88535 114.85 114.42 115.31 -4.645 41 24 2 0 0 0 8448 1 22968 22968 0.12286 0 1 2141400 + 31281 13648 20801 20815 30887 30887 -0.03803067407625349 NFVGFKVSPLE 11 Unmodified _NFVGFKVSPLE_ 0 0 0 tr|U7SV03|U7SV03_FUSNUDUF340domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01461PE=4SV=1 tr|U7SV03|U7SV03_FUSNUDUF340domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01461PE=4SV=1 tr|U7SV03|U7SV03_FUSNUDUF340domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01461PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1714782714844 4 309.921032 1235.65502 -1.4866 -0.00046072 -0.46055 -0.00014274 -1.9471 -0.00060345 309.9208938206541 20.867 0.37755 19.145 18.975 19.353 -1.7211 13 10 2 0 0 0 0.80759 1 3242 3242 2.6312 0.13275 1 544940 31282 26223 20802 20816 30888 30888 0.04662256711617374 NFVIYGWG 8 Unmodified _NFVIYGWG_ 0 0 0 REV__TMEM64|p.L181F|1|0.27|ENSG00000180694|chr8:90645365-90645365|G/A|missense_variant REV__TMEM64|p.L181F|1|0.27|ENSG00000180694|chr8:90645365-90645365|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.1614074707031 3 319.160594 954.459953 NaN NaN NaN NaN NaN NaN NaN 33.614 1 33.614 33.114 34.114 0 0 0 0 0.21486 1 6140 6140 0.45834 0 1 + 31283 24822 20803 20817 30889 30889 -0.019098693027103764 NFYFIRKV 8 Unmodified _NFYFIRKV_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7864990234375 2 543.808377 1085.6022 0.22567 0.00012272 -0.0084843 -4.6138E-06 0.21718 0.00011811 543.808303356675 115.35 0.7881 110.88 110.43 111.22 -4.4726 35 22 2 0 0 0 8448 1 22687 22687 0.12286 0 1 2517800 + 31284 19273 20804 20818 30890 30890 0.06282343439443139 NFYKQFWQL 9 Unmodified _NFYKQFWQL_ 0 0 0 REV__MIA3|p.R938W|1|0.32|ENSG00000154305|chr1:222630032-222630032|C/T|missense_variant REV__MIA3|p.R938W|1|0.32|ENSG00000154305|chr1:222630032-222630032|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.241455078125 3 425.216991 1272.62914 NaN NaN NaN NaN NaN NaN NaN 53.006 1 50.122 49.622 50.622 -2.8837 0 0 0 0.19636 1 10096 10096 0.073264 0.069883 1 + 31285 23856 20805 20819 30891 30891 0.0037340725998546986 NGAFMPKKS 9 Unmodified _NGAFMPKKS_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-4|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25537109375 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 105.84 1 101.58 101.08 102.08 -4.2638 0 0 0 0.22621 1 20833 20833 15.847 0 1 31286 2583;12720;12282 20806 20820 30892 30892 0.005578448826440763 NGALKKTEAF 10 Unmodified _NGALKKTEAF_ 0 0 0 nc|ENSG00000197408|P20813-2|CYP2B6;ENSG00000197408|ENST00000324071|CYP2B6 nc|ENSG00000197408|P20813-2|CYP2B6 nc|ENSG00000197408|P20813-2|CYP2B6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2022399902344 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 158.41 1 158.41 157.91 158.91 0 0 0 0 0.22588 1 31807 31807 1.7423 0.089654 1 31287 12542 20807 20821 30893 30893 0.046171279889904326 NGCDDEADECP 11 Unmodified _NGCDDEADECP_ 0 0 0 REV__C9|p.C142Afs*6|1|0.25|ENSG00000113600|chr5:39341199-39341199|G/-|frameshift_variant REV__C9|p.C142Afs*6|1|0.25|ENSG00000113600|chr5:39341199-39341199|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 583.8868408203125 2 584.181885 1166.34922 NaN NaN NaN NaN NaN NaN NaN 169.56 1 164.77 164.27 165.27 -4.7898 0 0 0 0.22632 1 34355 34355 0 0 1 + 31288 13229 20808 20822 30894 30894 -0.22730289926107616 NGDCDCGEC 9 Unmodified _NGDCDCGEC_ 0 0 0 ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant;ENSG00000115221|ENST00000283249|ITGB6 ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23858642578125 2 458.117503 914.220452 NaN NaN NaN NaN NaN NaN NaN 73.219 1 73.219 72.719 73.719 0 0 0 0 0.23508 1 14209 14209 0 0 1 31289 2831 20809 20823 30895 30895 -0.24008923370024604 NGDCDCGEC 9 Unmodified _NGDCDCGEC_ 0 0 0 ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant;ENSG00000115221|ENST00000283249|ITGB6 ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.24005126953125 2 458.117503 914.220452 NaN NaN NaN NaN NaN NaN NaN 59.529 1 56.306 55.806 56.806 -3.2237 0 0 0 0.23508 1 11122 11122 0 0 1 31290 2831 20809 20823 30896 30896 -0.24008923370024604 NGDCDCGEC 9 Unmodified _NGDCDCGEC_ 0 0 0 ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant;ENSG00000115221|ENST00000283249|ITGB6 ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant ITGB6|p.P607Lfs*45|1|0.32|ENSG00000115221|chr2:160126442-160126442|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2366638183594 2 458.117503 914.220452 0.22144 0.00010144 0.17075 7.8222E-05 0.39219 0.00017967 458.11716509317256 75.846 0.17184 72.213 72.1 72.272 -3.6337 6 4 2 0 0 0 0.65565 1 14414 14414 0 0 1 500070 31291 2831 20809 20823 30897 30897 -0.24008923370024604 NGFSAWFV 8 Unmodified _NGFSAWFV_ 0 0 0 REV__ENST00000537850.1_1_14:22887419-22887566:-|nuORF REV__ENST00000537850.1_1_14:22887419-22887566:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1646728515625 3 309.816827 926.428653 -0.50067 -0.00015512 0.67635 0.00020954 0.17568 5.4429E-05 309.8170253051677 53.669 0.45693 50.785 50.52 50.977 -2.8837 23 12 2 0 0 0 0.77935 1 10224 10224 3.5965 0 1 1729400 + 31292 22829 20810 20824 30898 30898 -0.03750442336809101 NGFSAWFV 8 Unmodified _NGFSAWFV_ 0 0 0 REV__ENST00000537850.1_1_14:22887419-22887566:-|nuORF REV__ENST00000537850.1_1_14:22887419-22887566:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 309.816827 926.428653 -0.72768 -0.00022545 0.94727 0.00029348 0.21959 6.8031E-05 309.81705435217714 54.015 0.34889 50.877 50.571 50.92 -3.1377 -0.047719 0.00028392 NaN 3.5965 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 873610 + 31293 22829 20810 20824 -0.03750442336809101 NGGGGGFG 8 Unmodified _NGGGGGFG_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;chr12:54283228-54283827|474|19.73|0.0|20.91|+|2|HNRNPA1,HNRNPA1|1;chr12:54283225-54283827|478|34.15|0.0|21.7|+|2|HNRNPA1,HNRNPA1|1 ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7609252929688 1 622.257965 621.250688 0.40795 0.00025385 -0.7493 -0.00046626 -0.34134 -0.0002124 622.2601553747581 63.478 0.13973 60.062 60.009 60.149 -3.4158 5 3 2 0 0 0 1.028 1 11850 11850 0 0 1 371220 31294 3929 20811 20825 30899 30899 -0.07508692535986938 NGGGGGFGG 9 Unmodified _NGGGGGFGG_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;chr12:54283228-54283827|474|19.73|0.0|20.91|+|2|HNRNPA1,HNRNPA1|1;chr12:54283225-54283827|478|34.15|0.0|21.7|+|2|HNRNPA1,HNRNPA1|1 ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 340.1431579589844 2 340.143353 678.272152 NaN NaN NaN NaN NaN NaN NaN 46.676 1 43.835 43.335 44.335 -2.8409 0 0 0 0.19635 1 8807 8807 0 0 1 31295 3929 20812 20826 30900 30900 -0.07985307507271955 NGGGGGGGGD 10 Unmodified _NGGGGGGGGD_ 0 0 0 REV__nc|ENSG00000166912|Q9NXD2-2|MTMR10 REV__nc|ENSG00000166912|Q9NXD2-2|MTMR10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.54339599609375 2 352.633349 703.252145 NaN NaN NaN NaN NaN NaN NaN 54.257 1 54.257 53.757 54.757 0 0 0 0 2.8426 1 10345 10345 0 0 1 + 31296 17889 20813 20827 30901 30901 -0.11135103237893418 NGGSIRLVM 9 Unmodified _NGGSIRLVM_ 0 0 0 REV__TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant REV__TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1754455566406 3 316.176138 945.506586 NaN NaN NaN NaN NaN NaN NaN 5.8145 1 4.7745 4.2745 5.2745 -1.04 0 0 0 0.23508 1 333 333 0.20686 0 1 + 31297 24833 20814 20828 30902 30902 0.03165247256913517 NGGTIYAFS 9 Unmodified _NGGTIYAFS_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24884033203125 2 465.2218 928.429047 NaN NaN NaN NaN NaN NaN NaN 46.1 1 43.259 42.759 43.759 -2.8409 0 0 0 0.19687 1 8697 8697 8.1555 0 1 31298 1484 20815 20829 30903 30903 -0.0380306740761398 NGGVGRCA 8 Unmodified _NGGVGRCA_ 0 0 0 ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17 ENST00000582935.1_1_18:47016781-47017264:-|nuORF ENST00000582935.1_1_18:47016781-47017264:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.174072265625 2 367.17413 732.333707 NaN NaN NaN NaN NaN NaN NaN 132.14 1 127.34 126.84 127.84 -4.799 0 0 0 0.2343 1 25442 25442 0.62683 0.50396 1 31299 7977 20816 20830 30904 30904 -0.04316699079663522 NGGVKPGG 8 Unmodified _NGGVKPGG_ 0 0 0 REV__ENST00000486796.1_1_3:33686156-33700574:-|nuORF REV__ENST00000486796.1_1_3:33686156-33700574:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.1859130859375 2 343.18502 684.355488 NaN NaN NaN NaN NaN NaN NaN 67.887 1 64.56 64.06 65.06 -3.3268 0 0 0 0.23899 1 12808 12808 1.3295 0 1 + 31300 22242 20817 20831 30905 30905 0.0006842894057399462 NGIIHAAV 8 Unmodified _NGIIHAAV_ 0 0 0 DNAJC13|p.T1375Hfs*28|1|0.18|ENSG00000138246|chr3:132496626-132496626|A/-|frameshift_variant;DNAJC13|p.G1667Vfs*22|1|0.33|ENSG00000138246|chr3:132505410-132505410|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13;ENST00000471925.1_1_3:132175145-132176248:+|nuORF DNAJC13|p.T1375Hfs*28|1|0.18|ENSG00000138246|chr3:132496626-132496626|A/-|frameshift_variant DNAJC13|p.T1375Hfs*28|1|0.18|ENSG00000138246|chr3:132496626-132496626|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 397.8248596191406 2 397.729595 793.444637 NaN NaN NaN NaN NaN NaN NaN 66.952 1 63.625 63.125 64.125 -3.3268 0 0 0 0.22934 1 12616 12616 3.5871 2.3722 1 31301 874 20818 20832 30906 30906 0.03965263900079208 NGKINLAEP 9 Unmodified _NGKINLAEP_ 0 0 0 REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.19500732421875 3 319.178425 954.513445 0.3356 0.00010712 -0.63093 -0.00020138 -0.29533 -9.4261E-05 319.1781676329759 30.228 0.45538 28.335 28.101 28.556 -1.8928 40 12 4 0 0 0 0.35556 1 5166 5166 12.241 2.1667 1 8572700 + 31302 12998 20819 20833 30907 30907 0.03436883409131042 NGKINLAEP 9 Unmodified _NGKINLAEP_ 0 0 0 REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 319.178425 954.513445 -0.43355 -0.00013838 0.22563 7.2016E-05 -0.20792 -6.6364E-05 319.17842229637455 28.409 0.45152 28.409 28.147 28.598 0 0.08592 0.00046829 NaN 12.241 37 12 4 NaN NaN NaN NaN 0 NaN NaN 0 6501500 + 31303 12998 20819 20833 0.03436883409131042 NGKINLAEP 9 Unmodified _NGKINLAEP_ 0 0 0 REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 319.178425 954.513445 0.2058 6.5687E-05 -0.46593 -0.00014871 -0.26013 -8.3027E-05 319.17822557361416 30.369 0.5654 28.253 27.941 28.507 -2.1167 -0.070316 -0.0001939 NaN 12.241 44 15 4 NaN NaN NaN NaN 0 NaN NaN 0 8305800 + 31304 12998 20819 20833 0.03436883409131042 NGKINLAEP 9 Unmodified _NGKINLAEP_ 0 0 0 REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 319.178425 954.513445 0.3356 0.00010712 -0.63093 -0.00020138 -0.29533 -9.4261E-05 319.1781676329759 30.228 0.45538 28.335 28.101 28.556 -1.8928 0.012127 -0.0003519 NaN 12.241 40 12 4 NaN NaN NaN NaN 0 NaN NaN 0 8572700 + 31305 12998 20819 20833 0.03436883409131042 NGKSYSTY 8 Unmodified _NGKSYSTY_ 0 0 0 CON__Q32PI4 CON__Q32PI4 CON__Q32PI4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23614501953125 2 460.211432 918.408311 NaN NaN NaN NaN NaN NaN NaN 40.154 1 37.614 37.114 38.114 -2.5398 0 0 0 0.23664 1 7186 7186 3.2813 3.273 1 + 31306 690 20820 20834 30908 30908 -0.05415657787273176 NGLKEAAF 8 Unmodified _NGLKEAAF_ 0 0 0 CPNE4|p.D109A|1|0.21|ENSG00000196353|chr3:131723480-131723480|T/G|missense_variant CPNE4|p.D109A|1|0.21|ENSG00000196353|chr3:131723480-131723480|T/G|missense_variant CPNE4|p.D109A|1|0.21|ENSG00000196353|chr3:131723480-131723480|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2352294921875 2 425.226885 848.439217 0.062552 2.6599E-05 -2.1915 -0.0009319 -2.129 -0.0009053 425.22619661373665 142.81 0.52672 137.79 137.58 138.11 -5.0261 33 14 3 0 0 0 0.77935 1 27510 27510 5.2307 0 1 6858100 31307 716 20821 20835 30909 30909 0.008935403176110412 NGLLDGETAYF 11 Unmodified _NGLLDGETAYF_ 0 0 0 tr|U7SSY1|U7SSY1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01638PE=4SV=1 tr|U7SSY1|U7SSY1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01638PE=4SV=1 tr|U7SSY1|U7SSY1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01638PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2833862304688 2 600.282586 1198.55062 0.25836 0.00015509 0.25216 0.00015136 0.51051 0.00030645 600.2826378106407 89.232 0.91474 89.232 88.788 89.703 0 94 25 5 0 0 0 0.53231 1 17410 17410 21.537 9.0054 1 76132000 31308 26117 20822 20836 30910 30910 -0.04071489835769171 NGLVLLLLRL 10 Unmodified _NGLVLLLLRL_ 0 0 0 REV__ENST00000571914.1_1_17:79604263-79604362:+|nuORF REV__ENST00000571914.1_1_17:79604263-79604362:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.25732421875 3 375.256898 1122.74886 NaN NaN NaN NaN NaN NaN NaN 126.46 1 121.84 121.34 122.34 -4.6172 0 0 0 0.22588 1 24933 24933 0.62683 0.48693 1 + 31309 23170 20823 20837 30911 30911 0.1924002060454768 NGMIFIFS 8 Unmodified _NGMIFIFS_ 0 0 0 REV__ENSG00000198934|ENST00000361470|MAGEE1 REV__ENSG00000198934|ENST00000361470|MAGEE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 464.734375 2 464.733489 927.452425 NaN NaN NaN NaN NaN NaN NaN 146.02 1 141.34 140.84 141.84 -4.6868 0 0 0 0.22636 1 28957 28957 6.1918 0 1 + 31310 19486 20824 20838 30912 30912 -0.014203448946432218 NGNKHCVF 8 Unmodified _NGNKHCVF_ 0 0 0 GIMAP8|p.F591Lfs*24|1|0.17|ENSG00000171115|chr7:150477551-150477551|T/-|frameshift_variant;ENSG00000171115|ENST00000307271|GIMAP8 GIMAP8|p.F591Lfs*24|1|0.17|ENSG00000171115|chr7:150477551-150477551|T/-|frameshift_variant GIMAP8|p.F591Lfs*24|1|0.17|ENSG00000171115|chr7:150477551-150477551|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2265625 2 459.716162 917.41777 0.51296 0.00023582 -1.4509 -0.00066699 -0.93791 -0.00043117 459.71554807957483 44.476 0.58297 44.476 44.09 44.673 0 24 16 2 0 0 0 0.95284 1 8335 8335 9.3474 0 1 1495300 31311 6123 20825 20839 30913 30913 -0.04424167982745075 NGPGQDDPED 10 Unmodified _NGPGQDDPED_ 0 0 0 ENSG00000104529|ENST00000618139|EEF1D ENSG00000104529|ENST00000618139|EEF1D ENSG00000104529|ENST00000618139|EEF1D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.278564453125 2 522.19925 1042.38395 NaN NaN NaN NaN NaN NaN NaN 55.411 1 52.527 52.027 53.027 -2.8837 0 0 0 0.22588 1 10603 10603 8.1555 2.9249 1 31312 2242 20826 20840 30914 30914 -0.13554962731473097 NGPVGAVR 8 Unmodified _NGPVGAVR_ 0 0 0 ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 385.1755676269531 2 385.219395 768.424236 NaN NaN NaN NaN NaN NaN NaN 110.37 1 106 105.5 106.5 -4.3776 0 0 0 0.23664 1 21756 21756 3.2813 0 1 31313 4140 20827 20841 30915 30915 0.03076093240292721 NGRGGGGG 8 Unmodified _NGRGGGGG_ 0 0 0 nc|ENSG00000100523|Q8NEL9-2|DDHD1;nc|ENSG00000100523|Q8NEL9-4|DDHD1;ENSG00000100523|ENST00000673822|DDHD1 nc|ENSG00000100523|Q8NEL9-2|DDHD1 nc|ENSG00000100523|Q8NEL9-2|DDHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7516479492188 1 631.290662 630.283386 0.39369 0.00024853 1.1273 0.00071162 1.5209 0.00096016 631.2881351553134 155.23 0.17694 149.95 149.86 150.03 -5.2854 7 4 2 0 0 0 1.0282 1 30109 30109 0 0 1 797000 31314 1987 20828 20842 30916 30916 -0.04654485413129805 NGRIKKVTR 9 Unmodified _NGRIKKVTR_ 0 0 0 REV__ENSG00000249115|ENST00000203166|HAUS5 REV__ENSG00000249115|ENST00000203166|HAUS5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.558837890625 3 357.896363 1070.66726 -0.56507 -0.00020224 -2.5436 -0.00091034 -3.1087 -0.0011126 357.8954603570221 39.877 0.63058 37.387 36.983 37.614 -2.4896 32 17 2 0 0 0 0.64253 1 7057 7057 2.4985 1.8717 1 2136400 + 31315 19819 20829 20843 30917 30917 0.13475337965292056 NGSHEGGA 8 Unmodified _NGSHEGGA_ 0 0 0 REV__ENST00000492010.1_1_3:137831325-137834470:-|nuORF REV__ENST00000492010.1_1_3:137831325-137834470:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 364.8481140136719 2 364.651542 727.28853 NaN NaN NaN NaN NaN NaN NaN 28.642 1 26.886 26.386 27.386 -1.7552 0 0 0 0.23899 1 4845 4845 1.3295 0.36726 1 + 31316 22328 20830 20844 30918 30918 -0.08602226341179176 NGTGLISQPPP 11 Unmodified _NGTGLISQPPP_ 0 0 0 REV__ENST00000427455.1_2_7:35734065-35734469:-|nuORF REV__ENST00000427455.1_2_7:35734065-35734469:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26513671875 2 540.787838 1079.56112 0.33244 0.00017978 -0.19082 -0.0001032 0.14162 7.6584E-05 540.7879701446564 36.981 0.35676 34.644 34.417 34.774 -2.3375 14 9 2 0 0 0 0.5544 1 6525 6525 20.415 2.2682 1 466020 + 31317 20490 20831 20845 30919 30919 0.024525376093379236 NGTGLISQPPP 11 Unmodified _NGTGLISQPPP_ 0 0 0 REV__ENST00000427455.1_2_7:35734065-35734469:-|nuORF REV__ENST00000427455.1_2_7:35734065-35734469:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.787838 1079.56112 0.28586 0.00015459 0.67396 0.00036447 0.95982 0.00051906 540.7879815339265 34.707 0.20825 34.707 34.517 34.725 0 0.047912 0.00052866 NaN 20.415 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 522470 + 31318 20490 20831 20845 0.024525376093379236 NGTGLISQPPP 11 Unmodified _NGTGLISQPPP_ 0 0 0 REV__ENST00000427455.1_2_7:35734065-35734469:-|nuORF REV__ENST00000427455.1_2_7:35734065-35734469:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.787838 1079.56112 -0.19609 -0.00010605 1.0714 0.00057941 0.87532 0.00047336 540.7881948712403 37.102 0.4107 34.633 34.431 34.841 -2.4688 -0.026609 0.00095854 NaN 20.415 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 641010 + 31319 20490 20831 20845 0.024525376093379236 NGVMQTPVT 9 Unmodified _NGVMQTPVT_ 0 0 0 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10 MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1602478027344 3 316.160265 945.458967 NaN NaN NaN NaN NaN NaN NaN 97.195 1 92.96 92.46 93.46 -4.2348 0 0 0 0.23508 1 18563 18563 1.0715 0 1 31320 1579 20832 20846 30920 30920 -0.015944517339107733 NGWFGLFQL 9 Unmodified _NGWFGLFQL_ 0 0 0 REV__ENSG00000167207|ENST00000647318|NOD2 REV__ENSG00000167207|ENST00000647318|NOD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2783203125 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 136.94 1 132.02 131.52 132.52 -4.9216 0 0 0 0.17505 1 26323 26323 4.7159 0 1 + 31321 17909 20833 20847 30921 30921 0.0022177765142714634 NGYGVLLVAH 10 Unmodified _NGYGVLLVAH_ 0 0 0 REV__ENST00000527141.5_1_11:66331945-66334941:-|nuORF REV__ENST00000527141.5_1_11:66331945-66334941:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2802124023438 2 521.787641 1041.56073 0.70624 0.00036851 1.4891 0.00077701 2.1954 0.0011455 521.7883586927564 109.37 0.74484 105.19 104.83 105.58 -4.1826 28 20 2 0 0 0 0.6817 1 21050 21050 13.042 5.7532 1 1461600 + 31322 18391 20834 20848 30922 30922 0.04161162680134112 NGYTSRWY 8 Unmodified _NGYTSRWY_ 0 0 0 KDM1B|p.E545Gfs*8|1|0.11|ENSG00000165097|chr6:18217825-18217826|-/G|frameshift_variant;ENSG00000165097|ENST00000650836|KDM1B;KDM1B|p.I116Yfs*48|1|0.14|ENSG00000165097|chr6:18166301-18166301|A/-|frameshift_variant;nc|ENSG00000165097|Q8NB78-2|KDM1B KDM1B|p.E545Gfs*8|1|0.11|ENSG00000165097|chr6:18217825-18217826|-/G|frameshift_variant KDM1B|p.E545Gfs*8|1|0.11|ENSG00000165097|chr6:18217825-18217826|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6903076171875 2 523.738148 1045.46174 NaN NaN NaN NaN NaN NaN NaN 59.277 1 56.059 55.559 56.559 -3.2173 0 0 0 0.21486 1 11069 11069 12.532 1.732 1 31323 5595 20835 20849 30923 30923 -0.0591686028476488 NHADEVWP 8 Unmodified _NHADEVWP_ 0 0 0 ENSG00000133878|ENST00000256261|DUSP26 ENSG00000133878|ENST00000256261|DUSP26 ENSG00000133878|ENST00000256261|DUSP26 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1484375 3 323.147125 966.419545 NaN NaN NaN NaN NaN NaN NaN 97.629 1 93.709 93.209 94.209 -3.9194 0 0 0 0.21486 1 18737 18737 0.40072 0 1 31324 3820 20836 20850 30924 30924 -0.06500835693145746 NHADEVWP 8 Unmodified _NHADEVWP_ 0 0 0 ENSG00000133878|ENST00000256261|DUSP26 ENSG00000133878|ENST00000256261|DUSP26 ENSG00000133878|ENST00000256261|DUSP26 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1301574707031 3 323.147125 966.419545 NaN NaN NaN NaN NaN NaN NaN 97.836 1 93.917 93.417 94.417 -3.9194 0 0 0 0.21486 1 18779 18779 0.40072 0 1 31325 3820 20836 20850 30925 30925 -0.06500835693145746 NHADEVWP 8 Unmodified _NHADEVWP_ 0 0 0 ENSG00000133878|ENST00000256261|DUSP26 ENSG00000133878|ENST00000256261|DUSP26 ENSG00000133878|ENST00000256261|DUSP26 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.14794921875 3 323.147125 966.419545 NaN NaN NaN NaN NaN NaN NaN 98.802 1 94.845 94.345 95.345 -3.9564 0 0 0 0.21486 1 18964 18964 0.40072 0 1 31326 3820 20836 20850 30926 30926 -0.06500835693145746 NHAFLLSN 8 Unmodified _NHAFLLSN_ 0 0 0 ENST00000423620.6_1_8:95718261-95718693:+|nuORF ENST00000423620.6_1_8:95718261-95718693:+|nuORF ENST00000423620.6_1_8:95718261-95718693:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24127197265625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 47.665 1 44.723 44.223 45.223 -2.9421 0 0 0 0.20294 1 8695 8695 23.148 0 1 31327 9692 20837 20851 30927 30927 0.0003634506618936939 NHAFLLSN 8 Unmodified _NHAFLLSN_ 0 0 0 ENST00000423620.6_1_8:95718261-95718693:+|nuORF ENST00000423620.6_1_8:95718261-95718693:+|nuORF ENST00000423620.6_1_8:95718261-95718693:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2392578125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 47.456 1 44.506 44.006 45.006 -2.9499 0 0 0 0.19954 1 8664 8664 24.674 2.9272 1 31328 9692 20837 20851 30928 30928 0.0003634506618936939 NHAFLLSN 8 Unmodified _NHAFLLSN_ 0 0 0 ENST00000423620.6_1_8:95718261-95718693:+|nuORF ENST00000423620.6_1_8:95718261-95718693:+|nuORF ENST00000423620.6_1_8:95718261-95718693:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2390441894531 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 47.676 1 44.726 44.226 45.226 -2.9499 0 0 0 0.19954 1 8710 8710 24.674 1.5255 1 31329 9692 20837 20851 30929 30929 0.0003634506618936939 NHAPDILAKS 10 Unmodified _NHAPDILAKS_ 0 0 0 ENST00000483772.1_1_13:52538956-52548098:-|nuORF;nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B ENST00000483772.1_1_13:52538956-52548098:-|nuORF ENST00000483772.1_1_13:52538956-52548098:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 356.0748596191406 3 355.861096 1064.56146 -0.36057 -0.00012831 0.66316 0.00023599 0.30258 0.00010768 355.86129318569675 15.746 0.72803 15.746 15.401 16.129 0 50 20 3 0 0 0 0.91149 1 2408 2408 1.7423 0.67081 1 2611900 31330 3256 20838 20852 30930 30930 0.03175957329199264 NHAPDILAKS 10 Unmodified _NHAPDILAKS_ 0 0 0 ENST00000483772.1_1_13:52538956-52548098:-|nuORF;nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B ENST00000483772.1_1_13:52538956-52548098:-|nuORF ENST00000483772.1_1_13:52538956-52548098:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 355.861096 1064.56146 -0.60683 -0.00021595 0.73515 0.00026161 0.12832 4.5664E-05 355.86130403805373 16.726 0.69682 15.51 15.285 15.982 -1.2159 -0.093892 7.3598E-05 NaN 1.7423 40 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1335900 31331 3256 20838 20852 0.03175957329199264 NHAPDILAKS 10 Unmodified _NHAPDILAKS_ 0 0 0 ENST00000483772.1_1_13:52538956-52548098:-|nuORF;nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B ENST00000483772.1_1_13:52538956-52548098:-|nuORF ENST00000483772.1_1_13:52538956-52548098:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 355.861096 1064.56146 -0.48072 -0.00017107 0.58956 0.0002098 0.10885 3.8734E-05 355.8613028930668 16.828 0.69181 15.556 15.246 15.938 -1.2722 -0.047864 -8.1829E-05 NaN 1.7423 40 19 3 NaN NaN NaN NaN 0 NaN NaN 0 821790 31332 3256 20838 20852 0.03175957329199264 NHCIGHIE 8 Unmodified _NHCIGHIE_ 0 0 0 ENST00000554699.1_1_14:20919446-20922842:-|nuORF;ENSG00000092094|ENST00000206542|OSGEP ENST00000554699.1_1_14:20919446-20922842:-|nuORF ENST00000554699.1_1_14:20919446-20922842:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5320739746094 2 461.713619 921.412685 NaN NaN NaN NaN NaN NaN NaN 22.873 1 21.084 20.584 21.584 -1.7886 0 0 0 0.2396 1 3652 3652 0.12286 0 1 31333 1824 20839 20853 30931 30931 -0.05116471845349224 NHEPQCET 8 Unmodified _NHEPQCET_ 0 0 0 ENST00000454592.5_1_7:77538159-77567164:+|nuORF;nc|ENSG00000006576|Q8N3S3-6|PHTF2;nc|ENSG00000006576|Q8N3S3-5|PHTF2;nc|ENSG00000006576|Q8N3S3-7|PHTF2;PHTF2|p.L570Ffs*10|1|0.25|ENSG00000006576|chr7:77940263-77940264|-/T|frameshift_variant;nc|ENSG00000006576|Q8N3S3-4|PHTF2;PHTF2|p.K694Nfs*13|1|0.06|ENSG00000006576|chr7:77949795-77949795|A/-|frameshift_variant;PHTF2|p.K719Rfs*4|1|0.07|ENSG00000006576|chr7:77951653-77951653|A/-|frameshift_variant;nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2 ENST00000454592.5_1_7:77538159-77567164:+|nuORF ENST00000454592.5_1_7:77538159-77567164:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73760986328125 2 479.190174 956.365795 NaN NaN NaN NaN NaN NaN NaN 88.824 1 85.032 84.532 85.532 -3.7926 0 0 0 0.2343 1 17378 17378 0.0082765 0 1 31334 1009 20840 20854 30932 30932 -0.1141337618715852 NHFVTNIAQ 9 Unmodified _NHFVTNIAQ_ 0 0 0 ENST00000327906.7_1_3:52453897-52455742:+|nuORF;PHF7|p.F134Lfs*85|1|0.21|ENSG00000010318|chr3:52420419-52420419|T/-|frameshift_variant ENST00000327906.7_1_3:52453897-52455742:+|nuORF ENST00000327906.7_1_3:52453897-52455742:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2661743164062 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 22.416 1 20.942 20.442 21.442 -1.4742 0 0 0 0.23508 1 3828 3828 9.3831 0.63772 1 31335 8750 20841 20855 30933 30933 3.4016406289083534E-05 NHHASPEE 8 Unmodified _NHHASPEE_ 0 0 0 REV__nc|ENSG00000177640|Q6XLA1|CASC2 REV__nc|ENSG00000177640|Q6XLA1|CASC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2327880859375 2 460.696481 919.378408 -0.1625 -7.4863E-05 0.58124 0.00026778 0.41874 0.00019291 460.69671325625217 114.2 0.91608 109.73 109.27 110.18 -4.4726 34 25 2 0 0 0 0.77935 1 22426 22426 5.2307 0 1 1239300 + 31336 24187 20842 20856 30934 30934 -0.08450596732609483 NHHLWQKM 8 Unmodified _NHHLWQKM_ 0 0 0 ENST00000518076.1_1_8:33247301-33311025:-|nuORF ENST00000518076.1_1_8:33247301-33311025:-|nuORF ENST00000518076.1_1_8:33247301-33311025:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7924194335938 2 547.271635 1092.52872 0.75889 0.00041532 -0.59509 -0.00032568 0.1638 8.9641E-05 547.2715444587942 79.833 0.35088 79.833 79.651 80.002 0 19 9 3 0 0 0 0.71273 1 15545 15545 12.532 2.4576 1 1067400 31337 10803 20843 20857 30935 30935 -0.01384528274661534 NHIILQFPLYW 11 Unmodified _NHIILQFPLYW_ 0 0 0 tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77740478515625 3 481.930962 1442.77106 NaN NaN NaN NaN NaN NaN NaN 147.99 1 143.28 142.78 143.78 -4.7095 0 0 0 0.22632 1 29380 29380 0.026206 0 1 31338 26411 20844 20858 30936 30936 0.06738200282325124 NHIKEKYY 8 Unmodified _NHIKEKYY_ 0 0 0 tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1 tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1 tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7723999023438 2 547.785099 1093.55564 0.25788 0.00014126 -1.5605 -0.00085485 -1.3027 -0.00071358 547.783438519127 88.182 0.44977 84.432 84.189 84.639 -3.7501 18 12 2 0 0 0 8448 2 16883 16883;16888 3.5871 0 1 972700 31339 25905 20845 20859 30937;30938 30937 0.012608588175226032 NHILTLMS 8 Unmodified _NHILTLMS_ 0 0 0 ENSG00000134917|ENST00000257359|ADAMTS8 ENSG00000134917|ENST00000257359|ADAMTS8 ENSG00000134917|ENST00000257359|ADAMTS8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16998291015625 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 173.83 1 173.83 173.33 174.33 0 0 0 0 0.21486 1 35962 35962 0.40072 0 1 31340 3885 20846 20860 30939 30939 0.018144425083619353 NHKRHNVY 8 Unmodified _NHKRHNVY_ 0 0 0 REV__ENSG00000126351|ENST00000450525|THRA REV__ENSG00000126351|ENST00000450525|THRA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 356.0748596191406 3 356.521296 1066.54206 -0.35945 -0.00012815 0.43712 0.00015584 0.077678 2.7694E-05 356.5210442246654 15.59 0.72807 15.59 15.227 15.955 0 34 20 2 0 0 0 1.0265 1 2408 2408 1.6526 0 1 795610 + 31341 15854 20847 20861 30940 30940 0.011450458289573362 NHLFLLIQWWV 11 Unmodified _NHLFLLIQWWV_ 0 0 0 REV__nc|ENSG00000104081|Q96LC9-2|BMF REV__nc|ENSG00000104081|Q96LC9-2|BMF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2652893066406 3 490.27484 1467.80269 NaN NaN NaN NaN NaN NaN NaN 154.26 1 149.04 148.54 149.54 -5.2209 0 0 0 0.22632 1 29906 29906 0.026206 0 1 + 31342 14904 20848 20862 30941 30941 0.0875019303625777 NHPIYLAT 8 Unmodified _NHPIYLAT_ 0 0 0 ENST00000503058.5_1_4:83800070-83812260:-|nuORF;ENST00000507867.5_1_4:83798919-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;SEC31A|p.K616Nfs*18|1|0.26|ENSG00000138674|chr4:82856985-82856985|T/-|frameshift_variant;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;SEC31A|p.P1058Qfs*62|1|0.4|ENSG00000138674|chr4:82827487-82827487|G/-|frameshift_variant;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A ENST00000503058.5_1_4:83800070-83812260:-|nuORF ENST00000503058.5_1_4:83800070-83812260:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2505187988281 2 464.747985 927.481417 0.019217 8.9312E-06 -2.7405 -0.0012737 -2.7213 -0.0012647 464.74575053579446 42.233 0.8832 39.627 38.98 39.863 -2.606 51 24 3 0 0 0 0.68128 1 7487 7487 16.942 1.0951 1 4717600 31343 4199 20849 20863 30942 30942 0.01477515725991907 NHSHNYFYY 9 Unmodified _NHSHNYFYY_ 0 0 0 REV__NUFIP2|p.H35Y|1|0.47|ENSG00000108256|chr17:29293957-29293957|G/A|missense_variant REV__NUFIP2|p.H35Y|1|0.47|ENSG00000108256|chr17:29293957-29293957|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7584228515625 2 622.759612 1243.50467 NaN NaN NaN NaN NaN NaN NaN 28.92 1 26.964 26.464 27.464 -1.9561 0 0 0 0.19626 1 5189 5189 0.0033805 0 1 + 31344 15111 20850 20864 30943 30943 -0.10734090227333581 NHTASSSLY 9 Unmodified _NHTASSSLY_ 0 0 0 REV__OR7A10|p.A263S|1|0.22|ENSG00000127515|chr19:14841091-14841091|C/A|missense_variant REV__OR7A10|p.A263S|1|0.22|ENSG00000127515|chr19:14841091-14841091|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2644348144531 2 490.227613 978.440674 -0.03573 -1.7516E-05 -0.035553 -1.7429E-05 -0.071283 -3.4945E-05 490.22757605288115 50.734 3.179 47.851 46.413 49.592 -2.8824 144 90 2 0 0 0 0.26282 1 9768 9768 7.4771 6.6321 1 3563900 + 31345 24416 20851 20865 30944 30944 -0.049408703842800605 NHTGLRPSY 9 Unmodified _NHTGLRPSY_ 0 0 0 ENST00000302754.5_1_19:12903662-12904103:+|nuORF ENST00000302754.5_1_19:12903662-12904103:+|nuORF ENST00000302754.5_1_19:12903662-12904103:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2802124023438 2 522.764697 1043.51484 0.013727 7.1758E-06 -0.034941 -1.8266E-05 -0.021214 -1.109E-05 522.7640204766133 84.086 0.70539 80.375 80.097 80.802 -3.7117 43 19 3 0 0 0 0.81703 1 16137 16137 14.838 6.9281 1 3199500 31346 8576 20852 20866 30945 30945 -0.005174825020958451 NIDELFKLIV 10 Unmodified _NIDELFKLIV_ 0 0 0 tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1 tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1 tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.300537109375 2 602.352814 1202.69108 NaN NaN NaN NaN NaN NaN NaN 95.63 1 91.749 91.249 92.249 -3.881 0 0 0 0.22588 1 18350 18350 6.2058 0 1 31347 26235 20853 20867 30946 30946 0.09783713888464263 NIDETEKIFA 10 Unmodified _NIDETEKIFA_ 0 0 0 REV__ENSG00000006704|ENST00000424337|GTF2IRD1 REV__ENSG00000006704|ENST00000424337|GTF2IRD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2574462890625 2 590.298236 1178.58192 NaN NaN NaN NaN NaN NaN NaN 155.56 1 150.78 150.28 151.28 -4.7791 0 0 0 0.22588 1 30922 30922 6.7232 0.51738 1 + 31348 13878 20854 20868 30947 30947 -0.00022916801663086517 NIDSVFHSYIN 11 Unmodified _NIDSVFHSYIN_ 0 0 0 ENST00000433288.2_1_1:151922871-151923141:-|nuORF ENST00000433288.2_1_1:151922871-151923141:-|nuORF ENST00000433288.2_1_1:151922871-151923141:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2160949707031 3 436.878815 1307.61462 0.45654 0.00019945 3.4886 0.0015241 3.9451 0.0017235 436.87932896088336 110.3 0.44927 106.12 105.82 106.27 -4.1826 20 12 2 0 0 0 0.79645 1 21204 21204 4.1166 0.79699 1 502280 31349 9808 20855 20869 30948 30948 -0.026887096787731934 NIDVPNVEF 9 Unmodified _NIDVPNVEF_ 0 0 0 nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENSG00000048342|ENST00000424120|CC2D2A nc|ENSG00000048342|Q9P2K1-2|CC2D2A nc|ENSG00000048342|Q9P2K1-2|CC2D2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.685546875 2 523.761289 1045.50803 NaN NaN NaN NaN NaN NaN NaN 158.13 1 153.34 152.84 153.84 -4.7952 0 0 0 0.22519 1 31444 31444 16.149 0 1 31350 1226 20856 20870 30949 30949 -0.01290840173351171 NIEALAILV 9 Unmodified _NIEALAILV_ 0 0 0 ENSG00000100652|ENST00000216540|SLC10A1 ENSG00000100652|ENST00000216540|SLC10A1 ENSG00000100652|ENST00000216540|SLC10A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72607421875 2 478.294768 954.574983 0.16926 8.0955E-05 -0.31888 -0.00015252 -0.14962 -7.1563E-05 478.2945142482352 159.09 0.4317 153.81 153.68 154.11 -5.2748 17 11 2 0 0 0 0.25976 1 30920 30920 17.113 8.9574 1 1096300 31351 2003 20857 20871 30950 30950 0.09587815108420727 NIEAQYRQG 9 Unmodified _NIEAQYRQG_ 0 0 0 REV__ENST00000494348.1_1_19:7974966-7975513:+|nuORF REV__ENST00000494348.1_1_19:7974966-7975513:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2008361816406 3 360.180717 1077.52032 NaN NaN NaN NaN NaN NaN NaN 22.949 1 21.16 20.66 21.66 -1.7886 0 0 0 0.23508 1 3668 3668 2.2828 0.3764 1 + 31352 14355 20858 20872 30951 30951 -0.01533803710299253 NIEHEPLRS 9 Unmodified _NIEHEPLRS_ 0 0 0 REV__ENSG00000115808|ENST00000263918|STRN REV__ENSG00000115808|ENST00000263918|STRN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7859497070312 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 145.35 1 140.28 139.78 140.78 -5.0671 0 0 0 0.23508 1 28084 28084 8.7454 1.4562 1 + 31353 15450 20859 20873 30952 30952 0.008587693238041538 NIEIKFMFY 9 Unmodified _NIEIKFMFY_ 0 0 0 REV__ENST00000529186.1_1_11:44129577-44137613:+|nuORF REV__ENST00000529186.1_1_11:44129577-44137613:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2755737304688 2 602.807185 1203.59982 0.085828 5.1738E-05 -1.3107 -0.00079012 -1.2249 -0.00073838 602.8065007669459 59.853 0.3813 59.853 59.683 60.065 0 15 10 2 0 0 0 0.87511 1 11443 11443 3.9444 0.3479 1 1878700 + 31354 22735 20860 20874 30953 30953 0.006161269194990382 NIEKDIAAHI 10 Unmodified _NIEKDIAAHI_ 0 0 0 ENSG00000088986|ENST00000242577|DYNLL1 ENSG00000088986|ENST00000242577|DYNLL1 ENSG00000088986|ENST00000242577|DYNLL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2086486816406 3 375.208384 1122.60332 -0.42428 -0.00015919 0.59826 0.00022447 0.17398 6.5278E-05 375.2086345148117 52.366 0.35032 49.484 49.308 49.658 -2.8824 16 9 2 0 0 0 0.53029 1 9991 9991 0.01381 0 1 1154000 31355 1743 20861 20875 30954 30954 0.04692513017721467 NIFGTADISQ 10 Unmodified _NIFGTADISQ_ 0 0 0 REV__ENST00000513426.1_1_5:53156036-53156228:+|nuORF REV__ENST00000513426.1_1_5:53156036-53156228:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2620849609375 2 533.264196 1064.51384 0.22608 0.00012056 -0.35344 -0.00018848 -0.12736 -6.7917E-05 533.2639106493723 130.16 1.0548 125.38 124.75 125.8 -4.7725 59 28 3 0 0 0 0.72406 1 24933 24933 8.7454 8.7454 1 5610100 + 31356 22569 20862 20876 30955 30955 -0.015837416616705013 NIFLYFVSFYR 11 Unmodified _NIFLYFVSFYR_ 0 0 0 REV__SLC15A2|p.S190F|1|0.24|ENSG00000163406|chr3:121915267-121915267|C/T|missense_variant REV__SLC15A2|p.S190F|1|0.24|ENSG00000163406|chr3:121915267-121915267|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25762939453125 3 490.258967 1467.75507 NaN NaN NaN NaN NaN NaN NaN 20.017 1 20.017 19.517 20.517 0 0 0 0 0.22632 1 3296 3296 0.026206 0 1 + 31357 24625 20863 20877 30956 30956 0.03990494045410742 NIFRKYREQRL 11 Unmodified _NIFRKYREQRL_ 0 0 0 REV__nc|ENSG00000198881|Q8WXK4|ASB12 REV__nc|ENSG00000198881|Q8WXK4|ASB12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 761.9008178710938 2 761.933691 1521.85283 NaN NaN NaN NaN NaN NaN NaN 167.53 1 162.74 162.24 163.24 -4.7898 0 0 0 0.23698 1 33794 33794 1.3295 0 1 + 31358 19472 20864 20878 30957 30957 0.11277695694116119 NIHERRSKRRK 11 Unmodified _NIHERRSKRRK_ 0 0 0 SCN5A|p.S471I|1|0.4|ENSG00000183873|chr3:38604835-38604835|C/A|missense_variant SCN5A|p.S471I|1|0.4|ENSG00000183873|chr3:38604835-38604835|C/A|missense_variant SCN5A|p.S471I|1|0.4|ENSG00000183873|chr3:38604835-38604835|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 493.9630432128906 3 493.96243 1478.86546 NaN NaN NaN NaN NaN NaN NaN 168.69 1 163.76 163.26 164.26 -4.9295 0 0 0 0.22632 1 33269 33269 0.0072825 0.0072825 1 31359 25643 20865 20879 30958 30958 0.14518151876995944 NIHPKSNF 8 Unmodified _NIHPKSNF_ 0 0 0 REV__ENSG00000165494|ENST00000690938|PCF11 REV__ENSG00000165494|ENST00000690938|PCF11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7247314453125 2 478.751059 955.487565 -0.40049 -0.00019173 1.4835 0.00071023 1.083 0.0005185 478.751237274445 68.277 0.43457 68.277 67.998 68.432 0 16 11 2 0 0 0 0.69713 1 13161 13161 14.838 2.3067 1 1220800 + 31360 17775 20866 20880 30959 30959 0.008040339575245525 NIHRTLGPSSY 11 Unmodified _NIHRTLGPSSY_ 0 0 0 REV__ENSG00000173404|ENST00000310227|INSM1 REV__ENSG00000173404|ENST00000310227|INSM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.775634765625 2 622.822744 1243.63093 NaN NaN NaN NaN NaN NaN NaN 109.95 1 105.57 105.07 106.07 -4.3776 0 0 0 0.22943 1 21669 21669 8.7454 0 1 + 31361 18353 20867 20881 30960 30960 0.018864162779664184 NIIATSPVD 9 Unmodified _NIIATSPVD_ 0 0 0 ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1;ASTN1|p.L945Pfs*9|1|0.49|ENSG00000152092|chr1:176894668-176894669|-/G|frameshift_variant;nc|ENSG00000152092|O14525-3|ASTN1;ENST00000281881.7_1_1:176905297-177133812:-|nuORF;ENST00000473640.1_1_1:176992565-177001685:-|nuORF ENSG00000152092|ENST00000361833|ASTN1 ENSG00000152092|ENST00000361833|ASTN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2492980957031 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 127.36 1 122.66 122.16 123.16 -4.6998 0 0 0 0.23508 1 24497 24497 11.64 1.4569 1 31362 4901 20868 20882 30961 30961 0.019457747979686246 NIIEECNEN 9 Unmodified _NIIEECNEN_ 0 0 0 REV__MAP7|p.F692C|1|0.38|ENSG00000135525|chr6:136346020-136346020|A/C|missense_variant REV__MAP7|p.F692C|1|0.38|ENSG00000135525|chr6:136346020-136346020|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015686035156 3 359.822089 1076.44444 -0.61226 -0.0002203 -1.0319 -0.0003713 -1.6441 -0.0005916 359.82181317698064 110.63 0.65681 106.2 105.88 106.54 -4.4231 39 18 3 0 0 0 0.85359 1 21827 21827 7.609 5.1105 1 3158900 + 31363 23833 20869 20883 30962 30962 -0.09072568672741 NIIEECNEN 9 Unmodified _NIIEECNEN_ 0 0 0 REV__MAP7|p.F692C|1|0.38|ENSG00000135525|chr6:136346020-136346020|A/C|missense_variant REV__MAP7|p.F692C|1|0.38|ENSG00000135525|chr6:136346020-136346020|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20147705078125 3 359.822089 1076.44444 -0.14359 -5.1668E-05 -0.94993 -0.00034181 -1.0935 -0.00039348 359.82173295291284 110.75 0.68002 106.25 105.96 106.64 -4.4915 31 18 3 0 0 0 0.87609 1 21235 21235 7.609 5.1105 1 1575600 + 31364 23833 20869 20883 30963 30963 -0.09072568672741 NIIEECNEN 9 Unmodified _NIIEECNEN_ 0 0 0 REV__MAP7|p.F692C|1|0.38|ENSG00000135525|chr6:136346020-136346020|A/C|missense_variant REV__MAP7|p.F692C|1|0.38|ENSG00000135525|chr6:136346020-136346020|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20135498046875 3 359.822089 1076.44444 -0.055199 -1.9862E-05 -1.0814 -0.00038913 -1.1366 -0.00040899 359.82164533878137 110.46 0.66744 106.23 105.88 106.55 -4.2289 36 18 3 0 0 0 0.85359 1 21227 21227 7.609 3.4194 1 2621800 + 31365 23833 20869 20883 30964 30964 -0.09072568672741 NIIFYDQWRWE 11 Unmodified _NIIFYDQWRWE_ 0 0 0 REV__ENST00000370214.8_1_1:94965144-94982653:+|nuORF REV__ENST00000370214.8_1_1:94965144-94982653:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3768920898438 2 785.377883 1568.74121 NaN NaN NaN NaN NaN NaN NaN 167.57 1 167.57 167.07 168.07 0 0 0 0 0.23324 1 34252 34252 5.7319 0.43497 1 + 31366 20974 20870 20884 30965 30965 -0.020407834537081726 NIIHKPTRF 9 Unmodified _NIIHKPTRF_ 0 0 0 REV__tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1 REV__tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.8907165527344 3 375.889097 1124.64546 NaN NaN NaN NaN NaN NaN NaN 17.994 1 17.994 17.494 18.494 0 0 0 0 0.19651 1 2873 2873 0.029283 0 1 + 31367 25014 20871 20885 30966 30966 0.08812533216746488 NIIPRFVQV 9 Unmodified _NIIPRFVQV_ 0 0 0 nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;SRGAP2|p.P339Lfs*2|1|0.24|ENSG00000266028|chr1:206401603-206401603|C/-|frameshift_variant;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant nc|ENSG00000196369|P0DMP2|SRGAP2B;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7905883789062 2 543.326934 1084.63931 0.34117 0.00018536 0.11845 6.436E-05 0.45962 0.00024972 543.326688953691 151.98 0.68452 151.98 151.58 152.27 0 27 18 2 0 0 0 0.066709 1 30432 30432 31.728 27.07 1 2802200 31368 7981;7261 20872 20886 30967 30967 0.10038014985207155 NIIPRFVQV 9 Unmodified _NIIPRFVQV_ 0 0 0 nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;SRGAP2|p.P339Lfs*2|1|0.24|ENSG00000266028|chr1:206401603-206401603|C/-|frameshift_variant;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant nc|ENSG00000196369|P0DMP2|SRGAP2B;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.779541015625 2 543.326934 1084.63931 0.37786 0.0002053 -0.26371 -0.00014328 0.11416 6.2024E-05 543.3267230674285 156.56 0.64276 151.77 151.53 152.17 -4.7885 27 17 2 0 0 0 0.09143 5 31163 31116;31127;31131;31163;31204 58.679 29.597 1 2553700 31369 7981;7261 20872 20886 30968;30969;30970;30971;30972 30971 0.10038014985207155 NIIPRFVQV 9 Unmodified _NIIPRFVQV_ 0 0 0 nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;SRGAP2|p.P339Lfs*2|1|0.24|ENSG00000266028|chr1:206401603-206401603|C/-|frameshift_variant;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant nc|ENSG00000196369|P0DMP2|SRGAP2B;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7896118164062 2 543.326934 1084.63931 0.18487 0.00010044 0.032774 1.7807E-05 0.21764 0.00011825 543.3267607868544 157.31 0.76932 152.03 151.48 152.25 -5.2854 40 21 3 0 0 0 0.067773 3 30489 30485;30489;30516 65.235 28.072 1 2261500 31370 7981;7261 20872 20886 30973;30974;30975 30974 0.10038014985207155 NIIPRFVQV 9 Unmodified _NIIPRFVQV_ 0 0 0 nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;SRGAP2|p.P339Lfs*2|1|0.24|ENSG00000266028|chr1:206401603-206401603|C/-|frameshift_variant;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant nc|ENSG00000196369|P0DMP2|SRGAP2B;SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant SRGAP2|p.Q1062Tfs*4|1|0.06|ENSG00000266028|chr1:206461385-206461386|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7889404296875 2 543.326934 1084.63931 0.50205 0.00027278 -0.40061 -0.00021766 0.10144 5.5114E-05 543.3265623082817 157.13 0.70108 151.85 151.52 152.22 -5.2712 41 19 3 0 0 0 0.15889 1 30467 30467 30.703 19.804 1 1940000 31371 7981;7261 20872 20886 30976 30976 0.10038014985207155 NIIQPTVTTY 10 Unmodified _NIIQPTVTTY_ 0 0 0 REV__nc|ENSG00000130402|O43707-3|ACTN4 REV__nc|ENSG00000130402|O43707-3|ACTN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.332763671875 2 575.311146 1148.60774 0.011114 6.3941E-06 0.30532 0.00017565 0.31643 0.00018205 575.3113125216692 99.88 0.70246 95.748 95.405 96.108 -4.1326 57 19 4 0 0 0 0.664 1 19564 19564 14.838 0 1 14378000 + 31372 16003 20873 20887 30977 30977 0.039379774406370416 NIISVYYG 8 Unmodified _NIISVYYG_ 0 0 0 REV__nc|ENSG00000132376|Q9BT40-2|INPP5K REV__nc|ENSG00000132376|Q9BT40-2|INPP5K MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.165283203125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 97.505 1 93.585 93.085 94.085 -3.9194 0 0 0 0.21486 1 18711 18711 1.6526 0 1 + 31373 16111 20874 20888 30978 30978 0.00354693631857117 NIKAQQKPQP 10 Unmodified _NIKAQQKPQP_ 0 0 0 ENST00000585530.1_1_17:40091759-40093269:+|nuORF;nc|ENSG00000204815|Q96NG3-2|ODAD4;ENSG00000204815|ENST00000377540|ODAD4 ENST00000585530.1_1_17:40091759-40093269:+|nuORF ENST00000585530.1_1_17:40091759-40093269:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3292846679688 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 168.45 1 168.45 167.95 168.95 0 0 0 0 0.22583 1 34498 34498 13.906 2.4113 1 31374 7611 20875 20889 30979 30979 0.07655908145943613 NIKAQQKPQP 10 Unmodified _NIKAQQKPQP_ 0 0 0 ENST00000585530.1_1_17:40091759-40093269:+|nuORF;nc|ENSG00000204815|Q96NG3-2|ODAD4;ENSG00000204815|ENST00000377540|ODAD4 ENST00000585530.1_1_17:40091759-40093269:+|nuORF ENST00000585530.1_1_17:40091759-40093269:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3301391601562 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 169.91 1 164.98 164.48 165.48 -4.9295 0 0 0 0.22588 1 33572 33572 10.074 0.6908 1 31375 7611 20875 20889 30980 30980 0.07655908145943613 NIKKRKAKKKK 11 Unmodified _NIKKRKAKKKK_ 0 0 0 REV__ENSG00000134077|ENST00000452837|THUMPD3 REV__ENSG00000134077|ENST00000452837|THUMPD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 685.8137817382812 2 685.477537 1368.94052 NaN NaN NaN NaN NaN NaN NaN 168.57 1 163.7 163.2 164.2 -4.873 0 0 0 0.22632 1 33236 33236 0 0 1 + 31376 16193 20876 20890 30981 30981 0.27080941355507093 NIKRYGWKKQY 11 Unmodified _NIKRYGWKKQY_ 0 0 0 ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant;ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1 ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3994140625 2 742.41206 1482.80957 NaN NaN NaN NaN NaN NaN NaN 169.21 1 164.42 163.92 164.92 -4.7898 0 0 0 0.23379 1 34262 34262 5.2969 0 1 31377 1397 20877 20891 30982 30982 0.08747505916835507 NILACLLFKLP 11 Unmodified _NILACLLFKLP_ 0 0 0 ENST00000522067.1_1_1:233160928-233161282:-|nuORF ENST00000522067.1_1_1:233160928-233161282:-|nuORF ENST00000522067.1_1_1:233160928-233161282:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7600708007812 2 622.875402 1243.73625 0.22448 0.00013983 2.7778 0.0017302 3.0023 0.0018701 622.8774679604285 56.374 0.84031 56.374 55.938 56.778 0 44 23 3 0 0 0 0.75285 1 10822 10822 8.1555 1.9497 1 2426000 31378 10859 20878 20892 30983 30983 0.12413241150034082 NILECLVTG 9 Unmodified _NILECLVTG_ 0 0 0 REV__ENST00000478033.1_1_1:159889062-159890299:-|nuORF REV__ENST00000478033.1_1_1:159889062-159890299:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2548828125 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 62.727 1 59.488 58.988 59.988 -3.2395 0 0 0 0.21469 1 11762 11762 19.257 2.3147 1 + 31379 17344 20879 20893 30984 30984 0.01319005442951493 NILILLFLK 9 Unmodified _NILILLFLK_ 0 0 0 nc|ENSG00000203721|A6NCI5|LINC00862 nc|ENSG00000203721|A6NCI5|LINC00862 nc|ENSG00000203721|A6NCI5|LINC00862 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7941284179688 2 543.867903 1085.72125 NaN NaN NaN NaN NaN NaN NaN 123.48 1 123.48 122.98 123.98 0 0 0 0 0.23508 1 24341 24341 2.0598 0 1 31380 12556 20880 20894 30985 30985 0.1818211734430406 NILKKRPVN 9 Unmodified _NILKKRPVN_ 0 0 0 KLHL31|p.D105Rfs*11|1|0.26|ENSG00000124743|chr6:53654960-53654961|-/T|frameshift_variant KLHL31|p.D105Rfs*11|1|0.26|ENSG00000124743|chr6:53654960-53654961|-/T|frameshift_variant KLHL31|p.D105Rfs*11|1|0.26|ENSG00000124743|chr6:53654960-53654961|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2713623046875 2 541.345658 1080.67676 0.4542 0.00024588 -0.26326 -0.00014251 0.19094 0.00010337 541.8470524021488 39.947 0.8718 39.947 39.445 40.316 0 38 24 2 0 0 0 0.46541 1 7398 7398 21.747 1.293 1 2602300 31381 12007 20881 20895 30986 30986 0.139651062508392 NILKLVPVVT 10 Unmodified _NILKLVPVVT_ 0 0 0 tr|U7SUY0|U7SUY0_FUSNUCobalt-precorrin5AhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01047PE=4SV=1 tr|U7SUY0|U7SUY0_FUSNUCobalt-precorrin5AhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01047PE=4SV=1 tr|U7SUY0|U7SUY0_FUSNUCobalt-precorrin5AhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01047PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7886962890625 2 548.360442 1094.70633 0.32098 0.00017601 0.14714 8.0685E-05 0.46812 0.0002567 548.3614293349743 120 0.20533 120 119.87 120.07 0 7 5 2 0 0 0 0.91149 1 23646 23646 0.35063 0.081612 1 1630000 31382 26216 20882 20896 30987 30987 0.16276625476325535 NILKVIDEIF 10 Unmodified _NILKVIDEIF_ 0 0 0 REV__ENSG00000004700|ENST00000444129|RECQL REV__ENSG00000004700|ENST00000444129|RECQL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2769775390625 2 602.352814 1202.69108 NaN NaN NaN NaN NaN NaN NaN 39.852 1 37.303 36.803 37.803 -2.5491 0 0 0 0.22588 1 7413 7413 6.7232 0 1 + 31383 13838 20883 20897 30988 30988 0.09783713888441525 NINGLIIAE 9 Unmodified _NINGLIIAE_ 0 0 0 tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1 tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1 tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7294921875 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 117.41 1 117.41 116.91 117.91 0 0 0 0 0.19674 1 23127 23127 1.2148 0.588 1 31384 26461 20884 20898 30989 30989 0.054300540689382615 NIPFVLLL 8 Unmodified _NIPFVLLL_ 0 0 0 ENST00000474693.1_1_1:213037797-213058739:+|nuORF;nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1;ENSG00000162769|ENST00000366971|FLVCR1 ENST00000474693.1_1_1:213037797-213058739:+|nuORF ENST00000474693.1_1_1:213037797-213058739:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.23004150390625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 140.34 1 135.69 135.19 136.19 -4.6439 0 0 0 0.21486 1 27709 27709 0.40072 0 1 31385 5366 20885 20899 30990 30990 0.11265324322005199 NIPFVLLL 8 Unmodified _NIPFVLLL_ 0 0 0 ENST00000474693.1_1_1:213037797-213058739:+|nuORF;nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1;ENSG00000162769|ENST00000366971|FLVCR1 ENST00000474693.1_1_1:213037797-213058739:+|nuORF ENST00000474693.1_1_1:213037797-213058739:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.15972900390625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 24.746 1 22.892 22.392 23.392 -1.8534 0 0 0 0.21486 1 4038 4038 0.45834 0 1 31386 5366 20885 20899 30991 30991 0.11265324322005199 NIPFYISVL 9 Unmodified _NIPFYISVL_ 0 0 0 ENSG00000166840|ENST00000532726|GLYATL1;ENST00000534119.1_1_11:58715222-58723497:+|nuORF;nc|ENSG00000166840|Q969I3-2|GLYATL1 ENSG00000166840|ENST00000532726|GLYATL1 ENSG00000166840|ENST00000532726|GLYATL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2655639648438 2 533.302593 1064.59063 NaN NaN NaN NaN NaN NaN NaN 143.1 1 143.1 142.6 143.6 0 0 0 0 0.23508 1 28546 28546 11.64 1.5664 1 31387 5752 20886 20900 30992 30992 0.060921016254724236 NIPSIIYRLD 10 Unmodified _NIPSIIYRLD_ 0 0 0 REV__PCDH9|p.F580Lfs*14|2|0.24|ENSG00000184226|chr13:67226701-67226701|A/-|frameshift_variant REV__PCDH9|p.F580Lfs*14|2|0.24|ENSG00000184226|chr13:67226701-67226701|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.287353515625 2 602.340238 1202.66592 NaN NaN NaN NaN NaN NaN NaN 169.18 1 164.26 163.76 164.76 -4.9295 0 0 0 0.22527 1 33390 33390 21.537 2.175 1 + 31388 18886 20887 20901 30993 30993 0.07269659085909552 NIQEKIAF 8 Unmodified _NIQEKIAF_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76904296875 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 126.08 1 126.08 125.58 126.58 0 0 0 0 0.20618 1 24877 24877 20.454 0.039092 1 31389 3342 20888 20902 30994 30994 0.04098071414523474 NIQKKNTD 8 Unmodified _NIQKKNTD_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2314147949219 2 480.759081 959.503609 NaN NaN NaN NaN NaN NaN NaN 154.73 1 149.95 149.45 150.45 -4.7791 0 0 0 0.21452 1 30756 30756 13.508 5.5977 1 + 31390 15726 20889 20903 30995 30995 0.022236954037680334 NIQRHQGGR 9 Unmodified _NIQRHQGGR_ 0 0 0 nc|ENSG00000139915|Q7Z553|MDGA2;MDGA2|p.I945Lfs*8|1|0.13|ENSG00000139915|chr14:46841973-46841973|A/-|frameshift_variant;ENSG00000139915|ENST00000399232|MDGA2;MDGA2|p.L178Ffs*6|1|0.4|ENSG00000139915|chr14:47144129-47144130|-/A|frameshift_variant;MDGA2|p.S323Vfs*25|2|0.18|ENSG00000139915|chr14:47096876-47096877|-/T|frameshift_variant;MDGA2|p.G334Dfs*22|6|0.17|ENSG00000139915|chr14:47061568-47061568|T/-|frameshift_variant;MDGA2|p.S451Ifs*22|1|0.27|ENSG00000139915|chr14:47035272-47035273|-/T|frameshift_variant nc|ENSG00000139915|Q7Z553|MDGA2 nc|ENSG00000139915|Q7Z553|MDGA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2803344726562 2 533.286663 1064.55877 NaN NaN NaN NaN NaN NaN NaN 172.85 1 172.85 172.35 173.35 0 0 0 0 0.23508 1 35707 35707 7.2892 0 1 31391 4270 20890 20904 30996 30996 0.029075467149141332 NIRARRWKEM 10 Unmodified _NIRARRWKEM_ 0 0 0 REV__HES4|p.R45W|1|0.39|ENSG00000188290|chr1:999763-999763|G/A|missense_variant REV__HES4|p.R45W|1|0.39|ENSG00000188290|chr1:999763-999763|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7529602050781 3 453.919062 1358.73536 NaN NaN NaN NaN NaN NaN NaN 125.82 1 121.17 120.67 121.67 -4.6495 0 0 0 2.8426 1 24210 24210 0.043787 0 1 + 31392 23630 20891 20905 30997 30997 0.07033839553673715 NIRDCILAY 9 Unmodified _NIRDCILAY_ 0 0 0 ENST00000211936.10_1_6:27419017-27419236:-|nuORF ENST00000211936.10_1_6:27419017-27419236:-|nuORF ENST00000211936.10_1_6:27419017-27419236:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.279296875 2 540.778959 1079.54336 -0.1847 -9.988E-05 -1.4193 -0.00076753 -1.604 -0.00086741 541.2797446415681 110.12 1.4585 105.74 104.92 106.38 -4.3776 109 41 4 0 0 0 0.19311 1 21591 21591 37.974 7.3375 1 5102700 31393 8097 20892 20906 30998 30998 0.006774990828262162 NIREYKTY 8 Unmodified _NIREYKTY_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.775634765625 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 119.66 1 119.66 119.16 120.16 0 0 0 0 0.21486 1 23580 23580 9.3474 1.4373 1 + 31394 15567 20893 20907 30999 30999 0.01120554954900399 NIRKLIPKL 9 Unmodified _NIRKLIPKL_ 0 0 0 tr|U7SUE9|U7SUE9_FUSNUDCDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01210PE=4SV=1 tr|U7SUE9|U7SUE9_FUSNUDCDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01210PE=4SV=1 tr|U7SUE9|U7SUE9_FUSNUDCDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01210PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7680053710938 2 547.874051 1093.73355 NaN NaN NaN NaN NaN NaN NaN 166.8 1 161.91 161.41 162.41 -4.8916 0 0 0 0.23508 1 32722 32722 3.9444 1.8846 1 31395 26203 20894 20908 31000 31000 0.19043153807365343 NIRLFLVNY 9 Unmodified _NIRLFLVNY_ 0 0 0 GLTP|p.K179N|1|0.11|ENSG00000139433|chr12:109852648-109852648|C/A|missense_variant GLTP|p.K179N|1|0.11|ENSG00000139433|chr12:109852648-109852648|C/A|missense_variant GLTP|p.K179N|1|0.11|ENSG00000139433|chr12:109852648-109852648|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3270874023438 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 129.11 1 124.29 123.79 124.79 -4.817 0 0 0 0.23508 1 24783 24783 12.532 1.7076 1 31396 11854 20895 20909 31001 31001 0.08057997639662062 NISPDEVCQKA 11 Unmodified _NISPDEVCQKA_ 0 0 0 ENSG00000129437|ENST00000650543|KLK14;nc|ENSG00000129437|Q9P0G3|KLK14 ENSG00000129437|ENST00000650543|KLK14 ENSG00000129437|ENST00000650543|KLK14 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.289794921875 2 602.287345 1202.56014 NaN NaN NaN NaN NaN NaN NaN 168.66 1 163.79 163.29 164.29 -4.873 0 0 0 0.22683 1 33261 33261 10.8 4.0763 1 31397 3565 20896 20910 31002 31002 -0.0330404482187987 NISVSFPAE 9 Unmodified _NISVSFPAE_ 0 0 0 ENST00000519899.5_1_8:141756852-141774450:-|nuORF ENST00000519899.5_1_8:141756852-141774450:-|nuORF ENST00000519899.5_1_8:141756852-141774450:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7708435058594 2 482.242732 962.470912 0.17786 8.5772E-05 0.81976 0.00039532 0.99762 0.0004811 482.2431851020909 40.433 0.50283 40.433 40.101 40.604 0 20 13 2 0 0 0 0.65155 1 7541 7541 21.747 0 1 2243200 31398 10828 20897 20911 31003 31003 -0.01182511719082413 NISVTFLSLT 10 Unmodified _NISVTFLSLT_ 0 0 0 nc|ENSG00000119402|Q9UKT8-2|FBXW2;ENSG00000119402|ENST00000608872|FBXW2 nc|ENSG00000119402|Q9UKT8-2|FBXW2 nc|ENSG00000119402|Q9UKT8-2|FBXW2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7892456054688 2 547.808239 1093.60193 0.23143 0.00012678 2.1023 0.0011517 2.3337 0.0012784 547.8073924345268 140.64 0.21379 135.99 135.84 136.05 -4.6493 7 5 2 0 0 0 0.89697 1 27744 27744 7.609 2.8529 1 1951800 31399 3075 20898 20912 31004 31004 0.058868789289590495 NITDPEKLY 9 Unmodified _NITDPEKLY_ 0 0 0 tr|U7T3Z3|U7T3Z3_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00313PE=4SV=1 tr|U7T3Z3|U7T3Z3_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00313PE=4SV=1 tr|U7T3Z3|U7T3Z3_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00313PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7909545898438 2 546.782222 1091.54989 0.18861 0.00010313 1.5989 0.00087427 1.7875 0.0009774 546.7829102287636 86.753 0.80914 83.024 82.8 83.609 -3.7289 49 20 4 0 0 0 0.62102 1 16681 16681 11.64 1.5664 1 7762600 31400 26422 20899 20913 31005 31005 0.007777155151870829 NITKKQKW 8 Unmodified _NITKKQKW_ 0 0 0 ENSG00000132604|ENST00000254942|TERF2 ENSG00000132604|ENST00000254942|TERF2 ENSG00000132604|ENST00000254942|TERF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6876831054688 2 523.311284 1044.60801 -1.2528 -0.00065561 1.8426 0.00096425 0.58978 0.00030864 523.3127026160585 14.218 0.1765 13.045 12.931 13.107 -1.173 5 4 2 0 0 0 0.88047 1 1916 1916 0.79363 0 1 86228 31401 3747 20900 20914 31006 31006 0.0874944195113585 NITMLDGR 8 Unmodified _NITMLDGR_ 0 0 0 REV__DOC2A|p.R8L|1|0.27|ENSG00000149927|chr16:30010200-30010200|C/A|missense_variant REV__DOC2A|p.R8L|1|0.27|ENSG00000149927|chr16:30010200-30010200|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2388610839844 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 64.247 1 60.99 60.49 61.49 -3.2567 0 0 0 0.21019 1 12061 12061 17.113 0.1706 1 + 31402 13734 20901 20915 31007 31007 -0.0031903201407885717 NITNHGFL 8 Unmodified _NITNHGFL_ 0 0 0 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23846435546875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 111.71 1 107.22 106.72 107.72 -4.4915 0 0 0 0.2074 1 21442 21442 19.439 1.304 1 31403 3711 20902 20916 31008 31008 0.00036345066200738074 NITRYFYEYDA 11 Unmodified _NITRYFYEYDA_ 0 0 0 ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1 ENSG00000009694|ENST00000371130|TENM1 ENSG00000009694|ENST00000371130|TENM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 485.6014709472656 3 485.557741 1453.6514 NaN NaN NaN NaN NaN NaN NaN 160.28 1 155.05 154.55 155.55 -5.2299 0 0 0 0.22632 1 31118 31118 0.094841 0.094277 1 31404 1052 20903 20917 31009 31009 -0.05728457852887914 NITWDRIY 8 Unmodified _NITWDRIY_ 0 0 0 ENST00000509538.5_1_4:185573199-185578558:+|nuORF ENST00000509538.5_1_4:185573199-185578558:+|nuORF ENST00000509538.5_1_4:185573199-185578558:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2781372070312 2 540.777274 1079.53999 -0.11425 -6.1784E-05 1.3141 0.00071064 1.1999 0.00064885 541.2795773388227 110.05 1.5504 105.6 104.85 106.4 -4.4518 98 43 3 0 0 0 8448 1 21027 21027 6.3914 0 1 5997700 31405 10735 20904 20918 31010 31010 0.003405723004561878 NIVFPDVTG 9 Unmodified _NIVFPDVTG_ 0 0 0 ENSG00000184925|ENST00000371633|LCN12 ENSG00000184925|ENST00000371633|LCN12 ENSG00000184925|ENST00000371633|LCN12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2546081542969 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 31.088 1 29.061 28.561 29.561 -2.0264 0 0 0 0.20628 1 5354 5354 21.747 4.8044 1 31406 6943 20905 20919 31011 31011 0.009820786605814646 NIVKHFHKPE 10 Unmodified _NIVKHFHKPE_ 0 0 0 ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B ENSG00000170456|ENST00000389082|DENND5B ENSG00000170456|ENST00000389082|DENND5B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 625.2013549804688 2 624.846022 1247.67749 NaN NaN NaN NaN NaN NaN NaN 168.9 1 164.03 163.53 164.53 -4.873 0 0 0 0.22588 1 33336 33336 9.3831 0.78985 1 31407 6070 20906 20920 31012 31012 0.06355900899916378 NIVKILFFIH 10 Unmodified _NIVKILFFIH_ 0 0 0 REV__ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant REV__ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7548217773438 2 622.381709 1242.74886 NaN NaN NaN NaN NaN NaN NaN 129.24 1 124.61 124.11 125.11 -4.6292 0 0 0 0.22588 1 25475 25475 3.5965 0 1 + 31408 19182 20907 20921 31013 31013 0.13720020604569072 NIVLKKKIKLY 11 Unmodified _NIVLKKKIKLY_ 0 0 0 REV__tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1 REV__tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7662658691406 3 453.974391 1358.90134 NaN NaN NaN NaN NaN NaN NaN 57.982 1 55.072 54.572 55.572 -2.9105 0 0 0 0.23698 1 11130 11130 0.094841 0 1 + 31409 24883 20908 20922 31014 31014 0.23624796281319504 NIVLLLALLL 10 Unmodified _NIVLLLALLL_ 0 0 0 REV__nc|ENSG00000188782|Q7RTX7-2|CATSPER4 REV__nc|ENSG00000188782|Q7RTX7-2|CATSPER4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7738647460938 2 547.88101 1093.74747 NaN NaN NaN NaN NaN NaN NaN 172.99 1 168.2 167.7 168.7 -4.7898 0 0 0 0.22588 1 35268 35268 3.5965 1.5367 1 + 31410 19169 20909 20923 31015 31015 0.20434386515808 NIVPIIQKQKE 11 Unmodified _NIVPIIQKQKE_ 0 0 0 REV__RELN|p.H3353Tfs*46|1|0.25|ENSG00000189056|chr7:103483777-103483777|G/-|frameshift_variant REV__RELN|p.H3353Tfs*46|1|0.25|ENSG00000189056|chr7:103483777-103483777|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 655.3936157226562 2 655.395544 1308.77654 NaN NaN NaN NaN NaN NaN NaN 167.87 1 162.92 162.42 163.42 -4.948 0 0 0 0.23379 1 33061 33061 5.2969 1.3525 1 + 31411 19188 20910 20924 31016 31016 0.13449879074119053 NIVSATKKQP 10 Unmodified _NIVSATKKQP_ 0 0 0 ENSG00000139354|ENST00000547754|GAS2L3 ENSG00000139354|ENST00000547754|GAS2L3 ENSG00000139354|ENST00000547754|GAS2L3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7715454101562 2 543.319306 1084.62406 0.33538 0.00018222 2.5486 0.0013847 2.884 0.0015669 543.8228765822022 134.34 1.0094 134.34 133.77 134.78 0 63 28 3 0 0 0 0.68961 1 26492 26492 12.241 0.60036 1 5910500 31412 4244 20911 20925 31017 31017 0.08513103397376653 NIWNEEEVNN 10 Unmodified _NIWNEEEVNN_ 0 0 0 PECR|p.R82W|1|0.17|ENSG00000115425|chr2:216066399-216066399|G/A|missense_variant PECR|p.R82W|1|0.17|ENSG00000115425|chr2:216066399-216066399|G/A|missense_variant PECR|p.R82W|1|0.17|ENSG00000115425|chr2:216066399-216066399|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7762451171875 2 630.778199 1259.54184 NaN NaN NaN NaN NaN NaN NaN 14.304 1 14.304 13.804 14.804 0 0 0 0 0.22588 1 2123 2123 3.2813 0.28607 1 31413 12774 20912 20926 31018 31018 -0.07754463472224415 NIYIRSQPV 9 Unmodified _NIYIRSQPV_ 0 0 0 nc|ENSG00000164398|Q9UKU0-7|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-5|ACSL6;nc|ENSG00000164398|Q9UKU0|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-9|ACSL6;nc|ENSG00000164398|Q9UKU0-6|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;ENSG00000164398|ENST00000651883|ACSL6 nc|ENSG00000164398|Q9UKU0-7|ACSL6 nc|ENSG00000164398|Q9UKU0-7|ACSL6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 545.5968017578125 2 545.306198 1088.59784 0.55577 0.00030306 3.2659 0.0017809 3.8216 0.002084 545.8076494742029 163.67 0.10178 158.61 158.52 158.63 -5.0648 4 2 2 0 0 0 0.8319 1 31841 31841 4.3292 0 1 3369400 31414 5542 20913 20927 31019 31019 0.057088342259021374 NIYLDFFY 8 Unmodified _NIYLDFFY_ 0 0 0 SLC22A2|p.D374G|1|0.16|ENSG00000112499|chr6:160243730-160243730|T/C|missense_variant;ENST00000486916.5_1_6:160592405-160666544:-|nuORF;SLC22A2|p.I433Lfs*17|1|0.43|ENSG00000112499|chr6:160242385-160242385|T/-|frameshift_variant;nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2 SLC22A2|p.D374G|1|0.16|ENSG00000112499|chr6:160243730-160243730|T/C|missense_variant SLC22A2|p.D374G|1|0.16|ENSG00000112499|chr6:160243730-160243730|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7880249023438 2 547.7633 1093.51205 NaN NaN NaN NaN NaN NaN NaN 154.98 1 149.72 149.22 150.22 -5.2526 0 0 0 0.2074 1 30051 30051 19.439 2.4967 1 31415 2698 20914 20928 31020 31020 -0.030967506796287125 NIYLDFFY 8 Unmodified _NIYLDFFY_ 0 0 0 SLC22A2|p.D374G|1|0.16|ENSG00000112499|chr6:160243730-160243730|T/C|missense_variant;ENST00000486916.5_1_6:160592405-160666544:-|nuORF;SLC22A2|p.I433Lfs*17|1|0.43|ENSG00000112499|chr6:160242385-160242385|T/-|frameshift_variant;nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2 SLC22A2|p.D374G|1|0.16|ENSG00000112499|chr6:160243730-160243730|T/C|missense_variant SLC22A2|p.D374G|1|0.16|ENSG00000112499|chr6:160243730-160243730|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7723999023438 2 547.7633 1093.51205 NaN NaN NaN NaN NaN NaN NaN 155.01 1 149.76 149.26 150.26 -5.2526 0 0 0 0.2074 1 30059 30059 19.439 0.18201 1 31416 2698 20914 20928 31021 31021 -0.030967506796287125 NIYRGPSI 8 Unmodified _NIYRGPSI_ 0 0 0 nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A;VWA5A|p.D571Mfs*3|1|0.56|ENSG00000110002|chr11:124137094-124137094|A/-|frameshift_variant;ENSG00000110002|ENST00000456829|VWA5A nc|ENSG00000110002|O00534-3|VWA5A nc|ENSG00000110002|O00534-3|VWA5A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2315368652344 2 460.253434 918.492316 NaN NaN NaN NaN NaN NaN NaN 80.767 1 77.079 76.579 77.579 -3.6879 0 0 0 0.21171 1 15399 15399 15.847 0 1 31417 2553 20915 20929 31022 31022 0.029809181002860896 NIYRKMNR 8 Unmodified _NIYRKMNR_ 0 0 0 REV__nc|ENSG00000109762|Q9H3E2-2|SNX25 REV__nc|ENSG00000109762|Q9H3E2-2|SNX25 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7686157226562 2 547.798017 1093.58148 NaN NaN NaN NaN NaN NaN NaN 171.55 1 171.55 171.05 172.05 0 0 0 0 0.21486 1 35350 35350 11.64 0.81637 1 + 31418 15175 20916 20930 31023 31023 0.038434297881622115 NIYVDIYF 8 Unmodified _NIYVDIYF_ 0 0 0 ENST00000368096.5_1_1:159888444-159888555:-|nuORF ENST00000368096.5_1_1:159888444-159888555:-|nuORF ENST00000368096.5_1_1:159888444-159888555:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6978759765625 2 523.7633 1045.51205 NaN NaN NaN NaN NaN NaN NaN 158.81 1 153.54 153.04 154.04 -5.2712 0 0 0 0.21323 1 30813 30813 14.582 1.5392 1 31419 9089 20917 20931 31024 31024 -0.008887506796099842 NKAKWDAWNA 10 Unmodified _NKAKWDAWNA_ 0 0 0 ENST00000464057.5_1_6:4126367-4135774:-|nuORF;ENST00000464583.5_1_6:4126367-4133998:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2 ENST00000464057.5_1_6:4126367-4135774:-|nuORF ENST00000464057.5_1_6:4126367-4135774:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2914428710938 2 602.298904 1202.58326 NaN NaN NaN NaN NaN NaN NaN 144.4 1 144.4 143.9 144.9 0 0 0 0 0.22588 1 28850 28850 6.7232 0 1 31420 7478 20918 20932 31025 31025 -0.009932379222391319 NKAPTLFF 8 Unmodified _NKAPTLFF_ 0 0 0 REV__ENSG00000187082|ENST00000335479|DEFB106B REV__ENSG00000187082|ENST00000335479|DEFB106B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1634826660156 3 313.176244 936.506903 NaN NaN NaN NaN NaN NaN NaN 77.343 1 73.684 73.184 74.184 -3.6588 0 0 0 0.21486 1 14723 14723 7.2892 2.96 1 + 31421 19038 20919 20933 31026 31026 0.03610990248421331 NKAPTLFF 8 Unmodified _NKAPTLFF_ 0 0 0 REV__ENSG00000187082|ENST00000335479|DEFB106B REV__ENSG00000187082|ENST00000335479|DEFB106B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.17578125 3 313.176244 936.506903 NaN NaN NaN NaN NaN NaN NaN 78.215 1 74.556 74.056 75.056 -3.6588 0 0 0 0.21486 1 14900 14900 3.9444 2.1002 1 + 31422 19038 20919 20933 31027 31027 0.03610990248421331 NKAQMTNI 8 Unmodified _NKAQMTNI_ 0 0 0 ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214 ENST00000534709.1_1_11:117152603-117155864:+|nuORF ENST00000534709.1_1_11:117152603-117155864:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2390441894531 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 83.827 1 83.827 83.327 84.327 0 0 0 0 0.21171 1 16343 16343 15.847 0 1 31423 5796 20920 20934 31028 31028 -0.0031903201407885717 NKARRSRSA 9 Unmodified _NKARRSRSA_ 0 0 0 ENST00000479037.5_1_2:230672327-230744801:-|nuORF;TRIP12|p.N880Kfs*36|1|0.21|ENSG00000153827|chr2:229804013-229804014|-/T|frameshift_variant;TRIP12|p.S1195Lfs*24|6|0.27|ENSG00000153827|chr2:229796599-229796599|A/-|frameshift_variant;TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12 ENST00000479037.5_1_2:230672327-230744801:-|nuORF ENST00000479037.5_1_2:230672327-230744801:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6917114257812 2 523.302313 1044.59007 0.36931 0.00019326 -0.14773 -7.7305E-05 0.22159 0.00011596 523.3018157310399 146.26 1.0488 141.26 140.81 141.86 -5 42 29 2 0 0 0 0.71913 1 28302 28302 26.268 8.1218 1 4709400 31424 4981 20921 20935 31029 31029 0.0695611974899748 NKCCCDCHSPS 11 Unmodified _NKCCCDCHSPS_ 0 0 0 REV__ENSG00000183775|ENST00000512467|KCTD16 REV__ENSG00000183775|ENST00000512467|KCTD16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 598.5855102539062 2 598.701211 1195.38787 NaN NaN NaN NaN NaN NaN NaN 166.13 1 161.19 160.69 161.69 -4.9484 0 0 0 0.22632 1 32522 32522 0.00056442 0 1 + 31425 18862 20922 20936 31030 31030 -0.202009790969214 NKDGEVPPEEF 11 Unmodified _NKDGEVPPEEF_ 0 0 0 ENST00000464180.1_1_17:39977184-39978657:+|nuORF;nc|ENSG00000141756|Q96AY3-2|FKBP10;FKBP10|p.P543Lfs*5|1|0.25|ENSG00000141756|chr17:41822285-41822285|C/-|frameshift_variant;ENSG00000141756|ENST00000321562|FKBP10 ENST00000464180.1_1_17:39977184-39978657:+|nuORF ENST00000464180.1_1_17:39977184-39978657:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7793579101562 2 630.790775 1259.567 NaN NaN NaN NaN NaN NaN NaN 136.38 1 131.48 130.98 131.98 -4.8951 0 0 0 0.22765 1 26206 26206 10.151 1.995 1 31426 4395 20923 20937 31031 31031 -0.05240408669669705 NKDNIGFHH 9 Unmodified _NKDNIGFHH_ 0 0 0 ENSG00000152595|ENST00000361056|MEPE;nc|ENSG00000152595|Q9NQ76-2|MEPE ENSG00000152595|ENST00000361056|MEPE ENSG00000152595|ENST00000361056|MEPE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2640380859375 2 541.262322 1080.51009 NaN NaN NaN NaN NaN NaN NaN 175.72 1 170.84 170.34 171.34 -4.8739 0 0 0 0.23508 1 34944 34944 2.3027 0.24298 1 31427 4934 20924 20938 31032 31032 -0.02694366644868751 NKDPAAYRF 9 Unmodified _NKDPAAYRF_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2672119140625 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 139.54 1 139.54 139.04 140.04 0 0 0 0 0.23508 1 27742 27742 10.824 1.4408 1 + 31428 14076 20925 20939 31033 31033 -0.001803118423140404 NKDPAAYRF 9 Unmodified _NKDPAAYRF_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2811889648438 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 142.84 1 138.18 137.68 138.68 -4.656 0 0 0 0.23508 1 28237 28237 10.824 1.4765 1 + 31429 14076 20925 20939 31034 31034 -0.001803118423140404 NKDPAAYRF 9 Unmodified _NKDPAAYRF_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2763671875 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 146.46 1 141.35 140.85 141.85 -5.1108 0 0 0 0.23508 1 28323 28323 10.824 1.4408 1 + 31430 14076 20925 20939 31035 31035 -0.001803118423140404 NKDTYEPFCK 10 Unmodified _NKDTYEPFCK_ 0 0 0 ENST00000545759.5_1_12:109895733-109895895:-|nuORF;nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10 ENST00000545759.5_1_12:109895733-109895895:-|nuORF ENST00000545759.5_1_12:109895733-109895895:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7647705078125 2 622.784438 1243.55432 NaN NaN NaN NaN NaN NaN NaN 141.3 1 136.44 135.94 136.94 -4.8678 0 0 0 0.22588 1 27266 27266 3.2813 0.28607 1 31431 2598 20926 20940 31036 31036 -0.057711433335725815 NKEALDKLY 9 Unmodified _NKEALDKLY_ 0 0 0 REV__nc|ENSG00000197555|O43166-3|SIPA1L1 REV__nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7808227539062 2 547.298039 1092.58152 0.31512 0.00017246 2.2908 0.0012537 2.6059 0.0014262 547.801839746229 152.26 0.14569 147.51 147.42 147.57 -4.7523 5 3 2 0 0 0 0.57447 1 30252 30252 14.838 0.93222 1 762400 + 31432 19346 20927 20941 31037 31037 0.038937082691290925 NKEDRPNRL 9 Unmodified _NKEDRPNRL_ 0 0 0 REV__ENST00000569782.2_1_16:31520289-31520549:+|nuORF REV__ENST00000569782.2_1_16:31520289-31520549:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.20587158203125 3 381.207266 1140.59997 NaN NaN NaN NaN NaN NaN NaN 28.552 1 28.552 28.052 29.052 0 0 0 0 0.23508 1 5074 5074 7.1017 0.37856 1 + 31433 23155 20928 20942 31038 31038 0.035292629637069695 NKEEMGLUD 9 Unmodified _NKEEMGLUD_ 0 0 0 REV__ENSG00000138018|ENST00000260585|SELENOI REV__ENSG00000138018|ENST00000260585|SELENOI MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7876586914062 2 543.687393 1085.36023 NaN NaN NaN NaN NaN NaN NaN 163.51 1 158.72 158.22 159.22 -4.7898 0 0 0 0.23508 1 32598 32598 0 0 0 + 31434 16427 20929 20943 31039 31039 -0.17903343324564958 NKEFNWWYDYY 11 Unmodified _NKEFNWWYDYY_ 0 0 0 tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7964477539062 3 543.233258 1626.67794 0.24815 0.0001348 1.6623 0.000903 1.9104 0.0010378 543.2338813082999 128.96 0.10117 124.22 124.16 124.26 -4.7408 4 2 2 0 0 0 0.96224 1 24821 24821 0.50596 0 1 526110 31435 25952 20930 20944 31040 31040 -0.11032768961558759 NKEIESLVY 9 Unmodified _NKEIESLVY_ 0 0 0 REV__ENSG00000116016|ENST00000263734|EPAS1 REV__ENSG00000116016|ENST00000263734|EPAS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7899780273438 2 547.790047 1093.56554 0.45205 0.00024763 -0.16875 -9.2438E-05 0.28331 0.00015519 547.7894396600394 73.96 0.55899 70.366 69.978 70.537 -3.594 20 15 2 0 0 0 0.36931 1 14047 14047 27.629 8.3718 1 911160 + 31436 15461 20931 20945 31041 31041 0.022500020322468117 NKELNGPSMSC 11 Unmodified _NKELNGPSMSC_ 0 0 0 REV__ENSG00000169410|ENST00000618819|PTPN9 REV__ENSG00000169410|ENST00000618819|PTPN9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2769165039062 2 590.260273 1178.50599 NaN NaN NaN NaN NaN NaN NaN 170.9 1 166.11 165.61 166.61 -4.7898 0 0 0 0.22595 1 34713 34713 11.495 1.4208 1 + 31437 18101 20932 20946 31042 31042 -0.07611960245094451 NKELWVLY 8 Unmodified _NKELWVLY_ 0 0 0 REV__ENSG00000122121|ENST00000371106|XPNPEP2 REV__ENSG00000122121|ENST00000371106|XPNPEP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2632446289062 2 532.792392 1063.57023 0.47867 0.00025503 -3.9349 -0.0020965 -3.4562 -0.0018414 532.7909886188654 102.74 0.45012 102.74 102.48 102.93 0 17 12 2 0 0 0 0.45067 1 20188 20188 30.225 1.1432 1 2089000 + 31438 15676 20933 20947 31043 31043 0.04098930965665204 NKENDDNNN 9 Unmodified _NKENDDNNN_ 0 0 0 REV__NPY1R|p.I384Nfs*12|1|0.22|ENSG00000164128|chr4:163325307-163325308|-/T|frameshift_variant REV__NPY1R|p.I384Nfs*12|1|0.22|ENSG00000164128|chr4:163325307-163325308|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 538.194091796875 2 538.715599 1075.41664 0.42368 0.00022824 -0.4788 -0.00025793 -0.055112 -2.969E-05 539.216939095001 40.978 0.35066 40.978 40.813 41.164 0 24 9 3 0 0 0 0.87634 1 7647 7647 0.35063 0 1 3078200 + 31439 24379 20934 20948 31044 31044 -0.1180475560861396 NKERQHKELAE 11 Unmodified _NKERQHKELAE_ 0 0 0 REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171 REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5244140625 3 461.244268 1380.71098 -1.3737 -0.00063362 1.3835 0.00063811 0.0097411 4.493E-06 461.2448791606703 17.077 0.79862 15.562 15.075 15.874 -1.5148 70 22 4 0 0 0 0.78834 1 2463 2463 5.1984 1.0818 1 3500400 + 31440 17734 20935 20949 31045 31045 0.03584857881173775 NKERQHKELAE 11 Unmodified _NKERQHKELAE_ 0 0 0 REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171 REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5244140625 3 461.244268 1380.71098 -1.3737 -0.00063362 1.3835 0.00063811 0.0097411 4.493E-06 461.2448791606703 17.077 0.79862 15.562 15.075 15.874 -1.5148 70 22 4 0 0 0 0.96158 1 2463 2463 5.1984 5.1984 1 3500400 + 31441 17734 20935 20949 31046 31046 0.03584857881173775 NKFDPKVDD 9 Unmodified _NKFDPKVDD_ 0 0 0 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2005615234375 3 359.845223 1076.51384 -0.29808 -0.00010726 1.0421 0.00037498 0.74398 0.00026772 359.8455768835058 18.298 0.34728 18.298 18.09 18.437 0 21 9 3 0 0 0 0.8606 1 2937 2937 7.1017 0 1 1699800 31442 4287 20936 20950 31047 31047 -0.021357416616638147 NKFLLKLL 8 Unmodified _NKFLLKLL_ 0 0 0 REV__tr|U7ST05|U7ST05_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01663PE=4SV=1 REV__tr|U7ST05|U7ST05_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01663PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 494.83026123046875 2 494.83132 987.648088 NaN NaN NaN NaN NaN NaN NaN 178.51 1 173.72 173.22 174.22 -4.7898 0 0 0 0.2396 1 36521 36521 0.12286 0 1 + 31443 25080 20937 20951 31048 31048 0.15376988621710552 NKFLLLLF 8 Unmodified _NKFLLLLF_ 0 0 0 ENST00000265838.8_1_11:108018210-108018318:+|nuORF ENST00000265838.8_1_11:108018210-108018318:+|nuORF ENST00000265838.8_1_11:108018210-108018318:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.54833984375 3 336.547789 1006.62154 NaN NaN NaN NaN NaN NaN NaN 4.7792 1 4.7792 4.2792 5.2792 0 0 0 0 0.2396 1 153 153 0 0 1 31444 8366 20938 20952 31049 31049 0.11849299730386065 NKFLTSLPQ 9 Unmodified _NKFLTSLPQ_ 0 0 0 tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 tr|U7SFS3|U7SFS3_FUSNUMetallophosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02337PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6976928710938 2 524.295299 1046.57605 -0.38609 -0.00020243 3.4095 0.0017876 3.0234 0.0015852 524.2978317683383 146.13 0.21252 141.02 140.86 141.07 -5.1108 6 5 2 0 0 0 0.76312 1 28249 28249 16.149 10.417 1 2754300 31445 25888 20939 20953 31050 31050 0.05462029477325814 NKFPYLRWWKK 11 Unmodified _NKFPYLRWWKK_ 0 0 0 REV__SNIP1|p.R258W|1|0.13|ENSG00000163877|chr1:37540311-37540311|G/A|missense_variant REV__SNIP1|p.R258W|1|0.13|ENSG00000163877|chr1:37540311-37540311|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2811889648438 3 522.629506 1564.86669 -0.14766 -7.7173E-05 1.2392 0.00064763 1.0915 0.00057046 522.6297327936383 143.64 0.10199 138.98 138.93 139.03 -4.656 4 2 2 0 0 0 0.96216 1 28404 28404 1.3296 0.92138 1 7880600 + 31446 24663 20940 20954 31051 31051 0.10684973193178848 NKFWKLTLDP 10 Unmodified _NKFWKLTLDP_ 0 0 0 REV__MYBPC2|p.P573Lfs*7|1|0.26|ENSG00000086967|chr19:50451968-50451968|C/-|frameshift_variant REV__MYBPC2|p.P573Lfs*7|1|0.26|ENSG00000086967|chr19:50451968-50451968|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7758178710938 2 631.350606 1260.68666 0.42906 0.00027089 2.2832 0.0014415 2.7122 0.0017124 631.352448897745 162.76 0.17799 157.61 157.54 157.72 -5.1438 6 4 2 0 0 0 0.91149 1 31651 31651 8.1555 0 1 6820100 + 31447 14489 20941 20955 31052 31052 0.0667424946555002 NKFWWENK 8 Unmodified _NKFWWENK_ 0 0 0 ENST00000534656.2_1_11:118868886-118869820:+|nuORF;ENST00000524670.5_1_11:118869052-118882689:+|nuORF;ENSG00000186166|ENST00000334418|CENATAC ENST00000534656.2_1_11:118868886-118869820:+|nuORF ENST00000534656.2_1_11:118868886-118869820:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3380737304688 2 576.285266 1150.55598 NaN NaN NaN NaN NaN NaN NaN 137.83 1 137.83 137.33 138.33 0 0 0 0 0.21486 1 27349 27349 6.7232 0 1 31448 7039 20942 20956 31053 31053 -0.013277214626441491 NKFYFPSLQPR 11 Unmodified _NKFYFPSLQPR_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 698.8291625976562 2 698.872237 1395.72992 0.42861 0.00029954 2.5429 0.0017772 2.9715 0.0020767 699.3750107386827 166.8 0.10043 161.86 161.8 161.9 -4.948 4 2 2 0 0 0 0.76088 1 32730 32730 7.609 0.88579 1 12156000 31449 6113 20943 20957 31054 31054 0.04788439242838649 NKFYRPNEYPR 11 Unmodified _NKFYRPNEYPR_ 0 0 0 REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;REV__LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.374267578125 2 742.375675 1482.7368 NaN NaN NaN NaN NaN NaN NaN 24.718 1 23.184 22.684 23.684 -1.5342 0 0 0 0.2367 1 4035 4035 2.9952 0 1 + 31450 18047;23811 20944 20958 31055 31055 0.014737521234110318 NKFYYYEMC 9 Unmodified _NKFYYYEMC_ 0 0 0 REV__ENST00000360351.8_2_2:210595311-210595557:+|nuORF REV__ENST00000360351.8_2_2:210595311-210595557:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7584228515625 2 630.756835 1259.49912 NaN NaN NaN NaN NaN NaN NaN 27.541 1 25.786 25.286 26.286 -1.7552 0 0 0 0.19626 1 4614 4614 0.0033805 0.0019993 1 + 31451 20865 20945 20959 31056 31056 -0.12025273125686908 NKGLLEQSQY 10 Unmodified _NKGLLEQSQY_ 0 0 0 REV__ARNT|p.P388S|1|0.15|ENSG00000143437|chr1:150829098-150829098|G/A|missense_variant REV__ARNT|p.P388S|1|0.15|ENSG00000143437|chr1:150829098-150829098|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.277099609375 2 590.303852 1178.59315 NaN NaN NaN NaN NaN NaN NaN 122.87 1 118.14 117.64 118.64 -4.731 0 0 0 0.22588 1 23602 23602 10.824 1.4408 1 + 31452 13126 20946 20960 31057 31057 0.010999052924717034 NKGNEPPPPP 10 Unmodified _NKGNEPPPPP_ 0 0 0 ENSG00000176407|ENST00000409785|KCMF1 ENSG00000176407|ENST00000409785|KCMF1 ENSG00000176407|ENST00000409785|KCMF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6760864257812 2 523.766906 1045.51926 0.22943 0.00012017 0.06314 3.3071E-05 0.29257 0.00015324 523.7667363873418 25.338 1.6976 25.338 23.863 25.561 0 103 49 3 0 0 0 0.18128 3 4317 4233;4253;4317 45.74 5.7902 1 2471800 31453 6464 20947 20961 31058;31059;31060 31060 -0.0016801807919364364 NKGNEPPPPP 10 Unmodified _NKGNEPPPPP_ 0 0 0 ENSG00000176407|ENST00000409785|KCMF1 ENSG00000176407|ENST00000409785|KCMF1 ENSG00000176407|ENST00000409785|KCMF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6856689453125 2 523.766906 1045.51926 -0.35616 -0.00018655 0.1905 9.9777E-05 -0.16566 -8.6769E-05 524.2683829667465 27.081 1.9513 25.446 23.926 25.877 -1.6347 111 55 3 0 0 0 0.14103 1 4519 4519 49.554 9.6046 1 4641100 31454 6464 20947 20961 31061 31061 -0.0016801807919364364 NKGNEPPPPP 10 Unmodified _NKGNEPPPPP_ 0 0 0 ENSG00000176407|ENST00000409785|KCMF1 ENSG00000176407|ENST00000409785|KCMF1 ENSG00000176407|ENST00000409785|KCMF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6858520507812 2 523.766906 1045.51926 -0.30152 -0.00015793 0.99253 0.00051986 0.69101 0.00036193 523.7673998904202 27.844 0.63153 26.089 25.965 26.597 -1.7552 33 17 2 0 0 0 0.8126 1 4705 4705 24.991 2.2547 1 1566600 31455 6464 20947 20961 31062 31062 -0.0016801807919364364 NKGNEPPPPP 10 Unmodified _NKGNEPPPPP_ 0 0 0 ENSG00000176407|ENST00000409785|KCMF1 ENSG00000176407|ENST00000409785|KCMF1 ENSG00000176407|ENST00000409785|KCMF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7015991210938 2 523.766906 1045.51926 0.15281 8.0036E-05 -0.35641 -0.00018668 -0.2036 -0.00010664 523.7669541401945 27.322 1.9426 25.4 23.849 25.791 -1.9222 115 55 3 0 0 0 0.10731 3 4514 4350;4503;4514 57.722 2.2295 1 3102700 31456 6464 20947 20961 31063;31064;31065 31065 -0.0016801807919364364 NKGNKIFYC 9 Unmodified _NKGNKIFYC_ 0 0 0 REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7749633789062 2 543.773677 1085.5328 NaN NaN NaN NaN NaN NaN NaN 171.35 1 166.56 166.06 167.06 -4.7898 0 0 0 0.23508 1 34835 34835 7.9102 1.187 1 + 31457 25300 20948 20962 31066 31066 -0.006544835716113084 NKHGGIIHIY 10 Unmodified _NKHGGIIHIY_ 0 0 0 ENST00000397254.2_1_X:43889279-43890164:+|nuORF ENST00000397254.2_1_X:43889279-43890164:+|nuORF ENST00000397254.2_1_X:43889279-43890164:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3139038085938 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 156.74 1 151.46 150.96 151.96 -5.2854 0 0 0 0.22588 1 30410 30410 10.824 0.75 1 31458 9460 20949 20963 31067 31067 0.05543942837107352 NKHKGKRRV 9 Unmodified _NKHKGKRRV_ 0 0 0 nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENSG00000038532|ENST00000409790|CLEC16A;CLEC16A|p.Y604Ifs*18|1|0.23|ENSG00000038532|chr16:11044063-11044063|T/-|frameshift_variant;CLEC16A|p.L611Wfs*11|4|0.33|ENSG00000038532|chr16:11047302-11047302|T/-|frameshift_variant nc|ENSG00000038532|Q2KHT3-2|CLEC16A nc|ENSG00000038532|Q2KHT3-2|CLEC16A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.91943359375 3 374.903741 1121.68939 NaN NaN NaN NaN NaN NaN NaN 11.02 1 10.116 9.6161 10.616 -0.90401 0 0 0 0.23508 1 1428 1428 0.26902 0 1 31459 1184 20950 20964 31068 31068 0.13341562433743093 NKIKLKLLVL 10 Unmodified _NKIKLKLLVL_ 0 0 0 tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1 tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1 tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 591.3931884765625 2 591.420834 1180.82712 NaN NaN NaN NaN NaN NaN NaN 170.18 1 170.18 169.68 170.68 0 0 0 0 2.8426 1 34981 34981 0.01381 0 1 31460 25917 20951 20965 31069 31069 0.24393453189782122 NKINEPSTY 9 Unmodified _NKINEPSTY_ 0 0 0 ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant;ZDBF2|p.L2270*|1|0.42|ENSG00000204186|chr2:206311334-206311334|T/-|frameshift_variant;ENSG00000204186|ENST00000374423|ZDBF2 ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2609252929688 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 134.78 1 134.78 134.28 135.28 0 0 0 0 0.23508 1 26684 26684 10.074 2.1638 1 31461 7565 20952 20966 31070 31070 -0.015837416616705013 NKIVFFRY 8 Unmodified _NKIVFFRY_ 0 0 0 ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.785888671875 2 543.808377 1085.6022 0.37029 0.00020137 0.53579 0.00029137 0.90608 0.00049273 543.8083211723947 110.71 0.70132 110.71 110.33 111.03 0 40 19 3 0 0 0 8448 1 21781 21781 1.4551 0 1 2524200 31462 25620 20953 20967 31071 31071 0.06282343439465876 NKIVFFRY 8 Unmodified _NKIVFFRY_ 0 0 0 ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7772827148438 2 543.808377 1085.6022 0.22567 0.00012272 -0.0084843 -4.6138E-06 0.21718 0.00011811 543.808303356675 115.35 0.7881 110.88 110.43 111.22 -4.4726 35 22 2 0 0 0 8448 1 22661 22661 1.7423 0 1 2517800 31463 25620 20953 20967 31072 31072 0.06282343439465876 NKIVFFRY 8 Unmodified _NKIVFFRY_ 0 0 0 ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.788818359375 2 543.808377 1085.6022 0.22123 0.00012031 0.38363 0.00020862 0.60486 0.00032893 543.8085587086148 115.19 0.96236 110.64 110.08 111.04 -4.555 40 26 2 0 0 0 8448 1 22090 22090 2.643 0 1 2107300 31464 25620 20953 20967 31073 31073 0.06282343439465876 NKIVFFRY 8 Unmodified _NKIVFFRY_ 0 0 0 ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7866821289062 2 543.808377 1085.6022 0.11095 6.0333E-05 0.054958 2.9886E-05 0.1659 9.022E-05 544.3100439322255 142.7 0.14027 137.68 137.58 137.72 -5.0261 6 3 2 0 0 0 0.71273 1 27509 27509 12.532 3.1484 1 967090 31465 25620 20953 20967 31074 31074 0.06282343439465876 NKIVFFRY 8 Unmodified _NKIVFFRY_ 0 0 0 ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7868041992188 2 543.808377 1085.6022 0.61358 0.00033367 0.019259 1.0473E-05 0.63284 0.00034414 543.8081457646488 114.97 0.8457 110.66 110.13 110.98 -4.3135 46 23 3 0 0 0 8448 1 22103 22103 1.7423 0 1 2517800 31466 25620 20953 20967 31075 31075 0.06282343439465876 NKKELSAVCPD 11 Unmodified _NKKELSAVCPD_ 0 0 0 ENST00000573951.1_1_16:3313772-3314576:+|nuORF ENST00000573951.1_1_16:3313772-3314576:+|nuORF ENST00000573951.1_1_16:3313772-3314576:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.294189453125 2 602.305538 1202.59652 NaN NaN NaN NaN NaN NaN NaN 158.81 1 154.01 153.51 154.51 -4.7952 0 0 0 0.23151 1 31582 31582 7.1017 0.37856 1 31467 11441 20954 20968 31076 31076 0.0033283207483236765 NKKFKLLKKL 10 Unmodified _NKKFKLLKKL_ 0 0 0 tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1 tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1 tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7518310546875 2 630.431733 1258.84891 NaN NaN NaN NaN NaN NaN NaN 114.04 1 114.04 113.54 114.54 0 0 0 0 0.22588 1 22427 22427 0.40072 0 1 31468 26069 20955 20969 31077 31077 0.22984257938378505 NKKGIEIMF 9 Unmodified _NKKGIEIMF_ 0 0 0 REV__ENST00000531381.1_1_11:121960972-121961020:-|nuORF REV__ENST00000531381.1_1_11:121960972-121961020:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017822265625 3 360.535444 1078.5845 -0.29265 -0.00010551 0.27151 9.7888E-05 -0.021145 -7.6235E-06 360.5355117912817 91.968 1.1696 88.043 87.098 88.267 -3.9251 38 14 3 0 0 0 0.74257 1 17835 17835 2.4985 0 1 4971700 + 31469 22769 20956 20970 31078 31078 0.04835260122285945 NKKKIELVKKS 11 Unmodified _NKKKIELVKKS_ 0 0 0 REV__NME8|p.R175Kfs*15|1|0.35|ENSG00000086288|chr7:37864412-37864413|-/A|frameshift_variant REV__NME8|p.R175Kfs*15|1|0.35|ENSG00000086288|chr7:37864412-37864413|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 657.9281616210938 2 657.927012 1313.83947 NaN NaN NaN NaN NaN NaN NaN 167.68 1 162.89 162.39 163.39 -4.7898 0 0 0 0.22632 1 33846 33846 0.0059557 0 1 + 31470 24367 20957 20971 31079 31079 0.19510444862157783 NKKLKRLF 8 Unmodified _NKKLKRLF_ 0 0 0 REV__tr|U7T3Y8|U7T3Y8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00308PE=4SV=1 REV__tr|U7T3Y8|U7T3Y8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00308PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.67919921875 2 523.845294 1045.67603 NaN NaN NaN NaN NaN NaN NaN 150.65 1 145.53 145.03 146.03 -5.1204 0 0 0 0.21486 1 29198 29198 8.5933 0 1 + 31471 25381 20958 20972 31080 31080 0.1550231160176736 NKKNKTKKKK 10 Unmodified _NKKNKTKKKK_ 0 0 0 REV__ENSG00000198919|ENST00000361582|DZIP3 REV__ENSG00000198919|ENST00000361582|DZIP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7512817382812 2 622.911696 1243.80884 NaN NaN NaN NaN NaN NaN NaN 142.37 1 137.35 136.85 137.85 -5.0261 0 0 0 0.22588 1 27441 27441 3.5965 0.31518 1 + 31472 19483 20959 20973 31081 31081 0.19668711267763683 NKKRLVKLWER 11 Unmodified _NKKRLVKLWER_ 0 0 0 REV__tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1 REV__tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2684326171875 3 490.640294 1468.89905 NaN NaN NaN NaN NaN NaN NaN 146.2 1 146.2 145.7 146.7 0 0 0 0 0.22632 1 29230 29230 0.026206 0.026206 1 + 31473 25387 20960 20974 31082 31082 0.18335760596187356 NKKWCDFMWW 10 Unmodified _NKKWCDFMWW_ 0 0 0 REV__ENSG00000165434|ENST00000298198|PGM2L1 REV__ENSG00000165434|ENST00000298198|PGM2L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.8831787109375 3 481.882737 1442.62638 NaN NaN NaN NaN NaN NaN NaN 164.16 1 164.16 163.66 164.66 0 0 0 0 2.8426 1 33163 33163 0.0013812 0 1 + 31474 17769 20961 20975 31083 31083 -0.07722507460835004 NKLEKELYENY 11 Unmodified _NKLEKELYENY_ 0 0 0 REV__tr|U7SQ43|U7SQ43_FUSNUGlutaminesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01684PE=3SV=1 REV__tr|U7SQ43|U7SQ43_FUSNUGlutaminesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01684PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2414855957031 3 481.576913 1441.70891 0.24838 0.00011962 -1.864 -0.00089767 -1.6156 -0.00077806 481.5763414177785 73.635 0.45087 69.958 69.757 70.208 -3.6764 18 12 2 0 0 0 0.96129 1 13945 13945 6.2344 2.3884 1 1080000 + 31475 25009 20962 20976 31084 31084 0.005723843526993733 NKLFKKLL 8 Unmodified _NKLFKKLL_ 0 0 0 REV__DEPDC1B|p.Q74P|1|0.3|ENSG00000035499|chr5:60687055-60687055|T/G|missense_variant REV__DEPDC1B|p.Q74P|1|0.3|ENSG00000035499|chr5:60687055-60687055|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 502.71771240234375 2 502.33677 1002.65899 NaN NaN NaN NaN NaN NaN NaN 151.97 1 151.97 151.47 152.47 0 0 0 0 0.2396 1 30439 30439 0.063987 0.055711 1 + 31476 13667 20963 20977 31085 31085 0.15776390995984002 NKLFLLKLY 9 Unmodified _NKLFLLKLY_ 0 0 0 REV__ABCG2|p.K653Nfs*11|1|0.35|ENSG00000118777|chr4:88092243-88092243|T/-|frameshift_variant REV__ABCG2|p.K653Nfs*11|1|0.35|ENSG00000118777|chr4:88092243-88092243|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3237915039062 2 576.362985 1150.71142 NaN NaN NaN NaN NaN NaN NaN 75.105 1 71.382 70.882 71.882 -3.7227 0 0 0 0.23508 1 14199 14199 12.532 5.8084 1 + 31477 12905 20964 20978 31086 31086 0.1420892933892901 NKLIRVLQPV 10 Unmodified _NKLIRVLQPV_ 0 0 0 REV__nc|ENSG00000166747|O43747-2|AP1G1 REV__nc|ENSG00000166747|O43747-2|AP1G1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2744140625 2 590.38224 1178.74993 0.3567 0.00021059 -3.1407 -0.0018542 -2.784 -0.0016436 590.3813781531343 163.14 0.10638 163.14 163.07 163.18 0 4 2 2 0 0 0 0.89521 1 32846 32846 3.5965 0 1 4326300 + 31478 17868 20965 20979 31087 31087 0.16770234973455445 NKLKNLPLPD 10 Unmodified _NKLKNLPLPD_ 0 0 0 ENSG00000181754|ENST00000369864|AMIGO1 ENSG00000181754|ENST00000369864|AMIGO1 ENSG00000181754|ENST00000369864|AMIGO1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.337646484375 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 81.632 1 77.793 77.293 78.293 -3.8392 0 0 0 0.22588 1 15500 15500 10.074 1.9184 1 31479 6739 20966 20980 31088 31088 0.10169962948521061 NKLNNGKAGY 10 Unmodified _NKLNNGKAGY_ 0 0 0 REV__tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 REV__tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.1999816894531 3 360.192845 1077.55671 -0.76107 -0.00027413 0.73862 0.00026605 -0.02245 -8.0862E-06 360.1930556975416 49.483 0.49837 46.477 46.276 46.774 -3.0068 17 13 2 0 0 0 0.76216 1 9056 9056 1.9064 1.9064 1 560870 + 31480 25181 20967 20981 31089 31089 0.02103073186435722 NKLRPRTKK 9 Unmodified _NKLRPRTKK_ 0 0 0 REV__nc|ENSG00000015153|Q8IY57-3|YAF2 REV__nc|ENSG00000015153|Q8IY57-3|YAF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 570.9191284179688 2 570.869831 1139.72511 NaN NaN NaN NaN NaN NaN NaN 165.77 1 160.98 160.48 161.48 -4.7898 0 0 0 0.23508 1 33230 33230 6.7232 0.51738 1 + 31481 13958 20968 20982 31090 31090 0.16083599890725964 NKLTGEVVAL 10 Unmodified _NKLTGEVVAL_ 0 0 0 nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2 nc|ENSG00000123374|P24941-2|CDK2 nc|ENSG00000123374|P24941-2|CDK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.263427734375 2 522.308406 1042.60226 -0.61848 -0.00032304 -0.68411 -0.00035732 -1.3026 -0.00068035 522.8091540928525 37.787 0.34254 35.439 35.308 35.651 -2.3479 12 9 2 0 0 0 0.86078 1 6698 6698 12.241 5.5175 1 458390 31482 3264 20969 20983 31091 31091 0.08266298648823067 NKLYLVLKK 9 Unmodified _NKLYLVLKK_ 0 0 0 REV__ENSG00000104332|ENST00000220772|SFRP1 REV__ENSG00000104332|ENST00000220772|SFRP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 559.6492309570312 2 559.868434 1117.72232 NaN NaN NaN NaN NaN NaN NaN 172.02 1 167.23 166.73 167.73 -4.7898 0 0 0 0.23508 1 35014 35014 7.2892 2.5332 1 + 31483 14915 20970 20984 31092 31092 0.1681633171322119 NKMQAKHPSY 10 Unmodified _NKMQAKHPSY_ 0 0 0 REV__ENSG00000136854|ENST00000373299|STXBP1 REV__ENSG00000136854|ENST00000373299|STXBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3001098632812 2 602.30059 1202.58663 NaN NaN NaN NaN NaN NaN NaN 138.75 1 138.75 138.25 139.25 0 0 0 0 0.22588 1 27560 27560 6.7232 0 1 + 31484 16355 20971 20985 31093 31093 -0.006563111398918409 NKNKMMPV 8 Unmodified _NKNKMMPV_ 0 0 0 nc|ENSG00000145700|Q8N7Z5|ANKRD31;ENSG00000145700|ENST00000506364|ANKRD31 nc|ENSG00000145700|Q8N7Z5|ANKRD31 nc|ENSG00000145700|Q8N7Z5|ANKRD31 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.169677734375 3 321.170107 960.488493 NaN NaN NaN NaN NaN NaN NaN 82.093 1 78.405 77.905 78.905 -3.6879 0 0 0 0.21486 1 15651 15651 0.45834 0 1 31485 4613 20972 20986 31094 31094 0.006667890105632068 NKNKRHLLE 9 Unmodified _NKNKRHLLE_ 0 0 0 REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|102|2|sense REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|102|2|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.333740234375 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 151.07 1 151.07 150.57 151.57 0 0 0 0 0.23508 1 30250 30250 6.7232 0.51738 1 + 31486 23769 20973 20987 31095 31095 0.08778730240078403 NKNRLRRI 8 Unmodified _NKNRLRRI_ 0 0 0 ENST00000479768.6_1_7:142643674-142659293:-|nuORF;ENSG00000197993|ENST00000355265|KEL ENST00000479768.6_1_7:142643674-142659293:-|nuORF ENST00000479768.6_1_7:142643674-142659293:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5611267089844 3 357.228224 1068.66284 NaN NaN NaN NaN NaN NaN NaN 80.828 1 77.14 76.64 77.64 -3.6879 0 0 0 0.2396 1 15410 15410 0.0082765 0 1 31487 7419 20974 20988 31096 31096 0.13125873542412592 NKNVIKNFF 9 Unmodified _NKNVIKNFF_ 0 0 0 REV__ENSG00000105976|ENST00000397752|MET REV__ENSG00000105976|ENST00000397752|MET MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2135009765625 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 15.421 1 15.421 14.921 15.921 0 0 0 0 0.19634 1 2347 2347 0.12781 0.12643 1 + 31488 15025 20975 20989 31097 31097 0.06217424605551969 NKNWWNYHVFY 11 Unmodified _NKNWWNYHVFY_ 0 0 0 REV__ENST00000433352.1_1_X:64550801-64551062:-|nuORF REV__ENST00000433352.1_1_X:64550801-64551062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3970947265625 2 785.864943 1569.71533 NaN NaN NaN NaN NaN NaN NaN 151.63 1 146.88 146.38 147.38 -4.7523 0 0 0 0.23698 1 30128 30128 1.3295 0.13619 1 + 31489 21643 20976 20990 31098 31098 -0.04673632905314662 NKNWWNYHVFY 11 Unmodified _NKNWWNYHVFY_ 0 0 0 REV__ENST00000433352.1_1_X:64550801-64551062:-|nuORF REV__ENST00000433352.1_1_X:64550801-64551062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3992919921875 2 785.864943 1569.71533 NaN NaN NaN NaN NaN NaN NaN 153.65 1 148.43 147.93 148.93 -5.2209 0 0 0 0.23698 1 29780 29780 1.3295 0.36726 1 + 31490 21643 20976 20990 31099 31099 -0.04673632905314662 NKPCYCSTQ 9 Unmodified _NKPCYCSTQ_ 0 0 0 REV__ENSG00000186970|ENST00000334067|KRTAP15-1 REV__ENSG00000186970|ENST00000334067|KRTAP15-1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.28125 2 522.217877 1042.4212 NaN NaN NaN NaN NaN NaN NaN 139.12 1 139.12 138.62 139.62 0 0 0 0 0.23508 1 27643 27643 4.3292 0 1 + 31491 19068 20977 20991 31100 31100 -0.09831285991072036 NKPDTDIA 8 Unmodified _NKPDTDIA_ 0 0 0 REV__ENSG00000139865|ENST00000553443|TTC6 REV__ENSG00000139865|ENST00000553443|TTC6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2181396484375 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 95.406 1 91.356 90.856 91.856 -4.0496 0 0 0 0.21486 1 18700 18700 7.9102 0.62092 1 + 31492 16547 20978 20992 31101 31101 -0.017353712702401936 NKQLQSISF 9 Unmodified _NKQLQSISF_ 0 0 0 REV__CYP7B1|p.T329Ffs*5|1|0.05|ENSG00000172817|chr8:64615099-64615100|-/ATGAAGAAAAGAAG|frameshift_variant REV__CYP7B1|p.T329Ffs*5|1|0.05|ENSG00000172817|chr8:64615099-64615100|-/ATGAAGAAAAGAAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2628784179688 2 532.790381 1063.56621 0.35129 0.00018717 0.30391 0.00016192 0.6552 0.00034908 532.7902519482249 118.91 0.71004 114.41 114.15 114.86 -4.502 26 19 2 0 0 0 0.17935 1 23460 23460 39.95 0 1 2151100 + 31493 13631 20979 20993 31102 31102 0.036968414719467546 NKQSKLWLEY 10 Unmodified _NKQSKLWLEY_ 0 0 0 REV__nc|ENSG00000122299|Q8IWR0-2|ZC3H7A REV__nc|ENSG00000122299|Q8IWR0-2|ZC3H7A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2153625488281 3 436.903072 1307.68739 -0.14714 -6.4288E-05 -0.23794 -0.00010396 -0.38508 -0.00016824 436.90288228567937 114.99 0.51725 110.52 110.33 110.84 -4.4726 22 14 2 0 0 0 0.75985 1 22632 22632 2.6312 1.039 1 1164200 + 31494 15684 20980 20994 31103 31103 0.04585044114628545 NKRAVSPQTPY 11 Unmodified _NKRAVSPQTPY_ 0 0 0 REV__COL1A1|p.Q1309R|1|0.32|ENSG00000108821|chr17:50186396-50186396|T/C|missense_variant REV__COL1A1|p.Q1309R|1|0.32|ENSG00000108821|chr17:50186396-50186396|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7579956054688 2 630.838394 1259.66223 NaN NaN NaN NaN NaN NaN NaN 155.1 1 149.82 149.32 150.32 -5.2854 0 0 0 0.22943 1 30081 30081 8.7454 1.6437 1 + 31495 13479 20981 20995 31104 31104 0.04278989312047088 NKRGKVYLLL 10 Unmodified _NKRGKVYLLL_ 0 0 0 REV__SOHLH2|p.P229L|1|0.37|ENSG00000120669|chr13:36174825-36174825|G/A|missense_variant REV__SOHLH2|p.P229L|1|0.37|ENSG00000120669|chr13:36174825-36174825|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.273193359375 2 602.38224 1202.74993 NaN NaN NaN NaN NaN NaN NaN 172.57 1 167.67 167.17 168.17 -4.8977 0 0 0 0.22588 1 34231 34231 3.5965 0 1 + 31496 24666 20982 20996 31105 31105 0.1566623497344608 NKRKCKKQKQK 11 Unmodified _NKRKCKKQKQK_ 0 0 0 ENST00000242159.4_1_7:27194333-27194531:-|nuORF ENST00000242159.4_1_7:27194333-27194531:-|nuORF ENST00000242159.4_1_7:27194333-27194531:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 708.961181640625 2 708.932637 1415.85072 NaN NaN NaN NaN NaN NaN NaN 166.21 1 161.42 160.92 161.92 -4.7898 0 0 0 0.22943 1 33363 33363 8.7454 0 1 31497 8190 20983 20997 31106 31106 0.15942943684649435 NKRKFVMHIYY 11 Unmodified _NKRKFVMHIYY_ 0 0 0 REV__tr|U7STX4|U7STX4_FUSNUDUF2207domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01600PE=4SV=1 REV__tr|U7STX4|U7STX4_FUSNUDUF2207domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01600PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2143859863281 4 375.455145 1497.79147 -0.24231 -9.0976E-05 -1.1368 -0.00042681 -1.3791 -0.00051778 375.4547275499243 16.55 0.41119 16.55 16.335 16.746 0 37 11 4 0 0 0 0.96165 1 2577 2577 2.4348 0 1 5958600 + 31498 25126 20984 20998 31107 31107 0.062490476705079345 NKRKKKLHV 9 Unmodified _NKRKKKLHV_ 0 0 0 ENST00000467485.5_1_6:26390412-26390454:+|nuORF ENST00000467485.5_1_6:26390412-26390454:+|nuORF ENST00000467485.5_1_6:26390412-26390454:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3138427734375 2 575.880199 1149.74584 NaN NaN NaN NaN NaN NaN NaN 169.49 1 164.62 164.12 165.12 -4.873 0 0 0 0.23508 1 33476 33476 4.3292 0.38484 1 31499 10150 20985 20999 31108 31108 0.1769619027038516 NKRRKRRK 8 Unmodified _NKRRKRRK_ 0 0 0 REV__ENSG00000163935|ENST00000394752|SFMBT1 REV__ENSG00000163935|ENST00000394752|SFMBT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2476501464844 3 381.254885 1140.74283 NaN NaN NaN NaN NaN NaN NaN 96.455 1 92.357 91.857 92.857 -4.0978 0 0 0 0.21486 1 18916 18916 0.40072 0.050084 1 + 31500 17630 20986 21000 31109 31109 0.17808359936248053 NKRSKYYFWFE 11 Unmodified _NKRSKYYFWFE_ 0 0 0 REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.398681640625 2 784.388251 1566.76195 0.32112 0.00025188 4.0429 0.0031712 4.364 0.0034231 784.8924012691567 141.44 0.17917 136.45 136.34 136.52 -4.9877 9 4 3 0 0 0 0.81736 1 27234 27234 1.3295 0.13619 1 5216300 + 31501 17671 20987 21001 31110 31110 0.0012380692598981113 NKSQGVWP 8 Unmodified _NKSQGVWP_ 0 0 0 nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9 nc|ENSG00000122507|Q3SYG4-6|BBS9 nc|ENSG00000122507|Q3SYG4-6|BBS9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2386474609375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 164.24 1 159.2 158.7 159.7 -5.0446 0 0 0 0.21486 1 32020 32020 11.64 0 1 31502 3226 20988 21002 31111 31111 0.0003634506618936939 NKSQPTLQ 8 Unmodified _NKSQPTLQ_ 0 0 0 ZNF618|p.E752K|1|0.25|ENSG00000157657|chr9:114049556-114049556|G/A|missense_variant ZNF618|p.E752K|1|0.25|ENSG00000157657|chr9:114049556-114049556|G/A|missense_variant ZNF618|p.E752K|1|0.25|ENSG00000157657|chr9:114049556-114049556|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2243957519531 2 458.248349 914.482145 -0.051157 -2.3443E-05 0.47365 0.00021705 0.4225 0.00019361 458.24854597238146 53.238 0.33844 50.143 49.967 50.306 -3.0954 11 9 2 0 0 0 8448 1 9833 9833 1.7423 0 1 479060 31503 26632 20989 21003 31112 31112 0.021483103750597365 NKSVEYLKRNG 11 Unmodified _NKSVEYLKRNG_ 0 0 0 tr|U7SR06|U7SR06_FUSNUReleasefactorglutaminemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmCPE=3SV=1 tr|U7SR06|U7SR06_FUSNUReleasefactorglutaminemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmCPE=3SV=1 tr|U7SR06|U7SR06_FUSNUReleasefactorglutaminemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prmCPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2177429199219 3 436.573726 1306.69935 -1.7885 -0.00078079 -0.51766 -0.000226 -2.3061 -0.0010068 436.57349617017735 13.33 0.23697 12.21 12.094 12.331 -1.1206 18 6 4 0 0 0 0.8117 1 1677 1677 2.084 0.34169 1 1551600 31504 26073 20990 21004 31113 31113 0.058266608578151136 NKTGKYVPPSL 11 Unmodified _NKTGKYVPPSL_ 0 0 0 ENST00000590158.1_1_19:10225792-10226817:-|nuORF;ENSG00000130811|ENST00000253108|EIF3G ENST00000590158.1_1_19:10225792-10226817:-|nuORF ENST00000590158.1_1_19:10225792-10226817:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2843627929688 2 602.340238 1202.66592 NaN NaN NaN NaN NaN NaN NaN 144.04 1 144.04 143.54 144.54 0 0 0 0 0.22421 1 28764 28764 12.873 1.3779 1 31505 3639 20991 21005 31114 31114 0.07269659085886815 NKTIIQKW 8 Unmodified _NKTIIQKW_ 0 0 0 REV__ENST00000370765.10_1_6:56483328-56483529:-|nuORF REV__ENST00000370765.10_1_6:56483328-56483529:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.1287841796875 3 344.206315 1029.59712 NaN NaN NaN NaN NaN NaN NaN 98.966 1 95.01 94.51 95.51 -3.9564 0 0 0 0.21486 1 18996 18996 1.3295 0 1 + 31506 20991 20992 21006 31115 31115 0.08350039576839663 NKTKNTEPY 9 Unmodified _NKTKNTEPY_ 0 0 0 REV__N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant REV__N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7694091796875 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 142.09 1 142.09 141.59 142.59 0 0 0 0 0.23508 1 28328 28328 11.64 1.5664 1 + 31507 14855 20993 21007 31116 31116 -0.0026405277033063612 NKTQTEQL 8 Unmodified _NKTQTEQL_ 0 0 0 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.1698913574219 3 321.169818 960.487624 NaN NaN NaN NaN NaN NaN NaN 78.023 1 78.023 77.523 78.523 0 0 0 0 0.21486 1 15181 15181 0.45834 0 1 + 31508 17614 20994 21008 31117 31117 0.005799891668516466 NKTTERAPE 9 Unmodified _NKTTERAPE_ 0 0 0 nc|ENSG00000141446|Q5FWF5-2|ESCO1;ENSG00000141446|ENST00000269214|ESCO1 nc|ENSG00000141446|Q5FWF5-2|ESCO1 nc|ENSG00000141446|Q5FWF5-2|ESCO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.269287109375 2 523.26727 1044.51999 0.60982 0.0003191 -0.79375 -0.00041534 -0.18393 -9.6243E-05 523.2670052746508 23.357 0.98446 21.804 20.991 21.976 -1.5532 23 9 3 0 0 0 0.7009 1 4023 4023 6.2058 0.47393 1 5677300 31509 4367 20995 21009 31118 31118 -0.0004922343014186481 NKVEIIKIFR 10 Unmodified _NKVEIIKIFR_ 0 0 0 REV__ENST00000587552.5_1_19:5708410-5719801:-|nuORF REV__ENST00000587552.5_1_19:5708410-5719801:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7758178710938 2 630.395348 1258.77614 0.40831 0.0002574 -1.0993 -0.00069298 -0.69097 -0.00043558 630.3930942716319 153.33 0.17567 153.33 153.2 153.37 0 7 4 2 0 0 0 0.91149 1 30706 30706 3.2813 2.9743 1 1333000 + 31510 19239 20996 21010 31119 31119 0.15710504144908555 NKVFKLKC 8 Unmodified _NKVFKLKC_ 0 0 0 ENST00000474392.1_1_7:39610244-39610328:+|nuORF ENST00000474392.1_1_7:39610244-39610328:+|nuORF ENST00000474392.1_1_7:39610244-39610328:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2699890136719 2 490.291505 978.568457 NaN NaN NaN NaN NaN NaN NaN 14.428 1 13.255 12.755 13.755 -1.173 0 0 0 0.21486 1 1950 1950 2.5775 0 1 31511 10256 20997 21011 31120 31120 0.07831598676068552 NKVPTMKNY 9 Unmodified _NKVPTMKNY_ 0 0 0 REV__ENSG00000139668|ENST00000298125|WDFY2 REV__ENSG00000139668|ENST00000298125|WDFY2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7825927734375 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 142.83 1 142.83 142.33 143.33 0 0 0 0 0.23508 1 28484 28484 11.64 0 1 + 31512 16533 20998 21012 31121 31121 0.015977855998698942 NKVSSSHIG 9 Unmodified _NKVSSSHIG_ 0 0 0 ENSG00000105849|ENST00000222567|POLR1F ENSG00000105849|ENST00000222567|POLR1F ENSG00000105849|ENST00000222567|POLR1F MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1652526855469 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 140.39 1 135.74 135.24 136.24 -4.6481 0 0 0 0.19622 1 27718 27718 0.96228 0.96228 1 31513 2348 20999 21013 31122 31122 0.01075426232296195 NKWKFFKGP 9 Unmodified _NKWKFFKGP_ 0 0 0 ENSG00000182674|ENST00000523207|KCNB2 ENSG00000182674|ENST00000523207|KCNB2 ENSG00000182674|ENST00000523207|KCNB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3255004882812 2 576.321651 1150.62875 NaN NaN NaN NaN NaN NaN NaN 137.72 1 133.08 132.58 133.58 -4.6413 0 0 0 0.19649 1 27186 27186 0.40827 0.38206 1 31514 6804 21000 21014 31123 31123 0.05946032330803064 NKWKHLLVG 9 Unmodified _NKWKHLLVG_ 0 0 0 REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2 REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77587890625 2 547.827101 1093.63965 NaN NaN NaN NaN NaN NaN NaN 25.089 1 23.555 23.055 24.055 -1.5342 0 0 0 0.1963 1 4110 4110 0.029283 0.023327 1 + 31515 13621 21001 21015 31124 31124 0.09657434705081869 NKWLKFVM 8 Unmodified _NKWLKFVM_ 0 0 0 tr|U7T5W5|U7T5W5_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00155PE=4SV=1 tr|U7T5W5|U7T5W5_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00155PE=4SV=1 tr|U7T5W5|U7T5W5_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00155PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2808227539062 2 533.29933 1064.58411 NaN NaN NaN NaN NaN NaN NaN 136.97 1 136.97 136.47 137.47 0 0 0 0 0.20896 1 27152 27152 18.135 5.8943 1 31516 26477 21002 21016 31125 31125 0.05439885193095506 NKWQRQGYIKY 11 Unmodified _NKWQRQGYIKY_ 0 0 0 REV__nc|ENSG00000164485|Q969J5-3|IL22RA2 REV__nc|ENSG00000164485|Q969J5-3|IL22RA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.39501953125 2 742.393867 1482.77318 NaN NaN NaN NaN NaN NaN NaN 178.04 1 173.25 172.75 173.75 -4.7898 0 0 0 0.23698 1 36423 36423 2.7352 0.45242 1 + 31517 24139 21003 21017 31126 31126 0.051106290201232696 NKWQRQGYIKY 11 Unmodified _NKWQRQGYIKY_ 0 0 0 REV__nc|ENSG00000164485|Q969J5-3|IL22RA2 REV__nc|ENSG00000164485|Q969J5-3|IL22RA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3917236328125 2 742.393867 1482.77318 NaN NaN NaN NaN NaN NaN NaN 149.2 1 144.07 143.57 144.57 -5.1204 0 0 0 0.2367 1 28906 28906 2.9952 0.26005 1 + 31518 24139 21003 21017 31127 31127 0.051106290201232696 NKWSFLQHRY 10 Unmodified _NKWSFLQHRY_ 0 0 0 REV__DDX60|p.I198L|1|0.31|ENSG00000137628|chr4:168306393-168306393|T/G|missense_variant REV__DDX60|p.I198L|1|0.31|ENSG00000137628|chr4:168306393-168306393|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2392578125 3 460.238678 1377.6942 NaN NaN NaN NaN NaN NaN NaN 64.695 1 61.412 60.912 61.912 -3.2832 0 0 0 2.8426 1 12149 12149 3.8763 0 1 + 31519 13659 21004 21018 31128 31128 0.02046401785855778 NKYEDEINKR 10 Unmodified _NKYEDEINKR_ 0 0 0 ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000016045;CON__Q5XQN5;CON__P48668;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q922U2;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;CON__P04259;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;CON__Q8VED5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;ENST00000413425.1_1_3:35258032-35258143:-|nuORF;CON__Q6IFZ6;ENST00000508125.1_1_5:122737431-122737524:-|nuORF;ENSG00000167768|ENST00000252244|KRT1;CON__P04264;ENST00000562317.1_1_16:78082520-78083381:-|nuORF ENSG00000170421|ENST00000692008|KRT8;ENSG00000167768|ENST00000252244|KRT1;ENST00000562317.1_1_16:78082520-78083381:-|nuORF ENSG00000170421|ENST00000692008|KRT8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2243347167969 3 436.889603 1307.64698 0.88688 0.00038747 -1.0283 -0.00044927 -0.14146 -6.1802E-05 436.8890917007887 24.701 0.72686 23.053 22.472 23.199 -1.6482 24 20 2 0 0 0 0.664 1 4315 4315 14.838 6.0861 1 707210 + 31520 658;5847;11312 21005 21019 31129 31129 0.005460777241751202 NKYKYYLC 8 Unmodified _NKYKYYLC_ 0 0 0 REV__AluSz6_dup43940|chr19:17814301-17814610:-|3.685936671004459|0.3287952390102888|3.49|483.0|2|1|sense REV__AluSz6_dup43940|chr19:17814301-17814610:-|3.685936671004459|0.3287952390102888|3.49|483.0|2|1|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7671508789062 2 547.770603 1093.52665 0.12578 6.8897E-05 -2.8487 -0.0015604 -2.7229 -0.0014916 548.2713062851824 144.12 0.168 139.06 138.97 139.14 -5.0671 6 4 2 0 0 0 0.76728 1 27800 27800 5.7604 0.86342 1 1042200 + 31521 13033 21006 21020 31130 31130 -0.016370018031238942 NKYWECEPDP 10 Unmodified _NKYWECEPDP_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 640.7670288085938 2 640.766245 1279.51794 NaN NaN NaN NaN NaN NaN NaN 166.39 1 161.44 160.94 161.94 -4.9484 0 0 0 0.22588 1 32599 32599 3.5965 0.31518 1 + 31522 17221 21007 21021 31131 31131 -0.11064020230287497 NLAEKLIGV 9 Unmodified _NLAEKLIGV_ 0 0 0 RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.3|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.722412109375 2 478.792392 955.570232 0.019933 9.5438E-06 0.019821 9.4901E-06 0.039754 1.9034E-05 478.7923298523771 135.73 0.84018 131.09 130.69 131.53 -4.6399 55 23 3 0 0 0 4.8487E-06 1 26797 26797 140.63 61.905 1 19784000 31523 6072 21008 21022 31132 31132 0.09066930965661868 NLAEKLIGV 9 Unmodified _NLAEKLIGV_ 0 0 0 RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.3|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7345275878906 2 478.792392 955.570232 0.21891 0.00010481 -0.075996 -3.6386E-05 0.14291 6.8424E-05 478.79230977658995 136.07 0.81982 131.24 130.81 131.63 -4.8307 57 22 3 0 0 0 0.019191 1 26154 26154 93.166 36.989 1 16106000 31524 6072 21008 21022 31133 31133 0.09066930965661868 NLAEKLIGV 9 Unmodified _NLAEKLIGV_ 0 0 0 RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.3|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant RALGAPB|p.D1147*|1|0.24|ENSG00000170471|chr20:38558354-38558355|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.792392 955.570232 0.056739 2.7166E-05 0.0067806 3.2465E-06 0.063519 3.0412E-05 478.7923629552753 136.08 0.80443 131.18 130.78 131.59 -4.8951 -0.06848 -3.5945E-05 NaN 140.63 58 22 3 NaN NaN NaN NaN 0 NaN NaN 0 15721000 31525 6072 21008 21022 0.09066930965661868 NLAHKTYSL 9 Unmodified _NLAHKTYSL_ 0 0 0 ENSG00000129315|ENST00000261900|CCNT1 ENSG00000129315|ENST00000261900|CCNT1 ENSG00000129315|ENST00000261900|CCNT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6982421875 2 523.785099 1045.55564 0.4399 0.00023041 -0.66378 -0.00034768 -0.22388 -0.00011727 523.7847679851074 43.622 0.34727 43.622 43.433 43.78 0 12 9 2 0 0 0 0.59658 1 8174 8174 35.612 11.592 1 906920 31526 3561 21009 21023 31134 31134 0.03468858817495857 NLAHSERPY 9 Unmodified _NLAHSERPY_ 0 0 0 REV__nc|ENSG00000187922|Q6JVE6|LCN10 REV__nc|ENSG00000187922|Q6JVE6|LCN10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.775146484375 2 543.76998 1085.52541 NaN NaN NaN NaN NaN NaN NaN 146.72 1 142.03 141.53 142.53 -4.6868 0 0 0 0.19638 1 29101 29101 0.12781 0 1 + 31527 19120 21010 21024 31135 31135 -0.013934998476770488 NLALEGRAEA 10 Unmodified _NLALEGRAEA_ 0 0 0 REV__ENST00000496385.5_1_22:26849136-26861668:-|nuORF REV__ENST00000496385.5_1_22:26849136-26861668:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2771606445312 2 522.277638 1042.54072 -0.48374 -0.00025264 0.17606 9.1953E-05 -0.30768 -0.00016069 522.2778379952547 99.287 0.729 95.018 94.682 95.411 -4.2692 33 20 2 0 0 0 0.4144 1 19014 19014 29.841 0.759 1 4186800 + 31528 22389 21011 21025 31136 31136 0.021153669495333816 NLALSHRGRQ 10 Unmodified _NLALSHRGRQ_ 0 0 0 ENST00000481087.1_1_1:241712984-241718974:+|nuORF;KMO|p.Q379Sfs*32|1|0.46|ENSG00000117009|chr1:241590042-241590043|-/T|frameshift_variant;KMO|p.K420Rfs*2|1|0.18|ENSG00000117009|chr1:241590256-241590256|A/-|frameshift_variant;nc|ENSG00000117009|O15229-3|KMO;nc|ENSG00000117009|O15229-2|KMO;KMO|p.V421Gfs*65|1|0.29|ENSG00000117009|chr1:241590255-241590256|-/A|frameshift_variant;ENSG00000117009|ENST00000366559|KMO;KMO|p.S95Vfs*29|1|0.13|ENSG00000117009|chr1:241551007-241551008|-/A|frameshift_variant;ENST00000484229.1_1_1:241695702-241713185:+|nuORF ENST00000481087.1_1_1:241712984-241718974:+|nuORF ENST00000481087.1_1_1:241712984-241718974:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3276977539062 2 576.323245 1150.63194 NaN NaN NaN NaN NaN NaN NaN 125.26 1 125.26 124.76 125.76 0 0 0 0 0.22588 1 24702 24702 11.495 0.67078 1 31529 2969 21012 21026 31137 31137 0.06264675437500955 NLAMAEGSK 9 Unmodified _NLAMAEGSK_ 0 0 0 REV__GALNT5|p.K257T|2|0.19|ENSG00000136542|chr2:157258852-157258852|A/C|missense_variant REV__GALNT5|p.K257T|2|0.19|ENSG00000136542|chr2:157258852-157258852|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2317199707031 2 460.728935 919.443317 0.13337 6.1449E-05 -1.8723 -0.00086264 -1.739 -0.0008012 460.7281129935601 32.08 0.67048 29.849 29.483 30.153 -2.2305 25 18 2 0 0 0 0.71527 1 5811 5811 25.399 8.457 1 571200 + 31530 16339 21013 21027 31138 31138 -0.019627382509725066 NLCFHFKW 8 Unmodified _NLCFHFKW_ 0 0 0 ENST00000328914.4_1_7:4810677-4810839:+|nuORF ENST00000328914.4_1_7:4810677-4810839:+|nuORF ENST00000328914.4_1_7:4810677-4810839:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7860107421875 2 547.765655 1093.51676 NaN NaN NaN NaN NaN NaN NaN 145.22 1 140.27 139.77 140.77 -4.9445 0 0 0 0.21486 1 28072 28072 5.2307 0 1 31531 8760 21014 21028 31139 31139 -0.026261450178481027 NLDAHWVG 8 Unmodified _NLDAHWVG_ 0 0 0 ENST00000496166.5_1_7:106505744-106505834:+|nuORF ENST00000496166.5_1_7:106505744-106505834:+|nuORF ENST00000496166.5_1_7:106505744-106505834:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 456.20416259765625 2 456.222134 910.429715 NaN NaN NaN NaN NaN NaN NaN 90.777 1 86.733 86.233 87.233 -4.0443 0 0 0 0.23487 1 17293 17293 0.063987 0 1 31532 10572 21015 21029 31140 31140 -0.02908227967907351 NLDEGLRNY 9 Unmodified _NLDEGLRNY_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7689819335938 2 547.26727 1092.51999 0.088051 4.8188E-05 0.34719 0.00019001 0.43524 0.00023819 547.2674203616516 73.226 0.42944 69.916 69.707 70.137 -3.3107 19 11 2 0 0 0 0.58804 1 14270 14270 13.906 0.39817 1 1620400 + 31533 19304 21016 21030 31141 31141 -0.022572234301151184 NLDEGLRNY 9 Unmodified _NLDEGLRNY_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7684326171875 2 547.26727 1092.51999 0.44961 0.00024606 -0.49239 -0.00026947 -0.042777 -2.341E-05 547.2668519530058 73.517 0.3925 69.923 69.723 70.116 -3.594 16 10 2 0 0 0 0.58804 1 13973 13973 13.906 2.2658 1 643840 + 31534 19304 21016 21030 31142 31142 -0.022572234301151184 NLDEGLRNY 9 Unmodified _NLDEGLRNY_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.26727 1092.51999 0.088051 4.8188E-05 0.34719 0.00019001 0.43524 0.00023819 547.2674203616516 73.226 0.42944 69.916 69.707 70.137 -3.3107 -0.0035654 0.00066092 NaN 13.906 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1620400 + 31535 19304 21016 21030 -0.022572234301151184 NLDEGLRNY 9 Unmodified _NLDEGLRNY_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 547.26727 1092.51999 0.44961 0.00024606 -0.49239 -0.00026947 -0.042777 -2.341E-05 547.2668519530058 73.517 0.3925 69.923 69.723 70.116 -3.594 0.0035654 -0.00025803 NaN 13.906 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 643840 + 31536 19304 21016 21030 -0.022572234301151184 NLDFQMEQY 9 Oxidation (M) _NLDFQM(Oxidation (M))EQY_ NLDFQM(1)EQY NLDFQM(44)EQY 0 0 1 ENSG00000168028|ENST00000301821|RPSA;ENST00000477325.1_1_3:39449144-39450287:+|nuORF ENSG00000168028|ENST00000301821|RPSA ENSG00000168028|ENST00000301821|RPSA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2803955078125 2 602.252971 1202.49139 1.0417 0.00062738 -0.4836 -0.00029125 0.55813 0.00033613 602.2527538260459 100.45 0.72118 96.286 96.011 96.732 -4.1594 28 20 2 0 0 0 0.15274 2 19785 19733;19785 43.772 25.401 1 2045600 31537 5871 21017 21031 31143;31144 31144 89 -0.10175709121585896 NLDKFGVSY 9 Unmodified _NLDKFGVSY_ 0 0 0 REV__ENSG00000077420|ENST00000376236|APBB1IP REV__ENSG00000077420|ENST00000376236|APBB1IP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.267333984375 2 521.763832 1041.51311 -0.39362 -0.00020538 1.7345 0.00090499 1.3409 0.00069961 522.2663073816833 87.553 0.49339 83.557 83.34 83.833 -3.9953 25 13 3 0 0 0 0.33512 1 16649 16649 4.7159 2.0847 1 2743700 + 31538 14365 21018 21032 31145 31145 -0.0059853631069017865 NLDLKGELY 9 Unmodified _NLDLKGELY_ 0 0 0 NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENSG00000110076|ENST00000265459|NRXN2;nc|ENSG00000110076|Q9P2S2-2|NRXN2 NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;nc|ENSG00000110076|Q9P2S2-2|NRXN2 nc|ENSG00000110076|Q9P2S2-2|NRXN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2686767578125 2 532.784764 1063.55498 0.065508 3.4902E-05 0.31877 0.00016984 0.38428 0.00020474 532.7849946312963 93.387 0.4808 89.396 89.175 89.656 -3.9907 24 13 2 0 0 0 0.6329 1 18248 18248 10.824 0.67336 1 2195000 31539 2561;12280 21019 21033 31146 31146 0.025740193778119647 NLDNIKKSF 9 Unmodified _NLDNIKKSF_ 0 0 0 tr|U7T4S8|U7T4S8_FUSNUUDP-N-acetylmuramate--L-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murCPE=3SV=1 tr|U7T4S8|U7T4S8_FUSNUUDP-N-acetylmuramate--L-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murCPE=3SV=1 tr|U7T4S8|U7T4S8_FUSNUUDP-N-acetylmuramate--L-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 110.57 1 106.15 105.65 106.65 -4.4231 0 0 0 0.23508 1 21792 21792 4.5289 0.58447 1 31540 26433 21020 21034 31147 31147 0.046171279889904326 NLDPLTETY 9 Unmodified _NLDPLTETY_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.276123046875 2 533.258579 1064.50261 0.1005 5.3592E-05 0.12904 6.8812E-05 0.22954 0.0001224 533.2585912041479 122.77 1.1164 122.77 122.27 123.38 0 104 31 5 0 0 0 0.012534 2 24300 24300;24312 99.755 10.801 1 87661000 31541 6292 21021 21035 31148;31149 31148 -0.02706563755782554 NLDPLTETY 9 Unmodified _NLDPLTETY_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2866821289062 2 533.258579 1064.50261 0.14981 7.9887E-05 0.024168 1.2888E-05 0.17398 9.2775E-05 533.2585376092094 127.62 1.4175 123 122.5 123.92 -4.6172 131 39 5 0 0 0 8.0306E-08 3 25104 25104;25107;25111 149.91 62.938 1 121950000 31542 6292 21021 21035 31150;31151;31152 31150 -0.02706563755782554 NLDPLTETY 9 Unmodified _NLDPLTETY_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2740478515625 2 533.258579 1064.50261 0.55165 0.00029417 -0.28154 -0.00015013 0.27011 0.00014404 533.2583729675152 127.84 1.3043 123.04 122.56 123.86 -4.7958 116 36 5 0 0 0 0.065852 1 24651 24651 42.232 41.551 1 97743000 31543 6292 21021 21035 31153 31153 -0.02706563755782554 NLDPLTETY 9 Unmodified _NLDPLTETY_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27880859375 2 533.258579 1064.50261 0.20662 0.00011018 0.036126 1.9265E-05 0.24275 0.00012945 533.258571611386 127.71 1.203 123.01 122.5 123.7 -4.6998 123 33 5 0 0 0 0.012534 1 24660 24660 99.755 21.027 1 105700000 31544 6292 21021 21035 31154 31154 -0.02706563755782554 NLDPLTETY 9 Unmodified _NLDPLTETY_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2658081054688 2 533.258579 1064.50261 NaN NaN NaN NaN NaN NaN NaN 128.47 1 123.73 123.23 124.23 -4.7408 0 0 0 0.13259 1 24720 24720 32.786 3.7041 1 31545 6292 21021 21035 31155 31155 -0.02706563755782554 NLDQATRVAY 10 Unmodified _NLDQATRVAY_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3331909179688 2 575.796195 1149.57784 -0.027835 -1.6027E-05 -0.29559 -0.0001702 -0.32342 -0.00018623 575.7959191961354 64.528 0.61799 64.528 64.237 64.855 0 44 17 4 0 0 0 5.0525E-05 1 12414 12414 135.72 67.638 1 19733000 31546 2764 21022 21036 31156 31156 0.009030384952893655 NLDQATRVAY 10 Unmodified _NLDQATRVAY_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.316162109375 2 575.796195 1149.57784 -0.049934 -2.8752E-05 -0.042594 -2.4526E-05 -0.092529 -5.3278E-05 575.7960743622849 67.695 0.58223 64.587 64.283 64.865 -3.1086 32 16 2 0 0 0 5.9283E-11 2 13127 13127;13163 154.75 96.074 1 16863000 31547 2764 21022 21036 31157;31158 31157 0.009030384952893655 NLDQATRVAY 10 Unmodified _NLDQATRVAY_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3286743164062 2 575.796195 1149.57784 0.41679 0.00023999 -1.1595 -0.00066763 -0.7427 -0.00042764 575.7953580662298 68.162 0.52315 64.626 64.341 64.864 -3.5362 34 14 3 0 0 0 0.00016552 3 12804 12793;12804;12845 125.18 57.101 1 15189000 31548 2764 21022 21036 31159;31160;31161 31160 0.009030384952893655 NLDQATRVAY 10 Unmodified _NLDQATRVAY_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3333129882812 2 575.796195 1149.57784 0.33557 0.00019322 -0.35614 -0.00020506 -0.020572 -1.1845E-05 575.7959441783944 67.988 0.70012 64.661 64.275 64.975 -3.3268 51 19 4 0 0 0 0.0023736 3 12852 12773;12852;12865 111.31 52.63 1 12644000 31549 2764 21022 21036 31162;31163;31164 31163 0.009030384952893655 NLDQKINL 8 Unmodified _NLDQKINL_ 0 0 0 AKAP11|p.N537Ifs*8|1|0.1|ENSG00000023516|chr13:42300350-42300350|A/-|frameshift_variant AKAP11|p.N537Ifs*8|1|0.1|ENSG00000023516|chr13:42300350-42300350|A/-|frameshift_variant AKAP11|p.N537Ifs*8|1|0.1|ENSG00000023516|chr13:42300350-42300350|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7380065917969 2 479.271824 956.529095 -0.091095 -4.3659E-05 0.26326 0.00012617 0.17216 8.2512E-05 479.27187592041366 70.398 0.73999 67.149 66.755 67.495 -3.2492 48 20 3 0 0 0 0.20134 1 13699 13699 71.134 18.865 1 8192400 31550 110 21023 21037 31165 31165 0.04909169926179402 NLDSARFRY 9 Unmodified _NLDSARFRY_ 0 0 0 ENSG00000111716|ENST00000350669|LDHB;ENST00000398295.3_1_2:85004811-85005102:-|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000166796|ENST00000541669|LDHC;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENSG00000166800|ENST00000280706|LDHAL6A;LDHAL6A|p.V234Sfs*7|1|0.31|ENSG00000166800|chr11:18476484-18476485|-/A|frameshift_variant ENSG00000111716|ENST00000350669|LDHB;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;ENSG00000166800|ENST00000280706|LDHAL6A ENST00000538451.1_1_11:18424358-18428825:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2107849121094 3 381.196478 1140.56761 -0.45797 -0.00017458 0.32274 0.00012303 -0.13523 -5.1549E-05 381.19659816109055 66.304 0.66393 66.304 65.963 66.627 0 46 18 3 0 0 0 0.11282 1 12828 12828 51.415 28.679 1 10923000 31551 2640;3846;5747 21024 21038 31166 31166 0.0029447556071318104 NLDSARFRY 9 Unmodified _NLDSARFRY_ 0 0 0 ENSG00000111716|ENST00000350669|LDHB;ENST00000398295.3_1_2:85004811-85005102:-|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000166796|ENST00000541669|LDHC;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENSG00000166800|ENST00000280706|LDHAL6A;LDHAL6A|p.V234Sfs*7|1|0.31|ENSG00000166800|chr11:18476484-18476485|-/A|frameshift_variant ENSG00000111716|ENST00000350669|LDHB;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;ENSG00000166800|ENST00000280706|LDHAL6A ENST00000538451.1_1_11:18424358-18428825:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 381.196478 1140.56761 -0.31183 -0.00011887 0.26422 0.00010072 -0.047611 -1.8149E-05 381.196556627049 69.503 0.81462 66.324 65.941 66.755 -3.1796 0.0094287 0.00021213 NaN 51.415 59 22 3 NaN NaN NaN NaN 0 NaN NaN 0 12186000 31552 2640;3846;5747 21024 21038 0.0029447556071318104 NLDSARFRY 9 Unmodified _NLDSARFRY_ 0 0 0 ENSG00000111716|ENST00000350669|LDHB;ENST00000398295.3_1_2:85004811-85005102:-|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000166796|ENST00000541669|LDHC;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENSG00000166800|ENST00000280706|LDHAL6A;LDHAL6A|p.V234Sfs*7|1|0.31|ENSG00000166800|chr11:18476484-18476485|-/A|frameshift_variant ENSG00000111716|ENST00000350669|LDHB;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;ENSG00000166800|ENST00000280706|LDHAL6A ENST00000538451.1_1_11:18424358-18428825:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 381.196478 1140.56761 0.37187 0.00014176 -0.49009 -0.00018682 -0.11821 -4.5063E-05 381.1962817601111 69.841 0.76308 66.262 65.862 66.625 -3.5798 -0.052755 -0.00065049 NaN 51.415 68 21 4 NaN NaN NaN NaN 0 NaN NaN 0 14050000 31553 2640;3846;5747 21024 21038 0.0029447556071318104 NLDSARFRY 9 Unmodified _NLDSARFRY_ 0 0 0 ENSG00000111716|ENST00000350669|LDHB;ENST00000398295.3_1_2:85004811-85005102:-|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000166796|ENST00000541669|LDHC;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENSG00000166800|ENST00000280706|LDHAL6A;LDHAL6A|p.V234Sfs*7|1|0.31|ENSG00000166800|chr11:18476484-18476485|-/A|frameshift_variant ENSG00000111716|ENST00000350669|LDHB;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;ENSG00000166800|ENST00000280706|LDHAL6A ENST00000538451.1_1_11:18424358-18428825:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 381.196478 1140.56761 -0.33292 -0.00012691 0.22598 8.6142E-05 -0.10695 -4.0768E-05 381.19654127451366 69.758 0.87243 66.368 65.912 66.784 -3.3903 0.053739 0.0001684 NaN 51.415 69 24 4 NaN NaN NaN NaN 0 NaN NaN 0 11298000 31554 2640;3846;5747 21024 21038 0.0029447556071318104 NLDSTTVAV 9 Unmodified _NLDSTTVAV_ 0 0 0 ENST00000471596.1_1_1:201459302-201465431:-|nuORF;ENST00000533188.1_1_1:201457913-201476204:-|nuORF;ENST00000458271.6_1_1:201456134-201465431:-|nuORF;ENST00000533402.5_1_1:201459302-201459740:-|nuORF;ENST00000532313.5_1_1:201457913-201465398:-|nuORF;ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1;ENST00000527662.5_1_1:201453843-201459740:-|nuORF ENST00000471596.1_1_1:201459302-201465431:-|nuORF ENST00000471596.1_1_1:201459302-201465431:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2400207519531 2 460.24019 918.465826 0.42721 0.00019662 -1.1031 -0.0005077 -0.6759 -0.00031108 460.23971209266887 75.905 0.55476 75.905 75.681 76.236 0 26 15 2 0 0 0 0.15889 1 14792 14792 26.995 22.279 1 2863600 31555 5193 21025 21039 31167 31167 0.0033318441827532297 NLDWSSACSC 10 Unmodified _NLDWSSACSC_ 0 0 0 ENSG00000274588|ENST00000611977|DGKK ENSG00000274588|ENST00000611977|DGKK ENSG00000274588|ENST00000611977|DGKK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7725219726562 2 543.204967 1084.39538 0.59283 0.00032203 -0.58129 -0.00031576 0.011547 6.2726E-06 543.2047417977601 105.68 0.45566 105.68 105.49 105.95 0 22 12 2 0 0 0 0.90598 1 20802 20802 5.7319 0 1 1884000 31556 8020 21026 21040 31168 31168 -0.14344180233320003 NLEEGKSYF 9 Unmodified _NLEEGKSYF_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.787841796875 2 543.758746 1085.50294 0.042314 2.3008E-05 -1.4171 -0.00077057 -1.3748 -0.00074756 543.7578141454372 81.497 0.31113 77.658 77.474 77.785 -3.8392 11 8 2 0 0 0 0.36931 1 15452 15452 27.629 3.6082 1 505540 31557 5053 21027 21041 31169 31169 -0.03639144035946629 NLEEILDPT 9 Unmodified _NLEEILDPT_ 0 0 0 ENST00000481894.1_1_1:115138166-115167938:-|nuORF ENST00000481894.1_1_1:115138166-115167938:-|nuORF ENST00000481894.1_1_1:115138166-115167938:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2670288085938 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 19.622 1 19.622 19.122 20.122 0 0 0 0 0.19687 1 3214 3214 8.1555 5.5243 1 31558 10385 21028 21042 31170 31170 -0.001302772387589357 NLEELNPV 8 Unmodified _NLEELNPV_ 0 0 0 REV__ENSG00000080200|ENST00000389622|CRYBG3 REV__ENSG00000080200|ENST00000389622|CRYBG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2459716796875 2 464.242732 926.470912 0.37814 0.00017555 -0.4012 -0.00018625 -0.023057 -1.0704E-05 464.24247104930464 120.03 1.0813 115.57 115.16 116.24 -4.467 68 30 3 0 0 0 8448 1 23167 23167 9.544 5.9569 1 12583000 + 31559 14406 21029 21043 31171 31171 0.004734882809088958 NLEEQVAA 8 Unmodified _NLEEQVAA_ 0 0 0 REV__ENSG00000186834|ENST00000332499|HEXIM1 REV__ENSG00000186834|ENST00000332499|HEXIM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2191162109375 2 437.219257 872.423961 -0.48688 -0.00021287 0.5538 0.00024213 0.06692 2.9259E-05 437.2194805166386 35.743 1.1014 33.349 32.915 34.016 -2.3938 62 30 3 0 0 0 0.44108 1 6659 6659 30.637 5.2372 1 3754500 + 31560 19056 21030 21044 31172 31172 -0.017353712702401936 NLEGNTSNL 9 Unmodified _NLEGNTSNL_ 0 0 0 REV__ENST00000442675.1_1_9:5041822-5041915:+|nuORF REV__ENST00000442675.1_1_9:5041822-5041915:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25238037109375 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 137.8 1 132.96 132.46 133.46 -4.84 0 0 0 0.20628 1 26551 26551 21.747 2.3076 1 + 31561 16162 21031 21045 31173 31173 -0.030568877298492225 NLEGNTSNL 9 Unmodified _NLEGNTSNL_ 0 0 0 REV__ENST00000442675.1_1_9:5041822-5041915:+|nuORF REV__ENST00000442675.1_1_9:5041822-5041915:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2327880859375 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 137.82 1 132.98 132.48 133.48 -4.84 0 0 0 0.22621 1 26555 26555 15.847 1.2655 1 + 31562 16162 21031 21045 31174 31174 -0.030568877298492225 NLEKEKLENS 10 Unmodified _NLEKEKLENS_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1;EHBP1|p.T756Qfs*17|1|0.44|ENSG00000115504|chr2:62949001-62949001|A/-|frameshift_variant ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2767333984375 2 602.314417 1202.61428 NaN NaN NaN NaN NaN NaN NaN 161.91 1 161.91 161.41 162.41 0 0 0 0 0.22588 1 32524 32524 8.7454 0.58988 1 31563 2859 21032 21046 31175 31175 0.02107870601344075 NLEQLVSA 8 Unmodified _NLEQLVSA_ 0 0 0 REV__ENSG00000197561|ENST00000263621|ELANE REV__ENSG00000197561|ENST00000263621|ELANE MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22882080078125 2 437.23745 872.460347 0.027454 1.2004E-05 0.019222 8.4044E-06 0.046676 2.0408E-05 437.2373976040042 89.631 0.74248 89.631 89.206 89.949 0 51 20 3 0 0 0 0.077776 1 17518 17518 81.89 0 1 10538000 + 31564 19347 21033 21047 31176 31176 0.019015056264720442 NLEQLVSA 8 Unmodified _NLEQLVSA_ 0 0 0 REV__ENSG00000197561|ENST00000263621|ELANE REV__ENSG00000197561|ENST00000263621|ELANE MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 437.23745 872.460347 0.027454 1.2004E-05 0.019222 8.4044E-06 0.046676 2.0408E-05 437.2373976040042 89.631 0.74248 89.631 89.206 89.949 0 0.060306 -9.8997E-06 NaN 81.89 51 20 3 NaN NaN NaN NaN 0 NaN NaN 0 10538000 + 31565 19347 21033 21047 0.019015056264720442 NLEQLVSA 8 Unmodified _NLEQLVSA_ 0 0 0 REV__ENSG00000197561|ENST00000263621|ELANE REV__ENSG00000197561|ENST00000263621|ELANE MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 437.23745 872.460347 0.1778 7.7741E-05 -0.33328 -0.00014572 -0.15548 -6.798E-05 437.2372474331148 93.71 0.80979 89.566 89.115 89.925 -4.1435 -0.0049711 -0.00031815 NaN 81.89 60 23 3 NaN NaN NaN NaN 0 NaN NaN 0 17346000 + 31566 19347 21033 21047 0.019015056264720442 NLERGAVVEV 10 Unmodified _NLERGAVVEV_ 0 0 0 SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant;ENSG00000174705|ENST00000311601|SH3PXD2B SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant SH3PXD2B|p.G814Afs*37|1|0.38|ENSG00000174705|chr5:172338664-172338664|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7908935546875 2 543.301113 1084.58767 0.57978 0.000315 -0.86958 -0.00047244 -0.2898 -0.00015745 543.3006695367463 76.542 0.6348 76.542 76.167 76.802 0 23 17 2 0 0 0 0.13246 1 14858 14858 51.63 13.454 1 1517600 31567 6362 21034 21048 31177 31177 0.048762265006644157 NLERLKNVAF 10 Unmodified _NLERLKNVAF_ 0 0 0 REV__nc|ENSG00000109762|Q9H3E2-2|SNX25 REV__nc|ENSG00000109762|Q9H3E2-2|SNX25 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.29638671875 2 602.345855 1202.67716 NaN NaN NaN NaN NaN NaN NaN 170.02 1 165.15 164.65 165.65 -4.873 0 0 0 0.22588 1 33625 33625 8.7454 0.58988 1 + 31568 15175 21035 21049 31178 31178 0.08392481180044342 NLESPITTS 9 Unmodified _NLESPITTS_ 0 0 0 ENSG00000179163|ENST00000374479|FUCA1 ENSG00000179163|ENST00000374479|FUCA1 ENSG00000179163|ENST00000374479|FUCA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2452087402344 2 481.245472 960.476391 0.19881 9.5676E-05 -0.36213 -0.00017427 -0.16332 -7.8598E-05 481.2452666262255 99.809 1.515 95.819 95.377 96.892 -3.9895 145 43 5 0 0 0 0.34411 2 19336 19336;19337 29.082 0 1 182930000 31569 6617 21036 21050 31179;31180 31179 -0.0054283292729451205 NLESSNSKY 9 Unmodified _NLESSNSKY_ 0 0 0 ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;CDC27|p.I404Sfs*15|1|0.44|ENSG00000004897|chr17:47142397-47142397|T/-|frameshift_variant ENST00000533415.5_1_17:45198303-45266605:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.281982421875 2 521.246003 1040.47745 0.77304 0.00040295 -0.34855 -0.00018168 0.42449 0.00022126 521.2456758955194 24.543 0.55053 22.895 22.649 23.199 -1.6482 48 15 5 0 0 0 0.33094 1 4292 4292 29.841 10.584 1 9265300 31570 979 21037 21051 31181 31181 -0.04116618558373375 NLESSNSKY 9 Unmodified _NLESSNSKY_ 0 0 0 ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;CDC27|p.I404Sfs*15|1|0.44|ENSG00000004897|chr17:47142397-47142397|T/-|frameshift_variant ENST00000533415.5_1_17:45198303-45266605:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.246003 1040.47745 0.22454 0.00011704 -0.054262 -2.8284E-05 0.17028 8.8759E-05 521.2459791297774 22.943 0.76686 22.943 22.679 23.446 0 0.024281 0.00015291 NaN 29.841 38 21 3 NaN NaN NaN NaN 0 NaN NaN 0 9906500 31571 979 21037 21051 -0.04116618558373375 NLESTMKTY 9 Unmodified _NLESTMKTY_ 0 0 0 ENSG00000198919|ENST00000361582|DZIP3;ENST00000495008.5_1_3:108373019-108406879:+|nuORF ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78955078125 2 543.760432 1085.50631 -0.0943 -5.1277E-05 -2.7798 -0.0015115 -2.8741 -0.0015628 544.2613341785964 81.479 0.13667 77.791 77.732 77.868 -3.6879 5 3 2 0 0 0 0.76312 1 15516 15516 11.495 6.264 1 953250 31572 7526 21038 21052 31182 31182 -0.033022172535766 NLETLDLNY 9 Unmodified _NLETLDLNY_ 0 0 0 nc|ENSG00000205213|Q9BXB1-2|LGR4;ENSG00000205213|ENST00000379214|LGR4;ENST00000308543.3_1_1:202245458-202272411:+|nuORF;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6 nc|ENSG00000205213|Q9BXB1-2|LGR4 nc|ENSG00000205213|Q9BXB1-2|LGR4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7893676757812 2 547.771854 1093.52915 0.30332 0.00016615 -0.77154 -0.00042263 -0.46822 -0.00025648 547.7714177669136 86.681 0.59415 82.731 82.401 82.995 -3.9503 39 16 3 0 0 0 0.62102 1 16521 16521 11.64 1.5664 1 5787100 31573 7633 21039 21053 31183 31183 -0.013868748644881634 NLFEDQNTL 9 Unmodified _NLFEDQNTL_ 0 0 0 nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;CSE1L|p.F397Lfs*5|1|0.27|ENSG00000124207|chr20:49075371-49075371|T/-|frameshift_variant nc|ENSG00000124207|P55060-4|CSE1L nc|ENSG00000124207|P55060-4|CSE1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.775390625 2 547.261653 1092.50875 0.30061 0.00016451 -0.24013 -0.00013141 0.060482 3.3099E-05 547.2614822664409 126.28 0.88112 121.69 121.29 122.17 -4.5984 55 24 3 0 0 0 0.022938 2 24891 24876;24891 89.401 28.838 1 8643400 31574 3301 21040 21054 31184;31185 31185 -0.03380045524272646 NLFEDQNTL 9 Unmodified _NLFEDQNTL_ 0 0 0 nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;CSE1L|p.F397Lfs*5|1|0.27|ENSG00000124207|chr20:49075371-49075371|T/-|frameshift_variant nc|ENSG00000124207|P55060-4|CSE1L nc|ENSG00000124207|P55060-4|CSE1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7879028320312 2 547.261653 1092.50875 0.28357 0.00015519 0.13463 7.3678E-05 0.4182 0.00022887 547.2616466053626 126.58 0.97826 121.78 121.32 122.3 -4.7958 54 27 3 0 0 0 0.04795 2 24277 24264;24277 71.922 35.416 1 6718200 31575 3301 21040 21054 31186;31187 31187 -0.03380045524272646 NLFEDQNTL 9 Unmodified _NLFEDQNTL_ 0 0 0 nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;CSE1L|p.F397Lfs*5|1|0.27|ENSG00000124207|chr20:49075371-49075371|T/-|frameshift_variant nc|ENSG00000124207|P55060-4|CSE1L nc|ENSG00000124207|P55060-4|CSE1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.788818359375 2 547.261653 1092.50875 0.26461 0.00014481 -0.021191 -1.1597E-05 0.24342 0.00013321 547.2615881476033 126.39 0.83234 121.69 121.32 122.15 -4.6998 56 22 3 0 0 0 0.36931 1 24349 24349 27.629 2.2295 1 5978400 31576 3301 21040 21054 31188 31188 -0.03380045524272646 NLFEDQNTL 9 Unmodified _NLFEDQNTL_ 0 0 0 nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;CSE1L|p.F397Lfs*5|1|0.27|ENSG00000124207|chr20:49075371-49075371|T/-|frameshift_variant nc|ENSG00000124207|P55060-4|CSE1L nc|ENSG00000124207|P55060-4|CSE1L MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 547.261653 1092.50875 0.26461 0.00014481 -0.021191 -1.1597E-05 0.24342 0.00013321 547.2615881476033 126.39 0.83234 121.69 121.32 122.15 -4.6998 0.017334 5.2826E-05 NaN 89.401 56 22 3 NaN NaN NaN NaN 0 NaN NaN 0 5978400 31577 3301 21040 21054 -0.03380045524272646 NLFHLDDPL 9 Unmodified _NLFHLDDPL_ 0 0 0 REV__ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant REV__ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7794799804688 2 542.277106 1082.53966 0.32775 0.00017773 -0.31005 -0.00016814 0.017699 9.5976E-06 542.2769154141596 116.64 1.1806 112.15 111.48 112.66 -4.486 103 33 4 0 0 0 0.52396 1 22963 22963 18.146 1.9972 1 10856000 + 31578 16474 21041 21055 31189 31189 0.0016915258061089844 NLFHLDDPL 9 Unmodified _NLFHLDDPL_ 0 0 0 REV__ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant REV__ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.277106 1082.53966 0.3453 0.00018725 -0.19036 -0.00010323 0.15494 8.4019E-05 542.2769336481775 116.61 1.0808 112.03 111.46 112.54 -4.5815 -0.046814 4.1735E-05 NaN 18.146 79 30 3 NaN NaN NaN NaN 0 NaN NaN 0 10057000 + 31579 16474 21041 21055 0.0016915258061089844 NLFHLDDPL 9 Unmodified _NLFHLDDPL_ 0 0 0 REV__ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant REV__ZGRF1|p.R2022Kfs*8|1|0.29|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.277106 1082.53966 0.57415 0.00031135 -0.4645 -0.00025189 0.10964 5.9458E-05 542.2768138529372 116.38 1.1937 112.02 111.39 112.58 -4.3585 -0.055194 -0.00025559 NaN 18.146 84 33 3 NaN NaN NaN NaN 0 NaN NaN 0 10364000 + 31580 16474 21041 21055 0.0016915258061089844 NLFKLEVRLL 10 Unmodified _NLFKLEVRLL_ 0 0 0 ENST00000475316.5_1_7:65439511-65446985:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB ENST00000475316.5_1_7:65439511-65446985:-|nuORF ENST00000475316.5_1_7:65439511-65446985:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76806640625 2 622.889898 1243.76524 NaN NaN NaN NaN NaN NaN NaN 161.66 1 156.47 155.97 156.97 -5.1878 0 0 0 0.22588 1 31374 31374 5.7319 1.5423 1 31581 6022 21042 21056 31190 31190 0.15311101770657842 NLFNGSHYL 9 Unmodified _NLFNGSHYL_ 0 0 0 nc|ENSG00000064933|P54277-4|PMS1;nc|ENSG00000064933|P54277-2|PMS1 nc|ENSG00000064933|P54277-4|PMS1 nc|ENSG00000064933|P54277-4|PMS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2642822265625 2 532.761623 1063.50869 0.089049 4.7442E-05 -0.18427 -9.8172E-05 -0.095221 -5.073E-05 532.7615507954048 129.47 0.44688 124.84 124.6 125.05 -4.6292 18 12 2 0 0 0 0.42844 1 25530 25530 24.021 4.7636 1 1241000 31582 12225 21043 21057 31191 31191 -0.020520007336017443 NLFNGSHYL 9 Unmodified _NLFNGSHYL_ 0 0 0 nc|ENSG00000064933|P54277-4|PMS1;nc|ENSG00000064933|P54277-2|PMS1 nc|ENSG00000064933|P54277-4|PMS1 nc|ENSG00000064933|P54277-4|PMS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.264404296875 2 532.761623 1063.50869 0.45884 0.00024445 -0.52402 -0.00027918 -0.065184 -3.4727E-05 532.7616135356612 129.64 0.24123 124.81 124.67 124.91 -4.8265 10 6 2 0 0 0 0.13708 1 24888 24888 46.021 8.047 1 700120 31583 12225 21043 21057 31192 31192 -0.020520007336017443 NLFRKEEYKEK 11 Unmodified _NLFRKEEYKEK_ 0 0 0 tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1 tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1 tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3980712890625 2 742.398815 1482.78308 NaN NaN NaN NaN NaN NaN NaN 83.678 1 79.979 79.479 80.479 -3.6985 0 0 0 0.23698 1 15977 15977 2.7352 0 1 31584 26510 21044 21058 31193 31193 0.06099772234847478 NLGVPVQHV 9 Unmodified _NLGVPVQHV_ 0 0 0 REV__nc|ENSG00000110422|Q9H422-2|HIPK3 REV__nc|ENSG00000110422|Q9H422-2|HIPK3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7802429199219 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 159.1 1 154.3 153.8 154.8 -4.7952 0 0 0 0.19638 1 31636 31636 0.40827 0 1 + 31585 15200 21045 21059 31194 31194 0.05220893508658264 NLGWFSEFS 9 Unmodified _NLGWFSEFS_ 0 0 0 REV__ENST00000222345.10_1_19:38698691-38698757:+|nuORF REV__ENST00000222345.10_1_19:38698691-38698757:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7841186523438 2 543.748182 1085.48181 NaN NaN NaN NaN NaN NaN NaN 141.31 1 141.31 140.81 141.81 0 0 0 0 0.23508 1 28147 28147 7.9102 1.187 1 + 31586 20034 21046 21060 31195 31195 -0.057511093448283646 NLHALIAEV 9 Unmodified _NLHALIAEV_ 0 0 0 REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27423095703125 2 490.282192 978.549831 0.10064 4.9344E-05 -0.51868 -0.0002543 -0.41803 -0.00020495 490.28191324386495 83.124 0.63454 79.516 79.127 79.762 -3.6079 27 17 2 0 0 0 0.40602 1 16177 16177 25.399 4.9457 1 2038100 + 31587 15249 21047 21061 31196 31196 0.05969760305845284 NLHFIDFRFFL 11 Unmodified _NLHFIDFRFFL_ 0 0 0 L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|109|2|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|109|2|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|109|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2634582519531 3 490.262712 1467.76631 NaN NaN NaN NaN NaN NaN NaN 71.076 1 67.496 66.996 67.996 -3.5798 0 0 0 0.22632 1 13401 13401 1.4551 0.1005 1 31588 12040 21048 21062 31197 31197 0.05113316139545532 NLHLKISRVR 10 Unmodified _NLHLKISRVR_ 0 0 0 ENST00000523290.5_1_8:93023196-93107415:-|nuORF;RUNX1T1|p.P286Sfs*57|1|0.04|ENSG00000079102|chr8:91991774-91991775|-/TAAGA|frameshift_variant;RUNX1T1|p.T371Qfs*8|1|0.34|ENSG00000079102|chr8:91986292-91986292|T/-|frameshift_variant;ENSG00000079102|ENST00000436581|RUNX1T1 ENST00000523290.5_1_8:93023196-93107415:-|nuORF ENST00000523290.5_1_8:93023196-93107415:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 618.7861328125 2 618.388388 1234.76222 0.64547 0.00039915 -2.815 -0.0017408 -2.1695 -0.0013416 618.3847491806738 163.4 0.20735 158.34 158.18 158.39 -5.0648 7 5 2 0 0 0 0.74994 1 31776 31776 5.7319 2.4505 1 5549600 31589 1589 21049 21063 31198 31198 0.15423271436497998 NLHMQTRRHKY 11 Unmodified _NLHMQTRRHKY_ 0 0 0 REV__ZNF831|p.T195M|1|0.33|ENSG00000124203|chr20:59191603-59191603|C/T|missense_variant REV__ZNF831|p.T195M|1|0.33|ENSG00000124203|chr20:59191603-59191603|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3917236328125 2 742.388593 1482.76263 NaN NaN NaN NaN NaN NaN NaN 68.713 1 68.713 68.213 69.213 0 0 0 0 0.2367 1 13290 13290 2.9952 1.6657 1 + 31590 25595 21050 21064 31199 31199 0.040563230940733774 NLIALIILFP 10 Unmodified _NLIALIILFP_ 0 0 0 tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1 tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1 tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1006164550781 3 376.245999 1125.71617 NaN NaN NaN NaN NaN NaN NaN 177.06 1 172.19 171.69 172.69 -4.8739 0 0 0 0.22588 1 35232 35232 0.77653 0.078866 1 31591 25907 21051 21065 31200 31200 0.15833813481708603 NLIFFGKLN 9 Unmodified _NLIFFGKLN_ 0 0 0 REV__ENSG00000173988|ENST00000595396|LRRC63 REV__ENSG00000173988|ENST00000595396|LRRC63 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2776489257812 2 533.30821 1064.60187 NaN NaN NaN NaN NaN NaN NaN 148.01 1 142.95 142.45 143.45 -5.0595 0 0 0 0.22962 1 28665 28665 14.838 3.198 1 + 31592 18384 21052 21066 31201 31201 0.07214923719629951 NLIGFVLRR 9 Unmodified _NLIGFVLRR_ 0 0 0 BLVRA|p.S44L|1|0.36|ENSG00000106605|chr7:43788022-43788022|C/T|missense_variant BLVRA|p.S44L|1|0.36|ENSG00000106605|chr7:43788022-43788022|C/T|missense_variant BLVRA|p.S44L|1|0.36|ENSG00000106605|chr7:43788022-43788022|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.793212890625 2 544.340375 1086.6662 0.32506 0.00017694 1.2671 0.00068973 1.5921 0.00086667 544.8440372474829 118.28 0.18189 118.28 118.15 118.33 0 5 4 2 0 0 0 0.87511 1 23296 23296 7.2892 5.8073 1 1088600 31593 323 21053 21067 31202 31202 0.12633123596424412 NLIHGGVRYL 10 Unmodified _NLIHGGVRYL_ 0 0 0 ENST00000587908.1_1_19:56832840-56833431:-|nuORF ENST00000587908.1_1_19:56832840-56833431:-|nuORF ENST00000587908.1_1_19:56832840-56833431:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21881103515625 3 381.220735 1140.64038 NaN NaN NaN NaN NaN NaN NaN 55.962 1 52.786 52.286 53.286 -3.1761 0 0 0 2.8426 1 10402 10402 12.228 12.164 1 31594 11565 21054 21068 31203 31203 0.07568229354137657 NLINEGTI 8 Unmodified _NLINEGTI_ 0 0 0 tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1 tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1 tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.228271484375 2 437.23745 872.460347 -0.26222 -0.00011465 0.023389 1.0227E-05 -0.23883 -0.00010443 437.2373698961391 83.16 0.82335 79.462 79.076 79.899 -3.6985 34 23 2 0 0 0 8448 1 15952 15952 0.62683 0 1 1600300 31595 25919 21055 21069 31204 31204 0.019015056264947816 NLINPFVDEFE 11 Unmodified _NLINPFVDEFE_ 0 0 0 REV__ENSG00000186675|ENST00000373359|MAGEE2 REV__ENSG00000186675|ENST00000373359|MAGEE2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 669.1264038085938 2 668.824618 1335.63468 NaN NaN NaN NaN NaN NaN NaN 163.35 1 158.56 158.06 159.06 -4.7898 0 0 0 0.23429 1 32557 32557 4.897 1.3005 1 + 31596 19047 21056 21070 31205 31205 -0.01970958738866102 NLIPHGLFQL 10 Unmodified _NLIPHGLFQL_ 0 0 0 REV__nc|ENSG00000166133|Q8IZ73-2|RPUSD2 REV__nc|ENSG00000166133|Q8IZ73-2|RPUSD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.332763671875 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 99.565 1 95.432 94.932 95.932 -4.1326 0 0 0 2.8426 1 19561 19561 1.0651 0.93733 1 + 31597 17827 21057 21071 31206 31206 0.08057997639662062 NLIRDRKYHLR 11 Unmodified _NLIRDRKYHLR_ 0 0 0 ENST00000479866.5_1_12:48143124-48152369:-|nuORF;ENST00000482843.5_1_12:48142600-48152369:-|nuORF;nc|ENSG00000079337|O95398-2|RAPGEF3;nc|ENSG00000079337|O95398-3|RAPGEF3;ENSG00000079337|ENST00000449771|RAPGEF3 ENST00000479866.5_1_12:48143124-48152369:-|nuORF ENST00000479866.5_1_12:48143124-48152369:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3924560546875 2 742.433858 1482.85316 NaN NaN NaN NaN NaN NaN NaN 166.69 1 161.74 161.24 162.24 -4.9484 0 0 0 0.23698 1 32691 32691 2.7352 0.45242 1 31598 1593 21058 21072 31207 31207 0.13105115413986823 NLIRFGVLY 9 Unmodified _NLIRFGVLY_ 0 0 0 REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7783203125 2 547.821484 1093.62842 NaN NaN NaN NaN NaN NaN NaN 146.39 1 141.7 141.2 142.2 -4.6868 0 0 0 0.19656 1 29032 29032 0.12781 0 1 + 31599 24923 21059 21073 31208 31208 0.08534612610947079 NLIRRLQKY 9 Unmodified _NLIRRLQKY_ 0 0 0 ENSG00000114388|ENST00000232501|NPRL2;ENST00000467294.1_1_3:50385039-50385481:-|nuORF;ENST00000461020.5_1_3:50385039-50386041:-|nuORF;ENST00000487632.5_1_3:50385039-50386411:-|nuORF ENSG00000114388|ENST00000232501|NPRL2 ENSG00000114388|ENST00000232501|NPRL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2966918945312 2 602.369664 1202.72478 NaN NaN NaN NaN NaN NaN NaN 85.825 1 81.875 81.375 82.375 -3.9503 0 0 0 0.23508 1 16328 16328 4.756 1.4747 1 31600 2787 21060 21074 31209 31209 0.13152180170868633 NLIVVTASY 9 Unmodified _NLIVVTASY_ 0 0 0 TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;TG|p.E2744Vfs*20|1|0.07|ENSG00000042832|chr8:133134716-133134717|GG/-|frameshift_variant;ENSG00000042832|ENST00000220616|TG TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2759704589844 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 106.81 1 102.4 101.9 102.9 -4.4121 0 0 0 0.22962 1 20492 20492 14.838 2.3067 1 31601 1205 21061 21075 31210 31210 0.04846938211710494 NLKDHEVNL 9 Unmodified _NLKDHEVNL_ 0 0 0 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2843627929688 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 84.828 1 81.164 80.664 81.664 -3.6641 0 0 0 0.23508 1 16580 16580 10.824 0 1 31602 26254 21062 21076 31211 31211 0.019316534665676954 NLKFMATQI 9 Unmodified _NLKFMATQI_ 0 0 0 ENSG00000162733|ENST00000367921|DDR2 ENSG00000162733|ENST00000367921|DDR2 ENSG00000162733|ENST00000367921|DDR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2716064453125 2 533.291702 1064.56885 NaN NaN NaN NaN NaN NaN NaN 130.83 1 125.99 125.49 126.49 -4.8355 0 0 0 0.23508 1 25119 25119 12.532 0 1 31603 5361 21063 21077 31212 31212 0.03914973605265004 NLKKEKVVLIK 11 Unmodified _NLKKEKVVLIK_ 0 0 0 REV__ENST00000512687.5_1_5:68530748-68551520:+|nuORF REV__ENST00000512687.5_1_5:68530748-68551520:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 656.44091796875 2 656.439755 1310.86496 NaN NaN NaN NaN NaN NaN NaN 167.68 1 162.89 162.39 163.39 -4.7898 0 0 0 0.22632 1 33848 33848 0.03141 0 1 + 31604 22561 21064 21078 31213 31213 0.22195919384603258 NLKKFRYVKLI 11 Unmodified _NLKKFRYVKLI_ 0 0 0 ENST00000496441.5_1_2:174219691-174228743:+|nuORF;nc|ENSG00000144354|Q9BWT1-4|CDCA7;nc|ENSG00000144354|Q9BWT1-3|CDCA7;nc|ENSG00000144354|Q9BWT1|CDCA7;nc|ENSG00000144354|Q9BWT1-6|CDCA7;ENSG00000144354|ENST00000306721|CDCA7 ENST00000496441.5_1_2:174219691-174228743:+|nuORF ENST00000496441.5_1_2:174219691-174228743:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 711.241943359375 2 711.453197 1420.89184 NaN NaN NaN NaN NaN NaN NaN 164.15 1 164.15 163.65 164.65 0 0 0 0 0.2367 1 33160 33160 2.9952 1.5133 1 31605 4547 21065 21079 31214 31214 0.19823027995789744 NLKKHLCLHR 10 Unmodified _NLKKHLCLHR_ 0 0 0 ENSG00000204947|ENST00000378061|ZNF425 ENSG00000204947|ENST00000378061|ZNF425 ENSG00000204947|ENST00000378061|ZNF425 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 631.4002685546875 2 631.369141 1260.72373 0.41228 0.0002603 2.7679 0.0017476 3.1802 0.0020079 631.369331289254 164.76 0.20456 164.76 164.6 164.81 0 6 5 2 0 0 0 0.91149 1 33349 33349 1.1933 0 1 10658000 31606 7622 21066 21080 31215 31215 0.10379642530324418 NLKKKIYI 8 Unmodified _NLKKKIYI_ 0 0 0 tr|U7SZJ2|U7SZJ2_FUSNUDUF454domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00772PE=4SV=1 tr|U7SZJ2|U7SZJ2_FUSNUDUF454domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00772PE=4SV=1 tr|U7SZJ2|U7SZJ2_FUSNUDUF454domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00772PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 510.30706787109375 2 510.334227 1018.6539 NaN NaN NaN NaN NaN NaN NaN 156.15 1 151.37 150.87 151.87 -4.7791 0 0 0 0.21486 1 31048 31048 5.7604 0 1 31607 26298 21067 21081 31216 31216 0.14532087133352434 NLKQKWHLG 9 Unmodified _NLKQKWHLG_ 0 0 0 RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2228698730469 3 375.217214 1122.62981 -0.0005081 -1.9065E-07 1.5984 0.00059974 1.5979 0.00059955 375.2177034156855 24.149 0.52024 22.615 22.434 22.955 -1.5342 32 14 3 0 0 0 0.81359 1 3969 3969 11.495 1.3441 1 2740600 31608 25621 21068 21082 31217 31217 0.07340246699709496 NLKRFRKQL 9 Unmodified _NLKRFRKQL_ 0 0 0 nc|ENSG00000131044|Q3SXZ7-3|TTLL9;nc|ENSG00000131044|Q3SXZ7-2|TTLL9;ENSG00000131044|ENST00000535842|TTLL9 nc|ENSG00000131044|Q3SXZ7-3|TTLL9 nc|ENSG00000131044|Q3SXZ7-3|TTLL9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2963256835938 2 601.877656 1201.74076 0.34429 0.00020722 0.44238 0.00026626 0.78667 0.00047348 601.8781746779683 140.65 0.17349 135.79 135.74 135.91 -4.8678 6 4 2 0 0 0 0.87258 1 27125 27125 4.3292 0 1 4658000 31609 3657 21069 21083 31218 31218 0.14795886407796388 NLKRLLLFY 9 Unmodified _NLKRLLLFY_ 0 0 0 ENST00000356415.5_1_1:112255069-112255237:+|nuORF ENST00000356415.5_1_1:112255069-112255237:+|nuORF ENST00000356415.5_1_1:112255069-112255237:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2561645507812 2 590.366059 1178.71756 NaN NaN NaN NaN NaN NaN NaN 85.737 1 82.073 81.573 82.573 -3.6641 0 0 0 0.23508 1 16761 16761 4.756 1.1595 1 31610 8968 21070 21084 31219 31219 0.13535447570484394 NLKRLLRKKV 10 Unmodified _NLKRLLRKKV_ 0 0 0 ENST00000361908.7_1_3:193374935-193376676:+|nuORF ENST00000361908.7_1_3:193374935-193376676:+|nuORF ENST00000361908.7_1_3:193374935-193376676:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 634.1528930664062 2 634.437881 1266.86121 0.42917 0.00027228 -3.8652 -0.0024522 -3.436 -0.0021799 634.4358305718544 165.53 0.2412 160.55 160.35 160.59 -4.9811 10 6 3 0 0 0 0.91149 1 32363 32363 0.35063 0 1 8909500 31611 9038 21071 21085 31220 31220 0.23845294401394312 NLKRLLRKKVL 11 Unmodified _NLKRLLRKKVL_ 0 0 0 ENST00000361908.7_1_3:193374935-193376676:+|nuORF ENST00000361908.7_1_3:193374935-193376676:+|nuORF ENST00000361908.7_1_3:193374935-193376676:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 690.9828491210938 2 690.979913 1379.94527 NaN NaN NaN NaN NaN NaN NaN 176.69 1 176.69 176.19 177.19 0 0 0 0 0.22632 1 36604 36604 0.094841 0 1 31612 9038 21072 21086 31221 31221 0.27049825498306745 NLKRPTGMIL 10 Unmodified _NLKRPTGMIL_ 0 0 0 ENST00000409592.7_1_2:225761057-225796351:-|nuORF ENST00000409592.7_1_2:225761057-225796351:-|nuORF ENST00000409592.7_1_2:225761057-225796351:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2181396484375 3 381.561993 1141.66415 -0.97437 -0.00037178 -1.0161 -0.0003877 -1.9905 -0.00075949 381.5614977300736 24.23 0.38093 22.376 22.191 22.572 -1.8534 25 10 3 0 0 0 0.87285 1 3929 3929 8.4443 8.4443 1 1946900 31613 9565 21073 21087 31222 31222 0.09898326796314905 NLKSGGSV 8 Unmodified _NLKSGGSV_ 0 0 0 REV__tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1 REV__tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2118225097656 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 41.901 1 41.901 41.401 42.401 0 0 0 0 0.2396 1 7825 7825 0 0 1 + 31614 25030 21074 21088 31223 31223 0.018129672835470956 NLLIRVAKRP 10 Unmodified _NLLIRVAKRP_ 0 0 0 REV__DCLK2|p.G261Wfs*2|1|0.34|ENSG00000170390|chr4:150193155-150193156|-/T|frameshift_variant REV__DCLK2|p.G261Wfs*2|1|0.34|ENSG00000170390|chr4:150193155-150193156|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2529296875 2 590.387857 1178.76116 0.48138 0.0002842 0.2136 0.0001261 0.69498 0.00041031 590.3865357495264 163.35 0.13718 158.28 158.22 158.35 -5.0648 5 3 2 0 0 0 0.91149 1 31764 31764 1.4819 0 1 4612100 + 31615 13644 21075 21089 31224 31224 0.17893057067612972 NLLKTGAHRN 10 Unmodified _NLLKTGAHRN_ 0 0 0 ENST00000483871.6_1_20:42089765-42089846:+|nuORF ENST00000483871.6_1_20:42089765-42089846:+|nuORF ENST00000483871.6_1_20:42089765-42089846:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.23150634765625 3 375.215873 1122.62579 -0.036466 -1.3683E-05 -0.436 -0.00016359 -0.47246 -0.00017728 375.21574064796795 41.253 0.37842 38.714 38.488 38.866 -2.5398 17 10 2 0 0 0 0.52989 1 7368 7368 1.9064 1.8981 1 945110 31616 10424 21076 21090 31225 31225 0.06938157205991047 NLLLPRRSI 9 Unmodified _NLLLPRRSI_ 0 0 0 REV__ENSG00000076924|ENST00000358368|XAB2 REV__ENSG00000076924|ENST00000358368|XAB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2765502929688 2 541.345658 1080.67676 NaN NaN NaN NaN NaN NaN NaN 138.04 1 133.4 132.9 133.9 -4.6413 0 0 0 0.23508 1 27249 27249 7.9102 0 1 + 31617 14353 21077 21091 31226 31226 0.139651062508392 NLLPKLHIV 9 Unmodified _NLLPKLHIV_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6978759765625 2 523.839677 1045.6648 0.18231 9.5499E-05 -0.11021 -5.7731E-05 0.072099 3.7768E-05 523.839497022388 137.7 0.91206 137.7 137.27 138.18 0 79 25 5 0 0 0 0.12295 1 27332 27332 64.236 46.101 1 38427000 31618 7703 21078 21092 31227 31227 0.14379489507655308 NLLPKLHIV 9 Unmodified _NLLPKLHIV_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 349.90185546875 3 349.56221 1045.6648 -0.22707 -7.9374E-05 0.1593 5.5684E-05 -0.067773 -2.3691E-05 349.5622145637808 141.66 1.1808 137.01 136.4 137.58 -4.6493 116 33 5 0 0 0 0.055281 2 27916 27916;28097 67.187 50.074 1 61300000 31619 7703 21078 21092 31228;31229 31228 0.14379489507655308 NLLPKLHIV 9 Unmodified _NLLPKLHIV_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6837768554688 2 523.839677 1045.6648 -0.12364 -6.4767E-05 0.033059 1.7317E-05 -0.090581 -4.745E-05 523.8395492830842 141.65 1.147 137.01 136.4 137.55 -4.6493 100 32 4 0 0 0 0.096847 1 28012 28012 71.134 46.46 1 54131000 31620 7703 21078 21092 31230 31230 0.14379489507655308 NLLPKLHIV 9 Unmodified _NLLPKLHIV_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6786499023438 2 523.839677 1045.6648 -0.43402 -0.00022736 0.33393 0.00017492 -0.1001 -5.2435E-05 523.8398188334668 142.02 1.1326 137 136.45 137.58 -5.0261 101 32 5 0 0 0 0.031632 1 27362 27362 81.613 56.939 1 42379000 31621 7703 21078 21092 31231 31231 0.14379489507655308 NLLPKLHIV 9 Unmodified _NLLPKLHIV_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6998291015625 2 523.839677 1045.6648 0.32941 0.00017256 -0.25791 -0.0001351 0.071493 3.7451E-05 523.8394949244412 141.88 1.2704 137.01 136.53 137.8 -4.8678 102 35 4 0 0 0 0.026338 1 27375 27375 88.904 52.859 1 38067000 31622 7703 21078 21092 31232 31232 0.14379489507655308 NLLPKLHIV 9 Unmodified _NLLPKLHIV_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 349.56221 1045.6648 -0.40825 -0.00014271 0.39362 0.00013759 -0.014629 -5.1136E-06 349.5622960261137 141.92 1.3048 137.05 136.4 137.7 -4.8677 0.01717 0.00030356 NaN 67.187 113 36 4 NaN NaN NaN NaN 0 NaN NaN 0 48175000 31623 7703 21078 21092 0.14379489507655308 NLLPYKIAY 9 Unmodified _NLLPYKIAY_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7913818359375 2 547.815867 1093.61718 0.13911 7.6209E-05 -4.1856 -0.0022929 -4.0465 -0.0022167 548.3174745437931 146.66 0.2037 141.54 141.48 141.68 -5.1108 7 5 2 0 0 0 0.66537 1 28376 28376 8.5933 0.68312 1 1130400 31624 12546 21079 21093 31233 31233 0.07411790516812289 NLLYLIKTLI 10 Unmodified _NLLYLIKTLI_ 0 0 0 REV__ENSG00000158623|ENST00000425248|COPG2 REV__ENSG00000158623|ENST00000425248|COPG2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.29736328125 2 602.389199 1202.76385 NaN NaN NaN NaN NaN NaN NaN 163.06 1 158.27 157.77 158.77 -4.7898 0 0 0 0.22588 1 32476 32476 10.074 0 1 + 31625 17339 21080 21094 31234 31234 0.17057467681911476 NLMEQPIKV 9 Oxidation (M) _NLM(Oxidation (M))EQPIKV_ NLM(1)EQPIKV NLM(150)EQPIKV 0 0 1 ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7883911132812 2 544.294442 1086.57433 0.6085 0.0003312 -0.66919 -0.00036424 -0.060695 -3.3036E-05 544.2941546589748 76.888 1.2579 76.888 76.344 77.602 0 112 35 4 0 0 0 5.0834E-10 1 14920 14920 151.48 101.93 1 38331000 31626 6310 21081 21095 31235 31235 91 0.03450652397077647 NLMEQPIKV 9 Oxidation (M) _NLM(Oxidation (M))EQPIKV_ NLM(1)EQPIKV NLM(85)EQPIKV 0 0 1 ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.76953125 2 544.294442 1086.57433 0.24417 0.0001329 -0.14697 -7.9997E-05 0.097198 5.2904E-05 544.2944125205602 80.352 1.3047 76.842 76.083 77.388 -3.5102 110 36 4 0 0 0 0.036328 1 15653 15653 84.522 61.864 1 25333000 31627 6310 21081 21095 31236 31236 91 0.03450652397077647 NLMEQPIKV 9 Oxidation (M) _NLM(Oxidation (M))EQPIKV_ NLM(1)EQPIKV NLM(140)EQPIKV 0 0 1 ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7730102539062 2 544.294442 1086.57433 0.0010759 5.8559E-07 0.06581 3.582E-05 0.066886 3.6406E-05 544.2945210441779 80.706 1.3636 76.867 76.18 77.543 -3.8392 112 38 4 0 0 0 9.1971E-06 1 15355 15355 139.78 90.228 1 20593000 31628 6310 21081 21095 31237 31237 91 0.03450652397077647 NLMEQPIKV 9 Oxidation (M) _NLM(Oxidation (M))EQPIKV_ NLM(1)EQPIKV NLM(97)EQPIKV 0 0 1 ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7922973632812 2 544.294442 1086.57433 -0.095583 -5.2025E-05 0.017964 9.7775E-06 -0.077619 -4.2248E-05 544.294545510486 80.426 1.3884 76.739 76.169 77.558 -3.6879 128 39 5 0 0 0 0.033674 1 15351 15351 96.936 65.667 1 33112000 31629 6310 21081 21095 31238 31238 91 0.03450652397077647 NLMIRGVVLFF 11 Unmodified _NLMIRGVVLFF_ 0 0 0 INSIG2|p.A198Cfs*19|1|0.22|ENSG00000125629|chr2:118107138-118107139|-/T|frameshift_variant;ENSG00000125629|ENST00000245787|INSIG2 INSIG2|p.A198Cfs*19|1|0.22|ENSG00000125629|chr2:118107138-118107139|-/T|frameshift_variant INSIG2|p.A198Cfs*19|1|0.22|ENSG00000125629|chr2:118107138-118107139|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22772216796875 3 436.921409 1307.7424 0.21081 9.2106E-05 0.82216 0.00035922 1.033 0.00045132 437.2558652865725 28.196 0.44679 28.196 27.905 28.352 0 15 12 2 0 0 0 0.66234 1 4957 4957 0.50596 0 1 686780 31630 3368 21082 21096 31239 31239 0.10083759381518576 NLMITHVT 8 Unmodified _NLMITHVT_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.N1250Ifs*3|2|0.09|ENSG00000121741|chr13:20082954-20082954|A/-|frameshift_variant;ZMYM2|p.P337Tfs*41|1|0.29|ENSG00000121741|chr13:20003004-20003005|-/A|frameshift_variant;ZMYM2|p.K757Nfs*31|1|0.58|ENSG00000121741|chr13:20036883-20036883|A/-|frameshift_variant;ZMYM2|p.K1044Rfs*33|2|0.56|ENSG00000121741|chr13:20064537-20064537|A/-|frameshift_variant ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.170166015625 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 93.829 1 93.829 93.329 94.329 0 0 0 0 0.21486 1 18367 18367 1.4819 0 1 31631 3189 21083 21097 31240 31240 0.018144425083505666 NLMPSISSI 9 Unmodified _NLMPSISSI_ 0 0 0 REV__ENSG00000205327|ENST00000548615|OR6C68 REV__ENSG00000205327|ENST00000548615|OR6C68 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2531433105469 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 154.79 1 149.54 149.04 150.04 -5.2526 0 0 0 0.22251 1 30015 30015 16.942 2.3606 1 + 31632 19586 21084 21098 31241 31241 0.013190054429401243 NLMPTLITY 9 Unmodified _NLMPTLITY_ 0 0 0 REV__ENSG00000162727|ENST00000366476|OR2M5;REV__ENSG00000187701|ENST00000460972|OR2T27;REV__ENSG00000203663|ENST00000641771|OR2L2 REV__ENSG00000187701|ENST00000460972|OR2T27 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.282470703125 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 124.13 1 124.13 123.63 124.63 0 0 0 0 0.23508 1 24473 24473 11.64 0 1 + 31633 17525;19104;19339 21085 21099 31242 31242 0.027921515111302142 NLNEKINHL 9 Unmodified _NLNEKINHL_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21;RAD21|p.M287Yfs*6|1|0.04|ENSG00000164754|chr8:116856244-116856245|-/A|frameshift_variant;ENST00000414579.2_1_X:100056605-100057001:+|nuORF ENSG00000164754|ENST00000297338|RAD21;ENST00000414579.2_1_X:100056605-100057001:+|nuORF ENSG00000164754|ENST00000297338|RAD21 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.787841796875 2 547.80128 1093.58801 NaN NaN NaN NaN NaN NaN NaN 50.062 1 50.062 49.562 50.562 0 0 0 0 0.17061 1 9472 9472 27.629 8.3718 1 31634 5565;9603 21086 21100 31243 31243 0.04495646220493654 NLNKEKNNL 9 Unmodified _NLNKEKNNL_ 0 0 0 tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1 tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1 tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.795166015625 2 543.798737 1085.58292 NaN NaN NaN NaN NaN NaN NaN 140.71 1 135.84 135.34 136.34 -4.8678 0 0 0 0.23277 1 27135 27135 13.906 0.86358 1 31635 26300 21087 21101 31244 31244 0.043553423578941874 NLNNFALN 8 Unmodified _NLNNFALN_ 0 0 0 REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1 REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2352600097656 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 87.864 1 83.869 83.369 84.369 -3.9953 0 0 0 0.21039 1 16733 16733 16.942 0 1 + 31636 25158 21088 21102 31245 31245 -0.006559587964261482 NLNRLLPWLL 10 Unmodified _NLNRLLPWLL_ 0 0 0 REV__ENST00000481894.1_1_1:115138166-115167938:-|nuORF REV__ENST00000481894.1_1_1:115138166-115167938:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 626.2274169921875 2 626.38224 1250.74993 NaN NaN NaN NaN NaN NaN NaN 167.75 1 162.96 162.46 163.46 -4.7898 0 0 0 0.22588 1 33867 33867 6.2058 0 1 + 31637 22182 21089 21103 31246 31246 0.13458234973472827 NLPAWQNN 8 Unmodified _NLPAWQNN_ 0 0 0 REV__ENST00000546616.1_1_14:105609034-105613077:-|nuORF REV__ENST00000546616.1_1_14:105609034-105613077:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73114013671875 2 478.732866 955.451179 NaN NaN NaN NaN NaN NaN NaN 12.328 1 12.328 11.828 12.828 0 0 0 0 0.2396 1 1711 1711 0.0082765 0 1 + 31638 18922 21090 21104 31247 31247 -0.02832842939199054 NLPDVVQP 8 Unmodified _NLPDVVQP_ 0 0 0 MINK1|p.D1112Gfs*17|1|0.14|ENSG00000141503|chr17:4895797-4895798|-/G|frameshift_variant;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;ENSG00000141503|ENST00000355280|MINK1 MINK1|p.D1112Gfs*17|1|0.14|ENSG00000141503|chr17:4895797-4895798|-/G|frameshift_variant MINK1|p.D1112Gfs*17|1|0.14|ENSG00000141503|chr17:4895797-4895798|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 441.7422790527344 2 441.239993 880.465432 0.12428 5.4837E-05 0.1524 6.7245E-05 0.27668 0.00012208 441.23988252547286 86.64 1.2504 86.64 86.076 87.327 0 82 35 3 0 0 0 0.88085 1 17042 17042 1.4551 0 1 2528800 31639 4375 21091 21105 31248 31248 0.020418094890942484 NLPHHEPI 8 Unmodified _NLPHHEPI_ 0 0 0 ENSG00000115297|ENST00000233638|TLX2;TLX2|p.A98Rfs*16|2|0.18|ENSG00000115297|chr2:74515092-74515092|G/-|frameshift_variant ENSG00000115297|ENST00000233638|TLX2 ENSG00000115297|ENST00000233638|TLX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7437438964844 2 478.751059 955.487565 -0.12535 -6.001E-05 1.0641 0.00050944 0.93875 0.00044943 478.7513011639039 71.52 0.67051 68.271 68.062 68.732 -3.2492 23 18 2 0 0 0 0.66265 1 13891 13891 18.135 0 1 713990 31640 2843 21092 21106 31249 31249 0.008040339575131839 NLPMLLLP 8 Unmodified _NLPMLLLP_ 0 0 0 REV__KMT2D|p.V3089Wfs*30|1|0.12|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant REV__KMT2D|p.V3089Wfs*30|1|0.12|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 455.775146484375 2 455.775157 909.53576 NaN NaN NaN NaN NaN NaN NaN 141.06 1 136.19 135.69 136.69 -4.8678 0 0 0 0.19298 1 27216 27216 0.68139 0.42991 1 + 31641 23731 21093 21107 31250 31250 0.07737391553212092 NLPNFNRS 8 Unmodified _NLPNFNRS_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1;GSPT2|p.K564Nfs*13|1|0.21|ENSG00000189369|chrX:51745313-51745313|A/-|frameshift_variant;ENSG00000189369|ENST00000340438|GSPT2 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2436828613281 2 481.246141 960.477728 NaN NaN NaN NaN NaN NaN NaN 102.3 1 98.277 97.777 98.777 -4.0212 0 0 0 0.22847 1 19658 19658 1.7423 0 1 31642 2183 21094 21108 31251 31251 -0.0040915404786119325 NLPPLTQDPA 10 Unmodified _NLPPLTQDPA_ 0 0 0 REV__ENST00000537834.5_1_19:40745726-40771198:-|nuORF REV__ENST00000537834.5_1_19:40745726-40771198:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2861938476562 2 533.282389 1064.55022 0.060089 3.2045E-05 -4.2333 -0.0022576 -4.1732 -0.0022255 533.7835142615625 102.34 0.24533 98.158 98.062 98.307 -4.1861 9 6 2 0 0 0 0.871 1 20138 20138 6.2058 0 1 1491500 + 31643 14970 21095 21109 31252 31252 0.020531352350417365 NLPQVKMHIPP 11 Unmodified _NLPQVKMHIPP_ 0 0 0 REV__ENSG00000144724|ENST00000474889|PTPRG REV__ENSG00000144724|ENST00000474889|PTPRG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 636.9780883789062 2 637.357908 1272.70126 0.41745 0.00026606 1.9353 0.0012335 2.3528 0.0014995 637.8627540830846 173.02 0.099518 173.02 172.94 173.04 0 4 2 2 0 0 0 0.92792 1 35743 35743 13.042 6.8367 1 6462500 + 31644 16797 21096 21110 31253 31253 0.07581998342061524 NLPRHRAV 8 Unmodified _NLPRHRAV_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7868957519531 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 125.99 1 125.99 125.49 126.49 0 0 0 0 0.21486 1 24860 24860 12.532 2.3482 1 31645 7465 21097 21111 31254 31254 0.07466537696939213 NLPVIPIEG 9 Unmodified _NLPVIPIEG_ 0 0 0 REV__CCDC81|p.L134Ffs*34|1|0.38|ENSG00000149201|chr11:86392636-86392637|-/T|frameshift_variant REV__CCDC81|p.L134Ffs*34|1|0.38|ENSG00000149201|chr11:86392636-86392637|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0394592285156 3 317.855171 950.543683 -0.48127 -0.00015298 0.52499 0.00016687 0.043719 1.3896E-05 317.85515770279807 33.732 0.42894 33.732 33.544 33.972 0 20 11 2 0 0 0 0.88413 1 6176 6176 1.0715 0 1 546250 + 31646 13304 21098 21112 31255 31255 0.06643242074335376 NLPVIPIEG 9 Unmodified _NLPVIPIEG_ 0 0 0 REV__CCDC81|p.L134Ffs*34|1|0.38|ENSG00000149201|chr11:86392636-86392637|-/T|frameshift_variant REV__CCDC81|p.L134Ffs*34|1|0.38|ENSG00000149201|chr11:86392636-86392637|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 317.855171 950.543683 -0.69244 -0.00022009 0.48565 0.00015437 -0.20679 -6.5729E-05 317.85530600483935 36.14 0.38684 33.746 33.557 33.943 -2.3938 0.021058 -6.429E-05 NaN 1.0715 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 671140 + 31647 13304 21098 21112 0.06643242074335376 NLPVIPIEG 9 Unmodified _NLPVIPIEG_ 0 0 0 REV__CCDC81|p.L134Ffs*34|1|0.38|ENSG00000149201|chr11:86392636-86392637|-/T|frameshift_variant REV__CCDC81|p.L134Ffs*34|1|0.38|ENSG00000149201|chr11:86392636-86392637|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 317.855171 950.543683 -0.39374 -0.00012515 0.68471 0.00021764 0.29097 9.2486E-05 317.8551864228338 35.974 0.56434 33.697 33.42 33.984 -2.2766 -0.028224 0.00012553 NaN 1.0715 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 384920 + 31648 13304 21098 21112 0.06643242074335376 NLPYFLRYINR 11 Unmodified _NLPYFLRYINR_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.265380859375 3 490.273499 1467.79867 NaN NaN NaN NaN NaN NaN NaN 143.43 1 138.54 138.04 139.04 -4.8982 0 0 0 0.22632 1 27684 27684 0.11104 0 1 31649 3477 21099 21113 31256 31256 0.08348103542562058 NLPYFVRR 8 Unmodified _NLPYFVRR_ 0 0 0 ENSG00000149792|ENST00000279242|MRPL49;ENST00000528529.1_1_11:64889784-64893341:+|nuORF;ENST00000532671.1_1_11:64892850-64893341:+|nuORF;ENST00000534078.1_1_11:64889784-64893341:+|nuORF ENSG00000149792|ENST00000279242|MRPL49 ENSG00000149792|ENST00000279242|MRPL49 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2708129882812 2 532.803626 1063.5927 -0.22134 -0.00011793 1.7373 0.00092564 1.516 0.00080771 533.3058583750283 62.449 0.54971 62.449 62.073 62.622 0 20 15 2 0 0 0 8448 1 11941 11941 0.30703 0.24304 1 3131900 31650 4811 21100 21114 31257 31257 0.06344575153934784 NLQEKRDY 8 Unmodified _NLQEKRDY_ 0 0 0 tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 533.269813 1064.52507 0.5306 0.00028295 0.069236 3.6922E-05 0.59983 0.00031987 533.2695966285997 35.409 0.4142 33.157 32.985 33.399 -2.2527 23 11 3 0 0 0 0.69031 1 6273 6273 15.847 0 1 1294900 31651 26283 21101 21115 31258 31258 -0.004609195675357114 NLQELVSA 8 Unmodified _NLQELVSA_ 0 0 0 REV__ENST00000574210.5_1_17:2594901-2597328:-|nuORF REV__ENST00000574210.5_1_17:2594901-2597328:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2164611816406 2 437.23745 872.460347 -0.11577 -5.0618E-05 0.27728 0.00012124 0.16151 7.0619E-05 437.2375762875755 93.47 1.0026 89.626 89.158 90.16 -3.844 64 28 3 0 0 0 0.17438 1 17941 17941 78.149 0 1 16848000 + 31652 13454 21102 21116 31259 31259 0.019015056264720442 NLQFEYID 8 Unmodified _NLQFEYID_ 0 0 0 ENSG00000076356|ENST00000367033|PLXNA2 ENSG00000076356|ENST00000367033|PLXNA2 ENSG00000076356|ENST00000367033|PLXNA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26171875 2 521.248015 1040.48148 -0.20815 -0.0001085 0.5303 0.00027642 0.32215 0.00016792 521.2481900839063 137.75 0.98152 133.11 132.59 133.57 -4.6413 76 27 4 0 0 0 0.64512 1 27214 27214 19.257 2.1441 1 20464000 31653 1538 21103 21117 31260 31260 -0.03714529064677663 NLQFYILQI 9 Unmodified _NLQFYILQI_ 0 0 0 ENST00000174618.4_1_17:2304187-2304379:-|nuORF ENST00000174618.4_1_17:2304187-2304379:-|nuORF ENST00000174618.4_1_17:2304187-2304379:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3273315429688 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 169.06 1 164.27 163.77 164.77 -4.7898 0 0 0 0.13725 1 34215 34215 11.749 7.0333 1 31654 8080 21104 21118 31261 31261 0.06935175545527272 NLRFEIWFRRR 11 Unmodified _NLRFEIWFRRR_ 0 0 0 ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4 ENST00000563969.5_1_16:67314567-67322708:+|nuORF ENST00000563969.5_1_16:67314567-67322708:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 531.6726684570312 3 531.635542 1591.8848 NaN NaN NaN NaN NaN NaN NaN 148.55 1 143.84 143.34 144.34 -4.7095 0 0 0 0.22632 1 29500 29500 0.026206 0 1 31655 7237 21105 21119 31262 31262 0.11253108167875325 NLRKHEII 8 Unmodified _NLRKHEII_ 0 0 0 ZNF99|p.T719N|1|0.22|ENSG00000213973|chr19:22757753-22757753|G/T|missense_variant;ZNF99|p.T635N|1|0.28|ENSG00000213973|chr19:22758005-22758005|G/T|missense_variant ZNF99|p.T719N|1|0.22|ENSG00000213973|chr19:22757753-22757753|G/T|missense_variant ZNF99|p.T719N|1|0.22|ENSG00000213973|chr19:22757753-22757753|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 511.807373046875 2 511.808908 1021.60326 NaN NaN NaN NaN NaN NaN NaN 170.01 1 165.08 164.58 165.58 -4.9295 0 0 0 0.22647 1 33599 33599 0.68139 0 1 31656 26639 21106 21120 31263 31263 0.09332557808374986 NLRRRQWRKTR 11 Unmodified _NLRRRQWRKTR_ 0 0 0 nc|ENSG00000175513|Q3SY00-2|TSGA10IP;ENSG00000175513|ENST00000532620|TSGA10IP nc|ENSG00000175513|Q3SY00-2|TSGA10IP nc|ENSG00000175513|Q3SY00-2|TSGA10IP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.407958984375 2 785.469098 1568.92364 NaN NaN NaN NaN NaN NaN NaN 171.15 1 166.23 165.73 166.73 -4.9149 0 0 0 0.23698 1 33867 33867 0.30703 0 1 31657 6416 21107 21121 31264 31264 0.16193833522288514 NLRRWFMERNF 11 Unmodified _NLRRWFMERNF_ 0 0 0 REV__ENST00000566833.1_1_15:43477651-43481519:+|nuORF REV__ENST00000566833.1_1_15:43477651-43481519:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6792602539062 3 523.601622 1567.78304 NaN NaN NaN NaN NaN NaN NaN 145.77 1 141.08 140.58 141.58 -4.6868 0 0 0 0.23698 1 28897 28897 1.2148 0.10508 1 + 31658 17893 21108 21122 31265 31265 0.021854937538591912 NLRSKKLFAK 10 Unmodified _NLRSKKLFAK_ 0 0 0 REV__ENSG00000256683|ENST00000243644|ZNF350 REV__ENSG00000256683|ENST00000243644|ZNF350 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.290771484375 2 602.879865 1203.74518 0.55869 0.00033682 -0.30562 -0.00018425 0.25307 0.00015257 603.3824120503589 163.76 0.20087 158.69 158.56 158.76 -5.0648 6 5 2 0 0 0 0.91049 1 31886 31886 8.7454 2.5396 1 3918400 + 31659 19866 21109 21123 31266 31266 0.15145350830675852 NLRSLMCFS 9 Unmodified _NLRSLMCFS_ 0 0 0 REV__ENSG00000182111|ENST00000420713|ZNF716 REV__ENSG00000182111|ENST00000420713|ZNF716 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5648498535156 3 357.5089 1069.50487 -0.37448 -0.00013388 -0.22281 -7.9656E-05 -0.59729 -0.00021354 357.5087633362116 14.164 0.20603 14.164 14.073 14.279 0 15 5 4 0 0 0 0.88158 1 2075 2075 3.8763 3.6405 1 2221200 + 31660 18756 21110 21124 31267 31267 -0.02710129823344687 NLRTAAPSPLL 11 Unmodified _NLRTAAPSPLL_ 0 0 0 REV__ENST00000467873.1_1_3:183882564-183882771:+|nuORF REV__ENST00000467873.1_1_3:183882564-183882771:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3233032226562 2 576.840405 1151.66626 -0.02431 -1.4023E-05 2.1576 0.0012446 2.1333 0.0012306 576.8419473142072 68.029 0.58576 64.92 64.626 65.212 -3.1086 24 16 2 0 0 0 0.90723 1 13157 13157 16.149 1.3108 1 3661300 + 31661 21989 21111 21125 31268 31268 0.0964907880577357 NLRTDIPCY 9 Unmodified _NLRTDIPCY_ 0 0 0 REV__nc|ENSG00000104299|Q9NV88-3|INTS9 REV__nc|ENSG00000104299|Q9NV88-3|INTS9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.779541015625 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 154.68 1 149.43 148.93 149.93 -5.2526 0 0 0 0.23277 1 29993 29993 13.906 0.86358 1 + 31662 14912 21112 21126 31269 31269 -0.020390912968423436 NLRVIKLIL 9 Unmodified _NLRVIKLIL_ 0 0 0 nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.3074951171875 2 541.376426 1080.7383 NaN NaN NaN NaN NaN NaN NaN 172.75 1 172.75 172.25 173.25 0 0 0 0 0.23508 1 35682 35682 4.3292 0 1 31663 4622 21113 21127 31270 31270 0.20116037950151622 NLRVQSESDSH 11 Unmodified _NLRVQSESDSH_ 0 0 0 REV__ENST00000485727.5_1_3:123675165-123675318:-|nuORF REV__ENST00000485727.5_1_3:123675165-123675318:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 636.2681274414062 2 636.302372 1270.59019 NaN NaN NaN NaN NaN NaN NaN 166.63 1 166.63 166.13 167.13 0 0 0 0 0.22943 1 33962 33962 8.7454 3.0136 1 + 31664 22225 21114 21128 31271 31271 -0.03427969832318922 NLSAKKGR 8 Unmodified _NLSAKKGR_ 0 0 0 REV__ENST00000346183.7_1_16:68217221-68224676:+|nuORF REV__ENST00000346183.7_1_16:68217221-68224676:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22760009765625 2 437.266876 872.519199 NaN NaN NaN NaN NaN NaN NaN 110.65 1 106.22 105.72 106.72 -4.4231 0 0 0 0.23487 1 21801 21801 0.063987 0 1 + 31665 20753 21115 21129 31272 31272 0.07784026711476599 NLSHQLGF 8 Unmodified _NLSHQLGF_ 0 0 0 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.237548828125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 61.179 1 57.939 57.439 58.439 -3.2395 0 0 0 0.21486 1 11449 11449 8.5933 0 1 + 31666 17988 21116 21130 31273 31273 0.00036345066200738074 NLSINSLI 8 Unmodified _NLSINSLI_ 0 0 0 REV__TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant REV__TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2164611816406 2 437.255643 872.496732 0.36367 0.00015902 -0.75502 -0.00033014 -0.39135 -0.00017112 437.2552932227091 75.87 0.48534 75.87 75.611 76.096 0 21 13 2 0 0 0 0.14223 1 14730 14730 54.774 0 1 2217200 + 31667 15407 21117 21131 31274 31274 0.05538382523195651 NLSINSLI 8 Unmodified _NLSINSLI_ 0 0 0 REV__TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant REV__TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 437.255643 872.496732 0.36367 0.00015902 -0.75502 -0.00033014 -0.39135 -0.00017112 437.2552932227091 75.87 0.48534 75.87 75.611 76.096 0 0.1678 -0.00046432 NaN 54.774 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2217200 + 31668 15407 21117 21131 0.05538382523195651 NLSINSLI 8 Unmodified _NLSINSLI_ 0 0 0 REV__TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant REV__TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 437.255643 872.496732 -0.25107 -0.00010978 0.1169 5.1116E-05 -0.13417 -5.8666E-05 437.25563621806776 79.326 0.60337 75.65 75.267 75.87 -3.676 -0.051763 0.00029819 NaN 54.774 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2185900 + 31669 15407 21117 21131 0.05538382523195651 NLSLISYVI 9 Unmodified _NLSLISYVI_ 0 0 0 nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2 nc|ENSG00000173698|Q8IZP9-9|ADGRG2 nc|ENSG00000173698|Q8IZP9-9|ADGRG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.1705627441406 3 341.202459 1020.58555 -0.26359 -8.9936E-05 -0.14268 -4.8682E-05 -0.40626 -0.00013862 341.2023174013168 65.234 1.0072 62.187 61.869 62.876 -3.047 69 29 4 0 0 0 0.49624 1 12763 12763 1.2148 0 1 20579000 31670 6306 21118 21132 31275 31275 0.07607797762852897 NLSWVCSWA 9 Unmodified _NLSWVCSWA_ 0 0 0 REV__DCAF4L1|p.A189V|1|0.28|ENSG00000182308|chr4:41982358-41982358|C/T|missense_variant REV__DCAF4L1|p.A189V|1|0.28|ENSG00000182308|chr4:41982358-41982358|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2745361328125 2 533.244752 1064.47495 -0.028593 -1.5247E-05 0.25228 0.00013453 0.22368 0.00011928 533.7450599490227 103.33 0.77972 99.141 98.941 99.721 -4.1861 32 22 2 0 0 0 0.84208 1 20397 20397 7.2892 0 1 1171600 + 31671 13640 21119 21133 31276 31276 -0.0547074549701847 NLSYEKRLE 9 Unmodified _NLSYEKRLE_ 0 0 0 ENST00000524026.1_1_8:10692103-10697380:-|nuORF ENST00000524026.1_1_8:10692103-10697380:-|nuORF ENST00000524026.1_1_8:10692103-10697380:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.33251953125 2 576.306395 1150.59824 NaN NaN NaN NaN NaN NaN NaN 139.95 1 139.95 139.45 140.45 0 0 0 0 0.23508 1 27837 27837 10.824 0.75 1 31672 10874 21120 21134 31277 31277 0.028962091551193225 NLTAYKPKYF 10 Unmodified _NLTAYKPKYF_ 0 0 0 ENSG00000089048|ENST00000617257|ESF1 ENSG00000089048|ENST00000617257|ESF1 ENSG00000089048|ENST00000617257|ESF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7765502929688 2 622.837331 1243.66011 NaN NaN NaN NaN NaN NaN NaN 163.59 1 158.8 158.3 159.3 -4.7898 0 0 0 0.22588 1 32623 32623 9.3831 1.473 1 31673 1746 21121 21135 31278 31278 0.04802560574216841 NLTDDPIQ 8 Unmodified _NLTDDPIQ_ 0 0 0 REV__ZNF844|p.K335Sfs*21|2|0.23|ENSG00000223547|chr19:12076120-12076120|A/-|frameshift_variant REV__ZNF844|p.K335Sfs*21|2|0.23|ENSG00000223547|chr19:12076120-12076120|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22296142578125 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 143.73 1 143.73 143.23 144.23 0 0 0 0 0.21171 1 28691 28691 15.847 0 1 + 31674 19714 21122 21136 31279 31279 -0.026113886158100286 NLTDNILNY 9 Unmodified _NLTDNILNY_ 0 0 0 REV__nc|ENSG00000100271|O95922-4|TTLL1 REV__nc|ENSG00000100271|O95922-4|TTLL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2747192382812 2 540.272021 1078.52949 0.23568 0.00012733 0.85505 0.00046196 1.0907 0.00058929 540.2724756894271 64.015 0.55724 61.017 60.697 61.255 -2.9975 35 15 3 0 0 0 0.46796 1 12381 12381 29.082 0 1 4188500 + 31675 14682 21123 21137 31280 31280 -0.0066345514460408594 NLTDNVMI 8 Unmodified _NLTDNVMI_ 0 0 0 nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2324523925781 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 155.65 1 150.87 150.37 151.37 -4.7791 0 0 0 0.23664 1 30940 30940 3.2813 0 1 31676 4019 21124 21138 31281 31281 -0.014418541082022784 NLTEKDSI 8 Unmodified _NLTEKDSI_ 0 0 0 REV__tr|U7SP24|U7SP24_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01702PE=4SV=1 REV__tr|U7SP24|U7SP24_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01702PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2401428222656 2 460.24019 918.465826 0.42721 0.00019662 -1.1031 -0.0005077 -0.6759 -0.00031108 460.23971209266887 75.905 0.55476 75.905 75.681 76.236 0 26 15 2 0 0 0 8448 1 14743 14743 8.966 4.489 1 2863600 + 31677 24995 21125 21139 31282 31282 0.0033318441828669165 NLTEKDSI 8 Unmodified _NLTEKDSI_ 0 0 0 REV__tr|U7SP24|U7SP24_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01702PE=4SV=1 REV__tr|U7SP24|U7SP24_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01702PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2314453125 2 460.24019 918.465826 -0.11156 -5.1345E-05 2.1086 0.00097047 1.997 0.00091912 460.2399173802921 79.692 0.91512 75.887 75.406 76.321 -3.8048 36 25 3 0 0 0 8448 1 15089 15089 6.3914 0 1 3091600 + 31678 24995 21125 21139 31283 31283 0.0033318441828669165 NLTEKDSI 8 Unmodified _NLTEKDSI_ 0 0 0 REV__tr|U7SP24|U7SP24_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01702PE=4SV=1 REV__tr|U7SP24|U7SP24_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01702PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2311706542969 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 79.635 1 75.958 75.458 76.458 -3.676 0 0 0 0.15004 1 15175 15175 6.3914 0 1 + 31679 24995 21125 21139 31284 31284 0.0033318441828669165 NLTENAGYY 9 Unmodified _NLTENAGYY_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.280517578125 2 522.735271 1043.45599 0.54929 0.00028713 -0.22108 -0.00011557 0.3282 0.00017156 522.735022848829 46.944 0.49678 46.944 46.661 47.158 0 21 13 2 0 0 0 0.81703 1 8859 8859 14.838 14.838 1 1110800 31680 5053 21126 21140 31285 31285 -0.06400003587077663 NLTLGNHKW 9 Unmodified _NLTLGNHKW_ 0 0 0 REV__FSTL4|p.R284H|1|0.44|ENSG00000053108|chr5:133249453-133249453|C/T|missense_variant REV__FSTL4|p.R284H|1|0.44|ENSG00000053108|chr5:133249453-133249453|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2620849609375 2 541.790715 1081.56688 0.16741 9.0702E-05 -1.867 -0.0010115 -1.6996 -0.00092084 542.2935883668212 148.81 0.20972 143.65 143.54 143.75 -5.1557 6 5 2 0 0 0 0.74858 1 28824 28824 12.241 1.4411 1 1626700 + 31681 23552 21127 21141 31286 31286 0.029356809116507065 NLTNDIVE 8 Unmodified _NLTNDIVE_ 0 0 0 REV__ENSG00000124772|ENST00000244751|CPNE5 REV__ENSG00000124772|ENST00000244751|CPNE5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2471923828125 2 459.232364 916.450176 -0.10245 -4.7047E-05 0.69417 0.00031879 0.59173 0.00027174 459.2326866303073 77.331 1.5773 73.868 72.888 74.465 -3.4633 85 44 3 0 0 0 0.36038 1 15120 15120 34.102 3.8776 1 22902000 + 31682 15793 21128 21142 31287 31287 -0.011391020987502998 NLTVQFKPPPG 11 Unmodified _NLTVQFKPPPG_ 0 0 0 REV__ENST00000560311.1_1_14:24634973-24635402:+|nuORF REV__ENST00000560311.1_1_14:24634973-24635402:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.21832275390625 3 399.892396 1196.65536 -0.32998 -0.00013195 0.026102 1.0438E-05 -0.30387 -0.00012152 399.8924137667426 71.703 1.4177 68.454 68.028 69.446 -3.2492 96 39 5 0 0 0 0.79428 1 14102 14102 4.4062 1.0865 1 10415000 + 31683 19653 21129 21143 31288 31288 0.06489676431465341 NLTYYLVLWQR 11 Unmodified _NLTYYLVLWQR_ 0 0 0 INSRR|p.P883Lfs*74|1|0.27|ENSG00000027644|chr1:156844551-156844551|G/-|frameshift_variant;INSRR|p.L920Cfs*37|2|0.34|ENSG00000027644|chr1:156844261-156844261|C/-|frameshift_variant;ENSG00000027644|ENST00000368195|INSRR INSRR|p.P883Lfs*74|1|0.27|ENSG00000027644|chr1:156844551-156844551|G/-|frameshift_variant INSRR|p.P883Lfs*74|1|0.27|ENSG00000027644|chr1:156844551-156844551|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2716064453125 3 490.269755 1467.78744 NaN NaN NaN NaN NaN NaN NaN 120.84 1 116.31 115.81 116.81 -4.5221 0 0 0 0.22632 1 23820 23820 0.11104 0 1 31684 1146 21130 21144 31289 31289 0.0722528144840453 NLVEGTYTF 9 Unmodified _NLVEGTYTF_ 0 0 0 ENST00000485551.5_1_1:35906621-35936502:-|nuORF;KIAA0319L|p.W910Gfs*10|1|0.3|ENSG00000142687|chr1:35442957-35442957|A/-|frameshift_variant;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L;nc|ENSG00000142687|Q8IZA0-3|KIAA0319L ENST00000485551.5_1_1:35906621-35936502:-|nuORF ENST00000485551.5_1_1:35906621-35936502:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.270751953125 2 522.25584 1042.49713 0.0095316 4.9779E-06 0.044157 2.3061E-05 0.053689 2.8039E-05 522.2557831140094 70.478 0.59629 70.478 70.135 70.732 0 44 16 3 0 0 0 0.80521 1 13700 13700 10.824 1.4765 1 12002000 31685 4439 21131 21145 31290 31290 -0.022422425476179342 NLVKEEID 8 Unmodified _NLVKEEID_ 0 0 0 REV__tr|U7SSX4|U7SSX4_FUSNUDUF3102domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01534PE=4SV=1 REV__tr|U7SSX4|U7SSX4_FUSNUDUF3102domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01534PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2351379394531 2 480.25584 958.497126 0.21202 0.00010182 -3.3841 -0.0016252 -3.1721 -0.0015234 480.25565866228993 36.744 0.85037 34.407 34.061 34.911 -2.3375 61 23 4 0 0 0 0.64227 1 6451 6451 19.439 0.18201 1 2353500 + 31686 25073 21132 21146 31291 31291 0.01621757452392103 NLVKLAFLL 9 Unmodified _NLVKLAFLL_ 0 0 0 REV__ENST00000405142.1_1_16:4744898-4745177:+|nuORF REV__ENST00000405142.1_1_16:4744898-4745177:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.1919860839844 3 344.226827 1029.65865 NaN NaN NaN NaN NaN NaN NaN 29.075 1 27.079 26.579 27.579 -1.9962 0 0 0 0.19623 1 4931 4931 0.029283 0 1 + 31687 17997 21133 21147 31292 31292 0.14500971276152086 NLVLIRKGPA 10 Unmodified _NLVLIRKGPA_ 0 0 0 REV__ENSG00000151657|ENST00000379562|KIN REV__ENSG00000151657|ENST00000379562|KIN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2684326171875 2 540.848033 1079.68151 -0.21773 -0.00011776 -4.1577 -0.0022487 -4.3754 -0.0023664 540.8442923323418 109.7 0.13586 105.33 105.24 105.38 -4.3776 5 3 2 0 0 0 0.90091 1 21610 21610 6.2058 2.9245 1 392980 + 31688 17077 21134 21148 31293 31293 0.14485990393609427 NLVVERYS 8 Unmodified _NLVVERYS_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2657775878906 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 100.92 1 96.758 96.258 97.258 -4.1594 0 0 0 0.22638 1 19840 19840 1.7423 1.4908 1 + 31689 19577 21135 21149 31294 31294 0.02332883409144415 NLVVERYS 8 Unmodified _NLVVERYS_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2664794921875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 101 1 96.701 96.201 97.201 -4.297 0 0 0 0.22638 1 19324 19324 1.7423 0 1 + 31690 19577 21135 21149 31295 31295 0.02332883409144415 NLVVERYS 8 Unmodified _NLVVERYS_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26641845703125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 101.2 1 96.905 96.405 97.405 -4.297 0 0 0 0.18481 1 19364 19364 1.7423 0 1 + 31691 19577 21135 21149 31296 31296 0.02332883409144415 NLWMEILY 8 Unmodified _NLWMEILY_ 0 0 0 ENSG00000116668|ENST00000367500|SWT1 ENSG00000116668|ENST00000367500|SWT1 ENSG00000116668|ENST00000367500|SWT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2749633789062 2 541.272978 1080.5314 NaN NaN NaN NaN NaN NaN NaN 123.04 1 123.04 122.54 123.54 0 0 0 0 0.21452 1 24249 24249 13.508 0.97634 1 31692 2939 21136 21150 31297 31297 -0.005641176603376152 NLWPCKQTY 9 Unmodified _NLWPCKQTY_ 0 0 0 REV__ENST00000326237.3_1_3:10044409-10044886:+|nuORF REV__ENST00000326237.3_1_3:10044409-10044886:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3365478515625 2 576.778959 1151.54336 0.44688 0.00025775 1.6211 0.00093503 2.068 0.0011928 576.780041006457 68.48 0.49172 64.944 64.656 65.148 -3.5362 19 13 2 0 0 0 0.69192 1 12867 12867 26.884 0 1 5923200 + 31693 20579 21137 21151 31298 31298 -0.02634500917179139 NLWTVSFLD 9 Unmodified _NLWTVSFLD_ 0 0 0 REV__ENSG00000062282|ENST00000228027|DGAT2 REV__ENSG00000062282|ENST00000228027|DGAT2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.781494140625 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 106.98 1 106.98 106.48 107.48 0 0 0 0 0.22962 1 21033 21033 14.838 3.198 1 + 31694 14154 21138 21152 31299 31299 0.0013803672338781325 NLYAEILPVDY 11 Unmodified _NLYAEILPVDY_ 0 0 0 REV__tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1 REV__tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2150573730469 3 437.227333 1308.66017 0.12197 5.333E-05 0.39843 0.00017421 0.52041 0.00022754 437.2275460573203 35.337 0.42071 33.084 32.846 33.266 -2.2527 16 11 2 0 0 0 0.77537 1 6204 6204 6.6235 1.5759 1 777490 + 31695 25033 21139 21153 31300 31300 0.018185157835659993 NLYGVKLI 8 Unmodified _NLYGVKLI_ 0 0 0 REV__ENST00000441170.1_1_4:118496255-118496735:-|nuORF REV__ENST00000441170.1_1_4:118496255-118496735:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2455139160156 2 460.284203 918.553853 0.87332 0.00040198 -0.25238 -0.00011617 0.62094 0.00028581 460.28392645935264 24.259 0.38404 22.705 22.533 22.917 -1.5532 15 10 2 0 0 0 1.0249 1 4256 4256 5.7604 0 1 489350 + 31696 21709 21140 21154 31301 31301 0.09131849799553038 NLYKAPILL 9 Unmodified _NLYKAPILL_ 0 0 0 nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A nc|ENSG00000004487|O60341|KDM1A nc|ENSG00000004487|O60341|KDM1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.281494140625 2 522.826235 1043.63792 0.19993 0.00010453 0.2711 0.00014174 0.47103 0.00024626 522.8263453383153 151.33 0.88094 151.33 150.85 151.73 0 32 24 2 0 0 0 0.42289 1 30270 30270 39.957 23.015 1 1885900 31697 974 21141 21155 31302 31302 0.11784380896460789 NLYKHRRTQMH 11 Unmodified _NLYKHRRTQMH_ 0 0 0 ZNF831|p.T195M|1|0.33|ENSG00000124203|chr20:59191603-59191603|C/T|missense_variant ZNF831|p.T195M|1|0.33|ENSG00000124203|chr20:59191603-59191603|C/T|missense_variant ZNF831|p.T195M|1|0.33|ENSG00000124203|chr20:59191603-59191603|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3912353515625 2 742.388593 1482.76263 NaN NaN NaN NaN NaN NaN NaN 163.5 1 158.71 158.21 159.21 -4.7898 0 0 0 0.23379 1 32596 32596 5.2969 1.1074 1 31698 26636 21142 21156 31303 31303 0.0405632309405064 NLYKHRRTQMH 11 Unmodified _NLYKHRRTQMH_ 0 0 0 ZNF831|p.T195M|1|0.33|ENSG00000124203|chr20:59191603-59191603|C/T|missense_variant ZNF831|p.T195M|1|0.33|ENSG00000124203|chr20:59191603-59191603|C/T|missense_variant ZNF831|p.T195M|1|0.33|ENSG00000124203|chr20:59191603-59191603|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3890991210938 2 742.388593 1482.76263 NaN NaN NaN NaN NaN NaN NaN 168 1 163.05 162.55 163.55 -4.948 0 0 0 0.22683 1 33094 33094 10.8 2.644 1 31699 26636 21142 21156 31304 31304 0.0405632309405064 NLYLKQSN 8 Unmodified _NLYLKQSN_ 0 0 0 REV__tr|U7SZE1|U7SZE1_FUSNUAdeninephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00717PE=4SV=1 REV__tr|U7SZE1|U7SZE1_FUSNUAdeninephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00717PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26300048828125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 173.07 1 168.28 167.78 168.78 -4.7898 0 0 0 0.21486 1 35283 35283 7.9102 2.1783 1 + 31700 25242 21143 21157 31305 31305 0.023328834091330464 NLYNEIESI 9 Unmodified _NLYNEIESI_ 0 0 0 REV__tr|U7T6N5|U7T6N5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00309PE=4SV=1 REV__tr|U7T6N5|U7T6N5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00309PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7767944335938 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 96.945 1 92.847 92.347 93.347 -4.0978 0 0 0 0.22251 1 19016 19016 16.942 1.0951 1 + 31701 25450 21144 21158 31306 31306 -0.013868748644881634 NLYPFVKTV 9 Unmodified _NLYPFVKTV_ 0 0 0 ENST00000427397.5_1_2:216176945-216197107:+|nuORF;ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF ENST00000427397.5_1_2:216176945-216197107:+|nuORF ENST00000427397.5_1_2:216176945-216197107:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2748413085938 2 540.808042 1079.60153 0.29548 0.0001598 0.088566 4.7897E-05 0.38405 0.0002077 540.8079953344841 132.92 1.0127 132.92 132.47 133.49 0 83 28 4 0 0 0 0.025708 3 26322 26251;26278;26322 86.332 54.026 1 42713000 31702 255 21145 21159 31307;31308;31309 31309 0.06491503999745873 NLYPFVKTV 9 Unmodified _NLYPFVKTV_ 0 0 0 ENST00000427397.5_1_2:216176945-216197107:+|nuORF;ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF ENST00000427397.5_1_2:216176945-216197107:+|nuORF ENST00000427397.5_1_2:216176945-216197107:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27880859375 2 540.808042 1079.60153 0.22392 0.0001211 0.080773 4.3683E-05 0.3047 0.00016478 540.8080318070009 137.43 0.95137 132.79 132.31 133.26 -4.6413 84 26 4 0 0 0 0.048406 3 27149 27149;27162;27171 71.708 29.296 1 43012000 31703 255 21145 21159 31310;31311;31312 31310 0.06491503999745873 NLYPFVKTV 9 Unmodified _NLYPFVKTV_ 0 0 0 ENST00000427397.5_1_2:216176945-216197107:+|nuORF;ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF ENST00000427397.5_1_2:216176945-216197107:+|nuORF ENST00000427397.5_1_2:216176945-216197107:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2625122070312 2 540.808042 1079.60153 0.14572 7.8809E-05 0.19862 0.00010742 0.34435 0.00018623 540.8080939239442 137.68 1.0573 132.76 132.23 133.28 -4.9215 89 29 4 0 0 0 0.024872 3 26477 26477;26493;26523 87.258 49.284 1 32288000 31704 255 21145 21159 31313;31314;31315 31313 0.06491503999745873 NLYPFVKTV 9 Unmodified _NLYPFVKTV_ 0 0 0 ENST00000427397.5_1_2:216176945-216197107:+|nuORF;ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF ENST00000427397.5_1_2:216176945-216197107:+|nuORF ENST00000427397.5_1_2:216176945-216197107:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.275634765625 2 540.808042 1079.60153 0.32168 0.00017397 -0.16276 -8.802E-05 0.15892 8.5948E-05 540.8079755078634 137.64 1.061 132.8 132.21 133.27 -4.84 99 29 4 0 0 0 0.010315 3 26491 26491;26498;26572 103.82 57.803 1 36641000 31705 255 21145 21159 31316;31317;31318 31316 0.06491503999745873 NLYSMYNLFC 10 Unmodified _NLYSMYNLFC_ 0 0 0 ENST00000490434.5_1_3:121605231-121605306:+|nuORF ENST00000490434.5_1_3:121605231-121605306:+|nuORF ENST00000490434.5_1_3:121605231-121605306:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 634.2817993164062 2 634.277934 1266.54132 NaN NaN NaN NaN NaN NaN NaN 170.06 1 165.19 164.69 165.69 -4.873 0 0 0 0.22583 1 33633 33633 13.906 0.86358 1 31706 10513 21146 21160 31319 31319 -0.0812929771727795 NLYYSKFF 8 Unmodified _NLYYSKFF_ 0 0 0 PTCD3|p.F456L|1|0.35|ENSG00000132300|chr2:86132419-86132419|C/A|missense_variant PTCD3|p.F456L|1|0.35|ENSG00000132300|chr2:86132419-86132419|C/A|missense_variant PTCD3|p.F456L|1|0.35|ENSG00000132300|chr2:86132419-86132419|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2722778320312 2 541.271293 1080.52803 NaN NaN NaN NaN NaN NaN NaN 147.17 1 142.06 141.56 142.56 -5.1108 0 0 0 0.21452 1 28475 28475 13.508 0.97634 1 31707 12842 21147 21161 31320 31320 -0.00901044442730381 NMAKAGGL 8 Unmodified _NMAKAGGL_ 0 0 0 REV__ENSG00000131269|ENST00000373394|ABCB7 REV__ENSG00000131269|ENST00000373394|ABCB7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2184753417969 2 381.202356 760.390159 NaN NaN NaN NaN NaN NaN NaN 53.477 1 50.593 50.093 51.093 -2.8837 0 0 0 0.23899 1 10186 10186 1.3295 0 1 + 31708 16065 21148 21162 31321 31321 0.00037928757024019433 NMDELRHQV 9 Unmodified _NMDELRHQV_ 0 0 0 ENSG00000185262|ENST00000327490|UBALD2 ENSG00000185262|ENST00000327490|UBALD2 ENSG00000185262|ENST00000327490|UBALD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2120666503906 3 381.185474 1140.53459 NaN NaN NaN NaN NaN NaN NaN 48.812 1 45.805 45.305 46.305 -3.0068 0 0 0 0.23508 1 8938 8938 7.1017 0.37856 1 31709 6973 21149 21163 31322 31322 -0.03005474553674503 NMDLSFLSPQ 10 Unmodified _NMDLSFLSPQ_ 0 0 0 ENST00000253329.2_1_6:149856846-149862103:-|nuORF ENST00000253329.2_1_6:149856846-149862103:-|nuORF ENST00000253329.2_1_6:149856846-149862103:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3341064453125 2 576.273706 1150.53286 0.29412 0.00016949 3.6489 0.0021028 3.943 0.0022722 576.7755400171407 129.02 0.17737 129.02 128.95 129.13 0 8 4 3 0 0 0 0.87854 1 25474 25474 13.906 1.3745 1 1340400 31710 8238 21150 21164 31323 31323 -0.0363852836226215 NMDMKRLIM 9 Unmodified _NMDMKRLIM_ 0 0 0 ENSG00000025796|ENST00000369002|SEC63;SEC63|p.R239Q|1|0.06|ENSG00000025796|chr6:107908944-107908944|C/T|missense_variant ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3297119140625 2 576.290322 1150.56609 0.29384 0.00016934 -0.35908 -0.00020693 -0.065245 -3.76E-05 576.292232678343 129.45 0.23665 129.45 129.33 129.57 0 9 6 3 0 0 0 0.76271 1 25548 25548 20.454 5.6154 1 2282700 31711 1142 21151 21165 31324 31324 -0.0031694111555680138 NMDNMFESY 9 Unmodified _NMDNMFESY_ 0 0 0 CON__H-INV:HIT000292931;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8 CON__H-INV:HIT000292931 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3150024414062 2 575.712624 1149.4107 0.14791 8.5155E-05 -0.4209 -0.00024232 -0.27299 -0.00015717 575.7126376133829 134.64 1.472 129.77 129.23 130.7 -4.8726 134 41 6 0 0 0 2.3519E-05 2 25902 25902;25904 134.3 113.84 1 110680000 + 31712 647;658 21152 21166 31325;31326 31325 -0.15803313436140343 NMDNMFESY 9 Unmodified _NMDNMFESY_ 0 0 0 CON__H-INV:HIT000292931;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8 CON__H-INV:HIT000292931 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 575.712624 1149.4107 -0.0025437 -1.4644E-06 -0.36151 -0.00020813 -0.36406 -0.00020959 575.7126972282897 134.47 1.3389 129.83 129.35 130.69 -4.6399 0.071162 3.3535E-05 NaN 97.138 119 37 5 NaN NaN NaN NaN 0 NaN NaN 0 111410000 + 31713 647;658 21152 21166 -0.15803313436140343 NMDNMFESY 9 Unmodified _NMDNMFESY_ 0 0 0 CON__H-INV:HIT000292931;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8 CON__H-INV:HIT000292931 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.712624 1149.4107 0.22054 0.00012697 -0.38952 -0.00022425 -0.16898 -9.7283E-05 575.7126358065202 134.49 1.0921 129.67 129.27 130.36 -4.8175 -0.084525 1.2918E-06 NaN 97.138 92 30 4 NaN NaN NaN NaN 0 NaN NaN 0 60443000 + 31714 647;658 21152 21166 -0.15803313436140343 NMDRFYQL 8 Unmodified _NMDRFYQL_ 0 0 0 ENST00000425103.5_1_4:6863758-6863836:+|nuORF ENST00000425103.5_1_4:6863758-6863836:+|nuORF ENST00000425103.5_1_4:6863758-6863836:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7698364257812 2 543.755484 1085.49641 0.25921 0.00014094 -1.9407 -0.0010553 -1.6815 -0.00091434 543.7543515177139 97.587 0.69051 93.489 93.151 93.842 -4.0978 30 19 2 0 0 0 0.98792 1 19129 19129 14.582 9.8257 1 2538600 31715 9710 21153 21167 31327 31327 -0.04291360468300809 NMDRFYQL 8 Unmodified _NMDRFYQL_ 0 0 0 ENST00000425103.5_1_4:6863758-6863836:+|nuORF ENST00000425103.5_1_4:6863758-6863836:+|nuORF ENST00000425103.5_1_4:6863758-6863836:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7944946289062 2 543.755484 1085.49641 0.19023 0.00010344 -1.4227 -0.00077359 -1.2325 -0.00067016 543.7545258723485 97.89 0.41944 93.621 93.394 93.813 -4.2692 18 11 2 0 0 0 0.98792 1 18680 18680 14.582 14.582 1 1325600 31716 9710 21153 21167 31328 31328 -0.04291360468300809 NMDRPIAG 8 Unmodified _NMDRPIAG_ 0 0 0 nc|ENSG00000185621|Q96KR4-2|LMLN;nc|ENSG00000185621|Q96KR4|LMLN;ENSG00000185621|ENST00000420910|LMLN nc|ENSG00000185621|Q96KR4-2|LMLN nc|ENSG00000185621|Q96KR4-2|LMLN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2170715332031 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 123.5 1 118.93 118.43 119.43 -4.5757 0 0 0 0.21452 1 24343 24343 13.508 0 1 31717 7002 21154 21168 31329 31329 -0.023875877025943737 NMDSWDMLWLI 11 Unmodified _NMDSWDMLWLI_ 0 0 0 REV__ENST00000568897.5_1_16:1004355-1020830:-|nuORF REV__ENST00000568897.5_1_16:1004355-1020830:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 475.1969909667969 3 475.217674 1422.63119 NaN NaN NaN NaN NaN NaN NaN 129.41 1 129.41 128.91 129.91 0 0 0 0 0.22632 1 25566 25566 0.0059557 0 1 + 31718 14870 21155 21169 31330 31330 -0.06321668108716949 NMEERPQMEDY 11 Unmodified _NMEERPQMEDY_ 0 0 0 REV__ENST00000608013.1_1_2:96196226-96196520:+|nuORF REV__ENST00000608013.1_1_2:96196226-96196520:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.254150390625 3 481.195598 1440.56496 0.22145 0.00010656 -0.55029 -0.0002648 -0.32884 -0.00015824 481.5296835387583 172.05 0.17332 167.15 167.02 167.19 -4.8977 10 4 3 0 0 0 0.81043 1 34111 34111 2.2527 0 1 7209400 + 31719 23476 21156 21170 31331 31331 -0.13769528741431714 NMERHEMV 8 Unmodified _NMERHEMV_ 0 0 0 ENSG00000196081|ENST00000418100|ZNF724 ENSG00000196081|ENST00000418100|ZNF724 ENSG00000196081|ENST00000418100|ZNF724 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6973266601562 2 523.231319 1044.44808 0.18939 9.9093E-05 0.35781 0.00018722 0.54719 0.00028631 523.231548836247 96.912 0.94437 96.912 96.528 97.472 0 63 26 3 0 0 0 0.69031 1 19073 19073 15.847 2.3393 1 7637900 31720 7230 21157 21171 31332 31332 -0.0723617737985478 NMERHEMV 8 Unmodified _NMERHEMV_ 0 0 0 ENSG00000196081|ENST00000418100|ZNF724 ENSG00000196081|ENST00000418100|ZNF724 ENSG00000196081|ENST00000418100|ZNF724 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.231319 1044.44808 0.18939 9.9093E-05 0.35781 0.00018722 0.54719 0.00028631 523.231548836247 96.912 0.94437 96.912 96.528 97.472 0 -0.020741 -0.00011916 NaN 15.847 63 26 3 NaN NaN NaN NaN 0 NaN NaN 0 7637900 31721 7230 21157 21171 -0.0723617737985478 NMERHEMV 8 Unmodified _NMERHEMV_ 0 0 0 ENSG00000196081|ENST00000418100|ZNF724 ENSG00000196081|ENST00000418100|ZNF724 ENSG00000196081|ENST00000418100|ZNF724 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.231319 1044.44808 0.41898 0.00021922 0.68329 0.00035752 1.1023 0.00057674 523.2316383466734 100.94 0.94088 96.953 96.516 97.456 -3.9895 0.020741 0.00022144 NaN 15.847 69 26 3 NaN NaN NaN NaN 0 NaN NaN 0 7429900 31722 7230 21157 21171 -0.0723617737985478 NMERPLRHA 9 Unmodified _NMERPLRHA_ 0 0 0 REV__SHISA6|p.P205L|1|0.33|ENSG00000188803|chr17:11242036-11242036|C/T|missense_variant REV__SHISA6|p.P205L|1|0.33|ENSG00000188803|chr17:11242036-11242036|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2124328613281 3 375.197825 1122.57165 NaN NaN NaN NaN NaN NaN NaN 50.528 1 47.476 46.976 47.976 -3.0517 0 0 0 0.19657 1 9290 9290 0.0033805 0 1 + 31723 24614 21158 21172 31333 31333 0.015262417827671015 NMEVEDEEE 9 Unmodified _NMEVEDEEE_ 0 0 0 REV__ENST00000482794.1_1_3:182551564-182553862:+|nuORF REV__ENST00000482794.1_1_3:182551564-182553862:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2125244140625 3 375.141376 1122.4023 0.32767 0.00012292 -1.0847 -0.00040692 -0.75705 -0.000284 375.1410791736351 102.19 0.46931 97.869 97.54 98.01 -4.3208 20 13 2 0 0 0 0.78802 1 19587 19587 2.2828 1.0894 1 663640 + 31724 22195 21159 21173 31334 31334 -0.15400588871784748 NMEYGRNF 8 Unmodified _NMEYGRNF_ 0 0 0 ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2;ENSG00000100350|ENST00000397224|FOXRED2 ENST00000366463.6_1_22:36886057-36894231:-|nuORF ENST00000366463.6_1_22:36886057-36894231:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 515.267333984375 2 515.724184 1029.43381 -0.10707 -5.5217E-05 -0.89596 -0.00046207 -1.003 -0.00051729 515.7238847206743 143.88 0.83521 139.22 138.61 139.44 -4.6565 34 23 2 0 0 0 1.0095 1 28405 28405 2.5775 0 1 6102400 31725 1961 21160 21174 31335 31335 -0.07972506536520996 NMGQCCCA 8 Unmodified _NMGQCCCA_ 0 0 0 ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant;ENSG00000137124|ENST00000377698|ALDH1B1 ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant ALDH1B1|p.V362Gfs*6|1|0.35|ENSG00000137124|chr9:38396832-38396833|GT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.27374267578125 2 415.126619 828.238685 NaN NaN NaN NaN NaN NaN NaN 13.357 1 12.347 11.847 12.847 -1.0098 0 0 0 0.21486 1 1930 1930 0.79363 0 1 31726 120 21161 21175 31336 31336 -0.18230459929020526 NMKEKINAV 9 Unmodified _NMKEKINAV_ 0 0 0 ENSG00000123352|ENST00000552918|SPATS2 ENSG00000123352|ENST00000552918|SPATS2 ENSG00000123352|ENST00000552918|SPATS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.685791015625 2 523.786784 1045.55902 -0.042976 -2.251E-05 -0.20508 -0.00010742 -0.24805 -0.00012993 523.7866966500374 32.647 0.38921 30.417 30.117 30.507 -2.2305 20 10 3 0 0 0 0.60663 1 5959 5959 26.268 14.628 1 1183500 31727 3262 21162 21176 31337 31337 0.03805785599865885 NMKEKINAV 9 Unmodified _NMKEKINAV_ 0 0 0 ENSG00000123352|ENST00000552918|SPATS2 ENSG00000123352|ENST00000552918|SPATS2 ENSG00000123352|ENST00000552918|SPATS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.786784 1045.55902 -0.29483 -0.00015443 0.0005991 3.138E-07 -0.29423 -0.00015412 523.7867755144085 32.461 0.32103 30.434 30.251 30.572 -2.0264 0.018332 0.00033526 NaN 15.248 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1209400 31728 3262 21162 21176 0.03805785599865885 NMKEKINAV 9 Unmodified _NMKEKINAV_ 0 0 0 ENSG00000123352|ENST00000552918|SPATS2 ENSG00000123352|ENST00000552918|SPATS2 ENSG00000123352|ENST00000552918|SPATS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.786784 1045.55902 0.49716 0.00026041 -0.57554 -0.00030146 -0.078378 -4.1054E-05 523.7865063967398 32.527 0.31119 30.379 30.245 30.556 -2.1483 -0.037577 -0.00026829 NaN 15.248 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 712480 31729 3262 21162 21176 0.03805785599865885 NMLCHSAF 8 Unmodified _NMLCHSAF_ 0 0 0 REV__nc|ENSG00000083642|Q9NTI5-3|PDS5B;REV__ENSG00000121892|ENST00000303538|PDS5A REV__ENSG00000121892|ENST00000303538|PDS5A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5240478515625 2 461.699123 921.383693 NaN NaN NaN NaN NaN NaN NaN 58.057 1 54.806 54.306 55.306 -3.2517 0 0 0 0.21486 1 10781 10781 9.3474 2.0582 1 + 31730 15668;14455 21163 21177 31338 31338 -0.0801433246600709 NMLLCLSPA 9 Unmodified _NMLLCLSPA_ 0 0 0 CARNS1|p.P46Rfs*28|1|0.32|ENSG00000172508|chr11:67418892-67418892|C/-|frameshift_variant;ENST00000531958.5_1_11:67184814-67192505:+|nuORF;nc|ENSG00000172508|A5YM72-4|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1 CARNS1|p.P46Rfs*28|1|0.32|ENSG00000172508|chr11:67418892-67418892|C/-|frameshift_variant CARNS1|p.P46Rfs*28|1|0.32|ENSG00000172508|chr11:67418892-67418892|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24554443359375 2 481.245906 960.477259 NaN NaN NaN NaN NaN NaN NaN 120.91 1 120.91 120.41 121.41 0 0 0 0 0.19679 1 23834 23834 0.37959 0 1 31731 392 21164 21178 31339 31339 -0.004560330835943205 NMLLKAAR 8 Unmodified _NMLLKAAR_ 0 0 0 ENST00000585166.1_1_17:57466794-57474519:+|nuORF ENST00000585166.1_1_17:57466794-57474519:+|nuORF ENST00000585166.1_1_17:57466794-57474519:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2287902832031 2 458.77348 915.532406 0.26327 0.00012078 1.5355 0.00070443 1.7987 0.00082521 458.77416733569817 32.218 0.38455 32.218 31.978 32.363 0 14 10 2 0 0 0 1.0066 1 5840 5840 11.64 0 1 642200 31732 11529 21165 21179 31340 31340 0.07126141499190908 NMLLKAAR 8 Unmodified _NMLLKAAR_ 0 0 0 ENST00000585166.1_1_17:57466794-57474519:+|nuORF ENST00000585166.1_1_17:57466794-57474519:+|nuORF ENST00000585166.1_1_17:57466794-57474519:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.77348 915.532406 0.1406 6.4505E-05 1.9354 0.00088791 2.076 0.00095241 458.7743125543373 34.42 0.4156 32.168 31.977 32.392 -2.2527 -0.025209 0.00014079 NaN 11.64 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 805540 31733 11529 21165 21179 0.07126141499190908 NMLYVLQY 8 Unmodified _NMLYVLQY_ 0 0 0 REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.259521484375 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 143.69 1 138.66 138.16 139.16 -5.0261 0 0 0 0.21486 1 27701 27701 8.5933 2.8329 1 + 31734 13275 21166 21180 31341 31341 -0.0038040417739466648 NMMSGISSV 9 2 Oxidation (M) _NM(Oxidation (M))M(Oxidation (M))SGISSV_ NM(1)M(1)SGISSV NM(100)M(100)SGISSV 0 0 2 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7237854003906 2 479.204435 956.394317 0.054026 2.589E-05 0.032043 1.5355E-05 0.086069 4.1245E-05 479.20441284254 38.598 0.95443 38.598 38.211 39.166 0 57 26 3 0 0 0 0.02941 1 7167 7167 103.35 61.514 1 7016300 31735 2053 21167 21181 31342 31342 20;21 -0.08562394602222412 NMMSGISSV 9 2 Oxidation (M) _NM(Oxidation (M))M(Oxidation (M))SGISSV_ NM(1)M(1)SGISSV NM(60)M(60)SGISSV 0 0 2 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7232360839844 2 479.204435 956.394317 -0.18747 -8.9837E-05 -0.47331 -0.00022681 -0.66078 -0.00031665 479.20452763394195 41.091 1.0108 38.456 38.007 39.017 -2.6348 62 28 3 0 0 0 0.11402 1 7719 7719 60.074 29.437 1 8408400 31736 2053 21167 21181 31343 31343 20;21 -0.08562394602222412 NMMSGISSV 9 2 Oxidation (M) _NM(Oxidation (M))M(Oxidation (M))SGISSV_ NM(1)M(1)SGISSV NM(100)M(100)SGISSV 0 0 2 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7236633300781 2 479.204435 956.394317 0.048449 2.3217E-05 -0.64544 -0.0003093 -0.59699 -0.00028608 479.2043794809748 41.018 1.16 38.529 38.04 39.2 -2.4896 95 32 5 0 0 0 0.01155 1 7381 7381 103.35 53.421 1 6697100 31737 2053 21167 21181 31344 31344 20;21 -0.08562394602222412 NMMSGISSV 9 Unmodified _NMMSGISSV_ 0 0 0 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2590637207031 2 463.209521 924.404488 0.6524 0.0003022 -0.90878 -0.00042095 -0.25638 -0.00011876 463.20927373125596 109.53 1.611 105.35 104.21 105.82 -4.1826 113 45 5 0 0 0 0.62102 1 21077 21077 11.64 3.7301 1 31558000 31738 2053 21167 21182 31345 31345 -0.06073786876993381 NMRAPEVG 8 Unmodified _NMRAPEVG_ 0 0 0 REV__TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant REV__TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2167053222656 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 69.266 1 66.086 65.586 66.586 -3.1796 0 0 0 0.21486 1 13466 13466 8.5933 0 1 + 31739 14167 21168 21183 31346 31346 -0.023875877025943737 NMRARQVS 8 Unmodified _NMRARQVS_ 0 0 0 REV__tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1 REV__tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2533874511719 2 481.253443 960.492332 NaN NaN NaN NaN NaN NaN NaN 104.97 1 104.97 104.47 105.47 0 0 0 0 0.21039 1 20632 20632 16.942 0 1 + 31740 24999 21169 21184 31347 31347 0.010505948286322564 NMRYNDKGP 9 Unmodified _NMRYNDKGP_ 0 0 0 REV__KPNA5|p.K15N|1|0.29|ENSG00000196911|chr6:116689360-116689360|A/C|missense_variant REV__KPNA5|p.K15N|1|0.29|ENSG00000196911|chr6:116689360-116689360|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7816162109375 2 547.756015 1093.49748 NaN NaN NaN NaN NaN NaN NaN 117.03 1 117.03 116.53 117.53 0 0 0 0 0.23508 1 23051 23051 9.3831 0 1 + 31741 23734 21170 21185 31348 31348 -0.045531460994197914 NMVAADTVS 9 Unmodified _NMVAADTVS_ 0 0 0 REV__nc|ENSG00000189013|Q99706-6|KIR2DL4 REV__nc|ENSG00000189013|Q99706-6|KIR2DL4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.76177978515625 2 454.213117 906.411682 0.46033 0.00020909 -0.74416 -0.00033801 -0.28383 -0.00012892 454.2127061039647 41.992 0.49749 41.992 41.653 42.15 0 25 13 2 0 0 0 0.72864 1 7839 7839 16.942 0 1 2267900 + 31742 24219 21171 21186 31349 31349 -0.045267310049325715 NMVAADTVS 9 Unmodified _NMVAADTVS_ 0 0 0 REV__nc|ENSG00000189013|Q99706-6|KIR2DL4 REV__nc|ENSG00000189013|Q99706-6|KIR2DL4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 454.213117 906.411682 -0.078925 -3.5849E-05 0.0095747 4.3489E-06 -0.06935 -3.15E-05 454.2130876336458 44.81 0.66989 42.044 41.664 42.334 -2.7661 0.01181 0.00020661 NaN 7.2892 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3567600 + 31743 24219 21171 21186 -0.045267310049325715 NMVDIIHSV 9 Oxidation (M) _NM(Oxidation (M))VDIIHSV_ NM(1)VDIIHSV NM(100)VDIIHSV 0 0 1 ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB ENST00000475214.5_1_3:135974226-136045892:+|nuORF ENST00000475214.5_1_3:135974226-136045892:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26318359375 2 522.263142 1042.51173 -0.010864 -5.6737E-06 0.16159 8.4393E-05 0.15073 7.8719E-05 522.2632166668656 92.528 0.83002 92.528 92.056 92.886 0 43 23 2 0 0 0 0.010502 6 18135 18042;18090;18094;18118;18135;18142 103.42 70.634 1 11102000 31744 2772 21172 21187 31350;31351;31352;31353;31354;31355 31354 32 -0.007824936711358532 NMVDIIHSV 9 Oxidation (M) _NM(Oxidation (M))VDIIHSV_ NM(1)VDIIHSV NM(89)VDIIHSV 0 0 1 ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB ENST00000475214.5_1_3:135974226-136045892:+|nuORF ENST00000475214.5_1_3:135974226-136045892:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2724609375 2 522.263142 1042.51173 -0.17662 -9.2241E-05 0.17815 9.3043E-05 0.001536 8.0219E-07 522.2632309853274 96.212 1.0015 92.162 91.678 92.68 -4.0496 50 28 2 0 0 0 0.022938 5 18854 18836;18854;18881;18882;18929 89.401 57.095 1 6580900 31745 2772 21172 21187 31356;31357;31358;31359;31360 31357 32 -0.007824936711358532 NMVDIIHSV 9 Oxidation (M) _NM(Oxidation (M))VDIIHSV_ NM(1)VDIIHSV NM(89)VDIIHSV 0 0 1 ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB ENST00000475214.5_1_3:135974226-136045892:+|nuORF ENST00000475214.5_1_3:135974226-136045892:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26318359375 2 522.263142 1042.51173 -0.5912 -0.00030876 0.7009 0.00036605 0.1097 5.7293E-05 522.263506995107 96.497 0.79436 92.262 91.915 92.709 -4.2348 41 22 2 0 0 0 0.022938 2 18417 18417;18468 89.401 57.095 1 4409700 31746 2772 21172 21187 31361;31362 31361 32 -0.007824936711358532 NMVDIIHSV 9 Oxidation (M) _NM(Oxidation (M))VDIIHSV_ NM(1)VDIIHSV NM(100)VDIIHSV 0 0 1 ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB ENST00000475214.5_1_3:135974226-136045892:+|nuORF ENST00000475214.5_1_3:135974226-136045892:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2722778320312 2 522.263142 1042.51173 0.019176 1.0015E-05 0.083053 4.3376E-05 0.10223 5.339E-05 522.2631483254647 96.179 0.93739 92.298 91.817 92.755 -3.881 48 26 2 0 0 0 0.010502 6 18474 18433;18470;18474;18476;18513;18517 103.42 63.47 1 8874700 31747 2772 21172 21187 31363;31364;31365;31366;31367;31368 31365 32 -0.007824936711358532 NMVNEMYKNYH 11 Unmodified _NMVNEMYKNYH_ 0 0 0 REV__ATP6V1G3|p.S94N|1|0.34|ENSG00000151418|chr1:198523467-198523467|C/T|missense_variant REV__ATP6V1G3|p.S94N|1|0.34|ENSG00000151418|chr1:198523467-198523467|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 721.8131103515625 2 721.813204 1441.61186 NaN NaN NaN NaN NaN NaN NaN 11.341 1 10.437 9.9371 10.937 -0.90401 0 0 0 0.22632 1 1496 1496 0 0 1 + 31748 13154 21173 21188 31369 31369 -0.09128624399613727 NMWRMYKKRWV 11 Unmodified _NMWRMYKKRWV_ 0 0 0 REV__nc|ENSG00000127603|O94854|MACF1;REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27978515625 3 533.279602 1596.81698 NaN NaN NaN NaN NaN NaN NaN 4.7354 1 4.7354 4.2354 5.2354 0 0 0 0 0.23698 1 144 144 0.094841 0 1 + 31749 15894;24029 21174 21189 31370 31370 0.04244198921219322 NMYEEYQRQ 9 Unmodified _NMYEEYQRQ_ 0 0 0 NBEA|p.K960N|1|0.15|ENSG00000172915|chr13:35159051-35159051|A/C|missense_variant NBEA|p.K960N|1|0.15|ENSG00000172915|chr13:35159051-35159051|A/C|missense_variant NBEA|p.K960N|1|0.15|ENSG00000172915|chr13:35159051-35159051|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7703857421875 2 630.769319 1259.52409 NaN NaN NaN NaN NaN NaN NaN 66.996 1 66.996 66.496 67.496 0 0 0 0 0.19657 1 12946 12946 4.897 1.0207 1 31750 12199 21175 21190 31371 31371 -0.09529501998736123 NNCCECCT 8 Unmodified _NNCCECCT_ 0 0 0 REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1 REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 891.23291015625 1 889.230706 888.223429 0.38075 0.00033858 -1.2401 -0.0011027 -0.85936 -0.00076417 889.2332414854362 9.3359 0.76305 9.3359 8.8927 9.6557 0 54 21 4 0 0 0 8448 1 1087 1087 0 0 1 1399200 + 31751 19590 21176 21191 31372 31372 -0.22515371516885807 NNCCECCT 8 Unmodified _NNCCECCT_ 0 0 0 REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1 REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 891.7183837890625 1 889.230706 888.223429 0.38049 0.00033834 -0.23289 -0.0002071 0.14759 0.00013124 889.233089704982 9.9817 1.196 9.9817 9.4508 10.647 0 79 33 3 0 0 0 8448 2 1238 1238;1274 0 0 1 1432900 + 31752 19590 21176 21191 31373;31374 31373 -0.22515371516885807 NNCCECCT 8 Unmodified _NNCCECCT_ 0 0 0 REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1 REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 892.2338256835938 1 889.230706 888.223429 -0.39916 -0.00035495 -0.11223 -9.9796E-05 -0.51139 -0.00045474 889.2336196955885 9.8914 1.5674 9.0972 8.5616 10.129 -0.79424 93 44 4 0 0 0 8448 1 1103 1103 0 0 1 1611200 + 31753 19590 21176 21191 31375 31375 -0.22515371516885807 NNCCECCT 8 Unmodified _NNCCECCT_ 0 0 0 REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1 REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 893.2301635742188 1 889.230706 888.223429 -1.458 -0.0012965 -0.40034 -0.000356 -1.8583 -0.0016525 889.2345184179409 6.9832 1.3685 5.9684 5.335 6.7035 -1.0148 135 38 5 0 0 0 0.89856 1 569 569 0 0 1 1092500 + 31754 19590 21176 21191 31376 31376 -0.22515371516885807 NNCEEEEGCDC 11 Unmodified _NNCEEEEGCDC_ 0 0 0 REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7606811523438 2 622.678653 1243.34275 NaN NaN NaN NaN NaN NaN NaN 158.97 1 154.17 153.67 154.67 -4.7952 0 0 0 0.22632 1 31616 31616 0 0 1 + 31755 12940 21177 21192 31377 31377 -0.2691855114910595 NNCEEEEGCDC 11 Unmodified _NNCEEEEGCDC_ 0 0 0 REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7621459960938 2 622.678653 1243.34275 NaN NaN NaN NaN NaN NaN NaN 162.06 1 156.91 156.41 157.41 -5.1438 0 0 0 0.22632 1 31476 31476 0 0 1 + 31756 12940 21177 21192 31378 31378 -0.2691855114910595 NNCNCNNCCNN 11 Unmodified _NNCNCNNCCNN_ 0 0 0 ENSG00000132749|ENST00000255087|TESMIN ENSG00000132749|ENST00000255087|TESMIN ENSG00000132749|ENST00000255087|TESMIN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 615.1795043945312 2 615.181174 1228.34779 NaN NaN NaN NaN NaN NaN NaN 6.7517 1 5.7369 5.2369 6.2369 -1.0148 0 0 0 0.23698 1 477 477 0 0 1 31757 3760 21178 21193 31379 31379 -0.2572452576748674 NNDTYTGEWF 10 Unmodified _NNDTYTGEWF_ 0 0 0 ENSG00000160188|ENST00000291536|RSPH1;nc|ENSG00000160188|Q8WYR4-2|RSPH1;ENST00000493019.1_1_21:43906458-43916296:-|nuORF ENSG00000160188|ENST00000291536|RSPH1 ENSG00000160188|ENST00000291536|RSPH1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 623.78271484375 2 623.754192 1245.49383 NaN NaN NaN NaN NaN NaN NaN 167.09 1 162.15 161.65 162.65 -4.948 0 0 0 2.8426 1 32832 32832 0.26539 0 1 31758 5232 21179 21194 31380 31380 -0.11909537392284619 NNGGGGGG 8 Unmodified _NNGGGGGG_ 0 0 0 REV__nc|ENSG00000138439|Q6P1L5-2|FAM117B REV__nc|ENSG00000138439|Q6P1L5-2|FAM117B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2655639648438 1 589.232478 588.225202 0.39629 0.00023351 3.0502 0.0017973 3.4465 0.0020308 589.2361012272775 73.837 0.14375 73.837 73.734 73.878 0 5 3 2 0 0 0 8448 1 14335 14335 0.12286 0 1 1310000 + 31759 16463 21180 21195 31381 31381 -0.08538167058418367 NNGQCGGY 8 Unmodified _NNGQCGGY_ 0 0 0 REV__nc|ENSG00000249139|O95925-3|EPPIN REV__nc|ENSG00000249139|O95925-3|EPPIN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 407.228515625 2 406.653227 811.291901 -0.19159 -7.7911E-05 0.97046 0.00039464 0.77887 0.00031673 406.65357588347035 77.578 0.81693 74.115 73.614 74.431 -3.4633 33 22 2 0 0 0 1.028 1 15047 15047 0 0 1 952460 + 31760 14789 21181 21196 31382 31382 -0.12129299558830553 NNGQCGGY 8 Unmodified _NNGQCGGY_ 0 0 0 REV__nc|ENSG00000249139|O95925-3|EPPIN REV__nc|ENSG00000249139|O95925-3|EPPIN MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 406.653227 811.291901 0.10178 4.1387E-05 1.9057 0.00077494 2.0074 0.00081633 406.6532759101564 74.345 1.2612 74.345 73.911 75.173 0 0.11469 0.00048237 NaN 0 88 35 4 NaN NaN NaN NaN 0 NaN NaN 0 5104800 + 31761 14789 21181 21196 -0.12129299558830553 NNKITYPI 8 Unmodified _NNKITYPI_ 0 0 0 REV__tr|U7SVY0|U7SVY0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01379PE=4SV=1 REV__tr|U7SVY0|U7SVY0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01379PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7690734863281 2 481.768917 961.523281 0.59318 0.00028578 -0.27511 -0.00013254 0.31807 0.00015324 481.76869842300147 121.8 0.95226 117.11 116.66 117.61 -4.6873 75 26 4 0 0 0 0.52597 1 23302 23302 26.884 2.2098 1 26355000 + 31762 25196 21182 21197 31383 31383 0.04098071414500737 NNKRKIRP 8 Unmodified _NNKRKIRP_ 0 0 0 REV__nc|ENSG00000138336|Q8NFU7-3|TET1 REV__nc|ENSG00000138336|Q8NFU7-3|TET1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 513.3204956054688 2 513.319974 1024.6254 NaN NaN NaN NaN NaN NaN NaN 170.66 1 165.87 165.37 166.37 -4.7898 0 0 0 0.23782 1 34650 34650 0.12286 0 1 + 31763 16452 21183 21198 31384 31384 0.11406782276776539 NNLEEHWRKA 10 Unmodified _NNLEEHWRKA_ 0 0 0 nc|ENSG00000249961|Q8NA31-3|TERB1;nc|ENSG00000249961|Q8NA31-2|TERB1;ENSG00000249961|ENST00000433154|TERB1 nc|ENSG00000249961|Q8NA31-3|TERB1 nc|ENSG00000249961|Q8NA31-3|TERB1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 648.8424072265625 2 648.825818 1295.63708 NaN NaN NaN NaN NaN NaN NaN 9.4571 1 8.4224 7.9224 8.9224 -1.0347 0 0 0 0.22588 1 967 967 0 0 1 31764 7901 21184 21199 31385 31385 0.0010893450946696248 NNLLLTRTQRW 11 Unmodified _NNLLLTRTQRW_ 0 0 0 REV__ABCA5|p.K20N|1|0.29|ENSG00000154265|chr17:69314356-69314356|C/A|missense_variant REV__ABCA5|p.K20N|1|0.29|ENSG00000154265|chr17:69314356-69314356|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 472.2679443359375 3 472.268637 1413.78408 NaN NaN NaN NaN NaN NaN NaN 153.47 1 153.47 152.97 153.97 0 0 0 0 0.22632 1 30750 30750 3.0723 3.0461 1 + 31765 12890 21185 21200 31386 31386 0.09374031394395388 NNMYMVRPG 9 Unmodified _NNMYMVRPG_ 0 0 0 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2683715820312 2 541.249511 1080.48447 NaN NaN NaN NaN NaN NaN NaN 159.96 1 155.17 154.67 155.67 -4.7952 0 0 0 0.1963 1 31808 31808 0.40827 0.37898 1 31766 26254 21186 21201 31387 31387 -0.05255300483167957 NNNFIKMV 8 Unmodified _NNNFIKMV_ 0 0 0 REV__ENST00000552912.5_1_12:110618329-110628779:+|nuORF REV__ENST00000552912.5_1_12:110618329-110628779:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.265869140625 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 151.83 1 146.59 146.09 147.09 -5.2365 0 0 0 0.23487 1 29431 29431 0.68139 0.66813 1 + 31767 22953 21187 21202 31388 31388 0.005578448826327076 NNQMHGQGP 9 Unmodified _NNQMHGQGP_ 0 0 0 ARID1B|p.K1095Rfs*9|1|0.39|ENSG00000049618|chr6:157181155-157181156|AA/-|frameshift_variant;nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B ARID1B|p.K1095Rfs*9|1|0.39|ENSG00000049618|chr6:157181155-157181156|AA/-|frameshift_variant ARID1B|p.K1095Rfs*9|1|0.39|ENSG00000049618|chr6:157181155-157181156|AA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 328.01177978515625 3 328.143497 981.408662 -0.30277 -9.9351E-05 -0.43177 -0.00014168 -0.73454 -0.00024103 328.1433636648651 76.693 0.97679 73.278 72.97 73.947 -3.4151 32 27 2 0 0 0 0.88284 1 15014 15014 0.96228 0 1 1395300 31768 218 21188 21203 31389 31389 -0.08278561339068347 NNRITYISN 9 Unmodified _NNRITYISN_ 0 0 0 TLR2|p.S240Ffs*7|1|0.41|ENSG00000137462|chr4:153703620-153703621|-/T|frameshift_variant;ENSG00000137462|ENST00000642700|TLR2 TLR2|p.S240Ffs*7|1|0.41|ENSG00000137462|chr4:153703620-153703621|-/T|frameshift_variant TLR2|p.S240Ffs*7|1|0.41|ENSG00000137462|chr4:153703620-153703621|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7808227539062 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 90.149 1 86.371 85.871 86.871 -3.7779 0 0 0 0.21469 1 17250 17250 19.257 3.1079 1 31769 4085 21189 21204 31390 31390 0.008587693238041538 NNSMLAPSL 9 Unmodified _NNSMLAPSL_ 0 0 0 REV__nc|ENSG00000028277|P09086-5|POU2F2 REV__nc|ENSG00000028277|P09086-5|POU2F2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1476135253906 3 316.160265 945.458967 NaN NaN NaN NaN NaN NaN NaN 90.773 1 86.729 86.229 87.229 -4.0443 0 0 0 0.23508 1 17292 17292 7.609 2.3121 1 + 31770 23932 21190 21205 31391 31391 -0.015944517339335107 NNSTFCMTAY 10 Unmodified _NNSTFCMTAY_ 0 0 0 SLC6A5|p.K342N|1|0.32|ENSG00000165970|chr11:20614719-20614719|G/T|missense_variant SLC6A5|p.K342N|1|0.32|ENSG00000165970|chr11:20614719-20614719|G/T|missense_variant SLC6A5|p.K342N|1|0.32|ENSG00000165970|chr11:20614719-20614719|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3336181640625 2 576.228442 1150.44233 0.076369 4.4006E-05 -0.32526 -0.00018742 -0.24889 -0.00014342 576.2282198030163 62.95 1.2332 59.989 59.5 60.733 -2.9614 86 35 3 0 0 0 0.6817 1 12125 12125 13.042 4.2971 1 3993900 31771 25690 21191 21206 31392 31392 -0.1268732068222107 NNSTFCMTAY 10 Unmodified _NNSTFCMTAY_ 0 0 0 SLC6A5|p.K342N|1|0.32|ENSG00000165970|chr11:20614719-20614719|G/T|missense_variant SLC6A5|p.K342N|1|0.32|ENSG00000165970|chr11:20614719-20614719|G/T|missense_variant SLC6A5|p.K342N|1|0.32|ENSG00000165970|chr11:20614719-20614719|G/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 576.228442 1150.44233 0.076369 4.4006E-05 -0.32526 -0.00018742 -0.24889 -0.00014342 576.2282198030163 62.95 1.2332 59.989 59.5 60.733 -2.9614 0.1095 -9.9255E-05 NaN 13.042 86 35 3 NaN NaN NaN NaN 0 NaN NaN 0 3993900 31772 25690 21191 21206 -0.1268732068222107 NNSTFCMTAY 10 Unmodified _NNSTFCMTAY_ 0 0 0 SLC6A5|p.K342N|1|0.32|ENSG00000165970|chr11:20614719-20614719|G/T|missense_variant SLC6A5|p.K342N|1|0.32|ENSG00000165970|chr11:20614719-20614719|G/T|missense_variant SLC6A5|p.K342N|1|0.32|ENSG00000165970|chr11:20614719-20614719|G/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.228442 1150.44233 0.25786 0.00014859 -0.43705 -0.00025184 -0.17918 -0.00010325 576.2281062318832 63.254 1.1697 59.997 59.436 60.606 -3.2567 0.11753 -0.00022809 NaN 13.042 79 33 3 NaN NaN NaN NaN 0 NaN NaN 0 4861000 31773 25690 21191 21206 -0.1268732068222107 NNSYQLIAR 9 Unmodified _NNSYQLIAR_ 0 0 0 nc|ENSG00000133107|Q9UBN4-4|TRPC4 nc|ENSG00000133107|Q9UBN4-4|TRPC4 nc|ENSG00000133107|Q9UBN4-4|TRPC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013854980469 3 360.192845 1077.55671 -0.54639 -0.00019681 0.50345 0.00018134 -0.042937 -1.5466E-05 360.19294083078677 59.96 0.76847 59.96 59.612 60.381 0 42 21 3 0 0 0 0.68708 1 11450 11450 7.1017 0.47135 1 3277200 31774 12330 21192 21207 31393 31393 0.02103073186435722 NNTLLNKY 8 Unmodified _NNTLLNKY_ 0 0 0 tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1;tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1 tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26446533203125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 68.182 1 64.791 64.291 65.291 -3.3903 0 0 0 0.22636 1 12868 12868 2.643 0 1 31775 26071 21193 21208 31394 31394 0.023328834091330464 NNTLLNKY 8 Unmodified _NNTLLNKY_ 0 0 0 tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1;tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1 tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26446533203125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 68.205 1 64.814 64.314 65.314 -3.3903 0 0 0 0.20896 1 12871 12871 18.135 3.5533 1 31776 26071 21193 21208 31395 31395 0.023328834091330464 NNTLLNKY 8 Unmodified _NNTLLNKY_ 0 0 0 tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1;tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1 tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26519775390625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 68.428 1 65.038 64.538 65.538 -3.3903 0 0 0 0.22684 1 12917 12917 1.4551 0.77368 1 31777 26071 21193 21208 31396 31396 0.023328834091330464 NNTLLYILHYD 11 Unmodified _NNTLLYILHYD_ 0 0 0 nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV;ENST00000496854.1_1_2:187533488-187534577:+|nuORF nc|ENSG00000138448|P06756-2|ITGAV nc|ENSG00000138448|P06756-2|ITGAV MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2396545410156 3 460.238232 1377.69287 NaN NaN NaN NaN NaN NaN NaN 76.934 1 73.519 73.019 74.019 -3.4151 0 0 0 0.22632 1 15018 15018 5.4027 3.9476 1 31778 4173 21194 21209 31397 31397 0.019127229064451967 NNTQKPYRIR 10 Unmodified _NNTQKPYRIR_ 0 0 0 REV__L1PB1_dup6616|chr8:82292382-82293007:-|1.1358253178546305|0.0196351871970747|5.85|480.0|9|1|sense REV__L1PB1_dup6616|chr8:82292382-82293007:-|1.1358253178546305|0.0196351871970747|5.85|480.0|9|1|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1824645996094 4 323.182281 1288.70002 -0.50117 -0.00016197 0.59399 0.00019197 0.092816 2.9997E-05 323.18237051176663 16.502 0.37887 15.28 15.058 15.437 -1.2219 18 10 2 0 0 0 0.76625 1 2359 2359 0.62683 0.17231 1 367360 + 31779 23783 21195 21210 31398 31398 0.06721500297499006 NNTQKPYRIR 10 Unmodified _NNTQKPYRIR_ 0 0 0 REV__L1PB1_dup6616|chr8:82292382-82293007:-|1.1358253178546305|0.0196351871970747|5.85|480.0|9|1|sense REV__L1PB1_dup6616|chr8:82292382-82293007:-|1.1358253178546305|0.0196351871970747|5.85|480.0|9|1|sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 323.182281 1288.70002 -0.56958 -0.00018408 0.39831 0.00012873 -0.17127 -5.5352E-05 323.1823992184033 15.228 0.31351 15.228 15.052 15.365 0 -0.027411 -0.00012314 NaN 0.62683 16 8 3 NaN NaN NaN NaN 0 NaN NaN 0 685390 + 31780 23783 21195 21210 0.06721500297499006 NNTQKPYRIR 10 Unmodified _NNTQKPYRIR_ 0 0 0 REV__L1PB1_dup6616|chr8:82292382-82293007:-|1.1358253178546305|0.0196351871970747|5.85|480.0|9|1|sense REV__L1PB1_dup6616|chr8:82292382-82293007:-|1.1358253178546305|0.0196351871970747|5.85|480.0|9|1|sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 323.182281 1288.70002 -0.67007 -0.00021655 0.49667 0.00016052 -0.1734 -5.6038E-05 323.1824183640275 16.475 0.44809 15.259 15.046 15.495 -1.2159 0.0031484 4.02E-06 NaN 0.62683 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 897900 + 31781 23783 21195 21210 0.06721500297499006 NNTVRFNP 8 Unmodified _NNTVRFNP_ 0 0 0 ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z ENST00000513342.5_1_17:46990150-47004493:+|nuORF ENST00000513342.5_1_17:46990150-47004493:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2447509765625 2 481.246141 960.477728 NaN NaN NaN NaN NaN NaN NaN 91.531 1 87.436 86.936 87.936 -4.0946 0 0 0 0.22657 1 17438 17438 0.62683 0 1 31782 5195 21196 21211 31399 31399 -0.0040915404786119325 NNYQRRCK 8 Unmodified _NNYQRRCK_ 0 0 0 ENSG00000169385|ENST00000304625|RNASE2 ENSG00000169385|ENST00000304625|RNASE2 ENSG00000169385|ENST00000304625|RNASE2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2677001953125 2 541.269624 1080.5247 NaN NaN NaN NaN NaN NaN NaN 178.26 1 173.35 172.85 173.85 -4.9088 0 0 0 0.21486 1 35557 35557 2.5775 0.73324 1 31783 5981 21197 21212 31400 31400 -0.012346177683639326 NPALWLCL 8 Unmodified _NPALWLCL_ 0 0 0 ENST00000528300.5_1_14:50459574-50472442:-|nuORF;ENST00000529902.2_1_14:50466771-50470439:-|nuORF ENST00000528300.5_1_14:50459574-50472442:-|nuORF ENST00000528300.5_1_14:50459574-50472442:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24969482421875 2 465.249306 928.484059 NaN NaN NaN NaN NaN NaN NaN 163.85 1 159.06 158.56 159.56 -4.7898 0 0 0 0.21486 1 32693 32693 10.183 1.5901 1 31784 10934 21198 21213 31401 31401 0.016956478592987878 NPCHNQYN 8 Unmodified _NPCHNQYN_ 0 0 0 REV__LRP12|p.C451Afs*37|2|0.28|ENSG00000147650|chr8:104497201-104497201|A/-|frameshift_variant REV__LRP12|p.C451Afs*37|2|0.28|ENSG00000147650|chr8:104497201-104497201|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.0085144042969 3 330.467981 988.382113 -0.37794 -0.0001249 -0.053154 -1.7566E-05 -0.4311 -0.00014246 330.4679224751439 25.598 0.14265 25.598 25.526 25.669 0 5 3 2 0 0 0 1.0277 1 4449 4449 0.40072 0 1 787750 + 31785 16946 21199 21214 31402 31402 -0.1125425023041089 NPDQSKSGF 9 Unmodified _NPDQSKSGF_ 0 0 0 REV__nc|ENSG00000027869|Q9NP31-3|SH2D2A REV__nc|ENSG00000027869|Q9NP31-3|SH2D2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2667541503906 2 490.227613 978.440674 0.45032 0.00022076 -0.39068 -0.00019152 0.05964 2.9237E-05 490.2275643845299 44.119 1.8988 44.119 42.671 44.57 0 69 54 2 0 0 0 0.545 1 8161 8161 29.841 10.584 1 1164200 + 31786 14008 21200 21215 31403 31403 -0.04940870384268692 NPDYFFKEAN 10 Unmodified _NPDYFFKEAN_ 0 0 0 nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3;ENSG00000184005|ENST00000328299|ST6GALNAC3 nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3 nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.76806640625 2 622.782753 1243.55095 0.95789 0.00059656 -0.82493 -0.00051375 0.13296 8.2802E-05 622.7821732790296 45.096 0.25313 42.306 42.095 42.348 -2.79 8 6 2 0 0 0 0.86856 1 8468 8468 7.609 0 1 807150 31787 6885 21201 21216 31404 31404 -0.06108070115874398 NPEIKIRILG 10 Unmodified _NPEIKIRILG_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3391723632812 2 576.858598 1151.70264 -0.27743 -0.00016004 -3.7985 -0.0021912 -4.076 -0.0023513 576.8569468797078 38.928 0.1357 36.379 36.33 36.466 -2.5491 5 3 2 0 0 0 0.871 1 7224 7224 14.838 0 1 587950 31788 7532 21202 21217 31405 31405 0.1328595570246307 NPEVPVNF 8 Unmodified _NPEVPVNF_ 0 0 0 ENSG00000029993|ENST00000325307|HMGB3 ENSG00000029993|ENST00000325307|HMGB3 ENSG00000029993|ENST00000325307|HMGB3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2315673828125 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 128.95 1 124.32 123.82 124.82 -4.6292 0 0 0 0.22681 1 25423 25423 1.4551 0 1 31789 1153 21203 21218 31406 31406 -0.010864770279567892 NPGEDEYEKA 10 Unmodified _NPGEDEYEKA_ 0 0 0 ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3191528320312 2 576.2462 1150.47785 NaN NaN NaN NaN NaN NaN NaN 142.61 1 142.61 142.11 143.11 0 0 0 0 2.8426 1 28435 28435 5.8681 0 1 31790 3779 21204 21219 31407 31407 -0.09137243629174918 NPHGETLLY 9 Unmodified _NPHGETLLY_ 0 0 0 nc|ENSG00000056291|Q9Y5X5|NPFFR2;ENSG00000056291|ENST00000308744|NPFFR2;nc|ENSG00000056291|Q9Y5X5-3|NPFFR2;ENST00000506359.1_1_4:73012322-73013526:+|nuORF nc|ENSG00000056291|Q9Y5X5|NPFFR2 nc|ENSG00000056291|Q9Y5X5|NPFFR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2613525390625 2 522.261456 1042.50836 0.6486 0.00033874 -0.97085 -0.00050704 -0.32225 -0.0001683 522.2609599188614 79.504 0.86813 79.504 79.031 79.899 0 46 24 2 0 0 0 0.13708 1 15466 15466 46.021 5.5724 1 6833000 31791 12219 21205 21220 31408 31408 -0.011194204534604069 NPIKKLKKLL 10 Unmodified _NPIKKLKKLL_ 0 0 0 REV__tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 REV__tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 597.92041015625 2 597.918458 1193.82236 NaN NaN NaN NaN NaN NaN NaN 178.29 1 173.5 173 174 -4.7898 0 0 0 0.22588 1 36477 36477 0.40072 0.050084 1 + 31792 25102 21206 21221 31409 31409 0.23320569047041317 NPKKFKINY 9 Unmodified _NPKKFKINY_ 0 0 0 PAEP|p.V106A|1|0.48|ENSG00000122133|chr9:135564250-135564250|T/C|missense_variant;nc|ENSG00000122133|P09466-2|PAEP;ENSG00000122133|ENST00000479141|PAEP PAEP|p.V106A|1|0.48|ENSG00000122133|chr9:135564250-135564250|T/C|missense_variant PAEP|p.V106A|1|0.48|ENSG00000122133|chr9:135564250-135564250|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3317260742188 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 30.915 1 30.915 30.415 31.415 0 0 0 0 0.19632 1 5570 5570 0.40827 0 1 31793 3211 21207 21222 31410 31410 0.08057997639662062 NPKKFKINY 9 Unmodified _NPKKFKINY_ 0 0 0 PAEP|p.V106A|1|0.48|ENSG00000122133|chr9:135564250-135564250|T/C|missense_variant;nc|ENSG00000122133|P09466-2|PAEP;ENSG00000122133|ENST00000479141|PAEP PAEP|p.V106A|1|0.48|ENSG00000122133|chr9:135564250-135564250|T/C|missense_variant PAEP|p.V106A|1|0.48|ENSG00000122133|chr9:135564250-135564250|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33349609375 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 50.027 1 47.02 46.52 47.52 -3.0068 0 0 0 0.23508 1 9184 9184 12.532 1.7076 1 31794 3211 21207 21222 31411 31411 0.08057997639662062 NPKKVKHHF 9 Unmodified _NPKKVKHHF_ 0 0 0 HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|260|2|anti-sense HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|260|2|anti-sense HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|260|2|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 567.9950561523438 2 567.830175 1133.6458 -1.5904 -0.00090309 3.5991 0.0020437 2.0086 0.0011406 568.3333165016305 12.673 0.10211 11.552 11.484 11.586 -1.1206 4 2 2 0 0 0 0.65319 1 1523 1523 0.073264 0.071882 1 106110 31795 11886 21208 21223 31412 31412 0.08431952936598464 NPLEDDDDCQ 10 Unmodified _NPLEDDDDCQ_ 0 0 0 ENSG00000118308|ENST00000556887|IRAG2;nc|ENSG00000118308|Q12912|IRAG2 ENSG00000118308|ENST00000556887|IRAG2 ENSG00000118308|ENST00000556887|IRAG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 582.2969360351562 2 582.2115 1162.40845 NaN NaN NaN NaN NaN NaN NaN 172.63 1 167.75 167.25 168.25 -4.881 0 0 0 2.8426 1 34282 34282 0.20733 0.19905 1 31796 3028 21209 21224 31413 31413 -0.16626070640268154 NPLGCSSCYC 10 Unmodified _NPLGCSSCYC_ 0 0 0 LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2;LAMA2|p.V2281Cfs*12|1|0.36|ENSG00000196569|chr6:129456464-129456465|-/T|frameshift_variant;LAMA2|p.A2665Cfs*4|1|0.15|ENSG00000196569|chr6:129491988-129491989|-/G|frameshift_variant;LAMA2|p.N1765Mfs*26|1|0.4|ENSG00000196569|chr6:129393101-129393101|A/-|frameshift_variant LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6908569335938 2 523.690638 1045.36672 NaN NaN NaN NaN NaN NaN NaN 173.94 1 173.94 173.44 174.44 0 0 0 0 2.8426 1 35989 35989 0.013265 0.0049887 1 31797 7283 21210 21225 31414 31414 -0.1541462113414127 NPLPSSHMP 9 Unmodified _NPLPSSHMP_ 0 0 0 LCP2|p.T454Nfs*15|1|0.35|ENSG00000043462|chr5:170250848-170250849|-/T|frameshift_variant;ENSG00000043462|ENST00000046794|LCP2 LCP2|p.T454Nfs*15|1|0.35|ENSG00000043462|chr5:170250848-170250849|-/T|frameshift_variant LCP2|p.T454Nfs*15|1|0.35|ENSG00000043462|chr5:170250848-170250849|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2550354003906 2 490.236927 978.459301 0.21989 0.0001078 0.93937 0.00046051 1.1593 0.00056831 490.23731513096556 110.75 0.66887 110.75 110.47 111.14 0 36 18 3 0 0 0 0.69192 1 21750 21750 20.454 1.1966 1 3045200 31798 1206 21211 21226 31415 31415 -0.030790320140681615 NPLQGYYQV 9 Unmodified _NPLQGYYQV_ 0 0 0 nc|ENSG00000072071|O94910|ADGRL1;ENSG00000072071|ENST00000361434|ADGRL1 nc|ENSG00000072071|O94910|ADGRL1 nc|ENSG00000072071|O94910|ADGRL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2739868164062 2 541.269281 1080.52401 0.22656 0.00012263 -0.32504 -0.00017594 -0.098479 -5.3303E-05 541.2690324654778 94.383 0.2407 90.392 90.212 90.452 -3.9907 9 6 2 0 0 0 0.58804 1 18471 18471 13.906 13.906 1 906750 31799 1455 21212 21227 31416 31416 -0.01303133936426093 NPLQGYYQV 9 Unmodified _NPLQGYYQV_ 0 0 0 nc|ENSG00000072071|O94910|ADGRL1;ENSG00000072071|ENST00000361434|ADGRL1 nc|ENSG00000072071|O94910|ADGRL1 nc|ENSG00000072071|O94910|ADGRL1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.269281 1080.52401 0.22656 0.00012263 -0.32504 -0.00017594 -0.098479 -5.3303E-05 541.2690324654778 94.383 0.2407 90.392 90.212 90.452 -3.9907 0 0 NaN 13.906 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 906750 31800 1455 21212 21227 -0.01303133936426093 NPPQTRPP 8 Unmodified _NPPQTRPP_ 0 0 0 REV__ENST00000595618.5_2_19:17323264-17323441:+|nuORF REV__ENST00000595618.5_2_19:17323264-17323441:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75079345703125 2 453.743234 905.471915 NaN NaN NaN NaN NaN NaN NaN 37.261 1 34.923 34.423 35.423 -2.3375 0 0 0 0.21486 1 6590 6590 7.9102 0 1 + 31801 23376 21213 21228 31417 31417 0.015397474404608147 NPQHLDRPS 9 Unmodified _NPQHLDRPS_ 0 0 0 REV__ENSG00000091436|ENST00000375213|MAP3K20 REV__ENSG00000091436|ENST00000375213|MAP3K20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2709350585938 2 532.267604 1062.52066 -0.020773 -1.1057E-05 3.356 0.0017863 3.3352 0.0017752 532.2697143201748 14.756 0.42138 14.756 14.457 14.878 0 27 11 3 0 0 0 0.52396 1 2198 2198 18.146 6.5061 1 2575100 + 31802 14571 21214 21229 31418 31418 -0.008103839904379129 NPQHLDRPS 9 Unmodified _NPQHLDRPS_ 0 0 0 REV__ENSG00000091436|ENST00000375213|MAP3K20 REV__ENSG00000091436|ENST00000375213|MAP3K20 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.267604 1062.52066 -0.020773 -1.1057E-05 3.356 0.0017863 3.3352 0.0017752 532.2697143201748 14.756 0.42138 14.756 14.457 14.878 0 0.22905 0.0025884 NaN 18.146 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2575100 + 31803 14571 21214 21229 -0.008103839904379129 NPQHLDRPS 9 Unmodified _NPQHLDRPS_ 0 0 0 REV__ENSG00000091436|ENST00000375213|MAP3K20 REV__ENSG00000091436|ENST00000375213|MAP3K20 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.267604 1062.52066 -0.48384 -0.00025753 1.3932 0.00074157 0.90939 0.00048404 532.2683747228199 15.611 0.51835 14.395 14.101 14.619 -1.2159 -0.13151 0.00049901 NaN 18.146 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2439800 + 31804 14571 21214 21229 -0.008103839904379129 NPQHLDRPS 9 Unmodified _NPQHLDRPS_ 0 0 0 REV__ENSG00000091436|ENST00000375213|MAP3K20 REV__ENSG00000091436|ENST00000375213|MAP3K20 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.267604 1062.52066 -0.19413 -0.00010333 0.73123 0.00038921 0.53709 0.00028588 532.2679750118133 15.651 0.47733 14.429 14.166 14.644 -1.2219 -0.097548 -0.00020572 NaN 18.146 26 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1246700 + 31805 14571 21214 21229 -0.008103839904379129 NPRLNDDLS 9 Unmodified _NPRLNDDLS_ 0 0 0 REV__ZAN|p.D1695N|1|0.26|ENSG00000146839|chr7:100768651-100768651|G/A|missense_variant REV__ZAN|p.D1695N|1|0.26|ENSG00000146839|chr7:100768651-100768651|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2596435546875 2 522.259445 1042.50434 -0.004935 -2.5774E-06 -0.52275 -0.00027301 -0.52769 -0.00027559 522.7605501408594 19.929 0.38244 18.533 18.412 18.795 -1.3966 15 10 2 0 0 0 0.7009 1 3300 3300 6.2058 0.44535 1 947200 + 31806 25554 21215 21230 31419 31419 -0.015215099471788562 NPSKEVQNYEY 11 Unmodified _NPSKEVQNYEY_ 0 0 0 REV__ENSG00000197497|ENST00000396424|ZNF665 REV__ENSG00000197497|ENST00000396424|ZNF665 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 685.2832641601562 2 685.814781 1369.61501 0.27626 0.00018946 0.063686 4.3677E-05 0.33994 0.00023314 685.8147385585235 50.826 1.3516 47.781 47.224 48.576 -3.0453 104 38 4 0 0 0 0.96058 1 9230 9230 4.5289 3.047 1 6337900 + 31807 19342 21216 21231 31420 31420 -0.05501334749601483 NPSKEVQNYEY 11 Unmodified _NPSKEVQNYEY_ 0 0 0 REV__ENSG00000197497|ENST00000396424|ZNF665 REV__ENSG00000197497|ENST00000396424|ZNF665 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 685.814781 1369.61501 0.65267 0.00044761 -0.40495 -0.00027772 0.24772 0.00016989 685.8144026083206 50.73 1.3792 47.847 47.252 48.631 -2.8824 0.066258 -0.00044545 NaN 4.5289 95 38 3 NaN NaN NaN NaN 0 NaN NaN 0 5949000 + 31808 19342 21216 21231 -0.05501334749601483 NPSKEVQNYEY 11 Unmodified _NPSKEVQNYEY_ 0 0 0 REV__ENSG00000197497|ENST00000396424|ZNF665 REV__ENSG00000197497|ENST00000396424|ZNF665 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 685.814781 1369.61501 0.15408 0.00010567 0.037382 2.5637E-05 0.19146 0.00013131 685.8146818630229 50.767 1.5291 47.715 47.129 48.658 -3.0517 -0.065674 0.00016126 NaN 4.5289 115 43 4 NaN NaN NaN NaN 0 NaN NaN 0 6341300 + 31809 19342 21216 21231 -0.05501334749601483 NPSPRLGKQV 10 Unmodified _NPSPRLGKQV_ 0 0 0 ENST00000372406.5_1_9:132899739-132899880:+|nuORF ENST00000372406.5_1_9:132899739-132899880:+|nuORF ENST00000372406.5_1_9:132899739-132899880:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7722778320312 2 548.317097 1094.61964 0.3967 0.00021752 -2.6436 -0.0014495 -2.2469 -0.001232 548.3156049996007 90.078 0.46809 86.034 85.696 86.164 -4.0443 14 12 2 0 0 0 0.88533 1 17119 17119 13.042 9.0981 1 946170 31810 9179 21217 21232 31421 31421 0.07611638974458401 NPSPRLGKQV 10 Unmodified _NPSPRLGKQV_ 0 0 0 ENST00000372406.5_1_9:132899739-132899880:+|nuORF ENST00000372406.5_1_9:132899739-132899880:+|nuORF ENST00000372406.5_1_9:132899739-132899880:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 548.317097 1094.61964 0.10999 6.0308E-05 -3.7677 -0.0020659 -3.6577 -0.0020056 548.3148479037749 89.823 0.35883 85.963 85.795 86.154 -3.8595 -0.035464 -0.00070188 NaN 13.042 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 926460 31811 9179 21217 21232 0.07611638974458401 NPTLALRTL 9 Unmodified _NPTLALRTL_ 0 0 0 ENST00000392617.7_1_17:72741017-72741224:+|nuORF ENST00000392617.7_1_17:72741017-72741224:+|nuORF ENST00000392617.7_1_17:72741017-72741224:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 501.2879333496094 2 499.803291 997.59203 -0.083133 -4.155E-05 0.23947 0.00011969 0.15634 7.8137E-05 499.8033488771422 69.588 0.70958 66.408 66.046 66.755 -3.1796 53 19 4 0 0 0 0.25976 1 13545 13545 17.113 2.7075 1 21815000 31812 9377 21218 21233 31422 31422 0.0931373571424956 NPTLALRTL 9 Unmodified _NPTLALRTL_ 0 0 0 ENST00000392617.7_1_17:72741017-72741224:+|nuORF ENST00000392617.7_1_17:72741017-72741224:+|nuORF ENST00000392617.7_1_17:72741017-72741224:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 499.803291 997.59203 -0.13306 -6.6506E-05 0.26307 0.00013148 0.13001 6.4979E-05 499.8033622047743 66.609 0.80825 66.609 66.205 67.014 0 0.13262 0.00014304 NaN 17.113 60 22 4 NaN NaN NaN NaN 0 NaN NaN 0 30237000 31813 9377 21218 21233 0.0931373571424956 NPTLALRTL 9 Unmodified _NPTLALRTL_ 0 0 0 ENST00000392617.7_1_17:72741017-72741224:+|nuORF ENST00000392617.7_1_17:72741017-72741224:+|nuORF ENST00000392617.7_1_17:72741017-72741224:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 499.803291 997.59203 0.22269 0.0001113 -0.023905 -1.1948E-05 0.19879 9.9355E-05 499.80322855149296 70.022 0.76591 66.443 66.072 66.838 -3.5798 -0.033982 -0.00014382 NaN 17.113 60 21 4 NaN NaN NaN NaN 0 NaN NaN 0 17662000 31814 9377 21218 21233 0.0931373571424956 NPTLALRTL 9 Unmodified _NPTLALRTL_ 0 0 0 ENST00000392617.7_1_17:72741017-72741224:+|nuORF ENST00000392617.7_1_17:72741017-72741224:+|nuORF ENST00000392617.7_1_17:72741017-72741224:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 499.803291 997.59203 0.19127 9.5595E-05 -0.054279 -2.7129E-05 0.13699 6.8466E-05 499.8032517249154 69.913 0.73526 66.446 66.078 66.814 -3.467 -0.030179 -0.00017418 NaN 17.113 61 20 4 NaN NaN NaN NaN 0 NaN NaN 0 16405000 31815 9377 21218 21233 0.0931373571424956 NPVDYAVGK 9 Unmodified _NPVDYAVGK_ 0 0 0 REV__ENST00000419457.1_1_13:29297642-29297861:-|nuORF REV__ENST00000419457.1_1_13:29297642-29297861:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78704833984375 2 481.750724 961.486896 NaN NaN NaN NaN NaN NaN NaN 54.568 1 54.568 54.068 55.068 0 0 0 0 0.19721 1 10406 10406 24.021 0.87215 1 + 31816 13630 21219 21234 31423 31423 0.0046119451779986775 NPVSCAQVN 9 Unmodified _NPVSCAQVN_ 0 0 0 ENST00000464195.1_1_1:2523250-2524264:-|nuORF ENST00000464195.1_1_1:2523250-2524264:-|nuORF ENST00000464195.1_1_1:2523250-2524264:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.20611572265625 3 311.148248 930.422915 NaN NaN NaN NaN NaN NaN NaN 53.396 1 50.301 49.801 50.801 -3.0954 0 0 0 0.23508 1 9866 9866 2.4985 0 1 31817 10107 21220 21235 31424 31424 -0.04507908910795777 NPVVDYFPP 9 Unmodified _NPVVDYFPP_ 0 0 0 REV__ENST00000547632.1_1_12:52309584-52313004:+|nuORF REV__ENST00000547632.1_1_12:52309584-52313004:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6802978515625 2 524.260925 1046.5073 0.24773 0.00012987 -0.83974 -0.00044024 -0.59201 -0.00031037 524.2605282455056 38.15 0.2396 35.745 35.639 35.878 -2.4049 9 6 2 0 0 0 0.74655 1 6803 6803 15.847 0 1 1575900 + 31818 15406 21221 21236 31425 31425 -0.014096348223802124 NPVYAHKS 8 Unmodified _NPVYAHKS_ 0 0 0 REV__ENSG00000148468|ENST00000378116|FAM171A1 REV__ENSG00000148468|ENST00000378116|FAM171A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2395324707031 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 110.9 1 110.9 110.4 111.4 0 0 0 0 0.21486 1 21813 21813 9.3474 1.4373 1 + 31819 16977 21222 21237 31426 31426 0.00036345066178000707 NPYLFLGWI 9 Unmodified _NPYLFLGWI_ 0 0 0 tr|U7SKL9|U7SKL9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02074PE=4SV=1 tr|U7SKL9|U7SKL9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02074PE=4SV=1 tr|U7SKL9|U7SKL9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02074PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 374.8700866699219 3 374.870932 1121.59097 NaN NaN NaN NaN NaN NaN NaN 9.2501 1 8.2155 7.7155 8.7155 -1.0347 0 0 0 0.23508 1 928 928 0.26902 0 1 31820 25965 21223 21238 31427 31427 0.035035213453284086 NPYNSKRAE 9 Unmodified _NPYNSKRAE_ 0 0 0 ENSG00000180532|ENST00000318203|ZSCAN4 ENSG00000180532|ENST00000318203|ZSCAN4 ENSG00000180532|ENST00000318203|ZSCAN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2726440429688 2 539.767437 1077.52032 -0.39058 -0.00021082 0.61866 0.00033393 0.22808 0.00012311 539.7677454969887 16.294 1.4492 15.072 14.609 16.058 -1.2219 128 41 4 0 0 0 0.63326 1 2395 2395 6.7232 0 1 8310700 31821 6680 21224 21239 31428 31428 -0.015338037102765156 NQDQPDRIH 9 Unmodified _NQDQPDRIH_ 0 0 0 nc|ENSG00000106328|Q9NQT6-2|FSCN3;ENSG00000106328|ENST00000265825|FSCN3 nc|ENSG00000106328|Q9NQT6-2|FSCN3 nc|ENSG00000106328|Q9NQT6-2|FSCN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2171325683594 3 374.847738 1121.52138 -0.43624 -0.00016352 0.49922 0.00018713 0.062984 2.3609E-05 374.84793438788415 27.924 0.59129 25.928 25.682 26.273 -1.9962 19 16 2 0 0 0 0.87262 1 4720 4720 8.7454 7.7831 1 648180 31822 2377 21225 21240 31429 31429 -0.03451589341398176 NQEDRCAAA 9 Unmodified _NQEDRCAAA_ 0 0 0 nc|ENSG00000211448|Q92813-2|DIO2;ENSG00000211448|ENST00000438257|DIO2;ENST00000422005.7_2_14:80669058-80669397:-|nuORF nc|ENSG00000211448|Q92813-2|DIO2 nc|ENSG00000211448|Q92813-2|DIO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25811767578125 2 489.208898 976.403243 0.16924 8.2792E-05 -3.8432 -0.0018802 -3.674 -0.0017974 489.2061222632123 20.573 0.95275 20.573 20.134 21.087 0 49 26 3 0 0 0 0.60489 1 3395 3395 2.4985 0 1 772210 31823 7676 21226 21241 31430 31430 -0.08590284921558577 NQEHIPFPP 9 Unmodified _NQEHIPFPP_ 0 0 0 nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20123291015625 3 360.182058 1077.52434 -0.29521 -0.00010633 0.23715 8.5416E-05 -0.05806 -2.0912E-05 360.18209217832646 67.184 0.66495 64.075 63.756 64.421 -3.1086 64 18 4 0 0 0 0.77797 1 12964 12964 2.7352 0.23671 1 31491000 31824 5900 21227 21242 31431 31431 -0.01131714216603541 NQFINAFLD 9 Unmodified _NQFINAFLD_ 0 0 0 tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2685546875 2 541.269281 1080.52401 0.21225 0.00011488 -0.6732 -0.00036438 -0.46095 -0.0002495 541.2688654322277 95.492 1.0338 91.301 90.545 91.579 -4.1911 41 29 2 0 0 0 0.11717 3 18185 18185;18202;18235 49.933 0 1 1510500 31825 25932 21228 21243 31432;31433;31434 31432 -0.013031339364488304 NQFINAFLD 9 Unmodified _NQFINAFLD_ 0 0 0 tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2822265625 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 94.982 1 91.101 90.601 91.601 -3.881 0 0 0 0.054963 1 18224 18224 49.933 0 1 31826 25932 21228 21243 31435 31435 -0.013031339364488304 NQFINAFLD 9 Unmodified _NQFINAFLD_ 0 0 0 tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2688598632812 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 95.082 1 91.201 90.701 91.701 -3.881 0 0 0 0.054963 1 18243 18243 49.933 0 1 31827 25932 21228 21243 31436 31436 -0.013031339364488304 NQFNLFALD 9 Unmodified _NQFNLFALD_ 0 0 0 REV__ENST00000555629.1_1_14:35872865-35873850:-|nuORF REV__ENST00000555629.1_1_14:35872865-35873850:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2586669921875 2 541.269281 1080.52401 0.25106 0.00013589 2.2069 0.0011945 2.4579 0.0013304 541.2690758815806 95.306 1.2144 91.256 90.744 91.958 -4.0496 63 34 4 0 0 0 0.16619 3 18654 18649;18654;18698 41.84 0 1 2580900 + 31828 14748 21229 21244 31437;31438;31439 31438 -0.01303133936426093 NQFNLFALD 9 Unmodified _NQFNLFALD_ 0 0 0 REV__ENST00000555629.1_1_14:35872865-35873850:-|nuORF REV__ENST00000555629.1_1_14:35872865-35873850:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.269281 1080.52401 0.25106 0.00013589 2.2069 0.0011945 2.4579 0.0013304 541.2690758815806 95.306 1.2144 91.256 90.744 91.958 -4.0496 0.063014 6.8052E-05 NaN 41.84 63 34 4 NaN NaN NaN NaN 0 NaN NaN 0 2580900 + 31829 14748 21229 21244 -0.01303133936426093 NQFPGFKEV 9 Unmodified _NQFPGFKEV_ 0 0 0 ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2;ENSG00000077312|ENST00000243563|SNRPA ENST00000407763.2_1_6:149433147-149433330:-|nuORF ENST00000407763.2_1_6:149433147-149433330:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.271728515625 2 533.271824 1064.5291 0.41578 0.00022173 -0.41813 -0.00022297 -0.0023419 -1.2488E-06 533.271546008829 104.49 1.665 104.49 103.79 105.46 0 165 47 4 0 0 0 0.0024928 7 20595 20407;20455;20500;20548;20595;20646;20692 117.76 66.906 1 171780000 31830 1557 21230 21245 31440;31441;31442;31443;31444;31445;31446 31444 -0.0005883007379452465 NQFPGFKEV 9 Unmodified _NQFPGFKEV_ 0 0 0 ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2;ENSG00000077312|ENST00000243563|SNRPA ENST00000407763.2_1_6:149433147-149433330:-|nuORF ENST00000407763.2_1_6:149433147-149433330:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2717895507812 2 533.271824 1064.5291 -0.40797 -0.00021756 0.42219 0.00022514 0.014221 7.5835E-06 533.2719894927969 108.82 1.9464 104.45 103.67 105.62 -4.3776 195 55 5 0 0 0 0.019191 6 21443 21349;21398;21443;21492;21581;21585 93.166 73.15 1 182290000 31831 1557 21230 21245 31447;31448;31449;31450;31451;31452 31449 -0.0005883007379452465 NQFPGFKEV 9 Unmodified _NQFPGFKEV_ 0 0 0 ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2;ENSG00000077312|ENST00000243563|SNRPA ENST00000407763.2_1_6:149433147-149433330:-|nuORF ENST00000407763.2_1_6:149433147-149433330:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2718505859375 2 533.271824 1064.5291 0.23167 0.00012354 -0.010135 -5.4045E-06 0.22153 0.00011814 533.2717756385961 108.88 2.0157 104.43 103.57 105.59 -4.4518 173 57 4 0 0 0 0.007198 9 20943 20767;20780;20814;20855;20897;20940;20943;20991;21036 110.55 73.15 1 168030000 31832 1557 21230 21245 31453;31454;31455;31456;31457;31458;31459;31460;31461 31459 -0.0005883007379452465 NQFPGFKEV 9 Unmodified _NQFPGFKEV_ 0 0 0 ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2;ENSG00000077312|ENST00000243563|SNRPA ENST00000407763.2_1_6:149433147-149433330:-|nuORF ENST00000407763.2_1_6:149433147-149433330:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2720336914062 2 533.271824 1064.5291 0.72819 0.00038832 -0.60863 -0.00032456 0.11956 6.3757E-05 533.2714571641727 108.5 2.1367 104.37 103.7 105.83 -4.135 196 60 5 0 0 0 0.0024928 9 20857 20759;20765;20813;20857;20901;20902;20986;21042;21070 117.76 73.15 1 153590000 31833 1557 21230 21245 31462;31463;31464;31465;31466;31467;31468;31469;31470 31465 -0.0005883007379452465 NQFQTFLPS 9 Unmodified _NQFQTFLPS_ 0 0 0 UNC79|p.F2181Lfs*10|2|0.33|ENSG00000133958|chr14:93655372-93655372|T/-|frameshift_variant UNC79|p.F2181Lfs*10|2|0.33|ENSG00000133958|chr14:93655372-93655372|T/-|frameshift_variant UNC79|p.F2181Lfs*10|2|0.33|ENSG00000133958|chr14:93655372-93655372|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2688598632812 2 541.269281 1080.52401 0.21225 0.00011488 -0.6732 -0.00036438 -0.46095 -0.0002495 541.2688654322277 95.492 1.0338 91.301 90.545 91.579 -4.1911 41 29 2 0 0 0 0.34411 1 18100 18100 29.082 1.4528 1 1510500 31834 26553 21231 21246 31471 31471 -0.01303133936426093 NQFTQNKW 8 Unmodified _NQFTQNKW_ 0 0 0 REV__MPHOSPH9|p.K886Rfs*15|1|0.31|ENSG00000051825|chr12:123165407-123165414|TTTGCTTT/-|frameshift_variant REV__MPHOSPH9|p.K886Rfs*15|1|0.31|ENSG00000051825|chr12:123165407-123165414|TTTGCTTT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2609252929688 2 533.259248 1064.50394 0.19481 0.00010389 -0.16979 -9.0541E-05 0.025026 1.3345E-05 533.7606365975204 110.38 0.66556 105.89 105.59 106.25 -4.4915 28 18 2 0 0 0 0.66265 1 21175 21175 18.135 1.1927 1 1238600 + 31835 14090 21232 21247 31472 31472 -0.025728848763719725 NQFTQNKW 8 Unmodified _NQFTQNKW_ 0 0 0 REV__MPHOSPH9|p.K886Rfs*15|1|0.31|ENSG00000051825|chr12:123165407-123165414|TTTGCTTT/-|frameshift_variant REV__MPHOSPH9|p.K886Rfs*15|1|0.31|ENSG00000051825|chr12:123165407-123165414|TTTGCTTT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2695922851562 2 533.259248 1064.50394 0.19481 0.00010389 -0.16979 -9.0541E-05 0.025026 1.3345E-05 533.7606365975204 110.38 0.66556 105.89 105.59 106.25 -4.4915 28 18 2 0 0 0 0.97173 1 21166 21166 18.135 10.846 1 1238600 + 31836 14090 21232 21247 31473 31473 -0.025728848763719725 NQFTQNKW 8 Unmodified _NQFTQNKW_ 0 0 0 REV__MPHOSPH9|p.K886Rfs*15|1|0.31|ENSG00000051825|chr12:123165407-123165414|TTTGCTTT/-|frameshift_variant REV__MPHOSPH9|p.K886Rfs*15|1|0.31|ENSG00000051825|chr12:123165407-123165414|TTTGCTTT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2685546875 2 533.259248 1064.50394 0.6948 0.00037051 -1.0109 -0.00053905 -0.31607 -0.00016855 533.2586172982163 109.9 0.87226 105.71 105.44 106.31 -4.1826 39 24 2 0 0 0 0.93477 1 21117 21117 18.135 0 1 1094100 + 31837 14090 21232 21247 31474 31474 -0.025728848763719725 NQGGLPGA 8 Unmodified _NQGGLPGA_ 0 0 0 nc|ENSG00000110148|P32239-3|CCKBR;ENSG00000110148|ENST00000334619|CCKBR nc|ENSG00000110148|P32239-3|CCKBR nc|ENSG00000110148|P32239-3|CCKBR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5565490722656 2 357.182478 712.350402 NaN NaN NaN NaN NaN NaN NaN 98.624 1 98.624 98.124 99.124 0 0 0 0 0.23749 1 19332 19332 0.25148 0.12861 1 31838 2567 21233 21248 31475 31475 -0.017278749220622558 NQIINIISE 9 Unmodified _NQIINIISE_ 0 0 0 EPM2AIP1|p.T300I|1|0.22|ENSG00000178567|chr3:36992179-36992179|G/A|missense_variant EPM2AIP1|p.T300I|1|0.22|ENSG00000178567|chr3:36992179-36992179|G/A|missense_variant EPM2AIP1|p.T300I|1|0.22|ENSG00000178567|chr3:36992179-36992179|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2566528320312 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 87.065 1 87.065 86.565 87.565 0 0 0 0 0.21844 1 16992 16992 18.146 0 1 31839 11776 21234 21249 31476 31476 0.046294217521108294 NQKERRADY 9 Unmodified _NQKERRADY_ 0 0 0 REV__ENSG00000283439|ENST00000636696|SPEM3 REV__ENSG00000283439|ENST00000636696|SPEM3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2708740234375 2 590.296893 1178.57923 NaN NaN NaN NaN NaN NaN NaN 120.45 1 115.92 115.42 116.42 -4.5221 0 0 0 0.23508 1 23748 23748 7.2892 1.0834 1 + 31840 19957 21235 21250 31477 31477 -0.0029132741597095446 NQLRNKLS 8 Unmodified _NQLRNKLS_ 0 0 0 ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant;ENSG00000170396|ENST00000302277|ZNF804A ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.19207763671875 3 324.857686 971.551228 -0.44725 -0.00014529 0.30826 0.00010014 -0.13899 -4.5151E-05 324.8577418609269 32.03 0.48358 32.03 31.879 32.363 0 23 13 2 0 0 0 8448 1 5795 5795 20.454 0 1 1533900 31841 6067 21236 21251 31478 31478 0.06431394394610379 NQMPTQPQV 9 Unmodified _NQMPTQPQV_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279541015625 2 521.752941 1041.49133 -0.072437 -3.7794E-05 0.10701 5.5831E-05 0.034569 1.8036E-05 521.7529784037428 58.111 0.75914 58.111 57.718 58.477 0 59 21 4 0 0 0 0.051332 1 11090 11090 70.332 46.311 1 17224000 31842 1969 21237 21252 31479 31479 -0.02775664330943073 NQMPTQPQV 9 Unmodified _NQMPTQPQV_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2662963867188 2 521.752941 1041.49133 -0.20148 -0.00010512 -0.038303 -1.9985E-05 -0.23979 -0.00012511 521.7530040863086 61.331 0.82361 58.37 57.968 58.792 -2.9614 72 23 5 0 0 0 4.2723E-17 1 11785 11785 171.09 112.41 1 46066000 31843 1969 21237 21252 31480 31480 -0.02775664330943073 NQMPTQPQV 9 Unmodified _NQMPTQPQV_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2799682617188 2 521.752941 1041.49133 -0.6034 -0.00031483 0.55001 0.00028697 -0.053389 -2.7856E-05 521.7532831012032 61.706 0.91958 58.337 58.002 58.922 -3.3694 78 25 4 0 0 0 2.219E-07 1 11502 11502 145.13 86.451 1 34856000 31844 1969 21237 21252 31481 31481 -0.02775664330943073 NQMPTQPQV 9 Unmodified _NQMPTQPQV_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2717895507812 2 521.752941 1041.49133 0.24501 0.00012784 -0.34755 -0.00018134 -0.10254 -5.35E-05 521.752837462831 61.61 0.93348 58.371 57.926 58.86 -3.2395 78 26 4 0 0 0 0.31673 1 11580 11580 39.95 22.837 1 27381000 31845 1969 21237 21252 31482 31482 -0.02775664330943073 NQPPCLDS 8 Unmodified _NQPPCLDS_ 0 0 0 ENST00000493032.5_1_1:46714192-46726402:+|nuORF;ENST00000487700.1_1_1:46714192-46733228:+|nuORF;ENST00000463715.5_3_1:46714207-46726591:+|nuORF;RAD54L|p.P433Tfs*7|1|0.32|ENSG00000085999|chr1:46272720-46272721|-/A|frameshift_variant;RAD54L|p.G577Afs*65|1|0.22|ENSG00000085999|chr1:46274574-46274574|G/-|frameshift_variant;ENSG00000085999|ENST00000371975|RAD54L ENST00000493032.5_1_1:46714192-46726402:+|nuORF ENST00000493032.5_1_1:46714192-46726402:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2276611328125 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 77.052 1 73.599 73.099 74.099 -3.4532 0 0 0 0.2343 1 15041 15041 0.12286 0 1 31846 1688 21238 21253 31483 31483 -0.07147286693464139 NQQTDRDDSET 11 Unmodified _NQQTDRDDSET_ 0 0 0 ENSG00000136002|ENST00000409359|ARHGEF4 ENSG00000136002|ENST00000409359|ARHGEF4 ENSG00000136002|ENST00000409359|ARHGEF4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2175598144531 3 436.848132 1307.52257 NaN NaN NaN NaN NaN NaN NaN 99.543 1 95.411 94.911 95.911 -4.1326 0 0 0 0.23698 1 19556 19556 2.6312 0 1 31847 3975 21239 21254 31484 31484 -0.11889464553792095 NQRFKRKDRM 10 Unmodified _NQRFKRKDRM_ 0 0 0 ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF ENSG00000136451|ENST00000581208|VEZF1 ENSG00000136451|ENST00000581208|VEZF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2396545410156 3 460.254333 1377.74117 0.20656 9.5069E-05 -0.61422 -0.0002827 -0.40766 -0.00018763 460.2540634905573 113.09 0.74681 113.09 112.6 113.34 0 41 21 3 0 0 0 0.47611 1 22240 22240 6.6304 5.2229 1 3360300 31848 4012 21240 21255 31485 31485 0.06740938065331648 NQRFKRKDRM 10 Unmodified _NQRFKRKDRM_ 0 0 0 ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF ENSG00000136451|ENST00000581208|VEZF1 ENSG00000136451|ENST00000581208|VEZF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23223876953125 3 460.254333 1377.74117 0.21333 9.8184E-05 -0.50064 -0.00023042 -0.28732 -0.00013224 460.25399148270566 117.81 0.56069 117.81 117.48 118.04 0 26 15 2 0 0 0 0.47611 2 23155 23155;23166 6.6304 1.2277 1 2490700 31849 4012 21240 21255 31486;31487 31486 0.06740938065331648 NQRFKRKDRM 10 Unmodified _NQRFKRKDRM_ 0 0 0 ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF ENSG00000136451|ENST00000581208|VEZF1 ENSG00000136451|ENST00000581208|VEZF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23358154296875 3 460.254333 1377.74117 0.1421 6.5403E-05 -0.42886 -0.00019738 -0.28676 -0.00013198 460.25403539047056 121.9 0.8197 117.35 116.89 117.71 -4.5476 41 22 3 0 0 0 0.51405 1 24086 24086 3.8763 0.80407 1 1398800 31850 4012 21240 21255 31488 31488 0.06740938065331648 NQRFKRKDRM 10 Unmodified _NQRFKRKDRM_ 0 0 0 ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF ENSG00000136451|ENST00000581208|VEZF1 ENSG00000136451|ENST00000581208|VEZF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24298095703125 3 460.254333 1377.74117 0.50245 0.00023125 -0.51943 -0.00023907 -0.016985 -7.8172E-06 460.254082825841 121.91 0.70616 117.22 116.87 117.58 -4.6873 49 19 4 0 0 0 0.51405 1 23386 23386 3.8763 0.80407 1 2708900 31851 4012 21240 21255 31489 31489 0.06740938065331648 NQRFKRKDRM 10 Unmodified _NQRFKRKDRM_ 0 0 0 ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF ENSG00000136451|ENST00000581208|VEZF1 ENSG00000136451|ENST00000581208|VEZF1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 460.254333 1377.74117 0.1421 6.5403E-05 -0.42886 -0.00019738 -0.28676 -0.00013198 460.25403539047056 121.9 0.8197 117.35 116.89 117.71 -4.5476 0.073337 4.3343E-05 NaN 3.8763 41 22 3 NaN NaN NaN NaN 0 NaN NaN 0 1398800 31852 4012 21240 21255 0.06740938065331648 NQRFKRKDRM 10 Unmodified _NQRFKRKDRM_ 0 0 0 ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF ENSG00000136451|ENST00000581208|VEZF1 ENSG00000136451|ENST00000581208|VEZF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 460.254333 1377.74117 0.32309 0.0001487 -0.45219 -0.00020812 -0.1291 -5.9417E-05 460.2540346399178 121.8 0.7988 117.27 116.86 117.66 -4.5305 -0.015687 1.1133E-05 NaN 3.8763 43 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3595900 31853 4012 21240 21255 0.06740938065331648 NQSDCRWH 8 Unmodified _NQSDCRWH_ 0 0 0 REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6829833984375 2 523.217057 1044.41956 -0.035247 -1.8442E-05 -2.5173 -0.0013171 -2.5525 -0.0013355 523.2149789171307 93.025 0.099907 93.025 92.959 93.059 0 4 2 2 0 0 0 8448 1 18191 18191 1.7423 0 1 633260 + 31854 18047 21241 21256 31490 31490 -0.10087158964802256 NQSQTQPL 8 Unmodified _NQSQTQPL_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1;CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant;CCAR1|p.E816Kfs*75|1|0.25|ENSG00000060339|chr10:68771347-68771347|A/-|frameshift_variant nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2308654785156 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 179.33 1 174.46 173.96 174.96 -4.868 0 0 0 0.21486 1 35715 35715 7.9102 1.5561 1 31855 1307 21242 21257 31491 31491 -0.0148856652166387 NQSWQENCDH 10 Unmodified _NQSWQENCDH_ 0 0 0 GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000149403|ENST00000527524|GRIK4 GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant GRIK4|p.T481Rfs*6|1|0.57|ENSG00000149403|chr11:120905452-120905468|AACGGCACCTGGACGGG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7655639648438 2 630.738551 1259.46255 NaN NaN NaN NaN NaN NaN NaN 163.64 1 163.64 163.14 164.14 0 0 0 0 2.8426 1 32999 32999 0.0013812 0.0013812 1 31856 4789 21243 21258 31492 31492 -0.15680433698025809 NQTPTKKY 8 Unmodified _NQTPTKKY_ 0 0 0 ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2644348144531 2 490.263999 978.513445 0.081648 4.0029E-05 -0.13587 -6.661E-05 -0.054218 -2.6581E-05 490.26389789986007 67.31 0.62753 63.983 63.791 64.419 -3.3268 34 17 3 0 0 0 0.62642 1 12774 12774 20.454 4.6064 1 2246700 31857 4107 21244 21259 31493 31493 0.023328834091330464 NQVIFPVSY 9 Unmodified _NQVIFPVSY_ 0 0 0 ENST00000467022.1_1_3:113442441-113464796:-|nuORF;NAA50|p.D103Mfs*40|2|0.21|ENSG00000121579|chr3:113722932-113722932|T/-|frameshift_variant;ENSG00000121579|ENST00000240922|NAA50;nc|ENSG00000121579|Q9GZZ1-2|NAA50 ENST00000467022.1_1_3:113442441-113464796:-|nuORF ENST00000467022.1_1_3:113442441-113464796:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2867431640625 2 533.782025 1065.5495 0.12312 6.5718E-05 0.1577 8.418E-05 0.28082 0.0001499 533.7820239689321 150.81 1.0914 150.81 150.36 151.45 0 92 30 4 0 0 0 4.3823E-06 1 30216 30216 133.7 85.356 1 54559000 31858 3184 21245 21260 31494 31494 0.01934340586012695 NQVIFPVSY 9 Unmodified _NQVIFPVSY_ 0 0 0 ENST00000467022.1_1_3:113442441-113464796:-|nuORF;NAA50|p.D103Mfs*40|2|0.21|ENSG00000121579|chr3:113722932-113722932|T/-|frameshift_variant;ENSG00000121579|ENST00000240922|NAA50;nc|ENSG00000121579|Q9GZZ1-2|NAA50 ENST00000467022.1_1_3:113442441-113464796:-|nuORF ENST00000467022.1_1_3:113442441-113464796:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2685546875 2 533.782025 1065.5495 0.23461 0.00012523 0.13709 7.3175E-05 0.3717 0.0001984 533.7820166958517 156 1.1189 151.22 150.66 151.78 -4.7791 107 31 5 0 0 0 1.6139E-19 1 31000 31000 164.52 112.25 1 66878000 31859 3184 21245 21260 31495 31495 0.01934340586012695 NQVIFPVSY 9 Unmodified _NQVIFPVSY_ 0 0 0 ENST00000467022.1_1_3:113442441-113464796:-|nuORF;NAA50|p.D103Mfs*40|2|0.21|ENSG00000121579|chr3:113722932-113722932|T/-|frameshift_variant;ENSG00000121579|ENST00000240922|NAA50;nc|ENSG00000121579|Q9GZZ1-2|NAA50 ENST00000467022.1_1_3:113442441-113464796:-|nuORF ENST00000467022.1_1_3:113442441-113464796:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2642822265625 2 533.782025 1065.5495 0.51527 0.00027504 -0.1929 -0.00010296 0.32238 0.00017208 533.7818222543658 156.52 1.1472 151.23 150.69 151.83 -5.2854 107 32 5 0 0 0 2.0473E-16 1 30341 30341 156.16 101.38 1 55081000 31860 3184 21245 21260 31496 31496 0.01934340586012695 NQVIFPVSY 9 Unmodified _NQVIFPVSY_ 0 0 0 ENST00000467022.1_1_3:113442441-113464796:-|nuORF;NAA50|p.D103Mfs*40|2|0.21|ENSG00000121579|chr3:113722932-113722932|T/-|frameshift_variant;ENSG00000121579|ENST00000240922|NAA50;nc|ENSG00000121579|Q9GZZ1-2|NAA50 ENST00000467022.1_1_3:113442441-113464796:-|nuORF ENST00000467022.1_1_3:113442441-113464796:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2677612304688 2 533.782025 1065.5495 0.46508 0.00024825 -0.23803 -0.00012705 0.22705 0.0001212 533.7818208967263 156.38 1.2393 151.11 150.59 151.83 -5.2712 97 34 4 0 0 0 2.0473E-16 1 30303 30303 156.16 118.18 1 62976000 31861 3184 21245 21260 31497 31497 0.01934340586012695 NQVLVEDNL 9 Unmodified _NQVLVEDNL_ 0 0 0 tr|U7SQT5|U7SQT5_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01682PE=4SV=1 tr|U7SQT5|U7SQT5_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01682PE=4SV=1 tr|U7SQT5|U7SQT5_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01682PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2717895507812 2 522.272021 1042.52949 0.2577 0.00013459 -2.8572 -0.0014922 -2.5995 -0.0013576 522.2718289362009 62.031 0.65776 58.791 58.448 59.105 -3.2395 30 18 2 0 0 0 0.46541 1 11580 11580 21.747 6.9084 1 1251900 31862 26062 21246 21261 31498 31498 0.009925448553758542 NQVLWRSY 8 Unmodified _NQVLWRSY_ 0 0 0 ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF ENSG00000119720|ENST00000354366|NRDE2 ENSG00000119720|ENST00000354366|NRDE2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.283935546875 2 533.277441 1064.54033 NaN NaN NaN NaN NaN NaN NaN 156.79 1 151.52 151.02 152.02 -5.2712 0 0 0 0.12938 1 30414 30414 40.449 26.941 1 31863 3098 21247 21262 31499 31499 0.01063992020317528 NQWRQQNQRYF 11 Unmodified _NQWRQQNQRYF_ 0 0 0 REV__nc|ENSG00000125798|Q9Y261|FOXA2 REV__nc|ENSG00000125798|Q9Y261|FOXA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3820190429688 2 784.37928 1566.74401 0.51907 0.00040715 1.7431 0.0013673 2.2622 0.0017744 784.3804641284851 132.02 0.52496 127.38 127.1 127.62 -4.6399 30 14 3 0 0 0 0.66087 1 26002 26002 1.4551 1.2831 1 3935000 + 31864 15830 21248 21263 31500 31500 -0.01669515276171296 NRALIQYF 8 Unmodified _NRALIQYF_ 0 0 0 ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1 ENSG00000169727|ENST00000578552|GPS1 ENSG00000169727|ENST00000578552|GPS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.1539611816406 3 342.190665 1023.55016 NaN NaN NaN NaN NaN NaN NaN 86.288 1 82.338 81.838 82.838 -3.9503 0 0 0 0.21486 1 16424 16424 3.5965 0 1 31865 6003 21249 21264 31501 31501 0.039331800256945826 NRARRRQS 8 Unmodified _NRARRRQS_ 0 0 0 sp|Q7M6G6|US34A_HCMVAUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainAD169)OX=10360GN=US34APE=3SV=1;sp|Q6SVX3|US34A_HCMVMUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US34APE=3SV=1 sp|Q7M6G6|US34A_HCMVAUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainAD169)OX=10360GN=US34APE=3SV=1 sp|Q7M6G6|US34A_HCMVAUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainAD169)OX=10360GN=US34APE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2721557617188 2 522.300104 1042.58566 NaN NaN NaN NaN NaN NaN NaN 27.048 1 25.126 24.626 25.626 -1.9222 0 0 0 0.21486 1 4502 4502 4.3292 0 1 31866 25764 21250 21265 31502 31502 0.06606655326072541 NRCRRRPPP 9 Unmodified _NRCRRRPPP_ 0 0 0 ENST00000542438.1_1_12:120972159-120972757:+|nuORF ENST00000542438.1_1_12:120972159-120972757:+|nuORF ENST00000542438.1_1_12:120972159-120972757:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3201904296875 2 576.319983 1150.62541 NaN NaN NaN NaN NaN NaN NaN 152.74 1 147.52 147.02 148.02 -5.2209 0 0 0 0.19632 1 29605 29605 0.40827 0.36448 1 31867 11087 21251 21266 31503 31503 0.05612459005146775 NRDEFNTN 8 Unmodified _NRDEFNTN_ 0 0 0 REV__ENSG00000273749|ENST00000617928|CYFIP1 REV__ENSG00000273749|ENST00000617928|CYFIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.80157470703125 3 337.149305 1008.42609 -0.71705 -0.00024175 0.23353 7.8736E-05 -0.48351 -0.00016302 337.1493547814987 54.667 2.0537 51.529 50.816 52.87 -3.1377 74 58 2 0 0 0 0.88685 1 10198 10198 0.68139 0.55853 1 12805000 + 31868 19922 21252 21267 31504 31504 -0.0777894253243403 NRDRNGDREQD 11 Unmodified _NRDRNGDREQD_ 0 0 0 REV__nc|ENSG00000140832|Q96A59-3|MARVELD3 REV__nc|ENSG00000140832|Q96A59-3|MARVELD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.92230224609375 3 458.875015 1373.60322 NaN NaN NaN NaN NaN NaN NaN 11.524 1 10.62 10.12 11.12 -0.90401 0 0 0 0.23698 1 1532 1532 0 0 1 + 31869 16599 21253 21268 31505 31505 -0.06864138720243318 NRGRFFNKL 9 Unmodified _NRGRFFNKL_ 0 0 0 REV__ENST00000511203.1_1_4:100869836-100870579:-|nuORF REV__ENST00000511203.1_1_4:100869836-100870579:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3204956054688 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 124.58 1 119.98 119.48 120.48 -4.5984 0 0 0 0.19684 1 24567 24567 0.029283 0 1 + 31870 22545 21254 21269 31506 31506 0.06666764931219404 NRHYTFYVWKR 11 Unmodified _NRHYTFYVWKR_ 0 0 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10 ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4047241210938 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 76.411 1 72.996 72.496 73.496 -3.4151 0 0 0 0.23379 1 14914 14914 5.2969 2.0156 1 31871 4223 21255 21270 31507 31507 0.03841737631273645 NRHYTFYVWKR 11 Unmodified _NRHYTFYVWKR_ 0 0 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10 ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4038696289062 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 111.8 1 107.31 106.81 107.81 -4.4915 0 0 0 0.2367 1 21461 21461 2.9952 1.6657 1 31872 4223 21255 21270 31508 31508 0.03841737631273645 NRHYTFYVWKR 11 Unmodified _NRHYTFYVWKR_ 0 0 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10 ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.40380859375 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 111.58 1 107.35 106.85 107.85 -4.2289 0 0 0 0.2367 1 21479 21479 2.9952 1.5133 1 31873 4223 21255 21270 31509 31509 0.03841737631273645 NRIRLWRHRLS 11 Unmodified _NRIRLWRHRLS_ 0 0 0 ENST00000367478.8_1_1:186306158-186307193:-|nuORF ENST00000367478.8_1_1:186306158-186307193:-|nuORF ENST00000367478.8_1_1:186306158-186307193:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 502.9129943847656 3 502.967404 1505.88038 NaN NaN NaN NaN NaN NaN NaN 145.48 1 145.48 144.98 145.98 0 0 0 0 0.23698 1 29076 29076 1.1098 0.65524 1 31874 9068 21256 21271 31510 31510 0.14767643745017267 NRIYRLLM 8 Unmodified _NRIYRLLM_ 0 0 0 REV__ENST00000462290.1_1_2:197122524-197143302:-|nuORF REV__ENST00000462290.1_1_2:197122524-197143302:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2125549316406 3 360.211183 1077.61172 NaN NaN NaN NaN NaN NaN NaN 143.8 1 138.9 138.4 139.4 -4.8982 0 0 0 0.21486 1 27755 27755 1.8442 0.77278 1 + 31875 21901 21257 21272 31511 31511 0.07601788453325753 NRKIRKNWSY 10 Unmodified _NRKIRKNWSY_ 0 0 0 REV__COL4A6|p.G867Rfs*77|1|0.35|ENSG00000197565|chrX:108176931-108176932|-/T|frameshift_variant REV__COL4A6|p.G867Rfs*77|1|0.35|ENSG00000197565|chrX:108176931-108176932|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 455.2392883300781 3 455.58971 1363.7473 0.032217 1.4678E-05 -0.94804 -0.00043192 -0.91582 -0.00041724 455.58924790610166 59.362 0.60488 56.048 55.707 56.312 -3.3139 44 16 3 0 0 0 1.1318 1 10985 10985 0.063865 0.037659 1 4991500 + 31876 13490 21258 21273 31512 31512 0.07997779568540864 NRKLVKSV 8 Unmodified _NRKLVKSV_ 0 0 0 REV__tr|U7SWK3|U7SWK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01076PE=4SV=1 REV__tr|U7SWK3|U7SWK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01076PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.2066955566406 3 315.206426 942.597449 NaN NaN NaN NaN NaN NaN NaN 99.132 1 99.132 98.632 99.632 0 0 0 0 0.2386 1 19440 19440 0.0082765 0 1 + 31877 25203 21259 21274 31513 31513 0.12385459296717727 NRKRLKRFLPR 11 Unmodified _NRKRLKRFLPR_ 0 0 0 REV__ENSG00000165630|ENST00000378572|PRPF18 REV__ENSG00000165630|ENST00000378572|PRPF18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3895263671875 2 742.47586 1482.93717 NaN NaN NaN NaN NaN NaN NaN 171.93 1 167.06 166.56 167.56 -4.873 0 0 0 0.22632 1 34090 34090 0.00056442 0 1 + 31878 17786 21260 21275 31514 31514 0.2150169130152335 NRKVHFFTNCK 11 Unmodified _NRKVHFFTNCK_ 0 0 0 ENST00000502740.1_1_8:15664207-15664498:-|nuORF ENST00000502740.1_1_8:15664207-15664498:-|nuORF ENST00000502740.1_1_8:15664207-15664498:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.241943359375 3 465.243434 1392.70847 NaN NaN NaN NaN NaN NaN NaN 59.54 1 59.54 59.04 60.04 0 0 0 0 0.22632 1 11407 11407 0.172 0.077159 1 31879 10632 21261 21276 31515 31515 0.027827309424992563 NRKWYLVQHQR 11 Unmodified _NRKWYLVQHQR_ 0 0 0 ZNF550|p.R220Q|1|0.06|ENSG00000251369|chr19:57547585-57547585|C/T|missense_variant ZNF550|p.R220Q|1|0.06|ENSG00000251369|chr19:57547585-57547585|C/T|missense_variant ZNF550|p.R220Q|1|0.06|ENSG00000251369|chr19:57547585-57547585|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 764.3314819335938 2 764.418208 1526.82186 NaN NaN NaN NaN NaN NaN NaN 172.78 1 167.9 167.4 168.4 -4.881 0 0 0 0.22632 1 34320 34320 0.172 0 1 31880 26628 21262 21277 31516 31516 0.07952542379848637 NRLVKAVPRV 10 Unmodified _NRLVKAVPRV_ 0 0 0 REV__CASP8AP2|p.N1236Ifs*9|1|0.3|ENSG00000118412|chr6:89866990-89866990|A/-|frameshift_variant REV__CASP8AP2|p.N1236Ifs*9|1|0.3|ENSG00000118412|chr6:89866990-89866990|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3374633789062 2 576.372207 1150.72986 NaN NaN NaN NaN NaN NaN NaN 178.47 1 178.47 177.97 178.97 0 0 0 0 0.22588 1 36972 36972 1.4819 0.15237 1 + 31881 13266 21263 21278 31517 31517 0.1605248403348014 NRPINRPMS 9 Unmodified _NRPINRPMS_ 0 0 0 REV__SLIT2|p.V49M|2|0.37|ENSG00000145147|chr4:20253960-20253960|G/A|missense_variant REV__SLIT2|p.V49M|2|0.37|ENSG00000145147|chr4:20253960-20253960|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.1954650878906 3 362.194192 1083.56075 NaN NaN NaN NaN NaN NaN NaN 136.99 1 132.35 131.85 132.85 -4.6413 0 0 0 0.23508 1 27034 27034 1.0715 0.10919 1 + 31882 24654 21264 21279 31518 31518 0.02230839408503016 NRQGQGSHY 9 Unmodified _NRQGQGSHY_ 0 0 0 ENSG00000215853|ENST00000316073|RPTN ENSG00000215853|ENST00000316073|RPTN ENSG00000215853|ENST00000316073|RPTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6897583007812 2 523.741754 1045.46895 -0.29415 -0.00015406 0.47783 0.00025026 0.18368 9.6199E-05 523.7419888395506 126.68 0.95652 121.89 121.57 122.52 -4.7958 92 26 5 0 0 0 0.69192 1 24268 24268 20.454 0 1 40116000 31883 7753 21265 21280 31519 31519 -0.05196127684325802 NRRFQNSTNCN 11 Unmodified _NRRFQNSTNCN_ 0 0 0 REV__ENST00000389032.7_1_12:27475708-27475780:+|nuORF REV__ENST00000389032.7_1_12:27475708-27475780:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 452.237060546875 3 451.87407 1352.60038 -0.035872 -1.621E-05 -0.068627 -3.1011E-05 -0.1045 -4.722E-05 451.873928959364 81.178 0.55663 77.339 77.192 77.749 -3.8392 20 15 2 0 0 0 0.88824 1 15474 15474 0.0059557 0 1 837850 + 31884 21189 21266 21281 31520 31520 -0.06181685378714974 NRRFQNSTNCN 11 Unmodified _NRRFQNSTNCN_ 0 0 0 REV__ENST00000389032.7_1_12:27475708-27475780:+|nuORF REV__ENST00000389032.7_1_12:27475708-27475780:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 451.87407 1352.60038 -0.25728 -0.00011626 0.49204 0.00022234 0.23476 0.00010608 451.8741935120005 81.172 0.51885 77.484 77.142 77.66 -3.6879 0.072858 0.00047088 NaN 0.0059557 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 666320 + 31885 21189 21266 21281 -0.06181685378714974 NRRRWQKTRRK 11 Unmodified _NRRRWQKTRRK_ 0 0 0 REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 793.0074462890625 2 792.974548 1583.93454 NaN NaN NaN NaN NaN NaN NaN 169.88 1 164.95 164.45 165.45 -4.9295 0 0 0 0.22632 1 33565 33565 0.00056442 0 1 + 31886 20277 21267 21282 31521 31521 0.16593235896561964 NRTATWVA 8 Unmodified _NRTATWVA_ 0 0 0 NEURL4|p.R1153W|1|0.18|ENSG00000215041|chr17:7320827-7320827|G/A|missense_variant NEURL4|p.R1153W|1|0.18|ENSG00000215041|chr17:7320827-7320827|G/A|missense_variant NEURL4|p.R1153W|1|0.18|ENSG00000215041|chr17:7320827-7320827|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2433776855469 2 459.743234 917.471915 -0.47885 -0.00022015 0.21643 9.9504E-05 -0.26241 -0.00012064 459.7435128696365 37.21 0.51745 34.741 34.5 35.017 -2.4688 24 14 2 0 0 0 8448 1 6908 6908 3.2813 3.1584 1 1155400 31887 12683 21268 21283 31522 31522 0.0098774744047887 NRVGRYKQHYY 11 Unmodified _NRVGRYKQHYY_ 0 0 0 REV__ENSG00000127951|ENST00000248598|FGL2 REV__ENSG00000127951|ENST00000248598|FGL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3848876953125 2 742.381291 1482.74803 NaN NaN NaN NaN NaN NaN NaN 143.24 1 143.24 142.74 143.74 0 0 0 0 0.22632 1 28578 28578 0.0059557 0 1 + 31888 15906 21269 21284 31523 31523 0.025965742175458217 NRVLKVLS 8 Unmodified _NRVLKVLS_ 0 0 0 REV__ENST00000491277.1_1_1:214704601-214704775:-|nuORF REV__ENST00000491277.1_1_1:214704601-214704775:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650695800781 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 126.33 1 126.33 125.83 126.83 0 0 0 0 0.23584 1 24929 24929 0.12286 0 1 + 31889 22313 21270 21285 31524 31524 0.11986056922410171 NRVSVVEYL 9 Unmodified _NRVSVVEYL_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2;TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 118.37 1 118.37 117.87 118.87 0 0 0 0 0.23508 1 23314 23314 10.8 0 1 31890 6284 21271 21286 31525 31525 0.0461712798901317 NRWFTPFVVRE 11 Unmodified _NRWFTPFVVRE_ 0 0 0 REV__CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant REV__CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 484.25799560546875 3 484.257849 1449.75172 NaN NaN NaN NaN NaN NaN NaN 157.11 1 152.32 151.82 152.82 -4.7885 0 0 0 0.22632 1 31243 31243 1.4551 1.4546 1 + 31891 13319 21272 21287 31526 31526 0.04483243991398922 NRWKMRRNQFW 11 Unmodified _NRWKMRRNQFW_ 0 0 0 REV__ENSG00000185610|ENST00000332700|DBX2 REV__ENSG00000185610|ENST00000332700|DBX2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.369384765625 2 811.417685 1620.82082 NaN NaN NaN NaN NaN NaN NaN 169.67 1 169.67 169.17 170.17 0 0 0 0 0.23698 1 34833 34833 0.30703 0 1 + 31892 18978 21273 21288 31527 31527 0.03524004739324482 NRYLWTGTA 9 Unmodified _NRYLWTGTA_ 0 0 0 REV__ALPK1|p.K1021Nfs*18|1|0.21|ENSG00000073331|chr4:112435170-112435170|A/-|frameshift_variant REV__ALPK1|p.K1021Nfs*18|1|0.21|ENSG00000073331|chr4:112435170-112435170|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.275390625 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 19.045 1 17.648 17.148 18.148 -1.3966 0 0 0 0.23508 1 3124 3124 4.3292 0.38484 1 + 31893 13014 21274 21289 31528 31528 -0.0018031184229130304 NRYTAIENELR 11 Unmodified _NRYTAIENELR_ 0 0 0 REV__ENSG00000108417|ENST00000225550|KRT37 REV__ENSG00000108417|ENST00000225550|KRT37 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2395935058594 3 460.240635 1377.70008 NaN NaN NaN NaN NaN NaN NaN 56.369 1 53.193 52.693 53.693 -3.1761 0 0 0 0.22632 1 10486 10486 1.2503 1.0783 1 + + 31894 13514 21275 21290 31529 31529 0.026334555068160626 NRYWKGEIN 9 Unmodified _NRYWKGEIN_ 0 0 0 REV__TTN|p.H2301R|1|0.39|ENSG00000155657|chr2:178774362-178774362|T/C|missense_variant REV__TTN|p.H2301R|1|0.39|ENSG00000155657|chr2:178774362-178774362|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2481079101562 2 590.298904 1178.58326 NaN NaN NaN NaN NaN NaN NaN 103 1 103 102.5 103.5 0 0 0 0 0.22962 1 20234 20234 14.838 0 1 + 31895 25500 21276 21291 31530 31530 0.0011076207774749491 NSDEERYRY 9 Unmodified _NSDEERYRY_ 0 0 0 nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1;ENST00000513008.5_1_4:54292015-54325613:+|nuORF nc|ENSG00000145216|Q6UN15-3|FIP1L1 nc|ENSG00000145216|Q6UN15-3|FIP1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.10791015625 3 411.182786 1230.52653 -0.49267 -0.00020258 0.23347 9.5998E-05 -0.2592 -0.00010658 411.1828976313752 25.753 0.55183 23.899 23.638 24.19 -1.8534 42 15 4 0 0 0 0.82357 1 4226 4226 10.8 10.102 1 4806100 31896 4597 21277 21292 31531 31531 -0.07951330269429491 NSDERDCEM 9 Unmodified _NSDERDCEM_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 366.7998352050781 3 366.799067 1097.37537 NaN NaN NaN NaN NaN NaN NaN 44.996 1 44.996 44.496 45.496 0 0 0 0 0.19622 1 8448 8448 0.96228 0 1 31897 1627 21278 21293 31532 31532 -0.1694197596395952 NSDINSNHY 9 Unmodified _NSDINSNHY_ 0 0 0 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1;AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant;AGTPBP1|p.K1079Nfs*10|1|0.38|ENSG00000135049|chr9:85579025-85579025|T/-|frameshift_variant nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2783813476562 2 532.225602 1062.43665 -0.44713 -0.00023798 0.42238 0.0002248 -0.024755 -1.3175E-05 532.2258380647248 22.896 0.92202 21.107 20.851 21.773 -1.7886 71 26 5 0 0 0 0.00011658 5 3674 3627;3672;3674;3695;3699 125.53 98.442 1 37140000 31898 3896 21279 21294 31533;31534;31535;31536;31537 31535 -0.09206959877997178 NSDINSNHY 9 Unmodified _NSDINSNHY_ 0 0 0 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1;AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant;AGTPBP1|p.K1079Nfs*10|1|0.38|ENSG00000135049|chr9:85579025-85579025|T/-|frameshift_variant nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.225602 1062.43665 0.07947 4.2296E-05 0.068777 3.6605E-05 0.14825 7.8901E-05 532.2256576086927 21.248 0.81849 21.248 20.951 21.77 0 0.070342 -0.00018632 NaN 125.53 80 23 5 NaN NaN NaN NaN 0 NaN NaN 0 68837000 31899 3896 21279 21294 -0.09206959877997178 NSDMLYSSM 9 Unmodified _NSDMLYSSM_ 0 0 0 REV__ENSG00000198353|ENST00000430889|HOXC4 REV__ENSG00000198353|ENST00000430889|HOXC4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.7953186035156 3 349.808904 1046.40488 NaN NaN NaN NaN NaN NaN NaN 39.174 1 36.732 36.232 37.232 -2.4419 0 0 0 0.19677 1 6991 6991 2.6312 2.0044 1 + 31900 19407 21280 21295 31538 31538 -0.11646411947799606 NSDQLEDQALA 11 Unmodified _NSDQLEDQALA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;ENST00000556959.1_1_14:72196918-72202208:+|nuORF nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2892456054688 2 602.278032 1202.54151 NaN NaN NaN NaN NaN NaN NaN 81.711 1 78.154 77.654 78.654 -3.557 0 0 0 0.22632 1 15963 15963 5.4027 5.1373 1 31901 7377 21281 21296 31539 31539 -0.051658831920804005 NSDQLEDQALA 11 Unmodified _NSDQLEDQALA_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;ENST00000556959.1_1_14:72196918-72202208:+|nuORF nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2782592773438 2 602.278032 1202.54151 0.39437 0.00023752 -1.5429 -0.00092923 -1.1485 -0.00069171 602.2772314219422 81.959 0.37084 78.12 77.927 78.298 -3.8392 13 10 3 0 0 0 0.60781 1 15592 15592 5.4027 5.1373 1 1397200 31902 7377 21281 21296 31540 31540 -0.051658831920804005 NSDQLLMLF 9 Unmodified _NSDQLLMLF_ 0 0 0 REV__ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant REV__ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2744750976562 2 540.773342 1079.53213 0.35277 0.00019077 3.075 0.0016629 3.4278 0.0018536 541.2757348370361 117.22 0.21049 112.73 112.63 112.84 -4.486 8 5 2 0 0 0 0.58804 1 23123 23123 13.906 0 1 1867600 + 31903 12883 21282 21297 31541 31541 -0.004453230113085738 NSDQLLMLF 9 Unmodified _NSDQLLMLF_ 0 0 0 REV__ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant REV__ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.773342 1079.53213 0.35277 0.00019077 3.075 0.0016629 3.4278 0.0018536 541.2757348370361 117.22 0.21049 112.73 112.63 112.84 -4.486 0.039453 0.0039983 NaN 13.906 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1867600 + 31904 12883 21282 21297 -0.004453230113085738 NSDQQNIVE 9 Unmodified _NSDQQNIVE_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6915283203125 2 523.741085 1045.46762 0.17868 9.3583E-05 1.2742 0.00066735 1.4529 0.00076093 523.7417353055354 121.88 0.86157 121.88 121.47 122.34 0 66 24 3 0 0 0 0.13813 1 24072 24072 45.7 3.7441 1 20955000 + 31905 19081 21283 21298 31542 31542 -0.05329806563759121 NSDQQNIVE 9 Unmodified _NSDQQNIVE_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.681396484375 2 523.741085 1045.46762 0.23251 0.00012178 1.2343 0.00064647 1.4668 0.00076824 523.7416759696927 126.55 0.96175 121.85 121.5 122.46 -4.6998 72 26 4 0 0 0 0.13813 1 24414 24414 38.176 1.6694 1 22094000 + 31906 19081 21283 21298 31543 31543 -0.05329806563759121 NSDVVEQIY 9 Unmodified _NSDVVEQIY_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2730712890625 2 533.756204 1065.49785 -0.10211 -5.45E-05 0.63357 0.00033817 0.53147 0.00028367 533.7565199453126 92.763 0.8922 92.763 92.301 93.193 0 77 25 4 0 0 0 3.7335E-10 1 18124 18124 137.42 48.52 1 50947000 31907 4610 21284 21299 31544 31544 -0.03227447898552782 NSDVVEQIY 9 Unmodified _NSDVVEQIY_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2825927734375 2 533.756204 1065.49785 0.1256 6.7041E-05 0.21332 0.00011386 0.33892 0.0001809 533.7563082257049 97.015 0.97097 92.917 92.457 93.427 -4.0978 96 27 5 0 0 0 0.0013221 1 19035 19035 126.57 48.582 1 95803000 31908 4610 21284 21299 31545 31545 -0.03227447898552782 NSDVVEQIY 9 Unmodified _NSDVVEQIY_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.282470703125 2 533.756204 1065.49785 0.49917 0.00026644 0.13806 7.3693E-05 0.63724 0.00034013 533.756274861046 97.182 1.0614 92.947 92.471 93.533 -4.2348 97 30 4 0 0 0 0.02941 1 18527 18527 114.65 36.665 1 80127000 31909 4610 21284 21299 31546 31546 -0.03227447898552782 NSDVVEQIY 9 Unmodified _NSDVVEQIY_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.282470703125 2 533.756204 1065.49785 0.016237 8.6666E-06 0.56757 0.00030294 0.5838 0.00031161 533.7564809056631 96.854 1.2799 92.934 92.398 93.678 -3.9194 115 36 5 0 0 0 0.0013221 1 18570 18570 126.57 48.582 1 88418000 31910 4610 21284 21299 31547 31547 -0.03227447898552782 NSEEREFSP 9 Unmodified _NSEEREFSP_ 0 0 0 ENST00000536413.2_1_17:12028601-12044574:+|nuORF;MAP2K4|p.L346Cfs*17|1|0.61|ENSG00000065559|chr17:12129283-12129283|T/-|frameshift_variant;ENSG00000065559|ENST00000353533|MAP2K4;nc|ENSG00000065559|P45985-2|MAP2K4 ENST00000536413.2_1_17:12028601-12044574:+|nuORF ENST00000536413.2_1_17:12028601-12044574:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7870483398438 2 547.741085 1093.46762 0.081872 4.4845E-05 -0.34666 -0.00018988 -0.26479 -0.00014504 547.7407490168329 82.122 1.1688 78.249 77.61 78.779 -3.8736 92 33 4 0 0 0 0.6329 1 15664 15664 10.824 0 1 11727000 31911 1358 21285 21300 31548 31548 -0.07537806563755112 NSEKGGQPY 9 Unmodified _NSEKGGQPY_ 0 0 0 REV__nc|ENSG00000156970|O60566-2|BUB1B REV__nc|ENSG00000156970|O60566-2|BUB1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2557678222656 2 490.227613 978.440674 NaN NaN NaN NaN NaN NaN NaN 39.765 1 37.36 36.86 37.86 -2.4049 0 0 0 0.23277 1 7100 7100 13.906 0.39817 1 + 31912 17276 21286 21301 31549 31549 -0.049408703842800605 NSELPTAKEY 10 Unmodified _NSELPTAKEY_ 0 0 0 ENSG00000187555|ENST00000344836|USP7;nc|ENSG00000187555|Q93009-3|USP7;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;ENST00000569448.1_1_16:8993400-8995074:-|nuORF ENSG00000187555|ENST00000344836|USP7 ENSG00000187555|ENST00000344836|USP7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.336181640625 2 576.282586 1150.55062 -0.10928 -6.2975E-05 0.94103 0.0005423 0.83176 0.00047933 576.2828135533385 57.294 0.52417 54.399 54.166 54.69 -2.8944 18 14 2 0 0 0 0.36078 2 10955 10955;10975 33.445 18.24 1 1803700 31913 7114 21287 21302 31550;31551 31550 -0.0186348983577318 NSEPETLEY 9 Unmodified _NSEPETLEY_ 0 0 0 nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD;ENST00000490764.5_1_2:234327938-234366271:+|nuORF;DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant nc|ENSG00000077044|Q16760-2|DGKD nc|ENSG00000077044|Q16760-2|DGKD MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2748413085938 2 541.237844 1080.46113 0.10602 5.738E-05 0.25589 0.00013849 0.3619 0.00019587 541.2379544211036 70.337 1.1935 70.337 69.777 70.97 0 98 33 4 0 0 0 0.08273 1 13597 13597 75.761 2.7929 1 34083000 31914 1549 21288 21303 31552 31552 -0.07587744515149097 NSEPETLEY 9 Unmodified _NSEPETLEY_ 0 0 0 nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD;ENST00000490764.5_1_2:234327938-234366271:+|nuORF;DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant nc|ENSG00000077044|Q16760-2|DGKD nc|ENSG00000077044|Q16760-2|DGKD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2642822265625 2 541.237844 1080.46113 0.12176 6.5902E-05 -0.01634 -8.8441E-06 0.10542 5.7058E-05 541.237772034767 73.999 1.4047 70.635 70.046 71.45 -3.3643 117 39 4 0 0 0 9.0984E-06 3 14429 14368;14429;14430 92.653 62.161 1 35122000 31915 1549 21288 21303 31553;31554;31555 31554 -0.07587744515149097 NSEPETLEY 9 Unmodified _NSEPETLEY_ 0 0 0 nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD;ENST00000490764.5_1_2:234327938-234366271:+|nuORF;DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant nc|ENSG00000077044|Q16760-2|DGKD nc|ENSG00000077044|Q16760-2|DGKD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2827758789062 2 541.237844 1080.46113 0.25106 0.00013589 -0.084491 -4.5729E-05 0.16657 9.0156E-05 541.2377268419363 74.246 1.4885 70.57 70.033 71.522 -3.6764 107 42 4 0 0 0 0.061113 2 14004 14004;14126 82.529 35.608 1 27142000 31916 1549 21288 21303 31556;31557 31556 -0.07587744515149097 NSEPETLEY 9 Unmodified _NSEPETLEY_ 0 0 0 nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD;ENST00000490764.5_1_2:234327938-234366271:+|nuORF;DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant nc|ENSG00000077044|Q16760-2|DGKD nc|ENSG00000077044|Q16760-2|DGKD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26416015625 2 541.237844 1080.46113 0.44927 0.00024316 -0.19934 -0.00010789 0.24993 0.00013527 541.2376985584382 74.113 1.4273 70.519 70.014 71.441 -3.594 115 40 4 0 0 0 4.3991E-06 3 14104 14054;14104;14154 83.429 66.073 1 29962000 31917 1549 21288 21303 31558;31559;31560 31559 -0.07587744515149097 NSEQNHDDY 9 Unmodified _NSEQNHDDY_ 0 0 0 ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.20574951171875 3 374.475858 1120.40575 -0.21468 -8.0392E-05 0.17178 6.4326E-05 -0.042902 -1.6066E-05 374.47591068789427 101.24 0.77155 97.078 96.766 97.538 -4.1594 43 21 3 0 0 0 0.78802 1 19912 19912 2.2828 0.63015 1 1948500 31918 4121 21289 21304 31561 31561 -0.1496415798289945 NSEQNHDDY 9 Unmodified _NSEQNHDDY_ 0 0 0 ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2171630859375 3 374.475858 1120.40575 0.32021 0.00011991 -0.18901 -7.078E-05 0.1312 4.913E-05 374.4757240008099 101.46 0.65147 97.143 96.82 97.471 -4.3208 39 18 3 0 0 0 0.73814 1 19407 19407 4.5289 1.7937 1 2472700 31919 4121 21289 21304 31562 31562 -0.1496415798289945 NSEQNHDDY 9 Unmodified _NSEQNHDDY_ 0 0 0 ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.475858 1120.40575 -0.21468 -8.0392E-05 0.17178 6.4326E-05 -0.042902 -1.6066E-05 374.47591068789427 101.24 0.77155 97.078 96.766 97.538 -4.1594 -0.0032385 0.00013827 NaN 4.5289 43 21 3 NaN NaN NaN NaN 0 NaN NaN 0 1948500 31920 4121 21289 21304 -0.1496415798289945 NSEQNHDDY 9 Unmodified _NSEQNHDDY_ 0 0 0 ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 374.475858 1120.40575 -0.29764 -0.00011146 0.2538 9.5042E-05 -0.043842 -1.6418E-05 374.47596177517966 101.01 0.56409 97.022 96.892 97.456 -3.9895 -0.058842 0.00023042 NaN 4.5289 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1575300 31921 4121 21289 21304 -0.1496415798289945 NSERCRCTLY 10 Unmodified _NSERCRCTLY_ 0 0 0 ENSG00000144451|ENST00000331683|SPAG16;ENST00000452556.5_1_2:214162070-215102915:+|nuORF;nc|ENSG00000144451|Q8N0X2-2|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7803955078125 2 622.779164 1243.54378 0.83815 0.00052198 0.38252 0.00023822 1.2207 0.0007602 622.7794845441907 79.175 0.59048 79.175 78.854 79.444 0 26 16 2 0 0 0 0.42569 1 15445 15445 29.082 2.8134 1 2513900 31922 4554 21290 21305 31563 31563 -0.06825449259622474 NSERITVKKE 10 Unmodified _NSERITVKKE_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2730102539062 2 602.338227 1202.6619 NaN NaN NaN NaN NaN NaN NaN 81.49 1 77.933 77.433 78.433 -3.557 0 0 0 0.22588 1 15914 15914 5.7319 0 1 31923 1150 21291 21306 31564 31564 0.06867569592191103 NSEYPAERK 9 Unmodified _NSEYPAERK_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT;XPOT|p.L602_I603insR|1|0.03|ENSG00000184575|chr12:64430116-64430117|-/TAG|inframe_insertion ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7926635742188 2 547.26727 1092.51999 0.51663 0.00028273 0.03314 1.8136E-05 0.54977 0.00030087 547.2672384062918 41.242 0.80391 41.242 40.885 41.689 0 57 22 3 0 0 0 0.60061 1 7642 7642 13.042 2.2185 1 4044700 31924 6921 21292 21307 31565 31565 -0.022572234301378558 NSFDKIKVQ 9 Unmodified _NSFDKIKVQ_ 0 0 0 REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 88.15 1 88.15 87.65 88.65 0 0 0 0 0.23508 1 17202 17202 10.8 3.6978 1 + 31925 25355 21293 21308 31566 31566 0.0461712798901317 NSFDKIKVQ 9 Unmodified _NSFDKIKVQ_ 0 0 0 REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 88.361 1 88.361 87.861 88.861 0 0 0 0 0.2032 1 17246 17246 22.658 7.4096 1 + 31926 25355 21293 21308 31567 31567 0.0461712798901317 NSFDKIKVQ 9 Unmodified _NSFDKIKVQ_ 0 0 0 REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 92.106 1 88.011 87.511 88.511 -4.0946 0 0 0 0.2032 1 17546 17546 22.658 2.2436 1 + 31927 25355 21293 21308 31568 31568 0.0461712798901317 NSFMNVHL 8 Unmodified _NSFMNVHL_ 0 0 0 ENSG00000181555|ENST00000409792|SETD2;SETD2|p.R1407Gfs*5|1|0.18|ENSG00000181555|chr3:47120417-47120417|T/-|frameshift_variant;SETD2|p.N1396Mfs*16|1|0.42|ENSG00000181555|chr3:47120449-47120449|T/-|frameshift_variant;nc|ENSG00000181555|Q9BYW2-3|SETD2;SETD2|p.T1652Yfs*14|1|0.26|ENSG00000181555|chr3:47101519-47101520|-/A|frameshift_variant;nc|ENSG00000181555|Q9BYW2-2|SETD2 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23187255859375 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 7.147 1 6.4679 5.9679 6.9679 -0.67913 0 0 0 0.21486 1 619 619 0.79363 0 1 31928 6728 21294 21309 31569 31569 -0.03307014668496322 NSGERYKID 9 Unmodified _NSGERYKID_ 0 0 0 ENST00000375664.8_2_10:28908559-28908709:+|nuORF ENST00000375664.8_2_10:28908559-28908709:+|nuORF ENST00000375664.8_2_10:28908559-28908709:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2688598632812 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 95.068 1 91.187 90.687 91.687 -3.881 0 0 0 0.18489 1 18240 18240 17.113 2.7075 1 31929 9237 21295 21310 31570 31570 -0.017052234301445424 NSGPGSGSG 9 Unmodified _NSGPGSGSG_ 0 0 0 REV__NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant REV__NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.1509094238281 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 25.743 1 23.889 23.389 24.389 -1.8534 0 0 0 0.19628 1 4243 4243 0.073264 0.029476 1 + 31930 19682 21296 21311 31571 31571 -0.08221646061031151 NSGTGPTGAAS 11 Unmodified _NSGTGPTGAAS_ 0 0 0 ENST00000583201.5_1_17:62499633-62499690:-|nuORF;ENST00000540698.6_1_17:62499633-62499921:-|nuORF ENST00000583201.5_1_17:62499633-62499690:-|nuORF ENST00000583201.5_1_17:62499633-62499690:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23089599609375 2 460.209421 918.404288 NaN NaN NaN NaN NaN NaN NaN 93.857 1 89.713 89.213 90.213 -4.1435 0 0 0 0.20951 1 17895 17895 16.566 0.41677 1 31931 11074 21297 21312 31572 31572 -0.05817747280991625 NSGTQILFY 9 Unmodified _NSGTQILFY_ 0 0 0 ENST00000503862.5_3_4:108746377-108829880:+|nuORF ENST00000503862.5_3_4:108746377-108829880:+|nuORF ENST00000503862.5_3_4:108746377-108829880:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2659301757812 2 521.763832 1041.51311 -0.39362 -0.00020538 1.7345 0.00090499 1.3409 0.00069961 522.2663073816833 87.553 0.49339 83.557 83.34 83.833 -3.9953 25 13 3 0 0 0 0.45972 1 16698 16698 8.1555 8.0823 1 2743700 31932 10649 21298 21313 31573 31573 -0.00598536310712916 NSHTYPTTGQV 11 Unmodified _NSHTYPTTGQV_ 0 0 0 REV__nc|ENSG00000172869|Q9Y485|DMXL1 REV__nc|ENSG00000172869|Q9Y485|DMXL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2965087890625 2 602.783284 1203.55202 NaN NaN NaN NaN NaN NaN NaN 34.493 1 32.277 31.777 32.777 -2.2158 0 0 0 0.22842 1 6045 6045 9.544 0.9507 1 + 31933 13701 21299 21314 31574 31574 -0.04161855747020127 NSHWDIED 8 Unmodified _NSHWDIED_ 0 0 0 CD163|p.Y843Tfs*38|1|0.36|ENSG00000177575|chr12:7485348-7485348|A/-|frameshift_variant;ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7-4|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF CD163|p.Y843Tfs*38|1|0.36|ENSG00000177575|chr12:7485348-7485348|A/-|frameshift_variant CD163|p.Y843Tfs*38|1|0.36|ENSG00000177575|chr12:7485348-7485348|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.1023864746094 3 339.142039 1014.40429 NaN NaN NaN NaN NaN NaN NaN 100.84 1 96.677 96.177 97.177 -4.1594 0 0 0 0.21486 1 19822 19822 1.3295 0.13619 1 31934 439 21300 21315 31575 31575 -0.10233747280994976 NSHYDVKSP 9 Unmodified _NSHYDVKSP_ 0 0 0 FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant;ENSG00000073910|ENST00000542859|FRY;FRY|p.L1623Wfs*22|1|0.44|ENSG00000073910|chr13:32224331-32224331|C/-|frameshift_variant;FRY|p.T871Hfs*25|1|0.22|ENSG00000073910|chr13:32178361-32178362|-/C|frameshift_variant FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6829223632812 2 523.748713 1045.48287 -0.22793 -0.00011938 -1.9884 -0.0010414 -2.2164 -0.0011608 524.2486296161844 101.11 0.2095 96.816 96.702 96.912 -4.297 6 5 2 0 0 0 0.66788 1 19347 19347 17.113 6.9623 1 2019200 31935 1489 21301 21316 31576 31576 -0.038048949759058814 NSIIINKYL 9 Unmodified _NSIIINKYL_ 0 0 0 REV__tr|U7SS02|U7SS02_FUSNUThioredoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01493PE=4SV=1 REV__tr|U7SS02|U7SS02_FUSNUThioredoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01493PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21600341796875 3 359.881608 1076.623 -0.43551 -0.00015673 0.55514 0.00019979 0.11964 4.3056E-05 359.88174394748637 91.753 0.66402 91.753 91.462 92.126 0 42 18 3 0 0 0 0.68708 1 17909 17909 7.1017 0 1 4141300 + 31936 25043 21302 21317 31577 31577 0.08774889028472899 NSIQEYIRQL 10 Unmodified _NSIQEYIRQL_ 0 0 0 ENST00000447781.2_1_1:153352465-153352621:-|nuORF;ENSG00000104341|ENST00000521545|LAPTM4B;nc|ENSG00000104341|Q86VI4|LAPTM4B ENST00000447781.2_1_1:153352465-153352621:-|nuORF ENST00000447781.2_1_1:153352465-153352621:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 631.879150390625 2 632.338227 1262.6619 NaN NaN NaN NaN NaN NaN NaN 166.63 1 166.63 166.13 167.13 0 0 0 0 2.8426 1 33963 33963 0.84494 0 1 31937 2230 21303 21318 31578 31578 0.04107569592179061 NSLDFLDEEY 10 Unmodified _NSLDFLDEEY_ 0 0 0 nc|ENSG00000186642|O00408-5|PDE2A;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A nc|ENSG00000186642|O00408-5|PDE2A nc|ENSG00000186642|O00408-5|PDE2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7719116210938 2 622.769508 1243.52446 NaN NaN NaN NaN NaN NaN NaN 40.215 1 37.726 37.226 38.226 -2.4896 0 0 0 0.22588 1 7191 7191 10.074 3.3508 1 31938 7072 21304 21319 31579 31579 -0.08755803797885164 NSLEELIY 8 Unmodified _NSLEELIY_ 0 0 0 SYNE1|p.S1250Y|1|0.25|ENSG00000131018|chr6:152444499-152444499|G/T|missense_variant SYNE1|p.S1250Y|1|0.25|ENSG00000131018|chr6:152444499-152444499|G/T|missense_variant SYNE1|p.S1250Y|1|0.25|ENSG00000131018|chr6:152444499-152444499|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2560729980469 2 490.75039 979.486227 0.18168 8.9158E-05 -0.14615 -7.1721E-05 0.035532 1.7437E-05 490.75026329416227 119.15 0.83348 119.15 118.78 119.62 0 68 23 4 0 0 0 0.34864 1 23508 23508 39.957 0 1 14197000 31939 25807 21305 21320 31580 31580 -0.0043364492189539305 NSLEELIY 8 Unmodified _NSLEELIY_ 0 0 0 SYNE1|p.S1250Y|1|0.25|ENSG00000131018|chr6:152444499-152444499|G/T|missense_variant SYNE1|p.S1250Y|1|0.25|ENSG00000131018|chr6:152444499-152444499|G/T|missense_variant SYNE1|p.S1250Y|1|0.25|ENSG00000131018|chr6:152444499-152444499|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26434326171875 2 490.75039 979.486227 0.025903 1.2712E-05 0.24563 0.00012054 0.27153 0.00013325 490.7503815936289 123.97 1.0232 119.38 118.93 119.95 -4.5926 82 28 4 0 0 0 0.34864 1 23867 23867 48.346 0 1 16414000 31940 25807 21305 21320 31581 31581 -0.0043364492189539305 NSLGKADPN 9 Unmodified _NSLGKADPN_ 0 0 0 REV__ENSG00000143171|ENST00000359842|RXRG REV__ENSG00000143171|ENST00000359842|RXRG MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2315979003906 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 139.69 1 134.74 134.24 135.24 -4.952 0 0 0 0.19665 1 26872 26872 1.2148 1.092 1 + 31941 16703 21306 21321 31582 31582 -0.014885665216752386 NSLHGRQW 8 Unmodified _NSLHGRQW_ 0 0 0 REV__ENST00000519858.1_1_8:59513803-59535956:-|nuORF REV__ENST00000519858.1_1_8:59513803-59535956:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.1688232421875 3 333.170264 996.488962 NaN NaN NaN NaN NaN NaN NaN 70.698 1 70.698 70.198 71.198 0 0 0 0 0.21486 1 13694 13694 3.2813 0.78282 1 + 31942 14028 21307 21322 31583 31583 -0.009423319537177122 NSLPEYPKF 9 Unmodified _NSLPEYPKF_ 0 0 0 SLITRK5|p.H899Ifs*27|1|0.27|ENSG00000165300|chr13:87678079-87678079|C/-|frameshift_variant;nc|ENSG00000165300|O94991-2|SLITRK5;SLITRK5|p.A906Qfs*20|1|0.09|ENSG00000165300|chr13:87678100-87678100|G/-|frameshift_variant;ENSG00000165300|ENST00000683689|SLITRK5 SLITRK5|p.H899Ifs*27|1|0.27|ENSG00000165300|chr13:87678079-87678079|C/-|frameshift_variant SLITRK5|p.H899Ifs*27|1|0.27|ENSG00000165300|chr13:87678079-87678079|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7765502929688 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 53.209 1 50.114 49.614 50.614 -3.0954 0 0 0 0.21469 1 9835 9835 19.257 0.88389 1 31943 25695 21308 21323 31584 31584 0.0013803672338781325 NSLPEYPKF 9 Unmodified _NSLPEYPKF_ 0 0 0 SLITRK5|p.H899Ifs*27|1|0.27|ENSG00000165300|chr13:87678079-87678079|C/-|frameshift_variant;nc|ENSG00000165300|O94991-2|SLITRK5;SLITRK5|p.A906Qfs*20|1|0.09|ENSG00000165300|chr13:87678100-87678100|G/-|frameshift_variant;ENSG00000165300|ENST00000683689|SLITRK5 SLITRK5|p.H899Ifs*27|1|0.27|ENSG00000165300|chr13:87678079-87678079|C/-|frameshift_variant SLITRK5|p.H899Ifs*27|1|0.27|ENSG00000165300|chr13:87678079-87678079|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7762451171875 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 53.434 1 50.338 49.838 50.838 -3.0954 0 0 0 0.23508 1 9873 9873 9.3831 0 1 31944 25695 21308 21323 31585 31585 0.0013803672338781325 NSLVAGGGISS 11 Unmodified _NSLVAGGGISS_ 0 0 0 REV__ENST00000380773.8_2_6:2785591-2785759:+|nuORF REV__ENST00000380773.8_2_6:2785591-2785759:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24957275390625 2 481.251089 960.487624 0.04405 2.1199E-05 -2.0114 -0.00096798 -1.9673 -0.00094678 481.2500217451735 36.651 0.63965 36.651 36.248 36.887 0 28 17 2 0 0 0 0.61288 1 6721 6721 17.443 2.6044 1 3615800 + 31945 21159 21309 21324 31586 31586 0.0057998916687438395 NSNKLKEF 8 Unmodified _NSNKLKEF_ 0 0 0 REV__ENSG00000073711|ENST00000264977|PPP2R3A REV__ENSG00000073711|ENST00000264977|PPP2R3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2646179199219 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 78.272 1 74.808 74.308 75.308 -3.4633 0 0 0 0.2325 1 15284 15284 2.643 2.2634 1 + 31946 14303 21310 21325 31587 31587 0.02332883409144415 NSNQSDLGDP 10 Unmodified _NSNQSDLGDP_ 0 0 0 REV__PTPRH|p.N460Kfs*60|1|0.11|ENSG00000080031|chr19:55200276-55200277|-/T|frameshift_variant REV__PTPRH|p.N460Kfs*60|1|0.11|ENSG00000080031|chr19:55200276-55200277|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7010498046875 2 523.722892 1045.43123 NaN NaN NaN NaN NaN NaN NaN 161.24 1 156.01 155.51 156.51 -5.2299 0 0 0 0.22588 1 31315 31315 8.7454 0.15213 1 + 31947 14405 21311 21326 31588 31588 -0.08966683460494096 NSNSFSPLN 9 Unmodified _NSNSFSPLN_ 0 0 0 L1MB4_dup8349|chr19:41722393-41722883:-|1.915539018183746|0.0855613051879158|4.48|472.0|20|1|anti-sense L1MB4_dup8349|chr19:41722393-41722883:-|1.915539018183746|0.0855613051879158|4.48|472.0|20|1|anti-sense L1MB4_dup8349|chr19:41722393-41722883:-|1.915539018183746|0.0855613051879158|4.48|472.0|20|1|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2662353515625 2 490.227613 978.440674 0.13496 6.6161E-05 -0.30771 -0.00015085 -0.17275 -8.4688E-05 490.2274684173461 50.727 3.2905 47.682 46.266 49.556 -3.0453 144 94 2 0 0 0 0.35556 1 9417 9417 12.241 12.241 1 4439400 31948 12022 21312 21327 31589 31589 -0.049408703842800605 NSPUEUKKAQ 10 Unmodified _NSPUEUKKAQ_ 0 0 0 REV__ENSG00000250722|ENST00000514985|SELENOP REV__ENSG00000250722|ENST00000514985|SELENOP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2807006835938 2 602.194159 1202.37377 NaN NaN NaN NaN NaN NaN NaN 68.783 1 65.247 64.747 65.747 -3.5362 0 0 0 2.8426 1 12937 12937 0 0 0 + 31949 19829 21313 21328 31590 31590 -0.21932593056067162 NSPVEGSAPV 10 Unmodified _NSPVEGSAPV_ 0 0 0 REV__ENST00000445422.5_1_22:24408011-24408092:+|nuORF REV__ENST00000445422.5_1_22:24408011-24408092:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73748779296875 2 478.737814 955.461075 0.28663 0.00013722 0.43293 0.00020726 0.71956 0.00034448 478.7379832506029 36.046 0.42504 33.769 33.525 33.95 -2.2766 18 11 2 0 0 0 0.40256 1 6323 6323 30.637 0 1 661020 + 31950 21748 21314 21329 31591 31591 -0.018436997244634767 NSPVEGSAPV 10 Unmodified _NSPVEGSAPV_ 0 0 0 REV__ENST00000445422.5_1_22:24408011-24408092:+|nuORF REV__ENST00000445422.5_1_22:24408011-24408092:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.737814 955.461075 0.28663 0.00013722 0.43293 0.00020726 0.71956 0.00034448 478.7379832506029 36.046 0.42504 33.769 33.525 33.95 -2.2766 -0.013204 -3.4803E-05 NaN 30.637 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 661020 + 31951 21748 21314 21329 -0.018436997244634767 NSPYIRDC 8 Unmodified _NSPYIRDC_ 0 0 0 ZNF30|p.K146Nfs*97|1|0.16|ENSG00000168661|chr19:34943400-34943400|A/-|frameshift_variant ZNF30|p.K146Nfs*97|1|0.16|ENSG00000168661|chr19:34943400-34943400|A/-|frameshift_variant ZNF30|p.K146Nfs*97|1|0.16|ENSG00000168661|chr19:34943400-34943400|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.13238525390625 3 323.148248 966.422915 NaN NaN NaN NaN NaN NaN NaN 119.12 1 114.71 114.21 115.21 -4.4088 0 0 0 0.21486 1 22925 22925 0.45834 0 1 31952 26613 21315 21330 31592 31592 -0.061639089107984546 NSQILVNEK 9 Unmodified _NSQILVNEK_ 0 0 0 REV__tr|U7SIZ5|U7SIZ5_FUSNUPeptidaseM20dimerisationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02040PE=4SV=1 REV__tr|U7SIZ5|U7SIZ5_FUSNUPeptidaseM20dimerisationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02040PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.271728515625 2 522.787838 1043.56112 -0.024423 -1.2768E-05 0.31141 0.0001628 0.28699 0.00015003 522.7879629050855 57.184 0.49313 57.184 56.85 57.343 0 23 13 2 0 0 0 0.51337 1 10951 10951 1.2148 0 1 2982200 + 31953 24900 21316 21331 31593 31593 0.04108537609317864 NSQLGTQPA 9 Unmodified _NSQLGTQPA_ 0 0 0 REV__ENSG00000103047|ENST00000261778|TANGO6 REV__ENSG00000103047|ENST00000261778|TANGO6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2306823730469 2 458.230156 914.445759 0.30863 0.00014142 0.016522 7.5709E-06 0.32515 0.00014899 458.2301580760358 27.92 0.48119 27.92 27.631 28.113 0 30 13 3 0 0 0 0.42842 1 4906 4906 0.40827 0 1 3567100 + 31954 14862 21317 21332 31594 31594 -0.014885665216752386 NSSDHVLLY 9 Unmodified _NSSDHVLLY_ 0 0 0 ENST00000369244.6_1_6:99374760-99382655:-|nuORF;ENST00000229971.2_1_6:99374760-99395723:-|nuORF ENST00000369244.6_1_6:99374760-99382655:-|nuORF ENST00000369244.6_1_6:99374760-99382655:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6959228515625 2 524.258914 1046.50327 -0.25125 -0.00013172 0.48652 0.00025506 0.23527 0.00012334 524.2591143026863 89.075 0.98517 85.283 84.734 85.719 -3.7926 84 27 5 0 0 0 0.075749 1 17413 17413 78.728 26.46 1 15099000 31955 8156 21318 21333 31595 31595 -0.018117243160759244 NSSDHVLLY 9 Unmodified _NSSDHVLLY_ 0 0 0 ENST00000369244.6_1_6:99374760-99382655:-|nuORF;ENST00000229971.2_1_6:99374760-99395723:-|nuORF ENST00000369244.6_1_6:99374760-99382655:-|nuORF ENST00000369244.6_1_6:99374760-99382655:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6890869140625 2 524.258914 1046.50327 -0.09137 -4.7901E-05 0.20384 0.00010686 0.11247 5.8963E-05 524.2590094950906 89.323 1.0559 85.279 84.754 85.81 -4.0443 72 29 3 0 0 0 0.028245 1 17027 17027 99.799 47.531 1 14003000 31956 8156 21318 21333 31596 31596 -0.018117243160759244 NSSDHVLLY 9 Unmodified _NSSDHVLLY_ 0 0 0 ENST00000369244.6_1_6:99374760-99382655:-|nuORF;ENST00000229971.2_1_6:99374760-99395723:-|nuORF ENST00000369244.6_1_6:99374760-99382655:-|nuORF ENST00000369244.6_1_6:99374760-99382655:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6964721679688 2 524.258914 1046.50327 0.25881 0.00013568 -0.1657 -8.687E-05 0.093109 4.8813E-05 524.258757425906 88.995 1.057 85.245 84.709 85.766 -3.7501 85 29 5 0 0 0 0.036636 1 17017 17017 88.954 36.686 1 14137000 31957 8156 21318 21333 31597 31597 -0.018117243160759244 NSSELDEEY 9 Unmodified _NSSELDEEY_ 0 0 0 TTC1|p.N103Tfs*17|1|0.08|ENSG00000113312|chr5:160010830-160010830|A/-|frameshift_variant;ENSG00000113312|ENST00000231238|TTC1 TTC1|p.N103Tfs*17|1|0.08|ENSG00000113312|chr5:160010830-160010830|A/-|frameshift_variant TTC1|p.N103Tfs*17|1|0.08|ENSG00000113312|chr5:160010830-160010830|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.777099609375 2 543.217108 1084.41966 0.32669 0.00017747 -0.80611 -0.00043789 -0.47942 -0.00026043 543.2164069216383 21.257 0.30351 21.257 21.124 21.427 0 15 8 2 0 0 0 0.5059 1 3546 3546 19.257 2.1441 1 899180 31958 2735 21319 21334 31598 31598 -0.11916925274454115 NSSPSGWNPV 10 Unmodified _NSSPSGWNPV_ 0 0 0 ENST00000379904.8_1_5:96245401-96245467:+|nuORF ENST00000379904.8_1_5:96245401-96245467:+|nuORF ENST00000379904.8_1_5:96245401-96245467:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6881103515625 2 522.740888 1043.46722 0.46505 0.0002431 -0.78019 -0.00040784 -0.31514 -0.00016474 522.7404606499704 33.21 0.75321 30.995 30.739 31.492 -2.2158 46 20 3 0 0 0 0.72988 1 5854 5854 8.1555 0.24537 1 3601700 31959 9307 21320 21335 31599 31599 -0.0527718149296561 NSSVANTLLY 10 Unmodified _NSSVANTLLY_ 0 0 0 REV__nc|ENSG00000071794|Q14527-2|HLTF REV__nc|ENSG00000071794|Q14527-2|HLTF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2835083007812 2 541.279846 1080.54514 0.073492 3.9779E-05 -0.038554 -2.0869E-05 0.034937 1.8911E-05 541.2798297701883 71.746 0.95147 68.497 67.994 68.945 -3.2492 67 26 4 0 0 0 0.15224 1 13899 13899 47.749 1.7277 1 13991000 + 31960 14275 21321 21336 31600 31600 0.008088313724556428 NSSVLRLK 8 Unmodified _NSSVLRLK_ 0 0 0 REV__ENST00000572977.5_2_17:80900162-80901834:-|nuORF REV__ENST00000572977.5_2_17:80900162-80901834:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 306.19073486328125 3 306.190665 915.550165 NaN NaN NaN NaN NaN NaN NaN 27.892 1 25.936 25.436 26.436 -1.9561 0 0 0 0.23899 1 4972 4972 1.3295 0 1 + 31961 23180 21322 21337 31601 31601 0.08901180025702615 NSTGYRTGPE 10 Unmodified _NSTGYRTGPE_ 0 0 0 ENST00000478766.1_1_20:46335609-46365681:-|nuORF ENST00000478766.1_1_20:46335609-46365681:-|nuORF ENST00000478766.1_1_20:46335609-46365681:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2606811523438 2 541.249077 1080.4836 0.39765 0.00021523 0.1793 9.7048E-05 0.57695 0.00031227 541.2491318504059 35.502 0.48987 33.225 33 33.49 -2.2766 21 13 2 0 0 0 0.42569 1 6275 6275 29.082 5.061 1 1738200 31962 10327 21323 21338 31602 31602 -0.0534210032685678 NSTGYRTGPE 10 Unmodified _NSTGYRTGPE_ 0 0 0 ENST00000478766.1_1_20:46335609-46365681:-|nuORF ENST00000478766.1_1_20:46335609-46365681:-|nuORF ENST00000478766.1_1_20:46335609-46365681:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.249077 1080.4836 -0.12917 -6.9915E-05 0.78123 0.00042284 0.65206 0.00035292 541.249483675443 35.613 0.60452 33.219 32.915 33.52 -2.3938 -0.017151 0.00036857 NaN 29.082 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2541500 31963 10327 21323 21338 -0.0534210032685678 NSTSHTWP 8 Unmodified _NSTSHTWP_ 0 0 0 ENST00000492336.5_1_21:37692562-37711220:+|nuORF;ENSG00000159256|ENST00000400485|MORC3 ENST00000492336.5_1_21:37692562-37711220:+|nuORF ENST00000492336.5_1_21:37692562-37711220:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2507629394531 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 76.035 1 72.62 72.12 73.12 -3.4151 0 0 0 0.2074 1 14837 14837 19.439 0 1 31964 5197 21324 21339 31603 31603 -0.0631712221018006 NSTWCLPAS 9 Unmodified _NSTWCLPAS_ 0 0 0 REV__RNF145|p.L85Ffs*20|1|0.22|ENSG00000145860|chr5:159194754-159194755|-/A|frameshift_variant REV__RNF145|p.L85Ffs*20|1|0.22|ENSG00000145860|chr5:159194754-159194755|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2632751464844 2 489.72111 977.427666 0.06091 2.9829E-05 -0.40989 -0.00020073 -0.34898 -0.0001709 489.72107946504775 75.456 1.1051 72.041 71.574 72.679 -3.4151 112 31 5 0 0 0 0.54076 1 14769 14769 34.102 17.16 1 65414000 + 31965 24568 21325 21340 31604 31604 -0.0619502476802154 NSVVTQHEPA 10 Unmodified _NSVVTQHEPA_ 0 0 0 nc|ENSG00000136108|Q8WWK9-4|CKAP2;CKAP2|p.T579Pfs*11|1|0.07|ENSG00000136108|chr13:52474011-52474011|A/-|frameshift_variant;CKAP2|p.K606Rfs*14|3|0.38|ENSG00000136108|chr13:52474899-52474899|A/-|frameshift_variant;nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2 nc|ENSG00000136108|Q8WWK9-4|CKAP2 nc|ENSG00000136108|Q8WWK9-4|CKAP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26513671875 2 541.26727 1080.51999 0.21854 0.00011829 -1.1167 -0.00060444 -0.89818 -0.00048615 541.2654463695 93.656 1.0031 89.665 89.243 90.246 -3.9907 100 28 5 0 0 0 0.6817 1 18413 18413 13.042 0.80181 1 31712000 31966 564 21326 21341 31605 31605 -0.017052234301445424 NSYNELMVDWY 11 Unmodified _NSYNELMVDWY_ 0 0 0 REV__ZNF331|p.N61Tfs*5|1|0.13|ENSG00000130844|chr19:53576736-53576736|A/-|frameshift_variant REV__ZNF331|p.N61Tfs*5|1|0.13|ENSG00000130844|chr19:53576736-53576736|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7311096191406 3 478.539582 1432.59692 NaN NaN NaN NaN NaN NaN NaN 103.39 1 99.042 98.542 99.542 -4.346 0 0 0 0.22632 1 19801 19801 0.094841 0 1 + 31967 16037 21327 21342 31606 31606 -0.10207792995947784 NSYYSQQGV 9 Unmodified _NSYYSQQGV_ 0 0 0 ENST00000484541.5_1_10:127478031-127484749:-|nuORF;ENST00000465577.5_1_10:127477439-127486658:-|nuORF;UROS|p.F196Lfs*44|2|0.43|ENSG00000188690|chr10:125794952-125794952|A/-|frameshift_variant;ENSG00000188690|ENST00000368797|UROS ENST00000484541.5_1_10:127478031-127484749:-|nuORF ENST00000484541.5_1_10:127478031-127484749:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6876220703125 2 523.232896 1044.45124 -0.16854 -8.8188E-05 -0.25635 -0.00013413 -0.42489 -0.00022232 523.2331567865302 100.94 1.4966 96.778 95.975 97.471 -4.1594 90 42 3 0 0 0 0.39189 1 19821 19821 26.268 2.2476 1 9221800 31968 7189 21328 21343 31607 31607 -0.06920887729847891 NSYYSQQGV 9 Unmodified _NSYYSQQGV_ 0 0 0 ENST00000484541.5_1_10:127478031-127484749:-|nuORF;ENST00000465577.5_1_10:127477439-127486658:-|nuORF;UROS|p.F196Lfs*44|2|0.43|ENSG00000188690|chr10:125794952-125794952|A/-|frameshift_variant;ENSG00000188690|ENST00000368797|UROS ENST00000484541.5_1_10:127478031-127484749:-|nuORF ENST00000484541.5_1_10:127478031-127484749:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.232896 1044.45124 -0.16854 -8.8188E-05 -0.25635 -0.00013413 -0.42489 -0.00022232 523.2331567865302 100.94 1.4966 96.778 95.975 97.471 -4.1594 0.002232 0.00041301 NaN 26.268 90 42 3 NaN NaN NaN NaN 0 NaN NaN 0 9221800 31969 7189 21328 21343 -0.06920887729847891 NTAPEIWV 8 Unmodified _NTAPEIWV_ 0 0 0 sp|P16847|UL28_HCMVAUncharacterizedproteinUL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL28PE=3SV=1;sp|Q6SWA3|UL298_HCMVMProteinUL29/28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL29PE=3SV=2;sp|C0H677|UL298_HCMVAProteinUL29/UL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=1SV=1 sp|P16847|UL28_HCMVAUncharacterizedproteinUL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL28PE=3SV=1 sp|P16847|UL28_HCMVAUncharacterizedproteinUL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL28PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2413635253906 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 63.443 1 60.027 59.527 60.527 -3.4158 0 0 0 0.22847 1 11852 11852 10.074 9.7669 1 31970 25712 21329 21344 31608 31608 -0.0016619051091311121 NTCIHHLCWD 10 Unmodified _NTCIHHLCWD_ 0 0 0 REV__ENSG00000008853|ENST00000251822|RHOBTB2 REV__ENSG00000008853|ENST00000251822|RHOBTB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7681274414062 2 621.26315 1240.51175 0.77632 0.0004823 0.18638 0.00011579 0.96271 0.00059809 621.2633297278929 80.461 4.4475 80.461 79.651 84.099 0 328 126 6 0 0 0 0.65108 1 15776 15776 16.149 0.30192 1 442300000 + 31971 13905 21330 21345 31609 31609 -0.09888816942770973 NTDEEDVVEE 10 Unmodified _NTDEEDVVEE_ 0 0 0 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.26611328125 2 589.738405 1177.46226 0.57618 0.00033979 1.3913 0.00082051 1.9675 0.0011603 589.739171323723 117.12 0.5556 112.63 112.35 112.91 -4.486 23 15 2 0 0 0 0.4708 1 23103 23103 26.268 4.7312 1 1873500 31972 7943 21331 21346 31610 31610 -0.11937574936905548 NTDEEDVVEE 10 Unmodified _NTDEEDVVEE_ 0 0 0 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 589.738405 1177.46226 0.57618 0.00033979 1.3913 0.00082051 1.9675 0.0011603 589.739171323723 117.12 0.5556 112.63 112.35 112.91 -4.486 0.028764 -0.00032717 NaN 26.268 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1873500 31973 7943 21331 21346 -0.11937574936905548 NTDEPPMVF 9 Oxidation (M) _NTDEPPM(Oxidation (M))VF_ NTDEPPM(1)VF NTDEPPM(56)VF 0 0 1 nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14;USP14|p.Y333Lfs*2|1|0.33|ENSG00000101557|chr18:203145-203146|-/T|frameshift_variant nc|ENSG00000101557|P54578-2|USP14 nc|ENSG00000101557|P54578-2|USP14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2869873046875 2 533.231507 1064.44846 NaN NaN NaN NaN NaN NaN NaN 97.577 1 97.577 97.077 98.077 0 0 0 0 0.04308 1 19124 19124 55.503 39.656 1 31974 2075 21332 21347 31611 31611 24 -0.08118479179029237 NTDEPPMVF 9 Oxidation (M) _NTDEPPM(Oxidation (M))VF_ NTDEPPM(1)VF NTDEPPM(40)VF 0 0 1 nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14;USP14|p.Y333Lfs*2|1|0.33|ENSG00000101557|chr18:203145-203146|-/T|frameshift_variant nc|ENSG00000101557|P54578-2|USP14 nc|ENSG00000101557|P54578-2|USP14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.273681640625 2 533.231507 1064.44846 NaN NaN NaN NaN NaN NaN NaN 97.613 1 97.613 97.113 98.113 0 0 0 0 0.089844 1 19131 19131 40.239 24.392 1 31975 2075 21332 21347 31612 31612 24 -0.08118479179029237 NTDFGDSGRLY 11 Unmodified _NTDFGDSGRLY_ 0 0 0 ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant;ZNF462|p.P1613Rfs*11|1|0.4|ENSG00000148143|chr9:106928746-106928746|C/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.R1168Gfs*9|1|0.38|ENSG00000148143|chr9:106927409-106927409|C/-|frameshift_variant ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7811279296875 2 622.780741 1243.54693 0.74212 0.00046218 0.080428 5.0089E-05 0.82255 0.00051227 622.7807385694116 81.007 0.64072 81.007 80.661 81.301 0 41 17 4 0 0 0 0.054565 3 15787 15739;15787;15819 109.15 67.191 1 9673900 31976 4728 21333 21348 31613;31614;31615 31614 -0.06510159609592847 NTDFGDSGRLY 11 Unmodified _NTDFGDSGRLY_ 0 0 0 ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant;ZNF462|p.P1613Rfs*11|1|0.4|ENSG00000148143|chr9:106928746-106928746|C/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.R1168Gfs*9|1|0.38|ENSG00000148143|chr9:106927409-106927409|C/-|frameshift_variant ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7573852539062 2 622.780741 1243.54693 0.93156 0.00058016 -0.55458 -0.00034538 0.37697 0.00023477 622.7803296401647 84.911 0.72535 81.247 80.917 81.642 -3.6641 57 20 4 0 0 0 0.030048 4 16630 16570;16613;16630;16658 128.87 73.635 1 10878000 31977 4728 21333 21348 31616;31617;31618;31619 31618 -0.06510159609592847 NTDFGDSGRLY 11 Unmodified _NTDFGDSGRLY_ 0 0 0 ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant;ZNF462|p.P1613Rfs*11|1|0.4|ENSG00000148143|chr9:106928746-106928746|C/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.R1168Gfs*9|1|0.38|ENSG00000148143|chr9:106927409-106927409|C/-|frameshift_variant ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7810668945312 2 622.780741 1243.54693 0.43913 0.00027348 -0.063168 -3.934E-05 0.37596 0.00023414 622.7806792177505 85.143 0.58882 81.234 80.944 81.533 -3.9093 41 16 3 0 0 0 0.036062 2 16200 16151;16200 87.123 43.351 1 9710100 31978 4728 21333 21348 31620;31621 31621 -0.06510159609592847 NTDFGDSGRLY 11 Unmodified _NTDFGDSGRLY_ 0 0 0 ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant;ZNF462|p.P1613Rfs*11|1|0.4|ENSG00000148143|chr9:106928746-106928746|C/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.R1168Gfs*9|1|0.38|ENSG00000148143|chr9:106927409-106927409|C/-|frameshift_variant ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7810668945312 2 622.780741 1243.54693 0.20524 0.00012782 0.15534 9.674E-05 0.36058 0.00022456 622.7808539361084 84.936 0.59206 81.224 80.871 81.463 -3.7117 44 16 3 0 0 0 0.032121 2 16231 16183;16231 128.87 77.24 1 11363000 31979 4728 21333 21348 31622;31623 31623 -0.06510159609592847 NTDKAVECY 9 Unmodified _NTDKAVECY_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENST00000495924.1_1_2:109347284-109347978:+|nuORF;RANBP2|p.N107Kfs*2|1|0.24|ENSG00000153201|chr2:108731384-108731385|-/A|frameshift_variant ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2611083984375 2 521.729132 1041.44371 0.21267 0.00011095 -0.52593 -0.00027439 -0.31326 -0.00016344 521.7289545517187 33.094 0.56054 33.094 32.78 33.341 0 32 15 3 0 0 0 0.12694 1 6015 6015 67.838 43.818 1 4663600 31980 4961 21334 21349 31624 31624 -0.07535363321767363 NTDKAVECY 9 Unmodified _NTDKAVECY_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;ENST00000495924.1_1_2:109347284-109347978:+|nuORF;RANBP2|p.N107Kfs*2|1|0.24|ENSG00000153201|chr2:108731384-108731385|-/A|frameshift_variant ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2601318359375 2 521.729132 1041.44371 -0.51868 -0.00027061 -1.0149 -0.00052952 -1.5336 -0.00080012 521.728594782341 35.361 0.74669 32.967 32.491 33.238 -2.3938 46 20 3 0 0 0 0.028199 1 6515 6515 103.82 47.647 1 5232000 31981 4961 21334 21349 31625 31625 -0.07535363321767363 NTDKEYNKCE 10 Unmodified _NTDKEYNKCE_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7672729492188 2 622.26661 1242.51867 0.83739 0.00052108 -2.1498 -0.0013377 -1.3124 -0.00081665 622.2653191109915 56.958 0.31219 54.064 53.922 54.234 -2.8944 14 8 2 0 0 0 0.31523 1 10935 10935 36.506 5.2379 1 991200 31982 5126;11929 21335 21350 31626 31626 -0.09289225581210303 NTDKEYNKCE 10 Unmodified _NTDKEYNKCE_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 622.26661 1242.51867 0.36681 0.00022826 -2.0544 -0.0012784 -1.6876 -0.0010501 622.2655566777753 54.051 0.25374 54.051 53.849 54.103 0 -0.0063906 9.3477E-05 NaN 36.506 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 648960 31983 5126;11929 21335 21350 -0.09289225581210303 NTDKIDYYF 9 Unmodified _NTDKIDYYF_ 0 0 0 REV__ENSG00000188738|ENST00000424728|FSIP2 REV__ENSG00000188738|ENST00000424728|FSIP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2565307617188 2 589.771854 1177.52915 0.40136 0.00023671 -2.0092 -0.001185 -1.6078 -0.00094826 589.7711849067076 84.785 0.37495 81.121 81.023 81.397 -3.6641 14 10 2 0 0 0 0.69192 1 16598 16598 26.884 8.7373 1 1044600 + 31984 19166 21336 21351 31627 31627 -0.05250874864486832 NTDLAWSLY 9 Unmodified _NTDLAWSLY_ 0 0 0 REV__nc|ENSG00000103342|P15170-2|GSPT1 REV__nc|ENSG00000103342|P15170-2|GSPT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2771606445312 2 541.761289 1081.50803 NaN NaN NaN NaN NaN NaN NaN 18.508 1 18.508 18.008 19.008 0 0 0 0 0.21469 1 2982 2982 19.257 0.88389 1 + 31985 14876 21337 21352 31628 31628 -0.029468401733083738 NTDLTSVVL 9 Unmodified _NTDLTSVVL_ 0 0 0 ENST00000225388.8_1_17:27591126-27591243:-|nuORF ENST00000225388.8_1_17:27591126-27591243:-|nuORF ENST00000225388.8_1_17:27591126-27591243:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.245849609375 2 481.263665 960.512776 0.58455 0.00028132 -0.40531 -0.00019506 0.17924 8.6261E-05 481.26347473543285 109.74 0.59766 105.56 105.12 105.72 -4.1826 26 16 2 0 0 0 0.40602 1 21104 21104 25.399 0 1 1265900 31986 8141 21338 21353 31629 31629 0.030940439694290944 NTDMSSFGLWS 11 Unmodified _NTDMSSFGLWS_ 0 0 0 REV__nc|ENSG00000136699|Q9NXE4-10|SMPD4 REV__nc|ENSG00000136699|Q9NXE4-10|SMPD4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7640380859375 2 622.766245 1243.51794 NaN NaN NaN NaN NaN NaN NaN 54.442 1 51.305 50.805 51.805 -3.1377 0 0 0 0.23087 1 10075 10075 7.609 1.8771 1 + 31987 16343 21339 21354 31630 31630 -0.09408020230239345 NTDNLLTEY 9 Unmodified _NTDNLLTEY_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1;ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant;ICE1|p.F326Lfs*82|1|0.38|ENSG00000164151|chr5:5457612-5457612|T/-|frameshift_variant;ENST00000505464.1_1_5:5423001-5437265:+|nuORF;ICE1|p.I82Ffs*14|1|0.33|ENSG00000164151|chr5:5441153-5441153|A/-|frameshift_variant ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2747802734375 2 541.753661 1081.49277 0.30491 0.00016519 0.28413 0.00015393 0.58904 0.00031911 541.7536607845502 112.4 1.1338 112.4 111.8 112.93 0 102 32 6 0 0 0 4.7767E-11 3 22111 22064;22070;22111 155.03 73.136 1 37187000 31988 5514 21340 21355 31631;31632;31633 31633 -0.044717517611843505 NTDNLLTEY 9 Unmodified _NTDNLLTEY_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1;ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant;ICE1|p.F326Lfs*82|1|0.38|ENSG00000164151|chr5:5457612-5457612|T/-|frameshift_variant;ENST00000505464.1_1_5:5423001-5437265:+|nuORF;ICE1|p.I82Ffs*14|1|0.33|ENSG00000164151|chr5:5441153-5441153|A/-|frameshift_variant ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2661743164062 2 541.753661 1081.49277 0.35236 0.00019089 -0.068101 -3.6894E-05 0.28426 0.000154 541.7535627437982 117.03 1.0441 112.54 112.04 113.08 -4.486 99 29 4 0 0 0 3.1336E-11 3 23046 23046;23054;23068 157.8 75.905 1 34694000 31989 5514 21340 21355 31634;31635;31636 31634 -0.044717517611843505 NTDNLLTEY 9 Unmodified _NTDNLLTEY_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1;ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant;ICE1|p.F326Lfs*82|1|0.38|ENSG00000164151|chr5:5457612-5457612|T/-|frameshift_variant;ENST00000505464.1_1_5:5423001-5437265:+|nuORF;ICE1|p.I82Ffs*14|1|0.33|ENSG00000164151|chr5:5441153-5441153|A/-|frameshift_variant ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2842407226562 2 541.753661 1081.49277 0.40555 0.00021971 -0.052839 -2.8626E-05 0.35271 0.00019108 541.7535828056954 117.19 1.1562 112.61 112.04 113.2 -4.5815 101 32 4 0 0 0 4.7767E-11 2 22478 22457;22478 155.03 69.754 1 29110000 31990 5514 21340 21355 31637;31638 31638 -0.044717517611843505 NTDNLLTEY 9 Unmodified _NTDNLLTEY_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1;ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant;ICE1|p.F326Lfs*82|1|0.38|ENSG00000164151|chr5:5457612-5457612|T/-|frameshift_variant;ENST00000505464.1_1_5:5423001-5437265:+|nuORF;ICE1|p.I82Ffs*14|1|0.33|ENSG00000164151|chr5:5441153-5441153|A/-|frameshift_variant ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2837524414062 2 541.753661 1081.49277 0.55647 0.00030147 -0.10613 -5.7496E-05 0.45034 0.00024397 541.7535479225426 116.92 1.096 112.56 111.99 113.09 -4.3585 102 30 5 0 0 0 2.4079E-13 1 22505 22505 163.04 66.751 1 34110000 31991 5514 21340 21355 31639 31639 -0.044717517611843505 NTDNREQQQQ 10 Unmodified _NTDNREQQQQ_ 0 0 0 REV__ZNF277|p.K246Nfs*87|1|0.16|ENSG00000198839|chr7:112330148-112330148|A/-|frameshift_variant REV__ZNF277|p.K246Nfs*87|1|0.16|ENSG00000198839|chr7:112330148-112330148|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7522583007812 2 630.781804 1259.54906 NaN NaN NaN NaN NaN NaN NaN 90.77 1 86.725 86.225 87.225 -4.0443 0 0 0 0.22588 1 17291 17291 13.042 0.80181 1 + 31992 19460 21341 21356 31640 31640 -0.07033730871808075 NTDNREQQQQ 10 Unmodified _NTDNREQQQQ_ 0 0 0 REV__ZNF277|p.K246Nfs*87|1|0.16|ENSG00000198839|chr7:112330148-112330148|A/-|frameshift_variant REV__ZNF277|p.K246Nfs*87|1|0.16|ENSG00000198839|chr7:112330148-112330148|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7691650390625 2 630.781804 1259.54906 NaN NaN NaN NaN NaN NaN NaN 90.989 1 86.894 86.394 87.394 -4.0946 0 0 0 0.22588 1 17336 17336 13.042 0 1 + 31993 19460 21341 21356 31641 31641 -0.07033730871808075 NTDPWAGYRY 10 Unmodified _NTDPWAGYRY_ 0 0 0 ENSG00000164024|ENST00000296411|METAP1;ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF ENSG00000164024|ENST00000296411|METAP1 ENSG00000164024|ENST00000296411|METAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7708740234375 2 621.780544 1241.54654 0.82044 0.00051013 -0.70554 -0.00043869 0.1149 7.1444E-05 621.7800474756748 101.98 1.1888 101.98 101.54 102.73 0 114 33 5 0 0 0 4.5321E-05 3 20065 19955;19975;20065 136.39 110.12 1 96838000 31994 5496 21342 21357 31642;31643;31644 31644 -0.06457534538822074 NTDPWAGYRY 10 Unmodified _NTDPWAGYRY_ 0 0 0 ENSG00000164024|ENST00000296411|METAP1;ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF ENSG00000164024|ENST00000296411|METAP1 ENSG00000164024|ENST00000296411|METAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7517700195312 2 621.780544 1241.54654 0.57646 0.00035843 -0.52857 -0.00032866 0.047882 2.9772E-05 621.7801885417006 106.84 1.3543 102.58 102.01 103.36 -4.2638 148 38 6 0 0 0 3.7614E-11 1 20994 20994 157.8 121.29 1 134640000 31995 5496 21342 21357 31645 31645 -0.06457534538822074 NTDPWAGYRY 10 Unmodified _NTDPWAGYRY_ 0 0 0 ENSG00000164024|ENST00000296411|METAP1;ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF ENSG00000164024|ENST00000296411|METAP1 ENSG00000164024|ENST00000296411|METAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.758544921875 2 621.780544 1241.54654 0.24433 0.00015192 -0.12855 -7.9929E-05 0.11578 7.1991E-05 621.7804356691566 106.73 1.3029 102.32 101.82 103.12 -4.4121 130 37 5 0 0 0 0.00016737 5 20466 20409;20447;20449;20466;20553 125.04 92.252 1 100480000 31996 5496 21342 21357 31646;31647;31648;31649;31650 31649 -0.06457534538822074 NTDSIFVSFG 10 Unmodified _NTDSIFVSFG_ 0 0 0 REV__ENST00000451653.5_2_3:42594755-42597434:-|nuORF REV__ENST00000451653.5_2_3:42594755-42597434:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.769775390625 2 543.758746 1085.50294 0.11692 6.3578E-05 -0.89328 -0.00048573 -0.77636 -0.00042215 543.7580468787296 92.737 1.2435 92.737 92.334 93.578 0 70 35 4 0 0 0 0.46818 1 18174 18174 34.402 0 1 8320800 + 31997 21810 21343 21358 31651 31651 -0.03639144035969366 NTDSPLRY 8 Unmodified _NTDSPLRY_ 0 0 0 ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2 ENSG00000168028|ENST00000301821|RPSA ENSG00000168028|ENST00000301821|RPSA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 966.471435546875 1 965.468686 964.461409 0.63486 0.00061293 -1.0341 -0.00099836 -0.39921 -0.00038542 965.4676206824445 51.598 2.1221 51.598 51.022 53.144 0 199 59 4 0 0 0 0.18075 1 10104 10104 47.594 5.7548 1 138600000 31998 5871 21344 21359 31652 31652 -0.022242800046228695 NTDSPLRY 8 Unmodified _NTDSPLRY_ 0 0 0 ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2 ENSG00000168028|ENST00000301821|RPSA ENSG00000168028|ENST00000301821|RPSA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 968.4764404296875 1 965.468686 964.461409 0.097822 9.4444E-05 -0.41356 -0.00039928 -0.31573 -0.00030483 965.4682480243606 54.329 2.6261 51.191 50.816 53.443 -3.1377 250 74 4 0 0 0 0.66247 1 10169 10169 18.146 6.5061 1 187800000 31999 5871 21344 21359 31653 31653 -0.022242800046228695 NTDSPLRY 8 Unmodified _NTDSPLRY_ 0 0 0 ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2 ENSG00000168028|ENST00000301821|RPSA ENSG00000168028|ENST00000301821|RPSA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 965.468686 964.461409 -0.18832 -0.00018182 -0.18535 -0.00017895 -0.37368 -0.00036077 965.4684885519106 54.084 2.475 51.2 50.872 53.347 -2.8837 0.026601 0.00028608 NaN 18.146 235 71 4 NaN NaN NaN NaN 0 NaN NaN 0 241430000 32000 5871 21344 21359 -0.022242800046228695 NTDSPLRY 8 Unmodified _NTDSPLRY_ 0 0 0 ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2 ENSG00000168028|ENST00000301821|RPSA ENSG00000168028|ENST00000301821|RPSA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 965.468686 964.461409 0.29327 0.00028314 -0.665 -0.00064203 -0.37173 -0.00035889 965.4679921110302 54.264 2.5193 51.129 50.801 53.321 -3.1352 -0.044536 -0.000177 NaN 18.146 214 71 4 NaN NaN NaN NaN 0 NaN NaN 0 228550000 32001 5871 21344 21359 -0.022242800046228695 NTDSPLRY 8 Unmodified _NTDSPLRY_ 0 0 0 ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2 ENSG00000168028|ENST00000301821|RPSA ENSG00000168028|ENST00000301821|RPSA MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 965.468686 964.461409 0.097822 9.4444E-05 -0.41356 -0.00039928 -0.31573 -0.00030483 965.4682480243606 54.329 2.6261 51.191 50.816 53.443 -3.1377 0.017935 6.5754E-05 NaN 18.146 250 74 4 NaN NaN NaN NaN 0 NaN NaN 0 187800000 32002 5871 21344 21359 -0.022242800046228695 NTDSPLRYV 9 Unmodified _NTDSPLRYV_ 0 0 0 ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2 ENSG00000168028|ENST00000301821|RPSA ENSG00000168028|ENST00000301821|RPSA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2742309570312 2 532.772188 1063.52982 0.71937 0.00038326 -1.5712 -0.00083707 -0.8518 -0.00045381 532.7712665847727 101.5 0.58678 97.181 97.053 97.64 -4.3208 27 16 2 0 0 0 6.0465E-11 2 19422 19422;19468 152.89 96.709 1 5311700 32003 5871 21345 21360 31654;31655 31654 0.0005996457521177945 NTDSPLRYV 9 Unmodified _NTDSPLRYV_ 0 0 0 ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2 ENSG00000168028|ENST00000301821|RPSA ENSG00000168028|ENST00000301821|RPSA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2738647460938 2 532.772188 1063.52982 0.46097 0.00024559 -1.3969 -0.00074422 -0.9359 -0.00049862 532.7712599759568 101.23 0.69904 97.242 97.066 97.766 -3.9895 41 19 3 0 0 0 4.8487E-06 1 19453 19453 140.63 90.7 1 4902300 32004 5871 21345 21360 31656 31656 0.0005996457521177945 NTDTSNCKGRY 11 Unmodified _NTDTSNCKGRY_ 0 0 0 REV__sp|Q6SWD0|RL12_HCMVMUncharacterizedproteinRL12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL12PE=4SV=1 REV__sp|Q6SWD0|RL12_HCMVMUncharacterizedproteinRL12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL12PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7674560546875 2 629.777676 1257.5408 0.3556 0.00022395 -0.072757 -4.5821E-05 0.28285 0.00017813 629.7778331546134 86.226 1.0876 86.226 85.824 86.911 0 49 30 3 0 0 0 0.44778 4 16824 16824;16846;16862;16871 31.268 10.854 1 3550500 + 32005 24724 21346 21361 31657;31658;31659;31660 31657 -0.07767001112779326 NTDTSNCKGRY 11 Unmodified _NTDTSNCKGRY_ 0 0 0 REV__sp|Q6SWD0|RL12_HCMVMUncharacterizedproteinRL12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL12PE=4SV=1 REV__sp|Q6SWD0|RL12_HCMVMUncharacterizedproteinRL12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL12PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.754638671875 2 629.777676 1257.5408 0.89403 0.00056304 -0.2063 -0.00012992 0.68773 0.00043312 629.7775751377186 90.695 1.0282 86.836 86.513 87.541 -3.8595 52 29 3 0 0 0 0.48392 1 17788 17788 38.176 11.907 1 2370100 + 32006 24724 21346 21361 31661 31661 -0.07767001112779326 NTDTSNCKGRY 11 Unmodified _NTDTSNCKGRY_ 0 0 0 REV__sp|Q6SWD0|RL12_HCMVMUncharacterizedproteinRL12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL12PE=4SV=1 REV__sp|Q6SWD0|RL12_HCMVMUncharacterizedproteinRL12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL12PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 629.777676 1257.5408 0.3556 0.00022395 -0.072757 -4.5821E-05 0.28285 0.00017813 629.7778331546134 86.226 1.0876 86.226 85.824 86.911 0 0 0 NaN 31.268 49 30 3 NaN NaN NaN NaN 0 NaN NaN 0 3550500 + 32007 24724 21346 21361 -0.07767001112779326 NTDTSNCKGRY 11 Unmodified _NTDTSNCKGRY_ 0 0 0 REV__sp|Q6SWD0|RL12_HCMVMUncharacterizedproteinRL12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL12PE=4SV=1 REV__sp|Q6SWD0|RL12_HCMVMUncharacterizedproteinRL12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL12PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 629.777676 1257.5408 0.89403 0.00056304 -0.2063 -0.00012992 0.68773 0.00043312 629.7775751377186 90.695 1.0282 86.836 86.513 87.541 -3.8595 0.13536 -0.00050457 NaN 38.176 52 29 3 NaN NaN NaN NaN 0 NaN NaN 0 2370100 + 32008 24724 21346 21361 -0.07767001112779326 NTDTSNCKGRY 11 Unmodified _NTDTSNCKGRY_ 0 0 0 REV__sp|Q6SWD0|RL12_HCMVMUncharacterizedproteinRL12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL12PE=4SV=1 REV__sp|Q6SWD0|RL12_HCMVMUncharacterizedproteinRL12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL12PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 629.777676 1257.5408 0.57438 0.00036173 0.37822 0.0002382 0.9526 0.00059993 629.7779077237373 90.72 1.0029 86.675 86.34 87.343 -4.0443 -0.024941 0.00023167 NaN 38.176 38 28 2 NaN NaN NaN NaN 0 NaN NaN 0 1670800 + 32009 24724 21346 21361 -0.07767001112779326 NTDTSNCKGRY 11 Unmodified _NTDTSNCKGRY_ 0 0 0 REV__sp|Q6SWD0|RL12_HCMVMUncharacterizedproteinRL12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL12PE=4SV=1 REV__sp|Q6SWD0|RL12_HCMVMUncharacterizedproteinRL12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL12PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 629.777676 1257.5408 0.39647 0.00024969 0.35881 0.00022597 0.75527 0.00047566 629.7779116156466 90.368 1.145 86.59 86.152 87.297 -3.7779 -0.11042 0.00020721 NaN 38.176 58 32 2 NaN NaN NaN NaN 0 NaN NaN 0 2495700 + 32010 24724 21346 21361 -0.07767001112779326 NTDVRDFIN 9 Unmodified _NTDVRDFIN_ 0 0 0 CDH10|p.R717S|1|0.38|ENSG00000040731|chr5:24487879-24487879|C/A|missense_variant;ENST00000503958.1_1_5:24487774-24493064:-|nuORF;CDH10|p.G769Afs*7|1|0.4|ENSG00000040731|chr5:24487724-24487724|C/-|frameshift_variant;ENSG00000040731|ENST00000264463|CDH10;ENSG00000113361|ENST00000265071|CDH6 CDH10|p.R717S|1|0.38|ENSG00000040731|chr5:24487879-24487879|C/A|missense_variant CDH10|p.R717S|1|0.38|ENSG00000040731|chr5:24487879-24487879|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7694091796875 2 547.26727 1092.51999 -0.013668 -7.4799E-06 0.5574 0.00030505 0.54373 0.00029757 547.2675126056148 43.937 0.79892 41.171 40.83 41.629 -2.7661 56 22 3 0 0 0 0.61228 1 7991 7991 12.241 0 1 4304400 32011 459 21347 21362 31662 31662 -0.022572234301151184 NTDVRDFIN 9 Unmodified _NTDVRDFIN_ 0 0 0 CDH10|p.R717S|1|0.38|ENSG00000040731|chr5:24487879-24487879|C/A|missense_variant;ENST00000503958.1_1_5:24487774-24493064:-|nuORF;CDH10|p.G769Afs*7|1|0.4|ENSG00000040731|chr5:24487724-24487724|C/-|frameshift_variant;ENSG00000040731|ENST00000264463|CDH10;ENSG00000113361|ENST00000265071|CDH6 CDH10|p.R717S|1|0.38|ENSG00000040731|chr5:24487879-24487879|C/A|missense_variant CDH10|p.R717S|1|0.38|ENSG00000040731|chr5:24487879-24487879|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.769287109375 2 547.26727 1092.51999 0.014293 7.8224E-06 0.67355 0.00036861 0.68784 0.00037643 547.2675522434113 43.96 0.8385 41.212 40.8 41.638 -2.7475 54 23 3 0 0 0 0.46882 1 7960 7960 21.537 4.4241 1 3705100 32012 459 21347 21362 31663 31663 -0.022572234301151184 NTDYAIEPG 9 Unmodified _NTDYAIEPG_ 0 0 0 nc|ENSG00000150627|Q8IZU2|WDR17;ENSG00000150627|ENST00000508596|WDR17;WDR17|p.L742Tfs*15|1|0.52|ENSG00000150627|chr4:176150140-176150141|-/A|frameshift_variant nc|ENSG00000150627|Q8IZU2|WDR17 nc|ENSG00000150627|Q8IZU2|WDR17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2734375 2 490.221997 978.429441 0.035375 1.7342E-05 -1.8599 -0.00091174 -1.8245 -0.0008944 490.22100980216464 42.222 0.48956 39.571 39.321 39.811 -2.651 22 13 2 0 0 0 0.081249 1 7548 7548 54.774 8.7526 1 2994500 32013 4829 21348 21363 31664 31664 -0.06063692478426219 NTEAFPHQH 9 Unmodified _NTEAFPHQH_ 0 0 0 SIN3A|p.S23N|1|0.25|ENSG00000169375|chr15:75430308-75430308|C/T|missense_variant SIN3A|p.S23N|1|0.25|ENSG00000169375|chr15:75430308-75430308|C/T|missense_variant SIN3A|p.S23N|1|0.25|ENSG00000169375|chr15:75430308-75430308|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2785034179688 2 540.746505 1079.47846 0.095196 5.1477E-05 0.85851 0.00046424 0.95371 0.00051572 540.7469545640856 47.907 1.1183 44.965 44.168 45.287 -2.9421 55 31 2 0 0 0 0.28819 1 8610 8610 32.305 6.9062 1 4841400 32014 25665 21349 21364 31665 31665 -0.058103593988107605 NTEECLKTGS 10 Unmodified _NTEECLKTGS_ 0 0 0 nc|ENSG00000054267|Q4LE39-3|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;nc|ENSG00000054267|Q4LE39-4|ARID4B;ARID4B|p.T939Rfs*2|2|0.22|ENSG00000054267|chr1:235182104-235182104|T/-|frameshift_variant;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-2|ARID4B nc|ENSG00000054267|Q4LE39-3|ARID4B nc|ENSG00000054267|Q4LE39-3|ARID4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2626953125 2 541.245146 1080.47574 0.061124 3.3083E-05 0.92198 0.00049902 0.9831 0.0005321 541.2455935994026 46.869 0.76361 43.927 43.476 44.24 -2.9421 38 21 3 0 0 0 0.32088 1 8571 8571 36.127 9.8589 1 16917000 32015 1262 21350 21365 31666 31666 -0.06127995638621542 NTEECLKTGS 10 Unmodified _NTEECLKTGS_ 0 0 0 nc|ENSG00000054267|Q4LE39-3|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;nc|ENSG00000054267|Q4LE39-4|ARID4B;ARID4B|p.T939Rfs*2|2|0.22|ENSG00000054267|chr1:235182104-235182104|T/-|frameshift_variant;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-2|ARID4B nc|ENSG00000054267|Q4LE39-3|ARID4B nc|ENSG00000054267|Q4LE39-3|ARID4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2805786132812 2 541.245146 1080.47574 -0.012082 -6.5393E-06 1.0952 0.00059278 1.0831 0.00058624 541.2457141216828 46.866 0.69712 43.999 43.611 44.308 -2.8665 38 19 3 0 0 0 0.15224 1 8583 8583 47.749 21.481 1 13207000 32016 1262 21350 21365 31667 31667 -0.06127995638621542 NTEEEGLKY 9 Unmodified _NTEEEGLKY_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79150390625 2 541.753661 1081.49277 0.59168 0.00032055 -0.44682 -0.00024207 0.14486 7.8479E-05 541.7542129870515 44.108 1.3852 44.108 43.814 45.199 0 161 39 6 0 0 0 0.12505 1 8300 8300 47.749 18.667 1 1423800000 32017 1150 21351 21366 31668 31668 -0.044717517611843505 NTEEEGLKY 9 Unmodified _NTEEEGLKY_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2650146484375 2 541.753661 1081.49277 0.65978 0.00035744 -0.66453 -0.00036001 -0.0047514 -2.5741E-06 541.7531559327473 46.448 0.73682 46.448 46.244 46.98 0 36 20 2 0 0 0 0.39339 1 8799 8799 36.506 17.249 1 1498500 32018 1150 21351 21366 31669 31669 -0.044717517611843505 NTEEEGLKY 9 Unmodified _NTEEEGLKY_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2801513671875 2 541.753661 1081.49277 0.16758 9.0789E-05 -0.086374 -4.6793E-05 0.081211 4.3996E-05 541.7543209463231 47.104 1.4709 44.263 43.94 45.411 -2.8409 171 41 6 0 0 0 0.0024901 1 8897 8897 137.42 101.38 1 1391900000 32019 1150 21351 21366 31670 31670 -0.044717517611843505 NTEEEGLKY 9 Unmodified _NTEEEGLKY_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2789306640625 2 541.753661 1081.49277 0.10446 5.6594E-05 -0.01243 -6.7338E-06 0.092035 4.986E-05 541.7535687269241 49.414 0.84408 46.533 46.201 47.045 -2.8811 37 23 2 0 0 0 0.19141 1 9394 9394 41.956 22.699 1 1585200 32020 1150 21351 21366 31671 31671 -0.044717517611843505 NTEEEGLKY 9 Unmodified _NTEEEGLKY_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7922973632812 2 541.753661 1081.49277 0.045115 2.4441E-05 0.11872 6.4316E-05 0.16383 8.8757E-05 541.7542924892252 47.198 1.4232 44.256 43.934 45.357 -2.9421 166 40 6 0 0 0 0.12505 1 8618 8618 47.749 18.667 1 1284200000 32021 1150 21351 21366 31672 31672 -0.044717517611843505 NTEEEGLKY 9 Unmodified _NTEEEGLKY_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7764282226562 2 541.753661 1081.49277 -0.0071135 -3.8537E-06 0.12259 6.6414E-05 0.11548 6.256E-05 541.7544902333074 47.156 1.8018 44.206 43.563 45.365 -2.9499 211 51 6 0 0 0 0.12505 3 8651 8574;8630;8651 47.749 18.667 1 1168900000 32022 1150 21351 21366 31673;31674;31675 31675 -0.044717517611843505 NTEERKAALKT 11 Unmodified _NTEERKAALKT_ 0 0 0 ENST00000373807.5_1_9:124074589-124093809:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;CON__Q3SX14;nc|ENSG00000148180|P06396|GSN ENST00000373807.5_1_9:124074589-124093809:+|nuORF ENST00000373807.5_1_9:124074589-124093809:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7734375 2 630.848958 1259.68336 NaN NaN NaN NaN NaN NaN NaN 148.73 1 148.73 148.23 149.23 0 0 0 0 0.22632 1 29768 29768 0.172 0.12821 1 + 32023 694 21352 21367 31676 31676 0.06390954620883349 NTEGLHHLY 9 Unmodified _NTEGLHHLY_ 0 0 0 nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000224960|ENST00000412172|PPP4R3C;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7945556640625 2 542.26453 1082.51451 0.023907 1.2964E-05 0.0023813 1.2913E-06 0.026288 1.4255E-05 542.2644650703901 46.969 0.44908 44.027 43.719 44.168 -2.9421 32 12 4 0 0 0 0.09143 2 8551 8544;8551 58.679 34.658 1 29113000 32024 7783 21353 21368 31677;31678 31678 -0.02344902221943812 NTEGLHHLY 9 Unmodified _NTEGLHHLY_ 0 0 0 nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000224960|ENST00000412172|PPP4R3C;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7881469726562 2 542.26453 1082.51451 -0.0078318 -4.2469E-06 0.0011797 6.397E-07 -0.0066521 -3.6072E-06 542.2645082779646 46.945 0.34727 44.006 43.75 44.097 -2.9392 27 9 4 0 0 0 0.10297 1 8567 8567 54.774 16.8 1 24683000 32025 7783 21353 21368 31679 31679 -0.02344902221943812 NTEGLHHLY 9 Unmodified _NTEGLHHLY_ 0 0 0 nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000224960|ENST00000412172|PPP4R3C;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.26453 1082.51451 0.59761 0.00032406 -0.72801 -0.00039477 -0.1304 -7.0711E-05 542.2640321808489 43.935 0.27752 43.935 43.745 44.023 0 -0.07442 -0.00053967 NaN 58.679 20 7 4 NaN NaN NaN NaN 0 NaN NaN 0 27100000 32026 7783 21353 21368 -0.02344902221943812 NTEGLHHLY 9 Unmodified _NTEGLHHLY_ 0 0 0 nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000224960|ENST00000412172|PPP4R3C;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.26453 1082.51451 0.18234 9.8877E-05 -0.24147 -0.00013094 -0.059133 -3.2066E-05 542.2643235511506 46.91 0.37909 44.069 43.798 44.178 -2.8409 0.059907 -1.2006E-05 NaN 58.679 31 10 4 NaN NaN NaN NaN 0 NaN NaN 0 34981000 32027 7783 21353 21368 -0.02344902221943812 NTEKKYAKT 9 Unmodified _NTEKKYAKT_ 0 0 0 REV__ENSG00000206531|ENST00000488794|CD200R1L;REV__nc|ENSG00000163606|Q8TD46-3|CD200R1 REV__ENSG00000206531|ENST00000488794|CD200R1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2725219726562 2 541.795663 1081.57677 0.0033607 1.8208E-06 0.23324 0.00012637 0.23661 0.00012819 541.7957380867344 48.588 0.72493 45.638 45.295 46.02 -2.9499 60 20 4 0 0 0 0.71527 1 8836 8836 19.257 3.4098 1 7789700 + 32028 19623;17589 21354 21369 31680 31680 0.03924824126374915 NTETYIKTI 9 Unmodified _NTETYIKTI_ 0 0 0 tr|U7SQS5|U7SQS5_FUSNUManganese/zinc/irontransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01562PE=3SV=1 tr|U7SQS5|U7SQS5_FUSNUManganese/zinc/irontransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01562PE=3SV=1 tr|U7SQS5|U7SQS5_FUSNUManganese/zinc/irontransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01562PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2705078125 2 541.790047 1081.56554 0.65742 0.00035618 -0.43992 -0.00023834 0.2175 0.00011784 541.7896810610987 46.396 0.51897 46.396 46.107 46.626 0 31 14 3 0 0 0 0.76271 1 8779 8779 6.2058 0 1 2313200 32029 26058 21355 21370 31681 31681 0.028020020322628625 NTETYIKTI 9 Unmodified _NTETYIKTI_ 0 0 0 tr|U7SQS5|U7SQS5_FUSNUManganese/zinc/irontransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01562PE=3SV=1 tr|U7SQS5|U7SQS5_FUSNUManganese/zinc/irontransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01562PE=3SV=1 tr|U7SQS5|U7SQS5_FUSNUManganese/zinc/irontransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01562PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2824096679688 2 541.790047 1081.56554 0.072151 3.9091E-05 -0.10101 -5.4729E-05 -0.028864 -1.5638E-05 541.7900304925386 49.467 0.66171 46.468 46.102 46.763 -2.999 34 18 3 0 0 0 0.47479 1 9069 9069 24.021 0 1 2911100 32030 26058 21355 21370 31682 31682 0.028020020322628625 NTFEAHIYS 9 Unmodified _NTFEAHIYS_ 0 0 0 ENSG00000171798|ENST00000304613|KNDC1;nc|ENSG00000171798|Q76NI1-4|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2710571289062 2 541.251089 1080.48762 0.62196 0.00033664 -0.43452 -0.00023518 0.18745 0.00010146 541.2507134546761 45.543 1.0445 45.543 45.199 46.244 0 100 29 5 0 0 0 0.48644 1 8637 8637 20.454 2.3073 1 32527000 32031 6171 21356 21371 31683 31683 -0.04940010833138331 NTFRQGCGP 9 Unmodified _NTFRQGCGP_ 0 0 0 REV__nc|ENSG00000115966|P15336-3|ATF2;REV__ATF7|p.P222Lfs*48|1|0.19|ENSG00000170653|chr12:53533190-53533190|C/-|frameshift_variant;REV__nc|ENSG00000170653|P17544-4|ATF7 REV__ATF7|p.P222Lfs*48|1|0.19|ENSG00000170653|chr12:53533190-53533190|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2550964355469 2 490.224351 978.434149 NaN NaN NaN NaN NaN NaN NaN 31.572 1 29.341 28.841 29.841 -2.2305 0 0 0 0.23508 1 5733 5733 10.074 0 1 + 32032 15458;13140;18174 21357 21372 31684 31684 -0.05593086816634241 NTHEPLDGP 9 Unmodified _NTHEPLDGP_ 0 0 0 REV__PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant REV__PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27392578125 2 490.227613 978.440674 0.50943 0.00024974 -0.54345 -0.00026642 -0.034022 -1.6679E-05 490.2273458093358 47.561 5.9984 47.561 44.849 50.848 0 217 171 2 0 0 0 0.25702 5 9385 8664;9385;9517;9586;9616 34.102 21.747 1 7435900 + 32033 18408 21358 21373 31685;31686;31687;31688;31689 31686 -0.049408703842800605 NTHEPLDGP 9 Unmodified _NTHEPLDGP_ 0 0 0 REV__PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant REV__PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2739562988281 2 490.227613 978.440674 -0.03573 -1.7516E-05 -0.035553 -1.7429E-05 -0.071283 -3.4945E-05 490.22757605288115 50.734 3.179 47.851 46.413 49.592 -2.8824 144 90 2 0 0 0 0.35443 4 9672 9368;9540;9672;9879 28.487 1.4843 1 3563900 + 32034 18408 21358 21373 31690;31691;31692;31693 31692 -0.049408703842800605 NTHEPLDGP 9 Unmodified _NTHEPLDGP_ 0 0 0 REV__PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant REV__PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2534484863281 2 490.227613 978.440674 0.13496 6.6161E-05 -0.30771 -0.00015085 -0.17275 -8.4688E-05 490.2274684173461 50.727 3.2905 47.682 46.266 49.556 -3.0453 144 94 2 0 0 0 0.38188 2 9603 9515;9603 26.884 6.4691 1 4439400 + 32035 18408 21358 21373 31694;31695 31695 -0.049408703842800605 NTHEPLDGP 9 Unmodified _NTHEPLDGP_ 0 0 0 REV__PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant REV__PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27435302734375 2 490.227613 978.440674 NaN NaN NaN NaN NaN NaN NaN 53.577 1 50.481 49.981 50.981 -3.0954 0 0 0 0.22621 1 9901 9901 15.847 0 1 + 32036 18408 21358 21373 31696 31696 -0.049408703842800605 NTHGSQFF 8 Unmodified _NTHGSQFF_ 0 0 0 ENST00000577627.1_1_18:5002795-5003119:-|nuORF ENST00000577627.1_1_18:5002795-5003119:-|nuORF ENST00000577627.1_1_18:5002795-5003119:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.1761474609375 3 313.143603 936.40898 NaN NaN NaN NaN NaN NaN NaN 62.016 1 58.647 58.147 59.147 -3.3694 0 0 0 0.21486 1 11571 11571 1.8442 0 1 32037 11469 21359 21374 31697 31697 -0.06176818347569224 NTHGSQFF 8 Unmodified _NTHGSQFF_ 0 0 0 ENST00000577627.1_1_18:5002795-5003119:-|nuORF ENST00000577627.1_1_18:5002795-5003119:-|nuORF ENST00000577627.1_1_18:5002795-5003119:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.11407470703125 3 313.143603 936.40898 NaN NaN NaN NaN NaN NaN NaN 13.682 1 12.471 11.971 12.971 -1.2106 0 0 0 0.21486 1 1752 1752 0.45834 0 1 32038 11469 21359 21374 31698 31698 -0.06176818347569224 NTHTQSLY 8 Unmodified _NTHTQSLY_ 0 0 0 REV__ENSG00000115548|ENST00000312912|KDM3A REV__ENSG00000115548|ENST00000312912|KDM3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7653503417969 2 482.230156 962.445759 -0.29181 -0.00014072 0.43848 0.00021145 0.14667 7.0729E-05 482.23020362634475 61.447 0.58173 61.447 61.118 61.699 0 24 16 2 0 0 0 0.95515 1 11764 11764 15.847 3.3156 1 1095400 + 32039 15438 21360 21375 31699 31699 -0.036965665216712296 NTHTQSLY 8 Unmodified _NTHTQSLY_ 0 0 0 REV__ENSG00000115548|ENST00000312912|KDM3A REV__ENSG00000115548|ENST00000312912|KDM3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7884826660156 2 482.230156 962.445759 -0.093508 -4.5092E-05 0.18319 8.8342E-05 0.089686 4.3249E-05 482.23008235973697 50.663 0.57259 47.782 47.428 48.001 -2.8815 39 15 3 0 0 0 0.40222 1 9620 9620 32.305 32.305 1 2109200 + 32040 15438 21360 21375 31700 31700 -0.036965665216712296 NTHTQSLY 8 Unmodified _NTHTQSLY_ 0 0 0 REV__ENSG00000115548|ENST00000312912|KDM3A REV__ENSG00000115548|ENST00000312912|KDM3A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 482.230156 962.445759 -0.093508 -4.5092E-05 0.18319 8.8342E-05 0.089686 4.3249E-05 482.23008235973697 50.663 0.57259 47.782 47.428 48.001 -2.8815 0.058202 0.00018623 NaN 32.305 39 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2109200 + 32041 15438 21360 21375 -0.036965665216712296 NTHTQSLY 8 Unmodified _NTHTQSLY_ 0 0 0 REV__ENSG00000115548|ENST00000312912|KDM3A REV__ENSG00000115548|ENST00000312912|KDM3A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 482.230156 962.445759 0.08159 3.9345E-05 -0.08183 -3.9461E-05 -0.00023973 -1.1561E-07 482.23011522115854 50.659 0.55548 47.614 47.389 47.945 -3.0453 -0.10958 -6.9372E-05 NaN 32.305 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1651100 + 32042 15438 21360 21375 -0.036965665216712296 NTKHDVYS 8 Unmodified _NTKHDVYS_ 0 0 0 RIPK4|p.D201N|1|0.4|ENSG00000183421|chr21:41751119-41751119|C/T|missense_variant RIPK4|p.D201N|1|0.4|ENSG00000183421|chr21:41751119-41751119|C/T|missense_variant RIPK4|p.D201N|1|0.4|ENSG00000183421|chr21:41751119-41751119|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78863525390625 2 482.230156 962.445759 0.039284 1.8944E-05 -1.1291 -0.00054448 -1.0898 -0.00052554 482.2293995275916 45.273 1.3407 42.483 41.778 43.119 -2.79 62 37 2 0 0 0 0.54916 1 8616 8616 25.399 2.663 1 1380600 32043 25611 21361 21376 31701 31701 -0.03696566521659861 NTKWNGSI 8 Unmodified _NTKWNGSI_ 0 0 0 REV__ENSG00000157152|ENST00000621198|SYN2 REV__ENSG00000157152|ENST00000621198|SYN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23529052734375 2 460.235242 918.45593 -0.39585 -0.00018218 0.56778 0.00026131 0.17193 7.9128E-05 460.23543543552967 38.878 0.66771 36.329 36.013 36.681 -2.5491 42 18 3 0 0 0 8448 1 7279 7279 3.5871 3.5871 1 3485400 + 32044 17285 21362 21377 31702 31702 -0.006559587964147795 NTLFCPAPPGY 11 Unmodified _NTLFCPAPPGY_ 0 0 0 ENST00000465287.1_1_22:31737393-31739122:-|nuORF;nc|ENSG00000100105|Q9HBE1-4|PATZ1 ENST00000465287.1_1_22:31737393-31739122:-|nuORF ENST00000465287.1_1_22:31737393-31739122:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2760009765625 2 590.278792 1178.54303 NaN NaN NaN NaN NaN NaN NaN 146.22 1 141.11 140.61 141.61 -5.1108 0 0 0 0.23324 1 28275 28275 5.7319 0.43497 1 32045 10119 21363 21378 31703 31703 -0.039099206370337924 NTLMLDGR 8 Unmodified _NTLMLDGR_ 0 0 0 REV__ENST00000552030.5_1_12:109042755-109052582:-|nuORF REV__ENST00000552030.5_1_12:109042755-109052582:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2359924316406 2 460.236927 918.459301 0.028603 1.3164E-05 -2.4832 -0.0011429 -2.4546 -0.0011297 460.2358384610171 58.073 0.56619 54.821 54.465 55.032 -3.2517 23 15 2 0 0 0 0.64512 1 10792 10792 19.257 2.3147 1 560700 + 32046 22941 21364 21379 31704 31704 -0.0031903201407885717 NTLYRLCP 8 Unmodified _NTLYRLCP_ 0 0 0 AMOTL2|p.P200Lfs*19|1|0.39|ENSG00000114019|chr3:134370835-134370835|G/-|frameshift_variant;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2 AMOTL2|p.P200Lfs*19|1|0.39|ENSG00000114019|chr3:134370835-134370835|G/-|frameshift_variant AMOTL2|p.P200Lfs*19|1|0.39|ENSG00000114019|chr3:134370835-134370835|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2545471191406 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 51.171 1 48.289 47.789 48.789 -2.8824 0 0 0 0.20896 1 9720 9720 18.135 0 1 32047 149 21365 21380 31705 31705 0.005578448826327076 NTMTAKLRG 9 Unmodified _NTMTAKLRG_ 0 0 0 REV__ENST00000425861.1_1_9:90356637-90356865:+|nuORF REV__ENST00000425861.1_1_9:90356637-90356865:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 331.0071105957031 3 331.183293 990.528049 -0.3428 -0.00011353 0.88073 0.00029168 0.53792 0.00017815 331.18353813950347 87.053 1.2453 83.326 82.802 84.047 -3.727 100 34 4 0 0 0 0.87609 1 17093 17093 2.2828 0.80087 1 28487000 + 32048 21559 21366 21381 31706 31706 0.03240632285644551 NTMTAKLRG 9 Unmodified _NTMTAKLRG_ 0 0 0 REV__ENST00000425861.1_1_9:90356637-90356865:+|nuORF REV__ENST00000425861.1_1_9:90356637-90356865:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 330.9980163574219 3 331.183293 990.528049 0.3059 0.00010131 0.23837 7.8946E-05 0.54428 0.00018026 331.18332879967386 87.228 1.1264 83.278 82.718 83.844 -3.9503 81 31 3 0 0 0 0.87497 1 16678 16678 2.4985 1.0166 1 17448000 + 32049 21559 21366 21381 31707 31707 0.03240632285644551 NTMTAKLRG 9 Unmodified _NTMTAKLRG_ 0 0 0 REV__ENST00000425861.1_1_9:90356637-90356865:+|nuORF REV__ENST00000425861.1_1_9:90356637-90356865:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 331.183293 990.528049 -0.56725 -0.00018786 1.0763 0.00035645 0.50904 0.00016859 331.18360711611507 86.979 1.5858 83.25 82.693 84.279 -3.7289 -0.034545 0.00034602 NaN 2.4985 115 44 4 NaN NaN NaN NaN 0 NaN NaN 0 21265000 + 32050 21559 21366 21381 0.03240632285644551 NTMYMYRHE 9 Unmodified _NTMYMYRHE_ 0 0 0 ENSG00000138031|ENST00000679454|ADCY3;ADCY3|p.V415Cfs*27|1|0.38|ENSG00000138031|chr2:24839985-24839985|C/-|frameshift_variant ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7720947265625 2 622.762983 1243.51141 0.30953 0.00019276 2.4035 0.0014968 2.713 0.0016895 623.2679427793181 138.94 0.18217 133.98 133.92 134.1 -4.952 6 4 2 0 0 0 0.64791 1 26747 26747 0.40827 0.36448 1 1106400 32051 4139 21367 21382 31708 31708 -0.10060236662616262 NTPKTKEGYY 10 Unmodified _NTPKTKEGYY_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2739868164062 2 600.798403 1199.58225 0.47124 0.00028312 -0.26996 -0.00016219 0.20128 0.00012093 600.7981677443479 128.82 0.88182 124.01 123.59 124.47 -4.817 72 24 4 0 0 0 0.72988 1 24679 24679 8.1555 0.54658 1 22973000 32052 26528 21368 21383 31709 31709 -0.00955497081804424 NTPSSRIF 8 Unmodified _NTPSSRIF_ 0 0 0 nc|ENSG00000225725|P0C841|FAM66E;ENST00000535567.5_1_12:8347048-8347931:+|nuORF nc|ENSG00000225725|P0C841|FAM66E nc|ENSG00000225725|P0C841|FAM66E MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.52581787109375 2 461.243067 920.47158 -0.10943 -5.0474E-05 -0.87772 -0.00040484 -0.98715 -0.00045532 461.2425207724391 62.054 1.0197 62.054 61.463 62.483 0 67 29 3 0 0 0 0.40222 1 11930 11930 32.305 1.6689 1 5999900 32053 11018 21369 21384 31710 31710 0.008163277206335806 NTQNFKPA 8 Unmodified _NTQNFKPA_ 0 0 0 ENSG00000125675|ENST00000620443|GRIA3;nc|ENSG00000125675|P42263|GRIA3 ENSG00000125675|ENST00000620443|GRIA3 ENSG00000125675|ENST00000620443|GRIA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2352600097656 2 460.235242 918.45593 0.022414 1.0316E-05 0.562 0.00025865 0.58441 0.00026897 460.2354198351024 76.828 0.82706 73.061 72.505 73.332 -3.7664 39 23 2 0 0 0 8448 1 14528 14528 2.643 0 1 1550800 32054 3375 21370 21385 31711 31711 -0.006559587964261482 NTQTEQKL 8 Unmodified _NTQTEQKL_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant;KIF5B|p.Y228Sfs*3|1|0.11|ENSG00000170759|chr10:32037283-32037284|AA/-|frameshift_variant ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2489929199219 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 84.007 1 84.007 83.507 84.507 0 0 0 0 0.19753 1 16378 16378 25.399 2.663 1 32055 6094 21371 21386 31712 31712 0.005799891668516466 NTRGDRRDP 9 Unmodified _NTRGDRRDP_ 0 0 0 ENST00000301204.7_1_19:42828913-42829189:+|nuORF ENST00000301204.7_1_19:42828913-42829189:+|nuORF ENST00000301204.7_1_19:42828913-42829189:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7722778320312 2 543.773585 1085.53262 NaN NaN NaN NaN NaN NaN NaN 86.631 1 82.904 82.404 83.404 -3.727 0 0 0 0.21434 1 16936 16936 19.362 1.227 1 32056 8557 21372 21387 31713 31713 -0.006727672472152335 NTRRSSQA 8 Unmodified _NTRRSSQA_ 0 0 0 ENST00000443339.5_1_3:9475802-9506425:+|nuORF;ENST00000413704.5_1_3:9487316-9517772:+|nuORF;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;SETD5|p.K1129Nfs*15|1|0.41|ENSG00000168137|chr3:9473422-9473422|A/-|frameshift_variant;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;SETD5|p.T1366Kfs*4|1|0.35|ENSG00000168137|chr3:9475859-9475859|C/-|frameshift_variant;ENSG00000168137|ENST00000402198|SETD5 ENST00000443339.5_1_3:9475802-9506425:+|nuORF ENST00000443339.5_1_3:9475802-9506425:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2391052246094 2 460.238847 918.463141 NaN NaN NaN NaN NaN NaN NaN 71.204 1 67.954 67.454 68.454 -3.2492 0 0 0 0.22628 1 13861 13861 32.898 19.283 1 32057 5883 21373 21388 31714 31714 0.0006477380400156107 NTRRWQNF 8 Unmodified _NTRRWQNF_ 0 0 0 ENST00000508281.2_1_5:137219022-137219178:-|nuORF ENST00000508281.2_1_5:137219022-137219178:-|nuORF ENST00000508281.2_1_5:137219022-137219178:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.3260192871094 3 374.524818 1120.55262 NaN NaN NaN NaN NaN NaN NaN 13.052 1 12.042 11.542 12.542 -1.0098 0 0 0 0.21486 1 1864 1864 0.45834 0 1 32058 10711 21374 21389 31715 31715 -0.0028297151663991826 NTRSLLREY 9 Unmodified _NTRSLLREY_ 0 0 0 nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17 nc|ENSG00000152942|O75943-3|RAD17 nc|ENSG00000152942|O75943-3|RAD17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3133544921875 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 55.162 1 52.278 51.778 52.778 -2.8837 0 0 0 0.23508 1 10549 10549 10.824 1.4408 1 32059 4947 21375 21390 31716 31716 0.040190312492541125 NTRSMELE 8 Unmodified _NTRSMELE_ 0 0 0 REV__ENSG00000146426|ENST00000682666|TIAM2 REV__ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.264404296875 2 490.229299 978.444045 -0.20797 -0.00010195 -1.5151 -0.00074276 -1.7231 -0.00084472 490.2287473667411 56.777 0.91805 53.601 53.187 54.105 -3.1761 33 25 2 0 0 0 0.54916 1 10582 10582 25.399 6.1423 1 1580500 + 32060 16889 21376 21391 31717 31717 -0.04603943601910032 NTRSPVPCDP 10 Unmodified _NTRSPVPCDP_ 0 0 0 REV__ENSG00000150457|ENST00000382592|LATS2 REV__ENSG00000150457|ENST00000382592|LATS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77783203125 2 543.255848 1084.49714 0.28559 0.00015515 -2.3497 -0.0012765 -2.0641 -0.0011214 543.2541961311352 63.255 0.29792 60.257 60.086 60.384 -2.9975 10 8 2 0 0 0 0.80147 1 12187 12187 20.415 6.5085 1 576930 + 32061 17032 21377 21392 31718 31718 -0.041725658192717674 NTSDTGWAK 9 Unmodified _NTSDTGWAK_ 0 0 0 ENSG00000005187|ENST00000289416|ACSM3;ACSM3|p.T549Nfs*29|2|0.31|ENSG00000005187|chr16:20796453-20796454|-/A|frameshift_variant;nc|ENSG00000005187|Q53FZ2-2|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25604248046875 2 490.227613 978.440674 0.50943 0.00024974 -0.54345 -0.00026642 -0.034022 -1.6679E-05 490.2273458093358 47.561 5.9984 47.561 44.849 50.848 0 217 171 2 0 0 0 0.44932 1 9478 9478 22.736 0.98964 1 7435900 32062 40 21378 21393 31719 31719 -0.049408703842800605 NTSDTGWAK 9 Unmodified _NTSDTGWAK_ 0 0 0 ENSG00000005187|ENST00000289416|ACSM3;ACSM3|p.T549Nfs*29|2|0.31|ENSG00000005187|chr16:20796453-20796454|-/A|frameshift_variant;nc|ENSG00000005187|Q53FZ2-2|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2655029296875 2 490.227613 978.440674 -0.034543 -1.6934E-05 1.5364 0.00075319 1.5019 0.00073626 490.22834983470875 56.629 0.76161 53.734 53.337 54.098 -2.8944 28 21 2 0 0 0 0.5685 1 10903 10903 15.248 1.3424 1 1653300 32063 40 21378 21393 31720 31720 -0.049408703842800605 NTSDTGWAK 9 Unmodified _NTSDTGWAK_ 0 0 0 ENSG00000005187|ENST00000289416|ACSM3;ACSM3|p.T549Nfs*29|2|0.31|ENSG00000005187|chr16:20796453-20796454|-/A|frameshift_variant;nc|ENSG00000005187|Q53FZ2-2|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26519775390625 2 490.227613 978.440674 -0.30668 -0.00015034 0.21113 0.0001035 -0.095556 -4.6844E-05 490.2277288453064 50.782 3.151 47.731 46.197 49.348 -3.0517 149 90 2 0 0 0 0.27986 2 9494 9242;9494 32.786 8.7651 1 4717000 32064 40 21378 21393 31721;31722 31722 -0.049408703842800605 NTSLQWSNP 9 Unmodified _NTSLQWSNP_ 0 0 0 CADM2|p.L281Pfs*5|1|0.15|ENSG00000175161|chr3:85961546-85961549|TAAA/-|frameshift_variant;ENSG00000175161|ENST00000383699|CADM2;nc|ENSG00000175161|Q8N3J6|CADM2;nc|ENSG00000175161|Q8N3J6-3|CADM2 CADM2|p.L281Pfs*5|1|0.15|ENSG00000175161|chr3:85961546-85961549|TAAA/-|frameshift_variant CADM2|p.L281Pfs*5|1|0.15|ENSG00000175161|chr3:85961546-85961549|TAAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.685302734375 2 523.748713 1045.48287 NaN NaN NaN NaN NaN NaN NaN 33.837 1 31.69 31.19 32.19 -2.1468 0 0 0 0.1964 1 5914 5914 0.40827 0 1 32065 366 21379 21394 31723 31723 -0.038048949759058814 NTSSPPLSPG 10 Unmodified _NTSSPPLSPG_ 0 0 0 nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A;BCL11A|p.L360Sfs*61|3|0.26|ENSG00000119866|chr2:60461834-60461834|G/-|frameshift_variant;BCL11A|p.S554Vfs*18|1|0.05|ENSG00000119866|chr2:60461252-60461253|-/C|frameshift_variant nc|ENSG00000119866|Q9H165-2|BCL11A nc|ENSG00000119866|Q9H165-2|BCL11A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7380065917969 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 50.64 1 47.759 47.259 48.259 -2.8811 0 0 0 0.22518 1 9609 9609 22.736 3.2973 1 32066 3104 21380 21395 31724 31724 -0.018436997244634767 NTSVSLGNIG 10 Unmodified _NTSVSLGNIG_ 0 0 0 REV__nc|ENSG00000164347|Q969S9-5|GFM2 REV__nc|ENSG00000164347|Q969S9-5|GFM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.1650085449219 3 321.169818 960.487624 NaN NaN NaN NaN NaN NaN NaN 77.466 1 74.003 73.503 74.503 -3.4633 0 0 0 0.22588 1 15125 15125 1.5923 0 1 + 32067 24137 21381 21396 31725 31725 0.005799891668857526 NTTKHTYD 8 Unmodified _NTTKHTYD_ 0 0 0 TENM2|p.Y2201H|1|0.12|ENSG00000145934|chr5:168247540-168247540|T/C|missense_variant TENM2|p.Y2201H|1|0.12|ENSG00000145934|chr5:168247540-168247540|T/C|missense_variant TENM2|p.Y2201H|1|0.12|ENSG00000145934|chr5:168247540-168247540|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26416015625 2 490.227613 978.440674 -0.03573 -1.7516E-05 -0.035553 -1.7429E-05 -0.071283 -3.4945E-05 490.22757605288115 50.734 3.179 47.851 46.413 49.592 -2.8824 144 90 2 0 0 0 0.17453 1 9587 9587 48.346 0.59716 1 3563900 32068 25834 21382 21397 31726 31726 -0.04940870384302798 NTVERLIHEF 10 Unmodified _NTVERLIHEF_ 0 0 0 nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENSG00000081014|ENST00000261842|AP4E1 nc|ENSG00000081014|Q9UPM8-2|AP4E1 nc|ENSG00000081014|Q9UPM8-2|AP4E1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7516479492188 2 629.332944 1256.65134 0.37303 0.00023476 -0.21272 -0.00013387 0.16031 0.00010089 629.3328691303822 86.061 0.66904 86.061 85.683 86.352 0 38 18 3 0 0 0 0.67319 1 16786 16786 13.906 1.6654 1 4739300 32069 1622 21383 21398 31727 31727 0.03327586937780325 NTVERLIHEF 10 Unmodified _NTVERLIHEF_ 0 0 0 nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENSG00000081014|ENST00000261842|AP4E1 nc|ENSG00000081014|Q9UPM8-2|AP4E1 nc|ENSG00000081014|Q9UPM8-2|AP4E1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 629.332944 1256.65134 0.87341 0.00054966 -0.34938 -0.00021988 0.52402 0.00032978 629.3327869494741 89.778 0.78748 85.919 85.439 86.226 -3.8595 0.0043097 -0.00016003 NaN 13.906 34 21 2 NaN NaN NaN NaN 0 NaN NaN 0 3959700 32070 1622 21383 21398 0.03327586937780325 NTVERLIHEF 10 Unmodified _NTVERLIHEF_ 0 0 0 nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENSG00000081014|ENST00000261842|AP4E1 nc|ENSG00000081014|Q9UPM8-2|AP4E1 nc|ENSG00000081014|Q9UPM8-2|AP4E1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 629.332944 1256.65134 0.61015 0.00038399 -0.42912 -0.00027006 0.18103 0.00011393 629.3327792808217 89.868 0.6487 85.823 85.551 86.2 -4.0443 -0.091218 -0.0002604 NaN 13.906 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4400900 32071 1622 21383 21398 0.03327586937780325 NTVERLIHEF 10 Unmodified _NTVERLIHEF_ 0 0 0 nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENSG00000081014|ENST00000261842|AP4E1 nc|ENSG00000081014|Q9UPM8-2|AP4E1 nc|ENSG00000081014|Q9UPM8-2|AP4E1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 629.332944 1256.65134 0.4249 0.0002674 0.061355 3.8613E-05 0.48625 0.00030601 629.3330217653493 89.632 0.73609 85.855 85.522 86.259 -3.7779 -0.059939 0.00035695 NaN 13.906 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2749300 32072 1622 21383 21398 0.03327586937780325 NTVFIFSTD 9 Unmodified _NTVFIFSTD_ 0 0 0 nc|ENSG00000113273|P15848-2|ARSB;ENSG00000113273|ENST00000264914|ARSB nc|ENSG00000113273|P15848-2|ARSB nc|ENSG00000113273|P15848-2|ARSB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2676391601562 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 27.368 1 27.368 26.868 27.868 0 0 0 0 0.19638 1 4827 4827 1.2148 0 1 32073 2734 21384 21399 31728 31728 -0.022422425476179342 NTVFYNTDL 9 Unmodified _NTVFYNTDL_ 0 0 0 nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7698364257812 2 543.758746 1085.50294 0.26166 0.00014228 -0.20576 -0.00011189 0.055893 3.0393E-05 543.7585750208929 96.889 0.76622 92.791 92.385 93.151 -4.0978 47 21 3 0 0 0 0.66788 1 19078 19078 12.241 2.8575 1 7009700 32074 5191 21385 21400 31729 31729 -0.03639144035946629 NTVTYTCK 8 Unmodified _NTVTYTCK_ 0 0 0 SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1 SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2591247558594 2 465.223485 928.432418 NaN NaN NaN NaN NaN NaN NaN 55.383 1 52.499 51.999 52.999 -2.8837 0 0 0 0.20761 1 10597 10597 19.257 4.4187 1 32075 5600 21386 21401 31730 31730 -0.03466140625266689 NTVTYTCK 8 Unmodified _NTVTYTCK_ 0 0 0 SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1 SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2366027832031 2 465.223485 928.432418 NaN NaN NaN NaN NaN NaN NaN 54.401 1 51.266 50.766 51.766 -3.1352 0 0 0 0.21486 1 10035 10035 10.824 1.4765 1 32076 5600 21386 21401 31731 31731 -0.03466140625266689 NTWEHELFQ 9 Unmodified _NTWEHELFQ_ 0 0 0 REV__DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant REV__DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2725219726562 2 602.275095 1202.53564 NaN NaN NaN NaN NaN NaN NaN 38.049 1 35.607 35.107 36.107 -2.4419 0 0 0 0.23508 1 6759 6759 13.042 1.4022 1 + 32077 13633 21387 21402 31732 31732 -0.05752936913108897 NTWKTSAF 8 Unmodified _NTWKTSAF_ 0 0 0 CA5A|p.L184*|1|0.08|ENSG00000174990|chr16:87902429-87902429|A/-|frameshift_variant;ENSG00000174990|ENST00000649794|CA5A CA5A|p.L184*|1|0.08|ENSG00000174990|chr16:87902429-87902429|A/-|frameshift_variant CA5A|p.L184*|1|0.08|ENSG00000174990|chr16:87902429-87902429|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.0057373046875 2 477.737617 953.460681 0.34311 0.00016392 -0.21582 -0.0001031 0.12729 6.0812E-05 477.7374768408502 147.99 0.62805 142.93 142.6 143.22 -5.0595 37 17 3 0 0 0 8448 1 28651 28651 2.643 0 1 3136700 32078 355 21388 21403 31733 31733 -0.017910746536699662 NTYALQVAR 9 Unmodified _NTYALQVAR_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant;FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.0784912109375 3 345.857574 1034.55089 -0.35381 -0.00012237 0.54476 0.00018841 0.19095 6.6043E-05 345.85765943911855 48.179 0.25698 45.31 45.125 45.382 -2.869 10 6 2 0 0 0 0.8799 1 9107 9107 2.4985 1.6341 1 545610 32079 7191 21389 21404 31734 31734 0.03499974674741679 NVASKFSKY 9 Unmodified _NVASKFSKY_ 0 0 0 tr|U7STA9|U7STA9_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1 tr|U7STA9|U7STA9_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1 tr|U7STA9|U7STA9_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2660522460938 2 522.279649 1042.54475 -0.26128 -0.00013646 1.5956 0.00083336 1.3343 0.0006969 522.2804184800003 59.398 0.38062 56.488 56.318 56.699 -2.9105 14 10 2 0 0 0 0.68435 1 11444 11444 7.2892 0 1 552650 32080 26135 21390 21405 31735 31735 0.025174564432290936 NVATLATGSQ 10 Unmodified _NVATLATGSQ_ 0 0 0 REV__ENST00000600804.1_1_19:59065240-59065579:-|nuORF REV__ENST00000600804.1_1_19:59065240-59065579:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2487487792969 2 481.251089 960.487624 0.08258 3.9742E-05 -0.81517 -0.0003923 -0.73259 -0.00035256 481.2505084892255 37.909 2.4506 37.909 36.887 39.338 0 134 69 4 0 0 0 0.65108 1 6816 6816 16.149 0.30192 1 99259000 + 32081 23413 21391 21406 31736 31736 0.005799891668630153 NVCMHLTNY 9 Unmodified _NVCMHLTNY_ 0 0 0 nc|ENSG00000213471|A6NNM8|TTLL13;ENSG00000213471|ENST00000641754|TTLL13;nc|ENSG00000213471|A6NNM8-2|TTLL13 nc|ENSG00000213471|A6NNM8|TTLL13 nc|ENSG00000213471|A6NNM8|TTLL13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7798461914062 2 547.741519 1093.46849 NaN NaN NaN NaN NaN NaN NaN 32.433 1 32.433 31.933 32.933 0 0 0 0 0.23508 1 5890 5890 7.9102 1.187 1 32082 12590 21392 21407 31737 31737 -0.07451006720066289 NVCVCREGY 9 Unmodified _NVCVCREGY_ 0 0 0 ENSG00000146530|ENST00000275358|VWDE;nc|ENSG00000146530|Q8N2E2-3|VWDE ENSG00000146530|ENST00000275358|VWDE ENSG00000146530|ENST00000275358|VWDE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.263427734375 2 521.725869 1041.43719 -0.19223 -0.00010029 1.3263 0.00069198 1.1341 0.00059169 521.7265146237005 96.953 0.41576 92.856 92.632 93.047 -4.0978 15 11 2 0 0 0 0.68435 1 18981 18981 7.2892 0 1 1324200 32083 4659 21393 21408 31738 31738 -0.08187579754144281 NVDAADIGEY 10 Unmodified _NVDAADIGEY_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2832641601562 2 533.738011 1065.46147 -0.019607 -1.0465E-05 0.16068 8.5764E-05 0.14108 7.5298E-05 533.7379618042548 49.364 0.63274 46.357 46.207 46.839 -3.0068 25 17 2 0 0 0 0.39316 1 9102 9102 31.268 4.3847 1 835250 32084 5053;26536 21394 21409 31739 31739 -0.0686432479526502 NVDDPDAANY 10 Unmodified _NVDDPDAANY_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7688598632812 2 547.225268 1092.43598 0.010672 5.84E-06 0.27185 0.00014877 0.28253 0.00015461 547.2256531773079 45.991 0.72229 43.125 42.796 43.518 -2.8653 40 20 3 0 0 0 0.84217 1 8361 8361 15.248 0 1 3388500 32085 6695 21395 21410 31740 31740 -0.10653799317719859 NVDDPTGNF 9 Unmodified _NVDDPTGNF_ 0 0 0 ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2 ENST00000515209.5_1_5:176759089-176761331:-|nuORF ENST00000515209.5_1_5:176759089-176761331:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2767028808594 2 489.711796 977.40904 -0.13805 -6.7605E-05 0.089602 4.3879E-05 -0.048449 -2.3726E-05 489.71188614716726 66.222 0.62206 66.222 65.896 66.518 0 29 17 2 0 0 0 0.39339 1 12803 12803 43.772 19.752 1 5639500 32086 5970 21396 21411 31741 31741 -0.08056863138233439 NVDDPTGNF 9 Unmodified _NVDDPTGNF_ 0 0 0 ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2 ENST00000515209.5_1_5:176759089-176761331:-|nuORF ENST00000515209.5_1_5:176759089-176761331:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2763977050781 2 489.711796 977.40904 0.029958 1.4671E-05 0.19179 9.3919E-05 0.22174 0.00010859 489.71184915267816 69.505 0.85078 66.325 65.904 66.755 -3.1796 40 23 2 0 0 0 0.18701 1 13510 13510 59.368 35.348 1 4645800 32087 5970 21396 21411 31742 31742 -0.08056863138233439 NVDDPTGNF 9 Unmodified _NVDDPTGNF_ 0 0 0 ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2 ENST00000515209.5_1_5:176759089-176761331:-|nuORF ENST00000515209.5_1_5:176759089-176761331:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2763671875 2 489.711796 977.40904 0.48643 0.00023821 0.055596 2.7226E-05 0.54202 0.00026544 489.71182139809497 69.944 0.94444 66.365 66.038 66.982 -3.5798 41 26 2 0 0 0 0.23009 1 13166 13166 55.503 27.874 1 4113200 32088 5970 21396 21411 31743 31743 -0.08056863138233439 NVDDPTGNF 9 Unmodified _NVDDPTGNF_ 0 0 0 ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2 ENST00000515209.5_1_5:176759089-176761331:-|nuORF ENST00000515209.5_1_5:176759089-176761331:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2764587402344 2 489.711796 977.40904 0.096699 4.7355E-05 0.3362 0.00016464 0.4329 0.000212 489.7119632906535 69.774 0.83812 66.384 66.121 66.959 -3.3903 49 23 3 0 0 0 0.39339 1 13204 13204 43.772 16.144 1 4693500 32089 5970 21396 21411 31744 31744 -0.08056863138233439 NVDEGQIENY 10 Unmodified _NVDEGQIENY_ 0 0 0 nc|ENSG00000205189|Q96DT7-4|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10;ENSG00000205189|ENST00000455036|ZBTB10 nc|ENSG00000205189|Q96DT7-4|ZBTB10 nc|ENSG00000205189|Q96DT7-4|ZBTB10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2562255859375 2 590.759475 1179.5044 0.65569 0.00038735 -0.38689 -0.00022856 0.26879 0.00015879 590.759128841214 81.491 0.65633 81.491 81.162 81.818 0 30 18 2 0 0 0 0.83271 1 15896 15896 21.537 1.1224 1 4829100 32090 7632 21397 21412 31745 31745 -0.07817554737835053 NVDEGQIENY 10 Unmodified _NVDEGQIENY_ 0 0 0 nc|ENSG00000205189|Q96DT7-4|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10;ENSG00000205189|ENST00000455036|ZBTB10 nc|ENSG00000205189|Q96DT7-4|ZBTB10 nc|ENSG00000205189|Q96DT7-4|ZBTB10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2684936523438 2 590.759475 1179.5044 0.44037 0.00026015 -0.23208 -0.0001371 0.20829 0.00012305 590.7593598128666 85.485 0.67873 81.82 81.501 82.18 -3.6641 43 18 3 0 0 0 0.68509 1 16707 16707 26.268 6.9062 1 5179500 32091 7632 21397 21412 31746 31746 -0.07817554737835053 NVDEGQIENY 10 Unmodified _NVDEGQIENY_ 0 0 0 nc|ENSG00000205189|Q96DT7-4|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10;ENSG00000205189|ENST00000455036|ZBTB10 nc|ENSG00000205189|Q96DT7-4|ZBTB10 nc|ENSG00000205189|Q96DT7-4|ZBTB10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2703247070312 2 590.759475 1179.5044 0.051499 3.0424E-05 0.12048 7.1173E-05 0.17198 0.0001016 590.7594656979276 85.539 0.61835 81.827 81.497 82.115 -3.7117 45 17 3 0 0 0 0.75233 1 16380 16380 29.082 1.4528 1 6244100 32092 7632 21397 21412 31747 31747 -0.07817554737835053 NVDEIDFRDG 10 Unmodified _NVDEIDFRDG_ 0 0 0 REV__nc|ENSG00000144285|P35498-3|SCN1A REV__nc|ENSG00000144285|P35498-3|SCN1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2599487304688 2 590.267467 1178.52038 NaN NaN NaN NaN NaN NaN NaN 162.08 1 156.89 156.39 157.39 -5.1878 0 0 0 2.8426 1 31465 31465 0.20733 0 1 + 32093 16775 21398 21413 31748 31748 -0.06173848500952772 NVDELILHIN 10 Unmodified _NVDELILHIN_ 0 0 0 REV__FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant REV__FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.271728515625 2 590.322045 1178.62954 NaN NaN NaN NaN NaN NaN NaN 162.31 1 162.31 161.81 162.81 0 0 0 0 0.22518 1 32627 32627 22.736 2.3217 1 + 32094 17758 21399 21414 31749 31749 0.047367821892066786 NVEAPGETF 9 Unmodified _NVEAPGETF_ 0 0 0 nc|ENSG00000255529|Q6EEV4-2|POLR2M;ENST00000380557.4_2_15:57998925-58001412:+|nuORF;ENST00000567643.1_1_15:57998925-57999700:+|nuORF;ENST00000299638.7_2_15:57998859-58000941:+|nuORF;nc|ENSG00000255529|Q6EEV4|POLR2M nc|ENSG00000255529|Q6EEV4-2|POLR2M nc|ENSG00000255529|Q6EEV4-2|POLR2M MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7745666503906 2 482.224539 962.434526 NaN NaN NaN NaN NaN NaN NaN 77.906 1 74.442 73.942 74.942 -3.4633 0 0 0 0.21844 1 15211 15211 18.146 1.2041 1 32095 8538 21400 21415 31750 31750 -0.04819388615794651 NVEAPPPS 8 Unmodified _NVEAPPPS_ 0 0 0 nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL nc|ENSG00000144677|O15194-2|CTDSPL nc|ENSG00000144677|O15194-2|CTDSPL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.30010986328125 2 405.703243 809.391933 0.074338 3.0159E-05 0.08154 3.3081E-05 0.15588 6.324E-05 405.7030923108999 61.079 0.52015 57.709 57.308 57.829 -3.3694 20 14 2 0 0 0 0.58432 1 11359 11359 23.148 9.6405 1 944660 32096 4569 21401 21416 31751 31751 -0.020387389533880196 NVEAPPPS 8 Unmodified _NVEAPPPS_ 0 0 0 nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL nc|ENSG00000144677|O15194-2|CTDSPL nc|ENSG00000144677|O15194-2|CTDSPL MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 405.703243 809.391933 -0.24752 -0.00010042 0.36468 0.00014795 0.11716 4.7533E-05 405.7032977882087 57.567 0.44844 57.567 57.376 57.825 0 -0.070164 2.2671E-05 NaN 23.148 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 737170 32097 4569 21401 21416 -0.020387389533880196 NVEAPPPS 8 Unmodified _NVEAPPPS_ 0 0 0 nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL nc|ENSG00000144677|O15194-2|CTDSPL nc|ENSG00000144677|O15194-2|CTDSPL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 405.703243 809.391933 -0.18529 -7.5173E-05 0.75959 0.00030817 0.5743 0.000233 405.70326906021023 60.568 0.51515 57.635 57.307 57.822 -2.9333 -0.0020564 0.00034311 NaN 23.148 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 869220 32098 4569 21401 21416 -0.020387389533880196 NVECRSGEFY 10 Unmodified _NVECRSGEFY_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2880859375 2 602.258588 1202.50262 NaN NaN NaN NaN NaN NaN NaN 35.75 1 35.75 35.25 36.25 0 0 0 0 2.8426 1 6571 6571 0.20733 0 1 + 32099 15726 21402 21417 31752 31752 -0.09052887027451106 NVEFAKGSK 9 Unmodified _NVEFAKGSK_ 0 0 0 nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10 nc|ENSG00000182872|P98175-4|RBM10 nc|ENSG00000182872|P98175-4|RBM10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2638244628906 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 165.24 1 160.45 159.95 160.95 -4.7898 0 0 0 0.19711 1 33077 33077 0.40827 0.28045 1 32100 6816 21403 21418 31753 31753 0.02332883409144415 NVERWQGQY 9 Unmodified _NVERWQGQY_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;LAMA5|p.P3242Rfs*47|1|0.41|ENSG00000130702|chr20:62311700-62311700|C/-|frameshift_variant;LAMA5|p.A3459Qfs*25|1|0.42|ENSG00000130702|chr20:62310736-62310736|C/-|frameshift_variant ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2610473632812 2 590.280712 1178.54687 NaN NaN NaN NaN NaN NaN NaN 76.074 1 72.351 71.851 72.851 -3.7227 0 0 0 0.23277 1 14398 14398 13.906 0 1 32101 3627 21404 21419 31754 31754 -0.035261148189420055 NVESIAEQME 10 Unmodified _NVESIAEQME_ 0 0 0 ENSG00000096717|ENST00000212015|SIRT1 ENSG00000096717|ENST00000212015|SIRT1 ENSG00000096717|ENST00000212015|SIRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3302612304688 2 575.258253 1148.50195 0.20112 0.00011569 0.69039 0.00039715 0.89151 0.00051285 575.2586199734329 132.41 1.6355 127.61 126.87 128.5 -4.799 150 46 5 0 0 0 0.74994 1 25596 25596 5.7319 0.43497 1 147510000 32102 1878 21405 21420 31755 31755 -0.06635726467152381 NVEVHKLWQ 9 Unmodified _NVEVHKLWQ_ 0 0 0 REV__nc|ENSG00000068078|P22607-3|FGFR3 REV__nc|ENSG00000068078|P22607-3|FGFR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3389282226562 2 576.811648 1151.60874 0.25916 0.00014948 -2.2719 -0.0013105 -2.0127 -0.001161 576.8106307407752 138.82 0.24861 133.98 133.86 134.11 -4.8492 10 6 2 0 0 0 0.77734 1 26757 26757 13.906 10.31 1 1815100 + 32103 14220 21406 21421 31756 31756 0.03900236600179596 NVEWRGRAP 9 Unmodified _NVEWRGRAP_ 0 0 0 REV__ENST00000555208.1_1_14:77795315-77795561:+|nuORF REV__ENST00000555208.1_1_14:77795315-77795561:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.775634765625 2 542.785964 1083.55738 0.20368 0.00011056 -1.1366 -0.00061693 -0.93292 -0.00050637 542.7852127795876 71.273 0.94194 71.273 70.8 71.742 0 84 26 5 0 0 0 0.5059 1 13830 13830 19.257 2.3147 1 40074000 + 32104 22981 21407 21422 31757 31757 0.018939126261329875 NVFAFFLSH 9 Unmodified _NVFAFFLSH_ 0 0 0 ENST00000415659.2_1_5:122364392-122364512:-|nuORF ENST00000415659.2_1_5:122364392-122364512:-|nuORF ENST00000415659.2_1_5:122364392-122364512:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2785034179688 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 61.893 1 58.524 58.024 59.024 -3.3694 0 0 0 0.22251 1 11545 11545 16.942 2.104 1 32105 9615 21408 21423 31758 31758 0.0022177765142714634 NVFLHLLPE 9 Unmodified _NVFLHLLPE_ 0 0 0 SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant;nc|ENSG00000165915|Q96H72-2|SLC39A13;ENSG00000165915|ENST00000362021|SLC39A13 SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant SLC39A13|p.Q301Vfs*38|1|0.53|ENSG00000165915|chr11:47414891-47414892|CA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2784423828125 2 541.305667 1080.59678 0.30307 0.00016406 -0.46492 -0.00025166 -0.16185 -8.7609E-05 541.3052774232584 131.88 1.2183 131.88 131.15 132.37 0 53 34 2 0 0 0 0.57447 1 25952 25952 14.838 4.7643 1 6548900 32106 5676 21409 21424 31759 31759 0.0597061985702112 NVFRECWK 8 Unmodified _NVFRECWK_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86707325-86709823:+|nuORF ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2740478515625 2 541.266019 1080.51748 NaN NaN NaN NaN NaN NaN NaN 142.7 1 137.81 137.31 138.31 -4.8982 0 0 0 0.23749 1 27537 27537 0.12286 0.049601 1 32107 2865 21410 21425 31760 31760 -0.019553503688030105 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3806762695312 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 134.4 1 134.4 133.9 134.9 0 0 0 0 0.22632 1 26606 26606 0 0 1 + 32108 23528 21411 21426 31761 31761 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3967895507812 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 140.53 1 140.53 140.03 141.03 0 0 0 0 0.22632 1 27983 27983 0 0 1 + 32109 23528 21411 21426 31762 31762 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3937377929688 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 166.96 1 166.96 166.46 167.46 0 0 0 0 0.23429 1 34077 34077 4.897 1.9018 1 + 32110 23528 21411 21426 31763 31763 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3963012695312 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 95.322 1 91.272 90.772 91.772 -4.0496 0 0 0 0.23698 1 18682 18682 1.3295 0.9789 1 + 32111 23528 21411 21426 31764 31764 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.399169921875 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 138.55 1 133.91 133.41 134.41 -4.6413 0 0 0 0.22632 1 27355 27355 0 0 1 + 32112 23528 21411 21426 31765 31765 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3945922851562 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 152.93 1 148.16 147.66 148.66 -4.7684 0 0 0 0.23698 1 30389 30389 1.3295 0.13619 1 + 32113 23528 21411 21426 31766 31766 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3975219726562 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 139.39 1 134.44 133.94 134.94 -4.952 0 0 0 0.22632 1 26815 26815 0 0 1 + 32114 23528 21411 21426 31767 31767 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3948364257812 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 140.84 1 135.86 135.36 136.36 -4.9877 0 0 0 0.22632 1 27112 27112 0.094841 0.068635 1 + 32115 23528 21411 21426 31768 31768 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3943481445312 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 146.3 1 141.19 140.69 141.69 -5.1108 0 0 0 0.22632 1 28293 28293 0 0 1 + 32116 23528 21411 21426 31769 31769 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.397216796875 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 151.29 1 146.06 145.56 146.56 -5.2365 0 0 0 0.22632 1 29326 29326 0.50596 0.50539 1 + 32117 23528 21411 21426 31770 31770 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3989868164062 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 87.347 1 83.618 83.118 84.118 -3.7289 0 0 0 0.23698 1 16710 16710 1.3295 0.13619 1 + 32118 23528 21411 21426 31771 31771 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3971557617188 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 138.69 1 133.84 133.34 134.34 -4.8492 0 0 0 0.22632 1 26732 26732 0 0 1 + 32119 23528 21411 21426 31772 31772 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3936767578125 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 140.41 1 135.54 135.04 136.04 -4.8678 0 0 0 0.22632 1 27075 27075 0 0 1 + 32120 23528 21411 21426 31773 31773 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3944702148438 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 141.25 1 136.38 135.88 136.88 -4.8678 0 0 0 0.22632 1 27257 27257 0 0 1 + 32121 23528 21411 21426 31774 31774 0.01664609611088963 NVFRRNYQMRW 11 Unmodified _NVFRRNYQMRW_ 0 0 0 REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant REV__FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3912963867188 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 144.69 1 139.74 139.24 140.24 -4.9445 0 0 0 0.22632 1 27955 27955 0 0 1 + 32122 23528 21411 21426 31775 31775 0.01664609611088963 NVFYAMNST 9 Unmodified _NVFYAMNST_ 0 0 0 RALGDS|p.N863S|1|0.2|ENSG00000160271|chr9:133098744-133098744|T/C|missense_variant;ENST00000493438.5_1_9:135973976-135976008:-|nuORF;nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS RALGDS|p.N863S|1|0.2|ENSG00000160271|chr9:133098744-133098744|T/C|missense_variant RALGDS|p.N863S|1|0.2|ENSG00000160271|chr9:133098744-133098744|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6945190429688 2 523.734217 1045.45388 NaN NaN NaN NaN NaN NaN NaN 153.25 1 153.25 152.75 153.75 0 0 0 0 0.19679 1 30702 30702 0.40827 0.2854 1 32123 5242 21412 21427 31776 31776 -0.06702755596552379 NVFYFVSIY 9 Unmodified _NVFYFVSIY_ 0 0 0 REV__ENST00000368468.3_1_6:119500260-119500521:-|nuORF REV__ENST00000368468.3_1_6:119500260-119500521:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3338012695312 2 576.292225 1150.5699 NaN NaN NaN NaN NaN NaN NaN 140.1 1 135.15 134.65 135.65 -4.952 0 0 0 0.23508 1 26959 26959 6.7232 0.51738 1 + 32124 20940 21413 21428 31777 31777 0.0006351124582124612 NVHCCLCH 8 Unmodified _NVHCCLCH_ 0 0 0 ENST00000584396.5_2_17:56058088-56059240:-|nuORF ENST00000584396.5_2_17:56058088-56059240:-|nuORF ENST00000584396.5_2_17:56058088-56059240:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1645812988281 3 310.124392 927.351347 NaN NaN NaN NaN NaN NaN NaN 5.0467 1 5.0467 4.5467 5.5467 0 0 0 0 0.2396 1 206 206 0 0 1 32125 11523 21414 21429 31778 31778 -0.11523443140674772 NVHCCLCH 8 Unmodified _NVHCCLCH_ 0 0 0 ENST00000584396.5_2_17:56058088-56059240:-|nuORF ENST00000584396.5_2_17:56058088-56059240:-|nuORF ENST00000584396.5_2_17:56058088-56059240:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1645812988281 3 310.124392 927.351347 NaN NaN NaN NaN NaN NaN NaN 5.0551 1 5.0551 4.5551 5.5551 0 0 0 0 0.21486 1 207 207 0 0 1 32126 11523 21414 21429 31779 31779 -0.11523443140674772 NVIKEAEA 8 Unmodified _NVIKEAEA_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298;ENST00000483315.1_1_21:33975401-33976611:-|nuORF ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22802734375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 64.35 1 64.35 63.85 64.85 0 0 0 0 0.21486 1 12387 12387 11.64 0.81637 1 32127 5186 21415 21430 31780 31780 0.019015056264720442 NVIKQHIQEA 10 Unmodified _NVIKQHIQEA_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2576293945312 2 590.327662 1178.64077 NaN NaN NaN NaN NaN NaN NaN 161.36 1 161.36 160.86 161.86 0 0 0 0 0.22588 1 32408 32408 9.3831 1.2276 1 32128 2571 21416 21431 31781 31781 0.05859604283364206 NVIRRPLRK 9 Unmodified _NVIRRPLRK_ 0 0 0 ENST00000393547.6_1_17:42786096-42786186:+|nuORF ENST00000393547.6_1_17:42786096-42786186:+|nuORF ENST00000393547.6_1_17:42786096-42786186:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3350219726562 2 576.377823 1150.74109 NaN NaN NaN NaN NaN NaN NaN 135.73 1 131.09 130.59 131.59 -4.6399 0 0 0 0.23508 1 26773 26773 2.0598 0.21551 1 32129 9395 21417 21432 31782 31782 0.17175306127637668 NVKPTLPPIPQ 11 Unmodified _NVKPTLPPIPQ_ 0 0 0 ENSG00000155530|ENST00000285928|LRGUK ENSG00000155530|ENST00000285928|LRGUK ENSG00000155530|ENST00000285928|LRGUK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2978515625 2 602.358431 1202.70231 NaN NaN NaN NaN NaN NaN NaN 165.5 1 160.55 160.05 161.05 -4.9484 0 0 0 0.22842 1 32344 32344 9.544 0.79857 1 32130 5049 21418 21433 31783 31783 0.1090653598262179 NVKSVNSGT 9 Unmodified _NVKSVNSGT_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.752685546875 2 453.237981 904.461409 0.25665 0.00011632 -0.25514 -0.00011564 0.0015092 6.8401E-07 453.23767732113083 22.37 0.27785 22.37 22.223 22.501 0 10 7 2 0 0 0 0.56053 1 3807 3807 1.2148 1.092 1 524520 32131 1583 21419 21434 31784 31784 0.005357199954005409 NVKSVNSGT 9 Unmodified _NVKSVNSGT_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.237981 904.461409 0.76915 0.00034861 -1.0024 -0.00045433 -0.23325 -0.00010572 453.23755762484836 23.834 0.23843 22.281 22.117 22.355 -1.5532 -0.031128 -0.00056645 NaN 1.2148 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 528230 32132 1583 21419 21434 0.005357199954005409 NVKSVNSGT 9 Unmodified _NVKSVNSGT_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 453.237981 904.461409 -0.080698 -3.6576E-05 0.23272 0.00010548 0.15202 6.8901E-05 453.2380537786023 23.738 0.2681 22.285 22.14 22.409 -1.4535 -0.027292 0.00055316 NaN 1.2148 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 513080 32133 1583 21419 21434 0.005357199954005409 NVLAILLIVLV 11 Unmodified _NVLAILLIVLV_ 0 0 0 ENSG00000135749|ENST00000258229|PCNX2;ENST00000519530.1_1_1:233353734-233362997:-|nuORF;nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF ENSG00000135749|ENST00000258229|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF ENSG00000135749|ENST00000258229|PCNX2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2576293945312 2 590.407392 1178.80023 NaN NaN NaN NaN NaN NaN NaN 161.33 1 161.33 160.83 161.83 0 0 0 0 0.22632 1 32404 32404 0.00056442 0 1 32134 3948;8727 21420 21435 31785 31785 0.2179834457861034 NVLIVNEPLA 10 Unmodified _NVLIVNEPLA_ 0 0 0 REV__ENSG00000175115|ENST00000320580|PACS1 REV__ENSG00000175115|ENST00000320580|PACS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.266845703125 2 541.316232 1080.61791 NaN NaN NaN NaN NaN NaN NaN 120.37 1 120.37 119.87 120.87 0 0 0 0 0.22588 1 23728 23728 13.042 2.2185 1 + 32135 18457 21421 21436 31786 31786 0.08082585165857381 NVLKLPKRL 9 Unmodified _NVLKLPKRL_ 0 0 0 ENST00000342992.10_3_2:179563626-179566308:-|nuORF ENST00000342992.10_3_2:179563626-179566308:-|nuORF ENST00000342992.10_3_2:179563626-179566308:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2742919921875 2 540.866226 1079.7179 0.22448 0.00012141 2.351 0.0012716 2.5754 0.001393 541.3692529915021 129.64 0.2108 125.01 124.88 125.09 -4.6292 11 5 3 0 0 0 0.65202 1 25559 25559 0.96228 0 1 1441500 32136 8873 21422 21437 31787 31787 0.18122867290321665 NVLLLLLKPK 10 Unmodified _NVLLLLLKPK_ 0 0 0 ENST00000462787.5_1_3:160146675-160146711:+|nuORF ENST00000462787.5_1_3:160146675-160146711:+|nuORF ENST00000462787.5_1_3:160146675-160146711:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3156127929688 2 575.899734 1149.78492 0.4051 0.00023329 0.3806 0.00021919 0.78569 0.00045248 575.8985245233798 154.97 0.21553 149.72 149.65 149.87 -5.2526 6 5 2 0 0 0 0.91149 1 30058 30058 1.4819 0 1 622670 32137 10090 21423 21438 31788 31788 0.21601477781428002 NVLLPLIIFH 10 Unmodified _NVLLPLIIFH_ 0 0 0 SLC9A9|p.P141L|1|0.21|ENSG00000181804|chr3:143796860-143796860|G/A|missense_variant SLC9A9|p.P141L|1|0.21|ENSG00000181804|chr3:143796860-143796860|G/A|missense_variant SLC9A9|p.P141L|1|0.21|ENSG00000181804|chr3:143796860-143796860|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.255859375 2 589.868434 1177.72232 NaN NaN NaN NaN NaN NaN NaN 169.58 1 164.65 164.15 165.15 -4.9295 0 0 0 2.8426 1 33491 33491 1.9275 1.0826 1 32138 25692 21424 21439 31789 31789 0.14056331713231884 NVLPFIFYIYH 11 Unmodified _NVLPFIFYIYH_ 0 0 0 REV__ANKRD12|p.D530Kfs*23|1|0.42|ENSG00000101745|chr18:9254849-9254850|-/AAGAT|frameshift_variant REV__ANKRD12|p.D530Kfs*23|1|0.42|ENSG00000101745|chr18:9254849-9254850|-/AAGAT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5589904785156 4 357.194591 1424.74926 -0.92361 -0.00032991 1.0321 0.00036866 0.1085 3.8757E-05 357.19490070341675 14.313 0.17404 13.199 13.123 13.297 -1.1142 6 4 2 0 0 0 0.96216 1 2157 2157 1.3296 0.55311 1 370180 + 32139 13054 21425 21440 31790 31790 0.05387395533762174 NVLPFIFYIYH 11 Unmodified _NVLPFIFYIYH_ 0 0 0 REV__ANKRD12|p.D530Kfs*23|1|0.42|ENSG00000101745|chr18:9254849-9254850|-/AAGAT|frameshift_variant REV__ANKRD12|p.D530Kfs*23|1|0.42|ENSG00000101745|chr18:9254849-9254850|-/AAGAT|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 357.194591 1424.74926 -0.38775 -0.0001385 0.88539 0.00031626 0.49764 0.00017776 357.1951278258489 13.45 0.13869 13.45 13.377 13.515 0 0.12531 -0.00016937 NaN 1.3296 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 131930 + 32140 13054 21425 21440 0.05387395533762174 NVLQATDL 8 Unmodified _NVLQATDL_ 0 0 0 ENST00000524197.1_1_6:72926891-72975792:+|nuORF;nc|ENSG00000079841|Q86UR5-10|RIMS1;nc|ENSG00000079841|Q86UR5-13|RIMS1;RIMS1|p.R824*|1|0.13|ENSG00000079841|chr6:72251013-72251014|-/T|frameshift_variant;nc|ENSG00000079841|Q86UR5-9|RIMS1;nc|ENSG00000079841|Q86UR5-12|RIMS1;nc|ENSG00000079841|Q86UR5-2|RIMS1;nc|ENSG00000079841|Q86UR5-8|RIMS1;nc|ENSG00000079841|Q86UR5-7|RIMS1;nc|ENSG00000079841|Q86UR5-6|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;ENSG00000079841|ENST00000521978|RIMS1 ENST00000524197.1_1_6:72926891-72975792:+|nuORF ENST00000524197.1_1_6:72926891-72975792:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21612548828125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 114.22 1 109.91 109.41 110.41 -4.3136 0 0 0 0.21486 1 22003 22003 9.3474 0 1 32141 10876 21426 21441 31791 31791 0.019015056264720442 NVLRILGLRP 10 Unmodified _NVLRILGLRP_ 0 0 0 ENSG00000182636|ENST00000649030|NDN ENSG00000182636|ENST00000649030|NDN ENSG00000182636|ENST00000649030|NDN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 575.8690795898438 2 575.874582 1149.73461 NaN NaN NaN NaN NaN NaN NaN 164.33 1 164.33 163.83 164.83 0 0 0 0 2.8426 1 33220 33220 0.0013812 0 1 32142 6802 21427 21442 31792 31792 0.16573368176273107 NVLVLLILAIA 11 Unmodified _NVLVLLILAIA_ 0 0 0 REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5 REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3328857421875 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 142.91 1 137.88 137.38 138.38 -5.0261 0 0 0 0.22632 1 27553 27553 0.0072825 0.0072825 1 + 32143 13967 21428 21443 31793 31793 0.19957771544522984 NVNFRKYC 8 Unmodified _NVNFRKYC_ 0 0 0 LRRK2|p.I435Yfs*9|1|0.39|ENSG00000188906|chr12:40257258-40257258|A/-|frameshift_variant LRRK2|p.I435Yfs*9|1|0.39|ENSG00000188906|chr12:40257258-40257258|A/-|frameshift_variant LRRK2|p.I435Yfs*9|1|0.39|ENSG00000188906|chr12:40257258-40257258|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2764282226562 2 522.258194 1042.50183 NaN NaN NaN NaN NaN NaN NaN 154.8 1 150.02 149.52 150.52 -4.7791 0 0 0 0.21486 1 30770 30770 4.756 2.0208 1 32144 12092 21429 21444 31794 31794 -0.017716368858373244 NVNYRGRT 8 Unmodified _NVNYRGRT_ 0 0 0 ENST00000424279.5_1_X:9685823-9685994:+|nuORF ENST00000424279.5_1_X:9685823-9685994:+|nuORF ENST00000424279.5_1_X:9685823-9685994:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2525329589844 2 490.25704 978.499526 0.14743 7.2278E-05 1.6792 0.00082326 1.8267 0.00089554 490.25830794704655 19.051 1.2407 19.051 18.687 19.928 0 83 35 4 0 0 0 0.71876 1 3072 3072 11.64 3.047 1 45589000 32145 9700 21430 21445 31795 31795 0.009416507007244945 NVPLLYNF 8 Unmodified _NVPLLYNF_ 0 0 0 REV__ENSG00000139324|ENST00000266712|TMTC3 REV__ENSG00000139324|ENST00000266712|TMTC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26629638671875 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 69.72 1 66.14 65.64 66.64 -3.5798 0 0 0 0.21323 1 13132 13132 14.582 2.9414 1 + 32146 16515 21431 21446 31796 31796 0.027349729028514957 NVPLVRRG 8 Unmodified _NVPLVRRG_ 0 0 0 REV__TRIM41|p.G497Vfs*70|1|0.49|ENSG00000146063|chr5:181234369-181234381|GGGGCTGGGCGGT/-|frameshift_variant REV__TRIM41|p.G497Vfs*70|1|0.49|ENSG00000146063|chr5:181234369-181234381|GGGGCTGGGCGGT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.19146728515625 3 304.190888 909.550834 NaN NaN NaN NaN NaN NaN NaN 126.53 1 121.91 121.41 122.41 -4.6172 0 0 0 0.23312 1 24948 24948 6.2058 1.3088 1 + 32147 25479 21432 21447 31797 31797 0.09244019465415931 NVPTPRIKII 10 Unmodified _NVPTPRIKII_ 0 0 0 DAPK1|p.K154T|1|0.26|ENSG00000196730|chr9:87639391-87639391|A/C|missense_variant DAPK1|p.K154T|1|0.26|ENSG00000196730|chr9:87639391-87639391|A/C|missense_variant DAPK1|p.K154T|1|0.26|ENSG00000196730|chr9:87639391-87639391|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3240356445312 2 575.868966 1149.72338 0.19939 0.00011482 4.3505 0.0025053 4.5499 0.0026201 576.3725730012931 144.09 0.44775 139.03 138.66 139.11 -5.0671 13 12 2 0 0 0 0.53264 1 27751 27751 0 0 1 3709000 32148 781 21433 21448 31798 31798 0.1545054608211558 NVQLPPLSQR 10 Unmodified _NVQLPPLSQR_ 0 0 0 PDE4B|p.L50V|1|0.39|ENSG00000184588|chr1:65918702-65918702|T/G|missense_variant PDE4B|p.L50V|1|0.39|ENSG00000184588|chr1:65918702-65918702|T/G|missense_variant PDE4B|p.L50V|1|0.39|ENSG00000184588|chr1:65918702-65918702|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3290405273438 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 17.176 1 17.176 16.676 17.676 0 0 0 0 0.22588 1 2707 2707 5.2969 1.7004 1 32149 12768 21434 21449 31799 31799 0.07655908145943613 NVQLTDAGTY 10 Unmodified _NVQLTDAGTY_ 0 0 0 nc|ENSG00000134258|Q7Z7D3-4|VTCN1;ENSG00000134258|ENST00000369458|VTCN1 nc|ENSG00000134258|Q7Z7D3-4|VTCN1 nc|ENSG00000134258|Q7Z7D3-4|VTCN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2646484375 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 122.82 1 122.82 122.32 123.32 0 0 0 0 0.22583 1 24207 24207 13.906 0.29118 1 32150 3839 21435 21450 31800 31800 -0.028280455242793323 NVQVLLEY 8 Unmodified _NVQVLLEY_ 0 0 0 nc|ENSG00000114416|P51114-3|FXR1;FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1;ENST00000476672.1_1_3:180675662-180688154:+|nuORF nc|ENSG00000114416|P51114-3|FXR1 nc|ENSG00000114416|P51114-3|FXR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2715148925781 2 489.26875 976.522947 0.1291 6.3164E-05 0.020512 1.0036E-05 0.14961 7.32E-05 489.2688246258822 135.75 0.77206 131.11 130.69 131.47 -4.6399 40 21 3 0 0 0 0.58432 1 26787 26787 23.148 5.0134 1 4692200 32151 2788 21436 21451 31801 31801 0.03374651694673503 NVQVWGPGKFI 11 Unmodified _NVQVWGPGKFI_ 0 0 0 REV__AGMO|p.G305Vfs*31|1|0.2|ENSG00000187546|chr7:15387449-15387449|C/-|frameshift_variant REV__AGMO|p.G305Vfs*31|1|0.2|ENSG00000187546|chr7:15387449-15387449|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7520751953125 2 622.842948 1243.67134 NaN NaN NaN NaN NaN NaN NaN 163.16 1 157.98 157.48 158.48 -5.1878 0 0 0 0.23018 1 31734 31734 8.1555 0.54658 1 + 32152 12981 21437 21452 31802 31802 0.059253826683971056 NVRETYHY 8 Unmodified _NVRETYHY_ 0 0 0 KCNJ9|p.R43H|1|0.31|ENSG00000162728|chr1:160084158-160084158|G/A|missense_variant KCNJ9|p.R43H|1|0.31|ENSG00000162728|chr1:160084158-160084158|G/A|missense_variant KCNJ9|p.R43H|1|0.31|ENSG00000162728|chr1:160084158-160084158|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2647705078125 2 541.256705 1080.49886 0.34769 0.00018819 -2.0132 -0.0010897 -1.6655 -0.00090147 541.756656774186 154.38 0.20984 149.61 149.5 149.71 -4.7684 6 5 2 0 0 0 8448 1 30691 30691 0.12286 0 1 923760 32153 11981 21438 21453 31803 31803 -0.03817188739003541 NVRETYHY 8 Unmodified _NVRETYHY_ 0 0 0 KCNJ9|p.R43H|1|0.31|ENSG00000162728|chr1:160084158-160084158|G/A|missense_variant KCNJ9|p.R43H|1|0.31|ENSG00000162728|chr1:160084158-160084158|G/A|missense_variant KCNJ9|p.R43H|1|0.31|ENSG00000162728|chr1:160084158-160084158|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2647094726562 2 541.256705 1080.49886 NaN NaN NaN NaN NaN NaN NaN 122.58 1 117.86 117.36 118.36 -4.7202 0 0 0 0.21486 1 23541 23541 9.3474 0.75416 1 32154 11981 21438 21453 31804 31804 -0.03817188739003541 NVRETYHY 8 Unmodified _NVRETYHY_ 0 0 0 KCNJ9|p.R43H|1|0.31|ENSG00000162728|chr1:160084158-160084158|G/A|missense_variant KCNJ9|p.R43H|1|0.31|ENSG00000162728|chr1:160084158-160084158|G/A|missense_variant KCNJ9|p.R43H|1|0.31|ENSG00000162728|chr1:160084158-160084158|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2588500976562 2 541.256705 1080.49886 NaN NaN NaN NaN NaN NaN NaN 122.22 1 117.69 117.19 118.19 -4.5305 0 0 0 0.21486 1 23528 23528 9.3474 0.60203 1 32155 11981 21438 21453 31805 31805 -0.03817188739003541 NVRFGFRNI 9 Unmodified _NVRFGFRNI_ 0 0 0 NRXN1|p.A895V|1|0.37|ENSG00000179915|chr2:50497528-50497528|G/A|missense_variant NRXN1|p.A895V|1|0.37|ENSG00000179915|chr2:50497528-50497528|G/A|missense_variant NRXN1|p.A895V|1|0.37|ENSG00000179915|chr2:50497528-50497528|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21063232421875 3 374.87708 1121.60941 -0.36307 -0.00013611 -1.1855 -0.0004444 -1.5485 -0.00058051 374.87666497324506 18.602 0.17798 17.277 17.187 17.365 -1.3251 7 4 2 0 0 0 0.59831 1 2799 2799 0.0033805 0.0019993 1 374800 32156 12710 21439 21454 31806 31806 0.053470760399022765 NVRGIHANV 9 Unmodified _NVRGIHANV_ 0 0 0 ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27288818359375 2 490.275232 978.535912 NaN NaN NaN NaN NaN NaN NaN 17.609 1 16.094 15.594 16.594 -1.5148 0 0 0 0.23508 1 2566 2566 7.9102 0 1 32157 1042 21440 21455 31807 31807 0.04578527597413995 NVSLGEKRY 9 Unmodified _NVSLGEKRY_ 0 0 0 REV__SETMAR|p.F116Lfs*58|1|0.35|ENSG00000170364|chr3:4313085-4313085|T/-|frameshift_variant REV__SETMAR|p.F116Lfs*58|1|0.35|ENSG00000170364|chr3:4313085-4313085|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2849731445312 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 138.42 1 138.42 137.92 138.92 0 0 0 0 0.23277 1 27483 27483 13.906 3.8321 1 + 32158 24607 21441 21456 31808 31808 0.03175957329199264 NVTAEDSEDED 11 Unmodified _NVTAEDSEDED_ 0 0 0 AGGF1|p.N681Tfs*29|4|0.3|ENSG00000164252|chr5:77063142-77063142|A/-|frameshift_variant;ENSG00000164252|ENST00000312916|AGGF1 AGGF1|p.N681Tfs*29|4|0.3|ENSG00000164252|chr5:77063142-77063142|A/-|frameshift_variant AGGF1|p.N681Tfs*29|4|0.3|ENSG00000164252|chr5:77063142-77063142|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 612.2805786132812 2 612.230944 1222.44734 NaN NaN NaN NaN NaN NaN NaN 168.79 1 168.79 168.29 169.29 0 0 0 0 0.22632 1 34601 34601 0.00056442 0 1 32159 95 21442 21457 31809 31809 -0.15499066804886752 NVTDGWIDY 9 Unmodified _NVTDGWIDY_ 0 0 0 REV__ADCY6|p.N1109D|1|0.11|ENSG00000174233|chr12:48768993-48768993|T/C|missense_variant REV__ADCY6|p.N1109D|1|0.11|ENSG00000174233|chr12:48768993-48768993|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.271484375 2 541.743096 1081.47164 -0.11447 -6.2015E-05 0.25697 0.00013921 0.1425 7.7197E-05 541.7431932233558 106.05 0.4544 101.79 101.62 102.08 -4.2638 15 12 2 0 0 0 0.74655 1 20851 20851 15.847 15.847 1 1278700 + 32160 12957 21443 21458 31810 31810 -0.06583717070043349 NVTFHHYPVF 10 Unmodified _NVTFHHYPVF_ 0 0 0 REV__ADCY10|p.I973V|1|0.09|ENSG00000143199|chr1:167845653-167845653|T/C|missense_variant REV__ADCY10|p.I973V|1|0.09|ENSG00000143199|chr1:167845653-167845653|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.750244140625 2 630.811648 1259.60874 0.40028 0.0002525 1.5536 0.00098 1.9538 0.0012325 630.8124842851464 21.726 0.41626 21.726 21.528 21.945 0 18 11 2 0 0 0 0.71778 1 3672 3672 9.3831 4.0862 1 1149000 + 32161 12953 21444 21459 31811 31811 -0.010677633998284364 NVTFQMEPTI 10 Unmodified _NVTFQMEPTI_ 0 0 0 DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant;DSEL|p.R969Kfs*4|1|0.26|ENSG00000171451|chr18:67511733-67511734|-/T|frameshift_variant;DSEL|p.R969Efs*16|1|0.36|ENSG00000171451|chr18:67511734-67511734|T/-|frameshift_variant;ENSG00000171451|ENST00000310045|DSEL DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant DSEL|p.L827Wfs*85|1|0.11|ENSG00000171451|chr18:67512159-67512159|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2679443359375 2 590.289356 1178.56416 NaN NaN NaN NaN NaN NaN NaN 160.9 1 156.1 155.6 156.6 -4.7952 0 0 0 2.8426 1 31996 31996 0.063865 0.060484 1 32162 895 21445 21460 31812 31812 -0.017979553281520566 NVTLVGATEY 10 Unmodified _NVTLVGATEY_ 0 0 0 REV__ENST00000449426.1_1_7:56356827-56358135:+|nuORF REV__ENST00000449426.1_1_7:56356827-56358135:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2810668945312 2 533.774396 1065.53424 0.31685 0.00016913 -0.7009 -0.00037412 -0.38405 -0.000205 533.7738368533912 106.94 0.38297 106.94 106.72 107.1 0 15 10 2 0 0 0 1.1127 1 21015 21015 8.7518 1.2747 1 2248600 + 32163 21788 21446 21461 31813 31813 0.004094289981367183 NVVDDIMKYYL 11 Unmodified _NVVDDIMKYYL_ 0 0 0 REV__tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1 REV__tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2341613769531 3 458.232089 1371.67444 NaN NaN NaN NaN NaN NaN NaN 29.946 1 29.946 29.446 30.446 0 0 0 0 0.22632 1 5370 5370 0.58532 0.41332 1 + 32164 24929 21447 21462 31814 31814 0.003468449402362239 NVVDDIMKYYL 11 Unmodified _NVVDDIMKYYL_ 0 0 0 REV__tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1 REV__tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22503662109375 3 458.232089 1371.67444 NaN NaN NaN NaN NaN NaN NaN 30.087 1 30.087 29.587 30.587 0 0 0 0 0.22632 1 5400 5400 0.172 0 1 + 32165 24929 21447 21462 31815 31815 0.003468449402362239 NVVKLIAALKN 11 Unmodified _NVVKLIAALKN_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;SYNE2|p.K1189Sfs*4|1|0.35|ENSG00000054654|chr14:64000642-64000642|A/-|frameshift_variant ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 591.6365356445312 2 591.882073 1181.74959 NaN NaN NaN NaN NaN NaN NaN 163.21 1 158.42 157.92 158.92 -4.7898 0 0 0 0.22632 1 32522 32522 0.58532 0.54153 1 32166 1266 21448 21463 31816 31816 0.16598815253610155 NVVLVRIILL 10 Unmodified _NVVLVRIILL_ 0 0 0 ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3179931640625 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 149.04 1 144.33 143.83 144.83 -4.7095 0 0 0 0.22588 1 29596 29596 1.6526 0.17072 1 32167 64 21449 21464 31817 31817 0.21080593638657774 NVVLVRIILL 10 Unmodified _NVVLVRIILL_ 0 0 0 ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3218383789062 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 128.26 1 123.44 122.94 123.94 -4.817 0 0 0 0.22588 1 24623 24623 1.4819 0 1 32168 64 21449 21464 31818 31818 0.21080593638657774 NVVLVRIILL 10 Unmodified _NVVLVRIILL_ 0 0 0 ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3341674804688 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 150.13 1 144.93 144.43 145.43 -5.1994 0 0 0 0.22588 1 29088 29088 1.4819 0 1 32169 64 21449 21464 31819 31819 0.21080593638657774 NVVLVRIILL 10 Unmodified _NVVLVRIILL_ 0 0 0 ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3168334960938 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 136.14 1 131.31 130.81 131.81 -4.8307 0 0 0 0.22588 1 26212 26212 1.6526 1.1279 1 32170 64 21449 21464 31820 31820 0.21080593638657774 NVVMSVPLPVP 11 Unmodified _NVVMSVPLPVP_ 0 0 0 ENSG00000198265|ENST00000358691|HELZ ENSG00000198265|ENST00000358691|HELZ ENSG00000198265|ENST00000358691|HELZ MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3267211914062 2 576.328285 1150.64202 NaN NaN NaN NaN NaN NaN NaN 123.56 1 118.99 118.49 119.49 -4.5757 0 0 0 0.22943 1 24357 24357 8.7454 1.1365 1 32171 7439 21450 21465 31821 31821 0.07272102327874563 NVVQYPEL 8 Unmodified _NVVQYPEL_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000485325.1_1_2:112560984-112579093:-|nuORF;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23858642578125 2 481.2531 960.491647 -0.15687 -7.5492E-05 0.28137 0.00013541 0.1245 5.9918E-05 481.2532178760344 109.54 0.66756 105.09 104.71 105.38 -4.4518 30 18 2 0 0 0 8448 1 21072 21072 3.5871 1.8448 1 1373100 32172 4957 21451 21466 31822 31822 0.00982078660570096 NVVRKQGIR 9 Unmodified _NVVRKQGIR_ 0 0 0 REV__nc|ENSG00000095564|O14981-2|BTAF1 REV__nc|ENSG00000095564|O14981-2|BTAF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.55999755859375 3 357.22448 1068.65161 -0.6334 -0.00022626 0.71728 0.00025623 0.083886 2.9966E-05 357.2246960300466 14.482 0.24689 13.309 13.142 13.389 -1.173 10 6 2 0 0 0 0.88211 1 1937 1937 2.9952 1.9238 1 265400 + 32173 14611 21452 21467 31823 31823 0.12003051448255064 NVVSYAGFPLN 11 Unmodified _NVVSYAGFPLN_ 0 0 0 REV__ENST00000602954.1_1_14:51129712-51129826:-|nuORF REV__ENST00000602954.1_1_14:51129712-51129826:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2504272460938 2 590.803488 1179.59242 0.092661 5.4744E-05 -2.0243 -0.001196 -1.9317 -0.0011412 590.8029670797907 19.303 0.52153 17.978 17.79 18.312 -1.3251 20 14 3 0 0 0 0.96058 1 2950 2950 7.609 1.4032 1 1876900 + 32174 23433 21453 21468 31824 31824 0.00981110643442662 NVVSYAGFPLN 11 Unmodified _NVVSYAGFPLN_ 0 0 0 REV__ENST00000602954.1_1_14:51129712-51129826:-|nuORF REV__ENST00000602954.1_1_14:51129712-51129826:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2616577148438 2 590.803488 1179.59242 -0.96622 -0.00057085 -0.95806 -0.00056603 -1.9243 -0.0011369 590.8032666248013 19.649 0.38301 18.014 17.878 18.261 -1.6351 14 10 2 0 0 0 0.96058 1 2970 2970 7.609 4.0125 1 649900 + 32175 23433 21453 21468 31825 31825 0.00981110643442662 NVWLGVEKP 9 Unmodified _NVWLGVEKP_ 0 0 0 REV__nc|ENSG00000143248|O15539-3|RGS5 REV__nc|ENSG00000143248|O15539-3|RGS5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2826538085938 2 521.290017 1040.56548 -0.017135 -8.9325E-06 -0.0024253 -1.2643E-06 -0.019561 -1.0197E-05 521.2899722764733 50.779 1.2788 47.727 47.064 48.343 -3.0517 86 36 3 0 0 0 0.54076 1 9372 9372 17.113 1.2657 1 6463300 + 32176 24081 21454 21469 31826 31826 0.0468204682290434 NVWRDEDVF 9 Unmodified _NVWRDEDVF_ 0 0 0 REV__ENSG00000178502|ENST00000319121|KLHL11 REV__ENSG00000178502|ENST00000319121|KLHL11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.27490234375 2 590.275095 1178.53564 NaN NaN NaN NaN NaN NaN NaN 139.73 1 134.78 134.28 135.28 -4.952 0 0 0 0.23508 1 26880 26880 5.2307 0.90143 1 + 32177 18608 21455 21470 31827 31827 -0.04648936913099533 NVYEETQELAI 11 Unmodified _NVYEETQELAI_ 0 0 0 REV__ENST00000507449.1_1_4:147104154-147108616:+|nuORF REV__ENST00000507449.1_1_4:147104154-147108616:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2298583984375 3 436.882114 1307.62451 NaN NaN NaN NaN NaN NaN NaN 56.045 1 52.855 52.355 53.355 -3.1895 0 0 0 0.22503 1 10376 10376 12.228 1.3286 1 + 32178 17655 21456 21471 31828 31828 -0.016995664640717223 NVYLWTIWIIY 11 Unmodified _NVYLWTIWIIY_ 0 0 0 REV__ENST00000265070.6_1_5:32143924-32143963:-|nuORF REV__ENST00000265070.6_1_5:32143924-32143963:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.4017333984375 2 742.402838 1482.79112 NaN NaN NaN NaN NaN NaN NaN 78.48 1 78.48 77.98 78.98 0 0 0 0 0.23634 1 15274 15274 3.2813 0.28607 1 + 32179 20239 21457 21472 31829 31829 0.06903951222284377 NVYLWTIWIIY 11 Unmodified _NVYLWTIWIIY_ 0 0 0 REV__ENST00000265070.6_1_5:32143924-32143963:-|nuORF REV__ENST00000265070.6_1_5:32143924-32143963:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.4011840820312 2 742.402838 1482.79112 NaN NaN NaN NaN NaN NaN NaN 93.096 1 93.096 92.596 93.596 0 0 0 0 0.23379 1 18208 18208 5.2969 3.815 1 + 32180 20239 21457 21472 31830 31830 0.06903951222284377 NVYLWTIWIIY 11 Unmodified _NVYLWTIWIIY_ 0 0 0 REV__ENST00000265070.6_1_5:32143924-32143963:-|nuORF REV__ENST00000265070.6_1_5:32143924-32143963:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.4039916992188 2 742.402838 1482.79112 NaN NaN NaN NaN NaN NaN NaN 85.857 1 82.138 81.638 82.638 -3.7184 0 0 0 0.23264 1 16785 16785 6.2058 3.2105 1 + 32181 20239 21457 21472 31831 31831 0.06903951222284377 NVYTSTCAC 9 Unmodified _NVYTSTCAC_ 0 0 0 REV__ENSG00000197125|ENST00000642064|OR8B8 REV__ENSG00000197125|ENST00000642064|OR8B8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 321.1311950683594 3 321.129977 960.368103 NaN NaN NaN NaN NaN NaN NaN 4.6212 1 3.5813 3.0813 4.0813 -1.04 0 0 0 0.23508 1 125 125 0.26902 0 1 + 32182 19308 21458 21473 31832 31832 -0.11366663773719665 NWGIKHRRG 9 Unmodified _NWGIKHRRG_ 0 0 0 REV__ENST00000554295.1_1_12:98849015-98849897:-|nuORF REV__ENST00000554295.1_1_12:98849015-98849897:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.212646484375 3 375.212574 1122.61589 NaN NaN NaN NaN NaN NaN NaN 93.307 1 89.164 88.664 89.664 -4.1435 0 0 0 0.19636 1 17784 17784 2.4985 0 1 + 32183 14195 21459 21474 31833 31833 0.05949013991244101 NWIERKYYYRM 11 Unmodified _NWIERKYYYRM_ 0 0 0 REV__ELF3|p.L342Wfs*105|1|0.47|ENSG00000163435|chr1:202015230-202015230|C/-|frameshift_variant REV__ELF3|p.L342Wfs*105|1|0.47|ENSG00000163435|chr1:202015230-202015230|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2735595703125 3 541.269649 1620.78712 NaN NaN NaN NaN NaN NaN NaN 130.01 1 130.01 129.51 130.51 0 0 0 0 0.22632 1 25687 25687 0.094841 0.094277 1 + 32184 13800 21460 21475 31834 31834 0.0015553845692011237 NWIERKYYYRM 11 Unmodified _NWIERKYYYRM_ 0 0 0 REV__ELF3|p.L342Wfs*105|1|0.47|ENSG00000163435|chr1:202015230-202015230|C/-|frameshift_variant REV__ELF3|p.L342Wfs*105|1|0.47|ENSG00000163435|chr1:202015230-202015230|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.269287109375 3 541.269649 1620.78712 NaN NaN NaN NaN NaN NaN NaN 14.566 1 13.452 12.952 13.952 -1.1142 0 0 0 0.22632 1 2192 2192 0 0 1 + 32185 13800 21460 21475 31835 31835 0.0015553845692011237 NWIERKYYYRM 11 Unmodified _NWIERKYYYRM_ 0 0 0 REV__ELF3|p.L342Wfs*105|1|0.47|ENSG00000163435|chr1:202015230-202015230|C/-|frameshift_variant REV__ELF3|p.L342Wfs*105|1|0.47|ENSG00000163435|chr1:202015230-202015230|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2686767578125 3 541.269649 1620.78712 NaN NaN NaN NaN NaN NaN NaN 94.642 1 90.761 90.261 91.261 -3.881 0 0 0 0.22632 1 18160 18160 0.50596 0.47975 1 + 32186 13800 21460 21475 31836 31836 0.0015553845692011237 NWIERKYYYRM 11 Unmodified _NWIERKYYYRM_ 0 0 0 REV__ELF3|p.L342Wfs*105|1|0.47|ENSG00000163435|chr1:202015230-202015230|C/-|frameshift_variant REV__ELF3|p.L342Wfs*105|1|0.47|ENSG00000163435|chr1:202015230-202015230|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2687377929688 3 541.269649 1620.78712 NaN NaN NaN NaN NaN NaN NaN 94.848 1 90.967 90.467 91.467 -3.881 0 0 0 0.22632 1 18200 18200 0.50596 0.47455 1 + 32187 13800 21460 21475 31837 31837 0.0015553845692011237 NWIERKYYYRM 11 Unmodified _NWIERKYYYRM_ 0 0 0 REV__ELF3|p.L342Wfs*105|1|0.47|ENSG00000163435|chr1:202015230-202015230|C/-|frameshift_variant REV__ELF3|p.L342Wfs*105|1|0.47|ENSG00000163435|chr1:202015230-202015230|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3809814453125 2 811.400835 1620.78712 NaN NaN NaN NaN NaN NaN NaN 139.15 1 134.3 133.8 134.8 -4.8492 0 0 0 0.22632 1 26824 26824 0 0 1 + 32188 13800 21460 21475 31838 31838 0.0015553845692011237 NWIPVGSF 8 Unmodified _NWIPVGSF_ 0 0 0 REV__ENST00000539851.5_1_11:64052369-64052471:+|nuORF REV__ENST00000539851.5_1_11:64052369-64052471:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2388610839844 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 38.487 1 36.045 35.545 36.545 -2.4419 0 0 0 0.23899 1 6851 6851 1.3295 1.3295 1 + 32189 22850 21461 21476 31839 31839 -0.002538693027076988 NWIWRFYFE 9 Unmodified _NWIWRFYFE_ 0 0 0 ENSG00000136240|ENST00000258739|KDELR2 ENSG00000136240|ENST00000258739|KDELR2 ENSG00000136240|ENST00000258739|KDELR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 680.71875 2 680.827298 1359.64004 NaN NaN NaN NaN NaN NaN NaN 9.968 1 9.1738 8.6738 9.6738 -0.79424 0 0 0 0.19626 1 1201 1201 0.0033805 0.0019993 1 32190 3995 21462 21477 31840 31840 -0.02539190365723698 NWLAARNA 8 Unmodified _NWLAARNA_ 0 0 0 ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-6|MIA2;nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2 ENSG00000150527|ENST00000640607|MIA2 ENSG00000150527|ENST00000640607|MIA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23004150390625 2 458.243401 914.472249 NaN NaN NaN NaN NaN NaN NaN 19.32 1 17.924 17.424 18.424 -1.3966 0 0 0 0.23312 1 3181 3181 6.2058 0 1 32191 4827 21463 21478 31841 31841 0.011591671603127907 NWLLGHLGMY 10 Unmodified _NWLLGHLGMY_ 0 0 0 ENSG00000171954|ENST00000269703|CYP4F22 ENSG00000171954|ENST00000269703|CYP4F22 ENSG00000171954|ENST00000269703|CYP4F22 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2841186523438 2 602.302601 1202.59065 NaN NaN NaN NaN NaN NaN NaN 146.08 1 146.08 145.58 146.58 0 0 0 0 2.8426 1 29204 29204 1.9275 0 1 32192 6187 21464 21479 31842 31842 -0.0025422164615065412 NWRSYRDWPWR 11 Unmodified _NWRSYRDWPWR_ 0 0 0 ENST00000253329.2_1_6:149862180-149862721:-|nuORF ENST00000253329.2_1_6:149862180-149862721:-|nuORF ENST00000253329.2_1_6:149862180-149862721:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.351806640625 2 811.39219 1620.76983 NaN NaN NaN NaN NaN NaN NaN 22.151 1 22.151 21.651 22.651 0 0 0 0 0.23698 1 3736 3736 1.0715 0.72083 1 32193 8239 21465 21480 31843 31843 -0.015726210339153113 NWRSYRDWPWR 11 Unmodified _NWRSYRDWPWR_ 0 0 0 ENST00000253329.2_1_6:149862180-149862721:-|nuORF ENST00000253329.2_1_6:149862180-149862721:-|nuORF ENST00000253329.2_1_6:149862180-149862721:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2737426757812 3 541.263886 1620.76983 NaN NaN NaN NaN NaN NaN NaN 118.39 1 118.39 117.89 118.89 0 0 0 0 0.22632 1 23318 23318 0.50596 0 1 32194 8239 21465 21480 31844 31844 -0.015726210339153113 NWRSYRDWPWR 11 Unmodified _NWRSYRDWPWR_ 0 0 0 ENST00000253329.2_1_6:149862180-149862721:-|nuORF ENST00000253329.2_1_6:149862180-149862721:-|nuORF ENST00000253329.2_1_6:149862180-149862721:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.265625 3 541.263886 1620.76983 NaN NaN NaN NaN NaN NaN NaN 86.625 1 82.898 82.398 83.398 -3.727 0 0 0 0.22632 1 16935 16935 0.2986 0 1 32195 8239 21465 21480 31845 31845 -0.015726210339153113 NWRSYRDWPWR 11 Unmodified _NWRSYRDWPWR_ 0 0 0 ENST00000253329.2_1_6:149862180-149862721:-|nuORF ENST00000253329.2_1_6:149862180-149862721:-|nuORF ENST00000253329.2_1_6:149862180-149862721:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2635498046875 3 541.263886 1620.76983 NaN NaN NaN NaN NaN NaN NaN 86.689 1 82.96 82.46 83.46 -3.7289 0 0 0 0.22632 1 16579 16579 0.2986 0 1 32196 8239 21465 21480 31846 31846 -0.015726210339153113 NWSSPLLV 8 Unmodified _NWSSPLLV_ 0 0 0 ENST00000265729.6_1_7:87835648-87835780:-|nuORF ENST00000265729.6_1_7:87835648-87835780:-|nuORF ENST00000265729.6_1_7:87835648-87835780:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2330627441406 2 458.25036 914.486168 0.25167 0.00011533 0.93353 0.00042779 1.1852 0.00054312 458.251827323674 123.3 0.67097 123.3 122.85 123.52 0 39 18 3 0 0 0 8448 1 24221 24221 6.2058 5.8988 1 1893000 32197 8364 21466 21481 31847 31847 0.025503998687668172 NWSSSFILLQL 11 Unmodified _NWSSSFILLQL_ 0 0 0 ENST00000465568.5_1_2:218899880-218933917:+|nuORF ENST00000465568.5_1_2:218899880-218933917:+|nuORF ENST00000465568.5_1_2:218899880-218933917:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23529052734375 3 436.571322 1306.69214 -0.022659 -9.8922E-06 -0.054228 -2.3674E-05 -0.076886 -3.3566E-05 436.5712099637186 70.57 0.52504 70.57 70.275 70.8 0 31 14 3 0 0 0 0.806 1 13633 13633 2.8433 0.4085 1 3680500 32198 10122 21467 21482 31848 31848 0.05105928257398773 NWSSSFILLQL 11 Unmodified _NWSSSFILLQL_ 0 0 0 ENST00000465568.5_1_2:218899880-218933917:+|nuORF ENST00000465568.5_1_2:218899880-218933917:+|nuORF ENST00000465568.5_1_2:218899880-218933917:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 436.571322 1306.69214 -0.022659 -9.8922E-06 -0.054228 -2.3674E-05 -0.076886 -3.3566E-05 436.5712099637186 70.57 0.52504 70.57 70.275 70.8 0 -0.012717 3.4926E-05 NaN 2.8433 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3680500 32199 10122 21467 21482 0.05105928257398773 NWSSSFILLQL 11 Unmodified _NWSSSFILLQL_ 0 0 0 ENST00000465568.5_1_2:218899880-218933917:+|nuORF ENST00000465568.5_1_2:218899880-218933917:+|nuORF ENST00000465568.5_1_2:218899880-218933917:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 436.571322 1306.69214 -0.22259 -9.7176E-05 0.13372 5.838E-05 -0.088865 -3.8796E-05 436.5713503609833 73.975 0.61707 70.611 70.299 70.917 -3.3643 0.027609 0.00028109 NaN 2.8433 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4637000 32200 10122 21467 21482 0.05105928257398773 NWSSSFILLQL 11 Unmodified _NWSSSFILLQL_ 0 0 0 ENST00000465568.5_1_2:218899880-218933917:+|nuORF ENST00000465568.5_1_2:218899880-218933917:+|nuORF ENST00000465568.5_1_2:218899880-218933917:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 436.571322 1306.69214 0.1509 6.588E-05 -0.28328 -0.00012367 -0.13238 -5.7793E-05 436.57120281840105 74.245 0.5194 70.568 70.347 70.866 -3.6764 -0.014892 -0.00026507 NaN 2.8433 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3783300 32201 10122 21467 21482 0.05105928257398773 NWTHCRQLGS 10 Unmodified _NWTHCRQLGS_ 0 0 0 REV__ENST00000304987.3_1_11:111595467-111595587:+|nuORF REV__ENST00000304987.3_1_11:111595467-111595587:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2774658203125 2 601.280189 1200.54582 0.33211 0.00019969 -0.32248 -0.0001939 0.0096385 5.7954E-06 601.2802793642081 12.826 0.20503 11.816 11.695 11.9 -1.0098 10 5 3 0 0 0 0.75777 1 1810 1810 3.2813 0 1 2405700 + 32202 20429 21468 21483 31849 31849 -0.046426524595290175 NWTHCRQLGS 10 Unmodified _NWTHCRQLGS_ 0 0 0 REV__ENST00000304987.3_1_11:111595467-111595587:+|nuORF REV__ENST00000304987.3_1_11:111595467-111595587:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 601.280189 1200.54582 0.33211 0.00019969 -0.32248 -0.0001939 0.0096385 5.7954E-06 601.2802793642081 12.826 0.20503 11.816 11.695 11.9 -1.0098 0.03091 -0.00079214 NaN 3.2813 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 2405700 + 32203 20429 21468 21483 -0.046426524595290175 NWTHCRQLGS 10 Unmodified _NWTHCRQLGS_ 0 0 0 REV__ENST00000304987.3_1_11:111595467-111595587:+|nuORF REV__ENST00000304987.3_1_11:111595467-111595587:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 601.280189 1200.54582 -0.31952 -0.00019212 0.67602 0.00040648 0.3565 0.00021436 601.2808422449392 12.884 0.21113 11.754 11.664 11.876 -1.1293 -0.03091 0.00040861 NaN 3.2813 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 556930 + 32204 20429 21468 21483 -0.046426524595290175 NWTYKRNPRSF 11 Unmodified _NWTYKRNPRSF_ 0 0 0 REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2626037597656 3 490.252987 1467.73713 NaN NaN NaN NaN NaN NaN NaN 105.91 1 101.53 101.03 102.03 -4.3764 0 0 0 0.22632 1 20308 20308 3.0723 0.34026 1 + 32205 12980 21469 21484 31850 31850 0.02197171843272372 NWYKRMRRLKF 11 Unmodified _NWYKRMRRLKF_ 0 0 0 REV__ENST00000480568.1_1:147594391-147596156:-|nuORF REV__ENST00000480568.1_1:147594391-147596156:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2723388671875 3 533.301395 1596.88236 NaN NaN NaN NaN NaN NaN NaN 129.75 1 124.92 124.42 125.42 -4.8355 0 0 0 0.22632 1 24912 24912 0.026206 0 1 + 32206 22166 21470 21485 31851 31851 0.10778936438600795 NYATIRVEI 9 Unmodified _NYATIRVEI_ 0 0 0 REV__ENSG00000226761|ENST00000533467|TAS2R46 REV__ENSG00000226761|ENST00000533467|TAS2R46 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 75.742 1 72.108 71.608 72.608 -3.6337 0 0 0 0.23508 1 14403 14403 4.5289 0.58447 1 + 32207 19728 21471 21486 31852 31852 0.0461712798901317 NYCHGSSVP 9 Unmodified _NYCHGSSVP_ 0 0 0 REV__ENSG00000235268|ENST00000450979|KDM4E REV__ENSG00000235268|ENST00000450979|KDM4E MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7703552246094 2 482.203084 962.391615 NaN NaN NaN NaN NaN NaN NaN 71.901 1 68.59 68.09 69.09 -3.3107 0 0 0 0.19652 1 14007 14007 0.40827 0.39999 1 + 32208 19762 21472 21487 31853 31853 -0.09108481944872437 NYFPHKYI 8 Unmodified _NYFPHKYI_ 0 0 0 REV__nc|ENSG00000178297|Q7Z410|TMPRSS9 REV__nc|ENSG00000178297|Q7Z410|TMPRSS9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27783203125 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 144.85 1 144.85 144.35 145.35 0 0 0 0 0.20568 1 28944 28944 20.871 3.9289 1 + 32209 18599 21473 21488 31854 31854 0.0022177765142714634 NYFSKLWLLYH 11 Unmodified _NYFSKLWLLYH_ 0 0 0 PCIF1|p.R452H|1|0.39|ENSG00000100982|chr20:45946042-45946042|G/A|missense_variant PCIF1|p.R452H|1|0.39|ENSG00000100982|chr20:45946042-45946042|G/A|missense_variant PCIF1|p.R452H|1|0.39|ENSG00000100982|chr20:45946042-45946042|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.386962890625 2 742.390262 1482.76597 NaN NaN NaN NaN NaN NaN NaN 159.66 1 159.66 159.16 160.16 0 0 0 0 0.23634 1 32059 32059 3.2813 0.28607 1 32210 12760 21474 21489 31855 31855 0.043898964197296664 NYHQKAPAR 9 Unmodified _NYHQKAPAR_ 0 0 0 nc|ENSG00000165511|Q5T742|ZNF22-AS1 nc|ENSG00000165511|Q5T742|ZNF22-AS1 nc|ENSG00000165511|Q5T742|ZNF22-AS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7883911132812 2 542.785964 1083.55738 0.17952 9.7443E-05 -1.0857 -0.00058931 -0.9062 -0.00049187 542.7851323107828 74.84 0.96928 71.163 70.656 71.626 -3.6764 111 27 6 0 0 0 0.54354 2 14181 14181;14191 16.942 2.104 1 23902000 32211 12433 21475 21490 31856;31857 31856 0.018939126261329875 NYIRKTEY 8 Unmodified _NYIRKTEY_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7818603515625 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 72.448 1 69.137 68.637 69.637 -3.3107 0 0 0 0.23025 1 14119 14119 0.62683 0.49901 1 32212 2427 21476 21491 31858 31858 0.01120554954900399 NYLKEQEEEPT 11 Unmodified _NYLKEQEEEPT_ 0 0 0 REV__KDM2A|p.R137Q|1|0.39|ENSG00000173120|chr11:67207612-67207612|G/A|missense_variant REV__KDM2A|p.R137Q|1|0.39|ENSG00000173120|chr11:67207612-67207612|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5367431640625 3 460.549023 1378.62524 0.072886 3.3568E-05 -0.45796 -0.00021091 -0.38507 -0.00017735 460.54877595291833 36.517 0.68841 34.169 33.828 34.516 -2.3479 57 19 4 0 0 0 0.63394 1 6415 6415 0.03141 0 1 4378100 + 32213 23708 21477 21492 31859 31859 -0.04892771815048036 NYPFCVDCY 9 Unmodified _NYPFCVDCY_ 0 0 0 FHL5|p.D206N|1|0.33|ENSG00000112214|chr6:96610683-96610683|G/A|missense_variant FHL5|p.D206N|1|0.33|ENSG00000112214|chr6:96610683-96610683|G/A|missense_variant FHL5|p.D206N|1|0.33|ENSG00000112214|chr6:96610683-96610683|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2213134765625 3 375.145627 1122.41505 NaN NaN NaN NaN NaN NaN NaN 66.507 1 63.451 62.951 63.951 -3.0558 0 0 0 0.23508 1 12889 12889 2.7352 0.82882 1 32214 11816 21478 21493 31860 31860 -0.1412580422256724 NYRLSMTIP 9 Unmodified _NYRLSMTIP_ 0 0 0 nc|ENSG00000143494|Q86V25-2|VASH2;nc|ENSG00000143494|Q86V25-5|VASH2;ENSG00000143494|ENST00000517399|VASH2;ENST00000271776.4_1_1:213124028-213139666:+|nuORF;nc|ENSG00000143494|Q86V25-4|VASH2 nc|ENSG00000143494|Q86V25-2|VASH2 nc|ENSG00000143494|Q86V25-2|VASH2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78564453125 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 157.72 1 152.93 152.43 153.43 -4.7885 0 0 0 0.19665 1 31368 31368 0.87518 0 1 32215 4496 21479 21494 31861 31861 0.015977855998926316 NYRRREHRRRV 11 Unmodified _NYRRREHRRRV_ 0 0 0 REV__sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 REV__sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2684326171875 3 533.305078 1596.89341 NaN NaN NaN NaN NaN NaN NaN 133.02 1 128.22 127.72 128.72 -4.799 0 0 0 0.22632 1 25602 25602 0.094841 0 1 + 32216 24710 21480 21495 31862 31862 0.11883474857086185 NYRYYGCWWYR 11 Unmodified _NYRYYGCWWYR_ 0 0 0 REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3572998046875 2 815.356428 1628.6983 NaN NaN NaN NaN NaN NaN NaN 140.46 1 140.46 139.96 140.96 0 0 0 0 0.22632 1 27966 27966 0.094841 0.087559 1 + 32217 23430 21481 21496 31863 31863 -0.09089876782763895 NYRYYGCWWYR 11 Unmodified _NYRYYGCWWYR_ 0 0 0 REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3560180664062 2 815.356428 1628.6983 NaN NaN NaN NaN NaN NaN NaN 155.02 1 150.24 149.74 150.74 -4.7791 0 0 0 0.22632 1 30820 30820 0.094841 0.087559 1 + 32218 23430 21481 21496 31864 31864 -0.09089876782763895 NYRYYGCWWYR 11 Unmodified _NYRYYGCWWYR_ 0 0 0 REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3597412109375 2 815.356428 1628.6983 NaN NaN NaN NaN NaN NaN NaN 137.81 1 132.89 132.39 133.39 -4.9216 0 0 0 0.22632 1 26497 26497 0.094841 0.087559 1 + 32219 23430 21481 21496 31865 31865 -0.09089876782763895 NYRYYGCWWYR 11 Unmodified _NYRYYGCWWYR_ 0 0 0 REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.356201171875 2 815.356428 1628.6983 NaN NaN NaN NaN NaN NaN NaN 146.72 1 141.61 141.11 142.11 -5.1108 0 0 0 0.22632 1 28380 28380 0.094841 0.087559 1 + 32220 23430 21481 21496 31866 31866 -0.09089876782763895 NYSFAYLDEYK 11 Unmodified _NYSFAYLDEYK_ 0 0 0 REV__nc|ENSG00000139505|Q9Y217-2|MTMR6 REV__nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 708.3265991210938 2 706.822075 1411.6296 0.97394 0.0006884 0.016823 1.1891E-05 0.99077 0.0007003 706.821985491628 167.95 0.31505 163.16 163.04 163.35 -4.7898 25 8 4 0 0 0 0.43939 1 33915 33915 0.58532 0 1 311210000 + 32221 16521 21482 21497 31867 31867 -0.05975262601486975 NYSSNAYHMSS 11 Unmodified _NYSSNAYHMSS_ 0 0 0 ENSG00000135951|ENST00000393483|TSGA10 ENSG00000135951|ENST00000393483|TSGA10 ENSG00000135951|ENST00000393483|TSGA10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7728271484375 2 630.751127 1259.4877 NaN NaN NaN NaN NaN NaN NaN 145.53 1 140.59 140.09 141.09 -4.9445 0 0 0 0.23379 1 28140 28140 5.2969 0.54088 1 32222 3969 21483 21498 31868 31868 -0.1316637889544836 NYTALGCQQY 10 Unmodified _NYTALGCQQY_ 0 0 0 nc|ENSG00000117598|Q32ZL2-2|PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5 nc|ENSG00000117598|Q32ZL2-2|PLPPR5 nc|ENSG00000117598|Q32ZL2-2|PLPPR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7074890136719 3 387.506213 1159.49681 0.057085 2.2121E-05 0.93437 0.00036207 0.99146 0.00038419 387.5065246369117 104.11 1.2374 100.06 99.524 100.76 -4.0543 99 34 4 0 0 0 0.75318 1 20111 20111 4.7159 0.30977 1 18919000 32223 2994 21484 21499 31869 31869 -0.07655985539099674 NYTALGCQQY 10 Unmodified _NYTALGCQQY_ 0 0 0 nc|ENSG00000117598|Q32ZL2-2|PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5 nc|ENSG00000117598|Q32ZL2-2|PLPPR5 nc|ENSG00000117598|Q32ZL2-2|PLPPR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 387.506213 1159.49681 0.19596 7.5935E-05 0.88246 0.00034196 1.0784 0.00041789 387.5065201685483 99.845 1.0349 99.845 99.41 100.44 0 -0.16444 -0.00014067 NaN 4.7159 91 29 4 NaN NaN NaN NaN 0 NaN NaN 0 15648000 32224 2994 21484 21499 -0.07655985539099674 NYTALGCQQY 10 Unmodified _NYTALGCQQY_ 0 0 0 nc|ENSG00000117598|Q32ZL2-2|PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5 nc|ENSG00000117598|Q32ZL2-2|PLPPR5 nc|ENSG00000117598|Q32ZL2-2|PLPPR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 387.506213 1159.49681 -0.39514 -0.00015312 1.3417 0.00051993 0.9466 0.00036681 387.50670200701495 104.28 1.1278 100.06 99.519 100.65 -4.2183 0.048213 0.00039324 NaN 4.7159 102 32 4 NaN NaN NaN NaN 0 NaN NaN 0 21120000 32225 2994 21484 21499 -0.07655985539099674 NYTALGCQQY 10 Unmodified _NYTALGCQQY_ 0 0 0 nc|ENSG00000117598|Q32ZL2-2|PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5 nc|ENSG00000117598|Q32ZL2-2|PLPPR5 nc|ENSG00000117598|Q32ZL2-2|PLPPR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 387.506213 1159.49681 0.15522 6.015E-05 0.83585 0.0003239 0.99108 0.00038405 387.50650912970826 104.42 1.177 100.08 99.619 100.8 -4.346 0.067294 -0.00019486 NaN 4.7159 103 33 4 NaN NaN NaN NaN 0 NaN NaN 0 19819000 32226 2994 21484 21499 -0.07655985539099674 NYTIFEME 8 Unmodified _NYTIFEME_ 0 0 0 tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1 tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1 tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6940307617188 2 523.7286 1045.44265 -0.17613 -9.2244E-05 -0.63189 -0.00033094 -0.80802 -0.00042318 523.727166226897 90.33 0.94488 86.286 85.847 86.792 -4.0443 66 26 4 0 0 0 8448 1 17231 17231 14.838 12.207 1 10517000 32227 26470 21485 21500 31870 31870 -0.07825577690687169 NYTIFEME 8 Unmodified _NYTIFEME_ 0 0 0 tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1 tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1 tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.7286 1045.44265 0.15856 8.3042E-05 -2.6501 -0.0013879 -2.4915 -0.0013049 523.726816591632 86.014 0.81304 86.014 85.539 86.352 0 -0.16206 -0.00047338 NaN 14.838 54 22 3 NaN NaN NaN NaN 0 NaN NaN 0 10644000 32228 26470 21485 21500 -0.07825577690687169 NYTIFEME 8 Unmodified _NYTIFEME_ 0 0 0 tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1 tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1 tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.7286 1045.44265 -0.17613 -9.2244E-05 -0.63189 -0.00033094 -0.80802 -0.00042318 523.727166226897 90.33 0.94488 86.286 85.847 86.792 -4.0443 0.10993 0.0016406 NaN 14.838 66 26 4 NaN NaN NaN NaN 0 NaN NaN 0 10517000 32229 26470 21485 21500 -0.07825577690687169 NYTSLIAF 8 Unmodified _NYTSLIAF_ 0 0 0 IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 114.1 1 109.63 109.13 110.13 -4.4726 0 0 0 0.21486 1 22482 22482 1.8442 0.36234 1 32230 7326 21486 21501 31871 31871 0.003546936318684857 NYVLSAGVDK 10 Unmodified _NYVLSAGVDK_ 0 0 0 ENSG00000092377|ENST00000383032|TBL1Y ENSG00000092377|ENST00000383032|TBL1Y ENSG00000092377|ENST00000383032|TBL1Y MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2799682617188 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 140.65 1 140.65 140.15 141.15 0 0 0 0 2.8426 1 28008 28008 0.51642 0.30909 1 32231 1833 21487 21502 31872 31872 0.020531352350417365 NYWRNVIPDP 10 Unmodified _NYWRNVIPDP_ 0 0 0 ENST00000510955.5_1_4:178358517-178361430:-|nuORF;ENST00000506853.5_1_4:178355638-178363529:-|nuORF;ENSG00000038002|ENST00000264595|AGA ENST00000510955.5_1_4:178358517-178361430:-|nuORF ENST00000510955.5_1_4:178358517-178361430:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2515563964844 3 425.21565 1272.62512 NaN NaN NaN NaN NaN NaN NaN 118.65 1 114.24 113.74 114.74 -4.4088 0 0 0 2.8426 1 22829 22829 3.8763 0.80407 1 32232 1179 21488 21503 31873 31873 -0.0002868223373297951 PAAAAEQNGQ 10 Unmodified _PAAAAEQNGQ_ 0 0 0 REV__nc|ENSG00000078328|Q9NWB1-4|RBFOX1 REV__nc|ENSG00000078328|Q9NWB1-4|RBFOX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7239074707031 2 478.725238 955.435923 NaN NaN NaN NaN NaN NaN NaN 162.4 1 162.4 161.9 162.9 0 0 0 0 0.22588 1 32649 32649 11.64 1.4569 1 + 32233 23953 21489 21504 31874 31874 -0.043577545270409246 PAAAAEQNGQ 10 Unmodified _PAAAAEQNGQ_ 0 0 0 REV__nc|ENSG00000078328|Q9NWB1-4|RBFOX1 REV__nc|ENSG00000078328|Q9NWB1-4|RBFOX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7247619628906 2 478.725238 955.435923 NaN NaN NaN NaN NaN NaN NaN 163.44 1 158.65 158.15 159.15 -4.7898 0 0 0 0.22588 1 32580 32580 12.532 3.1841 1 + 32234 23953 21489 21504 31875 31875 -0.043577545270409246 PAAAAEQNGQ 10 Unmodified _PAAAAEQNGQ_ 0 0 0 REV__nc|ENSG00000078328|Q9NWB1-4|RBFOX1 REV__nc|ENSG00000078328|Q9NWB1-4|RBFOX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7254638671875 2 478.725238 955.435923 NaN NaN NaN NaN NaN NaN NaN 174.08 1 169.2 168.7 169.7 -4.8845 0 0 0 0.22588 1 34579 34579 11.64 2.2929 1 + 32235 23953 21489 21504 31876 31876 -0.043577545270409246 PAAAATRTQA 10 Unmodified _PAAAATRTQA_ 0 0 0 REV__ENST00000239444.3_2_5:140557375-140557534:+|nuORF REV__ENST00000239444.3_2_5:140557375-140557534:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7414245605469 2 479.259248 956.503943 -0.060708 -2.9095E-05 -0.25214 -0.00012084 -0.31285 -0.00014994 479.2589801174275 21.435 0.33661 21.435 21.265 21.602 0 12 9 2 0 0 0 0.81109 1 3583 3583 13.042 6.3193 1 779590 + 32236 20087 21490 21505 31877 31877 0.023951151236133228 PAAAHEPG 8 Unmodified _PAAAHEPG_ 0 0 0 CNTNAP1|p.A230Gfs*31|1|0.28|ENSG00000108797|chr17:42685388-42685389|-/G|frameshift_variant CNTNAP1|p.A230Gfs*31|1|0.28|ENSG00000108797|chr17:42685388-42685389|-/G|frameshift_variant CNTNAP1|p.A230Gfs*31|1|0.28|ENSG00000108797|chr17:42685388-42685389|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2120361328125 2 375.182478 748.350402 NaN NaN NaN NaN NaN NaN NaN 87.079 1 87.079 86.579 87.579 0 0 0 0 0.21486 1 16995 16995 5.7604 0.52976 1 32237 602 21491 21506 31878 31878 -0.03383874922042196 PAAANYRS 8 Unmodified _PAAANYRS_ 0 0 0 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.236572265625 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 33.067 1 33.067 32.567 33.567 0 0 0 0 0.21486 1 6026 6026 7.2892 1.5288 1 32238 3905 21492 21507 31879 31879 -0.01620514484955038 PAAANYRS 8 Unmodified _PAAANYRS_ 0 0 0 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2376708984375 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 23.05 1 21.261 20.761 21.761 -1.7886 0 0 0 0.21486 1 3690 3690 7.2892 0.93513 1 32239 3905 21492 21507 31880 31880 -0.01620514484955038 PAAAPDVGAF 10 Unmodified _PAAAPDVGAF_ 0 0 0 REV__PHC1|p.A848Dfs*59|1|0.09|ENSG00000111752|chr12:8937240-8937241|-/ACCAC|frameshift_variant REV__PHC1|p.A848Dfs*59|1|0.09|ENSG00000111752|chr12:8937240-8937241|-/ACCAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2303161621094 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 165.6 1 160.81 160.31 161.31 -4.7898 0 0 0 0.22588 1 33181 33181 12.532 3.1841 1 + 32240 24459 21493 21508 31881 31881 -0.010864770279567892 PAAAPPPHTGQ 11 Unmodified _PAAAPPPHTGQ_ 0 0 0 RASGRF2|p.S776A|1|0.35|ENSG00000113319|chr5:81113776-81113776|T/G|missense_variant RASGRF2|p.S776A|1|0.35|ENSG00000113319|chr5:81113776-81113776|T/G|missense_variant RASGRF2|p.S776A|1|0.35|ENSG00000113319|chr5:81113776-81113776|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2689208984375 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 170.25 1 170.25 169.75 170.75 0 0 0 0 0.22775 1 34997 34997 10.074 2.1638 1 32241 12866 21494 21509 31882 31882 3.401640651645721E-05 PAAAPRRHQQQ 11 Unmodified _PAAAPRRHQQQ_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7568969726562 2 630.339427 1258.6643 0.40086 0.00025268 -3.5301 -0.0022251 -3.1292 -0.0019725 630.8374027746962 129.63 0.17108 129.63 129.53 129.71 0 6 4 2 0 0 0 0.68099 1 25620 25620 13.042 2.9685 1 929960 32242 11133 21495 21510 31883 31883 0.04531462840509448 PAAAPRRHQQQ 11 Unmodified _PAAAPRRHQQQ_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 630.339427 1258.6643 0.28478 0.00017951 -3.1724 -0.0019997 -2.8876 -0.0018202 630.8397512380989 134.15 0.16801 129.27 129.2 129.36 -4.8726 -0.17936 0.00024483 NaN 13.042 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2024800 32243 11133 21495 21510 0.04531462840509448 PAAAQRTPRLA 11 Unmodified _PAAAQRTPRLA_ 0 0 0 REV__YY2|p.K140Sfs*46|1|0.25|ENSG00000230797|chrX:21856899-21856899|A/-|frameshift_variant REV__YY2|p.K140Sfs*46|1|0.25|ENSG00000230797|chrX:21856899-21856899|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3309936523438 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 174.31 1 169.42 168.92 169.92 -4.8916 0 0 0 0.22775 1 34696 34696 10.074 0.6908 1 + 32244 25552 21496 21511 31884 31884 0.08778730240078403 PAAARRPPLVR 11 Unmodified _PAAARRPPLVR_ 0 0 0 REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2816772460938 2 602.375281 1202.73601 NaN NaN NaN NaN NaN NaN NaN 173.93 1 169.14 168.64 169.64 -4.7898 0 0 0 0.22862 1 35508 35508 9.3831 0 1 + 32245 24395 21497 21512 31885 31885 0.14275002265003423 PAAATGGG 8 Unmodified _PAAATGGG_ 0 0 0 REV__ENSG00000181619|ENST00000395116|GPR135 REV__ENSG00000181619|ENST00000395116|GPR135 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2847290039062 1 601.294016 600.28674 0.54548 0.00032799 0.27577 0.00016582 0.82125 0.00049381 601.2968385617755 171.65 0.31485 166.74 166.55 166.87 -4.9149 10 8 2 0 0 0 0.72861 1 34010 34010 10.183 3.8293 1 3534400 + 32246 18735 21498 21513 31886 31886 -0.02939235359133363 PAACAGSRPLT 11 Unmodified _PAACAGSRPLT_ 0 0 0 ENST00000533620.5_1_11:120169092-120189098:+|nuORF ENST00000533620.5_1_11:120169092-120189098:+|nuORF ENST00000533620.5_1_11:120169092-120189098:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2694091796875 2 522.268758 1042.52296 NaN NaN NaN NaN NaN NaN NaN 170.32 1 165.53 165.03 166.03 -4.7898 0 0 0 0.22943 1 34557 34557 8.7454 0.83525 1 32247 10997 21499 21514 31887 31887 0.0034032842299893673 PAACGHHG 8 Unmodified _PAACGHHG_ 0 0 0 ENST00000265107.8_1_5:37379417-37381704:+|nuORF ENST00000265107.8_1_5:37379417-37381704:+|nuORF ENST00000265107.8_1_5:37379417-37381704:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.212646484375 2 375.161022 748.307492 NaN NaN NaN NaN NaN NaN NaN 67.488 1 64.38 63.88 64.88 -3.1086 0 0 0 0.2396 1 13089 13089 0.0082765 0 1 32248 8351 21500 21515 31888 31888 -0.07672968251119983 PAACQPVDCY 10 Unmodified _PAACQPVDCY_ 0 0 0 REV__ENSG00000122194|ENST00000308192|PLG REV__ENSG00000122194|ENST00000308192|PLG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2769165039062 2 533.720252 1065.42595 0.14858 7.9301E-05 -0.16095 -8.5904E-05 -0.012371 -6.6028E-06 533.7217198404454 143.94 0.17264 139.27 139.19 139.36 -4.6694 5 4 2 0 0 0 0.91046 1 28492 28492 1.8442 0 1 2546000 + 32249 15679 21501 21516 31889 31889 -0.10414401848288435 PAACRAFDVP 10 Unmodified _PAACRAFDVP_ 0 0 0 ENSG00000128039|ENST00000264228|SRD5A3 ENSG00000128039|ENST00000264228|SRD5A3 ENSG00000128039|ENST00000264228|SRD5A3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6870727539062 2 523.758027 1045.5015 NaN NaN NaN NaN NaN NaN NaN 170.94 1 166.03 165.53 166.53 -4.9149 0 0 0 0.22569 1 33820 33820 15.847 1.0089 1 32250 3504 21502 21517 31890 31890 -0.01943056605705351 PAACVCSYDD 10 Unmodified _PAACVCSYDD_ 0 0 0 ENSG00000099769|ENST00000215539|IGFALS;nc|ENSG00000099769|P35858-2|IGFALS ENSG00000099769|ENST00000215539|IGFALS ENSG00000099769|ENST00000215539|IGFALS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2576293945312 2 522.194067 1042.37358 NaN NaN NaN NaN NaN NaN NaN 160.99 1 160.99 160.49 161.49 0 0 0 0 0.22588 1 32330 32330 4.3292 0.73274 1 32251 1898 21503 21518 31891 31891 -0.14590984981919064 PAADLPQHAPL 11 Unmodified _PAADLPQHAPL_ 0 0 0 REV__ENSG00000186862|ENST00000619208|PDZD7 REV__ENSG00000186862|ENST00000619208|PDZD7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 565.1179809570312 2 565.303655 1128.59276 NaN NaN NaN NaN NaN NaN NaN 173.19 1 173.19 172.69 173.69 0 0 0 0 0.22943 1 35801 35801 8.7454 2.0222 1 + 32252 19060 21504 21519 31892 31892 0.03360530363283942 PAADTRRMCM 10 Unmodified _PAADTRRMCM_ 0 0 0 nc|ENSG00000111679|P29350-4|PTPN6 nc|ENSG00000111679|P29350-4|PTPN6 nc|ENSG00000111679|P29350-4|PTPN6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3134155273438 2 576.259553 1150.50455 NaN NaN NaN NaN NaN NaN NaN 164.7 1 159.91 159.41 160.41 -4.7898 0 0 0 0.22588 1 32932 32932 4.3292 0 1 32253 12283 21505 21520 31893 31893 -0.06467872814869224 PAAEAEEQPA 10 Unmodified _PAAEAEEQPA_ 0 0 0 REV__ENSG00000179580|ENST00000569714|RNF151 REV__ENSG00000179580|ENST00000569714|RNF151 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 506.79632568359375 2 506.732729 1011.4509 NaN NaN NaN NaN NaN NaN NaN 164.19 1 164.19 163.69 164.69 0 0 0 0 0.22588 1 33173 33173 7.9102 0 1 + 32254 18660 21506 21521 31894 31894 -0.0543630744971324 PAAEAHAA 8 Unmodified _PAAEAHAA_ 0 0 0 sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1;sp|Q6SW99|PP150_HCMVMTegumentproteinpp150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL32PE=3SV=1 sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1 sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 369.1819152832031 2 369.182478 736.350402 NaN NaN NaN NaN NaN NaN NaN 52.995 1 50.111 49.611 50.611 -2.8837 0 0 0 0.22666 1 10093 10093 0.68139 0.42991 1 32255 25746 21507 21522 31895 31895 -0.028318749220602513 PAAEEEEEEE 10 Unmodified _PAAEEEEEEE_ 0 0 0 REV__ENSG00000101342|ENST00000217320|TLDC2 REV__ENSG00000101342|ENST00000217320|TLDC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 581.04248046875 2 581.22513 1160.43571 NaN NaN NaN NaN NaN NaN NaN 171.55 1 166.67 166.17 167.17 -4.873 0 0 0 0.22588 1 34004 34004 4.3292 0 1 + 32256 14780 21508 21523 31896 31896 -0.1380926382821599 PAAEFDDEDDH 11 Unmodified _PAAEFDDEDDH_ 0 0 0 REV__ENST00000472623.1_1_X:69646726-69652182:+|nuORF REV__ENST00000472623.1_1_X:69646726-69652182:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.758056640625 2 630.736197 1259.45784 NaN NaN NaN NaN NaN NaN NaN 170.5 1 165.62 165.12 166.12 -4.873 0 0 0 0.22632 1 33743 33743 0.03141 0.030028 1 + 32257 22057 21509 21524 31897 31897 -0.1615103935978368 PAAEPLPLFPQ 11 Unmodified _PAAEPLPLFPQ_ 0 0 0 REV__ENSG00000272674|ENST00000609684|PCDHB16 REV__ENSG00000272674|ENST00000609684|PCDHB16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.259765625 2 590.324057 1178.63356 NaN NaN NaN NaN NaN NaN NaN 142.03 1 137 136.5 137.5 -5.0261 0 0 0 0.22862 1 27363 27363 9.3831 0 1 + 32258 19921 21510 21525 31898 31898 0.051388716829023906 PAAERTFFR 9 Unmodified _PAAERTFFR_ 0 0 0 ENST00000536984.6_2_18:63418077-63476947:+|nuORF ENST00000536984.6_2_18:63418077-63476947:+|nuORF ENST00000536984.6_2_18:63418077-63476947:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7904052734375 2 547.790715 1093.56688 NaN NaN NaN NaN NaN NaN NaN 165.61 1 160.63 160.13 161.13 -4.9811 0 0 0 0.23508 1 32385 32385 11.64 0.81637 1 32259 11029 21511 21526 31899 31899 0.02383680911657393 PAAESRKLSK 10 Unmodified _PAAESRKLSK_ 0 0 0 REV__ENST00000336767.5_1_5:34915522-34915669:+|nuORF REV__ENST00000336767.5_1_5:34915522-34915669:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.772705078125 2 543.81693 1085.61931 NaN NaN NaN NaN NaN NaN NaN 15.039 1 13.817 13.317 14.317 -1.2219 0 0 0 0.22588 1 2076 2076 11.64 0 1 + 32260 20667 21512 21527 31900 31900 0.07992219254606425 PAAFKQVFSGK 11 Unmodified _PAAFKQVFSGK_ 0 0 0 ENST00000481865.5_1_3:195611475-195611958:-|nuORF ENST00000481865.5_1_3:195611475-195611958:-|nuORF ENST00000481865.5_1_3:195611475-195611958:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2695922851562 2 590.329673 1178.64479 NaN NaN NaN NaN NaN NaN NaN 156.23 1 150.94 150.44 151.44 -5.2854 0 0 0 0.23087 1 30306 30306 7.609 0.31972 1 32261 10384 21513 21528 31901 31901 0.0626169377703718 PAAFVDGP 8 Unmodified _PAAFVDGP_ 0 0 0 REV__nc|ENSG00000204624|Q9P2K9-2|DISP3 REV__nc|ENSG00000204624|Q9P2K9-2|DISP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.71136474609375 2 387.195054 772.375555 -0.0050782 -1.9663E-06 1.2095 0.00046832 1.2044 0.00046635 387.1956605993342 40.114 0.63564 37.575 37.109 37.745 -2.5398 23 17 2 0 0 0 8448 1 7188 7188 0.62683 0 1 1219700 + 32262 19555 21514 21529 31902 31902 -0.019738201194627436 PAAGALLWVLL 11 Unmodified _PAAGALLWVLL_ 0 0 0 nc|ENSG00000143443|Q9BUN1-2|MENT;ENSG00000143443|ENST00000368926|C1orf56 nc|ENSG00000143443|Q9BUN1-2|MENT nc|ENSG00000143443|Q9BUN1-2|MENT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 562.22412109375 2 562.347335 1122.68012 NaN NaN NaN NaN NaN NaN NaN 156.02 1 151.24 150.74 151.74 -4.7791 0 0 0 0.23199 1 31017 31017 6.7232 1.9672 1 32263 4489 21515 21530 31903 31903 0.12368356304864392 PAAGAQAERPN 11 Unmodified _PAAGAQAERPN_ 0 0 0 REV__ENSG00000101542|ENST00000262717|CDH20 REV__ENSG00000101542|ENST00000262717|CDH20 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26220703125 2 541.272887 1080.53122 NaN NaN NaN NaN NaN NaN NaN 164.54 1 159.75 159.25 160.25 -4.7898 0 0 0 0.22775 1 32889 32889 10.074 2.1638 1 + 32264 14793 21516 21531 31904 31904 -0.005824013360097524 PAAGERHRMG 10 Unmodified _PAAGERHRMG_ 0 0 0 nc|ENSG00000187609|Q8N9H8-4|EXD3;ENSG00000187609|ENST00000340951|EXD3;nc|ENSG00000187609|Q8N9H8-5|EXD3;EXD3|p.S120Qfs*52|2|0.34|ENSG00000187609|chr9:137373009-137373010|-/G|frameshift_variant nc|ENSG00000187609|Q8N9H8-4|EXD3 nc|ENSG00000187609|Q8N9H8-4|EXD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2682495117188 2 541.269624 1080.5247 NaN NaN NaN NaN NaN NaN NaN 165.66 1 160.71 160.21 161.21 -4.9484 0 0 0 2.8426 1 32388 32388 1.0651 0 1 32265 7115 21517 21532 31905 31905 -0.012346177683639326 PAAGGAAKH 9 Unmodified _PAAGGAAKH_ 0 0 0 REV__STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant REV__STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 390.2120056152344 2 390.211569 778.408586 NaN NaN NaN NaN NaN NaN NaN 112.74 1 108.22 107.72 108.72 -4.5259 0 0 0 0.23508 1 21642 21642 9.3474 2.9933 1 + 32266 17581 21518 21533 31906 31906 0.010518067232283101 PAAGGGMA 8 Unmodified _PAAGGGMA_ 0 0 0 REV__ENST00000515669.5_1_5:102594747-102611616:+|nuORF REV__ENST00000515669.5_1_5:102594747-102611616:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7606201171875 1 631.286822 630.279546 1.1502 0.00072608 -0.27708 -0.00017492 0.87308 0.00055116 631.2881543710074 164.16 0.1013 159.37 159.3 159.4 -4.7898 4 2 2 0 0 0 1.0268 1 32792 32792 0.79363 0 1 2498900 + 32267 22591 21519 21534 31907 31907 -0.05038291231221592 PAAGGHGG 8 Unmodified _PAAGGHGG_ 0 0 0 REV__nc|ENSG00000141568|Q01167-2|FOXK2 REV__nc|ENSG00000141568|Q01167-2|FOXK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7637329101562 1 623.289599 622.282323 0.70639 0.00044029 -1.9338 -0.0012053 -1.2275 -0.00076506 623.2882404610068 166.79 0.10196 161.89 161.84 161.94 -4.8916 4 2 2 0 0 0 1.0035 1 32730 32730 2.8892 0 1 16635000 + 32268 16640 21520 21535 31908 31908 -0.0439269978203356 PAAGGWSTTVP 11 Unmodified _PAAGGWSTTVP_ 0 0 0 ENST00000399767.5_1_22:18226574-18257190:-|nuORF ENST00000399767.5_1_22:18226574-18257190:-|nuORF ENST00000399767.5_1_22:18226574-18257190:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.263671875 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 164.78 1 164.78 164.28 165.28 0 0 0 0 0.22775 1 33360 33360 10.074 2.1638 1 32269 9500 21521 21536 31909 31909 -0.011194204534831442 PAAGGWSTTVP 11 Unmodified _PAAGGWSTTVP_ 0 0 0 ENST00000399767.5_1_22:18226574-18257190:-|nuORF ENST00000399767.5_1_22:18226574-18257190:-|nuORF ENST00000399767.5_1_22:18226574-18257190:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2613525390625 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 172.62 1 167.74 167.24 168.24 -4.881 0 0 0 0.23264 1 34278 34278 6.2058 1.4498 1 32270 9500 21521 21536 31910 31910 -0.011194204534831442 PAAGHLADWQ 10 Unmodified _PAAGHLADWQ_ 0 0 0 REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26123046875 2 533.259248 1064.50394 NaN NaN NaN NaN NaN NaN NaN 170.79 1 170.79 170.29 171.29 0 0 0 0 0.22588 1 35140 35140 7.9102 1.187 1 + 32271 13974 21522 21537 31911 31911 -0.0257288487639471 PAAGLETPAA 10 Unmodified _PAAGLETPAA_ 0 0 0 ENST00000515004.5_3_4:1173253-1188902:-|nuORF ENST00000515004.5_3_4:1173253-1188902:-|nuORF ENST00000515004.5_3_4:1173253-1188902:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.1219787597656 2 449.23745 896.460347 0.46896 0.00021067 -0.75101 -0.00033738 -0.28205 -0.00012671 449.23700440523214 30.301 0.66801 28.227 27.937 28.605 -2.0743 23 18 2 0 0 0 0.88157 1 5184 5184 7.9102 5.6074 1 384290 32272 10779 21523 21538 31912 31912 0.007975056264740488 PAAGLETPAA 10 Unmodified _PAAGLETPAA_ 0 0 0 ENST00000515004.5_3_4:1173253-1188902:-|nuORF ENST00000515004.5_3_4:1173253-1188902:-|nuORF ENST00000515004.5_3_4:1173253-1188902:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 449.23745 896.460347 0.37269 0.00016742 -3.3047 -0.0014846 -2.932 -0.0013172 449.236513483611 30.349 0.69569 28.232 27.843 28.539 -2.1167 -0.02594 -0.0014676 NaN 7.9102 22 19 2 NaN NaN NaN NaN 0 NaN NaN 0 538630 32273 10779 21523 21538 0.007975056264740488 PAAGLETPAA 10 Unmodified _PAAGLETPAA_ 0 0 0 ENST00000515004.5_3_4:1173253-1188902:-|nuORF ENST00000515004.5_3_4:1173253-1188902:-|nuORF ENST00000515004.5_3_4:1173253-1188902:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.23745 896.460347 0.28774 0.00012927 -2.3042 -0.0010351 -2.0164 -0.00090586 449.23669597781696 30.208 0.59413 28.316 27.928 28.522 -1.8928 0.05722 -0.0005687 NaN 7.9102 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 419150 32274 10779 21523 21538 0.007975056264740488 PAAGLRAGH 9 Unmodified _PAAGLRAGH_ 0 0 0 MXRA8|p.R301Gfs*85|1|0.82|ENSG00000162576|chr1:1354730-1354731|GG/-|frameshift_variant MXRA8|p.R301Gfs*85|1|0.82|ENSG00000162576|chr1:1354730-1354731|GG/-|frameshift_variant MXRA8|p.R301Gfs*85|1|0.82|ENSG00000162576|chr1:1354730-1354731|GG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.23638916015625 2 425.238119 848.461684 NaN NaN NaN NaN NaN NaN NaN 169.94 1 169.94 169.44 170.44 0 0 0 0 0.23411 1 34908 34908 13.508 2.3934 1 32275 12178 21524 21539 31913 31913 0.031391845059033585 PAAGPVVTREP 11 Unmodified _PAAGPVVTREP_ 0 0 0 REV__ZNF469|p.I1874Yfs*24|1|0.39|ENSG00000225614|chr16:88433167-88433167|C/-|frameshift_variant REV__ZNF469|p.I1874Yfs*24|1|0.39|ENSG00000225614|chr16:88433167-88433167|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7872924804688 2 547.303655 1092.59276 0.25213 0.00013799 -3.8958 -0.0021322 -3.6437 -0.0019942 547.300652400357 143.47 0.21616 138.81 138.64 138.86 -4.656 14 5 4 0 0 0 0.91597 1 28379 28379 10.8 2.8894 1 3450500 + 32276 19724 21525 21540 31914 31914 0.050165303632638825 PAAGRLHGA 9 Unmodified _PAAGRLHGA_ 0 0 0 ENST00000215904.6_1_22:38054740-38054869:+|nuORF ENST00000215904.6_1_22:38054740-38054869:+|nuORF ENST00000215904.6_1_22:38054740-38054869:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.237548828125 2 425.238119 848.461684 NaN NaN NaN NaN NaN NaN NaN 156.73 1 156.73 156.23 157.23 0 0 0 0 0.23508 1 31445 31445 2.3027 0 1 32277 8101 21526 21541 31915 31915 0.0313918450589199 PAAGTAVK 8 Unmodified _PAAGTAVK_ 0 0 0 REV__ENST00000559795.5_1_15:77287755-77316384:+|nuORF REV__ENST00000559795.5_1_15:77287755-77316384:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.54986572265625 2 357.710871 713.407189 -0.31176 -0.00011152 -0.34158 -0.00012219 -0.65334 -0.00023371 357.7106745747124 59.27 0.73284 56.36 56.11 56.843 -2.9105 33 20 2 0 0 0 0.73426 1 11453 11453 9.3474 0.75416 1 867920 + 32278 23034 21527 21542 31916 31916 0.0390217263446857 PAAGTAVK 8 Unmodified _PAAGTAVK_ 0 0 0 REV__ENST00000559795.5_1_15:77287755-77316384:+|nuORF REV__ENST00000559795.5_1_15:77287755-77316384:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 357.710871 713.407189 0.087594 3.1333E-05 -1.011 -0.00036164 -0.92338 -0.0003303 357.71041656113 59.506 0.69607 56.192 55.961 56.657 -3.3139 -0.083784 -0.00023724 NaN 9.3474 25 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1067100 + 32279 23034 21527 21542 0.0390217263446857 PAAHATPPPG 10 Unmodified _PAAHATPPPG_ 0 0 0 ENST00000398136.6_2_11:102323274-102323652:-|nuORF ENST00000398136.6_2_11:102323274-102323652:-|nuORF ENST00000398136.6_2_11:102323274-102323652:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2272033691406 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 52.474 1 49.59 49.09 50.09 -2.8837 0 0 0 0.22552 1 9985 9985 18.135 3.5533 1 32280 9480 21528 21543 31917 31917 0.0003634506618936939 PAAHNSNT 8 Unmodified _PAAHNSNT_ 0 0 0 REV__MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant REV__MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3826904296875 1 811.369306 810.36203 0.49233 0.00039946 -0.19745 -0.00016021 0.29488 0.00023925 811.3685189495891 174.25 0.10814 174.25 174.17 174.27 0 4 2 2 0 0 0 0.7545 2 36045 36045;36066 6.3541 0 1 7877800 + 32281 19087 21529 21544 31918;31919 31918 -0.05073677898712958 PAAIDPAVPE 10 Unmodified _PAAIDPAVPE_ 0 0 0 ENSG00000187135|ENST00000335523|VSTM2B ENSG00000187135|ENST00000335523|VSTM2B ENSG00000187135|ENST00000335523|VSTM2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25634765625 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 127.24 1 122.44 121.94 122.94 -4.7958 0 0 0 0.18733 1 24422 24422 30.637 2.1497 1 32282 7098 21530 21545 31920 31920 0.012100613149982564 PAAIDPAVPE 10 Unmodified _PAAIDPAVPE_ 0 0 0 ENSG00000187135|ENST00000335523|VSTM2B ENSG00000187135|ENST00000335523|VSTM2B ENSG00000187135|ENST00000335523|VSTM2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25823974609375 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 126.97 1 122.27 121.77 122.77 -4.6998 0 0 0 0.15474 1 24425 24425 36.127 3.8215 1 32283 7098 21530 21545 31921 31921 0.012100613149982564 PAAIRRGYD 9 Unmodified _PAAIRRGYD_ 0 0 0 REV__ENST00000507521.1_1_5:139780777-139780855:-|nuORF REV__ENST00000507521.1_1_5:139780777-139780855:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 509.9693298339844 2 509.775065 1017.53558 NaN NaN NaN NaN NaN NaN NaN 151.31 1 151.31 150.81 151.81 0 0 0 0 0.23508 1 30300 30300 16.942 1.0951 1 + 32284 22501 21531 21546 31922 31922 0.02751107877566028 PAAIVVPFLF 10 Unmodified _PAAIVVPFLF_ 0 0 0 REV__ENST00000469741.6_1_19:41256312-41256444:-|nuORF REV__ENST00000469741.6_1_19:41256312-41256444:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 537.5152587890625 2 537.323328 1072.6321 NaN NaN NaN NaN NaN NaN NaN 172.02 1 167.15 166.65 167.65 -4.873 0 0 0 0.22588 1 34115 34115 4.3292 0.38484 1 + 32285 22018 21532 21547 31923 31923 0.09869282384806866 PAAKCWRFS 9 Unmodified _PAAKCWRFS_ 0 0 0 ENST00000268485.7_1_16:71660520-71668122:+|nuORF ENST00000268485.7_1_16:71660520-71668122:+|nuORF ENST00000268485.7_1_16:71660520-71668122:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.267333984375 2 533.268561 1064.52257 NaN NaN NaN NaN NaN NaN NaN 169.66 1 164.78 164.28 165.28 -4.873 0 0 0 0.23508 1 33521 33521 8.5933 1.8701 1 32286 8388 21533 21548 31924 31924 -0.007110465061714422 PAAKEPNINE 10 Unmodified _PAAKEPNINE_ 0 0 0 REV__CCNA2|p.P273Qfs*3|1|0.35|ENSG00000145386|chr4:121819556-121819556|G/-|frameshift_variant REV__CCNA2|p.P273Qfs*3|1|0.35|ENSG00000145386|chr4:121819556-121819556|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7965698242188 2 541.77747 1081.54039 0.31496 0.00017064 -2.1855 -0.0011841 -1.8706 -0.0010134 542.2782804190944 115.34 1.514 115.34 114.15 115.66 0 107 42 5 0 0 0 0.73527 1 22636 22636 7.609 0.31972 1 4454500 + 32287 13307 21534 21549 31925 31925 0.0028794722966267727 PAAKNLILKAL 11 Unmodified _PAAKNLILKAL_ 0 0 0 REV__ENSG00000120800|ENST00000261637|UTP20 REV__ENSG00000120800|ENST00000261637|UTP20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.321533203125 2 576.379166 1150.74378 NaN NaN NaN NaN NaN NaN NaN 174.31 1 174.31 173.81 174.81 0 0 0 0 0.23594 1 36078 36078 3.5965 0.31518 1 + 32288 15634 21535 21550 31926 31926 0.17443716741945536 PAAKQLTKG 9 Unmodified _PAAKQLTKG_ 0 0 0 ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 305.18621826171875 3 305.187032 912.539266 NaN NaN NaN NaN NaN NaN NaN 67.976 1 64.867 64.367 65.367 -3.1086 0 0 0 0.23508 1 13192 13192 2.4985 0.21571 1 32289 2702 21536 21551 31927 31927 0.07949777651424483 PAAKRKKEQP 10 Unmodified _PAAKRKKEQP_ 0 0 0 REV__ENSG00000174405|ENST00000442234|LIG4 REV__ENSG00000174405|ENST00000442234|LIG4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3111572265625 2 576.846022 1151.67749 0.30544 0.00017619 -0.97487 -0.00056235 -0.66942 -0.00038615 577.3459575902845 160.22 0.13647 160.22 160.14 160.27 0 5 3 2 0 0 0 0.8888 1 32173 32173 0.40072 0 1 850470 + 32290 18411 21537 21552 31928 31928 0.10771900899885622 PAAKVRTVGRP 11 Unmodified _PAAKVRTVGRP_ 0 0 0 REV__ENST00000578046.1_2_19:5687695-5687953:+|nuORF REV__ENST00000578046.1_2_19:5687695-5687953:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.319091796875 2 576.354014 1150.69348 NaN NaN NaN NaN NaN NaN NaN 164.69 1 159.63 159.13 160.13 -5.0648 0 0 0 0.23264 1 32134 32134 6.2058 1.8765 1 + 32291 23223 21538 21553 31929 31929 0.12415607136813378 PAALDALFFL 10 Unmodified _PAALDALFFL_ 0 0 0 ENST00000498513.5_1_9:130241670-130248879:+|nuORF ENST00000498513.5_1_9:130241670-130248879:+|nuORF ENST00000498513.5_1_9:130241670-130248879:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2048034667969 3 359.870821 1076.59063 0.10951 3.9409E-05 -0.45311 -0.00016306 -0.3436 -0.00012365 359.8706164974861 36.921 0.40766 34.573 34.346 34.754 -2.3479 17 11 2 0 0 0 0.76159 1 6535 6535 2.086 0 1 371520 32292 10604 21539 21554 31930 31930 0.0554010162547911 PAALDALFFL 10 Unmodified _PAALDALFFL_ 0 0 0 ENST00000498513.5_1_9:130241670-130248879:+|nuORF ENST00000498513.5_1_9:130241670-130248879:+|nuORF ENST00000498513.5_1_9:130241670-130248879:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20611572265625 3 359.870821 1076.59063 -0.43192 -0.00015544 0.26927 9.6903E-05 -0.16265 -5.8532E-05 359.8708403891616 36.841 0.60093 34.503 34.207 34.808 -2.3375 21 16 2 0 0 0 0.76159 1 6512 6512 2.086 0 1 453600 32293 10604 21539 21554 31931 31931 0.0554010162547911 PAALDALFFL 10 Unmodified _PAALDALFFL_ 0 0 0 ENST00000498513.5_1_9:130241670-130248879:+|nuORF ENST00000498513.5_1_9:130241670-130248879:+|nuORF ENST00000498513.5_1_9:130241670-130248879:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 359.870821 1076.59063 -0.24991 -8.9937E-05 -0.20551 -7.3957E-05 -0.45542 -0.00016389 359.87068087969817 34.637 0.47661 34.637 34.379 34.856 0 0.065681 -3.8953E-05 NaN 2.086 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 940600 32294 10604 21539 21554 0.0554010162547911 PAALDALFFL 10 Unmodified _PAALDALFFL_ 0 0 0 ENST00000498513.5_1_9:130241670-130248879:+|nuORF ENST00000498513.5_1_9:130241670-130248879:+|nuORF ENST00000498513.5_1_9:130241670-130248879:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 359.870821 1076.59063 -0.43192 -0.00015544 0.26927 9.6903E-05 -0.16265 -5.8532E-05 359.8708403891616 36.841 0.60093 34.503 34.207 34.808 -2.3375 -0.067629 0.00047363 NaN 2.086 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 453600 32295 10604 21539 21554 0.0554010162547911 PAALDWISLT 10 Unmodified _PAALDWISLT_ 0 0 0 REV__ENSG00000196781|ENST00000376499|TLE1 REV__ENSG00000196781|ENST00000376499|TLE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7939453125 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 164.78 1 164.78 164.28 165.28 0 0 0 0 0.22588 1 33361 33361 7.9102 0 1 + 32296 19280 21540 21555 31932 31932 0.03634609757477847 PAALGLCVLSC 11 Unmodified _PAALGLCVLSC_ 0 0 0 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6861572265625 2 523.772288 1045.53002 NaN NaN NaN NaN NaN NaN NaN 163.59 1 158.55 158.05 159.05 -5.0446 0 0 0 0.21257 1 31844 31844 15.847 2.3393 1 32297 12402 21541 21556 31933 31933 0.009079249792421251 PAALGLCVLSC 11 Unmodified _PAALGLCVLSC_ 0 0 0 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6936645507812 2 523.772288 1045.53002 NaN NaN NaN NaN NaN NaN NaN 163.62 1 158.58 158.08 159.08 -5.0446 0 0 0 0.2268 1 31853 31853 10.824 0.75 1 32298 12402 21541 21556 31934 31934 0.009079249792421251 PAALHALLIYY 11 Unmodified _PAALHALLIYY_ 0 0 0 REV__ENSG00000254470|ENST00000532090|AP5B1 REV__ENSG00000254470|ENST00000532090|AP5B1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7791137695312 2 622.855524 1243.69649 NaN NaN NaN NaN NaN NaN NaN 160.56 1 160.56 160.06 161.06 0 0 0 0 0.2268 1 32241 32241 10.824 0.024421 1 + 32299 19847 21542 21557 31935 31935 0.08439437470974553 PAALHALLIYY 11 Unmodified _PAALHALLIYY_ 0 0 0 REV__ENSG00000254470|ENST00000532090|AP5B1 REV__ENSG00000254470|ENST00000532090|AP5B1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7557983398438 2 622.855524 1243.69649 NaN NaN NaN NaN NaN NaN NaN 120.3 1 115.66 115.16 116.16 -4.645 0 0 0 0.23199 1 23092 23092 6.7232 0 1 + 32300 19847 21542 21557 31936 31936 0.08439437470974553 PAALKAFR 8 Unmodified _PAALKAFR_ 0 0 0 nc|ENSG00000069998|Q9BXW7-2|HDHD5;ENSG00000069998|ENST00000336737|HDHD5 nc|ENSG00000069998|Q9BXW7-2|HDHD5 nc|ENSG00000069998|Q9BXW7-2|HDHD5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2201843261719 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 14.285 1 13.171 12.671 13.671 -1.1142 0 0 0 0.21486 1 2132 2132 6.3541 3.4649 1 32301 1422 21543 21558 31937 31937 0.08186116205172311 PAALKFSFY 9 Unmodified _PAALKFSFY_ 0 0 0 NDST3|p.P761Hfs*5|1|0.26|ENSG00000164100|chr4:118240682-118240682|C/-|frameshift_variant;ENSG00000164100|ENST00000296499|NDST3 NDST3|p.P761Hfs*5|1|0.26|ENSG00000164100|chr4:118240682-118240682|C/-|frameshift_variant NDST3|p.P761Hfs*5|1|0.26|ENSG00000164100|chr4:118240682-118240682|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2816162109375 2 522.28166 1042.54877 NaN NaN NaN NaN NaN NaN NaN 164.71 1 159.66 159.16 160.16 -5.0446 0 0 0 0.23508 1 32141 32141 7.9102 0 1 32302 5507 21544 21559 31938 31938 0.02919545936947543 PAALKVVRLK 10 Unmodified _PAALKVVRLK_ 0 0 0 ENST00000488281.1_1_14:47669981-47670080:-|nuORF;ENST00000468655.1_1_19:49994004-49994437:+|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3;ENSG00000142541|ENST00000391857|RPL13A ENST00000488281.1_1_14:47669981-47670080:-|nuORF ENST00000488281.1_1_14:47669981-47670080:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7901611328125 2 547.874051 1093.73355 0.27016 0.00014801 0.82994 0.0004547 1.1001 0.00060272 547.8753777766156 146.3 0.17554 141.62 141.54 141.71 -4.6868 6 4 2 0 0 0 0.91149 1 29021 29021 1.8442 1.3859 1 765710 32303 4425 21545 21560 31939 31939 0.19043153807342605 PAALLALLLLP 11 Unmodified _PAALLALLLLP_ 0 0 0 REV__ENSG00000185442|ENST00000327355|FAM174B REV__ENSG00000185442|ENST00000327355|FAM174B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 552.989990234375 2 552.873185 1103.73182 NaN NaN NaN NaN NaN NaN NaN 171.63 1 171.63 171.13 172.13 0 0 0 0 0.23594 1 35376 35376 3.5965 0 1 + 32304 18969 21546 21561 31940 31940 0.18410099998754959 PAALRRLQLL 10 Unmodified _PAALRRLQLL_ 0 0 0 ENST00000536896.2_1_1:26146746-26147157:-|nuORF ENST00000536896.2_1_1:26146746-26147157:-|nuORF ENST00000536896.2_1_1:26146746-26147157:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3226928710938 2 575.874582 1149.73461 NaN NaN NaN NaN NaN NaN NaN 174.26 1 169.38 168.88 169.88 -4.8845 0 0 0 0.22588 1 34615 34615 4.3292 0.38484 1 32305 11027 21547 21562 31941 31941 0.16573368176273107 PAALTGGLREP 11 Unmodified _PAALTGGLREP_ 0 0 0 ENST00000588387.1_1_19:14265998-14266202:+|nuORF ENST00000588387.1_1_19:14265998-14266202:+|nuORF ENST00000588387.1_1_19:14265998-14266202:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2698974609375 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 138.07 1 133.43 132.93 133.93 -4.6413 0 0 0 0.22683 1 27254 27254 10.8 1.4164 1 32306 11571 21548 21563 31942 31942 0.055685303633026706 PAALVRDKMME 11 Unmodified _PAALVRDKMME_ 0 0 0 nc|ENSG00000100416|O75648-2|TRMU;ENSG00000100416|ENST00000645190|TRMU;ENST00000491612.1_1_22:46749554-46751490:+|nuORF;nc|ENSG00000100416|O75648-3|TRMU;nc|ENSG00000100416|O75648-4|TRMU nc|ENSG00000100416|O75648-2|TRMU nc|ENSG00000100416|O75648-2|TRMU MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7590942382812 2 630.825583 1259.63661 NaN NaN NaN NaN NaN NaN NaN 164.32 1 164.32 163.82 164.82 0 0 0 0 0.23264 1 33214 33214 6.2058 0.9089 1 32307 1974 21549 21564 31943 31943 0.017180554737478815 PAAMDSDDEM 10 Unmodified _PAAMDSDDEM_ 0 0 0 ENST00000406354.1_1_4:140469244-140477306:-|nuORF ENST00000406354.1_1_4:140469244-140477306:-|nuORF ENST00000406354.1_1_4:140469244-140477306:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2675170898438 2 541.194264 1080.37398 NaN NaN NaN NaN NaN NaN NaN 163.19 1 158.4 157.9 158.9 -4.7898 0 0 0 0.22588 1 32515 32515 7.2892 2.5332 1 32308 9540 21550 21565 31944 31944 -0.16299610052715252 PAANHIFSQP 10 Unmodified _PAANHIFSQP_ 0 0 0 R3HDM1|p.A971Lfs*26|1|0.4|ENSG00000048991|chr2:135722514-135722514|A/-|frameshift_variant;ENSG00000048991|ENST00000683871|R3HDM1 R3HDM1|p.A971Lfs*26|1|0.4|ENSG00000048991|chr2:135722514-135722514|A/-|frameshift_variant R3HDM1|p.A971Lfs*26|1|0.4|ENSG00000048991|chr2:135722514-135722514|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2737426757812 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 134.96 1 134.96 134.46 135.46 0 0 0 0 0.22588 1 26724 26724 10.824 0 1 32309 1233 21551 21566 31945 31945 -0.001803118423140404 PAANVARKFA 10 Unmodified _PAANVARKFA_ 0 0 0 ENSG00000180720|ENST00000682254|CHRM4 ENSG00000180720|ENST00000682254|CHRM4 ENSG00000180720|ENST00000682254|CHRM4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2637329101562 2 522.801083 1043.58761 -0.52326 -0.00027356 -0.94477 -0.00049393 -1.468 -0.00076749 523.3012554128334 145.55 0.20172 140.44 140.35 140.55 -5.1108 7 5 2 0 0 0 0.85325 1 28134 28134 3.9444 0 1 6008700 32310 6690 21552 21567 31946 31946 0.0675627129132863 PAAPALNPDAE 11 Unmodified _PAAPALNPDAE_ 0 0 0 REV__ENSG00000170145|ENST00000304987|SIK2 REV__ENSG00000170145|ENST00000304987|SIK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2686767578125 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 163.03 1 158.24 157.74 158.74 -4.7898 0 0 0 0.19804 1 32470 32470 19.257 8.4331 1 + 32311 18143 21553 21568 31947 31947 -0.015837416616705013 PAAPASEPRAQ 11 Unmodified _PAAPASEPRAQ_ 0 0 0 ENST00000427566.2_1_1:248100136-248100640:-|nuORF ENST00000427566.2_1_1:248100136-248100640:-|nuORF ENST00000427566.2_1_1:248100136-248100640:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7816772460938 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 163.17 1 158.06 157.56 158.56 -5.1033 0 0 0 0.2268 1 31737 31737 10.824 1.4408 1 32312 9743 21554 21569 31948 31948 0.008587693238041538 PAAPDPQGFG 10 Unmodified _PAAPDPQGFG_ 0 0 0 REV__ENST00000274963.12_1_6:36981492-36982473:+|nuORF REV__ENST00000274963.12_1_6:36981492-36982473:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72760009765625 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 157.22 1 157.22 156.72 157.72 0 0 0 0 0.22588 1 31550 31550 7.9102 0 1 + 32313 20289 21555 21570 31949 31949 -0.03955665033322475 PAAPEEPERR 10 Unmodified _PAAPEEPERR_ 0 0 0 REV__ENSG00000257093|ENST00000536163|DENND11 REV__ENSG00000257093|ENST00000536163|DENND11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3322143554688 2 576.293819 1150.57309 NaN NaN NaN NaN NaN NaN NaN 160.99 1 160.99 160.49 161.49 0 0 0 0 0.22588 1 32329 32329 7.9102 0.62092 1 + 32314 19870 21556 21571 31950 31950 0.003821543525191373 PAAPEEYSDPE 11 Unmodified _PAAPEEYSDPE_ 0 0 0 ENSG00000215397|ENST00000246104|SCRT2 ENSG00000215397|ENST00000246104|SCRT2 ENSG00000215397|ENST00000246104|SCRT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2962646484375 2 602.753858 1203.49316 0.47353 0.00028542 1.1911 0.00071795 1.6647 0.0010034 602.7542259553082 149.44 0.14226 144.24 144.18 144.32 -5.1994 5 3 2 0 0 0 0.96063 1 28963 28963 6.7232 2.3939 1 1615900 32315 7746 21557 21572 31951 31951 -0.10044376832001944 PAAPFRAAVIL 11 Unmodified _PAAPFRAAVIL_ 0 0 0 REV__ENST00000511885.6_1_4:2230963-2243443:-|nuORF REV__ENST00000511885.6_1_4:2230963-2243443:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 563.3427124023438 2 563.342584 1124.67061 NaN NaN NaN NaN NaN NaN NaN 169.14 1 164.21 163.71 164.71 -4.9295 0 0 0 0.23199 1 33381 33381 6.7232 0.99131 1 + 32316 22492 21558 21573 31952 31952 0.11326588019323935 PAAPGPRSPPP 11 Unmodified _PAAPGPRSPPP_ 0 0 0 REV__ENST00000261692.6_1_12:123751765-123756364:-|nuORF REV__ENST00000261692.6_1_12:123751765-123756364:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2681274414062 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 16.79 1 16.79 16.29 17.29 0 0 0 0 0.22862 1 2625 2625 9.3831 0 1 + 32317 20190 21559 21574 31953 31953 0.036402785373638835 PAAPGRRPQP 10 Unmodified _PAAPGRRPQP_ 0 0 0 REV__nc|ENSG00000284479|A0A1B0GW54|SMIM39 REV__nc|ENSG00000284479|A0A1B0GW54|SMIM39 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7963256835938 2 523.796332 1045.57811 NaN NaN NaN NaN NaN NaN NaN 168.76 1 163.89 163.39 164.39 -4.873 0 0 0 0.22561 1 33294 33294 16.942 3.4344 1 + 32318 24314 21560 21575 31954 31954 0.05714503005788174 PAAPHRPQ 8 Unmodified _PAAPHRPQ_ 0 0 0 REV__nc|ENSG00000187260|Q86TI4-4|WDR86 REV__nc|ENSG00000187260|Q86TI4-4|WDR86 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23443603515625 2 437.238119 872.461684 NaN NaN NaN NaN NaN NaN NaN 22.536 1 22.536 22.036 23.036 0 0 0 0 0.21486 1 3816 3816 5.2307 0 1 + 32319 24214 21561 21576 31955 31955 0.020351845058939944 PAAPKPSRPKC 11 Unmodified _PAAPKPSRPKC_ 0 0 0 REV__ENST00000561785.5_1_16:31485144-31485387:+|nuORF REV__ENST00000561785.5_1_16:31485144-31485387:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3153076171875 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 146.7 1 146.7 146.2 147.2 0 0 0 0 0.22501 1 29340 29340 12.241 0.60036 1 + 32320 16591 21562 21577 31956 31956 0.058808696194319054 PAAPLLVEP 9 Unmodified _PAAPLLVEP_ 0 0 0 REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7691650390625 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 165.96 1 160.98 160.48 161.48 -4.9811 0 0 0 0.23508 1 32484 32484 9.3474 0 1 + 32321 17748 21563 21578 31957 31957 0.0656785704561571 PAAPPAPPPD 10 Unmodified _PAAPPAPPPD_ 0 0 0 ENSG00000138606|ENST00000690270|SHF ENSG00000138606|ENST00000690270|SHF ENSG00000138606|ENST00000690270|SHF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.238525390625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 29.364 1 27.408 26.908 27.908 -1.9561 0 0 0 0.16852 1 5276 5276 34.102 0 1 32322 4185 21564 21579 31958 31958 -0.0016619051091311121 PAAPPLPQPIS 11 Unmodified _PAAPPLPQPIS_ 0 0 0 REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2 REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7810668945312 2 544.310949 1086.60735 0.50829 0.00027667 3.0927 0.0016834 3.601 0.0019601 544.8141906831183 158.16 0.17433 152.88 152.76 152.94 -5.2711 5 4 2 0 0 0 0.93546 1 30689 30689 2.4985 0 1 802680 + 32323 19410 21565 21580 31959 31959 0.06750602511442594 PAAPPTLPLV 10 Unmodified _PAAPPTLPLV_ 0 0 0 ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A ENST00000473039.5_1_9:126143713-126520026:-|nuORF ENST00000473039.5_1_9:126143713-126520026:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 488.52630615234375 2 488.29731 974.580068 NaN NaN NaN NaN NaN NaN NaN 160.93 1 160.93 160.43 161.43 0 0 0 0 0.22588 1 32315 32315 7.9102 0 1 32324 3081 21566 21581 31960 31960 0.09176118971049618 PAAPQLIKKE 10 Unmodified _PAAPQLIKKE_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7760620117188 2 547.832049 1093.64954 NaN NaN NaN NaN NaN NaN NaN 143.73 1 138.83 138.33 139.33 -4.8982 0 0 0 2.8426 1 27743 27743 1.9064 1.905 1 32325 3644 21567 21582 31961 31961 0.10646577919806077 PAAPQSKDGSF 11 Unmodified _PAAPQSKDGSF_ 0 0 0 ENSG00000204033|ENST00000372113|LRIT2;nc|ENSG00000204033|A6NDA9-2|LRIT2 ENSG00000204033|ENST00000372113|LRIT2 ENSG00000204033|ENST00000372113|LRIT2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 552.7269897460938 2 552.769645 1103.52474 NaN NaN NaN NaN NaN NaN NaN 148.62 1 143.91 143.41 144.41 -4.7095 0 0 0 0.22862 1 29513 29513 9.3831 2.66 1 32326 7555 21568 21583 31962 31962 -0.022883392873836783 PAAPRARRLS 10 Unmodified _PAAPRARRLS_ 0 0 0 REV__PPP2R5B|p.R42Afs*36|1|0.26|ENSG00000068971|chr11:64925853-64925853|G/-|frameshift_variant REV__PPP2R5B|p.R42Afs*36|1|0.26|ENSG00000068971|chr11:64925853-64925853|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7670288085938 2 547.830706 1093.64686 NaN NaN NaN NaN NaN NaN NaN 163.1 1 157.91 157.41 158.41 -5.1878 0 0 0 0.22561 1 31717 31717 16.942 4.7016 1 + 32327 24501 21569 21584 31963 31963 0.10378167305520947 PAAPRGRSLY 10 Unmodified _PAAPRGRSLY_ 0 0 0 ENSG00000141337|ENST00000621439|ARSG ENSG00000141337|ENST00000621439|ARSG ENSG00000141337|ENST00000621439|ARSG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77880859375 2 544.30399 1086.59343 0.28395 0.00015456 1.3867 0.00075478 1.6706 0.00090933 544.3053066173599 144.14 0.1393 139.47 139.4 139.54 -4.6694 5 3 2 0 0 0 0.86261 1 28531 28531 6.7232 0 1 3016400 32328 4354 21570 21585 31964 31964 0.05359369802999936 PAAPRLLKRE 10 Unmodified _PAAPRLLKRE_ 0 0 0 ENSG00000221869|ENST00000408965|CEBPD ENSG00000221869|ENST00000408965|CEBPD ENSG00000221869|ENST00000408965|CEBPD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33740234375 2 575.85639 1149.69823 0.2363 0.00013607 -0.39399 -0.00022688 -0.15769 -9.081E-05 576.3556283037058 151.46 0.18059 146.23 146.11 146.29 -5.2365 7 4 2 0 0 0 0.73842 1 29359 29359 7.2892 1.9923 1 2761500 32329 7763 21571 21586 31965 31965 0.1293649127956087 PAAPRWDRP 9 Unmodified _PAAPRWDRP_ 0 0 0 ENST00000596232.1_1_19:36036641-36037015:+|nuORF ENST00000596232.1_1_19:36036641-36037015:+|nuORF ENST00000596232.1_1_19:36036641-36037015:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 533.283057 1064.55156 NaN NaN NaN NaN NaN NaN NaN 165.87 1 160.89 160.39 161.39 -4.9811 0 0 0 0.23508 1 32459 32459 9.3474 1.4373 1 32330 11665 21572 21587 31966 31966 0.021868141144750552 PAAPSERLPQ 10 Unmodified _PAAPSERLPQ_ 0 0 0 TYK2|p.L202Pfs*105|1|0.26|ENSG00000105397|chr19:10366441-10366442|-/G|frameshift_variant TYK2|p.L202Pfs*105|1|0.26|ENSG00000105397|chr19:10366441-10366442|-/G|frameshift_variant TYK2|p.L202Pfs*105|1|0.26|ENSG00000105397|chr19:10366441-10366442|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2865600585938 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 173.79 1 168.91 168.41 169.41 -4.8859 0 0 0 0.22588 1 34565 34565 7.2892 0 1 32331 26539 21573 21588 31967 31967 0.03175957329199264 PAAPSLMRPF 10 Unmodified _PAAPSLMRPF_ 0 0 0 SFI1|p.T1043M|1|0.37|ENSG00000198089|chr22:31615107-31615107|C/T|missense_variant SFI1|p.T1043M|1|0.37|ENSG00000198089|chr22:31615107-31615107|C/T|missense_variant SFI1|p.T1043M|1|0.37|ENSG00000198089|chr22:31615107-31615107|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7926635742188 2 543.791869 1085.56919 NaN NaN NaN NaN NaN NaN NaN 169.58 1 164.79 164.29 165.29 -4.7898 0 0 0 0.22588 1 34362 34362 12.532 0 1 32332 25658 21574 21589 31968 31968 0.029823933251009294 PAAPSPVP 8 Unmodified _PAAPSPVP_ 0 0 0 REV__ENSG00000134245|ENST00000369684|WNT2B REV__ENSG00000134245|ENST00000369684|WNT2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 368.1703796386719 2 368.205421 734.39629 NaN NaN NaN NaN NaN NaN NaN 91.885 1 88.077 87.577 88.577 -3.8083 0 0 0 0.21486 1 17598 17598 2.8892 0 1 + 32333 16198 21575 21590 31969 31969 0.01846770260192443 PAAPTKALPCL 11 Unmodified _PAAPTKALPCL_ 0 0 0 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26708984375 2 541.307352 1080.60015 NaN NaN NaN NaN NaN NaN NaN 154.8 1 150.02 149.52 150.52 -4.7791 0 0 0 0.1931 1 30772 30772 20.415 3.3016 1 32334 3868 21576 21591 31970 31970 0.06307546639322936 PAAQETPFT 9 Unmodified _PAAQETPFT_ 0 0 0 REV__nc|ENSG00000204352|Q5T035|FAM120A2P REV__nc|ENSG00000204352|Q5T035|FAM120A2P MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23406982421875 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 174 1 169.21 168.71 169.71 -4.7898 0 0 0 0.23508 1 35524 35524 4.756 0.42677 1 + 32335 24239 21577 21592 31971 31971 -0.026547982361194045 PAAQETPFT 9 Unmodified _PAAQETPFT_ 0 0 0 REV__nc|ENSG00000204352|Q5T035|FAM120A2P REV__nc|ENSG00000204352|Q5T035|FAM120A2P MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2341003417969 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 164.34 1 159.29 158.79 159.79 -5.0446 0 0 0 0.23508 1 32042 32042 8.5933 0 1 + 32336 24239 21577 21592 31972 31972 -0.026547982361194045 PAAQHSKSIR 10 Unmodified _PAAQHSKSIR_ 0 0 0 REV__ENST00000525968.1_1_11:73984627-74015361:-|nuORF REV__ENST00000525968.1_1_11:73984627-74015361:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7749633789062 2 547.806897 1093.59924 NaN NaN NaN NaN NaN NaN NaN 155.34 1 150.09 149.59 150.59 -5.2526 0 0 0 0.22588 1 30122 30122 12.241 0.60036 1 + 32337 22685 21578 21593 31973 31973 0.056184683146511816 PAAQLTPPPA 10 Unmodified _PAAQLTPPPA_ 0 0 0 nc|ENSG00000161847|Q8IY67|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1 nc|ENSG00000161847|Q8IY67|RAVER1 nc|ENSG00000161847|Q8IY67|RAVER1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7693786621094 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 172.3 1 167.51 167.01 168.01 -4.7898 0 0 0 0.22569 1 35092 35092 15.847 2.3393 1 32338 5303 21579 21594 31974 31974 0.040980714145121055 PAAQLTPPPA 10 Unmodified _PAAQLTPPPA_ 0 0 0 nc|ENSG00000161847|Q8IY67|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1 nc|ENSG00000161847|Q8IY67|RAVER1 nc|ENSG00000161847|Q8IY67|RAVER1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7671813964844 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 174.19 1 169.31 168.81 169.81 -4.8845 0 0 0 0.22588 1 34603 34603 6.7232 0 1 32339 5303 21579 21594 31975 31975 0.040980714145121055 PAAQSPQLAP 10 Unmodified _PAAQSPQLAP_ 0 0 0 REV__nc|ENSG00000224807|Q6RFH8|DUX4L9 REV__nc|ENSG00000224807|Q6RFH8|DUX4L9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2640075683594 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 0.37773 1 11132 11132 32.305 0 1 39769000 + 32340 19882 21580 21595 31976 31976 0.02332883409144415 PAAQTAETTPG 11 Unmodified _PAAQTAETTPG_ 0 0 0 REV__EFNB1|p.S236Cfs*80|1|0.38|ENSG00000090776|chrX:68840320-68840327|CCAAGGTG/-|frameshift_variant REV__EFNB1|p.S236Cfs*80|1|0.38|ENSG00000090776|chrX:68840320-68840327|CCAAGGTG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.257568359375 2 522.253828 1042.4931 NaN NaN NaN NaN NaN NaN NaN 45.059 1 45.059 44.559 45.559 0 0 0 0 0.23264 1 8462 8462 6.2058 0.44535 1 + 32341 13788 21581 21596 31977 31977 -0.026443320413363836 PAARALDIC 9 Unmodified _PAARALDIC_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2459716796875 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 165.1 1 160.15 159.65 160.65 -4.9484 0 0 0 0.23411 1 32240 32240 13.508 4.1604 1 + 32342 22429 21582 21597 31978 31978 0.012935583655917071 PAARGVHAQ 9 Unmodified _PAARGVHAQ_ 0 0 0 ENST00000264245.8_2_3:119013519-119013672:+|nuORF ENST00000264245.8_2_3:119013519-119013672:+|nuORF ENST00000264245.8_2_3:119013519-119013672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7499084472656 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 144.77 1 144.77 144.27 145.27 0 0 0 0 0.23508 1 28928 28928 8.5933 2.8329 1 32343 8336 21583 21598 31979 31979 0.026625695346069733 PAARGVHAQ 9 Unmodified _PAARGVHAQ_ 0 0 0 ENST00000264245.8_2_3:119013519-119013672:+|nuORF ENST00000264245.8_2_3:119013519-119013672:+|nuORF ENST00000264245.8_2_3:119013519-119013672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 171.74 1 166.82 166.32 167.32 -4.9149 0 0 0 0.23508 1 34030 34030 12.532 3.9383 1 32344 8336 21583 21598 31980 31980 0.026625695346069733 PAARGVHAQ 9 Unmodified _PAARGVHAQ_ 0 0 0 ENST00000264245.8_2_3:119013519-119013672:+|nuORF ENST00000264245.8_2_3:119013519-119013672:+|nuORF ENST00000264245.8_2_3:119013519-119013672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74822998046875 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 26.775 1 24.852 24.352 25.352 -1.9222 0 0 0 0.23508 1 4448 4448 4.3292 1.44 1 32345 8336 21583 21598 31981 31981 0.026625695346069733 PAARLCLRPA 10 Unmodified _PAARLCLRPA_ 0 0 0 REV__CASKIN1|p.Q778Pfs*91|1|0.45|ENSG00000167971|chr16:2181035-2181036|-/G|frameshift_variant REV__CASKIN1|p.Q778Pfs*91|1|0.45|ENSG00000167971|chr16:2181035-2181036|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 534.287353515625 2 534.310761 1066.60697 NaN NaN NaN NaN NaN NaN NaN 173.6 1 168.7 168.2 169.2 -4.8977 0 0 0 0.22588 1 34475 34475 7.9102 0.62092 1 + 32346 13262 21584 21599 31982 31982 0.07632904310571575 PAARLEECR 9 Unmodified _PAARLEECR_ 0 0 0 REV__nc|ENSG00000115266|O95996-3|APC2 REV__nc|ENSG00000115266|O95996-3|APC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2816162109375 2 522.766383 1043.51821 0.19861 0.00010383 4.1721 0.002181 4.3707 0.0022849 523.2702418849061 147.75 0.14436 147.75 147.64 147.79 0 5 3 2 0 0 0 0.84208 1 29534 29534 3.9444 0 1 1533500 + 32347 15416 21585 21600 31983 31983 -0.0018055571974855411 PAARLQQSLC 10 Unmodified _PAARLQQSLC_ 0 0 0 REV__ENST00000422290.5_1_7:107204485-107205058:+|nuORF REV__ENST00000422290.5_1_7:107204485-107205058:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7718505859375 2 543.789858 1085.56516 NaN NaN NaN NaN NaN NaN NaN 160.85 1 160.85 160.35 161.35 0 0 0 0 0.22569 1 32299 32299 15.847 7.1018 1 + 32348 21520 21586 21601 31984 31984 0.025803038314052174 PAARLRPRQVP 11 Unmodified _PAARLRPRQVP_ 0 0 0 ENST00000415993.5_1_22:50689477-50689669:-|nuORF;ENST00000497483.1_1_22:50689302-50689819:-|nuORF ENST00000415993.5_1_22:50689477-50689669:-|nuORF ENST00000415993.5_1_22:50689477-50689669:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.8279418945312 2 630.886013 1259.75747 NaN NaN NaN NaN NaN NaN NaN 167.36 1 162.41 161.91 162.91 -4.948 0 0 0 0.23264 1 32913 32913 6.2058 0 1 32349 9618 21587 21602 31985 31985 0.13798387293741143 PAARPRAERA 10 Unmodified _PAARPRAERA_ 0 0 0 REV__ENST00000407796.6_1_14:105246507-105261997:-|nuORF REV__ENST00000407796.6_1_14:105246507-105261997:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7677612304688 2 547.812513 1093.61047 0.37273 0.00020419 0.76569 0.00041945 1.1384 0.00062364 547.8146443078242 161.11 0.1037 156.31 156.25 156.35 -4.7952 4 2 2 0 0 0 0.8888 1 32047 32047 3.9444 0 1 716200 + 32350 20762 21588 21603 31986 31986 0.06741290408785972 PAARPRVY 8 Unmodified _PAARPRVY_ 0 0 0 REV__ENSG00000170276|ENST00000304298|HSPB2 REV__ENSG00000170276|ENST00000304298|HSPB2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2585144042969 2 465.269419 928.524284 NaN NaN NaN NaN NaN NaN NaN 53.698 1 50.611 50.111 51.111 -3.0876 0 0 0 0.21486 1 9887 9887 6.3541 0.59368 1 + 32351 18151 21589 21604 31987 31987 0.05716330574091444 PAARRGMFLCL 11 Unmodified _PAARRGMFLCL_ 0 0 0 REV__ENST00000465703.5_1_6:31929724-31930734:+|nuORF REV__ENST00000465703.5_1_6:31929724-31930734:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 617.8131713867188 2 617.831003 1233.64745 NaN NaN NaN NaN NaN NaN NaN 171.96 1 167.17 166.67 167.67 -4.7898 0 0 0 0.23199 1 34998 34998 6.7232 0 1 + 32352 21954 21590 21605 31988 31988 0.039975026387082835 PAARRRRDWYK 11 Unmodified _PAARRRRDWYK_ 0 0 0 REV__ENSG00000189132|ENST00000329357|FAM47B REV__ENSG00000189132|ENST00000329357|FAM47B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 737.9095458984375 2 737.91055 1473.80655 NaN NaN NaN NaN NaN NaN NaN 163.21 1 158.42 157.92 158.92 -4.7898 0 0 0 0.23698 1 32521 32521 1.4819 0.15237 1 + 32353 19195 21591 21606 31989 31989 0.08859675582698401 PAARRRRRRRR 11 Unmodified _PAARRRRRRRR_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 754.2875366210938 2 753.980499 1505.94644 NaN NaN NaN NaN NaN NaN NaN 164.41 1 159.62 159.12 160.12 -4.7898 0 0 0 0.23698 1 32856 32856 0.30703 0.03801 1 + 32354 20437 21592 21607 31990 31990 0.21370897430415425 PAASAVKK 8 Unmodified _PAASAVKK_ 0 0 0 POTEB3|p.M8I|1|0.12|ENSG00000278522|chr15:21439988-21439988|C/T|missense_variant;POTEC|p.N269Kfs*14|1|0.06|ENSG00000183206|chr18:14537804-14537805|-/T|frameshift_variant;nc|ENSG00000278522|A0JP26-2|POTEB3;ENSG00000183206|ENST00000358970|POTEC;nc|ENSG00000278522|A0JP26-3|POTEB3;ENSG00000233917|ENST00000439682|POTEB;ENSG00000230031|ENST00000454856|POTEB2;ENSG00000278522|ENST00000611217|POTEB3 POTEB3|p.M8I|1|0.12|ENSG00000278522|chr15:21439988-21439988|C/T|missense_variant POTEB3|p.M8I|1|0.12|ENSG00000278522|chr15:21439988-21439988|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 386.2386474609375 2 386.239796 770.465038 NaN NaN NaN NaN NaN NaN NaN 63.76 1 63.76 63.26 64.26 0 0 0 0 0.21486 1 12266 12266 2.5775 0 1 32355 6834 21593 21608 31991 31991 0.0706243455990716 PAASENYMRL 10 Unmodified _PAASENYMRL_ 0 0 0 ENSG00000188342|ENST00000340473|GTF2F2 ENSG00000188342|ENST00000340473|GTF2F2 ENSG00000188342|ENST00000340473|GTF2F2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.325927734375 2 576.279323 1150.54409 NaN NaN NaN NaN NaN NaN NaN 163.5 1 158.71 158.21 159.21 -4.7898 0 0 0 0.22588 1 32597 32597 7.9102 0 1 32356 7166 21594 21609 31992 31992 -0.0251570626812736 PAASIIYPNP 10 Unmodified _PAASIIYPNP_ 0 0 0 REV__nc|ENSG00000055917|Q8TB72-2|PUM2 REV__nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279296875 2 521.782025 1041.5495 0.20707 0.00010804 -4.2013 -0.0021921 -3.9942 -0.0020841 521.7809528215953 135.47 0.10339 135.47 135.4 135.5 0 4 2 2 0 0 0 0.71097 1 26840 26840 10.074 2.1638 1 1677100 + 32357 14118 21595 21610 31993 31993 0.030383405859993218 PAASLEFG 8 Unmodified _PAASLEFG_ 0 0 0 ENST00000413674.1_1_17:2118973-2119244:-|nuORF ENST00000413674.1_1_17:2118973-2119244:-|nuORF ENST00000413674.1_1_17:2118973-2119244:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 396.1659240722656 2 396.200336 790.386119 NaN NaN NaN NaN NaN NaN NaN 60.007 1 60.007 59.507 60.507 0 0 0 0 0.21486 1 11503 11503 2.8892 0 1 32358 9593 21596 21611 31994 31994 -0.01745837465045952 PAASLVTIPLL 11 Unmodified _PAASLVTIPLL_ 0 0 0 REV__ENST00000433117.6_1_22:39910519-39910582:+|nuORF REV__ENST00000433117.6_1_22:39910519-39910582:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7881469726562 2 547.844625 1093.6747 NaN NaN NaN NaN NaN NaN NaN 44.439 1 41.673 41.173 42.173 -2.7661 0 0 0 0.23264 1 8044 8044 6.2058 0.97511 1 + 32359 21640 21597 21612 31995 31995 0.13160632722383525 PAASPEQLSF 10 Unmodified _PAASPEQLSF_ 0 0 0 nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB;nc|ENSG00000180900|Q14160-2|SCRIB;ENST00000525051.5_1_8:144874301-144875226:-|nuORF nc|ENSG00000180900|Q14160|SCRIB nc|ENSG00000180900|Q14160|SCRIB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6976928710938 2 523.761289 1045.50803 0.31292 0.0001639 0.22857 0.00011972 0.54149 0.00028361 524.2613726697576 140.09 0.17596 135.24 135.12 135.3 -4.8492 5 4 2 0 0 0 0.8888 1 27011 27011 3.9444 0 1 1838600 32360 6699 21598 21613 31996 31996 -0.01290840173351171 PAASPNRLPG 10 Unmodified _PAASPNRLPG_ 0 0 0 ENST00000315927.8_1_1:207223059-207224371:-|nuORF ENST00000315927.8_1_1:207223059-207224371:-|nuORF ENST00000315927.8_1_1:207223059-207224371:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2689514160156 2 490.269616 978.524678 NaN NaN NaN NaN NaN NaN NaN 164.19 1 159.15 158.65 159.65 -5.0446 0 0 0 0.22588 1 32003 32003 7.2892 1.5288 1 32361 8679 21599 21614 31997 31997 0.03455705503290574 PAASRLTATA 10 Unmodified _PAASRLTATA_ 0 0 0 ENST00000564397.5_1_16:5075481-5078139:-|nuORF ENST00000564397.5_1_16:5075481-5078139:-|nuORF ENST00000564397.5_1_16:5075481-5078139:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2459411621094 2 479.769448 957.524344 -0.36485 -0.00017504 0.47422 0.00022752 0.10937 5.2474E-05 479.7696323815857 24.024 0.52181 22.172 21.95 22.472 -1.8523 35 14 4 0 0 0 0.57735 1 3867 3867 20.454 3.5113 1 7067300 32362 11342 21600 21615 31998 31998 0.043882857834205424 PAASRLTATA 10 Unmodified _PAASRLTATA_ 0 0 0 ENST00000564397.5_1_16:5075481-5078139:-|nuORF ENST00000564397.5_1_16:5075481-5078139:-|nuORF ENST00000564397.5_1_16:5075481-5078139:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.769448 957.524344 -0.032216 -1.5456E-05 0.16992 8.1521E-05 0.1377 6.6064E-05 479.76947515092115 22.384 0.52377 22.384 22.155 22.679 0 0.10407 0.00016829 NaN 20.454 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 12861000 32363 11342 21600 21615 0.043882857834205424 PAASRLTATA 10 Unmodified _PAASRLTATA_ 0 0 0 ENST00000564397.5_1_16:5075481-5078139:-|nuORF ENST00000564397.5_1_16:5075481-5078139:-|nuORF ENST00000564397.5_1_16:5075481-5078139:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.769448 957.524344 0.90618 0.00043476 -0.81376 -0.00039042 0.092421 4.4341E-05 479.76902377490995 23.855 0.41536 22.302 22.081 22.497 -1.5532 0.022324 -0.00077558 NaN 20.454 37 11 4 NaN NaN NaN NaN 0 NaN NaN 0 11381000 32364 11342 21600 21615 0.043882857834205424 PAASRLTATA 10 Unmodified _PAASRLTATA_ 0 0 0 ENST00000564397.5_1_16:5075481-5078139:-|nuORF ENST00000564397.5_1_16:5075481-5078139:-|nuORF ENST00000564397.5_1_16:5075481-5078139:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.769448 957.524344 -0.019137 -9.1812E-06 0.13801 6.6212E-05 0.11887 5.7031E-05 479.7695177818619 23.763 0.40834 22.261 22.058 22.466 -1.5024 -0.018756 0.00013768 NaN 20.454 35 11 4 NaN NaN NaN NaN 0 NaN NaN 0 8392000 32365 11342 21600 21615 0.043882857834205424 PAASTMSIFR 10 Unmodified _PAASTMSIFR_ 0 0 0 REV__nc|ENSG00000284753|P0DPD7|EEF1AKMT4 REV__nc|ENSG00000284753|P0DPD7|EEF1AKMT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2782592773438 2 540.778959 1079.54336 0.38131 0.0002062 -0.84604 -0.00045752 -0.46473 -0.00025131 541.281293420441 160.5 0.20787 155.7 155.58 155.79 -4.7952 8 5 2 0 0 0 0.71097 1 31900 31900 10.074 0.6908 1 2076300 + 32366 24317 21601 21616 31999 31999 0.006774990828262162 PAASTMSIFR 10 Unmodified _PAASTMSIFR_ 0 0 0 REV__nc|ENSG00000284753|P0DPD7|EEF1AKMT4 REV__nc|ENSG00000284753|P0DPD7|EEF1AKMT4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.778959 1079.54336 0.38131 0.0002062 -0.84604 -0.00045752 -0.46473 -0.00025131 541.281293420441 160.5 0.20787 155.7 155.58 155.79 -4.7952 0 0 NaN 10.074 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2076300 + 32367 24317 21601 21616 0.006774990828262162 PAATCPPLPSQ 11 Unmodified _PAATCPPLPSQ_ 0 0 0 REV__ENST00000404534.1_1_6:138026562-138026850:-|nuORF REV__ENST00000404534.1_1_6:138026562-138026850:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.270751953125 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 168.6 1 163.73 163.23 164.23 -4.873 0 0 0 0.15347 1 33244 33244 27.629 2.2295 1 + 32368 21377 21602 21617 32000 32000 -0.009662071540560646 PAATCTIPAA 10 Unmodified _PAATCTIPAA_ 0 0 0 REV__GRN|p.L187Wfs*69|1|0.34|ENSG00000030582|chr17:44350534-44350534|C/-|frameshift_variant REV__GRN|p.L187Wfs*69|1|0.34|ENSG00000030582|chr17:44350534-44350534|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2352600097656 2 458.233853 914.453153 NaN NaN NaN NaN NaN NaN NaN 161.38 1 161.38 160.88 161.88 0 0 0 0 0.22561 1 32413 32413 16.942 3.4344 1 + 32369 23596 21603 21618 32001 32001 -0.0074955024559812955 PAATNWFLKTF 11 Unmodified _PAATNWFLKTF_ 0 0 0 REV__ENSG00000139865|ENST00000553443|TTC6 REV__ENSG00000139865|ENST00000553443|TTC6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 648.3466186523438 2 648.342781 1294.67101 NaN NaN NaN NaN NaN NaN NaN 162.41 1 162.41 161.91 162.91 0 0 0 0 0.23594 1 32653 32653 3.5965 0 1 + 32370 16547 21604 21619 32002 32002 0.03545962948487613 PAATRCFTL 9 Unmodified _PAATRCFTL_ 0 0 0 ENST00000572382.5_1_17:4846799-4848308:+|nuORF ENST00000572382.5_1_17:4846799-4848308:+|nuORF ENST00000572382.5_1_17:4846799-4848308:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27252197265625 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 126.67 1 122.05 121.55 122.55 -4.6172 0 0 0 0.20628 1 24977 24977 21.747 0 1 32371 11432 21605 21620 32003 32003 0.005578448826440763 PAATRRGKPK 10 Unmodified _PAATRRGKPK_ 0 0 0 REV__nc|ENSG00000136002|Q9NR80-4|ARHGEF4 REV__nc|ENSG00000136002|Q9NR80-4|ARHGEF4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2719116210938 2 541.333082 1080.65161 NaN NaN NaN NaN NaN NaN NaN 163.96 1 163.96 163.46 164.46 0 0 0 0 0.22583 1 33100 33100 13.906 2.2658 1 + 32372 24050 21606 21621 32004 32004 0.11451051448261751 PAATRWSWWHW 11 Unmodified _PAATRWSWWHW_ 0 0 0 ENST00000508784.5_1_4:146824055-146859708:-|nuORF ENST00000508784.5_1_4:146824055-146859708:-|nuORF ENST00000508784.5_1_4:146824055-146859708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.404541015625 2 742.354545 1482.69454 NaN NaN NaN NaN NaN NaN NaN 140.61 1 140.61 140.11 141.11 0 0 0 0 0.23594 1 28001 28001 3.5965 0.60125 1 32373 10719 21607 21622 32005 32005 -0.02750178494306965 PAATSGCRRY 10 Unmodified _PAATSGCRRY_ 0 0 0 ENSG00000132744|ENST00000255082|ACY3 ENSG00000132744|ENST00000255082|ACY3 ENSG00000132744|ENST00000255082|ACY3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2752075195312 2 541.264007 1080.51346 NaN NaN NaN NaN NaN NaN NaN 111.08 1 106.59 106.09 107.09 -4.4915 0 0 0 0.22526 1 21319 21319 21.747 1.3321 1 32374 3758 21608 21623 32006 32006 -0.023574398624987225 PAAVAPFLPSL 11 Unmodified _PAAVAPFLPSL_ 0 0 0 REV__ENST00000358536.8_1_3:48466741-48470855:-|nuORF REV__ENST00000358536.8_1_3:48466741-48470855:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.260498046875 2 541.815867 1081.61718 0.32413 0.00017562 1.918 0.0010392 2.2421 0.0012148 541.8163254113929 146.99 0.20898 146.99 146.88 147.08 0 7 5 2 0 0 0 0.83635 1 29402 29402 13.042 5.1323 1 2263600 + 32375 20837 21609 21624 32007 32007 0.07963790516805602 PAAVPTGCQRS 11 Unmodified _PAAVPTGCQRS_ 0 0 0 REV__ENST00000513117.1_1_5:6633544-6656205:+|nuORF REV__ENST00000513117.1_1_5:6633544-6656205:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7713012695312 2 543.771665 1085.52878 NaN NaN NaN NaN NaN NaN NaN 14.27 1 14.27 13.77 14.77 0 0 0 0 0.23018 1 2115 2115 8.1555 1.4324 1 + 32376 20284 21610 21625 32008 32008 -0.010565730653070204 PAAVRKLHKKP 11 Unmodified _PAAVRKLHKKP_ 0 0 0 REV__ENST00000373626.4_1_X:71494279-71497060:-|nuORF REV__ENST00000373626.4_1_X:71494279-71497060:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7750244140625 2 622.901131 1243.78771 NaN NaN NaN NaN NaN NaN NaN 171.95 1 167.04 166.54 167.54 -4.9149 0 0 0 0.23264 1 34085 34085 6.2058 2.9245 1 + 32377 15973 21611 21626 32009 32009 0.17556745958927422 PAAVRSPAQI 10 Unmodified _PAAVRSPAQI_ 0 0 0 CON__P02668 CON__P02668 CON__P02668 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 505.1910705566406 2 505.293091 1008.57163 NaN NaN NaN NaN NaN NaN NaN 164.32 1 164.32 163.82 164.82 0 0 0 0 0.22588 1 33215 33215 11.64 0 1 + 32378 654 21612 21627 32010 32010 0.06768565054414921 PAAVVLMKLLP 11 Unmodified _PAAVVLMKLLP_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3389282226562 2 576.36467 1150.71479 NaN NaN NaN NaN NaN NaN NaN 174.53 1 169.64 169.14 170.14 -4.8916 0 0 0 0.23199 1 34748 34748 6.7232 0.51738 1 32379 6448 21613 21628 32011 32011 0.14545856121321776 PAAWRLLC 8 Unmodified _PAAWRLLC_ 0 0 0 REV__nc|ENSG00000106123|O15197-2|EPHB6 REV__nc|ENSG00000106123|O15197-2|EPHB6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2569274902344 2 465.254923 928.495293 NaN NaN NaN NaN NaN NaN NaN 162.79 1 158 157.5 158.5 -4.7898 0 0 0 0.21486 1 32407 32407 10.183 0.83596 1 + 32380 15033 21614 21629 32012 32012 0.028184699534335778 PAAWTIRWS 9 Unmodified _PAAWTIRWS_ 0 0 0 REV__NTF3|p.P115Rfs*45|1|0.2|ENSG00000185652|chr12:5494554-5494554|C/-|frameshift_variant REV__NTF3|p.P115Rfs*45|1|0.2|ENSG00000185652|chr12:5494554-5494554|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7916259765625 2 544.287808 1086.56106 0.1098 5.9761E-05 -0.32029 -0.00017433 -0.2105 -0.00011457 544.7890887296749 142.17 0.89026 137.15 137 137.89 -5.0261 31 25 2 0 0 0 0.79204 1 27381 27381 3.9444 0 1 2075400 + 32381 24386 21615 21630 32013 32013 0.0212458239998341 PAAYDWCVY 9 Unmodified _PAAYDWCVY_ 0 0 0 REV__nc|ENSG00000010310|P48546-2|GIPR REV__nc|ENSG00000010310|P48546-2|GIPR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7706909179688 2 544.23131 1086.44807 0.75772 0.00041237 3.4097 0.0018557 4.1674 0.002268 544.7337939489755 78.833 1.0029 78.833 78.579 79.582 0 42 28 2 0 0 0 0.67345 1 15471 15471 8.5933 0 1 1728300 + 32382 13920 21616 21631 32014 32014 -0.09169854108222353 PAAYLMHL 8 Unmodified _PAAYLMHL_ 0 0 0 REV__TMBIM1|p.L256P|1|0.13|ENSG00000135926|chr2:218276048-218276048|A/G|missense_variant REV__TMBIM1|p.L256P|1|0.13|ENSG00000135926|chr2:218276048-218276048|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2398681640625 2 458.241481 914.468409 NaN NaN NaN NaN NaN NaN NaN 74.14 1 70.546 70.046 71.046 -3.594 0 0 0 0.21486 1 14076 14076 11.114 0 1 + 32383 24809 21617 21632 32015 32015 0.007753613422437411 PACCCPECC 9 Unmodified _PACCCPECC_ 0 0 0 REV__ENSG00000221859|ENST00000380095|KRTAP10-10 REV__ENSG00000221859|ENST00000380095|KRTAP10-10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.08785 927.241722 NaN NaN NaN NaN NaN NaN NaN 141.13 1 136.14 135.64 136.64 -4.9877 0 0 0 0.19631 1 27173 27173 0.073264 0.023471 1 + 32384 19708 21618 21633 32016 32016 -0.22480952866521875 PACCNEENSL 10 Unmodified _PACCNEENSL_ 0 0 0 REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 540.1415405273438 2 540.210249 1078.40594 NaN NaN NaN NaN NaN NaN NaN 164.21 1 159.14 158.64 159.64 -5.0648 0 0 0 0.22588 1 32006 32006 7.2892 2.5332 1 + 32385 16659 21619 21634 32017 32017 -0.13012197578905216 PACCSPGC 8 Unmodified _PACCSPGC_ 0 0 0 REV__ENSG00000254997|ENST00000528743|KRTAP5-9 REV__ENSG00000254997|ENST00000528743|KRTAP5-9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 369.2940368652344 2 369.124402 736.234252 NaN NaN NaN NaN NaN NaN NaN 153.59 1 148.83 148.33 149.33 -4.7684 0 0 0 0.21486 1 30525 30525 0.79363 0 1 + 32386 19851 21620 21635 32018 32018 -0.14441601080272903 PACCSPGC 8 Unmodified _PACCSPGC_ 0 0 0 REV__ENSG00000254997|ENST00000528743|KRTAP5-9 REV__ENSG00000254997|ENST00000528743|KRTAP5-9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 369.29449462890625 2 369.124402 736.234252 NaN NaN NaN NaN NaN NaN NaN 153.92 1 148.7 148.2 149.2 -5.2209 0 0 0 0.21486 1 29836 29836 0.79363 0 1 + 32387 19851 21620 21635 32019 32019 -0.14441601080272903 PACECSGDEP 10 Unmodified _PACECSGDEP_ 0 0 0 REV__nc|ENSG00000157890|A6BM72-3|MEGF11 REV__nc|ENSG00000157890|A6BM72-3|MEGF11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 504.1770324707031 2 504.175875 1006.3372 NaN NaN NaN NaN NaN NaN NaN 174.04 1 169.15 168.65 169.65 -4.8916 0 0 0 0.22588 1 34630 34630 1.8442 0 1 + 32388 17313 21621 21636 32020 32020 -0.16571861878605887 PACGGAGG 8 Unmodified _PACGGAGG_ 0 0 0 TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant;ENSG00000119283|ENST00000366653|TRIM67 TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.26123046875 1 589.239872 588.232595 0.4091 0.00024106 0.35718 0.00021046 0.76628 0.00045152 589.2439986652977 119.25 0.10333 114.78 114.71 114.82 -4.467 4 2 2 0 0 0 8448 1 22959 22959 0.0082765 0 1 623790 32389 3065 21622 21637 32021 32021 -0.07799150782352626 PACNWQNWS 9 Unmodified _PACNWQNWS_ 0 0 0 REV__GLYAT|p.V294A|1|0.28|ENSG00000149124|chr11:58709776-58709776|A/G|missense_variant REV__GLYAT|p.V294A|1|0.28|ENSG00000149124|chr11:58709776-58709776|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 553.228271484375 2 553.229633 1104.44471 NaN NaN NaN NaN NaN NaN NaN 167.49 1 162.6 162.1 163.1 -4.8916 0 0 0 0.23508 1 32948 32948 7.9102 0.62092 1 + 32390 23580 21623 21638 32022 32022 -0.1033310416223685 PACPMGSP 8 Unmodified _PACPMGSP_ 0 0 0 TSC22D4|p.P40Rfs*36|1|0.45|ENSG00000166925|chr7:100477920-100477920|G/-|frameshift_variant TSC22D4|p.P40Rfs*36|1|0.45|ENSG00000166925|chr7:100477920-100477920|G/-|frameshift_variant TSC22D4|p.P40Rfs*36|1|0.45|ENSG00000166925|chr7:100477920-100477920|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 380.16925048828125 2 380.161842 758.309131 NaN NaN NaN NaN NaN NaN NaN 18.308 1 18.308 17.808 18.808 0 0 0 0 0.23366 1 2939 2939 0.68139 0.054566 1 32391 26530 21624 21639 32023 32023 -0.07969095277383076 PACWGSCCC 9 Unmodified _PACWGSCCC_ 0 0 0 ENST00000569969.5_2_16:28996610-28996802:+|nuORF ENST00000569969.5_2_16:28996610-28996802:+|nuORF ENST00000569969.5_2_16:28996610-28996802:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24969482421875 2 465.142269 928.269985 NaN NaN NaN NaN NaN NaN NaN 99.611 1 95.342 94.842 95.842 -4.2692 0 0 0 0.19622 1 19042 19042 0.96228 0.96228 1 32392 11410 21625 21640 32024 32024 -0.19701886894927156 PADIEEESPEE 11 Unmodified _PADIEEESPEE_ 0 0 0 REV__ENSG00000165732|ENST00000354185|DDX21 REV__ENSG00000165732|ENST00000354185|DDX21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7568969726562 2 622.76188 1243.50921 NaN NaN NaN NaN NaN NaN NaN 172.39 1 167.51 167.01 168.01 -4.881 0 0 0 0.23324 1 34217 34217 5.7319 0 1 + 32393 17799 21626 21641 32025 32025 -0.10280715385715666 PADIVYEDDD 10 Unmodified _PADIVYEDDD_ 0 0 0 tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1 tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1 tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3189697265625 2 576.240583 1150.46661 NaN NaN NaN NaN NaN NaN NaN 171.86 1 166.94 166.44 167.44 -4.9149 0 0 0 0.22588 1 34060 34060 6.7232 0.51738 1 32394 26019 21627 21642 32026 32026 -0.10260065723332445 PADIVYEDDD 10 Unmodified _PADIVYEDDD_ 0 0 0 tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1 tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1 tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3378295898438 2 576.240583 1150.46661 NaN NaN NaN NaN NaN NaN NaN 171.9 1 166.98 166.48 167.48 -4.9149 0 0 0 0.22588 1 34073 34073 6.7232 0.51738 1 32395 26019 21627 21642 32027 32027 -0.10260065723332445 PADIVYEDDD 10 Unmodified _PADIVYEDDD_ 0 0 0 tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1 tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1 tr|U7SNB3|U7SNB3_FUSNUBis(5'-nucleosidyl)-tetraphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01881PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3236083984375 2 576.240583 1150.46661 NaN NaN NaN NaN NaN NaN NaN 172.07 1 167.19 166.69 167.69 -4.8804 0 0 0 0.22588 1 34125 34125 6.7232 0.51738 1 32396 26019 21627 21642 32028 32028 -0.10260065723332445 PADLLALILLV 11 Unmodified _PADLLALILLV_ 0 0 0 nc|ENSG00000289758|Q92902-3|HPS1;nc|ENSG00000289758|Q92902-2|HPS1;nc|ENSG00000289758|Q92902-4|HPS1;ENSG00000107521|ENST00000361490|HPS1 nc|ENSG00000289758|Q92902-3|HPS1 nc|ENSG00000289758|Q92902-3|HPS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3118286132812 2 575.875925 1149.7373 NaN NaN NaN NaN NaN NaN NaN 174.44 1 174.44 173.94 174.94 0 0 0 0 0.22943 1 36109 36109 8.7454 4.4162 1 32397 2425 21628 21643 32029 32029 0.16841778790558237 PADLPKLVEGL 11 Unmodified _PADLPKLVEGL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3358764648438 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 171.8 1 171.8 171.3 172.3 0 0 0 0 0.22501 1 35424 35424 12.241 2.1667 1 32398 5830 21629 21644 32030 32030 0.09047140854363533 PADLQDEPGPL 11 Unmodified _PADLQDEPGPL_ 0 0 0 REV__ENST00000369682.4_1_X:153694069-153694330:+|nuORF REV__ENST00000369682.4_1_X:153694069-153694330:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3330688476562 2 576.282586 1150.55062 NaN NaN NaN NaN NaN NaN NaN 169.75 1 169.75 169.25 170.25 0 0 0 0 0.23018 1 34852 34852 8.1555 0.24537 1 + 32399 20967 21630 21645 32031 32031 -0.018634898357504426 PADSPDNEA 9 Unmodified _PADSPDNEA_ 0 0 0 REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.223876953125 2 458.188154 914.361755 NaN NaN NaN NaN NaN NaN NaN 72.938 1 69.627 69.127 70.127 -3.3107 0 0 0 0.18274 1 14216 14216 0.12781 0 1 + 32400 15201 21631 21646 32032 32032 -0.09885142409234504 PADSPDNEA 9 Unmodified _PADSPDNEA_ 0 0 0 REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.238037109375 2 458.188154 914.361755 NaN NaN NaN NaN NaN NaN NaN 72.995 1 69.684 69.184 70.184 -3.3107 0 0 0 0.21848 1 14228 14228 18.135 1.1927 1 + 32401 15201 21631 21646 32033 32033 -0.09885142409234504 PADSPDNEA 9 Unmodified _PADSPDNEA_ 0 0 0 REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2388610839844 2 458.188154 914.361755 NaN NaN NaN NaN NaN NaN NaN 72.956 1 69.418 68.918 69.918 -3.5385 0 0 0 0.23508 1 13835 13835 11.64 3.047 1 + 32402 15201 21631 21646 32034 32034 -0.09885142409234504 PAECAMGM 8 Unmodified _PAECAMGM_ 0 0 0 REV__ENSG00000205922|ENST00000382349|ONECUT3 REV__ENSG00000205922|ENST00000382349|ONECUT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.21197509765625 2 405.15316 808.291767 0.034442 1.3954E-05 1.147 0.0004647 1.1814 0.00047866 405.1533932441793 29.132 0.55368 29.132 28.845 29.398 0 19 15 2 0 0 0 1.0268 1 5250 5250 0 0 1 956250 + 32403 19606 21632 21647 32035 32035 -0.12004758874684285 PAECGCCC 8 Unmodified _PAECGCCC_ 0 0 0 P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 784.6896362304688 1 785.208514 784.201237 0.75303 0.00059129 3.8881 0.003053 4.6411 0.0036442 785.2133430732184 166.25 0.13243 161.46 161.35 161.49 -4.7898 5 3 2 0 0 0 1.0268 1 33361 33361 0.79363 0 1 27374000 32404 12745 21633 21648 32036 32036 -0.1994955119463384 PAEDMSRV 8 Unmodified _PAEDMSRV_ 0 0 0 REV__ENSG00000037637|ENST00000375592|FBXO42 REV__ENSG00000037637|ENST00000375592|FBXO42 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.1446838378906 3 302.144615 903.412016 NaN NaN NaN NaN NaN NaN NaN 37.775 1 35.437 34.937 35.937 -2.3375 0 0 0 0.21486 1 6697 6697 0.45834 0 1 + 32405 14035 21634 21649 32037 32037 -0.04355311285064545 PAEGALEE 8 Unmodified _PAEGALEE_ 0 0 0 ENSG00000189139|ENST00000340446|FSCB ENSG00000189139|ENST00000340446|FSCB ENSG00000189139|ENST00000340446|FSCB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 408.1925964355469 2 408.192708 814.370863 NaN NaN NaN NaN NaN NaN NaN 50.243 1 50.243 49.743 50.743 0 0 0 0 0.21486 1 9512 9512 5.7604 0 1 32406 7217 21635 21650 32038 32038 -0.04374749052908555 PAEGRVTEA 9 Unmodified _PAEGRVTEA_ 0 0 0 REV__nc|ENSG00000136002|Q9NR80-4|ARHGEF4;REV__ENSG00000136002|ENST00000409359|ARHGEF4 REV__nc|ENSG00000136002|Q9NR80-4|ARHGEF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2554626464844 2 465.237981 928.461409 0.42954 0.00019984 1.0221 0.00047552 1.4516 0.00067536 465.2384906816404 32.875 0.83079 30.66 30.351 31.182 -2.2158 33 23 2 0 0 0 0.44932 1 5743 5743 22.736 22.736 1 639020 + 32407 24050;16306 21636 21651 32039 32039 -0.005682800046201919 PAEHYRPA 8 Unmodified _PAEHYRPA_ 0 0 0 REV__ENST00000540594.5_1_15:34439399-34502250:-|nuORF REV__ENST00000540594.5_1_15:34439399-34502250:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1679382324219 3 314.159365 939.456264 NaN NaN NaN NaN NaN NaN NaN 94.252 1 94.252 93.752 94.752 0 0 0 0 0.21486 1 18455 18455 1.8442 0 1 + 32408 22857 21637 21652 32040 32040 -0.015885390765788543 PAEIYRLT 8 Unmodified _PAEIYRLT_ 0 0 0 REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7705383300781 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 14.027 1 12.854 12.354 13.354 -1.173 0 0 0 0.21486 1 1868 1868 5.7604 0 1 + 32409 16717 21638 21653 32041 32041 0.04098071414500737 PAEKPKQSDPF 11 Unmodified _PAEKPKQSDPF_ 0 0 0 ZFHX4|p.S2419F|1|0.33|ENSG00000091656|chr8:76854177-76854177|C/T|missense_variant ZFHX4|p.S2419F|1|0.33|ENSG00000091656|chr8:76854177-76854177|C/T|missense_variant ZFHX4|p.S2419F|1|0.33|ENSG00000091656|chr8:76854177-76854177|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7593994140625 2 622.319502 1242.62445 NaN NaN NaN NaN NaN NaN NaN 41.63 1 39.041 38.541 39.541 -2.5889 0 0 0 0.18831 1 7475 7475 21.537 5.3879 1 32410 26598 21639 21654 32042 32042 0.012844783265336446 PAEKPKQSDPF 11 Unmodified _PAEKPKQSDPF_ 0 0 0 ZFHX4|p.S2419F|1|0.33|ENSG00000091656|chr8:76854177-76854177|C/T|missense_variant ZFHX4|p.S2419F|1|0.33|ENSG00000091656|chr8:76854177-76854177|C/T|missense_variant ZFHX4|p.S2419F|1|0.33|ENSG00000091656|chr8:76854177-76854177|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7808837890625 2 622.319502 1242.62445 NaN NaN NaN NaN NaN NaN NaN 41.838 1 39.232 38.732 39.732 -2.606 0 0 0 0.18831 1 7514 7514 21.537 5.3879 1 32411 26598 21639 21654 32043 32043 0.012844783265336446 PAENTVFYSP 10 Unmodified _PAENTVFYSP_ 0 0 0 REV__ENSG00000182601|ENST00000331351|HS3ST4 REV__ENSG00000182601|ENST00000331351|HS3ST4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 562.764892578125 2 562.766571 1123.51859 NaN NaN NaN NaN NaN NaN NaN 168.17 1 163.38 162.88 163.88 -4.7898 0 0 0 0.22588 1 33979 33979 10.074 0.6908 1 + 32412 18790 21640 21655 32044 32044 -0.03822857518912315 PAEPAFLA 8 Unmodified _PAEPAFLA_ 0 0 0 ENSG00000163807|ENST00000296121|KIAA1143 ENSG00000163807|ENST00000296121|KIAA1143 ENSG00000163807|ENST00000296121|KIAA1143 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3480834960938 1 815.429781 814.422505 0.58154 0.00047421 -0.25208 -0.00020555 0.32947 0.00026866 815.4295798251628 125.59 0.60724 120.99 120.68 121.29 -4.5984 21 16 2 0 0 0 0.64227 1 24815 24815 19.439 4.8573 1 1966800 32413 5467 21641 21656 32045 32045 0.007870394316682905 PAEPAFLA 8 Unmodified _PAEPAFLA_ 0 0 0 ENSG00000163807|ENST00000296121|KIAA1143 ENSG00000163807|ENST00000296121|KIAA1143 ENSG00000163807|ENST00000296121|KIAA1143 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3547973632812 1 815.429781 814.422505 0.38953 0.00031764 0.22718 0.00018525 0.61672 0.00050289 815.4298240043837 125.58 0.65846 120.93 120.6 121.26 -4.6495 29 18 2 0 0 0 0.13334 1 24188 24188 56.541 10.791 1 3121000 32414 5467 21641 21656 32046 32046 0.007870394316682905 PAEQAATP 8 Unmodified _PAEQAATP_ 0 0 0 nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML;nc|ENSG00000140464|P29590-13|PML nc|ENSG00000140464|P29590-3|PML nc|ENSG00000140464|P29590-3|PML MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3873291015625 1 784.383559 783.376283 0.48026 0.00037671 0.37328 0.0002928 0.85354 0.0006695 784.3837993528858 22.557 0.66869 22.557 22.258 22.927 0 37 18 3 0 0 0 0.23433 1 3792 3792 42.095 4.1206 1 3659400 32415 12355 21642 21657 32047 32047 -0.024070254704270155 PAFALEKPG 9 Unmodified _PAFALEKPG_ 0 0 0 ENSG00000164309|ENST00000446378|CMYA5;ENST00000506603.5_1_5:79058805-79095436:+|nuORF ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25885009765625 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 44.266 1 44.266 43.766 44.766 0 0 0 0 0.23411 1 8301 8301 13.508 4.1604 1 32416 5532 21643 21658 32048 32048 0.03470686385810495 PAFCDHCGE 9 Unmodified _PAFCDHCGE_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;ENST00000597088.1_1_19:47214155-47217219:-|nuORF;PRKD1|p.R202Pfs*22|1|0.09|ENSG00000184304|chr14:29663791-29663792|-/GGTATGG|frameshift_variant;PRKD1|p.S448Vfs*28|1|0.08|ENSG00000184304|chr14:29632913-29632919|ATTTGCT/-|frameshift_variant;PRKD2|p.D633Tfs*5|1|0.38|ENSG00000105287|chr19:46689611-46689611|C/-|frameshift_variant;PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant;ENSG00000184304|ENST00000331968|PRKD1 ENSG00000105287|ENST00000291281|PRKD2;PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant ENSG00000105287|ENST00000291281|PRKD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 489.67523193359375 2 489.675845 977.337137 NaN NaN NaN NaN NaN NaN NaN 164.21 1 164.21 163.71 164.71 0 0 0 0 0.19634 1 33180 33180 0.0033805 0 1 32417 2294;6902 21644 21659 32049 32049 -0.15243817087957723 PAFFVMTLWFT 11 Unmodified _PAFFVMTLWFT_ 0 0 0 ENST00000513372.5_1_4:2256680-2256926:-|nuORF ENST00000513372.5_1_4:2256680-2256926:-|nuORF ENST00000513372.5_1_4:2256680-2256926:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76422119140625 3 453.898382 1358.67332 NaN NaN NaN NaN NaN NaN NaN 13.895 1 12.722 12.222 13.222 -1.173 0 0 0 0.23698 1 1840 1840 0.45452 0 1 32418 10762 21645 21660 32050 32050 0.008326753619485316 PAFLNMRKRK 10 Unmodified _PAFLNMRKRK_ 0 0 0 CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;ENSG00000184661|ENST00000330560|CDCA2 CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7705688476562 2 630.871517 1259.72848 NaN NaN NaN NaN NaN NaN NaN 174.4 1 174.4 173.9 174.9 0 0 0 0 2.8426 1 36100 36100 0.26539 0 1 32419 458 21646 21661 32051 32051 0.10900526673094646 PAFLTLVLSGY 11 Unmodified _PAFLTLVLSGY_ 0 0 0 REV__TMEM140|p.Q99Sfs*5|2|0.11|ENSG00000146859|chr7:135164731-135164731|C/-|frameshift_variant REV__TMEM140|p.Q99Sfs*5|2|0.11|ENSG00000146859|chr7:135164731-135164731|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2764892578125 2 590.834257 1179.65396 0.35011 0.00020686 0.12261 7.2445E-05 0.47273 0.0002793 591.3374168385739 135.93 0.10239 135.93 135.88 135.99 0 4 2 2 0 0 0 0.94712 1 26931 26931 6.2058 2.0163 1 1092400 + 32420 16907 21647 21662 32052 32052 0.07132042342686873 PAFNHILE 8 Unmodified _PAFNHILE_ 0 0 0 REV__ENST00000504531.2_1_8:76136172-76136379:-|nuORF REV__ENST00000504531.2_1_8:76136172-76136379:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1679992675781 3 314.167749 939.481417 -0.4894 -0.00015375 0.72928 0.00022912 0.23988 7.5364E-05 314.16794135439835 89.387 0.76941 85.609 85.209 85.978 -3.7779 23 21 2 0 0 0 0.80867 1 17068 17068 3.9444 0 1 941430 + 32421 22464 21648 21663 32053 32053 0.009255157259985936 PAFSILLLDY 10 Unmodified _PAFSILLLDY_ 0 0 0 ENSG00000267534|ENST00000646641|S1PR2 ENSG00000267534|ENST00000646641|S1PR2 ENSG00000267534|ENST00000646641|S1PR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3229370117188 2 576.320983 1150.62741 NaN NaN NaN NaN NaN NaN NaN 73.119 1 69.581 69.081 70.081 -3.5385 0 0 0 0.22588 1 13872 13872 11.64 4.0313 1 32422 7988 21649 21664 32054 32054 0.058123534513924824 PAFYAHVKI 9 Unmodified _PAFYAHVKI_ 0 0 0 REV__nc|ENSG00000108306|Q96IG2-2|FBXL20 REV__nc|ENSG00000108306|Q96IG2-2|FBXL20 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7008666992188 2 523.295102 1044.57565 -0.37027 -0.00019376 -0.81156 -0.00042469 -1.1818 -0.00061845 523.2945415731135 52.023 0.37265 49.14 48.9 49.273 -2.8824 17 10 2 0 0 0 0.86532 1 9893 9893 4.756 2.6963 1 1436300 + 32423 15113 21650 21665 32055 32055 0.05514654548119324 PAGAAAVLEE 10 Unmodified _PAGAAAVLEE_ 0 0 0 REV__ENST00000438489.6_1_19:16849058-16926137:+|nuORF REV__ENST00000438489.6_1_19:16849058-16926137:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24951171875 2 464.242732 926.470912 0.56411 0.00026189 -0.59048 -0.00027413 -0.026372 -1.2243E-05 464.24236945401276 120.17 1.0128 115.53 115.17 116.18 -4.645 66 28 3 0 0 0 0.42762 1 23119 23119 10.151 8.4083 1 9599600 + 32424 21685 21651 21666 32056 32056 0.004734882808861585 PAGAADPHW 9 Unmodified _PAGAADPHW_ 0 0 0 REV__ENST00000453427.2_1_8:22457883-22458427:+|nuORF REV__ENST00000453427.2_1_8:22457883-22458427:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5363464355469 2 461.214309 920.414065 NaN NaN NaN NaN NaN NaN NaN 18.061 1 16.547 16.047 17.047 -1.5148 0 0 0 0.23508 1 2655 2655 2.3027 0.4585 1 + 32425 21830 21652 21667 32057 32057 -0.04932514484971762 PAGADEPRAE 10 Unmodified _PAGADEPRAE_ 0 0 0 REV__ENST00000527832.5_1_11:724661-726978:+|nuORF REV__ENST00000527832.5_1_11:724661-726978:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 507.2633972167969 2 506.738345 1011.46214 -0.70002 -0.00035473 0.54627 0.00027682 -0.15375 -7.7913E-05 506.7385579728709 18.59 0.31798 17.265 17.151 17.469 -1.3251 11 8 2 0 0 0 0.8888 1 2816 2816 1.6526 0 1 282790 + 32426 18540 21653 21668 32058 32058 -0.0431348535557845 PAGADFFGF 9 Unmodified _PAGADFFGF_ 0 0 0 ENSG00000154144|ENST00000441174|TBRG1;ENST00000491010.2_1_11:124500632-124500752:+|nuORF;nc|ENSG00000154144|Q3YBR2-3|TBRG1;ENST00000438907.3_1_11:124496635-124502131:+|nuORF;ENST00000530731.5_1_11:124495676-124501136:+|nuORF;nc|ENSG00000154144|Q3YBR2-2|TBRG1 ENSG00000154144|ENST00000441174|TBRG1;ENST00000530731.5_1_11:124495676-124501136:+|nuORF ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 464.16717529296875 2 464.713611 927.412668 0.080302 3.7318E-05 0.96969 0.00045063 1.05 0.00048794 464.7139806055758 148.15 0.70303 143 142.66 143.36 -5.1557 28 19 2 0 0 0 0.85699 1 28742 28742 0 0 1 2831100 32427 4997;10960 21654 21669 32059 32059 -0.05394148573714119 PAGADFFGF 9 Unmodified _PAGADFFGF_ 0 0 0 ENSG00000154144|ENST00000441174|TBRG1;ENST00000491010.2_1_11:124500632-124500752:+|nuORF;nc|ENSG00000154144|Q3YBR2-3|TBRG1;ENST00000438907.3_1_11:124496635-124502131:+|nuORF;ENST00000530731.5_1_11:124495676-124501136:+|nuORF;nc|ENSG00000154144|Q3YBR2-2|TBRG1 ENSG00000154144|ENST00000441174|TBRG1;ENST00000530731.5_1_11:124495676-124501136:+|nuORF ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.713611 927.412668 0.026745 1.2429E-05 0.94795 0.00044053 0.9747 0.00045295 464.7140663135313 147.77 0.57362 143.06 142.73 143.3 -4.7095 0.032001 -1.0206E-05 NaN 0 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2504400 32428 4997;10960 21654 21669 -0.05394148573714119 PAGAGGKR 8 Unmodified _PAGAGGKR_ 0 0 0 ENST00000301764.11_1_11:61100615-61100732:-|nuORF ENST00000301764.11_1_11:61100615-61100732:-|nuORF ENST00000301764.11_1_11:61100615-61100732:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0589904785156 2 357.206287 712.398021 -0.25557 -9.1293E-05 1.6495 0.00058921 1.3939 0.00049791 357.20449381465914 60.92 0.82745 57.987 57.543 58.371 -2.9333 50 23 3 0 0 0 1.0249 1 11692 11692 2.5775 0 1 1650400 32429 8565 21655 21670 32060 32060 0.030318240687961406 PAGAGGKR 8 Unmodified _PAGAGGKR_ 0 0 0 ENST00000301764.11_1_11:61100615-61100732:-|nuORF ENST00000301764.11_1_11:61100615-61100732:-|nuORF ENST00000301764.11_1_11:61100615-61100732:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 357.206287 712.398021 0.099943 3.57E-05 1.0402 0.00037156 1.1401 0.00040726 357.20443736623827 61.168 0.77746 57.799 57.442 58.219 -3.3694 -0.084267 -0.00043631 NaN 2.5775 46 21 3 NaN NaN NaN NaN 0 NaN NaN 0 983080 32430 8565 21655 21670 0.030318240687961406 PAGAGGKR 8 Unmodified _PAGAGGKR_ 0 0 0 ENST00000301764.11_1_11:61100615-61100732:-|nuORF ENST00000301764.11_1_11:61100615-61100732:-|nuORF ENST00000301764.11_1_11:61100615-61100732:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 357.206287 712.398021 -0.51032 -0.00018229 2.1116 0.00075427 1.6013 0.00057198 357.20482657202143 61.103 0.76603 57.863 57.474 58.24 -3.2395 -0.019513 0.00032911 NaN 2.5775 42 21 3 NaN NaN NaN NaN 0 NaN NaN 0 1025700 32431 8565 21655 21670 0.030318240687961406 PAGAGRCWWEA 11 Unmodified _PAGAGRCWWEA_ 0 0 0 ENST00000452622.1_1_7:562147-562501:+|nuORF ENST00000452622.1_1_7:562147-562501:+|nuORF ENST00000452622.1_1_7:562147-562501:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2728271484375 2 602.271832 1202.52911 NaN NaN NaN NaN NaN NaN NaN 177.85 1 177.85 177.35 178.35 0 0 0 0 0.23199 1 36843 36843 6.7232 2.3939 1 32432 9995 21656 21671 32061 32061 -0.06405153345485814 PAGAILKVESP 11 Unmodified _PAGAILKVESP_ 0 0 0 ENST00000380737.7_1_8:26149008-26149152:+|nuORF ENST00000380737.7_1_8:26149008-26149152:+|nuORF ENST00000380737.7_1_8:26149008-26149152:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26806640625 2 541.316232 1080.61791 NaN NaN NaN NaN NaN NaN NaN 162.99 1 157.81 157.31 158.31 -5.1878 0 0 0 0.2268 1 31683 31683 10.824 0 1 32433 9321 21657 21672 32062 32062 0.08082585165857381 PAGAKPRCPF 10 Unmodified _PAGAKPRCPF_ 0 0 0 ENSG00000119950|ENST00000332674|MXI1 ENSG00000119950|ENST00000332674|MXI1 ENSG00000119950|ENST00000332674|MXI1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2750854492188 2 522.276386 1042.53822 NaN NaN NaN NaN NaN NaN NaN 165.34 1 160.36 159.86 160.86 -4.9811 0 0 0 0.22569 1 32306 32306 15.847 4.2069 1 32434 3108 21658 21673 32063 32063 0.018652400108749134 PAGAKWTETEI 11 Unmodified _PAGAKWTETEI_ 0 0 0 ENSG00000258315|ENST00000439424|C17orf49;nc|ENSG00000258315|Q8IXM2-3|BAP18 ENSG00000258315|ENST00000439424|C17orf49 ENSG00000258315|ENST00000439424|C17orf49 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2838745117188 2 601.806228 1201.5979 0.39958 0.00024047 -3.5378 -0.0021291 -3.1382 -0.0018886 601.8048314785922 164.78 0.17708 164.78 164.7 164.88 0 5 4 2 0 0 0 0.72464 1 33362 33362 10.074 1.3285 1 11299000 32435 7950 21659 21674 32064 32064 0.005167894352325675 PAGALHSGRLC 11 Unmodified _PAGALHSGRLC_ 0 0 0 ENSG00000249715|ENST00000624922|FER1L5;FER1L5|p.K1269Efs*5|1|0.36|ENSG00000249715|chr2:96694446-96694447|AA/-|frameshift_variant;FER1L5|p.Q1290Pfs*29|1|0.44|ENSG00000249715|chr2:96695548-96695549|-/C|frameshift_variant ENSG00000249715|ENST00000624922|FER1L5 ENSG00000249715|ENST00000624922|FER1L5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2779541015625 2 541.2822 1080.54985 NaN NaN NaN NaN NaN NaN NaN 170.68 1 165.77 165.27 166.27 -4.9149 0 0 0 0.2268 1 33757 33757 10.824 2.0785 1 32436 7899 21660 21675 32065 32065 0.012794370342362527 PAGAPPLSRP 10 Unmodified _PAGAPPLSRP_ 0 0 0 REV__ENST00000356613.3_2_8:143695553-143695679:-|nuORF REV__ENST00000356613.3_2_8:143695553-143695679:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7732238769531 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 165.35 1 160.4 159.9 160.9 -4.9484 0 0 0 0.22569 1 32302 32302 15.847 1.9411 1 + 32437 20816 21661 21676 32066 32066 0.05220893508658264 PAGARHADEY 10 Unmodified _PAGARHADEY_ 0 0 0 REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7943115234375 2 543.751787 1085.48902 NaN NaN NaN NaN NaN NaN NaN 165.2 1 160.22 159.72 160.72 -4.9811 0 0 0 0.22583 1 32270 32270 13.906 3.0821 1 + 32438 23950 21662 21677 32067 32067 -0.050303767443892866 PAGARRIRVV 10 Unmodified _PAGARRIRVV_ 0 0 0 nc|ENSG00000140470|Q8TE56-2|ADAMTS17;ENST00000378898.8_1_15:100603866-100879329:-|nuORF nc|ENSG00000140470|Q8TE56-2|ADAMTS17 nc|ENSG00000140470|Q8TE56-2|ADAMTS17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7835693359375 2 547.848899 1093.68324 NaN NaN NaN NaN NaN NaN NaN 174.14 1 174.14 173.64 174.64 0 0 0 0 0.22588 1 36037 36037 4.3292 0.38484 1 32439 9287 21663 21678 32068 32068 0.14015044202210447 PAGASYNPYF 10 Unmodified _PAGASYNPYF_ 0 0 0 ENST00000565166.2_1_15:95399162-95399906:+|nuORF ENST00000565166.2_1_15:95399162-95399906:+|nuORF ENST00000565166.2_1_15:95399162-95399906:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7777709960938 2 543.748182 1085.48181 NaN NaN NaN NaN NaN NaN NaN 14.626 1 14.626 14.126 15.126 0 0 0 0 0.22588 1 2189 2189 7.9102 1.187 1 32440 11354 21664 21679 32069 32069 -0.057511093448283646 PAGATSKPRYR 11 Unmodified _PAGATSKPRYR_ 0 0 0 ENST00000219281.7_1_16:58055025-58055211:+|nuORF ENST00000219281.7_1_16:58055025-58055211:+|nuORF ENST00000219281.7_1_16:58055025-58055211:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3008422851562 2 602.333279 1202.652 NaN NaN NaN NaN NaN NaN NaN 163.73 1 163.73 163.23 164.23 0 0 0 0 0.23199 1 33025 33025 6.7232 0.51738 1 32441 8127 21665 21680 32070 32070 0.05878426377466894 PAGDEEFVFA 10 Unmodified _PAGDEEFVFA_ 0 0 0 REV__nc|ENSG00000075340|P35612-3|ADD2 REV__nc|ENSG00000075340|P35612-3|ADD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2744140625 2 541.245472 1080.47639 0.22333 0.00012087 3.4462 0.0018652 3.6695 0.0019861 541.749779252739 156.44 0.10298 151.15 151.1 151.21 -5.2854 4 2 2 0 0 0 0.7323 1 30340 30340 7.9102 0.62092 1 1579400 + 32442 23951 21666 21681 32071 32071 -0.06062832927273121 PAGDLSGHLL 10 Unmodified _PAGDLSGHLL_ 0 0 0 nc|ENSG00000167130|Q86YN1-2|DOLPP1;ENSG00000167130|ENST00000372546|DOLPP1 nc|ENSG00000167130|Q86YN1-2|DOLPP1 nc|ENSG00000167130|Q86YN1-2|DOLPP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26385498046875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 162.49 1 162.49 161.99 162.99 0 0 0 0 0.22588 1 32674 32674 11.64 0.81637 1 32443 5790 21667 21682 32072 32072 0.023328834091330464 PAGEAGIDASR 11 Unmodified _PAGEAGIDASR_ 0 0 0 REV__nc|ENSG00000167395|O15015-1|ZNF646 REV__nc|ENSG00000167395|O15015-1|ZNF646 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.25830078125 2 522.259445 1042.50434 NaN NaN NaN NaN NaN NaN NaN 138.83 1 138.83 138.33 139.33 0 0 0 0 0.23087 1 27579 27579 7.609 0.50723 1 + 32444 17924 21668 21683 32073 32073 -0.015215099472015936 PAGEFYPPY 9 Unmodified _PAGEFYPPY_ 0 0 0 REV__nc|ENSG00000171813|Q6NUJ5-2|PWWP2B REV__nc|ENSG00000171813|Q6NUJ5-2|PWWP2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 521.1476440429688 2 520.739825 1039.4651 0.34954 0.00018202 3.1763 0.001654 3.5259 0.0018361 520.742440348164 144.94 0.2406 140 139.86 140.1 -4.9445 6 4 2 0 0 0 0.87788 1 27998 27998 0.6015 0 1 1454200 + 32445 18252 21669 21684 32074 32074 -0.05305610230766433 PAGEGRWHR 9 Unmodified _PAGEGRWHR_ 0 0 0 REV__ENST00000376112.3_1_20:30193893-30194115:+|nuORF REV__ENST00000376112.3_1_20:30193893-30194115:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.271240234375 2 533.270481 1064.52641 NaN NaN NaN NaN NaN NaN NaN 174.9 1 170.11 169.61 170.61 -4.7898 0 0 0 0.23508 1 35743 35743 7.9102 0.62092 1 + 32446 21074 21670 21685 32075 32075 -0.003272406881023926 PAGEIDDEDKD 11 Unmodified _PAGEIDDEDKD_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2929077148438 2 602.254222 1202.49389 NaN NaN NaN NaN NaN NaN NaN 171.99 1 167.12 166.62 167.62 -4.873 0 0 0 0.23264 1 34107 34107 6.2058 0 1 32447 1583 21671 21686 32076 32076 -0.09925582182950166 PAGEVSLVAS 10 Unmodified _PAGEVSLVAS_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2505187988281 2 465.250557 928.486562 0.20579 9.5744E-05 -0.060177 -2.7997E-05 0.14561 6.7746E-05 465.2504088624888 84.55 0.77205 84.55 84.243 85.015 0 39 21 2 0 0 0 0.65405 1 16480 16480 15.847 3.3156 1 3958000 + 32448 17221 21672 21687 32077 32077 0.01945774797957256 PAGEYEFQCLC 11 Unmodified _PAGEYEFQCLC_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7557373046875 2 630.257199 1258.49985 1.003 0.00063218 -1.3962 -0.00087996 -0.39314 -0.00024778 630.2566315089903 142.39 0.17561 137.73 137.68 137.86 -4.656 5 4 2 0 0 0 0.96084 1 28164 28164 1.3295 0 1 1418300 32449 4444 21673 21688 32078 32078 -0.11906478476612392 PAGFGAEAARP 11 Unmodified _PAGFGAEAARP_ 0 0 0 REV__ENST00000418983.1_1_6:29760019-29760421:-|nuORF REV__ENST00000418983.1_1_6:29760019-29760421:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2655029296875 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 164.99 1 160.2 159.7 160.7 -4.7898 0 0 0 0.21688 1 33008 33008 14.838 5.4551 1 + 32450 21491 21674 21689 32079 32079 3.401640651645721E-05 PAGFVSFLED 10 Unmodified _PAGFVSFLED_ 0 0 0 REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2632446289062 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 120.9 1 116.21 115.71 116.71 -4.6873 0 0 0 0.22583 1 23210 23210 13.906 2.4113 1 + 32451 19463 21675 21690 32080 32080 -0.024259560305381456 PAGFYVTNQTF 11 Unmodified _PAGFYVTNQTF_ 0 0 0 REV__ITGA3|p.G340Vfs*7|1|0.33|ENSG00000005884|chr17:50072041-50072041|G/-|frameshift_variant REV__ITGA3|p.G340Vfs*7|1|0.33|ENSG00000005884|chr17:50072041-50072041|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.757568359375 2 622.800946 1243.58734 NaN NaN NaN NaN NaN NaN NaN 81.01 1 77.453 76.953 77.953 -3.557 0 0 0 0.23199 1 15818 15818 6.7232 0 1 + 32452 13865 21676 21691 32081 32081 -0.024711932192076347 PAGGAAPP 8 Unmodified _PAGGAAPP_ 0 0 0 ENSG00000104967|ENST00000263257|NOVA2 ENSG00000104967|ENST00000263257|NOVA2 ENSG00000104967|ENST00000263257|NOVA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.16943359375 2 319.168839 636.323125 NaN NaN NaN NaN NaN NaN NaN 33.294 1 31.147 30.647 31.647 -2.1468 0 0 0 0.21486 1 5804 5804 2.8892 0 1 32453 2270 21677 21692 32082 32082 -0.009583584624351715 PAGGADPP 8 Unmodified _PAGGADPP_ 0 0 0 REV__ENST00000570306.5_1_17:19284999-19286541:+|nuORF REV__ENST00000570306.5_1_17:19284999-19286541:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.1654357910156 2 341.163754 680.312954 NaN NaN NaN NaN NaN NaN NaN 37.355 1 37.355 36.855 37.855 0 0 0 0 0.23711 1 6906 6906 0.12286 0 1 + 32454 17855 21678 21693 32083 32083 -0.03998966187668884 PAGGGAGVK 9 Unmodified _PAGGGAGVK_ 0 0 0 REV__SPEG|p.R1307Gfs*12|1|0.34|ENSG00000072195|chr2:219472303-219472303|C/-|frameshift_variant REV__SPEG|p.R1307Gfs*12|1|0.34|ENSG00000072195|chr2:219472303-219472303|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5596008300781 2 357.20067 712.386788 0.028402 1.0145E-05 0.48348 0.0001727 0.51189 0.00018285 357.20089628603955 24.599 0.31108 23.065 22.884 23.195 -1.5342 11 8 2 0 0 0 0.77732 1 3993 3993 0.45834 0.45834 1 362750 + 32455 14282 21679 21694 32084 32084 0.01909001974649982 PAGGGGGA 8 Unmodified _PAGGGGGA_ 0 0 0 KHSRP|p.G221Rfs*37|1|0.43|ENSG00000088247|chr19:6418822-6418823|-/G|frameshift_variant;nc|ENSG00000088247|Q92945|KHSRP;KHSRP|p.Q699Sfs*24|1|0.35|ENSG00000088247|chr19:6415173-6415173|G/-|frameshift_variant;KHSRP|p.G663Vfs*60|1|0.14|ENSG00000088247|chr19:6415280-6415280|C/-|frameshift_variant;ENSG00000088247|ENST00000600480|KHSRP REV__ENST00000321297.9_1_11:72528857-72528896:+|nuORF REV__ENST00000321297.9_1_11:72528857-72528896:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.793701171875 1 543.252151 542.244875 0.30176 0.00016393 -0.89365 -0.00048547 -0.59188 -0.00032154 543.2486304595278 145.65 0.14314 140.98 140.89 141.04 -4.6694 5 3 2 0 0 0 1.0244 1 28869 28869 0.79363 0 1 1988200 32456 1725 21680 21695 32085 32085 -0.04455791047666935 PAGGKPTLWPR 11 Unmodified _PAGGKPTLWPR_ 0 0 0 REV__ITGAE|p.A480Lfs*87|1|0.48|ENSG00000083457|chr17:3753872-3753872|C/-|frameshift_variant REV__ITGAE|p.A480Lfs*87|1|0.48|ENSG00000083457|chr17:3753872-3753872|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2498779296875 2 590.33529 1178.65603 NaN NaN NaN NaN NaN NaN NaN 121.46 1 116.91 116.41 117.41 -4.5476 0 0 0 0.23018 1 23943 23943 8.1555 0.8663 1 + 32457 14452 21681 21696 32086 32086 0.07384515871149233 PAGGPAKMRRY 11 Unmodified _PAGGPAKMRRY_ 0 0 0 ENST00000558518.5_1_19:11221397-11222199:+|nuORF ENST00000558518.5_1_19:11221397-11222199:+|nuORF ENST00000558518.5_1_19:11221397-11222199:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2720947265625 2 602.324399 1202.63425 NaN NaN NaN NaN NaN NaN NaN 136.12 1 131.22 130.72 131.72 -4.8951 0 0 0 0.21688 1 26155 26155 14.838 6.6827 1 32458 11265 21682 21697 32087 32087 0.04103387850955187 PAGGPCDG 8 Unmodified _PAGGPCDG_ 0 0 0 ENST00000394266.8_1_16:58549747-58550573:+|nuORF ENST00000394266.8_1_16:58549747-58550573:+|nuORF ENST00000394266.8_1_16:58549747-58550573:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.8082580566406 2 337.134139 672.253725 NaN NaN NaN NaN NaN NaN NaN 54.285 1 51.401 50.901 51.901 -2.8837 0 0 0 0.23366 1 10357 10357 0.25148 0.18749 1 32459 9410 21683 21698 32088 32088 -0.09551185473492296 PAGGPGCD 8 Unmodified _PAGGPGCD_ 0 0 0 ENST00000303212.2_1_19:5824142-5828303:+|nuORF ENST00000303212.2_1_19:5824142-5828303:+|nuORF ENST00000303212.2_1_19:5824142-5828303:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.8084411621094 2 337.134139 672.253725 NaN NaN NaN NaN NaN NaN NaN 51.329 1 51.329 50.829 51.829 0 0 0 0 0.23749 1 9736 9736 0.12286 0 1 32460 8582 21684 21699 32089 32089 -0.09551185473503665 PAGGPGCD 8 Unmodified _PAGGPGCD_ 0 0 0 ENST00000303212.2_1_19:5824142-5828303:+|nuORF ENST00000303212.2_1_19:5824142-5828303:+|nuORF ENST00000303212.2_1_19:5824142-5828303:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.81500244140625 2 337.134139 672.253725 NaN NaN NaN NaN NaN NaN NaN 54.241 1 51.357 50.857 51.857 -2.8837 0 0 0 0.23749 1 10347 10347 0.12286 0 1 32461 8582 21684 21699 32090 32090 -0.09551185473503665 PAGGWRET 8 Unmodified _PAGGWRET_ 0 0 0 ENST00000265678.8_1_6:166825090-166825723:-|nuORF ENST00000265678.8_1_6:166825090-166825723:-|nuORF ENST00000265678.8_1_6:166825090-166825723:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2158203125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 13.306 1 13.306 12.806 13.806 0 0 0 0 0.21486 1 1912 1912 2.5775 0 1 32462 8363 21685 21700 32091 32091 -0.027245144849530334 PAGIAHRLPD 10 Unmodified _PAGIAHRLPD_ 0 0 0 ENST00000322764.9_1_7:143087806-143088163:+|nuORF ENST00000322764.9_1_7:143087806-143088163:+|nuORF ENST00000322764.9_1_7:143087806-143088163:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6884155273438 2 523.790715 1045.56688 -0.44326 -0.00023217 -0.65334 -0.00034221 -1.0966 -0.00057439 523.7903793962683 37.369 0.55481 35.021 34.754 35.308 -2.3479 44 15 4 0 0 0 0.91149 1 6675 6675 0 0 1 7202300 32463 8722 21686 21701 32092 32092 0.04591680911653384 PAGIKRKLCFA 11 Unmodified _PAGIKRKLCFA_ 0 0 0 ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant;ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5 ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.28515625 2 602.355168 1202.69578 0.4255 0.0002563 3.3942 0.0020445 3.8197 0.0023008 602.3565498875904 139.76 0.17531 134.81 134.67 134.85 -4.952 6 4 2 0 0 0 0.94712 1 26890 26890 6.2058 4.3615 1 1548700 32464 12 21687 21702 32093 32093 0.10254319550244873 PAGITDHSHF 10 Unmodified _PAGITDHSHF_ 0 0 0 ENSG00000108557|ENST00000353383|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;nc|ENSG00000258436|Q7Z5J4-4|RAI1;nc|ENSG00000258436|Q7Z5J4-3|RAI1 ENSG00000108557|ENST00000353383|RAI1 ENSG00000108557|ENST00000353383|RAI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2747192382812 2 541.256705 1080.49886 0.3031 0.00016406 -1.2583 -0.00068107 -0.9552 -0.00051701 541.2559666850333 134.09 0.79181 134.09 133.59 134.39 0 39 22 2 0 0 0 0.7323 1 26447 26447 7.9102 0.62092 1 13127000 32465 2482 21688 21703 32094 32094 -0.03817188739003541 PAGITDHSHF 10 Unmodified _PAGITDHSHF_ 0 0 0 ENSG00000108557|ENST00000353383|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;nc|ENSG00000258436|Q7Z5J4-4|RAI1;nc|ENSG00000258436|Q7Z5J4-3|RAI1 ENSG00000108557|ENST00000353383|RAI1 ENSG00000108557|ENST00000353383|RAI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2769165039062 2 541.256705 1080.49886 0.33643 0.0001821 -1.2349 -0.00066837 -0.89842 -0.00048628 541.2560782566262 139.07 1.1608 134.22 133.68 134.84 -4.8492 63 32 3 0 0 0 0.7323 1 26934 26934 7.9102 0.62092 1 10515000 32466 2482 21688 21703 32095 32095 -0.03817188739003541 PAGKARPL 8 Unmodified _PAGKARPL_ 0 0 0 ENST00000524932.5_2_11:10828885-10830017:-|nuORF ENST00000524932.5_2_11:10828885-10830017:-|nuORF ENST00000524932.5_2_11:10828885-10830017:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3118896484375 2 405.253237 808.491922 NaN NaN NaN NaN NaN NaN NaN 43.477 1 40.758 40.258 41.258 -2.7191 0 0 0 0.21486 1 8150 8150 11.114 4.7604 1 32467 10889 21689 21704 32096 32096 0.08001543171087633 PAGKPDVSSHS 11 Unmodified _PAGKPDVSSHS_ 0 0 0 TBX19|p.E115D|1|0.48|ENSG00000143178|chr1:168291301-168291301|G/T|missense_variant TBX19|p.E115D|1|0.48|ENSG00000143178|chr1:168291301-168291301|G/T|missense_variant TBX19|p.E115D|1|0.48|ENSG00000143178|chr1:168291301-168291301|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2796630859375 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 164.12 1 159.33 158.83 159.83 -4.7898 0 0 0 0.22775 1 32772 32772 10.074 0 1 32468 25824 21690 21705 32097 32097 -0.017052234301445424 PAGKSTRRNTR 11 Unmodified _PAGKSTRRNTR_ 0 0 0 ENST00000511316.1_1_4:174254289-174255443:-|nuORF ENST00000511316.1_1_4:174254289-174255443:-|nuORF ENST00000511316.1_1_4:174254289-174255443:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7532958984375 2 622.352534 1242.69051 1.2371 0.00076993 2.6178 0.0016292 3.8549 0.0023991 622.8545536012322 173.43 0.17072 168.64 168.51 168.68 -4.7898 5 4 2 0 0 0 0.86259 1 35348 35348 17.443 12.914 1 6626300 32469 10748 21691 21706 32098 32098 0.07887732011977278 PAGLLRPKK 9 Unmodified _PAGLLRPKK_ 0 0 0 nc|ENSG00000182095|O15417-2|TNRC18;TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.267578125 2 490.324194 978.633835 NaN NaN NaN NaN NaN NaN NaN 139.73 1 139.73 139.23 140.23 0 0 0 0 0.1966 1 27789 27789 0.20686 0 1 32470 12500 21692 21707 32099 32099 0.14366336193415918 PAGLREQE 8 Unmodified _PAGLREQE_ 0 0 0 ENST00000490400.1_1_X:131351707-131353399:-|nuORF ENST00000490400.1_1_X:131351707-131353399:-|nuORF ENST00000490400.1_1_X:131351707-131353399:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.138427734375 2 450.232699 898.450845 0.47066 0.00021191 -1.0405 -0.00046845 -0.56981 -0.00025655 450.2327259517525 30.441 0.27913 28.367 28.22 28.5 -2.0743 10 7 2 0 0 0 1.0035 1 5225 5225 11.114 0 1 302240 32471 10512 21693 21708 32100 32100 -0.0024426265905503897 PAGLVLLAAAW 11 Unmodified _PAGLVLLAAAW_ 0 0 0 REV__ENST00000299954.13_1_17:65373938-65374277:+|nuORF REV__ENST00000299954.13_1_17:65373938-65374277:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2791137695312 2 541.32386 1080.63317 NaN NaN NaN NaN NaN NaN NaN 173.16 1 168.26 167.76 168.76 -4.8977 0 0 0 0.2268 1 34372 34372 10.824 1.4408 1 + 32472 20393 21694 21709 32101 32101 0.09607496753687883 PAGLWTKEL 9 Unmodified _PAGLWTKEL_ 0 0 0 REV__ENST00000502389.1_1_4:39184171-39196284:+|nuORF REV__ENST00000502389.1_1_4:39184171-39196284:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 507.9267272949219 2 507.784567 1013.55458 0.20585 0.00010453 -0.05622 -2.8548E-05 0.14963 7.5982E-05 507.78447745211724 152.26 1.1597 152.26 151.65 152.81 0 72 31 3 0 0 0 0.8319 1 30389 30389 7.9102 0 1 11929000 + 32473 17309 21695 21710 32102 32102 0.04834644448601466 PAGLYFLMWF 10 Unmodified _PAGLYFLMWF_ 0 0 0 ENST00000411991.5_1_2:103340290-103347510:-|nuORF ENST00000411991.5_1_2:103340290-103347510:-|nuORF ENST00000411991.5_1_2:103340290-103347510:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7796630859375 2 622.81227 1243.60999 NaN NaN NaN NaN NaN NaN NaN 165.09 1 160.11 159.61 160.61 -4.9811 0 0 0 0.22588 1 32244 32244 7.9102 1.187 1 32474 9581 21696 21711 32103 32103 -0.0020726535528865497 PAGMDCENVD 10 Unmodified _PAGMDCENVD_ 0 0 0 REV__ENST00000527969.1_1_11:65637109-65637745:-|nuORF REV__ENST00000527969.1_1_11:65637109-65637745:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 525.2072143554688 2 525.696974 1049.3794 0.35317 0.00018566 -1.8255 -0.00095967 -1.4724 -0.00077401 526.1956288744171 144.53 0.10692 139.59 139.51 139.62 -4.9445 4 2 2 0 0 0 0.91149 1 27904 27904 3.5965 1.019 1 1072700 + 32475 18298 21697 21712 32104 32104 -0.1433188647024508 PAGMPQECPQ 10 Unmodified _PAGMPQECPQ_ 0 0 0 ENST00000369902.7_1_10:104391367-104391427:+|nuORF ENST00000369902.7_1_10:104391367-104391427:+|nuORF ENST00000369902.7_1_10:104391367-104391427:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 529.2276000976562 2 529.225702 1056.43685 NaN NaN NaN NaN NaN NaN NaN 172.44 1 167.65 167.15 168.15 -4.7898 0 0 0 0.22588 1 35130 35130 6.7232 0.36906 1 32476 9130 21698 21713 32105 32105 -0.08910999474005621 PAGNADPQKPS 11 Unmodified _PAGNADPQKPS_ 0 0 0 REV__ZNF518B|p.T403Nfs*7|1|0.39|ENSG00000178163|chr4:10445121-10445122|-/T|frameshift_variant REV__ZNF518B|p.T403Nfs*7|1|0.39|ENSG00000178163|chr4:10445121-10445122|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2673950195312 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 170.61 1 165.82 165.32 166.32 -4.7898 0 0 0 0.22862 1 34636 34636 9.3831 1.473 1 + 32477 18589 21699 21714 32106 32106 -0.017052234301445424 PAGNFDNERLA 11 Unmodified _PAGNFDNERLA_ 0 0 0 NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENSG00000110076|ENST00000265459|NRXN2 NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2896118164062 2 602.291276 1202.568 NaN NaN NaN NaN NaN NaN NaN 170.51 1 170.51 170.01 171.01 0 0 0 0 0.22862 1 35063 35063 9.3831 1.7742 1 32478 2561 21700 21715 32107 32107 -0.025181495100923712 PAGPLPALLA 10 Unmodified _PAGPLPALLA_ 0 0 0 ENSG00000187902|ENST00000376325|SHISA7 ENSG00000187902|ENST00000376325|SHISA7 ENSG00000187902|ENST00000376325|SHISA7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2300720214844 2 460.284203 918.553853 0.23334 0.0001074 -0.058965 -2.7141E-05 0.17437 8.0262E-05 460.2840802329412 111.22 2.2335 111.22 110.19 112.42 0 105 63 2 0 0 0 0.63124 1 21858 21858 32.117 0 1 2618300 32479 7135 21701 21716 32108 32108 0.09131849799541669 PAGPPEPSLP 10 Unmodified _PAGPPEPSLP_ 0 0 0 REV__SYNPO2L|p.S608Afs*70|1|0.47|ENSG00000166317|chr10:73647831-73647831|G/-|frameshift_variant REV__SYNPO2L|p.S608Afs*70|1|0.47|ENSG00000166317|chr10:73647831-73647831|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2359313964844 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 160.57 1 160.57 160.07 161.07 0 0 0 0 0.22588 1 32243 32243 12.532 3.1841 1 + 32480 17839 21702 21717 32109 32109 0.00982078660570096 PAGPPTLD 8 Unmodified _PAGPPTLD_ 0 0 0 ENST00000471818.1_1_6:31936126-31936727:+|nuORF;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;SKIV2L|p.E1164Gfs*8|1|0.22|ENSG00000204351|chr6:31969365-31969366|-/G|frameshift_variant;ENSG00000204351|ENST00000375394|SKIC2 ENST00000471818.1_1_6:31936126-31936727:+|nuORF ENST00000471818.1_1_6:31936126-31936727:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 384.201171875 2 384.200336 766.386119 NaN NaN NaN NaN NaN NaN NaN 63.782 1 60.367 59.867 60.867 -3.4158 0 0 0 0.21486 1 11923 11923 5.7604 0 1 32481 7572 21703 21718 32110 32110 -0.006418374650365877 PAGPQETYV 9 Unmodified _PAGPQETYV_ 0 0 0 REV__ENST00000600437.1_1_19:39989581-39996225:+|nuORF REV__ENST00000600437.1_1_19:39989581-39996225:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2339172363281 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 162.98 1 158.19 157.69 158.69 -4.7898 0 0 0 0.23508 1 32455 32455 9.3474 1.4373 1 + 32482 14558 21704 21719 32111 32111 -0.02654798236142142 PAGPQLHGGP 10 Unmodified _PAGPQLHGGP_ 0 0 0 REV__ENST00000166139.8_1_19:677801-677852:+|nuORF REV__ENST00000166139.8_1_19:677801-677852:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2583312988281 2 465.743234 929.471915 0.51364 0.00023923 -0.31768 -0.00014796 0.19596 9.1267E-05 465.74291915656767 31.1 0.52601 28.951 28.67 29.196 -2.1483 38 14 4 0 0 0 0.88157 1 5296 5296 12.532 4.6214 1 3172300 + 32483 19980 21705 21720 32112 32112 0.004357474404741879 PAGPSSTPA 9 Unmodified _PAGPSSTPA_ 0 0 0 REV__NOBOX|p.A321Pfs*27|1|0.33|ENSG00000106410|chr7:144400196-144400196|C/-|frameshift_variant REV__NOBOX|p.A321Pfs*27|1|0.33|ENSG00000106410|chr7:144400196-144400196|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 786.3900146484375 1 784.383559 783.376283 0.48026 0.00037671 0.37328 0.0002928 0.85354 0.0006695 784.3837993528858 22.557 0.66869 22.557 22.258 22.927 0 37 18 3 0 0 0 0.60805 1 3819 3819 12.532 0 1 3659400 + 32484 15051 21706 21721 32113 32113 -0.02407025470415647 PAGQGVHR 8 Unmodified _PAGQGVHR_ 0 0 0 ENST00000596586.5_3_19:46283105-46288963:-|nuORF ENST00000596586.5_3_19:46283105-46288963:-|nuORF ENST00000596586.5_3_19:46283105-46288963:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.1071472167969 2 411.222469 820.430384 NaN NaN NaN NaN NaN NaN NaN 46 1 46 45.5 46.5 0 0 0 0 0.21486 1 8658 8658 8.5933 2.2392 1 32485 11667 21707 21722 32114 32114 0.012986114718046338 PAGQKMETKM 10 Unmodified _PAGQKMETKM_ 0 0 0 REV__ENST00000594207.1_1_19:41774132-41786840:+|nuORF REV__ENST00000594207.1_1_19:41774132-41786840:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 561.1178588867188 2 560.778102 1119.54165 NaN NaN NaN NaN NaN NaN NaN 171.36 1 166.48 165.98 166.98 -4.873 0 0 0 0.22588 1 33956 33956 7.2892 0.56607 1 + 32486 14978 21708 21723 32115 32115 -0.01333877997444688 PAGRAPGLAP 10 Unmodified _PAGRAPGLAP_ 0 0 0 ENST00000265293.8_1_5:167718732-167719017:+|nuORF ENST00000265293.8_1_5:167718732-167719017:+|nuORF ENST00000265293.8_1_5:167718732-167719017:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76080322265625 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 166.23 1 161.44 160.94 161.94 -4.7898 0 0 0 2.8426 1 33372 33372 1.9275 0.47243 1 32487 8354 21709 21724 32116 32116 0.05176624337184421 PAGRCCWDE 9 Unmodified _PAGRCCWDE_ 0 0 0 ENSG00000205669|ENST00000645972|ACOT6;ENSG00000184227|ENST00000311148|ACOT1;ENSG00000119673|ENST00000238651|ACOT2 ENSG00000205669|ENST00000645972|ACOT6 ENSG00000205669|ENST00000645972|ACOT6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 518.4074096679688 2 518.702394 1035.39024 NaN NaN NaN NaN NaN NaN NaN 162.77 1 162.77 162.27 163.27 0 0 0 0 0.23508 1 32750 32750 4.756 0.42677 1 32488 7654 21710 21725 32117 32117 -0.12604439305277992 PAGRDISIRP 10 Unmodified _PAGRDISIRP_ 0 0 0 ENSG00000136928|ENST00000259455|GABBR2 ENSG00000136928|ENST00000259455|GABBR2 ENSG00000136928|ENST00000259455|GABBR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2849731445312 2 541.309272 1080.60399 NaN NaN NaN NaN NaN NaN NaN 135.61 1 130.72 130.22 131.22 -4.8951 0 0 0 0.22588 1 26052 26052 9.3831 0 1 32489 4052 21711 21726 32118 32118 0.06691352457414723 PAGRNLFR 8 Unmodified _PAGRNLFR_ 0 0 0 ENSG00000091844|ENST00000206262|RGS17;ENST00000423358.2_1_13:41567164-41567443:-|nuORF ENSG00000091844|ENST00000206262|RGS17 ENSG00000091844|ENST00000206262|RGS17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.248779296875 2 465.767043 929.519533 -1.4584 -0.00067929 -0.19682 -9.1674E-05 -1.6553 -0.00077097 465.7669349278185 16.435 0.28168 15.082 14.92 15.201 -1.3534 16 7 3 0 0 0 1.0268 1 2309 2309 0.79363 0 1 1284500 32490 1817 21712 21727 32119 32119 0.051954464313212156 PAGRPEVLVEL 11 Unmodified _PAGRPEVLVEL_ 0 0 0 ENSG00000146530|ENST00000275358|VWDE;VWDE|p.N589*|1|0.33|ENSG00000146530|chr7:12370687-12370688|-/A|frameshift_variant;VWDE|p.A290Cfs*4|1|0.41|ENSG00000146530|chr7:12379488-12379489|-/A|frameshift_variant ENSG00000146530|ENST00000275358|VWDE ENSG00000146530|ENST00000275358|VWDE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2708740234375 2 590.340238 1178.66592 NaN NaN NaN NaN NaN NaN NaN 163.06 1 157.92 157.42 158.42 -5.1438 0 0 0 0.21513 1 31711 31711 15.248 3.0078 1 32491 4659 21713 21728 32120 32120 0.08373659085918916 PAGRQLTIFNS 11 Unmodified _PAGRQLTIFNS_ 0 0 0 nc|ENSG00000110076|Q9P2S2-2|NRXN2;nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000110076|Q9P2S2-2|NRXN2;nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000110076|Q9P2S2-2|NRXN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2962646484375 2 602.327662 1202.64077 NaN NaN NaN NaN NaN NaN NaN 170.91 1 170.91 170.41 171.41 0 0 0 0 0.22501 1 35174 35174 12.241 2.6967 1 32492 12280;12491 21714 21729 32121 32121 0.047556042833321044 PAGRQLTIFNS 11 Unmodified _PAGRQLTIFNS_ 0 0 0 nc|ENSG00000110076|Q9P2S2-2|NRXN2;nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000110076|Q9P2S2-2|NRXN2;nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000110076|Q9P2S2-2|NRXN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2755737304688 2 602.327662 1202.64077 NaN NaN NaN NaN NaN NaN NaN 165.36 1 160.57 160.07 161.07 -4.7898 0 0 0 0.22501 1 33109 33109 12.241 2.0901 1 32493 12280;12491 21714 21729 32122 32122 0.047556042833321044 PAGRRASGARS 11 Unmodified _PAGRRASGARS_ 0 0 0 REV__nc|ENSG00000133067|Q9HBX8-1|LGR6 REV__nc|ENSG00000133067|Q9HBX8-1|LGR6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7744140625 2 543.29977 1084.58499 NaN NaN NaN NaN NaN NaN NaN 15.724 1 14.371 13.871 14.871 -1.3534 0 0 0 0.23324 1 2186 2186 5.7319 0 1 + 32494 24043 21715 21730 32123 32123 0.04607815886356548 PAGSAARVYFL 11 Unmodified _PAGSAARVYFL_ 0 0 0 ENST00000257663.3_1_7:77423607-77427674:-|nuORF ENST00000257663.3_1_7:77423607-77427674:-|nuORF ENST00000257663.3_1_7:77423607-77427674:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3133544921875 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 166.58 1 161.63 161.13 162.13 -4.9484 0 0 0 0.22595 1 32662 32662 11.495 1.4208 1 32495 8264 21716 21731 32124 32124 0.04421120742927087 PAGSGGGV 8 Unmodified _PAGSGGGV_ 0 0 0 REV__ENST00000580012.1_1_17:8339672-8339975:+|nuORF REV__ENST00000580012.1_1_17:8339672-8339975:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2847290039062 1 601.294016 600.28674 0.54548 0.00032799 0.27577 0.00016582 0.82125 0.00049381 601.2968385617755 171.65 0.31485 166.74 166.55 166.87 -4.9149 10 8 2 0 0 0 8448 1 34005 34005 3.5871 2.9602 1 3534400 + 32496 23232 21717 21732 32125 32125 -0.029392353591447318 PAGSNEWTGQ 10 Unmodified _PAGSNEWTGQ_ 0 0 0 REV__ATXN2L|p.T504Hfs*33|1|0.12|ENSG00000168488|chr16:28832387-28832388|-/C|frameshift_variant REV__ATXN2L|p.T504Hfs*33|1|0.12|ENSG00000168488|chr16:28832387-28832388|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6871948242188 2 523.73052 1045.44649 -0.25103 -0.00013147 -0.39489 -0.00020681 -0.64592 -0.00033829 523.730510921959 87.833 1.1152 84.04 83.402 84.518 -3.7926 72 30 4 0 0 0 0.75442 2 17071 17071;17088 4.3292 0 1 8905900 + 32497 13160 21718 21733 32126;32127 32126 -0.07441771872618119 PAGSSGVG 8 Unmodified _PAGSSGVG_ 0 0 0 REV__ENST00000395784.1_1_5:96271114-96272330:+|nuORF REV__ENST00000395784.1_1_5:96271114-96272330:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7664794921875 1 631.304581 630.297304 0.99696 0.00062938 1.6762 0.0010582 2.6731 0.0016876 631.3034892399377 141.98 0.14452 137.33 137.2 137.35 -4.6493 5 3 2 0 0 0 1.0244 1 28060 28060 2.8892 0 1 2063700 + 32498 21265 21719 21734 32128 32128 -0.03263252704709885 PAGSSRAELR 10 Unmodified _PAGSSRAELR_ 0 0 0 ENST00000317361.11_1_22:18256558-18256714:-|nuORF ENST00000317361.11_1_22:18256558-18256714:-|nuORF ENST00000317361.11_1_22:18256558-18256714:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2811279296875 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 170.98 1 166.19 165.69 166.69 -4.7898 0 0 0 0.22588 1 34734 34734 10.074 2.1638 1 32499 8687 21720 21735 32129 32129 0.032381890436681715 PAGTAGAG 8 Unmodified _PAGTAGAG_ 0 0 0 REV__ENST00000534837.5_1_12:6803716-6804310:-|nuORF REV__ENST00000534837.5_1_12:6803716-6804310:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2979125976562 1 601.294016 600.28674 0.54548 0.00032799 0.27577 0.00016582 0.82125 0.00049381 601.2968385617755 171.65 0.31485 166.74 166.55 166.87 -4.9149 10 8 2 0 0 0 0.7545 1 33989 33989 6.3541 0 1 3534400 + 32500 22806 21721 21736 32130 32130 -0.02939235359133363 PAGVLKHLQV 10 Unmodified _PAGVLKHLQV_ 0 0 0 nc|ENSG00000160882|P15538-2|CYP11B1 nc|ENSG00000160882|P15538-2|CYP11B1 nc|ENSG00000160882|P15538-2|CYP11B1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 531.3246459960938 2 531.326934 1060.63931 NaN NaN NaN NaN NaN NaN NaN 173.11 1 168.32 167.82 168.82 -4.7898 0 0 0 0.22588 1 35294 35294 7.9102 0.62092 1 32501 12408 21722 21737 32131 32131 0.1114201498521652 PAGVQAPPGL 10 Unmodified _PAGVQAPPGL_ 0 0 0 REV__ENSG00000183307|ENST00000331437|TMEM121B REV__ENSG00000183307|ENST00000331437|TMEM121B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.754638671875 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 164.93 1 160.14 159.64 160.64 -4.7898 0 0 0 0.22561 1 32991 32991 16.942 4.4107 1 + 32502 18827 21723 21738 32132 32132 0.04053802243049631 PAGVQLIFS 9 Unmodified _PAGVQLIFS_ 0 0 0 ENST00000376014.7_1_1:15537009-15541518:+|nuORF ENST00000376014.7_1_1:15537009-15541518:+|nuORF ENST00000376014.7_1_1:15537009-15541518:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 466.26507568359375 2 466.26601 930.517468 NaN NaN NaN NaN NaN NaN NaN 173.79 1 168.91 168.41 169.41 -4.8845 0 0 0 0.23508 1 34509 34509 9.3474 1.4373 1 32503 9244 21724 21739 32133 32133 0.04942972902870224 PAGWRGDTC 9 Unmodified _PAGWRGDTC_ 0 0 0 EGFL7|p.R184Gfs*13|1|0.39|ENSG00000172889|chr9:136670300-136670300|G/-|frameshift_variant;ENSG00000172889|ENST00000308874|EGFL7 EGFL7|p.R184Gfs*13|1|0.39|ENSG00000172889|chr9:136670300-136670300|G/-|frameshift_variant EGFL7|p.R184Gfs*13|1|0.39|ENSG00000172889|chr9:136670300-136670300|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77685546875 2 481.711076 961.4076 NaN NaN NaN NaN NaN NaN NaN 105.62 1 101.36 100.86 101.86 -4.2638 0 0 0 0.23411 1 20787 20787 13.508 2.3934 1 32504 923 21725 21740 32134 32134 -0.07464775707978788 PAGWWPAGRP 10 Unmodified _PAGWWPAGRP_ 0 0 0 ENST00000554479.5_1_14:100204119-100317222:+|nuORF ENST00000554479.5_1_14:100204119-100317222:+|nuORF ENST00000554479.5_1_14:100204119-100317222:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7799072265625 2 547.780151 1093.54575 NaN NaN NaN NaN NaN NaN NaN 13.477 1 12.267 11.767 12.767 -1.2106 0 0 0 0.22588 1 1706 1706 1.8442 0 1 32505 11219 21726 21741 32135 32135 0.002717156027983947 PAHGAALL 8 Unmodified _PAHGAALL_ 0 0 0 REV__ENST00000290881.11_1_16:67217371-67217884:-|nuORF REV__ENST00000290881.11_1_16:67217371-67217884:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21795654296875 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 52.59 1 52.59 52.09 53.09 0 0 0 0 0.23711 1 9999 9999 0.0082765 0 1 + 32506 20353 21727 21742 32136 32136 0.03889878871370911 PAHLASVSTP 10 Unmodified _PAHLASVSTP_ 0 0 0 ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant;ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant;ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292 ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2644958496094 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 165.06 1 160.08 159.58 160.58 -4.9811 0 0 0 2.8426 1 32235 32235 0.20733 0.14346 1 32507 7211 21728 21743 32137 32137 0.023328834091330464 PAHLLSSSAP 10 Unmodified _PAHLLSSSAP_ 0 0 0 XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2 XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2530822753906 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 0.55366 1 11057 11057 21.747 1.293 1 39769000 32508 5399 21729 21744 32138 32138 0.02332883409144415 PAHLSLLRLSH 11 Unmodified _PAHLSLLRLSH_ 0 0 0 SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7667846679688 2 622.367121 1242.71969 0.43014 0.00026771 0.1591 9.9017E-05 0.58924 0.00036672 622.8704381304887 164.62 0.24075 159.58 159.49 159.73 -5.0446 8 6 2 0 0 0 0.94227 1 32107 32107 4.5289 1.5336 1 7452500 32509 25674 21730 21745 32139 32139 0.10803876308273175 PAHNTCPD 8 Unmodified _PAHNTCPD_ 0 0 0 nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1 nc|ENSG00000183117|Q96PZ7-2|CSMD1 nc|ENSG00000183117|Q96PZ7-2|CSMD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.13775634765625 2 427.676702 853.338851 -0.089372 -3.8222E-05 1.044 0.00044648 0.9546 0.00040826 427.6771451685562 41.735 0.7452 39.084 38.755 39.5 -2.651 28 20 2 0 0 0 1.0095 1 7481 7481 10.183 1.5901 1 717800 32510 6830 21731 21746 32140 32140 -0.09368440007699519 PAHNTCPD 8 Unmodified _PAHNTCPD_ 0 0 0 nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1 nc|ENSG00000183117|Q96PZ7-2|CSMD1 nc|ENSG00000183117|Q96PZ7-2|CSMD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 427.676702 853.338851 -0.31315 -0.00013393 1.5018 0.0006423 1.1887 0.00050837 427.677345245711 41.741 0.96406 39.106 38.78 39.744 -2.6348 0.011045 0.00019078 NaN 10.183 34 27 2 NaN NaN NaN NaN 0 NaN NaN 0 834050 32511 6830 21731 21746 -0.09368440007699519 PAILALKLK 9 Unmodified _PAILALKLK_ 0 0 0 tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1 tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1 tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 483.8375549316406 2 483.839146 965.663738 NaN NaN NaN NaN NaN NaN NaN 163.92 1 159.13 158.63 159.63 -4.7898 0 0 0 0.19634 1 32716 32716 0.0033805 0 1 32512 26261 21732 21747 32141 32141 0.1795327513873417 PAILSKLLLL 10 Unmodified _PAILSKLLLL_ 0 0 0 UNC79|p.T1143A|1|0.43|ENSG00000133958|chr14:93600623-93600623|A/G|missense_variant UNC79|p.T1143A|1|0.43|ENSG00000133958|chr14:93600623-93600623|A/G|missense_variant UNC79|p.T1143A|1|0.43|ENSG00000133958|chr14:93600623-93600623|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27490234375 2 540.873185 1079.73182 0.34917 0.00018886 2.9646 0.0016035 3.3137 0.0017923 540.8741374377273 140.63 0.17236 135.76 135.63 135.81 -4.8678 8 4 3 0 0 0 0.91149 1 27098 27098 1.8442 0 1 2199500 32513 26554 21733 21748 32142 32142 0.19514099998764323 PAIPSRIWY 9 Unmodified _PAIPSRIWY_ 0 0 0 ENSG00000139330|ENST00000266719|KERA ENSG00000139330|ENST00000266719|KERA ENSG00000139330|ENST00000266719|KERA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 368.2063293457031 3 368.206315 1101.59712 -0.36746 -0.0001353 -0.24976 -9.1963E-05 -0.61722 -0.00022727 368.20622600826465 57.254 1.2272 54.359 53.922 55.149 -2.8944 61 34 4 0 0 0 0.77219 1 11124 11124 2.9952 1.151 1 4834800 32514 4241 21734 21749 32143 32143 0.05038039576857045 PAIPSRIWY 9 Unmodified _PAIPSRIWY_ 0 0 0 ENSG00000139330|ENST00000266719|KERA ENSG00000139330|ENST00000266719|KERA ENSG00000139330|ENST00000266719|KERA MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 368.206315 1101.59712 -0.26899 -9.9044E-05 -0.38587 -0.00014208 -0.65487 -0.00024113 368.20615984200856 54.598 0.91227 54.598 54.137 55.049 0 0.16273 -8.0867E-05 NaN 2.9952 51 25 3 NaN NaN NaN NaN 0 NaN NaN 0 3637200 32515 4241 21734 21749 0.05038039576857045 PAIPSRIWY 9 Unmodified _PAIPSRIWY_ 0 0 0 ENSG00000139330|ENST00000266719|KERA ENSG00000139330|ENST00000266719|KERA ENSG00000139330|ENST00000266719|KERA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 368.206315 1101.59712 0.077566 2.856E-05 -0.64369 -0.00023701 -0.56613 -0.00020845 368.2060749981221 57.596 0.67617 54.344 54.009 54.685 -3.2517 -0.091789 -0.00036566 NaN 2.9952 48 18 4 NaN NaN NaN NaN 0 NaN NaN 0 3131700 32516 4241 21734 21749 0.05038039576857045 PAIPSRIWY 9 Unmodified _PAIPSRIWY_ 0 0 0 ENSG00000139330|ENST00000266719|KERA ENSG00000139330|ENST00000266719|KERA ENSG00000139330|ENST00000266719|KERA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 368.206315 1101.59712 -0.62426 -0.00022986 -0.10019 -3.6891E-05 -0.72445 -0.00026675 368.20629720919504 57.646 1.093 54.441 53.792 54.885 -3.2052 0.0052894 0.0002347 NaN 2.9952 60 30 4 NaN NaN NaN NaN 0 NaN NaN 0 3556700 32517 4241 21734 21749 0.05038039576857045 PAIQWGLKPQ 10 Unmodified _PAIQWGLKPQ_ 0 0 0 ENSG00000262152|ENST00000573315|GREP1 ENSG00000262152|ENST00000573315|GREP1 ENSG00000262152|ENST00000573315|GREP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 569.2972412109375 2 569.324391 1136.63423 NaN NaN NaN NaN NaN NaN NaN 170.57 1 165.78 165.28 166.28 -4.7898 0 0 0 0.22588 1 34624 34624 10.074 2.1638 1 32518 7965 21735 21750 32144 32144 0.07137711122595647 PAIRERHWQQL 11 Unmodified _PAIRERHWQQL_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;DNAH17|p.G2596Afs*13|1|0.33|ENSG00000187775|chr17:78479600-78479600|G/-|frameshift_variant;DNAH17|p.R1580Gfs*23|1|0.38|ENSG00000187775|chr17:78506785-78506785|G/-|frameshift_variant;DNAH17|p.K2058Qfs*32|1|0.09|ENSG00000187775|chr17:78494691-78494692|-/G|frameshift_variant;DNAH17|p.D2341Tfs*111|1|0.32|ENSG00000187775|chr17:78486305-78486305|G/-|frameshift_variant ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74249267578125 3 478.596865 1432.76877 -0.11115 -5.3198E-05 0.13052 6.2466E-05 0.019364 9.2675E-06 478.59707215315905 19.24 0.20757 19.24 19.172 19.38 0 8 5 2 0 0 0 0.96173 1 3153 3153 2.2527 0 1 588570 32519 7127 21736 21751 32145 32145 0.06969164597217059 PAISRLQAAPA 11 Unmodified _PAISRLQAAPA_ 0 0 0 ENSG00000176678|ENST00000320241|FOXL1 ENSG00000176678|ENST00000320241|FOXL1 ENSG00000176678|ENST00000320241|FOXL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7930297851562 2 547.819473 1093.62439 NaN NaN NaN NaN NaN NaN NaN 171.54 1 166.62 166.12 167.12 -4.9149 0 0 0 0.224 1 33980 33980 13.042 0 1 32520 6480 21737 21752 32146 32146 0.0813252311722863 PAITLRNKRFG 11 Unmodified _PAITLRNKRFG_ 0 0 0 ENST00000317025.12_1_8:38187341-38189007:-|nuORF ENST00000317025.12_1_8:38187341-38189007:-|nuORF ENST00000317025.12_1_8:38187341-38189007:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2374267578125 3 424.922689 1271.74624 0.11531 4.8996E-05 -0.30925 -0.00013141 -0.19395 -8.2413E-05 424.922535341137 33.773 0.31622 31.557 31.389 31.705 -2.2158 12 8 2 0 0 0 0.96214 1 5869 5869 0 0 1 378640 32521 8684 21738 21753 32147 32147 0.12123565199590303 PAKDQHGP 8 Unmodified _PAKDQHGP_ 0 0 0 REV__ENST00000586108.1_1_17:73839291-73840610:-|nuORF REV__ENST00000586108.1_1_17:73839291-73840610:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23724365234375 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 17.823 1 16.309 15.809 16.809 -1.5148 0 0 0 0.21486 1 2611 2611 2.8892 0 1 + 32522 23263 21739 21754 32148 32148 -0.01620514484955038 PAKGKKKKK 9 Unmodified _PAKGKKKKK_ 0 0 0 ENST00000560801.5_2_15:31320559-31354823:-|nuORF;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;TRPM1|p.Q811Tfs*12|1|0.28|ENSG00000134160|chr15:31037785-31037786|-/T|frameshift_variant;TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant ENST00000560801.5_2_15:31320559-31354823:-|nuORF ENST00000560801.5_2_15:31320559-31354823:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.23797607421875 3 338.237838 1011.69168 NaN NaN NaN NaN NaN NaN NaN 6.8777 1 6.1986 5.6986 6.6986 -0.67913 0 0 0 0.23508 1 565 565 0.26902 0.26902 1 32523 3830 21740 21755 32149 32149 0.18630598118829766 PAKINCSWF 9 Unmodified _PAKINCSWF_ 0 0 0 nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12;ENST00000519675.1_1_8:105521165-105601125:-|nuORF;LRP12|p.C451Afs*37|2|0.28|ENSG00000147650|chr8:104497201-104497201|A/-|frameshift_variant nc|ENSG00000147650|Q9Y561-2|LRP12 nc|ENSG00000147650|Q9Y561-2|LRP12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2626342773438 2 533.262945 1064.51134 NaN NaN NaN NaN NaN NaN NaN 164.61 1 164.61 164.11 165.11 0 0 0 0 0.23508 1 33308 33308 12.532 1.7076 1 32524 4714 21741 21756 32150 32150 -0.018338686003289695 PAKKKMKLR 9 Unmodified _PAKKKMKLR_ 0 0 0 ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant;SIN3B|p.F776Lfs*21|1|0.31|ENSG00000127511|chr19:16869880-16869880|T/-|frameshift_variant ENSG00000127511|ENST00000248054|SIN3B ENSG00000127511|ENST00000248054|SIN3B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 550.8124389648438 2 550.360253 1098.70595 NaN NaN NaN NaN NaN NaN NaN 173.4 1 168.52 168.02 169.02 -4.881 0 0 0 0.23508 1 34473 34473 4.756 0.81161 1 32525 3478 21742 21757 32151 32151 0.1605492727546789 PAKKKSCFQI 10 Unmodified _PAKKKSCFQI_ 0 0 0 ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.318603515625 2 575.326076 1148.6376 0.18797 0.00010814 -3.3377 -0.0019203 -3.1498 -0.0018121 575.3236380818652 163.52 0.54771 158.73 158.34 158.88 -4.7898 27 15 3 0 0 0 0.5575 1 32562 32562 21.537 1.1224 1 13643000 32526 7265 21743 21758 32152 32152 0.06922637904949624 PAKLENPTPR 10 Unmodified _PAKLENPTPR_ 0 0 0 ENST00000334554.11_1_22:20133474-20133888:+|nuORF ENST00000334554.11_1_22:20133474-20133888:+|nuORF ENST00000334554.11_1_22:20133474-20133888:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2141418457031 3 374.880379 1121.61931 -1.9078 -0.0007152 1.2333 0.00046233 -0.67451 -0.00025286 374.8808875373034 18.027 0.41807 16.513 16.363 16.781 -1.5148 22 11 3 0 0 0 0.75844 1 2692 2692 3.0723 0.98626 1 1266600 32527 8795 21744 21759 32153 32153 0.06336219254603748 PAKLKIRKQ 9 Unmodified _PAKLKIRKQ_ 0 0 0 ENSG00000109944|ENST00000227349|JHY ENSG00000109944|ENST00000227349|JHY ENSG00000109944|ENST00000227349|JHY MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2785034179688 2 541.36385 1080.71315 NaN NaN NaN NaN NaN NaN NaN 173.72 1 173.72 173.22 174.22 0 0 0 0 0.23508 1 35936 35936 4.3292 2.2695 1 32528 2550 21745 21760 32154 32154 0.17601983147551437 PAKLRSLLAP 10 Unmodified _PAKLRSLLAP_ 0 0 0 REV__CTNND2|p.D443Tfs*113|1|0.35|ENSG00000169862|chr5:11364741-11364741|C/-|frameshift_variant REV__CTNND2|p.D443Tfs*113|1|0.35|ENSG00000169862|chr5:11364741-11364741|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2789306640625 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 164.14 1 164.14 163.64 164.64 0 0 0 0 0.22588 1 33157 33157 7.2892 1.0834 1 + 32529 13606 21746 21761 32155 32155 0.14086588019290502 PAKPERRPSLP 11 Unmodified _PAKPERRPSLP_ 0 0 0 nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14 nc|ENSG00000100722|Q6PJT7-10|ZC3H14 nc|ENSG00000100722|Q6PJT7-10|ZC3H14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 624.3998413085938 2 624.364579 1246.7146 NaN NaN NaN NaN NaN NaN NaN 164.08 1 164.08 163.58 164.58 0 0 0 0 0.23018 1 33139 33139 8.1555 2.8586 1 32530 2008 21747 21762 32156 32156 0.10111572445657657 PAKPRRHT 8 Unmodified _PAKPRRHT_ 0 0 0 NYAP1|p.P122T|1|0.3|ENSG00000166924|chr7:100487116-100487116|C/A|missense_variant NYAP1|p.P122T|1|0.3|ENSG00000166924|chr7:100487116-100487116|C/A|missense_variant NYAP1|p.P122T|1|0.3|ENSG00000166924|chr7:100487116-100487116|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78411865234375 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 164.9 1 159.83 159.33 160.33 -5.0648 0 0 0 0.21486 1 32189 32189 9.3474 0 1 32531 12721 21748 21763 32157 32157 0.07466537696939213 PAKRFGCK 8 Unmodified _PAKRFGCK_ 0 0 0 REV__ENST00000482027.1_1_3:119747713-119748052:+|nuORF REV__ENST00000482027.1_1_3:119747713-119748052:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7536315917969 2 453.752547 905.490542 NaN NaN NaN NaN NaN NaN NaN 162.79 1 157.6 157.1 158.1 -5.1878 0 0 0 0.21486 1 31629 31629 10.183 1.5901 1 + 32532 18460 21749 21764 32158 32158 0.034015858106840824 PAKRPRRQ 8 Unmodified _PAKRPRRQ_ 0 0 0 nc|ENSG00000111726|Q8NFW8-2|CMAS;ENSG00000111726|ENST00000229329|CMAS nc|ENSG00000111726|Q8NFW8-2|CMAS nc|ENSG00000111726|Q8NFW8-2|CMAS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.13446044921875 2 504.812316 1007.61008 -0.51506 -0.00026001 1.9289 0.00097372 1.4138 0.00071371 504.8131802042165 16.032 0.1091 14.816 14.762 14.871 -1.2159 4 2 2 0 0 0 1.0271 1 2509 2509 0.69038 0.088878 1 202960 32533 2641 21750 21765 32159 32159 0.10657915479600888 PAKRPRRQ 8 Unmodified _PAKRPRRQ_ 0 0 0 nc|ENSG00000111726|Q8NFW8-2|CMAS;ENSG00000111726|ENST00000229329|CMAS nc|ENSG00000111726|Q8NFW8-2|CMAS nc|ENSG00000111726|Q8NFW8-2|CMAS MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 504.812316 1007.61008 0.091993 4.6439E-05 1.5702 0.00079266 1.6622 0.0008391 504.81305910192026 14.911 0.17704 14.911 14.807 14.984 0 0.047317 -0.00022234 NaN 0.69038 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 686440 32534 2641 21750 21765 0.10657915479600888 PAKRTSVFIQP 11 Unmodified _PAKRTSVFIQP_ 0 0 0 nc|ENSG00000135457|Q12800-2|TFCP2;nc|ENSG00000135457|Q12800-3|TFCP2 nc|ENSG00000135457|Q12800-2|TFCP2 nc|ENSG00000135457|Q12800-2|TFCP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7582397460938 2 622.361505 1242.70846 1.2316 0.00076651 -2.1963 -0.0013669 -0.96467 -0.00060037 622.8598801701709 172.48 0.13972 167.69 167.61 167.75 -4.7898 6 3 2 0 0 0 0.74417 1 35128 35128 8.7454 0 1 4723000 32535 12340 21751 21766 32160 32160 0.09681054214138385 PAKTKKLK 8 Unmodified _PAKTKKLK_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.21075439453125 3 305.211289 912.612037 NaN NaN NaN NaN NaN NaN NaN 71.94 1 68.402 67.902 68.902 -3.5385 0 0 0 0.21486 1 13643 13643 0.45834 0 1 32536 4765 21752 21767 32161 32161 0.15223531444826222 PAKTYHFIY 9 Unmodified _PAKTYHFIY_ 0 0 0 ALKBH4|p.R45H|1|0.19|ENSG00000160993|chr7:102459791-102459791|C/T|missense_variant ALKBH4|p.R45H|1|0.19|ENSG00000160993|chr7:102459791-102459791|C/T|missense_variant ALKBH4|p.R45H|1|0.19|ENSG00000160993|chr7:102459791-102459791|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 569.9979858398438 2 570.297842 1138.58113 -0.13239 -7.5503E-05 -2.4507 -0.0013976 -2.583 -0.0014731 570.2978635196142 132.42 0.25345 127.79 127.62 127.88 -4.6399 9 6 2 0 0 0 0.84208 1 26117 26117 0.40072 0 1 744980 32537 123 21753 21768 32162 32162 0.017383333399493495 PAKYKYMF 8 Unmodified _PAKYKYMF_ 0 0 0 REV__ENSG00000068615|ENST00000538924|REEP1 REV__ENSG00000068615|ENST00000538924|REEP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6785888671875 2 524.270238 1046.52592 0.1756 9.2063E-05 -2.0022 -0.0010497 -1.8266 -0.00095762 524.7711903878208 132.55 0.17358 132.55 132.44 132.61 0 6 4 2 0 0 0 1.0095 1 26197 26197 10.183 0 1 3430900 + 32538 14229 21754 21769 32163 32163 0.004522035478203179 PALCHVMLY 9 Unmodified _PALCHVMLY_ 0 0 0 ENST00000521471.5_1_5:169758543-169759937:+|nuORF;ENST00000436248.3_1_5:169758553-169759937:+|nuORF ENST00000521471.5_1_5:169758543-169759937:+|nuORF ENST00000521471.5_1_5:169758543-169759937:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6776123046875 2 523.761723 1045.50889 -0.24946 -0.00013066 0.42054 0.00022026 0.17108 8.9606E-05 523.761499985052 87.064 0.4549 83.113 82.892 83.347 -3.9503 17 12 2 0 0 0 0.57821 1 16611 16611 14.582 0.67564 1 1303300 32539 9837 21755 21770 32164 32164 -0.012040403296396107 PALGVHVAAQ 10 Unmodified _PALGVHVAAQ_ 0 0 0 ENST00000546151.5_1_11:61120480-61124010:-|nuORF;ENST00000540139.5_3_11:61120480-61121493:-|nuORF ENST00000546151.5_1_11:61120480-61124010:-|nuORF ENST00000546151.5_1_11:61120480-61124010:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7742614746094 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 162.68 1 162.68 162.18 163.18 0 0 0 0 0.22588 1 32726 32726 12.532 0 1 32540 11066 21756 21771 32165 32165 0.052208935086468955 PALKKLLF 8 Unmodified _PALKKLLF_ 0 0 0 REV__ENSG00000136830|ENST00000373312|NIBAN2 REV__ENSG00000136830|ENST00000373312|NIBAN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24090576171875 2 465.312764 928.610974 -0.033979 -1.5811E-05 0.57641 0.00026821 0.54243 0.0002524 465.3128995251828 56.138 0.55743 56.138 55.836 56.394 0 25 15 3 0 0 0 0.89848 1 10735 10735 1.3295 1.0225 1 1659000 + 32541 16352 21757 21772 32166 32166 0.1438131707594721 PALKKLLF 8 Unmodified _PALKKLLF_ 0 0 0 REV__ENSG00000136830|ENST00000373312|NIBAN2 REV__ENSG00000136830|ENST00000373312|NIBAN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24810791015625 2 465.312764 928.610974 -0.10385 -4.8323E-05 0.031647 1.4726E-05 -0.072203 -3.3597E-05 465.3127505679882 59.489 0.55846 56.555 56.191 56.749 -2.9333 28 15 2 0 0 0 0.89479 1 11404 11404 1.3295 1.0225 1 1516200 + 32542 16352 21757 21772 32167 32167 0.1438131707594721 PALKKLLF 8 Unmodified _PALKKLLF_ 0 0 0 REV__ENSG00000136830|ENST00000373312|NIBAN2 REV__ENSG00000136830|ENST00000373312|NIBAN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2401123046875 2 465.312764 928.610974 0.046211 2.1502E-05 0.062287 2.8983E-05 0.1085 5.0485E-05 465.3127679024434 59.737 0.48419 56.423 56.173 56.657 -3.3139 21 13 2 0 0 0 1.0262 1 11124 11124 6.3541 3.4649 1 1522200 + 32543 16352 21757 21772 32168 32168 0.1438131707594721 PALKRKKKK 9 Unmodified _PALKRKKKK_ 0 0 0 KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1 KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 548.8275146484375 2 548.887493 1095.76043 NaN NaN NaN NaN NaN NaN NaN 164.27 1 159.48 158.98 159.98 -4.7898 0 0 0 0.23508 1 32815 32815 4.756 2.4533 1 32544 2199 21758 21773 32169 32169 0.21638262418559862 PALLACSSH 9 Unmodified _PALLACSSH_ 0 0 0 ENST00000460425.1_1_10:49863935-49864277:-|nuORF ENST00000460425.1_1_10:49863935-49864277:-|nuORF ENST00000460425.1_1_10:49863935-49864277:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 300.1522521972656 3 300.153222 897.437837 NaN NaN NaN NaN NaN NaN NaN 94.635 1 94.635 94.135 95.135 0 0 0 0 0.23508 1 18533 18533 1.1933 0 1 32545 10055 21759 21774 32170 32170 -0.014984170427851495 PALLLCTW 8 Unmodified _PALLLCTW_ 0 0 0 REV__EPHA5|p.C47Afs*15|1|0.22|ENSG00000145242|chr4:65669605-65669605|C/-|frameshift_variant REV__EPHA5|p.C47Afs*15|1|0.22|ENSG00000145242|chr4:65669605-65669605|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.1546630859375 3 306.170213 915.48881 NaN NaN NaN NaN NaN NaN NaN 81.861 1 81.861 81.361 82.361 0 0 0 0 0.21486 1 15950 15950 1.6526 0 1 + 32546 23494 21760 21775 32171 32171 0.027685320020509607 PALLLCTW 8 Unmodified _PALLLCTW_ 0 0 0 REV__EPHA5|p.C47Afs*15|1|0.22|ENSG00000145242|chr4:65669605-65669605|C/-|frameshift_variant REV__EPHA5|p.C47Afs*15|1|0.22|ENSG00000145242|chr4:65669605-65669605|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.1700439453125 3 306.170213 915.48881 NaN NaN NaN NaN NaN NaN NaN 82.091 1 82.091 81.591 82.591 0 0 0 0 0.21486 1 15993 15993 1.6526 0 1 + 32547 23494 21760 21775 32172 32172 0.027685320020509607 PALLLLLLL 9 Unmodified _PALLLLLLL_ 0 0 0 ENSG00000064687|ENST00000263094|ABCA7;nc|ENSG00000064687|Q8IZY2-2|ABCA7;SEMA6B|p.R276Afs*11|3|0.39|ENSG00000167680|chr19:4552585-4552585|G/-|frameshift_variant;ENSG00000149654|ENST00000537909|CDH22;CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant;nc|ENSG00000125861|Q9GZZ7|GFRA4;nc|ENSG00000134470|Q13261-9|IL15RA;IL15RA|p.L122Sfs*48|1|0.04|ENSG00000134470|chr10:5963761-5963762|-/A|frameshift_variant;ENSG00000134470|ENST00000379977|IL15RA;nc|ENSG00000134470|Q13261-4|IL15RA;nc|ENSG00000134470|Q13261-3|IL15RA;nc|ENSG00000134470|Q13261-5|IL15RA;nc|ENSG00000134470|Q13261-6|IL15RA;nc|ENSG00000134470|Q13261-7|IL15RA;nc|ENSG00000125861|Q9GZZ7-3|GFRA4;nc|ENSG00000134470|Q13261-8|IL15RA;ENSG00000125861|ENST00000290417|GFRA4;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000167680|ENST00000586582|SEMA6B ENSG00000064687|ENST00000263094|ABCA7;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;nc|ENSG00000167680|Q9H3T3-3|SEMA6B ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27508544921875 2 489.851722 977.68889 NaN NaN NaN NaN NaN NaN NaN 164.08 1 164.08 163.58 164.58 0 0 0 0 0.23508 1 33137 33137 2.3027 0 1 32548 64;1341;5833 21761 21776 32173 32173 0.19915329941329674 PALLLLLLL 9 Unmodified _PALLLLLLL_ 0 0 0 ENSG00000064687|ENST00000263094|ABCA7;nc|ENSG00000064687|Q8IZY2-2|ABCA7;SEMA6B|p.R276Afs*11|3|0.39|ENSG00000167680|chr19:4552585-4552585|G/-|frameshift_variant;ENSG00000149654|ENST00000537909|CDH22;CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant;nc|ENSG00000125861|Q9GZZ7|GFRA4;nc|ENSG00000134470|Q13261-9|IL15RA;IL15RA|p.L122Sfs*48|1|0.04|ENSG00000134470|chr10:5963761-5963762|-/A|frameshift_variant;ENSG00000134470|ENST00000379977|IL15RA;nc|ENSG00000134470|Q13261-4|IL15RA;nc|ENSG00000134470|Q13261-3|IL15RA;nc|ENSG00000134470|Q13261-5|IL15RA;nc|ENSG00000134470|Q13261-6|IL15RA;nc|ENSG00000134470|Q13261-7|IL15RA;nc|ENSG00000125861|Q9GZZ7-3|GFRA4;nc|ENSG00000134470|Q13261-8|IL15RA;ENSG00000125861|ENST00000290417|GFRA4;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.D535Gfs*13|1|0.23|ENSG00000087116|chr5:179152171-179152172|-/G|frameshift_variant;ADAMTS2|p.L534Wfs*20|2|0.31|ENSG00000087116|chr5:179152172-179152172|G/-|frameshift_variant;nc|ENSG00000087116|O95450-2|ADAMTS2;ADAMTS2|p.R598Pfs*24|1|0.33|ENSG00000087116|chr5:179137929-179137930|-/C|frameshift_variant;ADAMTS2|p.H646Pfs*31|1|0.46|ENSG00000087116|chr5:179137783-179137784|-/G|frameshift_variant;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000167680|ENST00000586582|SEMA6B ENSG00000064687|ENST00000263094|ABCA7;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;nc|ENSG00000167680|Q9H3T3-3|SEMA6B ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2567138671875 2 489.851722 977.68889 NaN NaN NaN NaN NaN NaN NaN 164.14 1 164.14 163.64 164.64 0 0 0 0 0.23508 1 33158 33158 2.3027 0 1 32549 64;1341;5833 21761 21776 32174 32174 0.19915329941329674 PALLLLLWP 9 Unmodified _PALLLLLWP_ 0 0 0 REV__ADGRA2|p.L985Pfs*2|1|0.18|ENSG00000020181|chr8:37841292-37841292|T/-|frameshift_variant REV__ADGRA2|p.L985Pfs*2|1|0.18|ENSG00000020181|chr8:37841292-37841292|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.8828125 3 345.891556 1034.65284 NaN NaN NaN NaN NaN NaN NaN 15.716 1 15.716 15.216 16.216 0 0 0 0 0.23508 1 2410 2410 0.26902 0 1 + 32550 12961 21762 21777 32175 32175 0.13689872764462052 PALLLSSVRPV 11 Unmodified _PALLLSSVRPV_ 0 0 0 ENST00000505306.5_1_17:48154293-48154716:+|nuORF ENST00000505306.5_1_17:48154293-48154716:+|nuORF ENST00000505306.5_1_17:48154293-48154716:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3158569335938 2 576.360973 1150.70739 NaN NaN NaN NaN NaN NaN NaN 108.37 1 104.23 103.73 104.73 -4.135 0 0 0 0.23594 1 20850 20850 3.5965 1.5367 1 32551 10669 21763 21778 32176 32176 0.13806839845233299 PALLRELEGP 10 Unmodified _PALLRELEGP_ 0 0 0 ENST00000422593.5_1_3:49462567-49466699:-|nuORF ENST00000422593.5_1_3:49462567-49466699:-|nuORF ENST00000422593.5_1_3:49462567-49466699:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7827758789062 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 165.24 1 160.29 159.79 160.79 -4.9484 0 0 0 2.8426 1 32274 32274 0.51642 0.45255 1 32552 9681 21764 21779 32177 32177 0.07009701023071102 PALLRLPVRQP 11 Unmodified _PALLRLPVRQP_ 0 0 0 REV__nc|ENSG00000110713|P52948-6|NUP98 REV__nc|ENSG00000110713|P52948-6|NUP98 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7760009765625 2 630.400964 1258.78738 0.36602 0.00023074 0.86766 0.00054697 1.2337 0.00077771 630.905136288819 149.89 0.1387 144.69 144.61 144.75 -5.1994 5 3 2 0 0 0 0.95337 1 29021 29021 5.7319 0 1 2016900 + 32553 15212 21765 21780 32178 32178 0.1683332623908882 PALPAPGRFR 10 Unmodified _PALPAPGRFR_ 0 0 0 ENSG00000185271|ENST00000636854|KLHL33;nc|ENSG00000185271|A6NCF5|KLHL33 ENSG00000185271|ENST00000636854|KLHL33 ENSG00000185271|ENST00000636854|KLHL33 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2835693359375 2 541.3169 1080.61925 NaN NaN NaN NaN NaN NaN NaN 158.57 1 153.3 152.8 153.8 -5.2712 0 0 0 0.22588 1 30768 30768 10.074 0 1 32554 6976 21766 21781 32179 32179 0.08216264045267963 PALPSLAA 8 Unmodified _PALPSLAA_ 0 0 0 nc|ENSG00000218109|Q8N7Y1|KIRREL3-AS3;ENST00000404882.3_1_11:126873339-126874064:+|nuORF nc|ENSG00000218109|Q8N7Y1|KIRREL3-AS3 nc|ENSG00000218109|Q8N7Y1|KIRREL3-AS3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 370.2145690917969 2 370.221072 738.42759 NaN NaN NaN NaN NaN NaN NaN 97.403 1 97.403 96.903 97.903 0 0 0 0 0.23711 1 19088 19088 0.12286 0 1 32555 9529 21767 21782 32180 32180 0.047913432942777945 PALRALLRKL 10 Unmodified _PALRALLRKL_ 0 0 0 ENST00000471757.5_1_2:96691131-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-5|GPAT2;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000482704.1_1_2:96692637-96693504:-|nuORF ENST00000471757.5_1_2:96691131-96693504:-|nuORF ENST00000471757.5_1_2:96691131-96693504:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3323364257812 2 575.892775 1149.771 NaN NaN NaN NaN NaN NaN NaN 34.919 1 32.525 32.025 33.025 -2.3938 0 0 0 0.22588 1 6422 6422 0.45834 0 1 32556 7050 21768 21783 32181 32181 0.20210245072985344 PALRALLRKL 10 Unmodified _PALRALLRKL_ 0 0 0 ENST00000471757.5_1_2:96691131-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-5|GPAT2;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000482704.1_1_2:96692637-96693504:-|nuORF ENST00000471757.5_1_2:96691131-96693504:-|nuORF ENST00000471757.5_1_2:96691131-96693504:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3220825195312 2 575.892775 1149.771 NaN NaN NaN NaN NaN NaN NaN 34.753 1 32.501 32.001 33.001 -2.2527 0 0 0 0.22588 1 6103 6103 0.45834 0 1 32557 7050 21768 21783 32182 32182 0.20210245072985344 PALRKRLKN 9 Unmodified _PALRKRLKN_ 0 0 0 REV__nc|ENSG00000172728|Q6P4F1-3|FUT10 REV__nc|ENSG00000172728|Q6P4F1-3|FUT10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7883911132812 2 548.359099 1094.70365 0.3169 0.00017378 1.2248 0.00067163 1.5417 0.00084541 548.3603656846582 153.72 0.14543 148.95 148.86 149.01 -4.7684 6 3 2 0 0 0 0.87888 1 30533 30533 4.756 0.81161 1 1082700 + 32558 18303 21769 21784 32183 32183 0.16008214862017667 PALRQAVCPQ 10 Unmodified _PALRQAVCPQ_ 0 0 0 REV__ENST00000395103.2_1_8:144806522-144808011:-|nuORF REV__ENST00000395103.2_1_8:144806522-144808011:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26904296875 2 541.792401 1081.57025 0.47823 0.0002591 2.9569 0.001602 3.4351 0.0018611 542.2969504410338 154.59 0.18306 149.34 149.21 149.4 -5.2526 6 4 2 0 0 0 0.86261 1 29974 29974 10.824 6.0679 1 2091400 + 32559 21257 21770 21785 32184 32184 0.03272607694020735 PALVLPAY 8 Unmodified _PALVLPAY_ 0 0 0 REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant REV__F8|p.E1988Rfs*4|1|0.36|ENSG00000185010|chrX:154903942-154903943|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 422.25244140625 2 422.252372 842.49019 NaN NaN NaN NaN NaN NaN NaN 145.78 1 141.09 140.59 141.59 -4.6868 0 0 0 0.23711 1 28901 28901 0.12286 0.11459 1 + 32560 18928 21771 21786 32185 32185 0.06264489362456516 PALVRLLRK 9 Unmodified _PALVRLLRK_ 0 0 0 ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;CTNND1|p.S895Ifs*8|1|0.33|ENSG00000198561|chr11:57814353-57814354|-/A|frameshift_variant;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;CTNND1|p.Q800Tfs*4|1|0.46|ENSG00000198561|chr11:57809427-57809428|-/A|frameshift_variant;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.E842Kfs*10|1|0.19|ENSG00000198561|chr11:57810192-57810192|A/-|frameshift_variant;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;ENST00000527599.1_1_11:57569484-57571277:+|nuORF;nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2 ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000169862|Q9UQB3-2|CTNND2 ENSG00000198561|ENST00000399050|CTNND1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2865600585938 2 533.366393 1064.71823 NaN NaN NaN NaN NaN NaN NaN 164.94 1 160.15 159.65 160.65 -4.7898 0 0 0 0.23508 1 32994 32994 2.0598 0 1 32561 747;6014 21772 21787 32186 32186 0.18846287010183005 PALVRLSLGSH 11 Unmodified _PALVRLSLGSH_ 0 0 0 ENSG00000254470|ENST00000532090|AP5B1;ENST00000316846.2_11:65545618-65547282:-|nuORF ENSG00000254470|ENST00000532090|AP5B1 ENSG00000254470|ENST00000532090|AP5B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 574.981201171875 2 575.340572 1148.66659 0.20101 0.00011565 2.748 0.001581 2.949 0.0016967 575.3415821891465 166.67 0.14175 161.88 161.8 161.95 -4.7898 5 3 2 0 0 0 0.88957 1 33519 33519 3.0723 0.57378 1 10763000 32562 7925 21773 21788 32187 32187 0.09820498525618859 PAMHPPSH 8 Unmodified _PAMHPPSH_ 0 0 0 ENST00000352432.8_2_3:10370089-10370329:-|nuORF ENST00000352432.8_2_3:10370089-10370329:-|nuORF ENST00000352432.8_2_3:10370089-10370329:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21893310546875 2 437.20543 872.396307 NaN NaN NaN NaN NaN NaN NaN 142.86 1 137.83 137.33 138.33 -5.0261 0 0 0 0.23749 1 27542 27542 0.12286 0 1 32563 8930 21774 21789 32188 32188 -0.04499553011464741 PAMTPPAT 8 Unmodified _PAMTPPAT_ 0 0 0 REV__ENSG00000131019|ENST00000367339|ULBP3 REV__ENSG00000131019|ENST00000367339|ULBP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 393.2908020019531 2 393.196739 784.378925 -0.01656 -6.5114E-06 -0.72253 -0.0002841 -0.73909 -0.00029061 393.19638743480726 24.055 0.76704 22.521 22.293 23.06 -1.5342 24 21 2 0 0 0 0.96284 1 3875 3875 19.439 10.846 1 775660 + 32564 16049 21775 21790 32189 32189 -0.021888933371201347 PAMTPPAT 8 Unmodified _PAMTPPAT_ 0 0 0 REV__ENSG00000131019|ENST00000367339|ULBP3 REV__ENSG00000131019|ENST00000367339|ULBP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 393.196739 784.378925 -0.05584 -2.1956E-05 -0.20948 -8.2366E-05 -0.26532 -0.00010432 393.19661958510693 22.6 0.76661 22.6 22.398 23.165 0 0.080114 0.00044039 NaN 19.439 27 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1051000 + 32565 16049 21775 21790 -0.021888933371201347 PAMTPPAT 8 Unmodified _PAMTPPAT_ 0 0 0 REV__ENSG00000131019|ENST00000367339|ULBP3 REV__ENSG00000131019|ENST00000367339|ULBP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 393.196739 784.378925 0.71326 0.00028045 -1.8496 -0.00072724 -1.1363 -0.00044679 393.1957351291229 23.992 0.55983 22.438 22.184 22.744 -1.5532 -0.08121 -0.00084937 NaN 19.439 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 651720 + 32566 16049 21775 21790 -0.021888933371201347 PANFWQEFTSC 11 Unmodified _PANFWQEFTSC_ 0 0 0 REV__nc|ENSG00000080503|P51531-2|SMARCA2;REV__SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant REV__nc|ENSG00000080503|P51531-2|SMARCA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 665.2836303710938 2 665.282063 1328.54957 NaN NaN NaN NaN NaN NaN NaN 168.13 1 163.34 162.84 163.84 -4.7898 0 0 0 0.22943 1 33969 33969 8.7454 2.5396 1 + 32567 14409;15895 21776 21791 32190 32190 -0.10156027476318741 PANKRDYHTRK 11 Unmodified _PANKRDYHTRK_ 0 0 0 REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 463.1663818359375 3 462.584736 1384.73238 0.30111 0.00013929 -0.26679 -0.00012341 0.034313 1.5873E-05 462.5846290575761 29.82 0.45184 27.928 27.719 28.171 -1.8928 24 12 3 0 0 0 0.96192 1 5072 5072 0.45452 0.45452 1 837270 + 32568 24704 21777 21792 32191 32191 0.05540287700478075 PANKRDYHTRK 11 Unmodified _PANKRDYHTRK_ 0 0 0 REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 462.584736 1384.73238 0.22846 0.00010568 -0.17396 -8.0473E-05 0.054498 2.521E-05 462.5847240418795 28.009 0.30933 28.009 27.87 28.18 0 0.071077 0.00026612 NaN 0.45452 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 960170 + 32569 24704 21777 21792 0.05540287700478075 PANKRDYHTRK 11 Unmodified _PANKRDYHTRK_ 0 0 0 REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 462.584736 1384.73238 0.4588 0.00021223 -0.30475 -0.00014097 0.15405 7.126E-05 462.58459589876804 30.013 0.41755 27.896 27.701 28.119 -2.1167 -0.041679 8.4622E-05 NaN 0.45452 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 837760 + 32570 24704 21777 21792 0.05540287700478075 PANKRDYHTRK 11 Unmodified _PANKRDYHTRK_ 0 0 0 REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 462.584736 1384.73238 0.55092 0.00025485 -0.66617 -0.00030816 -0.11526 -5.3315E-05 462.5844784951715 29.992 0.35033 27.918 27.76 28.11 -2.0743 -0.019496 -0.00041694 NaN 0.45452 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 998120 + 32571 24704 21777 21792 0.05540287700478075 PANLFSLPP 9 Unmodified _PANLFSLPP_ 0 0 0 ENSG00000100379|ENST00000403888|KCTD17 ENSG00000100379|ENST00000403888|KCTD17 ENSG00000100379|ENST00000403888|KCTD17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.189208984375 3 319.179766 954.517468 NaN NaN NaN NaN NaN NaN NaN 33.37 1 31.154 30.654 31.654 -2.2158 0 0 0 0.23508 1 5814 5814 1.1933 0.41681 1 32572 1967 21778 21793 32192 32192 0.0383897290286086 PANVWSDDLY 10 Unmodified _PANVWSDDLY_ 0 0 0 REV__CEP350|p.K1725Nfs*24|1|0.43|ENSG00000135837|chr1:180053928-180053928|A/-|frameshift_variant REV__CEP350|p.K1725Nfs*24|1|0.43|ENSG00000135837|chr1:180053928-180053928|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2740478515625 2 590.269478 1178.5244 NaN NaN NaN NaN NaN NaN NaN 118.52 1 118.52 118.02 119.02 0 0 0 0 0.22588 1 23344 23344 7.2892 0 1 + 32573 13381 21779 21794 32193 32193 -0.05771759007234323 PAPAELDPRE 10 Unmodified _PAPAELDPRE_ 0 0 0 REV__nc|ENSG00000197892|Q9NQT8-2|KIF13B REV__nc|ENSG00000197892|Q9NQT8-2|KIF13B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7769775390625 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 165.46 1 165.46 164.96 165.96 0 0 0 0 0.22588 1 33579 33579 10.824 1.4408 1 + 32574 19370 21780 21795 32194 32194 -0.0026405277033063612 PAPARRFDGG 10 Unmodified _PAPARRFDGG_ 0 0 0 REV__nc|ENSG00000069020|O15021-2|MAST4 REV__nc|ENSG00000069020|O15021-2|MAST4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2740478515625 2 522.27269 1042.53083 NaN NaN NaN NaN NaN NaN NaN 171.5 1 166.71 166.21 167.21 -4.7898 0 0 0 0.22588 1 34874 34874 10.074 2.7847 1 + 32575 14237 21781 21796 32195 32195 0.01126223734809173 PAPATTLAQPQ 11 Unmodified _PAPATTLAQPQ_ 0 0 0 nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L nc|ENSG00000143569|Q14157-4|UBAP2L nc|ENSG00000143569|Q14157-4|UBAP2L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7804565429688 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 166.53 1 161.58 161.08 162.08 -4.9484 0 0 0 0.22501 1 32647 32647 12.241 1.4167 1 32576 4505 21782 21797 32196 32196 0.03372824126358864 PAPFAGGTRG 10 Unmodified _PAPFAGGTRG_ 0 0 0 REV__LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant REV__LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2383728027344 2 465.743234 929.471915 0.2697 0.00012561 0.10695 4.9813E-05 0.37665 0.00017542 465.74307581782136 30.944 0.45789 28.918 28.671 29.129 -2.0264 32 12 4 0 0 0 0.89521 1 5363 5363 10.824 4.1008 1 3634900 + 32577 23794 21783 21798 32197 32197 0.004357474404741879 PAPGDTGP 8 Unmodified _PAPGDTGP_ 0 0 0 nc|ENSG00000284797|A0A2R8Y7Y5|CIST1 nc|ENSG00000284797|A0A2R8Y7Y5|CIST1 nc|ENSG00000284797|A0A2R8Y7Y5|CIST1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.1705322265625 2 356.169036 710.323519 NaN NaN NaN NaN NaN NaN NaN 71.247 1 67.78 67.28 68.28 -3.467 0 0 0 0.23711 1 13502 13502 0.12286 0 1 32578 12647 21784 21799 32198 32198 -0.04322983533234037 PAPGGHLL 8 Unmodified _PAPGGHLL_ 0 0 0 REV__ENST00000475704.2_1_9:140728608-140729402:+|nuORF REV__ENST00000475704.2_1_9:140728608-140729402:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2187805175781 2 381.218863 760.423173 -0.19129 -7.2925E-05 0.28507 0.00010867 0.093776 3.5749E-05 381.2189116999908 54.435 0.55711 54.435 54.172 54.729 0 26 15 2 0 0 0 8448 1 10438 10438 0.0082765 0 1 1680000 + 32579 22099 21785 21800 32199 32199 0.03337878871388966 PAPGGHSP 8 Unmodified _PAPGGHSP_ 0 0 0 ENST00000601800.5_1_19:49982251-49989456:+|nuORF ENST00000601800.5_1_19:49982251-49989456:+|nuORF ENST00000601800.5_1_19:49982251-49989456:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 359.8832092285156 2 360.177195 718.339838 NaN NaN NaN NaN NaN NaN NaN 56.412 1 53.223 52.723 53.723 -3.1895 0 0 0 0.23782 1 10456 10456 0.62683 0.50396 1 32580 11708 21786 21801 32200 32200 -0.03059857576477043 PAPGTSVGPG 10 Unmodified _PAPGTSVGPG_ 0 0 0 ENST00000371021.4_1_10:99079710-99079944:+|nuORF ENST00000371021.4_1_10:99079710-99079944:+|nuORF ENST00000371021.4_1_10:99079710-99079944:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 420.31878662109375 2 420.216517 838.418482 -0.415 -0.00017439 0.31915 0.00013411 -0.095847 -4.0277E-05 420.2165676322008 40.042 0.81544 37.493 36.999 37.815 -2.5491 33 22 2 0 0 0 0.88157 1 7520 7520 4.3292 0 1 865350 32581 9150 21787 21802 32201 32201 -0.007190500620367857 PAPHASSSPP 10 Unmodified _PAPHASSSPP_ 0 0 0 MBD6|p.P931Lfs*15|1|0.41|ENSG00000166987|chr12:57528528-57528528|C/-|frameshift_variant;MBD6|p.F318Sfs*59|1|0.21|ENSG00000166987|chr12:57525914-57525914|C/-|frameshift_variant;MBD6|p.P478Hfs*9|1|0.21|ENSG00000166987|chr12:57526575-57526575|C/-|frameshift_variant;MBD6|p.P443Qfs*44|1|0.22|ENSG00000166987|chr12:57526292-57526292|C/-|frameshift_variant;MBD6|p.P671Lfs*4|2|0.31|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant;MBD6|p.P666Hfs*9|1|0.26|ENSG00000166987|chr12:57527137-57527137|C/-|frameshift_variant;MBD6|p.Q694Sfs*5|7|0.43|ENSG00000166987|chr12:57527219-57527219|C/-|frameshift_variant;MBD6|p.T672Yfs*45|1|0.54|ENSG00000166987|chr12:57527150-57527151|-/C|frameshift_variant;MBD6|p.Q734Nfs*18|4|0.41|ENSG00000166987|chr12:57527618-57527618|C/-|frameshift_variant;MBD6|p.R878Pfs*26|1|0.34|ENSG00000166987|chr12:57528369-57528406|GGCCGAAAGCCTGGCAGCCGGCGGGAGCCTGGCCGACT/-|frameshift_variant;MBD6|p.G877Afs*69|1|0.53|ENSG00000166987|chr12:57528367-57528367|G/-|frameshift_variant;ENSG00000166987|ENST00000355673|MBD6 MBD6|p.P931Lfs*15|1|0.41|ENSG00000166987|chr12:57528528-57528528|C/-|frameshift_variant MBD6|p.P931Lfs*15|1|0.41|ENSG00000166987|chr12:57528528-57528528|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 474.73431396484375 2 474.232699 946.450845 -0.18298 -8.6776E-05 0.2626 0.00012453 0.079617 3.7757E-05 474.2327518505078 54.684 1.272 54.684 53.886 55.158 0 94 35 4 0 0 0 1.1246 1 10280 10280 0.26539 0 1 11910000 32582 12115 21788 21803 32202 32202 -0.024522626590396612 PAPIQFVHDQ 10 Unmodified _PAPIQFVHDQ_ 0 0 0 REV__ENSG00000154274|ENST00000381980|C4orf19 REV__ENSG00000154274|ENST00000381980|C4orf19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.334228515625 2 576.29583 1150.57711 NaN NaN NaN NaN NaN NaN NaN 141.75 1 141.75 141.25 142.25 0 0 0 0 0.22588 1 28254 28254 10.074 1.3285 1 + 32583 17175 21789 21804 32203 32203 0.007842438462375867 PAPKAHPG 8 Unmodified _PAPKAHPG_ 0 0 0 ENST00000603475.1_1_9:90582379-90582652:-|nuORF;ENST00000459720.5_1_9:90582379-90584273:-|nuORF;ENST00000486228.7_1_9:90582379-90585754:-|nuORF;nc|ENSG00000156345|Q8IZL9-5|CDK20;CDK20|p.H319Tfs*16|1|0.17|ENSG00000156345|chr9:87967548-87967548|G/-|frameshift_variant;nc|ENSG00000156345|Q8IZL9-4|CDK20;ENSG00000156345|ENST00000325303|CDK20 ENST00000603475.1_1_9:90582379-90582652:-|nuORF ENST00000603475.1_1_9:90582379-90582652:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71624755859375 2 387.716488 773.418422 NaN NaN NaN NaN NaN NaN NaN 44.757 1 41.967 41.467 42.467 -2.79 0 0 0 0.21486 1 8416 8416 5.7604 0 1 32584 470 21790 21805 32204 32204 0.022649947286026872 PAPKNHNY 8 Unmodified _PAPKNHNY_ 0 0 0 ENST00000494171.5_1_2:202212946-202216133:-|nuORF;ENST00000448967.1_1_2:202173962-202216133:-|nuORF;ENSG00000155749|ENST00000392257|FLACC1;nc|ENSG00000155749|Q96Q35|FLACC1 ENST00000494171.5_1_2:202212946-202216133:-|nuORF ENST00000494171.5_1_2:202212946-202216133:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1595764160156 3 314.159365 939.456264 NaN NaN NaN NaN NaN NaN NaN 82.233 1 78.36 77.86 78.86 -3.8736 0 0 0 0.21486 1 15622 15622 3.9444 0 1 32585 5058 21791 21806 32205 32205 -0.01588539076590223 PAPLALIQP 9 Unmodified _PAPLALIQP_ 0 0 0 ENST00000366903.7_1_1:221052858-221052999:+|nuORF ENST00000366903.7_1_1:221052858-221052999:+|nuORF ENST00000366903.7_1_1:221052858-221052999:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24078369140625 2 460.284203 918.553853 -0.011135 -5.1254E-06 0.39473 0.00018169 0.38359 0.00017656 460.2842304090052 26.203 0.31442 24.281 24.122 24.436 -1.9222 11 8 2 0 0 0 0.86532 1 4321 4321 2.0598 0 1 248190 32586 9052 21792 21807 32206 32206 0.09131849799553038 PAPLLLLLL 9 Unmodified _PAPLLLLLL_ 0 0 0 REV__IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant REV__IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7734069824219 2 481.836071 961.65759 NaN NaN NaN NaN NaN NaN NaN 14.356 1 13.183 12.683 13.683 -1.173 0 0 0 0.23508 1 1936 1936 2.3027 0 1 + 32587 23648 21793 21808 32207 32207 0.17522756907226267 PAPNLLHAF 9 Unmodified _PAPNLLHAF_ 0 0 0 REV__ENSG00000158435|ENST00000289382|CNOT11 REV__ENSG00000158435|ENST00000289382|CNOT11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2725524902344 2 490.271627 978.528701 NaN NaN NaN NaN NaN NaN NaN 148.53 1 148.53 148.03 149.03 0 0 0 0 0.23508 1 29727 29727 12.532 0.89125 1 + 32588 17333 21794 21809 32208 32208 0.03857794996974917 PAPPAKLG 8 Unmodified _PAPPAKLG_ 0 0 0 REV__ENSG00000174106|ENST00000308330|LEMD3 REV__ENSG00000174106|ENST00000308330|LEMD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.1868591308594 2 375.729064 749.443575 0.39681 0.00014909 -0.50253 -0.00018881 -0.10572 -3.9722E-05 375.7288936671552 29.389 0.35485 27.433 27.263 27.618 -1.9561 14 9 2 0 0 0 0.89687 1 5257 5257 3.5871 0 1 445540 + 32589 18392 21795 21810 32209 32209 0.05883049531189499 PAPPAKLG 8 Unmodified _PAPPAKLG_ 0 0 0 REV__ENSG00000174106|ENST00000308330|LEMD3 REV__ENSG00000174106|ENST00000308330|LEMD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 375.729064 749.443575 -0.10796 -4.0563E-05 0.41567 0.00015618 0.30771 0.00011562 375.7290336740279 27.709 0.34692 27.709 27.454 27.801 0 0.23938 0.00037726 NaN 3.5871 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 606990 + 32590 18392 21795 21810 0.05883049531189499 PAPPAKLG 8 Unmodified _PAPPAKLG_ 0 0 0 REV__ENSG00000174106|ENST00000308330|LEMD3 REV__ENSG00000174106|ENST00000308330|LEMD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 375.729064 749.443575 -0.22332 -8.3908E-05 0.083731 3.146E-05 -0.13959 -5.2448E-05 375.7290121494893 29.342 0.34596 27.267 27.137 27.483 -2.0743 -0.20265 0.00012782 NaN 3.5871 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 451030 + 32591 18392 21795 21810 0.05883049531189499 PAPPALTE 8 Unmodified _PAPPALTE_ 0 0 0 REV__ENST00000223095.4_1_7:100781640-100781877:+|nuORF REV__ENST00000223095.4_1_7:100781640-100781877:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 398.21624755859375 2 398.215986 794.417419 NaN NaN NaN NaN NaN NaN NaN 53.093 1 50.21 49.71 50.71 -2.8837 0 0 0 0.21486 1 10111 10111 5.7604 0 1 + 32592 20040 21796 21811 32210 32210 0.011987355690507684 PAPPLLLLL 9 Unmodified _PAPPLLLLL_ 0 0 0 REV__nc|ENSG00000184164|Q6UXH1-2|CRELD2 REV__nc|ENSG00000184164|Q6UXH1-2|CRELD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.217041015625 3 316.21604 945.62629 NaN NaN NaN NaN NaN NaN NaN 94.144 1 90.153 89.653 90.653 -3.9907 0 0 0 0.1963 1 18443 18443 0 0 1 + 32593 18882 21797 21812 32211 32211 0.15130183873145597 PAPPPWYVESR 11 Unmodified _PAPPPWYVESR_ 0 0 0 ENST00000532256.1_1_11:14541757-14541880:-|nuORF ENST00000532256.1_1_11:14541757-14541880:-|nuORF ENST00000532256.1_1_11:14541757-14541880:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.88958740234375 3 433.555784 1297.64552 -0.29104 -0.00012618 2.0923 0.00090712 1.8013 0.00078094 433.5580957417472 50.907 0.56259 48.025 47.786 48.348 -2.8824 21 15 2 0 0 0 0.80429 1 9677 9677 3.0723 0 1 659350 32594 10980 21798 21813 32212 32212 0.008604884260876133 PAPQEWLQL 9 Unmodified _PAPQEWLQL_ 0 0 0 WNK1|p.K26Qfs*51|1|0.42|ENSG00000060237|chr12:753635-753636|-/C|frameshift_variant WNK1|p.K26Qfs*51|1|0.42|ENSG00000060237|chr12:753635-753636|-/C|frameshift_variant WNK1|p.K26Qfs*51|1|0.42|ENSG00000060237|chr12:753635-753636|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.277099609375 2 541.287474 1080.5604 0.31711 0.00017165 -0.18392 -9.9556E-05 0.13318 7.2091E-05 541.2872657898442 136.84 0.97598 132 131.69 132.66 -4.84 60 27 3 0 0 0 0.32428 1 26330 26330 30.225 3.3412 1 5378200 32595 26579 21799 21814 32213 32213 0.023337429602634074 PAPQSGQAPPP 11 Unmodified _PAPQSGQAPPP_ 0 0 0 ENST00000609274.5_2_19:15562735-15563116:-|nuORF;ENST00000602101.6_1_19:15562608-15563116:-|nuORF ENST00000609274.5_2_19:15562735-15563116:-|nuORF ENST00000609274.5_2_19:15562735-15563116:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6795043945312 2 523.766906 1045.51926 0.24278 0.00012716 -0.57651 -0.00030196 -0.33373 -0.0001748 523.7665747569633 26.892 0.82129 26.892 26.53 27.351 0 33 23 2 0 0 0 0.87468 1 4665 4665 15.248 5.1746 1 819490 32596 11711 21800 21815 32214 32214 -0.0016801807919364364 PAPSDCDQP 9 Unmodified _PAPSDCDQP_ 0 0 0 REV__ENST00000549526.1_1_12:50493222-50493899:+|nuORF REV__ENST00000549526.1_1_12:50493222-50493899:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23809814453125 2 465.1871 928.359646 -0.049199 -2.2887E-05 0.77312 0.00035965 0.72392 0.00033676 465.1875978596601 46.302 0.41772 43.437 43.275 43.692 -2.8653 19 11 2 0 0 0 0.54076 1 8427 8427 14.838 2.3067 1 606370 + 32597 22920 21801 21816 32215 32215 -0.10739894418702534 PAPSHRCLV 9 Unmodified _PAPSHRCLV_ 0 0 0 ENST00000259371.6_1_9:124546428-124546671:+|nuORF ENST00000259371.6_1_9:124546428-124546671:+|nuORF ENST00000259371.6_1_9:124546428-124546671:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2608642578125 2 490.260736 978.50692 NaN NaN NaN NaN NaN NaN NaN 144.61 1 139.55 139.05 140.05 -5.0671 0 0 0 0.19451 1 27907 27907 0.40827 0 1 32598 8273 21802 21817 32216 32216 0.016806669767788662 PAPSKGHLR 9 Unmodified _PAPSKGHLR_ 0 0 0 ERBB2|p.A1232Lfs*70|2|0.3|ENSG00000141736|chr17:39727965-39727965|G/-|frameshift_variant ERBB2|p.A1232Lfs*70|2|0.3|ENSG00000141736|chr17:39727965-39727965|G/-|frameshift_variant ERBB2|p.A1232Lfs*70|2|0.3|ENSG00000141736|chr17:39727965-39727965|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7815856933594 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 164.44 1 159.4 158.9 159.9 -5.0446 0 0 0 0.22621 1 32068 32068 15.847 3.6065 1 32599 11778 21803 21818 32217 32217 0.06343715602804423 PAPTALAAG 9 Unmodified _PAPTALAAG_ 0 0 0 REV__ENSG00000273514|ENST00000622588|FOXD4L6 REV__ENSG00000273514|ENST00000622588|FOXD4L6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 384.87371826171875 2 384.716153 767.417754 NaN NaN NaN NaN NaN NaN NaN 130.04 1 130.04 129.54 130.54 0 0 0 0 0.19451 1 25694 25694 0.87518 0.19379 1 + 32600 19097 21804 21819 32218 32218 0.02474155288905422 PAPTGHGP 8 Unmodified _PAPTGHGP_ 0 0 0 ENST00000567066.6_1_16:31483405-31488894:+|nuORF ENST00000567066.6_1_16:31483405-31488894:+|nuORF ENST00000567066.6_1_16:31483405-31488894:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.1797790527344 2 367.18502 732.355488 NaN NaN NaN NaN NaN NaN NaN 65.674 1 62.216 61.716 62.716 -3.4581 0 0 0 0.23366 1 12295 12295 0.68139 0 1 32601 11374 21805 21820 32219 32219 -0.021395710594219963 PAPVVIILI 9 Unmodified _PAPVVIILI_ 0 0 0 nc|ENSG00000250361|P06028-2|GYPB;ENST00000505583.5_1_4:144917454-144923733:-|nuORF;ENSG00000250361|ENST00000502664|GYPB;ENST00000503255.5_1_4:144918665-144940440:-|nuORF;ENST00000506516.5_1_4:144917454-144940421:-|nuORF;ENST00000510196.6_1_4:144917454-144940410:-|nuORF;ENST00000504951.6_1_4:144917454-144923766:-|nuORF nc|ENSG00000250361|P06028-2|GYPB nc|ENSG00000250361|P06028-2|GYPB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.2088317871094 3 312.21604 933.62629 NaN NaN NaN NaN NaN NaN NaN 87.464 1 87.464 86.964 87.964 0 0 0 0 0.23508 1 17076 17076 0.26902 0 1 32602 7904 21806 21821 32220 32220 0.1568218387315028 PAPWCMNDMS 10 Unmodified _PAPWCMNDMS_ 0 0 0 REV__XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant REV__XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32373046875 2 576.219562 1150.42457 NaN NaN NaN NaN NaN NaN NaN 147.23 1 142.12 141.62 142.62 -5.1108 0 0 0 2.8426 1 28489 28489 0.013265 0 1 + 32603 15365 21807 21822 32221 32221 -0.1446235920871004 PAQALYPDS 9 Unmodified _PAQALYPDS_ 0 0 0 REV__ENSG00000173638|ENST00000311124|SLC19A1 REV__ENSG00000173638|ENST00000311124|SLC19A1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23602294921875 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 165.5 1 160.71 160.21 161.21 -4.7898 0 0 0 0.22251 1 33150 33150 16.942 3.0362 1 + 32604 18365 21808 21823 32222 32222 -0.02654798236142142 PAQILWTCD 9 Unmodified _PAQILWTCD_ 0 0 0 REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7011108398438 2 523.75241 1045.49027 NaN NaN NaN NaN NaN NaN NaN 165.47 1 160.49 159.99 160.99 -4.9811 0 0 0 0.23277 1 32347 32347 13.906 4.5586 1 + 32605 13614 21809 21824 32223 32223 -0.03065878699840141 PAQNWTPPQP 10 Unmodified _PAQNWTPPQP_ 0 0 0 ENST00000524192.6_1_20:61904210-61909556:+|nuORF;ENST00000519531.5_1_20:61904210-61914317:+|nuORF;ARFGAP1|p.S295Ffs*42|1|0.48|ENSG00000101199|chr20:63286407-63286408|-/T|frameshift_variant;nc|ENSG00000101199|Q8N6T3-5|ARFGAP1;nc|ENSG00000101199|Q8N6T3-3|ARFGAP1;ENSG00000101199|ENST00000370283|ARFGAP1;nc|ENSG00000101199|Q8N6T3-2|ARFGAP1 ENST00000524192.6_1_20:61904210-61909556:+|nuORF ENST00000524192.6_1_20:61904210-61909556:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 568.1873779296875 2 568.28018 1134.54581 NaN NaN NaN NaN NaN NaN NaN 171.94 1 167.15 166.65 167.65 -4.7898 0 0 0 0.22588 1 34994 34994 10.074 0.6908 1 32606 195 21810 21825 32224 32224 -0.0160832918786582 PAQPSMEHGK 10 Unmodified _PAQPSMEHGK_ 0 0 0 REV__nc|ENSG00000102854|Q13421|MSLN REV__nc|ENSG00000102854|Q13421|MSLN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2596435546875 2 541.258391 1080.50223 NaN NaN NaN NaN NaN NaN NaN 166.37 1 161.39 160.89 161.89 -4.9811 0 0 0 0.22535 1 32602 32602 20.454 4.6064 1 + 32607 23980 21811 21826 32225 32225 -0.034802619566335125 PAQQKRIRR 9 Unmodified _PAQQKRIRR_ 0 0 0 GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;ENST00000496455.6_1_3:155640065-155643090:+|nuORF GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3199462890625 2 576.857255 1151.69996 0.48381 0.00027909 -1.0841 -0.00062535 -0.60026 -0.00034626 576.856931712807 30.488 0.28007 28.371 28.259 28.539 -2.1167 10 7 2 0 0 0 0.88278 1 5528 5528 0.52476 0 1 429100 32608 11855 21812 21827 32226 32226 0.1301754508817794 PAQQNLKKKP 10 Unmodified _PAQQNLKKKP_ 0 0 0 ENST00000330843.8_1_8:37728035-37728973:-|nuORF ENST00000330843.8_1_8:37728035-37728973:-|nuORF ENST00000330843.8_1_8:37728035-37728973:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3179931640625 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 165.06 1 160.27 159.77 160.77 -4.7898 0 0 0 0.22588 1 33027 33027 6.7232 1.8262 1 32609 8772 21813 21828 32227 32227 0.11292785042633113 PAQRCFEG 8 Unmodified _PAQRCFEG_ 0 0 0 ENST00000407537.5_1_22:19948784-19949230:+|nuORF ENST00000407537.5_1_22:19948784-19949230:+|nuORF ENST00000407537.5_1_22:19948784-19949230:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7601013183594 2 454.20817 906.401786 NaN NaN NaN NaN NaN NaN NaN 88.872 1 85.122 84.622 85.622 -3.7501 0 0 0 0.23366 1 17015 17015 0.063987 0 1 32610 9550 21814 21829 32228 32228 -0.055158742196454114 PAQRGLYRN 9 Unmodified _PAQRGLYRN_ 0 0 0 ENST00000528028.1_1_8:146115306-146115737:-|nuORF;nc|ENSG00000196150|P15622-2|ZNF250;ENSG00000196150|ENST00000417550|ZNF250;nc|ENSG00000196150|P15622|ZNF250 ENST00000528028.1_1_8:146115306-146115737:-|nuORF ENST00000528028.1_1_8:146115306-146115737:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 538.14501953125 2 537.793789 1073.57303 -0.50465 -0.0002714 0.80281 0.00043175 0.29816 0.00016035 537.794161388447 13.747 0.24827 12.669 12.555 12.804 -1.0779 9 6 2 0 0 0 0.87258 1 2034 2034 0.45834 0.45834 1 919220 32611 7235 21815 21830 32229 32229 0.0391819914318603 PAQRGLYRN 9 Unmodified _PAQRGLYRN_ 0 0 0 ENST00000528028.1_1_8:146115306-146115737:-|nuORF;nc|ENSG00000196150|P15622-2|ZNF250;ENSG00000196150|ENST00000417550|ZNF250;nc|ENSG00000196150|P15622|ZNF250 ENST00000528028.1_1_8:146115306-146115737:-|nuORF ENST00000528028.1_1_8:146115306-146115737:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 537.793789 1073.57303 0.084275 4.5322E-05 0.17392 9.3531E-05 0.25819 0.00013885 537.7939383631857 12.996 0.2041 12.996 12.894 13.098 0 0.16356 -0.00032257 NaN 0.45834 9 5 3 NaN NaN NaN NaN 0 NaN NaN 0 1161000 32612 7235 21815 21830 0.0391819914318603 PAQRKYVVHPQ 11 Unmodified _PAQRKYVVHPQ_ 0 0 0 REV__ENSG00000136378|ENST00000388820|ADAMTS7;REV__ENST00000565793.5_1_15:79069566-79092863:-|nuORF REV__ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 662.2540893554688 2 661.870028 1321.7255 1.0811 0.00071554 1.6439 0.001088 2.725 0.0018036 661.8714591933312 165.98 0.10086 161.19 161.12 161.22 -4.7898 4 2 2 0 0 0 0.95894 1 33286 33286 2.7352 0 1 10938000 + 32613 16326;23115 21816 21831 32230 32230 0.07750974819941803 PAQRRGLKR 9 Unmodified _PAQRRGLKR_ 0 0 0 nc|ENSG00000108604|Q92925-3|SMARCD2;SMARCD2|p.P489Lfs*19|1|0.36|ENSG00000108604|chr17:63833145-63833145|G/-|frameshift_variant;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2673950195312 2 541.338698 1080.66284 0.185 0.00010015 -3.1639 -0.0017128 -2.9789 -0.0016126 541.8393692853073 148.7 0.17929 143.54 143.4 143.58 -5.1557 5 4 2 0 0 0 0.84208 1 28771 28771 7.2892 2.96 1 1188000 32614 2490 21817 21832 32231 32231 0.12573873542419278 PAQSPQALPA 10 Unmodified _PAQSPQALPA_ 0 0 0 REV__CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant REV__CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2735900878906 2 490.263999 978.513445 0.17497 8.5784E-05 0.35871 0.00017586 0.53368 0.00026164 490.26396477223466 59.697 1.4825 56.384 55.742 57.224 -3.3139 148 41 6 0 0 0 0.44731 1 11097 11097 27.629 0.74515 1 37594000 + 32615 13435 21818 21833 32232 32232 0.023328834091216777 PAQTIVNVASS 11 Unmodified _PAQTIVNVASS_ 0 0 0 REV__ENST00000566288.1_1_15:42040980-42042834:+|nuORF REV__ENST00000566288.1_1_15:42040980-42042834:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7872314453125 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 164.74 1 164.74 164.24 165.24 0 0 0 0 0.22595 1 33348 33348 11.495 0.67078 1 + 32616 18398 21819 21834 32233 32233 0.032325202637593975 PARAGLWRAGP 11 Unmodified _PARAGLWRAGP_ 0 0 0 REV__ENST00000458669.1_1_16:16425757-16427707:+|nuORF REV__ENST00000458669.1_1_16:16425757-16427707:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.336669921875 2 576.325257 1150.63596 0.30022 0.00017303 1.9258E-05 1.1099E-08 0.30024 0.00017304 576.8258496137565 161.26 0.10962 156.03 155.97 156.08 -5.2299 4 2 2 0 0 0 0.75285 1 31321 31321 8.1555 0 1 1774600 + 32617 21866 21820 21835 32234 32234 0.06666764931196667 PAREAELPP 9 Unmodified _PAREAELPP_ 0 0 0 REV__ENSG00000109265|ENST00000682029|CRACD REV__ENSG00000109265|ENST00000682029|CRACD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2661437988281 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 120.8 1 116.28 115.78 116.78 -4.5221 0 0 0 0.18755 1 23815 23815 1.6919 0 1 + 32618 15158 21821 21836 32235 32235 0.023328834091330464 PAREERERAPP 11 Unmodified _PAREERERAPP_ 0 0 0 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2306213378906 3 436.565342 1306.6742 -0.045966 -2.0067E-05 -0.34153 -0.0001491 -0.38749 -0.00016917 436.56527466262423 39.535 0.66592 37.13 36.823 37.489 -2.4049 54 18 4 0 0 0 0.81642 1 7007 7007 1.4551 0 1 7471100 32619 5298 21822 21837 32236 32236 0.03312606055237666 PARGAGHLQ 9 Unmodified _PARGAGHLQ_ 0 0 0 ENST00000541676.5_2_16:84215206-84215414:-|nuORF ENST00000541676.5_2_16:84215206-84215414:-|nuORF ENST00000541676.5_2_16:84215206-84215414:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7473449707031 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 94.434 1 90.59 90.09 91.09 -3.844 0 0 0 0.23508 1 18118 18118 11.64 3.7301 1 32620 11080 21823 21838 32237 32237 0.02662569534618342 PARKGHLQ 8 Unmodified _PARKGHLQ_ 0 0 0 ENST00000373991.3_1_20:34542651-34542879:-|nuORF ENST00000373991.3_1_20:34542651-34542879:-|nuORF ENST00000373991.3_1_20:34542651-34542879:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.76751708984375 2 453.767043 905.519533 NaN NaN NaN NaN NaN NaN NaN 164.53 1 164.53 164.03 165.03 0 0 0 0 0.21039 1 33282 33282 16.942 2.3606 1 32621 9211 21824 21839 32238 32238 0.06299446431319211 PARKKILLLV 10 Unmodified _PARKKILLLV_ 0 0 0 REV__ENSG00000130560|ENST00000371756|UBAC1 REV__ENSG00000130560|ENST00000371756|UBAC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.315673828125 2 575.905351 1149.79615 0.29543 0.00017014 3.5956 0.0020707 3.891 0.0022409 576.4081134910367 140.49 0.13766 140.49 140.44 140.58 0 5 3 2 0 0 0 0.91149 1 27992 27992 0 0 1 2578200 + 32622 16015 21825 21840 32239 32239 0.22724299875540055 PARKRKRR 8 Unmodified _PARKRKRR_ 0 0 0 ENSG00000283297|ENST00000637658|TEX52 ENSG00000283297|ENST00000637658|TEX52 ENSG00000283297|ENST00000637658|TEX52 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 534.4482421875 2 534.354683 1066.69481 NaN NaN NaN NaN NaN NaN NaN 172.37 1 167.49 166.99 167.99 -4.881 0 0 0 0.21486 1 34209 34209 2.5775 0.27475 1 32623 8056 21826 21841 32240 32240 0.16413286016222628 PARKTNKTS 9 Unmodified _PARKTNKTS_ 0 0 0 REV__ENSG00000145911|ENST00000274605|N4BP3 REV__ENSG00000145911|ENST00000274605|N4BP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 335.18505859375 3 334.861207 1001.56179 NaN NaN NaN NaN NaN NaN NaN 52.924 1 50.04 49.54 50.54 -2.8837 0 0 0 0.23508 1 10078 10078 2.4985 0.84587 1 + 32624 16861 21827 21842 32241 32241 0.06107377049022489 PARLKAGP 8 Unmodified _PARLKAGP_ 0 0 0 REV__ENST00000313737.5_1_12:31477768-31478254:+|nuORF REV__ENST00000313737.5_1_12:31477768-31478254:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.3002014160156 2 405.253237 808.491922 NaN NaN NaN NaN NaN NaN NaN 43.525 1 40.777 40.277 41.277 -2.7475 0 0 0 0.21486 1 7860 7860 6.3541 0 1 + 32625 20505 21828 21843 32242 32242 0.08001543171076264 PARLLLLLLL 10 Unmodified _PARLLLLLLL_ 0 0 0 ENSG00000136928|ENST00000259455|GABBR2 ENSG00000136928|ENST00000259455|GABBR2 ENSG00000136928|ENST00000259455|GABBR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 567.9031372070312 2 567.902277 1133.79 NaN NaN NaN NaN NaN NaN NaN 165.77 1 160.98 160.48 161.48 -4.7898 0 0 0 0.22588 1 33232 33232 1.8442 0.19162 1 32626 4052 21829 21844 32243 32243 0.22845781644036833 PARLPFRLL 9 Unmodified _PARLPFRLL_ 0 0 0 ENSG00000084092|ENST00000264230|NOA1 ENSG00000084092|ENST00000264230|NOA1 ENSG00000084092|ENST00000264230|NOA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.277587890625 2 541.845294 1081.67603 0.3309 0.0001793 -4.2796 -0.0023189 -3.9487 -0.0021396 542.3441631791624 145.25 0.20418 145.25 145.07 145.27 0 6 5 2 0 0 0 0.56979 1 29003 29003 1.2148 0.94944 1 2455800 32627 1663 21830 21845 32244 32244 0.1384631160178742 PARLSQARF 9 Unmodified _PARLSQARF_ 0 0 0 nc|ENSG00000214357|A8MQ27-2|NEURL1B;ENSG00000214357|ENST00000369800|NEURL1B nc|ENSG00000214357|A8MQ27-2|NEURL1B nc|ENSG00000214357|A8MQ27-2|NEURL1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.69970703125 2 523.298707 1044.58286 -0.12782 -6.689E-05 -2.9649 -0.0015515 -3.0927 -0.0016184 523.799772683461 143 0.19891 138.34 138.27 138.47 -4.656 6 5 2 0 0 0 0.76271 1 28279 28279 10.074 2.1638 1 2169600 32628 7724 21831 21846 32245 32245 0.06235387148535665 PARPPRLPLRS 11 Unmodified _PARPPRLPLRS_ 0 0 0 REV__ENST00000377403.6_1_1:9294861-9305106:+|nuORF REV__ENST00000377403.6_1_1:9294861-9305106:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.775146484375 2 630.388388 1258.76222 0.37328 0.00023531 -4.4337 -0.002795 -4.0605 -0.0025597 630.3861078233499 151.31 0.103 146.07 146.01 146.11 -5.2365 4 2 2 0 0 0 0.96036 1 29324 29324 4.897 0 1 1099000 + 32629 21095 21832 21847 32246 32246 0.14319271436511372 PARQVHIRRQ 10 Unmodified _PARQVHIRRQ_ 0 0 0 REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.764404296875 2 630.873437 1259.73232 NaN NaN NaN NaN NaN NaN NaN 133.2 1 133.2 132.7 133.7 0 0 0 0 0.22588 1 26348 26348 6.2058 0.9089 1 + 32630 21278 21833 21848 32247 32247 0.11284332491186433 PARRKLRLA 9 Unmodified _PARRKLRLA_ 0 0 0 ENSG00000198889|ENST00000371126|DCAF12L1 ENSG00000198889|ENST00000371126|DCAF12L1 ENSG00000198889|ENST00000371126|DCAF12L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2608642578125 2 540.859267 1079.70398 0.3026 0.00016367 -2.1759 -0.0011768 -1.8733 -0.0010132 540.8571862046142 135.51 0.20924 130.68 130.63 130.84 -4.8307 9 5 2 0 0 0 0.88237 1 26099 26099 2.3027 0 1 1692300 32631 7515 21834 21849 32248 32248 0.16731634581879007 PARRRRPFWPR 11 Unmodified _PARRRRPFWPR_ 0 0 0 REV__ENST00000453401.6_1_14:51288712-51297780:-|nuORF REV__ENST00000453401.6_1_14:51288712-51297780:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 498.9441223144531 3 498.96036 1493.85925 NaN NaN NaN NaN NaN NaN NaN 162.84 1 158.05 157.55 158.55 -4.7898 0 0 0 0.23698 1 32421 32421 0.50596 0 1 + 32632 21828 21835 21850 32249 32249 0.13207678436128845 PARSPNGRPLS 11 Unmodified _PARSPNGRPLS_ 0 0 0 REV__ENSG00000107954|ENST00000369780|NEURL1 REV__ENSG00000107954|ENST00000369780|NEURL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.31787109375 2 576.317628 1150.6207 NaN NaN NaN NaN NaN NaN NaN 169.92 1 169.92 169.42 170.42 0 0 0 0 0.2229 1 34904 34904 12.175 2.0242 1 + 32633 15102 21836 21851 32250 32250 0.051418533433889024 PARSRSYGNDW 11 Unmodified _PARSRSYGNDW_ 0 0 0 REV__ENSG00000149634|ENST00000372519|SPATA25 REV__ENSG00000149634|ENST00000372519|SPATA25 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 328.02435302734375 4 327.907451 1307.6007 -0.46764 -0.00015334 -0.49023 -0.00016075 -0.95787 -0.00031409 327.9074097507008 20.58 0.46361 20.58 20.387 20.851 0 29 12 4 0 0 0 0.96192 1 3389 3389 1.3296 1.2564 1 3897200 + 32634 17017 21837 21852 32251 32251 -0.04079942387238589 PARSRSYGNDW 11 Unmodified _PARSRSYGNDW_ 0 0 0 REV__ENSG00000149634|ENST00000372519|SPATA25 REV__ENSG00000149634|ENST00000372519|SPATA25 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 327.907451 1307.6007 0.32793 0.00010753 -0.87604 -0.00028726 -0.54811 -0.00017973 327.9071714287202 22.269 0.31201 20.795 20.593 20.905 -1.4742 0.1085 -0.00034108 NaN 1.3296 30 8 4 NaN NaN NaN NaN 0 NaN NaN 0 2783900 + 32635 17017 21837 21852 -0.04079942387238589 PARSRSYGNDW 11 Unmodified _PARSRSYGNDW_ 0 0 0 REV__ENSG00000149634|ENST00000372519|SPATA25 REV__ENSG00000149634|ENST00000372519|SPATA25 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 327.907451 1307.6007 -0.13316 -4.3665E-05 -0.45604 -0.00014954 -0.5892 -0.0001932 327.90731273303504 22.137 0.45204 20.683 20.423 20.876 -1.4535 -0.0025599 0.00020982 NaN 1.3296 34 12 4 NaN NaN NaN NaN 0 NaN NaN 0 4134300 + 32636 17017 21837 21852 -0.04079942387238589 PARTDERPYAT 11 Unmodified _PARTDERPYAT_ 0 0 0 REV__ENSG00000206013|ENST00000382614|IFITM5 REV__ENSG00000206013|ENST00000382614|IFITM5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 426.2908020019531 3 426.214198 1275.62076 -0.3718 -0.00015847 -0.13315 -5.675E-05 -0.50495 -0.00021522 426.2138582412636 45.158 0.77263 42.351 41.79 42.563 -2.807 37 21 3 0 0 0 0.96201 1 8142 8142 0.36667 0 1 1131000 + 32637 19608 21838 21853 32252 32252 -0.006021914472739809 PARTLCAQHYC 11 Unmodified _PARTLCAQHYC_ 0 0 0 REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|12|1|sense REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|12|1|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.322509765625 3 421.530475 1261.5696 0.24512 0.00010333 -0.76277 -0.00032153 -0.51765 -0.0002182 421.5301332034243 30.052 0.49448 27.978 27.726 28.22 -2.0743 23 13 2 0 0 0 0.96187 1 5165 5165 0.50596 0 1 1271300 + 32638 23770 21839 21854 32253 32253 -0.05072555017341074 PARTMHDT 8 Unmodified _PARTMHDT_ 0 0 0 ENSG00000109101|ENST00000579795|FOXN1;FOXN1|p.P583Lfs*5|1|0.16|ENSG00000109101|chr17:28537232-28537232|C/-|frameshift_variant ENSG00000109101|ENST00000579795|FOXN1 ENSG00000109101|ENST00000579795|FOXN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.14836 927.42325 -0.41413 -0.00012844 1.4796 0.00045891 1.0655 0.00033046 310.1487905265366 71.704 0.49491 68.455 68.203 68.698 -3.2492 20 13 2 0 0 0 1.0249 1 14009 14009 3.9444 1.2092 1 1019100 32639 2516 21840 21855 32254 32254 -0.04336489190950488 PARTMHDT 8 Unmodified _PARTMHDT_ 0 0 0 ENSG00000109101|ENST00000579795|FOXN1;FOXN1|p.P583Lfs*5|1|0.16|ENSG00000109101|chr17:28537232-28537232|C/-|frameshift_variant ENSG00000109101|ENST00000579795|FOXN1 ENSG00000109101|ENST00000579795|FOXN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1719970703125 3 310.14836 927.42325 -0.3252 -0.00010086 1.4229 0.0004413 1.0977 0.00034044 310.1486865799838 72.069 0.48276 68.531 68.33 68.813 -3.5385 20 13 2 0 0 0 0.76728 1 13678 13678 3.9444 1.2092 1 874250 32640 2516 21840 21855 32255 32255 -0.04336489190950488 PARVLSGP 8 Unmodified _PARVLSGP_ 0 0 0 ENST00000531863.5_1_11:66247493-66247538:+|nuORF ENST00000531863.5_1_11:66247493-66247538:+|nuORF ENST00000531863.5_1_11:66247493-66247538:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 399.2018737792969 2 398.73742 795.460287 -0.27751 -0.00011066 0.31532 0.00012573 0.037806 1.5075E-05 398.7374821947884 48.372 0.56678 45.503 45.163 45.729 -2.869 27 15 2 0 0 0 1.0095 1 9090 9090 5.7604 0 1 1798100 32641 10972 21841 21856 32256 32256 0.05437550417150305 PARVLSGP 8 Unmodified _PARVLSGP_ 0 0 0 ENST00000531863.5_1_11:66247493-66247538:+|nuORF ENST00000531863.5_1_11:66247493-66247538:+|nuORF ENST00000531863.5_1_11:66247493-66247538:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 398.73742 795.460287 0.27873 0.00011114 -0.48627 -0.00019389 -0.20754 -8.2753E-05 398.73719783892517 45.709 0.48515 45.709 45.413 45.898 0 0.16016 -0.00048044 NaN 2.5775 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1925300 32642 10972 21841 21856 0.05437550417150305 PARVLSGP 8 Unmodified _PARVLSGP_ 0 0 0 ENST00000531863.5_1_11:66247493-66247538:+|nuORF ENST00000531863.5_1_11:66247493-66247538:+|nuORF ENST00000531863.5_1_11:66247493-66247538:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 398.73742 795.460287 0.0020946 8.3519E-07 0.010143 4.0442E-06 0.012237 4.8794E-06 398.73735635809055 48.408 0.49075 45.466 45.216 45.707 -2.9421 -0.082864 -8.4564E-05 NaN 2.5775 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2074800 32643 10972 21841 21856 0.05437550417150305 PARVLSGP 8 Unmodified _PARVLSGP_ 0 0 0 ENST00000531863.5_1_11:66247493-66247538:+|nuORF ENST00000531863.5_1_11:66247493-66247538:+|nuORF ENST00000531863.5_1_11:66247493-66247538:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 398.73742 795.460287 -0.63075 -0.00025151 0.59696 0.00023803 -0.033794 -1.3475E-05 398.7375649603501 48.467 0.55959 45.517 45.226 45.785 -2.9499 -0.031492 0.00038341 NaN 2.5775 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1173100 32644 10972 21841 21856 0.05437550417150305 PARWEWLYSIY 11 Unmodified _PARWEWLYSIY_ 0 0 0 nc|ENSG00000165511|Q5T742|ZNF22-AS1 nc|ENSG00000165511|Q5T742|ZNF22-AS1 nc|ENSG00000165511|Q5T742|ZNF22-AS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3742065429688 2 742.372069 1482.72959 NaN NaN NaN NaN NaN NaN NaN 107.3 1 102.98 102.48 103.48 -4.32 0 0 0 0.23594 1 21130 21130 3.5965 2.1146 1 32645 12433 21842 21857 32257 32257 0.007530195230174286 PARWLASL 8 Unmodified _PARWLASL_ 0 0 0 WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81 WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.174072265625 3 305.179989 912.518136 NaN NaN NaN NaN NaN NaN NaN 69.079 1 69.079 68.579 69.579 0 0 0 0 0.21486 1 13367 13367 1.8442 0 1 32646 5839 21843 21858 32258 32258 0.058378123425427475 PARWPRGA 8 Unmodified _PARWPRGA_ 0 0 0 ENST00000265097.8_1_5:175395132-175395264:-|nuORF ENST00000265097.8_1_5:175395132-175395264:-|nuORF ENST00000265097.8_1_5:175395132-175395264:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.1692199707031 3 304.171716 909.493319 -0.79678 -0.00024236 -0.59308 -0.0001804 -1.3899 -0.00042276 304.1714725828184 62.043 0.68043 62.043 61.631 62.312 0 51 19 4 0 0 0 8448 1 11877 11877 0.30703 0 1 7961900 32647 8350 21844 21859 32259 32259 0.03495177259844695 PARWRQLIQWE 11 Unmodified _PARWRQLIQWE_ 0 0 0 ENSG00000129038|ENST00000261921|LOXL1 ENSG00000129038|ENST00000261921|LOXL1 ENSG00000129038|ENST00000261921|LOXL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3908081054688 2 741.90186 1481.78917 NaN NaN NaN NaN NaN NaN NaN 165.85 1 161.06 160.56 161.56 -4.7898 0 0 0 0.2367 1 33253 33253 2.9952 0 1 32648 3552 21845 21860 32260 32260 0.06754335257051025 PASDRWLA 8 Unmodified _PASDRWLA_ 0 0 0 nc|ENSG00000197891|Q96S37-2|SLC22A12 nc|ENSG00000197891|Q96S37-2|SLC22A12 nc|ENSG00000197891|Q96S37-2|SLC22A12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2391357421875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 73.365 1 69.778 69.278 70.278 -3.5863 0 0 0 0.20568 1 13924 13924 20.871 2.7362 1 32649 12545 21846 21861 32261 32261 0.00036345066166632023 PASELVTAQ 9 Unmodified _PASELVTAQ_ 0 0 0 REV__CELSR2|p.V518A|1|0.1|ENSG00000143126|chr1:109251632-109251632|T/C|missense_variant REV__CELSR2|p.V518A|1|0.1|ENSG00000143126|chr1:109251632-109251632|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2473449707031 2 458.242732 914.470912 0.39995 0.00018327 -0.16307 -7.4724E-05 0.23688 0.00010855 458.2425625848969 30.309 1.1888 28.192 27.494 28.683 -2.1167 121 33 5 0 0 0 0.54354 1 5445 5445 16.942 1.0951 1 65458000 + 32650 13366 21847 21862 32262 32262 0.010254882809022092 PASELVTAQ 9 Unmodified _PASELVTAQ_ 0 0 0 REV__CELSR2|p.V518A|1|0.1|ENSG00000143126|chr1:109251632-109251632|T/C|missense_variant REV__CELSR2|p.V518A|1|0.1|ENSG00000143126|chr1:109251632-109251632|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23046875 2 458.242732 914.470912 0.54107 0.00024794 -0.16533 -7.5762E-05 0.37574 0.00017218 458.2426248242289 30.327 1.7832 28.252 27.556 29.339 -2.0743 150 50 5 0 0 0 0.54354 1 5191 5191 16.942 1.0951 1 61841000 + 32651 13366 21847 21862 32263 32263 0.010254882809022092 PASGRSSF 8 Unmodified _PASGRSSF_ 0 0 0 ENST00000550560.1_1_19:58512579-58514018:-|nuORF ENST00000550560.1_1_19:58512579-58514018:-|nuORF ENST00000550560.1_1_19:58512579-58514018:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.30023193359375 2 404.701035 807.387516 0.11293 4.5704E-05 -0.17307 -7.0042E-05 -0.060137 -2.4338E-05 404.7009532917723 31.534 0.52671 29.304 29.059 29.586 -2.2305 22 14 2 0 0 0 1.0095 1 5773 5773 5.7604 0 1 1292500 32652 11173 21848 21863 32264 32264 -0.02388203376290221 PASIQVAL 8 Unmodified _PASIQVAL_ 0 0 0 ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2 ENSG00000131462|ENST00000251413|TUBG1 ENSG00000131462|ENST00000251413|TUBG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 400.07562255859375 2 399.739628 797.464704 0.060545 2.4202E-05 -0.29427 -0.00011763 -0.23373 -9.343E-05 399.73949675308086 109.36 0.48692 109.36 109.16 109.65 0 19 13 2 0 0 0 1.0095 1 21537 21537 2.5775 0 1 1021700 32653 1175 21849 21864 32265 32265 0.057870148400297694 PASKPRRLKV 10 Unmodified _PASKPRRLKV_ 0 0 0 ENST00000460191.1_1_1:94344628-94344730:-|nuORF ENST00000460191.1_1_1:94344628-94344730:-|nuORF ENST00000460191.1_1_1:94344628-94344730:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3382568359375 2 576.372207 1150.72986 NaN NaN NaN NaN NaN NaN NaN 170.84 1 166.05 165.55 166.55 -4.7898 0 0 0 0.22588 1 34696 34696 2.9952 0.26005 1 32654 10053 21850 21865 32266 32266 0.1605248403348014 PASKVHNY 8 Unmodified _PASKVHNY_ 0 0 0 nc|ENSG00000183242|Q06250|WT1-AS;ENST00000395900.1_1_11:32460427-32460703:+|nuORF nc|ENSG00000183242|Q06250|WT1-AS nc|ENSG00000183242|Q06250|WT1-AS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2381896972656 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 73.577 1 69.901 69.401 70.401 -3.6764 0 0 0 0.2074 1 13904 13904 19.439 1.304 1 32655 9438 21851 21866 32267 32267 0.00036345066178000707 PASLLLLLLL 10 Unmodified _PASLLLLLLL_ 0 0 0 nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;BTN2A2|p.I493Sfs*20|1|0.29|ENSG00000124508|chr6:26392868-26392868|C/-|frameshift_variant;ENSG00000124508|ENST00000356709|BTN2A2;BTN2A2|p.C169Wfs*16|1|0.3|ENSG00000124508|chr6:26388076-26388086|GCATATCTGGA/-|frameshift_variant;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000124508|Q8WVV5-2|BTN2A2 nc|ENSG00000124508|Q8WVV5-5|BTN2A2 nc|ENSG00000124508|Q8WVV5-5|BTN2A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2705688476562 2 533.367736 1064.72092 NaN NaN NaN NaN NaN NaN NaN 163.07 1 163.07 162.57 163.57 0 0 0 0 0.22588 1 32836 32836 3.9444 0 1 32656 346 21852 21867 32268 32268 0.19114697624468135 PASLLRQHS 9 Unmodified _PASLLRQHS_ 0 0 0 REV__ENST00000410062.8_1_2:181922493-181925485:+|nuORF REV__ENST00000410062.8_1_2:181922493-181925485:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 504.76312255859375 2 504.78289 1007.55123 NaN NaN NaN NaN NaN NaN NaN 143.7 1 138.67 138.17 139.17 -5.0261 0 0 0 0.23508 1 27705 27705 7.2892 0.56607 1 + 32657 21422 21853 21868 32269 32269 0.047753943946077015 PASPLFASTA 10 Unmodified _PASPLFASTA_ 0 0 0 REV__ENST00000395103.2_1_8:144806522-144808011:-|nuORF REV__ENST00000395103.2_1_8:144806522-144808011:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25189208984375 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 165.42 1 160.63 160.13 161.13 -4.7898 0 0 0 0.22576 1 33130 33130 14.838 0.93222 1 + 32658 21257 21854 21869 32270 32270 0.009820786605587273 PASPPVPA 8 Unmodified _PASPPVPA_ 0 0 0 REV__BCORL1|p.I1392Sfs*58|1|0.14|ENSG00000085185|chrX:130028726-130028726|G/-|frameshift_variant REV__BCORL1|p.I1392Sfs*58|1|0.14|ENSG00000085185|chrX:130028726-130028726|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 368.27215576171875 2 368.205421 734.39629 NaN NaN NaN NaN NaN NaN NaN 156.07 1 151.29 150.79 151.79 -4.7791 0 0 0 0.21486 1 31031 31031 6.3541 0 1 + 32659 13189 21855 21870 32271 32271 0.018467702601810743 PASSPADSPRP 11 Unmodified _PASSPADSPRP_ 0 0 0 ENSG00000122367|ENST00000361373|LDB3 ENSG00000122367|ENST00000361373|LDB3 ENSG00000122367|ENST00000361373|LDB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2693481445312 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 48.413 1 48.413 47.913 48.913 0 0 0 0 0.21129 1 9142 9142 16.149 3.1066 1 32660 3219 21856 21871 32272 32272 -0.017052234301445424 PASVEPTPEAP 11 Unmodified _PASVEPTPEAP_ 0 0 0 ENST00000590639.1_1_17:42152067-42152649:+|nuORF ENST00000590639.1_1_17:42152067-42152649:+|nuORF ENST00000590639.1_1_17:42152067-42152649:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7716674804688 2 547.771854 1093.52915 0.21851 0.00011969 -1.29 -0.00070665 -1.0715 -0.00058695 547.7719268629652 164.96 0.31927 159.98 159.79 160.11 -4.9834 10 8 2 0 0 0 0.7348 1 32242 32242 9.3831 0 1 6260700 32661 11605 21857 21872 32273 32273 -0.013868748644881634 PASVEPTPEAP 11 Unmodified _PASVEPTPEAP_ 0 0 0 ENST00000590639.1_1_17:42152067-42152649:+|nuORF ENST00000590639.1_1_17:42152067-42152649:+|nuORF ENST00000590639.1_1_17:42152067-42152649:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7692260742188 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 165.79 1 160.81 160.31 161.31 -4.9811 0 0 0 0.23264 1 32438 32438 6.2058 0 1 32662 11605 21857 21872 32274 32274 -0.013868748644881634 PASWNPETY 9 Unmodified _PASWNPETY_ 0 0 0 ENST00000472623.1_1_X:69645679-69647005:+|nuORF ENST00000472623.1_1_X:69645679-69647005:+|nuORF ENST00000472623.1_1_X:69645679-69647005:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2704467773438 2 532.737814 1063.46108 0.084858 4.5207E-05 0.47781 0.00025455 0.56267 0.00029975 532.7379835528031 122.57 0.62311 122.57 122.3 122.93 0 23 17 2 0 0 0 0.69192 1 24150 24150 20.454 0 1 2298200 32663 10227 21858 21873 32275 32275 -0.0681169972447151 PATAHPSLL 9 Unmodified _PATAHPSLL_ 0 0 0 ENSG00000162722|ENST00000366481|TRIM58 ENSG00000162722|ENST00000366481|TRIM58 ENSG00000162722|ENST00000366481|TRIM58 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75579833984375 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 161.67 1 161.67 161.17 162.17 0 0 0 0 0.21848 1 32474 32474 18.135 3.5533 1 32664 5358 21859 21874 32276 32276 0.04053802243049631 PATDRSATP 9 Unmodified _PATDRSATP_ 0 0 0 CAMKV|p.A429G|1|0.34|ENSG00000164076|chr3:49859538-49859538|G/C|missense_variant;ENST00000475665.5_1_3:49896753-49898557:-|nuORF;nc|ENSG00000164076|Q8NCB2-3|CAMKV;nc|ENSG00000164076|Q8NCB2-2|CAMKV;ENSG00000164076|ENST00000477224|CAMKV CAMKV|p.A429G|1|0.34|ENSG00000164076|chr3:49859538-49859538|G/C|missense_variant CAMKV|p.A429G|1|0.34|ENSG00000164076|chr3:49859538-49859538|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23028564453125 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 20.837 1 19.363 18.863 19.863 -1.4742 0 0 0 0.10202 1 3499 3499 37.974 3.8716 1 32665 372 21860 21875 32277 32277 -0.0148856652166387 PATERVAGML 10 Unmodified _PATERVAGML_ 0 0 0 REV__ENST00000222374.2_1_19:44126724-44127456:-|nuORF REV__ENST00000222374.2_1_19:44126724-44127456:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2623291015625 2 522.778959 1043.54336 0.15131 7.91E-05 -0.43306 -0.00022639 -0.28175 -0.00014729 522.7788130490112 92.234 0.57999 88.426 88.106 88.686 -3.8083 26 16 3 0 0 0 0.78938 1 17684 17684 21.537 3.3906 1 1621700 + 32666 20035 21861 21876 32278 32278 0.023334990828288937 PATHPQRDWR 10 Unmodified _PATHPQRDWR_ 0 0 0 PLG|p.S144Qfs*86|1|0.33|ENSG00000122194|chr6:160713004-160713004|C/-|frameshift_variant PLG|p.S144Qfs*86|1|0.33|ENSG00000122194|chr6:160713004-160713004|C/-|frameshift_variant PLG|p.S144Qfs*86|1|0.33|ENSG00000122194|chr6:160713004-160713004|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.3226318359375 3 421.882894 1262.62685 -0.54248 -0.00022886 -0.37379 -0.0001577 -0.91627 -0.00038656 421.88275061301374 37.331 1.0022 34.862 34.331 35.333 -2.4688 45 28 2 0 0 0 0.91149 1 6961 6961 0.62683 0 1 915710 32667 12803 21862 21877 32279 32279 0.006043715748774048 PATITYIK 8 Unmodified _PATITYIK_ 0 0 0 ENSG00000132357|ENST00000254691|CARD6 ENSG00000132357|ENST00000254691|CARD6 ENSG00000132357|ENST00000254691|CARD6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7693786621094 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 161.39 1 161.39 160.89 161.89 0 0 0 0 0.21323 1 32417 32417 14.582 4.3983 1 32668 3720 21863 21878 32280 32280 0.0656785704561571 PATRLVFSW 9 Unmodified _PATRLVFSW_ 0 0 0 REV__ENST00000421990.6_3_17:41131402-41131642:-|nuORF REV__ENST00000421990.6_3_17:41131402-41131642:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 538.799072265625 2 538.798009 1075.58147 NaN NaN NaN NaN NaN NaN NaN 174.69 1 169.9 169.4 170.4 -4.7898 0 0 0 0.23508 1 35695 35695 7.2892 2.96 1 + 32669 21516 21864 21879 32281 32281 0.046697530598066805 PATSNPKL 8 Unmodified _PATSNPKL_ 0 0 0 REV__ENST00000341567.8_1_7:66418291-66420567:+|nuORF REV__ENST00000341567.8_1_7:66418291-66420567:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.269287109375 2 414.23471 826.454868 0.34287 0.00014203 -0.179 -7.4147E-05 0.16387 6.7883E-05 414.23460139578714 30.135 0.62843 28.018 27.771 28.399 -2.1167 27 17 2 0 0 0 0.97994 1 5389 5389 5.7604 0 1 2084300 + 32670 20715 21865 21880 32282 32282 0.03469826834657397 PATSNPKL 8 Unmodified _PATSNPKL_ 0 0 0 REV__ENST00000341567.8_1_7:66418291-66420567:+|nuORF REV__ENST00000341567.8_1_7:66418291-66420567:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 414.23471 826.454868 0.08903 3.6879E-05 -0.14914 -6.1779E-05 -0.060111 -2.49E-05 414.23460122078683 28.399 0.48829 28.399 28.147 28.635 0 0.23145 -1.8669E-05 NaN 5.7604 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1452500 + 32671 20715 21865 21880 0.03469826834657397 PATSNPKL 8 Unmodified _PATSNPKL_ 0 0 0 REV__ENST00000341567.8_1_7:66418291-66420567:+|nuORF REV__ENST00000341567.8_1_7:66418291-66420567:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 414.23471 826.454868 0.31593 0.00013087 -0.1873 -7.7587E-05 0.12863 5.3282E-05 414.234546626873 30.035 0.52547 28.142 27.856 28.381 -1.8928 -0.025748 -5.0285E-05 NaN 5.7604 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1602900 + 32672 20715 21865 21880 0.03469826834657397 PATSNPKL 8 Unmodified _PATSNPKL_ 0 0 0 REV__ENST00000341567.8_1_7:66418291-66420567:+|nuORF REV__ENST00000341567.8_1_7:66418291-66420567:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 414.23471 826.454868 0.17139 7.0996E-05 0.050649 2.0981E-05 0.22204 9.1976E-05 414.23459150542766 30.185 0.56271 28.111 27.831 28.394 -2.0743 -0.056532 0.00014685 NaN 5.7604 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1166000 + 32673 20715 21865 21880 0.03469826834657397 PATSSCESVLT 11 Unmodified _PATSSCESVLT_ 0 0 0 STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant;nc|ENSG00000130052|Q92502|STARD8;STARD8|p.L976Afs*8|1|0.27|ENSG00000130052|chrX:68724090-68724091|-/G|frameshift_variant;ENSG00000130052|ENST00000374599|STARD8 STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.76806640625 2 547.755346 1093.49614 0.14428 7.9028E-05 0.13776 7.5458E-05 0.28203 0.00015449 547.7558238351736 46.827 0.54869 43.986 43.764 44.313 -2.8409 28 15 4 0 0 0 0.74417 1 8798 8798 8.7454 1.4562 1 1785400 32674 3582 21866 21881 32283 32283 -0.04686824978830373 PATVDMKPGK 10 Unmodified _PATVDMKPGK_ 0 0 0 REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2805786132812 2 522.281334 1042.54812 NaN NaN NaN NaN NaN NaN NaN 169.69 1 164.9 164.4 165.4 -4.7898 0 0 0 0.22588 1 34384 34384 13.042 0 1 + 32675 12988 21867 21882 32284 32284 0.02854383225599122 PAVFFRLL 8 Unmodified _PAVFFRLL_ 0 0 0 REV__CON__P02662 REV__CON__P02662 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23736572265625 2 481.794738 961.574923 -0.13673 -6.5876E-05 1.1362 0.00054743 0.9995 0.00048155 481.7953432158309 51.819 0.65517 48.767 48.417 49.072 -3.0517 37 18 3 0 0 0 1.0035 1 9586 9586 6.3541 0 1 1994000 + + 32676 13517 21868 21883 32285 32285 0.09259859899088951 PAVHGGSW 8 Unmodified _PAVHGGSW_ 0 0 0 REV__ACTL6B|p.G51Rfs*61|1|0.32|ENSG00000077080|chr7:100655539-100655540|-/C|frameshift_variant REV__ACTL6B|p.G51Rfs*61|1|0.32|ENSG00000077080|chr7:100655539-100655540|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.82513427734375 2 405.698295 809.382037 NaN NaN NaN NaN NaN NaN NaN 56.372 1 53.477 52.977 53.977 -2.8944 0 0 0 0.22676 1 10799 10799 0.62683 0 1 + 32677 12925 21869 21884 32286 32286 -0.030278821681008594 PAVKKRRKS 9 Unmodified _PAVKKRRKS_ 0 0 0 REV__ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant REV__ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.0725402832031 3 357.236608 1068.688 -0.7346 -0.00026243 0.78686 0.00028109 0.052256 1.8668E-05 357.23688216001256 53.037 0.82091 49.942 49.518 50.339 -3.0954 55 23 3 0 0 0 0.884 1 9732 9732 0.26902 0 1 6088600 + 32678 19182 21870 21885 32287 32287 0.1563992834499004 PAVLRWFAER 10 Unmodified _PAVLRWFAER_ 0 0 0 nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2 nc|ENSG00000024422|Q9NZN4-2|EHD2 nc|ENSG00000024422|Q9NZN4-2|EHD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7528686523438 2 622.848564 1243.68258 0.5428 0.00033808 -1.7567 -0.0010941 -1.2139 -0.00075605 623.3496747166962 148.96 0.18196 143.9 143.81 143.99 -5.0595 6 4 2 0 0 0 0.871 1 28864 28864 10.074 3.8681 1 3624500 32679 1136 21871 21886 32288 32288 0.07048204762486421 PAVLVLKKII 10 Unmodified _PAVLVLKKII_ 0 0 0 ENST00000262365.8_1_8:12283167-12283239:-|nuORF ENST00000262365.8_1_8:12283167-12283239:-|nuORF ENST00000262365.8_1_8:12283167-12283239:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7857055664062 2 547.389003 1092.76345 0.33174 0.00018159 -3.9443 -0.0021591 -3.6126 -0.0019775 547.8887908921793 141.98 0.17087 141.98 141.88 142.05 0 6 4 2 0 0 0 0.91149 1 28296 28296 0.45834 0 1 2887000 32680 8312 21872 21887 32289 32289 0.22078092752690281 PAVPPAAP 8 Unmodified _PAVPPAAP_ 0 0 0 REV__RTN4|p.R854Sfs*2|1|0.05|ENSG00000115310|chr2:55025537-55025538|-/AA|frameshift_variant REV__RTN4|p.R854Sfs*2|1|0.05|ENSG00000115310|chr2:55025537-55025538|-/AA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2076110839844 2 360.207964 718.401375 NaN NaN NaN NaN NaN NaN NaN 73.958 1 70.282 69.782 70.782 -3.6764 0 0 0 0.23664 1 13986 13986 3.2813 0 1 + 32681 15421 21873 21888 32290 32290 0.030910741227899052 PAVPPGPCLPP 11 Unmodified _PAVPPGPCLPP_ 0 0 0 nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2593383789062 2 522.78097 1043.54739 -0.93053 -0.00048646 -3.0889 -0.0016148 -4.0194 -0.0021013 522.7797047339714 19.792 0.58703 18.467 18.214 18.801 -1.3251 33 16 3 0 0 0 0.8485 1 3041 3041 6.7232 0 1 3071800 32682 2133 21874 21889 32291 32291 0.027355885765246057 PAVPSEQTS 9 Unmodified _PAVPSEQTS_ 0 0 0 ENST00000452079.5_2_1:3659748-3662767:-|nuORF;ENST00000418088.5_2_1:3659748-3662908:-|nuORF ENST00000452079.5_2_1:3659748-3662767:-|nuORF ENST00000452079.5_2_1:3659748-3662767:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2240295410156 2 458.224539 914.434526 -0.1941 -8.8942E-05 -0.63213 -0.00028966 -0.82623 -0.0003786 458.2241915209431 48.902 1.8648 46.03 44.873 46.738 -2.872 108 52 4 0 0 0 0.55979 1 9047 9047 15.847 4.2069 1 40719000 32683 9638 21875 21890 32292 32292 -0.026113886158100286 PAVSRVYQR 9 Unmodified _PAVSRVYQR_ 0 0 0 REV__GDPD4|p.N396Tfs*5|2|0.24|ENSG00000178795|chr11:77243748-77243748|T/-|frameshift_variant REV__GDPD4|p.N396Tfs*5|2|0.24|ENSG00000178795|chr11:77243748-77243748|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 538.3026733398438 2 538.30399 1074.59343 NaN NaN NaN NaN NaN NaN NaN 167.32 1 162.37 161.87 162.87 -4.948 0 0 0 0.23508 1 32902 32902 7.2892 2.5332 1 + 32684 18621 21876 21891 32293 32293 0.05911369802970512 PAVTAATTNT 10 Unmodified _PAVTAATTNT_ 0 0 0 REV__nc|ENSG00000138347|Q86TC9-2|MYPN REV__nc|ENSG00000138347|Q86TC9-2|MYPN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1656494140625 3 316.166185 945.476725 NaN NaN NaN NaN NaN NaN NaN 57.79 1 54.538 54.038 55.038 -3.2517 0 0 0 0.22588 1 10733 10733 0.77653 0.27058 1 + 32685 24060 21877 21892 32294 32294 0.001805867925554594 PAVTPHSPYL 10 Unmodified _PAVTPHSPYL_ 0 0 0 REV__ENSG00000165591|ENST00000374900|FAAH2 REV__ENSG00000165591|ENST00000374900|FAAH2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2664794921875 2 541.287474 1080.5604 0.1922 0.00010403 0.61274 0.00033167 0.80494 0.0004357 541.7893912990124 150.04 0.62292 144.84 144.5 145.13 -5.1994 28 17 2 0 0 0 0.66352 1 29074 29074 25.399 0 1 4690500 + 32686 17783 21878 21893 32295 32295 0.023337429602634074 PAVTPHSPYL 10 Unmodified _PAVTPHSPYL_ 0 0 0 REV__ENSG00000165591|ENST00000374900|FAAH2 REV__ENSG00000165591|ENST00000374900|FAAH2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.266845703125 2 541.287474 1080.5604 0.43332 0.00023455 0.094831 5.1331E-05 0.52816 0.00028588 541.2873005840137 149.78 0.78986 144.65 144.32 145.11 -5.1204 30 21 2 0 0 0 0.48338 1 29016 29016 25.399 0 1 3657900 + 32687 17783 21878 21893 32296 32296 0.023337429602634074 PAVTPPPG 8 Unmodified _PAVTPPPG_ 0 0 0 REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 368.17047119140625 2 368.205421 734.39629 NaN NaN NaN NaN NaN NaN NaN 65.534 1 62.076 61.576 62.576 -3.4581 0 0 0 0.23664 1 12266 12266 3.2813 0 1 + 32688 17908 21879 21894 32297 32297 0.01846770260192443 PAVVSFRM 8 Unmodified _PAVVSFRM_ 0 0 0 REV__ENST00000564747.1_1_16:27472673-27473321:-|nuORF REV__ENST00000564747.1_1_16:27472673-27473321:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7565002441406 2 453.746931 905.479308 NaN NaN NaN NaN NaN NaN NaN 160.84 1 156.05 155.55 156.55 -4.7952 0 0 0 0.22834 1 31985 31985 0.68139 0 1 + 32689 23097 21880 21895 32298 32298 0.022787637165492924 PAVYVIKFEN 10 Unmodified _PAVYVIKFEN_ 0 0 0 REV__ENSG00000112249|ENST00000369162|ASCC3 REV__ENSG00000112249|ENST00000369162|ASCC3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2484130859375 2 590.324057 1178.63356 NaN NaN NaN NaN NaN NaN NaN 161.41 1 161.41 160.91 161.91 0 0 0 0 0.22552 1 32422 32422 18.146 1.0335 1 + 32690 15289 21881 21896 32299 32299 0.05138871682879653 PAWCCCCCC 9 Unmodified _PAWCCCCCC_ 0 0 0 REV__ENSG00000130054|ENST00000252338|NALF2 REV__ENSG00000130054|ENST00000252338|NALF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 496.1573791503906 2 496.124708 990.234862 NaN NaN NaN NaN NaN NaN NaN 141.24 1 136.37 135.87 136.87 -4.8678 0 0 0 0.19635 1 27254 27254 0 0 1 + 32691 15983 21882 21897 32300 32300 -0.26064589018744755 PAWDSHPGI 9 Unmodified _PAWDSHPGI_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2559509277344 2 490.235242 978.45593 NaN NaN NaN NaN NaN NaN NaN 136.91 1 132.07 131.57 132.57 -4.84 0 0 0 0.23048 1 26371 26371 14.582 2.9414 1 32692 9017 21883 21898 32301 32301 -0.034159587964154525 PAWIICWQY 9 Unmodified _PAWIICWQY_ 0 0 0 ENST00000393405.6_2_17:46185143-46189419:+|nuORF ENST00000393405.6_2_17:46185143-46189419:+|nuORF ENST00000393405.6_2_17:46185143-46189419:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.252685546875 2 590.28642 1178.55829 0.38501 0.00022727 -2.0685 -0.001221 -1.6835 -0.00099377 590.2843510978654 74.612 0.49894 71.248 71.022 71.521 -3.3643 14 13 2 0 0 0 0.52414 1 14534 14534 18.135 3.7296 1 1123000 32693 9393 21884 21899 32302 32302 -0.02385009049180553 PAWKEMIYWFL 11 Unmodified _PAWKEMIYWFL_ 0 0 0 REV__ENSG00000171495|ENST00000399564|MROH2B REV__ENSG00000171495|ENST00000399564|MROH2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3788452148438 2 742.375766 1482.73698 NaN NaN NaN NaN NaN NaN NaN 123.48 1 118.75 118.25 119.25 -4.731 0 0 0 0.23698 1 23721 23721 1.3295 0.13619 1 + 32694 18230 21885 21900 32303 32303 0.014920357990376942 PAWLMSET 8 Unmodified _PAWLMSET_ 0 0 0 CHPF2|p.N513Kfs*133|1|0.29|ENSG00000033100|chr7:151237898-151237899|-/A|frameshift_variant;nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2;CHPF2|p.R155Q|1|0.46|ENSG00000033100|chr7:151235248-151235248|G/A|missense_variant CHPF2|p.N513Kfs*133|1|0.29|ENSG00000033100|chr7:151237898-151237899|-/A|frameshift_variant CHPF2|p.N513Kfs*133|1|0.29|ENSG00000033100|chr7:151237898-151237899|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 468.1022644042969 2 467.720578 933.426604 NaN NaN NaN NaN NaN NaN NaN 14.709 1 13.536 13.036 14.036 -1.173 0 0 0 0.21486 1 2009 2009 2.8892 0 1 32695 526 21886 21901 32304 32304 -0.04277239136933986 PAWRRDLLRKK 11 Unmodified _PAWRRDLLRKK_ 0 0 0 ENSG00000187017|ENST00000645284|ESPN;nc|ENSG00000187017|B1AK53-2|ESPN;ENST00000477679.1_1_1:6511829-6520203:+|nuORF ENSG00000187017|ENST00000645284|ESPN ENSG00000187017|ENST00000645284|ESPN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 719.9404907226562 2 719.941319 1437.86809 NaN NaN NaN NaN NaN NaN NaN 56.675 1 53.486 52.986 53.986 -3.1895 0 0 0 0.23698 1 10510 10510 0.35063 0 1 32696 7089 21887 21902 32305 32305 0.1666660728194529 PAWWRRRRVWT 11 Unmodified _PAWWRRRRVWT_ 0 0 0 ENST00000471600.6_1_1:21924475-21926051:-|nuORF;ENST00000542643.6_1_1:21923469-21929393:-|nuORF;ENST00000374763.6_2_1:21923469-21929399:-|nuORF ENST00000471600.6_1_1:21924475-21926051:-|nuORF ENST00000471600.6_1_1:21924475-21926051:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3954467773438 2 785.436735 1568.85892 NaN NaN NaN NaN NaN NaN NaN 136.45 1 131.56 131.06 132.06 -4.8951 0 0 0 0.23698 1 26222 26222 1.4819 0.51963 1 32697 9228 21888 21903 32306 32306 0.09724258716255463 PAWWRRRRVWT 11 Unmodified _PAWWRRRRVWT_ 0 0 0 ENST00000471600.6_1_1:21924475-21926051:-|nuORF;ENST00000542643.6_1_1:21923469-21929393:-|nuORF;ENST00000374763.6_2_1:21923469-21929399:-|nuORF ENST00000471600.6_1_1:21924475-21926051:-|nuORF ENST00000471600.6_1_1:21924475-21926051:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.391357421875 2 785.436735 1568.85892 NaN NaN NaN NaN NaN NaN NaN 147.69 1 142.54 142.04 143.04 -5.1557 0 0 0 0.23698 1 28583 28583 1.4819 0.28856 1 32698 9228 21888 21903 32307 32307 0.09724258716255463 PAWWRRRRVWT 11 Unmodified _PAWWRRRRVWT_ 0 0 0 ENST00000471600.6_1_1:21924475-21926051:-|nuORF;ENST00000542643.6_1_1:21923469-21929393:-|nuORF;ENST00000374763.6_2_1:21923469-21929399:-|nuORF ENST00000471600.6_1_1:21924475-21926051:-|nuORF ENST00000471600.6_1_1:21924475-21926051:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.402099609375 2 785.436735 1568.85892 NaN NaN NaN NaN NaN NaN NaN 147.27 1 142.27 141.77 142.77 -5 0 0 0 0.23698 1 28505 28505 1.4819 0.28856 1 32699 9228 21888 21903 32308 32308 0.09724258716255463 PAYFAPAGY 9 Unmodified _PAYFAPAGY_ 0 0 0 REV__ENSG00000235608|ENST00000422806|NKX1-1 REV__ENSG00000235608|ENST00000422806|NKX1-1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7278137207031 2 478.729261 955.443968 NaN NaN NaN NaN NaN NaN NaN 127.76 1 123.14 122.64 123.64 -4.6172 0 0 0 0.23508 1 25193 25193 9.3474 3.587 1 + 32700 19764 21889 21904 32309 32309 -0.03553575539626763 PAYFTGLST 9 Unmodified _PAYFTGLST_ 0 0 0 REV__nc|ENSG00000143951|O95876-3|WDPCP REV__nc|ENSG00000143951|O95876-3|WDPCP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7411193847656 2 478.739825 955.465098 NaN NaN NaN NaN NaN NaN NaN 162.96 1 157.77 157.27 158.27 -5.1878 0 0 0 0.23411 1 31676 31676 13.508 0 1 + 32701 16759 21890 21905 32310 32310 -0.01441610230756396 PAYIYEICCW 10 Unmodified _PAYIYEICCW_ 0 0 0 ENSG00000146385|ENST00000275200|TAAR8 ENSG00000146385|ENST00000275200|TAAR8 ENSG00000146385|ENST00000275200|TAAR8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7525634765625 2 630.775028 1259.5355 NaN NaN NaN NaN NaN NaN NaN 146.8 1 142.12 141.62 142.62 -4.6868 0 0 0 0.22588 1 29119 29119 4.3292 0.38484 1 32702 4650 21891 21906 32311 32311 -0.08388396228951933 PAYQWMDGYE 10 Unmodified _PAYQWMDGYE_ 0 0 0 ALOX12B|p.L451Sfs*16|1|0.1|ENSG00000179477|chr17:8076669-8076669|C/-|frameshift_variant;ALOX12B|p.L451Afs*27|2|0.33|ENSG00000179477|chr17:8076668-8076669|-/C|frameshift_variant;ENSG00000179477|ENST00000647874|ALOX12B ALOX12B|p.L451Sfs*16|1|0.1|ENSG00000179477|chr17:8076669-8076669|C/-|frameshift_variant ALOX12B|p.L451Sfs*16|1|0.1|ENSG00000179477|chr17:8076669-8076669|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7549438476562 2 630.255514 1258.49647 0.39864 0.00025125 -3.9572 -0.0024941 -3.5586 -0.0022428 630.755834750761 122.88 0.21294 122.88 122.75 122.96 0 7 5 2 0 0 0 0.75442 1 24225 24225 4.3292 0.73274 1 763630 32703 125 21892 21907 32312 32312 -0.1224340525898242 PAYRFVHFD 9 Unmodified _PAYRFVHFD_ 0 0 0 THBS2|p.R59H|1|0.16|ENSG00000186340|chr6:169248850-169248850|C/T|missense_variant THBS2|p.R59H|1|0.16|ENSG00000186340|chr6:169248850-169248850|C/T|missense_variant THBS2|p.R59H|1|0.16|ENSG00000186340|chr6:169248850-169248850|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3319702148438 2 576.285266 1150.55598 0.72839 0.00041976 -4.1045 -0.0023654 -3.3761 -0.0019456 576.7835627843094 120.37 0.10547 115.72 115.66 115.76 -4.645 4 2 2 0 0 0 0.48181 1 23103 23103 0.12781 0 1 982930 32704 25843 21893 21908 32313 32313 -0.013277214626214118 PAYWVVPP 8 Unmodified _PAYWVVPP_ 0 0 0 REV__ENST00000372722.7_1_20:44037543-44038777:+|nuORF REV__ENST00000372722.7_1_20:44037543-44038777:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.169921875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 27.95 1 27.95 27.45 28.45 0 0 0 0 0.21486 1 4948 4948 1.8442 0 1 + 32705 21032 21894 21909 32314 32314 0.018796052197103563 PAYYSKLS 8 Unmodified _PAYYSKLS_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant;FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 114.48 1 114.48 113.98 114.98 0 0 0 0 0.23584 1 22519 22519 0.12286 0.049601 1 32706 7191 21895 21910 32315 32315 0.003546936318684857 PAYYSKLS 8 Unmodified _PAYYSKLS_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant;FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 117.52 1 113.11 112.61 113.61 -4.4088 0 0 0 0.21486 1 22617 22617 1.6526 0.17072 1 32707 7191 21895 21910 32316 32316 0.003546936318684857 PCACCRPAV 9 Unmodified _PCACCRPAV_ 0 0 0 REV__ENST00000330333.10_1_21:42615402-42617988:+|nuORF REV__ENST00000330333.10_1_21:42615402-42617988:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23291015625 2 460.200976 918.387398 -0.063816 -2.9368E-05 1.2879 0.00059271 1.2241 0.00056334 460.20146086148316 100.8 0.66181 96.641 96.427 97.089 -4.1594 31 18 2 0 0 0 0.48181 1 19847 19847 2.6312 2.6312 1 1790400 + 32708 20606 21896 21911 32317 32317 -0.07505985963803141 PCACCRPAV 9 Unmodified _PCACCRPAV_ 0 0 0 REV__ENST00000330333.10_1_21:42615402-42617988:+|nuORF REV__ENST00000330333.10_1_21:42615402-42617988:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.200976 918.387398 0.20467 9.4191E-05 1.0279 0.00047306 1.2326 0.00056725 460.20131708775244 96.73 0.76423 96.73 96.32 97.084 0 0.040338 3.7751E-07 NaN 2.6312 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1981100 + 32709 20606 21896 21911 -0.07505985963803141 PCACCRPAV 9 Unmodified _PCACCRPAV_ 0 0 0 REV__ENST00000330333.10_1_21:42615402-42617988:+|nuORF REV__ENST00000330333.10_1_21:42615402-42617988:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.200976 918.387398 0.2519 0.00011592 0.9732 0.00044787 1.2251 0.00056379 460.20138918135245 101 0.74715 96.708 96.362 97.11 -4.297 0.017925 -5E-05 NaN 2.6312 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2182900 + 32710 20606 21896 21911 -0.07505985963803141 PCACCRPAV 9 Unmodified _PCACCRPAV_ 0 0 0 REV__ENST00000330333.10_1_21:42615402-42617988:+|nuORF REV__ENST00000330333.10_1_21:42615402-42617988:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 460.200976 918.387398 0.34746 0.0001599 0.83076 0.00038232 1.1782 0.00054222 460.20119925183303 100.67 0.68681 96.68 96.414 97.1 -3.9895 -0.0094877 -0.0001811 NaN 2.6312 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1418500 + 32711 20606 21896 21911 -0.07505985963803141 PCAVSSRPL 9 Unmodified _PCAVSSRPL_ 0 0 0 REV__ENST00000521766.5_1_14:102695648-102699035:-|nuORF REV__ENST00000521766.5_1_14:102695648-102699035:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2474365234375 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 89.118 1 85.368 84.868 85.868 -3.7501 0 0 0 0.12123 1 17063 17063 34.402 12.865 1 + 32712 22655 21897 21912 32318 32318 0.012935583656030758 PCDFRSSF 8 Unmodified _PCDFRSSF_ 0 0 0 IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant;ENSG00000169047|ENST00000305123|IRS1 IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 480.2227783203125 2 479.708002 957.401452 0.50784 0.00024361 0.72296 0.00034681 1.2308 0.00059042 479.70832872057144 118.93 1.135 114.32 113.7 114.84 -4.6106 55 31 2 0 0 0 8448 1 22732 22732 10.074 9.3925 1 2217300 32713 5960 21898 21913 32319 32319 -0.07895293939486692 PCDFRSSF 8 Unmodified _PCDFRSSF_ 0 0 0 IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant;ENSG00000169047|ENST00000305123|IRS1 IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.708002 957.401452 -0.057601 -2.7632E-05 1.2587 0.00060379 1.2011 0.00057616 479.70855385478984 114.06 0.71192 114.06 113.77 114.48 0 -0.16281 0.00032846 NaN 10.074 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2295300 32714 5960 21898 21913 -0.07895293939486692 PCDFRSSF 8 Unmodified _PCDFRSSF_ 0 0 0 IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant;ENSG00000169047|ENST00000305123|IRS1 IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.708002 957.401452 0.28731 0.00013783 0.96069 0.00046085 1.248 0.00059867 479.70843504128095 118.8 1.1895 114.3 113.63 114.82 -4.502 0.075402 4.2573E-05 NaN 10.074 53 33 2 NaN NaN NaN NaN 0 NaN NaN 0 2609200 32715 5960 21898 21913 -0.07895293939486692 PCDFRSSF 8 Unmodified _PCDFRSSF_ 0 0 0 IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant;ENSG00000169047|ENST00000305123|IRS1 IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 479.708002 957.401452 0.39122 0.00018767 0.83413 0.00040014 1.2253 0.00058781 479.7084006801277 118.63 0.95343 114.22 113.68 114.63 -4.4088 -0.0062394 -7.8846E-05 NaN 10.074 39 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1954100 32716 5960 21898 21913 -0.07895293939486692 PCDLIQALG 9 Unmodified _PCDLIQALG_ 0 0 0 REV__ENST00000434063.3_1_7:27139637-27139688:+|nuORF REV__ENST00000434063.3_1_7:27139637-27139688:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2414245605469 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 63.987 1 60.99 60.49 61.49 -2.9975 0 0 0 0.22962 1 12369 12369 14.838 0.93222 1 + 32717 21647 21899 21914 32320 32320 0.0017073627144554848 PCLFFWSF 8 Unmodified _PCLFFWSF_ 0 0 0 ENST00000517448.5_1_5:154210261-154230090:-|nuORF;ENST00000423554.5_1_5:154202945-154230090:-|nuORF;nc|ENSG00000170271|Q96IV6-2|FAXDC2;ENSG00000170271|ENST00000326080|FAXDC2 ENST00000517448.5_1_5:154210261-154230090:-|nuORF ENST00000517448.5_1_5:154210261-154230090:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.679443359375 2 523.743857 1045.47316 -0.22206 -0.0001163 -2.9552 -0.0015478 -3.1773 -0.0016641 523.7422696292524 85.297 0.20824 81.633 81.501 81.709 -3.6641 7 5 2 0 0 0 0.89552 1 16649 16649 19.439 3.2899 1 813330 32718 6054 21900 21915 32321 32321 -0.0477575451498069 PCLFFWSF 8 Unmodified _PCLFFWSF_ 0 0 0 ENST00000517448.5_1_5:154210261-154230090:-|nuORF;ENST00000423554.5_1_5:154202945-154230090:-|nuORF;nc|ENSG00000170271|Q96IV6-2|FAXDC2;ENSG00000170271|ENST00000326080|FAXDC2 ENST00000517448.5_1_5:154210261-154230090:-|nuORF ENST00000517448.5_1_5:154210261-154230090:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6940307617188 2 523.743857 1045.47316 -0.32156 -0.00016841 -1.7276 -0.00090484 -2.0492 -0.0010733 523.7430220619531 85.49 0.34466 81.58 81.393 81.738 -3.9093 18 9 3 0 0 0 0.89552 1 16225 16225 19.439 0 1 1186700 32719 6054 21900 21915 32322 32322 -0.0477575451498069 PCPHTVDCYI 10 Unmodified _PCPHTVDCYI_ 0 0 0 ENSG00000189433|ENST00000339480|GJB4 ENSG00000189433|ENST00000339480|GJB4 ENSG00000189433|ENST00000339480|GJB4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 383.17010498046875 3 383.168544 1146.4838 NaN NaN NaN NaN NaN NaN NaN 28.253 1 26.297 25.797 26.797 -1.9561 0 0 0 2.8426 1 5048 5048 1.9064 0.57684 1 32720 7228 21901 21916 32323 32323 -0.08358139922870578 PCPLSTRST 9 Unmodified _PCPLSTRST_ 0 0 0 REV__nc|ENSG00000105341|Q9NW81-2|DMAC2 REV__nc|ENSG00000105341|Q9NW81-2|DMAC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24371337890625 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 106.49 1 102.4 101.9 102.9 -4.0913 0 0 0 0.19687 1 20478 20478 8.1555 0 1 + 32721 23990 21902 21917 32324 32324 -0.011950493596373235 PCRATASPGRA 11 Unmodified _PCRATASPGRA_ 0 0 0 ENST00000299237.2_1_16:58031894-58032311:-|nuORF ENST00000299237.2_1_16:58031894-58032311:-|nuORF ENST00000299237.2_1_16:58031894-58032311:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7774658203125 2 543.777282 1085.54001 NaN NaN NaN NaN NaN NaN NaN 115.67 1 115.67 115.17 116.17 0 0 0 0 0.1931 1 22767 22767 20.415 4.5674 1 32722 8533 21903 21918 32325 32325 0.0006624902880503214 PCRPCCLH 8 Unmodified _PCRPCCLH_ 0 0 0 REV__nc|ENSG00000101938|Q9BU40-3|CHRDL1 REV__nc|ENSG00000101938|Q9BU40-3|CHRDL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1703796386719 3 310.136521 927.387733 NaN NaN NaN NaN NaN NaN NaN 144.68 1 144.68 144.18 145.18 0 0 0 0 0.21486 1 28913 28913 0.45834 0 1 + 32723 14810 21904 21919 32326 32326 -0.07886566243962534 PCSNPRGLRS 10 Unmodified _PCSNPRGLRS_ 0 0 0 ENST00000591601.5_1_19:2038390-2038696:-|nuORF ENST00000591601.5_1_19:2038390-2038696:-|nuORF ENST00000591601.5_1_19:2038390-2038696:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.794921875 2 543.777282 1085.54001 NaN NaN NaN NaN NaN NaN NaN 149.34 1 144.22 143.72 144.72 -5.1204 0 0 0 0.22588 1 28936 28936 7.1017 1.3413 1 32724 11625 21905 21920 32327 32327 0.0006624902880503214 PCSRPALELT 10 Unmodified _PCSRPALELT_ 0 0 0 CCKBR|p.R299C|1|0.21|ENSG00000110148|chr11:6271094-6271094|C/T|missense_variant CCKBR|p.R299C|1|0.21|ENSG00000110148|chr11:6271094-6271094|C/T|missense_variant CCKBR|p.R299C|1|0.21|ENSG00000110148|chr11:6271094-6271094|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.788818359375 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 123.7 1 123.7 123.2 124.2 0 0 0 0 0.22527 1 24385 24385 21.537 3.3906 1 32725 427 21906 21921 32328 32328 0.0145748173724769 PCSYNESY 8 Unmodified _PCSYNESY_ 0 0 0 REV__tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 REV__tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23931884765625 2 481.68165 961.348747 NaN NaN NaN NaN NaN NaN NaN 140.96 1 136.31 135.81 136.81 -4.6493 0 0 0 0.21486 1 27839 27839 5.7604 0 1 + 32726 25181 21907 21922 32329 32329 -0.13347296792983343 PCTGGGAA 8 Unmodified _PCTGGGAA_ 0 0 0 REV__ENST00000263331.9_1_2:113299748-113300117:+|nuORF REV__ENST00000263331.9_1_2:113299748-113300117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1358947753906 2 317.136682 632.25881 NaN NaN NaN NaN NaN NaN NaN 6.655 1 5.6104 5.1104 6.1104 -1.0446 0 0 0 0.21486 1 479 479 0.79363 0 1 + 32727 20210 21908 21923 32330 32330 -0.0720288161088547 PCVSTVLVEP 10 Unmodified _PCVSTVLVEP_ 0 0 0 ENSG00000118496|ENST00000237281|FBXO30 ENSG00000118496|ENST00000237281|FBXO30 ENSG00000118496|ENST00000237281|FBXO30 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2760009765625 2 522.275718 1042.53688 NaN NaN NaN NaN NaN NaN NaN 167.44 1 162.65 162.15 163.15 -4.7898 0 0 0 0.22583 1 33767 33767 13.906 0 1 32728 3038 21909 21924 32331 32331 0.017315611314415946 PCVVQNFI 8 Unmodified _PCVVQNFI_ 0 0 0 nc|ENSG00000100605|Q13572-2|ITPK1;ENSG00000100605|ENST00000267615|ITPK1 nc|ENSG00000100605|Q13572-2|ITPK1 nc|ENSG00000100605|Q13572-2|ITPK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23931884765625 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 17.231 1 16.015 15.515 16.515 -1.2159 0 0 0 0.2396 1 2752 2752 0.0082765 0 1 32729 1997 21910 21925 32332 32332 0.000830574796395922 PCVWIAAASY 10 Unmodified _PCVWIAAASY_ 0 0 0 ENST00000543152.5_1_16:19590306-19619547:+|nuORF ENST00000543152.5_1_16:19590306-19619547:+|nuORF ENST00000543152.5_1_16:19590306-19619547:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2611694335938 2 540.762778 1079.511 0.40263 0.00021773 -0.81349 -0.00043991 -0.41086 -0.00022218 541.2631961381906 74.346 1.4662 74.346 73.944 75.41 0 94 41 3 0 0 0 0.664 1 14428 14428 14.838 1.3304 1 3902000 32730 11100 21911 21926 32333 32333 -0.025572883201903096 PCWLLSLS 8 Unmodified _PCWLLSLS_ 0 0 0 ENST00000482378.6_2_12:56226965-56228769:+|nuORF ENST00000482378.6_2_12:56226965-56228769:+|nuORF ENST00000482378.6_2_12:56226965-56228769:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2414855957031 2 459.741314 917.468075 -0.3954 -0.00018178 3.2977 0.0015161 2.9023 0.0013343 459.7431528115689 105.8 0.176 101.54 101.41 101.59 -4.2638 6 4 2 0 0 0 8448 1 20832 20832 4.2837 0 1 476700 32731 10393 21912 21927 32334 32334 0.006039416224098204 PDACHFFSY 9 Unmodified _PDACHFFSY_ 0 0 0 REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3 REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78173828125 2 543.72111 1085.42767 0.33515 0.00018223 -1.6309 -0.00088676 -1.2958 -0.00070454 544.2228006999787 151.06 0.13957 146.3 146.25 146.39 -4.7523 5 3 2 0 0 0 0.6215 1 30025 30025 1.2148 0.80657 1 781830 + 32732 14576 21913 21928 32335 32335 -0.11163024768006835 PDAEFAAQAF 10 Unmodified _PDAEFAAQAF_ 0 0 0 REV__ENST00000480952.1_1_1:54298234-54304135:-|nuORF REV__ENST00000480952.1_1_1:54298234-54304135:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2616577148438 2 533.745639 1065.47673 0.13992 7.4681E-05 -0.71055 -0.00037925 -0.57063 -0.00030457 533.7452956777792 23.539 0.28424 23.539 23.372 23.657 0 14 7 2 0 0 0 0.871 1 4038 4038 10.074 2.1638 1 1115400 + 32733 22169 21914 21929 32336 32336 -0.05339413207434518 PDAEFAAQAF 10 Unmodified _PDAEFAAQAF_ 0 0 0 REV__ENST00000480952.1_1_1:54298234-54304135:-|nuORF REV__ENST00000480952.1_1_1:54298234-54304135:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 533.745639 1065.47673 -0.10988 -5.8648E-05 -0.59399 -0.00031704 -0.70387 -0.00037569 533.7454018695643 25.182 0.34895 23.329 23.116 23.465 -1.8534 -0.1053 7.5633E-05 NaN 10.074 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 389540 + 32734 22169 21914 21929 -0.05339413207434518 PDAEYSFPT 9 Unmodified _PDAEYSFPT_ 0 0 0 REV__nc|ENSG00000164050|O43157-2|PLXNB1 REV__nc|ENSG00000164050|O43157-2|PLXNB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.22027587890625 3 342.818674 1025.43419 -0.22996 -7.8836E-05 0.23168 7.9425E-05 0.0017194 5.8944E-07 342.8186375411365 61.889 0.56428 58.928 58.58 59.145 -2.9614 28 15 2 0 0 0 0.8825 1 11968 11968 2.7352 0 1 2322500 + 32735 17641 21915 21930 32337 32337 -0.0775080833566335 PDAIFPPY 8 Unmodified _PDAIFPPY_ 0 0 0 REV__ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant REV__ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2314453125 2 460.231636 918.448719 NaN NaN NaN NaN NaN NaN NaN 88.39 1 84.395 83.895 84.895 -3.9953 0 0 0 0.21486 1 16836 16836 10.183 0.83596 1 + 32736 12887 21916 21931 32338 32338 -0.013766913968652261 PDAPGPGPRSE 11 Unmodified _PDAPGPGPRSE_ 0 0 0 ENSG00000090565|ENST00000262305|RAB11FIP3;nc|ENSG00000090565|O75154-3|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2043151855469 3 360.508722 1078.50434 -0.32434 -0.00011693 -0.36849 -0.00013284 -0.69283 -0.00024977 360.5087598902814 16.341 0.65722 16.341 15.955 16.613 0 25 18 2 0 0 0 0.96165 1 2496 2496 1.1098 0 1 990570 32737 1788 21917 21932 32339 32339 -0.031775099471587964 PDASSLGNL 9 Unmodified _PDASSLGNL_ 0 0 0 REV__MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant REV__MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2193603515625 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 40.445 1 37.811 37.311 38.311 -2.6348 0 0 0 0.23508 1 7536 7536 10.824 0.64053 1 + 32738 23885 21918 21933 32340 32340 -0.01735371270228825 PDATGRLEIL 10 Unmodified _PDATGRLEIL_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7849731445312 2 542.803488 1083.59242 -0.0042015 -2.2806E-06 0.89832 0.00048761 0.89412 0.00048533 542.8041436472234 112.17 0.79674 107.74 107.34 108.14 -4.4231 46 22 3 0 0 0 0.4942 1 22131 22131 24.991 5.734 1 2823400 32739 5615 21919 21934 32341 32341 0.053971106434119065 PDATGRLEIL 10 Unmodified _PDATGRLEIL_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.803488 1083.59242 0.4892 0.00026554 -0.25271 -0.00013717 0.23649 0.00012837 542.8034258155849 108.1 0.58681 108.1 107.76 108.34 0 0.24041 -0.00062485 NaN 24.991 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2141100 32740 5615 21919 21934 0.053971106434119065 PDATGRLEIL 10 Unmodified _PDATGRLEIL_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.803488 1083.59242 -0.010486 -5.692E-06 1.1081 0.00060147 1.0976 0.00059578 542.804241819062 112.3 0.90536 107.78 107.27 108.18 -4.5259 -0.086388 0.00085243 NaN 24.991 39 25 2 NaN NaN NaN NaN 0 NaN NaN 0 2794000 32741 5615 21919 21934 0.053971106434119065 PDATGRLEIL 10 Unmodified _PDATGRLEIL_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.803488 1083.59242 0.68179 0.00037008 -0.04765 -2.5865E-05 0.63414 0.00034421 542.8037092310365 112.06 1.0823 107.83 107.21 108.3 -4.2289 -0.034624 -0.00040224 NaN 24.991 45 30 3 NaN NaN NaN NaN 0 NaN NaN 0 2508100 32742 5615 21919 21934 0.053971106434119065 PDATVIHNI 9 Unmodified _PDATVIHNI_ 0 0 0 nc|ENSG00000198022|A6NJ88|SAGE2P nc|ENSG00000198022|A6NJ88|SAGE2P nc|ENSG00000198022|A6NJ88|SAGE2P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2664794921875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 68.422 1 68.422 67.922 68.922 0 0 0 0 0.19512 1 13229 13229 12.241 2.1667 1 32743 12547 21920 21935 32342 32342 0.023328834091330464 PDAVSPLVLPG 11 Unmodified _PDAVSPLVLPG_ 0 0 0 ENST00000413818.2_1_20:45981938-45982076:+|nuORF ENST00000413818.2_1_20:45981938-45982076:+|nuORF ENST00000413818.2_1_20:45981938-45982076:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.0866394042969 3 355.53773 1063.59136 -0.44903 -0.00015965 0.41086 0.00014608 -0.03817 -1.3571E-05 355.5378948827436 55.782 0.41628 52.898 52.626 53.043 -2.8837 25 11 3 0 0 0 0.96166 1 10647 10647 0.45452 0 1 6349900 32744 9596 21921 21936 32343 32343 0.062108962745242025 PDCCCDVG 8 Unmodified _PDCCCDVG_ 0 0 0 REV__ENSG00000090889|ENST00000374403|KIF4A REV__ENSG00000090889|ENST00000374403|KIF4A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3855590820312 1 811.241922 810.234646 0.69781 0.00056609 2.2317 0.0018104 2.9295 0.0023765 811.2395044308298 172.62 0.13857 167.73 167.65 167.79 -4.881 5 3 2 0 0 0 1.0271 1 34277 34277 0.69038 0 1 8991100 + 32745 14556 21922 21937 32344 32344 -0.1780622615107177 PDCKSDHH 8 Unmodified _PDCKSDHH_ 0 0 0 REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1;REV__GABBR1|p.A575Sfs*2|3|0.31|ENSG00000204681|chr6:29609366-29609367|-/G|frameshift_variant REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.13983154296875 3 313.464348 937.371214 -0.60612 -0.00019 -0.21919 -6.8709E-05 -0.82531 -0.00025871 313.46423345493685 55.5 0.95701 55.5 54.981 55.938 0 54 26 3 0 0 0 1.0265 1 10565 10565 1.6526 0.45928 1 5551500 + 32746 19561;23557 21923 21938 32345 32345 -0.09997652604704399 PDCVEEEEM 9 Unmodified _PDCVEEEEM_ 0 0 0 REV__KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant REV__KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20184326171875 3 360.800185 1079.37873 -0.099759 -3.5993E-05 0.62171 0.00022431 0.52196 0.00018832 360.80032074031226 98.358 0.8728 98.358 97.81 98.683 0 30 24 2 0 0 0 0.88278 1 19260 19260 0 0 1 1269200 + 32747 15912 21924 21939 32346 32346 -0.15778725909945024 PDDDFTVWKG 10 Unmodified _PDDDFTVWKG_ 0 0 0 REV__STON1|p.S183Qfs*39|1|0.22|ENSG00000243244|chr2:48581176-48581176|T/-|frameshift_variant REV__STON1|p.S183Qfs*39|1|0.22|ENSG00000243244|chr2:48581176-48581176|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2708129882812 2 590.269478 1178.5244 NaN NaN NaN NaN NaN NaN NaN 21.639 1 21.639 21.139 22.139 0 0 0 0 0.22588 1 3627 3627 5.7319 0.83484 1 + 32748 14233 21925 21940 32347 32347 -0.05771759007234323 PDDFPEMDE 9 Unmodified _PDDFPEMDE_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ADGRV1|p.S2670Rfs*9|1|0.05|ENSG00000164199|chr5:90697000-90697001|-/GCCCAAAATAATT|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF;ADGRV1|p.F2538V|1|0.12|ENSG00000164199|chr5:90694368-90694368|T/G|missense_variant ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.783203125 2 547.70278 1093.39101 NaN NaN NaN NaN NaN NaN NaN 14.478 1 13.305 12.805 13.805 -1.173 0 0 0 0.1963 1 1961 1961 0.40827 0.39999 1 32749 5525 21926 21941 32348 32348 -0.15195366175248637 PDDGGTAH 8 Unmodified _PDDGGTAH_ 0 0 0 ENSG00000274252|ENST00000619998|GGTLC3;nc|ENSG00000197421|A6NGU5|GGT3P;nc|ENSG00000133475|P36268|GGT2P;nc|ENSG00000133475|P36268-3|GGT2P;nc|ENSG00000100031|P19440-3|GGT1;ENSG00000149435|ENST00000335694|GGTLC1;nc|ENSG00000133475|P36268-2|GGT2P;ENSG00000100031|ENST00000400382|GGT1;GGTLC1|p.S94Hfs*58|1|0.35|ENSG00000149435|chr20:23986101-23986101|G/-|frameshift_variant;GGTLC1|p.G130Afs*22|1|0.4|ENSG00000149435|chr20:23985890-23985890|C/-|frameshift_variant ENSG00000274252|ENST00000619998|GGTLC3 ENSG00000274252|ENST00000619998|GGTLC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 385.2992248535156 2 385.1592 768.303846 NaN NaN NaN NaN NaN NaN NaN 160.87 1 156.08 155.58 156.58 -4.7952 0 0 0 0.21486 1 31992 31992 2.5775 1.7838 1 32750 8016 21927 21942 32349 32349 -0.08957359543990151 PDDLFICTY 9 Unmodified _PDDLFICTY_ 0 0 0 SULT1C2|p.L43F|1|0.2|ENSG00000198203|chr2:108293794-108293794|C/T|missense_variant SULT1C2|p.L43F|1|0.2|ENSG00000198203|chr2:108293794-108293794|C/T|missense_variant SULT1C2|p.L43F|1|0.2|ENSG00000198203|chr2:108293794-108293794|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.772216796875 2 543.74425 1085.47395 0.33563 0.0001825 -1.5988 -0.00086935 -1.2632 -0.00068685 543.7425598487035 136.35 0.45502 136.35 136.13 136.58 0 21 12 2 0 0 0 0.6329 1 27009 27009 10.824 2.0785 1 5210200 32751 25798 21928 21943 32350 32350 -0.06537004656570389 PDDQRLLAH 9 Unmodified _PDDQRLLAH_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.28076171875 2 532.777805 1063.54106 0.052167 2.7794E-05 -3.3839 -0.0018029 -3.3317 -0.0017751 532.7780464852959 115.04 0.1022 110.57 110.5 110.6 -4.4726 4 2 2 0 0 0 0.55979 1 22668 22668 15.847 0 1 462990 32752 5775 21929 21944 32351 32351 0.011827866693920441 PDDVYGKY 8 Unmodified _PDDVYGKY_ 0 0 0 REV__nc|ENSG00000170502|Q9BW91-2|NUDT9 REV__nc|ENSG00000170502|Q9BW91-2|NUDT9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.19061279296875 3 319.483514 955.428712 -0.33657 -0.00010753 0.42987 0.00013734 0.093296 2.9807E-05 319.48396671503673 39.77 0.31963 39.77 39.575 39.895 0 14 8 2 0 0 0 0.88445 1 7371 7371 0.62683 0 1 1941700 + 32753 18167 21930 21945 32352 32352 -0.05078487127468634 PDEAPSPPP 9 Unmodified _PDEAPSPPP_ 0 0 0 REV__ENSG00000283683|ENST00000637642|MYOCOS REV__ENSG00000283683|ENST00000637642|MYOCOS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7483825683594 2 453.713808 905.413062 0.25944 0.00011771 0.060072 2.7256E-05 0.31951 0.00014497 453.71377763673866 32.771 2.2994 32.771 31.945 34.244 0 116 65 3 0 0 0 0.54354 1 6252 6252 16.942 4.4107 1 3250500 + 32754 19961 21931 21946 32353 32353 -0.04342773644521003 PDECPGPG 8 Unmodified _PDECPGPG_ 0 0 0 REV__nc|ENSG00000188747|Q86UR1-3|NOXA1 REV__nc|ENSG00000188747|Q86UR1-3|NOXA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 386.1527099609375 2 386.152529 770.290504 NaN NaN NaN NaN NaN NaN NaN 7.788 1 6.7732 6.2732 7.2732 -1.0148 0 0 0 0.21486 1 669 669 0.79363 0 1 + 32755 19167 21932 21947 32354 32354 -0.1038293364757692 PDEDFTSQGR 10 Unmodified _PDEDFTSQGR_ 0 0 0 nc|ENSG00000169344|P07911-5|UMOD nc|ENSG00000169344|P07911-5|UMOD nc|ENSG00000169344|P07911-5|UMOD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.319580078125 2 576.251817 1150.48908 0.26534 0.0001529 0.23379 0.00013472 0.49913 0.00028763 576.2519776324527 26.623 0.45829 24.988 24.789 25.247 -1.6347 28 12 3 0 0 0 0.64074 1 4442 4442 27.629 1.3607 1 1230600 32756 12453 21933 21948 32355 32355 -0.08014421535040128 PDEDFTSQGR 10 Unmodified _PDEDFTSQGR_ 0 0 0 nc|ENSG00000169344|P07911-5|UMOD nc|ENSG00000169344|P07911-5|UMOD nc|ENSG00000169344|P07911-5|UMOD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33056640625 2 576.251817 1150.48908 0.09674 5.5746E-05 0.16503 9.5098E-05 0.26177 0.00015084 576.2519716957255 26.851 0.55009 24.929 24.675 25.226 -1.9222 28 15 2 0 0 0 0.61964 1 4495 4495 18.146 1.9972 1 1151200 32757 12453 21933 21948 32356 32356 -0.08014421535040128 PDEITLNKI 9 Unmodified _PDEITLNKI_ 0 0 0 REV__RGS7|p.M276Cfs*9|1|0.31|ENSG00000182901|chr1:240814735-240814735|T/-|frameshift_variant REV__RGS7|p.M276Cfs*9|1|0.31|ENSG00000182901|chr1:240814735-240814735|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27783203125 2 521.792589 1041.57063 0.21337 0.00011134 0.22623 0.00011804 0.4396 0.00022938 521.7926826199779 154.84 0.6418 154.84 154.5 155.14 0 28 17 2 0 0 0 0.045725 1 31040 31040 72.968 10.395 1 5446100 + 32758 18808 21934 21949 32357 32357 0.0515030589485832 PDEITLNKI 9 Unmodified _PDEITLNKI_ 0 0 0 REV__RGS7|p.M276Cfs*9|1|0.31|ENSG00000182901|chr1:240814735-240814735|T/-|frameshift_variant REV__RGS7|p.M276Cfs*9|1|0.31|ENSG00000182901|chr1:240814735-240814735|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2568969726562 2 521.792589 1041.57063 -0.056657 -2.9563E-05 -0.32273 -0.0001684 -0.37939 -0.00019796 522.2939416836101 159.59 0.70767 154.8 154.48 155.19 -4.7952 30 19 2 0 0 0 0.11219 1 31787 31787 51.63 11.68 1 3335100 + 32759 18808 21934 21949 32358 32358 0.0515030589485832 PDEITLNKI 9 Unmodified _PDEITLNKI_ 0 0 0 REV__RGS7|p.M276Cfs*9|1|0.31|ENSG00000182901|chr1:240814735-240814735|T/-|frameshift_variant REV__RGS7|p.M276Cfs*9|1|0.31|ENSG00000182901|chr1:240814735-240814735|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26318359375 2 521.792589 1041.57063 -0.54139 -0.00028249 0.63756 0.00033267 0.096167 5.0179E-05 521.7928281582508 160.23 0.56258 155 154.8 155.37 -5.2299 24 15 2 0 0 0 0.053942 1 31098 31098 69.105 15.272 1 2844300 + 32760 18808 21934 21949 32359 32359 0.0515030589485832 PDEIVRRIGP 10 Unmodified _PDEIVRRIGP_ 0 0 0 REV__TRMT5|p.R120H|1|0.41|ENSG00000126814|chr14:60979539-60979539|C/T|missense_variant REV__TRMT5|p.R120H|1|0.41|ENSG00000126814|chr14:60979539-60979539|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3192749023438 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 26.981 1 25.199 24.699 25.699 -1.7821 0 0 0 0.22588 1 4779 4779 10.824 0 1 + 32761 15867 21935 21950 32360 32360 0.07655908145943613 PDELRFNA 8 Unmodified _PDELRFNA_ 0 0 0 UCHL3|p.D216N|1|0.12|ENSG00000118939|chr13:75605765-75605765|G/A|missense_variant;ENST00000607339.1_1_13:76178789-76179945:+|nuORF;ENSG00000118939|ENST00000377595|UCHL3 UCHL3|p.D216N|1|0.12|ENSG00000118939|chr13:75605765-75605765|G/A|missense_variant UCHL3|p.D216N|1|0.12|ENSG00000118939|chr13:75605765-75605765|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2392272949219 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 163.67 1 158.63 158.13 159.13 -5.0446 0 0 0 0.22934 1 31864 31864 0.12286 0 1 32762 3053 21936 21951 32361 32361 -0.015319761420073519 PDEQATIQY 9 Unmodified _PDEQATIQY_ 0 0 0 nc|ENSG00000166535|A8K2U0-2|A2ML1;ENSG00000166535|ENST00000299698|A2ML1 nc|ENSG00000166535|A8K2U0-2|A2ML1 nc|ENSG00000166535|A8K2U0-2|A2ML1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2832641601562 2 532.748379 1063.4822 0.10937 5.8267E-05 -1.2984 -0.00069172 -1.189 -0.00063345 532.747425414065 95.523 0.40645 91.473 91.272 91.678 -4.0496 17 11 2 0 0 0 0.54076 1 18733 18733 34.102 0 1 1376600 32763 5731 21937 21952 32362 32362 -0.046997344155897736 PDERCRRH 8 Unmodified _PDERCRRH_ 0 0 0 REV__ZNF69|p.F129Lfs*8|1|0.32|ENSG00000198429|chr19:11904782-11904782|T/-|frameshift_variant REV__ZNF69|p.F129Lfs*8|1|0.32|ENSG00000198429|chr19:11904782-11904782|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.07379150390625 3 356.842041 1067.50429 0.21556 7.6921E-05 -0.079285 -2.8292E-05 0.13627 4.8629E-05 356.8420049040131 33.798 0.55328 31.651 31.321 31.875 -2.1468 19 15 2 0 0 0 1.0265 1 5867 5867 0.40072 0 1 557000 + 32764 19413 21938 21953 32363 32363 -0.026757884281778388 PDERCRRH 8 Unmodified _PDERCRRH_ 0 0 0 REV__ZNF69|p.F129Lfs*8|1|0.32|ENSG00000198429|chr19:11904782-11904782|T/-|frameshift_variant REV__ZNF69|p.F129Lfs*8|1|0.32|ENSG00000198429|chr19:11904782-11904782|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 356.842041 1067.50429 -0.29809 -0.00010637 -0.045816 -1.6349E-05 -0.34391 -0.00012272 356.84184040954085 33.81 0.38722 31.594 31.492 31.879 -2.2158 -0.028577 1.9531E-05 NaN 0.40072 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 223030 + 32765 19413 21938 21953 -0.026757884281778388 PDERPVRPI 9 Unmodified _PDERPVRPI_ 0 0 0 REV__ENST00000377320.3_1_1:9712717-9713065:-|nuORF REV__ENST00000377320.3_1_1:9712717-9713065:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2054748535156 3 360.204974 1077.59309 0.11953 4.3054E-05 -0.052963 -1.9077E-05 0.066564 2.3977E-05 360.5393053235819 47.14 0.52479 47.14 46.873 47.398 0 23 14 2 0 0 0 0.59677 1 8935 8935 0.029283 0 1 1853500 + 32766 21094 21939 21954 32364 32364 0.057399500831252226 PDESDFLKL 9 Unmodified _PDESDFLKL_ 0 0 0 REV__ENST00000495716.1_1_3:52407964-52408519:+|nuORF REV__ENST00000495716.1_1_3:52407964-52408519:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.276611328125 2 532.268947 1062.52334 0.10367 5.5179E-05 0.24233 0.00012898 0.34599 0.00018416 532.2690177628067 141.27 0.93837 136.62 136.19 137.13 -4.6493 64 26 3 0 0 0 0.6329 1 27991 27991 10.824 0.024421 1 18903000 + 32767 22382 21940 21955 32365 32365 -0.005419733761527823 PDETFHYSSP 10 Unmodified _PDETFHYSSP_ 0 0 0 REV__nc|ENSG00000164308|Q6P179-4|ERAP2 REV__nc|ENSG00000164308|Q6P179-4|ERAP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.249755859375 2 590.251286 1178.48802 NaN NaN NaN NaN NaN NaN NaN 46.13 1 43.289 42.789 43.789 -2.8409 0 0 0 0.22588 1 8702 8702 9.3831 1.473 1 + 32768 17672 21941 21956 32366 32366 -0.0940863590394656 PDEYYPYKYYY 11 Unmodified _PDEYYPYKYYY_ 0 0 0 REV__COL5A1|p.E276K|1|0.48|ENSG00000130635|chr9:134728709-134728709|G/A|missense_variant REV__COL5A1|p.E276K|1|0.48|ENSG00000130635|chr9:134728709-134728709|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2728881835938 3 521.894131 1562.66056 -0.058153 -3.035E-05 3.5753 0.0018659 3.5172 0.0018356 522.2304703621436 159.38 0.10561 154.58 154.52 154.62 -4.7952 4 2 2 0 0 0 0.81822 1 31688 31688 1.2148 1.12 1 1132600 + 32769 13491 21942 21957 32367 32367 -0.09826109287223517 PDFFAFDH 8 Unmodified _PDFFAFDH_ 0 0 0 REV__nc|ENSG00000104517|O95071-2|UBR5 REV__nc|ENSG00000104517|O95071-2|UBR5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.0340270996094 3 332.480104 994.418482 -0.19657 -6.5356E-05 -0.40265 -0.00013387 -0.59922 -0.00019923 332.47996439988816 21.184 0.35528 19.799 19.614 19.969 -1.3847 13 9 2 0 0 0 1.0277 1 3293 3293 0 0 1 958720 + 32770 14924 21943 21958 32368 32368 -0.07895050062052178 PDFKALEAA 9 Unmodified _PDFKALEAA_ 0 0 0 REV__ENST00000437111.1_1_10:52390343-52390514:-|nuORF REV__ENST00000437111.1_1_10:52390343-52390514:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2530517578125 2 481.2531 960.491647 -0.065773 -3.1654E-05 0.43948 0.0002115 0.3737 0.00017985 481.2533288834899 70.197 0.63531 66.948 66.615 67.25 -3.2492 32 17 2 0 0 0 0.38188 1 13703 13703 26.884 0 1 4295500 + 32771 16799 21944 21959 32369 32369 0.009820786605587273 PDFKALEAA 9 Unmodified _PDFKALEAA_ 0 0 0 REV__ENST00000437111.1_1_10:52390343-52390514:-|nuORF REV__ENST00000437111.1_1_10:52390343-52390514:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2532043457031 2 481.2531 960.491647 0.39635 0.00019075 -0.075564 -3.6365E-05 0.32079 0.00015438 481.2530639502723 70.497 0.60397 66.917 66.66 67.264 -3.5798 30 16 2 0 0 0 0.38188 1 13307 13307 26.884 1.4843 1 3549700 + 32772 16799 21944 21959 32370 32370 0.009820786605587273 PDFTTRKTL 9 Unmodified _PDFTTRKTL_ 0 0 0 ENSG00000284484|ENST00000640173|CPHXL2 ENSG00000284484|ENST00000640173|CPHXL2 ENSG00000284484|ENST00000640173|CPHXL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2012939453125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112 1 107.58 107.08 108.08 -4.4231 0 0 0 0.23508 1 22072 22072 5.2969 0 1 32773 8063 21945 21960 32371 32371 0.0461712798901317 PDFTTRKTL 9 Unmodified _PDFTTRKTL_ 0 0 0 ENSG00000284484|ENST00000640173|CPHXL2 ENSG00000284484|ENST00000640173|CPHXL2 ENSG00000284484|ENST00000640173|CPHXL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 111.38 1 107.15 106.65 107.65 -4.2289 0 0 0 0.23508 1 21438 21438 7.1017 1.3183 1 32774 8063 21945 21960 32372 32372 0.0461712798901317 PDGAALAT 8 Unmodified _PDGAALAT_ 0 0 0 nc|ENSG00000120256|Q86VZ4-2|LRP11;ENSG00000120256|ENST00000239367|LRP11 nc|ENSG00000120256|Q86VZ4-2|LRP11 nc|ENSG00000120256|Q86VZ4-2|LRP11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 358.1868591308594 2 358.184686 714.354819 NaN NaN NaN NaN NaN NaN NaN 47.582 1 44.713 44.213 45.213 -2.869 0 0 0 0.21486 1 8992 8992 5.2307 0 1 32775 3124 21946 21961 32373 32373 -0.01378410499137317 PDGAEGKEGP 10 Unmodified _PDGAEGKEGP_ 0 0 0 REV__ENSG00000142156|ENST00000361866|COL6A1 REV__ENSG00000142156|ENST00000361866|COL6A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74163818359375 2 478.719621 955.42469 -0.35648 -0.00017066 0.69782 0.00033406 0.34134 0.0001634 478.71988767417355 35.804 0.81687 33.41 32.952 33.768 -2.3938 52 22 3 0 0 0 0.84217 1 6531 6531 15.248 2.7169 1 3290400 + 32776 13494 21947 21962 32374 32374 -0.054805766211757145 PDGEMEEEF 9 Unmodified _PDGEMEEEF_ 0 0 0 REV__EXTL3|p.Y472Tfs*37|1|0.34|ENSG00000012232|chr8:28717468-28717468|T/-|frameshift_variant REV__EXTL3|p.Y472Tfs*37|1|0.34|ENSG00000012232|chr8:28717468-28717468|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2848510742188 2 541.70278 1081.39101 0.099851 5.409E-05 -0.62024 -0.00033598 -0.52038 -0.00028189 541.7023194416114 38.5 0.42531 36.058 35.983 36.408 -2.4419 16 11 2 0 0 0 0.79204 1 6889 6889 7.2892 1.0834 1 528090 + 32777 13943 21948 21963 32375 32375 -0.14643366175255323 PDGGGGGGG 9 Unmodified _PDGGGGGGG_ 0 0 0 ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D REV__ENSG00000206418|ENST00000649141|RAB12;ENSG00000181588|ENST00000402693|MEX3D;REV__LEF1|p.R296Dfs*8|1|0.29|ENSG00000138795|chr4:108078342-108078342|T/-|frameshift_variant ENSG00000181588|ENST00000402693|MEX3D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7669677734375 1 630.247794 629.240518 0.3924 0.00024731 -1.2173 -0.00076722 -0.82492 -0.00051991 630.2477820410083 96.845 0.70056 96.845 96.491 97.191 0 43 19 4 0 0 0 0.86532 1 19011 19011 2.0598 0 1 3296500 32778 19619;6731;16493 21949 21964 32376 32376 -0.08893300261229342 PDGGGGGGG 9 Unmodified _PDGGGGGGG_ 0 0 0 ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D REV__ENSG00000206418|ENST00000649141|RAB12;ENSG00000181588|ENST00000402693|MEX3D;REV__LEF1|p.R296Dfs*8|1|0.29|ENSG00000138795|chr4:108078342-108078342|T/-|frameshift_variant ENSG00000181588|ENST00000402693|MEX3D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7489013671875 1 630.247794 629.240518 0.96629 0.000609 -1.928 -0.0012151 -0.9617 -0.00060611 630.2476588544478 101.69 0.68735 97.524 97.148 97.835 -4.1699 51 19 4 0 0 0 0.87888 1 20030 20030 0.52476 0 1 4257700 32779 19619;6731;16493 21949 21964 32377 32377 -0.08893300261229342 PDGGGGGGGS 10 Unmodified _PDGGGGGGGS_ 0 0 0 REV__ENSG00000206418|ENST00000649141|RAB12 REV__ENSG00000206418|ENST00000649141|RAB12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 359.1609191894531 2 359.143549 716.272546 NaN NaN NaN NaN NaN NaN NaN 20.604 1 20.604 20.104 21.104 0 0 0 0 2.8426 1 3416 3416 0.0013812 0 1 + 32780 19619 21950 21965 32378 32378 -0.09693932578079512 PDGIRHIR 8 Unmodified _PDGIRHIR_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 482.2767028808594 2 482.277775 962.540997 NaN NaN NaN NaN NaN NaN NaN 149.07 1 149.07 148.57 149.57 0 0 0 0 0.23025 1 29841 29841 0.25148 0 1 32781 7215 21951 21966 32379 32379 0.058228314600341946 PDGSAHLDSLY 11 Unmodified _PDGSAHLDSLY_ 0 0 0 REV__ENSG00000112685|ENST00000230449|EXOC2 REV__ENSG00000112685|ENST00000230449|EXOC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.260986328125 2 587.772385 1173.53022 0.34607 0.00020341 -0.26862 -0.00015789 0.077453 4.5525E-05 587.7721926577537 32.902 0.627 32.902 32.607 33.234 0 66 17 6 0 0 0 0.7348 1 5982 5982 9.3831 0.63772 1 46241000 + 32782 15308 21952 21967 32380 32380 -0.049606604955670264 PDGYSGRNCE 10 Unmodified _PDGYSGRNCE_ 0 0 0 nc|ENSG00000184916|Q9Y219-2|JAG2;ENSG00000184916|ENST00000331782|JAG2;JAG2|p.G473Afs*7|1|0.31|ENSG00000184916|chr14:105150875-105150875|C/-|frameshift_variant;JAG2|p.G741Afs*21|5|0.27|ENSG00000184916|chr14:105148144-105148144|G/-|frameshift_variant nc|ENSG00000184916|Q9Y219-2|JAG2 nc|ENSG00000184916|Q9Y219-2|JAG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 366.8591613769531 3 366.482067 1096.42437 -1.3304 -0.00048757 0.84686 0.00031036 -0.48354 -0.00017721 366.4823588104856 21.918 0.44041 20.197 19.985 20.425 -1.7211 23 12 3 0 0 0 1.1335 1 3424 3424 0.0013812 0 1 844250 32783 6942 21953 21968 32381 32381 -0.11998319612689556 PDHSEVPAE 9 Unmodified _PDHSEVPAE_ 0 0 0 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;CHD9|p.N1798Tfs*17|1|0.12|ENSG00000177200|chr16:53292931-53292931|A/-|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25274658203125 2 490.719621 979.42469 0.13324 6.5386E-05 0.47673 0.00023394 0.60997 0.00029933 490.7194332898115 134.44 0.62819 129.57 129.23 129.86 -4.8726 21 17 2 0 0 0 0.81703 1 25814 25814 3.2813 0 1 1110700 32784 522 21954 21969 32382 32382 -0.06584576621185079 PDHSEVPAE 9 Unmodified _PDHSEVPAE_ 0 0 0 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;CHD9|p.N1798Tfs*17|1|0.12|ENSG00000177200|chr16:53292931-53292931|A/-|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2527770996094 2 490.719621 979.42469 -0.026913 -1.3207E-05 -0.11377 -5.5828E-05 -0.14068 -6.9035E-05 490.7194222787748 134.45 0.63168 129.63 129.2 129.83 -4.8175 19 17 2 0 0 0 0.81703 1 25839 25839 6.2058 0 1 1118900 32785 522 21954 21969 32383 32383 -0.06584576621185079 PDIEEEQPS 9 Unmodified _PDIEEEQPS_ 0 0 0 REV__ENSG00000007520|ENST00000007390|TSR3 REV__ENSG00000007520|ENST00000007390|TSR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2783203125 2 522.230019 1042.44548 -0.67287 -0.00035139 0.06279 3.2791E-05 -0.61008 -0.0003186 522.2302210489624 39.133 1.613 36.691 36.054 37.667 -2.4419 146 45 5 0 0 0 0.48644 1 6862 6862 20.454 20.454 1 334280000 + 32786 13890 21955 21970 32384 32384 -0.07404031032183411 PDIKKATQ 8 Unmodified _PDIKKATQ_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.28289794921875 2 450.761092 899.507631 -0.3047 -0.00013735 0.40951 0.00018459 0.10481 4.7243E-05 450.76126901728964 52.557 0.40871 49.673 49.449 49.858 -2.8837 19 11 2 0 0 0 0.98792 1 9996 9996 5.2307 0 1 1223500 32787 6829 21956 21971 32385 32385 0.053857848974644185 PDIKKVQQLLQ 11 Unmodified _PDIKKVQQLLQ_ 0 0 0 nc|ENSG00000198001|Q9NWZ3-2|IRAK4;ENSG00000198001|ENST00000613694|IRAK4 nc|ENSG00000198001|Q9NWZ3-2|IRAK4 nc|ENSG00000198001|Q9NWZ3-2|IRAK4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2284240722656 3 437.266122 1308.77654 NaN NaN NaN NaN NaN NaN NaN 110.42 1 106.04 105.54 106.54 -4.3776 0 0 0 0.23379 1 21765 21765 2.4348 0.18206 1 32788 7421 21957 21972 32386 32386 0.1344987907414179 PDIRQRRLHRH 11 Unmodified _PDIRQRRLHRH_ 0 0 0 REV__ENSG00000169221|ENST00000409939|TBC1D10B REV__ENSG00000169221|ENST00000409939|TBC1D10B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3812255859375 2 742.426899 1482.83924 NaN NaN NaN NaN NaN NaN NaN 141.84 1 136.85 136.35 137.35 -4.9877 0 0 0 0.22632 1 27324 27324 0.0059557 0.0053913 1 + 32789 18088 21958 21973 32387 32387 0.11713882705544165 PDKLRVLAI 9 Unmodified _PDKLRVLAI_ 0 0 0 REV__C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant REV__C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.2275085449219 3 342.221965 1023.64407 NaN NaN NaN NaN NaN NaN NaN 57.503 1 54.306 53.806 54.806 -3.197 0 0 0 0.23508 1 10719 10719 1.0715 0 1 + 32790 13224 21959 21974 32388 32388 0.13318899127966688 PDKSLRTY 8 Unmodified _PDKSLRTY_ 0 0 0 REV__KIDINS220|p.R1739C|1|0.35|ENSG00000134313|chr2:8730821-8730821|G/A|missense_variant REV__KIDINS220|p.R1739C|1|0.35|ENSG00000134313|chr2:8730821-8730821|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2640686035156 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 82.306 1 78.749 78.249 79.249 -3.557 0 0 0 0.21039 1 16085 16085 16.942 2.104 1 + 32791 16203 21960 21975 32389 32389 0.02332883409144415 PDLALACLC 9 Unmodified _PDLALACLC_ 0 0 0 nc|ENSG00000185437|P55822|SH3BGR nc|ENSG00000185437|P55822|SH3BGR nc|ENSG00000185437|P55822|SH3BGR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2270812988281 2 459.724806 917.43506 -0.041274 -1.8975E-05 0.74914 0.0003444 0.70786 0.00032542 459.725090508121 47.758 0.60172 44.816 44.615 45.216 -2.9421 31 16 3 0 0 0 0.66537 1 8701 8701 8.5933 8.5933 1 3047000 32792 12511 21961 21976 32390 32390 -0.02696008491966495 PDLAVAPG 8 Unmodified _PDLAVAPG_ 0 0 0 ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 370.17742919921875 2 370.202879 738.391205 NaN NaN NaN NaN NaN NaN NaN 43.838 1 41.09 40.59 41.59 -2.7475 0 0 0 0.23711 1 7927 7927 0.62683 0 1 32793 3588 21962 21977 32391 32391 0.011544663975655567 PDLEKAAAF 9 Unmodified _PDLEKAAAF_ 0 0 0 ENSG00000124370|ENST00000244217|MCEE ENSG00000124370|ENST00000244217|MCEE ENSG00000124370|ENST00000244217|MCEE MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7657165527344 2 481.2531 960.491647 0.44213 0.00021278 -0.084305 -4.0572E-05 0.35782 0.0001722 481.2529912921518 79.439 1.427 79.439 78.683 80.11 0 138 40 4 0 0 0 0.40602 1 15327 15327 25.399 0.72543 1 58446000 32794 3311 21963 21978 32392 32392 0.009820786605587273 PDLESIIAGK 10 Unmodified _PDLESIIAGK_ 0 0 0 tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1 tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1 tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2589111328125 2 521.792589 1041.57063 0.21337 0.00011134 0.22623 0.00011804 0.4396 0.00022938 521.7926826199779 154.84 0.6418 154.84 154.5 155.14 0 28 17 2 0 0 0 0.074859 1 31054 31054 71.922 2.8174 1 5446100 32795 26337 21964 21979 32393 32393 0.0515030589485832 PDLESIIAGK 10 Unmodified _PDLESIIAGK_ 0 0 0 tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1 tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1 tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2603759765625 2 521.792589 1041.57063 -0.056657 -2.9563E-05 -0.32273 -0.0001684 -0.37939 -0.00019796 522.2939416836101 159.59 0.70767 154.8 154.48 155.19 -4.7952 30 19 2 0 0 0 0.093758 1 31746 31746 62.573 10.304 1 3335100 32796 26337 21964 21979 32394 32394 0.0515030589485832 PDLESIIAGK 10 Unmodified _PDLESIIAGK_ 0 0 0 tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1 tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1 tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.257080078125 2 521.792589 1041.57063 -0.54139 -0.00028249 0.63756 0.00033267 0.096167 5.0179E-05 521.7928281582508 160.23 0.56258 155 154.8 155.37 -5.2299 24 15 2 0 0 0 0.23765 1 31083 31083 41.84 9.0539 1 2844300 32797 26337 21964 21979 32395 32395 0.0515030589485832 PDLESIIAGK 10 Unmodified _PDLESIIAGK_ 0 0 0 tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1 tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1 tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2798461914062 2 521.792589 1041.57063 0.49555 0.00025858 0.024922 1.3004E-05 0.52048 0.00027158 521.7924901411449 160.27 0.67075 155.02 154.72 155.39 -5.2526 40 18 3 0 0 0 0.056577 2 31122 31122;31134 81.89 11.848 1 2933900 32798 26337 21964 21979 32396;32397 32396 0.0515030589485832 PDLGGPPP 8 Unmodified _PDLGGPPP_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;DIP2A|p.P1075Rfs*15|1|0.35|ENSG00000160305|chr21:46554640-46554640|C/-|frameshift_variant;nc|ENSG00000160305|Q14689-5|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;ENST00000480553.1_1_21:47959692-47966956:+|nuORF nc|ENSG00000160305|Q14689-6|DIP2A nc|ENSG00000160305|Q14689-6|DIP2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2060241699219 2 375.195054 748.375555 -0.15663 -5.8765E-05 0.16795 6.3012E-05 0.011319 4.2467E-06 375.1950750954253 33.089 0.42205 33.089 32.885 33.307 0 26 11 3 0 0 0 0.56049 1 6033 6033 24.674 0 1 3792000 32799 5248 21965 21980 32398 32398 -0.008698201194761168 PDLGGPPP 8 Unmodified _PDLGGPPP_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;DIP2A|p.P1075Rfs*15|1|0.35|ENSG00000160305|chr21:46554640-46554640|C/-|frameshift_variant;nc|ENSG00000160305|Q14689-5|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;ENST00000480553.1_1_21:47959692-47966956:+|nuORF nc|ENSG00000160305|Q14689-6|DIP2A nc|ENSG00000160305|Q14689-6|DIP2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.20465087890625 2 375.195054 748.375555 -0.53202 -0.00019961 0.49899 0.00018722 -0.033026 -1.2391E-05 375.1952170877907 35.428 0.53653 33.034 32.74 33.276 -2.3938 28 14 3 0 0 0 0.56049 1 6505 6505 24.674 0 1 2281000 32800 5248 21965 21980 32399 32399 -0.008698201194761168 PDLGGPPP 8 Unmodified _PDLGGPPP_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;DIP2A|p.P1075Rfs*15|1|0.35|ENSG00000160305|chr21:46554640-46554640|C/-|frameshift_variant;nc|ENSG00000160305|Q14689-5|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;ENST00000480553.1_1_21:47959692-47966956:+|nuORF nc|ENSG00000160305|Q14689-6|DIP2A nc|ENSG00000160305|Q14689-6|DIP2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2050476074219 2 375.195054 748.375555 0.16443 6.1691E-05 -0.24958 -9.3641E-05 -0.085153 -3.1949E-05 375.19489931353036 35.3 0.48981 33.047 32.776 33.266 -2.2527 22 13 2 0 0 0 0.40661 1 6205 6205 32.117 0 1 2326100 32801 5248 21965 21980 32400 32400 -0.008698201194761168 PDLGRRLH 8 Unmodified _PDLGRRLH_ 0 0 0 REV__ENST00000515251.1_1_4:120376278-120381900:+|nuORF REV__ENST00000515251.1_1_4:120376278-120381900:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7861633300781 2 482.277775 962.540997 -0.13891 -6.6994E-05 0.084816 4.0905E-05 -0.054095 -2.6089E-05 482.2778775871762 71.057 0.58659 71.057 70.592 71.179 0 19 16 2 0 0 0 0.89552 1 13708 13708 19.439 0 1 1543700 + 32802 22585 21966 21981 32401 32401 0.05822831460022826 PDLGTRRLGT 10 Unmodified _PDLGTRRLGT_ 0 0 0 nc|ENSG00000196460|Q6ZV50|RFX8 nc|ENSG00000196460|Q6ZV50|RFX8 nc|ENSG00000196460|Q6ZV50|RFX8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77685546875 2 543.306729 1084.59891 0.59228 0.00032179 -0.34429 -0.00018706 0.24798 0.00013473 543.3066087701056 31.192 0.48706 29.044 28.813 29.3 -2.1483 29 13 3 0 0 0 0.871 1 5414 5414 1.3295 0 1 2089000 32803 12535 21967 21982 32402 32402 0.05999048594821943 PDLLDKYPSI 10 Unmodified _PDLLDKYPSI_ 0 0 0 REV__ENST00000514708.5_1_4:1309356-1332271:+|nuORF REV__ENST00000514708.5_1_4:1309356-1332271:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7243957519531 3 387.544773 1159.61249 NaN NaN NaN NaN NaN NaN NaN 18.92 1 17.285 16.785 17.785 -1.6351 0 0 0 0.22588 1 2826 2826 3.5871 0 1 + 32804 14544 21968 21983 32403 32403 0.03906861583368482 PDLRNMHILIQ 11 Unmodified _PDLRNMHILIQ_ 0 0 0 REV__KHDC3L|p.V76M|1|0.64|ENSG00000203908|chr6:73363151-73363151|G/A|missense_variant REV__KHDC3L|p.V76M|1|0.64|ENSG00000203908|chr6:73363151-73363151|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.28289794921875 3 450.583456 1348.72854 -0.3009 -0.00013558 0.95756 0.00043146 0.65666 0.00029588 450.58351416961125 52.318 0.4151 49.436 49.308 49.723 -2.8824 18 11 2 0 0 0 0.96104 1 9996 9996 2.4348 0 1 1436500 + 32805 23709 21969 21984 32404 32404 0.06812481882457178 PDLSRPLPPS 10 Unmodified _PDLSRPLPPS_ 0 0 0 REV__ENST00000345016.9_1_19:2151256-2151514:-|nuORF REV__ENST00000345016.9_1_19:2151256-2151514:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 111.68 1 107.45 106.95 107.95 -4.2289 0 0 0 0.22588 1 21501 21501 5.4027 0.10583 1 + 32806 20747 21970 21985 32405 32405 0.0461712798901317 PDLTRWRK 8 Unmodified _PDLTRWRK_ 0 0 0 ENSG00000188523|ENST00000393216|CFAP77;nc|ENSG00000188523|Q6ZQR2|CFAP77 ENSG00000188523|ENST00000393216|CFAP77 ENSG00000188523|ENST00000393216|CFAP77 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55657958984375 3 357.873447 1070.59851 -0.47191 -0.00016888 -0.84442 -0.0003022 -1.3163 -0.00047108 357.8731202053751 17.563 0.51697 16.252 16.03 16.547 -1.3109 41 14 4 0 0 0 1.0265 1 2858 2858 1.6526 0 1 27191000 32807 7173 21971 21986 32406 32406 0.06603673665608767 PDLVGHSRY 9 Unmodified _PDLVGHSRY_ 0 0 0 REV__nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1 REV__nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2672119140625 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 102.62 1 98.301 97.801 98.801 -4.3208 0 0 0 0.1761 1 19648 19648 26.884 3.7352 1 + 32808 15640 21972 21987 32407 32407 3.401640651645721E-05 PDLVLRRR 8 Unmodified _PDLVLRRR_ 0 0 0 REV__ENST00000562977.1_1_16:28962332-28970171:+|nuORF REV__ENST00000562977.1_1_16:28962332-28970171:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.2119445800781 3 342.217325 1023.63015 NaN NaN NaN NaN NaN NaN NaN 79.746 1 76.07 75.57 76.57 -3.676 0 0 0 0.21486 1 15197 15197 3.9444 0 1 + 32809 18530 21973 21988 32408 32408 0.11927666419569505 PDMGPLVSI 9 Unmodified _PDMGPLVSI_ 0 0 0 REV__DNAH2|p.L4101V|1|0.33|ENSG00000183914|chr17:7831156-7831156|T/G|missense_variant REV__DNAH2|p.L4101V|1|0.33|ENSG00000183914|chr17:7831156-7831156|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16552734375 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 121.36 1 116.82 116.32 117.32 -4.5476 0 0 0 0.19636 1 23922 23922 0.40827 0.2854 1 + 32810 13712 21974 21989 32409 32409 0.00691620414204408 PDMSNMLM 8 Unmodified _PDMSNMLM_ 0 0 0 REV__GDF6|p.T405M|1|0.1|ENSG00000156466|chr8:96144717-96144717|G/A|missense_variant REV__GDF6|p.T405M|1|0.1|ENSG00000156466|chr8:96144717-96144717|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.17486572265625 3 313.464192 937.370745 0.083825 2.6276E-05 -0.452 -0.00014169 -0.36817 -0.00011541 313.4639901037684 58.75 1.1669 55.499 55.032 56.198 -3.2517 60 32 3 0 0 0 1.027 1 10934 10934 3.2813 3.2813 1 6096800 + 32811 23567 21975 21990 32410 32410 -0.1004453164040342 PDMVEGPAK 9 Unmodified _PDMVEGPAK_ 0 0 0 REV__VANGL1|p.L451Cfs*21|1|0.34|ENSG00000173218|chr1:115691153-115691153|C/-|frameshift_variant REV__VANGL1|p.L451Cfs*21|1|0.34|ENSG00000173218|chr1:115691153-115691153|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.157470703125 3 315.156632 942.448068 NaN NaN NaN NaN NaN NaN NaN 79.408 1 79.408 78.908 79.908 0 0 0 0 0.23508 1 15452 15452 1.0715 0 1 + 32812 18340 21976 21991 32411 32411 -0.025458541082116426 PDNHPHPD 8 Unmodified _PDNHPHPD_ 0 0 0 REV__ENST00000526143.2_1_11:118795970-118796195:-|nuORF REV__ENST00000526143.2_1_11:118795970-118796195:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2414245605469 2 464.699023 927.383493 0.38517 0.00017899 0.74982 0.00034844 1.135 0.00052743 464.69963521653733 123.93 0.60289 119.2 118.85 119.46 -4.731 22 16 2 0 0 0 8448 1 23758 23758 1.7423 1.4908 1 867860 + 32813 22689 21977 21992 32412 32412 -0.08310292870010016 PDNPADSPAP 10 Unmodified _PDNPADSPAP_ 0 0 0 SGIP1|p.G427Dfs*71|1|0.38|ENSG00000118473|chr1:66682328-66682328|C/-|frameshift_variant;SGIP1|p.N627Tfs*21|1|0.07|ENSG00000118473|chr1:66729399-66729399|A/-|frameshift_variant;ENSG00000118473|ENST00000371037|SGIP1;nc|ENSG00000118473|Q9BQI5-2|SGIP1;nc|ENSG00000118473|Q9BQI5-3|SGIP1 SGIP1|p.G427Dfs*71|1|0.38|ENSG00000118473|chr1:66682328-66682328|C/-|frameshift_variant SGIP1|p.G427Dfs*71|1|0.38|ENSG00000118473|chr1:66682328-66682328|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2666015625 2 490.719621 979.42469 0.40843 0.00020043 -0.18999 -9.323E-05 0.21844 0.0001072 490.7193752554798 42.288 0.65298 42.288 42.083 42.736 0 31 18 2 0 0 0 0.59264 1 7901 7901 22.736 0 1 879520 32814 3036 21978 21993 32413 32413 -0.06584576621185079 PDPERESV 8 Unmodified _PDPERESV_ 0 0 0 REV__RCOR2|p.G215R|1|0.39|ENSG00000167771|chr11:63914293-63914293|C/T|missense_variant REV__RCOR2|p.G215R|1|0.39|ENSG00000167771|chr11:63914293-63914293|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2592468261719 2 464.722164 927.429775 0.35914 0.0001669 -0.61483 -0.00028573 -0.25569 -0.00011882 464.72187312763873 28.668 0.48586 26.672 26.414 26.9 -1.9962 31 13 3 0 0 0 0.83888 1 4880 4880 18.146 11.423 1 2218900 + 32815 24556 21979 21994 32414 32414 -0.036842727585622015 PDPLPLSLVK 10 Unmodified _PDPLPLSLVK_ 0 0 0 REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2 REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2044372558594 3 360.221742 1077.6434 NaN NaN NaN NaN NaN NaN NaN 40.077 1 37.537 37.037 38.037 -2.5398 0 0 0 2.8426 1 7172 7172 0.013265 0.0098847 1 + 32816 19502 21980 21995 32415 32415 0.10768059688280118 PDPLSFKSA 9 Unmodified _PDPLSFKSA_ 0 0 0 CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant;CUX2|p.P1429Lfs*23|1|0.33|ENSG00000111249|chr12:111348144-111348144|C/-|frameshift_variant;ENSG00000111249|ENST00000261726|CUX2 CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant CUX2|p.A1430Cfs*11|1|0.26|ENSG00000111249|chr12:111348143-111348144|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2547607421875 2 481.2531 960.491647 -0.1499 -7.2139E-05 -1.077 -0.00051832 -1.2269 -0.00059046 481.2530802264014 25.602 0.65879 23.748 23.638 24.297 -1.8534 27 18 3 0 0 0 0.40602 1 4298 4298 25.399 3.6527 1 696730 32817 758 21981 21996 32416 32416 0.00982078660570096 PDPPAPAPLS 10 Unmodified _PDPPAPAPLS_ 0 0 0 PSD|p.A462S|1|0.34|ENSG00000059915|chr10:102413938-102413938|C/A|missense_variant PSD|p.A462S|1|0.34|ENSG00000059915|chr10:102413938-102413938|C/A|missense_variant PSD|p.A462S|1|0.34|ENSG00000059915|chr10:102413938-102413938|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2526550292969 2 481.2531 960.491647 -0.33436 -0.00016091 0.65815 0.00031674 0.32379 0.00015582 481.25333464501205 66.996 0.67012 66.996 66.698 67.368 0 30 18 2 0 0 0 0.48672 1 12998 12998 25.399 0.72543 1 4930600 32818 12837 21982 21997 32417 32417 0.00982078660570096 PDPRVPSPV 9 Unmodified _PDPRVPSPV_ 0 0 0 TNS2|p.G362Rfs*43|1|0.33|ENSG00000111077|chr12:53058087-53058088|-/A|frameshift_variant TNS2|p.G362Rfs*43|1|0.33|ENSG00000111077|chr12:53058087-53058088|-/A|frameshift_variant TNS2|p.G362Rfs*43|1|0.33|ENSG00000111077|chr12:53058087-53058088|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7838439941406 2 482.266542 962.51853 -0.033673 -1.6239E-05 0.13467 6.4947E-05 0.101 4.8708E-05 482.2664499916594 74.27 2.0969 70.906 69.938 72.035 -3.3643 103 59 3 0 0 0 0.14967 1 14605 14605 41.84 0 1 2838900 32819 25867 21983 21998 32418 32418 0.03577187271753246 PDPSSFSRA 9 Unmodified _PDPSSFSRA_ 0 0 0 OPRD1|p.G338S|1|0.26|ENSG00000116329|chr1:28863176-28863176|G/A|missense_variant;ENSG00000116329|ENST00000234961|OPRD1 OPRD1|p.G338S|1|0.26|ENSG00000116329|chr1:28863176-28863176|G/A|missense_variant OPRD1|p.G338S|1|0.26|ENSG00000116329|chr1:28863176-28863176|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.785400390625 2 482.230156 962.445759 0.039284 1.8944E-05 -1.1291 -0.00054448 -1.0898 -0.00052554 482.2293995275916 45.273 1.3407 42.483 41.778 43.119 -2.79 62 37 2 0 0 0 0.38188 1 8512 8512 26.884 0 1 1380600 32820 2924 21984 21999 32419 32419 -0.03696566521659861 PDPSSFSRA 9 Unmodified _PDPSSFSRA_ 0 0 0 OPRD1|p.G338S|1|0.26|ENSG00000116329|chr1:28863176-28863176|G/A|missense_variant;ENSG00000116329|ENST00000234961|OPRD1 OPRD1|p.G338S|1|0.26|ENSG00000116329|chr1:28863176-28863176|G/A|missense_variant OPRD1|p.G338S|1|0.26|ENSG00000116329|chr1:28863176-28863176|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.230156 962.445759 -0.2006 -9.6735E-05 -0.36214 -0.00017463 -0.56274 -0.00027137 482.22962034028745 45.599 1.1612 42.733 41.835 42.996 -2.8665 0.26518 0.00012085 NaN 26.884 61 32 3 NaN NaN NaN NaN 0 NaN NaN 0 1131100 32821 2924 21984 21999 -0.03696566521659861 PDQECDGCTC 10 Unmodified _PDQECDGCTC_ 0 0 0 REV__ENST00000312989.11_1_11:67165675-67165951:-|nuORF REV__ENST00000312989.11_1_11:67165675-67165951:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.55999755859375 3 357.445637 1069.31508 NaN NaN NaN NaN NaN NaN NaN 14.342 1 13.169 12.669 13.669 -1.173 0 0 0 2.8426 1 1933 1933 0.13989 0.04505 1 + 32822 20500 21985 22000 32420 32420 -0.21680409618670637 PDQHNRNY 8 Unmodified _PDQHNRNY_ 0 0 0 REV__ENSG00000132356|ENST00000397128|PRKAA1 REV__ENSG00000132356|ENST00000397128|PRKAA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2792358398438 2 522.236304 1042.45806 -0.22893 -0.00011956 -0.65509 -0.00034211 -0.88402 -0.00046167 522.736924435274 45.091 0.60699 42.301 41.919 42.526 -2.79 22 16 2 0 0 0 1.0095 1 8422 8422 0 0 1 965630 + 32823 16109 21986 22001 32421 32421 -0.061475300586153026 PDQLDPGT 8 Unmodified _PDQLDPGT_ 0 0 0 ENST00000532826.5_1_1:236689310-236702461:+|nuORF;LGALS8|p.G205Efs*3|1|0.42|ENSG00000116977|chr1:236543618-236543618|T/-|frameshift_variant;ENST00000366583.6_1_1:236689310-236706138:+|nuORF;ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8 ENST00000532826.5_1_1:236689310-236702461:+|nuORF ENST00000532826.5_1_1:236689310-236702461:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3921508789062 1 842.389039 841.381762 0.33879 0.00028539 0.050908 4.2884E-05 0.38969 0.00032827 842.3889367930543 85.447 0.53397 81.783 81.466 82 -3.6641 23 14 2 0 0 0 0.70344 1 16713 16713 13.906 1.3745 1 2269600 32824 2963 21987 22002 32422 32422 -0.0452734667861705 PDQPWRPRQ 9 Unmodified _PDQPWRPRQ_ 0 0 0 ENST00000312579.3_1_11:65658177-65658288:+|nuORF ENST00000312579.3_1_11:65658177-65658288:+|nuORF ENST00000312579.3_1_11:65658177-65658288:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2907409667969 3 393.872106 1178.59449 -0.11909 -4.6904E-05 -1.1239 -0.00044266 -1.243 -0.00048956 393.87161727590995 18.247 0.34728 18.247 18.09 18.437 0 21 9 4 0 0 0 0.88413 1 2948 2948 0.23584 0 1 3133100 32825 8659 21988 22003 32423 32423 0.012335841718822849 PDQPWRPRQ 9 Unmodified _PDQPWRPRQ_ 0 0 0 ENST00000312579.3_1_11:65658177-65658288:+|nuORF ENST00000312579.3_1_11:65658177-65658288:+|nuORF ENST00000312579.3_1_11:65658177-65658288:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 393.872106 1178.59449 -0.042605 -1.6781E-05 -1.442 -0.00056797 -1.4846 -0.00058475 393.8715320871119 19.689 0.48666 18.292 18.029 18.516 -1.3966 0.073007 -0.00026029 NaN 0.23584 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2748800 32826 8659 21988 22003 0.012335841718822849 PDQPWRPRQ 9 Unmodified _PDQPWRPRQ_ 0 0 0 ENST00000312579.3_1_11:65658177-65658288:+|nuORF ENST00000312579.3_1_11:65658177-65658288:+|nuORF ENST00000312579.3_1_11:65658177-65658288:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 393.872106 1178.59449 -0.3147 -0.00012395 -1.081 -0.00042576 -1.3957 -0.00054971 393.87170441051575 19.523 0.34163 18.198 18.074 18.416 -1.3251 -0.021258 0.00016634 NaN 0.23584 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2170900 32827 8659 21988 22003 0.012335841718822849 PDQPWRPRQ 9 Unmodified _PDQPWRPRQ_ 0 0 0 ENST00000312579.3_1_11:65658177-65658288:+|nuORF ENST00000312579.3_1_11:65658177-65658288:+|nuORF ENST00000312579.3_1_11:65658177-65658288:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 393.872106 1178.59449 -1.5567 -0.00061312 -1.3371 -0.00052665 -2.8938 -0.0011398 393.87197517704317 19.774 0.62442 18.139 17.67 18.295 -1.6351 -0.079951 -0.00013633 NaN 0.23584 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1521400 32828 8659 21988 22003 0.012335841718822849 PDQQEEKLRSQ 11 Unmodified _PDQQEEKLRSQ_ 0 0 0 nc|ENSG00000164627|Q6ZMV9-4|KIF6;nc|ENSG00000164627|Q6ZMV9-2|KIF6;nc|ENSG00000164627|Q6ZMV9-3|KIF6;ENSG00000164627|ENST00000287152|KIF6 nc|ENSG00000164627|Q6ZMV9-4|KIF6 nc|ENSG00000164627|Q6ZMV9-4|KIF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7482604980469 3 453.228395 1356.66336 0.92708 0.00042018 -0.85129 -0.00038583 0.075796 3.4353E-05 453.2279742791544 26.787 0.44382 25.005 24.794 25.238 -1.7821 31 12 4 0 0 0 0.96191 1 4766 4766 1.7824 0 1 1628200 32829 5557 21989 22004 32424 32424 -0.0007084110970936308 PDQQEEKLRSQ 11 Unmodified _PDQQEEKLRSQ_ 0 0 0 nc|ENSG00000164627|Q6ZMV9-4|KIF6;nc|ENSG00000164627|Q6ZMV9-2|KIF6;nc|ENSG00000164627|Q6ZMV9-3|KIF6;ENSG00000164627|ENST00000287152|KIF6 nc|ENSG00000164627|Q6ZMV9-4|KIF6 nc|ENSG00000164627|Q6ZMV9-4|KIF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7475891113281 3 453.228395 1356.66336 -0.21355 -9.6785E-05 0.48258 0.00021872 0.26903 0.00012193 453.22862700304944 25.076 0.82886 23.223 22.981 23.809 -1.8534 78 23 5 0 0 0 0.79484 1 4200 4200 4.3317 1.012 1 12715000 32830 5557 21989 22004 32425 32425 -0.0007084110970936308 PDQVFRMFPD 10 Unmodified _PDQVFRMFPD_ 0 0 0 ENSG00000140968|ENST00000268638|IRF8 ENSG00000140968|ENST00000268638|IRF8 ENSG00000140968|ENST00000268638|IRF8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 417.88580322265625 3 417.865741 1250.57539 NaN NaN NaN NaN NaN NaN NaN 20.127 1 18.73 18.23 19.23 -1.3966 0 0 0 0.22588 1 3350 3350 3.5871 0 1 32831 4336 21990 22005 32426 32426 -0.03987133234022622 PDRCSRHPR 9 Unmodified _PDRCSRHPR_ 0 0 0 REV__ENSG00000161664|ENST00000293414|ASB16 REV__ENSG00000161664|ENST00000293414|ASB16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2226257324219 3 375.189441 1122.54649 NaN NaN NaN NaN NaN NaN NaN 28.867 1 26.911 26.411 27.411 -1.9561 0 0 0 0.23508 1 5177 5177 4.1895 0.86986 1 + 32832 17464 21991 22006 32427 32427 -0.009878130198103463 PDRFLNSPQR 10 Unmodified _PDRFLNSPQR_ 0 0 0 CAMTA2|p.P866Lfs*9|3|0.42|ENSG00000108509|chr17:4972443-4972443|G/-|frameshift_variant;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;CAMTA2|p.S432Qfs*49|1|0.13|ENSG00000108509|chr17:4980022-4980028|CTACTGA/-|frameshift_variant;CAMTA2|p.P466Lfs*17|1|0.21|ENSG00000108509|chr17:4979925-4979925|G/-|frameshift_variant CAMTA2|p.P866Lfs*9|3|0.42|ENSG00000108509|chr17:4972443-4972443|G/-|frameshift_variant CAMTA2|p.P866Lfs*9|3|0.42|ENSG00000108509|chr17:4972443-4972443|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1170349121094 3 410.551033 1228.63127 -0.47936 -0.0001968 0.22181 9.1063E-05 -0.25755 -0.00010574 410.5511122276235 39.067 0.48917 36.518 36.192 36.681 -2.5491 29 13 3 0 0 0 0.91149 1 7198 7198 0.62683 0 1 3185400 32833 376 21992 22007 32428 32428 0.026098359977822838 PDRGKLRNPA 10 Unmodified _PDRGKLRNPA_ 0 0 0 SOWAHB|p.H581Pfs*14|1|0.25|ENSG00000186212|chr4:76896108-76896109|-/GG|frameshift_variant;ENSG00000186212|ENST00000334306|SOWAHB SOWAHB|p.H581Pfs*14|1|0.25|ENSG00000186212|chr4:76896108-76896109|-/GG|frameshift_variant SOWAHB|p.H581Pfs*14|1|0.25|ENSG00000186212|chr4:76896108-76896109|-/GG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2154846191406 3 375.215873 1122.62579 -0.62468 -0.00023439 0.35526 0.0001333 -0.26942 -0.00010109 375.21587156443104 41.199 0.53421 38.709 38.422 38.957 -2.4896 18 14 2 0 0 0 0.53316 1 7361 7361 0.13989 0 1 635720 32834 7044 21993 22008 32429 32429 0.06938157205991047 PDRIPTMRR 9 Unmodified _PDRIPTMRR_ 0 0 0 REV__ENST00000398637.9_1_12:46662646-46662751:-|nuORF REV__ENST00000398637.9_1_12:46662646-46662751:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2128601074219 3 381.213475 1140.6186 -0.21192 -8.0787E-05 0.23437 8.9345E-05 0.022448 8.5573E-06 381.2134761060958 16.595 0.34132 16.595 16.405 16.746 0 14 9 2 0 0 0 0.69259 1 2570 2570 4.1895 0.86986 1 900380 + 32835 21330 21994 22009 32430 32430 0.053911013339075 PDRIPTMRR 9 Unmodified _PDRIPTMRR_ 0 0 0 REV__ENST00000398637.9_1_12:46662646-46662751:-|nuORF REV__ENST00000398637.9_1_12:46662646-46662751:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 381.213475 1140.6186 -0.21192 -8.0787E-05 0.23437 8.9345E-05 0.022448 8.5573E-06 381.2134761060958 16.595 0.34132 16.595 16.405 16.746 0 -0.089397 4.3276E-05 NaN 4.1895 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 900380 + 32836 21330 21994 22009 0.053911013339075 PDRIPTMRR 9 Unmodified _PDRIPTMRR_ 0 0 0 REV__ENST00000398637.9_1_12:46662646-46662751:-|nuORF REV__ENST00000398637.9_1_12:46662646-46662751:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 381.213475 1140.6186 -0.40993 -0.00015627 0.14817 5.6486E-05 -0.26176 -9.9786E-05 381.21348003100957 17.962 0.31019 16.689 16.52 16.831 -1.2722 0.0046215 -5.5301E-05 NaN 4.1895 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 412540 + 32837 21330 21994 22009 0.053911013339075 PDRLRRFLRTL 11 Unmodified _PDRLRRFLRTL_ 0 0 0 nc|ENSG00000140451|Q9H611-2|PIF1;ENST00000560444.1_1_15:65114569-65116540:-|nuORF;PIF1|p.T248Kfs*34|1|0.52|ENSG00000140451|chr15:64822340-64822340|G/-|frameshift_variant;PIF1|p.A479Pfs*3|1|0.3|ENSG00000140451|chr15:64819122-64819122|C/-|frameshift_variant;nc|ENSG00000140451|Q9H611-4|PIF1;ENSG00000140451|ENST00000559239|PIF1;nc|ENSG00000140451|Q9H611-3|PIF1;ENST00000560504.1_1_15:65115949-65116540:-|nuORF nc|ENSG00000140451|Q9H611-2|PIF1 nc|ENSG00000140451|Q9H611-2|PIF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.783447265625 3 481.628276 1441.863 0.2098 0.00010105 -3.5259 -0.0016982 -3.3161 -0.0015971 481.62633798236175 142.35 0.1057 137.46 137.38 137.49 -4.8982 4 2 2 0 0 0 0.89021 1 27472 27472 0.0059557 0 1 431390 32838 4300 21995 22010 32431 32431 0.1597430341935251 PDRQEHDLY 9 Unmodified _PDRQEHDLY_ 0 0 0 REV__ENSG00000073711|ENST00000264977|PPP2R3A REV__ENSG00000073711|ENST00000264977|PPP2R3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 587.2201538085938 2 586.770177 1171.5258 NaN NaN NaN NaN NaN NaN NaN 35.959 1 33.565 33.065 34.065 -2.3938 0 0 0 0.23508 1 6633 6633 8.5933 0 1 + 32839 14303 21996 22011 32432 32432 -0.05310124918469228 PDRRGSSSIL 10 Unmodified _PDRRGSSSIL_ 0 0 0 REV__nc|ENSG00000185989|Q14644-2|RASA3 REV__nc|ENSG00000185989|Q14644-2|RASA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7728881835938 2 544.296362 1086.57817 0.3452 0.00018789 -0.19173 -0.00010436 0.15346 8.353E-05 544.2962055998194 32.485 0.44935 32.485 32.261 32.71 0 21 12 2 0 0 0 0.84281 1 5950 5950 13.906 3.0821 1 2289500 + 32840 19004 21997 22012 32433 32433 0.03834458215169434 PDSCCHHPG 9 Unmodified _PDSCCHHPG_ 0 0 0 ENSG00000147166|ENST00000373829|ITGB1BP2 ENSG00000147166|ENST00000373829|ITGB1BP2 ENSG00000147166|ENST00000373829|ITGB1BP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.034912109375 3 318.118183 951.33272 -0.23221 -7.3871E-05 0.39005 0.00012408 0.15784 5.0212E-05 318.1182699342441 43.426 0.27728 43.426 43.19 43.467 0 10 7 2 0 0 0 0.8825 1 8112 8112 1.0715 0.67075 1 296160 32841 4689 21998 22013 32434 32434 -0.1448928151086193 PDSDERPL 8 Unmodified _PDSDERPL_ 0 0 0 REV__ENST00000568506.1_1_16:30194950-30195564:-|nuORF REV__ENST00000568506.1_1_16:30194950-30195564:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25018310546875 2 464.722164 927.429775 0.43598 0.00020261 0.65345 0.00030367 1.0894 0.00050628 464.7256224199855 45.155 0.8118 45.155 44.742 45.554 0 67 22 4 0 0 0 0.66265 1 8521 8521 18.135 0 1 4980300 + 32842 23144 21999 22014 32435 32435 -0.0368427275857357 PDSDPKLQ 8 Unmodified _PDSDPKLQ_ 0 0 0 nc|ENSG00000161180|Q8IYX3-3|CCDC116 nc|ENSG00000161180|Q8IYX3-3|CCDC116 nc|ENSG00000161180|Q8IYX3-3|CCDC116 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.28289794921875 2 450.227082 898.439611 -0.31246 -0.00014068 0.34289 0.00015438 0.030428 1.37E-05 450.227122821744 52.712 0.89452 49.828 49.591 50.486 -2.8837 37 25 2 0 0 0 0.96284 1 9996 9996 8.5933 0 1 1680500 32843 12409 22000 22015 32436 32436 -0.01367084753189829 PDSDPKLQ 8 Unmodified _PDSDPKLQ_ 0 0 0 nc|ENSG00000161180|Q8IYX3-3|CCDC116 nc|ENSG00000161180|Q8IYX3-3|CCDC116 nc|ENSG00000161180|Q8IYX3-3|CCDC116 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 450.227082 898.439611 0.003708 1.6694E-06 -0.25024 -0.00011267 -0.24654 -0.000111 450.22676424657277 52.935 0.98705 49.848 49.514 50.501 -3.0876 0.0051574 -0.00034415 NaN 8.5933 39 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1190700 32844 12409 22000 22015 -0.01367084753189829 PDSDPKLQ 8 Unmodified _PDSDPKLQ_ 0 0 0 nc|ENSG00000161180|Q8IYX3-3|CCDC116 nc|ENSG00000161180|Q8IYX3-3|CCDC116 nc|ENSG00000161180|Q8IYX3-3|CCDC116 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 450.227082 898.439611 -0.11728 -5.2805E-05 0.084923 3.8234E-05 -0.032362 -1.457E-05 450.22704817111145 52.947 0.95874 49.852 49.62 50.579 -3.0954 0.0093708 -4.2347E-05 NaN 8.5933 37 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1103500 32845 12409 22000 22015 -0.01367084753189829 PDSEEEDDED 10 Unmodified _PDSEEEDDED_ 0 0 0 nc|ENSG00000143401|Q9BTT0-3|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;ENSG00000143401|ENST00000583931|ANP32E nc|ENSG00000143401|Q9BTT0-3|ANP32E nc|ENSG00000143401|Q9BTT0-3|ANP32E MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2908935546875 3 393.798444 1178.3735 0.2064 8.128E-05 1.4575 0.00057396 1.6639 0.00065524 394.13230721430506 44.154 0.23474 44.154 43.987 44.222 0 11 6 2 0 0 0 0.91149 1 8245 8245 0.13989 0 1 668350 32846 4483 22001 22016 32437 32437 -0.20855034967235042 PDSGPIVC 8 Unmodified _PDSGPIVC_ 0 0 0 REV__ENSG00000170890|ENST00000308366|PLA2G1B REV__ENSG00000170890|ENST00000308366|PLA2G1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 394.18499755859375 2 394.186371 786.35819 NaN NaN NaN NaN NaN NaN NaN 26.538 1 24.903 24.403 25.403 -1.6347 0 0 0 0.22934 1 4408 4408 0.063987 0 1 + 32847 18188 22002 22017 32438 32438 -0.04353483716795381 PDSIHHVCCFC 11 Unmodified _PDSIHHVCCFC_ 0 0 0 REV__ENST00000222120.7_1_19:11435272-11435518:-|nuORF REV__ENST00000222120.7_1_19:11435272-11435518:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7508544921875 2 630.751561 1259.48857 NaN NaN NaN NaN NaN NaN NaN 93.193 1 93.193 92.693 93.693 0 0 0 0 0.23379 1 18230 18230 5.2969 1.3525 1 + 32848 20031 22003 22018 32439 32439 -0.13079579051759538 PDSQMREHMN 10 Unmodified _PDSQMREHMN_ 0 0 0 APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7593383789062 2 622.760972 1243.50739 NaN NaN NaN NaN NaN NaN NaN 46.498 1 46.498 45.998 46.998 0 0 0 0 0.22588 1 8757 8757 13.042 0 1 32849 184 22004 22019 32440 32440 -0.10462326156334711 PDSQPLSRNQ 10 Unmodified _PDSQPLSRNQ_ 0 0 0 REV__nc|ENSG00000167699|Q9HC38-3|GLOD4 REV__nc|ENSG00000167699|Q9HC38-3|GLOD4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.209716796875 3 381.191393 1140.55235 NaN NaN NaN NaN NaN NaN NaN 72.582 1 72.582 72.082 73.082 0 0 0 0 0.22588 1 14077 14077 3.5871 0.85186 1 + 32850 17957 22005 22020 32441 32441 -0.012304360271400583 PDTCRSDHIV 10 Unmodified _PDTCRSDHIV_ 0 0 0 nc|ENSG00000103723|Q13367-2|AP3B2;ENST00000537735.1_1_15:83328314-83331023:-|nuORF;ENST00000543938.5_1_15:83328314-83349061:-|nuORF;nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2 nc|ENSG00000103723|Q13367-2|AP3B2 nc|ENSG00000103723|Q13367-2|AP3B2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21636962890625 3 381.513479 1141.51861 -0.10027 -3.8254E-05 1.2967 0.00049472 1.1965 0.00045647 381.51406462501274 23.792 0.31114 23.792 23.552 23.863 0 10 8 2 0 0 0 0.91149 1 4061 4061 5.7834 3.0482 1 226540 32851 2205 22006 22021 32442 32442 -0.04649180790556784 PDTESPVPV 9 Unmodified _PDTESPVPV_ 0 0 0 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.144775390625 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 105.47 1 101.09 100.59 101.59 -4.3764 0 0 0 0.23508 1 20219 20219 2.7352 0.23671 1 32852 522 22007 22022 32443 32443 -0.017222179559894357 PDTFEKPK 8 Unmodified _PDTFEKPK_ 0 0 0 REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|51|3|sense REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|51|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2545471191406 2 481.2531 960.491647 -0.1499 -7.2139E-05 -1.077 -0.00051832 -1.2269 -0.00059046 481.2530802264014 25.602 0.65879 23.748 23.638 24.297 -1.8534 27 18 3 0 0 0 0.35341 1 4260 4260 34.402 3.7652 1 696730 + 32853 23781 22008 22023 32444 32444 0.00982078660570096 PDTFEKPK 8 Unmodified _PDTFEKPK_ 0 0 0 REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|51|3|sense REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|51|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2535095214844 2 481.2531 960.491647 -0.16247 -7.8188E-05 0.7202 0.0003466 0.55773 0.00026841 481.2533904723 83.001 1.4887 79.303 78.481 79.97 -3.6985 161 42 5 0 0 0 0.56049 1 15710 15710 24.674 2.9272 1 61137000 + 32854 23781 22008 22023 32445 32445 0.00982078660570096 PDTIPALPVR 10 Unmodified _PDTIPALPVR_ 0 0 0 REV__ENST00000459969.5_1_2:10262865-10264033:+|nuORF REV__ENST00000459969.5_1_2:10262865-10264033:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21331787109375 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 26.951 1 26.951 26.451 27.451 0 0 0 0 0.22588 1 4737 4737 1.7423 0.52744 1 + 32855 18256 22009 22024 32446 32446 0.0825400488570267 PDTKEMLK 8 Unmodified _PDTKEMLK_ 0 0 0 ENST00000461663.1_1_5:116052154-116052343:+|nuORF;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17 ENST00000461663.1_1_5:116052154-116052343:+|nuORF ENST00000461663.1_1_5:116052154-116052343:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.251953125 2 481.254785 960.495018 0.028953 1.3934E-05 -2.5789 -0.0012411 -2.55 -0.0012272 481.25356262062274 24.184 0.64841 24.184 23.827 24.475 0 29 18 2 0 0 0 0.036978 2 4143 4143;4167 93.166 22.834 1 1849200 32856 6812 22010 22025 32447;32448 32447 0.013190054429287557 PDTKEMLK 8 Unmodified _PDTKEMLK_ 0 0 0 ENST00000461663.1_1_5:116052154-116052343:+|nuORF;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17 ENST00000461663.1_1_5:116052154-116052343:+|nuORF ENST00000461663.1_1_5:116052154-116052343:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.15216064453125 3 321.172282 960.495018 0.91435 0.00029366 -1.133 -0.0003639 -0.2187 -7.0241E-05 321.1718828700867 25.674 0.45162 24.026 23.824 24.275 -1.6482 20 12 2 0 0 0 8448 1 4527 4527 23.79 8.9515 1 1545100 32857 6812 22010 22025 32449 32449 0.013190054429287557 PDTKEMLK 8 Unmodified _PDTKEMLK_ 0 0 0 ENST00000461663.1_1_5:116052154-116052343:+|nuORF;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17 ENST00000461663.1_1_5:116052154-116052343:+|nuORF ENST00000461663.1_1_5:116052154-116052343:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 321.172282 960.495018 0.094541 3.0364E-05 -0.56508 -0.00018149 -0.47054 -0.00015112 321.1720640606656 25.622 0.47826 23.988 23.752 24.23 -1.6347 -0.019092 0.00030128 NaN 23.79 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 967830 32858 6812 22010 22025 0.013190054429287557 PDTKLKGPK 9 Unmodified _PDTKLKGPK_ 0 0 0 AHNAK|p.A4702T|1|0.4|ENSG00000124942|chr11:62520313-62520313|C/T|missense_variant AHNAK|p.A4702T|1|0.4|ENSG00000124942|chr11:62520313-62520313|C/T|missense_variant AHNAK|p.A4702T|1|0.4|ENSG00000124942|chr11:62520313-62520313|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 328.0109558105469 3 328.53432 982.581131 -0.38481 -0.00012642 0.4951 0.00016266 0.1103 3.6236E-05 328.5344183060611 25.767 0.28114 25.767 25.669 25.95 0 10 7 2 0 0 0 0.88313 1 4468 4468 0.18151 0 1 1830600 32859 103 22011 22026 32450 32450 0.08914333339942004 PDTKPYGAL 9 Unmodified _PDTKPYGAL_ 0 0 0 KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;KMT2D|p.G5182Afs*61|1|0.57|ENSG00000167548|chr12:49026421-49026421|C/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2535705566406 2 481.2531 960.491647 0.11138 5.3603E-05 -1.4588 -0.00070205 -1.3474 -0.00064845 481.252737571751 25.423 0.61759 23.888 23.68 24.297 -1.5342 28 17 3 0 0 0 0.19311 1 4207 4207 37.974 3.5723 1 918800 32860 5817 22012 22027 32451 32451 0.00982078660570096 PDTLFFRW 8 Unmodified _PDTLFFRW_ 0 0 0 REV__ENST00000556431.1_1_14:105222603-105223098:+|nuORF REV__ENST00000556431.1_1_14:105222603-105223098:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2776489257812 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 174.77 1 169.98 169.48 170.48 -4.7898 0 0 0 0.23538 1 35714 35714 0.62683 0.49901 1 + 32861 22994 22013 22028 32452 32452 0.0022177765142714634 PDTLGLLLV 9 Unmodified _PDTLGLLLV_ 0 0 0 REV__ENST00000398101.7_1_3:127454893-127455007:-|nuORF REV__ENST00000398101.7_1_3:127454893-127455007:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1744079589844 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 60.881 1 60.881 60.381 61.381 0 0 0 0 0.23508 1 11679 11679 1.0715 0 1 + 32862 21321 22014 22029 32453 32453 0.09188412734158646 PDTLGLLLV 9 Unmodified _PDTLGLLLV_ 0 0 0 REV__ENST00000398101.7_1_3:127454893-127455007:-|nuORF REV__ENST00000398101.7_1_3:127454893-127455007:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.2114562988281 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 88.615 1 88.615 88.115 89.115 0 0 0 0 0.23508 1 17296 17296 1.0715 0 1 + 32863 21321 22014 22029 32454 32454 0.09188412734158646 PDTQKFLRF 9 Unmodified _PDTQKFLRF_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3129272460938 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 177.98 1 173.19 172.69 173.69 -4.7898 0 0 0 0.23508 1 36409 36409 3.9444 0.3479 1 32864 1701 22015 22030 32455 32455 0.044211207429498245 PDTSGRRWREI 11 Unmodified _PDTSGRRWREI_ 0 0 0 ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1;NLRP1|p.K583Rfs*14|2|0.29|ENSG00000091592|chr17:5558948-5558948|T/-|frameshift_variant ENST00000571307.1_1_17:5433304-5487319:-|nuORF ENST00000571307.1_1_17:5433304-5487319:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2314758300781 3 458.240858 1371.70075 NaN NaN NaN NaN NaN NaN NaN 73.549 1 69.872 69.372 70.372 -3.6764 0 0 0 0.22632 1 13898 13898 0.094841 0 1 32865 1812 22016 22031 32456 32456 0.02976294946552116 PDTSWSPPA 9 Unmodified _PDTSWSPPA_ 0 0 0 IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant;ENSG00000112706|ENST00000369950|IMPG1 IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7239990234375 2 479.219257 956.423961 0.0016714 8.0097E-07 0.3672 0.00017597 0.36887 0.00017677 479.2192528769786 45.749 0.34426 42.909 42.724 43.068 -2.8409 17 9 2 0 0 0 0.72864 1 8651 8651 11.64 0 1 930240 32866 2707 22017 22032 32457 32457 -0.05599371270238862 PDVDVNLPK 9 Unmodified _PDVDVNLPK_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.A4215V|1|0.31|ENSG00000124942|chr11:62521773-62521773|G/A|missense_variant ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.0345153808594 3 332.850197 995.528761 -0.60323 -0.00020078 0.58395 0.00019437 -0.019277 -6.4165E-06 332.85035740496266 14.923 1.0355 13.747 13.277 14.313 -1.1753 64 29 3 0 0 0 0.87708 1 2047 2047 4.1895 0 1 1704600 32867 3339 22018 22033 32458 32458 0.03081750206331435 PDVFDVPQ 8 Unmodified _PDVFDVPQ_ 0 0 0 REV__nc|ENSG00000021826|P31327-3|CPS1 REV__nc|ENSG00000021826|P31327-3|CPS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24017333984375 2 458.724175 915.433798 NaN NaN NaN NaN NaN NaN NaN 153.68 1 148.41 147.91 148.91 -5.2669 0 0 0 0.21486 1 29792 29792 7.9102 2.6795 1 + 32868 13987 22019 22034 32459 32459 -0.027301832648504387 PDVGHLYK 8 Unmodified _PDVGHLYK_ 0 0 0 ENSG00000156453|ENST00000287008|PCDH1;nc|ENSG00000156453|Q08174|PCDH1 ENSG00000156453|ENST00000287008|PCDH1 ENSG00000156453|ENST00000287008|PCDH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1678771972656 3 310.167749 927.481417 NaN NaN NaN NaN NaN NaN NaN 40.751 1 38.261 37.761 38.761 -2.4896 0 0 0 0.21486 1 7301 7301 6.2058 2.2614 1 32869 5089 22020 22035 32460 32460 0.01477515725991907 PDVHRNGKY 9 Unmodified _PDVHRNGKY_ 0 0 0 nc|ENSG00000168491|Q8TBZ0-2|CCDC110;ENSG00000168491|ENST00000307588|CCDC110;CCDC110|p.V445*|1|0.29|ENSG00000168491|chr4:185459255-185459255|T/-|frameshift_variant;CCDC110|p.I511Nfs*3|1|0.22|ENSG00000168491|chr4:185459055-185459056|-/T|frameshift_variant;CCDC110|p.T592Hfs*5|1|0.4|ENSG00000168491|chr4:185458813-185458813|T/-|frameshift_variant;CCDC110|p.M707Nfs*9|1|0.48|ENSG00000168491|chr4:185458467-185458468|-/T|frameshift_variant;CCDC110|p.N755Mfs*18|1|0.24|ENSG00000168491|chr4:185458323-185458323|T/-|frameshift_variant nc|ENSG00000168491|Q8TBZ0-2|CCDC110 nc|ENSG00000168491|Q8TBZ0-2|CCDC110 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7825317382812 2 543.277972 1084.54139 -0.43025 -0.00023375 0.59588 0.00032373 0.16563 8.9985E-05 543.2782203061839 13.936 0.24747 12.822 12.663 12.911 -1.1142 10 6 3 0 0 0 0.7009 1 2041 2041 6.2058 2.2614 1 1279700 32870 5913 22021 22036 32461 32461 0.002502063892507067 PDVHRNGKY 9 Unmodified _PDVHRNGKY_ 0 0 0 nc|ENSG00000168491|Q8TBZ0-2|CCDC110;ENSG00000168491|ENST00000307588|CCDC110;CCDC110|p.V445*|1|0.29|ENSG00000168491|chr4:185459255-185459255|T/-|frameshift_variant;CCDC110|p.I511Nfs*3|1|0.22|ENSG00000168491|chr4:185459055-185459056|-/T|frameshift_variant;CCDC110|p.T592Hfs*5|1|0.4|ENSG00000168491|chr4:185458813-185458813|T/-|frameshift_variant;CCDC110|p.M707Nfs*9|1|0.48|ENSG00000168491|chr4:185458467-185458468|-/T|frameshift_variant;CCDC110|p.N755Mfs*18|1|0.24|ENSG00000168491|chr4:185458323-185458323|T/-|frameshift_variant nc|ENSG00000168491|Q8TBZ0-2|CCDC110 nc|ENSG00000168491|Q8TBZ0-2|CCDC110 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.277972 1084.54139 0.20292 0.00011024 -0.13988 -7.5992E-05 0.063039 3.4248E-05 543.2779505368104 13.183 0.27851 13.183 13.064 13.342 0 0.18082 -0.00032774 NaN 6.2058 15 7 4 NaN NaN NaN NaN 0 NaN NaN 0 2699800 32871 5913 22021 22036 0.002502063892507067 PDVMRPDPP 9 Unmodified _PDVMRPDPP_ 0 0 0 REV__THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|24|2|sense REV__THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|24|2|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 512.1621704101562 2 512.250034 1022.48552 NaN NaN NaN NaN NaN NaN NaN 119.21 1 114.71 114.21 115.21 -4.502 0 0 0 0.23508 1 23509 23509 12.532 0.89125 1 + 32872 24794 22022 22037 32462 32462 -0.02482762842601005 PDVMSSTPF 9 Unmodified _PDVMSSTPF_ 0 0 0 REV__ENSG00000101098|ENST00000372851|RIMS4 REV__ENSG00000101098|ENST00000372851|RIMS4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25897216796875 2 490.723318 979.432083 0.55445 0.00027208 2.7964 0.0013722 3.3508 0.0016443 490.7245748169048 30.601 0.31398 28.484 28.295 28.609 -2.1167 12 8 2 0 0 0 0.8319 1 5551 5551 7.9102 3.5809 1 289350 + 32873 14760 22023 22038 32463 32463 -0.058455603451079696 PDVNTNGFA 9 Unmodified _PDVNTNGFA_ 0 0 0 ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1463317871094 3 312.147013 933.41921 NaN NaN NaN NaN NaN NaN NaN 52.231 1 49.149 48.649 49.649 -3.0819 0 0 0 0.23508 1 9637 9637 2.7352 1.0826 1 32874 4139 22024 22039 32464 32464 -0.05016255412999726 PDVNTNGFA 9 Unmodified _PDVNTNGFA_ 0 0 0 ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1342468261719 3 312.147013 933.41921 NaN NaN NaN NaN NaN NaN NaN 76.64 1 73.006 72.506 73.506 -3.6337 0 0 0 0.23508 1 14592 14592 2.7352 1.0826 1 32875 4139 22024 22039 32465 32465 -0.05016255412999726 PDVSHLKLI 9 Unmodified _PDVSHLKLI_ 0 0 0 ENST00000528749.1_1_1:150934626-150935279:+|nuORF ENST00000528749.1_1_1:150934626-150935279:+|nuORF ENST00000528749.1_1_1:150934626-150935279:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 341.1861267089844 3 341.206203 1020.59678 NaN NaN NaN NaN NaN NaN NaN 85.454 1 81.545 81.045 82.045 -3.9093 0 0 0 0.23508 1 16253 16253 1.0715 0 1 32876 10941 22025 22040 32466 32466 0.08730619856999056 PDYLSNRGF 9 Unmodified _PDYLSNRGF_ 0 0 0 POLR3A|p.V689D|1|0.26|ENSG00000148606|chr10:78007710-78007710|A/T|missense_variant POLR3A|p.V689D|1|0.26|ENSG00000148606|chr10:78007710-78007710|A/T|missense_variant POLR3A|p.V689D|1|0.26|ENSG00000148606|chr10:78007710-78007710|A/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.0728759765625 3 356.841813 1067.50361 -0.24463 -8.7294E-05 0.19035 6.7925E-05 -0.054279 -1.9369E-05 356.84184289076086 32.613 0.35125 30.465 30.35 30.701 -2.1483 16 9 2 0 0 0 0.88054 1 5687 5687 0.86438 0 1 732620 32877 12813 22026 22041 32467 32467 -0.027443045962399992 PDYLSNRGF 9 Unmodified _PDYLSNRGF_ 0 0 0 POLR3A|p.V689D|1|0.26|ENSG00000148606|chr10:78007710-78007710|A/T|missense_variant POLR3A|p.V689D|1|0.26|ENSG00000148606|chr10:78007710-78007710|A/T|missense_variant POLR3A|p.V689D|1|0.26|ENSG00000148606|chr10:78007710-78007710|A/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 356.841813 1067.50361 -0.23347 -8.3313E-05 0.25727 9.1806E-05 0.023801 8.493E-06 356.8418314259818 30.468 0.42131 30.468 30.272 30.693 0 0.0047229 0.00024132 NaN 0.86438 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2826400 32878 12813 22026 22041 -0.027443045962399992 PDYLSNRGF 9 Unmodified _PDYLSNRGF_ 0 0 0 POLR3A|p.V689D|1|0.26|ENSG00000148606|chr10:78007710-78007710|A/T|missense_variant POLR3A|p.V689D|1|0.26|ENSG00000148606|chr10:78007710-78007710|A/T|missense_variant POLR3A|p.V689D|1|0.26|ENSG00000148606|chr10:78007710-78007710|A/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 356.841813 1067.50361 -0.15654 -5.5861E-05 0.1193 4.2571E-05 -0.037244 -1.329E-05 356.84181342783677 32.705 0.38652 30.475 30.294 30.68 -2.2305 0.011446 9.3614E-05 NaN 0.86438 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1142200 32879 12813 22026 22041 -0.027443045962399992 PDYLSNRGF 9 Unmodified _PDYLSNRGF_ 0 0 0 POLR3A|p.V689D|1|0.26|ENSG00000148606|chr10:78007710-78007710|A/T|missense_variant POLR3A|p.V689D|1|0.26|ENSG00000148606|chr10:78007710-78007710|A/T|missense_variant POLR3A|p.V689D|1|0.26|ENSG00000148606|chr10:78007710-78007710|A/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 356.841813 1067.50361 0.2559 9.1317E-05 -0.42505 -0.00015168 -0.16915 -6.0358E-05 356.8416879470263 32.576 0.51939 30.445 30.219 30.738 -2.1307 -0.017794 -0.00048913 NaN 0.86438 28 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2466500 32880 12813 22026 22041 -0.027443045962399992 PDYRRQESRT 10 Unmodified _PDYRRQESRT_ 0 0 0 nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN nc|ENSG00000130396|P55196-2|AFDN nc|ENSG00000130396|P55196-2|AFDN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2188720703125 3 436.553213 1306.63781 -0.085775 -3.7445E-05 3.6109 0.0015763 3.5251 0.0015389 436.55197684028116 23.5 0.52429 22.047 21.716 22.24 -1.4535 29 14 3 0 0 0 0.73195 2 3791 3791;3820 7.9454 1.1712 1 620000 32881 3607 22027 22042 32468;32469 32468 -0.0032427084149730945 PDYRRQESRT 10 Unmodified _PDYRRQESRT_ 0 0 0 nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN nc|ENSG00000130396|P55196-2|AFDN nc|ENSG00000130396|P55196-2|AFDN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2362060546875 3 436.553213 1306.63781 -0.52855 -0.00023074 0.50716 0.0002214 -0.021389 -9.3376E-06 436.55198560195697 23.874 0.59142 22.085 21.909 22.5 -1.7886 20 16 2 0 0 0 0.75212 1 3828 3828 5.0475 1.9753 1 255270 32882 3607 22027 22042 32470 32470 -0.0032427084149730945 PDYSDSTEVK 10 Unmodified _PDYSDSTEVK_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2181396484375 3 380.840026 1139.49825 -0.89898 -0.00034237 -0.44242 -0.00016849 -1.3414 -0.00051086 380.8399629542708 24.718 1.3438 22.864 22.155 23.499 -1.8534 59 38 2 0 0 0 0.90272 1 3929 3929 5.0475 4.0852 1 814490 32883 1369 22028 22043 32471 32471 -0.06592072969374385 PEAANCIR 8 Unmodified _PEAANCIR_ 0 0 0 nc|ENSG00000185483|Q01973-3|ROR1;ENSG00000185483|ENST00000371079|ROR1 nc|ENSG00000185483|Q01973-3|ROR1 nc|ENSG00000185483|Q01973-3|ROR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2157897949219 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 63.475 1 63.475 62.975 63.975 0 0 0 0 0.21486 1 12206 12206 8.5933 0.68312 1 32884 6995 22029 22044 32472 32472 -0.023875877026057424 PEAASNIQ 8 Unmodified _PEAASNIQ_ 0 0 0 TRIM32|p.K604Rfs*21|1|0.05|ENSG00000119401|chr9:116699550-116699551|-/GAGAA|frameshift_variant;ENSG00000119401|ENST00000450136|TRIM32 TRIM32|p.K604Rfs*21|1|0.05|ENSG00000119401|chr9:116699550-116699551|-/GAGAA|frameshift_variant TRIM32|p.K604Rfs*21|1|0.05|ENSG00000119401|chr9:116699550-116699551|-/GAGAA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2530212402344 2 415.20615 828.397747 0.03721 1.545E-05 0.75441 0.00031324 0.79162 0.00032869 415.20651120215956 25.139 0.62379 23.605 23.265 23.889 -1.5342 21 17 2 0 0 0 0.98792 1 4129 4129 2.3027 0 1 638460 32885 3074 22030 22045 32473 32473 -0.0233164044170735 PEAASNIQ 8 Unmodified _PEAASNIQ_ 0 0 0 TRIM32|p.K604Rfs*21|1|0.05|ENSG00000119401|chr9:116699550-116699551|-/GAGAA|frameshift_variant;ENSG00000119401|ENST00000450136|TRIM32 TRIM32|p.K604Rfs*21|1|0.05|ENSG00000119401|chr9:116699550-116699551|-/GAGAA|frameshift_variant TRIM32|p.K604Rfs*21|1|0.05|ENSG00000119401|chr9:116699550-116699551|-/GAGAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 415.20615 828.397747 0.078714 3.2682E-05 0.60168 0.00024982 0.6804 0.00028251 415.2062729529632 23.865 0.65231 23.865 23.514 24.167 0 0.16524 0.00024912 NaN 2.3027 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1502800 32886 3074 22030 22045 -0.0233164044170735 PEAASNIQ 8 Unmodified _PEAASNIQ_ 0 0 0 TRIM32|p.K604Rfs*21|1|0.05|ENSG00000119401|chr9:116699550-116699551|-/GAGAA|frameshift_variant;ENSG00000119401|ENST00000450136|TRIM32 TRIM32|p.K604Rfs*21|1|0.05|ENSG00000119401|chr9:116699550-116699551|-/GAGAA|frameshift_variant TRIM32|p.K604Rfs*21|1|0.05|ENSG00000119401|chr9:116699550-116699551|-/GAGAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 415.20615 828.397747 0.96077 0.00039892 -0.3272 -0.00013585 0.63357 0.00026306 415.2059998708839 25.278 0.73173 23.63 23.303 24.035 -1.6482 -0.070232 -0.00052224 NaN 2.3027 35 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1350900 32887 3074 22030 22045 -0.0233164044170735 PEAGFEERF 9 Unmodified _PEAGFEERF_ 0 0 0 REV__ENST00000589030.1_1_17:73759945-73761208:-|nuORF REV__ENST00000589030.1_1_17:73759945-73761208:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2767944335938 2 541.251089 1080.48762 0.37355 0.00020218 1.7004 0.00092034 2.0739 0.0011225 541.7536867698753 158.22 0.18105 153.42 153.37 153.55 -4.7952 5 4 2 0 0 0 0.79204 1 31467 31467 1.6526 1.1279 1 636200 + 32888 15125 22031 22046 32474 32474 -0.04940010833138331 PEAGFSSS 8 Unmodified _PEAGFSSS_ 0 0 0 REV__ENST00000538995.1_1_11:63449027-63481555:+|nuORF REV__ENST00000538995.1_1_11:63449027-63481555:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 783.3422241210938 1 781.336275 780.328998 0.44528 0.00034791 -0.57502 -0.00044929 -0.12974 -0.00010137 781.335605416819 48.921 0.73196 46.042 45.72 46.452 -2.8787 43 20 3 0 0 0 0.58432 1 9296 9296 23.148 9.6405 1 7074900 + 32889 16163 22032 22047 32475 32475 -0.06995304741417385 PEAGFSSS 8 Unmodified _PEAGFSSS_ 0 0 0 REV__ENST00000538995.1_1_11:63449027-63481555:+|nuORF REV__ENST00000538995.1_1_11:63449027-63481555:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 781.336275 780.328998 0.79331 0.00061985 -0.57714 -0.00045094 0.21618 0.00016891 781.3355627456642 45.914 0.69459 45.914 45.656 46.35 0 -0.088163 -0.0001815 NaN 23.148 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 5220700 + 32890 16163 22032 22047 -0.06995304741417385 PEAGFSSS 8 Unmodified _PEAGFSSS_ 0 0 0 REV__ENST00000538995.1_1_11:63449027-63481555:+|nuORF REV__ENST00000538995.1_1_11:63449027-63481555:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 781.336275 780.328998 0.44528 0.00034791 -0.57502 -0.00044929 -0.12974 -0.00010137 781.335605416819 48.921 0.73196 46.042 45.72 46.452 -2.8787 0.039167 -0.00017985 NaN 23.148 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 7074900 + 32891 16163 22032 22047 -0.06995304741417385 PEAGFSSS 8 Unmodified _PEAGFSSS_ 0 0 0 REV__ENST00000538995.1_1_11:63449027-63481555:+|nuORF REV__ENST00000538995.1_1_11:63449027-63481555:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 781.336275 780.328998 0.25834 0.00020185 -0.28712 -0.00022434 -0.028778 -2.2485E-05 781.3359780596479 49.051 0.68862 46.052 45.791 46.479 -2.999 0.048988 4.5104E-05 NaN 23.148 39 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6106300 + 32892 16163 22032 22047 -0.06995304741417385 PEAGFSSS 8 Unmodified _PEAGFSSS_ 0 0 0 REV__ENST00000538995.1_1_11:63449027-63481555:+|nuORF REV__ENST00000538995.1_1_11:63449027-63481555:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 781.336275 780.328998 0.1094 8.5482E-05 0.018145 1.4178E-05 0.12755 9.9659E-05 781.3359039024638 49.009 0.76243 46.003 45.765 46.527 -3.0068 7.7927E-06 0.00028362 NaN 23.148 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 4515900 + 32893 16163 22032 22047 -0.06995304741417385 PEAGLALAAAA 11 Unmodified _PEAGLALAAAA_ 0 0 0 REV__ENST00000551915.5_1_12:83081037-83081439:+|nuORF REV__ENST00000551915.5_1_12:83081037-83081439:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73065185546875 2 477.766374 953.518196 0.28598 0.00013663 -0.093508 -4.4675E-05 0.19247 9.1958E-05 477.76626336578846 119.69 0.80742 115.17 114.8 115.61 -4.5221 44 22 3 0 0 0 0.68373 1 23582 23582 16.149 0 1 4855500 + 32894 22939 22033 22048 32476 32476 0.03957767551878533 PEAHSNLYI 9 Unmodified _PEAHSNLYI_ 0 0 0 nc|ENSG00000168067|Q12851-2|MAP4K2;ENSG00000168067|ENST00000294066|MAP4K2 nc|ENSG00000168067|Q12851-2|MAP4K2 nc|ENSG00000168067|Q12851-2|MAP4K2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2619018554688 2 522.261456 1042.50836 -0.043505 -2.2721E-05 0.061394 3.2064E-05 0.01789 9.343E-06 522.2614723066043 83.044 0.75711 79.345 78.933 79.69 -3.6985 40 21 2 0 0 0 0.36931 1 15796 15796 27.629 10.687 1 3933500 32895 5878 22034 22049 32477 32477 -0.011194204534831442 PEALRLPKKPT 11 Unmodified _PEALRLPKKPT_ 0 0 0 REV__ENST00000318003.11_1_19:14041204-14041669:+|nuORF REV__ENST00000318003.11_1_19:14041204-14041669:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 625.36669921875 2 625.38498 1248.75541 NaN NaN NaN NaN NaN NaN NaN 171.62 1 166.7 166.2 167.2 -4.9149 0 0 0 0.23379 1 34002 34002 5.2969 2.0156 1 + 32896 20531 22035 22050 32478 32478 0.14097913765272096 PEAMCSDS 8 Unmodified _PEAMCSDS_ 0 0 0 nc|ENSG00000170011|Q8NFW9-5|MYRIP;nc|ENSG00000170011|Q8NFW9-4|MYRIP;nc|ENSG00000170011|Q8NFW9-3|MYRIP;nc|ENSG00000170011|Q8NFW9-6|MYRIP;nc|ENSG00000170011|Q8NFW9-2|MYRIP;ENSG00000170011|ENST00000302541|MYRIP nc|ENSG00000170011|Q8NFW9-5|MYRIP nc|ENSG00000170011|Q8NFW9-5|MYRIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 420.3190612792969 2 420.149129 838.283704 -0.1347 -5.6594E-05 0.53315 0.000224 0.39845 0.00016741 420.15123386107234 64.698 0.69353 61.7 61.36 62.054 -2.9975 54 19 4 0 0 0 1.0273 1 12581 12581 2.3027 2.3027 1 2744800 32897 6031 22036 22051 32479 32479 -0.14190614590472705 PEAMCSDS 8 Unmodified _PEAMCSDS_ 0 0 0 nc|ENSG00000170011|Q8NFW9-5|MYRIP;nc|ENSG00000170011|Q8NFW9-4|MYRIP;nc|ENSG00000170011|Q8NFW9-3|MYRIP;nc|ENSG00000170011|Q8NFW9-6|MYRIP;nc|ENSG00000170011|Q8NFW9-2|MYRIP;ENSG00000170011|ENST00000302541|MYRIP nc|ENSG00000170011|Q8NFW9-5|MYRIP nc|ENSG00000170011|Q8NFW9-5|MYRIP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 420.149129 838.283704 0.19883 8.354E-05 0.81581 0.00034276 1.0146 0.0004263 420.15117794507876 65.299 0.73493 61.841 61.404 62.139 -3.4581 0.070562 0.00012658 NaN 2.3027 61 20 4 NaN NaN NaN NaN 0 NaN NaN 0 5084400 32898 6031 22036 22051 -0.14190614590472705 PEAQQHDYH 9 Unmodified _PEAQQHDYH_ 0 0 0 ENST00000198536.6_2_7:99972015-99987568:+|nuORF ENST00000198536.6_2_7:99972015-99987568:+|nuORF ENST00000198536.6_2_7:99972015-99987568:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2204895019531 3 375.496705 1123.46829 0.61798 0.00023205 -1.2795 -0.00048045 -0.66151 -0.00024839 375.49634065062975 27.979 0.35543 26.023 25.803 26.158 -1.9561 13 9 2 0 0 0 0.87262 1 4996 4996 8.7454 5.4258 1 435280 32899 8086 22037 22052 32480 32480 -0.08850967124044473 PEASDPKS 8 Unmodified _PEASDPKS_ 0 0 0 REV__ENSG00000105976|ENST00000397752|MET REV__ENSG00000105976|ENST00000397752|MET MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 831.3928833007812 1 830.389039 829.381762 0.25107 0.00020849 0.33451 0.00027778 0.58558 0.00048626 830.3892189375464 41.738 1.465 39.103 38.677 40.142 -2.6348 91 41 3 0 0 0 0.66265 1 7950 7950 18.135 0 1 10511000 + 32900 15025 22038 22053 32481 32481 -0.03975346678612368 PECCCCGEDEE 11 Unmodified _PECCCCGEDEE_ 0 0 0 REV__ENSG00000197136|ENST00000355703|PCNX3 REV__ENSG00000197136|ENST00000355703|PCNX3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 406.1138610839844 3 406.113558 1215.31885 NaN NaN NaN NaN NaN NaN NaN 169.21 1 164.33 163.83 164.83 -4.873 0 0 0 0.23698 1 33407 33407 0 0 1 + 32901 19310 22039 22054 32482 32482 -0.28020107907150305 PECCCFGEDEE 11 Unmodified _PECCCFGEDEE_ 0 0 0 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.751953125 2 630.696314 1259.37808 NaN NaN NaN NaN NaN NaN NaN 170.95 1 170.95 170.45 171.45 0 0 0 0 0.23698 1 35182 35182 1.3295 1.0225 1 + 32902 14735 22040 22055 32483 32483 -0.24123888621306833 PECCCFGEDEE 11 Unmodified _PECCCFGEDEE_ 0 0 0 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.76513671875 2 630.696314 1259.37808 NaN NaN NaN NaN NaN NaN NaN 169.31 1 164.38 163.88 164.88 -4.9295 0 0 0 0.23698 1 33425 33425 1.1933 0.735 1 + 32903 14735 22040 22055 32484 32484 -0.24123888621306833 PECCHCCC 8 Unmodified _PECCHCCC_ 0 0 0 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.2168273925781 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 53.187 1 53.187 52.687 53.687 0 0 0 0 0.23749 1 10124 10124 0.0082765 0 1 + 32904 19570 22041 22056 32485 32485 -0.24150106180763942 PECCHCCC 8 Unmodified _PECCHCCC_ 0 0 0 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.1134033203125 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 152.06 1 152.06 151.56 152.56 0 0 0 0 0.21486 1 30457 30457 0.69038 0.69038 1 + 32905 19570 22041 22056 32486 32486 -0.24150106180763942 PECCHCCC 8 Unmodified _PECCHCCC_ 0 0 0 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.121826171875 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 28.121 1 26.165 25.665 26.665 -1.9561 0 0 0 0.21486 1 5020 5020 0.69038 0.69038 1 + 32906 19570 22041 22056 32487 32487 -0.24150106180763942 PECCHCCC 8 Unmodified _PECCHCCC_ 0 0 0 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.35430908203125 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 28.212 1 26.256 25.756 26.756 -1.9561 0 0 0 0.21486 1 5039 5039 0.69038 0.69038 1 + 32907 19570 22041 22056 32488 32488 -0.24150106180763942 PECCHCCC 8 Unmodified _PECCHCCC_ 0 0 0 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.38531494140625 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 28.249 1 26.293 25.793 26.793 -1.9561 0 0 0 0.21486 1 5047 5047 0.69038 0.69038 1 + 32908 19570 22041 22056 32489 32489 -0.24150106180763942 PECCHCCC 8 Unmodified _PECCHCCC_ 0 0 0 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.3535461425781 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 32.987 1 30.757 30.257 31.257 -2.2305 0 0 0 0.21486 1 6023 6023 0.69038 0.69038 1 + 32909 19570 22041 22056 32490 32490 -0.24150106180763942 PECCHCCC 8 Unmodified _PECCHCCC_ 0 0 0 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.1138916015625 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 72.099 1 68.788 68.288 69.288 -3.3107 0 0 0 0.21486 1 14049 14049 0.69038 0.69038 1 + 32910 19570 22041 22056 32491 32491 -0.24150106180763942 PECCHCCC 8 Unmodified _PECCHCCC_ 0 0 0 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.3834228515625 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 56.165 1 52.976 52.476 53.476 -3.1895 0 0 0 0.21486 1 10403 10403 2.5775 2.5775 1 + 32911 19570 22041 22056 32492 32492 -0.24150106180763942 PECCHCCC 8 Unmodified _PECCHCCC_ 0 0 0 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.1221923828125 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 136.57 1 131.74 131.24 132.24 -4.8307 0 0 0 0.21486 1 26301 26301 0.69038 0.69038 1 + 32912 19570 22041 22056 32493 32493 -0.24150106180763942 PECCHCCC 8 Unmodified _PECCHCCC_ 0 0 0 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.113525390625 2 449.112654 896.210756 NaN NaN NaN NaN NaN NaN NaN 161.76 1 156.57 156.07 157.07 -5.1878 0 0 0 0.21486 1 31397 31397 0.69038 0.69038 1 + 32913 19570 22041 22056 32494 32494 -0.24150106180763942 PECLQRAV 8 Unmodified _PECLQRAV_ 0 0 0 ENSG00000136247|ENST00000335965|ZDHHC4;ZDHHC4|p.F115Sfs*3|1|0.37|ENSG00000136247|chr7:6582218-6582218|T/-|frameshift_variant;ZDHHC4|p.T116Hfs*16|1|0.27|ENSG00000136247|chr7:6582217-6582218|-/T|frameshift_variant;ENST00000493944.5_1_7:6618325-6621932:+|nuORF;ENST00000474097.5_1_7:6620192-6623202:+|nuORF ENSG00000136247|ENST00000335965|ZDHHC4 ENSG00000136247|ENST00000335965|ZDHHC4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2942810058594 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 80.267 1 76.591 76.091 77.091 -3.676 0 0 0 0.22847 1 15302 15302 10.074 9.8225 1 32914 3997 22042 22057 32495 32495 0.003732718485366604 PECLTPYFL 9 Unmodified _PECLTPYFL_ 0 0 0 REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7 REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2837524414062 2 541.764986 1081.51542 NaN NaN NaN NaN NaN NaN NaN 172.05 1 167.15 166.65 167.65 -4.8977 0 0 0 0.23508 1 34109 34109 7.9102 0 1 + 32915 19845 22043 22058 32496 32496 -0.022078238972653708 PECPADRGA 9 Unmodified _PECPADRGA_ 0 0 0 ENST00000307741.10_1_19:2785482-2790545:+|nuORF ENST00000307741.10_1_19:2785482-2790545:+|nuORF ENST00000307741.10_1_19:2785482-2790545:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2290954589844 2 458.203084 914.391615 NaN NaN NaN NaN NaN NaN NaN 73.176 1 73.176 72.676 73.676 0 0 0 0 0.19669 1 14201 14201 1.2148 0.588 1 32916 8616 22044 22059 32497 32497 -0.06900481944876447 PECWFMHCC 9 Unmodified _PECWFMHCC_ 0 0 0 REV__ENST00000526240.5_1_11:6416766-6417497:-|nuORF REV__ENST00000526240.5_1_11:6416766-6417497:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 578.408203125 2 578.197576 1154.3806 NaN NaN NaN NaN NaN NaN NaN 171.81 1 171.81 171.31 172.31 0 0 0 0 0.23508 1 35427 35427 2.0598 0 1 + 32917 17838 22045 22060 32498 32498 -0.1904166690665079 PEDEDDDDDD 10 Unmodified _PEDEDDDDDD_ 0 0 0 REV__ENSG00000101331|ENST00000452892|CCM2L REV__ENSG00000101331|ENST00000452892|CCM2L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.275146484375 2 590.175834 1178.33712 NaN NaN NaN NaN NaN NaN NaN 148.76 1 143.7 143.2 144.2 -5.0595 0 0 0 0.22588 1 28817 28817 0.40072 0.050084 1 + 32918 14778 22046 22061 32499 32499 -0.24491911863924543 PEDEVGPA 8 Unmodified _PEDEVGPA_ 0 0 0 REV__ENST00000459969.5_1_2:10262865-10264033:+|nuORF REV__ENST00000459969.5_1_2:10262865-10264033:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 407.3286437988281 2 407.184883 812.355213 0.062753 2.5552E-05 -2.9084 -0.0011842 -2.8456 -0.0011587 407.18457979517365 177.29 0.62215 172.39 172.23 172.85 -4.9008 30 17 3 0 0 0 1.028 1 35431 35431 0.79363 0 1 3079100 + 32919 18256 22047 22062 32500 32500 -0.05847035569945547 PEDEVGPA 8 Unmodified _PEDEVGPA_ 0 0 0 REV__ENST00000459969.5_1_2:10262865-10264033:+|nuORF REV__ENST00000459969.5_1_2:10262865-10264033:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 407.184883 812.355213 0.17398 7.0842E-05 -2.1535 -0.00087689 -1.9796 -0.00080605 407.1840761187565 177.35 0.70769 172.48 172.25 172.95 -4.8686 0.04634 0.00014451 NaN 0.79363 26 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1553800 + 32920 18256 22047 22062 -0.05847035569945547 PEDLEETVFT 10 Unmodified _PEDLEETVFT_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENST00000483900.1_1_1:247015289-247040365:-|nuORF;ENST00000420969.1_1_2:162360026-162361742:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.27685546875 2 590.274426 1178.5343 NaN NaN NaN NaN NaN NaN NaN 173.26 1 168.38 167.88 168.88 -4.881 0 0 0 0.22588 1 34433 34433 6.2058 0.47393 1 32921 4962 22048 22063 32501 32501 -0.047826157925328516 PEDSDDDDDE 10 Unmodified _PEDSDDDDDE_ 0 0 0 REV__ENSG00000188613|ENST00000425699|NANOS1 REV__ENSG00000188613|ENST00000425699|NANOS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3218383789062 2 576.178377 1150.3422 NaN NaN NaN NaN NaN NaN NaN 173.02 1 168.12 167.62 168.62 -4.8977 0 0 0 0.22588 1 34338 34338 1.4819 1.1749 1 + 32922 19159 22049 22064 32502 32502 -0.2269560800129966 PEDTYWNRY 9 Unmodified _PEDTYWNRY_ 0 0 0 REV__nc|ENSG00000154645|Q9H9P2-2|CHODL REV__nc|ENSG00000154645|Q9H9P2-2|CHODL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.754150390625 2 622.272552 1242.53055 0.33413 0.00020792 -0.90043 -0.00056032 -0.5663 -0.0003524 622.7743040620674 143.51 0.17741 138.48 138.38 138.56 -5.0261 5 4 2 0 0 0 0.87258 1 27669 27669 4.3292 0.38484 1 1321600 + 32923 17188 22050 22065 32503 32503 -0.08101240775704355 PEDWDEDMD 9 Unmodified _PEDWDEDMD_ 0 0 0 CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3199462890625 2 576.195319 1150.37608 NaN NaN NaN NaN NaN NaN NaN 172.91 1 168.12 167.62 168.62 -4.7898 0 0 0 0.19624 1 35247 35247 0 0 1 32924 380 22051 22066 32504 32504 -0.19308858043268629 PEDWDEDMD 9 Unmodified _PEDWDEDMD_ 0 0 0 CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3199462890625 2 576.195319 1150.37608 NaN NaN NaN NaN NaN NaN NaN 172.93 1 168.14 167.64 168.64 -4.7898 0 0 0 0.23508 1 35250 35250 2.0598 0.21551 1 32925 380 22051 22066 32505 32505 -0.19308858043268629 PEECDGGH 8 Unmodified _PEECDGGH_ 0 0 0 ENST00000487017.5_1_3:48609337-48621784:-|nuORF ENST00000487017.5_1_3:48609337-48621784:-|nuORF ENST00000487017.5_1_3:48609337-48621784:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.404296875 1 843.293758 842.286482 0.68706 0.00057939 -0.12595 -0.00010621 0.56111 0.00047318 843.2975774818392 173.09 0.20546 168.21 168.07 168.27 -4.881 6 5 2 0 0 0 0.83982 1 34359 34359 2.5775 0 1 7725300 32926 10462 22052 22067 32506 32506 -0.14097023141300724 PEEKPKVFI 9 Unmodified _PEEKPKVFI_ 0 0 0 nc|ENSG00000172548|Q0D2K0-2|NIPAL4;ENSG00000172548|ENST00000311946|NIPAL4 nc|ENSG00000172548|Q0D2K0-2|NIPAL4 nc|ENSG00000172548|Q0D2K0-2|NIPAL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7929077148438 2 543.813325 1085.6121 NaN NaN NaN NaN NaN NaN NaN 129.16 1 129.16 128.66 129.66 0 0 0 0 0.23508 1 25512 25512 6.7232 0 1 32927 6231 22053 22068 32507 32507 0.07271486654190085 PEEKRQAA 8 Unmodified _PEEKRQAA_ 0 0 0 REV__ENSG00000224470|ENST00000427980|ATXN1L REV__ENSG00000224470|ENST00000427980|ATXN1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651306152344 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 74.066 1 74.066 73.566 74.566 0 0 0 0 0.2386 1 14375 14375 0.62683 0 1 + 32928 19720 22054 22069 32508 32508 0.010754262322734576 PEELERASL 9 Unmodified _PEELERASL_ 0 0 0 ENSG00000049247|ENST00000361696|UTS2;nc|ENSG00000049247|O95399-2|UTS2 ENSG00000049247|ENST00000361696|UTS2 ENSG00000049247|ENST00000361696|UTS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.271728515625 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 86.392 1 82.664 82.164 83.164 -3.727 0 0 0 0.22251 1 16887 16887 16.942 3.8998 1 32929 1237 22055 22070 32509 32509 0.009925448553985916 PEELERASL 9 Unmodified _PEELERASL_ 0 0 0 ENSG00000049247|ENST00000361696|UTS2;nc|ENSG00000049247|O95399-2|UTS2 ENSG00000049247|ENST00000361696|UTS2 ENSG00000049247|ENST00000361696|UTS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2719116210938 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 86.388 1 82.659 82.159 83.159 -3.7289 0 0 0 0.22251 1 16518 16518 16.942 0 1 32930 1237 22055 22070 32510 32510 0.009925448553985916 PEEPHFVLN 9 Unmodified _PEEPHFVLN_ 0 0 0 REV__nc|ENSG00000111271|Q6JQN1-3|ACAD10 REV__nc|ENSG00000111271|Q6JQN1-3|ACAD10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2708740234375 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 136.42 1 131.59 131.09 132.09 -4.8307 0 0 0 0.18705 1 26268 26268 25.399 4.9457 1 + 32931 15238 22056 22071 32511 32511 -0.01303133936426093 PEEQECCCC 9 Unmodified _PEEQECCCC_ 0 0 0 REV__ENSG00000134780|ENST00000257215|DAGLA REV__ENSG00000134780|ENST00000257215|DAGLA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2714233398438 2 522.150488 1042.28642 NaN NaN NaN NaN NaN NaN NaN 123.4 1 118.81 118.31 119.31 -4.5926 0 0 0 0.19622 1 23756 23756 0.96228 0.65524 1 + 32932 16229 22057 22072 32512 32512 -0.2330285051948522 PEERAPLEPY 10 Unmodified _PEERAPLEPY_ 0 0 0 REV__nc|ENSG00000047849|P27816-3|MAP4 REV__nc|ENSG00000047849|P27816-3|MAP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3010864257812 2 600.798403 1199.58225 0.38442 0.00023096 -0.23288 -0.00013991 0.15154 9.1045E-05 600.7982856581106 124.24 0.73164 124.24 123.81 124.54 0 70 20 4 0 0 0 0.61964 1 24522 24522 18.146 3.3081 1 22731000 + 32933 23935 22058 22073 32513 32513 -0.009554970818271613 PEESSRGVYWV 11 Unmodified _PEESSRGVYWV_ 0 0 0 REV__ENST00000530758.1_1_3:10168112-10168214:+|nuORF REV__ENST00000530758.1_1_3:10168112-10168214:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.236083984375 3 436.878815 1307.61462 0.31416 0.00013725 3.162 0.0013814 3.4762 0.0015187 437.2153074315754 90.447 0.52244 86.403 86.128 86.651 -4.0443 19 14 2 0 0 0 0.7859 1 17220 17220 5.5233 1.647 1 439870 + 32934 22758 22059 22074 32514 32514 -0.026887096788186682 PEETLVEV 8 Unmodified _PEETLVEV_ 0 0 0 REV__nc|ENSG00000141098|Q3B7J2-2|GFOD2 REV__nc|ENSG00000141098|Q3B7J2-2|GFOD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23828125 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 45.754 1 45.754 45.254 46.254 0 0 0 0 0.17894 1 8606 8606 32.117 8.9685 1 + 32935 16612 22060 22075 32515 32515 -0.0009733381323258072 PEETLVEV 8 Unmodified _PEETLVEV_ 0 0 0 REV__nc|ENSG00000141098|Q3B7J2-2|GFOD2 REV__nc|ENSG00000141098|Q3B7J2-2|GFOD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2384338378906 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 49.386 1 46.387 45.887 46.887 -2.999 0 0 0 0.17894 1 9030 9030 32.117 11.663 1 + 32936 16612 22060 22075 32516 32516 -0.0009733381323258072 PEETLVEV 8 Unmodified _PEETLVEV_ 0 0 0 REV__nc|ENSG00000141098|Q3B7J2-2|GFOD2 REV__nc|ENSG00000141098|Q3B7J2-2|GFOD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384948730469 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 49.282 1 46.276 45.776 46.776 -3.0068 0 0 0 0.12938 1 9038 9038 40.449 14.107 1 + 32937 16612 22060 22075 32517 32517 -0.0009733381323258072 PEEVDLKK 8 Unmodified _PEEVDLKK_ 0 0 0 REV__ENST00000540626.5_1_11:71714575-71718510:-|nuORF REV__ENST00000540626.5_1_11:71714575-71718510:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 480.75555419921875 2 479.266207 956.517862 0.31256 0.0001498 -0.41299 -0.00019793 -0.10043 -4.8133E-05 479.26593857299196 147.86 0.91113 142.8 142.39 143.3 -5.0595 56 25 3 0 0 0 8448 1 28670 28670 14.838 11.251 1 9063800 + 32938 16395 22061 22076 32518 32518 0.03786347832055981 PEFEQEEDD 9 Unmodified _PEFEQEEDD_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;ENST00000492227.1_1_1:114939070-114940443:-|nuORF;ENST00000478032.1_1_1:114940272-114940509:-|nuORF nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 569.2418212890625 2 569.214566 1136.41458 NaN NaN NaN NaN NaN NaN NaN 172.23 1 167.35 166.85 167.85 -4.881 0 0 0 0.23508 1 34172 34172 2.0598 0 1 32939 7354 22062 22077 32519 32519 -0.1481722913708836 PEFRNYKQ 8 Unmodified _PEFRNYKQ_ 0 0 0 nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENSG00000048342|ENST00000424120|CC2D2A nc|ENSG00000048342|Q9P2K1-2|CC2D2A nc|ENSG00000048342|Q9P2K1-2|CC2D2A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2769165039062 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 174.75 1 169.86 169.36 170.36 -4.8845 0 0 0 0.21486 1 34725 34725 5.2307 0.90143 1 32940 1226 22063 22078 32520 32520 -0.001803118423140404 PEFYYDTY 8 Unmodified _PEFYYDTY_ 0 0 0 nc|ENSG00000139915|Q7Z553|MDGA2;MDGA2|p.I945Lfs*8|1|0.13|ENSG00000139915|chr14:46841973-46841973|A/-|frameshift_variant;ENSG00000139915|ENST00000399232|MDGA2;nc|ENSG00000139915|Q7Z553-2|MDGA2;ENST00000557238.5_1_14:47341050-47530490:-|nuORF;ENST00000555521.1_1_14:47343236-47389373:-|nuORF nc|ENSG00000139915|Q7Z553|MDGA2 nc|ENSG00000139915|Q7Z553|MDGA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 549.2166748046875 2 549.226748 1096.43894 NaN NaN NaN NaN NaN NaN NaN 140.21 1 135.26 134.76 135.76 -4.952 0 0 0 0.21486 1 26985 26985 5.7604 0.52976 1 32941 4270 22064 22079 32521 32521 -0.10541924192898477 PEGDFPFPVKA 11 Unmodified _PEGDFPFPVKA_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant;ENST00000470757.5_1_3:10106087-10114602:+|nuORF nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2885131835938 2 602.305864 1202.59717 NaN NaN NaN NaN NaN NaN NaN 172.82 1 167.92 167.42 168.42 -4.8977 0 0 0 0.23087 1 34291 34291 7.609 1.4032 1 32942 4558 22065 22080 32522 32522 0.0039799478618078865 PEGEDWDEE 9 Unmodified _PEGEDWDEE_ 0 0 0 ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 552.9861450195312 2 553.201458 1104.38836 NaN NaN NaN NaN NaN NaN NaN 173.27 1 173.27 172.77 173.77 0 0 0 0 0.23508 1 35821 35821 4.3292 0 1 32943 5172 22066 22081 32523 32523 -0.159654983085602 PEGGCQEVPQ 10 Unmodified _PEGGCQEVPQ_ 0 0 0 nc|ENSG00000285687|A8MWA6|FAM90A22 nc|ENSG00000285687|A8MWA6|FAM90A22 nc|ENSG00000285687|A8MWA6|FAM90A22 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2606201171875 2 522.226756 1042.43896 NaN NaN NaN NaN NaN NaN NaN 127.71 1 123.1 122.6 123.6 -4.6172 0 0 0 0.22588 1 25183 25183 12.241 2.0573 1 32944 12650 22067 22082 32524 32524 -0.08056247464537591 PEGGGGGP 8 Unmodified _PEGGGGGP_ 0 0 0 ENSG00000262919|ENST00000576892|CCNQ;nc|ENSG00000262919|Q8N1B3-2|CCNQ ENSG00000262919|ENST00000576892|CCNQ ENSG00000262919|ENST00000576892|CCNQ MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1720275878906 2 314.140279 626.266004 NaN NaN NaN NaN NaN NaN NaN 35.598 1 33.345 32.845 33.845 -2.2527 0 0 0 0.21486 1 6276 6276 2.8892 0 1 32945 7969 22068 22083 32525 32525 -0.06207825738806605 PEGLRRLYH 9 Unmodified _PEGLRRLYH_ 0 0 0 TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 570.63623046875 2 570.817264 1139.61998 NaN NaN NaN NaN NaN NaN NaN 172.13 1 167.34 166.84 167.84 -4.7898 0 0 0 0.23508 1 35043 35043 7.2892 1.5574 1 32946 26536 22069 22084 32526 32526 0.055750586943076996 PEGMPGARGPL 11 Unmodified _PEGMPGARGPL_ 0 0 0 REV__ENST00000341807.8_1_8:139601498-139734429:-|nuORF REV__ENST00000341807.8_1_8:139601498-139734429:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2581787109375 2 541.276583 1080.53861 NaN NaN NaN NaN NaN NaN NaN 133.44 1 128.8 128.3 129.3 -4.6399 0 0 0 0.22501 1 26308 26308 12.241 0 1 + 32947 18104 22070 22085 32527 32527 0.0015661494007872534 PEGPGCCV 8 Unmodified _PEGPGCCV_ 0 0 0 MAP4K2|p.R677C|1|0.29|ENSG00000168067|chr11:64791972-64791972|G/A|missense_variant MAP4K2|p.R677C|1|0.29|ENSG00000168067|chr11:64791972-64791972|G/A|missense_variant MAP4K2|p.R677C|1|0.29|ENSG00000168067|chr11:64791972-64791972|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2107849121094 2 381.151474 760.288396 NaN NaN NaN NaN NaN NaN NaN 146.05 1 146.05 145.55 146.55 0 0 0 0 0.2396 1 29199 29199 0.12286 0 1 32948 12111 22071 22086 32528 32528 -0.10133685657046954 PEGQARCL 8 Unmodified _PEGQARCL_ 0 0 0 REV__nc|ENSG00000138674|O94979-7|SEC31A REV__nc|ENSG00000138674|O94979-7|SEC31A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2149963378906 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 126.02 1 121.42 120.92 121.92 -4.5984 0 0 0 0.21486 1 24845 24845 10.183 0 1 + 32949 16478 22072 22087 32529 32529 -0.023875877025943737 PEGSAAGP 8 Unmodified _PEGSAAGP_ 0 0 0 ENST00000370794.7_1_1:78225412-78225514:-|nuORF ENST00000370794.7_1_1:78225412-78225514:-|nuORF ENST00000370794.7_1_1:78225412-78225514:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.1866149902344 2 343.161211 684.307869 NaN NaN NaN NaN NaN NaN NaN 68.087 1 64.978 64.478 65.478 -3.1086 0 0 0 0.22666 1 13217 13217 1.7423 1.6783 1 32950 9147 22073 22088 32530 32530 -0.04691270050284402 PEGSLNRT 8 Unmodified _PEGSLNRT_ 0 0 0 REV__ENSG00000127124|ENST00000372583|HIVEP3 REV__ENSG00000127124|ENST00000372583|HIVEP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2268371582031 2 437.224874 872.435195 NaN NaN NaN NaN NaN NaN NaN 23.47 1 21.917 21.417 22.417 -1.5532 0 0 0 0.20135 1 4050 4050 24.021 3.5669 1 + 32951 15878 22074 22089 32531 32531 -0.006125491760826662 PEGSVLRRGFQ 11 Unmodified _PEGSVLRRGFQ_ 0 0 0 ENSG00000204624|ENST00000294484|DISP3 ENSG00000204624|ENST00000294484|DISP3 ENSG00000204624|ENST00000294484|DISP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7715454101562 2 623.338561 1244.66257 0.36275 0.00022612 3.441 0.0021449 3.8038 0.002371 623.8423807006135 149.25 0.20193 144.05 143.94 144.15 -5.1994 6 4 2 0 0 0 0.95396 1 28910 28910 3.8763 2.8049 1 2480400 32952 7598 22075 22090 32532 32532 0.05002409031908428 PEHGSATRLR 10 Unmodified _PEHGSATRLR_ 0 0 0 REV__nc|ENSG00000187583|Q494U1-3|PLEKHN1 REV__nc|ENSG00000187583|Q494U1-3|PLEKHN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.20428466796875 3 375.203744 1122.5894 NaN NaN NaN NaN NaN NaN NaN 47.16 1 44.3 43.8 44.8 -2.8607 0 0 0 0.22548 1 8904 8904 18.721 2.5721 1 + 32953 19098 22076 22091 32533 32533 0.033012803092560716 PEHLLSAHLY 10 Unmodified _PEHLLSAHLY_ 0 0 0 ENST00000506271.1_1_17:46993425-46993515:+|nuORF ENST00000506271.1_1_17:46993425-46993515:+|nuORF ENST00000506271.1_1_17:46993425-46993515:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.25048828125 2 590.31148 1178.60841 NaN NaN NaN NaN NaN NaN NaN 130.03 1 125.2 124.7 125.7 -4.8355 0 0 0 0.22588 1 24966 24966 10.074 1.3285 1 32954 10681 22077 22092 32534 32534 0.026248168803249428 PEHLPVVLPF 10 Unmodified _PEHLPVVLPF_ 0 0 0 ENST00000425923.1_1_5:131657926-131660304:+|nuORF ENST00000425923.1_1_5:131657926-131660304:+|nuORF ENST00000425923.1_1_5:131657926-131660304:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 574.519775390625 2 574.329142 1146.64373 NaN NaN NaN NaN NaN NaN NaN 173.83 1 173.83 173.33 174.33 0 0 0 0 0.22588 1 35964 35964 10.824 1.4408 1 32955 9719 22078 22093 32535 32535 0.0762747940814279 PEHNNTMN 8 Unmodified _PEHNNTMN_ 0 0 0 tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1 tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1 tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7275085449219 2 478.698166 955.381779 NaN NaN NaN NaN NaN NaN NaN 90.278 1 90.278 89.778 90.778 0 0 0 0 0.23538 1 17634 17634 0.12286 0.11459 1 32956 25942 22079 22094 32536 32536 -0.09769669950276239 PEHPLKQI 8 Unmodified _PEHPLKQI_ 0 0 0 CCAR2|p.R417Gfs*89|3|0.26|ENSG00000158941|chr8:22615462-22615462|C/-|frameshift_variant;CCAR2|p.L505*|5|0.17|ENSG00000158941|chr8:22615811-22615811|C/-|frameshift_variant;nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2 CCAR2|p.R417Gfs*89|3|0.26|ENSG00000158941|chr8:22615462-22615462|C/-|frameshift_variant CCAR2|p.R417Gfs*89|3|0.26|ENSG00000158941|chr8:22615462-22615462|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7783203125 2 481.276909 960.539266 0.093983 4.5232E-05 0.02894 1.3928E-05 0.12292 5.916E-05 481.27692959380755 60.579 1.8293 57.355 56.533 58.362 -3.2237 85 51 2 0 0 0 8448 1 11375 11375 0.25148 0 1 1364400 32957 405 22080 22095 32537 32537 0.05741777651417124 PEHVGYDG 8 Unmodified _PEHVGYDG_ 0 0 0 ENSG00000132357|ENST00000254691|CARD6 ENSG00000132357|ENST00000254691|CARD6 ENSG00000132357|ENST00000254691|CARD6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2164611816406 2 437.1905 872.366446 NaN NaN NaN NaN NaN NaN NaN 67.165 1 63.668 63.168 64.168 -3.4965 0 0 0 0.21486 1 12597 12597 5.2307 0 1 32958 3720 22081 22096 32538 32538 -0.07484213475800061 PEIVAPVVVTQ 11 Unmodified _PEIVAPVVVTQ_ 0 0 0 ENST00000503652.1_1_5:75377826-75377994:-|nuORF ENST00000503652.1_1_5:75377826-75377994:-|nuORF ENST00000503652.1_1_5:75377826-75377994:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.335693359375 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 65.165 1 65.165 64.665 65.665 0 0 0 0 0.22683 1 12556 12556 10.8 1.4164 1 32959 10646 22082 22097 32539 32539 0.09047140854386271 PEIYIQLQREY 11 Unmodified _PEIYIQLQREY_ 0 0 0 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 725.7987060546875 2 726.380091 1450.74563 0.4565 0.00033159 4.2509 0.0030877 4.7074 0.0034193 726.8841159933875 174.29 0.17546 174.29 174.17 174.34 0 5 4 2 0 0 0 0.96132 1 36072 36072 4.897 1.6157 1 5680500 32960 2211 22083 22098 32540 32540 0.03828680969218112 PEKALVLLQVK 11 Unmodified _PEKALVLLQVK_ 0 0 0 ENST00000479356.1_1_17:71354047-71433905:-|nuORF;nc|ENSG00000069188|Q58EX2-2|SDK2 ENST00000479356.1_1_17:71354047-71433905:-|nuORF ENST00000479356.1_1_17:71354047-71433905:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 619.52392578125 2 619.397556 1236.78056 NaN NaN NaN NaN NaN NaN NaN 170.61 1 170.61 170.11 171.11 0 0 0 0 0.23698 1 35091 35091 4.1895 0.59301 1 32961 10340 22084 22099 32541 32541 0.1716396856782012 PEKDKFFLK 9 Unmodified _PEKDKFFLK_ 0 0 0 REV__DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant REV__DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3278198242188 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 172.35 1 167.46 166.96 167.96 -4.881 0 0 0 0.19638 1 34204 34204 0.40827 0.28045 1 + 32962 13710 22085 22100 32542 32542 0.06935175545504535 PEKECTPYDY 10 Unmodified _PEKECTPYDY_ 0 0 0 EXOSC10|p.F815C|1|0.2|ENSG00000171824|chr1:11069603-11069603|A/C|missense_variant EXOSC10|p.F815C|1|0.2|ENSG00000171824|chr1:11069603-11069603|A/C|missense_variant EXOSC10|p.F815C|1|0.2|ENSG00000171824|chr1:11069603-11069603|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7550048828125 2 622.760629 1243.5067 NaN NaN NaN NaN NaN NaN NaN 170.16 1 170.16 169.66 170.66 0 0 0 0 0.22588 1 34975 34975 6.2058 0 1 32963 11789 22086 22101 32543 32543 -0.10530842324396872 PEKERMWSEAE 11 Unmodified _PEKERMWSEAE_ 0 0 0 REV__nc|ENSG00000197694|Q13813-3|SPTAN1 REV__nc|ENSG00000197694|Q13813-3|SPTAN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 696.3157958984375 2 696.316634 1390.61871 NaN NaN NaN NaN NaN NaN NaN 173.29 1 173.29 172.79 173.79 0 0 0 0 0.23519 1 35827 35827 4.1895 0.59301 1 + 32964 19359 22087 22102 32544 32544 -0.06096988247372792 PEKFVKEQKQ 10 Unmodified _PEKFVKEQKQ_ 0 0 0 ENST00000466694.5_1_13:25875911-25912925:+|nuORF ENST00000466694.5_1_13:25875911-25912925:+|nuORF ENST00000466694.5_1_13:25875911-25912925:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7518310546875 2 630.85097 1259.68739 0.27881 0.00017589 3.3537 0.0021157 3.6325 0.0022915 631.3521967770206 133.06 0.17583 128.21 128.07 128.24 -4.8528 6 4 2 0 0 0 0.90598 1 25567 25567 2.9952 0 1 992950 32965 10137 22088 22103 32545 32545 0.06793044114624536 PEKGEEPTTEK 11 Unmodified _PEKGEEPTTEK_ 0 0 0 nc|ENSG00000169062|Q9H1J1-2|UPF3A;ENSG00000169062|ENST00000375299|UPF3A nc|ENSG00000169062|Q9H1J1-2|UPF3A nc|ENSG00000169062|Q9H1J1-2|UPF3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7640380859375 2 622.803882 1243.59321 0.4292 0.0002673 3.7477 0.0023341 4.1769 0.0026014 623.3091226773387 169.39 0.17119 164.47 164.36 164.53 -4.9295 5 4 2 0 0 0 0.71397 1 33436 33436 10.8 1.4164 1 7119900 32966 5962 22089 22104 32546 32546 -0.01884139498224613 PEKIIKSTL 9 Unmodified _PEKIIKSTL_ 0 0 0 tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1 tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1 tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.186767578125 3 343.549859 1027.62775 -0.32463 -0.00011153 0.025545 8.776E-06 -0.29909 -0.00010275 343.54977856691215 72.246 0.55055 68.707 68.33 68.881 -3.5385 25 15 2 0 0 0 0.8799 1 13685 13685 2.4985 2.2916 1 978780 32967 25944 22090 22105 32547 32547 0.11503773171239118 PEKIIKSTL 9 Unmodified _PEKIIKSTL_ 0 0 0 tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1 tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1 tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 343.549859 1027.62775 -0.65941 -0.00022654 0.72129 0.0002478 0.061884 2.126E-05 343.550079455385 68.898 0.60159 68.898 68.469 69.071 0 0.095423 0.00032949 NaN 2.4985 18 16 2 NaN NaN NaN NaN 0 NaN NaN 0 908590 32968 25944 22090 22105 0.11503773171239118 PEKIINEHV 9 Unmodified _PEKIINEHV_ 0 0 0 SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2 SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012023925781 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112.99 1 108.46 107.96 108.96 -4.5259 0 0 0 0.23508 1 21689 21689 2.2828 0.43854 1 32969 4089 22091 22106 32548 32548 0.046171279889904326 PEKKVLDIPPS 11 Unmodified _PEKKVLDIPPS_ 0 0 0 REV__ENSG00000165895|ENST00000298815|ARHGAP42 REV__ENSG00000165895|ENST00000298815|ARHGAP42 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 612.2813720703125 2 611.855721 1221.69689 0.48824 0.00029873 -4.138 -0.0025318 -3.6497 -0.0022331 611.8519861151689 166.41 0.1713 161.43 161.33 161.5 -4.9811 6 4 2 0 0 0 0.8952 1 32587 32587 13.615 7.883 1 8581200 + 32970 17805 22092 22107 32549 32549 0.09490812400144932 PEKKWFME 8 Unmodified _PEKKWFME_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7685546875 2 547.770603 1093.52665 NaN NaN NaN NaN NaN NaN NaN 173.18 1 173.18 172.68 173.68 0 0 0 0 0.21486 1 35798 35798 8.5933 1.304 1 32971 1552 22093 22108 32550 32550 -0.01637001803101157 PEKKWFME 8 Unmodified _PEKKWFME_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7866821289062 2 547.770603 1093.52665 NaN NaN NaN NaN NaN NaN NaN 172.23 1 167.44 166.94 167.94 -4.7898 0 0 0 0.21452 1 35072 35072 13.508 2.684 1 32972 1552 22093 22108 32551 32551 -0.01637001803101157 PEKLFRPVYP 10 Unmodified _PEKLFRPVYP_ 0 0 0 REV__ENSG00000284526|ENST00000640006|unknown REV__ENSG00000284526|ENST00000640006|unknown MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7763061523438 2 623.353148 1244.69174 1.2238 0.00076289 3.0595 0.0019072 4.2834 0.0026701 623.3532146857716 171.64 0.31082 166.85 166.77 167.08 -4.7898 11 8 2 0 0 0 0.87565 1 34907 34907 15.248 4.4246 1 12483000 + 32973 19965 22094 22109 32552 32552 0.07918553328181588 PEKNTILIGF 10 Unmodified _PEKNTILIGF_ 0 0 0 tr|U7T2T1|U7T2T1_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00448PE=4SV=1 tr|U7T2T1|U7T2T1_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00448PE=4SV=1 tr|U7T2T1|U7T2T1_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00448PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 566.3560180664062 2 566.324057 1130.63356 NaN NaN NaN NaN NaN NaN NaN 170.89 1 166.01 165.51 166.51 -4.873 0 0 0 0.22588 1 33839 33839 10.074 2.465 1 32974 26377 22095 22110 32553 32553 0.07346871682921119 PEKPTYSIYY 10 Unmodified _PEKPTYSIYY_ 0 0 0 REV__nc|ENSG00000134253|Q9H8W5-2|TRIM45 REV__nc|ENSG00000134253|Q9H8W5-2|TRIM45 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.765869140625 2 630.810979 1259.6074 NaN NaN NaN NaN NaN NaN NaN 171.51 1 166.6 166.1 167.1 -4.9149 0 0 0 0.22588 1 33972 33972 8.7454 1.4562 1 + 32975 16201 22096 22111 32554 32554 -0.012014422792162804 PEKRIASEI 9 Unmodified _PEKRIASEI_ 0 0 0 ENST00000413765.6_1_7:108039884-108039995:-|nuORF ENST00000413765.6_1_7:108039884-108039995:-|nuORF ENST00000413765.6_1_7:108039884-108039995:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.20147705078125 3 348.201229 1041.58186 NaN NaN NaN NaN NaN NaN NaN 77.971 1 74.507 74.007 75.007 -3.4633 0 0 0 0.23508 1 15225 15225 4.897 0 1 32976 9594 22097 22112 32555 32555 0.06273127989015848 PEKRPRYNS 9 Unmodified _PEKRPRYNS_ 0 0 0 REV__nc|ENSG00000164073|Q8NHS3-2|MFSD8 REV__nc|ENSG00000164073|Q8NHS3-2|MFSD8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 382.8603210449219 3 382.871995 1145.59415 NaN NaN NaN NaN NaN NaN NaN 9.3397 1 8.3051 7.8051 8.8051 -1.0347 0 0 0 0.23508 1 946 946 0.26902 0 1 + 32977 17644 22098 22113 32556 32556 0.02718164452039673 PEKRRTSL 8 Unmodified _PEKRRTSL_ 0 0 0 ENSG00000128045|ENST00000248706|RASL11B ENSG00000128045|ENST00000248706|RASL11B ENSG00000128045|ENST00000248706|RASL11B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 329.00006103515625 3 329.529569 985.566878 -0.40198 -0.00013246 0.48635 0.00016027 0.084377 2.7805E-05 329.52970226293723 36.231 0.35191 36.231 36.035 36.387 0 21 9 3 0 0 0 1.0265 1 6658 6658 0.40072 0 1 5209000 32978 3505 22099 22114 32557 32557 0.07351680911676794 PEKRRTSL 8 Unmodified _PEKRRTSL_ 0 0 0 ENSG00000128045|ENST00000248706|RASL11B ENSG00000128045|ENST00000248706|RASL11B ENSG00000128045|ENST00000248706|RASL11B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 329.529569 985.566878 -0.60356 -0.00019889 0.6985 0.00023018 0.094936 3.1284E-05 329.52976136163477 38.556 0.42325 36.007 35.802 36.225 -2.5491 -0.040754 0.00025261 NaN 0.40072 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4329900 32979 3505 22099 22114 0.07351680911676794 PEKRRTSL 8 Unmodified _PEKRRTSL_ 0 0 0 ENSG00000128045|ENST00000248706|RASL11B ENSG00000128045|ENST00000248706|RASL11B ENSG00000128045|ENST00000248706|RASL11B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 329.529569 985.566878 0.058018 1.9119E-05 -0.00028513 -9.3959E-08 0.057733 1.9025E-05 329.52953080499833 38.404 0.45486 35.962 35.775 36.23 -2.4419 -0.085968 -0.0004382 NaN 0.40072 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 5218500 32980 3505 22099 22114 0.07351680911676794 PEKRRTSL 8 Unmodified _PEKRRTSL_ 0 0 0 ENSG00000128045|ENST00000248706|RASL11B ENSG00000128045|ENST00000248706|RASL11B ENSG00000128045|ENST00000248706|RASL11B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 329.529569 985.566878 -0.5009 -0.00016506 0.54308 0.00017896 0.042181 1.39E-05 329.5297022026015 38.397 0.4557 35.992 35.775 36.231 -2.4049 -0.055747 9.8967E-05 NaN 0.40072 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3706100 32981 3505 22099 22114 0.07351680911676794 PEKSWNELL 9 Unmodified _PEKSWNELL_ 0 0 0 CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant;ENSG00000104218|ENST00000678616|CSPP1 CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 372.1117248535156 3 372.529235 1114.56587 0.15838 5.9E-05 -0.3224 -0.00012011 -0.16403 -6.1105E-05 372.5291000096266 35.454 0.9724 33.201 32.846 33.818 -2.2527 91 27 5 0 0 0 0.88054 1 6369 6369 0.86438 0 1 72466000 32982 734 22100 22115 32558 32558 0.01317421752082737 PEKTPLSIPTP 11 Unmodified _PEKTPLSIPTP_ 0 0 0 REV__ENST00000545521.5_1_16:29821598-29821694:+|nuORF REV__ENST00000545521.5_1_16:29821598-29821694:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2499389648438 2 590.334621 1178.65469 NaN NaN NaN NaN NaN NaN NaN 161.97 1 157.18 156.68 157.68 -4.7898 0 0 0 0.22765 1 32212 32212 10.151 2.5416 1 + 32983 22889 22101 22116 32559 32559 0.07250836991761389 PELDLATD 8 Unmodified _PELDLATD_ 0 0 0 REV__SLC45A4|p.R345Afs*34|1|0.27|ENSG00000022567|chr8:141218607-141218607|G/-|frameshift_variant REV__SLC45A4|p.R345Afs*34|1|0.27|ENSG00000022567|chr8:141218607-141218607|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.215087890625 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 89.978 1 86.119 85.619 86.619 -3.8595 0 0 0 0.21486 1 17605 17605 5.2307 0 1 + 32984 13990 22102 22117 32560 32560 -0.028581933643749835 PELKLKLIK 9 Unmodified _PELKLKLIK_ 0 0 0 ENSG00000135931|ENST00000611582|ARMC9;nc|ENSG00000135931|Q7Z3E5-2|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2772216796875 2 541.37081 1080.72707 NaN NaN NaN NaN NaN NaN NaN 14.916 1 13.743 13.243 14.243 -1.173 0 0 0 0.23508 1 2054 2054 0.6015 0 1 32985 3968 22103 22118 32561 32561 0.18993215855971357 PELLIILMYR 10 Unmodified _PELLIILMYR_ 0 0 0 REV__ENST00000599328.1_1_19:53744649-53744913:-|nuORF REV__ENST00000599328.1_1_19:53744649-53744913:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7714233398438 2 630.872859 1259.73117 NaN NaN NaN NaN NaN NaN NaN 178.57 1 173.71 173.21 174.21 -4.8686 0 0 0 0.22588 1 35553 35553 1.6526 0 1 + 32986 23400 22104 22119 32562 32562 0.11168937287379777 PELNEIKR 8 Unmodified _PELNEIKR_ 0 0 0 REV__ENSG00000154099|ENST00000378553|DNAAF1 REV__ENSG00000154099|ENST00000378553|DNAAF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.9991760253906 3 333.525825 997.555644 0.023001 7.6715E-06 1.2892 0.00042997 1.3122 0.00043764 333.52625194117104 39.524 0.45147 37.083 36.721 37.173 -2.4419 16 12 2 0 0 0 1.0278 1 6997 6997 0.35063 0 1 646060 + 32987 17165 22105 22120 32563 32563 0.05676858817525954 PELQKFFQKA 10 Unmodified _PELQKFFQKA_ 0 0 0 ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF ENSG00000115944|ENST00000234301|COX7A2L ENSG00000115944|ENST00000234301|COX7A2L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 618.2982177734375 2 618.342781 1234.67101 NaN NaN NaN NaN NaN NaN NaN 29.119 1 27.123 26.623 27.623 -1.9962 0 0 0 0.22588 1 4940 4940 3.5965 0 1 32988 2894 22106 22121 32564 32564 0.06305962948522392 PELREGDPSS 10 Unmodified _PELREGDPSS_ 0 0 0 nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN nc|ENSG00000049540|P15502-4|ELN nc|ENSG00000049540|P15502-4|ELN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78173828125 2 543.756735 1085.49892 NaN NaN NaN NaN NaN NaN NaN 67.687 1 67.687 67.187 68.187 0 0 0 0 0.22588 1 13085 13085 13.042 2.2185 1 32989 12216 22107 22122 32565 32565 -0.04041233529665078 PELRRRGLP 9 Unmodified _PELRRRGLP_ 0 0 0 MAEL|p.L118Ffs*5|1|0.37|ENSG00000143194|chr1:166992707-166992708|-/T|frameshift_variant;nc|ENSG00000143194|Q96JY0-2|MAEL;ENSG00000143194|ENST00000367872|MAEL MAEL|p.L118Ffs*5|1|0.37|ENSG00000143194|chr1:166992707-166992708|-/T|frameshift_variant MAEL|p.L118Ffs*5|1|0.37|ENSG00000143194|chr1:166992707-166992708|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7766723632812 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 14.626 1 13.416 12.916 13.916 -1.2106 0 0 0 0.23508 1 1953 1953 2.0598 0 1 32990 4461 22108 22123 32566 32566 0.10899051448291175 PELRSLLE 8 Unmodified _PELRSLLE_ 0 0 0 ENST00000531390.1_1_11:67050274-67051456:+|nuORF;ENST00000533077.5_1_11:67049840-67050700:+|nuORF;ENST00000532099.5_1_11:67048984-67051337:+|nuORF;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENSG00000173020|ENST00000308595|GRK2 ENST00000531390.1_1_11:67050274-67051456:+|nuORF ENST00000531390.1_1_11:67050274-67051456:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.85784912109375 3 319.518559 955.533846 0.25952 8.292E-05 1.1989 0.00038308 1.4584 0.000466 319.5188866495247 28.165 0.83964 26.41 25.965 26.805 -1.7552 56 23 3 0 0 0 8448 1 4798 4798 0.25148 0 1 5016700 32991 6259 22109 22124 32567 32567 0.0543005406894963 PELRSLLE 8 Unmodified _PELRSLLE_ 0 0 0 ENST00000531390.1_1_11:67050274-67051456:+|nuORF;ENST00000533077.5_1_11:67049840-67050700:+|nuORF;ENST00000532099.5_1_11:67048984-67051337:+|nuORF;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENSG00000173020|ENST00000308595|GRK2 ENST00000531390.1_1_11:67050274-67051456:+|nuORF ENST00000531390.1_1_11:67050274-67051456:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 319.518559 955.533846 0.52034 0.00016626 0.79156 0.00025292 1.3119 0.00041918 319.51875914393116 28.319 0.83335 26.363 25.874 26.707 -1.9561 -0.023335 -0.00018313 NaN 0.25148 63 23 4 NaN NaN NaN NaN 0 NaN NaN 0 6469200 32992 6259 22109 22124 0.0543005406894963 PELRTEAPTPQ 11 Unmodified _PELRTEAPTPQ_ 0 0 0 REV__ENST00000391694.4_1_19:58989172-58992090:+|nuORF REV__ENST00000391694.4_1_19:58989172-58992090:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 619.6317138671875 2 619.822409 1237.63027 NaN NaN NaN NaN NaN NaN NaN 170.58 1 170.58 170.08 171.08 0 0 0 0 0.22765 1 35082 35082 10.151 3.0488 1 + 32993 21199 22110 22125 32568 32568 0.020955768382464157 PELSIPVTPQ 10 Unmodified _PELSIPVTPQ_ 0 0 0 nc|ENSG00000284723|Q8NH09|OR8S1 nc|ENSG00000284723|Q8NH09|OR8S1 nc|ENSG00000284723|Q8NH09|OR8S1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2745971679688 2 540.800414 1079.58628 0.29548 0.00015979 -1.9548 -0.0010572 -1.6593 -0.00089736 541.2998655375858 133.97 0.17337 133.97 133.9 134.08 0 6 4 2 0 0 0 0.84217 1 26505 26505 4.1895 0 1 1513100 32994 12646 22111 22126 32569 32569 0.049665924119153715 PELTPEAVY 9 Unmodified _PELTPEAVY_ 0 0 0 REV__ENSG00000171798|ENST00000304613|KNDC1;REV__nc|ENSG00000171798|Q76NI1-4|KNDC1 REV__ENSG00000171798|ENST00000304613|KNDC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.1649169921875 3 340.174569 1017.50188 NaN NaN NaN NaN NaN NaN NaN 70.141 1 70.141 69.641 70.641 0 0 0 0 0.23508 1 13584 13584 5.2969 2.5617 1 + 32995 18250;24169 22112 22127 32570 32570 -0.006173584048610792 PELVTHTLHTL 11 Unmodified _PELVTHTLHTL_ 0 0 0 REV__ENST00000360270.6_1_X:64959754-64959913:+|nuORF REV__ENST00000360270.6_1_X:64959754-64959913:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7784423828125 2 630.85097 1259.68739 NaN NaN NaN NaN NaN NaN NaN 170.61 1 165.69 165.19 166.19 -4.9149 0 0 0 0.22683 1 33739 33739 10.8 0.64894 1 + 32996 20863 22113 22128 32571 32571 0.06793044114624536 PEMLEAPIG 9 Unmodified _PEMLEAPIG_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7423400878906 2 478.741511 955.468469 NaN NaN NaN NaN NaN NaN NaN 151.89 1 146.65 146.15 147.15 -5.2365 0 0 0 0.21848 1 29444 29444 18.135 4.6271 1 + 32997 19707 22114 22129 32572 32572 -0.01104683448409105 PEMQRVKHNQ 10 Unmodified _PEMQRVKHNQ_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 633.8220825195312 2 633.822221 1265.62989 NaN NaN NaN NaN NaN NaN NaN 166.7 1 161.75 161.25 162.25 -4.9484 0 0 0 0.22588 1 32695 32695 13.042 4.2971 1 32998 6829 22115 22130 32573 32573 0.007698786374021438 PEMYMLSPI 9 Unmodified _PEMYMLSPI_ 0 0 0 REV__ENSG00000179148|ENST00000448843|ALOXE3 REV__ENSG00000179148|ENST00000448843|ALOXE3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.284423828125 2 540.758846 1079.50314 0.17208 9.3053E-05 0.20572 0.00011124 0.37779 0.0002043 540.7588899903683 14.266 0.20672 14.266 14.179 14.386 0 8 5 2 0 0 0 0.74257 1 2096 2096 4.3292 0.38484 1 1603500 + 32999 18644 22116 22131 32574 32574 -0.03343183631955071 PENCCYWY 8 Unmodified _PENCCYWY_ 0 0 0 REV__ENST00000504875.5_1_5:149433032-149433299:-|nuORF REV__ENST00000504875.5_1_5:149433032-149433299:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2126159667969 3 359.798339 1076.37319 -0.27449 -9.8761E-05 2.447 0.00088041 2.1725 0.00078165 359.79933733901663 33.267 0.27165 31.051 30.976 31.248 -2.2158 12 7 2 0 0 0 0.83982 1 5790 5790 1.6526 0.58116 1 392110 + 33000 22469 22117 22132 32575 32575 -0.16194359911105494 PENILITKH 9 Unmodified _PENILITKH_ 0 0 0 nc|ENSG00000100490|Q00532-3|CDKL1;ENSG00000100490|ENST00000395834|CDKL1;nc|ENSG00000100490|Q00532-2|CDKL1 nc|ENSG00000100490|Q00532-3|CDKL1 nc|ENSG00000100490|Q00532-3|CDKL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.086181640625 3 355.541475 1063.60259 -0.75244 -0.00026752 0.73678 0.00026196 -0.015665 -5.5697E-06 355.541713385602 50.746 0.62823 47.694 47.331 47.959 -3.0517 48 17 4 0 0 0 0.86532 1 9284 9284 1.0715 0 1 5560800 33001 1984 22118 22133 32576 32576 0.07333718368658992 PENILITKH 9 Unmodified _PENILITKH_ 0 0 0 nc|ENSG00000100490|Q00532-3|CDKL1;ENSG00000100490|ENST00000395834|CDKL1;nc|ENSG00000100490|Q00532-2|CDKL1 nc|ENSG00000100490|Q00532-3|CDKL1 nc|ENSG00000100490|Q00532-3|CDKL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 355.541475 1063.60259 0.067749 2.4088E-05 0.01202 4.2735E-06 0.079769 2.8361E-05 355.54142172868586 47.817 0.59757 47.817 47.47 48.068 0 0.097775 -0.00026755 NaN 1.0715 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4514100 33002 1984 22118 22133 0.07333718368658992 PENILITKH 9 Unmodified _PENILITKH_ 0 0 0 nc|ENSG00000100490|Q00532-3|CDKL1;ENSG00000100490|ENST00000395834|CDKL1;nc|ENSG00000100490|Q00532-2|CDKL1 nc|ENSG00000100490|Q00532-3|CDKL1 nc|ENSG00000100490|Q00532-3|CDKL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 355.541475 1063.60259 -0.41219 -0.00014655 0.29101 0.00010347 -0.12118 -4.3085E-05 355.54152962729125 50.533 0.60403 47.652 47.36 47.964 -2.8811 -0.066513 3.0029E-05 NaN 1.0715 42 16 4 NaN NaN NaN NaN 0 NaN NaN 0 6450300 33003 1984 22118 22133 0.07333718368658992 PENILITKH 9 Unmodified _PENILITKH_ 0 0 0 nc|ENSG00000100490|Q00532-3|CDKL1;ENSG00000100490|ENST00000395834|CDKL1;nc|ENSG00000100490|Q00532-2|CDKL1 nc|ENSG00000100490|Q00532-3|CDKL1 nc|ENSG00000100490|Q00532-3|CDKL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 355.541475 1063.60259 0.04262 1.5153E-05 -0.028414 -1.0102E-05 0.014206 5.0506E-06 355.54139695654345 50.758 0.59105 47.712 47.424 48.015 -3.0453 -0.006596 -0.00031068 NaN 1.0715 42 16 3 NaN NaN NaN NaN 0 NaN NaN 0 6130100 33004 1984 22118 22133 0.07333718368658992 PENRVTGHR 9 Unmodified _PENRVTGHR_ 0 0 0 REV__ENST00000606974.5_1_13:52760906-52768420:-|nuORF REV__ENST00000606974.5_1_13:52760906-52768420:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2830200195312 2 533.281046 1064.54754 NaN NaN NaN NaN NaN NaN NaN 172.93 1 168.14 167.64 168.64 -4.7898 0 0 0 0.23508 1 35253 35253 10.074 1.3285 1 + 33005 23464 22119 22134 32577 32577 0.01784724620756606 PENYECYE 8 Unmodified _PENYECYE_ 0 0 0 REV__ZNF569|p.H164Y|1|0.2|ENSG00000196437|chr19:37414168-37414168|G/A|missense_variant REV__ZNF569|p.H164Y|1|0.2|ENSG00000196437|chr19:37414168-37414168|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6948852539062 2 523.692215 1045.36988 NaN NaN NaN NaN NaN NaN NaN 153.72 1 153.72 153.22 154.22 0 0 0 0 0.2396 1 30804 30804 0 0 1 + 33006 25583 22120 22135 32578 32578 -0.15099331484134382 PENYECYE 8 Unmodified _PENYECYE_ 0 0 0 REV__ZNF569|p.H164Y|1|0.2|ENSG00000196437|chr19:37414168-37414168|G/A|missense_variant REV__ZNF569|p.H164Y|1|0.2|ENSG00000196437|chr19:37414168-37414168|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6796875 2 523.692215 1045.36988 NaN NaN NaN NaN NaN NaN NaN 136.47 1 131.64 131.14 132.14 -4.8307 0 0 0 0.21486 1 26278 26278 3.5965 1.019 1 + 33007 25583 22120 22135 32579 32579 -0.15099331484134382 PEPALSRQAR 10 Unmodified _PEPALSRQAR_ 0 0 0 REV__ENSG00000135723|ENST00000258201|FHOD1 REV__ENSG00000135723|ENST00000258201|FHOD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.1169128417969 3 375.543878 1123.60981 -0.69724 -0.00026184 -0.20582 -7.7296E-05 -0.90306 -0.00033914 375.5436729365531 16.068 0.35511 14.852 14.619 14.974 -1.2159 18 9 3 0 0 0 0.91149 1 2472 2472 1.9064 0.83491 1 1554900 + 33008 16285 22121 22136 32580 32580 0.05294450969063291 PEPCCCVC 8 Unmodified _PEPCCCVC_ 0 0 0 REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 427.137939453125 2 427.139195 852.263837 NaN NaN NaN NaN NaN NaN NaN 178.32 1 178.32 177.82 178.82 0 0 0 0 0.21486 1 36943 36943 0.79363 0.79363 1 + 33009 24819 22122 22137 32581 32581 -0.16820405126452442 PEPCCCVC 8 Unmodified _PEPCCCVC_ 0 0 0 REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.13775634765625 2 427.139195 852.263837 NaN NaN NaN NaN NaN NaN NaN 118.35 1 113.85 113.35 114.35 -4.502 0 0 0 0.21486 1 23335 23335 0.69038 0.69038 1 + 33010 24819 22122 22137 32582 32582 -0.16820405126452442 PEPCCCVC 8 Unmodified _PEPCCCVC_ 0 0 0 REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.13726806640625 2 427.139195 852.263837 NaN NaN NaN NaN NaN NaN NaN 25.803 1 24.169 23.669 24.669 -1.6347 0 0 0 0.21486 1 4257 4257 0.69038 0.69038 1 + 33011 24819 22122 22137 32583 32583 -0.16820405126452442 PEPCCCVC 8 Unmodified _PEPCCCVC_ 0 0 0 REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.1394958496094 2 427.139195 852.263837 NaN NaN NaN NaN NaN NaN NaN 147.77 1 142.62 142.12 143.12 -5.1557 0 0 0 0.21486 1 28601 28601 9.3474 6.77 1 + 33012 24819 22122 22137 32584 32584 -0.16820405126452442 PEPCCCVC 8 Unmodified _PEPCCCVC_ 0 0 0 REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.13922119140625 2 427.139195 852.263837 NaN NaN NaN NaN NaN NaN NaN 160.12 1 154.89 154.39 155.39 -5.2299 0 0 0 0.21486 1 31084 31084 2.3027 1.6124 1 + 33013 24819 22122 22137 32585 32585 -0.16820405126452442 PEPCCCVC 8 Unmodified _PEPCCCVC_ 0 0 0 REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant REV__TMEM218|p.L25Cfs*24|1|0.29|ENSG00000150433|chr11:125102169-125102169|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.1407470703125 2 427.139195 852.263837 NaN NaN NaN NaN NaN NaN NaN 155.38 1 150.12 149.62 150.62 -5.2526 0 0 0 0.21486 1 30130 30130 5.2307 4.437 1 + 33014 24819 22122 22137 32586 32586 -0.16820405126452442 PEPEKLVPL 9 Unmodified _PEPEKLVPL_ 0 0 0 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 341.1812744140625 3 341.202459 1020.58555 0.24304 8.2926E-05 -0.44737 -0.00015264 -0.20432 -6.9716E-05 341.20219328491527 65.657 0.83948 62.199 61.926 62.765 -3.4581 62 23 4 0 0 0 0.46598 1 12387 12387 1.2148 1.2148 1 11016000 + 33015 17121 22123 22138 32587 32587 0.07607797762852897 PEPEKLVPL 9 Unmodified _PEPEKLVPL_ 0 0 0 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 341.202459 1020.58555 -0.6809 -0.00023232 0.56824 0.00019389 -0.11265 -3.8438E-05 341.20257463419193 62.421 0.7663 62.421 62.073 62.839 0 0.19142 0.0005497 NaN 1.2148 58 21 4 NaN NaN NaN NaN 0 NaN NaN 0 18777000 + 33016 17121 22123 22138 0.07607797762852897 PEPLESLVPT 10 Unmodified _PEPLESLVPT_ 0 0 0 REV__ENSG00000106624|ENST00000223357|AEBP1 REV__ENSG00000106624|ENST00000223357|AEBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2620239257812 2 541.292422 1080.57029 -1.5242 -0.00082503 -0.72192 -0.00039077 -2.2461 -0.0012158 541.2920039330131 13.904 0.20855 12.693 12.576 12.784 -1.2106 12 5 3 0 0 0 0.91149 1 1779 1779 6.7232 0 1 1091300 + 33017 15059 22124 22139 32588 32588 0.03322886175010353 PEPLPVQTSAC 11 Unmodified _PEPLPVQTSAC_ 0 0 0 REV__ENST00000609111.1_1_10:88728383-88728773:-|nuORF REV__ENST00000609111.1_1_10:88728383-88728773:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21710205078125 3 381.190113 1140.54851 NaN NaN NaN NaN NaN NaN NaN 142.38 1 137.49 136.99 137.99 -4.8982 0 0 0 0.22632 1 27473 27473 0.172 0.098736 1 + 33018 23483 22125 22140 32589 32589 -0.016142418451863705 PEPQDLLPW 9 Unmodified _PEPQDLLPW_ 0 0 0 ENSG00000179300|ENST00000321110|RTL3 ENSG00000179300|ENST00000321110|RTL3 ENSG00000179300|ENST00000321110|RTL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.779541015625 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 13.58 1 12.407 11.907 12.907 -1.173 0 0 0 0.23508 1 1774 1774 4.756 0 1 33019 6623 22126 22141 32590 32590 0.0013803672338781325 PEPQTAEHVP 10 Unmodified _PEPQTAEHVP_ 0 0 0 REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 369.18206787109375 3 368.848856 1103.52474 0.41212 0.00015201 0.12633 4.6595E-05 0.53845 0.00019861 368.8487808831438 22.481 1.5007 21.007 20.052 21.553 -1.4742 56 42 2 0 0 0 0.42762 1 3939 3939 10.151 0 1 894120 + 33020 24110 22127 22142 32591 32591 -0.022883392873836783 PEPQTAEHVP 10 Unmodified _PEPQTAEHVP_ 0 0 0 REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 368.848856 1103.52474 -0.2134 -7.8714E-05 1.37 0.00050532 1.1566 0.00042661 368.84931529888655 20.797 1.6376 20.797 19.725 21.362 0 -0.13848 4.9033E-06 NaN 10.151 96 46 3 NaN NaN NaN NaN 0 NaN NaN 0 791340 + 33021 24110 22127 22142 -0.022883392873836783 PEPQTAEHVP 10 Unmodified _PEPQTAEHVP_ 0 0 0 REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 368.848856 1103.52474 0.41212 0.00015201 0.12633 4.6595E-05 0.53845 0.00019861 368.8487808831438 22.481 1.5007 21.007 20.052 21.553 -1.4742 0.071401 -0.0013713 NaN 10.151 56 42 2 NaN NaN NaN NaN 0 NaN NaN 0 894120 + 33022 24110 22127 22142 -0.022883392873836783 PEPQTAEHVP 10 Unmodified _PEPQTAEHVP_ 0 0 0 REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 368.848856 1103.52474 -0.12539 -4.6251E-05 1.3609 0.00050196 1.2355 0.00045571 368.849367448348 22.462 1.3627 21.008 19.933 21.296 -1.4535 0.072847 -5.1861E-06 NaN 10.151 91 38 3 NaN NaN NaN NaN 0 NaN NaN 0 1008700 + 33023 24110 22127 22142 -0.022883392873836783 PEPQTAEHVP 10 Unmodified _PEPQTAEHVP_ 0 0 0 REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 REV__nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 368.848856 1103.52474 -1.2211 -0.00045042 2.0935 0.0007722 0.8724 0.00032178 368.8494635335105 22.718 1.2703 20.93 20.155 21.426 -1.7886 -0.0057669 0.00080555 NaN 10.151 75 36 3 NaN NaN NaN NaN 0 NaN NaN 0 882420 + 33024 24110 22127 22142 -0.022883392873836783 PEPSADESP 9 Unmodified _PEPSADESP_ 0 0 0 NKX2-2|p.D124Tfs*60|1|0.43|ENSG00000125820|chr20:21512375-21512375|C/-|frameshift_variant;ENSG00000125820|ENST00000377142|NKX2-2 NKX2-2|p.D124Tfs*60|1|0.43|ENSG00000125820|chr20:21512375-21512375|C/-|frameshift_variant NKX2-2|p.D124Tfs*60|1|0.43|ENSG00000125820|chr20:21512375-21512375|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2431335449219 2 464.698355 927.382156 -0.096274 -4.4739E-05 1.8769 0.00087218 1.7806 0.00082744 464.6990228827503 59.747 0.2812 56.814 56.608 56.889 -2.9333 10 7 2 0 0 0 0.74655 1 11485 11485 6.7232 3.1267 1 791660 33025 3394 22128 22143 32592 32592 -0.08443971749420598 PEPTVPQVAE 10 Unmodified _PEPTVPQVAE_ 0 0 0 REV__SEMA5B|p.Q905Rfs*147|1|0.47|ENSG00000082684|chr3:122912855-122912855|G/-|frameshift_variant REV__SEMA5B|p.Q905Rfs*147|1|0.47|ENSG00000082684|chr3:122912855-122912855|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2745361328125 2 533.774396 1065.53424 0.24691 0.00013179 -0.73755 -0.00039369 -0.49064 -0.00026189 534.2764510153205 117.34 0.56242 112.86 112.56 113.12 -4.486 33 15 3 0 0 0 0.75233 1 23144 23144 22.736 0 1 1630400 + 33026 14442 22129 22144 32593 32593 0.004094289981367183 PEPYKDGPHY 10 Unmodified _PEPYKDGPHY_ 0 0 0 REV__ENSG00000123364|ENST00000243056|HOXC13 REV__ENSG00000123364|ENST00000243056|HOXC13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.281982421875 2 601.77747 1201.54039 0.48548 0.00029215 2.8654 0.0017244 3.3509 0.0020165 602.281285619371 150.82 0.17538 145.6 145.53 145.71 -5.2193 5 4 2 0 0 0 0.744 1 29243 29243 6.7232 2.3939 1 846590 + 33027 15725 22130 22145 32594 32594 -0.052320527703159314 PEPYKDGPHY 10 Unmodified _PEPYKDGPHY_ 0 0 0 REV__ENSG00000123364|ENST00000243056|HOXC13 REV__ENSG00000123364|ENST00000243056|HOXC13 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 601.77747 1201.54039 0.48548 0.00029215 2.8654 0.0017244 3.3509 0.0020165 602.281285619371 150.82 0.17538 145.6 145.53 145.71 -5.2193 0 0 NaN 6.7232 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 846590 + 33028 15725 22130 22145 -0.052320527703159314 PEQALLRRHPR 11 Unmodified _PEQALLRRHPR_ 0 0 0 DIS3L2|p.P612Rfs*33|1|0.4|ENSG00000144535|chr2:232329903-232329903|C/-|frameshift_variant DIS3L2|p.P612Rfs*33|1|0.4|ENSG00000144535|chr2:232329903-232329903|C/-|frameshift_variant DIS3L2|p.P612Rfs*33|1|0.4|ENSG00000144535|chr2:232329903-232329903|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2301025390625 3 458.26886 1371.78475 -0.14259 -6.5344E-05 0.38714 0.00017742 0.24456 0.00011207 458.2690691469029 22.83 0.56391 21.376 21.083 21.647 -1.4535 28 15 2 0 0 0 0.96157 1 3624 3624 2.6312 0 1 671690 33029 839 22131 22146 32595 32595 0.11372870834111382 PEQATVPSS 9 Unmodified _PEQATVPSS_ 0 0 0 REV__ENSG00000165757|ENST00000375377|JCAD REV__ENSG00000165757|ENST00000375377|JCAD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22442626953125 2 458.224539 914.434526 -0.083026 -3.8044E-05 -0.64929 -0.00029752 -0.73231 -0.00033556 458.22417185333103 49.095 1.2554 46.089 45.518 46.774 -3.0068 93 35 4 0 0 0 0.13708 1 8951 8951 46.021 0 1 32412000 + 33030 17800 22132 22147 32596 32596 -0.0261138861579866 PEQEATPFYY 10 Unmodified _PEQEATPFYY_ 0 0 0 REV__ENSG00000186767|ENST00000374884|SPIN4 REV__ENSG00000186767|ENST00000374884|SPIN4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7769165039062 2 622.777136 1243.53972 0.28881 0.00017986 0.65887 0.00041033 0.94768 0.00059019 623.2791607233677 134.92 0.20944 130.05 130 130.21 -4.8726 6 5 2 0 0 0 0.90091 1 25926 25926 3.2813 0 1 2493600 + 33031 19052 22133 22148 32597 32597 -0.07230892210054662 PEQEEEYEQ 9 Unmodified _PEQEEEYEQ_ 0 0 0 REV__nc|ENSG00000179119|Q68D10-2|SPTY2D1 REV__nc|ENSG00000179119|Q68D10-2|SPTY2D1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2596435546875 2 590.735665 1179.45678 0.48876 0.00028873 -0.057318 -3.386E-05 0.43144 0.00025487 590.7367418941293 135.99 0.14633 131.35 131.25 131.39 -4.6399 5 3 2 0 0 0 0.85111 1 26810 26810 0.35063 0 1 1160100 + 33032 18640 22134 22149 32598 32598 -0.12577253728704818 PEQFQTYL 8 Unmodified _PEQFQTYL_ 0 0 0 REV__ENSG00000136404|ENST00000322019|TM6SF1 REV__ENSG00000136404|ENST00000322019|TM6SF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.2274475097656 3 342.502797 1024.48656 -0.60833 -0.00020836 0.77272 0.00026466 0.16439 5.6304E-05 342.503003512386 77.558 0.7328 73.899 73.503 74.236 -3.6588 27 20 2 0 0 0 1.027 1 14702 14702 0.30703 0.30703 1 728600 + 33033 16329 22135 22150 32599 32599 -0.024702252020460946 PEQFQTYL 8 Unmodified _PEQFQTYL_ 0 0 0 REV__ENSG00000136404|ENST00000322019|TM6SF1 REV__ENSG00000136404|ENST00000322019|TM6SF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 342.502797 1024.48656 -0.28725 -9.8385E-05 0.47209 0.00016169 0.18483 6.3306E-05 342.50288794178226 74.145 0.90504 74.145 73.628 74.533 0 0.12292 -0.00015064 NaN 0.30703 33 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1511800 + 33034 16329 22135 22150 -0.024702252020460946 PEQGDEEDEE 10 Unmodified _PEQGDEEDEE_ 0 0 0 REV__ENSG00000188070|ENST00000433688|ZFTA REV__ENSG00000188070|ENST00000433688|ZFTA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2660522460938 2 588.712387 1175.41022 0.13539 7.9705E-05 -1.1571 -0.00068117 -1.0217 -0.00060147 588.711675392112 87.136 0.99065 83.407 82.977 83.968 -3.7289 77 27 4 0 0 0 0.71778 1 16627 16627 9.3831 0.63772 1 28259000 + 33035 19131 22136 22151 32600 32600 -0.1704673835063204 PEQGDEEDEE 10 Unmodified _PEQGDEEDEE_ 0 0 0 REV__ENSG00000188070|ENST00000433688|ZFTA REV__ENSG00000188070|ENST00000433688|ZFTA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 588.712387 1175.41022 0.33971 0.00019999 -1.4049 -0.00082707 -1.0652 -0.00062708 588.7115122849468 87.263 0.89758 83.536 83.149 84.047 -3.727 0.065758 -0.0003707 NaN 9.3831 64 24 4 NaN NaN NaN NaN 0 NaN NaN 0 17733000 + 33036 19131 22136 22151 -0.1704673835063204 PEQIEKIWLWL 11 Unmodified _PEQIEKIWLWL_ 0 0 0 PDE1C|p.R30W|1|0.17|ENSG00000154678|chr7:32070306-32070306|G/A|missense_variant PDE1C|p.R30W|1|0.17|ENSG00000154678|chr7:32070306-32070306|G/A|missense_variant PDE1C|p.R30W|1|0.17|ENSG00000154678|chr7:32070306-32070306|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 727.8310546875 2 727.905745 1453.79694 NaN NaN NaN NaN NaN NaN NaN 173.12 1 173.12 172.62 173.62 0 0 0 0 0.23476 1 35781 35781 4.5289 1.5336 1 33037 12767 22137 22152 32601 32601 0.088190497339383 PEQKSSLNY 9 Unmodified _PEQKSSLNY_ 0 0 0 ENSG00000097096|ENST00000341460|SYDE2 ENSG00000097096|ENST00000341460|SYDE2 ENSG00000097096|ENST00000341460|SYDE2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2620239257812 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 174.82 1 169.94 169.44 170.44 -4.8845 0 0 0 0.23508 1 34740 34740 7.2892 0 1 33038 1880 22138 22153 32602 32602 -0.015837416616705013 PEQKTFFQA 9 Unmodified _PEQKTFFQA_ 0 0 0 nc|ENSG00000122678|Q9NP87-2|POLM;ENSG00000122678|ENST00000242248|POLM nc|ENSG00000122678|Q9NP87-2|POLM nc|ENSG00000122678|Q9NP87-2|POLM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77490234375 2 548.277106 1094.53966 -0.37226 -0.0002041 -2.456 -0.0013466 -2.8282 -0.0015507 548.2755875194127 18.065 0.50677 16.793 16.593 17.099 -1.2722 18 14 2 0 0 0 0.87511 1 2746 2746 7.2892 0.56607 1 252850 33039 3238 22139 22154 32603 32603 -0.003828474193596776 PEQKTFFQA 9 Unmodified _PEQKTFFQA_ 0 0 0 nc|ENSG00000122678|Q9NP87-2|POLM;ENSG00000122678|ENST00000242248|POLM nc|ENSG00000122678|Q9NP87-2|POLM nc|ENSG00000122678|Q9NP87-2|POLM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 548.277106 1094.53966 0.080788 4.4294E-05 -3.4696 -0.0019023 -3.3888 -0.001858 548.2753639002874 18.165 0.35324 16.854 16.649 17.002 -1.3109 0.030324 -0.000301 NaN 7.2892 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 367400 33040 3238 22139 22154 -0.003828474193596776 PEQRIIKF 8 Unmodified _PEQRIIKF_ 0 0 0 REV__ENSG00000134760|ENST00000257192|DSG1 REV__ENSG00000134760|ENST00000257192|DSG1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.12353515625 3 344.206315 1029.59712 NaN NaN NaN NaN NaN NaN NaN 106.9 1 102.64 102.14 103.14 -4.2638 0 0 0 0.21486 1 21045 21045 1.6526 0 1 + 33041 16225 22140 22155 32604 32604 0.08350039576839663 PERARPPP 8 Unmodified _PERARPPP_ 0 0 0 ENSG00000176058|ENST00000409012|TPRN ENSG00000176058|ENST00000409012|TPRN ENSG00000176058|ENST00000409012|TPRN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24737548828125 2 460.259051 918.503549 NaN NaN NaN NaN NaN NaN NaN 29.05 1 27.225 26.725 27.725 -1.8252 0 0 0 0.21486 1 4928 4928 14.582 5.9884 1 33042 6445 22141 22156 32605 32605 0.04103740194409511 PEREAKDPK 9 Unmodified _PEREAKDPK_ 0 0 0 REV__IFT122|p.L800P|1|0.19|ENSG00000163913|chr3:129502734-129502734|T/C|missense_variant REV__IFT122|p.L800P|1|0.19|ENSG00000163913|chr3:129502734-129502734|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5598449707031 3 357.192734 1068.55637 -0.17674 -6.3129E-05 -0.77496 -0.00027681 -0.95169 -0.00033994 357.1923545474518 21.474 0.59149 20.09 19.757 20.348 -1.3847 31 16 3 0 0 0 0.88054 1 3356 3356 0.18151 0 1 1895500 + 33043 23647 22142 22157 32606 32606 0.02483653466561009 PEREEAKKYEY 11 Unmodified _PEREEAKKYEY_ 0 0 0 REV__IPO8|p.I308Ffs*2|1|0.28|ENSG00000133704|chr12:30671084-30671084|T/-|frameshift_variant REV__IPO8|p.I308Ffs*2|1|0.28|ENSG00000133704|chr12:30671084-30671084|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2359619140625 3 481.236779 1440.68851 NaN NaN NaN NaN NaN NaN NaN 49.127 1 46.128 45.628 46.628 -2.999 0 0 0 0.22632 1 8978 8978 0.026206 0 1 + 33044 16174 22143 22158 32607 32607 -0.014207863071078464 PERERYKIK 9 Unmodified _PERERYKIK_ 0 0 0 ENST00000524197.1_1_6:72926891-72975792:+|nuORF ENST00000524197.1_1_6:72926891-72975792:+|nuORF ENST00000524197.1_1_6:72926891-72975792:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 609.8886108398438 2 609.851304 1217.68806 NaN NaN NaN NaN NaN NaN NaN 170.93 1 166.06 165.56 166.56 -4.873 0 0 0 0.23508 1 33852 33852 7.9102 1.187 1 33045 10876 22144 22159 32608 32608 0.08791883554295055 PERHDRRL 8 Unmodified _PERHDRRL_ 0 0 0 ENSG00000186973|ENST00000335282|CFAP144 ENSG00000186973|ENST00000335282|CFAP144 ENSG00000186973|ENST00000335282|CFAP144 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201904296875 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 148.62 1 148.62 148.12 149.12 0 0 0 0 0.21486 1 29745 29745 0.40072 0 1 33046 7086 22145 22160 32609 32609 0.04348717374705302 PERINPRNV 9 Unmodified _PERINPRNV_ 0 0 0 REV__nc|ENSG00000156587|O14933-2|UBE2L6 REV__nc|ENSG00000156587|O14933-2|UBE2L6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7892456054688 2 547.806897 1093.59924 0.22862 0.00012524 -0.21279 -0.00011657 0.015833 8.6735E-06 548.3094207152378 140.4 0.18613 135.75 135.69 135.88 -4.6493 5 4 2 0 0 0 0.84208 1 27744 27744 7.2892 0.56607 1 1119200 + 33047 17264 22146 22161 32610 32610 0.056184683146511816 PERKRQWQYEL 11 Unmodified _PERKRQWQYEL_ 0 0 0 KCTD8|p.S465Y|1|0.06|ENSG00000183783|chr4:44174818-44174818|G/T|missense_variant KCTD8|p.S465Y|1|0.06|ENSG00000183783|chr4:44174818-44174818|G/T|missense_variant KCTD8|p.S465Y|1|0.06|ENSG00000183783|chr4:44174818-44174818|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 511.75042724609375 3 511.603797 1531.78956 NaN NaN NaN NaN NaN NaN NaN 163.34 1 158.29 157.79 158.79 -5.0446 0 0 0 0.23698 1 31779 31779 0.92553 0.47102 1 33048 11987 22147 22162 32611 32611 0.04493710186216049 PERQDSAI 8 Unmodified _PERQDSAI_ 0 0 0 nc|ENSG00000176845|Q641Q3-2|METRNL;METRNL|p.L303*|1|0.41|ENSG00000176845|chr17:83094541-83094541|G/-|frameshift_variant;ENSG00000176845|ENST00000320095|METRNL nc|ENSG00000176845|Q641Q3-2|METRNL nc|ENSG00000176845|Q641Q3-2|METRNL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2305603027344 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 97.429 1 93.51 93.01 94.01 -3.9194 0 0 0 0.23366 1 18696 18696 0.12286 0 1 33049 6483 22148 22163 32612 32612 -0.0148856652166387 PERRPQEAL 9 Unmodified _PERRPQEAL_ 0 0 0 REV__ENST00000339514.8_1_2:192110230-192110338:+|nuORF REV__ENST00000339514.8_1_2:192110230-192110338:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7763671875 2 548.298904 1094.58326 -0.03869 -2.1214E-05 -0.202 -0.00011076 -0.24069 -0.00013197 548.2988703707962 23.229 0.34489 21.775 21.543 21.888 -1.4535 20 9 3 0 0 0 0.47976 1 3724 3724 0.029283 0 1 1456200 + 33050 20694 22149 22164 32613 32613 0.03974762077768901 PERRRRKRRRR 11 Unmodified _PERRRRKRRRR_ 0 0 0 REV__ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant REV__ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3665161132812 2 811.512163 1621.00977 NaN NaN NaN NaN NaN NaN NaN 172.58 1 172.58 172.08 173.08 0 0 0 0 0.23698 1 35632 35632 1.1933 0.92432 1 + 33051 25577 22150 22165 32614 32614 0.22410838147652612 PERRRRKRRRR 11 Unmodified _PERRRRKRRRR_ 0 0 0 REV__ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant REV__ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3900146484375 2 811.512163 1621.00977 NaN NaN NaN NaN NaN NaN NaN 173.65 1 173.65 173.15 174.15 0 0 0 0 0.23698 1 35919 35919 1.3295 1.0225 1 + 33052 25577 22150 22165 32615 32615 0.22410838147652612 PERRRRKRRRR 11 Unmodified _PERRRRKRRRR_ 0 0 0 REV__ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant REV__ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.378173828125 2 811.512163 1621.00977 NaN NaN NaN NaN NaN NaN NaN 174.14 1 169.26 168.76 169.76 -4.8845 0 0 0 0.22632 1 34593 34593 0.00056442 0 1 + 33053 25577 22150 22165 32616 32616 0.22410838147652612 PERRRRKRRRR 11 Unmodified _PERRRRKRRRR_ 0 0 0 REV__ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant REV__ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3904418945312 2 811.512163 1621.00977 NaN NaN NaN NaN NaN NaN NaN 171.68 1 166.81 166.31 167.31 -4.873 0 0 0 0.23698 1 34035 34035 0.30703 0.03801 1 + 33054 25577 22150 22165 32617 32617 0.22410838147652612 PERRSKGCQA 10 Unmodified _PERRSKGCQA_ 0 0 0 REV__ENST00000199448.8_2_7:37960327-37960474:+|nuORF REV__ENST00000199448.8_2_7:37960327-37960474:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.558349609375 3 377.861101 1130.56147 -0.23992 -9.0655E-05 0.53886 0.00020361 0.29894 0.00011296 377.86125417239276 33.537 0.52328 31.219 30.938 31.461 -2.3175 41 14 4 0 0 0 0.51803 1 6078 6078 0.26539 0.25212 1 5087200 + 33055 19991 22151 22166 32618 32618 0.001416340575360664 PERRSKGCQA 10 Unmodified _PERRSKGCQA_ 0 0 0 REV__ENST00000199448.8_2_7:37960327-37960474:+|nuORF REV__ENST00000199448.8_2_7:37960327-37960474:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 377.861101 1130.56147 -0.12612 -4.7654E-05 0.45402 0.00017156 0.32791 0.0001239 377.8612644676406 31.148 0.52748 31.148 30.859 31.386 0 -0.041553 -3.1076E-06 NaN 0.26539 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5524700 + 33056 19991 22151 22166 0.001416340575360664 PERRSKGCQA 10 Unmodified _PERRSKGCQA_ 0 0 0 REV__ENST00000199448.8_2_7:37960327-37960474:+|nuORF REV__ENST00000199448.8_2_7:37960327-37960474:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 377.861101 1130.56147 -0.23992 -9.0655E-05 0.53886 0.00020361 0.29894 0.00011296 377.86125417239276 33.537 0.52328 31.219 30.938 31.461 -2.3175 0.029772 9.3059E-05 NaN 0.26539 41 14 4 NaN NaN NaN NaN 0 NaN NaN 0 5087200 + 33057 19991 22151 22166 0.001416340575360664 PERRSKGCQA 10 Unmodified _PERRSKGCQA_ 0 0 0 REV__ENST00000199448.8_2_7:37960327-37960474:+|nuORF REV__ENST00000199448.8_2_7:37960327-37960474:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 377.861101 1130.56147 0.22812 8.6199E-05 0.10518 3.9743E-05 0.3333 0.00012594 377.8610886723923 33.358 0.52427 31.211 30.937 31.461 -2.1468 0.021847 -0.00039855 NaN 0.26539 40 14 4 NaN NaN NaN NaN 0 NaN NaN 0 5718200 + 33058 19991 22151 22166 0.001416340575360664 PERRSKGCQA 10 Unmodified _PERRSKGCQA_ 0 0 0 REV__ENST00000199448.8_2_7:37960327-37960474:+|nuORF REV__ENST00000199448.8_2_7:37960327-37960474:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 377.861101 1130.56147 -0.2745 -0.00010372 0.73327 0.00027707 0.45877 0.00017335 377.8612888849302 33.395 0.58415 31.179 30.874 31.458 -2.2158 -0.010066 0.00031344 NaN 0.26539 43 16 4 NaN NaN NaN NaN 0 NaN NaN 0 4907600 + 33059 19991 22151 22166 0.001416340575360664 PERTKPDFP 9 Unmodified _PERTKPDFP_ 0 0 0 ENSG00000100583|ENST00000216471|SAMD15;nc|ENSG00000100583|Q9P1V8-2|SAMD15 ENSG00000100583|ENST00000216471|SAMD15 ENSG00000100583|ENST00000216471|SAMD15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7714233398438 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 127.72 1 127.72 127.22 128.22 0 0 0 0 0.23508 1 25215 25215 10.074 1.4806 1 33060 1992 22152 22167 32619 32619 0.011205549548776617 PERYTSRYHLK 11 Unmodified _PERYTSRYHLK_ 0 0 0 KCTD12|p.Y271H|1|0.35|ENSG00000178695|chr13:76885338-76885338|A/G|missense_variant KCTD12|p.Y271H|1|0.35|ENSG00000178695|chr13:76885338-76885338|A/G|missense_variant KCTD12|p.Y271H|1|0.35|ENSG00000178695|chr13:76885338-76885338|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 724.84228515625 2 725.3835 1448.75245 0.72457 0.00052559 -2.8666 -0.0020794 -2.1421 -0.0015538 725.3817861319915 172.55 0.16968 167.67 167.55 167.72 -4.881 5 4 2 0 0 0 0.88907 1 34249 34249 0.172 0 1 12748000 33061 11985 22153 22168 32620 32620 0.04602038640450701 PESATLSEK 9 Unmodified _PESATLSEK_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 482.7594299316406 2 481.245472 960.476391 0.19881 9.5676E-05 -0.36213 -0.00017427 -0.16332 -7.8598E-05 481.2452666262255 99.809 1.515 95.819 95.377 96.892 -3.9895 145 43 5 0 0 0 0.058839 1 19192 19192 51.765 0 1 182930000 33062 4041 22154 22169 32621 32621 -0.005428329272831434 PESDDPDE 8 Unmodified _PESDDPDE_ 0 0 0 REV__KMT2B|p.S1092P|1|0.38|ENSG00000272333|chr19:35723947-35723947|T/C|missense_variant REV__KMT2B|p.S1092P|1|0.38|ENSG00000272333|chr19:35723947-35723947|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.0170593261719 3 301.778655 902.314136 -0.43664 -0.00013177 -1.826 -0.00055104 -2.2626 -0.00068281 301.7782480104095 28.019 0.55172 28.019 27.801 28.352 0 21 15 2 0 0 0 1.0277 1 4988 4988 1.6526 0 1 495180 + 33063 23730 22155 22170 32622 32622 -0.14092841400088219 PESDQARP 8 Unmodified _PESDQARP_ 0 0 0 REV__nc|ENSG00000079308|Q9HBL0-1|TNS1 REV__nc|ENSG00000079308|Q9HBL0-1|TNS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.11328125 2 450.214506 898.414459 NaN NaN NaN NaN NaN NaN NaN 27.837 1 25.881 25.381 26.381 -1.9561 0 0 0 0.21452 1 4960 4960 13.508 0 1 + 33064 14394 22156 22171 32623 32623 -0.03881139555767277 PESDQARP 8 Unmodified _PESDQARP_ 0 0 0 REV__nc|ENSG00000079308|Q9HBL0-1|TNS1 REV__nc|ENSG00000079308|Q9HBL0-1|TNS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.1169738769531 2 450.214506 898.414459 NaN NaN NaN NaN NaN NaN NaN 28.012 1 26.016 25.516 26.516 -1.9962 0 0 0 0.2074 1 4710 4710 19.439 0 1 + 33065 14394 22156 22171 32624 32624 -0.03881139555767277 PESEDDDSGD 10 Unmodified _PESEDDDSGD_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1;ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2808227539062 2 533.17818 1064.34181 0.10513 5.6051E-05 0.93104 0.00049641 1.0362 0.00055246 533.6791639637462 137 0.16808 137 136.93 137.1 0 5 4 2 0 0 0 0.91149 1 27152 27152 3.5965 2.8029 1 3733200 33066 5514 22157 22172 32625 32625 -0.18778982930507482 PESGSPNRL 9 Unmodified _PESGSPNRL_ 0 0 0 REV__ENST00000368921.4_1_1:151032096-151032267:+|nuORF REV__ENST00000368921.4_1_1:151032096-151032267:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7415771484375 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 60.824 1 57.462 56.962 57.962 -3.3619 0 0 0 0.21065 1 11332 11332 20.454 1.1966 1 + 33067 20951 22158 22173 32626 32626 -0.007208776303286868 PESGWDRL 8 Unmodified _PESGWDRL_ 0 0 0 ENSG00000113845|ENST00000494664|TIMMDC1 ENSG00000113845|ENST00000494664|TIMMDC1 ENSG00000113845|ENST00000494664|TIMMDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2448425292969 2 480.232699 958.450845 0.22755 0.00010928 -0.046688 -2.2421E-05 0.18086 8.6854E-05 480.2326403844647 43.611 0.7974 43.611 43.19 43.987 0 52 22 3 0 0 0 8448 1 8120 8120 10.074 0 1 7938400 33068 2767 22159 22174 32627 32627 -0.030042626590670807 PESKVTMRFWI 11 Unmodified _PESKVTMRFWI_ 0 0 0 tr|U7T2E8|U7T2E8_FUSNUPhospho-N-acetylmuramoyl-pentapeptide-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mraYPE=3SV=1 tr|U7T2E8|U7T2E8_FUSNUPhospho-N-acetylmuramoyl-pentapeptide-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mraYPE=3SV=1 tr|U7T2E8|U7T2E8_FUSNUPhospho-N-acetylmuramoyl-pentapeptide-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mraYPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2495422363281 3 465.248074 1392.72239 NaN NaN NaN NaN NaN NaN NaN 101.33 1 97.038 96.538 97.538 -4.297 0 0 0 0.22632 1 19391 19391 0.172 0 1 33069 26360 22160 22175 32628 32628 0.04173963650919177 PESPHLLELG 10 Unmodified _PESPHLLELG_ 0 0 0 REV__ENST00000421108.1_1_17:18419857-18420688:-|nuORF REV__ENST00000421108.1_1_17:18419857-18420688:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7691650390625 2 546.290214 1090.56587 0.015121 8.2604E-06 -0.18737 -0.00010236 -0.17225 -9.41E-05 546.2903185990069 112.84 0.84883 108.39 107.91 108.76 -4.4539 52 23 3 0 0 0 0.59928 1 22227 22227 19.257 6.7254 1 4216200 + 33070 21508 22161 22176 32629 32629 0.02421421752092101 PESPHLLELG 10 Unmodified _PESPHLLELG_ 0 0 0 REV__ENST00000421108.1_1_17:18419857-18420688:-|nuORF REV__ENST00000421108.1_1_17:18419857-18420688:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.290214 1090.56587 0.46868 0.00025603 -0.2432 -0.00013286 0.22548 0.00012318 546.2900217441893 108.45 0.84091 108.45 107.93 108.77 0 0.11789 7.6088E-05 NaN 19.257 56 23 3 NaN NaN NaN NaN 0 NaN NaN 0 4627100 + 33071 21508 22161 22176 0.02421421752092101 PESPHLLELG 10 Unmodified _PESPHLLELG_ 0 0 0 REV__ENST00000421108.1_1_17:18419857-18420688:-|nuORF REV__ENST00000421108.1_1_17:18419857-18420688:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.290214 1090.56587 0.015121 8.2604E-06 -0.18737 -0.00010236 -0.17225 -9.41E-05 546.2903185990069 112.84 0.84883 108.39 107.91 108.76 -4.4539 0.053327 0.00013708 NaN 19.257 52 23 3 NaN NaN NaN NaN 0 NaN NaN 0 4216200 + 33072 21508 22161 22176 0.02421421752092101 PESPHLLELG 10 Unmodified _PESPHLLELG_ 0 0 0 REV__ENST00000421108.1_1_17:18419857-18420688:-|nuORF REV__ENST00000421108.1_1_17:18419857-18420688:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.290214 1090.56587 0.040156 2.1937E-05 0.11293 6.169E-05 0.15308 8.3627E-05 546.2903469783212 112.85 0.88319 108.33 107.87 108.75 -4.5259 -0.0052533 0.00046518 NaN 19.257 57 24 3 NaN NaN NaN NaN 0 NaN NaN 0 3377000 + 33073 21508 22161 22176 0.02421421752092101 PESPHLLELG 10 Unmodified _PESPHLLELG_ 0 0 0 REV__ENST00000421108.1_1_17:18419857-18420688:-|nuORF REV__ENST00000421108.1_1_17:18419857-18420688:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.290214 1090.56587 0.6625 0.00036192 -0.75459 -0.00041223 -0.092095 -5.0311E-05 546.289850264188 112.44 0.90296 108.17 107.8 108.7 -4.2725 -0.16597 -0.00048265 NaN 19.257 60 25 3 NaN NaN NaN NaN 0 NaN NaN 0 3772300 + 33074 21508 22161 22176 0.02421421752092101 PESQFLELQ 9 Unmodified _PESQFLELQ_ 0 0 0 ENSG00000205108|ENST00000378788|FAM205A ENSG00000205108|ENST00000378788|FAM205A ENSG00000205108|ENST00000378788|FAM205A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7672729492188 2 545.774396 1089.53424 0.26064 0.00014225 -0.0988 -5.3923E-05 0.16184 8.8328E-05 545.7742667493426 89.871 1.0853 86.094 85.592 86.677 -3.7779 101 30 5 0 0 0 0.31714 1 17193 17193 30.637 0 1 33541000 33075 7629 22162 22177 32630 32630 -0.006945710018726459 PESQFLELQ 9 Unmodified _PESQFLELQ_ 0 0 0 ENSG00000205108|ENST00000378788|FAM205A ENSG00000205108|ENST00000378788|FAM205A ENSG00000205108|ENST00000378788|FAM205A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 545.774396 1089.53424 0.30143 0.00016451 -0.224 -0.00012226 0.077425 4.2257E-05 545.7742015493426 86.042 1.1285 86.042 85.575 86.703 0 -0.026489 -0.00013129 NaN 30.637 94 31 4 NaN NaN NaN NaN 0 NaN NaN 0 36929000 33076 7629 22162 22177 -0.006945710018726459 PESQFLELQ 9 Unmodified _PESQFLELQ_ 0 0 0 ENSG00000205108|ENST00000378788|FAM205A ENSG00000205108|ENST00000378788|FAM205A ENSG00000205108|ENST00000378788|FAM205A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 545.774396 1089.53424 0.13102 7.1505E-05 0.077682 4.2397E-05 0.2087 0.0001139 545.7743574860226 89.926 1.0349 86.066 85.616 86.65 -3.8595 -0.0025389 0.00019801 NaN 30.637 93 28 5 NaN NaN NaN NaN 0 NaN NaN 0 33816000 33077 7629 22162 22177 -0.006945710018726459 PESQFLELQ 9 Unmodified _PESQFLELQ_ 0 0 0 ENSG00000205108|ENST00000378788|FAM205A ENSG00000205108|ENST00000378788|FAM205A ENSG00000205108|ENST00000378788|FAM205A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 545.774396 1089.53424 0.38788 0.0002117 -0.14025 -7.6546E-05 0.24763 0.00013515 545.7742091522175 90.117 1.0283 86.073 85.587 86.615 -4.0443 0.0042031 -3.9873E-05 NaN 30.637 91 28 5 NaN NaN NaN NaN 0 NaN NaN 0 30003000 33078 7629 22162 22177 -0.006945710018726459 PETFRQQFRQF 11 Unmodified _PETFRQQFRQF_ 0 0 0 ENST00000586585.1_1_18:32953773-32954277:-|nuORF;nc|ENSG00000186496|Q96N95-2|ZNF396;ZNF396|p.F323*|1|0.54|ENSG00000186496|chr18:35369254-35369255|AA/-|frameshift_variant;nc|ENSG00000186496|Q96N95-3|ZNF396;ENSG00000186496|ENST00000589332|ZNF396 ENST00000586585.1_1_18:32953773-32954277:-|nuORF ENST00000586585.1_1_18:32953773-32954277:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3880615234375 2 742.375675 1482.7368 NaN NaN NaN NaN NaN NaN NaN 172.44 1 167.65 167.15 168.15 -4.7898 0 0 0 0.22943 1 35129 35129 8.7454 1.6437 1 33079 7062 22163 22178 32631 32631 0.014737521234110318 PETMCEMIK 9 Unmodified _PETMCEMIK_ 0 0 0 KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94;ENST00000581867.1_1_17:73491396-73492246:+|nuORF;ENST00000585105.5_1_17:73489877-73495164:+|nuORF KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.0260009765625 3 361.162401 1080.46537 -1.1527 -0.00041633 -1.2378 -0.00044703 -2.3905 -0.00086336 361.1619647934827 22.971 1.3355 21.182 20.885 22.22 -1.7886 56 38 3 0 0 0 0.84208 1 3737 3737 0.86438 0 1 1287100 33080 6534 22164 22179 32632 32632 -0.07164017889090246 PETPPPPPP 9 Unmodified _PETPPPPPP_ 0 0 0 ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;ZFHX4|p.R2647Gfs*44|1|0.25|ENSG00000091656|chr8:76854854-76854854|A/-|frameshift_variant;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.D2246*|1|0.34|ENSG00000091656|chr8:76853650-76853651|-/T|frameshift_variant;ZFHX4|p.P2056Hfs*26|1|0.19|ENSG00000091656|chr8:76853081-76853084|CCTC/-|frameshift_variant;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ZFHX4|p.I2143Nfs*7|1|0.31|ENSG00000091656|chr8:76853343-76853344|-/A|frameshift_variant;ZFHX4|p.P2057Hfs*26|2|0.17|ENSG00000091656|chr8:76853084-76853084|C/-|frameshift_variant;ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant;ENST00000360982.2_1_2:183902874-183903513:-|nuORF ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;ENST00000360982.2_1_2:183902874-183903513:-|nuORF ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.675 1 66.496 65.996 66.996 -3.1796 0 0 0 0.1964 1 13549 13549 0.073264 0 1 33081 1815;9017 22165 22180 32633 32633 0.00354693631857117 PETPYVSG 8 Unmodified _PETPYVSG_ 0 0 0 REV__ENSG00000170085|ENST00000429602|SIMC1 REV__ENSG00000170085|ENST00000429602|SIMC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2446594238281 2 425.203076 848.391599 NaN NaN NaN NaN NaN NaN NaN 19.929 1 19.929 19.429 20.429 0 0 0 0 0.20896 1 3278 3278 18.135 8.7875 1 + 33082 18140 22166 22181 32634 32634 -0.03866158673224618 PETPYVSG 8 Unmodified _PETPYVSG_ 0 0 0 REV__ENSG00000170085|ENST00000429602|SIMC1 REV__ENSG00000170085|ENST00000429602|SIMC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2441101074219 2 425.203076 848.391599 NaN NaN NaN NaN NaN NaN NaN 21.712 1 19.99 19.49 20.49 -1.7211 0 0 0 0.21486 1 3409 3409 9.3474 0 1 + 33083 18140 22166 22181 32635 32635 -0.03866158673224618 PETRVSCLPRS 11 Unmodified _PETRVSCLPRS_ 0 0 0 FAM47C|p.P200Rfs*625|3|0.21|ENSG00000198173|chrX:37009004-37009004|C/-|frameshift_variant FAM47C|p.P200Rfs*625|3|0.21|ENSG00000198173|chrX:37009004-37009004|C/-|frameshift_variant FAM47C|p.P200Rfs*625|3|0.21|ENSG00000198173|chrX:37009004-37009004|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7694091796875 2 622.824429 1243.63431 NaN NaN NaN NaN NaN NaN NaN 147.64 1 142.93 142.43 143.43 -4.7095 0 0 0 0.2321 1 29300 29300 6.6304 0.42459 1 33084 11798 22167 22182 32636 32636 0.022233430603137094 PETTTLTPT 9 Unmodified _PETTTLTPT_ 0 0 0 nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A nc|ENSG00000169894|Q02505-2|MUC3A nc|ENSG00000169894|Q02505-2|MUC3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2494201660156 2 480.747847 959.481142 0.24744 0.00011896 0.27438 0.00013191 0.52182 0.00025087 480.74774127303255 99.565 0.66653 99.565 99.267 99.934 0 36 18 3 0 0 0 0.28246 1 19505 19505 1.6919 0.47705 1 2779300 33085 6017 22168 22183 32637 32637 -0.00021948784524283838 PETVNTLL 8 Unmodified _PETVNTLL_ 0 0 0 ENSG00000127220|ENST00000247706|ABHD8 ENSG00000127220|ENST00000247706|ABHD8 ENSG00000127220|ENST00000247706|ABHD8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 444.2229919433594 2 443.74765 885.480748 0.42229 0.00018739 -0.30767 -0.00013653 0.11462 5.0862E-05 443.74747757471897 106.47 1.4955 106.47 105.88 107.37 0 130 42 5 0 0 0 0.87737 1 21094 21094 1.4551 0 1 144650000 33086 3466 22169 22184 32638 32638 0.03342676286308688 PEVATEYHGNS 11 Unmodified _PEVATEYHGNS_ 0 0 0 REV__nc|ENSG00000116678|P48357-5|LEPR REV__nc|ENSG00000116678|P48357-5|LEPR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2972412109375 2 602.267467 1202.52038 NaN NaN NaN NaN NaN NaN NaN 169.77 1 169.77 169.27 170.27 0 0 0 0 0.22943 1 34857 34857 8.7454 1.1365 1 + 33087 15489 22170 22185 32639 32639 -0.07277848500962136 PEVCCDRCCC 10 Unmodified _PEVCCDRCCC_ 0 0 0 REV__ENST00000496534.1_1_3:9799225-9799321:-|nuORF REV__ENST00000496534.1_1_3:9799225-9799321:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 566.1434326171875 2 565.681432 1129.34831 NaN NaN NaN NaN NaN NaN NaN 171.37 1 171.37 170.87 171.87 0 0 0 0 0.22588 1 35298 35298 3.5965 1.7523 1 + 33088 16192 22171 22186 32640 32640 -0.21118822372000068 PEVDDIKY 8 Unmodified _PEVDDIKY_ 0 0 0 REV__tr|U7T112|U7T112_FUSNURecombinaseRecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00766PE=3SV=1 REV__tr|U7T112|U7T112_FUSNURecombinaseRecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00766PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26556396484375 2 489.742565 977.470577 -0.28647 -0.0001403 1.0434 0.00051101 0.75696 0.00037072 489.74333159062274 84.085 0.35747 80.374 80.097 80.454 -3.7117 12 9 2 0 0 0 0.64227 1 16055 16055 19.439 1.304 1 711130 + 33089 25286 22172 22187 32641 32641 -0.019059314389664905 PEVDDIKY 8 Unmodified _PEVDDIKY_ 0 0 0 REV__tr|U7T112|U7T112_FUSNURecombinaseRecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00766PE=3SV=1 REV__tr|U7T112|U7T112_FUSNURecombinaseRecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00766PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.742565 977.470577 0.094541 4.6301E-05 -0.066126 -3.2384E-05 0.028415 1.3916E-05 489.7424779232948 83.915 0.37438 80.307 80.115 80.489 -3.6079 -0.033495 -0.00037924 NaN 19.439 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 975510 + 33090 25286 22172 22187 -0.019059314389664905 PEVEGTLE 8 Unmodified _PEVEGTLE_ 0 0 0 REV__ENST00000474140.1_1_1:3808157-3808313:-|nuORF REV__ENST00000474140.1_1_1:3808157-3808313:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21466064453125 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 135.54 1 130.65 130.15 131.15 -4.8951 0 0 0 0.21486 1 26038 26038 5.2307 0 1 + 33091 22077 22173 22188 32642 32642 -0.028581933643636148 PEVELSVST 9 Unmodified _PEVELSVST_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23272705078125 2 480.747847 959.481142 0.18554 8.9199E-05 -0.65316 -0.00031401 -0.46762 -0.00022481 480.74745718828655 75.841 1.9103 75.841 75.138 77.048 0 138 54 4 0 0 0 0.40602 1 14647 14647 25.399 2.2509 1 138950000 33092 3339 22174 22189 32643 32643 -0.0002194878450154647 PEVERRWWRRR 11 Unmodified _PEVERRWWRRR_ 0 0 0 ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7787475585938 3 542.634313 1624.88111 -0.53572 -0.0002907 -1.0541 -0.00057199 -1.5898 -0.00086269 542.6339849143684 15.775 0.27606 14.553 14.368 14.644 -1.2219 17 7 3 0 0 0 0.66313 2 2213 2213;2214 0 0 1 621670 33093 8455 22175 22190 32644;32645 32644 0.09366438394044962 PEVERRWWRRR 11 Unmodified _PEVERRWWRRR_ 0 0 0 ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 542.634313 1624.88111 0.22474 0.00012195 -1.1825 -0.00064167 -0.95776 -0.00051971 542.6336227220796 14.566 0.21002 14.566 14.457 14.667 0 0.053429 -0.00023223 NaN 0 12 5 3 NaN NaN NaN NaN 0 NaN NaN 0 641540 33094 8455 22175 22190 0.09366438394044962 PEVERRWWRRR 11 Unmodified _PEVERRWWRRR_ 0 0 0 ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 542.634313 1624.88111 -0.29967 -0.00016261 -0.95535 -0.0005184 -1.255 -0.00068102 542.6337995522229 15.635 0.27932 14.419 14.305 14.585 -1.2159 -0.09347 0.00013756 NaN 0 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1100200 33095 8455 22175 22190 0.09366438394044962 PEVFDMTCDAW 11 Unmodified _PEVFDMTCDAW_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 657.2620239257812 2 657.262481 1312.51041 NaN NaN NaN NaN NaN NaN NaN 169.14 1 164.35 163.85 164.85 -4.7898 0 0 0 0.23379 1 34238 34238 5.2969 0.39987 1 + 33096 13904 22176 22191 32646 32646 -0.13334495822164172 PEVFEEPEEV 10 Unmodified _PEVFEEPEEV_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2752075195312 2 602.274426 1202.5343 NaN NaN NaN NaN NaN NaN NaN 177.82 1 173.03 172.53 173.53 -4.7898 0 0 0 0.22588 1 36374 36374 6.2058 0 1 33097 5053;26536 22177 22192 32647 32647 -0.058866157925194784 PEVFEEPEEV 10 Unmodified _PEVFEEPEEV_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2759399414062 2 602.274426 1202.5343 NaN NaN NaN NaN NaN NaN NaN 169.93 1 165.06 164.56 165.56 -4.873 0 0 0 0.22588 1 33600 33600 6.2058 0 1 33098 5053;26536 22177 22192 32648 32648 -0.058866157925194784 PEVGATGG 8 Unmodified _PEVGATGG_ 0 0 0 ENST00000569796.1_1_16:2282158-2283271:+|nuORF ENST00000569796.1_1_16:2282158-2283271:+|nuORF ENST00000569796.1_1_16:2282158-2283271:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.8838806152344 2 344.169036 686.323519 NaN NaN NaN NaN NaN NaN NaN 88.569 1 88.569 88.069 89.069 0 0 0 0 0.23749 1 17286 17286 0.063987 0.055711 1 33099 11408 22178 22193 32649 32649 -0.03218983533213304 PEVGGLMAV 9 Unmodified _PEVGGLMAV_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2;ENST00000529624.5_3_15:28877823-28916776:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000437318.5_1_15:20588586-20648641:-|nuORF;ENST00000528584.5_1_15:28900509-28916776:+|nuORF;ENST00000530420.5_1_15:28900570-28916776:+|nuORF ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2168884277344 2 436.730946 871.447339 -0.35193 -0.0001537 0.35723 0.00015601 0.0053072 2.3178E-06 436.73104328782256 112.37 0.54298 107.92 107.63 108.17 -4.4539 23 15 2 0 0 0 0.64382 1 22089 22089 10.074 2.7847 1 1559200 33100 3540 22179 22194 32650 32650 0.006473512427419337 PEVHLLLNNVI 11 Unmodified _PEVHLLLNNVI_ 0 0 0 REV__ENSG00000007202|ENST00000528896|BLTP2 REV__ENSG00000007202|ENST00000528896|BLTP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7747192382812 2 630.869163 1259.72377 NaN NaN NaN NaN NaN NaN NaN 138.8 1 133.96 133.46 134.46 -4.8492 0 0 0 0.22943 1 26756 26756 8.7454 0.58988 1 + 33101 13884 22180 22195 32651 32651 0.10429921011314036 PEVLLKKALLH 11 Unmodified _PEVLLKKALLH_ 0 0 0 IGSF10|p.R1021Gfs*41|1|0.13|ENSG00000152580|chr3:151446921-151446921|C/-|frameshift_variant IGSF10|p.R1021Gfs*41|1|0.13|ENSG00000152580|chr3:151446921-151446921|C/-|frameshift_variant IGSF10|p.R1021Gfs*41|1|0.13|ENSG00000152580|chr3:151446921-151446921|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.77783203125 2 630.905548 1259.79654 NaN NaN NaN NaN NaN NaN NaN 174.33 1 169.54 169.04 170.04 -4.7898 0 0 0 0.23379 1 35611 35611 5.2969 1.7004 1 33102 11937 22181 22196 32652 32652 0.17703674804738512 PEVLMQQGYD 10 Unmodified _PEVLMQQGYD_ 0 0 0 nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6 nc|ENSG00000072133|Q9UK32-2|RPS6KA6 nc|ENSG00000072133|Q9UK32-2|RPS6KA6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2739868164062 2 590.271164 1178.52777 NaN NaN NaN NaN NaN NaN NaN 170.7 1 165.79 165.29 166.29 -4.9149 0 0 0 0.22588 1 33763 33763 6.2058 0.47393 1 33103 1459 22182 22197 32653 32653 -0.054348322248642944 PEVPLKTGQL 10 Unmodified _PEVPLKTGQL_ 0 0 0 REV__ENST00000525083.5_1_11:126145223-126146937:+|nuORF REV__ENST00000525083.5_1_11:126145223-126146937:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2659301757812 2 541.316232 1080.61791 0.5185 0.00028067 -0.098764 -5.3462E-05 0.41974 0.00022721 541.3162352563305 159.32 0.61528 154.05 153.73 154.35 -5.2712 19 16 2 0 0 0 0.81109 1 30868 30868 13.042 0 1 1081900 + 33104 15190 22183 22198 32654 32654 0.08082585165857381 PEVRTGHRLS 10 Unmodified _PEVRTGHRLS_ 0 0 0 ENSG00000198690|ENST00000362065|FAN1;ENST00000565280.5_1_15:31198658-31229456:+|nuORF ENSG00000198690|ENST00000362065|FAN1 ENSG00000198690|ENST00000362065|FAN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3194580078125 2 576.317628 1150.6207 NaN NaN NaN NaN NaN NaN NaN 172.51 1 167.72 167.22 168.22 -4.7898 0 0 0 0.22588 1 35145 35145 8.7454 0.58988 1 33105 7473 22184 22199 32655 32655 0.051418533433889024 PEVTELDL 8 Unmodified _PEVTELDL_ 0 0 0 ENST00000503752.5_1_4:185571027-185578242:+|nuORF;ENST00000314970.10_1_4:185571027-185578242:+|nuORF;ENST00000515774.5_1_4:185571027-185580524:+|nuORF ENST00000503752.5_1_4:185571027-185578242:+|nuORF ENST00000503752.5_1_4:185571027-185578242:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2379455566406 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 49.505 1 46.624 46.124 47.124 -2.8811 0 0 0 0.21452 1 9379 9379 13.508 0 1 33106 8673 22185 22200 32656 32656 -0.0009733381323258072 PEVTHAALDE 10 Unmodified _PEVTHAALDE_ 0 0 0 MGARP|p.N181H|1|0.34|ENSG00000137463|chr4:139266781-139266781|T/G|missense_variant MGARP|p.N181H|1|0.34|ENSG00000137463|chr4:139266781-139266781|T/G|missense_variant MGARP|p.N181H|1|0.34|ENSG00000137463|chr4:139266781-139266781|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2622680664062 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 127.72 1 123.1 122.6 123.6 -4.6172 0 0 0 0.22588 1 25185 25185 8.1555 0.8663 1 33107 12141 22186 22201 32657 32657 -0.028280455242793323 PEVTPDMDYL 10 Unmodified _PEVTPDMDYL_ 0 0 0 nc|ENSG00000116690|Q92954-5|PRG4;nc|ENSG00000116690|Q92954-4|PRG4;nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-6|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;ENSG00000116690|ENST00000445192|PRG4 nc|ENSG00000116690|Q92954-5|PRG4 nc|ENSG00000116690|Q92954-5|PRG4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2476806640625 2 590.265547 1178.51654 NaN NaN NaN NaN NaN NaN NaN 171.56 1 166.65 166.15 167.15 -4.9149 0 0 0 0.22588 1 33987 33987 6.2058 1.8765 1 33108 2942 22187 22202 32658 32658 -0.06557654319021822 PEVYLQRSVL 10 Unmodified _PEVYLQRSVL_ 0 0 0 SERTAD4|p.R127Q|1|0.34|ENSG00000082497|chr1:210241646-210241646|G/A|missense_variant SERTAD4|p.R127Q|1|0.34|ENSG00000082497|chr1:210241646-210241646|G/A|missense_variant SERTAD4|p.R127Q|1|0.34|ENSG00000082497|chr1:210241646-210241646|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.301513671875 2 602.340238 1202.66592 1.2717 0.00076598 -2.9908 -0.0018015 -1.7191 -0.0010355 602.8409419160143 171.88 0.10397 167.09 167.01 167.12 -4.7898 4 2 2 0 0 0 0.6817 1 34972 34972 13.042 0.80181 1 5402000 33109 25654 22188 22203 32659 32659 0.07269659085909552 PEWCNGTSHKC 11 Unmodified _PEWCNGTSHKC_ 0 0 0 ADAM29|p.S701Kfs*2|2|0.35|ENSG00000168594|chr4:174977619-174977620|-/A|frameshift_variant;nc|ENSG00000168594|Q9UKF5-2|ADAM29;nc|ENSG00000168594|Q9UKF5-3|ADAM29;ENSG00000168594|ENST00000359240|ADAM29 ADAM29|p.S701Kfs*2|2|0.35|ENSG00000168594|chr4:174977619-174977620|-/A|frameshift_variant ADAM29|p.S701Kfs*2|2|0.35|ENSG00000168594|chr4:174977619-174977620|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.777099609375 2 631.258065 1260.50158 0.56067 0.00035393 -4.3932 -0.0027732 -3.8325 -0.0024193 631.7559865001617 146.79 0.10924 141.79 141.71 141.82 -5 4 2 2 0 0 0 0.96102 1 28407 28407 5.7319 2.9967 1 2067600 33110 55 22189 22204 32660 32660 -0.11825424667995321 PEWEPPEPG 9 Unmodified _PEWEPPEPG_ 0 0 0 REV__ENSG00000168159|ENST00000305943|RNF187 REV__ENSG00000168159|ENST00000305943|RNF187 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 346.18536376953125 3 346.490668 1036.45018 0.033133 1.148E-05 -0.40459 -0.00014019 -0.37146 -0.00012871 346.4905159817359 49.669 0.8248 46.67 46.278 47.103 -2.999 38 23 2 0 0 0 0.8825 1 9031 9031 1.0715 0 1 2891800 + 33111 18003 22190 22205 32661 32661 -0.06659102098774383 PEWLWTWWINF 11 Unmodified _PEWLWTWWINF_ 0 0 0 SLCO6A1|p.F525Vfs*12|1|0.2|ENSG00000205359|chr5:102413043-102413044|-/C|frameshift_variant;nc|ENSG00000205359|Q86UG4-2|SLCO6A1;ENSG00000205359|ENST00000506729|SLCO6A1 SLCO6A1|p.F525Vfs*12|1|0.2|ENSG00000205359|chr5:102413043-102413044|-/C|frameshift_variant SLCO6A1|p.F525Vfs*12|1|0.2|ENSG00000205359|chr5:102413043-102413044|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 526.2990112304688 3 526.590717 1576.75032 NaN NaN NaN NaN NaN NaN NaN 170.52 1 165.65 165.15 166.15 -4.873 0 0 0 0.22632 1 33748 33748 0.58532 0.41332 1 33112 7644 22191 22206 32662 32662 -0.014983900973447817 PEWWDGDDM 9 Unmodified _PEWWDGDDM_ 0 0 0 REV__ENST00000497548.5_1_17:19459198-19470111:+|nuORF REV__ENST00000497548.5_1_17:19459198-19470111:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3196411132812 2 575.710939 1149.40732 -0.073839 -4.251E-05 0.076166 4.385E-05 0.0023273 1.3399E-06 575.7108908454909 68.57 0.58665 65.39 65.141 65.728 -3.1796 21 16 2 0 0 0 0.68435 1 13319 13319 7.2892 1.0834 1 4664000 + 33113 22404 22192 22207 32663 32663 -0.1614024021851037 PEYGYLAREY 10 Unmodified _PEYGYLAREY_ 0 0 0 ENSG00000183862|ENST00000329903|CNGA2;CNGA2|p.K435Sfs*6|1|0.06|ENSG00000183862|chrX:151743806-151743806|A/-|frameshift_variant ENSG00000183862|ENST00000329903|CNGA2 ENSG00000183862|ENST00000329903|CNGA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7650146484375 2 630.798403 1259.58225 NaN NaN NaN NaN NaN NaN NaN 132.03 1 127.23 126.73 127.73 -4.799 0 0 0 0.22588 1 25417 25417 3.5965 0.60125 1 33114 6876 22193 22208 32664 32664 -0.037154970818164657 PEYKVPGLY 9 Unmodified _PEYKVPGLY_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8;SCAF8|p.P705Lfs*6|1|0.37|ENSG00000213079|chr6:154827210-154827210|C/-|frameshift_variant;SCAF8|p.L984*|1|0.58|ENSG00000213079|chr6:154832525-154832525|T/-|frameshift_variant;SCAF8|p.R1000Gfs*22|1|0.51|ENSG00000213079|chr6:154832572-154832572|A/-|frameshift_variant;SCAF4|p.N120Mfs*25|2|0.14|ENSG00000156304|chr21:31702342-31702342|T/-|frameshift_variant;ENST00000485790.1_1_21:33073145-33104086:-|nuORF;SCAF4|p.P250Hfs*96|6|0.29|ENSG00000156304|chr21:31701023-31701023|G/-|frameshift_variant;SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4;SCAF4|p.E653Qfs*24|1|0.4|ENSG00000156304|chr21:31688393-31688394|-/TG|frameshift_variant nc|ENSG00000213079|Q9UPN6-2|SCAF8;SCAF4|p.E653Qfs*24|1|0.4|ENSG00000156304|chr21:31688393-31688394|-/TG|frameshift_variant nc|ENSG00000213079|Q9UPN6-2|SCAF8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2630004882812 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 133.39 1 128.57 128.07 129.07 -4.8175 0 0 0 0.23508 1 25672 25672 7.9102 0.62092 1 33115 12588;25637 22194 22209 32665 32665 0.024552247287829232 PEYLKIKLKL 10 Unmodified _PEYLKIKLKL_ 0 0 0 ENST00000408939.3_1_2:178417606-178417663:-|nuORF ENST00000408939.3_1_2:178417606-178417663:-|nuORF ENST00000408939.3_1_2:178417606-178417663:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7722778320312 2 622.902474 1243.7904 NaN NaN NaN NaN NaN NaN NaN 127.05 1 127.05 126.55 127.55 0 0 0 0 0.22588 1 25078 25078 3.5965 0.60125 1 33116 9557 22195 22210 32666 32666 0.17825156573212553 PEYMDFRVF 9 Unmodified _PEYMDFRVF_ 0 0 0 ZSWIM2|p.K482Nfs*2|2|0.2|ENSG00000163012|chr2:186828440-186828440|T/-|frameshift_variant;ENSG00000163012|ENST00000295131|ZSWIM2 ZSWIM2|p.K482Nfs*2|2|0.2|ENSG00000163012|chr2:186828440-186828440|T/-|frameshift_variant ZSWIM2|p.K482Nfs*2|2|0.2|ENSG00000163012|chr2:186828440-186828440|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2977294921875 2 602.278792 1202.54303 NaN NaN NaN NaN NaN NaN NaN 139.73 1 134.88 134.38 135.38 -4.8492 0 0 0 0.23508 1 26943 26943 4.3292 0.38484 1 33117 5393 22196 22211 32667 32667 -0.050139206370431566 PFAAGAPP 8 Unmodified _PFAAGAPP_ 0 0 0 REV__ENSG00000283526|ENST00000636672|PRRT1B REV__ENSG00000283526|ENST00000636672|PRRT1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 364.19097900390625 2 364.192314 726.370075 NaN NaN NaN NaN NaN NaN NaN 20.313 1 18.928 18.428 19.428 -1.3847 0 0 0 0.23711 1 3147 3147 0.12286 0.11948 1 + 33118 19959 22197 22212 32668 32668 -0.004054989113001284 PFCPPQQV 8 Unmodified _PFCPPQQV_ 0 0 0 REV__ENSG00000005381|ENST00000225275|MPO REV__ENSG00000005381|ENST00000225275|MPO MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22576904296875 2 458.223288 914.432024 NaN NaN NaN NaN NaN NaN NaN 49.959 1 47.077 46.577 47.577 -2.8811 0 0 0 0.23025 1 9470 9470 6.1918 6.1186 1 + 33119 13857 22198 22213 32669 32669 -0.02861515554457128 PFCSSYSPR 9 Unmodified _PFCSSYSPR_ 0 0 0 REV__KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant REV__KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2605590820312 2 522.234384 1042.45422 NaN NaN NaN NaN NaN NaN NaN 144.89 1 144.89 144.39 145.39 0 0 0 0 0.23508 1 28956 28956 6.2058 0.97511 1 + 33120 19499 22199 22214 32670 32670 -0.0653133587670709 PFDDFDCD 8 Unmodified _PFDDFDCD_ 0 0 0 nc|ENSG00000167524|Q96LW2|RSKR;ENSG00000167524|ENST00000301037|RSKR nc|ENSG00000167524|Q96LW2|RSKR nc|ENSG00000167524|Q96LW2|RSKR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.1628723144531 3 325.112981 972.317113 NaN NaN NaN NaN NaN NaN NaN 29.652 1 29.652 29.152 30.152 0 0 0 0 0.21486 1 5306 5306 0 0 1 33121 5814 22200 22215 32671 32671 -0.17015289546930035 PFDKYAPKL 9 Unmodified _PFDKYAPKL_ 0 0 0 nc|ENSG00000112787|Q9HCM7|FBRSL1 nc|ENSG00000112787|Q9HCM7|FBRSL1 nc|ENSG00000112787|Q9HCM7|FBRSL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20166015625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 96.363 1 92.128 91.628 92.628 -4.2348 0 0 0 0.23508 1 18399 18399 5.2969 0 1 33122 12288 22201 22216 32672 32672 0.05019217482708882 PFDRELDEWWR 11 Unmodified _PFDRELDEWWR_ 0 0 0 REV__ENSG00000204599|ENST00000396551|TRIM39 REV__ENSG00000204599|ENST00000396551|TRIM39 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 516.8046264648438 3 516.912519 1547.71573 NaN NaN NaN NaN NaN NaN NaN 158.98 1 153.7 153.2 154.2 -5.2712 0 0 0 0.22632 1 30846 30846 0.00056442 0 1 + 33123 19551 22202 22217 32673 32673 -0.036222579761215457 PFDSTMIEYT 10 Unmodified _PFDSTMIEYT_ 0 0 0 REV__nc|ENSG00000276234|O75478-2|TADA2A REV__nc|ENSG00000276234|O75478-2|TADA2A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.27392578125 2 602.265547 1202.51654 NaN NaN NaN NaN NaN NaN NaN 116.36 1 111.78 111.28 112.28 -4.5815 0 0 0 0.22544 1 22327 22327 19.257 2.1441 1 + 33124 19939 22203 22218 32674 32674 -0.07661654319031186 PFEGIVHY 8 Unmodified _PFEGIVHY_ 0 0 0 REV__tr|U7T8K2|U7T8K2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00080PE=4SV=1 REV__tr|U7T8K2|U7T8K2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00080PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2419128417969 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 97.313 1 93.394 92.894 93.894 -3.9194 0 0 0 0.22934 1 18675 18675 0.62683 0.50396 1 + 33125 25471 22204 22219 32675 32675 -0.011298866482889025 PFFKQICLR 9 Unmodified _PFFKQICLR_ 0 0 0 REV__GBP5|p.K244Sfs*13|1|0.31|ENSG00000154451|chr1:89266483-89266483|T/-|frameshift_variant REV__GBP5|p.K244Sfs*13|1|0.31|ENSG00000154451|chr1:89266483-89266483|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3218994140625 2 576.323337 1150.63212 NaN NaN NaN NaN NaN NaN NaN 153.97 1 149.2 148.7 149.7 -4.7684 0 0 0 0.23508 1 30597 30597 10.824 1.28 1 + 33126 17181 22205 22220 32676 32676 0.06282959113150355 PFFRNNRK 8 Unmodified _PFFRNNRK_ 0 0 0 REV__ENST00000533836.1_1_1:52530596-52536891:+|nuORF REV__ENST00000533836.1_1_1:52530596-52536891:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2167053222656 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 130.28 1 125.51 125.01 126.01 -4.7725 0 0 0 0.21486 1 25071 25071 1.6526 0 1 + 33127 22800 22206 22221 32677 32677 0.047508068684237514 PFFSLQQI 8 Unmodified _PFFSLQQI_ 0 0 0 nc|ENSG00000198026|Q9H4Z2-2|ZNF335;ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant;ENSG00000198026|ENST00000322927|ZNF335 nc|ENSG00000198026|Q9H4Z2-2|ZNF335 nc|ENSG00000198026|Q9H4Z2-2|ZNF335 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2643127441406 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 133.69 1 133.69 133.19 134.19 0 0 0 0 0.22684 1 26451 26451 1.7423 1.1154 1 33128 7424 22207 22222 32678 32678 0.027349729028628644 PFGIQIQRK 9 Unmodified _PFGIQIQRK_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7872924804688 2 543.824558 1085.63456 NaN NaN NaN NaN NaN NaN NaN 144.93 1 144.93 144.43 145.43 0 0 0 0 0.19674 1 28963 28963 1.2148 1.0075 1 33129 7947 22208 22223 32679 32679 0.09517130842482402 PFGWFRRL 8 Unmodified _PFGWFRRL_ 0 0 0 ENST00000567216.5_1_16:587439-587742:+|nuORF ENST00000567216.5_1_16:587439-587742:+|nuORF ENST00000567216.5_1_16:587439-587742:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 3 360.203016 1077.58722 NaN NaN NaN NaN NaN NaN NaN 92.062 1 92.062 91.562 92.562 0 0 0 0 0.21486 1 17997 17997 7.9102 3.5809 1 33130 11380 22209 22224 32680 32680 0.051528963621194634 PFHCSQCQ 8 Unmodified _PFHCSQCQ_ 0 0 0 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1862487792969 3 317.126679 948.358207 NaN NaN NaN NaN NaN NaN NaN 83.879 1 79.97 79.47 80.47 -3.9093 0 0 0 0.21486 1 15939 15939 0.45834 0 1 33131 5823 22210 22225 32681 32681 -0.11803806988439192 PFHLKVGH 8 Unmodified _PFHLKVGH_ 0 0 0 ENSG00000145723|ENST00000399004|GIN1 ENSG00000145723|ENST00000399004|GIN1 ENSG00000145723|ENST00000399004|GIN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.15155029296875 3 312.1801 933.518471 NaN NaN NaN NaN NaN NaN NaN 73.892 1 70.298 69.798 70.798 -3.594 0 0 0 0.21486 1 14028 14028 0.45834 0 1 33132 4615 22211 22226 32682 32682 0.049052320624241474 PFHLRVIDP 9 Unmodified _PFHLRVIDP_ 0 0 0 REV__nc|ENSG00000069667|P35398-4|RORA REV__nc|ENSG00000069667|P35398-4|RORA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7877197265625 2 547.311284 1092.60801 0.4392 0.00024038 1.9726 0.0010796 2.4118 0.00132 547.312519576073 84.065 0.45374 84.065 83.962 84.416 0 14 12 2 0 0 0 0.31728 1 16410 16410 0.87518 0.46691 1 861490 + 33133 14243 22212 22227 32683 32683 0.06541441951139859 PFHLRVIDP 9 Unmodified _PFHLRVIDP_ 0 0 0 REV__nc|ENSG00000069667|P35398-4|RORA REV__nc|ENSG00000069667|P35398-4|RORA MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.311284 1092.60801 0.3591 0.00019654 2.1326 0.0011672 2.4917 0.0013637 547.8139801434764 87.742 0.39296 83.747 83.582 83.975 -3.9953 -0.15877 0.00010465 NaN 0.87518 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1234300 + 33134 14243 22212 22227 0.06541441951139859 PFHPRSLC 8 Unmodified _PFHPRSLC_ 0 0 0 REV__ENST00000317114.1_1_18:3594184-3596682:+|nuORF REV__ENST00000317114.1_1_18:3594184-3596682:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7428894042969 2 478.742179 955.469806 NaN NaN NaN NaN NaN NaN NaN 135.29 1 130.46 129.96 130.96 -4.8307 0 0 0 0.21323 1 26045 26045 14.582 2.0501 1 + 33135 20527 22213 22228 32684 32684 -0.009710045689985236 PFHYKNGT 8 Unmodified _PFHYKNGT_ 0 0 0 ENSG00000188334|ENST00000344839|BSPH1 ENSG00000188334|ENST00000344839|BSPH1 ENSG00000188334|ENST00000344839|BSPH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7744445800781 2 482.237784 962.461016 NaN NaN NaN NaN NaN NaN NaN 114.24 1 109.77 109.27 110.27 -4.4726 0 0 0 0.21486 1 22512 22512 9.3474 0 1 33136 7163 22214 22229 32685 32685 -0.021716549338179902 PFIDREWWHR 10 Unmodified _PFIDREWWHR_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24407958984375 3 481.242311 1440.7051 NaN NaN NaN NaN NaN NaN NaN 59.338 1 56.115 55.615 56.615 -3.2237 0 0 0 2.8426 1 11082 11082 1.9064 0.45126 1 33137 1453 22215 22230 32686 32686 0.0023780416011049965 PFIIHNGAIY 10 Unmodified _PFIIHNGAIY_ 0 0 0 PZP|p.F645I|1|0.92|ENSG00000126838|chr12:9169498-9169498|A/T|missense_variant PZP|p.F645I|1|0.92|ENSG00000126838|chr12:9169498-9169498|A/T|missense_variant PZP|p.F645I|1|0.92|ENSG00000126838|chr12:9169498-9169498|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 383.2060241699219 3 382.209836 1143.60768 -0.44691 -0.00017082 -2.3254 -0.0008888 -2.7723 -0.0010596 382.20877448222916 64.611 0.93796 64.611 64.271 65.209 0 57 26 3 0 0 0 0.47611 1 12429 12429 0.26539 0 1 5015200 33138 12851 22216 22231 32687 32687 0.04162022231298579 PFIIHNGAIY 10 Unmodified _PFIIHNGAIY_ 0 0 0 PZP|p.F645I|1|0.92|ENSG00000126838|chr12:9169498-9169498|A/T|missense_variant PZP|p.F645I|1|0.92|ENSG00000126838|chr12:9169498-9169498|A/T|missense_variant PZP|p.F645I|1|0.92|ENSG00000126838|chr12:9169498-9169498|A/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 382.209836 1143.60768 -0.26646 -0.00010184 -3.3313 -0.0012733 -3.5978 -0.0013751 382.2085011394394 67.656 0.65179 64.547 64.213 64.865 -3.1086 -0.024795 2.1261E-05 NaN 0.26539 49 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6034800 33139 12851 22216 22231 0.04162022231298579 PFIIHNGAIY 10 Unmodified _PFIIHNGAIY_ 0 0 0 PZP|p.F645I|1|0.92|ENSG00000126838|chr12:9169498-9169498|A/T|missense_variant PZP|p.F645I|1|0.92|ENSG00000126838|chr12:9169498-9169498|A/T|missense_variant PZP|p.F645I|1|0.92|ENSG00000126838|chr12:9169498-9169498|A/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 382.209836 1143.60768 0.31646 0.00012095 -3.7554 -0.0014354 -3.439 -0.0013144 382.2083888953116 68.093 0.59262 64.557 64.271 64.864 -3.5362 -0.014944 -0.00046505 NaN 0.26539 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4522100 33140 12851 22216 22231 0.04162022231298579 PFKFSDHYY 9 Unmodified _PFKFSDHYY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2798461914062 2 602.277106 1202.53966 0.45553 0.00027436 0.76158 0.00045868 1.2171 0.00073304 602.7769824840609 145.57 0.2038 140.46 140.38 140.58 -5.1108 7 5 2 0 0 0 0.44856 1 28116 28116 1.2148 0 1 2130300 33141 2659 22217 22232 32688 32688 -0.0535084741936771 PFKHLILII 9 Unmodified _PFKHLILII_ 0 0 0 REV__ENSG00000059588|ENST00000040877|TARBP1 REV__ENSG00000059588|ENST00000040877|TARBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7861328125 2 547.360245 1092.70594 0.32667 0.00017881 1.1732 0.00064218 1.4999 0.00082099 547.3623188536916 125.59 0.14062 125.59 125.47 125.61 0 5 3 2 0 0 0 0.65257 1 24771 24771 0.0033805 0.0033805 1 779710 + 33142 14136 22218 22233 32689 32689 0.16329250547141783 PFKVDKLVK 9 Unmodified _PFKVDKLVK_ 0 0 0 REV__nc|ENSG00000101557|P54578-2|USP14 REV__nc|ENSG00000101557|P54578-2|USP14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 537.7340087890625 2 537.33951 1072.66447 0.36804 0.00019776 3.7135 0.0019954 4.0815 0.0021932 537.8444600810166 144.22 0.17542 139.27 139.17 139.34 -4.9445 5 4 2 0 0 0 0.59847 1 27843 27843 0.40827 0.335 1 1148300 + 33143 14794 22219 22234 32690 32690 0.13104069787800654 PFLLLCYVL 9 Unmodified _PFLLLCYVL_ 0 0 0 REV__ENSG00000165959|ENST00000298912|CLMN REV__ENSG00000165959|ENST00000298912|CLMN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1407470703125 3 360.876918 1079.60893 -0.2823 -0.00010187 0.34204 0.00012344 0.059745 2.1561E-05 360.8769532707777 76.925 0.2368 73.51 73.389 73.626 -3.4151 11 6 2 0 0 0 0.88237 1 14992 14992 0 0 1 848700 + 33144 17812 22220 22235 32691 32691 0.07230520275811614 PFLPSFLRF 9 Unmodified _PFLPSFLRF_ 0 0 0 nc|ENSG00000118971|P30279-2|CCND2 nc|ENSG00000118971|P30279-2|CCND2 nc|ENSG00000118971|P30279-2|CCND2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2146911621094 3 375.21481 1122.6226 NaN NaN NaN NaN NaN NaN NaN 159.65 1 154.4 153.9 154.9 -5.2451 0 0 0 0.19636 1 30988 30988 2.4985 2.4252 1 33145 12296 22221 22236 32692 32692 0.06619514099270418 PFLQLAQDY 9 Unmodified _PFLQLAQDY_ 0 0 0 nc|ENSG00000180354|Q8N3F0-3|MTURN;MTURN|p.R94Qfs*11|1|0.34|ENSG00000180354|chr7:30146289-30146290|-/T|frameshift_variant;nc|ENSG00000180354|Q8N3F0-2|MTURN;ENSG00000180354|ENST00000324453|MTURN nc|ENSG00000180354|Q8N3F0-3|MTURN nc|ENSG00000180354|Q8N3F0-3|MTURN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7936401367188 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 147.31 1 142.31 141.81 142.81 -5 0 0 0 0.23411 1 28515 28515 13.508 1.8676 1 33146 6672 22222 22237 32693 32693 0.0013803672336507589 PFLQRTSL 8 Unmodified _PFLQRTSL_ 0 0 0 ENST00000313349.3_1_2:64860645-64860798:-|nuORF ENST00000313349.3_1_2:64860645-64860798:-|nuORF ENST00000313349.3_1_2:64860645-64860798:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2331848144531 2 481.276909 960.539266 0.093983 4.5232E-05 0.02894 1.3928E-05 0.12292 5.916E-05 481.27692959380755 60.579 1.8293 57.355 56.533 58.362 -3.2237 85 51 2 0 0 0 0.70613 1 11210 11210 13.508 0 1 1364400 33147 8663 22223 22238 32694 32694 0.05741777651417124 PFLTTREFI 9 Unmodified _PFLTTREFI_ 0 0 0 ENST00000423484.2_1_7:63809187-63809394:+|nuORF ENST00000423484.2_1_7:63809187-63809394:+|nuORF ENST00000423484.2_1_7:63809187-63809394:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2082824707031 3 375.209725 1122.60735 -1.6769 -0.00062918 -1.0706 -0.00040168 -2.7474 -0.0010309 375.2092810275563 19.605 0.45236 17.97 17.775 18.227 -1.6351 29 12 4 0 0 0 0.5428 1 2954 2954 4.897 4.3117 1 3214700 33148 9690 22224 22239 32695 32695 0.05094602511417179 PFLVAIQYQ 9 Unmodified _PFLVAIQYQ_ 0 0 0 ABCA3|p.S746Pfs*15|1|0.32|ENSG00000167972|chr16:2297357-2297357|C/-|frameshift_variant;ENST00000563623.5_1_16:2339371-2378589:-|nuORF;ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant;ENSG00000167972|ENST00000301732|ABCA3 ABCA3|p.S746Pfs*15|1|0.32|ENSG00000167972|chr16:2297357-2297357|C/-|frameshift_variant ABCA3|p.S746Pfs*15|1|0.32|ENSG00000167972|chr16:2297357-2297357|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017517089844 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 96.39 1 92.341 91.841 92.841 -4.0496 0 0 0 0.23508 1 18902 18902 4.897 1.3005 1 33149 11 22225 22240 32696 32696 0.050192174826861446 PFLWDTLGP 9 Unmodified _PFLWDTLGP_ 0 0 0 REV__nc|ENSG00000249139|O95925-3|EPPIN REV__nc|ENSG00000249139|O95925-3|EPPIN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6898803710938 2 523.271293 1044.52803 0.35176 0.00018407 -1.409 -0.00073728 -1.0572 -0.00055321 523.2703143849293 35.842 0.4538 33.565 33.316 33.77 -2.2766 22 12 3 0 0 0 0.70873 1 6297 6297 24.674 0 1 1155600 + 33150 14789 22226 22241 32697 32697 0.007549555572950339 PFLWLKWP 8 Unmodified _PFLWLKWP_ 0 0 0 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7788696289062 2 543.810388 1085.60622 0.04537 2.4673E-05 1.6102 0.00087566 1.6556 0.00090034 543.81181498832 96.475 0.14041 92.556 92.472 92.612 -3.9194 5 3 2 0 0 0 0.88646 1 18510 18510 0.62683 0 1 310390 33151 7818 22227 22242 32698 32698 0.06684432933161588 PFMLSQSTQI 10 Unmodified _PFMLSQSTQI_ 0 0 0 REV__ENST00000494148.1_1_7:142651443-142655450:-|nuORF REV__ENST00000494148.1_1_7:142651443-142655450:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33447265625 2 576.291899 1150.56925 0.42247 0.00024346 0.95551 0.00055065 1.378 0.00079412 576.2920274912914 101.38 0.75726 97.083 96.702 97.46 -4.297 49 21 3 0 0 0 0.61964 1 19463 19463 18.146 4.2403 1 4809800 + 33152 22361 22228 22243 32699 32699 -1.6514655499122455E-05 PFMLSQSTQI 10 Unmodified _PFMLSQSTQI_ 0 0 0 REV__ENST00000494148.1_1_7:142651443-142655450:-|nuORF REV__ENST00000494148.1_1_7:142651443-142655450:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3209228515625 2 576.291899 1150.56925 0.3917 0.00022574 1.0024 0.0005777 1.3941 0.00080343 576.2922104053259 100.96 0.87663 96.975 96.753 97.629 -3.9895 52 24 3 0 0 0 0.664 1 19513 19513 14.838 4.0143 1 3179400 + 33153 22361 22228 22243 32700 32700 -1.6514655499122455E-05 PFMVAKPDSS 10 Unmodified _PFMVAKPDSS_ 0 0 0 REV__MMP12|p.Y390Ifs*7|1|0.4|ENSG00000262406|chr11:102865813-102865813|A/-|frameshift_variant REV__MMP12|p.Y390Ifs*7|1|0.4|ENSG00000262406|chr11:102865813-102865813|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20050048828125 3 360.179437 1077.51648 NaN NaN NaN NaN NaN NaN NaN 156.28 1 151.5 151 152 -4.7885 0 0 0 0.22588 1 31077 31077 1.9064 0.45126 1 + 33154 19892 22229 22244 32701 32701 -0.019176095283455652 PFPALAPPI 9 Unmodified _PFPALAPPI_ 0 0 0 REV__ENST00000572681.6_2_19:42799698-42799941:+|nuORF REV__ENST00000572681.6_2_19:42799698-42799941:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5393981933594 2 461.773471 921.53239 NaN NaN NaN NaN NaN NaN NaN 114.97 1 110.66 110.16 111.16 -4.3136 0 0 0 0.19697 1 22135 22135 0.87518 0 1 + 33155 23178 22230 22245 32702 32702 0.06848464770826013 PFPARALKKPL 11 Unmodified _PFPARALKKPL_ 0 0 0 REV__ENST00000561743.5_2_16:58033574-58036432:+|nuORF REV__ENST00000561743.5_2_16:58033574-58036432:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 413.2664794921875 3 413.264164 1236.77066 NaN NaN NaN NaN NaN NaN NaN 161.63 1 156.44 155.94 156.94 -5.1878 0 0 0 0.23698 1 31369 31369 0.50596 0.09769 1 + 33156 23058 22231 22246 32703 32703 0.1617482535311865 PFPCRPEIAAP 11 Unmodified _PFPCRPEIAAP_ 0 0 0 REV__NAA30|p.V23I|1|0.29|ENSG00000139977|chr14:57391024-57391024|G/A|missense_variant REV__NAA30|p.V23I|1|0.29|ENSG00000139977|chr14:57391024-57391024|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 399.84619140625 3 399.874348 1196.60121 NaN NaN NaN NaN NaN NaN NaN 7.9597 1 6.9449 6.4449 7.4449 -1.0148 0 0 0 0.22632 1 706 706 0.026206 0.026206 1 + 33157 23911 22232 22247 32704 32704 0.010777610082641331 PFPRVQSPP 9 Unmodified _PFPRVQSPP_ 0 0 0 nc|ENSG00000095397|Q9P202-3|WHRN;nc|ENSG00000095397|Q9P202-4|WHRN;ENSG00000095397|ENST00000362057|WHRN nc|ENSG00000095397|Q9P202-3|WHRN nc|ENSG00000095397|Q9P202-3|WHRN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.1817932128906 3 342.190665 1023.55016 NaN NaN NaN NaN NaN NaN NaN 118.53 1 113.92 113.42 114.42 -4.6106 0 0 0 0.23508 1 22743 22743 1.1933 0.12188 1 33158 1859 22233 22248 32705 32705 0.03933180025705951 PFQVEIKPE 9 Unmodified _PFQVEIKPE_ 0 0 0 REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF;REV__ENSG00000113805|ENST00000263665|CNTN3 REV__ENSG00000113805|ENST00000263665|CNTN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77978515625 2 543.795132 1085.57571 0.21026 0.00011434 -1.0381 -0.00056453 -0.82787 -0.00045019 543.7925627329327 161.98 0.10329 156.84 156.78 156.89 -5.1438 4 2 2 0 0 0 0.85111 1 31450 31450 3.5965 2.1146 1 1007100 + 33159 15352;13466 22234 22249 32706 32706 0.03634609757477847 PFRRFTCII 9 Unmodified _PFRRFTCII_ 0 0 0 nc|ENSG00000077935|Q8NDV3-2|SMC1B;ENSG00000077935|ENST00000357450|SMC1B;SMC1B|p.K324Nfs*10|2|0.29|ENSG00000077935|chr22:45399236-45399236|T/-|frameshift_variant;SMC1B|p.K352Sfs*31|1|0.37|ENSG00000077935|chr22:45399153-45399153|T/-|frameshift_variant nc|ENSG00000077935|Q8NDV3-2|SMC1B nc|ENSG00000077935|Q8NDV3-2|SMC1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3355712890625 2 576.820961 1151.62737 0.46198 0.00026648 1.9792 0.0011416 2.4411 0.0014081 577.3240244087093 161.35 0.24718 156.09 155.91 156.16 -5.2526 9 6 2 0 0 0 0.85913 1 31317 31317 3.2813 0 1 849020 33160 1564 22235 22250 32707 32707 0.05762074970402864 PFSECCMDI 9 Unmodified _PFSECCMDI_ 0 0 0 IRS4|p.S1059Y|1|0.77|ENSG00000133124|chrX:108733169-108733169|G/T|missense_variant;IRS4|p.S1063Afs*9|1|0.36|ENSG00000133124|chrX:108733159-108733159|G/-|frameshift_variant;ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4 IRS4|p.S1059Y|1|0.77|ENSG00000133124|chrX:108733169-108733169|G/T|missense_variant IRS4|p.S1059Y|1|0.77|ENSG00000133124|chrX:108733169-108733169|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6968994140625 2 522.695389 1043.37622 0.23202 0.00012127 2.2314 0.0011663 2.4634 0.0012876 522.6963331661593 110.62 0.59702 110.62 110.33 110.93 0 38 16 4 0 0 0 0.74257 1 21742 21742 4.3292 1.334 1 4285000 33161 3786 22236 22251 32708 32708 -0.14372852848600814 PFSESHRAR 9 Unmodified _PFSESHRAR_ 0 0 0 ENST00000508487.2_1_4:74964623-74965000:-|nuORF ENST00000508487.2_1_4:74964623-74965000:-|nuORF ENST00000508487.2_1_4:74964623-74965000:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7741088867188 2 543.775597 1085.53664 NaN NaN NaN NaN NaN NaN NaN 96.148 1 91.913 91.413 92.413 -4.2348 0 0 0 0.22621 1 18357 18357 15.847 1.0089 1 33162 10714 22237 22252 32709 32709 -0.002706777535195215 PFSLEQQL 8 Unmodified _PFSLEQQL_ 0 0 0 nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2 nc|ENSG00000135250|P78362|SRPK2 nc|ENSG00000135250|P78362|SRPK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2543029785156 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 130.95 1 126.31 125.81 126.81 -4.6359 0 0 0 0.20568 1 25805 25805 20.871 1.4322 1 33163 3910 22238 22253 32710 32710 0.00982078660570096 PFVEEYIPT 9 Unmodified _PFVEEYIPT_ 0 0 0 nc|ENSG00000196642|Q3YEC7-4|RABL6;nc|ENSG00000196642|Q3YEC7-5|RABL6;nc|ENSG00000196642|Q3YEC7-6|RABL6;nc|ENSG00000196642|Q3YEC7-3|RABL6;RABL6|p.K613Sfs*9|1|0.17|ENSG00000196642|chr9:136839766-136839766|C/-|frameshift_variant;ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6 nc|ENSG00000196642|Q3YEC7-4|RABL6 nc|ENSG00000196642|Q3YEC7-4|RABL6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7742309570312 2 547.773865 1093.53318 0.013198 7.2296E-06 0.64658 0.00035418 0.65978 0.00036141 547.774292111321 41.752 3.3031 39.117 37.156 40.459 -2.6348 277 93 5 0 0 0 0.6329 1 7555 7555 10.824 0.75 1 44108000 33164 7295 22239 22254 32711 32711 -0.00984785370769714 PFVERVTA 8 Unmodified _PFVERVTA_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2388916015625 2 459.75581 917.497067 0.27111 0.00012464 -0.53678 -0.00024679 -0.26567 -0.00012214 459.75576128403134 71.549 0.42647 67.922 67.699 68.126 -3.6275 16 11 2 0 0 0 0.72565 1 13495 13495 34.102 8.7031 1 974900 33165 1641 22240 22255 32712 32712 0.035018022430335805 PFVERVTA 8 Unmodified _PFVERVTA_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 459.75581 917.497067 -0.1018 -4.6802E-05 -0.65758 -0.00030233 -0.75938 -0.00034913 459.75603223547375 68.016 0.45669 68.016 67.687 68.144 0 0.047461 -7.1656E-05 NaN 34.102 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1299900 33166 1641 22240 22255 0.035018022430335805 PFVLLYCLIA 10 Unmodified _PFVLLYCLIA_ 0 0 0 REV__ENSG00000121270|ENST00000356608|ABCC11 REV__ENSG00000121270|ENST00000356608|ABCC11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3336181640625 2 576.330296 1150.64604 NaN NaN NaN NaN NaN NaN NaN 145.28 1 140.61 140.11 141.11 -4.6694 0 0 0 0.22588 1 28792 28792 7.9102 0.62092 1 + 33167 15648 22241 22256 32713 32713 0.07674191821593013 PFWLERDHWVV 11 Unmodified _PFWLERDHWVV_ 0 0 0 REV__ENST00000307851.8_1_5:156536189-156536273:-|nuORF REV__ENST00000307851.8_1_5:156536189-156536273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3781127929688 2 742.377686 1482.74082 NaN NaN NaN NaN NaN NaN NaN 115.58 1 115.58 115.08 116.08 0 0 0 0 0.22632 1 22749 22749 0.0059557 0 1 + 33168 20457 22242 22257 32714 32714 0.018758416171067438 PFWPVMFY 8 Unmodified _PFWPVMFY_ 0 0 0 ENST00000397137.5_2_20:36147118-36147202:-|nuORF ENST00000397137.5_2_20:36147118-36147202:-|nuORF ENST00000397137.5_2_20:36147118-36147202:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78515625 2 543.759507 1085.50446 0.26773 0.00014558 3.4328 0.0018666 3.7005 0.0020122 543.7598482502824 141.19 0.47971 136.54 136.37 136.85 -4.6493 13 13 2 0 0 0 0.72231 1 27864 27864 11.114 2.3691 1 1979700 33169 9459 22243 22258 32715 32715 -0.034871814808866475 PFWQLEAA 8 Unmodified _PFWQLEAA_ 0 0 0 PRDM14|p.R54W|1|0.22|ENSG00000147596|chr8:70069701-70069701|G/A|missense_variant PRDM14|p.R54W|1|0.22|ENSG00000147596|chr8:70069701-70069701|G/A|missense_variant PRDM14|p.R54W|1|0.22|ENSG00000147596|chr8:70069701-70069701|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24200439453125 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 97.87 1 93.621 93.121 94.121 -4.2487 0 0 0 0.21486 1 18700 18700 8.5933 0.68312 1 33170 12825 22244 22259 32716 32716 -0.011298866482889025 PGAAAAHL 8 Unmodified _PGAAAAHL_ 0 0 0 nc|ENSG00000146049|Q9UBP8|KAAG1 nc|ENSG00000146049|Q9UBP8|KAAG1 nc|ENSG00000146049|Q9UBP8|KAAG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 709.3685302734375 1 707.3835 706.376223 0.47 0.00033247 0.7903 0.00055904 1.2603 0.00089151 707.3839979185282 27.774 0.88077 26.018 25.65 26.531 -1.7552 54 24 3 0 0 0 0.7545 1 4682 4682 6.3541 3.4649 1 8186400 33171 12369 22245 22260 32717 32717 0.011290193202285081 PGAAAAHL 8 Unmodified _PGAAAAHL_ 0 0 0 nc|ENSG00000146049|Q9UBP8|KAAG1 nc|ENSG00000146049|Q9UBP8|KAAG1 nc|ENSG00000146049|Q9UBP8|KAAG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 707.3835 706.376223 0.49969 0.00035347 0.59827 0.0004232 1.098 0.00077668 707.3838364063619 26.042 0.92856 26.042 25.74 26.668 0 0.032742 -0.00012383 NaN 6.3541 60 26 3 NaN NaN NaN NaN 0 NaN NaN 0 8562500 33172 12369 22245 22260 0.011290193202285081 PGAAAAHL 8 Unmodified _PGAAAAHL_ 0 0 0 nc|ENSG00000146049|Q9UBP8|KAAG1 nc|ENSG00000146049|Q9UBP8|KAAG1 nc|ENSG00000146049|Q9UBP8|KAAG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 707.3835 706.376223 0.4693 0.00033198 0.88929 0.00062907 1.3586 0.00096104 707.3840622519441 27.963 0.90926 25.967 25.609 26.519 -1.9962 -0.042084 8.2028E-05 NaN 6.3541 58 25 3 NaN NaN NaN NaN 0 NaN NaN 0 5768100 33173 12369 22245 22260 0.011290193202285081 PGAAGASRY 9 Unmodified _PGAAGASRY_ 0 0 0 REV__LILRB5|p.P497S|1|0.38|ENSG00000105609|chr19:54252535-54252535|G/A|missense_variant REV__LILRB5|p.P497S|1|0.38|ENSG00000105609|chr19:54252535-54252535|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24383544921875 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 37.164 1 34.816 34.316 35.316 -2.3479 0 0 0 0.22621 1 6584 6584 15.847 4.2069 1 + 33174 23797 22246 22261 32718 32718 -0.01620514484955038 PGAAGASRY 9 Unmodified _PGAAGASRY_ 0 0 0 REV__LILRB5|p.P497S|1|0.38|ENSG00000105609|chr19:54252535-54252535|G/A|missense_variant REV__LILRB5|p.P497S|1|0.38|ENSG00000105609|chr19:54252535-54252535|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2385559082031 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 46.698 1 43.832 43.332 44.332 -2.8666 0 0 0 0.23508 1 8506 8506 7.2892 1.5288 1 + 33175 23797 22246 22261 32719 32719 -0.01620514484955038 PGAAGASRY 9 Unmodified _PGAAGASRY_ 0 0 0 REV__LILRB5|p.P497S|1|0.38|ENSG00000105609|chr19:54252535-54252535|G/A|missense_variant REV__LILRB5|p.P497S|1|0.38|ENSG00000105609|chr19:54252535-54252535|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.237060546875 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 114.74 1 110.43 109.93 110.93 -4.3136 0 0 0 0.23508 1 22091 22091 7.9102 0 1 + 33176 23797 22246 22261 32720 32720 -0.01620514484955038 PGAAKGFTKS 10 Unmodified _PGAAKGFTKS_ 0 0 0 REV__RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant REV__RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7818908691406 2 482.266542 962.51853 -0.030332 -1.4628E-05 -1.4428 -0.00069583 -1.4732 -0.00071046 482.2657666880699 89.686 0.46437 85.826 85.473 85.938 -3.8595 15 12 2 0 0 0 0.86261 1 17557 17557 10.824 0 1 1150800 + 33177 16113 22247 22262 32721 32721 0.03577187271741877 PGAAPEREGTP 11 Unmodified _PGAAPEREGTP_ 0 0 0 REV__nc|ENSG00000171533|Q96JE9-2|MAP6 REV__nc|ENSG00000171533|Q96JE9-2|MAP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.266845703125 2 541.26727 1080.51999 -0.1809 -9.7918E-05 -0.26177 -0.00014169 -0.44267 -0.00023961 541.7688157414201 20.449 0.63242 19.064 18.811 19.444 -1.3847 25 17 2 0 0 0 0.75285 1 3199 3199 8.1555 1.9497 1 1557900 + 33178 18233 22248 22263 32722 32722 -0.017052234301445424 PGAEVNEYNDH 11 Unmodified _PGAEVNEYNDH_ 0 0 0 REV__ENSG00000175857|ENST00000502276|GAPT REV__ENSG00000175857|ENST00000502276|GAPT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7640991210938 2 622.762549 1243.51054 NaN NaN NaN NaN NaN NaN NaN 66.308 1 66.308 65.808 66.808 0 0 0 0 0.23264 1 12802 12802 6.2058 2.6093 1 + 33179 18488 22249 22264 32723 32723 -0.10147036506327822 PGAEVNEYNDH 11 Unmodified _PGAEVNEYNDH_ 0 0 0 REV__ENSG00000175857|ENST00000502276|GAPT REV__ENSG00000175857|ENST00000502276|GAPT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7638549804688 2 622.762549 1243.51054 NaN NaN NaN NaN NaN NaN NaN 69.345 1 66.166 65.666 66.666 -3.1796 0 0 0 0.23264 1 13482 13482 6.2058 0.9089 1 + 33180 18488 22249 22264 32724 32724 -0.10147036506327822 PGAFLGAPGS 10 Unmodified _PGAFLGAPGS_ 0 0 0 ENST00000450390.6_1_1:1189931-1190276:-|nuORF ENST00000450390.6_1_1:1189931-1190276:-|nuORF ENST00000450390.6_1_1:1189931-1190276:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22698974609375 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 23.876 1 22.087 21.587 22.587 -1.7886 0 0 0 0.22588 1 3860 3860 11.64 0.81637 1 33181 9973 22250 22265 32725 32725 -0.0021045968237558554 PGAGGALH 8 Unmodified _PGAGGALH_ 0 0 0 REV__ENSG00000204347|ENST00000375366|BTBD17 REV__ENSG00000204347|ENST00000375366|BTBD17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 340.19793701171875 2 340.179738 678.344923 NaN NaN NaN NaN NaN NaN NaN 23.396 1 21.843 21.343 22.343 -1.5532 0 0 0 0.23711 1 4035 4035 0.12286 0 1 + 33182 19527 22251 22266 32726 32726 -0.007115537138702166 PGAGGGGC 8 Unmodified _PGAGGGGC_ 0 0 0 ENSG00000225950|ENST00000593537|NTF4 ENSG00000225950|ENST00000593537|NTF4 ENSG00000225950|ENST00000593537|NTF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3153076171875 1 575.224222 574.216945 0.29023 0.00016695 -3.3319 -0.0019166 -3.0416 -0.0017496 575.2213443106434 129.64 0.20508 129.64 129.5 129.71 0 7 5 2 0 0 0 0.88047 1 25619 25619 0.79363 0 1 1397200 33183 7789 22252 22267 32727 32727 -0.08719437299407673 PGAGRQCPPP 10 Unmodified _PGAGRQCPPP_ 0 0 0 ENST00000398882.7_2_8:144648785-144649337:-|nuORF ENST00000398882.7_2_8:144648785-144649337:-|nuORF ENST00000398882.7_2_8:144648785-144649337:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2655029296875 2 490.242544 978.470534 0.36901 0.0001809 2.8155 0.0013803 3.1845 0.0015612 490.24548266349404 20.272 0.3842 18.875 18.688 19.072 -1.3966 13 10 2 0 0 0 0.664 1 3357 3357 14.838 1.3304 1 206890 33184 9488 22253 22268 32728 32728 -0.019562099199447402 PGAHPAIY 8 Unmodified _PGAHPAIY_ 0 0 0 HHIPL2|p.L457*|1|0.39|ENSG00000143512|chr1:222540090-222540090|A/-|frameshift_variant;ENSG00000143512|ENST00000343410|HHIPL2 HHIPL2|p.L457*|1|0.39|ENSG00000143512|chr1:222540090-222540090|A/-|frameshift_variant HHIPL2|p.L457*|1|0.39|ENSG00000143512|chr1:222540090-222540090|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 413.2168884277344 2 413.216321 824.418088 NaN NaN NaN NaN NaN NaN NaN 75.921 1 75.921 75.421 76.421 0 0 0 0 0.21486 1 14752 14752 6.3541 1.1234 1 33185 4498 22254 22269 32729 32729 -0.0011442499124996175 PGAHSPVP 8 Unmodified _PGAHSPVP_ 0 0 0 REV__ENST00000537858.1_1_5:134785537-134787916:-|nuORF REV__ENST00000537858.1_1_5:134785537-134787916:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2123107910156 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 64.184 1 60.927 60.427 61.427 -3.2567 0 0 0 0.21486 1 12047 12047 2.8892 0 1 + 33186 22830 22255 22270 32730 32730 -0.0029899802533464026 PGAHSPVP 8 Unmodified _PGAHSPVP_ 0 0 0 REV__ENST00000537858.1_1_5:134785537-134787916:-|nuORF REV__ENST00000537858.1_1_5:134785537-134787916:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2099304199219 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 67.558 1 64.231 63.731 64.731 -3.3268 0 0 0 0.23711 1 12740 12740 0.063987 0 1 + 33187 22830 22255 22270 32731 32731 -0.0029899802533464026 PGAHSPVP 8 Unmodified _PGAHSPVP_ 0 0 0 REV__ENST00000537858.1_1_5:134785537-134787916:-|nuORF REV__ENST00000537858.1_1_5:134785537-134787916:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2109069824219 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 97.256 1 93.336 92.836 93.836 -3.9194 0 0 0 0.23711 1 18664 18664 0.063987 0 1 + 33188 22830 22255 22270 32732 32732 -0.0029899802533464026 PGAHSPVP 8 Unmodified _PGAHSPVP_ 0 0 0 REV__ENST00000537858.1_1_5:134785537-134787916:-|nuORF REV__ENST00000537858.1_1_5:134785537-134787916:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2094421386719 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 128.16 1 123.42 122.92 123.92 -4.7408 0 0 0 0.2396 1 24659 24659 0.0082765 0 1 + 33189 22830 22255 22270 32733 32733 -0.0029899802533464026 PGAHVYEER 9 Unmodified _PGAHVYEER_ 0 0 0 nc|ENSG00000154025|A0PJK1-4|SLC5A10;nc|ENSG00000154025|A0PJK1-3|SLC5A10 nc|ENSG00000154025|A0PJK1-4|SLC5A10 nc|ENSG00000154025|A0PJK1-4|SLC5A10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.1966247558594 3 353.173562 1056.49886 -1.6334 -0.00057686 1.516 0.0005354 -0.1174 -4.1462E-05 353.17394779099914 19.873 0.86639 18.238 17.739 18.605 -1.6351 35 24 2 0 0 0 0.8825 1 3091 3091 0.23584 0.076522 1 597030 33190 12388 22256 22271 32734 32734 -0.027131887389941767 PGAIEMTWMD 10 Unmodified _PGAIEMTWMD_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B ENSG00000119541|ENST00000238497|VPS4B ENSG00000119541|ENST00000238497|VPS4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.316162109375 2 575.74901 1149.48347 0.29728 0.00017116 2.7733 0.0015967 3.0705 0.0017679 575.7489343255871 148.36 0.10364 148.36 148.29 148.4 0 4 2 2 0 0 0 0.91046 1 29695 29695 1.8442 0 1 1039900 33191 3084 22257 22272 32735 32735 -0.08529559642738604 PGAKAGDPH 9 Unmodified _PGAKAGDPH_ 0 0 0 ENST00000571861.5_1_17:78162196-78169468:+|nuORF;nc|ENSG00000141527|Q9BXL6-3|CARD14;ENST00000575500.5_2_17:78163648-78178987:+|nuORF;CARD14|p.P600Rfs*17|1|0.3|ENSG00000141527|chr17:80198536-80198536|C/-|frameshift_variant;nc|ENSG00000141527|Q9BXL6-2|CARD14;ENSG00000141527|ENST00000648509|CARD14 ENST00000571861.5_1_17:78162196-78169468:+|nuORF ENST00000571861.5_1_17:78162196-78169468:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2526550292969 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 106.19 1 106.19 105.69 106.69 0 0 0 0 0.23508 1 20873 20873 7.9102 2.1497 1 33192 390 22258 22273 32736 32736 -0.01620514484955038 PGAKAGDPH 9 Unmodified _PGAKAGDPH_ 0 0 0 ENST00000571861.5_1_17:78162196-78169468:+|nuORF;nc|ENSG00000141527|Q9BXL6-3|CARD14;ENST00000575500.5_2_17:78163648-78178987:+|nuORF;CARD14|p.P600Rfs*17|1|0.3|ENSG00000141527|chr17:80198536-80198536|C/-|frameshift_variant;nc|ENSG00000141527|Q9BXL6-2|CARD14;ENSG00000141527|ENST00000648509|CARD14 ENST00000571861.5_1_17:78162196-78169468:+|nuORF ENST00000571861.5_1_17:78162196-78169468:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2406311035156 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 115.95 1 111.46 110.96 111.96 -4.486 0 0 0 0.23508 1 22859 22859 7.9102 2.1497 1 33193 390 22258 22273 32737 32737 -0.01620514484955038 PGAKAGDPH 9 Unmodified _PGAKAGDPH_ 0 0 0 ENST00000571861.5_1_17:78162196-78169468:+|nuORF;nc|ENSG00000141527|Q9BXL6-3|CARD14;ENST00000575500.5_2_17:78163648-78178987:+|nuORF;CARD14|p.P600Rfs*17|1|0.3|ENSG00000141527|chr17:80198536-80198536|C/-|frameshift_variant;nc|ENSG00000141527|Q9BXL6-2|CARD14;ENSG00000141527|ENST00000648509|CARD14 ENST00000571861.5_1_17:78162196-78169468:+|nuORF ENST00000571861.5_1_17:78162196-78169468:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23828125 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 116.92 1 112.56 112.06 113.06 -4.3585 0 0 0 0.23508 1 22507 22507 4.3292 0 1 33194 390 22258 22273 32738 32738 -0.01620514484955038 PGAKPDQP 8 Unmodified _PGAKPDQP_ 0 0 0 REV__ENST00000464117.1_1_1:201857869-201860971:+|nuORF REV__ENST00000464117.1_1_1:201857869-201860971:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.310546875 2 405.211235 808.407917 0.010895 4.4147E-06 0.15058 6.1016E-05 0.16147 6.5431E-05 405.21123784329865 31.961 0.34329 31.961 31.809 32.153 0 13 9 2 0 0 0 1.0095 1 5826 5826 0.69038 0 1 892210 + 33195 19477 22259 22274 32739 32739 -0.003950327164830014 PGAKPGPE 8 Unmodified _PGAKPGPE_ 0 0 0 REV__DCTPP1|p.Q82Kfs*25|1|0.35|ENSG00000179958|chr16:30424502-30424502|G/-|frameshift_variant REV__DCTPP1|p.Q82Kfs*25|1|0.35|ENSG00000179958|chr16:30424502-30424502|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.705810546875 2 376.700503 751.386454 0.10851 4.0877E-05 -0.18588 -7.0021E-05 -0.077367 -2.9144E-05 376.70041205679206 43.83 1.2041 43.83 43.329 44.533 0 106 34 5 0 0 0 8448 1 8190 8190 3.2813 0 1 116000000 + 33196 13649 22260 22275 32740 32740 0.0008158225481338377 PGALAVEY 8 Unmodified _PGALAVEY_ 0 0 0 REV__ENSG00000105393|ENST00000598188|BABAM1 REV__ENSG00000105393|ENST00000598188|BABAM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.1760559082031 2 410.215986 818.417419 NaN NaN NaN NaN NaN NaN NaN 97.364 1 93.266 92.766 93.766 -4.0978 0 0 0 0.21486 1 19103 19103 10.183 3.8293 1 + 33197 14986 22261 22276 32741 32741 0.0009473556905277292 PGALDLRKNGY 11 Unmodified _PGALDLRKNGY_ 0 0 0 REV__ENSG00000047315|ENST00000314595|POLR2B REV__ENSG00000047315|ENST00000314595|POLR2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2789916992188 2 602.327662 1202.64077 NaN NaN NaN NaN NaN NaN NaN 84.379 1 80.47 79.97 80.97 -3.9093 0 0 0 0.23199 1 16037 16037 6.7232 0.99131 1 + 33198 14060 22262 22277 32742 32742 0.047556042833321044 PGALGCKL 8 Unmodified _PGALGCKL_ 0 0 0 ENSG00000170837|ENST00000304411|GPR27 ENSG00000170837|ENST00000304411|GPR27 ENSG00000170837|ENST00000304411|GPR27 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2146911621094 2 379.715099 757.415645 -0.022434 -8.5185E-06 0.6853 0.00026022 0.66287 0.0002517 379.71505384902747 45.316 0.81023 42.451 42.09 42.901 -2.8653 87 22 5 0 0 0 8448 1 8253 8253 6.2058 2.9245 1 21531000 33199 6101 22263 22278 32743 32743 0.02723403279435388 PGALGCKL 8 Unmodified _PGALGCKL_ 0 0 0 ENSG00000170837|ENST00000304411|GPR27 ENSG00000170837|ENST00000304411|GPR27 ENSG00000170837|ENST00000304411|GPR27 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 379.715099 757.415645 0.08721 3.3115E-05 -0.054678 -2.0762E-05 0.032533 1.2353E-05 379.714994605507 42.577 0.80397 42.577 42.183 42.987 0 0.074626 -0.00042951 NaN 6.2058 55 22 3 NaN NaN NaN NaN 0 NaN NaN 0 16686000 33200 6101 22263 22278 0.02723403279435388 PGALGCKL 8 Unmodified _PGALGCKL_ 0 0 0 ENSG00000170837|ENST00000304411|GPR27 ENSG00000170837|ENST00000304411|GPR27 ENSG00000170837|ENST00000304411|GPR27 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 379.715099 757.415645 -0.23004 -8.7351E-05 0.75501 0.00028669 0.52497 0.00019934 379.7151354289226 45.302 0.78156 42.512 42.13 42.912 -2.79 0.0091488 0.00018539 NaN 6.2058 87 21 5 NaN NaN NaN NaN 0 NaN NaN 0 31879000 33201 6101 22263 22278 0.02723403279435388 PGALGCKL 8 Unmodified _PGALGCKL_ 0 0 0 ENSG00000170837|ENST00000304411|GPR27 ENSG00000170837|ENST00000304411|GPR27 ENSG00000170837|ENST00000304411|GPR27 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 379.715099 757.415645 -0.78561 -0.00029831 1.4885 0.00056522 0.70292 0.00026691 379.7153659805443 45.338 0.98266 42.471 42.048 43.031 -2.8665 -0.031788 0.00074245 NaN 6.2058 91 27 5 NaN NaN NaN NaN 0 NaN NaN 0 15255000 33202 6101 22263 22278 0.02723403279435388 PGALLGGK 8 Unmodified _PGALLGGK_ 0 0 0 ENSG00000278803|ENST00000458091|PWWP4 ENSG00000278803|ENST00000458091|PWWP4 ENSG00000278803|ENST00000458091|PWWP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.06072998046875 2 356.721239 711.427924 -0.50286 -0.00017938 0.60412 0.0002155 0.10126 3.6122E-05 356.72141281738493 34.954 0.35174 32.56 32.388 32.74 -2.3938 17 9 2 0 0 0 1.0147 1 6415 6415 0.6015 0 1 487580 33203 8046 22264 22279 32744 32744 0.06066763014143817 PGALPKLN 8 Unmodified _PGALPKLN_ 0 0 0 tr|U7STG3|U7STG3_FUSNUAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gatBPE=3SV=1 tr|U7STG3|U7STG3_FUSNUAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gatBPE=3SV=1 tr|U7STG3|U7STG3_FUSNUAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gatBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.3001403808594 2 405.247621 808.480688 NaN NaN NaN NaN NaN NaN NaN 46.732 1 46.732 46.232 47.232 0 0 0 0 0.21486 1 8807 8807 2.8892 0 1 33204 26147 22265 22280 32745 32745 0.06878721076930105 PGAPEAGY 8 Unmodified _PGAPEAGY_ 0 0 0 REV__CIITA|p.G655Pfs*32|1|0.4|ENSG00000179583|chr16:10907447-10907448|-/CC|frameshift_variant REV__CIITA|p.G655Pfs*32|1|0.4|ENSG00000179583|chr16:10907447-10907448|-/CC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21221923828125 2 381.176861 760.339169 NaN NaN NaN NaN NaN NaN NaN 33.816 1 31.499 30.999 31.999 -2.3175 0 0 0 0.21486 1 6194 6194 10.183 0 1 + 33205 13437 22266 22281 32746 32746 -0.05058697016193037 PGAPGGPA 8 Unmodified _PGAPGGPA_ 0 0 0 IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;ENSG00000119669|ENST00000238647|IRF2BPL IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.775390625 1 623.314751 622.307475 0.74967 0.00046728 -0.23912 -0.00014905 0.51055 0.00031823 623.3146460283257 114.04 0.66022 109.73 109.47 110.13 -4.3136 23 18 2 0 0 0 1.0244 1 21970 21970 0.79363 0 1 1686900 33206 3091 22267 22282 32747 32747 -0.018786449794788496 PGAPGPGP 8 Unmodified _PGAPGPGP_ 0 0 0 ENST00000556821.5_1_14:23790825-23791302:+|nuORF;nc|ENSG00000100836|Q86U42-2|PABPN1;ENSG00000100836|ENST00000216727|PABPN1 REV__ENSG00000148704|ENST00000369206|VAX1 REV__ENSG00000148704|ENST00000369206|VAX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.1128234863281 2 325.168839 648.323125 NaN NaN NaN NaN NaN NaN NaN 32.735 1 30.505 30.005 31.005 -2.2305 0 0 0 0.21486 1 5974 5974 2.8892 0 1 33207 16986 22268 22283 32748 32748 -0.01510358462428485 PGAPLPPY 8 Unmodified _PGAPLPPY_ 0 0 0 REV__NKX6-1|p.L80Sfs*23|1|0.29|ENSG00000163623|chr4:84497992-84497992|C/-|frameshift_variant REV__NKX6-1|p.L80Sfs*23|1|0.29|ENSG00000163623|chr4:84497992-84497992|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 406.2226867675781 2 406.221072 810.42759 NaN NaN NaN NaN NaN NaN NaN 42.908 1 40.257 39.757 40.757 -2.651 0 0 0 0.21486 1 7735 7735 6.3541 0 1 + 33208 17591 22269 22284 32749 32749 0.014793432942724394 PGAPLPPY 8 Unmodified _PGAPLPPY_ 0 0 0 REV__NKX6-1|p.L80Sfs*23|1|0.29|ENSG00000163623|chr4:84497992-84497992|C/-|frameshift_variant REV__NKX6-1|p.L80Sfs*23|1|0.29|ENSG00000163623|chr4:84497992-84497992|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 406.2206115722656 2 406.221072 810.42759 NaN NaN NaN NaN NaN NaN NaN 42.855 1 40.249 39.749 40.749 -2.606 0 0 0 0.21486 1 7718 7718 6.3541 0 1 + 33209 17591 22269 22284 32750 32750 0.014793432942724394 PGAPLTQAAPG 11 Unmodified _PGAPLTQAAPG_ 0 0 0 REV__ENST00000255641.12_1_19:1941250-1969516:+|nuORF REV__ENST00000255641.12_1_19:1941250-1969516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2761535644531 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 67.519 1 67.519 67.019 68.019 0 0 0 0 0.18831 1 13053 13053 21.537 6.6987 1 + 33210 20128 22270 22285 32751 32751 0.023328834091330464 PGAPLVGQKVI 11 Unmodified _PGAPLVGQKVI_ 0 0 0 ENST00000424459.7_2_5:56469852-56471319:+|nuORF ENST00000424459.7_2_5:56469852-56471319:+|nuORF ENST00000424459.7_2_5:56469852-56471319:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 539.6848754882812 2 539.834591 1077.65463 0.32166 0.00017364 0.76496 0.00041295 1.0866 0.00058659 539.8347785037729 154.15 0.73495 149.38 149.12 149.85 -4.7684 32 20 2 0 0 0 0.9401 1 30629 30629 6.7232 2.3939 1 1939500 33211 9704 22271 22286 32752 32752 0.11890881782437646 PGAPPGPG 8 Unmodified _PGAPPGPG_ 0 0 0 ENSG00000166819|ENST00000300055|PLIN1 ENSG00000166819|ENST00000300055|PLIN1 ENSG00000166819|ENST00000300055|PLIN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.1129150390625 2 325.168839 648.323125 NaN NaN NaN NaN NaN NaN NaN 30.594 1 30.594 30.094 31.094 0 0 0 0 0.21486 1 5502 5502 2.8892 0 1 33212 5750 22272 22287 32753 32753 -0.015103584624171162 PGAPRVLRER 10 Unmodified _PGAPRVLRER_ 0 0 0 ENST00000305123.5_1_2:227663257-227663680:-|nuORF ENST00000305123.5_1_2:227663257-227663680:-|nuORF ENST00000305123.5_1_2:227663257-227663680:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3298950195312 2 575.843813 1149.67307 0.29754 0.00017134 -1.574 -0.0009064 -1.2765 -0.00073507 575.8428858929626 148.82 0.44467 148.82 148.68 149.13 0 16 12 2 0 0 0 0.91046 1 29817 29817 4.3292 4.3292 1 1920600 33213 8596 22273 22288 32754 32754 0.10422436476960684 PGAPSRTY 8 Unmodified _PGAPSRTY_ 0 0 0 ENSG00000114023|ENST00000477892|FAM162A ENSG00000114023|ENST00000477892|FAM162A ENSG00000114023|ENST00000477892|FAM162A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.251708984375 2 424.716685 847.418816 0.088286 3.7497E-05 -1.2868 -0.00054652 -1.1985 -0.00050902 424.7169750978758 26.015 0.41974 24.381 24.197 24.616 -1.6347 16 11 2 0 0 0 1.0244 1 4338 4338 0 0 1 232170 33214 2771 22274 22289 32755 32755 -0.010996303421961784 PGAQAPRPG 9 Unmodified _PGAQAPRPG_ 0 0 0 ENSG00000112941|ENST00000230859|TENT4A ENSG00000112941|ENST00000230859|TENT4A ENSG00000112941|ENST00000230859|TENT4A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2387390136719 2 425.730126 849.4457 0.11574 4.9276E-05 0.20381 8.6766E-05 0.31955 0.00013604 425.7301320564535 32.348 0.86964 32.348 31.945 32.815 0 40 24 2 0 0 0 0.8204 1 5971 5971 8.5933 0 1 1036200 33215 2718 22275 22290 32756 32756 0.014954782689983404 PGAQAPRPG 9 Unmodified _PGAQAPRPG_ 0 0 0 ENSG00000112941|ENST00000230859|TENT4A ENSG00000112941|ENST00000230859|TENT4A ENSG00000112941|ENST00000230859|TENT4A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 425.730126 849.4457 -0.29467 -0.00012545 0.59832 0.00025472 0.30365 0.00012927 425.73027274780486 34.477 0.83404 32.16 31.63 32.464 -2.3175 -0.061345 0.00016235 NaN 8.5933 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1025200 33216 2718 22275 22290 0.014954782689983404 PGAQAPRPG 9 Unmodified _PGAQAPRPG_ 0 0 0 ENSG00000112941|ENST00000230859|TENT4A ENSG00000112941|ENST00000230859|TENT4A ENSG00000112941|ENST00000230859|TENT4A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 425.730126 849.4457 0.10066 4.2854E-05 0.46447 0.00019774 0.56513 0.00024059 425.73022853222153 34.372 0.8782 32.156 31.633 32.511 -2.2158 -0.065245 4.8383E-05 NaN 8.5933 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 864880 33217 2718 22275 22290 0.014954782689983404 PGAQAYLLTVF 11 Unmodified _PGAQAYLLTVF_ 0 0 0 nc|ENSG00000076716|O75487-2|GPC4;ENSG00000076716|ENST00000370828|GPC4 nc|ENSG00000076716|O75487-2|GPC4 nc|ENSG00000076716|O75487-2|GPC4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2615356445312 2 590.324057 1178.63356 NaN NaN NaN NaN NaN NaN NaN 165.03 1 160.24 159.74 160.74 -4.7898 0 0 0 0.23018 1 33019 33019 8.1555 0 1 33218 1544 22276 22291 32757 32757 0.05138871682856916 PGAQYAANG 9 Unmodified _PGAQYAANG_ 0 0 0 REV__nc|ENSG00000163482|Q9NRP7-2|STK36 REV__nc|ENSG00000163482|Q9NRP7-2|STK36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2390441894531 2 424.698492 847.382431 0.23874 0.00010139 -0.48632 -0.00020654 -0.24758 -0.00010515 424.6982288148609 30.984 0.28199 28.91 28.779 29.061 -2.0743 12 7 2 0 0 0 0.67531 1 5339 5339 7.9102 0 1 428600 + 33219 17575 22277 22292 32758 32758 -0.04736507238908416 PGARCPAQ 8 Unmodified _PGARCPAQ_ 0 0 0 REV__ENST00000392346.6_2_17:80092036-80109722:-|nuORF REV__ENST00000392346.6_2_17:80092036-80109722:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.3500671386719 2 400.197605 798.380657 NaN NaN NaN NaN NaN NaN NaN 75.574 1 72.159 71.659 72.659 -3.4151 0 0 0 0.21486 1 14742 14742 5.7604 0 1 + 33220 21214 22278 22293 32759 32759 -0.02659839528507746 PGARFGPG 8 Unmodified _PGARFGPG_ 0 0 0 REV__nc|ENSG00000165643|Q5JUK2|SOHLH1 REV__nc|ENSG00000165643|Q5JUK2|SOHLH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 379.7016296386719 2 379.700838 757.387122 NaN NaN NaN NaN NaN NaN NaN 29.478 1 29.478 28.978 29.978 0 0 0 0 0.21486 1 5269 5269 6.3541 0 1 + 33221 14540 22279 22294 32760 32760 -0.0012757830546661353 PGASCWVLGWK 11 Unmodified _PGASCWVLGWK_ 0 0 0 nc|ENSG00000178226|Q5K4E3-3|PRSS36;ENSG00000178226|ENST00000268281|PRSS36 nc|ENSG00000178226|Q5K4E3-3|PRSS36 nc|ENSG00000178226|Q5K4E3-3|PRSS36 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3015747070312 2 602.302601 1202.59065 NaN NaN NaN NaN NaN NaN NaN 23.684 1 23.684 23.184 24.184 0 0 0 0 0.22943 1 4049 4049 8.7454 1.6437 1 33222 6569 22280 22295 32761 32761 -0.002542216461733915 PGASCWVLGWK 11 Unmodified _PGASCWVLGWK_ 0 0 0 nc|ENSG00000178226|Q5K4E3-3|PRSS36;ENSG00000178226|ENST00000268281|PRSS36 nc|ENSG00000178226|Q5K4E3-3|PRSS36 nc|ENSG00000178226|Q5K4E3-3|PRSS36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3018188476562 2 602.302601 1202.59065 0.22663 0.0001365 -0.9908 -0.00059676 -0.76417 -0.00046026 602.3019757339406 22.344 0.84542 20.89 20.595 21.44 -1.4535 72 23 5 0 0 0 0.46434 1 3517 3517 24.991 6.6179 1 25761000 33223 6569 22280 22295 32762 32762 -0.002542216461733915 PGASGAHH 8 Unmodified _PGASGAHH_ 0 0 0 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.1523742675781 2 367.172444 732.330336 NaN NaN NaN NaN NaN NaN NaN 83.235 1 79.362 78.862 79.862 -3.8736 0 0 0 0.23664 1 15808 15808 3.2813 3.1584 1 + 33224 15857 22281 22296 32763 32763 -0.04653625861999444 PGASVDRGHAP 11 Unmodified _PGASVDRGHAP_ 0 0 0 ENST00000605862.4_1_7:128255955-128262737:+|nuORF ENST00000605862.4_1_7:128255955-128262737:+|nuORF ENST00000605862.4_1_7:128255955-128262737:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2704467773438 2 532.267604 1062.52066 -0.77281 -0.00041134 3.0375 0.0016168 2.2647 0.0012054 532.2688918764582 20.739 0.31432 19.018 18.765 19.079 -1.7211 23 8 4 0 0 0 0.7348 1 3198 3198 9.3831 0.63772 1 2289800 33225 11739 22282 22297 32764 32764 -0.008103839904379129 PGASWDLK 8 Unmodified _PGASWDLK_ 0 0 0 nc|ENSG00000173253|Q9Y5R5-3|DMRT2;ENST00000382255.7_2_9:1055783-1057270:+|nuORF;ENST00000259622.10_2_9:1056133-1057270:+|nuORF;ENSG00000173253|ENST00000358146|DMRT2 nc|ENSG00000173253|Q9Y5R5-3|DMRT2 nc|ENSG00000173253|Q9Y5R5-3|DMRT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2361145019531 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 66.72 1 63.223 62.723 63.723 -3.4965 0 0 0 0.21323 1 12509 12509 14.582 4.3983 1 33226 6281 22283 22298 32765 32765 -0.0021045968238695423 PGATAGPG 8 Unmodified _PGATAGPG_ 0 0 0 nc|ENSG00000088881|Q9BQW3-1|EBF4 nc|ENSG00000088881|Q9BQW3-1|EBF4 nc|ENSG00000088881|Q9BQW3-1|EBF4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.15960693359375 2 314.158471 626.30239 NaN NaN NaN NaN NaN NaN NaN 75.835 1 72.112 71.612 72.612 -3.7227 0 0 0 0.21486 1 14349 14349 2.8892 0 1 33227 12245 22284 22299 32766 32766 -0.025709488420829985 PGATVRDEA 9 Unmodified _PGATVRDEA_ 0 0 0 REV__ENSG00000160111|ENST00000443236|CPAMD8 REV__ENSG00000160111|ENST00000443236|CPAMD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2306823730469 2 458.230156 914.445759 0.30863 0.00014142 0.016522 7.5709E-06 0.32515 0.00014899 458.2301580760358 27.92 0.48119 27.92 27.631 28.113 0 30 13 3 0 0 0 0.40602 1 4907 4907 25.399 3.6527 1 3567100 + 33228 17394 22285 22300 32767 32767 -0.014885665216752386 PGATVRDEA 9 Unmodified _PGATVRDEA_ 0 0 0 REV__ENSG00000160111|ENST00000443236|CPAMD8 REV__ENSG00000160111|ENST00000443236|CPAMD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2316589355469 2 458.230156 914.445759 0.29872 0.00013688 -0.079651 -3.6499E-05 0.21907 0.00010038 458.23007197269425 29.628 0.52203 27.735 27.439 27.961 -1.8928 33 14 3 0 0 0 0.5059 1 5010 5010 19.257 0 1 6266200 + 33229 17394 22285 22300 32768 32768 -0.014885665216752386 PGATYATVTV 10 Unmodified _PGATYATVTV_ 0 0 0 REV__ENSG00000185176|ENST00000407834|AQP12B REV__ENSG00000185176|ENST00000407834|AQP12B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25909423828125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 166.57 1 161.62 161.12 162.12 -4.9484 0 0 0 0.22569 1 32658 32658 15.847 1.2655 1 + 33230 18946 22286 22301 32769 32769 0.012100613149982564 PGAVEQPE 8 Unmodified _PGAVEQPE_ 0 0 0 REV__ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant REV__ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 414.2702331542969 2 413.7007 825.386848 0.082849 3.4275E-05 -0.095715 -3.9597E-05 -0.012866 -5.3228E-06 413.70053547145335 24.606 0.851 24.606 24.267 25.118 0 30 24 2 0 0 0 1.0244 1 4181 4181 2.8892 0 1 556690 + 33231 12936 22287 22302 32770 32770 -0.032830428159968505 PGAVEQPE 8 Unmodified _PGAVEQPE_ 0 0 0 REV__ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant REV__ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 413.7007 825.386848 0.95302 0.00039426 -1.1151 -0.00046131 -0.16207 -6.7048E-05 413.70013583390534 25.921 0.98909 24.273 24.071 25.06 -1.6482 -0.16662 -0.0005023 NaN 2.8892 33 28 2 NaN NaN NaN NaN 0 NaN NaN 0 445950 + 33232 12936 22287 22302 -0.032830428159968505 PGAVGFNK 8 Unmodified _PGAVGFNK_ 0 0 0 tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1 tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1 tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.2073974609375 2 395.216321 788.418088 NaN NaN NaN NaN NaN NaN NaN 49.758 1 46.877 46.377 47.377 -2.8811 0 0 0 0.21486 1 9430 9430 2.8892 0 1 33233 26434 22288 22303 32771 32771 0.015415750087527158 PGAVLLAQPG 10 Unmodified _PGAVLLAQPG_ 0 0 0 TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant;ENSG00000166848|ENST00000300086|TERF2IP TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.52435302734375 2 461.77146 921.528367 NaN NaN NaN NaN NaN NaN NaN 17.416 1 16.143 15.643 16.643 -1.2722 0 0 0 0.22588 1 2563 2563 4.3292 0 1 33234 5754 22289 22304 32772 32772 0.0644637527714167 PGAVPVLP 8 Unmodified _PGAVPVLP_ 0 0 0 EPS15L1|p.P231Hfs*37|1|0.27|ENSG00000127527|chr19:16425183-16425183|G/-|frameshift_variant;nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1 EPS15L1|p.P231Hfs*37|1|0.27|ENSG00000127527|chr19:16425183-16425183|G/-|frameshift_variant EPS15L1|p.P231Hfs*37|1|0.27|ENSG00000127527|chr19:16425183-16425183|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21624755859375 2 375.231439 748.448326 -0.11212 -4.2072E-05 -1.9419 -0.00072866 -2.054 -0.00077073 375.23060355941095 25.137 0.24427 25.137 25.046 25.29 0 9 6 2 0 0 0 8448 1 4338 4338 1.3295 1.3295 1 498330 33235 3479 22290 22305 32773 32773 0.0640393367393699 PGAWPGPTH 9 Unmodified _PGAWPGPTH_ 0 0 0 REV__ENST00000479371.5_1_9:139697227-139701184:+|nuORF REV__ENST00000479371.5_1_9:139697227-139701184:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24652099609375 2 460.224677 918.434801 0.35948 0.00016544 -1.06 -0.00048786 -0.70057 -0.00032242 460.222292708459 34.421 0.14256 32.205 32.122 32.264 -2.2158 5 3 2 0 0 0 0.8204 1 6028 6028 4.756 2.1785 1 187860 + 33236 22151 22291 22306 32774 32774 -0.027679241052965153 PGCASKVV 8 Unmodified _PGCASKVV_ 0 0 0 REV__ENSG00000183346|ENST00000648843|CABCOCO1 REV__ENSG00000183346|ENST00000648843|CABCOCO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21356201171875 2 380.704731 759.39491 0.51532 0.00019619 -0.60986 -0.00023218 -0.094539 -3.5992E-05 380.7044566707098 28.646 0.54718 26.69 26.434 26.981 -1.9561 25 15 2 0 0 0 8448 1 5118 5118 0.063987 0 1 856030 + 33237 18830 22292 22307 32775 32775 0.00558812899782879 PGCGCCMTC 9 Unmodified _PGCGCCMTC_ 0 0 0 ENSG00000115461|ENST00000233813|IGFBP5 ENSG00000115461|ENST00000233813|IGFBP5 ENSG00000115461|ENST00000233813|IGFBP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.6235046386719 2 437.622855 873.231157 NaN NaN NaN NaN NaN NaN NaN 46.069 1 46.069 45.569 46.569 0 0 0 0 0.23508 1 8673 8673 2.3027 1.5091 1 33238 2857 22293 22308 32776 32776 -0.2105293552093599 PGDKSKAF 8 Unmodified _PGDKSKAF_ 0 0 0 SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9;ENST00000515685.1_1_17:49075803-49079083:-|nuORF;ENST00000513827.5_1_17:49073859-49079083:-|nuORF SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2350769042969 2 425.226885 848.439217 0.062552 2.6599E-05 -2.1915 -0.0009319 -2.129 -0.0009053 425.22619661373665 142.81 0.52672 137.79 137.58 138.11 -5.0261 33 14 3 0 0 0 0.71273 1 27589 27589 12.532 3.1841 1 6858100 33239 1041 22294 22309 32777 32777 0.0089354031762241 PGDPGRPGP 9 Unmodified _PGDPGRPGP_ 0 0 0 COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant;ENSG00000196739|ENST00000356083|COL27A1;COL27A1|p.E1076Sfs*7|1|0.43|ENSG00000196739|chr9:114264382-114264382|G/-|frameshift_variant;COL27A1|p.E980K|1|0.21|ENSG00000196739|chr9:114245869-114245869|G/A|missense_variant;ENST00000485397.1_1_9:117002547-117008196:+|nuORF;ENST00000494090.6_1_9:116999272-117027356:+|nuORF COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2391662597656 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 20.157 1 18.76 18.26 19.26 -1.3966 0 0 0 0.23508 1 3356 3356 11.64 1.5664 1 33240 625 22295 22310 32778 32778 -0.01620514484955038 PGDWHCPR 8 Unmodified _PGDWHCPR_ 0 0 0 REV__ENST00000531150.5_1_1:26508531-26510633:+|nuORF REV__ENST00000531150.5_1_1:26508531-26510633:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.14666748046875 3 323.14495 966.413019 NaN NaN NaN NaN NaN NaN NaN 136.78 1 131.86 131.36 132.36 -4.9216 0 0 0 0.21486 1 26290 26290 0.45834 0.2225 1 + 33241 22765 22296 22311 32779 32779 -0.07153052125511294 PGECELKPA 9 Unmodified _PGECELKPA_ 0 0 0 REV__ENST00000424393.5_1_22:22330058-22337149:-|nuORF REV__ENST00000424393.5_1_22:22330058-22337149:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1806640625 3 315.156632 942.448068 NaN NaN NaN NaN NaN NaN NaN 72.807 1 69.268 68.768 69.768 -3.5385 0 0 0 0.23508 1 13806 13806 2.7352 0 1 + 33242 21545 22297 22312 32780 32780 -0.025458541082230113 PGECELKPA 9 Unmodified _PGECELKPA_ 0 0 0 REV__ENST00000424393.5_1_22:22330058-22337149:-|nuORF REV__ENST00000424393.5_1_22:22330058-22337149:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1568298339844 3 315.156632 942.448068 NaN NaN NaN NaN NaN NaN NaN 85.44 1 81.728 81.228 82.228 -3.7117 0 0 0 0.23508 1 16323 16323 2.7352 0 1 + 33243 21545 22297 22312 32781 32781 -0.025458541082230113 PGECELKPA 9 Unmodified _PGECELKPA_ 0 0 0 REV__ENST00000424393.5_1_22:22330058-22337149:-|nuORF REV__ENST00000424393.5_1_22:22330058-22337149:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1568908691406 3 315.156632 942.448068 NaN NaN NaN NaN NaN NaN NaN 88.019 1 84.269 83.769 84.769 -3.7501 0 0 0 0.23508 1 16844 16844 2.7352 0 1 + 33244 21545 22297 22312 32782 32782 -0.025458541082230113 PGEEEEEEEEE 11 Unmodified _PGEEEEEEEEE_ 0 0 0 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2;REV__ENSG00000114853|ENST00000232974|ZBTB47 REV__ENSG00000114853|ENST00000232974|ZBTB47 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 668.1776733398438 2 667.741342 1333.46813 0.64279 0.00042922 -2.7841 -0.0018591 -2.1413 -0.0014299 667.7402273349065 41.044 0.56314 38.409 38.113 38.677 -2.6348 20 15 2 0 0 0 0.96205 1 7601 7601 0.35063 0 1 1358200 + 33245 15391;17021 22298 22313 32783 32783 -0.18526521215858338 PGEMDNDED 9 Unmodified _PGEMDNDED_ 0 0 0 REV__ENSG00000087301|ENST00000281741|TXNDC16 REV__ENSG00000087301|ENST00000281741|TXNDC16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 341.2158203125 3 341.118683 1020.33422 NaN NaN NaN NaN NaN NaN NaN 121.99 1 117.31 116.81 117.81 -4.6873 0 0 0 0.19622 1 23421 23421 0.073264 0 1 + 33246 14500 22299 22314 32784 32784 -0.17513413731774108 PGEQAHQRHGS 11 Unmodified _PGEQAHQRHGS_ 0 0 0 REV__chr9:129609178-129634054|404|13.56|0.15|6.46|+|0|NTMT1,NTMT1|1 REV__chr9:129609178-129634054|404|13.56|0.15|6.46|+|0|NTMT1,NTMT1|1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2822265625 2 602.284317 1202.55408 NaN NaN NaN NaN NaN NaN NaN 77.935 1 74.276 73.776 74.776 -3.6588 0 0 0 0.23018 1 14844 14844 8.1555 0.24537 1 + 33247 13427 22300 22315 32785 32785 -0.03909382218535029 PGGAGHGA 8 Unmodified _PGGAGHGA_ 0 0 0 REV__ENSG00000127526|ENST00000595753|SLC35E1 REV__ENSG00000127526|ENST00000595753|SLC35E1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7756958007812 1 623.289599 622.282323 0.64067 0.00039932 -2.4479 -0.0015258 -1.8073 -0.0011264 623.2890459905041 159.38 0.10809 154.11 154.06 154.16 -5.2712 4 2 2 0 0 0 1.0268 1 30915 30915 0.79363 0 1 2208900 + 33248 15890 22301 22316 32786 32786 -0.04392699782044929 PGGAGNIK 8 Unmodified _PGGAGNIK_ 0 0 0 ENST00000442459.2_1_1:16342077-16343748:-|nuORF;ENSG00000173641|ENST00000311890|HSPB7;nc|ENSG00000173641|Q9UBY9-2|HSPB7 ENST00000442459.2_1_1:16342077-16343748:-|nuORF ENST00000442459.2_1_1:16342077-16343748:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5567932128906 2 357.20067 712.386788 NaN NaN NaN NaN NaN NaN NaN 67.341 1 64.233 63.733 64.733 -3.1086 0 0 0 0.2343 1 13060 13060 1.7423 0 1 33249 6303 22302 22317 32787 32787 0.01909001974649982 PGGAHRQWWQG 11 Unmodified _PGGAHRQWWQG_ 0 0 0 REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 640.4215087890625 2 640.307595 1278.60064 0.42903 0.00027471 1.2367 0.00079186 1.6657 0.0010666 640.8078744087744 164.58 0.17395 159.54 159.45 159.63 -5.0446 5 4 2 0 0 0 0.94712 1 32087 32087 3.2813 0 1 4829800 + 33250 21363 22303 22318 32788 32788 -0.027518975965904247 PGGCSCDH 8 Unmodified _PGGCSCDH_ 0 0 0 ENSG00000178235|ENST00000674365|SLITRK1;SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant ENSG00000178235|ENST00000674365|SLITRK1 ENSG00000178235|ENST00000674365|SLITRK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 388.1910400390625 2 388.128531 774.242508 NaN NaN NaN NaN NaN NaN NaN 15.91 1 14.688 14.188 15.188 -1.2219 0 0 0 0.2396 1 2261 2261 0 0 1 33251 6572 22304 22319 32789 32789 -0.1536433083929296 PGGCSCDH 8 Unmodified _PGGCSCDH_ 0 0 0 ENSG00000178235|ENST00000674365|SLITRK1;SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant ENSG00000178235|ENST00000674365|SLITRK1 ENSG00000178235|ENST00000674365|SLITRK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 388.0152893066406 2 388.128531 774.242508 NaN NaN NaN NaN NaN NaN NaN 18.165 1 16.893 16.393 17.393 -1.2722 0 0 0 0.2396 1 2712 2712 0 0 1 33252 6572 22304 22319 32790 32790 -0.1536433083929296 PGGFGGPG 8 Unmodified _PGGFGGPG_ 0 0 0 REV__ENST00000551454.1_1_10:94449743-94451337:+|nuORF;REV__CON__Q3TTY5 REV__ENST00000551454.1_1_10:94449743-94451337:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.18255615234375 2 323.153189 644.291825 NaN NaN NaN NaN NaN NaN NaN 35.414 1 33.137 32.637 33.637 -2.2766 0 0 0 0.2396 1 6226 6226 0.12286 0 1 + + 33253 17124;13546 22305 22320 32791 32791 -0.04454931496525205 PGGFPPGDSH 10 Unmodified _PGGFPPGDSH_ 0 0 0 ENST00000303407.11_3_9:136896778-136897270:-|nuORF ENST00000303407.11_3_9:136896778-136897270:-|nuORF ENST00000303407.11_3_9:136896778-136897270:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.14898681640625 3 323.147125 966.419545 NaN NaN NaN NaN NaN NaN NaN 95.64 1 91.59 91.09 92.09 -4.0496 0 0 0 0.22588 1 18749 18749 0.77653 0.31819 1 33254 8587 22306 22321 32792 32792 -0.06500835693145746 PGGFYFDDE 9 Unmodified _PGGFYFDDE_ 0 0 0 REV__ENSG00000134323|ENST00000281043|MYCN REV__ENSG00000134323|ENST00000281043|MYCN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.68603515625 2 523.708722 1045.40289 NaN NaN NaN NaN NaN NaN NaN 145.69 1 141 140.5 141.5 -4.6868 0 0 0 0.19636 1 28882 28882 2.4985 2.2916 1 + 33255 16206 22307 22322 32793 32793 -0.11799381369769435 PGGGAGHA 8 Unmodified _PGGGAGHA_ 0 0 0 REV__ENSG00000125753|ENST00000245932|VASP REV__ENSG00000125753|ENST00000245932|VASP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.766357421875 1 623.289599 622.282323 0.40272 0.00025101 2.5056 0.0015617 2.9083 0.0018127 623.2947418498671 144.65 0.14217 144.65 144.54 144.68 0 5 3 2 0 0 0 1.0035 1 28886 28886 6.3541 0 1 1355500 + 33256 15826 22308 22323 32794 32794 -0.043926997820562974 PGGGAGHA 8 Unmodified _PGGGAGHA_ 0 0 0 REV__ENSG00000125753|ENST00000245932|VASP REV__ENSG00000125753|ENST00000245932|VASP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7722778320312 1 623.289599 622.282323 0.36754 0.00022909 -0.035559 -2.2164E-05 0.33199 0.00020692 623.2926382285317 150.18 0.13797 144.98 144.88 145.02 -5.1994 5 3 2 0 0 0 0.9003 1 29100 29100 0 0 1 2131900 + 33257 15826 22308 22323 32795 32795 -0.043926997820562974 PGGGASSS 8 Unmodified _PGGGASSS_ 0 0 0 REV__ENST00000357227.8_1_X:47078104-47078479:+|nuORF REV__ENST00000357227.8_1_X:47078104-47078479:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1370849609375 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 144.24 1 144.24 143.74 144.74 0 0 0 0 0.21486 1 28813 28813 0.69038 0 1 + 33258 20824 22309 22324 32796 32796 -0.0634812960141744 PGGGASSS 8 Unmodified _PGGGASSS_ 0 0 0 REV__ENST00000357227.8_1_X:47078104-47078479:+|nuORF REV__ENST00000357227.8_1_X:47078104-47078479:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.13623046875 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 148.83 1 144.13 143.63 144.63 -4.7095 0 0 0 0.21486 1 29558 29558 0.69038 0 1 + 33259 20824 22309 22324 32797 32797 -0.0634812960141744 PGGGASSS 8 Unmodified _PGGGASSS_ 0 0 0 REV__ENST00000357227.8_1_X:47078104-47078479:+|nuORF REV__ENST00000357227.8_1_X:47078104-47078479:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1365966796875 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 149.12 1 144.41 143.91 144.91 -4.7095 0 0 0 0.21486 1 29616 29616 0.69038 0 1 + 33260 20824 22309 22324 32798 32798 -0.0634812960141744 PGGGDAGP 8 Unmodified _PGGGDAGP_ 0 0 0 ENST00000379661.7_1_16:57790963-57791023:+|nuORF ENST00000379661.7_1_16:57790963-57791023:+|nuORF ENST00000379661.7_1_16:57790963-57791023:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1396484375 2 314.140279 626.266004 NaN NaN NaN NaN NaN NaN NaN 35.556 1 33.303 32.803 33.803 -2.2527 0 0 0 0.21486 1 6267 6267 6.3541 0 1 33261 9303 22310 22325 32799 32799 -0.06207825738806605 PGGGFAGA 8 Unmodified _PGGGFAGA_ 0 0 0 ENST00000534012.1_1_6:135264967-135265117:-|nuORF ENST00000534012.1_1_6:135264967-135265117:-|nuORF ENST00000534012.1_1_6:135264967-135265117:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.03192138671875 2 317.153189 632.291825 -0.28608 -9.0731E-05 0.35654 0.00011308 0.070456 2.2345E-05 317.1532762218494 41.538 0.44888 41.538 41.412 41.861 0 17 12 2 0 0 0 1.028 1 7817 7817 0.79363 0 1 644350 33262 11001 22311 22326 32800 32800 -0.03902931496520523 PGGGFAGA 8 Unmodified _PGGGFAGA_ 0 0 0 ENST00000534012.1_1_6:135264967-135265117:-|nuORF ENST00000534012.1_1_6:135264967-135265117:-|nuORF ENST00000534012.1_1_6:135264967-135265117:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.15264892578125 2 317.153189 632.291825 -0.76792 -0.00024355 0.94364 0.00029928 0.17572 5.573E-05 317.15344409271006 44.452 0.48706 41.704 41.43 41.917 -2.7475 17 13 2 0 0 0 0.88047 1 8054 8054 0.79363 0 1 599960 33263 11001 22311 22326 32801 32801 -0.03902931496520523 PGGGFAGA 8 Unmodified _PGGGFAGA_ 0 0 0 ENST00000534012.1_1_6:135264967-135265117:-|nuORF ENST00000534012.1_1_6:135264967-135265117:-|nuORF ENST00000534012.1_1_6:135264967-135265117:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 317.153189 632.291825 -0.31859 -0.00010104 0.56702 0.00017983 0.24843 7.879E-05 317.1533048661052 44.389 0.49193 41.599 41.392 41.884 -2.79 -0.014322 -3.1383E-05 NaN 0.79363 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 791420 33264 11001 22311 22326 -0.03902931496520523 PGGGGDDG 8 Unmodified _PGGGGDDG_ 0 0 0 ENSG00000135045|ENST00000376854|C9orf40 ENSG00000135045|ENST00000376854|C9orf40 ENSG00000135045|ENST00000376854|C9orf40 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7587280273438 1 631.23181 630.224533 0.42923 0.00027094 0.053732 3.3917E-05 0.48296 0.00030486 631.2293099959147 170.86 0.10329 165.95 165.86 165.96 -4.9149 4 2 2 0 0 0 1.028 1 33789 33789 0 0 1 1814800 33265 3893 22312 22327 32802 32802 -0.10537006498122992 PGGGGGDN 8 Unmodified _PGGGGGDN_ 0 0 0 nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2;nc|ENSG00000179912|Q9Y2K5-3|R3HDM2;nc|ENSG00000179912|Q9Y2K5-2|R3HDM2 nc|ENSG00000179912|Q9Y2K5|R3HDM2 nc|ENSG00000179912|Q9Y2K5|R3HDM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7670288085938 1 630.247794 629.240518 1.1527 0.00072646 1.8178 0.0011457 2.9705 0.0018721 630.251514096667 122.78 0.17747 118.22 118.07 118.25 -4.5643 5 4 2 0 0 0 1.028 1 24191 24191 0 0 1 765260 33266 6648 22313 22328 32803 32803 -0.08893300261240711 PGGGLQRA 8 Unmodified _PGGGLQRA_ 0 0 0 ENST00000301332.2_1_8:145694996-145697528:+|nuORF ENST00000301332.2_1_8:145694996-145697528:+|nuORF ENST00000301332.2_1_8:145694996-145697528:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.2113342285156 2 378.211569 754.408586 NaN NaN NaN NaN NaN NaN NaN 73.104 1 73.104 72.604 73.604 0 0 0 0 0.23312 1 14189 14189 6.2058 0 1 33267 8558 22314 22329 32804 32804 0.021558067232263056 PGGGPHPS 8 Unmodified _PGGGPHPS_ 0 0 0 nc|ENSG00000137266|A1A5C7-4|SLC22A23;SLC22A23|p.E648Sfs*36|1|0.22|ENSG00000137266|chr6:3273174-3273174|C/-|frameshift_variant;ENSG00000137266|ENST00000406686|SLC22A23 nc|ENSG00000137266|A1A5C7-4|SLC22A23 nc|ENSG00000137266|A1A5C7-4|SLC22A23 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 353.1587829589844 2 353.16937 704.324188 NaN NaN NaN NaN NaN NaN NaN 84.028 1 80.118 79.618 80.618 -3.9093 0 0 0 0.23899 1 15971 15971 1.3295 0 1 33268 4075 22315 22330 32805 32805 -0.03980144093520721 PGGGVLAG 8 Unmodified _PGGGVLAG_ 0 0 0 HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant;ENSG00000153976|ENST00000284110|HS3ST3A1 HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.3128662109375 2 314.176664 626.338775 -0.43979 -0.00013817 0.86587 0.00027204 0.42608 0.00013386 314.1767743342595 27.907 0.38255 25.911 25.752 26.134 -1.9962 15 10 2 0 0 0 1.0268 1 4661 4661 2.8892 0 1 308460 33269 4988 22316 22331 32806 32806 0.010659280546292393 PGGLVPFIQLY 11 Unmodified _PGGLVPFIQLY_ 0 0 0 ENST00000448373.6_1_19:37068233-37068374:+|nuORF ENST00000448373.6_1_19:37068233-37068374:+|nuORF ENST00000448373.6_1_19:37068233-37068374:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.29638671875 2 602.342249 1202.66995 NaN NaN NaN NaN NaN NaN NaN 156.97 1 151.7 151.2 152.2 -5.2712 0 0 0 0.2268 1 30449 30449 10.824 2.3796 1 33270 9954 22317 22332 32807 32807 0.07671748579628002 PGGNVSRY 8 Unmodified _PGGNVSRY_ 0 0 0 REV__ENSG00000169851|ENST00000695919|PCDH7 REV__ENSG00000169851|ENST00000695919|PCDH7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2484130859375 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 36.797 1 34.459 33.959 34.959 -2.3375 0 0 0 0.21486 1 6500 6500 8.5933 1.8701 1 + 33271 18120 22318 22333 32808 32808 -0.01620514484955038 PGGNVSRY 8 Unmodified _PGGNVSRY_ 0 0 0 REV__ENSG00000169851|ENST00000695919|PCDH7 REV__ENSG00000169851|ENST00000695919|PCDH7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24853515625 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 101.21 1 97.218 96.718 97.718 -3.9895 0 0 0 0.23487 1 19448 19448 0.62683 0 1 + 33272 18120 22318 22333 32809 32809 -0.01620514484955038 PGGQHGGD 8 Unmodified _PGGQHGGD_ 0 0 0 MOGS|p.P294Lfs*11|1|0.44|ENSG00000115275|chr2:74462908-74462908|G/-|frameshift_variant;MOGS|p.P513Qfs*7|1|0.57|ENSG00000115275|chr2:74462251-74462251|G/-|frameshift_variant;nc|ENSG00000115275|Q13724-2|MOGS;MOGS|p.Y749Tfs*44|1|0.51|ENSG00000115275|chr2:74461545-74461545|G/-|frameshift_variant;ENSG00000115275|ENST00000448666|MOGS MOGS|p.P294Lfs*11|1|0.44|ENSG00000115275|chr2:74462908-74462908|G/-|frameshift_variant MOGS|p.P294Lfs*11|1|0.44|ENSG00000115275|chr2:74462908-74462908|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 724.070556640625 1 724.300892 723.293616 0.94061 0.00068128 0.65141 0.00047182 1.592 0.0011531 724.3062907063614 169.94 0.20233 165.15 164.97 165.17 -4.7898 6 5 2 0 0 0 0.89967 1 34426 34426 0.0082765 0 1 15526000 33273 2840 22319 22334 32810 32810 -0.07909922478563658 PGGRPPPP 8 Unmodified _PGGRPPPP_ 0 0 0 ENSG00000127528|ENST00000248071|KLF2 ENSG00000127528|ENST00000248071|KLF2 ENSG00000127528|ENST00000248071|KLF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7156066894531 2 387.716488 773.418422 NaN NaN NaN NaN NaN NaN NaN 86.409 1 82.682 82.182 83.182 -3.727 0 0 0 0.23711 1 16891 16891 0.063987 0 1 33274 3480 22320 22335 32811 32811 0.022649947286026872 PGGSLDLVSA 10 Unmodified _PGGSLDLVSA_ 0 0 0 IQCJ-SCHIP1|p.R259Sfs*39|1|0.29|ENSG00000283154|chr3:159866175-159866178|GAGA/-|frameshift_variant;nc|ENSG00000283154|P0DPB3-2|SCHIP1;ENSG00000283154|ENST00000638749|IQCJ-SCHIP1;nc|ENSG00000283154|B3KU38-2|IQCJ-SCHIP1;nc|ENSG00000283154|B3KU38|IQCJ-SCHIP1;IQCJ-SCHIP1|p.Q158Rfs*141|1|0.22|ENSG00000283154|chr3:159764847-159764847|C/-|frameshift_variant IQCJ-SCHIP1|p.R259Sfs*39|1|0.29|ENSG00000283154|chr3:159866175-159866178|GAGA/-|frameshift_variant;IQCJ-SCHIP1|p.Q158Rfs*141|1|0.22|ENSG00000283154|chr3:159764847-159764847|C/-|frameshift_variant IQCJ-SCHIP1|p.R259Sfs*39|1|0.29|ENSG00000283154|chr3:159866175-159866178|GAGA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2236328125 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 88.056 1 84.264 83.764 84.764 -3.7926 0 0 0 0.18733 1 17221 17221 30.637 3.7529 1 33275 8053;11952 22321 22336 32812 32812 0.010254882809135779 PGGSPGGC 8 Unmodified _PGGSPGGC_ 0 0 0 NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant;nc|ENSG00000072736|Q12968-5|NFATC3;nc|ENSG00000072736|Q12968-6|NFATC3;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-3|NFATC3;nc|ENSG00000072736|Q12968-2|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;ENSG00000072736|ENST00000346183|NFATC3;ENST00000569766.5_1_16:68118971-68260371:+|nuORF NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant NFATC3|p.L634Sfs*2|1|0.27|ENSG00000072736|chr16:68174493-68174494|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.8279418945312 1 631.250437 630.24316 0.42915 0.0002709 3.8866 0.0024534 4.3158 0.0027243 631.254294674828 167.41 0.17114 162.46 162.36 162.53 -4.948 6 4 2 0 0 0 1.0249 1 32913 32913 0.69038 0.69038 1 12663000 33276 1472 22322 22337 32813 32813 -0.0867516812793383 PGGTGNLR 8 Unmodified _PGGTGNLR_ 0 0 0 REV__nc|ENSG00000157168|Q02297-12|NRG1 REV__nc|ENSG00000157168|Q02297-12|NRG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 386.2102966308594 2 386.209027 770.403501 NaN NaN NaN NaN NaN NaN NaN 54.234 1 51.096 50.596 51.596 -3.1377 0 0 0 0.21486 1 10031 10031 12.532 0 1 + 33277 17286 22323 22338 32814 32814 0.009115028606174747 PGGVKVVEM 9 Unmodified _PGGVKVVEM_ 0 0 0 REV__PFAS|p.D615Mfs*45|1|0.41|ENSG00000178921|chr17:8264259-8264259|G/-|frameshift_variant REV__PFAS|p.D615Mfs*45|1|0.41|ENSG00000178921|chr17:8264259-8264259|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2301025390625 2 458.252046 914.489538 0.39546 0.00018122 -0.073423 -3.3646E-05 0.32204 0.00014757 458.25203275696055 21.58 0.74733 20.106 19.701 20.448 -1.4742 44 20 4 0 0 0 0.77732 1 3676 3676 18.135 3.5533 1 20834000 + 33278 18626 22324 22339 32815 32815 0.028873266511141082 PGGVPSPA 8 Unmodified _PGGVPSPA_ 0 0 0 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.1521301269531 2 341.181946 680.34934 NaN NaN NaN NaN NaN NaN NaN 38.538 1 35.989 35.489 36.489 -2.5491 0 0 0 0.2396 1 7147 7147 0.0082765 0 1 33279 4005 22325 22340 32816 32816 -0.0036208929095664644 PGHAGGAA 8 Unmodified _PGHAGGAA_ 0 0 0 ENST00000380151.3_1_9:21971004-21974448:-|nuORF;nc|ENSG00000147889|Q8N726-2|CDKN2A;ENST00000497750.1_2_9:21971004-21971391:-|nuORF;ENST00000578845.2_2_9:21971004-21971304:-|nuORF;nc|ENSG00000147889|Q8N726|CDKN2A ENST00000380151.3_1_9:21971004-21974448:-|nuORF ENST00000380151.3_1_9:21971004-21974448:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.15496826171875 2 319.156263 636.297973 NaN NaN NaN NaN NaN NaN NaN 63.777 1 60.361 59.861 60.861 -3.4158 0 0 0 0.2396 1 11922 11922 0.0082765 0 1 33280 9312 22326 22341 32817 32817 -0.034724132650126194 PGHAWRPGRPL 11 Unmodified _PGHAWRPGRPL_ 0 0 0 REV__nc|ENSG00000133619|A5PL33-3|KRBA1 REV__nc|ENSG00000133619|A5PL33-3|KRBA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.3430786132812 2 622.343981 1242.67341 NaN NaN NaN NaN NaN NaN NaN 34.35 1 32.134 31.634 32.634 -2.2158 0 0 0 0.23594 1 6018 6018 3.5965 1.5367 1 + 33281 16171 22327 22342 32818 32818 0.061778561968367285 PGHTPVTSLA 10 Unmodified _PGHTPVTSLA_ 0 0 0 ENST00000546572.1_1_12:53702939-53703546:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS ENST00000546572.1_1_12:53702939-53703546:-|nuORF ENST00000546572.1_1_12:53702939-53703546:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26470947265625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 62.592 1 62.592 62.092 63.092 0 0 0 0 0.22576 1 12020 12020 14.838 2.3067 1 33282 1848 22328 22343 32819 32819 0.02332883409144415 PGHVRILL 8 Unmodified _PGHVRILL_ 0 0 0 REV__ENST00000575892.1_1_16:31176981-31177245:+|nuORF REV__ENST00000575892.1_1_16:31176981-31177245:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.0450134277344 3 302.19575 903.565421 NaN NaN NaN NaN NaN NaN NaN 25.47 1 23.616 23.116 24.116 -1.8534 0 0 0 0.21486 1 4186 4186 0.45834 0 1 + 33283 23205 22329 22344 32820 32820 0.10978091613583274 PGIGRILRRL 10 Unmodified _PGIGRILRRL_ 0 0 0 ENST00000536538.1_1_12:6602900-6604254:+|nuORF;ENST00000315579.9_1_12:6602900-6603308:+|nuORF ENST00000536538.1_1_12:6602900-6604254:+|nuORF ENST00000536538.1_1_12:6602900-6604254:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.328857421875 2 575.880199 1149.74584 0.26081 0.0001502 0.72986 0.00042031 0.99067 0.00057051 576.3818118903056 155.66 0.17639 150.37 150.22 150.4 -5.2854 6 4 2 0 0 0 1.1344 1 30168 30168 0 0 1 1280100 33284 8677 22330 22345 32821 32821 0.17696190270407897 PGIKPTIQIK 10 Unmodified _PGIKPTIQIK_ 0 0 0 ENST00000427574.6_1_11:76157982-76207767:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY ENST00000427574.6_1_11:76157982-76207767:+|nuORF ENST00000427574.6_1_11:76157982-76207767:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7839965820312 2 547.850242 1093.68593 0.33909 0.00018577 3.3019 0.001809 3.641 0.0019947 547.8512093856845 156.26 0.10368 151.48 151.39 151.49 -4.7885 4 2 2 0 0 0 0.67319 1 31062 31062 13.906 3.8321 1 829770 33285 5174 22331 22346 32822 32822 0.14283454816495578 PGIKTKLLVLL 11 Unmodified _PGIKTKLLVLL_ 0 0 0 ENST00000517951.5_1_5:156822576-156936463:-|nuORF ENST00000517951.5_1_5:156822576-156936463:-|nuORF ENST00000517951.5_1_5:156822576-156936463:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 597.907958984375 2 597.912842 1193.81113 NaN NaN NaN NaN NaN NaN NaN 164.64 1 159.6 159.1 160.1 -5.0446 0 0 0 0.22632 1 32125 32125 0.00056442 0 1 33286 10802 22332 22347 32823 32823 0.2219774695288379 PGILTAIQDLY 11 Unmodified _PGILTAIQDLY_ 0 0 0 REV__nc|ENSG851|Q9QC07|ERVK-18_pol REV__nc|ENSG851|Q9QC07|ERVK-18_pol MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2764282226562 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 88.178 1 84.385 83.885 84.885 -3.7926 0 0 0 0.23199 1 17244 17244 6.7232 0.51738 1 + 33287 24335 22333 22348 32824 32824 0.06146836991774762 PGIRPAPFGAP 11 Unmodified _PGIRPAPFGAP_ 0 0 0 REV__PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;REV__PTPN23|p.Y998Tfs*162|1|0.34|ENSG00000076201|chr3:47410785-47410785|C/-|frameshift_variant REV__PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.21270751953125 3 360.538064 1078.59236 -0.21981 -7.925E-05 0.19641 7.0813E-05 -0.023402 -8.4375E-06 360.538251363086 31.546 0.45702 31.546 31.284 31.741 0 26 12 3 0 0 0 0.54604 1 5707 5707 8.4443 0.28878 1 835750 + 33288 14345;24528 22334 22349 32825 32825 0.05621155434073444 PGISSPLPRGP 11 Unmodified _PGISSPLPRGP_ 0 0 0 ENST00000344692.7_1_8:144356972-144357419:+|nuORF ENST00000344692.7_1_8:144356972-144357419:+|nuORF ENST00000344692.7_1_8:144356972-144357419:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 539.6848754882812 2 539.306198 1076.59784 0.31344 0.00016904 2.697 0.0014545 3.0105 0.0016236 539.808193080787 154.14 0.17775 149.37 149.26 149.43 -4.7684 5 4 2 0 0 0 0.88709 1 30629 30629 18.146 5.1039 1 534810 33289 8894 22335 22350 32826 32826 0.06260834225895451 PGIYPPVA 8 Unmodified _PGIYPPVA_ 0 0 0 REV__RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant REV__RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 407.2359924316406 2 407.228897 812.44324 NaN NaN NaN NaN NaN NaN NaN 91.43 1 87.505 87.005 88.005 -3.9251 0 0 0 0.21486 1 17898 17898 11.114 0 1 + 33290 16678 22336 22351 32827 32827 0.029516298113207995 PGKEVKKGL 9 Unmodified _PGKEVKKGL_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000506936.1_1_4:56768485-56770658:+|nuORF nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7408447265625 2 478.300384 954.586216 0.18363 8.7831E-05 -0.18204 -8.7072E-05 0.0015876 7.5936E-07 478.30010141177536 162.12 0.64592 156.98 156.62 157.26 -5.1438 27 18 2 0 0 0 0.54933 1 31416 31416 17.113 0 1 3843600 33291 1798 22337 22352 32828 32828 0.10710637202555517 PGKFGERPPP 10 Unmodified _PGKFGERPPP_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2841796875 2 541.293091 1080.57163 0.17555 9.5025E-05 0.082585 4.4703E-05 0.25814 0.00013973 541.2931917791324 59.634 1.573 56.701 55.871 57.444 -2.9333 100 44 3 0 0 0 0.67319 1 11583 11583 13.906 2.2658 1 2144000 33292 10773 22338 22353 32829 32829 0.03456565054420935 PGKGDVCKYDY 11 Unmodified _PGKGDVCKYDY_ 0 0 0 REV__nc|ENSG00000138032|O75688-5|PPM1B REV__nc|ENSG00000138032|O75688-5|PPM1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7525634765625 2 622.784438 1243.55432 NaN NaN NaN NaN NaN NaN NaN 141.31 1 141.31 140.81 141.81 0 0 0 0 0.22862 1 28150 28150 9.3831 3.1773 1 + 33293 16429 22339 22354 32830 32830 -0.05771143333549844 PGKGGGSSSSS 11 Unmodified _PGKGGGSSSSS_ 0 0 0 nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1 nc|ENSG00000168539|P11229-2|CHRM1 nc|ENSG00000168539|P11229-2|CHRM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7562255859375 2 454.209421 906.404288 NaN NaN NaN NaN NaN NaN NaN 50.994 1 47.942 47.442 48.442 -3.0517 0 0 0 0.22632 1 9386 9386 0.0059557 0 1 33294 5920 22340 22355 32831 32831 -0.05265747280986943 PGKGRFLVRIC 11 Unmodified _PGKGRFLVRIC_ 0 0 0 ENSG00000247315|ENST00000500893|ZCCHC3 ENSG00000247315|ENST00000500893|ZCCHC3 ENSG00000247315|ENST00000500893|ZCCHC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.77294921875 2 623.366067 1244.71758 0.52742 0.00032878 1.9041 0.001187 2.4315 0.0015157 623.8677409923151 146.95 0.21686 141.95 141.82 142.04 -5 6 5 2 0 0 0 0.95337 1 28424 28424 5.7319 0.43497 1 1798300 33295 7887 22341 22356 32832 32832 0.10501124298821196 PGKLDLKPVNV 11 Unmodified _PGKLDLKPVNV_ 0 0 0 REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2630004882812 2 590.358431 1178.70231 NaN NaN NaN NaN NaN NaN NaN 123.27 1 118.54 118.04 119.04 -4.731 0 0 0 0.23379 1 23680 23680 5.2969 0 1 + 33296 12988 22342 22357 32833 32833 0.12010535982608417 PGKNAHSY 8 Unmodified _PGKNAHSY_ 0 0 0 ENST00000594883.1_1_19:57687347-57687830:+|nuORF ENST00000594883.1_1_19:57687347-57687830:+|nuORF ENST00000594883.1_1_19:57687347-57687830:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2149963378906 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 154.23 1 149.46 148.96 149.96 -4.7684 0 0 0 0.21486 1 30655 30655 5.2307 2.6532 1 33297 11655 22343 22358 32834 32834 -0.027245144849530334 PGKTHKALE 9 Unmodified _PGKTHKALE_ 0 0 0 REV__ADGRL2|p.K597Nfs*21|1|0.3|ENSG00000117114|chr1:81952991-81952991|A/-|frameshift_variant REV__ADGRL2|p.K597Nfs*21|1|0.3|ENSG00000117114|chr1:81952991-81952991|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 328.0148010253906 3 327.522303 979.545079 -0.40486 -0.0001326 -0.062718 -2.0542E-05 -0.46757 -0.00015314 327.52233999859857 34.529 0.76205 32.212 31.531 32.293 -2.3175 29 21 2 0 0 0 0.87888 1 6331 6331 1.0715 0 1 516710 + 33298 12966 22344 22359 32835 32835 0.05448876163075056 PGKTHKALE 9 Unmodified _PGKTHKALE_ 0 0 0 REV__ADGRL2|p.K597Nfs*21|1|0.3|ENSG00000117114|chr1:81952991-81952991|A/-|frameshift_variant REV__ADGRL2|p.K597Nfs*21|1|0.3|ENSG00000117114|chr1:81952991-81952991|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 327.522303 979.545079 -0.43312 -0.00014186 0.92938 0.00030439 0.49626 0.00016254 327.5225023367376 31.851 0.58891 31.851 31.458 32.047 0 -0.14216 0.00098054 NaN 1.0715 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 824260 + 33299 12966 22344 22359 0.05448876163075056 PGKTHKALE 9 Unmodified _PGKTHKALE_ 0 0 0 REV__ADGRL2|p.K597Nfs*21|1|0.3|ENSG00000117114|chr1:81952991-81952991|A/-|frameshift_variant REV__ADGRL2|p.K597Nfs*21|1|0.3|ENSG00000117114|chr1:81952991-81952991|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 327.522303 979.545079 0.20701 6.7799E-05 -0.57078 -0.00018694 -0.36377 -0.00011914 327.5221354377672 34.101 0.86265 31.954 31.427 32.29 -2.1468 -0.038453 -0.00049347 NaN 1.0715 38 24 2 NaN NaN NaN NaN 0 NaN NaN 0 578090 + 33300 12966 22344 22359 0.05448876163075056 PGKTHKALE 9 Unmodified _PGKTHKALE_ 0 0 0 REV__ADGRL2|p.K597Nfs*21|1|0.3|ENSG00000117114|chr1:81952991-81952991|A/-|frameshift_variant REV__ADGRL2|p.K597Nfs*21|1|0.3|ENSG00000117114|chr1:81952991-81952991|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 327.522303 979.545079 -0.30816 -0.00010093 0.036067 1.1813E-05 -0.27209 -8.9116E-05 327.5222599920521 34.17 1.0145 31.955 31.389 32.403 -2.2158 -0.038421 0.0001028 NaN 1.0715 34 28 2 NaN NaN NaN NaN 0 NaN NaN 0 443450 + 33301 12966 22344 22359 0.05448876163075056 PGLALAYG 8 Unmodified _PGLALAYG_ 0 0 0 ENST00000287652.8_1_3:10290056-10290500:+|nuORF ENST00000287652.8_1_3:10290056-10290500:+|nuORF ENST00000287652.8_1_3:10290056-10290500:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21185302734375 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 46.091 1 46.091 45.591 46.591 0 0 0 0 0.23294 1 8678 8678 0.12286 0 1 33302 8463 22345 22360 32836 32836 0.02215056777231439 PGLAPPLEL 9 Unmodified _PGLAPPLEL_ 0 0 0 REV__ENST00000553365.5_1_14:20835061-20835109:-|nuORF REV__ENST00000553365.5_1_14:20835061-20835109:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.767333984375 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 161.04 1 155.78 155.28 156.28 -5.2526 0 0 0 0.23508 1 31249 31249 9.3474 0 1 + 33303 22960 22346 22361 32837 32837 0.06567857045604342 PGLASRSRL 9 Unmodified _PGLASRSRL_ 0 0 0 REV__sp|P16767|UL36_HCMVAUncharacterizedproteinUL36OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL36PE=3SV=1 REV__sp|P16767|UL36_HCMVAUncharacterizedproteinUL36OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL36PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7220764160156 2 478.785433 955.556313 0.14565 6.9736E-05 0.014271 6.8328E-06 0.15992 7.6569E-05 478.78538107212194 153.48 0.51846 148.21 147.92 148.43 -5.2669 21 14 2 0 0 0 0.72255 1 29766 29766 5.2307 5.2307 1 1049100 + 33304 24680 22347 22362 32838 32838 0.07675698257230579 PGLDESKK 8 Unmodified _PGLDESKK_ 0 0 0 REV__ENST00000257572.5_1_12:117298772-117298961:-|nuORF REV__ENST00000257572.5_1_12:117298772-117298961:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2359619140625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 103.96 1 99.616 99.116 100.12 -4.346 0 0 0 0.2074 1 19917 19917 19.439 2.4967 1 + 33305 20140 22348 22363 32839 32839 0.019015056264720442 PGLESFQLWIA 11 Unmodified _PGLESFQLWIA_ 0 0 0 ENSG00000279270|ENST00000624978|OR52R1 ENSG00000279270|ENST00000624978|OR52R1 ENSG00000279270|ENST00000624978|OR52R1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.768310546875 2 630.834788 1259.65502 NaN NaN NaN NaN NaN NaN NaN 142.59 1 137.93 137.43 138.43 -4.656 0 0 0 0.22632 1 28185 28185 0.03141 0 1 33306 8048 22349 22364 32840 32840 0.03558256711630747 PGLLSIWTPP 10 Unmodified _PGLLSIWTPP_ 0 0 0 REV__ENST00000554534.5_2_14:60582735-60588007:+|nuORF REV__ENST00000554534.5_2_14:60582735-60588007:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.279541015625 2 540.808042 1079.60153 -0.015386 -8.3209E-06 2.777 0.0015018 2.7617 0.0014935 540.8081924251093 60.424 0.17302 60.424 60.314 60.487 0 6 4 2 0 0 0 0.70357 1 11584 11584 10.824 0 1 810130 + 33307 22974 22350 22365 32841 32841 0.06491503999745873 PGLRIKKV 8 Unmodified _PGLRIKKV_ 0 0 0 ENST00000479978.5_1_22:41614103-41614259:+|nuORF ENST00000479978.5_1_22:41614103-41614259:+|nuORF ENST00000479978.5_1_22:41614103-41614259:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.2117614746094 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 107.36 1 102.95 102.45 103.45 -4.4121 0 0 0 0.21486 1 20598 20598 1.8442 0 1 33308 10350 22351 22366 32842 32842 0.15394951164705617 PGLRYVRT 8 Unmodified _PGLRYVRT_ 0 0 0 REV__ENST00000460788.5_1_2:241655965-241656310:-|nuORF REV__ENST00000460788.5_1_2:241655965-241656310:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7830505371094 2 481.282526 960.550499 -0.16922 -8.1442E-05 -1.1478 -0.00055241 -1.317 -0.00063385 481.28187481887477 82.966 0.55395 79.267 78.933 79.487 -3.6985 30 15 3 0 0 0 8448 1 15787 15787 0.68139 0.6174 1 2588800 + 33309 21883 22352 22367 32843 32843 0.06864599745563282 PGLSLVRVGP 10 Unmodified _PGLSLVRVGP_ 0 0 0 REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.0052490234375 3 332.206315 993.597115 0.29148 9.683E-05 -0.3374 -0.00011209 -0.045927 -1.5257E-05 332.20617731984134 31.537 0.32172 29.51 29.336 29.658 -2.0264 12 8 2 0 0 0 0.91149 1 5413 5413 0 0 1 456700 + 33310 19919 22353 22368 32844 32844 0.10006039576853709 PGLSLVRVGP 10 Unmodified _PGLSLVRVGP_ 0 0 0 REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 332.206315 993.597115 -0.0034357 -1.1414E-06 -0.015489 -5.1454E-06 -0.018924 -6.2867E-06 332.2062550014371 31.696 0.45651 29.465 29.234 29.691 -2.2305 -0.022638 0.00016092 NaN 0 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 562890 + 33311 19919 22353 22368 0.10006039576853709 PGLSSREVAQ 10 Unmodified _PGLSSREVAQ_ 0 0 0 REV__nc|ENSG00000151623|P08235-2|NR3C2 REV__nc|ENSG00000151623|P08235-2|NR3C2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2774658203125 2 522.277638 1042.54072 0.43878 0.00022917 -0.52904 -0.0002763 -0.090258 -4.714E-05 522.2775426432585 49.501 0.45409 49.501 49.232 49.686 0 18 12 2 0 0 0 0.65996 1 9339 9339 15.248 2.206 1 1006300 + 33312 17075 22354 22369 32845 32845 0.021153669495106442 PGLSSREVAQ 10 Unmodified _PGLSSREVAQ_ 0 0 0 REV__nc|ENSG00000151623|P08235-2|NR3C2 REV__nc|ENSG00000151623|P08235-2|NR3C2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2777099609375 2 522.277638 1042.54072 -0.66414 -0.00034686 0.77727 0.00040595 0.11313 5.9087E-05 522.278013427265 52.526 0.49488 49.439 49.266 49.761 -3.0876 15 13 2 0 0 0 0.70381 1 9695 9695 10.8 0.61611 1 1564200 + 33313 17075 22354 22369 32846 32846 0.021153669495106442 PGLWSERKP 9 Unmodified _PGLWSERKP_ 0 0 0 REV__ENST00000493504.1_1_19:59086892-59092632:+|nuORF REV__ENST00000493504.1_1_19:59086892-59092632:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.56024169921875 3 357.197819 1068.57163 0.20314 7.2563E-05 0.39123 0.00013975 0.59438 0.00021231 357.1978760432823 21.472 0.21289 19.998 19.876 20.089 -1.4742 7 5 2 0 0 0 0.74567 1 3635 3635 4.1895 0.60244 1 242520 + 33314 22348 22355 22370 32847 32847 0.04008565054414248 PGLWSERKP 9 Unmodified _PGLWSERKP_ 0 0 0 REV__ENST00000493504.1_1_19:59086892-59092632:+|nuORF REV__ENST00000493504.1_1_19:59086892-59092632:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.197819 1068.57163 -1.37 -0.00048937 1.1679 0.00041716 -0.20216 -7.2211E-05 357.53259661343037 21.682 0.23779 19.961 19.815 20.053 -1.7211 -0.0030134 0.00039693 NaN 4.1895 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 240430 + 33315 22348 22355 22370 0.04008565054414248 PGNHLGAR 8 Unmodified _PGNHLGAR_ 0 0 0 nc|ENSG00000142233|Q8WTR8-2|NTN5;ENST00000600468.1_1_19:49166991-49176216:-|nuORF;ENSG00000142233|ENST00000270235|NTN5 nc|ENSG00000142233|Q8WTR8-2|NTN5 nc|ENSG00000142233|Q8WTR8-2|NTN5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1142883300781 2 411.222469 820.430384 NaN NaN NaN NaN NaN NaN NaN 46.135 1 43.295 42.795 43.795 -2.8409 0 0 0 0.21486 1 8704 8704 5.2307 0 1 33316 4413 22356 22371 32848 32848 0.012986114718046338 PGNLRPNRHLA 11 Unmodified _PGNLRPNRHLA_ 0 0 0 nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6;TRIM22|p.K103Nfs*31|2|0.31|ENSG00000132274|chr11:5696535-5696535|A/-|frameshift_variant;ENST00000460454.1_1_11:5717462-5717939:+|nuORF;TRIM22|p.S376Tfs*3|1|0.09|ENSG00000132274|chr11:5709277-5709278|-/CATG|frameshift_variant;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENSG00000132274|ENST00000379965|TRIM22 nc|ENSG00000121236|Q9C030|TRIM6 nc|ENSG00000121236|Q9C030|TRIM6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7730712890625 2 622.85217 1243.68979 NaN NaN NaN NaN NaN NaN NaN 149.67 1 144.94 144.44 145.44 -4.7323 0 0 0 0.22501 1 29721 29721 12.241 1.4411 1 33317 3172 22357 22372 32849 32849 0.07768937362948236 PGNSARDVL 9 Unmodified _PGNSARDVL_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37;GPR37|p.A78Qfs*93|1|0.6|ENSG00000170775|chr7:124764745-124764745|C/-|frameshift_variant ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 77.457 1 73.798 73.298 74.298 -3.6588 0 0 0 0.19632 1 14749 14749 0.073264 0 1 33318 6095 22358 22373 32850 32850 0.010754262322848263 PGPAAGRATL 10 Unmodified _PGPAAGRATL_ 0 0 0 ENST00000608517.1_1_1:178694567-178695308:-|nuORF ENST00000608517.1_1_1:178694567-178695308:-|nuORF ENST00000608517.1_1_1:178694567-178695308:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.24847412109375 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 107.11 1 102.79 102.29 103.29 -4.32 0 0 0 0.22588 1 21090 21090 3.5871 1.0886 1 33319 11766 22359 22374 32851 32851 0.04484320474546166 PGPAGPSH 8 Unmodified _PGPAGPSH_ 0 0 0 REV__ENST00000569326.2_1_8:145724500-145725055:-|nuORF REV__ENST00000569326.2_1_8:145724500-145725055:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2052001953125 2 360.177195 718.339838 NaN NaN NaN NaN NaN NaN NaN 50.244 1 47.363 46.863 47.863 -2.8811 0 0 0 0.21323 1 9530 9530 14.582 0 1 + 33320 23153 22360 22375 32852 32852 -0.030598575764884117 PGPAGRSHK 9 Unmodified _PGPAGRSHK_ 0 0 0 REV__ENST00000588000.5_1_19:46124203-46142634:-|nuORF REV__ENST00000588000.5_1_19:46124203-46142634:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7508850097656 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 156.91 1 156.91 156.41 157.41 0 0 0 0 0.23508 1 31485 31485 9.3474 0.75416 1 + 33321 23282 22361 22376 32853 32853 0.026625695346069733 PGPARATRAA 10 Unmodified _PGPARATRAA_ 0 0 0 REV__ENST00000304658.9_1_16:28223132-28223186:-|nuORF REV__ENST00000304658.9_1_16:28223132-28223186:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1684875488281 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 80.415 1 76.576 76.076 77.076 -3.8392 0 0 0 0.22588 1 15262 15262 0.77653 0.31819 1 + 33322 20425 22362 22377 32854 32854 0.05130527597418677 PGPARHAHS 9 Unmodified _PGPARHAHS_ 0 0 0 ENSG00000064687|ENST00000263094|ABCA7;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant ENSG00000064687|ENST00000263094|ABCA7 ENSG00000064687|ENST00000263094|ABCA7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2399597167969 2 465.23865 928.462747 0.15704 7.3062E-05 0.088038 4.0959E-05 0.24508 0.00011402 465.23870516204494 30.659 0.62302 30.659 30.417 31.04 0 21 17 2 0 0 0 0.5059 1 5488 5488 19.257 3.4098 1 947480 33323 1341 22363 22378 32855 32855 -0.004346011251982418 PGPASTLLLFY 11 Unmodified _PGPASTLLLFY_ 0 0 0 ENST00000375225.7_1_1:19407882-19408122:-|nuORF ENST00000375225.7_1_1:19407882-19408122:-|nuORF ENST00000375225.7_1_1:19407882-19408122:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2683715820312 2 589.826432 1177.63831 0.54806 0.00032326 -3.6402 -0.0021471 -3.0921 -0.0018238 590.3261117148929 150.83 0.10483 145.6 145.52 145.63 -5.2279 4 2 2 0 0 0 0.66829 1 29222 29222 13.906 3.0821 1 1585800 33324 9235 22364 22379 32856 32856 0.05659755825672619 PGPCCCCCCGC 11 Unmodified _PGPCCCCCCGC_ 0 0 0 REV__ENST00000371142.8_1_10:98336555-98346579:-|nuORF REV__ENST00000371142.8_1_10:98336555-98346579:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.0732421875 3 350.081714 1047.22331 NaN NaN NaN NaN NaN NaN NaN 7.651 1 6.6362 6.1362 7.1362 -1.0148 0 0 0 0.23698 1 641 641 0 0 1 + 33325 20998 22365 22380 32857 32857 -0.2984115410438335 PGPGAAPY 8 Unmodified _PGPGAAPY_ 0 0 0 REV__nc|ENSG00000158458|O14511-7|NRG2 REV__nc|ENSG00000158458|O14511-7|NRG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.51348876953125 2 365.181946 728.34934 -0.28919 -0.00010561 0.41773 0.00015255 0.12854 4.6939E-05 365.1820078128534 44.47 0.91145 41.68 41.291 42.202 -2.79 56 25 3 0 0 0 0.87947 1 8336 8336 3.5871 0 1 5465600 + 33326 17334 22366 22381 32858 32858 -0.025700892909526374 PGPGAAPY 8 Unmodified _PGPGAAPY_ 0 0 0 REV__nc|ENSG00000158458|O14511-7|NRG2 REV__nc|ENSG00000158458|O14511-7|NRG2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 365.181946 728.34934 -0.014639 -5.3458E-06 0.17664 6.4504E-05 0.162 5.9159E-05 365.18192609561675 41.669 0.87798 41.669 41.305 42.183 0 0.015092 -0.00017999 NaN 3.5871 54 24 3 NaN NaN NaN NaN 0 NaN NaN 0 6847100 + 33327 17334 22366 22381 -0.025700892909526374 PGPGAAPY 8 Unmodified _PGPGAAPY_ 0 0 0 REV__nc|ENSG00000158458|O14511-7|NRG2 REV__nc|ENSG00000158458|O14511-7|NRG2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 365.181946 728.34934 -0.030174 -1.1019E-05 0.19483 7.1149E-05 0.16466 6.013E-05 365.1819091700599 44.39 0.82646 41.624 41.185 42.012 -2.7661 -0.029452 -0.0001667 NaN 3.5871 55 23 3 NaN NaN NaN NaN 0 NaN NaN 0 5619100 + 33328 17334 22366 22381 -0.025700892909526374 PGPGAAPY 8 Unmodified _PGPGAAPY_ 0 0 0 REV__nc|ENSG00000158458|O14511-7|NRG2 REV__nc|ENSG00000158458|O14511-7|NRG2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 365.181946 728.34934 -0.7694 -0.00028097 0.90102 0.00032903 0.13161 4.8063E-05 365.1821967963281 44.389 0.91485 41.642 41.219 42.134 -2.7475 -0.011753 0.00034907 NaN 3.5871 59 25 3 NaN NaN NaN NaN 0 NaN NaN 0 5452600 + 33329 17334 22366 22381 -0.025700892909526374 PGPGPEGHT 9 Unmodified _PGPGPEGHT_ 0 0 0 REV__nc|ENSG00000170374|Q8TDD2-2|SP7 REV__nc|ENSG00000170374|Q8TDD2-2|SP7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2478942871094 2 424.698492 847.382431 0.13911 5.9078E-05 0.09751 4.1412E-05 0.23662 0.00010049 424.69851430386234 29.004 0.42096 29.004 28.738 29.159 0 17 11 2 0 0 0 0.80737 1 5165 5165 9.3474 9.3474 1 1008500 + 33330 18156 22367 22382 32859 32859 -0.04736507238885679 PGPGQPSHP 9 Unmodified _PGPGQPSHP_ 0 0 0 REV__ENST00000478597.5_1_9:140007734-140009165:-|nuORF REV__ENST00000478597.5_1_9:140007734-140009165:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2152404785156 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 171.47 1 166.68 166.18 167.18 -4.7898 0 0 0 0.23508 1 34866 34866 7.9102 0 1 + 33331 22145 22368 22383 32860 32860 -0.027245144849530334 PGPGQPSHP 9 Unmodified _PGPGQPSHP_ 0 0 0 REV__ENST00000478597.5_1_9:140007734-140009165:-|nuORF REV__ENST00000478597.5_1_9:140007734-140009165:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21533203125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 130.15 1 125.32 124.82 125.82 -4.8355 0 0 0 0.23508 1 24988 24988 4.3292 0 1 + 33332 22145 22368 22383 32861 32861 -0.027245144849530334 PGPHAGASEP 10 Unmodified _PGPHAGASEP_ 0 0 0 REV__OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant REV__OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2480773925781 2 460.217049 918.419545 NaN NaN NaN NaN NaN NaN NaN 55.432 1 55.432 54.932 55.932 0 0 0 0 0.22588 1 10584 10584 11.64 2.2572 1 + 33333 18623 22369 22384 32862 32862 -0.04292835693138386 PGPKPDERKK 10 Unmodified _PGPKPDERKK_ 0 0 0 REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3322143554688 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 32.633 1 30.486 29.986 30.986 -2.1468 0 0 0 2.8426 1 5666 5666 0.043787 0.017581 1 + 33334 15522 22370 22385 32863 32863 0.07655908145943613 PGPLAGEAH 9 Unmodified _PGPLAGEAH_ 0 0 0 REV__ENST00000535977.5_1_16:678807-679005:+|nuORF REV__ENST00000535977.5_1_16:678807-679005:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2372131347656 2 424.716685 847.418816 0.18978 8.0601E-05 -0.24754 -0.00010513 -0.057761 -2.4532E-05 424.71662899993 33.53 0.55733 31.383 31.113 31.67 -2.1468 24 15 2 0 0 0 0.50294 1 5880 5880 19.439 0 1 813250 + 33335 22815 22371 22386 32864 32864 -0.010996303421961784 PGPLAGEAH 9 Unmodified _PGPLAGEAH_ 0 0 0 REV__ENST00000535977.5_1_16:678807-679005:+|nuORF REV__ENST00000535977.5_1_16:678807-679005:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 424.716685 847.418816 -0.18535 -7.872E-05 0.064751 2.7501E-05 -0.1206 -5.122E-05 424.71679139502294 33.692 0.48433 31.375 31.079 31.563 -2.3175 0.02342 0.00017032 NaN 19.439 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 814110 + 33336 22815 22371 22386 -0.010996303421961784 PGPLAGEAH 9 Unmodified _PGPLAGEAH_ 0 0 0 REV__ENST00000535977.5_1_16:678807-679005:+|nuORF REV__ENST00000535977.5_1_16:678807-679005:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 424.716685 847.418816 0.18978 8.0601E-05 -0.24754 -0.00010513 -0.057761 -2.4532E-05 424.71662899993 33.53 0.55733 31.383 31.113 31.67 -2.1468 0.031829 -9.495E-05 NaN 19.439 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 813250 + 33337 22815 22371 22386 -0.010996303421961784 PGPPPPPPP 9 Unmodified _PGPPPPPPP_ 0 0 0 ENST00000375142.5_2_1:19811931-19811970:-|nuORF;ENSG00000099822|ENST00000251287|HCN2;MYRF|p.S264Qfs*74|1|0.42|ENSG00000124920|chr11:61771540-61771541|-/C|frameshift_variant;FOXK1|p.Y219Pfs*84|1|0.31|ENSG00000164916|chr7:4740930-4740931|TG/-|frameshift_variant;MYRF|p.S264Afs*8|1|0.32|ENSG00000124920|chr11:61771541-61771541|C/-|frameshift_variant;ENSG00000182742|ENST00000332503|HOXB4;ENST00000584336.1_1_17:37686825-37687566:+|nuORF;nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000164916|ENST00000328914|FOXK1;ENSG00000136928|ENST00000259455|GABBR2;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF;MYRF|p.K745Rfs*45|1|0.07|ENSG00000124920|chr11:61779550-61779550|C/-|frameshift_variant;MYRF|p.S823Vfs*22|1|0.07|ENSG00000124920|chr11:61780767-61780767|G/-|frameshift_variant;ENSG00000125966|ENST00000246186|MMP24 REV__ENSG00000157152|ENST00000621198|SYN2;REV__ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000134775|Q2V2M9-2|FHOD3;REV__ENSG00000122728|ENST00000242310|TAF1L;REV__nc|ENSG00000147133|P21675-23|TAF1;nc|ENSG00000167258|Q9NYV4-2|CDK12;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;ENSG00000164916|ENST00000328914|FOXK1;ENSG00000136928|ENST00000259455|GABBR2;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000125966|ENST00000246186|MMP24;REV__HTT|p.P1176Lfs*3|1|0.18|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant REV__ENSG00000122728|ENST00000242310|TAF1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.1576232910156 2 426.734346 851.454139 -0.29992 -0.00012798 -1.5291 -0.0006525 -1.829 -0.00078049 426.73385017067756 50.966 0.46167 48.083 47.749 48.21 -2.8824 17 12 2 0 0 0 0.74227 1 9624 9624 20.871 0 1 470140 33338 15703;16921;17285;5797;13860;4052;3338;17328;3874;5574;3407;19333 22372 22387 32865 32865 0.022470321856076225 PGPPSRSR 8 Unmodified _PGPPSRSR_ 0 0 0 ENST00000467438.1_1_1:87597663-87598596:+|nuORF ENST00000467438.1_1_1:87597663-87598596:+|nuORF ENST00000467438.1_1_1:87597663-87598596:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.3259582519531 2 427.235576 852.456599 NaN NaN NaN NaN NaN NaN NaN 49.355 1 46.356 45.856 46.856 -2.999 0 0 0 0.21452 1 9023 9023 13.508 2.3934 1 33339 10148 22373 22388 32866 32866 0.02446880643287841 PGPSSPPPPP 10 Unmodified _PGPSSPPPPP_ 0 0 0 ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B;KDM6B|p.P544Sfs*11|1|0.14|ENSG00000132510|chr17:7847912-7847913|-/C|frameshift_variant;KDM6B|p.R513Afs*69|1|0.84|ENSG00000132510|chr17:7847819-7847819|C/-|frameshift_variant;KDM6B|p.T676Hfs*8|1|0.18|ENSG00000132510|chr17:7848307-7848308|-/C|frameshift_variant;KDM6B|p.T743Pfs*39|1|0.55|ENSG00000132510|chr17:7848510-7848510|C/-|frameshift_variant;KDM6B|p.P842Hfs*52|1|0.38|ENSG00000132510|chr17:7848808-7848808|C/-|frameshift_variant;KDM6B|p.K1101Rfs*3|1|0.23|ENSG00000132510|chr17:7849583-7849583|C/-|frameshift_variant ENSG00000132510|ENST00000448097|KDM6B ENSG00000132510|ENST00000448097|KDM6B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.240966796875 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 41.872 1 39.238 38.738 39.738 -2.6348 0 0 0 0.22544 1 7824 7824 19.257 0 1 33340 3736 22374 22389 32867 32867 -0.0016619051090174253 PGPTCCCG 8 Unmodified _PGPTCCCG_ 0 0 0 REV__BAHCC1|p.R1605Afs*107|1|0.22|ENSG00000266074|chr17:81456436-81456436|C/-|frameshift_variant REV__BAHCC1|p.R1605Afs*107|1|0.22|ENSG00000266074|chr17:81456436-81456436|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 368.874267578125 2 369.124402 736.234252 NaN NaN NaN NaN NaN NaN NaN 78.267 1 74.5 74 75 -3.7664 0 0 0 0.2396 1 14841 14841 0.30703 0.29875 1 + 33341 13176 22375 22390 32868 32868 -0.14441601080261535 PGPTDLSDGP 10 Unmodified _PGPTDLSDGP_ 0 0 0 REV__HIF3A|p.R387Q|1|0.41|ENSG00000124440|chr19:46321791-46321791|G/A|missense_variant REV__HIF3A|p.R387Q|1|0.41|ENSG00000124440|chr19:46321791-46321791|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7239990234375 2 478.221997 954.429441 -0.017605 -8.4191E-06 0.22283 0.00010656 0.20523 9.8144E-05 478.2221070970427 46.112 0.62324 43.272 42.898 43.521 -2.8409 29 17 2 0 0 0 0.65405 1 8651 8651 15.847 0 1 1173700 + 33342 15777 22376 22391 32869 32869 -0.04959692478416855 PGPVDLGP 8 Unmodified _PGPVDLGP_ 0 0 0 REV__ENST00000483338.1_1_X:107826116-107869594:+|nuORF REV__ENST00000483338.1_1_X:107826116-107869594:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.0948486328125 2 376.202879 750.391205 NaN NaN NaN NaN NaN NaN NaN 15.569 1 14.347 13.847 14.847 -1.2219 0 0 0 0.21486 1 2189 2189 2.8892 0 1 + 33343 13489 22377 22392 32870 32870 0.006024663975722433 PGPVDSSNV 9 Unmodified _PGPVDSSNV_ 0 0 0 REV__nc|ENSG00000182871|P39060|COL18A1 REV__nc|ENSG00000182871|P39060|COL18A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22113037109375 2 436.211432 870.408311 0.30294 0.00013215 -0.096483 -4.2087E-05 0.20646 9.006E-05 436.21139765912926 30.643 1.0226 28.526 28.011 29.033 -2.1167 62 28 3 0 0 0 0.60489 1 5564 5564 2.4985 2.4971 1 1320500 + 33344 24201 22378 22393 32871 32871 -0.03207657787277185 PGPVGRRRVPL 11 Unmodified _PGPVGRRRVPL_ 0 0 0 REV__ENST00000331593.5_1_1:39957322-39957700:+|nuORF REV__ENST00000331593.5_1_1:39957322-39957700:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2809448242188 2 602.375281 1202.73601 NaN NaN NaN NaN NaN NaN NaN 82.832 1 78.959 78.459 79.459 -3.8736 0 0 0 0.23594 1 15732 15732 3.5965 0 1 + 33345 20617 22379 22394 32872 32872 0.14275002265048897 PGPVLYMP 8 Unmodified _PGPVLYMP_ 0 0 0 UNK|p.P486Lfs*12|3|0.28|ENSG00000132478|chr17:75818721-75818721|C/-|frameshift_variant;ENSG00000132478|ENST00000589666|UNK UNK|p.P486Lfs*12|3|0.28|ENSG00000132478|chr17:75818721-75818721|C/-|frameshift_variant UNK|p.P486Lfs*12|3|0.28|ENSG00000132478|chr17:75818721-75818721|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23004150390625 2 437.230582 872.446611 NaN NaN NaN NaN NaN NaN NaN 41.002 1 38.367 37.867 38.867 -2.6348 0 0 0 0.21486 1 7649 7649 11.114 0 1 33346 3733 22380 22395 32873 32873 0.005285565936901548 PGPWLRQC 8 Unmodified _PGPWLRQC_ 0 0 0 REV__ENST00000515265.2_1_5:140022188-140024328:+|nuORF REV__ENST00000515265.2_1_5:140022188-140024328:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7427978515625 2 478.742179 955.469806 NaN NaN NaN NaN NaN NaN NaN 14.112 1 12.998 12.498 13.498 -1.1142 0 0 0 0.21486 1 2094 2094 2.8892 0 1 + 33347 15327 22381 22396 32874 32874 -0.00971004568987155 PGQDCWAP 8 Unmodified _PGQDCWAP_ 0 0 0 REV__ENST00000300954.9_1_19:1483001-1487678:-|nuORF REV__ENST00000300954.9_1_19:1483001-1487678:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2176208496094 2 437.18162 872.348688 NaN NaN NaN NaN NaN NaN NaN 50.706 1 47.654 47.154 48.154 -3.0517 0 0 0 0.21486 1 9324 9324 2.8892 0.31174 1 + 33348 20404 22382 22397 32875 32875 -0.09259252002323137 PGQEKQTAA 9 Unmodified _PGQEKQTAA_ 0 0 0 REV__ENST00000465608.1_1_10:99344097-99344382:+|nuORF REV__ENST00000465608.1_1_10:99344097-99344382:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23870849609375 2 465.237981 928.461409 0.20646 9.6054E-05 0.50256 0.00023381 0.70902 0.00032986 465.2382304596207 32.777 0.62903 30.63 30.343 30.972 -2.1468 28 17 2 0 0 0 0.58804 1 5662 5662 13.906 0 1 911200 + 33349 21952 22383 22398 32876 32876 -0.005682800046201919 PGQPERSVK 9 Unmodified _PGQPERSVK_ 0 0 0 REV__ENST00000557614.1_1_14:100803287-100808848:-|nuORF REV__ENST00000557614.1_1_14:100803287-100808848:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.21771240234375 3 333.185691 996.535243 NaN NaN NaN NaN NaN NaN NaN 92.341 1 88.416 87.916 88.916 -3.9251 0 0 0 0.23508 1 18084 18084 2.4985 0 1 + 33350 23013 22384 22399 32877 32877 0.036836881577073655 PGQPERSVK 9 Unmodified _PGQPERSVK_ 0 0 0 REV__ENST00000557614.1_1_14:100803287-100808848:-|nuORF REV__ENST00000557614.1_1_14:100803287-100808848:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.1850280761719 3 333.185691 996.535243 NaN NaN NaN NaN NaN NaN NaN 92.368 1 88.443 87.943 88.943 -3.9251 0 0 0 0.23508 1 18090 18090 2.4985 0 1 + 33351 23013 22384 22399 32878 32878 0.036836881577073655 PGQQIWCKLAT 11 Unmodified _PGQQIWCKLAT_ 0 0 0 REV__chr6:8438031-8652287|106|22.28|0.0|21.09|+|1|HULC,HULC|1 REV__chr6:8438031-8652287|106|22.28|0.0|21.09|+|1|HULC,HULC|1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7657470703125 2 622.82644 1243.63833 NaN NaN NaN NaN NaN NaN NaN 20.195 1 18.799 18.299 19.299 -1.3966 0 0 0 0.23324 1 3364 3364 5.7319 1.203 1 + 33352 13426 22385 22400 32879 32879 0.026254325540094214 PGRAAAPLGP 10 Unmodified _PGRAAAPLGP_ 0 0 0 REV__ENST00000293780.4_1_17:4802527-4804189:-|nuORF REV__ENST00000293780.4_1_17:4802527-4804189:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7593688964844 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 87.754 1 83.758 83.258 84.258 -3.9953 0 0 0 2.8426 1 16711 16711 0.20733 0 1 + 33353 20362 22386 22401 32880 32880 0.05176624337184421 PGRAAAPLGP 10 Unmodified _PGRAAAPLGP_ 0 0 0 REV__ENST00000293780.4_1_17:4802527-4804189:-|nuORF REV__ENST00000293780.4_1_17:4802527-4804189:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7597351074219 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 87.687 1 83.937 83.437 84.437 -3.7501 0 0 0 2.8426 1 16778 16778 0.20733 0 1 + 33354 20362 22386 22401 32881 32881 0.05176624337184421 PGREGFVGP 9 Unmodified _PGREGFVGP_ 0 0 0 REV__ENSG00000196739|ENST00000356083|COL27A1 REV__ENSG00000196739|ENST00000356083|COL27A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23846435546875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 53.913 1 53.913 53.413 54.413 0 0 0 0 0.23508 1 10275 10275 7.9102 0 1 + 33355 19277 22387 22402 32882 32882 0.0003634506618936939 PGREGFVGP 9 Unmodified _PGREGFVGP_ 0 0 0 REV__ENSG00000196739|ENST00000356083|COL27A1 REV__ENSG00000196739|ENST00000356083|COL27A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2385559082031 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 58.778 1 55.573 55.073 56.073 -3.2052 0 0 0 0.21848 1 10975 10975 18.135 1.1927 1 + 33356 19277 22387 22402 32883 32883 0.0003634506618936939 PGRGEWGLHS 10 Unmodified _PGRGEWGLHS_ 0 0 0 ENST00000396684.2_1_12:7043082-7043184:+|nuORF ENST00000396684.2_1_12:7043082-7043184:+|nuORF ENST00000396684.2_1_12:7043082-7043184:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7872924804688 2 548.270147 1094.52574 0.077216 4.2335E-05 0.81559 0.00044716 0.8928 0.0004895 548.2701057101002 52.865 0.17278 49.778 49.726 49.899 -3.0876 8 4 2 0 0 0 0.79872 1 9735 9735 19.257 9.1831 1 549740 33357 9450 22388 22403 32884 32884 -0.01774080127825073 PGRLKLLKIL 10 Unmodified _PGRLKLLKIL_ 0 0 0 ENST00000557374.1_1_14:52957560-53019203:-|nuORF ENST00000557374.1_1_14:52957560-53019203:-|nuORF ENST00000557374.1_1_14:52957560-53019203:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3111572265625 2 575.905351 1149.79615 0.24464 0.00014089 0.43821 0.00025237 0.68285 0.00039326 575.9041383942198 153.42 0.14075 148.16 148.06 148.2 -5.2669 5 3 2 0 0 0 0.91149 1 29731 29731 0 0 1 1188800 33358 11254 22389 22404 32885 32885 0.22724299875540055 PGRNLVLY 8 Unmodified _PGRNLVLY_ 0 0 0 KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549;KIAA1549|p.L283*|1|0.24|ENSG00000122778|chr7:138918778-138918778|A/-|frameshift_variant;KIAA1549|p.N577Kfs*17|1|0.09|ENSG00000122778|chr7:138917895-138917896|-/T|frameshift_variant;KIAA1549|p.G773Afs*8|1|0.2|ENSG00000122778|chr7:138917310-138917310|G/-|frameshift_variant;KIAA1549|p.P943Afs*6|1|0.07|ENSG00000122778|chr7:138916800-138916801|-/T|frameshift_variant;KIAA1549|p.E1477Gfs*3|1|0.36|ENSG00000122778|chr7:138871280-138871281|-/G|frameshift_variant KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.185546875 3 311.18351 930.528701 NaN NaN NaN NaN NaN NaN NaN 101.84 1 97.519 97.019 98.019 -4.3208 0 0 0 0.21486 1 19491 19491 1.6526 0 1 33359 3241 22390 22405 32886 32886 0.06065794996993645 PGRQLLLDIDF 11 Unmodified _PGRQLLLDIDF_ 0 0 0 REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1 REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 643.860107421875 2 643.858795 1285.70304 NaN NaN NaN NaN NaN NaN NaN 13.852 1 12.738 12.238 13.238 -1.1142 0 0 0 0.23634 1 2036 2036 3.2813 0 1 + 33360 24701 22391 22406 32887 32887 0.07161330631652163 PGRQRPGDP 9 Unmodified _PGRQRPGDP_ 0 0 0 ENST00000339486.7_1_18:21033428-21042976:+|nuORF ENST00000339486.7_1_18:21033428-21042976:+|nuORF ENST00000339486.7_1_18:21033428-21042976:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2555847167969 2 490.25704 978.499526 NaN NaN NaN NaN NaN NaN NaN 19.774 1 18.378 17.878 18.878 -1.3966 0 0 0 0.23508 1 3274 3274 11.64 0.14559 1 33361 8839 22392 22407 32888 32888 0.009416507007017572 PGRRLRRRH 9 Unmodified _PGRRLRRRH_ 0 0 0 CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant;ENSG00000160161|ENST00000291495|CILP2 CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2721557617188 2 602.373938 1202.73332 NaN NaN NaN NaN NaN NaN NaN 82.87 1 78.997 78.497 79.497 -3.8736 0 0 0 0.23508 1 15739 15739 2.3027 0 1 33362 561 22393 22408 32889 32889 0.14006591650718292 PGRRPSRLR 9 Unmodified _PGRRPSRLR_ 0 0 0 REV__ENST00000477886.5_1_7:102004828-102038101:+|nuORF REV__ENST00000477886.5_1_7:102004828-102038101:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7850341796875 2 547.836323 1093.65809 NaN NaN NaN NaN NaN NaN NaN 162.61 1 157.42 156.92 157.92 -5.1878 0 0 0 0.1964 1 31583 31583 1.2148 0 1 + 33363 22126 22394 22409 32890 32890 0.11500989399632999 PGRRRRRTAF 10 Unmodified _PGRRRRRTAF_ 0 0 0 ENSG00000156466|ENST00000287020|GDF6 ENSG00000156466|ENST00000287020|GDF6 ENSG00000156466|ENST00000287020|GDF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2372131347656 3 424.921794 1271.74355 0.18285 7.7698E-05 1.2499 0.0005311 1.4327 0.00060879 424.9223970136798 33.731 0.21055 31.584 31.496 31.707 -2.1468 10 5 3 0 0 0 0.91149 1 5880 5880 3.5871 3.0811 1 431210 33364 5090 22395 22410 32891 32891 0.11855154585305172 PGRRSPWLAY 10 Unmodified _PGRRSPWLAY_ 0 0 0 ENSG00000170893|ENST00000302649|TRH ENSG00000170893|ENST00000302649|TRH ENSG00000170893|ENST00000302649|TRH MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2808837890625 2 601.825089 1201.63563 NaN NaN NaN NaN NaN NaN NaN 84.247 1 80.535 80.035 81.035 -3.7117 0 0 0 0.22588 1 16088 16088 7.9102 0 1 33365 6110 22396 22411 32892 32892 0.04287345211378124 PGRVLLLR 8 Unmodified _PGRVLLLR_ 0 0 0 REV__ENSG00000070476|ENST00000389709|ZXDC REV__ENSG00000070476|ENST00000389709|ZXDC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.1572570800781 3 308.54315 922.60762 -0.43926 -0.00013553 0.24678 7.6142E-05 -0.19248 -5.9388E-05 308.54319206404045 97.369 0.55316 97.369 97.155 97.709 0 20 15 2 0 0 0 1.0267 1 19117 19117 0.35063 0 1 1227000 + 33366 14257 22397 22412 32893 32893 0.14322067021942075 PGRWQTLF 8 Unmodified _PGRWQTLF_ 0 0 0 ENST00000350796.7_1_7:6203005-6203218:-|nuORF ENST00000350796.7_1_7:6203005-6203218:-|nuORF ENST00000350796.7_1_7:6203005-6203218:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.0596618652344 3 335.51526 1003.52395 -0.62077 -0.00020828 -0.19849 -6.6597E-05 -0.81926 -0.00027487 335.51517755171756 26.682 0.51765 24.76 24.503 25.02 -1.9222 23 14 2 0 0 0 1.0276 1 4380 4380 0.45834 0 1 1587900 33367 8924 22398 22413 32894 32894 0.02232910854218062 PGRWQTLF 8 Unmodified _PGRWQTLF_ 0 0 0 ENST00000350796.7_1_7:6203005-6203218:-|nuORF ENST00000350796.7_1_7:6203005-6203218:-|nuORF ENST00000350796.7_1_7:6203005-6203218:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 335.51526 1003.52395 -0.35969 -0.00012068 -0.34805 -0.00011678 -0.70774 -0.00023746 335.51512356460603 24.852 0.33284 24.852 24.647 24.98 0 0.025977 0.00012557 NaN 0.45834 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1378700 33368 8924 22398 22413 0.02232910854218062 PGRWQTLF 8 Unmodified _PGRWQTLF_ 0 0 0 ENST00000350796.7_1_7:6203005-6203218:-|nuORF ENST00000350796.7_1_7:6203005-6203218:-|nuORF ENST00000350796.7_1_7:6203005-6203218:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 335.51526 1003.52395 0.15118 5.0725E-05 -0.85692 -0.00028751 -0.70574 -0.00023679 335.5148902493831 26.501 0.42023 24.866 24.616 25.037 -1.6347 0.040189 -0.00038663 NaN 0.45834 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1415200 33369 8924 22398 22413 0.02232910854218062 PGRWSEAE 8 Unmodified _PGRWSEAE_ 0 0 0 REV__ENST00000511708.1_1_4:83956588-83956666:+|nuORF REV__ENST00000511708.1_1_4:83956588-83956666:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.1843566894531 3 311.147125 930.419545 NaN NaN NaN NaN NaN NaN NaN 149.54 1 144.34 143.84 144.84 -5.1994 0 0 0 0.21486 1 28967 28967 3.9444 0 1 + 33370 22552 22399 22414 32895 32895 -0.04844835693154437 PGSASAPWVPP 11 Unmodified _PGSASAPWVPP_ 0 0 0 ENST00000526097.1_1_8:11418120-11421614:+|nuORF ENST00000526097.1_1_8:11418120-11421614:+|nuORF ENST00000526097.1_1_8:11418120-11421614:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2694702148438 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 34.299 1 31.981 31.481 32.481 -2.3175 0 0 0 0.21688 1 6292 6292 14.838 0.93222 1 33371 10911 22400 22415 32896 32896 -0.0005883007381726202 PGSATRPTE 9 Unmodified _PGSATRPTE_ 0 0 0 ENST00000519453.3_1_8:22422841-22424331:+|nuORF ENST00000519453.3_1_8:22422841-22424331:+|nuORF ENST00000519453.3_1_8:22422841-22424331:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2301940917969 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.938 1 40.332 39.832 40.832 -2.606 0 0 0 0.19162 1 7736 7736 1.2148 0 1 33372 10820 22401 22416 32897 32897 -0.014885665216752386 PGSEEQLHGQY 11 Unmodified _PGSEEQLHGQY_ 0 0 0 REV__ENST00000472267.5_1_6:30587673-30593571:+|nuORF REV__ENST00000472267.5_1_6:30587673-30593571:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7660522460938 2 622.780741 1243.54693 NaN NaN NaN NaN NaN NaN NaN 85.588 1 85.588 85.088 86.088 0 0 0 0 0.22862 1 16704 16704 9.3831 1.2276 1 + 33373 19547 22402 22417 32898 32898 -0.06510159609592847 PGSFLIYLLE 10 Unmodified _PGSFLIYLLE_ 0 0 0 ENST00000261712.7_1_17:30808784-30808997:+|nuORF ENST00000261712.7_1_17:30808784-30808997:+|nuORF ENST00000261712.7_1_17:30808784-30808997:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.314697265625 2 576.320983 1150.62741 NaN NaN NaN NaN NaN NaN NaN 157.99 1 152.72 152.22 153.22 -5.2748 0 0 0 0.22588 1 30663 30663 6.7232 0.51738 1 33374 8305 22403 22418 32899 32899 0.058123534513924824 PGSGGPVF 8 Unmodified _PGSGGPVF_ 0 0 0 CON__Q0VCM5 CON__Q0VCM5 CON__Q0VCM5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 359.2485656738281 2 359.181946 716.34934 0.61475 0.00022081 1.3043 0.00046848 1.9191 0.00068929 359.18234427767027 120.98 0.908 116.3 115.86 116.77 -4.6873 55 25 3 0 0 0 0.89147 1 23245 23245 0.12286 0 1 6750800 + 33375 680 22404 22419 32900 32900 -0.02018089290959324 PGSGNGGG 8 Unmodified _PGSGNGGG_ 0 0 0 REV__ENST00000422506.5_1_22:24056493-24059433:-|nuORF REV__ENST00000422506.5_1_22:24056493-24059433:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2740478515625 1 602.252879 601.245603 0.51306 0.00030899 3.6726 0.0022119 4.1857 0.0025209 602.2528226227228 158.96 0.18306 153.69 153.55 153.73 -5.2712 5 4 2 0 0 0 1.0268 1 30831 30831 0 0 1 458930 + 33376 21521 22405 22420 32901 32901 -0.07096996398615829 PGSLSRNTSF 10 Unmodified _PGSLSRNTSF_ 0 0 0 FBXO34|p.N306T|1|0.15|ENSG00000178974|chr14:55351307-55351307|A/C|missense_variant FBXO34|p.N306T|1|0.15|ENSG00000178974|chr14:55351307-55351307|A/C|missense_variant FBXO34|p.N306T|1|0.15|ENSG00000178974|chr14:55351307-55351307|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26904296875 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 165.93 1 165.93 165.43 166.43 0 0 0 0 0.22583 1 33734 33734 13.906 0.86358 1 33377 11804 22406 22421 32902 32902 -0.004609195675357114 PGSMCLCEV 9 Unmodified _PGSMCLCEV_ 0 0 0 REV__ENST00000472013.1_1_1:42925866-42925989:+|nuORF REV__ENST00000472013.1_1_1:42925866-42925989:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1793212890625 3 313.464192 937.370745 -0.58548 -0.00018353 0.34299 0.00010751 -0.2425 -7.6015E-05 313.4642258227185 58.893 1.006 55.687 55.128 56.134 -3.2052 64 28 3 0 0 0 0.8825 1 11074 11074 0.23584 0.23584 1 3345700 + 33378 22046 22407 22422 32903 32903 -0.10044531640426158 PGSMCLCEV 9 Unmodified _PGSMCLCEV_ 0 0 0 REV__ENST00000472013.1_1_1:42925866-42925989:+|nuORF REV__ENST00000472013.1_1_1:42925866-42925989:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 313.464192 937.370745 -0.35461 -0.00011116 0.047169 1.4786E-05 -0.30744 -9.6372E-05 313.46412710628266 58.419 1.0074 55.509 55.032 56.039 -2.9105 -0.040056 2.1797E-06 NaN 0.23584 65 28 3 NaN NaN NaN NaN 0 NaN NaN 0 5330300 + 33379 22046 22407 22422 -0.10044531640426158 PGSPAINGRS 10 Unmodified _PGSPAINGRS_ 0 0 0 KXD1|p.Q156P|1|0.34|ENSG00000105700|chr19:18568567-18568567|A/C|missense_variant;ENSG00000105700|ENST00000222307|KXD1 KXD1|p.Q156P|1|0.34|ENSG00000105700|chr19:18568567-18568567|A/C|missense_variant KXD1|p.Q156P|1|0.34|ENSG00000105700|chr19:18568567-18568567|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.2124328613281 3 319.170041 954.488293 NaN NaN NaN NaN NaN NaN NaN 58.962 1 55.71 55.21 56.21 -3.2517 0 0 0 0.22588 1 10962 10962 1.5923 0.11038 1 33380 2334 22408 22423 32904 32904 0.009228286065649627 PGSSAEKASK 10 Unmodified _PGSSAEKASK_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2498474121094 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 76.939 1 76.939 76.439 77.439 0 0 0 0 0.22544 1 14953 14953 19.257 1.122 1 33381 3655 22409 22424 32905 32905 0.005799891668516466 PGSSSGPVP 9 Unmodified _PGSSSGPVP_ 0 0 0 REV__nc|ENSG00000137098|Q99932-1|SPAG8 REV__nc|ENSG00000137098|Q99932-1|SPAG8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3872680664062 1 784.383559 783.376283 0.55082 0.00043205 0.16277 0.00012767 0.71359 0.00055973 784.383569730959 37.775 1.2937 37.775 37.06 38.354 0 79 36 3 0 0 0 0.085258 1 7008 7008 60.39 2.9182 1 8153900 + 33382 16376 22410 22425 32906 32906 -0.02407025470415647 PGSSSGPVP 9 Unmodified _PGSSSGPVP_ 0 0 0 REV__nc|ENSG00000137098|Q99932-1|SPAG8 REV__nc|ENSG00000137098|Q99932-1|SPAG8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3868408203125 1 784.383559 783.376283 0.28989 0.00022738 0.24137 0.00018933 0.53126 0.00041671 784.3837015817328 40.257 1.3429 37.623 36.914 38.257 -2.6348 82 37 3 0 0 0 0.043281 2 7538 7494;7538 60.39 2.9182 1 7948700 + 33383 16376 22410 22425 32907;32908 32908 -0.02407025470415647 PGSSSGPVP 9 Unmodified _PGSSSGPVP_ 0 0 0 REV__nc|ENSG00000137098|Q99932-1|SPAG8 REV__nc|ENSG00000137098|Q99932-1|SPAG8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3865356445312 1 784.383559 783.376283 0.29466 0.00023112 0.36493 0.00028624 0.65958 0.00051737 784.3837568888655 40.146 1.3005 37.657 37.019 38.319 -2.4896 78 36 3 0 0 0 0.085258 2 7181 7181;7230 60.39 2.9182 1 8910900 + 33384 16376 22410 22425 32909;32910 32909 -0.02407025470415647 PGSTVLVEGGY 11 Unmodified _PGSTVLVEGGY_ 0 0 0 nc|ENSG00000183283|Q15038-3|DAZAP2;nc|ENSG00000183283|Q15038-6|DAZAP2;nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2 nc|ENSG00000183283|Q15038-3|DAZAP2 nc|ENSG00000183283|Q15038-3|DAZAP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2618408203125 2 539.774396 1077.53424 0.4454 0.00024041 0.11404 6.1556E-05 0.55944 0.00030197 539.7743729550697 72.757 0.62979 69.218 68.914 69.544 -3.5385 45 17 4 0 0 0 0.68099 1 13790 13790 13.042 0.51092 1 4067900 33385 6838 22411 22426 32911 32911 -0.0014257100183385774 PGSYWDGR 8 Unmodified _PGSYWDGR_ 0 0 0 REV__ENSG00000118564|ENST00000341285|FBXL5 REV__ENSG00000118564|ENST00000341285|FBXL5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.697265625 3 313.143603 936.40898 NaN NaN NaN NaN NaN NaN NaN 36.49 1 34.096 33.596 34.596 -2.3938 0 0 0 0.21486 1 6740 6740 1.6526 0 1 + 33386 15558 22412 22427 32912 32912 -0.06176818347569224 PGTAGNRH 8 Unmodified _PGTAGNRH_ 0 0 0 ENST00000519868.1_1_5:169508643-169509859:+|nuORF ENST00000519868.1_1_5:169508643-169509859:+|nuORF ENST00000519868.1_1_5:169508643-169509859:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.322509765625 2 405.204276 808.393999 NaN NaN NaN NaN NaN NaN NaN 31.053 1 28.937 28.437 29.437 -2.1167 0 0 0 0.21323 1 5626 5626 14.582 1.0738 1 33387 10826 22413 22428 32913 32913 -0.017862654249142906 PGTALGPA 8 Unmodified _PGTALGPA_ 0 0 0 ENST00000546139.5_1_11:64054295-64055396:+|nuORF ENST00000546139.5_1_11:64054295-64055396:+|nuORF ENST00000546139.5_1_11:64054295-64055396:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.1850280761719 2 342.189771 682.36499 NaN NaN NaN NaN NaN NaN NaN 18.773 1 17.463 16.963 17.963 -1.3109 0 0 0 0.23899 1 3067 3067 1.3295 0 1 33388 11127 22414 22429 32914 32914 0.01110197226080345 PGTEPTANS 9 Unmodified _PGTEPTANS_ 0 0 0 ENSG00000132464|ENST00000396073|ENAM;ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant ENSG00000132464|ENST00000396073|ENAM ENSG00000132464|ENST00000396073|ENAM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2212219238281 2 437.201064 872.387576 NaN NaN NaN NaN NaN NaN NaN 46.043 1 43.177 42.677 43.677 -2.8653 0 0 0 0.22621 1 8362 8362 15.847 1.0089 1 33389 3729 22415 22430 32915 32915 -0.053722481669524313 PGTHRNMMWKC 11 Unmodified _PGTHRNMMWKC_ 0 0 0 ASPHD2|p.E112Sfs*109|1|0.3|ENSG00000128203|chr22:26433948-26433948|T/-|frameshift_variant ASPHD2|p.E112Sfs*109|1|0.3|ENSG00000128203|chr22:26433948-26433948|T/-|frameshift_variant ASPHD2|p.E112Sfs*109|1|0.3|ENSG00000128203|chr22:26433948-26433948|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7629089355469 3 454.207227 1359.59985 NaN NaN NaN NaN NaN NaN NaN 88.916 1 85.124 84.624 85.624 -3.7926 0 0 0 0.22632 1 17395 17395 0.2986 0.26719 1 33390 238 22416 22431 32916 32916 -0.06556519623813983 PGTLSWYYSAV 11 Unmodified _PGTLSWYYSAV_ 0 0 0 REV__ENSG00000166428|ENST00000392593|PLD4 REV__ENSG00000166428|ENST00000392593|PLD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7711181640625 2 622.303321 1242.59209 0.39785 0.00024758 -2.1298 -0.0013254 -1.7319 -0.0010778 622.8016833352937 131.23 0.17593 131.23 131.08 131.26 0 7 4 2 0 0 0 0.88504 1 25921 25921 0.03141 0 1 1988300 + 33391 17847 22417 22432 32917 32917 -0.01950309076460144 PGTPFARFP 9 Unmodified _PGTPFARFP_ 0 0 0 ENST00000301043.10_2_17:27045284-27045428:-|nuORF ENST00000301043.10_2_17:27045284-27045428:-|nuORF ENST00000301043.10_2_17:27045284-27045428:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 330.0126647949219 3 330.511627 988.513051 0.069202 2.2872E-05 0.69265 0.00022893 0.76185 0.0002518 330.5114178671981 25.236 1.0347 23.702 23.367 24.402 -1.5342 48 29 3 0 0 0 0.88211 1 4264 4264 1.1933 0 1 1332300 33392 8554 22418 22433 32918 32918 0.018335084799446122 PGTPFARFP 9 Unmodified _PGTPFARFP_ 0 0 0 ENST00000301043.10_2_17:27045284-27045428:-|nuORF ENST00000301043.10_2_17:27045284-27045428:-|nuORF ENST00000301043.10_2_17:27045284-27045428:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 330.511627 988.513051 0.8601 0.00028427 -0.11019 -3.6418E-05 0.74991 0.00024785 330.5110904394652 25.288 0.66357 23.64 23.371 24.035 -1.6482 -0.023238 -0.00020363 NaN 1.1933 35 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1526400 33393 8554 22418 22433 0.018335084799446122 PGTRRLIL 8 Unmodified _PGTRRLIL_ 0 0 0 REV__ENST00000343505.9_2_6:138768140-138794549:-|nuORF REV__ENST00000343505.9_2_6:138768140-138794549:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 309.1665344238281 3 309.202905 924.586885 NaN NaN NaN NaN NaN NaN NaN 46.151 1 46.151 45.651 46.651 0 0 0 0 0.21486 1 8690 8690 0.45834 0 1 + 33394 15715 22419 22434 32919 32919 0.12157476642289566 PGTSLLYY 8 Unmodified _PGTSLLYY_ 0 0 0 REV__ENSG00000196159|ENST00000394329|FAT4 REV__ENSG00000196159|ENST00000394329|FAT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23638916015625 2 457.236919 912.459284 0.078629 3.5952E-05 -0.29403 -0.00013444 -0.2154 -9.8488E-05 457.2348968437209 36.22 1.1102 33.872 33.406 34.516 -2.3479 73 31 4 0 0 0 0.69085 1 6422 6422 15.768 2.2603 1 2316900 + 33395 19222 22420 22435 32920 32920 -0.0004470874243907019 PGTSYRVTL 9 Unmodified _PGTSYRVTL_ 0 0 0 ENSG00000262655|ENST00000576479|SPON1 ENSG00000262655|ENST00000576479|SPON1 ENSG00000262655|ENST00000576479|SPON1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.0054016113281 3 331.850308 992.529095 0.13268 4.403E-05 -0.16272 -5.4E-05 -0.030045 -9.9704E-06 331.8502101550242 36.392 2.2763 34.044 32.58 34.856 -2.3479 195 65 4 0 0 0 0.88054 1 6587 6587 4.5289 0.33936 1 7876800 33396 7968 22421 22436 32921 32921 0.03253169926199462 PGTYGLRIC 9 Unmodified _PGTYGLRIC_ 0 0 0 REV__ENST00000563642.6_1_16:1495953-1496133:-|nuORF REV__ENST00000563642.6_1_16:1495953-1496133:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25628662109375 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 59.016 1 55.764 55.264 56.264 -3.2517 0 0 0 0.20155 1 10974 10974 23.148 3.8914 1 + 33397 23082 22422 22437 32922 32922 0.005578448826327076 PGVEREVN 8 Unmodified _PGVEREVN_ 0 0 0 REV__ENST00000577731.1_1_17:7478540-7480862:+|nuORF REV__ENST00000577731.1_1_17:7478540-7480862:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 450.1293029785156 2 450.232699 898.450845 NaN NaN NaN NaN NaN NaN NaN 29.257 1 29.257 28.757 29.757 0 0 0 0 0.21486 1 5221 5221 5.7604 0 1 + 33398 23218 22423 22438 32923 32923 -0.0024426265905503897 PGVFGERGP 9 Unmodified _PGVFGERGP_ 0 0 0 COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant;ENSG00000196739|ENST00000356083|COL27A1;COL27A1|p.E1076Sfs*7|1|0.43|ENSG00000196739|chr9:114264382-114264382|G/-|frameshift_variant;COL27A1|p.P816Lfs*10|1|0.52|ENSG00000196739|chr9:114222243-114222243|C/-|frameshift_variant;COL27A1|p.E848Sfs*4|1|0.46|ENSG00000196739|chr9:114231839-114231839|G/-|frameshift_variant;COL27A1|p.P918Lfs*9|1|0.21|ENSG00000196739|chr9:114240240-114240240|C/-|frameshift_variant COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23779296875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 60.941 1 58.008 57.508 58.508 -2.9333 0 0 0 0.22962 1 11735 11735 14.838 2.3067 1 33399 625 22424 22439 32924 32924 0.00036345066178000707 PGVFGERGP 9 Unmodified _PGVFGERGP_ 0 0 0 COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant;ENSG00000196739|ENST00000356083|COL27A1;COL27A1|p.E1076Sfs*7|1|0.43|ENSG00000196739|chr9:114264382-114264382|G/-|frameshift_variant;COL27A1|p.P816Lfs*10|1|0.52|ENSG00000196739|chr9:114222243-114222243|C/-|frameshift_variant;COL27A1|p.E848Sfs*4|1|0.46|ENSG00000196739|chr9:114231839-114231839|G/-|frameshift_variant;COL27A1|p.P918Lfs*9|1|0.21|ENSG00000196739|chr9:114240240-114240240|C/-|frameshift_variant COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.238525390625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 78.761 1 74.956 74.456 75.456 -3.8048 0 0 0 0.23508 1 14939 14939 7.9102 2.6795 1 33400 625 22424 22439 32925 32925 0.00036345066178000707 PGVFGGPY 8 Unmodified _PGVFGGPY_ 0 0 0 nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 397.2056579589844 2 397.197596 792.38064 NaN NaN NaN NaN NaN NaN NaN 81.706 1 78.149 77.649 78.649 -3.557 0 0 0 0.21486 1 15961 15961 2.8892 0 1 33401 1163 22425 22440 32926 32926 -0.02385516256867959 PGVQAVHKA 9 Unmodified _PGVQAVHKA_ 0 0 0 ENSG00000038945|ENST00000262101|MSR1 ENSG00000038945|ENST00000262101|MSR1 ENSG00000038945|ENST00000262101|MSR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7627258300781 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 143.36 1 138.47 137.97 138.97 -4.8982 0 0 0 0.19684 1 27672 27672 0.12781 0 1 33402 1185 22426 22441 32927 32927 0.051766243371730525 PGWARLPPK 9 Unmodified _PGWARLPPK_ 0 0 0 ENST00000272233.5_1_2:20648022-20648460:+|nuORF ENST00000272233.5_1_2:20648022-20648460:+|nuORF ENST00000272233.5_1_2:20648022-20648460:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.17938232421875 3 341.202905 1020.58688 -0.079213 -2.7028E-05 -0.55813 -0.00019044 -0.63735 -0.00021746 341.2026946947911 111.42 0.66151 107.2 106.94 107.6 -4.2289 25 18 2 0 0 0 0.884 1 21395 21395 1.1933 0.92432 1 1215400 33403 8407 22427 22442 32928 32928 0.07741476642274847 PGWARLPPK 9 Unmodified _PGWARLPPK_ 0 0 0 ENST00000272233.5_1_2:20648022-20648460:+|nuORF ENST00000272233.5_1_2:20648022-20648460:+|nuORF ENST00000272233.5_1_2:20648022-20648460:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 341.202905 1020.58688 -0.20109 -6.8614E-05 -0.52776 -0.00018007 -0.72885 -0.00024869 341.20258399134315 107.72 0.55708 107.72 107.48 108.03 0 0.2557 -8.9081E-05 NaN 1.1933 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1067400 33404 8407 22427 22442 0.07741476642274847 PGWARLPPK 9 Unmodified _PGWARLPPK_ 0 0 0 ENST00000272233.5_1_2:20648022-20648460:+|nuORF ENST00000272233.5_1_2:20648022-20648460:+|nuORF ENST00000272233.5_1_2:20648022-20648460:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 341.202905 1020.58688 -0.53226 -0.00018161 -0.089271 -3.046E-05 -0.62153 -0.00021207 341.20281772654914 111.89 0.53597 107.47 107.16 107.7 -4.4231 0.0083705 0.00035976 NaN 1.1933 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1400800 33405 8407 22427 22442 0.07741476642274847 PGWFSLAP 8 Unmodified _PGWFSLAP_ 0 0 0 REV__ENST00000493772.5_1_20:62372637-62374340:+|nuORF REV__ENST00000493772.5_1_20:62372637-62374340:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23370361328125 2 437.726521 873.438489 0.00018097 7.9217E-08 -0.79231 -0.00034681 -0.79213 -0.00034673 437.7261519154714 50.696 0.51915 47.651 47.389 47.909 -3.0453 29 14 3 0 0 0 0.89552 1 9265 9265 19.439 14.683 1 2492500 + 33406 22356 22428 22443 32929 32929 -0.0032925433143873306 PGWRLCRRYP 10 Unmodified _PGWRLCRRYP_ 0 0 0 ENST00000348159.8_1_1:156453152-156470609:-|nuORF ENST00000348159.8_1_1:156453152-156470609:-|nuORF ENST00000348159.8_1_1:156453152-156470609:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 434.8952331542969 3 435.23287 1302.67678 -0.11006 -4.7901E-05 -0.96183 -0.00041862 -1.0719 -0.00046652 435.23253212977465 40.677 0.77232 38.187 37.936 38.708 -2.4896 47 21 3 0 0 0 0.91149 1 7329 7329 3.8763 0.80407 1 941250 33407 8915 22429 22444 32930 32930 0.03754782979194715 PGWRLCRRYP 10 Unmodified _PGWRLCRRYP_ 0 0 0 ENST00000348159.8_1_1:156453152-156470609:-|nuORF ENST00000348159.8_1_1:156453152-156470609:-|nuORF ENST00000348159.8_1_1:156453152-156470609:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 435.23287 1302.67678 0.24699 0.0001075 -1.3263 -0.00057724 -1.0793 -0.00046974 435.232295138424 37.96 0.8125 37.96 37.683 38.495 0 -0.17267 -0.00035808 NaN 3.8763 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1587900 33408 8915 22429 22444 0.03754782979194715 PGWRLCRRYP 10 Unmodified _PGWRLCRRYP_ 0 0 0 ENST00000348159.8_1_1:156453152-156470609:-|nuORF ENST00000348159.8_1_1:156453152-156470609:-|nuORF ENST00000348159.8_1_1:156453152-156470609:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 435.23287 1302.67678 -0.34608 -0.00015063 -0.82632 -0.00035964 -1.1724 -0.00051027 435.2325177171138 40.885 0.67175 38.251 37.97 38.642 -2.6348 0.11804 0.00029471 NaN 3.8763 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1174100 33409 8915 22429 22444 0.03754782979194715 PGWRPPSQP 9 Unmodified _PGWRPPSQP_ 0 0 0 ENST00000551538.5_1_14:105961883-105962582:+|nuORF ENST00000551538.5_1_14:105961883-105962582:+|nuORF ENST00000551538.5_1_14:105961883-105962582:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.1784973144531 3 341.178648 1020.51411 NaN NaN NaN NaN NaN NaN NaN 90.833 1 87.055 86.555 87.555 -3.7779 0 0 0 0.23508 1 17384 17384 1.1933 0 1 33410 11187 22430 22445 32931 32931 0.004677228488503715 PGWVMPPLWC 10 Unmodified _PGWVMPPLWC_ 0 0 0 REV__ENST00000355387.6_1_1:45116522-45116732:+|nuORF REV__ENST00000355387.6_1_1:45116522-45116732:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 395.85693359375 3 395.857641 1184.55109 NaN NaN NaN NaN NaN NaN NaN 9.5903 1 8.5557 8.0557 9.0557 -1.0347 0 0 0 0.22588 1 989 989 0 0 1 + 33411 20789 22431 22446 32932 32932 -0.033800649212480494 PGWVYIPP 8 Unmodified _PGWVYIPP_ 0 0 0 ENST00000553112.5_1_12:113834968-113841579:-|nuORF;SDS|p.D187Tfs*39|1|0.24|ENSG00000135094|chr12:113397259-113397259|C/-|frameshift_variant;SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS ENST00000553112.5_1_12:113834968-113841579:-|nuORF ENST00000553112.5_1_12:113834968-113841579:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698913574219 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 16.051 1 16.051 15.551 16.551 0 0 0 0 0.21486 1 2480 2480 0.45834 0 1 33412 3900 22432 22447 32933 32933 0.018796052197103563 PGWVYIPP 8 Unmodified _PGWVYIPP_ 0 0 0 ENST00000553112.5_1_12:113834968-113841579:-|nuORF;SDS|p.D187Tfs*39|1|0.24|ENSG00000135094|chr12:113397259-113397259|C/-|frameshift_variant;SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS ENST00000553112.5_1_12:113834968-113841579:-|nuORF ENST00000553112.5_1_12:113834968-113841579:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 21.128 1 21.128 20.628 21.628 0 0 0 0 0.21486 1 3524 3524 0.45834 0 1 33413 3900 22432 22447 32934 32934 0.018796052197103563 PGWVYIPP 8 Unmodified _PGWVYIPP_ 0 0 0 ENST00000553112.5_1_12:113834968-113841579:-|nuORF;SDS|p.D187Tfs*39|1|0.24|ENSG00000135094|chr12:113397259-113397259|C/-|frameshift_variant;SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS ENST00000553112.5_1_12:113834968-113841579:-|nuORF ENST00000553112.5_1_12:113834968-113841579:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2222595214844 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 27.51 1 27.51 27.01 28.01 0 0 0 0 0.21486 1 4854 4854 0.45834 0 1 33414 3900 22432 22447 32935 32935 0.018796052197103563 PGWVYIPP 8 Unmodified _PGWVYIPP_ 0 0 0 ENST00000553112.5_1_12:113834968-113841579:-|nuORF;SDS|p.D187Tfs*39|1|0.24|ENSG00000135094|chr12:113397259-113397259|C/-|frameshift_variant;SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS ENST00000553112.5_1_12:113834968-113841579:-|nuORF ENST00000553112.5_1_12:113834968-113841579:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.23089599609375 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 27.666 1 27.666 27.166 28.166 0 0 0 0 0.21486 1 4887 4887 0.45834 0 1 33415 3900 22432 22447 32936 32936 0.018796052197103563 PGWVYIPP 8 Unmodified _PGWVYIPP_ 0 0 0 ENST00000553112.5_1_12:113834968-113841579:-|nuORF;SDS|p.D187Tfs*39|1|0.24|ENSG00000135094|chr12:113397259-113397259|C/-|frameshift_variant;SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS ENST00000553112.5_1_12:113834968-113841579:-|nuORF ENST00000553112.5_1_12:113834968-113841579:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.22235107421875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 47.37 1 47.37 46.87 47.87 0 0 0 0 0.21486 1 8932 8932 0.45834 0 1 33416 3900 22432 22447 32937 32937 0.018796052197103563 PGYFPHPD 8 Unmodified _PGYFPHPD_ 0 0 0 PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2 PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2500305175781 2 465.211235 928.407917 NaN NaN NaN NaN NaN NaN NaN 109.08 1 104.7 104.2 105.2 -4.3776 0 0 0 0.23366 1 21499 21499 0.12286 0 1 33417 2404 22433 22448 32938 32938 -0.059150327164843475 PGYLRPQR 8 Unmodified _PGYLRPQR_ 0 0 0 nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10 nc|ENSG00000162571|Q6ZVT0-3|TTLL10 nc|ENSG00000162571|Q6ZVT0-3|TTLL10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 330.0129089355469 3 329.522526 985.545748 0.29079 9.5821E-05 -0.67025 -0.00022086 -0.37946 -0.00012504 329.52223192087024 28.615 0.55531 26.86 26.597 27.152 -1.7552 26 15 3 0 0 0 1.0265 1 4851 4851 3.9444 0 1 580060 33418 5344 22434 22449 32939 32939 0.05239715602795059 PGYLRPQR 8 Unmodified _PGYLRPQR_ 0 0 0 nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10 nc|ENSG00000162571|Q6ZVT0-3|TTLL10 nc|ENSG00000162571|Q6ZVT0-3|TTLL10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 329.522526 985.545748 -0.38015 -0.00012527 0.27335 9.0075E-05 -0.1068 -3.5193E-05 329.52263358729607 26.622 0.48162 26.622 26.426 26.907 0 -0.18936 0.00059119 NaN 3.9444 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 538360 33419 5344 22434 22449 0.05239715602795059 PGYLRPQR 8 Unmodified _PGYLRPQR_ 0 0 0 nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10 nc|ENSG00000162571|Q6ZVT0-3|TTLL10 nc|ENSG00000162571|Q6ZVT0-3|TTLL10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 329.522526 985.545748 0.4497 0.00014819 -0.6636 -0.00021867 -0.2139 -7.0484E-05 329.5222144424437 28.873 0.47869 26.917 26.536 27.015 -1.9561 0.10565 -0.00033504 NaN 3.9444 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 632200 33420 5344 22434 22449 0.05239715602795059 PGYLRPQR 8 Unmodified _PGYLRPQR_ 0 0 0 nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10 nc|ENSG00000162571|Q6ZVT0-3|TTLL10 nc|ENSG00000162571|Q6ZVT0-3|TTLL10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 329.522526 985.545748 -0.30834 -0.0001016 -0.43425 -0.0001431 -0.74259 -0.0002447 329.5224667178814 28.841 0.55948 26.845 26.519 27.078 -1.9962 0.034322 -0.00010832 NaN 3.9444 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 737060 33421 5344 22434 22449 0.05239715602795059 PGYTAFWQ 8 Unmodified _PGYTAFWQ_ 0 0 0 nc|ENSG00000143147|Q8N6U8-3|GPR161;nc|ENSG00000143147|Q8N6U8-2|GPR161;nc|ENSG00000143147|Q8N6U8-5|GPR161;ENST00000493800.1_1_1:168059784-168074118:-|nuORF;nc|ENSG00000143147|Q8N6U8-4|GPR161;ENSG00000143147|ENST00000682931|GPR161;nc|ENSG00000143147|Q8N6U8-6|GPR161 nc|ENSG00000143147|Q8N6U8-3|GPR161 nc|ENSG00000143147|Q8N6U8-3|GPR161 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1803894042969 3 323.820349 968.439217 -0.7848 -0.00025413 1.1231 0.00036367 0.33826 0.00010954 323.82063687462056 64.059 0.6983 64.059 63.642 64.341 0 35 19 3 0 0 0 1.0277 1 12285 12285 0.40072 0.40072 1 2472800 33422 4455 22435 22450 32940 32940 -0.04626459682378936 PHAAAGLEWQ 10 Unmodified _PHAAAGLEWQ_ 0 0 0 REV__ENST00000472755.1_1_3:52266083-52266224:-|nuORF REV__ENST00000472755.1_1_3:52266083-52266224:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2143249511719 3 360.513807 1078.51959 0.059486 2.1446E-05 -0.12891 -4.6472E-05 -0.069419 -2.5027E-05 360.51372012580526 25.085 0.69455 23.551 23.229 23.924 -1.5342 56 19 4 0 0 0 0.91149 1 4170 4170 6.6304 1.3335 1 23081000 + 33423 22060 22436 22451 32941 32941 -0.01652598359351032 PHAPLPATFFY 11 Unmodified _PHAPLPATFFY_ 0 0 0 REV__ENST00000603475.1_1_9:90582379-90582652:-|nuORF REV__ENST00000603475.1_1_9:90582379-90582652:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7645874023438 2 630.824224 1259.63389 NaN NaN NaN NaN NaN NaN NaN 107.99 1 103.58 103.08 104.08 -4.4121 0 0 0 0.23264 1 20718 20718 6.2058 0.47393 1 + 33424 13355 22437 22452 32942 32942 0.014462914027717488 PHATSGPRP 9 Unmodified _PHATSGPRP_ 0 0 0 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217;REV__KIAA1217|p.G1042Efs*92|1|0.09|ENSG00000120549|chr10:24531867-24531867|G/-|frameshift_variant REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2395935058594 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 75.505 1 72.089 71.589 72.589 -3.4151 0 0 0 0.19691 1 14727 14727 0.20686 0 1 + 33425 15625;23713 22438 22453 32943 32943 0.0046686329772001045 PHAVLAAA 8 Unmodified _PHAVLAAA_ 0 0 0 REV__ENSG00000139800|ENST00000267294|ZIC5 REV__ENSG00000139800|ENST00000267294|ZIC5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21868896484375 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 56.078 1 53.183 52.683 53.683 -2.8944 0 0 0 0.2396 1 10739 10739 0.12286 0 1 + 33426 16544 22439 22454 32944 32944 0.03889878871359542 PHCRECTQ 8 Unmodified _PHCRECTQ_ 0 0 0 REV__ENSG00000099139|ENST00000674117|PCSK5 REV__ENSG00000099139|ENST00000674117|PCSK5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.1651611328125 3 325.137466 972.390569 -0.3648 -0.00011861 -0.0064891 -2.1098E-06 -0.37128 -0.00012072 325.13740922760445 89.18 0.55536 85.387 85.09 85.646 -3.7926 20 15 2 0 0 0 1.0276 1 17418 17418 1.8442 0 1 1541600 + 33427 14629 22440 22455 32945 32945 -0.0967301958543203 PHCRECTQ 8 Unmodified _PHCRECTQ_ 0 0 0 REV__ENSG00000099139|ENST00000674117|PCSK5 REV__ENSG00000099139|ENST00000674117|PCSK5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 325.137466 972.390569 -0.48576 -0.00015794 -0.24092 -7.8333E-05 -0.72668 -0.00023627 325.13736527108523 89.236 0.45683 85.464 85.214 85.671 -3.7723 0.038231 -0.0001041 NaN 1.8442 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1001400 + 33428 14629 22440 22455 -0.0967301958543203 PHCRTRIGF 9 Unmodified _PHCRTRIGF_ 0 0 0 ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-3|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7855224609375 2 543.78491 1085.55527 NaN NaN NaN NaN NaN NaN NaN 110.9 1 106.41 105.91 106.91 -4.4915 0 0 0 0.23508 1 21286 21286 9.3474 2.6243 1 33429 4834 22441 22456 32946 32946 0.01591160616681009 PHDERPDESY 10 Unmodified _PHDERPDESY_ 0 0 0 REV__CON__Q28107 REV__CON__Q28107 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7659912109375 2 622.762549 1243.51054 NaN NaN NaN NaN NaN NaN NaN 61.251 1 61.251 60.751 61.751 0 0 0 0 0.22588 1 11752 11752 3.9444 0 1 + + 33430 13535 22442 22457 32947 32947 -0.10147036506327822 PHFIRRLR 8 Unmodified _PHFIRRLR_ 0 0 0 REV__ENST00000264071.6_1_19:6501614-6502320:-|nuORF REV__ENST00000264071.6_1_19:6501614-6502320:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7772827148438 2 547.838334 1093.66212 NaN NaN NaN NaN NaN NaN NaN 57.974 1 54.769 54.269 55.269 -3.2052 0 0 0 0.2396 1 10812 10812 0.0082765 0 1 + 33431 20228 22443 22458 32948 32948 0.11903078893351449 PHFQACMVYH 10 Unmodified _PHFQACMVYH_ 0 0 0 REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.1075744628906 3 411.516166 1231.52667 -0.27385 -0.00011269 -0.51008 -0.00020991 -0.78393 -0.0003226 411.51601561369864 59.391 0.43561 59.391 59.141 59.577 0 21 11 3 0 0 0 0.91149 1 11354 11354 0.15932 0.15932 1 975920 + 33432 13562 22444 22459 32949 32949 -0.0798332507476971 PHFQACMVYH 10 Unmodified _PHFQACMVYH_ 0 0 0 REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 411.516166 1231.52667 -0.10876 -4.4756E-05 -0.86268 -0.00035501 -0.97144 -0.00039976 411.5157505274734 62.309 0.35649 59.347 59.214 59.571 -2.9614 -0.032325 -0.00017955 NaN 0.15932 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 582900 + 33433 13562 22444 22459 -0.0798332507476971 PHFQACMVYH 10 Unmodified _PHFQACMVYH_ 0 0 0 REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 411.516166 1231.52667 -0.18389 -7.5672E-05 -0.8687 -0.00035749 -1.0526 -0.00043316 411.85005324491414 62.64 0.31673 59.4 59.207 59.523 -3.2395 0.020882 -0.00018698 NaN 0.15932 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 868710 + 33434 13562 22444 22459 -0.0798332507476971 PHFYIADF 8 Unmodified _PHFYIADF_ 0 0 0 REV__ENST00000482213.1_1_22:50688804-50689303:-|nuORF REV__ENST00000482213.1_1_22:50688804-50689303:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.15081787109375 3 337.164116 1008.47052 NaN NaN NaN NaN NaN NaN NaN 84.421 1 80.71 80.21 81.21 -3.7117 0 0 0 0.21486 1 16125 16125 1.8442 0 1 + 33435 14712 22445 22460 32950 32950 -0.03337886648307631 PHGAMGSY 8 Unmodified _PHGAMGSY_ 0 0 0 ENSG00000125816|ENST00000351817|NKX2-4 ENSG00000125816|ENST00000351817|NKX2-4 ENSG00000125816|ENST00000351817|NKX2-4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 410.1147155761719 2 410.176338 818.338123 NaN NaN NaN NaN NaN NaN NaN 95.33 1 91.139 90.639 91.639 -4.1911 0 0 0 0.21486 1 18193 18193 6.3541 0.59368 1 33436 3391 22446 22461 32951 32951 -0.07831234656737251 PHGASHGV 8 Unmodified _PHGASHGV_ 0 0 0 REV__ENSG00000177468|ENST00000367734|OLIG3 REV__ENSG00000177468|ENST00000367734|OLIG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2103271484375 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 85.638 1 81.688 81.188 82.188 -3.9503 0 0 0 0.23711 1 16292 16292 0.12286 0 1 + 33437 18560 22447 22462 32952 32952 -0.028130528279007194 PHGKRPKGQF 10 Unmodified _PHGKRPKGQF_ 0 0 0 REV__ENST00000371817.7_1_9:137734384-137734717:+|nuORF REV__ENST00000371817.7_1_9:137734384-137734717:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.335693359375 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 150.55 1 145.43 144.93 145.93 -5.1204 0 0 0 0.22576 1 29176 29176 14.838 0.43289 1 + 33438 21013 22448 22463 32953 32953 0.06666764931219404 PHGKRPKGQF 10 Unmodified _PHGKRPKGQF_ 0 0 0 REV__ENST00000371817.7_1_9:137734384-137734717:+|nuORF REV__ENST00000371817.7_1_9:137734384-137734717:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3116455078125 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 150.6 1 145.48 144.98 145.98 -5.1204 0 0 0 0.22588 1 29187 29187 10.824 1.4408 1 + 33439 21013 22448 22463 32954 32954 0.06666764931219404 PHGPARGDI 9 Unmodified _PHGPARGDI_ 0 0 0 ENST00000592854.5_1_19:10961013-10961118:+|nuORF ENST00000592854.5_1_19:10961013-10961118:+|nuORF ENST00000592854.5_1_19:10961013-10961118:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23931884765625 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 59.167 1 59.167 58.667 59.667 0 0 0 0 0.18274 1 11334 11334 0.37959 0.12811 1 33440 11639 22449 22464 32955 32955 0.004668632977086418 PHGPARGDI 9 Unmodified _PHGPARGDI_ 0 0 0 ENST00000592854.5_1_19:10961013-10961118:+|nuORF ENST00000592854.5_1_19:10961013-10961118:+|nuORF ENST00000592854.5_1_19:10961013-10961118:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2306823730469 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 66.422 1 66.422 65.922 66.922 0 0 0 0 0.23508 1 12829 12829 9.3474 0.75416 1 33441 11639 22449 22464 32956 32956 0.004668632977086418 PHGPARGDI 9 Unmodified _PHGPARGDI_ 0 0 0 ENST00000592854.5_1_19:10961013-10961118:+|nuORF ENST00000592854.5_1_19:10961013-10961118:+|nuORF ENST00000592854.5_1_19:10961013-10961118:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2390441894531 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 70.75 1 67.5 67 68 -3.2492 0 0 0 0.21848 1 13772 13772 18.135 4.6271 1 33442 11639 22449 22464 32957 32957 0.004668632977086418 PHGPARGDI 9 Unmodified _PHGPARGDI_ 0 0 0 ENST00000592854.5_1_19:10961013-10961118:+|nuORF ENST00000592854.5_1_19:10961013-10961118:+|nuORF ENST00000592854.5_1_19:10961013-10961118:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2391357421875 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 73.135 1 69.824 69.324 70.324 -3.3107 0 0 0 0.19638 1 14257 14257 0.87518 0.6237 1 33443 11639 22449 22464 32958 32958 0.004668632977086418 PHGPARGDI 9 Unmodified _PHGPARGDI_ 0 0 0 ENST00000592854.5_1_19:10961013-10961118:+|nuORF ENST00000592854.5_1_19:10961013-10961118:+|nuORF ENST00000592854.5_1_19:10961013-10961118:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2392578125 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 74.022 1 70.657 70.157 71.157 -3.3643 0 0 0 0.19451 1 14437 14437 0.12781 0 1 33444 11639 22449 22464 32959 32959 0.004668632977086418 PHGPARGDI 9 Unmodified _PHGPARGDI_ 0 0 0 ENST00000592854.5_1_19:10961013-10961118:+|nuORF ENST00000592854.5_1_19:10961013-10961118:+|nuORF ENST00000592854.5_1_19:10961013-10961118:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2392578125 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 73.59 1 69.996 69.496 70.496 -3.594 0 0 0 0.19638 1 13969 13969 0.40827 0.2854 1 33445 11639 22449 22464 32960 32960 0.004668632977086418 PHGPSTLAGQT 11 Unmodified _PHGPSTLAGQT_ 0 0 0 REV__ENSG00000189120|ENST00000536300|SP6 REV__ENSG00000189120|ENST00000536300|SP6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2666625976562 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 20.235 1 18.838 18.338 19.338 -1.3966 0 0 0 0.13908 1 3372 3372 29.841 2.2118 1 + 33446 19194 22450 22465 32961 32961 -0.004609195675357114 PHGSCPGR 8 Unmodified _PHGSCPGR_ 0 0 0 ENST00000546421.1_1_12:98909108-98909923:-|nuORF;ENST00000548760.2_1_12:98909161-98909923:-|nuORF ENST00000546421.1_1_12:98909108-98909923:-|nuORF ENST00000546421.1_1_12:98909108-98909923:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.29986572265625 2 405.687404 809.360256 -0.549 -0.00022272 -0.26731 -0.00010844 -0.81631 -0.00033117 405.68721730347073 44.122 1.4032 41.375 40.87 42.273 -2.7475 108 39 4 0 0 0 1.0271 1 8110 8110 0 0 1 11564000 33447 11129 22451 22466 32962 32962 -0.05205010188308279 PHHATLSS 8 Unmodified _PHHATLSS_ 0 0 0 REV__nc|ENSG00000214128|A2RRL7-4|TMEM213 REV__nc|ENSG00000214128|A2RRL7-4|TMEM213 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2364196777344 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 109.7 1 105.52 105.02 106.02 -4.1826 0 0 0 0.21486 1 21111 21111 5.2307 0 1 + 33448 19661 22452 22467 32963 32963 -0.01620514484955038 PHHDHPPHHCH 11 Unmodified _PHHDHPPHHCH_ 0 0 0 REV__FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant REV__FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.8735046386719 3 450.860095 1349.55845 NaN NaN NaN NaN NaN NaN NaN 10.746 1 9.842 9.342 10.342 -0.90401 0 0 0 0.23698 1 1370 1370 0 0 1 + 33449 23542 22453 22468 32964 32964 -0.10234196276610419 PHHHHHHHQ 9 Unmodified _PHHHHHHHQ_ 0 0 0 ENST00000443945.6_1_13:47127426-47279607:+|nuORF;nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000136141|Q9Y2L9|LRCH1;ENSG00000136141|ENST00000389797|LRCH1;ONECUT2|p.H184Q|2|0.25|ENSG00000119547|chr18:57436268-57436268|C/G|missense_variant;LRCH1|p.G54Afs*6|1|0.34|ENSG00000136141|chr13:46553553-46553553|G/-|frameshift_variant;ENSG00000262484|ENST00000571838|CCER2 ENST00000443945.6_1_13:47127426-47279607:+|nuORF ENST00000443945.6_1_13:47127426-47279607:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2744140625 2 602.274421 1202.53429 NaN NaN NaN NaN NaN NaN NaN 5.9361 1 5.3099 4.8099 5.8099 -0.62626 0 0 0 0.23508 1 381 381 0 0 1 33450 9918 22454 22469 32965 32965 -0.05887668647983446 PHHLAGPG 8 Unmodified _PHHLAGPG_ 0 0 0 REV__ENST00000287078.6_1_10:71903674-71905278:-|nuORF REV__ENST00000287078.6_1_10:71903674-71905278:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4067993164062 1 785.405298 784.398021 0.12779 0.00010037 4.1633 0.0032698 4.291 0.0033702 785.4093235731939 111.3 0.21205 106.81 106.64 106.86 -4.4915 8 5 2 0 0 0 0.72231 1 21366 21366 11.114 0 1 1839900 + 33451 20335 22455 22470 32966 32966 -0.002801759311864771 PHHLPSRV 8 Unmodified _PHHLPSRV_ 0 0 0 ENST00000489787.1_1_20:48429459-48431791:+|nuORF ENST00000489787.1_1_20:48429459-48431791:+|nuORF ENST00000489787.1_1_20:48429459-48431791:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.1817932128906 3 314.847121 941.519533 -0.44927 -0.00014145 -1.0735 -0.00033798 -1.5227 -0.00047943 314.8467808810363 29.584 0.96964 29.584 29.195 30.164 0 87 27 5 0 0 0 8448 1 5305 5305 10.074 1.9184 1 35512000 33452 10503 22456 22471 32967 32967 0.046434464313165336 PHKKHKRR 8 Unmodified _PHKKHKRR_ 0 0 0 REV__ENSG00000130287|ENST00000252575|NCAN REV__ENSG00000130287|ENST00000252575|NCAN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.90447998046875 3 362.896698 1085.66826 NaN NaN NaN NaN NaN NaN NaN 14.678 1 14.678 14.178 15.178 0 0 0 0 0.21486 1 2200 2200 0.45834 0.18932 1 + 33453 15993 22457 22472 32968 32968 0.12885597124886772 PHLAEAVGL 9 Unmodified _PHLAEAVGL_ 0 0 0 REV__STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant REV__STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7559509277344 2 453.75581 905.497067 -0.01281 -5.8128E-06 0.24754 0.00011232 0.23473 0.00010651 453.75587200903567 69.433 0.70699 69.433 69.143 69.85 0 37 19 3 0 0 0 0.54354 1 13495 13495 16.942 0 1 6911000 + 33454 15537 22458 22473 32969 32969 0.04053802243049631 PHLHTLTQP 9 Unmodified _PHLHTLTQP_ 0 0 0 nc|ENSG00000260001|H3BV60|TGFBR3L;ENSG00000260001|ENST00000565886|TGFBR3L nc|ENSG00000260001|H3BV60|TGFBR3L nc|ENSG00000260001|H3BV60|TGFBR3L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2791137695312 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 70.198 1 66.618 66.118 67.118 -3.5798 0 0 0 0.23508 1 13229 13229 12.532 0.89125 1 33455 7952 22459 22474 32970 32970 0.03640278537386621 PHLPPPCL 8 Unmodified _PHLPPPCL_ 0 0 0 ENST00000338154.10_1_X:53964145-53964379:-|nuORF ENST00000338154.10_1_X:53964145-53964379:-|nuORF ENST00000338154.10_1_X:53964145-53964379:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2218017578125 2 437.236199 872.457844 NaN NaN NaN NaN NaN NaN NaN 141.04 1 136.05 135.55 136.55 -4.9877 0 0 0 0.23711 1 27155 27155 0.12286 0 1 33456 8826 22460 22475 32971 32971 0.016513786878249448 PHLQEPQA 8 Unmodified _PHLQEPQA_ 0 0 0 REV__ENST00000323078.7_1_7:150034543-150034807:+|nuORF REV__ENST00000323078.7_1_7:150034543-150034807:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2348327636719 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 54.824 1 51.689 51.189 52.189 -3.1352 0 0 0 0.22699 1 10124 10124 1.4551 0.93865 1 + 33457 20564 22461 22476 32972 32972 -0.006559587964261482 PHLTEGIALQ 10 Unmodified _PHLTEGIALQ_ 0 0 0 REV__ENST00000572275.1_1_17:7826969-7827125:-|nuORF REV__ENST00000572275.1_1_17:7826969-7827125:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2093200683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 82.366 1 78.667 78.167 79.167 -3.6985 0 0 0 0.22585 1 15707 15707 13.615 6.5131 1 + 33458 23173 22462 22477 32973 32973 0.046171279889904326 PHLVVGGA 8 Unmodified _PHLVVGGA_ 0 0 0 REV__nc|ENSG00000104755|Q99965-2|ADAM2 REV__nc|ENSG00000104755|Q99965-2|ADAM2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.218505859375 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 58.004 1 54.752 54.252 55.252 -3.2517 0 0 0 0.2396 1 10771 10771 0.0082765 0 1 + 33459 14940 22463 22478 32974 32974 0.038898788713822796 PHMRRFLS 8 Unmodified _PHMRRFLS_ 0 0 0 ENSG00000027847|ENST00000029410|B4GALT7 ENSG00000027847|ENST00000029410|B4GALT7 ENSG00000027847|ENST00000029410|B4GALT7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2799682617188 2 522.282003 1042.54945 NaN NaN NaN NaN NaN NaN NaN 152.07 1 146.83 146.33 147.33 -5.2365 0 0 0 0.21486 1 29483 29483 10.824 2.0785 1 33460 1147 22464 22479 32975 32975 0.029880621050097034 PHMRRFLS 8 Unmodified _PHMRRFLS_ 0 0 0 ENSG00000027847|ENST00000029410|B4GALT7 ENSG00000027847|ENST00000029410|B4GALT7 ENSG00000027847|ENST00000029410|B4GALT7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2689208984375 2 522.282003 1042.54945 NaN NaN NaN NaN NaN NaN NaN 144.62 1 139.67 139.17 140.17 -4.9445 0 0 0 0.23487 1 27939 27939 0.12286 0.049601 1 33461 1147 22464 22479 32976 32976 0.029880621050097034 PHNVIAKQ 8 Unmodified _PHNVIAKQ_ 0 0 0 REV__nc|ENSG00000189079|Q68CP9-3|ARID2 REV__nc|ENSG00000189079|Q68CP9-3|ARID2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7615966796875 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 64.678 1 61.681 61.181 62.181 -2.9975 0 0 0 0.22684 1 12510 12510 1.7423 0 1 + 33462 13116 22465 22480 32977 32977 0.051766243371730525 PHPAGLTP 8 Unmodified _PHPAGLTP_ 0 0 0 ENST00000457052.2_2_19:46265255-46265294:+|nuORF ENST00000457052.2_2_19:46265255-46265294:+|nuORF ENST00000457052.2_2_19:46265255-46265294:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 395.7179260253906 2 395.216321 788.418088 -0.56026 -0.00022142 0.50014 0.00019766 -0.060121 -2.3761E-05 395.2164674473189 56.252 1.3786 53.076 52.693 54.071 -3.1761 67 38 2 0 0 0 8448 1 10458 10458 8.966 0 1 3935600 33463 10033 22466 22481 32978 32978 0.015415750087413471 PHPAGLTP 8 Unmodified _PHPAGLTP_ 0 0 0 ENST00000457052.2_2_19:46265255-46265294:+|nuORF ENST00000457052.2_2_19:46265255-46265294:+|nuORF ENST00000457052.2_2_19:46265255-46265294:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 395.216321 788.418088 -0.04049 -1.6002E-05 -0.096569 -3.8166E-05 -0.13706 -5.4168E-05 395.21625266434705 53.17 1.3542 53.17 52.608 53.962 0 0.082954 -0.00016568 NaN 8.966 63 37 2 NaN NaN NaN NaN 0 NaN NaN 0 3449000 33464 10033 22466 22481 0.015415750087413471 PHPAGLTP 8 Unmodified _PHPAGLTP_ 0 0 0 ENST00000457052.2_2_19:46265255-46265294:+|nuORF ENST00000457052.2_2_19:46265255-46265294:+|nuORF ENST00000457052.2_2_19:46265255-46265294:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 395.216321 788.418088 -0.36851 -0.00014564 0.27948 0.00011045 -0.089032 -3.5187E-05 395.2164064053754 55.934 1.2709 53.051 52.732 54.003 -2.8837 -0.03669 0.00013156 NaN 8.966 50 36 2 NaN NaN NaN NaN 0 NaN NaN 0 5163900 33465 10033 22466 22481 0.015415750087413471 PHPAGLTP 8 Unmodified _PHPAGLTP_ 0 0 0 ENST00000457052.2_2_19:46265255-46265294:+|nuORF ENST00000457052.2_2_19:46265255-46265294:+|nuORF ENST00000457052.2_2_19:46265255-46265294:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 395.216321 788.418088 0.057692 2.2801E-05 -0.13764 -5.4396E-05 -0.079945 -3.1596E-05 395.21619963539524 56.242 1.3966 53.052 52.601 53.998 -3.1895 -0.035118 -0.00019814 NaN 8.966 72 39 2 NaN NaN NaN NaN 0 NaN NaN 0 4545600 33466 10033 22466 22481 0.015415750087413471 PHPAPPPPP 9 Unmodified _PHPAPPPPP_ 0 0 0 REV__ENSG00000136026|ENST00000378026|CKAP4 REV__ENSG00000136026|ENST00000378026|CKAP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7640686035156 2 453.745245 905.475937 NaN NaN NaN NaN NaN NaN NaN 63.371 1 59.955 59.455 60.455 -3.4158 0 0 0 0.1902 1 11837 11837 7.4771 3.89 1 + 33467 16309 22467 22482 32979 32979 0.019418369341678954 PHPEYIIKPNW 11 Unmodified _PHPEYIIKPNW_ 0 0 0 REV__ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant REV__ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2468566894531 3 465.24695 1392.71902 NaN NaN NaN NaN NaN NaN NaN 128.63 1 128.63 128.13 129.13 0 0 0 0 0.22632 1 25405 25405 3.0723 0 1 + 33468 13145 22468 22483 32980 32980 0.038370368685491485 PHPGAWRV 8 Unmodified _PHPGAWRV_ 0 0 0 SMARCA4|p.P49Afs*33|1|0.24|ENSG00000127616|chr19:10984292-10984293|-/G|frameshift_variant SMARCA4|p.P49Afs*33|1|0.24|ENSG00000127616|chr19:10984292-10984293|-/G|frameshift_variant SMARCA4|p.P49Afs*33|1|0.24|ENSG00000127616|chr19:10984292-10984293|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.248046875 2 460.248486 918.48242 NaN NaN NaN NaN NaN NaN NaN 178.73 1 178.73 178.23 179.23 0 0 0 0 0.21486 1 37021 37021 2.5775 0 1 33469 25697 22469 22484 32981 32981 0.01991774885561881 PHPGAWRV 8 Unmodified _PHPGAWRV_ 0 0 0 SMARCA4|p.P49Afs*33|1|0.24|ENSG00000127616|chr19:10984292-10984293|-/G|frameshift_variant SMARCA4|p.P49Afs*33|1|0.24|ENSG00000127616|chr19:10984292-10984293|-/G|frameshift_variant SMARCA4|p.P49Afs*33|1|0.24|ENSG00000127616|chr19:10984292-10984293|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2484130859375 2 460.248486 918.48242 NaN NaN NaN NaN NaN NaN NaN 178.93 1 178.93 178.43 179.43 0 0 0 0 0.21486 1 37063 37063 2.5775 0 1 33470 25697 22469 22484 32982 32982 0.01991774885561881 PHPLAEGL 8 Unmodified _PHPLAEGL_ 0 0 0 REV__IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant REV__IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 417.2311096191406 2 417.229428 832.444303 NaN NaN NaN NaN NaN NaN NaN 55.832 1 52.949 52.449 53.449 -2.8837 0 0 0 0.21486 1 10691 10691 6.3541 0 1 + 33471 23648 22470 22485 32983 32983 0.021378441802426096 PHPLPVGDQ 9 Unmodified _PHPLPVGDQ_ 0 0 0 REV__ENST00000575164.1_1_16:2903096-2905944:-|nuORF REV__ENST00000575164.1_1_16:2903096-2905944:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25140380859375 2 480.250892 958.48723 0.066765 3.2064E-05 -0.6172 -0.00029641 -0.55043 -0.00026435 480.2508361327229 61.604 0.76929 58.643 58.205 58.974 -2.9614 50 21 3 0 0 0 0.48644 1 11874 11874 20.454 0 1 4897300 + 33472 13848 22471 22486 32984 32984 0.006326142376565258 PHPPLPATE 9 Unmodified _PHPPLPATE_ 0 0 0 ENST00000484668.1_1_3:63973932-63976536:+|nuORF;nc|ENSG00000163635|O15265-3|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7 ENST00000484668.1_1_3:63973932-63976536:+|nuORF ENST00000484668.1_1_3:63973932-63976536:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.1605224609375 3 320.17127 957.491981 NaN NaN NaN NaN NaN NaN NaN 86.463 1 82.734 82.234 83.234 -3.7289 0 0 0 0.23508 1 16534 16534 5.2969 0.96765 1 33473 5450 22472 22487 32985 32985 0.011534983804153853 PHPQAEGAL 9 Unmodified _PHPQAEGAL_ 0 0 0 WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2334899902344 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 72.712 1 72.712 72.212 73.212 0 0 0 0 0.23508 1 14103 14103 7.2892 0.56607 1 33474 26574 22473 22488 32986 32986 -0.006559587964375169 PHPQFSGSV 9 Unmodified _PHPQFSGSV_ 0 0 0 ENST00000428765.1_1_22:42834122-42836568:+|nuORF ENST00000428765.1_1_22:42834122-42836568:+|nuORF ENST00000428765.1_1_22:42834122-42836568:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7369384765625 2 478.235242 954.45593 -0.31833 -0.00015224 0.60677 0.00029018 0.28844 0.00013794 478.23549272885134 93.619 0.53788 93.619 93.292 93.829 0 20 14 2 0 0 0 0.54933 1 18323 18323 22.736 5.794 1 1155800 33475 9756 22474 22489 32987 32987 -0.02311958796417457 PHPQFSGSV 9 Unmodified _PHPQFSGSV_ 0 0 0 ENST00000428765.1_1_22:42834122-42836568:+|nuORF ENST00000428765.1_1_22:42834122-42836568:+|nuORF ENST00000428765.1_1_22:42834122-42836568:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7362365722656 2 478.235242 954.45593 0.042413 2.0283E-05 0.10477 5.0106E-05 0.14718 7.0389E-05 478.23517891422085 97.83 0.9046 93.732 93.186 94.091 -4.0978 44 25 3 0 0 0 0.46796 1 19183 19183 22.736 0 1 3037000 33476 9756 22474 22489 32988 32988 -0.02311958796417457 PHPQFSGSV 9 Unmodified _PHPQFSGSV_ 0 0 0 ENST00000428765.1_1_22:42834122-42836568:+|nuORF ENST00000428765.1_1_22:42834122-42836568:+|nuORF ENST00000428765.1_1_22:42834122-42836568:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7361755371094 2 478.235242 954.45593 0.16214 7.7539E-05 0.0039058 1.8679E-06 0.16604 7.9407E-05 478.23526125131065 97.889 0.89758 93.62 93.089 93.987 -4.2692 42 25 2 0 0 0 0.48437 1 18688 18688 27.629 27.629 1 3150800 33477 9756 22474 22489 32989 32989 -0.02311958796417457 PHPQFSGSV 9 Unmodified _PHPQFSGSV_ 0 0 0 ENST00000428765.1_1_22:42834122-42836568:+|nuORF ENST00000428765.1_1_22:42834122-42836568:+|nuORF ENST00000428765.1_1_22:42834122-42836568:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.235242 954.45593 0.042413 2.0283E-05 0.10477 5.0106E-05 0.14718 7.0389E-05 478.23517891422085 97.83 0.9046 93.732 93.186 94.091 -4.0978 0.088628 -1.0731E-05 NaN 22.736 44 25 3 NaN NaN NaN NaN 0 NaN NaN 0 3037000 33478 9756 22474 22489 -0.02311958796417457 PHPQFSGSV 9 Unmodified _PHPQFSGSV_ 0 0 0 ENST00000428765.1_1_22:42834122-42836568:+|nuORF ENST00000428765.1_1_22:42834122-42836568:+|nuORF ENST00000428765.1_1_22:42834122-42836568:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.235242 954.45593 0.028984 1.3861E-05 -0.11409 -5.4564E-05 -0.085111 -4.0703E-05 478.23519832400746 97.523 0.90379 93.603 93.091 93.994 -3.9194 -0.040483 -0.00022007 NaN 22.736 41 25 2 NaN NaN NaN NaN 0 NaN NaN 0 2544900 33479 9756 22474 22489 -0.02311958796417457 PHPRQAVPP 9 Unmodified _PHPRQAVPP_ 0 0 0 ENST00000469739.6_1_17:18188617-18210429:-|nuORF ENST00000469739.6_1_17:18188617-18210429:-|nuORF ENST00000469739.6_1_17:18188617-18210429:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.01055908203125 3 333.522526 997.545748 -0.27775 -9.2637E-05 0.17115 5.7084E-05 -0.1066 -3.5554E-05 333.5225427825792 19.846 0.79768 18.521 18.214 19.012 -1.3251 58 22 4 0 0 0 0.88211 1 3146 3146 2.9952 0 1 2476400 33480 10186 22475 22490 32990 32990 0.046877156027903766 PHPRQAVPP 9 Unmodified _PHPRQAVPP_ 0 0 0 ENST00000469739.6_1_17:18188617-18210429:-|nuORF ENST00000469739.6_1_17:18188617-18210429:-|nuORF ENST00000469739.6_1_17:18188617-18210429:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 333.522526 997.545748 -0.46614 -0.00015547 -0.064316 -2.1451E-05 -0.53046 -0.00017692 333.52241315471014 18.631 0.9061 18.631 18.23 19.136 0 0.041967 -6.8347E-05 NaN 2.9952 55 25 3 NaN NaN NaN NaN 0 NaN NaN 0 4095600 33481 10186 22475 22490 0.046877156027903766 PHPRQAVPP 9 Unmodified _PHPRQAVPP_ 0 0 0 ENST00000469739.6_1_17:18188617-18210429:-|nuORF ENST00000469739.6_1_17:18188617-18210429:-|nuORF ENST00000469739.6_1_17:18188617-18210429:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 333.522526 997.545748 -0.053245 -1.7758E-05 -0.061757 -2.0597E-05 -0.115 -3.8356E-05 333.5224230330663 20.011 0.8706 18.614 18.276 19.146 -1.3966 0.025759 -6.5786E-05 NaN 2.9952 58 24 3 NaN NaN NaN NaN 0 NaN NaN 0 2978000 33482 10186 22475 22490 0.046877156027903766 PHPTLEEP 8 Unmodified _PHPTLEEP_ 0 0 0 ENST00000479305.5_1_9:126200042-126224279:-|nuORF ENST00000479305.5_1_9:126200042-126224279:-|nuORF ENST00000479305.5_1_9:126200042-126224279:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2294616699219 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 56.202 1 53.026 52.526 53.526 -3.1761 0 0 0 0.18985 1 10452 10452 28.173 5.0248 1 33483 10337 22476 22491 32991 32991 -0.017787808905723068 PHQKQPPP 8 Unmodified _PHQKQPPP_ 0 0 0 REV__ENST00000424310.6_2_5:158636364-158636499:-|nuORF REV__ENST00000424310.6_2_5:158636364-158636499:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16961669921875 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 42.324 1 42.324 41.824 42.824 0 0 0 0 0.21486 1 7915 7915 3.9444 0 1 + 33484 21543 22477 22492 32992 32992 0.026003378201380656 PHQLQQHLR 9 Unmodified _PHQLQQHLR_ 0 0 0 nc|ENSG00000105732|Q6ZN55-2|ZNF574;ENSG00000105732|ENST00000359044|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 nc|ENSG00000105732|Q6ZN55-2|ZNF574 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 386.21734619140625 3 386.215984 1155.62612 NaN NaN NaN NaN NaN NaN NaN 52.606 1 52.606 52.106 53.106 0 0 0 0 0.23508 1 10002 10002 8.1555 2.8586 1 33485 2338 22478 22493 32993 32993 0.054535769258336586 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2387390136719 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 66.472 1 66.472 65.972 66.972 0 0 0 0 0.22636 1 12841 12841 0.25148 0 1 + 33486 23326 22479 22494 32994 32994 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2391052246094 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 67.122 1 67.122 66.622 67.622 0 0 0 0 0.22834 1 12970 12970 0.063987 0 1 + 33487 23326 22479 22494 32995 32995 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.239013671875 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 67.351 1 67.351 66.851 67.851 0 0 0 0 0.22684 1 13019 13019 0.25148 0 1 + 33488 23326 22479 22494 32996 32996 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.239013671875 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 67.381 1 67.381 66.881 67.881 0 0 0 0 0.21452 1 13023 13023 13.508 0.97634 1 + 33489 23326 22479 22494 32997 32997 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2387390136719 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 69.582 1 66.402 65.902 66.902 -3.1796 0 0 0 0.21486 1 13528 13528 10.183 0 1 + 33490 23326 22479 22494 32998 32998 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23944091796875 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 69.801 1 66.621 66.121 67.121 -3.1796 0 0 0 0.22934 1 13575 13575 0.12286 0 1 + 33491 23326 22479 22494 32999 32999 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2389221191406 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 70.483 1 67.234 66.734 67.734 -3.2492 0 0 0 0.2343 1 13717 13717 0.12286 0 1 + 33492 23326 22479 22494 33000 33000 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2389221191406 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 70.498 1 67.249 66.749 67.749 -3.2492 0 0 0 0.2074 1 13719 13719 19.439 0 1 + 33493 23326 22479 22494 33001 33001 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2390441894531 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 73.624 1 70.26 69.76 70.76 -3.3643 0 0 0 0.22636 1 14354 14354 0.68139 0.42991 1 + 33494 23326 22479 22494 33002 33002 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2401123046875 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 73.826 1 70.461 69.961 70.961 -3.3643 0 0 0 0.22636 1 14394 14394 0.68139 0.42991 1 + 33495 23326 22479 22494 33003 33003 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2394104003906 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 74.483 1 71.119 70.619 71.619 -3.3643 0 0 0 0.22636 1 14531 14531 0.25148 0 1 + 33496 23326 22479 22494 33004 33004 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2394104003906 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 72.025 1 68.398 67.898 68.898 -3.6275 0 0 0 0.22692 1 13594 13594 1.4551 1.0755 1 + 33497 23326 22479 22494 33005 33005 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23980712890625 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 56.852 1 53.676 53.176 54.176 -3.1761 0 0 0 0.22699 1 10588 10588 0.25148 0 1 + 33498 23326 22479 22494 33006 33006 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.239013671875 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 70.015 1 66.548 66.048 67.048 -3.467 0 0 0 0.2074 1 13250 13250 19.439 1.304 1 + 33499 23326 22479 22494 33007 33007 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2389221191406 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 70.225 1 66.758 66.258 67.258 -3.467 0 0 0 0.22934 1 13299 13299 0.62683 0 1 + 33500 23326 22479 22494 33008 33008 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2389831542969 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 70.467 1 67 66.5 67.5 -3.467 0 0 0 0.2074 1 13346 13346 19.439 1.304 1 + 33501 23326 22479 22494 33009 33009 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2392883300781 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 70.923 1 67.456 66.956 67.956 -3.467 0 0 0 0.2074 1 13436 13436 19.439 0 1 + 33502 23326 22479 22494 33010 33010 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2310791015625 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 71.022 1 67.555 67.055 68.055 -3.467 0 0 0 0.22684 1 13455 13455 0.25148 0 1 + 33503 23326 22479 22494 33011 33011 0.004668632977086418 PHQPLDRG 8 Unmodified _PHQPLDRG_ 0 0 0 REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF REV__ENST00000590602.5_1_17:76113350-76113936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2390441894531 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 71.357 1 67.89 67.39 68.39 -3.467 0 0 0 0.22834 1 13524 13524 0.25148 0.18749 1 + 33504 23326 22479 22494 33012 33012 0.004668632977086418 PHRCACYM 8 Unmodified _PHRCACYM_ 0 0 0 IGSF10|p.R31H|1|0.1|ENSG00000152580|chr3:151458618-151458618|C/T|missense_variant IGSF10|p.R31H|1|0.1|ENSG00000152580|chr3:151458618-151458618|C/T|missense_variant IGSF10|p.R31H|1|0.1|ENSG00000152580|chr3:151458618-151458618|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 328.02471923828125 3 327.468159 979.382647 -0.63284 -0.00020723 -0.89245 -0.00029225 -1.5253 -0.00049948 327.46781359241544 57.443 0.71692 54.267 53.858 54.575 -3.1761 42 19 3 0 0 0 1.0268 1 10635 10635 1.8442 0.6509 1 1909400 33505 11938 22480 22495 33013 33013 -0.10786870106574042 PHRCACYM 8 Unmodified _PHRCACYM_ 0 0 0 IGSF10|p.R31H|1|0.1|ENSG00000152580|chr3:151458618-151458618|C/T|missense_variant IGSF10|p.R31H|1|0.1|ENSG00000152580|chr3:151458618-151458618|C/T|missense_variant IGSF10|p.R31H|1|0.1|ENSG00000152580|chr3:151458618-151458618|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 327.468159 979.382647 -0.48946 -0.00016028 -1.0462 -0.00034259 -1.5357 -0.00050288 327.46776305225495 54.168 0.71081 54.168 53.744 54.455 0 -0.0004361 0.00016497 NaN 1.8442 35 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1759100 33506 11938 22480 22495 -0.10786870106574042 PHRCACYM 8 Unmodified _PHRCACYM_ 0 0 0 IGSF10|p.R31H|1|0.1|ENSG00000152580|chr3:151458618-151458618|C/T|missense_variant IGSF10|p.R31H|1|0.1|ENSG00000152580|chr3:151458618-151458618|C/T|missense_variant IGSF10|p.R31H|1|0.1|ENSG00000152580|chr3:151458618-151458618|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 327.468159 979.382647 -0.40566 -0.00013284 -1.0847 -0.00035521 -1.4904 -0.00048805 327.46775791884056 57.033 0.73224 54.138 53.786 54.519 -2.8944 -0.029809 0.00012711 NaN 1.8442 44 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3081400 33507 11938 22480 22495 -0.10786870106574042 PHRCACYM 8 Unmodified _PHRCACYM_ 0 0 0 IGSF10|p.R31H|1|0.1|ENSG00000152580|chr3:151458618-151458618|C/T|missense_variant IGSF10|p.R31H|1|0.1|ENSG00000152580|chr3:151458618-151458618|C/T|missense_variant IGSF10|p.R31H|1|0.1|ENSG00000152580|chr3:151458618-151458618|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 327.468159 979.382647 0.076301 2.4986E-05 -1.7887 -0.00058574 -1.7124 -0.00056076 327.46752954403166 57.351 0.62967 54.1 53.765 54.395 -3.2517 -0.06845 -0.00056448 NaN 1.8442 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2603300 33508 11938 22480 22495 -0.10786870106574042 PHRGVLLRF 9 Unmodified _PHRGVLLRF_ 0 0 0 KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7835693359375 2 547.832717 1093.65088 NaN NaN NaN NaN NaN NaN NaN 163.13 1 157.94 157.44 158.44 -5.1878 0 0 0 0.19656 1 31724 31724 0.12781 0 1 33509 12012 22481 22496 33014 33014 0.10780256799216659 PHRLRLAG 8 Unmodified _PHRLRLAG_ 0 0 0 REV__ENSG00000159263|ENST00000290399|SIM2 REV__ENSG00000159263|ENST00000290399|SIM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22723388671875 2 460.28286 918.551168 NaN NaN NaN NaN NaN NaN NaN 77.817 1 74.353 73.853 74.853 -3.4633 0 0 0 0.21486 1 15194 15194 2.8892 0.31174 1 + 33510 17366 22482 22497 33015 33015 0.08863439185267907 PHRNIPYPIP 10 Unmodified _PHRNIPYPIP_ 0 0 0 ENST00000605862.4_1_7:128214806-128231910:+|nuORF;ENST00000479267.2_3_7:128218036-128231910:+|nuORF ENST00000605862.4_1_7:128214806-128231910:+|nuORF ENST00000605862.4_1_7:128214806-128231910:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2990112304688 2 602.33529 1202.65603 NaN NaN NaN NaN NaN NaN NaN 127.69 0.99999 127.69 127.19 128.19 0 0 0 0 0.22588 1 25207 25207 7.2892 0 1 33511 10336 22483 22498 33016 33016 0.06280515871162606 PHRPQSGH 8 Unmodified _PHRPQSGH_ 0 0 0 ENST00000478313.1_1_21:37898783-37915072:-|nuORF ENST00000478313.1_1_21:37898783-37915072:-|nuORF ENST00000478313.1_1_21:37898783-37915072:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2304382324219 2 458.230825 914.447097 NaN NaN NaN NaN NaN NaN NaN 168.06 1 163.11 162.61 163.61 -4.948 0 0 0 0.23366 1 33111 33111 0.12286 0.049601 1 33512 10316 22484 22499 33017 33017 -0.013548876422419198 PHRPQSGH 8 Unmodified _PHRPQSGH_ 0 0 0 ENST00000478313.1_1_21:37898783-37915072:-|nuORF ENST00000478313.1_1_21:37898783-37915072:-|nuORF ENST00000478313.1_1_21:37898783-37915072:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2304382324219 2 458.230825 914.447097 NaN NaN NaN NaN NaN NaN NaN 168.07 1 163.12 162.62 163.62 -4.948 0 0 0 0.21486 1 33114 33114 5.7604 0 1 33513 10316 22484 22499 33018 33018 -0.013548876422419198 PHRRKQII 8 Unmodified _PHRRKQII_ 0 0 0 ENST00000469927.5_1_3:21603533-21606176:-|nuORF;ZNF385D|p.T146Qfs*24|1|0.17|ENSG00000151789|chr3:21510864-21510864|T/-|frameshift_variant;ENSG00000151789|ENST00000281523|ZNF385D ENST00000469927.5_1_3:21603533-21606176:-|nuORF ENST00000469927.5_1_3:21603533-21606176:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.53216552734375 3 349.88932 1046.64613 0.064137 2.2441E-05 -0.18116 -6.3387E-05 -0.11703 -4.0947E-05 349.8892562393348 25.326 1.1766 23.792 22.85 24.027 -1.5342 52 33 2 0 0 0 0.89848 1 3996 3996 0.0082765 0 1 1500400 33514 4888 22485 22500 33019 33019 0.12467372656465159 PHRRRLAV 8 Unmodified _PHRRRLAV_ 0 0 0 REV__ENSG00000135722|ENST00000258200|FBXL8 REV__ENSG00000135722|ENST00000258200|FBXL8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 502.8155822753906 2 502.814859 1003.61517 NaN NaN NaN NaN NaN NaN NaN 171.43 1 166.55 166.05 167.05 -4.873 0 0 0 0.23711 1 33974 33974 0.0082765 0 1 + 33515 16284 22486 22501 33020 33020 0.11350219342227774 PHRTASMPP 9 Unmodified _PHRTASMPP_ 0 0 0 ENST00000465160.2_1_9:140287076-140287355:-|nuORF ENST00000465160.2_1_9:140287076-140287355:-|nuORF ENST00000465160.2_1_9:140287076-140287355:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.00579833984375 3 331.836005 992.486184 0.0062525 2.0748E-06 0.6543 0.00021712 0.66055 0.00021919 331.8362032306054 39.948 0.42169 37.408 37.218 37.64 -2.5398 20 11 2 0 0 0 0.884 1 7167 7167 1.1933 0 1 602870 33516 10117 22487 22502 33021 33021 -0.010359234028896935 PHSALPSPYL 10 Unmodified _PHSALPSPYL_ 0 0 0 REV__NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant REV__NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2733154296875 2 541.287474 1080.5604 0.43332 0.00023455 0.094831 5.1331E-05 0.52816 0.00028588 541.2873005840137 149.78 0.78986 144.65 144.32 145.11 -5.1204 30 21 2 0 0 0 0.59928 1 28983 28983 19.257 2.1441 1 3657900 + 33517 24394 22488 22503 33022 33022 0.023337429602634074 PHSDTVEFY 9 Unmodified _PHSDTVEFY_ 0 0 0 ENSG00000088038|ENST00000221232|CNOT3 ENSG00000088038|ENST00000221232|CNOT3 ENSG00000088038|ENST00000221232|CNOT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7882690429688 2 547.743096 1093.47164 0.3613 0.0001979 0.053332 2.9212E-05 0.41463 0.00022711 547.742984849967 85.111 1.8329 85.111 84.277 86.11 0 125 51 3 0 0 0 0.41781 1 16785 16785 24.674 2.0158 1 6823200 33518 1724 22489 22504 33023 33023 -0.07135717070036662 PHSDVYGV 8 Unmodified _PHSDVYGV_ 0 0 0 REV__MR1|p.S46L|3|0.31|ENSG00000153029|chr1:181049121-181049121|C/T|missense_variant REV__MR1|p.S46L|3|0.31|ENSG00000153029|chr1:181049121-181049121|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21734619140625 2 437.208692 872.402832 0.18707 8.179E-05 -0.38978 -0.00017041 -0.2027 -8.8624E-05 437.2084039250174 73.361 0.49437 73.361 73.133 73.628 0 16 13 2 0 0 0 0.98792 1 14222 14222 14.582 5.9884 1 787010 + 33519 17131 22490 22505 33024 33024 -0.03847336579087823 PHSFPRTV 8 Unmodified _PHSFPRTV_ 0 0 0 ENST00000483541.1_1_10:123719867-123724812:-|nuORF;ENSG00000107672|ENST00000369023|NSMCE4A ENST00000483541.1_1_10:123719867-123724812:-|nuORF ENST00000483541.1_1_10:123719867-123724812:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1720275878906 3 314.171493 939.49265 NaN NaN NaN NaN NaN NaN NaN 56.77 1 53.581 53.081 54.081 -3.1895 0 0 0 0.21486 1 10530 10530 1.8442 0 1 33520 2435 22491 22506 33025 33025 0.020483378201447522 PHSHDYLPQ 9 Unmodified _PHSHDYLPQ_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113242781-113243126:+|nuORF;MOV10|p.R985Q|1|0.2|ENSG00000155363|chr1:112700449-112700449|G/A|missense_variant ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7896118164062 2 547.256705 1092.49886 0.36203 0.00019812 -3.0054 -0.0016447 -2.6434 -0.0014466 547.7561174106078 159.06 0.21176 154.26 154.08 154.3 -4.7952 7 5 2 0 0 0 0.74257 1 31622 31622 4.3292 0.13973 1 658220 33521 5044 22492 22507 33026 33026 -0.04369188738996854 PHSHHLLC 8 Unmodified _PHSHHLLC_ 0 0 0 ENST00000472800.1_1_2:74756265-74756756:-|nuORF ENST00000472800.1_1_2:74756265-74756756:-|nuORF ENST00000472800.1_1_2:74756265-74756756:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.0396423339844 3 315.157078 942.449405 NaN NaN NaN NaN NaN NaN NaN 53.273 1 53.273 52.773 53.773 0 0 0 0 0.21486 1 10141 10141 1.8442 0 1 33522 10231 22493 22508 33027 33027 -0.02412175228801061 PHSKKRTLK 9 Unmodified _PHSKKRTLK_ 0 0 0 ENSG00000114857|ENST00000232978|NKTR ENSG00000114857|ENST00000232978|NKTR ENSG00000114857|ENST00000232978|NKTR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7728271484375 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 93.106 1 88.962 88.462 89.462 -4.1435 0 0 0 0.19634 1 17744 17744 0.0033805 0 1 33523 2814 22494 22509 33028 33028 0.12892222108075657 PHSPAPPF 8 Unmodified _PHSPAPPF_ 0 0 0 ENST00000514463.1_1_3:126160334-126160817:-|nuORF ENST00000514463.1_1_3:126160334-126160817:-|nuORF ENST00000514463.1_1_3:126160334-126160817:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2439880371094 2 425.216321 848.418088 NaN NaN NaN NaN NaN NaN NaN 91.2 1 91.2 90.7 91.7 0 0 0 0 0.23366 1 17820 17820 0.25148 0 1 33524 10774 22495 22510 33029 33029 -0.012184249912479572 PHTAELNH 8 Unmodified _PHTAELNH_ 0 0 0 ENSG00000226650|ENST00000435029|KIF4B ENSG00000226650|ENST00000435029|KIF4B ENSG00000226650|ENST00000435029|KIF4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2445983886719 2 459.725041 917.435529 0.34362 0.00015797 -1.3937 -0.00064074 -1.0501 -0.00048276 459.72444463586214 89.451 0.74639 85.406 85.101 85.847 -4.0443 25 20 2 0 0 0 1.0243 1 16992 16992 5.7604 3.1829 1 1378000 33525 7792 22496 22511 33030 33030 -0.026491294562333678 PHVGVKDVE 9 Unmodified _PHVGVKDVE_ 0 0 0 nc|ENSG00000030582|P28799-3|GRN;ENSG00000030582|ENST00000053867|GRN nc|ENSG00000030582|P28799-3|GRN nc|ENSG00000030582|P28799-3|GRN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26397705078125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.7 1 170.91 170.41 171.41 -4.7898 0 0 0 0.19684 1 35925 35925 0.12781 0.06395 1 33526 1156 22497 22512 33031 33031 0.023328834091330464 PHVGVKDVE 9 Unmodified _PHVGVKDVE_ 0 0 0 nc|ENSG00000030582|P28799-3|GRN;ENSG00000030582|ENST00000053867|GRN nc|ENSG00000030582|P28799-3|GRN nc|ENSG00000030582|P28799-3|GRN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26513671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.94 1 171.15 170.65 171.65 -4.7898 0 0 0 0.23508 1 35973 35973 4.3292 0.38484 1 33527 1156 22497 22512 33032 33032 0.023328834091330464 PHVGVKDVE 9 Unmodified _PHVGVKDVE_ 0 0 0 nc|ENSG00000030582|P28799-3|GRN;ENSG00000030582|ENST00000053867|GRN nc|ENSG00000030582|P28799-3|GRN nc|ENSG00000030582|P28799-3|GRN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2646179199219 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 176.23 1 171.45 170.95 171.95 -4.7898 0 0 0 0.23508 1 36035 36035 4.3292 0.38484 1 33528 1156 22497 22512 33033 33033 0.023328834091330464 PHVISSDQI 9 Unmodified _PHVISSDQI_ 0 0 0 ENSG00000119698|ENST00000304338|PPP4R4 ENSG00000119698|ENST00000304338|PPP4R4 ENSG00000119698|ENST00000304338|PPP4R4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.01055908203125 3 332.510063 994.50836 -0.24573 -8.1707E-05 0.064 2.1281E-05 -0.18173 -6.0426E-05 332.5100633823951 20.416 0.46011 19.031 18.811 19.271 -1.3847 28 12 3 0 0 0 0.88211 1 3146 3146 2.9952 0 1 13537000 33529 3094 22498 22513 33034 33034 0.010885795465128467 PHVISSDQI 9 Unmodified _PHVISSDQI_ 0 0 0 ENSG00000119698|ENST00000304338|PPP4R4 ENSG00000119698|ENST00000304338|PPP4R4 ENSG00000119698|ENST00000304338|PPP4R4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 332.510063 994.50836 0.032992 1.097E-05 -0.16115 -5.3583E-05 -0.12815 -4.2613E-05 332.5099622524604 20.556 0.38675 19.16 18.896 19.283 -1.3966 0.078555 -0.00032722 NaN 2.9952 30 10 4 NaN NaN NaN NaN 0 NaN NaN 0 13341000 33530 3094 22498 22513 0.010885795465128467 PHVPPAGP 8 Unmodified _PHVPPAGP_ 0 0 0 REV__ENST00000524499.1_1_8:145133430-145133799:-|nuORF REV__ENST00000524499.1_1_8:145133430-145133799:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 386.2107238769531 2 386.211038 770.407523 NaN NaN NaN NaN NaN NaN NaN 52.828 1 52.828 52.328 53.328 0 0 0 0 0.21486 1 10046 10046 11.114 0 1 + 33531 22671 22499 22514 33035 33035 0.013135923543245553 PHVPRYHLQP 10 Unmodified _PHVPRYHLQP_ 0 0 0 nc|ENSG00000213471|A6NNM8|TTLL13;ENST00000561573.1_1_15:90806992-90815017:+|nuORF nc|ENSG00000213471|A6NNM8|TTLL13;ENST00000561573.1_1_15:90806992-90815017:+|nuORF ENST00000561573.1_1_15:90806992-90815017:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7805786132812 2 622.338364 1242.66217 NaN NaN NaN NaN NaN NaN NaN 169.85 1 164.98 164.48 165.48 -4.873 0 0 0 0.22588 1 33578 33578 13.042 2.243 1 33532 12590;11304 22500 22515 33036 33036 0.050550341027019385 PHVRLRCV 8 Unmodified _PHVRLRCV_ 0 0 0 REV__ENST00000532094.5_1_11:420655-431830:-|nuORF REV__ENST00000532094.5_1_11:420655-431830:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2654724121094 2 490.284546 978.554539 NaN NaN NaN NaN NaN NaN NaN 73.295 1 69.756 69.256 70.256 -3.5385 0 0 0 0.21486 1 13910 13910 9.3474 0 1 + 33533 22783 22501 22516 33037 33037 0.06440365967625894 PHVRLRCV 8 Unmodified _PHVRLRCV_ 0 0 0 REV__ENST00000532094.5_1_11:420655-431830:-|nuORF REV__ENST00000532094.5_1_11:420655-431830:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2550354003906 2 490.284546 978.554539 NaN NaN NaN NaN NaN NaN NaN 77.831 1 74.172 73.672 74.672 -3.6588 0 0 0 0.21486 1 14824 14824 10.183 1.5901 1 + 33534 22783 22501 22516 33038 33038 0.06440365967625894 PHVRRRRKAHR 11 Unmodified _PHVRRRRKAHR_ 0 0 0 ENST00000311481.10_1_11:66044423-66044729:+|nuORF ENST00000311481.10_1_11:66044423-66044729:+|nuORF ENST00000311481.10_1_11:66044423-66044729:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2636413574219 3 490.303009 1467.8872 NaN NaN NaN NaN NaN NaN NaN 175.9 1 170.99 170.49 171.49 -4.9008 0 0 0 0.22632 1 35062 35062 0.00056442 0 1 33535 8652 22502 22517 33039 33039 0.17197001416252533 PHVVVGTP 8 Unmodified _PHVVVGTP_ 0 0 0 ENST00000589318.5_1_19:14520811-14524032:-|nuORF;ENST00000590556.1_1_19:14521762-14522332:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A ENST00000589318.5_1_19:14520811-14524032:-|nuORF ENST00000589318.5_1_19:14520811-14524032:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 403.23699951171875 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 52.729 1 52.729 52.229 53.229 0 0 0 0 0.21486 1 10026 10026 2.8892 0 1 33536 11587 22503 22518 33040 33040 0.03934148042867491 PHWDWECPSSL 11 Unmodified _PHWDWECPSSL_ 0 0 0 REV__ENST00000377259.5_2_9:71766567-71833305:+|nuORF REV__ENST00000377259.5_2_9:71766567-71833305:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 452.87078857421875 3 452.860767 1355.56047 NaN NaN NaN NaN NaN NaN NaN 11.695 1 10.791 10.291 11.291 -0.90401 0 0 0 0.22632 1 1568 1568 0.026206 0 1 + 33537 21092 22504 22519 33041 33041 -0.10308625102015867 PHWWDFLR 8 Unmodified _PHWWDFLR_ 0 0 0 REV__nc|ENSG00000224831|Q1AE95|TMEM183BP REV__nc|ENSG00000224831|Q1AE95|TMEM183BP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 386.19561767578125 3 386.194409 1155.5614 NaN NaN NaN NaN NaN NaN NaN 55.309 1 52.425 51.925 52.925 -2.8837 0 0 0 0.21486 1 10581 10581 10.824 2.6684 1 + 33538 17570 22505 22520 33042 33042 -0.010159978801766556 PHWWRTYREYF 11 Unmodified _PHWWRTYREYF_ 0 0 0 ENSG00000204316|ENST00000309352|MRPL38;ENST00000410030.1_1_17:73900359-73901082:-|nuORF;ENST00000464758.1_1_17:73900462-73900977:-|nuORF;ENST00000493383.5_1_17:73897833-73900929:-|nuORF;ENST00000477736.5_1_17:73897061-73900795:-|nuORF;ENST00000493104.5_1_17:73897660-73900929:-|nuORF ENSG00000204316|ENST00000309352|MRPL38 ENSG00000204316|ENST00000309352|MRPL38 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7689819335938 3 547.596753 1639.76843 0.33213 0.00018187 -2.4459 -0.0013394 -2.1138 -0.0011575 548.2628013817884 144.36 0.33664 144.36 144.17 144.51 0 17 9 3 0 0 0 0.96224 1 28851 28851 0.50596 0.051438 1 3993500 33539 7571 22506 22521 33043 33043 -0.025862551226509822 PHYIAHRKG 9 Unmodified _PHYIAHRKG_ 0 0 0 ENST00000414932.1_1_7:43908445-43909104:-|nuORF;ENSG00000062582|ENST00000317534|MRPS24 ENST00000414932.1_1_7:43908445-43909104:-|nuORF ENST00000414932.1_1_7:43908445-43909104:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 85.851 1 85.851 85.351 86.351 0 0 0 0 0.23508 1 16756 16756 1.0715 0 1 33540 1323 22507 22522 33044 33044 0.047508068684237514 PHYIAHRKG 9 Unmodified _PHYIAHRKG_ 0 0 0 ENST00000414932.1_1_7:43908445-43909104:-|nuORF;ENSG00000062582|ENST00000317534|MRPS24 ENST00000414932.1_1_7:43908445-43909104:-|nuORF ENST00000414932.1_1_7:43908445-43909104:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2018127441406 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 97.2 1 97.2 96.7 97.7 0 0 0 0 0.23508 1 19047 19047 2.4985 0 1 33541 1323 22507 22522 33045 33045 0.047508068684237514 PHYIAHRKG 9 Unmodified _PHYIAHRKG_ 0 0 0 ENST00000414932.1_1_7:43908445-43909104:-|nuORF;ENSG00000062582|ENST00000317534|MRPS24 ENST00000414932.1_1_7:43908445-43909104:-|nuORF ENST00000414932.1_1_7:43908445-43909104:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20147705078125 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 72.875 1 69.248 68.748 69.748 -3.6275 0 0 0 0.23508 1 13768 13768 2.7352 0 1 33542 1323 22507 22522 33046 33046 0.047508068684237514 PHYIAHRKG 9 Unmodified _PHYIAHRKG_ 0 0 0 ENST00000414932.1_1_7:43908445-43909104:-|nuORF;ENSG00000062582|ENST00000317534|MRPS24 ENST00000414932.1_1_7:43908445-43909104:-|nuORF ENST00000414932.1_1_7:43908445-43909104:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 81.489 1 77.801 77.301 78.301 -3.6879 0 0 0 0.23508 1 15529 15529 2.7352 0 1 33543 1323 22507 22522 33047 33047 0.047508068684237514 PHYLCAIY 8 Unmodified _PHYLCAIY_ 0 0 0 REV__ENSG00000147183|ENST00000276127|CPXCR1 REV__ENSG00000147183|ENST00000276127|CPXCR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2568664550781 2 490.238938 978.463324 0.1216 5.9612E-05 0.47992 0.00023527 0.60152 0.00029489 490.23926545582333 72.365 0.58559 68.827 68.501 69.087 -3.5385 20 16 2 0 0 0 0.7545 1 13766 13766 6.3541 1.1234 1 936910 + 33544 16925 22508 22523 33048 33048 -0.026769425203724495 PIALIIRKLKK 11 Unmodified _PIALIIRKLKK_ 0 0 0 REV__nc|ENSG00000100461|Q86U06-5|RBM23 REV__nc|ENSG00000100461|Q86U06-5|RBM23 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 646.8637084960938 2 646.960658 1291.90676 NaN NaN NaN NaN NaN NaN NaN 168.74 1 168.74 168.24 169.24 0 0 0 0 0.23698 1 34587 34587 0.30703 0.03801 1 + 33545 23969 22509 22524 33049 33049 0.27248519863769616 PIAVLLLLVM 10 Unmodified _PIAVLLLLVM_ 0 0 0 REV__ENSG00000186897|ENST00000334221|C1QL4 REV__ENSG00000186897|ENST00000334221|C1QL4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2703247070312 2 541.356314 1080.69807 0.21627 0.00011708 2.0382 0.0011034 2.2545 0.0012205 541.8585743523813 134.9 0.17618 130.26 130.2 130.38 -4.6399 6 4 2 0 0 0 0.91149 1 26615 26615 1.8442 0.36234 1 1913500 + 33546 19062 22510 22525 33050 33050 0.16095355235347597 PIDCTPPEYIL 11 Unmodified _PIDCTPPEYIL_ 0 0 0 CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant;CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;CLUH|p.Q326Pfs*22|1|0.17|ENSG00000132361|chr17:2700760-2700761|-/G|frameshift_variant;CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.77880859375 2 630.812664 1259.61078 NaN NaN NaN NaN NaN NaN NaN 164.68 1 159.89 159.39 160.39 -4.7898 0 0 0 0.23324 1 32926 32926 5.7319 1.7875 1 33547 589 22511 22526 33051 33051 -0.008645154968917268 PIDKPVTALQ 10 Unmodified _PIDKPVTALQ_ 0 0 0 REV__nc|ENSG00000127603|O94854|MACF1 REV__nc|ENSG00000127603|O94854|MACF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2816772460938 2 541.316232 1080.61791 NaN NaN NaN NaN NaN NaN NaN 159.63 1 154.84 154.34 155.34 -4.7952 0 0 0 0.22588 1 31739 31739 10.8 0 1 + 33548 24029 22512 22527 33052 33052 0.08082585165857381 PIDLLRRDP 9 Unmodified _PIDLLRRDP_ 0 0 0 FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant;FRMPD4|p.S1105Vfs*3|1|0.29|ENSG00000169933|chrX:12718134-12718134|A/-|frameshift_variant;FRMPD4|p.L1210Pfs*39|1|0.05|ENSG00000169933|chrX:12718454-12718455|-/CT|frameshift_variant;nc|ENSG00000169933|Q14CM0|FRMPD4;ENSG00000169933|ENST00000675598|FRMPD4;FRMPD4|p.C618Vfs*8|1|0.19|ENSG00000169933|chrX:12716306-12716306|C/-|frameshift_variant;FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7858276367188 2 547.819473 1093.62439 NaN NaN NaN NaN NaN NaN NaN 149.56 1 144.36 143.86 144.86 -5.1994 0 0 0 0.23508 1 28972 28972 6.7232 0 1 33549 6023 22513 22528 33053 33053 0.0813252311722863 PIDSLPKKPKG 11 Unmodified _PIDSLPKKPKG_ 0 0 0 RBM19|p.T439P|1|0.16|ENSG00000122965|chr12:113947426-113947426|T/G|missense_variant RBM19|p.T439P|1|0.16|ENSG00000122965|chr12:113947426-113947426|T/G|missense_variant RBM19|p.T439P|1|0.16|ENSG00000122965|chr12:113947426-113947426|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.4976196289062 2 590.358431 1178.70231 NaN NaN NaN NaN NaN NaN NaN 167.19 1 162.24 161.74 162.74 -4.948 0 0 0 0.22943 1 32860 32860 8.7454 3.0136 1 33550 12870 22514 22529 33054 33054 0.1201053598258568 PIEFLLPKL 9 Unmodified _PIEFLLPKL_ 0 0 0 REV__ENST00000484115.5_1_3:49028265-49040202:+|nuORF REV__ENST00000484115.5_1_3:49028265-49040202:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5596618652344 3 357.226716 1068.65832 -0.20186 -7.2109E-05 1.1952 0.00042695 0.99333 0.00035484 357.56199176585244 25.499 0.48586 25.499 25.358 25.843 0 20 13 2 0 0 0 0.30618 2 4467 4440;4467 31.268 10.854 1 7455900 + 33551 18607 22515 22530 33055;33056 33056 0.12673551556281382 PIERRYTM 8 Unmodified _PIERRYTM_ 0 0 0 REV__ENST00000382303.5_1_9:710908-710947:+|nuORF REV__ENST00000382303.5_1_9:710908-710947:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.281005859375 2 533.279126 1064.5437 NaN NaN NaN NaN NaN NaN NaN 169.19 1 164.26 163.76 164.76 -4.9295 0 0 0 0.21486 1 33391 33391 10.183 0.83596 1 + 33552 21178 22516 22531 33057 33057 0.014009188026875563 PIEVRGPPP 9 Unmodified _PIEVRGPPP_ 0 0 0 ENST00000566802.5_1_16:74366359-74378726:-|nuORF ENST00000566802.5_1_16:74366359-74378726:-|nuORF ENST00000566802.5_1_16:74366359-74378726:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7780456542969 2 481.276909 960.539266 0.093983 4.5232E-05 0.02894 1.3928E-05 0.12292 5.916E-05 481.27692959380755 60.579 1.8293 57.355 56.533 58.362 -3.2237 85 51 2 0 0 0 0.6329 1 11289 11289 10.824 0 1 1364400 33553 11372 22517 22532 33058 33058 0.057417776514284924 PIGCVTGK 8 Unmodified _PIGCVTGK_ 0 0 0 REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|155|3|sense REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|155|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.712646484375 2 387.712556 773.41056 -0.067112 -2.602E-05 0.40807 0.00015821 0.34095 0.00013219 387.7126218295148 30.237 0.80643 30.237 29.919 30.725 0 47 22 3 0 0 0 8448 1 5477 5477 3.2813 0 1 4281500 + 33554 23613 22518 22533 33059 33059 0.014790994168379257 PIGVILLAKR 10 Unmodified _PIGVILLAKR_ 0 0 0 REV__ENSG00000198883|ENST00000535214|PNMA5 REV__ENSG00000198883|ENST00000535214|PNMA5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.91998291015625 3 360.581493 1078.72265 -0.6422 -0.00023157 0.55158 0.00019889 -0.09062 -3.2676E-05 360.58168359158606 93.947 1.3459 90.103 89.572 90.918 -3.844 134 38 5 0 0 0 0.25854 1 17997 17997 19.362 2.249 1 114790000 + 33555 19473 22519 22534 33060 33060 0.18643751433046418 PIGVPIIII 9 Unmodified _PIGVPIIII_ 0 0 0 REV__tr|U7STX9|U7STX9_FUSNUProbablenicotinate-nucleotideadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadDPE=3SV=1 REV__tr|U7STX9|U7STX9_FUSNUProbablenicotinate-nucleotideadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadDPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.21697998046875 3 312.21604 933.62629 NaN NaN NaN NaN NaN NaN NaN 56.306 1 56.306 55.806 56.806 0 0 0 0 0.23508 1 10751 10751 0.26902 0 1 + 33556 25128 22520 22535 33061 33061 0.1568218387315028 PIIKPLIPKPK 11 Unmodified _PIIKPLIPKPK_ 0 0 0 ENSG00000198554|ENST00000360586|WDHD1;nc|ENSG00000198554|O75717-2|WDHD1 ENSG00000198554|ENST00000360586|WDHD1 ENSG00000198554|ENST00000360586|WDHD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.758056640625 2 622.428659 1242.84277 NaN NaN NaN NaN NaN NaN NaN 67.799 1 64.472 63.972 64.972 -3.3268 0 0 0 0.22632 1 12789 12789 0 0 1 33557 7459 22521 22536 33062 33062 0.2310573970680707 PIKAITVKQP 10 Unmodified _PIKAITVKQP_ 0 0 0 REV__ENSG00000139726|ENST00000280557|DENR REV__ENSG00000139726|ENST00000280557|DENR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7800903320312 2 547.850242 1093.68593 NaN NaN NaN NaN NaN NaN NaN 165.66 1 160.71 160.21 161.21 -4.9484 0 0 0 0.22588 1 32386 32386 6.7232 0.51738 1 + 33558 16541 22522 22537 33063 33063 0.14283454816495578 PIKIRIVLVQ 10 Unmodified _PIKIRIVLVQ_ 0 0 0 REV__ENST00000560591.5_1_15:67835673-67951132:+|nuORF REV__ENST00000560591.5_1_15:67835673-67951132:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2603149414062 2 589.902808 1177.79106 NaN NaN NaN NaN NaN NaN NaN 68.129 1 65.02 64.52 65.52 -3.1086 0 0 0 2.8426 1 13226 13226 0.13989 0.13933 1 + 33559 16406 22523 22538 33064 33064 0.20927996012915173 PIKIRIVLVQ 10 Unmodified _PIKIRIVLVQ_ 0 0 0 REV__ENST00000560591.5_1_15:67835673-67951132:+|nuORF REV__ENST00000560591.5_1_15:67835673-67951132:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2490844726562 2 589.902808 1177.79106 NaN NaN NaN NaN NaN NaN NaN 68.615 1 65.079 64.579 65.579 -3.5362 0 0 0 0.22588 1 12899 12899 1.6526 0.32309 1 + 33560 16406 22523 22538 33065 33065 0.20927996012915173 PIKKLKKLL 9 Unmodified _PIKKLKKLL_ 0 0 0 REV__tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 REV__tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2743530273438 2 540.896995 1079.77944 0.14475 7.8294E-05 2.3588 0.0012759 2.5035 0.0013542 541.3988555399533 137.61 0.10355 132.69 132.62 132.72 -4.9215 4 2 2 0 0 0 0.65513 1 26444 26444 0.20686 0 1 820900 + 33561 25102 22524 22539 33066 33066 0.2427379898961135 PIKKPKRRL 9 Unmodified _PIKKPKRRL_ 0 0 0 RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 568.6484375 2 568.392942 1134.77133 0.18154 0.00010319 -2.7693 -0.001574 -2.5877 -0.0014708 568.8913085566065 172.94 0.13676 168.04 167.95 168.09 -4.8977 5 3 2 0 0 0 0.65202 1 34304 34304 0.96228 0 1 1316700 33562 12868 22525 22540 33067 33067 0.20933664792823947 PIKKPKRRLRR 11 Unmodified _PIKKPKRRLRR_ 0 0 0 RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 724.3084106445312 2 724.494053 1446.97355 NaN NaN NaN NaN NaN NaN NaN 168.3 1 163.35 162.85 163.85 -4.948 0 0 0 0.22632 1 33172 33172 0 0 1 33563 12868 22526 22541 33068 33068 0.2679456819821553 PIKRIRRKL 9 Unmodified _PIKRIRRKL_ 0 0 0 REV__ENSG00000119616|ENST00000341162|FCF1 REV__ENSG00000119616|ENST00000341162|FCF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.271728515625 2 590.411666 1178.80878 NaN NaN NaN NaN NaN NaN NaN 164.63 1 159.58 159.08 160.08 -5.0446 0 0 0 0.23508 1 32121 32121 2.0598 0 1 + 33564 15587 22527 22542 33069 33069 0.22652756058437262 PIKYKCIK 8 Unmodified _PIKYKCIK_ 0 0 0 REV__ENST00000520653.1_1_8:99607897-99614421:-|nuORF REV__ENST00000520653.1_1_8:99607897-99614421:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.0098876953125 3 331.536896 991.588859 0.1779 5.898E-05 -0.12608 -4.1799E-05 0.051825 1.7182E-05 331.53682261827913 127.99 0.66022 123.17 122.71 123.37 -4.817 27 18 2 0 0 0 1.0278 1 24548 24548 1.4819 0 1 1978400 + 33565 22638 22528 22543 33070 33070 0.09272769335859721 PILKRLKAF 9 Unmodified _PILKRLKAF_ 0 0 0 REV__ENSG00000186051|ENST00000334077|TAL2 REV__ENSG00000186051|ENST00000334077|TAL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7809448242188 2 543.363319 1084.71209 0.33963 0.00018454 -1.5553 -0.00084508 -1.2157 -0.00066054 543.8655250196284 147.35 0.1066 147.35 147.29 147.4 0 4 2 2 0 0 0 0.79297 1 29461 29461 2.0598 0 1 2420700 + 33566 19007 22529 22544 33071 33071 0.1731176877863163 PILKVKGP 8 Unmodified _PILKVKGP_ 0 0 0 REV__ENSG00000187833|ENST00000409561|C2orf78 REV__ENSG00000187833|ENST00000409561|C2orf78 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.2908630371094 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 43.083 1 40.432 39.932 40.932 -2.651 0 0 0 0.21486 1 7770 7770 2.8892 2.0956 1 + 33567 19113 22530 22545 33072 33072 0.13276457524807483 PILLLKRY 8 Unmodified _PILLLKRY_ 0 0 0 REV__ENSG00000173769|ENST00000309765|TOPAZ1 REV__ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.79083251953125 3 339.226939 1014.65899 -0.319 -0.00010821 0.19979 6.7776E-05 -0.1192 -4.0436E-05 339.2269945398592 59.404 0.87024 56.494 56.076 56.946 -2.9105 54 24 3 0 0 0 0.8956 1 11341 11341 0.12286 0 1 2775500 + 33568 18373 22531 22546 33073 33073 0.1522439099597932 PILVHEWRMPY 11 Unmodified _PILVHEWRMPY_ 0 0 0 REV__ENST00000590444.5_1_19:6475849-6475978:-|nuORF REV__ENST00000590444.5_1_19:6475849-6475978:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2545471191406 3 480.920069 1439.73838 NaN NaN NaN NaN NaN NaN NaN 129.9 1 125.26 124.76 125.76 -4.6359 0 0 0 0.23689 1 25600 25600 2.8433 0.21205 1 + 33569 13663 22532 22547 33074 33074 0.03609669887805467 PIMADMEDG 9 Unmodified _PIMADMEDG_ 0 0 0 REV__NUP214|p.F123Lfs*23|1|0.39|ENSG00000126883|chr9:131128453-131128453|T/-|frameshift_variant REV__NUP214|p.F123Lfs*23|1|0.39|ENSG00000126883|chr9:131128453-131128453|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2737121582031 2 489.698986 977.383418 0.53228 0.00026066 0.79339 0.00038852 1.3257 0.00064918 489.6993862999296 117.89 0.88411 113.28 112.82 113.7 -4.6106 33 24 2 0 0 0 0.8319 1 22624 22624 7.9102 2.1497 1 1044000 + 33570 15871 22533 22548 33075 33075 -0.10617796976521277 PINRIGHR 8 Unmodified _PINRIGHR_ 0 0 0 REV__ENST00000602213.5_1_17:70080125-70081134:-|nuORF REV__ENST00000602213.5_1_17:70080125-70081134:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7849426269531 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 140.75 1 136.1 135.6 136.6 -4.6493 0 0 0 0.21486 1 27791 27791 5.2307 0.90143 1 + 33571 22796 22534 22549 33076 33076 0.07466537696939213 PINSNAPH 8 Unmodified _PINSNAPH_ 0 0 0 REV__ENSG00000164500|ENST00000297001|SPATA48 REV__ENSG00000164500|ENST00000297001|SPATA48 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2529296875 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 132.2 1 127.4 126.9 127.9 -4.799 0 0 0 0.21486 1 25454 25454 9.3474 0 1 + 33572 17687 22535 22550 33077 33077 -0.01620514484955038 PIPGPSTPY 9 Unmodified _PIPGPSTPY_ 0 0 0 REV__ENSG00000065060|ENST00000192788|BLTP3A REV__ENSG00000065060|ENST00000192788|BLTP3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651611328125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.329 1 69.329 68.829 69.829 0 0 0 0 0.23508 1 13420 13420 2.9952 0 1 + 33573 14182 22536 22551 33078 33078 0.00354693631857117 PIPIVVKY 8 Unmodified _PIPIVVKY_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8;GPATCH8|p.Q189Tfs*10|3|0.25|ENSG00000186566|chr17:44405979-44405980|-/T|frameshift_variant;GPATCH8|p.E360Rfs*3|3|0.32|ENSG00000186566|chr17:44400999-44401000|-/T|frameshift_variant;GPATCH8|p.G437Rfs*7|1|0.38|ENSG00000186566|chr17:44400768-44400769|-/T|frameshift_variant ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1653137207031 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 72.116 1 72.116 71.616 72.616 0 0 0 0 0.23584 1 13976 13976 0.62683 0 1 33574 7066 22537 22552 33079 33079 0.11265324321982462 PIPIVVKY 8 Unmodified _PIPIVVKY_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8;GPATCH8|p.Q189Tfs*10|3|0.25|ENSG00000186566|chr17:44405979-44405980|-/T|frameshift_variant;GPATCH8|p.E360Rfs*3|3|0.32|ENSG00000186566|chr17:44400999-44401000|-/T|frameshift_variant;GPATCH8|p.G437Rfs*7|1|0.38|ENSG00000186566|chr17:44400768-44400769|-/T|frameshift_variant ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649169921875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 72.397 1 72.397 71.897 72.897 0 0 0 0 0.23584 1 14039 14039 0.62683 0 1 33575 7066 22537 22552 33080 33080 0.11265324321982462 PIPIVVKY 8 Unmodified _PIPIVVKY_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8;GPATCH8|p.Q189Tfs*10|3|0.25|ENSG00000186566|chr17:44405979-44405980|-/T|frameshift_variant;GPATCH8|p.E360Rfs*3|3|0.32|ENSG00000186566|chr17:44400999-44401000|-/T|frameshift_variant;GPATCH8|p.G437Rfs*7|1|0.38|ENSG00000186566|chr17:44400768-44400769|-/T|frameshift_variant ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1575927734375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 16.155 1 14.939 14.439 15.439 -1.2159 0 0 0 0.21486 1 2530 2530 1.6526 0.17072 1 33576 7066 22537 22552 33081 33081 0.11265324321982462 PIPIVVKY 8 Unmodified _PIPIVVKY_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8;GPATCH8|p.Q189Tfs*10|3|0.25|ENSG00000186566|chr17:44405979-44405980|-/T|frameshift_variant;GPATCH8|p.E360Rfs*3|3|0.32|ENSG00000186566|chr17:44400999-44401000|-/T|frameshift_variant;GPATCH8|p.G437Rfs*7|1|0.38|ENSG00000186566|chr17:44400768-44400769|-/T|frameshift_variant ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16461181640625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 126.65 1 122.03 121.53 122.53 -4.6172 0 0 0 0.21486 1 24971 24971 0.40072 0.1317 1 33577 7066 22537 22552 33082 33082 0.11265324321982462 PIPIVVKY 8 Unmodified _PIPIVVKY_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8;GPATCH8|p.Q189Tfs*10|3|0.25|ENSG00000186566|chr17:44405979-44405980|-/T|frameshift_variant;GPATCH8|p.E360Rfs*3|3|0.32|ENSG00000186566|chr17:44400999-44401000|-/T|frameshift_variant;GPATCH8|p.G437Rfs*7|1|0.38|ENSG00000186566|chr17:44400768-44400769|-/T|frameshift_variant ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647644042969 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 64.058 1 60.643 60.143 61.143 -3.4158 0 0 0 0.21486 1 11980 11980 3.9444 0.3479 1 33578 7066 22537 22552 33083 33083 0.11265324321982462 PIPKKPIVLF 10 Unmodified _PIPKKPIVLF_ 0 0 0 REV__ENST00000474908.5_1_9:35813053-35813759:-|nuORF REV__ENST00000474908.5_1_9:35813053-35813759:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3263549804688 2 576.381177 1150.7478 NaN NaN NaN NaN NaN NaN NaN 143.36 1 138.46 137.96 138.96 -4.8982 0 0 0 2.8426 1 27671 27671 0.0013812 0 1 + 33579 22088 22538 22553 33084 33084 0.17845806235641248 PIPLFNEKH 9 Unmodified _PIPLFNEKH_ 0 0 0 REV__ENST00000405844.5_1_7:19765203-19769053:-|nuORF REV__ENST00000405844.5_1_7:19765203-19769053:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77880859375 2 547.803291 1093.59203 NaN NaN NaN NaN NaN NaN NaN 164.71 1 159.67 159.17 160.17 -5.0446 0 0 0 0.23508 1 32142 32142 10.824 0 1 + 33580 21386 22539 22554 33085 33085 0.04897735714234841 PIPVLKKG 8 Unmodified _PIPVLKKG_ 0 0 0 nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14 nc|ENSG00000185842|Q0VDD8-4|DNAH14 nc|ENSG00000185842|Q0VDD8-4|DNAH14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.2909851074219 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 134.79 1 129.92 129.42 130.42 -4.8726 0 0 0 0.21486 1 25893 25893 0.79363 0 1 33581 7016 22540 22555 33086 33086 0.13276457524818852 PIQTKQKI 8 Unmodified _PIQTKQKI_ 0 0 0 REV__nc|ENSG00000110330|Q13490-2|BIRC2 REV__nc|ENSG00000110330|Q13490-2|BIRC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.744384765625 2 478.300384 954.586216 0.18363 8.7831E-05 -0.18204 -8.7072E-05 0.0015876 7.5936E-07 478.30010141177536 162.12 0.64592 156.98 156.62 157.26 -5.1438 27 18 2 0 0 0 0.65893 1 31547 31547 22.736 0 1 3843600 + 33582 15197 22541 22556 33087 33087 0.10710637202555517 PIRFIRLHDKL 11 Unmodified _PIRFIRLHDKL_ 0 0 0 REV__nc|ENSG00000149781|Q86UX7|FERMT3 REV__nc|ENSG00000149781|Q86UX7|FERMT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 470.6249084472656 3 469.957623 1406.85104 -0.0058811 -2.7639E-06 0.10759 5.0562E-05 0.10171 4.7798E-05 469.95751839968705 142.79 0.76411 142.79 142.44 143.21 0 43 21 3 0 0 0 0.59092 1 28504 28504 2.732 2.7006 1 3651700 + 33583 24095 22542 22557 33088 33088 0.1638868667614588 PIRFIRLHDKL 11 Unmodified _PIRFIRLHDKL_ 0 0 0 REV__nc|ENSG00000149781|Q86UX7|FERMT3 REV__nc|ENSG00000149781|Q86UX7|FERMT3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 469.957623 1406.85104 -0.0058811 -2.7639E-06 0.10759 5.0562E-05 0.10171 4.7798E-05 469.95751839968705 142.79 0.76411 142.79 142.44 143.21 0 0 0 NaN 2.732 43 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3651700 + 33584 24095 22542 22557 0.1638868667614588 PIRKVKKLL 9 Unmodified _PIRKVKKLL_ 0 0 0 ENST00000414406.2_1_12:20095069-20095366:+|nuORF ENST00000414406.2_1_12:20095069-20095366:+|nuORF ENST00000414406.2_1_12:20095069-20095366:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.791748046875 2 547.892244 1093.76993 NaN NaN NaN NaN NaN NaN NaN 56 1 52.811 52.311 53.311 -3.1895 0 0 0 0.23508 1 10367 10367 4.756 4.1545 1 33585 9601 22543 22558 33089 33089 0.2268003070407758 PIRKVKKLL 9 Unmodified _PIRKVKKLL_ 0 0 0 ENST00000414406.2_1_12:20095069-20095366:+|nuORF ENST00000414406.2_1_12:20095069-20095366:+|nuORF ENST00000414406.2_1_12:20095069-20095366:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7720336914062 2 547.892244 1093.76993 NaN NaN NaN NaN NaN NaN NaN 56.027 1 52.838 52.338 53.338 -3.1895 0 0 0 0.19626 1 10373 10373 0.0033805 0 1 33586 9601 22543 22558 33090 33090 0.2268003070407758 PIRRKALKI 9 Unmodified _PIRRKALKI_ 0 0 0 REV__ENSG00000137073|ENST00000379238|UBAP2 REV__ENSG00000137073|ENST00000379238|UBAP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7673950195312 2 547.879668 1093.74478 NaN NaN NaN NaN NaN NaN NaN 170.42 1 165.51 165.01 166.01 -4.9149 0 0 0 0.23508 1 33697 33697 2.3027 0 1 + 33587 16372 22544 22559 33091 33091 0.20165975901500133 PIRVRRKV 8 Unmodified _PIRVRRKV_ 0 0 0 REV__nc|ENSG00000184792|Q969R2-2|OSBP2 REV__nc|ENSG00000184792|Q969R2-2|OSBP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 512.270263671875 2 512.348535 1022.68252 NaN NaN NaN NaN NaN NaN NaN 170.09 1 165.3 164.8 165.8 -4.7898 0 0 0 0.20568 1 34499 34499 20.871 1.4322 1 + 33588 18915 22545 22560 33092 33092 0.17208249553175392 PIRYISTL 8 Unmodified _PIRYISTL_ 0 0 0 REV__ENST00000396051.2_1_4:71768157-71816480:+|nuORF REV__ENST00000396051.2_1_4:71768157-71816480:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7861328125 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 122 1 117.46 116.96 117.96 -4.5476 0 0 0 0.20896 1 24046 24046 18.135 0 1 + 33589 21274 22546 22561 33093 33093 0.07734948311224343 PISEQQLF 8 Unmodified _PISEQQLF_ 0 0 0 REV__nc|ENSG00000177398|Q5DID0-3|UMODL1 REV__nc|ENSG00000177398|Q5DID0-3|UMODL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2383728027344 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 130.03 1 125.39 124.89 125.89 -4.6359 0 0 0 0.22934 1 25626 25626 0.62683 0.37535 1 + 33590 18555 22547 22562 33094 33094 0.009820786605587273 PISLMAWLI 9 Unmodified _PISLMAWLI_ 0 0 0 REV__PIEZO1|p.F1715I|1|0.23|ENSG00000103335|chr16:88721879-88721879|A/T|missense_variant REV__PIEZO1|p.F1715I|1|0.23|ENSG00000103335|chr16:88721879-88721879|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2681274414062 2 522.301539 1042.58852 NaN NaN NaN NaN NaN NaN NaN 138.84 1 133.99 133.49 134.49 -4.8492 0 0 0 0.19657 1 26764 26764 4.897 0 1 + 33591 24469 22548 22563 33095 33095 0.06893349616007072 PISSSLSTM 9 Unmodified _PISSSLSTM_ 0 0 0 REV__PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant REV__PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5340881347656 2 461.731143 921.447733 0.44077 0.00020352 -1.0254 -0.00047347 -0.58464 -0.00026995 461.7303209917846 99.509 0.69946 99.509 99.058 99.757 0 23 19 2 0 0 0 0.8319 1 19484 19484 7.9102 7.9102 1 912490 + 33592 19836 22549 22564 33096 33096 -0.01613273828070305 PISTITKF 8 Unmodified _PISTITKF_ 0 0 0 REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76824951171875 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 147.18 1 142.07 141.57 142.57 -5.1108 0 0 0 0.21181 1 28477 28477 15.768 0 1 + 33593 13707 22550 22565 33097 33097 0.06567857045604342 PISYRSAK 8 Unmodified _PISYRSAK_ 0 0 0 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.522216796875 2 461.261259 920.507966 NaN NaN NaN NaN NaN NaN NaN 142.79 1 142.79 142.29 143.29 0 0 0 0 0.21486 1 28477 28477 10.824 0.75 1 + 33594 15174 22551 22566 33098 33098 0.0445320461733445 PITETDHRP 9 Unmodified _PITETDHRP_ 0 0 0 ENST00000328965.8_2_11:120099983-120100535:+|nuORF ENST00000328965.8_2_11:120099983-120100535:+|nuORF ENST00000328965.8_2_11:120099983-120100535:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2704467773438 2 533.269813 1064.52507 0.1038 5.5353E-05 -2.0308 -0.0010829 -1.927 -0.0010276 533.7697506293931 122.35 0.64645 122.35 121.93 122.57 0 37 18 3 0 0 0 0.14832 1 24150 24150 44.407 6.2314 1 3329000 33595 8761 22552 22567 33099 33099 -0.004609195675584488 PITHNGDSG 9 Unmodified _PITHNGDSG_ 0 0 0 REV__ENST00000571776.1_1_16:74694828-74700696:-|nuORF REV__ENST00000571776.1_1_16:74694828-74700696:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 448.776123046875 2 449.206681 896.398809 NaN NaN NaN NaN NaN NaN NaN 143.69 1 143.69 143.19 144.19 0 0 0 0 0.19656 1 28681 28681 0.029283 0.021006 1 + 33596 18023 22553 22568 33100 33100 -0.05353426072804268 PITKYTKE 8 Unmodified _PITKYTKE_ 0 0 0 DICER1|p.S911I|1|0.39|ENSG00000100697|chr14:95107680-95107680|C/A|missense_variant DICER1|p.S911I|1|0.39|ENSG00000100697|chr14:95107680-95107680|C/A|missense_variant DICER1|p.S911I|1|0.39|ENSG00000100697|chr14:95107680-95107680|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2681579589844 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 155.91 1 151.13 150.63 151.63 -4.7791 0 0 0 0.20896 1 30991 30991 18.135 2.2878 1 33597 836 22554 22569 33101 33101 0.04846938211710494 PITQEFPP 8 Unmodified _PITQEFPP_ 0 0 0 REV__ENSG00000105996|ENST00000222718|HOXA2 REV__ENSG00000105996|ENST00000222718|HOXA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651306152344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.912 1 74.912 74.412 75.412 0 0 0 0 0.23837 1 14548 14548 0.12286 0 1 + 33598 15026 22555 22570 33102 33102 0.00354693631857117 PITQEFPP 8 Unmodified _PITQEFPP_ 0 0 0 REV__ENSG00000105996|ENST00000222718|HOXA2 REV__ENSG00000105996|ENST00000222718|HOXA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651306152344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.934 1 74.934 74.434 75.434 0 0 0 0 0.21486 1 14552 14552 1.8442 0 1 + 33599 15026 22555 22570 33103 33103 0.00354693631857117 PITQEFPP 8 Unmodified _PITQEFPP_ 0 0 0 REV__ENSG00000105996|ENST00000222718|HOXA2 REV__ENSG00000105996|ENST00000222718|HOXA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1651916503906 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 68.07 1 64.534 64.034 65.034 -3.5362 0 0 0 0.21486 1 12781 12781 1.8442 0 1 + 33600 15026 22555 22570 33104 33104 0.00354693631857117 PITQEFPP 8 Unmodified _PITQEFPP_ 0 0 0 REV__ENSG00000105996|ENST00000222718|HOXA2 REV__ENSG00000105996|ENST00000222718|HOXA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1700134277344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 107.18 1 102.77 102.27 103.27 -4.4121 0 0 0 0.21486 1 20561 20561 4.3292 0 1 + 33601 15026 22555 22570 33105 33105 0.00354693631857117 PITQEFPP 8 Unmodified _PITQEFPP_ 0 0 0 REV__ENSG00000105996|ENST00000222718|HOXA2 REV__ENSG00000105996|ENST00000222718|HOXA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 67.758 1 64.432 63.932 64.932 -3.3268 0 0 0 0.21486 1 12781 12781 1.8442 0 1 + 33602 15026 22555 22570 33106 33106 0.00354693631857117 PIVCMFITY 9 Unmodified _PIVCMFITY_ 0 0 0 sp|F5HGH8|US20_HCMVMMembraneproteinUS20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US20PE=4SV=1;sp|P09724|US20_HCMVATransmembraneproteinHWLF3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US20PE=3SV=4 sp|F5HGH8|US20_HCMVMMembraneproteinUS20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US20PE=4SV=1 sp|F5HGH8|US20_HCMVMMembraneproteinUS20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US20PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7744750976562 2 543.771757 1085.52896 NaN NaN NaN NaN NaN NaN NaN 139.2 1 134.55 134.05 135.05 -4.6439 0 0 0 0.23411 1 27480 27480 13.508 0.97634 1 33603 25738 22556 22571 33107 33107 -0.01038289389680358 PIVFWNLVWYF 11 Unmodified _PIVFWNLVWYF_ 0 0 0 DENND4A|p.S1755Vfs*10|1|0.47|ENSG00000174485|chr15:65664687-65664687|T/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A DENND4A|p.S1755Vfs*10|1|0.47|ENSG00000174485|chr15:65664687-65664687|T/-|frameshift_variant DENND4A|p.S1755Vfs*10|1|0.47|ENSG00000174485|chr15:65664687-65664687|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3934936523438 2 742.392273 1482.76999 NaN NaN NaN NaN NaN NaN NaN 145.7 1 140.7 140.2 141.2 -5 0 0 0 0.22632 1 28181 28181 0.00056442 0 1 33604 815 22557 22572 33108 33108 0.047919859133799036 PIVKLPKLV 9 Unmodified _PIVKLPKLV_ 0 0 0 REV__ENST00000604062.6_2_X:53123411-53128703:+|nuORF REV__ENST00000604062.6_2_X:53123411-53128703:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.2380676269531 3 336.238956 1005.69504 NaN NaN NaN NaN NaN NaN NaN 14.803 1 13.689 13.189 14.189 -1.1142 0 0 0 0.23508 1 2243 2243 0.26902 0 1 + 33605 23439 22558 22573 33109 33109 0.19241848172839582 PIVYELDKNL 10 Unmodified _PIVYELDKNL_ 0 0 0 ENST00000548270.1_1_12:94034600-94035134:-|nuORF;ENST00000467867.1_1_10:99187588-99192278:+|nuORF;ENSG00000226784|ENST00000458128|PGAM4;ENSG00000171314|ENST00000334828|PGAM1 ENST00000548270.1_1_12:94034600-94035134:-|nuORF ENST00000548270.1_1_12:94034600-94035134:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2947387695312 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 76.38 1 72.746 72.246 73.246 -3.6337 0 0 0 2.8426 1 14541 14541 0.51642 0.45255 1 33606 6138 22559 22574 33110 33110 0.06146836991774762 PIYKRILL 8 Unmodified _PIYKRILL_ 0 0 0 REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1 REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.21685791015625 3 339.226939 1014.65899 NaN NaN NaN NaN NaN NaN NaN 99.932 1 99.932 99.432 100.43 0 0 0 0 0.21486 1 19600 19600 1.8442 0 1 + 33607 17535 22560 22575 33111 33111 0.15224390996002057 PKAGHDAGP 9 Unmodified _PKAGHDAGP_ 0 0 0 ENSG00000198816|ENST00000597229|ZNF358 ENSG00000198816|ENST00000597229|ZNF358 ENSG00000198816|ENST00000597229|ZNF358 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2382507324219 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 13.99 1 12.876 12.376 13.376 -1.1142 0 0 0 0.23508 1 2066 2066 4.3292 0 1 33608 7501 22561 22576 33112 33112 -0.01620514484955038 PKAIQLESCY 10 Unmodified _PKAIQLESCY_ 0 0 0 REV__ENSG00000127124|ENST00000372583|HIVEP3 REV__ENSG00000127124|ENST00000372583|HIVEP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3236694335938 2 576.291899 1150.56925 NaN NaN NaN NaN NaN NaN NaN 23.206 1 21.417 20.917 21.917 -1.7886 0 0 0 2.8426 1 3722 3722 0.69767 0 1 + 33609 15878 22562 22577 33113 33113 -1.6514655499122455E-05 PKAKKKAPLAK 11 Unmodified _PKAKKKAPLAK_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2543334960938 2 590.400433 1178.78631 NaN NaN NaN NaN NaN NaN NaN 163.96 1 158.9 158.4 159.4 -5.0648 0 0 0 0.22632 1 31938 31938 0.172 0.098736 1 33610 3373 22563 22578 33114 33114 0.20407111870144945 PKALLPVL 8 Unmodified _PKALLPVL_ 0 0 0 PTCD1|p.A539P|1|0.15|ENSG00000106246|chr7:99424917-99424917|C/G|missense_variant PTCD1|p.A539P|1|0.15|ENSG00000106246|chr7:99424917-99424917|C/G|missense_variant PTCD1|p.A539P|1|0.15|ENSG00000106246|chr7:99424917-99424917|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.7904052734375 2 425.791664 849.568775 NaN NaN NaN NaN NaN NaN NaN 6.8436 1 5.8288 5.3288 6.3288 -1.0148 0 0 0 0.2396 1 495 495 0.30703 0 1 33611 12841 22564 22579 33115 33115 0.13797341667554974 PKALLPVL 8 Unmodified _PKALLPVL_ 0 0 0 PTCD1|p.A539P|1|0.15|ENSG00000106246|chr7:99424917-99424917|C/G|missense_variant PTCD1|p.A539P|1|0.15|ENSG00000106246|chr7:99424917-99424917|C/G|missense_variant PTCD1|p.A539P|1|0.15|ENSG00000106246|chr7:99424917-99424917|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.7903747558594 2 425.791664 849.568775 NaN NaN NaN NaN NaN NaN NaN 7.5944 1 6.5796 6.0796 7.0796 -1.0148 0 0 0 0.23899 1 633 633 1.3295 0 1 33612 12841 22564 22579 33116 33116 0.13797341667554974 PKARIDVTF 9 Unmodified _PKARIDVTF_ 0 0 0 REV__nc|ENSG00000115677|Q00341-2|HDLBP REV__nc|ENSG00000115677|Q00341-2|HDLBP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.696533203125 2 523.803291 1045.59203 NaN NaN NaN NaN NaN NaN NaN 119.86 1 115.22 114.72 115.72 -4.645 0 0 0 0.23508 1 23003 23003 10.824 0 1 + 33613 15445 22565 22580 33117 33117 0.07105735714230832 PKASPVYCP 9 Unmodified _PKASPVYCP_ 0 0 0 SKIDA1|p.G539Vfs*8|1|0.08|ENSG00000180592|chr10:21516207-21516208|-/TA|frameshift_variant;nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1 SKIDA1|p.G539Vfs*8|1|0.08|ENSG00000180592|chr10:21516207-21516208|-/TA|frameshift_variant SKIDA1|p.G539Vfs*8|1|0.08|ENSG00000180592|chr10:21516207-21516208|-/TA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2456359863281 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 174.59 1 169.7 169.2 170.2 -4.8845 0 0 0 0.19652 1 34689 34689 0.073264 0.0093988 1 33614 6681 22566 22581 33118 33118 -0.007929598659416115 PKAVSVFFKE 10 Unmodified _PKAVSVFFKE_ 0 0 0 ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF;ENSG00000141526|ENST00000582743|SLC16A3 ENST00000581642.1_1_17:80193878-80194172:+|nuORF ENST00000581642.1_1_17:80193878-80194172:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3283081054688 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 167.62 1 162.83 162.33 163.33 -4.7898 0 0 0 0.22588 1 33826 33826 10.8 0 1 33615 4379 22567 22582 33119 33119 0.06935175545504535 PKCRSGGG 8 Unmodified _PKCRSGGG_ 0 0 0 REV__PPP1R26|p.S771Vfs*10|2|0.42|ENSG00000196422|chr9:135486815-135486815|C/-|frameshift_variant REV__PPP1R26|p.S771Vfs*10|2|0.42|ENSG00000196422|chr9:135486815-135486815|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2104797363281 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 93.252 1 93.252 92.752 93.752 0 0 0 0 0.23782 1 18244 18244 0.12286 0 1 + 33616 19245 22568 22583 33120 33120 -0.024761260455420597 PKCRSGGG 8 Unmodified _PKCRSGGG_ 0 0 0 REV__PPP1R26|p.S771Vfs*10|2|0.42|ENSG00000196422|chr9:135486815-135486815|C/-|frameshift_variant REV__PPP1R26|p.S771Vfs*10|2|0.42|ENSG00000196422|chr9:135486815-135486815|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2128601074219 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 97.598 1 93.363 92.863 93.863 -4.2348 0 0 0 0.23782 1 18644 18644 0.12286 0 1 + 33617 19245 22568 22583 33121 33121 -0.024761260455420597 PKDELMEKY 9 Unmodified _PKDELMEKY_ 0 0 0 REV__ENSG00000156886|ENST00000389202|ITGAD REV__ENSG00000156886|ENST00000389202|ITGAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3256225585938 2 576.783907 1151.55326 -0.035351 -2.039E-05 1.5093 0.00087053 1.4739 0.00085014 576.7850079007846 67.576 0.52724 67.576 67.333 67.861 0 18 14 2 0 0 0 0.48307 1 13060 13060 33.445 8.0456 1 2782600 + 33618 17275 22569 22584 33122 33122 -0.016453577024549304 PKDELMEKY 9 Unmodified _PKDELMEKY_ 0 0 0 REV__ENSG00000156886|ENST00000389202|ITGAD REV__ENSG00000156886|ENST00000389202|ITGAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3377075195312 2 576.783907 1151.55326 -0.090284 -5.2075E-05 1.9678 0.001135 1.8775 0.0010829 576.7853547456997 70.988 0.81168 67.739 67.216 68.028 -3.2492 34 22 3 0 0 0 0.74927 1 13798 13798 23.79 19.461 1 2182400 + 33619 17275 22569 22584 33123 33123 -0.016453577024549304 PKDELMEKY 9 Unmodified _PKDELMEKY_ 0 0 0 REV__ENSG00000156886|ENST00000389202|ITGAD REV__ENSG00000156886|ENST00000389202|ITGAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3325805664062 2 576.783907 1151.55326 0.36257 0.00020912 -0.019353 -1.1163E-05 0.34322 0.00019796 576.7837405014907 71.216 0.49411 67.749 67.556 68.05 -3.467 20 13 2 0 0 0 0.72134 1 13478 13478 27.223 15.583 1 2594600 + 33620 17275 22569 22584 33124 33124 -0.016453577024549304 PKDGSHIRVHV 11 Unmodified _PKDGSHIRVHV_ 0 0 0 REV__ENSG00000167635|ENST00000443387|ZNF146 REV__ENSG00000167635|ENST00000443387|ZNF146 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.76123046875 2 622.846553 1243.67855 NaN NaN NaN NaN NaN NaN NaN 71.571 1 68.322 67.822 68.822 -3.2492 0 0 0 0.23379 1 13937 13937 5.2969 0.39987 1 + 33621 17949 22570 22585 33125 33125 0.06646115268790709 PKDRYSCDSCS 11 Unmodified _PKDRYSCDSCS_ 0 0 0 REV__ENST00000566016.5_1_16:46637844-46655271:-|nuORF REV__ENST00000566016.5_1_16:46637844-46655271:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7501831054688 2 630.752812 1259.49107 NaN NaN NaN NaN NaN NaN NaN 7.1144 1 6.4353 5.9353 6.9353 -0.67913 0 0 0 0.23698 1 612 612 0.30703 0.30703 1 + 33622 18214 22571 22586 33126 33126 -0.1282945211310107 PKEEFVIDING 11 Unmodified _PKEEFVIDING_ 0 0 0 ENST00000377365.3_1_5:169311411-169311546:-|nuORF ENST00000377365.3_1_5:169311411-169311546:-|nuORF ENST00000377365.3_1_5:169311411-169311546:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7589111328125 2 630.82716 1259.63977 NaN NaN NaN NaN NaN NaN NaN 110.81 1 106.38 105.88 106.88 -4.4231 0 0 0 0.19759 1 21828 21828 19.362 4.1135 1 33623 9262 22572 22587 33127 33127 0.02033345123777508 PKEESHARK 9 Unmodified _PKEESHARK_ 0 0 0 REV__nc|ENSG00000125846|P52736-3|ZNF133 REV__nc|ENSG00000125846|P52736-3|ZNF133 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2625732421875 2 541.291079 1080.56761 0.17477 9.4602E-05 0.037133 2.01E-05 0.2119 0.0001147 541.2910613813181 13.183 0.27851 13.183 13.064 13.342 0 19 7 4 0 0 0 0.88165 1 1869 1869 3.2813 0.70383 1 10808000 + 33624 15837 22573 22588 33128 33128 0.030544755607024854 PKEGFSYSTST 11 Unmodified _PKEGFSYSTST_ 0 0 0 REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2984619140625 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 168.85 1 163.92 163.42 164.42 -4.9295 0 0 0 0.23087 1 33306 33306 7.609 1.4032 1 + 33625 13013 22574 22589 33129 33129 -0.047637936983846885 PKEGSLPLQYE 11 Unmodified _PKEGSLPLQYE_ 0 0 0 nc|ENSG00000154639|P78310-7|CXADR;ENSG00000154639|ENST00000284878|CXADR;CXADR|p.N201Mfs*27|1|0.28|ENSG00000154639|chr21:17560727-17560727|A/-|frameshift_variant;nc|ENSG00000154639|P78310-5|CXADR;nc|ENSG00000154639|P78310-2|CXADR;nc|ENSG00000154639|P78310-6|CXADR;ENST00000556905.2_1_15:22016140-22016464:-|nuORF nc|ENSG00000154639|P78310-7|CXADR nc|ENSG00000154639|P78310-7|CXADR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7542724609375 2 630.82716 1259.63977 NaN NaN NaN NaN NaN NaN NaN 152.84 1 147.61 147.11 148.11 -5.2209 0 0 0 0.21872 1 29622 29622 14.405 0 1 33626 5018 22575 22590 33130 33130 0.02033345123777508 PKEKKKLIR 9 Unmodified _PKEKKKLIR_ 0 0 0 ENST00000216456.6_1_14:68118104-68129806:-|nuORF ENST00000216456.6_1_14:68118104-68129806:-|nuORF ENST00000216456.6_1_14:68118104-68129806:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 570.4619750976562 2 570.384783 1138.75501 NaN NaN NaN NaN NaN NaN NaN 166.1 1 166.1 165.6 166.6 0 0 0 0 0.23508 1 33793 33793 6.7232 2.7788 1 33627 8113 22576 22591 33131 33131 0.1911853883607364 PKEKRAAQGP 10 Unmodified _PKEKRAAQGP_ 0 0 0 ENSG00000165197|ENST00000297904|VEGFD ENSG00000165197|ENST00000297904|VEGFD ENSG00000165197|ENST00000297904|VEGFD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2589721679688 2 541.309272 1080.60399 NaN NaN NaN NaN NaN NaN NaN 117.48 1 117.48 116.98 117.98 0 0 0 0 0.22588 1 23142 23142 11.495 2.7493 1 33628 5608 22577 22592 33132 33132 0.06691352457414723 PKEKRNDDRS 10 Unmodified _PKEKRNDDRS_ 0 0 0 ENST00000460881.5_1_20:36841446-36845354:-|nuORF ENST00000460881.5_1_20:36841446-36845354:-|nuORF ENST00000460881.5_1_20:36841446-36845354:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7720947265625 2 622.820732 1243.62691 0.40691 0.00025343 4.3451 0.0027062 4.752 0.0029596 623.3248295293668 158.74 0.17374 158.74 158.64 158.81 0 5 4 2 0 0 0 0.72406 1 31871 31871 8.7454 2.5396 1 2203300 33629 10060 22578 22593 33133 33133 0.014843267842252317 PKEKTYLRL 9 Unmodified _PKEKTYLRL_ 0 0 0 nc|ENSG00000226807|Q6ZUA9|MROH5 nc|ENSG00000226807|Q6ZUA9|MROH5 nc|ENSG00000226807|Q6ZUA9|MROH5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 574.7095947265625 2 574.345323 1146.67609 0.29788 0.00017109 2.1344 0.0012259 2.4322 0.0013969 574.847748889868 166.23 0.16803 166.23 166.13 166.3 0 6 4 2 0 0 0 0.69259 1 33803 33803 6.7232 1.4263 1 10512000 33630 12602 22579 22594 33134 33134 0.10862266811113841 PKELAGHKY 9 Unmodified _PKELAGHKY_ 0 0 0 tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1 tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1 tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2666015625 2 521.787641 1041.56073 -0.23968 -0.00012506 1.9646 0.0010251 1.7249 0.00090005 521.789406760985 77.546 0.24725 74.083 73.934 74.181 -3.4633 7 6 2 0 0 0 0.68435 1 15133 15133 7.2892 0.56607 1 1074100 33631 25973 22580 22595 33135 33135 0.04161162680156849 PKENSHTRN 9 Unmodified _PKENSHTRN_ 0 0 0 REV__nc|ENSG00000074047|P10070|GLI2 REV__nc|ENSG00000074047|P10070|GLI2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2816162109375 2 541.770511 1081.52647 NaN NaN NaN NaN NaN NaN NaN 14.303 1 13.189 12.689 13.689 -1.1142 0 0 0 0.23508 1 2136 2136 3.5965 0.8613 1 + 33632 14308 22581 22596 33136 33136 -0.011032854787799806 PKEPAVQKK 9 Unmodified _PKEPAVQKK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 512.475341796875 2 512.811116 1023.60768 NaN NaN NaN NaN NaN NaN NaN 9.5411 1 8.7468 8.2468 9.2468 -0.79424 0 0 0 0.19626 1 1110 1110 0.073264 0 1 + 33633 15339 22582 22597 33137 33137 0.09682022231277188 PKEPDVYFWFR 11 Unmodified _PKEPDVYFWFR_ 0 0 0 REV__ENST00000263331.9_1_2:113299748-113300117:+|nuORF REV__ENST00000263331.9_1_2:113299748-113300117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3697509765625 2 742.372069 1482.72959 NaN NaN NaN NaN NaN NaN NaN 154.12 1 154.12 153.62 154.62 0 0 0 0 0.23698 1 30887 30887 2.4985 1.169 1 + 33634 20210 22583 22598 33138 33138 0.0075301952297195385 PKEQKKYLLL 10 Unmodified _PKEQKKYLLL_ 0 0 0 ENSG00000243896|ENST00000641841|OR2A7;ENSG00000221933|ENST00000641663|OR2A25;ENSG00000180658|ENST00000315453|OR2A4 ENSG00000243896|ENST00000641841|OR2A7 ENSG00000243896|ENST00000641841|OR2A7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7728881835938 2 630.389731 1258.76491 0.74256 0.00046811 -0.40816 -0.0002573 0.33441 0.00021081 630.389486664783 100.32 0.72598 100.32 100 100.73 0 33 20 2 0 0 0 0.75133 1 19687 19687 5.2969 0 1 3065200 33635 6687 22584 22599 33139 33139 0.1458768205081924 PKETWKFTL 9 Unmodified _PKETWKFTL_ 0 0 0 nc|ENSG00000136250|P28039-2|AOAH;ENSG00000136250|ENST00000617537|AOAH nc|ENSG00000136250|P28039-2|AOAH nc|ENSG00000136250|P28039-2|AOAH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32080078125 2 575.318774 1148.623 -0.58712 -0.00033778 -0.96377 -0.00055447 -1.5509 -0.00089225 575.3181212230805 12.237 0.1335 11.107 11.009 11.143 -1.1293 7 3 3 0 0 0 0.80201 1 1492 1492 1.6526 0.45928 1 833110 33636 3998 22585 22600 33140 33140 0.054628890284675435 PKEVKEEEKE 10 Unmodified _PKEVKEEEKE_ 0 0 0 REV__ENSG00000125676|ENST00000245838|THOC2 REV__ENSG00000125676|ENST00000245838|THOC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7639770507812 2 622.822075 1243.6296 NaN NaN NaN NaN NaN NaN NaN 167.38 1 162.49 161.99 162.99 -4.8916 0 0 0 0.22543 1 32910 32910 19.362 1.9193 1 + 33637 15822 22586 22601 33141 33141 0.017527373985330996 PKEYICCCKSS 11 Unmodified _PKEYICCCKSS_ 0 0 0 REV__ENSG00000204619|ENST00000376772|PPP1R11 REV__ENSG00000204619|ENST00000376772|PPP1R11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7716674804688 2 630.774702 1259.53485 NaN NaN NaN NaN NaN NaN NaN 138.73 1 138.73 138.23 139.23 0 0 0 0 0.2321 1 27554 27554 6.6304 0.42459 1 + 33638 19554 22587 22602 33142 33142 -0.08453558940323092 PKEYLISL 8 Unmodified _PKEYLISL_ 0 0 0 ENST00000490493.1_1_7:105207903-105231821:-|nuORF;ENST00000469099.5_1_7:105205851-105231821:-|nuORF;ENSG00000185055|ENST00000480514|EFCAB10 ENST00000490493.1_1_7:105207903-105231821:-|nuORF ENST00000490493.1_1_7:105207903-105231821:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78076171875 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 148.86 1 148.86 148.36 149.36 0 0 0 0 0.21486 1 29793 29793 12.532 2.4576 1 33639 10176 22588 22603 33143 33143 0.06612126217100922 PKFALSSTE 9 Unmodified _PKFALSSTE_ 0 0 0 REV__ENSG00000182263|ENST00000333129|FIGN REV__ENSG00000182263|ENST00000333129|FIGN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25775146484375 2 490.258382 978.502212 0.43652 0.00021401 -1.5858 -0.00077747 -1.1493 -0.00056347 490.2582068536789 20.599 0.84386 19.202 18.76 19.603 -1.3966 65 23 4 0 0 0 0.6231 1 3523 3523 0.073264 0 1 27982000 + 33640 18771 22589 22604 33144 33144 0.012100613149982564 PKFFQLFKP 9 Unmodified _PKFFQLFKP_ 0 0 0 REV__TNPO2|p.H183P|1|0.54|ENSG00000105576|chr19:12715423-12715423|T/G|missense_variant REV__TNPO2|p.H183P|1|0.54|ENSG00000105576|chr19:12715423-12715423|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3175659179688 2 576.334227 1150.6539 NaN NaN NaN NaN NaN NaN NaN 47.715 1 44.773 44.273 45.273 -2.9421 0 0 0 0.18755 1 8707 8707 0.37959 0 1 + 33641 24830 22590 22605 33145 33145 0.08460087133380512 PKFLHKNLP 9 Unmodified _PKFLHKNLP_ 0 0 0 REV__nc|ENSG00000036549|Q8IYH5-2|ZZZ3 REV__nc|ENSG00000036549|Q8IYH5-2|ZZZ3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7716064453125 2 547.329476 1092.6444 0.21921 0.00011998 0.43278 0.00023687 0.65199 0.00035685 547.8285923141593 90.954 0.13586 87.176 87.127 87.263 -3.7779 5 3 2 0 0 0 0.85111 1 17406 17406 6.7232 1.9672 1 449690 + 33642 14032 22591 22606 33146 33146 0.10178318847852097 PKFSGKWL 8 Unmodified _PKFSGKWL_ 0 0 0 REV__nc|ENSG00000077238|P24394-2|IL4R REV__nc|ENSG00000077238|P24394-2|IL4R MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7767028808594 2 481.776545 961.538538 0.28543 0.00013751 0.20531 9.8916E-05 0.49074 0.00023643 481.7766755307396 34.418 0.45527 32.202 32.02 32.475 -2.2158 18 12 2 0 0 0 0.72428 1 6062 6062 10.824 2.2306 1 742500 + 33643 14363 22592 22607 33147 33147 0.056229830023767136 PKFVYLVFINC 11 Unmodified _PKFVYLVFINC_ 0 0 0 REV__ENST00000488625.6_1_10:31817466-31817604:+|nuORF REV__ENST00000488625.6_1_10:31817466-31817604:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 671.9486694335938 2 671.865034 1341.71552 NaN NaN NaN NaN NaN NaN NaN 163.67 1 158.88 158.38 159.38 -4.7898 0 0 0 0.23379 1 32646 32646 5.2969 1.7004 1 + 33644 22277 22593 22608 33148 33148 0.05832650770366854 PKGAGGGC 8 Unmodified _PKGAGGGC_ 0 0 0 REV__nc|ENSG00000169062|Q9H1J1-2|UPF3A REV__nc|ENSG00000169062|Q9H1J1-2|UPF3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 648.3024291992188 1 646.297721 645.290445 0.75361 0.00048706 -2.8673 -0.0018531 -2.1137 -0.0013661 646.2984827507787 169.12 0.7868 164.24 163.93 164.72 -4.873 40 22 3 0 0 0 0.83982 1 33369 33369 2.5775 0 1 12893000 + 33645 18073 22594 22609 33149 33149 -0.04638888856925405 PKGEPGQDGEM 11 Unmodified _PKGEPGQDGEM_ 0 0 0 nc|ENSG00000050767|Q86Y22-2|COL23A1;ENSG00000050767|ENST00000390654|COL23A1 nc|ENSG00000050767|Q86Y22-2|COL23A1 nc|ENSG00000050767|Q86Y22-2|COL23A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 572.7046508789062 2 572.750595 1143.48664 NaN NaN NaN NaN NaN NaN NaN 18.114 1 16.842 16.342 17.342 -1.2722 0 0 0 0.23429 1 2702 2702 4.897 0.95262 1 33646 1243 22595 22610 33150 33150 -0.07936593264344083 PKGPGCFAP 9 Unmodified _PKGPGCFAP_ 0 0 0 REV__nc|nan|Q7Z6I8-2|C5orf24 REV__nc|nan|Q7Z6I8-2|C5orf24 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2172546386719 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 150.72 1 150.72 150.22 151.22 0 0 0 0 0.23508 1 30177 30177 4.3292 1.44 1 + 33647 18745 22596 22611 33151 33151 -0.019854982088986617 PKGPGCFAP 9 Unmodified _PKGPGCFAP_ 0 0 0 REV__nc|nan|Q7Z6I8-2|C5orf24 REV__nc|nan|Q7Z6I8-2|C5orf24 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2174072265625 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 154.83 1 154.83 154.33 155.33 0 0 0 0 0.23508 1 31034 31034 4.3292 0 1 + 33648 18745 22596 22611 33152 33152 -0.019854982088986617 PKGPSQPLHSR 11 Unmodified _PKGPSQPLHSR_ 0 0 0 ENST00000589636.5_1_17:40977217-40985356:-|nuORF ENST00000589636.5_1_17:40977217-40985356:-|nuORF ENST00000589636.5_1_17:40977217-40985356:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2802734375 2 602.333279 1202.652 NaN NaN NaN NaN NaN NaN NaN 146.65 1 146.65 146.15 147.15 0 0 0 0 0.22765 1 29328 29328 10.151 0.76745 1 33649 11592 22597 22612 33153 33153 0.05878426377466894 PKGPSVWRPQ 10 Unmodified _PKGPSVWRPQ_ 0 0 0 REV__ENST00000591433.5_1_19:1358605-1371443:+|nuORF REV__ENST00000591433.5_1_19:1358605-1371443:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3155517578125 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 147.28 1 142.28 141.78 142.78 -5 0 0 0 0.22588 1 28509 28509 9.3831 1.2276 1 + 33650 23334 22598 22613 33154 33154 0.055439428370846144 PKGSGHHHP 9 Unmodified _PKGSGHHHP_ 0 0 0 REV__ENST00000529225.5_1_11:111797899-111800548:+|nuORF REV__ENST00000529225.5_1_11:111797899-111800548:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7276916503906 2 477.23865 952.462747 -0.025579 -1.2207E-05 0.4953 0.00023637 0.46972 0.00022417 477.23882363121993 52.23 0.53203 52.23 51.898 52.43 0 35 14 4 0 0 0 0.45972 1 9941 9941 8.1555 1.9497 1 17216000 + 33651 22737 22599 22614 33155 33155 -0.01538601125207606 PKGVMITYEN 10 Unmodified _PKGVMITYEN_ 0 0 0 tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1 tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1 tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.315673828125 2 576.291899 1150.56925 NaN NaN NaN NaN NaN NaN NaN 140.57 1 140.57 140.07 141.07 0 0 0 0 0.22588 1 27992 27992 13.042 3.6593 1 33652 26205 22600 22615 33156 33156 -1.6514655499122455E-05 PKGVRVKET 9 Unmodified _PKGVRVKET_ 0 0 0 FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.D535Mfs*34|1|0.31|ENSG00000196924|chrX:154365224-154365224|C/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.21807861328125 3 338.541586 1012.60293 -0.2991 -0.00010126 0.14513 4.9132E-05 -0.15397 -5.2127E-05 338.54158835052743 44.819 0.81475 42.029 41.605 42.42 -2.79 67 22 4 0 0 0 0.60489 1 8489 8489 2.6312 0.13275 1 9376400 33653 7316 22601 22616 33157 33157 0.0971313808852301 PKHAMRYMVK 10 Unmodified _PKHAMRYMVK_ 0 0 0 REV__ENSG00000173269|ENST00000372027|MMRN2 REV__ENSG00000173269|ENST00000372027|MMRN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7491455078125 2 630.838828 1259.6631 NaN NaN NaN NaN NaN NaN NaN 75.485 1 75.485 74.985 75.985 0 0 0 0 0.22588 1 14661 14661 13.042 0.80181 1 + 33654 18347 22602 22617 33158 33158 0.043657891557131734 PKHFRFKY 8 Unmodified _PKHFRFKY_ 0 0 0 REV__nc|ENSG00000118058|Q03164-2|KMT2A REV__nc|ENSG00000118058|Q03164-2|KMT2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2108459472656 3 374.878421 1121.61343 -1.7799 -0.00066723 -3.4646 -0.0012988 -5.2445 -0.001966 375.21197059450895 18.907 0.34922 17.272 17.112 17.462 -1.6351 18 9 3 0 0 0 0.75713 1 2820 2820 6.2058 0.9089 1 329310 + 33655 15538 22603 22618 33159 33159 0.05749165533620726 PKHMLVVEAK 10 Unmodified _PKHMLVVEAK_ 0 0 0 ENSG00000168944|ENST00000306467|CEP120;CEP120|p.K738Rfs*29|2|0.21|ENSG00000168944|chr5:123377519-123377519|T/-|frameshift_variant;CEP120|p.L565*|1|0.38|ENSG00000168944|chr5:123385020-123385020|A/-|frameshift_variant;nc|ENSG00000168944|Q8N960-3|CEP120 ENSG00000168944|ENST00000306467|CEP120 ENSG00000168944|ENST00000306467|CEP120 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3349609375 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 48.211 1 45.261 44.761 45.761 -2.9499 0 0 0 0.22588 1 8820 8820 13.042 0 1 33656 5953 22604 22619 33160 33160 0.08394924421986616 PKHPQQQG 8 Unmodified _PKHPQQQG_ 0 0 0 ENST00000488315.5_1_7:149565341-149565602:-|nuORF ENST00000488315.5_1_7:149565341-149565602:-|nuORF ENST00000488315.5_1_7:149565341-149565602:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2402648925781 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 159.49 1 154.22 153.72 154.72 -5.2748 0 0 0 0.21486 1 30955 30955 5.2307 0 1 33657 10483 22605 22620 33161 33161 0.0046686329772001045 PKHVKKPK 8 Unmodified _PKHVKKPK_ 0 0 0 REV__DLX5|p.R138H|1|0.13|ENSG00000105880|chr7:97022312-97022312|C/T|missense_variant REV__DLX5|p.R138H|1|0.13|ENSG00000105880|chr7:97022312-97022312|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2316589355469 2 481.318912 960.62327 NaN NaN NaN NaN NaN NaN NaN 55.996 1 52.807 52.307 53.307 -3.1895 0 0 0 0.21486 1 10366 10366 5.2307 0 1 + 33658 13697 22606 22621 33162 33162 0.14138353538987758 PKIAKAPETRY 11 Unmodified _PKIAKAPETRY_ 0 0 0 REV__nc|ENSG00000241350|Q13670|PMS2P11 REV__nc|ENSG00000241350|Q13670|PMS2P11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24560546875 3 425.24695 1272.71902 NaN NaN NaN NaN NaN NaN NaN 165.42 1 165.42 164.92 165.92 0 0 0 0 0.22632 1 33568 33568 3.0723 0 1 + 33659 24288 22607 22622 33163 33163 0.09357036868550495 PKIDLPEVQI 10 Unmodified _PKIDLPEVQI_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;nc|ENSG00000075292|Q14966-5|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.A1154Qfs*28|1|0.42|ENSG00000075292|chr2:71422969-71422969|A/-|frameshift_variant;ENST00000494241.5_1_2:71631035-71653641:+|nuORF nc|ENSG00000075292|Q14966-3|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.336181640625 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 58.473 1 55.563 55.063 56.063 -2.9105 0 0 0 0.22588 1 11231 11231 11.495 1.4208 1 33660 1515 22608 22623 33164 33164 0.09047140854386271 PKIFVVVK 8 Unmodified _PKIFVVVK_ 0 0 0 REV__ENSG00000173221|ENST00000237858|GLRX REV__ENSG00000173221|ENST00000237858|GLRX MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650390625 3 310.544268 928.610974 -0.62282 -0.00019341 -0.12812 -3.9788E-05 -0.75094 -0.0002332 310.5442104828001 95.52 0.23978 95.52 95.456 95.695 0 10 6 2 0 0 0 0.89905 1 18720 18720 0.12286 0.12286 1 994640 + 33661 18341 22609 22624 33165 33165 0.1438131707593584 PKIKFFLKM 9 Unmodified _PKIKFFLKM_ 0 0 0 REV__ENSG00000125414|ENST00000245503|MYH2 REV__ENSG00000125414|ENST00000245503|MYH2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3189086914062 2 576.354105 1150.69366 NaN NaN NaN NaN NaN NaN NaN 170.87 1 170.87 170.37 171.37 0 0 0 0 0.23508 1 35161 35161 11.64 2.8949 1 + 33662 15813 22610 22625 33166 33166 0.1243389081244004 PKIQVVKRK 9 Unmodified _PKIQVVKRK_ 0 0 0 REV__tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1 REV__tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.77685546875 2 548.371675 1094.7288 0.3361 0.00018431 3.5584 0.0019514 3.8945 0.0021357 548.3756053324005 160.16 0.20703 160.16 160.07 160.27 0 8 5 2 0 0 0 0.65319 1 32154 32154 0.073264 0 1 1225100 + 33663 25200 22611 22626 33167 33167 0.18522269664595115 PKIQWRLQERL 11 Unmodified _PKIQWRLQERL_ 0 0 0 TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant;nc|ENSG00000103168|Q15572-2|TAF1C;ENSG00000103168|ENST00000566732|TAF1C;nc|ENSG00000103168|Q15572|TAF1C;ENST00000564774.5_1_16:84212549-84214094:-|nuORF;nc|ENSG00000103168|Q15572-5|TAF1C;ENST00000564208.5_1_16:84212549-84215086:-|nuORF;nc|ENSG00000103168|Q15572-4|TAF1C TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.442138671875 3 489.624532 1465.85177 NaN NaN NaN NaN NaN NaN NaN 165.75 1 160.77 160.27 161.27 -4.9811 0 0 0 0.22632 1 32427 32427 2.1236 1.6177 1 33664 2169 22612 22627 33168 33168 0.13747481325231092 PKIVKWDRDM 10 Unmodified _PKIVKWDRDM_ 0 0 0 ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 429.75677490234375 3 429.900786 1286.68053 0.11037 4.7449E-05 -0.19302 -8.2981E-05 -0.082652 -3.5532E-05 429.900710714019 62.735 0.66084 59.319 58.914 59.575 -3.4158 41 18 3 0 0 0 1.1218 1 11670 11670 10.151 10.124 1 3337000 33665 5741 22613 22628 33169 33169 0.04865407962370227 PKIVKWDRDM 10 Unmodified _PKIVKWDRDM_ 0 0 0 ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 429.900786 1286.68053 -0.17642 -7.5844E-05 0.028577 1.2285E-05 -0.14784 -6.3558E-05 429.90086114182975 59.278 0.57302 59.278 59.004 59.577 0 -0.0044222 0.00021355 NaN 10.151 45 15 4 NaN NaN NaN NaN 0 NaN NaN 0 6696400 33666 5741 22613 22628 0.04865407962370227 PKIVKWDRDM 10 Unmodified _PKIVKWDRDM_ 0 0 0 ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 429.900786 1286.68053 -0.082083 -3.5287E-05 -0.3123 -0.00013426 -0.39438 -0.00016955 429.9007415859078 62.233 0.59658 59.272 59.009 59.606 -2.9614 -0.010555 -0.00022608 NaN 10.151 52 16 5 NaN NaN NaN NaN 0 NaN NaN 0 7928700 33667 5741 22613 22628 0.04865407962370227 PKIVKWDRDM 10 Unmodified _PKIVKWDRDM_ 0 0 0 ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 429.900786 1286.68053 -0.011304 -4.8597E-06 -0.083946 -3.6089E-05 -0.095251 -4.0948E-05 429.9007893396502 62.5 0.66255 59.26 58.929 59.591 -3.2395 -0.021965 6.8426E-05 NaN 10.151 58 18 4 NaN NaN NaN NaN 0 NaN NaN 0 4724000 33668 5741 22613 22628 0.04865407962370227 PKIYVSRPGY 10 Unmodified _PKIYVSRPGY_ 0 0 0 REV__ENST00000568372.5_1_15:55651699-55664264:-|nuORF REV__ENST00000568372.5_1_15:55651699-55664264:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.250244140625 2 590.329673 1178.64479 NaN NaN NaN NaN NaN NaN NaN 108.27 1 108.27 107.77 108.77 0 0 0 0 0.22588 1 21290 21290 5.7319 0.97584 1 + 33669 23142 22614 22629 33170 33170 0.06261693777059918 PKKAKKEAY 9 Unmodified _PKKAKKEAY_ 0 0 0 REV__ENSG00000104529|ENST00000618139|EEF1D REV__ENSG00000104529|ENST00000618139|EEF1D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2658081054688 2 531.818941 1061.62333 0.17435 9.2723E-05 -0.13008 -6.9177E-05 0.044276 2.3547E-05 531.8188030339395 91.543 1.0452 87.735 87.267 88.312 -3.8083 91 29 5 0 0 0 0.69259 1 17477 17477 6.7232 0.99131 1 46811000 + 33670 14926 22615 22630 33171 33171 0.09498308748334239 PKKDTWPPP 9 Unmodified _PKKDTWPPP_ 0 0 0 REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2870483398438 2 533.290017 1064.56548 NaN NaN NaN NaN NaN NaN NaN 26.952 1 25.03 24.53 25.53 -1.9222 0 0 0 0.20699 1 4482 4482 21.537 0 1 + 33671 13707 22616 22631 33172 33172 0.03578046822894976 PKKETHIIE 9 Unmodified _PKKETHIIE_ 0 0 0 REV__nc|ENSG00000188171|Q68DY1-2|ZNF626 REV__nc|ENSG00000188171|Q68DY1-2|ZNF626 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.21160888671875 3 365.544996 1093.61316 -0.52827 -0.00019311 -0.045961 -1.6801E-05 -0.57423 -0.00020991 365.5449861852538 111.58 0.45278 107.16 106.96 107.41 -4.4231 20 12 3 0 0 0 0.35556 1 21997 21997 12.241 0 1 1328000 + 33672 19135 22617 22632 33173 33173 0.07009701023071102 PKKFTAVK 8 Unmodified _PKKFTAVK_ 0 0 0 REV__UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant REV__UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2483825683594 2 459.792195 917.569838 0.22502 0.00010346 0.31988 0.00014708 0.5449 0.00025054 459.79227370377055 21.467 0.33661 21.467 21.265 21.602 0 16 9 2 0 0 0 1.0011 1 3612 3612 4.3292 0 1 1086200 + 33673 17374 22618 22633 33174 33174 0.10775556036458056 PKKGESWFFRW 11 Unmodified _PKKGESWFFRW_ 0 0 0 SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant SEC16A|p.P2155Hfs*25|1|0.25|ENSG00000148396|chr9:136447664-136447664|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25750732421875 3 489.922578 1466.7459 0.53659 0.00026289 0.9202 0.00045083 1.4568 0.00071372 489.92300385542245 21.157 0.77525 19.683 19.35 20.125 -1.4742 42 21 3 0 0 0 0.65515 2 3590 3590;3605 3.0723 3.0409 1 1844700 33674 4742 22619 22634 33175;33176 33175 0.03120145479738312 PKKLLKIRV 9 Unmodified _PKKLLKIRV_ 0 0 0 REV__nc|ENSG00000169062|Q9H1J1-2|UPF3A REV__nc|ENSG00000169062|Q9H1J1-2|UPF3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7767944335938 2 547.892244 1093.76993 NaN NaN NaN NaN NaN NaN NaN 173.77 1 173.77 173.27 174.27 0 0 0 0 0.23508 1 35947 35947 1.8442 0 1 + 33675 18073 22620 22635 33177 33177 0.2268003070407758 PKKLVVEPKG 10 Unmodified _PKKLVVEPKG_ 0 0 0 ICAM2|p.A37V|1|0.32|ENSG00000108622|chr17:64005325-64005325|G/A|missense_variant ICAM2|p.A37V|1|0.32|ENSG00000108622|chr17:64005325-64005325|G/A|missense_variant ICAM2|p.A37V|1|0.32|ENSG00000108622|chr17:64005325-64005325|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7807006835938 2 547.850242 1093.68593 NaN NaN NaN NaN NaN NaN NaN 140.19 1 135.34 134.84 135.84 -4.8492 0 0 0 2.8426 1 27031 27031 0.26539 0 1 33676 11931 22621 22636 33178 33178 0.14283454816495578 PKKLVVEPKG 10 Unmodified _PKKLVVEPKG_ 0 0 0 ICAM2|p.A37V|1|0.32|ENSG00000108622|chr17:64005325-64005325|G/A|missense_variant ICAM2|p.A37V|1|0.32|ENSG00000108622|chr17:64005325-64005325|G/A|missense_variant ICAM2|p.A37V|1|0.32|ENSG00000108622|chr17:64005325-64005325|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.78759765625 2 547.850242 1093.68593 NaN NaN NaN NaN NaN NaN NaN 140.21 1 135.36 134.86 135.86 -4.8492 0 0 0 2.8426 1 27035 27035 0.26539 0.25212 1 33677 11931 22621 22636 33179 33179 0.14283454816495578 PKKLVVEPKG 10 Unmodified _PKKLVVEPKG_ 0 0 0 ICAM2|p.A37V|1|0.32|ENSG00000108622|chr17:64005325-64005325|G/A|missense_variant ICAM2|p.A37V|1|0.32|ENSG00000108622|chr17:64005325-64005325|G/A|missense_variant ICAM2|p.A37V|1|0.32|ENSG00000108622|chr17:64005325-64005325|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.78759765625 2 547.850242 1093.68593 NaN NaN NaN NaN NaN NaN NaN 140.23 1 135.38 134.88 135.88 -4.8492 0 0 0 0.22588 1 27039 27039 5.2969 2.0156 1 33678 11931 22621 22636 33180 33180 0.14283454816495578 PKKPHTPC 8 Unmodified _PKKPHTPC_ 0 0 0 nc|ENSG00000008086|O76039-1|CDKL5 nc|ENSG00000008086|O76039-1|CDKL5 nc|ENSG00000008086|O76039-1|CDKL5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 454.2546081542969 2 454.244555 906.474557 NaN NaN NaN NaN NaN NaN NaN 107.42 1 107.42 106.92 107.92 0 0 0 0 0.23487 1 21124 21124 0.12286 0 1 33679 12205 22622 22637 33181 33181 0.017578795737790642 PKKRKKEF 8 Unmodified _PKKRKKEF_ 0 0 0 REV__ENSG00000114857|ENST00000232978|NKTR REV__ENSG00000114857|ENST00000232978|NKTR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 354.2264709472656 3 354.225709 1059.6553 NaN NaN NaN NaN NaN NaN NaN 13.181 1 12.171 11.671 12.671 -1.0098 0 0 0 0.21486 1 1891 1891 0.40072 0 1 + 33680 15392 22623 22638 33182 33182 0.12785721222144275 PKKRRIKPKKV 11 Unmodified _PKKRRIKPKKV_ 0 0 0 REV__nc|ENSG00000137413|Q7Z7C8-2|TAF8 REV__nc|ENSG00000137413|Q7Z7C8-2|TAF8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 689.4827880859375 2 689.48008 1376.94561 NaN NaN NaN NaN NaN NaN NaN 171.15 1 171.15 170.65 171.65 0 0 0 0 0.23698 1 35243 35243 1.1933 0.84271 1 + 33681 24057 22624 22639 33183 33183 0.272212452181293 PKKTKKKTK 9 Unmodified _PKKTKKKTK_ 0 0 0 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77001953125 2 543.871508 1085.72846 NaN NaN NaN NaN NaN NaN NaN 13.881 1 13.881 13.381 14.381 0 0 0 0 0.23508 1 2034 2034 0.52476 0 1 33682 3934 22625 22640 33184 33184 0.189028499447204 PKKTLLQLKKR 11 Unmodified _PKKTLLQLKKR_ 0 0 0 REV__nc|ENSG00000186063|Q96BJ3-2|AIDA REV__nc|ENSG00000186063|Q96BJ3-2|AIDA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 677.1549682617188 2 676.958646 1351.90274 NaN NaN NaN NaN NaN NaN NaN 173.7 1 173.7 173.2 174.2 0 0 0 0 0.22632 1 35932 35932 0.50596 0.47975 1 + 33683 19008 22626 22641 33185 33185 0.24086430370039125 PKKVEKYRY 9 Unmodified _PKKVEKYRY_ 0 0 0 ENST00000487211.5_1_20:55043753-55046687:+|nuORF ENST00000487211.5_1_20:55043753-55046687:+|nuORF ENST00000487211.5_1_20:55043753-55046687:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 404.3144836425781 3 404.236274 1209.68699 NaN NaN NaN NaN NaN NaN NaN 13.498 1 12.325 11.825 12.825 -1.173 0 0 0 0.23508 1 1755 1755 0.23584 0 1 33684 10467 22627 22642 33186 33186 0.09053669185436775 PKKVVRLIAK 10 Unmodified _PKKVVRLIAK_ 0 0 0 ENSG00000138604|ENST00000261858|GLCE ENSG00000138604|ENST00000261858|GLCE ENSG00000138604|ENST00000261858|GLCE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3228149414062 2 576.402976 1150.7914 NaN NaN NaN NaN NaN NaN NaN 161.38 1 156.15 155.65 156.65 -5.2299 0 0 0 0.22588 1 31342 31342 1.4819 1.0236 1 33685 4184 22628 22643 33187 33187 0.22203415732792564 PKKVVRLIAK 10 Unmodified _PKKVVRLIAK_ 0 0 0 ENSG00000138604|ENST00000261858|GLCE ENSG00000138604|ENST00000261858|GLCE ENSG00000138604|ENST00000261858|GLCE MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3165283203125 2 576.402976 1150.7914 NaN NaN NaN NaN NaN NaN NaN 65.943 1 62.659 62.159 63.159 -3.2832 0 0 0 0.22588 1 12402 12402 0.40072 0 1 33686 4184 22628 22643 33188 33188 0.22203415732792564 PKKYAYWYQQK 11 Unmodified _PKKYAYWYQQK_ 0 0 0 nc|ENSG00000211669|A0A075B6K4|IGLV3-10;nc|ENSG00000211665|A0A075B6K0|IGLV3-16 nc|ENSG00000211669|A0A075B6K4|IGLV3-10 nc|ENSG00000211669|A0A075B6K4|IGLV3-10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 502.1220397949219 3 501.597871 1501.77178 -0.13178 -6.6099E-05 -0.32943 -0.00016524 -0.4612 -0.00023134 501.59773807073987 66.555 0.80825 66.555 66.205 67.014 0 65 22 4 0 0 0 0.82458 1 12813 12813 0.36667 0.037403 1 9687600 33687 12573 22629 22644 33189 33189 0.04096994931364861 PKKYAYWYQQK 11 Unmodified _PKKYAYWYQQK_ 0 0 0 nc|ENSG00000211669|A0A075B6K4|IGLV3-10;nc|ENSG00000211665|A0A075B6K0|IGLV3-16 nc|ENSG00000211669|A0A075B6K4|IGLV3-10 nc|ENSG00000211669|A0A075B6K4|IGLV3-10 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 501.597871 1501.77178 -0.13178 -6.6099E-05 -0.32943 -0.00016524 -0.4612 -0.00023134 501.59773807073987 66.555 0.80825 66.555 66.205 67.014 0 0.0073463 0.00027272 NaN 0.36667 65 22 4 NaN NaN NaN NaN 0 NaN NaN 0 9687600 33688 12573 22629 22644 0.04096994931364861 PKKYAYWYQQK 11 Unmodified _PKKYAYWYQQK_ 0 0 0 nc|ENSG00000211669|A0A075B6K4|IGLV3-10;nc|ENSG00000211665|A0A075B6K0|IGLV3-16 nc|ENSG00000211669|A0A075B6K4|IGLV3-10 nc|ENSG00000211669|A0A075B6K4|IGLV3-10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 501.597871 1501.77178 -0.10764 -5.3992E-05 -0.35697 -0.00017906 -0.46461 -0.00023305 501.597765578799 69.788 0.95357 66.608 66.153 67.107 -3.1796 0.061137 0.00023127 NaN 0.36667 85 26 4 NaN NaN NaN NaN 0 NaN NaN 0 17636000 33689 12573 22629 22644 0.04096994931364861 PKKYAYWYQQK 11 Unmodified _PKKYAYWYQQK_ 0 0 0 nc|ENSG00000211669|A0A075B6K4|IGLV3-10;nc|ENSG00000211665|A0A075B6K0|IGLV3-16 nc|ENSG00000211669|A0A075B6K4|IGLV3-10 nc|ENSG00000211669|A0A075B6K4|IGLV3-10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 501.597871 1501.77178 0.1772 8.8882E-05 -0.59485 -0.00029838 -0.41765 -0.00020949 501.5976577916766 70.119 0.80512 66.539 66.106 66.911 -3.5798 -0.0080535 -0.00012669 NaN 0.36667 74 22 4 NaN NaN NaN NaN 0 NaN NaN 0 9389800 33690 12573 22629 22644 0.04096994931364861 PKKYAYWYQQK 11 Unmodified _PKKYAYWYQQK_ 0 0 0 nc|ENSG00000211669|A0A075B6K4|IGLV3-10;nc|ENSG00000211665|A0A075B6K0|IGLV3-16 nc|ENSG00000211669|A0A075B6K4|IGLV3-10 nc|ENSG00000211669|A0A075B6K4|IGLV3-10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 501.597871 1501.77178 0.20889 0.00010478 -0.72713 -0.00036473 -0.51825 -0.00025995 501.5976116233279 69.954 0.97852 66.487 66.044 67.023 -3.467 -0.06043 -0.00032575 NaN 0.36667 97 27 5 NaN NaN NaN NaN 0 NaN NaN 0 10549000 33691 12573 22629 22644 0.04096994931364861 PKKYQKVA 8 Unmodified _PKKYQKVA_ 0 0 0 CTSW|p.A335Pfs*34|1|0.24|ENSG00000172543|chr11:65883402-65883402|G/-|frameshift_variant;ENSG00000172543|ENST00000307886|CTSW CTSW|p.A335Pfs*34|1|0.24|ENSG00000172543|chr11:65883402-65883402|G/-|frameshift_variant CTSW|p.A335Pfs*34|1|0.24|ENSG00000172543|chr11:65883402-65883402|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2439880371094 2 481.295102 960.575651 NaN NaN NaN NaN NaN NaN NaN 12.943 1 11.814 11.314 12.314 -1.1293 0 0 0 0.21486 1 1632 1632 2.3027 0 1 33692 753 22630 22645 33190 33190 0.09378654548129362 PKLCVFVT 8 Unmodified _PKLCVFVT_ 0 0 0 ENST00000583043.5_1_18:67684852-67806940:-|nuORF;nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN ENST00000583043.5_1_18:67684852-67806940:-|nuORF ENST00000583043.5_1_18:67684852-67806940:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76031494140625 2 453.759507 905.50446 NaN NaN NaN NaN NaN NaN NaN 13.071 1 12.061 11.561 12.561 -1.0098 0 0 0 0.21486 1 1868 1868 5.2307 0 1 33693 6455 22631 22646 33191 33191 0.047928185191153716 PKLDLHAI 8 Unmodified _PKLDLHAI_ 0 0 0 REV__nc|ENSG00000038382|O75962-2|TRIO REV__nc|ENSG00000038382|O75962-2|TRIO MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7611389160156 2 453.774003 905.533452 NaN NaN NaN NaN NaN NaN NaN 13.317 1 12.144 11.644 12.644 -1.173 0 0 0 0.21486 1 1715 1715 2.5775 0 1 + 33694 14040 22632 22647 33192 33192 0.076906791397505 PKLIKLMDE 9 Unmodified _PKLIKLMDE_ 0 0 0 REV__ENSG00000165355|ENST00000298097|FBXO33 REV__ENSG00000165355|ENST00000298097|FBXO33 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77001953125 2 543.81501 1085.61547 NaN NaN NaN NaN NaN NaN NaN 9.1001 1 8.3058 7.8058 8.8058 -0.79424 0 0 0 0.23508 1 1021 1021 0.52476 0 1 + 33695 17761 22633 22648 33193 33193 0.07608413436537376 PKLIVLVHSP 10 Unmodified _PKLIVLVHSP_ 0 0 0 REV__ENST00000428262.1_3_20:43514511-43516211:+|nuORF REV__ENST00000428262.1_3_20:43514511-43516211:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 551.8531494140625 2 551.852784 1101.69102 NaN NaN NaN NaN NaN NaN NaN 169.61 1 164.68 164.18 165.18 -4.9295 0 0 0 2.8426 1 33497 33497 0.20733 0.14346 1 + 33696 21588 22634 22649 33194 33194 0.14423758679117782 PKLKKKKKP 9 Unmodified _PKLKKKKKP_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant;CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7737426757812 2 547.892244 1093.76993 NaN NaN NaN NaN NaN NaN NaN 163.73 1 158.66 158.16 159.16 -5.0648 0 0 0 0.23508 1 31875 31875 1.8442 0 1 33697 514;513 22635 22650 33195 33195 0.2268003070407758 PKLKKLFRKL 10 Unmodified _PKLKKLFRKL_ 0 0 0 ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2 ENSG00000047617|ENST00000682330|ANO2 ENSG00000047617|ENST00000682330|ANO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 635.9205932617188 2 635.939725 1269.8649 NaN NaN NaN NaN NaN NaN NaN 173.09 1 168.21 167.71 168.71 -4.881 0 0 0 0.22588 1 34392 34392 0.40072 0 1 33698 1218 22636 22651 33196 33196 0.24075964175244735 PKLKKLKKRL 10 Unmodified _PKLKKLKKRL_ 0 0 0 DSCC1|p.L141R|1|0.34|ENSG00000136982|chr8:119850446-119850446|A/C|missense_variant DSCC1|p.L141R|1|0.34|ENSG00000136982|chr8:119850446-119850446|A/C|missense_variant DSCC1|p.L141R|1|0.34|ENSG00000136982|chr8:119850446-119850446|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 626.3394775390625 2 626.453 1250.89145 NaN NaN NaN NaN NaN NaN NaN 170.99 1 166.2 165.7 166.7 -4.7898 0 0 0 2.8426 1 34738 34738 0.0013812 0.0013812 1 33699 894 22637 22652 33197 33197 0.2760365306658059 PKLKKRKKKRK 11 Unmodified _PKLKKRKKKRK_ 0 0 0 REV__ENST00000216190.12_1_22:36906978-36907630:-|nuORF REV__ENST00000216190.12_1_22:36906978-36907630:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 480.4073791503906 3 480.012062 1437.01436 NaN NaN NaN NaN NaN NaN NaN 141.77 1 141.77 141.27 142.27 0 0 0 0 0.23698 1 28260 28260 0.073264 0.073264 1 + 33700 20011 22638 22653 33198 33198 0.3133290951784602 PKLKLKIII 9 Unmodified _PKLKLKIII_ 0 0 0 SAMD5|p.M133I|1|0.31|ENSG00000203727|chr6:147509327-147509327|G/T|missense_variant SAMD5|p.M133I|1|0.31|ENSG00000203727|chr6:147509327-147509327|G/T|missense_variant SAMD5|p.M133I|1|0.31|ENSG00000203727|chr6:147509327-147509327|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.266357421875 2 533.391545 1064.76854 NaN NaN NaN NaN NaN NaN NaN 150.92 1 145.69 145.19 146.19 -5.2365 0 0 0 0.23508 1 29250 29250 0.52476 0 1 33701 25633 22639 22654 33199 33199 0.23874396615315163 PKLKRQVLL 9 Unmodified _PKLKRQVLL_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7890014648438 2 547.874051 1093.73355 NaN NaN NaN NaN NaN NaN NaN 78.837 1 78.837 78.337 79.337 0 0 0 0 0.23508 1 15344 15344 2.0598 0 1 33702 5710 22640 22655 33200 33200 0.19043153807365343 PKLLHKDDL 9 Unmodified _PKLLHKDDL_ 0 0 0 REV__ENST00000487235.5_1_1:153921840-153927447:-|nuORF REV__ENST00000487235.5_1_1:153921840-153927447:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20172119140625 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 60.97 1 58.036 57.536 58.536 -2.9333 0 0 0 0.23508 1 11741 11741 7.609 0 1 + 33703 13586 22641 22656 33201 33201 0.0825400488570267 PKLLIALLV 9 Unmodified _PKLLIALLV_ 0 0 0 ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8 ENSG00000006071|ENST00000389817|ABCC8 ENSG00000006071|ENST00000389817|ABCC8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.34857177734375 2 490.349346 978.684139 NaN NaN NaN NaN NaN NaN NaN 169.6 1 164.72 164.22 165.22 -4.873 0 0 0 0.23508 1 33506 33506 0.52476 0 1 33704 1004 22642 22657 33202 33202 0.19394445798548077 PKLLKRLFL 9 Unmodified _PKLLKRLFL_ 0 0 0 ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-3|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 564.3875122070312 2 564.386794 1126.75904 NaN NaN NaN NaN NaN NaN NaN 43.42 1 40.701 40.201 41.201 -2.7191 0 0 0 0.23508 1 8140 8140 0.52476 0 1 33705 4834 22643 22658 33203 33203 0.20072628329785402 PKLLLLLKR 9 Unmodified _PKLLLLLKR_ 0 0 0 REV__ENST00000416673.6_1_2:114369763-114384446:-|nuORF REV__ENST00000416673.6_1_2:114369763-114384446:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7798461914062 2 547.394619 1092.77469 NaN NaN NaN NaN NaN NaN NaN 13.422 1 12.412 11.912 12.912 -1.0098 0 0 0 0.23508 1 1944 1944 0.52476 0 1 + 33706 21471 22644 22659 33204 33204 0.2320091484684781 PKLLLLLPLIL 11 Unmodified _PKLLLLLPLIL_ 0 0 0 REV__ENSG00000280021|ENST00000624103|OR51F1 REV__ENSG00000280021|ENST00000624103|OR51F1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 623.4246826171875 2 623.44906 1244.88357 NaN NaN NaN NaN NaN NaN NaN 176.57 1 176.57 176.07 177.07 0 0 0 0 0.22632 1 36578 36578 0 0 1 + 33707 19952 22645 22660 33205 33205 0.27092081026466985 PKLLPGMTKLY 11 Unmodified _PKLLPGMTKLY_ 0 0 0 REV__ENST00000276569.7_1_8:66516226-66516463:-|nuORF REV__ENST00000276569.7_1_8:66516226-66516463:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.759765625 2 630.872859 1259.73117 NaN NaN NaN NaN NaN NaN NaN 131.07 1 126.29 125.79 126.79 -4.7725 0 0 0 0.23379 1 25230 25230 5.2969 0.96765 1 + 33708 20294 22646 22661 33206 33206 0.11168937287402514 PKLNRFLLLF 10 Unmodified _PKLNRFLLLF_ 0 0 0 ENSG00000198856|ENST00000361564|OSTC;nc|ENSG00000198856|Q9NRP0-2|OSTC ENSG00000198856|ENST00000361564|OSTC ENSG00000198856|ENST00000361564|OSTC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7688598632812 2 630.894983 1259.77541 NaN NaN NaN NaN NaN NaN NaN 168.88 1 164 163.5 164.5 -4.873 0 0 0 0.22588 1 33327 33327 6.2058 0 1 33709 7510 22647 22662 33207 33207 0.15591709495879513 PKLRELLII 9 Unmodified _PKLRELLII_ 0 0 0 DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant;nc|ENSG00000079785|Q92499-3|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1 DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant DDX1|p.R400Dfs*4|1|0.32|ENSG00000079785|chr2:15618258-15618258|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.779541015625 2 547.868434 1093.72232 NaN NaN NaN NaN NaN NaN NaN 68.07 1 64.962 64.462 65.462 -3.1086 0 0 0 0.23508 1 13213 13213 0.52476 0.066424 1 33710 797 22648 22663 33208 33208 0.17920331713230553 PKLTLLDL 8 Unmodified _PKLTLLDL_ 0 0 0 ENSG00000181754|ENST00000369864|AMIGO1 ENSG00000181754|ENST00000369864|AMIGO1 ENSG00000181754|ENST00000369864|AMIGO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.27655029296875 2 456.791861 911.569169 0.27197 0.00012423 0.086072 3.9317E-05 0.35804 0.00016355 456.79184844218867 147.41 0.90944 147.41 146.94 147.85 0 59 25 3 0 0 0 8448 1 29441 29441 10.074 0 1 14011000 33711 6739 22649 22664 33209 33209 0.10984716596760791 PKLTLLDL 8 Unmodified _PKLTLLDL_ 0 0 0 ENSG00000181754|ENST00000369864|AMIGO1 ENSG00000181754|ENST00000369864|AMIGO1 ENSG00000181754|ENST00000369864|AMIGO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 457.79473876953125 2 456.791861 911.569169 0.35428 0.00016183 -0.17602 -8.0407E-05 0.17826 8.1427E-05 456.79170896182575 151.98 0.81422 146.81 146.42 147.23 -5.1759 53 22 3 0 0 0 8448 1 29520 29520 10.074 9.3925 1 8836600 33712 6739 22649 22664 33210 33210 0.10984716596760791 PKLVVKFVL 9 Unmodified _PKLVVKFVL_ 0 0 0 nc|ENSG00000134376|P82279-4|CRB1;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;CRB1|p.P1400Lfs*6|1|0.36|ENSG00000134376|chr1:197477853-197477853|C/-|frameshift_variant;ENSG00000134376|ENST00000367400|CRB1 nc|ENSG00000134376|P82279-4|CRB1 nc|ENSG00000134376|P82279-4|CRB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2788696289062 2 521.854796 1041.69504 0.25181 0.00013141 0.3057 0.00015953 0.55752 0.00029094 522.3564206329097 85.01 0.4128 85.01 84.839 85.252 0 17 11 2 0 0 0 0.79297 1 16564 16564 2.0598 0 1 1612700 33713 722 22650 22665 33211 33211 0.17585848172848273 PKLVVKFVL 9 Unmodified _PKLVVKFVL_ 0 0 0 nc|ENSG00000134376|P82279-4|CRB1;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;CRB1|p.P1400Lfs*6|1|0.36|ENSG00000134376|chr1:197477853-197477853|C/-|frameshift_variant;ENSG00000134376|ENST00000367400|CRB1 nc|ENSG00000134376|P82279-4|CRB1 nc|ENSG00000134376|P82279-4|CRB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2571411132812 2 521.854796 1041.69504 -0.32137 -0.00016771 1.023 0.00053384 0.7016 0.00036614 521.8553237480171 89.031 0.6337 85.238 84.839 85.473 -3.7926 25 17 2 0 0 0 0.87888 1 17358 17358 0.52476 0 1 1121000 33714 722 22650 22665 33212 33212 0.17585848172848273 PKLVVKFVL 9 Unmodified _PKLVVKFVL_ 0 0 0 nc|ENSG00000134376|P82279-4|CRB1;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;CRB1|p.P1400Lfs*6|1|0.36|ENSG00000134376|chr1:197477853-197477853|C/-|frameshift_variant;ENSG00000134376|ENST00000367400|CRB1 nc|ENSG00000134376|P82279-4|CRB1 nc|ENSG00000134376|P82279-4|CRB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2801513671875 2 521.854796 1041.69504 0.26289 0.00013719 0.13403 6.9946E-05 0.39693 0.00020714 521.8547191079244 88.872 0.53083 85.121 84.844 85.375 -3.7501 17 14 2 0 0 0 0.87888 1 16992 16992 2.0598 2.0598 1 1104200 33715 722 22650 22665 33213 33213 0.17585848172848273 PKLVVKFVL 9 Unmodified _PKLVVKFVL_ 0 0 0 nc|ENSG00000134376|P82279-4|CRB1;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;CRB1|p.P1400Lfs*6|1|0.36|ENSG00000134376|chr1:197477853-197477853|C/-|frameshift_variant;ENSG00000134376|ENST00000367400|CRB1 nc|ENSG00000134376|P82279-4|CRB1 nc|ENSG00000134376|P82279-4|CRB1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.854796 1041.69504 0.25181 0.00013141 0.3057 0.00015953 0.55752 0.00029094 522.3564206329097 85.01 0.4128 85.01 84.839 85.252 0 -0.1132 -0.00018977 NaN 2.0598 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1612700 33716 722 22650 22665 0.17585848172848273 PKLYKKAHLY 10 Unmodified _PKLYKKAHLY_ 0 0 0 REV__CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant REV__CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7533569335938 2 630.876791 1259.73903 NaN NaN NaN NaN NaN NaN NaN 135.68 1 130.78 130.28 131.28 -4.8951 0 0 0 0.22588 1 26065 26065 9.3831 3.1773 1 + 33717 13261 22651 22666 33214 33214 0.11954832599190013 PKLYQLQVP 9 Unmodified _PKLYQLQVP_ 0 0 0 APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant;APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant;APOB|p.G1921Efs*13|1|0.19|ENSG00000084674|chr2:21011106-21011106|C/-|frameshift_variant;APOB|p.Y2149Vfs*2|2|0.29|ENSG00000084674|chr2:21010424-21010425|-/T|frameshift_variant;APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant;APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7884521484375 2 543.321317 1084.62808 0.33671 0.00018294 1.7036 0.00092561 2.0403 0.0011085 543.824908025243 138.08 0.2108 138.08 137.94 138.15 0 7 5 2 0 0 0 0.49624 1 27397 27397 1.2148 0 1 2197800 33718 185;184 22652 22667 33215 33215 0.08915192891095103 PKMGIGMQW 9 Unmodified _PKMGIGMQW_ 0 0 0 REV__KSR2|p.T888I|1|0.14|ENSG00000171435|chr12:117471240-117471240|G/A|missense_variant REV__KSR2|p.T888I|1|0.14|ENSG00000171435|chr12:117471240-117471240|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7008056640625 2 524.259348 1046.50414 -0.18208 -9.5455E-05 -0.4543 -0.00023817 -0.63638 -0.00033363 524.2590593925153 44.893 0.74252 42.103 41.677 42.42 -2.79 61 20 4 0 0 0 0.85111 1 8357 8357 6.7232 3.4419 1 6940900 + 33719 23743 22653 22668 33216 33216 -0.017249244723871016 PKMKLRIWH 9 Unmodified _PKMKLRIWH_ 0 0 0 REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 604.8316650390625 2 604.857878 1207.7012 NaN NaN NaN NaN NaN NaN NaN 10.735 1 9.6689 9.1689 10.169 -1.0664 0 0 0 0.23508 1 1178 1178 0 0 1 + 33720 14319 22654 22669 33217 33217 0.10566043132712366 PKNESLETY 9 Unmodified _PKNESLETY_ 0 0 0 nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1 nc|ENSG00000143153|P05026-2|ATP1B1 nc|ENSG00000143153|P05026-2|ATP1B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26611328125 2 540.764029 1079.5135 0.12467 6.7419E-05 -3.4583 -0.0018701 -3.3336 -0.0018027 540.7639987867514 88.113 1.0098 84.321 83.577 84.587 -3.7926 49 27 3 0 0 0 0.6329 1 17131 17131 10.824 1.4408 1 3934600 33721 4457 22655 22670 33218 33218 -0.02307161381509104 PKNPKACEDGW 11 Unmodified _PKNPKACEDGW_ 0 0 0 REV__ENSG00000087128|ENST00000305363|TMPRSS11E REV__ENSG00000087128|ENST00000305363|TMPRSS11E MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7652587890625 2 622.790055 1243.56556 NaN NaN NaN NaN NaN NaN NaN 148.14 1 143.43 142.93 143.93 -4.7095 0 0 0 0.23429 1 29412 29412 4.897 1.3005 1 + 33722 14494 22656 22671 33219 33219 -0.04648321239415054 PKPFVAVVV 9 Unmodified _PKPFVAVVV_ 0 0 0 REV__nc|ENSG00000099250|O14786-3|NRP1 REV__nc|ENSG00000099250|O14786-3|NRP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7239685058594 2 478.302396 954.590239 NaN NaN NaN NaN NaN NaN NaN 159.21 1 159.21 158.71 159.71 0 0 0 0 0.23508 1 31971 31971 3.9444 0 1 + 33723 14630 22657 22672 33220 33220 0.11112726696285335 PKPPAVLFLP 10 Unmodified _PKPPAVLFLP_ 0 0 0 REV__ENST00000503574.1_1_4:109541889-109541958:+|nuORF REV__ENST00000503574.1_1_4:109541889-109541958:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2159118652344 3 360.226827 1077.65865 NaN NaN NaN NaN NaN NaN NaN 59.41 1 56.499 55.999 56.999 -2.9105 0 0 0 0.22588 1 11422 11422 5.4027 1.2132 1 + 33724 22451 22658 22673 33221 33221 0.12292971276133358 PKPPAVLFLP 10 Unmodified _PKPPAVLFLP_ 0 0 0 REV__ENST00000503574.1_1_4:109541889-109541958:+|nuORF REV__ENST00000503574.1_1_4:109541889-109541958:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2014465332031 3 360.226827 1077.65865 NaN NaN NaN NaN NaN NaN NaN 59.799 1 56.575 56.075 57.075 -3.2237 0 0 0 0.22588 1 11177 11177 5.4027 1.2132 1 + 33725 22451 22658 22673 33222 33222 0.12292971276133358 PKPPEYVTI 9 Unmodified _PKPPEYVTI_ 0 0 0 REV__nc|ENSG00000105388|P06731-2|CEACAM5 REV__nc|ENSG00000105388|P06731-2|CEACAM5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.258544921875 2 522.292225 1042.5699 NaN NaN NaN NaN NaN NaN NaN 82.28 1 78.723 78.223 79.223 -3.557 0 0 0 0.23508 1 16079 16079 11.64 3.047 1 + 33726 23992 22659 22674 33223 33223 0.050315112458065414 PKPRRRRRHW 10 Unmodified _PKPRRRRRHW_ 0 0 0 ENST00000344686.6_1_17:43367939-43368083:-|nuORF ENST00000344686.6_1_17:43367939-43368083:-|nuORF ENST00000344686.6_1_17:43367939-43368083:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78546142578125 3 482.292222 1443.85484 -1.6982 -0.00081902 -2.5792 -0.0012439 -4.2774 -0.002063 482.29035736625605 12.858 0.10074 11.737 11.687 11.788 -1.1206 4 2 2 0 0 0 0.91149 1 1570 1570 0.13989 0.04505 1 107440 33727 8892 22660 22675 33224 33224 0.15066214013245371 PKQREADEA 9 Unmodified _PKQREADEA_ 0 0 0 REV__ENSG00000197312|ENST00000480945|DDI2 REV__ENSG00000197312|ENST00000480945|DDI2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.259033203125 2 522.259445 1042.50434 NaN NaN NaN NaN NaN NaN NaN 108.67 1 104.35 103.85 104.85 -4.32 0 0 0 0.23508 1 21412 21412 9.3831 1.2276 1 + 33728 19322 22661 22676 33225 33225 -0.015215099471788562 PKQREADEA 9 Unmodified _PKQREADEA_ 0 0 0 REV__ENSG00000197312|ENST00000480945|DDI2 REV__ENSG00000197312|ENST00000480945|DDI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.260009765625 2 522.259445 1042.50434 NaN NaN NaN NaN NaN NaN NaN 108.63 1 104.45 103.95 104.95 -4.1826 0 0 0 0.23508 1 20903 20903 9.3831 0 1 + 33729 19322 22661 22676 33226 33226 -0.015215099471788562 PKQRELAAAPA 11 Unmodified _PKQRELAAAPA_ 0 0 0 ENST00000439491.2_1_7:5338995-5342941:+|nuORF ENST00000439491.2_1_7:5338995-5342941:+|nuORF ENST00000439491.2_1_7:5338995-5342941:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3326416015625 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 154.82 1 149.53 149.03 150.03 -5.2854 0 0 0 0.23018 1 30023 30023 8.1555 0 1 33730 9873 22662 22677 33227 33227 0.0765590814596635 PKQTLEVLK 9 Unmodified _PKQTLEVLK_ 0 0 0 REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 353.8942565917969 3 352.553492 1054.63865 0.048965 1.7263E-05 -0.0087873 -3.098E-06 0.040178 1.4165E-05 352.5534438465465 38.759 0.84 36.318 35.845 36.685 -2.4419 76 23 4 0 0 0 0.5428 1 6926 6926 4.897 0 1 35982000 + 33731 16251 22663 22678 33228 33228 0.11351175545519254 PKQTLEVLK 9 Unmodified _PKQTLEVLK_ 0 0 0 REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 352.553492 1054.63865 -0.24498 -8.6369E-05 0.29764 0.00010493 0.052659 1.8565E-05 352.55355333799235 36.372 0.85255 36.372 36.105 36.957 0 0.094474 -0.00012404 NaN 4.897 69 23 4 NaN NaN NaN NaN 0 NaN NaN 0 53252000 + 33732 16251 22663 22678 0.11351175545519254 PKQTLEVLK 9 Unmodified _PKQTLEVLK_ 0 0 0 REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 352.553492 1054.63865 -0.59178 -0.00020863 0.69755 0.00024592 0.10577 3.729E-05 352.5536994010907 38.758 0.73379 36.209 35.837 36.571 -2.5491 -0.068028 0.00029893 NaN 4.897 77 20 5 NaN NaN NaN NaN 0 NaN NaN 0 40066000 + 33733 16251 22663 22678 0.11351175545519254 PKQTLEVLK 9 Unmodified _PKQTLEVLK_ 0 0 0 REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 352.553492 1054.63865 0.048965 1.7263E-05 -0.0087873 -3.098E-06 0.040178 1.4165E-05 352.5534438465465 38.759 0.84 36.318 35.845 36.685 -2.4419 0.040103 -0.00044813 NaN 4.897 76 23 4 NaN NaN NaN NaN 0 NaN NaN 0 35982000 + 33734 16251 22663 22678 0.11351175545519254 PKQTLEVLK 9 Unmodified _PKQTLEVLK_ 0 0 0 REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 352.553492 1054.63865 -0.51081 -0.00018009 0.6589 0.0002323 0.14809 5.2209E-05 352.55367158334957 38.616 0.77501 36.211 35.844 36.619 -2.4049 -0.066548 0.00025805 NaN 4.897 69 21 4 NaN NaN NaN NaN 0 NaN NaN 0 29101000 + 33735 16251 22663 22678 0.11351175545519254 PKQVLERMWRK 11 Unmodified _PKQVLERMWRK_ 0 0 0 L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|1|1|sense L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|1|1|sense L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|1|1|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 736.1028442382812 2 735.921738 1469.82892 NaN NaN NaN NaN NaN NaN NaN 167.08 1 167.08 166.58 167.58 0 0 0 0 0.22632 1 34119 34119 5.4027 5.2307 1 33736 12067 22664 22679 33229 33229 0.1128013893608113 PKQWPFQFLRH 11 Unmodified _PKQWPFQFLRH_ 0 0 0 ENST00000261590.12_1_18:29116258-29116342:+|nuORF ENST00000261590.12_1_18:29116258-29116342:+|nuORF ENST00000261590.12_1_18:29116258-29116342:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.40234375 2 742.401496 1482.78844 NaN NaN NaN NaN NaN NaN NaN 62.559 1 59.598 59.098 60.098 -2.9614 0 0 0 0.23698 1 12072 12072 1.1933 0.79263 1 33737 8301 22665 22680 33230 33230 0.06635540607976509 PKRGRRKTK 9 Unmodified _PKRGRRKTK_ 0 0 0 REV__ENST00000305366.7_1_3:149095174-149095441:-|nuORF REV__ENST00000305366.7_1_3:149095174-149095441:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.0930480957031 3 376.247507 1125.72069 NaN NaN NaN NaN NaN NaN NaN 177.22 1 172.35 171.85 172.85 -4.8739 0 0 0 0.23508 1 35266 35266 0.96228 0.18574 1 + 33738 20434 22666 22681 33231 33231 0.16286135467817076 PKRKLRILQ 9 Unmodified _PKRKLRILQ_ 0 0 0 ITPKB|p.A127P|1|0.09|ENSG00000143772|chr1:226737080-226737080|C/G|missense_variant ITPKB|p.A127P|1|0.09|ENSG00000143772|chr1:226737080-226737080|C/G|missense_variant ITPKB|p.A127P|1|0.09|ENSG00000143772|chr1:226737080-226737080|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3326416015625 2 576.3904 1150.76625 NaN NaN NaN NaN NaN NaN NaN 138.29 1 133.45 132.95 133.95 -4.84 0 0 0 0.23508 1 26649 26649 1.8442 1.2427 1 33739 11966 22667 22682 33232 33232 0.19689360930215116 PKRLPLPLI 9 Unmodified _PKRLPLPLI_ 0 0 0 REV__ENST00000496704.1_1_2:130897130-130898075:-|nuORF;REV__ENSG00000163040|ENST00000409856|CCDC74A REV__ENST00000496704.1_1_2:130897130-130898075:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6841430664062 2 523.85787 1045.70119 NaN NaN NaN NaN NaN NaN NaN 172.81 1 167.93 167.43 168.43 -4.881 0 0 0 0.23508 1 34326 34326 0.52476 0 1 + 33740 22393;17092 22668 22683 33233 33233 0.18016366404367545 PKRPLGVR 8 Unmodified _PKRPLGVR_ 0 0 0 REV__ENST00000586299.1_1_17:76673268-76673652:-|nuORF REV__ENST00000586299.1_1_17:76673268-76673652:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5430603027344 2 461.800886 921.587219 NaN NaN NaN NaN NaN NaN NaN 155.69 1 155.69 155.19 156.19 0 0 0 0 0.21486 1 31214 31214 2.3027 1.5091 1 + 33741 23265 22669 22684 33234 33234 0.12328896362123487 PKRREALI 8 Unmodified _PKRREALI_ 0 0 0 REV__ENST00000493234.1_1_11:1955154-1956368:+|nuORF REV__ENST00000493234.1_1_11:1955154-1956368:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 327.996337890625 3 328.210059 981.608348 -0.49515 -0.00016251 0.70407 0.00023108 0.20892 6.857E-05 328.21026873889485 18.723 0.66037 18.723 18.335 18.996 0 46 18 3 0 0 0 1.0282 1 2969 2969 0.40072 0 1 4766000 + 33742 16019 22670 22685 33235 33235 0.11680861670993181 PKRREALI 8 Unmodified _PKRREALI_ 0 0 0 REV__ENST00000493234.1_1_11:1955154-1956368:+|nuORF REV__ENST00000493234.1_1_11:1955154-1956368:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 328.210059 981.608348 -0.014858 -4.8766E-06 -0.0057669 -1.8928E-06 -0.020625 -6.7694E-06 328.2100392814995 20.241 0.63043 18.845 18.516 19.146 -1.3966 0.056701 -0.00033094 NaN 0.40072 50 17 4 NaN NaN NaN NaN 0 NaN NaN 0 3083600 + 33743 16019 22670 22685 0.11680861670993181 PKRREALI 8 Unmodified _PKRREALI_ 0 0 0 REV__ENST00000493234.1_1_11:1955154-1956368:+|nuORF REV__ENST00000493234.1_1_11:1955154-1956368:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 328.210059 981.608348 -0.26502 -8.6981E-05 0.38736 0.00012714 0.12234 4.0154E-05 328.2101653020412 20.122 0.67006 18.797 18.416 19.086 -1.3251 0.0086625 5.6141E-05 NaN 0.40072 48 18 4 NaN NaN NaN NaN 0 NaN NaN 0 2323300 + 33744 16019 22670 22685 0.11680861670993181 PKRVRRQIHA 10 Unmodified _PKRVRRQIHA_ 0 0 0 ENSG00000173402|ENST00000308775|DAG1;DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7658081054688 2 630.891629 1259.76871 NaN NaN NaN NaN NaN NaN NaN 171.91 1 167.03 166.53 167.53 -4.873 0 0 0 0.22588 1 34083 34083 6.7232 1.8262 1 33745 6291 22671 22686 33236 33236 0.1492120938789867 PKSGGLLC 8 Unmodified _PKSGGLLC_ 0 0 0 REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7126159667969 2 387.712556 773.41056 -0.067112 -2.602E-05 0.40807 0.00015821 0.34095 0.00013219 387.7126218295148 30.237 0.80643 30.237 29.919 30.725 0 47 22 3 0 0 0 8448 1 5384 5384 3.5871 3.4642 1 4281500 + 33746 19302 22672 22687 33237 33237 0.01479099416826557 PKSKKAVSRKD 11 Unmodified _PKSKKAVSRKD_ 0 0 0 nc|ENSG00000102103|O60828-5|PQBP1;ENSG00000102103|ENST00000447146|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7750854492188 2 622.377686 1242.74082 0.29784 0.00018537 -1.3483 -0.00083918 -1.0505 -0.00065381 622.3765490558709 136.4 0.20779 131.51 131.38 131.59 -4.8951 8 5 2 0 0 0 0.96095 1 26187 26187 6.6304 5.5589 1 1798600 33747 2108 22673 22688 33238 33238 0.12915841617132173 PKSQPFPSTY 10 Unmodified _PKSQPFPSTY_ 0 0 0 GALC|p.T518Yfs*4|1|0.3|ENSG00000054983|chr14:87945671-87945672|-/A|frameshift_variant;nc|ENSG00000054983|P54803-5|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC GALC|p.T518Yfs*4|1|0.3|ENSG00000054983|chr14:87945671-87945672|-/A|frameshift_variant GALC|p.T518Yfs*4|1|0.3|ENSG00000054983|chr14:87945671-87945672|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3272705078125 2 576.290214 1150.56587 0.29363 0.00016922 1.7805 0.0010261 2.0741 0.0011953 576.2914238146107 132.19 0.30615 132.19 131.92 132.23 0 10 8 2 0 0 0 0.70381 1 26113 26113 10.8 0.72558 1 2817300 33748 1270 22674 22689 33239 33239 -0.0033857824789720325 PKSVSLSED 9 Unmodified _PKSVSLSED_ 0 0 0 REV__ENSG00000183307|ENST00000331437|TMEM121B REV__ENSG00000183307|ENST00000331437|TMEM121B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2436828613281 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 31.697 1 29.671 29.171 30.171 -2.0264 0 0 0 0.23508 1 5478 5478 10.074 0 1 + 33749 18827 22675 22690 33240 33240 -0.005428329272831434 PKSYWISGFFF 11 Unmodified _PKSYWISGFFF_ 0 0 0 ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2317810058594 3 460.23253 1377.67576 NaN NaN NaN NaN NaN NaN NaN 33.873 1 31.556 31.056 32.056 -2.3175 0 0 0 0.22632 1 6206 6206 0.026206 0 1 33750 2855 22676 22691 33241 33241 0.002028470912591729 PKTAFPPRSEM 11 Unmodified _PKTAFPPRSEM_ 0 0 0 REV__ENST00000427737.5_1_2:220142699-220142855:-|nuORF REV__ENST00000427737.5_1_2:220142699-220142855:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7779541015625 2 630.823898 1259.63324 NaN NaN NaN NaN NaN NaN NaN 123.62 1 119.03 118.53 119.53 -4.5926 0 0 0 0.23266 1 23796 23796 6.1918 0.89496 1 + 33751 21583 22677 22692 33242 33242 0.013811286914005905 PKTALRQRHKE 11 Unmodified _PKTALRQRHKE_ 0 0 0 nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant;PIEZO2|p.Y2489Sfs*7|1|0.06|ENSG00000154864|chr18:10680346-10680347|-/GG|frameshift_variant;PIEZO2|p.L2716Ffs*33|1|0.12|ENSG00000154864|chr18:10671638-10671639|-/A|frameshift_variant nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5-2|PIEZO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.2120056152344 4 341.70338 1362.78442 -0.93191 -0.00031844 0.65725 0.00022458 -0.27466 -9.3854E-05 341.70357961393773 13.97 0.31571 12.856 12.734 13.049 -1.1142 22 8 4 0 0 0 0.65515 1 2075 2075 3.0723 0 1 1341800 33752 5030 22678 22693 33243 33243 0.11753451114282143 PKTALRQRHKE 11 Unmodified _PKTALRQRHKE_ 0 0 0 nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant;PIEZO2|p.Y2489Sfs*7|1|0.06|ENSG00000154864|chr18:10680346-10680347|-/GG|frameshift_variant;PIEZO2|p.L2716Ffs*33|1|0.12|ENSG00000154864|chr18:10671638-10671639|-/A|frameshift_variant nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5-2|PIEZO2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 341.70338 1362.78442 -0.66422 -0.00022696 0.45465 0.00015536 -0.20957 -7.161E-05 341.7035017770468 13.946 0.34683 12.773 12.69 13.037 -1.173 -0.15377 -7.6081E-07 NaN 3.0723 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1608200 33753 5030 22678 22693 0.11753451114282143 PKTLIEYSL 9 Unmodified _PKTLIEYSL_ 0 0 0 sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1;sp|F5HGT1|MCP_HCMVMMajorcapsidproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=MCPPE=3SV=1 sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1 sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2781982421875 2 532.305332 1062.59611 0.42944 0.00022859 -0.45548 -0.00024245 -0.026037 -1.386E-05 532.3050079265336 120.03 1.0705 115.57 114.99 116.06 -4.467 76 30 3 0 0 0 0.67531 1 23004 23004 7.9102 0 1 19232000 33754 25740 22679 22694 33244 33244 0.0673178041729443 PKTRHSGF 8 Unmodified _PKTRHSGF_ 0 0 0 nc|ENSG00000012061|P07992-3|ERCC1 nc|ENSG00000012061|P07992-3|ERCC1 nc|ENSG00000012061|P07992-3|ERCC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2589416503906 2 465.251226 928.487899 NaN NaN NaN NaN NaN NaN NaN 111.84 1 111.84 111.34 112.34 0 0 0 0 0.21486 1 22003 22003 9.3474 2.0582 1 33755 12208 22680 22695 33245 33245 0.02079453677379206 PKTYKLSLP 9 Unmodified _PKTYKLSLP_ 0 0 0 HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|25|1|sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|25|1|sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|25|1|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6904907226562 2 523.815867 1045.61718 NaN NaN NaN NaN NaN NaN NaN 14.487 1 13.373 12.873 13.873 -1.1142 0 0 0 0.23508 1 2174 2174 1.8442 0.19162 1 33756 11895 22681 22696 33246 33246 0.0961979051680828 PKVALLNIG 9 Unmodified _PKVALLNIG_ 0 0 0 tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 309.86956787109375 3 308.867411 923.580402 -0.35534 -0.00010975 0.45074 0.00013922 0.095401 2.9466E-05 308.8674846340451 39.24 0.89642 39.24 38.856 39.752 0 70 25 4 0 0 0 0.45972 1 7275 7275 8.1555 0 1 8265800 33757 26366 22682 22697 33247 33247 0.11555538690902267 PKVALLNIG 9 Unmodified _PKVALLNIG_ 0 0 0 tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 308.867411 923.580402 -0.44041 -0.00013603 0.38922 0.00012022 -0.051194 -1.5812E-05 308.86746564416933 41.893 1.0308 39.223 38.641 39.672 -2.6701 0.02944 1.0894E-05 NaN 8.1555 90 29 4 NaN NaN NaN NaN 0 NaN NaN 0 16412000 33758 26366 22682 22697 0.11555538690902267 PKVALLNIG 9 Unmodified _PKVALLNIG_ 0 0 0 tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 308.867411 923.580402 -0.65086 -0.00020103 0.57885 0.00017879 -0.07201 -2.2242E-05 308.8675421813954 41.77 0.95023 39.164 38.627 39.577 -2.606 -0.029824 0.00018661 NaN 8.1555 78 26 4 NaN NaN NaN NaN 0 NaN NaN 0 11794000 33759 26366 22682 22697 0.11555538690902267 PKVASGCL 8 Unmodified _PKVASGCL_ 0 0 0 ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB ENST00000475214.5_1_3:135974226-136045892:+|nuORF ENST00000475214.5_1_3:135974226-136045892:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7125549316406 2 387.712556 773.41056 -0.067112 -2.602E-05 0.40807 0.00015821 0.34095 0.00013219 387.7126218295148 30.237 0.80643 30.237 29.919 30.725 0 47 22 3 0 0 0 8448 1 5427 5427 3.5871 0 1 4281500 33760 2772 22683 22698 33248 33248 0.014790994168379257 PKVKHILK 8 Unmodified _PKVKHILK_ 0 0 0 nc|nan|Q8N4C9-2|C17orf78;ENSG00000278505|ENST00000615133|C17orf78 nc|nan|Q8N4C9-2|C17orf78 nc|nan|Q8N4C9-2|C17orf78 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7806701660156 2 481.829112 961.643671 NaN NaN NaN NaN NaN NaN NaN 13.377 1 12.257 11.757 12.757 -1.1206 0 0 0 0.21486 1 1685 1685 2.3027 1.6124 1 33761 8043 22684 22699 33249 33249 0.16131524198806346 PKVKRQLPKG 10 Unmodified _PKVKRQLPKG_ 0 0 0 REV__TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant REV__TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3174438476562 2 575.874582 1149.73461 NaN NaN NaN NaN NaN NaN NaN 50.28 1 47.399 46.899 47.899 -2.8811 0 0 0 0.22588 1 9539 9539 1.4819 0.8804 1 + 33762 14333 22685 22700 33250 33250 0.1657336817625037 PKVLGLGGGR 10 Unmodified _PKVLGLGGGR_ 0 0 0 REV__ENST00000589132.1_1_12:1100800-1100893:+|nuORF REV__ENST00000589132.1_1_12:1100800-1100893:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.1185302734375 3 318.534543 952.581799 0.10393 3.3105E-05 -0.45907 -0.00014623 -0.35514 -0.00011313 318.53433779007526 25.756 0.97045 24.121 23.542 24.513 -1.6347 68 27 3 0 0 0 0.91149 1 4150 4150 0.12286 0 1 4079400 + 33763 23308 22686 22701 33251 33251 0.10361172779664685 PKVLRAKPA 9 Unmodified _PKVLRAKPA_ 0 0 0 REV__CLMP|p.R298Afs*38|1|0.27|ENSG00000166250|chr11:123073705-123073705|T/-|frameshift_variant REV__CLMP|p.R298Afs*38|1|0.27|ENSG00000166250|chr11:123073705-123073705|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2554931640625 2 490.324194 978.633835 NaN NaN NaN NaN NaN NaN NaN 88.193 1 84.442 83.942 84.942 -3.7501 0 0 0 0.23508 1 16879 16879 2.0598 0.40713 1 + 33764 13451 22687 22702 33252 33252 0.1436633619340455 PKVPVKKLL 9 Unmodified _PKVPVKKLL_ 0 0 0 tr|U7T519|U7T519_FUSNUMethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00275PE=3SV=1 tr|U7T519|U7T519_FUSNUMethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00275PE=3SV=1 tr|U7T519|U7T519_FUSNUMethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00275PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.1646728515625 3 341.242589 1020.70594 NaN NaN NaN NaN NaN NaN NaN 64.561 1 64.561 64.061 65.061 0 0 0 0 0.23508 1 12430 12430 0.23584 0 1 33765 26446 22688 22703 33253 33253 0.1964125054713577 PKVRAARY 8 Unmodified _PKVRAARY_ 0 0 0 ENST00000555698.5_1_14:21269656-21269824:-|nuORF ENST00000555698.5_1_14:21269656-21269824:-|nuORF ENST00000555698.5_1_14:21269656-21269824:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2532958984375 2 480.790518 959.566484 -0.441 -0.00021203 0.21769 0.00010466 -0.22331 -0.00010737 480.79077724817387 17.124 0.24216 15.852 15.696 15.938 -1.2722 10 6 2 0 0 0 0.83982 1 2480 2480 2.5775 0 1 248250 33766 11233 22689 22704 33254 33254 0.08508305982456932 PKVVKPKAAK 10 Unmodified _PKVVKPKAAK_ 0 0 0 REV__ENSG00000187837|ENST00000343677|H1-2 REV__ENSG00000187837|ENST00000343677|H1-2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2763061523438 2 533.360776 1064.707 NaN NaN NaN NaN NaN NaN NaN 56.821 1 53.631 53.131 54.131 -3.1895 0 0 0 0.22588 1 10539 10539 3.2813 0 1 + 33767 19114 22690 22705 33255 33255 0.17723464916025478 PKWIASYLVPA 11 Unmodified _PKWIASYLVPA_ 0 0 0 ENST00000508745.1_1_5:36705784-36725253:-|nuORF ENST00000508745.1_1_5:36705784-36725253:-|nuORF ENST00000508745.1_1_5:36705784-36725253:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7679443359375 2 622.855524 1243.69649 NaN NaN NaN NaN NaN NaN NaN 167.53 1 162.58 162.08 163.08 -4.948 0 0 0 0.20577 1 32962 32962 17.443 5.9479 1 33768 10716 22691 22706 33256 33256 0.08439437470951816 PKWIRYFYRI 10 Unmodified _PKWIRYFYRI_ 0 0 0 FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2485046386719 3 481.274952 1440.80303 -0.13174 -6.3402E-05 1.1089 0.00053368 0.97715 0.00047028 481.27533060918034 13.628 0.16934 13.628 13.515 13.685 0 5 4 2 0 0 0 0.76781 1 1956 1956 0.13989 0 1 177520 33769 11796 22692 22707 33257 33257 0.10025612756112423 PKWIRYFYRI 10 Unmodified _PKWIRYFYRI_ 0 0 0 FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 481.274952 1440.80303 -0.60663 -0.00029196 2.1742 0.0010464 1.5676 0.00075445 481.27580192755136 14.475 0.179 13.302 13.21 13.389 -1.173 -0.16314 0.00090187 NaN 0.13989 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 136670 33770 11796 22692 22707 0.10025612756112423 PKWRKTHL 8 Unmodified _PKWRKTHL_ 0 0 0 MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant;MMP10|p.L211Sfs*23|1|0.13|ENSG00000166670|chr11:102776764-102776767|AATA/-|frameshift_variant;ENSG00000166670|ENST00000279441|MMP10;ENSG00000149968|ENST00000299855|MMP3 MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant MMP10|p.F170Lfs*4|1|0.32|ENSG00000166670|chr11:102778735-102778736|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26708984375 2 533.319443 1064.62433 NaN NaN NaN NaN NaN NaN NaN 12.012 1 12.012 11.512 12.512 0 0 0 0 0.21486 1 1640 1640 4.756 0.81161 1 33771 5740 22693 22708 33258 33258 0.09460567907876793 PKWRLWRRQEW 11 Unmodified _PKWRLWRRQEW_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.77392578125 3 547.635542 1639.8848 NaN NaN NaN NaN NaN NaN NaN 53.17 1 53.17 52.67 53.67 0 0 0 0 0.23698 1 10120 10120 0.45452 0.45452 1 33772 25816 22694 22709 33259 33259 0.09045108167902072 PKWRLWRRQEW 11 Unmodified _PKWRLWRRQEW_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7800903320312 3 547.635542 1639.8848 0.32934 0.00018036 -3.9185 -0.0021459 -3.5892 -0.0019656 547.6329536149991 135.13 0.16647 135.13 135.02 135.19 0 5 4 2 0 0 0 0.96225 1 26747 26747 0.40827 0.40827 1 1735600 33773 25816 22694 22709 33260 33260 0.09045108167902072 PKWRLWRRQEW 11 Unmodified _PKWRLWRRQEW_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7689208984375 3 547.635542 1639.8848 0.1675 9.1728E-05 -1.0683 -0.00058506 -0.90083 -0.00049333 547.6355969128026 46.102 0.17529 43.261 43.171 43.347 -2.8409 6 4 2 0 0 0 0.96227 1 8695 8695 0.08335 0.08335 1 473380 33774 25816 22694 22709 33261 33261 0.09045108167902072 PKYEEPVHRPQ 11 Unmodified _PKYEEPVHRPQ_ 0 0 0 REV__SAXO2|p.R273Efs*13|1|0.27|ENSG00000188659|chr15:82282677-82282677|A/-|frameshift_variant REV__SAXO2|p.R273Efs*13|1|0.27|ENSG00000188659|chr15:82282677-82282677|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2452087402344 3 460.573726 1378.69935 NaN NaN NaN NaN NaN NaN NaN 19.07 1 17.674 17.174 18.174 -1.3966 0 0 0 0.23689 1 3130 3130 2.8433 0.21205 1 + 33775 19163 22695 22710 33262 33262 0.02514660857787021 PKYPREYREVF 11 Unmodified _PKYPREYREVF_ 0 0 0 REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6 REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3873291015625 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 129.17 1 124.35 123.85 124.85 -4.817 0 0 0 0.22632 1 24797 24797 0.00056442 0 1 + 33776 14258 22696 22711 33263 33263 0.03987806925943005 PLAFLLMLYA 10 Unmodified _PLAFLLMLYA_ 0 0 0 nc|ENSG00000178233|Q8IW70-2|TMEM151B;ENSG00000178233|ENST00000451188|TMEM151B nc|ENSG00000178233|Q8IW70-2|TMEM151B nc|ENSG00000178233|Q8IW70-2|TMEM151B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3308715820312 2 576.330296 1150.64604 NaN NaN NaN NaN NaN NaN NaN 141.54 1 136.55 136.05 137.05 -4.9877 0 0 0 0.22588 1 27259 27259 12.532 4.6214 1 33777 6571 22697 22712 33264 33264 0.07674191821593013 PLAHAKRWPQ 10 Unmodified _PLAHAKRWPQ_ 0 0 0 REV__ENST00000537363.5_1_19:10670171-10670590:-|nuORF REV__ENST00000537363.5_1_19:10670171-10670590:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2723999023438 2 602.340907 1202.66726 NaN NaN NaN NaN NaN NaN NaN 158.51 1 153.72 153.22 154.22 -4.7952 0 0 0 0.22588 1 31522 31522 10.074 1.9184 1 + 33778 22823 22698 22713 33265 33265 0.07403337965320134 PLAPLLPVS 9 Unmodified _PLAPLLPVS_ 0 0 0 nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75567626953125 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 80.567 1 80.567 80.067 81.067 0 0 0 0 0.1963 1 15686 15686 0.40827 0 1 33779 12344 22699 22714 33266 33266 0.10204733942327948 PLAPRSIRVE 10 Unmodified _PLAPRSIRVE_ 0 0 0 REV__ENST00000575142.5_1_17:4862831-4862993:-|nuORF REV__ENST00000575142.5_1_17:4862831-4862993:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2106628417969 3 379.89614 1136.66659 -0.041109 -1.5617E-05 0.40266 0.00015297 0.36155 0.00013735 379.89624703206596 43.796 0.63591 41.03 40.758 41.394 -2.7661 47 17 4 0 0 0 0.76361 1 7878 7878 1.4551 0.12547 1 5301600 + 33780 23198 22700 22715 33267 33267 0.10372498525612173 PLASLKTSY 9 Unmodified _PLASLKTSY_ 0 0 0 ENST00000468322.2_1_X:53573666-53573741:-|nuORF ENST00000468322.2_1_X:53573666-53573741:-|nuORF ENST00000468322.2_1_X:53573666-53573741:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27532958984375 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 106.72 1 102.46 101.96 102.96 -4.2638 0 0 0 0.21065 1 21010 21010 20.454 4.6064 1 33781 10166 22701 22716 33268 33268 0.048469382116991255 PLAVTSLS 8 Unmodified _PLAVTSLS_ 0 0 0 nc|ENSG00000022976|A8K0R7|ZNF839;nc|ENSG00000022976|A8K0R7-2|ZNF839;ZNF839|p.Q768Rfs*33|1|0.25|ENSG00000022976|chr14:102342046-102342047|AG/-|frameshift_variant;ENSG00000022976|ENST00000442396|ZNF839 nc|ENSG00000022976|A8K0R7|ZNF839 nc|ENSG00000022976|A8K0R7|ZNF839 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 394.2299499511719 2 394.231636 786.448719 NaN NaN NaN NaN NaN NaN NaN 176.15 1 176.15 175.65 176.65 0 0 0 0 0.21486 1 36491 36491 0.79363 0 1 33782 1129 22702 22717 33269 33269 0.04695308603140802 PLCFLGVFVCY 11 Unmodified _PLCFLGVFVCY_ 0 0 0 ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000508607.1_1_17:47783564-47785273:-|nuORF;ENST00000509781.5_1_17:47783523-47785306:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENST00000435059.6_1_17:47781399-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7626342773438 2 630.811413 1259.60827 NaN NaN NaN NaN NaN NaN NaN 137.3 1 137.3 136.8 137.8 0 0 0 0 0.22632 1 27229 27229 0.172 0 1 33783 3168 22703 22718 33270 33270 -0.011146424355047202 PLCISCCPV 9 Unmodified _PLCISCCPV_ 0 0 0 nc|ENSG00000163755|Q969F9-2|HPS3;ENSG00000163755|ENST00000296051|HPS3;HPS3|p.N332Kfs*31|1|0.34|ENSG00000163755|chr3:149145372-149145373|-/A|frameshift_variant;ENST00000486530.1_1_3:148847510-148871436:+|nuORF nc|ENSG00000163755|Q969F9-2|HPS3 nc|ENSG00000163755|Q969F9-2|HPS3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1444091796875 3 312.144682 933.412216 NaN NaN NaN NaN NaN NaN NaN 111.91 1 107.68 107.18 108.18 -4.2289 0 0 0 0.23508 1 21544 21544 1.1933 0.735 1 33784 5460 22704 22719 33271 33271 -0.057153508810870335 PLCKILFPVPF 11 Unmodified _PLCKILFPVPF_ 0 0 0 REV__nc|ENSG00000290649|Q8NH63|OR51H1 REV__nc|ENSG00000290649|Q8NH63|OR51H1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24951171875 3 425.250756 1272.73044 NaN NaN NaN NaN NaN NaN NaN 108.53 1 104.08 103.58 104.58 -4.4518 0 0 0 0.22632 1 20831 20831 3.0723 0 1 + 33785 24324 22705 22720 33272 33272 0.10498142638334684 PLDAEIFYGGY 11 Unmodified _PLDAEIFYGGY_ 0 0 0 REV__tr|U7T4W6|U7T4W6_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00220PE=4SV=1 REV__tr|U7T4W6|U7T4W6_FUSNUDUF3798domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00220PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7811889648438 2 622.795329 1243.5761 NaN NaN NaN NaN NaN NaN NaN 141.43 1 136.56 136.06 137.06 -4.8678 0 0 0 0.224 1 27292 27292 13.042 6.3193 1 + 33786 25399 22706 22721 33273 33273 -0.03594015313319687 PLDERDEDWDA 11 Unmodified _PLDERDEDWDA_ 0 0 0 ENSG00000230062|ENST00000565422|ANKRD66 ENSG00000230062|ENST00000565422|ANKRD66 ENSG00000230062|ENST00000565422|ANKRD66 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.759521484375 3 454.193239 1359.55789 NaN NaN NaN NaN NaN NaN NaN 143.2 1 138.17 137.67 138.67 -5.0261 0 0 0 0.22632 1 27606 27606 0.094841 0.088886 1 33787 7803 22707 22722 33274 33274 -0.10750802025995654 PLDFRSRQFCF 11 Unmodified _PLDFRSRQFCF_ 0 0 0 REV__ENST00000468303.5_1_1:24742100-24742349:-|nuORF REV__ENST00000468303.5_1_1:24742100-24742349:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 472.2216796875 3 472.567806 1414.68159 -0.87276 -0.00041244 2.4145 0.001141 1.5417 0.00072855 472.56927254146467 20.32 0.28059 18.685 18.57 18.851 -1.6351 10 7 2 0 0 0 0.89002 1 3152 3152 0.026206 0 1 284620 + 33788 21995 22708 22723 33275 33275 -0.009163776687046266 PLDGHVLCR 9 Unmodified _PLDGHVLCR_ 0 0 0 nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX nc|ENSG00000159840|Q15942-2|ZYX nc|ENSG00000159840|Q15942-2|ZYX MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.8043212890625 3 337.179771 1008.51748 -0.058078 -1.9583E-05 -2.6249 -0.00088506 -2.683 -0.00090464 337.17879670881166 23.397 0.52799 21.944 21.507 22.035 -1.4535 18 14 2 0 0 0 0.58921 1 3758 3758 4.897 4.8677 1 401050 33789 5218 22709 22724 33276 33276 0.013566496312023446 PLDGHVLCR 9 Unmodified _PLDGHVLCR_ 0 0 0 nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX nc|ENSG00000159840|Q15942-2|ZYX nc|ENSG00000159840|Q15942-2|ZYX MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 337.179771 1008.51748 -0.39417 -0.0001329 -3.6855 -0.0012427 -4.0797 -0.0013756 337.1786363612572 21.875 0.38217 21.875 21.635 22.017 0 -0.017291 -0.00073403 NaN 4.897 15 10 3 NaN NaN NaN NaN 0 NaN NaN 0 370770 33790 5218 22709 22724 0.013566496312023446 PLDGHVLCR 9 Unmodified _PLDGHVLCR_ 0 0 0 nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX nc|ENSG00000159840|Q15942-2|ZYX nc|ENSG00000159840|Q15942-2|ZYX MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 337.179771 1008.51748 -1.079 -0.00036383 -2.8358 -0.00095619 -3.9149 -0.00132 337.178987781552 23.647 0.31704 21.858 21.662 21.98 -1.7886 -0.034028 0.00012543 NaN 4.897 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 393760 33791 5218 22709 22724 0.013566496312023446 PLDNGWTL 8 Unmodified _PLDNGWTL_ 0 0 0 ENSG00000176542|ENST00000316407|USF3 ENSG00000176542|ENST00000316407|USF3 ENSG00000176542|ENST00000316407|USF3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23187255859375 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 29.222 1 29.222 28.722 29.722 0 0 0 0 0.22676 1 5213 5213 0.68139 0 1 33792 6472 22710 22725 33277 33277 -0.010864770279454206 PLDPSLSLPR 10 Unmodified _PLDPSLSLPR_ 0 0 0 REV__ENST00000595897.5_1_19:42407837-42410617:+|nuORF REV__ENST00000595897.5_1_19:42407837-42410617:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7916259765625 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 150.15 1 144.95 144.45 145.45 -5.1994 0 0 0 0.22588 1 29092 29092 12.241 0.60036 1 + 33793 23378 22711 22726 33278 33278 0.07009701023071102 PLDPTVPPV 9 Unmodified _PLDPTVPPV_ 0 0 0 REV__ENST00000530859.1_1_11:108029671-108040846:-|nuORF REV__ENST00000530859.1_1_11:108029671-108040846:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.18072509765625 3 312.179654 933.517133 NaN NaN NaN NaN NaN NaN NaN 78.421 1 74.762 74.262 75.262 -3.6588 0 0 0 0.23508 1 14939 14939 1.1933 0 1 + 33794 17005 22712 22727 33279 33279 0.04771553183002197 PLDQTPLFY 9 Unmodified _PLDQTPLFY_ 0 0 0 nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6;ENST00000514312.1_1_5:10415712-10417549:+|nuORF;ENST00000505253.1_1_5:10413496-10422048:+|nuORF nc|ENSG00000145495|O60337-6|MARCHF6 nc|ENSG00000145495|O60337-6|MARCHF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7832641601562 2 547.281857 1092.54916 0.51698 0.00028293 -0.42515 -0.00023268 0.09183 5.0257E-05 547.7834960604339 159.83 0.39143 154.58 154.43 154.82 -5.2526 15 10 2 0 0 0 0.19311 3 31029 31020;31026;31029 37.974 17.992 1 1660900 33795 4609 22713 22728 33280;33281;33282 33282 0.006589208661580415 PLDRKRLHFK 10 Unmodified _PLDRKRLHFK_ 0 0 0 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant;ENSG00000139517|ENST00000316334|LNX2 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21466064453125 3 437.266568 1308.77787 NaN NaN NaN NaN NaN NaN NaN 110.81 1 106.39 105.89 106.89 -4.4231 0 0 0 0.22588 1 21830 21830 3.5871 1.1523 1 33796 4251 22714 22729 33283 33283 0.13583557953529635 PLDRKRLHFK 10 Unmodified _PLDRKRLHFK_ 0 0 0 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant;ENSG00000139517|ENST00000316334|LNX2 LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2254333496094 3 437.266568 1308.77787 -0.076776 -3.3572E-05 2.402 0.0010503 2.3252 0.0010167 437.60202908747453 112.06 0.34673 107.53 107.45 107.8 -4.5259 12 9 2 0 0 0 0.52989 2 21547 21547;21549 1.9064 1.8926 1 863000 33797 4251 22714 22729 33284;33285 33284 0.13583557953529635 PLDRWKILY 9 Unmodified _PLDRWKILY_ 0 0 0 REV__CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant REV__CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.282470703125 2 602.347866 1202.68118 NaN NaN NaN NaN NaN NaN NaN 144.32 1 144.32 143.82 144.82 0 0 0 0 0.23508 1 28830 28830 12.532 0.29089 1 + 33798 13399 22715 22730 33286 33286 0.08794570673762792 PLDRYPAQ 8 Unmodified _PLDRYPAQ_ 0 0 0 nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF nc|ENSG00000179832|Q8NDA8-2|MROH1 nc|ENSG00000179832|Q8NDA8-2|MROH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25225830078125 2 480.250892 958.48723 -0.32752 -0.00015729 0.3194 0.00015339 -0.0081217 -3.9004E-06 480.25116058977056 58.688 0.89688 58.688 58.279 59.176 0 59 25 3 0 0 0 0.60622 2 11323 11271;11323 21.747 4.2069 1 4176100 33799 10979 22716 22731 33287;33288 33288 0.006326142376565258 PLDRYPAQ 8 Unmodified _PLDRYPAQ_ 0 0 0 nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF nc|ENSG00000179832|Q8NDA8-2|MROH1 nc|ENSG00000179832|Q8NDA8-2|MROH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25396728515625 2 480.250892 958.48723 0.066765 3.2064E-05 -0.6172 -0.00029641 -0.55043 -0.00026435 480.2508361327229 61.604 0.76929 58.643 58.205 58.974 -2.9614 50 21 3 0 0 0 0.60622 1 11926 11926 21.747 4.6338 1 4897300 33800 10979 22716 22731 33289 33289 0.006326142376565258 PLDRYPAQ 8 Unmodified _PLDRYPAQ_ 0 0 0 nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF nc|ENSG00000179832|Q8NDA8-2|MROH1 nc|ENSG00000179832|Q8NDA8-2|MROH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2527160644531 2 480.250892 958.48723 0.13956 6.7023E-05 -0.71457 -0.00034317 -0.57501 -0.00027615 480.25077959478546 61.967 0.8824 58.598 58.149 59.032 -3.3694 59 24 3 0 0 0 0.60622 1 11595 11595 21.747 1.293 1 3692700 33801 10979 22716 22731 33290 33290 0.006326142376565258 PLDSFHAKE 9 Unmodified _PLDSFHAKE_ 0 0 0 SLC20A1|p.R434H|1|0.34|ENSG00000144136|chr2:112659456-112659456|G/A|missense_variant SLC20A1|p.R434H|1|0.34|ENSG00000144136|chr2:112659456-112659456|G/A|missense_variant SLC20A1|p.R434H|1|0.34|ENSG00000144136|chr2:112659456-112659456|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2589111328125 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 145.73 1 145.73 145.23 146.23 0 0 0 0 0.23508 1 29131 29131 12.532 3.1484 1 33802 25673 22717 22732 33291 33291 -0.011194204534831442 PLDSPESY 8 Unmodified _PLDSPESY_ 0 0 0 ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3;PLXNB3|p.L1091Cfs*36|1|0.53|ENSG00000198753|chrX:153773699-153773699|G/-|frameshift_variant;PLXNB3|p.G1176Afs*22|1|0.15|ENSG00000198753|chrX:153774191-153774191|G/-|frameshift_variant;PLXNB3|p.V1655Cfs*7|1|0.56|ENSG00000198753|chrX:153777236-153777236|G/-|frameshift_variant;PLXNB3|p.R538Afs*67|1|0.27|ENSG00000198753|chrX:153769918-153769918|C/-|frameshift_variant ENSG00000198753|ENST00000361971|PLXNB3 ENSG00000198753|ENST00000361971|PLXNB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7501220703125 2 454.205815 906.397078 NaN NaN NaN NaN NaN NaN NaN 148.66 1 143.5 143 144 -5.1557 0 0 0 0.21486 1 28786 28786 10.183 0.10947 1 33803 7486 22718 22733 33292 33292 -0.059864798814146525 PLDTSRAAGR 10 Unmodified _PLDTSRAAGR_ 0 0 0 REV__CCNO|p.L83Rfs*51|1|0.4|ENSG00000152669|chr5:55233272-55233276|GGGCA/-|frameshift_variant REV__CCNO|p.L83Rfs*51|1|0.4|ENSG00000152669|chr5:55233272-55233276|GGGCA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2823486328125 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 166.04 1 161.25 160.75 161.75 -4.7898 0 0 0 0.22588 1 33308 33308 13.042 0.51092 1 + 33804 13310 22719 22734 33293 33293 0.032381890436681715 PLDTSRAAGR 10 Unmodified _PLDTSRAAGR_ 0 0 0 REV__CCNO|p.L83Rfs*51|1|0.4|ENSG00000152669|chr5:55233272-55233276|GGGCA/-|frameshift_variant REV__CCNO|p.L83Rfs*51|1|0.4|ENSG00000152669|chr5:55233272-55233276|GGGCA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2824096679688 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 166.99 1 162.04 161.54 162.54 -4.948 0 0 0 0.22588 1 32798 32798 13.042 0 1 + 33805 13310 22719 22734 33294 33294 0.032381890436681715 PLDVLPFRLH 10 Unmodified _PLDVLPFRLH_ 0 0 0 REV__tr|U7SSW7|U7SSW7_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01401PE=4SV=1 REV__tr|U7SSW7|U7SSW7_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01401PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 604.339111328125 2 603.853316 1205.69208 0.60911 0.00036781 0.64108 0.00038712 1.2502 0.00075493 604.3571045764662 171.38 0.10646 166.5 166.44 166.54 -4.873 4 2 2 0 0 0 0.75676 1 33947 33947 3.5965 0 1 2826900 + 33806 25072 22720 22735 33295 33295 0.09745973048052292 PLEEEAPQ 8 Unmodified _PLEEEAPQ_ 0 0 0 nc|ENSG00000125755|Q92797-2|SYMPK;SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant;SYMPK|p.S1168Pfs*46|1|0.35|ENSG00000125755|chr19:45816037-45816037|G/-|frameshift_variant;ENSG00000125755|ENST00000245934|SYMPK nc|ENSG00000125755|Q92797-2|SYMPK nc|ENSG00000125755|Q92797-2|SYMPK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 457.73541259765625 2 456.71909 911.423627 0.052276 2.3875E-05 0.1853 8.463E-05 0.23758 0.00010851 456.71911076873363 83.416 2.2275 79.543 78.231 80.459 -3.8736 151 63 3 0 0 0 8448 1 15694 15694 1.7423 1.1154 1 8153200 33807 3384 22721 22736 33296 33296 -0.035627909900881605 PLEEEQGP 8 Unmodified _PLEEEQGP_ 0 0 0 REV__nc|ENSG00000147130|Q14202-2|ZMYM3 REV__nc|ENSG00000147130|Q14202-2|ZMYM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.21820068359375 2 449.711265 897.407977 0.28904 0.00012999 0.029538 1.3283E-05 0.31858 0.00014327 449.7111896005934 52.2 1.776 52.2 51.613 53.389 0 77 49 2 0 0 0 0.86877 1 9971 9971 1.7423 0 1 4093600 + 33808 16920 22722 22737 33297 33297 -0.044830775071318385 PLEIIRYLS 9 Unmodified _PLEIIRYLS_ 0 0 0 ENSG00000072657|ENST00000261180|TRHDE;ENST00000549922.1_1_12:72962420-73015055:+|nuORF ENSG00000072657|ENST00000261180|TRHDE ENSG00000072657|ENST00000261180|TRHDE MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 552.325439453125 2 552.326599 1102.63865 NaN NaN NaN NaN NaN NaN NaN 169.14 1 169.14 168.64 169.64 0 0 0 0 0.19684 1 34708 34708 0.12781 0.098532 1 33809 1470 22723 22738 33298 33298 0.09143175545523263 PLEKAQFP 8 Unmodified _PLEKAQFP_ 0 0 0 REV__nc|ENSG00000165272|Q92482-2|AQP3 REV__nc|ENSG00000165272|Q92482-2|AQP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2582092285156 2 465.258185 928.501818 -0.044582 -2.0742E-05 0.10502 4.8863E-05 0.060443 2.8121E-05 465.25825872414526 53.367 0.60969 50.272 49.934 50.544 -3.0954 35 17 3 0 0 0 0.68128 1 9880 9880 16.942 2.3606 1 2401000 + 33810 24146 22724 22739 33299 33299 0.03470686385810495 PLEKVLLE 8 Unmodified _PLEKVLLE_ 0 0 0 ENST00000477777.1_1_X:153713880-153714433:-|nuORF;ENSG00000102178|ENST00000369660|UBL4A;ENST00000417913.1_1_X:153713880-153714888:-|nuORF ENST00000477777.1_1_X:153713880-153714433:-|nuORF ENST00000477777.1_1_X:153713880-153714433:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.18011474609375 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 111.98 1 111.98 111.48 112.48 0 0 0 0 0.21486 1 22030 22030 0.40072 0 1 33811 2114 22725 22740 33300 33300 0.09188412734158646 PLEPDIFF 8 Unmodified _PLEPDIFF_ 0 0 0 ENSG00000174145|ENST00000309447|NWD2;NWD2|p.D1262Gfs*18|1|0.39|ENSG00000174145|chr4:37445769-37445770|-/G|frameshift_variant;NWD2|p.W1259Gfs*22|4|0.26|ENSG00000174145|chr4:37445757-37445757|T/-|frameshift_variant;NWD2|p.K1317Nfs*43|1|0.35|ENSG00000174145|chr4:37445936-37445936|A/-|frameshift_variant ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25531005859375 2 489.252569 976.490584 0.019971 9.7709E-06 -0.6294 -0.00030793 -0.60943 -0.00029816 489.2522351500491 113.88 1.0512 109.43 108.94 109.99 -4.4538 70 29 3 0 0 0 0.69887 1 22485 22485 14.582 14.582 1 38285000 33812 6333 22726 22741 33301 33301 0.0013986429167971437 PLEPDIFF 8 Unmodified _PLEPDIFF_ 0 0 0 ENSG00000174145|ENST00000309447|NWD2;NWD2|p.D1262Gfs*18|1|0.39|ENSG00000174145|chr4:37445769-37445770|-/G|frameshift_variant;NWD2|p.W1259Gfs*22|4|0.26|ENSG00000174145|chr4:37445757-37445757|T/-|frameshift_variant;NWD2|p.K1317Nfs*43|1|0.35|ENSG00000174145|chr4:37445936-37445936|A/-|frameshift_variant ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25494384765625 2 489.252569 976.490584 0.23726 0.00011608 -0.84929 -0.00041552 -0.61203 -0.00029944 489.2521320131954 114.11 1.2646 109.56 109.03 110.29 -4.555 78 35 3 0 0 0 0.69887 1 21936 21936 14.582 0.67564 1 35401000 33813 6333 22726 22741 33302 33302 0.0013986429167971437 PLEPHTSESP 10 Unmodified _PLEPHTSESP_ 0 0 0 ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-3|FAM221B ENSG00000204930|ENST00000423537|FAM221B ENSG00000204930|ENST00000423537|FAM221B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.788330078125 2 547.261653 1092.50875 0.34836 0.00019064 0.025209 1.3796E-05 0.37357 0.00020444 547.2616367755851 23.076 0.58563 23.076 22.823 23.409 0 43 16 4 0 0 0 0.10354 1 3939 3939 58.679 14.821 1 8943900 33814 7621 22727 22742 33303 33303 -0.03380045524272646 PLEPHTSESP 10 Unmodified _PLEPHTSESP_ 0 0 0 ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-3|FAM221B ENSG00000204930|ENST00000423537|FAM221B ENSG00000204930|ENST00000423537|FAM221B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.261653 1092.50875 1.2223 0.0006689 -0.60127 -0.00032905 0.621 0.00033985 547.2613072303675 24.687 0.68865 23.038 22.649 23.337 -1.6482 0.00076057 -0.00077043 NaN 58.679 46 19 4 NaN NaN NaN NaN 0 NaN NaN 0 6975800 33815 7621 22727 22742 -0.03380045524272646 PLEPPHSP 8 Unmodified _PLEPPHSP_ 0 0 0 REV__nc|ENSG00000143575|O00165-5|HAX1 REV__nc|ENSG00000143575|O00165-5|HAX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.217529296875 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 128.15 1 128.15 127.65 128.65 0 0 0 0 0.21486 1 25305 25305 10.183 0 1 + 33816 16739 22728 22743 33304 33304 -0.0021045968237558554 PLEVYLSS 8 Unmodified _PLEVYLSS_ 0 0 0 REV__nc|ENSG00000073614|P29375-2|KDM5A REV__nc|ENSG00000073614|P29375-2|KDM5A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.76190185546875 2 454.242201 906.469849 NaN NaN NaN NaN NaN NaN NaN 127.24 1 122.54 122.04 123.04 -4.6998 0 0 0 0.23899 1 24477 24477 1.3295 0 1 + 33817 14302 22729 22744 33305 33305 0.012872739120098231 PLFAMYQQP 9 Unmodified _PLFAMYQQP_ 0 0 0 REV__ENSG00000178974|ENST00000313833|FBXO34 REV__ENSG00000178974|ENST00000313833|FBXO34 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7838745117188 2 547.770603 1093.52665 NaN NaN NaN NaN NaN NaN NaN 159.41 1 154.62 154.12 155.12 -4.7952 0 0 0 0.23411 1 31693 31693 13.508 4.1604 1 + 33818 18630 22730 22745 33306 33306 -0.01637001803101157 PLFEINWQ 8 Unmodified _PLFEINWQ_ 0 0 0 REV__ENST00000450157.5_1_1:39990647-40007421:-|nuORF REV__ENST00000450157.5_1_1:39990647-40007421:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.698974609375 2 523.768917 1045.52328 NaN NaN NaN NaN NaN NaN NaN 153.15 1 147.89 147.39 148.39 -5.2669 0 0 0 0.21486 1 29685 29685 10.183 1.5901 1 + 33819 21793 22731 22746 33307 33307 0.0023407141450206836 PLFFADTLY 9 Unmodified _PLFFADTLY_ 0 0 0 ANXA6|p.K607T|1|0.34|ENSG00000197043|chr5:151105264-151105264|T/G|missense_variant ANXA6|p.K607T|1|0.34|ENSG00000197043|chr5:151105264-151105264|T/G|missense_variant ANXA6|p.K607T|1|0.34|ENSG00000197043|chr5:151105264-151105264|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7789916992188 2 543.778951 1085.54335 NaN NaN NaN NaN NaN NaN NaN 99.478 1 95.209 94.709 95.709 -4.2692 0 0 0 0.21408 1 19016 19016 19.439 0 1 33820 170 22732 22747 33308 33308 0.0039982235448405845 PLFFFQWEWHK 11 Unmodified _PLFFFQWEWHK_ 0 0 0 ENST00000373374.7_1_1:34673819-34684388:+|nuORF ENST00000373374.7_1_1:34673819-34684388:+|nuORF ENST00000373374.7_1_1:34673819-34684388:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2640380859375 3 522.262712 1563.76631 NaN NaN NaN NaN NaN NaN NaN 127.25 1 122.64 122.14 123.14 -4.6172 0 0 0 0.22632 1 25094 25094 0.50596 0 1 33821 9198 22733 22748 33309 33309 0.006973161395308125 PLFFFQWEWHK 11 Unmodified _PLFFFQWEWHK_ 0 0 0 ENST00000373374.7_1_1:34673819-34684388:+|nuORF ENST00000373374.7_1_1:34673819-34684388:+|nuORF ENST00000373374.7_1_1:34673819-34684388:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.26220703125 3 522.262712 1563.76631 NaN NaN NaN NaN NaN NaN NaN 151.31 1 146.13 145.63 146.63 -5.1759 0 0 0 0.22632 1 29334 29334 1.4551 1.4289 1 33822 9198 22733 22748 33310 33310 0.006973161395308125 PLFFVLAR 8 Unmodified _PLFFVLAR_ 0 0 0 REV__ENST00000492568.1_1_1:230399815-230400148:+|nuORF REV__ENST00000492568.1_1_1:230399815-230400148:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7865905761719 2 481.794738 961.574923 0.079827 3.846E-05 1.0104 0.00048678 1.0902 0.00052524 481.7951660719356 51.902 0.63753 48.856 48.504 49.141 -3.0453 29 17 2 0 0 0 0.73426 1 9541 9541 9.3474 0 1 2166900 + 33823 22336 22734 22749 33311 33311 0.09259859899066214 PLFGCMLVY 9 Unmodified _PLFGCMLVY_ 0 0 0 REV__MELK|p.K445Dfs*4|1|0.27|ENSG00000165304|chr9:36665505-36665506|AA/-|frameshift_variant REV__MELK|p.K445Dfs*4|1|0.27|ENSG00000165304|chr9:36665505-36665506|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2727661132812 2 521.758649 1041.50275 0.1946 0.00010153 -0.59632 -0.00031114 -0.40173 -0.0002096 522.2599860201552 116.45 0.83509 116.45 115.91 116.74 0 33 23 2 0 0 0 0.47965 1 22870 22870 20.871 6.2895 1 1555400 + 33824 17756 22735 22750 33312 33312 -0.01634558561158883 PLFLILCLL 9 Unmodified _PLFLILCLL_ 0 0 0 FCAMR|p.R66Kfs*103|3|0.26|ENSG00000162897|chr1:206965831-206965832|-/T|frameshift_variant;nc|ENSG00000162897|Q8WWV6-2|FCAMR;nc|ENSG00000162897|Q8WWV6-4|FCAMR;nc|ENSG00000162897|Q8WWV6|FCAMR;ENSG00000162897|ENST00000324852|FCAMR FCAMR|p.R66Kfs*103|3|0.26|ENSG00000162897|chr1:206965831-206965832|-/T|frameshift_variant FCAMR|p.R66Kfs*103|3|0.26|ENSG00000162897|chr1:206965831-206965832|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2762451171875 2 522.829932 1043.64531 -0.039143 -2.0465E-05 -1.9112 -0.00099924 -1.9504 -0.0010197 522.8285348680874 120.89 0.3849 116.21 116 116.39 -4.6873 12 9 2 0 0 0 0.42933 1 23181 23181 0.37959 0 1 1103400 33825 5380 22736 22751 33313 33313 0.1252339717252653 PLFMKKAP 8 Unmodified _PLFMKKAP_ 0 0 0 ENST00000427137.1_1_7:46039864-46040332:-|nuORF ENST00000427137.1_1_7:46039864-46040332:-|nuORF ENST00000427137.1_1_7:46039864-46040332:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2123718261719 3 311.185975 930.536095 NaN NaN NaN NaN NaN NaN NaN 12.644 1 12.644 12.144 13.144 0 0 0 0 0.21486 1 1775 1775 0.45834 0 1 33826 9738 22737 22752 33314 33314 0.06804811273048017 PLFMNKLV 8 Unmodified _PLFMNKLV_ 0 0 0 REV__CUL5|p.I741V|1|0.25|ENSG00000166266|chr11:108104262-108104262|A/G|missense_variant REV__CUL5|p.I741V|1|0.25|ENSG00000166266|chr11:108104262-108104262|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23309326171875 2 481.280606 960.546659 NaN NaN NaN NaN NaN NaN NaN 130.28 1 125.5 125 126 -4.7725 0 0 0 0.21486 1 25070 25070 6.3541 0 1 + 33827 13616 22738 22753 33315 33315 0.06480793927494233 PLFPHLFLLIH 11 Unmodified _PLFPHLFLLIH_ 0 0 0 REV__ENST00000379441.7_1_12:56992203-56992269:-|nuORF REV__ENST00000379441.7_1_12:56992203-56992269:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 674.0142211914062 2 673.902808 1345.79106 NaN NaN NaN NaN NaN NaN NaN 169.42 1 164.63 164.13 165.13 -4.7898 0 0 0 0.23594 1 34318 34318 3.5965 0.31518 1 + 33828 21138 22739 22754 33316 33316 0.13199996012940574 PLFRSAQP 8 Unmodified _PLFRSAQP_ 0 0 0 REV__ENSG00000120709|ENST00000239906|FAM53C REV__ENSG00000120709|ENST00000239906|FAM53C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2379455566406 2 458.255977 914.497401 -0.19517 -8.9436E-05 0.46955 0.00021517 0.27438 0.00012574 458.2560932364102 110.81 0.78615 106.32 105.89 106.68 -4.4915 29 21 2 0 0 0 0.40222 1 21294 21294 32.305 2.0807 1 1142900 + 33829 15630 22740 22755 33317 33317 0.036732219628902385 PLGAHQQR 8 Unmodified _PLGAHQQR_ 0 0 0 ENST00000403952.3_2_7:808720-814797:+|nuORF ENST00000403952.3_2_7:808720-814797:+|nuORF ENST00000403952.3_2_7:808720-814797:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.74945068359375 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 145.44 1 145.44 144.94 145.94 0 0 0 0 0.21486 1 29066 29066 11.114 0 1 33830 9527 22741 22756 33318 33318 0.02662569534618342 PLGARGVG 8 Unmodified _PLGARGVG_ 0 0 0 REV__nc|ENSG00000169297|P51843-2|NR0B1 REV__nc|ENSG00000169297|P51843-2|NR0B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 726.3927001953125 1 726.425699 725.418422 0.42843 0.00031122 1.7753 0.0012896 2.2038 0.0016009 726.4233817814236 171.45 0.20602 166.54 166.38 166.59 -4.9149 6 5 2 0 0 0 1.0244 1 33934 33934 2.8892 0 1 7111500 + 33831 18093 22742 22757 33319 33319 0.04472994728632784 PLGIFSPLRS 10 Unmodified _PLGIFSPLRS_ 0 0 0 REV__ENST00000380495.8_1_16:30041857-30042208:-|nuORF REV__ENST00000380495.8_1_16:30041857-30042208:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7772827148438 2 543.818941 1085.62333 NaN NaN NaN NaN NaN NaN NaN 147.35 1 142.19 141.69 142.69 -5.1557 0 0 0 0.22573 1 28511 28511 15.248 0.8431 1 + 33832 21155 22743 22758 33320 33320 0.08394308748324875 PLGILPVRTL 10 Unmodified _PLGILPVRTL_ 0 0 0 ENST00000325042.2_1_7:22765745-22766153:-|nuORF ENST00000325042.2_1_7:22765745-22766153:-|nuORF ENST00000325042.2_1_7:22765745-22766153:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20172119140625 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 86.759 1 83.032 82.532 83.532 -3.727 0 0 0 0.22588 1 16963 16963 1.7423 0 1 33833 8737 22744 22759 33321 33321 0.15527758679127146 PLGILPVRTL 10 Unmodified _PLGILPVRTL_ 0 0 0 ENST00000325042.2_1_7:22765745-22766153:-|nuORF ENST00000325042.2_1_7:22765745-22766153:-|nuORF ENST00000325042.2_1_7:22765745-22766153:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013854980469 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 86.684 1 82.955 82.455 83.455 -3.7289 0 0 0 0.22588 1 16577 16577 1.7423 0 1 33834 8737 22744 22759 33322 33322 0.15527758679127146 PLGPIHGKRDL 11 Unmodified _PLGPIHGKRDL_ 0 0 0 ENST00000293414.5_1_17:42248126-42248306:+|nuORF ENST00000293414.5_1_17:42248126-42248306:+|nuORF ENST00000293414.5_1_17:42248126-42248306:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2767944335938 2 601.853847 1201.69314 NaN NaN NaN NaN NaN NaN NaN 68.157 1 68.157 67.657 68.657 0 0 0 0 0.22775 1 13177 13177 10.074 0.6908 1 33835 8482 22745 22760 33323 33323 0.1003618741694936 PLGPRTRVF 9 Unmodified _PLGPRTRVF_ 0 0 0 REV__ENST00000507044.1_1_4:1243919-1243994:+|nuORF REV__ENST00000507044.1_1_4:1243919-1243994:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2680053710938 2 521.811451 1041.60835 NaN NaN NaN NaN NaN NaN NaN 173.43 1 168.53 168.03 169.03 -4.8977 0 0 0 0.19652 1 34434 34434 0.073264 0 1 + 33836 22496 22746 22761 33324 33324 0.0892086167098114 PLGWFPYW 8 Unmodified _PLGWFPYW_ 0 0 0 REV__MS4A10|p.A99Lfs*12|1|0.12|ENSG00000172689|chr11:60791080-60791080|G/-|frameshift_variant REV__MS4A10|p.A99Lfs*12|1|0.12|ENSG00000172689|chr11:60791080-60791080|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.263671875 2 533.263271 1064.51199 NaN NaN NaN NaN NaN NaN NaN 5.738 1 4.7291 4.2291 5.2291 -1.0089 0 0 0 0.21486 1 294 294 0.79363 0 1 + 33837 23880 22747 22762 33325 33325 -0.017687058889805485 PLHAGRQSD 9 Unmodified _PLHAGRQSD_ 0 0 0 REV__ENSG00000185220|ENST00000329291|PGBD2 REV__ENSG00000185220|ENST00000329291|PGBD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2590026855469 2 490.749047 979.483542 0.06744 3.3096E-05 0.19178 9.4114E-05 0.25922 0.00012721 490.7491299736318 13.881 0.35434 13.881 13.755 14.109 0 27 9 4 0 0 0 0.87258 1 2072 2072 7.9102 4.3137 1 10759000 + 33838 18949 22748 22763 33326 33326 -0.00702055536203261 PLHAGRQSD 9 Unmodified _PLHAGRQSD_ 0 0 0 REV__ENSG00000185220|ENST00000329291|PGBD2 REV__ENSG00000185220|ENST00000329291|PGBD2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 490.749047 979.483542 -0.54925 -0.00026954 0.73346 0.00035995 0.18421 9.0401E-05 490.74939347300415 14.631 0.27587 13.517 13.365 13.641 -1.1142 -0.06417 0.00015351 NaN 7.9102 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1783900 + 33839 18949 22748 22763 -0.00702055536203261 PLHAGRQSD 9 Unmodified _PLHAGRQSD_ 0 0 0 REV__ENSG00000185220|ENST00000329291|PGBD2 REV__ENSG00000185220|ENST00000329291|PGBD2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.749047 979.483542 -0.5437 -0.00026682 0.62736 0.00030788 0.08366 4.1056E-05 490.7493618134596 14.65 0.17446 13.477 13.389 13.563 -1.173 -0.10435 4.9368E-05 NaN 7.9102 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 490550 + 33840 18949 22748 22763 -0.00702055536203261 PLHGAVYY 8 Unmodified _PLHGAVYY_ 0 0 0 REV__WDTC1|p.E290Nfs*8|3|0.4|ENSG00000142784|chr1:27294617-27294617|G/-|frameshift_variant REV__WDTC1|p.E290Nfs*8|3|0.4|ENSG00000142784|chr1:27294617-27294617|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2353210449219 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 126.4 1 126.4 125.9 126.9 0 0 0 0 0.21486 1 24943 24943 11.114 1.767 1 + 33841 16688 22749 22764 33327 33327 -0.002538693027190675 PLHGGLPH 8 Unmodified _PLHGGLPH_ 0 0 0 RHOJ|p.F187Lfs*82|1|0.39|ENSG00000126785|chr14:63290936-63290936|T/-|frameshift_variant RHOJ|p.F187Lfs*82|1|0.39|ENSG00000126785|chr14:63290936-63290936|T/-|frameshift_variant RHOJ|p.F187Lfs*82|1|0.39|ENSG00000126785|chr14:63290936-63290936|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 414.2491760253906 2 414.229762 826.444972 -0.20071 -8.314E-05 -1.3788 -0.00057115 -1.5795 -0.00065429 414.22910578196473 99.087 1.024 95.131 94.566 95.59 -3.9564 39 29 2 0 0 0 0.7545 1 19065 19065 6.3541 3.4649 1 1081300 33842 25609 22750 22765 33328 33328 0.02480683619944557 PLHGGLPH 8 Unmodified _PLHGGLPH_ 0 0 0 RHOJ|p.F187Lfs*82|1|0.39|ENSG00000126785|chr14:63290936-63290936|T/-|frameshift_variant RHOJ|p.F187Lfs*82|1|0.39|ENSG00000126785|chr14:63290936-63290936|T/-|frameshift_variant RHOJ|p.F187Lfs*82|1|0.39|ENSG00000126785|chr14:63290936-63290936|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 414.229762 826.444972 -0.13938 -5.7735E-05 -1.1672 -0.00048349 -1.3066 -0.00054123 414.2292560741559 99.071 0.76227 94.938 94.504 95.267 -4.1326 -0.096169 8.18E-05 NaN 6.3541 29 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1292000 33843 25609 22750 22765 0.02480683619944557 PLHHADPS 8 Unmodified _PLHHADPS_ 0 0 0 ENST00000470411.2_1_16:625978-626500:+|nuORF ENST00000470411.2_1_16:625978-626500:+|nuORF ENST00000470411.2_1_16:625978-626500:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21624755859375 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 98.401 1 98.401 97.901 98.901 0 0 0 0 0.21323 1 19287 19287 14.582 1.0738 1 33844 10199 22751 22766 33329 33329 -0.027245144849530334 PLHHADPS 8 Unmodified _PLHHADPS_ 0 0 0 ENST00000470411.2_1_16:625978-626500:+|nuORF ENST00000470411.2_1_16:625978-626500:+|nuORF ENST00000470411.2_1_16:625978-626500:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2161560058594 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 102.27 1 97.946 97.446 98.446 -4.3208 0 0 0 0.21323 1 19580 19580 14.582 5.2343 1 33845 10199 22751 22766 33330 33330 -0.027245144849530334 PLHHVRIFY 9 Unmodified _PLHHVRIFY_ 0 0 0 REV__KCNH8|p.D492Y|1|0.36|ENSG00000183960|chr3:19450204-19450204|G/T|missense_variant REV__KCNH8|p.D492Y|1|0.36|ENSG00000183960|chr3:19450204-19450204|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 591.3341674804688 2 591.33255 1180.65055 NaN NaN NaN NaN NaN NaN NaN 68.773 1 65.593 65.093 66.093 -3.1796 0 0 0 0.23508 1 13363 13363 4.756 0.81161 1 + 33846 23702 22752 22767 33331 33331 0.06744837079372701 PLHLHFLY 8 Unmodified _PLHLHFLY_ 0 0 0 ENST00000310645.9_1_21:47548903-47549056:+|nuORF ENST00000310645.9_1_21:47548903-47549056:+|nuORF ENST00000310645.9_1_21:47548903-47549056:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 347.1984558105469 3 347.195639 1038.56509 NaN NaN NaN NaN NaN NaN NaN 70.812 1 70.812 70.312 71.312 0 0 0 0 0.21486 1 13718 13718 1.8442 0.19162 1 33847 8643 22753 22768 33332 33332 0.047346718936978505 PLHLVECHLTV 11 Unmodified _PLHLVECHLTV_ 0 0 0 REV__nc|ENSG00000150337|P12314-2|FCGR1A REV__nc|ENSG00000150337|P12314-2|FCGR1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76318359375 2 630.842091 1259.66963 NaN NaN NaN NaN NaN NaN NaN 108.93 1 104.55 104.05 105.05 -4.3776 0 0 0 0.22632 1 21468 21468 0.172 0 1 + 33848 17027 22754 22769 33333 33333 0.05018005588090091 PLHPDRPP 8 Unmodified _PLHPDRPP_ 0 0 0 REV__ENSG00000113248|ENST00000231173|PCDHB15 REV__ENSG00000113248|ENST00000231173|PCDHB15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.170654296875 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 106.78 1 102.69 102.19 103.19 -4.0913 0 0 0 0.21486 1 20533 20533 4.3292 0 1 + 33849 15332 22755 22770 33334 33334 0.026003378201380656 PLHPGAWHH 9 Unmodified _PLHPGAWHH_ 0 0 0 ENST00000367157.4_2_1:205274400-205275379:-|nuORF ENST00000367157.4_2_1:205274400-205275379:-|nuORF ENST00000367157.4_2_1:205274400-205275379:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.1788330078125 3 351.178871 1050.51478 NaN NaN NaN NaN NaN NaN NaN 110.66 1 106.24 105.74 106.74 -4.4231 0 0 0 0.23508 1 21804 21804 1.1933 0.12188 1 33850 9060 22756 22771 33335 33335 -0.008454377114276213 PLHPPFPLPH 10 Unmodified _PLHPPFPLPH_ 0 0 0 REV__ENST00000270460.10_2_19:56206740-56207082:+|nuORF REV__ENST00000270460.10_2_19:56206740-56207082:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3232421875 2 576.321651 1150.62875 NaN NaN NaN NaN NaN NaN NaN 118.74 1 118.74 118.24 119.24 0 0 0 0 0.22588 1 23389 23389 12.532 3.1484 1 + 33851 20270 22757 22772 33336 33336 0.05946032330803064 PLHQVPGPA 9 Unmodified _PLHQVPGPA_ 0 0 0 nc|ENSG00000100253|Q9UGB7-2|MIOX nc|ENSG00000100253|Q9UGB7-2|MIOX nc|ENSG00000100253|Q9UGB7-2|MIOX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2386779785156 2 458.255977 914.497401 -0.4298 -0.00019696 0.71046 0.00032557 0.28067 0.00012862 458.2561549684108 110.75 0.62418 106.33 106.09 106.71 -4.4231 28 17 2 0 0 0 0.19188 1 21865 21865 38.151 5.8457 1 1630200 33852 12253 22758 22773 33337 33337 0.03673221962901607 PLHQVPGPA 9 Unmodified _PLHQVPGPA_ 0 0 0 nc|ENSG00000100253|Q9UGB7-2|MIOX nc|ENSG00000100253|Q9UGB7-2|MIOX nc|ENSG00000100253|Q9UGB7-2|MIOX MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23846435546875 2 458.255977 914.497401 0.62128 0.00028471 -0.37025 -0.00016967 0.25104 0.00011504 458.25584979006436 110.61 0.84381 106.38 106.06 106.9 -4.2289 27 23 2 0 0 0 0.60698 1 21334 21334 23.148 0 1 1251000 33853 12253 22758 22773 33338 33338 0.03673221962901607 PLHQVPGPA 9 Unmodified _PLHQVPGPA_ 0 0 0 nc|ENSG00000100253|Q9UGB7-2|MIOX nc|ENSG00000100253|Q9UGB7-2|MIOX nc|ENSG00000100253|Q9UGB7-2|MIOX MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.255977 914.497401 -0.19517 -8.9436E-05 0.46955 0.00021517 0.27438 0.00012574 458.2560932364102 110.81 0.78615 106.32 105.89 106.68 -4.4915 -0.0056195 -0.00010038 NaN 38.151 29 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1142900 33854 12253 22758 22773 0.03673221962901607 PLHRKKLVLAV 11 Unmodified _PLHRKKLVLAV_ 0 0 0 nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENSG00000166387|ENST00000299492|PPFIBP2;ENST00000524495.5_1_11:7669669-7672116:+|nuORF nc|ENSG00000166387|Q8ND30-3|PPFIBP2 nc|ENSG00000166387|Q8ND30-3|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25048828125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 154.65 1 149.87 149.37 150.37 -4.7791 0 0 0 0.22632 1 30740 30740 0.094841 0 1 33855 5717 22759 22774 33339 33339 0.21390489652844735 PLHRKKLVLAV 11 Unmodified _PLHRKKLVLAV_ 0 0 0 nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENSG00000166387|ENST00000299492|PPFIBP2;ENST00000524495.5_1_11:7669669-7672116:+|nuORF nc|ENSG00000166387|Q8ND30-3|PPFIBP2 nc|ENSG00000166387|Q8ND30-3|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2507019042969 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 155.83 1 150.55 150.05 151.05 -5.2854 0 0 0 0.22632 1 30227 30227 0.094841 0 1 33856 5717 22759 22774 33340 33340 0.21390489652844735 PLHRKKLVLAV 11 Unmodified _PLHRKKLVLAV_ 0 0 0 nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENSG00000166387|ENST00000299492|PPFIBP2;ENST00000524495.5_1_11:7669669-7672116:+|nuORF nc|ENSG00000166387|Q8ND30-3|PPFIBP2 nc|ENSG00000166387|Q8ND30-3|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2415771484375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 151.97 1 146.8 146.3 147.3 -5.1759 0 0 0 0.22632 1 29452 29452 0.094841 0 1 33857 5717 22759 22774 33341 33341 0.21390489652844735 PLHRKKLVLAV 11 Unmodified _PLHRKKLVLAV_ 0 0 0 nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENSG00000166387|ENST00000299492|PPFIBP2;ENST00000524495.5_1_11:7669669-7672116:+|nuORF nc|ENSG00000166387|Q8ND30-3|PPFIBP2 nc|ENSG00000166387|Q8ND30-3|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2514343261719 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 155.5 1 150.24 149.74 150.74 -5.2526 0 0 0 0.22632 1 30155 30155 0.094841 0 1 33858 5717 22759 22774 33342 33342 0.21390489652844735 PLHRKKLVLAV 11 Unmodified _PLHRKKLVLAV_ 0 0 0 nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENSG00000166387|ENST00000299492|PPFIBP2;ENST00000524495.5_1_11:7669669-7672116:+|nuORF nc|ENSG00000166387|Q8ND30-3|PPFIBP2 nc|ENSG00000166387|Q8ND30-3|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2513122558594 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 157 1 151.73 151.23 152.23 -5.2712 0 0 0 0.22632 1 30456 30456 0.094841 0 1 33859 5717 22759 22774 33343 33343 0.21390489652844735 PLHRVLVDK 9 Unmodified _PLHRVLVDK_ 0 0 0 REV__nc|ENSG00000083312|Q92973-3|TNPO1 REV__nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012939453125 3 359.557348 1075.65021 -0.028933 -1.0403E-05 -0.0022204 -7.9835E-07 -0.031153 -1.1201E-05 359.55728621040294 44.544 0.62318 41.778 41.462 42.085 -2.7661 35 17 3 0 0 0 0.69394 1 8052 8052 4.5289 0 1 1943500 + 33860 14449 22760 22775 33344 33344 0.11541417359512707 PLHVASHYGN 10 Unmodified _PLHVASHYGN_ 0 0 0 KIAA0146-ANK1|4|fusion;KIAA0146-ANK1|1|fusion;KIAA0146-ANK1|2|fusion;KIAA0146-ANK1|3|fusion;KIAA0146-ANK1|5|fusion;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1;nc|ENSG00000029534|P16157-5|ANK1 KIAA0146-ANK1|4|fusion KIAA0146-ANK1|4|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7880249023438 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 98.403 1 94.134 93.634 94.634 -4.2692 0 0 0 0.22583 1 18810 18810 13.906 2.2658 1 33861 11991 22761 22776 33345 33345 -0.012531959850548446 PLHVRKFIIFY 11 Unmodified _PLHVRKFIIFY_ 0 0 0 ENST00000372088.6_1_10:86274209-86274326:+|nuORF ENST00000372088.6_1_10:86274209-86274326:+|nuORF ENST00000372088.6_1_10:86274209-86274326:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7275390625 3 478.286969 1431.83908 NaN NaN NaN NaN NaN NaN NaN 120.1 1 115.63 115.13 116.13 -4.467 0 0 0 0.22632 1 23121 23121 0.026206 0 1 33862 9174 22762 22777 33346 33346 0.14043069932995422 PLIAEARG 8 Unmodified _PLIAEARG_ 0 0 0 REV__ENST00000355451.7_1_7:44421202-44421322:-|nuORF REV__ENST00000355451.7_1_7:44421202-44421322:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 413.7082214355469 2 413.742702 825.470852 -0.22051 -9.1234E-05 0.069781 2.8871E-05 -0.15073 -6.2362E-05 413.7427807011335 33.77 0.34172 31.452 31.288 31.63 -2.3175 16 9 2 0 0 0 0.88303 1 6217 6217 0.68139 0.054566 1 713950 + 33863 20792 22763 22778 33347 33347 0.05113533071562415 PLIAEARG 8 Unmodified _PLIAEARG_ 0 0 0 REV__ENST00000355451.7_1_7:44421202-44421322:-|nuORF REV__ENST00000355451.7_1_7:44421202-44421322:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 413.742702 825.470852 0.0048984 2.0267E-06 -0.30396 -0.00012576 -0.29906 -0.00012374 413.74256259800774 33.744 0.38582 31.528 31.319 31.705 -2.2158 -0.056963 -9.3716E-05 NaN 0.68139 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 783380 + 33864 20792 22763 22778 0.05113533071562415 PLILLVFATFL 11 Unmodified _PLILLVFATFL_ 0 0 0 nc|ENSG00000155066|Q8N271-3|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF;nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2 nc|ENSG00000155066|Q8N271-3|PROM2 nc|ENSG00000155066|Q8N271-3|PROM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 623.78271484375 2 623.894118 1245.77368 0.4291 0.00026771 1.8799 0.0011728 2.309 0.0014406 623.8946518632588 167.12 0.17691 162.18 162.05 162.23 -4.948 6 4 2 0 0 0 0.89055 1 32832 32832 0.026206 0 1 33427000 33865 5031 22764 22779 33348 33348 0.16062655687255756 PLILYIRM 8 Unmodified _PLILYIRM_ 0 0 0 REV__ENSG00000138641|ENST00000402738|HERC3 REV__ENSG00000138641|ENST00000402738|HERC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.2078552246094 3 340.208779 1017.60451 NaN NaN NaN NaN NaN NaN NaN 35.072 1 32.795 32.295 33.295 -2.2766 0 0 0 0.23312 1 6159 6159 6.2058 0 1 + 33866 16469 22765 22780 33349 33349 0.09641055852910085 PLINKRRF 8 Unmodified _PLINKRRF_ 0 0 0 tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1 tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1 tr|U7ST12|U7ST12_FUSNUMalatedehydrogenase(Oxaloacetate-decarboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01238PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.279541015625 2 522.327268 1042.63998 -0.20106 -0.00010502 -2.873 -0.0015007 -3.0741 -0.0016057 522.8263790301806 136.22 0.17325 131.58 131.5 131.67 -4.6399 6 4 2 0 0 0 1.0147 1 26895 26895 5.2307 0 1 1181400 33867 26120 22766 22781 33350 33350 0.12036854424923149 PLIPLRPLY 9 Unmodified _PLIPLRPLY_ 0 0 0 REV__nc|ENSG00000143322|P42684-2|ABL2 REV__nc|ENSG00000143322|P42684-2|ABL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.269775390625 2 541.342052 1080.66955 NaN NaN NaN NaN NaN NaN NaN 159.63 1 159.63 159.13 160.13 0 0 0 0 0.23508 1 32052 32052 9.3474 3.6156 1 + 33868 16714 22767 22782 33351 33351 0.13244373650422858 PLITADLEV 9 Unmodified _PLITADLEV_ 0 0 0 ENSG00000197768|ENST00000412566|STPG3;nc|ENSG00000197768|Q8N7X2-3|STPG3;nc|ENSG00000197768|Q8N7X2|STPG3;nc|ENSG00000197768|Q8N7X2-1|STPG3 ENSG00000197768|ENST00000412566|STPG3 ENSG00000197768|ENST00000412566|STPG3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1853332519531 3 324.186697 969.538263 NaN NaN NaN NaN NaN NaN NaN 68.018 1 64.91 64.41 65.41 -3.1086 0 0 0 0.23508 1 13201 13201 1.1933 0 1 33869 7397 22768 22783 33352 33352 0.05227518491858518 PLKALAKS 8 Unmodified _PLKALAKS_ 0 0 0 ENST00000498008.5_1_1:46809037-46809295:+|nuORF ENST00000498008.5_1_1:46809037-46809295:+|nuORF ENST00000498008.5_1_1:46809037-46809295:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.2701721191406 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 52.443 1 49.56 49.06 50.06 -2.8832 0 0 0 0.21486 1 9978 9978 5.2307 0 1 33870 10596 22769 22784 33353 33353 0.10743580628081872 PLKALQYGTAF 11 Unmodified _PLKALQYGTAF_ 0 0 0 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 604.8576049804688 2 604.837331 1207.66011 NaN NaN NaN NaN NaN NaN NaN 170.11 1 170.11 169.61 170.61 0 0 0 0 0.22632 1 34961 34961 0.0059557 0 1 33871 3314 22770 22785 33354 33354 0.06458560574219518 PLKAQIIVY 9 Unmodified _PLKAQIIVY_ 0 0 0 REV__ENST00000374057.3_1_9:117240621-117240699:-|nuORF REV__ENST00000374057.3_1_9:117240621-117240699:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2716674804688 2 522.826235 1043.63792 -0.13998 -7.3187E-05 -4.3527 -0.0022757 -4.4927 -0.0023489 523.3250962090062 143.5 0.17921 138.84 138.68 138.86 -4.656 5 4 2 0 0 0 0.6215 1 28356 28356 0.40827 0 1 2950700 + 33872 21049 22771 22786 33355 33355 0.11784380896460789 PLKEIPPAD 9 Unmodified _PLKEIPPAD_ 0 0 0 nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;NKRF|p.R664Dfs*7|1|0.22|ENSG00000186416|chrX:119589435-119589435|T/-|frameshift_variant;ENSG00000186416|ENST00000688521|NKRF nc|ENSG00000186416|O15226|NKRF nc|ENSG00000186416|O15226|NKRF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2743225097656 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 151.34 1 151.34 150.84 151.84 0 0 0 0 0.20628 1 30308 30308 21.747 5.8995 1 33873 7054 22772 22787 33356 33356 0.048469382116991255 PLKEKSPAQ 9 Unmodified _PLKEKSPAQ_ 0 0 0 nc|ENSG00000170653|P17544-4|ATF7 nc|ENSG00000170653|P17544-4|ATF7 nc|ENSG00000170653|P17544-4|ATF7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.9943542480469 3 333.194075 996.560395 0.20656 6.8825E-05 -3.2557 -0.0010848 -3.0492 -0.001016 333.52725307249926 34.119 0.30689 31.972 31.742 32.048 -2.1468 9 8 2 0 0 0 0.88425 1 5932 5932 0.96228 0 1 149840 33874 12457 22773 22788 33357 33357 0.061977429602734446 PLKELFVVK 9 Unmodified _PLKELFVVK_ 0 0 0 REV__ENSG00000160716|ENST00000368476|CHRNB2 REV__ENSG00000160716|ENST00000368476|CHRNB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.2712097167969 3 358.230349 1071.66922 -0.25181 -9.0205E-05 0.31148 0.00011158 0.059673 2.1377E-05 358.23039585259056 138.03 0.51819 138.03 137.8 138.32 0 23 14 2 0 0 0 0.67174 1 27430 27430 8.1555 1.0538 1 2707000 + 33875 17431 22774 22789 33358 33358 0.13624953930570882 PLKILLRLK 9 Unmodified _PLKILLRLK_ 0 0 0 REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7798461914062 2 547.394619 1092.77469 NaN NaN NaN NaN NaN NaN NaN 13.406 1 12.397 11.897 12.897 -1.0098 0 0 0 0.19635 1 1942 1942 0 0 1 + 33876 16455 22775 22790 33359 33359 0.23200914846825071 PLKKKKIKK 9 Unmodified _PLKKKKIKK_ 0 0 0 REV__ENST00000530859.1_1_11:108029671-108040846:-|nuORF REV__ENST00000530859.1_1_11:108029671-108040846:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 555.9708862304688 2 555.907894 1109.80123 NaN NaN NaN NaN NaN NaN NaN 163.28 1 158.23 157.73 158.73 -5.0446 0 0 0 0.23508 1 31764 31764 1.8442 1.3195 1 + 33877 17005 22776 22791 33360 33360 0.2507260373818099 PLKKKRVIL 9 Unmodified _PLKKKRVIL_ 0 0 0 REV__ENST00000394196.8_1_15:93570117-93570240:+|nuORF REV__ENST00000394196.8_1_15:93570117-93570240:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7730102539062 2 547.892244 1093.76993 NaN NaN NaN NaN NaN NaN NaN 170.51 1 165.59 165.09 166.09 -4.9149 0 0 0 0.23508 1 33717 33717 0.6015 0 1 + 33878 21244 22777 22792 33361 33361 0.2268003070407758 PLKKVIARKKV 11 Unmodified _PLKKVIARKKV_ 0 0 0 REV__nc|ENSG00000017260|P98194-2|ATP2C1 REV__nc|ENSG00000017260|P98194-2|ATP2C1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 427.1567077636719 3 427.30273 1278.88636 NaN NaN NaN NaN NaN NaN NaN 93.517 1 93.517 93.017 94.017 0 0 0 0 0.23698 1 18299 18299 0 0 1 + 33879 13966 22778 22793 33362 33362 0.2580734920393297 PLKKVIARKKV 11 Unmodified _PLKKVIARKKV_ 0 0 0 REV__nc|ENSG00000017260|P98194-2|ATP2C1 REV__nc|ENSG00000017260|P98194-2|ATP2C1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.1401672363281 3 427.30273 1278.88636 NaN NaN NaN NaN NaN NaN NaN 146.68 1 141.68 141.18 142.18 -5 0 0 0 0.23698 1 28389 28389 0.50596 0 1 + 33880 13966 22778 22793 33363 33363 0.2580734920393297 PLKKVLPL 8 Unmodified _PLKKVLPL_ 0 0 0 REV__ENST00000393042.3_1_12:99038471-99038534:-|nuORF REV__ENST00000393042.3_1_12:99038471-99038534:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 454.3188781738281 2 454.320589 906.626624 NaN NaN NaN NaN NaN NaN NaN 157.16 1 151.89 151.39 152.39 -5.2712 0 0 0 0.21486 1 30487 30487 0.79363 0 1 + 33881 21230 22779 22794 33364 33364 0.16957603592982196 PLKLLVVLLFH 11 Unmodified _PLKLLVVLLFH_ 0 0 0 REV__ENSG00000186407|ENST00000392619|CD300E REV__ENSG00000186407|ENST00000392619|CD300E MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 646.3643188476562 2 646.428659 1290.84277 NaN NaN NaN NaN NaN NaN NaN 168.71 1 163.84 163.34 164.34 -4.873 0 0 0 0.23634 1 33277 33277 3.2813 1.9518 1 + 33882 19029 22780 22795 33365 33365 0.20897739706833818 PLKPLLVSLLS 11 Unmodified _PLKPLLVSLLS_ 0 0 0 REV__ENSG00000123353|ENST00000243045|ORMDL2 REV__ENSG00000123353|ENST00000243045|ORMDL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2590942382812 2 590.389199 1178.76385 NaN NaN NaN NaN NaN NaN NaN 95.1 1 91.219 90.719 91.719 -3.881 0 0 0 0.22632 1 18247 18247 0.026206 0 1 + 33883 15724 22781 22796 33366 33366 0.18161467681898102 PLKPMLAH 8 Unmodified _PLKPMLAH_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7661437988281 2 453.765123 905.515694 NaN NaN NaN NaN NaN NaN NaN 138.5 1 138.5 138 139 0 0 0 0 0.21323 1 27499 27499 14.582 2.0501 1 33884 2312 22782 22797 33367 33367 0.059156406132501616 PLKPMLAH 8 Unmodified _PLKPMLAH_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76397705078125 2 453.765123 905.515694 NaN NaN NaN NaN NaN NaN NaN 145.34 1 140.28 139.78 140.78 -5.0671 0 0 0 0.23366 1 28083 28083 0.30703 0.29875 1 33885 2312 22782 22797 33368 33368 0.059156406132501616 PLKPQCAP 8 Unmodified _PLKPQCAP_ 0 0 0 REV__ENSG00000243477|ENST00000443094|NAA80 REV__ENSG00000243477|ENST00000443094|NAA80 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 427.1394958496094 2 427.233656 852.452759 NaN NaN NaN NaN NaN NaN NaN 122.75 1 122.75 122.25 123.25 0 0 0 0 0.21486 1 24193 24193 6.3541 0.59368 1 + 33886 19801 22783 22798 33369 33369 0.02063074825196054 PLKRKRQLL 9 Unmodified _PLKRKRQLL_ 0 0 0 REV__ENST00000342992.10_3_2:179554298-179556760:-|nuORF REV__ENST00000342992.10_3_2:179554298-179556760:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3265991210938 2 576.3904 1150.76625 NaN NaN NaN NaN NaN NaN NaN 138.23 1 133.39 132.89 133.89 -4.84 0 0 0 0.23508 1 26636 26636 0.6015 0 1 + 33887 20728 22784 22799 33370 33370 0.19689360930215116 PLKRVWLL 8 Unmodified _PLKRVWLL_ 0 0 0 REV__ENSG00000188133|ENST00000342743|TMEM215 REV__ENSG00000188133|ENST00000342743|TMEM215 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.2268371582031 3 342.22705 1023.65932 NaN NaN NaN NaN NaN NaN NaN 69.774 1 66.594 66.094 67.094 -3.1796 0 0 0 0.21486 1 13570 13570 4.3292 0 1 + 33888 19133 22785 22800 33371 33371 0.14843810715831296 PLKSRHRKE 9 Unmodified _PLKSRHRKE_ 0 0 0 REV__GTF3C3|p.P141H|1|0.1|ENSG00000119041|chr2:196791450-196791450|G/T|missense_variant REV__GTF3C3|p.P141H|1|0.1|ENSG00000119041|chr2:196791450-196791450|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3316650390625 2 575.843813 1149.67307 0.41432 0.00023858 -1.0362 -0.00059668 -0.62187 -0.0003581 575.8430798815533 155.69 1.8796 150.44 150.08 151.95 -5.2526 77 52 2 0 0 0 0.75112 1 30172 30172 3.9444 0 1 3268100 + 33889 23598 22786 22801 33372 33372 0.10422436476960684 PLKTKYLIS 9 Unmodified _PLKTKYLIS_ 0 0 0 REV__nc|ENSG00000198522|Q9HCN4-4|GPN1 REV__nc|ENSG00000198522|Q9HCN4-4|GPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.267822265625 2 531.831517 1061.64848 0.074727 3.9742E-05 0.12023 6.3941E-05 0.19496 0.00010368 531.8315444563195 99.846 0.52386 95.713 95.372 95.896 -4.1326 33 14 3 0 0 0 0.5428 1 19604 19604 4.897 0 1 3215600 + 33890 19418 22787 22802 33373 33373 0.12012363550911687 PLKVMKPH 8 Unmodified _PLKVMKPH_ 0 0 0 REV__ENST00000322038.5_2_18:73000909-73000948:+|nuORF REV__ENST00000322038.5_2_18:73000909-73000948:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1938171386719 3 317.193241 948.557893 NaN NaN NaN NaN NaN NaN NaN 130.5 1 125.67 125.17 126.17 -4.8355 0 0 0 0.21486 1 25059 25059 0.45834 0 1 + 33891 20556 22788 22803 33374 33374 0.08155616021622336 PLLALKLVKE 10 Unmodified _PLLALKLVKE_ 0 0 0 REV__ENSG00000283297|ENST00000637658|TEX52 REV__ENSG00000283297|ENST00000637658|TEX52 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2201232910156 3 375.253154 1122.73763 NaN NaN NaN NaN NaN NaN NaN 177.2 1 177.2 176.7 177.7 0 0 0 0 0.22588 1 36708 36708 0.15932 0 1 + 33892 19956 22789 22804 33375 33375 0.18117198510390153 PLLALPLGL 9 Unmodified _PLLALPLGL_ 0 0 0 REV__ENST00000529615.1_1_11:27359677-27371953:-|nuORF REV__ENST00000529615.1_1_11:27359677-27371953:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7607727050781 2 453.804771 905.59499 NaN NaN NaN NaN NaN NaN NaN 54.183 1 54.183 53.683 54.683 0 0 0 0 0.19624 1 10330 10330 0.073264 0 1 + 33893 22744 22790 22805 33376 33376 0.13841610839028817 PLLAPLGP 8 Unmodified _PLLAPLGP_ 0 0 0 REV__ENSG00000006432|ENST00000554752|MAP3K9;REV__ENSG00000148704|ENST00000369206|VAX1 REV__ENSG00000148704|ENST00000369206|VAX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 389.34539794921875 2 389.247089 776.479626 0.54319 0.00021144 -0.16385 -6.3779E-05 0.37934 0.00014766 389.2469640733553 23.114 0.35497 21.561 21.372 21.727 -1.5532 16 9 2 0 0 0 1.028 1 3967 3967 0 0 1 948160 33894 13874;16986 22791 22806 33377 33377 0.08244506708035715 PLLAPLGP 8 Unmodified _PLLAPLGP_ 0 0 0 REV__ENSG00000006432|ENST00000554752|MAP3K9;REV__ENSG00000148704|ENST00000369206|VAX1 REV__ENSG00000148704|ENST00000369206|VAX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 389.247089 776.479626 -0.09347 -3.6383E-05 0.59555 0.00023182 0.50208 0.00019543 389.2471888154434 21.523 0.37366 21.523 21.33 21.704 0 -0.02341 0.00027005 NaN 0 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1045400 33895 13874;16986 22791 22806 0.08244506708035715 PLLAPLGP 8 Unmodified _PLLAPLGP_ 0 0 0 REV__ENSG00000006432|ENST00000554752|MAP3K9;REV__ENSG00000148704|ENST00000369206|VAX1 REV__ENSG00000148704|ENST00000369206|VAX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 389.247089 776.479626 -0.085012 -3.3091E-05 0.32924 0.00012816 0.24423 9.5064E-05 389.2471970283161 23.008 0.34393 21.555 21.405 21.749 -1.4535 0.0088194 6.2725E-05 NaN 0 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 709040 33896 13874;16986 22791 22806 0.08244506708035715 PLLAVTTYT 9 Unmodified _PLLAVTTYT_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2676696777344 2 489.778951 977.543348 0.35741 0.00017505 -0.022219 -1.0882E-05 0.33519 0.00016417 489.7789265940839 118.43 1.217 113.93 113.32 114.53 -4.502 74 34 3 0 0 0 0.32428 1 23269 23269 30.225 1.738 1 33323000 + 33897 19227 22792 22807 33378 33378 0.05367822354457985 PLLDRPGEGSY 11 Unmodified _PLLDRPGEGSY_ 0 0 0 nc|ENSG00000134283|Q8NEY8|PPHLN1;PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;ENST00000549774.5_1_12:42720030-42749025:+|nuORF;ENST00000550535.5_1_12:42720030-42753098:+|nuORF nc|ENSG00000134283|Q8NEY8|PPHLN1 nc|ENSG00000134283|Q8NEY8|PPHLN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3009033203125 2 602.303852 1202.59315 NaN NaN NaN NaN NaN NaN NaN 144.46 1 139.79 139.29 140.29 -4.6694 0 0 0 0.22595 1 28603 28603 11.495 1.4208 1 33898 12334 22793 22808 33379 33379 -4.094707514923357E-05 PLLEITFLT 9 Unmodified _PLLEITFLT_ 0 0 0 REV__HELZ2|p.V2091I|1|0.24|ENSG00000130589|chr20:63562551-63562551|C/T|missense_variant REV__HELZ2|p.V2091I|1|0.24|ENSG00000130589|chr20:63562551-63562551|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6885375976562 2 523.810251 1045.60595 NaN NaN NaN NaN NaN NaN NaN 120.03 1 115.38 114.88 115.88 -4.645 0 0 0 0.23508 1 23033 23033 7.9102 0 1 + 33899 23609 22794 22809 33380 33380 0.08496968422628015 PLLGPHAG 8 Unmodified _PLLGPHAG_ 0 0 0 REV__ENST00000254508.6_1_3:13358520-13358661:-|nuORF REV__ENST00000254508.6_1_3:13358520-13358661:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2186279296875 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 55.67 1 52.786 52.286 53.286 -2.8837 0 0 0 0.23294 1 10658 10658 1.7423 0 1 + 33900 20121 22795 22810 33381 33381 0.03337878871366229 PLLGRMPLASS 11 Unmodified _PLLGRMPLASS_ 0 0 0 ENST00000521792.2_1_8:43125532-43126024:-|nuORF ENST00000521792.2_1_8:43125532-43126024:-|nuORF ENST00000521792.2_1_8:43125532-43126024:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21875 3 381.218115 1140.63251 NaN NaN NaN NaN NaN NaN NaN 18.022 1 16.507 16.007 17.007 -1.5148 0 0 0 0.22632 1 2648 2648 0.026206 0 1 33901 10855 22796 22811 33382 33382 0.0678233404232742 PLLILFVVG 9 Unmodified _PLLILFVVG_ 0 0 0 nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.6767272949219 3 324.21604 969.62629 NaN NaN NaN NaN NaN NaN NaN 84.473 1 80.563 80.063 81.063 -3.9093 0 0 0 0.1963 1 16058 16058 0 0 1 33902 6892 22797 22812 33383 33383 0.14026183873136233 PLLILFVVG 9 Unmodified _PLLILFVVG_ 0 0 0 nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.2286682128906 3 324.21604 969.62629 NaN NaN NaN NaN NaN NaN NaN 177.37 1 172.5 172 173 -4.8686 0 0 0 0.23508 1 35297 35297 0.26902 0 1 33903 6892 22797 22812 33384 33384 0.14026183873136233 PLLKIIKKK 9 Unmodified _PLLKIIKKK_ 0 0 0 ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2848510742188 2 540.896995 1079.77944 0.31042 0.0001679 -4.0445 -0.0021877 -3.7341 -0.0020198 541.3977641678978 136.33 0.1799 131.5 131.38 131.56 -4.8307 5 4 2 0 0 0 0.88433 1 26249 26249 0 0 1 4326900 33904 4961;4959 22798 22813 33385 33385 0.24273798989588613 PLLKKRLILLW 11 Unmodified _PLLKKRLILLW_ 0 0 0 ENST00000358025.7_1_14:64483293-64484313:+|nuORF ENST00000358025.7_1_14:64483293-64484313:+|nuORF ENST00000358025.7_1_14:64483293-64484313:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 697.413330078125 2 696.976308 1391.93806 NaN NaN NaN NaN NaN NaN NaN 170.66 1 165.87 165.37 166.37 -4.7898 0 0 0 0.23698 1 34651 34651 0.35063 0.043601 1 33905 8984 22799 22814 33386 33386 0.25777092897874354 PLLKPLWL 8 Unmodified _PLLKPLWL_ 0 0 0 REV__ENST00000341084.6_1_8:101270923-101271007:-|nuORF REV__ENST00000341084.6_1_8:101270923-101271007:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25726318359375 2 490.320589 978.626624 NaN NaN NaN NaN NaN NaN NaN 88.457 1 84.461 83.961 84.961 -3.9953 0 0 0 0.2396 1 16850 16850 0.30703 0 1 + 33906 20709 22800 22815 33387 33387 0.1364560359297684 PLLLARRAKL 10 Unmodified _PLLLARRAKL_ 0 0 0 REV__ENST00000472410.5_1_1:27687327-27687848:-|nuORF REV__ENST00000472410.5_1_1:27687327-27687848:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3248901367188 2 575.892775 1149.771 NaN NaN NaN NaN NaN NaN NaN 31.084 1 29.057 28.557 29.557 -2.0264 0 0 0 0.22588 1 5353 5353 0.45834 0 1 + 33907 22053 22801 22816 33388 33388 0.20210245072962607 PLLLFSAR 8 Unmodified _PLLLFSAR_ 0 0 0 ENST00000474625.1_1:147624215-147624437:-|nuORF ENST00000474625.1_1:147624215-147624437:-|nuORF ENST00000474625.1_1:147624215-147624437:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.1909484863281 3 306.192006 915.554188 NaN NaN NaN NaN NaN NaN NaN 16.166 1 16.166 15.666 16.666 0 0 0 0 0.2396 1 2502 2502 0.0082765 0 1 33908 10264 22802 22817 33389 33389 0.09303269519409696 PLLLFSARGP 10 Unmodified _PLLLFSARGP_ 0 0 0 ENST00000474625.1_1:147624215-147624437:-|nuORF ENST00000474625.1_1:147624215-147624437:-|nuORF ENST00000474625.1_1:147624215-147624437:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.55023193359375 3 357.550082 1069.62842 NaN NaN NaN NaN NaN NaN NaN 16.948 1 16.948 16.448 17.448 0 0 0 0 0.22588 1 2660 2660 1.9064 0.1641 1 33909 10264 22803 22818 33390 33390 0.09638612610933706 PLLLIKLEE 9 Unmodified _PLLLIKLEE_ 0 0 0 REV__tr|U7SPH6|U7SPH6_FUSNUPeptidechainreleasefactor1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfAPE=3SV=1 REV__tr|U7SPH6|U7SPH6_FUSNUPeptidechainreleasefactor1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=prfAPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.09600830078125 3 356.561876 1066.6638 -2.2936 -0.00081781 -0.26462 -9.4355E-05 -2.5582 -0.00091217 356.56174915808 13.494 0.16569 12.283 12.208 12.374 -1.2106 7 4 2 0 0 0 0.88466 1 1702 1702 0.26902 0 1 485130 + 33910 25004 22804 22819 33391 33391 0.1331323034808065 PLLLKRNIRY 10 Unmodified _PLLLKRNIRY_ 0 0 0 ENSG00000095539|ENST00000210633|SEMA4G;nc|ENSG00000095539|Q9NTN9|SEMA4G;nc|ENSG00000095539|Q9NTN9-3|SEMA4G ENSG00000095539|ENST00000210633|SEMA4G ENSG00000095539|ENST00000210633|SEMA4G MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.8556213378906 4 322.208033 1284.80303 -0.54554 -0.00017578 0.94924 0.00030585 0.4037 0.00013008 322.208367511131 16.977 0.3906 16.977 16.851 17.242 0 15 10 2 0 0 0 0.91149 1 2699 2699 0 0 1 803760 33911 1862 22805 22820 33392 33392 0.17201612756116447 PLLLKRRKK 9 Unmodified _PLLLKRRKK_ 0 0 0 ENSG00000162889|ENST00000367103|MAPKAPK2;ENST00000294981.8_1_1:206905793-206906060:+|nuORF ENSG00000162889|ENST00000367103|MAPKAPK2 ENSG00000162889|ENST00000367103|MAPKAPK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3294067382812 2 576.408592 1150.80263 NaN NaN NaN NaN NaN NaN NaN 138.89 1 138.89 138.39 139.39 0 0 0 0 0.23508 1 27591 27591 0.6015 0 1 33912 5377 22806 22821 33393 33393 0.23326237826927354 PLLLKRRKK 9 Unmodified _PLLLKRRKK_ 0 0 0 ENSG00000162889|ENST00000367103|MAPKAPK2;ENST00000294981.8_1_1:206905793-206906060:+|nuORF ENSG00000162889|ENST00000367103|MAPKAPK2 ENSG00000162889|ENST00000367103|MAPKAPK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3233642578125 2 576.408592 1150.80263 NaN NaN NaN NaN NaN NaN NaN 88.927 1 84.932 84.432 85.432 -3.9953 0 0 0 0.19631 1 16945 16945 0.20686 0 1 33913 5377 22806 22821 33394 33394 0.23326237826927354 PLLLKRTKL 9 Unmodified _PLLLKRTKL_ 0 0 0 REV__ENST00000336053.10_1_14:21678190-21678226:-|nuORF REV__ENST00000336053.10_1_14:21678190-21678226:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2801513671875 2 541.376426 1080.7383 NaN NaN NaN NaN NaN NaN NaN 133.81 1 128.94 128.44 129.44 -4.8726 0 0 0 0.23508 1 25709 25709 2.3027 0 1 + 33914 20662 22807 22822 33395 33395 0.20116037950128884 PLLLLHLFL 9 Unmodified _PLLLLHLFL_ 0 0 0 ENST00000484876.1_1_9:134400562-134401473:-|nuORF ENST00000484876.1_1_9:134400562-134401473:-|nuORF ENST00000484876.1_1_9:134400562-134401473:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2132263183594 3 360.238956 1077.69504 NaN NaN NaN NaN NaN NaN NaN 4.4292 1 3.3892 2.8892 3.8892 -1.04 0 0 0 0.19635 1 93 93 0 0 1 33915 10436 22808 22823 33396 33396 0.15929848172822858 PLLLLICIRG 10 Unmodified _PLLLLICIRG_ 0 0 0 MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 370.90618896484375 3 370.9071 1109.69947 NaN NaN NaN NaN NaN NaN NaN 9.9014 1 8.8078 8.3078 9.3078 -1.0936 0 0 0 0.22588 1 1086 1086 0 0 1 33916 12140 22809 22824 33397 33397 0.1490098932406454 PLLLLICIRG 10 Unmodified _PLLLLICIRG_ 0 0 0 MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 370.88494873046875 3 370.9071 1109.69947 NaN NaN NaN NaN NaN NaN NaN 9.9818 1 8.8883 8.3883 9.3883 -1.0936 0 0 0 0.22588 1 1101 1101 0 0 1 33917 12140 22809 22824 33398 33398 0.1490098932406454 PLLLLLLLRVP 11 Unmodified _PLLLLLLLRVP_ 0 0 0 SRPX|p.P226Qfs*32|2|0.25|ENSG00000101955|chrX:38161031-38161031|G/-|frameshift_variant;nc|ENSG00000101955|P78539-4|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;ENSG00000101955|ENST00000378533|SRPX SRPX|p.P226Qfs*32|2|0.25|ENSG00000101955|chrX:38161031-38161031|G/-|frameshift_variant SRPX|p.P226Qfs*32|2|0.25|ENSG00000101955|chrX:38161031-38161031|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7581176757812 2 630.444309 1258.87407 NaN NaN NaN NaN NaN NaN NaN 94.263 1 94.263 93.763 94.763 0 0 0 0 0.22632 1 18458 18458 0 0 1 33918 2100 22810 22825 33399 33399 0.2549831274091048 PLLLLLLLRVP 11 Unmodified _PLLLLLLLRVP_ 0 0 0 SRPX|p.P226Qfs*32|2|0.25|ENSG00000101955|chrX:38161031-38161031|G/-|frameshift_variant;nc|ENSG00000101955|P78539-4|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;ENSG00000101955|ENST00000378533|SRPX SRPX|p.P226Qfs*32|2|0.25|ENSG00000101955|chrX:38161031-38161031|G/-|frameshift_variant SRPX|p.P226Qfs*32|2|0.25|ENSG00000101955|chrX:38161031-38161031|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7568969726562 2 630.444309 1258.87407 NaN NaN NaN NaN NaN NaN NaN 174.97 1 170.18 169.68 170.68 -4.7898 0 0 0 0.22632 1 35761 35761 0.00056442 0 1 33919 2100 22810 22825 33400 33400 0.2549831274091048 PLLLLLRL 8 Unmodified _PLLLLLRL_ 0 0 0 ENSG00000127578|ENST00000319070|WFIKKN1 ENSG00000127578|ENST00000319070|WFIKKN1 ENSG00000127578|ENST00000319070|WFIKKN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 475.8554992675781 2 475.841688 949.668823 NaN NaN NaN NaN NaN NaN NaN 10.372 1 9.3059 8.8059 9.8059 -1.0664 0 0 0 0.21486 1 1119 1119 0 0 1 33920 3483 22811 22826 33401 33401 0.19197579001343001 PLLLLLRRRRR 11 Unmodified _PLLLLLRRRRR_ 0 0 0 REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 731.2399291992188 2 731.501878 1460.9892 NaN NaN NaN NaN NaN NaN NaN 163.12 1 158.33 157.83 158.83 -4.7898 0 0 0 0.23698 1 32498 32498 0 0 1 + 33921 20796 22812 22827 33402 33402 0.2771485471525921 PLLLLPLLLLL 11 Unmodified _PLLLLPLLLLL_ 0 0 0 ENST00000534789.5_1_19:50838228-50848012:-|nuORF;ENST00000534096.5_1_19:50838046-50848012:-|nuORF REV__nc|ENSG00000173706|Q9ULI3-2|HEG1 REV__nc|ENSG00000173706|Q9ULI3-2|HEG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 615.7517700195312 2 615.943611 1229.87267 NaN NaN NaN NaN NaN NaN NaN 166.2 1 161.22 160.72 161.72 -4.9811 0 0 0 0.23698 1 32551 32551 0.35063 0 1 + 33922 18370 22813 22828 33403 33403 0.266926786521708 PLLLPLLLME 10 Unmodified _PLLLPLLLME_ 0 0 0 REV__SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant REV__SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3268432617188 2 576.359053 1150.70355 0.28241 0.00016277 -0.97498 -0.00056194 -0.69257 -0.00039917 576.358955392612 115.03 0.55633 115.03 114.75 115.31 0 20 15 2 0 0 0 0.90091 1 22678 22678 3.2813 1.6287 1 4446300 + 33923 17461 22814 22829 33404 33404 0.1342303402716425 PLLLPLLLME 10 Unmodified _PLLLPLLLME_ 0 0 0 REV__SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant REV__SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3295288085938 2 576.359053 1150.70355 NaN NaN NaN NaN NaN NaN NaN 149.88 1 144.69 144.19 145.19 -5.1994 0 0 0 0.22588 1 29036 29036 3.5965 0.31518 1 + 33924 17461 22814 22829 33405 33405 0.1342303402716425 PLLLRQNVL 9 Unmodified _PLLLRQNVL_ 0 0 0 REV__NAA35|p.P310Lfs*9|1|0.07|ENSG00000135040|chr9:85996449-85996452|CCAC/-|frameshift_variant REV__NAA35|p.P310Lfs*9|1|0.07|ENSG00000135040|chr9:85996449-85996452|CCAC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2666625976562 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 162.32 1 157.53 157.03 158.03 -4.7898 0 0 0 0.23508 1 32298 32298 4.756 0.42677 1 + 33925 23912 22815 22830 33406 33406 0.1408658801931324 PLLPALQR 8 Unmodified _PLLPALQR_ 0 0 0 REV__HNRNPDL|p.F253Lfs*35|1|0.22|ENSG00000152795|chr4:82428033-82428033|A/-|frameshift_variant REV__HNRNPDL|p.F253Lfs*35|1|0.22|ENSG00000152795|chr4:82428033-82428033|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 303.19561767578125 3 303.195639 906.565087 NaN NaN NaN NaN NaN NaN NaN 107.87 1 107.87 107.37 108.37 0 0 0 0 0.21486 1 21210 21210 0.40072 0 1 + 33926 17123 22816 22831 33407 33407 0.1080667189369251 PLLPAPLT 8 Unmodified _PLLPAPLT_ 0 0 0 REV__ENST00000596070.1_1_19:6361585-6362062:+|nuORF REV__ENST00000596070.1_1_19:6361585-6362062:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1151123046875 2 411.260197 820.50584 0.82794 0.0003405 -0.81388 -0.00033471 0.014061 5.7828E-06 411.2598423265023 26.965 0.38218 25.183 24.96 25.342 -1.7821 17 10 2 0 0 0 1.028 1 4746 4746 0.69038 0 1 2028700 + 33927 23380 22817 22832 33408 33408 0.08840775879491503 PLLPAPLT 8 Unmodified _PLLPAPLT_ 0 0 0 REV__ENST00000596070.1_1_19:6361585-6362062:+|nuORF REV__ENST00000596070.1_1_19:6361585-6362062:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 411.260197 820.50584 0.1504 6.1853E-05 -0.12025 -4.9456E-05 0.030144 1.2397E-05 411.25999453178537 26.913 0.34753 25.278 25.001 25.349 -1.6347 0.047889 0.00037334 NaN 0.69038 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1534900 + 33928 23380 22817 22832 0.08840775879491503 PLLPGRLL 8 Unmodified _PLLPGRLL_ 0 0 0 ENSG00000205116|ENST00000378821|TMEM88B ENSG00000205116|ENST00000378821|TMEM88B ENSG00000205116|ENST00000378821|TMEM88B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 440.73883056640625 2 439.794738 877.574923 0.057819 2.5428E-05 -0.015008 -6.6003E-06 0.042811 1.8828E-05 439.79475447413375 134.69 0.59961 129.88 129.58 130.18 -4.8175 22 16 2 0 0 0 8448 1 25953 25953 6.2058 0 1 1982100 33929 7630 22818 22833 33409 33409 0.1312385989907625 PLLPGRLL 8 Unmodified _PLLPGRLL_ 0 0 0 ENSG00000205116|ENST00000378821|TMEM88B ENSG00000205116|ENST00000378821|TMEM88B ENSG00000205116|ENST00000378821|TMEM88B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 439.794738 877.574923 -0.12851 -5.6518E-05 0.31551 0.00013876 0.187 8.2242E-05 439.7947960918455 134.43 0.59746 129.79 129.46 130.06 -4.6399 -0.050408 0.00016835 NaN 6.2058 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1882000 33930 7630 22818 22833 0.1312385989907625 PLLPGRLL 8 Unmodified _PLLPGRLL_ 0 0 0 ENSG00000205116|ENST00000378821|TMEM88B ENSG00000205116|ENST00000378821|TMEM88B ENSG00000205116|ENST00000378821|TMEM88B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 439.794738 877.574923 0.010593 4.6588E-06 -0.041132 -1.809E-05 -0.030539 -1.3431E-05 439.79472209832716 134.73 0.59439 129.86 129.51 130.1 -4.8726 0.017223 -0.00014535 NaN 6.2058 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1385500 33931 7630 22818 22833 0.1312385989907625 PLLPKWKH 8 Unmodified _PLLPKWKH_ 0 0 0 REV__nc|ENSG00000151360|Q8N6M5-2|ALLC REV__nc|ENSG00000151360|Q8N6M5-2|ALLC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 340.5281982421875 3 340.2114 1017.61237 NaN NaN NaN NaN NaN NaN NaN 84.801 1 81.137 80.637 81.637 -3.6641 0 0 0 0.23664 1 16575 16575 3.2813 3.1584 1 + 33932 17063 22819 22834 33410 33410 0.10426951164697584 PLLPKWKH 8 Unmodified _PLLPKWKH_ 0 0 0 REV__nc|ENSG00000151360|Q8N6M5-2|ALLC REV__nc|ENSG00000151360|Q8N6M5-2|ALLC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 340.21221923828125 3 340.2114 1017.61237 NaN NaN NaN NaN NaN NaN NaN 85.21 1 81.301 80.801 81.801 -3.9093 0 0 0 0.23664 1 16204 16204 3.2813 3.1584 1 + 33933 17063 22819 22834 33411 33411 0.10426951164697584 PLLPKWKH 8 Unmodified _PLLPKWKH_ 0 0 0 REV__nc|ENSG00000151360|Q8N6M5-2|ALLC REV__nc|ENSG00000151360|Q8N6M5-2|ALLC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.527587890625 3 340.2114 1017.61237 NaN NaN NaN NaN NaN NaN NaN 84.549 1 80.837 80.337 81.337 -3.7117 0 0 0 0.23664 1 16151 16151 3.2813 0.78282 1 + 33934 17063 22819 22834 33412 33412 0.10426951164697584 PLLPLRLSQ 9 Unmodified _PLLPLRLSQ_ 0 0 0 REV__ENST00000380007.2_1_5:94956482-94957517:+|nuORF REV__ENST00000380007.2_1_5:94956482-94957517:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.5265197753906 3 346.221965 1035.64407 NaN NaN NaN NaN NaN NaN NaN 88.674 1 84.882 84.382 85.382 -3.7926 0 0 0 0.19632 1 17350 17350 1.2148 0.80657 1 + 33935 21149 22820 22835 33413 33413 0.12766899127996112 PLLQMRWFLR 10 Unmodified _PLLQMRWFLR_ 0 0 0 ENST00000531346.1_1_11:120196007-120201221:+|nuORF;ENSG00000181264|ENST00000375095|TLCD5;nc|ENSG00000181264|Q6ZRR5-3|TLCD5 ENST00000531346.1_1_11:120196007-120201221:+|nuORF ENST00000531346.1_1_11:120196007-120201221:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76409912109375 3 453.928787 1358.76453 -0.41563 -0.00018867 0.42402 0.00019247 0.008383 3.8053E-06 453.928945482125 16.916 0.3111 15.7 15.567 15.878 -1.2159 16 8 3 0 0 0 0.53419 1 2708 2708 0.043787 0 1 588440 33936 6718 22821 22836 33414 33414 0.09949983849946875 PLLRARRLA 9 Unmodified _PLLRARRLA_ 0 0 0 REV__ENST00000274853.7_1_6:30654254-30654479:-|nuORF REV__ENST00000274853.7_1_6:30654254-30654479:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2788696289062 2 533.353817 1064.69308 NaN NaN NaN NaN NaN NaN NaN 163.3 1 163.3 162.8 163.8 0 0 0 0 0.23508 1 32902 32902 7.9102 0.62092 1 + 33937 20288 22822 22837 33415 33415 0.16332232207605557 PLLRFLLPLY 10 Unmodified _PLLRFLLPLY_ 0 0 0 KDELR1|p.T146Sfs*151|1|0.08|ENSG00000105438|chr19:48384397-48384398|-/C|frameshift_variant KDELR1|p.T146Sfs*151|1|0.08|ENSG00000105438|chr19:48384397-48384398|-/C|frameshift_variant KDELR1|p.T146Sfs*151|1|0.08|ENSG00000105438|chr19:48384397-48384398|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.76318359375 2 622.891909 1243.76927 NaN NaN NaN NaN NaN NaN NaN 113.36 1 108.83 108.33 109.33 -4.5259 0 0 0 0.22588 1 21761 21761 1.8442 0.19162 1 33938 11988 22823 22838 33416 33416 0.15713191264376292 PLLRKRRF 8 Unmodified _PLLRKRRF_ 0 0 0 ENSG00000230358|ENST00000424157|SPDYE21;nc|ENSG00000205238|Q495Y8-2|SPDYE2;nc|ENSG00000136206|Q8NFV5|SPDYE1;ENSG00000136206|ENST00000693451|SPDYE1;ENSG00000260097|ENST00000563237|SPDYE6;ENSG00000205238|ENST00000691607|SPDYE2;ENSG00000173678|ENST00000507450|SPDYE2B;ENSG00000170092|ENST00000625065|SPDYE5;nc|ENSG00000179994|Q495Y7|SPDYE7P ENSG00000230358|ENST00000424157|SPDYE21;nc|ENSG00000179994|Q495Y7|SPDYE7P nc|ENSG00000179994|Q495Y7|SPDYE7P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77001953125 2 543.35636 1084.69817 0.16569 9.0031E-05 1.581 0.00085905 1.7467 0.00094908 543.8597097716962 153.45 0.10217 148.18 148.13 148.23 -5.2669 4 2 2 0 0 0 1.0249 1 29741 29741 2.5775 0 1 774200 33939 7805;12492 22824 22839 33417 33417 0.1592053607021171 PLLRLLRLLRV 11 Unmodified _PLLRLLRLLRV_ 0 0 0 REV__KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant REV__KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 681.3739013671875 2 681.477006 1360.93946 NaN NaN NaN NaN NaN NaN NaN 166.04 1 166.04 165.54 166.54 0 0 0 0 0.23698 1 33771 33771 0.35063 0 1 + 33940 16274 22825 22840 33418 33418 0.27342726986626076 PLLRLRKLLK 10 Unmodified _PLLRLRKLLK_ 0 0 0 REV__DIRAS3|p.A22T|1|0.35|ENSG00000162595|chr1:68047234-68047234|C/T|missense_variant REV__DIRAS3|p.A22T|1|0.35|ENSG00000162595|chr1:68047234-68047234|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 625.3465576171875 2 625.445175 1248.8758 NaN NaN NaN NaN NaN NaN NaN 171.85 1 166.98 166.48 167.48 -4.873 0 0 0 0.22588 1 34071 34071 0.40072 0.050084 1 + 33941 13685 22826 22841 33419 33419 0.261313665495436 PLLRQWWRWRM 11 Unmodified _PLLRQWWRWRM_ 0 0 0 REV__ENSG00000176410|ENST00000395176|DNAJC30 REV__ENSG00000176410|ENST00000395176|DNAJC30 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7847900390625 3 543.297873 1626.87179 0.45944 0.00024961 1.3116 0.00071259 1.771 0.0009622 543.2991726738 152.4 0.10303 147.22 147.16 147.26 -5.1759 4 2 2 0 0 0 0.96227 1 29541 29541 0.094841 0.094841 1 1195400 + 33942 18508 22827 22842 33420 33420 0.08342953784153906 PLLSFTQN 8 Unmodified _PLLSFTQN_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1;PKHD1|p.H2893Pfs*2|1|0.4|ENSG00000170927|chr6:51754903-51754904|-/G|frameshift_variant nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.248291015625 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 7.9533 1 6.8889 6.3889 7.3889 -1.0645 0 0 0 0.21486 1 740 740 0.79363 0 1 33943 6113 22828 22843 33421 33421 0.018580960061512997 PLLSHATLSR 10 Unmodified _PLLSHATLSR_ 0 0 0 REV__ENSG00000183856|ENST00000361170|IQGAP3 REV__ENSG00000183856|ENST00000361170|IQGAP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7760009765625 2 547.819473 1093.62439 NaN NaN NaN NaN NaN NaN NaN 149.13 1 144.02 143.52 144.52 -5.1113 0 0 0 0.22588 1 28894 28894 10.8 1.4164 1 + 33944 18871 22829 22844 33422 33422 0.0813252311722863 PLLTVETIHE 10 Unmodified _PLLTVETIHE_ 0 0 0 SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant;SETBP1|p.G1249Efs*3|1|0.36|ENSG00000152217|chr18:44953080-44953080|A/-|frameshift_variant;ENSG00000152217|ENST00000649279|SETBP1 SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.323974609375 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 157.72 1 152.44 151.94 152.94 -5.2854 0 0 0 0.22588 1 30611 30611 6.2058 0.47393 1 33945 4909 22830 22845 33423 33423 0.05410263957674033 PLLVEIIIK 9 Unmodified _PLLVEIIIK_ 0 0 0 REV__tr|U7T765|U7T765_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00131PE=4SV=1 REV__tr|U7T765|U7T765_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00131PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 520.8370971679688 2 519.352086 1036.68962 0.21898 0.00011373 -0.026061 -1.3535E-05 0.19292 0.00010019 519.3520325795547 170.95 0.30772 170.95 170.76 171.06 0 21 8 4 0 0 0 0.058839 1 35188 35188 43.858 18.977 1 101760000 + 33946 25462 22831 22846 33424 33424 0.1727412459038078 PLLVLLGLEN 10 Unmodified _PLLVLLGLEN_ 0 0 0 ENST00000477401.5_1_7:14660999-14880939:-|nuORF;DGKB|p.I551Cfs*3|1|0.02|ENSG00000136267|chr7:14574334-14574335|-/CACA|frameshift_variant;ENST00000403963.5_1_7:14249142-14880939:-|nuORF;nc|ENSG00000136267|Q9Y6T7-2|DGKB;ENSG00000136267|ENST00000402815|DGKB;nc|ENSG00000136267|Q9Y6T7|DGKB ENST00000477401.5_1_7:14660999-14880939:-|nuORF ENST00000477401.5_1_7:14660999-14880939:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2731323242188 2 540.8368 1079.65905 0.47212 0.00025534 -1.322 -0.000715 -0.8499 -0.00045966 540.8367337196037 118.83 0.10758 114.33 114.25 114.36 -4.502 4 2 2 0 0 0 1.1288 1 23436 23436 0.84494 0.43668 1 1604300 33947 822 22832 22847 33425 33425 0.1224034620531711 PLLVLVEIKQ 10 Unmodified _PLLVLVEIKQ_ 0 0 0 REV__nc|ENSG00000113389|P17342-2|NPR3 REV__nc|ENSG00000113389|P17342-2|NPR3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3344116210938 2 576.373549 1150.73255 NaN NaN NaN NaN NaN NaN NaN 52.721 1 52.721 52.221 53.221 0 0 0 0 0.22588 1 10024 10024 1.6526 0.32309 1 + 33948 15340 22833 22848 33426 33426 0.1632089464778801 PLLVVMVI 8 Unmodified _PLLVVMVI_ 0 0 0 JPH3|p.I727L|1|0.23|ENSG00000154118|chr16:87696592-87696592|A/C|missense_variant JPH3|p.I727L|1|0.23|ENSG00000154118|chr16:87696592-87696592|A/C|missense_variant JPH3|p.I727L|1|0.23|ENSG00000154118|chr16:87696592-87696592|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 442.28851318359375 2 442.2879 882.561247 NaN NaN NaN NaN NaN NaN NaN 177.76 1 172.97 172.47 173.47 -4.7898 0 0 0 0.21486 1 36358 36358 0.79363 0 1 33949 11971 22834 22849 33427 33427 0.11526866075644193 PLLWFWRHKSN 11 Unmodified _PLLWFWRHKSN_ 0 0 0 REV__ENSG00000119285|ENST00000366582|HEATR1 REV__ENSG00000119285|ENST00000366582|HEATR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.4012451171875 2 742.401496 1482.78844 NaN NaN NaN NaN NaN NaN NaN 130.12 1 130.12 129.62 130.62 0 0 0 0 0.23634 1 25711 25711 3.2813 0 1 + 33950 15575 22835 22850 33428 33428 0.06635540607976509 PLLYFDIF 8 Unmodified _PLLYFDIF_ 0 0 0 REV__ENST00000336838.10_1_2:55646247-55646439:-|nuORF REV__ENST00000336838.10_1_2:55646247-55646439:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 514.2640380859375 2 514.278586 1026.54262 NaN NaN NaN NaN NaN NaN NaN 116.11 1 111.62 111.12 112.12 -4.486 0 0 0 0.22934 1 22893 22893 0.25148 0.18749 1 + 33951 20669 22836 22851 33429 33429 0.03041027705421584 PLLYSFLIL 9 Unmodified _PLLYSFLIL_ 0 0 0 ENST00000468876.1_1_9:35663217-35664814:-|nuORF ENST00000468876.1_1_9:35663217-35664814:-|nuORF ENST00000468876.1_1_9:35663217-35664814:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21337890625 3 360.223083 1077.64742 NaN NaN NaN NaN NaN NaN NaN 34.245 1 34.245 33.745 34.745 0 0 0 0 0.19638 1 6261 6261 0.12781 0 1 33952 10175 22837 22852 33430 33430 0.11170149181998568 PLMPRVPP 8 Unmodified _PLMPRVPP_ 0 0 0 ENSG00000165905|ENST00000401752|LARGE2 ENSG00000165905|ENST00000401752|LARGE2 ENSG00000165905|ENST00000401752|LARGE2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76361083984375 2 453.765123 905.515694 NaN NaN NaN NaN NaN NaN NaN 145.67 1 140.56 140.06 141.06 -5.1108 0 0 0 0.21486 1 28155 28155 9.3474 1.4373 1 33953 5673 22838 22853 33431 33431 0.059156406132501616 PLNLWPKRQ 9 Unmodified _PLNLWPKRQ_ 0 0 0 REV__XPO7|p.K16Lfs*33|1|0.07|ENSG00000130227|chr8:21966883-21966884|-/TTAAAATTAAT|frameshift_variant REV__XPO7|p.K16Lfs*33|1|0.07|ENSG00000130227|chr8:21966883-21966884|-/TTAAAATTAAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3358764648438 2 576.337833 1150.66111 NaN NaN NaN NaN NaN NaN NaN 54.92 1 54.92 54.42 55.42 0 0 0 0 0.23508 1 10473 10473 7.2892 1.5574 1 + 33954 25547 22839 22854 33432 33432 0.09180819733796852 PLNRDPYS 8 Unmodified _PLNRDPYS_ 0 0 0 REV__ENST00000429744.2_1_1:52645740-52646091:+|nuORF REV__ENST00000429744.2_1_1:52645740-52646091:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2418518066406 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 129.82 1 125.19 124.69 125.69 -4.6319 0 0 0 0.21486 1 25584 25584 9.3474 0 1 + 33955 21604 22840 22855 33433 33433 -0.015319761420073519 PLNRRGPP 8 Unmodified _PLNRRGPP_ 0 0 0 REV__MIA3|p.D1827N|1|0.34|ENSG00000154305|chr1:222665374-222665374|G/A|missense_variant REV__MIA3|p.D1827N|1|0.34|ENSG00000154305|chr1:222665374-222665374|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.76776123046875 2 453.767043 905.519533 NaN NaN NaN NaN NaN NaN NaN 174.44 1 174.44 173.94 174.94 0 0 0 0 0.21486 1 36110 36110 9.3474 0.75416 1 + 33956 23855 22841 22856 33434 33434 0.0629944643133058 PLNTLHKIS 9 Unmodified _PLNTLHKIS_ 0 0 0 REV__ENSG00000165566|ENST00000515384|AMER2 REV__ENSG00000165566|ENST00000515384|AMER2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.2059020996094 3 341.537953 1021.59203 0.040205 1.3732E-05 -0.25331 -8.6517E-05 -0.21311 -7.2785E-05 341.5378458540585 80.099 0.79868 80.099 79.722 80.521 0 50 22 3 0 0 0 0.45972 1 15590 15590 8.1555 0 1 6343800 + 33957 17782 22842 22857 33435 33435 0.08209735714228827 PLNVFLLL 8 Unmodified _PLNVFLLL_ 0 0 0 REV__ENST00000395246.5_1_5:130727872-130728007:+|nuORF REV__ENST00000395246.5_1_5:130727872-130728007:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.21356201171875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 13.901 1 13.901 13.401 14.401 0 0 0 0 0.21486 1 2038 2038 0.45834 0 1 + 33958 21259 22843 22858 33436 33436 0.11265324322005199 PLPARTAHA 9 Unmodified _PLPARTAHA_ 0 0 0 ENST00000314228.9_1_19:44037361-44037451:+|nuORF ENST00000314228.9_1_19:44037361-44037451:+|nuORF ENST00000314228.9_1_19:44037361-44037451:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2583923339844 3 311.847009 932.519199 -0.59323 -0.000185 0.42786 0.00013343 -0.16537 -5.1571E-05 311.8471162057712 14.755 0.45381 14.755 14.634 15.087 0 38 12 5 0 0 0 0.884 1 2204 2204 0.26902 0 1 21634000 33959 8669 22844 22859 33437 33437 0.050240267114645576 PLPARTAHA 9 Unmodified _PLPARTAHA_ 0 0 0 ENST00000314228.9_1_19:44037361-44037451:+|nuORF ENST00000314228.9_1_19:44037361-44037451:+|nuORF ENST00000314228.9_1_19:44037361-44037451:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 311.847009 932.519199 -0.78634 -0.00024522 0.61607 0.00019212 -0.17027 -5.3098E-05 311.8471785766091 15.783 0.45895 14.567 14.412 14.871 -1.2159 -0.070712 0.00013379 NaN 0.26902 34 12 5 NaN NaN NaN NaN 0 NaN NaN 0 19787000 33960 8669 22844 22859 0.050240267114645576 PLPARTAHA 9 Unmodified _PLPARTAHA_ 0 0 0 ENST00000314228.9_1_19:44037361-44037451:+|nuORF ENST00000314228.9_1_19:44037361-44037451:+|nuORF ENST00000314228.9_1_19:44037361-44037451:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 311.847009 932.519199 -0.54572 -0.00017018 0.39488 0.00012314 -0.15084 -4.7039E-05 311.84710296816223 15.814 0.51977 14.592 14.435 14.955 -1.2219 -0.04622 -7.3138E-05 NaN 0.26902 40 14 5 NaN NaN NaN NaN 0 NaN NaN 0 14306000 33961 8669 22844 22859 0.050240267114645576 PLPAVRAAKGP 11 Unmodified _PLPAVRAAKGP_ 0 0 0 ENST00000450873.6_2_7:66236917-66240338:+|nuORF;ENST00000428370.1_3_7:66038415-66041909:-|nuORF ENST00000450873.6_2_7:66236917-66240338:+|nuORF ENST00000450873.6_2_7:66236917-66240338:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.0282287597656 3 359.557348 1075.65021 -0.04684 -1.6842E-05 0.39364 0.00014154 0.3468 0.0001247 359.5573968728166 41.614 0.45222 41.614 41.444 41.897 0 21 12 2 0 0 0 0.81642 1 7745 7745 1.4551 0 1 1777500 33962 9751 22845 22860 33438 33438 0.11541417359512707 PLPEAAAAQ 9 Unmodified _PLPEAAAAQ_ 0 0 0 ENST00000370223.7_2_10:102766720-102766858:+|nuORF ENST00000370223.7_2_10:102766720-102766858:+|nuORF ENST00000370223.7_2_10:102766720-102766858:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 433.8858947753906 2 434.232168 866.449782 0.21458 9.3179E-05 -0.51141 -0.00022207 -0.29682 -0.00012889 434.23193779031766 52.307 1.5269 52.307 51.474 53.001 0 83 42 3 0 0 0 0.79204 1 9845 9845 16.942 1.0951 1 7738500 33963 9137 22846 22861 33439 33439 0.011215229720392017 PLPEAAAAQ 9 Unmodified _PLPEAAAAQ_ 0 0 0 ENST00000370223.7_2_10:102766720-102766858:+|nuORF ENST00000370223.7_2_10:102766720-102766858:+|nuORF ENST00000370223.7_2_10:102766720-102766858:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 434.232168 866.449782 -0.34004 -0.00014766 0.18586 8.0705E-05 -0.15419 -6.6953E-05 434.2322125492574 54.972 1.5492 52.089 51.394 52.944 -2.8837 -0.15756 0.00022819 NaN 16.942 86 44 3 NaN NaN NaN NaN 0 NaN NaN 0 12194000 33964 9137 22846 22861 0.011215229720392017 PLPEAAAAQ 9 Unmodified _PLPEAAAAQ_ 0 0 0 ENST00000370223.7_2_10:102766720-102766858:+|nuORF ENST00000370223.7_2_10:102766720-102766858:+|nuORF ENST00000370223.7_2_10:102766720-102766858:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 434.232168 866.449782 0.02679 1.1633E-05 -0.091426 -3.97E-05 -0.064636 -2.8067E-05 434.2320801906382 55.397 1.6092 52.262 51.463 53.072 -3.1352 0.015462 -1.2618E-05 NaN 16.942 96 45 3 NaN NaN NaN NaN 0 NaN NaN 0 9234500 33965 9137 22846 22861 0.011215229720392017 PLPEAAAAQ 9 Unmodified _PLPEAAAAQ_ 0 0 0 ENST00000370223.7_2_10:102766720-102766858:+|nuORF ENST00000370223.7_2_10:102766720-102766858:+|nuORF ENST00000370223.7_2_10:102766720-102766858:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 434.232168 866.449782 -0.21019 -9.127E-05 0.16744 7.271E-05 -0.042743 -1.8561E-05 434.23217285145324 55.465 1.6734 52.327 51.483 53.157 -3.1377 0.081053 0.0002122 NaN 16.942 102 47 3 NaN NaN NaN NaN 0 NaN NaN 0 9871100 33966 9137 22846 22861 0.011215229720392017 PLPEEFLVLF 10 Unmodified _PLPEEFLVLF_ 0 0 0 MROH9|p.L759*|1|0.19|ENSG00000117501|chr1:171025412-171025412|T/-|frameshift_variant;MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant;ENSG00000117501|ENST00000367759|MROH9 MROH9|p.L759*|1|0.19|ENSG00000117501|chr1:171025412-171025412|T/-|frameshift_variant MROH9|p.L759*|1|0.19|ENSG00000117501|chr1:171025412-171025412|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2967529296875 2 602.336633 1202.65871 NaN NaN NaN NaN NaN NaN NaN 127.07 1 122.27 121.77 122.77 -4.7958 0 0 0 0.22588 1 24391 24391 3.9444 0.3479 1 33967 2988 22847 22862 33440 33440 0.06548926485470474 PLPEIGRR 8 Unmodified _PLPEIGRR_ 0 0 0 ENSG00000123572|ENST00000243300|NRK;NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant;NRK|p.I161Ffs*2|1|0.06|ENSG00000123572|chrX:105893932-105893933|-/GTTTT|frameshift_variant;nc|ENSG00000123572|Q7Z2Y5-3|NRK;NRK|p.D195Efs*12|1|0.15|ENSG00000123572|chrX:105898587-105898588|-/G|frameshift_variant;NRK|p.R337Dfs*8|1|0.44|ENSG00000123572|chrX:105906571-105906571|A/-|frameshift_variant;NRK|p.R337Kfs*11|1|0.3|ENSG00000123572|chrX:105906570-105906571|-/A|frameshift_variant ENSG00000123572|ENST00000243300|NRK ENSG00000123572|ENST00000243300|NRK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.1923522949219 3 313.190776 936.550499 NaN NaN NaN NaN NaN NaN NaN 176.48 1 171.69 171.19 172.19 -4.7898 0 0 0 0.21486 1 36088 36088 0.45834 0 1 33968 3274 22848 22863 33441 33441 0.07968599745572646 PLPELILVVL 10 Unmodified _PLPELILVVL_ 0 0 0 ENST00000480399.1_1_1:49224892-49242626:-|nuORF ENST00000480399.1_1_1:49224892-49242626:-|nuORF ENST00000480399.1_1_1:49224892-49242626:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 553.4258422851562 2 553.365193 1104.71583 NaN NaN NaN NaN NaN NaN NaN 164.43 1 159.37 158.87 159.87 -5.0648 0 0 0 0.22588 1 32066 32066 0.45834 0 1 33969 10355 22849 22864 33442 33442 0.16766393761872678 PLPFLSMFM 9 Unmodified _PLPFLSMFM_ 0 0 0 nc|ENSG00000167566|Q9HCH0-2|NCKAP5L;ENSG00000167566|ENST00000335999|NCKAP5L;NCKAP5L|p.P949Rfs*23|1|0.14|ENSG00000167566|chr12:49795014-49795014|G/-|frameshift_variant;NCKAP5L|p.I725Yfs*12|1|0.11|ENSG00000167566|chr12:49795688-49795688|C/-|frameshift_variant nc|ENSG00000167566|Q9HCH0-2|NCKAP5L nc|ENSG00000167566|Q9HCH0-2|NCKAP5L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2711181640625 2 541.774299 1081.53405 0.22647 0.0001227 -3.6683 -0.0019874 -3.4418 -0.0018647 542.2730374104785 160.11 0.21732 154.88 154.69 154.91 -5.2298 6 5 2 0 0 0 0.86532 1 31074 31074 2.0598 1.659 1 1001900 33970 5819 22850 22865 33443 33443 -0.0034598552704210306 PLPFTFYEQWR 11 Unmodified _PLPFTFYEQWR_ 0 0 0 REV__ENST00000367103.3_1_1:206907394-206907589:+|nuORF REV__ENST00000367103.3_1_1:206907394-206907589:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3738403320312 2 742.372069 1482.72959 NaN NaN NaN NaN NaN NaN NaN 118.97 1 118.97 118.47 119.47 0 0 0 0 0.2367 1 23433 23433 2.9952 1.5133 1 + 33971 20910 22851 22866 33444 33444 0.0075301952297195385 PLPIRLLLRL 10 Unmodified _PLPIRLLLRL_ 0 0 0 REV__ENST00000234610.5_1_1:1631484-1633139:+|nuORF REV__ENST00000234610.5_1_1:1631484-1633139:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2938842773438 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 132.86 1 128.01 127.51 128.51 -4.8527 0 0 0 0.22588 1 25520 25520 0.45834 0 1 + 33972 20078 22852 22867 33445 33445 0.22939988766870556 PLPLKRRKRLW 11 Unmodified _PLPLKRRKRLW_ 0 0 0 SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 731.913330078125 2 731.977705 1461.94086 NaN NaN NaN NaN NaN NaN NaN 172.64 1 167.76 167.26 168.26 -4.881 0 0 0 0.23698 1 34283 34283 0.35063 0 1 33973 25787 22853 22868 33446 33446 0.22836361075383138 PLPLLRLLLR 10 Unmodified _PLPLLRLLLR_ 0 0 0 ENST00000414035.5_1_7:100875905-100880680:-|nuORF;ENST00000308344.9_1_7:100875905-100880710:-|nuORF ENST00000414035.5_1_7:100875905-100880680:-|nuORF ENST00000414035.5_1_7:100875905-100880680:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2830200195312 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 162.93 1 157.74 157.24 158.24 -5.1878 0 0 0 0.22588 1 31665 31665 0.45834 0 1 33974 8624 22854 22869 33447 33447 0.22939988766870556 PLPPAKRLRLI 11 Unmodified _PLPPAKRLRLI_ 0 0 0 ENST00000441488.6_1_11:67925157-67938746:-|nuORF;ENSG00000110066|ENST00000304363|KMT5B ENST00000441488.6_1_11:67925157-67938746:-|nuORF ENST00000441488.6_1_11:67925157-67938746:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24993896484375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 158.35 1 153.55 153.05 154.05 -4.7952 0 0 0 0.23698 1 31487 31487 1.4551 0 1 33975 2558 22855 22870 33448 33448 0.21390489652844735 PLPQALEEK 9 Unmodified _PLPQALEEK_ 0 0 0 ENST00000509087.1_1_5:140053844-140054778:-|nuORF ENST00000509087.1_1_5:140053844-140054778:-|nuORF ENST00000509087.1_1_5:140053844-140054778:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 514.2793579101562 2 512.787307 1023.56006 0.20947 0.00010741 -0.19297 -9.8951E-05 0.016499 8.4605E-06 512.7871972103026 154.1 1.0627 154.1 153.62 154.68 0 90 29 4 0 0 0 0.15889 1 30873 30873 22.736 0 1 41273000 33976 10725 22856 22871 33449 33449 0.0492232324043016 PLPSRHWS 8 Unmodified _PLPSRHWS_ 0 0 0 REV__ENST00000367311.4_1_1:201434710-201435094:-|nuORF REV__ENST00000367311.4_1_1:201434710-201435094:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2575988769531 2 490.259051 978.503549 NaN NaN NaN NaN NaN NaN NaN 114.54 1 109.98 109.48 110.48 -4.555 0 0 0 0.22636 1 21990 21990 1.4551 1.2036 1 + 33977 20916 22857 22872 33450 33450 0.013437401944315752 PLQFLFMY 8 Unmodified _PLQFLFMY_ 0 0 0 REV__ENSG00000105131|ENST00000221730|EPHX3 REV__ENSG00000105131|ENST00000221730|EPHX3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 353.8629150390625 3 353.517501 1057.53067 -0.36817 -0.00013016 0.31167 0.00011018 -0.056505 -1.9975E-05 353.51757233169803 16.322 0.5514 16.322 15.922 16.473 0 37 15 3 0 0 0 1.0281 1 2455 2455 0 0 1 1411000 + 33978 14962 22858 22873 33451 33451 0.004210876905972327 PLQFLFMY 8 Unmodified _PLQFLFMY_ 0 0 0 REV__ENSG00000105131|ENST00000221730|EPHX3 REV__ENSG00000105131|ENST00000221730|EPHX3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 353.517501 1057.53067 -0.49509 -0.00017502 0.37017 0.00013086 -0.12493 -4.4164E-05 353.51763791716525 17.507 0.55486 16.196 15.817 16.371 -1.3109 -0.050237 -5.2173E-05 NaN 0 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1144000 + 33979 14962 22858 22873 0.004210876905972327 PLQFLFMY 8 Unmodified _PLQFLFMY_ 0 0 0 REV__ENSG00000105131|ENST00000221730|EPHX3 REV__ENSG00000105131|ENST00000221730|EPHX3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 353.517501 1057.53067 -0.43935 -0.00015532 0.56753 0.00020063 0.12818 4.5315E-05 353.5176589611945 17.493 0.51639 16.221 15.868 16.385 -1.2722 -0.025624 0.00015714 NaN 0 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1020100 + 33980 14962 22858 22873 0.004210876905972327 PLQITELI 8 Unmodified _PLQITELI_ 0 0 0 REV__nc|ENSG00000124587|Q13608-3|PEX6 REV__nc|ENSG00000124587|Q13608-3|PEX6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.16168212890625 2 463.781493 925.548434 0.31094 0.00014421 -0.1113 -5.162E-05 0.19963 9.2587E-05 463.781355535572 145.61 0.62389 140.62 140.27 140.9 -4.981 29 17 2 0 0 0 1.0035 1 28094 28094 6.3541 0 1 2167700 + 33981 15787 22859 22874 33452 33452 0.08268126217080862 PLQLLRLFKLK 11 Unmodified _PLQLLRLFKLK_ 0 0 0 ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;nc|ENSG00000186815|Q9ULQ1-2|TPCN1;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1 ENST00000428632.7_1_12:113682520-113726187:+|nuORF ENST00000428632.7_1_12:113682520-113726187:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 685.5543212890625 2 684.958115 1367.90168 0.70052 0.00047983 -0.25529 -0.00017487 0.44522 0.00030496 684.9588445113136 164.43 0.10254 159.37 159.31 159.41 -5.0648 4 2 2 0 0 0 0.96175 1 32070 32070 2.9952 2.5945 1 4685600 33982 9755 22860 22875 33453 33453 0.2324421600117148 PLQLSTTF 8 Unmodified _PLQLSTTF_ 0 0 0 ENST00000349496.9_1_3:41267059-41267242:+|nuORF ENST00000349496.9_1_3:41267059-41267242:+|nuORF ENST00000349496.9_1_3:41267059-41267242:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7498779296875 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 148.47 1 143.76 143.26 144.26 -4.7095 0 0 0 0.21486 1 29483 29483 10.183 0 1 33983 8922 22861 22876 33454 33454 0.02930980148892104 PLQLVLAFFR 10 Unmodified _PLQLVLAFFR_ 0 0 0 REV__ENST00000504674.1_1_5:39720798-39721572:-|nuORF REV__ENST00000504674.1_1_5:39720798-39721572:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2892456054688 2 602.366059 1202.71756 NaN NaN NaN NaN NaN NaN NaN 159.41 1 159.41 158.91 159.91 0 0 0 0 0.22588 1 32007 32007 9.3831 2.66 1 + 33984 22466 22862 22877 33455 33455 0.12431447570429555 PLQTSYIVG 9 Unmodified _PLQTSYIVG_ 0 0 0 REV__ENST00000521506.1_1_5:171682090-171682429:-|nuORF REV__ENST00000521506.1_1_5:171682090-171682429:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 491.30218505859375 2 489.26875 976.522947 0.12069 5.9052E-05 0.10807 5.2876E-05 0.22877 0.00011193 489.2687559544024 115.19 1.1693 110.72 110.29 111.46 -4.4726 114 33 5 0 0 0 0.26282 1 22739 22739 4.7159 1.1289 1 125270000 + 33985 22647 22863 22878 33456 33456 0.03374651694673503 PLQWSPVPY 9 Unmodified _PLQWSPVPY_ 0 0 0 REV__OR10A4|p.F108Lfs*68|1|0.22|ENSG00000170782|chr11:6876966-6876966|T/-|frameshift_variant REV__OR10A4|p.F108Lfs*68|1|0.22|ENSG00000170782|chr11:6876966-6876966|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7824096679688 2 543.784567 1085.55458 -0.11617 -6.3173E-05 -2.3742 -0.0012911 -2.4904 -0.0013542 543.7832938090773 108.74 0.76752 104.29 103.98 104.75 -4.4518 29 21 2 0 0 0 0.37087 1 20830 20830 1.2148 0.94944 1 2102700 + 33986 24399 22864 22879 33457 33457 0.01522644448596111 PLREIDNIV 9 Unmodified _PLREIDNIV_ 0 0 0 ENPP2|p.K334N|1|0.16|ENSG00000136960|chr8:119593831-119593831|T/G|missense_variant ENPP2|p.K334N|1|0.16|ENSG00000136960|chr8:119593831-119593831|T/G|missense_variant ENPP2|p.K334N|1|0.16|ENSG00000136960|chr8:119593831-119593831|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5594787597656 3 356.873113 1067.59751 0.74081 0.00026438 -0.56625 -0.00020208 0.17456 6.2297E-05 356.8728654488345 24.608 0.44591 22.96 22.719 23.165 -1.6482 39 12 4 0 0 0 0.60489 1 4325 4325 2.4985 0 1 4658400 33987 948 22865 22880 33458 33458 0.06641414506020737 PLRFGGLF 8 Unmodified _PLRFGGLF_ 0 0 0 REV__ENST00000441564.7_1_2:113940824-113940878:+|nuORF REV__ENST00000441564.7_1_2:113940824-113940878:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76397705078125 2 453.763438 905.512323 NaN NaN NaN NaN NaN NaN NaN 145.36 1 140.29 139.79 140.79 -5.0671 0 0 0 0.21486 1 28086 28086 6.3541 0 1 + 33988 21713 22866 22881 33459 33459 0.055787138309028705 PLRGLGNLYKG 11 Unmodified _PLRGLGNLYKG_ 0 0 0 REV__ENST00000593518.1_1_19:4007758-4017708:+|nuORF REV__ENST00000593518.1_1_19:4007758-4017708:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 594.3512573242188 2 594.348397 1186.68224 NaN NaN NaN NaN NaN NaN NaN 68.762 1 65.583 65.083 66.083 -3.1796 0 0 0 0.23324 1 13361 13361 5.7319 1.4026 1 + 33989 14972 22867 22882 33460 33460 0.09636785042653173 PLRLVLLWVLL 11 Unmodified _PLRLVLLWVLL_ 0 0 0 REV__MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant REV__MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 445.7444763183594 3 445.635598 1333.88496 -0.12098 -5.3914E-05 1.1969 0.00053339 1.0759 0.00047947 445.63599906762704 67.038 0.49906 67.038 66.834 67.333 0 29 13 3 0 0 0 0.66313 1 12930 12930 0 0 1 2508900 + 33990 17176 22868 22883 33461 33461 0.2313771511521736 PLRNNYQG 8 Unmodified _PLRNNYQG_ 0 0 0 ENSG00000188636|ENST00000341255|RTL6 ENSG00000188636|ENST00000341255|RTL6 ENSG00000188636|ENST00000341255|RTL6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24542236328125 2 481.246141 960.477728 NaN NaN NaN NaN NaN NaN NaN 117.58 1 117.58 117.08 118.08 0 0 0 0 0.21452 1 23160 23160 13.508 3.3245 1 33991 7183 22869 22884 33462 33462 -0.0040915404786119325 PLRNPLGARAS 11 Unmodified _PLRNPLGARAS_ 0 0 0 REV__nc|ENSG00000205084|Q9H6L2-2|TMEM231 REV__nc|ENSG00000205084|Q9H6L2-2|TMEM231 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3292846679688 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 143.6 1 138.7 138.2 139.2 -4.8982 0 0 0 0.23018 1 27716 27716 8.1555 0 1 + 33992 24242 22870 22885 33463 33463 0.08778730240078403 PLRPPRAYL 9 Unmodified _PLRPPRAYL_ 0 0 0 SAMD11|p.S218Qfs*4|1|0.46|ENSG00000187634|chr1:939401-939402|-/C|frameshift_variant;ENSG00000187634|ENST00000616016|SAMD11 SAMD11|p.S218Qfs*4|1|0.46|ENSG00000187634|chr1:939401-939402|-/C|frameshift_variant SAMD11|p.S218Qfs*4|1|0.46|ENSG00000187634|chr1:939401-939402|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.284912109375 2 541.827101 1081.63965 0.44077 0.00023882 -1.5412 -0.00083508 -1.1005 -0.00059626 541.8260170253111 150.48 0.56055 145.36 145.03 145.59 -5.1204 21 15 2 0 0 0 0.77732 1 29120 29120 7.9102 0 1 2148200 33993 7116 22871 22886 33464 33464 0.10209434705075182 PLRPRLCRL 9 Unmodified _PLRPRLCRL_ 0 0 0 nc|ENSG00000065054|Q15599-2|NHERF2;ENSG00000065054|ENST00000424542|NHERF2 nc|ENSG00000065054|Q15599-2|NHERF2 nc|ENSG00000065054|Q15599-2|NHERF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21820068359375 3 375.23421 1122.6808 NaN NaN NaN NaN NaN NaN NaN 49.546 1 46.547 46.047 47.047 -2.999 0 0 0 0.19622 1 9061 9061 0.96228 0.26461 1 33994 1350 22872 22887 33465 33465 0.12436872472903815 PLRPRLLLLL 10 Unmodified _PLRPRLLLLL_ 0 0 0 nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant nc|ENSG00000088812|O75882-2|ATRN nc|ENSG00000088812|O75882-2|ATRN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2742919921875 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 118.64 1 114.03 113.53 114.53 -4.6106 0 0 0 0.22588 1 22766 22766 1.6526 0 1 33995 1734 22873 22888 33466 33466 0.22939988766893293 PLRPRLLLLL 10 Unmodified _PLRPRLLLLL_ 0 0 0 nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant nc|ENSG00000088812|O75882-2|ATRN nc|ENSG00000088812|O75882-2|ATRN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2874755859375 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 137.66 1 132.74 132.24 133.24 -4.9216 0 0 0 0.22588 1 26463 26463 0.45834 0 1 33996 1734 22873 22888 33467 33467 0.22939988766893293 PLRQKLAAL 9 Unmodified _PLRQKLAAL_ 0 0 0 ENSG00000237412|ENST00000617714|PRSS56 ENSG00000237412|ENST00000617714|PRSS56 ENSG00000237412|ENST00000617714|PRSS56 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.22198486328125 3 337.222076 1008.6444 NaN NaN NaN NaN NaN NaN NaN 19.751 1 18.354 17.854 18.854 -1.3966 0 0 0 0.19682 1 3269 3269 0.40827 0 1 33997 7828 22874 22889 33468 33468 0.14042318847839397 PLRQLKLLLR 10 Unmodified _PLRQLKLLLR_ 0 0 0 REV__ENSG00000204323|ENST00000375215|SMIM5 REV__ENSG00000204323|ENST00000375215|SMIM5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 417.289306640625 3 417.28708 1248.83941 NaN NaN NaN NaN NaN NaN NaN 136.01 1 136.01 135.51 136.51 0 0 0 0 0.22588 1 26949 26949 0.13989 0 1 + 33998 19525 22875 22890 33469 33469 0.22494489652808625 PLRRLQLV 8 Unmodified _PLRRLQLV_ 0 0 0 REV__ENST00000381496.7_1_10:321690-321876:-|nuORF REV__ENST00000381496.7_1_10:321690-321876:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.5594787597656 3 332.222188 993.644734 -0.74919 -0.0002489 0.65472 0.00021751 -0.094471 -3.1385E-05 332.2223602174751 65.409 0.86873 65.409 64.959 65.828 0 77 24 5 0 0 0 8448 1 12607 12607 10.074 0 1 76339000 + 33999 21170 22876 22891 33470 33470 0.14765738567700737 PLRVVRKRVLL 11 Unmodified _PLRVVRKRVLL_ 0 0 0 REV__ENST00000564147.1_1_16:68270758-68271348:-|nuORF REV__ENST00000564147.1_1_16:68270758-68271348:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 675.0030517578125 2 674.966806 1347.91906 NaN NaN NaN NaN NaN NaN NaN 166.37 1 161.42 160.92 161.92 -4.9484 0 0 0 0.23698 1 32593 32593 0.35063 0.043601 1 + 34000 23087 22877 22892 33471 33471 0.25901556326834907 PLRWRPLWRCT 11 Unmodified _PLRWRPLWRCT_ 0 0 0 ENST00000519067.5_1_8:142231692-142231773:-|nuORF ENST00000519067.5_1_8:142231692-142231773:-|nuORF ENST00000519067.5_1_8:142231692-142231773:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3709106445312 2 742.408798 1482.80304 NaN NaN NaN NaN NaN NaN NaN 140.17 1 135.53 135.03 136.03 -4.6439 0 0 0 0.23698 1 27674 27674 1.3295 0.13619 1 34001 10814 22878 22893 33472 33472 0.0809528948445859 PLRWVNFY 8 Unmodified _PLRWVNFY_ 0 0 0 REV__ENST00000557290.1_1_14:58737043-58738610:+|nuORF REV__ENST00000557290.1_1_14:58737043-58738610:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.793212890625 2 547.792727 1093.5709 NaN NaN NaN NaN NaN NaN NaN 54.322 1 51.184 50.684 51.684 -3.1377 0 0 0 0.20568 1 10050 10050 20.871 0.41758 1 + 34002 23009 22879 22894 33473 33473 0.027857704053758425 PLSCEEKE 8 Unmodified _PLSCEEKE_ 0 0 0 ENSG00000083093|ENST00000261584|PALB2;ENST00000567003.1_1_16:23649880-23652544:-|nuORF;PALB2|p.N280Tfs*8|2|0.26|ENSG00000083093|chr16:23635707-23635707|T/-|frameshift_variant;PALB2|p.L1006Ffs*5|1|0.3|ENSG00000083093|chr16:23621457-23621458|-/A|frameshift_variant;PALB2|p.E1010*|1|0.26|ENSG00000083093|chr16:23621448-23621449|-/G|frameshift_variant ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.1438903808594 3 312.144392 933.411348 NaN NaN NaN NaN NaN NaN NaN 110.83 1 106.41 105.91 106.91 -4.4231 0 0 0 0.21486 1 21833 21833 6.7232 0 1 34003 1647 22880 22895 33474 33474 -0.05802150724787225 PLSHFVGY 8 Unmodified _PLSHFVGY_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353210449219 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 131.05 1 126.21 125.71 126.71 -4.8355 0 0 0 0.21486 1 25161 25161 11.114 0 1 34004 7379 22881 22896 33475 33475 -0.002538693027190675 PLSHKFPRLG 10 Unmodified _PLSHKFPRLG_ 0 0 0 REV__ENST00000337619.9_1_7:100803863-100804046:+|nuORF REV__ENST00000337619.9_1_7:100803863-100804046:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3392944335938 2 576.337833 1150.66111 NaN NaN NaN NaN NaN NaN NaN 135.99 1 135.99 135.49 136.49 0 0 0 0 0.22588 1 26944 26944 5.7319 0.43497 1 + 34005 20678 22882 22897 33476 33476 0.09180819733774115 PLSHTLVY 8 Unmodified _PLSHTLVY_ 0 0 0 ENST00000376552.6_1_9:82186909-82187002:+|nuORF ENST00000376552.6_1_9:82186909-82187002:+|nuORF ENST00000376552.6_1_9:82186909-82187002:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2579040527344 2 465.258185 928.501818 0.29632 0.00013787 -0.45923 -0.00021366 -0.16291 -7.5794E-05 465.25799465895733 50.647 0.6143 50.647 50.3 50.914 0 31 17 3 0 0 0 0.6199 1 9571 9571 20.871 0 1 2510800 34006 9252 22883 22898 33477 33477 0.034706863857991266 PLSHTLVY 8 Unmodified _PLSHTLVY_ 0 0 0 ENST00000376552.6_1_9:82186909-82187002:+|nuORF ENST00000376552.6_1_9:82186909-82187002:+|nuORF ENST00000376552.6_1_9:82186909-82187002:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2579650878906 2 465.258185 928.501818 -0.274 -0.00012748 0.19656 9.145E-05 -0.07744 -3.603E-05 465.25820782124237 53.196 0.63279 50.312 49.999 50.632 -2.8837 33 17 3 0 0 0 0.49844 1 10151 10151 28.173 6.4266 1 2781000 34007 9252 22883 22898 33478 33478 0.034706863857991266 PLSILAKKVP 10 Unmodified _PLSILAKKVP_ 0 0 0 MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant;MED12L|p.N1494Rfs*10|1|0.1|ENSG00000144893|chr3:151380219-151380220|-/GAAATAATGCATT|frameshift_variant;MED12L|p.T1760Pfs*44|1|0.42|ENSG00000144893|chr3:151388100-151388100|A/-|frameshift_variant;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L;MED12L|p.K248Nfs*5|1|0.32|ENSG00000144893|chr3:151158702-151158702|A/-|frameshift_variant;nc|ENSG00000144893|Q86YW9-2|MED12L;nc|ENSG00000144893|Q86YW9-3|MED12L;MED12L|p.S1098Pfs*15|1|0.19|ENSG00000144893|chr3:151367711-151367711|T/-|frameshift_variant;MED12L|p.S1098Ffs*63|1|0.23|ENSG00000144893|chr3:151367710-151367711|-/T|frameshift_variant MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2620239257812 2 533.35516 1064.69577 NaN NaN NaN NaN NaN NaN NaN 165.09 1 160.11 159.61 160.61 -4.9811 0 0 0 0.22588 1 32243 32243 7.2892 2.5332 1 34008 4583 22884 22899 33479 33479 0.16600642821890688 PLSKELGFS 9 Unmodified _PLSKELGFS_ 0 0 0 GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant;GPR156|p.L789Wfs*15|1|0.18|ENSG00000175697|chr3:120167113-120167113|C/-|frameshift_variant;nc|ENSG00000175697|Q8NFN8-2|GPR156;ENSG00000175697|ENST00000464295|GPR156 GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2539978027344 2 489.26875 976.522947 0.12069 5.9052E-05 0.10807 5.2876E-05 0.22877 0.00011193 489.2687559544024 115.19 1.1693 110.72 110.29 111.46 -4.4726 114 33 5 0 0 0 0.38188 2 22633 22633;22654 26.884 8.7487 1 125270000 34009 6427 22885 22900 33480;33481 33480 0.03374651694673503 PLSKELGFS 9 Unmodified _PLSKELGFS_ 0 0 0 GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant;GPR156|p.L789Wfs*15|1|0.18|ENSG00000175697|chr3:120167113-120167113|C/-|frameshift_variant;nc|ENSG00000175697|Q8NFN8-2|GPR156;ENSG00000175697|ENST00000464295|GPR156 GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2570495605469 2 489.26875 976.522947 0.33794 0.00016534 -0.12351 -6.0431E-05 0.21442 0.00010491 489.2686277154148 115.3 1.4656 110.75 110.33 111.79 -4.555 122 41 5 0 0 0 0.38188 1 22079 22079 26.884 5.137 1 84306000 34010 6427 22885 22900 33482 33482 0.03374651694673503 PLSKELGFS 9 Unmodified _PLSKELGFS_ 0 0 0 GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant;GPR156|p.L789Wfs*15|1|0.18|ENSG00000175697|chr3:120167113-120167113|C/-|frameshift_variant;nc|ENSG00000175697|Q8NFN8-2|GPR156;ENSG00000175697|ENST00000464295|GPR156 GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27252197265625 2 489.26875 976.522947 0.27292 0.00013353 -0.10128 -4.9551E-05 0.17165 8.3981E-05 489.26864486926365 115.09 1.2996 110.78 110.31 111.61 -4.3136 124 36 5 0 0 0 0.38188 1 22107 22107 26.884 8.7487 1 87505000 34011 6427 22885 22900 33483 33483 0.03374651694673503 PLSKKVVSA 9 Unmodified _PLSKKVVSA_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1;EHBP1|p.T756Qfs*17|1|0.44|ENSG00000115504|chr2:62949001-62949001|A/-|frameshift_variant;ENST00000494958.1_1_2:62934317-63053404:+|nuORF;EHBP1|p.N344Ifs*2|1|0.38|ENSG00000115504|chr2:62864894-62864894|A/-|frameshift_variant ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2503967285156 2 464.794935 927.575317 0.3339 0.00015519 -0.35724 -0.00016604 -0.023338 -1.0847E-05 464.7947459199465 88.588 0.54221 84.593 84.362 84.904 -3.9953 19 15 2 0 0 0 0.76312 1 16898 16898 11.495 5.7629 1 1318200 34012 2859 22886 22901 33484 33484 0.10863234828275381 PLSLDSLTT 9 Unmodified _PLSLDSLTT_ 0 0 0 REV__ENST00000552233.5_1_12:53819491-53823243:+|nuORF REV__ENST00000552233.5_1_12:53819491-53823243:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1812438964844 3 316.174569 945.501877 NaN NaN NaN NaN NaN NaN NaN 139.28 1 134.43 133.93 134.93 -4.8492 0 0 0 0.23508 1 26848 26848 0.96228 0 1 + 34013 20144 22887 22902 33485 33485 0.026946415951329072 PLSLLSGRL 9 Unmodified _PLSLLSGRL_ 0 0 0 REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.80126953125 2 478.300384 954.586216 -0.070722 -3.3826E-05 0.0083398 3.9889E-06 -0.062382 -2.9837E-05 478.3003773337779 156.88 0.58144 156.88 156.48 157.07 0 29 16 2 0 0 0 0.095246 1 31436 31436 11.749 0 1 3705800 + 34014 22271 22888 22903 33486 33486 0.10710637202578255 PLSLLYNRA 9 Unmodified _PLSLLYNRA_ 0 0 0 REV__ENSG00000100030|ENST00000215832|MAPK1 REV__ENSG00000100030|ENST00000215832|MAPK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6957397460938 2 523.803291 1045.59203 NaN NaN NaN NaN NaN NaN NaN 165.52 1 160.54 160.04 161.04 -4.9811 0 0 0 0.19684 1 32360 32360 0.40827 0 1 + 34015 14657 22889 22904 33487 33487 0.07105735714230832 PLSQEEVI 8 Unmodified _PLSQEEVI_ 0 0 0 KCNC3|p.A649S|1|0.18|ENSG00000131398|chr19:50323008-50323008|C/A|missense_variant KCNC3|p.A649S|1|0.18|ENSG00000131398|chr19:50323008-50323008|C/A|missense_variant KCNC3|p.A649S|1|0.18|ENSG00000131398|chr19:50323008-50323008|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23883056640625 2 457.745108 913.475663 0.70268 0.00032165 -3.2911 -0.0015065 -2.5884 -0.0011848 457.74486226188145 101.46 0.94974 101.46 100.79 101.74 0 55 26 3 0 0 0 0.58432 1 19840 19840 23.148 0 1 2672300 34016 11980 22890 22905 33488 33488 0.015463724236610688 PLSRLLAALP 10 Unmodified _PLSRLLAALP_ 0 0 0 ENST00000527132.1_1_11:11985552-11985876:-|nuORF ENST00000527132.1_1_11:11985552-11985876:-|nuORF ENST00000527132.1_1_11:11985552-11985876:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 526.0747680664062 2 525.837134 1049.65972 NaN NaN NaN NaN NaN NaN NaN 162.95 1 158.16 157.66 158.66 -4.7898 0 0 0 2.8426 1 32447 32447 0.063865 0 1 34017 10925 22891 22906 33489 33489 0.13687185645017053 PLSRPSHL 8 Unmodified _PLSRPSHL_ 0 0 0 ENST00000262738.7_1_22:46932303-46932903:-|nuORF ENST00000262738.7_1_22:46932303-46932903:-|nuORF ENST00000262738.7_1_22:46932303-46932903:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.761474609375 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 152.51 1 147.28 146.78 147.78 -5.2365 0 0 0 0.23487 1 29569 29569 0.12286 0 1 34018 8316 22892 22907 33490 33490 0.051766243371730525 PLSSHPSRY 9 Unmodified _PLSSHPSRY_ 0 0 0 AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.267822265625 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 167.38 1 162.59 162.09 163.09 -4.7898 0 0 0 0.19638 1 33750 33750 0.073264 0 1 34019 145 22893 22908 33491 33491 3.401640651645721E-05 PLSSHPSRY 9 Unmodified _PLSSHPSRY_ 0 0 0 AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.268310546875 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 167.76 1 162.87 162.37 163.37 -4.8916 0 0 0 0.19711 1 33030 33030 0.073264 0 1 34020 145 22893 22908 33492 33492 3.401640651645721E-05 PLSVSSTV 8 Unmodified _PLSVSSTV_ 0 0 0 ENST00000571688.5_2_16:11643218-11643479:-|nuORF ENST00000571688.5_2_16:11643218-11643479:-|nuORF ENST00000571688.5_2_16:11643218-11643479:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 395.22503662109375 2 395.221268 788.427984 NaN NaN NaN NaN NaN NaN NaN 50.754 1 47.709 47.209 48.209 -3.0453 0 0 0 0.21486 1 9306 9306 9.3474 0 1 34021 11424 22894 22909 33493 33493 0.02530718223488293 PLTADYHL 8 Unmodified _PLTADYHL_ 0 0 0 REV__nc|ENSG00000125459|Q9BUK6-5|MSTO1 REV__nc|ENSG00000125459|Q9BUK6-5|MSTO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.23809814453125 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 120.82 1 120.82 120.32 121.32 0 0 0 0 0.21486 1 23814 23814 10.183 1.5901 1 + 34022 15815 22895 22910 33494 33494 -0.001661905109244799 PLTADYHL 8 Unmodified _PLTADYHL_ 0 0 0 REV__nc|ENSG00000125459|Q9BUK6-5|MSTO1 REV__nc|ENSG00000125459|Q9BUK6-5|MSTO1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2381286621094 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 125.65 1 120.88 120.38 121.38 -4.7681 0 0 0 0.21181 1 24114 24114 15.768 5.5848 1 + 34023 15815 22895 22910 33495 33495 -0.001661905109244799 PLTAEGPG 8 Unmodified _PLTAEGPG_ 0 0 0 REV__ENST00000357052.7_1_19:41292855-41302674:+|nuORF REV__ENST00000357052.7_1_19:41292855-41302674:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3809204101562 1 741.377746 740.370469 0.68697 0.00050931 -0.38952 -0.00028878 0.29746 0.00022053 741.3773026489931 79.461 0.56652 75.951 75.692 76.259 -3.5102 20 15 2 0 0 0 8448 1 15508 15508 2.643 0 1 2533500 + 34024 20820 22896 22911 33496 33496 -0.010101239820869523 PLTAEGPG 8 Unmodified _PLTAEGPG_ 0 0 0 REV__ENST00000357052.7_1_19:41292855-41302674:+|nuORF REV__ENST00000357052.7_1_19:41292855-41302674:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.377685546875 1 741.377746 740.370469 0.096352 7.1433E-05 -0.23495 -0.00017419 -0.1386 -0.00010275 741.3775396268634 79.633 0.38458 75.957 75.727 76.111 -3.676 17 10 2 0 0 0 8448 1 15159 15159 4.2837 0 1 2014300 + 34025 20820 22896 22911 33497 33497 -0.010101239820869523 PLTAGGAISE 10 Unmodified _PLTAGGAISE_ 0 0 0 ENSG00000117222|ENST00000264515|RBBP5 ENSG00000117222|ENST00000264515|RBBP5 ENSG00000117222|ENST00000264515|RBBP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2248229980469 2 458.242732 914.470912 0.30321 0.00013895 0.49559 0.0002271 0.7988 0.00036605 458.2430133777562 28.388 1.8803 28.388 27.801 29.681 0 155 53 5 0 0 0 0.23583 1 5177 5177 5.8681 5.0232 1 86017000 34026 2979 22897 22912 33498 33498 0.010254882809022092 PLTAGGAISE 10 Unmodified _PLTAGGAISE_ 0 0 0 ENSG00000117222|ENST00000264515|RBBP5 ENSG00000117222|ENST00000264515|RBBP5 ENSG00000117222|ENST00000264515|RBBP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2351379394531 2 458.242732 914.470912 0.28314 0.00012975 0.26822 0.00012291 0.55135 0.00025265 458.24283143633727 30.194 1.8549 28.301 27.651 29.506 -1.8928 165 52 5 0 0 0 0.23583 1 5267 5267 3.5927 3.0763 1 75773000 34027 2979 22897 22912 33499 33499 0.010254882809022092 PLTGRREA 8 Unmodified _PLTGRREA_ 0 0 0 ENST00000372324.5_1_1:44444922-44446927:+|nuORF;ENST00000497866.5_1_1:44444922-44446927:+|nuORF ENST00000372324.5_1_1:44444922-44446927:+|nuORF ENST00000372324.5_1_1:44444922-44446927:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.2563171386719 2 450.256508 898.498464 NaN NaN NaN NaN NaN NaN NaN 159.91 1 154.65 154.15 155.15 -5.2526 0 0 0 0.21486 1 31030 31030 10.183 0 1 34028 9176 22898 22913 33500 33500 0.04515436331791989 PLTKSLQRG 9 Unmodified _PLTKSLQRG_ 0 0 0 FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant;ENSG00000073910|ENST00000542859|FRY;FRY|p.L1623Wfs*22|1|0.44|ENSG00000073910|chr13:32224331-32224331|C/-|frameshift_variant;FRY|p.T871Hfs*25|1|0.22|ENSG00000073910|chr13:32178361-32178362|-/C|frameshift_variant;FRY|p.Y414Lfs*6|1|0.27|ENSG00000073910|chr13:32147339-32147340|-/T|frameshift_variant FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 500.80267333984375 2 500.300916 998.587279 0.1882 9.4158E-05 0.26422 0.00013219 0.45242 0.00022635 500.8012224591843 119.59 0.21148 119.59 119.48 119.69 0 6 5 2 0 0 0 0.47592 1 23588 23588 17.113 4.8722 1 914340 34029 1489 22899 22914 33501 33501 0.08792851571479332 PLTSGLHYYT 10 Unmodified _PLTSGLHYYT_ 0 0 0 ENSG00000155530|ENST00000285928|LRGUK ENSG00000155530|ENST00000285928|LRGUK ENSG00000155530|ENST00000285928|LRGUK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3392333984375 2 576.290214 1150.56587 0.39891 0.00022989 -0.093991 -5.4166E-05 0.30492 0.00017572 576.2902503609396 126.04 0.72543 121.27 120.94 121.66 -4.7681 47 20 3 0 0 0 0.57735 1 24138 24138 20.454 4.3045 1 9428800 34030 5049 22900 22915 33502 33502 -0.0033857824791994062 PLTSLLQLH 9 Unmodified _PLTSLLQLH_ 0 0 0 PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 510.7295227050781 2 511.305667 1020.59678 0.20469 0.00010466 -0.021773 -1.1133E-05 0.18291 9.3524E-05 511.3055336343487 141.94 0.79829 141.94 141.57 142.37 0 55 22 3 0 0 0 0.77732 1 28227 28227 12.532 4.6214 1 13843000 34031 12828 22901 22916 33503 33503 0.08730619856999056 PLTSLLQLH 9 Unmodified _PLTSLLQLH_ 0 0 0 PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 511.305667 1020.59678 -0.040268 -2.0589E-05 0.40966 0.00020946 0.36939 0.00018887 511.3057144787967 146.43 0.93146 141.75 141.23 142.16 -4.6868 -0.059576 0.00019154 NaN 12.532 61 26 3 NaN NaN NaN NaN 0 NaN NaN 0 9830100 34032 12828 22901 22916 0.08730619856999056 PLTSLLQLH 9 Unmodified _PLTSLLQLH_ 0 0 0 PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 511.305667 1020.59678 -0.34166 -0.00017469 0.64332 0.00032893 0.30166 0.00015424 511.30583768113485 146.93 0.79337 141.82 141.38 142.17 -5.1108 0.0094347 0.00043049 NaN 12.532 53 22 3 NaN NaN NaN NaN 0 NaN NaN 0 7241500 34033 12828 22901 22916 0.08730619856999056 PLTSLLQLH 9 Unmodified _PLTSLLQLH_ 0 0 0 PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 511.305667 1020.59678 0.27718 0.00014172 -0.071397 -3.6506E-05 0.20578 0.00010522 511.30551717686717 146.72 0.91522 141.72 141.23 142.14 -5 -0.08353 -0.00030039 NaN 12.532 55 25 3 NaN NaN NaN NaN 0 NaN NaN 0 7893300 34034 12828 22901 22916 0.08730619856999056 PLTVTHPVV 9 Unmodified _PLTVTHPVV_ 0 0 0 ENSG00000175899|ENST00000318602|A2M ENSG00000175899|ENST00000318602|A2M ENSG00000175899|ENST00000318602|A2M MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7784118652344 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 122.61 1 117.88 117.38 118.38 -4.731 0 0 0 0.20155 1 23549 23549 23.148 2.6948 1 34035 6440 22902 22917 33504 33504 0.07734948311224343 PLTVWMFTYYE 11 Unmodified _PLTVWMFTYYE_ 0 0 0 REV__ENST00000503463.5_1_17:46908399-46925578:+|nuORF REV__ENST00000503463.5_1_17:46908399-46925578:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 483.9094543457031 3 483.896818 1448.66863 NaN NaN NaN NaN NaN NaN NaN 142.16 1 137.51 137.01 138.01 -4.656 0 0 0 0.23698 1 28096 28096 1.4551 0.12547 1 + 34036 16330 22903 22918 33505 33505 -0.037762535714364276 PLVDIETE 8 Unmodified _PLVDIETE_ 0 0 0 ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2386474609375 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 113.66 1 109.21 108.71 109.71 -4.4539 0 0 0 0.21486 1 22393 22393 5.2307 0 1 34037 4134 22904 22919 33506 33506 -0.0009733381322121204 PLVHGMTPQF 10 Unmodified _PLVHGMTPQF_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 376.196533203125 3 376.19531 1125.5641 NaN NaN NaN NaN NaN NaN NaN 79.839 1 79.839 79.339 80.339 0 0 0 0 2.8426 1 15539 15539 0.063865 0 1 34038 7379 22905 22920 33507 33507 0.006340894624827342 PLVILVIALID 11 Unmodified _PLVILVIALID_ 0 0 0 REV__nc|ENSG00000109956|Q9P2W7-2|B3GAT1 REV__nc|ENSG00000109956|Q9P2W7-2|B3GAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2683715820312 2 589.891575 1177.7686 0.34347 0.00020261 3.5019 0.0020658 3.8454 0.0022684 589.8932544561028 126.62 0.1044 126.62 126.54 126.64 0 4 2 2 0 0 0 0.81736 1 24980 24980 1.3295 0.87119 1 1411800 + 34039 15183 22906 22921 33508 33508 0.18682351824645593 PLVIVPPL 8 Unmodified _PLVIVPPL_ 0 0 0 nc|ENSG00000135637|Q17RM4-3|CCDC142;nc|ENSG00000135637|Q17RM4-2|CCDC142;ENSG00000135637|ENST00000393965|CCDC142 nc|ENSG00000135637|Q17RM4-3|CCDC142 nc|ENSG00000135637|Q17RM4-3|CCDC142 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25189208984375 2 424.286214 846.557876 -0.35372 -0.00015008 0.17699 7.5094E-05 -0.17673 -7.4983E-05 424.28654125357514 55.177 0.75656 52.294 51.94 52.696 -2.8837 46 21 3 0 0 0 8448 1 10636 10636 0.0082765 0 1 6769700 34040 3942 22907 22922 33509 33509 0.12845939293276842 PLVKRRRLL 9 Unmodified _PLVKRRRLL_ 0 0 0 ENSG00000198883|ENST00000535214|PNMA5 ENSG00000198883|ENST00000535214|PNMA5 ENSG00000198883|ENST00000535214|PNMA5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3193969726562 2 575.898392 1149.78223 NaN NaN NaN NaN NaN NaN NaN 31.046 1 28.929 28.429 29.429 -2.1167 0 0 0 0.23508 1 5624 5624 0.6015 0 1 34041 7513 22908 22923 33510 33510 0.21333067167120134 PLVLGLIVIK 10 Unmodified _PLVLGLIVIK_ 0 0 0 REV__CCR5|p.L207Q|1|0.12|ENSG00000160791|chr3:46373522-46373522|T/A|missense_variant REV__CCR5|p.L207Q|1|0.12|ENSG00000160791|chr3:46373522-46373522|T/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.275146484375 2 532.875728 1063.7369 0.37348 0.00019902 4.0652 0.0021663 4.4387 0.0023653 533.3799656326219 146.62 0.21242 141.62 141.5 141.71 -5 6 5 2 0 0 0 1.1333 1 28380 28380 0.043787 0 1 3172100 + 34042 13315 22909 22924 33511 33511 0.20758403861350416 PLVLKGLLIV 10 Unmodified _PLVLKGLLIV_ 0 0 0 REV__nc|ENSG00000113361|P55285-2|CDH6 REV__nc|ENSG00000113361|P55285-2|CDH6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 532.9264526367188 2 532.875728 1063.7369 NaN NaN NaN NaN NaN NaN NaN 172.48 1 172.48 171.98 172.98 0 0 0 0 2.8426 1 35610 35610 0.26539 0.20152 1 + 34043 24003 22910 22925 33512 33512 0.20758403861373154 PLVMPPPR 8 Unmodified _PLVMPPPR_ 0 0 0 ENST00000463414.5_2_7:150758587-150759062:+|nuORF ENST00000463414.5_2_7:150758587-150759062:+|nuORF ENST00000463414.5_2_7:150758587-150759062:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7658996582031 2 453.765123 905.515694 NaN NaN NaN NaN NaN NaN NaN 144.98 1 140.31 139.81 140.81 -4.6694 0 0 0 0.21486 1 28728 28728 5.7604 0 1 34044 10101 22911 22926 33513 33513 0.059156406132501616 PLVMRRGS 8 Unmodified _PLVMRRGS_ 0 0 0 ENST00000473034.5_1_2:219533245-219536693:-|nuORF ENST00000473034.5_1_2:219533245-219536693:-|nuORF ENST00000473034.5_1_2:219533245-219536693:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.7651672363281 2 458.263279 914.512005 0.14288 6.5477E-05 0.99503 0.00045598 1.1379 0.00052146 458.2636261279328 168.93 0.96249 164.14 163.76 164.72 -4.7898 42 27 2 0 0 0 8448 1 34266 34266 0.30703 0.30703 1 19473000 34045 10234 22912 22927 33514 33514 0.05132970839395057 PLVMRRGS 8 Unmodified _PLVMRRGS_ 0 0 0 ENST00000473034.5_1_2:219533245-219536693:-|nuORF ENST00000473034.5_1_2:219533245-219536693:-|nuORF ENST00000473034.5_1_2:219533245-219536693:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.263279 914.512005 0.14288 6.5477E-05 0.99503 0.00045598 1.1379 0.00052146 458.2636261279328 168.93 0.96249 164.14 163.76 164.72 -4.7898 -0.064313 0.00010257 NaN 0.30703 42 27 2 NaN NaN NaN NaN 0 NaN NaN 0 19473000 34046 10234 22912 22927 0.05132970839395057 PLVRKVRAR 9 Unmodified _PLVRKVRAR_ 0 0 0 REV__PNMT|p.H210Tfs*20|1|0.23|ENSG00000141744|chr17:39670162-39670162|G/-|frameshift_variant REV__PNMT|p.H210Tfs*20|1|0.23|ENSG00000141744|chr17:39670162-39670162|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7794799804688 2 547.867092 1093.71963 NaN NaN NaN NaN NaN NaN NaN 162.12 1 156.97 156.47 157.47 -5.1438 0 0 0 0.19632 1 31490 31490 0.073264 0 1 + 34047 16650 22913 22928 33515 33515 0.17651921098922685 PLVRLAKKVLH 11 Unmodified _PLVRLAKKVLH_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2662353515625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 49.077 1 49.077 48.577 49.577 0 0 0 0 0.23698 1 9274 9274 0.50596 0 1 + 34048 15443 22914 22929 33516 33516 0.21390489652844735 PLVRLAKKVLH 11 Unmodified _PLVRLAKKVLH_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2508544921875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 58.283 1 58.283 57.783 58.783 0 0 0 0 0.23698 1 11149 11149 0.50596 0 1 + 34049 15443 22914 22929 33517 33517 0.21390489652844735 PLVRLAKKVLH 11 Unmodified _PLVRLAKKVLH_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25225830078125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 121.73 1 117.18 116.68 117.68 -4.5476 0 0 0 0.23698 1 23993 23993 1.4551 0.94916 1 + 34050 15443 22914 22929 33518 33518 0.21390489652844735 PLVRLAKKVLH 11 Unmodified _PLVRLAKKVLH_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2536926269531 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 104.33 1 99.985 99.485 100.48 -4.346 0 0 0 0.23698 1 19987 19987 0.50596 0 1 + 34051 15443 22914 22929 33519 33519 0.21390489652844735 PLVRLAKKVLH 11 Unmodified _PLVRLAKKVLH_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2371520996094 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 132.26 1 127.41 126.91 127.91 -4.8527 0 0 0 0.23698 1 25406 25406 0.50596 0 1 + 34052 15443 22914 22929 33520 33520 0.21390489652844735 PLVRLAKKVLH 11 Unmodified _PLVRLAKKVLH_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2450256347656 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 132.6 1 127.75 127.25 128.25 -4.8527 0 0 0 0.22632 1 25471 25471 0.094841 0 1 + 34053 15443 22914 22929 33521 33521 0.21390489652844735 PLVRLAKKVLH 11 Unmodified _PLVRLAKKVLH_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25372314453125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 74.205 1 70.611 70.111 71.111 -3.594 0 0 0 0.23698 1 14091 14091 0.50596 0.34663 1 + 34054 15443 22914 22929 33522 33522 0.21390489652844735 PLVRLAKKVLH 11 Unmodified _PLVRLAKKVLH_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23590087890625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 132.38 1 127.58 127.08 128.08 -4.799 0 0 0 0.23698 1 25484 25484 0.50596 0 1 + 34055 15443 22914 22929 33523 33523 0.21390489652844735 PLVRRLRR 8 Unmodified _PLVRRLRR_ 0 0 0 REV__ENST00000529712.5_1_11:47736424-47736610:-|nuORF REV__ENST00000529712.5_1_11:47736424-47736610:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2648315429688 2 533.359434 1064.70431 NaN NaN NaN NaN NaN NaN NaN 139.64 1 135 134.5 135.5 -4.6439 0 0 0 0.21486 1 27569 27569 0.79363 0 1 + 34056 22746 22915 22930 33524 33524 0.17455054301740347 PLVTGVEHQ 9 Unmodified _PLVTGVEHQ_ 0 0 0 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2638854980469 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 59.217 1 59.217 58.717 59.717 0 0 0 0 0.20155 1 11345 11345 23.148 8.3102 1 34057 5207 22916 22931 33525 33525 0.023328834091330464 PLVVKIKRK 9 Unmodified _PLVVKIKRK_ 0 0 0 REV__SLC26A7|p.K333Nfs*20|5|0.37|ENSG00000147606|chr8:91340519-91340519|A/-|frameshift_variant REV__SLC26A7|p.K333Nfs*20|5|0.37|ENSG00000147606|chr8:91340519-91340519|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2725219726562 2 540.884419 1079.75428 0.29752 0.00016092 1.3181 0.00071294 1.6156 0.00087386 541.3860412340858 126.74 0.18016 126.74 126.6 126.78 0 6 4 2 0 0 0 0.88433 1 25001 25001 0.6015 0 1 1450900 + 34058 16945 22917 22932 33526 33526 0.21759744187011165 PLVVKIKRK 9 Unmodified _PLVVKIKRK_ 0 0 0 REV__SLC26A7|p.K333Nfs*20|5|0.37|ENSG00000147606|chr8:91340519-91340519|A/-|frameshift_variant REV__SLC26A7|p.K333Nfs*20|5|0.37|ENSG00000147606|chr8:91340519-91340519|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 540.5695190429688 2 540.884419 1079.75428 NaN NaN NaN NaN NaN NaN NaN 162.99 1 158.2 157.7 158.7 -4.7898 0 0 0 0.23508 1 32460 32460 0.6015 0 1 + 34059 16945 22917 22932 33527 33527 0.21759744187011165 PLVWLRKL 8 Unmodified _PLVWLRKL_ 0 0 0 REV__KCTD21|p.V211L|1|0.41|ENSG00000188997|chr11:78173924-78173924|C/G|missense_variant REV__KCTD21|p.V211L|1|0.41|ENSG00000188997|chr11:78173924-78173924|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.1595153808594 3 342.22705 1023.65932 NaN NaN NaN NaN NaN NaN NaN 56.145 1 56.145 55.645 56.645 0 0 0 0 0.21486 1 10721 10721 1.8442 0 1 + 34060 23706 22918 22933 33528 33528 0.14843810715854033 PLWFLFTY 8 Unmodified _PLWFLFTY_ 0 0 0 REV__SLC37A1|p.K364Rfs*22|1|0.24|ENSG00000160190|chr21:42563829-42563829|A/-|frameshift_variant REV__SLC37A1|p.K364Rfs*22|1|0.24|ENSG00000160190|chr21:42563829-42563829|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7847290039062 2 543.786579 1085.5586 NaN NaN NaN NaN NaN NaN NaN 120.15 1 120.15 119.65 120.65 0 0 0 0 0.21323 1 23680 23680 14.582 2.9414 1 + 34061 17400 22919 22934 33529 33529 0.01924733942360035 PLWKVTAF 8 Unmodified _PLWKVTAF_ 0 0 0 CLDN9|p.G37D|1|0.33|ENSG00000213937|chr16:3013472-3013472|G/A|missense_variant;ENSG00000213937|ENST00000445369|CLDN9 CLDN9|p.G37D|1|0.33|ENSG00000213937|chr16:3013472-3013472|G/A|missense_variant CLDN9|p.G37D|1|0.33|ENSG00000213937|chr16:3013472-3013472|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24224853515625 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 130.41 1 125.64 125.14 126.14 -4.7725 0 0 0 0.21486 1 25097 25097 11.114 0.93107 1 34062 572 22920 22935 33530 33530 0.06143867145146942 PLWLLRLSP 9 Unmodified _PLWLLRLSP_ 0 0 0 ENST00000409419.5_1_19:40884091-40884373:+|nuORF ENST00000409419.5_1_19:40884091-40884373:+|nuORF ENST00000409419.5_1_19:40884091-40884373:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.79345703125 2 547.839677 1093.6648 NaN NaN NaN NaN NaN NaN NaN 150.15 1 150.15 149.65 150.65 0 0 0 0 0.23508 1 30061 30061 7.2892 0.56607 1 34063 9563 22921 22936 33531 33531 0.12171489507659317 PLWLRPWSRWS 11 Unmodified _PLWLRPWSRWS_ 0 0 0 ENST00000575234.1_1_16:3355499-3356027:+|nuORF ENST00000575234.1_1_16:3355499-3356027:+|nuORF ENST00000575234.1_1_16:3355499-3356027:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.400634765625 2 742.401496 1482.78844 NaN NaN NaN NaN NaN NaN NaN 68.119 1 64.582 64.082 65.082 -3.5362 0 0 0 0.23698 1 12792 12792 1.3295 0 1 34064 11451 22922 22937 33532 33532 0.06635540607953772 PLWQIRKRARK 11 Unmodified _PLWQIRKRARK_ 0 0 0 REV__ENST00000530122.1_1_20:57266543-57280604:+|nuORF REV__ENST00000530122.1_1_20:57266543-57280604:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 726.456787109375 2 726.457136 1450.89972 NaN NaN NaN NaN NaN NaN NaN 68.46 1 65.28 64.78 65.78 -3.1796 0 0 0 0.23698 1 13297 13297 0.30703 0 1 + 34065 22750 22923 22938 33533 33533 0.19230600035893985 PLWRLGRV 8 Unmodified _PLWRLGRV_ 0 0 0 REV__ENST00000552810.5_1_12:88535679-88535862:-|nuORF REV__ENST00000552810.5_1_12:88535679-88535862:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 498.75384521484375 2 498.808711 995.602869 NaN NaN NaN NaN NaN NaN NaN 129.44 1 124.81 124.31 125.31 -4.6292 0 0 0 0.2396 1 25511 25511 0.0082765 0.0082765 1 + 34066 22951 22924 22939 33534 33534 0.1048918287918923 PLYHEMRFYSV 11 Unmodified _PLYHEMRFYSV_ 0 0 0 REV__nc|ENSG00000163629|Q12923-2|PTPN13 REV__nc|ENSG00000163629|Q12923-2|PTPN13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23681640625 3 481.235945 1440.68601 NaN NaN NaN NaN NaN NaN NaN 114.43 1 109.87 109.37 110.37 -4.555 0 0 0 0.22632 1 21970 21970 1.4551 1.4289 1 + 34067 17593 22925 22940 33535 33535 -0.01670913245789052 PMAENPPPPP 10 Unmodified _PMAENPPPPP_ 0 0 0 nc|ENSG00000165244|Q7RTV3-2|ZNF367;ENSG00000165244|ENST00000375256|ZNF367 nc|ENSG00000165244|Q7RTV3-2|ZNF367 nc|ENSG00000165244|Q7RTV3-2|ZNF367 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6851806640625 2 523.75241 1045.49027 NaN NaN NaN NaN NaN NaN NaN 24.817 1 23.169 22.669 23.669 -1.6482 0 0 0 0.22552 1 4335 4335 18.135 5.6034 1 34068 5613 22926 22941 33536 33536 -0.03065878699840141 PMAGTSWR 8 Unmodified _PMAGTSWR_ 0 0 0 ENST00000489818.5_1_1:182354893-182357872:-|nuORF ENST00000489818.5_1_1:182354893-182357872:-|nuORF ENST00000489818.5_1_1:182354893-182357872:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7501220703125 2 453.218537 904.422522 -0.29528 -0.00013383 0.62233 0.00028205 0.32704 0.00014822 453.2188102276386 52.359 0.96011 49.477 48.934 49.894 -2.8824 47 27 2 0 0 0 0.47546 1 9930 9930 36.044 0 1 2443400 34069 10505 22927 22942 33537 33537 -0.03351283839981534 PMAPSSQR 8 Unmodified _PMAPSSQR_ 0 0 0 REV__TNIK|p.S560Ifs*2|1|0.05|ENSG00000154310|chr3:171128809-171128810|-/T|frameshift_variant REV__TNIK|p.S560Ifs*2|1|0.05|ENSG00000154310|chr3:171128809-171128810|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2271423339844 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 74.386 1 74.386 73.886 74.886 0 0 0 0 0.23182 1 14442 14442 3.5871 1.8448 1 + 34070 17177 22928 22943 33538 33538 -0.023875877025943737 PMDWPEKY 8 Unmodified _PMDWPEKY_ 0 0 0 ENSG00000198934|ENST00000361470|MAGEE1;MAGEE1|p.E715*|1|0.29|ENSG00000198934|chrX:76430066-76430067|-/T|frameshift_variant;MAGEE1|p.F714Lfs*74|1|0.78|ENSG00000198934|chrX:76430067-76430067|T/-|frameshift_variant ENSG00000198934|ENST00000361470|MAGEE1 ENSG00000198934|ENST00000361470|MAGEE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2708740234375 2 533.239135 1064.46372 0.41436 0.00022095 -2.0716 -0.0011047 -1.6572 -0.0008837 533.2382647936049 34.462 0.10674 32.247 32.193 32.299 -2.2158 4 2 2 0 0 0 0.89687 1 6044 6044 3.2813 0.78282 1 297970 34071 7529 22929 22944 33539 33539 -0.06593567591175997 PMEHHGDPN 9 Unmodified _PMEHHGDPN_ 0 0 0 ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.1520080566406 3 345.143386 1032.40833 NaN NaN NaN NaN NaN NaN NaN 112.23 1 107.7 107.2 108.2 -4.5259 0 0 0 0.23508 1 21543 21543 1.1933 0 1 34072 1241 22930 22945 33540 33540 -0.10657981058920996 PMEKIISQCR 10 Unmodified _PMEKIISQCR_ 0 0 0 nc|ENSG00000133835|P51659-2|HSD17B4 nc|ENSG00000133835|P51659-2|HSD17B4 nc|ENSG00000133835|P51659-2|HSD17B4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2933349609375 2 602.812476 1203.6104 -0.35129 -0.00021176 1.1343 0.00068377 0.783 0.000472 602.8131939925953 23.337 0.41513 21.548 21.358 21.773 -1.7886 32 11 4 0 0 0 0.91149 1 3773 3773 6.2058 0.97511 1 7091500 34073 12333 22931 22946 33541 33541 0.01673786302285407 PMGPGCPA 8 Unmodified _PMGPGCPA_ 0 0 0 REV__ENST00000278903.10_1_11:125439309-125439432:+|nuORF REV__ENST00000278903.10_1_11:125439309-125439432:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 365.1504211425781 2 365.15656 728.298567 NaN NaN NaN NaN NaN NaN NaN 110.71 1 106.48 105.98 106.98 -4.2289 0 0 0 0.2396 1 21307 21307 0.30703 0.30703 1 + 34074 20300 22932 22947 33542 33542 -0.07645077931829292 PMIFVQEL 8 Unmodified _PMIFVQEL_ 0 0 0 REV__ENST00000419967.5_1_19:54635002-54635089:+|nuORF REV__ENST00000419967.5_1_19:54635002-54635089:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 488.7806396484375 2 488.762246 975.50994 NaN NaN NaN NaN NaN NaN NaN 150.5 1 145.3 144.8 145.8 -5.1994 0 0 0 0.2343 1 29167 29167 0.12286 0 1 + 34075 21498 22933 22948 33543 33543 0.021204973109320235 PMKHSKYR 8 Unmodified _PMKHSKYR_ 0 0 0 KBTBD12|p.Y480H|1|0.18|ENSG00000187715|chr3:127930229-127930229|T/C|missense_variant KBTBD12|p.Y480H|1|0.18|ENSG00000187715|chr3:127930229-127930229|T/C|missense_variant KBTBD12|p.Y480H|1|0.18|ENSG00000187715|chr3:127930229-127930229|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 349.833984375 3 349.523649 1045.54912 -1.0266 -0.00035881 -0.32865 -0.00011487 -1.3552 -0.00047368 349.5235011570409 23.933 0.76031 22.144 21.876 22.637 -1.7886 57 21 4 0 0 0 0.83271 1 3825 3825 1.8442 0 1 7092300 34076 11976 22934 22949 33544 33544 0.02816642385164414 PMMLLLKP 8 Unmodified _PMMLLLKP_ 0 0 0 REV__ENST00000435454.5_3_3:15001059-15001134:+|nuORF REV__ENST00000435454.5_3_3:15001059-15001134:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 471.7793884277344 2 471.779385 941.544217 NaN NaN NaN NaN NaN NaN NaN 8.7452 1 8.7452 8.2452 9.2452 0 0 0 0 0.21486 1 945 945 0 0 1 + 34077 21659 22935 22950 33545 33545 0.07110622198183592 PMMWSMAC 8 Unmodified _PMMWSMAC_ 0 0 0 REV__ENST00000355703.3_1_11:65402051-65403000:+|nuORF REV__ENST00000355703.3_1_11:65402051-65403000:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.4544677734375 3 319.45475 955.342422 NaN NaN NaN NaN NaN NaN NaN 47.268 1 47.268 46.768 47.768 0 0 0 0 0.21486 1 8910 8910 0.45834 0 1 + 34078 20797 22936 22951 33546 33546 -0.13703552821345966 PMPLPPFY 8 Unmodified _PMPLPPFY_ 0 0 0 ENST00000461735.1_2_7:150773431-150773557:+|nuORF ENST00000461735.1_2_7:150773431-150773557:+|nuORF ENST00000461735.1_2_7:150773431-150773557:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2403869628906 2 481.246232 960.477911 0.26442 0.00012725 -0.63216 -0.00030423 -0.36774 -0.00017697 481.24580816094124 35.169 0.54945 32.893 32.591 33.141 -2.2766 32 15 3 0 0 0 8448 1 6125 6125 0.62683 0 1 2390600 34079 10075 22937 22952 33547 33547 -0.003908703722231621 PMPPESEPP 9 Unmodified _PMPPESEPP_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2607421875 2 490.723318 979.432083 0.084816 4.1621E-05 0.59093 0.00028998 0.67574 0.0003316 490.7235658818625 114.85 0.68916 110.38 110.26 110.94 -4.4726 29 19 3 0 0 0 0.72864 1 22611 22611 23.148 6.2061 1 3409100 + 34080 19258 22938 22953 33548 33548 -0.05845560345119338 PMPPESEPP 9 Unmodified _PMPPESEPP_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2570495605469 2 490.723318 979.432083 0.28623 0.00014046 0.3026 0.00014849 0.58883 0.00028895 490.72334804030146 115.05 0.53069 110.49 110.44 110.97 -4.555 19 14 2 0 0 0 0.72864 1 22079 22079 23.148 6.2061 1 1772800 + 34081 19258 22938 22953 33549 33549 -0.05845560345119338 PMPPESEPP 9 Unmodified _PMPPESEPP_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27252197265625 2 490.723318 979.432083 0.29276 0.00014366 0.55527 0.00027248 0.84803 0.00041615 490.72345536454867 114.7 0.66904 110.39 110.31 110.98 -4.3136 28 18 2 0 0 0 0.72864 1 22107 22107 23.148 6.2061 1 3223000 + 34082 19258 22938 22953 33550 33550 -0.05845560345119338 PMPPESEPP 9 Unmodified _PMPPESEPP_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 490.723318 979.432083 0.23934 0.00011745 0.36767 0.00018042 0.60701 0.00029787 490.72343384373835 110.23 0.48583 110.23 110.16 110.64 0 -0.14253 -8.9204E-05 NaN 23.148 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2440100 + 34083 19258 22938 22953 -0.05845560345119338 PMQLHRAC 8 Unmodified _PMQLHRAC_ 0 0 0 ENST00000439794.6_1_17:20861676-20884829:+|nuORF ENST00000439794.6_1_17:20861676-20884829:+|nuORF ENST00000439794.6_1_17:20861676-20884829:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.1751708984375 3 319.158202 954.452776 NaN NaN NaN NaN NaN NaN NaN 38.801 1 36.359 35.859 36.859 -2.4419 0 0 0 0.21486 1 6916 6916 0.45834 0 1 34084 9876 22939 22954 33551 33551 -0.02627248446435715 PMRRSIKK 8 Unmodified _PMRRSIKK_ 0 0 0 tr|U7SVU6|U7SVU6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01344PE=4SV=1 tr|U7SVU6|U7SVU6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01344PE=4SV=1 tr|U7SVU6|U7SVU6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01344PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.2123718261719 3 339.211294 1014.61205 NaN NaN NaN NaN NaN NaN NaN 179.09 1 174.3 173.8 174.8 -4.7898 0 0 0 0.21486 1 36643 36643 0.45834 0 1 34085 26241 22940 22955 33552 33552 0.10533208173205821 PMSLETRQ 8 Unmodified _PMSLETRQ_ 0 0 0 REV__nc|ENSG00000170653|P17544-4|ATF7 REV__nc|ENSG00000170653|P17544-4|ATF7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24102783203125 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 123.2 1 118.61 118.11 119.11 -4.5926 0 0 0 0.23366 1 23717 23717 0.063987 0 1 + 34086 18174 22941 22956 33553 33553 -0.011950493596486922 PMSTYPMGY 9 Unmodified _PMSTYPMGY_ 0 0 0 REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6996459960938 2 523.719721 1045.42489 NaN NaN NaN NaN NaN NaN NaN 112.94 1 108.67 108.17 109.17 -4.2725 0 0 0 0.23508 1 21748 21748 8.5933 0 1 + 34087 17100 22942 22957 33554 33554 -0.09600616217176139 PMTRGVSKL 9 Unmodified _PMTRGVSKL_ 0 0 0 ENST00000367627.7_1_1:179050520-179050766:+|nuORF ENST00000367627.7_1_1:179050520-179050766:+|nuORF ENST00000367627.7_1_1:179050520-179050766:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.0084533691406 3 330.191788 987.553536 NaN NaN NaN NaN NaN NaN NaN 134.35 1 134.35 133.85 134.85 0 0 0 0 0.23508 1 26594 26594 1.1933 0 1 34088 9079 22943 22958 33555 33555 0.059261068080672885 PMVLHGSLV 9 Unmodified _PMVLHGSLV_ 0 0 0 nc|ENSG00000142515|P07288-2|KLK3 nc|ENSG00000142515|P07288-2|KLK3 nc|ENSG00000142515|P07288-2|KLK3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.17938232421875 3 318.181001 951.521173 NaN NaN NaN NaN NaN NaN NaN 119.12 1 114.47 113.97 114.97 -4.645 0 0 0 0.23508 1 22857 22857 2.7352 0 1 34089 12361 22944 22959 33556 33556 0.04347319405064809 PNALLLYQL 9 Unmodified _PNALLLYQL_ 0 0 0 REV__ENST00000395611.7_3_10:49643604-49643799:+|nuORF REV__ENST00000395611.7_3_10:49643604-49643799:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26513671875 2 522.808042 1043.60153 -0.047669 -2.4922E-05 1.9852 0.0010379 1.9376 0.001013 522.80909829223 93.633 0.60741 93.633 93.398 94.005 0 23 16 2 0 0 0 0.51974 1 18402 18402 1.2148 0.80657 1 1312700 + 34090 21264 22945 22960 33557 33557 0.08147503999748551 PNALLLYQL 9 Unmodified _PNALLLYQL_ 0 0 0 REV__ENST00000395611.7_3_10:49643604-49643799:+|nuORF REV__ENST00000395611.7_3_10:49643604-49643799:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.808042 1043.60153 -0.16516 -8.6348E-05 0.34122 0.00017839 0.17606 9.2046E-05 523.3098368782397 97.561 0.2136 93.464 93.359 93.572 -4.0978 -0.084507 -0.0010504 NaN 1.2148 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 833170 + 34091 21264 22945 22960 0.08147503999748551 PNCTGQVLWGK 11 Unmodified _PNCTGQVLWGK_ 0 0 0 ENST00000462733.5_1_17:17919106-17919331:-|nuORF ENST00000462733.5_1_17:17919106-17919331:-|nuORF ENST00000462733.5_1_17:17919106-17919331:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2899169921875 2 601.802965 1201.59138 0.35629 0.00021441 1.0291 0.0006193 1.3854 0.00083371 601.8035132823658 14.876 0.14175 13.762 13.711 13.852 -1.1142 5 3 2 0 0 0 0.96183 1 2257 2257 2.7352 0.64919 1 356120 34092 10089 22946 22961 33558 33558 -0.001354269971670874 PNEATGPP 8 Unmodified _PNEATGPP_ 0 0 0 REV__ENSG00000166188|ENST00000299237|ZNF319 REV__ENSG00000166188|ENST00000299237|ZNF319 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 784.3511352539062 1 782.367909 781.360633 0.27045 0.00021159 0.084114 6.5808E-05 0.35456 0.0002774 782.3678590765068 50.117 1.5443 47.118 46.447 47.991 -2.999 105 44 3 0 0 0 0.68128 1 9221 9221 16.942 0 1 10812000 + 34093 17831 22947 22962 33559 33559 -0.03879311987464007 PNEATGPP 8 Unmodified _PNEATGPP_ 0 0 0 REV__ENSG00000166188|ENST00000299237|ZNF319 REV__ENSG00000166188|ENST00000299237|ZNF319 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 782.367909 781.360633 0.82186 0.00064299 -0.42214 -0.00033027 0.39972 0.00031273 782.367451692912 46.894 1.3313 46.894 46.28 47.612 0 -0.17054 -0.0003237 NaN 16.942 88 37 3 NaN NaN NaN NaN 0 NaN NaN 0 6353900 + 34094 17831 22947 22962 -0.03879311987464007 PNEATGPP 8 Unmodified _PNEATGPP_ 0 0 0 REV__ENSG00000166188|ENST00000299237|ZNF319 REV__ENSG00000166188|ENST00000299237|ZNF319 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 782.367909 781.360633 0.41532 0.00032494 -0.18338 -0.00014347 0.23195 0.00018147 782.3676684271932 49.915 1.5477 47.033 46.38 47.928 -2.8811 -0.031133 -0.00013691 NaN 16.942 102 43 3 NaN NaN NaN NaN 0 NaN NaN 0 12279000 + 34095 17831 22947 22962 -0.03879311987464007 PNEATGPP 8 Unmodified _PNEATGPP_ 0 0 0 REV__ENSG00000166188|ENST00000299237|ZNF319 REV__ENSG00000166188|ENST00000299237|ZNF319 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 782.367909 781.360633 0.27045 0.00021159 0.084114 6.5808E-05 0.35456 0.0002774 782.3678590765068 50.117 1.5443 47.118 46.447 47.991 -2.999 0.05384 7.237E-05 NaN 16.942 105 44 3 NaN NaN NaN NaN 0 NaN NaN 0 10812000 + 34096 17831 22947 22962 -0.03879311987464007 PNEATGPP 8 Unmodified _PNEATGPP_ 0 0 0 REV__ENSG00000166188|ENST00000299237|ZNF319 REV__ENSG00000166188|ENST00000299237|ZNF319 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 782.367909 781.360633 0.1169 9.146E-05 0.27728 0.00021694 0.39418 0.0003084 782.36807009738 50.219 1.5529 47.212 46.38 47.933 -3.0068 0.14783 0.0002235 NaN 16.942 101 44 3 NaN NaN NaN NaN 0 NaN NaN 0 8374000 + 34097 17831 22947 22962 -0.03879311987464007 PNEEPAKPSL 10 Unmodified _PNEEPAKPSL_ 0 0 0 REV__MLT1B_dup948|chr1:201401334-201401734:-|1.062852436806843|0.1940662173317227|2.45|478.0|26|3|anti-sense REV__MLT1B_dup948|chr1:201401334-201401734:-|1.062852436806843|0.1940662173317227|2.45|478.0|26|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2787475585938 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 49.813 1 46.932 46.432 47.432 -2.8811 0 0 0 2.8426 1 9440 9440 0.013265 0 1 + 34098 23860 22948 22963 33560 33560 0.008088313724329055 PNGAAPCR 8 Unmodified _PNGAAPCR_ 0 0 0 REV__nc|ENSG00000160867|P22455-2|FGFR4;REV__nc|ENSG00000068078|P22607-3|FGFR3 REV__nc|ENSG00000160867|P22455-2|FGFR4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 393.18975830078125 2 393.18978 784.365007 NaN NaN NaN NaN NaN NaN NaN 108.08 1 103.95 103.45 104.45 -4.135 0 0 0 0.23782 1 20794 20794 0.12286 0 1 + 34099 24121;14220 22949 22964 33561 33561 -0.035801260455627926 PNGAKSAG 8 Unmodified _PNGAKSAG_ 0 0 0 REV__ENSG00000163064|ENST00000295206|EN1 REV__ENSG00000163064|ENST00000295206|EN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.1822509765625 2 351.182478 700.350402 NaN NaN NaN NaN NaN NaN NaN 32.637 1 30.406 29.906 30.906 -2.2305 0 0 0 0.23664 1 5953 5953 3.2813 0.78282 1 + 34100 17548 22950 22965 33562 33562 -0.01175874922046205 PNGIGLDDA 9 Unmodified _PNGIGLDDA_ 0 0 0 REV__STS|p.D36N|1|0.38|ENSG00000101846|chrX:7253290-7253290|G/A|missense_variant REV__STS|p.D36N|1|0.38|ENSG00000101846|chrX:7253290-7253290|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.227294921875 2 436.211432 870.408311 0.30294 0.00013215 -0.096483 -4.2087E-05 0.20646 9.006E-05 436.21139765912926 30.643 1.0226 28.526 28.011 29.033 -2.1167 62 28 3 0 0 0 0.6231 1 5536 5536 1.2148 0 1 1320500 + 34101 24747 22951 22966 33563 33563 -0.032076577872999223 PNGPVLWF 8 Unmodified _PNGPVLWF_ 0 0 0 ENSG00000125900|ENST00000381623|SIRPD;ENST00000453770.1_1_20:1514156-1534896:-|nuORF ENSG00000125900|ENST00000381623|SIRPD ENSG00000125900|ENST00000381623|SIRPD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2479553222656 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 175.88 1 175.88 175.38 176.38 0 0 0 0 0.21486 1 36434 36434 0.69038 0 1 34102 3402 22952 22967 33564 33564 0.013587210769514968 PNGPVLWF 8 Unmodified _PNGPVLWF_ 0 0 0 ENSG00000125900|ENST00000381623|SIRPD;ENST00000453770.1_1_20:1514156-1534896:-|nuORF ENSG00000125900|ENST00000381623|SIRPD ENSG00000125900|ENST00000381623|SIRPD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2480163574219 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 176.11 1 176.11 175.61 176.61 0 0 0 0 0.21486 1 36483 36483 0.69038 0 1 34103 3402 22952 22967 33565 33565 0.013587210769514968 PNGPVLWF 8 Unmodified _PNGPVLWF_ 0 0 0 ENSG00000125900|ENST00000381623|SIRPD;ENST00000453770.1_1_20:1514156-1534896:-|nuORF ENSG00000125900|ENST00000381623|SIRPD ENSG00000125900|ENST00000381623|SIRPD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24786376953125 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 176.6 1 176.6 176.1 177.1 0 0 0 0 0.21486 1 36584 36584 0.69038 0 1 34104 3402 22952 22967 33566 33566 0.013587210769514968 PNGPVLWF 8 Unmodified _PNGPVLWF_ 0 0 0 ENSG00000125900|ENST00000381623|SIRPD;ENST00000453770.1_1_20:1514156-1534896:-|nuORF ENSG00000125900|ENST00000381623|SIRPD ENSG00000125900|ENST00000381623|SIRPD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24755859375 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 176.83 1 176.83 176.33 177.33 0 0 0 0 0.21486 1 36631 36631 0.69038 0 1 34105 3402 22952 22967 33567 33567 0.013587210769514968 PNGSDRAIV 9 Unmodified _PNGSDRAIV_ 0 0 0 REV__PCDHGA2|p.W531C|1|0.25|ENSG00000081853|chr5:141340564-141340564|G/T|missense_variant REV__PCDHGA2|p.W531C|1|0.25|ENSG00000081853|chr5:141340564-141340564|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16510009765625 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 112.42 1 112.42 111.92 112.92 0 0 0 0 0.19636 1 22117 22117 0.0033805 0.0033805 1 + 34106 14432 22953 22968 33568 33568 0.010754262322734576 PNGSDRAIV 9 Unmodified _PNGSDRAIV_ 0 0 0 REV__PCDHGA2|p.W531C|1|0.25|ENSG00000081853|chr5:141340564-141340564|G/T|missense_variant REV__PCDHGA2|p.W531C|1|0.25|ENSG00000081853|chr5:141340564-141340564|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650390625 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 113.21 1 113.21 112.71 113.71 0 0 0 0 0.19636 1 22259 22259 0.0033805 0 1 + 34107 14432 22953 22968 33569 33569 0.010754262322734576 PNKNCTRVY 9 Unmodified _PNKNCTRVY_ 0 0 0 REV__ENST00000519277.5_1_8:74708911-74722861:-|nuORF REV__ENST00000519277.5_1_8:74708911-74722861:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7736206054688 2 547.774208 1093.53386 0.44545 0.00024401 -0.3839 -0.00021029 0.061552 3.3717E-05 547.7740681267937 38.893 3.1357 38.893 37.363 40.499 0 259 88 4 0 0 0 0.6329 1 6958 6958 10.824 1.4408 1 35776000 + 34108 14916 22954 22969 33570 33570 -0.009162692026848163 PNKNCTRVY 9 Unmodified _PNKNCTRVY_ 0 0 0 REV__ENST00000519277.5_1_8:74708911-74722861:-|nuORF REV__ENST00000519277.5_1_8:74708911-74722861:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7725219726562 2 547.774208 1093.53386 0.013198 7.2296E-06 0.020887 1.1441E-05 0.034085 1.8671E-05 547.774292111321 41.752 3.3031 39.117 37.156 40.459 -2.6348 277 93 5 0 0 0 0.6329 1 7511 7511 10.824 1.4408 1 44108000 + 34109 14916 22954 22969 33571 33571 -0.009162692026848163 PNLAEKAGRW 10 Unmodified _PNLAEKAGRW_ 0 0 0 ENST00000375218.3_1_1:19440021-19440357:-|nuORF ENST00000375218.3_1_1:19440021-19440357:-|nuORF ENST00000375218.3_1_1:19440021-19440357:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.207275390625 3 381.208607 1140.60399 NaN NaN NaN NaN NaN NaN NaN 19.889 1 18.254 17.754 18.754 -1.6351 0 0 0 0.22588 1 3029 3029 3.0723 0.33707 1 34110 9234 22955 22970 33572 33572 0.03931352457425419 PNLRELWLY 9 Unmodified _PNLRELWLY_ 0 0 0 ENSG00000172061|ENST00000347624|LRRC15;nc|ENSG00000172061|Q8TF66-2|LRRC15 ENSG00000172061|ENST00000347624|LRRC15 ENSG00000172061|ENST00000347624|LRRC15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2769165039062 2 602.329673 1202.64479 NaN NaN NaN NaN NaN NaN NaN 86.069 1 82.34 81.84 82.84 -3.7289 0 0 0 0.23508 1 16454 16454 7.2892 0.56607 1 34111 6191 22956 22971 33573 33573 0.05157693777050554 PNLRHYPRKDF 11 Unmodified _PNLRHYPRKDF_ 0 0 0 REV__nc|ENSG00000151208|Q8TDM6-2|DLG5 REV__nc|ENSG00000151208|Q8TDM6-2|DLG5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7739562988281 3 481.593232 1441.75787 NaN NaN NaN NaN NaN NaN NaN 71.148 1 67.899 67.399 68.399 -3.2492 0 0 0 0.23562 1 13850 13850 3.8459 1.0026 1 + 34112 13692 22957 22972 33574 33574 0.05465762222911508 PNLRVAERY 9 Unmodified _PNLRVAERY_ 0 0 0 REV__ENST00000489713.5_1_13:101277731-101290025:-|nuORF REV__ENST00000489713.5_1_13:101277731-101290025:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.1402587890625 3 373.208607 1116.60399 -0.12172 -4.5428E-05 -1.4294 -0.00053346 -1.5511 -0.00057889 373.2080969829228 27.659 0.38015 27.659 27.49 27.87 0 16 10 2 0 0 0 0.8825 1 4860 4860 2.7352 1.9587 1 535450 + 34113 15804 22958 22973 33575 33575 0.050353524574120456 PNLRVAERY 9 Unmodified _PNLRVAERY_ 0 0 0 REV__ENST00000489713.5_1_13:101277731-101290025:-|nuORF REV__ENST00000489713.5_1_13:101277731-101290025:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 373.208607 1116.60399 0.36308 0.00013551 -1.6397 -0.00061196 -1.2766 -0.00047645 373.207909820291 29.554 0.45437 27.598 27.374 27.829 -1.9561 -0.0066279 -9.133E-05 NaN 2.7352 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1070100 + 34114 15804 22958 22973 0.050353524574120456 PNLRVAERY 9 Unmodified _PNLRVAERY_ 0 0 0 REV__ENST00000489713.5_1_13:101277731-101290025:-|nuORF REV__ENST00000489713.5_1_13:101277731-101290025:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 373.208607 1116.60399 0.34704 0.00012952 -1.7192 -0.00064164 -1.3722 -0.00051212 373.54221499445663 29.494 0.45361 27.601 27.332 27.785 -1.8928 -0.0037815 -0.00018036 NaN 2.7352 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1014700 + 34115 15804 22958 22973 0.050353524574120456 PNLRVAERY 9 Unmodified _PNLRVAERY_ 0 0 0 REV__ENST00000489713.5_1_13:101277731-101290025:-|nuORF REV__ENST00000489713.5_1_13:101277731-101290025:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 373.208607 1116.60399 -0.18617 -6.9482E-05 -1.419 -0.0005296 -1.6052 -0.00059908 373.2080703383538 29.636 0.45029 27.562 27.309 27.76 -2.0743 -0.043377 0.00015575 NaN 2.7352 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 873790 + 34116 15804 22958 22973 0.050353524574120456 PNLSDKSL 8 Unmodified _PNLSDKSL_ 0 0 0 REV__AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant REV__AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2218017578125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 141.06 1 136.07 135.57 136.57 -4.9877 0 0 0 0.21486 1 27159 27159 5.2307 0 1 + 34117 12989 22959 22974 33576 33576 0.019015056264720442 PNLSLEDVA 9 Unmodified _PNLSLEDVA_ 0 0 0 REV__ENSG00000159399|ENST00000290573|HK2 REV__ENSG00000159399|ENST00000290573|HK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73895263671875 2 479.248015 956.481476 -0.08196 -3.9279E-05 1.2609 0.00060427 1.1789 0.00056499 479.2485766731009 43.209 0.78643 40.49 40.196 40.982 -2.7191 40 21 2 0 0 0 0.31673 1 8061 8061 32.786 3.7041 1 5346600 + 34118 17370 22960 22975 33577 33577 0.001494709353437429 PNMAERETE 9 Unmodified _PNMAERETE_ 0 0 0 ENST00000560388.1_1_15:56927391-56935206:-|nuORF;nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D ENST00000560388.1_1_15:56927391-56935206:-|nuORF ENST00000560388.1_1_15:56927391-56935206:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2107238769531 3 359.494084 1075.46042 -0.50506 -0.00018157 0.46406 0.00016683 -0.040997 -1.4738E-05 359.4942345316364 27.415 0.67286 25.493 25.329 26.002 -1.9222 45 18 3 0 0 0 0.73814 1 4594 4594 4.5289 0 1 17188000 34119 4123 22961 22976 33578 33578 -0.07428862435813244 PNNGKNFF 8 Unmodified _PNNGKNFF_ 0 0 0 ENSG00000109674|ENST00000264596|NEIL3 ENSG00000109674|ENST00000264596|NEIL3 ENSG00000109674|ENST00000264596|NEIL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.164794921875 3 313.155732 936.445365 NaN NaN NaN NaN NaN NaN NaN 71.559 1 68.092 67.592 68.592 -3.467 0 0 0 0.21486 1 13563 13563 3.9444 0.94915 1 34120 2536 22962 22977 33579 33579 -0.025399414508569862 PNPARIALR 9 Unmodified _PNPARIALR_ 0 0 0 HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|12|2|sense HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|12|2|sense HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|12|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.2008056640625 3 336.541809 1006.6036 -0.62383 -0.00020995 1.0313 0.00034706 0.40743 0.00013712 336.54199965594336 57.599 1.0175 54.393 53.973 54.99 -3.2052 65 28 3 0 0 0 0.10537 1 10759 10759 29.082 1.9932 1 1583600 34121 11901 22963 22978 33580 33580 0.10055977528213589 PNPEEQLIF 9 Unmodified _PNPEEQLIF_ 0 0 0 REV__PLEKHA7|p.F802Sfs*21|2|0.18|ENSG00000166689|chr11:16800978-16800978|A/-|frameshift_variant REV__PLEKHA7|p.F802Sfs*21|2|0.18|ENSG00000166689|chr11:16800978-16800978|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7794189453125 2 543.776939 1085.53933 0.2582 0.0001404 0.15402 8.3755E-05 0.41222 0.00022416 543.7773433656185 140.03 0.7632 135.39 134.86 135.62 -4.6439 29 21 2 0 0 0 0.31728 1 27566 27566 0.37959 0 1 2265600 + 34122 17865 22964 22979 33581 33581 -2.2671392343909247E-05 PNPEEQLIF 9 Unmodified _PNPEEQLIF_ 0 0 0 REV__PLEKHA7|p.F802Sfs*21|2|0.18|ENSG00000166689|chr11:16800978-16800978|A/-|frameshift_variant REV__PLEKHA7|p.F802Sfs*21|2|0.18|ENSG00000166689|chr11:16800978-16800978|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7765502929688 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 140.15 1 135.3 134.8 135.8 -4.8492 0 0 0 0.19162 1 27024 27024 0.37959 0.25177 1 + 34123 17865 22964 22979 33582 33582 -2.2671392343909247E-05 PNQIHLIQDTA 11 Unmodified _PNQIHLIQDTA_ 0 0 0 REV__ENST00000418303.1_1_7:43958366-43959461:+|nuORF REV__ENST00000418303.1_1_7:43958366-43959461:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 417.2236022949219 3 417.222693 1248.64625 NaN NaN NaN NaN NaN NaN NaN 71.393 1 67.926 67.426 68.426 -3.467 0 0 0 0.2367 1 13532 13532 2.6312 1.5215 1 + 34124 21482 22965 22980 33583 33583 0.031872830751581205 PNQLLGHK 8 Unmodified _PNQLLGHK_ 0 0 0 REV__nc|ENSG00000012048|P38398-8|BRCA1 REV__nc|ENSG00000012048|P38398-8|BRCA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7615661621094 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 144.75 1 144.75 144.25 145.25 0 0 0 0 0.23487 1 28925 28925 0.62683 0.37535 1 + 34125 13940 22966 22981 33584 33584 0.05176624337184421 PNQSVPET 8 Unmodified _PNQSVPET_ 0 0 0 ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22760009765625 2 436.211432 870.408311 0.30294 0.00013215 -0.096483 -4.2087E-05 0.20646 9.006E-05 436.21139765912926 30.643 1.0226 28.526 28.011 29.033 -2.1167 62 28 3 0 0 0 8448 1 5581 5581 1.3295 0 1 1320500 34126 6291 22967 22982 33585 33585 -0.03207657787288554 PNRDERIEERK 11 Unmodified _PNRDERIEERK_ 0 0 0 REV__ZC3H13|p.A1112Vfs*54|1|0.23|ENSG00000123200|chr13:45969209-45969209|G/-|frameshift_variant;REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24407958984375 3 481.255056 1440.74334 NaN NaN NaN NaN NaN NaN NaN 86.716 1 82.765 82.265 83.265 -3.9503 0 0 0 0.22632 1 16508 16508 1.4551 1.4289 1 + 34127 25555;15722 22968 22983 33586 33586 0.040596452841327846 PNRFQPELS 9 Unmodified _PNRFQPELS_ 0 0 0 ENSG00000170175|ENST00000306071|CHRNB1;nc|ENSG00000170175|P11230-2|CHRNB1;CHRNB1|p.A413V|1|0.18|ENSG00000170175|chr17:7455814-7455814|C/T|missense_variant ENSG00000170175|ENST00000306071|CHRNB1 ENSG00000170175|ENST00000306071|CHRNB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.76953125 2 544.28018 1086.54581 0.015627 8.5053E-06 -0.18086 -9.8437E-05 -0.16523 -8.9931E-05 544.2801388913849 46.903 0.55266 43.961 43.616 44.168 -2.9421 34 15 3 0 0 0 0.73268 1 8544 8544 18.146 0 1 2535000 34128 6045 22969 22984 33587 33587 0.005996708121301708 PNRKMKRRRKL 11 Unmodified _PNRKMKRRRKL_ 0 0 0 PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3878173828125 2 741.967345 1481.92014 NaN NaN NaN NaN NaN NaN NaN 153.49 1 148.72 148.22 149.22 -4.7684 0 0 0 0.23698 1 30504 30504 1.1933 0.12188 1 34129 12818 22970 22985 33588 33588 0.1984544742408616 PNRMYWQQG 9 Unmodified _PNRMYWQQG_ 0 0 0 LRRK2|p.R1735Q|1|0.17|ENSG00000188906|chr12:40322068-40322068|G/A|missense_variant LRRK2|p.R1735Q|1|0.17|ENSG00000188906|chr12:40322068-40322068|G/A|missense_variant LRRK2|p.R1735Q|1|0.17|ENSG00000188906|chr12:40322068-40322068|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.272705078125 2 590.271832 1178.52911 NaN NaN NaN NaN NaN NaN NaN 163.88 1 159.09 158.59 159.59 -4.7898 0 0 0 0.23508 1 32703 32703 4.3292 0 1 34130 12093 22971 22986 33589 33589 -0.0530115334547645 PNTQSLSQTGM 11 Oxidation (M) _PNTQSLSQTGM(Oxidation (M))_ PNTQSLSQTGM(1) PNTQSLSQTGM(40) 0 0 1 nc|ENSG00000214826|Q92771|DDX12P nc|ENSG00000214826|Q92771|DDX12P nc|ENSG00000214826|Q92771|DDX12P MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2684936523438 2 590.269152 1178.52375 NaN NaN NaN NaN NaN NaN NaN 85.46 1 81.796 81.296 82.296 -3.6641 0 0 0 0.071864 1 16707 16707 40.239 8.9709 1 34131 12595 22972 22987 33590 33590 116 -0.05836921718605481 PNTVWAQI 8 Unmodified _PNTVWAQI_ 0 0 0 REV__nc|ENSG00000142733|O95382-2|MAP3K6 REV__nc|ENSG00000142733|O95382-2|MAP3K6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2503967285156 2 464.747985 927.481417 -0.21179 -9.843E-05 -2.4009 -0.0011158 -2.6127 -0.0012143 464.7458357699406 42.29 0.90665 39.571 38.933 39.84 -2.7191 54 25 3 0 0 0 8448 1 7826 7826 6.2058 1.3088 1 5552700 + 34132 16686 22973 22988 33591 33591 0.01477515725991907 PNWYVKYR 8 Unmodified _PNWYVKYR_ 0 0 0 REV__MSTN|p.K153Ffs*44|1|0.05|ENSG00000138379|chr2:190060352-190060353|-/GAAA|frameshift_variant REV__MSTN|p.K153Ffs*44|1|0.05|ENSG00000138379|chr2:190060352-190060353|-/GAAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.8282470703125 3 375.866181 1124.57671 NaN NaN NaN NaN NaN NaN NaN 19.821 1 18.424 17.924 18.924 -1.3966 0 0 0 0.21486 1 3284 3284 3.5965 0.8613 1 + 34133 23883 22974 22989 33592 33592 0.019408689170404614 PNYDNLIKT 9 Unmodified _PNYDNLIKT_ 0 0 0 tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1 tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1 tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2138977050781 3 359.857351 1076.55022 0.74356 0.00026758 -1.4722 -0.00052978 -0.72863 -0.0002622 359.85700057056357 27.072 0.54761 25.29 24.76 25.308 -1.7821 20 15 2 0 0 0 0.77797 1 4781 4781 2.7352 0 1 1212200 34134 25913 22975 22990 33593 33593 0.01501135235048423 PPAAAARRWR 10 Unmodified _PPAAAARRWR_ 0 0 0 ENST00000396901.5_2_19:36389387-36389702:-|nuORF ENST00000396901.5_2_19:36389387-36389702:-|nuORF ENST00000396901.5_2_19:36389387-36389702:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3167114257812 2 576.330873 1150.64719 NaN NaN NaN NaN NaN NaN NaN 141.29 1 141.29 140.79 141.79 0 0 0 0 2.8426 1 28143 28143 0.20733 0 1 34135 9453 22976 22991 33594 33594 0.07789587025354194 PPAAAARRWR 10 Unmodified _PPAAAARRWR_ 0 0 0 ENST00000396901.5_2_19:36389387-36389702:-|nuORF ENST00000396901.5_2_19:36389387-36389702:-|nuORF ENST00000396901.5_2_19:36389387-36389702:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3167114257812 2 576.330873 1150.64719 NaN NaN NaN NaN NaN NaN NaN 141.3 1 141.3 140.8 141.8 0 0 0 0 0.22569 1 28146 28146 15.847 5.0233 1 34136 9453 22976 22991 33595 33595 0.07789587025354194 PPAAAARRWR 10 Unmodified _PPAAAARRWR_ 0 0 0 ENST00000396901.5_2_19:36389387-36389702:-|nuORF ENST00000396901.5_2_19:36389387-36389702:-|nuORF ENST00000396901.5_2_19:36389387-36389702:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3355712890625 2 576.330873 1150.64719 NaN NaN NaN NaN NaN NaN NaN 146.51 1 146.51 146.01 147.01 0 0 0 0 0.22588 1 29297 29297 10.824 0.67336 1 34137 9453 22976 22991 33596 33596 0.07789587025354194 PPACDPCPE 9 Unmodified _PPACDPCPE_ 0 0 0 ZNF837|p.V144A|1|0.47|ENSG00000152475|chr19:58368902-58368902|A/G|missense_variant ZNF837|p.V144A|1|0.47|ENSG00000152475|chr19:58368902-58368902|A/G|missense_variant ZNF837|p.V144A|1|0.47|ENSG00000152475|chr19:58368902-58368902|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.169921875 3 310.122823 927.346639 NaN NaN NaN NaN NaN NaN NaN 31.838 1 31.838 31.338 32.338 0 0 0 0 0.23508 1 5763 5763 1.1933 0 1 34138 26637 22977 22992 33597 33597 -0.11994048802432644 PPAGYCLSTLE 11 Unmodified _PPAGYCLSTLE_ 0 0 0 REV__ENSG00000161996|ENST00000293879|WDR90 REV__ENSG00000161996|ENST00000293879|WDR90 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3118286132812 2 575.776082 1149.53761 0.29248 0.00016841 3.1908 0.0018372 3.4833 0.0020056 575.7769500686665 133.02 0.13695 133.02 132.93 133.07 0 5 3 2 0 0 0 0.78434 1 26303 26303 5.7319 0.50118 1 1200200 + 34139 17477 22978 22993 33598 33598 -0.031176442195146592 PPAHCRCQYQ 10 Unmodified _PPAHCRCQYQ_ 0 0 0 nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2950439453125 2 601.763317 1201.51208 0.3921 0.00023595 1.5595 0.00093845 1.9516 0.0011744 602.264000555466 141.19 0.16837 141.19 141.06 141.23 0 5 4 2 0 0 0 0.53005 1 28131 28131 0.013265 0.0073095 1 2215200 34140 12543 22979 22994 33599 33599 -0.08061397222900268 PPAIDRRVVE 10 Unmodified _PPAIDRRVVE_ 0 0 0 ENSG00000128011|ENST00000248668|LRFN1 ENSG00000128011|ENST00000248668|LRFN1 ENSG00000128011|ENST00000248668|LRFN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3139038085938 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 142.03 1 142.03 141.53 142.53 0 0 0 0 0.22588 1 28313 28313 10.074 2.7847 1 34141 3503 22980 22995 33600 33600 0.0765590814596635 PPALGPPA 8 Unmodified _PPALGPPA_ 0 0 0 ENST00000327492.3_1_22:41842567-41842714:-|nuORF;ENSG00000228672|ENST00000434752|PROB1 ENST00000327492.3_1_22:41842567-41842714:-|nuORF ENST00000327492.3_1_22:41842567-41842714:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2067565917969 2 360.207964 718.401375 NaN NaN NaN NaN NaN NaN NaN 109.89 1 105.7 105.2 106.2 -4.1826 0 0 0 0.2396 1 21146 21146 0.30703 0 1 34142 7800 22981 22996 33601 33601 0.030910741227899052 PPAPAAKG 8 Unmodified _PPAPAAKG_ 0 0 0 ENSG00000205639|ENST00000338315|MFSD2B ENSG00000205639|ENST00000338315|MFSD2B ENSG00000205639|ENST00000338315|MFSD2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 354.487548828125 2 354.705589 707.396624 NaN NaN NaN NaN NaN NaN NaN 78.371 1 78.371 77.871 78.871 0 0 0 0 0.2396 1 15252 15252 0.12286 0 1 34143 7653 22982 22997 33602 33602 0.031221899800470965 PPAPACGL 8 Unmodified _PPAPACGL_ 0 0 0 REV__ENST00000266269.9_2_22:31741867-31742074:-|nuORF REV__ENST00000266269.9_2_22:31741867-31742074:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.1864318847656 2 363.186174 724.357796 NaN NaN NaN NaN NaN NaN NaN 44.931 1 42.141 41.641 42.641 -2.79 0 0 0 0.2396 1 8455 8455 0.0082765 0 1 + 34144 20250 22983 22998 33603 33603 -0.015408586459784601 PPAPASVP 8 Unmodified _PPAPASVP_ 0 0 0 REV__ENSG00000173442|ENST00000309295|EHBP1L1 REV__ENSG00000173442|ENST00000309295|EHBP1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 368.1746520996094 2 368.205421 734.39629 NaN NaN NaN NaN NaN NaN NaN 117.83 1 117.83 117.33 118.33 0 0 0 0 0.23312 1 23212 23212 6.2058 0 1 + 34145 18355 22984 22999 33604 33604 0.01846770260192443 PPAPPPPPP 9 Unmodified _PPAPPPPPP_ 0 0 0 ENST00000302913.8_1_7:100488489-100488690:-|nuORF;LMTK3|p.E877Rfs*27|1|0.19|ENSG00000142235|chr19:48498440-48498440|C/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;ENSG00000197483|ENST00000598519|ZNF628;ENSG00000142235|ENST00000600059|LMTK3;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;ZNF628|p.Q661Sfs*63|1|0.35|ENSG00000197483|chr19:55483170-55483170|C/-|frameshift_variant;FHDC1|p.W102Gfs*55|1|0.17|ENSG00000137460|chr4:152943355-152943355|T/-|frameshift_variant;nc|ENSG00000103495|P56270-2|MAZ;ENST00000413725.5_1_11:64533292-64535069:-|nuORF;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;FHDC1|p.T439Pfs*2|1|0.28|ENSG00000137460|chr4:152972467-152972467|A/-|frameshift_variant;nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;ENSG00000158195|ENST00000618852|WASF2;RB1|p.V654Cfs*4|1|0.33|ENSG00000139687|chr13:48456343-48456343|A/-|frameshift_variant;FHDC1|p.A494Gfs*8|1|0.28|ENSG00000137460|chr4:152974766-152974767|-/G|frameshift_variant;RB1|p.Y529*|1|0.23|ENSG00000139687|chr13:48381334-48381335|AC/-|frameshift_variant;RB1|p.Y529Tfs*3|1|0.08|ENSG00000139687|chr13:48381329-48381329|T/-|frameshift_variant;RB1|p.L561Mfs*9|1|0.07|ENSG00000139687|chr13:48381428-48381432|CCTTG/-|frameshift_variant;nc|ENSG00000168066|Q15637-7|SF1;ENSG00000168066|ENST00000377390|SF1;ENSG00000105429|ENST00000251268|MEGF8;ENSG00000167771|ENST00000301459|RCOR2;ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant;BOD1L1|p.K236Nfs*65|1|0.29|ENSG00000038219|chr4:13614662-13614662|T/-|frameshift_variant;BOD1L1|p.N316Kfs*2|1|0.48|ENSG00000038219|chr4:13614422-13614423|-/T|frameshift_variant;BOD1L1|p.V570*|4|0.23|ENSG00000038219|chr4:13608565-13608565|T/-|frameshift_variant;BOD1L1|p.V667Gfs*6|1|0.06|ENSG00000038219|chr4:13604900-13604901|-/C|frameshift_variant;ENSG00000137460|ENST00000511601|FHDC1;FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant;nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;TACC2|p.E1974Rfs*22|1|0.37|ENSG00000138162|chr10:122195118-122195119|-/C|frameshift_variant;TACC2|p.V2229Cfs*22|1|0.07|ENSG00000138162|chr10:122211108-122211109|-/A|frameshift_variant;nc|ENSG00000184937|P19544-2|WT1;nc|ENSG00000184937|P19544-3|WT1;nc|ENSG00000184937|P19544-4|WT1;nc|ENSG00000184937|P19544|WT1;nc|ENSG00000184937|P19544-8|WT1;ENSG00000184937|ENST00000452863|WT1 REV__QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant;REV__ENSG00000155657|ENST00000589042|TTN;ENSG00000167771|ENST00000301459|RCOR2;REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;ENSG00000038219|ENST00000040738|BOD1L1;ENSG00000137460|ENST00000511601|FHDC1;nc|ENSG00000138162|O95359-3|TACC2;nc|ENSG00000184937|P19544-2|WT1;REV__ENSG00000099822|ENST00000251287|HCN2;REV__ENSG00000112320|ENST00000317357|SOBP;REV__SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant;REV__nc|ENSG00000154380|Q8N8S7-3|ENAH REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 433.8858947753906 2 433.742171 865.469789 NaN NaN NaN NaN NaN NaN NaN 51.837 1 51.837 51.337 52.337 0 0 0 0 0.16659 1 9845 9845 28.173 0 1 34146 17221;13202;1180;14147;5848;4084;4158;15856;17179;6945;14644;15293 22985 23000 33605 33605 0.031673187026513006 PPASEDLEV 9 Unmodified _PPASEDLEV_ 0 0 0 SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.G1860Efs*9|1|0.33|ENSG00000065526|chr1:15931816-15931816|G/-|frameshift_variant;SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant;ENSG00000065526|ENST00000375759|SPEN SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7312316894531 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 138.92 1 138.92 138.42 139.42 0 0 0 0 0.19657 1 27598 27598 4.897 4.6455 1 34147 25781 22986 23001 33606 33606 -0.02966521818621004 PPASGVCP 8 Unmodified _PPASGVCP_ 0 0 0 PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 364.1508483886719 2 364.175807 726.337061 NaN NaN NaN NaN NaN NaN NaN 107.87 1 107.87 107.37 108.37 0 0 0 0 0.23899 1 21211 21211 1.3295 0 1 34148 12794 22987 23002 33607 33607 -0.037054490256537065 PPCGGGGG 8 Unmodified _PPCGGGGG_ 0 0 0 REV__ENST00000416675.5_1_7:100450451-100456466:+|nuORF REV__ENST00000416675.5_1_7:100450451-100456466:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3003540039062 1 601.239872 600.232595 0.44305 0.00026638 -4.3687 -0.0026267 -3.9257 -0.0023603 601.2339978998542 151.97 0.1387 146.8 146.73 146.87 -5.1759 5 3 2 0 0 0 0.88047 3 29439 29439;29460;29466 0.79363 0.79363 1 1001400 + 34149 21472 22988 23003 33608;33609;33610 33608 -0.0835115078234594 PPCHRVTA 8 Unmodified _PPCHRVTA_ 0 0 0 ENST00000539506.5_1_12:132269555-132269855:+|nuORF ENST00000539506.5_1_12:132269555-132269855:+|nuORF ENST00000539506.5_1_12:132269555-132269855:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 440.2506103515625 2 440.726529 879.438506 0.23012 0.00010142 -1.6049 -0.00070732 -1.3748 -0.0006059 440.72581935711844 36.564 0.35594 36.564 36.387 36.743 0 17 9 2 0 0 0 0.99494 1 6759 6759 4.756 0 1 1694900 34150 11056 22989 23004 33611 33611 -0.006035776030898887 PPDHAERAEE 10 Unmodified _PPDHAERAEE_ 0 0 0 ENSG00000173918|ENST00000579760|C1QTNF1;nc|ENSG00000173918|Q9BXJ1-2|C1QTNF1 ENSG00000173918|ENST00000579760|C1QTNF1 ENSG00000173918|ENST00000579760|C1QTNF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.339111328125 2 575.759809 1149.50507 0.29534 0.00017004 -1.581 -0.00091028 -1.2857 -0.00074023 576.2600533419542 119.41 0.60508 114.89 114.51 115.12 -4.5221 24 16 2 0 0 0 0.86261 1 23564 23564 6.7232 0 1 6490800 34151 6317 22990 23005 33612 33612 -0.0637071529813511 PPDHRKFQGY 10 Unmodified _PPDHRKFQGY_ 0 0 0 ENSG00000131446|ENST00000307826|MGAT1 ENSG00000131446|ENST00000307826|MGAT1 ENSG00000131446|ENST00000307826|MGAT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.781494140625 2 622.812179 1243.60981 NaN NaN NaN NaN NaN NaN NaN 110.88 1 110.88 110.38 111.38 0 0 0 0 0.22588 1 21809 21809 6.7232 2.1943 1 34152 3676 22991 23006 33613 33613 -0.002255490309153174 PPDIMSVLG 9 Unmodified _PPDIMSVLG_ 0 0 0 REV__ENSG00000105675|ENST00000262623|ATP4A REV__ENSG00000105675|ENST00000262623|ATP4A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649169921875 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 59.488 1 56.264 55.764 56.764 -3.2237 0 0 0 0.19661 1 11112 11112 0.029283 0 1 + 34153 15009 22992 23007 33614 33614 0.006916204142157767 PPDLARHDVIK 11 Unmodified _PPDLARHDVIK_ 0 0 0 nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant nc|ENSG00000103932|Q9BWH6-2|RPAP1 nc|ENSG00000103932|Q9BWH6-2|RPAP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7738647460938 2 630.856586 1259.69862 NaN NaN NaN NaN NaN NaN NaN 116.66 1 112.3 111.8 112.8 -4.3585 0 0 0 0.23264 1 22457 22457 6.2058 0.47393 1 34154 2210 22993 23008 33615 33615 0.07915866208736588 PPDPMRGPL 9 Unmodified _PPDPMRGPL_ 0 0 0 REV__ENST00000420022.3_1_19:50193401-50193710:+|nuORF REV__ENST00000420022.3_1_19:50193401-50193710:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2607421875 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 114.74 1 110.27 109.77 110.77 -4.4726 0 0 0 0.21408 1 22611 22611 19.439 5.5329 1 + 34155 21499 22994 23009 33616 33616 0.005578448826440763 PPDPQVIY 8 Unmodified _PPDPQVIY_ 0 0 0 REV__ENSG00000113494|ENST00000618457|PRLR REV__ENSG00000113494|ENST00000618457|PRLR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1645812988281 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 83.212 1 83.212 82.712 83.712 0 0 0 0 0.23584 1 16224 16224 0.25148 0 1 + 34156 15345 22995 23010 33617 33617 0.00354693631857117 PPDPQVIY 8 Unmodified _PPDPQVIY_ 0 0 0 REV__ENSG00000113494|ENST00000618457|PRLR REV__ENSG00000113494|ENST00000618457|PRLR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1645812988281 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 83.226 1 83.226 82.726 83.726 0 0 0 0 0.21486 1 16227 16227 3.9444 0.3479 1 + 34157 15345 22995 23010 33618 33618 0.00354693631857117 PPDPQVIY 8 Unmodified _PPDPQVIY_ 0 0 0 REV__ENSG00000113494|ENST00000618457|PRLR REV__ENSG00000113494|ENST00000618457|PRLR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1699523925781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 94.043 1 94.043 93.543 94.543 0 0 0 0 0.21486 1 18412 18412 3.9444 0.3479 1 + 34158 15345 22995 23010 33619 33619 0.00354693631857117 PPDPQVIY 8 Unmodified _PPDPQVIY_ 0 0 0 REV__ENSG00000113494|ENST00000618457|PRLR REV__ENSG00000113494|ENST00000618457|PRLR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651306152344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 94.072 1 94.072 93.572 94.572 0 0 0 0 0.23584 1 18418 18418 0.25148 0.12861 1 + 34159 15345 22995 23010 33620 33620 0.00354693631857117 PPDPQVIY 8 Unmodified _PPDPQVIY_ 0 0 0 REV__ENSG00000113494|ENST00000618457|PRLR REV__ENSG00000113494|ENST00000618457|PRLR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651306152344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 94.086 1 94.086 93.586 94.586 0 0 0 0 0.21486 1 18421 18421 3.9444 0.3479 1 + 34160 15345 22995 23010 33621 33621 0.00354693631857117 PPDPQVIY 8 Unmodified _PPDPQVIY_ 0 0 0 REV__ENSG00000113494|ENST00000618457|PRLR REV__ENSG00000113494|ENST00000618457|PRLR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 73.701 1 70.337 69.837 70.837 -3.3643 0 0 0 0.21486 1 14367 14367 3.9444 0 1 + 34161 15345 22995 23010 33622 33622 0.00354693631857117 PPDPQVIY 8 Unmodified _PPDPQVIY_ 0 0 0 REV__ENSG00000113494|ENST00000618457|PRLR REV__ENSG00000113494|ENST00000618457|PRLR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16455078125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 96.185 1 91.95 91.45 92.45 -4.2348 0 0 0 0.23584 1 18364 18364 0.12286 0 1 + 34162 15345 22995 23010 33623 33623 0.00354693631857117 PPDWLVTT 8 Unmodified _PPDWLVTT_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 78.764 1 75.3 74.8 75.8 -3.4633 0 0 0 0.23626 1 15379 15379 0.12286 0 1 34163 6230 22996 23011 33624 33624 0.003546936318684857 PPDWLVTT 8 Unmodified _PPDWLVTT_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 107.68 1 103.36 102.86 103.86 -4.32 0 0 0 0.23626 1 21211 21211 0.12286 0 1 34164 6230 22996 23011 33625 33625 0.003546936318684857 PPDWLVTT 8 Unmodified _PPDWLVTT_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1697692871094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.144 1 70.55 70.05 71.05 -3.594 0 0 0 0.21486 1 14077 14077 1.6526 0 1 34165 6230 22996 23011 33626 33626 0.003546936318684857 PPDWTLTV 8 Unmodified _PPDWTLTV_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1646423339844 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 120.31 1 115.78 115.28 116.28 -4.5221 0 0 0 0.21486 1 23720 23720 3.5965 0.8613 1 + 34166 17221 22997 23012 33627 33627 0.00354693631857117 PPDWTLTV 8 Unmodified _PPDWTLTV_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 141.58 1 136.93 136.43 137.43 -4.6493 0 0 0 0.21486 1 27968 27968 3.5965 0.8613 1 + 34167 17221 22997 23012 33628 33628 0.00354693631857117 PPDWTLTV 8 Unmodified _PPDWTLTV_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 101.32 1 97.02 96.52 97.52 -4.297 0 0 0 0.21486 1 19387 19387 1.3295 0.13619 1 + 34168 17221 22997 23012 33629 33629 0.00354693631857117 PPDWTLTV 8 Unmodified _PPDWTLTV_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1652526855469 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 120.76 1 116.12 115.62 116.62 -4.645 0 0 0 0.23626 1 23182 23182 0.12286 0.049601 1 + 34169 17221 22997 23012 33630 33630 0.00354693631857117 PPDWTLTV 8 Unmodified _PPDWTLTV_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 121.86 1 117.32 116.82 117.82 -4.5305 0 0 0 0.23626 1 23459 23459 0.62683 0.50396 1 + 34170 17221 22997 23012 33631 33631 0.00354693631857117 PPDWTLTV 8 Unmodified _PPDWTLTV_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 122.08 1 117.54 117.04 118.04 -4.5305 0 0 0 0.23626 1 23502 23502 0.62683 0.50396 1 + 34171 17221 22997 23012 33632 33632 0.00354693631857117 PPEIVLCC 8 Unmodified _PPEIVLCC_ 0 0 0 REV__ENST00000607124.1_1_6:27093880-27094111:-|nuORF REV__ENST00000607124.1_1_6:27093880-27094111:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2158203125 2 437.214075 872.413596 NaN NaN NaN NaN NaN NaN NaN 176.67 1 171.8 171.3 172.3 -4.8739 0 0 0 0.21486 1 35150 35150 0.79363 0 1 + 34172 23468 22998 23013 33633 33633 -0.027713935206861606 PPERTELS 8 Unmodified _PPERTELS_ 0 0 0 REV__nc|ENSG00000115266|O95996-3|APC2 REV__nc|ENSG00000115266|O95996-3|APC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16180419921875 3 310.162663 927.46616 NaN NaN NaN NaN NaN NaN NaN 105.49 1 105.49 104.99 105.99 0 0 0 0 0.23584 1 20733 20733 0.12286 0.049601 1 + 34173 15416 22999 23014 33634 33634 -0.0004739586186133238 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16522216796875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 26.565 1 26.565 26.065 27.065 0 0 0 0 0.23508 1 4656 4656 2.9952 0 1 34174 9017 23000 23015 33635 33635 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1644592285156 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 57.761 1 57.761 57.261 58.261 0 0 0 0 0.1964 1 11046 11046 0.40827 0.34428 1 34175 9017 23000 23015 33636 33636 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1695556640625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 57.788 1 57.788 57.288 58.288 0 0 0 0 0.1964 1 11051 11051 0.40827 0.34428 1 34176 9017 23000 23015 33637 33637 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 58.54 1 58.54 58.04 59.04 0 0 0 0 0.1964 1 11205 11205 0.40827 0.34428 1 34177 9017 23000 23015 33638 33638 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697692871094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 61.538 1 61.538 61.038 62.038 0 0 0 0 0.19665 1 11804 11804 0.40827 0.2854 1 34178 9017 23000 23015 33639 33639 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 61.557 1 61.557 61.057 62.057 0 0 0 0 0.19665 1 11807 11807 0.40827 0.40488 1 34179 9017 23000 23015 33640 33640 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 33.612 1 31.294 30.794 31.794 -2.3175 0 0 0 0.1964 1 6150 6150 0.40827 0.2854 1 34180 9017 23000 23015 33641 33641 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16326904296875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 38.944 1 36.395 35.895 36.895 -2.5491 0 0 0 0.1964 1 7231 7231 0.40827 0 1 34181 9017 23000 23015 33642 33642 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1645812988281 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 45.7 1 42.859 42.359 43.359 -2.8409 0 0 0 0.19665 1 8614 8614 0.40827 0.2854 1 34182 9017 23000 23015 33643 33643 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1643981933594 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 56.905 1 54.011 53.511 54.511 -2.8944 0 0 0 0.1964 1 10915 10915 0.40827 0.34428 1 34183 9017 23000 23015 33644 33644 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 60.267 1 57.334 56.834 57.834 -2.9333 0 0 0 0.19665 1 11594 11594 0.40827 0 1 34184 9017 23000 23015 33645 33645 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 60.282 1 57.348 56.848 57.848 -2.9333 0 0 0 0.23508 1 11597 11597 5.7319 0 1 34185 9017 23000 23015 33646 33646 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1646728515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 62.387 1 59.426 58.926 59.926 -2.9614 0 0 0 0.19665 1 12037 12037 0.40827 0 1 34186 9017 23000 23015 33647 33647 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 66.397 1 63.35 62.85 63.85 -3.047 0 0 0 0.19665 1 12865 12865 0.40827 0.37898 1 34187 9017 23000 23015 33648 33648 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 68.723 1 65.544 65.044 66.044 -3.1796 0 0 0 0.19698 1 13353 13353 0.40827 0 1 34188 9017 23000 23015 33649 33649 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.449 1 66.269 65.769 66.769 -3.1796 0 0 0 0.1964 1 13504 13504 0.073264 0 1 34189 9017 23000 23015 33650 33650 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1653137207031 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 72.462 1 69.151 68.651 69.651 -3.3107 0 0 0 0.19698 1 14122 14122 1.2148 1.092 1 34190 9017 23000 23015 33651 33651 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 73.682 1 70.317 69.817 70.817 -3.3643 0 0 0 0.19698 1 14364 14364 0.40827 0 1 34191 9017 23000 23015 33652 33652 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 73.921 1 70.557 70.057 71.057 -3.3643 0 0 0 0.1964 1 14415 14415 0.073264 0.0092761 1 34192 9017 23000 23015 33653 33653 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16448974609375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 82.109 1 78.552 78.052 79.052 -3.557 0 0 0 0.19665 1 16046 16046 0.40827 0.34428 1 34193 9017 23000 23015 33654 33654 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 110.33 1 105.96 105.46 106.46 -4.3776 0 0 0 0.1964 1 21747 21747 0.40827 0.34428 1 34194 9017 23000 23015 33655 33655 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1666564941406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 33.74 1 31.593 31.093 32.093 -2.1468 0 0 0 0.19665 1 5896 5896 0.40827 0.40488 1 34195 9017 23000 23015 33656 33656 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 60.013 1 56.699 56.199 57.199 -3.3139 0 0 0 0.1964 1 11170 11170 0.073264 0 1 34196 9017 23000 23015 33657 33657 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 64.684 1 61.225 60.725 61.725 -3.4581 0 0 0 0.19665 1 12093 12093 0.40827 0.37898 1 34197 9017 23000 23015 33658 33658 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 76.712 1 72.946 72.446 73.446 -3.7664 0 0 0 0.19665 1 14530 14530 0.40827 0 1 34198 9017 23000 23015 33659 33659 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1652526855469 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 80.85 1 77.011 76.511 77.511 -3.8392 0 0 0 0.19665 1 15347 15347 0.40827 0.37898 1 34199 9017 23000 23015 33660 33660 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 110.55 1 106.06 105.56 106.56 -4.4915 0 0 0 0.1964 1 21221 21221 0.40827 0.34428 1 34200 9017 23000 23015 33661 33661 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16436767578125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 47.777 1 44.827 44.327 45.327 -2.9499 0 0 0 0.1964 1 8732 8732 0.40827 0.335 1 34201 9017 23000 23015 33662 33662 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16436767578125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 47.797 1 44.847 44.347 45.347 -2.9499 0 0 0 0.23508 1 8736 8736 2.9952 1.151 1 34202 9017 23000 23015 33663 33663 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 48.244 1 45.294 44.794 45.794 -2.9499 0 0 0 0.1964 1 8827 8827 0.40827 0 1 34203 9017 23000 23015 33664 33664 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 61.125 1 57.885 57.385 58.385 -3.2395 0 0 0 0.1964 1 11438 11438 0.40827 0.34428 1 34204 9017 23000 23015 33665 33665 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.217 1 65.827 65.327 66.327 -3.3903 0 0 0 0.1964 1 13085 13085 0.073264 0.069883 1 34205 9017 23000 23015 33666 33666 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 70.845 1 67.378 66.878 67.878 -3.467 0 0 0 0.1964 1 13420 13420 0.073264 0.069883 1 34206 9017 23000 23015 33667 33667 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 73.792 1 70.198 69.698 70.698 -3.594 0 0 0 0.23508 1 14008 14008 2.9952 0 1 34207 9017 23000 23015 33668 33668 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1651306152344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.066 1 70.472 69.972 70.972 -3.594 0 0 0 0.19665 1 14061 14061 0.40827 0.37898 1 34208 9017 23000 23015 33669 33669 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1697692871094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.122 1 70.528 70.028 71.028 -3.594 0 0 0 0.19665 1 14072 14072 0.40827 0.37898 1 34209 9017 23000 23015 33670 33670 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1693420410156 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.028 1 71.434 70.934 71.934 -3.594 0 0 0 0.1964 1 14257 14257 0.073264 0.069883 1 34210 9017 23000 23015 33671 33671 0.003546936318457483 PPETPPPPP 9 Unmodified _PPETPPPPP_ 0 0 0 ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 78.001 1 74.342 73.842 74.842 -3.6588 0 0 0 0.19665 1 14858 14858 0.40827 0 1 34211 9017 23000 23015 33672 33672 0.003546936318457483 PPFDNQPLGP 10 Unmodified _PPFDNQPLGP_ 0 0 0 ENST00000244020.4_1_20:42086617-42086692:+|nuORF ENST00000244020.4_1_20:42086617-42086692:+|nuORF ENST00000244020.4_1_20:42086617-42086692:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2698974609375 2 541.269281 1080.52401 0.16651 9.0129E-05 3.227 0.0017467 3.3935 0.0018368 541.7747796842235 18.489 0.10275 17.178 17.108 17.211 -1.3109 4 2 2 0 0 0 0.71778 1 3011 3011 9.3831 2.0939 1 92448 34212 8196 23001 23016 33673 33673 -0.01303133936426093 PPFILLSHLS 10 Unmodified _PPFILLSHLS_ 0 0 0 ENSG00000070985|ENST00000696290|TRPM5;nc|ENSG00000070985|Q9NZQ8-2|TRPM5 ENSG00000070985|ENST00000696290|TRPM5 ENSG00000070985|ENST00000696290|TRPM5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2220458984375 3 375.221853 1122.64373 NaN NaN NaN NaN NaN NaN NaN 120.97 1 116.45 115.95 116.95 -4.5221 0 0 0 0.22588 1 23849 23849 0.77653 0 1 34213 1443 23002 23017 33674 33674 0.08731479408129417 PPFPHPHS 8 Unmodified _PPFPHPHS_ 0 0 0 REV__ENSG00000143368|ENST00000271628|SF3B4 REV__ENSG00000143368|ENST00000271628|SF3B4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2271423339844 2 458.22722 914.439886 NaN NaN NaN NaN NaN NaN NaN 150.47 1 145.74 145.24 146.24 -4.7323 0 0 0 0.23711 1 29886 29886 0.063987 0 1 + 34214 16719 23003 23018 33675 33675 -0.02075620242669629 PPFSFPLFVT 10 Unmodified _PPFSFPLFVT_ 0 0 0 REV__ENST00000374274.7_2_X:70279857-70280025:-|nuORF REV__ENST00000374274.7_2_X:70279857-70280025:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3109130859375 2 576.310418 1150.60628 NaN NaN NaN NaN NaN NaN NaN 125.96 1 121.36 120.86 121.86 -4.5984 0 0 0 0.22576 1 24832 24832 14.838 0 1 + 34215 21055 23004 23019 33676 33676 0.037003881425107465 PPGANKKVEA 10 Unmodified _PPGANKKVEA_ 0 0 0 ENST00000440748.1_1_7:37415149-37415623:+|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.0340270996094 3 337.525825 1009.55564 -0.35513 -0.00011986 0.26684 9.0065E-05 -0.088288 -2.9799E-05 337.5259387697396 24.269 0.40987 24.269 24.066 24.475 0 14 11 2 0 0 0 0.91149 1 4202 4202 4.1895 2.3453 1 473010 34216 9887 23005 23020 33677 33677 0.05124858817521272 PPGANKKVEA 10 Unmodified _PPGANKKVEA_ 0 0 0 ENST00000440748.1_1_7:37415149-37415623:+|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 337.525825 1009.55564 0.10757 3.6309E-05 -0.28348 -9.5681E-05 -0.17591 -5.9373E-05 337.525741342886 25.824 0.41349 24.19 23.995 24.408 -1.6347 -0.006801 -0.00063407 NaN 4.1895 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 526320 34217 9887 23005 23020 0.05124858817521272 PPGANKKVEA 10 Unmodified _PPGANKKVEA_ 0 0 0 ENST00000440748.1_1_7:37415149-37415623:+|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 337.525825 1009.55564 -0.71807 -0.00024237 0.75948 0.00025634 0.041412 1.3977E-05 337.5260795487085 26.053 0.34665 24.13 23.917 24.264 -1.9222 -0.06601 0.000422 NaN 4.1895 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 671310 34218 9887 23005 23020 0.05124858817521272 PPGERGRGWE 10 Unmodified _PPGERGRGWE_ 0 0 0 REV__ENST00000354532.7_1_19:42410900-42411408:+|nuORF REV__ENST00000354532.7_1_19:42410900-42411408:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2225036621094 3 380.856345 1139.5472 -0.40928 -0.00015588 -0.3621 -0.00013791 -0.77138 -0.00029378 380.85608970434544 34.638 0.37797 32.321 32.155 32.533 -2.3175 14 10 2 0 0 0 0.91149 1 6406 6406 1.9064 0 1 544470 + 34219 20779 23006 23021 33678 33678 -0.016986950990940386 PPGIMSVLD 9 Unmodified _PPGIMSVLD_ 0 0 0 ENST00000601502.1_1_19:8608994-8610536:-|nuORF;MYO1F|p.L967Cfs*94|1|0.31|ENSG00000142347|chr19:8522785-8522785|G/-|frameshift_variant;ENSG00000142347|ENST00000644032|MYO1F ENST00000601502.1_1_19:8608994-8610536:-|nuORF ENST00000601502.1_1_19:8608994-8610536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16961669921875 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 67.831 1 67.831 67.331 68.331 0 0 0 0 0.19624 1 13113 13113 0.0033805 0 1 34220 11706 23007 23022 33679 33679 0.00691620414204408 PPGIMSVLD 9 Unmodified _PPGIMSVLD_ 0 0 0 ENST00000601502.1_1_19:8608994-8610536:-|nuORF;MYO1F|p.L967Cfs*94|1|0.31|ENSG00000142347|chr19:8522785-8522785|G/-|frameshift_variant;ENSG00000142347|ENST00000644032|MYO1F ENST00000601502.1_1_19:8608994-8610536:-|nuORF ENST00000601502.1_1_19:8608994-8610536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648254394531 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 82.7 1 79.092 78.592 79.592 -3.6079 0 0 0 0.1964 1 16161 16161 0.0033805 0 1 34221 11706 23007 23022 33680 33680 0.00691620414204408 PPGIMSVLD 9 Unmodified _PPGIMSVLD_ 0 0 0 ENST00000601502.1_1_19:8608994-8610536:-|nuORF;MYO1F|p.L967Cfs*94|1|0.31|ENSG00000142347|chr19:8522785-8522785|G/-|frameshift_variant;ENSG00000142347|ENST00000644032|MYO1F ENST00000601502.1_1_19:8608994-8610536:-|nuORF ENST00000601502.1_1_19:8608994-8610536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1617431640625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 111.02 1 106.53 106.03 107.03 -4.4915 0 0 0 0.19638 1 21309 21309 0.073264 0.043981 1 34222 11706 23007 23022 33681 33681 0.00691620414204408 PPGIMSVLD 9 Unmodified _PPGIMSVLD_ 0 0 0 ENST00000601502.1_1_19:8608994-8610536:-|nuORF;MYO1F|p.L967Cfs*94|1|0.31|ENSG00000142347|chr19:8522785-8522785|G/-|frameshift_variant;ENSG00000142347|ENST00000644032|MYO1F ENST00000601502.1_1_19:8608994-8610536:-|nuORF ENST00000601502.1_1_19:8608994-8610536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16448974609375 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 69.83 1 66.392 65.892 66.892 -3.4388 0 0 0 0.19624 1 13213 13213 0.0033805 0 1 34223 11706 23007 23022 33682 33682 0.00691620414204408 PPGIMSVLD 9 Unmodified _PPGIMSVLD_ 0 0 0 ENST00000601502.1_1_19:8608994-8610536:-|nuORF;MYO1F|p.L967Cfs*94|1|0.31|ENSG00000142347|chr19:8522785-8522785|G/-|frameshift_variant;ENSG00000142347|ENST00000644032|MYO1F ENST00000601502.1_1_19:8608994-8610536:-|nuORF ENST00000601502.1_1_19:8608994-8610536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 70.079 1 66.612 66.112 67.112 -3.467 0 0 0 0.23508 1 13265 13265 2.9952 1.8019 1 34224 11706 23007 23022 33683 33683 0.00691620414204408 PPGIMSVLD 9 Unmodified _PPGIMSVLD_ 0 0 0 ENST00000601502.1_1_19:8608994-8610536:-|nuORF;MYO1F|p.L967Cfs*94|1|0.31|ENSG00000142347|chr19:8522785-8522785|G/-|frameshift_variant;ENSG00000142347|ENST00000644032|MYO1F ENST00000601502.1_1_19:8608994-8610536:-|nuORF ENST00000601502.1_1_19:8608994-8610536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650695800781 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 106.13 1 102.04 101.54 102.54 -4.0913 0 0 0 0.19624 1 20408 20408 0.0033805 0 1 34225 11706 23007 23022 33684 33684 0.00691620414204408 PPGPAPTL 8 Unmodified _PPGPAPTL_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2161865234375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 176.63 1 171.84 171.34 172.34 -4.7898 0 0 0 0.23899 1 36120 36120 1.3295 0 1 34226 7985 23008 23023 33685 33685 0.027670567772474897 PPGQRCHH 8 Unmodified _PPGQRCHH_ 0 0 0 CLCN1|p.R453Pfs*56|1|0.05|ENSG00000188037|chr7:143332824-143332825|-/C|frameshift_variant CLCN1|p.R453Pfs*56|1|0.05|ENSG00000188037|chr7:143332824-143332825|-/C|frameshift_variant CLCN1|p.R453Pfs*56|1|0.05|ENSG00000188037|chr7:143332824-143332825|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.12841796875 3 311.148694 930.424253 NaN NaN NaN NaN NaN NaN NaN 115.05 1 110.58 110.08 111.08 -4.4726 0 0 0 0.21486 1 22676 22676 0.45834 0 1 34227 567 23009 23024 33686 33686 -0.04374230031362458 PPGQRCHH 8 Unmodified _PPGQRCHH_ 0 0 0 CLCN1|p.R453Pfs*56|1|0.05|ENSG00000188037|chr7:143332824-143332825|-/C|frameshift_variant CLCN1|p.R453Pfs*56|1|0.05|ENSG00000188037|chr7:143332824-143332825|-/C|frameshift_variant CLCN1|p.R453Pfs*56|1|0.05|ENSG00000188037|chr7:143332824-143332825|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2045593261719 3 311.148694 930.424253 NaN NaN NaN NaN NaN NaN NaN 129.11 1 124.48 123.98 124.98 -4.6292 0 0 0 0.21486 1 25450 25450 0.45834 0 1 34228 567 23009 23024 33687 33687 -0.04374230031362458 PPGSPKSPG 9 Unmodified _PPGSPKSPG_ 0 0 0 PERM1|p.Q529Rfs*39|1|0.27|ENSG00000187642|chr1:979445-979445|G/-|frameshift_variant;PERM1|p.P563Lfs*5|1|0.17|ENSG00000187642|chr1:979342-979342|G/-|frameshift_variant;nc|ENSG00000187642|Q5SV97-3|PERM1;ENSG00000187642|ENST00000433179|PERM1 PERM1|p.Q529Rfs*39|1|0.27|ENSG00000187642|chr1:979445-979445|G/-|frameshift_variant PERM1|p.Q529Rfs*39|1|0.27|ENSG00000187642|chr1:979445-979445|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 412.10809326171875 2 412.21906 822.423567 NaN NaN NaN NaN NaN NaN NaN 25.115 1 23.581 23.081 24.081 -1.5342 0 0 0 0.23508 1 4115 4115 4.3292 0.38484 1 34229 7117 23010 23025 33688 33688 0.00525253800583414 PPGVETDL 8 Unmodified _PPGVETDL_ 0 0 0 ENST00000545388.2_1_16:71955203-71956613:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000545388.2_1_16:71955203-71956613:+|nuORF ENST00000545388.2_1_16:71955203-71956613:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 414.2121276855469 2 414.210901 826.407249 NaN NaN NaN NaN NaN NaN NaN 66.6 1 66.6 66.1 67.1 0 0 0 0 0.22847 1 12868 12868 10.074 8.6189 1 34230 6766 23011 23026 33689 33689 -0.01289872156189631 PPHGRQQERGP 11 Unmodified _PPHGRQQERGP_ 0 0 0 REV__ENST00000408965.3_1_8:48650755-48651031:-|nuORF REV__ENST00000408965.3_1_8:48650755-48651031:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7749633789062 2 629.823609 1257.63267 0.332 0.0002091 -0.075115 -4.7309E-05 0.25689 0.00016179 629.8236068002079 17.293 0.41565 17.293 17.064 17.48 0 23 11 3 0 0 0 0.81621 1 2711 2711 1.4819 0 1 5229000 + 34231 21400 23012 23027 33690 33690 0.014154700865447012 PPHGRQQERGP 11 Unmodified _PPHGRQQERGP_ 0 0 0 REV__ENST00000408965.3_1_8:48650755-48651031:-|nuORF REV__ENST00000408965.3_1_8:48650755-48651031:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 629.823609 1257.63267 0.332 0.0002091 -0.075115 -4.7309E-05 0.25689 0.00016179 629.8236068002079 17.293 0.41565 17.293 17.064 17.48 0 -0.0064592 -5.8224E-06 NaN 1.4819 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 5229000 + 34232 21400 23012 23027 0.014154700865447012 PPHGRQQERGP 11 Unmodified _PPHGRQQERGP_ 0 0 0 REV__ENST00000408965.3_1_8:48650755-48651031:-|nuORF REV__ENST00000408965.3_1_8:48650755-48651031:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 629.823609 1257.63267 0.93974 0.00059187 -0.605 -0.00038104 0.33475 0.00021083 629.8232254378831 18.679 0.34251 17.368 17.211 17.553 -1.3109 0.068402 -0.00067329 NaN 1.4819 26 9 4 NaN NaN NaN NaN 0 NaN NaN 0 4396000 + 34233 21400 23012 23027 0.014154700865447012 PPHGRQQERGP 11 Unmodified _PPHGRQQERGP_ 0 0 0 REV__ENST00000408965.3_1_8:48650755-48651031:-|nuORF REV__ENST00000408965.3_1_8:48650755-48651031:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 629.823609 1257.63267 -0.13164 -8.291E-05 0.33978 0.000214 0.20814 0.00013109 629.8238709237938 18.563 0.31601 17.238 17.116 17.432 -1.3251 -0.061943 0.0005168 NaN 1.4819 20 8 4 NaN NaN NaN NaN 0 NaN NaN 0 4621300 + 34234 21400 23012 23027 0.014154700865447012 PPHPGTGG 8 Unmodified _PPHPGTGG_ 0 0 0 REV__CDHR5|p.G554Rfs*161|1|0.26|ENSG00000099834|chr11:618899-618900|-/G|frameshift_variant REV__CDHR5|p.G554Rfs*161|1|0.26|ENSG00000099834|chr11:618899-618900|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2124328613281 2 360.177195 718.339838 NaN NaN NaN NaN NaN NaN NaN 45.148 1 42.282 41.782 42.782 -2.8653 0 0 0 0.2396 1 8191 8191 0.30703 0 1 + 34235 13350 23013 23028 33691 33691 -0.03059857576477043 PPHPPPPPP 9 Unmodified _PPHPPPPPP_ 0 0 0 R3HDM1|p.A971Lfs*26|1|0.4|ENSG00000048991|chr2:135722514-135722514|A/-|frameshift_variant;ENSG00000048991|ENST00000683871|R3HDM1;ENST00000261716.7_1_17:27717806-27778530:+|nuORF;EN1|p.F106Sfs*6|1|0.52|ENSG00000163064|chr2:118846851-118846851|A/-|frameshift_variant;EN1|p.K119Tfs*27|1|0.25|ENSG00000163064|chr2:118846812-118846813|-/G|frameshift_variant;HOXD8|p.C124Afs*53|1|0.78|ENSG00000175879|chr2:176130730-176130730|C/-|frameshift_variant;nc|ENSG00000175879|P13378-2|HOXD8;ENSG00000175879|ENST00000313173|HOXD8;ENSG00000163064|ENST00000295206|EN1;nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;nc|ENSG00000066855|Q15390-2|MTFR1;ENSG00000066855|ENST00000262146|MTFR1;ENST00000424808.6_1_8:66582187-66620357:+|nuORF R3HDM1|p.A971Lfs*26|1|0.4|ENSG00000048991|chr2:135722514-135722514|A/-|frameshift_variant;nc|ENSG00000066855|Q15390-2|MTFR1;REV__nc|ENSG00000182095|O15417-2|TNRC18 REV__nc|ENSG00000182095|O15417-2|TNRC18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 467.1822509765625 2 466.75307 931.491587 -0.31323 -0.0001462 0.40469 0.00018889 0.091461 4.269E-05 466.75326963743316 40.113 0.95394 37.503 36.801 37.755 -2.6091 40 26 2 0 0 0 0.21602 1 7489 7489 36.466 0 1 940090 34236 24199;1378;1233 23014 23029 33692 33692 0.0231012345121826 PPIFGLYSS 9 Unmodified _PPIFGLYSS_ 0 0 0 nc|ENSG00000170615|P58743-4|SLC26A5;nc|ENSG00000170615|P58743-3|SLC26A5;SLC26A5|p.I619Nfs*9|2|0.3|ENSG00000170615|chr7:103377731-103377732|-/G|frameshift_variant;nc|ENSG00000170615|P58743-2|SLC26A5;SLC26A5|p.F693Lfs*19|1|0.36|ENSG00000170615|chr7:103374555-103374555|A/-|frameshift_variant;nc|ENSG00000170615|P58743-5|SLC26A5;nc|ENSG00000170615|P58743-6|SLC26A5;ENSG00000170615|ENST00000306312|SLC26A5 nc|ENSG00000170615|P58743-4|SLC26A5 nc|ENSG00000170615|P58743-4|SLC26A5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2554626464844 2 490.758018 979.501483 -0.33891 -0.00016632 -1.6226 -0.00079632 -1.9615 -0.00096265 490.7569679893076 17.837 0.4144 16.565 16.178 16.593 -1.2722 18 11 2 0 0 0 0.8204 1 2639 2639 8.5933 0.68312 1 1461700 34237 6086 23015 23030 33693 33693 0.010912666659578463 PPIHSLHQ 8 Unmodified _PPIHSLHQ_ 0 0 0 REV__BMPER|p.N305Kfs*25|1|0.05|ENSG00000164619|chr7:34055289-34055290|-/AAATAGAAATT|frameshift_variant REV__BMPER|p.N305Kfs*25|1|0.05|ENSG00000164619|chr7:34055289-34055290|-/AAATAGAAATT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.170654296875 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 116.28 1 111.79 111.29 112.29 -4.486 0 0 0 0.21486 1 22928 22928 1.8442 0 1 + 34238 13198 23016 23031 33694 33694 0.026003378201380656 PPIPRQPD 8 Unmodified _PPIPRQPD_ 0 0 0 REV__ENSG00000116962|ENST00000264187|NID1 REV__ENSG00000116962|ENST00000264187|NID1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353210449219 2 460.253434 918.492316 -0.081432 -3.7479E-05 0.24813 0.0001142 0.1667 7.6725E-05 460.25356939280226 78.955 1.0184 75.151 74.663 75.681 -3.8048 34 28 2 0 0 0 0.95515 1 15042 15042 10.824 2.2306 1 1159100 + 34239 15508 23017 23032 33695 33695 0.029809181002860896 PPISSHKY 8 Unmodified _PPISSHKY_ 0 0 0 REV__ENSG00000177465|ENST00000326303|ACOT4 REV__ENSG00000177465|ENST00000326303|ACOT4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16845703125 3 310.167749 927.481417 NaN NaN NaN NaN NaN NaN NaN 38.529 1 38.529 38.029 39.029 0 0 0 0 0.22834 1 7146 7146 0.62683 0 1 + 34240 18559 23018 23033 33696 33696 0.014775157260032756 PPISSHKY 8 Unmodified _PPISSHKY_ 0 0 0 REV__ENSG00000177465|ENST00000326303|ACOT4 REV__ENSG00000177465|ENST00000326303|ACOT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1611022949219 3 310.167749 927.481417 -0.49853 -0.00015463 0.92136 0.00028578 0.42283 0.00013115 310.16802685559935 40.647 0.32112 38.013 37.935 38.257 -2.6348 12 8 2 0 0 0 8448 1 7614 7614 0.62683 0 1 1072200 + 34241 18559 23018 23033 33697 33697 0.014775157260032756 PPIYVWGP 8 Unmodified _PPIYVWGP_ 0 0 0 REV__ENST00000553112.5_1_12:113834968-113841579:-|nuORF REV__ENST00000553112.5_1_12:113834968-113841579:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698913574219 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 34.017 1 34.017 33.517 34.517 0 0 0 0 0.21486 1 6218 6218 1.8442 0 1 + 34242 16246 23019 23034 33698 33698 0.018796052197103563 PPKAGYFAPP 10 Unmodified _PPKAGYFAPP_ 0 0 0 REV__CUX2|p.T518I|1|0.37|ENSG00000111249|chr12:111310335-111310335|C/T|missense_variant REV__CUX2|p.T518I|1|0.37|ENSG00000111249|chr12:111310335-111310335|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2596435546875 2 522.779285 1043.54402 0.0098976 5.1743E-06 -1.8531 -0.00096878 -1.8432 -0.00096361 522.7794196897906 19.965 0.34472 18.569 18.379 18.723 -1.3966 20 9 3 0 0 0 0.87854 1 3300 3300 9.3831 4.0862 1 1468900 + 34243 13620 23020 23035 33699 33699 0.023986617941773147 PPKCPPKY 8 Unmodified _PPKCPPKY_ 0 0 0 LCE2C|p.C32Y|1|0.4|ENSG00000187180|chr1:152676110-152676110|G/A|missense_variant LCE2C|p.C32Y|1|0.4|ENSG00000187180|chr1:152676110-152676110|G/A|missense_variant LCE2C|p.C32Y|1|0.4|ENSG00000187180|chr1:152676110-152676110|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24981689453125 2 465.249306 928.484059 NaN NaN NaN NaN NaN NaN NaN 40.594 1 38.104 37.604 38.604 -2.4896 0 0 0 0.21486 1 7271 7271 9.3474 0 1 34244 12071 23021 23036 33700 33700 0.01695647859287419 PPKGKLRSLC 10 Unmodified _PPKGKLRSLC_ 0 0 0 nc|ENSG00000143365|P51449-2|RORC;ENSG00000143365|ENST00000318247|RORC nc|ENSG00000143365|P51449-2|RORC nc|ENSG00000143365|P51449-2|RORC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 549.8241577148438 2 549.826243 1097.63793 NaN NaN NaN NaN NaN NaN NaN 10.405 1 9.3382 8.8382 9.8382 -1.0664 0 0 0 0.22588 1 1124 1124 0.40072 0 1 34245 4475 23022 23037 33701 33701 0.09302057624813642 PPKMIPER 8 Unmodified _PPKMIPER_ 0 0 0 nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2 nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.18304443359375 3 323.184634 966.532072 NaN NaN NaN NaN NaN NaN NaN 60.477 1 57.253 56.753 57.753 -3.2237 0 0 0 0.21486 1 11311 11311 3.9444 0 1 34246 5965 23023 23038 33702 33702 0.04746721779338259 PPKMSKPGS 9 Unmodified _PPKMSKPGS_ 0 0 0 KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-6|KMT2E KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698913574219 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 32.152 1 32.152 31.652 32.652 0 0 0 0 0.23508 1 5831 5831 2.4985 0.65425 1 34247 993 23024 23039 33703 33703 0.018144425083619353 PPKNKARLKKI 11 Unmodified _PPKNKARLKKI_ 0 0 0 ENSG00000107815|ENST00000311916|TWNK ENSG00000107815|ENST00000311916|TWNK ENSG00000107815|ENST00000311916|TWNK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 646.92236328125 2 646.929889 1291.84522 NaN NaN NaN NaN NaN NaN NaN 167.43 1 162.54 162.04 163.04 -4.8916 0 0 0 0.22632 1 32929 32929 0.0059557 0 1 34248 2439 23025 23040 33704 33704 0.2109758816447993 PPKPPRSKAT 10 Unmodified _PPKPPRSKAT_ 0 0 0 ENSG00000171798|ENST00000304613|KNDC1;nc|ENSG00000171798|Q76NI1-4|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2156677246094 3 360.217102 1077.62948 NaN NaN NaN NaN NaN NaN NaN 59.635 1 56.702 56.202 57.202 -2.9333 0 0 0 0.22588 1 11469 11469 6.1918 0.40842 1 34249 6171 23026 23041 33705 33705 0.09376826979860198 PPKQASACLE 10 Unmodified _PPKQASACLE_ 0 0 0 REV__nc|ENSG00000213889|Q8N819-3|PPM1N REV__nc|ENSG00000213889|Q8N819-3|PPM1N MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2628784179688 2 522.263142 1042.51173 NaN NaN NaN NaN NaN NaN NaN 158.96 1 158.96 158.46 159.46 0 0 0 0 2.8426 1 31918 31918 0.063865 0 1 + 34250 19649 23027 23042 33706 33706 -0.007824936711358532 PPKVHYET 8 Unmodified _PPKVHYET_ 0 0 0 ENST00000520184.1_3_8:28719721-28747442:-|nuORF ENST00000520184.1_3_8:28719721-28747442:-|nuORF ENST00000520184.1_3_8:28719721-28747442:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1806640625 3 324.17127 969.491981 NaN NaN NaN NaN NaN NaN NaN 60.189 1 56.966 56.466 57.466 -3.2237 0 0 0 0.21486 1 11254 11254 3.9444 0 1 34251 10832 23028 23043 33707 33707 0.006014983804220719 PPLAGVAA 8 Unmodified _PPLAGVAA_ 0 0 0 NFATC2|p.K321Rfs*70|2|0.39|ENSG00000101096|chr20:51523281-51523281|G/-|frameshift_variant;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2 NFATC2|p.K321Rfs*70|2|0.39|ENSG00000101096|chr20:51523281-51523281|G/-|frameshift_variant NFATC2|p.K321Rfs*70|2|0.39|ENSG00000101096|chr20:51523281-51523281|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 348.2071533203125 2 348.207964 694.401375 NaN NaN NaN NaN NaN NaN NaN 78.34 1 74.574 74.074 75.074 -3.7664 0 0 0 0.21486 1 14856 14856 2.8892 0 1 34252 2034 23029 23044 33708 33708 0.04195074122787901 PPLAPPGA 8 Unmodified _PPLAPPGA_ 0 0 0 nc|ENSG00000125813|P15863-2|PAX1;ENSG00000125813|ENST00000613128|PAX1;nc|ENSG00000125813|P15863-3|PAX1;nc|ENSG00000125813|P15863|PAX1 REV__ENSG00000141858|ENST00000533683|SAMD1 REV__ENSG00000141858|ENST00000533683|SAMD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.207275390625 2 360.207964 718.401375 NaN NaN NaN NaN NaN NaN NaN 126.19 1 121.39 120.89 121.89 -4.7958 0 0 0 0.23899 1 24221 24221 1.3295 0 1 34253 3389 23030 23045 33709 33709 0.03091074122801274 PPLCQKRYF 9 Unmodified _PPLCQKRYF_ 0 0 0 ENST00000509320.5_1_14:73404720-73412622:+|nuORF ENST00000509320.5_1_14:73404720-73412622:+|nuORF ENST00000509320.5_1_14:73404720-73412622:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.326416015625 2 576.305144 1150.59573 NaN NaN NaN NaN NaN NaN NaN 160.24 1 155.44 154.94 155.94 -4.7952 0 0 0 0.23508 1 31865 31865 8.5933 0 1 34254 10730 23031 23046 33710 33710 0.02646082216438117 PPLDDKPF 8 Unmodified _PPLDDKPF_ 0 0 0 ENST00000508684.5_1_4:2900928-2901297:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF ENST00000508684.5_1_4:2900928-2901297:+|nuORF ENST00000508684.5_1_4:2900928-2901297:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 88.054 1 84.059 83.559 84.559 -3.9953 0 0 0 0.23837 1 16770 16770 0.12286 0 1 34255 10715 23032 23047 33711 33711 0.00354693631857117 PPLDQCPPL 9 Unmodified _PPLDQCPPL_ 0 0 0 REV__RGS3|p.R851Gfs*5|1|0.42|ENSG00000138835|chr9:113583958-113583958|C/-|frameshift_variant REV__RGS3|p.R851Gfs*5|1|0.42|ENSG00000138835|chr9:113583958-113583958|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2648010253906 2 490.249503 978.484453 NaN NaN NaN NaN NaN NaN NaN 114.35 1 109.79 109.29 110.29 -4.555 0 0 0 0.21408 1 21955 21955 19.439 1.304 1 + 34256 16498 23033 23048 33712 33712 -0.0056497721150208235 PPLDQCPPL 9 Unmodified _PPLDQCPPL_ 0 0 0 REV__RGS3|p.R851Gfs*5|1|0.42|ENSG00000138835|chr9:113583958-113583958|C/-|frameshift_variant REV__RGS3|p.R851Gfs*5|1|0.42|ENSG00000138835|chr9:113583958-113583958|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25567626953125 2 490.249503 978.484453 NaN NaN NaN NaN NaN NaN NaN 114.09 1 109.78 109.28 110.28 -4.3136 0 0 0 0.21408 1 21975 21975 19.439 1.304 1 + 34257 16498 23033 23048 33713 33713 -0.0056497721150208235 PPLEGYKKF 9 Unmodified _PPLEGYKKF_ 0 0 0 REV__RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant REV__RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20111083984375 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 120.79 1 116.15 115.65 116.65 -4.645 0 0 0 0.23508 1 23187 23187 5.2969 0.96765 1 + 34258 16678 23034 23049 33714 33714 0.05019217482708882 PPLFLLLLLL 10 Unmodified _PPLFLLLLLL_ 0 0 0 CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant;CTSA|p.F173Pfs*39|1|0.09|ENSG00000064601|chr20:45892795-45892796|TT/-|frameshift_variant;CTSA|p.C331Afs*36|1|0.47|ENSG00000064601|chr20:45895029-45895029|C/-|frameshift_variant;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3304443359375 2 576.393754 1150.77295 NaN NaN NaN NaN NaN NaN NaN 124.06 1 124.06 123.56 124.56 0 0 0 0 0.22588 1 24457 24457 0.45834 0 1 34259 752 23035 23050 33715 33715 0.2035986103826417 PPLFLLLLLL 10 Unmodified _PPLFLLLLLL_ 0 0 0 CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant;CTSA|p.F173Pfs*39|1|0.09|ENSG00000064601|chr20:45892795-45892796|TT/-|frameshift_variant;CTSA|p.C331Afs*36|1|0.47|ENSG00000064601|chr20:45895029-45895029|C/-|frameshift_variant;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3390502929688 2 576.393754 1150.77295 NaN NaN NaN NaN NaN NaN NaN 157.46 1 152.18 151.68 152.68 -5.2854 0 0 0 0.22588 1 30557 30557 1.8442 0.36234 1 34260 752 23035 23050 33716 33716 0.2035986103826417 PPLFPLWL 8 Unmodified _PPLFPLWL_ 0 0 0 REV__nc|ENSG00000187045|Q8IU80-2|TMPRSS6 REV__nc|ENSG00000187045|Q8IU80-2|TMPRSS6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 491.286865234375 2 491.791664 981.568775 0.24017 0.00011811 0.84657 0.00041634 1.0867 0.00053445 491.79199246554924 161.04 0.78172 155.81 155.47 156.26 -5.2299 32 21 2 0 0 0 0.89951 1 31262 31262 0.0082765 0 1 2487000 + 34261 24213 23036 23051 33717 33717 0.07725341667571684 PPLIKVYV 8 Unmodified _PPLIKVYV_ 0 0 0 REV__ENSG00000083857|ENST00000441802|FAT1;REV__FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant REV__ENSG00000083857|ENST00000441802|FAT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2303161621094 3 310.20039 927.57934 -0.28045 -8.6995E-05 -2.4504 -0.00076011 -2.7308 -0.00084711 310.1998086655088 45.191 0.39594 42.401 42.13 42.526 -2.79 13 10 2 0 0 0 1.0268 1 8474 8474 0.45834 0 1 348630 + 34262 14460;23525 23037 23052 33718 33718 0.11265324321982462 PPLLLRRLLL 10 Unmodified _PPLLLRRLLL_ 0 0 0 REV__ENST00000497343.5_1_3:160473400-160474084:+|nuORF REV__ENST00000497343.5_1_3:160473400-160474084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2891235351562 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 151.14 1 145.9 145.4 146.4 -5.2365 0 0 0 0.22588 1 29292 29292 4.3292 2.485 1 34263 22402 23038 23053 33719 33719 0.22939988766893293 PPLLPAMAL 9 Unmodified _PPLLPAMAL_ 0 0 0 REV__ENST00000361937.7_1_15:41388526-41408484:-|nuORF REV__ENST00000361937.7_1_15:41388526-41408484:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.2218322753906 3 308.185863 921.53576 NaN NaN NaN NaN NaN NaN NaN 78.813 1 75.337 74.837 75.837 -3.4758 0 0 0 0.23508 1 15389 15389 1.1933 0 1 + 34264 20893 23039 23054 33720 33720 0.07185391553184672 PPLLPAMAL 9 Unmodified _PPLLPAMAL_ 0 0 0 REV__ENST00000361937.7_1_15:41388526-41408484:-|nuORF REV__ENST00000361937.7_1_15:41388526-41408484:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.19403076171875 3 308.185863 921.53576 NaN NaN NaN NaN NaN NaN NaN 114.91 1 110.43 109.93 110.93 -4.4726 0 0 0 0.23508 1 22646 22646 2.9952 0 1 + 34265 20893 23039 23054 33721 33721 0.07185391553184672 PPLLPAMAL 9 Unmodified _PPLLPAMAL_ 0 0 0 REV__ENST00000361937.7_1_15:41388526-41408484:-|nuORF REV__ENST00000361937.7_1_15:41388526-41408484:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.2215270996094 3 308.185863 921.53576 NaN NaN NaN NaN NaN NaN NaN 156.52 1 151.23 150.73 151.73 -5.2854 0 0 0 0.23508 1 30364 30364 0.26902 0 1 + 34266 20893 23039 23054 33722 33722 0.07185391553184672 PPLLPAMAL 9 Unmodified _PPLLPAMAL_ 0 0 0 REV__ENST00000361937.7_1_15:41388526-41408484:-|nuORF REV__ENST00000361937.7_1_15:41388526-41408484:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.2221374511719 3 308.185863 921.53576 NaN NaN NaN NaN NaN NaN NaN 158.03 1 152.76 152.26 153.26 -5.2748 0 0 0 0.23508 1 30673 30673 0.26902 0 1 + 34267 20893 23039 23054 33723 33723 0.07185391553184672 PPLLPRKR 8 Unmodified _PPLLPRKR_ 0 0 0 REV__ENST00000370382.7_2_1:92546023-92546083:+|nuORF REV__ENST00000370382.7_2_1:92546023-92546083:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 326.4790344238281 3 326.218666 975.634169 NaN NaN NaN NaN NaN NaN NaN 125.69 1 125.69 125.19 126.19 0 0 0 0 0.2396 1 24792 24792 0.063987 0 1 + 34268 20981 23040 23055 33724 33724 0.14537755913272576 PPLLVLISP 9 Unmodified _PPLLVLISP_ 0 0 0 REV__ENST00000397492.1_1_22:32346295-32352776:+|nuORF REV__ENST00000397492.1_1_22:32346295-32352776:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.7088623046875 3 316.875795 947.605554 NaN NaN NaN NaN NaN NaN NaN 12.901 1 12.901 12.401 13.401 0 0 0 0 0.19623 1 1828 1828 0.073264 0 1 + 34269 21306 23041 23056 33725 33725 0.1296559349347035 PPLMKKII 8 Unmodified _PPLMKKII_ 0 0 0 KMT2A|p.K1938Sfs*43|1|0.42|ENSG00000118058|chr11:118498386-118498386|A/-|frameshift_variant;KMT2A|p.L3197Wfs*15|1|0.31|ENSG00000118058|chr11:118505488-118505488|T/-|frameshift_variant;nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A KMT2A|p.K1938Sfs*43|1|0.42|ENSG00000118058|chr11:118498386-118498386|A/-|frameshift_variant KMT2A|p.K1938Sfs*43|1|0.42|ENSG00000118058|chr11:118498386-118498386|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.87353515625 3 313.873508 938.598695 NaN NaN NaN NaN NaN NaN NaN 8.318 1 7.6388 7.1388 8.1388 -0.67913 0 0 0 0.21486 1 851 851 0 0 1 34270 3014 23042 23057 33726 33726 0.12693957341264195 PPLPGATP 8 Unmodified _PPLPGATP_ 0 0 0 nc|ENSG00000108375|Q68DV7-4|RNF43;ENST00000509600.1_1_4:10117520-10118290:-|nuORF nc|ENSG00000108375|Q68DV7-4|RNF43 nc|ENSG00000108375|Q68DV7-4|RNF43 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2148132324219 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 174.13 1 174.13 173.63 174.63 0 0 0 0 0.2396 1 36036 36036 0.12286 0 1 34271 12279 23043 23058 33727 33727 0.027670567772474897 PPLPGRGGV 9 Unmodified _PPLPGRGGV_ 0 0 0 REV__ENST00000573090.1_1_17:79213181-79213574:+|nuORF REV__ENST00000573090.1_1_17:79213181-79213574:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2508544921875 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 159.3 1 154.02 153.52 154.52 -5.2748 0 0 0 0.23508 1 30916 30916 5.2307 0 1 + 34272 23181 23044 23059 33728 33728 0.056532393084808064 PPLPKLLKQ 9 Unmodified _PPLPKLLKQ_ 0 0 0 ENST00000289081.7_1_9:98011544-98079973:-|nuORF ENST00000289081.7_1_9:98011544-98079973:-|nuORF ENST00000289081.7_1_9:98011544-98079973:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.23150634765625 3 345.23046 1032.66955 NaN NaN NaN NaN NaN NaN NaN 39.513 1 37.071 36.571 37.571 -2.4419 0 0 0 0.23508 1 7059 7059 0.26902 0 1 34273 8466 23045 23060 33729 33729 0.1545237365041885 PPLPYSASP 9 Unmodified _PPLPYSASP_ 0 0 0 ENSG00000064195|ENST00000434704|DLX3 ENSG00000064195|ENST00000434704|DLX3 ENSG00000064195|ENST00000434704|DLX3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 61.223 1 61.223 60.723 61.723 0 0 0 0 0.19638 1 11746 11746 0.073264 0 1 34274 1330 23046 23061 33730 33730 0.00354693631857117 PPLQLVRCLDR 11 Unmodified _PPLQLVRCLDR_ 0 0 0 REV__BRF2|p.P374Lfs*16|1|0.2|ENSG00000104221|chr8:37844629-37844629|G/-|frameshift_variant REV__BRF2|p.P374Lfs*16|1|0.2|ENSG00000104221|chr8:37844629-37844629|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2212219238281 3 437.251818 1308.73363 NaN NaN NaN NaN NaN NaN NaN 109.84 1 105.66 105.16 106.16 -4.1826 0 0 0 0.23211 1 21137 21137 6.6235 3.0364 1 + 34275 13208 23047 23062 33731 33731 0.09160785745029898 PPLRSLLFC 9 Unmodified _PPLRSLLFC_ 0 0 0 REV__ENST00000252674.8_2_19:6210599-6210812:-|nuORF REV__ENST00000252674.8_2_19:6210599-6210812:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.2120666503906 3 349.200284 1044.57902 NaN NaN NaN NaN NaN NaN NaN 78.658 1 74.853 74.353 75.353 -3.8048 0 0 0 0.23508 1 14919 14919 1.1933 0 1 + 34276 20113 23048 23063 33732 33732 0.0585158133051209 PPLSLYSGEQ 10 Unmodified _PPLSLYSGEQ_ 0 0 0 ENST00000439895.1_1_2:39037654-39037882:-|nuORF ENST00000439895.1_1_2:39037654-39037882:-|nuORF ENST00000439895.1_1_2:39037654-39037882:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.780029296875 2 545.774396 1089.53424 0.26064 0.00014225 -0.0988 -5.3923E-05 0.16184 8.8328E-05 545.7742667493426 89.871 1.0853 86.094 85.592 86.677 -3.7779 101 30 5 0 0 0 0.43819 1 17206 17206 0.84494 0 1 33541000 34277 9878 23049 23064 33733 33733 -0.006945710018726459 PPLSSVFSEQ 10 Unmodified _PPLSSVFSEQ_ 0 0 0 ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant;ENSG00000171467|ENST00000361428|ZNF318 ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7802124023438 2 545.774396 1089.53424 0.13102 7.1505E-05 0.077682 4.2397E-05 0.2087 0.0001139 545.7743574860226 89.926 1.0349 86.066 85.616 86.65 -3.8595 93 28 5 0 0 0 0.43819 1 17568 17568 0.84494 0 1 33816000 34278 6145 23050 23065 33734 33734 -0.006945710018499085 PPLTPQLY 8 Unmodified _PPLTPQLY_ 0 0 0 REV__ENSG00000107779|ENST00000372037|BMPR1A REV__ENSG00000107779|ENST00000372037|BMPR1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1651306152344 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 32.825 1 30.619 30.119 31.119 -2.2066 0 0 0 0.21486 1 5700 5700 4.3292 0 1 + 34279 15091 23051 23066 33735 33735 0.039915705285807235 PPLVIKKG 8 Unmodified _PPLVIKKG_ 0 0 0 tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1 tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1 tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 426.272216796875 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 26.56 1 24.778 24.278 25.278 -1.7821 0 0 0 0.21486 1 4693 4693 0.79363 0 1 34280 26138 23052 23067 33736 33736 0.13276457524818852 PPLVIKKG 8 Unmodified _PPLVIKKG_ 0 0 0 tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1 tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1 tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.2176513671875 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 38.262 1 35.82 35.32 36.32 -2.4419 0 0 0 0.2396 1 6804 6804 0.62683 0 1 34281 26138 23052 23067 33737 33737 0.13276457524818852 PPLVPGRNE 9 Unmodified _PPLVPGRNE_ 0 0 0 REV__ENST00000472348.1_1_7:100204024-100205723:+|nuORF REV__ENST00000472348.1_1_7:100204024-100205723:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25579833984375 2 489.771991 977.529429 0.1034 5.0642E-05 0.28984 0.00014195 0.39323 0.0001926 489.7721615535647 16.351 0.27538 16.351 16.129 16.405 0 11 7 2 0 0 0 0.85111 1 2535 2535 3.5965 2.1146 1 311710 + 34282 15043 23053 23068 33738 33738 0.03976589646049433 PPLVPLLV 8 Unmodified _PPLVPLLV_ 0 0 0 ENST00000417856.5_1_11:66034501-66034906:+|nuORF ENST00000417856.5_1_11:66034501-66034906:+|nuORF ENST00000417856.5_1_11:66034501-66034906:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24517822265625 2 424.286214 846.557876 -0.35372 -0.00015008 0.17699 7.5094E-05 -0.17673 -7.4983E-05 424.28654125357514 55.177 0.75656 52.294 51.94 52.696 -2.8837 46 21 3 0 0 0 8448 1 10601 10601 0.30703 0 1 6769700 34283 9634 23054 23069 33739 33739 0.1284593929328821 PPMEVLSR 8 Unmodified _PPMEVLSR_ 0 0 0 REV__ENST00000511433.1_1_5:31908585-31908654:+|nuORF REV__ENST00000511433.1_1_5:31908585-31908654:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1699523925781 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 32.441 1 32.441 31.941 32.941 0 0 0 0 0.21486 1 5892 5892 3.5965 1.7523 1 + 34284 22550 23055 23070 33740 33740 0.018144425083619353 PPMPKPLSPL 10 Unmodified _PPMPKPLSPL_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21337890625 3 359.543939 1075.60999 0.64472 0.00023181 1.2896 0.00046368 1.9344 0.00069549 359.5443722367293 27.587 0.41716 25.805 25.56 25.977 -1.7821 28 11 4 0 0 0 0.72179 1 4914 4914 8.9762 1.0308 1 2834100 34285 5330 23056 23071 33741 33741 0.0752073464473142 PPMPKPLSPL 10 Unmodified _PPMPKPLSPL_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.543939 1075.60999 0.21021 7.558E-05 1.0374 0.00037298 1.2476 0.00044856 359.5441274294634 27.315 0.4208 25.56 25.443 25.864 -1.7552 -0.10796 -0.00061815 NaN 8.9762 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3247600 34286 5330 23056 23071 0.0752073464473142 PPMPKPLSPL 10 Unmodified _PPMPKPLSPL_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 359.543939 1075.60999 -0.48565 -0.00017461 2.1375 0.00076854 1.6519 0.00059393 359.5446387531638 27.635 0.49843 25.639 25.396 25.894 -1.9962 -0.029001 0.00056854 NaN 8.9762 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2596200 34287 5330 23056 23071 0.0752073464473142 PPMTELLK 8 Unmodified _PPMTELLK_ 0 0 0 TNPO2|p.L478P|1|0.43|ENSG00000105576|chr19:12706633-12706633|A/G|missense_variant TNPO2|p.L478P|1|0.43|ENSG00000105576|chr19:12706633-12706633|A/G|missense_variant TNPO2|p.L478P|1|0.43|ENSG00000105576|chr19:12706633-12706633|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16961669921875 3 310.177256 927.50994 NaN NaN NaN NaN NaN NaN NaN 73.027 1 69.716 69.216 70.216 -3.3107 0 0 0 0.21486 1 14235 14235 3.9444 0 1 34288 25866 23057 23072 33742 33742 0.04328497310939383 PPMTLAVLE 9 Unmodified _PPMTLAVLE_ 0 0 0 REV__ENST00000320895.9_1_5:1318250-1318400:-|nuORF REV__ENST00000320895.9_1_5:1318250-1318400:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1393127441406 3 324.180778 969.520504 NaN NaN NaN NaN NaN NaN NaN 61.074 1 58.141 57.641 58.641 -2.9333 0 0 0 0.23508 1 11764 11764 2.9952 0 1 + 34289 20547 23058 23073 33743 33743 0.034524799653581795 PPNDGRKVRL 10 Unmodified _PPNDGRKVRL_ 0 0 0 ENST00000342232.4_1_8:75233190-75233559:-|nuORF ENST00000342232.4_1_8:75233190-75233559:-|nuORF ENST00000342232.4_1_8:75233190-75233559:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3374633789062 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 33.291 1 30.974 30.474 31.474 -2.3175 0 0 0 0.22588 1 6085 6085 9.3831 3.6227 1 34290 8861 23059 23074 33744 33744 0.08778730240078403 PPNYCFHC 8 Unmodified _PPNYCFHC_ 0 0 0 nc|ENSG00000204644|Q9NU63|ZFP57;ZFP57|p.R423Gfs*10|1|0.22|ENSG00000204644|chr6:29672593-29672593|G/-|frameshift_variant;nc|ENSG00000204644|Q9NU63-2|ZFP57;ENSG00000204644|ENST00000376883|ZFP57 nc|ENSG00000204644|Q9NU63|ZFP57 nc|ENSG00000204644|Q9NU63|ZFP57 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 327.996337890625 3 327.463291 979.368043 -0.50063 -0.00016394 1.0969 0.0003592 0.59628 0.00019526 327.46378718236474 18.634 0.28511 18.634 18.402 18.687 0 13 7 2 0 0 0 1.028 1 2969 2969 0 0 1 741490 34291 7602 23060 23075 33745 33745 -0.12246618983056123 PPPAPAPTDG 10 Unmodified _PPPAPAPTDG_ 0 0 0 ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2314147949219 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 84.719 1 80.809 80.309 81.309 -3.9093 0 0 0 0.1553 1 16106 16106 36.044 10.645 1 34292 6614 23061 23076 33746 33746 -0.017787808905723068 PPPDMTSFPY 10 Unmodified _PPPDMTSFPY_ 0 0 0 nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;ENSG00000165246|ENST00000684976|NLGN4Y nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3262329101562 2 576.257525 1150.5005 NaN NaN NaN NaN NaN NaN NaN 136.73 1 131.81 131.31 132.31 -4.9216 0 0 0 0.22588 1 26280 26280 4.3292 0 1 34293 4676 23062 23077 33747 33747 -0.06873315765278676 PPPEECLQL 9 Unmodified _PPPEECLQL_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000576862.5_1_17:5290923-5298221:-|nuORF;ENST00000575976.1_1_17:5290923-5291292:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.166748046875 3 342.503921 1024.48993 -0.18723 -6.4125E-05 1.2327 0.00042221 1.0455 0.00035809 342.5040733801375 109.55 1.4714 105.1 104.53 106 -4.4518 86 41 3 0 0 0 0.5428 1 21061 21061 4.897 1.0207 1 1615000 34294 2483 23063 23078 33748 33748 -0.021332984196760663 PPPEECLQL 9 Unmodified _PPPEECLQL_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000576862.5_1_17:5290923-5298221:-|nuORF;ENST00000575976.1_1_17:5290923-5291292:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 342.503921 1024.48993 -0.70955 -0.00024302 2.0096 0.00068828 1.3 0.00044526 342.50424128711353 109.64 1.1812 105.26 104.57 105.75 -4.3776 0.11721 0.00056329 NaN 4.897 77 33 3 NaN NaN NaN NaN 0 NaN NaN 0 1270300 34295 2483 23063 23078 -0.021332984196760663 PPPEECLQL 9 Unmodified _PPPEECLQL_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000576862.5_1_17:5290923-5298221:-|nuORF;ENST00000575976.1_1_17:5290923-5291292:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.503921 1024.48993 -0.029119 -9.9733E-06 1.2765 0.00043719 1.2473 0.00042722 342.5040683957609 109.26 1.0606 105.08 104.56 105.62 -4.1826 -0.068652 -0.00018998 NaN 4.897 58 29 3 NaN NaN NaN NaN 0 NaN NaN 0 2014900 34296 2483 23063 23078 -0.021332984196760663 PPPEHPRV 8 Unmodified _PPPEHPRV_ 0 0 0 REV__ENSG00000112290|ENST00000392589|WASF1 REV__ENSG00000112290|ENST00000392589|WASF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1723937988281 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 176.04 1 171.17 170.67 171.67 -4.8739 0 0 0 0.21486 1 35010 35010 1.6526 0.87609 1 + 34297 15291 23064 23079 33749 33749 0.026003378201380656 PPPEKHLGIY 10 Unmodified _PPPEKHLGIY_ 0 0 0 ENST00000541602.5_1_11:113934022-114057819:+|nuORF;ZBTB16|p.G496Wfs*27|1|0.28|ENSG00000109906|chr11:114242197-114242198|-/T|frameshift_variant;ENSG00000109906|ENST00000335953|ZBTB16 ENST00000541602.5_1_11:113934022-114057819:+|nuORF ENST00000541602.5_1_11:113934022-114057819:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3359985351562 2 575.816399 1149.61824 0.09212 5.3044E-05 -1.3161 -0.00075782 -1.224 -0.00070477 575.813871107965 148.45 0.31549 143.74 143.51 143.83 -4.7095 9 8 2 0 0 0 0.68961 1 29479 29479 12.241 0 1 1394300 34298 11079 23065 23080 33750 33750 0.04942004885697315 PPPEVVYK 8 Unmodified _PPPEVVYK_ 0 0 0 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 44.164 1 44.164 43.664 44.664 0 0 0 0 0.21323 1 8280 8280 10.824 3.5347 1 34299 5326 23066 23081 33751 33751 0.03991570528569355 PPPEVVYK 8 Unmodified _PPPEVVYK_ 0 0 0 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700744628906 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 45.521 1 45.521 45.021 46.021 0 0 0 0 0.21486 1 8559 8559 3.5965 1.7523 1 34300 5326 23066 23081 33752 33752 0.03991570528569355 PPPEVVYK 8 Unmodified _PPPEVVYK_ 0 0 0 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1710205078125 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 48.863 1 45.994 45.494 46.494 -2.869 0 0 0 0.21486 1 9250 9250 3.9444 0 1 34301 5326 23066 23081 33753 33753 0.03991570528569355 PPPEVVYK 8 Unmodified _PPPEVVYK_ 0 0 0 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1701965332031 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 41.969 1 39.318 38.818 39.818 -2.651 0 0 0 0.21486 1 7546 7546 6.7232 2.7788 1 34302 5326 23066 23081 33754 33754 0.03991570528569355 PPPEVVYK 8 Unmodified _PPPEVVYK_ 0 0 0 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.171875 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 73.257 1 69.581 69.081 70.081 -3.6764 0 0 0 0.21323 1 13844 13844 10.824 3.5347 1 34303 5326 23066 23081 33755 33755 0.03991570528569355 PPPEVVYK 8 Unmodified _PPPEVVYK_ 0 0 0 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2306823730469 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 48.755 1 45.748 45.248 46.248 -3.0068 0 0 0 0.21486 1 8927 8927 3.9444 2.1002 1 34304 5326 23066 23081 33756 33756 0.03991570528569355 PPPEVVYK 8 Unmodified _PPPEVVYK_ 0 0 0 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.222412109375 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 48.892 1 45.885 45.385 46.385 -3.0068 0 0 0 0.21486 1 8957 8957 3.9444 2.1002 1 34305 5326 23066 23081 33757 33757 0.03991570528569355 PPPEVVYK 8 Unmodified _PPPEVVYK_ 0 0 0 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1678466796875 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 50.917 1 47.865 47.365 48.365 -3.0517 0 0 0 0.21486 1 9368 9368 6.7232 2.7788 1 34306 5326 23066 23081 33758 33758 0.03991570528569355 PPPEVVYK 8 Unmodified _PPPEVVYK_ 0 0 0 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.221923828125 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 61.964 1 58.724 58.224 59.224 -3.2395 0 0 0 0.21486 1 11609 11609 3.5965 1.7523 1 34307 5326 23066 23081 33759 33759 0.03991570528569355 PPPGACGS 8 Unmodified _PPPGACGS_ 0 0 0 HCN4|p.G1124Vfs*57|1|0.26|ENSG00000138622|chr15:73322722-73322722|C/-|frameshift_variant;HCN4|p.P998Hfs*20|1|0.32|ENSG00000138622|chr15:73323100-73323100|G/-|frameshift_variant;HCN4|p.A1014Lfs*4|2|0.36|ENSG00000138622|chr15:73323053-73323053|C/-|frameshift_variant;HCN4|p.P1179Lfs*2|1|0.22|ENSG00000138622|chr15:73322562-73322562|C/-|frameshift_variant;HCN4|p.P1164Lfs*17|1|0.17|ENSG00000138622|chr15:73322602-73322602|G/-|frameshift_variant;ENSG00000138622|ENST00000261917|HCN4 HCN4|p.G1124Vfs*57|1|0.26|ENSG00000138622|chr15:73322722-73322722|C/-|frameshift_variant HCN4|p.G1124Vfs*57|1|0.26|ENSG00000138622|chr15:73322722-73322722|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.1999816894531 2 343.152332 684.29011 NaN NaN NaN NaN NaN NaN NaN 26.939 1 25.157 24.657 25.657 -1.7821 0 0 0 0.2396 1 4771 4771 0.12286 0 1 34308 11873 23067 23082 33760 33760 -0.0646630857678474 PPPGKKKR 8 Unmodified _PPPGKKKR_ 0 0 0 REV__ENSG00000137936|ENST00000260502|BCAR3 REV__ENSG00000137936|ENST00000260502|BCAR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 303.1986999511719 3 303.199383 906.57632 NaN NaN NaN NaN NaN NaN NaN 98.875 1 94.742 94.242 95.242 -4.1326 0 0 0 0.21486 1 19417 19417 0.45834 0 1 + 34309 16423 23068 23083 33761 33761 0.11929493987838669 PPPGKKKR 8 Unmodified _PPPGKKKR_ 0 0 0 REV__ENSG00000137936|ENST00000260502|BCAR3 REV__ENSG00000137936|ENST00000260502|BCAR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 303.19720458984375 3 303.199383 906.57632 NaN NaN NaN NaN NaN NaN NaN 104.87 1 100.65 100.15 101.15 -4.2183 0 0 0 0.21486 1 20632 20632 0.45834 0 1 + 34310 16423 23068 23083 33762 33762 0.11929493987838669 PPPGRGGPPP 10 Unmodified _PPPGRGGPPP_ 0 0 0 ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17010498046875 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 45.842 1 45.842 45.342 46.342 0 0 0 0 0.22588 1 8625 8625 4.1895 0 1 34311 1109 23069 23084 33763 33763 0.026003378201380656 PPPGRGGPPP 10 Unmodified _PPPGRGGPPP_ 0 0 0 ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1701965332031 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 66.046 1 66.046 65.546 66.546 0 0 0 0 0.22588 1 12749 12749 2.086 0 1 34312 1109 23069 23084 33764 33764 0.026003378201380656 PPPHMLLSFI 10 Unmodified _PPPHMLLSFI_ 0 0 0 REV__ENST00000595173.1_1_19:51379666-51379828:+|nuORF REV__ENST00000595173.1_1_19:51379666-51379828:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3154296875 2 576.31772 1150.62089 NaN NaN NaN NaN NaN NaN NaN 131.24 1 126.41 125.91 126.91 -4.8355 0 0 0 0.22588 1 25203 25203 10.074 0.52995 1 + 34313 23373 23070 23085 33765 33765 0.05160137019015565 PPPHPCFGAR 10 Unmodified _PPPHPCFGAR_ 0 0 0 REV__ENST00000419007.5_1_3:50311657-50311978:+|nuORF REV__ENST00000419007.5_1_3:50311657-50311978:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016296386719 3 360.179883 1077.51782 NaN NaN NaN NaN NaN NaN NaN 32.882 1 30.735 30.235 31.235 -2.1468 0 0 0 0.22588 1 5720 5720 1.7423 0.54893 1 + 34314 21492 23071 23086 33766 33766 -0.017839306489349838 PPPKYLVFY 9 Unmodified _PPPKYLVFY_ 0 0 0 REV__ASCC2|p.R715Efs*40|1|0.04|ENSG00000100325|chr22:29789144-29789144|G/-|frameshift_variant REV__ASCC2|p.R715Efs*40|1|0.04|ENSG00000100325|chr22:29789144-29789144|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2112121582031 3 375.211066 1122.61137 NaN NaN NaN NaN NaN NaN NaN 18.731 1 17.42 16.92 17.92 -1.3109 0 0 0 0.23508 1 3057 3057 2.9952 0.26005 1 + 34315 13130 23072 23087 33767 33767 0.05496692005135628 PPPLPQNLLY 10 Unmodified _PPPLPQNLLY_ 0 0 0 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3247680664062 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 116.12 1 116.12 115.62 116.62 0 0 0 0 0.22588 1 22863 22863 6.7232 0.51738 1 34316 1799 23073 23088 33768 33768 0.06935175545504535 PPPLPQNLLY 10 Unmodified _PPPLPQNLLY_ 0 0 0 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3258666992188 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 123.79 1 123.79 123.29 124.29 0 0 0 0 0.22588 1 24402 24402 7.2892 0.18751 1 34317 1799 23073 23088 33769 33769 0.06935175545504535 PPPLPQNLLY 10 Unmodified _PPPLPQNLLY_ 0 0 0 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3185424804688 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 120.94 1 116.42 115.92 116.92 -4.5221 0 0 0 0.22588 1 23841 23841 10.824 0.75 1 34318 1799 23073 23088 33770 33770 0.06935175545504535 PPPLPQNLLY 10 Unmodified _PPPLPQNLLY_ 0 0 0 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3169555664062 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 127.83 1 123.21 122.71 123.71 -4.6172 0 0 0 0.22588 1 25208 25208 10.824 0.75 1 34319 1799 23073 23088 33771 33771 0.06935175545504535 PPPLPQNLLY 10 Unmodified _PPPLPQNLLY_ 0 0 0 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3380126953125 2 576.326599 1150.63865 0.44096 0.00025414 -1.3324 -0.0007679 -0.89144 -0.00051376 576.3248744223666 118.19 0.10884 113.78 113.71 113.82 -4.4088 4 2 2 0 0 0 0.71097 1 22737 22737 10.074 0.6908 1 1120200 34320 1799 23073 23088 33772 33772 0.06935175545504535 PPPLSTQPILS 11 Unmodified _PPPLSTQPILS_ 0 0 0 ENST00000549336.5_1_12:48238330-48238510:-|nuORF ENST00000549336.5_1_12:48238330-48238510:-|nuORF ENST00000549336.5_1_12:48238330-48238510:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3323364257812 2 575.329339 1148.64412 0.29019 0.00016695 1.255 0.00072204 1.5452 0.00088899 575.3299173716695 129.92 1.1406 129.92 129.2 130.34 0 70 32 3 0 0 0 0.70375 1 25735 25735 11.495 0 1 10763000 34321 11163 23074 23089 33773 33773 0.07574854337326542 PPPNCPLVVSE 11 Unmodified _PPPNCPLVVSE_ 0 0 0 REV__nc|ENSG00000198910|P32004-3|L1CAM REV__nc|ENSG00000198910|P32004-3|L1CAM MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.320556640625 2 576.291899 1150.56925 NaN NaN NaN NaN NaN NaN NaN 152.59 1 152.59 152.09 153.09 0 0 0 0 0.23324 1 30567 30567 5.7319 0 1 + 34322 19480 23075 23090 33774 33774 -1.651465572649613E-05 PPPPAPPPP 9 Unmodified _PPPPAPPPP_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant;BOD1L1|p.K236Nfs*65|1|0.29|ENSG00000038219|chr4:13614662-13614662|T/-|frameshift_variant;BOD1L1|p.N316Kfs*2|1|0.48|ENSG00000038219|chr4:13614422-13614423|-/T|frameshift_variant;BOD1L1|p.V570*|4|0.23|ENSG00000038219|chr4:13608565-13608565|T/-|frameshift_variant;BOD1L1|p.V667Gfs*6|1|0.06|ENSG00000038219|chr4:13604900-13604901|-/C|frameshift_variant;KMT2B|p.R1911Dfs*23|1|0.18|ENSG00000272333|chr19:35732274-35732274|C/-|frameshift_variant;KMT2B|p.G2123Vfs*30|1|0.34|ENSG00000272333|chr19:35732913-35732913|G/-|frameshift_variant;KMT2B|p.P1821Hfs*74|1|0.36|ENSG00000272333|chr19:35731927-35731927|C/-|frameshift_variant;KMT2B|p.D1589Gfs*89|1|0.28|ENSG00000272333|chr19:35729058-35729059|-/G|frameshift_variant;KMT2B|p.L2136Pfs*17|1|0.27|ENSG00000272333|chr19:35732956-35732956|T/-|frameshift_variant;KMT2B|p.P1201Rfs*154|1|0.37|ENSG00000272333|chr19:35725288-35725288|C/-|frameshift_variant;KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant;KMT2B|p.A1049Gfs*39|1|0.32|ENSG00000272333|chr19:35723812-35723813|-/G|frameshift_variant;KMT2B|p.G934Efs*52|1|0.1|ENSG00000272333|chr19:35723069-35723069|G/-|frameshift_variant;KMT2B|p.G1879Vfs*16|5|0.4|ENSG00000272333|chr19:35732101-35732101|G/-|frameshift_variant;KMT2B|p.G1199Afs*156|1|0.16|ENSG00000272333|chr19:35725283-35725283|G/-|frameshift_variant;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-2|WIPF1;nc|ENSG00000115935|O43516-4|WIPF1;ENST00000480400.1_1_2:175446032-175450310:-|nuORF;nc|ENSG00000115935|O43516-3|WIPF1;WIPF1|p.P221Lfs*20|1|0.33|ENSG00000115935|chr2:174572143-174572143|G/-|frameshift_variant;ENST00000360947.7_1_14:21561312-21566652:-|nuORF;LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;ENSG00000271601|ENST00000604000|LIX1L;ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1;REV__ENSG00000038219|ENST00000040738|BOD1L1;LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B;REV__BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant;REV__LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 433.8890075683594 2 433.742171 865.469789 0.43675 0.00018944 -0.48061 -0.00020846 -0.043859 -1.9024E-05 433.7418798796226 43.975 6.6327 43.975 42.422 49.055 0 484 189 3 0 0 0 0.44106 1 9114 9114 28.173 0 1 12377000 34323 1180;14038;13201;19919;8003;8004;19917 23076 23091 33775 33775 0.031673187026513006 PPPPAPPPP 9 Unmodified _PPPPAPPPP_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant;BOD1L1|p.K236Nfs*65|1|0.29|ENSG00000038219|chr4:13614662-13614662|T/-|frameshift_variant;BOD1L1|p.N316Kfs*2|1|0.48|ENSG00000038219|chr4:13614422-13614423|-/T|frameshift_variant;BOD1L1|p.V570*|4|0.23|ENSG00000038219|chr4:13608565-13608565|T/-|frameshift_variant;BOD1L1|p.V667Gfs*6|1|0.06|ENSG00000038219|chr4:13604900-13604901|-/C|frameshift_variant;KMT2B|p.R1911Dfs*23|1|0.18|ENSG00000272333|chr19:35732274-35732274|C/-|frameshift_variant;KMT2B|p.G2123Vfs*30|1|0.34|ENSG00000272333|chr19:35732913-35732913|G/-|frameshift_variant;KMT2B|p.P1821Hfs*74|1|0.36|ENSG00000272333|chr19:35731927-35731927|C/-|frameshift_variant;KMT2B|p.D1589Gfs*89|1|0.28|ENSG00000272333|chr19:35729058-35729059|-/G|frameshift_variant;KMT2B|p.L2136Pfs*17|1|0.27|ENSG00000272333|chr19:35732956-35732956|T/-|frameshift_variant;KMT2B|p.P1201Rfs*154|1|0.37|ENSG00000272333|chr19:35725288-35725288|C/-|frameshift_variant;KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant;KMT2B|p.A1049Gfs*39|1|0.32|ENSG00000272333|chr19:35723812-35723813|-/G|frameshift_variant;KMT2B|p.G934Efs*52|1|0.1|ENSG00000272333|chr19:35723069-35723069|G/-|frameshift_variant;KMT2B|p.G1879Vfs*16|5|0.4|ENSG00000272333|chr19:35732101-35732101|G/-|frameshift_variant;KMT2B|p.G1199Afs*156|1|0.16|ENSG00000272333|chr19:35725283-35725283|G/-|frameshift_variant;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-2|WIPF1;nc|ENSG00000115935|O43516-4|WIPF1;ENST00000480400.1_1_2:175446032-175450310:-|nuORF;nc|ENSG00000115935|O43516-3|WIPF1;WIPF1|p.P221Lfs*20|1|0.33|ENSG00000115935|chr2:174572143-174572143|G/-|frameshift_variant;ENST00000360947.7_1_14:21561312-21566652:-|nuORF;LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;ENSG00000271601|ENST00000604000|LIX1L;ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1;REV__ENSG00000038219|ENST00000040738|BOD1L1;LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B;REV__BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant;REV__LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.88958740234375 2 433.742171 865.469789 -0.22418 -9.7236E-05 0.15791 6.8494E-05 -0.066264 -2.8741E-05 433.7421487578906 47.46 8.2295 44.591 42.833 51.062 -2.869 513 235 3 0 0 0 0.44106 1 9677 9677 36.466 8.2929 1 13660000 34324 1180;14038;13201;19919;8003;8004;19917 23076 23091 33776 33776 0.031673187026513006 PPPPAPPPP 9 Unmodified _PPPPAPPPP_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant;BOD1L1|p.K236Nfs*65|1|0.29|ENSG00000038219|chr4:13614662-13614662|T/-|frameshift_variant;BOD1L1|p.N316Kfs*2|1|0.48|ENSG00000038219|chr4:13614422-13614423|-/T|frameshift_variant;BOD1L1|p.V570*|4|0.23|ENSG00000038219|chr4:13608565-13608565|T/-|frameshift_variant;BOD1L1|p.V667Gfs*6|1|0.06|ENSG00000038219|chr4:13604900-13604901|-/C|frameshift_variant;KMT2B|p.R1911Dfs*23|1|0.18|ENSG00000272333|chr19:35732274-35732274|C/-|frameshift_variant;KMT2B|p.G2123Vfs*30|1|0.34|ENSG00000272333|chr19:35732913-35732913|G/-|frameshift_variant;KMT2B|p.P1821Hfs*74|1|0.36|ENSG00000272333|chr19:35731927-35731927|C/-|frameshift_variant;KMT2B|p.D1589Gfs*89|1|0.28|ENSG00000272333|chr19:35729058-35729059|-/G|frameshift_variant;KMT2B|p.L2136Pfs*17|1|0.27|ENSG00000272333|chr19:35732956-35732956|T/-|frameshift_variant;KMT2B|p.P1201Rfs*154|1|0.37|ENSG00000272333|chr19:35725288-35725288|C/-|frameshift_variant;KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant;KMT2B|p.A1049Gfs*39|1|0.32|ENSG00000272333|chr19:35723812-35723813|-/G|frameshift_variant;KMT2B|p.G934Efs*52|1|0.1|ENSG00000272333|chr19:35723069-35723069|G/-|frameshift_variant;KMT2B|p.G1879Vfs*16|5|0.4|ENSG00000272333|chr19:35732101-35732101|G/-|frameshift_variant;KMT2B|p.G1199Afs*156|1|0.16|ENSG00000272333|chr19:35725283-35725283|G/-|frameshift_variant;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-2|WIPF1;nc|ENSG00000115935|O43516-4|WIPF1;ENST00000480400.1_1_2:175446032-175450310:-|nuORF;nc|ENSG00000115935|O43516-3|WIPF1;WIPF1|p.P221Lfs*20|1|0.33|ENSG00000115935|chr2:174572143-174572143|G/-|frameshift_variant;ENST00000360947.7_1_14:21561312-21566652:-|nuORF;LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;ENSG00000271601|ENST00000604000|LIX1L;ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1;REV__ENSG00000038219|ENST00000040738|BOD1L1;LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B;REV__BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant;REV__LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 433.8892822265625 2 433.742171 865.469789 -0.28569 -0.00012392 0.28934 0.0001255 0.0036432 1.5802E-06 433.74221490014037 47.375 8.0235 44.425 42.809 50.833 -2.9499 561 231 4 0 0 0 0.44106 1 9406 9406 28.173 0 1 9776400 34325 1180;14038;13201;19919;8003;8004;19917 23076 23091 33777 33777 0.031673187026513006 PPPPAPPPP 9 Unmodified _PPPPAPPPP_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant;BOD1L1|p.K236Nfs*65|1|0.29|ENSG00000038219|chr4:13614662-13614662|T/-|frameshift_variant;BOD1L1|p.N316Kfs*2|1|0.48|ENSG00000038219|chr4:13614422-13614423|-/T|frameshift_variant;BOD1L1|p.V570*|4|0.23|ENSG00000038219|chr4:13608565-13608565|T/-|frameshift_variant;BOD1L1|p.V667Gfs*6|1|0.06|ENSG00000038219|chr4:13604900-13604901|-/C|frameshift_variant;KMT2B|p.R1911Dfs*23|1|0.18|ENSG00000272333|chr19:35732274-35732274|C/-|frameshift_variant;KMT2B|p.G2123Vfs*30|1|0.34|ENSG00000272333|chr19:35732913-35732913|G/-|frameshift_variant;KMT2B|p.P1821Hfs*74|1|0.36|ENSG00000272333|chr19:35731927-35731927|C/-|frameshift_variant;KMT2B|p.D1589Gfs*89|1|0.28|ENSG00000272333|chr19:35729058-35729059|-/G|frameshift_variant;KMT2B|p.L2136Pfs*17|1|0.27|ENSG00000272333|chr19:35732956-35732956|T/-|frameshift_variant;KMT2B|p.P1201Rfs*154|1|0.37|ENSG00000272333|chr19:35725288-35725288|C/-|frameshift_variant;KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant;KMT2B|p.A1049Gfs*39|1|0.32|ENSG00000272333|chr19:35723812-35723813|-/G|frameshift_variant;KMT2B|p.G934Efs*52|1|0.1|ENSG00000272333|chr19:35723069-35723069|G/-|frameshift_variant;KMT2B|p.G1879Vfs*16|5|0.4|ENSG00000272333|chr19:35732101-35732101|G/-|frameshift_variant;KMT2B|p.G1199Afs*156|1|0.16|ENSG00000272333|chr19:35725283-35725283|G/-|frameshift_variant;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-2|WIPF1;nc|ENSG00000115935|O43516-4|WIPF1;ENST00000480400.1_1_2:175446032-175450310:-|nuORF;nc|ENSG00000115935|O43516-3|WIPF1;WIPF1|p.P221Lfs*20|1|0.33|ENSG00000115935|chr2:174572143-174572143|G/-|frameshift_variant;ENST00000360947.7_1_14:21561312-21566652:-|nuORF;LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;ENSG00000271601|ENST00000604000|LIX1L;ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1;REV__ENSG00000038219|ENST00000040738|BOD1L1;LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B;REV__BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant;REV__LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 433.742171 865.469789 -0.021886 -9.4929E-06 -0.035905 -1.5574E-05 -0.057791 -2.5067E-05 433.74206454272877 47.595 7.8953 44.653 42.857 50.752 -2.9421 0.096315 -0.00016454 NaN 36.466 529 226 3 NaN NaN NaN NaN 0 NaN NaN 0 11998000 34326 1180;14038;13201;19919;8003;8004;19917 23076 23091 0.031673187026513006 PPPPATAA 8 Unmodified _PPPPATAA_ 0 0 0 ENSG00000160801|ENST00000449590|PTH1R;ENSG00000010017|ENST00000011619|RANBP9 ENSG00000160801|ENST00000449590|PTH1R ENSG00000160801|ENST00000449590|PTH1R MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.1957092285156 2 361.197596 720.38064 NaN NaN NaN NaN NaN NaN NaN 45.204 1 42.337 41.837 42.837 -2.8666 0 0 0 0.23711 1 8201 8201 0.12286 0 1 34327 1058 23077 23092 33778 33778 0.009264837431146589 PPPPATGL 8 Unmodified _PPPPATGL_ 0 0 0 REV__ENSG00000167612|ENST00000301190|ANKRD33 REV__ENSG00000167612|ENST00000301190|ANKRD33 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21234130859375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 43.327 1 40.608 40.108 41.108 -2.7191 0 0 0 0.20568 1 8120 8120 20.871 0 1 + 34328 17944 23078 23093 33779 33779 0.027670567772247523 PPPPPHRDPD 10 Unmodified _PPPPPHRDPD_ 0 0 0 REV__ENST00000274811.8_1_5:175959512-175964241:-|nuORF REV__ENST00000274811.8_1_5:175959512-175964241:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21466064453125 3 375.520962 1123.54106 -0.3755 -0.00014101 -0.12233 -4.5937E-05 -0.49783 -0.00018694 375.85507895358876 17.907 0.32187 16.597 16.439 16.761 -1.3109 11 8 2 0 0 0 0.91149 1 2870 2870 3.8763 3.7684 1 174780 + 34329 20286 23079 23094 33780 33780 -0.01577213330642735 PPPPPPVLPLQ 11 Unmodified _PPPPPPVLPLQ_ 0 0 0 RIN3|p.V790Cfs*21|1|0.4|ENSG00000100599|chr14:92676507-92676507|G/-|frameshift_variant;nc|ENSG00000100599|Q8TB24-4|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3 RIN3|p.V790Cfs*21|1|0.4|ENSG00000100599|chr14:92676507-92676507|G/-|frameshift_variant RIN3|p.V790Cfs*21|1|0.4|ENSG00000100599|chr14:92676507-92676507|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3202514648438 2 576.344792 1150.67503 NaN NaN NaN NaN NaN NaN NaN 151.26 1 146.51 146.01 147.01 -4.7523 0 0 0 0.23264 1 30049 30049 6.2058 1.3088 1 34330 1995 23080 23095 33781 33781 0.1057205244223951 PPPPPTEPP 9 Unmodified _PPPPPTEPP_ 0 0 0 REV__ENST00000360982.2_1_2:183902874-183903513:-|nuORF REV__ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1714782714844 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 59.473 1 56.55 56.05 57.05 -2.9234 0 0 0 0.23508 1 11436 11436 2.9952 0 1 + 34331 20875 23081 23096 33782 33782 0.00354693631857117 PPPPPTEPP 9 Unmodified _PPPPPTEPP_ 0 0 0 REV__ENST00000360982.2_1_2:183902874-183903513:-|nuORF REV__ENST00000360982.2_1_2:183902874-183903513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1711730957031 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 59.449 1 56.225 55.725 56.725 -3.2237 0 0 0 0.23508 1 11105 11105 2.9952 0 1 + 34332 20875 23081 23096 33783 33783 0.00354693631857117 PPPPRVGG 8 Unmodified _PPPPRVGG_ 0 0 0 ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant;ITGA5|p.L399Wfs*26|2|0.4|ENSG00000161638|chr12:54405196-54405196|G/-|frameshift_variant;ENSG00000161638|ENST00000293379|ITGA5 ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 389.2198181152344 2 388.724313 775.434072 -0.24234 -9.4204E-05 0.65439 0.00025438 0.41205 0.00016017 388.7244497842887 84.424 1.5132 80.76 80.162 81.676 -3.6641 63 43 2 0 0 0 8448 1 16542 16542 29.841 28.098 1 5122700 34333 5293 23082 23097 33784 33784 0.03737281245673785 PPPPRVGG 8 Unmodified _PPPPRVGG_ 0 0 0 ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant;ITGA5|p.L399Wfs*26|2|0.4|ENSG00000161638|chr12:54405196-54405196|G/-|frameshift_variant;ENSG00000161638|ENST00000293379|ITGA5 ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 388.724313 775.434072 0.25957 0.0001009 0.18607 7.233E-05 0.44564 0.00017323 388.72427517980657 80.805 1.3663 80.805 80.349 81.716 0 0.030079 -0.00025434 NaN 29.841 57 38 2 NaN NaN NaN NaN 0 NaN NaN 0 3005700 34334 5293 23082 23097 0.03737281245673785 PPPPRVGG 8 Unmodified _PPPPRVGG_ 0 0 0 ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant;ITGA5|p.L399Wfs*26|2|0.4|ENSG00000161638|chr12:54405196-54405196|G/-|frameshift_variant;ENSG00000161638|ENST00000293379|ITGA5 ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 388.724313 775.434072 0.1773 6.892E-05 0.17324 6.7344E-05 0.35054 0.00013626 388.7242764160728 84.625 1.5276 80.716 80.318 81.846 -3.9093 -0.059442 -0.00026431 NaN 29.841 77 43 3 NaN NaN NaN NaN 0 NaN NaN 0 4736400 34335 5293 23082 23097 0.03737281245673785 PPPPRVGG 8 Unmodified _PPPPRVGG_ 0 0 0 ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant;ITGA5|p.L399Wfs*26|2|0.4|ENSG00000161638|chr12:54405196-54405196|G/-|frameshift_variant;ENSG00000161638|ENST00000293379|ITGA5 ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 388.724313 775.434072 -0.64788 -0.00025185 1.0186 0.00039596 0.37073 0.00014411 388.7245870942575 84.531 1.2901 80.819 80.274 81.564 -3.7117 0.044464 0.00039291 NaN 29.841 63 36 2 NaN NaN NaN NaN 0 NaN NaN 0 3364600 34336 5293 23082 23097 0.03737281245673785 PPPPSGRTDL 10 Unmodified _PPPPSGRTDL_ 0 0 0 IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.4902648925781 3 346.185579 1035.53491 NaN NaN NaN NaN NaN NaN NaN 84.18 1 80.516 80.016 81.016 -3.6641 0 0 0 2.8426 1 16457 16457 0.51642 0.26494 1 34337 11940 23083 23098 33785 33785 0.018562684378593985 PPPPVTLE 8 Unmodified _PPPPVTLE_ 0 0 0 KIAA1522|p.P976Hfs*70|2|0.39|ENSG00000162522|chr1:32772278-32772278|C/-|frameshift_variant KIAA1522|p.P976Hfs*70|2|0.39|ENSG00000162522|chr1:32772278-32772278|C/-|frameshift_variant KIAA1522|p.P976Hfs*70|2|0.39|ENSG00000162522|chr1:32772278-32772278|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2403564453125 2 425.239461 848.46437 NaN NaN NaN NaN NaN NaN NaN 165.27 1 165.27 164.77 165.77 0 0 0 0 0.21486 1 33519 33519 5.7604 0 1 34338 11994 23084 23099 33786 33786 0.03407595120188489 PPPRGRPSAG 10 Unmodified _PPPRGRPSAG_ 0 0 0 REV__ENST00000551727.5_1_12:104531302-104531635:-|nuORF REV__ENST00000551727.5_1_12:104531302-104531635:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 331.19390869140625 3 331.185914 990.535912 NaN NaN NaN NaN NaN NaN NaN 71.693 1 68.154 67.654 68.654 -3.5385 0 0 0 0.22588 1 13593 13593 1.9064 0.1641 1 + 34339 22937 23085 23100 33787 33787 0.040265275974206816 PPPRSPFQQPQ 11 Unmodified _PPPRSPFQQPQ_ 0 0 0 REV__ENSG00000168615|ENST00000487273|ADAM9 REV__ENSG00000168615|ENST00000487273|ADAM9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 639.8479614257812 2 639.833111 1277.65167 NaN NaN NaN NaN NaN NaN NaN 170.99 1 166.11 165.61 166.61 -4.873 0 0 0 0.23087 1 33868 33868 7.609 1.4032 1 + 34340 18039 23086 23101 33788 33788 0.023950066575935125 PPPSRTRRPS 10 Unmodified _PPPSRTRRPS_ 0 0 0 ENST00000391973.6_1_2:242254643-242255021:+|nuORF ENST00000391973.6_1_2:242254643-242255021:+|nuORF ENST00000391973.6_1_2:242254643-242255021:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3300170898438 2 575.825621 1149.63669 0.22418 0.00012909 2.0068 0.0011556 2.231 0.0012847 576.3282188814253 118.21 0.47667 113.71 113.42 113.9 -4.502 20 13 2 0 0 0 0.70381 1 23268 23268 10.8 0 1 10435000 34341 9363 23087 23102 33789 33789 0.06785559580271183 PPPTPLLPP 9 Unmodified _PPPTPLLPP_ 0 0 0 REV__nc|ENSG00000087495|Q96KR7-2|PHACTR3 REV__nc|ENSG00000087495|Q96KR7-2|PHACTR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649169921875 3 310.188261 927.542954 -1.9207 -0.00059577 -0.95636 -0.00029665 -2.877 -0.00089242 310.18787918429865 17.933 0.42501 16.418 16.253 16.678 -1.5148 16 11 2 0 0 0 0.61034 1 2630 2630 0.073264 0 1 299250 + 34342 14505 23088 23103 33790 33790 0.07628447425270224 PPPTPLLPP 9 Unmodified _PPPTPLLPP_ 0 0 0 REV__nc|ENSG00000087495|Q96KR7-2|PHACTR3 REV__nc|ENSG00000087495|Q96KR7-2|PHACTR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.23040771484375 3 310.188261 927.542954 NaN NaN NaN NaN NaN NaN NaN 45.055 1 42.308 41.808 42.808 -2.7475 0 0 0 0.23508 1 8169 8169 1.1933 0 1 + 34343 14505 23088 23103 33791 33791 0.07628447425270224 PPPTPPPPP 9 Unmodified _PPPTPPPPP_ 0 0 0 ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;ZFHX4|p.R2647Gfs*44|1|0.25|ENSG00000091656|chr8:76854854-76854854|A/-|frameshift_variant;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.D2246*|1|0.34|ENSG00000091656|chr8:76853650-76853651|-/T|frameshift_variant;ZFHX4|p.P2056Hfs*26|1|0.19|ENSG00000091656|chr8:76853081-76853084|CCTC/-|frameshift_variant;ZFHX4|p.I2143Nfs*7|1|0.31|ENSG00000091656|chr8:76853343-76853344|-/A|frameshift_variant;ZFHX4|p.P2057Hfs*26|2|0.17|ENSG00000091656|chr8:76853084-76853084|C/-|frameshift_variant;ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant;WIPF3|p.P325Rfs*49|1|0.42|ENSG00000122574|chr7:29884464-29884464|C/-|frameshift_variant;WIPF3|p.P298Lfs*76|1|0.4|ENSG00000122574|chr7:29884382-29884382|C/-|frameshift_variant;ENSG00000122574|ENST00000242140|WIPF3;ENST00000368219.1_1_1:156698226-156698472:-|nuORF ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;WIPF3|p.P325Rfs*49|1|0.42|ENSG00000122574|chr7:29884464-29884464|C/-|frameshift_variant;ENST00000368219.1_1_1:156698226-156698472:-|nuORF;REV__ENSG00000183654|ENST00000332432|MARCHF11 ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 448.3499755859375 2 448.747453 895.480354 -0.16917 -7.5916E-05 0.12797 5.7427E-05 -0.041202 -1.8489E-05 448.74748948099887 48.097 1.248 45.147 44.188 45.436 -2.9499 62 35 2 0 0 0 0.76082 1 8737 8737 8.5933 3.3626 1 1405700 34344 1815;3234;9092;18847 23089 23104 33792 33792 0.028433013570861476 PPPTPQQSPE 10 Unmodified _PPPTPQQSPE_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|299|3|anti-sense;L1PA3_dup1120|chr2:110351377-110353837:-|1.852683732690941|0.4358200479832063|2.09|470.0|134|3|anti-sense;L1PA3_dup1115|chr2:110017555-110020014:+|1.763195504976095|0.4680770941019235|1.91|454.0|142|3|anti-sense L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|299|3|anti-sense L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|299|3|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2705078125 2 539.264196 1076.51384 -0.67062 -0.00036164 0.47648 0.00025695 -0.19414 -0.00010469 539.2642986932159 21.196 0.69796 19.475 19.253 19.951 -1.7211 59 19 5 0 0 0 0.57502 1 3315 3315 18.146 0 1 17233000 34345 12043 23090 23105 33793 33793 -0.021357416616638147 PPPTPVRTSSI 11 Unmodified _PPPTPVRTSSI_ 0 0 0 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3242797851562 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 124.58 1 119.93 119.43 120.43 -4.6495 0 0 0 0.22595 1 23971 23971 11.495 2.1116 1 34346 7151 23091 23106 33794 33794 0.06533086051808823 PPPTPVRTSSI 11 Unmodified _PPPTPVRTSSI_ 0 0 0 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.316162109375 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 141.58 1 136.72 136.22 137.22 -4.8678 0 0 0 0.23151 1 27325 27325 7.1017 0.37856 1 34347 7151 23091 23106 33795 33795 0.06533086051808823 PPPVKKRK 8 Unmodified _PPPVKKRK_ 0 0 0 ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1 ENST00000419413.1_1_X:136523419-136523611:-|nuORF ENST00000419413.1_1_X:136523419-136523611:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.22247314453125 3 317.215033 948.62327 NaN NaN NaN NaN NaN NaN NaN 67.001 1 63.505 63.005 64.005 -3.4965 0 0 0 0.23899 1 12566 12566 1.3295 1.2067 1 34348 3994 23092 23107 33796 33796 0.1469035353898107 PPPVLWGY 8 Unmodified _PPPVLWGY_ 0 0 0 ENST00000367462.4_1_1:190446859-190447012:-|nuORF ENST00000367462.4_1_1:190446859-190447012:-|nuORF ENST00000367462.4_1_1:190446859-190447012:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16510009765625 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 34.999 1 34.999 34.499 35.499 0 0 0 0 0.21486 1 6416 6416 1.8442 0 1 34349 9067 23093 23108 33797 33797 0.018796052197103563 PPPVLWGY 8 Unmodified _PPPVLWGY_ 0 0 0 ENST00000367462.4_1_1:190446859-190447012:-|nuORF ENST00000367462.4_1_1:190446859-190447012:-|nuORF ENST00000367462.4_1_1:190446859-190447012:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.169921875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 35.06 1 35.06 34.56 35.56 0 0 0 0 0.21486 1 6429 6429 1.8442 0 1 34350 9067 23093 23108 33798 33798 0.018796052197103563 PPPVLWGY 8 Unmodified _PPPVLWGY_ 0 0 0 ENST00000367462.4_1_1:190446859-190447012:-|nuORF ENST00000367462.4_1_1:190446859-190447012:-|nuORF ENST00000367462.4_1_1:190446859-190447012:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1701965332031 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 55.439 1 52.302 51.802 52.802 -3.1377 0 0 0 0.21486 1 10292 10292 4.3292 1.334 1 34351 9067 23093 23108 33799 33799 0.018796052197103563 PPPYSAVTP 9 Unmodified _PPPYSAVTP_ 0 0 0 nc|ENSG00000172403|Q9UMS6-5|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 176.25 1 171.38 170.88 171.88 -4.8739 0 0 0 0.23508 1 35058 35058 1.0715 0 1 34352 6219 23094 23109 33800 33800 0.003546936318457483 PPQAPRAQTV 10 Unmodified _PPQAPRAQTV_ 0 0 0 REV__ENST00000591127.1_2_19:1230066-1234703:-|nuORF REV__ENST00000591127.1_2_19:1230066-1234703:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26953125 2 532.795998 1063.57744 -0.019167 -1.0212E-05 -0.32389 -0.00017257 -0.34306 -0.00018278 532.7956916004945 50.013 0.40197 47.006 46.74 47.142 -3.0068 26 11 3 0 0 0 0.65996 1 9149 9149 15.248 0 1 1653600 + 34353 23329 23095 23110 33801 33801 0.04819663566058807 PPQHDGLR 8 Unmodified _PPQHDGLR_ 0 0 0 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2377624511719 2 460.240858 918.467164 0.38293 0.00017624 -3.5712 -0.0016436 -3.1883 -0.0014674 460.2394026426886 119.73 0.17469 115.27 115.19 115.37 -4.467 5 4 2 0 0 0 0.88974 1 23058 23058 0.25148 0 1 238970 34354 6744 23096 23111 33802 33802 0.0046686329772001045 PPQHWRCLYIE 11 Unmodified _PPQHWRCLYIE_ 0 0 0 REV__MSL1|p.M431I|1|0.06|ENSG00000188895|chr17:40129545-40129545|G/T|missense_variant REV__MSL1|p.M431I|1|0.06|ENSG00000188895|chr17:40129545-40129545|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24072265625 3 481.23969 1440.69724 NaN NaN NaN NaN NaN NaN NaN 165.05 1 160.26 159.76 160.76 -4.7898 0 0 0 0.22632 1 33025 33025 0.094841 0.068635 1 + 34355 23881 23097 23112 33803 33803 -0.005480911516769993 PPRAWCCCCCC 11 Unmodified _PPRAWCCCCCC_ 0 0 0 REV__ENST00000526531.1_1_11:830548-831706:+|nuORF REV__ENST00000526531.1_1_11:830548-831706:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7669677734375 2 622.701645 1243.38874 NaN NaN NaN NaN NaN NaN NaN 164.64 1 164.64 164.14 165.14 0 0 0 0 0.22632 1 33314 33314 0.057264 0 1 + 34356 18572 23098 23113 33804 33804 -0.22322179253205832 PPRERLQQR 9 Unmodified _PPRERLQQR_ 0 0 0 REV__ENSG00000129646|ENST00000680821|QRICH2 REV__ENSG00000129646|ENST00000680821|QRICH2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2499389648438 2 590.338895 1178.66324 NaN NaN NaN NaN NaN NaN NaN 145.66 1 140.99 140.49 141.49 -4.6738 0 0 0 0.23508 1 28875 28875 6.7232 0 1 + 34357 15968 23099 23114 33805 33805 0.08105248471611048 PPRGKSSS 8 Unmodified _PPRGKSSS_ 0 0 0 NCKAP5|p.P811S|1|0.07|ENSG00000176771|chr2:132784380-132784380|G/A|missense_variant NCKAP5|p.P811S|1|0.07|ENSG00000176771|chr2:132784380-132784380|G/A|missense_variant NCKAP5|p.P811S|1|0.07|ENSG00000176771|chr2:132784380-132784380|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 408.22125244140625 2 408.222134 814.429715 NaN NaN NaN NaN NaN NaN NaN 96.116 1 91.9 91.4 92.4 -4.2158 0 0 0 0.21486 1 18350 18350 4.756 1.8668 1 34358 12675 23100 23115 33806 33806 0.015077720320959997 PPRHGRLF 8 Unmodified _PPRHGRLF_ 0 0 0 REV__ENSG00000128607|ENST00000335420|KLHDC10 REV__ENSG00000128607|ENST00000335420|KLHDC10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.273193359375 2 490.28286 978.551168 NaN NaN NaN NaN NaN NaN NaN 147.52 1 142.36 141.86 142.86 -5.1557 0 0 0 0.21486 1 28547 28547 8.5933 2.2392 1 + 34359 15930 23101 23116 33807 33807 0.06103439185278603 PPRLARLAPG 10 Unmodified _PPRLARLAPG_ 0 0 0 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.85723876953125 3 349.885576 1046.6349 0.31222 0.00010924 -0.37266 -0.00013039 -0.060438 -2.1146E-05 349.8853980099592 30.943 0.56421 28.916 28.599 29.163 -2.0264 30 15 3 0 0 0 0.76159 1 5294 5294 2.086 0.17963 1 1385600 34360 4407 23102 23117 33808 33808 0.11344550562330369 PPRWPRLLLL 10 Unmodified _PPRWPRLLLL_ 0 0 0 TM9SF2|p.K52Rfs*9|2|0.39|ENSG00000125304|chr13:99501755-99501755|A/-|frameshift_variant;TM9SF2|p.K52Efs*16|1|0.3|ENSG00000125304|chr13:99501755-99501756|AA/-|frameshift_variant;TM9SF2|p.S145Afs*4|1|0.3|ENSG00000125304|chr13:99529560-99529560|A/-|frameshift_variant;ENSG00000125304|ENST00000376387|TM9SF2 TM9SF2|p.K52Rfs*9|2|0.39|ENSG00000125304|chr13:99501755-99501755|A/-|frameshift_variant TM9SF2|p.K52Rfs*9|2|0.39|ENSG00000125304|chr13:99501755-99501755|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7766723632812 2 630.9006 1259.78665 0.6242 0.00039381 4.2784 0.0026992 4.9026 0.0030931 631.4033487942555 153.83 0.17496 148.61 148.52 148.69 -5.2209 5 4 2 0 0 0 0.91149 1 29829 29829 6.2058 1.8765 1 1161900 34361 3348 23103 23118 33809 33809 0.1671453159003704 PPSFPVEQW 9 Unmodified _PPSFPVEQW_ 0 0 0 REV__ENST00000345016.9_1_19:2101821-2102175:-|nuORF REV__ENST00000345016.9_1_19:2101821-2102175:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.1807556152344 3 362.846675 1085.5182 0.050924 1.8478E-05 -0.093984 -3.4102E-05 -0.043061 -1.5624E-05 363.1808791860956 52.321 0.56074 49.233 49.025 49.586 -3.0876 22 15 2 0 0 0 0.87888 1 9586 9586 2.7352 1.9587 1 1523200 + 34362 20746 23104 23119 33810 33810 -0.021142324480933894 PPSFPVEQW 9 Unmodified _PPSFPVEQW_ 0 0 0 REV__ENST00000345016.9_1_19:2101821-2102175:-|nuORF REV__ENST00000345016.9_1_19:2101821-2102175:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 362.846675 1085.5182 0.011486 4.1677E-06 -0.30171 -0.00010947 -0.29022 -0.00010531 362.84665218384106 49.494 0.55843 49.494 49.16 49.719 0 0.13111 -0.00030107 NaN 2.7352 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1116900 + 34363 20746 23104 23119 -0.021142324480933894 PPSFPVEQW 9 Unmodified _PPSFPVEQW_ 0 0 0 REV__ENST00000345016.9_1_19:2101821-2102175:-|nuORF REV__ENST00000345016.9_1_19:2101821-2102175:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 362.846675 1085.5182 -0.44351 -0.00016093 0.40062 0.00014536 -0.042891 -1.5563E-05 362.8469707912788 52.243 0.4223 49.361 49.17 49.592 -2.8824 -0.0019022 0.00046345 NaN 2.7352 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 871460 + 34364 20746 23104 23119 -0.021142324480933894 PPSLSMPTV 9 Unmodified _PPSLSMPTV_ 0 0 0 REV__nc|ENSG00000181378|Q6ZU64-4|CFAP65 REV__nc|ENSG00000181378|Q6ZU64-4|CFAP65 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16485595703125 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 123.77 1 119.17 118.67 119.67 -4.5926 0 0 0 0.19636 1 23822 23822 0.40827 0.2854 1 + 34365 24198 23105 23120 33811 33811 0.006916204142157767 PPSPPPPPPP 10 Unmodified _PPSPPPPPPP_ 0 0 0 ENSG00000100312|ENST00000216139|ACR;ENST00000395348.7_1_10:61444064-61469743:-|nuORF;ENSG00000274209|ENST00000620264|ANTXRL REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant;ENSG00000274209|ENST00000620264|ANTXRL REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2541198730469 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 100.34 1 100.34 99.842 100.84 0 0 0 0 0.22588 1 19686 19686 12.532 0 1 34366 16390;8015 23106 23121 33812 33812 0.027349729028514957 PPSSPRTLRL 10 Unmodified _PPSSPRTLRL_ 0 0 0 ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335|PPFIA4;nc|ENSG00000143847|O75335-2|PPFIA4;nc|ENSG00000143847|O75335-1|PPFIA4 ENSG00000143847|ENST00000295706|PPFIA4 ENSG00000143847|ENST00000295706|PPFIA4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.22235107421875 3 375.224257 1122.65094 NaN NaN NaN NaN NaN NaN NaN 60.724 1 57.79 57.29 58.29 -2.9333 0 0 0 0.22534 1 11691 11691 20.581 8.4062 1 34367 4524 23107 23122 33813 33813 0.09452212008568495 PPSSPRTLRL 10 Unmodified _PPSSPRTLRL_ 0 0 0 ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335|PPFIA4;nc|ENSG00000143847|O75335-2|PPFIA4;nc|ENSG00000143847|O75335-1|PPFIA4 ENSG00000143847|ENST00000295706|PPFIA4 ENSG00000143847|ENST00000295706|PPFIA4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2192077636719 3 375.224257 1122.65094 NaN NaN NaN NaN NaN NaN NaN 61.126 1 57.757 57.257 58.257 -3.3694 0 0 0 0.22588 1 11393 11393 12.175 6.3913 1 34368 4524 23107 23122 33814 33814 0.09452212008568495 PPSTRWRTS 9 Unmodified _PPSTRWRTS_ 0 0 0 REV__ENST00000242480.3_1_10:64575680-64575746:-|nuORF REV__ENST00000242480.3_1_10:64575680-64575746:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.1807556152344 3 363.192957 1086.55704 NaN NaN NaN NaN NaN NaN NaN 52.135 1 49.048 48.548 49.548 -3.0876 0 0 0 0.23508 1 9586 9586 4.5289 1.6856 1 + 34369 20090 23108 23123 33815 33815 0.01722492906287698 PPSVTPDTPAT 11 Unmodified _PPSVTPDTPAT_ 0 0 0 ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant;CMYA5|p.I3735Hfs*2|1|0.08|ENSG00000164309|chr5:79758842-79758843|-/T|frameshift_variant;CMYA5|p.N2399Ifs*16|1|0.46|ENSG00000164309|chr5:79735957-79735957|A/-|frameshift_variant;CMYA5|p.M1226Wfs*13|1|0.22|ENSG00000164309|chr5:79732436-79732436|A/-|frameshift_variant;CMYA5|p.K1823Rfs*17|2|0.34|ENSG00000164309|chr5:79734227-79734227|A/-|frameshift_variant ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.268798828125 2 541.771854 1081.52915 0.29728 0.00016106 -1.1592 -0.000628 -0.86188 -0.00046694 541.771326475975 20.498 0.24948 20.498 20.313 20.562 0 10 6 2 0 0 0 0.85028 1 3378 3378 12.241 0 1 563640 34370 5532 23109 23124 33816 33816 -0.0083487486449485 PPTLSTDPQ 9 Unmodified _PPTLSTDPQ_ 0 0 0 REV__ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant REV__ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2548828125 2 478.24019 954.465826 0.74927 0.00035833 -0.98535 -0.00047123 -0.23608 -0.0001129 478.23973074039884 28.678 0.65169 26.722 26.468 27.12 -1.9561 67 18 7 0 0 0 0.5354 1 5153 5153 18.146 4.6385 1 5845800 + 34371 19136 23110 23125 33817 33817 -0.013228155817046172 PPTPAVPA 8 Unmodified _PPTPAVPA_ 0 0 0 REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;REV__KMT2D|p.V3089Wfs*30|1|0.12|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant;REV__KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21234130859375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 43.305 1 40.586 40.086 41.086 -2.7191 0 0 0 0.22834 1 8115 8115 1.7423 0 1 + 34372 17938;23733;23731 23111 23126 33818 33818 0.02767056777236121 PPTPAVPA 8 Unmodified _PPTPAVPA_ 0 0 0 REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;REV__KMT2D|p.V3089Wfs*30|1|0.12|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant;REV__KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2119445800781 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 43.418 1 40.652 40.152 41.152 -2.7661 0 0 0 0.20568 1 7840 7840 20.871 0 1 + 34373 17938;23733;23731 23111 23126 33819 33819 0.02767056777236121 PPTPPALR 8 Unmodified _PPTPPALR_ 0 0 0 ENST00000467101.5_1_20:60776202-60776382:+|nuORF ENST00000467101.5_1_20:60776202-60776382:+|nuORF ENST00000467101.5_1_20:60776202-60776382:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2549133300781 2 424.75307 847.491587 -0.36247 -0.00015396 0.64554 0.0002742 0.28307 0.00012023 424.75329907360555 48.195 0.5589 45.245 44.982 45.541 -2.9499 23 15 2 0 0 0 0.58432 1 8844 8844 23.148 0 1 735530 34374 10142 23112 23127 33820 33820 0.06174123451228297 PPTPWPTSP 9 Unmodified _PPTPWPTSP_ 0 0 0 REV__ENSG00000179094|ENST00000317276|PER1 REV__ENSG00000179094|ENST00000317276|PER1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2705078125 2 490.247818 978.481082 NaN NaN NaN NaN NaN NaN NaN 48.632 1 45.763 45.263 46.263 -2.869 0 0 0 0.1761 1 9200 9200 26.884 2.8631 1 + 34375 18638 23113 23128 33821 33821 -0.00901903993860742 PPTQKILK 8 Unmodified _PPTQKILK_ 0 0 0 REV__ENST00000252512.13_1_8:21829438-21832202:+|nuORF REV__ENST00000252512.13_1_8:21829438-21832202:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1652526855469 3 308.867411 923.580402 -0.44041 -0.00013603 0.38922 0.00012022 -0.051194 -1.5812E-05 308.86746564416933 41.893 1.0308 39.223 38.641 39.672 -2.6701 90 29 4 0 0 0 8448 1 7809 7809 0.0082765 0 1 16412000 + 34376 20112 23114 23129 33822 33822 0.11555538690902267 PPTSFVYFSP 10 Unmodified _PPTSFVYFSP_ 0 0 0 REV__nc|ENSG00000172554|Q9NY99-2|SNTG2 REV__nc|ENSG00000172554|Q9NY99-2|SNTG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21282958984375 3 381.19033 1140.54916 NaN NaN NaN NaN NaN NaN NaN 63.653 1 60.396 59.896 60.896 -3.2567 0 0 0 2.8426 1 11944 11944 3.8763 0 1 + 34377 18293 23115 23130 33823 33823 -0.015490791338379495 PPTVASYPP 9 Unmodified _PPTVASYPP_ 0 0 0 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 65.317 1 62.034 61.534 62.534 -3.2832 0 0 0 0.19624 1 12277 12277 0.073264 0 1 + 34378 18286 23116 23131 33824 33824 0.00354693631857117 PPTVASYPP 9 Unmodified _PPTVASYPP_ 0 0 0 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.233 1 65.843 65.343 66.343 -3.3903 0 0 0 0.23508 1 13088 13088 1.1933 0 1 + 34379 18286 23116 23131 33825 33825 0.00354693631857117 PPVAPPFFG 9 Unmodified _PPVAPPFFG_ 0 0 0 REV__ENST00000474290.1_1_15:44069611-44069677:+|nuORF REV__ENST00000474290.1_1_15:44069611-44069677:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17047119140625 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 43.183 1 43.183 42.683 43.683 0 0 0 0 0.23508 1 8089 8089 2.9952 0 1 + 34380 22080 23117 23132 33826 33826 0.018796052197103563 PPVAPPFFG 9 Unmodified _PPVAPPFFG_ 0 0 0 REV__ENST00000474290.1_1_15:44069611-44069677:+|nuORF REV__ENST00000474290.1_1_15:44069611-44069677:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1691589355469 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 43.401 1 43.401 42.901 43.901 0 0 0 0 0.23508 1 8129 8129 5.7319 0 1 + 34381 22080 23117 23132 33827 33827 0.018796052197103563 PPVFIFAVR 9 Unmodified _PPVFIFAVR_ 0 0 0 REV__ENST00000577498.1_1_17:26659331-26662401:-|nuORF REV__ENST00000577498.1_1_17:26659331-26662401:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6859130859375 2 523.313295 1044.61204 -0.28447 -0.00014886 0.96817 0.00050665 0.6837 0.00035779 523.3137472464797 57.991 0.44721 55.08 54.825 55.272 -2.9105 31 12 3 0 0 0 0.66537 1 11136 11136 8.5933 8.5933 1 3604500 + 34382 23216 23118 23133 33828 33828 0.09151531444831562 PPVFIFAVR 9 Unmodified _PPVFIFAVR_ 0 0 0 REV__ENST00000577498.1_1_17:26659331-26662401:-|nuORF REV__ENST00000577498.1_1_17:26659331-26662401:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6821899414062 2 523.313295 1044.61204 -0.51756 -0.00027085 1.3553 0.00070927 0.83779 0.00043842 523.3139623217165 58.345 0.51658 55.094 54.794 55.311 -3.2517 25 14 3 0 0 0 0.66537 1 10858 10858 8.5933 2.8329 1 2004800 + 34383 23216 23118 23133 33829 33829 0.09151531444831562 PPVFIFAVR 9 Unmodified _PPVFIFAVR_ 0 0 0 REV__ENST00000577498.1_1_17:26659331-26662401:-|nuORF REV__ENST00000577498.1_1_17:26659331-26662401:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6912841796875 2 523.313295 1044.61204 -0.51756 -0.00027085 1.3553 0.00070927 0.83779 0.00043842 523.3139623217165 58.345 0.51658 55.094 54.794 55.311 -3.2517 25 14 3 0 0 0 0.86532 1 10837 10837 8.5933 8.5933 1 2004800 + 34384 23216 23118 23133 33830 33830 0.09151531444831562 PPVFIFAVR 9 Unmodified _PPVFIFAVR_ 0 0 0 REV__ENST00000577498.1_1_17:26659331-26662401:-|nuORF REV__ENST00000577498.1_1_17:26659331-26662401:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6866455078125 2 523.313295 1044.61204 0.13701 7.17E-05 0.75032 0.00039265 0.88734 0.00046435 523.313674165737 58.357 0.54957 55.152 54.885 55.434 -3.2052 31 15 3 0 0 0 0.86532 1 10865 10865 8.5933 8.5933 1 1951200 + 34385 23216 23118 23133 33831 33831 0.09151531444831562 PPVIKSPTA 9 Unmodified _PPVIKSPTA_ 0 0 0 ROBO1|p.A1489V|1|0.05|ENSG00000169855|chr3:78607011-78607011|G/A|missense_variant ROBO1|p.A1489V|1|0.05|ENSG00000169855|chr3:78607011-78607011|G/A|missense_variant ROBO1|p.A1489V|1|0.05|ENSG00000169855|chr3:78607011-78607011|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 454.7671813964844 2 455.273835 908.533118 0.23092 0.00010513 -0.17596 -8.011E-05 0.054963 2.5023E-05 455.27362830050913 36.695 1.2715 34.357 33.815 35.086 -2.3375 41 35 2 0 0 0 0.62649 1 6395 6395 0.40827 0 1 403230 34386 25617 23119 23134 33832 33832 0.07519259419882474 PPVIPNGR 8 Unmodified _PPVIPNGR_ 0 0 0 nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF;CR1|p.P1583Lfs*44|1|0.22|ENSG00000203710|chr1:207609487-207609487|C/-|frameshift_variant nc|ENSG00000203710|P17927|CR1 nc|ENSG00000203710|P17927|CR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2527160644531 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 176.97 1 172.09 171.59 172.59 -4.8739 0 0 0 0.21486 1 35212 35212 0.79363 0 1 34387 7540 23120 23135 33833 33833 0.056532393084808064 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2301330566406 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 42.855 1 42.855 42.355 43.355 0 0 0 0 0.21486 1 8022 8022 1.8442 1.3859 1 + 34388 18486 23121 23136 33834 33834 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17010498046875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 45.024 1 45.024 44.524 45.524 0 0 0 0 0.21486 1 8454 8454 1.8442 0 1 + 34389 18486 23121 23136 33835 33835 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2301025390625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 45.09 1 45.09 44.59 45.59 0 0 0 0 0.21486 1 8469 8469 1.8442 0 1 + 34390 18486 23121 23136 33836 33836 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17010498046875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 58.031 1 58.031 57.531 58.531 0 0 0 0 0.21486 1 11102 11102 1.8442 0 1 + 34391 18486 23121 23136 33837 33837 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647644042969 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 58.554 1 58.554 58.054 59.054 0 0 0 0 0.21486 1 11208 11208 1.8442 0 1 + 34392 18486 23121 23136 33838 33838 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.15966796875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 33.778 1 31.461 30.961 31.961 -2.3175 0 0 0 0.21486 1 6186 6186 1.8442 0 1 + 34393 18486 23121 23136 33839 33839 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2306823730469 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 33.897 1 31.579 31.079 32.079 -2.3175 0 0 0 0.21486 1 6212 6212 1.8442 0 1 + 34394 18486 23121 23136 33840 33840 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.164794921875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 64.158 1 61.161 60.661 61.661 -2.9975 0 0 0 0.21486 1 12406 12406 0.45834 0 1 + 34395 18486 23121 23136 33841 33841 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.23077392578125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 33.72 1 31.573 31.073 32.073 -2.1468 0 0 0 0.21486 1 5892 5892 1.8442 0 1 + 34396 18486 23121 23136 33842 33842 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2009582519531 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 61.832 1 58.463 57.963 58.963 -3.3694 0 0 0 0.21486 1 11532 11532 1.8442 0 1 + 34397 18486 23121 23136 33843 33843 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1960754394531 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 62.414 1 59.044 58.544 59.544 -3.3694 0 0 0 0.21486 1 11649 11649 0.45834 0 1 + 34398 18486 23121 23136 33844 33844 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2012023925781 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 62.507 1 59.137 58.637 59.637 -3.3694 0 0 0 0.21486 1 11669 11669 0.45834 0 1 + 34399 18486 23121 23136 33845 33845 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.22186279296875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 90.22 1 86.176 85.676 86.676 -4.0443 0 0 0 0.21486 1 17186 17186 1.8442 0 1 + 34400 18486 23121 23136 33846 33846 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1653137207031 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 33.891 1 31.675 31.175 32.175 -2.2158 0 0 0 0.23837 1 5922 5922 0.0082765 0 1 + 34401 18486 23121 23136 33847 33847 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1722106933594 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 37.499 1 35.161 34.661 35.661 -2.3375 0 0 0 0.21486 1 6641 6641 1.8442 0 1 + 34402 18486 23121 23136 33848 33848 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.23046875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 59.656 1 56.432 55.932 56.932 -3.2237 0 0 0 0.21486 1 11148 11148 0.45834 0 1 + 34403 18486 23121 23136 33849 33849 0.1126532432199383 PPVKVIIY 8 Unmodified _PPVKVIIY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650695800781 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 138.64 1 133.79 133.29 134.29 -4.8492 0 0 0 0.2396 1 26722 26722 0.063987 0.055711 1 + 34404 18486 23121 23136 33850 33850 0.1126532432199383 PPVLAITIS 9 Unmodified _PPVLAITIS_ 0 0 0 REV__PLTP|p.V350I|1|0.34|ENSG00000100979|chr20:45902499-45902499|C/T|missense_variant REV__PLTP|p.V350I|1|0.34|ENSG00000100979|chr20:45902499-45902499|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 456.7869567871094 2 455.784036 909.553519 0.13347 6.0835E-05 0.14131 6.4407E-05 0.27478 0.00012524 455.7840357964 160.56 1.2371 155.33 154.73 155.97 -5.2299 90 34 3 0 0 0 0.35556 1 31106 31106 18.614 15.983 1 9098500 + 34405 24489 23122 23137 33851 33851 0.09512430079701062 PPVLLPLV 8 Unmodified _PPVLLPLV_ 0 0 0 REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.241943359375 2 424.286214 846.557876 -0.014676 -6.227E-06 -0.62324 -0.00026443 -0.63792 -0.00027066 424.2862857981989 55.2 1.6652 55.2 54.662 56.327 0 81 46 3 0 0 0 8448 1 10441 10441 0.30703 0 1 3293700 + 34406 20878 23123 23138 33852 33852 0.12845939293265474 PPVLLPLV 8 Unmodified _PPVLLPLV_ 0 0 0 REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 424.286214 846.557876 -0.014676 -6.227E-06 -0.62324 -0.00026443 -0.63792 -0.00027066 424.2862857981989 55.2 1.6652 55.2 54.662 56.327 0 -0.17785 -0.00068288 NaN 0.30703 81 46 3 NaN NaN NaN NaN 0 NaN NaN 0 3293700 + 34407 20878 23123 23138 0.12845939293265474 PPVLLPLV 8 Unmodified _PPVLLPLV_ 0 0 0 REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 424.286214 846.557876 -0.23593 -0.0001001 0.34395 0.00014593 0.10801 4.5827E-05 424.28632002663966 58.36 0.65277 55.45 55.098 55.751 -2.9105 0.072456 0.00013785 NaN 0.30703 34 18 2 NaN NaN NaN NaN 0 NaN NaN 0 4395200 + 34408 20878 23123 23138 0.12845939293265474 PPVLLPLV 8 Unmodified _PPVLLPLV_ 0 0 0 REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 424.286214 846.557876 0.049459 2.0985E-05 -0.63886 -0.00027106 -0.5894 -0.00025008 424.2862564655565 58.67 0.87914 55.418 54.96 55.839 -3.2517 0.04037 -0.00069613 NaN 0.30703 56 24 3 NaN NaN NaN NaN 0 NaN NaN 0 4487900 + 34409 20878 23123 23138 0.12845939293265474 PPVLLPLV 8 Unmodified _PPVLLPLV_ 0 0 0 REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 424.286214 846.557876 -0.18763 -7.9607E-05 0.55628 0.00023602 0.36865 0.00015641 424.28639413860424 58.648 0.69271 55.443 55.095 55.787 -3.2052 0.065024 0.00031803 NaN 0.30703 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2804900 + 34410 20878 23123 23138 0.12845939293265474 PPVLVILKVK 10 Unmodified _PPVLVILKVK_ 0 0 0 REV__ENSG00000158769|ENST00000368026|F11R REV__ENSG00000158769|ENST00000368026|F11R MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.2604675292969 3 369.261761 1104.76345 NaN NaN NaN NaN NaN NaN NaN 155.14 1 155.14 154.64 155.64 0 0 0 0 0.22588 1 31099 31099 0 0 1 + 34411 17345 23124 23139 33853 33853 0.21526092752696968 PPVLVILKVK 10 Unmodified _PPVLVILKVK_ 0 0 0 REV__ENSG00000158769|ENST00000368026|F11R REV__ENSG00000158769|ENST00000368026|F11R MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.26300048828125 3 369.261761 1104.76345 NaN NaN NaN NaN NaN NaN NaN 157.15 1 157.15 156.65 157.65 0 0 0 0 0.22588 1 31536 31536 0.15932 0.15932 1 + 34412 17345 23124 23139 33854 33854 0.21526092752696968 PPVLVILKVKV 11 Unmodified _PPVLVILKVKV_ 0 0 0 REV__ENSG00000158769|ENST00000368026|F11R REV__ENSG00000158769|ENST00000368026|F11R MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 401.98388671875 3 402.284565 1203.83187 NaN NaN NaN NaN NaN NaN NaN 177.37 1 172.58 172.08 173.08 -4.7898 0 0 0 0.23698 1 36276 36276 0 0 1 + 34413 17345 23125 23140 33855 33855 0.23810337332542986 PPVSPHGA 8 Unmodified _PPVSPHGA_ 0 0 0 REV__ENST00000488865.2_1_1:45101919-45102123:+|nuORF REV__ENST00000488865.2_1_1:45101919-45102123:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21026611328125 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 74.61 1 71.246 70.746 71.746 -3.3643 0 0 0 0.23711 1 14556 14556 0.12286 0 1 + 34414 22279 23126 23141 33856 33856 -0.0029899802533464026 PPWFRERPG 9 Unmodified _PPWFRERPG_ 0 0 0 ENST00000436747.5_1_2:242694593-242694881:+|nuORF ENST00000436747.5_1_2:242694593-242694881:+|nuORF ENST00000436747.5_1_2:242694593-242694881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2189636230469 3 381.201564 1140.58286 NaN NaN NaN NaN NaN NaN NaN 17.795 1 16.28 15.78 16.78 -1.5148 0 0 0 0.23508 1 2604 2604 4.897 1.0207 1 34415 9844 23127 23142 33857 33857 0.01819387148543683 PPWIMPTD 8 Unmodified _PPWIMPTD_ 0 0 0 nc|ENSG00000168447|P51168-2|SCNN1B nc|ENSG00000168447|P51168-2|SCNN1B nc|ENSG00000168447|P51168-2|SCNN1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7296142578125 2 478.730946 955.447339 NaN NaN NaN NaN NaN NaN NaN 104.69 1 104.69 104.19 105.19 0 0 0 0 0.21486 1 20575 20575 10.183 0.10947 1 34416 12451 23128 23143 33858 33858 -0.032166487572681035 PPWPYGVL 8 Unmodified _PPWPYGVL_ 0 0 0 ENST00000449739.6_1_4:73923833-73935428:-|nuORF ENST00000449739.6_1_4:73923833-73935428:-|nuORF ENST00000449739.6_1_4:73923833-73935428:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698303222656 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 24.808 1 24.808 24.308 25.308 0 0 0 0 0.21486 1 4281 4281 1.8442 0 1 34417 9968 23129 23144 33859 33859 0.018796052197103563 PPWPYGVL 8 Unmodified _PPWPYGVL_ 0 0 0 ENST00000449739.6_1_4:73923833-73935428:-|nuORF ENST00000449739.6_1_4:73923833-73935428:-|nuORF ENST00000449739.6_1_4:73923833-73935428:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16998291015625 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 26.429 1 26.429 25.929 26.929 0 0 0 0 0.21486 1 4626 4626 1.8442 0 1 34418 9968 23129 23144 33860 33860 0.018796052197103563 PPWPYGVL 8 Unmodified _PPWPYGVL_ 0 0 0 ENST00000449739.6_1_4:73923833-73935428:-|nuORF ENST00000449739.6_1_4:73923833-73935428:-|nuORF ENST00000449739.6_1_4:73923833-73935428:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650695800781 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 31.434 1 31.434 30.934 31.934 0 0 0 0 0.21486 1 5677 5677 1.8442 0 1 34419 9968 23129 23144 33861 33861 0.018796052197103563 PPWPYGVL 8 Unmodified _PPWPYGVL_ 0 0 0 ENST00000449739.6_1_4:73923833-73935428:-|nuORF ENST00000449739.6_1_4:73923833-73935428:-|nuORF ENST00000449739.6_1_4:73923833-73935428:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16998291015625 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 31.629 1 31.629 31.129 32.129 0 0 0 0 0.21486 1 5720 5720 1.8442 0 1 34420 9968 23129 23144 33862 33862 0.018796052197103563 PPWPYGVL 8 Unmodified _PPWPYGVL_ 0 0 0 ENST00000449739.6_1_4:73923833-73935428:-|nuORF ENST00000449739.6_1_4:73923833-73935428:-|nuORF ENST00000449739.6_1_4:73923833-73935428:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700134277344 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 46.728 1 46.728 46.228 47.228 0 0 0 0 0.21486 1 8806 8806 1.8442 0 1 34421 9968 23129 23144 33863 33863 0.018796052197103563 PPWQLCKNR 9 Unmodified _PPWQLCKNR_ 0 0 0 REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2097473144531 3 381.202687 1140.58623 NaN NaN NaN NaN NaN NaN NaN 122.74 1 122.74 122.24 123.24 0 0 0 0 0.23508 1 24190 24190 2.9952 0 1 + 34422 24595 23130 23145 33864 33864 0.02156313930890974 PPWQLCKNR 9 Unmodified _PPWQLCKNR_ 0 0 0 REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2021789550781 3 381.202687 1140.58623 NaN NaN NaN NaN NaN NaN NaN 116.33 1 111.97 111.47 112.47 -4.3585 0 0 0 0.23508 1 22394 22394 2.9952 0 1 + 34423 24595 23130 23145 33865 33865 0.02156313930890974 PPWRRWRPWFR 11 Unmodified _PPWRRWRPWFR_ 0 0 0 ENST00000532024.1_1_11:70118214-70118385:+|nuORF ENST00000532024.1_1_11:70118214-70118385:+|nuORF ENST00000532024.1_1_11:70118214-70118385:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7764892578125 3 547.300494 1638.87965 0.33544 0.00018359 -1.7446 -0.00095481 -1.4091 -0.00077122 547.6349063486751 152.87 0.17989 152.87 152.74 152.92 0 5 4 2 0 0 0 0.96226 1 30634 30634 0.36667 0.27183 1 1544000 34424 10975 23131 23146 33866 33866 0.08576849095948091 PPYLFPWSRRQ 11 Unmodified _PPYLFPWSRRQ_ 0 0 0 ENST00000536017.1_1_11:64053809-64053992:+|nuORF ENST00000536017.1_1_11:64053809-64053992:+|nuORF ENST00000536017.1_1_11:64053809-64053992:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 482.9916687011719 3 482.926211 1445.7568 NaN NaN NaN NaN NaN NaN NaN 159.58 1 159.58 159.08 160.08 0 0 0 0 0.23698 1 32044 32044 1.4551 0.12547 1 34425 11022 23132 23147 33867 33867 0.051755478540144395 PQAGGSCIWYY 11 Unmodified _PQAGGSCIWYY_ 0 0 0 ENSG00000176092|ENST00000308182|CRYBG2;ENST00000374211.5_1_1:26648461-26651325:-|nuORF ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7720947265625 2 622.773874 1243.53319 NaN NaN NaN NaN NaN NaN NaN 118.94 1 118.94 118.44 119.44 0 0 0 0 0.23379 1 23427 23427 5.2969 0.066215 1 34426 6446 23133 23148 33868 33868 -0.07883108642386105 PQAHAPGP 8 Unmodified _PQAHAPGP_ 0 0 0 ENST00000565010.1_1_16:602313-602601:+|nuORF ENST00000565010.1_1_16:602313-602601:+|nuORF ENST00000565010.1_1_16:602313-602601:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71240234375 2 387.698295 773.382037 NaN NaN NaN NaN NaN NaN NaN 52.75 1 49.866 49.366 50.366 -2.8837 0 0 0 0.12938 1 10044 10044 40.449 8.3316 1 34427 11351 23134 23149 33869 33869 -0.013718821680981819 PQAKPPLTLT 10 Unmodified _PQAKPPLTLT_ 0 0 0 REV__ENST00000557397.5_1_14:58877654-58893880:-|nuORF REV__ENST00000557397.5_1_14:58877654-58893880:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2861938476562 2 533.318774 1064.623 NaN NaN NaN NaN NaN NaN NaN 13.584 1 12.411 11.911 12.911 -1.173 0 0 0 0.22588 1 1775 1775 1.4819 0.79152 1 + 34428 20016 23135 23150 33870 33870 0.09326889028443475 PQAKRKIQHV 10 Unmodified _PQAKRKIQHV_ 0 0 0 nc|nan|Q9BVC5-2|C2orf49;ENSG00000135974|ENST00000258457|C2orf49 nc|nan|Q9BVC5-2|C2orf49 nc|nan|Q9BVC5-2|C2orf49 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.6781005859375 2 602.867289 1203.72002 NaN NaN NaN NaN NaN NaN NaN 165.26 1 160.47 159.97 160.97 -4.7898 0 0 0 0.22588 1 33083 33083 9.3831 3.1773 1 34429 3973 23136 23151 33871 33871 0.12631296028121142 PQALHPAVFD 10 Unmodified _PQALHPAVFD_ 0 0 0 REV__nc|ENSG00000136270|Q969Z0-2|TBRG4 REV__nc|ENSG00000136270|Q969Z0-2|TBRG4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7784423828125 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 158.76 1 153.48 152.98 153.98 -5.2748 0 0 0 0.22588 1 30814 30814 8.7454 0 1 + 34430 16322 23137 23152 33872 33872 0.012608588175226032 PQAPSDTFV 9 Unmodified _PQAPSDTFV_ 0 0 0 ENST00000564161.1_1_16:88690258-88690471:+|nuORF ENST00000564161.1_1_16:88690258-88690471:+|nuORF ENST00000564161.1_1_16:88690258-88690471:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.233642578125 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 173.47 1 168.57 168.07 169.07 -4.8977 0 0 0 0.23508 1 34445 34445 6.7232 0.36906 1 34431 11341 23138 23153 33873 33873 -0.02654798236142142 PQASSSPSRVA 11 Unmodified _PQASSSPSRVA_ 0 0 0 REV__ENST00000376962.9_1_9:74978504-74980043:-|nuORF REV__ENST00000376962.9_1_9:74978504-74980043:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7803344726562 2 543.780544 1085.54654 -0.023335 -1.2689E-05 -0.10307 -5.6048E-05 -0.12641 -6.8737E-05 543.7802177671382 43.561 0.63787 40.795 40.685 41.323 -2.7661 21 17 2 0 0 0 0.60781 1 7928 7928 5.4027 0 1 893470 + 34432 21083 23139 23154 33874 33874 0.00718465461204687 PQATYHVL 8 Unmodified _PQATYHVL_ 0 0 0 REV__ENST00000532338.5_1_8:145534845-145537990:+|nuORF REV__ENST00000532338.5_1_8:145534845-145537990:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2508850097656 2 464.747985 927.481417 -0.09948 -4.6233E-05 -2.1425 -0.00099573 -2.242 -0.001042 464.745858840736 42.293 1.0201 39.642 38.9 39.92 -2.651 60 28 3 0 0 0 8448 1 7512 7512 10.074 1.9184 1 3630700 + 34433 18943 23140 23155 33875 33875 0.01477515725991907 PQCEVARRK 9 Unmodified _PQCEVARRK_ 0 0 0 nc|ENSG00000159873|Q8IWD4-2|CCDC117;nc|ENSG00000159873|Q8IWD4-3|CCDC117;ENSG00000159873|ENST00000249064|CCDC117 nc|ENSG00000159873|Q8IWD4-2|CCDC117 nc|ENSG00000159873|Q8IWD4-2|CCDC117 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.796630859375 2 543.795475 1085.5764 NaN NaN NaN NaN NaN NaN NaN 160.96 1 156.16 155.66 156.66 -4.7952 0 0 0 0.22962 1 32010 32010 14.838 1.7958 1 34434 5220 23141 23156 33876 33876 0.03703125925540007 PQCSSSSMCSA 11 Unmodified _PQCSSSSMCSA_ 0 0 0 ENST00000481500.1_1_2:242277175-242285749:+|nuORF ENST00000481500.1_1_2:242277175-242285749:+|nuORF ENST00000481500.1_1_2:242277175-242285749:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.784423828125 2 544.196284 1086.37802 0.1185 6.4486E-05 -1.207 -0.00065685 -1.0885 -0.00059237 544.1955338409362 37.465 1.3025 35.117 34.006 35.308 -2.3479 57 37 2 0 0 0 0.89055 1 6491 6491 0.0072825 0.0067181 1 663240 34435 10378 23142 23157 33877 33877 -0.1617184383062522 PQDCDSPAP 9 Unmodified _PQDCDSPAP_ 0 0 0 ENST00000549526.1_1_12:50493222-50493899:+|nuORF ENST00000549526.1_1_12:50493222-50493899:+|nuORF ENST00000549526.1_1_12:50493222-50493899:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2589111328125 2 465.1871 928.359646 NaN NaN NaN NaN NaN NaN NaN 43.298 1 43.298 42.798 43.798 0 0 0 0 0.22962 1 8111 8111 14.838 1.3304 1 34436 11165 23143 23158 33878 33878 -0.10739894418702534 PQDDDYLYCE 10 Unmodified _PQDDDYLYCE_ 0 0 0 ENSG00000164256|ENST00000296682|PRDM9;ENSG00000126856|ENST00000449207|PRDM7 ENSG00000164256|ENST00000296682|PRDM9 ENSG00000164256|ENST00000296682|PRDM9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.751708984375 2 630.739893 1259.46523 NaN NaN NaN NaN NaN NaN NaN 140.11 1 135.16 134.66 135.66 -4.952 0 0 0 0.22588 1 26961 26961 2.9952 0 1 34437 5526 23144 23159 33879 33879 -0.1541202308371794 PQDDSPDT 8 Unmodified _PQDDSPDT_ 0 0 0 REV__nc|ENSG00000136738|Q92783-2|STAM REV__nc|ENSG00000136738|Q92783-2|STAM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2362365722656 2 437.674879 873.335206 0.18825 8.2392E-05 0.89585 0.00039209 1.0841 0.00047448 437.67630689915313 71.932 0.17166 68.393 68.295 68.466 -3.5385 6 4 2 0 0 0 1.0066 1 13626 13626 7.2892 2.96 1 230180 + 34438 16345 23145 23160 33880 33880 -0.10652831300558319 PQDHIKVTQ 9 Unmodified _PQDHIKVTQ_ 0 0 0 ENSG00000110395|ENST00000264033|CBL;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2855224609375 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 69.201 1 69.201 68.701 69.701 0 0 0 0 0.22193 1 13393 13393 17.113 0.1706 1 34439 400 23146 23161 33881 33881 0.031759573291765264 PQDMKFGNQ 9 Unmodified _PQDMKFGNQ_ 0 0 0 REV__ENSG00000122025|ENST00000241453|FLT3 REV__ENSG00000122025|ENST00000241453|FLT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2806396484375 2 532.745116 1063.47568 0.91912 0.00048966 2.5812 0.0013751 3.5003 0.0018648 532.7465469916209 23.688 0.17232 22.135 22.012 22.184 -1.5532 6 4 2 0 0 0 0.87634 1 4088 4088 6.7232 0.99131 1 404010 + 34440 15672 23147 23162 33882 33882 -0.05351950847966691 PQDYEMWIY 9 Unmodified _PQDYEMWIY_ 0 0 0 REV__ENSG00000108797|ENST00000264638|CNTNAP1 REV__ENSG00000108797|ENST00000264638|CNTNAP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7677001953125 2 622.768257 1243.52196 NaN NaN NaN NaN NaN NaN NaN 31.638 1 29.407 28.907 29.907 -2.2305 0 0 0 0.23508 1 5747 5747 4.756 0.81161 1 + 34441 15138 23148 23163 33883 33883 -0.09005930736543633 PQEETLQA 8 Unmodified _PQEETLQA_ 0 0 0 nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR;TSHR|p.D382Y|1|0.21|ENSG00000165409|chr14:81143202-81143202|G/T|missense_variant nc|ENSG00000165409|P16473|TSHR nc|ENSG00000165409|P16473|TSHR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2243957519531 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 15.272 1 14.158 13.658 14.658 -1.1142 0 0 0 0.2396 1 2344 2344 0.30703 0 1 34442 5625 23149 23164 33884 33884 -0.0261138861579866 PQEGFGQTFSY 11 Unmodified _PQEGFGQTFSY_ 0 0 0 REV__ZNF768|p.D196Y|1|0.29|ENSG00000169957|chr16:30525554-30525554|C/A|missense_variant REV__ZNF768|p.D196Y|1|0.29|ENSG00000169957|chr16:30525554-30525554|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7796630859375 2 630.78021 1259.54587 NaN NaN NaN NaN NaN NaN NaN 101.01 1 101.01 100.51 101.51 0 0 0 0 0.23379 1 19817 19817 5.2969 1.3525 1 + 34443 25593 23150 23165 33885 33885 -0.07352373978528703 PQEKITKTT 9 Unmodified _PQEKITKTT_ 0 0 0 REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 349.2008056640625 3 349.201118 1044.58152 NaN NaN NaN NaN NaN NaN NaN 156.93 1 152.14 151.64 152.64 -4.7885 0 0 0 0.23508 1 31207 31207 1.0715 0 1 + 34444 19033 23151 23166 33886 33886 0.061017082691250835 PQEMMKIFA 9 Unmodified _PQEMMKIFA_ 0 0 0 EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF;EPG5|p.Y1902Ifs*26|3|0.23|ENSG00000152223|chr18:45879178-45879178|A/-|frameshift_variant;EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7853393554688 2 547.772288 1093.53002 0.32669 0.00017895 3.7606 0.0020599 4.0873 0.0022389 548.2763515509137 127.94 0.35241 127.94 127.75 128.11 0 10 9 2 0 0 0 0.62102 1 25248 25248 11.64 3.047 1 2174700 34445 4910 23152 23167 33887 33887 -0.013000750207766032 PQEQKNKKLRQ 11 Unmodified _PQEQKNKKLRQ_ 0 0 0 LRRC17|p.L313*|1|0.16|ENSG00000128606|chr7:102944214-102944214|T/-|frameshift_variant;nc|ENSG00000128606|Q8N6Y2-2|LRRC17;LRRC17|p.K424Nfs*12|1|0.42|ENSG00000128606|chr7:102944546-102944546|A/-|frameshift_variant;ENSG00000128606|ENST00000339431|LRRC17 LRRC17|p.L313*|1|0.16|ENSG00000128606|chr7:102944214-102944214|T/-|frameshift_variant LRRC17|p.L313*|1|0.16|ENSG00000128606|chr7:102944214-102944214|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 698.9048461914062 2 698.904599 1395.79465 NaN NaN NaN NaN NaN NaN NaN 24.375 1 22.727 22.227 23.227 -1.6482 0 0 0 0.23698 1 4242 4242 1.3295 0 1 34446 3533 23153 23168 33888 33888 0.11258014048848963 PQERPEQTP 9 Unmodified _PQERPEQTP_ 0 0 0 REV__PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant REV__PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.266845703125 2 541.26727 1080.51999 -0.73179 -0.00039609 0.089059 4.8205E-05 -0.64273 -0.00034789 541.2671220267158 20.769 0.6938 19.048 18.659 19.353 -1.7211 30 19 2 0 0 0 0.71142 1 3263 3263 5.7319 0.43497 1 1078600 + 34447 14016 23154 23169 33889 33889 -0.017052234301445424 PQERQALS 8 Unmodified _PQERQALS_ 0 0 0 ENST00000522519.5_1_8:72875247-72964803:+|nuORF;ENST00000521467.5_1_8:72875247-72914501:+|nuORF ENST00000522519.5_1_8:72875247-72964803:+|nuORF ENST00000522519.5_1_8:72875247-72964803:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16510009765625 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 116.85 1 116.85 116.35 117.35 0 0 0 0 0.23584 1 23012 23012 0.12286 0 1 34448 10849 23155 23170 33890 33890 0.010754262322848263 PQERQALS 8 Unmodified _PQERQALS_ 0 0 0 ENST00000522519.5_1_8:72875247-72964803:+|nuORF;ENST00000521467.5_1_8:72875247-72914501:+|nuORF ENST00000522519.5_1_8:72875247-72964803:+|nuORF ENST00000522519.5_1_8:72875247-72964803:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1728515625 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 119.44 1 119.44 118.94 119.94 0 0 0 0 0.21486 1 23535 23535 3.9444 0 1 34449 10849 23155 23170 33891 33891 0.010754262322848263 PQERQALS 8 Unmodified _PQERQALS_ 0 0 0 ENST00000522519.5_1_8:72875247-72964803:+|nuORF;ENST00000521467.5_1_8:72875247-72914501:+|nuORF ENST00000522519.5_1_8:72875247-72964803:+|nuORF ENST00000522519.5_1_8:72875247-72964803:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16510009765625 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 119.77 1 119.77 119.27 120.27 0 0 0 0 0.23584 1 23602 23602 0.12286 0 1 34450 10849 23155 23170 33892 33892 0.010754262322848263 PQERSPRYF 9 Unmodified _PQERSPRYF_ 0 0 0 REV__ENST00000582201.5_1_17:62781409-62811241:-|nuORF;REV__PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant REV__PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.267822265625 2 590.298904 1178.58326 NaN NaN NaN NaN NaN NaN NaN 114.54 1 109.99 109.49 110.49 -4.555 0 0 0 0.23508 1 21991 21991 6.2058 0.9089 1 + 34451 23248;19723 23156 23171 33893 33893 0.0011076207774749491 PQFCVSHCCQ 10 Unmodified _PQFCVSHCCQ_ 0 0 0 REV__ENSG00000241241|ENST00000440582|KRTAP4-16 REV__ENSG00000241241|ENST00000440582|KRTAP4-16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3331298828125 2 576.225179 1150.43581 NaN NaN NaN NaN NaN NaN NaN 143.01 1 143.01 142.51 143.51 0 0 0 0 0.22588 1 28528 28528 3.2813 1.2216 1 + 34452 19784 23157 23172 33894 33894 -0.13339537114552513 PQFICEYF 8 Unmodified _PQFICEYF_ 0 0 0 REV__nc|ENSG00000116678|P48357-5|LEPR REV__nc|ENSG00000116678|P48357-5|LEPR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.697265625 2 523.736228 1045.4579 NaN NaN NaN NaN NaN NaN NaN 153.49 1 148.27 147.77 148.77 -5.2209 0 0 0 0.21486 1 29750 29750 5.7604 0 1 + 34453 15489 23158 23173 33895 33895 -0.0630066610283393 PQFQRTFY 8 Unmodified _PQFQRTFY_ 0 0 0 DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant;ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.G1030Afs*31|1|0.16|ENSG00000166341|chr11:6632423-6632423|C/-|frameshift_variant DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7705688476562 2 543.771991 1085.52943 NaN NaN NaN NaN NaN NaN NaN 151.64 1 146.89 146.39 147.39 -4.7523 0 0 0 0.21486 1 30131 30131 9.3474 0 1 34454 789 23159 23174 33896 33896 -0.009914103539585994 PQGCTSSAAPQ 11 Unmodified _PQGCTSSAAPQ_ 0 0 0 REV__ENST00000518253.5_1_6:90312741-90340720:+|nuORF REV__ENST00000518253.5_1_6:90312741-90340720:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6981201171875 2 523.732206 1045.44986 NaN NaN NaN NaN NaN NaN NaN 138.22 1 138.22 137.72 138.72 0 0 0 0 0.23379 1 27436 27436 5.2969 0 1 34455 13065 23160 23175 33897 33897 -0.07104845090270828 PQGDVDCHLA 10 Unmodified _PQGDVDCHLA_ 0 0 0 REV__ENSG00000129009|ENST00000249842|ISLR REV__ENSG00000129009|ENST00000249842|ISLR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 527.7677612304688 2 527.734748 1053.45494 NaN NaN NaN NaN NaN NaN NaN 142.59 1 142.59 142.09 143.09 0 0 0 0 0.22588 1 28431 28431 3.5965 0.31518 1 + 34456 15944 23161 23176 33898 33898 -0.06964541227625887 PQGEHAMSPQ 10 Unmodified _PQGEHAMSPQ_ 0 0 0 GREB1|p.R1159M|1|0.32|ENSG00000196208|chr2:11618351-11618351|G/T|missense_variant GREB1|p.R1159M|1|0.32|ENSG00000196208|chr2:11618351-11618351|G/T|missense_variant GREB1|p.R1159M|1|0.32|ENSG00000196208|chr2:11618351-11618351|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2631225585938 2 541.240198 1080.46584 NaN NaN NaN NaN NaN NaN NaN 146.52 1 146.52 146.02 147.02 0 0 0 0 0.22588 1 29298 29298 6.2058 0.44535 1 34457 11862 23162 23177 33899 33899 -0.07117138853368488 PQGENRSK 8 Unmodified _PQGENRSK_ 0 0 0 ENSG00000264717|ENST00000576178|NPY4R2;ENSG00000204174|ENST00000374312|NPY4R ENSG00000264717|ENST00000576178|NPY4R2 ENSG00000264717|ENST00000576178|NPY4R2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23516845703125 2 458.235773 914.456993 NaN NaN NaN NaN NaN NaN NaN 16.511 1 15.289 14.789 15.789 -1.2219 0 0 0 0.21486 1 2379 2379 12.532 0.89125 1 34458 7563 23163 23178 33900 33900 -0.003657444275177113 PQGEYQVLL 9 Unmodified _PQGEYQVLL_ 0 0 0 ENSG00000112799|ENST00000230568|LY86 ENSG00000112799|ENST00000230568|LY86 ENSG00000112799|ENST00000230568|LY86 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6996459960938 2 523.779482 1045.54441 NaN NaN NaN NaN NaN NaN NaN 161.78 1 156.59 156.09 157.09 -5.1878 0 0 0 0.21469 1 31402 31402 19.257 2.1441 1 34459 2713 23164 23179 33901 33901 0.023460367233838042 PQGGFQSPRL 10 Unmodified _PQGGFQSPRL_ 0 0 0 REV__C6|p.K582Efs*9|1|0.05|ENSG00000039537|chr5:41159193-41159194|TT/-|frameshift_variant REV__C6|p.K582Efs*9|1|0.05|ENSG00000039537|chr5:41159193-41159194|TT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.786865234375 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 145.39 1 140.32 139.82 140.82 -5.0671 0 0 0 0.22559 1 28093 28093 17.113 3.2068 1 + 34460 13227 23165 23180 33902 33902 0.022433770490579263 PQGHLQSTPT 10 Unmodified _PQGHLQSTPT_ 0 0 0 nc|ENSG00000230246|P0DKV0|SPATA31C1 nc|ENSG00000230246|P0DKV0|SPATA31C1 nc|ENSG00000230246|P0DKV0|SPATA31C1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2693481445312 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 12.975 1 12.975 12.475 13.475 0 0 0 0 0.22588 1 1842 1842 5.7319 0.50118 1 34461 12605 23166 23181 33903 33903 -0.004609195675357114 PQGHLQSTPT 10 Unmodified _PQGHLQSTPT_ 0 0 0 nc|ENSG00000230246|P0DKV0|SPATA31C1 nc|ENSG00000230246|P0DKV0|SPATA31C1 nc|ENSG00000230246|P0DKV0|SPATA31C1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2702026367188 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 18.694 1 18.694 18.194 19.194 0 0 0 0 0.14075 1 3022 3022 38.176 7.539 1 34462 12605 23166 23181 33904 33904 -0.004609195675357114 PQGLKVKQ 8 Unmodified _PQGLKVKQ_ 0 0 0 ENSG00000127418|ENST00000510644|FGFRL1 ENSG00000127418|ENST00000510644|FGFRL1 ENSG00000127418|ENST00000510644|FGFRL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.2784729003906 2 449.279452 896.544351 NaN NaN NaN NaN NaN NaN NaN 54.465 1 51.327 50.827 51.827 -3.1377 0 0 0 0.21486 1 10081 10081 4.756 1.8668 1 34463 3475 23167 23182 33905 33905 0.09194081514044683 PQGNLLWTL 9 Unmodified _PQGNLLWTL_ 0 0 0 REV__nc|ENSG00000138347|Q86TC9-2|MYPN REV__nc|ENSG00000138347|Q86TC9-2|MYPN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2739868164062 2 521.290017 1040.56548 -0.67617 -0.00035248 0.66374 0.000346 -0.012436 -6.4829E-06 521.2902917397784 50.86 1.0407 47.815 47.257 48.297 -3.0453 76 29 3 0 0 0 0.35556 1 9323 9323 12.241 0 1 4981400 + 34464 24060 23168 23183 33906 33906 0.0468204682290434 PQGQPPPPS 9 Unmodified _PQGQPPPPS_ 0 0 0 REV__nc|ENSG00000075340|P35612-3|ADD2 REV__nc|ENSG00000075340|P35612-3|ADD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7474060058594 2 452.729792 903.445031 -0.51946 -0.00023517 0.64461 0.00029183 0.12515 5.6659E-05 452.72999253154006 36.119 0.81275 33.725 33.276 34.089 -2.3938 71 22 5 0 0 0 0.38188 1 6611 6611 26.884 2.2098 1 19225000 + 34465 23951 23169 23184 33907 33907 -0.010553611707223354 PQGQPPPPS 9 Unmodified _PQGQPPPPS_ 0 0 0 REV__nc|ENSG00000075340|P35612-3|ADD2 REV__nc|ENSG00000075340|P35612-3|ADD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74749755859375 2 452.729792 903.445031 0.24436 0.00011063 -0.18833 -8.5264E-05 0.056031 2.5367E-05 452.7296481857188 36.024 0.7716 33.747 33.316 34.088 -2.2766 62 21 4 0 0 0 0.38188 1 6276 6276 26.884 5.137 1 15081000 + 34466 23951 23169 23184 33908 33908 -0.010553611707223354 PQGQPPPPS 9 Unmodified _PQGQPPPPS_ 0 0 0 REV__nc|ENSG00000075340|P35612-3|ADD2 REV__nc|ENSG00000075340|P35612-3|ADD2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 452.729792 903.445031 -0.51946 -0.00023517 0.64461 0.00029183 0.12515 5.6659E-05 452.72999253154006 36.119 0.81275 33.725 33.276 34.089 -2.3938 -0.026098 0.00046909 NaN 26.884 71 22 5 NaN NaN NaN NaN 0 NaN NaN 0 19225000 + 34467 23951 23169 23184 -0.010553611707223354 PQGQPPPPS 9 Unmodified _PQGQPPPPS_ 0 0 0 REV__nc|ENSG00000075340|P35612-3|ADD2 REV__nc|ENSG00000075340|P35612-3|ADD2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 452.729792 903.445031 0.088199 3.993E-05 0.028067 1.2707E-05 0.11627 5.2637E-05 452.729760112445 35.971 0.76982 33.718 33.366 34.136 -2.2527 -0.033002 -8.9163E-05 NaN 26.884 61 21 4 NaN NaN NaN NaN 0 NaN NaN 0 17642000 + 34468 23951 23169 23184 -0.010553611707223354 PQGRWKGRP 9 Unmodified _PQGRWKGRP_ 0 0 0 REV__TMC6|p.Y488Tfs*67|1|0.39|ENSG00000141524|chr17:78121087-78121087|G/-|frameshift_variant REV__TMC6|p.Y488Tfs*67|1|0.39|ENSG00000141524|chr17:78121087-78121087|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2740478515625 2 541.304324 1080.5941 NaN NaN NaN NaN NaN NaN NaN 110.57 1 110.57 110.07 111.07 0 0 0 0 0.23508 1 21747 21747 7.2892 0 1 + 34469 16636 23170 23185 33909 33909 0.05702209242713252 PQGTPLRPP 9 Unmodified _PQGTPLRPP_ 0 0 0 REV__ENST00000307201.4_1_17:27890035-27893454:-|nuORF REV__ENST00000307201.4_1_17:27890035-27893454:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77581787109375 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 15.49 1 14.316 13.816 14.816 -1.1739 0 0 0 0.23508 1 2388 2388 4.3292 0 1 + 34470 20445 23171 23186 33910 33910 0.05220893508658264 PQGYGQTPVP 10 Unmodified _PQGYGQTPVP_ 0 0 0 ENST00000524131.5_1_14:101302145-101302533:+|nuORF ENST00000524131.5_1_14:101302145-101302533:+|nuORF ENST00000524131.5_1_14:101302145-101302533:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2705688476562 2 522.261456 1042.50836 0.6927 0.00036177 -0.57241 -0.00029895 0.1203 6.2826E-05 522.261121425028 109.9 0.73291 105.71 105.47 106.2 -4.1826 31 20 2 0 0 0 0.06371 1 21130 21130 20.871 9.1219 1 2338700 34471 10875 23172 23187 33911 33911 -0.011194204534831442 PQHCGYQGSRA 11 Unmodified _PQHCGYQGSRA_ 0 0 0 REV__nc|ENSG00000130717|Q9HA47-2|UCK1 REV__nc|ENSG00000130717|Q9HA47-2|UCK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2921752929688 2 602.269821 1202.52509 NaN NaN NaN NaN NaN NaN NaN 144.04 1 138.98 138.48 139.48 -5.0671 0 0 0 0.23087 1 27775 27775 7.609 0.88579 1 + 34472 24036 23173 23188 33912 33912 -0.06807242839158789 PQHEPNDEDGE 11 Unmodified _PQHEPNDEDGE_ 0 0 0 nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 422.8334655761719 3 422.833823 1265.47964 NaN NaN NaN NaN NaN NaN NaN 7.882 1 6.8176 6.3176 7.3176 -1.0645 0 0 0 0.23698 1 726 726 0 0 1 34473 4291 23174 23189 33913 33913 -0.14248234611250155 PQHPILIRL 9 Unmodified _PQHPILIRL_ 0 0 0 REV__ENST00000227525.7_1_11:60690329-60690416:+|nuORF REV__ENST00000227525.7_1_11:60690329-60690416:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7713623046875 2 543.842751 1085.67095 NaN NaN NaN NaN NaN NaN NaN 133.07 1 128.22 127.72 128.72 -4.8527 0 0 0 0.23508 1 25562 25562 4.3292 0 1 + 34474 20053 23175 23190 33914 33914 0.13154007739171902 PQHPWYPYK 9 Unmodified _PQHPWYPYK_ 0 0 0 REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.3002624511719 3 405.869703 1214.58728 0.088177 3.5788E-05 0.35774 0.0001452 0.44592 0.00018098 405.86969688173235 83.084 0.51563 79.211 79.019 79.534 -3.8736 30 14 3 0 0 0 0.88054 1 15809 15809 2.2828 1.7196 1 1575300 + 34475 17974 23176 23191 33915 33915 -0.011431484285367333 PQHPWYPYK 9 Unmodified _PQHPWYPYK_ 0 0 0 REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 405.869703 1214.58728 0.43913 0.00017823 0.17297 7.0203E-05 0.6121 0.00024843 405.86963985386603 79.154 0.62546 79.154 78.819 79.444 0 -0.064761 -0.00048324 NaN 2.2828 37 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2586000 + 34476 17974 23176 23191 -0.011431484285367333 PQHPWYPYK 9 Unmodified _PQHPWYPYK_ 0 0 0 REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 405.869703 1214.58728 -0.19146 -7.7709E-05 0.57495 0.00023336 0.38349 0.00015565 405.8699218687128 82.816 0.55797 79.208 78.921 79.479 -3.6079 -0.010732 6.2182E-06 NaN 2.2828 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3061400 + 34477 17974 23176 23191 -0.011431484285367333 PQHPWYPYK 9 Unmodified _PQHPWYPYK_ 0 0 0 REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 405.869703 1214.58728 -0.57239 -0.00023232 1.0704 0.00043442 0.49796 0.00020211 405.87003649577554 83.001 0.54854 79.303 79.006 79.554 -3.6985 0.083589 0.00060942 NaN 2.2828 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2722400 + 34478 17974 23176 23191 -0.011431484285367333 PQHRQFRKRRR 11 Unmodified _PQHRQFRKRRR_ 0 0 0 REV__ENSG00000170122|ENST00000382500|FOXD4 REV__ENSG00000170122|ENST00000382500|FOXD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2656860351562 3 522.310052 1563.90833 0.3612 0.00018866 0.37178 0.00019419 0.73299 0.00038285 522.3089528320571 145.41 0.24434 140.47 140.34 140.59 -4.9445 9 6 2 0 0 0 0.96225 1 28114 28114 0.08335 0 1 1281300 + 34479 18142 23177 23192 33916 33916 0.14892966725074075 PQHSGVPQ 8 Unmodified _PQHSGVPQ_ 0 0 0 REV__ENST00000592456.1_1_17:76167504-76168014:+|nuORF REV__ENST00000592456.1_1_17:76167504-76168014:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2396240234375 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 98.891 1 94.622 94.122 95.122 -4.2692 0 0 0 0.21486 1 18906 18906 9.3474 0 1 + 34480 23352 23178 23193 33917 33917 -0.016205144849436692 PQHTCDDGSS 10 Unmodified _PQHTCDDGSS_ 0 0 0 REV__PPP1R3A|p.N476Kfs*4|1|0.28|ENSG00000154415|chr7:113879664-113879664|A/-|frameshift_variant REV__PPP1R3A|p.N476Kfs*4|1|0.28|ENSG00000154415|chr7:113879664-113879664|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6949462890625 2 523.69582 1045.37709 NaN NaN NaN NaN NaN NaN NaN 172.56 1 167.68 167.18 168.18 -4.881 0 0 0 2.8426 1 34260 34260 0.063865 0 1 + 34481 17180 23179 23194 33918 33918 -0.14378598883672566 PQHWEKENH 9 Unmodified _PQHWEKENH_ 0 0 0 REV__ENSG00000148795|ENST00000369887|CYP17A1 REV__ENSG00000148795|ENST00000369887|CYP17A1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2977905273438 2 602.778336 1203.54212 NaN NaN NaN NaN NaN NaN NaN 17.172 1 15.956 15.456 16.456 -1.2159 0 0 0 0.23508 1 2739 2739 4.3292 1.0479 1 + 34482 16988 23180 23195 33919 33919 -0.05150998961721598 PQHWRCLYME 10 Unmodified _PQHWRCLYME_ 0 0 0 REV__nc|ENSG00000188895|Q68DK7-3|MSL1 REV__nc|ENSG00000188895|Q68DK7-3|MSL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 681.8097534179688 2 681.807725 1361.6009 NaN NaN NaN NaN NaN NaN NaN 32.847 1 30.631 30.131 31.131 -2.2158 0 0 0 0.22588 1 5705 5705 3.5965 0.31518 1 + 34483 19177 23181 23196 33920 33920 -0.0654398198328181 PQIILLIELK 10 Unmodified _PQIILLIELK_ 0 0 0 ENST00000461177.1_1_9:107526521-107531179:+|nuORF ENST00000461177.1_1_9:107526521-107531179:+|nuORF ENST00000461177.1_1_9:107526521-107531179:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2590942382812 2 590.389199 1178.76385 NaN NaN NaN NaN NaN NaN NaN 95.122 1 91.241 90.741 91.741 -3.881 0 0 0 0.22588 1 18251 18251 0.40072 0 1 34484 10065 23182 23197 33921 33921 0.18161467681898102 PQILMMEL 8 Unmodified _PQILMMEL_ 0 0 0 ENST00000377653.2_1_9:39174468-39266986:-|nuORF ENST00000377653.2_1_9:39174468-39266986:-|nuORF ENST00000377653.2_1_9:39174468-39266986:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.76263427734375 2 487.756107 973.49766 0.27737 0.00013529 -1.001 -0.00048824 -0.72362 -0.00035295 487.75554711120776 128.53 1.5169 123.72 123.23 124.75 -4.817 125 42 5 0 0 0 8448 1 24640 24640 4.2837 0 1 97896000 34485 9265 23183 23198 33922 33922 0.009851375762309544 PQILRFLR 8 Unmodified _PQILRFLR_ 0 0 0 nc|ENSG00000165511|Q5T742|ZNF22-AS1 nc|ENSG00000165511|Q5T742|ZNF22-AS1 nc|ENSG00000165511|Q5T742|ZNF22-AS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.1466064453125 2 521.829643 1041.64473 0.35481 0.00018515 -0.44577 -0.00023261 -0.090959 -4.7465E-05 521.8303201834714 144.74 0.17145 139.8 139.69 139.86 -4.9445 6 4 2 0 0 0 1.0011 1 27943 27943 4.3292 2.6766 1 3152500 34486 12433 23184 23199 33923 33923 0.12557738567693377 PQIQDARAAL 10 Unmodified _PQIQDARAAL_ 0 0 0 ENST00000599538.5_1_19:50528609-50528858:-|nuORF ENST00000599538.5_1_19:50528609-50528858:-|nuORF ENST00000599538.5_1_19:50528609-50528858:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.261962890625 2 541.80128 1081.58801 0.33158 0.00017965 -0.46543 -0.00025217 -0.13386 -7.2525E-05 541.7999677519825 151.03 0.13867 146.28 146.22 146.36 -4.7523 5 3 2 0 0 0 0.83271 1 29990 29990 16.149 6.766 1 947750 34487 11693 23185 23200 33924 33924 0.05047646220509705 PQKAPSRPY 9 Unmodified _PQKAPSRPY_ 0 0 0 nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2 nc|ENSG00000119139|Q9UDY2-4|TJP2 nc|ENSG00000119139|Q9UDY2-4|TJP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2719116210938 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 62.392 1 59.152 58.652 59.652 -3.2395 0 0 0 0.23508 1 11697 11697 7.2892 0 1 34488 3061 23186 23201 33925 33925 0.03640278537386621 PQKEPFHRL 9 Unmodified _PQKEPFHRL_ 0 0 0 REV__ENSG00000167619|ENST00000301204|TMEM145 REV__ENSG00000167619|ENST00000301204|TMEM145 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.321533203125 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 154.22 1 149.45 148.95 149.95 -4.7684 0 0 0 0.19636 1 30653 30653 2.4985 2.3756 1 + 34489 17946 23187 23202 33926 33926 0.055439428370846144 PQKIDLDI 8 Unmodified _PQKIDLDI_ 0 0 0 REV__tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1 REV__tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 473.2506103515625 2 471.26875 940.522947 0.44211 0.00020835 -0.31613 -0.00014898 0.12598 5.9369E-05 471.2685364848159 159.38 1.0425 154.11 153.59 154.63 -5.2712 82 28 4 0 0 0 8448 1 30966 30966 1.7423 0 1 34072000 + 34490 24938 23188 23203 33927 33927 0.0503065169467618 PQKIMPPSKPH 11 Unmodified _PQKIMPPSKPH_ 0 0 0 nc|ENSG00000203780|Q8TC84-2|FANK1;ENSG00000203780|ENST00000368693|FANK1;nc|ENSG00000203780|Q8TC84-3|FANK1 nc|ENSG00000203780|Q8TC84-2|FANK1 nc|ENSG00000203780|Q8TC84-2|FANK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7750244140625 2 630.350083 1258.68561 0.40065 0.00025255 -1.4339 -0.00090386 -1.0333 -0.00065131 630.3508495019321 129.41 0.16837 129.41 129.33 129.5 0 6 4 2 0 0 0 0.93546 1 25577 25577 8.1555 0.54658 1 1550000 34491 7549 23189 23204 33928 33928 0.06661711824995109 PQKLLLPKPKV 11 Unmodified _PQKLLLPKPKV_ 0 0 0 nc|ENSG00000166454|O43313-2|ATMIN;ENSG00000166454|ENST00000299575|ATMIN nc|ENSG00000166454|O43313-2|ATMIN nc|ENSG00000166454|O43313-2|ATMIN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.75830078125 2 630.923741 1259.83293 NaN NaN NaN NaN NaN NaN NaN 87.212 1 87.212 86.712 87.712 0 0 0 0 0.22632 1 17023 17023 0.00056442 0.00056442 1 34492 5727 23190 23205 33929 33929 0.2134055170145075 PQKSHALT 8 Unmodified _PQKSHALT_ 0 0 0 REV__nc|ENSG00000023902|Q53GL0-2|PLEKHO1 REV__nc|ENSG00000023902|Q53GL0-2|PLEKHO1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 441.2253723144531 2 441.245609 880.476666 NaN NaN NaN NaN NaN NaN NaN 134.45 1 129.63 129.13 130.13 -4.8175 0 0 0 0.21486 1 25884 25884 4.3292 1.7518 1 + 34493 13996 23191 23206 33930 33930 0.0316463158321767 PQKWSEGNEQ 10 Unmodified _PQKWSEGNEQ_ 0 0 0 REV__ENST00000454890.1_1_2:231773621-231774413:+|nuORF REV__ENST00000454890.1_1_2:231773621-231774413:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.28759765625 2 601.775459 1201.53637 1.0083 0.00060676 2.4364 0.0014662 3.4447 0.0020729 602.276252158346 133.94 0.17763 129.3 129.21 129.39 -4.6399 6 4 2 0 0 0 0.91049 1 26422 26422 2.7352 1.2533 1 1121900 + 34494 21842 23192 23207 33931 33931 -0.05634142264034381 PQLFLLLAAT 10 Unmodified _PQLFLLLAAT_ 0 0 0 ENST00000526749.1_1_8:145735004-145735891:+|nuORF;ENST00000528047.5_1_8:145734716-145735997:+|nuORF;MFSD3|p.H329Tfs*15|1|0.44|ENSG00000167700|chr8:144510823-144510823|C/-|frameshift_variant;ENSG00000167700|ENST00000301327|MFSD3 ENST00000526749.1_1_8:145735004-145735891:+|nuORF ENST00000526749.1_1_8:145735004-145735891:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.771484375 2 543.831517 1085.64848 NaN NaN NaN NaN NaN NaN NaN 19.036 1 17.401 16.901 17.901 -1.6351 0 0 0 0.22588 1 2849 2849 6.7232 0.51738 1 34495 5836 23193 23208 33932 33932 0.10908363550879585 PQLFPLLHT 9 Unmodified _PQLFPLLHT_ 0 0 0 REV__ENST00000455895.6_1_1:32831387-32831657:-|nuORF REV__ENST00000455895.6_1_1:32831387-32831657:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2850341796875 2 533.30821 1064.60187 NaN NaN NaN NaN NaN NaN NaN 135.25 1 135.25 134.75 135.75 0 0 0 0 0.23508 1 26787 26787 7.2892 1.5288 1 + 34496 21849 23194 23209 33933 33933 0.07214923719607214 PQLFTKGLYL 10 Unmodified _PQLFTKGLYL_ 0 0 0 REV__ERMP1|p.K435T|1|0.2|ENSG00000099219|chr9:5811134-5811134|T/G|missense_variant REV__ERMP1|p.K435T|1|0.2|ENSG00000099219|chr9:5811134-5811134|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2625732421875 2 590.342249 1178.66995 NaN NaN NaN NaN NaN NaN NaN 154.77 1 149.99 149.49 150.49 -4.7791 0 0 0 0.22588 1 30765 30765 11.495 4.7715 1 + 34497 23503 23195 23210 33934 33934 0.08775748579637366 PQLKSRTGK 9 Unmodified _PQLKSRTGK_ 0 0 0 ENSG00000154783|ENST00000285046|FGD5;FGD5|p.R714Q|1|0.27|ENSG00000154783|chr3:14821212-14821212|G/A|missense_variant;FGD5|p.D818*|1|0.19|ENSG00000154783|chr3:14821521-14821522|-/C|frameshift_variant;FGD5|p.T1238Pfs*9|1|0.25|ENSG00000154783|chr3:14922447-14922447|C/-|frameshift_variant ENSG00000154783|ENST00000285046|FGD5 ENSG00000154783|ENST00000285046|FGD5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.54833984375 3 338.873336 1013.59818 0.19159 6.4924E-05 -0.81042 -0.00027463 -0.61883 -0.0002097 338.87311858243316 27.032 0.77224 25.397 25.178 25.95 -1.6347 47 21 3 0 0 0 0.78323 1 4481 4481 2.4985 0 1 4296600 34498 5025 23196 23211 33935 33935 0.09192253945752782 PQLKVKMVK 9 Unmodified _PQLKVKMVK_ 0 0 0 REV__nc|ENSG00000100083|Q9UJY5-4|GGA1 REV__nc|ENSG00000100083|Q9UJY5-4|GGA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.56353759765625 3 357.563334 1069.66817 NaN NaN NaN NaN NaN NaN NaN 27.728 1 25.731 25.231 26.231 -1.9962 0 0 0 0.16423 1 4649 4649 28.495 1.2713 1 + 34499 14664 23197 23212 33936 33936 0.13612416290015972 PQLLGGLRLK 10 Unmodified _PQLLGGLRLK_ 0 0 0 REV__ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P REV__ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7892456054688 2 547.855858 1093.69716 0.13417 7.3505E-05 3.9786 0.0021797 4.1128 0.0022532 547.856626512319 145.78 0.34413 140.67 140.45 140.79 -5.1108 11 9 2 0 0 0 0.74842 1 28146 28146 6.2058 1.8765 1 2978600 + 34500 19953 23198 23213 33937 33937 0.15406276910653105 PQLLLLKLR 9 Unmodified _PQLLLLKLR_ 0 0 0 REV__ENST00000555988.1_2_14:75356010-75360059:+|nuORF REV__ENST00000555988.1_2_14:75356010-75360059:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.791259765625 2 547.376426 1092.7383 0.33007 0.00018067 4.066 0.0022256 4.396 0.0024063 547.8788665983001 136.6 0.17902 136.6 136.55 136.73 0 5 4 2 0 0 0 0.88312 1 27069 27069 0.45834 0.45834 1 1901500 + 34501 22988 23199 23214 33938 33938 0.19564037950112834 PQLLVQVRI 9 Unmodified _PQLLVQVRI_ 0 0 0 nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4;NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant;ENST00000572029.1_1_17:7221711-7224101:-|nuORF nc|ENSG00000215041|Q96JN8-2|NEURL4 nc|ENSG00000215041|Q96JN8-2|NEURL4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.261962890625 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 144.84 1 139.77 139.27 140.27 -5.0671 0 0 0 0.23508 1 27959 27959 7.2892 2.96 1 34502 7739 23200 23215 33939 33939 0.1408658801931324 PQLMTHGFR 9 Unmodified _PQLMTHGFR_ 0 0 0 REV__ENSG00000121053|ENST00000225371|EPX REV__ENSG00000121053|ENST00000225371|EPX MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7794799804688 2 543.779293 1085.54403 NaN NaN NaN NaN NaN NaN NaN 171.24 1 166.36 165.86 166.86 -4.873 0 0 0 0.19652 1 33928 33928 0.073264 0 1 + 34503 15642 23201 23216 33940 33940 0.004683385225234815 PQLPEDKY 8 Unmodified _PQLPEDKY_ 0 0 0 ENSG00000212916|ENST00000418460|MAP10 ENSG00000212916|ENST00000418460|MAP10 ENSG00000212916|ENST00000418460|MAP10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.9861145019531 3 330.502797 988.486562 -0.43414 -0.00014349 0.6007 0.00019853 0.16656 5.5048E-05 330.5029431471874 21.902 0.31497 21.902 21.737 22.052 0 18 8 3 0 0 0 1.0248 1 3685 3685 1.4819 0 1 1516600 34504 7682 23202 23217 33941 33941 -0.00814225202043417 PQLQTTFTK 9 Unmodified _PQLQTTFTK_ 0 0 0 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.268798828125 2 532.292756 1062.57096 -0.19664 -0.00010467 -0.04722 -2.5135E-05 -0.24386 -0.0001298 532.292734306061 105.22 0.77666 100.95 100.53 101.31 -4.2638 53 21 3 0 0 0 0.15889 1 20693 20693 4.7159 0 1 6230700 34505 1752 23203 23218 33942 33942 0.042177256146942455 PQLRATMEAY 10 Unmodified _PQLRATMEAY_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2515258789062 2 590.294973 1178.57539 NaN NaN NaN NaN NaN NaN NaN 145.27 1 145.27 144.77 145.77 0 0 0 0 0.22588 1 29031 29031 8.7454 0.15213 1 34506 4162 23204 23219 33943 33943 -0.00675133234040004 PQLRHPLR 8 Unmodified _PQLRHPLR_ 0 0 0 REV__ABCC10|p.Q583Rfs*41|1|0.34|ENSG00000124574|chr6:43435885-43435885|C/-|frameshift_variant REV__ABCC10|p.Q583Rfs*41|1|0.34|ENSG00000124574|chr6:43435885-43435885|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.5416564941406 3 339.54192 1015.60393 NaN NaN NaN NaN NaN NaN NaN 27.374 1 25.592 25.092 26.092 -1.7821 0 0 0 0.23626 1 4862 4862 0.063987 0 1 + 34507 12898 23205 23220 33944 33944 0.09675397248065565 PQLRQLPQ 8 Unmodified _PQLRQLPQ_ 0 0 0 REV__nc|ENSG00000204463|P46379-5|BAG6 REV__nc|ENSG00000204463|P46379-5|BAG6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2628173828125 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 143.9 1 138.96 138.46 139.46 -4.9445 0 0 0 0.21486 1 27779 27779 11.64 0.81637 1 + 34508 19538 23206 23221 33945 33945 0.07092582399980074 PQLRRKRRR 9 Unmodified _PQLRRKRRR_ 0 0 0 REV__ENST00000391975.5_1_2:242194961-242195633:-|nuORF REV__ENST00000391975.5_1_2:242194961-242195633:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 633.8246459960938 2 633.410521 1264.80649 0.70791 0.0004484 3.0843 0.0019536 3.7922 0.002402 633.4106464927978 163.2 0.18015 158.02 157.95 158.13 -5.1878 5 4 2 0 0 0 0.80201 1 31738 31738 1.6526 0.17072 1 4536200 + 34509 21208 23207 23222 33946 33946 0.18467720373337215 PQLSAKPSFRN 11 Unmodified _PQLSAKPSFRN_ 0 0 0 REV__TDRD7|p.N797Sfs*58|1|0.03|ENSG00000196116|chr9:97480915-97480916|-/GTAATGTTAAT|frameshift_variant REV__TDRD7|p.N797Sfs*58|1|0.03|ENSG00000196116|chr9:97480915-97480916|-/GTAATGTTAAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.754638671875 2 622.840936 1243.66732 NaN NaN NaN NaN NaN NaN NaN 134.29 1 134.29 133.79 134.79 0 0 0 0 0.22914 1 26579 26579 8.9762 0.23084 1 + 34510 19217 23208 23223 33947 33947 0.05523293174655919 PQLTIKLLR 9 Unmodified _PQLTIKLLR_ 0 0 0 ENST00000394104.6_1_9:128117081-128117967:+|nuORF ENST00000394104.6_1_9:128117081-128117967:+|nuORF ENST00000394104.6_1_9:128117081-128117967:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.275146484375 2 541.358234 1080.70191 0.31002 0.00016783 -1.9301 -0.0010449 -1.6201 -0.00087704 541.8586238377617 140.19 0.1066 140.19 140.12 140.23 0 4 2 2 0 0 0 0.86627 1 27896 27896 9.3831 5.0539 1 1417300 34511 9401 23209 23224 33948 33948 0.1647916105339391 PQLTRSPWLY 10 Unmodified _PQLTRSPWLY_ 0 0 0 REV__FOXN3|p.Y117Tfs*21|1|0.14|ENSG00000053254|chr14:89412129-89412129|G/-|frameshift_variant REV__FOXN3|p.Y117Tfs*21|1|0.14|ENSG00000053254|chr14:89412129-89412129|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7779541015625 2 630.840405 1259.66626 NaN NaN NaN NaN NaN NaN NaN 91.928 1 87.834 87.334 88.334 -4.0946 0 0 0 0.22588 1 17509 17509 10.824 4.6181 1 + 34512 23549 23210 23225 33949 33949 0.04681078805765537 PQLVRPERA 9 Unmodified _PQLVRPERA_ 0 0 0 REV__ENST00000429635.1_1_12:47473412-47473730:-|nuORF REV__ENST00000429635.1_1_12:47473412-47473730:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.261474609375 2 533.311815 1064.60908 NaN NaN NaN NaN NaN NaN NaN 148.22 1 143.16 142.66 143.66 -5.0595 0 0 0 0.23508 1 28707 28707 6.7232 1.9672 1 + 34513 21602 23211 23226 33950 33950 0.07935656320046292 PQLYKKRKIS 10 Unmodified _PQLYKKRKIS_ 0 0 0 AluJr_dup72800|chr17:59204747-59205047:+|1.9610225923897493|0.1893768988027336|3.37|478.0|10|3|sense AluJr_dup72800|chr17:59204747-59205047:+|1.9610225923897493|0.1893768988027336|3.37|478.0|10|3|sense AluJr_dup72800|chr17:59204747-59205047:+|1.9610225923897493|0.1893768988027336|3.37|478.0|10|3|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7493896484375 2 630.892972 1259.77139 NaN NaN NaN NaN NaN NaN NaN 148.55 1 143.5 143 144 -5.0595 0 0 0 0.22588 1 28773 28773 6.2058 0.9089 1 34514 130 23212 23227 33951 33951 0.151896200021838 PQLYMCMVP 9 Unmodified _PQLYMCMVP_ 0 0 0 REV__nc|ENSG00000204700|O76002|OR2J2 REV__nc|ENSG00000204700|O76002|OR2J2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2583618164062 2 541.247591 1080.48063 NaN NaN NaN NaN NaN NaN NaN 138.76 1 138.76 138.26 139.26 0 0 0 0 0.23508 1 27562 27562 7.2892 0.56607 1 + 34515 19562 23213 23228 33952 33952 -0.056391063012142695 PQLYQMSEHQ 10 Unmodified _PQLYQMSEHQ_ 0 0 0 ENST00000607121.5_1_3:50403293-50405431:+|nuORF ENST00000607121.5_1_3:50403293-50405431:+|nuORF ENST00000607121.5_1_3:50403293-50405431:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7744140625 2 630.787512 1259.56047 NaN NaN NaN NaN NaN NaN NaN 137.97 1 137.97 137.47 138.47 0 0 0 0 0.22588 1 27380 27380 6.2058 0.47393 1 34516 11754 23214 23229 33953 33953 -0.05892625102023885 PQMPGHSGP 9 Unmodified _PQMPGHSGP_ 0 0 0 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7486877441406 2 454.20817 906.401786 NaN NaN NaN NaN NaN NaN NaN 55.012 1 55.012 54.512 55.512 0 0 0 0 0.23508 1 10493 10493 7.2892 1.5288 1 34517 5298 23215 23230 33954 33954 -0.05515874219634043 PQNGKQDPP 9 Unmodified _PQNGKQDPP_ 0 0 0 REV__ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant REV__ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25531005859375 2 490.743431 979.472308 0.1293 6.3454E-05 -0.2043 -0.00010026 -0.074997 -3.6804E-05 490.7432688347111 17.922 1.0665 17.922 17.445 18.511 0 75 29 4 0 0 0 0.19359 1 2877 2877 39.95 0 1 19324000 + 34518 13813 23216 23231 33955 33955 -0.018248776303494196 PQNGKQDPP 9 Unmodified _PQNGKQDPP_ 0 0 0 REV__ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant REV__ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25543212890625 2 490.743431 979.472308 -0.24352 -0.00011951 0.35186 0.00017267 0.10835 5.317E-05 490.74354163273125 19.285 0.94827 17.96 17.398 18.346 -1.3251 74 26 4 0 0 0 0.27865 1 2909 2909 49.933 3.912 1 16918000 + 34519 13813 23216 23231 33956 33956 -0.018248776303494196 PQPAERVDPA 10 Unmodified _PQPAERVDPA_ 0 0 0 ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.280517578125 2 540.277638 1078.54072 0.31248 0.00016883 -0.53412 -0.00028857 -0.22164 -0.00011975 540.277367880823 29.864 0.55454 29.864 29.61 30.164 0 26 15 3 0 0 0 0.68338 1 5350 5350 12.873 1.3779 1 1763000 34520 2291 23217 23232 33957 33957 0.004593669495079666 PQPHGPPQV 9 Unmodified _PQPHGPPQV_ 0 0 0 REV__ENST00000487659.1_1_1:1342042-1342597:-|nuORF REV__ENST00000487659.1_1_1:1342042-1342597:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72320556640625 2 478.751059 955.487565 NaN NaN NaN NaN NaN NaN NaN 149.82 1 145.08 144.58 145.58 -4.7323 0 0 0 0.20628 1 29750 29750 21.747 4.8044 1 + 34521 22259 23218 23233 33958 33958 0.008040339575245525 PQPHPAAG 8 Unmodified _PQPHPAAG_ 0 0 0 ENST00000602034.1_1_19:39408732-39410638:-|nuORF ENST00000602034.1_1_19:39408732-39410638:-|nuORF ENST00000602034.1_1_19:39408732-39410638:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71240234375 2 387.698295 773.382037 NaN NaN NaN NaN NaN NaN NaN 52.733 1 49.849 49.349 50.349 -2.8837 0 0 0 0.22625 1 10040 10040 9.544 3.3521 1 34522 11710 23219 23234 33959 33959 -0.013718821680981819 PQPHQPAPPP 10 Unmodified _PQPHQPAPPP_ 0 0 0 REV__ENST00000483773.1_1_1:224301900-224321920:+|nuORF REV__ENST00000483773.1_1_1:224301900-224321920:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2694091796875 2 533.277441 1064.54033 NaN NaN NaN NaN NaN NaN NaN 21.935 1 20.461 19.961 20.961 -1.4742 0 0 0 0.22569 1 3730 3730 15.847 2.3393 1 + 34523 16748 23220 23235 33960 33960 0.01063992020317528 PQPHQPAPPP 10 Unmodified _PQPHQPAPPP_ 0 0 0 REV__ENST00000483773.1_1_1:224301900-224321920:+|nuORF REV__ENST00000483773.1_1_1:224301900-224321920:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2794799804688 2 533.277441 1064.54033 NaN NaN NaN NaN NaN NaN NaN 22.186 1 20.465 19.965 20.965 -1.7211 0 0 0 0.22569 1 3510 3510 15.847 3.3156 1 + 34524 16748 23220 23235 33961 33961 0.01063992020317528 PQPIRSYVEDG 11 Unmodified _PQPIRSYVEDG_ 0 0 0 REV__ENSG00000146070|ENST00000274793|PLA2G7 REV__ENSG00000146070|ENST00000274793|PLA2G7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.75390625 2 630.814584 1259.61462 NaN NaN NaN NaN NaN NaN NaN 145.79 1 140.68 140.18 141.18 -5.1108 0 0 0 0.23018 1 28182 28182 8.1555 0.54658 1 + 34525 16868 23221 23236 33962 33962 -0.004807096788226772 PQPKPQPQPQP 11 Unmodified _PQPKPQPQPQP_ 0 0 0 REV__ENSG00000139289|ENST00000266671|PHLDA1 REV__ENSG00000139289|ENST00000266671|PHLDA1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 621.2284545898438 2 621.335487 1240.65642 NaN NaN NaN NaN NaN NaN NaN 54.951 1 52.067 51.567 52.567 -2.8837 0 0 0 0.22501 1 10501 10501 12.241 2.1667 1 + 34526 16511 23222 23237 33963 33963 0.04571890800366418 PQPLLVKLKQP 11 Unmodified _PQPLLVKLKQP_ 0 0 0 REV__BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant REV__BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.753662109375 2 630.905548 1259.79654 NaN NaN NaN NaN NaN NaN NaN 137.58 1 132.66 132.16 133.16 -4.9216 0 0 0 0.2367 1 26448 26448 2.9952 0 1 + 34527 13201 23223 23238 33964 33964 0.17703674804738512 PQPLPIHVGE 10 Unmodified _PQPLPIHVGE_ 0 0 0 nc|ENSG00000128052|P35968-2|KDR;nc|ENSG00000128052|P35968-3|KDR;KDR|p.T1238Hfs*7|1|0.51|ENSG00000128052|chr4:55082586-55082586|T/-|frameshift_variant;ENSG00000128052|ENST00000263923|KDR nc|ENSG00000128052|P35968-2|KDR nc|ENSG00000128052|P35968-2|KDR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.789794921875 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 133.03 1 128.18 127.68 128.68 -4.8527 0 0 0 0.22583 1 25555 25555 13.906 5.3128 1 34528 3507 23224 23239 33965 33965 0.04757431851612637 PQPPLRPQSQP 11 Unmodified _PQPPLRPQSQP_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.766357421875 2 622.840936 1243.66732 NaN NaN NaN NaN NaN NaN NaN 134.35 1 134.35 133.85 134.85 0 0 0 0 0.22595 1 26592 26592 11.495 2.7493 1 34529 1325 23225 23240 33966 33966 0.055232931746331815 PQPQAPAHLQ 10 Unmodified _PQPQAPAHLQ_ 0 0 0 REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7861328125 2 543.788173 1085.56179 0.85879 0.000467 -0.23196 -0.00012613 0.62684 0.00034087 543.7878355974462 22.453 0.34084 20.979 20.763 21.104 -1.4742 12 9 2 0 0 0 0.53093 1 3812 3812 0.043787 0 1 644610 + 34530 14344 23226 23241 33967 33967 0.02243377049035189 PQPRPPQGPL 10 Unmodified _PQPRPPQGPL_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.770751953125 2 543.806365 1085.59818 0.34288 0.00018646 -0.9159 -0.00049807 -0.57302 -0.00031161 543.8059880517252 139.64 0.49071 134.79 134.49 134.98 -4.8492 21 13 2 0 0 0 0.6817 1 26870 26870 13.042 0 1 1301000 34531 4590 23227 23242 33968 33968 0.05880253945747427 PQPSCCCCCC 10 Unmodified _PQPSCCCCCC_ 0 0 0 ENST00000483722.1_1_6:41166134-41168799:-|nuORF ENST00000483722.1_1_6:41166134-41168799:-|nuORF ENST00000483722.1_1_6:41166134-41168799:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6788940429688 2 523.638179 1045.26181 NaN NaN NaN NaN NaN NaN NaN 94.248 1 90.258 89.758 90.758 -3.9907 0 0 0 0.22588 1 18466 18466 1.6526 1.1943 1 34532 10418 23228 23243 33969 33969 -0.25901525198196396 PQPSCCCCCC 10 Unmodified _PQPSCCCCCC_ 0 0 0 ENST00000483722.1_1_6:41166134-41168799:-|nuORF ENST00000483722.1_1_6:41166134-41168799:-|nuORF ENST00000483722.1_1_6:41166134-41168799:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7003173828125 2 523.638179 1045.26181 NaN NaN NaN NaN NaN NaN NaN 149.61 1 144.88 144.38 145.38 -4.7323 0 0 0 0.22588 1 29709 29709 1.3295 1.3295 1 34533 10418 23228 23243 33970 33970 -0.25901525198196396 PQPSMPHSS 9 Unmodified _PQPSMPHSS_ 0 0 0 DNAJC6|p.K798Rfs*6|1|0.2|ENSG00000116675|chr1:65408709-65408709|A/-|frameshift_variant;nc|ENSG00000116675|O75061-4|DNAJC6;nc|ENSG00000116675|O75061|DNAJC6;ENSG00000116675|ENST00000371069|DNAJC6 DNAJC6|p.K798Rfs*6|1|0.2|ENSG00000116675|chr1:65408709-65408709|A/-|frameshift_variant DNAJC6|p.K798Rfs*6|1|0.2|ENSG00000116675|chr1:65408709-65408709|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1463623046875 3 323.148248 966.422915 NaN NaN NaN NaN NaN NaN NaN 121.53 1 116.84 116.34 117.34 -4.6873 0 0 0 0.23508 1 23334 23334 1.0715 0.67075 1 34534 876 23229 23244 33971 33971 -0.06163908910775717 PQPSQVLPAE 10 Unmodified _PQPSQVLPAE_ 0 0 0 ENST00000563983.5_1_16:89788975-89789592:+|nuORF;ENST00000562530.5_1_16:89789167-89789974:+|nuORF ENST00000563983.5_1_16:89788975-89789592:+|nuORF ENST00000563983.5_1_16:89788975-89789592:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2852783203125 2 533.282389 1064.55022 0.75738 0.0004039 1.3443 0.00071688 2.1017 0.0011208 533.2827773165963 107.28 0.71266 103.15 102.84 103.56 -4.135 34 20 3 0 0 0 0.44731 1 20594 20594 27.629 5.8822 1 2144800 34535 11317 23230 23245 33972 33972 0.020531352350417365 PQPTARAAR 9 Unmodified _PQPTARAAR_ 0 0 0 ENST00000321276.7_1_2:223289259-223339308:+|nuORF ENST00000321276.7_1_2:223289259-223339308:+|nuORF ENST00000321276.7_1_2:223289259-223339308:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.168701171875 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 77.947 1 77.947 77.447 78.447 0 0 0 0 0.23508 1 15165 15165 1.0715 0 1 34536 8717 23231 23246 33973 33973 0.05130527597418677 PQPTARAAR 9 Unmodified _PQPTARAAR_ 0 0 0 ENST00000321276.7_1_2:223289259-223339308:+|nuORF ENST00000321276.7_1_2:223289259-223339308:+|nuORF ENST00000321276.7_1_2:223289259-223339308:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1847839355469 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 77.68 1 74.021 73.521 74.521 -3.6588 0 0 0 0.23508 1 14794 14794 1.0715 0 1 34537 8717 23231 23246 33974 33974 0.05130527597418677 PQPTFTEKV 9 Unmodified _PQPTFTEKV_ 0 0 0 nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107 nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-3|NUP107 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6782836914062 2 523.779482 1045.54441 NaN NaN NaN NaN NaN NaN NaN 161.75 1 156.56 156.06 157.06 -5.1878 0 0 0 0.23277 1 31394 31394 13.906 1.3745 1 34538 2628 23232 23247 33975 33975 0.02346036723361067 PQPVGVPNESQ 11 Unmodified _PQPVGVPNESQ_ 0 0 0 nc|ENSG00000082175|P06401-4|PGR;nc|ENSG00000082175|P06401-3|PGR;nc|ENSG00000082175|P06401-2|PGR;ENSG00000082175|ENST00000325455|PGR nc|ENSG00000082175|P06401-4|PGR nc|ENSG00000082175|P06401-4|PGR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32958984375 2 576.288202 1150.56185 NaN NaN NaN NaN NaN NaN NaN 139.84 1 134.89 134.39 135.39 -4.952 0 0 0 0.22683 1 26908 26908 10.8 2.0541 1 34539 1636 23233 23248 33976 33976 -0.0074066774163839 PQPVHVRF 8 Unmodified _PQPVHVRF_ 0 0 0 REV__nc|ENSG00000131196|O95644-17|NFATC1 REV__nc|ENSG00000131196|O95644-17|NFATC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2593688964844 2 490.277244 978.539935 NaN NaN NaN NaN NaN NaN NaN 144.84 1 140.17 139.67 140.67 -4.6694 0 0 0 0.20896 1 28694 28694 18.135 1.1927 1 + 34540 16061 23234 23249 33977 33977 0.04980617091132444 PQPVRIRTK 9 Unmodified _PQPVRIRTK_ 0 0 0 REV__ENST00000354955.4_1_1:203320311-203320362:-|nuORF REV__ENST00000354955.4_1_1:203320311-203320362:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7926635742188 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.2976 1 9.2976 8.7976 9.7976 0 0 0 0 0.23508 1 1060 1060 0.52476 0 1 + 34541 20785 23235 23250 33978 33978 0.12892222108075657 PQQHRLFR 8 Unmodified _PQQHRLFR_ 0 0 0 KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94;ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;KIAA0195|p.S895Pfs*13|5|0.32|ENSG00000177728|chr17:75494982-75494982|C/-|frameshift_variant KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant KIAA0195|p.H1145Ifs*95|1|0.14|ENSG00000177728|chr17:75497800-75497800|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2743530273438 2 541.304324 1080.5941 NaN NaN NaN NaN NaN NaN NaN 159.71 1 154.92 154.42 155.42 -4.7952 0 0 0 0.21486 1 31756 31756 8.5933 0.43775 1 34542 6534 23236 23251 33979 33979 0.05702209242713252 PQQIKRRLL 9 Unmodified _PQQIKRRLL_ 0 0 0 REV__USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant REV__USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32373046875 2 576.372207 1150.72986 NaN NaN NaN NaN NaN NaN NaN 158.43 1 153.63 153.13 154.13 -4.7952 0 0 0 0.23508 1 31503 31503 1.8442 0 1 + 34543 25523 23237 23252 33980 33980 0.16052484033502878 PQQLPQPKLM 10 Unmodified _PQQLPQPKLM_ 0 0 0 REV__ATXN2L|p.T504Hfs*33|1|0.12|ENSG00000168488|chr16:28832387-28832388|-/C|frameshift_variant;REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2708129882812 2 590.331359 1178.64816 NaN NaN NaN NaN NaN NaN NaN 137.14 1 132.3 131.8 132.8 -4.84 0 0 0 0.22588 1 26419 26419 6.2058 0.47393 1 + 34544 23076;13160 23238 23253 33981 33981 0.06598620559361734 PQQPHSLL 8 Unmodified _PQQPHSLL_ 0 0 0 REV__UNC13D|p.R11P|1|0.48|ENSG00000092929|chr17:75844306-75844306|C/G|missense_variant REV__UNC13D|p.R11P|1|0.48|ENSG00000092929|chr17:75844306-75844306|C/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.235107421875 2 460.253434 918.492316 -0.068615 -3.158E-05 0.82375 0.00037913 0.75513 0.00034755 460.25358560448325 78.564 0.88937 75.1 74.713 75.602 -3.4633 35 24 3 0 0 0 0.81042 1 15341 15341 11.64 0 1 1576300 + 34545 25516 23239 23254 33982 33982 0.029809181002860896 PQQQFPKA 8 Unmodified _PQQQFPKA_ 0 0 0 nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185 nc|ENSG00000147394|O15231-4|ZNF185 nc|ENSG00000147394|O15231-4|ZNF185 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1701965332031 3 315.171382 942.492316 NaN NaN NaN NaN NaN NaN NaN 114.28 1 109.8 109.3 110.3 -4.4726 0 0 0 0.21486 1 22521 22521 1.4819 0.41044 1 34546 4699 23240 23255 33983 33983 0.018769181002767255 PQQRPRLQE 9 Unmodified _PQQRPRLQE_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2;TSPYL2|p.S127Afs*20|2|0.38|ENSG00000184205|chrX:53082870-53082870|G/-|frameshift_variant;TSPYL2|p.I84Sfs*63|2|0.12|ENSG00000184205|chrX:53082741-53082741|G/-|frameshift_variant ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3153076171875 2 576.317628 1150.6207 NaN NaN NaN NaN NaN NaN NaN 168.07 1 163.12 162.62 163.62 -4.948 0 0 0 0.21844 1 33113 33113 18.146 2.8979 1 34547 6894 23241 23256 33984 33984 0.05141853343366165 PQQRPSVV 8 Unmodified _PQQRPSVV_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.175537109375 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 78.694 1 78.694 78.194 79.194 0 0 0 0 0.21486 1 15315 15315 0.40072 0 1 34548 219 23242 23257 33985 33985 0.044843204745689036 PQQRPSVV 8 Unmodified _PQQRPSVV_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.1752624511719 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 98.198 1 98.198 97.698 98.698 0 0 0 0 0.21486 1 19247 19247 0.40072 0 1 34549 219 23242 23257 33986 33986 0.044843204745689036 PQQRPSVV 8 Unmodified _PQQRPSVV_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.1908874511719 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 103.47 1 99.25 98.75 99.75 -4.2183 0 0 0 0.21486 1 20344 20344 1.6526 0 1 34550 219 23242 23257 33987 33987 0.044843204745689036 PQQRPSVV 8 Unmodified _PQQRPSVV_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.17523193359375 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 104.91 1 100.56 100.06 101.06 -4.346 0 0 0 0.21486 1 20106 20106 1.6526 0 1 34551 219 23242 23257 33988 33988 0.044843204745689036 PQQRPSVV 8 Unmodified _PQQRPSVV_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.2178039550781 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 108.17 1 103.76 103.26 104.26 -4.4121 0 0 0 0.21486 1 20753 20753 1.6526 0 1 34552 219 23242 23257 33989 33989 0.044843204745689036 PQQRPSVV 8 Unmodified _PQQRPSVV_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.1546325683594 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 109.2 1 104.74 104.24 105.24 -4.4518 0 0 0 0.21486 1 20956 20956 1.6526 0 1 34553 219 23242 23257 33990 33990 0.044843204745689036 PQRALPPGA 9 Unmodified _PQRALPPGA_ 0 0 0 CHST2|p.R242Afs*60|1|0.17|ENSG00000175040|chr3:143121534-143121534|G/-|frameshift_variant;CHST2|p.R242Afs*92|1|0.41|ENSG00000175040|chr3:143121533-143121534|-/G|frameshift_variant;ENSG00000175040|ENST00000309575|CHST2 CHST2|p.R242Afs*60|1|0.17|ENSG00000175040|chr3:143121534-143121534|G/-|frameshift_variant CHST2|p.R242Afs*60|1|0.17|ENSG00000175040|chr3:143121534-143121534|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7608642578125 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 145.62 1 140.95 140.45 141.45 -4.6694 0 0 0 0.19451 1 28866 28866 1.2148 0.36989 1 34554 557 23243 23258 33991 33991 0.051766243371730525 PQRCLNPVPA 10 Unmodified _PQRCLNPVPA_ 0 0 0 nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7919311523438 2 547.792401 1093.57025 NaN NaN NaN NaN NaN NaN NaN 165.59 1 160.64 160.14 161.14 -4.9484 0 0 0 0.22588 1 32367 32367 10.824 2.0785 1 34555 12248 23244 23259 33992 33992 0.02720607694004684 PQRFSAPQR 9 Unmodified _PQRFSAPQR_ 0 0 0 REV__ENST00000540757.6_1_12:4714220-4719347:+|nuORF REV__ENST00000540757.6_1_12:4714220-4719347:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.792724609375 2 543.793789 1085.57303 NaN NaN NaN NaN NaN NaN NaN 17.23 1 15.958 15.458 16.458 -1.2722 0 0 0 0.23508 1 2524 2524 3.9444 0.66309 1 + 34556 22862 23245 23260 33993 33993 0.03366199143169979 PQRGRQGY 8 Unmodified _PQRGRQGY_ 0 0 0 ENST00000565624.1_1_16:88500486-88500762:+|nuORF ENST00000565624.1_1_16:88500486-88500762:+|nuORF ENST00000565624.1_1_16:88500486-88500762:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2541809082031 2 481.251757 960.488962 NaN NaN NaN NaN NaN NaN NaN 63.32 1 59.904 59.404 60.404 -3.4158 0 0 0 0.21323 1 11826 11826 14.582 1.0738 1 34557 11359 23246 23261 33994 33994 0.007136680462735967 PQRKSQLQP 9 Unmodified _PQRKSQLQP_ 0 0 0 NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2581787109375 2 541.309272 1080.60399 NaN NaN NaN NaN NaN NaN NaN 151.08 1 151.08 150.58 151.58 0 0 0 0 0.23508 1 30252 30252 13.042 1.5478 1 34558 12689 23247 23262 33995 33995 0.06691352457414723 PQRKSQLQP 9 Unmodified _PQRKSQLQP_ 0 0 0 NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2818603515625 2 541.309272 1080.60399 NaN NaN NaN NaN NaN NaN NaN 156.81 1 151.54 151.04 152.04 -5.2712 0 0 0 0.22962 1 30419 30419 14.838 0.93222 1 34559 12689 23247 23262 33996 33996 0.06691352457414723 PQRLPLQSR 9 Unmodified _PQRLPLQSR_ 0 0 0 nc|ENSG00000211456|Q9NTJ5-2|SACM1L nc|ENSG00000211456|Q9NTJ5-2|SACM1L nc|ENSG00000211456|Q9NTJ5-2|SACM1L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7742309570312 2 547.825089 1093.63563 NaN NaN NaN NaN NaN NaN NaN 15.606 1 14.391 13.891 14.891 -1.2159 0 0 0 0.23508 1 2413 2413 3.2813 0.97858 1 34560 12570 23248 23263 33997 33997 0.0925534521136342 PQRNFYPA 8 Unmodified _PQRNFYPA_ 0 0 0 KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 496.66119384765625 2 496.751059 991.487565 NaN NaN NaN NaN NaN NaN NaN 143.95 1 143.95 143.45 144.45 0 0 0 0 0.21486 1 28747 28747 9.3474 0 1 34561 993 23249 23264 33998 33998 -0.008519660424894937 PQRNWARAS 9 Unmodified _PQRNWARAS_ 0 0 0 REV__ENST00000467673.5_1_1:39571193-39720158:+|nuORF REV__ENST00000467673.5_1_1:39571193-39720158:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78466796875 2 543.283589 1084.55262 -0.42286 -0.00022974 -1.6425 -0.00089235 -2.0654 -0.0011221 543.2821034560502 17.502 0.17421 16.23 16.109 16.283 -1.2722 7 4 2 0 0 0 0.67531 1 2579 2579 7.9102 1.187 1 443070 + 34562 21984 23250 23265 33999 33999 0.013730284833627593 PQRNWARAS 9 Unmodified _PQRNWARAS_ 0 0 0 REV__ENST00000467673.5_1_1:39571193-39720158:+|nuORF REV__ENST00000467673.5_1_1:39571193-39720158:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.283589 1084.55262 0.0049733 2.7019E-06 -2.0158 -0.0010952 -2.0109 -0.0010925 543.2809096674227 17.497 0.20886 16.186 16.03 16.239 -1.3109 -0.02227 -0.00020148 NaN 7.9102 12 5 3 NaN NaN NaN NaN 0 NaN NaN 0 599090 + 34563 21984 23250 23265 0.013730284833627593 PQRNWARAS 9 Unmodified _PQRNWARAS_ 0 0 0 REV__ENST00000467673.5_1_1:39571193-39720158:+|nuORF REV__ENST00000467673.5_1_1:39571193-39720158:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.283589 1084.55262 -0.42286 -0.00022974 -1.6425 -0.00089235 -2.0654 -0.0011221 543.2821034560502 17.502 0.17421 16.23 16.109 16.283 -1.2722 0.02227 0.00020416 NaN 7.9102 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 443070 + 34564 21984 23250 23265 0.013730284833627593 PQRQRRRRRQQ 11 Unmodified _PQRQRRRRRQQ_ 0 0 0 ENST00000338745.10_3_3:18466531-18466693:-|nuORF;ENST00000450898.1_1_3:18465198-18466693:-|nuORF ENST00000338745.10_3_3:18466531-18466693:-|nuORF ENST00000338745.10_3_3:18466531-18466693:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27734375 3 522.308711 1563.9043 NaN NaN NaN NaN NaN NaN NaN 160.02 1 154.79 154.29 155.29 -5.2299 0 0 0 0.22632 1 31062 31062 0.094841 0 1 34565 8833 23251 23266 34000 34000 0.144908772314011 PQRRAVRRWML 11 Unmodified _PQRRAVRRWML_ 0 0 0 NAB1|p.A182Rfs*34|1|0.39|ENSG00000138386|chr2:190659715-190659715|C/-|frameshift_variant NAB1|p.A182Rfs*34|1|0.39|ENSG00000138386|chr2:190659715-190659715|C/-|frameshift_variant NAB1|p.A182Rfs*34|1|0.39|ENSG00000138386|chr2:190659715-190659715|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2578430175781 3 490.285856 1467.83574 NaN NaN NaN NaN NaN NaN NaN 79.175 1 75.37 74.87 75.87 -3.8048 0 0 0 0.22632 1 15018 15018 0.58532 0 1 34566 12195 23252 23267 34001 34001 0.12053496607313718 PQRRLRLVL 9 Unmodified _PQRRLRLVL_ 0 0 0 REV__ENST00000272091.7_1_1:226180251-226183014:-|nuORF REV__ENST00000272091.7_1_1:226180251-226183014:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.314208984375 2 575.880199 1149.74584 NaN NaN NaN NaN NaN NaN NaN 67.257 1 67.257 66.757 67.757 0 0 0 0 0.23508 1 12999 12999 2.0598 0 1 + 34567 20274 23253 23268 34002 34002 0.1769619027038516 PQRRRQWRDVS 11 Unmodified _PQRRRQWRDVS_ 0 0 0 REV__BAG3|p.G25Dfs*186|1|0.23|ENSG00000151929|chr10:119651742-119651742|C/-|frameshift_variant REV__BAG3|p.G25Dfs*186|1|0.23|ENSG00000151929|chr10:119651742-119651742|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4031982421875 2 742.403089 1482.79163 NaN NaN NaN NaN NaN NaN NaN 30.026 1 28.133 27.633 28.633 -1.8928 0 0 0 0.23698 1 5131 5131 1.3295 0 1 + 34568 13175 23254 23269 34003 34003 0.069541837146744 PQRRRQWRDVS 11 Unmodified _PQRRRQWRDVS_ 0 0 0 REV__BAG3|p.G25Dfs*186|1|0.23|ENSG00000151929|chr10:119651742-119651742|C/-|frameshift_variant REV__BAG3|p.G25Dfs*186|1|0.23|ENSG00000151929|chr10:119651742-119651742|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.4039916992188 2 742.403089 1482.79163 NaN NaN NaN NaN NaN NaN NaN 161.46 1 156.21 155.71 156.71 -5.2519 0 0 0 0.23698 1 31336 31336 1.1933 0 1 + 34569 13175 23254 23269 34004 34004 0.069541837146744 PQRRWRLRQGL 11 Unmodified _PQRRWRLRQGL_ 0 0 0 ENST00000472291.1_1_22:39928247-39928743:-|nuORF ENST00000472291.1_1_22:39928247-39928743:-|nuORF ENST00000472291.1_1_22:39928247-39928743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 733.4361572265625 2 733.434193 1464.85383 NaN NaN NaN NaN NaN NaN NaN 43.17 1 40.42 39.92 40.92 -2.7496 0 0 0 0.23698 1 7788 7788 1.3295 0.13619 1 34570 10223 23255 23270 34005 34005 0.13999954853693453 PQRRYRRNFNY 11 Unmodified _PQRRYRRNFNY_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4113159179688 2 785.410914 1568.80728 NaN NaN NaN NaN NaN NaN NaN 109.12 1 109.12 108.62 109.62 0 0 0 0 0.2367 1 21453 21453 2.9952 1.6657 1 34571 1365 23256 23271 34006 34006 0.04562470231758198 PQRRYRRNFNY 11 Unmodified _PQRRYRRNFNY_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4114990234375 2 785.410914 1568.80728 NaN NaN NaN NaN NaN NaN NaN 103.88 1 99.53 99.03 100.03 -4.346 0 0 0 0.23698 1 19899 19899 1.1933 0.88631 1 34572 1365 23256 23271 34007 34007 0.04562470231758198 PQRRYRRNFNY 11 Unmodified _PQRRYRRNFNY_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4088134765625 2 785.410914 1568.80728 NaN NaN NaN NaN NaN NaN NaN 115.42 1 110.86 110.36 111.36 -4.555 0 0 0 0.23698 1 22159 22159 1.3295 0.9789 1 34573 1365 23256 23271 34008 34008 0.04562470231758198 PQRRYRRNFNY 11 Unmodified _PQRRYRRNFNY_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3950805664062 2 785.410914 1568.80728 NaN NaN NaN NaN NaN NaN NaN 98.091 1 94.135 93.635 94.635 -3.9564 0 0 0 0.23698 1 18826 18826 1.3295 0 1 34574 1365 23256 23271 34009 34009 0.04562470231758198 PQRRYRRNFNY 11 Unmodified _PQRRYRRNFNY_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4080200195312 2 785.410914 1568.80728 NaN NaN NaN NaN NaN NaN NaN 108.23 1 104.09 103.59 104.59 -4.135 0 0 0 0.23698 1 20823 20823 1.3295 0.9789 1 34575 1365 23256 23271 34010 34010 0.04562470231758198 PQRRYRRNFNY 11 Unmodified _PQRRYRRNFNY_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4091186523438 2 785.410914 1568.80728 NaN NaN NaN NaN NaN NaN NaN 178.55 1 173.64 173.14 174.14 -4.9088 0 0 0 0.23698 1 35619 35619 0.35063 0.043601 1 34576 1365 23256 23271 34011 34011 0.04562470231758198 PQRYIFVRRL 10 Unmodified _PQRYIFVRRL_ 0 0 0 REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1 REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 674.4058837890625 2 674.404038 1346.79352 NaN NaN NaN NaN NaN NaN NaN 27.516 1 25.733 25.233 26.233 -1.7821 0 0 0 0.22588 1 4893 4893 1.6526 0.17072 1 + 34577 15623 23257 23272 34012 34012 0.13399844470586686 PQSIDQASLGA 11 Unmodified _PQSIDQASLGA_ 0 0 0 REV__ENST00000468680.1_1_3:195597236-195599448:-|nuORF REV__ENST00000468680.1_1_3:195597236-195599448:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77490234375 2 543.774928 1085.5353 -0.22307 -0.0001213 0.29589 0.0001609 0.072821 3.9598E-05 543.7751097387014 16.172 0.52327 14.956 14.727 15.25 -1.2159 43 14 4 0 0 0 0.59457 1 2564 2564 18.373 0.22675 1 57030000 + 34578 14152 23258 23273 34013 34013 -0.004043566329301029 PQSIDQASLGA 11 Unmodified _PQSIDQASLGA_ 0 0 0 REV__ENST00000468680.1_1_3:195597236-195599448:-|nuORF REV__ENST00000468680.1_1_3:195597236-195599448:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7752075195312 2 543.774928 1085.5353 -0.50409 -0.00027411 0.59892 0.00032568 0.094821 5.1561E-05 543.7752514473891 16.228 0.44431 15.006 14.819 15.263 -1.2219 34 12 4 0 0 0 0.53127 1 2355 2355 21.59 8.5477 1 21071000 + 34579 14152 23258 23273 34014 34014 -0.004043566329301029 PQSKSSLYTA 10 Unmodified _PQSKSSLYTA_ 0 0 0 REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.26806640625 2 541.279846 1080.54514 0.35569 0.00019253 0.17428 9.4333E-05 0.52997 0.00028686 541.2798883192773 31.624 0.32188 29.597 29.372 29.694 -2.0264 11 8 2 0 0 0 0.59928 1 5471 5471 19.257 1.1106 1 553590 + 34580 13356 23259 23274 34015 34015 0.008088313724556428 PQSLRSSY 8 Unmodified _PQSLRSSY_ 0 0 0 ENSG00000188649|ENST00000646931|CC2D2B ENSG00000188649|ENST00000646931|CC2D2B ENSG00000188649|ENST00000646931|CC2D2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.18011474609375 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 58.461 1 55.256 54.756 55.756 -3.2052 0 0 0 0.21486 1 10911 10911 3.2813 1.6287 1 34581 7186 23260 23275 34016 34016 -0.004279761419979877 PQSSCCCCCL 10 Unmodified _PQSSCCCCCL_ 0 0 0 REV__ENSG00000180758|ENST00000377411|GPR157 REV__ENSG00000180758|ENST00000377411|GPR157 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6839599609375 2 523.665251 1045.31595 NaN NaN NaN NaN NaN NaN NaN 139.86 1 139.86 139.36 140.36 0 0 0 0 0.22588 1 27817 27817 1.6526 1.0511 1 + 34582 18697 23261 23276 34017 34017 -0.20489609774995188 PQSSCCCCCL 10 Unmodified _PQSSCCCCCL_ 0 0 0 REV__ENSG00000180758|ENST00000377411|GPR157 REV__ENSG00000180758|ENST00000377411|GPR157 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6788940429688 2 523.665251 1045.31595 NaN NaN NaN NaN NaN NaN NaN 144.92 1 139.98 139.48 140.48 -4.9445 0 0 0 0.22588 1 28006 28006 1.6526 1.0511 1 + 34583 18697 23261 23276 34018 34018 -0.20489609774995188 PQTDSCNCDC 10 Unmodified _PQTDSCNCDC_ 0 0 0 REV__ITGB7|p.L473R|1|0.08|ENSG00000139626|chr12:53193792-53193792|A/C|missense_variant REV__ITGB7|p.L473R|1|0.08|ENSG00000139626|chr12:53193792-53193792|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7695922851562 2 543.170266 1084.32598 0.33608 0.00018255 -1.1063 -0.00060092 -0.77024 -0.00041837 543.168861973497 134.94 0.17282 134.94 134.85 135.02 0 8 4 2 0 0 0 0.91149 1 26725 26725 0.40072 0.40072 1 2483400 + 34584 16527 23262 23277 34019 34019 -0.21281007244419925 PQTMARAPPP 10 Unmodified _PQTMARAPPP_ 0 0 0 REV__ENST00000491270.1_1_10:76995548-76995725:-|nuORF REV__ENST00000491270.1_1_10:76995548-76995725:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.279541015625 2 533.279126 1064.5437 NaN NaN NaN NaN NaN NaN NaN 20.855 1 20.855 20.355 21.355 0 0 0 0 0.22588 1 3467 3467 7.2892 0 1 + 34585 22312 23263 23278 34020 34020 0.01400918802664819 PQTQSWRR 8 Unmodified _PQTQSWRR_ 0 0 0 ENST00000317276.8_1_17:8049996-8050217:-|nuORF ENST00000317276.8_1_17:8049996-8050217:-|nuORF ENST00000317276.8_1_17:8049996-8050217:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.2415771484375 3 353.521185 1057.54173 -1.814 -0.00064128 -0.058978 -2.085E-05 -1.873 -0.00066213 353.5211459711327 18.658 0.63166 17.143 16.95 17.582 -1.5148 23 14 2 0 0 0 1.0267 1 2764 2764 1.4819 0 1 1106300 34586 8686 23264 23279 34021 34021 0.015256261090826229 PQTQVEPQAP 10 Unmodified _PQTQVEPQAP_ 0 0 0 REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7774658203125 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 50.175 1 50.175 49.675 50.675 0 0 0 0 0.22588 1 9497 9497 10.151 1.5573 1 + 34587 13202 23265 23280 34022 34022 -0.0026405277033063612 PQTRQRQPI 9 Unmodified _PQTRQRQPI_ 0 0 0 REV__ENST00000504490.2_1_4:113279997-113280900:+|nuORF REV__ENST00000504490.2_1_4:113279997-113280900:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2150573730469 3 375.215873 1122.62579 -0.036466 -1.3683E-05 -0.436 -0.00016359 -0.47246 -0.00017728 375.21574064796795 41.253 0.37842 38.714 38.488 38.866 -2.5398 17 10 2 0 0 0 0.6797 1 7432 7432 7.609 0 1 945110 + 34588 22463 23266 23281 34023 34023 0.06938157205991047 PQTWHVFY 8 Unmodified _PQTWHVFY_ 0 0 0 GPR180|p.L369Yfs*24|1|0.34|ENSG00000152749|chr13:94625981-94625981|T/-|frameshift_variant;ENSG00000152749|ENST00000376958|GPR180 GPR180|p.L369Yfs*24|1|0.34|ENSG00000152749|chr13:94625981-94625981|T/-|frameshift_variant GPR180|p.L369Yfs*24|1|0.34|ENSG00000152749|chr13:94625981-94625981|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.02813720703125 3 359.843265 1076.50797 NaN NaN NaN NaN NaN NaN NaN 46.118 1 46.118 45.618 46.618 0 0 0 0 0.21486 1 8683 8683 1.6526 0 1 34589 4939 23267 23282 34024 34024 -0.027227953826468365 PQVDDPLTA 9 Unmodified _PQVDDPLTA_ 0 0 0 REV__MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant REV__MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74163818359375 2 478.24019 954.465826 0.16569 7.9238E-05 -0.32563 -0.00015573 -0.15994 -7.6491E-05 478.2400364135623 60.53 0.70793 57.306 56.889 57.597 -3.2237 32 19 2 0 0 0 0.46796 1 11372 11372 22.736 0 1 3732600 + 34590 17176 23268 23283 34025 34025 -0.013228155817159859 PQVSLSPRDYF 11 Unmodified _PQVSLSPRDYF_ 0 0 0 REV__nc|ENSG00000239998|Q8N149-3|LILRA2 REV__nc|ENSG00000239998|Q8N149-3|LILRA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23583984375 3 436.890944 1307.651 NaN NaN NaN NaN NaN NaN NaN 27.673 1 25.918 25.418 26.418 -1.7552 0 0 0 0.2335 1 4641 4641 5.5233 1.1171 1 + 34591 19777 23269 23284 34026 34026 0.009481672178935696 PQVVEPAAEQL 11 Unmodified _PQVVEPAAEQL_ 0 0 0 REV__ENSG00000182810|ENST00000332395|DDX28 REV__ENSG00000182810|ENST00000332395|DDX28 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2591552734375 2 590.814053 1179.61355 -1.5949 -0.00094228 -0.5415 -0.00031992 -2.1364 -0.0012622 590.8137454087386 14.942 0.30573 13.731 13.583 13.889 -1.2106 26 8 4 0 0 0 0.96183 1 2054 2054 1.0715 1.0715 1 9798300 + 34592 18801 23270 23285 34027 34027 0.03093075952278923 PQVVYKYRY 9 Unmodified _PQVVYKYRY_ 0 0 0 ANO9|p.R626Q|1|0.31|ENSG00000185101|chr11:419639-419639|C/T|missense_variant ANO9|p.R626Q|1|0.31|ENSG00000185101|chr11:419639-419639|C/T|missense_variant ANO9|p.R626Q|1|0.31|ENSG00000185101|chr11:419639-419639|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.2996826171875 3 405.888874 1214.64479 0.18216 7.3935E-05 -0.68604 -0.00027846 -0.50389 -0.00020452 405.888586436578 34.198 0.58273 32.051 31.707 32.29 -2.1468 23 16 2 0 0 0 0.84582 1 6011 6011 8.1555 0 1 553900 34593 167 23271 23286 34028 34028 0.04605693777034503 PQWDEDDCS 9 Unmodified _PQWDEDDCS_ 0 0 0 REV__ENST00000493032.5_1_1:46714192-46726402:+|nuORF REV__ENST00000493032.5_1_1:46714192-46726402:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77783203125 2 547.690204 1093.36585 NaN NaN NaN NaN NaN NaN NaN 18.413 1 16.898 16.398 17.398 -1.5148 0 0 0 0.19631 1 2728 2728 0.20686 0.15706 1 + 34594 14482 23272 23287 34029 34029 -0.17709420977848822 PQWEHRAPG 9 Unmodified _PQWEHRAPG_ 0 0 0 ENST00000522293.5_1_5:179225047-179225996:-|nuORF ENST00000522293.5_1_5:179225047-179225996:-|nuORF ENST00000522293.5_1_5:179225047-179225996:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20172119140625 3 359.845669 1076.51518 -0.20929 -7.5313E-05 -1.4275 -0.00051367 -1.6368 -0.00058898 359.8451271602172 20.945 1.4941 19.56 19.271 20.765 -1.3847 105 42 5 0 0 0 0.77797 1 3366 3366 2.7352 2.7352 1 73469000 34595 10862 23273 23288 34030 34030 -0.020020627822532333 PQWSVGEW 8 Unmodified _PQWSVGEW_ 0 0 0 REV__ENST00000352385.2_1_15:65676444-65676708:-|nuORF REV__ENST00000352385.2_1_15:65676444-65676708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.0085754394531 3 330.15562 987.445031 NaN NaN NaN NaN NaN NaN NaN 124.34 1 124.34 123.84 124.84 0 0 0 0 0.21486 1 24515 24515 5.2969 1.7004 1 + 34596 20771 23274 23289 34031 34031 -0.04919361170709635 PQWWTFES 8 Unmodified _PQWWTFES_ 0 0 0 REV__ENSG00000214929|ENST00000344803|SPATA31D1 REV__ENSG00000214929|ENST00000344803|SPATA31D1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2589111328125 2 540.742899 1079.47125 -1.5262 -0.00082526 -4.4764 -0.0024206 -6.0026 -0.0032459 541.242271925551 15.397 0.38775 14.044 13.709 14.097 -1.3534 13 10 2 0 0 0 1.0273 1 2060 2060 2.3027 0.4585 1 397400 + 34597 19677 23275 23290 34032 34032 -0.06531091999227101 PQYEETFR 8 Unmodified _PQYEETFR_ 0 0 0 nc|ENSG00000167323|Q13586-2|STIM1;nc|ENSG00000167323|Q13586|STIM1;ENSG00000167323|ENST00000526596|STIM1;ENST00000533445.1_1_11:4076769-4103426:+|nuORF nc|ENSG00000167323|Q13586-2|STIM1 nc|ENSG00000167323|Q13586-2|STIM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55615234375 3 357.169818 1068.48762 -0.24574 -8.7771E-05 0.37358 0.00013343 0.12784 4.5661E-05 357.1697786894977 18.848 0.27288 17.537 17.42 17.693 -1.3109 9 7 2 0 0 0 1.0267 1 3087 3087 0 0 1 258970 34598 5801 23276 23291 34033 34033 -0.043880108331450174 PQYEKNFR 8 Unmodified _PQYEKNFR_ 0 0 0 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2739868164062 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 144.73 1 140.06 139.56 140.56 -4.6694 0 0 0 0.21486 1 28668 28668 8.5933 0.68312 1 34599 2539 23277 23292 34034 34034 -0.001803118423140404 PQYEKNFR 8 Unmodified _PQYEKNFR_ 0 0 0 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2742919921875 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 145.96 1 141.27 140.77 141.77 -4.6868 0 0 0 0.21486 1 28940 28940 8.5933 0 1 34600 2539 23277 23292 34035 34035 -0.001803118423140404 PQYEKNFR 8 Unmodified _PQYEKNFR_ 0 0 0 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2718505859375 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 146.01 1 140.9 140.4 141.4 -5.1108 0 0 0 0.21486 1 28230 28230 8.5933 0.43775 1 34601 2539 23277 23292 34036 34036 -0.001803118423140404 PQYNDSSRN 9 Unmodified _PQYNDSSRN_ 0 0 0 ENST00000466003.1_1_1:145609316-145610582:-|nuORF ENST00000466003.1_1_1:145609316-145610582:-|nuORF ENST00000466003.1_1_1:145609316-145610582:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2605590820312 2 540.738877 1079.4632 0.17697 9.5697E-05 1.0155 0.00054913 1.1925 0.00064483 540.7393314653427 14.472 0.55425 14.472 14.146 14.7 0 24 15 2 0 0 0 0.68435 1 2135 2135 7.2892 0 1 825080 34602 10130 23278 23293 34037 34037 -0.07335270986664 PQYNDSSRN 9 Unmodified _PQYNDSSRN_ 0 0 0 ENST00000466003.1_1_1:145609316-145610582:-|nuORF ENST00000466003.1_1_1:145609316-145610582:-|nuORF ENST00000466003.1_1_1:145609316-145610582:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.738877 1079.4632 0.17697 9.5697E-05 1.0155 0.00054913 1.1925 0.00064483 540.7393314653427 14.472 0.55425 14.472 14.146 14.7 0 0.19216 -0.0001355 NaN 7.2892 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 825080 34603 10130 23278 23293 -0.07335270986664 PQYNDSSRN 9 Unmodified _PQYNDSSRN_ 0 0 0 ENST00000466003.1_1_1:145609316-145610582:-|nuORF ENST00000466003.1_1_1:145609316-145610582:-|nuORF ENST00000466003.1_1_1:145609316-145610582:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.738877 1079.4632 -0.35468 -0.00019179 -0.12133 -6.5609E-05 -0.47601 -0.0002574 540.7380515301489 15.539 0.1399 14.323 14.238 14.378 -1.2159 0.043573 -0.001365 NaN 7.2892 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 313730 34604 10130 23278 23293 -0.07335270986664 PQYTSHNY 8 Unmodified _PQYTSHNY_ 0 0 0 REV__NDST4|p.Y459Tfs*52|1|0.38|ENSG00000138653|chr4:114937350-114937350|A/-|frameshift_variant REV__NDST4|p.Y459Tfs*52|1|0.38|ENSG00000138653|chr4:114937350-114937350|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.05682373046875 3 337.150646 1008.43011 NaN NaN NaN NaN NaN NaN NaN 28.381 1 26.626 26.126 27.126 -1.7552 0 0 0 0.21486 1 4788 4788 1.6526 0 1 + 34605 16473 23279 23294 34038 34038 -0.0737685303872695 PRALGRCRQPR 11 Unmodified _PRALGRCRQPR_ 0 0 0 ENST00000373313.2_1_20:39317299-39317872:-|nuORF ENST00000373313.2_1_20:39317299-39317872:-|nuORF ENST00000373313.2_1_20:39317299-39317872:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2251892089844 3 437.250923 1308.73094 NaN NaN NaN NaN NaN NaN NaN 25.225 1 23.691 23.191 24.191 -1.5342 0 0 0 0.22632 1 4136 4136 0.50596 0 1 34606 9195 23280 23295 34039 34039 0.08892375130744767 PRALHPGPP 9 Unmodified _PRALHPGPP_ 0 0 0 ENST00000371754.8_2_20:47894579-47894954:-|nuORF ENST00000371754.8_2_20:47894579-47894954:-|nuORF ENST00000371754.8_2_20:47894579-47894954:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.51824951171875 3 314.515371 940.524284 -0.69641 -0.00021903 0.55233 0.00017372 -0.14407 -4.5313E-05 314.5154878497648 26.168 0.65594 24.245 23.987 24.643 -1.9222 50 18 4 0 0 0 0.44856 1 4277 4277 2.6312 2.0044 1 4425300 34607 9166 23281 23296 34040 34040 0.05164330574075393 PRARLRVHLR 10 Unmodified _PRARLRVHLR_ 0 0 0 ENST00000316836.4_1_14:74180406-74180559:-|nuORF ENST00000316836.4_1_14:74180406-74180559:-|nuORF ENST00000316836.4_1_14:74180406-74180559:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25091552734375 3 425.274057 1272.80034 NaN NaN NaN NaN NaN NaN NaN 152.48 1 147.73 147.23 148.23 -4.7523 0 0 0 2.8426 1 30301 30301 0.043787 0 1 34608 8683 23282 23297 34041 34041 0.1748520214182463 PRARLRVHLR 10 Unmodified _PRARLRVHLR_ 0 0 0 ENST00000316836.4_1_14:74180406-74180559:-|nuORF ENST00000316836.4_1_14:74180406-74180559:-|nuORF ENST00000316836.4_1_14:74180406-74180559:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2518615722656 3 425.274057 1272.80034 NaN NaN NaN NaN NaN NaN NaN 152.54 1 147.36 146.86 147.86 -5.1759 0 0 0 2.8426 1 29565 29565 0.043787 0 1 34609 8683 23282 23297 34042 34042 0.1748520214182463 PRCCCCCCCSD 11 Unmodified _PRCCCCCCCSD_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 598.1510620117188 2 598.151128 1194.2877 NaN NaN NaN NaN NaN NaN NaN 7.905 1 7.905 7.405 8.405 0 0 0 0 0.23698 1 770 770 0 0 1 34610 10970 23283 23298 34043 34043 -0.3016699901825177 PRCLGRFL 8 Unmodified _PRCLGRFL_ 0 0 0 ENST00000421177.6_1_4:4386893-4387597:+|nuORF ENST00000421177.6_1_4:4386893-4387597:+|nuORF ENST00000421177.6_1_4:4386893-4387597:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2394104003906 2 481.273647 960.532741 NaN NaN NaN NaN NaN NaN NaN 150.59 1 150.59 150.09 151.09 0 0 0 0 0.23025 1 30152 30152 1.7423 1.4908 1 34611 9665 23284 23299 34044 34044 0.05089561219051575 PRDSLDKRRSH 11 Unmodified _PRDSLDKRRSH_ 0 0 0 REV__SPX|p.Q57H|1|0.18|ENSG00000134548|chr12:21527752-21527752|G/T|missense_variant REV__SPX|p.Q57H|1|0.18|ENSG00000134548|chr12:21527752-21527752|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 456.259765625 3 456.248124 1365.72254 NaN NaN NaN NaN NaN NaN NaN 101.46 1 97.467 96.967 97.967 -3.9895 0 0 0 0.22632 1 19494 19494 0.026206 0 1 + 34612 24734 23285 23300 34045 34045 0.054310996951244306 PREAQCGF 8 Unmodified _PREAQCGF_ 0 0 0 ENSG00000109674|ENST00000264596|NEIL3 ENSG00000109674|ENST00000264596|NEIL3 ENSG00000109674|ENST00000264596|NEIL3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7481384277344 2 454.20817 906.401786 NaN NaN NaN NaN NaN NaN NaN 47.758 1 47.758 47.258 48.258 0 0 0 0 0.21486 1 9010 9010 9.3474 0.75416 1 34613 2536 23286 23301 34046 34046 -0.055158742196454114 PREGQLPWS 9 Unmodified _PREGQLPWS_ 0 0 0 REV__ENSG00000160703|ENST00000409109|NLRX1;REV__NLRX1|p.G888Vfs*13|1|0.4|ENSG00000160703|chr11:119183169-119183169|G/-|frameshift_variant REV__ENSG00000160703|ENST00000409109|NLRX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.049072265625 3 357.185691 1068.53524 -0.56772 -0.00020278 0.50033 0.00017871 -0.067398 -2.4074E-05 357.18582683859387 61.057 0.66095 61.057 60.802 61.463 0 36 18 3 0 0 0 0.8825 1 11727 11727 1.0715 0 1 1601900 + 34614 17430;24366 23287 23302 34047 34047 0.0037168815770201036 PREGQLPWS 9 Unmodified _PREGQLPWS_ 0 0 0 REV__ENSG00000160703|ENST00000409109|NLRX1;REV__NLRX1|p.G888Vfs*13|1|0.4|ENSG00000160703|chr11:119183169-119183169|G/-|frameshift_variant REV__ENSG00000160703|ENST00000409109|NLRX1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.185691 1068.53524 -0.41062 -0.00014667 0.24555 8.7707E-05 -0.16507 -5.8961E-05 357.1857632455734 64.109 0.62361 60.853 60.468 61.091 -3.2567 -0.08395 0.00010353 NaN 1.0715 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1590800 + 34615 17430;24366 23287 23302 0.0037168815770201036 PREKDEAA 8 Unmodified _PREKDEAA_ 0 0 0 REV__nc|ENSG00000167395|O15015-1|ZNF646 REV__nc|ENSG00000167395|O15015-1|ZNF646 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2299499511719 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 42.708 1 40.102 39.602 40.602 -2.606 0 0 0 0.23312 1 7688 7688 6.2058 5.579 1 + 34616 17924 23288 23303 34048 34048 -0.014885665216752386 PRFHPRWK 8 Unmodified _PRFHPRWK_ 0 0 0 CANT1|p.R40H|1|0.1|ENSG00000171302|chr17:78997504-78997504|C/T|missense_variant CANT1|p.R40H|1|0.1|ENSG00000171302|chr17:78997504-78997504|C/T|missense_variant CANT1|p.R40H|1|0.1|ENSG00000171302|chr17:78997504-78997504|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2117004394531 3 375.213915 1122.61992 NaN NaN NaN NaN NaN NaN NaN 35.881 1 35.881 35.381 36.381 0 0 0 0 0.2325 1 6601 6601 0.62683 0.49901 1 34617 379 23289 23304 34049 34049 0.0635110348496255 PRFYRKVL 8 Unmodified _PRFYRKVL_ 0 0 0 REV__sp|P16760|VP22_HCMVAProteinUL24OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL24PE=3SV=3 REV__sp|P16760|VP22_HCMVAProteinUL24OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL24PE=3SV=3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2221984863281 3 360.222188 1077.64473 NaN NaN NaN NaN NaN NaN NaN 37.983 1 35.514 35.014 36.014 -2.4688 0 0 0 0.23626 1 7027 7027 0.063987 0 1 + 34618 24672 23290 23305 34050 34050 0.109017385676907 PRFYTKVG 8 Unmodified _PRFYTKVG_ 0 0 0 REV__ENST00000368068.7_1_6:131921236-131921287:-|nuORF REV__ENST00000368068.7_1_6:131921236-131921287:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1844177246094 3 323.18351 966.528701 NaN NaN NaN NaN NaN NaN NaN 75.346 1 71.624 71.124 72.124 -3.7227 0 0 0 0.21486 1 14251 14251 1.6526 0.45928 1 + 34619 20933 23291 23306 34051 34051 0.04409794996990968 PRGGAPPGEEE 11 Unmodified _PRGGAPPGEEE_ 0 0 0 ENST00000218104.5_1_X:152990328-152990616:+|nuORF ENST00000218104.5_1_X:152990328-152990616:+|nuORF ENST00000218104.5_1_X:152990328-152990616:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7877807617188 2 548.256902 1094.49925 -0.0015519 -8.5082E-07 1.7418 0.00095493 1.7402 0.00095408 548.2577832800746 52.299 0.38809 49.417 49.204 49.592 -2.8824 14 10 2 0 0 0 0.89764 1 9943 9943 17.113 8.3675 1 1560600 34620 8124 23292 23307 34052 34052 -0.04421813809813102 PRGGAPPGEEE 11 Unmodified _PRGGAPPGEEE_ 0 0 0 ENST00000218104.5_1_X:152990328-152990616:+|nuORF ENST00000218104.5_1_X:152990328-152990616:+|nuORF ENST00000218104.5_1_X:152990328-152990616:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.787841796875 2 548.256902 1094.49925 0.075051 4.1147E-05 2.6229 0.001438 2.698 0.0014792 548.2583543187792 52.475 0.31948 49.387 49.266 49.586 -3.0876 11 8 2 0 0 0 0.92792 1 9655 9655 13.042 5.7532 1 936260 34621 8124 23292 23307 34053 34053 -0.04421813809813102 PRGSFVLGV 9 Unmodified _PRGSFVLGV_ 0 0 0 ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENST00000563000.5_1_15:45879846-45897630:+|nuORF ENST00000568816.5_1_15:45879846-45893495:+|nuORF ENST00000568816.5_1_15:45879846-45893495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.18597412109375 3 311.18351 930.528701 NaN NaN NaN NaN NaN NaN NaN 103.08 1 99.057 98.557 99.557 -4.0212 0 0 0 0.23508 1 19818 19818 1.0715 0.61312 1 34622 11399 23293 23308 34054 34054 0.06065794997005014 PRGVLRPLSR 10 Unmodified _PRGVLRPLSR_ 0 0 0 REV__FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant REV__FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 575.8418579101562 2 575.862006 1149.70946 NaN NaN NaN NaN NaN NaN NaN 162.35 1 157.17 156.67 157.67 -5.1878 0 0 0 0.22588 1 31523 31523 4.5289 0.58447 1 + 34623 23517 23294 23309 34055 34055 0.14059313373672921 PRGVVYKI 8 Unmodified _PRGVVYKI_ 0 0 0 nc|ENSG00000182218|Q96JK4-2|HHIPL1;ENSG00000182218|ENST00000330710|HHIPL1 nc|ENSG00000182218|Q96JK4-2|HHIPL1 nc|ENSG00000182218|Q96JK4-2|HHIPL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2044982910156 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 79.276 1 79.276 78.776 79.776 0 0 0 0 0.21486 1 15426 15426 0.40072 0 1 34624 6774 23295 23310 34056 34056 0.09702671893705883 PRHFYRWLHYF 11 Unmodified _PRHFYRWLHYF_ 0 0 0 REV__ENST00000528063.5_1_11:66049809-66051065:+|nuORF REV__ENST00000528063.5_1_11:66049809-66051065:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2762451171875 3 541.277355 1620.81024 NaN NaN NaN NaN NaN NaN NaN 91.596 1 87.671 87.171 88.171 -3.9251 0 0 0 0.22632 1 17931 17931 0.026206 0 1 + 34625 18435 23296 23311 34057 34057 0.024663453565608506 PRHFYRWLHYF 11 Unmodified _PRHFYRWLHYF_ 0 0 0 REV__ENST00000528063.5_1_11:66049809-66051065:+|nuORF REV__ENST00000528063.5_1_11:66049809-66051065:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.26513671875 3 541.277355 1620.81024 NaN NaN NaN NaN NaN NaN NaN 134.56 1 129.69 129.19 130.19 -4.8726 0 0 0 0.22632 1 25849 25849 0.094841 0 1 + 34626 18435 23296 23311 34058 34058 0.024663453565608506 PRHGNGKY 8 Unmodified _PRHGNGKY_ 0 0 0 REV__nc|ENSG00000151623|P08235-2|NR3C2 REV__nc|ENSG00000151623|P08235-2|NR3C2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1630859375 3 310.163109 927.467498 NaN NaN NaN NaN NaN NaN NaN 148.8 1 144.09 143.59 144.59 -4.7095 0 0 0 0.2396 1 29550 29550 0 0 1 + 34627 17075 23297 23312 34059 34059 0.0008628301757198642 PRIRYRKKREY 11 Unmodified _PRIRYRKKREY_ 0 0 0 SP140|p.K672Rfs*4|1|0.35|ENSG00000079263|chr2:230294310-230294310|A/-|frameshift_variant SP140|p.K672Rfs*4|1|0.35|ENSG00000079263|chr2:230294310-230294310|A/-|frameshift_variant SP140|p.K672Rfs*4|1|0.35|ENSG00000079263|chr2:230294310-230294310|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2708129882812 3 522.310947 1563.91101 NaN NaN NaN NaN NaN NaN NaN 62.573 1 62.573 62.073 63.073 0 0 0 0 0.22632 1 12017 12017 0.026206 0 1 34628 25769 23298 23313 34060 34060 0.15161377339381943 PRKDKHSSK 9 Unmodified _PRKDKHSSK_ 0 0 0 REV__TCEB3|p.N465Kfs*2|1|0.27|ENSG00000011007|chr1:23751913-23751914|-/A|frameshift_variant REV__TCEB3|p.N465Kfs*2|1|0.27|ENSG00000011007|chr1:23751913-23751914|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2734985351562 2 541.806897 1081.59924 -1.2789 -0.00069292 0.9233 0.00050025 -0.3556 -0.00019267 541.8075218395879 17.098 0.14204 15.584 15.483 15.625 -1.5148 5 3 2 0 0 0 0.82765 1 2464 2464 13.906 1.6654 1 182310 + 34629 13926 23299 23314 34061 34061 0.06170468314644495 PRKDKHSSK 9 Unmodified _PRKDKHSSK_ 0 0 0 REV__TCEB3|p.N465Kfs*2|1|0.27|ENSG00000011007|chr1:23751913-23751914|-/A|frameshift_variant REV__TCEB3|p.N465Kfs*2|1|0.27|ENSG00000011007|chr1:23751913-23751914|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 541.806897 1081.59924 -0.42772 -0.00023174 -0.41259 -0.00022354 -0.8403 -0.00045528 541.806907208315 16.95 0.10608 15.678 15.625 15.731 -1.2722 0.047043 -0.00076961 NaN 13.906 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 254690 + 34630 13926 23299 23314 0.06170468314644495 PRKIEEIKDF 10 Unmodified _PRKIEEIKDF_ 0 0 0 RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF;ENST00000422418.1_1_2:78019946-78019994:+|nuORF RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.253173828125 3 425.574955 1273.70304 -0.20053 -8.5342E-05 0.46813 0.00019922 0.2676 0.00011388 425.9095374921043 59.315 0.44986 56.405 56.11 56.56 -2.9105 19 12 2 0 0 0 0.54596 1 11375 11375 36.395 24.167 1 1753600 34631 6242 23300 23315 34062 34062 0.07713330631668214 PRKIEEIKDF 10 Unmodified _PRKIEEIKDF_ 0 0 0 RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF;ENST00000422418.1_1_2:78019946-78019994:+|nuORF RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 425.574955 1273.70304 -0.073274 -3.1184E-05 0.24652 0.00010491 0.17325 7.3731E-05 425.5750356664348 56.444 0.52364 56.444 56.151 56.675 0 0.053964 -2.403E-05 NaN 36.395 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2162600 34632 6242 23300 23315 0.07713330631668214 PRKIEEIKDF 10 Unmodified _PRKIEEIKDF_ 0 0 0 RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF;ENST00000422418.1_1_2:78019946-78019994:+|nuORF RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 425.574955 1273.70304 0.053794 2.2893E-05 0.063808 2.7155E-05 0.1176 5.0048E-05 425.5749994887168 59.688 0.52168 56.374 56.031 56.552 -3.3139 -0.016509 -0.00025731 NaN 36.395 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1306400 34633 6242 23300 23315 0.07713330631668214 PRKIEEIKDF 10 Unmodified _PRKIEEIKDF_ 0 0 0 RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF;ENST00000422418.1_1_2:78019946-78019994:+|nuORF RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 425.574955 1273.70304 -0.14644 -6.232E-05 0.29866 0.0001271 0.15222 6.4782E-05 425.57510782134915 59.562 0.45023 56.338 56.047 56.498 -3.2237 -0.051863 4.2534E-05 NaN 36.395 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2336700 34634 6242 23300 23315 0.07713330631668214 PRKKLLLVV 9 Unmodified _PRKKLLLVV_ 0 0 0 REV__nc|ENSG00000288520|G9CGD6-3|CNK3;REV__ENST00000433165.6_1_6:154727490-154754936:-|nuORF REV__nc|ENSG00000288520|G9CGD6-3|CNK3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2825317382812 2 533.378969 1064.74339 NaN NaN NaN NaN NaN NaN NaN 76.092 1 72.677 72.177 73.177 -3.4151 0 0 0 0.23508 1 14849 14849 0 0 1 + 34635 24321;21641 23301 23316 34063 34063 0.21360341812760453 PRKKLLLVV 9 Unmodified _PRKKLLLVV_ 0 0 0 REV__nc|ENSG00000288520|G9CGD6-3|CNK3;REV__ENST00000433165.6_1_6:154727490-154754936:-|nuORF REV__nc|ENSG00000288520|G9CGD6-3|CNK3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2749633789062 2 533.378969 1064.74339 NaN NaN NaN NaN NaN NaN NaN 150 1 145.27 144.77 145.77 -4.7323 0 0 0 0.19635 1 29789 29789 0 0 1 + 34636 24321;21641 23301 23316 34064 34064 0.21360341812760453 PRKRRHCL 8 Unmodified _PRKRRHCL_ 0 0 0 ENST00000424203.5_1_21:34911493-34911649:-|nuORF;ENST00000426819.5_1_21:34911496-34915075:-|nuORF ENST00000424203.5_1_21:34911493-34911649:-|nuORF ENST00000424203.5_1_21:34911493-34911649:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.274169921875 2 533.314169 1064.61378 NaN NaN NaN NaN NaN NaN NaN 157.7 1 152.91 152.41 153.41 -4.7885 0 0 0 0.2396 1 31363 31363 0.12286 0 1 34637 9699 23302 23317 34065 34065 0.08406261981804164 PRKRTVLFY 9 Unmodified _PRKRTVLFY_ 0 0 0 REV__ENST00000433094.1_1_20:46994536-46995317:+|nuORF REV__ENST00000433094.1_1_20:46994536-46995317:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2532958984375 2 590.353483 1178.69241 0.094277 5.5657E-05 4.371 0.0025804 4.4653 0.0026361 590.3536733237447 94.138 0.10159 94.138 94.073 94.175 0 4 2 2 0 0 0 0.74257 1 18425 18425 4.3292 0.73274 1 558590 + 34638 21638 23303 23318 34066 34066 0.11021392767884208 PRLIERYLRRA 11 Unmodified _PRLIERYLRRA_ 0 0 0 REV__MTA1|p.C486Y|1|0.41|ENSG00000182979|chr14:105464786-105464786|G/A|missense_variant REV__MTA1|p.C486Y|1|0.41|ENSG00000182979|chr14:105464786-105464786|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7830810546875 3 481.628276 1441.863 NaN NaN NaN NaN NaN NaN NaN 123.02 1 118.43 117.93 118.93 -4.5926 0 0 0 0.22632 1 23682 23682 0.172 0 1 + 34639 23884 23304 23319 34067 34067 0.1597430341935251 PRLKNYFK 8 Unmodified _PRLKNYFK_ 0 0 0 ENSG00000161040|ENST00000440067|FBXL13;ENST00000379305.7_2_7:102696092-102715217:-|nuORF;ENST00000471074.1_1_7:102687466-102715217:-|nuORF ENSG00000161040|ENST00000440067|FBXL13 ENSG00000161040|ENST00000440067|FBXL13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2765502929688 2 533.313826 1064.6131 NaN NaN NaN NaN NaN NaN NaN 158.45 1 153.65 153.15 154.15 -4.7952 0 0 0 0.23899 1 31507 31507 1.3295 0.36726 1 34640 5283 23305 23320 34068 34068 0.08337745813742004 PRLKYGRH 8 Unmodified _PRLKYGRH_ 0 0 0 REV__nc|ENSG00000204815|Q96NG3-2|ODAD4 REV__nc|ENSG00000204815|Q96NG3-2|ODAD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.9970703125 3 342.870037 1025.58828 -0.8462 -0.00029014 -0.51752 -0.00017744 -1.3637 -0.00046758 342.86990970004905 15.438 0.20465 14.324 14.202 14.407 -1.1142 8 5 2 0 0 0 1.0265 1 2395 2395 0.40072 0 1 506100 + 34641 19566 23306 23321 34069 34069 0.07651110731012523 PRLLITHEP 9 Unmodified _PRLLITHEP_ 0 0 0 REV__ENST00000435688.1_1_22:42539301-42540546:-|nuORF REV__ENST00000435688.1_1_22:42539301-42540546:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.55224609375 3 359.213469 1074.61858 -0.46859 -0.00016832 -0.056387 -2.0255E-05 -0.52498 -0.00018858 359.21345435470346 37.661 0.89583 35.324 34.981 35.877 -2.3375 82 25 5 0 0 0 0.5428 1 6649 6649 0.073264 0 1 46799000 + 34642 21660 23307 23322 34070 34070 0.0842542460554796 PRLLKLVER 9 Unmodified _PRLLKLVER_ 0 0 0 nc|ENSG00000286175|A0A494C0N9|FAM246B;nc|ENSG00000286102|A0A494C0Y3|FAM246A;nc|ENSG00000286025|P0DSO1|FAM246C nc|ENSG00000286175|A0A494C0N9|FAM246B nc|ENSG00000286175|A0A494C0N9|FAM246B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2223815917969 3 375.248514 1122.72371 NaN NaN NaN NaN NaN NaN NaN 78.841 1 78.841 78.341 79.341 0 0 0 0 0.23508 1 15345 15345 3.8763 1.5936 1 34643 12651 23308 23323 34071 34071 0.16725965801970233 PRLLRWRRTEW 11 Unmodified _PRLLRWRRTEW_ 0 0 0 REV__ENST00000389279.7_1_8:22462563-22463297:+|nuORF REV__ENST00000389279.7_1_8:22462563-22463297:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.68505859375 3 523.635542 1567.8848 NaN NaN NaN NaN NaN NaN NaN 164.11 1 159.07 158.57 159.57 -5.0446 0 0 0 0.22632 1 31979 31979 0.50596 0 1 + 34644 21193 23309 23324 34072 34072 0.12357108167907427 PRLLRWRRTEW 11 Unmodified _PRLLRWRRTEW_ 0 0 0 REV__ENST00000389279.7_1_8:22462563-22463297:+|nuORF REV__ENST00000389279.7_1_8:22462563-22463297:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.68505859375 3 523.635542 1567.8848 NaN NaN NaN NaN NaN NaN NaN 164.12 1 159.08 158.58 159.58 -5.0446 0 0 0 0.23698 1 31982 31982 0.45452 0 1 + 34645 21193 23309 23324 34073 34073 0.12357108167907427 PRLQLEPEP 9 Unmodified _PRLQLEPEP_ 0 0 0 REV__ENSG00000115267|ENST00000649979|IFIH1 REV__ENSG00000115267|ENST00000649979|IFIH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2020568847656 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 127.85 1 123.15 122.65 123.65 -4.6998 0 0 0 0.23508 1 24596 24596 7.609 2.7119 1 + 34646 15417 23310 23325 34074 34074 0.046171279889904326 PRLRVRLGQ 9 Unmodified _PRLRVRLGQ_ 0 0 0 REV__ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant;REV__nc|ENSG00000132470|P16144-5|ITGB4 REV__ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7835693359375 2 547.848899 1093.68324 NaN NaN NaN NaN NaN NaN NaN 174.11 1 174.11 173.61 174.61 0 0 0 0 0.19622 1 36034 36034 0.96228 0 1 + 34647 16118;24040 23311 23326 34075 34075 0.14015044202210447 PRLWRRRPGRP 11 Unmodified _PRLWRRRPGRP_ 0 0 0 REV__CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant REV__CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.0249328613281 4 362.472089 1445.85925 -0.89181 -0.00032325 0.034131 1.2372E-05 -0.85767 -0.00031088 362.72280053071455 15.081 0.42211 13.967 13.78 14.202 -1.1142 30 11 4 0 0 0 0.80759 1 2296 2296 2.6312 0 1 7186300 + 34648 13248 23312 23327 34076 34076 0.15415678436147573 PRLWRRRPGRP 11 Unmodified _PRLWRRRPGRP_ 0 0 0 REV__CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant REV__CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 362.472089 1445.85925 -0.34833 -0.00012626 -0.64326 -0.00023316 -0.99159 -0.00035942 362.4719038015466 14.055 0.38126 14.055 13.863 14.244 0 0.065704 -0.00054911 NaN 2.6312 28 10 4 NaN NaN NaN NaN 0 NaN NaN 0 5161400 + 34649 13248 23312 23327 0.15415678436147573 PRLWRRRPGRP 11 Unmodified _PRLWRRRPGRP_ 0 0 0 REV__CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant REV__CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 362.472089 1445.85925 -0.89181 -0.00032325 0.034131 1.2372E-05 -0.85767 -0.00031088 362.72280053071455 15.081 0.42211 13.967 13.78 14.202 -1.1142 -0.022406 0.00043303 NaN 2.6312 30 11 4 NaN NaN NaN NaN 0 NaN NaN 0 7186300 + 34650 13248 23312 23327 0.15415678436147573 PRLWRRRPGRP 11 Unmodified _PRLWRRRPGRP_ 0 0 0 REV__CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant REV__CAMSAP3|p.P438Rfs*125|1|0.39|ENSG00000076826|chr19:7611801-7611801|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 362.472089 1445.85925 -0.58909 -0.00021353 -0.16821 -6.0973E-05 -0.75731 -0.0002745 362.4720358610589 15.168 0.34844 13.946 13.752 14.101 -1.2219 -0.043298 0.00013965 NaN 2.6312 28 9 4 NaN NaN NaN NaN 0 NaN NaN 0 5177700 + 34651 13248 23312 23327 0.15415678436147573 PRMRRQWRHNQ 11 Unmodified _PRMRRQWRHNQ_ 0 0 0 REV__ENST00000287844.6_1_7:150922068-150924280:-|nuORF REV__ENST00000287844.6_1_7:150922068-150924280:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.268798828125 3 522.276131 1563.80656 NaN NaN NaN NaN NaN NaN NaN 159.7 1 159.7 159.2 160.2 0 0 0 0 0.22632 1 32065 32065 0.094841 0 1 + 34652 20343 23313 23328 34077 34077 0.04721352311071314 PRMRRQWRHNQ 11 Unmodified _PRMRRQWRHNQ_ 0 0 0 REV__ENST00000287844.6_1_7:150922068-150924280:-|nuORF REV__ENST00000287844.6_1_7:150922068-150924280:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2755737304688 3 522.276131 1563.80656 NaN NaN NaN NaN NaN NaN NaN 159.71 1 159.71 159.21 160.21 0 0 0 0 0.22632 1 32068 32068 0.094841 0 1 + 34653 20343 23313 23328 34078 34078 0.04721352311071314 PRMRWRRRVTR 11 Unmodified _PRMRWRRRVTR_ 0 0 0 ENST00000592505.1_1_19:11038470-11038518:-|nuORF;ENST00000253031.6_1_19:11034814-11038527:-|nuORF ENST00000592505.1_1_19:11038470-11038518:-|nuORF ENST00000592505.1_1_19:11038470-11038518:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6900634765625 3 523.975905 1568.90588 -0.26105 -0.00013678 -1.5765 -0.00082606 -1.8376 -0.00096284 523.9752311251528 72.286 0.47002 68.659 68.552 69.022 -3.6275 16 12 2 0 0 0 0.89122 1 13672 13672 0.50596 0.47455 1 4623800 34654 8231 23314 23329 34079 34079 0.14418794995776807 PRNELTST 8 Unmodified _PRNELTST_ 0 0 0 REV__ENST00000377735.7_1_19:46286459-46286786:-|nuORF REV__ENST00000377735.7_1_19:46286459-46286786:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2405090332031 2 459.237981 916.461409 0.19285 8.8562E-05 0.45367 0.00020834 0.64652 0.0002969 459.238077733174 27.973 1.7164 26.218 25.264 26.981 -1.7552 149 48 5 0 0 0 0.70613 1 4810 4810 13.508 13.508 1 21412000 + 34655 21106 23315 23330 34080 34080 -0.00016280004626878508 PRNPTLTM 8 Unmodified _PRNPTLTM_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24713134765625 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 176.48 1 171.69 171.19 172.19 -4.7898 0 0 0 0.21486 1 36087 36087 0.69038 0 1 34656 3691 23316 23331 34081 34081 0.012935583655917071 PRNPTLTM 8 Unmodified _PRNPTLTM_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2466735839844 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 176.8 1 171.93 171.43 172.43 -4.8739 0 0 0 0.21486 1 35177 35177 0.69038 0 1 34657 3691 23316 23331 34082 34082 0.012935583655917071 PRNPTLTM 8 Unmodified _PRNPTLTM_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2466125488281 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 176.96 1 172.06 171.56 172.56 -4.9008 0 0 0 0.21486 1 35288 35288 0.69038 0 1 34658 3691 23316 23331 34083 34083 0.012935583655917071 PRNTRSMFLRK 11 Unmodified _PRNTRSMFLRK_ 0 0 0 REV__ENST00000478088.1_1_16:76269257-76269449:-|nuORF REV__ENST00000478088.1_1_16:76269257-76269449:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 469.2751159667969 3 469.26635 1404.77722 NaN NaN NaN NaN NaN NaN NaN 124.94 1 124.94 124.44 125.44 0 0 0 0 0.22632 1 24641 24641 0.026206 0 1 + 34659 14158 23317 23332 34084 34084 0.09102395242189232 PRPGAKPTS 9 Unmodified _PRPGAKPTS_ 0 0 0 ENST00000483208.5_2_15:42694887-42695976:+|nuORF ENST00000483208.5_2_15:42694887-42695976:+|nuORF ENST00000483208.5_2_15:42694887-42695976:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.0425109863281 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 58.763 1 58.763 58.263 59.263 0 0 0 0 0.23508 1 11251 11251 1.0715 0 1 34660 10411 23318 23333 34085 34085 0.044843204745689036 PRPGAKPTS 9 Unmodified _PRPGAKPTS_ 0 0 0 ENST00000483208.5_2_15:42694887-42695976:+|nuORF ENST00000483208.5_2_15:42694887-42695976:+|nuORF ENST00000483208.5_2_15:42694887-42695976:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.1750793457031 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 85.284 1 81.62 81.12 82.12 -3.6641 0 0 0 0.23508 1 16673 16673 2.7352 0 1 34661 10411 23318 23333 34086 34086 0.044843204745689036 PRPLCLLAY 9 Unmodified _PRPLCLLAY_ 0 0 0 ENST00000337959.8_1_22:43267082-43267280:-|nuORF ENST00000337959.8_1_22:43267082-43267280:-|nuORF ENST00000337959.8_1_22:43267082-43267280:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6917724609375 2 523.296788 1044.57902 0.48173 0.00025209 1.1431 0.0005982 1.6249 0.00085029 523.2974012915364 104.89 0.69212 104.89 104.55 105.24 0 25 19 2 0 0 0 0.80521 1 20647 20647 10.824 0 1 1721100 34662 8823 23319 23334 34087 34087 0.05851581330489353 PRPMMPSL 8 Unmodified _PRPMMPSL_ 0 0 0 ENST00000374601.7_1_1:23730426-23730582:-|nuORF ENST00000374601.7_1_1:23730426-23730582:-|nuORF ENST00000374601.7_1_1:23730426-23730582:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.162953 927.467029 NaN NaN NaN NaN NaN NaN NaN 105.86 1 105.86 105.36 106.36 0 0 0 0 0.21486 1 20805 20805 3.5965 0.31518 1 34663 9222 23320 23335 34088 34088 0.00039403981850227865 PRPREARRPAP 11 Unmodified _PRPREARRPAP_ 0 0 0 ENST00000608517.1_1_1:178694567-178695308:-|nuORF ENST00000608517.1_1_1:178694567-178695308:-|nuORF ENST00000608517.1_1_1:178694567-178695308:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.8941345214844 3 434.921571 1301.74288 -0.44621 -0.00019406 0.48114 0.00020926 0.034934 1.5194E-05 434.92168382252186 16.939 0.20957 15.723 15.601 15.811 -1.2159 14 5 3 0 0 0 0.96225 1 2675 2675 0.45452 0 1 817200 34664 11766 23321 23336 34089 34089 0.10408315145605229 PRPREARRPAP 11 Unmodified _PRPREARRPAP_ 0 0 0 ENST00000608517.1_1_1:178694567-178695308:-|nuORF ENST00000608517.1_1_1:178694567-178695308:-|nuORF ENST00000608517.1_1_1:178694567-178695308:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 434.921571 1301.74288 0.056341 2.4504E-05 0.30632 0.00013322 0.36266 0.00015773 434.9214616302725 15.575 0.23546 15.575 15.473 15.708 0 -0.065422 -0.00016214 NaN 0.45452 14 6 3 NaN NaN NaN NaN 0 NaN NaN 0 702120 34665 11766 23321 23336 0.10408315145605229 PRPREARRPAP 11 Unmodified _PRPREARRPAP_ 0 0 0 ENST00000608517.1_1_1:178694567-178695308:-|nuORF ENST00000608517.1_1_1:178694567-178695308:-|nuORF ENST00000608517.1_1_1:178694567-178695308:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 434.921571 1301.74288 -0.51344 -0.00022331 0.43796 0.00019048 -0.075482 -3.2829E-05 434.9217302945303 16.895 0.24828 15.623 15.552 15.8 -1.2722 -0.01739 9.6213E-06 NaN 0.45452 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 302230 34666 11766 23321 23336 0.10408315145605229 PRPRKSVI 8 Unmodified _PRPRKSVI_ 0 0 0 L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|38|1|anti-sense L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|38|1|anti-sense L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|38|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.2059631347656 3 318.206538 951.597784 NaN NaN NaN NaN NaN NaN NaN 76.707 1 76.707 76.207 77.207 0 0 0 0 0.21486 1 14907 14907 1.6526 0 1 34667 12025 23322 23337 34090 34090 0.12004879016558334 PRPRKSVI 8 Unmodified _PRPRKSVI_ 0 0 0 L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|38|1|anti-sense L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|38|1|anti-sense L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|38|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.20648193359375 3 318.206538 951.597784 NaN NaN NaN NaN NaN NaN NaN 110.2 1 105.83 105.33 106.33 -4.3776 0 0 0 0.21486 1 21722 21722 1.6526 0.17072 1 34668 12025 23322 23337 34091 34091 0.12004879016558334 PRPRKSVI 8 Unmodified _PRPRKSVI_ 0 0 0 L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|38|1|anti-sense L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|38|1|anti-sense L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|38|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.2060546875 3 318.206538 951.597784 NaN NaN NaN NaN NaN NaN NaN 127.03 1 122.23 121.73 122.73 -4.7958 0 0 0 0.21486 1 24383 24383 1.6526 0.17072 1 34669 12025 23322 23337 34092 34092 0.12004879016558334 PRPRKSVI 8 Unmodified _PRPRKSVI_ 0 0 0 L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|38|1|anti-sense L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|38|1|anti-sense L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|38|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.2061462402344 3 318.206538 951.597784 NaN NaN NaN NaN NaN NaN NaN 107.92 1 103.78 103.28 104.28 -4.135 0 0 0 0.21486 1 20760 20760 1.6526 0.17072 1 34670 12025 23322 23337 34093 34093 0.12004879016558334 PRPTHEAP 8 Unmodified _PRPTHEAP_ 0 0 0 ENST00000295549.8_1_2:177502248-177502497:-|nuORF ENST00000295549.8_1_2:177502248-177502497:-|nuORF ENST00000295549.8_1_2:177502248-177502497:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.2483215332031 2 452.735409 903.456264 0.12922 5.8504E-05 -1.3454 -0.00060911 -1.2162 -0.0005506 452.73460864923794 89.875 0.62952 86.097 85.873 86.502 -3.7779 22 17 2 0 0 0 0.89147 1 17271 17271 0.62683 0 1 1204100 34671 8494 23323 23338 34094 34094 0.0006746092341245458 PRPTHEAP 8 Unmodified _PRPTHEAP_ 0 0 0 ENST00000295549.8_1_2:177502248-177502497:-|nuORF ENST00000295549.8_1_2:177502248-177502497:-|nuORF ENST00000295549.8_1_2:177502248-177502497:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 452.735409 903.456264 -0.18099 -8.1941E-05 -1.4331 -0.00064879 -1.614 -0.00073073 452.73472113182726 89.83 0.50034 85.97 85.761 86.262 -3.8595 -0.063303 -3.4086E-05 NaN 0.62683 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1208600 34672 8494 23323 23338 0.0006746092341245458 PRQGAPTAL 9 Unmodified _PRQGAPTAL_ 0 0 0 ENSG00000109851|ENST00000524983|DBX1 ENSG00000109851|ENST00000524983|DBX1 ENSG00000109851|ENST00000524983|DBX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.02197265625 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 56.506 1 53.612 53.112 54.112 -2.8944 0 0 0 0.23508 1 10828 10828 5.2969 0 1 34673 2546 23324 23339 34095 34095 0.04484320474546166 PRRKRRRRMKK 11 Unmodified _PRRKRRRRMKK_ 0 0 0 REV__ENST00000300811.7_1_19:44112133-44118443:-|nuORF REV__ENST00000300811.7_1_19:44112133-44118443:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.676025390625 3 523.339066 1566.99537 0.19251 0.00010075 2.8591 0.0014963 3.0516 0.001597 523.6757110844484 145.94 0.17474 145.94 145.8 145.98 0 6 4 2 0 0 0 0.82733 1 29173 29173 0 0 1 1698000 + 34674 20403 23325 23340 34096 34096 0.2345504967515808 PRRLLVRRRL 10 Unmodified _PRRLLVRRRL_ 0 0 0 REV__ENST00000528318.5_1_8:42716773-42751856:-|nuORF REV__ENST00000528318.5_1_8:42716773-42751856:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.4776916503906 4 334.479649 1333.88949 -0.50847 -0.00017007 -1.5111 -0.00050542 -2.0195 -0.0006755 334.47896132802185 71.762 1.2991 71.762 71.416 72.715 0 77 36 4 0 0 0 0.53414 1 13987 13987 0.13989 0.13989 1 10325000 + 34675 22722 23326 23341 34097 34097 0.2359003710134857 PRRLRWWRSTR 11 Unmodified _PRRLRWWRSTR_ 0 0 0 ENST00000379561.5_1_13:41240138-41240633:-|nuORF ENST00000379561.5_1_13:41240138-41240633:-|nuORF ENST00000379561.5_1_13:41240138-41240633:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3966064453125 2 785.452917 1568.89128 NaN NaN NaN NaN NaN NaN NaN 168 1 168 167.5 168.5 0 0 0 0 0.23698 1 34366 34366 2.2828 1.9321 1 34676 9297 23327 23342 34098 34098 0.12959046119294726 PRRRGRQRY 9 Unmodified _PRRRGRQRY_ 0 0 0 ENSG00000162728|ENST00000368088|KCNJ9 ENSG00000162728|ENST00000368088|KCNJ9 ENSG00000162728|ENST00000368088|KCNJ9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7772216796875 2 622.863403 1243.71225 NaN NaN NaN NaN NaN NaN NaN 71.183 1 67.933 67.433 68.433 -3.2492 0 0 0 0.23508 1 13857 13857 4.3292 0.38484 1 34677 5359 23328 23343 34099 34099 0.10014581551217816 PRRRGRQRY 9 Unmodified _PRRRGRQRY_ 0 0 0 ENSG00000162728|ENST00000368088|KCNJ9 ENSG00000162728|ENST00000368088|KCNJ9 ENSG00000162728|ENST00000368088|KCNJ9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7720336914062 2 622.863403 1243.71225 NaN NaN NaN NaN NaN NaN NaN 74.474 1 71.11 70.61 71.61 -3.3643 0 0 0 0.19632 1 14530 14530 0.073264 0.069883 1 34678 5359 23328 23343 34100 34100 0.10014581551217816 PRRRGRQRY 9 Unmodified _PRRRGRQRY_ 0 0 0 ENSG00000162728|ENST00000368088|KCNJ9 ENSG00000162728|ENST00000368088|KCNJ9 ENSG00000162728|ENST00000368088|KCNJ9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.76025390625 2 622.863403 1243.71225 NaN NaN NaN NaN NaN NaN NaN 57.673 1 54.422 53.922 54.922 -3.2517 0 0 0 0.19626 1 10710 10710 0.0033805 0.0033805 1 34679 5359 23328 23343 34101 34101 0.10014581551217816 PRRRGRQRY 9 Unmodified _PRRRGRQRY_ 0 0 0 ENSG00000162728|ENST00000368088|KCNJ9 ENSG00000162728|ENST00000368088|KCNJ9 ENSG00000162728|ENST00000368088|KCNJ9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76611328125 2 622.863403 1243.71225 NaN NaN NaN NaN NaN NaN NaN 68.371 1 64.98 64.48 65.48 -3.3903 0 0 0 0.23508 1 12904 12904 7.2892 1.0834 1 34680 5359 23328 23343 34102 34102 0.10014581551217816 PRRRRRWRPNF 11 Unmodified _PRRRRRWRPNF_ 0 0 0 REV__ENST00000535818.1_1_11:60906157-60928919:-|nuORF REV__ENST00000535818.1_1_11:60906157-60928919:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2736206054688 3 532.978414 1595.91341 NaN NaN NaN NaN NaN NaN NaN 57.626 1 57.626 57.126 58.126 0 0 0 0 0.23698 1 11020 11020 0.40827 0.32491 1 + 34681 22813 23329 23344 34103 34103 0.1392927058773239 PRRRRRWRPNF 11 Unmodified _PRRRRRWRPNF_ 0 0 0 REV__ENST00000535818.1_1_11:60906157-60928919:-|nuORF REV__ENST00000535818.1_1_11:60906157-60928919:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2735595703125 3 532.978414 1595.91341 NaN NaN NaN NaN NaN NaN NaN 154.22 1 154.22 153.72 154.72 0 0 0 0 0.22632 1 30908 30908 0.172 0.14579 1 + 34682 22813 23329 23344 34104 34104 0.1392927058773239 PRRRRRWRPNF 11 Unmodified _PRRRRRWRPNF_ 0 0 0 REV__ENST00000535818.1_1_11:60906157-60928919:-|nuORF REV__ENST00000535818.1_1_11:60906157-60928919:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27294921875 3 532.978414 1595.91341 0.098231 5.2355E-05 -2.1978 -0.0011714 -2.0996 -0.001119 533.3121474005167 138.51 0.17621 133.87 133.74 133.92 -4.6413 6 4 2 0 0 0 0.89135 1 27356 27356 0.026206 0.025642 1 1558400 + 34683 22813 23329 23344 34105 34105 0.1392927058773239 PRRRWWWLQRR 11 Unmodified _PRRRWWWLQRR_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 565.590576171875 3 565.990431 1694.94946 NaN NaN NaN NaN NaN NaN NaN 169.04 1 164.25 163.75 164.75 -4.7898 0 0 0 0.22632 1 34210 34210 0.58532 0.58532 1 34684 11615 23330 23345 34106 34106 0.12978727764561881 PRRSRQSCP 9 Unmodified _PRRSRQSCP_ 0 0 0 REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.778564453125 2 543.782899 1085.55124 NaN NaN NaN NaN NaN NaN NaN 150.12 1 144.92 144.42 145.42 -5.1994 0 0 0 0.19669 1 29085 29085 0.37959 0 1 + 34685 21850 23331 23346 34107 34107 0.011890711229852968 PRRWLKRRLKR 11 Unmodified _PRRWLKRRLKR_ 0 0 0 ENST00000251102.12_1_16:57965650-57974178:-|nuORF ENST00000251102.12_1_16:57965650-57974178:-|nuORF ENST00000251102.12_1_16:57965650-57974178:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2640991210938 3 522.342693 1564.00625 0.2002 0.00010458 -2.8346 -0.0014806 -2.6344 -0.001376 522.342410951293 132.61 0.17386 132.61 132.55 132.72 0 7 4 2 0 0 0 0.96227 1 26208 26208 0.094841 0.094841 1 1346900 34686 8220 23332 23347 34108 34108 0.24680775321075998 PRRWTRWCRRR 11 Unmodified _PRRWTRWCRRR_ 0 0 0 ENST00000521604.6_1_8:54923030-54934756:-|nuORF ENST00000521604.6_1_8:54923030-54934756:-|nuORF ENST00000521604.6_1_8:54923030-54934756:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7926025390625 3 543.635771 1627.88548 NaN NaN NaN NaN NaN NaN NaN 157.97 1 157.97 157.47 158.47 0 0 0 0 0.23698 1 31713 31713 0.08335 0 1 34687 10852 23333 23348 34109 34109 0.09665624335957546 PRSAEMWPL 9 Unmodified _PRSAEMWPL_ 0 0 0 REV__nc|ENSG00000100065|Q9BWT7-2|CARD10 REV__nc|ENSG00000100065|Q9BWT7-2|CARD10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7792358398438 2 543.773677 1085.5328 0.32211 0.00017516 2.2886 0.0012445 2.6107 0.0014196 544.2748481676981 102.47 1.2366 98.149 97.573 98.809 -4.3208 68 35 3 0 0 0 0.44262 1 19703 19703 23.148 1.6114 1 4719700 + 34688 23967 23334 23349 34110 34110 -0.006544835716113084 PRSAEMWPL 9 Unmodified _PRSAEMWPL_ 0 0 0 REV__nc|ENSG00000100065|Q9BWT7-2|CARD10 REV__nc|ENSG00000100065|Q9BWT7-2|CARD10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.779296875 2 543.773677 1085.5328 0.5808 0.00031582 2.6898 0.0014627 3.2706 0.0017785 544.2751144150842 102.11 1.2848 98.088 97.598 98.882 -4.0212 73 36 3 0 0 0 0.44262 1 19732 19732 23.148 0.41214 1 4736900 + 34689 23967 23334 23349 34111 34111 -0.006544835716113084 PRSHRYMF 8 Unmodified _PRSHRYMF_ 0 0 0 REV__ENSG00000214360|ENST00000398186|EFCAB9 REV__ENSG00000214360|ENST00000398186|EFCAB9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.0437622070312 2 547.271635 1092.52872 NaN NaN NaN NaN NaN NaN NaN 7.512 1 6.4972 5.9972 6.9972 -1.0148 0 0 0 0.21486 1 614 614 0.79363 0 1 + 34690 19667 23335 23350 34112 34112 -0.01384528274661534 PRSPNVLGLQA 11 Unmodified _PRSPNVLGLQA_ 0 0 0 ENST00000321287.12_1_19:52839700-52851056:+|nuORF;ENST00000594919.1_1_19:52839677-52851056:+|nuORF ENST00000321287.12_1_19:52839700-52851056:+|nuORF ENST00000321287.12_1_19:52839700-52851056:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3326416015625 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 133.09 1 133.09 132.59 133.59 0 0 0 0 0.22632 1 26324 26324 0.172 0 1 34691 8718 23336 23351 34113 34113 0.0765590814596635 PRTRWRPFGRQ 11 Unmodified _PRTRWRPFGRQ_ 0 0 0 ENST00000353258.7_1_16:19528441-19533090:-|nuORF ENST00000353258.7_1_16:19528441-19533090:-|nuORF ENST00000353258.7_1_16:19528441-19533090:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 486.76031494140625 3 486.272604 1455.79598 NaN NaN NaN NaN NaN NaN NaN 121.9 1 121.9 121.4 122.4 0 0 0 0 0.22632 1 24032 24032 1.4551 0 1 34692 8934 23337 23352 34114 34114 0.08631692928224766 PRVLLKKLQ 9 Unmodified _PRVLLKKLQ_ 0 0 0 SLC34A2|p.P584L|1|0.32|ENSG00000157765|chr4:25676427-25676427|C/T|missense_variant SLC34A2|p.P584L|1|0.32|ENSG00000157765|chr4:25676427-25676427|C/T|missense_variant SLC34A2|p.P584L|1|0.32|ENSG00000157765|chr4:25676427-25676427|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.77685546875 2 547.874051 1093.73355 NaN NaN NaN NaN NaN NaN NaN 110.5 1 110.5 110 111 0 0 0 0 0.19626 1 21733 21733 0.0033805 0 1 34693 25679 23338 23353 34115 34115 0.19043153807365343 PRVRQLKVR 9 Unmodified _PRVRQLKVR_ 0 0 0 PKD2L2|p.A379Cfs*12|1|0.25|ENSG00000078795|chr5:137907894-137907895|-/T|frameshift_variant;PKD2L2|p.F477Lfs*7|1|0.39|ENSG00000078795|chr5:137921733-137921733|T/-|frameshift_variant;nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2 PKD2L2|p.A379Cfs*12|1|0.25|ENSG00000078795|chr5:137907894-137907895|-/T|frameshift_variant PKD2L2|p.A379Cfs*12|1|0.25|ENSG00000078795|chr5:137907894-137907895|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3282470703125 2 576.377823 1150.74109 NaN NaN NaN NaN NaN NaN NaN 137.44 1 132.79 132.29 133.29 -4.6413 0 0 0 0.19626 1 27124 27124 0.0033805 0 1 34694 1586 23339 23354 34116 34116 0.17175306127637668 PRWPRERRRRR 11 Unmodified _PRWPRERRRRR_ 0 0 0 REV__ENST00000278823.6_1_11:62366051-62368981:-|nuORF REV__ENST00000278823.6_1_11:62366051-62368981:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3907470703125 2 810.980164 1619.94578 NaN NaN NaN NaN NaN NaN NaN 173.46 1 168.56 168.06 169.06 -4.8977 0 0 0 0.23698 1 34441 34441 0.23584 0.23584 1 + 34695 20298 23340 23355 34117 34117 0.16060057990694077 PRWRHFLLWRR 11 Unmodified _PRWRHFLLWRR_ 0 0 0 REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2671508789062 3 541.647894 1621.92185 0.31655 0.00017146 1.5383 0.00083321 1.8548 0.0010047 541.9820397649736 141.82 0.13748 141.82 141.71 141.85 0 5 3 2 0 0 0 0.89134 1 28273 28273 0 0 1 1570100 + 34696 23438 23341 23356 34118 34118 0.13576824504343676 PRWRRRWSLAW 11 Unmodified _PRWRRRWSLAW_ 0 0 0 REV__ENST00000368696.3_1_1:153600944-153603085:+|nuORF REV__ENST00000368696.3_1_1:153600944-153603085:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4070434570312 2 785.436735 1568.85892 NaN NaN NaN NaN NaN NaN NaN 89.203 1 85.41 84.91 85.91 -3.7926 0 0 0 0.23698 1 17453 17453 1.1933 0.84271 1 + 34697 20948 23342 23357 34119 34119 0.09724258716323675 PRWRRWLLMRE 11 Unmodified _PRWRRWLLMRE_ 0 0 0 ENST00000579248.5_2_18:47017953-47018809:-|nuORF ENST00000579248.5_2_18:47017953-47018809:-|nuORF ENST00000579248.5_2_18:47017953-47018809:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2752685546875 3 533.633145 1597.8776 0.49848 0.00026601 2.7792 0.0014831 3.2777 0.0017491 533.6356204709274 150.57 0.14311 145.37 145.27 145.41 -5.1994 5 3 2 0 0 0 0.89134 1 29185 29185 0.094841 0 1 785400 34698 11483 23343 23358 34120 34120 0.10258052295853304 PRYLFEIR 8 Unmodified _PRYLFEIR_ 0 0 0 nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2 nc|ENSG00000007202|Q14667-2|BLTP2 nc|ENSG00000007202|Q14667-2|BLTP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77685546875 2 547.311284 1092.60801 0.36625 0.00020045 -2.0377 -0.0011152 -1.6714 -0.00091479 547.3101257524543 143.16 0.66309 138.26 137.95 138.61 -4.8982 27 18 2 0 0 0 8448 1 27576 27576 3.2813 0 1 1899000 34699 1017 23344 23359 34121 34121 0.06541441951117122 PSADAQPPWR 10 Unmodified _PSADAQPPWR_ 0 0 0 REV__ZNF219|p.R677W|1|0.38|ENSG00000165804|chr14:21090676-21090676|G/A|missense_variant REV__ZNF219|p.R677W|1|0.38|ENSG00000165804|chr14:21090676-21090676|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2124328613281 3 375.520962 1123.54106 -0.14706 -5.5226E-05 -0.29967 -0.00011253 -0.44674 -0.00016776 375.52089098013164 35.395 0.45074 35.395 35.168 35.619 0 28 12 3 0 0 0 0.91149 1 6481 6481 3.0723 0 1 1910800 + 34700 25570 23345 23360 34122 34122 -0.01577213330642735 PSAINLDSHSY 11 Unmodified _PSAINLDSHSY_ 0 0 0 nc|ENSG00000182732|P49758-12|RGS6;nc|ENSG00000182732|P49758-6|RGS6;nc|ENSG00000182732|P49758-11|RGS6;nc|ENSG00000182732|P49758-7|RGS6;nc|ENSG00000182732|P49758-10|RGS6;nc|ENSG00000182732|P49758-9|RGS6;nc|ENSG00000182732|P49758-16|RGS6;nc|ENSG00000182732|P49758-5|RGS6;nc|ENSG00000182732|P49758-8|RGS6;nc|ENSG00000182732|P49758|RGS6;nc|ENSG00000182732|P49758-13|RGS6;nc|ENSG00000182732|P49758-14|RGS6;nc|ENSG00000182732|P49758-15|RGS6;nc|ENSG00000182732|P49758-2|RGS6;ENSG00000182732|ENST00000553525|RGS6 nc|ENSG00000182732|P49758-12|RGS6 nc|ENSG00000182732|P49758-12|RGS6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2927856445312 2 602.28566 1202.55677 NaN NaN NaN NaN NaN NaN NaN 87.804 1 83.808 83.308 84.308 -3.9953 0 0 0 0.22862 1 16721 16721 9.3831 1.473 1 34701 6807 23346 23361 34123 34123 -0.03640971604227161 PSAKGQGP 8 Unmodified _PSAKGQGP_ 0 0 0 REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3903198242188 1 741.388979 740.381703 0.60027 0.00044503 -0.21492 -0.00015934 0.38535 0.00028569 741.3890547609836 40.015 0.31349 40.015 39.859 40.173 0 11 8 2 0 0 0 8448 1 7437 7437 3.2813 2.873 1 2497700 + 34702 22180 23347 23362 34124 34124 0.0011269811204783764 PSAKGQGP 8 Unmodified _PSAKGQGP_ 0 0 0 REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3919067382812 1 741.388979 740.381703 0.52413 0.00038858 -0.21883 -0.00016224 0.3053 0.00022635 741.3888398080288 42.653 0.32394 39.934 39.768 40.092 -2.7191 12 8 2 0 0 0 8448 1 7991 7991 3.2813 2.873 1 1199900 + 34703 22180 23347 23362 34125 34125 0.0011269811204783764 PSANGSYSEH 10 Unmodified _PSANGSYSEH_ 0 0 0 REV__TCF20|p.R962S|1|0.12|ENSG00000100207|chr22:42212422-42212422|G/T|missense_variant REV__TCF20|p.R962S|1|0.12|ENSG00000100207|chr22:42212422-42212422|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 349.8422546386719 3 350.149194 1047.42575 -0.57239 -0.00020042 0.36139 0.00012654 -0.211 -7.3883E-05 350.14928283780046 39.199 0.35812 36.65 36.431 36.789 -2.5491 16 9 2 0 0 0 1.1218 1 7274 7274 10.151 10.151 1 1471600 + 34704 24779 23348 23363 34126 34126 -0.09606362252293366 PSAPPGNLY 9 Unmodified _PSAPPGNLY_ 0 0 0 nc|ENSG00000156735|O95429-2|BAG4;ENSG00000156735|ENST00000287322|BAG4 nc|ENSG00000156735|O95429-2|BAG4 nc|ENSG00000156735|O95429-2|BAG4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2323913574219 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 73.813 1 70.137 69.637 70.637 -3.6764 0 0 0 0.1599 1 13954 13954 29.082 0.59474 1 34705 5101 23349 23364 34127 34127 -0.010864770279567892 PSAPPGNLY 9 Unmodified _PSAPPGNLY_ 0 0 0 nc|ENSG00000156735|O95429-2|BAG4;ENSG00000156735|ENST00000287322|BAG4 nc|ENSG00000156735|O95429-2|BAG4 nc|ENSG00000156735|O95429-2|BAG4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2316589355469 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 73.714 1 70.12 69.62 70.62 -3.594 0 0 0 0.20294 1 13993 13993 22.736 2.2827 1 34706 5101 23349 23364 34128 34128 -0.010864770279567892 PSAPPGNLY 9 Unmodified _PSAPPGNLY_ 0 0 0 nc|ENSG00000156735|O95429-2|BAG4;ENSG00000156735|ENST00000287322|BAG4 nc|ENSG00000156735|O95429-2|BAG4 nc|ENSG00000156735|O95429-2|BAG4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23907470703125 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 73.785 1 70.191 69.691 70.691 -3.594 0 0 0 0.1599 1 14006 14006 29.082 3.6823 1 34707 5101 23349 23364 34129 34129 -0.010864770279567892 PSAPRAPSVPP 11 Unmodified _PSAPRAPSVPP_ 0 0 0 ENST00000483620.1_1_3:50402099-50403170:-|nuORF ENST00000483620.1_1_3:50402099-50403170:-|nuORF ENST00000483620.1_1_3:50402099-50403170:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2041015625 3 359.201341 1074.58219 -0.34008 -0.00012216 0.58423 0.00020986 0.24415 8.7698E-05 359.20155863676115 15.621 2.1159 15.621 14.914 17.03 0 173 60 4 0 0 0 0.73684 1 2357 2357 9.2438 0.26753 1 6499800 34708 10416 23350 23365 34130 34130 0.04788547708835722 PSAPRAPSVPP 11 Unmodified _PSAPRAPSVPP_ 0 0 0 ENST00000483620.1_1_3:50402099-50403170:-|nuORF ENST00000483620.1_1_3:50402099-50403170:-|nuORF ENST00000483620.1_1_3:50402099-50403170:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20452880859375 3 359.201341 1074.58219 -0.55765 -0.00020031 0.77845 0.00027962 0.2208 7.9311E-05 359.201632736337 16.948 2.5451 15.732 14.727 17.272 -1.2159 232 72 4 0 0 0 0.73684 1 2623 2623 9.2438 0.26753 1 9248000 34709 10416 23350 23365 34131 34131 0.04788547708835722 PSASPPSATT 10 Unmodified _PSASPPSATT_ 0 0 0 REV__nc|ENSG00000099308|O60307|MAST3 REV__nc|ENSG00000099308|O60307|MAST3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2243957519531 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 15.294 1 14.18 13.68 14.68 -1.1142 0 0 0 0.22588 1 2348 2348 9.3831 2.66 1 + 34710 14634 23351 23366 34132 34132 -0.026113886158100286 PSATTNAPPLP 11 Unmodified _PSATTNAPPLP_ 0 0 0 REV__ENST00000261402.6_1_12:106532584-106533082:-|nuORF REV__ENST00000261402.6_1_12:106532584-106533082:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2823486328125 2 533.282389 1064.55022 0.7283 0.00038839 -0.59581 -0.00031774 0.13248 7.065E-05 533.2820797917628 90.257 1.4822 86.213 85.519 87.001 -4.0443 117 41 4 0 0 0 0.43824 1 17225 17225 29.841 1.3461 1 10278000 + 34711 20176 23352 23367 34133 34133 0.02053135235018999 PSATTNAPPLP 11 Unmodified _PSATTNAPPLP_ 0 0 0 REV__ENST00000261402.6_1_12:106532584-106533082:-|nuORF REV__ENST00000261402.6_1_12:106532584-106533082:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2824096679688 2 533.282389 1064.55022 0.23043 0.00012289 -0.12183 -6.4969E-05 0.1086 5.7916E-05 533.2823100455149 89.907 1.4737 86.129 85.484 86.958 -3.7779 122 41 4 0 0 0 0.48798 1 17278 17278 23.79 1.1317 1 11397000 + 34712 20176 23352 23367 34134 34134 0.02053135235018999 PSAWVAGW 8 Unmodified _PSAWVAGW_ 0 0 0 REV__ENST00000380599.8_1_17:7369222-7369633:-|nuORF REV__ENST00000380599.8_1_17:7369222-7369633:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21600341796875 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 55.367 1 52.229 51.729 52.729 -3.1377 0 0 0 0.21486 1 10276 10276 9.3474 0.75416 1 + 34713 21156 23353 23368 34135 34135 -0.023224249912459527 PSCCCCCCGH 10 Unmodified _PSCCCCCCGH_ 0 0 0 ENST00000483722.1_1_6:41166134-41168799:-|nuORF ENST00000483722.1_1_6:41166134-41168799:-|nuORF ENST00000483722.1_1_6:41166134-41168799:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.0838928222656 3 339.084223 1014.23084 NaN NaN NaN NaN NaN NaN NaN 7.912 1 6.8476 6.3476 7.3476 -1.0645 0 0 0 0.22588 1 732 732 0 0 1 34714 10418 23354 23369 34136 34136 -0.2757067851244983 PSCCGCHCF 9 Unmodified _PSCCGCHCF_ 0 0 0 ENST00000585421.5_1_17:76850723-76850948:-|nuORF ENST00000585421.5_1_17:76850723-76850948:-|nuORF ENST00000585421.5_1_17:76850723-76850948:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72332763671875 2 478.647719 955.280884 0.18504 8.8568E-05 -3.0421 -0.0014561 -2.857 -0.0013675 478.64536930710926 76.534 0.59986 76.534 76.31 76.91 0 28 16 2 0 0 0 0.87888 1 14917 14917 4.756 0 1 1585300 34715 11532 23355 23370 34137 34137 -0.1985448452063565 PSCMLVLYR 9 Unmodified _PSCMLVLYR_ 0 0 0 REV__ENSG00000094661|ENST00000641398|OR1I1 REV__ENSG00000094661|ENST00000641398|OR1I1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2776489257812 2 541.28028 1080.54601 NaN NaN NaN NaN NaN NaN NaN 156.41 1 156.41 155.91 156.91 0 0 0 0 0.19512 1 31380 31380 14.957 2.7165 1 + 34716 14595 23356 23371 34138 34138 0.008956312161217284 PSCSAAGC 8 Unmodified _PSCSAAGC_ 0 0 0 REV__STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant REV__STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.12725830078125 2 348.127999 694.241446 NaN NaN NaN NaN NaN NaN NaN 52.754 1 49.87 49.37 50.37 -2.8837 0 0 0 0.21486 1 10045 10045 2.5775 0 1 + 34717 24744 23357 23372 34139 34139 -0.11790545208191361 PSDKDKYAIG 10 Unmodified _PSDKDKYAIG_ 0 0 0 tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1 tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1 tr|U7T1Q1|U7T1Q1_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00530PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7827758789062 2 547.279846 1092.54514 -0.10697 -5.8545E-05 1.4928 0.00081697 1.3858 0.00075843 547.782515376169 81.391 0.73167 77.703 77.349 78.081 -3.6879 35 20 2 0 0 0 0.36162 1 15466 15466 14.405 6.2499 1 2930100 34718 26325 23358 23373 34140 34140 0.002568313724168547 PSDNFSGYCRY 11 Unmodified _PSDNFSGYCRY_ 0 0 0 REV__nc|ENSG00000104970|Q9H7L2|KIR3DX1 REV__nc|ENSG00000104970|Q9H7L2|KIR3DX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 436.84814453125 3 436.848638 1307.52409 NaN NaN NaN NaN NaN NaN NaN 54.881 1 51.745 51.245 52.245 -3.1352 0 0 0 0.23452 1 10132 10132 4.7159 1.9807 1 + 34719 23987 23359 23374 34141 34141 -0.11737501998732114 PSDWNADP 8 Unmodified _PSDWNADP_ 0 0 0 REV__ENSG00000072364|ENST00000265343|AFF4 REV__ENSG00000072364|ENST00000265343|AFF4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 901.1030883789062 1 901.368638 900.361361 0.42697 0.00038486 0.64319 0.00057975 1.0702 0.00096461 901.36985113644 168.52 0.24074 163.59 163.48 163.72 -4.9295 9 6 2 0 0 0 0.99494 1 33226 33226 4.756 2.4533 1 15916000 + 34720 14285 23360 23375 34142 34142 -0.09280517338436312 PSEAHSRIF 9 Unmodified _PSEAHSRIF_ 0 0 0 KMT2A|p.K1938Sfs*43|1|0.42|ENSG00000118058|chr11:118498386-118498386|A/-|frameshift_variant;KMT2A|p.L3197Wfs*15|1|0.31|ENSG00000118058|chr11:118505488-118505488|T/-|frameshift_variant;nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.E1318Kfs*38|1|0.28|ENSG00000118058|chr11:118482028-118482028|A/-|frameshift_variant;KMT2A|p.P1289Ffs*68|1|0.17|ENSG00000118058|chr11:118481943-118481944|-/GT|frameshift_variant;KMT2A|p.K1773Sfs*47|1|0.26|ENSG00000118058|chr11:118494727-118494727|A/-|frameshift_variant KMT2A|p.K1938Sfs*43|1|0.42|ENSG00000118058|chr11:118498386-118498386|A/-|frameshift_variant KMT2A|p.K1938Sfs*43|1|0.42|ENSG00000118058|chr11:118498386-118498386|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2683715820312 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 117.71 1 117.71 117.21 118.21 0 0 0 0 0.19704 1 23186 23186 1.2148 0 1 34721 3014 23361 23376 34143 34143 3.401640651645721E-05 PSECSREWW 9 Unmodified _PSECSREWW_ 0 0 0 ENST00000514308.3_1_4:186425710-186427744:-|nuORF ENST00000514308.3_1_4:186425710-186427744:-|nuORF ENST00000514308.3_1_4:186425710-186427744:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2626342773438 2 590.248023 1178.48149 NaN NaN NaN NaN NaN NaN NaN 124.78 1 120.13 119.63 120.63 -4.6495 0 0 0 0.19451 1 24010 24010 0.029283 0 1 34722 10771 23362 23377 34144 34144 -0.10060852336323478 PSEDSNDGCDN 11 Unmodified _PSEDSNDGCDN_ 0 0 0 REV__ENSG00000134569|ENST00000378623|LRP4 REV__ENSG00000134569|ENST00000378623|LRP4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3180541992188 2 576.690932 1151.36731 NaN NaN NaN NaN NaN NaN NaN 18.287 1 16.773 16.273 17.273 -1.5148 0 0 0 0.22632 1 2702 2702 0 0 1 + 34723 16216 23363 23378 34145 34145 -0.2023183167971183 PSEKEMLK 8 Unmodified _PSEKEMLK_ 0 0 0 SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant;SACS|p.K2931Nfs*22|1|0.23|ENSG00000151835|chr13:23335083-23335083|T/-|frameshift_variant;SACS|p.L3102*|1|0.33|ENSG00000151835|chr13:23334571-23334571|A/-|frameshift_variant;SACS|p.I3485Lfs*10|1|0.24|ENSG00000151835|chr13:23333423-23333423|T/-|frameshift_variant;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2378234863281 2 481.254785 960.495018 0.028953 1.3934E-05 -2.5789 -0.0012411 -2.55 -0.0012272 481.25356262062274 24.184 0.64841 24.184 23.827 24.475 0 29 18 2 0 0 0 8448 1 4165 4165 20.411 0 1 1849200 34724 4892 23364 23379 34146 34146 0.013190054429287557 PSERDQAC 8 Unmodified _PSERDQAC_ 0 0 0 REV__nc|ENSG00000187239|Q96RU3-4|FNBP1 REV__nc|ENSG00000187239|Q96RU3-4|FNBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76483154296875 2 453.192716 904.37088 0.10837 4.9113E-05 0.74824 0.0003391 0.85661 0.00038821 453.1930819868677 20.006 0.75731 18.609 18.173 18.93 -1.3966 43 21 3 0 0 0 0.68128 1 3312 3312 16.942 0 1 1526100 + 34725 19080 23365 23380 34147 34147 -0.08513072324547011 PSERDQAC 8 Unmodified _PSERDQAC_ 0 0 0 REV__nc|ENSG00000187239|Q96RU3-4|FNBP1 REV__nc|ENSG00000187239|Q96RU3-4|FNBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 453.192716 904.37088 0.19755 8.9526E-05 0.88285 0.0004001 1.0804 0.00048963 453.1931057538776 18.485 0.80057 18.485 18.057 18.858 0 -0.034988 -0.00011616 NaN 16.942 56 22 3 NaN NaN NaN NaN 0 NaN NaN 0 3085500 + 34726 19080 23365 23380 -0.08513072324547011 PSEYDTPLY 9 Unmodified _PSEYDTPLY_ 0 0 0 ENSG00000183576|ENST00000331768|SETD3;nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3 ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7930908203125 2 542.745305 1083.47606 0.28281 0.00015349 -0.031921 -1.7325E-05 0.25089 0.00013617 542.7452323048515 99.181 0.78948 95.224 94.866 95.656 -3.9564 51 22 3 0 0 0 0.25702 1 19025 19025 34.102 20.196 1 4589000 34727 6854 23366 23381 34148 34148 -0.0623425264711841 PSEYDTPLY 9 Unmodified _PSEYDTPLY_ 0 0 0 ENSG00000183576|ENST00000331768|SETD3;nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3 ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.745305 1083.47606 0.25721 0.0001396 0.00016193 8.7888E-08 0.25738 0.00013969 542.7451957293638 99.488 0.6937 95.356 94.992 95.685 -4.1326 0.058996 7.9488E-05 NaN 34.102 39 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4844600 34728 6854 23366 23381 -0.0623425264711841 PSEYDTPLY 9 Unmodified _PSEYDTPLY_ 0 0 0 ENSG00000183576|ENST00000331768|SETD3;nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3 ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.745305 1083.47606 0.25801 0.00014003 -0.19494 -0.0001058 0.063073 3.4233E-05 542.7452344770811 99.579 0.6079 95.31 94.999 95.607 -4.2692 0.0134 -0.00013229 NaN 34.102 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4472500 34729 6854 23366 23381 -0.0623425264711841 PSEYLGENAEA 11 Unmodified _PSEYLGENAEA_ 0 0 0 tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1 tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1 tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.261474609375 2 590.26185 1178.50915 NaN NaN NaN NaN NaN NaN NaN 178.2 1 173.41 172.91 173.91 -4.7898 0 0 0 0.22632 1 36459 36459 0.00056442 0 1 34730 26481 23367 23382 34149 34149 -0.072966705951103 PSFFRLSC 8 Unmodified _PSFFRLSC_ 0 0 0 REV__nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 REV__nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7366638183594 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 93.561 1 89.57 89.07 90.07 -3.9907 0 0 0 0.23107 1 18328 18328 0.25148 0 1 + 34731 18348 23368 23383 34150 34150 -0.020938266631105762 PSFHGCCATGT 11 Unmodified _PSFHGCCATGT_ 0 0 0 REV__nc|ENSG00000107829|P57775|FBXW4 REV__nc|ENSG00000107829|P57775|FBXW4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.48162841796875 3 360.81276 1079.41645 0.20432 7.3722E-05 0.87691 0.0003164 1.0812 0.00039012 360.8130344817254 98.569 0.76988 94.3 93.987 94.757 -4.2692 49 21 3 0 0 0 0.54604 1 18824 18824 8.4443 2.2385 1 4538800 + 34732 15093 23369 23384 34151 34151 -0.12008170133822205 PSFHGCCATGT 11 Unmodified _PSFHGCCATGT_ 0 0 0 REV__nc|ENSG00000107829|P57775|FBXW4 REV__nc|ENSG00000107829|P57775|FBXW4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 360.81276 1079.41645 -0.22719 -8.1975E-05 1.3375 0.00048258 1.1103 0.0004006 360.8132125290055 98.386 0.76919 94.253 93.876 94.645 -4.1326 0.035472 1.7187E-05 NaN 8.4443 54 21 3 NaN NaN NaN NaN 0 NaN NaN 0 4447100 + 34733 15093 23369 23384 -0.12008170133822205 PSFHGCCATGT 11 Unmodified _PSFHGCCATGT_ 0 0 0 REV__nc|ENSG00000107829|P57775|FBXW4 REV__nc|ENSG00000107829|P57775|FBXW4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 360.81276 1079.41645 0.20432 7.3722E-05 0.87691 0.0003164 1.0812 0.00039012 360.8130344817254 98.569 0.76988 94.3 93.987 94.757 -4.2692 0.082355 -0.00048135 NaN 8.4443 49 21 3 NaN NaN NaN NaN 0 NaN NaN 0 4538800 + 34734 15093 23369 23384 -0.12008170133822205 PSFHGCCATGT 11 Unmodified _PSFHGCCATGT_ 0 0 0 REV__nc|ENSG00000107829|P57775|FBXW4 REV__nc|ENSG00000107829|P57775|FBXW4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 360.81276 1079.41645 -0.59327 -0.00021406 1.7283 0.0006236 1.135 0.00040954 360.8132984850067 98.236 0.64115 94.279 93.957 94.599 -3.9564 0.061625 0.00044025 NaN 8.4443 38 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2470600 + 34735 15093 23369 23384 -0.12008170133822205 PSFPYSYRY 9 Unmodified _PSFPYSYRY_ 0 0 0 nc|ENSG00000101892|Q9UN42-2|ATP1B4;ENSG00000101892|ENST00000218008|ATP1B4 nc|ENSG00000101892|Q9UN42-2|ATP1B4 nc|ENSG00000101892|Q9UN42-2|ATP1B4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2554931640625 2 590.277106 1178.53966 NaN NaN NaN NaN NaN NaN NaN 119.31 1 119.31 118.81 119.81 0 0 0 0 0.21848 1 23506 23506 18.135 4.2289 1 34736 2094 23370 23385 34152 34152 -0.042468474193810835 PSFVRPVR 8 Unmodified _PSFVRPVR_ 0 0 0 REV__ENST00000478000.5_1_7:944799-944931:-|nuORF REV__ENST00000478000.5_1_7:944799-944931:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73785400390625 2 479.285069 956.555585 -0.061773 -2.9607E-05 -1.5887 -0.00076146 -1.6505 -0.00079106 479.2842709389175 119.6 0.45284 119.6 119.31 119.76 0 21 12 2 0 0 0 0.86208 1 23527 23527 0.25148 0.12861 1 1820600 + 34737 22130 23371 23386 34153 34153 0.07556903608190169 PSGISKMEL 9 Unmodified _PSGISKMEL_ 0 0 0 REV__nc|ENSG00000166479|Q96JJ7-2|TMX3 REV__nc|ENSG00000166479|Q96JJ7-2|TMX3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2529296875 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 125.71 1 121.06 120.56 121.56 -4.6495 0 0 0 0.22962 1 24189 24189 14.838 0.93222 1 + 34738 17854 23372 23387 34154 34154 0.013190054429401243 PSGQAPPP 8 Unmodified _PSGQAPPP_ 0 0 0 REV__ZNF579|p.P264Rfs*141|1|0.3|ENSG00000218891|chr19:55578854-55578854|C/-|frameshift_variant REV__ZNF579|p.P264Rfs*141|1|0.3|ENSG00000218891|chr19:55578854-55578854|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2198181152344 2 375.692678 749.370804 0.032503 1.2211E-05 -0.0211 -7.9271E-06 0.011403 4.2839E-06 375.6925918704593 50.174 0.98871 50.174 49.753 50.741 0 50 28 2 0 0 0 1.0095 1 9430 9430 10.183 0 1 3815000 + 34739 19069 23373 23388 34155 34155 -0.01390704262246345 PSGQRQPDPP 10 Unmodified _PSGQRQPDPP_ 0 0 0 ENST00000366584.8_1_1:236686911-236687247:+|nuORF ENST00000366584.8_1_1:236686911-236687247:+|nuORF ENST00000366584.8_1_1:236686911-236687247:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.271728515625 2 539.767437 1077.52032 -0.39058 -0.00021082 0.61866 0.00033393 0.22808 0.00012311 539.7677454969887 16.294 1.4492 15.072 14.609 16.058 -1.2219 128 41 4 0 0 0 0.73657 1 2298 2298 12.241 10.759 1 8310700 34740 9047 23374 23389 34156 34156 -0.01533803710299253 PSGRPASPDP 10 Unmodified _PSGRPASPDP_ 0 0 0 ENST00000206249.7_1_6:152128699-152128993:+|nuORF ENST00000206249.7_1_6:152128699-152128993:+|nuORF ENST00000206249.7_1_6:152128699-152128993:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25494384765625 2 490.743431 979.472308 0.21352 0.00010478 -0.17697 -8.6848E-05 0.03655 1.7937E-05 490.7433005109238 19.43 0.91112 18.033 17.467 18.379 -1.3966 76 25 4 0 0 0 0.25241 1 3171 3171 57.722 0 1 16603000 34741 8092 23375 23390 34157 34157 -0.018248776303494196 PSGSPRRSSL 10 Unmodified _PSGSPRRSSL_ 0 0 0 ENST00000222747.7_1_7:120497939-120498116:-|nuORF ENST00000222747.7_1_7:120497939-120498116:-|nuORF ENST00000222747.7_1_7:120497939-120498116:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2824096679688 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 134.55 1 129.91 129.41 130.41 -4.6399 0 0 0 0.22588 1 26532 26532 9.3831 0.63772 1 34742 8138 23376 23391 34158 34158 0.032381890436681715 PSGTEVTLA 9 Unmodified _PSGTEVTLA_ 0 0 0 ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1 ENST00000472831.5_1_5:176884436-176895158:-|nuORF ENST00000472831.5_1_5:176884436-176895158:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21484375 2 437.729458 873.444362 0.22135 9.6891E-05 -0.11101 -4.8592E-05 0.11034 4.83E-05 437.7293552833982 27.368 0.41344 27.368 27.183 27.597 0 17 11 2 0 0 0 0.79204 1 4870 4870 3.9444 3.9444 1 837280 34743 2761 23377 23392 34159 34159 0.002577993895670261 PSGTEVTLA 9 Unmodified _PSGTEVTLA_ 0 0 0 ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1 ENST00000472831.5_1_5:176884436-176895158:-|nuORF ENST00000472831.5_1_5:176884436-176895158:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 437.729458 873.444362 0.55812 0.00024431 -0.29161 -0.00012765 0.26651 0.00011666 437.7292059738396 28.999 0.52842 27.043 26.81 27.338 -1.9561 -0.10221 -0.00018627 NaN 3.9444 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 666610 34744 2761 23377 23392 0.002577993895670261 PSGTEVTLA 9 Unmodified _PSGTEVTLA_ 0 0 0 ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1 ENST00000472831.5_1_5:176884436-176895158:-|nuORF ENST00000472831.5_1_5:176884436-176895158:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 437.729458 873.444362 0.24266 0.00010622 0.22533 9.8635E-05 0.46799 0.00020485 437.7293724192536 29.021 0.38469 27.025 26.864 27.248 -1.9962 -0.12025 0.00026629 NaN 3.9444 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 386970 34745 2761 23377 23392 0.002577993895670261 PSHTTHPTQPT 11 Unmodified _PSHTTHPTQPT_ 0 0 0 REV__MUC6|p.N1717Tfs*10|1|0.03|ENSG00000184956|chr11:1017653-1017653|G/-|frameshift_variant REV__MUC6|p.N1717Tfs*10|1|0.03|ENSG00000184956|chr11:1017653-1017653|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2913208007812 2 602.291276 1202.568 NaN NaN NaN NaN NaN NaN NaN 71.659 1 68.032 67.532 68.532 -3.6275 0 0 0 0.23476 1 13519 13519 4.5289 0.58447 1 + 34746 18924 23378 23393 34160 34160 -0.025181495101151086 PSIKKYSGWD 10 Unmodified _PSIKKYSGWD_ 0 0 0 ENST00000525598.1_1_11:118984241-118984860:+|nuORF ENST00000525598.1_1_11:118984241-118984860:+|nuORF ENST00000525598.1_1_11:118984241-118984860:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.25341796875 2 590.803488 1179.59242 0.61015 0.00036048 -2.3793 -0.0014057 -1.7692 -0.0010452 590.8025324607236 19.422 0.46001 18.025 17.884 18.344 -1.3966 16 12 2 0 0 0 0.871 1 3266 3266 10.074 3.3508 1 1614300 34747 10898 23379 23394 34161 34161 0.009811106434199246 PSIKKYSGWD 10 Unmodified _PSIKKYSGWD_ 0 0 0 ENST00000525598.1_1_11:118984241-118984860:+|nuORF ENST00000525598.1_1_11:118984241-118984860:+|nuORF ENST00000525598.1_1_11:118984241-118984860:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 590.803488 1179.59242 0.28889 0.00017068 -3.882 -0.0022935 -3.5931 -0.0021228 590.8012281758895 17.896 0.32666 17.896 17.731 18.057 0 -0.082002 -0.0003002 NaN 10.074 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2817200 34748 10898 23379 23394 0.009811106434199246 PSIPRLNGYY 10 Unmodified _PSIPRLNGYY_ 0 0 0 REV__nc|ENSG00000139291|Q96HH6-2|TMEM19 REV__nc|ENSG00000139291|Q96HH6-2|TMEM19 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2490234375 2 590.31148 1178.60841 NaN NaN NaN NaN NaN NaN NaN 124.62 1 119.97 119.47 120.47 -4.6495 0 0 0 0.22535 1 23980 23980 20.454 1.1966 1 + 34749 16512 23380 23395 34162 34162 0.026248168803022054 PSKKGASS 8 Unmodified _PSKKGASS_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;UBE3A|p.K226Nfs*2|1|0.34|ENSG00000114062|chr15:25371505-25371505|T/-|frameshift_variant;UBE3A|p.N105Tfs*7|1|0.35|ENSG00000114062|chr15:25375523-25375523|G/-|frameshift_variant nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21124267578125 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 100.81 1 96.817 96.317 97.317 -3.9895 0 0 0 0.2396 1 19372 19372 0.12286 0 1 34750 2773 23381 23396 34163 34163 0.01812967283535727 PSLDQILQPA 10 Unmodified _PSLDQILQPA_ 0 0 0 ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;ZFYVE26|p.D2513Mfs*3|1|0.29|ENSG00000072121|chr14:67748519-67748519|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF ENST00000554523.5_1_14:68228796-68282710:-|nuORF ENST00000554523.5_1_14:68228796-68282710:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2652587890625 2 541.298039 1080.58152 NaN NaN NaN NaN NaN NaN NaN 176.46 1 171.67 171.17 172.17 -4.7898 0 0 0 2.8426 1 36083 36083 0.043787 0 1 34751 1458 23382 23397 34164 34164 0.04445708269145143 PSLFLGNERLQ 11 Unmodified _PSLFLGNERLQ_ 0 0 0 ENST00000538010.5_1_12:122499032-122499182:+|nuORF ENST00000538010.5_1_12:122499032-122499182:+|nuORF ENST00000538010.5_1_12:122499032-122499182:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2381896972656 3 425.234822 1272.68264 -1.6318 -0.00069389 -1.5703 -0.00066775 -3.2021 -0.0013616 425.23421781374145 17.139 0.21441 15.624 15.483 15.698 -1.5148 13 5 3 0 0 0 0.96165 1 2453 2453 4.4062 2.1534 1 404450 34752 11045 23383 23398 34165 34165 0.05720159971860994 PSLHRRRKEPC 11 Unmodified _PSLHRRRKEPC_ 0 0 0 ENST00000328788.5_1_9:85857929-85858100:-|nuORF ENST00000328788.5_1_9:85857929-85858100:-|nuORF ENST00000328788.5_1_9:85857929-85858100:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24462890625 3 460.254333 1377.74117 NaN NaN NaN NaN NaN NaN NaN 96.51 1 92.413 91.913 92.913 -4.0978 0 0 0 0.22632 1 18927 18927 1.4551 0 1 34753 8758 23384 23399 34166 34166 0.06740938065331648 PSLLRTSR 8 Unmodified _PSLLRTSR_ 0 0 0 ENST00000533114.1_1_8:145692923-145693538:+|nuORF ENST00000533114.1_1_8:145692923-145693538:+|nuORF ENST00000533114.1_1_8:145692923-145693538:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2504577636719 2 465.279983 928.545414 NaN NaN NaN NaN NaN NaN NaN 72.547 1 72.547 72.047 73.047 0 0 0 0 0.20896 1 14070 14070 18.135 0 1 34754 10989 23385 23400 34167 34167 0.07828295882950442 PSLTKAPGC 9 Unmodified _PSLTKAPGC_ 0 0 0 nc|ENSG00000213213|Q5T5S1-4|CCDC183;ENST00000430612.5_1_9:139694306-139700853:+|nuORF;ENST00000371682.7_1_9:139690828-139700853:+|nuORF nc|ENSG00000213213|Q5T5S1-4|CCDC183 nc|ENSG00000213213|Q5T5S1-4|CCDC183 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2295837402344 2 437.228571 872.442588 NaN NaN NaN NaN NaN NaN NaN 55.305 1 52.421 51.921 52.921 -2.8837 0 0 0 0.22621 1 10580 10580 15.847 1.2655 1 34755 9165 23386 23401 34168 34168 0.0012646709997170547 PSLVNSTVY 9 Unmodified _PSLVNSTVY_ 0 0 0 nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000467160.1_1_19:19756233-19756817:-|nuORF;ENST00000473243.5_1_19:19756247-19758388:-|nuORF;nc|ENSG00000105726|Q9HD20-3|ATP13A1;ENST00000469641.5_1_19:19756247-19760762:-|nuORF nc|ENSG00000105726|Q9HD20-2|ATP13A1 nc|ENSG00000105726|Q9HD20-2|ATP13A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26019287109375 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 169.63 1 169.63 169.13 170.13 0 0 0 0 0.23508 1 34824 34824 12.532 1.7076 1 34756 2337 23387 23402 34169 34169 0.012100613149868877 PSMLRKNQL 9 Unmodified _PSMLRKNQL_ 0 0 0 DCAF4L2|p.N24K|1|0.07|ENSG00000176566|chr8:87873900-87873900|A/T|missense_variant;ENSG00000176566|ENST00000319675|DCAF4L2 DCAF4L2|p.N24K|1|0.07|ENSG00000176566|chr8:87873900-87873900|A/T|missense_variant DCAF4L2|p.N24K|1|0.07|ENSG00000176566|chr8:87873900-87873900|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.785888671875 2 543.808051 1085.60155 0.37029 0.00020137 1.1352 0.00061733 1.5055 0.0008187 543.8083211723947 110.71 0.70132 110.71 110.33 111.03 0 40 19 3 0 0 0 0.39189 1 21783 21783 26.268 0.86883 1 2524200 34757 786 23388 23403 34170 34170 0.06217180728117455 PSNQHGIP 8 Unmodified _PSNQHGIP_ 0 0 0 ENST00000519161.1_1_7:143056725-143059696:-|nuORF ENST00000519161.1_1_7:143056725-143059696:-|nuORF ENST00000519161.1_1_7:143056725-143059696:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25146484375 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 108.26 1 104.12 103.62 104.62 -4.135 0 0 0 0.23664 1 20829 20829 3.8459 3.7076 1 34758 10816 23389 23404 34171 34171 -0.01620514484955038 PSNYLSVQA 9 Unmodified _PSNYLSVQA_ 0 0 0 REV__ENSG00000173548|ENST00000308527|SNX33 REV__ENSG00000173548|ENST00000308527|SNX33 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2575378417969 2 489.748182 977.481811 0.16487 8.0746E-05 -0.22011 -0.0001078 -0.055239 -2.7053E-05 489.748045603736 38.301 0.42033 35.859 35.704 36.125 -2.4419 23 11 3 0 0 0 0.42289 1 6789 6789 13.906 0 1 6256700 + 34759 18361 23390 23405 34172 34172 -0.007831093448203319 PSNYNSNELN 10 Unmodified _PSNYNSNELN_ 0 0 0 ENST00000493849.5_1_1:161182144-161183624:+|nuORF ENST00000493849.5_1_1:161182144-161183624:+|nuORF ENST00000493849.5_1_1:161182144-161183624:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3320922851562 2 576.251817 1150.48908 NaN NaN NaN NaN NaN NaN NaN 152.89 1 147.63 147.13 148.13 -5.2669 0 0 0 2.8426 1 29638 29638 0.063865 0.032455 1 34760 10551 23391 23406 34173 34173 -0.08014421535040128 PSPETRELA 9 Unmodified _PSPETRELA_ 0 0 0 REV__ENSG00000107140|ENST00000336395|TESK1 REV__ENSG00000107140|ENST00000336395|TESK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 501.76275634765625 2 500.258914 998.503274 0.61867 0.0003095 -0.28002 -0.00014008 0.33865 0.00016941 500.2587318504705 78.965 0.83396 78.965 78.506 79.34 0 74 23 4 0 0 0 0.45972 1 15371 15371 10.899 0 1 16330000 + 34761 15074 23392 23407 34174 34174 0.0039627568389732915 PSPETRELA 9 Unmodified _PSPETRELA_ 0 0 0 REV__ENSG00000107140|ENST00000336395|TESK1 REV__ENSG00000107140|ENST00000336395|TESK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 500.258914 998.503274 -0.069555 -3.4796E-05 0.44392 0.00022208 0.37437 0.00018728 500.25911362056434 83.042 0.79784 79.168 78.668 79.466 -3.8736 0.084686 0.00015603 NaN 10.899 59 22 4 NaN NaN NaN NaN 0 NaN NaN 0 10922000 + 34762 15074 23392 23407 0.0039627568389732915 PSPETRELA 9 Unmodified _PSPETRELA_ 0 0 0 REV__ENSG00000107140|ENST00000336395|TESK1 REV__ENSG00000107140|ENST00000336395|TESK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 500.258914 998.503274 -0.25573 -0.00012793 0.60506 0.00030269 0.34933 0.00017476 500.2591811100439 82.816 0.86143 79.117 78.66 79.521 -3.6985 0.033775 0.00031726 NaN 10.899 62 24 3 NaN NaN NaN NaN 0 NaN NaN 0 14522000 + 34763 15074 23392 23407 0.0039627568389732915 PSPEVRPF 8 Unmodified _PSPEVRPF_ 0 0 0 REV__ENSG00000159337|ENST00000290472|PLA2G4D REV__ENSG00000159337|ENST00000290472|PLA2G4D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2488098144531 2 464.747985 927.481417 -0.21179 -9.843E-05 -2.4009 -0.0011158 -2.6127 -0.0012143 464.7458357699406 42.29 0.90665 39.571 38.933 39.84 -2.7191 54 25 3 0 0 0 8448 1 7915 7915 1.4551 0 1 5552700 + 34764 17368 23393 23408 34175 34175 0.014775157260032756 PSPEVRPF 8 Unmodified _PSPEVRPF_ 0 0 0 REV__ENSG00000159337|ENST00000290472|PLA2G4D REV__ENSG00000159337|ENST00000290472|PLA2G4D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24993896484375 2 464.747985 927.481417 -0.09948 -4.6233E-05 -2.1425 -0.00099573 -2.242 -0.001042 464.745858840736 42.293 1.0201 39.642 38.9 39.92 -2.651 60 28 3 0 0 0 0.40661 1 7647 7647 32.117 0 1 3630700 + 34765 17368 23393 23408 34176 34176 0.014775157260032756 PSPEVRPF 8 Unmodified _PSPEVRPF_ 0 0 0 REV__ENSG00000159337|ENST00000290472|PLA2G4D REV__ENSG00000159337|ENST00000290472|PLA2G4D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2496643066406 2 464.747985 927.481417 0.019217 8.9312E-06 -2.7405 -0.0012737 -2.7213 -0.0012647 464.74575053579446 42.233 0.8832 39.627 38.98 39.863 -2.606 51 24 3 0 0 0 0.56049 1 7618 7618 24.674 0 1 4717600 + 34766 17368 23393 23408 34177 34177 0.014775157260032756 PSPRKKSTRGF 11 Unmodified _PSPRKKSTRGF_ 0 0 0 ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant ENSG00000153165|ENST00000409886|RGPD3 ENSG00000153165|ENST00000409886|RGPD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7723388671875 2 630.862203 1259.70985 NaN NaN NaN NaN NaN NaN NaN 119.26 1 119.26 118.76 119.76 0 0 0 0 0.22632 1 23498 23498 0.026206 0 1 34767 4959 23394 23409 34178 34178 0.09038688302871378 PSPRVGWL 8 Unmodified _PSPRVGWL_ 0 0 0 ENST00000503057.5_2_4:41540302-41600955:+|nuORF ENST00000503057.5_2_4:41540302-41600955:+|nuORF ENST00000503057.5_2_4:41540302-41600955:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 456.25067138671875 2 456.25852 910.502486 NaN NaN NaN NaN NaN NaN NaN 99.905 1 99.905 99.405 100.4 0 0 0 0 0.21486 1 19594 19594 8.5933 0 1 34768 10640 23395 23410 34179 34179 0.043655258255284934 PSPSCGRTY 9 Unmodified _PSPSCGRTY_ 0 0 0 ENSG00000047662|ENST00000265018|FAM184B ENSG00000047662|ENST00000265018|FAM184B ENSG00000047662|ENST00000265018|FAM184B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1254577636719 3 323.148248 966.422915 NaN NaN NaN NaN NaN NaN NaN 104.94 1 100.72 100.22 101.22 -4.2183 0 0 0 0.23508 1 20648 20648 0.86438 0.087843 1 34769 1223 23396 23411 34180 34180 -0.06163908910787086 PSPSTERAA 9 Unmodified _PSPSTERAA_ 0 0 0 REV__ENST00000534922.5_1_12:133201285-133201540:-|nuORF REV__ENST00000534922.5_1_12:133201285-133201540:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2398681640625 2 458.230156 914.445759 -1.0686 -0.00048965 1.349 0.00061817 0.28046 0.00012851 458.2306839667985 19.113 0.34463 17.478 17.254 17.598 -1.6351 14 9 2 0 0 0 0.77734 1 2850 2850 13.906 0.86358 1 259660 + 34770 22807 23397 23412 34181 34181 -0.014885665216752386 PSPSVRWQS 9 Unmodified _PSPSVRWQS_ 0 0 0 REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|58|3|sense REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|58|3|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2697143554688 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 28.55 1 26.553 26.053 27.053 -1.9962 0 0 0 0.1761 1 4823 4823 26.884 6.43 1 + 34771 23628 23398 23413 34182 34182 3.401640651645721E-05 PSQITSEPEEQ 11 Unmodified _PSQITSEPEEQ_ 0 0 0 SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant;SLX4|p.P1414Hfs*36|1|0.43|ENSG00000188827|chr16:3589397-3589397|G/-|frameshift_variant;nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4 SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7648315429688 2 622.785689 1243.55683 0.40126 0.0002499 -0.14079 -8.7683E-05 0.26047 0.00016222 622.785547867187 61.898 0.48066 58.658 58.413 58.894 -3.2395 21 13 2 0 0 0 0.72351 1 11567 11567 10.151 0.076642 1 1760300 34772 7201 23399 23414 34183 34183 -0.05521016394891376 PSQLYGKG 8 Unmodified _PSQLYGKG_ 0 0 0 ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant;ENSG00000198597|ENST00000355537|ZNF536 ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2354736328125 2 425.226885 848.439217 0.06368 2.7078E-05 0.42231 0.00017958 0.48599 0.00020665 425.2270015377335 28.549 0.2795 26.553 26.381 26.66 -1.9962 10 7 2 0 0 0 0.60622 1 4809 4809 21.747 0 1 575070 34773 7462 23400 23415 34184 34184 0.008935403176337786 PSQLYGKG 8 Unmodified _PSQLYGKG_ 0 0 0 ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant;ENSG00000198597|ENST00000355537|ZNF536 ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 425.226885 848.439217 0.16084 6.8394E-05 0.033106 1.4078E-05 0.19395 8.2471E-05 425.22688790928066 26.743 0.41257 26.743 26.495 26.907 0 0.13306 5.1356E-05 NaN 21.747 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1196700 34774 7462 23400 23415 0.008935403176337786 PSQLYGKG 8 Unmodified _PSQLYGKG_ 0 0 0 ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant;ENSG00000198597|ENST00000355537|ZNF536 ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 425.226885 848.439217 0.61583 0.00026187 -0.36219 -0.00015401 0.25364 0.00010785 425.22667350512467 28.498 0.37688 26.542 26.364 26.741 -1.9561 -0.067985 -0.00028482 NaN 21.747 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 738930 34775 7462 23400 23415 0.008935403176337786 PSQLYGKG 8 Unmodified _PSQLYGKG_ 0 0 0 ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant;ENSG00000198597|ENST00000355537|ZNF536 ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 425.226885 848.439217 0.23937 0.00010179 -0.040556 -1.7245E-05 0.19881 8.4541E-05 425.2268545020962 28.357 0.38026 26.602 26.39 26.77 -1.7552 -0.0079244 -1.129E-05 NaN 21.747 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 667450 34776 7462 23400 23415 0.008935403176337786 PSRARHFSE 9 Unmodified _PSRARHFSE_ 0 0 0 HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant;HTATSF1|p.V610Cfs*2|1|0.32|ENSG00000102241|chrX:136511568-136511568|A/-|frameshift_variant;ENSG00000102241|ENST00000218364|HTATSF1 HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7748413085938 2 543.775597 1085.53664 NaN NaN NaN NaN NaN NaN NaN 29.559 1 27.583 27.083 28.083 -1.9763 0 0 0 0.23508 1 5315 5315 7.9102 0.62092 1 34777 2120 23401 23416 34185 34185 -0.002706777535195215 PSRKRGRRPR 10 Unmodified _PSRKRGRRPR_ 0 0 0 ENSG00000156853|ENST00000287461|ZNF689 ENSG00000156853|ENST00000287461|ZNF689 ENSG00000156853|ENST00000287461|ZNF689 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 633.3903198242188 2 633.392328 1264.7701 NaN NaN NaN NaN NaN NaN NaN 166.78 1 161.84 161.34 162.34 -4.948 0 0 0 2.8426 1 32738 32738 0.0013812 0 1 34778 5105 23402 23417 34186 34186 0.14830843476647715 PSRKSRAK 8 Unmodified _PSRKSRAK_ 0 0 0 ENSG00000165349|ENST00000374299|SLC7A3 ENSG00000165349|ENST00000374299|SLC7A3 ENSG00000165349|ENST00000374299|SLC7A3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2505187988281 2 465.2856 928.556647 NaN NaN NaN NaN NaN NaN NaN 147.81 1 142.66 142.16 143.16 -5.1557 0 0 0 0.23811 1 28608 28608 0.063987 0.060607 1 34779 5621 23403 23418 34187 34187 0.08951117977085232 PSRLLRRPSP 10 Unmodified _PSRLLRRPSP_ 0 0 0 REV__nc|ENSG00000182095|O15417-2|TNRC18 REV__nc|ENSG00000182095|O15417-2|TNRC18 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2727661132812 2 589.859464 1177.70437 NaN NaN NaN NaN NaN NaN NaN 124.48 1 119.91 119.41 120.41 -4.5757 0 0 0 0.22588 1 24546 24546 10.074 3.3508 1 + 34780 24199 23404 23419 34188 34188 0.12263009511070777 PSRLPGGGGL 10 Unmodified _PSRLPGGGGL_ 0 0 0 REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1 REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.0345458984375 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 13.593 1 13.593 13.093 14.093 0 0 0 0 0.22588 1 1972 1972 0 0 1 + 34781 15116 23405 23420 34189 34189 0.04484320474591641 PSRLPGGGGL 10 Unmodified _PSRLPGGGGL_ 0 0 0 REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1 REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.05224609375 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 13.609 1 13.609 13.109 14.109 0 0 0 0 0.22588 1 1976 1976 0 0 1 + 34782 15116 23405 23420 34190 34190 0.04484320474591641 PSRLPGGGGL 10 Unmodified _PSRLPGGGGL_ 0 0 0 REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1 REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.0397033691406 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 22.604 1 21.15 20.65 21.65 -1.4535 0 0 0 0.22588 1 3611 3611 0 0 1 + 34783 15116 23405 23420 34191 34191 0.04484320474591641 PSRWMWAG 8 Unmodified _PSRWMWAG_ 0 0 0 REV__ENST00000368194.7_1_1:157015019-157015145:-|nuORF REV__ENST00000368194.7_1_1:157015019-157015145:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.0098571777344 3 330.825328 989.454156 0.26296 8.6995E-05 0.16253 5.377E-05 0.4255 0.00014077 330.8254161426534 28.218 0.56072 26.463 26.14 26.7 -1.7552 25 15 2 0 0 0 1.0265 1 4742 4742 1.6526 0 1 1237600 + 34784 20936 23406 23421 34192 34192 -0.04099291086026824 PSSCHWWRW 9 Unmodified _PSSCHWWRW_ 0 0 0 SEZ6|p.P892Hfs*50|1|0.15|ENSG00000063015|chr17:28957062-28957062|G/-|frameshift_variant SEZ6|p.P892Hfs*50|1|0.15|ENSG00000063015|chr17:28957062-28957062|G/-|frameshift_variant SEZ6|p.P892Hfs*50|1|0.15|ENSG00000063015|chr17:28957062-28957062|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7758178710938 2 622.774542 1243.53453 NaN NaN NaN NaN NaN NaN NaN 175.29 1 170.4 169.9 170.9 -4.8916 0 0 0 0.19652 1 34939 34939 0.029283 0.023327 1 34785 25656 23407 23422 34193 34193 -0.07749429762998261 PSSDTSKLAA 10 Unmodified _PSSDTSKLAA_ 0 0 0 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2723693847656 2 488.750921 975.48729 0.20745 0.00010139 -0.34375 -0.00016801 -0.13629 -6.6614E-05 488.7507332804082 35.659 0.79086 35.659 35.134 35.925 0 62 22 4 0 0 0 0.61964 1 6516 6516 18.146 0 1 19977000 34786 4021 23408 23423 34194 34194 -0.0014343055299832486 PSSDTSKLAA 10 Unmodified _PSSDTSKLAA_ 0 0 0 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2546081542969 2 488.750921 975.48729 0.1966 9.6088E-05 -0.047914 -2.3418E-05 0.14868 7.2669E-05 488.7508419325234 38.036 0.80658 35.594 35.039 35.845 -2.4419 57 22 4 0 0 0 0.51199 1 6736 6736 24.021 0.87215 1 16888000 34787 4021 23408 23423 34195 34195 -0.0014343055299832486 PSSEFLTKW 9 Unmodified _PSSEFLTKW_ 0 0 0 ENST00000419746.5_1_2:179403628-179404009:+|nuORF ENST00000419746.5_1_2:179403628-179404009:+|nuORF ENST00000419746.5_1_2:179403628-179404009:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.778076171875 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 38.938 1 36.496 35.996 36.996 -2.4419 0 0 0 0.19512 1 6944 6944 12.241 11.832 1 34788 9651 23409 23424 34196 34196 0.0013803672336507589 PSSFQGLRRFD 11 Unmodified _PSSFQGLRRFD_ 0 0 0 PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant;ENSG00000113448|ENST00000340635|PDE4D;ENST00000405053.7_1_5:58289290-59189104:-|nuORF;PDE4D|p.D198Vfs*28|1|0.07|ENSG00000113448|chr5:59215831-59215832|-/AAAACTAATGA|frameshift_variant PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2283935546875 3 437.226438 1308.65748 NaN NaN NaN NaN NaN NaN NaN 146.29 1 141.18 140.68 141.68 -5.1108 0 0 0 0.22632 1 28290 28290 0.58532 0 1 34789 2743 23410 23425 34197 34197 0.015501051692808687 PSSGAKSLQS 10 Unmodified _PSSGAKSLQS_ 0 0 0 RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant;RLF|p.Y1419Ifs*6|1|0.31|ENSG00000117000|chr1:40238952-40238952|T/-|frameshift_variant;RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant;RLF|p.N1741Ifs*21|1|0.18|ENSG00000117000|chr1:40239919-40239919|A/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2498474121094 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 76.926 1 76.926 76.426 77.426 0 0 0 0 2.8426 1 14951 14951 1.914 1.5057 1 34790 2968 23411 23426 34198 34198 0.0057998916687438395 PSSLSDYVL 9 Unmodified _PSSLSDYVL_ 0 0 0 REV__nc|ENSG00000184347|O75094-3|SLIT3 REV__nc|ENSG00000184347|O75094-3|SLIT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 492.7904968261719 2 490.75039 979.486227 0.24165 0.00011859 -0.12552 -6.1601E-05 0.11613 5.6989E-05 490.75033429451986 114.57 2.862 110.01 108.86 111.72 -4.555 265 81 5 0 0 0 0.35556 1 22081 22081 12.241 4.0851 1 299520000 + 34791 18892 23412 23427 34199 34199 -0.004336449219067617 PSSNNPHY 8 Unmodified _PSSNNPHY_ 0 0 0 REV__ENSG00000163464|ENST00000295683|CXCR1 REV__ENSG00000163464|ENST00000295683|CXCR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2381286621094 2 458.201399 914.388245 0.052437 2.4027E-05 0.26069 0.00011945 0.31313 0.00014348 458.2014624427824 26.614 0.44459 24.692 24.503 24.947 -1.9222 29 12 3 0 0 0 0.69031 1 4428 4428 15.847 6.4997 1 1115600 + 34792 17572 23413 23428 34200 34200 -0.07237408727235106 PSSNNPHY 8 Unmodified _PSSNNPHY_ 0 0 0 REV__ENSG00000163464|ENST00000295683|CXCR1 REV__ENSG00000163464|ENST00000295683|CXCR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2256164550781 2 458.201399 914.388245 0.052437 2.4027E-05 0.26069 0.00011945 0.31313 0.00014348 458.2014624427824 26.614 0.44459 24.692 24.503 24.947 -1.9222 29 12 3 0 0 0 0.96386 1 4442 4442 20.454 11.106 1 1115600 + 34793 17572 23413 23428 34201 34201 -0.07237408727235106 PSSQNLLAL 9 Unmodified _PSSQNLLAL_ 0 0 0 ENSG00000177169|ENST00000321867|ULK1;ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.31329345703125 3 314.846675 941.518196 -0.14025 -4.4156E-05 -0.90054 -0.00028353 -1.0408 -0.00032769 314.8467866591099 29.898 0.45427 27.824 27.692 28.146 -2.0743 16 12 2 0 0 0 0.8825 1 5071 5071 2.7352 0 1 252560 34794 6499 23414 23429 34202 34202 0.04509767551905952 PSSSEINAT 9 Unmodified _PSSSEINAT_ 0 0 0 DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant;DSCAML1|p.P2046Qfs*45|1|0.5|ENSG00000177103|chr11:117428533-117428533|G/-|frameshift_variant;ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1;DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7520446777344 2 453.214172 904.413791 0.24343 0.00011032 -0.14984 -6.7908E-05 0.09359 4.2416E-05 453.21409457442746 34.5 0.88681 34.5 34.108 34.995 0 56 25 3 0 0 0 0.10297 1 6355 6355 54.774 6.4277 1 2540100 34795 893 23415 23430 34203 34203 -0.04223978995469224 PSSSEINAT 9 Unmodified _PSSSEINAT_ 0 0 0 DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant;DSCAML1|p.P2046Qfs*45|1|0.5|ENSG00000177103|chr11:117428533-117428533|G/-|frameshift_variant;ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1;DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.214172 904.413791 0.21089 9.5577E-05 -0.20935 -9.4881E-05 0.0015347 6.9553E-07 453.2141252922327 36.817 0.85037 34.479 34.061 34.911 -2.3375 0.04373 -0.00015073 NaN 54.774 44 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1547400 34796 893 23415 23430 -0.04223978995469224 PSSVASDVSK 10 Unmodified _PSSVASDVSK_ 0 0 0 ENSG00000157778|ENST00000288607|PSMG3 ENSG00000157778|ENST00000288607|PSMG3 ENSG00000157778|ENST00000288607|PSMG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25531005859375 2 488.750921 975.48729 -0.22622 -0.00011056 0.1343 6.5641E-05 -0.091912 -4.4922E-05 488.7509215216275 38.024 0.69453 35.555 35.188 35.882 -2.4688 53 19 4 0 0 0 0.51199 1 7039 7039 24.021 0 1 14769000 34797 5139 23416 23431 34204 34204 -0.0014343055298695617 PSSVASDVSK 10 Unmodified _PSSVASDVSK_ 0 0 0 ENSG00000157778|ENST00000288607|PSMG3 ENSG00000157778|ENST00000288607|PSMG3 ENSG00000157778|ENST00000288607|PSMG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.255126953125 2 488.750921 975.48729 -0.047117 -2.3028E-05 0.14395 7.0354E-05 0.096831 4.7326E-05 488.7509597930902 37.997 0.93008 35.659 35.05 35.98 -2.3375 66 26 4 0 0 0 0.51199 1 6715 6715 24.021 0 1 18020000 34798 5139 23416 23431 34205 34205 -0.0014343055298695617 PSSVAVIEA 9 Unmodified _PSSVAVIEA_ 0 0 0 ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant;nc|ENSG00000134028|O15204-2|ADAMDEC1;ENSG00000134028|ENST00000256412|ADAMDEC1 ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.217041015625 2 436.739825 871.465098 -0.084972 -3.7111E-05 0.21747 9.4979E-05 0.1325 5.7868E-05 436.73985943712376 92.51 1.1214 88.702 88.174 89.296 -3.8083 70 32 3 0 0 0 0.09143 1 17771 17771 58.679 0 1 8453600 34799 59 23417 23432 34206 34206 0.024223897692422725 PSSVKSLPLLY 11 Unmodified _PSSVKSLPLLY_ 0 0 0 REV__ENST00000409320.7_1_2:101622422-101622563:+|nuORF REV__ENST00000409320.7_1_2:101622422-101622563:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2939453125 2 602.352814 1202.69108 NaN NaN NaN NaN NaN NaN NaN 33.284 1 30.966 30.466 31.466 -2.3175 0 0 0 0.23379 1 6083 6083 5.2969 1.3525 1 + 34800 21408 23418 23433 34207 34207 0.09783713888487 PSTGHPLL 8 Unmodified _PSTGHPLL_ 0 0 0 REV__ENST00000397887.7_1_21:46270379-46270601:-|nuORF REV__ENST00000397887.7_1_21:46270379-46270601:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1073303222656 2 411.229428 820.444303 -0.1396 -5.7408E-05 -0.39965 -0.00016435 -0.53925 -0.00022176 411.22925710129056 79.401 0.43002 75.891 75.727 76.157 -3.5102 15 11 2 0 0 0 1.0095 1 15530 15530 0.69038 0 1 1052000 + 34801 21316 23419 23434 34208 34208 0.026898441802472917 PSTGHPLL 8 Unmodified _PSTGHPLL_ 0 0 0 REV__ENST00000397887.7_1_21:46270379-46270601:-|nuORF REV__ENST00000397887.7_1_21:46270379-46270601:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 411.229428 820.444303 -0.51264 -0.00021081 -0.026296 -1.0814E-05 -0.53894 -0.00022163 411.22934367647713 79.563 0.45709 75.887 75.69 76.147 -3.676 -0.0017713 0.00020283 NaN 0.69038 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 610460 + 34802 21316 23419 23434 0.026898441802472917 PSTIRSVGC 9 Unmodified _PSTIRSVGC_ 0 0 0 nc|ENSG00000165478|Q14CZ8-2|HEPACAM nc|ENSG00000165478|Q14CZ8-2|HEPACAM nc|ENSG00000165478|Q14CZ8-2|HEPACAM MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2392578125 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 72.049 1 68.511 68.011 69.011 -3.5385 0 0 0 0.16428 1 13664 13664 28.487 1.6032 1 34803 12432 23420 23435 34209 34209 -0.003190320140674885 PSTPAHLVP 9 Unmodified _PSTPAHLVP_ 0 0 0 ENST00000482456.6_1_10:102259886-102268850:-|nuORF;nc|ENSG00000075826|Q9NQW1-4|SEC31B;nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B ENST00000482456.6_1_10:102259886-102268850:-|nuORF ENST00000482456.6_1_10:102259886-102268850:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.233642578125 2 459.75581 917.497067 0.13394 6.158E-05 -0.066514 -3.058E-05 0.067426 3.1E-05 459.75585553312396 98.232 0.8676 93.963 93.358 94.226 -4.2692 44 24 2 0 0 0 0.46541 1 18681 18681 21.747 21.747 1 1982100 34804 1528 23421 23436 34210 34210 0.035018022430335805 PSTSSLLTN 9 Unmodified _PSTSSLLTN_ 0 0 0 ENSG00000136738|ENST00000377524|STAM;nc|ENSG00000136738|Q92783-2|STAM ENSG00000136738|ENST00000377524|STAM ENSG00000136738|ENST00000377524|STAM MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23956298828125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 133.6 1 133.6 133.1 134.1 0 0 0 0 0.19674 1 26431 26431 0.37959 0 1 34805 4035 23422 23437 34211 34211 0.0033318441827532297 PSTVLTTSV 9 Unmodified _PSTVLTTSV_ 0 0 0 REV__MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant REV__MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.20751953125 3 302.171047 903.491313 NaN NaN NaN NaN NaN NaN NaN 55.563 1 55.563 55.063 56.063 0 0 0 0 0.23508 1 10611 10611 2.4985 0.84587 1 + 34806 18124 23423 23438 34212 34212 0.03570658940714111 PSVGLIANSKY 11 Unmodified _PSVGLIANSKY_ 0 0 0 SLC16A7|p.F319Lfs*37|1|0.01|ENSG00000118596|chr12:59775249-59775250|-/C|frameshift_variant;SLC16A7|p.S318Nfs*85|1|0.04|ENSG00000118596|chr12:59775247-59775248|-/ATTCCTTG|frameshift_variant;ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7 SLC16A7|p.F319Lfs*37|1|0.01|ENSG00000118596|chr12:59775249-59775250|-/C|frameshift_variant SLC16A7|p.F319Lfs*37|1|0.01|ENSG00000118596|chr12:59775249-59775250|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.2067565917969 3 383.548518 1147.62372 -0.45592 -0.00017487 0.4106 0.00015748 -0.045326 -1.7385E-05 383.5485952343307 76.052 0.61565 72.418 72.1 72.715 -3.6337 29 17 2 0 0 0 0.93364 1 14425 14425 14.218 5.2419 1 2399800 34807 3045 23424 23439 34213 34213 0.055816836775193224 PSVGLIANSKY 11 Unmodified _PSVGLIANSKY_ 0 0 0 SLC16A7|p.F319Lfs*37|1|0.01|ENSG00000118596|chr12:59775249-59775250|-/C|frameshift_variant;SLC16A7|p.S318Nfs*85|1|0.04|ENSG00000118596|chr12:59775247-59775248|-/ATTCCTTG|frameshift_variant;ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7 SLC16A7|p.F319Lfs*37|1|0.01|ENSG00000118596|chr12:59775249-59775250|-/C|frameshift_variant SLC16A7|p.F319Lfs*37|1|0.01|ENSG00000118596|chr12:59775249-59775250|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 383.548518 1147.62372 -0.17266 -6.6223E-05 0.23477 9.0047E-05 0.062115 2.3824E-05 383.5485558483964 72.35 0.55714 72.35 72.056 72.613 0 -0.057923 0.00011657 NaN 14.218 24 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2669200 34808 3045 23424 23439 0.055816836775193224 PSVGLIANSKY 11 Unmodified _PSVGLIANSKY_ 0 0 0 SLC16A7|p.F319Lfs*37|1|0.01|ENSG00000118596|chr12:59775249-59775250|-/C|frameshift_variant;SLC16A7|p.S318Nfs*85|1|0.04|ENSG00000118596|chr12:59775247-59775248|-/ATTCCTTG|frameshift_variant;ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7 SLC16A7|p.F319Lfs*37|1|0.01|ENSG00000118596|chr12:59775249-59775250|-/C|frameshift_variant SLC16A7|p.F319Lfs*37|1|0.01|ENSG00000118596|chr12:59775249-59775250|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 383.548518 1147.62372 -0.26619 -0.0001021 0.18154 6.9629E-05 -0.08465 -3.2467E-05 383.5486115372478 75.787 0.59502 72.372 72.12 72.715 -3.4151 -0.035414 5.5315E-05 NaN 14.218 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2226500 34809 3045 23424 23439 0.055816836775193224 PSVGLIANSKY 11 Unmodified _PSVGLIANSKY_ 0 0 0 SLC16A7|p.F319Lfs*37|1|0.01|ENSG00000118596|chr12:59775249-59775250|-/C|frameshift_variant;SLC16A7|p.S318Nfs*85|1|0.04|ENSG00000118596|chr12:59775247-59775248|-/ATTCCTTG|frameshift_variant;ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7 SLC16A7|p.F319Lfs*37|1|0.01|ENSG00000118596|chr12:59775249-59775250|-/C|frameshift_variant SLC16A7|p.F319Lfs*37|1|0.01|ENSG00000118596|chr12:59775249-59775250|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 383.548518 1147.62372 0.095447 3.6609E-05 -0.16011 -6.1411E-05 -0.064665 -2.4802E-05 383.5483995794422 76.213 0.55192 72.49 72.135 72.686 -3.7227 0.082683 -0.00033781 NaN 14.218 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1713800 34810 3045 23424 23439 0.055816836775193224 PSVPHNTNP 9 Unmodified _PSVPHNTNP_ 0 0 0 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7771301269531 2 481.738148 961.461744 0.3896 0.00018768 0.47289 0.00022781 0.86249 0.00041549 481.7383824866358 29.446 0.31236 27.371 27.17 27.483 -2.0743 14 8 2 0 0 0 0.60061 1 5019 5019 13.042 0 1 306560 34811 6650 23425 23440 34214 34214 -0.020528602847548427 PSVPPKAPVQK 11 Unmodified _PSVPPKAPVQK_ 0 0 0 ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant;ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant;ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292 ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.2070007324219 3 383.232641 1146.67609 -0.50471 -0.00019342 0.78789 0.00030194 0.28318 0.00010852 383.2327901195594 76.609 1.0502 72.975 72.409 73.459 -3.6337 57 29 4 0 0 0 0.88591 1 14523 14523 0.03141 0.0176 1 10765000 34812 7211 23426 23441 34215 34215 0.10862266811136578 PSVPPKAPVQK 11 Unmodified _PSVPPKAPVQK_ 0 0 0 ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant;ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant;ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292 ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 383.232641 1146.67609 -0.12013 -4.6039E-05 0.043789 1.6781E-05 -0.076345 -2.9258E-05 383.2326232475609 73.127 0.94337 73.127 72.648 73.591 0 0.086711 -0.00026377 NaN 0.03141 69 26 3 NaN NaN NaN NaN 0 NaN NaN 0 4936300 34813 7211 23426 23441 0.10862266811136578 PSVPPKAPVQK 11 Unmodified _PSVPPKAPVQK_ 0 0 0 ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant;ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant;ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292 ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 383.232641 1146.67609 -0.25262 -9.6811E-05 0.45539 0.00017452 0.20278 7.7711E-05 383.2326846205385 76.494 0.53134 73.078 72.752 73.284 -3.4151 0.037907 0.00020945 NaN 0.03141 48 14 4 NaN NaN NaN NaN 0 NaN NaN 0 9131800 34814 7211 23426 23441 0.10862266811136578 PSVPPKAPVQK 11 Unmodified _PSVPPKAPVQK_ 0 0 0 ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant;ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant;ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292 ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 383.232641 1146.67609 0.067721 2.5953E-05 -0.038183 -1.4633E-05 0.029538 1.132E-05 383.2325841274558 76.747 0.54904 72.981 72.678 73.227 -3.7664 -0.059577 -0.00035802 NaN 0.03141 41 15 4 NaN NaN NaN NaN 0 NaN NaN 0 9245900 34815 7211 23426 23441 0.10862266811136578 PSVPTPEE 8 Unmodified _PSVPTPEE_ 0 0 0 ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 857.4065551757812 1 855.40944 854.402163 0.29239 0.00025011 -2.6498 -0.0022667 -2.3574 -0.0020166 855.4091100626931 54.388 1.2606 51.253 50.559 51.82 -3.1352 71 35 3 0 0 0 0.64227 1 10094 10094 19.439 3.5918 1 42155000 34816 81 23427 23442 34216 34216 -0.03086176018803144 PSVSGSTD 8 Unmodified _PSVSGSTD_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2166748046875 2 375.169233 748.323913 NaN NaN NaN NaN NaN NaN NaN 113.19 1 108.92 108.42 109.42 -4.2725 0 0 0 0.23782 1 21798 21798 0.063987 0 1 + 34817 16048 23428 23443 34217 34217 -0.06031608604041594 PSVTPRTFDSP 11 Unmodified _PSVTPRTFDSP_ 0 0 0 ENST00000547785.2_1_14:20146241-20147198:+|nuORF ENST00000547785.2_1_14:20146241-20147198:+|nuORF ENST00000547785.2_1_14:20146241-20147198:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2886352539062 2 602.303852 1202.59315 NaN NaN NaN NaN NaN NaN NaN 103.2 1 99.016 98.516 99.516 -4.1861 0 0 0 0.18831 1 20286 20286 21.537 6.6987 1 34818 11147 23429 23444 34218 34218 -4.0947075376607245E-05 PSWEKIVAGR 10 Unmodified _PSWEKIVAGR_ 0 0 0 nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ADCY10|p.N1597Tfs*4|1|0.07|ENSG00000143199|chr1:167809721-167809721|T/-|frameshift_variant;ENSG00000143199|ENST00000367851|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2190856933594 3 381.548741 1141.62439 0.35345 0.00013486 2.9327 0.001119 3.2861 0.0012538 381.54970758799914 22.065 0.31435 20.591 20.448 20.763 -1.4742 14 8 2 0 0 0 0.80382 1 3764 3764 22.775 15.738 1 685940 34819 70 23430 23445 34219 34219 0.059245231172326385 PSWEKIVAGR 10 Unmodified _PSWEKIVAGR_ 0 0 0 nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ADCY10|p.N1597Tfs*4|1|0.07|ENSG00000143199|chr1:167809721-167809721|T/-|frameshift_variant;ENSG00000143199|ENST00000367851|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 381.548741 1141.62439 -0.15023 -5.7318E-05 1.5582 0.00059454 1.408 0.00053722 381.5491818968231 20.454 0.31883 20.454 20.313 20.632 0 -0.082155 -0.0016157 NaN 22.775 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 367440 34820 70 23430 23445 0.059245231172326385 PSWEKIVAGR 10 Unmodified _PSWEKIVAGR_ 0 0 0 nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ADCY10|p.N1597Tfs*4|1|0.07|ENSG00000143199|chr1:167809721-167809721|T/-|frameshift_variant;ENSG00000143199|ENST00000367851|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 381.548741 1141.62439 -0.14853 -5.6673E-05 2.7944 0.0010662 2.6459 0.0010095 381.54983920123345 21.98 0.31206 20.564 20.386 20.698 -1.4165 0.027972 -0.00020067 NaN 22.775 16 8 3 NaN NaN NaN NaN 0 NaN NaN 0 857530 34821 70 23430 23445 0.059245231172326385 PSWEKIVAGR 10 Unmodified _PSWEKIVAGR_ 0 0 0 nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ADCY10|p.N1597Tfs*4|1|0.07|ENSG00000143199|chr1:167809721-167809721|T/-|frameshift_variant;ENSG00000143199|ENST00000367851|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 381.548741 1141.62439 -1.2569 -0.00047958 4.2285 0.0016134 2.9716 0.0011338 381.5498215690359 22.324 0.32077 20.535 20.358 20.679 -1.7886 -0.00052708 0.0014408 NaN 22.775 16 8 3 NaN NaN NaN NaN 0 NaN NaN 0 488230 34822 70 23430 23445 0.059245231172326385 PSWGEHCV 8 Unmodified _PSWGEHCV_ 0 0 0 REV__ENST00000538770.1_1_11:113567578-113576977:-|nuORF REV__ENST00000538770.1_1_11:113567578-113576977:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2381286621094 2 457.694895 913.375237 -0.10245 -4.6889E-05 0.24326 0.00011134 0.14082 6.4451E-05 457.6960996303816 41.561 1.1903 38.91 38.237 39.427 -2.651 76 33 3 0 0 0 0.93477 1 7467 7467 12.532 3.9383 1 2118300 + 34823 17864 23431 23446 34220 34220 -0.08491563110987954 PSWHFPFE 8 Unmodified _PSWHFPFE_ 0 0 0 ENST00000328405.6_1_3:19189957-19190221:+|nuORF ENST00000328405.6_1_3:19189957-19190221:+|nuORF ENST00000328405.6_1_3:19189957-19190221:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6865234375 2 523.74016 1045.46577 NaN NaN NaN NaN NaN NaN NaN 119.05 1 114.41 113.91 114.91 -4.6403 0 0 0 0.21486 1 22842 22842 8.5933 0 1 34824 8753 23432 23447 34221 34221 -0.055147707910464305 PSWMRWLARMT 11 Unmodified _PSWMRWLARMT_ 0 0 0 REV__ENST00000358550.6_1_14:72139134-72139200:+|nuORF REV__ENST00000358550.6_1_14:72139134-72139200:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7322692871094 3 478.909287 1433.70603 NaN NaN NaN NaN NaN NaN NaN 121.81 1 117.13 116.63 117.63 -4.6873 0 0 0 0.22632 1 23385 23385 0.172 0 1 + 34825 20838 23433 23448 34222 34222 0.00652559213153836 PSYFYHNGEF 10 Unmodified _PSYFYHNGEF_ 0 0 0 REV__ENSG00000163902|ENST00000296255|RPN1 REV__ENSG00000163902|ENST00000296255|RPN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7681274414062 2 630.769645 1259.52474 NaN NaN NaN NaN NaN NaN NaN 50.371 1 47.49 46.99 47.99 -2.8811 0 0 0 2.8426 1 9558 9558 0.69767 0.65388 1 + 34826 17627 23434 23449 34223 34223 -0.09464339287387702 PSYHHSPYKQ 10 Unmodified _PSYHHSPYKQ_ 0 0 0 PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7559204101562 2 622.296362 1242.57817 NaN NaN NaN NaN NaN NaN NaN 124.43 1 119.66 119.16 120.16 -4.7681 0 0 0 0.22588 1 23896 23896 9.3831 1.2276 1 34827 12771 23435 23450 34224 34224 -0.03341541784857327 PSYTASSVS 9 Unmodified _PSYTASSVS_ 0 0 0 REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1 REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.28289794921875 2 449.711265 897.407977 -0.29659 -0.00013338 0.057372 2.5801E-05 -0.23922 -0.00010758 449.71128367241914 52.293 1.162 49.411 48.732 49.894 -2.8824 51 33 2 0 0 0 0.79204 1 9996 9996 16.942 5.302 1 1113700 + 34828 25082 23436 23451 34225 34225 -0.044830775071318385 PSYTASSVS 9 Unmodified _PSYTASSVS_ 0 0 0 REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1 REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 449.711265 897.407977 0.47826 0.00021508 -0.7043 -0.00031673 -0.22603 -0.00010165 449.7109847756276 49.331 0.80671 49.331 48.88 49.686 0 -0.044184 -0.00047327 NaN 16.942 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 662620 + 34829 25082 23436 23451 -0.044830775071318385 PSYTASSVS 9 Unmodified _PSYTASSVS_ 0 0 0 REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1 REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.711265 897.407977 0.00065766 2.9576E-07 -0.016601 -7.4656E-06 -0.015943 -7.1698E-06 449.71120588397736 52.471 1.2265 49.383 48.705 49.932 -3.0876 0.0083086 0.00014526 NaN 16.942 55 34 2 NaN NaN NaN NaN 0 NaN NaN 0 1104600 + 34830 25082 23436 23451 -0.044830775071318385 PTALPSLDL 9 Unmodified _PTALPSLDL_ 0 0 0 REV__nc|ENSG00000115966|P15336-3|ATF2 REV__nc|ENSG00000115966|P15336-3|ATF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24298095703125 2 463.7633 925.512048 0.13236 6.1383E-05 -0.15521 -7.1979E-05 -0.022849 -1.0596E-05 463.7631497774517 122.91 1.0289 118.34 117.75 118.78 -4.5757 69 28 3 0 0 0 0.56709 1 24157 24157 0.40827 0 1 9695900 + 34831 15458 23437 23452 34226 34226 0.04631249320379993 PTALPSLDL 9 Unmodified _PTALPSLDL_ 0 0 0 REV__nc|ENSG00000115966|P15336-3|ATF2 REV__nc|ENSG00000115966|P15336-3|ATF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 463.7633 925.512048 0.14789 6.8587E-05 -0.16311 -7.5644E-05 -0.015216 -7.0567E-06 463.7631430080168 118.37 0.92517 118.37 117.93 118.85 0 0.00070573 7.5768E-05 NaN 0.40827 62 25 3 NaN NaN NaN NaN 0 NaN NaN 0 9980600 + 34832 15458 23437 23452 0.04631249320379993 PTALPSLDL 9 Unmodified _PTALPSLDL_ 0 0 0 REV__nc|ENSG00000115966|P15336-3|ATF2 REV__nc|ENSG00000115966|P15336-3|ATF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 463.7633 925.512048 0.43119 0.00019997 -0.3928 -0.00018216 0.038392 1.7805E-05 463.76300545654516 123.14 1.0254 118.41 117.98 119 -4.731 0.041243 -0.00013727 NaN 0.40827 72 28 4 NaN NaN NaN NaN 0 NaN NaN 0 8285000 + 34833 15458 23437 23452 0.04631249320379993 PTALPSLDL 9 Unmodified _PTALPSLDL_ 0 0 0 REV__nc|ENSG00000115966|P15336-3|ATF2 REV__nc|ENSG00000115966|P15336-3|ATF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 463.7633 925.512048 0.29037 0.00013466 -0.27887 -0.00012933 0.011497 5.3319E-06 463.76310549409857 122.95 1.0863 118.36 117.84 118.93 -4.5926 -0.012938 -3.1604E-05 NaN 0.40827 73 30 3 NaN NaN NaN NaN 0 NaN NaN 0 7833300 + 34834 15458 23437 23452 0.04631249320379993 PTAMAERPG 9 Unmodified _PTAMAERPG_ 0 0 0 REV__ENST00000259254.8_1_2:127453866-127454094:+|nuORF REV__ENST00000259254.8_1_2:127453866-127454094:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25750732421875 2 465.229102 928.443651 0.24295 0.00011303 -2.8216 -0.0013127 -2.5787 -0.0011997 465.22879100484835 51.595 0.31187 51.595 51.372 51.684 0 12 8 2 0 0 0 0.77732 1 9805 9805 18.135 1.1927 1 2041400 + 34835 20151 23438 23453 34227 34227 -0.023433185311205307 PTAPPPPRS 9 Unmodified _PTAPPPPRS_ 0 0 0 REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;REV__KMT2D|p.V3089Wfs*30|1|0.12|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant;REV__KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2315368652344 2 460.253434 918.492316 0.41392 0.00019051 -2.188 -0.001007 -1.774 -0.00081651 460.25393932368803 50.13 0.91651 50.13 49.825 50.741 0 27 26 2 0 0 0 0.71527 1 9437 9437 25.399 16.806 1 585230 + 34836 17938;23733;23731 23439 23454 34228 34228 0.029809181002860896 PTAPVAYFPY 10 Unmodified _PTAPVAYFPY_ 0 0 0 ENSG00000197417|ENST00000225519|SHPK ENSG00000197417|ENST00000225519|SHPK ENSG00000197417|ENST00000225519|SHPK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1182556152344 3 375.858692 1124.55425 0.33905 0.00012743 -0.1584 -5.9536E-05 0.18065 6.7898E-05 375.8585248043611 29.376 0.31992 27.483 27.263 27.583 -1.8928 10 8 2 0 0 0 0.91149 1 4985 4985 1.9064 0.83491 1 377240 34837 7365 23440 23455 34229 34229 -0.003047752712518559 PTATRCAGP 9 Unmodified _PTATRCAGP_ 0 0 0 REV__nc|ENSG00000168476|Q9H6H4-2|REEP4 REV__nc|ENSG00000168476|Q9H6H4-2|REEP4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2171630859375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 107.35 1 103.22 102.72 103.72 -4.135 0 0 0 0.23508 1 20646 20646 12.532 1.4171 1 + 34838 24155 23441 23456 34230 34230 -0.023875877026057424 PTCISLWV 8 Unmodified _PTCISLWV_ 0 0 0 ENST00000382361.7_1_7:5645882-5646230:+|nuORF ENST00000382361.7_1_7:5645882-5646230:+|nuORF ENST00000382361.7_1_7:5645882-5646230:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2431335449219 2 459.741314 917.468075 0.075021 3.449E-05 0.49169 0.00022605 0.56671 0.00026054 459.7416858373936 86.195 0.73846 82.466 82.171 82.909 -3.7289 35 20 2 0 0 0 8448 1 16490 16490 14.838 14.838 1 1267900 34839 9342 23442 23457 34231 34231 0.006039416223984517 PTCPRPPPP 9 Unmodified _PTCPRPPPP_ 0 0 0 REV__ENSG00000107554|ENST00000324109|DNMBP REV__ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7876892089844 2 481.249837 960.485122 -0.20207 -9.7244E-05 1.5963 0.00076822 1.3942 0.00067098 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 0.48644 1 7710 7710 20.454 4.6064 1 85144000 + 34840 13732 23443 23458 34232 34232 0.0032986222820454714 PTCRGALTP 9 Unmodified _PTCRGALTP_ 0 0 0 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2379150390625 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 175.72 1 170.85 170.35 171.35 -4.8739 0 0 0 0.23508 1 34945 34945 10.074 1.4806 1 34841 6742 23444 23459 34233 34233 0.003732718485366604 PTCRPVLLG 9 Unmodified _PTCRPVLLG_ 0 0 0 REV__nc|ENSG00000235718|Q9BY79-2|MFRP REV__nc|ENSG00000235718|Q9BY79-2|MFRP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.2743835449219 2 478.273312 954.532072 NaN NaN NaN NaN NaN NaN NaN 69.432 1 65.896 65.396 66.396 -3.5362 0 0 0 0.19674 1 13072 13072 0.40827 0 1 + 34842 19765 23445 23460 34234 34234 0.052987217793543095 PTDEAPTPI 9 Unmodified _PTDEAPTPI_ 0 0 0 REV__ENST00000585583.5_1_19:39088111-39100659:-|nuORF REV__ENST00000585583.5_1_19:39088111-39100659:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1471862792969 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 68.224 1 68.224 67.724 68.724 0 0 0 0 0.23508 1 13189 13189 12.241 6.9438 1 + 34843 14943 23446 23461 34235 34235 -0.017222179560008044 PTDEAPTPI 9 Unmodified _PTDEAPTPI_ 0 0 0 REV__ENST00000585583.5_1_19:39088111-39100659:-|nuORF REV__ENST00000585583.5_1_19:39088111-39100659:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.15869140625 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 71.822 1 68.195 67.695 68.695 -3.6275 0 0 0 0.23508 1 13553 13553 8.1555 2.8586 1 + 34844 14943 23446 23461 34236 34236 -0.017222179560008044 PTDENLLKY 9 Unmodified _PTDENLLKY_ 0 0 0 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.767578125 2 546.782222 1091.54989 0.16001 8.7489E-05 -0.12591 -6.8844E-05 0.0341 1.8645E-05 546.7819618679563 91.729 0.58191 87.804 87.441 88.023 -3.9251 31 16 3 0 0 0 0.13904 2 17954 17954;17963 45.74 28.627 1 3983200 34845 4092 23447 23462 34237;34238 34237 0.007777155151870829 PTDENLLKY 9 Unmodified _PTDENLLKY_ 0 0 0 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.782222 1091.54989 0.24011 0.00013129 0.45378 0.00024812 0.69388 0.0003794 546.7824698045329 87.771 0.48297 87.771 87.537 88.02 0 0.026429 0.00023946 NaN 45.74 25 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3042000 34846 4092 23447 23462 0.007777155151870829 PTDENLLKY 9 Unmodified _PTDENLLKY_ 0 0 0 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.782222 1091.54989 0.31891 0.00017438 0.14105 7.7125E-05 0.45997 0.0002515 546.7823063405255 91.803 0.5536 87.708 87.427 87.981 -4.0946 -0.036189 -0.00010252 NaN 45.74 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2629500 34847 4092 23447 23462 0.007777155151870829 PTDENLLKY 9 Unmodified _PTDENLLKY_ 0 0 0 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.782222 1091.54989 0.20209 0.0001105 0.33462 0.00018296 0.53671 0.00029347 546.7823777070754 91.503 0.55426 87.695 87.444 87.999 -3.8083 -0.049717 0.00010916 NaN 45.74 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2855600 34848 4092 23447 23462 0.007777155151870829 PTDGPPNSFY 10 Unmodified _PTDGPPNSFY_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7896118164062 2 547.743096 1093.47164 0.3613 0.0001979 0.053332 2.9212E-05 0.41463 0.00022711 547.742984849967 85.111 1.8329 85.111 84.277 86.11 0 125 51 3 0 0 0 0.069132 4 16631 16458;16631;16709;16767 78.06 26.92 1 6823200 34849 1474 23448 23463 34239;34240;34241;34242 34240 -0.07135717070036662 PTDGPPNSFY 10 Unmodified _PTDGPPNSFY_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7808227539062 2 547.743096 1093.47164 0.11045 6.0499E-05 0.23767 0.00013018 0.34812 0.00019068 547.7430958625433 89.586 2.2621 85.727 84.667 86.929 -3.8595 164 63 3 0 0 0 0.056461 3 17619 17400;17619;17693 81.915 32.688 1 11470000 34850 1474 23448 23463 34243;34244;34245 34244 -0.07135717070036662 PTDGPPNSFY 10 Unmodified _PTDGPPNSFY_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7722778320312 2 547.743096 1093.47164 0.40463 0.00022164 -0.096674 -5.2952E-05 0.30796 0.00016868 547.7429573219727 89.83 2.0736 85.786 84.754 86.828 -4.0443 169 58 4 0 0 0 0.01714 3 17119 17119;17219;17296 96.936 33.211 1 9875500 34851 1474 23448 23463 34246;34247;34248 34246 -0.07135717070036662 PTDGPPNSFY 10 Unmodified _PTDGPPNSFY_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.743096 1093.47164 0.10335 5.6608E-05 1.7635 0.00096597 1.8669 0.0010226 547.7428909254667 88.509 0.14338 84.717 84.661 84.804 -3.7926 -0.197 0.0018498 NaN 78.06 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 654960 34852 1474 23448 23463 -0.07135717070036662 PTDITSLDQY 10 Unmodified _PTDITSLDQY_ 0 0 0 ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF ENST00000548462.5_1_12:104324233-104336580:+|nuORF ENST00000548462.5_1_12:104324233-104336580:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3150634765625 2 576.774593 1151.53463 -0.47002 -0.00027109 0.85621 0.00049384 0.3862 0.00022275 576.7748295273472 108.13 0.68835 103.81 103.45 104.14 -4.32 36 19 3 0 0 0 0.056168 1 21288 21288 72.968 53.606 1 2617100 34853 5738 23449 23464 34249 34249 -0.03507196072655461 PTDITSLDQY 10 Unmodified _PTDITSLDQY_ 0 0 0 ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF ENST00000548462.5_1_12:104324233-104336580:+|nuORF ENST00000548462.5_1_12:104324233-104336580:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33837890625 2 576.774593 1151.53463 0.01576 9.0899E-06 0.23875 0.0001377 0.25451 0.00014679 576.7746432442651 108.32 0.57915 103.91 103.54 104.12 -4.4121 26 16 2 0 0 0 0.22493 1 20774 20774 53.833 23.196 1 2235600 34854 5738 23449 23464 34250 34250 -0.03507196072655461 PTDITSLDQY 10 Unmodified _PTDITSLDQY_ 0 0 0 ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF ENST00000548462.5_1_12:104324233-104336580:+|nuORF ENST00000548462.5_1_12:104324233-104336580:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3382568359375 2 576.774593 1151.53463 0.6964 0.00040166 -0.77407 -0.00044647 -0.077676 -4.4802E-05 576.7740530841393 107.98 0.76958 103.85 103.46 104.23 -4.135 32 21 2 0 0 0 0.52179 1 20808 20808 39.95 32.341 1 2503600 34855 5738 23449 23464 34251 34251 -0.03507196072655461 PTDLETRSY 9 Unmodified _PTDLETRSY_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-3|NF1;NF1|p.Y628Lfs*6|1|0.17|ENSG00000196712|chr17:31225125-31225126|-/T|frameshift_variant;NF1|p.P678Rfs*10|1|0.35|ENSG00000196712|chr17:31226460-31226460|C/-|frameshift_variant;NF1|p.I679Dfs*21|1|0.37|ENSG00000196712|chr17:31226459-31226460|-/C|frameshift_variant;NF1|p.D946*|1|0.2|ENSG00000196712|chr17:31229444-31229445|-/T|frameshift_variant;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2614135742188 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 39.654 1 39.654 39.154 40.154 0 0 0 0 0.038964 1 7364 7364 57.722 19.748 1 34856 7305;12537;12538 23450 23465 34252 34252 -0.028280455243020697 PTDLETRSY 9 Unmodified _PTDLETRSY_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-3|NF1;NF1|p.Y628Lfs*6|1|0.17|ENSG00000196712|chr17:31225125-31225126|-/T|frameshift_variant;NF1|p.P678Rfs*10|1|0.35|ENSG00000196712|chr17:31226460-31226460|C/-|frameshift_variant;NF1|p.I679Dfs*21|1|0.37|ENSG00000196712|chr17:31226459-31226460|-/C|frameshift_variant;NF1|p.D946*|1|0.2|ENSG00000196712|chr17:31229444-31229445|-/T|frameshift_variant;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2847900390625 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 42.336 1 39.617 39.117 40.117 -2.7191 0 0 0 0.22193 1 7917 7917 17.113 1.2657 1 34857 7305;12537;12538 23450 23465 34253 34253 -0.028280455243020697 PTDLETRSY 9 Unmodified _PTDLETRSY_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-3|NF1;NF1|p.Y628Lfs*6|1|0.17|ENSG00000196712|chr17:31225125-31225126|-/T|frameshift_variant;NF1|p.P678Rfs*10|1|0.35|ENSG00000196712|chr17:31226460-31226460|C/-|frameshift_variant;NF1|p.I679Dfs*21|1|0.37|ENSG00000196712|chr17:31226459-31226460|-/C|frameshift_variant;NF1|p.D946*|1|0.2|ENSG00000196712|chr17:31229444-31229445|-/T|frameshift_variant;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2607421875 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 42.528 1 39.809 39.309 40.309 -2.7191 0 0 0 0.060013 1 7957 7957 47.594 13.193 1 34858 7305;12537;12538 23450 23465 34254 34254 -0.028280455243020697 PTDLETRSY 9 Unmodified _PTDLETRSY_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-3|NF1;NF1|p.Y628Lfs*6|1|0.17|ENSG00000196712|chr17:31225125-31225126|-/T|frameshift_variant;NF1|p.P678Rfs*10|1|0.35|ENSG00000196712|chr17:31226460-31226460|C/-|frameshift_variant;NF1|p.I679Dfs*21|1|0.37|ENSG00000196712|chr17:31226459-31226460|-/C|frameshift_variant;NF1|p.D946*|1|0.2|ENSG00000196712|chr17:31229444-31229445|-/T|frameshift_variant;NF1|p.K1386Rfs*20|1|0.33|ENSG00000196712|chr17:31252978-31252978|A/-|frameshift_variant;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.26123046875 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 42.514 1 39.863 39.363 40.363 -2.651 0 0 0 0.070848 1 7656 7656 43.772 7.6454 1 34859 7305;12537;12538 23450 23465 34255 34255 -0.028280455243020697 PTDQRAPR 8 Unmodified _PTDQRAPR_ 0 0 0 REV__ENSG00000186862|ENST00000619208|PDZD7 REV__ENSG00000186862|ENST00000619208|PDZD7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.2406005859375 3 314.170152 939.488627 NaN NaN NaN NaN NaN NaN NaN 14.066 1 12.952 12.452 13.452 -1.1142 0 0 0 0.21486 1 2083 2083 1.4819 0.28856 1 + 34860 19060 23451 23466 34256 34256 0.016462483264263028 PTEASIEEKKE 11 Unmodified _PTEASIEEKKE_ 0 0 0 REV__TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant REV__TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7775268554688 2 630.819532 1259.62451 NaN NaN NaN NaN NaN NaN NaN 166.09 1 161.14 160.64 161.64 -4.9484 0 0 0 0.2321 1 32509 32509 6.6304 0.42459 1 + 34861 18676 23452 23467 34257 34257 0.0050843353592426865 PTEDTNTEPAE 11 Unmodified _PTEDTNTEPAE_ 0 0 0 REV__nc|ENSG00000214558|P0DQW0|ZC3H11C REV__nc|ENSG00000214558|P0DQW0|ZC3H11C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.279052734375 2 602.254222 1202.49389 NaN NaN NaN NaN NaN NaN NaN 140.37 1 135.38 134.88 135.88 -4.9877 0 0 0 0.22632 1 27017 27017 0.172 0.17062 1 + 34862 19694 23453 23468 34258 34258 -0.09925582182950166 PTEENENDE 9 Unmodified _PTEENENDE_ 0 0 0 REV__ENSG00000102055|ENST00000378131|PPP1R2C REV__ENSG00000102055|ENST00000378131|PPP1R2C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 538.7056884765625 2 538.704365 1075.39418 NaN NaN NaN NaN NaN NaN NaN 170.91 1 166.12 165.62 166.62 -4.7898 0 0 0 0.19656 1 34716 34716 0.0033805 0 1 + 34863 14818 23454 23469 34259 34259 -0.1405039979688354 PTEIALAQH 9 Unmodified _PTEIALAQH_ 0 0 0 nc|ENSG00000170835|P19835-2|CEL;ENSG00000170835|ENST00000372080|CEL nc|ENSG00000170835|P19835-2|CEL nc|ENSG00000170835|P19835-2|CEL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2662353515625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 53.997 1 53.997 53.497 54.497 0 0 0 0 0.19674 1 10292 10292 1.2148 0.69841 1 34864 6099 23455 23470 34260 34260 0.02332883409144415 PTEIALAQH 9 Unmodified _PTEIALAQH_ 0 0 0 nc|ENSG00000170835|P19835-2|CEL;ENSG00000170835|ENST00000372080|CEL nc|ENSG00000170835|P19835-2|CEL nc|ENSG00000170835|P19835-2|CEL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2644348144531 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 54.228 1 54.228 53.728 54.728 0 0 0 0 0.19674 1 10339 10339 1.2148 0.588 1 34865 6099 23455 23470 34261 34261 0.02332883409144415 PTENLEGHSP 10 Unmodified _PTENLEGHSP_ 0 0 0 ENST00000431210.2_1_11:74555176-74574187:-|nuORF;ENST00000531849.5_1_11:74554845-74617298:-|nuORF;nc|ENSG00000166435|Q6P2D8-5|XRRA1;nc|ENSG00000166435|Q6P2D8-2|XRRA1;nc|ENSG00000166435|Q6P2D8-4|XRRA1;XRRA1|p.T704Rfs*62|1|0.09|ENSG00000166435|chr11:74843867-74843868|TG/-|frameshift_variant;nc|ENSG00000166435|Q6P2D8-3|XRRA1;nc|ENSG00000166435|Q6P2D8|XRRA1;ENSG00000166435|ENST00000684022|XRRA1 ENST00000431210.2_1_11:74555176-74574187:-|nuORF ENST00000431210.2_1_11:74555176-74574187:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2798461914062 2 540.751453 1079.48835 -0.12327 -6.666E-05 0.34198 0.00018492 0.2187 0.00011826 540.7516519679272 24.85 0.47988 22.997 22.812 23.292 -1.8534 23 13 2 0 0 0 0.61743 1 4057 4057 29.841 5.82 1 3228500 34866 5721 23456 23471 34262 34262 -0.04821216184086552 PTFESTHK 8 Unmodified _PTFESTHK_ 0 0 0 ENST00000378460.6_1_11:47834908-47837118:-|nuORF ENST00000378460.6_1_11:47834908-47837118:-|nuORF ENST00000378460.6_1_11:47834908-47837118:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.15997314453125 3 316.159142 945.455596 NaN NaN NaN NaN NaN NaN NaN 57.467 1 54.216 53.716 54.716 -3.2517 0 0 0 0.21486 1 10671 10671 1.4819 0.28856 1 34867 9281 23457 23472 34263 34263 -0.019313785162808017 PTFLLLPK 8 Unmodified _PTFLLLPK_ 0 0 0 ENST00000535977.5_1_16:677627-678308:+|nuORF ENST00000535977.5_1_16:677627-678308:+|nuORF ENST00000535977.5_1_16:677627-678308:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.23797607421875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 99.675 1 95.542 95.042 96.042 -4.1326 0 0 0 0.21486 1 19585 19585 0.40072 0 1 34868 11020 23458 23473 34264 34264 0.1126532432199383 PTFLPLGP 8 Unmodified _PTFLPLGP_ 0 0 0 REV__FLRT2|p.L542Cfs*5|1|0.43|ENSG00000185070|chr14:85623130-85623130|C/-|frameshift_variant REV__FLRT2|p.L542Cfs*5|1|0.43|ENSG00000185070|chr14:85623130-85623130|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.3353271484375 2 421.244547 840.47454 -0.16491 -6.9469E-05 2.3883 0.0010061 2.2234 0.0009366 421.2453810238251 39.4 0.48447 36.995 36.619 37.103 -2.4049 19 13 2 0 0 0 1.0095 1 6972 6972 5.7604 1.0044 1 605460 + 34869 18939 23459 23474 34265 34265 0.04792202845430893 PTFYPFLTG 9 Unmodified _PTFYPFLTG_ 0 0 0 NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENSG00000110076|ENST00000265459|NRXN2;ENST00000464307.5_1_11:64374670-64390737:-|nuORF;nc|ENSG00000110076|Q9P2S2-2|NRXN2 NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;nc|ENSG00000110076|Q9P2S2-2|NRXN2 nc|ENSG00000110076|Q9P2S2-2|NRXN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2671508789062 2 521.765843 1041.51713 -1.5386 -0.00080277 0.78516 0.00040967 -0.75341 -0.0003931 521.7663293806626 15.443 3.2314 14.09 13.507 16.739 -1.3534 185 92 4 0 0 0 0.67531 1 2600 2600 7.9102 7.9102 1 13595000 34870 2561;12280 23460 23475 34266 34266 -0.00196446817017204 PTGELQDSI 9 Unmodified _PTGELQDSI_ 0 0 0 nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25421142578125 2 480.237647 958.460741 -0.10011 -4.8074E-05 0.72946 0.00035032 0.62936 0.00030224 480.23739496791444 57.072 0.45599 54.178 53.993 54.448 -2.8944 22 12 3 0 0 0 0.44932 1 10956 10956 22.736 5.6234 1 957470 34871 4291 23461 23476 34267 34267 -0.020151194443315035 PTGFAPKEA 9 Unmodified _PTGFAPKEA_ 0 0 0 REV__ENST00000575656.5_1_16:24960717-24971282:-|nuORF REV__ENST00000575656.5_1_16:24960717-24971282:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2427062988281 2 459.239993 916.465432 -0.019933 -9.1543E-06 -0.080415 -3.693E-05 -0.10035 -4.6084E-05 459.2399221355482 49.715 1.1352 46.716 46.067 47.202 -2.999 124 32 5 0 0 0 0.52396 1 9104 9104 18.146 2.2992 1 34974000 + 34872 13098 23462 23477 34268 34268 0.0038580948909157087 PTGKGMNEK 9 Unmodified _PTGKGMNEK_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2437744140625 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 144.07 1 139.4 138.9 139.9 -4.6694 0 0 0 0.18705 1 28514 28514 25.399 2.663 1 + 34873 18819 23463 23478 34269 34269 -0.011950493596486922 PTGKYYLS 8 Unmodified _PTGKYYLS_ 0 0 0 REV__ENSG00000149260|ENST00000648180|CAPN5 REV__ENSG00000149260|ENST00000648180|CAPN5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1697082519531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 109.67 1 105.29 104.79 105.79 -4.3776 0 0 0 0.23881 1 21613 21613 0.12286 0.11948 1 + 34874 17004 23464 23479 34270 34270 0.003546936318457483 PTGQLFTLCSM 11 Unmodified _PTGQLFTLCSM_ 0 0 0 REV__ENST00000498152.1_1_3:113344918-113346552:+|nuORF REV__ENST00000498152.1_1_3:113344918-113346552:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2943725585938 2 599.28576 1196.55697 0.40822 0.00024464 -0.99449 -0.00059598 -0.58627 -0.00035134 599.285534225008 51.532 2.3856 48.487 48.084 50.47 -3.0453 211 67 7 0 0 0 0.76088 1 9433 9433 7.609 0.88579 1 809300000 + 34875 22408 23465 23480 34271 34271 -0.03345011200258341 PTGQLFTLCSM 11 Unmodified _PTGQLFTLCSM_ 0 0 0 REV__ENST00000498152.1_1_3:113344918-113346552:+|nuORF REV__ENST00000498152.1_1_3:113344918-113346552:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 599.28576 1196.55697 0.68169 0.00040853 -1.3505 -0.00080933 -0.66881 -0.00040081 599.2851580274057 48.365 1.8235 48.365 47.929 49.753 0 -0.088798 -0.00033013 NaN 7.609 175 51 6 NaN NaN NaN NaN 0 NaN NaN 0 841640000 + 34876 22408 23465 23480 -0.03345011200258341 PTGQLFTLCSM 11 Unmodified _PTGQLFTLCSM_ 0 0 0 REV__ENST00000498152.1_1_3:113344918-113346552:+|nuORF REV__ENST00000498152.1_1_3:113344918-113346552:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 599.28576 1196.55697 0.73187 0.0004386 -1.3394 -0.00080271 -0.60757 -0.00036411 599.2853418965744 51.374 2.4889 48.491 48.07 50.559 -2.8824 0.037856 -0.00031688 NaN 7.609 206 71 6 NaN NaN NaN NaN 0 NaN NaN 0 874100000 + 34877 22408 23465 23480 -0.03345011200258341 PTGQLFTLCSM 11 Unmodified _PTGQLFTLCSM_ 0 0 0 REV__ENST00000498152.1_1_3:113344918-113346552:+|nuORF REV__ENST00000498152.1_1_3:113344918-113346552:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 599.28576 1196.55697 0.40822 0.00024464 -0.99449 -0.00059598 -0.58627 -0.00035134 599.285534225008 51.532 2.3856 48.487 48.084 50.47 -3.0453 0.033733 9.6577E-05 NaN 7.609 211 67 7 NaN NaN NaN NaN 0 NaN NaN 0 809300000 + 34878 22408 23465 23480 -0.03345011200258341 PTGQLFTLCSM 11 Unmodified _PTGQLFTLCSM_ 0 0 0 REV__ENST00000498152.1_1_3:113344918-113346552:+|nuORF REV__ENST00000498152.1_1_3:113344918-113346552:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 599.28576 1196.55697 0.0034604 2.0738E-06 -0.62129 -0.00037233 -0.61783 -0.00037025 599.2857183468332 51.522 2.9096 48.471 48.027 50.937 -3.0517 0.01721 0.00054388 NaN 7.609 252 83 6 NaN NaN NaN NaN 0 NaN NaN 0 716930000 + 34879 22408 23465 23480 -0.03345011200258341 PTGSWGVGGP 10 Unmodified _PTGSWGVGGP_ 0 0 0 REV__ENST00000422715.1_1_22:21057767-21058517:+|nuORF REV__ENST00000422715.1_1_22:21057767-21058517:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23846435546875 2 457.721967 913.429381 0.15684 7.179E-05 0.10009 4.5814E-05 0.25693 0.0001176 457.7216338972993 60.743 0.49174 57.519 57.276 57.768 -3.2237 22 13 2 0 0 0 0.59928 1 11360 11360 19.257 2.3147 1 950100 + 34880 21522 23466 23481 34272 34272 -0.030796476877526402 PTGVTRRRI 9 Unmodified _PTGVTRRRI_ 0 0 0 nc|ENSG00000079308|Q9HBL0-1|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 352.5362548828125 3 352.552597 1054.63596 NaN NaN NaN NaN NaN NaN NaN 33.745 1 31.529 31.029 32.029 -2.2158 0 0 0 0.19623 1 5892 5892 0.0033805 0 1 34881 12238 23467 23482 34273 34273 0.11082764931234124 PTHELIQWVRD 11 Unmodified _PTHELIQWVRD_ 0 0 0 REV__PHKB|p.R951H|1|0.08|ENSG00000102893|chr16:47693464-47693464|G/A|missense_variant REV__PHKB|p.R951H|1|0.08|ENSG00000102893|chr16:47693464-47693464|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24603271484375 3 465.245609 1392.715 NaN NaN NaN NaN NaN NaN NaN 153.06 1 147.79 147.29 148.29 -5.2669 0 0 0 0.22632 1 29667 29667 0.026206 0 1 + 34882 24462 23468 23483 34274 34274 0.03434947374830699 PTHELIQWVRD 11 Unmodified _PTHELIQWVRD_ 0 0 0 REV__PHKB|p.R951H|1|0.08|ENSG00000102893|chr16:47693464-47693464|G/A|missense_variant REV__PHKB|p.R951H|1|0.08|ENSG00000102893|chr16:47693464-47693464|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.246826171875 3 465.245609 1392.715 NaN NaN NaN NaN NaN NaN NaN 175.81 1 170.94 170.44 171.44 -4.8739 0 0 0 0.22632 1 34964 34964 0.026206 0 1 + 34883 24462 23468 23483 34275 34275 0.03434947374830699 PTHGMGSL 8 Unmodified _PTHGMGSL_ 0 0 0 REV__ENSG00000166398|ENST00000299505|GARRE1 REV__ENSG00000166398|ENST00000299505|GARRE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.1965637207031 2 400.191988 798.369423 -0.19952 -7.9844E-05 1.072 0.000429 0.87247 0.00034915 400.1945241403062 66.085 0.48386 63.038 62.744 63.227 -3.047 17 13 2 0 0 0 8448 1 12819 12819 0.12286 0.058877 1 518930 + 34884 17843 23469 23484 34276 34276 -0.03782661622631167 PTHKAKPQ 8 Unmodified _PTHKAKPQ_ 0 0 0 USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8 USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.761474609375 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 164.8 1 160.01 159.51 160.51 -4.7898 0 0 0 0.22676 1 32960 32960 0.12286 0 1 34885 4180 23470 23485 34277 34277 0.05176624337184421 PTHSRPPRVI 10 Unmodified _PTHSRPPRVI_ 0 0 0 REV__ENST00000466801.5_1_2:232571605-232577558:+|nuORF REV__ENST00000466801.5_1_2:232571605-232577558:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.1804504394531 3 387.228001 1158.66217 NaN NaN NaN NaN NaN NaN NaN 116.01 1 111.52 111.02 112.02 -4.486 0 0 0 0.22588 1 22872 22872 3.5871 0 1 + 34886 21973 23471 23486 34278 34278 0.08919034102700607 PTIKWRRL 8 Unmodified _PTIKWRRL_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.G3718Afs*6|1|0.04|ENSG00000143341|chr1:186113995-186113995|G/-|frameshift_variant;HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant;HMCN1|p.Y2955Ifs*3|1|0.29|ENSG00000143341|chr1:186082933-186082934|-/A|frameshift_variant;HMCN1|p.L3491Hfs*10|1|0.12|ENSG00000143341|chr1:186095419-186095420|-/ATAT|frameshift_variant;ENST00000493413.1_1_1:185934944-185947193:+|nuORF;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1;HMCN1|p.V1339Gfs*22|1|0.42|ENSG00000143341|chr1:186000186-186000186|T/-|frameshift_variant nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5604248046875 3 357.225821 1068.65563 -0.284 -0.00010145 -0.86277 -0.00030821 -1.1468 -0.00040966 357.22549448708577 20.242 0.21289 20.242 20.1 20.313 0 7 5 2 0 0 0 1.0277 1 3314 3314 0.40072 0 1 307830 34887 4474 23472 23487 34279 34279 0.12405140941996251 PTKPLVRRAG 10 Unmodified _PTKPLVRRAG_ 0 0 0 nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A nc|ENSG00000182013|Q86V59-2|PNMA8A nc|ENSG00000182013|Q86V59-2|PNMA8A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7725830078125 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 93.47 1 89.626 89.126 90.126 -3.844 0 0 0 2.8426 1 17919 17919 0.26539 0.26201 1 34888 6758 23473 23488 34280 34280 0.12892222108075657 PTKPTHGEVL 10 Unmodified _PTKPTHGEVL_ 0 0 0 REV__ENST00000466368.1_1_7:150755543-150755699:+|nuORF REV__ENST00000466368.1_1_7:150755543-150755699:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20208740234375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 81.503 1 77.946 77.446 78.446 -3.557 0 0 0 0.22588 1 15918 15918 3.5871 0 1 + 34889 21969 23474 23489 34281 34281 0.0461712798901317 PTKRLRFPH 9 Unmodified _PTKRLRFPH_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|69|3|sense L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|69|3|sense L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|69|3|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.330810546875 2 576.343449 1150.67235 NaN NaN NaN NaN NaN NaN NaN 169.34 1 164.46 163.96 164.96 -4.873 0 0 0 0.19649 1 33438 33438 0.12781 0 1 34890 12054 23475 23490 34282 34282 0.10303641827931642 PTLECCHED 9 Unmodified _PTLECCHED_ 0 0 0 ENSG00000095739|ENST00000375533|BAMBI;ENST00000497699.1_1_10:28966826-28970509:+|nuORF ENSG00000095739|ENST00000375533|BAMBI ENSG00000095739|ENST00000375533|BAMBI MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6859130859375 2 523.699517 1045.38448 NaN NaN NaN NaN NaN NaN NaN 165.87 1 161.08 160.58 161.58 -4.7898 0 0 0 0.19652 1 33259 33259 0.029283 0.021006 1 34891 1867 23476 23491 34283 34283 -0.13639582607606826 PTLETPQPAE 10 Unmodified _PTLETPQPAE_ 0 0 0 nc|ENSG00000134444|Q9P260-2|RELCH;nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260-2|RELCH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2650756835938 2 541.771854 1081.52915 0.22868 0.00012389 0.094321 5.1101E-05 0.323 0.00017499 541.7721938908765 127.79 0.6617 122.99 122.7 123.36 -4.7958 26 18 2 0 0 0 0.68509 1 24526 24526 26.268 10.119 1 2209800 34892 12335 23477 23492 34284 34284 -0.0083487486449485 PTLETPQPAE 10 Unmodified _PTLETPQPAE_ 0 0 0 nc|ENSG00000134444|Q9P260-2|RELCH;nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260-2|RELCH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2769165039062 2 541.771854 1081.52915 0.23759 0.00012872 0.18909 0.00010245 0.42668 0.00023116 541.7720326640301 127.75 0.63656 123.05 122.68 123.31 -4.6998 28 17 2 0 0 0 0.57141 1 24553 24553 31.268 9.5217 1 1956700 34893 12335 23477 23492 34285 34285 -0.0083487486449485 PTLLLLKPPVL 11 Unmodified _PTLLLLKPPVL_ 0 0 0 REV__nc|ENSG00000161270|O60500-2|NPHS1 REV__nc|ENSG00000161270|O60500-2|NPHS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2825317382812 2 602.407392 1202.80023 NaN NaN NaN NaN NaN NaN NaN 67.127 1 64.018 63.518 64.518 -3.1086 0 0 0 0.22632 1 13018 13018 0.0059557 0 1 + 34894 17453 23478 23493 34286 34286 0.20694344578600976 PTLLRRPLS 9 Unmodified _PTLLRRPLS_ 0 0 0 REV__ENST00000372042.5_1_X:109964733-110005983:-|nuORF REV__ENST00000372042.5_1_X:109964733-110005983:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.2322082519531 3 351.557348 1051.65021 0.0048061 1.6896E-06 -0.050188 -1.7644E-05 -0.045381 -1.5954E-05 351.5572970193621 45.123 0.67078 45.123 44.777 45.448 0 46 18 3 0 0 0 0.32251 1 8470 8470 10.899 3.4219 1 2541800 + 34895 21017 23479 23494 34287 34287 0.12645417359499334 PTLLRRPLS 9 Unmodified _PTLLRRPLS_ 0 0 0 REV__ENST00000372042.5_1_X:109964733-110005983:-|nuORF REV__ENST00000372042.5_1_X:109964733-110005983:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 351.557348 1051.65021 0.0048061 1.6896E-06 -0.050188 -1.7644E-05 -0.045381 -1.5954E-05 351.5572970193621 45.123 0.67078 45.123 44.777 45.448 0 0.12844 -2.9627E-05 NaN 10.899 46 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2541800 + 34896 21017 23479 23494 0.12645417359499334 PTLLRRPLS 9 Unmodified _PTLLRRPLS_ 0 0 0 REV__ENST00000372042.5_1_X:109964733-110005983:-|nuORF REV__ENST00000372042.5_1_X:109964733-110005983:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 351.557348 1051.65021 0.011702 4.1139E-06 -0.23399 -8.226E-05 -0.22229 -7.8146E-05 351.55724620943687 47.891 0.81253 44.949 44.545 45.357 -2.9421 -0.045726 -0.00022348 NaN 10.899 47 22 3 NaN NaN NaN NaN 0 NaN NaN 0 2029200 + 34897 21017 23479 23494 0.12645417359499334 PTLPCSNRRST 11 Unmodified _PTLPCSNRRST_ 0 0 0 REV__ENSG00000278619|ENST00000614766|MRM1 REV__ENSG00000278619|ENST00000614766|MRM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.2021789550781 3 411.211911 1230.6139 NaN NaN NaN NaN NaN NaN NaN 66.98 1 63.871 63.371 64.371 -3.1086 0 0 0 0.23103 1 12988 12988 7.4771 1.2852 1 + 34898 19948 23480 23495 34288 34288 0.007821724004770658 PTLPGFRF 8 Unmodified _PTLPGFRF_ 0 0 0 REV__ENST00000472603.1_1_12:118462726-118464858:+|nuORF REV__ENST00000472603.1_1_12:118462726-118464858:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.1750183105469 3 312.176356 933.507237 NaN NaN NaN NaN NaN NaN NaN 178.42 1 178.42 177.92 178.92 0 0 0 0 0.21486 1 36963 36963 0.45834 0 1 + 34899 15246 23481 23496 34289 34289 0.03782409968277989 PTLSMICG 8 Unmodified _PTLSMICG_ 0 0 0 ENST00000509933.1_1_6:3231852-3232104:+|nuORF ENST00000509933.1_1_6:3231852-3232104:+|nuORF ENST00000509933.1_1_6:3231852-3232104:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.21234130859375 2 411.198425 820.382296 NaN NaN NaN NaN NaN NaN NaN 67.635 1 64.138 63.638 64.638 -3.4965 0 0 0 0.21323 1 12694 12694 14.582 0 1 34900 10738 23482 23497 34290 34290 -0.03507966554752784 PTLTYNYHHD 10 Unmodified _PTLTYNYHHD_ 0 0 0 REV__ENST00000588073.1_1_17:42231773-42239297:+|nuORF REV__ENST00000588073.1_1_17:42231773-42239297:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.750732421875 2 630.785827 1259.5571 NaN NaN NaN NaN NaN NaN NaN 116.88 1 116.88 116.38 117.38 0 0 0 0 0.22588 1 23019 23019 10.074 4.3421 1 + 34901 23285 23483 23498 34291 34291 -0.06229551884371176 PTNGKAGVPP 10 Unmodified _PTNGKAGVPP_ 0 0 0 REV__RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant REV__RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.1835632324219 3 313.174903 936.50288 NaN NaN NaN NaN NaN NaN NaN 90.17 1 86.31 85.81 86.81 -3.8595 0 0 0 0.22588 1 17640 17640 3.3196 0.3244 1 + 34902 15836 23484 23499 34292 34292 0.032089007547028814 PTPAHPVM 8 Unmodified _PTPAHPVM_ 0 0 0 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.E2016Rfs*13|1|0.27|ENSG00000053747|chr18:23901164-23901164|G/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.21875 2 425.218006 848.421459 NaN NaN NaN NaN NaN NaN NaN 98.252 1 93.983 93.483 94.483 -4.2692 0 0 0 0.21486 1 18778 18778 5.7604 2.8712 1 34903 1257 23485 23500 34293 34293 -0.008814982088892975 PTPARPVPRPR 11 Unmodified _PTPARPVPRPR_ 0 0 0 REV__nc|ENSG00000179403|Q6PCB0-2|VWA1 REV__nc|ENSG00000179403|Q6PCB0-2|VWA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7822265625 2 622.372738 1242.73092 0.39689 0.00024701 -2.5391 -0.0015803 -2.1422 -0.0013333 622.3728262089386 128.29 0.1393 128.29 128.21 128.35 0 5 3 2 0 0 0 0.95894 1 25334 25334 1.0715 0 1 993970 + 34904 18655 23486 23501 34294 34294 0.11926698402407965 PTPDALAH 8 Unmodified _PTPDALAH_ 0 0 0 ENST00000509093.5_1_4:83956215-83956278:+|nuORF ENST00000509093.5_1_4:83956215-83956278:+|nuORF ENST00000509093.5_1_4:83956215-83956278:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.10748291015625 2 411.211235 820.407917 NaN NaN NaN NaN NaN NaN NaN 50.137 1 50.137 49.637 50.637 0 0 0 0 0.21486 1 9490 9490 9.3474 3.587 1 34905 10726 23487 23502 34295 34295 -0.009470327164876835 PTPRAHRFP 9 Unmodified _PTPRAHRFP_ 0 0 0 ENST00000487563.1_1_7:100853563-100853710:-|nuORF ENST00000487563.1_1_7:100853563-100853710:-|nuORF ENST00000487563.1_1_7:100853563-100853710:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015075683594 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 77.918 1 77.918 77.418 78.418 0 0 0 0 0.23508 1 15158 15158 5.2969 1.3525 1 34906 10471 23488 23503 34296 34296 0.047508068684237514 PTPRAHRFP 9 Unmodified _PTPRAHRFP_ 0 0 0 ENST00000487563.1_1_7:100853563-100853710:-|nuORF ENST00000487563.1_1_7:100853563-100853710:-|nuORF ENST00000487563.1_1_7:100853563-100853710:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 78.192 1 78.192 77.692 78.692 0 0 0 0 0.23508 1 15215 15215 2.7352 0 1 34907 10471 23488 23503 34297 34297 0.047508068684237514 PTPRAHRFP 9 Unmodified _PTPRAHRFP_ 0 0 0 ENST00000487563.1_1_7:100853563-100853710:-|nuORF ENST00000487563.1_1_7:100853563-100853710:-|nuORF ENST00000487563.1_1_7:100853563-100853710:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20172119140625 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 81.756 1 78.068 77.568 78.568 -3.6879 0 0 0 0.23508 1 15580 15580 5.2969 0 1 34908 10471 23488 23503 34298 34298 0.047508068684237514 PTPTSQAPPAQ 11 Unmodified _PTPTSQAPPAQ_ 0 0 0 REV__PRRC2A|p.T807Nfs*10|1|0.5|ENSG00000204469|chr6:31630754-31630755|-/A|frameshift_variant REV__PRRC2A|p.T807Nfs*10|1|0.5|ENSG00000204469|chr6:31630754-31630755|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7769165039062 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 53.21 1 50.123 49.623 50.623 -3.0876 0 0 0 0.20577 1 9792 9792 17.443 1.2935 1 + 34909 19539 23489 23504 34299 34299 -0.0026405277033063612 PTPVAGAKLLK 11 Unmodified _PTPVAGAKLLK_ 0 0 0 REV__ENST00000467683.5_1_1:154523946-154525290:-|nuORF REV__ENST00000467683.5_1_1:154523946-154525290:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78564453125 2 547.850242 1093.68593 NaN NaN NaN NaN NaN NaN NaN 104.62 1 100.4 99.902 100.9 -4.2183 0 0 0 0.23379 1 20581 20581 5.2969 1.3525 1 + 34910 21985 23490 23505 34300 34300 0.14283454816495578 PTRKTPESF 9 Unmodified _PTRKTPESF_ 0 0 0 nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 nc|ENSG00000063245|Q9Y6I3-3|EPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2764892578125 2 531.782556 1061.55056 0.29233 0.00015545 -0.33407 -0.00017765 -0.041742 -2.2198E-05 531.7823940926621 44.325 0.76211 41.559 41.323 42.085 -2.7661 70 21 4 0 0 0 0.5059 1 8008 8008 19.257 1.1106 1 19720000 34911 1328 23491 23506 34301 34301 0.022245549549097632 PTRNGTQPPP 10 Unmodified _PTRNGTQPPP_ 0 0 0 nc|ENSG00000144366|Q9UBP9-3|GULP1;nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1 nc|ENSG00000144366|Q9UBP9-3|GULP1 nc|ENSG00000144366|Q9UBP9-3|GULP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2802124023438 2 532.777805 1063.54106 0.68023 0.00036241 -0.52367 -0.000279 0.15656 8.3411E-05 532.7774467834004 22.517 0.83713 21.043 20.34 21.177 -1.4742 29 23 2 0 0 0 0.65996 1 3797 3797 15.248 3.7538 1 420280 34912 4549 23492 23507 34302 34302 0.011827866693693068 PTRSTVPSL 9 Unmodified _PTRSTVPSL_ 0 0 0 REV__EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant REV__EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73309326171875 2 479.271824 956.529095 -0.059877 -2.8698E-05 0.056013 2.6845E-05 -0.0038644 -1.8521E-06 479.27180281181046 73.034 0.63194 73.034 72.715 73.347 0 29 17 2 0 0 0 0.54076 1 14143 14143 26.884 0 1 4064900 + 34913 18840 23493 23508 34303 34303 0.04909169926179402 PTRSTVPSL 9 Unmodified _PTRSTVPSL_ 0 0 0 REV__EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant REV__EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7381591796875 2 479.271824 956.529095 0.15535 7.4455E-05 0.14681 7.0361E-05 0.30216 0.00014482 479.2718724474748 76.457 0.70229 72.823 72.477 73.179 -3.6337 33 19 2 0 0 0 0.49001 1 14548 14548 21.747 5.8995 1 2124800 + 34914 18840 23493 23508 34304 34304 0.04909169926179402 PTRSVDQLF 9 Unmodified _PTRSVDQLF_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2869873046875 2 531.782556 1061.55056 0.0028971 1.5406E-06 0.0049839 2.6503E-06 0.0078809 4.1909E-06 531.7825147426023 44.336 0.80523 41.546 41.254 42.059 -2.79 70 22 4 0 0 0 0.52396 1 8311 8311 18.146 1.0335 1 23882000 + 34915 14574 23494 23509 34305 34305 0.022245549548870258 PTRSVDQLF 9 Unmodified _PTRSVDQLF_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2870483398438 2 531.782556 1061.55056 0.29233 0.00015545 -0.33407 -0.00017765 -0.041742 -2.2198E-05 531.7823940926621 44.325 0.76211 41.559 41.323 42.085 -2.7661 70 21 4 0 0 0 0.52396 1 8017 8017 18.146 1.9972 1 19720000 + 34916 14574 23494 23509 34306 34306 0.022245549548870258 PTRSVDQLF 9 Unmodified _PTRSVDQLF_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.274658203125 2 531.782556 1061.55056 -0.03123 -1.6607E-05 0.15116 8.0384E-05 0.11993 6.3777E-05 531.7825935363267 44.39 0.91129 41.643 41.291 42.202 -2.7475 76 25 5 0 0 0 0.52396 1 8025 8025 18.146 1.0335 1 16909000 + 34917 14574 23494 23509 34307 34307 0.022245549548870258 PTRTTSPVA 9 Unmodified _PTRTTSPVA_ 0 0 0 ENST00000342665.4_2_20:308281-308551:+|nuORF ENST00000342665.4_2_20:308281-308551:+|nuORF ENST00000342665.4_2_20:308281-308551:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2561340332031 2 465.256174 928.497795 0.46264 0.00021524 -0.79333 -0.0003691 -0.33069 -0.00015386 465.2557698042003 46.285 0.83098 46.285 45.864 46.695 0 57 23 3 0 0 0 0.21532 1 8745 8745 36.506 1.5741 1 13463000 34918 8863 23495 23510 34308 34308 0.03068596892092046 PTRTTSPVA 9 Unmodified _PTRTTSPVA_ 0 0 0 ENST00000342665.4_2_20:308281-308551:+|nuORF ENST00000342665.4_2_20:308281-308551:+|nuORF ENST00000342665.4_2_20:308281-308551:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2559509277344 2 465.256174 928.497795 -0.16301 -7.5841E-05 -0.74308 -0.00034572 -0.90609 -0.00042156 465.2557890085448 49.068 0.76709 46.187 45.789 46.556 -2.8811 56 21 3 0 0 0 0.27986 1 9327 9327 32.786 1.5173 1 18740000 34919 8863 23495 23510 34309 34309 0.03068596892092046 PTRVIEAGL 9 Unmodified _PTRVIEAGL_ 0 0 0 REV__nc|ENSG00000160200|P35520-2|CBS REV__nc|ENSG00000160200|P35520-2|CBS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7262268066406 2 478.282192 954.549831 NaN NaN NaN NaN NaN NaN NaN 150.75 1 146.02 145.52 146.52 -4.7323 0 0 0 0.18489 1 29945 29945 17.572 0.52333 1 + 34920 17402 23496 23511 34310 34310 0.07073760305831911 PTSEEEEEE 9 Unmodified _PTSEEEEEE_ 0 0 0 REV__ENSG00000083782|ENST00000261172|EPYC REV__ENSG00000083782|ENST00000261172|EPYC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.138427734375 3 360.140141 1077.39859 NaN NaN NaN NaN NaN NaN NaN 81.923 1 78.235 77.735 78.735 -3.6879 0 0 0 0.23508 1 15613 15613 4.897 2.1618 1 + 34921 14457 23497 23512 34311 34311 -0.13700935373981338 PTSHDPMH 8 Unmodified _PTSHDPMH_ 0 0 0 REV__ENSG00000162482|ENST00000361640|AKR7A3 REV__ENSG00000162482|ENST00000361640|AKR7A3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5407409667969 2 461.197802 920.381051 -0.060622 -2.7959E-05 1.5515 0.00071553 1.4908 0.00068757 461.19837703237323 45.993 0.79045 43.128 42.762 43.553 -2.8653 30 22 2 0 0 0 0.98792 1 8411 8411 5.2307 0 1 1028100 + 34922 17501 23498 23513 34312 34312 -0.08232464599302602 PTSPAAARC 9 Unmodified _PTSPAAARC_ 0 0 0 ENST00000375150.6_1_6:32116492-32119883:-|nuORF;ENST00000495191.5_1_6:32116492-32118763:-|nuORF;ENST00000211413.9_1_6:32116492-32119704:-|nuORF ENST00000375150.6_1_6:32116492-32119883:-|nuORF ENST00000375150.6_1_6:32116492-32119883:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.215087890625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 140.05 1 135.21 134.71 135.71 -4.8492 0 0 0 0.23508 1 27006 27006 10.824 0.64053 1 34923 8096 23499 23514 34313 34313 -0.023875877026057424 PTSPGNHTNY 10 Unmodified _PTSPGNHTNY_ 0 0 0 REV__nc|ENSG00000064655|O00167-3|EYA2 REV__nc|ENSG00000064655|O00167-3|EYA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7952270507812 2 544.243795 1086.47304 0.23764 0.00012934 -1.3601 -0.00074024 -1.1225 -0.00061091 544.7456909097202 101.27 0.21359 97.108 96.979 97.192 -4.1594 7 5 2 0 0 0 0.84281 1 19915 19915 5.7319 0 1 483870 + 34924 14170 23500 23515 34314 34314 -0.06674082981294305 PTSRPVVPEP 10 Unmodified _PTSRPVVPEP_ 0 0 0 REV__nc|ENSG00000115207|Q8WUA4-2|GTF3C2 REV__nc|ENSG00000115207|Q8WUA4-2|GTF3C2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 81.998 1 78.31 77.81 78.81 -3.6879 0 0 0 0.22588 1 15631 15631 9.544 0 1 + 34925 15409 23501 23516 34315 34315 0.0461712798901317 PTSVRICRF 9 Unmodified _PTSVRICRF_ 0 0 0 ENST00000269122.7_2_17:57744224-57744305:+|nuORF ENST00000269122.7_2_17:57744224-57744305:+|nuORF ENST00000269122.7_2_17:57744224-57744305:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2014465332031 3 360.199054 1077.57533 -0.26025 -9.3741E-05 0.35686 0.00012854 0.096611 3.4799E-05 360.5329958038603 82.084 0.69777 78.527 78.202 78.9 -3.557 31 19 2 0 0 0 0.67174 1 15974 15974 8.1555 1.4324 1 2338900 34926 8393 23502 23517 34316 34316 0.03964911556613515 PTTDHGSKKP 10 Unmodified _PTTDHGSKKP_ 0 0 0 nc|ENSG00000174325|Q969H9|DIRC1 nc|ENSG00000174325|Q969H9|DIRC1 nc|ENSG00000174325|Q969H9|DIRC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0729675292969 3 356.520851 1066.54072 -0.6307 -0.00022486 0.86168 0.00030721 0.23098 8.2349E-05 356.521168032865 16.64 0.48825 15.424 15.182 15.67 -1.2159 32 13 3 0 0 0 0.91149 1 2594 2594 1.7423 0 1 645780 34927 12470 23503 23518 34317 34317 0.010113669495240174 PTTHPPSH 8 Unmodified _PTTHPPSH_ 0 0 0 nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000496608.1_1_1:41236053-41236497:+|nuORF nc|ENSG00000066136|Q13952-3|NFYC nc|ENSG00000066136|Q13952-3|NFYC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2353820800781 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 117.85 1 113.44 112.94 113.94 -4.4088 0 0 0 0.21486 1 22679 22679 8.5933 0 1 34928 12227 23504 23519 34318 34318 -0.027245144849530334 PTVARENE 8 Unmodified _PTVARENE_ 0 0 0 REV__nc|ENSG00000186635|Q96P48-5|ARAP1 REV__nc|ENSG00000186635|Q96P48-5|ARAP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2284851074219 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 67.939 1 64.831 64.331 65.331 -3.1086 0 0 0 0.21039 1 13183 13183 16.942 1.0951 1 + 34929 19042 23505 23520 34319 34319 -0.0148856652166387 PTVGTMDQSY 10 Unmodified _PTVGTMDQSY_ 0 0 0 REV__nc|ENSG00000173715|Q8N6T0-5|TOP6BL REV__nc|ENSG00000173715|Q8N6T0-5|TOP6BL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 549.7425537109375 2 549.742239 1097.46993 NaN NaN NaN NaN NaN NaN NaN 170.63 1 165.76 165.26 166.26 -4.873 0 0 0 0.22588 1 33776 33776 5.7319 0.50118 1 + 34930 18372 23506 23521 34320 34320 -0.07491094150304889 PTVRHSIW 8 Unmodified _PTVRHSIW_ 0 0 0 REV__ENST00000344736.8_1_X:153594750-153594834:-|nuORF REV__ENST00000344736.8_1_X:153594750-153594834:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 498.7752990722656 2 498.274701 994.534849 0.47549 0.00023692 -1.6179 -0.00080615 -1.1424 -0.00056923 498.27383046874706 110.01 0.38393 105.83 105.65 106.04 -4.1826 19 10 3 0 0 0 8448 1 21206 21206 1.7423 1.6194 1 1771700 + 34931 20744 23507 23522 34321 34321 0.03736313228500876 PTVRHSIW 8 Unmodified _PTVRHSIW_ 0 0 0 REV__ENST00000344736.8_1_X:153594750-153594834:-|nuORF REV__ENST00000344736.8_1_X:153594750-153594834:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 498.274701 994.534849 0.43803 0.00021826 -2.0603 -0.0010266 -1.6223 -0.00080833 498.27335400033826 105.96 0.51249 105.96 105.78 106.29 0 0.13744 -0.00079706 NaN 1.7423 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1627700 + 34932 20744 23507 23522 0.03736313228500876 PTVRHSIW 8 Unmodified _PTVRHSIW_ 0 0 0 REV__ENST00000344736.8_1_X:153594750-153594834:-|nuORF REV__ENST00000344736.8_1_X:153594750-153594834:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 498.274701 994.534849 -0.36195 -0.00018035 -1.0144 -0.00050544 -1.3763 -0.00068579 498.2740737155505 110.12 0.41586 105.75 105.55 105.96 -4.3776 -0.072644 0.00024524 NaN 1.7423 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1999300 + 34933 20744 23507 23522 0.03736313228500876 PTVRHSIW 8 Unmodified _PTVRHSIW_ 0 0 0 REV__ENST00000344736.8_1_X:153594750-153594834:-|nuORF REV__ENST00000344736.8_1_X:153594750-153594834:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 498.274701 994.534849 -0.30618 -0.00015256 -0.74492 -0.00037118 -1.0511 -0.00052374 498.2740294246598 110.21 0.41415 105.74 105.57 105.98 -4.4725 -0.078576 0.00051377 NaN 1.7423 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1475300 + 34934 20744 23507 23522 0.03736313228500876 PTVRHSIW 8 Unmodified _PTVRHSIW_ 0 0 0 REV__ENST00000344736.8_1_X:153594750-153594834:-|nuORF REV__ENST00000344736.8_1_X:153594750-153594834:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 498.274701 994.534849 0.47549 0.00023692 -1.6179 -0.00080615 -1.1424 -0.00056923 498.27383046874706 110.01 0.38393 105.83 105.65 106.04 -4.1826 0.013784 -0.00035617 NaN 1.7423 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1771700 + 34935 20744 23507 23522 0.03736313228500876 PTVSYLVAA 9 Unmodified _PTVSYLVAA_ 0 0 0 REV__ENSG00000135517|ENST00000652304|MIP REV__ENSG00000135517|ENST00000652304|MIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.22747802734375 2 460.758018 919.501483 -0.015926 -7.3382E-06 0.25218 0.0001162 0.23626 0.00010886 460.758075113864 93.152 0.43752 93.152 92.923 93.361 0 23 12 3 0 0 0 0.60698 1 18246 18246 16.942 0 1 3854900 + 34936 16273 23508 23523 34322 34322 0.03851266665935782 PTWDLPRRL 9 Unmodified _PTWDLPRRL_ 0 0 0 ENST00000290079.8_1_9:139687350-139687656:+|nuORF ENST00000290079.8_1_9:139687350-139687656:+|nuORF ENST00000290079.8_1_9:139687350-139687656:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 385.2207336425781 3 385.220735 1152.64038 NaN NaN NaN NaN NaN NaN NaN 124.93 1 120.16 119.66 120.66 -4.7681 0 0 0 0.23508 1 23991 23991 4.897 2.3985 1 34937 8469 23509 23524 34323 34323 0.07016229354144343 PTWSLERTCS 10 Unmodified _PTWSLERTCS_ 0 0 0 REV__nc|ENSG00000187742|Q96T21-2|SECISBP2 REV__nc|ENSG00000187742|Q96T21-2|SECISBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2750854492188 2 590.27678 1178.53901 NaN NaN NaN NaN NaN NaN NaN 55.407 1 52.269 51.769 52.769 -3.1377 0 0 0 0.17567 1 10285 10285 32.786 5.1569 1 + 34938 19109 23510 23525 34324 34324 -0.043120101307295045 PVAANPEEA 9 Unmodified _PVAANPEEA_ 0 0 0 REV__ENSG00000096384|ENST00000371646|HSP90AB1 REV__ENSG00000096384|ENST00000371646|HSP90AB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.21820068359375 2 449.219257 896.423961 NaN NaN NaN NaN NaN NaN NaN 52.452 1 52.452 51.952 52.952 0 0 0 0 0.15832 1 9971 9971 4.7159 3.2608 1 + 34939 14621 23511 23526 34325 34325 -0.028393712702495577 PVAAPSGA 8 Unmodified _PVAAPSGA_ 0 0 0 ENST00000481121.5_1_6:31921790-31926696:-|nuORF;ENST00000492185.5_1_6:31922795-31926696:-|nuORF;ENST00000491139.5_1_6:31924712-31926696:-|nuORF ENST00000481121.5_1_6:31921790-31926696:-|nuORF ENST00000481121.5_1_6:31921790-31926696:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 335.1834716796875 2 335.181946 668.34934 NaN NaN NaN NaN NaN NaN NaN 33.158 1 31.011 30.511 31.511 -2.1468 0 0 0 0.23664 1 5776 5776 3.2813 0 1 34940 10367 23512 23527 34326 34326 0.0018991070904803564 PVAATYPMLNK 11 Unmodified _PVAATYPMLNK_ 0 0 0 ENST00000582287.6_1_19:18545725-18546537:-|nuORF;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF ENST00000582287.6_1_19:18545725-18546537:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2759399414062 2 602.823366 1203.63218 0.39469 0.00023793 1.4432 0.00086997 1.8379 0.0011079 603.3269492071761 147.49 0.1377 147.49 147.43 147.57 0 5 3 2 0 0 0 0.93546 1 29503 29503 4.897 0 1 2061900 34941 2328 23513 23528 34327 34327 0.03850914322470089 PVADIATLRI 10 Unmodified _PVADIATLRI_ 0 0 0 ENST00000465521.1_1_2:74757592-74758334:+|nuORF;ENST00000484881.5_1_2:74756974-74758788:+|nuORF;ENST00000484352.5_1_2:74757313-74758690:+|nuORF;nc|ENSG00000115317|O43464-2|HTRA2;nc|ENSG00000115317|O43464-4|HTRA2;nc|ENSG00000115317|O43464-3|HTRA2;ENSG00000115317|ENST00000258080|HTRA2 ENST00000465521.1_1_2:74757592-74758334:+|nuORF ENST00000465521.1_1_2:74757592-74758334:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5542297363281 3 356.885241 1067.63389 -0.18215 -6.5006E-05 0.28034 0.00010005 0.098194 3.5044E-05 356.88529659779766 84.56 0.73462 84.56 84.208 84.942 0 51 20 3 0 0 0 0.74847 1 16442 16442 6.1918 2.0023 1 8975500 34942 2846 23514 23529 34328 34328 0.10278291402732975 PVAEAPPG 8 Unmodified _PVAEAPPG_ 0 0 0 REV__ENSG00000282936|ENST00000634965|unknown REV__ENSG00000282936|ENST00000634965|unknown MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.2375793457031 2 369.195054 736.375555 NaN NaN NaN NaN NaN NaN NaN 55.768 1 55.768 55.268 56.268 0 0 0 0 0.21799 1 10650 10650 9.544 3.3521 1 + 34943 19954 23515 23530 34329 34329 -0.003178201194828034 PVAELCERGRD 11 Unmodified _PVAELCERGRD_ 0 0 0 sp|P69336|US19_HCMVATransmembraneproteinHWLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US19PE=2SV=1;sp|F5HAR3|US19_HCMVMTransmembraneproteinUS19OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US19PE=2SV=1 sp|P69336|US19_HCMVATransmembraneproteinHWLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US19PE=2SV=1 sp|P69336|US19_HCMVATransmembraneproteinHWLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US19PE=2SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7559204101562 2 622.806236 1243.59792 NaN NaN NaN NaN NaN NaN NaN 160.37 1 160.37 159.87 160.87 0 0 0 0 0.23264 1 32205 32205 6.2058 1.3088 1 34944 25718 23516 23531 34330 34330 -0.014135338364212657 PVAGIFAVM 9 Unmodified _PVAGIFAVM_ 0 0 0 REV__TAOK1-VMP1|1|fusion REV__TAOK1-VMP1|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.755126953125 2 452.751682 903.48881 0.5372 0.00024322 -0.42687 -0.00019326 0.11033 4.9952E-05 452.7514214839815 111.9 4.5468 107.67 107.08 111.62 -4.2289 220 129 3 0 0 0 0.30516 1 21457 21457 0.37959 0.25177 1 11186000 + 34945 24771 23517 23532 34331 34331 0.03320532002055643 PVAGKHQLG 9 Unmodified _PVAGKHQLG_ 0 0 0 ENST00000533256.5_2_11:706755-709606:+|nuORF;ENST00000529680.5_1_11:706755-709609:+|nuORF;ENST00000531348.5_2_11:706755-709606:+|nuORF ENST00000533256.5_2_11:706755-709606:+|nuORF ENST00000533256.5_2_11:706755-709606:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7603454589844 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 172.92 1 168.03 167.53 168.53 -4.8977 0 0 0 0.19684 1 34316 34316 0.37959 0 1 34946 10948 23518 23533 34332 34332 0.05176624337184421 PVAHSIEY 8 Unmodified _PVAHSIEY_ 0 0 0 CSRNP3|p.V309I|1|0.29|ENSG00000178662|chr2:165678920-165678920|G/A|missense_variant CSRNP3|p.V309I|1|0.29|ENSG00000178662|chr2:165678920-165678920|G/A|missense_variant CSRNP3|p.V309I|1|0.29|ENSG00000178662|chr2:165678920-165678920|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23211669921875 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 157.13 1 157.13 156.63 157.63 0 0 0 0 0.23294 1 31531 31531 0.063987 0 1 34947 735 23519 23534 34333 34333 -0.01086477027968158 PVALGHHT 8 Unmodified _PVALGHHT_ 0 0 0 ENST00000593418.1_3_19:7762435-7764719:-|nuORF ENST00000593418.1_3_19:7762435-7764719:-|nuORF ENST00000593418.1_3_19:7762435-7764719:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 416.1915588378906 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 76.036 1 76.036 75.536 76.536 0 0 0 0 0.21486 1 14774 14774 6.3541 0 1 34948 11645 23520 23535 34334 34334 0.017883797573290394 PVALLKILVK 10 Unmodified _PVALLKILVK_ 0 0 0 FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant FBXO8|p.R286Gfs*19|1|0.21|ENSG00000164117|chr4:174237516-174237516|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.773681640625 2 547.389003 1092.76345 0.33698 0.00018446 -3.6875 -0.0020185 -3.3505 -0.0018341 547.888700190201 158.26 0.17918 158.26 158.15 158.33 0 6 4 2 0 0 0 0.91149 1 31782 31782 0 0 1 1247800 34949 11806 23521 23536 34335 34335 0.22078092752690281 PVAPECLTV 9 Unmodified _PVAPECLTV_ 0 0 0 ENST00000449692.3_1_11:65684934-65684991:-|nuORF ENST00000449692.3_1_11:65684934-65684991:-|nuORF ENST00000449692.3_1_11:65684934-65684991:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16937255859375 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 110.18 1 110.18 109.68 110.68 0 0 0 0 0.19661 1 21670 21670 0.073264 0 1 34950 9967 23522 23537 34336 34336 0.006916204141930393 PVAPSVSY 8 Unmodified _PVAPSVSY_ 0 0 0 REV__ENSG00000165478|ENST00000298251|HEPACAM REV__ENSG00000165478|ENST00000298251|HEPACAM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.17620849609375 2 410.215986 818.417419 NaN NaN NaN NaN NaN NaN NaN 96.909 1 92.811 92.311 93.311 -4.0978 0 0 0 0.21486 1 19009 19009 11.114 0.93107 1 + 34951 17773 23523 23538 34337 34337 0.0009473556905277292 PVASCPDAR 9 Unmodified _PVASCPDAR_ 0 0 0 ENST00000473880.5_1_7:102109277-102110330:+|nuORF;ENSG00000161036|ENST00000292616|LRWD1 ENST00000473880.5_1_7:102109277-102110330:+|nuORF ENST00000473880.5_1_7:102109277-102110330:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2229309082031 2 458.221277 914.428001 NaN NaN NaN NaN NaN NaN NaN 162.75 1 157.61 157.11 158.11 -5.1438 0 0 0 0.20628 1 31635 31635 21.747 3.6117 1 34952 5282 23524 23539 34338 34338 -0.032636050481755774 PVASCPDAR 9 Unmodified _PVASCPDAR_ 0 0 0 ENST00000473880.5_1_7:102109277-102110330:+|nuORF;ENSG00000161036|ENST00000292616|LRWD1 ENST00000473880.5_1_7:102109277-102110330:+|nuORF ENST00000473880.5_1_7:102109277-102110330:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2232666015625 2 458.221277 914.428001 NaN NaN NaN NaN NaN NaN NaN 164.19 1 159.13 158.63 159.63 -5.0648 0 0 0 0.23508 1 32003 32003 13.042 0.51092 1 34953 5282 23524 23539 34339 34339 -0.032636050481755774 PVASMEFAA 9 Unmodified _PVASMEFAA_ 0 0 0 nc|ENSG00000182973|Q9H9A5-6|CNOT10;nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10;nc|ENSG00000182973|Q9H9A5-5|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.156494140625 3 308.149478 921.426604 NaN NaN NaN NaN NaN NaN NaN 104.94 1 104.94 104.44 105.44 0 0 0 0 0.23508 1 20626 20626 1.1933 0 1 34954 12503 23525 23540 34340 34340 -0.037252391369293036 PVATGGHV 8 Unmodified _PVATGGHV_ 0 0 0 REV__ENST00000356098.9_1_22:51065986-51066424:-|nuORF REV__ENST00000356098.9_1_22:51065986-51066424:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.2010803222656 2 369.20067 736.386788 NaN NaN NaN NaN NaN NaN NaN 71.502 1 71.502 71.002 72.002 0 0 0 0 0.23366 1 13855 13855 0.25148 0.12861 1 + 34955 20006 23526 23541 34341 34341 0.008050019746519865 PVAVGQFH 8 Unmodified _PVAVGQFH_ 0 0 0 ENSG00000176160|ENST00000323777|HSF5;HSF5|p.H238Lfs*84|1|0.04|ENSG00000176160|chr17:58480102-58480105|GGAT/-|frameshift_variant;nc|ENSG00000176160|Q4G112-2|HSF5 ENSG00000176160|ENST00000323777|HSF5 ENSG00000176160|ENST00000323777|HSF5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.2695007324219 2 427.729595 853.444637 -0.4255 -0.000182 0.52511 0.0002246 0.09961 4.2606E-05 427.7297490221337 18.187 0.3014 16.915 16.764 17.066 -1.2722 18 8 3 0 0 0 1.0095 1 2711 2711 10.183 4.423 1 1523700 34956 6452 23527 23542 34342 34342 0.012052639000899035 PVAVGQFH 8 Unmodified _PVAVGQFH_ 0 0 0 ENSG00000176160|ENST00000323777|HSF5;HSF5|p.H238Lfs*84|1|0.04|ENSG00000176160|chr17:58480102-58480105|GGAT/-|frameshift_variant;nc|ENSG00000176160|Q4G112-2|HSF5 ENSG00000176160|ENST00000323777|HSF5 ENSG00000176160|ENST00000323777|HSF5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 427.729595 853.444637 0.04004 1.7126E-05 -0.11435 -4.8913E-05 -0.074314 -3.1786E-05 427.72948393816387 16.977 0.46167 16.977 16.816 17.277 0 0.028263 -0.00028685 NaN 10.183 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 7073400 34957 6452 23527 23542 0.012052639000899035 PVAVGQFH 8 Unmodified _PVAVGQFH_ 0 0 0 ENSG00000176160|ENST00000323777|HSF5;HSF5|p.H238Lfs*84|1|0.04|ENSG00000176160|chr17:58480102-58480105|GGAT/-|frameshift_variant;nc|ENSG00000176160|Q4G112-2|HSF5 ENSG00000176160|ENST00000323777|HSF5 ENSG00000176160|ENST00000323777|HSF5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 427.729595 853.444637 -0.22688 -9.7043E-05 0.24065 0.00010293 0.013774 5.8915E-06 427.729607282412 18.265 0.31079 16.954 16.831 17.142 -1.3109 0.0053157 1.6848E-05 NaN 10.183 23 8 4 NaN NaN NaN NaN 0 NaN NaN 0 3650500 34958 6452 23527 23542 0.012052639000899035 PVAWVPPY 8 Unmodified _PVAWVPPY_ 0 0 0 ENST00000560219.2_1_15:90321464-90321809:+|nuORF ENST00000560219.2_1_15:90321464-90321809:+|nuORF ENST00000560219.2_1_15:90321464-90321809:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 89.853 1 89.853 89.353 90.353 0 0 0 0 0.21486 1 17551 17551 1.8442 0.77278 1 34959 11284 23528 23543 34343 34343 0.018796052196989876 PVCCGCNMC 9 Unmodified _PVCCGCNMC_ 0 0 0 REV__ENST00000272645.8_1_2:128604526-128604598:-|nuORF REV__ENST00000272645.8_1_2:128604526-128604598:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25811767578125 2 465.143955 928.273356 NaN NaN NaN NaN NaN NaN NaN 142.79 1 137.89 137.39 138.39 -4.8982 0 0 0 0.23508 1 27554 27554 2.3027 1.5091 1 + 34960 20278 23529 23544 34344 34344 -0.19364960112568497 PVCEVRLLVD 10 Unmodified _PVCEVRLLVD_ 0 0 0 ENST00000443945.6_1_13:47127426-47279607:+|nuORF ENST00000443945.6_1_13:47127426-47279607:+|nuORF ENST00000443945.6_1_13:47127426-47279607:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2126159667969 3 381.54612 1141.61653 0.076711 2.9269E-05 -0.016923 -6.457E-06 0.059788 2.2812E-05 381.5460939150128 76.535 0.4428 72.813 72.619 73.062 -3.7227 21 12 2 0 0 0 0.91149 1 14517 14517 1.9064 0 1 1289600 34961 9918 23530 23545 34345 34345 0.051386278054451395 PVCGCAGL 8 Unmodified _PVCGCAGL_ 0 0 0 REV__ENST00000178640.9_1_15:67835419-67835617:+|nuORF REV__ENST00000178640.9_1_15:67835419-67835617:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015686035156 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 123.79 1 119.21 118.71 119.71 -4.5757 0 0 0 0.21486 1 24403 24403 6.3541 3.4649 1 + 34962 19987 23531 23546 34346 34346 -0.056207914147762494 PVCHSKLD 8 Unmodified _PVCHSKLD_ 0 0 0 nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2 nc|ENSG00000170921|Q9HCD6|TANC2 nc|ENSG00000170921|Q9HCD6|TANC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 300.1519775390625 3 300.153222 897.437837 NaN NaN NaN NaN NaN NaN NaN 112.33 1 107.8 107.3 108.3 -4.5259 0 0 0 0.21486 1 21562 21562 1.6526 1.1943 1 34963 6112 23532 23547 34347 34347 -0.014984170427851495 PVCLAQVK 8 Unmodified _PVCLAQVK_ 0 0 0 BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant;BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 429.75677490234375 2 429.249306 856.484059 0.11426 4.9045E-05 -0.29862 -0.00012818 -0.18436 -7.9136E-05 429.2491220018524 62.829 0.63028 59.413 59.051 59.682 -3.4158 35 17 3 0 0 0 8448 1 11670 11670 6.2058 2.9245 1 2582800 34964 341 23533 23548 34348 34348 0.05007647859304143 PVCLAQVK 8 Unmodified _PVCLAQVK_ 0 0 0 BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant;BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 429.249306 856.484059 -0.18096 -7.7677E-05 0.029225 1.2545E-05 -0.15173 -6.5132E-05 429.2493042851442 59.679 0.53786 59.679 59.321 59.859 0 0.21684 0.00012474 NaN 6.2058 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1893500 34965 341 23533 23548 0.05007647859304143 PVCLAQVK 8 Unmodified _PVCLAQVK_ 0 0 0 BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant;BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 429.249306 856.484059 -0.08155 -3.5005E-05 -0.03266 -1.4019E-05 -0.11421 -4.9024E-05 429.2492627281849 62.326 0.59658 59.365 59.009 59.606 -2.9614 -0.096747 7.1609E-05 NaN 6.2058 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3392800 34966 341 23533 23548 0.05007647859304143 PVCLAQVK 8 Unmodified _PVCLAQVK_ 0 0 0 BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant;BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 429.249306 856.484059 -0.011443 -4.9117E-06 -0.17201 -7.3837E-05 -0.18346 -7.8748E-05 429.249250950308 62.63 0.72808 59.391 58.966 59.694 -3.2395 -0.071178 -4.8026E-05 NaN 6.2058 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2437400 34967 341 23533 23548 0.05007647859304143 PVCRHRTPL 9 Unmodified _PVCRHRTPL_ 0 0 0 nc|ENSG00000288658|A0A7I2V3R4|RNF228 nc|ENSG00000288658|A0A7I2V3R4|RNF228 nc|ENSG00000288658|A0A7I2V3R4|RNF228 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016906738281 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 123.46 1 123.46 122.96 123.96 0 0 0 0 0.23508 1 24336 24336 8.1555 4.5685 1 34968 12655 23534 23549 34349 34349 0.050877336507710424 PVCRKFMQDVS 11 Unmodified _PVCRKFMQDVS_ 0 0 0 ENST00000589318.5_1_19:14520811-14524032:-|nuORF;ENST00000592391.5_1_19:14520811-14521407:-|nuORF;ENST00000587730.5_1_19:14520811-14521537:-|nuORF ENST00000589318.5_1_19:14520811-14524032:-|nuORF ENST00000589318.5_1_19:14520811-14524032:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.216796875 3 437.217897 1308.63186 NaN NaN NaN NaN NaN NaN NaN 97.159 1 92.924 92.424 93.424 -4.2348 0 0 0 0.23103 1 18555 18555 7.4771 1.6936 1 34969 11587 23535 23550 34350 34350 -0.010108286689956003 PVCYFTQRE 9 Unmodified _PVCYFTQRE_ 0 0 0 REV__ENST00000466047.5_1_10:121609046-121633060:-|nuORF REV__ENST00000466047.5_1_10:121609046-121633060:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2066955566406 3 381.51482 1141.52263 -0.31526 -0.00012028 0.68008 0.00025946 0.36481 0.00013918 381.5149600731966 28.688 0.27973 26.692 26.484 26.763 -1.9962 9 7 2 0 0 0 0.87262 1 4859 4859 5.2969 0 1 216500 + 34970 19362 23536 23551 34351 34351 -0.042470912968383345 PVDKPQVQ 8 Unmodified _PVDKPQVQ_ 0 0 0 REV__ENSG00000166428|ENST00000392593|PLD4 REV__ENSG00000166428|ENST00000392593|PLD4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.1745910644531 3 304.17127 909.491981 -0.79679 -0.00024236 0.87254 0.0002654 0.075755 2.3043E-05 304.1714725828184 62.043 0.68043 62.043 61.631 62.312 0 51 19 4 0 0 0 8448 1 11900 11900 10.074 3.8681 1 7961900 + 34971 17847 23537 23552 34352 34352 0.03361498380422745 PVDKPQVQ 8 Unmodified _PVDKPQVQ_ 0 0 0 REV__ENSG00000166428|ENST00000392593|PLD4 REV__ENSG00000166428|ENST00000392593|PLD4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 304.17127 909.491981 -0.79679 -0.00024236 0.87254 0.0002654 0.075755 2.3043E-05 304.1714725828184 62.043 0.68043 62.043 61.631 62.312 0 0 0 NaN 10.074 51 19 4 NaN NaN NaN NaN 0 NaN NaN 0 7961900 + 34972 17847 23537 23552 0.03361498380422745 PVDQRFPG 8 Unmodified _PVDQRFPG_ 0 0 0 REV__ENSG00000116117|ENST00000406610|PARD3B REV__ENSG00000116117|ENST00000406610|PARD3B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23876953125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 102.61 1 98.589 98.089 99.089 -4.0212 0 0 0 0.21452 1 19723 19723 13.508 1.8676 1 + 34973 15468 23538 23553 34353 34353 0.0003634506618936939 PVDRTPIPSP 10 Unmodified _PVDRTPIPSP_ 0 0 0 GGA3|p.L156P|1|0.37|ENSG00000125447|chr17:75243124-75243124|A/G|missense_variant GGA3|p.L156P|1|0.37|ENSG00000125447|chr17:75243124-75243124|A/G|missense_variant GGA3|p.L156P|1|0.37|ENSG00000125447|chr17:75243124-75243124|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 111.59 1 107.16 106.66 107.66 -4.4231 0 0 0 0.22588 1 21988 21988 6.6304 0 1 34974 11847 23539 23554 34354 34354 0.0461712798901317 PVDRTPIPSP 10 Unmodified _PVDRTPIPSP_ 0 0 0 GGA3|p.L156P|1|0.37|ENSG00000125447|chr17:75243124-75243124|A/G|missense_variant GGA3|p.L156P|1|0.37|ENSG00000125447|chr17:75243124-75243124|A/G|missense_variant GGA3|p.L156P|1|0.37|ENSG00000125447|chr17:75243124-75243124|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 111.74 1 107.25 106.75 107.75 -4.4915 0 0 0 0.22588 1 21449 21449 5.7834 0.38072 1 34975 11847 23539 23554 34355 34355 0.0461712798901317 PVDSLESPHTY 11 Unmodified _PVDSLESPHTY_ 0 0 0 NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant;ENSG00000134250|ENST00000256646|NOTCH2 NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.75830078125 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 99.969 1 95.979 95.479 96.479 -3.9895 0 0 0 0.22943 1 19200 19200 8.7454 1.4562 1 34976 3836 23540 23555 34356 34356 -0.03996104807015399 PVDWNNDYCS 10 Unmodified _PVDWNNDYCS_ 0 0 0 ENSG00000198846|ENST00000361421|TOX;CHD7-TOX|1|fusion ENSG00000198846|ENST00000361421|TOX ENSG00000198846|ENST00000361421|TOX MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 303.96575927734375 4 303.871111 1211.45534 -2.2944 -0.0006972 0.34955 0.00010622 -1.9449 -0.00059098 304.12245815680876 13.77 0.13264 12.559 12.443 12.576 -1.2106 5 3 2 0 0 0 0.91149 1 1754 1754 0 0 1 94273 34977 518 23541 23556 34357 34357 -0.14193166298468896 PVDYGPAAAT 10 Unmodified _PVDYGPAAAT_ 0 0 0 REV__nc|ENSG00000213347|Q9BW11-4|MXD3 REV__nc|ENSG00000213347|Q9BW11-4|MXD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2332458496094 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 36.254 1 33.977 33.477 34.477 -2.2766 0 0 0 0.17827 1 6392 6392 32.305 10.769 1 + 34978 24263 23542 23557 34358 34358 -0.02654798236142142 PVDYQERHRKR 11 Unmodified _PVDYQERHRKR_ 0 0 0 REV__ENSG00000205277|ENST00000536621|MUC12 REV__ENSG00000205277|ENST00000536621|MUC12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3956909179688 2 742.397473 1482.78039 NaN NaN NaN NaN NaN NaN NaN 156.89 1 151.61 151.11 152.11 -5.2854 0 0 0 0.22632 1 30442 30442 0.00056442 0 1 + 34979 19584 23543 23558 34359 34359 0.0583136162053961 PVERFRRPFG 10 Unmodified _PVERFRRPFG_ 0 0 0 REV__ENSG00000144724|ENST00000474889|PTPRG REV__ENSG00000144724|ENST00000474889|PTPRG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7615966796875 2 630.851638 1259.68872 NaN NaN NaN NaN NaN NaN NaN 159.58 1 159.58 159.08 160.08 0 0 0 0 0.22588 1 32043 32043 9.3831 1.7742 1 + 34980 16797 23544 23559 34360 34360 0.06926722994035117 PVERSAFPVH 10 Unmodified _PVERSAFPVH_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20745849609375 3 380.204974 1137.59309 -0.21503 -8.1756E-05 0.02762 1.0501E-05 -0.18741 -7.1255E-05 380.2049520905584 65.295 0.64081 62.248 61.937 62.578 -3.047 50 18 4 0 0 0 0.72179 1 12644 12644 8.9762 0.53194 1 8045000 34981 7627 23545 23560 34361 34361 0.029799500831359182 PVERSAFPVH 10 Unmodified _PVERSAFPVH_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 380.204974 1137.59309 -0.4493 -0.00017083 0.077537 2.948E-05 -0.37176 -0.00014135 380.20501759566247 62.387 0.62137 62.387 62.073 62.694 0 0.089108 0.00010372 NaN 8.9762 43 17 3 NaN NaN NaN NaN 0 NaN NaN 0 6886500 34982 7627 23545 23560 0.029799500831359182 PVERSAFPVH 10 Unmodified _PVERSAFPVH_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.204974 1137.59309 0.24254 9.2216E-05 -0.52165 -0.00019834 -0.27911 -0.00010612 380.20474654164605 65.74 0.6032 62.282 62.029 62.632 -3.4581 -0.016266 -0.00057973 NaN 8.9762 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4093200 34983 7627 23545 23560 0.029799500831359182 PVERSAFPVH 10 Unmodified _PVERSAFPVH_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 380.204974 1137.59309 -0.3709 -0.00014102 0.24019 9.1321E-05 -0.13072 -4.9699E-05 380.20503840868224 65.558 0.82448 62.275 61.86 62.684 -3.2832 -0.023199 0.00028924 NaN 8.9762 50 23 3 NaN NaN NaN NaN 0 NaN NaN 0 6801000 34984 7627 23545 23560 0.029799500831359182 PVEVDHDQLEQ 11 Unmodified _PVEVDHDQLEQ_ 0 0 0 ENSG00000169239|ENST00000318636|CA5B ENSG00000169239|ENST00000318636|CA5B ENSG00000169239|ENST00000318636|CA5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.224853515625 3 436.87373 1307.59936 0.47384 0.00020701 0.078883 3.4462E-05 0.55273 0.00024147 436.87382093202683 22.226 0.65491 20.752 20.557 21.211 -1.4742 50 18 4 0 0 0 0.72919 1 3844 3844 9.7643 2.7272 1 16755000 34985 5973 23546 23561 34362 34362 -0.042136212666719075 PVFFQHLH 8 Unmodified _PVFFQHLH_ 0 0 0 REV__nc|ENSG00000160781|Q6TCH4-3|PAQR6 REV__nc|ENSG00000160781|Q6TCH4-3|PAQR6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.21282958984375 3 342.183622 1023.52904 0.1295 4.4313E-05 -0.58398 -0.00019983 -0.45448 -0.00015552 342.1835944905192 62.169 0.14497 58.799 58.671 58.816 -3.3694 5 3 2 0 0 0 1.0231 1 11588 11588 4.3292 0 1 315390 + 34986 17434 23547 23562 34363 34363 0.018212147168583215 PVFKVWGV 8 Unmodified _PVFKVWGV_ 0 0 0 REV__ENST00000566056.1_1_16:30959736-30965162:+|nuORF REV__ENST00000566056.1_1_16:30959736-30965162:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.23358154296875 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 108.1 1 108.1 107.6 108.6 0 0 0 0 0.21486 1 21257 21257 0.45834 0 1 + 34987 18494 23548 23563 34364 34364 0.06467884490712095 PVFKVWGV 8 Unmodified _PVFKVWGV_ 0 0 0 REV__ENST00000566056.1_1_16:30959736-30965162:+|nuORF REV__ENST00000566056.1_1_16:30959736-30965162:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1852722167969 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 99.922 1 95.778 95.278 96.278 -4.1433 0 0 0 0.21486 1 19634 19634 0.45834 0 1 + 34988 18494 23548 23563 34365 34365 0.06467884490712095 PVFKVWGV 8 Unmodified _PVFKVWGV_ 0 0 0 REV__ENST00000566056.1_1_16:30959736-30965162:+|nuORF REV__ENST00000566056.1_1_16:30959736-30965162:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.1756286621094 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 102.79 1 98.769 98.269 99.269 -4.0212 0 0 0 0.21486 1 19759 19759 0.45834 0 1 + 34989 18494 23548 23563 34366 34366 0.06467884490712095 PVFLELHNEY 10 Unmodified _PVFLELHNEY_ 0 0 0 REV__ENST00000485659.1_1_10:13240798-13246428:+|nuORF REV__ENST00000485659.1_1_10:13240798-13246428:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7516479492188 2 630.816596 1259.61864 0.39355 0.00024826 0.11707 7.3852E-05 0.51062 0.00032211 630.8156662213062 155.23 0.2128 149.95 149.86 150.07 -5.2854 6 5 2 0 0 0 0.91046 1 30109 30109 0.45834 0 1 1522900 + 34990 22224 23549 23564 34367 34367 -0.0007862018508149049 PVFLKLACA 9 Unmodified _PVFLKLACA_ 0 0 0 OR2Y1|p.Y277Ifs*3|2|0.4|ENSG00000174339|chr5:180739230-180739230|A/-|frameshift_variant;ENSG00000174339|ENST00000307832|OR2Y1 OR2Y1|p.Y277Ifs*3|2|0.4|ENSG00000174339|chr5:180739230-180739230|A/-|frameshift_variant OR2Y1|p.Y277Ifs*3|2|0.4|ENSG00000174339|chr5:180739230-180739230|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 321.19091796875 3 321.189496 960.546659 NaN NaN NaN NaN NaN NaN NaN 5.793 1 4.753 4.253 5.253 -1.04 0 0 0 0.23508 1 329 329 0.26902 0 1 34991 6344 23550 23565 34368 34368 0.06480793927471495 PVFSMIFAL 9 Unmodified _PVFSMIFAL_ 0 0 0 REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.02191162109375 3 342.189385 1023.54633 0.21245 7.2698E-05 0.3134 0.00010724 0.52585 0.00017994 342.18946720812215 33.914 1.0048 31.767 31.149 32.154 -2.1468 44 28 2 0 0 0 0.81221 1 5827 5827 1.1933 0 1 765770 + 34992 25138 23551 23566 34369 34369 0.035493742076482704 PVFSMIFAL 9 Unmodified _PVFSMIFAL_ 0 0 0 REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 342.189385 1023.54633 -0.34395 -0.0001177 0.13506 4.6215E-05 -0.20889 -7.1481E-05 342.18939539992095 31.746 0.58891 31.746 31.458 32.047 0 -0.024136 -0.00021974 NaN 1.1933 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 920080 + 34993 25138 23551 23566 0.035493742076482704 PVFSMIFAL 9 Unmodified _PVFSMIFAL_ 0 0 0 REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 342.189385 1023.54633 -0.36811 -0.00012596 0.12611 4.3152E-05 -0.24201 -8.2812E-05 342.1894555700836 34.058 0.83066 31.74 31.324 32.155 -2.3175 -0.030074 -0.00022893 NaN 1.1933 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 732040 + 34994 25138 23551 23566 0.035493742076482704 PVFSMIFAL 9 Unmodified _PVFSMIFAL_ 0 0 0 REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 342.189385 1023.54633 0.21245 7.2698E-05 0.3134 0.00010724 0.52585 0.00017994 342.18946720812215 33.914 1.0048 31.767 31.149 32.154 -2.1468 -0.0035807 -3.6657E-05 NaN 1.1933 44 28 2 NaN NaN NaN NaN 0 NaN NaN 0 765770 + 34995 25138 23551 23566 0.035493742076482704 PVFSMIFAL 9 Unmodified _PVFSMIFAL_ 0 0 0 REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.189385 1023.54633 -0.30081 -0.00010294 1.1238 0.00038455 0.82298 0.00028161 342.1898681467127 34.044 1.0775 31.828 31.044 32.122 -2.2158 0.057791 0.00079526 NaN 1.1933 42 30 2 NaN NaN NaN NaN 0 NaN NaN 0 649510 + 34996 25138 23551 23566 0.035493742076482704 PVFTIYLGP 9 Unmodified _PVFTIYLGP_ 0 0 0 ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1 ENSG00000167600|ENST00000310054|CYP2S1 ENSG00000167600|ENST00000310054|CYP2S1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.0533752441406 3 336.191783 1005.55352 -0.34725 -0.00011674 -0.21968 -7.3856E-05 -0.56694 -0.0001906 336.19164004714327 27.36 0.48155 27.36 27.115 27.597 0 18 13 2 0 0 0 0.884 1 4796 4796 0 0 1 582660 34997 5820 23552 23567 34370 34370 0.05096430079720449 PVFVGHKPG 9 Unmodified _PVFVGHKPG_ 0 0 0 SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant;SEMA6A|p.R918Efs*23|1|0.25|ENSG00000092421|chr5:116446955-116446956|-/T|frameshift_variant;SEMA6A|p.N990Mfs*8|1|0.1|ENSG00000092421|chr5:116446737-116446738|-/GTACA|frameshift_variant;SEMA6A|p.K1013Nfs*11|1|0.19|ENSG00000092421|chr5:116446670-116446670|G/-|frameshift_variant;SEMA6A|p.K1013Qfs*15|1|0.45|ENSG00000092421|chr5:116446669-116446670|-/G|frameshift_variant;ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.12200927734375 3 313.179989 936.518136 NaN NaN NaN NaN NaN NaN NaN 43.119 1 43.119 42.619 43.619 0 0 0 0 0.1964 1 8076 8076 0.073264 0 1 34998 1834 23553 23568 34371 34371 0.04733812342578858 PVGFGSVGGRR 11 Unmodified _PVGFGSVGGRR_ 0 0 0 REV__nc|ENSG00000136986|Q9BUN8-2|DERL1 REV__nc|ENSG00000136986|Q9BUN8-2|DERL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 544.800537109375 2 544.801614 1087.58868 NaN NaN NaN NaN NaN NaN NaN 162.99 1 157.85 157.35 158.35 -5.1438 0 0 0 0.224 1 31695 31695 13.042 2.2185 1 + 34999 16368 23554 23569 34372 34372 0.04838485660229708 PVGFRATAT 9 Unmodified _PVGFRATAT_ 0 0 0 REV__HSPB8|p.P89Hfs*12|1|0.47|ENSG00000152137|chr12:119179572-119179572|C/-|frameshift_variant REV__HSPB8|p.P89Hfs*12|1|0.47|ENSG00000152137|chr12:119179572-119179572|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2354431152344 2 460.253434 918.492316 -0.029085 -1.3387E-05 0.39925 0.00018375 0.37016 0.00017037 460.25360034788866 78.654 0.87013 74.978 74.606 75.476 -3.676 33 24 2 0 0 0 0.79204 1 15049 15049 11.64 0 1 1265300 + 35000 17096 23555 23570 34373 34373 0.029809181002860896 PVGKIHPY 8 Unmodified _PVGKIHPY_ 0 0 0 nc|ENSG00000214216|Q1A5X6-3|IQCJ;nc|ENSG00000214216|Q1A5X6|IQCJ nc|ENSG00000214216|Q1A5X6-3|IQCJ nc|ENSG00000214216|Q1A5X6-3|IQCJ MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.17547607421875 3 304.176356 909.507237 NaN NaN NaN NaN NaN NaN NaN 66.596 1 66.596 66.096 67.096 0 0 0 0 0.21486 1 12867 12867 0.45834 0 1 35001 12593 23556 23571 34374 34374 0.048864099682646156 PVGNIVSFE 9 Unmodified _PVGNIVSFE_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN;VCAN|p.E2431Rfs*10|1|0.16|ENSG00000038427|chr5:83540290-83540291|-/G|frameshift_variant nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2520751953125 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 163.37 1 158.58 158.08 159.08 -4.7898 0 0 0 0.23508 1 32565 32565 12.532 0 1 35002 1183 23557 23572 34375 34375 0.00982078660570096 PVGYFYHFG 9 Unmodified _PVGYFYHFG_ 0 0 0 REV__ENSG00000205667|ENST00000381130|ARSH REV__ENSG00000205667|ENST00000381130|ARSH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7732543945312 2 543.75581 1085.49707 NaN NaN NaN NaN NaN NaN NaN 163.84 1 158.8 158.3 159.3 -5.0446 0 0 0 0.23508 1 31908 31908 5.2307 0 1 + 35003 19597 23558 23573 34376 34376 -0.04226197756975125 PVHLPFVPG 9 Unmodified _PVHLPFVPG_ 0 0 0 REV__ENST00000586061.1_1_19:783197-784896:+|nuORF REV__ENST00000586061.1_1_19:783197-784896:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7776794433594 2 481.776545 961.538538 NaN NaN NaN NaN NaN NaN NaN 52.686 1 52.686 52.186 53.186 0 0 0 0 0.1966 1 10018 10018 0.073264 0.043981 1 + 35004 23260 23559 23574 34377 34377 0.05622983002388082 PVHPIYFK 8 Unmodified _PVHPIYFK_ 0 0 0 REV__ENSG00000120341|ENST00000308284|SEC16B REV__ENSG00000120341|ENST00000308284|SEC16B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.2017822265625 3 334.192006 999.554188 NaN NaN NaN NaN NaN NaN NaN 58.308 1 58.308 57.808 58.808 0 0 0 0 0.21486 1 11155 11155 0.45834 0 1 + 35005 15620 23560 23575 34378 34378 0.05439269519422396 PVHRGNFC 8 Unmodified _PVHRGNFC_ 0 0 0 REV__ENSG00000117877|ENST00000309424|POLR1G REV__ENSG00000117877|ENST00000309424|POLR1G MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24432373046875 2 465.224154 928.433755 NaN NaN NaN NaN NaN NaN NaN 161.08 1 155.85 155.35 156.35 -5.2299 0 0 0 0.23294 1 31281 31281 0.12286 0.049601 1 + 35006 15533 23561 23576 34379 34379 -0.03332461745844739 PVIAKILKLF 10 Unmodified _PVIAKILKLF_ 0 0 0 REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.20745849609375 3 381.261761 1140.76345 NaN NaN NaN NaN NaN NaN NaN 178.99 1 178.99 178.49 179.49 0 0 0 0 0.22588 1 37077 37077 0.15932 0.15932 1 + 35007 25379 23562 23577 34380 34380 0.1987009275269429 PVIAKILKLF 10 Unmodified _PVIAKILKLF_ 0 0 0 REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2115173339844 3 381.261761 1140.76345 NaN NaN NaN NaN NaN NaN NaN 8.0574 1 6.9929 6.4929 7.4929 -1.0645 0 0 0 2.8426 1 758 758 0 0 1 + 35008 25379 23562 23577 34381 34381 0.1987009275269429 PVIAKILKLF 10 Unmodified _PVIAKILKLF_ 0 0 0 REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2115173339844 3 381.261761 1140.76345 NaN NaN NaN NaN NaN NaN NaN 8.069 1 7.0046 6.5046 7.5046 -1.0645 0 0 0 0.22588 1 759 759 0.15932 0.15932 1 + 35009 25379 23562 23577 34382 34382 0.1987009275269429 PVIAKILKLF 10 Unmodified _PVIAKILKLF_ 0 0 0 REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2171936035156 3 381.261761 1140.76345 NaN NaN NaN NaN NaN NaN NaN 15.973 1 14.751 14.251 15.251 -1.2219 0 0 0 2.8426 1 2273 2273 0 0 1 + 35010 25379 23562 23577 34383 34383 0.1987009275269429 PVIAKILKLF 10 Unmodified _PVIAKILKLF_ 0 0 0 REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2189636230469 3 381.261761 1140.76345 NaN NaN NaN NaN NaN NaN NaN 34.789 1 32.536 32.036 33.036 -2.2527 0 0 0 2.8426 1 6110 6110 0 0 1 + 35011 25379 23562 23577 34384 34384 0.1987009275269429 PVIAKILKLF 10 Unmodified _PVIAKILKLF_ 0 0 0 REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 REV__tr|U7T3X0|U7T3X0_FUSNUEnoylreductase(ER)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00645PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.216064453125 3 381.261761 1140.76345 NaN NaN NaN NaN NaN NaN NaN 14.102 1 12.891 12.391 13.391 -1.2106 0 0 0 2.8426 1 1842 1842 0 0 1 + 35012 25379 23562 23577 34385 34385 0.1987009275269429 PVIDIWGE 8 Unmodified _PVIDIWGE_ 0 0 0 tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1 tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1 tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.164306640625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 175.32 1 170.43 169.93 170.93 -4.8845 0 0 0 0.21486 1 34866 34866 0.45834 0 1 35013 26415 23563 23578 34386 34386 0.003546936318684857 PVIKKKLV 8 Unmodified _PVIKKKLV_ 0 0 0 PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant;ENSG00000225190|ENST00000430334|PLEKHM1;ENST00000586562.5_1_17:43553294-43559850:-|nuORF;ENST00000578036.5_1_17:62801160-62825332:-|nuORF;ENST00000584585.1_1_17:62817020-62825332:-|nuORF;ENST00000580919.5_1_17:62811233-62825332:-|nuORF;ENST00000397718.8_1_17:62816508-62825332:-|nuORF PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.7301330566406 3 308.891668 923.653173 NaN NaN NaN NaN NaN NaN NaN 21.566 1 21.566 21.066 22.066 0 0 0 0 0.2396 1 3614 3614 0.12286 0 1 35014 7785 23564 23579 34387 34387 0.18829292484326743 PVIKLKVR 8 Unmodified _PVIKLKVR_ 0 0 0 REV__ENSG00000136813|ENST00000684092|ECPAS REV__ENSG00000136813|ENST00000684092|ECPAS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.22625732421875 3 318.22705 951.659321 NaN NaN NaN NaN NaN NaN NaN 77.335 1 77.335 76.835 77.835 0 0 0 0 0.21486 1 15035 15035 3.5965 0 1 + 35015 16349 23565 23580 34388 34388 0.1815581071584802 PVIKNEKPP 9 Unmodified _PVIKNEKPP_ 0 0 0 REV__MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant REV__MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.24346923828125 3 341.206203 1020.59678 NaN NaN NaN NaN NaN NaN NaN 106.84 1 102.57 102.07 103.07 -4.2638 0 0 0 0.23508 1 21031 21031 1.1933 0.735 1 + 35016 14071 23566 23581 34389 34389 0.08730619856987687 PVIMPPEV 8 Unmodified _PVIMPPEV_ 0 0 0 ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 441.24530029296875 2 441.243689 880.472826 NaN NaN NaN NaN NaN NaN NaN 122.27 1 117.72 117.22 118.22 -4.5476 0 0 0 0.21452 1 24103 24103 13.508 3.3245 1 35017 4134 23567 23582 34390 34390 0.027808257651599888 PVIMPPEV 8 Unmodified _PVIMPPEV_ 0 0 0 ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 441.2541198730469 2 441.243689 880.472826 NaN NaN NaN NaN NaN NaN NaN 122.43 1 117.88 117.38 118.38 -4.5476 0 0 0 0.2074 1 24134 24134 19.439 3.6708 1 35018 4134 23567 23582 34391 34391 0.027808257651599888 PVIMPPEV 8 Unmodified _PVIMPPEV_ 0 0 0 ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 441.2466125488281 2 441.243689 880.472826 NaN NaN NaN NaN NaN NaN NaN 134.04 1 129.17 128.67 129.67 -4.8726 0 0 0 0.21486 1 25753 25753 10.183 4.423 1 35019 4134 23567 23582 34392 34392 0.027808257651599888 PVIRQRLKAY 10 Unmodified _PVIRQRLKAY_ 0 0 0 nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6 nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7631225585938 2 622.385314 1242.75608 NaN NaN NaN NaN NaN NaN NaN 76.373 1 72.65 72.15 73.15 -3.7227 0 0 0 2.8426 1 14459 14459 0.043787 0.042406 1 35020 2978 23568 23583 34393 34393 0.14440753204985413 PVITGNRDG 9 Unmodified _PVITGNRDG_ 0 0 0 nc|ENSG00000040933|Q96PE3-2|INPP4A;nc|ENSG00000040933|Q96PE3-4|INPP4A;ENSG00000040933|ENST00000409851|INPP4A;nc|ENSG00000040933|Q96PE3|INPP4A nc|ENSG00000040933|Q96PE3-2|INPP4A nc|ENSG00000040933|Q96PE3-2|INPP4A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16473388671875 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 114.34 1 109.87 109.37 110.37 -4.4726 0 0 0 0.1964 1 22534 22534 0.0033805 0 1 35021 1194 23569 23584 34394 34394 0.010754262322848263 PVKKLFTV 8 Unmodified _PVKKLFTV_ 0 0 0 REV__MPI|p.V342Cfs*17|1|0.22|ENSG00000178802|chr15:74897182-74897183|-/C|frameshift_variant REV__MPI|p.V342Cfs*17|1|0.22|ENSG00000178802|chr15:74897182-74897183|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2325439453125 3 311.204023 930.590239 NaN NaN NaN NaN NaN NaN NaN 122.93 1 118.35 117.85 118.85 -4.5757 0 0 0 0.21486 1 24236 24236 0.40072 0 1 + 35022 18622 23570 23585 34395 34395 0.122167266962947 PVKKLVEKR 9 Unmodified _PVKKLVEKR_ 0 0 0 REV__PPL|p.Q990Rfs*31|1|0.12|ENSG00000118898|chr16:4885688-4885688|C/-|frameshift_variant REV__PPL|p.Q990Rfs*31|1|0.12|ENSG00000118898|chr16:4885688-4885688|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 549.1151733398438 2 548.863683 1095.71281 NaN NaN NaN NaN NaN NaN NaN 167.24 1 162.29 161.79 162.79 -4.948 0 0 0 0.23508 1 32879 32879 4.3292 0 1 + 35023 15565 23571 23586 34396 34396 0.16878563427712834 PVKLKGSKKL 10 Unmodified _PVKLKGSKKL_ 0 0 0 REV__ENSG00000105372|ENST00000598742|RPS19 REV__ENSG00000105372|ENST00000598742|RPS19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 549.4132080078125 2 549.373884 1096.73321 NaN NaN NaN NaN NaN NaN NaN 176.42 1 171.63 171.13 172.13 -4.7898 0 0 0 0.22588 1 36074 36074 0.35063 0 1 + 35024 14983 23572 23587 34397 34397 0.18871734087520053 PVKLLPLLL 9 Unmodified _PVKLLPLLL_ 0 0 0 REV__nc|ENSG00000284690|A0A0K2S4Q6|CD300H REV__nc|ENSG00000284690|A0A0K2S4Q6|CD300H MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.83734130859375 3 335.907206 1004.69979 NaN NaN NaN NaN NaN NaN NaN 25.3 1 25.3 24.8 25.8 0 0 0 0 0.19635 1 4383 4383 0 0 1 + 35025 24316 23573 23588 34398 34398 0.1976273231562118 PVKLRKLVI 9 Unmodified _PVKLRKLVI_ 0 0 0 VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2758178710938 2 533.378969 1064.74339 NaN NaN NaN NaN NaN NaN NaN 164.41 1 159.35 158.85 159.85 -5.0648 0 0 0 0.23508 1 32059 32059 2.3027 0 1 35026 3741 23574 23589 34399 34399 0.21360341812737715 PVKNILTGR 9 Unmodified _PVKNILTGR_ 0 0 0 tr|U7SZW3|U7SZW3_FUSNUCarbamoylphosphatesynthasesmallchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carAPE=3SV=1 tr|U7SZW3|U7SZW3_FUSNUCarbamoylphosphatesynthasesmallchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carAPE=3SV=1 tr|U7SZW3|U7SZW3_FUSNUCarbamoylphosphatesynthasesmallchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.2104797363281 3 333.209948 996.608014 NaN NaN NaN NaN NaN NaN NaN 94.023 1 90.032 89.532 90.532 -3.9907 0 0 0 0.23508 1 18418 18418 2.4985 0 1 35027 26305 23575 23590 34400 34400 0.1095744195114321 PVKRDGYK 8 Unmodified _PVKRDGYK_ 0 0 0 REV__DROSHA|p.H933P|1|0.07|ENSG00000113360|chr5:31449304-31449304|T/G|missense_variant REV__DROSHA|p.H933P|1|0.07|ENSG00000113360|chr5:31449304-31449304|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77398681640625 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 163.53 1 158.47 157.97 158.97 -5.0648 0 0 0 0.21452 1 31825 31825 13.508 2.684 1 + 35028 13749 23576 23591 34401 34401 0.05220893508658264 PVKRSGRY 8 Unmodified _PVKRSGRY_ 0 0 0 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7821044921875 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 17.021 1 15.749 15.249 16.249 -1.2722 0 0 0 0.2396 1 2485 2485 0.12286 0 1 35029 7634 23577 23592 34402 34402 0.06343715602804423 PVKRSGRY 8 Unmodified _PVKRSGRY_ 0 0 0 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7782287597656 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 63.252 1 59.836 59.336 60.336 -3.4158 0 0 0 0.21486 1 11813 11813 12.532 3.1484 1 35030 7634 23577 23592 34403 34403 0.06343715602804423 PVKRSGRY 8 Unmodified _PVKRSGRY_ 0 0 0 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.779296875 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 166.35 1 161.37 160.87 161.87 -4.9811 0 0 0 0.23025 1 32596 32596 0.25148 0 1 35031 7634 23577 23592 34404 34404 0.06343715602804423 PVLAVKDQLVY 11 Unmodified _PVLAVKDQLVY_ 0 0 0 REV__tr|U7SGN5|U7SGN5_FUSNUUracilphosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPE=3SV=1 REV__tr|U7SGN5|U7SGN5_FUSNUUracilphosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.772216796875 2 622.866089 1243.71762 NaN NaN NaN NaN NaN NaN NaN 110.37 1 110.37 109.87 110.87 0 0 0 0 0.23324 1 21706 21706 5.7319 0 1 + 35032 24878 23578 23593 34405 34405 0.10551402779788077 PVLEASVSL 9 Unmodified _PVLEASVSL_ 0 0 0 REV__nc|ENSG00000185483|Q01973-3|ROR1 REV__nc|ENSG00000185483|Q01973-3|ROR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.238525390625 2 457.7633 913.512048 -0.15715 -7.1937E-05 0.3676 0.00016827 0.21045 9.6338E-05 457.7634167488141 108.34 0.54246 103.92 103.65 104.19 -4.4121 25 15 2 0 0 0 0.11447 1 20804 20804 50.855 4.8341 1 1088800 + 35033 18971 23579 23594 34406 34406 0.05183249320384675 PVLEASVSL 9 Unmodified _PVLEASVSL_ 0 0 0 REV__nc|ENSG00000185483|Q01973-3|ROR1 REV__nc|ENSG00000185483|Q01973-3|ROR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 457.7633 913.512048 0.60387 0.00027643 -0.13845 -6.338E-05 0.46541 0.00021305 457.7630967238575 104.02 0.49144 104.02 103.65 104.14 0 0.10167 -0.00047775 NaN 50.855 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1293600 + 35034 18971 23579 23594 0.05183249320384675 PVLEASVSL 9 Unmodified _PVLEASVSL_ 0 0 0 REV__nc|ENSG00000185483|Q01973-3|ROR1 REV__nc|ENSG00000185483|Q01973-3|ROR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 457.7633 913.512048 -0.15715 -7.1937E-05 0.3676 0.00016827 0.21045 9.6338E-05 457.7634167488141 108.34 0.54246 103.92 103.65 104.19 -4.4121 0.0057817 -1.4444E-05 NaN 50.855 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1088800 + 35035 18971 23579 23594 0.05183249320384675 PVLIIHGT 8 Unmodified _PVLIIHGT_ 0 0 0 ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B;ENSG00000129968|ENST00000292577|ABHD17A;nc|ENSG00000129968|Q96GS6-2|ABHD17A ENSG00000107362|ENST00000333421|ABHD17B ENSG00000107362|ENST00000333421|ABHD17B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2542419433594 2 425.263271 848.511988 NaN NaN NaN NaN NaN NaN NaN 121.88 1 117.35 116.85 117.85 -4.5305 0 0 0 0.21486 1 23466 23466 5.7604 0 1 35036 2421 23580 23595 34407 34407 0.08167294111046886 PVLITAVVLI 10 Unmodified _PVLITAVVLI_ 0 0 0 DROSHA|p.P157Lfs*69|1|0.31|ENSG00000113360|chr5:31526463-31526463|G/-|frameshift_variant DROSHA|p.P157Lfs*69|1|0.31|ENSG00000113360|chr5:31526463-31526463|G/-|frameshift_variant DROSHA|p.P157Lfs*69|1|0.31|ENSG00000113360|chr5:31526463-31526463|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 518.80224609375 2 519.352086 1036.68962 0.04525 2.3501E-05 0.015043 7.8127E-06 0.060293 3.1313E-05 519.3520131252926 171.83 0.24466 167.04 166.91 167.16 -4.7898 20 6 4 0 0 0 0.80822 1 34950 34950 23.148 0 1 115780000 35037 890 23581 23596 34408 34408 0.1727412459038078 PVLITAVVLI 10 Unmodified _PVLITAVVLI_ 0 0 0 DROSHA|p.P157Lfs*69|1|0.31|ENSG00000113360|chr5:31526463-31526463|G/-|frameshift_variant DROSHA|p.P157Lfs*69|1|0.31|ENSG00000113360|chr5:31526463-31526463|G/-|frameshift_variant DROSHA|p.P157Lfs*69|1|0.31|ENSG00000113360|chr5:31526463-31526463|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 519.352086 1036.68962 -0.47284 -0.00024557 0.60329 0.00031332 0.13045 6.775E-05 519.3523657038156 172.07 0.27545 167.17 167.02 167.29 -4.8977 0.064651 0.0004746 NaN 23.148 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 55512000 35038 890 23581 23596 0.1727412459038078 PVLITAVVLI 10 Unmodified _PVLITAVVLI_ 0 0 0 DROSHA|p.P157Lfs*69|1|0.31|ENSG00000113360|chr5:31526463-31526463|G/-|frameshift_variant DROSHA|p.P157Lfs*69|1|0.31|ENSG00000113360|chr5:31526463-31526463|G/-|frameshift_variant DROSHA|p.P157Lfs*69|1|0.31|ENSG00000113360|chr5:31526463-31526463|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 519.352086 1036.68962 0.55111 0.00028622 -0.16727 -8.6872E-05 0.38384 0.00019935 519.3518904858166 171.99 0.31602 167.11 166.93 167.25 -4.873 0.003175 -0.00032578 NaN 23.148 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 55785000 35039 890 23581 23596 0.1727412459038078 PVLKFVRNVP 10 Unmodified _PVLKFVRNVP_ 0 0 0 nc|ENSG00000012061|P07992-3|ERCC1;ENST00000588300.1_1_19:45920077-45926632:-|nuORF;ENST00000592905.5_1_19:45918043-45926632:-|nuORF;nc|ENSG00000012061|P07992-2|ERCC1;ENSG00000012061|ENST00000300853|ERCC1;nc|ENSG00000012061|P07992-4|ERCC1 nc|ENSG00000012061|P07992-3|ERCC1 nc|ENSG00000012061|P07992-3|ERCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 584.7919311523438 2 584.863683 1167.71281 NaN NaN NaN NaN NaN NaN NaN 166.07 1 161.12 160.62 161.62 -4.9484 0 0 0 2.8426 1 32503 32503 0.26539 0 1 35040 12208 23582 23597 34409 34409 0.1356656342768474 PVLPLVPPP 9 Unmodified _PVLPLVPPP_ 0 0 0 nc|ENSG00000175727|Q9HAP2-2|MLXIP;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant nc|ENSG00000175727|Q9HAP2-2|MLXIP nc|ENSG00000175727|Q9HAP2-2|MLXIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1654357910156 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 16.915 1 15.699 15.199 16.199 -1.2159 0 0 0 0.23508 1 2687 2687 2.9952 0 1 35041 6430 23583 23598 34410 34410 0.11265324321982462 PVLPLVPPP 9 Unmodified _PVLPLVPPP_ 0 0 0 nc|ENSG00000175727|Q9HAP2-2|MLXIP;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant nc|ENSG00000175727|Q9HAP2-2|MLXIP nc|ENSG00000175727|Q9HAP2-2|MLXIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.158935546875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 57.243 1 54.349 53.849 54.849 -2.8944 0 0 0 0.23508 1 10984 10984 2.9952 0 1 35042 6430 23583 23598 34411 34411 0.11265324321982462 PVLPLVPPP 9 Unmodified _PVLPLVPPP_ 0 0 0 nc|ENSG00000175727|Q9HAP2-2|MLXIP;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant nc|ENSG00000175727|Q9HAP2-2|MLXIP nc|ENSG00000175727|Q9HAP2-2|MLXIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1645202636719 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 57.285 1 54.391 53.891 54.891 -2.8944 0 0 0 0.23508 1 10993 10993 2.9952 0 1 35043 6430 23583 23598 34412 34412 0.11265324321982462 PVLPLVPPP 9 Unmodified _PVLPLVPPP_ 0 0 0 nc|ENSG00000175727|Q9HAP2-2|MLXIP;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant nc|ENSG00000175727|Q9HAP2-2|MLXIP nc|ENSG00000175727|Q9HAP2-2|MLXIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 61.049 1 58.116 57.616 58.616 -2.9333 0 0 0 0.1964 1 11759 11759 0.40827 0 1 35044 6430 23583 23598 34413 34413 0.11265324321982462 PVLPLVPPP 9 Unmodified _PVLPLVPPP_ 0 0 0 nc|ENSG00000175727|Q9HAP2-2|MLXIP;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant nc|ENSG00000175727|Q9HAP2-2|MLXIP nc|ENSG00000175727|Q9HAP2-2|MLXIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2007141113281 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 62.679 1 59.718 59.218 60.218 -2.9614 0 0 0 0.23508 1 12097 12097 1.1933 0 1 35045 6430 23583 23598 34414 34414 0.11265324321982462 PVLPLVPPP 9 Unmodified _PVLPLVPPP_ 0 0 0 nc|ENSG00000175727|Q9HAP2-2|MLXIP;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant nc|ENSG00000175727|Q9HAP2-2|MLXIP nc|ENSG00000175727|Q9HAP2-2|MLXIP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.23065185546875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 31.091 1 29.065 28.565 29.565 -2.0264 0 0 0 0.23508 1 5355 5355 1.1933 0 1 35046 6430 23583 23598 34415 34415 0.11265324321982462 PVLPLVPPP 9 Unmodified _PVLPLVPPP_ 0 0 0 nc|ENSG00000175727|Q9HAP2-2|MLXIP;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant nc|ENSG00000175727|Q9HAP2-2|MLXIP nc|ENSG00000175727|Q9HAP2-2|MLXIP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1724548339844 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 31.165 1 29.138 28.638 29.638 -2.0264 0 0 0 0.23508 1 5370 5370 2.9952 0 1 35047 6430 23583 23598 34416 34416 0.11265324321982462 PVLPLVPPP 9 Unmodified _PVLPLVPPP_ 0 0 0 nc|ENSG00000175727|Q9HAP2-2|MLXIP;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant nc|ENSG00000175727|Q9HAP2-2|MLXIP nc|ENSG00000175727|Q9HAP2-2|MLXIP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16473388671875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 59.89 1 56.666 56.166 57.166 -3.2237 0 0 0 0.1964 1 11195 11195 0.40827 0 1 35048 6430 23583 23598 34417 34417 0.11265324321982462 PVLPLVPPP 9 Unmodified _PVLPLVPPP_ 0 0 0 nc|ENSG00000175727|Q9HAP2-2|MLXIP;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant nc|ENSG00000175727|Q9HAP2-2|MLXIP nc|ENSG00000175727|Q9HAP2-2|MLXIP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.169189453125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 62.699 1 59.459 58.959 59.959 -3.2395 0 0 0 0.1964 1 11756 11756 0.40827 0 1 35049 6430 23583 23598 34418 34418 0.11265324321982462 PVLRILIR 8 Unmodified _PVLRILIR_ 0 0 0 ENST00000318037.3_1_3:196230147-196230231:-|nuORF ENST00000318037.3_1_3:196230147-196230231:-|nuORF ENST00000318037.3_1_3:196230147-196230231:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2579040527344 2 490.342387 978.67022 NaN NaN NaN NaN NaN NaN NaN 159.61 1 154.81 154.31 155.31 -4.7952 0 0 0 0.21486 1 31732 31732 2.8892 0 1 35050 8691 23584 23599 34419 34419 0.18003213090139525 PVLSPLALT 9 Unmodified _PVLSPLALT_ 0 0 0 REV__nc|ENSG00000214193|A4FU49|SH3D21 REV__nc|ENSG00000214193|A4FU49|SH3D21 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.1904296875 3 304.191783 909.553519 NaN NaN NaN NaN NaN NaN NaN 66.448 1 66.448 65.948 66.948 0 0 0 0 0.23508 1 12836 12836 1.0715 0 1 + 35051 19663 23585 23600 34420 34420 0.09512430079678325 PVLVKRAEK 9 Unmodified _PVLVKRAEK_ 0 0 0 ENSG00000186666|ENST00000333924|BCDIN3D ENSG00000186666|ENST00000333924|BCDIN3D ENSG00000186666|ENST00000333924|BCDIN3D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.2254638671875 3 347.225598 1038.65496 NaN NaN NaN NaN NaN NaN NaN 93.105 1 89.115 88.615 89.615 -3.9907 0 0 0 0.23508 1 18236 18236 0.96228 0 1 35052 7076 23586 23601 34421 34421 0.13718301502262875 PVLVLLKRRR 10 Unmodified _PVLVLLKRRR_ 0 0 0 REV__ENST00000446105.6_1_12:6761840-6762457:-|nuORF REV__ENST00000446105.6_1_12:6761840-6762457:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 417.28912353515625 3 417.290825 1248.85064 NaN NaN NaN NaN NaN NaN NaN 85.871 1 82.143 81.643 82.643 -3.7289 0 0 0 0.22588 1 16412 16412 0.15932 0 1 + 35053 21740 23587 23602 34422 34422 0.23617311746966152 PVLVVKKGLL 10 Unmodified _PVLVVKKGLL_ 0 0 0 REV__ENST00000583834.5_1_17:72768345-72771837:-|nuORF REV__ENST00000583834.5_1_17:72768345-72771837:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2835083007812 2 533.373352 1064.73215 NaN NaN NaN NaN NaN NaN NaN 156.23 1 150.96 150.46 151.46 -5.2712 0 0 0 0.22588 1 30296 30296 1.8442 0 1 + 35054 15148 23588 23603 34423 34423 0.20237519718625663 PVLVVKKGLL 10 Unmodified _PVLVVKKGLL_ 0 0 0 REV__ENST00000583834.5_1_17:72768345-72771837:-|nuORF REV__ENST00000583834.5_1_17:72768345-72771837:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2677612304688 2 533.373352 1064.73215 NaN NaN NaN NaN NaN NaN NaN 156.24 1 150.97 150.47 151.47 -5.2712 0 0 0 2.8426 1 30299 30299 0.13989 0 1 + 35055 15148 23588 23603 34424 34424 0.20237519718625663 PVLVVKKGLL 10 Unmodified _PVLVVKKGLL_ 0 0 0 REV__ENST00000583834.5_1_17:72768345-72771837:-|nuORF REV__ENST00000583834.5_1_17:72768345-72771837:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2677612304688 2 533.373352 1064.73215 NaN NaN NaN NaN NaN NaN NaN 156.26 1 150.99 150.49 151.49 -5.2712 0 0 0 0.22588 1 30303 30303 1.8442 0 1 + 35056 15148 23588 23603 34425 34425 0.20237519718625663 PVMFAVKQQN 10 Unmodified _PVMFAVKQQN_ 0 0 0 REV__ENSG00000003989|ENST00000494857|SLC7A2 REV__ENSG00000003989|ENST00000494857|SLC7A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7097473144531 3 387.874348 1160.60121 NaN NaN NaN NaN NaN NaN NaN 12.622 1 12.622 12.122 13.122 0 0 0 0 0.22588 1 1770 1770 0.77653 0 1 + 35057 13831 23589 23604 34426 34426 0.027337610082668107 PVNHYLYRFFQ 11 Unmodified _PVNHYLYRFFQ_ 0 0 0 REV__ENST00000509825.1_1_4:85672578-85676547:-|nuORF REV__ENST00000509825.1_1_4:85672578-85676547:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3771362304688 2 742.377686 1482.74082 NaN NaN NaN NaN NaN NaN NaN 149.62 1 149.62 149.12 150.12 0 0 0 0 0.22632 1 29956 29956 0.11104 0.084836 1 + 35058 17592 23590 23605 34427 34427 0.018758416171067438 PVNNKDEKGDE 11 Unmodified _PVNNKDEKGDE_ 0 0 0 REV__sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2 REV__sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7734375 2 622.791306 1243.56806 NaN NaN NaN NaN NaN NaN NaN 171.22 1 171.22 170.72 171.72 0 0 0 0 0.22632 1 35261 35261 0.11104 0.079632 1 + 35059 24696 23591 23606 34428 34428 -0.04398194300756586 PVNPRRDD 8 Unmodified _PVNPRRDD_ 0 0 0 REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1 REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.90545654296875 3 323.50179 967.483542 -0.58388 -0.00018889 -0.034909 -1.1293E-05 -0.61879 -0.00020018 323.5017970810764 14.245 0.16913 14.245 14.109 14.279 0 7 4 2 0 0 0 1.0281 1 2109 2109 0.45834 0 1 282650 + 35060 16221 23592 23607 34429 34429 -0.0015005553619857892 PVNVTIELEEM 11 Unmodified _PVNVTIELEEM_ 0 0 0 REV__nc|ENSG00000145734|A6H8Y1-8|BDP1 REV__nc|ENSG00000145734|A6H8Y1-8|BDP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.253173828125 3 425.216328 1272.62715 NaN NaN NaN NaN NaN NaN NaN 59.196 1 56.286 55.786 56.786 -2.9105 0 0 0 0.20745 1 11375 11375 17.049 10.011 1 + 35061 16851 23593 23608 34430 34430 0.0017456566920373007 PVPAGGPG 8 Unmodified _PVPAGGPG_ 0 0 0 REV__ENST00000394063.5_1_9:128420069-128469396:-|nuORF REV__ENST00000394063.5_1_9:128420069-128469396:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.79461669921875 2 326.176664 650.338775 -0.47708 -0.00015561 0.74109 0.00024173 0.26402 8.6116E-05 326.17686024116944 20.477 0.28123 20.477 20.351 20.632 0 10 7 2 0 0 0 0.87947 1 3388 3388 1.7423 0 1 327550 + 35062 21042 23594 23609 34431 34431 -0.00038071945380124816 PVPAPHLLP 9 Unmodified _PVPAPHLLP_ 0 0 0 REV__ENST00000423469.6_1_8:144919671-144920039:-|nuORF REV__ENST00000423469.6_1_8:144919671-144920039:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.2232666015625 3 314.192006 939.554188 NaN NaN NaN NaN NaN NaN NaN 13.925 1 12.811 12.311 13.311 -1.1142 0 0 0 0.23508 1 2052 2052 1.1933 0 1 + 35063 21535 23595 23610 34432 34432 0.081992695194117 PVPLILWIG 9 Unmodified _PVPLILWIG_ 0 0 0 REV__ENST00000606250.1_1_10:31607570-31607903:-|nuORF REV__ENST00000606250.1_1_10:31607570-31607903:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 504.6403503417969 2 504.318046 1006.62154 NaN NaN NaN NaN NaN NaN NaN 158.01 1 152.73 152.23 153.23 -5.2712 0 0 0 0.19657 1 30654 30654 4.897 0 1 + 35064 23457 23596 23611 34433 34433 0.11849299730363327 PVPMPVPI 8 Unmodified _PVPMPVPI_ 0 0 0 REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4 REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2486877441406 2 425.248775 848.482997 NaN NaN NaN NaN NaN NaN NaN 163.05 1 158.26 157.76 158.76 -4.7898 0 0 0 0.23711 1 32475 32475 0.063987 0.063987 1 + 35065 16891 23597 23612 34434 34434 0.05269433490400388 PVPMPVPI 8 Unmodified _PVPMPVPI_ 0 0 0 REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4 REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2486877441406 2 425.248775 848.482997 NaN NaN NaN NaN NaN NaN NaN 163.06 1 158.27 157.77 158.77 -4.7898 0 0 0 0.21486 1 32479 32479 6.3541 0 1 + 35066 16891 23597 23612 34435 34435 0.05269433490400388 PVPPVPGGG 9 Unmodified _PVPPVPGGG_ 0 0 0 nc|ENSG00000072071|O94910|ADGRL1;ENSG00000072071|ENST00000361434|ADGRL1 nc|ENSG00000072071|O94910|ADGRL1 nc|ENSG00000072071|O94910|ADGRL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 388.53118896484375 2 388.718696 775.422839 0.24258 9.4294E-05 0.05125 1.9922E-05 0.29383 0.00011422 388.71858120400407 46.273 0.37957 46.273 46.038 46.418 0 14 10 2 0 0 0 0.55732 1 8731 8731 0.40827 0 1 515850 35067 1455 23598 23613 34436 34436 0.026144591515389948 PVPSLVPRPPQ 11 Unmodified _PVPSLVPRPPQ_ 0 0 0 nc|ENSG00000011451|O95785-2|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;ENST00000600632.1_1_19:15534992-15535583:-|nuORF nc|ENSG00000011451|O95785-2|WIZ nc|ENSG00000011451|O95785-2|WIZ MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 594.1099243164062 2 593.850773 1185.68699 NaN NaN NaN NaN NaN NaN NaN 170.51 1 165.72 165.22 166.22 -4.7898 0 0 0 0.23018 1 34611 34611 8.1555 1.4324 1 35068 1079 23599 23614 34437 34437 0.10157669185400664 PVPVLAPG 8 Unmodified _PVPVLAPG_ 0 0 0 ENST00000531484.5_1_11:65421851-65429483:-|nuORF;ENST00000525693.5_1_11:65421851-65422496:-|nuORF;RELA|p.H487Tfs*7|1|0.33|ENSG00000173039|chr11:65654575-65654575|G/-|frameshift_variant;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;RELA|p.P521Rfs*26|1|0.42|ENSG00000173039|chr11:65654472-65654472|G/-|frameshift_variant;RELA|p.D512Tfs*35|1|0.34|ENSG00000173039|chr11:65654501-65654501|G/-|frameshift_variant;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA ENST00000531484.5_1_11:65421851-65429483:-|nuORF ENST00000531484.5_1_11:65421851-65429483:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2095031738281 2 375.231439 748.448326 NaN NaN NaN NaN NaN NaN NaN 26.405 1 26.405 25.905 26.905 0 0 0 0 0.21486 1 4621 4621 6.3541 0 1 35069 10969 23600 23615 34438 34438 0.0640393367393699 PVQAENVY 8 Unmodified _PVQAENVY_ 0 0 0 REV__ENST00000472931.6_1_7:13946033-14025001:-|nuORF REV__ENST00000472931.6_1_7:13946033-14025001:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.229736328125 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 33.364 1 31.217 30.717 31.717 -2.1468 0 0 0 0.21486 1 5817 5817 11.114 0.93107 1 + 35070 22065 23601 23616 34439 34439 -0.017787808905723068 PVQFDLPD 8 Unmodified _PVQFDLPD_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 930.4814453125 1 930.456724 929.449448 0.74849 0.00069644 -0.37707 -0.00035085 0.37142 0.00034559 930.456141770815 106.56 0.56945 106.56 106.36 106.93 0 23 15 2 0 0 0 0.087478 1 20949 20949 78.149 13.913 1 3518900 35071 3804 23602 23617 34440 34440 -0.018098967478181294 PVQFDLPD 8 Unmodified _PVQFDLPD_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25042724609375 2 465.732 929.449448 -0.33024 -0.00015381 0.34885 0.00016247 0.018602 8.6638E-06 465.73212001298003 111.61 0.81056 107.19 106.89 107.7 -4.4231 51 22 3 0 0 0 0.37918 1 22054 22054 44.407 4.4497 1 4355300 35072 3804 23602 23617 34441 34441 -0.018098967478181294 PVQFDLPD 8 Unmodified _PVQFDLPD_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 930.5 1 930.456724 929.449448 0.16282 0.00015149 0.15149 0.00014096 0.31431 0.00029245 930.4566150395767 111.61 0.59434 107.12 106.93 107.52 -4.4915 29 16 2 0 0 0 0.060254 1 21392 21392 85.357 24.967 1 4272600 35073 3804 23602 23617 34442 34442 -0.018098967478181294 PVQFDLPD 8 Unmodified _PVQFDLPD_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25738525390625 2 465.732 929.449448 -0.10991 -5.1186E-05 0.24329 0.00011331 0.13339 6.2122E-05 465.73199971262454 111.61 0.76495 107.11 106.89 107.66 -4.4915 43 21 3 0 0 0 0.077908 1 21433 21433 81.864 17.628 1 3123300 35074 3804 23602 23617 34443 34443 -0.018098967478181294 PVQFDLPD 8 Unmodified _PVQFDLPD_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 930.49755859375 1 930.456724 929.449448 0.74844 0.00069639 -0.11901 -0.00011073 0.62943 0.00058566 930.4564384958679 111.32 0.6953 107.09 106.76 107.46 -4.2289 31 19 2 0 0 0 0.060254 1 21486 21486 85.357 14.641 1 3394600 35075 3804 23602 23617 34444 34444 -0.018098967478181294 PVQFDLPD 8 Unmodified _PVQFDLPD_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 930.456724 929.449448 0.74849 0.00069644 -0.37707 -0.00035085 0.37142 0.00034559 930.456141770815 106.56 0.56945 106.56 106.36 106.93 0 0 0 NaN 78.149 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3518900 35076 3804 23602 23617 -0.018098967478181294 PVQFDLPD 8 Unmodified _PVQFDLPD_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 930.456724 929.449448 -0.12505 -0.00011635 0.38071 0.00035424 0.25566 0.00023789 930.4569850372498 111.63 0.66459 107.2 106.93 107.59 -4.4231 0.06671 0.00020604 NaN 85.357 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3972500 35077 3804 23602 23617 -0.018098967478181294 PVQFFQTDL 9 Unmodified _PVQFFQTDL_ 0 0 0 ENSG00000113209|ENST00000231134|PCDHB5 ENSG00000113209|ENST00000231134|PCDHB5 ENSG00000113209|ENST00000231134|PCDHB5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7664184570312 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 106.64 1 106.64 106.14 107.14 0 0 0 0 0.1761 1 20967 20967 26.884 7.6267 1 35078 2727 23603 23618 34445 34445 0.0013803672338781325 PVRFIIDRSGI 11 Unmodified _PVRFIIDRSGI_ 0 0 0 tr|U7STZ4|U7STZ4_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxsPE=3SV=1 tr|U7STZ4|U7STZ4_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxsPE=3SV=1 tr|U7STZ4|U7STZ4_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxsPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2537536621094 3 424.918945 1271.73501 0.46281 0.00019666 -0.29791 -0.00012659 0.1649 7.007E-05 424.91873646557605 78.113 0.76955 78.113 77.773 78.542 0 38 21 2 0 0 0 0.79196 1 15164 15164 4.7159 0 1 2346400 35079 26177 23604 23619 34446 34446 0.11000743105455513 PVRPKGGEL 9 Unmodified _PVRPKGGEL_ 0 0 0 ENSG00000214929|ENST00000344803|SPATA31D1 ENSG00000214929|ENST00000344803|SPATA31D1 ENSG00000214929|ENST00000344803|SPATA31D1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.04705810546875 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 73.846 1 73.846 73.346 74.346 0 0 0 0 0.23508 1 14329 14329 2.7352 0 1 35080 7736 23605 23620 34447 34447 0.07245180025711306 PVRPKGGEL 9 Unmodified _PVRPKGGEL_ 0 0 0 ENSG00000214929|ENST00000344803|SPATA31D1 ENSG00000214929|ENST00000344803|SPATA31D1 ENSG00000214929|ENST00000344803|SPATA31D1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.1538391113281 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 73.981 1 73.981 73.481 74.481 0 0 0 0 0.23508 1 14358 14358 2.7352 0 1 35081 7736 23605 23620 34448 34448 0.07245180025711306 PVRRRKCWRRR 11 Unmodified _PVRRRKCWRRR_ 0 0 0 REV__ENST00000281881.7_1_1:176905297-177133812:-|nuORF REV__ENST00000281881.7_1_1:176905297-177133812:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6817016601562 3 523.647899 1567.92187 NaN NaN NaN NaN NaN NaN NaN 150.32 1 145.59 145.09 146.09 -4.7323 0 0 0 0.22632 1 29855 29855 0.094841 0 1 + 35082 13134 23606 23621 34449 34449 0.16062501232659088 PVRRRQVR 8 Unmodified _PVRRRQVR_ 0 0 0 REV__nc|ENSG00000185594|Q6RVD6|SPATA8 REV__nc|ENSG00000185594|Q6RVD6|SPATA8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2660522460938 2 533.838865 1065.66318 0.49526 0.00026439 -2.8107 -0.0015004 -2.3154 -0.0012361 534.3399676676704 159.69 0.20914 154.42 154.31 154.52 -5.2711 6 5 2 0 0 0 0.89951 1 30991 30991 0 0 1 879480 + 35083 24208 23607 23622 34450 34450 0.1329729326225788 PVRRWRHR 8 Unmodified _PVRRWRHR_ 0 0 0 REV__ENST00000460670.5_1_19:37096371-37096590:+|nuORF REV__ENST00000460670.5_1_19:37096371-37096590:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71295166015625 3 388.23208 1161.67441 0.021133 8.2045E-06 -0.90905 -0.00035292 -0.88791 -0.00034472 388.2316917030343 31.972 0.27991 29.741 29.586 29.866 -2.2305 10 7 2 0 0 0 1.0243 1 5833 5833 1.6526 0 1 766320 + 35084 21879 23608 23623 34451 34451 0.10004115356400689 PVRRWRPG 8 Unmodified _PVRRWRPG_ 0 0 0 REV__ENST00000608317.1_1_7:154795447-154795768:+|nuORF REV__ENST00000608317.1_1_7:154795447-154795768:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.0224609375 3 341.870148 1022.58862 -0.67038 -0.00022918 -0.64086 -0.00021909 -1.3112 -0.00044827 341.86987834399724 12.946 0.3177 11.816 11.664 11.982 -1.1293 13 8 2 0 0 0 1.0277 1 1610 1610 1.6526 0.58116 1 238500 + 35085 23478 23609 23624 34452 34452 0.07822530450891918 PVRRWRPG 8 Unmodified _PVRRWRPG_ 0 0 0 REV__ENST00000608317.1_1_7:154795447-154795768:+|nuORF REV__ENST00000608317.1_1_7:154795447-154795768:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 341.870148 1022.58862 -0.93168 -0.00031851 -0.62396 -0.00021331 -1.5556 -0.00053183 341.86996754809223 12.892 0.3395 11.883 11.695 12.035 -1.0098 0.033223 1.0763E-05 NaN 1.6526 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 234780 + 35086 23478 23609 23624 0.07822530450891918 PVRTRRRRK 9 Unmodified _PVRTRRRRK_ 0 0 0 ENSG00000179588|ENST00000319555|ZFPM1 ENSG00000179588|ENST00000319555|ZFPM1 ENSG00000179588|ENST00000319555|ZFPM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 612.89599609375 2 612.897246 1223.77994 NaN NaN NaN NaN NaN NaN NaN 164.92 1 159.88 159.38 160.38 -5.0446 0 0 0 0.19636 1 32203 32203 2.4985 2.4852 1 35087 6637 23610 23625 34453 34453 0.17700031481990663 PVRVCQNCY 9 Unmodified _PVRVCQNCY_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2591552734375 2 541.249511 1080.48447 0.29981 0.00016227 -0.126 -6.8199E-05 0.17381 9.4073E-05 541.2493686539531 130.17 0.20471 130.17 130.1 130.3 0 8 5 2 0 0 0 0.65439 1 25731 25731 9.3474 1.4373 1 1734100 35088 5449 23611 23626 34454 34454 -0.05255300483167957 PVSARVGGRRP 11 Unmodified _PVSARVGGRRP_ 0 0 0 REV__ENSG00000163982|ENST00000296358|OTOP1 REV__ENSG00000163982|ENST00000296358|OTOP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.324462890625 2 576.341438 1150.66832 NaN NaN NaN NaN NaN NaN NaN 157.07 1 157.07 156.57 157.57 0 0 0 0 0.22501 1 31519 31519 12.241 2.6967 1 + 35089 17634 23612 23627 34455 34455 0.0990155233423593 PVSAVTQLELF 11 Unmodified _PVSAVTQLELF_ 0 0 0 DAB1|p.A369Gfs*60|1|0.22|ENSG00000173406|chr1:57015320-57015321|-/C|frameshift_variant;DAB1|p.L420Pfs*9|1|0.38|ENSG00000173406|chr1:57015167-57015168|-/G|frameshift_variant;ENSG00000173406|ENST00000371236|DAB1 DAB1|p.A369Gfs*60|1|0.22|ENSG00000173406|chr1:57015320-57015321|-/C|frameshift_variant DAB1|p.A369Gfs*60|1|0.22|ENSG00000173406|chr1:57015320-57015321|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3006591796875 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 154.18 1 154.18 153.68 154.68 0 0 0 0 0.21872 1 30900 30900 14.405 2.9107 1 35090 775 23613 23628 34456 34456 0.06146836991752025 PVSCQWCGW 9 Unmodified _PVSCQWCGW_ 0 0 0 REV__ENST00000481084.5_1_11:118971055-118971859:-|nuORF REV__ENST00000481084.5_1_11:118971055-118971859:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2685546875 2 533.21768 1064.42081 NaN NaN NaN NaN NaN NaN NaN 155.94 1 151.16 150.66 151.66 -4.7791 0 0 0 0.23508 1 31000 31000 8.5933 0 1 + 35091 22172 23614 23629 34457 34457 -0.10882660920265153 PVSDAYAPH 9 Unmodified _PVSDAYAPH_ 0 0 0 REV__BEGAIN|p.Y222Tfs*30|1|0.1|ENSG00000183092|chr14:100539088-100539088|G/-|frameshift_variant REV__BEGAIN|p.Y222Tfs*30|1|0.1|ENSG00000183092|chr14:100539088-100539088|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7270812988281 2 478.727249 955.439946 -0.098954 -4.7372E-05 -0.30271 -0.00014492 -0.40167 -0.00019229 478.7270162391262 46.787 0.52465 43.921 43.507 44.032 -2.8665 25 14 2 0 0 0 0.66537 1 8513 8513 8.5933 0.68312 1 747090 + 35092 13192 23615 23630 34458 34458 -0.039556650333452126 PVSDAYAPH 9 Unmodified _PVSDAYAPH_ 0 0 0 REV__BEGAIN|p.Y222Tfs*30|1|0.1|ENSG00000183092|chr14:100539088-100539088|G/-|frameshift_variant REV__BEGAIN|p.Y222Tfs*30|1|0.1|ENSG00000183092|chr14:100539088-100539088|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.727249 955.439946 -0.0091064 -4.3595E-06 -0.5619 -0.000269 -0.57101 -0.00027336 478.72712195637166 46.684 0.55715 43.806 43.54 44.098 -2.8777 -0.019599 -1.21E-05 NaN 8.5933 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1120200 + 35093 13192 23615 23630 -0.039556650333452126 PVSDAYAPH 9 Unmodified _PVSDAYAPH_ 0 0 0 REV__BEGAIN|p.Y222Tfs*30|1|0.1|ENSG00000183092|chr14:100539088-100539088|G/-|frameshift_variant REV__BEGAIN|p.Y222Tfs*30|1|0.1|ENSG00000183092|chr14:100539088-100539088|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.727249 955.439946 -0.098954 -4.7372E-05 -0.30271 -0.00014492 -0.40167 -0.00019229 478.7270162391262 46.787 0.52465 43.921 43.507 44.032 -2.8665 0.09477 0.00023606 NaN 8.5933 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 747090 + 35094 13192 23615 23630 -0.039556650333452126 PVSDEHIIYKY 11 Unmodified _PVSDEHIIYKY_ 0 0 0 REV__ENSG00000156140|ENST00000286657|ADAMTS3 REV__ENSG00000156140|ENST00000286657|ADAMTS3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.1852722167969 4 341.677768 1362.68197 -0.35148 -0.00012009 -0.1726 -5.8975E-05 -0.52408 -0.00017907 341.67776388945475 32.242 0.35213 32.242 32.047 32.399 0 16 9 2 0 0 0 0.96214 1 5872 5872 0.50596 0.34663 1 992390 + 35095 17247 23616 23631 34459 34459 0.015133205321490095 PVSDEHIIYKY 11 Unmodified _PVSDEHIIYKY_ 0 0 0 REV__ENSG00000156140|ENST00000286657|ADAMTS3 REV__ENSG00000156140|ENST00000286657|ADAMTS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 341.677768 1362.68197 -0.48916 -0.00016714 0.37467 0.00012802 -0.1145 -3.9121E-05 341.67787400042033 34.882 0.34941 32.488 32.249 32.599 -2.3938 0.11534 0.00052354 NaN 0.50596 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 696400 + 35096 17247 23616 23631 0.015133205321490095 PVSDEHIIYKY 11 Unmodified _PVSDEHIIYKY_ 0 0 0 REV__ENSG00000156140|ENST00000286657|ADAMTS3 REV__ENSG00000156140|ENST00000286657|ADAMTS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 341.677768 1362.68197 0.18551 6.3386E-05 -0.3227 -0.00011026 -0.13719 -4.6875E-05 341.67774153911074 34.64 0.38783 32.387 32.218 32.606 -2.2527 0.01461 -0.00042957 NaN 0.50596 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 770180 + 35097 17247 23616 23631 0.015133205321490095 PVSDIRYI 8 Unmodified _PVSDIRYI_ 0 0 0 MARVELD2|p.P430Qfs*9|1|0.14|ENSG00000152939|chr5:69432628-69432628|C/-|frameshift_variant;nc|ENSG00000152939|Q8N4S9-2|MARVELD2;MARVELD2|p.E527Rfs*4|1|0.32|ENSG00000152939|chr5:69441547-69441548|-/A|frameshift_variant;MARVELD2|p.E527Nfs*6|2|0.3|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant;nc|ENSG00000152939|Q8N4S9-3|MARVELD2;ENSG00000152939|ENST00000325631|MARVELD2;MARVELD2|p.A205Pfs*58|1|0.3|ENSG00000152939|chr5:69419994-69419994|G/-|frameshift_variant MARVELD2|p.P430Qfs*9|1|0.14|ENSG00000152939|chr5:69432628-69432628|C/-|frameshift_variant MARVELD2|p.P430Qfs*9|1|0.14|ENSG00000152939|chr5:69432628-69432628|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7696533203125 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 167.45 1 162.56 162.06 163.06 -4.8916 0 0 0 0.21323 1 32935 32935 14.582 3.7578 1 35098 4946 23617 23632 34460 34460 0.04098071414523474 PVSDPEFF 8 Unmodified _PVSDPEFF_ 0 0 0 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;nc|ENSG00000174844|Q6ZR08|DNAH12 DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.147705078125 3 313.148243 936.422899 0.034185 1.0705E-05 0.51034 0.00015981 0.54453 0.00017052 313.1482688557536 106.53 1.1674 102.44 101.92 103.09 -4.0913 45 33 2 0 0 0 0.85653 1 20598 20598 1.8442 0 1 1146400 35099 861;12472 23618 23633 34461 34461 -0.04785585639137935 PVSDTLLTA 9 Unmodified _PVSDTLLTA_ 0 0 0 REV__ENST00000439129.5_2_22:42533343-42533400:+|nuORF REV__ENST00000439129.5_2_22:42533343-42533400:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23876953125 2 458.752933 915.491313 0.54835 0.00025156 -1.2016 -0.00055124 -0.65326 -0.00029968 458.7528549302988 102.73 0.56903 98.713 98.388 98.957 -4.0212 21 15 2 0 0 0 0.23667 1 19723 19723 50.855 16.753 1 1168800 + 35100 21690 23619 23634 34462 34462 0.03018658940709429 PVSFSTPPP 9 Unmodified _PVSFSTPPP_ 0 0 0 BSN|p.T1327Pfs*44|1|0.07|ENSG00000164061|chr3:49653530-49653530|C/-|frameshift_variant BSN|p.T1327Pfs*44|1|0.07|ENSG00000164061|chr3:49653530-49653530|C/-|frameshift_variant BSN|p.T1327Pfs*44|1|0.07|ENSG00000164061|chr3:49653530-49653530|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.67 1 71.305 70.805 71.805 -3.3643 0 0 0 0.19665 1 14567 14567 0.073264 0 1 35101 342 23620 23635 34463 34463 0.003546936318684857 PVSFSTPPP 9 Unmodified _PVSFSTPPP_ 0 0 0 BSN|p.T1327Pfs*44|1|0.07|ENSG00000164061|chr3:49653530-49653530|C/-|frameshift_variant BSN|p.T1327Pfs*44|1|0.07|ENSG00000164061|chr3:49653530-49653530|C/-|frameshift_variant BSN|p.T1327Pfs*44|1|0.07|ENSG00000164061|chr3:49653530-49653530|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1643981933594 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.191 1 71.468 70.968 71.968 -3.7227 0 0 0 0.1964 1 14218 14218 0.073264 0 1 35102 342 23620 23635 34464 34464 0.003546936318684857 PVSGGHGA 8 Unmodified _PVSGGHGA_ 0 0 0 nc|ENSG00000130182|Q96SZ4-3|ZSCAN10 nc|ENSG00000130182|Q96SZ4-3|ZSCAN10 nc|ENSG00000130182|Q96SZ4-3|ZSCAN10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.1863098144531 2 341.16937 680.324188 NaN NaN NaN NaN NaN NaN NaN 63.156 1 63.156 62.656 63.656 0 0 0 0 0.23366 1 12140 12140 0.25148 0 1 35103 12317 23621 23636 34465 34465 -0.028761440935227256 PVSHTKFLD 9 Unmodified _PVSHTKFLD_ 0 0 0 REV__ENSG00000146670|ENST00000275517|CDCA5 REV__ENSG00000146670|ENST00000275517|CDCA5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.280029296875 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 155.16 1 149.9 149.4 150.4 -5.2526 0 0 0 0.23508 1 30087 30087 6.2058 1.8765 1 + 35104 16896 23622 23637 34466 34466 0.025174564432290936 PVSINWSVST 10 Unmodified _PVSINWSVST_ 0 0 0 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7897338867188 2 545.282389 1088.55022 0.56553 0.00030837 -0.51034 -0.00027828 0.055186 3.0092E-05 545.2820767375925 82.462 1.5448 82.462 81.963 83.508 0 131 43 6 0 0 0 0.72988 1 16081 16081 8.1555 0.8663 1 296390000 + 35105 17616 23623 23638 34467 34467 0.009491352350551097 PVSMDETESS 10 Unmodified _PVSMDETESS_ 0 0 0 REV__nc|ENSG00000099290|Q641Q2-2|WASHC2A REV__nc|ENSG00000099290|Q641Q2-2|WASHC2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2590942382812 2 541.221336 1080.42812 0.29029 0.00015711 0.051109 2.7661E-05 0.3414 0.00018477 541.721782446489 133.92 0.31494 129.11 128.99 129.3 -4.8175 12 8 2 0 0 0 0.73842 1 25807 25807 7.2892 0 1 1749500 + 35106 14633 23624 23639 34468 34468 -0.10887694629491307 PVSSLEELEF 10 Unmodified _PVSSLEELEF_ 0 0 0 REV__nc|ENSG00000162636|Q5T8I3-2|EEIG2 REV__nc|ENSG00000162636|Q5T8I3-2|EEIG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.322509765625 2 575.287337 1148.56012 -0.15599 -8.974E-05 0.73565 0.00042321 0.57966 0.00033347 575.2878759654265 34.383 0.52602 32.066 31.767 32.293 -2.3175 55 14 5 0 0 0 0.59928 1 6339 6339 19.257 2.1441 1 28396000 + 35107 17512 23625 23640 34469 34469 -0.008217215502327235 PVSSQCRP 8 Unmodified _PVSSQCRP_ 0 0 0 REV__STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant REV__STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2165222167969 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 93.834 1 89.99 89.49 90.49 -3.844 0 0 0 0.21323 1 17994 17994 14.582 0 1 + 35108 19797 23626 23641 34470 34470 -0.023875877025943737 PVSTKKLKIK 10 Unmodified _PVSTKKLKIK_ 0 0 0 AluJr_dup44423|chrX:77901730-77902035:-|1.1282089748604902|0.1951206886456881|2.53|481.0|2|1|sense AluJr_dup44423|chrX:77901730-77902035:-|1.1282089748604902|0.1951206886456881|2.53|481.0|2|1|sense AluJr_dup44423|chrX:77901730-77902035:-|1.1282089748604902|0.1951206886456881|2.53|481.0|2|1|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2129211425781 3 381.26042 1140.75943 NaN NaN NaN NaN NaN NaN NaN 18.507 1 16.992 16.492 17.492 -1.5148 0 0 0 2.8426 1 2745 2745 0.0013812 0 1 35109 129 23627 23642 34471 34471 0.1946800325897584 PVSTPEECCHT 11 Unmodified _PVSTPEECCHT_ 0 0 0 nc|ENSG00000198822|Q14832-2|GRM3 nc|ENSG00000198822|Q14832-2|GRM3 nc|ENSG00000198822|Q14832-2|GRM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2968139648438 2 601.744456 1201.47436 0.40384 0.00024301 1.6304 0.00098106 2.0342 0.0012241 601.7447265678479 32.1 0.24583 32.1 31.978 32.224 0 8 6 2 0 0 0 0.68099 1 5839 5839 13.042 4.8869 1 1405000 35110 12554 23628 23643 34472 34472 -0.11831952999045825 PVSVAVAA 8 Unmodified _PVSVAVAA_ 0 0 0 REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.55291748046875 2 357.213246 712.41194 NaN NaN NaN NaN NaN NaN NaN 56.752 1 56.752 56.252 57.252 0 0 0 0 0.21022 1 10841 10841 17.087 5.9721 1 + 35111 12941 23629 23644 34473 34473 0.0442305677722743 PVTAFGLG 8 Unmodified _PVTAFGLG_ 0 0 0 nc|ENSG00000148290|Q15526-2|SURF1;ENSG00000148290|ENST00000371974|SURF1 nc|ENSG00000148290|Q15526-2|SURF1 nc|ENSG00000148290|Q15526-2|SURF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21368408203125 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 162.78 1 157.59 157.09 158.09 -5.1878 0 0 0 0.23711 1 31626 31626 0.0082765 0 1 35112 4735 23630 23645 34474 34474 0.022150567772541763 PVTAFGLG 8 Unmodified _PVTAFGLG_ 0 0 0 nc|ENSG00000148290|Q15526-2|SURF1;ENSG00000148290|ENST00000371974|SURF1 nc|ENSG00000148290|Q15526-2|SURF1 nc|ENSG00000148290|Q15526-2|SURF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2138366699219 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 163.24 1 158.1 157.6 158.6 -5.137 0 0 0 0.23711 1 31757 31757 0.0082765 0 1 35113 4735 23630 23645 34475 34475 0.022150567772541763 PVTCSRHPA 9 Unmodified _PVTCSRHPA_ 0 0 0 REV__ENST00000329654.8_1_1:66839119-66839245:+|nuORF REV__ENST00000329654.8_1_1:66839119-66839245:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.1470947265625 3 323.164121 966.470534 -0.47913 -0.00015484 -0.17348 -5.6063E-05 -0.65261 -0.0002109 323.1640438039047 116.35 0.45406 116.35 116.15 116.61 0 19 12 2 0 0 0 0.884 1 22915 22915 0 0 1 1625500 + 35114 20603 23631 23646 34476 34476 -0.014042099199514269 PVTKKRLS 8 Unmodified _PVTKKRLS_ 0 0 0 ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16937255859375 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 110.19 1 110.19 109.69 110.69 0 0 0 0 0.21486 1 21672 21672 1.6526 0 1 35115 5856 23632 23647 34477 34477 0.11986056922410171 PVTKQITRK 9 Unmodified _PVTKQITRK_ 0 0 0 REV__ENSG00000206474|ENST00000444197|OR10C1 REV__ENSG00000206474|ENST00000444197|OR10C1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5606384277344 3 357.560869 1069.66078 0.19058 6.8145E-05 -0.030244 -1.0814E-05 0.16034 5.7331E-05 357.5606822573829 79.621 0.38237 79.621 79.34 79.722 0 14 10 2 0 0 0 0.59129 1 15459 15459 0.0033805 0 1 772760 + 35116 19621 23633 23648 34478 34478 0.12873400013927494 PVTLHWNID 9 Unmodified _PVTLHWNID_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ADGRV1|p.S2670Rfs*9|1|0.05|ENSG00000164199|chr5:90697000-90697001|-/GCCCAAAATAATT|frameshift_variant;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ADGRV1|p.S1982Ffs*2|1|0.3|ENSG00000164199|chr5:90683859-90683860|-/T|frameshift_variant ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7801513671875 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 163.57 1 158.51 158.01 159.01 -5.0648 0 0 0 0.19679 1 31836 31836 0.12781 0 1 35117 5525 23634 23649 34479 34479 0.012608588174998658 PVTLSEENRSE 11 Unmodified _PVTLSEENRSE_ 0 0 0 ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant;nc|ENSG00000125257|O15439-3|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4 ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7582397460938 2 630.806956 1259.59936 NaN NaN NaN NaN NaN NaN NaN 96.403 1 92.483 91.983 92.983 -3.9194 0 0 0 0.1832 1 18498 18498 22.736 10.496 1 35118 18 23635 23650 34480 34480 -0.020056212666759166 PVTPDSGYS 9 Unmodified _PVTPDSGYS_ 0 0 0 nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENSG00000137770|ENST00000260327|CTDSPL2 nc|ENSG00000137770|Q05D32-2|CTDSPL2 nc|ENSG00000137770|Q05D32-2|CTDSPL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.540771484375 2 461.711265 921.407977 NaN NaN NaN NaN NaN NaN NaN 79.023 1 75.347 74.847 75.847 -3.676 0 0 0 0.23508 1 15051 15051 12.532 0.89125 1 35119 4108 23636 23651 34481 34481 -0.05587077507129834 PVTRPWFY 8 Unmodified _PVTRPWFY_ 0 0 0 REV__ENST00000471702.2_2_3:132339980-132400782:-|nuORF REV__ENST00000471702.2_2_3:132339980-132400782:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2794189453125 2 533.279452 1064.54435 NaN NaN NaN NaN NaN NaN NaN 64.215 1 61.218 60.718 61.718 -2.9975 0 0 0 0.23711 1 12419 12419 0.62683 0 1 + 35120 12910 23637 23652 34482 34482 0.014660815140359773 PVTRRRDPRRR 11 Unmodified _PVTRRRDPRRR_ 0 0 0 REV__ENST00000326786.4_1_1:157106146-157108174:-|nuORF REV__ENST00000326786.4_1_1:157106146-157108174:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 488.9617919921875 3 488.962541 1463.86579 NaN NaN NaN NaN NaN NaN NaN 173.1 1 173.1 172.6 173.6 0 0 0 0 0.23698 1 35777 35777 0.50596 0.051438 1 + 35121 20586 23638 23653 34483 34483 0.15241571596857284 PVTTSSSTSTL 11 Unmodified _PVTTSSSTSTL_ 0 0 0 ENSG00000185133|ENST00000331075|INPP5J;nc|ENSG00000185133|Q15735-2|INPP5J ENSG00000185133|ENST00000331075|INPP5J ENSG00000185133|ENST00000331075|INPP5J MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2777709960938 2 540.774593 1079.53463 0.74742 0.00040419 -0.31828 -0.00017212 0.42914 0.00023207 540.7743409365063 108.96 0.70131 104.77 104.39 105.09 -4.1826 29 19 2 0 0 0 0.36229 1 20920 20920 47.749 13.347 1 2681900 35122 6964 23639 23654 34484 34484 -0.0019519607265010563 PVTVMRKT 8 Unmodified _PVTVMRKT_ 0 0 0 FAM149B1|p.P29Lfs*92|1|0.12|ENSG00000138286|chr10:73174721-73174721|C/-|frameshift_variant FAM149B1|p.P29Lfs*92|1|0.12|ENSG00000138286|chr10:73174721-73174721|C/-|frameshift_variant FAM149B1|p.P29Lfs*92|1|0.12|ENSG00000138286|chr10:73174721-73174721|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.2582702636719 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 113.69 1 109.16 108.66 109.66 -4.5259 0 0 0 0.21486 1 21826 21826 0.45834 0 1 35123 11794 23640 23655 34485 34485 0.06402721779340936 PVVKLLVGL 9 Unmodified _PVVKLLVGL_ 0 0 0 REV__NLRX1|p.G888Vfs*13|1|0.4|ENSG00000160703|chr11:119183169-119183169|G/-|frameshift_variant REV__NLRX1|p.G888Vfs*13|1|0.4|ENSG00000160703|chr11:119183169-119183169|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.2200012207031 3 313.219673 936.637189 NaN NaN NaN NaN NaN NaN NaN 175.84 1 170.94 170.44 171.44 -4.9008 0 0 0 0.23508 1 35051 35051 0 0 1 + 35124 24366 23641 23656 34486 34486 0.1663358624743978 PVVKVKLFT 9 Unmodified _PVVKVKLFT_ 0 0 0 nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant nc|ENSG00000081803|Q86UW7-3|CADPS2 nc|ENSG00000081803|Q86UW7-3|CADPS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.2876281738281 3 344.226827 1029.65865 NaN NaN NaN NaN NaN NaN NaN 16.646 1 15.424 14.924 15.924 -1.2219 0 0 0 0.23508 1 2405 2405 0.26902 0 1 35125 1628 23642 23657 34487 34487 0.14500971276152086 PVVLVLKKRP 10 Unmodified _PVVLVLKKRP_ 0 0 0 REV__ZNF407|p.P170Rfs*13|2|0.15|ENSG00000215421|chr18:74631523-74631523|C/-|frameshift_variant REV__ZNF407|p.P170Rfs*13|2|0.15|ENSG00000215421|chr18:74631523-74631523|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 574.7076416015625 2 574.897526 1147.7805 0.2709 0.00015574 -0.58712 -0.00033753 -0.31622 -0.00018179 575.3990905652574 164.28 0.17249 159.24 159.11 159.28 -5.0446 5 4 2 0 0 0 0.91149 1 32015 32015 0 0 1 3907500 + 35126 25576 23643 23658 34488 34488 0.21252013358480326 PVVPLIGGP 9 Unmodified _PVVPLIGGP_ 0 0 0 REV__ENST00000300456.4_1_9:131103041-131107595:+|nuORF REV__ENST00000300456.4_1_9:131103041-131107595:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2480163574219 2 424.765646 847.516739 0.12817 5.4442E-05 0.37446 0.00015906 0.50263 0.0002135 424.7657534721825 23.81 0.58557 23.81 23.48 24.066 0 24 16 2 0 0 0 0.78757 1 4111 4111 2.3027 0 1 1244600 + 35127 20401 23644 23659 34489 34489 0.08688178253805745 PVWEEEPI 8 Unmodified _PVWEEEPI_ 0 0 0 nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1 nc|ENSG00000182621|Q9NQ66-2|PLCB1 nc|ENSG00000182621|Q9NQ66-2|PLCB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 499.77685546875 2 499.745108 997.475663 0.059583 2.9776E-05 -2.0327 -0.0010159 -1.9732 -0.00098608 499.74391558789836 99.31 0.44885 95.353 95.241 95.689 -3.9564 19 12 2 0 0 0 0.88214 1 19066 19066 0.25148 0 1 781770 35128 6800 23645 23660 34490 34490 -0.023176275763375997 PVWQEDSCIC 10 Unmodified _PVWQEDSCIC_ 0 0 0 ENST00000480630.5_1_1:40430901-40433516:+|nuORF ENST00000480630.5_1_1:40430901-40433516:+|nuORF ENST00000480630.5_1_1:40430901-40433516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.26953125 2 590.244092 1178.47363 NaN NaN NaN NaN NaN NaN NaN 155.12 1 149.87 149.37 150.37 -5.2526 0 0 0 0.22588 1 30079 30079 1.8442 0 1 35129 10360 23646 23661 34491 34491 -0.1084674764808824 PVWVRQAPAR 10 Unmodified _PVWVRQAPAR_ 0 0 0 REV__ENST00000587482.1_1_19:3649915-3700388:-|nuORF REV__ENST00000587482.1_1_19:3649915-3700388:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2636108398438 2 590.340907 1178.66726 NaN NaN NaN NaN NaN NaN NaN 114.97 1 114.97 114.47 115.47 0 0 0 0 0.22588 1 22619 22619 9.3831 0.63772 1 + 35130 23274 23647 23662 34492 34492 0.0850733796530676 PVYAFSIKGP 10 Unmodified _PVYAFSIKGP_ 0 0 0 nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;ENSG00000140464|ENST00000268058|PML nc|ENSG00000140464|P29590-3|PML nc|ENSG00000140464|P29590-3|PML MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013854980469 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 72.159 1 72.159 71.659 72.659 0 0 0 0 0.22588 1 13985 13985 4.1895 1.1943 1 35131 12355 23648 23663 34493 34493 0.05019217482708882 PVYFFRKRWGQ 11 Unmodified _PVYFFRKRWGQ_ 0 0 0 ENST00000491833.5_1_X:153061290-153061545:+|nuORF ENST00000491833.5_1_X:153061290-153061545:+|nuORF ENST00000491833.5_1_X:153061290-153061545:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4010009765625 2 742.401496 1482.78844 NaN NaN NaN NaN NaN NaN NaN 148.32 1 143.17 142.67 143.67 -5.1557 0 0 0 0.2367 1 28712 28712 2.9952 0.26005 1 35132 10533 23649 23664 34494 34494 0.06635540607976509 PVYGGPMKQ 9 Unmodified _PVYGGPMKQ_ 0 0 0 REV__nc|ENSG00000101901|Q9NP73-4|ALG13 REV__nc|ENSG00000101901|Q9NP73-4|ALG13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 326.1700744628906 3 326.168872 975.484787 NaN NaN NaN NaN NaN NaN NaN 34.314 1 32.098 31.598 32.598 -2.2158 0 0 0 0.19691 1 6010 6010 0.37959 0 1 + 35133 14809 23650 23665 34495 34495 -0.003935574916454243 PVYNRCALY 9 Unmodified _PVYNRCALY_ 0 0 0 ENSG00000084710|ENST00000403714|EFR3B;nc|ENSG00000084710|Q9Y2G0-3|EFR3B;nc|ENSG00000084710|Q9Y2G0-2|EFR3B ENSG00000084710|ENST00000403714|EFR3B ENSG00000084710|ENST00000403714|EFR3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.1094055175781 3 366.851543 1097.5328 -0.53729 -0.00019711 -2.6097 -0.00095739 -3.147 -0.0011545 367.18489443857305 15.953 0.28227 14.731 14.572 14.855 -1.2219 10 7 2 0 0 0 0.884 1 2268 2268 0.26902 0.26902 1 123650 35134 1669 23651 23666 34496 34496 -0.012064835716046218 PVYVGRKV 8 Unmodified _PVYVGRKV_ 0 0 0 ENST00000524233.1_1_8:101280952-101287235:-|nuORF ENST00000524233.1_1_8:101280952-101287235:-|nuORF ENST00000524233.1_1_8:101280952-101287235:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 459.775634765625 2 459.281995 916.549437 -0.33714 -0.00015484 0.17714 8.1358E-05 -0.16 -7.3485E-05 459.2819991646603 19.805 0.65591 18.48 18.145 18.801 -1.3251 26 18 2 0 0 0 8448 1 3062 3062 0.0082765 0 1 1285800 35135 10877 23652 23667 34497 34497 0.08782385376662205 PVYVGRKV 8 Unmodified _PVYVGRKV_ 0 0 0 ENST00000524233.1_1_8:101280952-101287235:-|nuORF ENST00000524233.1_1_8:101280952-101287235:-|nuORF ENST00000524233.1_1_8:101280952-101287235:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 459.281995 916.549437 0.18861 8.6625E-05 0.23574 0.00010827 0.42435 0.0001949 459.2820784059618 18.446 0.35218 18.446 18.23 18.582 0 -0.060373 -6.9758E-05 NaN 0.0082765 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1128700 35136 10877 23652 23667 0.08782385376662205 PVYVGRKV 8 Unmodified _PVYVGRKV_ 0 0 0 ENST00000524233.1_1_8:101280952-101287235:-|nuORF ENST00000524233.1_1_8:101280952-101287235:-|nuORF ENST00000524233.1_1_8:101280952-101287235:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.281995 916.549437 0.12019 5.5203E-05 0.14111 6.4811E-05 0.26131 0.00012001 459.28197929795334 19.954 0.34472 18.557 18.379 18.723 -1.3966 0.050715 -0.00015668 NaN 0.0082765 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 787760 35137 10877 23652 23667 0.08782385376662205 PVYVGRKV 8 Unmodified _PVYVGRKV_ 0 0 0 ENST00000524233.1_1_8:101280952-101287235:-|nuORF ENST00000524233.1_1_8:101280952-101287235:-|nuORF ENST00000524233.1_1_8:101280952-101287235:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.281995 916.549437 -0.9093 -0.00041763 0.83613 0.00038402 -0.07317 -3.3606E-05 459.28241233582213 20.178 0.52148 18.543 18.295 18.816 -1.6351 0.036373 0.00048174 NaN 0.0082765 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 881550 35138 10877 23652 23667 0.08782385376662205 PWACPSVR 8 Unmodified _PWACPSVR_ 0 0 0 REV__ENST00000504818.5_1_4:41258993-41262665:+|nuORF REV__ENST00000504818.5_1_4:41258993-41262665:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22821044921875 2 458.228905 914.443257 NaN NaN NaN NaN NaN NaN NaN 95.252 1 91.061 90.561 91.561 -4.1911 0 0 0 0.23782 1 18176 18176 0.12286 0 1 + 35139 22467 23653 23668 34498 34498 -0.01738693460322338 PWAEVQSRL 9 Unmodified _PWAEVQSRL_ 0 0 0 ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant;ENSG00000181652|ENST00000639579|ATG9B ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79345703125 2 543.290548 1084.56654 0.45477 0.00024707 3.1742 0.0017245 3.629 0.0019716 543.7930408326881 73.016 0.34217 69.477 69.303 69.645 -3.5385 18 9 3 0 0 0 0.60805 1 13861 13861 12.532 2.3482 1 1942400 35140 254 23654 23669 34499 34499 0.027642611918054172 PWCCHLPLL 9 Unmodified _PWCCHLPLL_ 0 0 0 ENST00000220244.7_1_15:81241369-81241618:+|nuORF ENST00000220244.7_1_15:81241369-81241618:+|nuORF ENST00000220244.7_1_15:81241369-81241618:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2705078125 2 541.269716 1080.52488 NaN NaN NaN NaN NaN NaN NaN 13.215 1 12.094 11.594 12.594 -1.1206 0 0 0 0.23508 1 1649 1649 2.3027 0.65011 1 35141 8130 23655 23670 34500 34500 -0.012163340927372701 PWFHEFWQHRF 11 Unmodified _PWFHEFWQHRF_ 0 0 0 GRM5|p.Q356H|1|0.22|ENSG00000168959|chr11:88653247-88653247|T/A|missense_variant GRM5|p.Q356H|1|0.22|ENSG00000168959|chr11:88653247-88653247|T/A|missense_variant GRM5|p.Q356H|1|0.22|ENSG00000168959|chr11:88653247-88653247|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 539.5258178710938 3 539.58971 1615.7473 NaN NaN NaN NaN NaN NaN NaN 163.04 1 157.86 157.36 158.36 -5.1878 0 0 0 0.23698 1 31700 31700 0.08335 0.010087 1 35142 11866 23656 23671 34501 34501 -0.03594220431523354 PWGDKDHHHWG 11 Unmodified _PWGDKDHHHWG_ 0 0 0 REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2327575683594 3 457.870765 1370.59047 NaN NaN NaN NaN NaN NaN NaN 7.6472 1 6.6324 6.1324 7.1324 -1.0148 0 0 0 0.23698 1 640 640 0 0 1 + 35143 22805 23657 23672 34502 34502 -0.08000505321842866 PWGHPPAPG 9 Unmodified _PWGHPPAPG_ 0 0 0 REV__ENST00000446203.1_1_13:100060234-100060986:-|nuORF REV__ENST00000446203.1_1_13:100060234-100060986:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.226806640625 2 458.22722 914.439886 NaN NaN NaN NaN NaN NaN NaN 62.727 1 59.311 58.811 59.811 -3.4158 0 0 0 0.19636 1 11714 11714 2.4985 2.3756 1 + 35144 21758 23658 23673 34503 34503 -0.02075620242669629 PWKWMTWIY 9 Unmodified _PWKWMTWIY_ 0 0 0 REV__ENST00000461298.1_1_1:161483262-161483313:+|nuORF REV__ENST00000461298.1_1_1:161483262-161483313:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21783447265625 3 437.551205 1309.63179 -0.30824 -0.00013487 -0.86403 -0.00037806 -1.1723 -0.00051293 437.5508039310999 41.656 0.55113 39.021 38.71 39.262 -2.6348 27 15 2 0 0 0 0.8799 1 7804 7804 4.897 0.18109 1 2700600 + 35145 21892 23659 23674 34504 34504 -0.010644606066989581 PWQQYWRGYRQ 11 Unmodified _PWQQYWRGYRQ_ 0 0 0 ENST00000374514.7_1_1:24121362-24121572:+|nuORF ENST00000374514.7_1_1:24121362-24121572:+|nuORF ENST00000374514.7_1_1:24121362-24121572:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69189453125 3 523.25662 1566.74803 0.18646 9.7565E-05 -0.46029 -0.00024085 -0.27383 -0.00014329 523.256190540572 127.4 0.8307 127.4 126.85 127.68 0 49 23 3 0 0 0 0.89092 1 25099 25099 0.172 0 1 7314000 35146 9220 23660 23675 34505 34505 -0.012674257824755841 PWQVGRRVREW 11 Unmodified _PWQVGRRVREW_ 0 0 0 REV__ENST00000493195.5_1_1:159898873-159900045:-|nuORF REV__ENST00000493195.5_1_1:159898873-159900045:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2684631347656 3 490.26886 1467.78475 NaN NaN NaN NaN NaN NaN NaN 161.64 1 156.5 156 157 -5.1438 0 0 0 0.22632 1 31397 31397 0.026206 0 1 + 35147 22342 23661 23676 34506 34506 0.069568708341194 PWRCWWRRRQL 11 Unmodified _PWRCWWRRRQL_ 0 0 0 ENST00000398684.6_1_7:65579856-65579898:+|nuORF ENST00000398684.6_1_7:65579856-65579898:+|nuORF ENST00000398684.6_1_7:65579856-65579898:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7688598632812 3 548.293122 1641.85754 0.11673 6.4E-05 -0.65687 -0.00036016 -0.54015 -0.00029616 548.293829714225 142.25 0.10062 137.22 137.14 137.24 -5.0261 4 2 2 0 0 0 0.96227 1 27404 27404 0 0 1 1031500 35148 9486 23662 23677 34507 34507 0.06228301355872645 PWRHSWLKWRI 11 Unmodified _PWRHSWLKWRI_ 0 0 0 ENST00000583590.5_1_17:61869884-61875419:+|nuORF ENST00000583590.5_1_17:61869884-61875419:+|nuORF ENST00000583590.5_1_17:61869884-61875419:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2753295898438 3 522.293117 1563.85752 0.2013 0.00010514 -1.6991 -0.00088743 -1.4978 -0.00078229 522.6265341302741 135.8 0.17285 135.8 135.71 135.88 0 6 4 2 0 0 0 0.66124 1 26885 26885 0.00056442 0 1 1208300 35149 11516 23663 23678 34508 34508 0.09814624627529156 PWRRARRP 8 Unmodified _PWRRARRP_ 0 0 0 ENST00000409939.7_1_16:30381377-30381548:-|nuORF ENST00000409939.7_1_16:30381377-30381548:-|nuORF ENST00000409939.7_1_16:30381377-30381548:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.785888671875 2 547.825758 1093.63696 NaN NaN NaN NaN NaN NaN NaN 165.14 1 160.16 159.66 160.66 -4.9811 0 0 0 0.23312 1 32253 32253 6.2058 0 1 35150 9573 23664 23679 34509 34509 0.09389024090774001 PWRRRHKV 8 Unmodified _PWRRRHKV_ 0 0 0 ENST00000304877.17_2_6:125475035-125541268:+|nuORF ENST00000304877.17_2_6:125475035-125541268:+|nuORF ENST00000304877.17_2_6:125475035-125541268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.90380859375 3 378.896698 1133.66826 NaN NaN NaN NaN NaN NaN NaN 10.908 1 10.004 9.5036 10.504 -0.90401 0 0 0 0.21486 1 1405 1405 0 0 1 35151 8593 23665 23680 34510 34510 0.10677597124868043 PWRWQRRRGWR 11 Unmodified _PWRWQRRRGWR_ 0 0 0 ENST00000513117.1_1_5:6633573-6668378:+|nuORF ENST00000513117.1_1_5:6633573-6668378:+|nuORF ENST00000513117.1_1_5:6633573-6668378:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7832641601562 3 547.302898 1638.88686 0.18254 9.9904E-05 -4.1193 -0.0022545 -3.9367 -0.0021546 547.3008267554897 128.16 0.1778 123.34 123.27 123.45 -4.817 6 4 2 0 0 0 0.89135 1 24619 24619 0.00056442 0.00056442 1 843680 35152 10760 23666 23681 34511 34511 0.09297581696364432 PWRWRWRRWR 10 Unmodified _PWRWRWRRWR_ 0 0 0 ENST00000253814.5_1_5:141488387-141511833:+|nuORF ENST00000253814.5_1_5:141488387-141511833:+|nuORF ENST00000253814.5_1_5:141488387-141511833:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.77392578125 3 547.635988 1639.88614 NaN NaN NaN NaN NaN NaN NaN 53.162 1 53.162 52.662 53.662 0 0 0 0 2.8426 1 10119 10119 0.13989 0.13989 1 35153 8241 23667 23682 34512 34512 0.09178787047312653 PWSPAIRVLL 10 Unmodified _PWSPAIRVLL_ 0 0 0 nc|ENSG00000206562|Q8TCB7-2|METTL6 nc|ENSG00000206562|Q8TCB7-2|METTL6 nc|ENSG00000206562|Q8TCB7-2|METTL6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3196411132812 2 576.350409 1150.68626 NaN NaN NaN NaN NaN NaN NaN 160.14 1 154.89 154.39 155.39 -5.2526 0 0 0 0.22588 1 31078 31078 6.2058 1.8765 1 35154 12568 23668 23683 34513 34513 0.116948745363743 PWTRERRKRRQ 11 Unmodified _PWTRERRKRRQ_ 0 0 0 ENST00000409822.1_1_2:238486756-238499247:-|nuORF;ENST00000416106.1_1_2:238494070-238499247:-|nuORF ENST00000409822.1_1_2:238486756-238499247:-|nuORF ENST00000409822.1_1_2:238486756-238499247:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.684814453125 3 523.637946 1567.89201 -0.39001 -0.00020422 0.1753 9.1796E-05 -0.2147 -0.00011243 523.9731840177257 63.505 0.31344 60.089 59.973 60.286 -3.4158 9 8 2 0 0 0 0.66298 1 11868 11868 0.094841 0 1 980550 35155 9568 23669 23684 34514 34514 0.13077840768323767 PWTRERRKRRQ 11 Unmodified _PWTRERRKRRQ_ 0 0 0 ENST00000409822.1_1_2:238486756-238499247:-|nuORF;ENST00000416106.1_1_2:238494070-238499247:-|nuORF ENST00000409822.1_1_2:238486756-238499247:-|nuORF ENST00000409822.1_1_2:238486756-238499247:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 523.637946 1567.89201 -0.11484 -6.0134E-05 3.1835 0.001667 3.0686 0.0016069 523.9726004895513 63.099 0.20071 60.101 59.951 60.151 -2.9975 0.0058606 0.0029268 NaN 0.094841 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 598070 35156 9568 23669 23684 0.13077840768323767 PWWISAVV 8 Unmodified _PWWISAVV_ 0 0 0 REV__ENST00000372870.5_1_9:131122965-131123439:+|nuORF REV__ENST00000372870.5_1_9:131122965-131123439:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72589111328125 2 479.263271 956.511988 0.23545 0.00011284 -0.47529 -0.00022779 -0.23984 -0.00011495 479.26299151914657 103.49 0.80077 99.146 98.716 99.517 -4.346 35 22 2 0 0 0 0.97173 1 19857 19857 18.135 8.7875 1 2134700 + 35157 21036 23670 23685 34515 34515 0.03199294111027484 PYAERVYFLN 10 Unmodified _PYAERVYFLN_ 0 0 0 ENSG00000150637|ENST00000582621|CD226 ENSG00000150637|ENST00000582621|CD226 ENSG00000150637|ENST00000582621|CD226 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25335693359375 3 424.552151 1270.63462 0.0095982 4.0749E-06 -0.43522 -0.00018477 -0.42562 -0.0001807 424.5519389742339 24.835 0.40926 23.301 23.06 23.469 -1.5342 28 11 3 0 0 0 0.74977 1 4070 4070 5.7834 1.3773 1 2069800 35158 4830 23671 23686 34516 34516 0.010130860518074769 PYAERVYFLN 10 Unmodified _PYAERVYFLN_ 0 0 0 ENSG00000150637|ENST00000582621|CD226 ENSG00000150637|ENST00000582621|CD226 ENSG00000150637|ENST00000582621|CD226 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 424.552151 1270.63462 0.12011 5.0995E-05 -0.51139 -0.00021711 -0.39127 -0.00016612 424.5517785223399 23.327 0.38336 23.327 23.131 23.514 0 0.028468 -1.2041E-05 NaN 5.7834 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1111100 35159 4830 23671 23686 0.010130860518074769 PYAERVYFLN 10 Unmodified _PYAERVYFLN_ 0 0 0 ENSG00000150637|ENST00000582621|CD226 ENSG00000150637|ENST00000582621|CD226 ENSG00000150637|ENST00000582621|CD226 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 424.552151 1270.63462 0.92068 0.00039088 -1.203 -0.00051075 -0.28234 -0.00011987 424.5515862648733 24.975 0.34665 23.326 23.131 23.477 -1.6482 0.028266 -0.00089295 NaN 5.7834 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 806320 35160 4830 23671 23686 0.010130860518074769 PYAERVYFLN 10 Unmodified _PYAERVYFLN_ 0 0 0 ENSG00000150637|ENST00000582621|CD226 ENSG00000150637|ENST00000582621|CD226 ENSG00000150637|ENST00000582621|CD226 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 424.552151 1270.63462 -0.45397 -0.00019273 -0.057967 -2.461E-05 -0.51194 -0.00021734 424.5521897580364 25.092 0.41528 23.239 23.05 23.465 -1.8534 -0.059193 0.00056546 NaN 5.7834 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1432800 35161 4830 23671 23686 0.010130860518074769 PYAFRLCS 8 Unmodified _PYAFRLCS_ 0 0 0 REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7 REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7354736328125 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 155.45 1 150.2 149.7 150.7 -5.2526 0 0 0 0.22676 1 30147 30147 0.25148 0.20769 1 + 35162 16380 23672 23687 34517 34517 -0.020938266631105762 PYAFRLCS 8 Unmodified _PYAFRLCS_ 0 0 0 REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7 REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7354736328125 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 155.48 1 150.22 149.72 150.72 -5.2526 0 0 0 0.21323 1 30150 30150 14.582 5.2343 1 + 35163 16380 23672 23687 34518 34518 -0.020938266631105762 PYCEKNFCLS 10 Unmodified _PYCEKNFCLS_ 0 0 0 ENST00000517353.5_1_8:82627029-82645114:-|nuORF ENST00000517353.5_1_8:82627029-82645114:-|nuORF ENST00000517353.5_1_8:82627029-82645114:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2847900390625 2 602.262284 1202.51002 NaN NaN NaN NaN NaN NaN NaN 123.95 1 119.37 118.87 119.87 -4.5757 0 0 0 0.22588 1 24437 24437 10.074 0 1 35164 10794 23673 23688 34519 34519 -0.08313870751385366 PYDEKMTTIF 10 Unmodified _PYDEKMTTIF_ 0 0 0 tr|U7T313|U7T313_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00354PE=4SV=1 tr|U7T313|U7T313_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00354PE=4SV=1 tr|U7T313|U7T313_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00354PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.752197265625 2 622.797014 1243.57948 NaN NaN NaN NaN NaN NaN NaN 138.91 1 134.06 133.56 134.56 -4.8492 0 0 0 0.22588 1 26778 26778 6.2058 0 1 35165 26381 23674 23689 34520 34520 -0.032570885309951336 PYECPECSTLC 11 Unmodified _PYECPECSTLC_ 0 0 0 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7646484375 2 622.735242 1243.45593 NaN NaN NaN NaN NaN NaN NaN 139.67 1 134.72 134.22 135.22 -4.952 0 0 0 0.23264 1 26868 26868 6.2058 2.2614 1 35166 5823 23675 23690 34521 34521 -0.15605830965273526 PYECQLCGGKF 11 Unmodified _PYECQLCGGKF_ 0 0 0 nc|ENSG00000169635|Q96JB3-2|HIC2;ENSG00000169635|ENST00000407464|HIC2 nc|ENSG00000169635|Q96JB3-2|HIC2 nc|ENSG00000169635|Q96JB3-2|HIC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7750854492188 2 622.775559 1243.53657 NaN NaN NaN NaN NaN NaN NaN 132.4 1 127.76 127.26 128.26 -4.6399 0 0 0 0.23018 1 26099 26099 8.1555 1.9497 1 35167 5996 23676 23691 34522 34522 -0.07546181860061552 PYECQLCGGKF 11 Unmodified _PYECQLCGGKF_ 0 0 0 nc|ENSG00000169635|Q96JB3-2|HIC2;ENSG00000169635|ENST00000407464|HIC2 nc|ENSG00000169635|Q96JB3-2|HIC2 nc|ENSG00000169635|Q96JB3-2|HIC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7750854492188 2 622.775559 1243.53657 NaN NaN NaN NaN NaN NaN NaN 136.28 1 131.38 130.88 131.88 -4.8951 0 0 0 0.23018 1 26187 26187 8.1555 1.9497 1 35168 5996 23676 23691 34523 34523 -0.07546181860061552 PYEFDFYL 8 Unmodified _PYEFDFYL_ 0 0 0 nc|ENSG00000126070|Q9H9G7-2|AGO3;ENSG00000126070|ENST00000373191|AGO3 nc|ENSG00000126070|Q9H9G7-2|AGO3 nc|ENSG00000126070|Q9H9G7-2|AGO3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.767822265625 2 547.247483 1092.48041 0.25709 0.00014069 -1.5672 -0.00085766 -1.3101 -0.00071697 547.7467396576839 131.08 0.16978 126.3 126.22 126.39 -4.7725 5 4 2 0 0 0 0.97994 1 25238 25238 15.768 1.1865 1 815350 35169 3415 23677 23692 34524 34524 -0.06212743433570722 PYEFPEESP 9 Unmodified _PYEFPEESP_ 0 0 0 AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant;AMPD2|p.P300Lfs*63|2|0.28|ENSG00000116337|chr1:109627188-109627188|C/-|frameshift_variant;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000486282.6_1_1:110163774-110168851:+|nuORF;nc|ENSG00000116337|Q01433-4|AMPD2 AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7664794921875 2 547.73748 1093.46041 0.2252 0.00012335 -0.57751 -0.00031632 -0.3523 -0.00019297 547.7371561516246 15.106 0.48689 15.106 14.807 15.294 0 28 13 3 0 0 0 0.68435 1 2247 2247 7.2892 0.56607 1 1202000 35170 150 23678 23693 34525 34525 -0.0825853916419419 PYEHECNPY 9 Unmodified _PYEHECNPY_ 0 0 0 CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant;ENSG00000121005|ENST00000262207|CRISPLD1;ENST00000517786.1_1_8:75924682-75927106:+|nuORF CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3364868164062 2 576.226756 1150.43896 NaN NaN NaN NaN NaN NaN NaN 131.2 1 131.2 130.7 131.7 0 0 0 0 0.23508 1 25936 25936 4.756 0.42677 1 35171 725 23679 23694 34526 34526 -0.13024247464545624 PYEHECNPY 9 Unmodified _PYEHECNPY_ 0 0 0 CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant;ENSG00000121005|ENST00000262207|CRISPLD1;ENST00000517786.1_1_8:75924682-75927106:+|nuORF CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant CRISPLD1|p.H362Efs*30|1|0.04|ENSG00000121005|chr8:75017406-75017407|-/GAGGA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.316162109375 2 576.226756 1150.43896 0.17364 0.00010006 -1.5384 -0.00088647 -1.3648 -0.00078641 576.7269397545228 137.4 0.17931 132.48 132.4 132.58 -4.9216 6 4 2 0 0 0 0.86532 1 26411 26411 8.5933 1.304 1 4413400 35172 725 23679 23694 34527 34527 -0.13024247464545624 PYEHTEHKGF 10 Unmodified _PYEHTEHKGF_ 0 0 0 REV__tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1 REV__tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.765869140625 2 622.78837 1243.56219 NaN NaN NaN NaN NaN NaN NaN 131.9 1 131.9 131.4 132.4 0 0 0 0 0.22588 1 26069 26069 7.2892 2.5332 1 + 35173 25460 23680 23695 34528 34528 -0.049852480217850825 PYERLLREE 9 Unmodified _PYERLLREE_ 0 0 0 REV__SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant REV__SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2989501953125 2 602.81967 1203.62479 0.38906 0.00023453 2.2467 0.0013543 2.6357 0.0015889 602.8209876813305 130.56 0.14383 130.56 130.47 130.62 0 5 3 2 0 0 0 0.87258 1 25818 25818 4.3292 1.8308 1 1555200 + 35174 17465 23681 23696 34529 34529 0.031118980464270862 PYESAFFAY 9 Unmodified _PYESAFFAY_ 0 0 0 REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2 REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.766845703125 2 547.745108 1093.47566 NaN NaN NaN NaN NaN NaN NaN 132.47 1 127.61 127.11 128.11 -4.8527 0 0 0 0.23508 1 25443 25443 8.5933 1.8701 1 + 35175 17197 23682 23697 34530 34530 -0.0673362757634095 PYEVLIGDLKG 11 Unmodified _PYEVLIGDLKG_ 0 0 0 tr|U7T4U1|U7T4U1_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00553PE=3SV=1 tr|U7T4U1|U7T4U1_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00553PE=3SV=1 tr|U7T4U1|U7T4U1_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00553PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.27392578125 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 127.62 1 127.62 127.12 128.12 0 0 0 0 0.23018 1 25190 25190 8.1555 0.54658 1 35176 26435 23683 23698 34531 34531 0.06146836991752025 PYEYGSSYTH 10 Unmodified _PYEYGSSYTH_ 0 0 0 nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3;ENSG00000198300|ENST00000326441|PEG3 nc|ENSG00000198300|Q9GZU2-2|PEG3 nc|ENSG00000198300|Q9GZU2-2|PEG3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2734985351562 2 602.251286 1202.48802 NaN NaN NaN NaN NaN NaN NaN 128.4 1 123.66 123.16 124.16 -4.7408 0 0 0 0.22588 1 24706 24706 6.7232 0 1 35177 7442 23684 23699 34532 34532 -0.10512635903933187 PYFSGSYGGYY 11 Unmodified _PYFSGSYGGYY_ 0 0 0 REV__tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1 REV__tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7645263671875 2 630.764029 1259.5135 NaN NaN NaN NaN NaN NaN NaN 82.91 1 79.037 78.537 79.537 -3.8736 0 0 0 0.22632 1 15746 15746 0.026206 0.022825 1 + 35178 24917 23685 23700 34533 34533 -0.10587161381499754 PYHPSLLPY 9 Unmodified _PYHPSLLPY_ 0 0 0 nc|ENSG00000137075|Q9H0F5-5|RNF38;nc|ENSG00000137075|Q9H0F5-3|RNF38;nc|ENSG00000137075|Q9H0F5-4|RNF38;nc|ENSG00000137075|Q9H0F5-2|RNF38;ENSG00000137075|ENST00000259605|RNF38 nc|ENSG00000137075|Q9H0F5-5|RNF38 nc|ENSG00000137075|Q9H0F5-5|RNF38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78173828125 2 543.784567 1085.55458 -0.27859 -0.00015149 -2.831 -0.0015395 -3.1096 -0.001691 543.7831455826388 108.54 0.66035 104.22 104.01 104.67 -4.32 24 18 2 0 0 0 0.52414 1 21389 21389 18.135 1.1927 1 1657100 35179 4064 23686 23701 34534 34534 0.015226444486188484 PYHPSLLPY 9 Unmodified _PYHPSLLPY_ 0 0 0 nc|ENSG00000137075|Q9H0F5-5|RNF38;nc|ENSG00000137075|Q9H0F5-3|RNF38;nc|ENSG00000137075|Q9H0F5-4|RNF38;nc|ENSG00000137075|Q9H0F5-2|RNF38;ENSG00000137075|ENST00000259605|RNF38 nc|ENSG00000137075|Q9H0F5-5|RNF38 nc|ENSG00000137075|Q9H0F5-5|RNF38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7824096679688 2 543.784567 1085.55458 -0.11617 -6.3173E-05 -2.3742 -0.0012911 -2.4904 -0.0013542 543.7832938090773 108.74 0.76752 104.29 103.98 104.75 -4.4518 29 21 2 0 0 0 0.52414 1 20834 20834 18.135 1.1927 1 2102700 35180 4064 23686 23701 34535 34535 0.015226444486188484 PYIAQSIQ 8 Unmodified _PYIAQSIQ_ 0 0 0 REV__ENST00000471613.1_1_1:161068499-161069114:+|nuORF REV__ENST00000471613.1_1_1:161068499-161069114:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24822998046875 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 6.0154 1 4.9754 4.4754 5.4754 -1.04 0 0 0 0.21486 1 368 368 0.79363 0 1 + 35181 22043 23687 23702 34536 34536 0.01858096006139931 PYIVVAFQE 9 Unmodified _PYIVVAFQE_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-3|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2827758789062 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 133.42 1 128.6 128.1 129.1 -4.8175 0 0 0 0.23508 1 25679 25679 7.9102 0.62092 1 35182 1016 23688 23703 34537 34537 0.024552247287829232 PYKGLRTTKRR 11 Unmodified _PYKGLRTTKRR_ 0 0 0 REV__CLCN4|p.N387Ifs*36|1|0.43|ENSG00000073464|chrX:10208356-10208356|C/-|frameshift_variant REV__CLCN4|p.N387Ifs*36|1|0.43|ENSG00000073464|chrX:10208356-10208356|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 459.2813720703125 3 459.280877 1374.8208 NaN NaN NaN NaN NaN NaN NaN 89.189 1 85.145 84.645 85.645 -4.0443 0 0 0 0.22632 1 16995 16995 0.11104 0.079632 1 + 35183 13443 23689 23704 34538 34538 0.14838328010932855 PYKGYIWNY 9 Unmodified _PYKGYIWNY_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1;ENST00000503171.5_1_4:106317436-106374979:-|nuORF;ENST00000499847.6_1_4:106367518-106395207:-|nuORF;ENST00000506815.5_3_4:106326917-106395140:-|nuORF;ENST00000502833.5_1_4:106344467-106395207:-|nuORF;ENST00000509426.5_1_4:106320018-106395207:-|nuORF;nc|ENSG00000138777|Q9H2U2-3|PPA2;ENSG00000138777|ENST00000341695|PPA2;nc|ENSG00000138777|Q9H2U2-2|PPA2;PPA2-YLPM1|2|fusion;PPA2-YLPM1|1|fusion ENSG00000180817|ENST00000373232|PPA1;PPA2-YLPM1|2|fusion PPA2-YLPM1|2|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.290283203125 2 602.295299 1202.57605 NaN NaN NaN NaN NaN NaN NaN 144.65 1 144.65 144.15 145.15 0 0 0 0 0.23508 1 28904 28904 12.532 1.7076 1 35184 6695;12816 23690 23705 34539 34539 -0.017139705226554725 PYKGYIWNY 9 Unmodified _PYKGYIWNY_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1;ENST00000503171.5_1_4:106317436-106374979:-|nuORF;ENST00000499847.6_1_4:106367518-106395207:-|nuORF;ENST00000506815.5_3_4:106326917-106395140:-|nuORF;ENST00000502833.5_1_4:106344467-106395207:-|nuORF;ENST00000509426.5_1_4:106320018-106395207:-|nuORF;nc|ENSG00000138777|Q9H2U2-3|PPA2;ENSG00000138777|ENST00000341695|PPA2;nc|ENSG00000138777|Q9H2U2-2|PPA2;PPA2-YLPM1|2|fusion;PPA2-YLPM1|1|fusion ENSG00000180817|ENST00000373232|PPA1;PPA2-YLPM1|2|fusion PPA2-YLPM1|2|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2942504882812 2 602.295299 1202.57605 NaN NaN NaN NaN NaN NaN NaN 132.63 1 127.77 127.27 128.27 -4.8527 0 0 0 0.23508 1 25476 25476 8.5933 2.3875 1 35185 6695;12816 23690 23705 34540 34540 -0.017139705226554725 PYKKYWLFYDF 11 Unmodified _PYKKYWLFYDF_ 0 0 0 REV__nc|ENSG00000211810|P04437|TRAV29DV5 REV__nc|ENSG00000211810|P04437|TRAV29DV5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.39599609375 2 785.39247 1568.77039 NaN NaN NaN NaN NaN NaN NaN 129.54 1 129.54 129.04 130.04 0 0 0 0 0.23698 1 25591 25591 1.4819 0.15237 1 + 35186 24256 23691 23706 34541 34541 0.008753608425877246 PYKKYWLFYDF 11 Unmodified _PYKKYWLFYDF_ 0 0 0 REV__nc|ENSG00000211810|P04437|TRAV29DV5 REV__nc|ENSG00000211810|P04437|TRAV29DV5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3967895507812 2 785.39247 1568.77039 NaN NaN NaN NaN NaN NaN NaN 131.21 1 131.21 130.71 131.71 0 0 0 0 0.23698 1 25939 25939 1.4819 0 1 + 35187 24256 23691 23706 34542 34542 0.008753608425877246 PYKKYWLFYDF 11 Unmodified _PYKKYWLFYDF_ 0 0 0 REV__nc|ENSG00000211810|P04437|TRAV29DV5 REV__nc|ENSG00000211810|P04437|TRAV29DV5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3924560546875 2 785.39247 1568.77039 NaN NaN NaN NaN NaN NaN NaN 178.7 1 173.91 173.41 174.41 -4.7898 0 0 0 0.23698 1 36561 36561 0 0 1 + 35188 24256 23691 23706 34543 34543 0.008753608425877246 PYLEKDKDIQK 11 Unmodified _PYLEKDKDIQK_ 0 0 0 tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1 tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1 tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2342224121094 3 459.58552 1375.73473 0.16344 7.5114E-05 -0.13527 -6.217E-05 0.028165 1.2944E-05 459.9197343022368 115.26 0.6427 110.71 110.36 111.01 -4.555 46 17 3 0 0 0 0.60781 1 22108 22108 5.4027 0 1 3360700 35189 26220 23692 23707 34544 34544 0.06189278594933967 PYLKFTQSYD 10 Unmodified _PYLKFTQSYD_ 0 0 0 ENST00000587483.5_1_17:42391821-42393770:+|nuORF;ENST00000593079.1_1_17:42392127-42392978:+|nuORF;nc|ENSG00000108309|Q59EK9-4|RUNDC3A;ENST00000590834.5_1_17:42386140-42393891:+|nuORF;nc|ENSG00000108309|Q59EK9-2|RUNDC3A;nc|ENSG00000108309|Q59EK9-3|RUNDC3A;ENSG00000108309|ENST00000426726|RUNDC3A ENST00000587483.5_1_17:42391821-42393770:+|nuORF ENST00000587483.5_1_17:42391821-42393770:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7493896484375 2 631.308603 1260.60265 1.2374 0.00078117 -2.2885 -0.0014447 -1.0511 -0.00066356 631.809277171322 119.58 0.17339 115.05 114.91 115.08 -4.5221 6 4 2 0 0 0 0.90091 1 23574 23574 6.2058 0 1 2115700 35190 11563 23693 23708 34545 34545 -0.017223264219865086 PYLVILLTY 9 Unmodified _PYLVILLTY_ 0 0 0 REV__HACD2|p.F172L|1|0.05|ENSG00000206527|chr3:123500681-123500681|G/T|missense_variant REV__HACD2|p.F172L|1|0.05|ENSG00000206527|chr3:123500681-123500681|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7928466796875 2 547.828443 1093.64233 NaN NaN NaN NaN NaN NaN NaN 132.29 1 127.49 126.99 127.99 -4.799 0 0 0 0.23048 1 25469 25469 14.582 8.2276 1 + 35191 23600 23694 23709 34546 34546 0.09925845319389737 PYMANEYNFQY 11 Unmodified _PYMANEYNFQY_ 0 0 0 nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1 nc|ENSG00000136731|Q9NYU2-2|UGGT1 nc|ENSG00000136731|Q9NYU2-2|UGGT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2548522949219 3 480.53606 1438.58635 -0.022871 -1.099E-05 0.37961 0.00018241 0.35673 0.00017142 480.8699930177033 126.07 0.60078 126.07 125.72 126.32 0 35 16 3 0 0 0 0.79428 1 24906 24906 4.4062 0.56024 1 2636800 35192 4034 23695 23710 34547 34547 -0.11539775650408046 PYMHALAA 8 Unmodified _PYMHALAA_ 0 0 0 nc|ENSG00000130005|Q14353-2|GAMT;GAMT|p.V165Rfs*26|1|0.4|ENSG00000130005|chr19:1398994-1398995|-/C|frameshift_variant;ENSG00000130005|ENST00000252288|GAMT nc|ENSG00000130005|Q14353-2|GAMT nc|ENSG00000130005|Q14353-2|GAMT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21673583984375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 117.46 1 117.46 116.96 117.96 0 0 0 0 0.21486 1 23136 23136 6.3541 0 1 35193 12316 23696 23711 34548 34548 -0.019854982088986617 PYNKKIKLEK 10 Unmodified _PYNKKIKLEK_ 0 0 0 REV__SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant REV__SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7566528320312 2 630.887355 1259.76016 NaN NaN NaN NaN NaN NaN NaN 118.86 1 114.25 113.75 114.75 -4.6106 0 0 0 0.22588 1 22809 22809 1.8442 0 1 + 35194 24728 23697 23712 34549 34549 0.14066797908003537 PYPCQNGAQCY 11 Unmodified _PYPCQNGAQCY_ 0 0 0 JAG1|p.N532Y|1|0.35|ENSG00000101384|chr20:10648086-10648086|T/A|missense_variant JAG1|p.N532Y|1|0.35|ENSG00000101384|chr20:10648086-10648086|T/A|missense_variant JAG1|p.N532Y|1|0.35|ENSG00000101384|chr20:10648086-10648086|T/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7534790039062 2 622.247166 1242.47978 0.39197 0.0002439 2.5831 0.0016073 2.9751 0.0018512 622.2480460122252 132.81 0.17831 128.01 127.9 128.08 -4.799 6 4 2 0 0 0 0.78079 1 25560 25560 6.2058 0.44535 1 1065200 35195 11968 23698 23713 34550 34550 -0.13176229416558272 PYPDTECVY 9 Unmodified _PYPDTECVY_ 0 0 0 nc|ENSG00000163382|Q8NCW5-2|NAXE;ENSG00000163382|ENST00000368235|NAXE nc|ENSG00000163382|Q8NCW5-2|NAXE nc|ENSG00000163382|Q8NCW5-2|NAXE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79541015625 2 543.726058 1085.43756 NaN NaN NaN NaN NaN NaN NaN 82.109 1 78.235 77.735 78.735 -3.8736 0 0 0 0.23508 1 15595 15595 5.2307 0.90143 1 35196 5422 23699 23714 34551 34551 -0.10173881553305364 PYPMKLEGFY 10 Unmodified _PYPMKLEGFY_ 0 0 0 REV__tr|U7SX92|U7SX92_FUSNUSuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00915PE=4SV=1 REV__tr|U7SX92|U7SX92_FUSNUSuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00915PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7769165039062 2 622.804642 1243.59473 NaN NaN NaN NaN NaN NaN NaN 134.98 1 130.08 129.58 130.58 -4.8951 0 0 0 0.22588 1 25926 25926 7.9102 1.7044 1 + 35197 25214 23700 23715 34552 34552 -0.01732176943119157 PYQCEYCL 8 Unmodified _PYQCEYCL_ 0 0 0 ZNF148|p.K284Nfs*2|1|0.43|ENSG00000163848|chr3:125233874-125233874|T/-|frameshift_variant;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ENSG00000163848|ENST00000360647|ZNF148 ZNF148|p.K284Nfs*2|1|0.43|ENSG00000163848|chr3:125233874-125233874|T/-|frameshift_variant ZNF148|p.K284Nfs*2|1|0.43|ENSG00000163848|chr3:125233874-125233874|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 509.69793701171875 2 509.704071 1017.39359 NaN NaN NaN NaN NaN NaN NaN 131.19 1 126.35 125.85 126.85 -4.8355 0 0 0 0.22934 1 25192 25192 0.62683 0 1 35198 5472 23701 23716 34553 34553 -0.11441189251297601 PYQFTYVDIK 10 Unmodified _PYQFTYVDIK_ 0 0 0 ENST00000479727.1_1_1:224585697-224586694:-|nuORF ENST00000479727.1_1_1:224585697-224586694:-|nuORF ENST00000479727.1_1_1:224585697-224586694:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 637.3255615234375 2 637.326796 1272.63904 NaN NaN NaN NaN NaN NaN NaN 54.751 1 51.867 51.367 52.367 -2.8837 0 0 0 0.22583 1 10459 10459 13.906 4.5229 1 35199 10347 23702 23717 34554 34554 0.013625504747096784 PYRRRRFPP 9 Unmodified _PYRRRRFPP_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7733154296875 2 622.859798 1243.70504 NaN NaN NaN NaN NaN NaN NaN 133.11 1 128.47 127.97 128.97 -4.6399 0 0 0 0.23508 1 26242 26242 7.9102 0.3012 1 35200 1365 23703 23718 34555 34555 0.09293848950778738 PYSHPSSY 8 Unmodified _PYSHPSSY_ 0 0 0 NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant;NIPBL|p.K603Sfs*11|2|0.29|ENSG00000164190|chr5:36984981-36984981|A/-|frameshift_variant;NIPBL|p.R505Efs*35|1|0.19|ENSG00000164190|chr5:36984687-36984687|A/-|frameshift_variant NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.13140869140625 3 313.139859 936.397747 NaN NaN NaN NaN NaN NaN NaN 178.52 1 173.65 173.15 174.15 -4.8686 0 0 0 0.21486 1 35542 35542 0.40072 0 1 35201 5523 23704 23719 34556 34556 -0.07299640441715383 PYSSSRTPSI 10 Unmodified _PYSSSRTPSI_ 0 0 0 nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2 nc|ENSG00000169862|Q9UQB3-2|CTNND2 nc|ENSG00000169862|Q9UQB3-2|CTNND2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7767333984375 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 130.1 1 130.1 129.6 130.6 0 0 0 0 0.22588 1 25707 25707 10.824 1.4765 1 35202 6014 23705 23720 34557 34557 -0.0026405277030789875 PYTFVSNSC 9 Unmodified _PYTFVSNSC_ 0 0 0 REV__STAC|p.R252C|1|0.36|ENSG00000144681|chr3:36493217-36493217|C/T|missense_variant REV__STAC|p.R252C|1|0.36|ENSG00000144681|chr3:36493217-36493217|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 509.2176513671875 2 509.220943 1016.42733 NaN NaN NaN NaN NaN NaN NaN 162.87 1 157.72 157.22 158.22 -5.1438 0 0 0 0.19638 1 31662 31662 0.12781 0 1 + 35203 24742 23706 23721 34558 34558 -0.08022444487880875 PYTVTQEMI 9 Unmodified _PYTVTQEMI_ 0 0 0 REV__PRKCG|p.F614Sfs*41|1|0.2|ENSG00000126583|chr19:53906389-53906389|T/-|frameshift_variant REV__PRKCG|p.F614Sfs*41|1|0.2|ENSG00000126583|chr19:53906389-53906389|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2655639648438 2 541.26535 1080.51615 0.3157 0.00017088 0.17216 9.3184E-05 0.48786 0.00026406 541.2654511817445 149.93 0.73601 145.19 144.73 145.46 -4.7323 27 20 2 0 0 0 0.55979 1 29710 29710 15.847 4.2069 1 4819200 + 35204 15859 23707 23722 34559 34559 -0.02089029248213592 PYWFKKMENIQ 11 Unmodified _PYWFKKMENIQ_ 0 0 0 nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant nc|ENSG00000101596|A6NHR9-2|SMCHD1 nc|ENSG00000101596|A6NHR9-2|SMCHD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.37255859375 2 742.373755 1482.73296 NaN NaN NaN NaN NaN NaN NaN 126.49 1 121.87 121.37 122.37 -4.6172 0 0 0 0.23634 1 24938 24938 3.2813 1.7994 1 35205 2076 23708 23723 34560 34560 0.010899463053647196 QAALSRHEAI 10 Unmodified _QAALSRHEAI_ 0 0 0 REV__nc|ENSG00000152404|Q2TBE0-2|CWF19L2 REV__nc|ENSG00000152404|Q2TBE0-2|CWF19L2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7760620117188 2 548.298904 1094.58326 -0.33787 -0.00018525 0.025671 1.4075E-05 -0.3122 -0.00017118 548.2989187640267 23.497 0.38263 21.709 21.494 21.876 -1.7886 19 10 3 0 0 0 0.88533 1 3794 3794 8.7454 0 1 1372600 + 35206 13622 23709 23724 34561 34561 0.03974762077768901 QAAVDVEW 8 Unmodified _QAAVDVEW_ 0 0 0 REV__nc|ENSG00000025770|Q6IBW4-5|NCAPH2 REV__nc|ENSG00000025770|Q6IBW4-5|NCAPH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2444152832031 2 459.2218 916.429047 -0.0094097 -4.3212E-06 0.17796 8.1725E-05 0.16855 7.7404E-05 459.22183041284734 50.935 0.73218 47.89 47.494 48.226 -3.0453 57 20 4 0 0 0 8448 1 9379 9379 6.2058 6.0829 1 15863000 + 35207 14002 23710 23725 34562 34562 -0.03251067407620667 QACDFCMQWE 10 Unmodified _QACDFCMQWE_ 0 0 0 REV__MYO18B|p.R1521C|1|0.72|ENSG00000133454|chr22:25895173-25895173|C/T|missense_variant REV__MYO18B|p.R1521C|1|0.72|ENSG00000133454|chr22:25895173-25895173|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7662353515625 2 630.727751 1259.44095 NaN NaN NaN NaN NaN NaN NaN 160 1 160 159.5 160.5 0 0 0 0 2.8426 1 32126 32126 0 0 1 + 35208 23901 23711 23726 34563 34563 -0.17839278042583828 QADAQDPAQ 9 Unmodified _QADAQDPAQ_ 0 0 0 REV__ENST00000493635.1_1_6:36981758-36982189:+|nuORF REV__ENST00000493635.1_1_6:36981758-36982189:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1427001953125 3 315.142039 942.404288 -0.74335 -0.00023426 2.453 0.00077306 1.7097 0.0005388 315.1432744665695 57.824 0.28052 57.824 57.614 57.894 0 9 7 2 0 0 0 0.62689 1 11025 11025 0.029283 0 1 342140 + 35209 16873 23712 23727 34564 34564 -0.0692174728100099 QADETRSL 8 Unmodified _QADETRSL_ 0 0 0 ENST00000305409.2_1_2:224461986-224462145:-|nuORF ENST00000305409.2_1_2:224461986-224462145:-|nuORF ENST00000305409.2_1_2:224461986-224462145:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2281494140625 2 460.227613 918.440674 0.86401 0.00039764 -1.2571 -0.00057854 -0.39307 -0.0001809 460.2273810414126 24.261 0.52726 22.707 22.46 22.987 -1.5532 20 14 2 0 0 0 0.49096 2 4196 4196;4214 34.402 0 1 763170 35210 8602 23713 23728 34565;34566 34565 -0.021808703842907562 QADFSVLHY 9 Unmodified _QADFSVLHY_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2640380859375 2 540.261456 1078.50836 0.39812 0.00021509 -0.57307 -0.00030961 -0.17495 -9.4521E-05 540.2611013389728 122.84 0.70759 118.27 117.82 118.52 -4.5757 51 19 4 0 0 0 0.095051 4 24183 24165;24178;24183;24228 57.471 38.214 1 10504000 35211 2300 23714 23729 34567;34568;34569;34570 34569 -0.027754204534630844 QADFSVLHY 9 Unmodified _QADFSVLHY_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2639770507812 2 540.261456 1078.50836 0.59187 0.00031976 -1.3342 -0.00072084 -0.74237 -0.00040107 540.2608731065461 122.94 0.96713 118.21 117.57 118.54 -4.731 59 27 3 0 0 0 0.11447 2 23588 23588;23633 50.855 33.913 1 8434800 35212 2300 23714 23729 34571;34572 34571 -0.027754204534630844 QADFSVLHY 9 Unmodified _QADFSVLHY_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2643432617188 2 540.261456 1078.50836 0.37696 0.00020366 -1.2467 -0.00067353 -0.86972 -0.00046988 540.2603582539058 122.69 1.2247 118.16 117.8 119.02 -4.5305 71 34 4 0 0 0 0.22334 1 23657 23657 36.044 17.898 1 7050700 35213 2300 23714 23729 34573 34573 -0.027754204534630844 QADFSVLHY 9 Unmodified _QADFSVLHY_ 0 0 0 nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-4|MYH14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.261456 1078.50836 0.27004 0.00014589 -0.35462 -0.00019159 -0.084578 -4.5694E-05 540.261177669718 118.18 0.81591 118.18 117.69 118.5 0 -0.019324 0.00037222 NaN 57.471 37 22 2 NaN NaN NaN NaN 0 NaN NaN 0 6377300 35214 2300 23714 23729 -0.027754204534630844 QADIARMLY 9 Unmodified _QADIARMLY_ 0 0 0 ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant;ZMYND11|p.L498Afs*3|1|0.3|ENSG00000015171|chr10:248592-248602|GAGAAGCTCTG/-|frameshift_variant;nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2797241210938 2 540.778959 1079.54336 0.28295 0.00015301 -0.68947 -0.00037285 -0.40652 -0.00021984 540.7785970081059 118.86 0.67087 118.86 118.43 119.1 0 30 18 2 0 0 0 0.029139 3 23424 23375;23424;23445 82.529 54.901 1 5335400 35215 1108 23715 23730 34574;34575;34576 34575 0.006774990828262162 QADIARMLY 9 Unmodified _QADIARMLY_ 0 0 0 ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant;ZMYND11|p.L498Afs*3|1|0.3|ENSG00000015171|chr10:248592-248602|GAGAAGCTCTG/-|frameshift_variant;nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2803344726562 2 540.778959 1079.54336 0.39225 0.00021212 -0.44589 -0.00024113 -0.053631 -2.9003E-05 540.7786602208187 123.29 0.78353 118.71 118.35 119.13 -4.5757 47 21 3 0 0 0 0.0045467 3 24304 24282;24304;24348 114.65 70.791 1 8348600 35216 1108 23715 23730 34577;34578;34579 34578 0.006774990828262162 QADIARMLY 9 Unmodified _QADIARMLY_ 0 0 0 ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant;ZMYND11|p.L498Afs*3|1|0.3|ENSG00000015171|chr10:248592-248602|GAGAAGCTCTG/-|frameshift_variant;nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2808227539062 2 540.778959 1079.54336 0.53556 0.00028962 -0.40997 -0.0002217 0.12559 6.7915E-05 540.7786781104477 123.46 0.73999 118.73 118.4 119.14 -4.731 51 20 3 0 0 0 0.010532 4 23700 23653;23700;23735;23763 103.35 67.226 1 8292500 35217 1108 23715 23730 34580;34581;34582;34583 34581 0.006774990828262162 QADIARMLY 9 Unmodified _QADIARMLY_ 0 0 0 ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant;ZMYND11|p.L498Afs*3|1|0.3|ENSG00000015171|chr10:248592-248602|GAGAAGCTCTG/-|frameshift_variant;nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant ZMYND11|p.K345Rfs*43|1|0.18|ENSG00000015171|chr10:246845-246845|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2803344726562 2 540.778959 1079.54336 0.36178 0.00019564 -0.43882 -0.00023731 -0.077049 -4.1666E-05 540.7786914050489 123.3 0.79158 118.71 118.34 119.13 -4.5926 52 22 3 0 0 0 0.015957 2 23767 23718;23767 96.367 68.738 1 7827800 35218 1108 23715 23730 34584;34585 34585 0.006774990828262162 QADLINELY 9 Unmodified _QADLINELY_ 0 0 0 USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant;nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47 USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant USP47|p.G1121Efs*22|2|0.29|ENSG00000170242|chr11:11948505-11948505|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2703857421875 2 539.774396 1077.53424 0.31641 0.00017079 -0.063979 -3.4534E-05 0.25243 0.00013626 539.7742989489119 153.29 0.81593 148.52 148.08 148.9 -4.7684 51 22 4 0 0 0 0.60061 1 30453 30453 13.042 1.5478 1 12274000 35219 6050 23716 23731 34586 34586 -0.0014257100183385774 QADLSLWS 8 Unmodified _QADLSLWS_ 0 0 0 ENST00000409993.6_1_11:118967515-118967695:-|nuORF ENST00000409993.6_1_11:118967515-118967695:-|nuORF ENST00000409993.6_1_11:118967515-118967695:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2279052734375 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 22.831 1 22.831 22.331 23.331 0 0 0 0 0.20294 1 3872 3872 23.148 0 1 35220 9575 23717 23732 34587 34587 -0.01778780890560938 QADMRDVDMY 10 Unmodified _QADMRDVDMY_ 0 0 0 ENST00000504416.5_1_5:127493760-127503560:+|nuORF;ENST00000509616.1_1_5:127493760-127507455:+|nuORF;SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2 ENST00000504416.5_1_5:127493760-127503560:+|nuORF ENST00000504416.5_1_5:127493760-127503560:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7584838867188 2 622.25773 1242.50091 0.95455 0.00059398 -1.1053 -0.0006878 -0.15077 -9.382E-05 622.2570815259359 77.224 0.53086 73.761 73.439 73.97 -3.4633 25 14 3 0 0 0 0.33865 2 15092 15051;15092 34.932 10.911 1 1435500 35221 1338 23718 23733 34588;34589 34589 -0.11064264107699273 QADMRDVDMY 10 Unmodified _QADMRDVDMY_ 0 0 0 ENST00000504416.5_1_5:127493760-127503560:+|nuORF;ENST00000509616.1_1_5:127493760-127507455:+|nuORF;SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2 ENST00000504416.5_1_5:127493760-127503560:+|nuORF ENST00000504416.5_1_5:127493760-127503560:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7650146484375 2 622.25773 1242.50091 0.26503 0.00016492 0.17777 0.00011062 0.4428 0.00027553 622.2579919468153 77.546 0.49986 73.779 73.609 74.109 -3.7664 22 13 2 0 0 0 0.38172 3 14669 14669;14700;14745 32.037 18.995 1 1479700 35222 1338 23718 23733 34590;34591;34592 34590 -0.11064264107699273 QADMRDVDMY 10 Unmodified _QADMRDVDMY_ 0 0 0 ENST00000504416.5_1_5:127493760-127503560:+|nuORF;ENST00000509616.1_1_5:127493760-127507455:+|nuORF;SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant;SLC12A2|p.P1171Sfs*18|1|0.38|ENSG00000064651|chr5:128186498-128186499|-/TC|frameshift_variant;nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2 ENST00000504416.5_1_5:127493760-127503560:+|nuORF ENST00000504416.5_1_5:127493760-127503560:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7640991210938 2 622.25773 1242.50091 0.28428 0.0001769 0.4787 0.00029787 0.76298 0.00047477 622.2575623481555 77.455 0.45091 73.796 73.503 73.954 -3.6588 18 12 2 0 0 0 0.47533 1 14728 14728 26.021 10.772 1 1270300 35223 1338 23718 23733 34593 34593 -0.11064264107699273 QAEKVVTGP 9 Unmodified _QAEKVVTGP_ 0 0 0 ENST00000302538.9_1_17:908952-909069:-|nuORF ENST00000302538.9_1_17:908952-909069:-|nuORF ENST00000302538.9_1_17:908952-909069:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2589111328125 2 464.758549 927.502546 0.14946 6.9463E-05 -0.012838 -5.9664E-06 0.13662 6.3497E-05 464.75850428043566 32.589 0.45139 32.589 32.329 32.78 0 19 12 2 0 0 0 0.54076 1 5921 5921 17.113 0.1706 1 608860 35224 8574 23719 23734 34594 34594 0.035894810348509054 QAERYEDM 8 Unmodified _QAERYEDM_ 0 0 0 nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN nc|ENSG00000175793|P31947-2|SFN nc|ENSG00000175793|P31947-2|SFN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2750244140625 2 521.218931 1040.42331 0.55848 0.00029109 -0.58791 -0.00030643 -0.029437 -1.5343E-05 521.2186721235332 31.048 1.6469 28.974 28.291 29.938 -2.0743 109 46 3 0 0 0 8448 1 5359 5359 0.68139 0 1 5770200 35225 6435 23720 23735 34595 34595 -0.09528533981620058 QAETQELLD 9 Unmodified _QAETQELLD_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1;SBF1|p.A530Sfs*46|1|0.17|ENSG00000100241|chr22:50464583-50464584|-/G|frameshift_variant;SBF1|p.L946Wfs*16|1|0.26|ENSG00000100241|chr22:50461526-50461526|G/-|frameshift_variant;SBF1|p.S1077Qfs*11|2|0.34|ENSG00000100241|chr22:50460326-50460327|-/G|frameshift_variant;SBF1|p.S1077Afs*28|3|0.34|ENSG00000100241|chr22:50460327-50460327|G/-|frameshift_variant;ENST00000444527.2_1_8:56366358-56367090:-|nuORF nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6904296875 2 523.753661 1045.49277 0.29481 0.00015441 1.5964 0.00083614 1.8913 0.00099055 523.7542486335956 21.484 0.35427 20.01 19.841 20.195 -1.4742 16 9 2 0 0 0 0.52396 1 3661 3661 18.146 0.011366 1 648170 35226 1942 23721 23736 34596 34596 -0.02815751761181673 QAETQELLD 9 Unmodified _QAETQELLD_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1;SBF1|p.A530Sfs*46|1|0.17|ENSG00000100241|chr22:50464583-50464584|-/G|frameshift_variant;SBF1|p.L946Wfs*16|1|0.26|ENSG00000100241|chr22:50461526-50461526|G/-|frameshift_variant;SBF1|p.S1077Qfs*11|2|0.34|ENSG00000100241|chr22:50460326-50460327|-/G|frameshift_variant;SBF1|p.S1077Afs*28|3|0.34|ENSG00000100241|chr22:50460327-50460327|G/-|frameshift_variant;ENST00000444527.2_1_8:56366358-56367090:-|nuORF nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.753661 1045.49277 -0.63176 -0.00033089 2.134 0.0011177 1.5023 0.00078682 523.7546607830965 21.688 0.3079 19.967 19.779 20.087 -1.7211 0.012865 0.00014569 NaN 18.146 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 592600 35227 1942 23721 23736 -0.02815751761181673 QAEVLSYSGK 10 Unmodified _QAEVLSYSGK_ 0 0 0 REV__nc|ENSG00000162692|P19320-2|VCAM1 REV__nc|ENSG00000162692|P19320-2|VCAM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2787475585938 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 170.96 1 166.17 165.67 166.67 -4.7898 0 0 0 2.8426 1 34731 34731 0.84494 0 1 + 35228 17519 23722 23737 34597 34597 0.008088313724329055 QAEWRQYLEFV 11 Unmodified _QAEWRQYLEFV_ 0 0 0 REV__TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant REV__TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2584228515625 3 490.245498 1467.71466 NaN NaN NaN NaN NaN NaN NaN 46.382 1 43.517 43.017 44.017 -2.8653 0 0 0 0.22632 1 8431 8431 5.4027 2.3304 1 + 35229 14053 23723 23738 34598 34598 -0.0004847234501994535 QAFVRALYP 9 Unmodified _QAFVRALYP_ 0 0 0 ENST00000397261.7_1_3:9834629-9834722:+|nuORF ENST00000397261.7_1_3:9834629-9834722:+|nuORF ENST00000397261.7_1_3:9834629-9834722:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26220703125 2 532.798009 1063.58147 0.58711 0.00031281 -0.5329 -0.00028393 0.054214 2.8885E-05 532.7976663497615 164.5 0.20772 159.45 159.38 159.59 -5.0446 9 5 2 0 0 0 0.5059 1 32084 32084 19.257 1.122 1 4577700 35230 9462 23724 23739 34599 34599 0.052217530597772566 QAGLKGST 8 Unmodified _QAGLKGST_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21075439453125 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 75.951 1 75.951 75.451 76.451 0 0 0 0 0.23899 1 14758 14758 1.3295 0 1 35231 1532 23725 23740 34600 34600 0.018129672835243582 QAIANEDL 8 Unmodified _QAIANEDL_ 0 0 0 REV__nc|ENSG00000165533|Q8TAM2-6|TTC8 REV__nc|ENSG00000165533|Q8TAM2-6|TTC8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.218505859375 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 41.586 1 41.586 41.086 42.086 0 0 0 0 0.21486 1 7761 7761 7.9102 0 1 + 35232 17780 23726 23741 34601 34601 -0.017353712702515622 QAIKEERKERR 11 Unmodified _QAIKEERKERR_ 0 0 0 ENSG00000135521|ENST00000367576|LTV1 ENSG00000135521|ENST00000367576|LTV1 ENSG00000135521|ENST00000367576|LTV1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77703857421875 3 481.611063 1441.81136 NaN NaN NaN NaN NaN NaN NaN 21.505 1 20.121 19.621 20.621 -1.3847 0 0 0 0.23698 1 3387 3387 2.084 0.97421 1 35233 3932 23727 23742 34602 34602 0.10812514934787032 QAKLKLEEK 9 Unmodified _QAKLKLEEK_ 0 0 0 SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;SPAG9|p.R484Kfs*7|1|0.28|ENSG00000008294|chr17:51005237-51005238|-/T|frameshift_variant;nc|ENSG00000008294|O60271-9|SPAG9 SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77490234375 2 543.829506 1085.64446 NaN NaN NaN NaN NaN NaN NaN 9.4817 1 9.4817 8.9817 9.9817 0 0 0 0 0.23508 1 1100 1100 0.6015 0 1 35234 1041 23728 23743 34603 34603 0.10506274057161136 QAKRVLTL 8 Unmodified _QAKRVLTL_ 0 0 0 REV__ENST00000495706.1_1_6:44222042-44222123:-|nuORF REV__ENST00000495706.1_1_6:44222042-44222123:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650390625 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 10.215 1 9.1482 8.6482 9.6482 -1.0664 0 0 0 0.21486 1 1092 1092 0.40072 0 1 + 35235 22381 23729 23744 34604 34604 0.11986056922410171 QAKYGADEV 9 Unmodified _QAKYGADEV_ 0 0 0 REV__tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1 REV__tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26617431640625 2 490.737814 979.461075 -0.27442 -0.00013467 0.24235 0.00011893 -0.03207 -1.5738E-05 490.7381581295999 78.875 0.66099 75.199 74.887 75.548 -3.676 31 18 3 0 0 0 0.74655 1 14993 14993 6.7232 2.3939 1 1052800 + 35236 25291 23730 23745 34605 34605 -0.02947699724472841 QALAFPSEG 9 Unmodified _QALAFPSEG_ 0 0 0 ENST00000433871.5_1_3:10059556-10065317:-|nuORF ENST00000433871.5_1_3:10059556-10065317:-|nuORF ENST00000433871.5_1_3:10059556-10065317:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22772216796875 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 24.088 1 22.554 22.054 23.054 -1.5342 0 0 0 0.22621 1 3911 3911 15.847 2.3393 1 35237 9816 23731 23746 34606 34606 -0.01778780890560938 QALGEVLRA 9 Unmodified _QALGEVLRA_ 0 0 0 REV__nc|ENSG00000177238|Q6ZMU5-2|TRIM72 REV__nc|ENSG00000177238|Q6ZMU5-2|TRIM72 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73333740234375 2 478.779816 955.545079 0.00083033 3.9754E-07 0.21136 0.0001012 0.21219 0.00010159 478.77990109029327 95.091 0.49056 91.21 90.95 91.441 -3.881 19 13 2 0 0 0 0.47592 1 18234 18234 24.882 0 1 1474500 + 35238 18548 23732 23747 34607 34607 0.0655287616308442 QALGKNKLAK 10 Unmodified _QALGKNKLAK_ 0 0 0 nc|ENSG00000165185|Q8N8K9-2|KIAA1958 nc|ENSG00000165185|Q8N8K9-2|KIAA1958 nc|ENSG00000165185|Q8N8K9-2|KIAA1958 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5599060058594 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 42.311 1 39.705 39.205 40.205 -2.606 0 0 0 0.22588 1 7607 7607 8.4443 2.2385 1 35239 12430 23733 23748 34608 34608 0.12873400013927494 QALIIVVLLGL 11 Unmodified _QALIIVVLLGL_ 0 0 0 REV__MFRP|p.A86V|1|0.27|ENSG00000235718|chr11:119346060-119346060|G/A|missense_variant REV__MFRP|p.A86V|1|0.27|ENSG00000235718|chr11:119346060-119346060|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3323974609375 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 157.5 1 152.21 151.71 152.71 -5.2854 0 0 0 0.2367 1 30565 30565 2.9952 1.6657 1 + 35240 23849 23734 23749 34609 34609 0.19957771544500247 QALKWREY 8 Unmodified _QALKWREY_ 0 0 0 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7935180664062 2 547.293091 1092.57163 0.33269 0.00018208 -1.357 -0.00074268 -1.0243 -0.00056061 547.2921325432287 125.13 0.56673 120.53 120.19 120.76 -4.5984 40 15 3 0 0 0 0.36038 1 24634 24634 34.102 0 1 5599100 35241 7508 23735 23750 34610 34610 0.029045650544276214 QALRELVYFFR 11 Unmodified _QALRELVYFFR_ 0 0 0 sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1;sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1 sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2436828613281 3 481.269866 1440.78777 NaN NaN NaN NaN NaN NaN NaN 106.36 1 101.98 101.48 102.48 -4.3764 0 0 0 0.22632 1 20399 20399 0.50596 0.41111 1 35242 25758 23736 23751 34611 34611 0.08500701168259184 QALSLVKLV 9 Unmodified _QALSLVKLV_ 0 0 0 REV__nc|ENSG00000244731|P0C0L4-2|C4A REV__nc|ENSG00000244731|P0C0L4-2|C4A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.2159118652344 3 324.214699 969.622267 NaN NaN NaN NaN NaN NaN NaN 177.3 1 172.51 172.01 173.01 -4.7898 0 0 0 0.23508 1 36262 36262 0.26902 0 1 + 35243 19717 23737 23752 34612 34612 0.1362409437944052 QAMASPDPL 9 Unmodified _QAMASPDPL_ 0 0 0 ENST00000263674.3_1_11:73078903-73079227:+|nuORF ENST00000263674.3_1_11:73078903-73079227:+|nuORF ENST00000263674.3_1_11:73078903-73079227:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2412109375 2 465.223485 928.432418 NaN NaN NaN NaN NaN NaN NaN 88.354 1 88.354 87.854 88.854 0 0 0 0 0.19674 1 17245 17245 0.12781 0 1 35244 8327 23738 23753 34613 34613 -0.03466140625266689 QAMWCWDWTR 10 Unmodified _QAMWCWDWTR_ 0 0 0 REV__nc|ENSG00000253649|A0A1B0GVH4|PRSS51 REV__nc|ENSG00000253649|A0A1B0GVH4|PRSS51 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5295715332031 3 461.530475 1381.5696 NaN NaN NaN NaN NaN NaN NaN 150.25 1 145.05 144.55 145.55 -5.1994 0 0 0 2.8426 1 29113 29113 0.043787 0 1 + 35245 19837 23739 23754 34614 34614 -0.10592555017365157 QAMWCWDWTR 10 Unmodified _QAMWCWDWTR_ 0 0 0 REV__nc|ENSG00000253649|A0A1B0GVH4|PRSS51 REV__nc|ENSG00000253649|A0A1B0GVH4|PRSS51 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5303039550781 3 461.530475 1381.5696 NaN NaN NaN NaN NaN NaN NaN 156.27 1 151 150.5 151.5 -5.2712 0 0 0 2.8426 1 30305 30305 0.043787 0 1 + 35246 19837 23739 23754 34615 34615 -0.10592555017365157 QAPNEAKRTS 10 Unmodified _QAPNEAKRTS_ 0 0 0 REV__nc|ENSG00000007541|Q9BRB3-3|PIGQ REV__nc|ENSG00000007541|Q9BRB3-3|PIGQ MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.8867492675781 3 367.859755 1100.55744 0.38173 0.00014042 -1.1386 -0.00041884 -0.75686 -0.00027842 367.8595793975053 22.387 0.4771 20.912 20.626 21.104 -1.4742 27 13 3 0 0 0 1.1218 1 3851 3851 6.6304 0 1 718600 + 35247 13891 23740 23755 34616 34616 0.011178678354781368 QAPPPPQQV 9 Unmodified _QAPPPPQQV_ 0 0 0 nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2449035644531 2 481.258717 960.50288 0.0052849 2.5434E-06 0.45154 0.00021731 0.45682 0.00021985 481.2586856053868 32.841 0.62608 32.841 32.399 33.025 0 25 17 2 0 0 0 0.09885 3 5981 5920;5964;5981 56.177 23.872 1 590520 35248 7500 23741 23756 34617;34618;34619 34619 0.02104900754704886 QAPQYHIYSP 10 Unmodified _QAPQYHIYSP_ 0 0 0 REV__nc|ENSG00000124155|Q969N2-2|PIGT REV__nc|ENSG00000124155|Q969N2-2|PIGT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2993774414062 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 51.349 1 48.466 47.966 48.966 -2.8824 0 0 0 0.22588 1 9754 9754 10.074 1.9184 1 + 35249 15752 23742 23757 34620 34620 -0.021160600164193966 QAPRPLAGP 9 Unmodified _QAPRPLAGP_ 0 0 0 REV__nc|ENSG00000173083|Q9Y251-4|HPSE REV__nc|ENSG00000173083|Q9Y251-4|HPSE MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7608642578125 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 145.63 1 140.96 140.46 141.46 -4.6694 0 0 0 0.23411 1 28868 28868 13.508 0.97634 1 + 35250 18325 23743 23758 34621 34621 0.051766243371730525 QAPRPLAGP 9 Unmodified _QAPRPLAGP_ 0 0 0 REV__nc|ENSG00000173083|Q9Y251-4|HPSE REV__nc|ENSG00000173083|Q9Y251-4|HPSE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76055908203125 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 129.9 1 125.06 124.56 125.56 -4.8355 0 0 0 0.19679 1 24940 24940 0.37959 0 1 + 35251 18325 23743 23758 34622 34622 0.051766243371730525 QAPRPLAGP 9 Unmodified _QAPRPLAGP_ 0 0 0 REV__nc|ENSG00000173083|Q9Y251-4|HPSE REV__nc|ENSG00000173083|Q9Y251-4|HPSE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7603454589844 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 151.7 1 146.46 145.96 146.96 -5.2365 0 0 0 0.1966 1 29404 29404 1.2148 0 1 + 35252 18325 23743 23758 34623 34623 0.051766243371730525 QAPSWRWR 8 Unmodified _QAPSWRWR_ 0 0 0 ENST00000426431.2_1_12:53805763-53805964:+|nuORF ENST00000426431.2_1_12:53805763-53805964:+|nuORF ENST00000426431.2_1_12:53805763-53805964:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7816162109375 2 543.783225 1085.5519 NaN NaN NaN NaN NaN NaN NaN 9.4035 1 8.3688 7.8688 8.8688 -1.0347 0 0 0 0.2396 1 956 956 0.0082765 0 1 35253 9726 23744 23759 34624 34624 0.012542338343109805 QAQHSHHLWCF 11 Unmodified _QAQHSHHLWCF_ 0 0 0 ENST00000525598.1_1_11:118984241-118984860:+|nuORF ENST00000525598.1_1_11:118984241-118984860:+|nuORF ENST00000525598.1_1_11:118984241-118984860:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2425231933594 3 465.212134 1392.61457 NaN NaN NaN NaN NaN NaN NaN 79.359 1 79.359 78.859 79.859 0 0 0 0 0.22632 1 15442 15442 0.026206 0 1 35254 10898 23745 23760 34625 34625 -0.06602988159806955 QAQSKGNPEQ 10 Unmodified _QAQSKGNPEQ_ 0 0 0 ENSG00000109072|ENST00000226218|VTN ENSG00000109072|ENST00000226218|VTN ENSG00000109072|ENST00000226218|VTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.777099609375 2 543.762352 1085.51015 NaN NaN NaN NaN NaN NaN NaN 63.934 1 60.937 60.437 61.437 -2.9975 0 0 0 2.8426 1 12360 12360 0.84494 0 1 35255 2514 23746 23761 34626 34626 -0.029184114355075508 QAQTRAQA 8 Unmodified _QAQTRAQA_ 0 0 0 REV__nc|ENSG00000134909|A7KAX9|ARHGAP32 REV__nc|ENSG00000134909|A7KAX9|ARHGAP32 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2297058105469 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 53.532 1 53.532 53.032 54.032 0 0 0 0 0.069747 1 10196 10196 49.933 13.427 1 + 35256 16237 23747 23762 34627 34627 0.0051027291802938635 QAQTRAQA 8 Unmodified _QAQTRAQA_ 0 0 0 REV__nc|ENSG00000134909|A7KAX9|ARHGAP32 REV__nc|ENSG00000134909|A7KAX9|ARHGAP32 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23004150390625 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 56.818 1 53.642 53.142 54.142 -3.1761 0 0 0 0.22674 1 10581 10581 6.1918 2.6048 1 + 35257 16237 23747 23762 34628 34628 0.0051027291802938635 QARPEGCF 8 Unmodified _QARPEGCF_ 0 0 0 REV__ENST00000561090.5_1_14:24653890-24654746:-|nuORF REV__ENST00000561090.5_1_14:24653890-24654746:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75177001953125 2 454.20817 906.401786 NaN NaN NaN NaN NaN NaN NaN 88.806 1 88.806 88.306 89.306 0 0 0 0 0.23749 1 17336 17336 0.0082765 0 1 + 35258 23047 23748 23763 34629 34629 -0.055158742196454114 QARPEGCF 8 Unmodified _QARPEGCF_ 0 0 0 REV__ENST00000561090.5_1_14:24653890-24654746:-|nuORF REV__ENST00000561090.5_1_14:24653890-24654746:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7636413574219 2 454.20817 906.401786 NaN NaN NaN NaN NaN NaN NaN 90.399 1 86.54 86.04 87.04 -3.8595 0 0 0 0.23749 1 17684 17684 0.0082765 0 1 + 35259 23047 23748 23763 34630 34630 -0.055158742196454114 QARPEGCF 8 Unmodified _QARPEGCF_ 0 0 0 REV__ENST00000561090.5_1_14:24653890-24654746:-|nuORF REV__ENST00000561090.5_1_14:24653890-24654746:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75982666015625 2 454.20817 906.401786 NaN NaN NaN NaN NaN NaN NaN 58.265 1 55.014 54.514 55.514 -3.2517 0 0 0 0.23749 1 10825 10825 0.0082765 0 1 + 35260 23047 23748 23763 34631 34631 -0.055158742196454114 QARPEGCF 8 Unmodified _QARPEGCF_ 0 0 0 REV__ENST00000561090.5_1_14:24653890-24654746:-|nuORF REV__ENST00000561090.5_1_14:24653890-24654746:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.76080322265625 2 454.20817 906.401786 NaN NaN NaN NaN NaN NaN NaN 90.599 1 86.821 86.321 87.321 -3.7779 0 0 0 0.23749 1 17339 17339 0.0082765 0 1 + 35261 23047 23748 23763 34632 34632 -0.055158742196454114 QATEEFIDE 9 Unmodified _QATEEFIDE_ 0 0 0 REV__ENSG00000112379|ENST00000251691|ARFGEF3 REV__ENSG00000112379|ENST00000251691|ARFGEF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2835083007812 2 541.237844 1080.46113 0.29778 0.00016117 3.3615 0.0018194 3.6593 0.0019805 541.7415613801277 117.95 0.31774 117.95 117.79 118.11 0 10 8 2 0 0 0 0.84208 1 23251 23251 1.6526 0.17072 1 953290 + 35262 15298 23749 23764 34633 34633 -0.0758774451512636 QATSSPNG 8 Unmodified _QATSSPNG_ 0 0 0 REV__nc|ENSG00000009413|O60673-2|REV3L REV__nc|ENSG00000009413|O60673-2|REV3L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21221923828125 2 381.17485 760.335146 NaN NaN NaN NaN NaN NaN NaN 33.806 1 31.488 30.988 31.988 -2.3175 0 0 0 0.23749 1 6192 6192 0.0082765 0 1 + 35263 13909 23750 23765 34634 34634 -0.05460786509888749 QAVKVNEPA 9 Unmodified _QAVKVNEPA_ 0 0 0 REV__ENSG00000163884|ENST00000296233|KLF15 REV__ENSG00000163884|ENST00000296233|KLF15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7312927246094 2 478.263999 954.513445 0.20881 9.9865E-05 -0.34427 -0.00016465 -0.13546 -6.4786E-05 478.26386668910607 64.957 0.31314 61.499 61.333 61.646 -3.4581 9 8 2 0 0 0 0.45972 1 12137 12137 8.1555 3.2585 1 879640 + 35264 17625 23751 23766 34635 34635 0.03436883409131042 QAVLPSWDK 9 Unmodified _QAVLPSWDK_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2;ENST00000529624.5_3_15:28877823-28916776:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000424611.5_1_15:20644728-20658919:-|nuORF;ENST00000437318.5_1_15:20588586-20648641:-|nuORF;HERC2|p.G2202Afs*8|1|0.2|ENSG00000128731|chr15:28213923-28213923|C/-|frameshift_variant;ENST00000530420.5_1_15:28896588-28900598:+|nuORF ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2650756835938 2 522.279649 1042.54475 -0.46755 -0.00024419 0.95888 0.0005008 0.49133 0.00025661 522.2802123177073 126.96 0.70601 122.17 121.74 122.45 -4.7958 34 19 2 0 0 0 0.25976 1 24299 24299 17.113 16.238 1 2314800 35265 3540 23752 23767 34636 34636 0.025174564432063562 QAWYSLSAR 9 Unmodified _QAWYSLSAR_ 0 0 0 REV__ENST00000491277.1_1_1:214706247-214706487:-|nuORF REV__ENST00000491277.1_1_1:214706247-214706487:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2784423828125 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 145.24 1 140.17 139.67 140.67 -5.0671 0 0 0 0.19652 1 28057 28057 0.073264 0 1 + 35266 22315 23753 23768 34637 34637 -0.001803118423140404 QCCCVHGC 8 Unmodified _QCCCVHGC_ 0 0 0 REV__nc|ENSG00000148356|Q6UWE0-3|LRSAM1 REV__nc|ENSG00000148356|Q6UWE0-3|LRSAM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 426.63531494140625 2 426.634611 851.25467 NaN NaN NaN NaN NaN NaN NaN 140.37 1 135.5 135 136 -4.8678 0 0 0 0.2396 1 27066 27066 0 0 1 + 35267 16970 23754 23769 34638 34638 -0.17690753692113503 QCCLSPCLTY 10 Unmodified _QCCLSPCLTY_ 0 0 0 ENST00000429422.5_2_3:47893728-47893833:-|nuORF ENST00000429422.5_2_3:47893728-47893833:-|nuORF ENST00000429422.5_2_3:47893728-47893833:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 566.2828979492188 2 565.737588 1129.46062 0.37996 0.00021496 0.87034 0.00049238 1.2503 0.00070734 565.7382522155584 150.73 0.20685 145.61 145.49 145.7 -5.1204 7 5 2 0 0 0 0.52989 1 29191 29191 1.9064 1.8626 1 1281200 35268 9761 23755 23770 34639 34639 -0.09892902031856465 QCCLSPCLTY 10 Unmodified _QCCLSPCLTY_ 0 0 0 ENST00000429422.5_2_3:47893728-47893833:-|nuORF ENST00000429422.5_2_3:47893728-47893833:-|nuORF ENST00000429422.5_2_3:47893728-47893833:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 565.737588 1129.46062 -0.0020385 -1.1533E-06 -0.57374 -0.00032458 -0.57578 -0.00032574 565.7361544225623 150.52 0.17581 145.79 145.68 145.85 -4.7323 0.090972 -0.0012608 NaN 1.9064 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1327800 35269 9761 23755 23770 -0.09892902031856465 QCDCTRTGY 9 Unmodified _QCDCTRTGY_ 0 0 0 nc|ENSG00000095303|P23219-3|PTGS1;nc|ENSG00000095303|P23219-2|PTGS1;ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1;PTGS1|p.G65D|1|0.12|ENSG00000095303|chr9:122377998-122377998|G/A|missense_variant;PTGS1|p.T128Pfs*17|1|0.26|ENSG00000095303|chr9:122378798-122378798|C/-|frameshift_variant nc|ENSG00000095303|P23219-3|PTGS1 nc|ENSG00000095303|P23219-3|PTGS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6950073242188 2 523.705134 1045.39571 0.17097 8.954E-05 2.1638 0.0011332 2.3348 0.0012227 523.7059157668947 85.776 0.53693 85.776 85.47 86.007 0 22 14 3 0 0 0 0.48181 1 16724 16724 1.2148 0.80657 1 1198400 35270 1855 23756 23771 34640 34640 -0.12516760513472036 QCEETWSGYR 10 Unmodified _QCEETWSGYR_ 0 0 0 REV__nc|ENSG00000091181|Q01344-3|IL5RA REV__nc|ENSG00000091181|Q01344-3|IL5RA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7656860351562 2 629.761494 1257.50844 1.7709 0.0011153 0.9872 0.0006217 2.7581 0.001737 629.7624305721722 28.129 1.2823 26.173 25.803 27.085 -1.9561 128 36 6 0 0 0 0.71778 1 4981 4981 9.3831 9.3831 1 61692000 + 35271 14568 23757 23772 34641 34641 -0.11001788515795852 QCLGGPWL 8 Unmodified _QCLGGPWL_ 0 0 0 REV__ENST00000307741.10_1_19:2813607-2814732:+|nuORF REV__ENST00000307741.10_1_19:2813607-2814732:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2171936035156 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 67.254 1 64.145 63.645 64.645 -3.1086 0 0 0 0.21486 1 13043 13043 11.114 1.767 1 + 35272 20453 23758 23773 34642 34642 -0.019854982088986617 QCLQGVLAP 9 Unmodified _QCLQGVLAP_ 0 0 0 REV__ENST00000438489.6_1_19:16849058-16926137:+|nuORF REV__ENST00000438489.6_1_19:16849058-16926137:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1701965332031 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 152.57 1 152.57 152.07 153.07 0 0 0 0 0.23508 1 30560 30560 1.1933 0.23107 1 + 35273 21685 23759 23774 34643 34643 0.01814442508339198 QCQAVRMPGC 10 Unmodified _QCQAVRMPGC_ 0 0 0 nc|ENSG00000197181|Q8TC59-2|PIWIL2;ENSG00000197181|ENST00000356766|PIWIL2 nc|ENSG00000197181|Q8TC59-2|PIWIL2 nc|ENSG00000197181|Q8TC59-2|PIWIL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.778564453125 2 546.740996 1091.46744 0.83244 0.00045513 0.080216 4.3857E-05 0.91266 0.00049899 546.7405610432817 105.02 1.0912 100.97 100.34 101.43 -4.0543 90 30 4 0 0 0 0.47611 1 20095 20095 6.6304 0.42459 1 8166400 35274 7340 23760 23775 34644 34644 -0.07463544360598462 QCQEGCEQR 9 Unmodified _QCQEGCEQR_ 0 0 0 ENST00000367255.9_1_6:152748906-152749522:-|nuORF ENST00000367255.9_1_6:152748906-152749522:-|nuORF ENST00000367255.9_1_6:152748906-152749522:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2747192382812 2 540.71349 1079.41243 0.3605 0.00019493 1.4186 0.00076706 1.7791 0.00096199 540.7142492952231 84.646 0.70308 84.646 84.346 85.049 0 31 19 2 0 0 0 0.6215 1 16514 16514 0.40827 0 1 4971700 35275 9063 23761 23776 34645 34645 -0.12410259627540654 QCTYNSSL 8 Unmodified _QCTYNSSL_ 0 0 0 sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1;sp|P12824|GH_HCMVAEnvelopeglycoproteinHOS=Humancytomegalovirus(strainAD169)OX=10360GN=gHPE=1SV=1 sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1 sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 306.15472412109375 3 305.800737 914.380382 -0.75468 -0.00023078 1.2037 0.00036808 0.44899 0.0001373 305.80112983583456 108.94 0.66412 104.56 104.22 104.89 -4.3776 31 18 2 0 0 0 0.83982 1 21416 21416 1.6526 0 1 1243000 35276 25748 23762 23777 34646 34646 -0.08023304039022605 QCTYNSSL 8 Unmodified _QCTYNSSL_ 0 0 0 sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1;sp|P12824|GH_HCMVAEnvelopeglycoproteinHOS=Humancytomegalovirus(strainAD169)OX=10360GN=gHPE=1SV=1 sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1 sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 305.800737 914.380382 -0.17622 -5.3889E-05 0.54089 0.00016541 0.36467 0.00011152 305.8009627350085 104.55 0.82391 104.55 104.14 104.97 0 -0.045947 -0.00017825 NaN 1.6526 34 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1572200 35277 25748 23762 23777 -0.08023304039022605 QCTYNSSL 8 Unmodified _QCTYNSSL_ 0 0 0 sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1;sp|P12824|GH_HCMVAEnvelopeglycoproteinHOS=Humancytomegalovirus(strainAD169)OX=10360GN=gHPE=1SV=1 sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1 sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 305.800737 914.380382 -0.15066 -4.6073E-05 0.72433 0.0002215 0.57367 0.00017543 305.80095965310045 109.05 0.76211 104.6 104.19 104.95 -4.4518 0.011669 -9.9654E-06 NaN 1.6526 42 21 3 NaN NaN NaN NaN 0 NaN NaN 0 2243200 35278 25748 23762 23777 -0.08023304039022605 QCTYNSSL 8 Unmodified _QCTYNSSL_ 0 0 0 sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1;sp|P12824|GH_HCMVAEnvelopeglycoproteinHOS=Humancytomegalovirus(strainAD169)OX=10360GN=gHPE=1SV=1 sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1 sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 305.800737 914.380382 -0.017786 -5.439E-06 0.42675 0.0001305 0.40897 0.00012506 305.8009035793317 108.84 0.83841 104.66 104.25 105.09 -4.1826 0.066354 -0.00028296 NaN 1.6526 34 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1401100 35279 25748 23762 23777 -0.08023304039022605 QCWCVDKY 8 Unmodified _QCWCVDKY_ 0 0 0 ENSG00000152377|ENST00000394945|SPOCK1 ENSG00000152377|ENST00000394945|SPOCK1 ENSG00000152377|ENST00000394945|SPOCK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.695068359375 2 522.717513 1043.42047 0.85927 0.00044915 0.76883 0.00040188 1.6281 0.00085104 522.7182828190503 26.578 0.40602 24.796 24.62 25.026 -1.7821 25 11 3 0 0 0 0.74398 1 4690 4690 7.9102 0 1 817900 35280 4918 23763 23778 34647 34647 -0.09950080640101078 QDADQQLEF 9 Unmodified _QDADQQLEF_ 0 0 0 ENSG00000123607|ENST00000243344|TTC21B;nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF ENSG00000123607|ENST00000243344|TTC21B ENSG00000123607|ENST00000243344|TTC21B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7904052734375 2 547.24346 1092.47237 -0.22825 -0.00012491 0.1751 9.582E-05 -0.053156 -2.9089E-05 547.2434222792277 107.15 0.90356 102.83 102.47 103.38 -4.32 47 25 3 0 0 0 0.80521 1 21051 21051 10.824 0 1 3848300 35281 3276 23764 23779 34648 34648 -0.07016922420984884 QDAKLHGF 8 Unmodified _QDAKLHGF_ 0 0 0 tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2383117675781 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 57.573 1 57.573 57.073 58.073 0 0 0 0 0.20618 1 11009 11009 20.454 4.6064 1 35282 26230 23765 23780 34649 34649 0.00036345066178000707 QDAKLHGF 8 Unmodified _QDAKLHGF_ 0 0 0 tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22698974609375 2 458.237784 914.461016 -0.12358 -5.6631E-05 0.88877 0.00040727 0.76518 0.00035064 458.2381682955414 59.788 0.94103 56.855 56.469 57.41 -2.9333 35 26 2 0 0 0 0.68128 1 11605 11605 16.942 3.4344 1 1770400 35283 26230 23765 23780 34650 34650 0.00036345066178000707 QDALVDRL 8 Unmodified _QDALVDRL_ 0 0 0 ENST00000264010.8_1_16:67596501-67605146:+|nuORF ENST00000264010.8_1_16:67596501-67605146:+|nuORF ENST00000264010.8_1_16:67596501-67605146:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25390625 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 102.46 1 98.271 97.771 98.771 -4.1861 0 0 0 0.20462 1 20137 20137 21.747 0 1 35284 8330 23766 23781 34651 34651 0.030685968920693085 QDAPGAESAG 10 Unmodified _QDAPGAESAG_ 0 0 0 ENSG00000160188|ENST00000291536|RSPH1;nc|ENSG00000160188|Q8WYR4-2|RSPH1 ENSG00000160188|ENST00000291536|RSPH1 ENSG00000160188|ENST00000291536|RSPH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 452.21978759765625 2 451.696146 901.377739 -0.058138 -2.6261E-05 -1.6202 -0.00073186 -1.6784 -0.00075812 451.69527164900177 63.676 0.56206 60.679 60.42 60.982 -2.9975 18 15 2 0 0 0 1.1094 1 12340 12340 0.20733 0 1 1740000 35285 5232 23767 23782 34652 34652 -0.07689436172324804 QDASSYFL 8 Unmodified _QDASSYFL_ 0 0 0 ENST00000485024.1_1_3:184529997-184533630:+|nuORF ENST00000485024.1_1_3:184529997-184533630:+|nuORF ENST00000485024.1_1_3:184529997-184533630:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25372314453125 2 465.713808 929.413062 0.2765 0.00012877 0.066222 3.0841E-05 0.34272 0.00015961 465.7137966905915 102.22 0.81971 97.895 97.54 98.36 -4.3208 52 23 3 0 0 0 0.74718 1 19659 19659 18.135 0 1 6139800 35286 10439 23768 23783 34653 34653 -0.054467736445189985 QDAYIVKNK 9 Unmodified _QDAYIVKNK_ 0 0 0 nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B nc|ENSG00000107731|Q8IZJ1-2|UNC5B nc|ENSG00000107731|Q8IZJ1-2|UNC5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201171875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 159.36 1 154.56 154.06 155.06 -4.7952 0 0 0 0.23508 1 31682 31682 2.086 0 1 35287 2436 23769 23784 34654 34654 0.046171279889904326 QDCDNTIGS 9 Unmodified _QDCDNTIGS_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A5160T|1|0.34|ENSG00000143341|chr1:186166846-186166846|G/A|missense_variant nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72528076171875 2 476.687464 951.360375 0.33324 0.00015885 2.189 0.0010435 2.5222 0.0012023 476.69106218672 146.96 0.91104 141.96 141.67 142.59 -5 103 25 6 0 0 0 0.34411 1 28486 28486 29.082 7.3349 1 13043000 35288 4474 23770 23785 34655 34655 -0.11725099769626013 QDCDNTIGS 9 Unmodified _QDCDNTIGS_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A5160T|1|0.34|ENSG00000143341|chr1:186166846-186166846|G/A|missense_variant nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 476.687464 951.360375 -0.10245 -4.8837E-05 4.7846 0.0022808 4.6821 0.0022319 476.6913465094315 141.87 0.97664 141.87 141.57 142.55 0 -0.087047 0.00084994 NaN 29.082 77 27 4 NaN NaN NaN NaN 0 NaN NaN 0 9013900 35289 4474 23770 23785 -0.11725099769626013 QDCDNTIGS 9 Unmodified _QDCDNTIGS_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A5160T|1|0.34|ENSG00000143341|chr1:186166846-186166846|G/A|missense_variant nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 476.687464 951.360375 0.076762 3.6592E-05 4.3527 0.0020749 4.4294 0.0021115 476.6911454280954 146.73 0.79521 142.04 141.68 142.47 -4.6868 0.083694 0.00043816 NaN 29.082 63 22 4 NaN NaN NaN NaN 0 NaN NaN 0 9059700 35290 4474 23770 23785 -0.11725099769626013 QDCDWTTVR 9 Unmodified _QDCDWTTVR_ 0 0 0 REV__IQCJ-SCHIP1|p.G16D|1|0.14|ENSG00000283154|chr3:159273867-159273867|G/A|missense_variant REV__IQCJ-SCHIP1|p.G16D|1|0.14|ENSG00000283154|chr3:159273867-159273867|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.22235107421875 3 375.166079 1122.47641 0.2751 0.00010321 -3.4018 -0.0012762 -3.1267 -0.001173 375.1655474540337 86.542 0.42267 82.591 82.401 82.824 -3.9503 28 11 4 0 0 0 0.73814 1 16452 16452 4.5289 0.33936 1 1388100 + 35291 19955 23771 23786 34656 34656 -0.07993156198949691 QDCDWTTVR 9 Unmodified _QDCDWTTVR_ 0 0 0 REV__IQCJ-SCHIP1|p.G16D|1|0.14|ENSG00000283154|chr3:159273867-159273867|G/A|missense_variant REV__IQCJ-SCHIP1|p.G16D|1|0.14|ENSG00000283154|chr3:159273867-159273867|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.166079 1122.47641 0.2751 0.00010321 -3.4018 -0.0012762 -3.1267 -0.001173 375.1655474540337 86.542 0.42267 82.591 82.401 82.824 -3.9503 -0.015776 -0.0009782 NaN 4.5289 28 11 4 NaN NaN NaN NaN 0 NaN NaN 0 1388100 + 35292 19955 23771 23786 -0.07993156198949691 QDCDWTTVR 9 Unmodified _QDCDWTTVR_ 0 0 0 REV__IQCJ-SCHIP1|p.G16D|1|0.14|ENSG00000283154|chr3:159273867-159273867|G/A|missense_variant REV__IQCJ-SCHIP1|p.G16D|1|0.14|ENSG00000283154|chr3:159273867-159273867|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 375.166079 1122.47641 -0.60316 -0.00022629 -1.7542 -0.00065812 -2.3574 -0.0008844 375.49952587354113 86.352 0.35142 82.623 82.448 82.8 -3.7289 0.015776 0.00087613 NaN 4.5289 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 543950 + 35293 19955 23771 23786 -0.07993156198949691 QDDAMVDY 8 Unmodified _QDDAMVDY_ 0 0 0 nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1;PUM1|p.Q133Kfs*68|1|0.35|ENSG00000134644|chr1:31028832-31028832|A/-|frameshift_variant nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7224426269531 2 478.686933 955.359312 -0.001413 -6.7639E-07 3.647 0.0017458 3.6456 0.0017451 478.687232329361 47.37 0.1024 44.428 44.342 44.445 -2.9421 4 2 2 0 0 0 0.96284 1 8632 8632 8.5933 3.3626 1 276950 35294 3867 23772 23787 34657 34657 -0.12015314138545818 QDDDFYAYD 9 Unmodified _QDDDFYAYD_ 0 0 0 nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3 nc|ENSG00000138741|Q13507-3|TRPC3 nc|ENSG00000138741|Q13507-3|TRPC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3339233398438 2 576.211826 1150.4091 0.27309 0.00015736 0.44388 0.00025577 0.71696 0.00041312 576.2121557255402 85.911 0.70627 85.911 85.575 86.281 0 46 19 3 0 0 0 0.54076 1 16735 16735 17.113 0.1706 1 7279300 35295 4206 23773 23788 34658 34658 -0.16008907928903682 QDDKWRYL 8 Unmodified _QDDKWRYL_ 0 0 0 ARHGAP21|p.D1215Y|1|0.34|ENSG00000107863|chr10:24595786-24595786|C/A|missense_variant ARHGAP21|p.D1215Y|1|0.34|ENSG00000107863|chr10:24595786-24595786|C/A|missense_variant ARHGAP21|p.D1215Y|1|0.34|ENSG00000107863|chr10:24595786-24595786|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2095642089844 3 375.189212 1122.54581 -0.12273 -4.6048E-05 -0.004085 -1.5326E-06 -0.12682 -4.7581E-05 375.18914528456133 29.367 3.3014 29.367 27.044 30.346 0 189 94 4 0 0 0 8448 1 4800 4800 1.3295 1.3262 1 5724400 35296 203 23774 23789 34659 34659 -0.010563291878725067 QDDPLLSLG 9 Unmodified _QDDPLLSLG_ 0 0 0 REV__CENPJ|p.Q357Tfs*28|1|0.25|ENSG00000151849|chr13:24907099-24907100|-/T|frameshift_variant REV__CENPJ|p.Q357Tfs*28|1|0.25|ENSG00000151849|chr13:24907099-24907100|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.724853515625 2 479.248015 956.481476 0.12399 5.9423E-05 0.82256 0.00039421 0.94655 0.00045363 479.24863546556793 40.521 0.84884 40.521 40.245 41.094 0 51 23 4 0 0 0 0.47479 1 7644 7644 30.637 1.555 1 5104900 + 35297 13371 23775 23790 34660 34660 0.001494709353437429 QDDSEFYY 8 Unmodified _QDDSEFYY_ 0 0 0 REV__nc|ENSG00000145242|P54756-3|EPHA5 REV__nc|ENSG00000145242|P54756-3|EPHA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2703857421875 2 533.703637 1065.39272 0.65536 0.00034977 2.4001 0.001281 3.0555 0.0016307 534.2065524250161 111.82 0.21345 107.59 107.46 107.67 -4.2289 7 5 2 0 0 0 0.98792 1 21510 21510 9.3474 4.1168 1 661280 + 35298 16830 23776 23791 34661 34661 -0.13735989094993784 QDECVSRSY 9 Unmodified _QDECVSRSY_ 0 0 0 UBE4B|p.R1081C|1|0.22|ENSG00000130939|chr1:10168178-10168178|C/T|missense_variant UBE4B|p.R1081C|1|0.22|ENSG00000130939|chr1:10168178-10168178|C/T|missense_variant UBE4B|p.R1081C|1|0.22|ENSG00000130939|chr1:10168178-10168178|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7876586914062 2 543.729663 1085.44477 NaN NaN NaN NaN NaN NaN NaN 109.24 1 104.79 104.29 105.29 -4.4518 0 0 0 0.23508 1 20967 20967 7.2892 0.56607 1 35299 26546 23777 23792 34662 34662 -0.09453148952889023 QDEDESYY 8 Unmodified _QDEDESYY_ 0 0 0 REV__ENSG00000242732|ENST00000609883|RTL5 REV__ENSG00000242732|ENST00000609883|RTL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6953125 2 524.690726 1047.3669 0.49541 0.00025994 1.3411 0.00070368 1.8365 0.00096361 524.6928137115599 45.975 1.425 45.975 45.27 46.695 0 70 33 3 0 0 0 0.752 5 8588 8588;8686;8688;8728;8737 9.3474 0 1 1382500 + 35300 19795 23778 23793 34663;34664;34665;34666;34667 34663 -0.15488883337275183 QDEDESYY 8 Unmodified _QDEDESYY_ 0 0 0 REV__ENSG00000242732|ENST00000609883|RTL5 REV__ENSG00000242732|ENST00000609883|RTL5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 524.690726 1047.3669 -0.25034 -0.00013135 2.1891 0.0011486 1.9388 0.0010173 525.1924643828296 48.989 0.87224 46.108 45.717 46.59 -2.8811 0.066482 0.00064545 NaN 0.12286 39 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1008000 + 35301 19795 23778 23793 -0.15488883337275183 QDEESIDIF 9 Unmodified _QDEESIDIF_ 0 0 0 REV__nc|ENSG00000149100|Q7L2H7-2|EIF3M REV__nc|ENSG00000149100|Q7L2H7-2|EIF3M MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7700805664062 2 548.245669 1094.47678 0.73303 0.00040188 0.18536 0.00010162 0.91839 0.00050351 548.2458198249369 102.42 0.21056 102.42 102.3 102.52 0 6 5 2 0 0 0 0.79204 1 20110 20110 16.942 15.29 1 735760 + 35302 24092 23779 23794 34668 34668 -0.0666745799810542 QDEKEPSSY 9 Unmodified _QDEKEPSSY_ 0 0 0 ENST00000484201.5_1_1:114440516-114447658:-|nuORF ENST00000484201.5_1_1:114440516-114447658:-|nuORF ENST00000484201.5_1_1:114440516-114447658:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2728881835938 2 541.735468 1081.45638 0.22522 0.00012201 -0.23144 -0.00012538 -0.0062258 -3.3727E-06 541.7352390855887 81.627 0.86299 78.07 77.618 78.481 -3.557 42 24 2 0 0 0 0.73268 1 15905 15905 24.021 19.124 1 3399200 35303 10428 23780 23795 34669 34669 -0.08108628657873851 QDELLTAQY 9 Unmodified _QDELLTAQY_ 0 0 0 REV__nc|ENSG00000127603|O94854|MACF1 REV__nc|ENSG00000127603|O94854|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.274658203125 2 540.764029 1079.5135 0.54685 0.00029572 -0.65065 -0.00035185 -0.1038 -5.6132E-05 540.763552589243 82.173 0.85268 82.173 81.716 82.568 0 42 19 3 0 0 0 0.54354 1 16062 16062 16.942 0 1 4583900 + 35304 24029 23781 23796 34670 34670 -0.023071613815318415 QDENMDIDF 9 Unmodified _QDENMDIDF_ 0 0 0 tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1 tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1 tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 563.7230224609375 2 563.721504 1125.42845 NaN NaN NaN NaN NaN NaN NaN 169.77 1 164.98 164.48 165.48 -4.7898 0 0 0 0.19684 1 34406 34406 0.073264 0 1 35305 25894 23782 23797 34671 34671 -0.12924274909642008 QDESSEEEE 9 Unmodified _QDESSEEEE_ 0 0 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2654418945312 2 541.19383 1080.37311 0.41467 0.00022442 -0.72631 -0.00039307 -0.31164 -0.00016866 541.1933553830793 90.697 0.52178 86.653 86.306 86.828 -4.0443 27 14 2 0 0 0 0.85111 1 17242 17242 3.5965 0 1 2955700 35306 5840 23783 23798 34672 34672 -0.16386409896404075 QDESSGGNR 9 Unmodified _QDESSGGNR_ 0 0 0 ENST00000394287.7_1_17:37604138-37607346:-|nuORF ENST00000394287.7_1_17:37604138-37607346:-|nuORF ENST00000394287.7_1_17:37604138-37607346:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1370544433594 3 317.137177 948.389701 NaN NaN NaN NaN NaN NaN NaN 105.78 1 101.4 100.9 101.9 -4.3764 0 0 0 0.23508 1 20279 20279 1.0715 0 1 35307 9411 23784 23799 34673 34673 -0.08655819429122857 QDEVLGTSM 9 Unmodified _QDEVLGTSM_ 0 0 0 REV__ENSG00000100373|ENST00000216211|UPK3A REV__ENSG00000100373|ENST00000216211|UPK3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2623291015625 2 490.223682 978.432811 NaN NaN NaN NaN NaN NaN NaN 82.02 1 78.463 77.963 78.963 -3.557 0 0 0 0.18489 1 16029 16029 6.4869 5.6117 1 + 35308 14703 23785 23800 34674 34674 -0.05726765696056191 QDFLGGRG 8 Unmodified _QDFLGGRG_ 0 0 0 COL4A4|p.P502Lfs*151|1|0.38|ENSG00000081052|chr2:227088771-227088771|G/-|frameshift_variant COL4A4|p.P502Lfs*151|1|0.38|ENSG00000081052|chr2:227088771-227088771|G/-|frameshift_variant COL4A4|p.P502Lfs*151|1|0.38|ENSG00000081052|chr2:227088771-227088771|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24029541015625 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 131.42 1 126.57 126.07 127.07 -4.8434 0 0 0 0.2343 1 25238 25238 0.0082765 0 1 35309 628 23786 23801 34675 34675 -0.016205144849323005 QDFLLLKQKA 10 Unmodified _QDFLLLKQKA_ 0 0 0 nc|ENSG00000073737|Q9BPW9-2|DHRS9;nc|ENSG00000073737|Q9BPW9-3|DHRS9;ENSG00000073737|ENST00000674881|DHRS9;nc|ENSG00000073737|Q9BPW9-4|DHRS9 nc|ENSG00000073737|Q9BPW9-2|DHRS9 nc|ENSG00000073737|Q9BPW9-2|DHRS9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2928466796875 2 602.358431 1202.70231 NaN NaN NaN NaN NaN NaN NaN 131.08 1 126.25 125.75 126.75 -4.8355 0 0 0 0.22588 1 25169 25169 5.7319 0 1 35310 1487 23787 23802 34676 34676 0.10906535982644527 QDFLRIIHHYT 11 Unmodified _QDFLRIIHHYT_ 0 0 0 REV__ENSG00000132300|ENST00000254630|PTCD3 REV__ENSG00000132300|ENST00000254630|PTCD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76568603515625 3 481.589487 1441.74663 NaN NaN NaN NaN NaN NaN NaN 61.532 1 58.162 57.662 58.662 -3.3694 0 0 0 0.23652 1 11470 11470 3.134 0.29067 1 + 35311 16103 23788 23803 34677 34677 0.04342940128799455 QDFYNWHD 8 Unmodified _QDFYNWHD_ 0 0 0 MOB4|p.P26H|1|0.39|ENSG00000115540|chr2:197523640-197523640|C/A|missense_variant MOB4|p.P26H|1|0.39|ENSG00000115540|chr2:197523640-197523640|C/A|missense_variant MOB4|p.P26H|1|0.39|ENSG00000115540|chr2:197523640-197523640|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21466064453125 3 375.485917 1123.43592 -0.39268 -0.00014744 -2.9212 -0.0010969 -3.3139 -0.0012443 375.81892256247215 17.814 0.17603 16.503 16.404 16.58 -1.3109 8 4 3 0 0 0 1.027 1 2870 2870 1.3295 0 1 213310 35312 12156 23789 23804 34678 34678 -0.12085754527060999 QDGACLVPL 9 Unmodified _QDGACLVPL_ 0 0 0 ENST00000309502.7_1_1:203097442-203098130:+|nuORF ENST00000309502.7_1_1:203097442-203098130:+|nuORF ENST00000309502.7_1_1:203097442-203098130:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23333740234375 2 458.233853 914.453153 NaN NaN NaN NaN NaN NaN NaN 146.87 1 146.87 146.37 147.37 0 0 0 0 0.23508 1 29376 29376 7.9102 0 1 35313 8632 23790 23805 34679 34679 -0.0074955024559812955 QDGAGDDDD 9 Unmodified _QDGAGDDDD_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 303.074951171875 3 303.101909 906.283899 NaN NaN NaN NaN NaN NaN NaN 179.41 1 174.63 174.13 175.13 -4.7898 0 0 0 0.23508 1 36706 36706 0 0 1 35314 7003 23791 23806 34680 34680 -0.17299200065269815 QDGGGSQA 8 Unmodified _QDGGGSQA_ 0 0 0 ENSG00000134256|ENST00000682167|CD101;CD101|p.P656Rfs*10|1|0.34|ENSG00000134256|chr1:117018505-117018505|C/-|frameshift_variant ENSG00000134256|ENST00000682167|CD101 ENSG00000134256|ENST00000682167|CD101 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.207763671875 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 59.385 1 56.071 55.571 56.571 -3.3139 0 0 0 0.2396 1 11041 11041 0 0 1 35315 3838 23792 23807 34681 34681 -0.08221646061053889 QDGGRFLG 8 Unmodified _QDGGRFLG_ 0 0 0 ENST00000306480.10_2_4:166024219-166034007:-|nuORF ENST00000306480.10_2_4:166024219-166034007:-|nuORF ENST00000306480.10_2_4:166024219-166034007:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2449645996094 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 76.387 1 72.753 72.253 73.253 -3.6337 0 0 0 0.23107 1 14542 14542 0.063987 0 1 35316 8609 23793 23808 34682 34682 -0.016205144849436692 QDGGRFLG 8 Unmodified _QDGGRFLG_ 0 0 0 ENST00000306480.10_2_4:166024219-166034007:-|nuORF ENST00000306480.10_2_4:166024219-166034007:-|nuORF ENST00000306480.10_2_4:166024219-166034007:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2381591796875 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 125.39 1 120.74 120.24 121.24 -4.6495 0 0 0 0.21486 1 24125 24125 7.9102 0 1 35317 8609 23793 23808 34683 34683 -0.016205144849436692 QDGMQLIDQ 9 Unmodified _QDGMQLIDQ_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.688720703125 2 524.242406 1046.47026 0.39759 0.00020844 0.20233 0.00010607 0.59992 0.0003145 524.2425478337503 74.508 0.80118 70.914 70.537 71.338 -3.594 47 22 3 0 0 0 0.54058 1 14081 14081 4.897 4.4887 1 2782700 + 35318 18377 23794 23809 34684 34684 -0.05111674430440871 QDGMQLIDQ 9 Unmodified _QDGMQLIDQ_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 524.242406 1046.47026 -0.24215 -0.00012695 0.81316 0.00042629 0.57101 0.00029935 524.2429094128744 74.373 0.62982 71.008 70.605 71.235 -3.3643 0.059168 0.00018612 NaN 4.897 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2563900 + 35319 18377 23794 23809 -0.05111674430440871 QDGRVAGF 8 Unmodified _QDGRVAGF_ 0 0 0 B3GAT3|p.V237A|1|0.41|ENSG00000149541|chr11:62616705-62616705|A/G|missense_variant B3GAT3|p.V237A|1|0.41|ENSG00000149541|chr11:62616705-62616705|A/G|missense_variant B3GAT3|p.V237A|1|0.41|ENSG00000149541|chr11:62616705-62616705|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23651123046875 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 101.66 1 97.641 97.141 98.141 -4.0212 0 0 0 0.21323 1 19535 19535 14.582 5.2343 1 35320 288 23795 23810 34685 34685 -0.01620514484955038 QDGSFFAT 8 Unmodified _QDGSFFAT_ 0 0 0 REV__nc|ENSG00000136104|Q5TBB1-2|RNASEH2B REV__nc|ENSG00000136104|Q5TBB1-2|RNASEH2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21514892578125 2 436.692875 871.371197 -0.074451 -3.2512E-05 0.49301 0.00021529 0.41856 0.00018278 436.6941030243072 107.33 0.96598 102.92 102.44 103.4 -4.4121 119 27 6 0 0 0 0.5707 1 20618 20618 24.021 24.021 1 10318000 + 35321 16312 23796 23811 34686 34686 -0.0696332933305257 QDGSFSLAR 9 Unmodified _QDGSFSLAR_ 0 0 0 ITGAE|p.L601Pfs*8|1|0.31|ENSG00000083457|chr17:3751741-3751742|-/G|frameshift_variant;ITGAE|p.I909Lfs*19|1|0.09|ENSG00000083457|chr17:3732398-3732398|C/-|frameshift_variant;ENSG00000083457|ENST00000263087|ITGAE ITGAE|p.L601Pfs*8|1|0.31|ENSG00000083457|chr17:3751741-3751742|-/G|frameshift_variant ITGAE|p.L601Pfs*8|1|0.31|ENSG00000083457|chr17:3751741-3751742|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2555236816406 2 490.743431 979.472308 0.52678 0.00025851 -0.52219 -0.00025626 0.0045893 2.2522E-06 490.74277212817225 46.379 0.1731 46.379 46.28 46.453 0 6 4 2 0 0 0 0.71527 1 8738 8738 19.257 3.4098 1 345890 35322 1654 23797 23812 34687 34687 -0.01824877630338051 QDGSPRLR 8 Unmodified _QDGSPRLR_ 0 0 0 ENST00000432473.1_1_22:42764777-42764903:-|nuORF ENST00000432473.1_1_22:42764777-42764903:-|nuORF ENST00000432473.1_1_22:42764777-42764903:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698303222656 3 310.170152 927.488627 NaN NaN NaN NaN NaN NaN NaN 28.888 1 28.888 28.388 29.388 0 0 0 0 0.21486 1 5144 5144 3.2813 1.4371 1 35323 9798 23798 23813 34688 34688 0.021982483264196162 QDGTSPEVQ 9 Unmodified _QDGTSPEVQ_ 0 0 0 ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENST00000467978.1_1_2:37268272-37283611:-|nuORF ENSG00000008869|ENST00000233099|HEATR5B ENSG00000008869|ENST00000233099|HEATR5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2461853027344 2 480.717079 959.419604 -0.35374 -0.00017005 0.42934 0.00020639 0.075597 3.6341E-05 480.7173271010574 37.34 0.82539 34.872 34.398 35.223 -2.4688 31 23 2 0 0 0 0.36034 1 6892 6892 8.1555 0 1 513310 35324 1049 23799 23814 34689 34689 -0.06172880483802601 QDGVRCPV 8 Unmodified _QDGVRCPV_ 0 0 0 REV__ENST00000543744.1_1_12:7061038-7061341:+|nuORF REV__ENST00000543744.1_1_12:7061038-7061341:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21673583984375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 175.41 1 170.62 170.12 171.12 -4.7898 0 0 0 0.21486 1 35863 35863 2.3027 0 1 + 35325 21464 23800 23815 34690 34690 -0.023875877026057424 QDGYSYCK 8 Unmodified _QDGYSYCK_ 0 0 0 CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR CON__Q86YZ3 CON__Q86YZ3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.769287109375 2 482.197467 962.380382 0.27055 0.00013046 -1.4016 -0.00067586 -1.1311 -0.0005454 482.1980822412355 33.411 0.35168 31.264 31.041 31.393 -2.1468 13 9 3 0 0 0 0.50387 1 5816 5816 20.454 0 1 441510 + 35326 703 23801 23816 34691 34691 -0.10231304039029965 QDHASTDDDIK 11 Unmodified _QDHASTDDDIK_ 0 0 0 REV__TIMELESS|p.A183T|1|0.22|ENSG00000111602|chr12:56432509-56432509|C/T|missense_variant REV__TIMELESS|p.A183T|1|0.22|ENSG00000111602|chr12:56432509-56432509|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7766723632812 2 622.773113 1243.53167 NaN NaN NaN NaN NaN NaN NaN 169.06 1 164.13 163.63 164.63 -4.9295 0 0 0 0.22765 1 33361 33361 10.151 1.5573 1 + 35327 24804 23802 23817 34692 34692 -0.08035071197491561 QDIDVLHKR 9 Unmodified _QDIDVLHKR_ 0 0 0 nc|ENSG00000163629|Q12923-2|PTPN13 nc|ENSG00000163629|Q12923-2|PTPN13 nc|ENSG00000163629|Q12923-2|PTPN13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2123107910156 3 375.212128 1122.61456 -0.10911 -4.0939E-05 0.46562 0.00017471 0.35651 0.00013377 375.2121346973518 22.506 0.35214 21.053 20.838 21.19 -1.4535 16 9 2 0 0 0 0.42432 1 3616 3616 0.12781 0 1 362920 35328 12419 23803 23818 34693 34693 0.05815335111856257 QDILNHRVA 9 Unmodified _QDILNHRVA_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2610473632812 2 533.293622 1064.57269 0.61025 0.00032544 -0.63093 -0.00033647 -0.020681 -1.1029E-05 533.2932311633585 33.046 0.53157 30.899 30.655 31.187 -2.1468 30 14 3 0 0 0 0.82765 1 5789 5789 1.1933 0 1 1762300 + 35329 15894 23804 23819 34694 34694 0.042987794233113164 QDISLLGC 8 Unmodified _QDISLLGC_ 0 0 0 REV__CD180|p.A649Cfs*3|1|0.26|ENSG00000134061|chr5:67182898-67182899|-/A|frameshift_variant REV__CD180|p.A649Cfs*3|1|0.26|ENSG00000134061|chr5:67182898-67182899|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2530212402344 2 424.712753 847.410954 0.43046 0.00018282 0.77777 0.00033033 1.2082 0.00051315 424.7129675795938 107.16 2.3189 103.03 101.46 103.77 -4.135 93 66 2 0 0 0 0.98792 1 20728 20728 14.582 0 1 13160000 + 35330 13325 23805 23820 34695 34695 -0.018855256539723086 QDKITTRTVIV 11 Unmodified _QDKITTRTVIV_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2532043457031 3 425.253993 1272.74015 NaN NaN NaN NaN NaN NaN NaN 107.87 1 103.55 103.05 104.05 -4.32 0 0 0 0.22942 1 21250 21250 8.7518 3.8548 1 + 35331 16048 23806 23821 34696 34696 0.11469002177409493 QDKLSIVK 8 Unmodified _QDKLSIVK_ 0 0 0 REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|54|2|sense REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|54|2|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2574462890625 2 465.784567 929.554582 0.3161 0.00014723 -0.46682 -0.00021744 -0.15072 -7.0205E-05 465.78428900693814 50.152 0.44379 50.152 49.893 50.337 0 30 12 3 0 0 0 0.93121 1 9527 9527 7.609 0 1 4084600 + 35332 23775 23807 23822 34697 34697 0.08698644448600135 QDKTLLSL 8 Unmodified _QDKTLLSL_ 0 0 0 ENSG00000173451|ENST00000308086|THAP2 ENSG00000173451|ENST00000308086|THAP2 ENSG00000173451|ENST00000308086|THAP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2606506347656 2 459.26875 916.522947 -0.061114 -2.8068E-05 0.3036 0.00013944 0.24249 0.00011137 459.26882654383206 138.74 0.74237 134.09 133.7 134.45 -4.6439 48 20 3 0 0 0 8448 1 27418 27418 8.966 0 1 9695300 35333 6294 23808 23823 34698 34698 0.06134651694674176 QDKVQNFQS 9 Unmodified _QDKVQNFQS_ 0 0 0 ENST00000577961.5_1_18:732902-736828:-|nuORF ENST00000577961.5_1_18:732902-736828:-|nuORF ENST00000577961.5_1_18:732902-736828:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7685546875 2 547.26727 1092.51999 0.13261 7.2573E-05 0.65281 0.00035726 0.78542 0.00042983 547.2677413858563 44.022 1.0089 41.231 40.736 41.745 -2.79 65 28 4 0 0 0 0.54076 2 8252 8252;8296 17.113 0.96379 1 5114600 35334 11471 23809 23824 34699;34700 34699 -0.022572234301378558 QDLEAKTKD 9 Unmodified _QDLEAKTKD_ 0 0 0 REV__DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant REV__DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6943359375 2 524.269478 1046.5244 -0.02056 -1.0779E-05 -0.41107 -0.00021551 -0.43163 -0.00022629 524.2691726401755 49.919 0.43708 46.912 46.705 47.142 -3.0068 22 12 2 0 0 0 0.80264 1 9121 9121 17.113 9.5039 1 1025400 + 35335 13739 23810 23825 34701 34701 0.0030024099276033667 QDLEQAKAY 9 Unmodified _QDLEQAKAY_ 0 0 0 CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B;ENST00000460261.5_1_1:52822810-52825784:-|nuORF;ENST00000491136.6_1_1:52820057-52823576:-|nuORF;nc|ENSG00000154222|Q5T0F9-3|CC2D1B CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2640991210938 2 533.264196 1064.51384 0.24626 0.00013132 -0.47714 -0.00025444 -0.23088 -0.00012312 533.2640824827868 83.597 0.49491 83.597 83.361 83.856 0 18 13 2 0 0 0 0.48707 1 16322 16322 20.415 1.0526 1 2571600 35336 404 23811 23826 34702 34702 -0.015837416616705013 QDLEQAKAY 9 Unmodified _QDLEQAKAY_ 0 0 0 CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B;ENST00000460261.5_1_1:52822810-52825784:-|nuORF;ENST00000491136.6_1_1:52820057-52823576:-|nuORF;nc|ENSG00000154222|Q5T0F9-3|CC2D1B CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2640991210938 2 533.264196 1064.51384 0.71045 0.00037886 -1.3319 -0.00071024 -0.62143 -0.00033138 533.2635982273583 87.722 0.52773 83.727 83.447 83.975 -3.9953 17 14 2 0 0 0 0.30618 1 16712 16712 31.268 0.6318 1 1672700 35337 404 23811 23826 34703 34703 -0.015837416616705013 QDLEQQCP 8 Unmodified _QDLEQQCP_ 0 0 0 REV__ENSG00000115457|ENST00000233809|IGFBP2 REV__ENSG00000115457|ENST00000233809|IGFBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2509765625 2 480.708199 959.401846 0.010763 5.1739E-06 1.1342 0.0005452 1.1449 0.00055037 480.7088550712062 46.333 0.41746 43.468 43.24 43.657 -2.8653 16 11 2 0 0 0 0.54916 1 8402 8402 25.399 2.663 1 1427100 + 35338 15431 23812 23827 34704 34704 -0.07947919010314308 QDLIAGGVT 9 Unmodified _QDLIAGGVT_ 0 0 0 REV__nc|ENSG00000094631|Q9UBN7-2|HDAC6 REV__nc|ENSG00000094631|Q9UBN7-2|HDAC6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2286682128906 2 437.23745 872.460347 0.21359 9.3391E-05 -0.42673 -0.00018658 -0.21314 -9.3192E-05 437.2371535869417 86.126 1.1554 82.176 81.771 82.926 -3.9503 44 32 2 0 0 0 0.39231 1 16420 16420 6.4869 0 1 1968500 + 35339 14594 23813 23828 34705 34705 0.019015056264720442 QDLKPENIL 9 Unmodified _QDLKPENIL_ 0 0 0 PHKG2|p.R152Q|1|0.27|ENSG00000156873|chr16:30753456-30753456|G/A|missense_variant PHKG2|p.R152Q|1|0.27|ENSG00000156873|chr16:30753456-30753456|G/A|missense_variant PHKG2|p.R152Q|1|0.27|ENSG00000156873|chr16:30753456-30753456|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.552001953125 3 357.201118 1068.58152 0.080157 2.8632E-05 -0.044975 -1.6065E-05 0.035182 1.2567E-05 357.2012076794981 58.089 0.16604 54.837 54.761 54.927 -3.2517 6 4 2 0 0 0 0.5685 1 10795 10795 15.248 0 1 378390 35340 12785 23814 23829 34706 34706 0.04997708269138457 QDLLCEIEDSP 11 Unmodified _QDLLCEIEDSP_ 0 0 0 nc|ENSG00000008226|Q9Y238-2|DLEC1;DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant;DLEC1|p.Y1310Mfs*121|1|0.59|ENSG00000008226|chr3:38116521-38116521|T/-|frameshift_variant;ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1 nc|ENSG00000008226|Q9Y238-2|DLEC1 nc|ENSG00000008226|Q9Y238-2|DLEC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7503051757812 2 631.284468 1260.55438 0.51984 0.00032816 -2.0024 -0.0012641 -1.4826 -0.00093592 631.7845029259688 98.208 0.52251 98.208 97.81 98.333 0 23 14 2 0 0 0 0.94841 1 19183 19183 4.1895 0 1 2145200 35341 844 23815 23830 34707 34707 -0.06547188124204695 QDLLLASAM 9 Unmodified _QDLLLASAM_ 0 0 0 REV__ENST00000510524.5_1_3:129170769-129177513:+|nuORF REV__ENST00000510524.5_1_3:129170769-129177513:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2542419433594 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 148.15 1 143.44 142.94 143.94 -4.7095 0 0 0 0.23508 1 29413 29413 8.1555 1.4324 1 + 35342 22539 23816 23831 34708 34708 0.013190054429287557 QDLLRECPN 9 Unmodified _QDLLRECPN_ 0 0 0 WDR33|p.P989Lfs*292|1|0.28|ENSG00000136709|chr2:127713927-127713927|C/-|frameshift_variant;WDR33|p.D1065Mfs*216|1|0.47|ENSG00000136709|chr2:127713698-127713698|C/-|frameshift_variant WDR33|p.P989Lfs*292|1|0.28|ENSG00000136709|chr2:127713927-127713927|C/-|frameshift_variant WDR33|p.P989Lfs*292|1|0.28|ENSG00000136709|chr2:127713927-127713927|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7822875976562 2 544.263673 1086.51279 0.45328 0.00024671 1.1325 0.00061638 1.5858 0.00086308 544.7675860080457 120.24 0.27437 115.77 115.68 115.95 -4.467 9 7 2 0 0 0 0.52242 1 23136 23136 29.082 7.3349 1 1153400 35343 26576 23817 23832 34709 34709 -0.02700279302234776 QDLNLTLVK 9 Unmodified _QDLNLTLVK_ 0 0 0 REV__CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant;REV__ENSG00000182578|ENST00000675795|CSF1R REV__ENSG00000182578|ENST00000675795|CSF1R MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2686767578125 2 522.308406 1042.60226 NaN NaN NaN NaN NaN NaN NaN 110.69 1 110.69 110.19 111.19 0 0 0 0 0.23508 1 21770 21770 7.2892 0 1 + 35344 13590;18788 23818 23833 34710 34710 0.08266298648823067 QDLRALSI 8 Unmodified _QDLRALSI_ 0 0 0 SCN9A|p.P7Qfs*83|1|0.41|ENSG00000169432|chr2:166311737-166311737|G/-|frameshift_variant;ENST00000409672.5_2_2:167163577-167168274:-|nuORF SCN9A|p.P7Qfs*83|1|0.41|ENSG00000169432|chr2:166311737-166311737|G/-|frameshift_variant SCN9A|p.P7Qfs*83|1|0.41|ENSG00000169432|chr2:166311737-166311737|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.238037109375 2 458.266542 914.51853 NaN NaN NaN NaN NaN NaN NaN 108.02 1 103.89 103.39 104.39 -4.135 0 0 0 0.2074 1 20781 20781 19.439 0 1 35345 9566 23819 23834 34711 34711 0.05785187271760606 QDLRWYRDDRF 11 Unmodified _QDLRWYRDDRF_ 0 0 0 REV__ENSG00000271447|ENST00000605424|MMP28 REV__ENSG00000271447|ENST00000605424|MMP28 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3821411132812 2 785.381488 1568.74842 NaN NaN NaN NaN NaN NaN NaN 86.784 1 86.784 86.284 87.284 0 0 0 0 0.23698 1 16936 16936 1.1933 0 1 + 35346 19915 23820 23835 34712 34712 -0.01320050853291832 QDLRWYRDDRF 11 Unmodified _QDLRWYRDDRF_ 0 0 0 REV__ENSG00000271447|ENST00000605424|MMP28 REV__ENSG00000271447|ENST00000605424|MMP28 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.37890625 2 785.381488 1568.74842 NaN NaN NaN NaN NaN NaN NaN 35.31 1 33.033 32.533 33.533 -2.2766 0 0 0 0.23698 1 6205 6205 0.96228 0.61164 1 + 35347 19915 23820 23835 34713 34713 -0.01320050853291832 QDLRWYRDDRF 11 Unmodified _QDLRWYRDDRF_ 0 0 0 REV__ENSG00000271447|ENST00000605424|MMP28 REV__ENSG00000271447|ENST00000605424|MMP28 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3829345703125 2 785.381488 1568.74842 NaN NaN NaN NaN NaN NaN NaN 125.87 1 121.22 120.72 121.72 -4.6495 0 0 0 0.22632 1 24219 24219 0.00056442 0 1 + 35348 19915 23820 23835 34714 34714 -0.01320050853291832 QDLSIIYK 8 Unmodified _QDLSIIYK_ 0 0 0 REV__ENSG00000134247|ENST00000393203|PTGFRN REV__ENSG00000134247|ENST00000393203|PTGFRN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2763366699219 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 69.741 1 69.741 69.241 70.241 0 0 0 0 0.17344 1 13502 13502 34.102 7.2188 1 + 35349 16199 23821 23836 34715 34715 0.04846938211710494 QDLVFLLL 8 Unmodified _QDLVFLLL_ 0 0 0 nc|ENSG00000163322|Q6UWZ7-2|ABRAXAS1;ENSG00000163322|ENST00000321945|ABRAXAS1 nc|ENSG00000163322|Q6UWZ7-2|ABRAXAS1 nc|ENSG00000163322|Q6UWZ7-2|ABRAXAS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24383544921875 2 480.791861 959.569169 NaN NaN NaN NaN NaN NaN NaN 120.33 1 115.81 115.31 116.31 -4.5221 0 0 0 0.20462 1 23726 23726 21.747 0 1 35350 5414 23822 23837 34716 34716 0.087767165967648 QDLVQKSI 8 Unmodified _QDLVQKSI_ 0 0 0 REV__POLR3C|p.T412Hfs*15|1|0.39|ENSG00000186141|chr1:145839899-145839899|A/-|frameshift_variant REV__POLR3C|p.T412Hfs*15|1|0.39|ENSG00000186141|chr1:145839899-145839899|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24847412109375 2 465.766374 929.518196 -0.1988 -9.2596E-05 -0.26389 -0.00012291 -0.4627 -0.00021551 465.7662759017883 62.889 0.7073 62.889 62.589 63.296 0 40 19 3 0 0 0 0.96284 1 12157 12157 2.0598 0 1 4831300 + 35351 19015 23823 23838 34717 34717 0.05061767551910634 QDMFLHLLY 9 Unmodified _QDMFLHLLY_ 0 0 0 PGM2L1|p.S149Qfs*22|1|0.29|ENSG00000165434|chr11:74370928-74370928|A/-|frameshift_variant PGM2L1|p.S149Qfs*22|1|0.29|ENSG00000165434|chr11:74370928-74370928|A/-|frameshift_variant PGM2L1|p.S149Qfs*22|1|0.29|ENSG00000165434|chr11:74370928-74370928|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.251953125 2 590.296985 1178.57942 0.19952 0.00011778 1.8057 0.0010659 2.0052 0.0011837 590.2966430542183 132.13 0.20828 127.33 127.25 127.46 -4.799 6 5 2 0 0 0 0.8319 1 25434 25434 1.8442 1.4435 1 1432600 35352 12778 23824 23839 34718 34718 -0.002730437402988173 QDNCGDGEDE 10 Unmodified _QDNCGDGEDE_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1;LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27587890625 2 541.172375 1080.3302 -0.030093 -1.6286E-05 -0.99739 -0.00053976 -1.0275 -0.00055605 541.1715063635338 67.73 0.31255 67.73 67.477 67.79 0 12 8 2 0 0 0 0.91149 1 13044 13044 3.5965 0 1 1069400 35353 3265 23825 23840 34719 34719 -0.20675503225470493 QDNKYSEE 8 Unmodified _QDNKYSEE_ 0 0 0 REV__tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1 REV__tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1014.4274291992188 1 1012.4218 1011.41452 0.57149 0.00057859 -0.58572 -0.000593 -0.014231 -1.4408E-05 1012.4211829395687 24.386 0.81552 24.386 23.998 24.813 0 52 23 3 0 0 0 0.7999 1 4211 4211 4.3292 0 1 2851200 + 35354 25285 23826 23841 34720 34720 -0.09073184346425478 QDNKYSEE 8 Unmodified _QDNKYSEE_ 0 0 0 REV__tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1 REV__tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 1012.4218 1011.41452 0.57149 0.00057859 -0.58572 -0.000593 -0.014231 -1.4408E-05 1012.4211829395687 24.386 0.81552 24.386 23.998 24.813 0 -0.0060635 9.3735E-05 NaN 4.3292 52 23 3 NaN NaN NaN NaN 0 NaN NaN 0 2851200 + 35355 25285 23826 23841 -0.09073184346425478 QDNKYSEE 8 Unmodified _QDNKYSEE_ 0 0 0 REV__tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1 REV__tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 1012.4218 1011.41452 1.0326 0.0010454 -0.76901 -0.00077856 0.2636 0.00026688 1012.42101981586 26.046 0.7881 24.398 23.966 24.754 -1.6482 0.0060635 -9.1829E-05 NaN 4.3292 49 22 3 NaN NaN NaN NaN 0 NaN NaN 0 2265600 + 35356 25285 23826 23841 -0.09073184346425478 QDNVLGLVV 9 Unmodified _QDNVLGLVV_ 0 0 0 REV__nc|ENSG00000186191|P59827-2|BPIFB4 REV__nc|ENSG00000186191|P59827-2|BPIFB4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7261962890625 2 478.7742 955.533846 -0.10055 -4.8142E-05 0.39132 0.00018735 0.29077 0.00013921 478.7742514921349 47.154 0.89858 44.204 43.739 44.638 -2.9499 65 25 4 0 0 0 0.36034 1 8637 8637 29.082 0 1 7648800 + 35357 19019 23827 23842 34721 34721 0.054300540689382615 QDPAKLMAAH 10 Unmodified _QDPAKLMAAH_ 0 0 0 ADAMTS10|p.P552Rfs*85|1|0.35|ENSG00000142303|chr19:8592038-8592038|C/-|frameshift_variant;ADAMTS10|p.K584Qfs*6|1|0.27|ENSG00000142303|chr19:8591848-8591849|-/C|frameshift_variant;ADAMTS10|p.Q765Sfs*7|1|0.36|ENSG00000142303|chr19:8586668-8586668|G/-|frameshift_variant;nc|ENSG00000142303|Q9H324|ADAMTS10;ENSG00000142303|ENST00000597188|ADAMTS10 ADAMTS10|p.P552Rfs*85|1|0.35|ENSG00000142303|chr19:8592038-8592038|C/-|frameshift_variant ADAMTS10|p.P552Rfs*85|1|0.35|ENSG00000142303|chr19:8592038-8592038|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.278076171875 2 541.276583 1080.53861 NaN NaN NaN NaN NaN NaN NaN 50.021 1 47.022 46.522 47.522 -2.999 0 0 0 2.8426 1 9154 9154 1.0651 0 1 35358 60 23828 23843 34722 34722 0.0015661494005598797 QDPKIHVLE 9 Unmodified _QDPKIHVLE_ 0 0 0 REV__nc|ENSG00000124067|Q9UP95-5|SLC12A4 REV__nc|ENSG00000124067|Q9UP95-5|SLC12A4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 81.484 1 77.645 77.145 78.145 -3.8392 0 0 0 0.23508 1 15472 15472 4.5289 0 1 + 35359 15748 23829 23844 34723 34723 0.0461712798901317 QDPKIHVLE 9 Unmodified _QDPKIHVLE_ 0 0 0 REV__nc|ENSG00000124067|Q9UP95-5|SLC12A4 REV__nc|ENSG00000124067|Q9UP95-5|SLC12A4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20123291015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 84.536 1 80.824 80.324 81.324 -3.7117 0 0 0 0.23508 1 16148 16148 4.1895 1.4543 1 + 35360 15748 23829 23844 34724 34724 0.0461712798901317 QDPKIHVLE 9 Unmodified _QDPKIHVLE_ 0 0 0 REV__nc|ENSG00000124067|Q9UP95-5|SLC12A4 REV__nc|ENSG00000124067|Q9UP95-5|SLC12A4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 87.635 1 83.885 83.385 84.385 -3.7501 0 0 0 0.23508 1 16767 16767 4.1895 0 1 + 35361 15748 23829 23844 34725 34725 0.0461712798901317 QDPLSRHPP 9 Unmodified _QDPLSRHPP_ 0 0 0 SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant;SPATA31A6|p.N1191Tfs*16|1|0.12|ENSG00000185775|chr9:42189269-42189269|A/-|frameshift_variant;ENSG00000185775|ENST00000332857|SPATA31A6 SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.69873046875 2 523.772522 1045.53049 -0.045153 -2.365E-05 -0.48906 -0.00025616 -0.53421 -0.00027981 523.7724872636145 46.681 0.59331 43.814 43.577 44.17 -2.8666 28 16 2 0 0 0 0.6329 1 8526 8526 10.824 0 1 920410 35362 7010 23830 23845 34726 34726 0.00954804014918409 QDPSQHSY 8 Unmodified _QDPSQHSY_ 0 0 0 ENSG00000156453|ENST00000287008|PCDH1 ENSG00000156453|ENST00000287008|PCDH1 ENSG00000156453|ENST00000287008|PCDH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23687744140625 2 481.204138 960.393724 NaN NaN NaN NaN NaN NaN NaN 53.139 1 50.043 49.543 50.543 -3.0954 0 0 0 0.21486 1 9821 9821 9.3474 0 1 35363 5089 23831 23846 34727 34727 -0.08805729935420459 QDPTQWGP 8 Unmodified _QDPTQWGP_ 0 0 0 ENST00000470907.6_1_2:74762850-74763156:-|nuORF ENST00000470907.6_1_2:74762850-74763156:-|nuORF ENST00000470907.6_1_2:74762850-74763156:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2582092285156 2 464.711599 927.408646 -0.044293 -2.0584E-05 1.8858 0.00087636 1.8415 0.00085578 464.71301735564714 53.554 0.40362 50.458 50.175 50.579 -3.0954 12 11 2 0 0 0 0.99494 1 9880 9880 4.756 0 1 671690 35364 10205 23832 23847 34728 34728 -0.057962380674325686 QDPVALQGRV 10 Unmodified _QDPVALQGRV_ 0 0 0 ENST00000470209.5_1_X:153173185-153178999:-|nuORF;ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4;ENST00000461739.1_1_X:153175506-153175857:-|nuORF ENST00000470209.5_1_X:153173185-153178999:-|nuORF ENST00000470209.5_1_X:153173185-153178999:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2823486328125 2 541.80128 1081.58801 0.079478 4.3061E-05 -0.23722 -0.00012852 -0.15774 -8.5463E-05 541.8011814702104 49.874 0.38118 46.875 46.689 47.071 -2.999 18 10 2 0 0 0 0.82238 1 9111 9111 17.113 4.8722 1 748030 35365 1770 23833 23848 34729 34729 0.05047646220509705 QDQDDMADK 9 Unmodified _QDQDDMADK_ 0 0 0 MGA|p.E1410D|1|0.39|ENSG00000174197|chr15:41736494-41736494|G/T|missense_variant MGA|p.E1410D|1|0.39|ENSG00000174197|chr15:41736494-41736494|G/T|missense_variant MGA|p.E1410D|1|0.39|ENSG00000174197|chr15:41736494-41736494|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2640380859375 2 533.211303 1064.40805 0.098553 5.255E-05 -3.3621 -0.0017927 -3.2636 -0.0017402 533.2083748086087 125.18 0.17742 125.18 125.11 125.29 0 5 4 2 0 0 0 0.80521 1 24708 24708 15.847 6.4641 1 899020 35366 12139 23834 23849 34730 34730 -0.12157445569459924 QDQLWSPG 8 Unmodified _QDQLWSPG_ 0 0 0 ATP4B|p.R78W|1|0.41|ENSG00000186009|chr13:113654823-113654823|G/A|missense_variant ATP4B|p.R78W|1|0.41|ENSG00000186009|chr13:113654823-113654823|G/A|missense_variant ATP4B|p.R78W|1|0.41|ENSG00000186009|chr13:113654823-113654823|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2582092285156 2 465.719424 929.424296 -0.043674 -2.034E-05 0.93733 0.00043653 0.89365 0.00041619 465.71970197977646 53.538 0.33706 50.443 50.207 50.544 -3.0954 12 9 2 0 0 0 0.97966 1 9880 9880 7.2892 0 1 772370 35367 271 23835 23850 34731 34731 -0.043239515503842085 QDQMPPEA 8 Unmodified _QDQMPPEA_ 0 0 0 MYF6|p.D55G|1|0.19|ENSG00000111046|chr12:80707883-80707883|A/G|missense_variant;ENSG00000111046|ENST00000228641|MYF6 MYF6|p.D55G|1|0.19|ENSG00000111046|chr12:80707883-80707883|A/G|missense_variant MYF6|p.D55G|1|0.19|ENSG00000111046|chr12:80707883-80707883|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2392578125 2 458.197467 914.380382 0.66398 0.00030424 0.38473 0.00017628 1.0487 0.00048052 458.1976604102982 108.75 0.87003 104.57 104.15 105.02 -4.1826 47 24 3 0 0 0 0.62642 1 20919 20919 20.454 1.0146 1 3053900 35368 2601 23836 23851 34732 34732 -0.08023304039022605 QDQPWSNIY 9 Unmodified _QDQPWSNIY_ 0 0 0 HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3279418945312 2 575.76182 1149.50909 -0.52125 -0.00030012 0.93315 0.00053727 0.4119 0.00023715 575.7621820078948 108.33 0.483 104.01 103.76 104.24 -4.32 21 13 2 0 0 0 0.50419 1 21330 21330 19.362 4.5237 1 1245500 35369 11929 23837 23852 34733 34733 -0.05968625804416661 QDRGGVAF 8 Unmodified _QDRGGVAF_ 0 0 0 REV__ENSG00000132716|ENST00000368074|DCAF8 REV__ENSG00000132716|ENST00000368074|DCAF8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2500305175781 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 43.854 1 41.106 40.606 41.606 -2.7475 0 0 0 0.23107 1 7930 7930 0.063987 0 1 + 35370 16130 23838 23853 34734 34734 -0.01620514484955038 QDRLERWL 8 Unmodified _QDRLERWL_ 0 0 0 REV__ENSG00000157353|ENST00000288078|FCSK REV__ENSG00000157353|ENST00000288078|FCSK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 372.1059265136719 3 372.536724 1114.58834 -0.7666 -0.00028559 0.28207 0.00010508 -0.48452 -0.0001805 372.5368671611966 48.966 0.61824 45.959 45.555 46.173 -3.0068 21 17 2 0 0 0 1.0278 1 8989 8989 0 0 1 594080 + 35371 17294 23839 23854 34735 34735 0.03563065940375054 QDRLLFGL 8 Unmodified _QDRLLFGL_ 0 0 0 REV__ENSG00000188897|ENST00000696174|unknown REV__ENSG00000188897|ENST00000696174|unknown MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7653503417969 2 481.276909 960.539266 0.028372 1.3655E-05 0.078599 3.7828E-05 0.10697 5.1483E-05 481.27695501245694 60.203 1.8683 57.27 56.469 58.337 -2.9333 76 53 2 0 0 0 0.72428 1 11645 11645 10.824 0 1 1561600 + 35372 19178 23840 23855 34736 34736 0.05741777651439861 QDRNGCGAEP 10 Unmodified _QDRNGCGAEP_ 0 0 0 REV__ENST00000473905.6_1_1:155026903-155028315:+|nuORF REV__ENST00000473905.6_1_1:155026903-155028315:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6993408203125 2 523.71963 1045.42471 -0.47288 -0.00024766 1.1641 0.00060966 0.69121 0.000362 524.2212312746949 138.65 0.56059 133.7 133.46 134.02 -4.952 21 15 2 0 0 0 0.71778 1 26650 26650 9.3831 0.035688 1 1647700 + 35373 22076 23841 23856 34737 34737 -0.09618899892825539 QDRQRTWG 8 Unmodified _QDRQRTWG_ 0 0 0 REV__ENST00000600463.1_1_19:18285864-18288180:+|nuORF REV__ENST00000600463.1_1_19:18285864-18288180:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.5220031738281 3 349.509056 1045.50534 NaN NaN NaN NaN NaN NaN NaN 30.907 1 28.881 28.381 29.381 -2.0264 0 0 0 0.23107 1 5317 5317 0.063987 0.034705 1 + 35374 23410 23842 23857 34738 34738 -0.015592507876363015 QDRTALYL 8 Unmodified _QDRTALYL_ 0 0 0 REV__ENST00000273859.7_1_4:47487394-47514558:+|nuORF REV__ENST00000273859.7_1_4:47487394-47514558:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26324462890625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 73.514 1 69.837 69.337 70.337 -3.6764 0 0 0 0.21486 1 13892 13892 12.532 0 1 + 35375 20283 23843 23858 34739 34739 0.02332883409110309 QDSAGMGRIF 10 Unmodified _QDSAGMGRIF_ 0 0 0 ENSG00000206026|ENST00000579022|SMIM21 ENSG00000206026|ENST00000579022|SMIM21 ENSG00000206026|ENST00000579022|SMIM21 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2598266601562 2 541.258391 1080.50223 NaN NaN NaN NaN NaN NaN NaN 130.05 1 125.42 124.92 125.92 -4.6359 0 0 0 0.22552 1 25630 25630 18.146 4.2403 1 35376 7662 23844 23859 34740 34740 -0.0348026195665625 QDSAGMGRIF 10 Unmodified _QDSAGMGRIF_ 0 0 0 ENSG00000206026|ENST00000579022|SMIM21 ENSG00000206026|ENST00000579022|SMIM21 ENSG00000206026|ENST00000579022|SMIM21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2589721679688 2 541.258391 1080.50223 NaN NaN NaN NaN NaN NaN NaN 130.32 1 125.55 125.05 126.05 -4.7725 0 0 0 0.22588 1 25080 25080 13.042 3.6593 1 35377 7662 23844 23859 34741 34741 -0.0348026195665625 QDSANLLI 8 Unmodified _QDSANLLI_ 0 0 0 nc|ENSG00000198689|Q92581-3|SLC9A6;nc|ENSG00000198689|Q92581-1|SLC9A6;ENSG00000198689|ENST00000630721|SLC9A6;nc|ENSG00000198689|Q92581|SLC9A6 nc|ENSG00000198689|Q92581-3|SLC9A6 nc|ENSG00000198689|Q92581-3|SLC9A6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2359619140625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.769 1 60.512 60.012 61.012 -3.2567 0 0 0 0.21171 1 11966 11966 15.847 0 1 35378 7472 23845 23860 34742 34742 0.019015056264720442 QDSEVVSR 8 Unmodified _QDSEVVSR_ 0 0 0 REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22650146484375 2 460.227613 918.440674 NaN NaN NaN NaN NaN NaN NaN 61.943 1 58.574 58.074 59.074 -3.3694 0 0 0 0.20344 1 11555 11555 28.487 0 1 + 35379 17748 23846 23861 34743 34743 -0.021808703842793875 QDSFHEDGS 9 Unmodified _QDSFHEDGS_ 0 0 0 ENSG00000174576|ENST00000311034|NPAS4 ENSG00000174576|ENST00000311034|NPAS4 ENSG00000174576|ENST00000311034|NPAS4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.4676818847656 3 341.133432 1020.37847 -0.49733 -0.00016966 0.61032 0.0002082 0.11299 3.8543E-05 341.13438008068186 54.378 2.0686 51.494 50.908 52.977 -2.8837 117 59 3 0 0 0 0.6109 1 10534 10534 0.12781 0 1 8631200 35380 6358 23847 23862 34744 34744 -0.1309064152327437 QDSGCIPE 8 Unmodified _QDSGCIPE_ 0 0 0 REV__ENSG00000229453|ENST00000434006|SPINK8 REV__ENSG00000229453|ENST00000434006|SPINK8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2560729980469 2 424.676368 847.338183 0.31666 0.00013448 0.95774 0.00040673 1.2744 0.00054121 424.67657355427195 69.033 0.61515 65.496 65.184 65.799 -3.5362 29 16 2 0 0 0 0.98676 1 12987 12987 3.5965 3.0717 1 1747000 + 35381 19740 23848 23863 34745 34745 -0.09159279447408153 QDSIKEFP 8 Unmodified _QDSIKEFP_ 0 0 0 REV__MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant REV__MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7884826660156 2 482.242732 962.470912 -0.091368 -4.4061E-05 -1.5701 -0.00075717 -1.6615 -0.00080123 482.2424836060975 50.543 0.42844 47.662 47.429 47.857 -2.8811 19 11 2 0 0 0 0.86749 1 9620 9620 28.487 0 1 782200 + 35382 14473 23849 23864 34746 34746 -0.011825117190937817 QDSIKEFP 8 Unmodified _QDSIKEFP_ 0 0 0 REV__MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant REV__MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 482.242732 962.470912 0.081523 3.9314E-05 -1.0517 -0.00050717 -0.97016 -0.00046785 482.2429955671113 50.685 0.31084 47.639 47.424 47.735 -3.0453 0.041209 0.00038034 NaN 28.487 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 720860 + 35383 14473 23849 23864 -0.011825117190937817 QDSKNMPH 8 Unmodified _QDSKNMPH_ 0 0 0 ENST00000563180.1_1_16:85943277-85943376:+|nuORF ENST00000563180.1_1_16:85943277-85943376:+|nuORF ENST00000563180.1_1_16:85943277-85943376:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.722900390625 2 478.716359 955.418164 0.10797 5.1689E-05 0.83698 0.00040068 0.94496 0.00045237 478.71643051375656 83.326 0.60287 83.326 82.975 83.578 0 27 16 2 0 0 0 0.70613 1 16202 16202 13.508 0 1 1464200 35384 11328 23850 23865 34747 34747 -0.06132793053552632 QDSPFHCR 8 Unmodified _QDSPFHCR_ 0 0 0 ENST00000600988.1_1_19:36250047-36250251:+|nuORF ENST00000600988.1_1_19:36250047-36250251:+|nuORF ENST00000600988.1_1_19:36250047-36250251:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.4835205078125 3 330.480109 988.418499 0.062943 2.0802E-05 0.8518 0.0002815 0.91474 0.0003023 330.4803544894266 54.345 2.5545 51.21 50.801 53.356 -3.1352 172 72 3 0 0 0 8448 1 10205 10205 10.074 0 1 73690000 35385 11704 23851 23866 34748 34748 -0.07617373333698652 QDSPFHCR 8 Unmodified _QDSPFHCR_ 0 0 0 ENST00000600988.1_1_19:36250047-36250251:+|nuORF ENST00000600988.1_1_19:36250047-36250251:+|nuORF ENST00000600988.1_1_19:36250047-36250251:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 330.480109 988.418499 -0.33722 -0.00011145 1.3056 0.00043149 0.96843 0.00032005 330.4804934003525 51.721 2.1912 51.721 51.022 53.213 0 0.23508 -5.042E-05 NaN 10.074 163 61 3 NaN NaN NaN NaN 0 NaN NaN 0 48246000 35386 11704 23851 23866 -0.07617373333698652 QDSPFHCR 8 Unmodified _QDSPFHCR_ 0 0 0 ENST00000600988.1_1_19:36250047-36250251:+|nuORF ENST00000600988.1_1_19:36250047-36250251:+|nuORF ENST00000600988.1_1_19:36250047-36250251:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 330.480109 988.418499 -0.49401 -0.00016326 1.3776 0.00045527 0.88358 0.00029201 330.4805177265466 54.292 2.2716 51.409 50.872 53.144 -2.8837 -0.077763 2.0907E-05 NaN 10.074 213 65 4 NaN NaN NaN NaN 0 NaN NaN 0 106700000 35387 11704 23851 23866 -0.07617373333698652 QDSPFHCR 8 Unmodified _QDSPFHCR_ 0 0 0 ENST00000600988.1_1_19:36250047-36250251:+|nuORF ENST00000600988.1_1_19:36250047-36250251:+|nuORF ENST00000600988.1_1_19:36250047-36250251:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 330.480109 988.418499 0.062943 2.0802E-05 0.8518 0.0002815 0.91474 0.0003023 330.4803544894266 54.345 2.5545 51.21 50.801 53.356 -3.1352 -0.27618 -0.00050038 NaN 10.074 172 72 3 NaN NaN NaN NaN 0 NaN NaN 0 73690000 35388 11704 23851 23866 -0.07617373333698652 QDSPFHCR 8 Unmodified _QDSPFHCR_ 0 0 0 ENST00000600988.1_1_19:36250047-36250251:+|nuORF ENST00000600988.1_1_19:36250047-36250251:+|nuORF ENST00000600988.1_1_19:36250047-36250251:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 330.480109 988.418499 -0.71255 -0.00023548 1.6051 0.00053046 0.89256 0.00029497 330.4806145524191 54.743 2.4458 51.605 50.816 53.262 -3.1377 0.11887 0.00024648 NaN 10.074 168 69 3 NaN NaN NaN NaN 0 NaN NaN 0 64049000 35389 11704 23851 23866 -0.07617373333698652 QDSPNMEH 8 Unmodified _QDSPNMEH_ 0 0 0 REV__nc|ENSG00000156299|Q13009-2|TIAM1 REV__nc|ENSG00000156299|Q13009-2|TIAM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7410888671875 2 479.190174 956.365795 NaN NaN NaN NaN NaN NaN NaN 87.599 1 83.849 83.349 84.349 -3.7501 0 0 0 0.21171 1 16760 16760 15.847 1.2655 1 + 35390 17255 23852 23867 34749 34749 -0.1141337618715852 QDSYKQNP 8 Unmodified _QDSYKQNP_ 0 0 0 REV__ENSG00000122557|ENST00000311350|HERPUD2 REV__ENSG00000122557|ENST00000311350|HERPUD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2745056152344 2 490.227613 978.440674 -0.03573 -1.7516E-05 -0.035553 -1.7429E-05 -0.071283 -3.4945E-05 490.22757605288115 50.734 3.179 47.851 46.413 49.592 -2.8824 144 90 2 0 0 0 0.36038 1 9428 9428 34.102 5.0209 1 3563900 + 35391 15696 23853 23868 34750 34750 -0.04940870384291429 QDSYKQNP 8 Unmodified _QDSYKQNP_ 0 0 0 REV__ENSG00000122557|ENST00000311350|HERPUD2 REV__ENSG00000122557|ENST00000311350|HERPUD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26416015625 2 490.227613 978.440674 -0.30668 -0.00015034 0.21113 0.0001035 -0.095556 -4.6844E-05 490.2277288453064 50.782 3.151 47.731 46.197 49.348 -3.0517 149 90 2 0 0 0 0.45067 1 9129 9129 30.225 1.1432 1 4717000 + 35392 15696 23853 23868 34751 34751 -0.04940870384291429 QDSYKVHS 8 Unmodified _QDSYKVHS_ 0 0 0 ENSG00000114455|ENST00000467761|HHLA2 ENSG00000114455|ENST00000467761|HHLA2 ENSG00000114455|ENST00000467761|HHLA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78778076171875 2 482.230156 962.445759 0.36181 0.00017448 -0.41538 -0.00020031 -0.053572 -2.5834E-05 482.2299015207428 47.776 0.59921 47.776 47.435 48.034 0 38 16 3 0 0 0 0.86749 1 8989 8989 28.487 28.487 1 1773800 35393 2791 23854 23869 34752 34752 -0.03696566521659861 QDTDTLVGL 9 Unmodified _QDTDTLVGL_ 0 0 0 nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2;ENST00000465033.1_1_7:129098169-129100351:+|nuORF nc|ENSG00000128578|Q9ULQ0-2|STRIP2 nc|ENSG00000128578|Q9ULQ0-2|STRIP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2422790527344 2 481.245472 960.476391 -0.039409 -1.8965E-05 0.02721 1.3095E-05 -0.012199 -5.8708E-06 481.24538744658315 74.415 2.2491 71.051 69.582 71.831 -3.3643 164 63 7 0 0 0 0.48644 1 14397 14397 20.454 2.3073 1 81098000 35394 3528 23855 23870 34753 34753 -0.005428329272717747 QDTIREPG 8 Unmodified _QDTIREPG_ 0 0 0 REV__ENSG00000104356|ENST00000401707|POP1 REV__ENSG00000104356|ENST00000401707|POP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2290344238281 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 46.903 1 43.961 43.461 44.461 -2.9421 0 0 0 0.2343 1 8534 8534 0.12286 0 1 + 35395 14917 23856 23871 34754 34754 -0.0148856652166387 QDTLAQLQ 8 Unmodified _QDTLAQLQ_ 0 0 0 ENSG00000214456|ENST00000381848|PLIN5 ENSG00000214456|ENST00000381848|PLIN5 ENSG00000214456|ENST00000381848|PLIN5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2418518066406 2 458.740357 915.46616 0.22516 0.00010329 -0.027171 -1.2464E-05 0.19799 9.0828E-05 458.7403282046369 20.584 0.46403 19.188 18.964 19.428 -1.3966 29 12 3 0 0 0 1.0066 1 3413 3413 11.64 0 1 11173000 35396 7727 23857 23872 34755 34755 0.005046041381433497 QDTMSPHSY 9 Unmodified _QDTMSPHSY_ 0 0 0 ENST00000435312.5_1_17:46622508-46622688:+|nuORF ENST00000435312.5_1_17:46622508-46622688:+|nuORF ENST00000435312.5_1_17:46622508-46622688:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2830810546875 2 533.218931 1064.42331 NaN NaN NaN NaN NaN NaN NaN 66.806 1 63.479 62.979 63.979 -3.3268 0 0 0 0.23508 1 12585 12585 6.7232 0.51738 1 35397 9823 23858 23873 34756 34756 -0.10632533981583947 QDTVIYGY 8 Unmodified _QDTVIYGY_ 0 0 0 REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.233642578125 2 479.729458 957.444362 -0.050936 -2.4436E-05 -1.4736 -0.00070695 -1.5246 -0.00073138 479.728196771598 58.671 1.3208 55.761 54.963 56.284 -2.9105 133 37 5 0 0 0 0.71273 1 11242 11242 12.532 0 1 18890000 + 35398 14103 23859 23874 34757 34757 -0.036062006104316424 QDVAQKLEP 9 Unmodified _QDVAQKLEP_ 0 0 0 REV__ENST00000471359.1_1_20:25274602-25277155:+|nuORF REV__ENST00000471359.1_1_20:25274602-25277155:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.186279296875 3 343.185468 1026.53457 NaN NaN NaN NaN NaN NaN NaN 63.754 1 63.754 63.254 64.254 0 0 0 0 0.13475 1 12265 12265 1.6919 0 1 + 35399 14756 23860 23875 34758 34758 0.022368487179846852 QDVEEPEA 8 Unmodified _QDVEEPEA_ 0 0 0 ENST00000578774.1_1_17:38517261-38520175:+|nuORF ENST00000578774.1_1_17:38517261-38520175:+|nuORF ENST00000578774.1_1_17:38517261-38520175:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23028564453125 2 458.698355 915.382156 0.29062 0.00013331 -0.73741 -0.00033825 -0.44679 -0.00020494 458.6984290425288 20.899 0.52962 19.425 19.24 19.769 -1.4742 22 14 2 0 0 0 0.96284 1 3499 3499 13.508 0 1 275630 35400 11477 23861 23876 34759 34759 -0.07891971749427285 QDVEFREEE 9 Unmodified _QDVEFREEE_ 0 0 0 REV__nc|ENSG00000138434|P28290-3|ITPRID2 REV__nc|ENSG00000138434|P28290-3|ITPRID2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.271240234375 2 590.759475 1179.5044 0.64419 0.00038056 -0.48704 -0.00028772 0.15715 9.2837E-05 590.759118803378 85.735 0.62642 81.784 81.458 82.084 -3.9503 41 17 3 0 0 0 0.82765 1 16286 16286 13.906 1.6654 1 4669700 + 35401 16461 23862 23877 34760 34760 -0.07817554737812316 QDVFSALAG 9 Unmodified _QDVFSALAG_ 0 0 0 ENST00000481170.1_1_2:220369965-220370208:+|nuORF;ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA ENST00000481170.1_1_2:220369965-220370208:+|nuORF ENST00000481170.1_1_2:220369965-220370208:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7532958984375 2 454.229625 906.444697 -0.14113 -6.4104E-05 0.11405 5.1807E-05 -0.027073 -1.2297E-05 454.22963227697886 45.691 0.459 42.824 42.572 43.031 -2.8665 18 12 2 0 0 0 0.80521 1 8331 8331 3.5965 0 1 1090000 35402 4563 23863 23878 34761 34761 -0.012267808905676247 QDVFSALAG 9 Unmodified _QDVFSALAG_ 0 0 0 ENST00000481170.1_1_2:220369965-220370208:+|nuORF;ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA ENST00000481170.1_1_2:220369965-220370208:+|nuORF ENST00000481170.1_1_2:220369965-220370208:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 454.229625 906.444697 0.48847 0.00022188 -0.40377 -0.00018341 0.084701 3.8474E-05 454.22945569987075 42.91 0.51614 42.91 42.639 43.155 0 0.097234 -0.00024329 NaN 3.5965 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1274300 35403 4563 23863 23878 -0.012267808905676247 QDVFSALAG 9 Unmodified _QDVFSALAG_ 0 0 0 ENST00000481170.1_1_2:220369965-220370208:+|nuORF;ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA ENST00000481170.1_1_2:220369965-220370208:+|nuORF ENST00000481170.1_1_2:220369965-220370208:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 454.229625 906.444697 -0.11504 -5.2253E-05 -0.10924 -4.9618E-05 -0.22427 -0.00010187 454.2295450886336 45.636 0.45502 42.795 42.548 43.003 -2.8409 -0.017903 2.4287E-05 NaN 3.5965 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1692400 35404 4563 23863 23878 -0.012267808905676247 QDVFSALAG 9 Unmodified _QDVFSALAG_ 0 0 0 ENST00000481170.1_1_2:220369965-220370208:+|nuORF;ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA ENST00000481170.1_1_2:220369965-220370208:+|nuORF ENST00000481170.1_1_2:220369965-220370208:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 454.229625 906.444697 -0.068481 -3.1106E-05 -0.16395 -7.4473E-05 -0.23244 -0.00010558 454.2297415076253 45.588 0.3799 42.723 42.588 42.968 -2.8653 -0.090614 -2.5423E-05 NaN 3.5965 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 871480 35405 4563 23863 23878 -0.012267808905676247 QDVKLISLK 9 Unmodified _QDVKLISLK_ 0 0 0 REV__ENST00000487251.5_1_6:53762124-53769284:+|nuORF REV__ENST00000487251.5_1_6:53762124-53769284:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2824096679688 2 522.326599 1042.63865 NaN NaN NaN NaN NaN NaN NaN 90.663 1 86.619 86.119 87.119 -4.0443 0 0 0 0.23508 1 17272 17272 10.824 0 1 + 35406 16385 23864 23879 34762 34762 0.11903175545512568 QDVLQPPG 8 Unmodified _QDVLQPPG_ 0 0 0 ENST00000542481.1_1_11:72534943-72536417:+|nuORF ENST00000542481.1_1_11:72534943-72536417:+|nuORF ENST00000542481.1_1_11:72534943-72536417:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.1404113769531 2 427.224342 852.434132 NaN NaN NaN NaN NaN NaN NaN 60.265 1 57.042 56.542 57.542 -3.2237 0 0 0 0.21486 1 11269 11269 7.9102 2.1497 1 35407 11090 23865 23880 34763 34763 0.0020123645499552367 QDVPCSHNF 9 Unmodified _QDVPCSHNF_ 0 0 0 REV__LRP1B|p.D888V|1|0.51|ENSG00000168702|chr2:140989639-140989639|T/A|missense_variant REV__LRP1B|p.D888V|1|0.51|ENSG00000168702|chr2:140989639-140989639|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6900634765625 2 523.721641 1045.42873 NaN NaN NaN NaN NaN NaN NaN 132.39 1 127.75 127.25 128.25 -4.6399 0 0 0 0.19711 1 26098 26098 0.029283 0 1 + 35408 23812 23866 23881 34764 34764 -0.09216810399129827 QDVPVPKEGP 10 Unmodified _QDVPVPKEGP_ 0 0 0 REV__ENSG00000133997|ENST00000256379|MED6 REV__ENSG00000133997|ENST00000256379|MED6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.282470703125 2 533.282389 1064.55022 0.0096556 5.1492E-06 0.14761 7.8717E-05 0.15726 8.3866E-05 533.2824757530736 90.094 1.4208 86.234 85.542 86.963 -3.8595 119 39 4 0 0 0 0.63858 1 17729 17729 17.113 1.8644 1 12558000 + 35409 16188 23867 23882 34765 34765 0.020531352350417365 QDVPVPKEGP 10 Unmodified _QDVPVPKEGP_ 0 0 0 REV__ENSG00000133997|ENST00000256379|MED6 REV__ENSG00000133997|ENST00000256379|MED6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.282958984375 2 533.282389 1064.55022 0.7283 0.00038839 -0.59581 -0.00031774 0.13248 7.065E-05 533.2820797917628 90.257 1.4822 86.213 85.519 87.001 -4.0443 117 41 4 0 0 0 0.63858 1 17317 17317 17.113 2.2746 1 10278000 + 35410 16188 23867 23882 34766 34766 0.020531352350417365 QDVQIRGN 8 Unmodified _QDVQIRGN_ 0 0 0 REV__SCIN|p.E404D|1|0.13|ENSG00000006747|chr7:12629115-12629115|A/C|missense_variant REV__SCIN|p.E404D|1|0.13|ENSG00000006747|chr7:12629115-12629115|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2467956542969 2 465.243598 928.472643 NaN NaN NaN NaN NaN NaN NaN 67.399 1 63.903 63.403 64.403 -3.4965 0 0 0 0.21171 1 12644 12644 15.847 1.2655 1 + 35411 13881 23868 23883 34767 34767 0.005545420895259667 QDVRLIVH 8 Unmodified _QDVRLIVH_ 0 0 0 REV__ENST00000466099.1_1_20:60768659-60775121:+|nuORF REV__ENST00000466099.1_1_20:60768659-60775121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2679138183594 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 46.655 1 43.789 43.289 44.289 -2.8666 0 0 0 0.20896 1 8496 8496 18.135 0 1 + 35412 14767 23869 23884 34768 34768 0.07092582399991443 QDVTLYQL 8 Unmodified _QDVTLYQL_ 0 0 0 REV__LRRC28|p.R166Q|1|0.27|ENSG00000168904|chr15:99334034-99334034|G/A|missense_variant REV__LRRC28|p.R166Q|1|0.27|ENSG00000168904|chr15:99334034-99334034|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2584533691406 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 46.592 1 43.726 43.226 44.226 -2.8666 0 0 0 0.1328 1 8483 8483 39.957 7.6518 1 + 35413 23818 23870 23885 34769 34769 0.012100613149868877 QDVVKGLF 8 Unmodified _QDVVKGLF_ 0 0 0 ENSG00000087269|ENST00000416614|NOP14;nc|ENSG00000087269|P78316-2|NOP14 ENSG00000087269|ENST00000416614|NOP14 ENSG00000087269|ENST00000416614|NOP14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7596130371094 2 453.258185 904.501818 0.38734 0.00017556 -0.16968 -7.6911E-05 0.21765 9.8654E-05 453.2580839923594 83.632 0.8093 83.632 83.398 84.208 0 30 22 2 0 0 0 0.56049 1 16359 16359 24.674 7.7316 1 1190400 35414 1713 23871 23886 34770 34770 0.04574686385808491 QDWDGQSPATV 11 Unmodified _QDWDGQSPATV_ 0 0 0 ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.28662109375 2 602.267467 1202.52038 NaN NaN NaN NaN NaN NaN NaN 130.49 1 125.72 125.22 126.22 -4.7725 0 0 0 0.22632 1 25114 25114 0.026206 0 1 35415 7184 23872 23887 34771 34771 -0.07277848500962136 QDWDRGPENGA 11 Unmodified _QDWDRGPENGA_ 0 0 0 ENST00000487544.1_1_X:43703754-43741674:-|nuORF ENST00000487544.1_1_X:43703754-43741674:-|nuORF ENST00000487544.1_1_X:43703754-43741674:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7666015625 2 622.768165 1243.52178 NaN NaN NaN NaN NaN NaN NaN 127.71 0.99999 123.09 122.59 123.59 -4.6172 0 0 0 0.1931 1 25182 25182 20.415 1.0526 1 35416 10470 23873 23888 34772 34772 -0.09024214412170295 QDYDEDWQY 9 Unmodified _QDYDEDWQY_ 0 0 0 REV__ENSG00000127083|ENST00000375550|OMD REV__ENSG00000127083|ENST00000375550|OMD MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7628784179688 2 631.235832 1260.45711 0.35795 0.00022595 0.60828 0.00038397 0.96623 0.00060992 631.2362807031975 72.527 0.82697 72.527 72.023 72.85 0 40 23 2 0 0 0 0.46882 1 14028 14028 11.64 4.0313 1 4684300 + 35417 15877 23874 23889 34773 34773 -0.16269834008858197 QDYDEDWQY 9 Unmodified _QDYDEDWQY_ 0 0 0 REV__ENSG00000127083|ENST00000375550|OMD REV__ENSG00000127083|ENST00000375550|OMD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.75439453125 2 631.235832 1260.45711 0.40442 0.00025529 0.27214 0.00017179 0.67657 0.00042707 631.2357474049696 76.612 0.80632 72.978 72.477 73.283 -3.6337 48 22 3 0 0 0 0.81703 1 14571 14571 14.838 7.2293 1 7089700 + 35418 15877 23874 23889 34774 34774 -0.16269834008858197 QDYDEDWQY 9 Unmodified _QDYDEDWQY_ 0 0 0 REV__ENSG00000127083|ENST00000375550|OMD REV__ENSG00000127083|ENST00000375550|OMD MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 631.235832 1260.45711 0.35795 0.00022595 0.60828 0.00038397 0.96623 0.00060992 631.2362807031975 72.527 0.82697 72.527 72.023 72.85 0 -0.25716 0.00056072 NaN 11.64 40 23 2 NaN NaN NaN NaN 0 NaN NaN 0 4684300 + 35419 15877 23874 23889 -0.16269834008858197 QDYTPSYGL 9 Unmodified _QDYTPSYGL_ 0 0 0 ENSG00000132464|ENST00000396073|ENAM;ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant;ENAM|p.A899T|1|0.31|ENSG00000132464|chr4:70644121-70644121|G/A|missense_variant ENSG00000132464|ENST00000396073|ENAM ENSG00000132464|ENST00000396073|ENAM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2601928710938 2 522.237647 1042.46074 0.51118 0.00026696 -0.60418 -0.00031553 -0.093003 -4.857E-05 522.2366599243314 104.55 0.34403 104.55 104.31 104.65 0 11 9 2 0 0 0 0.80521 1 20553 20553 6.7232 0 1 738170 35420 3729 23875 23890 34775 34775 -0.05879119444330172 QDYWIAKY 8 Unmodified _QDYWIAKY_ 0 0 0 REV__ENSG00000130643|ENST00000252939|CALY REV__ENSG00000130643|ENST00000252939|CALY MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7931518554688 2 543.766374 1085.5182 NaN NaN NaN NaN NaN NaN NaN 130.02 1 125.38 124.88 125.88 -4.6359 0 0 0 0.21039 1 25623 25623 16.942 2.104 1 + 35421 16022 23876 23891 34776 34776 -0.021142324480933894 QDYYSGGY 8 Unmodified _QDYYSGGY_ 0 0 0 PRCC|p.K454Nfs*18|1|0.38|ENSG00000143294|chr1:156797312-156797312|A/-|frameshift_variant;ENSG00000143294|ENST00000271526|PRCC PRCC|p.K454Nfs*18|1|0.38|ENSG00000143294|chr1:156797312-156797312|A/-|frameshift_variant PRCC|p.K454Nfs*18|1|0.38|ENSG00000143294|chr1:156797312-156797312|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72076416015625 2 476.68779 951.361027 0.33324 0.00015885 1.5052 0.0007175 1.8384 0.00087636 476.69106218672 146.96 0.91104 141.96 141.67 142.59 -5 103 25 6 0 0 0 0.64227 1 28402 28402 19.439 0.18201 1 13043000 35422 4469 23877 23892 34777 34777 -0.11659937058277592 QEAAAILMA 9 Unmodified _QEAAAILMA_ 0 0 0 nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2404479980469 2 459.241678 916.468803 0.3296 0.00015137 0.086926 3.992E-05 0.41653 0.00019129 459.2416175481984 117.44 0.55036 112.83 112.51 113.06 -4.6106 24 15 3 0 0 0 0.44932 1 22502 22502 22.736 6.8891 1 1531500 35423 2026 23878 23893 34778 34778 0.007227362714388619 QEAAAILMA 9 Unmodified _QEAAAILMA_ 0 0 0 nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 459.241678 916.468803 0.2254 0.00010351 1.4105 0.00064777 1.6359 0.00075128 459.2424659107361 112.73 0.2009 112.73 112.6 112.8 0 -0.031282 0.0010216 NaN 22.736 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 608140 35424 2026 23878 23893 0.007227362714388619 QEAAAILMA 9 Unmodified _QEAAAILMA_ 0 0 0 nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.241678 916.468803 0.056664 2.6022E-05 0.35455 0.00016283 0.41122 0.00018885 459.24193350362293 117.23 0.59037 112.74 112.42 113.01 -4.486 -0.014773 5.1701E-05 NaN 22.736 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1839100 35425 2026 23878 23893 0.007227362714388619 QEAAAILMA 9 Unmodified _QEAAAILMA_ 0 0 0 nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.241678 916.468803 0.45932 0.00021094 -0.01034 -4.7486E-06 0.44898 0.00020619 459.24177902491516 117.09 0.39211 112.73 112.58 112.98 -4.3585 -0.027582 -0.00028345 NaN 22.736 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 760950 35426 2026 23878 23893 0.007227362714388619 QEAAAVLMA 9 Oxidation (M) _QEAAAVLM(Oxidation (M))A_ QEAAAVLM(1)A QEAAAVLM(110)A 0 0 1 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2318115234375 2 460.23131 918.448068 -0.15899 -7.3173E-05 0.47144 0.00021697 0.31245 0.0001438 460.2314550019181 68.807 0.91188 65.628 65.241 66.153 -3.1796 43 25 2 0 0 0 0.006766 6 13401 13308;13355;13360;13401;13427;13472 111.29 52.608 1 3324500 35427 2056 23879 23894 34779;34780;34781;34782;34783;34784 34782 22 -0.014418541082136471 QEAAAVLMA 9 Oxidation (M) _QEAAAVLM(Oxidation (M))A_ QEAAAVLM(1)A QEAAAVLM(110)A 0 0 1 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2313537597656 2 460.23131 918.448068 0.31144 0.00014334 -0.13763 -6.3341E-05 0.17381 7.9994E-05 460.23114774743686 69.496 0.92542 65.96 65.361 66.286 -3.5362 38 25 2 0 0 0 0.006766 5 13095 12979;13001;13064;13095;13118 111.29 61.354 1 2634900 35428 2056 23879 23894 34785;34786;34787;34788;34789 34788 22 -0.014418541082136471 QEAAAVLMA 9 Oxidation (M) _QEAAAVLM(Oxidation (M))A_ QEAAAVLM(1)A QEAAAVLM(110)A 0 0 1 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2390441894531 2 460.23131 918.448068 0.33365 0.00015356 -0.1146 -5.2744E-05 0.21905 0.00010081 460.2311679698973 69.196 1.0752 65.806 65.218 66.294 -3.3903 48 30 2 0 0 0 0.006766 4 13043 13043;13081;13131;13176 111.29 49.866 1 2398200 35429 2056 23879 23894 34790;34791;34792;34793 34790 22 -0.014418541082136471 QEAAFYARYRV 11 Unmodified _QEAAFYARYRV_ 0 0 0 nc|ENSG00000183260|Q9H3Z7|ABHD16B nc|ENSG00000183260|Q9H3Z7|ABHD16B nc|ENSG00000183260|Q9H3Z7|ABHD16B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23809814453125 3 458.570204 1372.68878 0.018065 8.2843E-06 -0.81168 -0.00037221 -0.79362 -0.00036393 458.5698247444804 56.543 0.52803 53.354 53.09 53.618 -3.1895 38 14 3 0 0 0 0.74408 1 10433 10433 8.7518 1.2747 1 9021900 35430 12504 23880 23895 34794 34794 0.0173467820334281 QEAALLCAP 9 Unmodified _QEAALLCAP_ 0 0 0 REV__ENST00000414722.5_1_10:119806017-119811679:+|nuORF REV__ENST00000414722.5_1_10:119806017-119811679:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2330017089844 2 458.233853 914.453153 NaN NaN NaN NaN NaN NaN NaN 32.842 1 30.696 30.196 31.196 -2.1468 0 0 0 0.13613 1 5712 5712 32.305 7.6316 1 + 35431 21448 23881 23896 34795 34795 -0.0074955024559812955 QEAATNWHS 9 Unmodified _QEAATNWHS_ 0 0 0 ATP6V0A4|p.A290T|1|0.4|ENSG00000105929|chr7:138752786-138752786|C/T|missense_variant ATP6V0A4|p.A290T|1|0.4|ENSG00000105929|chr7:138752786-138752786|C/T|missense_variant ATP6V0A4|p.A290T|1|0.4|ENSG00000105929|chr7:138752786-138752786|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2791137695312 2 522.230687 1042.44682 NaN NaN NaN NaN NaN NaN NaN 38.53 1 35.981 35.481 36.481 -2.5491 0 0 0 0.18705 1 7145 7145 25.399 1.3787 1 35432 273 23882 23897 34796 34796 -0.07270352152795567 QEADGEEDEGT 11 Unmodified _QEADGEEDEGT_ 0 0 0 PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant;ENST00000502489.5_1_5:31983264-32077762:+|nuORF;PDZD2|p.Q1108Sfs*17|1|0.35|ENSG00000133401|chr5:32074423-32074423|C/-|frameshift_variant;PDZD2|p.G594Afs*45|1|0.09|ENSG00000133401|chr5:32052720-32052720|A/-|frameshift_variant PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.27001953125 2 590.217837 1178.42112 0.62102 0.00036654 3.0493 0.0017997 3.6703 0.0021663 590.2200716773532 105.42 0.45583 105.42 105.04 105.49 0 14 12 2 0 0 0 0.87678 1 20725 20725 0.0059557 0 1 1462800 35433 3801 23883 23898 34797 34797 -0.16095335976365277 QEAEAWLN 8 Unmodified _QEAEAWLN_ 0 0 0 nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-4|OAS1 nc|ENSG00000089127|P00973-4|OAS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.249267578125 2 480.724707 959.43486 0.052867 2.5414E-05 0.013418 6.4504E-06 0.066285 3.1865E-05 480.72468045254624 80.782 0.83813 77.225 76.851 77.689 -3.557 61 23 3 0 0 0 0.17924 1 15744 15744 47.749 5.9091 1 7215300 35434 1751 23884 23899 34798 34798 -0.04647968895972099 QEAEAWLN 8 Unmodified _QEAEAWLN_ 0 0 0 nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-4|OAS1 nc|ENSG00000089127|P00973-4|OAS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2523498535156 2 480.724707 959.43486 0.025168 1.2099E-05 -0.074145 -3.5643E-05 -0.048977 -2.3545E-05 480.7246548762524 81.015 0.84358 77.176 76.801 77.644 -3.8392 60 23 3 0 0 0 0.15802 1 15431 15431 51.63 5.6089 1 5146000 35435 1751 23884 23899 34799 34799 -0.04647968895972099 QEAEAWLN 8 Unmodified _QEAEAWLN_ 0 0 0 nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-4|OAS1 nc|ENSG00000089127|P00973-4|OAS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2539978027344 2 480.724707 959.43486 -0.25866 -0.00012435 0.33458 0.00016084 0.075912 3.6493E-05 480.72478887075135 80.847 0.94291 77.159 76.753 77.696 -3.6879 64 26 3 0 0 0 0.49353 1 15464 15464 45.7 25.246 1 6815600 35436 1751 23884 23899 34800 34800 -0.04647968895972099 QEAEDPDC 8 Unmodified _QEAEDPDC_ 0 0 0 ENST00000237536.8_2_20:35406325-35406529:-|nuORF ENST00000237536.8_2_20:35406325-35406529:-|nuORF ENST00000237536.8_2_20:35406325-35406529:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 454.7460021972656 2 453.660915 905.307277 -0.0042471 -1.9267E-06 -1.1757 -0.00053337 -1.18 -0.0005353 453.6631003387015 38.691 0.73693 36.249 35.912 36.649 -2.4419 78 20 6 0 0 0 8448 1 6921 6921 3.2813 3.273 1 2652300 35437 8170 23885 23900 34801 34801 -0.14916477552310425 QEAEKLGPPP 10 Unmodified _QEAEKLGPPP_ 0 0 0 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2823486328125 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 45.267 1 42.401 41.901 42.901 -2.8666 0 0 0 0.16651 1 8212 8212 34.402 11.253 1 35438 1553 23886 23901 34802 34802 0.020531352350417365 QEAEPLKQV 9 Unmodified _QEAEPLKQV_ 0 0 0 nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1 nc|ENSG00000148337|Q9ULV3-5|CIZ1 nc|ENSG00000148337|Q9ULV3-5|CIZ1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2749633789062 2 521.282389 1040.55022 -0.32379 -0.00016879 -0.7455 -0.00038861 -1.0693 -0.0005574 521.2819605418938 48.703 0.65748 45.834 45.487 46.144 -2.869 47 18 3 0 0 0 0.13708 1 9193 9193 46.021 26.764 1 11568000 35439 563 23887 23902 34803 34803 0.031571352350511006 QEAEPPLTA 9 Unmodified _QEAEPPLTA_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant;TRIM33|p.Q382Tfs*20|1|0.12|ENSG00000197323|chr1:114430809-114430810|-/T|frameshift_variant nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7415771484375 2 478.24019 954.465826 -0.30093 -0.00014392 -2.0738 -0.00099178 -2.3747 -0.0011357 478.2402610439546 57.202 1.0433 57.202 56.536 57.58 0 48 29 2 0 0 0 0.061113 4 10980 10846;10896;10937;10980 72.968 47.569 1 3565000 35440 7354 23888 23903 34804;34805;34806;34807 34807 -0.013228155817159859 QEAEPPLTA 9 Unmodified _QEAEPPLTA_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant;TRIM33|p.Q382Tfs*20|1|0.12|ENSG00000197323|chr1:114430809-114430810|-/T|frameshift_variant nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7417907714844 2 478.24019 954.465826 -0.0065267 -3.1213E-06 -0.18724 -8.9544E-05 -0.19376 -9.2665E-05 478.240096886639 60.258 0.75808 57.325 56.923 57.681 -2.9333 38 21 2 0 0 0 0.050063 3 11611 11564;11611;11656 76.825 32.966 1 4899300 35441 7354 23888 23903 34808;34809;34810 34809 -0.013228155817159859 QEAEPPLTA 9 Unmodified _QEAEPPLTA_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant;TRIM33|p.Q382Tfs*20|1|0.12|ENSG00000197323|chr1:114430809-114430810|-/T|frameshift_variant nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7417907714844 2 478.24019 954.465826 0.16569 7.9238E-05 -0.32563 -0.00015573 -0.15994 -7.6491E-05 478.2400364135623 60.53 0.70793 57.306 56.889 57.597 -3.2237 32 19 2 0 0 0 0.040189 2 11316 11316;11359 82.529 59.793 1 3732600 35442 7354 23888 23903 34811;34812 34811 -0.013228155817159859 QEAEPWAV 8 Unmodified _QEAEPWAV_ 0 0 0 ENST00000502859.1_1_1:50307995-50310583:+|nuORF ENST00000502859.1_1_1:50307995-50310583:+|nuORF ENST00000502859.1_1_1:50307995-50310583:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2572326660156 2 465.2218 928.429047 NaN NaN NaN NaN NaN NaN NaN 57.038 1 54.144 53.644 54.644 -2.8944 0 0 0 0.21039 1 10943 10943 16.942 0 1 35443 10634 23889 23904 34813 34813 -0.03803067407625349 QEAEQDRLGKG 11 Unmodified _QEAEQDRLGKG_ 0 0 0 REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 615.7865600585938 2 615.807291 1229.60003 1.2259 0.00075491 -0.67455 -0.00041539 0.55133 0.00033951 615.8068960225437 174.2 0.36798 169.41 169.18 169.54 -4.7898 21 10 3 0 0 0 0.43921 1 35576 35576 26.268 7.0112 1 18069000 + 35444 14899 23890 23905 34814 34814 -0.005587818269759737 QEAEQDRLGKG 11 Unmodified _QEAEQDRLGKG_ 0 0 0 REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 615.807291 1229.60003 1.2259 0.00075491 -0.67455 -0.00041539 0.55133 0.00033951 615.8068960225437 174.2 0.36798 169.41 169.18 169.54 -4.7898 0.020969 -0.00043641 NaN 26.268 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 18069000 + 35445 14899 23890 23905 -0.005587818269759737 QEAEQDRLGKG 11 Unmodified _QEAEQDRLGKG_ 0 0 0 REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 615.807291 1229.60003 0.46627 0.00028713 0.088463 5.4476E-05 0.55473 0.00034161 615.807478813056 174.27 0.31364 169.38 169.23 169.55 -4.8845 -0.0053183 0.00050333 NaN 26.268 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 16354000 + 35446 14899 23890 23905 -0.005587818269759737 QEAEQDRLGKG 11 Unmodified _QEAEQDRLGKG_ 0 0 0 REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant REV__RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 615.807291 1229.60003 0.6782 0.00041764 -0.22733 -0.00013999 0.45087 0.00027765 615.8071374592864 174.26 0.2794 169.37 169.14 169.42 -4.8916 -0.01565 0.00011439 NaN 26.268 14 7 2 NaN NaN NaN NaN 0 NaN NaN 0 14034000 + 35447 14899 23890 23905 -0.005587818269759737 QEAERILLRTQ 11 Unmodified _QEAERILLRTQ_ 0 0 0 nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1 nc|ENSG00000134283|Q8NEY8|PPHLN1 nc|ENSG00000134283|Q8NEY8|PPHLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.750244140625 3 452.924647 1355.75211 0.14611 6.6177E-05 -0.049895 -2.2599E-05 0.096215 4.3578E-05 452.92458334639986 95.928 0.72643 95.928 95.558 96.285 0 53 20 3 0 0 0 0.7486 1 18733 18733 4.6037 0.48712 1 8104700 35448 12334 23891 23906 34815 34815 0.08846618920597393 QEAETLIQI 9 Unmodified _QEAETLIQI_ 0 0 0 ENST00000523303.5_1_8:28625665-28628621:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;nc|ENSG00000104299|Q9NV88-2|INTS9;ENSG00000104299|ENST00000521022|INTS9 ENST00000523303.5_1_8:28625665-28628621:-|nuORF ENST00000523303.5_1_8:28625665-28628621:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2611083984375 2 522.782222 1043.54989 0.52706 0.00027554 -1.1077 -0.00057911 -0.58069 -0.00030357 522.7818164670632 46.19 0.48569 46.19 45.968 46.453 0 14 13 2 0 0 0 0.71527 1 8652 8652 25.399 7.2643 1 508160 35449 2225 23892 23907 34816 34816 0.029857155152058112 QEALKKQEA 9 Unmodified _QEALKKQEA_ 0 0 0 nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128;CEP128|p.I749Ffs*9|1|0.42|ENSG00000100629|chr14:80778013-80778013|T/-|frameshift_variant;nc|ENSG00000100629|Q6ZU80-3|CEP128;CEP128|p.K414Nfs*34|2|0.18|ENSG00000100629|chr14:80793078-80793078|T/-|frameshift_variant nc|ENSG00000100629|Q6ZU80-1|CEP128 nc|ENSG00000100629|Q6ZU80-1|CEP128 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.281005859375 2 522.787838 1043.56112 -0.5558 -0.00029057 0.69787 0.00036484 0.14206 7.4269E-05 522.7882161412699 60.452 0.63375 57.138 56.764 57.398 -3.3139 39 17 3 0 0 0 0.10047 1 11243 11243 62.573 10.943 1 3917800 35450 1999 23893 23908 34817 34817 0.04108537609317864 QEALKKQEA 9 Unmodified _QEALKKQEA_ 0 0 0 nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128;CEP128|p.I749Ffs*9|1|0.42|ENSG00000100629|chr14:80778013-80778013|T/-|frameshift_variant;nc|ENSG00000100629|Q6ZU80-3|CEP128;CEP128|p.K414Nfs*34|2|0.18|ENSG00000100629|chr14:80793078-80793078|T/-|frameshift_variant nc|ENSG00000100629|Q6ZU80-1|CEP128 nc|ENSG00000100629|Q6ZU80-1|CEP128 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.688232421875 2 522.787838 1043.56112 0.20209 0.00010565 -0.0079756 -4.1696E-06 0.19411 0.00010148 522.7878301233394 60.32 0.53402 57.096 56.852 57.386 -3.2237 35 14 3 0 0 0 0.25183 1 11282 11282 34.402 13.987 1 3731600 35451 1999 23893 23908 34818 34818 0.04108537609317864 QEAMAKKN 8 Unmodified _QEAMAKKN_ 0 0 0 REV__ENST00000340434.4_1_9:72365698-72365776:-|nuORF REV__ENST00000340434.4_1_9:72365698-72365776:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2397155761719 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 35.532 1 33.279 32.779 33.779 -2.2527 0 0 0 0.21292 1 6262 6262 14.838 1.3304 1 + 35452 20705 23894 23909 34819 34819 -0.0031903201407885717 QEAMAQLE 8 Unmodified _QEAMAQLE_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2394104003906 2 460.213117 918.411682 0.24982 0.00011497 3.6451 0.0016775 3.895 0.0017925 460.2149407965924 67.507 0.10435 64.01 63.924 64.028 -3.4965 4 2 2 0 0 0 0.59076 1 12665 12665 22.736 3.2973 1 579030 + 35453 19227 23895 23910 34820 34820 -0.050787310049372536 QEAPELNR 8 Unmodified _QEAPELNR_ 0 0 0 nc|ENSG00000169181|Q6UXU4-2|GSG1L;nc|ENSG00000169181|Q6UXU4-4|GSG1L;nc|ENSG00000169181|Q6UXU4-3|GSG1L;ENSG00000169181|ENST00000447459|GSG1L nc|ENSG00000169181|Q6UXU4-2|GSG1L nc|ENSG00000169181|Q6UXU4-2|GSG1L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7417297363281 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 60.585 1 57.271 56.771 57.771 -3.3139 0 0 0 0.19513 1 11284 11284 26.268 4.5215 1 35454 5967 23896 23911 34821 34821 -0.007208776303286868 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24017333984375 2 465.239993 928.465432 0.12907 6.0049E-05 0.16383 7.6219E-05 0.2929 0.00013627 465.23995691058656 33.488 2.737 33.488 32.188 34.925 0 197 78 3 0 0 0 7.7918E-08 13 6000 5910;5957;6000;6048;6089;6096;6152;6201;6216;6223;6243;6291;6341 149.99 0 1 7519200 35455 1278 23897 23912 34822;34823;34824;34825;34826;34827;34828;34829;34830;34831;34832;34833;34834 34824 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2398986816406 2 465.239993 928.465432 -0.45654 -0.0002124 0.50346 0.00023423 0.04692 2.1829E-05 465.24017317738793 36.284 3.3587 33.89 32.599 35.957 -2.3938 214 95 3 0 0 0 7.7918E-08 9 6599 6548;6599;6644;6686;6727;6753;6772;6816;6865 149.99 0 1 8545700 35456 1278 23897 23912 34835;34836;34837;34838;34839;34840;34841;34842;34843 34836 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2487487792969 2 465.239993 928.465432 -0.31821 -0.00014804 -1.469 -0.00068345 -1.7872 -0.00083149 465.2392198501525 39.962 0.7441 37.413 37.071 37.815 -2.5491 40 20 3 0 0 0 0.44856 1 7471 7471 4.7159 1.1289 1 1547400 35457 1278 23897 23912 34844 34844 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23944091796875 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 37.425 1 34.956 34.456 35.456 -2.4688 0 0 0 3.8604E-91 1 6911 6911 181.33 0 1 35458 1278 23897 23912 34845 34845 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23870849609375 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 37.648 1 35.179 34.679 35.679 -2.4688 0 0 0 2.1781E-18 1 6957 6957 126.57 0 1 35459 1278 23897 23912 34846 34846 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2396240234375 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 38.112 1 35.643 35.143 36.143 -2.4688 0 0 0 0.01645 1 7053 7053 69.105 0 1 35460 1278 23897 23912 34847 34847 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2394714355469 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 38.567 1 36.018 35.518 36.518 -2.5491 0 0 0 0.034601 1 7152 7152 60.074 0 1 35461 1278 23897 23912 34848 34848 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2529602050781 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 38.792 1 36.243 35.743 36.743 -2.5491 0 0 0 0.177 1 7202 7202 10.899 0 1 35462 1278 23897 23912 34849 34849 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2398376464844 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 38.801 1 36.252 35.752 36.752 -2.5491 0 0 0 0.03222 1 7203 7203 61.357 0 1 35463 1278 23897 23912 34850 34850 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2398681640625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 39.028 1 36.479 35.979 36.979 -2.5491 0 0 0 0.0034007 1 7247 7247 74.929 0 1 35464 1278 23897 23912 34851 34851 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2490234375 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 39.042 1 36.493 35.993 36.993 -2.5491 0 0 0 0.177 1 7250 7250 10.899 0 1 35465 1278 23897 23912 34852 34852 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2396545410156 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 39.262 1 36.713 36.213 37.213 -2.5491 0 0 0 0.070386 1 7294 7294 43.858 0 1 35466 1278 23897 23912 34853 34853 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2569274902344 2 465.239993 928.465432 0.092265 4.2925E-05 0.12256 5.7019E-05 0.21482 9.9944E-05 465.23992737871123 36.223 2.1405 33.875 32.613 34.754 -2.3479 166 61 3 0 0 0 7.7918E-08 10 6311 6192;6237;6280;6311;6330;6374;6421;6457;6497;6544 149.99 0 1 6895100 35467 1278 23897 23912 34854;34855;34856;34857;34858;34859;34860;34861;34862;34863 34857 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2398376464844 2 465.239993 928.465432 0.039287 1.8278E-05 -0.50646 -0.00023562 -0.46717 -0.00021735 465.2391344084747 37.615 2.581 35.267 34.72 37.301 -2.3479 123 73 3 0 0 0 9.2522E-06 6 6592 6592;6637;6735;6882;6937;7037 139.14 0 1 3900200 35468 1278 23897 23912 34864;34865;34866;34867;34868;34869 34864 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2474060058594 2 465.239993 928.465432 -0.034063 -1.5847E-05 -1.9967 -0.00092893 -2.0307 -0.00094478 465.23890366128404 39.947 0.81253 37.407 36.897 37.71 -2.5398 36 22 2 0 0 0 0.46598 1 7173 7173 2.6312 0 1 1437100 35469 1278 23897 23912 34870 34870 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2398986816406 2 465.239993 928.465432 0.26968 0.00012546 -0.38044 -0.000177 -0.11077 -5.1533E-05 465.2395926826212 36.067 5.1361 33.79 32.726 37.862 -2.2766 248 146 3 0 0 0 7.7918E-08 17 6268 6176;6218;6268;6319;6340;6368;6417;6457;6463;6511;6551;6594;6637;6681;6728;6828;6923 149.99 0 1 7106700 35470 1278 23897 23912 34871;34872;34873;34874;34875;34876;34877;34878;34879;34880;34881;34882;34883;34884;34885;34886;34887 34873 -0.0016619051091311121 QEAPPPPPP 9 Unmodified _QEAPPPPPP_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2403869628906 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 34.053 1 31.838 31.338 32.338 -2.2158 0 0 0 0.13613 1 5954 5954 32.305 0 1 35471 1278 23897 23912 34888 34888 -0.0016619051091311121 QEAPTLLAS 9 Unmodified _QEAPTLLAS_ 0 0 0 REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2503662109375 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 37.079 1 34.731 34.231 35.231 -2.3479 0 0 0 0.19721 1 6567 6567 24.021 3.5669 1 + 35472 13085 23898 23913 34889 34889 0.019457747979686246 QEARFSPA 8 Unmodified _QEARFSPA_ 0 0 0 ENST00000575312.1_1_17:79669519-79669810:-|nuORF ENST00000575312.1_1_17:79669519-79669810:-|nuORF ENST00000575312.1_1_17:79669519-79669810:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7538146972656 2 453.227417 904.44028 0.31227 0.00014153 0.45586 0.00020661 0.76813 0.00034814 453.2277312288632 26.147 0.61598 26.147 25.843 26.459 0 25 17 2 0 0 0 0.66265 1 4588 4588 18.135 2.2878 1 1667500 35473 11454 23899 23914 34890 34890 -0.01576245313481195 QEARFSPA 8 Unmodified _QEARFSPA_ 0 0 0 ENST00000575312.1_1_17:79669519-79669810:-|nuORF ENST00000575312.1_1_17:79669519-79669810:-|nuORF ENST00000575312.1_1_17:79669519-79669810:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 453.227417 904.44028 0.31227 0.00014153 0.45586 0.00020661 0.76813 0.00034814 453.2277312288632 26.147 0.61598 26.147 25.843 26.459 0 0 0 NaN 18.135 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1667500 35474 11454 23899 23914 -0.01576245313481195 QEARPCVI 8 Unmodified _QEARPCVI_ 0 0 0 ENST00000470861.1_1_9:139571827-139581809:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2 ENST00000470861.1_1_9:139571827-139581809:-|nuORF ENST00000470861.1_1_9:139571827-139581809:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23876953125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 42.711 1 42.711 42.211 43.211 0 0 0 0 0.20896 1 7993 7993 18.135 0 1 35475 6000 23900 23915 34891 34891 0.003732718485366604 QEARPCVI 8 Unmodified _QEARPCVI_ 0 0 0 ENST00000470861.1_1_9:139571827-139581809:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2 ENST00000470861.1_1_9:139571827-139581809:-|nuORF ENST00000470861.1_1_9:139571827-139581809:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2382507324219 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 54.416 1 54.416 53.916 54.916 0 0 0 0 0.20896 1 10377 10377 18.135 0 1 35476 6000 23900 23915 34892 34892 0.003732718485366604 QEARPCVI 8 Unmodified _QEARPCVI_ 0 0 0 ENST00000470861.1_1_9:139571827-139581809:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2 ENST00000470861.1_1_9:139571827-139581809:-|nuORF ENST00000470861.1_1_9:139571827-139581809:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23858642578125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 54.641 1 54.641 54.141 55.141 0 0 0 0 0.21486 1 10422 10422 12.532 0 1 35477 6000 23900 23915 34893 34893 0.003732718485366604 QEARPCVI 8 Unmodified _QEARPCVI_ 0 0 0 ENST00000470861.1_1_9:139571827-139581809:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2 ENST00000470861.1_1_9:139571827-139581809:-|nuORF ENST00000470861.1_1_9:139571827-139581809:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23883056640625 2 458.23947 914.464386 -0.20427 -9.3602E-05 0.23891 0.00010948 0.034641 1.5874E-05 458.239289981689 57.586 0.94844 54.691 54.27 55.219 -2.8944 47 26 3 0 0 0 0.56049 2 11025 11025;11060 24.674 0 1 1166400 35478 6000 23900 23915 34894;34895 34894 0.003732718485366604 QEARPCVI 8 Unmodified _QEARPCVI_ 0 0 0 ENST00000470861.1_1_9:139571827-139581809:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2 ENST00000470861.1_1_9:139571827-139581809:-|nuORF ENST00000470861.1_1_9:139571827-139581809:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2388916015625 2 458.23947 914.464386 0.024247 1.1111E-05 -0.42062 -0.00019275 -0.39638 -0.00018164 458.239188393989 57.937 1.0569 54.685 54.009 55.066 -3.2517 34 29 2 0 0 0 0.56049 1 10716 10716 24.674 0 1 737860 35479 6000 23900 23915 34896 34896 0.003732718485366604 QEARPCVI 8 Unmodified _QEARPCVI_ 0 0 0 ENST00000470861.1_1_9:139571827-139581809:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2 ENST00000470861.1_1_9:139571827-139581809:-|nuORF ENST00000470861.1_1_9:139571827-139581809:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2391662597656 2 458.23947 914.464386 0.066389 3.0422E-05 0.30024 0.00013758 0.36663 0.000168 458.2393160896592 57.993 0.80505 54.788 54.29 55.095 -3.2052 37 22 3 0 0 0 0.40661 2 10804 10757;10804 32.117 7.4431 1 951950 35480 6000 23900 23915 34897;34898 34898 0.003732718485366604 QEASAVLREF 10 Unmodified _QEASAVLREF_ 0 0 0 REV__ENST00000526250.5_1_11:66259118-66263112:+|nuORF REV__ENST00000526250.5_1_11:66259118-66263112:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3348999023438 2 575.29857 1148.58259 0.21026 0.00012096 -0.28676 -0.00016498 -0.076506 -4.4014E-05 575.2984042893215 61.992 0.8437 58.622 58.288 59.131 -3.3694 79 23 5 0 0 0 0.36078 1 11596 11596 33.445 0.65921 1 70552000 + 35481 19850 23901 23916 34899 34899 0.014239226380368564 QEASAVLREF 10 Unmodified _QEASAVLREF_ 0 0 0 REV__ENST00000526250.5_1_11:66259118-66263112:+|nuORF REV__ENST00000526250.5_1_11:66259118-66263112:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 575.29857 1148.58259 0.21026 0.00012096 -0.28676 -0.00016498 -0.076506 -4.4014E-05 575.2984042893215 61.992 0.8437 58.622 58.288 59.131 -3.3694 -0.0074606 -0.00015707 NaN 33.445 79 23 5 NaN NaN NaN NaN 0 NaN NaN 0 70552000 + 35482 19850 23901 23916 0.014239226380368564 QEASAVLREF 10 Unmodified _QEASAVLREF_ 0 0 0 REV__ENST00000526250.5_1_11:66259118-66263112:+|nuORF REV__ENST00000526250.5_1_11:66259118-66263112:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.29857 1148.58259 0.21151 0.00012168 -0.21557 -0.00012402 -0.0040645 -2.3383E-06 575.2984096780143 61.905 1.04 58.666 58.24 59.28 -3.2395 0.035853 -7.5159E-05 NaN 33.445 97 29 5 NaN NaN NaN NaN 0 NaN NaN 0 91648000 + 35483 19850 23901 23916 0.014239226380368564 QEASLPSSP 9 Unmodified _QEASLPSSP_ 0 0 0 REV__UNG|p.E105Gfs*38|1|0.41|ENSG00000076248|chr12:109098608-109098609|-/G|frameshift_variant REV__UNG|p.E105Gfs*38|1|0.41|ENSG00000076248|chr12:109098608-109098609|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2250061035156 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 56.244 1 53.055 52.555 53.555 -3.1895 0 0 0 0.19721 1 10419 10419 24.021 1.2843 1 + 35484 14347 23902 23917 34900 34900 -0.026113886158100286 QEASLRFTL 9 Unmodified _QEASLRFTL_ 0 0 0 ENST00000591292.5_1_16:4851502-4851742:-|nuORF ENST00000591292.5_1_16:4851502-4851742:-|nuORF ENST00000591292.5_1_16:4851502-4851742:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2675170898438 2 532.790381 1063.56621 0.2865 0.00015265 -0.48384 -0.00025779 -0.19734 -0.00010514 532.790193504725 136.97 0.97495 132.13 131.72 132.7 -4.84 92 27 4 0 0 0 0.13708 1 26307 26307 46.021 4.1813 1 49497000 35485 11617 23903 23918 34901 34901 0.036968414719467546 QEATALQAE 9 Unmodified _QEATALQAE_ 0 0 0 REV__nc|ENSG00000089847|Q8TF21-2|ANKRD24 REV__nc|ENSG00000089847|Q8TF21-2|ANKRD24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2370910644531 2 480.735271 959.45599 -0.30372 -0.00014601 0.58691 0.00028215 0.2832 0.00013614 480.7355404277563 35.577 0.63995 33.183 32.88 33.52 -2.3938 31 17 2 0 0 0 0.13832 1 6564 6564 7.4771 2.7611 1 2150600 + 35486 14537 23904 23919 34902 34902 -0.025360035871017317 QEATALQAE 9 Unmodified _QEATALQAE_ 0 0 0 REV__nc|ENSG00000089847|Q8TF21-2|ANKRD24 REV__nc|ENSG00000089847|Q8TF21-2|ANKRD24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2363586425781 2 480.735271 959.45599 0.17141 8.2402E-05 0.35848 0.00017233 0.52988 0.00025473 480.7354197998158 35.603 0.62193 33.35 33.019 33.641 -2.2527 29 17 2 0 0 0 0.13832 1 6246 6246 1.2148 0 1 1488200 + 35487 14537 23904 23919 34903 34903 -0.025360035871017317 QEATRLKA 8 Unmodified _QEATRLKA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2391357421875 2 458.764166 915.513779 0.50092 0.0002298 -0.046715 -2.1431E-05 0.4542 0.00020837 458.7640981067712 43.478 0.62518 43.478 43.155 43.78 0 36 17 3 0 0 0 0.93477 1 8088 8088 18.135 0 1 2932300 35488 6567 23905 23920 34904 34904 0.052643031289903774 QEATVAPAE 9 Unmodified _QEATVAPAE_ 0 0 0 nc|ENSG00000291072|Q86T23|CROCCP2 nc|ENSG00000291072|Q86T23|CROCCP2 nc|ENSG00000291072|Q86T23|CROCCP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2333068847656 2 458.224539 914.434526 -0.010362 -4.7479E-06 -0.062834 -2.8792E-05 -0.073196 -3.354E-05 458.2244716194021 32.861 0.76582 30.63 30.331 31.096 -2.2305 33 21 2 0 0 0 0.11032 2 6014 6007;6014 52.268 6.5687 1 1958500 35489 12664 23906 23921 34905;34906 34906 -0.026113886158213973 QEAYFRYMA 9 Unmodified _QEAYFRYMA_ 0 0 0 ENST00000577978.1_1_17:61877821-61882415:+|nuORF;DDX42|p.I196Sfs*29|1|0.37|ENSG00000198231|chr17:63800576-63800576|A/-|frameshift_variant;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42 ENST00000577978.1_1_17:61877821-61882415:+|nuORF ENST00000577978.1_1_17:61877821-61882415:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.272705078125 2 589.768591 1177.52263 0.61303 0.00036155 -0.097524 -5.7516E-05 0.51551 0.00030403 589.7685126416095 105.53 0.70951 105.53 105.07 105.78 0 35 19 2 0 0 0 0.019708 1 20687 20687 92.653 45.059 1 6149200 35490 802 23907 23922 34907 34907 -0.05903091296841012 QEAYFRYMA 9 Unmodified _QEAYFRYMA_ 0 0 0 ENST00000577978.1_1_17:61877821-61882415:+|nuORF;DDX42|p.I196Sfs*29|1|0.37|ENSG00000198231|chr17:63800576-63800576|A/-|frameshift_variant;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42 ENST00000577978.1_1_17:61877821-61882415:+|nuORF ENST00000577978.1_1_17:61877821-61882415:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2703857421875 2 589.768591 1177.52263 0.06703 3.9532E-05 0.41187 0.00024291 0.4789 0.00028244 589.7687980679141 110.26 0.72643 105.88 105.52 106.24 -4.3776 45 20 3 0 0 0 5.8752E-07 3 21742 21693;21720;21742 142.08 78.119 1 6894000 35491 802 23907 23922 34908;34909;34910 34910 -0.05903091296841012 QEAYFRYMA 9 Unmodified _QEAYFRYMA_ 0 0 0 ENST00000577978.1_1_17:61877821-61882415:+|nuORF;DDX42|p.I196Sfs*29|1|0.37|ENSG00000198231|chr17:63800576-63800576|A/-|frameshift_variant;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42 ENST00000577978.1_1_17:61877821-61882415:+|nuORF ENST00000577978.1_1_17:61877821-61882415:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.270263671875 2 589.768591 1177.52263 0.2201 0.00012981 0.39138 0.00023082 0.61148 0.00036063 589.7688338029259 110.26 0.8401 105.76 105.27 106.11 -4.4915 57 23 3 0 0 0 4.7767E-11 2 21174 21125;21174 155.03 88.569 1 5679200 35492 802 23907 23922 34911;34912 34912 -0.05903091296841012 QEAYFRYMA 9 Unmodified _QEAYFRYMA_ 0 0 0 ENST00000577978.1_1_17:61877821-61882415:+|nuORF;DDX42|p.I196Sfs*29|1|0.37|ENSG00000198231|chr17:63800576-63800576|A/-|frameshift_variant;nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42 ENST00000577978.1_1_17:61877821-61882415:+|nuORF ENST00000577978.1_1_17:61877821-61882415:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2705078125 2 589.768591 1177.52263 0.65274 0.00038497 -0.014203 -8.3767E-06 0.63854 0.00037659 589.7687066027087 109.88 0.77226 105.7 105.3 106.07 -4.1826 52 21 3 0 0 0 5.8017E-05 3 21144 21122;21144;21191 129.77 68.17 1 4740700 35493 802 23907 23922 34913;34914;34915 34914 -0.05903091296841012 QEAYSRIQA 9 Unmodified _QEAYSRIQA_ 0 0 0 nc|ENSG00000167114|Q6P1M0-2|SLC27A4;ENSG00000167114|ENST00000300456|SLC27A4 nc|ENSG00000167114|Q6P1M0-2|SLC27A4 nc|ENSG00000167114|Q6P1M0-2|SLC27A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27001953125 2 533.269813 1064.52507 0.31345 0.00016715 -0.24552 -0.00013093 0.06793 3.6225E-05 533.26956849123 41.86 0.70728 39.209 38.829 39.537 -2.651 47 19 4 0 0 0 0.35556 2 7476 7476;7478 14.405 5.6103 1 7688900 35494 5788 23908 23923 34916;34917 34916 -0.004609195675357114 QEAYVDDTV 9 Unmodified _QEAYVDDTV_ 0 0 0 REV__QRICH1|p.M687V|1|0.28|ENSG00000198218|chr3:49032262-49032262|T/C|missense_variant REV__QRICH1|p.M687V|1|0.28|ENSG00000198218|chr3:49032262-49032262|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2611083984375 2 520.232561 1038.45057 0.52337 0.00027228 -0.80523 -0.00041891 -0.28186 -0.00014663 520.2320880581901 45.577 1.7738 45.577 44.99 46.764 0 195 50 6 0 0 0 0.55979 1 8652 8652 15.847 3.3156 1 129850000 + 35495 24537 23909 23924 34918 34918 -0.06711727169567894 QEAYVDDTV 9 Unmodified _QEAYVDDTV_ 0 0 0 REV__QRICH1|p.M687V|1|0.28|ENSG00000198218|chr3:49032262-49032262|T/C|missense_variant REV__QRICH1|p.M687V|1|0.28|ENSG00000198218|chr3:49032262-49032262|T/C|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 520.232561 1038.45057 -0.31455 -0.00016364 -0.25396 -0.00013212 -0.56851 -0.00029576 520.2324500551134 48.641 1.8549 45.772 45.236 47.091 -2.869 0.020209 0.00015112 NaN 15.847 199 52 6 NaN NaN NaN NaN 0 NaN NaN 0 259190000 + 35496 24537 23909 23924 -0.06711727169567894 QEAYVDDTV 9 Unmodified _QEAYVDDTV_ 0 0 0 REV__QRICH1|p.M687V|1|0.28|ENSG00000198218|chr3:49032262-49032262|T/C|missense_variant REV__QRICH1|p.M687V|1|0.28|ENSG00000198218|chr3:49032262-49032262|T/C|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 520.232561 1038.45057 -0.66962 -0.00034836 0.10027 5.2163E-05 -0.56936 -0.0002962 520.2325730413064 48.804 2.1771 45.805 45.159 47.337 -2.999 0.053667 0.00051968 NaN 15.847 220 62 6 NaN NaN NaN NaN 0 NaN NaN 0 192250000 + 35497 24537 23909 23924 -0.06711727169567894 QECAHQTTK 9 Unmodified _QECAHQTTK_ 0 0 0 ENST00000437022.5_1_22:30803127-30805128:+|nuORF;ENST00000452649.1_1_22:30793095-30805128:+|nuORF;ENST00000464335.5_1_22:30795691-30811950:+|nuORF;SEC14L2|p.G243Afs*3|1|0.24|ENSG00000100003|chr22:30415818-30415818|G/-|frameshift_variant;nc|ENSG00000100003|O76054-4|SEC14L2;ENSG00000100003|ENST00000615189|SEC14L2 ENST00000437022.5_1_22:30803127-30805128:+|nuORF ENST00000437022.5_1_22:30803127-30805128:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 349.0792236328125 3 349.162557 1044.46584 NaN NaN NaN NaN NaN NaN NaN 99.697 1 99.697 99.197 100.2 0 0 0 0 0.23508 1 19551 19551 0.96228 0.18574 1 35498 1918 23910 23925 34919 34919 -0.054611388533885474 QECLLRGP 8 Unmodified _QECLLRGP_ 0 0 0 REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2409362792969 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 62.196 1 58.827 58.327 59.327 -3.3694 0 0 0 0.21452 1 11606 11606 13.508 0.97634 1 + 35499 22401 23911 23926 34920 34920 0.003732718485366604 QEDDKNFLS 9 Unmodified _QEDDKNFLS_ 0 0 0 REV__TDRP|p.L60I|1|0.33|ENSG00000180190|chr8:494528-494528|G/T|missense_variant REV__TDRP|p.L60I|1|0.33|ENSG00000180190|chr8:494528-494528|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7836303710938 2 548.251286 1094.48802 0.41255 0.00022618 -0.24669 -0.00013525 0.16586 9.0935E-05 548.2513568328746 37.834 0.42485 37.834 37.577 38.001 0 19 11 2 0 0 0 0.71527 1 7029 7029 13.906 1.6654 1 2370900 + 35500 18678 23912 23927 34921 34921 -0.05544635903947892 QEDDRQLIA 9 Unmodified _QEDDRQLIA_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant;DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7882080078125 2 544.272552 1086.53055 0.6213 0.00033816 -0.48474 -0.00026383 0.13656 7.4325E-05 544.272424708905 44.648 0.63244 44.648 44.323 44.955 0 37 17 3 0 0 0 0.50308 1 8394 8394 31.268 8.5321 1 3725700 35501 807 23913 23928 34922 34922 -0.009252407757003311 QEDDRQLIA 9 Unmodified _QEDDRQLIA_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant;DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.787353515625 2 544.272552 1086.53055 0.15864 8.6343E-05 -0.31522 -0.00017156 -0.15658 -8.5221E-05 544.2723640034178 47.447 0.5578 44.578 44.251 44.809 -2.869 34 15 3 0 0 0 0.38759 1 9003 9003 22.736 10.496 1 3069600 35502 807 23913 23928 34923 34923 -0.009252407757003311 QEDDRQLIA 9 Unmodified _QEDDRQLIA_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant;DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7894287109375 2 544.272552 1086.53055 0.023563 1.2825E-05 -0.08382 -4.5621E-05 -0.060257 -3.2796E-05 544.2724830935076 47.526 0.94398 44.584 44.308 45.252 -2.9421 38 26 2 0 0 0 0.1428 1 8671 8671 36.127 19.014 1 2978200 35503 807 23913 23928 34924 34924 -0.009252407757003311 QEDDRQLIA 9 Unmodified _QEDDRQLIA_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant;DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7901611328125 2 544.272552 1086.53055 -0.0060059 -3.2688E-06 -0.32712 -0.00017805 -0.33313 -0.00018131 544.2723995242885 47.529 0.89559 44.579 44.295 45.19 -2.9499 44 25 3 0 0 0 0.45788 1 8659 8659 20.415 0 1 2602100 35504 807 23913 23928 34925 34925 -0.009252407757003311 QEDLGISLS 9 Unmodified _QEDLGISLS_ 0 0 0 nc|ENSG00000175779|Q8NAA6|LINC02694 nc|ENSG00000175779|Q8NAA6|LINC02694 nc|ENSG00000175779|Q8NAA6|LINC02694 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.246337890625 2 481.245472 960.476391 0.33107 0.00015933 -0.67529 -0.00032498 -0.34421 -0.00016565 481.24511053279184 67.672 0.45659 64.176 63.89 64.346 -3.4965 14 12 2 0 0 0 0.30618 1 12666 12666 31.268 2.1868 1 1053500 35505 12476 23914 23929 34926 34926 -0.005428329272717747 QEDLLFSFVF 10 Unmodified _QEDLLFSFVF_ 0 0 0 ENST00000304195.7_1_9:85861953-85862094:-|nuORF ENST00000304195.7_1_9:85861953-85862094:-|nuORF ENST00000304195.7_1_9:85861953-85862094:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7559204101562 2 622.813522 1243.61249 NaN NaN NaN NaN NaN NaN NaN 82.075 1 78.518 78.018 79.018 -3.557 0 0 0 0.22583 1 16039 16039 13.906 4.5229 1 35506 8591 23915 23930 34927 34927 0.0004286158336981316 QEDRLFAAL 9 Unmodified _QEDRLFAAL_ 0 0 0 REV__ENSG00000105447|ENST00000253237|GRWD1 REV__ENSG00000105447|ENST00000253237|GRWD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2870483398438 2 531.782556 1061.55056 0.26664 0.00014179 -0.12644 -6.724E-05 0.14019 7.4553E-05 531.7824429942241 122.09 0.99049 117.55 117.14 118.13 -4.5476 92 27 5 0 0 0 0.40602 1 24045 24045 25.399 0 1 127680000 + 35507 14991 23916 23931 34928 34928 0.022245549548870258 QEDRLFAAL 9 Unmodified _QEDRLFAAL_ 0 0 0 REV__ENSG00000105447|ENST00000253237|GRWD1 REV__ENSG00000105447|ENST00000253237|GRWD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2865600585938 2 531.782556 1061.55056 0.85709 0.00045578 -0.63267 -0.00033644 0.22441 0.00011934 531.7822124287893 122.25 1.3154 117.56 117.06 118.37 -4.6873 103 37 4 0 0 0 0.40602 1 23475 23475 25.399 0 1 104910000 + 35508 14991 23916 23931 34929 34929 0.022245549548870258 QEDSFSAEA 9 Unmodified _QEDSFSAEA_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 984.3991088867188 1 983.395246 982.38797 -0.046166 -4.5399E-05 0.26183 0.00025748 0.21566 0.00021208 983.3953833717985 44.89 0.95995 42.1 41.745 42.705 -2.79 40 26 2 0 0 0 0.13708 1 8430 8430 46.021 21.347 1 1804400 35509 5033 23917 23932 34930 34930 -0.10392873237753975 QEDSFSAEA 9 Unmodified _QEDSFSAEA_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 983.395246 982.38797 0.74508 0.00073271 -0.78181 -0.00076883 -0.03673 -3.612E-05 983.3943958655194 42.121 0.87702 42.121 41.794 42.671 0 -0.023994 -0.00064792 NaN 46.021 34 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1791100 35510 5033 23917 23932 -0.10392873237753975 QEDSFSAEA 9 Unmodified _QEDSFSAEA_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 983.395246 982.38797 0.20769 0.00020424 0.097131 9.5518E-05 0.30482 0.00029975 983.3953381536159 44.96 0.81737 42.094 41.77 42.588 -2.8653 -0.050954 0.00021643 NaN 46.021 35 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1973700 35511 5033 23917 23932 -0.10392873237753975 QEDSFSAEA 9 Unmodified _QEDSFSAEA_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 983.395246 982.38797 0.016752 1.6474E-05 0.049816 4.8989E-05 0.066568 6.5463E-05 983.3952416850428 45.013 0.91239 42.266 41.883 42.796 -2.7475 0.12064 0.0001699 NaN 46.021 45 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1662600 35512 5033 23917 23932 -0.10392873237753975 QEEATPIQ 8 Unmodified _QEEATPIQ_ 0 0 0 REV__ENSG00000156009|ENST00000286482|MAGEA8 REV__ENSG00000156009|ENST00000286482|MAGEA8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22625732421875 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 108.5 1 108.5 108 109 0 0 0 0 0.23182 1 21336 21336 0.68139 0 1 + 35513 17237 23918 23933 34931 34931 -0.026113886158100286 QEEDCSLQSL 10 Unmodified _QEEDCSLQSL_ 0 0 0 ENSG00000186648|ENST00000342740|CARMIL3;ENST00000559694.5_1_14:24526437-24530034:+|nuORF ENSG00000186648|ENST00000342740|CARMIL3 ENSG00000186648|ENST00000342740|CARMIL3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3275756835938 2 576.247886 1150.48122 0.3393 0.00019552 -3.2208 -0.001856 -2.8815 -0.0016604 576.2462585419014 147.81 0.45757 142.75 142.39 142.84 -5.0595 16 12 2 0 0 0 0.764 1 28599 28599 29.841 0 1 2782600 35514 7073 23919 23934 34932 34932 -0.0880031684680489 QEEDPEYKKKF 11 Unmodified _QEEDPEYKKKF_ 0 0 0 FAM161A|p.L319Ffs*8|1|0.25|ENSG00000170264|chr2:61840047-61840048|-/A|frameshift_variant;FAM161A|p.L319Wfs*10|1|0.21|ENSG00000170264|chr2:61840048-61840048|A/-|frameshift_variant;nc|ENSG00000170264|Q3B820-2|FAM161A;FAM161A|p.L549Ifs*9|1|0.22|ENSG00000170264|chr2:61836048-61836049|-/T|frameshift_variant;nc|ENSG00000170264|Q3B820|FAM161A;ENSG00000170264|ENST00000404929|FAM161A FAM161A|p.L319Ffs*8|1|0.25|ENSG00000170264|chr2:61840047-61840048|-/A|frameshift_variant FAM161A|p.L319Ffs*8|1|0.25|ENSG00000170264|chr2:61840047-61840048|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 480.9039001464844 3 480.90503 1439.69326 NaN NaN NaN NaN NaN NaN NaN 11.123 1 10.057 9.5567 10.557 -1.0664 0 0 0 0.23698 1 1240 1240 0 0 1 35515 6051 23920 23935 34933 34933 -0.008999021644058303 QEEDSNSDY 9 Unmodified _QEEDSNSDY_ 0 0 0 nc|ENSG00000111834|Q5TD94-2|RSPH4A;RSPH4A|p.N566Mfs*18|1|0.31|ENSG00000111834|chr6:116629595-116629595|A/-|frameshift_variant;nc|ENSG00000111834|Q5TD94-3|RSPH4A;ENSG00000111834|ENST00000229554|RSPH4A nc|ENSG00000111834|Q5TD94-2|RSPH4A nc|ENSG00000111834|Q5TD94-2|RSPH4A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7936401367188 2 543.69654 1085.37853 NaN NaN NaN NaN NaN NaN NaN 49.382 1 46.384 45.884 46.884 -2.999 0 0 0 0.23508 1 9029 9029 12.532 0.89125 1 35516 2651 23921 23936 34934 34934 -0.16074686313936581 QEEDSNSDY 9 Unmodified _QEEDSNSDY_ 0 0 0 nc|ENSG00000111834|Q5TD94-2|RSPH4A;RSPH4A|p.N566Mfs*18|1|0.31|ENSG00000111834|chr6:116629595-116629595|A/-|frameshift_variant;nc|ENSG00000111834|Q5TD94-3|RSPH4A;ENSG00000111834|ENST00000229554|RSPH4A nc|ENSG00000111834|Q5TD94-2|RSPH4A nc|ENSG00000111834|Q5TD94-2|RSPH4A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7966918945312 2 543.69654 1085.37853 NaN NaN NaN NaN NaN NaN NaN 86.378 1 82.428 81.928 82.928 -3.9503 0 0 0 0.23508 1 16442 16442 7.9102 0.62092 1 35517 2651 23921 23936 34935 34935 -0.16074686313936581 QEEEMENGQ 9 Unmodified _QEEEMENGQ_ 0 0 0 nc|ENSG00000198022|A6NJ88|SAGE2P nc|ENSG00000198022|A6NJ88|SAGE2P nc|ENSG00000198022|A6NJ88|SAGE2P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.1891174316406 3 365.141599 1092.40297 -0.15794 -5.7669E-05 -0.77583 -0.00028329 -0.93377 -0.00034096 365.1421884175223 26.942 0.34262 26.942 26.773 27.115 0 17 9 2 0 0 0 0.54851 1 4765 4765 0.96228 0 1 1564800 35518 12547 23922 23937 34936 34936 -0.13953749432062068 QEEEPEEVY 9 Unmodified _QEEEPEEVY_ 0 0 0 REV__RBM33|p.T776Qfs*17|1|0.24|ENSG00000184863|chr7:155742091-155742091|A/-|frameshift_variant REV__RBM33|p.T776Qfs*17|1|0.24|ENSG00000184863|chr7:155742091-155742091|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3386840820312 2 576.240583 1150.46661 0.28717 0.00016548 0.22311 0.00012857 0.51028 0.00029405 576.2407622552182 119.33 0.76318 119.33 119 119.76 0 48 21 3 0 0 0 0.74655 1 23464 23464 15.847 5.6638 1 6697500 + 35519 18918 23923 23938 34937 34937 -0.10260065723332445 QEEEREIY 8 Unmodified _QEEEREIY_ 0 0 0 nc|ENSG00000079387|Q9P0U3-2|SENP1;ENSG00000079387|ENST00000549518|SENP1 nc|ENSG00000079387|Q9P0U3-2|SENP1 nc|ENSG00000079387|Q9P0U3-2|SENP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7675170898438 2 548.251286 1094.48802 0.68963 0.00037809 -2.9711 -0.0016289 -2.2815 -0.0012508 548.7529198610026 103.39 0.30429 103.39 103.17 103.47 0 10 8 2 0 0 0 0.97173 1 20274 20274 7.9102 0 1 1605400 35520 1594 23924 23939 34938 34938 -0.05544635903925155 QEEERRAAVRE 11 Unmodified _QEEERRAAVRE_ 0 0 0 REV__ENSG00000176531|ENST00000292140|PHLDB3 REV__ENSG00000176531|ENST00000292140|PHLDB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2346496582031 3 458.235773 1371.68549 NaN NaN NaN NaN NaN NaN NaN 116.42 1 116.42 115.92 116.92 0 0 0 0 0.22632 1 22925 22925 3.0723 1.1659 1 + 35521 18513 23925 23940 34939 34939 0.014513833586988767 QEEFHACFYA 10 Unmodified _QEEFHACFYA_ 0 0 0 REV__nc|ENSG00000198825|Q9Y2H2-2|INPP5F REV__nc|ENSG00000198825|Q9Y2H2-2|INPP5F MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.759033203125 2 622.755681 1243.49681 NaN NaN NaN NaN NaN NaN NaN 144.1 1 139.43 138.93 139.93 -4.6694 0 0 0 0.22588 1 28522 28522 12.241 1.4167 1 + 35522 19456 23926 23941 34940 34940 -0.1151998553912108 QEEFLGCALA 10 Unmodified _QEEFLGCALA_ 0 0 0 REV__GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant REV__GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2582397460938 2 540.755149 1079.49575 0.091825 4.9655E-05 3.3344 0.0018031 3.4262 0.0018527 540.7567180233093 43.019 0.28279 40.3 40.092 40.374 -2.7191 17 7 4 0 0 0 0.53552 1 8038 8038 22.736 4.5899 1 1435200 + 35523 15485 23927 23942 34941 34941 -0.040821999080208116 QEEGTPAAL 9 Unmodified _QEEGTPAAL_ 0 0 0 ENST00000482294.1_1_22:39545359-39545569:-|nuORF ENST00000482294.1_1_22:39545359-39545569:-|nuORF ENST00000482294.1_1_22:39545359-39545569:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2244873046875 2 458.224539 914.434526 0.4249 0.0001947 -0.22746 -0.00010423 0.19744 9.0473E-05 458.22438308935915 50.626 0.75771 50.626 50.3 51.058 0 35 21 2 0 0 0 0.10573 1 9633 9633 53.833 9.9745 1 2477200 35524 10392 23928 23943 34942 34942 -0.026113886158100286 QEEGTPAAL 9 Unmodified _QEEGTPAAL_ 0 0 0 ENST00000482294.1_1_22:39545359-39545569:-|nuORF ENST00000482294.1_1_22:39545359-39545569:-|nuORF ENST00000482294.1_1_22:39545359-39545569:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.224609375 2 458.224539 914.434526 0.0031988 1.4658E-06 0.23401 0.00010723 0.23721 0.0001087 458.224614042524 53.741 0.66636 50.653 50.321 50.988 -3.0876 33 18 2 0 0 0 0.095246 1 9899 9899 7.4771 0 1 4778800 35525 10392 23928 23943 34943 34943 -0.026113886158100286 QEEGTPAAL 9 Unmodified _QEEGTPAAL_ 0 0 0 ENST00000482294.1_1_22:39545359-39545569:-|nuORF ENST00000482294.1_1_22:39545359-39545569:-|nuORF ENST00000482294.1_1_22:39545359-39545569:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2246398925781 2 458.224539 914.434526 -0.047561 -2.1794E-05 0.29189 0.00013375 0.24433 0.00011196 458.2246427343062 53.813 0.69297 50.718 50.339 51.032 -3.0954 34 19 2 0 0 0 0.13832 1 9939 9939 4.7159 0 1 3547500 35526 10392 23928 23943 34944 34944 -0.026113886158100286 QEEIHEFD 8 Unmodified _QEEIHEFD_ 0 0 0 REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6971435546875 2 523.724904 1045.43525 NaN NaN NaN NaN NaN NaN NaN 50.11 1 47.111 46.611 47.611 -2.999 0 0 0 0.21171 1 9172 9172 15.847 2.3393 1 + 35527 17048 23929 23944 34945 34945 -0.08564593966752909 QEEKQGICF 9 Unmodified _QEEKQGICF_ 0 0 0 REV__ENST00000483667.1_1_3:49147547-49148163:-|nuORF REV__ENST00000483667.1_1_3:49147547-49148163:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2645263671875 2 541.252774 1080.491 NaN NaN NaN NaN NaN NaN NaN 56.573 1 53.397 52.897 53.897 -3.1761 0 0 0 0.18064 1 10530 10530 26.268 0 1 + 35528 18269 23930 23945 34946 34946 -0.0460308405079104 QEELDDDFSY 10 Unmodified _QEELDDDFSY_ 0 0 0 ENST00000491449.5_1_22:50658476-50664613:-|nuORF;nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6;ENST00000489511.5_1_22:50660905-50663012:-|nuORF;ENST00000473946.1_1_22:50662568-50664613:-|nuORF;TUBGCP6|p.L881Cfs*77|1|0.21|ENSG00000128159|chr22:50221719-50221719|C/-|frameshift_variant;ENST00000498611.5_1_22:50657979-50682900:-|nuORF;TUBGCP6|p.E1173Sfs*151|1|0.26|ENSG00000128159|chr22:50220842-50220842|C/-|frameshift_variant ENST00000491449.5_1_22:50658476-50664613:-|nuORF ENST00000491449.5_1_22:50658476-50664613:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7512817382812 2 630.748773 1259.48299 NaN NaN NaN NaN NaN NaN NaN 136.27 1 131.38 130.88 131.88 -4.8951 0 0 0 0.22588 1 26186 26186 6.7232 0 1 35529 3509 23931 23946 34947 34947 -0.1363698455722897 QEELHKIQEQL 11 Unmodified _QEELHKIQEQL_ 0 0 0 ENST00000474550.5_1_2:101587368-101598935:+|nuORF;ENSG00000170485|ENST00000335681|NPAS2 ENST00000474550.5_1_2:101587368-101598935:+|nuORF ENST00000474550.5_1_2:101587368-101598935:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2401123046875 3 465.580658 1393.72014 -0.020955 -9.7564E-06 -0.34013 -0.00015836 -0.36109 -0.00016812 465.9148551048968 39.544 0.38691 37.102 36.929 37.316 -2.4419 21 10 3 0 0 0 0.96117 1 7084 7084 2.2527 0 1 1484300 35530 6073 23932 23947 34948 34948 0.039032064467846794 QEELIERY 8 Unmodified _QEELIERY_ 0 0 0 ENSG00000257594|ENST00000529983|GALNT4 ENSG00000257594|ENST00000529983|GALNT4 ENSG00000257594|ENST00000529983|GALNT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27587890625 2 540.272021 1078.52949 0.27857 0.0001505 -0.34022 -0.00018381 -0.061646 -3.3306E-05 540.2718967068143 88.507 1.8171 84.757 84.189 86.006 -3.7501 166 51 5 0 0 0 0.66247 1 17038 17038 23.148 3.8914 1 401310000 35531 7946 23933 23948 34949 34949 -0.0066345514460408594 QEELLRLRRRK 11 Unmodified _QEELLRLRRRK_ 0 0 0 REV__VSTM4|p.A108Rfs*8|1|0.32|ENSG00000165633|chr10:49107729-49107729|C/-|frameshift_variant REV__VSTM4|p.A108Rfs*8|1|0.32|ENSG00000165633|chr10:49107729-49107729|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 499.65948486328125 3 499.642586 1495.90593 NaN NaN NaN NaN NaN NaN NaN 134.53 1 129.89 129.39 130.39 -4.6399 0 0 0 0.22632 1 26528 26528 0 0 1 + 35532 17788 23934 23949 34950 34950 0.17781073476749043 QEELRMSA 8 Unmodified _QEELRMSA_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7662353515625 2 482.231842 962.44913 0.094425 4.5535E-05 -2.4312 -0.0011724 -2.3368 -0.0011269 482.2306507471387 53.318 0.56905 50.23 49.932 50.501 -3.0876 22 15 2 0 0 0 0.91917 1 9848 9848 20.454 0 1 1264500 + 35533 16048 23935 23950 34951 34951 -0.0335963973931257 QEENFRLE 8 Unmodified _QEENFRLE_ 0 0 0 HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant;HOOK2|p.A624Hfs*8|1|0.25|ENSG00000095066|chr19:12763736-12763736|C/-|frameshift_variant;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2;HOOK1|p.A364Sfs*21|1|0.31|ENSG00000134709|chr1:59848467-59848468|-/A|frameshift_variant;ENST00000465876.5_1_1:60281005-60331594:+|nuORF;nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1 HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2642822265625 2 532.753995 1063.49344 0.076122 4.0554E-05 0.5712 0.00030431 0.64732 0.00034486 532.7542122444651 60.828 0.38261 57.895 57.681 58.064 -2.9333 13 10 2 0 0 0 0.97173 1 11668 11668 7.9102 0 1 876550 35534 1852 23936 23951 34952 34952 -0.035769123214549836 QEENILEISE 10 Unmodified _QEENILEISE_ 0 0 0 nc|ENSG00000146350|Q96NH3-4|TBC1D32 nc|ENSG00000146350|Q96NH3-4|TBC1D32 nc|ENSG00000146350|Q96NH3-4|TBC1D32 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2882690429688 2 602.290608 1202.56666 0.439 0.0002644 -1.7795 -0.0010718 -1.3405 -0.00080738 602.2895105699391 25.048 0.23913 25.048 24.947 25.186 0 11 6 2 0 0 0 0.70381 1 4312 4312 10.8 0.72558 1 471940 35535 12370 23937 23952 34953 34953 -0.026518283895029526 QEEPPMPTT 9 Oxidation (M) _QEEPPM(Oxidation (M))PTT_ QEEPPM(1)PTT QEEPPM(76)PTT 0 0 1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF ENST00000582287.6_1_19:18545725-18546537:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6760864257812 2 523.228965 1044.44338 0.23449 0.00012269 -0.7524 -0.00039368 -0.51791 -0.00027099 523.2285312553715 28.428 1.0796 28.428 27.835 28.914 0 70 30 3 0 0 0 0.039785 1 5104 5104 75.761 31.903 1 2567000 35536 2328 23938 23953 34954 34954 26 -0.07706783041658127 QEEPPMPTT 9 Oxidation (M) _QEEPPM(Oxidation (M))PTT_ QEEPPM(1)PTT QEEPPM(100)PTT 0 0 1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF ENST00000582287.6_1_19:18545725-18546537:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.696533203125 2 523.228965 1044.44338 0.22368 0.00011704 -0.3209 -0.00016791 -0.097218 -5.0867E-05 523.2288720686755 29.583 1.9143 29.583 28.845 30.759 0 142 54 5 0 0 0 0.010532 3 5189 5189;5373;5408 103.35 54.679 1 8551300 35537 2328 23938 23953 34955;34956;34957 34955 26 -0.07706783041658127 QEEPPMPTT 9 Oxidation (M) _QEEPPM(Oxidation (M))PTT_ QEEPPM(1)PTT QEEPPM(100)PTT 0 0 1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF ENST00000582287.6_1_19:18545725-18546537:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6865844726562 2 523.228965 1044.44338 0.24126 0.00012623 -0.6369 -0.00033324 -0.39564 -0.00020701 523.2286500231078 30.683 1.2988 28.566 27.771 29.07 -2.1167 82 36 3 0 0 0 0.010532 1 5500 5500 103.35 48.58 1 3070400 35538 2328 23938 23953 34958 34958 26 -0.07706783041658127 QEEPPMPTT 9 Oxidation (M) _QEEPPM(Oxidation (M))PTT_ QEEPPM(1)PTT QEEPPM(93)PTT 0 0 1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF ENST00000582287.6_1_19:18545725-18546537:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6969604492188 2 523.228965 1044.44338 0.052624 2.7534E-05 -0.0083088 -4.3474E-06 0.044315 2.3187E-05 523.2289432305325 31.767 2.2457 29.537 28.816 31.062 -2.2305 141 63 3 0 0 0 0.019708 4 5667 5645;5667;5907;5959 92.653 54.679 1 11575000 35539 2328 23938 23953 34959;34960;34961;34962 34960 26 -0.07706783041658127 QEEPPMPTT 9 Oxidation (M) _QEEPPM(Oxidation (M))PTT_ QEEPPM(1)PTT QEEPPM(86)PTT 0 0 1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF ENST00000582287.6_1_19:18545725-18546537:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6837158203125 2 523.228965 1044.44338 -0.30924 -0.0001618 0.32593 0.00017054 0.016696 8.736E-06 523.2290997349165 31.651 3.0172 29.624 27.862 30.879 -2.0264 175 85 4 0 0 0 0.02633 1 5569 5569 85.642 45.684 1 9601200 35540 2328 23938 23953 34963 34963 26 -0.07706783041658127 QEEPPMPTT 9 Oxidation (M) _QEEPPM(Oxidation (M))PTT_ QEEPPM(1)PTT QEEPPM(93)PTT 0 0 1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF ENST00000582287.6_1_19:18545725-18546537:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6972045898438 2 523.228965 1044.44338 0.53894 0.00028199 -0.55468 -0.00029022 -0.015741 -8.2362E-06 523.2286582997817 31.764 3.5593 29.616 27.792 31.351 -2.1483 236 101 4 0 0 0 0.019708 1 5368 5368 92.653 50.814 1 8858300 35541 2328 23938 23953 34964 34964 26 -0.07706783041658127 QEERDFVR 8 Unmodified _QEERDFVR_ 0 0 0 REV__PCDH9|p.F580Lfs*14|2|0.24|ENSG00000184226|chr13:67226701-67226701|A/-|frameshift_variant REV__PCDH9|p.F580Lfs*14|2|0.24|ENSG00000184226|chr13:67226701-67226701|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.1957092285156 3 360.180717 1077.52032 -0.34148 -0.000123 0.21287 7.6671E-05 -0.12862 -4.6325E-05 360.1807826873662 15.168 1.3917 15.168 14.807 16.199 0 150 39 5 0 0 0 8448 1 2270 2270 14.838 2.5976 1 21582000 + 35542 18886 23939 23954 34965 34965 -0.01533803710299253 QEERDFVR 8 Unmodified _QEERDFVR_ 0 0 0 REV__PCDH9|p.F580Lfs*14|2|0.24|ENSG00000184226|chr13:67226701-67226701|A/-|frameshift_variant REV__PCDH9|p.F580Lfs*14|2|0.24|ENSG00000184226|chr13:67226701-67226701|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.19061279296875 3 360.180717 1077.52032 -0.5075 -0.00018279 0.40028 0.00014417 -0.10722 -3.8619E-05 360.1808449096896 16.327 1.4145 15.106 14.644 16.058 -1.2219 130 40 4 0 0 0 8448 1 2381 2381 10.074 0 1 9381200 + 35543 18886 23939 23954 34966 34966 -0.01533803710299253 QEESDPRYK 9 Unmodified _QEESDPRYK_ 0 0 0 SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant;SENP6|p.G1004Efs*11|4|0.34|ENSG00000112701|chr6:75713700-75713700|A/-|frameshift_variant;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6 SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant SENP6|p.I864*|1|0.21|ENSG00000112701|chr6:75702940-75702940|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.322021484375 2 576.27001 1150.52547 -0.86041 -0.00049583 0.55526 0.00031998 -0.30515 -0.00017585 576.2702108513716 20.411 0.42356 18.776 18.535 18.959 -1.6351 19 10 3 0 0 0 0.7009 1 3118 3118 6.2058 0 1 1020100 35544 2706 23940 23955 34967 34967 -0.043775446383278904 QEESFKIAE 9 Unmodified _QEESFKIAE_ 0 0 0 REV__ENSG00000079246|ENST00000392132|XRCC5 REV__ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2654418945312 2 540.764029 1079.5135 0.027908 1.5092E-05 1.355 0.00073273 1.3829 0.00074782 540.7646189456262 52.325 0.52371 49.23 48.96 49.484 -3.0954 28 14 3 0 0 0 0.34411 1 9631 9631 29.082 1.4528 1 2064600 + 35545 14393 23941 23956 34968 34968 -0.023071613815318415 QEESKQFVA 9 Unmodified _QEESKQFVA_ 0 0 0 nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9;PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant nc|ENSG00000138496|Q8IXQ6-3|PARP9 nc|ENSG00000138496|Q8IXQ6-3|PARP9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.265625 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 32.577 1 32.577 32.077 33.077 0 0 0 0 0.18705 1 5922 5922 25.399 0 1 35546 4178 23942 23957 34969 34969 -0.01583741661647764 QEESKQFVA 9 Unmodified _QEESKQFVA_ 0 0 0 nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9;PARP9|p.T633Pfs*5|2|0.22|ENSG00000138496|chr3:122537047-122537047|T/-|frameshift_variant nc|ENSG00000138496|Q8IXQ6-3|PARP9 nc|ENSG00000138496|Q8IXQ6-3|PARP9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2655029296875 2 533.264196 1064.51384 0.40097 0.00021382 0.090422 4.8219E-05 0.49139 0.00026204 533.2644508375522 34.779 0.28286 32.502 32.342 32.625 -2.2766 11 7 2 0 0 0 0.2219 1 6102 6102 36.127 3.8215 1 838950 35547 4178 23942 23957 34970 34970 -0.01583741661647764 QEESWLRGS 9 Unmodified _QEESWLRGS_ 0 0 0 REV__ENSG00000113621|ENST00000358387|TXNDC15 REV__ENSG00000113621|ENST00000358387|TXNDC15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7923583984375 2 546.259445 1090.50434 0.35221 0.0001924 -0.23416 -0.00012791 0.11804 6.4483E-05 546.2593012178608 31.268 1.0185 31.268 30.825 31.844 0 99 28 5 0 0 0 0.17935 1 5628 5628 39.95 13.682 1 64776000 + 35548 15350 23943 23958 34971 34971 -0.037295099471975846 QEESWLRGS 9 Unmodified _QEESWLRGS_ 0 0 0 REV__ENSG00000113621|ENST00000358387|TXNDC15 REV__ENSG00000113621|ENST00000358387|TXNDC15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.259445 1090.50434 0.16384 8.9497E-05 -0.0053626 -2.9294E-06 0.15847 8.6568E-05 546.2594470352841 33.725 1.0799 31.407 30.869 31.949 -2.3175 0.049768 0.00017162 NaN 39.95 103 30 5 NaN NaN NaN NaN 0 NaN NaN 0 57743000 + 35549 15350 23943 23958 -0.037295099471975846 QEESWLRGS 9 Unmodified _QEESWLRGS_ 0 0 0 REV__ENSG00000113621|ENST00000358387|TXNDC15 REV__ENSG00000113621|ENST00000358387|TXNDC15 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.259445 1090.50434 0.24322 0.00013286 -0.092098 -5.031E-05 0.15113 8.2554E-05 546.259402413397 33.529 1.2895 31.382 30.828 32.118 -2.1468 0.024489 7.6858E-05 NaN 39.95 114 36 5 NaN NaN NaN NaN 0 NaN NaN 0 58651000 + 35550 15350 23943 23958 -0.037295099471975846 QEESWLRGS 9 Unmodified _QEESWLRGS_ 0 0 0 REV__ENSG00000113621|ENST00000358387|TXNDC15 REV__ENSG00000113621|ENST00000358387|TXNDC15 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.259445 1090.50434 0.478 0.00026111 -0.33536 -0.00018319 0.14264 7.7918E-05 546.2592684107605 33.588 1.1778 31.372 30.944 32.122 -2.2158 0.015157 -0.00018891 NaN 39.95 113 33 5 NaN NaN NaN NaN 0 NaN NaN 0 52451000 + 35551 15350 23943 23958 -0.037295099471975846 QEETVRIVA 9 Unmodified _QEETVRIVA_ 0 0 0 ENSG00000145012|ENST00000617246|LPP;ENST00000488670.1_1_7:100469170-100470405:+|nuORF;ENST00000476870.5_1_7:100468185-100470922:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6 ENSG00000145012|ENST00000617246|LPP ENSG00000145012|ENST00000617246|LPP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2708740234375 2 522.787838 1043.56112 -0.12053 -6.3014E-05 0.22398 0.00011709 0.10344 5.4079E-05 522.7877938482845 62.972 0.56614 62.972 62.659 63.225 0 27 15 3 0 0 0 0.27464 1 12109 12109 37.075 17.449 1 2497600 35552 4588 23944 23959 34972 34972 0.04108537609317864 QEETVRIVA 9 Unmodified _QEETVRIVA_ 0 0 0 ENSG00000145012|ENST00000617246|LPP;ENST00000488670.1_1_7:100469170-100470405:+|nuORF;ENST00000476870.5_1_7:100468185-100470922:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6 ENSG00000145012|ENST00000617246|LPP ENSG00000145012|ENST00000617246|LPP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2822875976562 2 522.787838 1043.56112 -0.39763 -0.00020788 0.32098 0.0001678 -0.076657 -4.0075E-05 522.7879625822287 66.261 0.52245 62.765 62.522 63.044 -3.4965 26 14 2 0 0 0 0.80264 1 12393 12393 8.1555 0 1 1351100 35553 4588 23944 23959 34973 34973 0.04108537609317864 QEETVRIVA 9 Unmodified _QEETVRIVA_ 0 0 0 ENSG00000145012|ENST00000617246|LPP;ENST00000488670.1_1_7:100469170-100470405:+|nuORF;ENST00000476870.5_1_7:100468185-100470922:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6 ENSG00000145012|ENST00000617246|LPP ENSG00000145012|ENST00000617246|LPP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2713012695312 2 522.787838 1043.56112 0.36209 0.0001893 -0.74995 -0.00039206 -0.38785 -0.00020276 522.7874555326634 66.083 0.5932 62.8 62.511 63.104 -3.2832 28 16 2 0 0 0 0.60663 1 12439 12439 26.268 8.1218 1 2184500 35554 4588 23944 23959 34974 34974 0.04108537609317864 QEFAGPSGK 9 Unmodified _QEFAGPSGK_ 0 0 0 ENSG00000185432|ENST00000332160|METTL7A ENSG00000185432|ENST00000332160|METTL7A ENSG00000185432|ENST00000332160|METTL7A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24609375 2 460.727249 919.439946 0.24635 0.0001135 1.3091 0.00060313 1.5554 0.00071662 460.72778222125913 29.935 0.41391 29.935 29.716 30.13 0 14 11 2 0 0 0 0.69192 1 5354 5354 10.074 0 1 586630 35555 6989 23945 23960 34975 34975 -0.022996650333197977 QEFAGPSGK 9 Unmodified _QEFAGPSGK_ 0 0 0 ENSG00000185432|ENST00000332160|METTL7A ENSG00000185432|ENST00000332160|METTL7A ENSG00000185432|ENST00000332160|METTL7A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.232177734375 2 460.727249 919.439946 0.46582 0.00021462 1.5569 0.0007173 2.0227 0.00093191 460.7280623601862 32.04 0.72967 29.891 29.551 30.281 -2.1483 24 20 2 0 0 0 0.69192 1 5504 5504 14.838 0 1 519970 35556 6989 23945 23960 34976 34976 -0.022996650333197977 QEFAVAGY 8 Unmodified _QEFAVAGY_ 0 0 0 ENST00000497842.6_1_17:15903346-15927855:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19 ENST00000497842.6_1_17:15903346-15927855:+|nuORF ENST00000497842.6_1_17:15903346-15927855:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 885.4171752929688 1 884.414859 883.407583 0.59622 0.00052731 0.04939 4.3681E-05 0.64561 0.00057099 884.4149370082449 97.759 0.47755 97.759 97.541 98.018 0 18 13 2 0 0 0 0.087158 2 19155 19152;19155 77.984 43.882 1 2228000 35557 1074 23946 23961 34977;34978 34978 -0.03878452436333646 QEFAVAGY 8 Unmodified _QEFAVAGY_ 0 0 0 ENST00000497842.6_1_17:15903346-15927855:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19 ENST00000497842.6_1_17:15903346-15927855:+|nuORF ENST00000497842.6_1_17:15903346-15927855:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 885.4183349609375 1 884.414859 883.407583 0.256 0.00022641 0.067049 5.9299E-05 0.32304 0.00028571 884.4150103150953 102.28 0.59149 98.09 97.819 98.411 -4.1861 27 16 2 0 0 0 0.07389 3 20123 20072;20120;20123 71.134 40.909 1 2729400 35558 1074 23946 23961 34979;34980;34981 34981 -0.03878452436333646 QEFAVAGY 8 Unmodified _QEFAVAGY_ 0 0 0 ENST00000497842.6_1_17:15903346-15927855:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19 ENST00000497842.6_1_17:15903346-15927855:+|nuORF ENST00000497842.6_1_17:15903346-15927855:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 885.41748046875 1 884.414859 883.407583 0.53952 0.00047716 -0.24644 -0.00021796 0.29308 0.0002592 884.4147081164964 102.39 0.48412 98.073 97.84 98.324 -4.3208 19 13 2 0 0 0 0.097641 2 19627 19579;19627 63.563 37.222 1 1741100 35559 1074 23946 23961 34982;34983 34983 -0.03878452436333646 QEFAVAGY 8 Unmodified _QEFAVAGY_ 0 0 0 ENST00000497842.6_1_17:15903346-15927855:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19 ENST00000497842.6_1_17:15903346-15927855:+|nuORF ENST00000497842.6_1_17:15903346-15927855:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 884.414859 883.407583 0.64061 0.00056657 -0.12688 -0.00011221 0.51374 0.00045436 884.4145932601726 102.08 0.5876 98.054 97.8 98.388 -4.0212 0.059898 -4.3096E-05 NaN 71.134 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2302500 35560 1074 23946 23961 -0.03878452436333646 QEFEEKSGRTF 11 Unmodified _QEFEEKSGRTF_ 0 0 0 ENST00000378726.1_1_1:1477448-1480390:-|nuORF;ENSG00000160075|ENST00000291386|SSU72 ENST00000378726.1_1_1:1477448-1480390:-|nuORF ENST00000378726.1_1_1:1477448-1480390:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.756103515625 3 453.217608 1356.63099 -0.093027 -4.2161E-05 0.48468 0.00021966 0.39165 0.0001775 453.21777979210685 43.641 0.34957 40.893 40.73 41.08 -2.7475 14 9 2 0 0 0 0.95899 1 7866 7866 11.065 1.8215 1 1261800 35561 5228 23947 23962 34984 34984 -0.03305628512725889 QEFEEKSGRTF 11 Unmodified _QEFEEKSGRTF_ 0 0 0 ENST00000378726.1_1_1:1477448-1480390:-|nuORF;ENSG00000160075|ENST00000291386|SSU72 ENST00000378726.1_1_1:1477448-1480390:-|nuORF ENST00000378726.1_1_1:1477448-1480390:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 453.217608 1356.63099 -0.18174 -8.2369E-05 0.2721 0.00012332 0.090358 4.0952E-05 453.5523055505233 43.703 0.3821 40.913 40.736 41.118 -2.79 0.010036 2.241E-05 NaN 28.271 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1248700 35562 5228 23947 23962 -0.03305628512725889 QEFEEKSGRTF 11 Unmodified _QEFEEKSGRTF_ 0 0 0 ENST00000378726.1_1_1:1477448-1480390:-|nuORF;ENSG00000160075|ENST00000291386|SSU72 ENST00000378726.1_1_1:1477448-1480390:-|nuORF ENST00000378726.1_1_1:1477448-1480390:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 453.217608 1356.63099 -0.09161 -4.1519E-05 -0.16555 -7.5029E-05 -0.25716 -0.00011655 453.217511453219 43.669 0.42744 40.903 40.722 41.149 -2.7661 1.9148E-05 -0.00057264 NaN 28.271 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1018800 35563 5228 23947 23962 -0.03305628512725889 QEFKKKDKT 9 Unmodified _QEFKKKDKT_ 0 0 0 ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1;nc|ENSG00000118557|Q8TBY8-4|PMFBP1 ENSG00000118557|ENST00000237353|PMFBP1 ENSG00000118557|ENST00000237353|PMFBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3174438476562 2 576.324588 1150.63462 0.23744 0.00013684 -1.5884 -0.00091542 -1.3509 -0.00077858 576.8269039159919 136.4 0.13814 131.57 131.49 131.63 -4.8307 5 3 2 0 0 0 0.69259 1 26255 26255 6.7232 0 1 1564600 35564 3044 23948 23963 34985 34985 0.06533086051786086 QEGALFPVLSS 11 Unmodified _QEGALFPVLSS_ 0 0 0 ENST00000376741.4_1_17:46005306-46005357:+|nuORF ENST00000376741.4_1_17:46005306-46005357:+|nuORF ENST00000376741.4_1_17:46005306-46005357:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.1935119628906 3 383.20464 1146.59209 NaN NaN NaN NaN NaN NaN NaN 72.801 1 69.262 68.762 69.762 -3.5385 0 0 0 0.22632 1 13805 13805 0.58532 0.54153 1 35565 9255 23949 23964 34986 34986 0.0246569092360005 QEGERPLS 8 Unmodified _QEGERPLS_ 0 0 0 REV__nc|ENSG00000123338|P55160-2|NCKAP1L REV__nc|ENSG00000123338|P55160-2|NCKAP1L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2299499511719 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 140.6 1 135.95 135.45 136.45 -4.6493 0 0 0 0.23837 1 27759 27759 0.12286 0 1 + 35566 15723 23950 23965 34987 34987 -0.0148856652166387 QEGESEPRY 9 Unmodified _QEGESEPRY_ 0 0 0 REV__ENST00000474482.1_1_7:100660763-100660886:+|nuORF REV__ENST00000474482.1_1_7:100660763-100660886:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7738037109375 2 547.741085 1093.46762 NaN NaN NaN NaN NaN NaN NaN 148.63 1 148.63 148.13 149.13 0 0 0 0 0.19652 1 29748 29748 1.2148 0.80657 1 + 35567 22083 23951 23966 34988 34988 -0.07537806563755112 QEGFRPDA 8 Unmodified _QEGFRPDA_ 0 0 0 ENST00000294753.8_1_1:247493325-247494987:-|nuORF ENST00000294753.8_1_1:247493325-247494987:-|nuORF ENST00000294753.8_1_1:247493325-247494987:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2392883300781 2 460.217049 918.419545 NaN NaN NaN NaN NaN NaN NaN 40.154 1 37.519 37.019 38.019 -2.6348 0 0 0 0.20896 1 7474 7474 18.135 3.2967 1 35568 8491 23952 23967 34989 34989 -0.04292835693149755 QEGHKERREQ 10 Unmodified _QEGHKERREQ_ 0 0 0 ENST00000258807.5_1_14:24777962-24780611:-|nuORF ENST00000258807.5_1_14:24777962-24780611:-|nuORF ENST00000258807.5_1_14:24777962-24780611:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 432.8941345214844 3 432.884963 1295.63306 NaN NaN NaN NaN NaN NaN NaN 32.467 1 30.237 29.737 30.737 -2.2305 0 0 0 0.22588 1 5917 5917 1.7423 0.52744 1 35569 8271 23953 23968 34990 34990 -0.002931549842514869 QEGHLEVTQY 10 Unmodified _QEGHLEVTQY_ 0 0 0 ENSG00000187017|ENST00000645284|ESPN;ESPN|p.P431Hfs*32|1|0.28|ENSG00000187017|chr1:6445759-6445759|C/-|frameshift_variant ENSG00000187017|ENST00000645284|ESPN ENSG00000187017|ENST00000645284|ESPN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2877807617188 2 602.28566 1202.55677 NaN NaN NaN NaN NaN NaN NaN 56.322 1 53.146 52.646 53.646 -3.1761 0 0 0 0.22576 1 10477 10477 14.838 0.93222 1 35570 7089 23954 23969 34991 34991 -0.03640971604227161 QEGIANITA 9 Unmodified _QEGIANITA_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2339782714844 2 458.740357 915.46616 0.52988 0.00024308 -0.28503 -0.00013075 0.24486 0.00011233 458.7401367950393 76.947 0.94489 76.947 76.516 77.461 0 62 26 3 0 0 0 0.025254 1 14929 14929 96.111 20.35 1 7508000 35571 7390 23955 23970 34992 34992 0.00504604138131981 QEGIANITA 9 Unmodified _QEGIANITA_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2248840332031 2 458.740357 915.46616 -0.067789 -3.1097E-05 0.071545 3.282E-05 0.003756 1.723E-06 458.74033779280944 80.432 0.87776 76.922 76.51 77.388 -3.5102 58 24 3 0 0 0 0.027495 1 15676 15676 85.642 19.185 1 7224100 35572 7390 23955 23970 34993 34993 0.00504604138131981 QEGIANITA 9 Unmodified _QEGIANITA_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23358154296875 2 458.740357 915.46616 -0.060234 -2.7632E-05 0.2174 9.9731E-05 0.15717 7.2099E-05 458.7403856086703 80.775 0.90927 76.936 76.564 77.474 -3.8392 62 25 3 0 0 0 0.13813 1 15321 15321 53.833 23.608 1 6250500 35573 7390 23955 23970 34994 34994 0.00504604138131981 QEGIANITA 9 Unmodified _QEGIANITA_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2391357421875 2 458.740357 915.46616 -0.19781 -9.0744E-05 0.36883 0.0001692 0.17102 7.8452E-05 458.74047313914804 80.705 0.90942 77.017 76.547 77.456 -3.6879 62 25 3 0 0 0 0.027495 1 15337 15337 96.111 29.654 1 6559300 35574 7390 23955 23970 34995 34995 0.00504604138131981 QEGKIPDE 8 Unmodified _QEGKIPDE_ 0 0 0 ENSG00000177646|ENST00000308982|ACAD9;ENST00000505192.5_1_3:128598473-128627108:+|nuORF ENSG00000177646|ENST00000308982|ACAD9 ENSG00000177646|ENST00000308982|ACAD9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22540283203125 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 55.811 1 52.927 52.427 53.427 -2.8837 0 0 0 0.22699 1 10687 10687 0.62683 0.49901 1 35575 6526 23956 23971 34996 34996 -0.026113886158213973 QEGKYRVY 8 Unmodified _QEGKYRVY_ 0 0 0 BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2706909179688 2 521.769448 1041.52434 -0.53341 -0.00027831 0.14544 7.5888E-05 -0.38796 -0.00020243 521.7694897473333 74.228 1.0334 70.551 70.14 71.174 -3.6764 75 29 3 0 0 0 0.60622 1 14132 14132 21.747 3.3736 1 14849000 35576 327 23957 23972 34997 34997 0.005242857834218739 QEGLAGGGAR 10 Unmodified _QEGLAGGGAR_ 0 0 0 ENST00000588267.5_1_19:9879292-9879355:-|nuORF ENST00000588267.5_1_19:9879292-9879355:-|nuORF ENST00000588267.5_1_19:9879292-9879355:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2336120605469 2 458.235773 914.456993 NaN NaN NaN NaN NaN NaN NaN 80.347 1 76.837 76.337 77.337 -3.5102 0 0 0 0.15215 1 15692 15692 36.506 4.2007 1 35577 11570 23958 23973 34998 34998 -0.003657444275177113 QEGLYNVSR 9 Unmodified _QEGLYNVSR_ 0 0 0 ENST00000483825.5_1_1:167404074-167487702:-|nuORF ENST00000483825.5_1_1:167404074-167487702:-|nuORF ENST00000483825.5_1_1:167404074-167487702:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.273193359375 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 49.652 1 49.652 49.152 50.152 0 0 0 0 0.18705 1 9390 9390 25.399 4.9457 1 35578 10422 23959 23974 34999 34999 -0.004609195675357114 QEGQGHGGPT 10 Unmodified _QEGQGHGGPT_ 0 0 0 REV__ENST00000475002.1_1_20:44592445-44592709:-|nuORF REV__ENST00000475002.1_1_20:44592445-44592709:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1460876464844 3 323.145784 966.415522 NaN NaN NaN NaN NaN NaN NaN 137.4 1 132.48 131.98 132.98 -4.9216 0 0 0 0.22588 1 26414 26414 0.69767 0.07084 1 + 35579 22090 23960 23975 35000 35000 -0.06902925186841458 QEGQTAVKT 9 Unmodified _QEGQTAVKT_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2;ENST00000497765.1_1_3:183515808-183519351:+|nuORF ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24774169921875 2 481.251089 960.487624 -0.20207 -9.7244E-05 -1.0036 -0.00048299 -1.2057 -0.00058023 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 0.40602 1 7817 7817 25.399 3.6527 1 85144000 35580 5474 23961 23976 35001 35001 0.005799891668516466 QEGRKPRKRWQ 11 Unmodified _QEGRKPRKRWQ_ 0 0 0 ENST00000308893.8_1_16:29985169-29989140:+|nuORF ENST00000308893.8_1_16:29985169-29989140:+|nuORF ENST00000308893.8_1_16:29985169-29989140:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.263916015625 3 490.279647 1467.81711 0.097254 4.7682E-05 -0.23148 -0.00011349 -0.13422 -6.5806E-05 490.27979906408507 47.233 0.1026 44.291 44.24 44.342 -2.9421 4 2 2 0 0 0 0.78057 1 8603 8603 6.2344 3.9816 1 1000600 35581 8630 23962 23977 35002 35002 0.10191658237113188 QEGSTDNDDS 10 Unmodified _QEGSTDNDDS_ 0 0 0 ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant;ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant;ENSG00000171940|ENST00000371471|ZNF217 ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 534.191162109375 2 534.191622 1066.36869 NaN NaN NaN NaN NaN NaN NaN 7.2976 1 7.2976 6.7976 7.7976 0 0 0 0 0.22588 1 651 651 0 0 1 35582 6186 23963 23978 35003 35003 -0.161838743193357 QEGSVTRLWK 10 Unmodified _QEGSVTRLWK_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2794189453125 2 602.327662 1202.64077 NaN NaN NaN NaN NaN NaN NaN 64.197 1 60.781 60.281 61.281 -3.4158 0 0 0 0.22588 1 12006 12006 8.1555 1.9497 1 35583 6864 23964 23979 35004 35004 0.04755604283309367 QEGSYFREA 9 Unmodified _QEGSYFREA_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7796630859375 2 543.74617 1085.47779 0.06919 3.7622E-05 -0.1037 -5.6384E-05 -0.034506 -1.8762E-05 543.746064548039 50.912 0.56259 48.03 47.786 48.348 -2.8824 33 15 3 0 0 0 0.1428 1 9702 9702 37.075 24.834 1 2757500 35584 4188 23965 23980 35005 35005 -0.061531988385240766 QEGSYFREA 9 Unmodified _QEGSYFREA_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7811279296875 2 543.74617 1085.47779 0.059084 3.2127E-05 0.11284 6.1355E-05 0.17192 9.3481E-05 543.7462460416289 50.98 0.56214 47.935 47.735 48.297 -3.0453 32 15 3 0 0 0 0.1155 1 9372 9372 63.227 17.528 1 2583700 35585 4188 23965 23980 35006 35006 -0.061531988385240766 QEGSYFREA 9 Unmodified _QEGSYFREA_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78076171875 2 543.74617 1085.47779 0.021031 1.1436E-05 0.20277 0.00011025 0.2238 0.00012169 543.7461698058092 50.968 0.59679 47.916 47.609 48.206 -3.0517 32 16 3 0 0 0 0.028912 1 9403 9403 93.938 40.105 1 2865700 35586 4188 23965 23980 35007 35007 -0.061531988385240766 QEGSYFREA 9 Unmodified _QEGSYFREA_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.74617 1085.47779 0.66653 0.00036242 -0.46268 -0.00025158 0.20385 0.00011084 543.7458848224765 47.88 0.52721 47.88 47.612 48.139 0 -0.060333 -0.00042872 NaN 93.938 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3939400 35587 4188 23965 23980 -0.061531988385240766 QEGYPPPP 8 Unmodified _QEGYPPPP_ 0 0 0 LATS1|p.Y808Nfs*12|1|0.09|ENSG00000131023|chr6:149680046-149680047|-/ATTTATT|frameshift_variant;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;LATS1|p.F1039Lfs*19|1|0.19|ENSG00000131023|chr6:149662005-149662005|A/-|frameshift_variant;ENSG00000131023|ENST00000543571|LATS1;LATS1|p.K662Nfs*3|1|0.44|ENSG00000131023|chr6:149683103-149683103|T/-|frameshift_variant;nc|ENSG00000131023|O95835-2|LATS1;LATS1|p.E689Nfs*18|1|0.35|ENSG00000131023|chr6:149680404-149680404|T/-|frameshift_variant LATS1|p.Y808Nfs*12|1|0.09|ENSG00000131023|chr6:149680046-149680047|-/ATTTATT|frameshift_variant LATS1|p.Y808Nfs*12|1|0.09|ENSG00000131023|chr6:149680046-149680047|-/ATTTATT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 885.41943359375 1 884.414859 883.407583 0.098666 8.7262E-05 0.6753 0.00059725 0.77397 0.00068451 884.415623356648 52.196 0.23875 49.145 49.004 49.242 -3.0517 9 6 2 0 0 0 0.7545 2 9625 9621;9625 6.3541 0 1 438430 35588 3656 23966 23981 35008;35009 35009 -0.03878452436333646 QEHEQRLAA 9 Unmodified _QEHEQRLAA_ 0 0 0 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2731323242188 2 541.272887 1080.53122 NaN NaN NaN NaN NaN NaN NaN 17.464 1 16.153 15.653 16.653 -1.3109 0 0 0 0.19512 1 2798 2798 12.241 5.6103 1 35589 3978 23967 23982 35010 35010 -0.005824013360097524 QEHEQRLAA 9 Unmodified _QEHEQRLAA_ 0 0 0 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2731323242188 2 541.272887 1080.53122 NaN NaN NaN NaN NaN NaN NaN 17.473 1 16.162 15.662 16.662 -1.3109 0 0 0 0.17061 1 2799 2799 27.629 9.4825 1 35590 3978 23967 23982 35011 35011 -0.005824013360097524 QEHFEIYGA 9 Unmodified _QEHFEIYGA_ 0 0 0 ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant;ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5 ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7781982421875 2 547.251089 1092.48762 0.16391 8.9701E-05 2.0167 0.0011037 2.1806 0.0011934 547.7537606768319 90.665 0.42883 90.665 90.543 90.972 0 16 11 2 0 0 0 0.09885 3 17713 17710;17713;17718 56.177 32.156 1 1764100 35591 12 23968 23983 35012;35013;35014 35013 -0.05492010833131644 QEHFEIYGA 9 Unmodified _QEHFEIYGA_ 0 0 0 ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant;ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5 ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77783203125 2 547.251089 1092.48762 0.22435 0.00012278 0.34497 0.00018878 0.56932 0.00031156 547.2510006096301 94.855 0.42516 90.805 90.676 91.101 -4.0496 19 11 2 0 0 0 0.041554 2 18593 18593;18606 74.929 44.704 1 1863300 35592 12 23968 23983 35015;35016 35015 -0.05492010833131644 QEHFEIYGA 9 Unmodified _QEHFEIYGA_ 0 0 0 ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant;ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5 ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7711791992188 2 547.251089 1092.48762 0.18886 0.00010336 0.69271 0.00037909 0.88157 0.00048244 547.7528945152538 95.015 0.526 90.824 90.438 90.964 -4.1912 22 14 2 0 0 0 0.067773 2 18139 18103;18139 65.235 42.087 1 2092500 35593 12 23968 23983 35017;35018 35018 -0.05492010833131644 QEHFEIYGA 9 Unmodified _QEHFEIYGA_ 0 0 0 ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant;ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5 ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7774658203125 2 547.251089 1092.48762 0.096175 5.2632E-05 0.89002 0.00048707 0.9862 0.0005397 547.2515206284123 94.703 0.58891 90.822 90.501 91.09 -3.881 24 16 2 0 0 0 0.71527 1 18107 18107 19.257 11.968 1 1861700 35594 12 23968 23983 35019 35019 -0.05492010833131644 QEHFQALTA 9 Unmodified _QEHFQALTA_ 0 0 0 ENSG00000226742|ENST00000451882|HSBP1L1 ENSG00000226742|ENST00000451882|HSBP1L1 ENSG00000226742|ENST00000451882|HSBP1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.266357421875 2 522.759081 1043.50361 -0.23414 -0.0001224 0.43825 0.0002291 0.20411 0.0001067 522.7592319744373 67.221 0.73529 64.113 63.685 64.421 -3.1086 56 20 4 0 0 0 0.23492 1 13052 13052 45.7 18.816 1 5839500 35595 7793 23969 23984 35020 35020 -0.01640304596230635 QEHFQALTA 9 Unmodified _QEHFQALTA_ 0 0 0 ENSG00000226742|ENST00000451882|HSBP1L1 ENSG00000226742|ENST00000451882|HSBP1L1 ENSG00000226742|ENST00000451882|HSBP1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2677612304688 2 522.759081 1043.50361 -0.34121 -0.00017837 0.94293 0.00049293 0.60172 0.00031456 522.7593070210602 67.389 0.99203 63.893 63.319 64.311 -3.4965 74 27 4 0 0 0 0.10047 1 12678 12678 62.573 31.936 1 4651500 35596 7793 23969 23984 35021 35021 -0.01640304596230635 QEHFQALTA 9 Unmodified _QEHFQALTA_ 0 0 0 ENSG00000226742|ENST00000451882|HSBP1L1 ENSG00000226742|ENST00000451882|HSBP1L1 ENSG00000226742|ENST00000451882|HSBP1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.281494140625 2 522.759081 1043.50361 0.37149 0.0001942 0.14725 7.6977E-05 0.51874 0.00027117 522.7589809079133 67.175 0.96619 63.848 63.273 64.239 -3.3268 77 27 4 0 0 0 0.050901 1 12664 12664 75.761 45.124 1 5276500 35597 7793 23969 23984 35022 35022 -0.01640304596230635 QEHFRSALQRS 11 Unmodified _QEHFRSALQRS_ 0 0 0 REV__nc|ENSG00000102081|Q06787-11|FMR1 REV__nc|ENSG00000102081|Q06787-11|FMR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7654724121094 3 453.568975 1357.6851 0.033207 1.5062E-05 -1.1353 -0.00051493 -1.1021 -0.00049987 453.5684847156091 58.099 0.61878 54.894 54.476 55.095 -3.2052 34 17 3 0 0 0 0.95899 1 10798 10798 5.1984 0 1 1412200 + 35598 23978 23970 23985 35023 35023 0.02056008429508438 QEHGLKYPA 9 Unmodified _QEHGLKYPA_ 0 0 0 nc|ENSG00000242485|Q9BYC9-2|MRPL20;MRPL20|p.I87S|1|0.15|ENSG00000242485|chr1:1405825-1405825|A/C|missense_variant;ENSG00000242485|ENST00000344843|MRPL20 nc|ENSG00000242485|Q9BYC9-2|MRPL20 nc|ENSG00000242485|Q9BYC9-2|MRPL20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2601318359375 2 521.769448 1041.52434 -0.21113 -0.00011016 -0.36295 -0.00018937 -0.57407 -0.00029953 521.7692481146607 33.237 0.76383 30.919 30.662 31.426 -2.3175 35 21 2 0 0 0 0.026664 3 6084 6061;6065;6084 85.272 47.298 1 2481100 35599 12619 23971 23986 35024;35025;35026 35026 0.005242857834218739 QEHGLKYPA 9 Unmodified _QEHGLKYPA_ 0 0 0 nc|ENSG00000242485|Q9BYC9-2|MRPL20;MRPL20|p.I87S|1|0.15|ENSG00000242485|chr1:1405825-1405825|A/C|missense_variant;ENSG00000242485|ENST00000344843|MRPL20 nc|ENSG00000242485|Q9BYC9-2|MRPL20 nc|ENSG00000242485|Q9BYC9-2|MRPL20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2708129882812 2 521.769448 1041.52434 -0.49065 -0.00025601 0.27991 0.00014605 -0.21074 -0.00010996 521.7695702072854 33.089 0.7375 30.942 30.655 31.393 -2.1468 39 20 2 0 0 0 0.09885 2 5767 5765;5767 56.177 27.095 1 2954500 35600 12619 23971 23986 35027;35028 35028 0.005242857834218739 QEHGLKYPA 9 Unmodified _QEHGLKYPA_ 0 0 0 nc|ENSG00000242485|Q9BYC9-2|MRPL20;MRPL20|p.I87S|1|0.15|ENSG00000242485|chr1:1405825-1405825|A/C|missense_variant;ENSG00000242485|ENST00000344843|MRPL20 nc|ENSG00000242485|Q9BYC9-2|MRPL20 nc|ENSG00000242485|Q9BYC9-2|MRPL20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2705688476562 2 521.769448 1041.52434 0.46869 0.00024455 -0.7422 -0.00038726 -0.27351 -0.00014271 521.7690443039177 33.138 0.68565 30.922 30.633 31.319 -2.2158 36 19 2 0 0 0 0.09143 1 5756 5756 58.679 22.552 1 2395100 35601 12619 23971 23986 35029 35029 0.005242857834218739 QEHKVKPP 8 Unmodified _QEHKVKPP_ 0 0 0 ENSG00000206043|ENST00000579455|C18orf63 ENSG00000206043|ENST00000579455|C18orf63 ENSG00000206043|ENST00000579455|C18orf63 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7756042480469 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 29.436 1 29.436 28.936 29.936 0 0 0 0 0.21486 1 5260 5260 9.3474 1.4373 1 35602 7663 23972 23987 35030 35030 0.05220893508658264 QEHLERGPL 9 Unmodified _QEHLERGPL_ 0 0 0 ENST00000360943.9_1_17:47004563-47004818:+|nuORF ENST00000360943.9_1_17:47004563-47004818:+|nuORF ENST00000360943.9_1_17:47004563-47004818:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2126159667969 3 360.192845 1077.55671 -0.18996 -6.8424E-05 0.277 9.9773E-05 0.087035 3.1349E-05 360.19287266674075 62.698 0.59513 59.736 59.392 59.987 -2.9614 45 16 4 0 0 0 0.42432 1 12106 12106 2.6312 2.223 1 5154700 35603 9016 23973 23988 35031 35031 0.02103073186435722 QEHPIPLSY 9 Unmodified _QEHPIPLSY_ 0 0 0 ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1 ENST00000571307.1_1_17:5433304-5487319:-|nuORF ENST00000571307.1_1_17:5433304-5487319:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.790283203125 2 542.277106 1082.53966 0.074039 4.0149E-05 -0.057701 -3.129E-05 0.016337 8.8593E-06 542.2770166456352 50.9 0.74166 48.017 47.679 48.42 -2.8824 62 20 4 0 0 0 0.46541 1 9628 9628 21.747 4.6338 1 14709000 35604 1812 23974 23989 35032 35032 0.001691525806336358 QEHPIPLSY 9 Unmodified _QEHPIPLSY_ 0 0 0 ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1 ENST00000571307.1_1_17:5433304-5487319:-|nuORF ENST00000571307.1_1_17:5433304-5487319:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.277106 1082.53966 0.074039 4.0149E-05 -0.057701 -3.129E-05 0.016337 8.8593E-06 542.2770166456352 50.9 0.74166 48.017 47.679 48.42 -2.8824 0.023715 0.00017701 NaN 21.747 62 20 4 NaN NaN NaN NaN 0 NaN NaN 0 14709000 35605 1812 23974 23989 0.001691525806336358 QEHVPTSSA 9 Unmodified _QEHVPTSSA_ 0 0 0 WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2 WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7291259765625 2 478.227613 954.440674 0.01302 6.2267E-06 -0.082463 -3.9436E-05 -0.069442 -3.3209E-05 478.2274953529487 18.747 0.6172 17.436 17.245 17.862 -1.3109 25 17 2 0 0 0 2.4079E-13 2 3063 3042;3063 163.04 101.68 1 2644100 35606 5612 23975 23990 35033;35034 35034 -0.038368703842706964 QEHVPTSSA 9 Unmodified _QEHVPTSSA_ 0 0 0 WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2 WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7386169433594 2 478.227613 954.440674 -0.36749 -0.00017574 0.38415 0.00018371 0.016662 7.9683E-06 478.2277781739813 18.707 0.49947 17.382 17.222 17.721 -1.3251 21 13 2 0 0 0 1.4304E-05 2 2811 2811;2815 137.42 72.189 1 1897700 35607 5612 23975 23990 35035;35036 35035 -0.038368703842706964 QEIATVVVP 9 Unmodified _QEIATVVVP_ 0 0 0 ENSG00000139233|ENST00000266604|LLPH ENSG00000139233|ENST00000266604|LLPH ENSG00000139233|ENST00000266604|LLPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72271728515625 2 478.276575 954.538597 -0.079625 -3.8083E-05 0.13889 6.6426E-05 0.059261 2.8343E-05 478.2766132508623 122.39 0.89265 122.39 121.96 122.85 0 76 25 4 0 0 0 0.0045467 6 24107 24064;24107;24114;24167;24172;24185 114.65 53.882 1 16013000 35608 4232 23976 23991 35037;35038;35039;35040;35041;35042 35038 0.059509382117198584 QEIATVVVP 9 Unmodified _QEIATVVVP_ 0 0 0 ENSG00000139233|ENST00000266604|LLPH ENSG00000139233|ENST00000266604|LLPH ENSG00000139233|ENST00000266604|LLPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7396240234375 2 478.276575 954.538597 0.097961 4.6852E-05 -0.14919 -7.1353E-05 -0.051228 -2.4501E-05 478.27651283550955 126.9 0.9426 122.28 121.8 122.74 -4.6172 90 26 5 0 0 0 0.00081323 3 25031 25031;25032;25041 114.65 37.85 1 17538000 35609 4232 23976 23991 35043;35044;35045 35043 0.059509382117198584 QEIATVVVP 9 Unmodified _QEIATVVVP_ 0 0 0 ENSG00000139233|ENST00000266604|LLPH ENSG00000139233|ENST00000266604|LLPH ENSG00000139233|ENST00000266604|LLPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.739990234375 2 478.276575 954.538597 0.20974 0.00010031 -0.13738 -6.5707E-05 0.07236 3.4608E-05 478.27648626847827 127.2 0.9209 122.41 121.96 122.88 -4.7959 78 25 4 0 0 0 0.010532 4 24447 24343;24369;24397;24447 103.35 36.686 1 16736000 35610 4232 23976 23991 35046;35047;35048;35049 35049 0.059509382117198584 QEIATVVVP 9 Unmodified _QEIATVVVP_ 0 0 0 ENSG00000139233|ENST00000266604|LLPH ENSG00000139233|ENST00000266604|LLPH ENSG00000139233|ENST00000266604|LLPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7274169921875 2 478.276575 954.538597 0.17164 8.2093E-05 -0.42556 -0.00020354 -0.25392 -0.00012144 478.2765187253336 127.06 1.4807 122.36 121.94 123.42 -4.6998 86 41 3 0 0 0 0.15889 1 24521 24521 26.995 20.407 1 15396000 35611 4232 23976 23991 35050 35050 0.059509382117198584 QEIDQLRNA 9 Unmodified _QEIDQLRNA_ 0 0 0 PIBF1|p.L495Ifs*10|2|0.29|ENSG00000083535|chr13:72893937-72893938|-/A|frameshift_variant;ENSG00000083535|ENST00000326291|PIBF1 PIBF1|p.L495Ifs*10|2|0.29|ENSG00000083535|chr13:72893937-72893938|-/A|frameshift_variant PIBF1|p.L495Ifs*10|2|0.29|ENSG00000083535|chr13:72893937-72893938|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7822265625 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 49.4 1 46.393 45.893 46.893 -3.0068 0 0 0 0.22519 1 9064 9064 16.149 2.2431 1 35612 1655 23977 23992 35051 35051 0.00718465461204687 QEIEEALVRR 10 Unmodified _QEIEEALVRR_ 0 0 0 ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1;ENST00000393292.7_1_3:128848926-128853725:-|nuORF ENSG00000240682|ENST00000393295|ISY1 ENSG00000240682|ENST00000393295|ISY1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 414.8907470703125 3 414.89821 1241.6728 0.15591 6.4689E-05 -0.19127 -7.9359E-05 -0.03536 -1.4671E-05 414.898085778609 34.816 0.38652 32.564 32.289 32.675 -2.2527 21 10 3 0 0 0 0.36162 1 6119 6119 14.405 4.2548 1 626260 35613 7844 23978 23993 35052 35052 0.061629719664551885 QEIEEALVRR 10 Unmodified _QEIEEALVRR_ 0 0 0 ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1;ENST00000393292.7_1_3:128848926-128853725:-|nuORF ENSG00000240682|ENST00000393295|ISY1 ENSG00000240682|ENST00000393295|ISY1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 414.89821 1241.6728 0.058453 2.4252E-05 -0.23823 -9.8843E-05 -0.17978 -7.4591E-05 414.8981889910912 32.407 0.45364 32.407 32.188 32.642 0 -0.072579 -0.00034047 NaN 14.405 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1015600 35614 7844 23978 23993 0.061629719664551885 QEIEEALVRR 10 Unmodified _QEIEEALVRR_ 0 0 0 ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1;ENST00000393292.7_1_3:128848926-128853725:-|nuORF ENSG00000240682|ENST00000393295|ISY1 ENSG00000240682|ENST00000393295|ISY1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 414.89821 1241.6728 -0.38132 -0.00015821 0.77197 0.00032029 0.39065 0.00016208 414.898390188866 34.798 0.28017 32.481 32.359 32.639 -2.3175 0.001232 0.00091693 NaN 14.405 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 688480 35615 7844 23978 23993 0.061629719664551885 QEIEEALVRR 10 Unmodified _QEIEEALVRR_ 0 0 0 ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1;ENST00000393292.7_1_3:128848926-128853725:-|nuORF ENSG00000240682|ENST00000393295|ISY1 ENSG00000240682|ENST00000393295|ISY1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 414.89821 1241.6728 -0.02817 -1.1688E-05 0.12233 5.0755E-05 0.094161 3.9067E-05 414.8982369649294 34.743 0.41864 32.467 32.274 32.692 -2.2766 -0.012783 0.00010833 NaN 14.405 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 817060 35616 7844 23978 23993 0.061629719664551885 QEIFKNILE 9 Unmodified _QEIFKNILE_ 0 0 0 tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 567.6953125 2 567.313689 1132.61282 0.24988 0.00014176 -0.36093 -0.00020476 -0.11105 -6.3E-05 567.3133424858356 136.86 0.59195 132.02 131.62 132.21 -4.84 25 16 3 0 0 0 0.62921 1 26324 26324 30.637 16.73 1 3066000 35617 25885 23979 23994 35053 35053 0.051822813032458726 QEIFKNILE 9 Unmodified _QEIFKNILE_ 0 0 0 tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 567.313689 1132.61282 -0.10924 -6.1971E-05 0.10231 5.8042E-05 -0.0069257 -3.9291E-06 567.3138633213152 136.47 0.62527 131.84 131.43 132.06 -4.6399 -0.050799 0.0002159 NaN 30.637 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3852200 35618 25885 23979 23994 0.051822813032458726 QEIFKNILE 9 Unmodified _QEIFKNILE_ 0 0 0 tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 567.313689 1132.61282 0.045485 2.5804E-05 -0.13974 -7.9279E-05 -0.094259 -5.3474E-05 567.3135980304187 136.72 0.52884 131.8 131.56 132.09 -4.9216 -0.086122 -5.874E-05 NaN 30.637 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2651500 35619 25885 23979 23994 0.051822813032458726 QEILGLNKEP 10 Unmodified _QEILGLNKEP_ 0 0 0 ENSG00000119614|ENST00000261980|VSX2 ENSG00000119614|ENST00000261980|VSX2 ENSG00000119614|ENST00000261980|VSX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2151184082031 3 380.880156 1139.61864 0.019051 7.2561E-06 0.65605 0.00024988 0.6751 0.00025713 381.214961836217 39.5 0.55707 37.058 36.721 37.278 -2.4419 40 15 4 0 0 0 0.36162 1 7055 7055 14.405 4.2548 1 1793300 35620 3088 23980 23995 35054 35054 0.054413798149198556 QEIRECRLQAQ 11 Unmodified _QEIRECRLQAQ_ 0 0 0 ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2261047363281 3 458.569987 1372.68813 0.019729 9.047E-06 -0.11993 -5.4996E-05 -0.1002 -4.5949E-05 458.5698080964447 56.522 0.63804 53.346 53.045 53.683 -3.1761 40 17 3 0 0 0 0.63394 1 10469 10469 0.0059557 0 1 10159000 35621 4125 23981 23996 35055 35055 0.016695154920171262 QEIRLWQL 8 Unmodified _QEIRLWQL_ 0 0 0 nc|ENSG00000146857|Q7Z7C7|STRA8 nc|ENSG00000146857|Q7Z7C7|STRA8 nc|ENSG00000146857|Q7Z7C7|STRA8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7813720703125 2 543.308741 1084.60293 0.10124 5.5002E-05 -3.4847 -0.0018932 -3.3834 -0.0018382 543.3075469128503 141.11 0.14001 136.12 136.03 136.17 -4.9877 5 3 2 0 0 0 0.58432 1 27165 27165 23.148 1.4018 1 1269700 35622 12372 23982 23997 35056 35056 0.06401138088517655 QEISHLIEP 9 Unmodified _QEISHLIEP_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2822875976562 2 533.282389 1064.55022 -0.13365 -7.1271E-05 -0.013142 -7.0084E-06 -0.14679 -7.828E-05 533.2823404092156 93.601 2.0454 93.601 92.477 94.522 0 182 58 4 0 0 0 2.4079E-13 11 18375 18093;18124;18141;18179;18182;18186;18236;18280;18327;18375;18424 163.04 81.146 1 68958000 35623 4065 23983 23998 35057;35058;35059;35060;35061;35062;35063;35064;35065;35066;35067 35066 0.020531352350417365 QEISHLIEP 9 Unmodified _QEISHLIEP_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2826538085938 2 533.282389 1064.55022 0.11607 6.1899E-05 -0.29865 -0.00015927 -0.18258 -9.7368E-05 533.2822276099546 97.396 2.1933 93.299 92.281 94.474 -4.0978 199 62 4 0 0 0 4.7767E-11 10 19075 18935;18982;18986;19035;19075;19122;19172;19174;19224;19227 155.03 73.136 1 71232000 35624 4065 23983 23998 35068;35069;35070;35071;35072;35073;35074;35075;35076;35077 35072 0.020531352350417365 QEISHLIEP 9 Unmodified _QEISHLIEP_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2825317382812 2 533.282389 1064.55022 0.53429 0.00028493 -0.75392 -0.00040205 -0.21964 -0.00011713 533.2819794295052 97.731 2.3489 93.496 92.231 94.58 -4.2348 212 67 4 0 0 0 1.5193E-11 7 18631 18473;18527;18579;18631;18678;18772;18788 160.52 78.626 1 69160000 35625 4065 23983 23998 35078;35079;35080;35081;35082;35083;35084 35081 0.020531352350417365 QEISHLIEP 9 Unmodified _QEISHLIEP_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2824096679688 2 533.282389 1064.55022 0.055047 2.9355E-05 -0.38666 -0.0002062 -0.33161 -0.00017684 533.2821746204484 97.397 2.6122 93.477 92.023 94.636 -3.9194 213 75 4 0 0 0 1.5193E-11 8 18654 18523;18570;18615;18654;18697;18791;18829;18908 160.52 78.626 1 79282000 35626 4065 23983 23998 35085;35086;35087;35088;35089;35090;35091;35092 35088 0.020531352350417365 QEITSYTA 8 Unmodified _QEITSYTA_ 0 0 0 nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1 nc|ENSG00000039068|P12830-2|CDH1 nc|ENSG00000039068|P12830-2|CDH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2096862792969 2 456.71909 911.423627 -0.10878 -4.9682E-05 0.40827 0.00018646 0.29949 0.00013678 456.7191711577375 82.768 2.2728 79.16 78.05 80.323 -3.6079 159 64 4 0 0 0 8448 1 16117 16117 1.4551 0 1 11181000 35627 1186 23984 23999 35093 35093 -0.035627909900881605 QEKAFFAQL 9 Unmodified _QEKAFFAQL_ 0 0 0 nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF nc|ENSG00000116044|Q16236-3|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27587890625 2 541.287474 1080.5604 0.22681 0.00012277 -0.046816 -2.5341E-05 0.17999 9.7428E-05 541.2872094563569 136.76 0.84668 132.12 131.67 132.52 -4.6399 53 23 3 0 0 0 0.25976 2 26954 26954;27037 17.572 7.4213 1 7186000 35628 2904 23985 24000 35094;35095 35094 0.023337429602634074 QEKAFFAQL 9 Unmodified _QEKAFFAQL_ 0 0 0 nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF nc|ENSG00000116044|Q16236-3|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2603759765625 2 541.287474 1080.5604 0.12563 6.8005E-05 -0.17768 -9.6177E-05 -0.052047 -2.8172E-05 541.2872295151745 136.97 0.69952 132.05 131.67 132.37 -4.9215 51 19 3 0 0 0 0.029716 1 26285 26285 81.89 13.809 1 6431000 35629 2904 23985 24000 35096 35096 0.023337429602634074 QEKAFFAQL 9 Unmodified _QEKAFFAQL_ 0 0 0 nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF nc|ENSG00000116044|Q16236-3|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2694091796875 2 541.287474 1080.5604 0.31711 0.00017165 -0.18392 -9.9556E-05 0.13318 7.2091E-05 541.2872657898442 136.84 0.97598 132 131.69 132.66 -4.84 60 27 3 0 0 0 0.1793 2 26395 26395;26435 39.957 9.1276 1 5378200 35630 2904 23985 24000 35097;35098 35097 0.023337429602634074 QEKEFVQA 8 Unmodified _QEKEFVQA_ 0 0 0 ENST00000467673.5_1_1:39571193-39720158:+|nuORF ENST00000467673.5_1_1:39571193-39720158:+|nuORF ENST00000467673.5_1_1:39571193-39720158:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26348876953125 2 489.748182 977.481811 0.22128 0.00010837 -0.13429 -6.5768E-05 0.086989 4.2603E-05 489.7480804345722 36.03 0.53149 36.03 35.821 36.353 0 32 14 3 0 0 0 0.002247 1 6628 6628 96.285 18.135 1 10262000 35631 10155 23986 24001 35099 35099 -0.007831093448089632 QEKEFVQA 8 Unmodified _QEKEFVQA_ 0 0 0 ENST00000467673.5_1_1:39571193-39720158:+|nuORF ENST00000467673.5_1_1:39571193-39720158:+|nuORF ENST00000467673.5_1_1:39571193-39720158:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.255859375 2 489.748182 977.481811 -0.21551 -0.00010554 0.21434 0.00010497 -0.0011627 -5.6942E-07 489.7482448978773 38.38 0.42431 35.831 35.699 36.123 -2.5491 19 11 2 0 0 0 0.23433 1 7097 7097 42.095 2.1372 1 7007000 35632 10155 23986 24001 35100 35100 -0.007831093448089632 QEKEFVQA 8 Unmodified _QEKEFVQA_ 0 0 0 ENST00000467673.5_1_1:39571193-39720158:+|nuORF ENST00000467673.5_1_1:39571193-39720158:+|nuORF ENST00000467673.5_1_1:39571193-39720158:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2583312988281 2 489.748182 977.481811 -0.055825 -2.734E-05 0.23618 0.00011567 0.18036 8.8329E-05 489.7482522772279 38.314 0.59158 35.909 35.674 36.266 -2.4049 30 16 3 0 0 0 0.58903 1 6827 6827 30.225 1.738 1 3726800 35633 10155 23986 24001 35101 35101 -0.007831093448089632 QEKEQGIE 8 Unmodified _QEKEQGIE_ 0 0 0 REV__nc|ENSG00000068400|Q4V328-4|GRIPAP1 REV__nc|ENSG00000068400|Q4V328-4|GRIPAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24444580078125 2 480.735271 959.45599 0.17141 8.2402E-05 0.35848 0.00017233 0.52988 0.00025473 480.7354197998158 35.603 0.62193 33.35 33.019 33.641 -2.2527 29 17 2 0 0 0 0.5743 1 6323 6323 29.082 8.667 1 1488200 + 35634 14227 23987 24002 35102 35102 -0.02536003587090363 QEKGCHNDY 9 Unmodified _QEKGCHNDY_ 0 0 0 REV__ENSG00000003056|ENST00000000412|M6PR REV__ENSG00000003056|ENST00000000412|M6PR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7891235351562 2 547.222005 1092.42946 0.022625 1.2381E-05 -0.50038 -0.00027382 -0.47776 -0.00026144 547.221539651994 60.608 0.27962 60.608 60.487 60.767 0 10 7 2 0 0 0 0.77734 1 11628 11628 13.906 3.8321 1 1071800 + 35635 13825 23988 24003 35103 35103 -0.11306015750074039 QEKHLIREA 9 Unmodified _QEKHLIREA_ 0 0 0 REV__ENST00000465624.5_1_3:158537406-158546768:+|nuORF REV__ENST00000465624.5_1_3:158537406-158546768:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2124938964844 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 92.692 1 88.767 88.267 89.267 -3.9251 0 0 0 0.23508 1 18155 18155 8.1555 0 1 + 35636 15564 23989 24004 35104 35104 0.05815335111856257 QEKHLIREA 9 Unmodified _QEKHLIREA_ 0 0 0 REV__ENST00000465624.5_1_3:158537406-158546768:+|nuORF REV__ENST00000465624.5_1_3:158537406-158546768:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2126770019531 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 92.95 1 88.806 88.306 89.306 -4.1435 0 0 0 0.19677 1 17712 17712 0.073264 0 1 + 35637 15564 23989 24004 35105 35105 0.05815335111856257 QEKIFIAA 8 Unmodified _QEKIFIAA_ 0 0 0 nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;ENST00000505692.1_1_4:122780107-122782831:-|nuORF;ENST00000502444.1_1_4:122782546-122791468:-|nuORF nc|ENSG00000138686|Q8IWZ6-2|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2266845703125 2 460.26601 918.517468 0.13057 6.0095E-05 0.30727 0.00014143 0.43783 0.00020152 460.26605343503843 87.78 0.9657 87.78 87.327 88.292 0 80 27 4 0 0 0 0.032794 1 17150 17150 128.37 39.462 1 26701000 35638 4200 23990 24005 35106 35106 0.054949729028408 QEKIFIAA 8 Unmodified _QEKIFIAA_ 0 0 0 nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;ENST00000505692.1_1_4:122780107-122782831:-|nuORF;ENST00000502444.1_1_4:122782546-122791468:-|nuORF nc|ENSG00000138686|Q8IWZ6-2|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.26601 918.517468 0.2598 0.00011958 0.19475 8.9636E-05 0.45455 0.00020921 460.2660163315892 91.505 0.92502 87.41 86.917 87.842 -4.0946 -0.11362 -0.00011536 NaN 128.37 79 26 4 NaN NaN NaN NaN 0 NaN NaN 0 23726000 35639 4200 23990 24005 0.054949729028408 QEKIFIAA 8 Unmodified _QEKIFIAA_ 0 0 0 nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;ENST00000505692.1_1_4:122780107-122782831:-|nuORF;ENST00000502444.1_1_4:122782546-122791468:-|nuORF nc|ENSG00000138686|Q8IWZ6-2|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 460.26601 918.517468 0.12982 5.9753E-05 0.25175 0.00011587 0.38157 0.00017562 460.2660346026112 91.294 0.96529 87.486 86.997 87.962 -3.8083 -0.038188 -6.2887E-05 NaN 128.37 81 27 4 NaN NaN NaN NaN 0 NaN NaN 0 18122000 35640 4200 23990 24005 0.054949729028408 QEKLAESL 8 Unmodified _QEKLAESL_ 0 0 0 ENST00000528947.5_2_11:7535100-7569685:+|nuORF ENST00000528947.5_2_11:7535100-7569685:+|nuORF ENST00000528947.5_2_11:7535100-7569685:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2414245605469 2 459.250557 916.486562 -0.12568 -5.7719E-05 0.59802 0.00027464 0.47233 0.00021692 459.2506326741557 91.726 0.68776 87.801 87.509 88.197 -3.9251 38 19 3 0 0 0 0.078324 1 17929 17929 67.344 0 1 1561300 35641 10944 23991 24006 35107 35107 0.024977747979505693 QEKLAESL 8 Unmodified _QEKLAESL_ 0 0 0 ENST00000528947.5_2_11:7535100-7569685:+|nuORF ENST00000528947.5_2_11:7535100-7569685:+|nuORF ENST00000528947.5_2_11:7535100-7569685:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.250557 916.486562 0.23675 0.00010873 0.16976 7.7962E-05 0.40651 0.00018669 459.2504751654486 91.961 0.37718 87.866 87.74 88.117 -4.0946 -0.021565 -0.00017095 NaN 67.344 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1039200 35642 10944 23991 24006 0.024977747979505693 QEKLAESL 8 Unmodified _QEKLAESL_ 0 0 0 ENST00000528947.5_2_11:7535100-7569685:+|nuORF ENST00000528947.5_2_11:7535100-7569685:+|nuORF ENST00000528947.5_2_11:7535100-7569685:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.250557 916.486562 0.11274 5.1777E-05 0.25519 0.0001172 0.36794 0.00016897 459.2505323212406 91.804 0.62473 87.996 87.616 88.241 -3.8083 0.10822 -9.2482E-05 NaN 67.344 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1250100 35643 10944 23991 24006 0.024977747979505693 QEKLHVNYLT 10 Unmodified _QEKLHVNYLT_ 0 0 0 nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B nc|ENSG00000150347|Q14865-2|ARID5B nc|ENSG00000150347|Q14865-2|ARID5B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7681274414062 2 622.83532 1243.65609 NaN NaN NaN NaN NaN NaN NaN 147.16 1 142.05 141.55 142.55 -5.1108 0 0 0 0.22588 1 28471 28471 8.1555 0 1 35644 4823 23992 24007 35108 35108 0.04400471080521129 QEKLNVWVA 9 Unmodified _QEKLNVWVA_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.779052734375 2 543.800749 1085.58694 0.39577 0.00021522 -0.23611 -0.0001284 0.15965 8.682E-05 544.3020757694959 110.13 0.44537 110.13 109.85 110.29 0 21 12 2 0 0 0 0.47592 1 21641 21641 17.572 9.4164 1 2064600 35645 4765 23993 24008 35109 35109 0.04757431851612637 QEKNIFSAF 9 Unmodified _QEKNIFSAF_ 0 0 0 REV__ENST00000430398.2_1_1:73570714-73571443:+|nuORF REV__ENST00000430398.2_1_1:73570714-73571443:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78076171875 2 542.277106 1082.53966 0.023038 1.2493E-05 0.019353 1.0495E-05 0.042391 2.2987E-05 542.2770493977222 50.977 0.73247 47.925 47.574 48.306 -3.0517 62 20 4 0 0 0 0.5059 1 9403 9403 19.257 0 1 13266000 + 35646 21608 23994 24009 35110 35110 0.0016915258061089844 QEKPMEIAP 9 Unmodified _QEKPMEIAP_ 0 0 0 ENSG00000177169|ENST00000321867|ULK1;ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2678833007812 2 521.765517 1041.51648 -0.103 -5.3741E-05 1.0792 0.00056307 0.97616 0.00050932 521.7655725780784 61.415 0.40697 61.415 61.224 61.631 0 15 11 2 0 0 0 0.45972 1 11789 11789 8.1555 5.5243 1 793510 35647 6499 23995 24010 35111 35111 -0.00261609528365625 QEKPMEIAP 9 Unmodified _QEKPMEIAP_ 0 0 0 ENSG00000177169|ENST00000321867|ULK1;ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2669677734375 2 521.765517 1041.51648 -0.19828 -0.00010346 0.81369 0.00042456 0.61541 0.0003211 521.7659264757125 64.331 0.79911 61.334 60.91 61.709 -2.9975 31 22 2 0 0 0 0.11032 1 12458 12458 52.268 10.429 1 1615000 35648 6499 23995 24010 35112 35112 -0.00261609528365625 QEKPMEIAP 9 Unmodified _QEKPMEIAP_ 0 0 0 ENSG00000177169|ENST00000321867|ULK1;ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2670288085938 2 521.765517 1041.51648 0.34305 0.00017899 0.34718 0.00018114 0.69023 0.00036014 521.7654040433986 64.453 0.63126 61.196 60.983 61.614 -3.2567 29 17 2 0 0 0 0.45972 1 12140 12140 10.899 2.7434 1 1077500 35649 6499 23995 24010 35113 35113 -0.00261609528365625 QEKPMEIAP 9 Unmodified _QEKPMEIAP_ 0 0 0 ENSG00000177169|ENST00000321867|ULK1;ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.765517 1041.51648 -0.51341 -0.00026788 1.0916 0.00056956 0.5782 0.00030168 521.7660197367095 64.901 0.55671 61.442 61.089 61.646 -3.4581 0.095569 0.00022825 NaN 52.268 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1670100 35650 6499 23995 24010 -0.00261609528365625 QEKPSEYIA 9 Unmodified _QEKPSEYIA_ 0 0 0 CYP4F3|p.A224T|1|0.2|ENSG00000186529|chr19:15649935-15649935|G/A|missense_variant;nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;CYP4F3|p.F425Lfs*54|1|0.39|ENSG00000186529|chr19:15658512-15658512|T/-|frameshift_variant;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENSG00000171903|ENST00000402119|CYP4F11 CYP4F3|p.A224T|1|0.2|ENSG00000186529|chr19:15649935-15649935|G/A|missense_variant CYP4F3|p.A224T|1|0.2|ENSG00000186529|chr19:15649935-15649935|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.28125 2 532.766571 1063.51859 0.30403 0.00016198 -0.30435 -0.00016215 -0.00032139 -1.7123E-07 532.766373427306 42.096 0.87861 42.096 41.726 42.605 0 65 24 4 0 0 0 0.0017442 3 7893 7838;7884;7893 118.89 65.062 1 15579000 35651 771 23996 24011 35114;35115;35116 35116 -0.010628575189002731 QEKPSEYIA 9 Unmodified _QEKPSEYIA_ 0 0 0 CYP4F3|p.A224T|1|0.2|ENSG00000186529|chr19:15649935-15649935|G/A|missense_variant;nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;CYP4F3|p.F425Lfs*54|1|0.39|ENSG00000186529|chr19:15658512-15658512|T/-|frameshift_variant;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENSG00000171903|ENST00000402119|CYP4F11 CYP4F3|p.A224T|1|0.2|ENSG00000186529|chr19:15649935-15649935|G/A|missense_variant CYP4F3|p.A224T|1|0.2|ENSG00000186529|chr19:15649935-15649935|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.26806640625 2 532.766571 1063.51859 0.057277 3.0515E-05 -0.059277 -3.1581E-05 -0.0019997 -1.0653E-06 532.7665114298496 45.096 0.85612 42.306 41.778 42.635 -2.79 69 23 4 0 0 0 0.00016281 4 8473 8427;8441;8473;8519 122.18 59.607 1 22626000 35652 771 23996 24011 35117;35118;35119;35120 35119 -0.010628575189002731 QEKPSEYIA 9 Unmodified _QEKPSEYIA_ 0 0 0 CYP4F3|p.A224T|1|0.2|ENSG00000186529|chr19:15649935-15649935|G/A|missense_variant;nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;CYP4F3|p.F425Lfs*54|1|0.39|ENSG00000186529|chr19:15658512-15658512|T/-|frameshift_variant;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENSG00000171903|ENST00000402119|CYP4F11 CYP4F3|p.A224T|1|0.2|ENSG00000186529|chr19:15649935-15649935|G/A|missense_variant CYP4F3|p.A224T|1|0.2|ENSG00000186529|chr19:15649935-15649935|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2679443359375 2 532.766571 1063.51859 0.36557 0.00019476 -0.28471 -0.00015168 0.080861 4.308E-05 532.7663402177026 45.074 0.95731 42.209 41.735 42.693 -2.8653 72 26 4 0 0 0 0.0022896 2 8160 8160;8195 118.07 61.891 1 17462000 35653 771 23996 24011 35121;35122 35121 -0.010628575189002731 QEKPSEYIA 9 Unmodified _QEKPSEYIA_ 0 0 0 CYP4F3|p.A224T|1|0.2|ENSG00000186529|chr19:15649935-15649935|G/A|missense_variant;nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;CYP4F3|p.F425Lfs*54|1|0.39|ENSG00000186529|chr19:15658512-15658512|T/-|frameshift_variant;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENSG00000171903|ENST00000402119|CYP4F11 CYP4F3|p.A224T|1|0.2|ENSG00000186529|chr19:15649935-15649935|G/A|missense_variant CYP4F3|p.A224T|1|0.2|ENSG00000186529|chr19:15649935-15649935|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2681274414062 2 532.766571 1063.51859 -0.055132 -2.9373E-05 0.075329 4.0133E-05 0.020196 1.076E-05 532.7665571654363 45.012 0.94669 42.264 41.883 42.83 -2.7475 75 26 4 0 0 0 0.0071415 1 8155 8155 110.67 50.601 1 18749000 35654 771 23996 24011 35123 35123 -0.010628575189002731 QEKQLSVKWMQ 11 Unmodified _QEKQLSVKWMQ_ 0 0 0 REV__TSC1|p.L910Wfs*21|1|0.36|ENSG00000165699|chr9:132897507-132897507|A/-|frameshift_variant REV__TSC1|p.L910Wfs*21|1|0.36|ENSG00000165699|chr9:132897507-132897507|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 702.520751953125 2 702.868837 1403.72312 NaN NaN NaN NaN NaN NaN NaN 56.428 1 53.238 52.738 53.738 -3.1895 0 0 0 0.23379 1 10459 10459 5.2969 0 1 + 35655 17796 23997 24012 35124 35124 0.03740758299954905 QEKRQGPH 8 Unmodified _QEKRQGPH_ 0 0 0 REV__ENST00000550179.1_1_12:56524667-56524898:+|nuORF REV__ENST00000550179.1_1_12:56524667-56524898:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2552490234375 2 490.25704 978.499526 NaN NaN NaN NaN NaN NaN NaN 47.12 1 44.177 43.677 44.677 -2.9421 0 0 0 0.21323 1 8581 8581 14.582 2.0501 1 + 35656 16531 23998 24013 35125 35125 0.009416507007131258 QEKRTTRK 8 Unmodified _QEKRTTRK_ 0 0 0 REV__ENST00000378952.7_1_10:12209703-12222485:-|nuORF REV__ENST00000378952.7_1_10:12209703-12222485:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6994018554688 2 523.806897 1045.59924 NaN NaN NaN NaN NaN NaN NaN 63.064 1 63.064 62.564 63.564 0 0 0 0 0.21486 1 12118 12118 9.3474 0.75416 1 + 35657 17784 23999 24014 35126 35126 0.07826468314647173 QEKSEIRLYRQ 11 Unmodified _QEKSEIRLYRQ_ 0 0 0 PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;nc|ENSG00000133401|O15018-2|PDZD2 PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 725.78173828125 2 725.394064 1448.77358 0.88918 0.00064501 -0.086176 -6.2511E-05 0.80301 0.0005825 725.3955446073683 162.87 0.20647 158.08 157.89 158.1 -4.7898 7 5 2 0 0 0 0.96036 1 32414 32414 2.4985 0 1 4416000 35658 3801 24000 24015 35127 35127 0.06714003949332437 QEKSRAEPRLW 11 Unmodified _QEKSRAEPRLW_ 0 0 0 REV__nc|ENSG00000152467|Q8NBB4-2|ZSCAN1 REV__nc|ENSG00000152467|Q8NBB4-2|ZSCAN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 700.3743896484375 2 700.375675 1398.7368 NaN NaN NaN NaN NaN NaN NaN 175.22 1 170.33 169.83 170.83 -4.8916 0 0 0 0.22632 1 34922 34922 0.026206 0.024825 1 + 35659 17112 24001 24016 35128 35128 0.053377521234097 QEKVIALLFFF 11 Unmodified _QEKVIALLFFF_ 0 0 0 ENST00000468376.2_1_20:45867286-45947776:-|nuORF ENST00000468376.2_1_20:45867286-45947776:-|nuORF ENST00000468376.2_1_20:45867286-45947776:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 677.8899536132812 2 677.892106 1353.76966 NaN NaN NaN NaN NaN NaN NaN 168.75 1 163.88 163.38 164.38 -4.873 0 0 0 0.22632 1 33290 33290 0.58532 0 1 35660 10167 24002 24017 35129 35129 0.10692566193529274 QEKWSPSPS 9 Unmodified _QEKWSPSPS_ 0 0 0 ENST00000557258.5_1_14:89629283-89817036:-|nuORF ENST00000557258.5_1_14:89629283-89817036:-|nuORF ENST00000557258.5_1_14:89629283-89817036:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6887817382812 2 523.251089 1044.48762 -0.29844 -0.00015616 0.31647 0.00016559 0.018024 9.4309E-06 523.2512294490923 31.066 0.56064 29.039 28.671 29.232 -2.0264 23 15 2 0 0 0 0.69192 1 5293 5293 10.074 10.074 1 976790 35661 11251 24003 24018 35130 35130 -0.032840108331583906 QEKYLQGVT 9 Unmodified _QEKYLQGVT_ 0 0 0 REV__nc|ENSG00000133392|P35749-4|MYH11;REV__ENSG00000100345|ENST00000216181|MYH9 REV__nc|ENSG00000133392|P35749-4|MYH11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2821655273438 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 45.207 1 42.417 41.917 42.917 -2.79 0 0 0 0.11195 1 8509 8509 36.127 2.0246 1 + 35662 16164;14695 24004 24019 35131 35131 0.020531352350417365 QEKYLQGVT 9 Unmodified _QEKYLQGVT_ 0 0 0 REV__nc|ENSG00000133392|P35749-4|MYH11;REV__ENSG00000100345|ENST00000216181|MYH9 REV__nc|ENSG00000133392|P35749-4|MYH11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2813110351562 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 45.028 1 42.281 41.781 42.781 -2.7475 0 0 0 0.13613 1 8163 8163 32.305 2.0807 1 + 35663 16164;14695 24004 24019 35132 35132 0.020531352350417365 QELEANKAAI 10 Unmodified _QELEANKAAI_ 0 0 0 REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18 REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7928466796875 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 141.15 1 136.16 135.66 136.66 -4.9877 0 0 0 0.21796 1 27176 27176 24.991 0.97039 1 + 35664 15691 24005 24020 35133 35133 0.0323252026373666 QELEECDI 8 Unmodified _QELEECDI_ 0 0 0 nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;NUDCD1|p.F499Lfs*41|1|0.33|ENSG00000120526|chr8:109243264-109243264|A/-|frameshift_variant;nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1 nc|ENSG00000120526|Q96RS6-3|NUDCD1 nc|ENSG00000120526|Q96RS6-3|NUDCD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2584228515625 2 489.707865 977.401177 -0.2619 -0.00012825 0.12604 6.1724E-05 -0.13586 -6.6531E-05 489.70789576953007 84.603 0.34822 80.891 80.594 80.942 -3.7117 11 9 2 0 0 0 0.97173 1 16120 16120 7.9102 2.6795 1 811710 35665 3139 24006 24021 35134 35134 -0.08842758450020938 QELGRVIHL 9 Unmodified _QELGRVIHL_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2864379882812 2 532.81419 1063.61383 -0.061944 -3.3005E-05 0.80713 0.00043005 0.74519 0.00039705 533.3165512115951 70.996 0.8617 70.996 70.521 71.382 0 32 24 2 0 0 0 0.6329 1 13815 13815 10.824 0 1 2678100 35666 1111 24007 24022 35135 35135 0.0845654046281652 QELIRSSF 8 Unmodified _QELIRSSF_ 0 0 0 ENST00000555139.1_1_14:74961475-74961700:+|nuORF;ENST00000298818.12_1_14:74961032-74961700:+|nuORF;ENSG00000165898|ENST00000556816|ISCA2 ENST00000555139.1_1_14:74961475-74961700:+|nuORF ENST00000555139.1_1_14:74961475-74961700:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2717590332031 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 138.5 1 133.86 133.36 134.36 -4.6413 0 0 0 0.16002 1 27346 27346 36.044 3.7387 1 35667 5671 24008 24023 35136 35136 0.02332883409144415 QELIRSSF 8 Unmodified _QELIRSSF_ 0 0 0 ENST00000555139.1_1_14:74961475-74961700:+|nuORF;ENST00000298818.12_1_14:74961032-74961700:+|nuORF;ENSG00000165898|ENST00000556816|ISCA2 ENST00000555139.1_1_14:74961475-74961700:+|nuORF ENST00000555139.1_1_14:74961475-74961700:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2635192871094 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 138.56 1 133.61 133.11 134.11 -4.952 0 0 0 0.10184 1 26645 26645 44.407 4.4497 1 35668 5671 24008 24023 35137 35137 0.02332883409144415 QELKLIGEY 9 Unmodified _QELKLIGEY_ 0 0 0 ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77685546875 2 546.800414 1091.58628 0.47806 0.00026141 0.39937 0.00021838 0.87744 0.00047978 546.8001278597562 119.91 0.7003 115.39 114.98 115.68 -4.5221 55 19 4 0 0 0 0.35443 2 23602 23596;23602 28.487 15.955 1 10815000 35669 6107 24009 24024 35138;35139 35139 0.04414592411922058 QELKLIGEY 9 Unmodified _QELKLIGEY_ 0 0 0 ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7781982421875 2 546.800414 1091.58628 0.61237 0.00033484 0.90991 0.00049754 1.5223 0.00083238 546.8001278011925 120.01 0.74525 115.37 114.95 115.69 -4.645 61 20 4 0 0 0 0.039785 5 23035 22982;22990;23032;23035;23044 75.761 28.379 1 9199500 35670 6107 24009 24024 35140;35141;35142;35143;35144 35143 0.04414592411922058 QELKLIGEY 9 Unmodified _QELKLIGEY_ 0 0 0 ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.776611328125 2 546.800414 1091.58628 0.46139 0.00025229 0.34864 0.00019064 0.81003 0.00044293 546.8002491015992 119.79 0.65623 115.32 115.02 115.68 -4.467 47 18 3 0 0 0 0.069179 2 23087 23087;23090 38.559 23.948 1 10314000 35671 6107 24009 24024 35145;35146 35145 0.04414592411922058 QELKLIGEY 9 Unmodified _QELKLIGEY_ 0 0 0 ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.800414 1091.58628 0.31827 0.00017403 -0.069042 -3.7752E-05 0.24923 0.00013628 546.8002154196893 115.48 0.60196 115.48 115.17 115.77 0 0.093933 -0.00039328 NaN 75.761 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 8276000 35672 6107 24009 24024 0.04414592411922058 QELKSELLL 9 Unmodified _QELKSELLL_ 0 0 0 REV__NLRP10|p.R280Mfs*19|1|0.08|ENSG00000182261|chr11:7960773-7960774|-/CA|frameshift_variant REV__NLRP10|p.R280Mfs*19|1|0.08|ENSG00000182261|chr11:7960773-7960774|-/CA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 358.53668212890625 3 358.213135 1071.61758 NaN NaN NaN NaN NaN NaN NaN 46.834 1 43.968 43.468 44.468 -2.8666 0 0 0 0.19638 1 8536 8536 0.073264 0 1 + 35673 18770 24010 24025 35147 35147 0.08463165446005405 QELLDPAAAPG 11 Unmodified _QELLDPAAAPG_ 0 0 0 ENST00000340622.7_1_7:149191298-149191475:-|nuORF ENST00000340622.7_1_7:149191298-149191475:-|nuORF ENST00000340622.7_1_7:149191298-149191475:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27978515625 2 541.279846 1080.54514 0.45924 0.00024858 -0.049747 -2.6927E-05 0.40949 0.00022165 541.2797561974718 31.799 0.59872 29.568 29.409 30.008 -2.2305 20 16 2 0 0 0 0.42348 1 5771 5771 27.629 0.74515 1 583730 35674 8850 24011 24026 35148 35148 0.008088313724101681 QELLDPAAAPG 11 Unmodified _QELLDPAAAPG_ 0 0 0 ENST00000340622.7_1_7:149191298-149191475:-|nuORF ENST00000340622.7_1_7:149191298-149191475:-|nuORF ENST00000340622.7_1_7:149191298-149191475:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.279846 1080.54514 0.45924 0.00024858 -0.049747 -2.6927E-05 0.40949 0.00022165 541.2797561974718 31.799 0.59872 29.568 29.409 30.008 -2.2305 -0.014436 -0.00014876 NaN 27.629 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 583730 35675 8850 24011 24026 0.008088313724101681 QELLDREAL 9 Unmodified _QELLDREAL_ 0 0 0 ENSG00000122547|ENST00000242108|EEPD1 ENSG00000122547|ENST00000242108|EEPD1 ENSG00000122547|ENST00000242108|EEPD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7936401367188 2 543.793121 1085.57169 0.38128 0.00020733 -0.68931 -0.00037484 -0.30803 -0.00016751 543.7933586261337 122.81 0.60631 118.22 117.88 118.48 -4.5926 27 16 3 0 0 0 0.27986 1 23649 23649 32.786 1.5173 1 1189400 35676 3230 24012 24027 35149 35149 0.032325202637593975 QELLKRRKLRK 11 Unmodified _QELLKRRKLRK_ 0 0 0 SEC62|p.D144Mfs*58|1|0.33|ENSG00000008952|chr3:169982876-169982876|A/-|frameshift_variant SEC62|p.D144Mfs*58|1|0.33|ENSG00000008952|chr3:169982876-169982876|A/-|frameshift_variant SEC62|p.D144Mfs*58|1|0.33|ENSG00000008952|chr3:169982876-169982876|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2649841308594 3 489.991326 1466.95215 NaN NaN NaN NaN NaN NaN NaN 117.23 1 117.23 116.73 117.73 0 0 0 0 0.23698 1 23090 23090 0.36667 0.27183 1 35677 25652 24013 24028 35150 35150 0.2373513837885639 QELMEKAI 8 Unmodified _QELMEKAI_ 0 0 0 TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant;TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant;ENSG00000100154|ENST00000397906|TTC28;TTC28|p.V1305Wfs*29|1|0.31|ENSG00000100154|chr22:28094099-28094099|C/-|frameshift_variant;TTC28|p.D729Rfs*10|1|0.19|ENSG00000100154|chr22:28107660-28107661|-/T|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2550354003906 2 481.254785 960.495018 0.028953 1.3934E-05 -2.5789 -0.0012411 -2.55 -0.0012272 481.25356262062274 24.184 0.64841 24.184 23.827 24.475 0 29 18 2 0 0 0 0.69887 1 4187 4187 14.582 0 1 1849200 35678 1934 24014 24029 35151 35151 0.01319005442917387 QELNQLAT 8 Unmodified _QELNQLAT_ 0 0 0 REV__nc|ENSG00000077150|Q00653-4|NFKB2 REV__nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2412414550781 2 458.740357 915.46616 -0.07784 -3.5708E-05 -1.4881 -0.00068265 -1.5659 -0.00071836 458.74050534733146 40.887 1.0159 38.347 37.815 38.831 -2.5398 81 28 4 0 0 0 0.70344 1 7375 7375 13.906 1.6654 1 6848500 + 35679 14360 24015 24030 35152 35152 0.005046041381433497 QELPGLPAP 9 Unmodified _QELPGLPAP_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5254821777344 2 461.255643 920.496732 -0.079908 -3.6858E-05 0.30184 0.00013923 0.22194 0.00010237 461.2557299445656 130.3 1.2756 125.66 125.01 126.28 -4.6359 90 35 3 0 0 0 0.00014526 1 25725 25725 123.45 52.317 1 14051000 35680 5189 24016 24031 35153 35153 0.03330382523188291 QELPGLPAP 9 Unmodified _QELPGLPAP_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5395812988281 2 461.255643 920.496732 -0.015943 -7.354E-06 0.24229 0.00011176 0.22635 0.0001044 461.2556798898263 130.46 1.2946 125.62 125.01 126.3 -4.8355 92 36 3 0 0 0 0.0083817 2 25136 25136;25178 108 53.223 1 11636000 35681 5189 24016 24031 35154;35155 35154 0.03330382523188291 QELPGLPAP 9 Unmodified _QELPGLPAP_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5403747558594 2 461.255643 920.496732 0.17201 7.9342E-05 0.069684 3.2142E-05 0.2417 0.00011148 461.2556191182883 130.31 1.4275 125.54 124.86 126.29 -4.7725 106 40 4 0 0 0 0.00014526 1 25147 25147 123.45 45.301 1 13653000 35682 5189 24016 24031 35156 35156 0.03330382523188291 QELPGLPAP 9 Unmodified _QELPGLPAP_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.255643 920.496732 0.1995 9.2019E-05 0.046859 2.1614E-05 0.24636 0.00011363 461.25559439202505 125.45 1.1363 125.45 124.83 125.96 0 -0.11711 -0.00011522 NaN 123.45 80 31 3 NaN NaN NaN NaN 0 NaN NaN 0 12012000 35683 5189 24016 24031 0.03330382523188291 QELPLRLLS 9 Unmodified _QELPLRLLS_ 0 0 0 REV__ENST00000498157.1_1_1:109815480-109816293:+|nuORF REV__ENST00000498157.1_1_1:109815480-109816293:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5538635253906 3 356.885241 1067.63389 -0.18215 -6.5006E-05 0.28034 0.00010005 0.098194 3.5044E-05 356.88529659779766 84.56 0.73462 84.56 84.208 84.942 0 51 20 3 0 0 0 0.6797 1 16547 16547 7.609 0 1 8975500 + 35684 13364 24017 24032 35157 35157 0.10278291402755713 QELQDVAA 8 Unmodified _QELQDVAA_ 0 0 0 ENSG00000085741|ENST00000322563|WNT11 ENSG00000085741|ENST00000322563|WNT11 ENSG00000085741|ENST00000322563|WNT11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2195739746094 2 437.219257 872.423961 0.10578 4.6249E-05 -0.085915 -3.7564E-05 0.019865 8.6852E-06 437.21922158631816 35.655 1.2131 33.402 33.09 34.303 -2.2527 74 34 3 0 0 0 8448 1 6257 6257 9.544 0 1 3794300 35685 1681 24018 24033 35158 35158 -0.017353712702515622 QELQGIRQA 9 Unmodified _QELQGIRQA_ 0 0 0 ENST00000526246.5_1_11:66099749-66102792:-|nuORF;nc|ENSG00000174791|Q13671-2|RIN1;ENSG00000174791|ENST00000311320|RIN1 ENST00000526246.5_1_11:66099749-66102792:-|nuORF ENST00000526246.5_1_11:66099749-66102792:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2750854492188 2 521.78563 1041.55671 -0.45985 -0.00023994 0.89191 0.00046539 0.43207 0.00022545 521.7860759479493 40.566 0.38442 37.931 37.764 38.148 -2.6348 18 10 2 0 0 0 0.015957 1 7585 7585 96.367 16.77 1 2716400 35686 6371 24019 24034 35159 35159 0.037590731864384 QELQGIRQA 9 Unmodified _QELQGIRQA_ 0 0 0 ENST00000526246.5_1_11:66099749-66102792:-|nuORF;nc|ENSG00000174791|Q13671-2|RIN1;ENSG00000174791|ENST00000311320|RIN1 ENST00000526246.5_1_11:66099749-66102792:-|nuORF ENST00000526246.5_1_11:66099749-66102792:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2718505859375 2 521.78563 1041.55671 0.14553 7.5936E-05 -0.071344 -3.7226E-05 0.074187 3.871E-05 521.7856467438063 40.454 0.46156 37.964 37.721 38.182 -2.4896 29 12 3 0 0 0 0.019708 2 7252 7252;7265 92.653 7.3813 1 3896000 35687 6371 24019 24034 35160;35161 35160 0.037590731864384 QELQGIRQA 9 Unmodified _QELQGIRQA_ 0 0 0 ENST00000526246.5_1_11:66099749-66102792:-|nuORF;nc|ENSG00000174791|Q13671-2|RIN1;ENSG00000174791|ENST00000311320|RIN1 ENST00000526246.5_1_11:66099749-66102792:-|nuORF ENST00000526246.5_1_11:66099749-66102792:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.78563 1041.55671 -0.73997 -0.00038611 0.99087 0.00051702 0.2509 0.00013092 521.7861631159424 40.556 0.56936 38.016 37.604 38.173 -2.5398 0.045774 0.00042097 NaN 96.367 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4166900 35688 6371 24019 24034 0.037590731864384 QELQLYGHI 9 Unmodified _QELQLYGHI_ 0 0 0 nc|ENSG00000159650|Q96N76-2|UROC1;ENSG00000159650|ENST00000290868|UROC1;UROC1|p.K307Rfs*77|1|0.35|ENSG00000159650|chr3:126501263-126501263|T/-|frameshift_variant nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 551.06884765625 2 550.790381 1099.56621 0.1304 7.1821E-05 1.0395 0.00057254 1.1699 0.00064436 550.7903193109466 144.96 0.48282 139.89 139.49 139.97 -5.0671 15 13 2 0 0 0 0.74655 1 27904 27904 15.847 0 1 6278700 35689 12402 24020 24035 35162 35162 0.02040841471944077 QELQLYGHI 9 Unmodified _QELQLYGHI_ 0 0 0 nc|ENSG00000159650|Q96N76-2|UROC1;ENSG00000159650|ENST00000290868|UROC1;UROC1|p.K307Rfs*77|1|0.35|ENSG00000159650|chr3:126501263-126501263|T/-|frameshift_variant nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 550.790381 1099.56621 0.22206 0.00012231 -0.1209 -6.6591E-05 0.10116 5.5717E-05 550.790490537746 144.23 0.35291 139.56 139.43 139.78 -4.6694 -0.16604 -0.00022228 NaN 15.847 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1743800 35690 12402 24020 24035 0.02040841471944077 QELQRKKTKRE 11 Unmodified _QELQRKKTKRE_ 0 0 0 REV__SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant REV__SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.771728515625 3 481.951196 1442.83176 0.084806 4.0872E-05 1.0036 0.00048368 1.0884 0.00052455 481.95195469104146 129.45 0.42838 124.71 124.46 124.89 -4.7408 14 11 2 0 0 0 0.81043 1 24890 24890 2.2527 0.16876 1 603810 + 35691 19475 24021 24036 35163 35163 0.12805685594594252 QELREAQLY 9 Unmodified _QELREAQLY_ 0 0 0 nc|ENSG00000204713|P14373-2|TRIM27;TRIM27|p.E352Rfs*24|1|0.35|ENSG00000204713|chr6:28904559-28904559|G/-|frameshift_variant;ENSG00000204713|ENST00000377199|TRIM27 nc|ENSG00000204713|P14373-2|TRIM27 nc|ENSG00000204713|P14373-2|TRIM27 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.336181640625 2 575.29857 1148.58259 0.01946 1.1196E-05 -0.10564 -6.0777E-05 -0.086183 -4.9581E-05 575.2985188039759 61.559 0.83476 58.598 58.14 58.974 -2.9614 82 23 5 0 0 0 0.44932 1 11849 11849 22.736 1.1461 1 86247000 35692 7608 24022 24037 35164 35164 0.014239226380595937 QELRFFDPV 9 Unmodified _QELRFFDPV_ 0 0 0 REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3132934570312 2 575.798206 1149.58186 0.46447 0.00026744 -0.030363 -1.7483E-05 0.43411 0.00024996 575.7980366365607 117.26 0.72692 112.68 112.22 112.95 -4.5815 27 20 2 0 0 0 0.65387 1 22467 22467 9.3831 0 1 2559600 + 35693 14073 24023 24038 35165 35165 0.013051279889850775 QELRKLMRRK 10 Unmodified _QELRKLMRRK_ 0 0 0 REV__ENSG00000108592|ENST00000427159|FTSJ3 REV__ENSG00000108592|ENST00000427159|FTSJ3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7544860839844 3 453.278479 1356.81361 -0.73469 -0.00033302 1.1407 0.00051707 0.40604 0.00018405 453.27900939785167 15.108 0.17398 13.994 13.887 14.061 -1.1142 6 4 2 0 0 0 0.76625 1 2295 2295 0.62683 0.21856 1 964890 + 35694 15132 24024 24039 35166 35166 0.14947272138874723 QELRLASY 8 Unmodified _QELRLASY_ 0 0 0 EVC2|p.A1129V|1|0.13|ENSG00000173040|chr4:5568615-5568615|G/A|missense_variant;nc|ENSG00000173040|Q86UK5-2|EVC2;nc|ENSG00000173040|Q86UK5-3|EVC2;EVC2|p.L1252Gfs*12|1|0.09|ENSG00000173040|chr4:5563020-5563021|AG/-|frameshift_variant;ENSG00000173040|ENST00000344408|EVC2 EVC2|p.A1129V|1|0.13|ENSG00000173040|chr4:5568615-5568615|G/A|missense_variant EVC2|p.A1129V|1|0.13|ENSG00000173040|chr4:5568615-5568615|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2642822265625 2 490.263999 978.513445 0.096846 4.748E-05 -0.12904 -6.3264E-05 -0.032194 -1.5784E-05 490.2640044804408 83.369 0.73692 79.761 79.413 80.15 -3.6079 31 20 2 0 0 0 0.36038 1 16339 16339 34.102 3.8776 1 1768800 35695 6260 24025 24040 35167 35167 0.023328834091330464 QELSPSHEGV 10 Unmodified _QELSPSHEGV_ 0 0 0 REV__ENST00000498678.5_1_17:46651246-46667593:-|nuORF REV__ENST00000498678.5_1_17:46651246-46667593:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2654418945312 2 541.759278 1081.504 0.035318 1.9134E-05 0.67222 0.00036418 0.70754 0.00038332 541.75961628995 52.773 1.1447 49.678 49.094 50.239 -3.0954 93 32 4 0 0 0 0.84281 1 9631 9631 19.257 10.512 1 43880000 + 35696 22419 24026 24041 35168 35168 -0.033489296670495605 QELVKNHKK 9 Unmodified _QELVKNHKK_ 0 0 0 REV__nc|ENSG00000141627|Q7RTS9|DYM REV__nc|ENSG00000141627|Q7RTS9|DYM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21337890625 3 375.224257 1122.65094 NaN NaN NaN NaN NaN NaN NaN 34.14 1 31.822 31.322 32.322 -2.3175 0 0 0 0.19677 1 6263 6263 0.029283 0 1 + 35697 16646 24027 24042 35169 35169 0.09452212008568495 QELYDVYCF 9 Unmodified _QELYDVYCF_ 0 0 0 ENSG00000130287|ENST00000252575|NCAN;NCAN|p.M504Wfs*14|1|0.14|ENSG00000130287|chr19:19226917-19226917|G/-|frameshift_variant ENSG00000130287|ENST00000252575|NCAN ENSG00000130287|ENST00000252575|NCAN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.277099609375 2 590.254982 1178.49541 NaN NaN NaN NaN NaN NaN NaN 126.2 1 126.2 125.7 126.7 0 0 0 0 0.23508 1 24904 24904 6.7232 0 1 35698 3596 24028 24043 35170 35170 -0.08669619627903558 QELYQVSI 8 Unmodified _QELYQVSI_ 0 0 0 REV__tr|U7ST75|U7ST75_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01247PE=4SV=1 REV__tr|U7ST75|U7ST75_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01247PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26348876953125 2 490.258382 978.502212 0.22479 0.00011021 0.27142 0.00013306 0.49621 0.00024327 490.2583196998363 36.158 0.42814 36.158 35.925 36.353 0 15 11 2 0 0 0 0.23433 1 6628 6628 42.095 2.1372 1 2811200 + 35699 25085 24029 24044 35171 35171 0.012100613150096251 QEMDAQTIA 9 Unmodified _QEMDAQTIA_ 0 0 0 ENST00000493134.1_1_3:44840780-44854740:+|nuORF;nc|ENSG00000163808|Q9NS87-4|KIF15;KIF15|p.K1251Nfs*11|1|0.08|ENSG00000163808|chr3:44848041-44848042|-/TTTCAAATTC|frameshift_variant;nc|ENSG00000163808|Q9NS87-2|KIF15;ENSG00000163808|ENST00000326047|KIF15 ENST00000493134.1_1_3:44840780-44854740:+|nuORF ENST00000493134.1_1_3:44840780-44854740:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 503.72637939453125 2 503.729132 1005.44371 NaN NaN NaN NaN NaN NaN NaN 54.832 1 51.948 51.448 52.448 -2.8837 0 0 0 0.19687 1 10476 10476 8.1555 0 1 35700 5468 24030 24045 35172 35172 -0.05879363321787423 QEMEECPI 8 Unmodified _QEMEECPI_ 0 0 0 ENSG00000178691|ENST00000322652|SUZ12 ENSG00000178691|ENST00000322652|SUZ12 ENSG00000178691|ENST00000322652|SUZ12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2640686035156 2 489.698986 977.383418 -0.13111 -6.4204E-05 1.3352 0.00065387 1.2041 0.00058966 489.699720193107 98.462 0.42958 94.506 94.267 94.696 -3.9564 14 12 2 0 0 0 1.0147 1 18902 18902 9.3474 4.1168 1 572740 35701 6587 24031 24046 35173 35173 -0.10617796976521277 QEMNRLFGA 9 Oxidation (M) _QEM(Oxidation (M))NRLFGA_ QEM(1)NRLFGA QEM(76)NRLFGA 0 0 1 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2588500976562 2 541.258391 1080.50223 -0.016922 -9.1594E-06 -0.28971 -0.00015681 -0.30663 -0.00016597 541.25825909726 64.052 0.52228 64.052 63.749 64.271 0 23 14 2 0 0 0 0.039785 1 12291 12291 75.761 39.255 1 1650000 35702 5512 24032 24047 35174 35174 86 -0.034802619566335125 QEMNRLFGA 9 Oxidation (M) _QEM(Oxidation (M))NRLFGA_ QEM(1)NRLFGA QEM(100)NRLFGA 0 0 1 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2586669921875 2 541.258391 1080.50223 0.17887 9.6814E-05 0.20225 0.00010947 0.38112 0.00020628 541.2583598350269 67.01 0.52774 63.901 63.685 64.213 -3.1086 25 14 2 0 0 0 0.012534 1 12971 12971 99.755 55.983 1 2767400 35703 5512 24032 24047 35175 35175 86 -0.034802619566335125 QEMNRLFGA 9 Oxidation (M) _QEM(Oxidation (M))NRLFGA_ QEM(1)NRLFGA QEM(63)NRLFGA 0 0 1 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2582397460938 2 541.258391 1080.50223 0.40378 0.00021855 -0.10778 -5.8338E-05 0.296 0.00016021 541.2583496698107 67.224 0.69662 63.897 63.476 64.172 -3.3268 28 19 2 0 0 0 0.07738 2 12685 12640;12685 62.573 34.944 1 1800400 35704 5512 24032 24047 35176;35177 35177 86 -0.034802619566335125 QEMNRLFGA 9 Unmodified _QEMNRLFGA_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26123046875 2 533.260933 1064.50731 -0.086791 -4.6282E-05 0.47121 0.00025128 0.38442 0.000205 533.2612102571285 91.734 0.80428 91.734 91.288 92.092 0 45 22 3 0 0 0 8.0306E-08 4 17922 17852;17871;17922;17968 149.91 89.84 1 4903000 35705 5512 24032 24048 35178;35179;35180;35181 35180 -0.022359580940246815 QEMNRLFGA 9 Unmodified _QEMNRLFGA_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2609252929688 2 533.260933 1064.50731 0.12184 6.4974E-05 0.26033 0.00013882 0.38217 0.0002038 533.2610491308737 95.685 0.82083 91.636 91.238 92.059 -4.0496 50 23 3 0 0 0 5.2769E-24 5 18758 18683;18711;18758;18789;18801 176.84 107.73 1 8275200 35706 5512 24032 24048 35182;35183;35184;35185;35186 35184 -0.022359580940246815 QEMNRLFGA 9 Unmodified _QEMNRLFGA_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2608032226562 2 533.260933 1064.50731 0.50335 0.00026842 -0.047266 -2.5205E-05 0.45609 0.00024321 533.2609394051614 95.791 0.8875 91.6 91.245 92.133 -4.1912 50 25 3 0 0 0 5.2769E-24 2 18259 18259;18306 176.84 107.73 1 7229900 35707 5512 24032 24048 35187;35188 35187 -0.022359580940246815 QEMNRLFGA 9 Unmodified _QEMNRLFGA_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26123046875 2 533.260933 1064.50731 0.046466 2.4778E-05 0.28345 0.00015115 0.32992 0.00017593 533.2610803424251 95.445 0.8682 91.564 91.194 92.062 -3.881 52 24 3 0 0 0 1.588E-56 4 18314 18274;18314;18357;18371 206.75 137.64 1 6391800 35708 5512 24032 24048 35189;35190;35191;35192 35190 -0.022359580940246815 QEMVDELQDP 10 Unmodified _QEMVDELQDP_ 0 0 0 NOMO3|p.G747D|1|0.26|ENSG00000103226|chr16:16273874-16273874|G/A|missense_variant;NOMO2|p.G747D|1|0.15|ENSG00000185164|chr16:18520798-18520798|C/T|missense_variant NOMO3|p.G747D|1|0.26|ENSG00000103226|chr16:16273874-16273874|G/A|missense_variant NOMO3|p.G747D|1|0.26|ENSG00000103226|chr16:16273874-16273874|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3012084960938 2 602.263536 1202.51252 NaN NaN NaN NaN NaN NaN NaN 48.273 1 45.331 44.831 45.831 -2.9421 0 0 0 0.22527 1 8811 8811 21.537 5.3879 1 35709 12699 24033 24049 35193 35193 -0.08063743812749635 QEMVDELQDP 10 Unmodified _QEMVDELQDP_ 0 0 0 NOMO3|p.G747D|1|0.26|ENSG00000103226|chr16:16273874-16273874|G/A|missense_variant;NOMO2|p.G747D|1|0.15|ENSG00000185164|chr16:18520798-18520798|C/T|missense_variant NOMO3|p.G747D|1|0.26|ENSG00000103226|chr16:16273874-16273874|G/A|missense_variant NOMO3|p.G747D|1|0.26|ENSG00000103226|chr16:16273874-16273874|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2794189453125 2 602.263536 1202.51252 -0.005161 -3.1083E-06 -2.5171 -0.0015159 -2.5222 -0.0015191 602.2622135207863 48.263 0.4895 45.313 45.086 45.575 -2.9499 18 13 2 0 0 0 0.65108 1 8835 8835 16.149 3.1066 1 926290 35710 12699 24033 24049 35194 35194 -0.08063743812749635 QENAVRRRWNW 11 Unmodified _QENAVRRRWNW_ 0 0 0 ENST00000308436.11_1_11:62343181-62343496:-|nuORF ENST00000308436.11_1_11:62343181-62343496:-|nuORF ENST00000308436.11_1_11:62343181-62343496:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 757.8880615234375 2 757.889815 1513.76508 NaN NaN NaN NaN NaN NaN NaN 168.51 1 163.62 163.12 164.12 -4.8916 0 0 0 0.22632 1 33222 33222 3.0723 3.0663 1 35711 8626 24034 24050 35195 35195 0.02874494823367968 QENDCGIMEG 10 Unmodified _QENDCGIMEG_ 0 0 0 REV__ENSG00000168556|ENST00000302327|ING2 REV__ENSG00000168556|ENST00000302327|ING2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.80029296875 3 365.807563 1094.40086 NaN NaN NaN NaN NaN NaN NaN 26.976 1 26.976 26.476 27.476 0 0 0 0 2.8426 1 4743 4743 0.013265 0 1 + 35712 18035 24035 24051 35196 35196 -0.14256501441536784 QENEEKRL 8 Unmodified _QENEEKRL_ 0 0 0 ENSG00000138587|ENST00000260453|MNS1 ENSG00000138587|ENST00000260453|MNS1 ENSG00000138587|ENST00000260453|MNS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7011108398438 2 523.26727 1044.51999 0.40442 0.00021162 0.53532 0.00028012 0.93975 0.00049174 523.2677164760771 82.628 0.43904 82.628 82.502 82.942 0 16 12 2 0 0 0 0.69887 1 16082 16082 14.582 0.67564 1 1576100 35713 4179 24036 24052 35197 35197 -0.0004922343014186481 QENGNVHAIA 10 Unmodified _QENGNVHAIA_ 0 0 0 ENSG00000109321|ENST00000395748|AREG ENSG00000109321|ENST00000395748|AREG ENSG00000109321|ENST00000395748|AREG MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1054.5169677734375 1 1052.51195 1051.50467 0.59065 0.00062167 -0.72857 -0.00076682 -0.13791 -0.00014516 1052.5111072495847 25.613 0.52471 25.613 25.46 25.985 0 42 14 4 0 0 0 0.26497 1 4447 4447 39.95 14.55 1 38830000 35714 2525 24037 24053 35198 35198 -0.019020902273268803 QENGNVHAIA 10 Unmodified _QENGNVHAIA_ 0 0 0 ENSG00000109321|ENST00000395748|AREG ENSG00000109321|ENST00000395748|AREG ENSG00000109321|ENST00000395748|AREG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1053.510009765625 1 1052.51195 1051.50467 0.27364 0.00028801 -0.24868 -0.00026174 0.024963 2.6274E-05 1052.511703522821 27.411 0.42738 25.489 25.364 25.791 -1.9222 22 11 3 0 0 0 0.018486 1 4585 4585 92.653 66.385 1 6630000 35715 2525 24037 24053 35199 35199 -0.019020902273268803 QENGNVHAIA 10 Unmodified _QENGNVHAIA_ 0 0 0 ENSG00000109321|ENST00000395748|AREG ENSG00000109321|ENST00000395748|AREG ENSG00000109321|ENST00000395748|AREG MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 1052.51195 1051.50467 0.75256 0.00079208 -0.88794 -0.00093457 -0.13538 -0.00014249 1052.5109711743655 27.359 0.39464 25.577 25.415 25.809 -1.7821 0.022526 -0.00033931 NaN 92.653 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 9067800 35716 2525 24037 24053 -0.019020902273268803 QENGNVHAIA 10 Unmodified _QENGNVHAIA_ 0 0 0 ENSG00000109321|ENST00000395748|AREG ENSG00000109321|ENST00000395748|AREG ENSG00000109321|ENST00000395748|AREG MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 1052.51195 1051.50467 0.43349 0.00045625 -0.3494 -0.00036774 0.084093 8.8509E-05 1052.5115367626934 27.283 0.38569 25.538 25.345 25.731 -1.7446 -0.016054 0.00022751 NaN 92.653 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 9819000 35717 2525 24037 24053 -0.019020902273268803 QENKKYTIQ 9 Unmodified _QENKKYTIQ_ 0 0 0 tr|U7SZZ0|U7SZZ0_FUSNUDNAgyrasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrBPE=3SV=1 tr|U7SZZ0|U7SZZ0_FUSNUDNAgyrasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrBPE=3SV=1 tr|U7SZZ0|U7SZZ0_FUSNUDNAgyrasesubunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3284301757812 2 576.306395 1150.59824 NaN NaN NaN NaN NaN NaN NaN 90.572 1 86.712 86.212 87.212 -3.8595 0 0 0 0.19657 1 17719 17719 4.897 0 1 35718 26306 24038 24054 35200 35200 0.02896209155096585 QENPWDCTC 9 Unmodified _QENPWDCTC_ 0 0 0 nc|ENSG00000185985|Q9H156-2|SLITRK2;ENSG00000185985|ENST00000335565|SLITRK2 nc|ENSG00000185985|Q9H156-2|SLITRK2 nc|ENSG00000185985|Q9H156-2|SLITRK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7882690429688 2 548.197141 1094.37973 0.06459 3.5408E-05 -0.70059 -0.00038406 -0.636 -0.00034865 548.1969524857135 50.318 1.0245 47.273 47.024 48.049 -3.0453 44 29 2 0 0 0 0.84208 1 9266 9266 3.9444 0 1 2669100 35719 7025 24039 24055 35201 35201 -0.16368466750395783 QENRKGLIA 9 Unmodified _QENRKGLIA_ 0 0 0 ENSG00000116288|ENST00000338639|PARK7;ENST00000460192.5_1_1:8025453-8031070:+|nuORF;ENST00000497113.1_1_1:8022845-8031696:+|nuORF;ENST00000465354.5_1_1:8022845-8031070:+|nuORF ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.19183349609375 3 343.533091 1027.57744 -0.3116 -0.00010704 -1.9044 -0.00065423 -2.216 -0.00076128 343.5330767036421 24.388 0.6487 24.388 24.132 24.781 0 28 18 2 0 0 0 0.58921 1 4196 4196 8.1555 8.0823 1 1201300 35720 2923 24040 24056 35202 35202 0.0647566356610696 QENRKGLIA 9 Unmodified _QENRKGLIA_ 0 0 0 ENSG00000116288|ENST00000338639|PARK7;ENST00000460192.5_1_1:8025453-8031070:+|nuORF;ENST00000497113.1_1_1:8022845-8031696:+|nuORF;ENST00000465354.5_1_1:8022845-8031070:+|nuORF ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 343.533091 1027.57744 0.87946 0.00030212 -1.7757 -0.00061002 -0.89626 -0.0003079 343.53263396419 25.994 0.5113 24.345 24.071 24.583 -1.6482 0.050134 -0.0003633 NaN 8.1555 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1173900 35721 2923 24040 24056 0.0647566356610696 QENRKGLIA 9 Unmodified _QENRKGLIA_ 0 0 0 ENSG00000116288|ENST00000338639|PARK7;ENST00000460192.5_1_1:8025453-8031070:+|nuORF;ENST00000497113.1_1_1:8022845-8031696:+|nuORF;ENST00000465354.5_1_1:8022845-8031070:+|nuORF ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 343.533091 1027.57744 0.11038 3.7918E-05 -1.2545 -0.00043095 -1.1441 -0.00039304 343.53291414984835 25.871 0.58653 24.236 23.926 24.513 -1.6347 -0.058998 0.00017389 NaN 8.1555 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1293700 35722 2923 24040 24056 0.0647566356610696 QENRKGLIA 9 Unmodified _QENRKGLIA_ 0 0 0 ENSG00000116288|ENST00000338639|PARK7;ENST00000460192.5_1_1:8025453-8031070:+|nuORF;ENST00000497113.1_1_1:8022845-8031696:+|nuORF;ENST00000465354.5_1_1:8022845-8031070:+|nuORF ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 343.533091 1027.57744 -0.71049 -0.00024408 -0.87326 -0.0003 -1.5838 -0.00054407 343.5332275892611 26.133 0.4855 24.211 23.917 24.402 -1.9222 -0.084225 0.00056676 NaN 8.1555 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1135500 35723 2923 24040 24056 0.0647566356610696 QENTFVEQV 9 Unmodified _QENTFVEQV_ 0 0 0 GCC2|p.L712Cfs*16|1|0.49|ENSG00000135968|chr2:108471458-108471458|T/-|frameshift_variant;ENSG00000135968|ENST00000309863|GCC2 GCC2|p.L712Cfs*16|1|0.49|ENSG00000135968|chr2:108471458-108471458|T/-|frameshift_variant GCC2|p.L712Cfs*16|1|0.49|ENSG00000135968|chr2:108471458-108471458|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.773193359375 2 547.261653 1092.50875 0.35628 0.00019498 0.031162 1.7054E-05 0.38744 0.00021203 547.261208277542 90.94 0.27722 86.845 86.742 87.019 -4.0946 9 7 2 0 0 0 0.81703 1 17357 17357 14.838 0.93222 1 606810 35724 3972 24041 24057 35203 35203 -0.03380045524295383 QEPAPPPPP 9 Unmodified _QEPAPPPPP_ 0 0 0 REV__nc|ENSG00000204463|P46379-5|BAG6 REV__nc|ENSG00000204463|P46379-5|BAG6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2579650878906 2 465.239993 928.465432 0.20162 9.3804E-05 -1.3933 -0.00064823 -1.1917 -0.00055443 465.239340088142 37.4 0.93559 37.4 36.887 37.823 0 41 26 2 0 0 0 0.12505 1 6847 6847 47.749 0 1 873820 + 35725 19538 24042 24058 35204 35204 -0.0016619051091311121 QEPAPPPPP 9 Unmodified _QEPAPPPPP_ 0 0 0 REV__nc|ENSG00000204463|P46379-5|BAG6 REV__nc|ENSG00000204463|P46379-5|BAG6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.250732421875 2 465.239993 928.465432 0.26968 0.00012546 -0.38044 -0.000177 -0.11077 -5.1533E-05 465.2395926826212 36.067 5.1361 33.79 32.726 37.862 -2.2766 248 146 3 0 0 0 0.28819 1 7157 7157 32.305 0 1 7106700 + 35726 19538 24042 24058 35205 35205 -0.0016619051091311121 QEPARVSE 8 Unmodified _QEPARVSE_ 0 0 0 REV__ENSG00000178789|ENST00000392621|CD300LB REV__ENSG00000178789|ENST00000392621|CD300LB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22991943359375 2 458.230156 914.445759 -1.0686 -0.00048965 1.349 0.00061817 0.28046 0.00012851 458.2306839667985 19.113 0.34463 17.478 17.254 17.598 -1.6351 14 9 2 0 0 0 8448 1 2886 2886 3.2813 0 1 259660 + 35727 18620 24043 24059 35206 35206 -0.0148856652166387 QEPEGDPFQ 9 Unmodified _QEPEGDPFQ_ 0 0 0 ENST00000398125.5_1_4:2931220-2931337:+|nuORF ENST00000398125.5_1_4:2931220-2931337:+|nuORF ENST00000398125.5_1_4:2931220-2931337:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.676513671875 2 523.724904 1045.43525 NaN NaN NaN NaN NaN NaN NaN 72.697 1 69.386 68.886 69.886 -3.3107 0 0 0 0.18705 1 14168 14168 25.399 3.6527 1 35728 9479 24044 24060 35207 35207 -0.08564593966752909 QEPGIDKE 8 Unmodified _QEPGIDKE_ 0 0 0 REV__USP46|p.N151Mfs*4|1|0.4|ENSG00000109189|chr4:52626127-52626127|T/-|frameshift_variant REV__USP46|p.N151Mfs*4|1|0.4|ENSG00000109189|chr4:52626127-52626127|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.224609375 2 458.224539 914.434526 0.19332 8.8584E-05 -0.11242 -5.1512E-05 0.080904 3.7072E-05 458.2244050717262 32.83 0.62903 30.684 30.343 30.972 -2.1468 30 17 2 0 0 0 0.54916 1 5702 5702 25.399 1.3787 1 1478300 + 35729 15157 24045 24061 35208 35208 -0.026113886158100286 QEPGLPHA 8 Unmodified _QEPGLPHA_ 0 0 0 REV__ENST00000343938.8_1_1:1263308-1263773:+|nuORF REV__ENST00000343938.8_1_1:1263308-1263773:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25396728515625 2 424.716685 847.418816 0.11855 5.0348E-05 -0.2224 -9.4457E-05 -0.10385 -4.4109E-05 424.7166806527181 31.306 0.42009 31.306 31.18 31.6 0 16 11 2 0 0 0 0.95284 1 5631 5631 9.3474 4.1168 1 1058200 + 35730 20738 24046 24062 35209 35209 -0.010996303421961784 QEPRRGQPD 9 Unmodified _QEPRRGQPD_ 0 0 0 RBCK1|p.G182R|1|0.47|ENSG00000125826|chr20:419430-419430|G/A|missense_variant RBCK1|p.G182R|1|0.47|ENSG00000125826|chr20:419430-419430|G/A|missense_variant RBCK1|p.G182R|1|0.47|ENSG00000125826|chr20:419430-419430|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2655639648438 2 541.770511 1081.52647 1.3604 0.00073704 0.86052 0.0004662 2.2209 0.0012032 541.7708882499703 26.069 0.48018 24.325 24.109 24.589 -1.7444 34 13 4 0 0 0 0.76271 1 4637 4637 14.838 14.838 1 9857200 35731 12869 24047 24063 35210 35210 -0.011032854787572433 QEPSPVGSR 9 Unmodified _QEPSPVGSR_ 0 0 0 nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A;GRAMD1A|p.S263N|1|0.3|ENSG00000089351|chr19:35013609-35013609|G/A|missense_variant nc|ENSG00000089351|Q96CP6-2|GRAMD1A nc|ENSG00000089351|Q96CP6-2|GRAMD1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7434387207031 2 478.743431 955.472308 1.0172 0.00048698 -1.0634 -0.00050909 -0.046183 -2.211E-05 478.74287510140675 24.51 0.79767 22.862 22.402 23.199 -1.6482 35 22 2 0 0 0 0.27986 1 4299 4299 32.786 3.7041 1 618660 35732 1761 24048 24064 35211 35211 -0.007208776303173181 QEPSPVGSR 9 Unmodified _QEPSPVGSR_ 0 0 0 nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A;GRAMD1A|p.S263N|1|0.3|ENSG00000089351|chr19:35013609-35013609|G/A|missense_variant nc|ENSG00000089351|Q96CP6-2|GRAMD1A nc|ENSG00000089351|Q96CP6-2|GRAMD1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7432861328125 2 478.743431 955.472308 0.013445 6.4365E-06 0.11059 5.2945E-05 0.12404 5.9382E-05 478.7434504139161 24.458 0.58664 22.924 22.609 23.195 -1.5342 26 16 2 0 0 0 0.54076 1 3994 3994 17.113 3.2068 1 725720 35733 1761 24048 24064 35212 35212 -0.007208776303173181 QEPTGEEPA 9 Unmodified _QEPTGEEPA_ 0 0 0 ENSG00000189046|ENST00000429722|ALKBH2;ENST00000536720.1_1_12:109530171-109530633:-|nuORF;nc|ENSG00000189046|Q6NS38-2|ALKBH2 ENSG00000189046|ENST00000429722|ALKBH2 ENSG00000189046|ENST00000429722|ALKBH2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72076416015625 2 479.211629 956.408705 0.050154 2.4034E-05 0.87436 0.000419 0.92451 0.00044304 479.2114752313686 24.78 1.2415 23.246 22.785 24.027 -1.5342 117 35 4 0 0 0 0.31673 1 4012 4012 47.749 0 1 3449300 35734 7212 24049 24065 35213 35213 -0.07124282858092101 QEPWHLKK 8 Unmodified _QEPWHLKK_ 0 0 0 REV__nc|ENSG00000164542|Q8NCT3-2|MATCAP2 REV__nc|ENSG00000164542|Q8NCT3-2|MATCAP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2846069335938 2 533.295633 1064.57671 -0.083903 -4.4745E-05 0.27981 0.00014922 0.19591 0.00010448 533.2958385206051 91.117 2.165 91.117 90.686 92.851 0 94 61 2 0 0 0 0.73426 1 17944 17944 9.3474 0 1 2008700 + 35735 24140 24050 24066 35214 35214 0.04700868917052503 QEQADILY 8 Unmodified _QEQADILY_ 0 0 0 nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2584228515625 2 490.24019 978.465826 0.32542 0.00015953 -0.13558 -6.6466E-05 0.18984 9.3066E-05 490.24006498485636 99.385 1.4074 95.116 94.367 95.774 -4.2692 130 40 4 0 0 0 0.71273 1 18897 18897 12.532 0 1 44113000 35736 1386 24051 24067 35215 35215 -0.0242681558172535 QEQCCQNQ 8 Unmodified _QEQCCQNQ_ 0 0 0 CON__ENSEMBL:ENSBTAP00000016046 CON__ENSEMBL:ENSBTAP00000016046 CON__ENSEMBL:ENSBTAP00000016046 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2548522949219 2 490.681659 979.348764 -0.19758 -9.6947E-05 -3.8253 -0.001877 -4.0229 -0.001974 490.6807755754108 56.964 0.35191 53.787 53.65 54.002 -3.1761 12 9 2 0 0 0 0.97966 1 10591 10591 7.2892 2.5332 1 596170 + 35737 640 24052 24068 35216 35216 -0.14173620064616443 QEQDSRLWSP 10 Unmodified _QEQDSRLWSP_ 0 0 0 ENST00000557612.5_1_14:70795945-70826359:-|nuORF;ENST00000389912.6_1_14:70809414-70826359:-|nuORF ENST00000557612.5_1_14:70795945-70826359:-|nuORF ENST00000557612.5_1_14:70795945-70826359:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7683715820312 2 623.296559 1244.57856 0.82793 0.00051605 -0.46913 -0.00029241 0.3588 0.00022364 623.2962434306535 79.83 1.3215 79.83 79.166 80.487 0 119 37 4 0 0 0 8.733E-19 1 15580 15580 179.28 108.95 1 44992000 35738 9359 24053 24069 35217 35217 -0.03394166855673575 QEQDSRLWSP 10 Unmodified _QEQDSRLWSP_ 0 0 0 ENST00000557612.5_1_14:70795945-70826359:-|nuORF;ENST00000389912.6_1_14:70809414-70826359:-|nuORF ENST00000557612.5_1_14:70795945-70826359:-|nuORF ENST00000557612.5_1_14:70795945-70826359:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7593994140625 2 623.296559 1244.57856 0.9482 0.00059101 -0.59295 -0.00036958 0.35524 0.00022142 623.2961562718427 83.618 1.4997 80.01 79.266 80.766 -3.6079 151 42 5 0 0 0 2.0453000000000002E-27 1 16325 16325 182.24 108.04 1 72154000 35739 9359 24053 24069 35218 35218 -0.03394166855673575 QEQDSRLWSP 10 Unmodified _QEQDSRLWSP_ 0 0 0 ENST00000557612.5_1_14:70795945-70826359:-|nuORF;ENST00000389912.6_1_14:70809414-70826359:-|nuORF ENST00000557612.5_1_14:70795945-70826359:-|nuORF ENST00000557612.5_1_14:70795945-70826359:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7525024414062 2 623.296559 1244.57856 0.37411 0.00023318 0.12213 7.6121E-05 0.49624 0.00030931 623.2966156039741 83.823 1.6499 79.914 79.084 80.734 -3.9093 138 46 4 0 0 0 2.0453000000000002E-27 1 15934 15934 195.04 120.84 1 57599000 35740 9359 24053 24069 35219 35219 -0.03394166855673575 QEQDSRLWSP 10 Unmodified _QEQDSRLWSP_ 0 0 0 ENST00000557612.5_1_14:70795945-70826359:-|nuORF;ENST00000389912.6_1_14:70809414-70826359:-|nuORF ENST00000557612.5_1_14:70795945-70826359:-|nuORF ENST00000557612.5_1_14:70795945-70826359:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.75732421875 2 623.296559 1244.57856 0.13727 8.5561E-05 0.33979 0.00021179 0.47706 0.00029735 623.296765833273 83.536 1.5679 79.837 79.11 80.677 -3.6985 143 44 4 0 0 0 3.6787E-12 1 15890 15890 169.92 102.09 1 54636000 35741 9359 24053 24069 35220 35220 -0.03394166855673575 QEQEKLLTKK 10 Unmodified _QEQEKLLTKK_ 0 0 0 ENST00000460314.1_1_1:209952643-209952745:+|nuORF;ENST00000476050.5_1_1:209951415-209952745:+|nuORF;nc|ENSG00000009790|Q9Y228-2|TRAF3IP3;ENSG00000009790|ENST00000367025|TRAF3IP3 ENST00000460314.1_1_1:209952643-209952745:+|nuORF ENST00000460314.1_1_1:209952643-209952745:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7578125 2 622.864077 1243.7136 NaN NaN NaN NaN NaN NaN NaN 90.41 1 90.41 89.91 90.91 0 0 0 0 0.22588 1 17659 17659 13.042 5.7532 1 35742 1054 24054 24070 35221 35221 0.10149313286069628 QEQFGGNPFA 10 Unmodified _QEQFGGNPFA_ 0 0 0 UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENST00000533705.5_1_9:86284090-86294929:-|nuORF;ENSG00000175520|ENST00000311659|UBQLN3 UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7691650390625 2 547.748713 1093.48287 0.018987 1.04E-05 -0.18635 -0.00010207 -0.16736 -9.1674E-05 548.2497995816655 112.96 0.54102 108.51 108.29 108.83 -4.4539 21 14 2 0 0 0 0.29449 1 22227 22227 38.176 38.176 1 1547600 35743 7143 24055 24071 35222 35222 -0.060128949759018724 QEQFGGNPFA 10 Unmodified _QEQFGGNPFA_ 0 0 0 UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENST00000533705.5_1_9:86284090-86294929:-|nuORF;ENSG00000175520|ENST00000311659|UBQLN3 UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7801513671875 2 547.748713 1093.48287 0.05704 3.1244E-05 -0.20268 -0.00011102 -0.14564 -7.9772E-05 548.2497512034798 113.05 0.43282 108.52 108.22 108.65 -4.5259 19 11 2 0 0 0 0.59928 1 21664 21664 19.257 6.7254 1 1222200 35744 7143 24055 24071 35223 35223 -0.060128949759018724 QEQFGGNPFA 10 Unmodified _QEQFGGNPFA_ 0 0 0 UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENST00000533705.5_1_9:86284090-86294929:-|nuORF;ENSG00000175520|ENST00000311659|UBQLN3 UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7884521484375 2 547.748713 1093.48287 NaN NaN NaN NaN NaN NaN NaN 112.68 1 108.41 107.91 108.91 -4.2725 0 0 0 0.061765 1 21696 21696 63.961 50.054 1 35745 7143 24055 24071 35224 35224 -0.060128949759018724 QEQKKGRAV 9 Unmodified _QEQKKGRAV_ 0 0 0 REV__ENST00000395811.9_1_17:17057672-17061784:+|nuORF REV__ENST00000395811.9_1_17:17057672-17061784:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2793579101562 2 522.301447 1042.58834 -0.63738 -0.0003329 0.7645 0.0003993 0.12712 6.6396E-05 522.3020021949634 56.517 0.46033 53.327 53.09 53.551 -3.1895 20 12 2 0 0 0 0.80521 1 10478 10478 6.7232 0 1 2526000 + 35746 21268 24056 24072 35225 35225 0.06875065940380409 QEQKKGRAV 9 Unmodified _QEQKKGRAV_ 0 0 0 REV__ENST00000395811.9_1_17:17057672-17061784:+|nuORF REV__ENST00000395811.9_1_17:17057672-17061784:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 522.301447 1042.58834 0.074727 3.903E-05 -0.043735 -2.2843E-05 0.030992 1.6187E-05 522.3014139478182 56.404 0.46178 53.228 53.119 53.58 -3.1761 -0.049583 -0.00028874 NaN 6.7232 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1850100 + 35747 21268 24056 24072 0.06875065940380409 QEQLLSKL 8 Unmodified _QEQLLSKL_ 0 0 0 CENPF|p.V2538L|1|0.36|ENSG00000117724|chr1:214647182-214647182|G/C|missense_variant CENPF|p.V2538L|1|0.36|ENSG00000117724|chr1:214647182-214647182|G/C|missense_variant CENPF|p.V2538L|1|0.36|ENSG00000117724|chr1:214647182-214647182|G/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23590087890625 2 479.782025 957.549496 -0.024547 -1.1777E-05 0.29677 0.00014239 0.27223 0.00013061 479.78204425886366 42.27 0.91674 39.664 39.431 40.348 -2.606 58 25 3 0 0 0 0.58432 1 7581 7581 23.148 1.4018 1 7029000 35748 484 24057 24073 35226 35226 0.06902340586009359 QEQLLSKL 8 Unmodified _QEQLLSKL_ 0 0 0 CENPF|p.V2538L|1|0.36|ENSG00000117724|chr1:214647182-214647182|G/C|missense_variant CENPF|p.V2538L|1|0.36|ENSG00000117724|chr1:214647182-214647182|G/C|missense_variant CENPF|p.V2538L|1|0.36|ENSG00000117724|chr1:214647182-214647182|G/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.782025 957.549496 -0.11459 -5.4978E-05 0.27474 0.00013182 0.16015 7.6838E-05 479.7821133088057 42.426 0.71065 39.707 39.485 40.196 -2.7191 0.03251 -1.0994E-05 NaN 23.148 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 15255000 35749 484 24057 24073 0.06902340586009359 QEQLLSKL 8 Unmodified _QEQLLSKL_ 0 0 0 CENPF|p.V2538L|1|0.36|ENSG00000117724|chr1:214647182-214647182|G/C|missense_variant CENPF|p.V2538L|1|0.36|ENSG00000117724|chr1:214647182-214647182|G/C|missense_variant CENPF|p.V2538L|1|0.36|ENSG00000117724|chr1:214647182-214647182|G/C|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.782025 957.549496 -0.046552 -2.2335E-05 0.2838 0.00013616 0.23725 0.00011383 479.78212056652455 42.303 0.86825 39.652 39.427 40.295 -2.651 -0.022032 -2.2979E-06 NaN 23.148 56 24 3 NaN NaN NaN NaN 0 NaN NaN 0 11239000 35750 484 24057 24073 0.06902340586009359 QEQNETFQA 9 Unmodified _QEQNETFQA_ 0 0 0 ENSG00000136935|ENST00000373555|GOLGA1 ENSG00000136935|ENST00000373555|GOLGA1 ENSG00000136935|ENST00000373555|GOLGA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7741088867188 2 547.741085 1093.46762 0.42411 0.0002323 0.15179 8.3143E-05 0.5759 0.00031544 547.7411177810828 38.065 0.60356 38.065 37.892 38.495 0 27 16 2 0 0 0 0.078741 1 7054 7054 61.602 42.345 1 3198600 35751 4054 24058 24074 35227 35227 -0.07537806563755112 QEQNFPTV 8 Unmodified _QEQNFPTV_ 0 0 0 ENST00000352527.5_1_1:6086454-6100615:+|nuORF ENST00000352527.5_1_1:6086454-6100615:+|nuORF ENST00000352527.5_1_1:6086454-6100615:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25115966796875 2 481.732532 961.45051 -0.29574 -0.00014247 0.28466 0.00013713 -0.011076 -5.3356E-06 481.73267052090904 35.636 1.4194 33.242 32.67 34.089 -2.3938 81 39 3 0 0 0 0.38287 1 6530 6530 37.974 0 1 3337400 35752 8931 24059 24075 35228 35228 -0.031756823789010014 QEQNIPVS 8 Unmodified _QEQNIPVS_ 0 0 0 OVCH1|p.K1050Nfs*2|1|0.18|ENSG00000187950|chr12:29443368-29443368|T/-|frameshift_variant;ENSG00000187950|ENST00000537054|OVCH1;nc|ENSG00000187950|Q7RTY7|OVCH1 OVCH1|p.K1050Nfs*2|1|0.18|ENSG00000187950|chr12:29443368-29443368|T/-|frameshift_variant OVCH1|p.K1050Nfs*2|1|0.18|ENSG00000187950|chr12:29443368-29443368|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2330627441406 2 457.732532 913.45051 0.16106 7.3723E-05 -0.082805 -3.7903E-05 0.078256 3.582E-05 457.73251491224994 33.784 0.61887 31.637 31.222 31.841 -2.1468 25 17 2 0 0 0 0.44108 1 5838 5838 30.637 3.7529 1 973360 35753 7137 24060 24076 35229 35229 -0.009676823789050104 QEQQESLV 8 Unmodified _QEQQESLV_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2366943359375 2 480.735271 959.45599 -0.014785 -7.1076E-06 0.04369 2.1003E-05 0.028905 1.3896E-05 480.73530433295196 33.557 0.73535 33.557 33.059 33.795 0 33 20 2 0 0 0 0.62703 1 6111 6111 25.399 0 1 1148300 35754 1518 24061 24077 35230 35230 -0.02536003587090363 QEQRHREL 8 Unmodified _QEQRHREL_ 0 0 0 REV__ENSG00000068024|ENST00000543185|HDAC4 REV__ENSG00000068024|ENST00000543185|HDAC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7711181640625 2 548.286328 1094.5581 0.0046013 2.5228E-06 3.8519 0.0021119 3.8565 0.0021145 548.2893245373621 50.211 0.16756 47.204 47.109 47.277 -3.0068 6 4 2 0 0 0 0.97173 1 9227 9227 18.135 0 1 806820 + 35755 14219 24062 24078 35231 35231 0.01460707275191453 QEQRKEEEW 9 Unmodified _QEQRKEEEW_ 0 0 0 REV__ENST00000567652.1_3_15:28798864-28806522:+|nuORF REV__ENST00000567652.1_3_15:28798864-28806522:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7622680664062 2 631.294016 1260.57348 0.073673 4.651E-05 1.2029 0.0007594 1.2766 0.00080591 631.2945168082244 66.618 0.95287 66.618 66.274 67.227 0 33 26 2 0 0 0 0.66788 1 12880 12880 22.736 1.1993 1 2620000 + 35756 23132 24063 24079 35232 35232 -0.046384707182596685 QEQRRQKKKKL 11 Unmodified _QEQRRQKKKKL_ 0 0 0 PASD1|p.V650Rfs*13|1|0.16|ENSG00000166049|chrX:151673952-151673953|-/C|frameshift_variant;ENSG00000166049|ENST00000370357|PASD1;nc|ENSG00000166049|Q8IV76-2|PASD1;ENST00000464219.1_1_X:150770025-150841134:+|nuORF;PASD1|p.N589Tfs*62|1|0.39|ENSG00000166049|chrX:151672508-151672508|A/-|frameshift_variant PASD1|p.V650Rfs*13|1|0.16|ENSG00000166049|chrX:151673952-151673953|-/C|frameshift_variant PASD1|p.V650Rfs*13|1|0.16|ENSG00000166049|chrX:151673952-151673953|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26702880859375 3 490.638953 1468.89503 0.078719 3.8622E-05 1.1848 0.00058129 1.2635 0.00061992 490.9724207905583 46.678 0.14058 43.813 43.726 43.867 -2.8653 5 3 2 0 0 0 0.89122 1 8480 8480 0.50596 0 1 717120 35757 5685 24064 24080 35233 35233 0.17933671102491644 QEQSDVKLP 9 Unmodified _QEQSDVKLP_ 0 0 0 SLC39A10|p.R238Gfs*84|1|0.35|ENSG00000196950|chr2:195680745-195680745|A/-|frameshift_variant;ENSG00000196950|ENST00000359634|SLC39A10;ENST00000465851.1_1_2:196545249-196581758:+|nuORF SLC39A10|p.R238Gfs*84|1|0.35|ENSG00000196950|chr2:195680745-195680745|A/-|frameshift_variant SLC39A10|p.R238Gfs*84|1|0.35|ENSG00000196950|chr2:195680745-195680745|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.271728515625 2 522.272021 1042.52949 -0.56445 -0.00029479 -2.7144 -0.0014176 -3.2788 -0.0017124 522.2719251981406 62.139 0.63673 58.77 58.429 59.065 -3.3694 31 17 3 0 0 0 0.35556 1 11623 11623 12.241 12.113 1 1096900 35758 7319 24065 24081 35234 35234 0.009925448553985916 QEQSSRLRRQR 11 Unmodified _QEQSSRLRRQR_ 0 0 0 REV__ENST00000374998.3_1_17:74865111-74909907:+|nuORF REV__ENST00000374998.3_1_17:74865111-74909907:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77923583984375 3 481.934428 1442.78146 NaN NaN NaN NaN NaN NaN NaN 163.4 1 158.34 157.84 158.84 -5.0648 0 0 0 0.22632 1 31794 31794 1.4551 1.4289 1 + 35759 21061 24066 24082 35235 35235 0.07777575989462093 QEQVTAAVA 9 Unmodified _QEQVTAAVA_ 0 0 0 ENST00000546538.1_1_19:16643407-16652813:-|nuORF;CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP ENST00000546538.1_1_19:16643407-16652813:-|nuORF ENST00000546538.1_1_19:16643407-16652813:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.24127197265625 2 458.740357 915.46616 -0.024705 -1.1333E-05 0.52 0.00023855 0.4953 0.00022721 458.74052775543294 43.053 0.69397 40.447 39.969 40.663 -2.606 31 19 2 0 0 0 0.23744 1 7727 7727 43.858 0 1 4544200 35760 524 24067 24083 35236 35236 0.005046041381433497 QEQWEKCN 8 Unmodified _QEQWEKCN_ 0 0 0 REV__NIPSNAP3B|p.A102V|1|0.31|ENSG00000165028|chr9:104768896-104768896|C/T|missense_variant REV__NIPSNAP3B|p.A102V|1|0.31|ENSG00000165028|chr9:104768896-104768896|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.269775390625 2 532.726923 1063.43929 0.14596 7.7757E-05 0.63859 0.00034019 0.78455 0.00041795 532.7271590328521 26.93 0.41072 26.93 26.773 27.183 0 17 11 2 0 0 0 1.0011 1 4735 4735 12.532 3.1841 1 1018200 + 35761 17736 24068 24084 35237 35237 -0.08988827744701666 QEQWRYRLRSF 11 Unmodified _QEQWRYRLRSF_ 0 0 0 REV__ENSG00000107719|ENST00000263563|PALD1 REV__ENSG00000107719|ENST00000263563|PALD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3944702148438 2 784.907673 1567.80079 NaN NaN NaN NaN NaN NaN NaN 122.24 1 117.56 117.06 118.06 -4.6873 0 0 0 0.23698 1 23471 23471 1.1933 0.84271 1 + 35762 15090 24069 24085 35238 35238 0.03960532280348161 QEQYELYCE 9 Unmodified _QEQYELYCE_ 0 0 0 ENSG00000110395|ENST00000264033|CBL;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant;nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB ENSG00000110395|ENST00000264033|CBL;nc|ENSG00000114423|Q13191-3|CBLB ENSG00000110395|ENST00000264033|CBL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2894287109375 2 602.744979 1203.4754 NaN NaN NaN NaN NaN NaN NaN 71.945 1 71.945 71.445 72.445 0 0 0 0 0.1963 1 13942 13942 0.0033805 0 1 35763 400;2789 24070 24086 35239 35239 -0.11819415358513652 QERAEELQEA 10 Unmodified _QERAEELQEA_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;CNTRL|p.N1300Tfs*22|1|0.32|ENSG00000119397|chr9:121150412-121150412|C/-|frameshift_variant;CNTRL|p.K1802Sfs*9|2|0.21|ENSG00000119397|chr9:121162247-121162247|A/-|frameshift_variant;ENST00000431571.5_1_9:123906333-123914781:+|nuORF nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2869262695312 2 601.786024 1201.55749 0.49644 0.00029875 0.17633 0.00010611 0.67277 0.00040486 601.7860627923036 26.445 0.34968 24.811 24.616 24.966 -1.6347 24 9 3 0 0 0 0.049441 1 4369 4369 83.429 0.151 1 1825800 35764 3073 24071 24087 35240 35240 -0.03522176955152645 QERAEELQEA 10 Unmodified _QERAEELQEA_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;CNTRL|p.N1300Tfs*22|1|0.32|ENSG00000119397|chr9:121150412-121150412|C/-|frameshift_variant;CNTRL|p.K1802Sfs*9|2|0.21|ENSG00000119397|chr9:121162247-121162247|A/-|frameshift_variant;ENST00000431571.5_1_9:123906333-123914781:+|nuORF nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2879638671875 2 601.786024 1201.55749 0.13416 8.0738E-05 0.33595 0.00020217 0.47012 0.00028291 601.7861703510868 26.619 0.44422 24.696 24.469 24.913 -1.9222 25 12 3 0 0 0 0.086469 1 4406 4406 65.474 10.225 1 1318500 35765 3073 24071 24087 35241 35241 -0.03522176955152645 QERAEELQEA 10 Unmodified _QERAEELQEA_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;CNTRL|p.N1300Tfs*22|1|0.32|ENSG00000119397|chr9:121150412-121150412|C/-|frameshift_variant;CNTRL|p.K1802Sfs*9|2|0.21|ENSG00000119397|chr9:121162247-121162247|A/-|frameshift_variant;ENST00000431571.5_1_9:123906333-123914781:+|nuORF nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 601.786024 1201.55749 0.43492 0.00026173 -0.0012762 -7.68E-07 0.43364 0.00026096 601.7859597597809 24.803 0.33179 24.803 24.615 24.947 0 0.033023 -0.0002151 NaN 83.429 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1831000 35766 3073 24071 24087 -0.03522176955152645 QERCQLGLP 9 Unmodified _QERCQLGLP_ 0 0 0 REV__ENST00000579188.1_1_17:80358582-80358996:-|nuORF REV__ENST00000579188.1_1_17:80358582-80358996:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.269287109375 2 522.268758 1042.52296 NaN NaN NaN NaN NaN NaN NaN 89.649 1 89.649 89.149 90.149 0 0 0 0 0.19698 1 17510 17510 0.12781 0 1 + 35767 23227 24072 24088 35242 35242 0.003403284230216741 QERDAFESL 9 Unmodified _QERDAFESL_ 0 0 0 nc|ENSG00000204977|O60858-3|TRIM13;ENSG00000204977|ENST00000378182|TRIM13;nc|ENSG00000204977|O60858-2|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7801513671875 2 547.759278 1093.504 0.25059 0.00013726 -0.027753 -1.5202E-05 0.22283 0.00012206 547.7591384694945 85.537 0.62272 81.587 81.318 81.941 -3.9503 39 17 3 0 0 0 0.063365 1 16242 16242 66.457 26.499 1 2755300 35768 7625 24073 24089 35243 35243 -0.03900929667042874 QERDAFESL 9 Unmodified _QERDAFESL_ 0 0 0 nc|ENSG00000204977|O60858-3|TRIM13;ENSG00000204977|ENST00000378182|TRIM13;nc|ENSG00000204977|O60858-2|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7822875976562 2 547.759278 1093.504 NaN NaN NaN NaN NaN NaN NaN 85.524 1 81.812 81.312 82.312 -3.7117 0 0 0 0.022384 1 16338 16338 66.457 15.602 1 35769 7625 24073 24089 35244 35244 -0.03900929667042874 QERDAFESL 9 Unmodified _QERDAFESL_ 0 0 0 nc|ENSG00000204977|O60858-3|TRIM13;ENSG00000204977|ENST00000378182|TRIM13;nc|ENSG00000204977|O60858-2|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7704467773438 2 547.759278 1093.504 NaN NaN NaN NaN NaN NaN NaN 85.61 1 81.898 81.398 82.398 -3.7117 0 0 0 0.0034007 1 16357 16357 74.929 7.5851 1 35770 7625 24073 24089 35245 35245 -0.03900929667042874 QERDAFESL 9 Unmodified _QERDAFESL_ 0 0 0 nc|ENSG00000204977|O60858-3|TRIM13;ENSG00000204977|ENST00000378182|TRIM13;nc|ENSG00000204977|O60858-2|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 nc|ENSG00000204977|O60858-3|TRIM13 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.759278 1093.504 0.14652 8.0259E-05 -0.016589 -9.0867E-06 0.12993 7.1172E-05 547.7592633926125 85.313 0.63515 81.649 81.365 82 -3.6641 0.030992 5.4605E-06 NaN 66.457 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3317900 35771 7625 24073 24089 -0.03900929667042874 QERDPGGITA 10 Unmodified _QERDPGGITA_ 0 0 0 ENSG00000099385|ENST00000215115|BCL7C;nc|ENSG00000099385|Q8WUZ0-2|BCL7C ENSG00000099385|ENST00000215115|BCL7C ENSG00000099385|ENST00000215115|BCL7C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2593383789062 2 522.259445 1042.50434 0.25038 0.00013077 -0.41574 -0.00021713 -0.16536 -8.636E-05 522.2591743894518 27.827 0.55006 27.827 27.597 28.147 0 42 15 3 0 0 0 0.00016845 2 4945 4893;4945 124.95 55.848 1 7806700 35772 1893 24074 24090 35246;35247 35247 -0.015215099471788562 QERDPGGITA 10 Unmodified _QERDPGGITA_ 0 0 0 ENSG00000099385|ENST00000215115|BCL7C;nc|ENSG00000099385|Q8WUZ0-2|BCL7C ENSG00000099385|ENST00000215115|BCL7C ENSG00000099385|ENST00000215115|BCL7C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.272216796875 2 522.259445 1042.50434 0.36159 0.00018884 -0.73489 -0.0003838 -0.3733 -0.00019496 522.2590312258194 29.733 0.59474 27.616 27.314 27.909 -2.1167 46 16 4 0 0 0 0.00095953 3 5341 5314;5341;5360 117.84 64.005 1 6643100 35773 1893 24074 24090 35248;35249;35250 35249 -0.015215099471788562 QERDPGGITA 10 Unmodified _QERDPGGITA_ 0 0 0 ENSG00000099385|ENST00000215115|BCL7C;nc|ENSG00000099385|Q8WUZ0-2|BCL7C ENSG00000099385|ENST00000215115|BCL7C ENSG00000099385|ENST00000215115|BCL7C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2592163085938 2 522.259445 1042.50434 -0.35227 -0.00018398 0.11148 5.8219E-05 -0.2408 -0.00012576 522.2594409413032 29.626 0.55862 27.733 27.473 28.032 -1.8928 45 15 4 0 0 0 0.00021243 2 5065 5015;5065 121.53 58.961 1 7335300 35774 1893 24074 24090 35251;35252 35252 -0.015215099471788562 QERDPGGITA 10 Unmodified _QERDPGGITA_ 0 0 0 ENSG00000099385|ENST00000215115|BCL7C;nc|ENSG00000099385|Q8WUZ0-2|BCL7C ENSG00000099385|ENST00000215115|BCL7C ENSG00000099385|ENST00000215115|BCL7C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.25927734375 2 522.259445 1042.50434 0.57062 0.00029801 -0.82755 -0.0004322 -0.25693 -0.00013418 522.2589819944774 29.76 0.69345 27.686 27.381 28.074 -2.0743 50 19 4 0 0 0 0.0017503 1 5076 5076 114.19 51.614 1 5690100 35775 1893 24074 24090 35253 35253 -0.015215099471788562 QEREQQLR 8 Unmodified _QEREQQLR_ 0 0 0 ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7843627929688 2 543.786161 1085.55777 NaN NaN NaN NaN NaN NaN NaN 26.181 1 26.181 25.681 26.681 0 0 0 0 0.23369 1 4575 4575 0.68139 0 1 35776 5208 24075 24091 35254 35254 0.018412875553167396 QERERARRRRR 11 Unmodified _QERERARRRRR_ 0 0 0 SRRM4|p.R478Q|1|0.5|ENSG00000139767|chr12:119154284-119154284|G/A|missense_variant SRRM4|p.R478Q|1|0.5|ENSG00000139767|chr12:119154284-119154284|G/A|missense_variant SRRM4|p.R478Q|1|0.5|ENSG00000139767|chr12:119154284-119154284|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.701416015625 3 523.64035 1567.89922 NaN NaN NaN NaN NaN NaN NaN 72.55 1 69.012 68.512 69.512 -3.5385 0 0 0 0.23379 1 13755 13755 2.4348 1.22 1 35777 25789 24076 24092 35255 35255 0.13798573368762845 QERFGKWM 8 Unmodified _QERFGKWM_ 0 0 0 REV__ENST00000567961.5_1_16:1026783-1026876:-|nuORF REV__ENST00000567961.5_1_16:1026783-1026876:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2638549804688 2 541.266019 1080.51748 0.22535 0.00012198 -4.2621 -0.0023069 -4.0367 -0.0021849 541.7653851155517 115.46 0.40756 110.99 110.81 111.22 -4.4726 14 11 2 0 0 0 0.73936 1 22762 22762 8.5933 0.43775 1 1340400 + 35778 23135 24077 24093 35256 35256 -0.019553503688030105 QERGRGAAA 9 Unmodified _QERGRGAAA_ 0 0 0 REV__ENSG00000185056|ENST00000340147|C5orf47 REV__ENSG00000185056|ENST00000340147|C5orf47 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.240966796875 2 458.24139 914.468226 NaN NaN NaN NaN NaN NaN NaN 17.906 1 17.906 17.406 18.406 0 0 0 0 0.23508 1 2854 2854 11.64 0 1 + 35779 18938 24078 24094 35257 35257 0.0075707766660571 QERKVRTRKYW 11 Unmodified _QERKVRTRKYW_ 0 0 0 REV__ENST00000473125.5_1_15:34697252-34699017:-|nuORF REV__ENST00000473125.5_1_15:34697252-34699017:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7210693359375 4 388.223209 1548.86373 0.1555 6.0367E-05 0.59112 0.00022949 0.74661 0.00028985 388.2232810858787 35.271 0.45432 33.018 32.776 33.231 -2.2527 18 12 2 0 0 0 0.89002 1 6186 6186 0.0072825 0.0067181 1 588610 + 35780 22068 24079 24095 35258 35258 0.11125098068396255 QERMNQKQALQ 11 Unmodified _QERMNQKQALQ_ 0 0 0 nc|ENSG00000134899|P28715-3|ERCC5;ENSG00000134899|ENST00000652225|ERCC5 nc|ENSG00000134899|P28715-3|ERCC5 nc|ENSG00000134899|P28715-3|ERCC5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22674560546875 3 458.569987 1372.68813 -0.25751 -0.00011809 0.18514 8.49E-05 -0.07237 -3.3187E-05 458.5699098170426 56.144 0.579 53.25 52.966 53.545 -2.8944 41 16 3 0 0 0 0.65962 1 10811 10811 0.0059557 0 1 10178000 35781 3881 24080 24096 35259 35259 0.016695154920398636 QERPSVTSY 9 Unmodified _QERPSVTSY_ 0 0 0 ENST00000550231.1_1_12:110825542-110834223:-|nuORF;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7 ENST00000550231.1_1_12:110825542-110834223:-|nuORF ENST00000550231.1_1_12:110825542-110834223:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2607421875 2 533.76182 1065.50909 0.3886 0.00020742 -0.20624 -0.00011008 0.18236 9.7339E-05 533.7618766460007 39.175 0.62095 36.733 36.479 37.1 -2.4419 25 17 2 0 0 0 0.73268 1 7020 7020 13.042 0.80181 1 1699100 35782 7276 24081 24097 35260 35260 -0.021046258044179922 QERPSVTSY 9 Unmodified _QERPSVTSY_ 0 0 0 ENST00000550231.1_1_12:110825542-110834223:-|nuORF;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7 ENST00000550231.1_1_12:110825542-110834223:-|nuORF ENST00000550231.1_1_12:110825542-110834223:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2865600585938 2 533.76182 1065.50909 0.20782 0.00011092 0.47068 0.00025123 0.6785 0.00036216 533.7620292905184 39.156 0.62642 36.751 36.441 37.068 -2.4049 29 17 2 0 0 0 0.70212 1 6964 6964 27.629 3.6082 1 1167100 35783 7276 24081 24097 35261 35261 -0.021046258044179922 QERREMQREIL 11 Unmodified _QERREMQREIL_ 0 0 0 ENSG00000101144|ENST00000395863|BMP7 ENSG00000101144|ENST00000395863|BMP7 ENSG00000101144|ENST00000395863|BMP7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 496.7658386230469 3 496.596425 1486.76744 0.14981 7.4393E-05 2.2421 0.0011134 2.3919 0.0011878 496.5992371608118 147.38 0.93993 142.35 141.94 142.88 -5.025 112 26 6 0 0 0 0.88957 1 28569 28569 1.4551 1.2831 1 5888600 35784 2038 24082 24098 35262 35262 0.04353162446159331 QERRKEKKRRR 11 Unmodified _QERRKEKKRRR_ 0 0 0 nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18;ENST00000497508.1_1_2:669582-669891:-|nuORF nc|ENSG00000151353|Q96B42-2|TMEM18 nc|ENSG00000151353|Q96B42-2|TMEM18 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3950805664062 2 785.479663 1568.94477 NaN NaN NaN NaN NaN NaN NaN 162.83 1 162.83 162.33 163.33 0 0 0 0 0.23698 1 32767 32767 0 0 1 35785 4862 24083 24099 35263 35263 0.18305798831147513 QERSIEPKY 9 Unmodified _QERSIEPKY_ 0 0 0 REV__nc|ENSG00000079308|Q9HBL0-1|TNS1 REV__nc|ENSG00000079308|Q9HBL0-1|TNS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3363037109375 2 575.29857 1148.58259 0.21026 0.00012096 -0.28676 -0.00016498 -0.076506 -4.4014E-05 575.2984042893215 61.992 0.8437 58.622 58.288 59.131 -3.3694 79 23 5 0 0 0 0.62102 1 11530 11530 11.64 0.81637 1 70552000 + 35786 14394 24084 24100 35264 35264 0.014239226380595937 QERSKVKVL 9 Unmodified _QERSKVKVL_ 0 0 0 nc|ENSG00000165113|Q5VSY0-2|GKAP1;ENSG00000165113|ENST00000376371|GKAP1 nc|ENSG00000165113|Q5VSY0-2|GKAP1 nc|ENSG00000165113|Q5VSY0-2|GKAP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7852172851562 2 543.835123 1085.65569 NaN NaN NaN NaN NaN NaN NaN 49.351 1 46.352 45.852 46.852 -2.999 0 0 0 0.23508 1 9022 9022 10.824 0 1 35787 5598 24085 24101 35265 35265 0.11629096151318663 QERWVGLPP 9 Unmodified _QERWVGLPP_ 0 0 0 ENSG00000271447|ENST00000605424|MMP28 ENSG00000271447|ENST00000605424|MMP28 ENSG00000271447|ENST00000605424|MMP28 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2632446289062 2 541.293091 1080.57163 0.11668 6.3155E-05 0.017703 9.5823E-06 0.13438 7.2738E-05 541.2931800439019 56.774 1.5405 56.774 55.802 57.343 0 87 43 3 0 0 0 0.58699 1 10746 10746 25.399 3.6527 1 2354900 35788 8002 24086 24102 35266 35266 0.03456565054420935 QERYDFDL 8 Unmodified _QERYDFDL_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.778564453125 2 543.248546 1084.48254 0.26096 0.00014177 0.2465 0.00013391 0.50747 0.00027568 543.2482670506225 79.45 0.3945 75.94 75.727 76.121 -3.5102 14 10 2 0 0 0 0.9455 1 15523 15523 3.9444 1.8846 1 1163300 + 35789 15726 24087 24103 35267 35267 -0.05632314695776586 QERYDFDL 8 Unmodified _QERYDFDL_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.248546 1084.48254 0.5293 0.00028754 -0.86017 -0.00046729 -0.33087 -0.00017975 543.2479109995576 75.71 0.55067 75.71 75.546 76.096 0 -0.11485 -0.00021211 NaN 3.9444 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1648800 + 35790 15726 24087 24103 -0.05632314695776586 QESAGSAVVA 10 Unmodified _QESAGSAVVA_ 0 0 0 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24609375 2 459.729989 917.445425 0.2651 0.00012188 0.18887 8.6828E-05 0.45397 0.0002087 459.7300143599207 29.843 0.52034 29.843 29.61 30.13 0 21 14 2 0 0 0 0.52179 1 5354 5354 32.786 7.3864 1 816120 35791 6229 24088 24104 35268 35268 -0.016599862415318967 QESAGSAVVA 10 Unmodified _QESAGSAVVA_ 0 0 0 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2313537597656 2 459.729989 917.445425 0.17961 8.2571E-05 0.069257 3.184E-05 0.24887 0.00011441 459.7300044652968 31.679 0.59852 29.448 29.2 29.798 -2.2305 27 16 2 0 0 0 0.4144 1 5770 5770 29.841 7.1043 1 994280 35792 6229 24088 24104 35269 35269 -0.016599862415318967 QESAGYVP 8 Unmodified _QESAGYVP_ 0 0 0 ENSG00000115423|ENST00000389394|DNAH6;DNAH6|p.S3773Lfs*5|1|0.09|ENSG00000115423|chr2:84796377-84796377|T/-|frameshift_variant;DNAH6|p.R2682Kfs*27|1|0.42|ENSG00000115423|chr2:84701316-84701317|-/A|frameshift_variant;DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant;nc|ENSG00000115423|Q9C0G6-4|DNAH6;ENST00000602588.1_2_2:84885442-84924911:+|nuORF ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24566650390625 2 425.7007 849.386848 0.066296 2.8222E-05 0.90169 0.00038385 0.96799 0.00041207 425.7008490742756 74.599 0.34904 71.005 70.815 71.164 -3.594 12 9 2 0 0 0 0.89646 1 14152 14152 0.12286 0 1 1016900 35793 2855 24089 24105 35270 35270 -0.04387042815994846 QESCGDREMQE 11 Unmodified _QESCGDREMQE_ 0 0 0 REV__ENST00000511451.5_1_4:26364233-26422385:+|nuORF REV__ENST00000511451.5_1_4:26364233-26422385:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.7936706542969 3 437.836181 1310.48671 0.030039 1.3152E-05 0.96024 0.00042043 0.99028 0.00043358 437.8365643710831 56.604 0.66868 53.414 53.055 53.723 -3.1895 33 18 3 0 0 0 0.65903 1 10503 10503 0.00056442 0 1 2905300 + 35794 18005 24090 24106 35271 35271 -0.156109613266608 QESCGDREMQE 11 Unmodified _QESCGDREMQE_ 0 0 0 REV__ENST00000511451.5_1_4:26364233-26422385:+|nuORF REV__ENST00000511451.5_1_4:26364233-26422385:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 437.836181 1310.48671 -0.29033 -0.00012712 1.4195 0.00062153 1.1292 0.00049441 437.83674326567586 56.227 0.68618 53.332 53.032 53.718 -2.8944 -0.033722 0.00033499 NaN 0.00056442 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2808000 + 35795 18005 24090 24106 -0.156109613266608 QESCGDREMQE 11 Unmodified _QESCGDREMQE_ 0 0 0 REV__ENST00000511451.5_1_4:26364233-26422385:+|nuORF REV__ENST00000511451.5_1_4:26364233-26422385:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 437.836181 1310.48671 -0.14618 -6.4005E-05 1.0725 0.00046957 0.92629 0.00040556 437.8365833669252 56.527 0.74379 53.351 53.008 53.751 -3.1761 -0.014483 -0.00012089 NaN 0.00056442 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 3932500 + 35796 18005 24090 24106 -0.156109613266608 QESCGGGG 8 Unmodified _QESCGGGG_ 0 0 0 REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2767231101948278|0.4573538105707593|1.48|479.0|4|1|sense REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2767231101948278|0.4573538105707593|1.48|479.0|4|1|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.63275146484375 2 347.626678 693.238803 NaN NaN NaN NaN NaN NaN NaN 111.6 1 107.18 106.68 107.68 -4.4231 0 0 0 0.2396 1 21992 21992 0 0 1 + 35797 13029 24091 24107 35272 35272 -0.12008677341475504 QESCQIQSY 9 Unmodified _QESCQIQSY_ 0 0 0 ENST00000373874.6_1_20:35220081-35220303:+|nuORF ENST00000373874.6_1_20:35220081-35220303:+|nuORF ENST00000373874.6_1_20:35220081-35220303:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7882080078125 2 543.232039 1084.44952 0.61965 0.00033661 -0.34412 -0.00018694 0.27553 0.00014967 543.2319114129745 44.486 0.63329 44.486 44.357 44.99 0 24 17 3 0 0 0 0.82765 1 8394 8394 13.906 3.0821 1 1159900 35798 9209 24092 24108 35273 35273 -0.08932264810118795 QESFMTSREM 10 Unmodified _QESFMTSREM_ 0 0 0 ENST00000504656.1_1_5:289217-290334:-|nuORF ENST00000504656.1_1_5:289217-290334:-|nuORF ENST00000504656.1_1_5:289217-290334:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 623.2674560546875 2 623.265555 1244.51656 NaN NaN NaN NaN NaN NaN NaN 27.193 1 25.411 24.911 25.911 -1.7821 0 0 0 0.22588 1 4825 4825 2.9952 0 1 35799 10658 24093 24109 35274 35274 -0.09591977590662282 QESGFTYLP 9 Unmodified _QESGFTYLP_ 0 0 0 nc|ENSG00000158079|A2A3K4|PTPDC1;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2686767578125 2 521.248015 1040.48148 0.2899 0.00015111 0.067025 3.4937E-05 0.35692 0.00018605 521.2479611711893 137.81 0.95905 132.97 132.52 133.48 -4.84 69 26 4 0 0 0 0.15889 2 26547 26507;26547 42.232 33.319 1 11398000 35800 5153 24094 24110 35275;35276 35276 -0.03714529064677663 QESKTLPA 8 Unmodified _QESKTLPA_ 0 0 0 nc|ENSG00000133816|O94851|MICAL2 nc|ENSG00000133816|O94851|MICAL2 nc|ENSG00000133816|O94851|MICAL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23602294921875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 65.895 1 65.895 65.395 66.395 0 0 0 0 0.21486 1 12716 12716 12.532 0.89125 1 35801 12332 24095 24111 35277 35277 0.01901505626483413 QESKTLPA 8 Unmodified _QESKTLPA_ 0 0 0 nc|ENSG00000133816|O94851|MICAL2 nc|ENSG00000133816|O94851|MICAL2 nc|ENSG00000133816|O94851|MICAL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2362365722656 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 68.976 1 65.796 65.296 66.296 -3.1796 0 0 0 0.20896 1 13403 13403 18.135 2.2878 1 35802 12332 24095 24111 35278 35278 0.01901505626483413 QESKTLPA 8 Unmodified _QESKTLPA_ 0 0 0 nc|ENSG00000133816|O94851|MICAL2 nc|ENSG00000133816|O94851|MICAL2 nc|ENSG00000133816|O94851|MICAL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23614501953125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 69.436 1 66.045 65.545 66.545 -3.3903 0 0 0 0.20462 1 13132 13132 21.747 2.4897 1 35803 12332 24095 24111 35279 35279 0.01901505626483413 QESKWTVRVQ 10 Unmodified _QESKWTVRVQ_ 0 0 0 DZIP1|p.A376V|1|0.71|ENSG00000134874|chr13:95619931-95619931|G/A|missense_variant DZIP1|p.A376V|1|0.71|ENSG00000134874|chr13:95619931-95619931|G/A|missense_variant DZIP1|p.A376V|1|0.71|ENSG00000134874|chr13:95619931-95619931|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7506103515625 2 630.838394 1259.66223 NaN NaN NaN NaN NaN NaN NaN 53.696 1 53.696 53.196 54.196 0 0 0 0 0.22588 1 10231 10231 5.2969 2.0156 1 35804 904 24096 24112 35280 35280 0.04278989312047088 QESPVECHV 9 Unmodified _QESPVECHV_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.15045166015625 3 343.155291 1026.44404 -0.44323 -0.0001521 0.82124 0.00028181 0.378 0.00012971 343.15556899976997 55.931 2.1759 53.047 52.525 54.701 -2.8837 143 62 4 0 0 0 0.5202 1 10690 10690 1.6919 1.4265 1 39677000 + 35805 18981 24097 24113 35281 35281 -0.0681194360192876 QESPVECHV 9 Unmodified _QESPVECHV_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 343.155291 1026.44404 0.071231 2.4443E-05 0.3341 0.00011465 0.40533 0.00013909 343.15537999144175 56.33 1.6114 53.14 52.529 54.14 -3.1895 0.035026 -0.0003394 NaN 1.6919 122 45 4 NaN NaN NaN NaN 0 NaN NaN 0 41381000 + 35806 18981 24097 24113 -0.0681194360192876 QESPVECHV 9 Unmodified _QESPVECHV_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 343.155291 1026.44404 -0.66483 -0.00022814 1.0198 0.00034996 0.35499 0.00012182 343.1556232169903 56.317 1.8793 53.141 52.518 54.397 -3.1761 0.035343 0.00036652 NaN 1.6919 145 52 4 NaN NaN NaN NaN 0 NaN NaN 0 45304000 + 35807 18981 24097 24113 -0.0681194360192876 QESRISPY 8 Unmodified _QESRISPY_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25836181640625 2 490.245806 978.47706 0.089054 4.3658E-05 0.456 0.00022355 0.54505 0.00026721 490.24603024368105 44.833 0.74252 42.043 41.677 42.42 -2.79 55 20 4 0 0 0 0.0942 1 8414 8414 64.236 2.8788 1 14849000 35808 1319 24098 24114 35282 35282 -0.013039934875791914 QESRISPY 8 Unmodified _QESRISPY_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2733459472656 2 490.245806 978.47706 0.064225 3.1486E-05 0.40927 0.00020064 0.47349 0.00023213 490.24600566222523 44.747 0.66989 41.981 41.664 42.334 -2.7661 45 18 3 0 0 0 0.54916 1 8162 8162 25.399 2.2509 1 11119000 35809 1319 24098 24114 35283 35283 -0.013039934875791914 QESRISPY 8 Unmodified _QESRISPY_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2577819824219 2 490.245806 978.47706 -0.33931 -0.00016635 0.97571 0.00047834 0.6364 0.00031199 490.24631159155433 44.784 0.77171 42.037 41.674 42.446 -2.7475 56 21 3 0 0 0 0.0942 1 8125 8125 64.236 2.8788 1 8111600 35810 1319 24098 24114 35284 35284 -0.013039934875791914 QESSEDDEEH 10 Unmodified _QESSEDDEEH_ 0 0 0 REV__ENSG00000130528|ENST00000252825|HRC REV__ENSG00000130528|ENST00000252825|HRC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2723999023438 2 602.715461 1203.41637 NaN NaN NaN NaN NaN NaN NaN 92.478 1 88.384 87.884 88.884 -4.0946 0 0 0 0.22588 1 17618 17618 6.7232 0 1 + 35811 16012 24099 24115 35285 35285 -0.1772022011914487 QESSPRVGP 9 Unmodified _QESSPRVGP_ 0 0 0 ENST00000454175.1_1_7:99102911-99103010:+|nuORF ENST00000454175.1_1_7:99102911-99103010:+|nuORF ENST00000454175.1_1_7:99102911-99103010:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7433776855469 2 478.743431 955.472308 -0.049475 -2.3686E-05 -0.043212 -2.0687E-05 -0.092687 -4.4373E-05 478.74339419721446 23.071 0.62436 23.071 22.713 23.338 0 32 17 2 0 0 0 0.19171 2 3926 3878;3926 38.176 9.6373 1 956220 35812 10011 24100 24116 35286;35287 35287 -0.007208776303173181 QESSPRVGP 9 Unmodified _QESSPRVGP_ 0 0 0 ENST00000454175.1_1_7:99102911-99103010:+|nuORF ENST00000454175.1_1_7:99102911-99103010:+|nuORF ENST00000454175.1_1_7:99102911-99103010:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7432861328125 2 478.743431 955.472308 1.0172 0.00048698 -1.0634 -0.00050909 -0.046183 -2.211E-05 478.74287510140675 24.51 0.79767 22.862 22.402 23.199 -1.6482 35 22 2 0 0 0 0.27986 1 4249 4249 32.786 11.039 1 618660 35813 10011 24100 24116 35288 35288 -0.007208776303173181 QESSPRVGP 9 Unmodified _QESSPRVGP_ 0 0 0 ENST00000454175.1_1_7:99102911-99103010:+|nuORF ENST00000454175.1_1_7:99102911-99103010:+|nuORF ENST00000454175.1_1_7:99102911-99103010:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7431945800781 2 478.743431 955.472308 0.013445 6.4365E-06 0.11059 5.2945E-05 0.12404 5.9382E-05 478.7434504139161 24.458 0.58664 22.924 22.609 23.195 -1.5342 26 16 2 0 0 0 0.36931 1 3943 3943 27.629 3.6082 1 725720 35814 10011 24100 24116 35289 35289 -0.007208776303173181 QESSPRVGP 9 Unmodified _QESSPRVGP_ 0 0 0 ENST00000454175.1_1_7:99102911-99103010:+|nuORF ENST00000454175.1_1_7:99102911-99103010:+|nuORF ENST00000454175.1_1_7:99102911-99103010:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7433166503906 2 478.743431 955.472308 -0.23031 -0.00011026 0.0089103 4.2658E-06 -0.2214 -0.00010599 478.74353695854876 24.789 0.57674 22.936 22.539 23.116 -1.8534 24 16 2 0 0 0 0.27986 1 4028 4028 32.786 0 1 400250 35815 10011 24100 24116 35290 35290 -0.007208776303173181 QESSVFIPR 9 Unmodified _QESSVFIPR_ 0 0 0 ENST00000506590.1_1_4:78527019-78531849:+|nuORF;ENSG00000156234|ENST00000682537|CXCL13 ENST00000506590.1_1_4:78527019-78531849:+|nuORF ENST00000506590.1_1_4:78527019-78531849:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2864379882812 2 531.782556 1061.55056 0.26664 0.00014179 -0.12644 -6.724E-05 0.14019 7.4553E-05 531.7824429942241 122.09 0.99049 117.55 117.14 118.13 -4.5476 92 27 5 0 0 0 0.36931 1 24091 24091 27.629 2.2295 1 127680000 35816 5081 24101 24117 35291 35291 0.022245549549097632 QESSVFIPR 9 Unmodified _QESSVFIPR_ 0 0 0 ENST00000506590.1_1_4:78527019-78531849:+|nuORF;ENSG00000156234|ENST00000682537|CXCL13 ENST00000506590.1_1_4:78527019-78531849:+|nuORF ENST00000506590.1_1_4:78527019-78531849:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2862548828125 2 531.782556 1061.55056 0.85709 0.00045578 -0.63267 -0.00033644 0.22441 0.00011934 531.7822124287893 122.25 1.3154 117.56 117.06 118.37 -4.6873 103 37 4 0 0 0 0.44932 1 23428 23428 22.736 3.4793 1 104910000 35817 5081 24101 24117 35292 35292 0.022245549549097632 QESSVFIPR 9 Unmodified _QESSVFIPR_ 0 0 0 ENST00000506590.1_1_4:78527019-78531849:+|nuORF;ENSG00000156234|ENST00000682537|CXCL13 ENST00000506590.1_1_4:78527019-78531849:+|nuORF ENST00000506590.1_1_4:78527019-78531849:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2872924804688 2 531.782556 1061.55056 0.36801 0.0001957 -0.16786 -8.9264E-05 0.20016 0.00010644 531.7824612152793 122.03 1.3945 117.5 117.08 118.47 -4.5305 123 38 5 0 0 0 0.44932 1 23463 23463 22.736 0.98964 1 117570000 35818 5081 24101 24117 35293 35293 0.022245549549097632 QESSVFIPR 9 Unmodified _QESSVFIPR_ 0 0 0 ENST00000506590.1_1_4:78527019-78531849:+|nuORF;ENSG00000156234|ENST00000682537|CXCL13 ENST00000506590.1_1_4:78527019-78531849:+|nuORF ENST00000506590.1_1_4:78527019-78531849:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 531.782556 1061.55056 0.26664 0.00014179 -0.12644 -6.724E-05 0.14019 7.4553E-05 531.7824429942241 122.09 0.99049 117.55 117.14 118.13 -4.5476 -0.17015 -0.00012743 NaN 27.629 92 27 5 NaN NaN NaN NaN 0 NaN NaN 0 127680000 35819 5081 24101 24117 0.022245549549097632 QETDWRSTA 9 Unmodified _QETDWRSTA_ 0 0 0 ENST00000406969.5_2_22:20861920-20891439:+|nuORF;ENST00000414658.5_2_22:20861869-20873186:+|nuORF;nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15 ENST00000406969.5_2_22:20861920-20891439:+|nuORF ENST00000406969.5_2_22:20861920-20891439:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7789916992188 2 547.249077 1092.4836 0.34417 0.00018834 0.25271 0.0001383 0.59688 0.00032664 547.2490413532647 32.04 0.4166 32.04 31.879 32.296 0 24 11 3 0 0 0 0.31598 1 5793 5793 30.703 6.6829 1 1365700 35820 1910 24102 24118 35294 35294 -0.058941003268500936 QETDWRSTA 9 Unmodified _QETDWRSTA_ 0 0 0 ENST00000406969.5_2_22:20861920-20891439:+|nuORF;ENST00000414658.5_2_22:20861869-20873186:+|nuORF;nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15 ENST00000406969.5_2_22:20861920-20891439:+|nuORF ENST00000406969.5_2_22:20861920-20891439:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.249077 1092.4836 0.037004 2.025E-05 0.67597 0.00036993 0.71298 0.00039018 547.2493932310459 34.417 0.3768 32.1 31.949 32.325 -2.3175 -0.0079301 7.4307E-05 NaN 30.703 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 943200 35821 1910 24102 24118 -0.058941003268500936 QETEFLSPP 9 Unmodified _QETEFLSPP_ 0 0 0 nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7008666992188 2 524.253297 1046.49204 0.19127 0.00010027 -0.26918 -0.00014112 -0.077914 -4.0847E-05 524.2530979713912 111.19 1.3654 111.19 110.43 111.8 0 69 38 2 0 0 0 0.12663 1 21806 21806 49.554 26.818 1 2955300 35822 12298 24103 24119 35295 35295 -0.029345464102334518 QETEFLSPP 9 Unmodified _QETEFLSPP_ 0 0 0 nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.67626953125 2 524.253297 1046.49204 -0.1051 -5.5098E-05 0.10589 5.5514E-05 0.00079371 4.1611E-07 524.2533584367983 115.92 1.6596 111.43 110.63 112.29 -4.486 98 47 4 0 0 0 0.13813 1 22921 22921 45.7 9.5726 1 3945200 35823 12298 24103 24119 35296 35296 -0.029345464102334518 QETEFLSPP 9 Unmodified _QETEFLSPP_ 0 0 0 nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6907348632812 2 524.253297 1046.49204 -0.2249 -0.0001179 0.053098 2.7837E-05 -0.1718 -9.0066E-05 524.2532904210638 116.03 1.4166 111.45 110.7 112.11 -4.5815 73 40 2 0 0 0 0.47479 1 22356 22356 18.146 9.4009 1 4093800 35824 12298 24103 24119 35297 35297 -0.029345464102334518 QETISSLDNS 10 Unmodified _QETISSLDNS_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7723388671875 2 547.254025 1092.4935 0.2289 0.00012527 0.064402 3.5244E-05 0.2933 0.00016051 547.2540287909875 33.197 0.48727 30.879 30.627 31.114 -2.3175 32 13 3 0 0 0 0.63858 1 6030 6030 17.113 0.96379 1 2129800 + 35825 14014 24104 24120 35298 35298 -0.049049571121486224 QETKSTVAV 9 Unmodified _QETKSTVAV_ 0 0 0 ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3 ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7890625 2 481.761289 961.508025 0.13702 6.6012E-05 -0.68517 -0.00033009 -0.54815 -0.00026408 481.76092735317167 25.759 0.44795 24.124 23.926 24.374 -1.6347 29 12 3 0 0 0 0.029139 1 4240 4240 82.529 26.352 1 4866700 35826 1876 24105 24121 35299 35299 0.02573159826670235 QETKSTVAV 9 Unmodified _QETKSTVAV_ 0 0 0 ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3 ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2547607421875 2 481.761289 961.508025 -0.12362 -5.9556E-05 -0.40901 -0.00019705 -0.53264 -0.0002566 481.7610379016949 25.934 0.58715 24.012 23.849 24.436 -1.9222 31 16 3 0 0 0 0.10265 1 4298 4298 72.968 16.791 1 3228600 35827 1876 24105 24121 35300 35300 0.02573159826670235 QETKTCPL 8 Unmodified _QETKTCPL_ 0 0 0 ZBTB40|p.K799Rfs*9|1|0.28|ENSG00000184677|chr1:22512063-22512063|C/-|frameshift_variant;ENSG00000184677|ENST00000375647|ZBTB40 ZBTB40|p.K799Rfs*9|1|0.28|ENSG00000184677|chr1:22512063-22512063|C/-|frameshift_variant ZBTB40|p.K799Rfs*9|1|0.28|ENSG00000184677|chr1:22512063-22512063|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23297119140625 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 142.02 1 136.99 136.49 137.49 -5.0261 0 0 0 0.22674 1 27361 27361 14.838 2.5976 1 35828 6928 24106 24122 35301 35301 -0.014418541082250158 QETLIQLLH 9 Unmodified _QETLIQLLH_ 0 0 0 ENST00000251334.6_2_17:59945072-59945235:-|nuORF ENST00000251334.6_2_17:59945072-59945235:-|nuORF ENST00000251334.6_2_17:59945072-59945235:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77001953125 2 547.813856 1093.61316 0.28807 0.00015781 2.0136 0.0011031 2.3017 0.0012609 547.8162142810742 134.65 0.17017 129.83 129.73 129.9 -4.8175 6 4 2 0 0 0 0.71527 1 25908 25908 13.906 4.5229 1 1156700 35829 8221 24107 24123 35302 35302 0.0700970102309384 QETQFRQEPIT 11 Unmodified _QETQFRQEPIT_ 0 0 0 ZFP28|p.K559Nfs*50|1|0.36|ENSG00000196867|chr19:56554458-56554458|A/-|frameshift_variant;ENSG00000196867|ENST00000301318|ZFP28 ZFP28|p.K559Nfs*50|1|0.36|ENSG00000196867|chr19:56554458-56554458|A/-|frameshift_variant ZFP28|p.K559Nfs*50|1|0.36|ENSG00000196867|chr19:56554458-56554458|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2352294921875 3 459.565008 1375.67319 0.12655 5.8158E-05 -0.0062605 -2.8771E-06 0.12029 5.5281E-05 459.5650446196724 76.896 0.46054 73.24 73.079 73.54 -3.6565 22 12 3 0 0 0 0.77484 1 14643 14643 6.6599 0.42549 1 1526500 35830 7314 24108 24124 35303 35303 0.00038346895667018543 QETQFRQEPIT 11 Unmodified _QETQFRQEPIT_ 0 0 0 ZFP28|p.K559Nfs*50|1|0.36|ENSG00000196867|chr19:56554458-56554458|A/-|frameshift_variant;ENSG00000196867|ENST00000301318|ZFP28 ZFP28|p.K559Nfs*50|1|0.36|ENSG00000196867|chr19:56554458-56554458|A/-|frameshift_variant ZFP28|p.K559Nfs*50|1|0.36|ENSG00000196867|chr19:56554458-56554458|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 459.565008 1375.67319 -0.11665 -5.3607E-05 0.092342 4.2437E-05 -0.024304 -1.1169E-05 459.56500961417004 76.762 0.41891 73.347 73.003 73.422 -3.4151 0.053572 3.8334E-05 NaN 6.6599 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1755300 35831 7314 24108 24124 0.00038346895667018543 QETRPHPP 8 Unmodified _QETRPHPP_ 0 0 0 REV__KIAA0930|p.T293Hfs*26|1|0.3|ENSG00000100364|chr22:45200011-45200012|-/G|frameshift_variant REV__KIAA0930|p.T293Hfs*26|1|0.3|ENSG00000100364|chr22:45200011-45200012|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2462463378906 2 481.246141 960.477728 -0.45534 -0.00021913 -0.23596 -0.00011355 -0.6913 -0.00033269 481.24626258787356 15.828 0.42585 14.612 14.445 14.871 -1.2159 13 11 2 0 0 0 0.7999 1 2498 2498 4.3292 0 1 327860 + 35832 23712 24109 24125 35304 35304 -0.004091540478725619 QEVDRIKEA 9 Unmodified _QEVDRIKEA_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A;ENST00000482151.1_2:149856814-149868187:+|nuORF;nc|ENSG00000168280|O60282-2|KIF5C ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7764282226562 2 544.290745 1086.56694 -0.031311 -1.7042E-05 0.50118 0.00027279 0.46987 0.00025575 544.2910027119475 23.397 0.38886 21.944 21.784 22.173 -1.4535 33 10 4 0 0 0 1.6838E-16 1 3787 3787 181.69 56.738 1 7036100 35833 6094 24110 24126 35305 35305 0.027116361210119067 QEVDRIKEA 9 Unmodified _QEVDRIKEA_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A;ENST00000482151.1_2:149856814-149868187:+|nuORF;nc|ENSG00000168280|O60282-2|KIF5C ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 544.290745 1086.56694 -0.29627 -0.00016125 0.71217 0.00038763 0.4159 0.00022637 544.2910836420859 23.682 0.45102 21.893 21.699 22.15 -1.7886 -0.058912 0.00025056 NaN 181.69 32 12 4 NaN NaN NaN NaN 0 NaN NaN 0 6090000 35834 6094 24110 24126 0.027116361210119067 QEVDVLFWRLM 11 Unmodified _QEVDVLFWRLM_ 0 0 0 REV__nc|ENSG00000141867|O60885-3|BRD4 REV__nc|ENSG00000141867|O60885-3|BRD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7242431640625 3 479.251595 1434.73296 -0.29272 -0.00014029 -0.775 -0.00037142 -1.0677 -0.00051171 479.25124674839265 38.954 0.44822 36.405 36.157 36.606 -2.5491 17 12 2 0 0 0 0.96173 1 7197 7197 4.1166 0 1 543100 + 35835 24075 24111 24127 35306 35306 0.032979463053607105 QEVEAKTQF 9 Unmodified _QEVEAKTQF_ 0 0 0 REV__ENST00000495327.1_1_7:127953176-127954962:-|nuORF REV__ENST00000495327.1_1_7:127953176-127954962:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2739868164062 2 540.272021 1078.52949 0.10819 5.8452E-05 -0.18997 -0.00010263 -0.081776 -4.4182E-05 540.2719840664093 88.51 1.451 84.717 84.195 85.646 -3.7926 145 40 6 0 0 0 0.52027 1 17433 17433 25.399 2.2509 1 476960000 + 35836 15046 24112 24128 35307 35307 -0.006634551446268233 QEVEKEPG 8 Unmodified _QEVEKEPG_ 0 0 0 LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant;nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3 LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.223876953125 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 24.472 1 22.619 22.119 23.119 -1.8534 0 0 0 0.21323 1 3980 3980 14.582 0 1 35837 985 24113 24129 35308 35308 -0.0261138861579866 QEVERLAAQ 9 Unmodified _QEVERLAAQ_ 0 0 0 REV__ENSG00000173013|ENST00000310085|CCDC96 REV__ENSG00000173013|ENST00000310085|CCDC96 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2664794921875 2 522.277638 1042.54072 0.43878 0.00022917 -0.52904 -0.0002763 -0.090258 -4.714E-05 522.2775426432585 49.501 0.45409 49.501 49.232 49.686 0 18 12 2 0 0 0 0.48707 1 9359 9359 20.415 0 1 1006300 + 35838 18322 24114 24130 35309 35309 0.021153669495106442 QEVICLDS 8 Unmodified _QEVICLDS_ 0 0 0 RAD54L2|p.E258Lfs*29|1|0.1|ENSG00000164080|chr3:51630877-51630878|-/CTCA|frameshift_variant;ENST00000462377.1_1_3:51663425-51664469:+|nuORF;ENST00000487093.5_1_3:51624427-51671126:+|nuORF;RAD54L2|p.Q477Rfs*3|1|0.34|ENSG00000164080|chr3:51637250-51637250|C/-|frameshift_variant;RAD54L2|p.S1325Pfs*18|1|0.33|ENSG00000164080|chr3:51662984-51662984|C/-|frameshift_variant;ENSG00000164080|ENST00000684192|RAD54L2;RAD54L2|p.S296Yfs*37|1|0.33|ENSG00000164080|chr3:51633636-51633652|CAGCAGTGGCTTTGGCT/-|frameshift_variant RAD54L2|p.E258Lfs*29|1|0.1|ENSG00000164080|chr3:51630877-51630878|-/CTCA|frameshift_variant;RAD54L2|p.S1325Pfs*18|1|0.33|ENSG00000164080|chr3:51662984-51662984|C/-|frameshift_variant;RAD54L2|p.S296Yfs*37|1|0.33|ENSG00000164080|chr3:51633636-51633652|CAGCAGTGGCTTTGGCT/-|frameshift_variant RAD54L2|p.E258Lfs*29|1|0.1|ENSG00000164080|chr3:51630877-51630878|-/CTCA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7678527832031 2 453.715493 905.416433 NaN NaN NaN NaN NaN NaN NaN 56.95 1 54.055 53.555 54.555 -2.8944 0 0 0 0.19753 1 10924 10924 25.399 0.72543 1 35839 12856;5505;12857 24115 24131 35310 35310 -0.040058468621509746 QEVIITKF 8 Unmodified _QEVIITKF_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2645263671875 2 489.286943 976.559333 0.33406 0.00016345 -0.13423 -6.5677E-05 0.19983 9.7776E-05 489.28680108628686 108.27 0.79704 108.27 107.8 108.59 0 57 22 3 0 0 0 0.14695 1 21225 21225 53.833 19.431 1 7283700 35840 1453 24116 24132 35311 35311 0.07011528591374372 QEVIITKF 8 Unmodified _QEVIITKF_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2681884765625 2 489.286943 976.559333 -0.10429 -5.1027E-05 0.21719 0.00010627 0.1129 5.5239E-05 489.2869451135935 112.27 0.90195 107.81 107.35 108.25 -4.4538 69 25 4 0 0 0 0.082852 1 22090 22090 75.761 33.805 1 14525000 35841 1453 24116 24132 35312 35312 0.07011528591374372 QEVIITKF 8 Unmodified _QEVIITKF_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2566833496094 2 489.286943 976.559333 0.098537 4.8213E-05 0.065608 3.2101E-05 0.16415 8.0314E-05 489.2868888516035 112.36 0.87324 107.84 107.38 108.25 -4.5259 62 24 3 0 0 0 0.082852 2 21599 21599;21622 75.761 30.061 1 12990000 35842 1453 24116 24132 35313;35314 35313 0.07011528591374372 QEVIITKF 8 Unmodified _QEVIITKF_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26934814453125 2 489.286943 976.559333 0.34337 0.00016801 -0.20985 -0.00010268 0.13352 6.533E-05 489.2867933138062 112.07 0.9062 107.84 107.46 108.36 -4.2289 61 25 3 0 0 0 0.062334 2 21579 21570;21579 110.67 41.57 1 12096000 35843 1453 24116 24132 35315;35316 35316 0.07011528591374372 QEVITTVYSY 10 Unmodified _QEVITTVYSY_ 0 0 0 ZAN|p.G2397S|1|0.18|ENSG00000146839|chr7:100788098-100788098|G/A|missense_variant ZAN|p.G2397S|1|0.18|ENSG00000146839|chr7:100788098-100788098|G/A|missense_variant ZAN|p.G2397S|1|0.18|ENSG00000146839|chr7:100788098-100788098|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.27490234375 2 601.800611 1201.58667 NaN NaN NaN NaN NaN NaN NaN 92.229 1 88.421 87.921 88.921 -3.8083 0 0 0 0.22576 1 17670 17670 14.838 0.93222 1 35844 26589 24117 24133 35317 35317 -0.006060326588794851 QEVKKDLAY 9 Unmodified _QEVKKDLAY_ 0 0 0 REV__ENST00000367538.1_1_1:183441704-183485127:+|nuORF REV__ENST00000367538.1_1_1:183441704-183485127:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7677001953125 2 547.298039 1092.58152 0.064267 3.5173E-05 -0.34353 -0.00018801 -0.27927 -0.00015284 547.2979393920865 50.041 0.55801 47.16 46.905 47.463 -2.8811 34 15 3 0 0 0 0.55979 1 9544 9544 15.847 0.5987 1 4788100 + 35845 15493 24118 24134 35318 35318 0.038937082691290925 QEVNKMTPSNI 11 Unmodified _QEVNKMTPSNI_ 0 0 0 ENST00000466097.1_1_22:38042800-38046733:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1 ENST00000466097.1_1_22:38042800-38046733:+|nuORF ENST00000466097.1_1_22:38042800-38046733:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7503662109375 2 630.81627 1259.61799 NaN NaN NaN NaN NaN NaN NaN 92.339 1 88.53 88.03 89.03 -3.8083 0 0 0 0.21129 1 17693 17693 16.149 2.2431 1 35846 1928 24119 24135 35319 35319 -0.0014378289642991149 QEVNLTAV 8 Unmodified _QEVNLTAV_ 0 0 0 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23492431640625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 69.212 1 65.822 65.322 66.322 -3.3903 0 0 0 0.21404 1 13083 13083 13.906 0 1 35847 6949 24120 24136 35320 35320 0.019015056264720442 QEVQPITSY 9 Unmodified _QEVQPITSY_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2681274414062 2 532.766571 1063.51859 0.39277 0.00020926 0.4207 0.00022413 0.81347 0.00043339 532.7665857938097 77.306 0.79198 77.306 76.875 77.667 0 42 22 3 0 0 0 2.3519E-05 3 15013 14964;15013;15063 134.3 71.723 1 3497000 35848 5252 24121 24137 35321;35322;35323 35322 -0.010628575189002731 QEVQPITSY 9 Unmodified _QEVQPITSY_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2686767578125 2 532.766571 1063.51859 0.082974 4.4206E-05 0.38284 0.00020396 0.46581 0.00024817 532.766750758877 81.12 0.79747 77.563 77.095 77.892 -3.557 40 22 2 0 0 0 5.2769E-24 3 15815 15815;15864;15874 176.84 122.06 1 7211500 35849 5252 24121 24137 35324;35325;35326 35324 -0.010628575189002731 QEVQPITSY 9 Unmodified _QEVQPITSY_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.268310546875 2 532.766571 1063.51859 0.4188 0.00022312 -0.083313 -4.4386E-05 0.33548 0.00017873 532.7665260460833 81.4 0.70058 77.561 77.261 77.961 -3.8392 33 19 2 0 0 0 1.4304E-05 1 15443 15443 137.42 87.491 1 5047500 35850 5252 24121 24137 35327 35327 -0.010628575189002731 QEVQPITSY 9 Unmodified _QEVQPITSY_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2681884765625 2 532.766571 1063.51859 -0.14068 -7.4949E-05 0.52825 0.00028143 0.38757 0.00020648 532.766793096943 81.238 0.80202 77.551 77.178 77.98 -3.6879 37 22 2 0 0 0 2.3519E-05 3 15497 15450;15489;15497 134.3 84.363 1 6267900 35851 5252 24121 24137 35328;35329;35330 35330 -0.010628575189002731 QEVRKHLKG 9 Unmodified _QEVRKHLKG_ 0 0 0 nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1 nc|ENSG00000075275|Q9NYQ6|CELSR1 nc|ENSG00000075275|Q9NYQ6|CELSR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7763061523438 2 547.825089 1093.63563 NaN NaN NaN NaN NaN NaN NaN 34.563 1 32.347 31.847 32.847 -2.2158 0 0 0 0.23508 1 6059 6059 4.3292 0 1 35852 1514 24122 24138 35331 35331 0.09255345211340682 QEVRKIFFG 9 Unmodified _QEVRKIFFG_ 0 0 0 COL20A1|p.G1120Afs*17|1|0.32|ENSG00000101203|chr20:63325673-63325673|C/-|frameshift_variant;COL20A1|p.P1149Lfs*53|1|0.06|ENSG00000101203|chr20:63326135-63326135|C/-|frameshift_variant;ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1;ENST00000479501.5_1_20:61950534-61961007:+|nuORF COL20A1|p.G1120Afs*17|1|0.32|ENSG00000101203|chr20:63325673-63325673|C/-|frameshift_variant COL20A1|p.G1120Afs*17|1|0.32|ENSG00000101203|chr20:63325673-63325673|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2127990722656 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 92.569 1 88.76 88.26 89.26 -3.8083 0 0 0 0.23508 1 17739 17739 4.1895 0 1 35853 622 24123 24139 35332 35332 0.06217424605551969 QEVRKIFFG 9 Unmodified _QEVRKIFFG_ 0 0 0 COL20A1|p.G1120Afs*17|1|0.32|ENSG00000101203|chr20:63325673-63325673|C/-|frameshift_variant;COL20A1|p.P1149Lfs*53|1|0.06|ENSG00000101203|chr20:63326135-63326135|C/-|frameshift_variant;ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1;ENST00000479501.5_1_20:61950534-61961007:+|nuORF COL20A1|p.G1120Afs*17|1|0.32|ENSG00000101203|chr20:63325673-63325673|C/-|frameshift_variant COL20A1|p.G1120Afs*17|1|0.32|ENSG00000101203|chr20:63325673-63325673|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2127685546875 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 92.802 1 88.958 88.458 89.458 -3.844 0 0 0 0.23508 1 17785 17785 7.1017 0 1 35854 622 24123 24139 35333 35333 0.06217424605551969 QEVVGDYF 8 Unmodified _QEVVGDYF_ 0 0 0 NPR3|p.I432V|1|0.1|ENSG00000113389|chr5:32782896-32782896|A/G|missense_variant NPR3|p.I432V|1|0.1|ENSG00000113389|chr5:32782896-32782896|A/G|missense_variant NPR3|p.I432V|1|0.1|ENSG00000113389|chr5:32782896-32782896|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7220458984375 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 111.49 1 107.06 106.56 107.56 -4.4231 0 0 0 0.20896 1 21966 21966 18.135 0 1 35855 12707 24124 24140 35334 35334 -0.05078487127468634 QEVYAQVA 8 Unmodified _QEVYAQVA_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant;ENST00000394947.7_1_15:75702535-75702580:-|nuORF ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7678527832031 2 454.229625 906.444697 -0.23228 -0.00010551 0.38262 0.0001738 0.15034 6.829E-05 454.22976072430293 57.091 0.98362 54.197 53.822 54.806 -2.8944 55 27 3 0 0 0 0.57473 1 10924 10924 39.957 9.7325 1 4858000 35856 5980 24125 24141 35335 35335 -0.012267808905789934 QEVYAQVA 8 Unmodified _QEVYAQVA_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant;ENST00000394947.7_1_15:75702535-75702580:-|nuORF ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7604064941406 2 454.229625 906.444697 0.023394 1.0626E-05 0.12168 5.5272E-05 0.14508 6.5898E-05 454.22963079380384 57.458 0.99208 54.206 53.732 54.724 -3.2517 49 27 2 0 0 0 0.037002 1 10658 10658 92.822 48.415 1 2771000 35857 5980 24125 24141 35336 35336 -0.012267808905789934 QEVYAQVA 8 Unmodified _QEVYAQVA_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant;ENST00000394947.7_1_15:75702535-75702580:-|nuORF ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7654724121094 2 454.229625 906.444697 0.019506 8.8601E-06 0.19486 8.8511E-05 0.21437 9.7371E-05 454.22969950936186 57.443 1.0597 54.267 53.821 54.881 -3.1761 53 29 2 0 0 0 0.70215 1 10798 10798 22.736 6.8891 1 2821700 35858 5980 24125 24141 35337 35337 -0.012267808905789934 QEVYAQVA 8 Unmodified _QEVYAQVA_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant;ENST00000394947.7_1_15:75702535-75702580:-|nuORF ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 454.229625 906.444697 0.2073 9.4161E-05 0.049985 2.2704E-05 0.25728 0.00011687 454.22957048450354 54.129 1.0602 54.129 53.779 54.839 0 -0.070541 -0.00011938 NaN 92.822 51 29 2 NaN NaN NaN NaN 0 NaN NaN 0 2022500 35859 5980 24125 24141 -0.012267808905789934 QEWKQRRIQPV 11 Unmodified _QEWKQRRIQPV_ 0 0 0 ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910-4|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2 ENST00000498186.5_1_7:148514900-148581332:-|nuORF ENST00000498186.5_1_7:148514900-148581332:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2724914550781 3 489.944153 1466.81063 -0.19685 -9.6447E-05 -0.079927 -3.916E-05 -0.27678 -0.00013561 490.2786177159552 19.621 0.16913 18.296 18.247 18.416 -1.3251 6 4 2 0 0 0 0.81822 1 2998 2998 1.2148 0.70888 1 415000 35860 2385 24126 24142 35338 35338 0.09589720285725889 QEWRREYYLNL 11 Unmodified _QEWRREYYLNL_ 0 0 0 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3939208984375 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 124.47 1 124.47 123.97 124.97 0 0 0 0 0.23698 1 24544 24544 1.1933 0 1 + 35861 17904 24127 24143 35339 35339 0.01194003949353828 QEWRREYYLNL 11 Unmodified _QEWRREYYLNL_ 0 0 0 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3949584960938 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 153.03 1 153.03 152.53 153.53 0 0 0 0 0.23698 1 30658 30658 1.1933 0 1 + 35862 17904 24127 24143 35340 35340 0.01194003949353828 QEWRREYYLNL 11 Unmodified _QEWRREYYLNL_ 0 0 0 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.380615234375 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 153.07 1 148.3 147.8 148.8 -4.7684 0 0 0 0.23698 1 30416 30416 1.1933 0 1 + 35863 17904 24127 24143 35341 35341 0.01194003949353828 QEWRREYYLNL 11 Unmodified _QEWRREYYLNL_ 0 0 0 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3960571289062 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 117.89 1 113.28 112.78 113.78 -4.6106 0 0 0 0.23698 1 22623 22623 1.1933 0 1 + 35864 17904 24127 24143 35342 35342 0.01194003949353828 QEWRREYYLNL 11 Unmodified _QEWRREYYLNL_ 0 0 0 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3983154296875 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 121.35 1 116.66 116.16 117.16 -4.6873 0 0 0 0.23698 1 23296 23296 1.1933 0 1 + 35865 17904 24127 24143 35343 35343 0.01194003949353828 QEWRREYYLNL 11 Unmodified _QEWRREYYLNL_ 0 0 0 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3945922851562 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 171.89 1 166.98 166.48 167.48 -4.9149 0 0 0 0.23519 1 34070 34070 4.1895 0.90819 1 + 35866 17904 24127 24143 35344 35344 0.01194003949353828 QEWRREYYLNL 11 Unmodified _QEWRREYYLNL_ 0 0 0 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3935546875 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 124.11 1 119.52 119.02 120.02 -4.5926 0 0 0 0.23698 1 23883 23883 1.1933 0.12188 1 + 35867 17904 24127 24143 35345 35345 0.01194003949353828 QEWRREYYLNL 11 Unmodified _QEWRREYYLNL_ 0 0 0 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3934326171875 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 125.3 1 120.65 120.15 121.15 -4.6495 0 0 0 0.23698 1 24106 24106 1.1933 0 1 + 35868 17904 24127 24143 35346 35346 0.01194003949353828 QEWRREYYLNL 11 Unmodified _QEWRREYYLNL_ 0 0 0 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3908081054688 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 126.75 1 122.05 121.55 122.55 -4.6998 0 0 0 0.23698 1 24382 24382 1.1933 0.12188 1 + 35869 17904 24127 24143 35347 35347 0.01194003949353828 QEWRREYYLNL 11 Unmodified _QEWRREYYLNL_ 0 0 0 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 REV__nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3907470703125 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 160.08 1 154.82 154.32 155.32 -5.2526 0 0 0 0.23698 1 31063 31063 1.1933 0.84271 1 + 35870 17904 24127 24143 35348 35348 0.01194003949353828 QEWTFTLY 8 Unmodified _QEWTFTLY_ 0 0 0 nc|ENSG00000145506|Q969F2-2|NKD2;ENSG00000145506|ENST00000296849|NKD2;ENSG00000140807|ENST00000268459|NKD1 nc|ENSG00000145506|Q969F2-2|NKD2 nc|ENSG00000145506|Q969F2-2|NKD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7886352539062 2 544.258382 1086.50221 0.196 0.00010667 -1.4106 -0.00076771 -1.2146 -0.00066103 544.2574828335214 59.201 0.34746 55.996 55.753 56.1 -3.2052 14 9 2 0 0 0 0.95284 1 11058 11058 14.582 0 1 868710 35871 4325 24128 24144 35349 35349 -0.0375793868497567 QEYFAFKIREI 11 Unmodified _QEYFAFKIREI_ 0 0 0 REV__ENSG00000163935|ENST00000394752|SFMBT1 REV__ENSG00000163935|ENST00000394752|SFMBT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7745361328125 3 481.925877 1442.7558 0.013592 6.5501E-06 -0.67961 -0.00032752 -0.66602 -0.00032097 481.92552342291 33.855 0.52818 33.855 33.58 34.108 0 45 14 4 0 0 0 0.96173 1 6133 6133 4.1166 1.4854 1 8051400 + 35872 17630 24129 24145 35350 35350 0.05213288694471885 QEYFAFKIREI 11 Unmodified _QEYFAFKIREI_ 0 0 0 REV__ENSG00000163935|ENST00000394752|SFMBT1 REV__ENSG00000163935|ENST00000394752|SFMBT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 481.925877 1442.7558 -0.37766 -0.00018201 -0.058615 -2.8248E-05 -0.43628 -0.00021025 481.9257878787167 36.25 0.74107 33.856 33.451 34.192 -2.3938 0.00068807 0.00045238 NaN 4.1166 58 20 4 NaN NaN NaN NaN 0 NaN NaN 0 7819700 + 35873 17630 24129 24145 0.05213288694471885 QEYHIMSSCY 10 Unmodified _QEYHIMSSCY_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7551879882812 2 630.754824 1259.49509 NaN NaN NaN NaN NaN NaN NaN 44.39 1 44.39 43.89 44.89 0 0 0 0 0.22588 1 8327 8327 10.824 1.4408 1 35874 4558 24130 24146 35351 35351 -0.1242736261938262 QEYKEALEA 9 Unmodified _QEYKEALEA_ 0 0 0 nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.275390625 2 540.764029 1079.5135 0.54492 0.00029467 0.55911 0.00030235 1.104 0.00059702 540.7644271731479 49.178 0.42047 49.178 48.984 49.404 0 19 11 2 0 0 0 0.086396 1 9291 9291 60.074 6.2411 1 2091500 35875 1386 24131 24147 35352 35352 -0.023071613815318415 QEYKEALEA 9 Unmodified _QEYKEALEA_ 0 0 0 nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2661743164062 2 540.764029 1079.5135 0.016627 8.9913E-06 1.1109 0.00060073 1.1275 0.00060972 540.7646245253703 52.126 0.40948 49.244 49.004 49.414 -2.8824 20 11 2 0 0 0 0.12505 2 9934 9910;9934 47.749 5.9091 1 2094400 35876 1386 24131 24147 35353;35354 35354 -0.023071613815318415 QEYKEALEA 9 Unmodified _QEYKEALEA_ 0 0 0 nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.764029 1079.5135 0.027908 1.5092E-05 1.355 0.00073273 1.3829 0.00074782 540.7646189456262 52.325 0.52371 49.23 48.96 49.484 -3.0954 -0.0017803 0.00036226 NaN 60.074 28 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2064600 35877 1386 24131 24147 -0.023071613815318415 QEYKPNGDYF 10 Unmodified _QEYKPNGDYF_ 0 0 0 REV__ENSG00000073169|ENST00000380903|SELENOO REV__ENSG00000073169|ENST00000380903|SELENOO MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7521362304688 2 630.78021 1259.54587 0.74879 0.00047232 2.156 0.0013599 2.9048 0.0018323 630.7815633764429 80.93 0.39247 80.93 80.805 81.197 0 14 10 2 0 0 0 0.63858 1 15789 15789 17.113 3.2068 1 2674100 + 35878 14299 24132 24148 35355 35355 -0.07352373978528703 QEYNVRVA 8 Unmodified _QEYNVRVA_ 0 0 0 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000070770|ENST00000262506|CSNK2A2 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2557373046875 2 489.753798 977.493044 0.45715 0.00022389 0.89347 0.00043758 1.3506 0.00066147 489.7537462576308 44.041 0.82171 44.041 43.501 44.323 0 32 23 2 0 0 0 0.17453 1 8259 8259 48.346 10.372 1 2318300 35879 2053 24133 24149 35356 35356 0.0033971274932582674 QEYNVRVA 8 Unmodified _QEYNVRVA_ 0 0 0 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000070770|ENST00000262506|CSNK2A2 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2552490234375 2 489.753798 977.493044 0.06852 3.3558E-05 0.8705 0.00042633 0.93902 0.00045989 489.75384637998394 47.051 0.41255 44.21 44.006 44.419 -2.8409 22 11 3 0 0 0 0.10891 3 8875 8859;8875;8898 61.357 9.7761 1 2274500 35880 2053 24133 24149 35357;35358;35359 35358 0.0033971274932582674 QEYNVRVA 8 Unmodified _QEYNVRVA_ 0 0 0 nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000070770|ENST00000262506|CSNK2A2 nc|ENSG00000101266|P68400-2|CSNK2A1 nc|ENSG00000101266|P68400-2|CSNK2A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2554931640625 2 489.753798 977.493044 -0.33948 -0.00016626 0.63658 0.00031177 0.29709 0.0001455 489.7541073709418 47.07 0.52045 44.12 43.948 44.469 -2.9499 22 14 2 0 0 0 0.31517 1 8590 8590 36.044 1.9418 1 1425800 35881 2053 24133 24149 35360 35360 0.0033971274932582674 QEYPDNRY 8 Unmodified _QEYPDNRY_ 0 0 0 REV__ENSG00000065526|ENST00000375759|SPEN REV__ENSG00000065526|ENST00000375759|SPEN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.791015625 2 542.738345 1083.46214 0.037854 2.0545E-05 -0.29963 -0.00016262 -0.26178 -0.00014208 542.7382231668164 48.928 0.59101 45.929 45.616 46.207 -2.999 39 16 3 0 0 0 0.71273 1 8899 8899 12.532 0.89125 1 2268600 + 35882 14189 24134 24150 35361 35361 -0.07625485355583805 QEYPDNRY 8 Unmodified _QEYPDNRY_ 0 0 0 REV__ENSG00000065526|ENST00000375759|SPEN REV__ENSG00000065526|ENST00000375759|SPEN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7825317382812 2 542.738345 1083.46214 0.007191 3.9029E-06 0.49205 0.00026705 0.49924 0.00027096 542.7384761822179 48.88 1.1104 45.874 45.029 46.139 -3.0068 50 31 3 0 0 0 8448 1 8963 8963 2.643 2.643 1 3220000 + 35883 14189 24134 24150 35362 35362 -0.07625485355583805 QEYPDNRY 8 Unmodified _QEYPDNRY_ 0 0 0 REV__ENSG00000065526|ENST00000375759|SPEN REV__ENSG00000065526|ENST00000375759|SPEN MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.738345 1083.46214 0.65421 0.00035507 -0.35756 -0.00019406 0.29665 0.00016101 542.7381029243958 45.709 0.69527 45.709 45.343 46.038 0 -0.19405 -0.00024129 NaN 12.532 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4492500 + 35884 14189 24134 24150 -0.07625485355583805 QEYPDNRY 8 Unmodified _QEYPDNRY_ 0 0 0 REV__ENSG00000065526|ENST00000375759|SPEN REV__ENSG00000065526|ENST00000375759|SPEN MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.738345 1083.46214 0.13105 7.1124E-05 -0.32959 -0.00017888 -0.19855 -0.00010776 542.7382247711274 48.982 0.87656 46.101 45.645 46.522 -2.8811 0.19768 -0.00021093 NaN 12.532 47 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2494300 + 35885 14189 24134 24150 -0.07625485355583805 QEYPQAVQ 8 Unmodified _QEYPQAVQ_ 0 0 0 nc|ENSG00000216937|Q96M83-5|CCDC7 nc|ENSG00000216937|Q96M83-5|CCDC7 nc|ENSG00000216937|Q96M83-5|CCDC7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2460632324219 2 481.732532 961.45051 0.012946 6.2366E-06 0.087963 4.2374E-05 0.10091 4.8611E-05 481.7325855073097 33.265 1.9438 33.265 32.71 34.654 0 85 55 3 0 0 0 0.58903 1 6088 6088 16.942 16.942 1 3488300 35886 12598 24135 24151 35363 35363 -0.031756823789010014 QEYQREYA 8 Unmodified _QEYQREYA_ 0 0 0 REV__ENST00000406934.5_1_22:38246060-38259001:+|nuORF REV__ENST00000406934.5_1_22:38246060-38259001:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78857421875 2 543.74617 1085.47779 NaN NaN NaN NaN NaN NaN NaN 49.044 1 46.045 45.545 46.545 -2.999 0 0 0 0.21486 1 8962 8962 12.532 3.1841 1 + 35887 14668 24136 24152 35364 35364 -0.061531988385240766 QEYQRLNEV 9 Unmodified _QEYQRLNEV_ 0 0 0 nc|ENSG00000153237|Q8NFR7-3|CCDC148;ENST00000451554.1_1_2:159145303-159312956:-|nuORF;CCDC148|p.K420Nfs*15|2|0.39|ENSG00000153237|chr2:158220705-158220705|T/-|frameshift_variant;ENSG00000153237|ENST00000283233|CCDC148 nc|ENSG00000153237|Q8NFR7-3|CCDC148 nc|ENSG00000153237|Q8NFR7-3|CCDC148 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.26953125 2 589.793652 1177.57275 0.47606 0.00028077 -1.2402 -0.00073144 -0.76412 -0.00045067 589.7927167578903 79.719 1.1344 76.209 75.763 76.898 -3.5102 73 31 3 0 0 0 0.026883 1 15557 15557 106.94 33.972 1 10658000 35888 412 24137 24153 35365 35365 -0.008932653673355162 QEYSYEQS 8 Unmodified _QEYSYEQS_ 0 0 0 REV__nc|ENSG00000095303|P23219-4|PTGS1 REV__nc|ENSG00000095303|P23219-4|PTGS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.1407470703125 3 345.141816 1032.40362 NaN NaN NaN NaN NaN NaN NaN 66.963 1 63.855 63.355 64.355 -3.1086 0 0 0 0.23078 1 12985 12985 0.62683 0.21856 1 + 35889 14605 24138 24154 35366 35366 -0.11128586720724343 QEYYFWYLELN 11 Unmodified _QEYYFWYLELN_ 0 0 0 ENST00000519969.5_2_8:93966716-93977788:-|nuORF;ENST00000524107.5_2_8:93966716-93978097:-|nuORF;ENST00000521988.5_2_8:93966716-93978353:-|nuORF ENST00000519969.5_2_8:93966716-93977788:-|nuORF ENST00000519969.5_2_8:93966716-93977788:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6968383789062 3 523.241642 1566.7031 0.44812 0.00023448 -4.3619 -0.0022823 -3.9138 -0.0020478 523.2387129245782 155.05 0.17749 149.79 149.72 149.9 -5.2526 6 4 2 0 0 0 0.96165 1 30084 30084 2.4348 1.22 1 530030 35890 10830 24139 24155 35367 35367 -0.057587141589920066 QFFKKRVRRWI 11 Unmodified _QFFKKRVRRWI_ 0 0 0 ENSG00000118515|ENST00000367858|SGK1 ENSG00000118515|ENST00000367858|SGK1 ENSG00000118515|ENST00000367858|SGK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2623901367188 3 521.984283 1562.93102 NaN NaN NaN NaN NaN NaN NaN 164.47 1 159.68 159.18 160.18 -4.7898 0 0 0 0.23698 1 32873 32873 0.08335 0 1 35891 3042 24140 24156 35368 35368 0.17207173070028148 QFFRYLYHNVP 11 Unmodified _QFFRYLYHNVP_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000509825.1_1_4:85672578-85676547:-|nuORF nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3759155273438 2 742.377686 1482.74082 NaN NaN NaN NaN NaN NaN NaN 76.344 1 76.344 75.844 76.844 0 0 0 0 0.2367 1 14835 14835 2.9952 0 1 35892 5449 24141 24157 35369 35369 0.01875841617129481 QFFRYLYHNVP 11 Unmodified _QFFRYLYHNVP_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000509825.1_1_4:85672578-85676547:-|nuORF nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3750610351562 2 742.377686 1482.74082 NaN NaN NaN NaN NaN NaN NaN 124.04 1 119.46 118.96 119.96 -4.5757 0 0 0 0.22632 1 24457 24457 0.172 0 1 35893 5449 24141 24157 35370 35370 0.01875841617129481 QFFRYLYHNVP 11 Unmodified _QFFRYLYHNVP_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000509825.1_1_4:85672578-85676547:-|nuORF nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3800048828125 2 742.377686 1482.74082 NaN NaN NaN NaN NaN NaN NaN 166.6 1 161.62 161.12 162.12 -4.9811 0 0 0 0.22632 1 32675 32675 0.172 0 1 35894 5449 24141 24157 35371 35371 0.01875841617129481 QFFYEHNRFFY 11 Unmodified _QFFYEHNRFFY_ 0 0 0 REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2660522460938 3 533.245609 1596.715 NaN NaN NaN NaN NaN NaN NaN 87.896 1 84.145 83.645 84.645 -3.7501 0 0 0 0.22632 1 16818 16818 0.172 0.14579 1 + 35895 24714 24142 24158 35372 35372 -0.059490526251693154 QFGSRGTITD 10 Unmodified _QFGSRGTITD_ 0 0 0 ENST00000481805.1_1_10:81926537-81928838:-|nuORF;nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 ENST00000481805.1_1_10:81926537-81928838:-|nuORF;nc|ENSG00000122359|P50995-2|ANXA11 ENST00000481805.1_1_10:81926537-81928838:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2756958007812 2 541.26727 1080.51999 0.27215 0.00014731 -0.90288 -0.0004887 -0.63073 -0.00034139 541.2666240033168 128.06 0.60513 123.44 123.09 123.7 -4.6214 38 16 3 0 0 0 0.34409 1 25271 25271 3.5927 2.3778 1 3079900 35896 10383;3218 24143 24159 35373 35373 -0.017052234301445424 QFHECLFLQTL 11 Unmodified _QFHECLFLQTL_ 0 0 0 REV__ENST00000357997.9_1_12:133302655-133302799:-|nuORF REV__ENST00000357997.9_1_12:133302655-133302799:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2325439453125 3 460.232312 1377.67511 NaN NaN NaN NaN NaN NaN NaN 116.08 1 111.72 111.22 112.22 -4.3585 0 0 0 0.22632 1 22348 22348 1.4074 1.2354 1 + 35897 20832 24144 24160 35374 35374 0.0013768437991075189 QFKKICEEA 9 Unmodified _QFKKICEEA_ 0 0 0 nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49584731-49620353:+|nuORF nc|ENSG00000156958|Q01415-2|GALK2 nc|ENSG00000156958|Q01415-2|GALK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7772216796875 2 548.278792 1094.54303 0.28066 0.00015388 2.5174 0.0013803 2.7981 0.0015341 548.2798958711118 125.8 0.24688 121.15 121.05 121.3 -4.6495 9 6 2 0 0 0 0.35995 1 24220 24220 0.40827 0 1 587560 35898 5111 24145 24161 35375 35375 -0.00045920637035123946 QFPLMRVLFWF 11 Unmodified _QFPLMRVLFWF_ 0 0 0 ENST00000392350.7_1_2:190635870-190636011:-|nuORF ENST00000392350.7_1_2:190635870-190636011:-|nuORF ENST00000392350.7_1_2:190635870-190636011:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3973388671875 2 742.399576 1482.7846 NaN NaN NaN NaN NaN NaN NaN 82.738 1 82.738 82.238 83.238 0 0 0 0 0.23634 1 16126 16126 3.2813 0.28607 1 35899 9372 24146 24162 35376 35376 0.06251734789884722 QFPLMRVLFWF 11 Unmodified _QFPLMRVLFWF_ 0 0 0 ENST00000392350.7_1_2:190635870-190636011:-|nuORF ENST00000392350.7_1_2:190635870-190636011:-|nuORF ENST00000392350.7_1_2:190635870-190636011:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3986206054688 2 742.399576 1482.7846 NaN NaN NaN NaN NaN NaN NaN 87.592 1 83.865 83.365 84.365 -3.727 0 0 0 0.23018 1 17130 17130 8.1555 6.6736 1 35900 9372 24146 24162 35377 35377 0.06251734789884722 QFQHLRHL 8 Unmodified _QFQHLRHL_ 0 0 0 REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 117.91 1 113.5 113 114 -4.4088 0 0 0 0.21486 1 22690 22690 1.4819 0.28856 1 + 35901 14514 24147 24163 35378 35378 0.047508068684237514 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4169921875 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 108.58 1 108.58 108.08 109.08 0 0 0 0 0.23698 1 21353 21353 0.30703 0.30703 1 + 35902 20597 24148 24164 35379 35379 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4163818359375 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 112.15 1 112.15 111.65 112.65 0 0 0 0 0.23698 1 22063 22063 0 0 1 + 35903 20597 24148 24164 35380 35380 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.41552734375 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 116.26 1 116.26 115.76 116.76 0 0 0 0 0.23698 1 22890 22890 0 0 1 + 35904 20597 24148 24164 35381 35381 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.41552734375 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 141.7 1 141.7 141.2 142.2 0 0 0 0 0.23698 1 28242 28242 0 0 1 + 35905 20597 24148 24164 35382 35382 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4160766601562 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 151.33 1 151.33 150.83 151.83 0 0 0 0 0.23698 1 30305 30305 0 0 1 + 35906 20597 24148 24164 35383 35383 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4153442382812 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 152.85 1 152.85 152.35 153.35 0 0 0 0 0.23698 1 30619 30619 0 0 1 + 35907 20597 24148 24164 35384 35384 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4155883789062 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 163.11 1 163.11 162.61 163.61 0 0 0 0 0.23698 1 32848 32848 0 0 1 + 35908 20597 24148 24164 35385 35385 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.41259765625 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 103.56 1 99.339 98.839 99.839 -4.2183 0 0 0 0.23698 1 20363 20363 0.30703 0.30703 1 + 35909 20597 24148 24164 35386 35386 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.41650390625 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 116.74 1 112.26 111.76 112.76 -4.486 0 0 0 0.23698 1 23015 23015 0 0 1 + 35910 20597 24148 24164 35387 35387 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.4133911132812 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 172.77 1 167.98 167.48 168.48 -4.7898 0 0 0 0.23698 1 35211 35211 0.30703 0.03801 1 + 35911 20597 24148 24164 35388 35388 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4139404296875 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 120.1 1 115.45 114.95 115.95 -4.645 0 0 0 0.23698 1 23049 23049 0.30703 0.30703 1 + 35912 20597 24148 24164 35389 35389 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4152221679688 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 141.05 1 136.07 135.57 136.57 -4.9877 0 0 0 0.23698 1 27157 27157 0.30703 0.30703 1 + 35913 20597 24148 24164 35390 35390 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4168701171875 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 143.17 1 138.14 137.64 138.64 -5.0261 0 0 0 0.23698 1 27599 27599 0 0 1 + 35914 20597 24148 24164 35391 35391 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4179077148438 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 161.54 1 156.39 155.89 156.89 -5.1438 0 0 0 0.23698 1 31376 31376 0.26902 0.26902 1 + 35915 20597 24148 24164 35392 35392 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4150390625 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 165 1 160.02 159.52 160.52 -4.9811 0 0 0 0.23698 1 32221 32221 0 0 1 + 35916 20597 24148 24164 35393 35393 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.4158325195312 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 44.012 1 41.264 40.764 41.764 -2.7475 0 0 0 0.23698 1 7961 7961 0 0 1 + 35917 20597 24148 24164 35394 35394 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.4165649414062 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 55.069 1 51.932 51.432 52.432 -3.1377 0 0 0 0.23698 1 10212 10212 0 0 1 + 35918 20597 24148 24164 35395 35395 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.4157104492188 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 96.839 1 92.92 92.42 93.42 -3.9194 0 0 0 0.23698 1 18585 18585 0 0 1 + 35919 20597 24148 24164 35396 35396 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.4156494140625 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 142.08 1 137.21 136.71 137.71 -4.8678 0 0 0 0.23698 1 27413 27413 0.26902 0.26902 1 + 35920 20597 24148 24164 35397 35397 0.0007170087669692293 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.415283203125 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 147.05 1 142.05 141.55 142.55 -5 0 0 0 0.23698 1 28462 28462 0 0 1 + 35921 20597 24148 24164 35398 35398 0.0007170087669692293 QFRRFQEELRR 11 Unmodified _QFRRFQEELRR_ 0 0 0 REV__ENSG00000251692|ENST00000447419|PTX4 REV__ENSG00000251692|ENST00000447419|PTX4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2696533203125 3 522.28669 1563.83824 NaN NaN NaN NaN NaN NaN NaN 83.548 1 79.94 79.44 80.44 -3.6079 0 0 0 0.22632 1 16332 16332 1.4551 1.4289 1 + 35922 19832 24149 24165 35399 35399 0.07887623545980205 QFRVVRCW 8 Unmodified _QFRVVRCW_ 0 0 0 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7882080078125 2 547.289828 1092.5651 0.36986 0.00020242 -2.0348 -0.0011136 -1.665 -0.00091122 547.7898491804331 143.59 0.14157 138.69 138.61 138.75 -4.8982 5 3 2 0 0 0 8448 1 27719 27719 3.2813 0.78282 1 1339300 35923 7406 24150 24166 35400 35400 0.022523486220734412 QFRVVRCW 8 Unmodified _QFRVVRCW_ 0 0 0 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.289828 1092.5651 0.25422 0.00013913 -5.2246 -0.0028594 -4.9704 -0.0027202 547.2871687724828 143.56 0.10269 138.9 138.83 138.93 -4.656 0.10573 -0.0011873 NaN 3.2813 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 1949600 35924 7406 24150 24166 0.022523486220734412 QFTCNEGY 8 Unmodified _QFTCNEGY_ 0 0 0 nc|ENSG00000121904|Q7Z408|CSMD2;ENSG00000121904|ENST00000373381|CSMD2 nc|ENSG00000121904|Q7Z408|CSMD2 nc|ENSG00000121904|Q7Z408|CSMD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2477722167969 2 481.189642 960.364732 NaN NaN NaN NaN NaN NaN NaN 137.98 1 133.34 132.84 133.84 -4.6413 0 0 0 0.21486 1 27235 27235 10.183 1.5901 1 35925 3197 24151 24167 35401 35401 -0.11703590556066956 QFVIQIINRE 10 Unmodified _QFVIQIINRE_ 0 0 0 REV__CSMD3|p.R102I|1|0.12|ENSG00000164796|chr8:113314667-113314667|C/A|missense_variant REV__CSMD3|p.R102I|1|0.12|ENSG00000164796|chr8:113314667-113314667|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7708129882812 2 630.358962 1258.70337 0.70181 0.00044239 -4.2515 -0.00268 -3.5497 -0.0022376 630.8564231720078 162.41 0.13509 157.22 157.16 157.3 -5.1878 5 3 2 0 0 0 1.1319 1 31532 31532 0.063865 0.032455 1 6328400 + 35926 13593 24152 24168 35402 35402 0.08436750351506817 QFWAWLPRARC 11 Unmodified _QFWAWLPRARC_ 0 0 0 REV__ENSG00000186907|ENST00000335099|RTN4RL2 REV__ENSG00000186907|ENST00000335099|RTN4RL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7299499511719 3 478.580158 1432.71864 NaN NaN NaN NaN NaN NaN NaN 63.797 1 60.381 59.881 60.881 -3.4158 0 0 0 0.22632 1 11926 11926 3.0723 3.0461 1 + 35927 19063 24153 24169 35403 35403 0.019593386677115632 QFWFEFYL 8 Unmodified _QFWFEFYL_ 0 0 0 REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2685546875 2 590.279118 1178.54368 0.061161 3.6102E-05 1.6804 0.00099189 1.7415 0.001028 590.2805907804835 110.02 0.37938 105.64 105.44 105.82 -4.3776 14 10 2 0 0 0 0.82854 1 21689 21689 4.2837 3.4085 1 2405600 + 35928 17243 24154 24170 35404 35404 -0.03844757925662634 QFYGHNSYYFY 11 Unmodified _QFYGHNSYYFY_ 0 0 0 ENSG00000153790|ENST00000283905|C7orf31 ENSG00000153790|ENST00000283905|C7orf31 ENSG00000153790|ENST00000283905|C7orf31 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 496.8496398925781 3 496.878815 1487.61462 NaN NaN NaN NaN NaN NaN NaN 140.55 1 135.9 135.4 136.4 -4.6493 0 0 0 0.22632 1 27750 27750 0.026206 0 1 35929 4978 24155 24171 35405 35405 -0.10968709678809319 QFYNTEEY 8 Unmodified _QFYNTEEY_ 0 0 0 REV__MER4E1_dup202|chr3:141941172-141941730:+|1.118986753019194|0.0356289563194822|4.97|477.0|26|2|anti-sense REV__MER4E1_dup202|chr3:141941172-141941730:+|1.118986753019194|0.0356289563194822|4.97|477.0|26|2|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.780029296875 2 547.227279 1092.44001 0.3503 0.00019169 -1.9759 -0.0010812 -1.6256 -0.00088955 547.2260533556076 141.41 0.59933 136.54 136.22 136.82 -4.8677 36 16 3 0 0 0 0.81042 1 27274 27274 30.225 0 1 2913300 + 35930 23841 24156 24172 35406 35406 -0.10251709824001409 QGAALNLASL 10 Unmodified _QGAALNLASL_ 0 0 0 REV__ENSG00000176692|ENST00000649859|FOXC2 REV__ENSG00000176692|ENST00000649859|FOXC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72149658203125 2 479.271824 956.529095 0.044107 2.1139E-05 -0.146 -6.9973E-05 -0.10189 -4.8834E-05 479.2717087760866 64.608 0.48818 61.611 61.255 61.743 -2.9975 23 13 2 0 0 0 0.41575 1 12484 12484 17.113 3.2068 1 2602100 + 35931 18517 24157 24173 35407 35407 0.04909169926179402 QGAALNLASL 10 Unmodified _QGAALNLASL_ 0 0 0 REV__ENSG00000176692|ENST00000649859|FOXC2 REV__ENSG00000176692|ENST00000649859|FOXC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.271824 956.529095 0.22417 0.00010744 -0.36509 -0.00017498 -0.14093 -6.7543E-05 479.2715811628357 65.158 0.41801 61.7 61.369 61.787 -3.4581 0.0053778 -0.00016339 NaN 17.113 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2441800 + 35932 18517 24157 24173 0.04909169926179402 QGACHKAS 8 Unmodified _QGACHKAS_ 0 0 0 ENSG00000064999|ENST00000360359|ANKS1A ENSG00000064999|ENST00000360359|ANKS1A ENSG00000064999|ENST00000360359|ANKS1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 401.3540344238281 2 401.187237 800.359921 NaN NaN NaN NaN NaN NaN NaN 7.5301 1 6.4855 5.9855 6.9855 -1.0446 0 0 0 0.21486 1 649 649 0.6015 0 1 35933 1347 24158 24174 35408 35408 -0.048244299081716235 QGAGAKGP 8 Unmodified _QGAGAKGP_ 0 0 0 ENST00000222374.2_1_19:44126724-44127456:-|nuORF ENST00000222374.2_1_19:44126724-44127456:-|nuORF ENST00000222374.2_1_19:44126724-44127456:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.2371520996094 2 343.18502 684.355488 NaN NaN NaN NaN NaN NaN NaN 51.568 1 48.516 48.016 49.016 -3.0517 0 0 0 0.2396 1 9505 9505 0.12286 0 1 35934 8134 24159 24175 35409 35409 0.0006842894057399462 QGAHKHIKE 9 Unmodified _QGAHKHIKE_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6890258789062 2 524.28834 1046.56213 0.13522 7.0895E-05 0.85941 0.00045058 0.99463 0.00052147 524.2887279353122 19.064 0.62885 19.064 18.892 19.52 0 35 17 3 0 0 0 0.87511 1 3154 3154 1.6526 0.32309 1 4522400 35935 3871 24160 24176 35410 35410 0.04070796768905893 QGAHKHIKE 9 Unmodified _QGAHKHIKE_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 524.28834 1046.56213 0.16271 8.5305E-05 0.47009 0.00024646 0.6328 0.00033177 524.2884898640091 20.641 0.67092 19.244 18.863 19.534 -1.3966 0.10691 -0.0006735 NaN 1.6526 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3344100 35936 3871 24160 24176 0.04070796768905893 QGAHKHIKE 9 Unmodified _QGAHKHIKE_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 524.28834 1046.56213 -0.7292 -0.00038231 1.4008 0.00073441 0.67158 0.0003521 524.2889822922664 20.498 0.55992 19.113 18.916 19.476 -1.3847 -0.024109 0.00030239 NaN 1.6526 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3560100 35937 3871 24160 24176 0.04070796768905893 QGCKKIRF 8 Unmodified _QGCKKIRF_ 0 0 0 ENSG00000111536|ENST00000229134|IL26 ENSG00000111536|ENST00000229134|IL26 ENSG00000111536|ENST00000229134|IL26 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2582702636719 2 490.278929 978.543305 NaN NaN NaN NaN NaN NaN NaN 144.57 1 139.9 139.4 140.4 -4.6694 0 0 0 0.21452 1 28632 28632 13.508 0 1 35938 2626 24161 24177 35411 35411 0.05317543873491104 QGDTYWYHDEK 11 Unmodified _QGDTYWYHDEK_ 0 0 0 nc|ENSG00000160856|Q96P31-5|FCRL3;ENST00000494724.5_1_1:157667081-157670285:-|nuORF;nc|ENSG00000160856|Q96P31-4|FCRL3;ENST00000480682.5_1_1:157667440-157670285:-|nuORF;FCRL3|p.R272Gfs*3|6|0.31|ENSG00000160856|chr1:157697170-157697170|T/-|frameshift_variant;FCRL3|p.R272Kfs*16|1|0.31|ENSG00000160856|chr1:157697169-157697170|-/T|frameshift_variant;nc|ENSG00000160856|Q96P31-2|FCRL3;nc|ENSG00000160856|Q96P31-7|FCRL3;ENSG00000160856|ENST00000368184|FCRL3;nc|ENSG00000160856|Q96P31-3|FCRL3;nc|ENSG00000160856|Q96P31-6|FCRL3 nc|ENSG00000160856|Q96P31-5|FCRL3 nc|ENSG00000160856|Q96P31-5|FCRL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2368469238281 3 481.205479 1440.59461 NaN NaN NaN NaN NaN NaN NaN 33.144 1 30.928 30.428 31.428 -2.2158 0 0 0 0.22632 1 5766 5766 0.11104 0 1 35939 10561 24162 24178 35412 35412 -0.10806505409414058 QGEIYLND 8 Unmodified _QGEIYLND_ 0 0 0 REV__tr|U7T3N0|U7T3N0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00466PE=4SV=1 REV__tr|U7T3N0|U7T3N0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00466PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 952.4281616210938 1 951.441802 950.434526 0.2928 0.00027858 -0.60204 -0.00057281 -0.30924 -0.00029423 951.441282557266 54.618 1.0163 51.483 50.975 51.991 -3.1352 66 28 3 0 0 0 0.52597 1 10010 10010 26.884 0 1 39705000 + 35940 25369 24163 24179 35413 35413 -0.04267388615824075 QGGFTVWTGL 10 Unmodified _QGGFTVWTGL_ 0 0 0 REV__nc|ENSG00000069424|Q13303-2|KCNAB2 REV__nc|ENSG00000069424|Q13303-2|KCNAB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2704467773438 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 110.18 1 106 105.5 106.5 -4.1826 0 0 0 0.22583 1 21203 21203 13.906 0 1 + 35941 14241 24164 24180 35414 35414 -0.0005883007381726202 QGGGAIVQRA 10 Unmodified _QGGGAIVQRA_ 0 0 0 nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT;ENST00000497108.6_1_1:150825273-150849043:-|nuORF nc|ENSG00000143437|P27540-2|ARNT nc|ENSG00000143437|P27540-2|ARNT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7286682128906 2 478.76724 955.519927 NaN NaN NaN NaN NaN NaN NaN 64.817 1 61.534 61.034 62.034 -3.2832 0 0 0 0.15474 1 12174 12174 36.127 9.2434 1 35942 4487 24165 24181 35415 35415 0.04038821360506972 QGGGEEMASP 10 Unmodified _QGGGEEMASP_ 0 0 0 nc|ENSG00000165566|Q8N7J2-2|AMER2;ENSG00000165566|ENST00000515384|AMER2 nc|ENSG00000165566|Q8N7J2-2|AMER2 nc|ENSG00000165566|Q8N7J2-2|AMER2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2370300292969 2 481.697832 961.38111 0.035273 1.6991E-05 0.57705 0.00027796 0.61232 0.00029495 481.69789063045704 30.282 0.62883 30.282 30.13 30.759 0 21 17 2 0 0 0 0.84281 1 5509 5509 5.7319 0 1 880840 35943 5640 24166 24182 35416 35416 -0.10112509389978186 QGHALKSLV 9 Unmodified _QGHALKSLV_ 0 0 0 REV__ZNF614|p.K138Hfs*20|1|0.04|ENSG00000142556|chr19:52017186-52017187|-/TCTGAAAATG|frameshift_variant REV__ZNF614|p.K138Hfs*20|1|0.04|ENSG00000142556|chr19:52017186-52017187|-/TCTGAAAATG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.1901550292969 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 118.77 1 114.27 113.77 114.77 -4.502 0 0 0 0.23508 1 23419 23419 2.7352 0 1 + 35944 16676 24167 24183 35417 35417 0.07245180025699938 QGHFLRAS 8 Unmodified _QGHFLRAS_ 0 0 0 ENST00000216487.11_1_14:93154563-93154824:+|nuORF ENST00000216487.11_1_14:93154563-93154824:+|nuORF ENST00000216487.11_1_14:93154563-93154824:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2388000488281 2 458.243401 914.472249 NaN NaN NaN NaN NaN NaN NaN 47.447 1 44.578 44.078 45.078 -2.869 0 0 0 0.20294 1 8964 8964 23.148 6.2061 1 35945 8116 24168 24184 35418 35418 0.011591671603241593 QGIGKLASV 9 Unmodified _QGIGKLASV_ 0 0 0 ENST00000525722.1_1_11:811587-812833:+|nuORF;ENST00000532004.5_1_11:810000-812833:+|nuORF;ENST00000526222.5_1_11:810419-812833:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2 ENST00000525722.1_1_11:811587-812833:+|nuORF ENST00000525722.1_1_11:811587-812833:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2356872558594 2 436.763635 871.512717 -0.0047102 -2.0572E-06 -0.030653 -1.3388E-05 -0.035363 -1.5445E-05 436.763581066538 70.798 0.55261 70.798 70.521 71.073 0 21 15 2 0 0 0 0.34246 1 13693 13693 33.445 5.8161 1 1717900 35946 6523 24169 24185 35419 35419 0.071820887600893 QGIGKLASV 9 Unmodified _QGIGKLASV_ 0 0 0 ENST00000525722.1_1_11:811587-812833:+|nuORF;ENST00000532004.5_1_11:810000-812833:+|nuORF;ENST00000526222.5_1_11:810419-812833:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2 ENST00000525722.1_1_11:811587-812833:+|nuORF ENST00000525722.1_1_11:811587-812833:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.763635 871.512717 -0.22624 -9.8813E-05 0.12194 5.3258E-05 -0.1043 -4.5555E-05 436.76370026270735 73.817 0.48446 70.452 70.191 70.675 -3.3643 -0.12757 0.00012843 NaN 33.445 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1316800 35947 6523 24169 24185 0.071820887600893 QGIGKLASV 9 Unmodified _QGIGKLASV_ 0 0 0 ENST00000525722.1_1_11:811587-812833:+|nuORF;ENST00000532004.5_1_11:810000-812833:+|nuORF;ENST00000526222.5_1_11:810419-812833:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2 ENST00000525722.1_1_11:811587-812833:+|nuORF ENST00000525722.1_1_11:811587-812833:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 436.763635 871.512717 0.15527 6.7818E-05 0.043672 1.9075E-05 0.19895 8.6892E-05 436.76365303549693 74.189 0.41294 70.513 70.276 70.689 -3.6764 -0.066883 6.0061E-05 NaN 33.445 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1110200 35948 6523 24169 24185 0.071820887600893 QGIQLKSV 8 Unmodified _QGIQLKSV_ 0 0 0 ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2353210449219 2 436.763635 871.512717 0.19475 8.506E-05 -0.1797 -7.8487E-05 0.015049 6.5729E-06 436.7634966219397 74.15 0.62839 70.556 70.187 70.815 -3.594 24 17 2 0 0 0 0.70215 1 14069 14069 29.082 0 1 983250 35949 2373 24170 24186 35420 35420 0.071820887600893 QGIVHGTYS 9 Unmodified _QGIVHGTYS_ 0 0 0 tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1 tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1 tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2410888671875 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 81.906 1 78.218 77.718 78.718 -3.6879 0 0 0 0.22251 1 15609 15609 16.942 2.3606 1 35950 26156 24171 24187 35421 35421 -0.015319761419959832 QGKHIPWR 8 Unmodified _QGKHIPWR_ 0 0 0 KIF5A|p.F34Sfs*72|1|0.38|ENSG00000155980|chr12:57550369-57550369|T/-|frameshift_variant KIF5A|p.F34Sfs*72|1|0.38|ENSG00000155980|chr12:57550369-57550369|T/-|frameshift_variant KIF5A|p.F34Sfs*72|1|0.38|ENSG00000155980|chr12:57550369-57550369|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.1592102050781 3 341.194521 1020.56173 NaN NaN NaN NaN NaN NaN NaN 121.49 1 121.49 120.99 121.99 0 0 0 0 0.2386 1 23949 23949 0.0082765 0 1 35951 12003 24172 24188 35422 35422 0.05227421839697399 QGKKKRKKKRL 11 Unmodified _QGKKKRKKKRL_ 0 0 0 nc|ENSG00000170703|Q8N841-3|TTLL6;ENSG00000170703|ENST00000393382|TTLL6 nc|ENSG00000170703|Q8N841-3|TTLL6 nc|ENSG00000170703|Q8N841-3|TTLL6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 699.0103759765625 2 699.480611 1396.94667 NaN NaN NaN NaN NaN NaN NaN 167.48 1 167.48 166.98 167.98 0 0 0 0 0.22632 1 34226 34226 0.00056442 0 1 35952 6091 24173 24189 35423 35423 0.26407459587062476 QGLDSLTPP 9 Unmodified _QGLDSLTPP_ 0 0 0 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2459411621094 2 464.242732 926.470912 0.37814 0.00017555 -0.4012 -0.00018625 -0.023057 -1.0704E-05 464.24247104930464 120.03 1.0813 115.57 115.16 116.24 -4.467 68 30 3 0 0 0 0.31714 1 23216 23216 30.637 0 1 12583000 + 35953 15389 24174 24190 35424 35424 0.004734882808861585 QGLIKKNK 8 Unmodified _QGLIKKNK_ 0 0 0 REV__ENST00000283233.9_2_2:159077133-159107416:-|nuORF REV__ENST00000283233.9_2_2:159077133-159107416:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 13.222 1 12.102 11.602 12.602 -1.1206 0 0 0 0.21486 1 1651 1651 0.40072 0 1 + 35954 20319 24175 24191 35425 35425 0.11986056922410171 QGLPRQVY 8 Unmodified _QGLPRQVY_ 0 0 0 REV__ENSG00000204450|ENST00000533122|TRIM64 REV__ENSG00000204450|ENST00000533122|TRIM64 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2505798339844 2 480.766709 959.518865 NaN NaN NaN NaN NaN NaN NaN 151.47 1 146.29 145.79 146.79 -5.1759 0 0 0 0.21486 1 29357 29357 8.5933 1.304 1 + 35955 19537 24176 24192 35426 35426 0.03748606991609904 QGNSFFVM 8 Unmodified _QGNSFFVM_ 0 0 0 nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF;P2RX7|p.R178Gfs*5|1|0.45|ENSG00000089041|chr12:121162514-121162514|C/-|frameshift_variant;nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7 nc|ENSG00000089041|Q99572-3|P2RX7 nc|ENSG00000089041|Q99572-3|P2RX7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2474670410156 2 465.212921 928.411288 NaN NaN NaN NaN NaN NaN NaN 52.639 1 49.544 49.044 50.044 -3.0954 0 0 0 0.23711 1 9720 9720 0.62683 0.50396 1 35956 1745 24177 24193 35427 35427 -0.05578105934114319 QGNVWWFA 8 Unmodified _QGNVWWFA_ 0 0 0 REV__ENSG00000166743|ENST00000520010|ACSM1 REV__ENSG00000166743|ENST00000520010|ACSM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.0466613769531 3 336.495977 1006.4661 -0.4891 -0.00016458 -1.0047 -0.00033807 -1.4938 -0.00050265 336.4957195353986 126.06 1.5641 121.41 120.57 122.13 -4.6495 79 43 3 0 0 0 1.0265 1 24293 24293 0 0 1 2337400 + 35957 17867 24178 24194 35428 35428 -0.03687351071209832 QGPAGGRL 8 Unmodified _QGPAGGRL_ 0 0 0 REV__ENSG00000158008|ENST00000374280|EXTL1 REV__ENSG00000158008|ENST00000374280|EXTL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.21002197265625 2 378.211569 754.408586 NaN NaN NaN NaN NaN NaN NaN 60.567 1 60.567 60.067 61.067 0 0 0 0 0.23366 1 11613 11613 0.62683 0 1 + 35958 17317 24179 24195 35429 35429 0.021558067232263056 QGPSIFQIKEL 11 Unmodified _QGPSIFQIKEL_ 0 0 0 REV__ARHGAP5|p.Y502Mfs*3|1|0.31|ENSG00000100852|chr14:32092168-32092168|T/-|frameshift_variant REV__ARHGAP5|p.Y502Mfs*3|1|0.31|ENSG00000100852|chr14:32092168-32092168|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7770385742188 2 630.353345 1258.69214 NaN NaN NaN NaN NaN NaN NaN 113.81 1 113.81 113.31 114.31 0 0 0 0 0.23476 1 22381 22381 4.5289 1.5336 1 + 35959 13103 24180 24196 35430 35430 0.07313928257372027 QGQDIGIHQA 10 Unmodified _QGQDIGIHQA_ 0 0 0 REV__PRICKLE2|p.G512Afs*16|1|0.13|ENSG00000163637|chr3:64146955-64146955|C/-|frameshift_variant REV__PRICKLE2|p.G512Afs*16|1|0.13|ENSG00000163637|chr3:64146955-64146955|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2669677734375 2 533.767437 1065.52032 0.55597 0.00029676 -0.28472 -0.00015198 0.27125 0.00014478 533.7669325854663 34.198 0.48067 32.051 31.742 32.222 -2.1468 19 13 2 0 0 0 0.85223 1 6004 6004 18.146 9.9908 1 645730 + 35960 17595 24181 24197 35431 35431 -0.009818037103059396 QGQRVAEQ 8 Unmodified _QGQRVAEQ_ 0 0 0 REV__ENSG00000168907|ENST00000397272|PLA2G4F REV__ENSG00000168907|ENST00000397272|PLA2G4F MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23773193359375 2 458.235773 914.456993 NaN NaN NaN NaN NaN NaN NaN 46.299 1 43.433 42.933 43.933 -2.8666 0 0 0 0.20896 1 8424 8424 18.135 0 1 + 35961 18064 24182 24198 35432 35432 -0.0036574442752908 QGSASCGPTGP 11 Unmodified _QGSASCGPTGP_ 0 0 0 REV__nc|ENSG00000241553|P59998-3|ARPC4 REV__nc|ENSG00000241553|P59998-3|ARPC4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.254638671875 2 481.205824 960.397095 NaN NaN NaN NaN NaN NaN NaN 81.969 1 78.13 77.63 78.63 -3.8392 0 0 0 0.22501 1 15567 15567 12.241 1.4167 1 + 35962 24289 24183 24199 35433 35433 -0.08468803153073168 QGSGNHDEAQ 10 Unmodified _QGSGNHDEAQ_ 0 0 0 REV__ENST00000392811.6_1_7:150974307-150974490:-|nuORF REV__ENST00000392811.6_1_7:150974307-150974490:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2698974609375 2 521.712859 1041.41116 0.21977 0.00011466 -0.15203 -7.9315E-05 0.067743 3.5342E-05 521.7123878889909 53.063 1.6386 53.063 52.43 54.068 0 148 45 4 0 0 0 0.70381 1 10150 10150 10.8 1.4164 1 29407000 + 35963 21226 24184 24200 35434 35434 -0.10788434400433289 QGSSGRSA 8 Unmodified _QGSSGRSA_ 0 0 0 ENST00000507543.5_1_4:183836720-183838488:-|nuORF;ENST00000509757.5_1_4:183837834-183838521:-|nuORF ENST00000507543.5_1_4:183836720-183838488:-|nuORF ENST00000507543.5_1_4:183836720-183838488:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2190856933594 2 375.180466 748.34638 NaN NaN NaN NaN NaN NaN NaN 55.936 1 55.936 55.436 56.436 0 0 0 0 0.2396 1 10682 10682 0.12286 0 1 35964 10702 24185 24201 35435 35435 -0.03785964415772014 QGVAMGMKFI 10 Unmodified _QGVAMGMKFI_ 0 0 0 ENST00000515804.1_1_5:72853376-72858706:-|nuORF;ENST00000509433.1_1_5:72858415-72858706:-|nuORF;ENSG00000164331|ENST00000296785|ANKRA2 ENST00000515804.1_1_5:72853376-72858706:-|nuORF ENST00000515804.1_1_5:72853376-72858706:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.268798828125 2 541.28028 1080.54601 NaN NaN NaN NaN NaN NaN NaN 94.4 1 90.556 90.056 91.056 -3.844 0 0 0 2.8426 1 18110 18110 10.151 1.995 1 35965 10792 24186 24202 35436 35436 0.008956312161444657 QGVVYEDL 8 Unmodified _QGVVYEDL_ 0 0 0 REV__tr|U7T0U3|U7T0U3_FUSNUATP-dependentClpproteaseATP-bindingsubunitClpXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpXPE=3SV=1 REV__tr|U7T0U3|U7T0U3_FUSNUATP-dependentClpproteaseATP-bindingsubunitClpXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpXPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5268859863281 2 461.729458 921.444362 NaN NaN NaN NaN NaN NaN NaN 104.47 1 100.12 99.622 100.62 -4.346 0 0 0 0.19954 1 20014 20014 24.674 10.092 1 + 35966 25279 24187 24203 35437 35437 -0.019502006104403335 QHFDALAP 8 Unmodified _QHFDALAP_ 0 0 0 REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant REV__NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 300.1519470214844 3 300.152099 897.434466 NaN NaN NaN NaN NaN NaN NaN 115.18 1 110.63 110.13 111.13 -4.555 0 0 0 0.21486 1 22113 22113 0.45834 0 1 + 35967 17751 24188 24204 35438 35438 -0.01835343825155178 QHFSLAMS 8 Unmodified _QHFSLAMS_ 0 0 0 nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B;SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant;SETD1B|p.L1532Ffs*35|1|0.12|ENSG00000139718|chr12:121823172-121823173|-/T|frameshift_variant;SETD1B|p.Q1589Sfs*11|3|0.38|ENSG00000139718|chr12:121823338-121823338|C/-|frameshift_variant;SETD1B|p.N80Tfs*26|1|0.37|ENSG00000139718|chr12:121805178-121805178|A/-|frameshift_variant;SETD1B|p.S561Rfs*47|1|0.46|ENSG00000139718|chr12:121810620-121810620|C/-|frameshift_variant nc|ENSG00000139718|Q9UPS6-2|SETD1B nc|ENSG00000139718|Q9UPS6-2|SETD1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.1572265625 3 307.481339 919.422187 -0.48111 -0.00014793 1.2343 0.00037951 0.75315 0.00023158 307.48176535437256 96.976 1.2188 96.976 96.387 97.605 0 66 34 3 0 0 0 0.88282 1 18927 18927 0.40072 0 1 3623600 35968 4261 24189 24205 35439 35439 -0.04074703559831505 QHHPDRPC 8 Unmodified _QHHPDRPC_ 0 0 0 REV__ENST00000249883.9_1_3:134075497-134075785:-|nuORF REV__ENST00000249883.9_1_3:134075497-134075785:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 330.9967956542969 3 330.483854 988.429732 -0.76853 -0.00025399 -0.14596 -4.8237E-05 -0.91449 -0.00030222 330.4837590701344 48.422 1.2813 45.472 44.915 46.196 -2.9499 63 36 2 0 0 0 1.027 1 8851 8851 3.2813 3.2813 1 1017700 + 35969 20108 24190 24206 35440 35440 -0.06494551239563862 QHKLLVDEP 9 Unmodified _QHKLLVDEP_ 0 0 0 REV__nc|ENSG00000088367|Q9H4G0-4|EPB41L1 REV__nc|ENSG00000088367|Q9H4G0-4|EPB41L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 82.949 1 82.949 82.449 83.449 0 0 0 0 0.23508 1 16170 16170 2.4985 0 1 + 35970 14513 24191 24207 35441 35441 0.0461712798901317 QHKPEVVEI 9 Unmodified _QHKPEVVEI_ 0 0 0 ENSG00000175595|ENST00000311895|ERCC4;ERCC4|p.K632Nfs*3|1|0.14|ENSG00000175595|chr16:13937846-13937846|A/-|frameshift_variant;nc|ENSG00000175595|Q92889-2|ERCC4 ENSG00000175595|ENST00000311895|ERCC4 ENSG00000175595|ENST00000311895|ERCC4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 130.65 1 126.02 125.52 126.52 -4.6359 0 0 0 0.23508 1 25746 25746 2.4985 0.21571 1 35971 6423 24192 24208 35442 35442 0.0461712798901317 QHLITYRER 9 Unmodified _QHLITYRER_ 0 0 0 REV__ENST00000556584.5_1_14:50131352-50154906:-|nuORF REV__ENST00000556584.5_1_14:50131352-50154906:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.2999267578125 3 405.891278 1214.652 0.070217 2.85E-05 0.079477 3.2259E-05 0.14969 6.0759E-05 405.89129016509037 29.923 0.45051 27.849 27.624 28.074 -2.0743 28 12 3 0 0 0 0.88284 1 5073 5073 2.4985 1.722 1 1290800 + 35972 14715 24193 24209 35443 35443 0.053264263774508436 QHLITYRER 9 Unmodified _QHLITYRER_ 0 0 0 REV__ENST00000556584.5_1_14:50131352-50154906:-|nuORF REV__ENST00000556584.5_1_14:50131352-50154906:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 405.891278 1214.652 0.048505 1.9688E-05 -0.053563 -2.1741E-05 -0.0050585 -2.0532E-06 405.89111851162676 28.004 0.41192 28.004 27.768 28.18 0 0.12322 0.00012914 NaN 2.4985 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1143900 + 35973 14715 24193 24209 0.053264263774508436 QHLLARELV 9 Unmodified _QHLLARELV_ 0 0 0 ATP2C2|p.E482Rfs*13|1|0.43|ENSG00000064270|chr16:84446364-84446364|A/-|frameshift_variant;ATP2C2|p.Y727Tfs*11|2|0.26|ENSG00000064270|chr16:84459146-84459146|T/-|frameshift_variant;ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;nc|ENSG00000064270|O75185-3|ATP2C2 ATP2C2|p.E482Rfs*13|1|0.43|ENSG00000064270|chr16:84446364-84446364|A/-|frameshift_variant ATP2C2|p.E482Rfs*13|1|0.43|ENSG00000064270|chr16:84446364-84446364|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21673583984375 3 360.217102 1077.62948 NaN NaN NaN NaN NaN NaN NaN 154.88 1 150.1 149.6 150.6 -4.7791 0 0 0 0.23508 1 30788 30788 1.0715 0 1 35974 269 24194 24210 35444 35444 0.0937682697983746 QHLTKETA 8 Unmodified _QHLTKETA_ 0 0 0 ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant;ANKRD50|p.G1144Wfs*12|1|0.39|ENSG00000151458|chr4:124669847-124669848|-/A|frameshift_variant;ANKRD50|p.P1235Hfs*8|2|0.36|ENSG00000151458|chr4:124669573-124669573|G/-|frameshift_variant;nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50 ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25103759765625 2 464.248349 926.482145 -0.2504 -0.00011625 0.18396 8.5402E-05 -0.066444 -3.0846E-05 464.2483655171451 41.443 1.1378 38.809 38.396 39.534 -2.6348 84 32 4 0 0 0 0.71273 1 7782 7782 12.532 2.4576 1 11160000 35975 164 24195 24211 35445 35445 0.015963103750436858 QHNGAYAL 8 Unmodified _QHNGAYAL_ 0 0 0 PIGO|p.R615Q|1|0.31|ENSG00000165282|chr9:35092043-35092043|C/T|missense_variant PIGO|p.R615Q|1|0.31|ENSG00000165282|chr9:35092043-35092043|C/T|missense_variant PIGO|p.R615Q|1|0.31|ENSG00000165282|chr9:35092043-35092043|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21575927734375 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 67.055 1 67.055 66.555 67.555 0 0 0 0 0.21486 1 12956 12956 10.183 0 1 35976 12787 24196 24212 35446 35446 -0.027245144849530334 QHQEEQMHPP 10 Unmodified _QHQEEQMHPP_ 0 0 0 REV__ENSG00000173588|ENST00000397809|CEP83 REV__ENSG00000173588|ENST00000397809|CEP83 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7725219726562 2 630.774936 1259.53532 NaN NaN NaN NaN NaN NaN NaN 43.45 1 43.45 42.95 43.95 0 0 0 0 2.8426 1 8139 8139 1.9275 0 1 + 35977 18362 24197 24213 35447 35447 -0.08406679904601333 QHRILHHRRG 10 Unmodified _QHRILHHRRG_ 0 0 0 REV__nc|ENSG00000167528|Q96N77-2|ZNF641 REV__nc|ENSG00000167528|Q96N77-2|ZNF641 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2279357910156 3 437.253544 1308.7388 NaN NaN NaN NaN NaN NaN NaN 117.59 1 113.18 112.68 113.68 -4.4088 0 0 0 2.8426 1 22631 22631 0.69767 0.65388 1 + 35978 17936 24198 24214 35448 35448 0.09678270442532266 QHRLCHLLRHR 11 Unmodified _QHRLCHLLRHR_ 0 0 0 ENST00000377424.8_1_1:9098058-9099617:-|nuORF ENST00000377424.8_1_1:9098058-9099617:-|nuORF ENST00000377424.8_1_1:9098058-9099617:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26287841796875 3 490.277472 1467.81059 NaN NaN NaN NaN NaN NaN NaN 53.215 1 50.119 49.619 50.619 -3.0954 0 0 0 0.22632 1 9837 9837 0.50596 0 1 35979 9263 24199 24215 35449 35449 0.0953944180473627 QHRLPEPQHAP 11 Unmodified _QHRLPEPQHAP_ 0 0 0 REV__ENST00000397265.7_1_12:674551-719530:-|nuORF REV__ENST00000397265.7_1_12:674551-719530:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22857666015625 3 437.230182 1308.66872 NaN NaN NaN NaN NaN NaN NaN 83.489 1 79.881 79.381 80.381 -3.6079 0 0 0 0.22632 1 16320 16320 3.0723 1.1659 1 + 35980 21299 24200 24216 35450 35450 0.02672927263438396 QHRSIQQL 8 Unmodified _QHRSIQQL_ 0 0 0 REV__nc|ENSG00000179262|P54725-3|RAD23A REV__nc|ENSG00000179262|P54725-3|RAD23A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.16973876953125 3 337.189435 1008.54648 NaN NaN NaN NaN NaN NaN NaN 17.39 1 17.39 16.89 17.89 0 0 0 0 0.21486 1 2753 2753 1.6526 0 1 + 35981 18648 24201 24217 35451 35451 0.04254510251860211 QHRSYHIWEQW 11 Unmodified _QHRSYHIWEQW_ 0 0 0 REV__ENST00000552329.1_3_12:102111123-102117010:+|nuORF REV__ENST00000552329.1_3_12:102111123-102117010:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.693115234375 3 523.916375 1568.72729 NaN NaN NaN NaN NaN NaN NaN 131.36 1 126.59 126.09 127.09 -4.7725 0 0 0 0.22632 1 25289 25289 0.50596 0.47975 1 + 35982 22944 24202 24218 35452 35452 -0.03432016162105356 QHSFTRGF 8 Unmodified _QHSFTRGF_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2;ENST00000530363.5_1_16:81161532-81175087:-|nuORF;ENST00000533478.5_1_16:81157348-81174942:-|nuORF nc|ENSG00000166473|Q7Z442|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.267333984375 2 490.240858 978.467164 0.52402 0.0002569 -1.1983 -0.00058748 -0.67432 -0.00033058 490.24017135547354 118.05 0.75067 113.44 112.99 113.74 -4.6106 29 20 2 0 0 0 0.71273 1 22592 22592 12.532 1.7076 1 4311300 35983 12440 24203 24219 35453 35453 -0.022931367022806626 QHSGPFPSV 9 Unmodified _QHSGPFPSV_ 0 0 0 ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD ENSG00000105251|ENST00000543264|SHD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7362365722656 2 478.235242 954.45593 0.042413 2.0283E-05 0.10477 5.0106E-05 0.14718 7.0389E-05 478.23517891422085 97.83 0.9046 93.732 93.186 94.091 -4.0978 44 25 3 0 0 0 0.33512 1 19181 19181 10.899 4.5075 1 3037000 35984 2291 24204 24220 35454 35454 -0.02311958796417457 QHSQNPRFYHK 11 Unmodified _QHSQNPRFYHK_ 0 0 0 ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENSG00000132522|ENST00000380728|GPS2;ENST00000573807.5_1_17:7216077-7216773:-|nuORF ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF ENST00000573807.5_1_17:7216077-7216773:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2420959472656 3 481.24097 1440.70108 NaN NaN NaN NaN NaN NaN NaN 88.118 1 88.118 87.618 88.618 0 0 0 0 0.22632 1 17195 17195 0.026206 0 1 35985 11425;11440 24205 24221 35455 35455 -0.0016428533358521236 QHSQNPRFYHK 11 Unmodified _QHSQNPRFYHK_ 0 0 0 ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENSG00000132522|ENST00000380728|GPS2;ENST00000573807.5_1_17:7216077-7216773:-|nuORF ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF ENST00000573807.5_1_17:7216077-7216773:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24176025390625 3 481.24097 1440.70108 0.22682 0.00010916 1.6382 0.00078836 1.865 0.00089751 481.24186507049046 74.16 1.149 70.483 69.614 70.763 -3.6764 45 32 2 0 0 0 0.62806 1 13989 13989 0.026206 0 1 1690200 35986 11425;11440 24205 24221 35456 35456 -0.0016428533358521236 QHSQNPRFYHK 11 Unmodified _QHSQNPRFYHK_ 0 0 0 ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENSG00000132522|ENST00000380728|GPS2;ENST00000573807.5_1_17:7216077-7216773:-|nuORF ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF ENST00000573807.5_1_17:7216077-7216773:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24224853515625 3 481.24097 1440.70108 0.30889 0.00014865 1.4016 0.0006745 1.7105 0.00082315 481.2417715126485 74.138 1.0229 70.544 69.758 70.781 -3.594 73 28 3 0 0 0 0.62806 1 14031 14031 0.03141 0 1 3378500 35987 11425;11440 24205 24221 35457 35457 -0.0016428533358521236 QHSQNPRFYHK 11 Unmodified _QHSQNPRFYHK_ 0 0 0 ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENSG00000132522|ENST00000380728|GPS2;ENST00000573807.5_1_17:7216077-7216773:-|nuORF ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF ENST00000573807.5_1_17:7216077-7216773:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2420959472656 3 481.24097 1440.70108 NaN NaN NaN NaN NaN NaN NaN 58.229 1 55.024 54.524 55.524 -3.2052 0 0 0 0.22632 1 10863 10863 0.026206 0 1 35988 11425;11440 24205 24221 35458 35458 -0.0016428533358521236 QHTGQPPG 8 Unmodified _QHTGQPPG_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ENST00000570320.5_1_16:24931453-24947070:-|nuORF;nc|ENSG00000140750|Q68EM7-7|ARHGAP17;ENST00000575283.5_1_16:24931453-24951019:-|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.10675048828125 2 411.198659 820.382765 NaN NaN NaN NaN NaN NaN NaN 104.16 1 99.945 99.445 100.45 -4.2183 0 0 0 0.21486 1 20486 20486 2.5775 0 1 35989 4323 24206 24222 35459 35459 -0.03461087519042394 QHTRADRY 8 Unmodified _QHTRADRY_ 0 0 0 REV__ENST00000578904.1_1_17:80208040-80213403:-|nuORF REV__ENST00000578904.1_1_17:80208040-80213403:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6841430664062 2 523.759946 1045.50534 NaN NaN NaN NaN NaN NaN NaN 139.37 1 134.72 134.22 135.22 -4.6439 0 0 0 0.23107 1 27514 27514 1.7423 1.1154 1 + 35990 13595 24207 24223 35460 35460 -0.015592507876363015 QHVILNRKSS 10 Unmodified _QHVILNRKSS_ 0 0 0 REV__ENSG00000256087|ENST00000221315|ZNF432 REV__ENSG00000256087|ENST00000221315|ZNF432 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 591.7412109375 2 591.341104 1180.66765 NaN NaN NaN NaN NaN NaN NaN 170.21 1 165.42 164.92 165.92 -4.7898 0 0 0 2.8426 1 34530 34530 0.043787 0 1 + 35991 19861 24208 24224 35461 35461 0.0845471289451325 QHWEFAPNSV 10 Unmodified _QHWEFAPNSV_ 0 0 0 RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant;ENSG00000204764|ENST00000523189|RANBP17;nc|ENSG00000204764|Q9H2T7-2|RANBP17;ENSG00000130227|ENST00000252512|XPO7 RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.31195068359375 3 405.524484 1213.55162 -0.55292 -0.00022422 -0.83662 -0.00033927 -1.3895 -0.00056349 405.52412181586993 49.345 0.73864 46.338 46.035 46.774 -3.0068 53 20 4 0 0 0 0.75318 1 9057 9057 4.7159 1.1289 1 5441700 35992 7609 24209 24225 35462 35462 -0.04661230676197192 QHWEFAPNSV 10 Unmodified _QHWEFAPNSV_ 0 0 0 RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant;ENSG00000204764|ENST00000523189|RANBP17;nc|ENSG00000204764|Q9H2T7-2|RANBP17;ENSG00000130227|ENST00000252512|XPO7 RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 405.524484 1213.55162 0.33541 0.00013602 -1.5626 -0.00063365 -1.2271 -0.00049764 405.523801514384 46.405 0.65557 46.405 46.073 46.729 0 0.063196 -0.00029557 NaN 4.7159 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4372300 35993 7609 24209 24225 -0.04661230676197192 QHWEFAPNSV 10 Unmodified _QHWEFAPNSV_ 0 0 0 RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant;ENSG00000204764|ENST00000523189|RANBP17;nc|ENSG00000204764|Q9H2T7-2|RANBP17;ENSG00000130227|ENST00000252512|XPO7 RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 405.524484 1213.55162 -0.28812 -0.00011684 -1.4487 -0.0005875 -1.7369 -0.00070434 405.5238679323777 49.107 0.63225 46.226 45.924 46.556 -2.8811 -0.11561 -0.00015712 NaN 4.7159 45 17 4 NaN NaN NaN NaN 0 NaN NaN 0 7903200 35994 7609 24209 24225 -0.04661230676197192 QHWEFAPNSV 10 Unmodified _QHWEFAPNSV_ 0 0 0 RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant;ENSG00000204764|ENST00000523189|RANBP17;nc|ENSG00000204764|Q9H2T7-2|RANBP17;ENSG00000130227|ENST00000252512|XPO7 RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 405.524484 1213.55162 0.0087229 3.5373E-06 -1.496 -0.00060666 -1.4873 -0.00060312 405.5238422637406 49.397 0.65606 46.398 46.033 46.689 -2.999 0.055843 -0.00021459 NaN 4.7159 53 18 4 NaN NaN NaN NaN 0 NaN NaN 0 11292000 35995 7609 24209 24225 -0.04661230676197192 QIAEALLQA 9 Unmodified _QIAEALLQA_ 0 0 0 ENST00000570934.5_1_17:4098183-4145738:-|nuORF;ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENST00000570934.5_1_17:4098183-4145738:-|nuORF ENST00000570934.5_1_17:4098183-4145738:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.744140625 2 478.7742 955.533846 -0.049301 -2.3604E-05 0.23958 0.00011471 0.19028 9.1101E-05 478.774151578594 35.396 0.52055 35.396 35.168 35.688 0 26 14 3 0 0 0 0.54076 1 6553 6553 17.113 0 1 771710 35996 156 24210 24226 35463 35463 0.0543005406894963 QIDACAVIP 9 Unmodified _QIDACAVIP_ 0 0 0 ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2417297363281 2 465.241678 928.468803 0.42451 0.0001975 -0.6947 -0.00032321 -0.27019 -0.0001257 465.2414026883363 123.31 0.77834 118.58 118.15 118.93 -4.731 43 21 3 0 0 0 0.42844 1 23675 23675 24.021 0.87215 1 1344200 35997 5748 24211 24227 35464 35464 0.001707362714341798 QIDGIVHF 8 Unmodified _QIDGIVHF_ 0 0 0 ENSG00000138663|ENST00000264389|COPS4 ENSG00000138663|ENST00000264389|COPS4 ENSG00000138663|ENST00000264389|COPS4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2502746582031 2 464.747985 927.481417 0.020001 9.2956E-06 -0.096462 -4.4831E-05 -0.076461 -3.5535E-05 464.74807818534833 127.2 0.51163 122.58 122.27 122.78 -4.6172 19 14 2 0 0 0 0.25036 3 25109 25066;25072;25109 40.449 11.962 1 1020400 35998 4196 24212 24228 35465;35466;35467 35467 0.014775157260032756 QIDPSSIER 9 Unmodified _QIDPSSIER_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2610473632812 2 522.769645 1043.52474 -0.12336 -6.449E-05 2.4969 0.0013053 2.3736 0.0012408 522.7696423798283 24.995 1.0044 23.141 22.913 23.918 -1.8534 54 28 4 0 0 0 0.71913 1 4199 4199 15.248 0 1 1455900 35999 1969 24213 24229 35468 35468 0.004716607126283634 QIEEAGWSY 9 Unmodified _QIEEAGWSY_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF nc|ENSG00000152556|P08237-2|PFKM nc|ENSG00000152556|P08237-2|PFKM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2644653320312 2 541.743096 1081.47164 -0.26666 -0.00014446 0.054666 2.9615E-05 -0.212 -0.00011485 541.7431918021466 107.86 0.79943 103.54 103.17 103.97 -4.32 45 22 3 0 0 0 0.045272 1 21246 21246 74.929 38.885 1 4051600 36000 4930 24214 24230 35469 35469 -0.06583717070043349 QIEEAGWSY 9 Unmodified _QIEEAGWSY_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF nc|ENSG00000152556|P08237-2|PFKM nc|ENSG00000152556|P08237-2|PFKM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2646484375 2 541.743096 1081.47164 -0.034308 -1.8586E-05 0.31497 0.00017063 0.28066 0.00015205 541.7432137455629 108.01 0.61913 103.6 103.23 103.85 -4.4121 46 17 4 0 0 0 0.12542 1 20698 20698 32.786 28.841 1 4854800 36001 4930 24214 24230 35470 35470 -0.06583717070043349 QIESKKKLL 9 Unmodified _QIESKKKLL_ 0 0 0 REV__TRIM25|p.S361Vfs*20|1|0.13|ENSG00000121060|chr17:56901426-56901426|G/-|frameshift_variant REV__TRIM25|p.S361Vfs*20|1|0.13|ENSG00000121060|chr17:56901426-56901426|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7833251953125 2 543.847699 1085.68084 0.085432 4.6462E-05 0.89518 0.00048684 0.98061 0.0005333 543.8472618633397 137.84 0.10852 132.92 132.86 132.97 -4.9216 4 2 2 0 0 0 0.84208 1 26503 26503 7.2892 0 1 843600 + 36002 15643 24215 24231 35471 35471 0.1414315095389611 QIKCFIRST 9 Unmodified _QIKCFIRST_ 0 0 0 nc|ENSG00000149571|Q8IZU9-2|KIRREL3;KIRREL3|p.N575Mfs*27|1|0.29|ENSG00000149571|chr11:126429261-126429261|T/-|frameshift_variant;ENSG00000149571|ENST00000525144|KIRREL3 nc|ENSG00000149571|Q8IZU9-2|KIRREL3 nc|ENSG00000149571|Q8IZU9-2|KIRREL3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 365.55267333984375 3 365.870826 1094.59065 -0.079392 -2.9047E-05 1.0749 0.00039329 0.99555 0.00036424 365.8712042704966 111.55 0.45112 107.32 106.97 107.42 -4.2289 19 12 2 0 0 0 0.54058 1 21454 21454 12.241 12.241 1 891170 36003 4801 24216 24232 35472 35472 0.04713778353811904 QIKFCTTP 8 Unmodified _QIKFCTTP_ 0 0 0 REV__ENST00000509787.1_1_5:145882841-145883656:+|nuORF REV__ENST00000509787.1_1_5:145882841-145883656:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1493835449219 3 313.165239 936.473888 NaN NaN NaN NaN NaN NaN NaN 85.56 1 81.848 81.348 82.348 -3.7117 0 0 0 0.21486 1 16347 16347 3.9444 1.2092 1 + 36004 22531 24217 24233 35473 35473 0.0031104013405638398 QILYTAYG 8 Unmodified _QILYTAYG_ 0 0 0 ENSG00000149256|ENST00000278550|TENM4;TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 98.235 1 93.966 93.466 94.466 -4.2692 0 0 0 0.21486 1 18774 18774 1.8442 0.6509 1 36005 4777 24218 24234 35474 35474 0.00354693631857117 QILYTAYG 8 Unmodified _QILYTAYG_ 0 0 0 ENSG00000149256|ENST00000278550|TENM4;TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.17303466796875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 97.783 1 93.864 93.364 94.364 -3.9194 0 0 0 0.21486 1 18768 18768 1.8442 0.6509 1 36006 4777 24218 24234 35475 35475 0.00354693631857117 QILYTSQSF 9 Unmodified _QILYTSQSF_ 0 0 0 REV__ZNF184|p.K705N|1|0.18|ENSG00000096654|chr6:27451444-27451444|C/A|missense_variant REV__ZNF184|p.K705N|1|0.18|ENSG00000096654|chr6:27451444-27451444|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7760009765625 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 160.8 1 155.57 155.07 156.07 -5.2299 0 0 0 0.18274 1 31226 31226 0.12781 0 1 + 36007 14624 24219 24235 35476 35476 -2.2671392343909247E-05 QIMGIPQE 8 Unmodified _QIMGIPQE_ 0 0 0 tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1 tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1 tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2338562011719 2 458.233853 914.453153 NaN NaN NaN NaN NaN NaN NaN 80.59 1 77.049 76.549 77.549 -3.5408 0 0 0 0.18898 1 15737 15737 28.487 1.6032 1 36008 26503 24220 24236 35477 35477 -0.0074955024559812955 QIMYRAAC 8 Unmodified _QIMYRAAC_ 0 0 0 ENST00000394144.8_2_3:100030694-100034960:+|nuORF ENST00000394144.8_2_3:100030694-100034960:+|nuORF ENST00000394144.8_2_3:100030694-100034960:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.22235107421875 3 319.154457 954.441542 NaN NaN NaN NaN NaN NaN NaN 87.086 1 87.086 86.586 87.586 0 0 0 0 0.21486 1 16997 16997 0.45834 0 1 36009 9403 24221 24237 35478 35478 -0.03750070540593242 QIMYRAAC 8 Unmodified _QIMYRAAC_ 0 0 0 ENST00000394144.8_2_3:100030694-100034960:+|nuORF ENST00000394144.8_2_3:100030694-100034960:+|nuORF ENST00000394144.8_2_3:100030694-100034960:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.151611328125 3 319.154457 954.441542 NaN NaN NaN NaN NaN NaN NaN 102.73 1 102.73 102.23 103.23 0 0 0 0 0.21486 1 20180 20180 0.45834 0 1 36010 9403 24221 24237 35479 35479 -0.03750070540593242 QIPLFFVFL 9 Unmodified _QIPLFFVFL_ 0 0 0 ENSG00000205029|ENST00000378396|OR5D16 ENSG00000205029|ENST00000378396|OR5D16 ENSG00000205029|ENST00000378396|OR5D16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.22265625 3 375.223194 1122.64775 NaN NaN NaN NaN NaN NaN NaN 60.294 1 57.07 56.57 57.57 -3.2237 0 0 0 0.23508 1 11276 11276 5.2969 0.39987 1 36011 7626 24222 24238 35480 35480 0.09133568901847866 QIQWQWKARYY 11 Unmodified _QIQWQWKARYY_ 0 0 0 REV__ENST00000472991.5_1_3:160117521-160120513:+|nuORF REV__ENST00000472991.5_1_3:160117521-160120513:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4013671875 2 785.401692 1568.78883 NaN NaN NaN NaN NaN NaN NaN 130.56 1 125.92 125.42 126.42 -4.6359 0 0 0 0.22632 1 25729 25729 0.00056442 0 1 + 36012 22066 24223 24239 35481 35481 0.027189155371615925 QIQWQWKARYY 11 Unmodified _QIQWQWKARYY_ 0 0 0 REV__ENST00000472991.5_1_3:160117521-160120513:+|nuORF REV__ENST00000472991.5_1_3:160117521-160120513:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4030151367188 2 785.401692 1568.78883 NaN NaN NaN NaN NaN NaN NaN 165.54 1 160.75 160.25 161.25 -4.7898 0 0 0 0.23698 1 33160 33160 2.4985 0.21571 1 + 36013 22066 24223 24239 35482 35482 0.027189155371615925 QIRESEQRDPQ 11 Unmodified _QIRESEQRDPQ_ 0 0 0 nc|ENSG00000087460|P84996|GNAS nc|ENSG00000087460|P84996|GNAS nc|ENSG00000087460|P84996|GNAS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 693.2108154296875 2 693.342029 1384.6695 NaN NaN NaN NaN NaN NaN NaN 168.83 1 168.83 168.33 169.33 0 0 0 0 0.23018 1 34613 34613 8.1555 0.54658 1 36014 12243 24224 24240 35483 35483 -0.007443228781994549 QIRRGKNILKF 11 Unmodified _QIRRGKNILKF_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 687.135009765625 2 686.93042 1371.84629 NaN NaN NaN NaN NaN NaN NaN 168.65 1 163.86 163.36 164.36 -4.7898 0 0 0 0.23528 1 34109 34109 8.1555 5.1603 1 + 36015 23644 24225 24241 35484 35484 0.1752380253337833 QIRRSKRKRQK 11 Unmodified _QIRRSKRKRQK_ 0 0 0 ENSG00000176979|ENST00000512596|TRIM60 ENSG00000176979|ENST00000512596|TRIM60 ENSG00000176979|ENST00000512596|TRIM60 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3709716796875 2 742.473849 1482.93315 NaN NaN NaN NaN NaN NaN NaN 174.5 1 174.5 174 175 0 0 0 0 0.23698 1 36124 36124 1.1933 0.12188 1 36016 6491 24226 24242 35485 35485 0.21099601807804902 QIRTKVKKQKR 11 Unmodified _QIRTKVKKQKR_ 0 0 0 REV__ENST00000477427.1_1_1:155340246-155340297:-|nuORF REV__ENST00000477427.1_1_1:155340246-155340297:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 707.3361206054688 2 706.962252 1411.90995 NaN NaN NaN NaN NaN NaN NaN 168.26 1 163.37 162.87 163.87 -4.8916 0 0 0 0.22632 1 33160 33160 0.0059557 0 1 + 36017 22119 24227 24243 35486 35486 0.22047162970488898 QIRTLAAERH 10 Unmodified _QIRTLAAERH_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.T595Lfs*44|1|0.28|ENSG00000197694|chr9:128582823-128582823|A/-|frameshift_variant nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 597.837158203125 2 597.838728 1193.6629 NaN NaN NaN NaN NaN NaN NaN 167.11 1 167.11 166.61 167.61 0 0 0 0 0.22588 1 34129 34129 9.3831 0 1 36018 7390 24228 24244 35487 35487 0.07381828751749708 QISDTSVVL 9 Unmodified _QISDTSVVL_ 0 0 0 CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000548088.1_1_12:52632481-52635423:+|nuORF;CON__Q9DCV7;CON__P08729;CON__Q3KNV1;ENSG00000135480|ENST00000331817|KRT7;KRT7|p.E269*|1|0.09|ENSG00000135480|chr12:52241581-52241582|-/T|frameshift_variant;KRT7|p.Y268Lfs*2|1|0.09|ENSG00000135480|chr12:52241579-52241580|-/T|frameshift_variant;ENST00000512037.2_1_4:103650201-103650651:-|nuORF;ENST00000396270.3_1_12:69099864-69100302:+|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000016045;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;ENST00000430398.2_1_1:73570714-73571443:+|nuORF CON__H-INV:HIT000292931 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7658996582031 2 481.263665 960.512776 0.26082 0.00012552 0.26244 0.0001263 0.52326 0.00025182 481.26374060766307 105.57 0.57191 105.57 105.21 105.78 0 25 15 2 0 0 0 0.31714 1 20709 20709 30.637 3.7529 1 1756900 + 36019 647;658;9776 24229 24245 35488 35488 0.030940439694290944 QISDTSVVL 9 Unmodified _QISDTSVVL_ 0 0 0 CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000548088.1_1_12:52632481-52635423:+|nuORF;CON__Q9DCV7;CON__P08729;CON__Q3KNV1;ENSG00000135480|ENST00000331817|KRT7;KRT7|p.E269*|1|0.09|ENSG00000135480|chr12:52241581-52241582|-/T|frameshift_variant;KRT7|p.Y268Lfs*2|1|0.09|ENSG00000135480|chr12:52241579-52241580|-/T|frameshift_variant;ENST00000512037.2_1_4:103650201-103650651:-|nuORF;ENST00000396270.3_1_12:69099864-69100302:+|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000016045;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;ENST00000430398.2_1_1:73570714-73571443:+|nuORF CON__H-INV:HIT000292931 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2549743652344 2 481.263665 960.512776 -0.38235 -0.00018401 0.49178 0.00023668 0.10943 5.2665E-05 481.26383763896746 109.71 0.7626 105.33 104.89 105.65 -4.3776 31 21 2 0 0 0 0.16619 3 21645 21595;21643;21645 41.84 5.902 1 1578800 + 36020 647;658;9776 24229 24245 35489;35490;35491 35491 0.030940439694290944 QISDTSVVL 9 Unmodified _QISDTSVVL_ 0 0 0 CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000548088.1_1_12:52632481-52635423:+|nuORF;CON__Q9DCV7;CON__P08729;CON__Q3KNV1;ENSG00000135480|ENST00000331817|KRT7;KRT7|p.E269*|1|0.09|ENSG00000135480|chr12:52241581-52241582|-/T|frameshift_variant;KRT7|p.Y268Lfs*2|1|0.09|ENSG00000135480|chr12:52241579-52241580|-/T|frameshift_variant;ENST00000512037.2_1_4:103650201-103650651:-|nuORF;ENST00000396270.3_1_12:69099864-69100302:+|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000016045;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;ENST00000430398.2_1_1:73570714-73571443:+|nuORF CON__H-INV:HIT000292931 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2456359863281 2 481.263665 960.512776 -0.17807 -8.5701E-05 0.30345 0.00014604 0.12537 6.0336E-05 481.2638060529451 109.91 0.67583 105.46 104.98 105.66 -4.4518 28 18 2 0 0 0 0.31714 1 21091 21091 30.637 5.2372 1 1317700 + 36021 647;658;9776 24229 24245 35492 35492 0.030940439694290944 QISNLSST 8 Unmodified _QISNLSST_ 0 0 0 ENSG00000244476|ENST00000472091|ERVFRD-1 ENSG00000244476|ENST00000472091|ERVFRD-1 ENSG00000244476|ENST00000472091|ERVFRD-1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2164611816406 2 425.219257 848.423961 NaN NaN NaN NaN NaN NaN NaN 97.97 1 93.872 93.372 94.372 -4.0978 0 0 0 0.21486 1 19233 19233 8.5933 0 1 36022 7881 24230 24246 35493 35493 -0.006313712702421981 QITNTDTLAA 10 Unmodified _QITNTDTLAA_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8;SCAF8|p.P705Lfs*6|1|0.37|ENSG00000213079|chr6:154827210-154827210|C/-|frameshift_variant;SCAF8|p.L984*|1|0.58|ENSG00000213079|chr6:154832525-154832525|T/-|frameshift_variant;SCAF8|p.R1000Gfs*22|1|0.51|ENSG00000213079|chr6:154832572-154832572|A/-|frameshift_variant nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6905517578125 2 524.269478 1046.5244 0.23418 0.00012278 -0.96756 -0.00050726 -0.73338 -0.00038449 524.770666546575 38.408 0.24948 36.003 35.913 36.162 -2.4049 9 6 2 0 0 0 0.83271 1 6850 6850 16.149 2.2431 1 658540 36023 12588 24231 24247 35494 35494 0.003002409927375993 QITNTDTLAA 10 Unmodified _QITNTDTLAA_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8;SCAF8|p.P705Lfs*6|1|0.37|ENSG00000213079|chr6:154827210-154827210|C/-|frameshift_variant;SCAF8|p.L984*|1|0.58|ENSG00000213079|chr6:154832525-154832525|T/-|frameshift_variant;SCAF8|p.R1000Gfs*22|1|0.51|ENSG00000213079|chr6:154832572-154832572|A/-|frameshift_variant nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 524.269478 1046.5244 -0.49073 -0.00025727 -0.61529 -0.00032258 -1.106 -0.00057985 524.2696910222974 38.544 0.32039 35.995 35.837 36.157 -2.5491 0.0035959 8.7061E-05 NaN 16.149 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 603090 36024 12588 24231 24247 0.003002409927375993 QITNTDTLAA 10 Unmodified _QITNTDTLAA_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8;SCAF8|p.P705Lfs*6|1|0.37|ENSG00000213079|chr6:154827210-154827210|C/-|frameshift_variant;SCAF8|p.L984*|1|0.58|ENSG00000213079|chr6:154832525-154832525|T/-|frameshift_variant;SCAF8|p.R1000Gfs*22|1|0.51|ENSG00000213079|chr6:154832572-154832572|A/-|frameshift_variant nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 524.269478 1046.5244 -0.43681 -0.00022901 -0.54315 -0.00028476 -0.97997 -0.00051377 524.2694424888192 38.419 0.21227 35.977 35.912 36.125 -2.4419 -0.015005 0.0001627 NaN 16.149 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 748880 36025 12588 24231 24247 0.003002409927375993 QIVKKLQP 8 Unmodified _QIVKKLQP_ 0 0 0 REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 477.3090515136719 2 477.310752 952.606951 NaN NaN NaN NaN NaN NaN NaN 65.629 1 65.629 65.129 66.129 0 0 0 0 0.21486 1 12660 12660 2.3027 0 1 + 36026 14371 24232 24248 35495 35495 0.12875227582219395 QIVNLEPD 8 Unmodified _QIVNLEPD_ 0 0 0 REV__ENSG00000148795|ENST00000369887|CYP17A1 REV__ENSG00000148795|ENST00000369887|CYP17A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24578857421875 2 464.242732 926.470912 0.61254 0.00028437 -0.48239 -0.00022395 0.13014 6.0418E-05 464.2423801234162 111.23 0.56165 107 106.73 107.29 -4.2289 33 15 3 0 0 0 0.58432 1 21393 21393 23.148 1.4018 1 1720000 + 36027 16988 24233 24249 35496 35496 0.0047348828089752715 QIWQERNI 8 Unmodified _QIWQERNI_ 0 0 0 REV__ENSG00000101161|ENST00000266079|PRPF6 REV__ENSG00000101161|ENST00000266079|PRPF6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7891845703125 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 145.24 1 140.29 139.79 140.79 -4.9445 0 0 0 0.22674 1 28077 28077 14.838 10.122 1 + 36028 14764 24234 24250 35497 35497 0.02243377049035189 QIWRRRRKMRR 11 Unmodified _QIWRRRRKMRR_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7882690429688 3 547.998821 1640.97463 NaN NaN NaN NaN NaN NaN NaN 65.276 1 65.276 64.776 65.776 0 0 0 0 0.23698 1 12581 12581 0.08335 0.08335 1 + 36029 20142 24235 24251 35498 35498 0.17978459295477478 QIWRRRRKMRR 11 Unmodified _QIWRRRRKMRR_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7896118164062 3 547.998821 1640.97463 NaN NaN NaN NaN NaN NaN NaN 68.922 1 65.386 64.886 65.886 -3.5362 0 0 0 0.23698 1 12967 12967 0.08335 0.08335 1 + 36030 20142 24235 24251 35499 35499 0.17978459295477478 QIYDLKKWDQF 11 Unmodified _QIYDLKKWDQF_ 0 0 0 ENSG00000196620|ENST00000338206|UGT2B15 ENSG00000196620|ENST00000338206|UGT2B15 ENSG00000196620|ENST00000338206|UGT2B15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3825073242188 2 742.382634 1482.75072 NaN NaN NaN NaN NaN NaN NaN 175.23 1 175.23 174.73 175.73 0 0 0 0 0.23698 1 36306 36306 1.3295 0 1 36031 7292 24236 24252 35500 35500 0.028649848318536897 QIYIHHLKGA 10 Unmodified _QIYIHHLKGA_ 0 0 0 ATM|p.P292L|1|0.7|ENSG00000149311|chr11:108245000-108245000|C/T|missense_variant ATM|p.P292L|1|0.7|ENSG00000149311|chr11:108245000-108245000|C/T|missense_variant ATM|p.P292L|1|0.7|ENSG00000149311|chr11:108245000-108245000|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2516479492188 2 590.33529 1178.65603 NaN NaN NaN NaN NaN NaN NaN 172.81 1 168.02 167.52 168.52 -4.7898 0 0 0 0.22566 1 35222 35222 16.149 0.90062 1 36032 259 24237 24253 35501 35501 0.0738451587117197 QIYTIYGA 8 Unmodified _QIYTIYGA_ 0 0 0 REV__CEACAM4|p.D85Y|1|0.16|ENSG00000105352|chr19:41625772-41625772|C/A|missense_variant REV__CEACAM4|p.D85Y|1|0.16|ENSG00000105352|chr19:41625772-41625772|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17034912109375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 97.377 1 97.377 96.877 97.877 0 0 0 0 0.21486 1 19082 19082 0.45834 0 1 + 36033 13361 24238 24254 35502 35502 0.00354693631857117 QIYTIYGA 8 Unmodified _QIYTIYGA_ 0 0 0 REV__CEACAM4|p.D85Y|1|0.16|ENSG00000105352|chr19:41625772-41625772|C/A|missense_variant REV__CEACAM4|p.D85Y|1|0.16|ENSG00000105352|chr19:41625772-41625772|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1728515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 126.08 1 121.31 120.81 121.81 -4.7681 0 0 0 0.21486 1 24201 24201 0.45834 0 1 + 36034 13361 24238 24254 35503 35503 0.00354693631857117 QIYTIYGA 8 Unmodified _QIYTIYGA_ 0 0 0 REV__CEACAM4|p.D85Y|1|0.16|ENSG00000105352|chr19:41625772-41625772|C/A|missense_variant REV__CEACAM4|p.D85Y|1|0.16|ENSG00000105352|chr19:41625772-41625772|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1651306152344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 145.15 1 140.2 139.7 140.7 -4.9445 0 0 0 0.2396 1 28056 28056 0.12286 0 1 + 36035 13361 24238 24254 35504 35504 0.00354693631857117 QIYYRFLQRMF 11 Unmodified _QIYYRFLQRMF_ 0 0 0 ENSG00000119698|ENST00000304338|PPP4R4 ENSG00000119698|ENST00000304338|PPP4R4 ENSG00000119698|ENST00000304338|PPP4R4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27197265625 3 522.274623 1563.80204 NaN NaN NaN NaN NaN NaN NaN 83.246 1 79.548 79.048 80.048 -3.6985 0 0 0 0.22632 1 15889 15889 0.50596 0 1 36036 3094 24239 24255 35505 35505 0.04269030324871892 QKAAGTKQNYI 11 Unmodified _QKAAGTKQNYI_ 0 0 0 tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1 tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1 tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 407.9539489746094 3 407.891055 1220.65134 NaN NaN NaN NaN NaN NaN NaN 9.5373 1 8.7431 8.2431 9.2431 -0.79424 0 0 0 0.23698 1 1109 1109 0.094841 0 1 36037 25955 24240 24256 35506 35506 0.04983586937760265 QKAAGTKQNYI 11 Unmodified _QKAAGTKQNYI_ 0 0 0 tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1 tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1 tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 407.9881286621094 3 407.891055 1220.65134 NaN NaN NaN NaN NaN NaN NaN 9.5727 1 8.7784 8.2784 9.2784 -0.79424 0 0 0 0.23698 1 1117 1117 0.094841 0 1 36038 25955 24240 24256 35507 35507 0.04983586937760265 QKAKKARKR 9 Unmodified _QKAKKARKR_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 557.3677978515625 2 557.369998 1112.72544 NaN NaN NaN NaN NaN NaN NaN 177.41 1 177.41 176.91 177.91 0 0 0 0 0.19626 1 36750 36750 0.029283 0.025902 1 + 36039 14286 24241 24257 35508 35508 0.17359019610580617 QKAPGPGPGQE 11 Unmodified _QKAPGPGPGQE_ 0 0 0 ENSG00000136383|ENST00000258888|ALPK3;ALPK3|p.Q675Sfs*30|1|0.18|ENSG00000136383|chr15:84840691-84840691|C/-|frameshift_variant;ALPK3|p.P971Tfs*8|1|0.17|ENSG00000136383|chr15:84857035-84857036|-/A|frameshift_variant;ALPK3|p.K970Nfs*12|3|0.26|ENSG00000136383|chr15:84857036-84857036|A/-|frameshift_variant;ALPK3|p.P1112Qfs*48|1|0.27|ENSG00000136383|chr15:84857464-84857464|C/-|frameshift_variant ENSG00000136383|ENST00000258888|ALPK3 ENSG00000136383|ENST00000258888|ALPK3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2680053710938 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 164.53 1 164.53 164.03 165.03 0 0 0 0 0.224 1 33281 33281 13.042 0.80181 1 36040 4009 24242 24258 35509 35509 -0.00460919567512974 QKEEEKKF 8 Unmodified _QKEEEKKF_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2681274414062 2 533.282389 1064.55022 -0.12727 -6.7868E-05 1.0983 0.00058571 0.97105 0.00051784 533.283199294547 69.987 0.7851 69.987 69.524 70.309 0 33 21 2 0 0 0 8448 1 13481 13481 15.478 3.2378 1 3815600 36041 5890 24243 24259 35510 35510 0.020531352350417365 QKENQRLQ 8 Unmodified _QKENQRLQ_ 0 0 0 MLLT6|p.K747Rfs*45|1|0.22|ENSG00000275023|chr17:38720452-38720452|A/-|frameshift_variant;ENSG00000275023|ENST00000621332|MLLT6 MLLT6|p.K747Rfs*45|1|0.22|ENSG00000275023|chr17:38720452-38720452|A/-|frameshift_variant MLLT6|p.K747Rfs*45|1|0.22|ENSG00000275023|chr17:38720452-38720452|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2667846679688 2 522.283254 1042.55196 -0.40165 -0.00020978 0.32547 0.00016999 -0.076182 -3.9788E-05 522.2834466230013 17.668 0.27108 16.357 16.204 16.475 -1.3109 16 7 3 0 0 0 8448 1 2864 2864 1.7423 0 1 2434300 36042 8021 24244 24260 35511 35511 0.032381890436681715 QKGPRARQ 8 Unmodified _QKGPRARQ_ 0 0 0 REV__ENST00000314852.2_1_15:75940516-75940885:-|nuORF REV__ENST00000314852.2_1_15:75940516-75940885:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1585388183594 3 314.186025 939.536246 NaN NaN NaN NaN NaN NaN NaN 73.056 1 69.429 68.929 69.929 -3.6275 0 0 0 0.21486 1 13805 13805 1.6526 0 1 + 36043 20513 24245 24261 35512 35512 0.0640594731727333 QKHDIPKA 8 Unmodified _QKHDIPKA_ 0 0 0 ENSG00000104808|ENST00000221403|DHDH ENSG00000104808|ENST00000221403|DHDH ENSG00000104808|ENST00000221403|DHDH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1617431640625 3 312.846898 935.518865 -1.7748 -0.00055523 1.5084 0.00047191 -0.26632 -8.3316E-05 312.84727920904623 18.88 0.35124 17.245 17.078 17.429 -1.6351 14 9 2 0 0 0 1.0278 1 2827 2827 1.4819 0 1 302170 36044 2256 24246 24262 35513 35513 0.048526069916078995 QKHDIPKA 8 Unmodified _QKHDIPKA_ 0 0 0 ENSG00000104808|ENST00000221403|DHDH ENSG00000104808|ENST00000221403|DHDH ENSG00000104808|ENST00000221403|DHDH MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 312.846898 935.518865 -0.554 -0.00017332 0.76235 0.0002385 0.20834 6.518E-05 312.84697409707366 17.321 0.30714 17.321 17.137 17.445 0 -0.029569 5.9995E-05 NaN 1.4819 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 421720 36045 2256 24246 24262 0.048526069916078995 QKHDIPKA 8 Unmodified _QKHDIPKA_ 0 0 0 ENSG00000104808|ENST00000221403|DHDH ENSG00000104808|ENST00000221403|DHDH ENSG00000104808|ENST00000221403|DHDH MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 312.846898 935.518865 -0.27106 -8.4799E-05 0.43748 0.00013686 0.16642 5.2065E-05 312.8469358517049 18.783 0.30533 17.472 17.282 17.587 -1.3109 0.12209 -0.00024491 NaN 1.4819 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 502180 36046 2256 24246 24262 0.048526069916078995 QKHDIPKA 8 Unmodified _QKHDIPKA_ 0 0 0 ENSG00000104808|ENST00000221403|DHDH ENSG00000104808|ENST00000221403|DHDH ENSG00000104808|ENST00000221403|DHDH MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 312.846898 935.518865 -0.35917 -0.00011236 0.49529 0.00015495 0.13612 4.2586E-05 312.8469604641523 18.688 0.21003 17.363 17.222 17.432 -1.3251 0.012738 -0.00019065 NaN 1.4819 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 505750 36047 2256 24246 24262 0.048526069916078995 QKHPALPLAL 10 Unmodified _QKHPALPLAL_ 0 0 0 REV__nc|ENSG00000131059|Q9BQP9-2|BPIFA3 REV__nc|ENSG00000131059|Q9BQP9-2|BPIFA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7704467773438 2 544.334759 1086.65496 0.38065 0.0002072 -1.9724 -0.0010737 -1.5918 -0.00086645 544.3334927803655 143.97 0.144 139.02 138.92 139.06 -4.9445 5 3 2 0 0 0 0.84281 1 27778 27778 13.906 3.0821 1 2493300 + 36048 16053 24247 24263 35514 35514 0.11510301502266884 QKHPKFGS 8 Unmodified _QKHPKFGS_ 0 0 0 ENST00000296028.3_1_4:74853004-74853332:-|nuORF ENST00000296028.3_1_4:74853004-74853332:-|nuORF ENST00000296028.3_1_4:74853004-74853332:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1726989746094 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 150.3 1 145.18 144.68 145.68 -5.1204 0 0 0 0.21486 1 29128 29128 1.3295 0.87119 1 36049 8504 24248 24264 35515 35515 0.026003378201494343 QKHRRIWSCRN 11 Unmodified _QKHRRIWSCRN_ 0 0 0 REV__ENST00000490210.6_1_18:77123630-77123687:+|nuORF REV__ENST00000490210.6_1_18:77123630-77123687:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3935546875 2 742.39421 1482.77387 NaN NaN NaN NaN NaN NaN NaN 102.5 1 102.5 102 103 0 0 0 0 0.22632 1 20133 20133 0.50596 0.50539 1 + 36050 22303 24249 24265 35516 35516 0.051791451882081674 QKIKKDPY 8 Unmodified _QKIKKDPY_ 0 0 0 ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;TBC1D15|p.W365Gfs*22|1|0.37|ENSG00000121749|chr12:71896727-71896727|T/-|frameshift_variant;TBC1D15|p.L440Ffs*8|1|0.12|ENSG00000121749|chr12:71907102-71907103|-/T|frameshift_variant ENSG00000121749|ENST00000485960|TBC1D15 ENSG00000121749|ENST00000485960|TBC1D15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 510.119873046875 2 510.297842 1018.58113 NaN NaN NaN NaN NaN NaN NaN 144.45 1 139.51 139.01 140.01 -4.9445 0 0 0 0.23538 1 27903 27903 0.62683 0.21856 1 36051 3190 24250 24266 35517 35517 0.07258333339939327 QKIYVKNMK 9 Unmodified _QKIYVKNMK_ 0 0 0 ENST00000347328.9_1_12:50821677-50822762:+|nuORF;ENST00000429001.7_2_12:50821686-50822762:+|nuORF ENST00000347328.9_1_12:50821677-50822762:+|nuORF ENST00000347328.9_1_12:50821677-50822762:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33447265625 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 47.424 1 44.474 43.974 44.974 -2.9499 0 0 0 0.20628 1 8657 8657 21.747 4.8044 1 36052 8912 24251 24267 35518 35518 0.08394924422009353 QKIYVYWEVQL 11 Unmodified _QKIYVYWEVQL_ 0 0 0 ENSG00000111203|ENST00000228799|ITFG2 ENSG00000111203|ENST00000228799|ITFG2 ENSG00000111203|ENST00000228799|ITFG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2649841308594 3 490.26601 1467.7762 NaN NaN NaN NaN NaN NaN NaN 71.443 1 67.976 67.476 68.476 -3.467 0 0 0 0.22632 1 13541 13541 0.58532 0 1 36053 2607 24252 24268 35519 35519 0.0610245935426974 QKKHFDKL 8 Unmodified _QKKHFDKL_ 0 0 0 REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2737426757812 2 522.303458 1042.59236 NaN NaN NaN NaN NaN NaN NaN 158.41 1 153.62 153.12 154.12 -4.7952 0 0 0 0.23749 1 31501 31501 0.0082765 0 1 + 36054 13707 24253 24269 35520 35520 0.07277155434076121 QKKILSSI 8 Unmodified _QKKILSSI_ 0 0 0 ENSG00000182580|ENST00000330394|EPHB3;EPHA7|p.M978L|1|0.14|ENSG00000135333|chr6:93243491-93243491|T/A|missense_variant ENSG00000182580|ENST00000330394|EPHB3 ENSG00000182580|ENST00000330394|EPHB3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 306.20037841796875 3 306.199049 915.575317 NaN NaN NaN NaN NaN NaN NaN 69.618 1 66.439 65.939 66.939 -3.1796 0 0 0 0.2386 1 13537 13537 0.12286 0 1 36055 6797 24254 24270 35521 35521 0.11415234828291432 QKKKKKKK 8 Unmodified _QKKKKKKK_ 0 0 0 SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-3|SRRM2;ENST00000265340.11_1_5:134364111-134364312:-|nuORF;NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1 SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENST00000265340.11_1_5:134364111-134364312:-|nuORF;NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;nc|ENSG00000070814|Q13428-2|TCOF1;REV__nc|ENSG00000067066|P23497-5|SP100 ENST00000607315.1_1_8:30013391-30013664:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2759399414062 2 522.374218 1042.73388 NaN NaN NaN NaN NaN NaN NaN 142.9 1 138.25 137.75 138.75 -4.656 0 0 0 0.2396 1 28250 28250 0 0 1 36056 11759;5863;1439;8355;2614;23944 24255 24271 35522 35522 0.2142257352722936 QKKKKKKK 8 Unmodified _QKKKKKKK_ 0 0 0 SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-3|SRRM2;ENST00000265340.11_1_5:134364111-134364312:-|nuORF;NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1 SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENST00000265340.11_1_5:134364111-134364312:-|nuORF;NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;nc|ENSG00000070814|Q13428-2|TCOF1;REV__nc|ENSG00000067066|P23497-5|SP100 ENST00000607315.1_1_8:30013391-30013664:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2689208984375 2 522.374218 1042.73388 NaN NaN NaN NaN NaN NaN NaN 151.52 1 146.77 146.27 147.27 -4.7523 0 0 0 0.2396 1 30103 30103 0 0 1 36057 11759;5863;1439;8355;2614;23944 24255 24271 35523 35523 0.2142257352722936 QKKKKKKKKKA 11 Unmodified _QKKKKKKKKKA_ 0 0 0 ENST00000607315.1_1_8:30013391-30013664:-|nuORF ENST00000607315.1_1_8:30013391-30013664:-|nuORF ENST00000607315.1_1_8:30013391-30013664:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 686.1396484375 2 685.987738 1369.96092 NaN NaN NaN NaN NaN NaN NaN 174.81 1 169.92 169.42 170.42 -4.8916 0 0 0 0.23698 1 34813 34813 0 0 1 36058 11759 24256 24272 35524 35524 0.2907411201533705 QKKKKKKKLRK 11 Unmodified _QKKKKKKKLRK_ 0 0 0 REV__nc|ENSG00000067066|P23497-5|SP100 REV__nc|ENSG00000067066|P23497-5|SP100 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2533264160156 3 481.01195 1440.01402 NaN NaN NaN NaN NaN NaN NaN 130.83 1 126 125.5 126.5 -4.8355 0 0 0 0.23698 1 25120 25120 0 0 1 + 36059 23944 24257 24273 35525 35525 0.3116148979800073 QKKLKKKKKKK 11 Unmodified _QKKLKKKKKKK_ 0 0 0 ENST00000378026.4_3_12:106631761-106631812:-|nuORF ENST00000378026.4_3_12:106631761-106631812:-|nuORF ENST00000378026.4_3_12:106631761-106631812:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 706.8037109375 2 707.011213 1412.00787 NaN NaN NaN NaN NaN NaN NaN 165.1 1 160.31 159.81 160.81 -4.7898 0 0 0 0.23698 1 33039 33039 0 0 1 36060 9272 24258 24274 35526 35526 0.31834971566468084 QKKTHPVRT 9 Unmodified _QKKTHPVRT_ 0 0 0 DACT1|p.P520Rfs*60|3|0.21|ENSG00000165617|chr14:58646177-58646177|C/-|frameshift_variant;ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1 DACT1|p.P520Rfs*60|3|0.21|ENSG00000165617|chr14:58646177-58646177|C/-|frameshift_variant DACT1|p.P520Rfs*60|3|0.21|ENSG00000165617|chr14:58646177-58646177|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7888793945312 2 547.825089 1093.63563 0.33285 0.00018234 2.7644 0.0015144 3.0973 0.0016968 548.329259567279 147.58 0.21136 147.58 147.5 147.71 0 7 5 2 0 0 0 0.5685 1 29512 29512 15.248 4.449 1 1264600 36061 778 24259 24275 35527 35527 0.0925534521136342 QKKTHPVRT 9 Unmodified _QKKTHPVRT_ 0 0 0 DACT1|p.P520Rfs*60|3|0.21|ENSG00000165617|chr14:58646177-58646177|C/-|frameshift_variant;ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1 DACT1|p.P520Rfs*60|3|0.21|ENSG00000165617|chr14:58646177-58646177|C/-|frameshift_variant DACT1|p.P520Rfs*60|3|0.21|ENSG00000165617|chr14:58646177-58646177|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7693481445312 2 547.825089 1093.63563 NaN NaN NaN NaN NaN NaN NaN 154.2 1 148.94 148.44 149.44 -5.2669 0 0 0 0.23508 1 29899 29899 10.8 1.4164 1 36062 778 24259 24275 35528 35528 0.0925534521136342 QKLKRLLP 8 Unmodified _QKLKRLLP_ 0 0 0 ASZ1|p.T33M|1|0.45|ENSG00000154438|chr7:117427363-117427363|G/A|missense_variant;nc|ENSG00000154438|Q8WWH4-2|ASZ1;ENSG00000154438|ENST00000284629|ASZ1 ASZ1|p.T33M|1|0.45|ENSG00000154438|chr7:117427363-117427363|G/A|missense_variant ASZ1|p.T33M|1|0.45|ENSG00000154438|chr7:117427363-117427363|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 498.33807373046875 2 498.339844 994.665135 NaN NaN NaN NaN NaN NaN NaN 131.63 1 126.83 126.33 127.33 -4.799 0 0 0 0.2396 1 25343 25343 0.12286 0 1 36063 245 24260 24276 35529 35529 0.16758909227496588 QKLPSPDSG 9 Unmodified _QKLPSPDSG_ 0 0 0 nc|nan|P58505-2|C21orf58;ENSG00000160298|ENST00000291691|C21orf58 nc|nan|P58505-2|C21orf58 nc|nan|P58505-2|C21orf58 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1630859375 3 310.162663 927.46616 NaN NaN NaN NaN NaN NaN NaN 148.5 1 143.79 143.29 144.29 -4.7095 0 0 0 0.23508 1 29489 29489 1.0715 0.61312 1 36064 5246 24261 24277 35530 35530 -0.0004739586186133238 QKMLRVKTKK 10 Unmodified _QKMLRVKTKK_ 0 0 0 REV__KIF21A|p.L1270Sfs*13|1|0.12|ENSG00000139116|chr12:39318174-39318175|-/G|frameshift_variant REV__KIF21A|p.L1270Sfs*13|1|0.12|ENSG00000139116|chr12:39318174-39318175|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7627563476562 2 630.40265 1258.79075 0.42904 0.00027047 0.22773 0.00014356 0.65677 0.00041403 630.4016456693755 171.86 0.20894 166.94 166.76 166.97 -4.9149 6 5 2 0 0 0 1.1344 1 34064 34064 0.69767 0.65388 1 5224700 + 36065 16500 24262 24278 35531 35531 0.17170253021413373 QKNHILEEI 9 Unmodified _QKNHILEEI_ 0 0 0 CAMSAP3|p.R1145H|1|0.08|ENSG00000076826|chr19:7617651-7617651|G/A|missense_variant CAMSAP3|p.R1145H|1|0.08|ENSG00000076826|chr19:7617651-7617651|G/A|missense_variant CAMSAP3|p.R1145H|1|0.08|ENSG00000076826|chr19:7617651-7617651|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.20806884765625 3 375.208384 1122.60332 -0.018476 -6.9322E-06 0.028857 1.0827E-05 0.010381 3.895E-06 375.208307424031 45.48 0.38604 42.614 42.307 42.693 -2.8653 14 10 2 0 0 0 0.64764 1 8217 8217 0.96228 0.65524 1 854500 36066 374 24263 24279 35532 35532 0.04692513017721467 QKNKSVSQY 9 Unmodified _QKNKSVSQY_ 0 0 0 nc|ENSG00000164304|Q8TC20-2|CAGE1;nc|ENSG00000164304|Q8TC20-4|CAGE1;nc|ENSG00000164304|Q8TC20|CAGE1;nc|ENSG00000164304|Q8TC20-3|CAGE1;ENSG00000164304|ENST00000502583|CAGE1 nc|ENSG00000164304|Q8TC20-2|CAGE1 nc|ENSG00000164304|Q8TC20-2|CAGE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1594543457031 3 361.192734 1080.55637 NaN NaN NaN NaN NaN NaN NaN 113.78 1 109.33 108.83 109.83 -4.4539 0 0 0 0.19674 1 22418 22418 0.40827 0.28045 1 36067 5530 24264 24280 35533 35533 0.019316534665676954 QKPENNQSF 9 Unmodified _QKPENNQSF_ 0 0 0 ENSG00000253250|ENST00000517562|C8orf88 ENSG00000253250|ENST00000517562|C8orf88 ENSG00000253250|ENST00000517562|C8orf88 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7926635742188 2 546.259445 1090.50434 -0.020107 -1.0983E-05 0.057869 3.1611E-05 0.037762 2.0628E-05 546.259498717662 80.144 2.2791 76.339 75.716 77.995 -3.8048 179 64 5 0 0 0 0.67531 1 15308 15308 7.9102 7.9102 1 163350000 36068 7912 24265 24281 35534 35534 -0.037295099471975846 QKPGVGAGH 9 Unmodified _QKPGVGAGH_ 0 0 0 nc|ENSG00000167644|Q9GZP8-2|IMUP;ENSG00000167644|ENST00000301246|C19orf33;ENST00000589986.2_1_19:38794923-38795601:+|nuORF nc|ENSG00000167644|Q9GZP8-2|IMUP nc|ENSG00000167644|Q9GZP8-2|IMUP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23992919921875 2 425.730126 849.4457 0.26208 0.00011157 -0.23188 -9.872E-05 0.030194 1.2855E-05 425.7300215626795 30.677 0.34933 28.603 28.36 28.71 -2.0743 14 9 2 0 0 0 0.64253 1 5240 5240 2.4985 1.169 1 862600 36069 5828 24266 24282 35535 35535 0.014954782689983404 QKPWWCEVQ 9 Unmodified _QKPWWCEVQ_ 0 0 0 REV__ENST00000425394.6_1_12:56710785-56711043:-|nuORF REV__ENST00000425394.6_1_12:56710785-56711043:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2822265625 2 602.284408 1202.55426 NaN NaN NaN NaN NaN NaN NaN 61.873 1 61.873 61.373 62.373 0 0 0 0 0.23508 1 11867 11867 12.241 0.60036 1 + 36070 21557 24267 24283 35536 35536 -0.03891098542908367 QKPYRCPA 8 Unmodified _QKPYRCPA_ 0 0 0 nc|ENSG00000167394|Q96K58-2|ZNF668;ENSG00000167394|ENST00000300849|ZNF668;ZNF668|p.A247V|1|0.14|ENSG00000167394|chr16:31062188-31062188|G/A|missense_variant nc|ENSG00000167394|Q96K58-2|ZNF668 nc|ENSG00000167394|Q96K58-2|ZNF668 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7876281738281 2 481.747462 961.480371 NaN NaN NaN NaN NaN NaN NaN 115.62 1 115.62 115.12 116.12 0 0 0 0 0.21452 1 22756 22756 13.508 4.1604 1 36071 5807 24268 24284 35537 35537 -0.0019102191456568107 QKQMMKMSILL 11 Unmodified _QKQMMKMSILL_ 0 0 0 ENST00000520944.5_1_8:67834209-67834347:-|nuORF ENST00000520944.5_1_8:67834209-67834347:-|nuORF ENST00000520944.5_1_8:67834209-67834347:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 450.9155578613281 3 450.91505 1349.72332 NaN NaN NaN NaN NaN NaN NaN 6.7482 1 6.7482 6.2482 7.2482 0 0 0 0 0.23698 1 544 544 0 0 1 36072 10839 24269 24285 35538 35538 0.06244718703987928 QKQNTMKFG 9 Unmodified _QKQNTMKFG_ 0 0 0 EXOC6|p.K237T|1|0.09|ENSG00000138190|chr10:92915804-92915804|A/C|missense_variant EXOC6|p.K237T|1|0.09|ENSG00000138190|chr10:92915804-92915804|A/C|missense_variant EXOC6|p.K237T|1|0.09|ENSG00000138190|chr10:92915804-92915804|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.276123046875 2 541.276583 1080.53861 NaN NaN NaN NaN NaN NaN NaN 39.223 1 36.781 36.281 37.281 -2.4419 0 0 0 0.19657 1 7001 7001 4.897 1.0207 1 36073 11788 24270 24286 35539 35539 0.0015661494007872534 QKQNVCPG 8 Unmodified _QKQNVCPG_ 0 0 0 REV__nc|ENSG00000132016|Q0VDD7-2|BRME1 REV__nc|ENSG00000132016|Q0VDD7-2|BRME1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.217041015625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 66.17 1 63.123 62.623 63.623 -3.047 0 0 0 0.21486 1 12817 12817 9.3474 2.9933 1 + 36074 16095 24271 24287 35540 35540 -0.023875877025943737 QKRIEASSY 9 Unmodified _QKRIEASSY_ 0 0 0 REV__DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant REV__DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2587280273438 2 541.285463 1080.55637 0.072002 3.8974E-05 0.026536 1.4364E-05 0.098538 5.3337E-05 541.2854630113176 17.938 0.42743 16.627 16.404 16.831 -1.3109 31 11 4 0 0 0 0.62102 1 2857 2857 11.64 3.7301 1 10297000 + 36075 13739 24272 24288 35541 35541 0.019316534665676954 QKRIKLKAP 9 Unmodified _QKRIKLKAP_ 0 0 0 REV__ENSG00000109944|ENST00000227349|JHY REV__ENSG00000109944|ENST00000227349|JHY MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2785034179688 2 541.36385 1080.71315 NaN NaN NaN NaN NaN NaN NaN 173.71 1 173.71 173.21 174.21 0 0 0 0 0.19632 1 35934 35934 0.073264 0 1 + 36076 15182 24273 24289 35542 35542 0.17601983147551437 QKRLLEEY 8 Unmodified _QKRLLEEY_ 0 0 0 REV__ENSG00000133030|ENST00000651222|MPRIP REV__ENSG00000133030|ENST00000651222|MPRIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2159729003906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 126.57 1 121.95 121.45 122.45 -4.6172 0 0 0 0.21486 1 24956 24956 3.5965 1.098 1 + 36077 16150 24274 24290 35543 35543 0.0461712798901317 QKRPVHVHV 9 Unmodified _QKRPVHVHV_ 0 0 0 ENST00000477161.1_1_10:15256501-15262993:-|nuORF;ENST00000378116.8_1_10:15256501-15262974:-|nuORF ENST00000477161.1_1_10:15256501-15262993:-|nuORF ENST00000477161.1_1_10:15256501-15262993:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.8778076171875 3 367.220958 1098.64105 -0.14037 -5.1546E-05 -0.99889 -0.00036681 -1.1393 -0.00041836 367.22048626380166 19.348 0.53335 17.951 17.674 18.208 -1.3966 20 14 2 0 0 0 0.64253 1 3206 3206 2.4985 0 1 312900 36078 9274 24275 24291 35544 35544 0.0956706879385365 QKRPVHVHV 9 Unmodified _QKRPVHVHV_ 0 0 0 ENST00000477161.1_1_10:15256501-15262993:-|nuORF;ENST00000378116.8_1_10:15256501-15262974:-|nuORF ENST00000477161.1_1_10:15256501-15262993:-|nuORF ENST00000477161.1_1_10:15256501-15262993:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 367.220958 1098.64105 -0.2655 -9.7497E-05 -0.44136 -0.00016208 -0.70686 -0.00025957 367.22081672790523 17.896 0.46803 17.896 17.657 18.126 0 -0.049808 -1.3462E-05 NaN 2.4985 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 649460 36079 9274 24275 24291 0.0956706879385365 QKRPVHVHV 9 Unmodified _QKRPVHVHV_ 0 0 0 ENST00000477161.1_1_10:15256501-15262993:-|nuORF;ENST00000378116.8_1_10:15256501-15262974:-|nuORF ENST00000477161.1_1_10:15256501-15262993:-|nuORF ENST00000477161.1_1_10:15256501-15262993:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 367.220958 1098.64105 -0.32131 -0.00011799 -0.1237 -4.5426E-05 -0.44501 -0.00016342 367.2209109128639 19.316 0.53237 17.99 17.648 18.181 -1.3251 0.044494 0.00033649 NaN 2.4985 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 507920 36080 9274 24275 24291 0.0956706879385365 QKRQRRPL 8 Unmodified _QKRQRRPL_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|91|2|sense L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|91|2|sense L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|91|2|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2686767578125 2 541.338698 1080.66284 NaN NaN NaN NaN NaN NaN NaN 128.81 1 128.81 128.31 129.31 0 0 0 0 0.2343 1 25441 25441 0.62683 0.21856 1 36081 12048 24276 24292 35545 35545 0.12573873542419278 QKRRLYARWHR 11 Unmodified _QKRRLYARWHR_ 0 0 0 REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.395263671875 2 785.452917 1568.89128 NaN NaN NaN NaN NaN NaN NaN 115.5 1 111.02 110.52 111.52 -4.4726 0 0 0 0.23698 1 22768 22768 1.1933 0 1 + 36082 13133 24277 24293 35546 35546 0.12959046119294726 QKRRRPRYKYN 11 Unmodified _QKRRRPRYKYN_ 0 0 0 REV__ENSG00000164736|ENST00000297316|SOX17 REV__ENSG00000164736|ENST00000297316|SOX17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2698364257812 3 522.302563 1563.88586 NaN NaN NaN NaN NaN NaN NaN 117.34 1 117.34 116.84 117.84 0 0 0 0 0.22632 1 23112 23112 1.4551 0.8698 1 + 36083 17705 24278 24294 35547 35547 0.1264732253684997 QKRRRRRMLWH 11 Unmodified _QKRRRRRMLWH_ 0 0 0 REV__ENST00000579674.1_1_17:27898877-27899117:+|nuORF REV__ENST00000579674.1_1_17:27898877-27899117:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2744750976562 3 541.651421 1621.93243 0.18254 9.8874E-05 1.7975 0.00097362 1.98 0.0010725 541.9857356095548 150.24 0.10362 145.04 144.99 145.09 -5.1994 4 2 2 0 0 0 0.89136 1 29120 29120 0 0 1 1173600 + 36084 17937 24279 24295 35548 35548 0.14634483887130045 QKSKRVGRRHY 11 Unmodified _QKSKRVGRRHY_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 472.2779846191406 3 472.276126 1413.80655 NaN NaN NaN NaN NaN NaN NaN 157.67 1 152.88 152.38 153.38 -4.7885 0 0 0 0.22632 1 31359 31359 1.4074 1.376 1 36085 7465 24280 24296 35549 35549 0.11619675582710443 QKTPSEAL 8 Unmodified _QKTPSEAL_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2356262207031 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 67.198 1 67.198 66.698 67.698 0 0 0 0 0.21486 1 12985 12985 10.183 0 1 36086 3363 24281 24297 35550 35550 0.019015056264720442 QKTYIVHC 8 Unmodified _QKTYIVHC_ 0 0 0 nc|ENSG00000183878|O14607|UTY;nc|ENSG00000183878|O14607-4|UTY;ENSG00000183878|ENST00000545955|UTY nc|ENSG00000183878|O14607|UTY nc|ENSG00000183878|O14607|UTY MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.1731262207031 3 331.172505 990.495686 NaN NaN NaN NaN NaN NaN NaN 179.51 1 174.64 174.14 175.14 -4.868 0 0 0 0.21486 1 35763 35763 0.45834 0 1 36087 6878 24282 24298 35551 35551 5.8448826393942E-05 QKVVSPVLS 9 Unmodified _QKVVSPVLS_ 0 0 0 REV__RAPH1|p.P857L|1|0.23|ENSG00000173166|chr2:203440620-203440620|G/A|missense_variant REV__RAPH1|p.P857L|1|0.23|ENSG00000173166|chr2:203440620-203440620|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7322998046875 2 478.792392 955.570232 0.17584 8.4193E-05 -1.949 -0.00093318 -1.7732 -0.00084899 478.7922745991969 94.668 0.52621 90.477 90.195 90.721 -4.1912 24 14 2 0 0 0 0.40905 1 18064 18064 41.84 0 1 1559800 + 36088 24548 24283 24299 35552 35552 0.09066930965661868 QKVVSPVLS 9 Unmodified _QKVVSPVLS_ 0 0 0 REV__RAPH1|p.P857L|1|0.23|ENSG00000173166|chr2:203440620-203440620|G/A|missense_variant REV__RAPH1|p.P857L|1|0.23|ENSG00000173166|chr2:203440620-203440620|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.792392 955.570232 0.031228 1.4952E-05 -1.6796 -0.0008042 -1.6484 -0.00078925 478.79232527535515 94.448 0.59229 90.457 90.107 90.699 -3.9907 -0.012611 0.00020238 NaN 41.84 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1551900 + 36089 24548 24283 24299 0.09066930965661868 QKVWRRFHQRK 11 Unmodified _QKVWRRFHQRK_ 0 0 0 nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1;IQCA1|p.N612Kfs*25|1|0.24|ENSG00000132321|chr2:236363813-236363814|-/T|frameshift_variant;nc|ENSG00000132321|Q86XH1-2|IQCA1;IQCA1|p.Q369Tfs*10|1|0.17|ENSG00000132321|chr2:236419178-236419179|-/T|frameshift_variant nc|ENSG00000132321|Q86XH1-5|IQCA1;IQCA1|p.Q369Tfs*10|1|0.17|ENSG00000132321|chr2:236419178-236419179|-/T|frameshift_variant nc|ENSG00000132321|Q86XH1-5|IQCA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6852416992188 3 523.639287 1567.89603 NaN NaN NaN NaN NaN NaN NaN 157.18 1 157.18 156.68 157.68 0 0 0 0 0.23698 1 31543 31543 0.40827 0 1 36090 3715;11950 24284 24300 35553 35553 0.13479930262064954 QKWPSAQA 8 Unmodified _QKWPSAQA_ 0 0 0 ENST00000568177.1_1_14:103994764-103994866:-|nuORF ENST00000568177.1_1_14:103994764-103994866:-|nuORF ENST00000568177.1_1_14:103994764-103994866:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2380676269531 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 69.909 1 66.442 65.942 66.942 -3.467 0 0 0 0.21171 1 13228 13228 15.847 7.2539 1 36091 11393 24285 24301 35554 35554 0.00036345066178000707 QKWQQVWQEI 10 Unmodified _QKWQQVWQEI_ 0 0 0 nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1 nc|ENSG00000186625|O75449-2|KATNA1 nc|ENSG00000186625|O75449-2|KATNA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2373046875 3 458.238455 1371.69353 NaN NaN NaN NaN NaN NaN NaN 119.74 1 115.27 114.77 115.77 -4.467 0 0 0 2.8426 1 23052 23052 0.69767 0 1 36092 7069 24286 24302 35555 35555 0.022555623461357754 QKYLYFGF 8 Unmodified _QKYLYFGF_ 0 0 0 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.271484375 2 533.273835 1064.53312 NaN NaN NaN NaN NaN NaN NaN 18.378 1 16.863 16.363 17.363 -1.5148 0 0 0 0.2396 1 2722 2722 0.12286 0 1 + 36093 17709 24287 24303 35556 35556 0.0034325941990118736 QLAEDLKKV 9 Unmodified _QLAEDLKKV_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2616577148438 2 522.308406 1042.60226 -0.27971 -0.00014609 -0.586 -0.00030608 -0.86571 -0.00045217 522.3084000721901 58.921 0.39431 56.011 55.784 56.179 -2.9105 18 10 2 0 0 0 0.81359 1 11323 11323 11.495 0 1 1093800 36094 7503 24288 24304 35557 35557 0.0826629864880033 QLAEDLKKV 9 Unmodified _QLAEDLKKV_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2608032226562 2 522.308406 1042.60226 -0.62402 -0.00032593 0.039092 2.0418E-05 -0.58493 -0.00030551 522.3088396004429 59.296 0.50136 55.982 55.742 56.243 -3.3139 20 13 2 0 0 0 0.80264 1 11027 11027 17.113 3.605 1 1025900 36095 7503 24288 24304 35558 35558 0.0826629864880033 QLAEDLKKV 9 Unmodified _QLAEDLKKV_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2615356445312 2 522.308406 1042.60226 0.16756 8.7516E-05 -1.3643 -0.0007126 -1.1968 -0.00062508 522.3080258601293 59.272 0.44592 56.057 55.852 56.298 -3.2147 18 12 2 0 0 0 0.81359 1 11089 11089 16.149 7.5558 1 1317100 36096 7503 24288 24304 35559 35559 0.0826629864880033 QLAEDLKKV 9 Unmodified _QLAEDLKKV_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 522.308406 1042.60226 0.023905 1.2486E-05 -1.6206 -0.00084648 -1.5967 -0.00083399 522.8086245783447 56.367 0.45563 56.367 56.151 56.607 0 0.26245 -0.00084375 NaN 17.113 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 987940 36097 7503 24288 24304 0.0826629864880033 QLAERRLRQRL 11 Unmodified _QLAERRLRQRL_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2146301269531 4 360.473292 1437.86406 0.19831 7.1485E-05 -0.5034 -0.00018146 -0.3051 -0.00010998 360.4730967126274 30.461 0.45487 28.345 28.154 28.609 -2.1167 25 12 3 0 0 0 0.96051 1 5506 5506 3.8459 2.8323 1 972930 36098 6634 24289 24305 35560 35560 0.16264517788249577 QLAESVANV 9 Unmodified _QLAESVANV_ 0 0 0 ENSG00000151491|ENST00000281172|EPS8;nc|ENSG00000151491|Q12929-2|EPS8 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2566223144531 2 465.748182 929.481811 0.255 0.00011876 0.35771 0.0001666 0.61271 0.00028537 465.748252842812 74.889 0.42575 74.889 74.781 75.206 0 14 11 2 0 0 0 0.50308 1 14532 14532 31.268 2.1868 1 839670 36099 4870 24290 24306 35561 35561 0.014248906551983964 QLAESVANV 9 Unmodified _QLAESVANV_ 0 0 0 ENSG00000151491|ENST00000281172|EPS8;nc|ENSG00000151491|Q12929-2|EPS8 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25677490234375 2 465.748182 929.481811 -0.050947 -2.3728E-05 0.20061 9.3435E-05 0.14967 6.9706E-05 465.7481848087298 78.319 0.64766 74.856 74.465 75.113 -3.4633 22 17 2 0 0 0 0.23492 1 15272 15272 53.833 19.431 1 942920 36100 4870 24290 24306 35562 35562 0.014248906551983964 QLAGAMAYL 9 Unmodified _QLAGAMAYL_ 0 0 0 ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1 ENSG00000174292|ENST00000688331|TNK1 ENSG00000174292|ENST00000688331|TNK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.1282958984375 3 313.165239 936.473888 NaN NaN NaN NaN NaN NaN NaN 90.751 1 86.892 86.392 87.392 -3.8595 0 0 0 0.23508 1 17758 17758 2.7352 1.0826 1 36101 6340 24291 24307 35563 35563 0.0031104013405638398 QLAGAMAYL 9 Unmodified _QLAGAMAYL_ 0 0 0 ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1 ENSG00000174292|ENST00000688331|TNK1 ENSG00000174292|ENST00000688331|TNK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.16339111328125 3 313.165239 936.473888 NaN NaN NaN NaN NaN NaN NaN 78.768 1 75.092 74.592 75.592 -3.676 0 0 0 0.23508 1 15005 15005 2.7352 0.64919 1 36102 6340 24291 24307 35564 35564 0.0031104013405638398 QLAIMPPHH 9 Unmodified _QLAIMPPHH_ 0 0 0 REV__YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant REV__YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2769775390625 2 522.276386 1042.53822 -0.055863 -2.9176E-05 1.5034 0.00078517 1.4475 0.000756 522.2772154904005 45.32 0.24453 42.454 42.327 42.572 -2.8666 9 6 2 0 0 0 0.68435 1 8226 8226 7.2892 0.56607 1 354270 + 36103 14741 24292 24308 35565 35565 0.018652400108749134 QLANRIICL 9 Unmodified _QLANRIICL_ 0 0 0 nc|ENSG00000128683|Q99259-4|GAD1 nc|ENSG00000128683|Q99259-4|GAD1 nc|ENSG00000128683|Q99259-4|GAD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2688598632812 2 522.305144 1042.59573 NaN NaN NaN NaN NaN NaN NaN 162.28 1 157.49 156.99 157.99 -4.7898 0 0 0 0.23508 1 32288 32288 12.532 0.89125 1 36104 12312 24293 24309 35566 35566 0.0761408221644615 QLAQPTLRL 9 Unmodified _QLAQPTLRL_ 0 0 0 ATG4D|p.R456H|1|0.27|ENSG00000130734|chr19:10553009-10553009|G/A|missense_variant;nc|ENSG00000130734|Q86TL0-2|ATG4D;ENSG00000130734|ENST00000309469|ATG4D ATG4D|p.R456H|1|0.27|ENSG00000130734|chr19:10553009-10553009|G/A|missense_variant ATG4D|p.R456H|1|0.27|ENSG00000130734|chr19:10553009-10553009|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.2023010253906 3 347.213469 1038.61858 -0.35209 -0.00012225 0.06116 2.1236E-05 -0.29093 -0.00010102 347.21346384102185 58.645 1.6041 55.734 54.714 56.318 -2.9105 117 45 3 0 0 0 0.37458 1 11327 11327 1.6919 0.8167 1 7468800 36105 252 24294 24310 35567 35567 0.10081424605550637 QLAQPTLRL 9 Unmodified _QLAQPTLRL_ 0 0 0 ATG4D|p.R456H|1|0.27|ENSG00000130734|chr19:10553009-10553009|G/A|missense_variant;nc|ENSG00000130734|Q86TL0-2|ATG4D;ENSG00000130734|ENST00000309469|ATG4D ATG4D|p.R456H|1|0.27|ENSG00000130734|chr19:10553009-10553009|G/A|missense_variant ATG4D|p.R456H|1|0.27|ENSG00000130734|chr19:10553009-10553009|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 347.213469 1038.61858 -0.48377 -0.00016797 0.36288 0.000126 -0.12089 -4.1975E-05 347.21357150903367 56.064 1.445 56.064 55.369 56.814 0 0.16492 0.00015232 NaN 1.6919 116 40 4 NaN NaN NaN NaN 0 NaN NaN 0 9352000 36106 252 24294 24310 0.10081424605550637 QLARSACT 8 Unmodified _QLARSACT_ 0 0 0 REV__ENSG00000131238|ENST00000642050|PPT1 REV__ENSG00000131238|ENST00000642050|PPT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2508850097656 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 87.416 1 83.421 82.921 83.921 -3.9953 0 0 0 0.21486 1 16646 16646 4.3292 1.44 1 + 36107 16062 24295 24311 35568 35568 -0.012835877025963782 QLARVTHM 8 Unmodified _QLARVTHM_ 0 0 0 ENSG00000198919|ENST00000361582|DZIP3;ENST00000495008.5_1_3:108373019-108406879:+|nuORF ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.1755676269531 3 319.17625 954.50692 NaN NaN NaN NaN NaN NaN NaN 93.019 1 88.875 88.375 89.375 -4.1435 0 0 0 0.21486 1 17727 17727 1.4819 0.41044 1 36108 7526 24296 24312 35569 35569 0.027846669767768617 QLASLPPAGDI 11 Unmodified _QLASLPPAGDI_ 0 0 0 ENSG00000219073|ENST00000337107|CELA3B;ENSG00000142789|ENST00000290122|CELA3A ENSG00000219073|ENST00000337107|CELA3B ENSG00000219073|ENST00000337107|CELA3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.280029296875 2 541.298039 1080.58152 0.34838 0.00018858 -0.07839 -4.2432E-05 0.26999 0.00014614 541.2980229250608 123.81 0.8039 119.22 118.89 119.7 -4.5926 35 22 2 0 0 0 0.42926 1 23813 23813 28.495 0.86571 1 2948500 36109 4442 24297 24313 35570 35570 0.04445708269145143 QLASSLAA 8 Unmodified _QLASSLAA_ 0 0 0 REV__EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant REV__EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2152404785156 2 380.713611 759.412668 -0.5012 -0.00019081 0.48527 0.00018475 -0.015927 -6.0636E-06 380.7138058117411 39.592 0.59254 37.043 36.719 37.311 -2.5491 35 16 3 0 0 0 0.73936 1 7320 7320 8.5933 0 1 2672000 + 36110 18840 24298 24314 35571 35571 0.023338514262945864 QLCEVSNHY 9 Unmodified _QLCEVSNHY_ 0 0 0 REV__ENST00000414369.2_1_2:53984069-54014663:-|nuORF REV__ENST00000414369.2_1_2:53984069-54014663:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7674560546875 2 546.742573 1091.47059 0.63809 0.00034887 -0.88683 -0.00048487 -0.24875 -0.000136 546.7420762020843 48.358 0.87801 48.358 47.858 48.736 0 58 24 3 0 0 0 0.31714 1 9162 9162 30.637 0 1 15538000 + 36111 15414 24299 24315 35572 35572 -0.07148254710591573 QLCWHKELA 9 Unmodified _QLCWHKELA_ 0 0 0 REV__ENST00000178638.7_1_15:63615668-63615971:-|nuORF REV__ENST00000178638.7_1_15:63615668-63615971:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 565.3078002929688 2 564.286951 1126.55935 0.5458 0.00030799 -1.219 -0.00068785 -0.67316 -0.00037986 564.2862537956914 171.7 0.3564 166.82 166.61 166.97 -4.873 24 9 3 0 0 0 0.31728 1 34059 34059 2.6312 0.88896 1 9518300 + 36112 19986 24300 24316 35573 35573 0.001132053197352434 QLDALMVNHY 10 Unmodified _QLDALMVNHY_ 0 0 0 ENSG00000187492|ENST00000412678|CDHR4;nc|ENSG00000187492|A6H8M9-2|CDHR4 ENSG00000187492|ENST00000412678|CDHR4 ENSG00000187492|ENST00000412678|CDHR4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2821655273438 2 602.294973 1202.57539 NaN NaN NaN NaN NaN NaN NaN 74.911 1 71.317 70.817 71.817 -3.594 0 0 0 0.22576 1 14234 14234 14.838 4.7643 1 36113 7107 24301 24317 35574 35574 -0.017791332340038934 QLDERTFSV 9 Unmodified _QLDERTFSV_ 0 0 0 nc|ENSG00000186417|Q6ZMI3-2|GLDN;ENSG00000186417|ENST00000335449|GLDN nc|ENSG00000186417|Q6ZMI3-2|GLDN nc|ENSG00000186417|Q6ZMI3-2|GLDN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7772827148438 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 94.552 1 90.36 89.86 90.86 -4.1911 0 0 0 0.19512 1 18037 18037 12.241 11.026 1 36114 7055 24302 24318 35575 35575 -0.0026405277030789875 QLDHVNVYY 9 Unmodified _QLDHVNVYY_ 0 0 0 RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1 RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3284912109375 2 575.780013 1149.54547 0.015794 9.094E-06 0.67332 0.00038769 0.68912 0.00039678 575.7803897914878 94.531 0.69565 90.54 90.107 90.803 -3.9907 29 19 2 0 0 0 0.09885 1 18473 18473 56.177 25.541 1 3395000 36115 6271 24303 24319 35576 35576 -0.023317489077271603 QLDHVNVYY 9 Unmodified _QLDHVNVYY_ 0 0 0 RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1 RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3283081054688 2 575.780013 1149.54547 0.27619 0.00015902 0.28749 0.00016553 0.56368 0.00032455 575.7800276190749 94.578 0.66557 90.387 89.982 90.648 -4.1911 29 18 2 0 0 0 0.039785 3 18011 18011;18051;18053 75.761 37.787 1 2694700 36116 6271 24303 24319 35577;35578;35579 35577 -0.023317489077271603 QLDHVNVYY 9 Unmodified _QLDHVNVYY_ 0 0 0 RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1 RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3381958007812 2 575.780013 1149.54547 0.042778 2.463E-05 0.43348 0.00024959 0.47626 0.00027422 575.7800979762054 94.255 0.48299 90.411 90.16 90.643 -3.844 24 13 2 0 0 0 0.041554 1 18048 18048 74.929 28.908 1 3245100 36117 6271 24303 24319 35580 35580 -0.023317489077271603 QLDKNSEVY 9 Unmodified _QLDKNSEVY_ 0 0 0 ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B;ENSG00000171262|ENST00000397609|FAM98B ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B nc|ENSG00000171262|Q52LJ0-1|FAM98B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.778076171875 2 548.269478 1094.5244 0.32179 0.00017643 0.10578 5.7994E-05 0.42756 0.00023442 548.2694754253656 34.572 0.78267 34.572 34.178 34.961 0 61 22 4 0 0 0 0.021579 1 6356 6356 99.755 38.398 1 16600000 36118 8606;6133 24304 24320 35581 35581 -0.019077590072356543 QLDKNSEVY 9 Unmodified _QLDKNSEVY_ 0 0 0 ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B;ENSG00000171262|ENST00000397609|FAM98B ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B nc|ENSG00000171262|Q52LJ0-1|FAM98B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.776123046875 2 548.269478 1094.5244 -0.21324 -0.00011692 0.622 0.00034102 0.40876 0.00022411 548.2697873786042 37.091 0.69119 34.622 34.259 34.951 -2.4688 56 19 4 0 0 0 0.050901 1 6870 6870 75.761 33.921 1 22256000 36119 8606;6133 24304 24320 35582 35582 -0.019077590072356543 QLDKNSEVY 9 Unmodified _QLDKNSEVY_ 0 0 0 ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B;ENSG00000171262|ENST00000397609|FAM98B ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B nc|ENSG00000171262|Q52LJ0-1|FAM98B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7753295898438 2 548.269478 1094.5244 0.13024 7.1405E-05 0.16262 8.9158E-05 0.29285 0.00016056 548.2695192890001 37.001 0.75228 34.653 34.311 35.063 -2.3479 62 21 4 0 0 0 0.62921 1 6601 6601 30.637 3.7529 1 21655000 36120 8606;6133 24304 24320 35583 35583 -0.019077590072356543 QLDKNSEVY 9 Unmodified _QLDKNSEVY_ 0 0 0 ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B;ENSG00000171262|ENST00000397609|FAM98B ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B nc|ENSG00000171262|Q52LJ0-1|FAM98B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7791748046875 2 548.269478 1094.5244 0.32272 0.00017694 0.044263 2.4268E-05 0.36698 0.0002012 548.2694530078707 36.983 0.73865 34.646 34.312 35.05 -2.3375 61 20 5 0 0 0 0.082138 1 6537 6537 42.232 23.618 1 18185000 36121 8606;6133 24304 24320 35584 35584 -0.019077590072356543 QLDPIYVAY 9 Unmodified _QLDPIYVAY_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;DIP2C|p.D1545G|1|0.1|ENSG00000151240|chr10:277362-277362|T/C|missense_variant;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.280517578125 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 151.18 1 146.43 145.93 146.93 -4.7523 0 0 0 0.17061 1 30032 30032 27.629 13.723 1 36122 5248;4855;1368 24305 24321 35585 35585 0.012109208661286175 QLDPIYVAY 9 Unmodified _QLDPIYVAY_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;DIP2C|p.D1545G|1|0.1|ENSG00000151240|chr10:277362-277362|T/C|missense_variant;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.266845703125 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 151.33 1 146.57 146.07 147.07 -4.7523 0 0 0 0.046184 1 30063 30063 36.81 27.897 1 36123 5248;4855;1368 24305 24321 35586 35586 0.012109208661286175 QLDPIYVAY 9 Unmodified _QLDPIYVAY_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;DIP2C|p.D1545G|1|0.1|ENSG00000151240|chr10:277362-277362|T/C|missense_variant;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2814331054688 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 151.43 1 146.68 146.18 147.18 -4.7523 0 0 0 0.17061 1 30083 30083 27.629 8.3718 1 36124 5248;4855;1368 24305 24321 35587 35587 0.012109208661286175 QLDPIYVAY 9 Unmodified _QLDPIYVAY_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;DIP2C|p.D1545G|1|0.1|ENSG00000151240|chr10:277362-277362|T/C|missense_variant;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.28271484375 2 541.281857 1080.54916 0.45002 0.00024359 2.4628 0.0013331 2.9128 0.0015766 541.7857421431241 151.64 0.77318 146.47 146.14 146.91 -5.1759 32 21 2 0 0 0 0.13932 3 29380 29380;29426;29431 45.7 20.709 1 2361800 36125 5248;4855;1368 24305 24321 35588;35589;35590 35588 0.012109208661286175 QLDPQTVGV 9 Unmodified _QLDPQTVGV_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7420959472656 2 478.756007 955.497461 -0.068073 -3.2591E-05 -0.61064 -0.00029235 -0.67871 -0.00032494 478.7560981526616 85.722 0.61391 85.722 85.357 85.971 0 27 16 2 0 0 0 0.04795 1 16759 16759 71.922 13.243 1 3141900 36126 7250 24306 24322 35591 35591 0.017931771722601297 QLDPQTVGV 9 Unmodified _QLDPQTVGV_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72357177734375 2 478.756007 955.497461 -0.070197 -3.3607E-05 0.45033 0.0002156 0.38013 0.00018199 478.75625140709803 89.669 0.74202 85.81 85.304 86.046 -3.8595 36 20 2 0 0 0 0.13813 1 17511 17511 53.833 15.859 1 2782600 36127 7250 24306 24322 35592 35592 0.017931771722601297 QLDPQTVGV 9 Unmodified _QLDPQTVGV_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7236328125 2 478.756007 955.497461 0.18352 8.7861E-05 -0.19791 -9.475E-05 -0.014388 -6.8886E-06 478.75614535234115 89.562 0.70197 85.784 85.414 86.116 -3.7779 44 19 3 0 0 0 0.56623 1 17105 17105 21.537 3.3906 1 3297200 36128 7250 24306 24322 35593 35593 0.017931771722601297 QLDPRLLSH 9 Unmodified _QLDPRLLSH_ 0 0 0 REV__ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant REV__ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2047119140625 3 360.204974 1077.59309 -0.38757 -0.00013961 0.16054 5.7828E-05 -0.22703 -8.1778E-05 360.2049994492009 49.991 0.56175 47.11 46.798 47.36 -2.8811 39 15 4 0 0 0 0.31598 2 9437 9437;9485 30.703 0.63195 1 2387100 + 36129 13113 24307 24323 35594;35595 35594 0.0573995008314796 QLDPRLLSH 9 Unmodified _QLDPRLLSH_ 0 0 0 REV__ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant REV__ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20513916015625 3 360.204974 1077.59309 0.039167 1.4108E-05 -0.017704 -6.3771E-06 0.021463 7.7309E-06 360.20490642786893 50.169 0.56694 47.17 46.904 47.471 -2.999 28 16 2 0 0 0 0.5354 1 9151 9151 17.443 4.57 1 2751300 + 36130 13113 24307 24323 35596 35596 0.0573995008314796 QLDPRLLSH 9 Unmodified _QLDPRLLSH_ 0 0 0 REV__ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant REV__ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20501708984375 3 360.204974 1077.59309 -0.75647 -0.00027248 0.88631 0.00031925 0.12984 4.6769E-05 360.20528624877977 50.166 0.66856 47.159 46.74 47.408 -3.0068 34 19 2 0 0 0 0.58077 1 9187 9187 14.405 2.1647 1 2702900 + 36131 13113 24307 24323 35597 35597 0.0573995008314796 QLDPRLLSH 9 Unmodified _QLDPRLLSH_ 0 0 0 REV__ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant REV__ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 360.204974 1077.59309 -0.38757 -0.00013961 0.16054 5.7828E-05 -0.22703 -8.1778E-05 360.2049994492009 49.991 0.56175 47.11 46.798 47.36 -2.8811 -0.0304 0.00013022 NaN 30.703 39 15 4 NaN NaN NaN NaN 0 NaN NaN 0 2387100 + 36132 13113 24307 24323 0.0573995008314796 QLDPRLLSH 9 Unmodified _QLDPRLLSH_ 0 0 0 REV__ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant REV__ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 360.204974 1077.59309 0.039167 1.4108E-05 -0.017704 -6.3771E-06 0.021463 7.7309E-06 360.20490642786893 50.169 0.56694 47.17 46.904 47.471 -2.999 0.029897 -6.2396E-05 NaN 30.703 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2751300 + 36133 13113 24307 24323 0.0573995008314796 QLDSAQKNLY 10 Unmodified _QLDSAQKNLY_ 0 0 0 ENST00000522017.5_1_X:46382546-46401540:-|nuORF;KRBOX4|p.T73Pfs*21|1|0.1|ENSG00000147121|chrX:46463266-46463266|G/-|frameshift_variant;ENST00000521626.5_1_X:46382546-46401540:-|nuORF;nc|ENSG00000147121|Q5JUW0-3|KRBOX4;nc|ENSG00000147121|Q5JUW0-2|KRBOX4;ENSG00000147121|ENST00000344302|KRBOX4;ENST00000453909.3_1_X:46387515-46388371:-|nuORF;ZNF674|p.A505Pfs*32|1|0.2|ENSG00000251192|chrX:46500077-46500077|T/-|frameshift_variant;nc|ENSG00000251192|Q2M3X9-2|ZNF674;ENSG00000251192|ENST00000683375|ZNF674;nc|ENSG00000251192|Q2M3X9|ZNF674 ENST00000522017.5_1_X:46382546-46401540:-|nuORF ENST00000522017.5_1_X:46382546-46401540:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2676391601562 2 590.303852 1178.59315 0.51946 0.00030664 -0.22082 -0.00013035 0.29863 0.00017628 590.3037086634386 50.6 1.035 50.6 50.095 51.131 0 86 29 4 0 0 0 1.8645E-125 2 9558 9558;9585 250.47 147.05 1 14019000 36134 4682 24308 24324 35598;35599 35598 0.010999052924944408 QLDSAQKNLY 10 Unmodified _QLDSAQKNLY_ 0 0 0 ENST00000522017.5_1_X:46382546-46401540:-|nuORF;KRBOX4|p.T73Pfs*21|1|0.1|ENSG00000147121|chrX:46463266-46463266|G/-|frameshift_variant;ENST00000521626.5_1_X:46382546-46401540:-|nuORF;nc|ENSG00000147121|Q5JUW0-3|KRBOX4;nc|ENSG00000147121|Q5JUW0-2|KRBOX4;ENSG00000147121|ENST00000344302|KRBOX4;ENST00000453909.3_1_X:46387515-46388371:-|nuORF;ZNF674|p.A505Pfs*32|1|0.2|ENSG00000251192|chrX:46500077-46500077|T/-|frameshift_variant;nc|ENSG00000251192|Q2M3X9-2|ZNF674;ENSG00000251192|ENST00000683375|ZNF674;nc|ENSG00000251192|Q2M3X9|ZNF674 ENST00000522017.5_1_X:46382546-46401540:-|nuORF ENST00000522017.5_1_X:46382546-46401540:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 590.303852 1178.59315 0.24052 0.00014198 -0.14199 -8.3819E-05 0.098524 5.8159E-05 590.3037241475827 53.674 0.72982 50.79 50.42 51.15 -2.8837 0.03172 1.2269E-05 NaN 250.47 56 20 4 NaN NaN NaN NaN 0 NaN NaN 0 12954000 36135 4682 24308 24324 0.010999052924944408 QLDSAQKNLY 10 Unmodified _QLDSAQKNLY_ 0 0 0 ENST00000522017.5_1_X:46382546-46401540:-|nuORF;KRBOX4|p.T73Pfs*21|1|0.1|ENSG00000147121|chrX:46463266-46463266|G/-|frameshift_variant;ENST00000521626.5_1_X:46382546-46401540:-|nuORF;nc|ENSG00000147121|Q5JUW0-3|KRBOX4;nc|ENSG00000147121|Q5JUW0-2|KRBOX4;ENSG00000147121|ENST00000344302|KRBOX4;ENST00000453909.3_1_X:46387515-46388371:-|nuORF;ZNF674|p.A505Pfs*32|1|0.2|ENSG00000251192|chrX:46500077-46500077|T/-|frameshift_variant;nc|ENSG00000251192|Q2M3X9-2|ZNF674;ENSG00000251192|ENST00000683375|ZNF674;nc|ENSG00000251192|Q2M3X9|ZNF674 ENST00000522017.5_1_X:46382546-46401540:-|nuORF ENST00000522017.5_1_X:46382546-46401540:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 590.303852 1178.59315 0.4698 0.00027733 -0.34023 -0.00020084 0.12957 7.6488E-05 590.3035354393955 53.976 0.66022 50.84 50.453 51.114 -3.1352 0.082174 -0.00022177 NaN 250.47 50 18 4 NaN NaN NaN NaN 0 NaN NaN 0 9913300 36136 4682 24308 24324 0.010999052924944408 QLDSAQKNLY 10 Unmodified _QLDSAQKNLY_ 0 0 0 ENST00000522017.5_1_X:46382546-46401540:-|nuORF;KRBOX4|p.T73Pfs*21|1|0.1|ENSG00000147121|chrX:46463266-46463266|G/-|frameshift_variant;ENST00000521626.5_1_X:46382546-46401540:-|nuORF;nc|ENSG00000147121|Q5JUW0-3|KRBOX4;nc|ENSG00000147121|Q5JUW0-2|KRBOX4;ENSG00000147121|ENST00000344302|KRBOX4;ENST00000453909.3_1_X:46387515-46388371:-|nuORF;ZNF674|p.A505Pfs*32|1|0.2|ENSG00000251192|chrX:46500077-46500077|T/-|frameshift_variant;nc|ENSG00000251192|Q2M3X9-2|ZNF674;ENSG00000251192|ENST00000683375|ZNF674;nc|ENSG00000251192|Q2M3X9|ZNF674 ENST00000522017.5_1_X:46382546-46401540:-|nuORF ENST00000522017.5_1_X:46382546-46401540:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 590.303852 1178.59315 -0.03125 -1.8447E-05 0.15332 9.0505E-05 0.12207 7.2058E-05 590.3038591649031 53.898 0.76742 50.803 50.409 51.177 -3.0954 0.044646 0.00036092 NaN 250.47 56 21 4 NaN NaN NaN NaN 0 NaN NaN 0 11549000 36137 4682 24308 24324 0.010999052924944408 QLDSAVKNLY 10 Unmodified _QLDSAVKNLY_ 0 0 0 ENSG00000149054|ENST00000278319|ZNF215;ZNF215|p.R224Dfs*3|1|0.3|ENSG00000149054|chr11:6943593-6943593|A/-|frameshift_variant;nc|ENSG00000149054|Q9UL58-2|ZNF215 ENSG00000149054|ENST00000278319|ZNF215 ENSG00000149054|ENST00000278319|ZNF215 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32958984375 2 575.808771 1149.60299 0.043484 2.5039E-05 0.37642 0.00021675 0.41991 0.00024179 575.8089242201344 96.19 0.40031 92.141 91.86 92.261 -4.0496 31 11 4 0 0 0 4.7676999999999996E-88 4 18871 18823;18828;18831;18871 226.55 130.44 1 7190800 36138 4768 24309 24325 35600;35601;35602;35603 35603 0.034170932978668134 QLDSAVKNLY 10 Unmodified _QLDSAVKNLY_ 0 0 0 ENSG00000149054|ENST00000278319|ZNF215;ZNF215|p.R224Dfs*3|1|0.3|ENSG00000149054|chr11:6943593-6943593|A/-|frameshift_variant;nc|ENSG00000149054|Q9UL58-2|ZNF215 ENSG00000149054|ENST00000278319|ZNF215 ENSG00000149054|ENST00000278319|ZNF215 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3109741210938 2 575.808771 1149.60299 0.2094 0.00012058 0.4164 0.00023977 0.6258 0.00036034 575.8088722627722 96.295 0.35146 92.06 91.808 92.16 -4.2348 21 9 3 0 0 0 3.7096E-57 1 18388 18388 209.87 113.76 1 3708100 36139 4768 24309 24325 35604 35604 0.034170932978668134 QLDSAVKNLY 10 Unmodified _QLDSAVKNLY_ 0 0 0 ENSG00000149054|ENST00000278319|ZNF215;ZNF215|p.R224Dfs*3|1|0.3|ENSG00000149054|chr11:6943593-6943593|A/-|frameshift_variant;nc|ENSG00000149054|Q9UL58-2|ZNF215 ENSG00000149054|ENST00000278319|ZNF215 ENSG00000149054|ENST00000278319|ZNF215 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3303833007812 2 575.808771 1149.60299 -0.014766 -8.5025E-06 0.4705 0.00027092 0.45574 0.00026242 575.809088301785 95.992 0.33811 92.111 91.888 92.226 -3.881 16 9 2 0 0 0 1.7E-11 3 18418 18408;18416;18418 160.69 71.289 1 4074200 36140 4768 24309 24325 35605;35606;35607 35607 0.034170932978668134 QLDSIVEQL 9 Unmodified _QLDSIVEQL_ 0 0 0 REV__ENST00000496204.1_1_5:131931266-131935763:+|nuORF REV__ENST00000496204.1_1_5:131931266-131935763:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2567138671875 2 522.782222 1043.54989 -0.3356 -0.00017545 0.38324 0.00020035 0.047638 2.4905E-05 522.7823074712469 103.72 0.77722 99.505 99.147 99.924 -4.2183 50 22 3 0 0 0 0.11402 1 20396 20396 60.074 6.2411 1 4482500 + 36141 15346 24310 24326 35608 35608 0.029857155152058112 QLDSSSSRY 9 Unmodified _QLDSSSSRY_ 0 0 0 COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1 COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.267333984375 2 521.743628 1041.4727 0.2189 0.00011421 -0.063125 -3.2935E-05 0.15577 8.1273E-05 521.7435645090065 22.673 0.32223 22.673 22.466 22.788 0 15 8 2 0 0 0 0.11519 1 3829 3829 61.602 15.902 1 2910900 36142 607 24311 24327 35609 35609 -0.04637502701120866 QLDSSSSRY 9 Unmodified _QLDSSSSRY_ 0 0 0 COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1 COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.280517578125 2 521.743628 1041.4727 0.71776 0.00037449 -0.51442 -0.00026839 0.20334 0.00010609 521.7433254945239 24.242 0.42475 22.689 22.425 22.85 -1.5532 25 11 3 0 0 0 0.52347 1 4234 4234 32.037 7.0465 1 2439500 36143 607 24311 24327 35610 35610 -0.04637502701120866 QLDSSSSRY 9 Unmodified _QLDSSSSRY_ 0 0 0 COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1 COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2816162109375 2 521.743628 1041.4727 -0.72814 -0.0003799 0.87879 0.0004585 0.15065 7.86E-05 521.7440706650893 24.139 0.35203 22.605 22.362 22.714 -1.5342 23 9 3 0 0 0 0.37645 1 3933 3933 38.615 38.615 1 2275000 36144 607 24311 24327 35611 35611 -0.04637502701120866 QLDSSSSRY 9 Unmodified _QLDSSSSRY_ 0 0 0 COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1 COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2684936523438 2 521.743628 1041.4727 -0.23351 -0.00012183 0.38367 0.00020018 0.15015 7.8342E-05 521.7438162855595 24.37 0.41512 22.516 22.227 22.642 -1.8534 24 11 3 0 0 0 0.4398 1 3959 3959 28.495 19.111 1 1624800 36145 607 24311 24327 35612 35612 -0.04637502701120866 QLDTHMELY 9 Unmodified _QLDTHMELY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.33837890625 2 575.265881 1148.51721 0.64749 0.00037248 0.74556 0.0004289 1.3931 0.00080138 575.2655633951504 103.49 0.72655 103.49 103.13 103.86 0 84 20 6 0 0 0 0.22334 1 20326 20326 36.044 12.896 1 14132000 36146 3487;12310 24312 24328 35613 35613 -0.05110814879276404 QLDTHMELY 9 Unmodified _QLDTHMELY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.310791015625 2 575.265881 1148.51721 -0.49387 -0.0002841 0.47605 0.00027386 -0.017815 -1.0249E-05 575.266226525005 107.84 0.72985 103.52 103.14 103.87 -4.32 54 20 4 0 0 0 0.095051 1 21229 21229 57.471 28.985 1 13934000 36147 3487;12310 24312 24328 35614 35614 -0.05110814879276404 QLDTHMELY 9 Unmodified _QLDTHMELY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3128051757812 2 575.265881 1148.51721 0.011295 6.4978E-06 -0.033895 -1.9499E-05 -0.0226 -1.3001E-05 575.2659525662561 107.89 0.8616 103.48 103.09 103.95 -4.4121 65 24 4 0 0 0 0.22334 1 20699 20699 36.044 12.896 1 11662000 36148 3487;12310 24312 24328 35615 35615 -0.05110814879276404 QLDVCVEIPQ 10 Unmodified _QLDVCVEIPQ_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;ENST00000462259.5_1_1:234527325-234536616:-|nuORF ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 572.3141479492188 2 572.289356 1142.56416 0.50064 0.00028651 -3.0808 -0.0017631 -2.5802 -0.0014766 572.2877238512771 165.4 0.13531 160.45 160.39 160.53 -4.9484 5 3 2 0 0 0 0.871 1 32327 32327 6.2058 1.4498 1 5873900 36149 1299 24313 24329 35616 35616 -0.0014195532817211642 QLEDDDDDDDD 11 Unmodified _QLEDDDDDDDD_ 0 0 0 REV__ENSG00000176887|ENST00000322002|SOX11 REV__ENSG00000176887|ENST00000322002|SOX11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.221923828125 3 437.144391 1308.41134 NaN NaN NaN NaN NaN NaN NaN 16.959 1 15.687 15.187 16.187 -1.2722 0 0 0 0.22632 1 2471 2471 0.094841 0 1 + 36150 18523 24314 24330 35617 35617 -0.23052568772413906 QLEDIIGRV 9 Unmodified _QLEDIIGRV_ 0 0 0 REV__FLCN|p.H429Pfs*27|1|0.31|ENSG00000154803|chr17:17216394-17216395|-/G|frameshift_variant REV__FLCN|p.H429Pfs*27|1|0.31|ENSG00000154803|chr17:17216394-17216395|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2802124023438 2 521.798206 1041.58186 -0.35018 -0.00018272 0.61429 0.00032054 0.26412 0.00013782 521.7984994023349 70.973 0.67416 67.724 67.354 68.028 -3.2492 53 18 4 0 0 0 0.5354 1 13750 13750 24.021 3.606 1 15633000 + 36151 17196 24315 24331 35618 35618 0.06273127989015848 QLEEAQVF 8 Unmodified _QLEEAQVF_ 0 0 0 ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.771240234375 2 482.242732 962.470912 0.34805 0.00016784 -0.057715 -2.7832E-05 0.29033 0.00014001 482.242646353728 118 0.85429 113.59 113.11 113.96 -4.4088 39 23 2 0 0 0 0.97966 1 22765 22765 7.2892 2.5332 1 1836000 36152 258 24316 24332 35619 35619 -0.011825117190937817 QLEEAQVF 8 Unmodified _QLEEAQVF_ 0 0 0 ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 482.242732 962.470912 0.26196 0.00012633 -0.25093 -0.00012101 0.01103 5.3193E-06 482.24253364819316 118.06 0.65936 113.56 113.17 113.83 -4.502 -0.0019024 -6.1249E-07 NaN 7.2892 35 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2355000 36153 258 24316 24332 -0.011825117190937817 QLEEAQVF 8 Unmodified _QLEEAQVF_ 0 0 0 ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 482.242732 962.470912 0.48528 0.00023402 -0.41713 -0.00020116 0.068149 3.2864E-05 482.24250305063595 118.14 0.75385 113.53 113.17 113.92 -4.6106 -0.029704 -0.00016091 NaN 7.2892 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2686100 36154 258 24316 24332 -0.011825117190937817 QLEEEEEEEEG 11 Unmodified _QLEEEEEEEEG_ 0 0 0 REV__ENST00000461416.1_1_7:128582135-128587139:+|nuORF REV__ENST00000461416.1_1_7:128582135-128587139:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 451.1672058105469 3 450.512415 1348.51541 -0.091208 -4.109E-05 0.37003 0.0001667 0.27883 0.00012561 450.51273333188533 65.975 0.75426 65.975 65.692 66.446 0 85 21 5 0 0 0 0.57462 1 12718 12718 3.0723 0 1 48777000 + 36155 15929 24317 24333 35620 35620 -0.14490241944895388 QLEIHHQG 8 Unmodified _QLEIHHQG_ 0 0 0 REV__nc|ENSG00000173662|Q7RTX1-4|TAS1R1 REV__nc|ENSG00000173662|Q7RTX1-4|TAS1R1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24603271484375 2 481.246141 960.477728 -0.071138 -3.4235E-05 0.27062 0.00013024 0.19948 9.6E-05 481.2463089811695 17.608 0.25068 17.608 17.48 17.731 0 11 6 2 0 0 0 8448 1 2791 2791 10.074 0 1 1451600 + 36156 18367 24318 24334 35621 35621 -0.0040915404786119325 QLEPERKLD 9 Unmodified _QLEPERKLD_ 0 0 0 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1181945800781 3 376.540022 1126.59824 -0.011601 -4.3684E-06 -0.22937 -8.6366E-05 -0.24097 -9.0734E-05 376.53992018062 46.026 1.2789 43.161 42.588 43.867 -2.8653 107 36 4 0 0 0 0.72996 1 8477 8477 4.897 1.5774 1 9700300 + 36157 24010 24319 24335 35622 35622 0.04000209155083212 QLEPERKLD 9 Unmodified _QLEPERKLD_ 0 0 0 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 376.540022 1126.59824 0.083845 3.1571E-05 -0.37578 -0.0001415 -0.29194 -0.00010993 376.53988766698615 43.01 1.1838 43.01 42.456 43.64 0 -0.10684 -0.00022344 NaN 4.897 89 33 3 NaN NaN NaN NaN 0 NaN NaN 0 8024100 + 36158 24010 24319 24335 0.04000209155083212 QLEPERKLD 9 Unmodified _QLEPERKLD_ 0 0 0 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 376.540022 1126.59824 -0.25131 -9.4629E-05 0.036668 1.3807E-05 -0.21464 -8.0822E-05 376.5400144211407 46.021 1.3591 43.18 42.475 43.834 -2.8409 0.062661 0.00024246 NaN 4.897 125 38 4 NaN NaN NaN NaN 0 NaN NaN 0 11045000 + 36159 24010 24319 24335 0.04000209155083212 QLEPERKLD 9 Unmodified _QLEPERKLD_ 0 0 0 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 REV__nc|ENSG00000115504|Q8NDI1|EHBP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 376.540022 1126.59824 -0.011601 -4.3684E-06 -0.22937 -8.6366E-05 -0.24097 -9.0734E-05 376.53992018062 46.026 1.2789 43.161 42.588 43.867 -2.8653 0.044179 -5.8054E-05 NaN 4.897 107 36 4 NaN NaN NaN NaN 0 NaN NaN 0 9700300 + 36160 24010 24319 24335 0.04000209155083212 QLEQDVLSY 9 Unmodified _QLEQDVLSY_ 0 0 0 ENST00000483412.5_1_9:123170580-123298708:-|nuORF;CDK5RAP2|p.L1409*|1|0.2|ENSG00000136861|chr9:120415111-120415111|A/-|frameshift_variant;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;CDK5RAP2|p.N746Kfs*10|1|0.2|ENSG00000136861|chr9:120458587-120458588|-/T|frameshift_variant;CDK5RAP2|p.P1012Lfs*62|1|0.27|ENSG00000136861|chr9:120443733-120443733|G/-|frameshift_variant ENST00000483412.5_1_9:123170580-123298708:-|nuORF ENST00000483412.5_1_9:123170580-123298708:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7723388671875 2 547.771854 1093.52915 0.36856 0.00020189 1.0371 0.00056808 1.4056 0.00076997 547.7716389667474 116.96 0.56734 112.37 112.04 112.61 -4.5815 31 15 4 0 0 0 0.10573 2 22440 22400;22440 53.833 12.321 1 1835900 36161 471 24320 24336 35623;35624 35624 -0.01386874864465426 QLEQDVLSY 9 Unmodified _QLEQDVLSY_ 0 0 0 ENST00000483412.5_1_9:123170580-123298708:-|nuORF;CDK5RAP2|p.L1409*|1|0.2|ENSG00000136861|chr9:120415111-120415111|A/-|frameshift_variant;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;CDK5RAP2|p.N746Kfs*10|1|0.2|ENSG00000136861|chr9:120458587-120458588|-/T|frameshift_variant;CDK5RAP2|p.P1012Lfs*62|1|0.27|ENSG00000136861|chr9:120443733-120443733|G/-|frameshift_variant ENST00000483412.5_1_9:123170580-123298708:-|nuORF ENST00000483412.5_1_9:123170580-123298708:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 547.771854 1093.52915 0.55388 0.0003034 -0.40233 -0.00022039 0.15155 8.3015E-05 547.7716134013002 116.59 0.45532 112.24 112.02 112.48 -4.3585 -0.068816 -0.00021181 NaN 53.833 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1101500 36162 471 24320 24336 -0.01386874864465426 QLESERPP 8 Unmodified _QLESERPP_ 0 0 0 ENST00000178638.7_1_15:63638904-63674097:-|nuORF;ENST00000422263.2_1_15:63637727-63674013:-|nuORF ENST00000178638.7_1_15:63638904-63674097:-|nuORF ENST00000178638.7_1_15:63638904-63674097:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72271728515625 2 478.245806 954.47706 0.20933 0.00010011 -0.65859 -0.00031497 -0.44925 -0.00021485 478.2454870078147 48.609 0.38822 48.609 48.418 48.806 0 17 10 2 0 0 0 0.72428 1 9151 9151 10.824 0 1 938790 36163 8082 24321 24337 35625 35625 -0.0019999348756982727 QLESTYRKG 9 Unmodified _QLESTYRKG_ 0 0 0 nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.277099609375 2 541.285463 1080.55637 0.072002 3.8974E-05 0.026536 1.4364E-05 0.098538 5.3337E-05 541.2854630113176 17.938 0.42743 16.627 16.404 16.831 -1.3109 31 11 4 0 0 0 0.60489 1 2866 2866 2.4985 0 1 10297000 36164 4200 24322 24338 35626 35626 0.019316534665676954 QLEYLIHYYNK 11 Unmodified _QLEYLIHYYNK_ 0 0 0 REV__ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant REV__ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3812255859375 2 742.382634 1482.75072 NaN NaN NaN NaN NaN NaN NaN 175.26 1 170.37 169.87 170.87 -4.8916 0 0 0 0.22632 1 34932 34932 0.172 0.17144 1 + 36165 14280 24323 24339 35627 35627 0.02864984831876427 QLFKRVLLKIR 11 Unmodified _QLFKRVLLKIR_ 0 0 0 REV__ENSG00000181523|ENST00000326317|SGSH;REV__ENST00000575282.5_1_17:78187814-78194112:-|nuORF REV__ENSG00000181523|ENST00000326317|SGSH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 707.5208740234375 2 707.474463 1412.93437 NaN NaN NaN NaN NaN NaN NaN 167.82 1 167.82 167.32 168.32 0 0 0 0 0.23698 1 34320 34320 1.1933 0 1 + 36166 18733;23201 24324 24340 35628 35628 0.24442423124014567 QLFQILVQY 9 Unmodified _QLFQILVQY_ 0 0 0 REV__ENSG00000152104|ENST00000366956|PTPN14 REV__ENSG00000152104|ENST00000366956|PTPN14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3272094726562 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 146.17 1 146.17 145.67 146.67 0 0 0 0 0.19652 1 29224 29224 0.073264 0 1 + 36167 17094 24325 24341 35629 35629 0.06935175545504535 QLFRLRHLQLG 11 Unmodified _QLFRLRHLQLG_ 0 0 0 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5396728515625 3 460.945606 1379.81499 0.28115 0.0001296 -0.46154 -0.00021274 -0.18039 -8.3148E-05 461.2797917153108 109.86 0.1689 109.86 109.78 109.95 0 5 4 2 0 0 0 0.96173 1 21595 21595 2.2527 1.0379 1 790080 36168 4415 24326 24342 35630 35630 0.14027229499311034 QLFSTERY 8 Unmodified _QLFSTERY_ 0 0 0 REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2616577148438 2 522.261456 1042.50836 -0.2771 -0.00014472 0.38864 0.00020297 0.11154 5.8253E-05 522.2616270175325 59.112 0.42505 56.201 55.893 56.318 -2.9105 20 11 2 0 0 0 0.58432 1 11323 11323 23.148 0.41214 1 1470300 + 36169 20440 24327 24343 35631 35631 -0.011194204534604069 QLFSTERY 8 Unmodified _QLFSTERY_ 0 0 0 REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2608032226562 2 522.261456 1042.50836 -0.62837 -0.00032817 0.70656 0.00036901 0.078188 4.0835E-05 522.2617429565975 59.362 0.39312 56.048 55.816 56.209 -3.3139 18 10 2 0 0 0 0.58432 1 11027 11027 23.148 1.4018 1 1397100 + 36170 20440 24327 24343 35632 35632 -0.011194204534604069 QLFSTERY 8 Unmodified _QLFSTERY_ 0 0 0 REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2792358398438 2 522.261456 1042.50836 0.16719 8.7317E-05 -0.015294 -7.9875E-06 0.1519 7.933E-05 522.2614050256642 59.253 0.55571 56.048 55.787 56.343 -3.2052 31 15 3 0 0 0 0.71876 1 11040 11040 11.64 0.81637 1 1194400 + 36171 20440 24327 24343 35633 35633 -0.011194204534604069 QLFYWRLFRKL 11 Unmodified _QLFYWRLFRKL_ 0 0 0 ENST00000502508.5_1_5:33441192-33446243:+|nuORF ENST00000502508.5_1_5:33441192-33446243:+|nuORF ENST00000502508.5_1_5:33441192-33446243:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.679443359375 3 523.973273 1568.89799 -0.42756 -0.00022403 -2.9238 -0.001532 -3.3513 -0.001756 523.9713142224466 145.76 0.13861 140.65 140.55 140.69 -5.1108 6 3 2 0 0 0 0.96219 1 28161 28161 0.36667 0.29341 1 1027300 36172 10628 24328 24344 35634 35634 0.13629546227275569 QLGRRLCQLWI 11 Unmodified _QLGRRLCQLWI_ 0 0 0 ENSG00000157219|ENST00000287907|HTR5A ENSG00000157219|ENST00000287907|HTR5A ENSG00000157219|ENST00000287907|HTR5A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 693.062744140625 2 693.395356 1384.77616 0.73601 0.00051035 0.28868 0.00020017 1.0247 0.00071052 693.3964947320856 169.91 0.17026 165.04 164.92 165.09 -4.873 5 4 2 0 0 0 0.93546 1 33572 33572 12.241 8.0512 1 6489400 36173 5123 24329 24345 35635 35635 0.0991618087327879 QLHEDEEF 8 Unmodified _QLHEDEEF_ 0 0 0 RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6788330078125 2 523.724904 1045.43525 NaN NaN NaN NaN NaN NaN NaN 84.283 1 80.571 80.071 81.071 -3.7117 0 0 0 0.19342 1 16096 16096 26.884 12.978 1 36174 1169 24330 24346 35636 35636 -0.08564593966752909 QLHEKEVY 8 Unmodified _QLHEKEVY_ 0 0 0 REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141 REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6929321289062 2 523.269281 1044.52401 -0.20194 -0.00010567 -3.3738 -0.0017654 -3.5757 -0.0018711 523.2678368862339 83.52 1.3566 79.912 79.582 80.939 -3.6079 69 38 5 0 0 0 0.74718 1 16441 16441 24.674 7.7316 1 3286800 + 36175 17577 24331 24347 35637 35637 0.0035286606357658457 QLHKCAFD 8 Unmodified _QLHKCAFD_ 0 0 0 ENST00000411556.2_1_9:44472681-44473188:+|nuORF ENST00000411556.2_1_9:44472681-44473188:+|nuORF ENST00000411556.2_1_9:44472681-44473188:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2313537597656 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 5.9757 1 4.9669 4.4669 5.4669 -1.0089 0 0 0 0.21486 1 335 335 0.69038 0 1 36176 9576 24332 24348 35638 35638 -0.03307014668519059 QLHWFAKFFPY 11 Unmodified _QLHWFAKFFPY_ 0 0 0 ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3786010742188 2 742.379697 1482.74484 NaN NaN NaN NaN NaN NaN NaN 129.76 1 124.93 124.43 125.43 -4.8355 0 0 0 0.22632 1 24913 24913 0.50596 0 1 36177 7335 24333 24349 35639 35639 0.02277931110825193 QLIFLYFWWRR 11 Unmodified _QLIFLYFWWRR_ 0 0 0 ENST00000471075.1_1_3:171371881-171395443:-|nuORF ENST00000471075.1_1_3:171371881-171395443:-|nuORF ENST00000471075.1_1_3:171371881-171395443:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7789916992188 3 543.301389 1626.88234 NaN NaN NaN NaN NaN NaN NaN 99.463 1 95.194 94.694 95.694 -4.2692 0 0 0 0.22632 1 19013 19013 0.026206 0 1 36178 10206 24334 24350 35640 35640 0.09397259710226535 QLIHDEKRL 9 Unmodified _QLIHDEKRL_ 0 0 0 AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant;AHNAK2|p.D4448Gfs*6|1|0.2|ENSG00000185567|chr14:104942108-104942109|-/C|frameshift_variant;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant;AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.D983Tfs*9|1|0.16|ENSG00000185567|chr14:104952504-104952504|C/-|frameshift_variant;AHNAK2|p.D1643Tfs*9|1|0.12|ENSG00000185567|chr14:104950524-104950524|C/-|frameshift_variant;AHNAK2|p.P2536Lfs*14|1|0.11|ENSG00000185567|chr14:104947844-104947844|G/-|frameshift_variant AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3302612304688 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 113.89 1 113.89 113.39 114.39 0 0 0 0 0.19657 1 22398 22398 4.897 3.4896 1 36179 104 24335 24351 35641 35641 0.07655908145943613 QLIRDMVNV 9 Unmodified _QLIRDMVNV_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7962646484375 2 544.300059 1086.58556 0.41329 0.00022496 0.478 0.00026017 0.89129 0.00048513 544.3003018966018 117.81 0.45665 113.31 113.1 113.56 -4.502 20 12 2 0 0 0 0.67852 1 23260 23260 18.373 0.22675 1 1796800 36180 2140 24336 24352 35642 35642 0.045734744911896996 QLISGGPLTA 10 Unmodified _QLISGGPLTA_ 0 0 0 REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1 REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7210998535156 2 478.7742 955.533846 0.045637 2.185E-05 0.74097 0.00035476 0.78661 0.00037661 478.77421332202215 79.759 1.3039 76.248 75.206 76.51 -3.5102 66 36 3 0 0 0 0.26842 1 15558 15558 57.722 0 1 5690100 + 36181 15129 24337 24353 35643 35643 0.0543005406894963 QLISGGPLTA 10 Unmodified _QLISGGPLTA_ 0 0 0 REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1 REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7237854003906 2 478.7742 955.533846 -0.050274 -2.407E-05 -0.028057 -1.3433E-05 -0.078331 -3.7503E-05 478.7741570906369 80.035 0.84132 76.231 75.79 76.631 -3.8048 51 23 3 0 0 0 0.17837 1 15213 15213 66.457 8.7347 1 4648500 + 36182 15129 24337 24353 35644 35644 0.0543005406894963 QLIVPVLF 8 Unmodified _QLIVPVLF_ 0 0 0 RNF145|p.V226I|1|0.3|ENSG00000145860|chr5:159174104-159174104|C/T|missense_variant RNF145|p.V226I|1|0.3|ENSG00000145860|chr5:159174104-159174104|C/T|missense_variant RNF145|p.V226I|1|0.3|ENSG00000145860|chr5:159174104-159174104|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17138671875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 13.943 1 13.943 13.443 14.443 0 0 0 0 0.21486 1 2047 2047 0.40072 0 1 36183 25614 24338 24354 35645 35645 0.1126532432199383 QLIWRRRREE 10 Unmodified _QLIWRRRREE_ 0 0 0 REV__ENST00000297578.8_1_8:104412732-104413749:-|nuORF REV__ENST00000297578.8_1_8:104412732-104413749:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7859802246094 3 481.276014 1440.80621 -0.60663 -0.00029196 -0.033718 -1.6228E-05 -0.64035 -0.00030818 481.27580192755136 14.475 0.179 13.302 13.21 13.389 -1.173 5 4 2 0 0 0 0.76775 1 1968 1968 0.15932 0 1 136670 + 36184 20381 24339 24355 35646 35646 0.10344255862810314 QLKLAFLKKI 10 Unmodified _QLKLAFLKKI_ 0 0 0 REV__ENST00000313478.11_1_15:50884110-50884182:-|nuORF REV__ENST00000313478.11_1_15:50884110-50884182:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 401.3045654296875 3 401.272548 1200.79581 NaN NaN NaN NaN NaN NaN NaN 100.14 1 95.981 95.481 96.481 -4.1594 0 0 0 0.22588 1 19677 19677 0.62683 0.35781 1 + 36185 20503 24340 24356 35647 35647 0.20344880155698775 QLKLVVKK 8 Unmodified _QLKLVVKK_ 0 0 0 nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF nc|ENSG00000149600|Q86VX2-2|COMMD7 nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7294616699219 2 478.33677 954.658987 NaN NaN NaN NaN NaN NaN NaN 119.76 1 115.11 114.61 115.61 -4.645 0 0 0 0.2396 1 22985 22985 0.0082765 0 1 36186 4803 24341 24357 35648 35648 0.17984390995979993 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;PLCG1|p.L868*|1|0.36|ENSG00000124181|chr20:41169474-41169474|C/-|frameshift_variant nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 426.291259765625 3 426.290713 1275.85031 NaN NaN NaN NaN NaN NaN NaN 20.875 1 19.154 18.654 19.654 -1.7211 0 0 0 0.22588 1 3236 3236 0.15932 0 1 36187 3296 24342 24358 35649 35649 0.22341892027111498 QLKTRKLRRRE 11 Unmodified _QLKTRKLRRRE_ 0 0 0 ENST00000476910.6_1_X:101855867-101856403:+|nuORF;ENST00000604957.1_2_X:101855873-101855999:+|nuORF ENST00000476910.6_1_X:101855867-101856403:+|nuORF ENST00000476910.6_1_X:101855867-101856403:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.388671875 2 742.468232 1482.92191 NaN NaN NaN NaN NaN NaN NaN 167.64 1 167.64 167.14 168.14 0 0 0 0 0.23698 1 34270 34270 1.3295 0 1 36188 10298 24343 24359 35650 35650 0.19976779713624637 QLKWRRPRLKQ 11 Unmodified _QLKWRRPRLKQ_ 0 0 0 REV__PRAMEF17|p.T389Afs*9|1|0.05|ENSG00000204479|chr1:13392241-13392242|-/GCTTGGGT|frameshift_variant REV__PRAMEF17|p.T389Afs*9|1|0.05|ENSG00000204479|chr1:13392241-13392242|-/GCTTGGGT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 754.950927734375 2 754.967868 1507.92118 NaN NaN NaN NaN NaN NaN NaN 173.32 1 173.32 172.82 173.82 0 0 0 0 0.23698 1 35834 35834 0.30703 0 1 + 36189 24503 24344 24360 35651 35651 0.18753985064631706 QLKWWRWSWWW 11 Unmodified _QLKWWRWSWWW_ 0 0 0 REV__chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21539306640625 4 437.721573 1746.85719 -1.7566 -0.00076892 1.0386 0.00045462 -0.71802 -0.00031429 437.9726109954705 15.621 0.17603 14.267 14.131 14.307 -1.3534 6 4 2 0 0 0 0.96225 1 2149 2149 0.40827 0.40827 1 313570 + 36190 13412 24345 24361 35652 35652 0.013632049076704789 QLKWWRWSWWW 11 Unmodified _QLKWWRWSWWW_ 0 0 0 REV__chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 437.721573 1746.85719 0.051826 2.2685E-05 -0.78338 -0.0003429 -0.73155 -0.00032022 437.97208874949246 14.354 0.10699 14.354 14.279 14.386 0 0.05086 -0.0010588 NaN 0.40827 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 219200 + 36191 13412 24345 24361 0.013632049076704789 QLKWWRWSWWW 11 Unmodified _QLKWWRWSWWW_ 0 0 0 REV__chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 437.721573 1746.85719 -0.69145 -0.00030266 -0.37494 -0.00016412 -1.0664 -0.00046678 437.721733337701 15.503 0.17344 14.287 14.204 14.378 -1.2159 -0.015263 -0.00034366 NaN 0.40827 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 331150 + 36192 13412 24345 24361 0.013632049076704789 QLLEGEAETSC 11 Unmodified _QLLEGEAETSC_ 0 0 0 REV__ENST00000506360.5_1_4:8220037-8234255:+|nuORF REV__ENST00000506360.5_1_4:8220037-8234255:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2647705078125 2 590.263536 1178.51252 NaN NaN NaN NaN NaN NaN NaN 55.082 1 52.199 51.699 52.699 -2.8837 0 0 0 0.13908 1 10531 10531 29.841 6.0508 1 + 36193 15801 24346 24362 35653 35653 -0.06959743812717534 QLLEKVIEL 9 Unmodified _QLLEKVIEL_ 0 0 0 nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1 nc|ENSG00000093144|Q9NTX5-4|ECHDC1 nc|ENSG00000093144|Q9NTX5-4|ECHDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7816162109375 2 542.834257 1083.65396 0.40506 0.00021988 -0.12371 -6.7151E-05 0.28136 0.00015273 542.8341704384934 160.2 0.88162 155.4 154.94 155.82 -4.7952 73 24 4 0 0 0 0.033473 3 31842 31835;31838;31842 97.138 72.256 1 32206000 36194 910 24347 24363 35654;35655;35656 35656 0.11548042342701592 QLLEKVIEL 9 Unmodified _QLLEKVIEL_ 0 0 0 nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1 nc|ENSG00000093144|Q9NTX5-4|ECHDC1 nc|ENSG00000093144|Q9NTX5-4|ECHDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7848510742188 2 542.834257 1083.65396 0.20208 0.0001097 0.064217 3.4859E-05 0.2663 0.00014456 542.8342390397014 160.91 0.84943 155.68 155.19 156.04 -5.2299 62 23 3 0 0 0 0.037776 1 31201 31201 86.332 34.917 1 22086000 36195 910 24347 24363 35657 35657 0.11548042342701592 QLLEKVIEL 9 Unmodified _QLLEKVIEL_ 0 0 0 nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1 nc|ENSG00000093144|Q9NTX5-4|ECHDC1 nc|ENSG00000093144|Q9NTX5-4|ECHDC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.834257 1083.65396 0.34306 0.00018623 0.0091413 4.9622E-06 0.3522 0.00019119 542.8342146938395 155.69 0.75853 155.69 155.35 156.11 0 0.086279 9.2162E-05 NaN 78.728 54 21 3 NaN NaN NaN NaN 0 NaN NaN 0 25735000 36196 910 24347 24363 0.11548042342701592 QLLEKVIEL 9 Unmodified _QLLEKVIEL_ 0 0 0 nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1 nc|ENSG00000093144|Q9NTX5-4|ECHDC1 nc|ENSG00000093144|Q9NTX5-4|ECHDC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.834257 1083.65396 0.53684 0.00029142 -0.30887 -0.00016766 0.22797 0.00012375 542.8340242169623 160.89 0.91576 155.64 155.21 156.12 -5.2527 0.038254 -0.00025309 NaN 78.728 75 25 4 NaN NaN NaN NaN 0 NaN NaN 0 27559000 36197 910 24347 24363 0.11548042342701592 QLLEQTPLGP 10 Unmodified _QLLEQTPLGP_ 0 0 0 REV__ENSG00000249115|ENST00000203166|HAUS5 REV__ENSG00000249115|ENST00000203166|HAUS5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7742919921875 2 548.305864 1094.59717 0.018536 1.0163E-05 -0.097608 -5.3519E-05 -0.079072 -4.3356E-05 548.3056646419006 41.849 0.51775 39.214 38.947 39.465 -2.6348 33 14 3 0 0 0 0.87854 1 7841 7841 5.7319 0.43497 1 3815900 + 36198 19819 24348 24364 35658 35658 0.05365994786188821 QLLFLVPPLY 10 Unmodified _QLLFLVPPLY_ 0 0 0 REV__ENST00000495880.1_1_3:52083316-52083664:-|nuORF REV__ENST00000495880.1_1_3:52083316-52083664:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3019409179688 2 601.862818 1201.71108 NaN NaN NaN NaN NaN NaN NaN 96.771 1 92.852 92.352 93.352 -3.9194 0 0 0 0.22588 1 18572 18572 3.9444 0 1 + 36199 22385 24349 24365 35659 35659 0.1182950961908773 QLLIEMTYA 9 Unmodified _QLLIEMTYA_ 0 0 0 REV__ZNF521|p.T899I|1|0.35|ENSG00000198795|chr18:25225222-25225222|G/A|missense_variant REV__ZNF521|p.T899I|1|0.35|ENSG00000198795|chr18:25225222-25225222|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2833862304688 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 58.304 1 58.304 57.804 58.804 0 0 0 0 0.21469 1 11154 11154 19.257 4.4187 1 + 36200 25580 24350 24366 35660 35660 0.015478476484986459 QLLKLPLLPLL 11 Unmodified _QLLKLPLLPLL_ 0 0 0 REV__STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant REV__STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7706298828125 2 630.936317 1259.85808 NaN NaN NaN NaN NaN NaN NaN 160.49 1 160.49 159.99 160.99 0 0 0 0 0.22632 1 32228 32228 0 0 1 + 36201 19797 24351 24367 35661 35661 0.23854606504050935 QLLKLPLLPLL 11 Unmodified _QLLKLPLLPLL_ 0 0 0 REV__STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant REV__STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.767333984375 2 630.936317 1259.85808 NaN NaN NaN NaN NaN NaN NaN 129.52 1 124.78 124.28 125.28 -4.7408 0 0 0 0.22632 1 24924 24924 0 0 1 + 36202 19797 24351 24367 35662 35662 0.23854606504050935 QLLKRQILILV 11 Unmodified _QLLKRQILILV_ 0 0 0 REV__ENST00000475134.1_1_3:99998514-100014027:+|nuORF REV__ENST00000475134.1_1_3:99998514-100014027:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 668.9705200195312 2 668.955572 1335.89659 NaN NaN NaN NaN NaN NaN NaN 176.84 1 176.84 176.34 177.34 0 0 0 0 0.22632 1 36635 36635 0.094841 0 1 + 36203 22092 24352 24368 35663 35663 0.2420791213855864 QLLLHLSQLHA 11 Unmodified _QLLLHLSQLHA_ 0 0 0 REV__nc|ENSG00000075340|P35612-3|ADD2 REV__nc|ENSG00000075340|P35612-3|ADD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.23583984375 3 424.918945 1271.73501 -0.14134 -6.0056E-05 0.43089 0.00018309 0.28956 0.00012304 424.91903243705497 81.498 0.79431 77.941 77.442 78.236 -3.557 44 22 3 0 0 0 0.76929 1 15878 15878 7.0371 2.3212 1 2073200 + 36204 23951 24353 24369 35664 35664 0.1100074310547825 QLLLLLLLLLL 11 Unmodified _QLLLLLLLLLL_ 0 0 0 REV__nc|ENSG00000157193|Q14114-4|LRP8;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B REV__nc|ENSG00000157193|Q14114-4|LRP8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 639.488525390625 2 639.462167 1276.90978 NaN NaN NaN NaN NaN NaN NaN 170.29 1 165.41 164.91 165.91 -4.873 0 0 0 0.22632 1 33690 33690 0 0 1 + 36205 17287;18932 24354 24370 35665 35665 0.28240350197938824 QLLLLVPLRS 10 Unmodified _QLLLLVPLRS_ 0 0 0 REV__ENSG00000164399|ENST00000296870|IL3 REV__ENSG00000164399|ENST00000296870|IL3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3323974609375 2 576.379166 1150.74378 NaN NaN NaN NaN NaN NaN NaN 161.32 1 156.53 156.03 157.03 -4.7952 0 0 0 0.22588 1 32082 32082 2.9952 1.5133 1 + 36206 17679 24355 24371 35666 35666 0.174437167419228 QLLQDDEVDE 10 Unmodified _QLLQDDEVDE_ 0 0 0 REV__nc|ENSG00000123485|Q8NCD3-3|HJURP REV__nc|ENSG00000123485|Q8NCD3-3|HJURP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2922973632812 2 602.272415 1202.53028 NaN NaN NaN NaN NaN NaN NaN 166.24 1 161.45 160.95 161.95 -4.7898 0 0 0 0.22588 1 33373 33373 9.3831 0.63772 1 + 36207 15733 24356 24372 35667 35667 -0.0628870528621519 QLLQLRVIRLQ 11 Unmodified _QLLQLRVIRLQ_ 0 0 0 REV__ENST00000358744.3_1_19:38077586-38085658:-|nuORF REV__ENST00000358744.3_1_19:38077586-38085658:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 690.3001098632812 2 690.445903 1378.87725 NaN NaN NaN NaN NaN NaN NaN 166.31 1 166.31 165.81 166.81 0 0 0 0 0.22632 1 33865 33865 0.00056442 0 1 + 36208 20843 24357 24373 35668 35668 0.20296955847652498 QLLRKLGRLF 10 Unmodified _QLLRKLGRLF_ 0 0 0 REV__BARD1|p.D172Mfs*40|2|0.14|ENSG00000138376|chr2:214781361-214781361|T/-|frameshift_variant REV__BARD1|p.D172Mfs*40|2|0.14|ENSG00000138376|chr2:214781361-214781361|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7586669921875 2 622.403507 1242.79246 NaN NaN NaN NaN NaN NaN NaN 119.94 1 115.47 114.97 115.97 -4.467 0 0 0 2.8426 1 23088 23088 0.043787 0 1 + 36209 13178 24358 24374 35669 35669 0.1807763010169765 QLLRRLTRKRV 11 Unmodified _QLLRRLTRKRV_ 0 0 0 REV__ENSG00000146648|ENST00000275493|EGFR REV__ENSG00000146648|ENST00000275493|EGFR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 719.98779296875 2 719.975693 1437.93683 NaN NaN NaN NaN NaN NaN NaN 166.03 1 161.05 160.55 161.55 -4.9811 0 0 0 0.23698 1 32504 32504 1.3295 0.13619 1 + 36210 16895 24359 24375 35670 35670 0.23538271581651316 QLLTSKAPVW 10 Unmodified _QLLTSKAPVW_ 0 0 0 REV__ENST00000427137.1_1_7:46039264-46039813:-|nuORF REV__ENST00000427137.1_1_7:46039264-46039813:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 572.3141479492188 2 571.832049 1141.64954 0.50028 0.00028607 -0.24383 -0.00013943 0.25645 0.00014664 571.8317832761745 165.33 0.33998 160.38 160.22 160.56 -4.9484 24 9 3 0 0 0 0.71097 1 32327 32327 10.074 1.9184 1 52507000 + 36211 21576 24360 24376 35671 35671 0.08438577919810086 QLLTSKAPVW 10 Unmodified _QLLTSKAPVW_ 0 0 0 REV__ENST00000427137.1_1_7:46039264-46039813:-|nuORF REV__ENST00000427137.1_1_7:46039264-46039813:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 571.832049 1141.64954 0.21787 0.00012459 0.82747 0.00047317 1.0453 0.00059776 572.3339772376762 165.35 0.38092 160.37 160.25 160.63 -4.9811 0.00022159 0.0006434 NaN 10.074 27 10 4 NaN NaN NaN NaN 0 NaN NaN 0 35817000 + 36212 21576 24360 24376 0.08438577919810086 QLLTSKAPVW 10 Unmodified _QLLTSKAPVW_ 0 0 0 REV__ENST00000427137.1_1_7:46039264-46039813:-|nuORF REV__ENST00000427137.1_1_7:46039264-46039813:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 571.832049 1141.64954 0.50028 0.00028607 -0.24383 -0.00013943 0.25645 0.00014664 571.8317832761745 165.33 0.33998 160.38 160.22 160.56 -4.9484 0.010914 -0.0005818 NaN 10.074 24 9 3 NaN NaN NaN NaN 0 NaN NaN 0 52507000 + 36213 21576 24360 24376 0.08438577919810086 QLMHAHFY 8 Unmodified _QLMHAHFY_ 0 0 0 ENST00000533538.5_1_17:45664518-45669919:+|nuORF;ENST00000525021.1_1_17:45664518-45669341:+|nuORF ENST00000533538.5_1_17:45664518-45669919:+|nuORF ENST00000533538.5_1_17:45664518-45669919:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6880493164062 2 523.747462 1045.48037 NaN NaN NaN NaN NaN NaN NaN 35.315 1 35.315 34.815 35.815 0 0 0 0 0.21486 1 6479 6479 10.183 0.10947 1 36214 10996 24361 24377 35672 35672 -0.040550219145643496 QLNDLKAQL 9 Unmodified _QLNDLKAQL_ 0 0 0 REV__ENSG00000167768|ENST00000252244|KRT1 REV__ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2710571289062 2 521.798206 1041.58186 -0.12725 -6.64E-05 0.5781 0.00030165 0.45085 0.00023525 521.7984459428383 67.967 0.59804 67.967 67.583 68.181 0 43 16 3 0 0 0 0.48437 1 13081 13081 27.629 1.3607 1 11891000 + + 36215 13522 24362 24378 35673 35673 0.06273127989015848 QLNEELVL 8 Unmodified _QLNEELVL_ 0 0 0 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000159899|ENST00000342694|NPR2 nc|ENSG00000159899|P20594-2|NPR2 nc|ENSG00000159899|P20594-2|NPR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72998046875 2 479.266207 956.517862 0.19455 9.3241E-05 0.084896 4.0688E-05 0.27945 0.00013393 479.2661176276333 134.48 0.88057 129.66 129.09 129.97 -4.8175 38 24 2 0 0 0 0.86749 1 25808 25808 10.824 3.5347 1 2133800 36216 5223 24363 24379 35674 35674 0.03786347832055981 QLNEKVAQL 9 Unmodified _QLNEKVAQL_ 0 0 0 ENST00000419457.1_1_13:29296686-29297403:-|nuORF;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1 ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENST00000419457.1_1_13:29296686-29297403:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2613525390625 2 521.798206 1041.58186 -0.38641 -0.00020163 0.54404 0.00028388 0.15764 8.2254E-05 521.7984406767703 71.335 0.77309 67.755 67.367 68.14 -3.5798 56 21 4 0 0 0 0.0067515 2 13486 13486;13497 133.05 18.851 1 12946000 36217 772 24364 24380 35675;35676 35675 0.0627312798899311 QLNEKVAQL 9 Unmodified _QLNEKVAQL_ 0 0 0 ENST00000419457.1_1_13:29296686-29297403:-|nuORF;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1 ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENST00000419457.1_1_13:29296686-29297403:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.273681640625 2 521.798206 1041.58186 0.40574 0.00021171 -0.13485 -7.0363E-05 0.27089 0.00014135 521.7980766573806 71.321 0.70171 67.854 67.486 68.187 -3.467 55 19 4 0 0 0 4.4717E-06 1 13512 13512 47.987 17.284 1 14229000 36218 772 24364 24380 35677 35677 0.0627312798899311 QLNEKVAQL 9 Unmodified _QLNEKVAQL_ 0 0 0 ENST00000419457.1_1_13:29296686-29297403:-|nuORF;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1 ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENST00000419457.1_1_13:29296686-29297403:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.798206 1041.58186 -0.12725 -6.64E-05 0.5781 0.00030165 0.45085 0.00023525 521.7984459428383 67.967 0.59804 67.967 67.583 68.181 0 0.1418 0.00018924 NaN 47.987 43 16 3 NaN NaN NaN NaN 0 NaN NaN 0 11891000 36219 772 24364 24380 0.0627312798899311 QLNEKVAQL 9 Unmodified _QLNEKVAQL_ 0 0 0 ENST00000419457.1_1_13:29296686-29297403:-|nuORF;CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1 ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENST00000419457.1_1_13:29296686-29297403:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.798206 1041.58186 -0.35018 -0.00018272 0.61429 0.00032054 0.26412 0.00013782 521.7984994023349 70.973 0.67416 67.724 67.354 68.028 -3.2492 -0.10076 0.00022702 NaN 47.987 53 18 4 NaN NaN NaN NaN 0 NaN NaN 0 15633000 36220 772 24364 24380 0.0627312798899311 QLPLTPVNEL 10 Unmodified _QLPLTPVNEL_ 0 0 0 REV__ENST00000465727.5_1_1:1153052-1158671:-|nuORF REV__ENST00000465727.5_1_1:1153052-1158671:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2159729003906 3 375.216768 1122.62847 NaN NaN NaN NaN NaN NaN NaN 83.9 1 83.9 83.4 84.4 0 0 0 0 0.22588 1 16358 16358 3.0723 0 1 + 36221 21955 24365 24381 35678 35678 0.07206567820276177 QLPPELLL 8 Unmodified _QLPPELLL_ 0 0 0 ENSG00000161243|ENST00000292853|FBXO27 ENSG00000161243|ENST00000292853|FBXO27 ENSG00000161243|ENST00000292853|FBXO27 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5240173339844 2 461.784036 921.553519 0.1637 7.5593E-05 1.5101 0.00069733 1.6738 0.00077292 461.7846975550895 129.43 0.81412 124.69 124.29 125.11 -4.7408 32 22 2 0 0 0 0.73936 1 24910 24910 8.5933 0 1 1190200 36222 5287 24366 24382 35679 35679 0.08960430079730486 QLPPELLL 8 Unmodified _QLPPELLL_ 0 0 0 ENSG00000161243|ENST00000292853|FBXO27 ENSG00000161243|ENST00000292853|FBXO27 ENSG00000161243|ENST00000292853|FBXO27 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.784036 921.553519 -0.04953 -2.2872E-05 2.0438 0.0009438 1.9943 0.00092093 461.7848645959558 129.24 0.82721 124.62 124.19 125.01 -4.6292 0.0083376 0.00037025 NaN 8.5933 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1416300 36223 5287 24366 24382 0.08960430079730486 QLPPELLL 8 Unmodified _QLPPELLL_ 0 0 0 ENSG00000161243|ENST00000292853|FBXO27 ENSG00000161243|ENST00000292853|FBXO27 ENSG00000161243|ENST00000292853|FBXO27 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.784036 921.553519 0.03864 1.7843E-05 1.3725 0.00063378 1.4111 0.00065162 461.78476666354646 129.33 0.79341 124.51 124.2 124.99 -4.817 -0.092465 -0.00024981 NaN 8.5933 28 22 2 NaN NaN NaN NaN 0 NaN NaN 0 944460 36224 5287 24366 24382 0.08960430079730486 QLPPELLL 8 Unmodified _QLPPELLL_ 0 0 0 ENSG00000161243|ENST00000292853|FBXO27 ENSG00000161243|ENST00000292853|FBXO27 ENSG00000161243|ENST00000292853|FBXO27 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.784036 921.553519 0.1637 7.5593E-05 1.5101 0.00069733 1.6738 0.00077292 461.7846975550895 129.43 0.81412 124.69 124.29 125.11 -4.7408 0.084127 -0.0001227 NaN 8.5933 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1190200 36225 5287 24366 24382 0.08960430079730486 QLPPRKAILRK 11 Unmodified _QLPPRKAILRK_ 0 0 0 REV__nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 REV__nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 660.5340576171875 2 660.435338 1318.85612 NaN NaN NaN NaN NaN NaN NaN 166.66 1 161.67 161.17 162.17 -4.9811 0 0 0 0.23698 1 32694 32694 1.0715 0.72083 1 + 36226 13105 24367 24383 35680 35680 0.20944990538760067 QLPRRQLY 8 Unmodified _QLPRRQLY_ 0 0 0 ENST00000480825.6_1_1:36933583-36933964:-|nuORF ENST00000480825.6_1_1:36933583-36933964:-|nuORF ENST00000480825.6_1_1:36933583-36933964:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 537.1659545898438 2 537.314358 1072.61416 0.22828 0.00012266 -0.57848 -0.00031082 -0.3502 -0.00018817 537.3140876383475 53.333 1.9166 53.333 51.898 53.814 0 118 53 3 0 0 0 1.0249 1 9879 9879 2.5775 0.27475 1 9294600 36227 10362 24368 24384 35681 35681 0.08075960182668496 QLPRRQLY 8 Unmodified _QLPRRQLY_ 0 0 0 ENST00000480825.6_1_1:36933583-36933964:-|nuORF ENST00000480825.6_1_1:36933583-36933964:-|nuORF ENST00000480825.6_1_1:36933583-36933964:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 537.314358 1072.61416 -0.018508 -9.9444E-06 -0.2094 -0.00011251 -0.22791 -0.00012246 537.3142393615703 56.135 0.71599 53.24 52.898 53.614 -2.8944 0.0037884 0.00024791 NaN 2.5775 56 20 4 NaN NaN NaN NaN 0 NaN NaN 0 16969000 36228 10362 24368 24384 0.08075960182668496 QLPRRQLY 8 Unmodified _QLPRRQLY_ 0 0 0 ENST00000480825.6_1_1:36933583-36933964:-|nuORF ENST00000480825.6_1_1:36933583-36933964:-|nuORF ENST00000480825.6_1_1:36933583-36933964:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 537.314358 1072.61416 0.28482 0.00015304 -0.57695 -0.00031 -0.29214 -0.00015697 537.3140049385028 56.402 1.2993 53.213 52.285 53.584 -3.1895 -0.023697 -0.00014707 NaN 2.5775 77 36 3 NaN NaN NaN NaN 0 NaN NaN 0 16778000 36229 10362 24368 24384 0.08075960182668496 QLPRRQLY 8 Unmodified _QLPRRQLY_ 0 0 0 ENST00000480825.6_1_1:36933583-36933964:-|nuORF ENST00000480825.6_1_1:36933583-36933964:-|nuORF ENST00000480825.6_1_1:36933583-36933964:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 537.314358 1072.61416 0.088529 4.7568E-05 -0.34616 -0.000186 -0.25763 -0.00013843 537.3141378946899 56.336 1.0638 53.16 52.552 53.615 -3.1761 -0.07616 0.00010094 NaN 2.5775 60 29 3 NaN NaN NaN NaN 0 NaN NaN 0 19644000 36230 10362 24368 24384 0.08075960182668496 QLQDFDWQV 9 Unmodified _QLQDFDWQV_ 0 0 0 ENSG00000169019|ENST00000381571|COMMD8 ENSG00000169019|ENST00000381571|COMMD8 ENSG00000169019|ENST00000381571|COMMD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2481079101562 2 589.77747 1177.54039 0.65144 0.00038421 1.3456 0.00079363 1.9971 0.0011778 589.7773746342507 164.05 0.37178 159.26 159.13 159.5 -4.7898 26 10 3 0 0 0 0.006766 1 32762 32762 111.29 67.429 1 29977000 36231 5957 24369 24385 35682 35682 -0.04128052770352042 QLQDFDWQV 9 Unmodified _QLQDFDWQV_ 0 0 0 ENSG00000169019|ENST00000381571|COMMD8 ENSG00000169019|ENST00000381571|COMMD8 ENSG00000169019|ENST00000381571|COMMD8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2527465820312 2 589.77747 1177.54039 0.48851 0.00028811 0.56051 0.00033058 1.049 0.00061869 590.2792822642095 164.21 0.57671 159.15 158.9 159.48 -5.0648 29 16 3 0 0 0 0.034704 1 32049 32049 78.149 42.022 1 14616000 36232 5957 24369 24385 35683 35683 -0.04128052770352042 QLQDTLIHL 9 Unmodified _QLQDTLIHL_ 0 0 0 ENSG00000272886|ENST00000610213|DCP1A;nc|ENSG00000272886|Q9NPI6-2|DCP1A;ENST00000558034.1_1_3:53321600-53322346:-|nuORF ENSG00000272886|ENST00000610213|DCP1A ENSG00000272886|ENST00000610213|DCP1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2781982421875 2 540.806031 1079.59751 0.28316 0.00015313 -0.1797 -9.7183E-05 0.10345 5.5949E-05 540.806021222096 146.29 0.76506 141.6 141.15 141.92 -4.6868 37 21 2 0 0 0 0.60698 1 29007 29007 11.64 4.3511 1 5198300 36233 8007 24370 24386 35684 35684 0.060894145060501614 QLQEELTRYLF 11 Unmodified _QLQEELTRYLF_ 0 0 0 ENSG00000152767|ENST00000319562|FARP1;nc|ENSG00000152767|Q9Y4F1-2|FARP1;ENST00000601853.5_1_13:98996033-99030171:+|nuORF;FARP1|p.P874Lfs*20|1|0.24|ENSG00000152767|chr13:98440222-98440222|C/-|frameshift_variant ENSG00000152767|ENST00000319562|FARP1 ENSG00000152767|ENST00000319562|FARP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2430419921875 3 480.589153 1438.74563 -0.21429 -0.00010298 0.35735 0.00017174 0.14307 6.8757E-05 480.5893309303133 91.925 0.63239 91.925 91.594 92.226 0 48 17 4 0 0 0 0.66087 1 18003 18003 1.4551 1.4492 1 7333100 36234 4940 24371 24387 35685 35685 0.04380680969211426 QLQEELTRYLF 11 Unmodified _QLQEELTRYLF_ 0 0 0 ENSG00000152767|ENST00000319562|FARP1;nc|ENSG00000152767|Q9Y4F1-2|FARP1;ENST00000601853.5_1_13:98996033-99030171:+|nuORF;FARP1|p.P874Lfs*20|1|0.24|ENSG00000152767|chr13:98440222-98440222|C/-|frameshift_variant ENSG00000152767|ENST00000319562|FARP1 ENSG00000152767|ENST00000319562|FARP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2483825683594 3 480.589153 1438.74563 0.14286 6.8656E-05 -0.012733 -6.1195E-06 0.13012 6.2536E-05 480.5890894286405 95.989 0.65644 91.798 91.477 92.133 -4.1912 58 18 4 0 0 0 0.65515 1 18287 18287 3.0723 0 1 9760500 36235 4940 24371 24387 35686 35686 0.04380680969211426 QLQIIHKDE 9 Unmodified _QLQIIHKDE_ 0 0 0 REV__nc|ENSG00000091879|O15123-2|ANGPT2 REV__nc|ENSG00000091879|O15123-2|ANGPT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2081604003906 3 375.208384 1122.60332 -0.79251 -0.00029736 0.75122 0.00028186 -0.041297 -1.5495E-05 375.20856638250314 45.415 0.34857 42.549 42.362 42.711 -2.8666 17 9 2 0 0 0 0.60489 1 8224 8224 2.4985 0 1 671810 + 36236 14577 24372 24388 35687 35687 0.04692513017721467 QLQISNGGY 9 Unmodified _QLQISNGGY_ 0 0 0 REV__ENST00000412976.1_1_10:65929632-65930097:-|nuORF REV__ENST00000412976.1_1_10:65929632-65930097:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2698669433594 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 62.804 1 59.843 59.343 60.343 -2.9614 0 0 0 0.19711 1 12122 12122 4.7159 3.5011 1 + 36237 21439 24373 24389 35688 35688 -0.013039934875791914 QLQQHLRLD 9 Unmodified _QLQQHLRLD_ 0 0 0 REV__ENSG00000093217|ENST00000207870|XYLB REV__ENSG00000093217|ENST00000207870|XYLB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3199462890625 2 575.820004 1149.62546 0.13569 7.8132E-05 2.8766 0.0016564 3.0123 0.0017345 575.8231292870734 154.88 0.17422 150.1 149.98 150.16 -4.7791 5 4 2 0 0 0 0.55728 1 30783 30783 0.12781 0 1 843220 + 36238 14593 24374 24390 35689 35689 0.05662737486136393 QLQSQVAASY 10 Unmodified _QLQSQVAASY_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7782592773438 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 83.776 1 79.867 79.367 80.367 -3.9093 0 0 0 0.22552 1 15917 15917 18.146 1.9972 1 + 36239 15894 24375 24391 35690 35690 -0.0026405277033063612 QLQWQRHFLRW 11 Unmodified _QLQWQRHFLRW_ 0 0 0 OR4K5|p.L214Sfs*34|1|0.22|ENSG00000176281|chr14:19921237-19921238|-/TC|frameshift_variant OR4K5|p.L214Sfs*34|1|0.22|ENSG00000176281|chr14:19921237-19921238|-/TC|frameshift_variant OR4K5|p.L214Sfs*34|1|0.22|ENSG00000176281|chr14:19921237-19921238|-/TC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.275390625 3 533.288143 1596.8426 NaN NaN NaN NaN NaN NaN NaN 16.888 1 15.616 15.116 16.116 -1.2722 0 0 0 0.22632 1 2456 2456 0 0 1 36240 12730 24376 24392 35691 35691 0.06805132759541266 QLRHRIQD 8 Unmodified _QLRHRIQD_ 0 0 0 nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1 nc|ENSG00000113734|Q12981-2|BNIP1 nc|ENSG00000113734|Q12981-2|BNIP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2769165039062 2 533.299239 1064.58392 NaN NaN NaN NaN NaN NaN NaN 142.64 1 137.61 137.11 138.11 -5.0261 0 0 0 0.22647 1 27495 27495 0.68139 0.3018 1 36241 2760 24377 24393 35692 35692 0.05421601517468844 QLRHRLWFDLW 11 Unmodified _QLRHRLWFDLW_ 0 0 0 REV__ENST00000585141.5_1_17:62481823-62493086:-|nuORF REV__ENST00000585141.5_1_17:62481823-62493086:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3955078125 2 785.425502 1568.83645 NaN NaN NaN NaN NaN NaN NaN 144.5 1 144.5 144 145 0 0 0 0 0.22632 1 28872 28872 0.00056442 0 1 + 36242 19865 24378 24394 35693 35693 0.0747861452800862 QLRHWFRIVDV 11 Unmodified _QLRHWFRIVDV_ 0 0 0 ENSG00000171435|ENST00000339824|KSR2;KSR2|p.L536Sfs*61|3|0.48|ENSG00000171435|chr12:117539800-117539800|G/-|frameshift_variant ENSG00000171435|ENST00000339824|KSR2 ENSG00000171435|ENST00000339824|KSR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26806640625 3 490.277244 1467.8099 NaN NaN NaN NaN NaN NaN NaN 119.66 1 115.01 114.51 115.51 -4.645 0 0 0 0.22632 1 22966 22966 1.4551 0 1 36243 6143 24379 24395 35694 35694 0.0947092563667411 QLRIHRRIH 9 Unmodified _QLRIHRRIH_ 0 0 0 nc|ENSG00000171291|Q8NDP4|ZNF439;ENSG00000171291|ENST00000682736|ZNF439 nc|ENSG00000171291|Q8NDP4|ZNF439 nc|ENSG00000171291|Q8NDP4|ZNF439 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 614.9204711914062 2 614.878522 1227.74249 NaN NaN NaN NaN NaN NaN NaN 168.74 1 163.95 163.45 164.45 -4.7898 0 0 0 0.19684 1 34130 34130 0.12781 0.06395 1 36244 6134 24380 24396 35695 35695 0.13772940216404095 QLRNGLPYF 9 Unmodified _QLRNGLPYF_ 0 0 0 LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2 LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 553.7353515625 2 554.300916 1106.58728 0.19076 0.00010574 -1.2773 -0.00070803 -1.0866 -0.00060229 554.3001524292888 149.07 1.2777 144.36 143.75 145.03 -4.7095 115 35 4 0 0 0 0.86532 1 29509 29509 4.756 1.7608 1 86852000 36245 7283 24381 24397 35696 35696 0.03824851571448562 QLRNMVSVYRQ 11 Unmodified _QLRNMVSVYRQ_ 0 0 0 REV__ENSG00000186583|ENST00000377470|SPATC1 REV__ENSG00000186583|ENST00000377470|SPATC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2497253417969 3 465.250477 1392.7296 NaN NaN NaN NaN NaN NaN NaN 71.787 1 68.159 67.659 68.659 -3.6275 0 0 0 0.22632 1 13546 13546 0.2986 0 1 + 36246 19039 24382 24398 35697 35697 0.048946962513355174 QLRPGSYPY 9 Unmodified _QLRPGSYPY_ 0 0 0 REV__USP6NL|p.P808Rfs*24|1|0.23|ENSG00000148429|chr10:11462505-11462505|G/-|frameshift_variant REV__USP6NL|p.P808Rfs*24|1|0.23|ENSG00000148429|chr10:11462505-11462505|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2762451171875 2 540.777274 1079.53999 0.46256 0.00025014 -0.98589 -0.00053315 -0.52333 -0.00028301 540.7768694907782 153.15 1.2956 147.93 147.57 148.87 -5.2209 71 36 3 0 0 0 0.19983 1 29811 29811 2.8827 1.4276 1 4727400 + 36247 25527 24383 24399 35698 35698 0.003405723004561878 QLRPLILTKI 10 Unmodified _QLRPLILTKI_ 0 0 0 REV__nc|ENSG00000106290|P49848-4|TAF6 REV__nc|ENSG00000106290|P49848-4|TAF6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 597.9010620117188 2 597.900266 1193.78598 NaN NaN NaN NaN NaN NaN NaN 167.78 1 167.78 167.28 168.28 0 0 0 0 0.22588 1 34310 34310 6.7232 1.4263 1 + 36248 15038 24384 24400 35699 35699 0.19683692150306342 QLRRGKKWEIA 11 Unmodified _QLRRGKKWEIA_ 0 0 0 ENSG00000161929|ENST00000574081|SCIMP ENSG00000161929|ENST00000574081|SCIMP ENSG00000161929|ENST00000574081|SCIMP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 692.9151611328125 2 692.912227 1383.8099 NaN NaN NaN NaN NaN NaN NaN 169.54 1 164.75 164.25 165.25 -4.7898 0 0 0 0.22943 1 34350 34350 8.7454 0.58988 1 36249 5307 24385 24401 35700 35700 0.13334925636718253 QLRRLRRLRRW 11 Unmodified _QLRRLRRLRRW_ 0 0 0 REV__ENST00000551099.5_1_12:113659271-113664634:+|nuORF REV__ENST00000551099.5_1_12:113659271-113664634:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 537.0115356445312 3 537.009714 1608.00731 NaN NaN NaN NaN NaN NaN NaN 169.95 1 165.08 164.58 165.58 -4.873 0 0 0 0.23698 1 33606 33606 0.40827 0.335 1 + 36250 22929 24386 24402 35701 35701 0.22762989689999813 QLRRLWLKLTR 11 Unmodified _QLRRLWLKLTR_ 0 0 0 ENST00000336617.7_1_13:51530509-51530551:+|nuORF ENST00000336617.7_1_13:51530509-51530551:+|nuORF ENST00000336617.7_1_13:51530509-51530551:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.4005737304688 2 741.972619 1481.93069 NaN NaN NaN NaN NaN NaN NaN 166.36 1 161.41 160.91 161.91 -4.9484 0 0 0 0.23698 1 32589 32589 2.7352 1.5419 1 36251 8809 24387 24403 35702 35702 0.20899753350136052 QLRSDTPVQ 9 Unmodified _QLRSDTPVQ_ 0 0 0 REV__CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant;REV__ENST00000531150.5_1_1:26508531-26510633:+|nuORF REV__CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2774658203125 2 522.277638 1042.54072 0.17854 9.3247E-05 -0.14672 -7.6627E-05 0.031822 1.662E-05 522.2775960798298 39.71 0.52758 37.305 37.031 37.558 -2.4049 36 14 4 0 0 0 0.54076 1 7061 7061 17.113 3.2068 1 2350800 + 36252 13457;22765 24388 24404 35703 35703 0.021153669495106442 QLRTRILTFP 10 Unmodified _QLRTRILTFP_ 0 0 0 REV__ENSG00000160785|ENST00000359511|SLC25A44 REV__ENSG00000160785|ENST00000359511|SLC25A44 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7672729492188 2 622.877322 1243.74009 0.22448 0.00013983 -0.30451 -0.00018967 -0.080027 -4.9847E-05 622.8774679604285 56.374 0.84031 56.374 55.938 56.778 0 44 23 3 0 0 0 0.71778 1 10806 10806 9.3831 1.2276 1 2426000 + 36253 17435 24389 24405 35704 35704 0.12797046968057657 QLRTRILTFP 10 Unmodified _QLRTRILTFP_ 0 0 0 REV__ENSG00000160785|ENST00000359511|SLC25A44 REV__ENSG00000160785|ENST00000359511|SLC25A44 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7656860351562 2 622.877322 1243.74009 0.92133 0.00057387 -0.53364 -0.00033239 0.38769 0.00024148 622.8769717442574 59.212 0.66401 56.302 56.001 56.665 -2.9105 27 18 2 0 0 0 0.63858 2 11407 11407;11418 17.113 0.96379 1 2038600 + 36254 17435 24389 24405 35705;35706 35705 0.12797046968057657 QLRTRILTFP 10 Unmodified _QLRTRILTFP_ 0 0 0 REV__ENSG00000160785|ENST00000359511|SLC25A44 REV__ENSG00000160785|ENST00000359511|SLC25A44 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7550048828125 2 622.877322 1243.74009 NaN NaN NaN NaN NaN NaN NaN 59.633 1 56.32 55.82 56.82 -3.3139 0 0 0 0.22588 1 11091 11091 9.3831 1.7742 1 + 36255 17435 24389 24405 35707 35707 0.12797046968057657 QLRWRQRHGRG 11 Unmodified _QLRWRQRHGRG_ 0 0 0 REV__ENST00000563777.1_1_16:30933919-30934204:-|nuORF REV__ENST00000563777.1_1_16:30933919-30934204:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 725.5922241210938 2 725.405966 1448.79738 NaN NaN NaN NaN NaN NaN NaN 168.97 1 168.97 168.47 169.47 0 0 0 0 0.23324 1 34655 34655 5.7319 0 1 + 36256 23085 24390 24406 35708 35708 0.0909332701698986 QLSCRTQGPP 10 Unmodified _QLSCRTQGPP_ 0 0 0 REV__ENST00000520220.6_2_8:56792441-56792612:+|nuORF REV__ENST00000520220.6_2_8:56792441-56792612:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7701416015625 2 543.771665 1085.52878 NaN NaN NaN NaN NaN NaN NaN 78.255 1 74.489 73.989 74.989 -3.7664 0 0 0 0.22588 1 14838 14838 12.241 1.4167 1 + 36257 22632 24391 24407 35709 35709 -0.010565730653070204 QLSEESEFL 9 Unmodified _QLSEESEFL_ 0 0 0 TLR1|p.K70Nfs*2|1|0.37|ENSG00000174125|chr4:38798622-38798622|T/-|frameshift_variant;ENSG00000174125|ENST00000308979|TLR1 TLR1|p.K70Nfs*2|1|0.37|ENSG00000174125|chr4:38798622-38798622|T/-|frameshift_variant TLR1|p.K70Nfs*2|1|0.37|ENSG00000174125|chr4:38798622-38798622|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2632446289062 2 541.256037 1080.49752 0.20311 0.00010993 -0.022707 -1.229E-05 0.1804 9.7643E-05 541.2559873372965 82.779 0.84407 79.171 78.775 79.619 -3.6079 60 23 3 0 0 0 0.56623 1 16248 16248 16.149 0 1 13373000 36258 6330 24392 24408 35710 35710 -0.03950867618414122 QLSISNWAY 9 Unmodified _QLSISNWAY_ 0 0 0 ENST00000557374.1_1_14:52957560-53019203:-|nuORF ENST00000557374.1_1_14:52957560-53019203:-|nuORF ENST00000557374.1_1_14:52957560-53019203:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2798461914062 2 541.269281 1080.52401 0.21225 0.00011488 -0.6732 -0.00036438 -0.46095 -0.0002495 541.2688654322277 95.492 1.0338 91.301 90.545 91.579 -4.1911 41 29 2 0 0 0 0.48644 1 18262 18262 20.454 1.0917 1 1510500 36259 11254 24393 24409 35711 35711 -0.013031339364488304 QLSRLHCW 8 Unmodified _QLSRLHCW_ 0 0 0 REV__nc|ENSG00000196417|Q7L2R6-3|ZNF765 REV__nc|ENSG00000196417|Q7L2R6-3|ZNF765 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2673950195312 2 521.766186 1041.51782 -1.5386 -0.00080277 0.12827 6.6929E-05 -1.4103 -0.00073584 521.7663293806626 15.443 3.2314 14.09 13.507 16.739 -1.3534 185 92 4 0 0 0 0.74398 1 2035 2035 7.9102 7.9102 1 13595000 + 36260 24222 24394 24410 35712 35712 -0.0012793064895504358 QLTDDTLL 8 Unmodified _QLTDDTLL_ 0 0 0 REV__GCFC2|p.W710Mfs*3|1|0.22|ENSG00000005436|chr2:75666029-75666030|-/T|frameshift_variant REV__GCFC2|p.W710Mfs*3|1|0.22|ENSG00000005436|chr2:75666029-75666030|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5382385253906 2 459.742565 917.470577 0.12832 5.8996E-05 0.13763 6.3276E-05 0.26596 0.00012227 459.74255461188 118.1 0.97391 113.6 113.1 114.08 -4.502 76 27 4 0 0 0 0.64227 1 23316 23316 19.439 0 1 22845000 + 36261 13858 24395 24411 35713 35713 0.008540685610569199 QLTDLNVQL 9 Unmodified _QLTDLNVQL_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.N1805Tfs*6|1|0.38|ENSG00000144674|chr3:37327294-37327294|A/-|frameshift_variant;GOLGA4|p.N1805Kfs*18|1|0.11|ENSG00000144674|chr3:37327293-37327294|-/A|frameshift_variant nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2744750976562 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 149.1 1 144.04 143.54 144.54 -5.0595 0 0 0 0.070386 1 28887 28887 43.858 14.777 1 36262 4568 24396 24412 35714 35714 0.04629421752088092 QLTDLNVQL 9 Unmodified _QLTDLNVQL_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.N1805Tfs*6|1|0.38|ENSG00000144674|chr3:37327294-37327294|A/-|frameshift_variant;GOLGA4|p.N1805Kfs*18|1|0.11|ENSG00000144674|chr3:37327293-37327294|-/A|frameshift_variant nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2688598632812 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 149.13 1 144.03 143.53 144.53 -5.1042 0 0 0 0.070386 1 28893 28893 43.858 11.073 1 36263 4568 24396 24412 35715 35715 0.04629421752088092 QLTDLNVQL 9 Unmodified _QLTDLNVQL_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.N1805Tfs*6|1|0.38|ENSG00000144674|chr3:37327294-37327294|A/-|frameshift_variant;GOLGA4|p.N1805Kfs*18|1|0.11|ENSG00000144674|chr3:37327293-37327294|-/A|frameshift_variant nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.276611328125 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 149.31 1 144.19 143.69 144.69 -5.1204 0 0 0 0.19512 1 28930 28930 12.241 11.832 1 36264 4568 24396 24412 35716 35716 0.04629421752088092 QLTEELQAL 9 Unmodified _QLTEELQAL_ 0 0 0 REV__ENSG00000143669|ENST00000389793|LYST REV__ENSG00000143669|ENST00000389793|LYST MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6831665039062 2 522.782222 1043.54989 0.18962 9.9129E-05 -0.5413 -0.00028298 -0.35168 -0.00018385 522.7820774000669 122.98 0.60078 122.98 122.67 123.27 0 26 16 3 0 0 0 0.46882 1 24226 24226 21.537 3.3906 1 3653400 + 36265 16745 24397 24413 35717 35717 0.02985715515183074 QLTHLPKTR 9 Unmodified _QLTHLPKTR_ 0 0 0 ENST00000554512.1_1_14:50195724-50217770:+|nuORF;KLHDC1|p.I377*|3|0.17|ENSG00000197776|chr14:49751674-49751674|A/-|frameshift_variant;ENSG00000197776|ENST00000359332|KLHDC1;ENST00000556392.5_1_14:50159826-50218487:+|nuORF;ENST00000555704.5_1_14:50159830-50218487:+|nuORF ENST00000554512.1_1_14:50195724-50217770:+|nuORF ENST00000554512.1_1_14:50195724-50217770:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.79248046875 2 547.327465 1092.64038 0.14954 8.1846E-05 0.1507 8.2481E-05 0.30023 0.00016433 547.3268441317337 148.95 0.2381 143.8 143.65 143.88 -5.1557 8 6 2 0 0 0 0.65387 1 28814 28814 9.3831 2.0939 1 1488900 36266 7399 24398 24414 35718 35718 0.0977622935411091 QLTHRWVF 8 Unmodified _QLTHRWVF_ 0 0 0 REV__ENST00000305901.6_1_15:53049335-53049596:-|nuORF REV__ENST00000305901.6_1_15:53049335-53049596:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.795166015625 2 543.795801 1085.57705 0.32043 0.00017425 -1.392 -0.00075699 -1.0716 -0.00058274 543.7949253598426 101.07 0.47322 96.773 96.572 97.045 -4.297 25 13 2 0 0 0 0.73936 1 19307 19307 8.5933 0.98433 1 2299100 + 36267 20436 24399 24415 35719 35719 0.03768288636888428 QLTLPSLRLY 10 Unmodified _QLTLPSLRLY_ 0 0 0 ENST00000477081.1_1_17:59477759-59482423:+|nuORF;ENSG00000121068|ENST00000240328|TBX2 ENST00000477081.1_1_17:59477759-59482423:+|nuORF ENST00000477081.1_1_17:59477759-59482423:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2999877929688 2 602.358431 1202.70231 0.17677 0.00010648 -1.661 -0.0010005 -1.4842 -0.00089404 602.3557032956205 109.29 0.13263 104.83 104.78 104.91 -4.4518 5 3 2 0 0 0 0.85223 1 20980 20980 8.7454 3.0136 1 525680 36268 3167 24400 24416 35720 35720 0.1090653598262179 QLTLQHHMG 9 Unmodified _QLTLQHHMG_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3;nc|ENSG00000036257|Q13618-3|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.283203125 2 532.768926 1063.5233 0.099539 5.3032E-05 4.109 0.0021891 4.2085 0.0022422 533.2720080387271 156.34 0.20491 156.34 156.28 156.48 0 6 5 2 0 0 0 0.48644 1 31383 31383 20.454 4.6064 1 1126700 36269 1171 24401 24417 35721 35721 -0.005922518571196633 QLTNVFETL 9 Unmodified _QLTNVFETL_ 0 0 0 REV__ENST00000482887.1_1_2:100053173-100055204:-|nuORF REV__ENST00000482887.1_1_2:100053173-100055204:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2692260742188 2 532.784764 1063.55498 NaN NaN NaN NaN NaN NaN NaN 62.567 1 59.605 59.105 60.105 -2.9614 0 0 0 0.20294 1 12074 12074 22.736 0 1 + 36270 16301 24402 24418 35722 35722 0.025740193778119647 QLTPIREALY 10 Unmodified _QLTPIREALY_ 0 0 0 REV__TNNI1|p.R43C|1|0.39|ENSG00000159173|chr1:201414580-201414580|G/A|missense_variant REV__TNNI1|p.R43C|1|0.39|ENSG00000159173|chr1:201414580-201414580|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2833862304688 2 602.340238 1202.66592 NaN NaN NaN NaN NaN NaN NaN 74.795 1 71.119 70.619 71.619 -3.6764 0 0 0 0.22588 1 14140 14140 11.64 0 1 + 36271 17360 24403 24419 35723 35723 0.07269659085886815 QLTPVLVSV 9 Unmodified _QLTPVLVSV_ 0 0 0 ABCC2|p.G853Efs*7|1|0.28|ENSG00000023839|chr10:99819200-99819200|A/-|frameshift_variant;ENSG00000023839|ENST00000647814|ABCC2 ABCC2|p.G853Efs*7|1|0.28|ENSG00000023839|chr10:99819200-99819200|A/-|frameshift_variant ABCC2|p.G853Efs*7|1|0.28|ENSG00000023839|chr10:99819200-99819200|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.736083984375 2 478.294768 954.574983 0.16991 8.1266E-05 0.0086415 4.1332E-06 0.17855 8.5399E-05 478.2946994855741 158.41 0.53717 153.62 153.37 153.91 -4.7952 22 14 2 0 0 0 0.11483 1 31481 31481 14.987 12.355 1 1591200 36272 17 24404 24420 35724 35724 0.09587815108432096 QLTPVLVSV 9 Unmodified _QLTPVLVSV_ 0 0 0 ABCC2|p.G853Efs*7|1|0.28|ENSG00000023839|chr10:99819200-99819200|A/-|frameshift_variant;ENSG00000023839|ENST00000647814|ABCC2 ABCC2|p.G853Efs*7|1|0.28|ENSG00000023839|chr10:99819200-99819200|A/-|frameshift_variant ABCC2|p.G853Efs*7|1|0.28|ENSG00000023839|chr10:99819200-99819200|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73468017578125 2 478.294768 954.574983 0.16926 8.0955E-05 -0.31888 -0.00015252 -0.14962 -7.1563E-05 478.2945142482352 159.09 0.4317 153.81 153.68 154.11 -5.2748 17 11 2 0 0 0 0.15889 2 30872 30872;30874 39.95 4.5944 1 1096300 36273 17 24404 24420 35725;35726 35725 0.09587815108432096 QLTSSSLPE 9 Unmodified _QLTSSSLPE_ 0 0 0 REV__ENSG00000215910|ENST00000688073|C1orf167 REV__ENSG00000215910|ENST00000688073|C1orf167 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7745056152344 2 481.245472 960.476391 0.3191 0.00015356 -0.83892 -0.00040372 -0.51982 -0.00025016 481.2447600690311 100.98 0.5555 96.994 96.789 97.345 -3.9895 23 15 2 0 0 0 0.33512 1 19393 19393 2.6312 0 1 592860 + 36274 19696 24405 24421 35727 35727 -0.005428329272831434 QLVHIKDEP 9 Unmodified _QLVHIKDEP_ 0 0 0 HUWE1|p.A3909V|1|0.58|ENSG00000086758|chrX:53538987-53538987|G/A|missense_variant HUWE1|p.A3909V|1|0.58|ENSG00000086758|chrX:53538987-53538987|G/A|missense_variant HUWE1|p.A3909V|1|0.58|ENSG00000086758|chrX:53538987-53538987|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 128 0.99999 123.38 122.88 123.88 -4.6172 0 0 0 0.23508 1 25238 25238 2.2828 0.43854 1 36275 11926 24406 24422 35728 35728 0.046171279889904326 QLVHIKDEP 9 Unmodified _QLVHIKDEP_ 0 0 0 HUWE1|p.A3909V|1|0.58|ENSG00000086758|chrX:53538987-53538987|G/A|missense_variant HUWE1|p.A3909V|1|0.58|ENSG00000086758|chrX:53538987-53538987|G/A|missense_variant HUWE1|p.A3909V|1|0.58|ENSG00000086758|chrX:53538987-53538987|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2026062011719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 75.075 1 71.481 70.981 71.981 -3.594 0 0 0 0.23508 1 14267 14267 4.5289 1.7937 1 36276 11926 24406 24422 35729 35729 0.046171279889904326 QLVLLRPRRL 10 Unmodified _QLVLLRPRRL_ 0 0 0 ENSG00000187024|ENST00000543175|PTRH1 ENSG00000187024|ENST00000543175|PTRH1 ENSG00000187024|ENST00000543175|PTRH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 632.5228881835938 2 632.422231 1262.82991 NaN NaN NaN NaN NaN NaN NaN 171.29 1 166.5 166 167 -4.7898 0 0 0 0.22588 1 34819 34819 3.5965 0 1 36277 7090 24407 24423 35730 35730 0.20900721367297592 QLVMKDSGV 9 Unmodified _QLVMKDSGV_ 0 0 0 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 488.7936706542969 2 488.760235 975.505917 NaN NaN NaN NaN NaN NaN NaN 127.88 1 123.18 122.68 123.68 -4.6998 0 0 0 0.16777 1 24604 24604 22.736 0.6274 1 36278 12082 24408 24424 35731 35731 0.01718407817213574 QLVRQSAQN 9 Unmodified _QLVRQSAQN_ 0 0 0 REV__ENST00000263382.7_1_19:14231048-14231270:-|nuORF REV__ENST00000263382.7_1_19:14231048-14231270:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2826538085938 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 71.193 1 67.613 67.113 68.113 -3.5798 0 0 0 0.04992 1 13423 13423 52.268 12.311 1 + 36279 20213 24409 24425 35732 35732 0.032381890436681715 QLVTQLHWQ 9 Unmodified _QLVTQLHWQ_ 0 0 0 ENSG00000138073|ENST00000260643|PREB;ENST00000474802.1_1_2:27355436-27356101:-|nuORF;ENST00000468045.5_1_2:27354838-27356101:-|nuORF ENSG00000138073|ENST00000260643|PREB ENSG00000138073|ENST00000260643|PREB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 384.8546447753906 3 384.876857 1151.60874 -0.49822 -0.00019175 -3.3416 -0.0012861 -3.8399 -0.0014779 384.87565044556334 16.641 0.14111 15.419 15.331 15.472 -1.2219 5 3 2 0 0 0 0.58921 1 2413 2413 8.1555 7.8901 1 274540 36280 4145 24410 24426 35733 35733 0.03900236600156859 QLVTQLHWQ 9 Unmodified _QLVTQLHWQ_ 0 0 0 ENSG00000138073|ENST00000260643|PREB;ENST00000474802.1_1_2:27355436-27356101:-|nuORF;ENST00000468045.5_1_2:27354838-27356101:-|nuORF ENSG00000138073|ENST00000260643|PREB ENSG00000138073|ENST00000260643|PREB MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 384.876857 1151.60874 -0.20971 -8.0714E-05 -3.607 -0.0013883 -3.8167 -0.001469 384.8754035425895 15.455 0.31317 15.455 15.294 15.607 0 0.033838 -0.00051466 NaN 8.1555 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 525840 36281 4145 24410 24426 0.03900236600156859 QLVTQLHWQ 9 Unmodified _QLVTQLHWQ_ 0 0 0 ENSG00000138073|ENST00000260643|PREB;ENST00000474802.1_1_2:27355436-27356101:-|nuORF;ENST00000468045.5_1_2:27354838-27356101:-|nuORF ENSG00000138073|ENST00000260643|PREB ENSG00000138073|ENST00000260643|PREB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 384.876857 1151.60874 -2.0706 -0.00079693 -2.0622 -0.00079369 -4.1328 -0.0015906 384.8760946844009 16.742 0.16823 15.388 15.304 15.472 -1.3534 -0.032409 0.001269 NaN 8.1555 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 173530 36282 4145 24410 24426 0.03900236600156859 QLWAWMMK 8 Unmodified _QLWAWMMK_ 0 0 0 REV__ENSG00000137462|ENST00000642700|TLR2 REV__ENSG00000137462|ENST00000642700|TLR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.776611328125 2 547.269716 1092.52488 0.75889 0.00041532 2.9131 0.0015942 3.672 0.0020096 547.2715444587942 79.833 0.35088 79.833 79.651 80.002 0 19 9 3 0 0 0 0.64227 1 15552 15552 19.439 2.4967 1 1067400 + 36283 16391 24411 24427 35734 35734 -0.017683340927305835 QLWLWWRREWI 11 Unmodified _QLWLWWRREWI_ 0 0 0 KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant;KRT6B|p.G65Rfs*80|1|0.06|ENSG00000185479|chr12:52451861-52451886|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 558.0076293945312 3 557.96841 1670.8834 NaN NaN NaN NaN NaN NaN NaN 163.66 1 158.87 158.37 159.37 -4.7898 0 0 0 0.23698 1 32644 32644 0.08335 0.08335 1 36284 12014 24412 24428 35735 35735 0.0747947407915035 QLWPNSLT 8 Unmodified _QLWPNSLT_ 0 0 0 REV__PRKD1|p.H836N|1|0.47|ENSG00000184304|chr14:29578289-29578289|G/T|missense_variant REV__PRKD1|p.H836N|1|0.47|ENSG00000184304|chr14:29578289-29578289|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.1712341308594 3 320.17127 957.491981 NaN NaN NaN NaN NaN NaN NaN 96.685 1 92.587 92.087 93.087 -4.0978 0 0 0 0.21486 1 18965 18965 1.6526 0 1 + 36285 24509 24413 24429 35736 35736 0.011534983804040166 QLWWRNWFWVH 11 Unmodified _QLWWRNWFWVH_ 0 0 0 ENST00000437634.1_1_2:154277901-154278186:-|nuORF ENST00000437634.1_1_2:154277901-154278186:-|nuORF ENST00000437634.1_1_2:154277901-154278186:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 552.9861450195312 3 553.277355 1656.81024 0.32809 0.00018152 0.478 0.00026447 0.80609 0.00044599 553.6119325278312 173.31 0.10066 173.31 173.25 173.35 0 4 2 2 0 0 0 0.96227 1 35821 35821 0 0 1 4147500 36286 9853 24414 24430 35737 35737 0.008103453565126983 QLYEKEIR 8 Unmodified _QLYEKEIR_ 0 0 0 CON__H-INV:HIT000292931 CON__H-INV:HIT000292931 CON__H-INV:HIT000292931 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 97.366 1 93.132 92.632 93.632 -4.2348 0 0 0 0.21292 1 18598 18598 14.838 0 1 + 36287 647 24415 24431 35738 35738 0.046171279889904326 QLYQEHHEEDF 11 Unmodified _QLYQEHHEEDF_ 0 0 0 ENSG00000170296|ENST00000302386|GABARAP ENSG00000170296|ENST00000302386|GABARAP ENSG00000170296|ENST00000302386|GABARAP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 492.2923889160156 3 492.212634 1473.61607 NaN NaN NaN NaN NaN NaN NaN 135.55 1 130.65 130.15 131.15 -4.8951 0 0 0 0.22632 1 26040 26040 1.4551 0 1 36288 6057 24416 24432 35739 35739 -0.10179120380735185 QLYSNPTTY 9 Unmodified _QLYSNPTTY_ 0 0 0 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7794799804688 2 543.758746 1085.50294 0.32557 0.00017703 -2.2565 -0.001227 -1.9309 -0.0010499 543.7575964102936 101.25 0.67157 96.956 96.505 97.176 -4.297 27 19 2 0 0 0 0.28819 1 19400 19400 32.305 0 1 1955100 + 36289 18990 24417 24433 35740 35740 -0.03639144035946629 QMAEIAVNA 9 Oxidation (M) _QM(Oxidation (M))AEIAVNA_ QM(1)AEIAVNA QM(82)AEIAVNA 0 0 1 ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5 ENST00000423695.6_1_5:10250480-10261980:+|nuORF ENST00000423695.6_1_5:10250480-10261980:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7664489746094 2 481.734217 961.453881 NaN NaN NaN NaN NaN NaN NaN 57.352 1 54.458 53.958 54.958 -2.8944 0 0 0 0.00051768 1 11005 11005 81.89 34.142 1 36290 4835 24418 24434 35741 35741 76 -0.028387555965423417 QMAEIAVNA 9 Oxidation (M) _QM(Oxidation (M))AEIAVNA_ QM(1)AEIAVNA QM(72)AEIAVNA 0 0 1 ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5 ENST00000423695.6_1_5:10250480-10261980:+|nuORF ENST00000423695.6_1_5:10250480-10261980:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7655944824219 2 481.734217 961.453881 NaN NaN NaN NaN NaN NaN NaN 57.785 1 54.58 54.08 55.08 -3.2052 0 0 0 0.010137 1 10770 10770 71.922 27.515 1 36291 4835 24418 24434 35742 35742 76 -0.028387555965423417 QMAEMDPV 8 Unmodified _QMAEMDPV_ 0 0 0 ENST00000472013.1_1_1:42922230-42922863:+|nuORF ENST00000472013.1_1_1:42922230-42922863:+|nuORF ENST00000472013.1_1_1:42922230-42922863:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2325744628906 2 460.696246 919.377939 -0.1625 -7.4863E-05 1.0903 0.00050228 0.92776 0.00042742 460.69671325625217 114.2 0.91608 109.73 109.27 110.18 -4.4726 34 25 2 0 0 0 8448 1 22548 22548 0.62683 0 1 1239300 36292 10218 24419 24435 35743 35743 -0.08497475768331242 QMAEMDPV 8 Unmodified _QMAEMDPV_ 0 0 0 ENST00000472013.1_1_1:42922230-42922863:+|nuORF ENST00000472013.1_1_1:42922230-42922863:+|nuORF ENST00000472013.1_1_1:42922230-42922863:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.696246 919.377939 -0.1625 -7.4863E-05 1.0903 0.00050228 0.92776 0.00042742 460.69671325625217 114.2 0.91608 109.73 109.27 110.18 -4.4726 0.0025477 3.3344E-05 NaN 0.62683 34 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1239300 36293 10218 24419 24435 -0.08497475768331242 QMAEMDPV 8 Unmodified _QMAEMDPV_ 0 0 0 ENST00000472013.1_1_1:42922230-42922863:+|nuORF ENST00000472013.1_1_1:42922230-42922863:+|nuORF ENST00000472013.1_1_1:42922230-42922863:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.696246 919.377939 0.087296 4.0217E-05 1.137 0.00052382 1.2243 0.00056404 460.6967710078994 114.25 1.0171 109.7 109.21 110.22 -4.555 -0.028042 7.6429E-05 NaN 0.62683 45 28 2 NaN NaN NaN NaN 0 NaN NaN 0 2581000 36294 10218 24419 24435 -0.08497475768331242 QMDVHDGRSWY 11 Unmodified _QMDVHDGRSWY_ 0 0 0 ENST00000554157.5_1_14:20763469-20774096:-|nuORF;ENSG00000136319|ENST00000258821|TTC5 ENST00000554157.5_1_14:20763469-20774096:-|nuORF ENST00000554157.5_1_14:20763469-20774096:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24609375 3 465.203304 1392.58808 -0.12584 -5.8541E-05 -0.33541 -0.00015603 -0.46125 -0.00021457 465.5375816243953 75.07 0.59064 71.705 71.378 71.969 -3.3643 33 16 3 0 0 0 0.65515 2 14625 14625;14628 8.2081 2.8054 1 3343500 36295 4003 24420 24436 35744;35745 35744 -0.09250721841794984 QMDVHDGRSWY 11 Unmodified _QMDVHDGRSWY_ 0 0 0 ENST00000554157.5_1_14:20763469-20774096:-|nuORF;ENSG00000136319|ENST00000258821|TTC5 ENST00000554157.5_1_14:20763469-20774096:-|nuORF ENST00000554157.5_1_14:20763469-20774096:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2579040527344 3 465.203304 1392.58808 0.10061 4.6806E-05 -0.43352 -0.00020168 -0.33291 -0.00015487 465.2030730313573 75.303 0.48688 71.581 71.271 71.758 -3.7227 35 13 4 0 0 0 0.955 1 14262 14262 12.35 10.895 1 2651700 36296 4003 24420 24436 35746 35746 -0.09250721841794984 QMFSLAHRP 9 Unmodified _QMFSLAHRP_ 0 0 0 ENSG00000165487|ENST00000382374|MICU2;ENST00000479790.2_1_13:22070152-22077202:-|nuORF ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7783813476562 2 543.779293 1085.54403 NaN NaN NaN NaN NaN NaN NaN 13.669 1 13.669 13.169 14.169 0 0 0 0 0.19622 1 1989 1989 0.96228 0.26461 1 36297 5631 24421 24437 35747 35747 0.004683385225234815 QMGGHPTEV 9 Unmodified _QMGGHPTEV_ 0 0 0 ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7210693359375 2 478.218734 954.422915 0.87853 0.00042013 -1.2114 -0.0005793 -0.33283 -0.00015916 478.2178631922179 27.847 0.45294 25.891 25.563 26.016 -1.9561 18 12 2 0 0 0 0.35443 1 4956 4956 28.487 12.64 1 1257900 36298 1327 24422 24438 35748 35748 -0.05611908910782404 QMGGHPTEV 9 Unmodified _QMGGHPTEV_ 0 0 0 ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.218734 954.422915 0.21586 0.00010323 0.073789 3.5287E-05 0.28965 0.00013851 478.21843236124204 27.649 0.27986 25.894 25.72 26 -1.7552 0.0015595 0.00051257 NaN 28.487 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 683610 36299 1327 24422 24438 -0.05611908910782404 QMISRIEYI 9 Unmodified _QMISRIEYI_ 0 0 0 ENST00000578904.1_1_17:80208040-80213403:-|nuORF;CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant;CSNK1D|p.R358Gfs*12|1|0.25|ENSG00000141551|chr17:82249000-82249000|G/-|frameshift_variant;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E ENST00000578904.1_1_17:80208040-80213403:-|nuORF ENST00000578904.1_1_17:80208040-80213403:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3342895507812 2 576.807716 1151.60088 0.13788 7.9529E-05 0.15542 8.9646E-05 0.29329 0.00016917 576.8078339475942 126.33 0.56699 121.71 121.38 121.94 -4.6167 32 15 3 0 0 0 0.27332 1 24944 24944 51.63 15.503 1 3816600 36300 730 24423 24439 35749 35749 0.031143412884148347 QMISRIEYI 9 Unmodified _QMISRIEYI_ 0 0 0 ENST00000578904.1_1_17:80208040-80213403:-|nuORF;CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant;CSNK1D|p.R358Gfs*12|1|0.25|ENSG00000141551|chr17:82249000-82249000|G/-|frameshift_variant;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E ENST00000578904.1_1_17:80208040-80213403:-|nuORF ENST00000578904.1_1_17:80208040-80213403:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3297119140625 2 576.807716 1151.60088 0.37845 0.00021829 -0.19233 -0.00011094 0.18612 0.00010736 576.8076293250466 126.56 0.73254 121.76 121.43 122.16 -4.7958 29 20 2 0 0 0 0.026883 1 24276 24276 106.94 44.367 1 3986600 36301 730 24423 24439 35750 35750 0.031143412884148347 QMISRIEYI 9 Unmodified _QMISRIEYI_ 0 0 0 ENST00000578904.1_1_17:80208040-80213403:-|nuORF;CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant;CSNK1D|p.R358Gfs*12|1|0.25|ENSG00000141551|chr17:82249000-82249000|G/-|frameshift_variant;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E ENST00000578904.1_1_17:80208040-80213403:-|nuORF ENST00000578904.1_1_17:80208040-80213403:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3329467773438 2 576.807716 1151.60088 0.19702 0.00011364 -0.18115 -0.00010449 0.015874 9.156E-06 576.8077825937781 126.38 0.75856 121.68 121.39 122.15 -4.6998 29 20 2 0 0 0 0.21913 1 24322 24322 43.982 24.356 1 2146000 36302 730 24423 24439 35751 35751 0.031143412884148347 QMLAKFSKKA 10 Unmodified _QMLAKFSKKA_ 0 0 0 nc|ENSG00000130595|P45378-4|TNNT3 nc|ENSG00000130595|P45378-4|TNNT3 nc|ENSG00000130595|P45378-4|TNNT3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3342895507812 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 48.037 1 45.168 44.668 45.668 -2.869 0 0 0 0.22588 1 9083 9083 8.7454 2.0222 1 36303 12320 24424 24440 35752 35752 0.08394924422009353 QMLQKIQFYRE 11 Unmodified _QMLQKIQFYRE_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.387451171875 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 76.867 1 76.867 76.367 77.367 0 0 0 0 0.22632 1 14937 14937 0.026206 0 1 36304 12546 24425 24441 35753 35753 0.04324733708358508 QMLQKIQFYRE 11 Unmodified _QMLQKIQFYRE_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3892822265625 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 122.15 1 122.15 121.65 122.65 0 0 0 0 0.22632 1 24083 24083 0.172 0.14579 1 36305 12546 24425 24441 35754 35754 0.04324733708358508 QMLQKIQFYRE 11 Unmodified _QMLQKIQFYRE_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3876342773438 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 142.5 1 142.5 142 143 0 0 0 0 0.22632 1 28411 28411 0.026206 0 1 36306 12546 24425 24441 35755 35755 0.04324733708358508 QMLQKIQFYRE 11 Unmodified _QMLQKIQFYRE_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.388671875 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 139.67 1 135.03 134.53 135.53 -4.6439 0 0 0 0.22632 1 27575 27575 0.026206 0 1 36307 12546 24425 24441 35756 35756 0.04324733708358508 QMLQKIQFYRE 11 Unmodified _QMLQKIQFYRE_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3912353515625 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 163.49 1 158.7 158.2 159.2 -4.7898 0 0 0 0.22632 1 32593 32593 0.026206 0 1 36308 12546 24425 24441 35757 35757 0.04324733708358508 QMLQKIQFYRE 11 Unmodified _QMLQKIQFYRE_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3894653320312 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 95.136 1 90.945 90.445 91.445 -4.1911 0 0 0 0.22632 1 18156 18156 0.026206 0 1 36309 12546 24425 24441 35758 35758 0.04324733708358508 QMLQKIQFYRE 11 Unmodified _QMLQKIQFYRE_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3909301757812 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 126.85 1 122.05 121.55 122.55 -4.7958 0 0 0 0.22632 1 24346 24346 0.026206 0 1 36310 12546 24425 24441 35759 35759 0.04324733708358508 QMLQKIQFYRE 11 Unmodified _QMLQKIQFYRE_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3912963867188 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 138.1 1 133.18 132.68 133.68 -4.9216 0 0 0 0.22632 1 26555 26555 0.026206 0 1 36311 12546 24425 24441 35760 35760 0.04324733708358508 QMLQKIQFYRE 11 Unmodified _QMLQKIQFYRE_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3887939453125 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 126.66 1 121.96 121.46 122.46 -4.6998 0 0 0 0.22632 1 24365 24365 0.026206 0 1 36312 12546 24425 24441 35761 35761 0.04324733708358508 QMLQKIQFYRE 11 Unmodified _QMLQKIQFYRE_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3895874023438 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 127.58 1 122.88 122.38 123.38 -4.6998 0 0 0 0.22632 1 24543 24543 0.00056442 0 1 36313 12546 24425 24441 35762 35762 0.04324733708358508 QMLQKIQFYRE 11 Unmodified _QMLQKIQFYRE_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.389892578125 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 129.41 1 124.67 124.17 125.17 -4.7408 0 0 0 0.22632 1 24901 24901 0.00056442 0 1 36314 12546 24425 24441 35763 35763 0.04324733708358508 QMLQKIQFYRE 11 Unmodified _QMLQKIQFYRE_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.39013671875 2 742.389936 1482.76532 NaN NaN NaN NaN NaN NaN NaN 155.74 1 150.49 149.99 150.99 -5.2526 0 0 0 0.22632 1 30202 30202 0.026206 0 1 36315 12546 24425 24441 35764 35764 0.04324733708358508 QMMQNPQILAA 11 Unmodified _QMMQNPQILAA_ 0 0 0 ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1 ENSG00000187109|ENST00000618691|NAP1L1 ENSG00000187109|ENST00000618691|NAP1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7517700195312 2 622.809933 1243.60531 NaN NaN NaN NaN NaN NaN NaN 118.34 1 113.94 113.44 114.44 -4.4088 0 0 0 0.23018 1 22772 22772 8.1555 1.9497 1 36316 7096 24426 24442 35765 35765 -0.006745175603100506 QMNECMNEVY 10 Unmodified _QMNECMNEVY_ 0 0 0 REV__nc|ENSG00000078618|O43847-2|NRDC REV__nc|ENSG00000078618|O43847-2|NRDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7503662109375 2 630.738316 1259.46208 0.95314 0.00060118 0.61776 0.00038964 1.5709 0.00099083 631.2398610378184 93.766 0.51437 89.775 89.487 90.001 -3.9907 22 14 2 0 0 0 0.744 1 18348 18348 6.7232 0 1 1739300 + 36317 14384 24427 24443 35766 35766 -0.15727312733747567 QMNECMNEVY 10 Unmodified _QMNECMNEVY_ 0 0 0 REV__nc|ENSG00000078618|O43847-2|NRDC REV__nc|ENSG00000078618|O43847-2|NRDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7776489257812 2 630.738316 1259.46208 0.29634 0.00018691 0.19075 0.00012031 0.48709 0.00030723 631.2394489330919 93.481 0.42133 89.637 89.466 89.887 -3.844 16 11 2 0 0 0 0.71778 1 17942 17942 9.3831 1.2276 1 1622000 + 36318 14384 24427 24443 35767 35767 -0.15727312733747567 QMNECMNEVY 10 Unmodified _QMNECMNEVY_ 0 0 0 REV__nc|ENSG00000078618|O43847-2|NRDC REV__nc|ENSG00000078618|O43847-2|NRDC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7516479492188 2 630.738316 1259.46208 0.29634 0.00018691 0.19075 0.00012031 0.48709 0.00030723 631.2394489330919 93.481 0.42133 89.637 89.466 89.887 -3.844 16 11 2 0 0 0 0.91149 1 17908 17908 6.7232 0 1 1622000 + 36319 14384 24427 24443 35768 35768 -0.15727312733747567 QMQQCPPP 8 Unmodified _QMQQCPPP_ 0 0 0 ENST00000546084.5_1_9:123664731-123664899:-|nuORF ENST00000546084.5_1_9:123664731-123664899:-|nuORF ENST00000546084.5_1_9:123664731-123664899:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1644287109375 3 310.138696 927.394258 NaN NaN NaN NaN NaN NaN NaN 20.45 1 20.45 19.95 20.95 0 0 0 0 0.21486 1 3385 3385 1.8442 0 1 36320 11126 24428 24444 35769 35769 -0.07234349811574248 QMQQHHHH 8 Unmodified _QMQQHHHH_ 0 0 0 REV__ENSG00000141867|ENST00000679869|BRD4 REV__ENSG00000141867|ENST00000679869|BRD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2728271484375 2 541.738491 1081.46243 0.40801 0.00022103 2.0004 0.0010837 2.4084 0.0013047 541.7391595527338 28.32 0.73097 26.323 26.169 26.9 -1.9962 36 20 3 0 0 0 0.98792 1 4879 4879 14.582 4.5078 1 907660 + 36321 16653 24429 24445 35770 35770 -0.07504344116705397 QMVVPEKM 8 Unmodified _QMVVPEKM_ 0 0 0 ENST00000411643.1_1_6:36354608-36359621:+|nuORF ENST00000411643.1_1_6:36354608-36359621:+|nuORF ENST00000411643.1_1_6:36354608-36359621:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2451477050781 2 481.245906 960.477259 NaN NaN NaN NaN NaN NaN NaN 27.577 1 25.821 25.321 26.321 -1.7552 0 0 0 0.22699 1 4620 4620 0.68139 0 1 36322 9578 24430 24446 35771 35771 -0.004560330835715831 QNEEYCEY 8 Unmodified _QNEEYCEY_ 0 0 0 REV__ENSG00000196110|ENST00000591998|ZNF699 REV__ENSG00000196110|ENST00000591998|ZNF699 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2793579101562 2 539.195122 1076.37569 0.49061 0.00026453 -3.8086 -0.0020536 -3.318 -0.0017891 539.1949963276331 33.313 0.40904 31.097 30.874 31.283 -2.2158 40 11 5 0 0 0 0.77935 1 5770 5770 5.2307 0 1 1519500 + 36323 19216 24431 24447 35772 35772 -0.15944232972447026 QNEEYCEY 8 Unmodified _QNEEYCEY_ 0 0 0 REV__ENSG00000196110|ENST00000591998|ZNF699 REV__ENSG00000196110|ENST00000591998|ZNF699 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 539.195122 1076.37569 0.28826 0.00015543 -3.8211 -0.0020603 -3.5328 -0.0019049 539.1953498333114 31.241 0.56257 31.241 30.968 31.53 0 0.071761 -6.2685E-06 NaN 5.2307 47 15 5 NaN NaN NaN NaN 0 NaN NaN 0 3949400 + 36324 19216 24431 24447 -0.15944232972447026 QNEVFGLFQ 9 Unmodified _QNEVFGLFQ_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26904296875 2 541.269281 1080.52401 0.25106 0.00013589 2.2069 0.0011945 2.4579 0.0013304 541.2690758815806 95.306 1.2144 91.256 90.744 91.958 -4.0496 63 34 4 0 0 0 0.34411 1 18745 18745 29.082 1.4528 1 2580900 36325 1877 24432 24448 35773 35773 -0.01303133936426093 QNEVFGLFQ 9 Unmodified _QNEVFGLFQ_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2688598632812 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 95.303 1 91.422 90.922 91.922 -3.881 0 0 0 0.07825 1 18287 18287 6.4869 5.6117 1 36326 1877 24432 24448 35774 35774 -0.01303133936426093 QNGLSSPGGP 10 Unmodified _QNGLSSPGGP_ 0 0 0 REV__NLRP12|p.V730*|2|0.38|ENSG00000142405|chr19:53807550-53807550|C/-|frameshift_variant REV__NLRP12|p.V730*|2|0.38|ENSG00000142405|chr19:53807550-53807550|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2240905761719 2 457.222331 912.430109 -0.39757 -0.00018178 0.75912 0.00034709 0.36156 0.00016531 457.2226833148231 17.057 0.66747 15.841 15.423 16.09 -1.2159 49 18 4 0 0 0 0.49999 1 2664 2664 0.84494 0.43668 1 4265300 + 36327 16669 24433 24449 35775 35775 -0.029608530387008614 QNISVIPQSG 10 Unmodified _QNISVIPQSG_ 0 0 0 SPAG5|p.S79Lfs*14|1|0.07|ENSG00000076382|chr17:28593009-28593010|-/AGCAG|frameshift_variant SPAG5|p.S79Lfs*14|1|0.07|ENSG00000076382|chr17:28593009-28593010|-/AGCAG|frameshift_variant SPAG5|p.S79Lfs*14|1|0.07|ENSG00000076382|chr17:28593009-28593010|-/AGCAG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2813720703125 2 521.780013 1041.54547 -0.10259 -5.3529E-05 0.5394 0.00028145 0.43681 0.00022792 521.7801980313048 60.87 0.59794 60.87 60.591 61.189 0 37 16 3 0 0 0 0.51199 1 11664 11664 24.021 1.2843 1 4417100 36328 25774 24434 24450 35776 35776 0.026362510922808724 QNLDPPTPP 9 Unmodified _QNLDPPTPP_ 0 0 0 REV__nc|ENSG00000177426|Q15583-4|TGIF1 REV__nc|ENSG00000177426|Q15583-4|TGIF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2712097167969 2 489.748182 977.481811 0.041866 2.0504E-05 0.12855 6.2957E-05 0.17042 8.3461E-05 489.7484320508247 114.26 0.31938 109.79 109.61 109.93 -4.4726 12 8 2 0 0 0 0.48644 1 22519 22519 20.454 1.0146 1 1222200 + 36329 18556 24435 24451 35777 35777 -0.007831093448203319 QNLFTLLFWKR 11 Unmodified _QNLFTLLFWKR_ 0 0 0 ENST00000367807.7_2_1:169337326-169337413:+|nuORF ENST00000367807.7_2_1:169337326-169337413:+|nuORF ENST00000367807.7_2_1:169337326-169337413:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.2806091308594 3 489.281995 1464.82415 NaN NaN NaN NaN NaN NaN NaN 111.64 1 107.15 106.65 107.65 -4.4915 0 0 0 0.22632 1 21427 21427 0.03141 0 1 36330 9081 24436 24452 35778 35778 0.11033578064962057 QNLLAVES 8 Unmodified _QNLLAVES_ 0 0 0 ENSG00000169410|ENST00000618819|PTPN9 ENSG00000169410|ENST00000618819|PTPN9 ENSG00000169410|ENST00000618819|PTPN9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2362060546875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 68.39 1 68.39 67.89 68.89 0 0 0 0 0.21486 1 13222 13222 8.5933 0 1 36331 5982 24437 24453 35779 35779 0.019015056264720442 QNMENKFPG 9 Unmodified _QNMENKFPG_ 0 0 0 ENST00000422454.5_1_2:191224783-191229864:+|nuORF;ENST00000487628.1_1_2:191224783-191227442:+|nuORF;INPP1|p.G281Vfs*45|1|0.04|ENSG00000151689|chr2:190371034-190371035|-/GT|frameshift_variant;ENSG00000151689|ENST00000392329|INPP1 ENST00000422454.5_1_2:191224783-191229864:+|nuORF ENST00000422454.5_1_2:191224783-191229864:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2835083007812 2 532.745116 1063.47568 0.24622 0.00013117 -2.4438 -0.0013019 -2.1976 -0.0011708 532.7440108627482 61.641 0.5202 58.401 58.103 58.623 -3.2395 19 14 2 0 0 0 0.40602 2 11538 11538;11569 25.399 6.1423 1 1820100 36332 4881 24438 24454 35780;35781 35780 -0.05351950847966691 QNMKAQPAVG 10 Unmodified _QNMKAQPAVG_ 0 0 0 REV__XRN1|p.R91Q|1|0.4|ENSG00000114127|chr3:142432697-142432697|C/T|missense_variant REV__XRN1|p.R91Q|1|0.4|ENSG00000114127|chr3:142432697-142432697|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.27099609375 2 522.268758 1042.52296 -0.17366 -9.0698E-05 3.8645 0.0020183 3.6909 0.0019276 522.771182812167 61.713 0.56444 58.751 58.514 59.078 -2.9614 25 15 2 0 0 0 0.57735 1 11873 11873 20.454 4.6064 1 1486800 + 36333 25549 24439 24455 35782 35782 0.003403284230216741 QNMTQIVLP 9 Unmodified _QNMTQIVLP_ 0 0 0 ENST00000490863.5_1_1:54650890-54651175:-|nuORF ENST00000490863.5_1_1:54650890-54651175:-|nuORF ENST00000490863.5_1_1:54650890-54651175:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2805786132812 2 522.281334 1042.54812 NaN NaN NaN NaN NaN NaN NaN 133.9 1 133.9 133.4 134.4 0 0 0 0 0.22621 1 26496 26496 15.847 0 1 36334 10518 24440 24456 35783 35783 0.028543832255763846 QNPGHRLRT 9 Unmodified _QNPGHRLRT_ 0 0 0 ENST00000305249.9_1_2:75426432-75426564:-|nuORF ENST00000305249.9_1_2:75426432-75426564:-|nuORF ENST00000305249.9_1_2:75426432-75426564:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20220947265625 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 110.29 1 110.29 109.79 110.79 0 0 0 0 0.23508 1 21692 21692 2.7352 0.45242 1 36335 8599 24441 24457 35784 35784 0.04348717374705302 QNPRKPYY 8 Unmodified _QNPRKPYY_ 0 0 0 REV__ENST00000512891.1_1_5:177593058-177593307:+|nuORF REV__ENST00000512891.1_1_5:177593058-177593307:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2755737304688 2 533.277441 1064.54033 NaN NaN NaN NaN NaN NaN NaN 115.6 1 111.02 110.52 111.52 -4.5815 0 0 0 0.2074 1 22193 22193 19.439 3.5918 1 + 36336 22564 24442 24458 35785 35785 0.01063992020317528 QNQAGERL 8 Unmodified _QNQAGERL_ 0 0 0 nc|ENSG00000180638|Q86VL8-6|SLC47A2 nc|ENSG00000180638|Q86VL8-6|SLC47A2 nc|ENSG00000180638|Q86VL8-6|SLC47A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2338562011719 2 458.235773 914.456993 NaN NaN NaN NaN NaN NaN NaN 80.567 1 77.056 76.556 77.556 -3.5107 0 0 0 0.16809 1 15734 15734 26.884 24.252 1 36337 12495 24443 24459 35786 35786 -0.003657444275177113 QNRPELTA 8 Unmodified _QNRPELTA_ 0 0 0 REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2505187988281 2 464.745973 927.477394 0.019217 8.9312E-06 1.5873 0.00073771 1.6066 0.00074664 464.74575053579446 42.233 0.8832 39.627 38.98 39.863 -2.606 51 24 3 0 0 0 8448 1 7484 7484 6.2058 0 1 4717600 + 36338 16613 24444 24460 35787 35787 0.010754262322734576 QNRRTKWRKRH 11 Unmodified _QNRRTKWRKRH_ 0 0 0 ENSG00000148826|ENST00000368592|NKX6-2 ENSG00000148826|ENST00000368592|NKX6-2 ENSG00000148826|ENST00000368592|NKX6-2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2802124023438 3 522.638057 1564.89234 -0.6012 -0.00031421 -2.4349 -0.0012726 -3.0361 -0.0015868 522.6368595675395 138.66 0.24667 133.71 133.57 133.81 -4.952 11 6 2 0 0 0 0.96225 1 26660 26660 0.45452 0.046251 1 1642400 36339 4761 24445 24461 35788 35788 0.13249260488191794 QNSYDCGMY 9 Unmodified _QNSYDCGMY_ 0 0 0 ENSG00000166192|ENST00000340912|SENP8 ENSG00000166192|ENST00000340912|SENP8 ENSG00000166192|ENST00000340912|SENP8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013854980469 3 360.796887 1079.36883 -0.24426 -8.8128E-05 -0.81669 -0.00029466 -1.061 -0.00038279 361.13084120527583 53.512 0.25079 53.512 53.458 53.709 0 8 6 2 0 0 0 0.88433 1 10197 10197 0 0 1 951690 36340 5700 24446 24462 35789 35789 -0.16767869124646495 QNTYNLKDIA 10 Unmodified _QNTYNLKDIA_ 0 0 0 PPP2R3A|p.K245Nfs*6|1|0.18|ENSG00000073711|chr3:136002227-136002227|A/-|frameshift_variant;PPP2R3A|p.V606Qfs*33|1|0.03|ENSG00000073711|chr3:136003314-136003321|GTTGAATG/-|frameshift_variant;ENSG00000073711|ENST00000264977|PPP2R3A PPP2R3A|p.K245Nfs*6|1|0.18|ENSG00000073711|chr3:136002227-136002227|A/-|frameshift_variant PPP2R3A|p.K245Nfs*6|1|0.18|ENSG00000073711|chr3:136002227-136002227|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2569580078125 2 590.303852 1178.59315 0.25489 0.00015046 0.017678 1.0435E-05 0.27257 0.0001609 590.3038479817365 52.983 0.45917 50.1 49.858 50.317 -2.8837 27 12 3 0 0 0 0.4144 1 10086 10086 29.841 3.5724 1 4171300 36341 1486 24447 24463 35790 35790 0.010999052924717034 QNTYNLKDIA 10 Unmodified _QNTYNLKDIA_ 0 0 0 PPP2R3A|p.K245Nfs*6|1|0.18|ENSG00000073711|chr3:136002227-136002227|A/-|frameshift_variant;PPP2R3A|p.V606Qfs*33|1|0.03|ENSG00000073711|chr3:136003314-136003321|GTTGAATG/-|frameshift_variant;ENSG00000073711|ENST00000264977|PPP2R3A PPP2R3A|p.K245Nfs*6|1|0.18|ENSG00000073711|chr3:136002227-136002227|A/-|frameshift_variant PPP2R3A|p.K245Nfs*6|1|0.18|ENSG00000073711|chr3:136002227-136002227|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2587890625 2 590.303852 1178.59315 0.4666 0.00027544 -0.24654 -0.00014553 0.22006 0.0001299 590.3036374253031 53.272 0.42435 50.185 49.932 50.356 -3.0876 28 11 3 0 0 0 0.51622 1 9809 9809 23.79 3.3752 1 4112700 36342 1486 24447 24463 35791 35791 0.010999052924717034 QNTYNLKDIA 10 Unmodified _QNTYNLKDIA_ 0 0 0 PPP2R3A|p.K245Nfs*6|1|0.18|ENSG00000073711|chr3:136002227-136002227|A/-|frameshift_variant;PPP2R3A|p.V606Qfs*33|1|0.03|ENSG00000073711|chr3:136003314-136003321|GTTGAATG/-|frameshift_variant;ENSG00000073711|ENST00000264977|PPP2R3A PPP2R3A|p.K245Nfs*6|1|0.18|ENSG00000073711|chr3:136002227-136002227|A/-|frameshift_variant PPP2R3A|p.K245Nfs*6|1|0.18|ENSG00000073711|chr3:136002227-136002227|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 590.303852 1178.59315 -0.036681 -2.1653E-05 0.51206 0.00030227 0.47538 0.00028062 590.3040167028013 53.211 0.47424 50.116 49.865 50.339 -3.0954 -0.017439 0.00049428 NaN 29.841 33 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2826100 36343 1486 24447 24463 0.010999052924717034 QNVFEHDSVE 10 Unmodified _QNVFEHDSVE_ 0 0 0 ESD|p.K17N|1|0.07|ENSG00000139684|chr13:46791363-46791363|T/G|missense_variant ESD|p.K17N|1|0.07|ENSG00000139684|chr13:46791363-46791363|T/G|missense_variant ESD|p.K17N|1|0.07|ENSG00000139684|chr13:46791363-46791363|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2872314453125 2 602.267467 1202.52038 NaN NaN NaN NaN NaN NaN NaN 156.62 1 151.33 150.83 151.83 -5.2854 0 0 0 2.8426 1 30385 30385 0.063865 0 1 36344 11784 24448 24464 35792 35792 -0.07277848500939399 QNVFEHDSVE 10 Unmodified _QNVFEHDSVE_ 0 0 0 ESD|p.K17N|1|0.07|ENSG00000139684|chr13:46791363-46791363|T/G|missense_variant ESD|p.K17N|1|0.07|ENSG00000139684|chr13:46791363-46791363|T/G|missense_variant ESD|p.K17N|1|0.07|ENSG00000139684|chr13:46791363-46791363|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2872314453125 2 602.267467 1202.52038 NaN NaN NaN NaN NaN NaN NaN 156.63 1 151.34 150.84 151.84 -5.2854 0 0 0 0.22583 1 30387 30387 13.906 5.3128 1 36345 11784 24448 24464 35793 35793 -0.07277848500939399 QNVLRSEKET 10 Unmodified _QNVLRSEKET_ 0 0 0 nc|ENSG00000077157|O60237-2|PPP1R12B;nc|ENSG00000077157|O60237-5|PPP1R12B;PPP1R12B|p.N573Rfs*12|1|0.05|ENSG00000077157|chr1:202449038-202449039|-/GAAGG|frameshift_variant;ENSG00000077157|ENST00000608999|PPP1R12B;nc|ENSG00000077157|O60237-6|PPP1R12B nc|ENSG00000077157|O60237-2|PPP1R12B nc|ENSG00000077157|O60237-2|PPP1R12B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.27880859375 2 602.320034 1202.62551 0.39531 0.00023811 2.152 0.0012962 2.5473 0.0015343 602.3208601553307 150.76 0.42487 150.76 150.49 150.92 0 16 11 2 0 0 0 0.51199 1 30154 30154 24.021 3.606 1 3363700 36346 1554 24449 24465 35794 35794 0.03230692695478865 QNYGEIPVQ 9 Unmodified _QNYGEIPVQ_ 0 0 0 SPECC1L|p.P906Q|1|0.1|ENSG00000100014|chr22:24347150-24347150|C/A|missense_variant SPECC1L|p.P906Q|1|0.1|ENSG00000100014|chr22:24347150-24347150|C/A|missense_variant SPECC1L|p.P906Q|1|0.1|ENSG00000100014|chr22:24347150-24347150|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6896362304688 2 524.258914 1046.50327 0.25147 0.00013183 0.72238 0.00037871 0.97385 0.00051055 524.259225502377 61.816 0.61958 58.577 58.24 58.86 -3.2395 23 17 2 0 0 0 0.76271 1 11529 11529 14.838 7.549 1 907950 36347 25780 24450 24466 35795 35795 -0.018117243160986618 QNYIHIKY 8 Unmodified _QNYIHIKY_ 0 0 0 ENST00000360150.8_1_12:29498386-29498443:-|nuORF ENST00000360150.8_1_12:29498386-29498443:-|nuORF ENST00000360150.8_1_12:29498386-29498443:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2010498046875 3 360.194186 1077.56073 -0.0012412 -4.4709E-07 -4.2702 -0.0015381 -4.2715 -0.0015386 360.52633837570113 43.098 0.16813 43.098 42.987 43.155 0 7 4 2 0 0 0 0.75713 1 8056 8056 6.2058 1.3088 1 305370 36348 9011 24451 24467 35796 35796 0.02505162680131434 QPAAGSRY 8 Unmodified _QPAAGSRY_ 0 0 0 REV__nc|ENSG00000011422|Q03405-3|PLAUR REV__nc|ENSG00000011422|Q03405-3|PLAUR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24359130859375 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 109.72 1 105.27 104.77 105.77 -4.4518 0 0 0 0.21486 1 21058 21058 7.9102 0.62092 1 + 36349 13935 24452 24468 35797 35797 -0.016205144849664066 QPAEPPPPP 9 Unmodified _QPAEPPPPP_ 0 0 0 REV__VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant REV__VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2396545410156 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 36.362 1 36.362 35.862 36.862 0 0 0 0 0.081239 1 6700 6700 41.84 3.8656 1 + 36350 18450 24453 24469 35798 35798 -0.0016619051091311121 QPAEPPPPP 9 Unmodified _QPAEPPPPP_ 0 0 0 REV__VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant REV__VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2398681640625 2 465.239993 928.465432 0.26968 0.00012546 -0.38044 -0.000177 -0.11077 -5.1533E-05 465.2395926826212 36.067 5.1361 33.79 32.726 37.862 -2.2766 248 146 3 0 0 0 0.09143 1 6971 6971 58.679 2.5018 1 7106700 + 36351 18450 24453 24469 35799 35799 -0.0016619051091311121 QPAKPQQVIQH 11 Unmodified _QPAKPQQVIQH_ 0 0 0 ENSG00000141867|ENST00000679869|BRD4 ENSG00000141867|ENST00000679869|BRD4 ENSG00000141867|ENST00000679869|BRD4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2403564453125 3 425.238566 1272.69387 NaN NaN NaN NaN NaN NaN NaN 165.25 1 165.25 164.75 165.75 0 0 0 0 0.22632 1 33513 33513 0.2986 0.1266 1 36352 4398 24454 24470 35800 35800 0.06842982065995784 QPAKYLYWL 9 Unmodified _QPAKYLYWL_ 0 0 0 REV__ENSG00000206579|ENST00000327381|XKR4 REV__ENSG00000206579|ENST00000327381|XKR4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 394.2216796875 3 394.54997 1180.62808 0.26025 0.00010268 -0.69769 -0.00027527 -0.43744 -0.00017259 394.54953725318853 48.118 0.38581 48.118 47.823 48.209 0 13 10 2 0 0 0 0.8825 1 9031 9031 1.0715 0 1 661400 + 36353 19626 24455 24471 35801 35801 0.04499192891103121 QPAKYLYWL 9 Unmodified _QPAKYLYWL_ 0 0 0 REV__ENSG00000206579|ENST00000327381|XKR4 REV__ENSG00000206579|ENST00000327381|XKR4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 394.54997 1180.62808 -0.35405 -0.00013969 0.22037 8.6948E-05 -0.13368 -5.2744E-05 394.55006759399527 50.928 0.45911 48.045 47.786 48.245 -2.8824 -0.0084075 0.00052145 NaN 1.0715 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 763110 + 36354 19626 24455 24471 0.04499192891103121 QPAKYLYWL 9 Unmodified _QPAKYLYWL_ 0 0 0 REV__ENSG00000206579|ENST00000327381|XKR4 REV__ENSG00000206579|ENST00000327381|XKR4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 394.54997 1180.62808 -0.65015 -0.00025652 -1.2398 -0.00048918 -1.89 -0.0007457 394.5498282743547 51.05 0.45731 47.998 47.748 48.206 -3.0517 -0.055715 -0.0012069 NaN 1.0715 21 12 3 NaN NaN NaN NaN 0 NaN NaN 0 807880 + 36355 19626 24455 24471 0.04499192891103121 QPAPRREEV 9 Unmodified _QPAPRREEV_ 0 0 0 ENST00000371341.5_2_1:54519039-54519174:-|nuORF ENST00000371341.5_2_1:54519039-54519174:-|nuORF ENST00000371341.5_2_1:54519039-54519174:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2716674804688 2 541.291079 1080.56761 -0.44494 -0.00024084 0.59389 0.00032147 0.14895 8.0626E-05 541.2913937636608 13.898 0.24747 12.784 12.663 12.911 -1.1142 14 6 3 0 0 0 0.75884 1 2065 2065 3.5965 0.60125 1 3999600 36356 9157 24456 24472 35802 35802 0.030544755607024854 QPARLYRLY 9 Unmodified _QPARLYRLY_ 0 0 0 REV__ENST00000479818.5_1_22:50714048-50714111:-|nuORF REV__ENST00000479818.5_1_22:50714048-50714111:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2645874023438 2 590.33529 1178.65603 NaN NaN NaN NaN NaN NaN NaN 45.382 1 42.516 42.016 43.016 -2.8653 0 0 0 0.23508 1 8235 8235 4.3292 0.38484 1 + 36357 22157 24457 24473 35803 35803 0.0738451587117197 QPAYRILKP 9 Unmodified _QPAYRILKP_ 0 0 0 ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7913208007812 2 543.326934 1084.63931 0.052198 2.836E-05 4.0396 0.0021948 4.0918 0.0022232 543.8314671851064 131.54 0.13383 126.69 126.6 126.74 -4.8527 6 3 2 0 0 0 0.67531 1 25252 25252 7.9102 0.62092 1 730360 36358 4037 24458 24474 35804 35804 0.10038014985207155 QPCSIHEWFN 10 Unmodified _QPCSIHEWFN_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7750854492188 2 630.776948 1259.53934 NaN NaN NaN NaN NaN NaN NaN 15.763 1 14.541 14.041 15.041 -1.2219 0 0 0 0.22588 1 2230 2230 3.5965 0 1 + 36359 13287 24459 24475 35805 35805 -0.08004590410882884 QPCSIHEWFN 10 Unmodified _QPCSIHEWFN_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.776611328125 2 630.776948 1259.53934 NaN NaN NaN NaN NaN NaN NaN 22.832 1 21.379 20.879 21.879 -1.4535 0 0 0 0.22588 1 3657 3657 3.5965 0.31518 1 + 36360 13287 24459 24475 35806 35806 -0.08004590410882884 QPDDPESQM 9 Unmodified _QPDDPESQM_ 0 0 0 nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4;TBC1D4|p.F159Sfs*16|1|0.14|ENSG00000136111|chr13:75481292-75481292|A/-|frameshift_variant;TBC1D4|p.S219Qfs*19|1|0.23|ENSG00000136111|chr13:75362452-75362452|G/-|frameshift_variant;TBC1D4|p.H517Pfs*9|1|0.07|ENSG00000136111|chr13:75341186-75341187|-/TCTTTAG|frameshift_variant nc|ENSG00000136111|O60343-2|TBC1D4 nc|ENSG00000136111|O60343-2|TBC1D4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6958618164062 2 523.708396 1045.40224 NaN NaN NaN NaN NaN NaN NaN 148.88 1 143.82 143.32 144.32 -5.0595 0 0 0 0.23508 1 28842 28842 4.3292 0.38484 1 36361 3983 24460 24476 35807 35807 -0.11864544081117856 QPDEEEEEEEE 11 Unmodified _QPDEEEEEEEE_ 0 0 0 TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant;ENSG00000166848|ENST00000300086|TERF2IP TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 696.2523193359375 2 696.252073 1390.48959 NaN NaN NaN NaN NaN NaN NaN 166.63 1 161.64 161.14 162.14 -4.9811 0 0 0 0.23698 1 32684 32684 2.7352 0.23671 1 36362 5754 24461 24477 35808 35808 -0.19003136187166092 QPDSFSTAHG 10 Unmodified _QPDSFSTAHG_ 0 0 0 nc|ENSG00000104728|O15013-7|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ENST00000523711.5_1_8:1824717-1874701:+|nuORF;ARHGEF10|p.P976Rfs*8|1|0.14|ENSG00000104728|chr8:1928577-1928577|C/-|frameshift_variant;ARHGEF10|p.E997Gfs*16|1|0.43|ENSG00000104728|chr8:1928644-1928644|A/-|frameshift_variant nc|ENSG00000104728|O15013-7|ARHGEF10 nc|ENSG00000104728|O15013-7|ARHGEF10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6854248046875 2 523.73052 1045.44649 NaN NaN NaN NaN NaN NaN NaN 136.22 1 131.58 131.08 132.08 -4.6399 0 0 0 0.22588 1 26877 26877 8.7454 0.15213 1 36363 2249 24462 24478 35809 35809 -0.07441771872618119 QPDSGTPTL 9 Unmodified _QPDSGTPTL_ 0 0 0 REV__ENST00000462628.5_1_19:55144679-55146115:+|nuORF REV__ENST00000462628.5_1_19:55144679-55146115:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22393798828125 2 458.224539 914.434526 0.0031988 1.4658E-06 0.23401 0.00010723 0.23721 0.0001087 458.224614042524 53.741 0.66636 50.653 50.321 50.988 -3.0876 33 18 2 0 0 0 0.42842 1 9851 9851 1.6919 0 1 4778800 + 36364 14957 24463 24479 35810 35810 -0.026113886158100286 QPEDDADYY 9 Unmodified _QPEDDADYY_ 0 0 0 ENSG00000128218|ENST00000248948|VPREB3 ENSG00000128218|ENST00000248948|VPREB3 ENSG00000128218|ENST00000248948|VPREB3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 558.2130126953125 2 558.211826 1114.4091 NaN NaN NaN NaN NaN NaN NaN 166.52 1 161.73 161.23 162.23 -4.7898 0 0 0 0.23508 1 33468 33468 7.2892 0.56607 1 36365 3512 24464 24480 35811 35811 -0.14352907928901004 QPEDWTSLDGP 11 Unmodified _QPEDWTSLDGP_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000527653.1_1_8:145139258-145139832:+|nuORF;ENST00000529638.1_1_8:145139098-145139832:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7733154296875 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 31.575 1 29.549 29.049 30.049 -2.0264 0 0 0 0.23634 1 5454 5454 3.2813 0.28607 1 36366 7405 24465 24481 35812 35812 -0.07632981703773112 QPEPGLGDRP 10 Unmodified _QPEPGLGDRP_ 0 0 0 REV__ENSG00000179588|ENST00000319555|ZFPM1 REV__ENSG00000179588|ENST00000319555|ZFPM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2702026367188 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 18.68 1 18.68 18.18 19.18 0 0 0 0 2.8426 1 3019 3019 0.84494 0 1 + 36367 18661 24466 24482 35813 35813 -0.004609195675357114 QPERKEQQDS 10 Unmodified _QPERKEQQDS_ 0 0 0 CON__P28800 CON__P28800 CON__P28800 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7518310546875 2 622.796923 1243.57929 NaN NaN NaN NaN NaN NaN NaN 150.32 1 145.12 144.62 145.62 -5.1994 0 0 0 0.22588 1 29127 29127 6.2058 0.47393 1 + 36368 669 24467 24483 35814 35814 -0.03275372206621796 QPERLVPV 8 Unmodified _QPERLVPV_ 0 0 0 ENSG00000124217|ENST00000244051|MOCS3 ENSG00000124217|ENST00000244051|MOCS3 ENSG00000124217|ENST00000244051|MOCS3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1623840332031 3 313.187032 936.539266 -0.22676 -7.1017E-05 0.26514 8.3038E-05 0.038381 1.2021E-05 313.18706049156594 32.256 0.72836 30.108 29.759 30.487 -2.1483 46 20 3 0 0 0 1.0277 1 5649 5649 0 0 1 9087900 36369 3303 24468 24484 35815 35815 0.06845777651415119 QPESWQDSAR 10 Unmodified _QPESWQDSAR_ 0 0 0 nc|ENSG00000052795|Q9P278-2|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2869873046875 2 602.273084 1202.53161 NaN NaN NaN NaN NaN NaN NaN 144.38 1 139.31 138.81 139.81 -5.0671 0 0 0 0.22588 1 27853 27853 8.1555 0.54658 1 36370 12217 24469 24485 35816 35816 -0.06155026406804609 QPEYTLNP 8 Unmodified _QPEYTLNP_ 0 0 0 REV__nc|ENSG00000104067|Q07157-2|TJP1 REV__nc|ENSG00000104067|Q07157-2|TJP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2367248535156 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 31.715 1 29.688 29.188 30.188 -2.0264 0 0 0 0.21039 1 5482 5482 16.942 1.0951 1 + 36371 14903 24470 24486 35817 35817 -0.02654798236130773 QPFFYLFNQ 9 Unmodified _QPFFYLFNQ_ 0 0 0 ENST00000263856.8_1_2:86732031-86732436:-|nuORF ENST00000263856.8_1_2:86732031-86732436:-|nuORF ENST00000263856.8_1_2:86732031-86732436:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2723999023438 2 602.295299 1202.57605 NaN NaN NaN NaN NaN NaN NaN 130.93 1 130.93 130.43 131.43 0 0 0 0 0.23508 1 25886 25886 10.824 1.4408 1 36372 8329 24471 24487 35818 35818 -0.017139705226554725 QPFGLFNTGT 10 Unmodified _QPFGLFNTGT_ 0 0 0 DSC1|p.N542Kfs*28|1|0.32|ENSG00000134765|chr18:31139785-31139786|-/T|frameshift_variant;nc|ENSG00000134765|Q08554-2|DSC1;ENSG00000134765|ENST00000257198|DSC1 DSC1|p.N542Kfs*28|1|0.32|ENSG00000134765|chr18:31139785-31139786|-/T|frameshift_variant DSC1|p.N542Kfs*28|1|0.32|ENSG00000134765|chr18:31139785-31139786|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2677612304688 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 18.691 1 18.691 18.191 19.191 0 0 0 0 0.22588 1 3021 3021 9.3831 0.78985 1 36373 891 24472 24488 35819 35819 -0.01303133936426093 QPFQKHVY 8 Unmodified _QPFQKHVY_ 0 0 0 nc|ENSG00000134874|Q86YF9-3|DZIP1 nc|ENSG00000134874|Q86YF9-3|DZIP1 nc|ENSG00000134874|Q86YF9-3|DZIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6865234375 2 523.774534 1045.53451 -0.037083 -1.9423E-05 -0.095892 -5.0226E-05 -0.13298 -6.9649E-05 523.7744733001964 118.89 0.67523 114.28 113.96 114.64 -4.6106 26 18 3 0 0 0 0.9455 1 22842 22842 16.942 0 1 1612700 36374 12338 24473 24489 35820 35820 0.01356893508682333 QPFVQSKK 8 Unmodified _QPFVQSKK_ 0 0 0 REV__ENST00000361028.5_1_6:28350065-28350296:-|nuORF REV__ENST00000361028.5_1_6:28350065-28350296:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7787780761719 2 481.276909 960.539266 -0.24277 -0.00011684 0.50743 0.00024421 0.26466 0.00012737 481.277128205733 57.277 1.9408 57.277 56.536 58.477 0 96 55 2 0 0 0 8448 1 11130 11130 10.074 0 1 1919100 + 36375 20876 24474 24490 35821 35821 0.057417776514284924 QPFVSVEIY 9 Unmodified _QPFVSVEIY_ 0 0 0 REV__ENST00000465552.1_1_3:41277978-41278230:+|nuORF REV__ENST00000465552.1_1_3:41277978-41278230:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.280517578125 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 60.834 1 57.901 57.401 58.401 -2.9333 0 0 0 0.19721 1 11714 11714 24.021 4.7636 1 + 36376 21951 24475 24491 35822 35822 0.012109208661513549 QPFYVPFF 8 Unmodified _QPFYVPFF_ 0 0 0 ENSG00000167619|ENST00000301204|TMEM145 ENSG00000167619|ENST00000301204|TMEM145 ENSG00000167619|ENST00000301204|TMEM145 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2824096679688 2 522.763104 1043.51165 0.31849 0.00016649 -1.8432 -0.00096357 -1.5247 -0.00079707 522.7617336413874 140.67 0.14072 135.81 135.74 135.88 -4.8678 5 3 2 0 0 0 1.0095 1 27121 27121 2.5775 0 1 5773700 36377 5822 24476 24492 35823 35823 -0.008361256088164737 QPGAAELEG 9 Unmodified _QPGAAELEG_ 0 0 0 ENST00000587912.1_1_19:3721709-3721835:+|nuORF ENST00000587912.1_1_19:3721709-3721835:+|nuORF ENST00000587912.1_1_19:3721709-3721835:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2145080566406 2 436.211432 870.408311 0.17594 7.6746E-05 -0.094679 -4.13E-05 0.08126 3.5447E-05 436.211318491775 31.829 0.6956 31.829 31.386 32.082 0 38 19 3 0 0 0 0.6329 1 5759 5759 10.824 0.64053 1 1247300 36378 11566 24477 24493 35824 35824 -0.03207657787288554 QPGEKLYK 8 Unmodified _QPGEKLYK_ 0 0 0 ZNF333|p.Q441Ifs*32|1|0.1|ENSG00000160961|chr19:14718647-14718648|-/ATTTGTTA|frameshift_variant;ENSG00000160961|ENST00000292530|ZNF333 ZNF333|p.Q441Ifs*32|1|0.1|ENSG00000160961|chr19:14718647-14718648|-/ATTTGTTA|frameshift_variant ZNF333|p.Q441Ifs*32|1|0.1|ENSG00000160961|chr19:14718647-14718648|-/ATTTGTTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7682800292969 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 12.7 1 12.7 12.2 13.2 0 0 0 0 0.21486 1 1788 1788 2.3027 0 1 36379 5278 24478 24494 35825 35825 0.04098071414500737 QPGERGLPPD 10 Unmodified _QPGERGLPPD_ 0 0 0 GAS6|p.R151Pfs*27|1|0.41|ENSG00000183087|chr13:113839744-113839745|-/C|frameshift_variant GAS6|p.R151Pfs*27|1|0.41|ENSG00000183087|chr13:113839744-113839745|-/C|frameshift_variant GAS6|p.R151Pfs*27|1|0.41|ENSG00000183087|chr13:113839744-113839745|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2704467773438 2 533.269813 1064.52507 0.1038 5.5353E-05 -2.0308 -0.0010829 -1.927 -0.0010276 533.7697506293931 122.35 0.64645 122.35 121.93 122.57 0 37 18 3 0 0 0 0.13997 1 24146 24146 3.5927 0 1 3329000 36380 11839 24479 24495 35826 35826 -0.004609195675357114 QPGFLFPFSY 10 Unmodified _QPGFLFPFSY_ 0 0 0 REV__ENST00000397501.5_1_8:27316022-27316487:+|nuORF REV__ENST00000397501.5_1_8:27316022-27316487:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2965087890625 2 601.797675 1201.5808 0.43349 0.00026088 1.4342 0.00086311 1.8677 0.001124 602.2986978196219 140.83 0.17838 135.85 135.78 135.96 -4.9877 6 4 2 0 0 0 0.90091 1 27133 27133 3.2813 0 1 1425000 + 36381 21308 24480 24496 35827 35827 -0.011930863798852442 QPGFPFPGLPF 11 Unmodified _QPGFPFPGLPF_ 0 0 0 REV__ENST00000471480.6_1_22:30682838-30683547:-|nuORF REV__ENST00000471480.6_1_22:30682838-30683547:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2832641601562 2 602.313492 1202.61243 NaN NaN NaN NaN NaN NaN NaN 82.481 1 82.481 81.981 82.981 0 0 0 0 0.23429 1 16070 16070 4.897 0 1 + 36382 22040 24481 24497 35828 35828 0.01922906374034028 QPGHACPFPHL 11 Unmodified _QPGHACPFPHL_ 0 0 0 ENST00000573956.1_1_17:79857674-79857938:+|nuORF ENST00000573956.1_1_17:79857674-79857938:+|nuORF ENST00000573956.1_1_17:79857674-79857938:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2883911132812 2 602.290025 1202.5655 NaN NaN NaN NaN NaN NaN NaN 114.96 1 110.65 110.15 111.15 -4.3136 0 0 0 0.22632 1 22134 22134 0.03141 0.018144 1 36383 11442 24482 24498 35829 35829 -0.027682764487508393 QPGQSLSGPG 10 Unmodified _QPGQSLSGPG_ 0 0 0 REV__ENST00000355530.6_1_17:4389827-4391457:+|nuORF REV__ENST00000355530.6_1_17:4389827-4391457:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2363586425781 2 464.230156 926.445759 0.044877 2.0833E-05 0.99538 0.00046208 1.0403 0.00048292 464.23009779542554 15.297 0.52395 15.297 14.914 15.438 0 34 14 3 0 0 0 0.70357 1 2281 2281 10.824 0.75 1 1310100 + 36384 20794 24483 24499 35830 35830 -0.02040566521668552 QPGRCPMLLH 10 Unmodified _QPGRCPMLLH_ 0 0 0 ENST00000475815.5_1_2:36783274-36783475:-|nuORF ENST00000475815.5_1_2:36783274-36783475:-|nuORF ENST00000475815.5_1_2:36783274-36783475:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3167114257812 2 576.294253 1150.57395 -0.40196 -0.00023165 0.15685 9.0394E-05 -0.24511 -0.00014125 576.2944650962845 16.417 0.27213 15.195 15.024 15.296 -1.2219 18 7 3 0 0 0 0.75676 1 2341 2341 3.5965 0.8613 1 1924900 36385 10276 24484 24500 35831 35831 0.004689541962306976 QPGRCPMLLH 10 Unmodified _QPGRCPMLLH_ 0 0 0 ENST00000475815.5_1_2:36783274-36783475:-|nuORF ENST00000475815.5_1_2:36783274-36783475:-|nuORF ENST00000475815.5_1_2:36783274-36783475:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.294253 1150.57395 0.19451 0.00011209 -0.4987 -0.0002874 -0.30419 -0.0001753 576.2940040244953 15.312 0.27703 15.312 15.161 15.438 0 0.086798 -0.00042689 NaN 3.5965 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 3691300 36386 10276 24484 24500 0.004689541962306976 QPGRCPMLLH 10 Unmodified _QPGRCPMLLH_ 0 0 0 ENST00000475815.5_1_2:36783274-36783475:-|nuORF ENST00000475815.5_1_2:36783274-36783475:-|nuORF ENST00000475815.5_1_2:36783274-36783475:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 576.294253 1150.57395 -0.39333 -0.00022668 0.050992 2.9387E-05 -0.34234 -0.00019729 576.294232320843 16.384 0.31062 15.169 14.974 15.285 -1.2159 -0.056824 0.00020667 NaN 3.5965 20 8 4 NaN NaN NaN NaN 0 NaN NaN 0 3170100 36387 10276 24484 24500 0.004689541962306976 QPGRGRRQS 9 Unmodified _QPGRGRRQS_ 0 0 0 REV__ENST00000465814.5_1_11:72424231-72425304:-|nuORF REV__ENST00000465814.5_1_11:72424231-72425304:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2593383789062 2 521.286663 1040.55877 0.71418 0.00037229 1.6577 0.00086415 2.3719 0.0012364 521.287747678816 24.19 0.42475 22.637 22.425 22.85 -1.5532 25 11 3 0 0 0 0.75884 1 4161 4161 3.5965 0.31518 1 734690 + 36388 21959 24485 24501 35832 35832 0.040115467148780226 QPGRGRRQS 9 Unmodified _QPGRGRRQS_ 0 0 0 REV__ENST00000465814.5_1_11:72424231-72425304:-|nuORF REV__ENST00000465814.5_1_11:72424231-72425304:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.286663 1040.55877 0.71418 0.00037229 1.6577 0.00086415 2.3719 0.0012364 521.287747678816 24.19 0.42475 22.637 22.425 22.85 -1.5532 0 0 NaN 3.5965 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 734690 + 36389 21959 24485 24501 0.040115467148780226 QPHDSPSLL 9 Unmodified _QPHDSPSLL_ 0 0 0 nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.00537109375 3 331.83818 992.49271 -0.25835 -8.5729E-05 0.29933 9.933E-05 0.040985 1.36E-05 331.83819127488107 40.59 0.52698 40.59 40.462 40.989 0 22 14 2 0 0 0 0.88425 1 7631 7631 0.20686 0.047535 1 1835000 36390 5876 24486 24502 35833 35833 -0.003837069705241447 QPHDSPSLL 9 Unmodified _QPHDSPSLL_ 0 0 0 nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 331.83818 992.49271 -0.36986 -0.00012273 0.23502 7.7987E-05 -0.13484 -4.4745E-05 331.83823353675075 43.316 0.53767 40.597 40.374 40.912 -2.7191 0.04031 -6.3196E-05 NaN 0.20686 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4648600 36391 5876 24486 24502 -0.003837069705241447 QPHDSPSLL 9 Unmodified _QPHDSPSLL_ 0 0 0 nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 331.83818 992.49271 -0.044041 -1.4614E-05 -0.058529 -1.9422E-05 -0.10257 -3.4037E-05 331.838147697993 43.249 0.47359 40.483 40.248 40.722 -2.7661 -0.07332 -0.00035543 NaN 0.20686 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3616900 36392 5876 24486 24502 -0.003837069705241447 QPHKSFYH 8 Unmodified _QPHKSFYH_ 0 0 0 REV__nc|ENSG00000102385|Q13474-2|DRP2 REV__nc|ENSG00000102385|Q13474-2|DRP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2587280273438 2 522.256508 1042.49846 NaN NaN NaN NaN NaN NaN NaN 81.006 1 77.449 76.949 77.949 -3.557 0 0 0 0.21404 1 15817 15817 13.906 2.2658 1 + 36393 14837 24487 24503 35834 35834 -0.021085636682073527 QPHPGDIFPA 10 Unmodified _QPHPGDIFPA_ 0 0 0 ENST00000496385.5_1_22:26849136-26861668:-|nuORF ENST00000496385.5_1_22:26849136-26861668:-|nuORF ENST00000496385.5_1_22:26849136-26861668:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2732543945312 2 539.769448 1077.52434 0.1526 8.2369E-05 -0.13122 -7.083E-05 0.021378 1.1539E-05 539.7693665457531 67.217 0.83511 64.108 63.756 64.591 -3.1086 66 23 4 0 0 0 0.70283 1 13009 13009 12.241 6.5088 1 34137000 36394 10576 24488 24504 35835 35835 -0.011317142165808036 QPHQQNKWAT 10 Unmodified _QPHQQNKWAT_ 0 0 0 nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF;MYRF|p.K745Rfs*45|1|0.07|ENSG00000124920|chr11:61779550-61779550|C/-|frameshift_variant;MYRF|p.S823Vfs*22|1|0.07|ENSG00000124920|chr11:61780767-61780767|G/-|frameshift_variant nc|ENSG00000124920|Q9Y2G1-2|MYRF nc|ENSG00000124920|Q9Y2G1-2|MYRF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 619.1785888671875 2 619.307261 1236.59997 NaN NaN NaN NaN NaN NaN NaN 174.48 1 169.69 169.19 170.19 -4.7898 0 0 0 0.22588 1 35647 35647 5.7319 0.43497 1 36395 3338 24489 24505 35836 35836 -0.008867370363077498 QPHQRASVR 9 Unmodified _QPHQRASVR_ 0 0 0 REV__ENST00000562067.5_1_15:75648526-75649181:-|nuORF REV__ENST00000562067.5_1_15:75648526-75649181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013854980469 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 83.584 1 79.976 79.476 80.476 -3.6079 0 0 0 0.23508 1 16340 16340 8.9762 1.3673 1 + 36396 23062 24490 24506 35837 35837 0.04348717374705302 QPIIIKRKR 9 Unmodified _QPIIIKRKR_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3265991210938 2 576.3904 1150.76625 NaN NaN NaN NaN NaN NaN NaN 138.2 1 133.36 132.86 133.86 -4.84 0 0 0 0.19626 1 26632 26632 0.0033805 0 1 36397 1180 24491 24507 35838 35838 0.19689360930215116 QPIMYCQP 8 Unmodified _QPIMYCQP_ 0 0 0 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant;ENSG00000112787|ENST00000680143|FBRSL1 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2707824707031 2 490.222431 978.430309 NaN NaN NaN NaN NaN NaN NaN 139.22 1 139.22 138.72 139.72 0 0 0 0 0.21486 1 27668 27668 8.5933 1.8701 1 36398 2712 24492 24508 35839 35839 -0.059768926347260276 QPIRYNQY 8 Unmodified _QPIRYNQY_ 0 0 0 REV__ENST00000482397.1_1_7:50672830-50674105:-|nuORF REV__ENST00000482397.1_1_7:50672830-50674105:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2785034179688 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 142.54 1 142.54 142.04 143.04 0 0 0 0 0.21486 1 28419 28419 8.5933 0.68312 1 + 36399 15031 24493 24509 35840 35840 -0.001803118423140404 QPKLLLTLS 9 Unmodified _QPKLLLTLS_ 0 0 0 JAZF1|p.S85L|1|0.23|ENSG00000153814|chr7:27895351-27895351|G/A|missense_variant JAZF1|p.S85L|1|0.23|ENSG00000153814|chr7:27895351-27895351|G/A|missense_variant JAZF1|p.S85L|1|0.23|ENSG00000153814|chr7:27895351-27895351|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.2176513671875 3 338.21822 1011.63283 NaN NaN NaN NaN NaN NaN NaN 103.32 1 103.32 102.82 103.82 0 0 0 0 0.23508 1 20301 20301 1.0715 0 1 36400 11970 24494 24510 35841 35841 0.1274807703384795 QPKLRPRPRL 10 Unmodified _QPKLRPRPRL_ 0 0 0 REV__ENSG00000170260|ENST00000335870|ZNF212 REV__ENSG00000170260|ENST00000335870|ZNF212 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.766357421875 2 630.904205 1259.79386 NaN NaN NaN NaN NaN NaN NaN 34.59 1 34.59 34.09 35.09 0 0 0 0 0.22588 1 6334 6334 1.4819 0 1 + 36401 18149 24495 24511 35842 35842 0.1743526419045338 QPKLWLCEY 9 Unmodified _QPKLWLCEY_ 0 0 0 ENST00000538768.2_1_16:31138259-31142577:+|nuORF;KAT8|p.Y323Tfs*48|1|0.44|ENSG00000103510|chr16:31130315-31130315|C/-|frameshift_variant;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8 ENST00000538768.2_1_16:31138259-31142577:+|nuORF ENST00000538768.2_1_16:31138259-31142577:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.277099609375 2 590.296985 1178.57942 NaN NaN NaN NaN NaN NaN NaN 142.88 1 137.85 137.35 138.35 -5.0261 0 0 0 0.23508 1 27545 27545 7.9102 0 1 36402 2195 24496 24512 35843 35843 -0.002730437402988173 QPKPAKRA 8 Unmodified _QPKPAKRA_ 0 0 0 nc|ENSG00000106852|Q9UPM6-6|LHX6;nc|ENSG00000106852|Q9UPM6-2|LHX6;nc|ENSG00000106852|Q9UPM6|LHX6;nc|ENSG00000106852|Q9UPM6-5|LHX6;nc|ENSG00000106852|Q9UPM6-4|LHX6;ENSG00000106852|ENST00000394319|LHX6 nc|ENSG00000106852|Q9UPM6-6|LHX6 nc|ENSG00000106852|Q9UPM6-6|LHX6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 448.3506774902344 2 448.277244 894.539935 NaN NaN NaN NaN NaN NaN NaN 55.291 1 52.156 51.656 52.656 -3.1352 0 0 0 0.21486 1 10215 10215 2.3027 0 1 36403 2407 24497 24513 35844 35844 0.08844617091131113 QPKPKIKRA 9 Unmodified _QPKPKIKRA_ 0 0 0 REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2872924804688 2 533.3482 1064.68185 NaN NaN NaN NaN NaN NaN NaN 140.61 1 135.74 135.24 136.24 -4.8678 0 0 0 0.23508 1 27113 27113 4.3292 0 1 + 36404 14073 24498 24514 35845 35845 0.15209410113470767 QPKTMYQIRRY 11 Unmodified _QPKTMYQIRRY_ 0 0 0 REV__ENST00000548860.5_1_12:49210766-49210967:+|nuORF REV__ENST00000548860.5_1_12:49210766-49210967:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3954467773438 2 742.395553 1482.77655 NaN NaN NaN NaN NaN NaN NaN 156.38 1 156.38 155.88 156.88 0 0 0 0 0.2367 1 31372 31372 2.9952 0.26005 1 + 36405 22913 24499 24515 35846 35846 0.054475558024705606 QPLAFRHH 8 Unmodified _QPLAFRHH_ 0 0 0 ENST00000373237.3_1_1:36102029-36107091:-|nuORF ENST00000373237.3_1_1:36102029-36107091:-|nuORF ENST00000373237.3_1_1:36102029-36107091:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.0596618652344 3 335.850754 1004.53043 -1.0017 -0.00033642 -0.26067 -8.7546E-05 -1.2624 -0.00042397 335.8506469334587 24.252 0.93226 22.398 21.812 22.744 -1.8534 43 26 2 0 0 0 1.0265 1 3984 3984 0 0 1 749300 36406 9193 24500 24516 35847 35847 0.02834848805605361 QPLDCDDIY 9 Unmodified _QPLDCDDIY_ 0 0 0 ENST00000571210.1_1_17:19288554-19290486:-|nuORF;ENSG00000166482|ENST00000299610|MFAP4;nc|ENSG00000166482|P55083-2|MFAP4 ENST00000571210.1_1_17:19288554-19290486:-|nuORF ENST00000571210.1_1_17:19288554-19290486:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2710571289062 2 541.228965 1080.44338 0.30743 0.00016639 2.922 0.0015814 3.2294 0.0017478 541.2294812849981 144.37 0.23579 144.37 144.24 144.47 0 9 6 2 0 0 0 0.80521 1 28829 28829 15.847 13.787 1 1550300 36407 5730 24501 24517 35848 35848 -0.09362783041638068 QPLDCDDIY 9 Unmodified _QPLDCDDIY_ 0 0 0 ENST00000571210.1_1_17:19288554-19290486:-|nuORF;ENSG00000166482|ENST00000299610|MFAP4;nc|ENSG00000166482|P55083-2|MFAP4 ENST00000571210.1_1_17:19288554-19290486:-|nuORF ENST00000571210.1_1_17:19288554-19290486:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2757568359375 2 541.228965 1080.44338 0.18822 0.00010187 2.3252 0.0012585 2.5134 0.0013604 541.7319209009751 149.94 0.42216 144.74 144.43 144.85 -5.1994 19 11 3 0 0 0 0.77734 1 29058 29058 13.906 7.7003 1 3025800 36408 5730 24501 24517 35849 35849 -0.09362783041638068 QPLKIKKLI 9 Unmodified _QPLKIKKLI_ 0 0 0 ENSG00000152464|ENST00000378197|RPP38 ENSG00000152464|ENST00000378197|RPP38 ENSG00000152464|ENST00000378197|RPP38 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2763061523438 2 540.878802 1079.74305 0.42482 0.00022978 2.8724 0.0015536 3.2972 0.0017834 541.3826072509145 148.99 0.18373 143.93 143.85 144.03 -5.0595 5 4 2 0 0 0 0.87974 1 28855 28855 4.3292 2.485 1 1637200 36409 4923 24502 24518 35850 35850 0.20636922092876375 QPLKQKCKN 9 Unmodified _QPLKQKCKN_ 0 0 0 REV__PROX1|p.R209C|2|0.11|ENSG00000117707|chr1:213997160-213997160|C/T|missense_variant REV__PROX1|p.R209C|2|0.11|ENSG00000117707|chr1:213997160-213997160|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7745361328125 2 543.808051 1085.60155 NaN NaN NaN NaN NaN NaN NaN 161.39 1 161.39 160.89 161.89 0 0 0 0 0.22962 1 32416 32416 14.838 1.3304 1 + 36410 24513 24503 24519 35851 35851 0.06217180728117455 QPLLLPPAAR 10 Unmodified _QPLLLPPAAR_ 0 0 0 FZD5|p.N350Qfs*249|1|0.14|ENSG00000163251|chr2:207767693-207767694|-/C|frameshift_variant FZD5|p.N350Qfs*249|1|0.14|ENSG00000163251|chr2:207767693-207767694|-/C|frameshift_variant FZD5|p.N350Qfs*249|1|0.14|ENSG00000163251|chr2:207767693-207767694|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 359.2474365234375 3 359.225598 1074.65496 0.1174 4.2174E-05 -0.0059533 -2.1386E-06 0.11145 4.0036E-05 359.2255324902808 61.761 0.6706 58.391 58.073 58.744 -3.3694 41 18 3 0 0 0 0.91149 1 11496 11496 3.3196 0 1 2769000 36411 11831 24504 24520 35852 35852 0.12062301502260198 QPLLVGFLTY 10 Unmodified _QPLLVGFLTY_ 0 0 0 REV__USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant REV__USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.333984375 2 575.828975 1149.6434 0.43225 0.0002489 4.0809 0.0023499 4.5132 0.0025988 575.8307107780532 68.628 0.21628 65.091 65.04 65.256 -3.5362 8 5 2 0 0 0 0.71778 1 12913 12913 9.3831 1.2276 1 1188400 + 36412 25523 24505 24521 35853 35853 0.07456059688274763 QPLNDDDDD 9 Unmodified _QPLNDDDDD_ 0 0 0 REV__ANKRD40|p.G147Afs*26|2|0.23|ENSG00000154945|chr17:50699737-50699737|C/-|frameshift_variant REV__ANKRD40|p.G147Afs*26|2|0.23|ENSG00000154945|chr17:50699737-50699737|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6991577148438 2 523.699083 1045.38361 NaN NaN NaN NaN NaN NaN NaN 142.78 1 138.13 137.63 138.63 -4.656 0 0 0 0.23508 1 28224 28224 4.3292 0 1 + 36413 13062 24506 24522 35854 35854 -0.13726382451318386 QPLNDDDDD 9 Unmodified _QPLNDDDDD_ 0 0 0 REV__ANKRD40|p.G147Afs*26|2|0.23|ENSG00000154945|chr17:50699737-50699737|C/-|frameshift_variant REV__ANKRD40|p.G147Afs*26|2|0.23|ENSG00000154945|chr17:50699737-50699737|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6990966796875 2 523.699083 1045.38361 NaN NaN NaN NaN NaN NaN NaN 142.73 1 137.83 137.33 138.33 -4.8982 0 0 0 0.23508 1 27542 27542 4.3292 0.38484 1 + 36414 13062 24506 24522 35855 35855 -0.13726382451318386 QPLPLPQAPH 10 Unmodified _QPLPLPQAPH_ 0 0 0 REV__PHLPP1|p.N1186Tfs*10|1|0.14|ENSG00000081913|chr18:62963464-62963464|A/-|frameshift_variant REV__PHLPP1|p.N1186Tfs*10|1|0.14|ENSG00000081913|chr18:62963464-62963464|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 549.8121948242188 2 549.308741 1096.60293 0.22044 0.00012109 2.2733 0.0012487 2.4937 0.0013698 549.3092630197465 166.36 0.20386 161.38 161.26 161.46 -4.9811 7 5 2 0 0 0 0.67319 1 32607 32607 13.906 0.86358 1 5469300 + 36415 14433 24507 24523 35856 35856 0.05849138088501604 QPLPPGVALYP 11 Unmodified _QPLPPGVALYP_ 0 0 0 REV__ENST00000470432.5_1_1:150482366-150482774:+|nuORF REV__ENST00000470432.5_1_1:150482366-150482774:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3121337890625 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 141.99 1 136.99 136.49 137.49 -5.0038 0 0 0 0.22862 1 27355 27355 9.3831 1.2276 1 + 36416 22030 24508 24524 35857 35857 0.06935175545504535 QPLPYGLAA 9 Unmodified _QPLPYGLAA_ 0 0 0 REV__nc|ENSG00000175505|Q9UBD9-2|CLCF1 REV__nc|ENSG00000175505|Q9UBD9-2|CLCF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2568359375 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 63.116 1 59.859 59.359 60.359 -3.2567 0 0 0 0.22962 1 11842 11842 14.838 1.7958 1 + 36417 18477 24509 24525 35858 35858 0.034706863857991266 QPLPYGLAA 9 Unmodified _QPLPYGLAA_ 0 0 0 REV__nc|ENSG00000175505|Q9UBD9-2|CLCF1 REV__nc|ENSG00000175505|Q9UBD9-2|CLCF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25616455078125 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 63.346 1 60.089 59.589 60.589 -3.2567 0 0 0 0.21065 1 11885 11885 20.454 7.4112 1 + 36418 18477 24509 24525 35859 35859 0.034706863857991266 QPLQLQGS 8 Unmodified _QPLQLQGS_ 0 0 0 nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant;EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant nc|ENSG00000183495|Q96L91-3|EP400 nc|ENSG00000183495|Q96L91-3|EP400 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2290344238281 2 435.737617 869.460681 -0.1071 -4.6665E-05 0.088471 3.855E-05 -0.018624 -8.1153E-06 435.7375968865528 40.759 0.98722 38.27 37.83 38.818 -2.4896 72 27 4 0 0 0 0.68128 1 7290 7290 16.942 0 1 6645900 36419 12505 24510 24526 35860 35860 0.02072925346340071 QPLQLQGS 8 Unmodified _QPLQLQGS_ 0 0 0 nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant;EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant nc|ENSG00000183495|Q96L91-3|EP400 nc|ENSG00000183495|Q96L91-3|EP400 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 435.737617 869.460681 0.256 0.00011155 -0.28076 -0.00012234 -0.024767 -1.0792E-05 435.73744815231055 38.263 0.8911 38.263 37.892 38.783 0 0.050924 -0.00031873 NaN 16.942 65 24 3 NaN NaN NaN NaN 0 NaN NaN 0 9075000 36420 12505 24510 24526 0.02072925346340071 QPLQLQGS 8 Unmodified _QPLQLQGS_ 0 0 0 nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant;EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant nc|ENSG00000183495|Q96L91-3|EP400 nc|ENSG00000183495|Q96L91-3|EP400 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 435.737617 869.460681 -0.35377 -0.00015415 0.31714 0.00013819 -0.036622 -1.5957E-05 435.7377167979342 40.715 1.058 38.08 37.619 38.677 -2.6348 -0.13195 0.00020233 NaN 16.942 68 29 3 NaN NaN NaN NaN 0 NaN NaN 0 17077000 36421 12505 24510 24526 0.02072925346340071 QPLQLQGS 8 Unmodified _QPLQLQGS_ 0 0 0 nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant;EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant nc|ENSG00000183495|Q96L91-3|EP400 nc|ENSG00000183495|Q96L91-3|EP400 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 435.737617 869.460681 -0.062138 -2.7076E-05 0.1132 4.9327E-05 0.051066 2.2251E-05 435.73761321214954 40.775 0.94946 38.235 37.78 38.73 -2.5398 0.023369 2.4598E-05 NaN 16.942 64 26 3 NaN NaN NaN NaN 0 NaN NaN 0 9600500 36422 12505 24510 24526 0.02072925346340071 QPLQTDDDY 9 Unmodified _QPLQTDDDY_ 0 0 0 REV__nc|ENSG00000102780|Q86XP1-5|DGKH REV__nc|ENSG00000102780|Q86XP1-5|DGKH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7855224609375 2 547.735468 1093.45638 NaN NaN NaN NaN NaN NaN NaN 128.14 1 128.14 127.64 128.64 0 0 0 0 0.23508 1 25303 25303 7.9102 1.5561 1 + 36423 14847 24511 24527 35861 35861 -0.08660628657912639 QPLRAAVKRL 10 Unmodified _QPLRAAVKRL_ 0 0 0 TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3187866210938 2 576.372207 1150.72986 NaN NaN NaN NaN NaN NaN NaN 170.85 1 166.06 165.56 166.56 -4.7898 0 0 0 0.22588 1 34702 34702 3.2813 0.78282 1 36424 25826 24512 24528 35862 35862 0.16052484033502878 QPLSHYFIT 9 Unmodified _QPLSHYFIT_ 0 0 0 PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant;PLCH2|p.G1073Rfs*20|1|0.35|ENSG00000149527|chr1:2504173-2504174|-/C|frameshift_variant;ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2 PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 553.7353515625 2 553.287474 1104.5604 0.21109 0.0001168 0.22248 0.00012309 0.43357 0.00023989 553.2873153778077 149 1.0014 144.29 143.68 144.68 -4.7095 41 27 2 0 0 0 0.6329 1 29509 29509 10.824 0 1 2167200 36425 4796 24513 24529 35863 35863 0.012297429602767807 QPLSHYFIT 9 Unmodified _QPLSHYFIT_ 0 0 0 PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant;PLCH2|p.G1073Rfs*20|1|0.35|ENSG00000149527|chr1:2504173-2504174|-/C|frameshift_variant;ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2 PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 553.287474 1104.5604 0.21109 0.0001168 0.22248 0.00012309 0.43357 0.00023989 553.2873153778077 149 1.0014 144.29 143.68 144.68 -4.7095 0.11318 0.00014391 NaN 10.824 41 27 2 NaN NaN NaN NaN 0 NaN NaN 0 2167200 36426 4796 24513 24529 0.012297429602767807 QPLSHYFIT 9 Unmodified _QPLSHYFIT_ 0 0 0 PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant;PLCH2|p.G1073Rfs*20|1|0.35|ENSG00000149527|chr1:2504173-2504174|-/C|frameshift_variant;ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2 PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 553.287474 1104.5604 0.40336 0.00022318 -0.068461 -3.7879E-05 0.3349 0.0001853 553.2871514850245 149.18 0.81656 144.06 143.57 144.39 -5.1204 -0.11318 -0.00017803 NaN 10.824 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1835300 36427 4796 24513 24529 0.012297429602767807 QPLSPGSQTLL 11 Unmodified _QPLSPGSQTLL_ 0 0 0 REV__ENST00000546152.1_3_11:60670950-60671297:-|nuORF REV__ENST00000546152.1_3_11:60670950-60671297:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21551513671875 3 380.880156 1139.61864 -0.53402 -0.0002034 1.343 0.00051151 0.80895 0.00030811 381.2152332698317 39.432 0.6629 37.027 36.69 37.353 -2.4049 39 18 3 0 0 0 0.79428 1 7086 7086 4.4062 0.21665 1 1247900 + 36428 22894 24514 24530 35864 35864 0.054413798149198556 QPLSWLFR 8 Unmodified _QPLSWLFR_ 0 0 0 REV__SIX4|p.S139N|1|0.39|ENSG00000100625|chr14:60723659-60723659|C/T|missense_variant REV__SIX4|p.S139N|1|0.39|ENSG00000100625|chr14:60723659-60723659|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6981811523438 2 523.792727 1045.5709 0.3459 0.00018118 1.6869 0.00088358 2.0328 0.0010648 524.2944405589084 143.62 0.49118 138.73 138.47 138.97 -4.8982 15 13 2 0 0 0 0.95515 1 27733 27733 21.747 17.417 1 2971000 + 36429 14728 24515 24531 35865 35865 0.049937704053718335 QPLTIERFTR 10 Unmodified _QPLTIERFTR_ 0 0 0 REV__MAPK15|p.L64P|1|0.23|ENSG00000181085|chr8:143718072-143718072|T/C|missense_variant REV__MAPK15|p.L64P|1|0.23|ENSG00000181085|chr8:143718072-143718072|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7649536132812 2 630.856586 1259.69862 NaN NaN NaN NaN NaN NaN NaN 132.69 1 132.69 132.19 133.19 0 0 0 0 0.22588 1 26237 26237 10.8 0 1 + 36430 23835 24516 24532 35866 35866 0.07915866208736588 QPLVSVMKI 9 Unmodified _QPLVSVMKI_ 0 0 0 ENST00000291547.9_1_21:44394669-44424459:+|nuORF ENST00000291547.9_1_21:44394669-44424459:+|nuORF ENST00000291547.9_1_21:44394669-44424459:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.207763671875 3 338.872056 1013.59434 0.68648 0.00023263 1.7634 0.00059757 2.4499 0.0008302 338.87285575222177 27.141 0.71071 25.358 25.165 25.875 -1.7821 36 19 2 0 0 0 0.60489 1 4805 4805 0.029283 0 1 5991400 36431 8478 24517 24533 35867 35867 0.08808448127683732 QPLWALLEQY 10 Unmodified _QPLWALLEQY_ 0 0 0 nc|ENSG00000106113|Q13324-2|CRHR2 nc|ENSG00000106113|Q13324-2|CRHR2 nc|ENSG00000106113|Q13324-2|CRHR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7734985351562 2 630.834788 1259.65502 NaN NaN NaN NaN NaN NaN NaN 124.57 1 119.8 119.3 120.3 -4.7681 0 0 0 0.22588 1 23922 23922 6.7232 0.51738 1 36432 12274 24518 24534 35868 35868 0.0355825671160801 QPLWFKDL 8 Unmodified _QPLWFKDL_ 0 0 0 ENSG00000176681|ENST00000320254|LRRC37A ENSG00000176681|ENST00000320254|LRRC37A ENSG00000176681|ENST00000320254|LRRC37A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6865844726562 2 523.78711 1045.55967 NaN NaN NaN NaN NaN NaN NaN 161.97 1 156.83 156.33 157.33 -5.1438 0 0 0 0.21039 1 31458 31458 16.942 0 1 36433 6481 24519 24535 35869 35869 0.038709483112370435 QPLWFKDL 8 Unmodified _QPLWFKDL_ 0 0 0 ENSG00000176681|ENST00000320254|LRRC37A ENSG00000176681|ENST00000320254|LRRC37A ENSG00000176681|ENST00000320254|LRRC37A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6792602539062 2 523.78711 1045.55967 NaN NaN NaN NaN NaN NaN NaN 162 1 156.86 156.36 157.36 -5.1438 0 0 0 0.20462 1 31465 31465 21.747 3.6003 1 36434 6481 24519 24535 35870 35870 0.038709483112370435 QPLWPPPLPCP 11 Unmodified _QPLWPPPLPCP_ 0 0 0 ENST00000356654.8_1_12:7050946-7051303:+|nuORF ENST00000356654.8_1_12:7050946-7051303:+|nuORF ENST00000356654.8_1_12:7050946-7051303:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7713012695312 2 622.828452 1243.64235 NaN NaN NaN NaN NaN NaN NaN 152.23 1 152.23 151.73 152.73 0 0 0 0 0.22632 1 30489 30489 0.03141 0 1 36435 8969 24520 24536 35871 35871 0.030275220477278708 QPMALSLYR 9 Unmodified _QPMALSLYR_ 0 0 0 ENSG00000215305|ENST00000380445|VPS16;ENST00000380393.7_1_20:2844875-2903853:+|nuORF;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;nc|ENSG00000215305|Q9H269-2|VPS16 ENSG00000215305|ENST00000380445|VPS16 ENSG00000215305|ENST00000380445|VPS16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013244628906 3 360.19531 1077.5641 -0.37247 -0.00013416 0.31958 0.00011511 -0.052892 -1.9051E-05 360.19537307401356 66.408 0.69538 63.081 62.747 63.442 -3.3268 47 19 3 0 0 0 0.69394 1 12438 12438 6.6304 1.3335 1 3125200 36436 7744 24521 24537 35872 35872 0.028420894624787252 QPMENSGFR 9 Unmodified _QPMENSGFR_ 0 0 0 nc|ENSG00000107897|Q5T8D3-4|ACBD5;nc|ENSG00000107897|Q5T8D3-2|ACBD5;ENSG00000107897|ENST00000396271|ACBD5;nc|ENSG00000107897|Q5T8D3|ACBD5 nc|ENSG00000107897|Q5T8D3-4|ACBD5 nc|ENSG00000107897|Q5T8D3-4|ACBD5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2718505859375 2 533.242741 1064.47093 NaN NaN NaN NaN NaN NaN NaN 144.22 1 139.28 138.78 139.78 -4.9445 0 0 0 0.23508 1 27851 27851 4.3292 0.38484 1 36437 2447 24522 24538 35873 35873 -0.05872834990736919 QPMHRYDVSA 10 Unmodified _QPMHRYDVSA_ 0 0 0 ENSG00000181449|ENST00000325404|SOX2 ENSG00000181449|ENST00000325404|SOX2 ENSG00000181449|ENST00000325404|SOX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.28369140625 2 602.282397 1202.55024 NaN NaN NaN NaN NaN NaN NaN 16.842 1 15.626 15.126 16.126 -1.2159 0 0 0 0.22588 1 2671 2671 2.9952 0.26005 1 36438 6724 24523 24539 35874 35874 -0.04293188036604079 QPMKNLSHIYF 11 Unmodified _QPMKNLSHIYF_ 0 0 0 RXFP2|p.M490Kfs*26|1|0.05|ENSG00000133105|chr13:31792770-31792771|-/AGAAT|frameshift_variant;RXFP2|p.L680Pfs*4|1|0.15|ENSG00000133105|chr13:31802169-31802170|-/T|frameshift_variant;RXFP2|p.F679Sfs*8|1|0.09|ENSG00000133105|chr13:31802170-31802170|T/-|frameshift_variant;nc|ENSG00000133105|Q8WXD0-2|RXFP2;ENSG00000133105|ENST00000298386|RXFP2 RXFP2|p.M490Kfs*26|1|0.05|ENSG00000133105|chr13:31792770-31792771|-/AGAAT|frameshift_variant RXFP2|p.M490Kfs*26|1|0.05|ENSG00000133105|chr13:31792770-31792771|-/AGAAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2408447265625 3 459.904307 1376.69109 NaN NaN NaN NaN NaN NaN NaN 21.266 1 19.545 19.045 20.045 -1.7211 0 0 0 0.23698 1 3316 3316 1.4551 0.24029 1 36439 3784 24524 24540 35875 35875 0.017813906168385074 QPMSLQPK 8 Unmodified _QPMSLQPK_ 0 0 0 REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484 REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.15887451171875 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 178.98 1 174.07 173.57 174.57 -4.9088 0 0 0 0.21486 1 35708 35708 0.40072 0 1 + 36440 15876 24525 24541 35876 35876 0.018144425083619353 QPMTIATTSH 10 Unmodified _QPMTIATTSH_ 0 0 0 ENST00000396593.6_2_16:8948778-8948955:-|nuORF ENST00000396593.6_2_16:8948778-8948955:-|nuORF ENST00000396593.6_2_16:8948778-8948955:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7958984375 2 543.766049 1085.51754 0.22995 0.00012504 -0.45909 -0.00024964 -0.22914 -0.0001246 543.7656281294645 15.04 0.31825 15.04 14.807 15.125 0 13 8 2 0 0 0 0.90091 1 2230 2230 6.2058 0 1 484530 36441 9449 24526 24542 35877 35877 -0.021793951594645478 QPMWNVSLL 9 Unmodified _QPMWNVSLL_ 0 0 0 ENST00000497807.1_1_1:39934322-39950491:+|nuORF;ENST00000496360.5_1_1:39934274-39950491:+|nuORF ENST00000497807.1_1_1:39934322-39950491:+|nuORF ENST00000497807.1_1_1:39934322-39950491:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7695922851562 2 544.283877 1086.5532 -1.0874 -0.00059185 3.1957 0.0017393 2.1083 0.0011475 544.2858911720438 18.4 0.54716 16.885 16.507 17.054 -1.5148 24 15 2 0 0 0 0.88111 1 2678 2678 3.5965 0.31518 1 379340 36442 10574 24527 24543 35878 35878 0.013386870882186486 QPMYYFLSM 9 Unmodified _QPMYYFLSM_ 0 0 0 ENSG00000167359|ENST00000380211|OR51I1 ENSG00000167359|ENST00000380211|OR51I1 ENSG00000167359|ENST00000380211|OR51I1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2633056640625 2 590.264296 1178.51404 NaN NaN NaN NaN NaN NaN NaN 23.415 1 21.627 21.127 22.127 -1.7886 0 0 0 0.23508 1 3764 3764 1.8442 0 1 36443 5804 24528 24544 35879 35879 -0.0680778125768029 QPNEQGNFPP 10 Unmodified _QPNEQGNFPP_ 0 0 0 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.0714416503906 3 376.508722 1126.50434 -0.14435 -5.435E-05 -0.092434 -3.4802E-05 -0.23679 -8.9152E-05 376.5086678841081 21.965 0.66476 20.578 20.312 20.977 -1.3864 69 18 6 0 0 0 0.91149 1 3552 3552 0.69767 0.42865 1 30601000 36444 1916 24529 24545 35880 35880 -0.05385509947177525 QPNEQGNFPP 10 Unmodified _QPNEQGNFPP_ 0 0 0 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 376.508722 1126.50434 -0.17623 -6.6351E-05 -0.068816 -2.591E-05 -0.24504 -9.2261E-05 376.50868729381585 20.478 0.81375 20.478 20.238 21.052 0 -0.076219 0.00011144 NaN 0.69767 58 22 4 NaN NaN NaN NaN 0 NaN NaN 0 27726000 36445 1916 24529 24545 -0.05385509947177525 QPNEQGNFPP 10 Unmodified _QPNEQGNFPP_ 0 0 0 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 376.508722 1126.50434 0.34355 0.00012935 -0.55934 -0.0002106 -0.21579 -8.1247E-05 376.5084964876079 22.081 0.49191 20.607 20.377 20.869 -1.4742 0.052355 -0.00044262 NaN 0.69767 55 13 5 NaN NaN NaN NaN 0 NaN NaN 0 23765000 36446 1916 24529 24545 -0.05385509947177525 QPNLAEMI 8 Unmodified _QPNLAEMI_ 0 0 0 ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF ENST00000482171.5_1_2:130912606-130913705:-|nuORF ENST00000482171.5_1_2:130912606-130913705:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2245178222656 2 458.233853 914.453153 NaN NaN NaN NaN NaN NaN NaN 28.181 1 26.426 25.926 26.926 -1.7552 0 0 0 0.19954 1 4748 4748 24.674 1.5255 1 36447 4029 24530 24546 35881 35881 -0.0074955024559812955 QPPAGPPAVQ 10 Unmodified _QPPAGPPAVQ_ 0 0 0 nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant nc|ENSG00000183495|Q96L91-3|EP400 nc|ENSG00000183495|Q96L91-3|EP400 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.251220703125 2 481.258717 960.50288 0.26242 0.00012629 -0.064859 -3.1214E-05 0.19756 9.508E-05 481.25858361560273 35.296 0.90147 33.019 32.45 33.352 -2.2766 46 25 2 0 0 0 0.4942 1 6107 6107 24.991 6.8446 1 753480 36448 12505 24531 24547 35882 35882 0.021049007546935172 QPPCKPPCKP 10 Unmodified _QPPCKPPCKP_ 0 0 0 REV__ENSG00000187223|ENST00000368784|LCE2D REV__ENSG00000187223|ENST00000368784|LCE2D MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7789306640625 2 547.777905 1093.54126 NaN NaN NaN NaN NaN NaN NaN 21.883 1 20.498 19.998 20.998 -1.3847 0 0 0 0.22583 1 3460 3460 13.906 0.86358 1 + 36449 19021 24532 24548 35883 35883 -0.0017725292661907588 QPPLIAQY 8 Unmodified _QPPLIAQY_ 0 0 0 REV__ENST00000607882.5_1_7:66147179-66205083:+|nuORF REV__ENST00000607882.5_1_7:66147179-66205083:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2572326660156 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 148.96 1 148.96 148.46 149.46 0 0 0 0 0.21486 1 29816 29816 9.3474 0.75416 1 + 36450 23473 24533 24549 35884 35884 0.034706863857991266 QPPLYPPPA 9 Unmodified _QPPLYPPPA_ 0 0 0 REV__IQSEC2|p.Q1376Sfs*21|1|0.15|ENSG00000124313|chrX:53234560-53234560|G/-|frameshift_variant REV__IQSEC2|p.Q1376Sfs*21|1|0.15|ENSG00000124313|chrX:53234560-53234560|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.264892578125 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 69.411 1 66.02 65.52 66.52 -3.3903 0 0 0 0.23508 1 13126 13126 11.64 0 1 + 36451 15773 24534 24550 35885 35885 0.027349729028514957 QPPNLPKL 8 Unmodified _QPPNLPKL_ 0 0 0 REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 454.76702880859375 2 453.774003 905.533452 0.6954 0.00031555 -0.40074 -0.00018185 0.29465 0.00013371 453.7737603212464 105.84 0.79551 101.75 101.43 102.23 -4.0913 52 22 3 0 0 0 8448 1 20348 20348 14.838 14.715 1 6556800 + 36452 14073 24535 24551 35886 35886 0.076906791397505 QPPPWPAG 8 Unmodified _QPPPWPAG_ 0 0 0 ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;nc|ENSG00000186815|Q9ULQ1-2|TPCN1 ENST00000428632.7_1_12:113682520-113726187:+|nuORF ENST00000428632.7_1_12:113682520-113726187:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2286376953125 2 425.216321 848.418088 NaN NaN NaN NaN NaN NaN NaN 109.34 1 104.96 104.46 105.46 -4.3776 0 0 0 0.22834 1 21549 21549 0.12286 0 1 36453 9755 24536 24552 35887 35887 -0.012184249912479572 QPPQHVGS 8 Unmodified _QPPQHVGS_ 0 0 0 REV__ENST00000450512.1_3_15:100271609-100273550:-|nuORF REV__ENST00000450512.1_3_15:100271609-100273550:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25164794921875 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 109.49 1 105.12 104.62 105.62 -4.3776 0 0 0 0.21486 1 21579 21579 9.3474 0 1 + 36454 18816 24537 24553 35888 35888 -0.016205144849436692 QPPQHVGS 8 Unmodified _QPPQHVGS_ 0 0 0 REV__ENST00000450512.1_3_15:100271609-100273550:-|nuORF REV__ENST00000450512.1_3_15:100271609-100273550:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2426452636719 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 109.43 1 104.97 104.47 105.47 -4.4518 0 0 0 0.22676 1 21003 21003 0.12286 0 1 + 36455 18816 24537 24553 35889 35889 -0.016205144849436692 QPPQHVGS 8 Unmodified _QPPQHVGS_ 0 0 0 REV__ENST00000450512.1_3_15:100271609-100273550:-|nuORF REV__ENST00000450512.1_3_15:100271609-100273550:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2426452636719 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 109.44 1 104.99 104.49 105.49 -4.4518 0 0 0 0.21486 1 21005 21005 9.3474 0 1 + 36456 18816 24537 24553 35890 35890 -0.016205144849436692 QPPRPCGP 8 Unmodified _QPPRPCGP_ 0 0 0 REV__ENSG00000198535|ENST00000355522|C2CD4A REV__ENSG00000198535|ENST00000355522|C2CD4A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 426.2911682128906 2 426.213255 850.411957 NaN NaN NaN NaN NaN NaN NaN 42.535 1 39.816 39.316 40.316 -2.7191 0 0 0 0.21486 1 7959 7959 5.7604 1.0044 1 + 36457 19419 24538 24554 35891 35891 -0.019232664944070166 QPPRRFHEQPS 11 Unmodified _QPPRRFHEQPS_ 0 0 0 REV__ENSG00000183808|ENST00000520560|RBM12B REV__ENSG00000183808|ENST00000520560|RBM12B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2394104003906 3 460.237337 1377.69018 NaN NaN NaN NaN NaN NaN NaN 71.317 1 67.737 67.237 68.237 -3.5798 0 0 0 0.22632 1 13448 13448 0.03141 0 1 + 36458 18867 24539 24555 35892 35892 0.016443122921373288 QPPSHPRP 8 Unmodified _QPPSHPRP_ 0 0 0 ENST00000419037.5_1_7:99755529-99756111:-|nuORF ENST00000419037.5_1_7:99755529-99756111:-|nuORF ENST00000419037.5_1_7:99755529-99756111:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23834228515625 2 458.243401 914.472249 0.28314 0.00012975 -1.1911 -0.00054579 -0.90792 -0.00041605 458.24283143633727 30.194 1.8549 28.301 27.651 29.506 -1.8928 165 52 5 0 0 0 8448 1 5150 5150 6.2344 0 1 75773000 36459 9647 24540 24556 35893 35893 0.011591671603241593 QPPSTLTSF 9 Unmodified _QPPSTLTSF_ 0 0 0 L1MD2_dup2312|chr3:169838249-169838855:-|1.025247598227015|0.1719973841498203|2.58|473.0|36|3|anti-sense L1MD2_dup2312|chr3:169838249-169838855:-|1.025247598227015|0.1719973841498203|2.58|473.0|36|3|anti-sense L1MD2_dup2312|chr3:169838249-169838855:-|1.025247598227015|0.1719973841498203|2.58|473.0|36|3|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2537841796875 2 489.250557 976.486562 0.49569 0.00024252 -0.40894 -0.00020007 0.086754 4.2445E-05 489.25030421580317 117.3 0.80051 112.7 112.35 113.15 -4.5994 53 22 3 0 0 0 0.60805 1 22551 22551 12.532 0.89125 1 3882300 36460 12030 24541 24557 35894 35894 -0.00262225202038735 QPQAIGFLLRY 11 Unmodified _QPQAIGFLLRY_ 0 0 0 REV__ENST00000487231.5_1_17:26881240-26882135:-|nuORF REV__ENST00000487231.5_1_17:26881240-26882135:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 653.3671264648438 2 653.36933 1304.72411 NaN NaN NaN NaN NaN NaN NaN 27.444 1 25.662 25.162 26.162 -1.7821 0 0 0 0.23634 1 4877 4877 3.2813 0.54611 1 + 36461 22254 24542 24558 35895 35895 0.08393340731186072 QPQDEDDAE 9 Unmodified _QPQDEDDAE_ 0 0 0 ENSG00000025039|ENST00000369415|RRAGD ENSG00000025039|ENST00000369415|RRAGD ENSG00000025039|ENST00000369415|RRAGD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6983032226562 2 523.699083 1045.38361 NaN NaN NaN NaN NaN NaN NaN 148.06 1 142.9 142.4 143.4 -5.1557 0 0 0 0.23508 1 28656 28656 3.9444 0.3479 1 36462 1138 24543 24559 35896 35896 -0.13726382451318386 QPQFPSHP 8 Unmodified _QPQFPSHP_ 0 0 0 ENSG00000132326|ENST00000254657|PER2 ENSG00000132326|ENST00000254657|PER2 ENSG00000132326|ENST00000254657|PER2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1504211425781 3 313.155732 936.445365 NaN NaN NaN NaN NaN NaN NaN 110.46 1 106.23 105.73 106.73 -4.2289 0 0 0 0.21486 1 21260 21260 1.6526 0 1 36463 3716 24544 24560 35897 35897 -0.025399414508569862 QPQGCCPRAS 10 Unmodified _QPQGCCPRAS_ 0 0 0 ENST00000585171.5_1_17:15603407-15638248:+|nuORF;ENST00000454745.2_1_17:18585014-18585560:-|nuORF ENST00000585171.5_1_17:15603407-15638248:+|nuORF ENST00000585171.5_1_17:15603407-15638248:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.68115234375 2 523.728943 1045.44333 NaN NaN NaN NaN NaN NaN NaN 150.67 1 145.94 145.44 146.44 -4.7323 0 0 0 0.22588 1 29928 29928 6.2058 0.44535 1 36464 11530 24545 24561 35898 35898 -0.07757061522625008 QPQGDGVPS 9 Unmodified _QPQGDGVPS_ 0 0 0 REV__ENST00000465717.1_1_1:170508481-170508748:+|nuORF REV__ENST00000465717.1_1_1:170508481-170508748:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 885.4140014648438 1 884.410837 883.40356 0.46758 0.00041353 0.10208 9.0276E-05 0.56966 0.00050381 884.410993382854 28.404 0.34974 26.407 26.204 26.554 -1.9962 14 9 2 0 0 0 0.74257 1 4778 4778 4.3292 0 1 599550 + 36465 15621 24546 24562 35899 35899 -0.04280541930029358 QPQGFDNQAF 10 Unmodified _QPQGFDNQAF_ 0 0 0 nc|ENSG00000099834|Q9HBB8-2|CDHR5;nc|ENSG00000099834|Q9HBB8-4|CDHR5;ENSG00000099834|ENST00000397542|CDHR5 nc|ENSG00000099834|Q9HBB8-2|CDHR5 nc|ENSG00000099834|Q9HBB8-2|CDHR5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3380737304688 2 576.259445 1150.50434 NaN NaN NaN NaN NaN NaN NaN 150.1 1 145.37 144.87 145.87 -4.7323 0 0 0 0.22583 1 29808 29808 13.906 2.4113 1 36466 1903 24547 24563 35900 35900 -0.06489509947209626 QPQGRSPTPP 10 Unmodified _QPQGRSPTPP_ 0 0 0 ENST00000474033.5_1_1:1288405-1288789:-|nuORF ENST00000474033.5_1_1:1288405-1288789:-|nuORF ENST00000474033.5_1_1:1288405-1288789:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2784423828125 2 532.777805 1063.54106 0.27555 0.00014681 -0.25179 -0.00013415 0.023763 1.2661E-05 532.7776818242285 22.233 0.87785 20.78 20.562 21.44 -1.4535 31 24 2 0 0 0 0.65108 1 3570 3570 16.149 2.2431 1 487680 36467 10251 24548 24564 35901 35901 0.011827866693693068 QPQPPPKMGD 10 Unmodified _QPQPPPKMGD_ 0 0 0 ENSG00000181555|ENST00000409792|SETD2;SETD2|p.R1407Gfs*5|1|0.18|ENSG00000181555|chr3:47120417-47120417|T/-|frameshift_variant;SETD2|p.N1396Mfs*16|1|0.42|ENSG00000181555|chr3:47120449-47120449|T/-|frameshift_variant;nc|ENSG00000181555|Q9BYW2-3|SETD2;SETD2|p.T1652Yfs*14|1|0.26|ENSG00000181555|chr3:47101519-47101520|-/A|frameshift_variant;nc|ENSG00000181555|Q9BYW2-2|SETD2;SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7677612304688 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 161.15 1 156.35 155.85 156.85 -4.7952 0 0 0 0.22588 1 32047 32047 5.2969 0.54088 1 36468 6728 24549 24565 35902 35902 -0.020390912968423436 QPQRWWRRPRR 11 Unmodified _QPQRWWRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3826904296875 2 811.455991 1620.89743 NaN NaN NaN NaN NaN NaN NaN 174.15 1 174.15 173.65 174.65 0 0 0 0 0.22632 1 36041 36041 0.026206 0 1 + 36469 21016 24550 24566 35903 35903 0.1118156435079527 QPQRWWRRPRR 11 Unmodified _QPQRWWRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2845458984375 3 541.306419 1620.89743 0.17241 9.3328E-05 4.2806 0.0023171 4.453 0.0024105 541.3085566522002 144.76 0.55759 139.69 139.35 139.91 -5.0671 20 15 2 0 0 0 0.80907 2 27923 27917;27923 2.4348 1.9288 1 20107000 + 36470 21016 24550 24566 35904;35905 35905 0.1118156435079527 QPQRWWRRPRR 11 Unmodified _QPQRWWRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2739868164062 3 541.306419 1620.89743 0.17241 9.3328E-05 4.2806 0.0023171 4.453 0.0024105 541.3085566522002 144.76 0.55759 139.69 139.35 139.91 -5.0671 20 15 2 0 0 0 0.96218 1 27908 27908 1.2148 1.1416 1 20107000 + 36471 21016 24550 24566 35906 35906 0.1118156435079527 QPQRWWRRPRR 11 Unmodified _QPQRWWRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.3042602539062 3 541.306419 1620.89743 NaN NaN NaN NaN NaN NaN NaN 170.44 1 165.57 165.07 166.07 -4.873 0 0 0 0.22632 1 33730 33730 0.50596 0.41111 1 + 36472 21016 24550 24566 35907 35907 0.1118156435079527 QPRAGGPQP 9 Unmodified _QPRAGGPQP_ 0 0 0 ENST00000551000.1_1_12:57871100-57871616:-|nuORF ENST00000551000.1_1_12:57871100-57871616:-|nuORF ENST00000551000.1_1_12:57871100-57871616:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7540283203125 2 454.240858 906.467164 NaN NaN NaN NaN NaN NaN NaN 119.78 1 115.26 114.76 115.76 -4.5221 0 0 0 0.19684 1 23619 23619 0.073264 0 1 36473 11177 24551 24567 35908 35908 0.010188632977133238 QPRAQAHV 8 Unmodified _QPRAQAHV_ 0 0 0 ENST00000469973.1_1_1:228329173-228329239:+|nuORF ENST00000469973.1_1_1:228329173-228329239:+|nuORF ENST00000469973.1_1_1:228329173-228329239:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7481689453125 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 74.735 1 71.37 70.87 71.87 -3.3643 0 0 0 0.21486 1 14582 14582 8.5933 2.2392 1 36474 10191 24552 24568 35909 35909 0.026625695346069733 QPRAQAHV 8 Unmodified _QPRAQAHV_ 0 0 0 ENST00000469973.1_1_1:228329173-228329239:+|nuORF ENST00000469973.1_1_1:228329173-228329239:+|nuORF ENST00000469973.1_1_1:228329173-228329239:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7474365234375 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 98.648 1 94.516 94.016 95.016 -4.1326 0 0 0 0.21486 1 19370 19370 8.5933 3.3626 1 36475 10191 24552 24568 35910 35910 0.026625695346069733 QPREEEIVS 9 Unmodified _QPREEEIVS_ 0 0 0 REV__nc|ENSG00000176248|Q9UJX6-2|ANAPC2 REV__nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7780151367188 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 75.127 1 71.404 70.904 71.904 -3.7227 0 0 0 0.19512 1 14204 14204 12.241 2.1667 1 + 36476 18504 24553 24569 35911 35911 -0.004043566329528403 QPRFLYSLQ 9 Unmodified _QPRFLYSLQ_ 0 0 0 ENST00000502415.5_1_7:102185221-102212914:-|nuORF ENST00000502415.5_1_7:102185221-102212914:-|nuORF ENST00000502415.5_1_7:102185221-102212914:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3150634765625 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 151.87 1 146.64 146.14 147.14 -5.2365 0 0 0 0.23508 1 29440 29440 6.7232 0 1 36477 10625 24554 24570 35912 35912 0.04421120742927087 QPRIKHQPH 9 Unmodified _QPRIKHQPH_ 0 0 0 REV__ENST00000507175.5_1_5:145838810-145843302:+|nuORF REV__ENST00000507175.5_1_5:145838810-145843302:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 380.908935546875 3 380.884346 1139.63121 NaN NaN NaN NaN NaN NaN NaN 10.04 1 8.9463 8.4463 9.4463 -1.0936 0 0 0 0.23508 1 1116 1116 0.26902 0 1 + 36478 22499 24555 24571 35913 35913 0.06697880788487964 QPRLLLKAL 9 Unmodified _QPRLLLKAL_ 0 0 0 ENST00000607058.1_1_8:24771141-24771990:-|nuORF ENST00000607058.1_1_8:24771141-24771990:-|nuORF ENST00000607058.1_1_8:24771141-24771990:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 351.23712158203125 3 351.237726 1050.69135 NaN NaN NaN NaN NaN NaN NaN 35.916 1 33.639 33.139 34.139 -2.2766 0 0 0 0.23508 1 6326 6326 0.23584 0 1 36479 11753 24556 24572 35914 35914 0.16803178399004537 QPRNFQLKTL 10 Unmodified _QPRNFQLKTL_ 0 0 0 ENST00000438930.5_2_7:76091076-76106458:+|nuORF ENST00000438930.5_2_7:76091076-76106458:+|nuORF ENST00000438930.5_2_7:76091076-76106458:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7720947265625 2 622.859129 1243.70371 NaN NaN NaN NaN NaN NaN NaN 124.79 1 124.79 124.29 125.29 0 0 0 0 0.22588 1 24611 24611 10.074 1.9184 1 36480 9866 24557 24573 35915 35915 0.09160170071368157 QPRNIFTCQP 10 Unmodified _QPRNIFTCQP_ 0 0 0 REV__ENST00000398092.4_1_12:49297531-49333451:-|nuORF REV__ENST00000398092.4_1_12:49297531-49333451:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2774047851562 2 602.30059 1202.58663 NaN NaN NaN NaN NaN NaN NaN 132.59 1 132.59 132.09 133.09 0 0 0 0 0.22588 1 26216 26216 8.7454 2.0222 1 + 36481 21320 24558 24574 35916 35916 -0.006563111399145782 QPRPSAAF 8 Unmodified _QPRPSAAF_ 0 0 0 ENST00000243918.9_1_20:43991701-43991908:+|nuORF ENST00000243918.9_1_20:43991701-43991908:+|nuORF ENST00000243918.9_1_20:43991701-43991908:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2223815917969 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 38.115 1 35.647 35.147 36.147 -2.4688 0 0 0 0.21486 1 7054 7054 11.64 0 1 36482 8195 24559 24575 35917 35917 0.009123624117592044 QPRPSLPLSS 10 Unmodified _QPRPSLPLSS_ 0 0 0 ENSG00000108557|ENST00000353383|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1 ENSG00000108557|ENST00000353383|RAI1 ENSG00000108557|ENST00000353383|RAI1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2633056640625 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 135.44 1 135.44 134.94 135.94 0 0 0 0 0.22535 1 26827 26827 20.415 4.2654 1 36483 2482 24560 24576 35918 35918 0.055685303633026706 QPRRRRRRLS 10 Unmodified _QPRRRRRRLS_ 0 0 0 REV__DACH1|p.P16Lfs*178|1|0.44|ENSG00000276644|chr13:71866723-71866723|G/-|frameshift_variant REV__DACH1|p.P16Lfs*178|1|0.44|ENSG00000276644|chr13:71866723-71866723|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 691.1209716796875 2 690.929609 1379.84466 NaN NaN NaN NaN NaN NaN NaN 44.036 1 44.036 43.536 44.536 0 0 0 0 0.22588 1 8254 8254 0.40072 0.050084 1 36484 13635 24561 24577 35919 35919 0.16993606288019691 QPRRRRRWQRR 11 Unmodified _QPRRRRRWQRR_ 0 0 0 REV__ENST00000295206.6_1_2:119600812-119604160:-|nuORF REV__ENST00000295206.6_1_2:119600812-119604160:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 551.0233764648438 3 550.996468 1649.96757 NaN NaN NaN NaN NaN NaN NaN 171.27 1 166.39 165.89 166.89 -4.873 0 0 0 0.22632 1 33935 33935 0.094841 0.068635 1 + 36485 20368 24562 24578 35920 35920 0.1685886273928645 QPRSTGNAV 9 Unmodified _QPRSTGNAV_ 0 0 0 REV__nc|ENSG00000144597|Q96JC9-2|EAF1 REV__nc|ENSG00000144597|Q96JC9-2|EAF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24298095703125 2 465.243598 928.472643 NaN NaN NaN NaN NaN NaN NaN 27.204 1 25.569 25.069 26.069 -1.6347 0 0 0 0.21844 1 4541 4541 18.146 0.011366 1 + 36486 16791 24563 24579 35921 35921 0.0055454208951459805 QPRVGSMRRY 10 Unmodified _QPRVGSMRRY_ 0 0 0 REV__ENSG00000110811|ENST00000290510|P3H3 REV__ENSG00000110811|ENST00000290510|P3H3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 625.8123779296875 2 625.332756 1248.65096 NaN NaN NaN NaN NaN NaN NaN 39.17 1 36.729 36.229 37.229 -2.4419 0 0 0 0.22323 1 6990 6990 24.021 8.7721 1 + 36487 15220 24564 24580 35922 35922 0.03657888736915993 QPRVSVVRRY 10 Unmodified _QPRVSVVRRY_ 0 0 0 REV__nc|ENSG00000129204|P35125-2|USP6 REV__nc|ENSG00000129204|P35125-2|USP6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7669067382812 2 630.370195 1258.72584 NaN NaN NaN NaN NaN NaN NaN 33.793 1 31.646 31.146 32.146 -2.1468 0 0 0 0.22588 1 5906 5906 3.5965 0.31518 1 + 36488 23204 24565 24581 35923 35923 0.10682394539799134 QPRWWYWPMSW 11 Unmodified _QPRWWYWPMSW_ 0 0 0 ENST00000584716.1_1_17:30815096-30816294:+|nuORF ENST00000584716.1_1_17:30815096-30816294:+|nuORF ENST00000584716.1_1_17:30815096-30816294:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2620849609375 3 541.583568 1621.72887 0.15443 8.3635E-05 -2.1925 -0.0011874 -2.038 -0.0011038 541.5822498012698 143.08 0.21603 138.06 137.89 138.11 -5.0261 6 5 2 0 0 0 0.96225 1 27573 27573 0.45452 0.35968 1 2289700 36489 11526 24566 24582 35924 35924 -0.0571209839772564 QPRWWYWPMSW 11 Unmodified _QPRWWYWPMSW_ 0 0 0 ENST00000584716.1_1_17:30815096-30816294:+|nuORF ENST00000584716.1_1_17:30815096-30816294:+|nuORF ENST00000584716.1_1_17:30815096-30816294:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2774047851562 3 541.583568 1621.72887 0.16213 8.7809E-05 -2.6427 -0.0014312 -2.4806 -0.0013434 541.5809564687522 145.12 0.30896 140.05 139.91 140.22 -5.0671 9 8 2 0 0 0 0.96225 1 28008 28008 0.45452 0.37117 1 2496600 36490 11526 24566 24582 35925 35925 -0.0571209839772564 QPSCKVLY 8 Unmodified _QPSCKVLY_ 0 0 0 ENST00000579186.1_1_17:30368040-30368955:+|nuORF ENST00000579186.1_1_17:30368040-30368955:+|nuORF ENST00000579186.1_1_17:30368040-30368955:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.2270812988281 3 313.165239 936.473888 NaN NaN NaN NaN NaN NaN NaN 72.996 1 72.996 72.496 73.496 0 0 0 0 0.21486 1 14167 14167 3.2813 0.54611 1 36491 11480 24567 24583 35926 35926 0.0031104013406775266 QPSCTSVLC 9 Unmodified _QPSCTSVLC_ 0 0 0 ENSG00000187175|ENST00000391617|KRTAP12-1;ENSG00000221864|ENST00000360770|KRTAP12-2 ENSG00000187175|ENST00000391617|KRTAP12-1 ENSG00000187175|ENST00000391617|KRTAP12-1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1683044433594 3 313.142106 936.404488 NaN NaN NaN NaN NaN NaN NaN 35.844 1 33.567 33.067 34.067 -2.2766 0 0 0 0.23508 1 6312 6312 1.0715 0 1 36492 7101 24568 24584 35927 35927 -0.06625786877009432 QPSCTSVLC 9 Unmodified _QPSCTSVLC_ 0 0 0 ENSG00000187175|ENST00000391617|KRTAP12-1;ENSG00000221864|ENST00000360770|KRTAP12-2 ENSG00000187175|ENST00000391617|KRTAP12-1 ENSG00000187175|ENST00000391617|KRTAP12-1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.162353515625 3 313.142106 936.404488 NaN NaN NaN NaN NaN NaN NaN 39.139 1 36.735 36.235 37.235 -2.4049 0 0 0 0.23508 1 6980 6980 1.0715 0 1 36493 7101 24568 24584 35928 35928 -0.06625786877009432 QPSDQIESIY 10 Unmodified _QPSDQIESIY_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2672119140625 2 590.280043 1178.54553 0.35161 0.00020755 -3.7543 -0.0022161 -3.4027 -0.0020086 590.7775895735275 73.211 0.77202 73.211 72.783 73.555 0 37 19 3 0 0 0 0.85223 1 14269 14269 13.042 7.3106 1 3364300 + 36494 19081 24569 24585 35929 35929 -0.03659793698375324 QPSEAQQPA 9 Unmodified _QPSEAQQPA_ 0 0 0 CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant;CIC|p.P518Rfs*5|2|0.37|ENSG00000079432|chr19:42290317-42290317|C/-|frameshift_variant;CIC|p.P509Hfs*14|2|0.27|ENSG00000079432|chr19:42290289-42290289|C/-|frameshift_variant;CIC|p.A785Pfs*139|1|0.34|ENSG00000079432|chr19:42291117-42291117|G/-|frameshift_variant;CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant;CIC|p.E1288Gfs*56|1|0.3|ENSG00000079432|chr19:42293654-42293655|-/G|frameshift_variant;ENSG00000079432|ENST00000681038|CIC;nc|ENSG00000079432|Q96RK0-2|CIC CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.728759765625 2 478.227613 954.440674 -0.15653 -7.4855E-05 -0.32301 -0.00015447 -0.47953 -0.00022933 478.22762626114076 25.109 0.55497 23.256 23.084 23.638 -1.8534 28 15 3 0 0 0 0.55539 1 4106 4106 16.149 0 1 1126600 36495 560 24570 24586 35930 35930 -0.03836870384282065 QPSEAQQPA 9 Unmodified _QPSEAQQPA_ 0 0 0 CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant;CIC|p.P518Rfs*5|2|0.37|ENSG00000079432|chr19:42290317-42290317|C/-|frameshift_variant;CIC|p.P509Hfs*14|2|0.27|ENSG00000079432|chr19:42290289-42290289|C/-|frameshift_variant;CIC|p.A785Pfs*139|1|0.34|ENSG00000079432|chr19:42291117-42291117|G/-|frameshift_variant;CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant;CIC|p.E1288Gfs*56|1|0.3|ENSG00000079432|chr19:42293654-42293655|-/G|frameshift_variant;ENSG00000079432|ENST00000681038|CIC;nc|ENSG00000079432|Q96RK0-2|CIC CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.227613 954.440674 1.0909 0.00052172 -1.3271 -0.00063465 -0.23615 -0.00011293 478.22704458090203 24.952 0.55695 23.304 23.165 23.722 -1.6482 0.02401 -0.00037156 NaN 16.149 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1193500 36496 560 24570 24586 -0.03836870384282065 QPSINLHSQE 10 Unmodified _QPSINLHSQE_ 0 0 0 ENST00000526955.1_1_11:125255606-125280135:+|nuORF ENST00000526955.1_1_11:125255606-125280135:+|nuORF ENST00000526955.1_1_11:125255606-125280135:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3121337890625 2 576.785827 1151.5571 -1.3277 -0.00076579 -1.4782 -0.00085259 -2.8059 -0.0016184 576.7849995570299 17.338 0.31652 15.824 15.557 15.874 -1.5148 15 8 2 0 0 0 0.91149 1 2514 2514 6.2058 0 1 716730 36497 10922 24571 24587 35931 35931 -0.012615518843858808 QPSKKKRIIY 10 Unmodified _QPSKKKRIIY_ 0 0 0 RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF;RFC1|p.N81Mfs*61|1|0.3|ENSG00000035928|chr4:39342434-39342434|T/-|frameshift_variant RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.77099609375 2 630.892972 1259.77139 NaN NaN NaN NaN NaN NaN NaN 72.402 1 69.091 68.591 69.591 -3.3107 0 0 0 0.22588 1 14110 14110 3.9444 0.3479 1 36498 1169 24572 24588 35932 35932 0.151896200021838 QPSMGRRP 8 Unmodified _QPSMGRRP_ 0 0 0 REV__ENSG00000164236|ENST00000296657|ANKRD33B REV__ENSG00000164236|ENST00000296657|ANKRD33B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 103 1 98.682 98.182 99.182 -4.3208 0 0 0 0.21486 1 19724 19724 0.40072 0 1 + 36499 17663 24573 24589 35933 35933 0.004232097999306461 QPSMGRRP 8 Unmodified _QPSMGRRP_ 0 0 0 REV__ENSG00000164236|ENST00000296657|ANKRD33B REV__ENSG00000164236|ENST00000296657|ANKRD33B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649475097656 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 102.47 1 98.446 97.946 98.946 -4.0212 0 0 0 0.21486 1 19693 19693 0.40072 0 1 + 36500 17663 24573 24589 35934 35934 0.004232097999306461 QPSRPAPY 8 Unmodified _QPSRPAPY_ 0 0 0 REV__TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant REV__TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2390441894531 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 114.76 1 114.76 114.26 115.26 0 0 0 0 0.21039 1 22578 22578 16.942 2.3606 1 + 36501 25502 24574 24590 35935 35935 0.00036345066178000707 QPSSDSFSRA 10 Unmodified _QPSSDSFSRA_ 0 0 0 REV__ENSG00000198883|ENST00000535214|PNMA5 REV__ENSG00000198883|ENST00000535214|PNMA5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2757568359375 2 541.249077 1080.4836 NaN NaN NaN NaN NaN NaN NaN 144.15 1 139.08 138.58 139.58 -5.0671 0 0 0 0.22588 1 27798 27798 6.2058 0.47393 1 + 36502 19473 24575 24591 35936 35936 -0.0534210032685678 QPTDLTWW 8 Unmodified _QPTDLTWW_ 0 0 0 REV__OR5B2|p.F60Sfs*44|1|0.38|ENSG00000172365|chr11:58423083-58423083|A/-|frameshift_variant REV__OR5B2|p.F60Sfs*44|1|0.38|ENSG00000172365|chr11:58423083-58423083|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6934204101562 2 523.750724 1045.4869 NaN NaN NaN NaN NaN NaN NaN 144.48 1 144.48 143.98 144.98 0 0 0 0 0.21486 1 28866 28866 9.3474 0 1 + 36503 24413 24576 24592 35937 35937 -0.03402805482187432 QPTKALES 8 Unmodified _QPTKALES_ 0 0 0 REV__ENSG00000115942|ENST00000234296|ORC2 REV__ENSG00000115942|ENST00000234296|ORC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2358703613281 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.314 1 63.314 62.814 63.814 0 0 0 0 0.21486 1 12173 12173 8.5933 0.68312 1 + 36504 15457 24577 24593 35938 35938 0.019015056264606756 QPTKALES 8 Unmodified _QPTKALES_ 0 0 0 REV__ENSG00000115942|ENST00000234296|ORC2 REV__ENSG00000115942|ENST00000234296|ORC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23492431640625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 85.531 1 85.531 85.031 86.031 0 0 0 0 0.21486 1 16692 16692 12.532 0 1 + 36505 15457 24577 24593 35939 35939 0.019015056264606756 QPTKALES 8 Unmodified _QPTKALES_ 0 0 0 REV__ENSG00000115942|ENST00000234296|ORC2 REV__ENSG00000115942|ENST00000234296|ORC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.236083984375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.542 1 60.126 59.626 60.626 -3.4158 0 0 0 0.21486 1 11871 11871 5.2307 0 1 + 36506 15457 24577 24593 35940 35940 0.019015056264606756 QPTVTDGP 8 Unmodified _QPTVTDGP_ 0 0 0 REV__ENST00000526183.5_1_8:145725999-145727283:+|nuORF REV__ENST00000526183.5_1_8:145725999-145727283:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 407.7939147949219 2 407.7007 813.386848 NaN NaN NaN NaN NaN NaN NaN 41.312 1 38.677 38.177 39.177 -2.6348 0 0 0 0.23366 1 7712 7712 0.25148 0.18749 1 + 36507 17444 24578 24594 35941 35941 -0.02731042816003537 QPVAEAAQ 8 Unmodified _QPVAEAAQ_ 0 0 0 ENST00000301015.13_2_16:88800318-88802577:-|nuORF ENST00000301015.13_2_16:88800318-88802577:-|nuORF ENST00000301015.13_2_16:88800318-88802577:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3629760742188 1 813.410108 812.402832 0.48076 0.00039105 0.074089 6.0265E-05 0.55485 0.00045132 813.4100882528329 32.753 0.69939 30.606 30.306 31.006 -2.1468 45 19 3 0 0 0 0.69031 2 5667 5667;5684 15.847 3.3156 1 6546600 36508 8552 24579 24595 35942;35943 35942 -0.01087336579098519 QPVEGEERHA 10 Unmodified _QPVEGEERHA_ 0 0 0 REV__ENST00000563352.1_1_16:56940940-56947361:+|nuORF REV__ENST00000563352.1_1_16:56940940-56947361:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3363037109375 2 576.275626 1150.5367 NaN NaN NaN NaN NaN NaN NaN 141.09 1 136.22 135.72 136.72 -4.8678 0 0 0 0.22588 1 27221 27221 7.609 0.31972 1 + 36509 23078 24580 24596 35944 35944 -0.03254722544170363 QPVFCVSY 8 Unmodified _QPVFCVSY_ 0 0 0 REV__FLNC|p.R2277C|1|0.47|ENSG00000128591|chr7:128854514-128854514|C/T|missense_variant REV__FLNC|p.R2277C|1|0.47|ENSG00000128591|chr7:128854514-128854514|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 471.7242431640625 2 471.723121 941.431689 NaN NaN NaN NaN NaN NaN NaN 102.79 1 98.472 97.972 98.972 -4.3208 0 0 0 0.23025 1 19681 19681 0.68139 0.55853 1 + 36510 23539 24581 24597 35945 35945 -0.041369352743117815 QPVGAQPLP 9 Unmodified _QPVGAQPLP_ 0 0 0 ENST00000300682.14_2_17:77078803-77082428:+|nuORF ENST00000300682.14_2_17:77078803-77082428:+|nuORF ENST00000300682.14_2_17:77078803-77082428:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7578430175781 2 453.75581 905.497067 NaN NaN NaN NaN NaN NaN NaN 162.34 1 157.55 157.05 158.05 -4.7898 0 0 0 0.21469 1 32303 32303 19.257 1.122 1 36511 8547 24582 24598 35946 35946 0.04053802243049631 QPVGSHQP 8 Unmodified _QPVGSHQP_ 0 0 0 ENST00000592456.1_1_17:76167504-76168014:+|nuORF ENST00000592456.1_1_17:76167504-76168014:+|nuORF ENST00000592456.1_1_17:76167504-76168014:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2431640625 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 21.356 1 19.972 19.472 20.472 -1.3847 0 0 0 0.21323 1 3357 3357 14.582 0 1 36512 11636 24583 24599 35947 35947 -0.01620514484955038 QPVRTVRLHLK 11 Unmodified _QPVRTVRLHLK_ 0 0 0 ENST00000479499.1_1_1:183079785-183086097:+|nuORF ENST00000479499.1_1_1:183079785-183086097:+|nuORF ENST00000479499.1_1_1:183079785-183086097:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 673.9506225585938 2 673.922595 1345.83064 NaN NaN NaN NaN NaN NaN NaN 168.27 1 168.27 167.77 168.77 0 0 0 0 0.23429 1 34446 34446 4.897 1.3005 1 36513 10341 24584 24600 35948 35948 0.1715551601637344 QPVSHKGY 8 Unmodified _QPVSHKGY_ 0 0 0 REV__LTN1|p.S725Ifs*7|1|0.06|ENSG00000198862|chr21:28960696-28960697|-/ATGTTAAAAA|frameshift_variant REV__LTN1|p.S725Ifs*7|1|0.06|ENSG00000198862|chr21:28960696-28960697|-/ATGTTAAAAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.238037109375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 125.65 1 121.05 120.55 121.55 -4.5984 0 0 0 0.21486 1 24772 24772 12.532 0 1 + 36514 19465 24585 24601 35949 35949 0.0003634506618936939 QPVTYYKRPVQ 11 Unmodified _QPVTYYKRPVQ_ 0 0 0 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2304992675781 3 460.254105 1377.74048 0.31301 0.00014406 -0.18236 -8.3931E-05 0.13065 6.0134E-05 460.25399586630243 117.09 0.7581 112.51 112.26 113.02 -4.5815 53 21 4 0 0 0 0.77537 1 22441 22441 6.6235 0.75532 1 2966400 36515 3407 24586 24602 35950 35950 0.06672421897269487 QPWLEIPP 8 Unmodified _QPWLEIPP_ 0 0 0 OR2B2|p.Y252Mfs*34|1|0.34|ENSG00000168131|chr6:27911566-27911566|A/-|frameshift_variant;ENSG00000168131|ENST00000303324|OR2B2 OR2B2|p.Y252Mfs*34|1|0.34|ENSG00000168131|chr6:27911566-27911566|A/-|frameshift_variant OR2B2|p.Y252Mfs*34|1|0.34|ENSG00000168131|chr6:27911566-27911566|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26513671875 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 63.278 1 63.278 62.778 63.778 0 0 0 0 0.23366 1 12166 12166 0.62683 0 1 36516 5881 24587 24603 35951 35951 0.02734972902840127 QPWSCCCC 8 Unmodified _QPWSCCCC_ 0 0 0 REV__ENSG00000188056|ENST00000341495|TREML4 REV__ENSG00000188056|ENST00000341495|TREML4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2393798828125 2 465.142269 928.269985 NaN NaN NaN NaN NaN NaN NaN 84.094 1 84.094 83.594 84.594 0 0 0 0 0.21486 1 16396 16396 2.5775 0.27475 1 + 36517 19130 24588 24604 35952 35952 -0.19701886894927156 QPWSCCCCL 9 Unmodified _QPWSCCCCL_ 0 0 0 REV__ENSG00000188056|ENST00000341495|TREML4 REV__ENSG00000188056|ENST00000341495|TREML4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2598266601562 2 521.684301 1041.35405 0.34463 0.00017979 -2.6779 -0.001397 -2.3332 -0.0012172 521.6831927542944 143.68 0.21152 138.78 138.65 138.86 -4.8982 6 5 2 0 0 0 0.87888 1 27727 27727 2.0598 1.3694 1 2509400 + 36518 19130 24589 24605 35953 35953 -0.1649735579803746 QPWWPNTPG 9 Unmodified _QPWWPNTPG_ 0 0 0 ENST00000491449.5_1_22:50658476-50664613:-|nuORF;nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6 ENST00000491449.5_1_22:50658476-50664613:-|nuORF ENST00000491449.5_1_22:50658476-50664613:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2673950195312 2 541.756341 1081.49813 -0.12889 -6.9826E-05 -0.28688 -0.00015542 -0.41577 -0.00022524 541.7559950756065 21.51 0.2769 20.125 19.969 20.246 -1.3847 13 7 2 0 0 0 0.81703 1 3407 3407 14.838 6.0929 1 857700 36519 3509 24590 24606 35954 35954 -0.03935983388078057 QPYASRIPY 9 Unmodified _QPYASRIPY_ 0 0 0 REV__ENSG00000054965|ENST00000356467|FAM168A REV__ENSG00000054965|ENST00000356467|FAM168A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7772827148438 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 164.33 1 159.54 159.04 160.04 -4.7898 0 0 0 0.23508 1 32833 32833 10.074 0 1 + 36520 14110 24591 24607 35955 35955 0.012608588175226032 QPYASRIPY 9 Unmodified _QPYASRIPY_ 0 0 0 REV__ENSG00000054965|ENST00000356467|FAM168A REV__ENSG00000054965|ENST00000356467|FAM168A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7853393554688 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 124.85 1 120.08 119.58 120.58 -4.7681 0 0 0 0.18525 1 23975 23975 0.40827 0 1 + 36521 14110 24591 24607 35956 35956 0.012608588175226032 QPYFETLFHK 10 Unmodified _QPYFETLFHK_ 0 0 0 nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant nc|ENSG00000001626|P13569-2|CFTR nc|ENSG00000001626|P13569-2|CFTR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21673583984375 3 437.224034 1308.65027 -0.23159 -0.00010126 0.50602 0.00022125 0.27443 0.00011999 437.22434413587496 21.304 0.21189 19.919 19.757 19.969 -1.3847 8 5 2 0 0 0 0.744 1 3351 3351 3.5871 0 1 450610 36522 958 24592 24608 35957 35957 0.008293725688190534 QPYFQTLPV 9 Unmodified _QPYFQTLPV_ 0 0 0 ENSG00000101425|ENST00000642449|BPI;nc|ENSG00000101425|P17213|BPI ENSG00000101425|ENST00000642449|BPI ENSG00000101425|ENST00000642449|BPI MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7919311523438 2 546.78985 1091.56515 -0.28559 -0.00015616 -0.20191 -0.0001104 -0.4875 -0.00026656 546.7897826775607 107.89 0.97192 103.57 103.03 104.01 -4.32 69 27 3 0 0 0 0.34411 1 21291 21291 29.082 1.4528 1 44829000 36523 2066 24593 24609 35958 35958 0.023026271030403223 QPYFQTLPV 9 Unmodified _QPYFQTLPV_ 0 0 0 ENSG00000101425|ENST00000642449|BPI;nc|ENSG00000101425|P17213|BPI ENSG00000101425|ENST00000642449|BPI ENSG00000101425|ENST00000642449|BPI MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7919311523438 2 546.78985 1091.56515 -0.060036 -3.2827E-05 -0.47286 -0.00025856 -0.5329 -0.00029138 546.7896364205251 108.06 0.92885 103.65 103.12 104.05 -4.4121 70 26 3 0 0 0 0.36931 1 20758 20758 27.629 4.8538 1 43712000 36524 2066 24593 24609 35959 35959 0.023026271030403223 QPYKFKFE 8 Unmodified _QPYKFKFE_ 0 0 0 REV__ENSG00000138356|ENST00000374700|AOX1 REV__ENSG00000138356|ENST00000374700|AOX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.794677734375 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 142.62 1 142.62 142.12 143.12 0 0 0 0 0.21486 1 28438 28438 11.64 3.7301 1 + 36525 16453 24594 24610 35960 35960 0.01522644448596111 QPYQRRFA 8 Unmodified _QPYQRRFA_ 0 0 0 ENST00000254043.7_1_17:39675863-39676046:-|nuORF ENST00000254043.7_1_17:39675863-39676046:-|nuORF ENST00000254043.7_1_17:39675863-39676046:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2787475585938 2 533.283057 1064.55156 NaN NaN NaN NaN NaN NaN NaN 135.12 1 135.12 134.62 135.62 0 0 0 0 0.21486 1 26760 26760 12.532 0.89125 1 36526 8242 24595 24611 35961 35961 0.021868141144750552 QPYRHKIH 8 Unmodified _QPYRHKIH_ 0 0 0 REV__nc|ENSG00000143994|Q96SE0-3|ABHD1 REV__nc|ENSG00000143994|Q96SE0-3|ABHD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201171875 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 176.36 1 176.36 175.86 176.86 0 0 0 0 0.21486 1 36536 36536 0.40072 0 1 + 36527 16762 24596 24612 35962 35962 0.047508068684237514 QPYRHKIH 8 Unmodified _QPYRHKIH_ 0 0 0 REV__nc|ENSG00000143994|Q96SE0-3|ABHD1 REV__nc|ENSG00000143994|Q96SE0-3|ABHD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016906738281 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 176.47 1 171.68 171.18 172.18 -4.7898 0 0 0 0.21486 1 36085 36085 0.40072 0 1 + 36528 16762 24596 24612 35963 35963 0.047508068684237514 QPYRHKIH 8 Unmodified _QPYRHKIH_ 0 0 0 REV__nc|ENSG00000143994|Q96SE0-3|ABHD1 REV__nc|ENSG00000143994|Q96SE0-3|ABHD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2124328613281 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 176.58 1 171.79 171.29 172.29 -4.7898 0 0 0 0.21486 1 36108 36108 0.40072 0 1 + 36529 16762 24596 24612 35964 35964 0.047508068684237514 QPYWCHRHWRK 11 Unmodified _QPYWCHRHWRK_ 0 0 0 REV__ENST00000360093.7_1_2:166027051-166032921:-|nuORF REV__ENST00000360093.7_1_2:166027051-166032921:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2621459960938 3 532.929961 1595.76805 NaN NaN NaN NaN NaN NaN NaN 21.63 1 20.156 19.656 20.656 -1.4742 0 0 0 0.23698 1 3666 3666 1.3296 0.82369 1 + 36530 20860 24597 24613 35965 35965 -0.005999533235126364 QQACRPHNL 9 Unmodified _QQACRPHNL_ 0 0 0 ENSG00000183628|ENST00000331444|DGCR6;ENSG00000128185|ENST00000248879|DGCR6L ENSG00000183628|ENST00000331444|DGCR6 ENSG00000183628|ENST00000331444|DGCR6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.268798828125 2 533.764175 1065.5138 -0.17714 -9.4552E-05 1.058 0.0005647 0.88081 0.00047015 533.7647450768475 105.29 0.84591 101.03 100.57 101.41 -4.2638 47 23 3 0 0 0 0.54076 1 20698 20698 26.884 7.6267 1 3948900 36531 3510 24598 24614 35966 35966 -0.016340201426601197 QQCAKRNSYY 10 Unmodified _QQCAKRNSYY_ 0 0 0 ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant;ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14 ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.769287109375 2 630.793129 1259.5717 NaN NaN NaN NaN NaN NaN NaN 116.34 1 111.86 111.36 112.36 -4.486 0 0 0 0.22588 1 22940 22940 10.824 0.024421 1 36532 62 24599 24615 35967 35967 -0.04769803007866358 QQCLCMSH 8 Unmodified _QQCLCMSH_ 0 0 0 HHLA1|p.Q481H|1|0.07|ENSG00000132297|chr8:132071366-132071366|C/G|missense_variant HHLA1|p.Q481H|1|0.07|ENSG00000132297|chr8:132071366-132071366|C/G|missense_variant HHLA1|p.Q481H|1|0.07|ENSG00000132297|chr8:132071366-132071366|C/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1699523925781 3 317.127802 948.361578 -0.19773 -6.2707E-05 0.88578 0.00028091 0.68805 0.0002182 317.1278954964612 109.76 0.57278 105.31 104.95 105.52 -4.4518 27 15 3 0 0 0 1.0281 1 21021 21021 0 0 1 894710 36533 11904 24600 24616 35968 35968 -0.11466880206069163 QQCLCMSH 8 Unmodified _QQCLCMSH_ 0 0 0 HHLA1|p.Q481H|1|0.07|ENSG00000132297|chr8:132071366-132071366|C/G|missense_variant HHLA1|p.Q481H|1|0.07|ENSG00000132297|chr8:132071366-132071366|C/G|missense_variant HHLA1|p.Q481H|1|0.07|ENSG00000132297|chr8:132071366-132071366|C/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 317.127802 948.361578 -0.70172 -0.00022254 0.98578 0.00031262 0.28406 9.0082E-05 317.1280241211516 109.6 0.65997 105.22 104.92 105.58 -4.3776 -0.10295 0.00024711 NaN 0 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1147200 36534 11904 24600 24616 -0.11466880206069163 QQCLCMSH 8 Unmodified _QQCLCMSH_ 0 0 0 HHLA1|p.Q481H|1|0.07|ENSG00000132297|chr8:132071366-132071366|C/G|missense_variant HHLA1|p.Q481H|1|0.07|ENSG00000132297|chr8:132071366-132071366|C/G|missense_variant HHLA1|p.Q481H|1|0.07|ENSG00000132297|chr8:132071366-132071366|C/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 317.127802 948.361578 -0.034098 -1.0813E-05 0.2548 8.0805E-05 0.2207 6.9991E-05 317.12780359174343 109.62 0.59724 105.44 104.98 105.58 -4.1826 0.11804 -0.00044832 NaN 0 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 753140 36535 11904 24600 24616 -0.11466880206069163 QQCWERDGG 9 Unmodified _QQCWERDGG_ 0 0 0 nc|ENSG00000185347|Q86SX3-4|TEDC1;nc|ENSG00000185347|Q86SX3-5|TEDC1;nc|ENSG00000185347|Q86SX3-3|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENSG00000185347|ENST00000392523|TEDC1 nc|ENSG00000185347|Q86SX3-4|TEDC1 nc|ENSG00000185347|Q86SX3-4|TEDC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2066345214844 3 360.15054 1077.42979 NaN NaN NaN NaN NaN NaN NaN 13.733 1 12.522 12.022 13.022 -1.2106 0 0 0 0.23508 1 1763 1763 0.26902 0 1 36536 6984 24601 24617 35969 35969 -0.10582596030212699 QQEDESQSFY 10 Unmodified _QQEDESQSFY_ 0 0 0 PASD1|p.V650Rfs*13|1|0.16|ENSG00000166049|chrX:151673952-151673953|-/C|frameshift_variant;ENSG00000166049|ENST00000370357|PASD1 PASD1|p.V650Rfs*13|1|0.16|ENSG00000166049|chrX:151673952-151673953|-/C|frameshift_variant PASD1|p.V650Rfs*13|1|0.16|ENSG00000166049|chrX:151673952-151673953|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7669677734375 2 630.754389 1259.49423 NaN NaN NaN NaN NaN NaN NaN 135.6 1 130.96 130.46 131.46 -4.6399 0 0 0 2.8426 1 26747 26747 0.26539 0.19213 1 36537 5685 24602 24618 35970 35970 -0.12514162463071443 QQEDESQSFY 10 Unmodified _QQEDESQSFY_ 0 0 0 PASD1|p.V650Rfs*13|1|0.16|ENSG00000166049|chrX:151673952-151673953|-/C|frameshift_variant;ENSG00000166049|ENST00000370357|PASD1 PASD1|p.V650Rfs*13|1|0.16|ENSG00000166049|chrX:151673952-151673953|-/C|frameshift_variant PASD1|p.V650Rfs*13|1|0.16|ENSG00000166049|chrX:151673952-151673953|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7513427734375 2 630.754389 1259.49423 NaN NaN NaN NaN NaN NaN NaN 95.832 1 91.951 91.451 92.451 -3.881 0 0 0 0.22588 1 18390 18390 6.7232 1.4925 1 36538 5685 24602 24618 35971 35971 -0.12514162463071443 QQEKVERQQEA 11 Unmodified _QQEKVERQQEA_ 0 0 0 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2339172363281 3 458.232028 1371.67426 NaN NaN NaN NaN NaN NaN NaN 31.256 1 29.23 28.73 29.73 -2.0264 0 0 0 0.22632 1 5390 5390 1.4074 0.82212 1 36539 7387 24603 24619 35972 35972 0.003285612645868241 QQELEVGI 8 Unmodified _QQELEVGI_ 0 0 0 UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22509765625 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 43.217 1 40.611 40.111 41.111 -2.606 0 0 0 0.22674 1 7795 7795 14.838 14.322 1 36540 4942 24604 24620 35973 35973 0.010254882809135779 QQERGGQGP 9 Unmodified _QQERGGQGP_ 0 0 0 nc|ENSG00000106336|O75426-3|FBXO24 nc|ENSG00000106336|O75426-3|FBXO24 nc|ENSG00000106336|O75426-3|FBXO24 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7370910644531 2 478.730855 955.447156 NaN NaN NaN NaN NaN NaN NaN 18.369 1 16.854 16.354 17.354 -1.5148 0 0 0 0.23508 1 2719 2719 6.7232 0.36906 1 36541 12276 24605 24621 35974 35974 -0.03234932432883397 QQFHLRQS 8 Unmodified _QQFHLRQS_ 0 0 0 REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2723388671875 2 522.27269 1042.53083 NaN NaN NaN NaN NaN NaN NaN 24.756 1 24.756 24.256 25.256 0 0 0 0 0.23811 1 4272 4272 0.12286 0 1 + 36542 16269 24606 24622 35975 35975 0.01126223734809173 QQFLHKFKKCS 11 Unmodified _QQFLHKFKKCS_ 0 0 0 REV__ENSG00000198690|ENST00000362065|FAN1 REV__ENSG00000198690|ENST00000362065|FAN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2503662109375 3 465.251818 1392.73363 NaN NaN NaN NaN NaN NaN NaN 164.64 1 159.85 159.35 160.35 -4.7898 0 0 0 0.22632 1 32913 32913 0.172 0.14579 1 + 36543 19435 24607 24623 35976 35976 0.05296785745053967 QQFYAGQL 8 Unmodified _QQFYAGQL_ 0 0 0 REV__ENSG00000136367|ENST00000419474|ZFHX2 REV__ENSG00000136367|ENST00000419474|ZFHX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74188232421875 2 477.737617 953.460681 0.34311 0.00016392 -0.21582 -0.0001031 0.12729 6.0812E-05 477.7374768408502 147.99 0.62805 142.93 142.6 143.22 -5.0595 37 17 3 0 0 0 0.53444 1 28644 28644 26.341 1.6674 1 3136700 + 36544 16325 24608 24624 35977 35977 -0.017910746536699662 QQFYAGQL 8 Unmodified _QQFYAGQL_ 0 0 0 REV__ENSG00000136367|ENST00000419474|ZFHX2 REV__ENSG00000136367|ENST00000419474|ZFHX2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.737617 953.460681 -0.090275 -4.3128E-05 -0.39485 -0.00018864 -0.48513 -0.00023176 477.7374602480402 142.78 0.62665 142.78 142.48 143.1 0 -0.12263 -0.00022439 NaN 26.341 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4883100 + 36545 16325 24608 24624 -0.017910746536699662 QQFYAGQL 8 Unmodified _QQFYAGQL_ 0 0 0 REV__ENSG00000136367|ENST00000419474|ZFHX2 REV__ENSG00000136367|ENST00000419474|ZFHX2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.737617 953.460681 0.090997 4.3473E-05 0.073136 3.494E-05 0.16413 7.8412E-05 477.7375953232495 147.65 0.64075 142.95 142.63 143.27 -4.7095 0.038876 0.00022276 NaN 26.341 43 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6495400 + 36546 16325 24608 24624 -0.017910746536699662 QQFYAGQL 8 Unmodified _QQFYAGQL_ 0 0 0 REV__ENSG00000136367|ENST00000419474|ZFHX2 REV__ENSG00000136367|ENST00000419474|ZFHX2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.737617 953.460681 0.10547 5.0389E-05 -0.08413 -4.0192E-05 0.021344 1.0197E-05 477.73746788941156 148.12 0.66913 142.97 142.62 143.29 -5.1558 0.059116 7.25E-05 NaN 26.341 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 4111200 + 36547 16325 24608 24624 -0.017910746536699662 QQGAVTLETT 10 Unmodified _QQGAVTLETT_ 0 0 0 nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76 nc|ENSG00000065029|P36508-2|ZNF76 nc|ENSG00000065029|P36508-2|ZNF76 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.0740661621094 3 349.848744 1046.5244 -0.61701 -0.00021586 -2.7042 -0.00094607 -3.3212 -0.0011619 350.1814657634283 106.2 0.38751 101.94 101.76 102.15 -4.2638 14 10 2 0 0 0 0.76216 1 20930 20930 1.9064 0.71303 1 407970 36548 1349 24609 24625 35978 35978 0.0030024099276033667 QQGAVTLETT 10 Unmodified _QQGAVTLETT_ 0 0 0 nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76 nc|ENSG00000065029|P36508-2|ZNF76 nc|ENSG00000065029|P36508-2|ZNF76 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 349.848744 1046.5244 0.047468 1.6607E-05 -2.6229 -0.00091761 -2.5754 -0.000901 349.8481884796169 105.98 0.20291 101.89 101.78 101.99 -4.0913 -0.024241 5.0204E-05 NaN 1.9064 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 382630 36549 1349 24609 24625 0.0030024099276033667 QQHEEKMKDLR 11 Unmodified _QQHEEKMKDLR_ 0 0 0 REV__ENSG00000110274|ENST00000278935|CEP164 REV__ENSG00000110274|ENST00000278935|CEP164 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2455749511719 3 481.245392 1440.71435 NaN NaN NaN NaN NaN NaN NaN 115.28 1 115.28 114.78 115.78 0 0 0 0 0.22632 1 22687 22687 1.4551 0 1 + 36550 15196 24610 24626 35979 35979 0.011617846634862872 QQHFRQTWIYY 11 Unmodified _QQHFRQTWIYY_ 0 0 0 TBX3|p.E195Gfs*32|1|0.51|ENSG00000135111|chr12:114680952-114680953|-/C|frameshift_variant TBX3|p.E195Gfs*32|1|0.51|ENSG00000135111|chr12:114680952-114680953|-/C|frameshift_variant TBX3|p.E195Gfs*32|1|0.51|ENSG00000135111|chr12:114680952-114680953|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3851928710938 2 785.3835 1568.75245 NaN NaN NaN NaN NaN NaN NaN 103.66 1 99.605 99.105 100.1 -4.0543 0 0 0 0.23698 1 19930 19930 1.4819 0 1 36551 25825 24611 24627 35980 35980 -0.009179613595051705 QQIAKKLNK 9 Unmodified _QQIAKKLNK_ 0 0 0 REV__ENST00000367478.8_1_1:186332511-186332559:-|nuORF REV__ENST00000367478.8_1_1:186332511-186332559:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5599060058594 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 28.456 1 26.5 26 27 -1.9561 0 0 0 0.19687 1 5090 5090 8.1555 6.9407 1 + 36552 20921 24612 24628 35981 35981 0.1287340001395023 QQIDRVVEV 9 Unmodified _QQIDRVVEV_ 0 0 0 nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1;CDKAL1|p.G173Nfs*4|1|0.13|ENSG00000145996|chr6:20758638-20758639|-/AAAAAATATCCTA|frameshift_variant;CDKAL1|p.A192Nfs*10|1|0.08|ENSG00000145996|chr6:20781199-20781200|-/AAAC|frameshift_variant;CDKAL1|p.M405Nfs*27|1|0.36|ENSG00000145996|chr6:21065200-21065201|-/A|frameshift_variant nc|ENSG00000145996|Q5VV42-2|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7908935546875 2 543.301113 1084.58767 0.57978 0.000315 -0.86958 -0.00047244 -0.2898 -0.00015745 543.3006695367463 76.542 0.6348 76.542 76.167 76.802 0 23 17 2 0 0 0 0.25976 1 14854 14854 17.113 2.7075 1 1517600 36553 4633 24613 24629 35982 35982 0.048762265006644157 QQIDRVVEV 9 Unmodified _QQIDRVVEV_ 0 0 0 nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1;CDKAL1|p.G173Nfs*4|1|0.13|ENSG00000145996|chr6:20758638-20758639|-/AAAAAATATCCTA|frameshift_variant;CDKAL1|p.A192Nfs*10|1|0.08|ENSG00000145996|chr6:20781199-20781200|-/AAAC|frameshift_variant;CDKAL1|p.M405Nfs*27|1|0.36|ENSG00000145996|chr6:21065200-21065201|-/A|frameshift_variant nc|ENSG00000145996|Q5VV42-2|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7696533203125 2 543.301113 1084.58767 0.26015 0.00014134 -0.21799 -0.00011844 0.042157 2.2904E-05 543.3009961066381 79.572 0.49773 76.062 75.979 76.476 -3.5102 20 13 2 0 0 0 0.66076 1 15564 15564 41.956 1.9982 1 1479800 36554 4633 24613 24629 35983 35983 0.048762265006644157 QQISSLYTF 9 Unmodified _QQISSLYTF_ 0 0 0 nc|ENSG00000188820|Q5R3K3-2|CALHM6;ENSG00000188820|ENST00000368605|CALHM6 nc|ENSG00000188820|Q5R3K3-2|CALHM6 nc|ENSG00000188820|Q5R3K3-2|CALHM6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.779296875 2 543.776939 1085.53933 0.5808 0.00031582 -3.31 -0.0017999 -2.7292 -0.0014841 544.2751144150842 102.11 1.2848 98.088 97.598 98.882 -4.0212 73 36 3 0 0 0 0.31728 1 19728 19728 2.6312 0 1 4736900 36555 7199 24614 24630 35984 35984 -2.2671392343909247E-05 QQKLVTIM 8 Unmodified _QQKLVTIM_ 0 0 0 REV__ENSG00000171495|ENST00000399564|MROH2B REV__ENSG00000171495|ENST00000399564|MROH2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7843017578125 2 480.78097 959.547388 -0.22484 -0.0001081 0.32769 0.00015755 0.10284 4.9445E-05 480.7810621627617 111.86 0.9481 107.43 106.93 107.87 -4.4231 65 26 3 0 0 0 0.49114 1 22060 22060 28.487 0.85804 1 10389000 + 36556 18230 24615 24631 35985 35985 0.0659958857655738 QQKLVTIM 8 Unmodified _QQKLVTIM_ 0 0 0 REV__ENSG00000171495|ENST00000399564|MROH2B REV__ENSG00000171495|ENST00000399564|MROH2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7786560058594 2 480.78097 959.547388 -0.031598 -1.5192E-05 0.2043 9.8225E-05 0.1727 8.3033E-05 480.78101980536854 111.98 0.90622 107.47 106.98 107.89 -4.5079 64 25 3 0 0 0 0.31517 1 21502 21502 36.044 1.6425 1 8240700 + 36557 18230 24615 24631 35986 35986 0.0659958857655738 QQKPIEPRREL 11 Unmodified _QQKPIEPRREL_ 0 0 0 ENST00000586872.5_1_19:16263808-16265310:+|nuORF;nc|ENSG00000196684|Q96JZ2-2|HSH2D;ENSG00000196684|ENST00000613986|HSH2D ENST00000586872.5_1_19:16263808-16265310:+|nuORF ENST00000586872.5_1_19:16263808-16265310:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2486572265625 3 465.268525 1392.78375 NaN NaN NaN NaN NaN NaN NaN 140.08 1 135.23 134.73 135.73 -4.8492 0 0 0 0.22632 1 27010 27010 0.172 0 1 36558 7301 24616 24632 35987 35987 0.103066116745822 QQKQLDWRPER 11 Unmodified _QQKQLDWRPER_ 0 0 0 HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant;HTATSF1|p.V610Cfs*2|1|0.32|ENSG00000102241|chrX:136511568-136511568|A/-|frameshift_variant;ENSG00000102241|ENST00000218364|HTATSF1;HTATSF1|p.T358Pfs*9|1|0.2|ENSG00000102241|chrX:136510815-136510815|A/-|frameshift_variant HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3893432617188 2 742.391856 1482.76916 NaN NaN NaN NaN NaN NaN NaN 116.5 1 111.92 111.42 112.42 -4.5815 0 0 0 0.22632 1 22358 22358 0.50596 0 1 36559 2120 24617 24633 35988 35988 0.0470853952640482 QQLLCPSAP 9 Unmodified _QQLLCPSAP_ 0 0 0 REV__INO80E|p.G103Afs*28|1|0.41|ENSG00000169592|chr16:30000947-30000947|G/-|frameshift_variant REV__INO80E|p.G103Afs*28|1|0.41|ENSG00000169592|chr16:30000947-30000947|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7236633300781 2 478.747127 955.479702 NaN NaN NaN NaN NaN NaN NaN 41.156 1 38.666 38.166 39.166 -2.4896 0 0 0 0.22251 1 7381 7381 16.942 1.0951 1 + 36560 23662 24618 24634 35989 35989 0.0001813864572568491 QQLLLTTL 8 Unmodified _QQLLLTTL_ 0 0 0 UQCC3|p.A62T|1|0.08|ENSG00000204922|chr11:62672016-62672016|G/A|missense_variant UQCC3|p.A62T|1|0.08|ENSG00000204922|chr11:62672016-62672016|G/A|missense_variant UQCC3|p.A62T|1|0.08|ENSG00000204922|chr11:62672016-62672016|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2480163574219 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 176.7 1 171.91 171.41 172.41 -4.7898 0 0 0 0.2396 1 36135 36135 0.12286 0 1 36561 26555 24619 24635 35990 35990 0.09219528591370363 QQMLAQAYAGY 11 Unmodified _QQMLAQAYAGY_ 0 0 0 REV__CELF4|p.P346Hfs*54|2|0.22|ENSG00000101489|chr18:37270830-37270830|G/-|frameshift_variant REV__CELF4|p.P346Hfs*54|2|0.22|ENSG00000101489|chr18:37270830-37270830|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.770751953125 2 622.29243 1242.57031 0.57102 0.00035534 -0.95591 -0.00059486 -0.3849 -0.00023952 622.2915080018577 90.903 0.51935 86.809 86.532 87.051 -4.0946 24 14 2 0 0 0 0.78079 1 17341 17341 6.2058 0 1 2400900 + 36562 13362 24620 24636 35991 35991 -0.04127437096644826 QQMRAAVPW 9 Unmodified _QQMRAAVPW_ 0 0 0 ENST00000562482.1_1_16:1364025-1364539:+|nuORF ENST00000562482.1_1_16:1364025-1364539:+|nuORF ENST00000562482.1_1_16:1364025-1364539:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7841186523438 2 543.779293 1085.54403 NaN NaN NaN NaN NaN NaN NaN 147.72 1 142.66 142.16 143.16 -5.0595 0 0 0 0.19632 1 28603 28603 0.073264 0 1 36563 11316 24621 24637 35992 35992 0.004683385225234815 QQNRIVILNY 10 Unmodified _QQNRIVILNY_ 0 0 0 REV__MREG|p.A142Lfs*6|1|0.22|ENSG00000118242|chr2:215945661-215945661|C/-|frameshift_variant REV__MREG|p.A142Lfs*6|1|0.22|ENSG00000118242|chr2:215945661-215945661|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7515258789062 2 630.856586 1259.69862 NaN NaN NaN NaN NaN NaN NaN 86.842 1 83.113 82.613 83.613 -3.7289 0 0 0 0.22588 1 16611 16611 3.9444 0.3479 1 + 36564 15545 24622 24638 35993 35993 0.07915866208759326 QQNRSLSN 8 Unmodified _QQNRSLSN_ 0 0 0 REV__ENSG00000164972|ENST00000297623|C9orf24 REV__ENSG00000164972|ENST00000297623|C9orf24 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.16009521484375 3 316.161545 945.462806 NaN NaN NaN NaN NaN NaN NaN 20.593 1 19.208 18.708 19.708 -1.3847 0 0 0 0.21486 1 3201 3201 1.4819 0.28856 1 + 36565 17732 24623 24639 35994 35994 -0.012106459158644611 QQNRSLSN 8 Unmodified _QQNRSLSN_ 0 0 0 REV__ENSG00000164972|ENST00000297623|C9orf24 REV__ENSG00000164972|ENST00000297623|C9orf24 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.16558837890625 3 316.161545 945.462806 NaN NaN NaN NaN NaN NaN NaN 21.726 1 20.341 19.841 20.841 -1.3847 0 0 0 0.21486 1 3431 3431 1.4819 0.28856 1 + 36566 17732 24623 24639 35995 35995 -0.012106459158644611 QQPFFTRSA 9 Unmodified _QQPFFTRSA_ 0 0 0 REV__nc|ENSG00000214694|A8MVX0|ARHGEF33 REV__nc|ENSG00000214694|A8MVX0|ARHGEF33 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2785034179688 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 142.53 1 142.53 142.03 143.03 0 0 0 0 0.19652 1 28417 28417 0.073264 0.029476 1 + 36567 19673 24624 24640 35996 35996 -0.0018031184229130304 QQPFFTRSA 9 Unmodified _QQPFFTRSA_ 0 0 0 REV__nc|ENSG00000214694|A8MVX0|ARHGEF33 REV__nc|ENSG00000214694|A8MVX0|ARHGEF33 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2718505859375 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 145.99 1 140.88 140.38 141.38 -5.1108 0 0 0 0.19652 1 28227 28227 0.073264 0.029476 1 + 36568 19673 24624 24640 35997 35997 -0.0018031184229130304 QQPLEPLAQK 10 Unmodified _QQPLEPLAQK_ 0 0 0 ZNF469|p.D3286Tfs*124|1|0.31|ENSG00000225614|chr16:88437405-88437405|C/-|frameshift_variant;ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant;ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant;ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant;ZNF469|p.R3818Gfs*95|1|0.46|ENSG00000225614|chr16:88439000-88439000|C/-|frameshift_variant;ENSG00000225614|ENST00000565624|ZNF469 ZNF469|p.D3286Tfs*124|1|0.31|ENSG00000225614|chr16:88437405-88437405|C/-|frameshift_variant ZNF469|p.D3286Tfs*124|1|0.31|ENSG00000225614|chr16:88437405-88437405|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.0362548828125 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 171.19 1 166.28 165.78 166.78 -4.9149 0 0 0 2.8426 1 33879 33879 0.84494 0.57955 1 36569 7786 24625 24641 35998 35998 0.06533086051808823 QQPMHQKPRYR 11 Unmodified _QQPMHQKPRYR_ 0 0 0 ENSG00000087903|ENST00000303657|RFX2;nc|ENSG00000087903|P48378-2|RFX2;ENST00000588021.5_1_19:6007990-6026242:-|nuORF ENSG00000087903|ENST00000303657|RFX2 ENSG00000087903|ENST00000303657|RFX2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2588806152344 3 490.257855 1467.75174 NaN NaN NaN NaN NaN NaN NaN 80.741 1 76.902 76.402 77.402 -3.8392 0 0 0 0.22632 1 15328 15328 1.4551 0 1 36570 1721 24626 24642 35999 35999 0.0365692071977719 QQPMQTPPHS 10 Unmodified _QQPMQTPPHS_ 0 0 0 KAT6B|p.G2044S|1|0.15|ENSG00000156650|chr10:75030954-75030954|G/A|missense_variant KAT6B|p.G2044S|1|0.15|ENSG00000156650|chr10:75030954-75030954|G/A|missense_variant KAT6B|p.G2044S|1|0.15|ENSG00000156650|chr10:75030954-75030954|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3221435546875 2 575.769123 1149.52369 0.1702 9.7997E-05 -1.2254 -0.00070556 -1.0552 -0.00060756 575.7681616807073 76.698 0.44419 72.932 72.609 73.053 -3.7664 23 12 2 0 0 0 0.53552 1 14465 14465 22.736 2.2827 1 1905900 36571 11975 24627 24643 36000 36000 -0.0450887692793458 QQPRRRRRWQR 11 Unmodified _QQPRRRRRWQR_ 0 0 0 REV__ENST00000295206.6_1_2:119600812-119604160:-|nuORF REV__ENST00000295206.6_1_2:119600812-119604160:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2688598632812 3 541.648957 1621.92504 0.2877 0.00015583 -0.39985 -0.00021658 -0.11215 -6.0745E-05 541.6490010729686 133.61 0.10849 128.79 128.7 128.81 -4.8175 4 2 2 0 0 0 0.89135 1 25705 25705 0.026206 0.026206 1 1344600 + 36572 20368 24628 24644 36001 36001 0.13895467611064305 QQQAELAQ 8 Unmodified _QQQAELAQ_ 0 0 0 ENST00000481583.1_1_1:93821317-93826193:+|nuORF;ENSG00000117505|ENST00000370272|DR1 ENST00000481583.1_1_1:93821317-93826193:+|nuORF ENST00000481583.1_1_1:93821317-93826193:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2299499511719 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 79.628 1 76.118 75.618 76.618 -3.5102 0 0 0 0.22628 1 15551 15551 2.643 0 1 36573 2989 24629 24645 36002 36002 -0.014885665216752386 QQQHPPPP 8 Unmodified _QQQHPPPP_ 0 0 0 REV__nc|ENSG00000116560|P23246-2|SFPQ REV__nc|ENSG00000116560|P23246-2|SFPQ MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1596374511719 3 310.159365 927.456264 NaN NaN NaN NaN NaN NaN NaN 33.367 1 31.221 30.721 31.721 -2.1468 0 0 0 0.21486 1 5818 5818 1.8442 0 1 + 36574 15484 24630 24646 36003 36003 -0.010365390765741722 QQQHTKHH 8 Unmodified _QQQHTKHH_ 0 0 0 REV__ZNF574|p.R841H|1|0.33|ENSG00000105732|chr19:42081128-42081128|G/A|missense_variant REV__ZNF574|p.R841H|1|0.33|ENSG00000105732|chr19:42081128-42081128|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.270751953125 2 522.260114 1042.50567 NaN NaN NaN NaN NaN NaN NaN 26.796 1 25.161 24.661 25.661 -1.6347 0 0 0 0.23811 1 4460 4460 0.12286 0 1 + 36575 25584 24631 24647 36004 36004 -0.013878310677455374 QQQQQQPPPA 10 Unmodified _QQQQQQPPPA_ 0 0 0 nc|ENSG00000115977|Q2M2I8-2|AAK1;AAK1|p.R760Gfs*14|1|0.28|ENSG00000115977|chr2:69496072-69496072|T/-|frameshift_variant;ENSG00000115977|ENST00000409085|AAK1;ENST00000549455.1_1_12:111963110-112036838:-|nuORF;nc|ENSG00000204842|Q99700-2|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ATXN2|p.T582Yfs*32|1|0.16|ENSG00000204842|chr12:111516266-111516267|-/T|frameshift_variant nc|ENSG00000115977|Q2M2I8-2|AAK1;nc|ENSG00000204842|Q99700-2|ATXN2 nc|ENSG00000204842|Q99700-2|ATXN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3209838867188 2 575.285994 1148.55744 -0.40158 -0.00023103 0.82314 0.00047354 0.42156 0.00024252 575.2863985035282 16.712 0.48522 15.44 15.28 15.765 -1.2722 34 13 4 0 0 0 0.75565 1 2396 2396 3.9444 0 1 3534100 36576 12293;7613 24632 24648 36005 36005 -0.010901321644951167 QQQQQQPPPA 10 Unmodified _QQQQQQPPPA_ 0 0 0 nc|ENSG00000115977|Q2M2I8-2|AAK1;AAK1|p.R760Gfs*14|1|0.28|ENSG00000115977|chr2:69496072-69496072|T/-|frameshift_variant;ENSG00000115977|ENST00000409085|AAK1;ENST00000549455.1_1_12:111963110-112036838:-|nuORF;nc|ENSG00000204842|Q99700-2|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ATXN2|p.T582Yfs*32|1|0.16|ENSG00000204842|chr12:111516266-111516267|-/T|frameshift_variant nc|ENSG00000115977|Q2M2I8-2|AAK1;nc|ENSG00000204842|Q99700-2|ATXN2 nc|ENSG00000204842|Q99700-2|ATXN2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.285994 1148.55744 0.19566 0.00011256 0.40046 0.00023038 0.59612 0.00034294 575.2861846891465 15.593 0.76213 15.593 15.193 15.955 0 0.089867 -0.00033688 NaN 3.9444 49 21 4 NaN NaN NaN NaN 0 NaN NaN 0 7386500 36577 12293;7613 24632 24648 -0.010901321644951167 QQQQQQPPPA 10 Unmodified _QQQQQQPPPA_ 0 0 0 nc|ENSG00000115977|Q2M2I8-2|AAK1;AAK1|p.R760Gfs*14|1|0.28|ENSG00000115977|chr2:69496072-69496072|T/-|frameshift_variant;ENSG00000115977|ENST00000409085|AAK1;ENST00000549455.1_1_12:111963110-112036838:-|nuORF;nc|ENSG00000204842|Q99700-2|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ATXN2|p.T582Yfs*32|1|0.16|ENSG00000204842|chr12:111516266-111516267|-/T|frameshift_variant nc|ENSG00000115977|Q2M2I8-2|AAK1;nc|ENSG00000204842|Q99700-2|ATXN2 nc|ENSG00000204842|Q99700-2|ATXN2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 575.285994 1148.55744 -0.36348 -0.00020911 0.8284 0.00047656 0.46491 0.00026746 575.2864061044316 16.693 0.55979 15.477 15.285 15.845 -1.2159 -0.026606 0.0001555 NaN 3.9444 43 15 4 NaN NaN NaN NaN 0 NaN NaN 0 5306500 36578 12293;7613 24632 24648 -0.010901321644951167 QQQQQQPPPA 10 Unmodified _QQQQQQPPPA_ 0 0 0 nc|ENSG00000115977|Q2M2I8-2|AAK1;AAK1|p.R760Gfs*14|1|0.28|ENSG00000115977|chr2:69496072-69496072|T/-|frameshift_variant;ENSG00000115977|ENST00000409085|AAK1;ENST00000549455.1_1_12:111963110-112036838:-|nuORF;nc|ENSG00000204842|Q99700-2|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ATXN2|p.T582Yfs*32|1|0.16|ENSG00000204842|chr12:111516266-111516267|-/T|frameshift_variant nc|ENSG00000115977|Q2M2I8-2|AAK1;nc|ENSG00000204842|Q99700-2|ATXN2 nc|ENSG00000204842|Q99700-2|ATXN2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 575.285994 1148.55744 -0.40158 -0.00023103 0.82314 0.00047354 0.42156 0.00024252 575.2863985035282 16.712 0.48522 15.44 15.28 15.765 -1.2722 -0.06326 0.00014945 NaN 3.9444 34 13 4 NaN NaN NaN NaN 0 NaN NaN 0 3534100 36579 12293;7613 24632 24648 -0.010901321644951167 QQQQQQQK 8 Unmodified _QQQQQQQK_ 0 0 0 ENSG00000187555|ENST00000344836|USP7;USP7|p.T440Nfs*4|1|0.17|ENSG00000187555|chr16:8906535-8906536|-/T|frameshift_variant;ENSG00000135457|ENST00000257915|TFCP2;nc|ENSG00000135457|Q12800-4|TFCP2;TFCP2|p.I444Nfs*29|1|0.07|ENSG00000135457|chr12:51098864-51098865|-/T|frameshift_variant;ENSG00000157653|ENST00000374165|C9orf43;ENST00000569680.1_1_15:74833658-74865607:+|nuORF;ARID3B|p.S167Lfs*90|1|0.09|ENSG00000179361|chr15:74544434-74544434|T/-|frameshift_variant;ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF;nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1;ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B;nc|ENSG00000179361|Q8IVW6-3|ARID3B;ENSG00000179361|ENST00000346246|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B;nc|ENSG00000135457|Q12800-2|TFCP2;nc|ENSG00000135457|Q12800-3|TFCP2 ENSG00000187555|ENST00000344836|USP7;REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;REV__KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant;REV__ENSG00000067248|ENST00000251636|DHX29;ENSG00000056097|ENST00000265069|ZFR;nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000179361|Q8IVW6-3|ARID3B;nc|ENSG00000135457|Q12800-2|TFCP2;REV__CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant;REV__ENSG00000136451|ENST00000581208|VEZF1;REV__ENSG00000196782|ENST00000509479|MAML3;REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;REV__nc|ENSG00000115977|Q2M2I8-2|AAK1 REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2681274414062 2 522.265062 1042.51557 NaN NaN NaN NaN NaN NaN NaN 16.772 1 16.772 16.272 17.272 0 0 0 0 0.2343 1 2622 2622 0.12286 0 1 36580 17938;23733;1278;7114;14212;7561;4550;13397;19514;19281;20;6627;12340;16331;24011 24633 24649 36006 36006 -0.003986878530440663 QQQQRRYLEAY 11 Unmodified _QQQQRRYLEAY_ 0 0 0 REV__nc|ENSG00000188483|Q5T953-2|IER5L REV__nc|ENSG00000188483|Q5T953-2|IER5L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3768310546875 2 741.876039 1481.73752 0.3544 0.00026292 -0.83085 -0.00061639 -0.47645 -0.00035347 741.8754586096514 61.938 0.38692 58.568 58.32 58.707 -3.3694 26 10 3 0 0 0 0.65515 1 11573 11573 3.0723 2.2273 1 2625300 + 36581 19148 24634 24650 36007 36007 0.01592546772485548 QQQRRRKEERR 11 Unmodified _QQQRRRKEERR_ 0 0 0 REV__GIGYF1|p.Q711R|1|0.42|ENSG00000146830|chr7:100683365-100683365|T/C|missense_variant REV__GIGYF1|p.Q711R|1|0.42|ENSG00000146830|chr7:100683365-100683365|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6886596679688 3 523.96461 1568.872 -0.28901 -0.00015143 -0.027795 -1.4563E-05 -0.3168 -0.00016599 524.299018436582 57.431 0.4965 54.536 54.234 54.73 -2.8944 16 13 2 0 0 0 0.89122 1 11038 11038 0.50596 0 1 957670 + 36582 23573 24635 24651 36008 36008 0.11032045037745775 QQRIKMLILP 10 Unmodified _QQRIKMLILP_ 0 0 0 nc|ENSG00000112964|P10912-4|GHR;ENSG00000112964|ENST00000230882|GHR nc|ENSG00000112964|P10912-4|GHR nc|ENSG00000112964|P10912-4|GHR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 413.9427490234375 3 413.925043 1238.7533 NaN NaN NaN NaN NaN NaN NaN 9.62 1 8.5556 8.0556 9.0556 -1.0645 0 0 0 0.22588 1 1038 1038 0.15932 0 1 36583 2719 24636 24652 36009 36009 0.14347161755836169 QQRRKEERRKR 11 Unmodified _QQRRKEERRKR_ 0 0 0 REV__ENSG00000146830|ENST00000678049|GIGYF1 REV__ENSG00000146830|ENST00000678049|GIGYF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3922729492188 2 785.46147 1568.90839 NaN NaN NaN NaN NaN NaN NaN 162.12 1 156.94 156.44 157.44 -5.1878 0 0 0 0.22632 1 31475 31475 0.026206 0 1 + 36584 16902 24637 24653 36010 36010 0.14668921934412538 QQRRRDNRRRR 11 Unmodified _QQRRRDNRRRR_ 0 0 0 REV__ENSG00000134030|ENST00000256413|CTIF REV__ENSG00000134030|ENST00000256413|CTIF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2664794921875 3 532.975732 1595.90537 0.24285 0.00012943 -0.53487 -0.00028507 -0.29201 -0.00015564 532.9754115739455 132.15 0.20734 127.35 127.22 127.42 -4.799 6 5 2 0 0 0 0.82458 1 25416 25416 0.36667 0.27183 1 546880 + 36585 16189 24638 24654 36011 36011 0.13125091600272754 QQRRRKEERRK 11 Unmodified _QQRRRKEERRK_ 0 0 0 REV__GIGYF1|p.Q711R|1|0.42|ENSG00000146830|chr7:100683365-100683365|T/C|missense_variant REV__GIGYF1|p.Q711R|1|0.42|ENSG00000146830|chr7:100683365-100683365|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.9231567382812 3 523.976739 1568.90839 NaN NaN NaN NaN NaN NaN NaN 171.64 1 171.64 171.14 172.14 0 0 0 0 0.22632 1 35377 35377 0.58532 0.41332 1 + 36586 23573 24639 24655 36012 36012 0.14668921934435275 QQRRRRRRRRR 11 Unmodified _QQRRRRRRRRR_ 0 0 0 ENST00000405737.2_2_13:41635036-41635183:-|nuORF REV__ENST00000405737.2_2_13:41635036-41635183:-|nuORF;REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF REV__ENST00000405737.2_2_13:41635036-41635183:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 560.6875610351562 3 560.686516 1679.03772 NaN NaN NaN NaN NaN NaN NaN 167.12 1 162.23 161.73 162.73 -4.8916 0 0 0 0.22632 1 32822 32822 0.172 0 1 36587 9536;21318 24640 24656 36013 36013 0.22536161127732157 QQTAPLPLRK 10 Unmodified _QQTAPLPLRK_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3242797851562 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 150.75 1 145.62 145.12 146.12 -5.1204 0 0 0 2.8426 1 29218 29218 0.063865 0 1 36588 7760 24641 24657 36014 36014 0.11292785042655851 QQVKLAIST 9 Unmodified _QQVKLAIST_ 0 0 0 REV__USP6|p.H470Ifs*36|1|0.24|ENSG00000129204|chr17:5139580-5139580|C/-|frameshift_variant REV__USP6|p.H470Ifs*36|1|0.24|ENSG00000129204|chr17:5139580-5139580|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 494.2957763671875 2 494.295299 986.576045 NaN NaN NaN NaN NaN NaN NaN 16.398 1 15.182 14.682 15.682 -1.2159 0 0 0 0.19657 1 2578 2578 4.897 4.8237 1 + 36589 15953 24642 24658 36015 36015 0.08222029477315118 QQVQKLFR 8 Unmodified _QQVQKLFR_ 0 0 0 nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000020577|ENST00000554335|SAMD4A nc|ENSG00000020577|Q9UPU9-2|SAMD4A nc|ENSG00000020577|Q9UPU9-2|SAMD4A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6971435546875 2 523.808908 1045.60326 NaN NaN NaN NaN NaN NaN NaN 94.593 1 90.712 90.212 91.212 -3.881 0 0 0 0.21486 1 18149 18149 12.532 4.6214 1 36590 1124 24643 24659 36016 36016 0.08228557808365622 QQWRLRRLQER 11 Unmodified _QQWRLRRLQER_ 0 0 0 ENSG00000181215|ENST00000531445|C4orf50 ENSG00000181215|ENST00000531445|C4orf50 ENSG00000181215|ENST00000531445|C4orf50 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6934814453125 3 523.634202 1567.88078 NaN NaN NaN NaN NaN NaN NaN 162.3 1 157.16 156.66 157.66 -5.1438 0 0 0 0.22632 1 31527 31527 0.026206 0 1 36591 6714 24644 24660 36017 36017 0.11955018674211715 QQYLKEWS 8 Unmodified _QQYLKEWS_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2841186523438 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 18.892 1 18.892 18.392 19.392 0 0 0 0 0.19342 1 3063 3063 26.884 5.137 1 + 36592 18018 24645 24661 36018 36018 -0.01303133936426093 QQYLKEWS 8 Unmodified _QQYLKEWS_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.267333984375 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 18.931 1 18.931 18.431 19.431 0 0 0 0 0.19342 1 3071 3071 26.884 5.137 1 + 36593 18018 24645 24661 36019 36019 -0.01303133936426093 QQYRQKMRWLK 11 Unmodified _QQYRQKMRWLK_ 0 0 0 ENST00000474481.1_1_1:1425808-1431194:+|nuORF;nc|ENSG00000160072|Q5T9A4-3|ATAD3B;ENST00000472194.6_1_1:1413873-1431194:+|nuORF;ENSG00000160072|ENST00000673477|ATAD3B ENST00000474481.1_1_1:1425808-1431194:+|nuORF ENST00000474481.1_1_1:1425808-1431194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2728881835938 3 522.289155 1563.84564 NaN NaN NaN NaN NaN NaN NaN 138.36 1 133.72 133.22 134.22 -4.6413 0 0 0 0.22632 1 27319 27319 0.00056442 0 1 36594 10257 24646 24662 36020 36020 0.08626639822045945 QRCNTILQM 9 Carbamidomethyl (C),Oxidation (M) _QRC(Carbamidomethyl (C))NTILQM(Oxidation (M))_ QRC(1)NTILQM QRCNTILQM(1) QRC(42)NTILQM QRCNTILQM(42) 0 1 1 TMF1|p.Y1052C|1|0.15|ENSG00000144747|chr3:69023304-69023304|T/C|missense_variant TMF1|p.Y1052C|1|0.15|ENSG00000144747|chr3:69023304-69023304|T/C|missense_variant TMF1|p.Y1052C|1|0.15|ENSG00000144747|chr3:69023304-69023304|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2539672851562 2 590.284082 1178.55361 NaN NaN NaN NaN NaN NaN NaN 73.421 1 73.421 72.921 73.921 0 0 0 0 0.081239 1 14248 14248 41.84 16.849 1 36595 25863 24647 24663 36021 36021 26 129 -0.028522612542474235 QRDIRQFQLQH 11 Unmodified _QRDIRQFQLQH_ 0 0 0 nc|ENSG00000103546|P23975-3|SLC6A2;ENSG00000103546|ENST00000568943|SLC6A2 nc|ENSG00000103546|P23975-3|SLC6A2 nc|ENSG00000103546|P23975-3|SLC6A2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2652893066406 3 490.263774 1467.76949 NaN NaN NaN NaN NaN NaN NaN 121.67 1 116.98 116.48 117.48 -4.6873 0 0 0 0.22632 1 23359 23359 0.172 0 1 36596 2197 24648 24664 36022 36022 0.05431959246288898 QRDIRQFQLQH 11 Unmodified _QRDIRQFQLQH_ 0 0 0 nc|ENSG00000103546|P23975-3|SLC6A2;ENSG00000103546|ENST00000568943|SLC6A2 nc|ENSG00000103546|P23975-3|SLC6A2 nc|ENSG00000103546|P23975-3|SLC6A2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26507568359375 3 490.263774 1467.76949 NaN NaN NaN NaN NaN NaN NaN 121.13 1 116.6 116.1 117.1 -4.5305 0 0 0 0.22632 1 23324 23324 0.58532 0 1 36597 2197 24648 24664 36023 36023 0.05431959246288898 QREAVLPC 8 Unmodified _QREAVLPC_ 0 0 0 REV__ENST00000483585.5_1_7:45011810-45018578:-|nuORF REV__ENST00000483585.5_1_7:45011810-45018578:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.224365234375 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 71.263 1 67.796 67.296 68.296 -3.467 0 0 0 0.2343 1 13505 13505 0.62683 0.55356 1 + 36598 22201 24649 24665 36024 36024 0.003732718485252917 QRGLPMDG 8 Unmodified _QRGLPMDG_ 0 0 0 ENSG00000177613|ENST00000331173|CSTF2T ENSG00000177613|ENST00000331173|CSTF2T ENSG00000177613|ENST00000331173|CSTF2T MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2267150878906 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 108.35 1 104.03 103.53 104.53 -4.32 0 0 0 0.23749 1 21348 21348 0.12286 0 1 36599 6524 24650 24666 36025 36025 -0.023875877025943737 QRHAEREIDR 10 Unmodified _QRHAEREIDR_ 0 0 0 REV__ENSG00000141854|ENST00000587086|MISP3 REV__ENSG00000141854|ENST00000587086|MISP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2273254394531 3 437.228841 1308.66469 NaN NaN NaN NaN NaN NaN NaN 36.278 1 34.001 33.501 34.501 -2.2766 0 0 0 2.8426 1 6398 6398 3.8763 3.8631 1 + 36600 16652 24651 24667 36026 36026 0.022708377696972093 QRHLSNPAR 9 Unmodified _QRHLSNPAR_ 0 0 0 ENST00000533518.5_3_16:31095113-31102425:-|nuORF;ENSG00000151006|ENST00000280606|PRSS53 ENST00000533518.5_3_16:31095113-31102425:-|nuORF ENST00000533518.5_3_16:31095113-31102425:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015075683594 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 62.869 1 59.612 59.112 60.112 -3.2567 0 0 0 0.23108 1 11791 11791 14.405 1.5328 1 36601 4844 24652 24668 36027 36027 0.04348717374705302 QRHPAPPA 8 Unmodified _QRHPAPPA_ 0 0 0 REV__ENST00000371443.5_1_9:140445786-140446769:+|nuORF REV__ENST00000371443.5_1_9:140445786-140446769:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2291564941406 2 437.238119 872.461684 NaN NaN NaN NaN NaN NaN NaN 35.011 1 32.617 32.117 33.117 -2.3938 0 0 0 0.23899 1 6442 6442 1.3295 0 1 + 36602 21005 24653 24669 36028 36028 0.020351845058826257 QRHYHPHWHFW 11 Unmodified _QRHYHPHWHFW_ 0 0 0 ENST00000331803.8_1_7:48142961-48146533:+|nuORF ENST00000331803.8_1_7:48142961-48146533:+|nuORF ENST00000331803.8_1_7:48142961-48146533:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7954711914062 3 544.256954 1629.74903 0.37711 0.00020525 -1.4969 -0.00081468 -1.1198 -0.00060944 544.2557187119344 143.56 0.20999 138.66 138.47 138.68 -4.8982 7 5 2 0 0 0 0.96225 1 27693 27693 0.45452 0.38125 1 1496900 36603 8781 24654 24670 36029 36029 -0.04065166622876859 QRIALVKDK 9 Unmodified _QRIALVKDK_ 0 0 0 REV__ENST00000574224.1_1_16:16108407-16150188:+|nuORF REV__ENST00000574224.1_1_16:16108407-16150188:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5599365234375 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 21.703 1 20.229 19.729 20.729 -1.4742 0 0 0 0.19636 1 3681 3681 2.6312 0.13275 1 + 36604 14868 24655 24671 36030 36030 0.12873400013927494 QRKDPGLP 8 Unmodified _QRKDPGLP_ 0 0 0 REV__ENST00000556029.5_2_12:98909542-98909698:+|nuORF REV__ENST00000556029.5_2_12:98909542-98909698:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.17523193359375 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 39.193 1 36.751 36.251 37.251 -2.4419 0 0 0 0.21486 1 6995 6995 0.45834 0 1 + 36605 22990 24656 24672 36031 36031 0.044843204745689036 QRKLERKLREK 11 Unmodified _QRKLERKLREK_ 0 0 0 RBM25|p.R443Q|1|0.36|ENSG00000119707|chr14:73106032-73106032|G/A|missense_variant RBM25|p.R443Q|1|0.36|ENSG00000119707|chr14:73106032-73106032|G/A|missense_variant RBM25|p.R443Q|1|0.36|ENSG00000119707|chr14:73106032-73106032|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 495.3091125488281 3 495.310836 1482.91068 NaN NaN NaN NaN NaN NaN NaN 14.526 1 13.353 12.853 13.853 -1.173 0 0 0 0.22632 1 1972 1972 1.4551 0.94916 1 36606 12871 24657 24673 36032 36032 0.18853957619535322 QRKPHATEQ 9 Unmodified _QRKPHATEQ_ 0 0 0 nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7875366210938 2 547.788704 1093.56285 NaN NaN NaN NaN NaN NaN NaN 8.5676 1 7.7733 7.2733 8.2733 -0.79424 0 0 0 0.23508 1 902 902 0.52476 0 1 36607 7477 24658 24674 36033 36033 0.019815914179162064 QRKQQPPP 8 Unmodified _QRKQQPPP_ 0 0 0 LZTR1|p.R630Q|1|0.43|ENSG00000099949|chr22:20994973-20994973|G/A|missense_variant LZTR1|p.R630Q|1|0.43|ENSG00000099949|chr22:20994973-20994973|G/A|missense_variant LZTR1|p.R630Q|1|0.43|ENSG00000099949|chr22:20994973-20994973|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2735290527344 2 489.777608 977.540663 0.0083456 4.0875E-06 -0.29798 -0.00014594 -0.28963 -0.00014185 489.77742404068914 17.958 1.771 16.647 16.307 18.078 -1.3109 139 50 5 0 0 0 0.69887 1 2831 2831 14.582 5.9884 1 13658000 36608 12102 24659 24675 36034 36034 0.05099411740184223 QRKQVSCCCCC 11 Unmodified _QRKQVSCCCCC_ 0 0 0 REV__ENST00000510457.1_1_4:48091737-48136211:-|nuORF REV__ENST00000510457.1_1_4:48091737-48136211:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7681274414062 2 630.742356 1259.47016 NaN NaN NaN NaN NaN NaN NaN 162.85 1 157.66 157.16 158.16 -5.1878 0 0 0 0.22632 1 31643 31643 0.0072825 0 1 + 36609 14322 24660 24676 36035 36035 -0.14919780289574192 QRKRQTWRWDR 11 Unmodified _QRKRQTWRWDR_ 0 0 0 REV__nc|ENSG00000168397|Q9Y4P1-6|ATG4B;REV__ENST00000493618.5_1_2:242577129-242598937:+|nuORF REV__nc|ENSG00000168397|Q9Y4P1-6|ATG4B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 808.4378051757812 2 808.437464 1614.86037 NaN NaN NaN NaN NaN NaN NaN 168.25 1 163.3 162.8 163.8 -4.948 0 0 0 0.23558 1 33157 33157 3.8763 1.5936 1 + 36610 18021;22353 24661 24677 36036 36036 0.07753848014385767 QRLFVQHIY 9 Unmodified _QRLFVQHIY_ 0 0 0 ENST00000456517.2_1_11:33309008-33350099:+|nuORF ENST00000456517.2_1_11:33309008-33350099:+|nuORF ENST00000456517.2_1_11:33309008-33350099:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2794189453125 2 602.33529 1202.65603 NaN NaN NaN NaN NaN NaN NaN 121.37 1 116.84 116.34 117.34 -4.5305 0 0 0 0.19632 1 23367 23367 0.073264 0.029476 1 36611 10029 24662 24678 36037 36037 0.06280515871185344 QRLKEEQRKLR 11 Unmodified _QRLKEEQRKLR_ 0 0 0 ENST00000474032.1_1_22:38082399-38084247:+|nuORF;ENST00000468597.5_1_22:38082399-38086802:+|nuORF;ENST00000493862.5_1_22:38077834-38087340:+|nuORF;ENSG00000273899|ENST00000359114|NOL12 ENST00000474032.1_1_22:38082399-38084247:+|nuORF ENST00000474032.1_1_22:38082399-38084247:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3875122070312 2 742.444423 1482.87429 NaN NaN NaN NaN NaN NaN NaN 136.33 1 136.33 135.83 136.83 0 0 0 0 0.22632 1 27016 27016 0.50596 0 1 36612 8014 24663 24679 36038 36038 0.15217080722800347 QRLLKWMYKFR 11 Unmodified _QRLLKWMYKFR_ 0 0 0 REV__ENSG00000118434|ENST00000237201|SPACA1 REV__ENSG00000118434|ENST00000237201|SPACA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.681884765625 3 523.634263 1567.88096 NaN NaN NaN NaN NaN NaN NaN 156.35 1 151.07 150.57 151.57 -5.2854 0 0 0 0.22632 1 30332 30332 0.50596 0 1 + 36613 15553 24664 24680 36039 36039 0.1197330234981564 QRLLSTYY 8 Unmodified _QRLLSTYY_ 0 0 0 ENST00000561318.1_1_15:52311008-52311242:-|nuORF ENST00000561318.1_1_15:52311008-52311242:-|nuORF ENST00000561318.1_1_15:52311008-52311242:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279296875 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 37.163 1 37.163 36.663 37.663 0 0 0 0 0.19492 1 6866 6866 26.341 6.9793 1 36614 11301 24665 24681 36040 36040 0.025174564432290936 QRLQRRQLWWR 11 Unmodified _QRLQRRQLWWR_ 0 0 0 REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 407.9962158203125 4 407.23665 1624.9175 0.031396 1.2786E-05 -1.1809 -0.00048089 -1.1495 -0.0004681 407.23616394498555 35.812 1.0446 35.812 35.203 36.248 0 106 29 5 0 0 0 0.65515 1 6613 6613 3.0723 2.9774 1 28987000 + 36615 20202 24666 24682 36041 36041 0.130033152907572 QRLQRRQLWWR 11 Unmodified _QRLQRRQLWWR_ 0 0 0 REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 407.23665 1624.9175 0.031396 1.2786E-05 -1.1809 -0.00048089 -1.1495 -0.0004681 407.23616394498555 35.812 1.0446 35.812 35.203 36.248 0 -0.016448 -0.00046846 NaN 3.0723 106 29 5 NaN NaN NaN NaN 0 NaN NaN 0 28987000 + 36616 20202 24666 24682 0.130033152907572 QRLQRRQLWWR 11 Unmodified _QRLQRRQLWWR_ 0 0 0 REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 407.23665 1624.9175 -0.51508 -0.00020976 -0.47187 -0.00019216 -0.98695 -0.00040192 407.2364721638073 38.394 1.0057 35.845 35.325 36.33 -2.5491 0.016674 0.00068643 NaN 3.0723 97 28 4 NaN NaN NaN NaN 0 NaN NaN 0 24070000 + 36617 20202 24666 24682 0.130033152907572 QRLQRRQLWWR 11 Unmodified _QRLQRRQLWWR_ 0 0 0 REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 407.23665 1624.9175 0.039215 1.597E-05 -1.0281 -0.00041867 -0.98886 -0.0004027 407.236190408942 38.28 0.96032 35.838 35.412 36.373 -2.4419 0.0096318 -0.00021958 NaN 3.0723 84 26 4 NaN NaN NaN NaN 0 NaN NaN 0 16432000 + 36618 20202 24666 24682 0.130033152907572 QRLQRRQLWWR 11 Unmodified _QRLQRRQLWWR_ 0 0 0 REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 407.23665 1624.9175 -0.26365 -0.00010737 -0.83309 -0.00033927 -1.0967 -0.00044663 407.2363076388024 38.224 1.1441 35.819 35.189 36.333 -2.4049 -0.0098578 9.8032E-05 NaN 3.0723 105 32 4 NaN NaN NaN NaN 0 NaN NaN 0 20807000 + 36619 20202 24666 24682 0.130033152907572 QRLRKWRRERH 11 Unmodified _QRLRKWRRERH_ 0 0 0 ENST00000563197.5_2_16:30007482-30007590:+|nuORF ENST00000563197.5_2_16:30007482-30007590:+|nuORF ENST00000563197.5_2_16:30007482-30007590:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.390380859375 2 810.974548 1619.93454 NaN NaN NaN NaN NaN NaN NaN 175.05 1 170.26 169.76 170.76 -4.7898 0 0 0 0.23698 1 35782 35782 0.26902 0 1 36620 11329 24667 24683 36042 36042 0.14937235896559287 QRLRQITDRRK 11 Unmodified _QRLRQITDRRK_ 0 0 0 REV__GUCY2C|p.K528Nfs*4|1|0.35|ENSG00000070019|chr12:14651980-14651980|T/-|frameshift_variant REV__GUCY2C|p.K528Nfs*4|1|0.35|ENSG00000070019|chr12:14651980-14651980|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27099609375 3 490.630569 1468.86988 NaN NaN NaN NaN NaN NaN NaN 131.19 1 131.19 130.69 131.69 0 0 0 0 0.22632 1 25934 25934 0.50596 0.50596 1 + 36621 14248 24668 24684 36043 36043 0.1541961629989146 QRLVMPRIPL 10 Unmodified _QRLVMPRIPL_ 0 0 0 ENST00000378164.6_1_8:120844797-120844887:-|nuORF ENST00000378164.6_1_8:120844797-120844887:-|nuORF ENST00000378164.6_1_8:120844797-120844887:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 408.2550964355469 3 408.253271 1221.73798 NaN NaN NaN NaN NaN NaN NaN 142.65 1 137.75 137.25 138.25 -4.8982 0 0 0 2.8426 1 27526 27526 0.043787 0.014505 1 36622 9276 24669 24685 36044 36044 0.1359829495863778 QRMRYEYEFYH 11 Unmodified _QRMRYEYEFYH_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.36474609375 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 158.5 1 158.5 158 159 0 0 0 0 0.22632 1 31825 31825 0 0 1 36623 2661 24670 24686 36045 36045 -0.07118215336481626 QRMRYEYEFYH 11 Unmodified _QRMRYEYEFYH_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3645629882812 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 87.971 1 84.178 83.678 84.678 -3.7926 0 0 0 0.22632 1 17205 17205 0 0 1 36624 2661 24670 24686 36046 36046 -0.07118215336481626 QRMRYEYEFYH 11 Unmodified _QRMRYEYEFYH_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3645629882812 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 87.986 1 84.194 83.694 84.694 -3.7926 0 0 0 0.23698 1 17207 17207 0 0 1 36625 2661 24670 24686 36047 36047 -0.07118215336481626 QRMRYEYEFYH 11 Unmodified _QRMRYEYEFYH_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.364501953125 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 123.25 1 118.67 118.17 119.17 -4.5757 0 0 0 0.22632 1 24297 24297 0 0 1 36626 2661 24670 24686 36048 36048 -0.07118215336481626 QRMRYEYEFYH 11 Unmodified _QRMRYEYEFYH_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3616943359375 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 136.38 1 131.74 131.24 132.24 -4.6399 0 0 0 0.23698 1 26911 26911 0.30703 0.30703 1 36627 2661 24670 24686 36049 36049 -0.07118215336481626 QRMRYEYEFYH 11 Unmodified _QRMRYEYEFYH_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3646850585938 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 178.58 1 173.79 173.29 174.29 -4.7898 0 0 0 0.22632 1 36537 36537 0 0 1 36628 2661 24670 24686 36050 36050 -0.07118215336481626 QRMRYEYEFYH 11 Unmodified _QRMRYEYEFYH_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3646850585938 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 178.6 1 173.81 173.31 174.31 -4.7898 0 0 0 0.23698 1 36539 36539 0 0 1 36629 2661 24670 24686 36051 36051 -0.07118215336481626 QRMRYEYEFYH 11 Unmodified _QRMRYEYEFYH_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3646240234375 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 127.12 1 122.33 121.83 122.83 -4.7958 0 0 0 0.22632 1 24403 24403 0 0 1 36630 2661 24670 24686 36052 36052 -0.07118215336481626 QRMRYEYEFYH 11 Unmodified _QRMRYEYEFYH_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.36474609375 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 155.81 1 150.53 150.03 151.03 -5.2854 0 0 0 0.22632 1 30224 30224 0 0 1 36631 2661 24670 24686 36053 36053 -0.07118215336481626 QRMRYEYEFYH 11 Unmodified _QRMRYEYEFYH_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3645629882812 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 158.48 1 153.21 152.71 153.71 -5.2748 0 0 0 0.22632 1 30758 30758 0 0 1 36632 2661 24670 24686 36054 36054 -0.07118215336481626 QRMRYEYEFYH 11 Unmodified _QRMRYEYEFYH_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.364501953125 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 50.1 1 47.094 46.594 47.594 -3.0068 0 0 0 0.22632 1 9201 9201 0 0 1 36633 2661 24670 24686 36055 36055 -0.07118215336481626 QRMRYEYEFYH 11 Unmodified _QRMRYEYEFYH_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3638305664062 2 811.36445 1620.71435 NaN NaN NaN NaN NaN NaN NaN 117.01 1 112.65 112.15 113.15 -4.3585 0 0 0 0.22632 1 22525 22525 0.094841 0 1 36634 2661 24670 24686 36056 36056 -0.07118215336481626 QRNEVVVEL 9 Unmodified _QRNEVVVEL_ 0 0 0 KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant;ENSG00000186432|ENST00000334256|KPNA4 KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.777099609375 2 543.301113 1084.58767 0.14375 7.8097E-05 0.13177 7.1591E-05 0.27552 0.00014969 543.3011515534726 95.015 0.89824 95.015 94.557 95.456 0 65 25 3 0 0 0 2.3519E-05 2 18616 18616;18689 134.3 49.024 1 13770000 36635 7056 24671 24687 36057;36058 36057 0.048762265006644157 QRNEVVVEL 9 Unmodified _QRNEVVVEL_ 0 0 0 KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant;ENSG00000186432|ENST00000334256|KPNA4 KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.788818359375 2 543.301113 1084.58767 0.25759 0.00013995 -0.21052 -0.00011438 0.047074 2.5575E-05 543.3009520513697 98.534 1.0482 94.402 93.876 94.925 -4.1326 83 29 4 0 0 0 0.0096693 1 19337 19337 160.52 67.694 1 16821000 36636 7056 24671 24687 36059 36059 0.048762265006644157 QRNEVVVEL 9 Unmodified _QRNEVVVEL_ 0 0 0 KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant;ENSG00000186432|ENST00000334256|KPNA4 KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.770263671875 2 543.301113 1084.58767 0.22657 0.0001231 -0.21591 -0.0001173 0.010662 5.7928E-06 543.300986736756 98.795 0.9093 94.526 94.019 94.929 -4.2692 71 25 4 0 0 0 0.0087568 1 18933 18933 107.19 14.365 1 12906000 36637 7056 24671 24687 36060 36060 0.048762265006644157 QRNPEISHL 9 Unmodified _QRNPEISHL_ 0 0 0 UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7836303710938 2 547.291079 1092.56761 0.42084 0.00023032 -0.9799 -0.00053629 -0.55907 -0.00030597 547.2904566951806 38.054 0.24802 38.054 37.892 38.14 0 9 6 2 0 0 0 0.30618 2 7029 7029;7047 31.268 6.2774 1 1553500 36638 7143 24672 24688 36061;36062 36061 0.02502475560709172 QRNWDGRQLSV 11 Unmodified _QRNWDGRQLSV_ 0 0 0 REV__ENST00000339950.4_1_1:62902583-62902709:+|nuORF REV__ENST00000339950.4_1_1:62902583-62902709:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7557678222656 3 453.568975 1357.6851 0.17694 8.0253E-05 -1.0745 -0.00048735 -0.89755 -0.0004071 453.56844235492827 54.727 0.62863 54.727 54.318 54.947 0 28 17 2 0 0 0 0.88733 1 10445 10445 5.4027 0 1 1032400 + 36639 20702 24673 24689 36063 36063 0.02056008429508438 QRNWDGRQLSV 11 Unmodified _QRNWDGRQLSV_ 0 0 0 REV__ENST00000339950.4_1_1:62902583-62902709:+|nuORF REV__ENST00000339950.4_1_1:62902583-62902709:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.755859375 3 453.568975 1357.6851 0.026632 1.208E-05 -0.76141 -0.00034535 -0.73478 -0.00033327 453.56853579759866 58.036 0.63756 54.784 54.358 54.996 -3.2517 28 17 2 0 0 0 0.88733 1 10773 10773 5.4027 0 1 1306900 + 36640 20702 24673 24689 36064 36064 0.02056008429508438 QRPKLFPEK 9 Unmodified _QRPKLFPEK_ 0 0 0 ENST00000482985.4_1_10:81420682-81426574:+|nuORF;ENST00000496359.5_1_10:81565841-81574436:-|nuORF ENST00000482985.4_1_10:81420682-81426574:+|nuORF ENST00000482985.4_1_10:81420682-81426574:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21142578125 3 381.560869 1141.66078 0.14866 5.6723E-05 -0.1988 -7.5856E-05 -0.050145 -1.9133E-05 381.5607449354636 105.22 0.74369 105.22 105 105.74 0 37 20 3 0 0 0 0.64253 1 20770 20770 2.4985 0.59211 1 2322600 36641 10409 24674 24690 36065 36065 0.09561400013922139 QRPQHHPA 8 Unmodified _QRPQHHPA_ 0 0 0 ENST00000287322.4_2_8:38066567-38066711:+|nuORF ENST00000287322.4_2_8:38066567-38066711:+|nuORF ENST00000287322.4_2_8:38066567-38066711:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.17010498046875 3 324.170375 969.489296 NaN NaN NaN NaN NaN NaN NaN 68.467 1 65.077 64.577 65.577 -3.3903 0 0 0 0.21486 1 12925 12925 0.45834 0 1 36642 8462 24675 24691 36066 36066 0.0033308776612557267 QRPQPARRRRY 11 Unmodified _QRPQPARRRRY_ 0 0 0 REV__ENSG00000167874|ENST00000301599|TMEM88 REV__ENSG00000167874|ENST00000301599|TMEM88 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3759765625 2 742.426899 1482.83924 NaN NaN NaN NaN NaN NaN NaN 172.35 1 172.35 171.85 172.85 0 0 0 0 0.22632 1 35578 35578 5.4027 5.2307 1 + 36643 17975 24676 24692 36067 36067 0.11713882705544165 QRPVRWMLQ 9 Unmodified _QRPVRWMLQ_ 0 0 0 TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant;ENSG00000167333|ENST00000300747|TRIM68;ENST00000532108.1_1_11:4623360-4626734:-|nuORF;ENST00000531101.5_1_11:4621508-4624512:-|nuORF TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3300476074219 3 405.225603 1212.65498 NaN NaN NaN NaN NaN NaN NaN 45.222 1 42.432 41.932 42.932 -2.79 0 0 0 0.23508 1 8513 8513 4.897 2.0537 1 36644 5803 24677 24693 36068 36068 0.057159782306143825 QRQDREWRMLF 11 Unmodified _QRQDREWRMLF_ 0 0 0 ENST00000256078.8_1_12:25368463-25378573:-|nuORF ENST00000256078.8_1_12:25368463-25378573:-|nuORF ENST00000256078.8_1_12:25368463-25378573:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26220703125 3 522.264898 1563.77286 NaN NaN NaN NaN NaN NaN NaN 85.294 1 81.385 80.885 81.885 -3.9093 0 0 0 0.22632 1 16220 16220 0.172 0 1 36645 8253 24678 24694 36069 36069 0.01352886028598732 QRQREREFRRH 11 Unmodified _QRQREREFRRH_ 0 0 0 REV__sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3 REV__sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2684326171875 3 533.289205 1596.84579 NaN NaN NaN NaN NaN NaN NaN 16.935 1 15.582 15.082 16.082 -1.3534 0 0 0 0.22632 1 2428 2428 0 0 1 + 36646 24669 24679 24695 36070 36070 0.07123775866239157 QRQTLKYVP 9 Unmodified _QRQTLKYVP_ 0 0 0 REV__ENSG00000074696|ENST00000261875|HACD3 REV__ENSG00000074696|ENST00000261875|HACD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 378.22039794921875 3 378.220624 1131.64004 NaN NaN NaN NaN NaN NaN NaN 176.73 1 171.85 171.35 172.35 -4.8739 0 0 0 0.23508 1 35161 35161 1.1933 0 1 + 36647 14318 24680 24696 36071 36071 0.07948809634262943 QRQWRQYEAL 10 Unmodified _QRQWRQYEAL_ 0 0 0 REV__PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant REV__PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2315979003906 3 459.905587 1376.69493 NaN NaN NaN NaN NaN NaN NaN 15.756 1 14.402 13.902 14.902 -1.3534 0 0 0 0.22588 1 2193 2193 0.77653 0.27058 1 + 36648 14046 24681 24697 36072 36072 0.021651964348848196 QRRARHLEKKF 11 Unmodified _QRRARHLEKKF_ 0 0 0 ENST00000556442.1_1_14:21458576-21458765:+|nuORF;ENST00000557701.5_1_14:21458161-21460365:+|nuORF;ENST00000554985.5_1_14:21458161-21460793:+|nuORF;ENST00000553441.5_1_14:21458218-21461351:+|nuORF;ENST00000555902.6_1_14:21458708-21463066:+|nuORF;nc|ENSG00000165792|Q9H7H0-2|METTL17;ENSG00000165792|ENST00000339374|METTL17;nc|ENSG00000165792|Q9H7H0-3|METTL17 ENST00000556442.1_1_14:21458576-21458765:+|nuORF ENST00000556442.1_1_14:21458576-21458765:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2610168457031 3 490.291776 1467.8535 0.28105 0.0001378 -0.03924 -1.9239E-05 0.24181 0.00011856 490.6261317636987 32.353 0.32258 30.122 29.936 30.259 -2.2305 11 8 2 0 0 0 0.66234 1 5883 5883 0 0 1 416450 36649 5661 24682 24698 36073 36073 0.1382853513377995 QRREERRQQRQ 11 Unmodified _QRREERRQQRQ_ 0 0 0 REV__ENSG00000084092|ENST00000264230|NOA1 REV__ENSG00000084092|ENST00000264230|NOA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3917236328125 2 785.425084 1568.83562 NaN NaN NaN NaN NaN NaN NaN 166.66 1 166.66 166.16 167.16 0 0 0 0 0.23698 1 33971 33971 2.2828 0.95324 1 + 36650 14463 24683 24699 36074 36074 0.073951681410108 QRREQRRQRKE 11 Unmodified _QRREQRRQRKE_ 0 0 0 REV__ENST00000562235.5_1_16:67262534-67263013:+|nuORF REV__ENST00000562235.5_1_16:67262534-67263013:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3955688476562 2 785.443277 1568.872 NaN NaN NaN NaN NaN NaN NaN 114.79 1 114.79 114.29 115.29 0 0 0 0 0.23476 1 22585 22585 4.5289 1.5336 1 + 36651 18046 24684 24700 36075 36075 0.11032045037745775 QRRKKTATY 9 Unmodified _QRRKKTATY_ 0 0 0 REV__tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 REV__tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3344116210938 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 54.655 1 54.655 54.155 55.155 0 0 0 0 0.23508 1 10425 10425 10.824 2.2306 1 + 36652 25102 24685 24701 36076 36076 0.0877873024010114 QRRQLWWWRRR 11 Unmodified _QRRQLWWWRRR_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3248291015625 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 52.058 1 52.058 51.558 52.558 0 0 0 0 0.22632 1 9890 9890 0 0 1 + 36653 23332 24686 24702 36077 36077 0.12133826276203763 QRRQLWWWRRR 11 Unmodified _QRRQLWWWRRR_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3245239257812 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 120.74 1 120.74 120.24 121.24 0 0 0 0 0.22632 1 23798 23798 0 0 1 + 36654 23332 24686 24702 36078 36078 0.12133826276203763 QRRQLWWWRRR 11 Unmodified _QRRQLWWWRRR_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3206176757812 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 125.41 1 125.41 124.91 125.91 0 0 0 0 0.22632 1 24736 24736 0 0 1 + 36655 23332 24686 24702 36079 36079 0.12133826276203763 QRRQLWWWRRR 11 Unmodified _QRRQLWWWRRR_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.326904296875 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 144.6 1 144.6 144.1 145.1 0 0 0 0 0.22632 1 28893 28893 0.50596 0.41111 1 + 36656 23332 24686 24702 36080 36080 0.12133826276203763 QRRQLWWWRRR 11 Unmodified _QRRQLWWWRRR_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3281860351562 3 576.325702 1725.95528 0.053158 3.0636E-05 -2.7857 -0.0016055 -2.7326 -0.0015748 576.3252746097676 140.77 0.24426 136.12 135.95 136.19 -4.6493 8 6 2 0 0 0 0.66313 2 27799 27799;27801 0.08335 0.08335 1 2695500 + 36657 23332 24686 24702 36081;36082 36081 0.12133826276203763 QRRQLWWWRRR 11 Unmodified _QRRQLWWWRRR_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3250732421875 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 113.99 1 109.43 108.93 109.93 -4.555 0 0 0 0.22632 1 21883 21883 0 0 1 + 36658 23332 24686 24702 36083 36083 0.12133826276203763 QRRQLWWWRRR 11 Unmodified _QRRQLWWWRRR_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32958984375 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 141.81 1 136.82 136.32 137.32 -4.9877 0 0 0 0.22632 1 27317 27317 0.00056442 0.00056442 1 + 36659 23332 24686 24702 36084 36084 0.12133826276203763 QRRQLWWWRRR 11 Unmodified _QRRQLWWWRRR_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.32177734375 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 138.55 1 133.71 133.21 134.21 -4.8401 0 0 0 0.22632 1 26702 26702 0 0 1 + 36660 23332 24686 24702 36085 36085 0.12133826276203763 QRRRQRREREK 11 Unmodified _QRRRQRREREK_ 0 0 0 ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2770385742188 3 533.312121 1596.91454 NaN NaN NaN NaN NaN NaN NaN 109.45 1 109.45 108.95 109.95 0 0 0 0 0.22632 1 21519 21519 0.50596 0.41111 1 36661 5208 24687 24703 36086 36086 0.1399544016596792 QRRRQRREREK 11 Unmodified _QRRRQRREREK_ 0 0 0 ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2791137695312 3 533.312121 1596.91454 NaN NaN NaN NaN NaN NaN NaN 142.72 1 142.72 142.22 143.22 0 0 0 0 0.22632 1 28461 28461 0.026206 0.026206 1 36662 5208 24687 24703 36087 36087 0.1399544016596792 QRRRQRREREK 11 Unmodified _QRRRQRREREK_ 0 0 0 ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2692260742188 3 533.312121 1596.91454 NaN NaN NaN NaN NaN NaN NaN 132.73 1 127.88 127.38 128.38 -4.8527 0 0 0 0.22632 1 25499 25499 0.094841 0 1 36663 5208 24687 24703 36088 36088 0.1399544016596792 QRRRRRLWRW 10 Unmodified _QRRRRRLWRW_ 0 0 0 chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2;chr12:54283225-54283827|478|34.15|0.0|21.7|+|1|HNRNPA1,HNRNPA1|2 chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2 chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6864624023438 3 523.646776 1567.9185 NaN NaN NaN NaN NaN NaN NaN 144.89 1 140.22 139.72 140.72 -4.6694 0 0 0 0.22588 1 28706 28706 0.69767 0.24315 1 36664 535 24688 24704 36089 36089 0.15725574450334534 QRRRVKKRHL 10 Unmodified _QRRRVKKRHL_ 0 0 0 ST6GAL2|p.R178L|1|0.38|ENSG00000144057|chr2:106843445-106843445|C/A|missense_variant ST6GAL2|p.R178L|1|0.38|ENSG00000144057|chr2:106843445-106843445|C/A|missense_variant ST6GAL2|p.R178L|1|0.38|ENSG00000144057|chr2:106843445-106843445|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.2171936035156 4 344.976002 1375.8749 0.19582 6.7554E-05 0.21138 7.292E-05 0.4072 0.00014047 345.2268739282846 176.51 1.8549 171.63 170.35 172.21 -4.8739 76 52 2 0 0 0 0.91149 1 35131 35131 0 0 1 5036800 36665 25792 24689 24705 36090 36090 0.20199964953212657 QRRTWGWRVK 10 Unmodified _QRRTWGWRVK_ 0 0 0 REV__nc|ENSG00000158941|Q8N163-2|CCAR2 REV__nc|ENSG00000158941|Q8N163-2|CCAR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2289733886719 3 458.261817 1371.76362 NaN NaN NaN NaN NaN NaN NaN 128.39 1 123.76 123.26 124.26 -4.6292 0 0 0 2.8426 1 25313 25313 3.8763 0.80407 1 + 36666 24114 24690 24706 36091 36091 0.09260905525252383 QRRWPLEQRWW 11 Unmodified _QRRWPLEQRWW_ 0 0 0 PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7840576171875 3 547.623414 1639.84841 NaN NaN NaN NaN NaN NaN NaN 122.96 1 118.38 117.88 118.88 -4.5757 0 0 0 0.22632 1 24241 24241 0.00056442 0 1 36667 12753 24691 24707 36092 36092 0.05408231271189834 QRRWPLEQRWW 11 Unmodified _QRRWPLEQRWW_ 0 0 0 PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.76904296875 3 547.623414 1639.84841 0.13602 7.4489E-05 1.7418 0.00095383 1.8778 0.0010283 547.6242575566799 47.229 1.0047 44.36 43.978 44.983 -2.869 35 28 2 0 0 0 0.96197 1 8850 8850 2.6312 2.5668 1 1660900 36668 12753 24691 24707 36093 36093 0.05408231271189834 QRRWPLEQRWW 11 Unmodified _QRRWPLEQRWW_ 0 0 0 PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7720947265625 3 547.623414 1639.84841 NaN NaN NaN NaN NaN NaN NaN 164.6 1 159.55 159.05 160.05 -5.0446 0 0 0 0.22632 1 32113 32113 0.094841 0.094277 1 36669 12753 24691 24707 36094 36094 0.05408231271189834 QRRWPLEQRWW 11 Unmodified _QRRWPLEQRWW_ 0 0 0 PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.786865234375 3 547.623414 1639.84841 0.029874 1.636E-05 -1.4675 -0.00080362 -1.4376 -0.00078726 547.956328975185 53.369 0.16632 50.273 50.139 50.306 -3.0954 6 4 2 0 0 0 0.89126 1 9860 9860 0.094841 0 1 533050 36670 12753 24691 24707 36095 36095 0.05408231271189834 QRSFTNQVH 9 Unmodified _QRSFTNQVH_ 0 0 0 REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24 REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.1241760253906 3 372.856345 1115.5472 -0.1041 -3.8815E-05 -1.3858 -0.0005167 -1.4899 -0.00055552 372.8562314907019 22.615 0.38916 21.161 20.944 21.333 -1.4535 15 10 3 0 0 0 0.884 1 3628 3628 0.26902 0.26902 1 448670 + 36671 15387 24692 24708 36096 36096 -0.005946950990846744 QRSFTNQVH 9 Unmodified _QRSFTNQVH_ 0 0 0 REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24 REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 372.856345 1115.5472 -0.18644 -6.9516E-05 -0.18413 -6.8656E-05 -0.37058 -0.00013817 372.8562457441733 21.127 0.21061 21.127 20.984 21.194 0 -0.0032732 0.00037189 NaN 0.26902 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 348870 + 36672 15387 24692 24708 -0.005946950990846744 QRSFTNQVH 9 Unmodified _QRSFTNQVH_ 0 0 0 REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24 REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 372.856345 1115.5472 0.43197 0.00016106 -0.7141 -0.00026626 -0.28214 -0.0001052 372.85595707790156 22.656 0.27408 21.103 20.924 21.198 -1.5532 -0.027462 -0.00022091 NaN 0.26902 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 446690 + 36673 15387 24692 24708 -0.005946950990846744 QRSLSFLEV 9 Unmodified _QRSLSFLEV_ 0 0 0 REV__nc|ENSG00000166886|Q15742-3|NAB2 REV__nc|ENSG00000166886|Q15742-3|NAB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2019958496094 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 89.817 1 85.957 85.457 86.457 -3.8595 0 0 0 0.23508 1 17571 17571 3.8763 1.3778 1 + 36674 17884 24693 24709 36097 36097 0.0461712798901317 QRSLSFLEV 9 Unmodified _QRSLSFLEV_ 0 0 0 REV__nc|ENSG00000166886|Q15742-3|NAB2 REV__nc|ENSG00000166886|Q15742-3|NAB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 119.58 1 115.06 114.56 115.56 -4.5221 0 0 0 0.23508 1 23583 23583 4.1895 0.59301 1 + 36675 17884 24693 24709 36098 36098 0.0461712798901317 QRSLSFLEV 9 Unmodified _QRSLSFLEV_ 0 0 0 REV__nc|ENSG00000166886|Q15742-3|NAB2 REV__nc|ENSG00000166886|Q15742-3|NAB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018737792969 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 120.54 1 116.01 115.51 116.51 -4.5221 0 0 0 0.23508 1 23766 23766 4.5289 0 1 + 36676 17884 24693 24709 36099 36099 0.0461712798901317 QRSLSFLEV 9 Unmodified _QRSLSFLEV_ 0 0 0 REV__nc|ENSG00000166886|Q15742-3|NAB2 REV__nc|ENSG00000166886|Q15742-3|NAB2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 111.18 1 106.69 106.19 107.19 -4.4915 0 0 0 0.23508 1 21338 21338 4.1895 0.59301 1 + 36677 17884 24693 24709 36100 36100 0.0461712798901317 QRSWPVGV 8 Unmodified _QRSWPVGV_ 0 0 0 REV__ENST00000232978.12_1_3:42688350-42688413:+|nuORF REV__ENST00000232978.12_1_3:42688350-42688413:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1722717285156 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 103.07 1 99.052 98.552 99.552 -4.0212 0 0 0 0.21486 1 19817 19817 0.45834 0 1 + 36678 20070 24694 24710 36101 36101 0.026003378201494343 QRTHTGKKPY 10 Unmodified _QRTHTGKKPY_ 0 0 0 nc|ENSG00000196458|Q86T29-2|ZNF605;ENSG00000196458|ENST00000360187|ZNF605;ZNF71|p.E355K|1|0.15|ENSG00000197951|chr19:56622350-56622350|G/A|missense_variant nc|ENSG00000196458|Q86T29-2|ZNF605 nc|ENSG00000196458|Q86T29-2|ZNF605 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3116760253906 3 405.891278 1214.652 0.36017 0.00014619 -0.40482 -0.00016431 -0.044644 -1.8121E-05 405.8911386679841 29.934 0.4845 27.817 27.563 28.048 -2.1167 27 13 3 0 0 0 0.91149 1 5383 5383 1.9064 0 1 1021000 36679 7269 24695 24711 36102 36102 0.05326426377473581 QRTHTGKKPY 10 Unmodified _QRTHTGKKPY_ 0 0 0 nc|ENSG00000196458|Q86T29-2|ZNF605;ENSG00000196458|ENST00000360187|ZNF605;ZNF71|p.E355K|1|0.15|ENSG00000197951|chr19:56622350-56622350|G/A|missense_variant nc|ENSG00000196458|Q86T29-2|ZNF605 nc|ENSG00000196458|Q86T29-2|ZNF605 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.31201171875 3 405.891278 1214.652 0.3304 0.00013411 -0.28352 -0.00011508 0.046873 1.9025E-05 405.8910763148759 29.746 0.51809 27.853 27.583 28.101 -1.8928 25 14 2 0 0 0 0.91149 1 5082 5082 1.9064 0 1 933370 36680 7269 24695 24711 36103 36103 0.05326426377473581 QRTIFMFIDKL 11 Unmodified _QRTIFMFIDKL_ 0 0 0 REV__nc|ENSG00000083642|Q9NTI5-3|PDS5B REV__nc|ENSG00000083642|Q9NTI5-3|PDS5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 471.4960632324219 3 471.263724 1410.76934 NaN NaN NaN NaN NaN NaN NaN 159.59 1 159.59 159.09 160.09 0 0 0 0 0.22632 1 32045 32045 0.50596 0 1 + 36681 14455 24696 24712 36104 36104 0.08038823202059575 QRTLSETRNR 10 Unmodified _QRTLSETRNR_ 0 0 0 REV__nc|ENSG00000171243|Q6X4U4-2|SOSTDC1 REV__nc|ENSG00000171243|Q6X4U4-2|SOSTDC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7718505859375 2 630.841999 1259.66945 NaN NaN NaN NaN NaN NaN NaN 133.73 1 133.73 133.23 134.23 0 0 0 0 2.8426 1 26459 26459 0.013265 0.0073095 1 + 36682 24165 24697 24713 36105 36105 0.049997219124634285 QRTYDFYY 8 Unmodified _QRTYDFYY_ 0 0 0 ENSG00000124302|ENST00000650847|CHST8 ENSG00000124302|ENST00000650847|CHST8 ENSG00000124302|ENST00000650847|CHST8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 386.3236083984375 3 385.841701 1154.50327 NaN NaN NaN NaN NaN NaN NaN 160.42 1 155.19 154.69 155.69 -5.2299 0 0 0 0.21486 1 31149 31149 1.4819 0.85508 1 36683 3309 24698 24714 36106 36106 -0.06779724316083957 QRWERYRRE 9 Unmodified _QRWERYRRE_ 0 0 0 nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR nc|ENSG00000010310|P48546-2|GIPR nc|ENSG00000010310|P48546-2|GIPR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2410888671875 3 460.241081 1377.70141 NaN NaN NaN NaN NaN NaN NaN 41.274 1 38.785 38.285 39.285 -2.4896 0 0 0 0.19622 1 7403 7403 0.0033805 0.0019993 1 36684 1062 24699 24715 36107 36107 0.027671343862493814 QRWKRIRQRWK 11 Unmodified _QRWKRIRQRWK_ 0 0 0 ENSG00000267796|ENST00000301159|LIN37;ENST00000595455.1_1_19:36244761-36245372:+|nuORF ENSG00000267796|ENST00000301159|LIN37 ENSG00000267796|ENST00000301159|LIN37 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.76953125 3 547.662203 1639.96478 0.18111 9.9185E-05 -3.3254 -0.0018212 -3.1443 -0.001722 547.9943048669107 154.88 0.14325 149.6 149.53 149.68 -5.2854 5 3 2 0 0 0 0.96227 1 30025 30025 0.08335 0.08335 1 1110300 36685 7990 24700 24716 36108 36108 0.17039594561742888 QRWKRIRQRWK 11 Unmodified _QRWKRIRQRWK_ 0 0 0 ENSG00000267796|ENST00000301159|LIN37;ENST00000595455.1_1_19:36244761-36245372:+|nuORF ENSG00000267796|ENST00000301159|LIN37 ENSG00000267796|ENST00000301159|LIN37 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7786254882812 3 547.662203 1639.96478 0.40431 0.00022142 -0.58585 -0.00032085 -0.18154 -9.9423E-05 547.6630087483387 147.48 0.10333 142.42 142.35 142.46 -5.0595 4 2 2 0 0 0 0.89134 1 28543 28543 0.094841 0.094277 1 729000 36686 7990 24700 24716 36109 36109 0.17039594561742888 QRWRNWQRRKE 11 Unmodified _QRWRNWQRRKE_ 0 0 0 ENST00000291074.9_2_17:505039-505090:-|nuORF ENST00000291074.9_2_17:505039-505090:-|nuORF ENST00000291074.9_2_17:505039-505090:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78369140625 3 548.297701 1641.87127 0.34894 0.00019132 -1.2486 -0.00068459 -0.89963 -0.00049327 548.6328767906847 158.22 0.17616 153.42 153.3 153.47 -4.7952 5 4 2 0 0 0 0.89134 1 31470 31470 0 0 1 538410 36687 8476 24701 24717 36110 36110 0.07601250388643166 QRWRQERERER 11 Unmodified _QRWRQERERER_ 0 0 0 REV__ENST00000556564.5_1_14:89016912-89021018:-|nuORF REV__ENST00000556564.5_1_14:89016912-89021018:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3546752929688 2 814.92746 1627.84037 NaN NaN NaN NaN NaN NaN NaN 173.9 1 169 168.5 169.5 -4.8916 0 0 0 0.22632 1 34591 34591 0.094841 0.087559 1 + 36688 22997 24702 24718 36111 36111 0.05156052283768986 QRYILYWRKRF 11 Unmodified _QRYILYWRKRF_ 0 0 0 ZNF277|p.K246Nfs*87|1|0.16|ENSG00000198839|chr7:112330148-112330148|A/-|frameshift_variant;ENSG00000198839|ENST00000361822|ZNF277 ZNF277|p.K246Nfs*87|1|0.16|ENSG00000198839|chr7:112330148-112330148|A/-|frameshift_variant ZNF277|p.K246Nfs*87|1|0.16|ENSG00000198839|chr7:112330148-112330148|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.781005859375 3 543.643927 1627.90995 NaN NaN NaN NaN NaN NaN NaN 60.249 1 56.935 56.435 57.435 -3.3139 0 0 0 0.22632 1 11219 11219 0.00056442 0.00056442 1 36689 7506 24703 24719 36112 36112 0.12111162970450096 QRYWEWTPRIY 11 Unmodified _QRYWEWTPRIY_ 0 0 0 ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2726440429688 3 533.268525 1596.78375 NaN NaN NaN NaN NaN NaN NaN 48.051 1 48.051 47.551 48.551 0 0 0 0 0.22632 1 9068 9068 0.58532 0.47428 1 36690 8668 24704 24720 36113 36113 0.009226116745594481 QRYWEWTPRIY 11 Unmodified _QRYWEWTPRIY_ 0 0 0 ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.268798828125 3 533.268525 1596.78375 NaN NaN NaN NaN NaN NaN NaN 62.09 1 59.129 58.629 59.629 -2.9614 0 0 0 0.22632 1 11977 11977 0.172 0 1 36691 8668 24704 24720 36114 36114 0.009226116745594481 QRYWEWTPRIY 11 Unmodified _QRYWEWTPRIY_ 0 0 0 ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2661743164062 3 533.268525 1596.78375 NaN NaN NaN NaN NaN NaN NaN 169.4 1 164.61 164.11 165.11 -4.7898 0 0 0 0.22632 1 34314 34314 0.58532 0.35677 1 36692 8668 24704 24720 36115 36115 0.009226116745594481 QRYWEWTPRIY 11 Unmodified _QRYWEWTPRIY_ 0 0 0 ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2709350585938 3 533.268525 1596.78375 NaN NaN NaN NaN NaN NaN NaN 38.446 1 36.041 35.541 36.541 -2.4049 0 0 0 0.22632 1 6842 6842 0.11104 0 1 36693 8668 24704 24720 36116 36116 0.009226116745594481 QRYWEWTPRIY 11 Unmodified _QRYWEWTPRIY_ 0 0 0 ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2682495117188 3 533.268525 1596.78375 NaN NaN NaN NaN NaN NaN NaN 62.281 1 59.041 58.541 59.541 -3.2395 0 0 0 0.22632 1 11674 11674 0.172 0 1 36694 8668 24704 24720 36117 36117 0.009226116745594481 QRYWLPFRDL 10 Unmodified _QRYWLPFRDL_ 0 0 0 REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4 REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.247802734375 3 465.250695 1392.73025 NaN NaN NaN NaN NaN NaN NaN 93.426 1 93.426 92.926 93.926 0 0 0 0 2.8426 1 18279 18279 3.8763 0 1 + 36695 17051 24705 24721 36118 36118 0.04959858962706676 QRYWLPSWTWF 11 Unmodified _QRYWLPSWTWF_ 0 0 0 ENST00000399151.3_1_21:37642452-37650333:+|nuORF ENST00000399151.3_1_21:37642452-37650333:+|nuORF ENST00000399151.3_1_21:37642452-37650333:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3850708007812 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 127.31 1 127.31 126.81 127.81 0 0 0 0 0.23698 1 25128 25128 2.7352 1.2533 1 36696 9493 24706 24722 36119 36119 -0.005158718658549333 QRYWLPSWTWF 11 Unmodified _QRYWLPSWTWF_ 0 0 0 ENST00000399151.3_1_21:37642452-37650333:+|nuORF ENST00000399151.3_1_21:37642452-37650333:+|nuORF ENST00000399151.3_1_21:37642452-37650333:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.38525390625 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 132.1 1 127.25 126.75 127.75 -4.8527 0 0 0 0.23698 1 25372 25372 2.7352 1.2533 1 36697 9493 24706 24722 36120 36120 -0.005158718658549333 QRYWYMYNHNM 11 Unmodified _QRYWYMYNHNM_ 0 0 0 REV__nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6 REV__nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 803.33984375 2 803.33992 1604.66529 NaN NaN NaN NaN NaN NaN NaN 176.71 1 171.81 171.31 172.31 -4.9008 0 0 0 0.22632 1 35236 35236 0.094841 0 1 + 36698 24253 24707 24723 36121 36121 -0.1128582689709674 QSACCCCCCGT 11 Unmodified _QSACCCCCCGT_ 0 0 0 REV__ENST00000562592.5_1_16:57770947-57775680:+|nuORF REV__ENST00000562592.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2649536132812 2 541.138543 1080.26253 NaN NaN NaN NaN NaN NaN NaN 108.73 1 104.35 103.85 104.85 -4.3776 0 0 0 0.22632 1 21427 21427 0.00056442 0.00056442 1 + 36699 23066 24708 24724 36122 36122 -0.2743873054917003 QSALSELDV 9 Unmodified _QSALSELDV_ 0 0 0 REV__ENSG00000265203|ENST00000584701|RBP3 REV__ENSG00000265203|ENST00000584701|RBP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2449645996094 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 127.45 1 122.75 122.25 123.25 -4.6998 0 0 0 0.22519 1 24516 24516 16.149 3.6176 1 + 36700 19899 24709 24725 36123 36123 -0.005428329272831434 QSCCCCCCCSH 11 Unmodified _QSCCCCCCCSH_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2548828125 2 590.135478 1178.2564 NaN NaN NaN NaN NaN NaN NaN 152.94 1 147.67 147.17 148.17 -5.2669 0 0 0 0.22632 1 29646 29646 0 0 1 36701 9982 24710 24726 36124 36124 -0.3255957205233244 QSCCCCCCCSH 11 Unmodified _QSCCCCCCCSH_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2725830078125 2 590.135478 1178.2564 NaN NaN NaN NaN NaN NaN NaN 138.49 1 133.65 133.15 134.15 -4.84 0 0 0 0.23698 1 26690 26690 1.1933 0.88631 1 36702 9982 24710 24726 36125 36125 -0.3255957205233244 QSCDLAPKQG 10 Unmodified _QSCDLAPKQG_ 0 0 0 REV__nc|ENSG00000105486|P18858-2|LIG1 REV__nc|ENSG00000105486|P18858-2|LIG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6773071289062 2 523.750398 1045.48624 0.35933 0.0001882 1.6438 0.00086094 2.0031 0.0010491 523.7529823997047 50.52 0.097717 50.52 50.438 50.536 0 4 2 2 0 0 0 0.82238 1 9566 9566 17.113 4.5813 1 397190 + 36703 14994 24711 24727 36126 36126 -0.034679681935585904 QSCSNGQHEY 10 Unmodified _QSCSNGQHEY_ 0 0 0 FLG2|p.V1359Sfs*177|1|0.08|ENSG00000143520|chr1:152353711-152353711|C/-|frameshift_variant;FLG2|p.G1513Afs*23|1|0.04|ENSG00000143520|chr1:152353248-152353248|C/-|frameshift_variant;FLG2|p.S1813*|1|0.04|ENSG00000143520|chr1:152352348-152352348|G/-|frameshift_variant;FLG2|p.D1885Afs*43|1|0.04|ENSG00000143520|chr1:152352122-152352132|CACTTCACTGT/-|frameshift_variant;ENSG00000143520|ENST00000388718|FLG2;CON__Q5D862 FLG2|p.V1359Sfs*177|1|0.08|ENSG00000143520|chr1:152353711-152353711|C/-|frameshift_variant FLG2|p.V1359Sfs*177|1|0.08|ENSG00000143520|chr1:152353711-152353711|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3304443359375 2 576.722369 1151.43019 NaN NaN NaN NaN NaN NaN NaN 98.946 1 94.813 94.313 95.313 -4.1326 0 0 0 2.8426 1 19429 19429 0.26539 0.25943 1 + 36704 699 24712 24728 36127 36127 -0.13947221101011564 QSCYPKCCS 9 Unmodified _QSCYPKCCS_ 0 0 0 REV__ENSG00000254997|ENST00000528743|KRTAP5-9 REV__ENSG00000254997|ENST00000528743|KRTAP5-9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 340.47265625 3 340.131212 1017.37181 0.062449 2.1241E-05 1.0584 0.00036001 1.1209 0.00038125 340.1314402853867 54.305 1.8182 51.17 50.801 52.62 -3.1352 85 51 2 0 0 0 0.41081 1 10052 10052 1.2148 0.588 1 27419000 + 36705 19851 24713 24729 36128 36128 -0.1361831727151639 QSCYPKCCS 9 Unmodified _QSCYPKCCS_ 0 0 0 REV__ENSG00000254997|ENST00000528743|KRTAP5-9 REV__ENSG00000254997|ENST00000528743|KRTAP5-9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 340.131212 1017.37181 -0.49317 -0.00016774 1.5027 0.00051112 1.0096 0.00034338 340.1316475671033 54.315 2.1678 51.432 50.908 53.076 -2.8837 0.029108 -1.7408E-05 NaN 1.2148 124 62 2 NaN NaN NaN NaN 0 NaN NaN 0 26245000 + 36706 19851 24713 24729 -0.1361831727151639 QSCYPKCCS 9 Unmodified _QSCYPKCCS_ 0 0 0 REV__ENSG00000254997|ENST00000528743|KRTAP5-9 REV__ENSG00000254997|ENST00000528743|KRTAP5-9 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 340.131212 1017.37181 0.062449 2.1241E-05 1.0584 0.00036001 1.1209 0.00038125 340.1314402853867 54.305 1.8182 51.17 50.801 52.62 -3.1352 -0.23283 -0.00047075 NaN 1.2148 85 51 2 NaN NaN NaN NaN 0 NaN NaN 0 27419000 + 36707 19851 24713 24729 -0.1361831727151639 QSCYPKCCS 9 Unmodified _QSCYPKCCS_ 0 0 0 REV__ENSG00000254997|ENST00000528743|KRTAP5-9 REV__ENSG00000254997|ENST00000528743|KRTAP5-9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 340.131212 1017.37181 -0.71892 -0.00024453 1.8904 0.000643 1.1715 0.00039847 340.1317080397738 54.652 1.3998 51.514 50.816 52.216 -3.1377 0.11176 0.00037822 NaN 1.2148 77 39 2 NaN NaN NaN NaN 0 NaN NaN 0 19411000 + 36708 19851 24713 24729 -0.1361831727151639 QSDFKLRST 9 Unmodified _QSDFKLRST_ 0 0 0 REV__ENST00000321521.13_1_5:102537656-102537803:+|nuORF REV__ENST00000321521.13_1_5:102537656-102537803:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2622680664062 2 541.285463 1080.55637 0.3922 0.00021229 -0.18602 -0.00010069 0.20618 0.0001116 541.2852892120643 65.838 0.56025 62.555 62.23 62.791 -3.2832 22 15 2 0 0 0 0.61228 1 12333 12333 12.241 2.1667 1 1287200 + 36709 20552 24714 24730 36129 36129 0.019316534665676954 QSDGGGLLY 9 Unmodified _QSDGGGLLY_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;ENST00000418472.6_1_18:46856042-46938282:-|nuORF nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 910.4144897460938 1 909.431238 908.423961 0.57169 0.00051992 -0.06229 -5.6649E-05 0.5094 0.00046327 909.4309148638797 84.999 0.9847 84.999 84.52 85.505 0 41 27 2 0 0 0 0.19171 1 16630 16630 38.176 9.094 1 3785100 36710 4388 24715 24731 36130 36130 -0.033913712702315024 QSDGGGLLY 9 Unmodified _QSDGGGLLY_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;ENST00000418472.6_1_18:46856042-46938282:-|nuORF nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 909.431238 908.423961 0.11352 0.00010324 0.40496 0.00036828 0.51848 0.00047153 909.431421051954 88.702 1.1977 84.909 84.485 85.682 -3.7926 -0.042578 0.00025545 NaN 38.176 58 33 2 NaN NaN NaN NaN 0 NaN NaN 0 4201700 36711 4388 24715 24731 -0.033913712702315024 QSDGGGLLY 9 Unmodified _QSDGGGLLY_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;ENST00000418472.6_1_18:46856042-46938282:-|nuORF nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 909.431238 908.423961 0.62531 0.00056867 -0.15096 -0.00013729 0.47434 0.00043138 909.4308506289225 88.927 1.1011 84.932 84.534 85.636 -3.9953 -0.019518 -0.00025013 NaN 38.176 52 31 2 NaN NaN NaN NaN 0 NaN NaN 0 3319500 36712 4388 24715 24731 -0.033913712702315024 QSDGGGLLY 9 Unmodified _QSDGGGLLY_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;ENST00000418472.6_1_18:46856042-46938282:-|nuORF nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 909.431238 908.423961 0.35224 0.00032033 0.2548 0.00023172 0.60703 0.00055205 909.4311690226453 88.716 1.2289 84.966 84.537 85.766 -3.7501 0.014335 0.00011888 NaN 38.176 50 34 2 NaN NaN NaN NaN 0 NaN NaN 0 3673700 36713 4388 24715 24731 -0.033913712702315024 QSDKLNMQ 8 Unmodified _QSDKLNMQ_ 0 0 0 REV__AXIN2|p.T125Sfs*10|1|0.28|ENSG00000168646|chr17:65558231-65558247|TACTCGTAAAGTTTTGG/-|frameshift_variant REV__AXIN2|p.T125Sfs*10|1|0.28|ENSG00000168646|chr17:65558231-65558247|TACTCGTAAAGTTTTGG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7866516113281 2 482.231842 962.44913 NaN NaN NaN NaN NaN NaN NaN 64.467 1 61.47 60.97 61.97 -2.9975 0 0 0 0.19753 1 12469 12469 25.399 2.663 1 + 36714 13163 24716 24732 36131 36131 -0.03359639739301201 QSDLSLLRY 9 Unmodified _QSDLSLLRY_ 0 0 0 REV__ENST00000536984.6_2_18:63418077-63476947:+|nuORF REV__ENST00000536984.6_2_18:63418077-63476947:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7716064453125 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 124.32 1 119.74 119.24 120.24 -4.5757 0 0 0 0.20681 1 24512 24512 21.59 4.6479 1 + 36715 22819 24717 24733 36132 36132 0.03372824126381602 QSDMGREAAY 10 Unmodified _QSDMGREAAY_ 0 0 0 ENSG00000130748|ENST00000253047|TMEM160 ENSG00000130748|ENST00000253047|TMEM160 ENSG00000130748|ENST00000253047|TMEM160 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 565.732666015625 2 564.242938 1126.47132 0.21976 0.000124 -0.67791 -0.00038251 -0.45815 -0.00025851 564.2426349515163 31.398 0.80609 29.168 28.885 29.691 -2.2305 58 22 4 0 0 0 0.59928 1 5680 5680 19.257 7.7623 1 18777000 36716 3633 24718 24734 36133 36133 -0.08685460061542472 QSDMGREAAY 10 Unmodified _QSDMGREAAY_ 0 0 0 ENSG00000130748|ENST00000253047|TMEM160 ENSG00000130748|ENST00000253047|TMEM160 ENSG00000130748|ENST00000253047|TMEM160 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 564.242938 1126.47132 0.32309 0.0001823 -0.92326 -0.00052094 -0.60016 -0.00033864 564.2424850518122 29.144 0.83685 29.144 28.879 29.716 0 -0.034405 -0.0001857 NaN 19.257 53 23 4 NaN NaN NaN NaN 0 NaN NaN 0 15289000 36717 3633 24718 24734 -0.08685460061542472 QSDMGREAAY 10 Unmodified _QSDMGREAAY_ 0 0 0 ENSG00000130748|ENST00000253047|TMEM160 ENSG00000130748|ENST00000253047|TMEM160 ENSG00000130748|ENST00000253047|TMEM160 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 564.242938 1126.47132 0.27729 0.00015646 -0.68245 -0.00038507 -0.40517 -0.00022861 564.2425901169705 31.22 0.70949 29.194 28.879 29.589 -2.0264 0.01528 8.6048E-05 NaN 19.257 53 19 4 NaN NaN NaN NaN 0 NaN NaN 0 19178000 36718 3633 24718 24734 -0.08685460061542472 QSDMGREAAY 10 Unmodified _QSDMGREAAY_ 0 0 0 ENSG00000130748|ENST00000253047|TMEM160 ENSG00000130748|ENST00000253047|TMEM160 ENSG00000130748|ENST00000253047|TMEM160 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 564.242938 1126.47132 0.52581 0.00029669 -0.77427 -0.00043687 -0.24845 -0.00014019 564.2426035750528 31.357 0.87647 29.209 28.882 29.759 -2.1483 0.030283 -1.7563E-05 NaN 19.257 62 24 4 NaN NaN NaN NaN 0 NaN NaN 0 15271000 36719 3633 24718 24734 -0.08685460061542472 QSDNQYKVDY 10 Unmodified _QSDNQYKVDY_ 0 0 0 NEB|p.A1926V|1|0.04|ENSG00000183091|chr2:151662328-151662328|G/A|missense_variant NEB|p.A1926V|1|0.04|ENSG00000183091|chr2:151662328-151662328|G/A|missense_variant NEB|p.A1926V|1|0.04|ENSG00000183091|chr2:151662328-151662328|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7650146484375 2 630.280574 1258.5466 0.89979 0.00056712 -2.361 -0.0014881 -1.4612 -0.00092097 630.2788133819229 91.123 0.44197 87.246 86.978 87.42 -3.877 17 12 2 0 0 0 0.37059 1 17842 17842 32.786 8.9959 1 1516900 36720 12680 24719 24735 36134 36134 -0.07233579329454187 QSDNQYKVDY 10 Unmodified _QSDNQYKVDY_ 0 0 0 NEB|p.A1926V|1|0.04|ENSG00000183091|chr2:151662328-151662328|G/A|missense_variant NEB|p.A1926V|1|0.04|ENSG00000183091|chr2:151662328-151662328|G/A|missense_variant NEB|p.A1926V|1|0.04|ENSG00000183091|chr2:151662328-151662328|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7797241210938 2 630.280574 1258.5466 0.56038 0.00035319 -2.6143 -0.0016478 -2.0539 -0.0012946 630.7804719468007 91.131 0.48267 87.037 86.777 87.26 -4.0946 17 13 2 0 0 0 0.26497 1 17368 17368 39.95 3.4435 1 1375600 36721 12680 24719 24735 36135 36135 -0.07233579329454187 QSDSKSSKL 9 Unmodified _QSDSKSSKL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2554931640625 2 490.256371 978.498189 -0.30249 -0.0001483 -1.2728 -0.00062399 -1.5753 -0.00077228 490.2559528149082 51.401 0.28378 48.349 48.169 48.453 -3.0517 13 7 2 0 0 0 0.55979 1 9462 9462 15.847 1.0089 1 642380 36722 1957 24720 24736 36136 36136 0.008079718212911757 QSDVLRYV 8 Unmodified _QSDVLRYV_ 0 0 0 nc|ENSG00000154040|O75952-5|CABYR;ENSG00000154040|ENST00000399496|CABYR nc|ENSG00000154040|O75952-5|CABYR nc|ENSG00000154040|O75952-5|CABYR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2646484375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 48.013 1 48.013 47.513 48.513 0 0 0 0 0.19954 1 9059 9059 24.674 0 1 36723 4991 24721 24737 36137 36137 0.02332883409144415 QSDVLRYV 8 Unmodified _QSDVLRYV_ 0 0 0 nc|ENSG00000154040|O75952-5|CABYR;ENSG00000154040|ENST00000399496|CABYR nc|ENSG00000154040|O75952-5|CABYR nc|ENSG00000154040|O75952-5|CABYR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25579833984375 2 490.263999 978.513445 0.54171 0.00026558 -4.0405 -0.0019809 -3.4988 -0.0017153 490.26495839661084 46.854 0.5643 46.854 46.661 47.226 0 23 15 3 0 0 0 0.86749 1 8876 8876 21.747 3.6117 1 811140 36724 4991 24721 24737 36138 36138 0.02332883409144415 QSDVLRYV 8 Unmodified _QSDVLRYV_ 0 0 0 nc|ENSG00000154040|O75952-5|CABYR;ENSG00000154040|ENST00000399496|CABYR nc|ENSG00000154040|O75952-5|CABYR nc|ENSG00000154040|O75952-5|CABYR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.264892578125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 51.211 1 48.159 47.659 48.659 -3.0517 0 0 0 0.19954 1 9431 9431 24.674 0 1 36725 4991 24721 24737 36139 36139 0.02332883409144415 QSDVQPVGHDY 11 Unmodified _QSDVQPVGHDY_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7805786132812 2 622.780741 1243.54693 NaN NaN NaN NaN NaN NaN NaN 37.781 1 37.781 37.281 38.281 0 0 0 0 0.22765 1 6992 6992 10.151 4.4187 1 36726 1278 24722 24738 36140 36140 -0.06510159609592847 QSEELLCFI 9 Unmodified _QSEELLCFI_ 0 0 0 REV__ENSG00000205413|ENST00000379958|SAMD9 REV__ENSG00000205413|ENST00000379958|SAMD9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2649536132812 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 47 1 44.05 43.55 44.55 -2.9499 0 0 0 0.11195 1 8566 8566 36.127 11.453 1 + 36727 19592 24723 24739 36141 36141 -0.02089029248213592 QSEFSNRKR 9 Unmodified _QSEFSNRKR_ 0 0 0 REV__CMYA5|p.K1823Rfs*17|2|0.34|ENSG00000164309|chr5:79734227-79734227|A/-|frameshift_variant REV__CMYA5|p.K1823Rfs*17|2|0.34|ENSG00000164309|chr5:79734227-79734227|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32470703125 2 576.299436 1150.58432 NaN NaN NaN NaN NaN NaN NaN 69.519 1 65.983 65.483 66.483 -3.5362 0 0 0 0.22621 1 13088 13088 15.847 1.9411 1 + 36728 13455 24724 24740 36142 36142 0.015049764466539273 QSEIASMLY 9 Unmodified _QSEIASMLY_ 0 0 0 ENST00000587317.1_1_19:11277236-11281082:-|nuORF;nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2 ENST00000587317.1_1_19:11277236-11281082:-|nuORF ENST00000587317.1_1_19:11277236-11281082:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2627563476562 2 521.2497 1040.48485 -0.63866 -0.0003329 0.89149 0.00046469 0.25283 0.00013178 521.2501292489109 139.85 0.76761 134.9 134.39 135.15 -4.952 51 21 3 0 0 0 0.069179 5 26923 26851;26882;26923;26926;26940 67.187 38.106 1 9045600 36729 7346 24725 24741 36143;36144;36145;36146;36147 36145 -0.03377602282284897 QSEIASMLY 9 Unmodified _QSEIASMLY_ 0 0 0 ENST00000587317.1_1_19:11277236-11281082:-|nuORF;nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2 ENST00000587317.1_1_19:11277236-11281082:-|nuORF ENST00000587317.1_1_19:11277236-11281082:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2695922851562 2 521.2497 1040.48485 0.30617 0.00015959 -0.1172 -6.1091E-05 0.18897 9.8499E-05 521.2495651613939 139.7 0.77029 134.85 134.42 135.19 -4.8492 53 21 3 0 0 0 0.055376 1 26940 26940 47.987 39.074 1 8514700 36730 7346 24725 24741 36148 36148 -0.03377602282284897 QSEMRERQ 8 Unmodified _QSEMRERQ_ 0 0 0 PLGRKT|p.F61Lfs*8|1|0.41|ENSG00000107020|chr9:5361787-5361787|A/-|frameshift_variant;ENSG00000107020|ENST00000223864|PLGRKT PLGRKT|p.F61Lfs*8|1|0.41|ENSG00000107020|chr9:5361787-5361787|A/-|frameshift_variant PLGRKT|p.F61Lfs*8|1|0.41|ENSG00000107020|chr9:5361787-5361787|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.271484375 2 532.251097 1062.48764 1.091 0.00058066 -0.67256 -0.00035797 0.4184 0.00022269 532.2506193191916 24.718 1.5656 23.07 22.365 23.931 -1.6482 101 44 3 0 0 0 0.74818 1 4360 4360 7.2892 0 1 5178400 36731 2410 24726 24742 36149 36149 -0.04110334104780122 QSEYSRVRV 9 Unmodified _QSEYSRVRV_ 0 0 0 REV__ENSG00000084090|ENST00000337288|STARD7 REV__ENSG00000084090|ENST00000337288|STARD7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21630859375 3 375.2 1122.57817 -0.59326 -0.00022259 0.47376 0.00017775 -0.1195 -4.4837E-05 375.2001159220747 26.878 0.31232 24.956 24.776 25.088 -1.9222 14 8 3 0 0 0 0.64764 1 4480 4480 0.96228 0.26461 1 707240 + 36732 14462 24727 24743 36150 36150 0.02178458215144019 QSFGIFLAP 9 Unmodified _QSFGIFLAP_ 0 0 0 REV__SLC22A23|p.E648Sfs*36|1|0.22|ENSG00000137266|chr6:3273174-3273174|C/-|frameshift_variant REV__SLC22A23|p.E648Sfs*36|1|0.22|ENSG00000137266|chr6:3273174-3273174|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26568603515625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 46.248 1 46.248 45.748 46.748 0 0 0 0 0.19652 1 8709 8709 0.073264 0.0092761 1 + 36733 16384 24728 24744 36151 36151 0.027349729028514957 QSFVGKQCGPE 11 Unmodified _QSFVGKQCGPE_ 0 0 0 ENST00000483775.1_1_7:151273415-151329218:-|nuORF ENST00000483775.1_1_7:151273415-151329218:-|nuORF ENST00000483775.1_1_7:151273415-151329218:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.27490234375 2 590.27678 1178.53901 NaN NaN NaN NaN NaN NaN NaN 137.68 1 132.75 132.25 133.25 -4.9216 0 0 0 0.23151 1 26467 26467 7.1017 0.89594 1 36734 10420 24729 24745 36152 36152 -0.043120101307295045 QSGDDETKY 9 Unmodified _QSGDDETKY_ 0 0 0 PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7 PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant PCDHGA7|p.V757Sfs*12|1|0.31|ENSG00000253537|chr5:141385167-141385167|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2645874023438 2 521.719818 1041.42508 -0.36536 -0.00019062 0.91546 0.00047761 0.5501 0.000287 521.7204005063554 42.435 0.67627 39.716 39.485 40.161 -2.7191 34 18 2 0 0 0 0.60061 1 7911 7911 13.042 3.695 1 4799800 36735 7914 24730 24746 36153 36153 -0.09397201691990631 QSGHPRQDTY 10 Unmodified _QSGHPRQDTY_ 0 0 0 WDR62|p.R773Q|1|0.47|ENSG00000075702|chr19:36092796-36092796|G/A|missense_variant WDR62|p.R773Q|1|0.47|ENSG00000075702|chr19:36092796-36092796|G/A|missense_variant WDR62|p.R773Q|1|0.47|ENSG00000075702|chr19:36092796-36092796|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 396.8514404296875 3 396.851259 1187.53195 -0.039536 -1.569E-05 -1.5355 -0.00060937 -1.5751 -0.00062506 397.1849609178003 115.02 0.73981 110.71 110.27 111.01 -4.3135 23 20 2 0 0 0 0.48215 1 22144 22144 0.84494 0 1 1048800 36736 26577 24731 24747 36154 36154 -0.05431606686943269 QSGRLLELE 9 Unmodified _QSGRLLELE_ 0 0 0 REV__ENSG00000196878|ENST00000356082|LAMB3 REV__ENSG00000196878|ENST00000356082|LAMB3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2566528320312 2 522.787838 1043.56112 -0.18202 -9.5155E-05 0.20279 0.00010601 0.020772 1.0859E-05 522.787872090282 78.858 0.63013 75.348 75.029 75.659 -3.5102 25 17 2 0 0 0 0.71913 1 15364 15364 15.248 0 1 2841900 + 36737 19287 24732 24748 36155 36155 0.04108537609340601 QSHHNVFPD 9 Unmodified _QSHHNVFPD_ 0 0 0 GPNMB|p.I383Nfs*9|1|0.21|ENSG00000136235|chr7:23266607-23266608|-/A|frameshift_variant;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB GPNMB|p.I383Nfs*9|1|0.21|ENSG00000136235|chr7:23266607-23266608|-/A|frameshift_variant GPNMB|p.I383Nfs*9|1|0.21|ENSG00000136235|chr7:23266607-23266608|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2799682617188 2 540.746505 1079.47846 -0.0066169 -3.5781E-06 1.1339 0.00061314 1.1273 0.00060956 540.7470545935946 47.939 1.035 44.989 44.26 45.295 -2.9499 45 29 2 0 0 0 0.69192 1 8735 8735 10.074 3.3508 1 4654600 36738 3993 24733 24749 36156 36156 -0.058103593988107605 QSHKVLLH 8 Unmodified _QSHKVLLH_ 0 0 0 REV__ENSG00000127445|ENST00000247970|PIN1 REV__ENSG00000127445|ENST00000247970|PIN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2418518066406 2 481.282526 960.550499 NaN NaN NaN NaN NaN NaN NaN 124 1 119.41 118.91 119.91 -4.5926 0 0 0 0.23782 1 23864 23864 0.063987 0.055711 1 + 36739 15887 24734 24750 36157 36157 0.06864599745563282 QSHTQEQSH 9 Unmodified _QSHTQEQSH_ 0 0 0 REV__FLG2|p.G1513Afs*23|1|0.04|ENSG00000143520|chr1:152353248-152353248|C/-|frameshift_variant REV__FLG2|p.G1513Afs*23|1|0.04|ENSG00000143520|chr1:152353248-152353248|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2644653320312 2 541.236501 1080.45845 NaN NaN NaN NaN NaN NaN NaN 50.788 1 47.743 47.243 48.243 -3.0453 0 0 0 0.23508 1 9313 9313 11.64 1.5664 1 + + 36740 13549 24735 24751 36158 36158 -0.07856155129434228 QSILAERY 8 Unmodified _QSILAERY_ 0 0 0 REV__CCDC127|p.R111C|1|0.35|ENSG00000164366|chr5:205749-205749|G/A|missense_variant REV__CCDC127|p.R111C|1|0.35|ENSG00000164366|chr5:205749-205749|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2642517089844 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 37.129 1 37.129 36.629 37.629 0 0 0 0 0.21486 1 6859 6859 7.9102 0 1 + 36741 13280 24736 24752 36159 36159 0.023328834091330464 QSISVRPHY 9 Unmodified _QSISVRPHY_ 0 0 0 REV__ENST00000394963.8_1_12:50493795-50494071:+|nuORF REV__ENST00000394963.8_1_12:50493795-50494071:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7904663085938 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 58.654 1 55.744 55.244 56.244 -2.9105 0 0 0 0.19711 1 11267 11267 0.40827 0 1 + 36742 21254 24737 24753 36160 36160 0.022433770490579263 QSKEMCLNSY 10 Carbamidomethyl (C) _QSKEMC(Carbamidomethyl (C))LNSY_ QSKEMC(1)LNSY QSKEMC(46)LNSY 0 1 0 REV__ENST00000522080.5_1_3:169513982-169530312:-|nuORF REV__ENST00000522080.5_1_3:169513982-169530312:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7744140625 2 630.27338 1258.53221 0.34034 0.00021451 -0.67494 -0.0004254 -0.3346 -0.00021089 630.2729259864751 17.797 0.43405 17.797 17.589 18.023 0 23 11 3 0 0 0 0.18186 1 2829 2829 45.7 7.7256 1 2994600 + 36743 18246 24738 24754 36161 36161 21 -0.08671691073641341 QSKEMCLNSY 10 Carbamidomethyl (C) _QSKEMC(Carbamidomethyl (C))LNSY_ QSKEMC(1)LNSY QSKEMC(46)LNSY 0 1 0 REV__ENST00000522080.5_1_3:169513982-169530312:-|nuORF REV__ENST00000522080.5_1_3:169513982-169530312:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7745361328125 2 630.27338 1258.53221 -0.10106 -6.3696E-05 -0.122 -7.6894E-05 -0.22306 -0.00014059 630.2732009236338 19.037 0.42458 17.712 17.506 17.931 -1.3251 24 11 3 0 0 0 0.18186 1 2885 2885 45.7 7.7256 1 2057800 + 36744 18246 24738 24754 36162 36162 21 -0.08671691073641341 QSKEMCLNSY 10 Carbamidomethyl (C) _QSKEMC(Carbamidomethyl (C))LNSY_ 0 1 0 REV__ENST00000522080.5_1_3:169513982-169530312:-|nuORF REV__ENST00000522080.5_1_3:169513982-169530312:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 630.27338 1258.53221 0.34034 0.00021451 -0.67494 -0.0004254 -0.3346 -0.00021089 630.2729259864751 17.797 0.43405 17.797 17.589 18.023 0 0.05296 0.00026744 NaN 45.7 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2994600 + 36745 18246 24738 24754 21 -0.08671691073641341 QSKEMCLNSY 10 Carbamidomethyl (C) _QSKEMC(Carbamidomethyl (C))LNSY_ 0 1 0 REV__ENST00000522080.5_1_3:169513982-169530312:-|nuORF REV__ENST00000522080.5_1_3:169513982-169530312:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 630.27338 1258.53221 -0.10106 -6.3696E-05 -0.122 -7.6894E-05 -0.22306 -0.00014059 630.2732009236338 19.037 0.42458 17.712 17.506 17.931 -1.3251 -0.032003 0.00096445 NaN 45.7 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2057800 + 36746 18246 24738 24754 21 -0.08671691073641341 QSKFILALKVL 11 Unmodified _QSKFILALKVL_ 0 0 0 chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA;ENSG00000087586|ENST00000395915|AURKA chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7487182617188 2 630.407924 1258.80129 0.34655 0.00021847 0.23994 0.00015126 0.58648 0.00036972 630.4079734003254 86.489 0.52535 86.489 86.212 86.737 0 28 14 2 0 0 0 0.96102 1 16862 16862 1.1933 0 1 6283400 36747 546 24739 24755 36163 36163 0.18224558947486003 QSKFILALKVL 11 Unmodified _QSKFILALKVL_ 0 0 0 chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA;ENSG00000087586|ENST00000395915|AURKA chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7522583007812 2 630.407924 1258.80129 0.58023 0.00036578 -0.14794 -9.3265E-05 0.43229 0.00027252 630.4077904153177 90.661 0.6254 86.617 86.306 86.931 -4.0443 40 17 3 0 0 0 0.96102 1 17291 17291 2.9952 0 1 4621300 36748 546 24739 24755 36164 36164 0.18224558947486003 QSKKTKSI 8 Unmodified _QSKKTKSI_ 0 0 0 CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant;nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1 CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.1910095214844 3 307.190553 918.549831 NaN NaN NaN NaN NaN NaN NaN 101.09 1 101.09 100.59 101.59 0 0 0 0 0.21486 1 19834 19834 0.40072 0 1 36749 743 24740 24756 36165 36165 0.08729760305834589 QSKKTKSI 8 Unmodified _QSKKTKSI_ 0 0 0 CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant;nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1 CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.6756286621094 3 307.190553 918.549831 NaN NaN NaN NaN NaN NaN NaN 102.03 1 102.03 101.53 102.53 0 0 0 0 0.2396 1 20037 20037 0.12286 0 1 36750 743 24740 24756 36166 36166 0.08729760305834589 QSKQFFCHCN 10 Unmodified _QSKQFFCHCN_ 0 0 0 REV__ENST00000359358.8_1_18:30252788-30252947:-|nuORF REV__ENST00000359358.8_1_18:30252788-30252947:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7681274414062 2 621.26315 1240.51175 0.77632 0.0004823 0.18638 0.00011579 0.96271 0.00059809 621.2633297278929 80.461 4.4475 80.461 79.651 84.099 0 328 126 6 0 0 0 0.4551 1 15773 15773 0.26539 0 1 442300000 + 36751 20852 24741 24757 36167 36167 -0.09888816942748235 QSLGSSVIAP 10 Unmodified _QSLGSSVIAP_ 0 0 0 REV__nc|ENSG00000068878|Q14997-3|PSME4 REV__nc|ENSG00000068878|Q14997-3|PSME4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76885986328125 2 479.763832 957.513111 0.31321 0.00015027 0.44197 0.00021204 0.75517 0.00036231 479.7641536101503 47.531 1.4721 47.531 46.946 48.418 0 131 41 5 0 0 0 0.61548 1 8952 8952 18.373 1.2602 1 151620000 + 36752 14234 24742 24758 36168 36168 0.03265463689274384 QSLLNNPPP 9 Unmodified _QSLLNNPPP_ 0 0 0 REV__nc|ENSG00000277363|Q9C0H9-4|SRCIN1 REV__nc|ENSG00000277363|Q9C0H9-4|SRCIN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26483154296875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 46.567 1 46.567 46.067 47.067 0 0 0 0 0.22621 1 8772 8772 15.847 0 1 + 36753 19941 24743 24759 36169 36169 0.023328834091330464 QSLLSRWNPWS 11 Unmodified _QSLLSRWNPWS_ 0 0 0 ENSG00000188001|ENST00000345063|TPRG1 ENSG00000188001|ENST00000345063|TPRG1 ENSG00000188001|ENST00000345063|TPRG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2376708984375 3 458.570204 1372.68878 0.019729 9.047E-06 -0.59381 -0.00027231 -0.57409 -0.00026326 458.5698080964447 56.522 0.63804 53.346 53.045 53.683 -3.1761 40 17 3 0 0 0 0.80038 1 10551 10551 3.5927 0.74939 1 10159000 36754 7140 24744 24760 36170 36170 0.0173467820334281 QSLSPHPPG 9 Unmodified _QSLSPHPPG_ 0 0 0 REV__STX1B|p.T285Dfs*75|1|0.31|ENSG00000099365|chr16:30992835-30992836|-/C|frameshift_variant REV__STX1B|p.T285Dfs*75|1|0.31|ENSG00000099365|chr16:30992835-30992836|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2469177246094 2 460.235242 918.45593 0.13523 6.2239E-05 0.070144 3.2283E-05 0.20538 9.4521E-05 460.23519803356106 54.909 0.56173 54.909 54.561 55.122 0 21 15 2 0 0 0 0.46541 1 10492 10492 21.747 5.8995 1 785320 + 36755 24749 24745 24761 36171 36171 -0.006559587964261482 QSLSPHPPG 9 Unmodified _QSLSPHPPG_ 0 0 0 REV__STX1B|p.T285Dfs*75|1|0.31|ENSG00000099365|chr16:30992835-30992836|-/C|frameshift_variant REV__STX1B|p.T285Dfs*75|1|0.31|ENSG00000099365|chr16:30992835-30992836|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2268371582031 2 460.235242 918.45593 -0.18778 -8.6423E-05 0.54259 0.00024972 0.35481 0.0001633 460.23544590090756 57.762 0.56388 54.851 54.604 55.168 -2.9105 22 15 2 0 0 0 0.44262 1 11084 11084 23.148 7.3012 1 715910 + 36756 24749 24745 24761 36172 36172 -0.006559587964261482 QSLSPHPPG 9 Unmodified _QSLSPHPPG_ 0 0 0 REV__STX1B|p.T285Dfs*75|1|0.31|ENSG00000099365|chr16:30992835-30992836|-/C|frameshift_variant REV__STX1B|p.T285Dfs*75|1|0.31|ENSG00000099365|chr16:30992835-30992836|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2356262207031 2 460.235242 918.45593 0.072592 3.341E-05 0.07648 3.5199E-05 0.14907 6.8609E-05 460.2353432819689 58.086 0.58355 54.881 54.579 55.163 -3.2052 21 16 2 0 0 0 0.54354 1 10842 10842 16.942 1.0951 1 647520 + 36757 24749 24745 24761 36173 36173 -0.006559587964261482 QSLSPHPPG 9 Unmodified _QSLSPHPPG_ 0 0 0 REV__STX1B|p.T285Dfs*75|1|0.31|ENSG00000099365|chr16:30992835-30992836|-/C|frameshift_variant REV__STX1B|p.T285Dfs*75|1|0.31|ENSG00000099365|chr16:30992835-30992836|-/C|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.235242 918.45593 0.13523 6.2239E-05 0.070144 3.2283E-05 0.20538 9.4521E-05 460.23519803356106 54.909 0.56173 54.909 54.561 55.122 0 0.043281 -0.00024713 NaN 23.148 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 785320 + 36758 24749 24745 24761 -0.006559587964261482 QSLSPHPPG 9 Unmodified _QSLSPHPPG_ 0 0 0 REV__STX1B|p.T285Dfs*75|1|0.31|ENSG00000099365|chr16:30992835-30992836|-/C|frameshift_variant REV__STX1B|p.T285Dfs*75|1|0.31|ENSG00000099365|chr16:30992835-30992836|-/C|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.235242 918.45593 0.028603 1.3164E-05 1.1788 0.00054254 1.2074 0.0005557 460.2358384610171 58.073 0.56619 54.821 54.465 55.032 -3.2517 -0.044458 0.00077338 NaN 23.148 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 560700 + 36759 24749 24745 24761 -0.006559587964261482 QSNWDFETAY 10 Unmodified _QSNWDFETAY_ 0 0 0 REV__nc|ENSG00000164329|Q6PIY7-2|TENT2 REV__nc|ENSG00000164329|Q6PIY7-2|TENT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7618408203125 2 630.762017 1259.50948 NaN NaN NaN NaN NaN NaN NaN 159.85 1 154.62 154.12 155.12 -5.2299 0 0 0 2.8426 1 31030 31030 0.043787 0.042406 1 + 36760 17674 24746 24762 36174 36174 -0.10989250875218204 QSNYNWVG 8 Unmodified _QSNYNWVG_ 0 0 0 REV__ENST00000592891.1_1_19:55831331-55832446:-|nuORF REV__ENST00000592891.1_1_19:55831331-55832446:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.1481628417969 3 323.147125 966.419545 NaN NaN NaN NaN NaN NaN NaN 120.89 1 120.89 120.39 121.39 0 0 0 0 0.21486 1 23830 23830 0.45834 0 1 + 36761 23354 24747 24763 36175 36175 -0.06500835693145746 QSPAQEEEVDA 11 Unmodified _QSPAQEEEVDA_ 0 0 0 REV__ENST00000372406.5_1_9:132898991-132899180:+|nuORF REV__ENST00000372406.5_1_9:132898991-132899180:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2865600585938 2 601.762214 1201.50988 0.46239 0.00027825 3.0687 0.0018466 3.5311 0.0021249 602.264367922569 146.41 0.13551 141.29 141.21 141.34 -5.1108 6 3 2 0 0 0 0.65515 1 28307 28307 3.0723 1.1659 1 2788900 + 36762 21024 24748 24764 36176 36176 -0.0828187594602241 QSPAQEEEVDA 11 Unmodified _QSPAQEEEVDA_ 0 0 0 REV__ENST00000372406.5_1_9:132898991-132899180:+|nuORF REV__ENST00000372406.5_1_9:132898991-132899180:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 601.762214 1201.50988 0.46239 0.00027825 3.0687 0.0018466 3.5311 0.0021249 602.264367922569 146.41 0.13551 141.29 141.21 141.34 -5.1108 0.052563 -0.00013108 NaN 3.0723 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2788900 + 36763 21024 24748 24764 -0.0828187594602241 QSPEWVVA 8 Unmodified _QSPEWVVA_ 0 0 0 REV__ENST00000498618.5_1_3:58292148-58302269:+|nuORF REV__ENST00000498618.5_1_3:58292148-58302269:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23040771484375 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 93.209 1 93.209 92.709 93.709 0 0 0 0 0.23312 1 18235 18235 6.2058 2.6187 1 + 36764 22417 24749 24765 36177 36177 -0.010864770279567892 QSPQTLLE 8 Unmodified _QSPQTLLE_ 0 0 0 PPP1R16B|p.F497Sfs*24|1|0.06|ENSG00000101445|chr20:38918447-38918447|C/-|frameshift_variant;nc|ENSG00000101445|Q96T49-2|PPP1R16B;ENSG00000101445|ENST00000299824|PPP1R16B PPP1R16B|p.F497Sfs*24|1|0.06|ENSG00000101445|chr20:38918447-38918447|C/-|frameshift_variant PPP1R16B|p.F497Sfs*24|1|0.06|ENSG00000101445|chr20:38918447-38918447|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2309875488281 2 458.242732 914.470912 0.28314 0.00012975 0.26822 0.00012291 0.55135 0.00025265 458.24283143633727 30.194 1.8549 28.301 27.651 29.506 -1.8928 165 52 5 0 0 0 8448 1 5128 5128 3.2813 0 1 75773000 36765 2069 24750 24766 36178 36178 0.010254882809249466 QSPVSHPDP 9 Unmodified _QSPVSHPDP_ 0 0 0 REV__NECAB3|p.G268D|1|0.2|ENSG00000125967|chr20:33659573-33659573|C/T|missense_variant REV__NECAB3|p.G268D|1|0.2|ENSG00000125967|chr20:33659573-33659573|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7683410644531 2 482.230156 962.445759 0.24126 0.00011634 -0.24895 -0.00012005 -0.0076816 -3.7043E-06 482.2297059788554 42.134 1.1927 42.134 41.794 42.987 0 81 33 3 0 0 0 0.77734 1 8001 8001 9.3831 0 1 1777500 + 36766 24351 24751 24767 36179 36179 -0.03696566521659861 QSQHCPQGA 9 Unmodified _QSQHCPQGA_ 0 0 0 ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG ENSG00000188162|ENST00000399397|OTOG ENSG00000188162|ENST00000399397|OTOG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72802734375 2 478.206158 954.397763 0.075105 3.5916E-05 -0.31434 -0.00015032 -0.23923 -0.0001144 478.20595658293786 77.663 0.59033 74.004 73.678 74.268 -3.6588 23 16 2 0 0 0 0.45972 1 14769 14769 8.1555 7.7473 1 1618800 36767 7155 24752 24768 36180 36180 -0.08125963713359852 QSQIWRSG 8 Unmodified _QSQIWRSG_ 0 0 0 ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant;PDE4DIP|p.V841Lfs*4|1|0.41|ENSG00000178104|chr1:148978357-148978357|A/-|frameshift_variant;nc|ENSG00000178104|Q5VU43-9|PDE4DIP;nc|ENSG00000178104|Q5VU43-8|PDE4DIP;nc|ENSG00000178104|Q5VU43-12|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP ENSG00000178104|ENST00000695795|PDE4DIP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.1654052734375 3 321.166519 960.477728 NaN NaN NaN NaN NaN NaN NaN 22.432 1 22.432 21.932 22.932 0 0 0 0 0.22674 1 3794 3794 14.838 4.7643 1 36768 6556 24753 24769 36181 36181 -0.0040915404786119325 QSQQLEAL 8 Unmodified _QSQQLEAL_ 0 0 0 nc|ENSG00000039560|Q9P0K7-4|RAI14;RAI14|p.Q938Tfs*22|1|0.35|ENSG00000039560|chr5:34829743-34829744|AC/-|frameshift_variant;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14 nc|ENSG00000039560|Q9P0K7-4|RAI14 nc|ENSG00000039560|Q9P0K7-4|RAI14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2466125488281 2 458.740357 915.46616 0.14762 6.7718E-05 0.19993 9.1716E-05 0.34755 0.00015943 458.74035806124994 76.691 0.81287 73.057 72.646 73.459 -3.6337 70 22 4 0 0 0 0.59076 1 14591 14591 22.736 2.2827 1 17989000 36769 1191 24754 24770 36182 36182 0.005046041381433497 QSQSSVNVI 9 Unmodified _QSQSSVNVI_ 0 0 0 ENST00000485551.5_1_1:35906621-35936502:-|nuORF;KIAA0319L|p.W910Gfs*10|1|0.3|ENSG00000142687|chr1:35442957-35442957|A/-|frameshift_variant;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L;nc|ENSG00000142687|Q8IZA0-3|KIAA0319L ENST00000485551.5_1_1:35906621-35936502:-|nuORF ENST00000485551.5_1_1:35906621-35936502:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2474060058594 2 481.251089 960.487624 -0.20207 -9.7244E-05 -1.0036 -0.00048299 -1.2057 -0.00058023 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 0.25976 1 7342 7342 17.113 2.2746 1 85144000 36770 4439 24755 24771 36183 36183 0.005799891668516466 QSQTRRSG 8 Unmodified _QSQTRRSG_ 0 0 0 ENST00000453178.1_1_1:36182222-36184415:-|nuORF ENST00000453178.1_1_1:36182222-36184415:-|nuORF ENST00000453178.1_1_1:36182222-36184415:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2404479980469 2 460.238847 918.463141 NaN NaN NaN NaN NaN NaN NaN 37.617 1 35.148 34.648 35.648 -2.4688 0 0 0 0.23664 1 6952 6952 3.2813 3.273 1 36771 10003 24756 24772 36184 36184 0.0006477380400156107 QSRSASPIVV 10 Unmodified _QSRSASPIVV_ 0 0 0 REV__ENST00000372648.9_1_9:131571166-131571499:+|nuORF REV__ENST00000372648.9_1_9:131571166-131571499:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.267822265625 2 522.29583 1042.57711 0.18162 9.486E-05 -0.19993 -0.00010442 -0.018309 -9.5629E-06 522.2956361637711 21.09 0.38436 19.616 19.385 19.769 -1.4742 16 10 2 0 0 0 0.74994 1 3579 3579 5.7319 1.4026 1 723190 + 36772 21030 24757 24773 36185 36185 0.057522438462456194 QSRVHGAPQ 9 Unmodified _QSRVHGAPQ_ 0 0 0 REV__RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant REV__RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2556457519531 2 490.25704 978.499526 NaN NaN NaN NaN NaN NaN NaN 51.391 1 48.346 47.846 48.846 -3.0453 0 0 0 0.22962 1 9436 9436 14.838 0.25658 1 + 36773 18332 24758 24774 36186 36186 0.009416507007017572 QSSDKMLYCE 10 Unmodified _QSSDKMLYCE_ 0 0 0 ENSG00000100565|ENST00000689127|LRRC74A;nc|ENSG00000100565|Q0VAA2|LRRC74A ENSG00000100565|ENST00000689127|LRRC74A ENSG00000100565|ENST00000689127|LRRC74A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2800903320312 2 602.254656 1202.49476 NaN NaN NaN NaN NaN NaN NaN 95.854 1 95.854 95.354 96.354 0 0 0 0 2.8426 1 18776 18776 0.20733 0 1 36774 1991 24759 24775 36187 36187 -0.09838782339261343 QSSDPWFL 8 Unmodified _QSSDPWFL_ 0 0 0 REV__ENST00000430601.1_1_3:194346633-194349155:-|nuORF REV__ENST00000430601.1_1_3:194346633-194349155:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26715087890625 2 490.229625 978.444697 NaN NaN NaN NaN NaN NaN NaN 46.304 1 43.463 42.963 43.963 -2.8409 0 0 0 0.19492 1 8738 8738 26.341 8.2063 1 + 36775 21610 24760 24776 36188 36188 -0.04538780890561611 QSSDPWFL 8 Unmodified _QSSDPWFL_ 0 0 0 REV__ENST00000430601.1_1_3:194346633-194349155:-|nuORF REV__ENST00000430601.1_1_3:194346633-194349155:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2566833496094 2 490.229625 978.444697 NaN NaN NaN NaN NaN NaN NaN 53.597 1 50.51 50.01 51.01 -3.0876 0 0 0 0.21486 1 9867 9867 12.532 1.7076 1 + 36776 21610 24760 24776 36189 36189 -0.04538780890561611 QSSDPWFL 8 Unmodified _QSSDPWFL_ 0 0 0 REV__ENST00000430601.1_1_3:194346633-194349155:-|nuORF REV__ENST00000430601.1_1_3:194346633-194349155:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2698059082031 2 490.229625 978.444697 0.18428 9.034E-05 -3.0637 -0.0015019 -2.8794 -0.0014116 490.2274675437101 29.132 0.66229 27.136 26.797 27.459 -1.9962 31 18 3 0 0 0 0.69713 1 4924 4924 14.838 0.93222 1 467920 + 36777 21610 24760 24776 36190 36190 -0.04538780890561611 QSSLETHHY 9 Unmodified _QSSLETHHY_ 0 0 0 ENST00000549287.1_1_12:48360426-48362009:+|nuORF;nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENSG00000134291|ENST00000429772|TMEM106C ENST00000549287.1_1_12:48360426-48362009:+|nuORF ENST00000549287.1_1_12:48360426-48362009:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 367.5358581542969 3 367.836839 1100.48869 -0.22964 -8.447E-05 0.32497 0.00011954 0.095335 3.5068E-05 367.83693650494564 20.028 0.44683 20.028 19.791 20.238 0 29 12 3 0 0 0 0.47592 1 3273 3273 19.626 12.149 1 3938400 36778 3841 24761 24777 36191 36191 -0.057537964642278894 QSSLETHHY 9 Unmodified _QSSLETHHY_ 0 0 0 ENST00000549287.1_1_12:48360426-48362009:+|nuORF;nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENSG00000134291|ENST00000429772|TMEM106C ENST00000549287.1_1_12:48360426-48362009:+|nuORF ENST00000549287.1_1_12:48360426-48362009:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 367.836839 1100.48869 0.24639 9.063E-05 -0.26943 -9.9106E-05 -0.023043 -8.4762E-06 367.83671503749576 21.599 0.4263 20.124 19.876 20.303 -1.4742 0.04353 -0.00047161 NaN 19.626 30 11 3 NaN NaN NaN NaN 0 NaN NaN 0 5876300 36779 3841 24761 24777 -0.057537964642278894 QSSLETHHY 9 Unmodified _QSSLETHHY_ 0 0 0 ENST00000549287.1_1_12:48360426-48362009:+|nuORF;nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENSG00000134291|ENST00000429772|TMEM106C ENST00000549287.1_1_12:48360426-48362009:+|nuORF ENST00000549287.1_1_12:48360426-48362009:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 367.836839 1100.48869 -0.17688 -6.5062E-05 0.32487 0.0001195 0.148 5.4438E-05 367.83691408033354 21.474 0.44906 20.09 19.865 20.314 -1.3847 0.00899 0.00018421 NaN 19.626 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 6779900 36780 3841 24761 24777 -0.057537964642278894 QSSLRPMH 8 Unmodified _QSSLRPMH_ 0 0 0 ENST00000571697.5_1_17:7216077-7216449:-|nuORF ENST00000571697.5_1_17:7216077-7216449:-|nuORF ENST00000571697.5_1_17:7216077-7216449:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.83197021484375 3 319.164121 954.470534 -0.15426 -4.9235E-05 -0.52177 -0.00016653 -0.67603 -0.00021576 319.1638849240012 152.12 0.78381 147.37 147.02 147.81 -4.7523 33 21 2 0 0 0 8448 1 30254 30254 6.2058 0 1 3099600 36781 11425 24762 24778 36192 36192 -0.008522099199353761 QSSQLLSRY 9 Unmodified _QSSQLLSRY_ 0 0 0 REV__ENSG00000117593|ENST00000649689|DARS2 REV__ENSG00000117593|ENST00000649689|DARS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2846069335938 2 541.285463 1080.55637 0.3922 0.00021229 -0.18602 -0.00010069 0.20618 0.0001116 541.2852892120643 65.838 0.56025 62.555 62.23 62.791 -3.2832 22 15 2 0 0 0 0.65387 1 12431 12431 9.3831 0 1 1287200 + 36782 15525 24763 24779 36193 36193 0.019316534665676954 QSSTRSQWSH 10 Unmodified _QSSTRSQWSH_ 0 0 0 WDR91|p.D239Tfs*139|1|0.36|ENSG00000105875|chr7:135205938-135205938|C/-|frameshift_variant;WDR91|p.Q248Lfs*131|1|0.07|ENSG00000105875|chr7:135204416-135204417|-/TA|frameshift_variant WDR91|p.D239Tfs*139|1|0.36|ENSG00000105875|chr7:135205938-135205938|C/-|frameshift_variant WDR91|p.D239Tfs*139|1|0.36|ENSG00000105875|chr7:135205938-135205938|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2789306640625 2 602.2787 1202.54285 NaN NaN NaN NaN NaN NaN NaN 99.998 1 96.008 95.508 96.508 -3.9895 0 0 0 0.22573 1 19206 19206 15.248 1.3424 1 36783 26578 24764 24780 36194 36194 -0.05032204312669819 QSSVKQGW 8 Unmodified _QSSVKQGW_ 0 0 0 REV__ENST00000216038.5_1_22:32797740-32797788:-|nuORF REV__ENST00000216038.5_1_22:32797740-32797788:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23553466796875 2 460.235242 918.45593 -0.13137 -6.0463E-05 0.35241 0.00016219 0.22104 0.00010173 460.2353966781765 44.378 0.79656 41.588 41.051 41.847 -2.79 35 22 2 0 0 0 0.39104 1 8370 8370 32.786 9.6373 1 1821500 + 36784 20004 24765 24781 36195 36195 -0.006559587964261482 QSSVLSASSI 10 Unmodified _QSSVLSASSI_ 0 0 0 REV__nc|ENSG00000185591|P08047-3|SP1 REV__nc|ENSG00000185591|P08047-3|SP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26025390625 2 489.758746 977.50294 0.016437 8.0502E-06 -0.99059 -0.00048515 -0.97415 -0.0004771 489.75805134006555 99.9 0.97221 95.91 95.272 96.245 -3.9895 54 27 3 0 0 0 0.66827 1 19212 19212 14.405 0.49933 1 3630500 + 36785 18977 24766 24782 36196 36196 0.013288559640386666 QSTRGVPSM 9 Unmodified _QSTRGVPSM_ 0 0 0 REV__PLEKHA5|p.R147Q|1|0.26|ENSG00000052126|chr12:19257440-19257440|G/A|missense_variant REV__PLEKHA5|p.R147Q|1|0.26|ENSG00000052126|chr12:19257440-19257440|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7765808105469 2 481.739834 961.465115 0.25525 0.00012297 -0.51378 -0.00024751 -0.25853 -0.00012454 481.73972933102317 27.582 0.24479 25.827 25.685 25.93 -1.7552 10 6 2 0 0 0 0.58804 1 4603 4603 13.906 3.7227 1 623450 + 36786 24485 24767 24783 36197 36197 -0.01715933502396183 QSTTGVSHY 9 Unmodified _QSTTGVSHY_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN;VCAN|p.E2431Rfs*10|1|0.16|ENSG00000038427|chr5:83540290-83540291|-/G|frameshift_variant nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25775146484375 2 490.227613 978.440674 NaN NaN NaN NaN NaN NaN NaN 32.959 1 30.812 30.312 31.312 -2.1468 0 0 0 0.19657 1 5736 5736 4.897 1.6157 1 36787 1183 24768 24784 36198 36198 -0.04940870384291429 QSTTGVSHY 9 Unmodified _QSTTGVSHY_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN;VCAN|p.E2431Rfs*10|1|0.16|ENSG00000038427|chr5:83540290-83540291|-/G|frameshift_variant nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2763671875 2 490.227613 978.440674 NaN NaN NaN NaN NaN NaN NaN 52.925 1 49.83 49.33 50.33 -3.0954 0 0 0 0.22251 1 9778 9778 16.942 2.104 1 36788 1183 24768 24784 36199 36199 -0.04940870384291429 QSVEVYAMVY 10 Unmodified _QSVEVYAMVY_ 0 0 0 REV__nc|ENSG00000132773|Q96GM8-2|TOE1 REV__nc|ENSG00000132773|Q96GM8-2|TOE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 595.1377563476562 2 594.783907 1187.55326 0.48916 0.00029095 1.4441 0.00085892 1.9332 0.0011499 594.7848074628821 32.355 0.17825 30.207 30.137 30.316 -2.1483 6 4 2 0 0 0 0.91149 1 5612 5612 6.7232 3.1267 1 437780 + 36789 16133 24769 24785 36200 36200 -0.03301357702457608 QSVVKAESQA 10 Unmodified _QSVVKAESQA_ 0 0 0 REV__nc|ENSG00000132305|Q16891-3|IMMT REV__nc|ENSG00000132305|Q16891-3|IMMT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6964721679688 2 523.77747 1045.54039 0.015686 8.2158E-06 -0.24379 -0.00012769 -0.2281 -0.00011947 523.7773786600866 56.204 1.0122 56.204 55.904 56.916 0 44 28 3 0 0 0 0.55653 1 10788 10788 21.59 1.0092 1 2085300 + 36790 16104 24770 24786 36201 36201 0.019439472296653548 QSVVKAESQA 10 Unmodified _QSVVKAESQA_ 0 0 0 REV__nc|ENSG00000132305|Q16891-3|IMMT REV__nc|ENSG00000132305|Q16891-3|IMMT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7002563476562 2 523.77747 1045.54039 NaN NaN NaN NaN NaN NaN NaN 59.867 1 56.553 56.053 57.053 -3.3139 0 0 0 0.22573 1 11141 11141 15.248 2.206 1 + 36791 16104 24770 24786 36202 36202 0.019439472296653548 QSWLQRHML 9 Unmodified _QSWLQRHML_ 0 0 0 nc|ENSG00000139154|Q6ZN18|AEBP2;ENSG00000139154|ENST00000266508|AEBP2;nc|ENSG00000139154|Q6ZN18-3|AEBP2 nc|ENSG00000139154|Q6ZN18|AEBP2 nc|ENSG00000139154|Q6ZN18|AEBP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.2083740234375 3 400.209842 1197.6077 NaN NaN NaN NaN NaN NaN NaN 54.986 1 52.102 51.602 52.602 -2.8837 0 0 0 0.23508 1 10509 10509 8.1555 2.7528 1 36792 4226 24771 24787 36203 36203 0.01679698959628695 QSWVQFHLRPW 11 Unmodified _QSWVQFHLRPW_ 0 0 0 REV__B9D2|p.C97Lfs*6|1|0.33|ENSG00000123810|chr19:41354938-41354939|-/A|frameshift_variant REV__B9D2|p.C97Lfs*6|1|0.33|ENSG00000123810|chr19:41354938-41354939|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3848266601562 2 742.383303 1482.75205 NaN NaN NaN NaN NaN NaN NaN 168.33 1 163.54 163.04 164.04 -4.7898 0 0 0 0.22632 1 34019 34019 1.4074 1.4015 1 + 36793 13173 24772 24788 36204 36204 0.02998663711264271 QSWVVDATTA 10 Unmodified _QSWVVDATTA_ 0 0 0 REV__ENST00000562782.1_1_16:89180808-89181345:-|nuORF REV__ENST00000562782.1_1_16:89180808-89181345:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2786254882812 2 539.264196 1076.51384 0.58455 0.00031523 -0.61899 -0.0003338 -0.034433 -1.8568E-05 539.2637372918302 21.09 0.62955 19.616 19.35 19.98 -1.4742 58 17 5 0 0 0 0.49621 2 3555 3555;3563 29.082 1.4528 1 44342000 + 36794 23068 24773 24789 36205;36206 36205 -0.021357416616638147 QSWVVDATTA 10 Unmodified _QSWVVDATTA_ 0 0 0 REV__ENST00000562782.1_1_16:89180808-89181345:-|nuORF REV__ENST00000562782.1_1_16:89180808-89181345:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 539.264196 1076.51384 0.22295 0.00012023 -0.14633 -7.8911E-05 0.076616 4.1316E-05 539.2639788634172 19.607 0.85993 19.607 19.31 20.17 0 0.012305 0.00018643 NaN 29.082 74 24 5 NaN NaN NaN NaN 0 NaN NaN 0 50582000 + 36795 23068 24773 24789 -0.021357416616638147 QSWVVDATTA 10 Unmodified _QSWVVDATTA_ 0 0 0 REV__ENST00000562782.1_1_16:89180808-89181345:-|nuORF REV__ENST00000562782.1_1_16:89180808-89181345:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 539.264196 1076.51384 -0.072761 -3.9237E-05 -0.13995 -7.547E-05 -0.21271 -0.00011471 539.263934503281 20.945 0.76629 19.561 19.341 20.108 -1.3847 -0.033641 0.00019331 NaN 29.082 69 21 5 NaN NaN NaN NaN 0 NaN NaN 0 41624000 + 36796 23068 24773 24789 -0.021357416616638147 QSYHQVAP 8 Unmodified _QSYHQVAP_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25885009765625 2 465.227417 928.44028 NaN NaN NaN NaN NaN NaN NaN 55.969 1 52.793 52.293 53.293 -3.1761 0 0 0 0.21039 1 10403 10403 16.942 4.4107 1 36797 7250 24774 24790 36207 36207 -0.026802453134791904 QTAAGHRFAAL 11 Unmodified _QTAAGHRFAAL_ 0 0 0 REV__ENST00000552141.5_1_12:49496062-49496146:-|nuORF REV__ENST00000552141.5_1_12:49496062-49496146:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2068786621094 3 381.540357 1141.59924 -0.034007 -1.2975E-05 0.068564 2.616E-05 0.034557 1.3185E-05 381.54036753478783 19.825 0.34303 18.429 18.276 18.619 -1.3966 28 9 4 0 0 0 0.70375 1 3267 3267 6.2344 0.45093 1 8406000 + 36798 20256 24775 24791 36208 36208 0.034104683146551906 QTAAGHRFAAL 11 Unmodified _QTAAGHRFAAL_ 0 0 0 REV__ENST00000552141.5_1_12:49496062-49496146:-|nuORF REV__ENST00000552141.5_1_12:49496062-49496146:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 381.540357 1141.59924 -0.18431 -7.0321E-05 0.17045 6.5033E-05 -0.013859 -5.2877E-06 381.5404073729801 18.247 0.37894 18.247 18.023 18.402 0 -0.087669 1.0414E-05 NaN 6.2344 31 10 4 NaN NaN NaN NaN 0 NaN NaN 0 11699000 + 36799 20256 24775 24791 0.034104683146551906 QTAAGHRFAAL 11 Unmodified _QTAAGHRFAAL_ 0 0 0 REV__ENST00000552141.5_1_12:49496062-49496146:-|nuORF REV__ENST00000552141.5_1_12:49496062-49496146:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 381.540357 1141.59924 -0.034007 -1.2975E-05 0.068564 2.616E-05 0.034557 1.3185E-05 381.54036753478783 19.825 0.34303 18.429 18.276 18.619 -1.3966 0.094211 -0.00010621 NaN 6.2344 28 9 4 NaN NaN NaN NaN 0 NaN NaN 0 8406000 + 36800 20256 24775 24791 0.034104683146551906 QTAEETAFVV 10 Unmodified _QTAEETAFVV_ 0 0 0 DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7843017578125 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 19.877 1 18.481 17.981 18.981 -1.3966 0 0 0 0.19577 1 3295 3295 29.082 3.6823 1 36801 901 24776 24792 36209 36209 -0.01386874864465426 QTAEETAFVV 10 Unmodified _QTAEETAFVV_ 0 0 0 DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.772705078125 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 20.36 1 18.963 18.463 19.463 -1.3966 0 0 0 0.22588 1 3400 3400 7.609 1.4032 1 36802 901 24776 24792 36210 36210 -0.01386874864465426 QTAEETAFVV 10 Unmodified _QTAEETAFVV_ 0 0 0 DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7664794921875 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 19.576 1 18.251 17.751 18.751 -1.3251 0 0 0 0.12865 1 2991 2991 39.95 10.109 1 36803 901 24776 24792 36211 36211 -0.01386874864465426 QTAEETAFVV 10 Unmodified _QTAEETAFVV_ 0 0 0 DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7797241210938 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 19.635 1 18.31 17.81 18.81 -1.3251 0 0 0 0.10883 1 3003 3003 47.749 9.5731 1 36804 901 24776 24792 36212 36212 -0.01386874864465426 QTAEETAFVV 10 Unmodified _QTAEETAFVV_ 0 0 0 DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant DYNLT1|p.A6T|1|0.52|ENSG00000146425|chr6:158644693-158644693|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7740478515625 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 19.682 1 18.357 17.857 18.857 -1.3251 0 0 0 0.15474 1 3014 3014 36.127 4.8587 1 36805 901 24776 24792 36213 36213 -0.01386874864465426 QTDCAPNNGY 10 Unmodified _QTDCAPNNGY_ 0 0 0 NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P141Sfs*12|1|0.33|ENSG00000103512|chr16:14846592-14846593|-/AG|frameshift_variant NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.269287109375 2 541.714013 1081.41347 0.68383 0.00037044 -0.64828 -0.00035118 0.035552 1.9259E-05 541.7135384125036 30.424 0.70385 28.307 27.941 28.645 -2.1167 38 19 3 0 0 0 0.46818 1 5515 5515 34.402 21.359 1 1353000 36806 2176 24777 24793 36214 36214 -0.12397721986985744 QTDCAPNNGY 10 Unmodified _QTDCAPNNGY_ 0 0 0 NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P141Sfs*12|1|0.33|ENSG00000103512|chr16:14846592-14846593|-/AG|frameshift_variant NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2677001953125 2 541.714013 1081.41347 0.37869 0.00020514 -0.28454 -0.00015414 0.094149 5.1002E-05 541.7136780383577 30.337 0.45602 28.444 28.171 28.627 -1.8928 20 12 2 0 0 0 0.84281 1 5227 5227 9.3831 1.473 1 694540 36807 2176 24777 24793 36215 36215 -0.12397721986985744 QTDDRFHEM 9 Unmodified _QTDDRFHEM_ 0 0 0 nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.2911682128906 3 393.50135 1177.48222 -0.61913 -0.00024363 2.7702 0.0010901 2.151 0.00084643 393.5024607808565 36.225 1.1572 33.831 33.417 34.575 -2.3938 74 32 3 0 0 0 0.8799 1 6718 6718 0 0 1 3161800 36808 3687 24778 24794 36216 36216 -0.09942057687248962 QTDDRFHEM 9 Unmodified _QTDDRFHEM_ 0 0 0 nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2501220703125 2 589.748387 1177.48222 0.54154 0.00031937 0.41673 0.00024577 0.95828 0.00056514 589.7487960725068 36.218 0.4549 33.87 33.478 33.933 -2.3479 19 12 2 0 0 0 0.17396 1 6383 6383 40.725 19.135 1 718140 36809 3687 24778 24794 36217 36217 -0.09942057687248962 QTDDRFHEM 9 Unmodified _QTDDRFHEM_ 0 0 0 nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2523803710938 2 589.748387 1177.48222 0.29246 0.00017248 3.573 0.0021072 3.8655 0.0022797 589.7507236093086 36.14 0.95291 33.864 33.525 34.478 -2.2766 36 26 2 0 0 0 0.29284 2 6376 6329;6376 32.037 12.676 1 703820 36810 3687 24778 24794 36218;36219 36219 -0.09942057687248962 QTDDRFHEM 9 Unmodified _QTDDRFHEM_ 0 0 0 nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 589.748387 1177.48222 0.34568 0.00020386 1.1617 0.00068509 1.5073 0.00088895 589.7489907376162 33.775 0.28401 33.775 33.58 33.864 0 -0.06092 -0.00022456 NaN 40.725 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 651120 36811 3687 24778 24794 -0.09942057687248962 QTDFEDGIR 9 Unmodified _QTDFEDGIR_ 0 0 0 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2796630859375 2 540.751453 1079.48835 0.11168 6.0389E-05 0.18096 9.7855E-05 0.29264 0.00015824 540.7514998898482 24.614 0.65127 23.08 22.751 23.402 -1.5342 38 18 3 0 0 0 0.12542 1 4034 4034 65.235 10.461 1 3680500 36812 6312 24779 24795 36220 36220 -0.04821216184109289 QTDIKLSRY 9 Unmodified _QTDIKLSRY_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2081604003906 3 375.208384 1122.60332 0.051707 1.9401E-05 -0.20865 -7.8288E-05 -0.15694 -5.8887E-05 375.2082743735327 52.657 0.42681 49.57 49.299 49.726 -3.0876 17 11 2 0 0 0 0.5354 1 9701 9701 17.443 11.208 1 1158500 36813 4201 24780 24796 36221 36221 0.04692513017721467 QTDIKLSRY 9 Unmodified _QTDIKLSRY_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2082214355469 3 375.208384 1122.60332 -0.73786 -0.00027685 0.72276 0.00027119 -0.015099 -5.6651E-06 375.20867895121705 52.578 0.38578 49.483 49.304 49.69 -3.0954 19 10 3 0 0 0 0.60489 3 9698 9680;9698;9744 8.9762 4.7867 1 1102800 36814 4201 24780 24796 36222;36223;36224 36223 0.04692513017721467 QTDKLVIAILF 11 Unmodified _QTDKLVIAILF_ 0 0 0 REV__CON__Q9TTE1 REV__CON__Q9TTE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7521362304688 2 630.881739 1259.74892 NaN NaN NaN NaN NaN NaN NaN 85.697 1 81.97 81.47 82.47 -3.7266 0 0 0 0.23018 1 16375 16375 8.1555 4.559 1 + + 36815 13560 24781 24797 36225 36225 0.12943975813868747 QTDLHEHPLY 10 Unmodified _QTDLHEHPLY_ 0 0 0 ENST00000485741.6_1_7:72418925-72423926:-|nuORF;ENST00000388955.8_1_7:72418925-72423926:-|nuORF;nc|ENSG00000290831|Q63ZY6-2|NSUN5P2;nc|ENSG00000290831|Q63ZY6-5|NSUN5P2;nc|ENSG00000290831|Q63ZY6-6|NSUN5P2;nc|ENSG00000290831|Q63ZY6|NSUN5P2;nc|ENSG00000130305|Q96P11-3|NSUN5;ENST00000471461.5_1_7:72717735-72721871:-|nuORF;ENST00000444583.6_1_7:72418925-72425243:-|nuORF;nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5 ENST00000485741.6_1_7:72418925-72423926:-|nuORF;nc|ENSG00000130305|Q96P11|NSUN5 ENST00000485741.6_1_7:72418925-72423926:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 418.48162841796875 3 418.20341 1251.5884 -0.3146 -0.00013157 0.45926 0.00019206 0.14466 6.0499E-05 418.2035732166153 56.511 0.85106 53.335 53.045 53.896 -3.1761 53 23 3 0 0 0 0.96645 1 10508 10508 63.167 62.759 1 5559500 36816 9349;3599 24782 24798 36226 36226 -0.027329788502811425 QTDLHEHPLY 10 Unmodified _QTDLHEHPLY_ 0 0 0 ENST00000485741.6_1_7:72418925-72423926:-|nuORF;ENST00000388955.8_1_7:72418925-72423926:-|nuORF;nc|ENSG00000290831|Q63ZY6-2|NSUN5P2;nc|ENSG00000290831|Q63ZY6-5|NSUN5P2;nc|ENSG00000290831|Q63ZY6-6|NSUN5P2;nc|ENSG00000290831|Q63ZY6|NSUN5P2;nc|ENSG00000130305|Q96P11-3|NSUN5;ENST00000471461.5_1_7:72717735-72721871:-|nuORF;ENST00000444583.6_1_7:72418925-72425243:-|nuORF;nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5 ENST00000485741.6_1_7:72418925-72423926:-|nuORF;nc|ENSG00000130305|Q96P11|NSUN5 ENST00000485741.6_1_7:72418925-72423926:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 418.20341 1251.5884 0.081747 3.4187E-05 0.0026221 1.0966E-06 0.084369 3.5283E-05 418.20338737702843 52.949 1.2064 52.949 52.608 53.814 0 -0.30949 -0.00026734 NaN 63.167 62 33 2 NaN NaN NaN NaN 0 NaN NaN 0 5893900 36817 9349;3599 24782 24798 -0.027329788502811425 QTDLHEHPLY 10 Unmodified _QTDLHEHPLY_ 0 0 0 ENST00000485741.6_1_7:72418925-72423926:-|nuORF;ENST00000388955.8_1_7:72418925-72423926:-|nuORF;nc|ENSG00000290831|Q63ZY6-2|NSUN5P2;nc|ENSG00000290831|Q63ZY6-5|NSUN5P2;nc|ENSG00000290831|Q63ZY6-6|NSUN5P2;nc|ENSG00000290831|Q63ZY6|NSUN5P2;nc|ENSG00000130305|Q96P11-3|NSUN5;ENST00000471461.5_1_7:72717735-72721871:-|nuORF;ENST00000444583.6_1_7:72418925-72425243:-|nuORF;nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5 ENST00000485741.6_1_7:72418925-72423926:-|nuORF;nc|ENSG00000130305|Q96P11|NSUN5 ENST00000485741.6_1_7:72418925-72423926:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 418.20341 1251.5884 -0.32403 -0.00013551 0.5254 0.00021973 0.20138 8.4217E-05 418.203588001483 56.223 1.0286 53.328 52.758 53.786 -2.8944 0.069913 0.00038855 NaN 63.167 61 29 3 NaN NaN NaN NaN 0 NaN NaN 0 6931700 36818 9349;3599 24782 24798 -0.027329788502811425 QTDLHEHPLY 10 Unmodified _QTDLHEHPLY_ 0 0 0 ENST00000485741.6_1_7:72418925-72423926:-|nuORF;ENST00000388955.8_1_7:72418925-72423926:-|nuORF;nc|ENSG00000290831|Q63ZY6-2|NSUN5P2;nc|ENSG00000290831|Q63ZY6-5|NSUN5P2;nc|ENSG00000290831|Q63ZY6-6|NSUN5P2;nc|ENSG00000290831|Q63ZY6|NSUN5P2;nc|ENSG00000130305|Q96P11-3|NSUN5;ENST00000471461.5_1_7:72717735-72721871:-|nuORF;ENST00000444583.6_1_7:72418925-72425243:-|nuORF;nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5 ENST00000485741.6_1_7:72418925-72423926:-|nuORF;nc|ENSG00000130305|Q96P11|NSUN5 ENST00000485741.6_1_7:72418925-72423926:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 418.20341 1251.5884 0.04267 1.7845E-05 -0.062111 -2.5975E-05 -0.019441 -8.1302E-06 418.2033619016051 56.611 1.1237 53.422 52.704 53.827 -3.1895 0.16346 -0.00034855 NaN 63.167 56 31 2 NaN NaN NaN NaN 0 NaN NaN 0 5570600 36819 9349;3599 24782 24798 -0.027329788502811425 QTDPVTLQY 9 Unmodified _QTDPVTLQY_ 0 0 0 nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8-2|HELZ2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2728881835938 2 532.766571 1063.51859 0.4071 0.00021689 4.1023 0.0021856 4.5094 0.0024025 532.7690931245863 100.93 1.1426 96.941 96.069 97.212 -3.9895 82 32 4 0 0 0 0.015957 2 19359 19359;19407 96.367 60.24 1 21139000 36820 3619 24783 24799 36227;36228 36227 -0.010628575188775358 QTDRENQNEA 10 Unmodified _QTDRENQNEA_ 0 0 0 nc|ENSG00000133863|Q9BXT5|TEX15;TEX15|p.S2464Vfs*33|1|0.4|ENSG00000133863|chr8:30837745-30837745|T/-|frameshift_variant;ENSG00000133863|ENST00000643185|TEX15;TEX15|p.T1171Lfs*14|1|0.19|ENSG00000133863|chr8:30845507-30845507|T/-|frameshift_variant;TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant;TEX15|p.R1708Kfs*6|1|0.41|ENSG00000133863|chr8:30843895-30843896|-/T|frameshift_variant;TEX15|p.K1907Nfs*14|1|0.11|ENSG00000133863|chr8:30843297-30843297|T/-|frameshift_variant;TEX15|p.K898Nfs*15|1|0.27|ENSG00000133863|chr8:30846324-30846324|T/-|frameshift_variant;TEX15|p.K1005Rfs*15|1|0.05|ENSG00000133863|chr8:30846005-30846006|-/CG|frameshift_variant;TEX15|p.A1007Lfs*12|3|0.21|ENSG00000133863|chr8:30846000-30846000|T/-|frameshift_variant nc|ENSG00000133863|Q9BXT5|TEX15;TEX15|p.A1007Lfs*12|3|0.21|ENSG00000133863|chr8:30846000-30846000|T/-|frameshift_variant nc|ENSG00000133863|Q9BXT5|TEX15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2817993164062 2 602.76308 1203.51161 0.43506 0.00026224 -1.9185 -0.0011564 -1.4834 -0.00089416 602.7622886788789 110.46 0.45341 110.46 110.26 110.71 0 19 12 2 0 0 0 0.51622 1 21749 21749 23.79 5.6434 1 1723200 36821 3819;25835 24784 24800 36229 36229 -0.08200822137428077 QTDRENQNEA 10 Unmodified _QTDRENQNEA_ 0 0 0 nc|ENSG00000133863|Q9BXT5|TEX15;TEX15|p.S2464Vfs*33|1|0.4|ENSG00000133863|chr8:30837745-30837745|T/-|frameshift_variant;ENSG00000133863|ENST00000643185|TEX15;TEX15|p.T1171Lfs*14|1|0.19|ENSG00000133863|chr8:30845507-30845507|T/-|frameshift_variant;TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant;TEX15|p.R1708Kfs*6|1|0.41|ENSG00000133863|chr8:30843895-30843896|-/T|frameshift_variant;TEX15|p.K1907Nfs*14|1|0.11|ENSG00000133863|chr8:30843297-30843297|T/-|frameshift_variant;TEX15|p.K898Nfs*15|1|0.27|ENSG00000133863|chr8:30846324-30846324|T/-|frameshift_variant;TEX15|p.K1005Rfs*15|1|0.05|ENSG00000133863|chr8:30846005-30846006|-/CG|frameshift_variant;TEX15|p.A1007Lfs*12|3|0.21|ENSG00000133863|chr8:30846000-30846000|T/-|frameshift_variant nc|ENSG00000133863|Q9BXT5|TEX15;TEX15|p.A1007Lfs*12|3|0.21|ENSG00000133863|chr8:30846000-30846000|T/-|frameshift_variant nc|ENSG00000133863|Q9BXT5|TEX15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2739868164062 2 602.76308 1203.51161 0.56261 0.00033912 1.1705 0.00070554 1.7331 0.0010447 602.7639679058997 115.28 0.56451 110.73 110.51 111.08 -4.555 32 15 3 0 0 0 0.45099 1 22154 22154 18.373 2.6345 1 3715500 36822 3819;25835 24784 24800 36230 36230 -0.08200822137428077 QTDRENQNEA 10 Unmodified _QTDRENQNEA_ 0 0 0 nc|ENSG00000133863|Q9BXT5|TEX15;TEX15|p.S2464Vfs*33|1|0.4|ENSG00000133863|chr8:30837745-30837745|T/-|frameshift_variant;ENSG00000133863|ENST00000643185|TEX15;TEX15|p.T1171Lfs*14|1|0.19|ENSG00000133863|chr8:30845507-30845507|T/-|frameshift_variant;TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant;TEX15|p.R1708Kfs*6|1|0.41|ENSG00000133863|chr8:30843895-30843896|-/T|frameshift_variant;TEX15|p.K1907Nfs*14|1|0.11|ENSG00000133863|chr8:30843297-30843297|T/-|frameshift_variant;TEX15|p.K898Nfs*15|1|0.27|ENSG00000133863|chr8:30846324-30846324|T/-|frameshift_variant;TEX15|p.K1005Rfs*15|1|0.05|ENSG00000133863|chr8:30846005-30846006|-/CG|frameshift_variant;TEX15|p.A1007Lfs*12|3|0.21|ENSG00000133863|chr8:30846000-30846000|T/-|frameshift_variant nc|ENSG00000133863|Q9BXT5|TEX15;TEX15|p.A1007Lfs*12|3|0.21|ENSG00000133863|chr8:30846000-30846000|T/-|frameshift_variant nc|ENSG00000133863|Q9BXT5|TEX15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 602.76308 1203.51161 1.0012 0.00060348 -2.449 -0.0014762 -1.4478 -0.0008727 602.7616125420936 115.21 0.5162 110.74 110.43 110.94 -4.4726 0.093862 -0.0017973 NaN 18.373 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1223100 36823 3819;25835 24784 24800 -0.08200822137428077 QTENSLHMGY 10 Unmodified _QTENSLHMGY_ 0 0 0 ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-3|KRIT1 ENST00000486261.5_1_7:91830052-91864980:-|nuORF ENST00000486261.5_1_7:91830052-91864980:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2586059570312 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 64.996 1 61.949 61.449 62.449 -3.047 0 0 0 0.22559 1 12574 12574 17.113 10.011 1 36824 960 24785 24801 36231 36231 -0.07948887027441742 QTESQQIRY 9 Unmodified _QTESQQIRY_ 0 0 0 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3386840820312 2 576.785827 1151.5571 0.32924 0.0001899 -0.20593 -0.00011878 0.12332 7.1127E-05 576.7857029906324 35.94 1.1981 35.94 35.653 36.851 0 99 33 4 0 0 0 1.2771000000000001E-33 1 6650 6650 198.25 133.02 1 112110000 36825 263 24786 24802 36232 36232 -0.012615518843858808 QTESQQIRY 9 Unmodified _QTESQQIRY_ 0 0 0 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3392944335938 2 576.785827 1151.5571 -0.29261 -0.00016878 0.26725 0.00015414 -0.025366 -1.4631E-05 576.7859893979517 38.561 1.1592 36.012 35.63 36.789 -2.5491 121 32 5 0 0 0 1.9539E-73 1 7173 7173 232.37 166.9 1 113830000 36826 263 24786 24802 36233 36233 -0.012615518843858808 QTESQQIRY 9 Unmodified _QTESQQIRY_ 0 0 0 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33935546875 2 576.785827 1151.5571 0.17149 9.8913E-05 -0.26377 -0.00015214 -0.09228 -5.3226E-05 576.7856812420715 38.515 1.0176 36.074 35.668 36.685 -2.4419 109 28 5 0 0 0 1.2771000000000001E-33 1 6896 6896 198.25 125.28 1 107190000 36827 263 24786 24802 36234 36234 -0.012615518843858808 QTESQQIRY 9 Unmodified _QTESQQIRY_ 0 0 0 ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3289184570312 2 576.785827 1151.5571 0.19073 0.00011001 -0.1203 -6.9386E-05 0.070432 4.0624E-05 576.7857779940168 38.424 1.8163 36.019 35.603 37.419 -2.4049 141 51 5 0 0 0 4.7767E-11 3 6929 6929;6935;6979 155.03 78.201 1 86248000 36828 263 24786 24802 36235;36236;36237 36235 -0.012615518843858808 QTETKTITY 9 Unmodified _QTETKTITY_ 0 0 0 ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 ENST00000452150.6_1_6:131179278-131188835:-|nuORF ENST00000452150.6_1_6:131179278-131188835:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7836303710938 2 542.779679 1083.5448 0.00036666 1.9902E-07 0.40624 0.0002205 0.4066 0.0002207 542.7798876086581 40.548 0.6056 37.913 37.543 38.148 -2.6348 30 16 3 0 0 0 0.058839 2 7554 7554;7557 46.34 29.227 1 4723700 36829 1601 24787 24803 36238;36239 36238 0.0063741165256487875 QTETKTITY 9 Unmodified _QTETKTITY_ 0 0 0 ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 ENST00000452150.6_1_6:131179278-131188835:-|nuORF ENST00000452150.6_1_6:131179278-131188835:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.779679 1083.5448 0.42545 0.00023093 -0.39928 -0.00021672 0.026173 1.4206E-05 542.7794676676451 37.948 0.45856 37.948 37.717 38.175 0 0.021406 -0.00049849 NaN 46.34 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3833000 36830 1601 24787 24803 0.0063741165256487875 QTETKTITY 9 Unmodified _QTETKTITY_ 0 0 0 ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 ENST00000452150.6_1_6:131179278-131188835:-|nuORF ENST00000452150.6_1_6:131179278-131188835:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.779679 1083.5448 0.0026976 1.4642E-06 0.28998 0.0001574 0.29268 0.00015886 542.7798645984259 40.485 0.46259 37.945 37.675 38.137 -2.5398 0.017824 0.00024974 NaN 46.34 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4125600 36831 1601 24787 24803 0.0063741165256487875 QTETKTITY 9 Unmodified _QTETKTITY_ 0 0 0 ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 ENST00000452150.6_1_6:131179278-131188835:-|nuORF ENST00000452150.6_1_6:131179278-131188835:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.779679 1083.5448 0.18302 9.9339E-05 0.1303 7.0725E-05 0.31332 0.00017006 542.7796434600557 40.391 0.6033 37.902 37.614 38.217 -2.4896 -0.025512 7.6402E-05 NaN 46.34 30 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3478700 36832 1601 24787 24803 0.0063741165256487875 QTFHTGPK 8 Unmodified _QTFHTGPK_ 0 0 0 REV__ENST00000462156.1_1_2:231249961-231253449:+|nuORF REV__ENST00000462156.1_1_2:231249961-231253449:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2385559082031 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 116.97 1 112.49 111.99 112.99 -4.486 0 0 0 0.21171 1 23059 23059 15.847 2.3393 1 + 36833 18965 24788 24804 36240 36240 0.00036345066178000707 QTFTKKQY 8 Unmodified _QTFTKKQY_ 0 0 0 XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2 XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2625732421875 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 139.01 1 134.16 133.66 134.66 -4.8492 0 0 0 0.21486 1 26796 26796 7.9102 0 1 36834 5399 24789 24805 36241 36241 0.025174564432290936 QTHALMKLK 9 Unmodified _QTHALMKLK_ 0 0 0 ARFGAP3|p.G224Afs*32|1|0.31|ENSG00000242247|chr22:42823659-42823659|T/-|frameshift_variant ARFGAP3|p.G224Afs*32|1|0.31|ENSG00000242247|chr22:42823659-42823659|T/-|frameshift_variant ARFGAP3|p.G224Afs*32|1|0.31|ENSG00000242247|chr22:42823659-42823659|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 535.311279296875 2 535.312969 1068.61138 NaN NaN NaN NaN NaN NaN NaN 167.32 1 162.43 161.93 162.93 -4.8916 0 0 0 0.19665 1 32894 32894 0.12781 0 1 36835 196 24790 24806 36242 36242 0.07982368733473777 QTHLSSLPP 9 Unmodified _QTHLSSLPP_ 0 0 0 REV__ENST00000570164.5_1_16:31500917-31501493:-|nuORF REV__ENST00000570164.5_1_16:31500917-31501493:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2581481933594 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 45.318 1 42.453 41.953 42.953 -2.8653 0 0 0 0.13613 1 8223 8223 32.305 14.171 1 + 36836 23160 24791 24807 36243 36243 0.023328834091330464 QTHRSCICP 9 Unmodified _QTHRSCICP_ 0 0 0 REV__ENST00000392429.1_1_6:130762690-130762768:+|nuORF REV__ENST00000392429.1_1_6:130762690-130762768:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.272216796875 2 522.739311 1043.46407 -0.25109 -0.00013126 -2.8548 -0.0014923 -3.1058 -0.0016235 523.2399254413632 89.155 0.55956 85.111 84.927 85.486 -4.0443 22 15 2 0 0 0 0.56053 1 16991 16991 0.40827 0.15679 1 633310 + 36837 21217 24792 24808 36244 36244 -0.055924711429724994 QTIGTSHTA 9 Unmodified _QTIGTSHTA_ 0 0 0 REV__ENSG00000165376|ENST00000336803|CLDN2 REV__ENSG00000165376|ENST00000336803|CLDN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2408142089844 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 18.441 1 18.441 17.941 18.941 0 0 0 0 0.079869 1 2968 2968 42.095 14.871 1 + 36838 17763 24793 24809 36245 36245 -0.014885665216752386 QTINIKDKY 9 Unmodified _QTINIKDKY_ 0 0 0 REV__ENSG00000091972|ENST00000315711|CD200 REV__ENSG00000091972|ENST00000315711|CD200 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21063232421875 3 374.876634 1121.60807 -0.36307 -0.00013611 0.0037272 1.3973E-06 -0.35934 -0.00013471 374.87666497324506 18.602 0.17798 17.277 17.187 17.365 -1.3251 7 4 2 0 0 0 0.71028 1 2803 2803 5.7834 0.38072 1 374800 + 36839 14578 24794 24810 36246 36246 0.05213397160491695 QTKRSRGF 8 Unmodified _QTKRSRGF_ 0 0 0 HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;HNRNPA3|p.K200Rfs*147|1|0.13|ENSG00000170144|chr2:177216544-177216544|A/-|frameshift_variant;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3 HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant HNRNPA3|p.Y267Lfs*2|1|0.62|ENSG00000170144|chr2:177216918-177216919|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2751159667969 2 490.275232 978.535912 NaN NaN NaN NaN NaN NaN NaN 42.316 1 42.316 41.816 42.816 0 0 0 0 0.21486 1 7913 7913 10.824 2.2306 1 36840 6040 24795 24811 36247 36247 0.045785275974253636 QTLLIHGDGQ 10 Unmodified _QTLLIHGDGQ_ 0 0 0 KCTD19|p.V768Wfs*38|2|0.36|ENSG00000168676|chr16:67291755-67291755|G/-|frameshift_variant;KCTD19|p.V768Rfs*12|1|0.33|ENSG00000168676|chr16:67291754-67291755|-/G|frameshift_variant;ENSG00000168676|ENST00000304372|KCTD19 KCTD19|p.V768Wfs*38|2|0.36|ENSG00000168676|chr16:67291755-67291755|G/-|frameshift_variant KCTD19|p.V768Wfs*38|2|0.36|ENSG00000168676|chr16:67291755-67291755|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2767944335938 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 156.02 1 156.02 155.52 156.52 0 0 0 0 2.8426 1 31290 31290 0.26539 0 1 36841 11986 24796 24812 36248 36248 0.019316534665676954 QTLQRNDIAMA 11 Unmodified _QTLQRNDIAMA_ 0 0 0 NFYC|p.R94Q|1|0.28|ENSG00000066136|chr1:40749676-40749676|G/A|missense_variant NFYC|p.R94Q|1|0.28|ENSG00000066136|chr1:40749676-40749676|G/A|missense_variant NFYC|p.R94Q|1|0.28|ENSG00000066136|chr1:40749676-40749676|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7708740234375 2 630.821886 1259.62922 NaN NaN NaN NaN NaN NaN NaN 87.283 1 83.554 83.054 84.054 -3.7289 0 0 0 0.23018 1 16696 16696 8.1555 1.9497 1 36842 12686 24797 24813 36249 36249 0.009790391976821411 QTMNSTELA 9 Unmodified _QTMNSTELA_ 0 0 0 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.1548767089844 3 332.15518 993.44371 NaN NaN NaN NaN NaN NaN NaN 169.8 1 164.87 164.37 165.37 -4.9295 0 0 0 0.23508 1 33543 33543 4.5289 1.7937 1 36843 2804 24798 24814 36250 36250 -0.053273633217941097 QTMSKRNCLY 10 Oxidation (M) _QTM(Oxidation (M))SKRNCLY_ QTM(1)SKRNCLY QTM(69)SKRNCLY 0 0 1 REV__ENST00000595666.1_1_19:44301745-44302778:-|nuORF REV__ENST00000595666.1_1_19:44301745-44302778:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7508544921875 2 630.29719 1258.57983 0.89664 0.00056515 1.6014 0.0010094 2.4981 0.0015745 630.2982795650015 86.056 0.46778 82.329 82.047 82.514 -3.727 20 12 2 0 0 0 0.077488 1 16819 16819 69.105 30.929 1 2226100 + 36844 17383 24799 24815 36251 36251 123 -0.03911992082771576 QTMSKRNCLY 10 Oxidation (M) _QTM(Oxidation (M))SKRNCLY_ QTM(1)SKRNCLY QTM(79)SKRNCLY 0 0 1 REV__ENST00000595666.1_1_19:44301745-44302778:-|nuORF REV__ENST00000595666.1_1_19:44301745-44302778:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7626953125 2 630.29719 1258.57983 0.29971 0.00018891 2.5255 0.0015918 2.8252 0.0017807 630.8005749831348 85.951 0.52808 82.222 81.92 82.448 -3.7289 23 14 2 0 0 0 0.23651 1 16416 16416 78.728 40.754 1 2295600 + 36845 17383 24799 24815 36252 36252 123 -0.03911992082771576 QTMSKRNCLY 10 Oxidation (M) _QTM(Oxidation (M))SKRNCLY_ 0 0 1 REV__ENST00000595666.1_1_19:44301745-44302778:-|nuORF REV__ENST00000595666.1_1_19:44301745-44302778:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 630.29719 1258.57983 0.48932 0.00030842 2.2101 0.001393 2.6994 0.0017014 630.2985829079423 86.158 0.45993 82.208 81.976 82.436 -3.9503 0.0052425 0.00019418 NaN 69.105 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1928600 + 36846 17383 24799 24815 123 -0.03911992082771576 QTPKTPTT 8 Unmodified _QTPKTPTT_ 0 0 0 ENSG00000166225|ENST00000549921|FRS2 ENSG00000166225|ENST00000549921|FRS2 ENSG00000166225|ENST00000549921|FRS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2275390625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 60.972 1 60.972 60.472 61.472 0 0 0 0 0.23487 1 11697 11697 0.62683 0 1 36847 5704 24800 24816 36253 36253 0.01901505626449307 QTPKTPTT 8 Unmodified _QTPKTPTT_ 0 0 0 ENSG00000166225|ENST00000549921|FRS2 ENSG00000166225|ENST00000549921|FRS2 ENSG00000166225|ENST00000549921|FRS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2361755371094 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 130.3 1 125.47 124.97 125.97 -4.8355 0 0 0 0.21486 1 25017 25017 5.2307 0.47466 1 36848 5704 24800 24816 36254 36254 0.01901505626449307 QTQPSSLL 8 Unmodified _QTQPSSLL_ 0 0 0 REV__nc|ENSG00000145990|Q9NXC2-3|GFOD1 REV__nc|ENSG00000145990|Q9NXC2-3|GFOD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23590087890625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 140.95 1 135.96 135.46 136.46 -4.9877 0 0 0 0.21486 1 27135 27135 11.64 2.2929 1 + 36849 24085 24801 24817 36255 36255 0.019015056264720442 QTQVLRQQQDE 11 Unmodified _QTQVLRQQQDE_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2340087890625 3 458.232028 1371.67426 NaN NaN NaN NaN NaN NaN NaN 26.686 1 26.686 26.186 27.186 0 0 0 0 0.22269 1 4682 4682 0.58532 0.28672 1 36850 2726 24802 24818 36256 36256 0.003285612645868241 QTREGKGW 8 Unmodified _QTREGKGW_ 0 0 0 REV__ENST00000332303.5_2_15:29560805-29560991:-|nuORF REV__ENST00000332303.5_2_15:29560805-29560991:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2455139160156 2 481.246141 960.477728 -0.45534 -0.00021913 -0.23596 -0.00011355 -0.6913 -0.00033269 481.24626258787356 15.828 0.42585 14.612 14.445 14.871 -1.2159 13 11 2 0 0 0 8448 1 2445 2445 0.12286 0 1 327860 + 36851 20625 24803 24819 36257 36257 -0.0040915404786119325 QTSACGQLE 9 Unmodified _QTSACGQLE_ 0 0 0 REV__nc|ENSG00000109881|Q96HJ3-2|CCDC34 REV__nc|ENSG00000109881|Q96HJ3-2|CCDC34 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 936.4763793945312 1 936.409122 935.401846 1.2991 0.0012165 -0.70503 -0.00066019 0.59411 0.00055633 936.408364437106 25.837 0.5827 24.189 24 24.583 -1.6482 29 16 2 0 0 0 0.82765 1 4512 4512 13.906 0.86358 1 2678500 + 36852 13296 24804 24820 36258 36258 -0.06843919010304944 QTSACGQLE 9 Unmodified _QTSACGQLE_ 0 0 0 REV__nc|ENSG00000109881|Q96HJ3-2|CCDC34 REV__nc|ENSG00000109881|Q96HJ3-2|CCDC34 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 936.409122 935.401846 0.57197 0.00053559 -0.094464 -8.8457E-05 0.4775 0.00044714 936.4089865490719 24.482 0.68156 24.482 24.132 24.813 0 0.14623 0.00028532 NaN 13.906 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2949900 + 36853 13296 24804 24820 -0.06843919010304944 QTSTSFEPHFK 11 Unmodified _QTSTSFEPHFK_ 0 0 0 FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant;FAM200B|p.N290Tfs*13|1|0.43|ENSG00000237765|chr4:15687842-15687842|A/-|frameshift_variant;FAM200B|p.K312Nfs*3|1|0.33|ENSG00000237765|chr4:15687908-15687908|A/-|frameshift_variant;ENSG00000237765|ENST00000422728|FAM200B FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2298583984375 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 56.019 1 52.829 52.329 53.329 -3.1895 0 0 0 0.22632 1 10372 10372 1.4074 0 1 36854 11796 24805 24821 36259 36259 -0.026887096788414055 QTTIENPL 8 Unmodified _QTTIENPL_ 0 0 0 nc|ENSG00000139915|Q7Z553|MDGA2;MDGA2|p.I945Lfs*8|1|0.13|ENSG00000139915|chr14:46841973-46841973|A/-|frameshift_variant;ENSG00000139915|ENST00000399232|MDGA2;nc|ENSG00000139915|Q7Z553-2|MDGA2 nc|ENSG00000139915|Q7Z553|MDGA2 nc|ENSG00000139915|Q7Z553|MDGA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2413330078125 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 116.67 1 112.08 111.58 112.58 -4.5815 0 0 0 0.17841 1 22385 22385 32.305 1.6689 1 36855 4270 24806 24822 36260 36260 0.010254882808908405 QTTRAEPGP 9 Unmodified _QTTRAEPGP_ 0 0 0 nc|ENSG00000205022|A6NDY0-3|PABPN1L nc|ENSG00000205022|A6NDY0-3|PABPN1L nc|ENSG00000205022|A6NDY0-3|PABPN1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7435607910156 2 478.743431 955.472308 -0.23031 -0.00011026 0.0089103 4.2658E-06 -0.2214 -0.00010599 478.74353695854876 24.789 0.57674 22.936 22.539 23.116 -1.8534 24 16 2 0 0 0 0.58804 1 3983 3983 13.906 0.86358 1 400250 36856 12563 24807 24823 36261 36261 -0.007208776303286868 QTVPTRWS 8 Unmodified _QTVPTRWS_ 0 0 0 REV__NOTCH3|p.P42Lfs*194|1|0.45|ENSG00000074181|chr19:15197572-15197572|G/-|frameshift_variant REV__NOTCH3|p.P42Lfs*194|1|0.45|ENSG00000074181|chr19:15197572-15197572|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 489.2288513183594 2 487.756341 973.498129 -0.093859 -4.578E-05 -1.1866 -0.00057875 -1.2804 -0.00062453 487.7556580573891 128.4 1.618 123.66 122.99 124.61 -4.7408 126 45 5 0 0 0 8448 1 24668 24668 26.884 22.407 1 71583000 + 36857 24377 24808 24824 36262 36262 0.010320166119413443 QTVYQQVLS 9 Unmodified _QTVYQQVLS_ 0 0 0 nc|ENSG00000070610|Q9HCG7-2|GBA2;ENSG00000070610|ENST00000378103|GBA2;ENST00000485259.1_1_9:35741569-35741881:-|nuORF nc|ENSG00000070610|Q9HCG7-2|GBA2 nc|ENSG00000070610|Q9HCG7-2|GBA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2850952148438 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 36.493 1 34.145 33.645 34.645 -2.3479 0 0 0 0.23277 1 6453 6453 13.906 1.3745 1 36858 1435 24809 24825 36263 36263 0.020531352350417365 QVAALLLLLLL 11 Unmodified _QVAALLLLLLL_ 0 0 0 WFIKKN2|p.S143Pfs*32|1|0.54|ENSG00000173714|chr17:50839711-50839712|-/CC|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2 WFIKKN2|p.S143Pfs*32|1|0.54|ENSG00000173714|chr17:50839711-50839712|-/CC|frameshift_variant WFIKKN2|p.S143Pfs*32|1|0.54|ENSG00000173714|chr17:50839711-50839712|-/CC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2593994140625 2 590.407392 1178.80023 NaN NaN NaN NaN NaN NaN NaN 172.33 1 167.43 166.93 167.93 -4.8977 0 0 0 0.23698 1 34177 34177 1.1933 0.735 1 36859 6307 24810 24826 36264 36264 0.2179834457861034 QVADDSCPRS 10 Unmodified _QVADDSCPRS_ 0 0 0 REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20147705078125 3 359.825834 1076.45567 0.16157 5.8138E-05 1.1651 0.00041923 1.3267 0.00047737 359.8271399158536 80.154 0.72834 80.154 79.828 80.556 0 44 20 3 0 0 0 0.89335 1 15578 15578 3.3196 0 1 3359200 + 36860 16827 24811 24827 36265 36265 -0.0794974657860621 QVAGKCPV 8 Unmodified _QVAGKCPV_ 0 0 0 REV__ENST00000314742.12_2_15:101120688-101120928:-|nuORF REV__ENST00000314742.12_2_15:101120688-101120928:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 401.5203857421875 2 401.218006 800.421459 NaN NaN NaN NaN NaN NaN NaN 107.77 1 107.77 107.27 108.27 0 0 0 0 0.23366 1 21192 21192 0.12286 0.058877 1 + 36861 20512 24812 24828 36266 36266 0.013265017911066934 QVAKHMRKM 9 Unmodified _QVAKHMRKM_ 0 0 0 REV__ENSG00000096401|ENST00000371477|CDC5L REV__ENSG00000096401|ENST00000371477|CDC5L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 564.8670043945312 2 564.81007 1127.60559 NaN NaN NaN NaN NaN NaN NaN 163.07 1 157.93 157.43 158.43 -5.1438 0 0 0 0.23508 1 31713 31713 7.2892 0 1 + 36862 14622 24813 24829 36267 36267 0.04688946950182071 QVAPEEGQV 9 Unmodified _QVAPEEGQV_ 0 0 0 ZNF497|p.A40Pfs*148|1|0.47|ENSG00000174586|chr19:58357518-58357518|C/-|frameshift_variant;ZNF497|p.G308Afs*63|1|0.18|ENSG00000174586|chr19:58356701-58356713|CGGAAAGCCTTTC/-|frameshift_variant;ENSG00000174586|ENST00000311044|ZNF497 ZNF497|p.A40Pfs*148|1|0.47|ENSG00000174586|chr19:58357518-58357518|C/-|frameshift_variant ZNF497|p.A40Pfs*148|1|0.47|ENSG00000174586|chr19:58357518-58357518|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72918701171875 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 131.73 1 131.73 131.23 132.23 0 0 0 0 0.21065 1 26037 26037 20.454 6.5476 1 36863 6359 24814 24830 36268 36268 -0.018436997244634767 QVARRLQRRRQ 11 Unmodified _QVARRLQRRRQ_ 0 0 0 REV__ARID3C|p.V16Wfs*119|1|0.46|ENSG00000205143|chr9:34627969-34627969|C/-|frameshift_variant REV__ARID3C|p.V16Wfs*119|1|0.46|ENSG00000205143|chr9:34627969-34627969|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 733.9471435546875 2 733.947998 1465.88144 NaN NaN NaN NaN NaN NaN NaN 168.51 1 163.58 163.08 164.08 -4.9295 0 0 0 0.23698 1 33224 33224 2.7352 0.45242 1 + 36864 13117 24815 24831 36269 36269 0.16713858113894275 QVARTWKAK 9 Unmodified _QVARTWKAK_ 0 0 0 REV__GZMB|p.R120W|1|0.35|ENSG00000100453|chr14:24632100-24632100|G/A|missense_variant REV__GZMB|p.R120W|1|0.35|ENSG00000100453|chr14:24632100-24632100|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.76953125 2 544.322183 1086.62981 0.11984 6.5232E-05 1.0154 0.00055272 1.1353 0.00061795 544.8235330954074 144.27 0.16884 139.2 139.08 139.25 -5.0671 6 4 2 0 0 0 0.7906 1 27796 27796 8.7454 0 1 3044500 + 36865 23599 24816 24832 36270 36270 0.08996246699689436 QVCCLDIY 8 Unmodified _QVCCLDIY_ 0 0 0 REV__ENST00000539115.5_1_X:24229529-24229658:+|nuORF REV__ENST00000539115.5_1_X:24229529-24229658:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72540283203125 2 478.714439 955.414325 NaN NaN NaN NaN NaN NaN NaN 63.724 1 63.724 63.224 64.224 0 0 0 0 0.2074 1 12257 12257 19.439 0 1 + 36866 22846 24817 24833 36271 36271 -0.06516598871621682 QVCEVQEA 8 Carbamidomethyl (C) _QVC(Carbamidomethyl (C))EVQEA_ QVC(1)EVQEA QVC(85)EVQEA 0 1 0 ALDH1A2|p.D73H|1|0.15|ENSG00000128918|chr15:58014182-58014182|C/G|missense_variant;ENST00000559266.5_1_15:58285255-58306437:-|nuORF;ENST00000558595.5_1_15:58304322-58357848:-|nuORF;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2 ALDH1A2|p.D73H|1|0.15|ENSG00000128918|chr15:58014182-58014182|C/G|missense_variant ALDH1A2|p.D73H|1|0.15|ENSG00000128918|chr15:58014182-58014182|C/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2460632324219 2 481.716024 961.417496 0.012455 6E-06 -0.20736 -9.9886E-05 -0.1949 -9.3886E-05 481.71598779327303 33.22 0.91013 33.22 32.85 33.76 0 61 25 3 0 0 0 0.12337 1 6088 6088 85.272 23.67 1 11195000 36867 119 24818 24834 36272 36272 0 -0.0647563249325458 QVCEVQEA 8 Carbamidomethyl (C) _QVC(Carbamidomethyl (C))EVQEA_ QVC(1)EVQEA QVC(96)EVQEA 0 1 0 ALDH1A2|p.D73H|1|0.15|ENSG00000128918|chr15:58014182-58014182|C/G|missense_variant;ENST00000559266.5_1_15:58285255-58306437:-|nuORF;ENST00000558595.5_1_15:58304322-58357848:-|nuORF;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2 ALDH1A2|p.D73H|1|0.15|ENSG00000128918|chr15:58014182-58014182|C/G|missense_variant ALDH1A2|p.D73H|1|0.15|ENSG00000128918|chr15:58014182-58014182|C/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2373962402344 2 481.716024 961.417496 -0.27818 -0.000134 0.26649 0.00012837 -0.011692 -5.6321E-06 481.71616015033476 35.541 0.92535 33.148 32.74 33.665 -2.3938 62 25 3 0 0 0 0.053099 1 6518 6518 96.285 12.856 1 16244000 36868 119 24818 24834 36273 36273 0 -0.0647563249325458 QVCEVQEA 8 Carbamidomethyl (C) _QVC(Carbamidomethyl (C))EVQEA_ QVC(1)EVQEA QVC(100)EVQEA 0 1 0 ALDH1A2|p.D73H|1|0.15|ENSG00000128918|chr15:58014182-58014182|C/G|missense_variant;ENST00000559266.5_1_15:58285255-58306437:-|nuORF;ENST00000558595.5_1_15:58304322-58357848:-|nuORF;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2 ALDH1A2|p.D73H|1|0.15|ENSG00000128918|chr15:58014182-58014182|C/G|missense_variant ALDH1A2|p.D73H|1|0.15|ENSG00000128918|chr15:58014182-58014182|C/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7886962890625 2 481.716024 961.417496 0.18805 9.0588E-05 -0.11012 -5.3049E-05 0.07793 3.754E-05 481.7159773911553 35.482 1.0067 33.23 32.881 33.888 -2.2527 69 28 3 0 0 0 6.1274E-05 1 6232 6232 103.75 59.89 1 15491000 36869 119 24818 24834 36274 36274 0 -0.0647563249325458 QVCEVQEA 8 Carbamidomethyl (C) _QVC(Carbamidomethyl (C))EVQEA_ QVC(1)EVQEA QVC(120)EVQEA 0 1 0 ALDH1A2|p.D73H|1|0.15|ENSG00000128918|chr15:58014182-58014182|C/G|missense_variant;ENST00000559266.5_1_15:58285255-58306437:-|nuORF;ENST00000558595.5_1_15:58304322-58357848:-|nuORF;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2 ALDH1A2|p.D73H|1|0.15|ENSG00000128918|chr15:58014182-58014182|C/G|missense_variant ALDH1A2|p.D73H|1|0.15|ENSG00000128918|chr15:58014182-58014182|C/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.236328125 2 481.716024 961.417496 0.2355 0.00011344 -0.28085 -0.00013529 -0.045354 -2.1848E-05 481.7159053586382 35.556 0.94224 33.279 32.828 33.77 -2.2766 65 26 3 0 0 0 0.002247 1 6242 6242 120.45 20.695 1 10329000 36870 119 24818 24834 36275 36275 0 -0.0647563249325458 QVCFDDCS 8 Unmodified _QVCFDDCS_ 0 0 0 DHX40|p.R135C|2|0.17|ENSG00000108406|chr17:59570640-59570640|C/T|missense_variant DHX40|p.R135C|2|0.17|ENSG00000108406|chr17:59570640-59570640|C/T|missense_variant DHX40|p.R135C|2|0.17|ENSG00000108406|chr17:59570640-59570640|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2376708984375 2 458.662403 915.310253 NaN NaN NaN NaN NaN NaN NaN 163.59 1 158.54 158.04 159.04 -5.0446 0 0 0 0.21486 1 31842 31842 5.2307 0 1 36871 831 24819 24835 36276 36276 -0.150789256991402 QVCHEDQA 8 Unmodified _QVCHEDQA_ 0 0 0 ENST00000490198.5_1_14:105930451-105931126:+|nuORF ENST00000490198.5_1_14:105930451-105931126:+|nuORF ENST00000490198.5_1_14:105930451-105931126:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24786376953125 2 465.192716 928.37088 0.25882 0.0001204 0.32676 0.00015201 0.58558 0.00027241 465.19467416916257 27.981 0.73647 25.985 25.644 26.381 -1.9962 71 20 5 0 0 0 8448 1 4688 4688 6.2058 1.3088 1 2413600 36872 10510 24820 24836 36277 36277 -0.09617072324556375 QVCKHVHPV 9 Unmodified _QVCKHVHPV_ 0 0 0 ENST00000434735.6_1_12:109919507-109921397:+|nuORF;ENST00000539599.5_1_12:109915487-109921397:+|nuORF ENST00000434735.6_1_12:109919507-109921397:+|nuORF ENST00000434735.6_1_12:109919507-109921397:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6981201171875 2 523.781836 1045.54912 -0.14847 -7.7764E-05 -0.92092 -0.00048236 -1.0694 -0.00056013 523.7811619452463 99.466 0.44907 95.334 94.992 95.441 -4.1326 21 12 2 0 0 0 0.77732 1 19476 19476 12.532 6.7997 1 2098000 36873 9820 24821 24837 36278 36278 0.02816642385164414 QVCRRHELY 9 Unmodified _QVCRRHELY_ 0 0 0 nc|ENSG00000116985|P34820-2|BMP8B;ENSG00000183682|ENST00000331593|BMP8A;ENSG00000116985|ENST00000372827|BMP8B nc|ENSG00000116985|P34820-2|BMP8B nc|ENSG00000116985|P34820-2|BMP8B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.274169921875 2 602.306207 1202.59786 NaN NaN NaN NaN NaN NaN NaN 141.27 1 136.62 136.12 137.12 -4.6493 0 0 0 0.23508 1 27900 27900 10.824 2.6684 1 36874 2965 24822 24838 36279 36279 0.0046651095426568645 QVCVHRPLN 9 Unmodified _QVCVHRPLN_ 0 0 0 REV__ENST00000342287.9_2_9:128728684-128729074:+|nuORF REV__ENST00000342287.9_2_9:128728684-128729074:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.283447265625 2 533.284743 1064.55493 NaN NaN NaN NaN NaN NaN NaN 166.82 1 166.82 166.32 167.32 0 0 0 0 0.23508 1 34029 34029 9.3831 1.473 1 + 36875 20721 24823 24839 36280 36280 0.025237408968223463 QVDAQLLTV 9 Unmodified _QVDAQLLTV_ 0 0 0 nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40 nc|ENSG00000103549|O75150-4|RNF40 nc|ENSG00000103549|O75150-4|RNF40 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 493.27227783203125 2 493.779482 985.544411 0.055433 2.7371E-05 0.20619 0.00010181 0.26162 0.00012918 493.77945534892433 131.96 0.62955 127.32 126.89 127.52 -4.6399 28 17 2 0 0 0 0.38759 1 25984 25984 42.232 21.184 1 1607800 36876 2198 24824 24840 36281 36281 0.051060367233731085 QVDAQLLTV 9 Unmodified _QVDAQLLTV_ 0 0 0 nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40 nc|ENSG00000103549|O75150-4|RNF40 nc|ENSG00000103549|O75150-4|RNF40 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 493.779482 985.544411 0.041903 2.0691E-05 0.0075509 3.7285E-06 0.049454 2.442E-05 493.77936415123287 132.19 0.55794 127.34 127.01 127.57 -4.8527 0.008578 -9.3738E-05 NaN 42.232 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1746600 36877 2198 24824 24840 0.051060367233731085 QVDDLNIV 8 Unmodified _QVDDLNIV_ 0 0 0 REV__AP2A2|p.R471L|1|0.31|ENSG00000183020|chr11:992645-992645|G/T|missense_variant REV__AP2A2|p.R471L|1|0.31|ENSG00000183020|chr11:992645-992645|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2287292480469 2 458.242732 914.470912 0.3016 0.00013821 -0.31399 -0.00014388 -0.012391 -5.6781E-06 458.2425176589719 90.472 0.70355 86.428 86.021 86.725 -4.0443 30 19 2 0 0 0 0.8956 1 17162 17162 0.25148 0 1 876310 + 36878 13072 24825 24841 36282 36282 0.010254882809022092 QVDFSPDMSY 10 Oxidation (M) _QVDFSPDM(Oxidation (M))SY_ QVDFSPDM(1)SY QVDFSPDM(96)SY 0 0 1 ENST00000606893.5_1_6:110533295-110551331:+|nuORF;ENSG00000168438|ENST00000307731|CDC40 ENST00000606893.5_1_6:110533295-110551331:+|nuORF ENST00000606893.5_1_6:110533295-110551331:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.279296875 2 602.744979 1203.4754 0.2362 0.00014237 -0.0038776 -2.3372E-06 0.23232 0.00014003 602.7449515500563 90.288 0.56038 90.288 89.983 90.543 0 28 15 3 0 0 0 0.017399 1 17665 17665 96.111 74.364 1 2803100 36879 5908 24826 24842 36283 36283 90 -0.11819415358490915 QVDFSPDMSY 10 Oxidation (M) _QVDFSPDM(Oxidation (M))SY_ QVDFSPDM(1)SY QVDFSPDM(46)SY 0 0 1 ENST00000606893.5_1_6:110533295-110551331:+|nuORF;ENSG00000168438|ENST00000307731|CDC40 ENST00000606893.5_1_6:110533295-110551331:+|nuORF ENST00000606893.5_1_6:110533295-110551331:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.287841796875 2 602.744979 1203.4754 0.20304 0.00012238 0.047784 2.8801E-05 0.25082 0.00015118 602.7450832043047 91.578 0.69514 91.578 91.181 91.876 0 29 19 2 0 0 0 0.29449 1 17846 17846 45.7 34.059 1 4076800 36880 5908 24826 24842 36284 36284 90 -0.11819415358490915 QVDFSPDMSY 10 Oxidation (M) _QVDFSPDM(Oxidation (M))SY_ QVDFSPDM(1)SY QVDFSPDM(180)SY 0 0 1 ENST00000606893.5_1_6:110533295-110551331:+|nuORF;ENSG00000168438|ENST00000307731|CDC40 ENST00000606893.5_1_6:110533295-110551331:+|nuORF ENST00000606893.5_1_6:110533295-110551331:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2974243164062 2 602.744979 1203.4754 1.0338 0.0006231 -0.65026 -0.00039194 0.38351 0.00023116 602.7446432392182 94.736 0.67252 90.687 90.428 91.101 -4.0496 36 18 3 0 0 0 2.8676E-24 1 18600 18600 179.17 139.22 1 4288100 36881 5908 24826 24842 36285 36285 90 -0.11819415358490915 QVDFSPDMSY 10 Oxidation (M) _QVDFSPDM(Oxidation (M))SY_ QVDFSPDM(1)SY QVDFSPDM(58)SY 0 0 1 ENST00000606893.5_1_6:110533295-110551331:+|nuORF;ENSG00000168438|ENST00000307731|CDC40 ENST00000606893.5_1_6:110533295-110551331:+|nuORF ENST00000606893.5_1_6:110533295-110551331:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3013305664062 2 602.744979 1203.4754 1.0505 0.00063316 -0.57795 -0.00034836 0.47251 0.0002848 602.7445406470937 96.074 0.75517 92.024 91.678 92.433 -4.0496 45 21 3 0 0 0 0.10731 1 18794 18794 57.722 42.884 1 4539500 36882 5908 24826 24842 36286 36286 90 -0.11819415358490915 QVDFSPDMSY 10 Oxidation (M) _QVDFSPDM(Oxidation (M))SY_ QVDFSPDM(1)SY QVDFSPDM(96)SY 0 0 1 ENST00000606893.5_1_6:110533295-110551331:+|nuORF;ENSG00000168438|ENST00000307731|CDC40 ENST00000606893.5_1_6:110533295-110551331:+|nuORF ENST00000606893.5_1_6:110533295-110551331:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2933349609375 2 602.744979 1203.4754 0.061643 3.7155E-05 0.19595 0.00011811 0.25759 0.00015526 602.7451779548704 95.787 0.71358 91.906 91.649 92.362 -3.881 37 20 2 0 0 0 0.053382 1 18452 18452 96.111 76.854 1 4518100 36883 5908 24826 24842 36287 36287 90 -0.11819415358490915 QVDFSPDMSY 10 Oxidation (M) _QVDFSPDM(Oxidation (M))SY_ 0 0 1 ENST00000606893.5_1_6:110533295-110551331:+|nuORF;ENSG00000168438|ENST00000307731|CDC40 ENST00000606893.5_1_6:110533295-110551331:+|nuORF ENST00000606893.5_1_6:110533295-110551331:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 602.744979 1203.4754 0.51509 0.00031047 -0.27786 -0.00016748 0.23723 0.00014299 602.7448167699412 94.753 0.63203 90.561 90.369 91.001 -4.1911 0.012719 -3.8809E-05 NaN 179.17 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2971100 36884 5908 24826 24842 90 -0.11819415358490915 QVDLKKSRL 9 Unmodified _QVDLKKSRL_ 0 0 0 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7963256835938 2 543.835123 1085.65569 NaN NaN NaN NaN NaN NaN NaN 148.17 1 143.01 142.51 143.51 -5.1557 0 0 0 0.23508 1 28681 28681 9.3831 0.63772 1 36885 1955 24827 24843 36288 36288 0.11629096151318663 QVDNSLITKY 10 Unmodified _QVDNSLITKY_ 0 0 0 nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-3|PRR14L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2627563476562 2 590.814053 1179.61355 0.52691 0.0003113 -0.16114 -9.5201E-05 0.36577 0.0002161 590.8138506752222 83.245 0.70644 83.245 82.909 83.615 0 55 19 4 0 0 0 3.6787E-12 1 16241 16241 169.92 116.52 1 15876000 36886 6853 24828 24844 36289 36289 0.03093075952278923 QVDNSLITKY 10 Unmodified _QVDNSLITKY_ 0 0 0 nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-3|PRR14L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2534790039062 2 590.814053 1179.61355 0.42563 0.00025147 -0.26823 -0.00015847 0.1574 9.2996E-05 590.8137906707262 87.002 0.70151 83.275 82.906 83.608 -3.727 61 19 4 0 0 0 2.959E-12 1 16994 16994 161.44 94.988 1 23567000 36887 6853 24828 24844 36290 36290 0.03093075952278923 QVDNSLITKY 10 Unmodified _QVDNSLITKY_ 0 0 0 nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-3|PRR14L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2520141601562 2 590.814053 1179.61355 0.71415 0.00042193 -0.5237 -0.00030941 0.19045 0.00011252 590.8136672457051 87.224 0.73546 83.273 82.858 83.594 -3.9503 58 20 4 0 0 0 0.80382 1 16644 16644 22.775 17.478 1 17436000 36888 6853 24828 24844 36291 36291 0.03093075952278923 QVDNSLITKY 10 Unmodified _QVDNSLITKY_ 0 0 0 nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-3|PRR14L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2660522460938 2 590.814053 1179.61355 0.12973 7.6644E-05 0.095595 5.6479E-05 0.22532 0.00013312 590.8140102502941 86.926 0.66947 83.197 82.872 83.542 -3.7289 53 18 4 0 0 0 7.634E-19 1 16627 16627 158.08 98.708 1 21278000 36889 6853 24828 24844 36292 36292 0.03093075952278923 QVDPNYAYAY 10 Unmodified _QVDPNYAYAY_ 0 0 0 ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2947998046875 2 602.269478 1202.5244 0.33728 0.00020313 0.01885 1.1353E-05 0.35613 0.00021449 602.2694728896969 86.373 0.6962 86.373 86.041 86.737 0 57 19 4 0 0 0 0.0056335 1 16839 16839 56.939 48.043 1 13215000 36890 979 24829 24845 36293 36293 -0.0687575900722095 QVDPNYAYAY 10 Unmodified _QVDPNYAYAY_ 0 0 0 ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2957153320312 2 602.269478 1202.5244 0.96384 0.00058049 -0.59427 -0.00035791 0.36957 0.00022258 602.2690383565285 90.96 0.8201 87.101 86.721 87.541 -3.8595 76 23 4 0 0 0 0.00020413 1 17872 17872 122.18 96.78 1 25150000 36891 979 24829 24845 36294 36294 -0.0687575900722095 QVDPNYAYAY 10 Unmodified _QVDPNYAYAY_ 0 0 0 ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.299560546875 2 602.269478 1202.5244 0.23024 0.00013867 0.29642 0.00017852 0.52666 0.00031719 602.2695792071789 90.78 0.90215 87.002 86.502 87.404 -3.7779 79 25 4 0 0 0 3.5042E-07 2 17393 17393;17451 147.06 110.55 1 20149000 36892 979 24829 24845 36295;36296 36295 -0.0687575900722095 QVDPNYAYAY 10 Unmodified _QVDPNYAYAY_ 0 0 0 ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2881469726562 2 602.269478 1202.5244 NaN NaN NaN NaN NaN NaN NaN 91.183 1 87.374 86.874 87.874 -3.8083 0 0 0 0.22557 1 17453 17453 17.443 8.6972 1 36893 979 24829 24845 36297 36297 -0.0687575900722095 QVDPNYAYAY 10 Unmodified _QVDPNYAYAY_ 0 0 0 ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 602.269478 1202.5244 0.67319 0.00040544 -0.25774 -0.00015523 0.41545 0.00025021 602.2692899073459 91.109 0.82697 87.014 86.6 87.427 -4.0946 -0.024826 -0.00018165 NaN 147.06 78 23 4 NaN NaN NaN NaN 0 NaN NaN 0 20973000 36894 979 24829 24845 -0.0687575900722095 QVDVPLSSSL 10 Unmodified _QVDVPLSSSL_ 0 0 0 REV__tr|U7SIQ6|U7SIQ6_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1 REV__tr|U7SIQ6|U7SIQ6_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6874389648438 2 522.782222 1043.54989 0.20305 0.00010615 0.17591 9.1964E-05 0.37897 0.00019812 522.7821920480276 127.81 0.63093 123.11 122.82 123.45 -4.6998 40 17 3 0 0 0 0.6817 1 24568 24568 13.042 0 1 1998100 + 36895 24891 24830 24846 36298 36298 0.029857155152058112 QVESPNPLY 9 Unmodified _QVESPNPLY_ 0 0 0 REV__ENST00000312756.4_1_3:158369993-158373740:+|nuORF REV__ENST00000312756.4_1_3:158369993-158373740:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.685302734375 2 523.761289 1045.50803 NaN NaN NaN NaN NaN NaN NaN 112.44 1 112.44 111.94 112.94 0 0 0 0 0.23508 1 22119 22119 8.5933 0 1 + 36896 18061 24831 24847 36299 36299 -0.012908401733284336 QVFQEWWRRYM 11 Unmodified _QVFQEWWRRYM_ 0 0 0 REV__ENST00000553865.1_1_14:99968556-99969378:+|nuORF REV__ENST00000553865.1_1_14:99968556-99969378:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7822875976562 3 543.597877 1627.7718 NaN NaN NaN NaN NaN NaN NaN 143.19 1 143.19 142.69 143.69 0 0 0 0 0.22632 1 28568 28568 0.0059557 0 1 + 36897 13309 24832 24848 36300 36300 -0.016973283402876405 QVFVRTDNC 9 Unmodified _QVFVRTDNC_ 0 0 0 REV__ALDH9A1|p.G315D|1|0.32|ENSG00000143149|chr1:165669437-165669437|C/T|missense_variant REV__ALDH9A1|p.G315D|1|0.32|ENSG00000143149|chr1:165669437-165669437|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2593383789062 2 541.258391 1080.50223 NaN NaN NaN NaN NaN NaN NaN 170.56 1 165.77 165.27 166.27 -4.7898 0 0 0 0.23508 1 34623 34623 10.824 0.75 1 + 36898 13009 24833 24849 36301 36301 -0.0348026195665625 QVGFVLAN 8 Unmodified _QVGFVLAN_ 0 0 0 REV__nc|ENSG00000197119|Q8N8R3-3|SLC25A29 REV__nc|ENSG00000197119|Q8N8R3-3|SLC25A29 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 424.2078857421875 2 424.237253 846.459953 NaN NaN NaN NaN NaN NaN NaN 50.101 1 50.101 49.601 50.601 0 0 0 0 0.23025 1 9482 9482 0.25148 0 1 + 36899 19305 24834 24850 36302 36302 0.030581306972862876 QVGVDVPLTGP 11 Unmodified _QVGVDVPLTGP_ 0 0 0 ENST00000469665.1_1_3:49160507-49161165:-|nuORF ENST00000469665.1_1_3:49160507-49161165:-|nuORF ENST00000469665.1_1_3:49160507-49161165:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2774047851562 2 541.298039 1080.58152 NaN NaN NaN NaN NaN NaN NaN 164.71 1 164.71 164.21 165.21 0 0 0 0 0.22501 1 33339 33339 12.241 1.4167 1 36900 10184 24835 24851 36303 36303 0.04445708269122406 QVHFALQS 8 Unmodified _QVHFALQS_ 0 0 0 ENST00000491721.1_1_2:200820134-200820506:+|nuORF ENST00000491721.1_1_2:200820134-200820506:+|nuORF ENST00000491721.1_1_2:200820134-200820506:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2539978027344 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 117.72 1 117.72 117.22 118.22 0 0 0 0 0.23182 1 23188 23188 2.643 1.7679 1 36901 10531 24836 24852 36304 36304 0.009566315832444161 QVHFALQS 8 Unmodified _QVHFALQS_ 0 0 0 ENST00000491721.1_1_2:200820134-200820506:+|nuORF ENST00000491721.1_1_2:200820134-200820506:+|nuORF ENST00000491721.1_1_2:200820134-200820506:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2435302734375 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 117.76 1 117.76 117.26 118.26 0 0 0 0 0.23182 1 23195 23195 4.2837 2.5918 1 36902 10531 24836 24852 36305 36305 0.009566315832444161 QVHFALQS 8 Unmodified _QVHFALQS_ 0 0 0 ENST00000491721.1_1_2:200820134-200820506:+|nuORF ENST00000491721.1_1_2:200820134-200820506:+|nuORF ENST00000491721.1_1_2:200820134-200820506:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2436218261719 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 122.21 1 117.68 117.18 118.18 -4.5305 0 0 0 0.23182 1 23527 23527 2.643 0.95116 1 36903 10531 24836 24852 36306 36306 0.009566315832444161 QVHGGHGRAF 10 Unmodified _QVHGGHGRAF_ 0 0 0 ENST00000563505.5_1_16:730510-732063:+|nuORF ENST00000563505.5_1_16:730510-732063:+|nuORF ENST00000563505.5_1_16:730510-732063:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2711791992188 2 533.270481 1064.52641 NaN NaN NaN NaN NaN NaN NaN 147.05 1 142.05 141.55 142.55 -5 0 0 0 0.22588 1 28461 28461 7.2892 0 1 36904 11332 24837 24853 36307 36307 -0.003272406881023926 QVHQLLQMV 9 Unmodified _QVHQLLQMV_ 0 0 0 nc|ENSG00000082512|O00463-3|TRAF5;ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5 nc|ENSG00000082512|O00463-3|TRAF5 nc|ENSG00000082512|O00463-3|TRAF5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.21160888671875 3 365.870826 1094.59065 -0.52827 -0.00019328 1.1848 0.00043349 0.65654 0.00024021 365.87123309392206 111.59 0.4877 107.16 106.93 107.41 -4.4231 20 13 2 0 0 0 0.54058 1 21997 21997 12.241 4.0851 1 1439800 36905 1640 24838 24854 36308 36308 0.04713778353834641 QVIVHKPLL 9 Unmodified _QVIVHKPLL_ 0 0 0 REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.2307434082031 3 349.56221 1045.6648 -0.40825 -0.00014271 0.39362 0.00013759 -0.014629 -5.1136E-06 349.5622960261137 141.92 1.3048 137.05 136.4 137.7 -4.8677 113 36 4 0 0 0 0.48659 1 27482 27482 2.6312 0 1 48175000 + 36906 21213 24839 24855 36309 36309 0.14379489507655308 QVIVSCCCEP 10 Unmodified _QVIVSCCCEP_ 0 0 0 ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;ZFYVE26|p.D2513Mfs*3|1|0.29|ENSG00000072121|chr14:67748519-67748519|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ZFYVE26|p.P1734Lfs*10|1|0.08|ENSG00000072121|chr14:67775880-67775880|G/-|frameshift_variant;ENST00000554557.5_1_14:68248216-68272009:-|nuORF ENST00000554523.5_1_14:68228796-68282710:-|nuORF ENST00000554523.5_1_14:68228796-68282710:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2836303710938 2 540.729763 1079.44497 0.73551 0.00039771 4.428 0.0023943 5.1635 0.0027921 540.7316979881352 101.59 0.27516 101.59 101.47 101.74 0 12 7 3 0 0 0 0.85223 1 19930 19930 18.146 9.5531 1 1223000 36907 1458 24840 24856 36310 36310 -0.09157188548897466 QVKGHYRQA 9 Unmodified _QVKGHYRQA_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB;CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant ENSG00000125817|ENST00000379751|CENPB;CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant ENSG00000125817|ENST00000379751|CENPB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.794189453125 2 543.793789 1085.57303 NaN NaN NaN NaN NaN NaN NaN 31.642 1 29.411 28.911 29.911 -2.2305 0 0 0 0.22251 1 5748 5748 16.942 2.104 1 36908 3392;481 24841 24857 36311 36311 0.03366199143169979 QVKKALLLQY 10 Unmodified _QVKKALLLQY_ 0 0 0 REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7 REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.275146484375 2 602.376623 1202.73869 0.31615 0.00019044 -2.2408 -0.0013498 -1.9247 -0.0011594 602.8777576281726 137.22 0.1369 132.38 132.28 132.41 -4.84 5 3 2 0 0 0 0.91149 1 26429 26429 3.5965 0.60125 1 908070 + 36909 16480 24842 24858 36312 36312 0.14543412879334028 QVKPKRTDD 9 Unmodified _QVKPKRTDD_ 0 0 0 ENSG00000169857|ENST00000306730|AVEN ENSG00000169857|ENST00000306730|AVEN ENSG00000169857|ENST00000306730|AVEN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.796630859375 2 543.798737 1085.58292 NaN NaN NaN NaN NaN NaN NaN 123.54 1 118.96 118.46 119.46 -4.5757 0 0 0 0.20628 1 24350 24350 21.747 5.8995 1 36910 6012 24843 24859 36313 36313 0.0435534235787145 QVKYFVHYNWW 11 Unmodified _QVKYFVHYNWW_ 0 0 0 ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3861694335938 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 141.36 1 141.36 140.86 141.86 0 0 0 0 0.23698 1 28159 28159 1.3295 0 1 36911 9809 24844 24860 36314 36314 -0.005158718658094585 QVKYFVHYNWW 11 Unmodified _QVKYFVHYNWW_ 0 0 0 ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3858032226562 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 146.45 1 141.76 141.26 142.26 -4.6868 0 0 0 0.22632 1 29047 29047 0.026206 0 1 36912 9809 24844 24860 36315 36315 -0.005158718658094585 QVKYFVHYNWW 11 Unmodified _QVKYFVHYNWW_ 0 0 0 ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3858032226562 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 146.47 1 141.78 141.28 142.28 -4.6868 0 0 0 0.23698 1 29050 29050 1.3295 0 1 36913 9809 24844 24860 36316 36316 -0.005158718658094585 QVKYFVHYNWW 11 Unmodified _QVKYFVHYNWW_ 0 0 0 ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3873901367188 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 146.69 1 142.01 141.51 142.51 -4.6868 0 0 0 0.22632 1 29097 29097 0.026206 0 1 36914 9809 24844 24860 36317 36317 -0.005158718658094585 QVKYFVHYNWW 11 Unmodified _QVKYFVHYNWW_ 0 0 0 ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3856811523438 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 146.78 1 141.67 141.17 142.17 -5.1108 0 0 0 0.22632 1 28392 28392 0.026206 0 1 36915 9809 24844 24860 36318 36318 -0.005158718658094585 QVKYFVHYNWW 11 Unmodified _QVKYFVHYNWW_ 0 0 0 ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3858642578125 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 146.56 1 141.56 141.06 142.06 -5 0 0 0 0.22632 1 28363 28363 0.026206 0 1 36916 9809 24844 24860 36319 36319 -0.005158718658094585 QVKYFVHYNWW 11 Unmodified _QVKYFVHYNWW_ 0 0 0 ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3851318359375 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 146.8 1 141.8 141.3 142.3 -5 0 0 0 0.22632 1 28413 28413 0.026206 0 1 36917 9809 24844 24860 36320 36320 -0.005158718658094585 QVKYFVHYNWW 11 Unmodified _QVKYFVHYNWW_ 0 0 0 ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF ENST00000433352.1_1_X:64550801-64551062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3875732421875 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 163.66 1 158.59 158.09 159.09 -5.0648 0 0 0 0.2367 1 31855 31855 2.9952 1.8019 1 36918 9809 24844 24860 36321 36321 -0.005158718658094585 QVLEEKLKY 9 Unmodified _QVLEEKLKY_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2;ENST00000566635.5_1_15:28356911-28362639:-|nuORF ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3240356445312 2 575.329339 1148.64412 0.29019 0.00016695 1.255 0.00072204 1.5452 0.00088899 575.3299173716695 129.92 1.1406 129.92 129.2 130.34 0 70 32 3 0 0 0 0.60061 1 25729 25729 13.042 2.9685 1 10763000 36919 3540 24845 24861 36322 36322 0.07574854337326542 QVLHPVEPIP 10 Unmodified _QVLHPVEPIP_ 0 0 0 FAM83F|p.P386H|1|0.15|ENSG00000133477|chr22:40021667-40021667|C/A|missense_variant FAM83F|p.P386H|1|0.15|ENSG00000133477|chr22:40021667-40021667|C/A|missense_variant FAM83F|p.P386H|1|0.15|ENSG00000133477|chr22:40021667-40021667|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 564.8241577148438 2 564.824224 1127.63389 NaN NaN NaN NaN NaN NaN NaN 173.12 1 173.12 172.62 173.62 0 0 0 0 2.8426 1 35782 35782 0.84494 0 1 36920 11799 24846 24862 36323 36323 0.07518291402743671 QVLIFACL 8 Unmodified _QVLIFACL_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant;RALGAPA2|p.F549Lfs*4|1|0.36|ENSG00000188559|chr20:20616084-20616084|A/-|frameshift_variant;RALGAPA2|p.Y614Ffs*14|1|0.08|ENSG00000188559|chr20:20605372-20605373|-/GAACAAAAGGAAAAGA|frameshift_variant;RALGAPA2|p.S919Afs*24|1|0.29|ENSG00000188559|chr20:20573022-20573022|C/-|frameshift_variant;RALGAPA2|p.Y1040Tfs*3|1|0.35|ENSG00000188559|chr20:20571496-20571496|A/-|frameshift_variant;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75909423828125 2 453.759507 905.50446 NaN NaN NaN NaN NaN NaN NaN 156.08 1 150.83 150.33 151.33 -5.2526 0 0 0 0.2396 1 30269 30269 0.12286 0 1 36921 7178;12859 24847 24863 36324 36324 0.04792818519092634 QVLKHLDPE 9 Unmodified _QVLKHLDPE_ 0 0 0 FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant;FAM47A|p.R499Sfs*86|1|0.51|ENSG00000185448|chrX:34130747-34130784|GTCTTGGGAGGCTCCGAGCGGAGACTGGACGTCCGACG/-|frameshift_variant;FAM47A|p.K723Sfs*22|1|0.69|ENSG00000185448|chrX:34130111-34130111|T/-|frameshift_variant;ENSG00000185448|ENST00000346193|FAM47A FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013244628906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 70.11 1 70.11 69.61 70.61 0 0 0 0 0.23508 1 13577 13577 2.4985 0 1 36922 6991 24848 24864 36325 36325 0.0461712798901317 QVLKHLDPE 9 Unmodified _QVLKHLDPE_ 0 0 0 FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant;FAM47A|p.R499Sfs*86|1|0.51|ENSG00000185448|chrX:34130747-34130784|GTCTTGGGAGGCTCCGAGCGGAGACTGGACGTCCGACG/-|frameshift_variant;FAM47A|p.K723Sfs*22|1|0.69|ENSG00000185448|chrX:34130111-34130111|T/-|frameshift_variant;ENSG00000185448|ENST00000346193|FAM47A FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 105.79 1 105.79 105.29 106.29 0 0 0 0 0.23508 1 20791 20791 4.897 0 1 36923 6991 24848 24864 36326 36326 0.0461712798901317 QVLKHLDPE 9 Unmodified _QVLKHLDPE_ 0 0 0 FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant;FAM47A|p.R499Sfs*86|1|0.51|ENSG00000185448|chrX:34130747-34130784|GTCTTGGGAGGCTCCGAGCGGAGACTGGACGTCCGACG/-|frameshift_variant;FAM47A|p.K723Sfs*22|1|0.69|ENSG00000185448|chrX:34130111-34130111|T/-|frameshift_variant;ENSG00000185448|ENST00000346193|FAM47A FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2014465332031 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 106.13 1 106.13 105.63 106.63 0 0 0 0 0.23508 1 20860 20860 4.897 0.95262 1 36924 6991 24848 24864 36327 36327 0.0461712798901317 QVLKHLDPE 9 Unmodified _QVLKHLDPE_ 0 0 0 FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant;FAM47A|p.R499Sfs*86|1|0.51|ENSG00000185448|chrX:34130747-34130784|GTCTTGGGAGGCTCCGAGCGGAGACTGGACGTCCGACG/-|frameshift_variant;FAM47A|p.K723Sfs*22|1|0.69|ENSG00000185448|chrX:34130111-34130111|T/-|frameshift_variant;ENSG00000185448|ENST00000346193|FAM47A FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant FAM47A|p.R512Vfs*69|1|0.62|ENSG00000185448|chrX:34130745-34130745|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21514892578125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 106.26 1 106.26 105.76 106.76 0 0 0 0 0.23508 1 20888 20888 2.7352 0 1 36925 6991 24848 24864 36328 36328 0.0461712798901317 QVLLPVRVQLP 11 Unmodified _QVLLPVRVQLP_ 0 0 0 ENSG00000203499|ENST00000527139|IQANK1 ENSG00000203499|ENST00000527139|IQANK1 ENSG00000203499|ENST00000527139|IQANK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 631.4024047851562 2 631.403173 1260.79179 NaN NaN NaN NaN NaN NaN NaN 175.02 1 170.23 169.73 170.73 -4.7898 0 0 0 0.23018 1 35774 35774 8.1555 1.9497 1 36926 7536 24849 24865 36329 36329 0.17182790661968284 QVLRLLRAL 9 Unmodified _QVLRLLRAL_ 0 0 0 ENSG00000164794|ENST00000524391|KCNV1 ENSG00000164794|ENST00000524391|KCNV1 ENSG00000164794|ENST00000524391|KCNV1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2698974609375 2 541.36385 1080.71315 0.24006 0.00012996 -3.7009 -0.0020035 -3.4608 -0.0018736 541.8632083094666 138.1 0.17676 133.45 133.36 133.53 -4.6413 9 4 3 0 0 0 0.87258 1 27254 27254 7.9102 0 1 1279700 36927 5566 24850 24866 36330 36330 0.17601983147574174 QVLRRLLPS 9 Unmodified _QVLRRLLPS_ 0 0 0 REV__ENSG00000075239|ENST00000265838|ACAT1 REV__ENSG00000075239|ENST00000265838|ACAT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2662353515625 2 541.345658 1080.67676 NaN NaN NaN NaN NaN NaN NaN 42.283 1 39.564 39.064 40.064 -2.7191 0 0 0 0.23508 1 7905 7905 4.3292 0 1 + 36928 14327 24851 24867 36331 36331 0.139651062508392 QVLRRLLRQR 10 Unmodified _QVLRRLLRQR_ 0 0 0 ENST00000391858.8_1_1:231473224-231473434:+|nuORF ENST00000391858.8_1_1:231473224-231473434:+|nuORF ENST00000391858.8_1_1:231473224-231473434:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 335.8214111328125 4 335.220469 1336.85277 -0.47511 -0.00015927 -3.829 -0.0012836 -4.3041 -0.0014428 335.47085253147554 37.855 0.41405 35.517 35.188 35.602 -2.3375 19 11 3 0 0 0 0.53283 1 6696 6696 0.69767 0.69767 1 718700 36929 9362 24852 24868 36332 36332 0.19781740484768306 QVLRRLLRQR 10 Unmodified _QVLRRLLRQR_ 0 0 0 ENST00000391858.8_1_1:231473224-231473434:+|nuORF ENST00000391858.8_1_1:231473224-231473434:+|nuORF ENST00000391858.8_1_1:231473224-231473434:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 335.220469 1336.85277 0.078887 2.6444E-05 -3.9656 -0.0013294 -3.8867 -0.0013029 335.47066669907235 37.844 0.48373 35.479 35.15 35.633 -2.3655 -0.019372 -8.4544E-05 NaN 0.69767 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 669850 36930 9362 24852 24868 0.19781740484768306 QVLSFSERV 9 Unmodified _QVLSFSERV_ 0 0 0 REV__nc|ENSG00000204463|P46379-5|BAG6 REV__nc|ENSG00000204463|P46379-5|BAG6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.273193359375 2 532.790381 1063.56621 0.38248 0.00020378 -0.391 -0.00020832 -0.0085136 -4.536E-06 532.7901247736737 68.408 0.69073 65.017 64.596 65.287 -3.3903 44 19 3 0 0 0 0.54058 1 12875 12875 12.241 0 1 5938800 + 36931 19538 24853 24869 36333 36333 0.036968414719467546 QVLTRRERRRL 11 Unmodified _QVLTRRERRRL_ 0 0 0 nc|ENSG00000165046|Q2VYF4-2|LETM2;ENSG00000165046|ENST00000379957|LETM2 nc|ENSG00000165046|Q2VYF4-2|LETM2 nc|ENSG00000165046|Q2VYF4-2|LETM2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.38916015625 2 741.958032 1481.90151 NaN NaN NaN NaN NaN NaN NaN 169.43 1 169.43 168.93 169.93 0 0 0 0 0.2367 1 34778 34778 2.9952 0.26005 1 36932 5590 24854 24870 36334 36334 0.17983609053840155 QVMEDFEE 8 Unmodified _QVMEDFEE_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.175537109375 3 342.807669 1025.40118 -0.12962 -4.4436E-05 0.58789 0.00020153 0.45827 0.0001571 342.8078241026049 124.86 0.98034 120.26 119.88 120.86 -4.5984 88 27 4 0 0 0 0.86478 1 24547 24547 1.4819 0 1 19041000 36933 4208 24855 24871 36335 36335 -0.1105075845000556 QVMEDFEE 8 Unmodified _QVMEDFEE_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 342.807669 1025.40118 -0.36319 -0.00012451 0.819 0.00028076 0.45581 0.00015625 342.8079123161051 119.93 1.0563 119.93 119.51 120.57 0 -0.18747 0.00019151 NaN 1.4819 84 29 4 NaN NaN NaN NaN 0 NaN NaN 0 24599000 36934 4208 24855 24871 -0.1105075845000556 QVMEDFEE 8 Unmodified _QVMEDFEE_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 342.807669 1025.40118 0.36126 0.00012384 0.056976 1.9532E-05 0.41824 0.00014337 342.80764027853206 124.91 1.0534 120.14 119.77 120.83 -4.7681 0.018322 -0.00059217 NaN 1.4819 88 29 4 NaN NaN NaN NaN 0 NaN NaN 0 44104000 36935 4208 24855 24871 -0.1105075845000556 QVMFRNYQRKN 11 Unmodified _QVMFRNYQRKN_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3818969726562 2 742.382977 1482.7514 NaN NaN NaN NaN NaN NaN NaN 88.744 1 84.749 84.249 85.249 -3.9953 0 0 0 0.23018 1 16907 16907 8.1555 2.8586 1 36936 514 24856 24872 36336 36336 0.029335009998931127 QVNHMRRPIFW 11 Unmodified _QVNHMRRPIFW_ 0 0 0 REV__ENST00000531381.1_1_11:121960383-121960554:-|nuORF REV__ENST00000531381.1_1_11:121960383-121960554:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3909301757812 2 742.390605 1482.76666 NaN NaN NaN NaN NaN NaN NaN 126.87 1 122.07 121.57 122.57 -4.7958 0 0 0 0.23698 1 24350 24350 1.3295 0 1 + 36937 22768 24857 24873 36337 36337 0.044584125877690894 QVNIFSDSMY 10 Unmodified _QVNIFSDSMY_ 0 0 0 REV__ENSG00000152133|ENST00000674370|GPATCH11 REV__ENSG00000152133|ENST00000674370|GPATCH11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2844848632812 2 602.271164 1202.52777 NaN NaN NaN NaN NaN NaN NaN 156.06 1 150.81 150.31 151.31 -5.2526 0 0 0 2.8426 1 30266 30266 0.013265 0 1 + 36938 17095 24858 24874 36338 36338 -0.06538832224873659 QVNLATLD 8 Unmodified _QVNLATLD_ 0 0 0 FBN3|p.G2797Afs*4|1|0.38|ENSG00000142449|chr19:8065959-8065959|C/-|frameshift_variant;ENSG00000142449|ENST00000600128|FBN3 FBN3|p.G2797Afs*4|1|0.38|ENSG00000142449|chr19:8065959-8065959|C/-|frameshift_variant FBN3|p.G2797Afs*4|1|0.38|ENSG00000142449|chr19:8065959-8065959|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2167053222656 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 101.53 1 101.53 101.03 102.03 0 0 0 0 0.21486 1 19932 19932 8.5933 0.68312 1 36939 4418 24859 24875 36339 36339 0.019015056264720442 QVPATEPV 8 Unmodified _QVPATEPV_ 0 0 0 REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3 REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 420.8323059082031 2 420.726718 839.438883 NaN NaN NaN NaN NaN NaN NaN 105.77 1 101.68 101.18 102.18 -4.0913 0 0 0 0.23584 1 20350 20350 0.25148 0 1 + 36940 16227 24860 24876 36340 36340 0.01274120597770434 QVPAVRRLPPQ 11 Unmodified _QVPAVRRLPPQ_ 0 0 0 nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4;ENST00000534407.5_1_11:124757602-124761787:-|nuORF;ENST00000532216.5_1_11:124756354-124763822:-|nuORF nc|ENSG00000154133|Q8WZ75-3|ROBO4 nc|ENSG00000154133|Q8WZ75-3|ROBO4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.759521484375 2 630.880396 1259.74624 NaN NaN NaN NaN NaN NaN NaN 159.35 1 154.55 154.05 155.05 -4.7952 0 0 0 0.23429 1 31680 31680 4.897 0.36815 1 36941 4996 24861 24877 36341 36341 0.12675565199606353 QVPDDDELY 9 Unmodified _QVPDDDELY_ 0 0 0 REV__nc|ENSG00000138663|Q9BT78-2|COPS4 REV__nc|ENSG00000138663|Q9BT78-2|COPS4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7927856445312 2 547.237844 1092.46113 0.42808 0.00023426 -3.0189 -0.0016521 -2.5908 -0.0014178 547.7370000026549 120.93 0.14667 116.42 116.3 116.45 -4.5147 5 3 2 0 0 0 0.87258 1 23269 23269 4.3292 0.38484 1 1534300 + 36942 16475 24862 24878 36342 36342 -0.08139744515142411 QVPELWLQI 9 Unmodified _QVPELWLQI_ 0 0 0 REV__GH1|p.S111L|1|0.06|ENSG00000259384|chr17:63917884-63917884|G/A|missense_variant REV__GH1|p.S111L|1|0.06|ENSG00000259384|chr17:63917884-63917884|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 564.3193969726562 2 563.318774 1124.623 0.54852 0.00030899 -0.13774 -7.7589E-05 0.41078 0.0002314 563.3187115775353 174.05 0.45264 169.16 168.94 169.39 -4.8916 24 12 4 0 0 0 0.65153 1 34616 34616 13.906 1.3745 1 40598000 + 36943 23572 24863 24879 36343 36343 0.06566889028476908 QVPELWLQI 9 Unmodified _QVPELWLQI_ 0 0 0 REV__GH1|p.S111L|1|0.06|ENSG00000259384|chr17:63917884-63917884|G/A|missense_variant REV__GH1|p.S111L|1|0.06|ENSG00000259384|chr17:63917884-63917884|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 563.318774 1124.623 0.18178 0.0001024 0.27725 0.00015618 0.45903 0.00025858 563.3187696735122 173.96 0.38115 169.17 168.96 169.34 -4.7898 -0.023322 0.00017801 NaN 13.906 20 10 4 NaN NaN NaN NaN 0 NaN NaN 0 61256000 + 36944 23572 24863 24879 0.06566889028476908 QVPELWLQI 9 Unmodified _QVPELWLQI_ 0 0 0 REV__GH1|p.S111L|1|0.06|ENSG00000259384|chr17:63917884-63917884|G/A|missense_variant REV__GH1|p.S111L|1|0.06|ENSG00000259384|chr17:63917884-63917884|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 563.318774 1124.623 0.17195 9.6862E-05 0.23019 0.00012967 0.40214 0.00022653 563.3187782844599 174.13 0.28342 169.25 169.05 169.34 -4.8845 0.056466 0.00012499 NaN 13.906 20 7 4 NaN NaN NaN NaN 0 NaN NaN 0 43608000 + 36945 23572 24863 24879 0.06566889028476908 QVPGLLLRRY 10 Unmodified _QVPGLLLRRY_ 0 0 0 ENST00000562365.2_1_19:44085322-44085733:+|nuORF ENST00000562365.2_1_19:44085322-44085733:+|nuORF ENST00000562365.2_1_19:44085322-44085733:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 607.5967407226562 2 607.87204 1213.72953 1.1834 0.00071936 -1.2911 -0.00078485 -0.10773 -6.5485E-05 608.3738234262415 170.14 0.17487 165.35 165.24 165.42 -4.7898 6 4 2 0 0 0 0.90598 1 34521 34521 5.7319 2.9967 1 3869700 36946 11314 24864 24880 36344 36344 0.13121064313668285 QVPLFHVRQVS 11 Unmodified _QVPLFHVRQVS_ 0 0 0 REV__ENST00000334534.9_1_20:10601998-10602055:+|nuORF REV__ENST00000334534.9_1_20:10601998-10602055:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.221435546875 3 437.250695 1308.73025 NaN NaN NaN NaN NaN NaN NaN 18.856 1 17.221 16.721 17.721 -1.6351 0 0 0 0.22632 1 2814 2814 0.50596 0 1 + 36947 20647 24865 24881 36345 36345 0.08823858962705344 QVPPHSPPG 9 Unmodified _QVPPHSPPG_ 0 0 0 REV__ENST00000463209.1_1_10:81841489-81845995:+|nuORF REV__ENST00000463209.1_1_10:81841489-81845995:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23822021484375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 56.499 1 53.604 53.104 54.104 -2.8944 0 0 0 0.23508 1 10826 10826 12.532 0 1 + 36948 21918 24866 24882 36346 36346 0.0003634506618936939 QVPPHSPPG 9 Unmodified _QVPPHSPPG_ 0 0 0 REV__ENST00000463209.1_1_10:81841489-81845995:+|nuORF REV__ENST00000463209.1_1_10:81841489-81845995:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2383728027344 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 70.148 1 66.681 66.181 67.181 -3.467 0 0 0 0.23508 1 13282 13282 11.64 2.2929 1 + 36949 21918 24866 24882 36347 36347 0.0003634506618936939 QVPRHVNI 8 Unmodified _QVPRHVNI_ 0 0 0 REV__nc|ENSG00000151553|Q5W0V3-2|FHIP2A REV__nc|ENSG00000151553|Q5W0V3-2|FHIP2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78021240234375 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 150.66 1 150.66 150.16 151.16 0 0 0 0 0.23025 1 30167 30167 0.62683 0 1 + 36950 17073 24867 24883 36348 36348 0.06343715602793054 QVPRHVNI 8 Unmodified _QVPRHVNI_ 0 0 0 REV__nc|ENSG00000151553|Q5W0V3-2|FHIP2A REV__nc|ENSG00000151553|Q5W0V3-2|FHIP2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7792663574219 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 137.7 1 132.86 132.36 133.36 -4.84 0 0 0 0.19954 1 26532 26532 24.674 5.2349 1 + 36951 17073 24867 24883 36349 36349 0.06343715602793054 QVPTKFIYI 9 Unmodified _QVPTKFIYI_ 0 0 0 REV__ENST00000408959.2_1_3:48955513-48955681:-|nuORF REV__ENST00000408959.2_1_3:48955513-48955681:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 554.8261108398438 2 554.823692 1107.63283 NaN NaN NaN NaN NaN NaN NaN 167.18 1 162.23 161.73 162.73 -4.948 0 0 0 0.23508 1 32858 32858 10.074 0.6908 1 + 36952 21399 24868 24884 36350 36350 0.0833207703383323 QVPYQQPP 8 Unmodified _QVPYQQPP_ 0 0 0 REV__nc|ENSG00000075151|O43432-2|EIF4G3 REV__nc|ENSG00000075151|O43432-2|EIF4G3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7438659667969 2 478.745442 955.476331 NaN NaN NaN NaN NaN NaN NaN 91.33 1 87.404 86.904 87.904 -3.9251 0 0 0 0.21486 1 17878 17878 9.3474 0.75416 1 + 36953 13798 24869 24885 36351 36351 -0.003187881366216061 QVQHLLQGR 9 Unmodified _QVQHLLQGR_ 0 0 0 REV__CELSR3|p.R231Gfs*77|1|0.26|ENSG00000008300|chr3:48661944-48661944|G/-|frameshift_variant REV__CELSR3|p.R231Gfs*77|1|0.26|ENSG00000008300|chr3:48661944-48661944|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2074279785156 3 360.208718 1077.60433 NaN NaN NaN NaN NaN NaN NaN 110.2 1 106.02 105.52 106.52 -4.1826 0 0 0 0.19657 1 21208 21208 0.029283 0 1 + 36954 13367 24870 24886 36352 36352 0.0686277217728275 QVQKYDDSFD 10 Unmodified _QVQKYDDSFD_ 0 0 0 ENST00000488504.5_1_22:50691832-50695243:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF;ENST00000497738.1_1_22:50693515-50694479:-|nuORF ENST00000488504.5_1_22:50691832-50695243:-|nuORF ENST00000488504.5_1_22:50691832-50695243:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.775634765625 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 159.3 1 159.3 158.8 159.8 0 0 0 0 0.22588 1 31983 31983 6.7232 0.51738 1 36955 7152 24871 24887 36353 36353 -0.07632981703773112 QVQTHLENP 9 Unmodified _QVQTHLENP_ 0 0 0 nc|ENSG00000187098|O75030-11|MITF;nc|ENSG00000187098|O75030-10|MITF;nc|ENSG00000187098|O75030-9|MITF nc|ENSG00000187098|O75030-11|MITF nc|ENSG00000187098|O75030-11|MITF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2704467773438 2 533.269813 1064.52507 0.17015 9.0737E-05 -1.1044 -0.00058894 -0.93424 -0.0004982 533.2696479088426 126.87 0.77079 122.25 121.84 122.61 -4.6172 47 21 3 0 0 0 0.39189 1 24957 24957 26.268 3.8155 1 2899600 36956 12524 24872 24888 36354 36354 -0.004609195675357114 QVQTHLENP 9 Unmodified _QVQTHLENP_ 0 0 0 nc|ENSG00000187098|O75030-11|MITF;nc|ENSG00000187098|O75030-10|MITF;nc|ENSG00000187098|O75030-9|MITF nc|ENSG00000187098|O75030-11|MITF nc|ENSG00000187098|O75030-11|MITF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 533.269813 1064.52507 0.59343 0.00031646 -1.5742 -0.00083949 -0.9808 -0.00052303 533.2694764365779 127.14 0.53285 122.34 122.03 122.56 -4.7958 33 14 3 0 0 0 0.39189 1 24362 24362 26.268 3.5319 1 1905600 36957 12524 24872 24888 36355 36355 -0.004609195675357114 QVRHKIKW 8 Unmodified _QVRHKIKW_ 0 0 0 ENST00000474535.2_1_2:38545640-38570535:-|nuORF ENST00000474535.2_1_2:38545640-38570535:-|nuORF ENST00000474535.2_1_2:38545640-38570535:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7857055664062 2 547.832717 1093.65088 NaN NaN NaN NaN NaN NaN NaN 141.95 1 141.95 141.45 142.45 0 0 0 0 0.21486 1 28296 28296 8.5933 3.3626 1 36958 10261 24873 24889 36356 36356 0.10780256799216659 QVRIKKLEKRR 11 Unmodified _QVRIKKLEKRR_ 0 0 0 REV__AGGF1|p.K568Q|1|0.3|ENSG00000164252|chr5:77055582-77055582|A/C|missense_variant REV__AGGF1|p.K568Q|1|0.3|ENSG00000164252|chr5:77055582-77055582|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 727.7344970703125 2 727.475526 1452.9365 NaN NaN NaN NaN NaN NaN NaN 174.93 1 170.03 169.53 170.53 -4.8916 0 0 0 0.22632 1 34846 34846 0.00056442 0 1 + 36959 12979 24874 24890 36357 36357 0.22814851861812713 QVRLRRLRRRW 11 Unmodified _QVRLRRLRRRW_ 0 0 0 ENST00000567383.5_1_16:1362559-1362640:+|nuORF ENST00000567383.5_1_16:1362559-1362640:+|nuORF ENST00000567383.5_1_16:1362559-1362640:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 798.0042114257812 2 798.003108 1593.99166 NaN NaN NaN NaN NaN NaN NaN 168.66 1 163.87 163.37 164.37 -4.7898 0 0 0 0.23698 1 34111 34111 1.3295 1.0225 1 36960 11384 24875 24891 36358 36358 0.21842703172933398 QVRLVVTLLGF 11 Unmodified _QVRLVVTLLGF_ 0 0 0 REV__nc|ENSG00000091137|O43511-2|SLC26A4 REV__nc|ENSG00000091137|O43511-2|SLC26A4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7749633789062 2 622.889898 1243.76524 NaN NaN NaN NaN NaN NaN NaN 79.449 1 75.773 75.273 76.273 -3.676 0 0 0 0.23594 1 15136 15136 3.5965 0 1 + 36961 14565 24876 24892 36359 36359 0.15311101770635105 QVRMDPNNI 9 Unmodified _QVRMDPNNI_ 0 0 0 REV__ENST00000588779.1_1_17:40024065-40026676:-|nuORF REV__ENST00000588779.1_1_17:40024065-40026676:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7800903320312 2 543.771665 1085.52878 NaN NaN NaN NaN NaN NaN NaN 124.03 1 124.03 123.53 124.53 0 0 0 0 0.20628 1 24450 24450 21.747 0 1 + 36962 16076 24877 24893 36360 36360 -0.010565730653297578 QVRPGRLRRLL 11 Unmodified _QVRPGRLRRLL_ 0 0 0 REV__UTP18|p.G234Dfs*13|1|0.25|ENSG00000011260|chr17:51273440-51273441|GA/-|frameshift_variant REV__UTP18|p.G234Dfs*13|1|0.25|ENSG00000011260|chr17:51273440-51273441|GA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 682.5086059570312 2 682.441486 1362.86842 NaN NaN NaN NaN NaN NaN NaN 169.67 1 164.74 164.24 165.24 -4.9295 0 0 0 0.23698 1 33512 33512 1.3295 0 1 + 36963 13934 24878 24894 36361 36361 0.20150027001841408 QVRPRHPLRRQ 11 Unmodified _QVRPRHPLRRQ_ 0 0 0 REV__ENST00000589085.5_1_19:5785216-5787684:-|nuORF REV__ENST00000589085.5_1_19:5785216-5787684:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25 3 481.623637 1441.84908 NaN NaN NaN NaN NaN NaN NaN 162.6 1 157.81 157.31 158.31 -4.7898 0 0 0 0.22632 1 32362 32362 0.026206 0 1 + 36964 23307 24879 24895 36362 36362 0.14583070710887114 QVRQIRKKIL 10 Unmodified _QVRQIRKKIL_ 0 0 0 ENST00000411586.1_1_1:226626563-226626776:+|nuORF ENST00000411586.1_1_1:226626563-226626776:+|nuORF ENST00000411586.1_1_1:226626563-226626776:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 641.347900390625 2 641.427513 1280.84047 0.42896 0.00027515 0.56824 0.00036449 0.9972 0.00063963 641.4293561009229 173.96 0.10735 169.07 168.98 169.09 -4.8845 4 2 2 0 0 0 1.1333 1 34548 34548 0.01381 0 1 5181500 36965 9577 24880 24896 36363 36363 0.2112870402174849 QVRQIRKKIL 10 Unmodified _QVRQIRKKIL_ 0 0 0 ENST00000411586.1_1_1:226626563-226626776:+|nuORF ENST00000411586.1_1_1:226626563-226626776:+|nuORF ENST00000411586.1_1_1:226626563-226626776:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 641.427513 1280.84047 1.1862 0.00076088 -3.919 -0.0025137 -2.7328 -0.0017529 641.4261964698816 173.77 0.21143 168.98 168.89 169.1 -4.7898 -0.045401 -0.0023744 NaN 0.01381 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 8015800 36966 9577 24880 24896 0.2112870402174849 QVSEQLSQY 9 Unmodified _QVSEQLSQY_ 0 0 0 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.260986328125 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 74.73 1 71.365 70.865 71.865 -3.3643 0 0 0 0.22621 1 14581 14581 15.847 2.2323 1 + 36967 18081 24881 24897 36364 36364 -0.028280455242793323 QVSFLQIPP 9 Unmodified _QVSFLQIPP_ 0 0 0 nc|ENSG00000249158|Q9Y5I1-2|PCDHA11 nc|ENSG00000249158|Q9Y5I1-2|PCDHA11 nc|ENSG00000249158|Q9Y5I1-2|PCDHA11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.86553955078125 3 343.530687 1027.57023 NaN NaN NaN NaN NaN NaN NaN 92.202 1 92.202 91.702 92.702 0 0 0 0 0.23508 1 18027 18027 1.0715 0.29493 1 36968 12623 24882 24898 36365 36365 0.057549309656678815 QVSPSLVKRQK 11 Unmodified _QVSPSLVKRQK_ 0 0 0 nc|ENSG00000130713|Q13868-3|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 635.2531127929688 2 635.385511 1268.75647 NaN NaN NaN NaN NaN NaN NaN 168.83 1 163.9 163.4 164.4 -4.9295 0 0 0 0.23379 1 33301 33301 5.2969 0.39987 1 36969 3628 24883 24899 36366 36366 0.132841281341598 QVSRLLVEHIW 11 Unmodified _QVSRLLVEHIW_ 0 0 0 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2342834472656 3 460.597983 1378.77212 NaN NaN NaN NaN NaN NaN NaN 12.234 1 12.234 11.734 12.734 0 0 0 0 0.23698 1 1689 1689 1.4551 0.94916 1 36970 7975 24884 24900 36367 36367 0.09788414651234234 QVSSELLQAA 10 Unmodified _QVSSELLQAA_ 0 0 0 REV__ENSG00000125484|ENST00000372146|GTF3C4 REV__ENSG00000125484|ENST00000372146|GTF3C4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6947021484375 2 523.279846 1044.54514 -0.30548 -0.00015985 0.15247 7.9784E-05 -0.15301 -8.0066E-05 523.2800228158357 49.53 0.34901 46.649 46.449 46.798 -2.8811 14 9 2 0 0 0 0.89145 1 9407 9407 12.241 0 1 1131600 + 36971 15817 24885 24901 36368 36368 0.02464831372435583 QVTFDILVYY 10 Unmodified _QVTFDILVYY_ 0 0 0 DEGS1|p.I200V|1|0.16|ENSG00000143753|chr1:224190092-224190092|A/G|missense_variant DEGS1|p.I200V|1|0.16|ENSG00000143753|chr1:224190092-224190092|A/G|missense_variant DEGS1|p.I200V|1|0.16|ENSG00000143753|chr1:224190092-224190092|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7731323242188 2 630.829172 1259.64379 NaN NaN NaN NaN NaN NaN NaN 129.34 1 124.52 124.02 125.02 -4.817 0 0 0 0.22588 1 24829 24829 7.2892 1.0834 1 36972 813 24886 24902 36369 36369 0.0243543461747322 QVTNQTLRF 9 Unmodified _QVTNQTLRF_ 0 0 0 PZP|p.S1434R|1|0.24|ENSG00000126838|chr12:9150728-9150728|T/G|missense_variant PZP|p.S1434R|1|0.24|ENSG00000126838|chr12:9150728-9150728|T/G|missense_variant PZP|p.S1434R|1|0.24|ENSG00000126838|chr12:9150728-9150728|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 553.703125 2 553.80128 1105.58801 NaN NaN NaN NaN NaN NaN NaN 141.76 1 141.76 141.26 142.26 0 0 0 0 0.23508 1 28256 28256 7.2892 0 1 36973 12852 24887 24903 36370 36370 0.03943646220523078 QVTSVGIY 8 Unmodified _QVTSVGIY_ 0 0 0 REV__CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant REV__CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 433.88916015625 2 433.734543 865.454533 0.25857 0.00011215 0.045098 1.956E-05 0.30367 0.00013171 433.7343877257805 38.804 0.60126 38.804 38.423 39.024 0 35 16 3 0 0 0 1.0191 1 7141 7141 2.0598 2.0598 1 4837600 + 36974 13249 24888 24904 36371 36371 0.016424071148207986 QVTWSCELK 9 Unmodified _QVTWSCELK_ 0 0 0 ENST00000466528.5_1_3:120389228-120400958:-|nuORF ENST00000466528.5_1_3:120389228-120400958:-|nuORF ENST00000466528.5_1_3:120389228-120400958:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7890014648438 2 547.270967 1092.52738 0.49389 0.00027029 -0.17164 -9.3932E-05 0.32225 0.00017636 547.2710038415543 157.37 0.56573 152.1 151.76 152.33 -5.2712 26 15 3 0 0 0 0.60061 1 30484 30484 13.042 0.51092 1 2879000 36975 10133 24889 24905 36372 36372 -0.015182071540948527 QVVAFGAKKKK 11 Unmodified _QVVAFGAKKKK_ 0 0 0 ENST00000406961.5_1_2:24991338-24991476:+|nuORF ENST00000406961.5_1_2:24991338-24991476:+|nuORF ENST00000406961.5_1_2:24991338-24991476:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3818359375 2 602.38224 1202.74993 NaN NaN NaN NaN NaN NaN NaN 168.49 1 163.6 163.1 164.1 -4.8916 0 0 0 0.23379 1 33217 33217 5.2969 0.39987 1 36976 9548 24890 24906 36373 36373 0.1566623497344608 QVVGMEPR 8 Unmodified _QVVGMEPR_ 0 0 0 ENST00000595162.5_1_19:57924974-57931056:+|nuORF ENST00000595162.5_1_19:57924974-57931056:+|nuORF ENST00000595162.5_1_19:57924974-57931056:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.226806640625 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 60.866 1 57.933 57.433 58.433 -2.9333 0 0 0 0.21039 1 11721 11721 16.942 0 1 36977 11658 24891 24907 36374 36374 0.003732718485366604 QVVIEPLRS 9 Unmodified _QVVIEPLRS_ 0 0 0 REV__ENSG00000166816|ENST00000450168|LDHD REV__ENSG00000166816|ENST00000450168|LDHD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 521.16845703125 2 520.808574 1039.60259 0.21118 0.00010998 1.3882 0.00072299 1.5994 0.00083298 521.3093694260637 143.17 0.20198 143.17 143.07 143.27 0 6 5 2 0 0 0 0.8372 1 28562 28562 2.7352 2.7352 1 2035100 + 36978 17874 24892 24908 36375 36375 0.08437718368645619 QVVKCWKR 8 Unmodified _QVVKCWKR_ 0 0 0 ENSG00000110422|ENST00000303296|HIPK3;nc|ENSG00000110422|Q9H422-2|HIPK3;HIPK3|p.C434Afs*13|1|0.33|ENSG00000110422|chr11:33337147-33337147|T/-|frameshift_variant;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2 ENSG00000110422|ENST00000303296|HIPK3;nc|ENSG00000064393|Q9H2X6-2|HIPK2 ENSG00000110422|ENST00000303296|HIPK3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7021484375 2 523.800029 1045.5855 NaN NaN NaN NaN NaN NaN NaN 129.21 1 129.21 128.71 129.71 0 0 0 0 0.21039 1 25523 25523 16.942 0 1 36979 2574;1333 24893 24909 36376 36376 0.06453519281853914 QVVKPPQNK 9 Unmodified _QVVKPPQNK_ 0 0 0 ENSG00000109321|ENST00000395748|AREG ENSG00000109321|ENST00000395748|AREG ENSG00000109321|ENST00000395748|AREG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 519.3097534179688 2 519.308741 1036.60293 NaN NaN NaN NaN NaN NaN NaN 163.02 1 163.02 162.52 163.52 0 0 0 0 0.23508 1 32822 32822 3.9444 0 1 36980 2525 24894 24910 36377 36377 0.08609138088490909 QVVLLLLQLL 10 Unmodified _QVVLLLLQLL_ 0 0 0 REV__FKBP10|p.P345Rfs*20|1|0.39|ENSG00000141756|chr17:41819641-41819641|C/-|frameshift_variant REV__FKBP10|p.P345Rfs*20|1|0.39|ENSG00000141756|chr17:41819641-41819641|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3124389648438 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 150.57 1 150.57 150.07 151.07 0 0 0 0 0.22588 1 30148 30148 1.4819 0 1 + 36981 16651 24895 24911 36378 36378 0.19957771544522984 QVVLLLLQLL 10 Unmodified _QVVLLLLQLL_ 0 0 0 REV__FKBP10|p.P345Rfs*20|1|0.39|ENSG00000141756|chr17:41819641-41819641|C/-|frameshift_variant REV__FKBP10|p.P345Rfs*20|1|0.39|ENSG00000141756|chr17:41819641-41819641|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3309326171875 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 137.09 1 132.25 131.75 132.75 -4.84 0 0 0 0.22588 1 26408 26408 1.4819 0.15237 1 + 36982 16651 24895 24911 36379 36379 0.19957771544522984 QVVNPVQQPG 10 Unmodified _QVVNPVQQPG_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2741088867188 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 88.308 1 84.515 84.015 85.015 -3.7926 0 0 0 0.22544 1 17274 17274 19.257 1.1106 1 36983 7385 24896 24912 36380 36380 0.03175957329199264 QVVPRQLLLL 10 Unmodified _QVVPRQLLLL_ 0 0 0 ENST00000474541.1_1_1:247241930-247242071:-|nuORF ENST00000474541.1_1_1:247241930-247242071:-|nuORF ENST00000474541.1_1_1:247241930-247242071:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2704467773438 2 589.884616 1177.75468 NaN NaN NaN NaN NaN NaN NaN 86.944 1 83.217 82.717 83.717 -3.727 0 0 0 2.8426 1 16999 16999 0.063865 0.062484 1 36984 10262 24897 24913 36381 36381 0.17291119116225673 QVVTMGYKII 10 Unmodified _QVVTMGYKII_ 0 0 0 REV__NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant REV__NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3294677734375 2 576.328285 1150.64202 NaN NaN NaN NaN NaN NaN NaN 168.27 1 163.38 162.88 163.88 -4.8916 0 0 0 0.22588 1 33163 33163 13.042 2.8919 1 + 36985 17661 24898 24914 36382 36382 0.07272102327874563 QVVYFTAT 8 Unmodified _QVVYFTAT_ 0 0 0 ENST00000542825.5_1_12:306559-308154:-|nuORF;ENST00000545058.5_1_12:304467-308154:-|nuORF ENST00000542825.5_1_12:306559-308154:-|nuORF ENST00000542825.5_1_12:306559-308154:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 78.1 1 78.1 77.6 78.6 0 0 0 0 0.21486 1 15195 15195 1.6526 0 1 36986 11094 24899 24915 36383 36383 0.003546936318684857 QVVYFTAT 8 Unmodified _QVVYFTAT_ 0 0 0 ENST00000542825.5_1_12:306559-308154:-|nuORF;ENST00000545058.5_1_12:304467-308154:-|nuORF ENST00000542825.5_1_12:306559-308154:-|nuORF ENST00000542825.5_1_12:306559-308154:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 103.6 1 99.382 98.882 99.882 -4.2183 0 0 0 0.23626 1 20371 20371 0.62683 0 1 36987 11094 24899 24915 36384 36384 0.003546936318684857 QVVYFTAT 8 Unmodified _QVVYFTAT_ 0 0 0 ENST00000542825.5_1_12:306559-308154:-|nuORF;ENST00000545058.5_1_12:304467-308154:-|nuORF ENST00000542825.5_1_12:306559-308154:-|nuORF ENST00000542825.5_1_12:306559-308154:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 125.69 1 121.09 120.59 121.59 -4.5984 0 0 0 0.21486 1 24780 24780 1.6526 0 1 36988 11094 24899 24915 36385 36385 0.003546936318684857 QVVYFTAT 8 Unmodified _QVVYFTAT_ 0 0 0 ENST00000542825.5_1_12:306559-308154:-|nuORF;ENST00000545058.5_1_12:304467-308154:-|nuORF ENST00000542825.5_1_12:306559-308154:-|nuORF ENST00000542825.5_1_12:306559-308154:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 107.87 1 103.46 102.96 103.96 -4.4121 0 0 0 0.23881 1 20694 20694 0.62683 0 1 36989 11094 24899 24915 36386 36386 0.003546936318684857 QVYGVFTKFR 10 Unmodified _QVYGVFTKFR_ 0 0 0 REV__ENST00000519132.5_1_5:178032263-178039506:-|nuORF REV__ENST00000519132.5_1_5:178032263-178039506:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7531127929688 2 622.842948 1243.67134 NaN NaN NaN NaN NaN NaN NaN 171.76 1 166.89 166.39 167.39 -4.873 0 0 0 0.22588 1 34054 34054 7.609 0.88579 1 + 36990 22614 24900 24916 36387 36387 0.05925382668374368 QVYYSFFQ 8 Unmodified _QVYYSFFQ_ 0 0 0 MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|34|1|anti-sense MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|34|1|anti-sense MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|34|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2803344726562 2 541.2531 1080.49165 NaN NaN NaN NaN NaN NaN NaN 138.35 1 133.43 132.93 133.93 -4.9216 0 0 0 0.21486 1 26601 26601 8.5933 0.68312 1 36991 12133 24901 24917 36388 36388 -0.045379213394198814 QWELQEYYRWE 11 Unmodified _QWELQEYYRWE_ 0 0 0 REV__tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1 REV__tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3700561523438 2 815.370255 1628.72596 NaN NaN NaN NaN NaN NaN NaN 159.93 1 159.93 159.43 160.43 0 0 0 0 0.23698 1 32111 32111 0 0 1 + 36992 25163 24902 24918 36389 36389 -0.06325695041527979 QWELQEYYRWE 11 Unmodified _QWELQEYYRWE_ 0 0 0 REV__tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1 REV__tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.37060546875 2 815.370255 1628.72596 NaN NaN NaN NaN NaN NaN NaN 151.11 1 146.36 145.86 146.86 -4.7523 0 0 0 0.22632 1 30019 30019 0.094841 0 1 + 36993 25163 24902 24918 36390 36390 -0.06325695041527979 QWGLSFIVP 9 Unmodified _QWGLSFIVP_ 0 0 0 nc|ENSG00000134955|Q8TED4-3|SLC37A2;ENST00000526405.5_1_11:124933263-124955028:+|nuORF;ENSG00000134955|ENST00000403796|SLC37A2;nc|ENSG00000134955|Q8TED4-2|SLC37A2 nc|ENSG00000134955|Q8TED4-3|SLC37A2 nc|ENSG00000134955|Q8TED4-3|SLC37A2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7003173828125 2 523.78711 1045.55967 NaN NaN NaN NaN NaN NaN NaN 35.102 1 32.85 32.35 33.35 -2.2527 0 0 0 0.23508 1 6175 6175 13.042 0 1 36994 3887 24903 24919 36391 36391 0.03870948311259781 QWKIKSYL 8 Unmodified _QWKIKSYL_ 0 0 0 ENST00000533469.5_1_1:211449632-211451486:+|nuORF ENST00000533469.5_1_1:211449632-211451486:+|nuORF ENST00000533469.5_1_1:211449632-211451486:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2758178710938 2 533.30821 1064.60187 NaN NaN NaN NaN NaN NaN NaN 69.484 1 65.948 65.448 66.448 -3.5362 0 0 0 0.21486 1 13081 13081 5.7604 0 1 36995 10995 24904 24920 36392 36392 0.07214923719629951 QWKKAEIKDY 10 Unmodified _QWKKAEIKDY_ 0 0 0 REV__CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2161560058594 3 436.903072 1307.68739 -0.45283 -0.00019784 1.904 0.00083186 1.4512 0.00063402 437.2377624936317 105.95 0.63032 101.69 101.31 101.94 -4.2638 25 17 2 0 0 0 0.91149 1 20802 20802 3.5871 0 1 696900 + 36996 13440;18462 24905 24921 36393 36393 0.045850441146058074 QWKKREQLKKK 11 Unmodified _QWKKREQLKKK_ 0 0 0 REV__nc|ENSG00000166049|Q8IV76-2|PASD1 REV__nc|ENSG00000166049|Q8IV76-2|PASD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21246337890625 4 375.73468 1498.90962 -0.65594 -0.00024646 -0.46305 -0.00017398 -1.119 -0.00042044 375.73453201434427 36.568 0.35443 34.174 34.016 34.37 -2.3944 17 9 3 0 0 0 0.89136 1 6764 6764 0 0 1 654180 + 36997 17821 24906 24922 36394 36394 0.18011743250599466 QWKKREQLKKK 11 Unmodified _QWKKREQLKKK_ 0 0 0 REV__nc|ENSG00000166049|Q8IV76-2|PASD1 REV__nc|ENSG00000166049|Q8IV76-2|PASD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20916748046875 4 375.73468 1498.90962 -0.41554 -0.00015613 -0.54433 -0.00020452 -0.95987 -0.00036066 375.7344817984609 36.43 0.32166 34.093 34.027 34.349 -2.3375 11 8 2 0 0 0 0.89136 1 6462 6462 0 0 1 602720 + 36998 17821 24906 24922 36395 36395 0.18011743250599466 QWLCAPVV 8 Unmodified _QWLCAPVV_ 0 0 0 REV__ENST00000528416.5_1_11:65119226-65119553:+|nuORF REV__ENST00000528416.5_1_11:65119226-65119553:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2301330566406 2 458.241481 914.468409 NaN NaN NaN NaN NaN NaN NaN 84.27 1 84.27 83.77 84.77 0 0 0 0 0.23312 1 16432 16432 6.2058 5.5244 1 + 36999 22724 24907 24923 36396 36396 0.007753613422551098 QWLRLWTQWRR 11 Unmodified _QWLRLWTQWRR_ 0 0 0 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.37109375 2 814.949676 1627.8848 NaN NaN NaN NaN NaN NaN NaN 162.93 1 158.14 157.64 158.64 -4.7898 0 0 0 0.23698 1 32438 32438 1.0715 0.20709 1 37000 6544 24908 24924 36397 36397 0.09597108167895385 QWLVELWRRRR 11 Unmodified _QWLVELWRRRR_ 0 0 0 REV__ENST00000502654.5_1_4:76584063-76598547:-|nuORF REV__ENST00000502654.5_1_4:76584063-76598547:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.273681640625 3 533.311059 1596.91135 NaN NaN NaN NaN NaN NaN NaN 175.32 1 175.32 174.82 175.82 0 0 0 0 0.22632 1 36322 36322 0 0 1 + 37001 22442 24909 24925 36398 36398 0.13676797059224555 QWLWRFISDRY 11 Unmodified _QWLWRFISDRY_ 0 0 0 REV__SYNE4|p.R193W|1|0.24|ENSG00000181392|chr19:36006791-36006791|G/A|missense_variant REV__SYNE4|p.R193W|1|0.24|ENSG00000181392|chr19:36006791-36006791|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.40234375 2 785.401692 1568.78883 NaN NaN NaN NaN NaN NaN NaN 46.483 1 43.642 43.142 44.142 -2.8409 0 0 0 0.22632 1 8776 8776 0.094841 0 1 + 37002 24762 24910 24926 36399 36399 0.027189155371615925 QWLWRFISDRY 11 Unmodified _QWLWRFISDRY_ 0 0 0 REV__SYNE4|p.R193W|1|0.24|ENSG00000181392|chr19:36006791-36006791|G/A|missense_variant REV__SYNE4|p.R193W|1|0.24|ENSG00000181392|chr19:36006791-36006791|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4016723632812 2 785.401692 1568.78883 NaN NaN NaN NaN NaN NaN NaN 155.46 1 150.68 150.18 151.18 -4.7791 0 0 0 0.22632 1 30903 30903 0.094841 0.094841 1 + 37003 24762 24910 24926 36400 36400 0.027189155371615925 QWMLVVLL 8 Unmodified _QWMLVVLL_ 0 0 0 ANXA5|p.R151W|1|0.43|ENSG00000164111|chr4:121678438-121678438|G/A|missense_variant ANXA5|p.R151W|1|0.43|ENSG00000164111|chr4:121678438-121678438|G/A|missense_variant ANXA5|p.R151W|1|0.43|ENSG00000164111|chr4:121678438-121678438|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.0683288574219 3 334.533263 1000.57796 -0.54622 -0.00018273 0.30279 0.00010129 -0.24343 -8.1434E-05 334.5334230599606 12.771 0.17814 12.771 12.683 12.861 0 6 4 2 0 0 0 0.90004 1 1790 1790 0.0082765 0 1 520290 37004 169 24911 24927 36401 36401 0.07769366961599644 QWNSHAGY 8 Unmodified _QWNSHAGY_ 0 0 0 ENST00000425128.6_1_3:27477889-27477940:-|nuORF ENST00000425128.6_1_3:27477889-27477940:-|nuORF ENST00000425128.6_1_3:27477889-27477940:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.781494140625 2 481.709391 961.404229 NaN NaN NaN NaN NaN NaN NaN 132.32 1 127.53 127.03 128.03 -4.799 0 0 0 0.23366 1 25475 25475 1.7423 1.1154 1 37005 9711 24912 24928 36402 36402 -0.07801702490337448 QWQAREGKIQE 11 Unmodified _QWQAREGKIQE_ 0 0 0 REV__ENSG00000215252|ENST00000683415|GOLGA8B REV__ENSG00000215252|ENST00000683415|GOLGA8B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.231201171875 3 458.237114 1371.68951 NaN NaN NaN NaN NaN NaN NaN 88.779 1 84.987 84.487 85.487 -3.7926 0 0 0 0.22632 1 17371 17371 5.4027 3.9476 1 + 37006 18466 24913 24929 36403 36403 0.01853472852417326 QWQQRRWRQQE 11 Unmodified _QWQQRRWRQQE_ 0 0 0 ENST00000416426.6_2_17:55729477-55752284:+|nuORF ENST00000416426.6_2_17:55729477-55752284:+|nuORF ENST00000416426.6_2_17:55729477-55752284:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7877197265625 3 543.609945 1627.808 NaN NaN NaN NaN NaN NaN NaN 171.86 1 166.95 166.45 167.45 -4.9149 0 0 0 0.23698 1 34062 34062 0.094841 0 1 37007 9621 24914 24930 36404 36404 0.01921264880797935 QWREQFDFHLY 11 Unmodified _QWREQFDFHLY_ 0 0 0 MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant;MCTP1|p.K875Rfs*4|3|0.53|ENSG00000175471|chr5:94714873-94714873|T/-|frameshift_variant;ENSG00000175471|ENST00000515393|MCTP1;nc|ENSG00000175471|Q6DN14-5|MCTP1;nc|ENSG00000175471|Q6DN14-4|MCTP1;nc|ENSG00000175471|Q6DN14-3|MCTP1;nc|ENSG00000175471|Q6DN14-2|MCTP1 MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6764526367188 3 523.58088 1567.72081 NaN NaN NaN NaN NaN NaN NaN 136.9 1 132.06 131.56 132.56 -4.84 0 0 0 0.23698 1 26370 26370 0.50596 0 1 37008 6414 24915 24931 36405 36405 -0.040339541134699175 QWRHQRRRRSR 11 Unmodified _QWRHQRRRRSR_ 0 0 0 TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3776245117188 2 811.459596 1620.90464 NaN NaN NaN NaN NaN NaN NaN 60.827 1 57.893 57.393 58.393 -2.9333 0 0 0 0.23698 1 11712 11712 0 0 1 37009 25859 24916 24932 36406 36406 0.11902296951234348 QWRHQRRRRSR 11 Unmodified _QWRHQRRRRSR_ 0 0 0 TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3855590820312 2 811.459596 1620.90464 NaN NaN NaN NaN NaN NaN NaN 172.62 1 167.74 167.24 168.24 -4.881 0 0 0 0.23698 1 34277 34277 1.3295 0.13619 1 37010 25859 24916 24932 36407 36407 0.11902296951234348 QWRMLALR 8 Unmodified _QWRMLALR_ 0 0 0 nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1 nc|ENSG00000130714|Q9Y6A1-4|POMT1 nc|ENSG00000130714|Q9Y6A1-4|POMT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.0483093261719 3 358.539411 1072.5964 -0.10262 -3.6794E-05 -2.3558 -0.00084466 -2.4585 -0.00088146 358.8732453131029 51.004 0.17662 51.004 50.881 51.058 0 5 4 2 0 0 0 1.0248 1 9676 9676 6.7232 0 1 256650 37011 3629 24917 24933 36408 36408 0.06300921656134051 QWSCEYRDSS 10 Unmodified _QWSCEYRDSS_ 0 0 0 REV__IL12RB1|p.P237Hfs*5|1|0.35|ENSG00000096996|chr19:18073590-18073590|G/-|frameshift_variant REV__IL12RB1|p.P237Hfs*5|1|0.35|ENSG00000096996|chr19:18073590-18073590|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7673950195312 2 630.751127 1259.4877 NaN NaN NaN NaN NaN NaN NaN 117.67 1 117.67 117.17 118.17 0 0 0 0 2.8426 1 23178 23178 0.69767 0.69429 1 + 37012 14627 24918 24934 36409 36409 -0.1316637889544836 QYDEDSETYFC 11 Unmodified _QYDEDSETYFC_ 0 0 0 nc|ENSG00000233838|Q9H4G8|DPH3P1 nc|ENSG00000233838|Q9H4G8|DPH3P1 nc|ENSG00000233838|Q9H4G8|DPH3P1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 700.2539672851562 2 700.253365 1398.49218 NaN NaN NaN NaN NaN NaN NaN 5.6203 1 5.6203 5.1203 6.1203 0 0 0 0 0.23698 1 321 321 0 0 1 37013 12612 24919 24935 36410 36410 -0.19112959263202356 QYDQKRLNRWY 11 Unmodified _QYDQKRLNRWY_ 0 0 0 REV__ENSG00000168917|ENST00000446465|SLC35G2 REV__ENSG00000168917|ENST00000446465|SLC35G2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3976440429688 2 785.399681 1568.78481 NaN NaN NaN NaN NaN NaN NaN 124.87 1 124.87 124.37 125.37 0 0 0 0 0.2367 1 24625 24625 2.9952 1.5133 1 + 37014 18067 24920 24936 36411 36411 0.023168260434658805 QYDQKRLNRWY 11 Unmodified _QYDQKRLNRWY_ 0 0 0 REV__ENSG00000168917|ENST00000446465|SLC35G2 REV__ENSG00000168917|ENST00000446465|SLC35G2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4014282226562 2 785.399681 1568.78481 NaN NaN NaN NaN NaN NaN NaN 90.056 1 86.197 85.697 86.697 -3.8595 0 0 0 0.23698 1 17618 17618 1.0715 0.72083 1 + 37015 18067 24920 24936 36412 36412 0.023168260434658805 QYDQKRLNRWY 11 Unmodified _QYDQKRLNRWY_ 0 0 0 REV__ENSG00000168917|ENST00000446465|SLC35G2 REV__ENSG00000168917|ENST00000446465|SLC35G2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4039306640625 2 785.399681 1568.78481 NaN NaN NaN NaN NaN NaN NaN 158.86 1 153.58 153.08 154.08 -5.2748 0 0 0 0.23698 1 30834 30834 1.1933 0.12188 1 + 37016 18067 24920 24936 36413 36413 0.023168260434658805 QYDQKRLNRWY 11 Unmodified _QYDQKRLNRWY_ 0 0 0 REV__ENSG00000168917|ENST00000446465|SLC35G2 REV__ENSG00000168917|ENST00000446465|SLC35G2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3980102539062 2 785.399681 1568.78481 NaN NaN NaN NaN NaN NaN NaN 171.82 1 166.95 166.45 167.45 -4.873 0 0 0 0.22632 1 34064 34064 0.026206 0 1 + 37017 18067 24920 24936 36414 36414 0.023168260434658805 QYESVLDQI 9 Unmodified _QYESVLDQI_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000025008 REV__CON__ENSEMBL:ENSBTAP00000025008 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7719116210938 2 547.771854 1093.52915 0.10288 5.6357E-05 -1.7748 -0.0009722 -1.6719 -0.00091585 547.7708214393871 93.153 0.5451 93.153 92.714 93.259 0 19 15 2 0 0 0 0.52414 1 18202 18202 18.135 5.6034 1 1552800 + + 37018 13509 24921 24937 36415 36415 -0.01386874864465426 QYGDRYLWIDI 11 Unmodified _QYGDRYLWIDI_ 0 0 0 REV__nc|ENSG00000152894|Q15262-3|PTPRK REV__nc|ENSG00000152894|Q15262-3|PTPRK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24200439453125 3 481.241865 1440.70376 NaN NaN NaN NaN NaN NaN NaN 113.65 1 109.37 108.87 109.87 -4.2725 0 0 0 0.22632 1 21886 21886 1.4551 0.8698 1 + 37019 24102 24922 24938 36416 36416 0.0010412528069991822 QYHFRRFRQRF 11 Unmodified _QYHFRRFRQRF_ 0 0 0 REV__ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant REV__ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7759399414062 3 547.627158 1639.85965 0.35361 0.00019365 3.8904 0.0021305 4.244 0.0023241 547.9624873336971 158.11 0.10797 153.32 153.26 153.37 -4.7952 4 2 2 0 0 0 0.96225 1 31446 31446 0.073264 0.073264 1 931310 + 37020 16565 24923 24939 36417 36417 0.06531053365324624 QYHFRRFRQRF 11 Unmodified _QYHFRRFRQRF_ 0 0 0 REV__ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant REV__ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7723388671875 3 547.627158 1639.85965 0.074567 4.0835E-05 -2.6166 -0.0014329 -2.542 -0.0013921 547.6249398199259 134.3 0.17656 129.43 129.33 129.51 -4.8726 6 4 2 0 0 0 0.89124 1 25807 25807 0.026206 0.025642 1 1896200 + 37021 16565 24923 24939 36418 36418 0.06531053365324624 QYHGDNEEEEE 11 Unmodified _QYHGDNEEEEE_ 0 0 0 REV__ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant REV__ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.17254638671875 3 460.172504 1377.49568 NaN NaN NaN NaN NaN NaN NaN 8.422 1 8.422 7.922 8.922 0 0 0 0 0.23698 1 881 881 0 0 1 + 37022 13145 24924 24940 36419 36419 -0.17796573164969232 QYIKITRQQYQ 11 Unmodified _QYIKITRQQYQ_ 0 0 0 ENSG00000158158|ENST00000377075|CNNM4;ARID5A-CNNM4|1|fusion ENSG00000158158|ENST00000377075|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2662353515625 3 490.268414 1467.78341 NaN NaN NaN NaN NaN NaN NaN 46.95 1 44 43.5 44.5 -2.9499 0 0 0 0.22632 1 8558 8558 0.58532 0 1 37023 5154 24925 24941 36420 36420 0.06823191954686081 QYKPRQWCWFR 11 Unmodified _QYKPRQWCWFR_ 0 0 0 REV__ENST00000473990.1_1_7:24784179-24789393:-|nuORF REV__ENST00000473990.1_1_7:24784179-24789393:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2686767578125 3 533.26635 1596.77722 NaN NaN NaN NaN NaN NaN NaN 163.01 1 158.22 157.72 158.72 -4.7898 0 0 0 0.22632 1 32466 32466 0.50596 0 1 + 37024 13670 24926 24942 36421 36421 0.0027039524218253064 QYKSFLRWNM 10 Unmodified _QYKSFLRWNM_ 0 0 0 REV__nc|ENSG00000151353|Q96B42-2|TMEM18 REV__nc|ENSG00000151353|Q96B42-2|TMEM18 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2323913574219 3 458.232535 1371.67578 NaN NaN NaN NaN NaN NaN NaN 127.17 1 122.55 122.05 123.05 -4.6172 0 0 0 2.8426 1 25078 25078 0.013265 0 1 + 37025 17062 24927 24943 36422 36422 0.00480523819624068 QYKSFLRWNM 10 Unmodified _QYKSFLRWNM_ 0 0 0 REV__nc|ENSG00000151353|Q96B42-2|TMEM18 REV__nc|ENSG00000151353|Q96B42-2|TMEM18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2272033691406 3 458.232535 1371.67578 NaN NaN NaN NaN NaN NaN NaN 127.43 1 122.63 122.13 123.13 -4.7958 0 0 0 2.8426 1 24459 24459 0.013265 0 1 + 37026 17062 24927 24943 36423 36423 0.00480523819624068 QYLENYLWM 9 Unmodified _QYLENYLWM_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant;ENST00000558202.1_1_15:35240356-35256599:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7760620117188 2 630.291899 1258.56925 NaN NaN NaN NaN NaN NaN NaN 20.351 1 18.716 18.216 19.216 -1.6351 0 0 0 0.23508 1 3128 3128 2.3027 0.019958 1 37027 190 24928 24944 36424 36424 -0.04969651465580682 QYMQMPLLTLR 11 Unmodified _QYMQMPLLTLR_ 0 0 0 ENST00000426448.1_1_22:20804701-20805505:+|nuORF ENST00000426448.1_1_22:20804701-20805505:+|nuORF ENST00000426448.1_1_22:20804701-20805505:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2500915527344 3 465.249197 1392.72576 NaN NaN NaN NaN NaN NaN NaN 87.102 1 87.102 86.602 87.602 0 0 0 0 0.22632 1 17001 17001 8.4443 3.0416 1 37028 9727 24929 24945 36425 36425 0.04510890433266468 QYMQMPLLTLR 11 Unmodified _QYMQMPLLTLR_ 0 0 0 ENST00000426448.1_1_22:20804701-20805505:+|nuORF ENST00000426448.1_1_22:20804701-20805505:+|nuORF ENST00000426448.1_1_22:20804701-20805505:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25018310546875 3 465.249197 1392.72576 NaN NaN NaN NaN NaN NaN NaN 90.819 1 86.725 86.225 87.225 -4.0946 0 0 0 0.22632 1 17303 17303 8.4443 8.1457 1 37029 9727 24929 24945 36426 36426 0.04510890433266468 QYMQMPLLTLR 11 Unmodified _QYMQMPLLTLR_ 0 0 0 ENST00000426448.1_1_22:20804701-20805505:+|nuORF ENST00000426448.1_1_22:20804701-20805505:+|nuORF ENST00000426448.1_1_22:20804701-20805505:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2497863769531 3 465.249197 1392.72576 NaN NaN NaN NaN NaN NaN NaN 91.03 1 86.935 86.435 87.435 -4.0946 0 0 0 0.22632 1 17345 17345 8.4443 3.0416 1 37030 9727 24929 24945 36427 36427 0.04510890433266468 QYNCKPGYA 9 Unmodified _QYNCKPGYA_ 0 0 0 CFHR4|p.F153Lfs*38|1|0.2|ENSG00000134365|chr1:196906879-196906879|T/-|frameshift_variant;nc|ENSG00000134365|Q92496-2|CFHR4;ENSG00000134365|ENST00000608469|CFHR4 CFHR4|p.F153Lfs*38|1|0.2|ENSG00000134365|chr1:196906879-196906879|T/-|frameshift_variant CFHR4|p.F153Lfs*38|1|0.2|ENSG00000134365|chr1:196906879-196906879|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2716064453125 2 522.234384 1042.45422 NaN NaN NaN NaN NaN NaN NaN 48.632 1 48.632 48.132 49.132 0 0 0 0 0.19687 1 9187 9187 8.1555 0 1 37031 506 24930 24946 36428 36428 -0.0653133587670709 QYPKQRYSSRR 11 Unmodified _QYPKQRYSSRR_ 0 0 0 REV__ENSG00000135912|ENST00000392102|TTLL4 REV__ENSG00000135912|ENST00000392102|TTLL4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25872802734375 3 490.263774 1467.76949 NaN NaN NaN NaN NaN NaN NaN 154.66 1 149.88 149.38 150.38 -4.7791 0 0 0 0.22632 1 30742 30742 1.4551 0 1 + 37032 16298 24931 24947 36429 36429 0.05431959246243423 QYPLIKRLFCI 11 Unmodified _QYPLIKRLFCI_ 0 0 0 REV__PPP1R21|p.Y693Mfs*21|1|0.22|ENSG00000162869|chr2:48507373-48507373|T/-|frameshift_variant REV__PPP1R21|p.Y693Mfs*21|1|0.22|ENSG00000162869|chr2:48507373-48507373|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2510070800781 3 465.272331 1392.79516 NaN NaN NaN NaN NaN NaN NaN 57.679 1 54.474 53.974 54.974 -3.2052 0 0 0 0.22632 1 10750 10750 3.0723 0 1 + 37033 17534 24932 24948 36430 36430 0.1144771744436639 QYQLRYERDVV 11 Unmodified _QYQLRYERDVV_ 0 0 0 TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant;ENSG00000064313|ENST00000378164|TAF2 TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2644958496094 3 490.256285 1467.74703 NaN NaN NaN NaN NaN NaN NaN 19.793 1 18.158 17.658 18.658 -1.6351 0 0 0 0.22632 1 3008 3008 1.4074 0 1 37034 1332 24933 24949 36431 36431 0.03186315057973843 QYREILRFGLV 11 Unmodified _QYREILRFGLV_ 0 0 0 REV__ENST00000489665.1_1_7:2749300-2804387:+|nuORF REV__ENST00000489665.1_1_7:2749300-2804387:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2493896484375 3 465.269866 1392.78777 NaN NaN NaN NaN NaN NaN NaN 115.12 1 110.8 110.3 111.3 -4.3136 0 0 0 0.22632 1 22165 22165 1.4551 0 1 + 37035 18442 24934 24950 36432 36432 0.10708701168277912 QYRHNLHILEA 11 Unmodified _QYRHNLHILEA_ 0 0 0 REV__nc|ENSG00000160188|Q8WYR4-2|RSPH1 REV__nc|ENSG00000160188|Q8WYR4-2|RSPH1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2497253417969 3 465.249354 1392.72623 NaN NaN NaN NaN NaN NaN NaN 82.875 1 79.002 78.502 79.502 -3.8736 0 0 0 0.22632 1 15741 15741 3.0723 1.1659 1 + 37036 17399 24935 24951 36433 36433 0.04557769469010964 QYRHNLHILEA 11 Unmodified _QYRHNLHILEA_ 0 0 0 REV__nc|ENSG00000160188|Q8WYR4-2|RSPH1 REV__nc|ENSG00000160188|Q8WYR4-2|RSPH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25091552734375 3 465.249354 1392.72623 NaN NaN NaN NaN NaN NaN NaN 82.703 1 79.005 78.505 79.505 -3.6985 0 0 0 0.22632 1 15774 15774 1.4551 0 1 + 37037 17399 24935 24951 36434 36434 0.04557769469010964 QYRPSDLLC 9 Unmodified _QYRPSDLLC_ 0 0 0 nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1 nc|ENSG00000107669|O95260-2|ATE1 nc|ENSG00000107669|O95260-2|ATE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77294921875 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 98.464 1 94.195 93.695 94.695 -4.2692 0 0 0 0.22251 1 18822 18822 16.942 4.4107 1 37038 2434 24936 24952 36435 36435 -0.020390912968423436 QYRWPRWLHQQ 11 Unmodified _QYRWPRWLHQQ_ 0 0 0 UGGT2|p.R1301H|1|0.34|ENSG00000102595|chr13:95856264-95856264|C/T|missense_variant UGGT2|p.R1301H|1|0.34|ENSG00000102595|chr13:95856264-95856264|C/T|missense_variant UGGT2|p.R1301H|1|0.34|ENSG00000102595|chr13:95856264-95856264|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2752685546875 3 533.276014 1596.80621 NaN NaN NaN NaN NaN NaN NaN 13.499 1 13.499 12.999 13.999 0 0 0 0 0.22632 1 1953 1953 0.094841 0.094277 1 37039 26548 24937 24953 36436 36436 0.03168255862829028 QYRWPRWLHQQ 11 Unmodified _QYRWPRWLHQQ_ 0 0 0 UGGT2|p.R1301H|1|0.34|ENSG00000102595|chr13:95856264-95856264|C/T|missense_variant UGGT2|p.R1301H|1|0.34|ENSG00000102595|chr13:95856264-95856264|C/T|missense_variant UGGT2|p.R1301H|1|0.34|ENSG00000102595|chr13:95856264-95856264|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27490234375 3 533.276014 1596.80621 NaN NaN NaN NaN NaN NaN NaN 117.48 1 113.07 112.57 113.57 -4.4088 0 0 0 0.22632 1 22610 22610 1.4551 0 1 37040 26548 24937 24953 36437 36437 0.03168255862829028 QYSCCSKC 8 Unmodified _QYSCCSKC_ 0 0 0 REV__nc|ENSG00000170011|Q8NFW9-2|MYRIP REV__nc|ENSG00000170011|Q8NFW9-2|MYRIP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5315246582031 2 461.166798 920.319044 NaN NaN NaN NaN NaN NaN NaN 112.87 1 112.87 112.37 113.37 0 0 0 0 0.23782 1 22197 22197 0.0082765 0 1 + 37041 18136 24938 24954 36438 36438 -0.14430275334314047 QYYNDFPG 8 Unmodified _QYYNDFPG_ 0 0 0 SHC1|p.V363Wfs*2|1|0.31|ENSG00000160691|chr1:154966414-154966414|C/-|frameshift_variant;nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1 SHC1|p.V363Wfs*2|1|0.31|ENSG00000160691|chr1:154966414-154966414|C/-|frameshift_variant SHC1|p.V363Wfs*2|1|0.31|ENSG00000160691|chr1:154966414-154966414|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.1280212402344 3 335.14338 1002.40831 -0.30941 -0.0001037 0.28769 9.6419E-05 -0.021716 -7.2779E-06 335.1434489991195 51.731 2.2258 51.731 51.022 53.248 0 216 62 4 0 0 0 8448 1 9761 9761 0.68139 0.68139 1 100320000 37042 5261 24939 24955 36439 36439 -0.09279657787283213 RAAELVRRV 9 Unmodified _RAAELVRRV_ 0 0 0 REV__USP35|p.M354Wfs*119|1|0.4|ENSG00000118369|chr11:78200664-78200664|C/-|frameshift_variant REV__USP35|p.M354Wfs*119|1|0.4|ENSG00000118369|chr11:78200664-78200664|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55938720703125 3 357.22448 1068.65161 0.74837 0.00026734 1.4376 0.00051356 2.186 0.0007809 357.2249400546642 24.665 0.37549 23.016 22.755 23.131 -1.6482 16 10 2 0 0 0 0.63326 1 4277 4277 10.8 3.6978 1 395680 + 37043 15549 24940 24956 36440 36440 0.12003051448255064 RAAELVRRV 9 Unmodified _RAAELVRRV_ 0 0 0 REV__USP35|p.M354Wfs*119|1|0.4|ENSG00000118369|chr11:78200664-78200664|C/-|frameshift_variant REV__USP35|p.M354Wfs*119|1|0.4|ENSG00000118369|chr11:78200664-78200664|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 357.22448 1068.65161 0.020665 7.3821E-06 2.3193 0.00082852 2.34 0.0008359 357.2252531134962 24.508 0.27488 22.974 22.785 23.06 -1.5342 0.084308 0.00048897 NaN 10.8 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 420240 + 37044 15549 24940 24956 0.12003051448255064 RAAKVNFR 8 Unmodified _RAAKVNFR_ 0 0 0 REV__nc|ENSG00000198160|Q8N108-19|MIER1 REV__nc|ENSG00000198160|Q8N108-19|MIER1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.8492126464844 3 321.194521 960.561733 -0.26964 -8.6607E-05 0.5845 0.00018774 0.31486 0.00010113 321.1947005442585 20.051 0.20632 18.726 18.595 18.801 -1.3251 8 5 2 0 0 0 0.89687 1 3097 3097 3.2813 0 1 268210 + 37045 19393 24941 24957 36441 36441 0.07987421839698072 RAALHLRRLR 10 Unmodified _RAALHLRRLR_ 0 0 0 ENST00000262525.5_1_16:30794287-30794599:-|nuORF ENST00000262525.5_1_16:30794287-30794599:-|nuORF ENST00000262525.5_1_16:30794287-30794599:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 631.40673828125 2 631.407447 1260.80034 NaN NaN NaN NaN NaN NaN NaN 175.93 1 175.93 175.43 176.43 0 0 0 0 2.8426 1 36445 36445 0.0013812 0 1 37046 8314 24942 24958 36442 36442 0.1803720214184068 RAAPVIKRKI 10 Unmodified _RAAPVIKRKI_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3326416015625 2 576.3904 1150.76625 NaN NaN NaN NaN NaN NaN NaN 138.27 1 133.43 132.93 133.93 -4.84 0 0 0 2.8426 1 26644 26644 0 0 1 37047 5053;26536 24943 24959 36443 36443 0.1968936093019238 RAARSSPVV 9 Unmodified _RAARSSPVV_ 0 0 0 ENST00000519876.1_1_8:144351566-144355345:+|nuORF ENST00000519876.1_1_8:144351566-144355345:+|nuORF ENST00000519876.1_1_8:144351566-144355345:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1563415527344 3 314.854164 941.540663 0.10446 3.2889E-05 -0.28919 -9.1054E-05 -0.18474 -5.8165E-05 314.85406463315206 20.949 0.49509 19.475 19.24 19.735 -1.4742 36 13 4 0 0 0 0.72996 1 3491 3491 4.897 0.36815 1 12552000 37048 10827 24944 24960 36444 36444 0.06755411740186901 RAARSSPVV 9 Unmodified _RAARSSPVV_ 0 0 0 ENST00000519876.1_1_8:144351566-144355345:+|nuORF ENST00000519876.1_1_8:144351566-144355345:+|nuORF ENST00000519876.1_1_8:144351566-144355345:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 314.854164 941.540663 -0.52214 -0.0001644 0.35815 0.00011276 -0.16399 -5.1634E-05 314.8542802964016 19.398 0.58861 19.398 19.136 19.725 0 -0.038302 0.00028671 NaN 4.897 43 16 4 NaN NaN NaN NaN 0 NaN NaN 0 14687000 37049 10827 24944 24960 0.06755411740186901 RAARSSPVV 9 Unmodified _RAARSSPVV_ 0 0 0 ENST00000519876.1_1_8:144351566-144355345:+|nuORF ENST00000519876.1_1_8:144351566-144355345:+|nuORF ENST00000519876.1_1_8:144351566-144355345:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 314.854164 941.540663 -0.21912 -6.899E-05 0.039673 1.2491E-05 -0.17944 -5.6498E-05 314.85418896302355 20.821 0.55277 19.437 19.168 19.721 -1.3847 0.00016278 -1.4109E-05 NaN 4.897 42 15 4 NaN NaN NaN NaN 0 NaN NaN 0 12802000 37050 10827 24944 24960 0.06755411740186901 RACHPYPMPE 10 Unmodified _RACHPYPMPE_ 0 0 0 ENST00000603284.1_1_8:77316295-77316445:+|nuORF ENST00000603284.1_1_8:77316295-77316445:+|nuORF ENST00000603284.1_1_8:77316295-77316445:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 400.8475036621094 3 400.847804 1199.52158 NaN NaN NaN NaN NaN NaN NaN 11.112 1 10.045 9.5451 10.545 -1.0664 0 0 0 2.8426 1 1239 1239 0.043787 0.042406 1 37051 11722 24945 24961 36445 36445 -0.07019628937405287 RACLEPNL 8 Unmodified _RACLEPNL_ 0 0 0 REV__ENST00000445768.5_1_6:31632737-31632961:-|nuORF REV__ENST00000445768.5_1_6:31632737-31632961:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.238037109375 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 111.84 1 111.84 111.34 112.34 0 0 0 0 0.21171 1 22004 22004 15.847 0 1 + 37052 21755 24946 24962 36446 36446 0.003732718485366604 RADEVVKY 8 Unmodified _RADEVVKY_ 0 0 0 ZSWIM2|p.K482Nfs*2|2|0.2|ENSG00000163012|chr2:186828440-186828440|T/-|frameshift_variant;ENSG00000163012|ENST00000295131|ZSWIM2 ZSWIM2|p.K482Nfs*2|2|0.2|ENSG00000163012|chr2:186828440-186828440|T/-|frameshift_variant ZSWIM2|p.K482Nfs*2|2|0.2|ENSG00000163012|chr2:186828440-186828440|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26611328125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 63.06 1 63.06 62.56 63.56 0 0 0 0 0.21486 1 12117 12117 10.074 1.4806 1 37053 5393 24947 24963 36447 36447 0.023328834091330464 RADPKHSLY 9 Unmodified _RADPKHSLY_ 0 0 0 ENSG00000074935|ENST00000368662|TUBE1;ENST00000605457.5_1_6:112392617-112397333:-|nuORF ENSG00000074935|ENST00000368662|TUBE1 ENSG00000074935|ENST00000368662|TUBE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7886962890625 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 20.898 1 20.898 20.398 21.398 0 0 0 0 0.10991 1 3476 3476 36.506 14.76 1 37054 1506 24948 24964 36448 36448 0.022433770490579263 RADPKHSLY 9 Unmodified _RADPKHSLY_ 0 0 0 ENSG00000074935|ENST00000368662|TUBE1;ENST00000605457.5_1_6:112392617-112397333:-|nuORF ENSG00000074935|ENST00000368662|TUBE1 ENSG00000074935|ENST00000368662|TUBE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7876586914062 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 22.614 1 20.825 20.325 21.325 -1.7886 0 0 0 0.055781 1 3597 3597 49.554 21.925 1 37055 1506 24948 24964 36449 36449 0.022433770490579263 RADTEYWHDSC 11 Unmodified _RADTEYWHDSC_ 0 0 0 REV__ENSG00000261115|ENST00000565468|TMEM178B REV__ENSG00000261115|ENST00000565468|TMEM178B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.54046630859375 3 461.519181 1381.53571 NaN NaN NaN NaN NaN NaN NaN 12.846 1 12.846 12.346 13.346 0 0 0 0 0.22632 1 1817 1817 0.094841 0 1 + 37056 19885 24949 24965 36450 36450 -0.1397930497539619 RADTEYWHDSC 11 Unmodified _RADTEYWHDSC_ 0 0 0 REV__ENSG00000261115|ENST00000565468|TMEM178B REV__ENSG00000261115|ENST00000565468|TMEM178B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.53173828125 3 461.519181 1381.53571 NaN NaN NaN NaN NaN NaN NaN 15.502 1 14.149 13.649 14.649 -1.3534 0 0 0 0.22632 1 2139 2139 0.50596 0.33396 1 + 37057 19885 24949 24965 36451 36451 -0.1397930497539619 RAEPPEEE 8 Unmodified _RAEPPEEE_ 0 0 0 nc|ENSG00000139154|Q6ZN18|AEBP2;ENSG00000139154|ENST00000266508|AEBP2 nc|ENSG00000139154|Q6ZN18|AEBP2 nc|ENSG00000139154|Q6ZN18|AEBP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7215270996094 2 478.719621 955.42469 NaN NaN NaN NaN NaN NaN NaN 26.725 1 24.943 24.443 25.443 -1.7821 0 0 0 0.20462 1 4727 4727 21.747 3.6117 1 37058 4226 24950 24966 36452 36452 -0.05480576621187083 RAEPPMPR 8 Unmodified _RAEPPMPR_ 0 0 0 REV__BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant REV__BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7212829589844 2 477.252911 952.49127 0.048449 2.3122E-05 -0.16109 -7.6882E-05 -0.11264 -5.3759E-05 477.25299110815087 26.512 0.75406 24.589 24.159 24.913 -1.9222 42 21 4 0 0 0 0.62642 1 4364 4364 20.454 0 1 2530700 + 37059 13188 24951 24967 36453 36453 0.013123804597285016 RAEPPMPR 8 Unmodified _RAEPPMPR_ 0 0 0 REV__BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant REV__BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.252911 952.49127 -0.058342 -2.7844E-05 -0.35585 -0.00016983 -0.41419 -0.00019768 477.2527101797423 24.635 0.60712 24.635 24.406 25.013 0 0.0072357 0.00013118 NaN 20.454 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3829200 + 37060 13188 24951 24967 0.013123804597285016 RAEPPMPR 8 Unmodified _RAEPPMPR_ 0 0 0 REV__BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant REV__BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.252911 952.49127 1.0844 0.00051751 -1.1268 -0.00053778 -0.042461 -2.0265E-05 477.25240419243346 26.431 0.61401 24.649 24.28 24.894 -1.7821 0.022068 -0.00060471 NaN 20.454 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3326400 + 37061 13188 24951 24967 0.013123804597285016 RAEPPMPR 8 Unmodified _RAEPPMPR_ 0 0 0 REV__BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant REV__BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.252911 952.49127 0.11485 5.4811E-05 -0.21134 -0.00010086 -0.096492 -4.6051E-05 477.2528588435967 26.271 0.73255 24.636 24.197 24.929 -1.6347 0.0086647 0.00026911 NaN 20.454 40 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3153800 + 37062 13188 24951 24967 0.013123804597285016 RAEPPMPR 8 Unmodified _RAEPPMPR_ 0 0 0 REV__BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant REV__BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.252911 952.49127 0.048449 2.3122E-05 -0.16109 -7.6882E-05 -0.11264 -5.3759E-05 477.25299110815087 26.512 0.75406 24.589 24.159 24.913 -1.9222 -0.037968 0.00031708 NaN 20.454 42 21 4 NaN NaN NaN NaN 0 NaN NaN 0 2530700 + 37063 13188 24951 24967 0.013123804597285016 RAETEALTA 9 Unmodified _RAETEALTA_ 0 0 0 REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25091552734375 2 481.251089 960.487624 0.08258 3.9742E-05 -0.81517 -0.0003923 -0.73259 -0.00035256 481.2505084892255 37.909 2.4506 37.909 36.887 39.338 0 134 69 4 0 0 0 0.11828 1 7006 7006 49.554 7.7147 1 99259000 + 37064 21385 24952 24968 36454 36454 0.005799891668402779 RAFDLFKRV 9 Unmodified _RAFDLFKRV_ 0 0 0 REV__CASS4|p.E492K|1|0.2|ENSG00000087589|chr20:56452650-56452650|G/A|missense_variant REV__CASS4|p.E492K|1|0.2|ENSG00000087589|chr20:56452650-56452650|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3382568359375 2 576.337833 1150.66111 NaN NaN NaN NaN NaN NaN NaN 6.1071 1 6.1071 5.6071 6.6071 0 0 0 0 0.23508 1 417 417 0.52476 0 1 + 37065 13268 24953 24969 36455 36455 0.09180819733774115 RAFLRWRP 8 Unmodified _RAFLRWRP_ 0 0 0 ENST00000240101.2_1_8:29205463-29205901:-|nuORF ENST00000240101.2_1_8:29205463-29205901:-|nuORF ENST00000240101.2_1_8:29205463-29205901:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.85272216796875 3 367.885799 1100.63557 -0.61311 -0.00022556 -0.77754 -0.00028605 -1.3907 -0.0005116 367.88545132089126 40.745 1.2656 38.256 37.83 39.096 -2.4896 69 35 3 0 0 0 0.87737 1 7242 7242 6.3914 0 1 1174500 37066 8182 24954 24970 36456 36456 0.08927390002031643 RAFMECCCC 9 Unmodified _RAFMECCCC_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2721557617188 2 533.175786 1064.33702 NaN NaN NaN NaN NaN NaN NaN 153.01 1 147.79 147.29 148.29 -5.2209 0 0 0 0.19626 1 29656 29656 0.0033805 0.0033805 1 37067 6095 24955 24971 36457 36457 -0.19257599675484016 RAGFYYIGP 9 Unmodified _RAGFYYIGP_ 0 0 0 nc|ENSG00000110330|Q13490-2|BIRC2;ENSG00000110330|ENST00000227758|BIRC2 nc|ENSG00000110330|Q13490-2|BIRC2 nc|ENSG00000110330|Q13490-2|BIRC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2672729492188 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 16.225 1 16.225 15.725 16.725 0 0 0 0 0.23508 1 2514 2514 4.756 0.42677 1 37068 2572 24956 24972 36458 36458 0.004054911343473577 RAGGFGKA 8 Unmodified _RAGGFGKA_ 0 0 0 nc|ENSG00000137090|Q9Y5R6-3|DMRT1;DMRT1|p.G259Afs*17|1|0.3|ENSG00000137090|chr9:894146-894146|G/-|frameshift_variant;nc|ENSG00000137090|Q9Y5R6-2|DMRT1;ENST00000564322.1_1_9:841703-894198:+|nuORF;ENSG00000137090|ENST00000382276|DMRT1 nc|ENSG00000137090|Q9Y5R6-3|DMRT1 nc|ENSG00000137090|Q9Y5R6-3|DMRT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.859619140625 2 382.214112 762.413671 0.21703 8.2951E-05 -0.60585 -0.00023156 -0.38882 -0.00014861 382.2138516289133 30.617 0.35437 28.501 28.329 28.683 -2.1167 11 9 2 0 0 0 0.89712 1 5510 5510 0.30703 0 1 384160 37069 855 24957 24973 36459 36459 0.022961105858485098 RAGGFGKA 8 Unmodified _RAGGFGKA_ 0 0 0 nc|ENSG00000137090|Q9Y5R6-3|DMRT1;DMRT1|p.G259Afs*17|1|0.3|ENSG00000137090|chr9:894146-894146|G/-|frameshift_variant;nc|ENSG00000137090|Q9Y5R6-2|DMRT1;ENST00000564322.1_1_9:841703-894198:+|nuORF;ENSG00000137090|ENST00000382276|DMRT1 nc|ENSG00000137090|Q9Y5R6-3|DMRT1 nc|ENSG00000137090|Q9Y5R6-3|DMRT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 382.214112 762.413671 -0.13789 -5.2702E-05 0.29978 0.00011458 0.16189 6.1878E-05 382.2141591592885 30.628 0.28241 28.554 28.394 28.677 -2.0743 0.026581 0.00039803 NaN 0.30703 11 7 3 NaN NaN NaN NaN 0 NaN NaN 0 397680 37070 855 24957 24973 0.022961105858485098 RAGKRFEI 8 Unmodified _RAGKRFEI_ 0 0 0 ENSG00000126524|ENST00000246868|SBDS ENSG00000126524|ENST00000246868|SBDS ENSG00000126524|ENST00000246868|SBDS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 326.21661376953125 3 326.194409 975.561398 0.31931 0.00010416 1.8142 0.00059177 2.1335 0.00069592 326.1952582261109 101.46 0.75722 97.135 96.714 97.471 -4.3208 29 21 2 0 0 0 0.80867 1 19401 19401 3.9444 0 1 1326700 37071 3435 24958 24974 36460 36460 0.0726400211985947 RAGKRFEI 8 Unmodified _RAGKRFEI_ 0 0 0 ENSG00000126524|ENST00000246868|SBDS ENSG00000126524|ENST00000246868|SBDS ENSG00000126524|ENST00000246868|SBDS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 326.194409 975.561398 -0.25567 -8.3398E-05 2.8231 0.00092087 2.5674 0.00083747 326.19562720270875 101.44 1.3505 97.278 96.288 97.639 -4.1594 0.071493 0.00053804 NaN 3.9444 48 38 2 NaN NaN NaN NaN 0 NaN NaN 0 1999500 37072 3435 24958 24974 0.0726400211985947 RAGKVAHS 8 Unmodified _RAGKVAHS_ 0 0 0 ENST00000560141.2_1_15:45021411-45021504:+|nuORF ENST00000560141.2_1_15:45021411-45021504:+|nuORF ENST00000560141.2_1_15:45021411-45021504:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 413.084228515625 2 413.238119 824.461684 NaN NaN NaN NaN NaN NaN NaN 111.84 1 111.84 111.34 112.34 0 0 0 0 0.21486 1 22005 22005 12.532 0 1 37073 11282 24959 24975 36461 36461 0.04243184505901354 RAGLVTPP 8 Unmodified _RAGLVTPP_ 0 0 0 nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15 nc|ENSG00000173200|Q460N3-2|PARP15 nc|ENSG00000173200|Q460N3-2|PARP15 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.3002624511719 2 405.745245 809.475937 NaN NaN NaN NaN NaN NaN NaN 83.241 1 79.368 78.868 79.868 -3.8736 0 0 0 0.21486 1 15809 15809 5.2307 0 1 37074 6273 24960 24976 36462 36462 0.06357836934171246 RAGSMDYK 8 Unmodified _RAGSMDYK_ 0 0 0 REV__ENSG00000105141|ENST00000427043|CASP14 REV__ENSG00000105141|ENST00000427043|CASP14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1651611328125 3 309.81661 926.428001 -0.52982 -0.00016415 1.3669 0.00042348 0.83705 0.00025933 309.8169745721281 40.123 0.42514 37.488 37.156 37.581 -2.6348 15 11 2 0 0 0 0.89276 1 7428 7428 0.62683 0 1 547330 + 37075 14964 24961 24977 36463 36463 -0.03815605048168891 RAHALLLL 8 Unmodified _RAHALLLL_ 0 0 0 REV__nc|ENSG00000135439|Q99490-2|AGAP2 REV__nc|ENSG00000135439|Q99490-2|AGAP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7524108886719 2 453.797812 905.581071 NaN NaN NaN NaN NaN NaN NaN 47.397 1 44.528 44.028 45.028 -2.869 0 0 0 0.23782 1 8955 8955 0.25148 0 1 + 37076 16270 24962 24978 36464 36464 0.12450378130620265 RAHRRSWQQKL 11 Unmodified _RAHRRSWQQKL_ 0 0 0 nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3;ENST00000521477.5_1_8:142166019-142175288:+|nuORF nc|ENSG00000105339|A2RUS2|DENND3 nc|ENSG00000105339|A2RUS2|DENND3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 489.2808837890625 3 489.279759 1464.81745 NaN NaN NaN NaN NaN NaN NaN 132.34 1 127.7 127.2 128.2 -4.6399 0 0 0 0.22632 1 26088 26088 0.00056442 0 1 37077 2298 24963 24979 36465 36465 0.10363077956958477 RAICPQKARV 10 Unmodified _RAICPQKARV_ 0 0 0 ENST00000457130.2_1_X:143922603-143922738:+|nuORF ENST00000457130.2_1_X:143922603-143922738:+|nuORF ENST00000457130.2_1_X:143922603-143922738:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21673583984375 3 381.225603 1140.65498 0.0030782 1.1735E-06 -0.60719 -0.00023148 -0.60411 -0.0002303 381.22533192095227 47.53 0.55442 44.588 44.308 44.862 -2.9421 32 15 3 0 0 0 0.74977 1 8619 8619 5.7834 0.48655 1 2756800 37078 10035 24964 24980 36466 36466 0.09027978230597 RAIDFSPYL 9 Unmodified _RAIDFSPYL_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2645874023438 2 541.287474 1080.5604 0.31134 0.00016852 0.8404 0.0004549 1.1517 0.00062342 541.2871893426824 144.76 0.72899 144.76 144.37 145.1 0 37 20 3 0 0 0 0.45972 1 28876 28876 8.1555 1.9497 1 6819000 37079 6200 24965 24981 36467 36467 0.023337429602634074 RAIDFSPYL 9 Unmodified _RAIDFSPYL_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26513671875 2 541.287474 1080.5604 0.31283 0.00016933 0.0019208 1.0397E-06 0.31475 0.00017037 541.2876055663992 149.54 0.73457 144.81 144.42 145.15 -4.7323 36 20 2 0 0 0 0.5428 1 29641 29641 4.897 4.2702 1 4900900 37080 6200 24965 24981 36468 36468 0.023337429602634074 RAKKKAGA 8 Unmodified _RAKKKAGA_ 0 0 0 REV__ENSG00000149596|ENST00000372980|JPH2 REV__ENSG00000149596|ENST00000372980|JPH2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.2718505859375 2 415.271961 828.52937 NaN NaN NaN NaN NaN NaN NaN 155.9 1 155.9 155.4 156.4 0 0 0 0 0.21486 1 31261 31261 2.5775 0 1 + 37081 17015 24966 24982 36469 36469 0.10824634436698943 RAKKKAGA 8 Unmodified _RAKKKAGA_ 0 0 0 REV__ENSG00000149596|ENST00000372980|JPH2 REV__ENSG00000149596|ENST00000372980|JPH2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.2738037109375 2 415.271961 828.52937 NaN NaN NaN NaN NaN NaN NaN 162.05 1 156.87 156.37 157.37 -5.1878 0 0 0 0.21486 1 31460 31460 2.5775 0 1 + 37082 17015 24966 24982 36470 36470 0.10824634436698943 RAKPPPPPP 9 Unmodified _RAKPPPPPP_ 0 0 0 REV__ENSG00000147459|ENST00000276440|DOCK5 REV__ENSG00000147459|ENST00000276440|DOCK5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7267761230469 2 478.787444 955.560336 NaN NaN NaN NaN NaN NaN NaN 101.74 1 97.418 96.918 97.918 -4.3208 0 0 0 0.1902 1 19472 19472 4.7159 0 1 + 37083 16935 24967 24983 36471 36471 0.0807778775093766 RALFQNDKRI 10 Unmodified _RALFQNDKRI_ 0 0 0 REV__ENSG00000087269|ENST00000416614|NOP14 REV__ENSG00000087269|ENST00000416614|NOP14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7687377929688 2 630.862203 1259.70985 NaN NaN NaN NaN NaN NaN NaN 141.01 1 136.02 135.52 136.52 -4.9877 0 0 0 2.8426 1 27147 27147 1.9064 0 1 + 37084 14499 24968 24984 36472 36472 0.09038688302894116 RALKKKKKKK 10 Unmodified _RALKKKKKKK_ 0 0 0 REV__AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense REV__AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 628.4559326171875 2 628.456074 1254.89759 NaN NaN NaN NaN NaN NaN NaN 168.05 1 168.05 167.55 168.55 0 0 0 0 2.8426 1 34383 34383 0 0 1 + 37085 13032 24969 24985 36473 36473 0.28034171298099864 RALKKKKKKKK 11 Unmodified _RALKKKKKKKK_ 0 0 0 REV__AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense REV__AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53631591796875 3 462.004796 1382.99256 NaN NaN NaN NaN NaN NaN NaN 150 1 150 149.5 150.5 0 0 0 0 0.22632 1 30028 30028 0 0 1 + 37086 13032 24970 24986 36474 36474 0.31638104769285746 RALKLGTLS 9 Unmodified _RALKLGTLS_ 0 0 0 nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;CAND1|p.N680Kfs*3|1|0.24|ENSG00000111530|chr12:67305701-67305702|-/A|frameshift_variant;CAND1|p.N662K|1|0.14|ENSG00000111530|chr12:67305654-67305654|C/A|missense_variant nc|ENSG00000111530|Q86VP6-2|CAND1 nc|ENSG00000111530|Q86VP6-2|CAND1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 320.1855773925781 3 320.206315 957.597115 NaN NaN NaN NaN NaN NaN NaN 95.813 1 95.813 95.313 96.313 0 0 0 0 0.23508 1 18768 18768 2.7352 0 1 37087 2625 24971 24987 36475 36475 0.11662039576867755 RALKLGTLS 9 Unmodified _RALKLGTLS_ 0 0 0 nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;CAND1|p.N680Kfs*3|1|0.24|ENSG00000111530|chr12:67305701-67305702|-/A|frameshift_variant;CAND1|p.N662K|1|0.14|ENSG00000111530|chr12:67305654-67305654|C/A|missense_variant nc|ENSG00000111530|Q86VP6-2|CAND1 nc|ENSG00000111530|Q86VP6-2|CAND1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 320.2066650390625 3 320.206315 957.597115 NaN NaN NaN NaN NaN NaN NaN 107.84 1 107.84 107.34 108.34 0 0 0 0 0.19638 1 21205 21205 0.073264 0 1 37088 2625 24971 24987 36476 36476 0.11662039576867755 RALKLGTLS 9 Unmodified _RALKLGTLS_ 0 0 0 nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;CAND1|p.N680Kfs*3|1|0.24|ENSG00000111530|chr12:67305701-67305702|-/A|frameshift_variant;CAND1|p.N662K|1|0.14|ENSG00000111530|chr12:67305654-67305654|C/A|missense_variant nc|ENSG00000111530|Q86VP6-2|CAND1 nc|ENSG00000111530|Q86VP6-2|CAND1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 320.18585205078125 3 320.206315 957.597115 NaN NaN NaN NaN NaN NaN NaN 108.11 1 108.11 107.61 108.61 0 0 0 0 0.19638 1 21260 21260 0.073264 0 1 37089 2625 24971 24987 36477 36477 0.11662039576867755 RALKLGTLS 9 Unmodified _RALKLGTLS_ 0 0 0 nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;CAND1|p.N680Kfs*3|1|0.24|ENSG00000111530|chr12:67305701-67305702|-/A|frameshift_variant;CAND1|p.N662K|1|0.14|ENSG00000111530|chr12:67305654-67305654|C/A|missense_variant nc|ENSG00000111530|Q86VP6-2|CAND1 nc|ENSG00000111530|Q86VP6-2|CAND1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.18603515625 3 320.206315 957.597115 NaN NaN NaN NaN NaN NaN NaN 80.527 1 76.839 76.339 77.339 -3.6879 0 0 0 0.23508 1 15354 15354 2.7352 0 1 37090 2625 24971 24987 36478 36478 0.11662039576867755 RALLLKQLK 9 Unmodified _RALLLKQLK_ 0 0 0 REV__ENST00000520099.5_1_8:92145476-92219037:+|nuORF REV__ENST00000520099.5_1_8:92145476-92219037:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.27587890625 2 541.874051 1081.73355 0.43502 0.00023573 -0.68518 -0.00037128 -0.25016 -0.00013555 542.3766702181023 149.77 0.14174 144.65 144.54 144.68 -5.1204 4 3 2 0 0 0 0.6226 1 29027 29027 4.897 4.8237 1 686770 + 37091 19679 24972 24988 36479 36479 0.19595153807358656 RALPSEDEE 9 Unmodified _RALPSEDEE_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-3|SYNE1;nc|ENSG00000131018|Q8NF91-11|SYNE1;nc|ENSG00000131018|Q8NF91-9|SYNE1;ENST00000460912.6_1_6:152443573-152489284:-|nuORF ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7014770507812 2 523.24346 1044.47237 NaN NaN NaN NaN NaN NaN NaN 164.24 1 159.2 158.7 159.7 -5.0446 0 0 0 0.23508 1 32019 32019 7.2892 0.56607 1 37092 3655 24973 24989 36480 36480 -0.048089224209888926 RAPGHPFF 8 Unmodified _RAPGHPFF_ 0 0 0 ENST00000218981.5_1_13:52343290-52346021:-|nuORF;ENST00000469957.5_1_13:52342813-52346021:-|nuORF ENST00000218981.5_1_13:52343290-52346021:-|nuORF ENST00000218981.5_1_13:52343290-52346021:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1645202636719 3 310.16445 927.471521 NaN NaN NaN NaN NaN NaN NaN 148.32 1 143.26 142.76 143.76 -5.0595 0 0 0 0.2396 1 28726 28726 0 0 1 37093 8125 24974 24990 36481 36481 0.004883725112790671 RAPGSCVSP 9 Unmodified _RAPGSCVSP_ 0 0 0 REV__PC|p.A24Lfs*41|1|0.13|ENSG00000173599|chr11:66872091-66872091|G/-|frameshift_variant REV__PC|p.A24Lfs*41|1|0.13|ENSG00000173599|chr11:66872091-66872091|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2156677246094 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 103.18 1 99.163 98.663 99.663 -4.0212 0 0 0 0.23508 1 19838 19838 11.64 0 1 + 37094 24436 24975 24991 36482 36482 -0.023875877026057424 RAPLGLIPPI 10 Unmodified _RAPLGLIPPI_ 0 0 0 ENST00000311601.5_1_5:171764958-171765231:-|nuORF ENST00000311601.5_1_5:171764958-171765231:-|nuORF ENST00000311601.5_1_5:171764958-171765231:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 350.2304382324219 3 349.56221 1045.6648 0.092305 3.2266E-05 -0.1749 -6.1137E-05 -0.082591 -2.8871E-05 349.56210426600364 142.07 1.2029 137.04 136.48 137.69 -5.0261 114 34 4 0 0 0 0.36162 1 27483 27483 14.405 11.774 1 46488000 37095 8654 24976 24992 36483 36483 0.14379489507655308 RAPLPPGLLL 10 Unmodified _RAPLPPGLLL_ 0 0 0 ENST00000417456.1_1_1:35441975-35442986:-|nuORF ENST00000417456.1_1_1:35441975-35442986:-|nuORF ENST00000417456.1_1_1:35441975-35442986:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.5648498535156 3 349.56221 1045.6648 -0.22707 -7.9374E-05 0.1593 5.5684E-05 -0.067773 -2.3691E-05 349.5622145637808 141.66 1.1808 137.01 136.4 137.58 -4.6493 116 33 5 0 0 0 0.25854 1 28046 28046 19.362 0 1 61300000 37096 9629 24977 24993 36484 36484 0.14379489507655308 RAPPLPVPD 9 Unmodified _RAPPLPVPD_ 0 0 0 REV__ENST00000403724.5_1_3:105400320-105400470:-|nuORF REV__ENST00000403724.5_1_3:105400320-105400470:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25067138671875 2 481.276909 960.539266 NaN NaN NaN NaN NaN NaN NaN 103.91 1 99.696 99.196 100.2 -4.2183 0 0 0 0.22621 1 20433 20433 15.847 3.3156 1 + 37097 15374 24978 24994 36485 36485 0.05741777651405755 RAPRSWLA 8 Unmodified _RAPRSWLA_ 0 0 0 ENST00000358215.8_1_2:220363657-220363894:+|nuORF ENST00000358215.8_1_2:220363657-220363894:+|nuORF ENST00000358215.8_1_2:220363657-220363894:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73187255859375 2 478.774868 955.535184 -0.0025986 -1.2441E-06 0.78136 0.0003741 0.77876 0.00037285 478.7750649174369 26.254 0.47531 26.254 26.019 26.495 0 22 13 2 0 0 0 8448 1 4560 4560 6.2058 0 1 1219400 37098 8986 24979 24995 36486 36486 0.0556373294837158 RAPSPEPR 8 Unmodified _RAPSPEPR_ 0 0 0 ENST00000607241.1_1_2:9696254-9696722:+|nuORF ENST00000607241.1_1_2:9696254-9696722:+|nuORF ENST00000607241.1_1_2:9696254-9696722:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 455.29827880859375 2 455.248683 908.482814 NaN NaN NaN NaN NaN NaN NaN 57.584 1 54.69 54.19 55.19 -2.8944 0 0 0 0.23312 1 11053 11053 6.2058 0 1 37099 11757 24980 24996 36487 36487 0.024911498147503153 RAPVFIRVK 9 Unmodified _RAPVFIRVK_ 0 0 0 REV__ENSG00000164258|ENST00000296684|NDUFS4 REV__ENSG00000164258|ENST00000296684|NDUFS4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7776489257812 2 543.350743 1084.68693 0.36255 0.00019699 -4.3385 -0.0023573 -3.976 -0.0021604 543.3493716757781 154.48 0.10114 149.7 149.64 149.74 -4.7791 4 2 2 0 0 0 0.58921 1 30692 30692 4.897 1.6157 1 788410 + 37100 17665 24981 24997 36488 36488 0.14797713976054183 RAQPARAH 8 Unmodified _RAQPARAH_ 0 0 0 REV__ENST00000321867.5_1_12:132406406-132406787:+|nuORF REV__ENST00000321867.5_1_12:132406406-132406787:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7527770996094 2 453.754467 905.494381 NaN NaN NaN NaN NaN NaN NaN 121.88 1 121.88 121.38 122.38 0 0 0 0 0.23749 1 24026 24026 0.0082765 0 1 + 37101 20553 24982 24998 36489 36489 0.03785391628741763 RAQRGLWH 8 Unmodified _RAQRGLWH_ 0 0 0 REV__ENST00000391942.6_1_19:45854889-45865127:-|nuORF REV__ENST00000391942.6_1_19:45854889-45865127:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 512.2713012695312 2 512.283392 1022.55223 NaN NaN NaN NaN NaN NaN NaN 148.95 1 143.89 143.39 144.39 -5.0595 0 0 0 0.23749 1 28859 28859 0.12286 0 1 + 37102 21206 24983 24999 36490 36490 0.041856535541683115 RAQTTVFRY 9 Unmodified _RAQTTVFRY_ 0 0 0 REV__ENSG00000141385|ENST00000269143|AFG3L2 REV__ENSG00000141385|ENST00000269143|AFG3L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2086181640625 3 381.208607 1140.60399 -0.12657 -4.8249E-05 0.50916 0.0001941 0.3826 0.00014585 381.54317276778653 33.245 0.59426 33.245 33.059 33.654 0 29 16 2 0 0 0 0.24263 2 6049 6049;6097 34.932 23.414 1 2449900 + 37103 16623 24984 25000 36491;36492 36491 0.03931352457425419 RAQTTVFRY 9 Unmodified _RAQTTVFRY_ 0 0 0 REV__ENSG00000141385|ENST00000269143|AFG3L2 REV__ENSG00000141385|ENST00000269143|AFG3L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20855712890625 3 381.208607 1140.60399 -0.5781 -0.00022037 0.59088 0.00022525 0.012789 4.8752E-06 381.2088279038751 35.704 0.57381 33.31 33.055 33.628 -2.3938 40 15 4 0 0 0 0.45059 1 6600 6600 22.658 12.894 1 1459100 + 37104 16623 24984 25000 36493 36493 0.03931352457425419 RAQTTVFRY 9 Unmodified _RAQTTVFRY_ 0 0 0 REV__ENSG00000141385|ENST00000269143|AFG3L2 REV__ENSG00000141385|ENST00000269143|AFG3L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.20855712890625 3 381.208607 1140.60399 0.15102 5.7569E-05 -0.16229 -6.1868E-05 -0.011278 -4.2993E-06 381.20856166406134 35.517 0.55087 33.265 33.09 33.641 -2.2527 35 15 3 0 0 0 0.18865 2 6247 6247;6294 38.615 27.716 1 2252400 + 37105 16623 24984 25000 36494;36495 36494 0.03931352457425419 RAQTTVFRY 9 Unmodified _RAQTTVFRY_ 0 0 0 REV__ENSG00000141385|ENST00000269143|AFG3L2 REV__ENSG00000141385|ENST00000269143|AFG3L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2085266113281 3 381.208607 1140.60399 -0.36214 -0.00013805 0.38985 0.00014862 0.02771 1.0563E-05 381.2087129186772 35.574 0.5603 33.298 33 33.56 -2.2766 31 15 3 0 0 0 0.35429 1 6260 6260 28.495 14.976 1 1521000 + 37106 16623 24984 25000 36496 36496 0.03931352457425419 RAQTTVFRY 9 Unmodified _RAQTTVFRY_ 0 0 0 REV__ENSG00000141385|ENST00000269143|AFG3L2 REV__ENSG00000141385|ENST00000269143|AFG3L2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 381.208607 1140.60399 -0.5781 -0.00022037 0.59088 0.00022525 0.012789 4.8752E-06 381.2088279038751 35.704 0.57381 33.31 33.055 33.628 -2.3938 0.030898 0.000283 NaN 38.615 40 15 4 NaN NaN NaN NaN 0 NaN NaN 0 1459100 + 37107 16623 24984 25000 0.03931352457425419 RAQTTVFRY 9 Unmodified _RAQTTVFRY_ 0 0 0 REV__ENSG00000141385|ENST00000269143|AFG3L2 REV__ENSG00000141385|ENST00000269143|AFG3L2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 381.208607 1140.60399 0.15102 5.7569E-05 -0.16229 -6.1868E-05 -0.011278 -4.2993E-06 381.20856166406134 35.517 0.55087 33.265 33.09 33.641 -2.2527 -0.014906 -0.00057835 NaN 38.615 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2252400 + 37108 16623 24984 25000 0.03931352457425419 RAQTTVFRY 9 Unmodified _RAQTTVFRY_ 0 0 0 REV__ENSG00000141385|ENST00000269143|AFG3L2 REV__ENSG00000141385|ENST00000269143|AFG3L2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 381.208607 1140.60399 -0.36214 -0.00013805 0.38985 0.00014862 0.02771 1.0563E-05 381.2087129186772 35.574 0.5603 33.298 33 33.56 -2.2766 0.018271 5.3098E-05 NaN 38.615 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1521000 + 37109 16623 24984 25000 0.03931352457425419 RARAEPRGCA 10 Unmodified _RARAEPRGCA_ 0 0 0 ENST00000575214.1_1_16:3073840-3074149:-|nuORF ENST00000575214.1_1_16:3073840-3074149:-|nuORF ENST00000575214.1_1_16:3073840-3074149:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.779541015625 2 543.782899 1085.55124 0.81454 0.00044293 1.2426 0.00067572 2.0572 0.0011187 543.7837233856028 106.2 1.5902 102.11 101.16 102.75 -4.0913 145 45 5 0 0 0 0.47611 1 20275 20275 6.6304 0.42459 1 30328000 37110 11450 24985 25001 36497 36497 0.011890711229625595 RARAILLPQP 10 Unmodified _RARAILLPQP_ 0 0 0 AluSx1_dup105873|chr19:18572335-18572629:-|1.161203101244476|0.0188810566591458|5.94|480.0|12|1|anti-sense AluSx1_dup105873|chr19:18572335-18572629:-|1.161203101244476|0.0188810566591458|5.94|480.0|12|1|anti-sense AluSx1_dup105873|chr19:18572335-18572629:-|1.161203101244476|0.0188810566591458|5.94|480.0|12|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 567.8966064453125 2 567.858932 1133.70331 NaN NaN NaN NaN NaN NaN NaN 170.93 1 166.14 165.64 166.64 -4.7898 0 0 0 0.22588 1 34724 34724 10.074 2.7847 1 37111 135 24986 25002 36498 36498 0.141807951421697 RARPHTPK 8 Unmodified _RARPHTPK_ 0 0 0 REV__ENST00000530879.1_1_8:146029451-146033777:+|nuORF REV__ENST00000530879.1_1_8:146029451-146033777:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7843322753906 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 12.667 1 12.667 12.167 13.167 0 0 0 0 0.21486 1 1780 1780 4.756 0 1 + 37112 19329 24987 25003 36499 36499 0.07466537696927844 RARPKHAA 8 Unmodified _RARPKHAA_ 0 0 0 REV__LRWD1|p.V387Sfs*120|1|0.37|ENSG00000161036|chr7:102468990-102468990|G/-|frameshift_variant REV__LRWD1|p.V387Sfs*120|1|0.37|ENSG00000161036|chr7:102468990-102468990|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7611389160156 2 453.77266 905.530767 NaN NaN NaN NaN NaN NaN NaN 13.301 1 12.128 11.628 12.628 -1.173 0 0 0 0.2396 1 1713 1713 0.12286 0 1 + 37113 17448 24988 25004 36500 36500 0.07422268525454001 RARPVAKPAGK 11 Unmodified _RARPVAKPAGK_ 0 0 0 ENST00000469820.1_1_X:102884578-102884773:+|nuORF ENST00000469820.1_1_X:102884578-102884773:+|nuORF ENST00000469820.1_1_X:102884578-102884773:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 384.2376708984375 3 384.243763 1149.70946 NaN NaN NaN NaN NaN NaN NaN 176.87 1 172 171.5 172.5 -4.8739 0 0 0 0.23698 1 35193 35193 0.40827 0.17242 1 37114 10187 24989 25005 36501 36501 0.1405931337369566 RARRREERRKR 11 Unmodified _RARRREERRKR_ 0 0 0 ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.694091796875 3 523.652478 1567.9356 NaN NaN NaN NaN NaN NaN NaN 161.73 1 161.73 161.23 162.23 0 0 0 0 0.23698 1 32486 32486 1.3296 0.87513 1 37115 3777 24990 25006 36502 36502 0.17435450265452346 RARRRRFLWRR 11 Unmodified _RARRRRFLWRR_ 0 0 0 REV__sp|P09707|US31_HCMVAUncharacterizedproteinHHRF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US31PE=3SV=3 REV__sp|P09707|US31_HCMVAUncharacterizedproteinHHRF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US31PE=3SV=3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3806762695312 2 815.0009 1627.98725 NaN NaN NaN NaN NaN NaN NaN 153 1 153 152.5 153.5 0 0 0 0 0.23698 1 30651 30651 0 0 1 + 37116 24678 24991 25007 36503 36503 0.19837238750051256 RARRRRFLWRR 11 Unmodified _RARRRRFLWRR_ 0 0 0 REV__sp|P09707|US31_HCMVAUncharacterizedproteinHHRF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US31PE=3SV=3 REV__sp|P09707|US31_HCMVAUncharacterizedproteinHHRF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US31PE=3SV=3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3648681640625 2 815.0009 1627.98725 NaN NaN NaN NaN NaN NaN NaN 153.01 1 153.01 152.51 153.51 0 0 0 0 0.22632 1 30654 30654 0 0 1 + 37117 24678 24991 25007 36504 36504 0.19837238750051256 RARRRRFLWRR 11 Unmodified _RARRRRFLWRR_ 0 0 0 REV__sp|P09707|US31_HCMVAUncharacterizedproteinHHRF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US31PE=3SV=3 REV__sp|P09707|US31_HCMVAUncharacterizedproteinHHRF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US31PE=3SV=3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3648681640625 2 815.0009 1627.98725 NaN NaN NaN NaN NaN NaN NaN 153.03 1 153.03 152.53 153.53 0 0 0 0 0.23698 1 30657 30657 0 0 1 + 37118 24678 24991 25007 36505 36505 0.19837238750051256 RARTRLDPRFR 11 Unmodified _RARTRLDPRFR_ 0 0 0 REV__ASXL1|p.S412F|1|0.38|ENSG00000171456|chr20:32433433-32433433|C/T|missense_variant REV__ASXL1|p.S412F|1|0.38|ENSG00000171456|chr20:32433433-32433433|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7816162109375 3 481.951642 1442.8331 0.084806 4.0872E-05 0.0786 3.7881E-05 0.16341 7.8753E-05 481.95195469104146 129.45 0.42838 124.71 124.46 124.89 -4.7408 14 11 2 0 0 0 0.65515 1 24870 24870 3.0723 1.1659 1 603810 + 37119 13135 24992 25008 36506 36506 0.12939364473982096 RARWTETY 8 Unmodified _RARWTETY_ 0 0 0 ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B ENSG00000106263|ENST00000360876|EIF3B ENSG00000106263|ENST00000360876|EIF3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2648315429688 2 541.772522 1081.53049 0.29144 0.00015789 -1.4458 -0.0007833 -1.1544 -0.00062541 541.7717409768662 127.53 0.52319 122.91 122.64 123.17 -4.6172 21 14 2 0 0 0 0.86212 1 25122 25122 2.643 0 1 1636900 37120 2369 24993 25009 36507 36507 -0.007011959850387939 RASRLAVG 8 Unmodified _RASRLAVG_ 0 0 0 ENST00000543852.5_1_12:121975283-121975502:-|nuORF ENST00000543852.5_1_12:121975283-121975502:-|nuORF ENST00000543852.5_1_12:121975283-121975502:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.2548828125 2 415.253769 828.492984 NaN NaN NaN NaN NaN NaN NaN 161.81 1 156.62 156.12 157.12 -5.1878 0 0 0 0.21486 1 31407 31407 8.5933 0 1 37121 11103 24994 25010 36508 36508 0.07187757539998074 RASVLYGY 8 Unmodified _RASVLYGY_ 0 0 0 ENST00000307714.12_1_1:32503693-32508222:+|nuORF ENST00000307714.12_1_1:32503693-32508222:+|nuORF ENST00000307714.12_1_1:32503693-32508222:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24969482421875 2 464.747985 927.481417 -0.080844 -3.7572E-05 0.0012506 5.8119E-07 -0.079594 -3.6991E-05 464.7479487037125 57.086 0.55929 57.086 56.916 57.475 0 24 15 2 0 0 0 8448 1 10916 10916 6.2058 0 1 1562400 37122 8615 24995 25011 36509 36509 0.014775157260032756 RATQWVGF 8 Unmodified _RATQWVGF_ 0 0 0 REV__SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant REV__SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.1702575683594 3 322.171493 963.49265 NaN NaN NaN NaN NaN NaN NaN 155.62 1 150.84 150.34 151.34 -4.7791 0 0 0 0.21486 1 30934 30934 1.8442 0 1 + 37123 24733 24996 25012 36510 36510 0.009443378201467567 RAVHQFAK 8 Unmodified _RAVHQFAK_ 0 0 0 EPHA7|p.N618D|1|0.26|ENSG00000135333|chr6:93259426-93259426|T/C|missense_variant;nc|ENSG00000135333|Q15375-2|EPHA7;nc|ENSG00000135333|Q15375-4|EPHA7;ENSG00000135333|ENST00000369303|EPHA7 EPHA7|p.N618D|1|0.26|ENSG00000135333|chr6:93259426-93259426|T/C|missense_variant EPHA7|p.N618D|1|0.26|ENSG00000135333|chr6:93259426-93259426|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.732666015625 2 478.774868 955.535184 0.3009 0.00014406 0.0028373 1.3585E-06 0.30373 0.00014542 478.77482931719965 28.342 0.56038 26.346 26.064 26.625 -1.9962 28 15 3 0 0 0 8448 1 4740 4740 6.2058 0 1 778430 37124 3917 24997 25013 36511 36511 0.0556373294837158 RAVRILQFRLY 11 Unmodified _RAVRILQFRLY_ 0 0 0 nc|ENSG00000184156|O43525-2|KCNQ3;ENST00000519589.1_1_8:133141511-133152462:-|nuORF;KCNQ3|p.F713Lfs*6|1|0.24|ENSG00000184156|chr8:132129742-132129742|A/-|frameshift_variant;ENSG00000184156|ENST00000388996|KCNQ3;KCNQ3|p.Q653Rfs*16|1|0.06|ENSG00000184156|chr8:132129923-132129924|-/C|frameshift_variant nc|ENSG00000184156|O43525-2|KCNQ3 nc|ENSG00000184156|O43525-2|KCNQ3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7268371582031 3 478.961256 1433.86194 NaN NaN NaN NaN NaN NaN NaN 74.488 1 74.488 73.988 74.988 0 0 0 0 0.22632 1 14462 14462 0.58532 0.49048 1 37125 12509 24998 25014 36512 36512 0.16236089050471492 RAVVNPEM 8 Unmodified _RAVVNPEM_ 0 0 0 REV__ENSG00000174928|ENST00000340171|C3orf33 REV__ENSG00000174928|ENST00000340171|C3orf33 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2259216308594 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 87.268 1 83.539 83.039 84.039 -3.7289 0 0 0 0.23312 1 16694 16694 6.2344 6.1611 1 + 37126 18439 24999 25015 36513 36513 0.003732718485366604 RAVVSPMN 8 Unmodified _RAVVSPMN_ 0 0 0 ENST00000376499.7_2_9:84198660-84198882:-|nuORF ENST00000376499.7_2_9:84198660-84198882:-|nuORF ENST00000376499.7_2_9:84198660-84198882:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22613525390625 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 54.13 1 54.13 53.63 54.63 0 0 0 0 0.23312 1 10320 10320 6.2058 2.9245 1 37127 9249 25000 25016 36514 36514 0.012492891941178641 RAWEHQLF 8 Unmodified _RAWEHQLF_ 0 0 0 REV__ENSG00000115808|ENST00000263918|STRN REV__ENSG00000115808|ENST00000263918|STRN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7780151367188 2 543.777608 1085.54066 NaN NaN NaN NaN NaN NaN NaN 145.03 1 139.96 139.46 140.46 -5.0671 0 0 0 0.22699 1 28007 28007 0.25148 0 1 + 37128 15450 25001 25017 36515 36515 0.001314117401761905 RAWLHWMLWAN 11 Unmodified _RAWLHWMLWAN_ 0 0 0 REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|66|2|sense REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|66|2|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.376708984375 2 742.374423 1482.73429 NaN NaN NaN NaN NaN NaN NaN 118.95 1 114.45 113.95 114.95 -4.502 0 0 0 0.22632 1 23456 23456 0 0 1 + 37129 23618 25002 25018 36516 36516 0.012236251847525637 RAYIKLAPG 9 Unmodified _RAYIKLAPG_ 0 0 0 REV__ENST00000467894.5_1_1:33790468-33797238:-|nuORF REV__ENST00000467894.5_1_1:33790468-33797238:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.0084228515625 3 330.202793 987.58655 -0.3496 -0.00011544 0.39378 0.00013003 0.044184 1.459E-05 330.2029206013183 37.964 0.56318 37.964 37.577 38.14 0 23 15 2 0 0 0 0.8825 1 7022 7022 1.0715 0.67075 1 1916900 + 37130 16222 25003 25019 36517 36517 0.09226056922409498 RAYIKLAPG 9 Unmodified _RAYIKLAPG_ 0 0 0 REV__ENST00000467894.5_1_1:33790468-33797238:-|nuORF REV__ENST00000467894.5_1_1:33790468-33797238:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 330.202793 987.58655 -0.013228 -4.368E-06 -0.12312 -4.0655E-05 -0.13635 -4.5023E-05 330.202713832577 40.496 0.42692 37.956 37.815 38.242 -2.5398 0.011511 -0.00050628 NaN 1.0715 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1658600 + 37131 16222 25003 25019 0.09226056922409498 RAYIKLAPG 9 Unmodified _RAYIKLAPG_ 0 0 0 REV__ENST00000467894.5_1_1:33790468-33797238:-|nuORF REV__ENST00000467894.5_1_1:33790468-33797238:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 330.202793 987.58655 -0.59226 -0.00019556 0.7275 0.00024022 0.13524 4.4657E-05 330.2029557838958 40.403 0.56719 37.913 37.685 38.252 -2.4896 -0.031329 0.00033635 NaN 1.0715 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1610100 + 37132 16222 25003 25019 0.09226056922409498 RAYVAPTTT 9 Unmodified _RAYVAPTTT_ 0 0 0 REV__ENSG00000168928|ENST00000303037|CTRB2 REV__ENSG00000168928|ENST00000303037|CTRB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2579345703125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 81.568 1 77.88 77.38 78.38 -3.6879 0 0 0 0.18755 1 15545 15545 1.2148 0 1 + 37133 18068 25004 25020 36518 36518 0.02332883409110309 RCAGSDKL 8 Unmodified _RCAGSDKL_ 0 0 0 REV__POLQ|p.K1304Lfs*11|1|0.06|ENSG00000051341|chr3:121489022-121489023|-/GAAGGAGT|frameshift_variant REV__POLQ|p.K1304Lfs*11|1|0.06|ENSG00000051341|chr3:121489022-121489023|-/GAAGGAGT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2456359863281 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 53.982 1 50.847 50.347 51.347 -3.1352 0 0 0 0.20896 1 9947 9947 18.135 1.1927 1 + 37134 14087 25005 25021 36519 36519 -0.012835877026191156 RCAHETART 9 Unmodified _RCAHETART_ 0 0 0 REV__ENST00000577848.1_1_18:3653927-3654745:+|nuORF REV__ENST00000577848.1_1_18:3653927-3654745:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 348.814697265625 3 348.838297 1043.49306 NaN NaN NaN NaN NaN NaN NaN 126.71 1 122.01 121.51 122.51 -4.6998 0 0 0 0.19692 1 24375 24375 2.6312 0 1 + 37135 23220 25006 25022 36520 36520 -0.02694610522326002 RCCCCAAC 8 Unmodified _RCCCCAAC_ 0 0 0 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 832.24169921875 1 832.239102 831.231826 0.35495 0.0002954 -0.2043 -0.00017003 0.15065 0.00012538 832.24096692345 11.461 0.65941 11.461 11.059 11.719 0 38 18 3 0 0 0 8448 2 1489 1489;1491 0 0 1 274040 + 37136 16995 25007 25023 36521;36522 36521 -0.19054096081254102 RCCCCAAC 8 Unmodified _RCCCCAAC_ 0 0 0 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 832.7429809570312 1 832.239102 831.231826 0.35495 0.0002954 -0.2043 -0.00017003 0.15065 0.00012538 832.24096692345 11.461 0.65941 11.461 11.059 11.719 0 38 18 3 0 0 0 0.9003 1 1533 1533 0 0 1 274040 + 37137 16995 25007 25023 36523 36523 -0.19054096081254102 RCCCCAAC 8 Unmodified _RCCCCAAC_ 0 0 0 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 832.7366333007812 1 832.239102 831.231826 0.67537 0.00056207 -2.3434 -0.0019503 -1.668 -0.0013882 832.240581801984 179.03 1.9142 174.25 173.28 175.19 -4.7898 165 54 4 0 0 0 0.9003 1 36699 36699 0 0 1 636160 + 37138 16995 25007 25023 36524 36524 -0.19054096081254102 RCCCCAAC 8 Unmodified _RCCCCAAC_ 0 0 0 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 835.2396850585938 1 832.239102 831.231826 -1.4382 -0.0011969 -0.0072564 -6.0391E-06 -1.4454 -0.0012029 832.2423555731419 6.4786 0.82649 5.4638 4.8642 5.6906 -1.0148 49 22 4 0 0 0 0.89856 1 458 458 0 0 1 721100 + 37139 16995 25007 25023 36525 36525 -0.19054096081254102 RCCCCAAC 8 Unmodified _RCCCCAAC_ 0 0 0 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 832.239102 831.231826 -0.43885 -0.00036522 1.7152 0.0014275 1.2764 0.0010622 832.2413845210277 6.4216 1.1684 5.377 5.0564 6.2248 -1.0446 -0.043401 0.00021881 NaN 0 44 33 2 NaN NaN NaN NaN 0 NaN NaN 0 258930 + 37140 16995 25007 25023 -0.19054096081254102 RCCCCAAC 8 Unmodified _RCCCCAAC_ 0 0 0 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 832.239102 831.231826 0.69112 0.00057518 -0.34516 -0.00028726 0.34596 0.00028792 832.2407001215314 178.77 1.5592 173.86 173.54 175.1 -4.9088 -0.19325 0.00084217 NaN 0 118 44 3 NaN NaN NaN NaN 0 NaN NaN 0 995170 + 37141 16995 25007 25023 -0.19054096081254102 RCCCCAAC 8 Unmodified _RCCCCAAC_ 0 0 0 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 REV__nc|ENSG00000149043|Q8NBV8-1|SYT8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 832.239102 831.231826 -1.4382 -0.0011969 -0.0072564 -6.0391E-06 -1.4454 -0.0012029 832.2423555731419 6.4786 0.82649 5.4638 4.8642 5.6906 -1.0148 0.043401 -0.0012147 NaN 0 49 22 4 NaN NaN NaN NaN 0 NaN NaN 0 721100 + 37142 16995 25007 25023 -0.19054096081254102 RCCVRCCCCC 10 Unmodified _RCCVRCCCCC_ 0 0 0 REV__ENSG00000157765|ENST00000382051|SLC34A2 REV__ENSG00000157765|ENST00000382051|SLC34A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.317138671875 2 576.180022 1150.34549 NaN NaN NaN NaN NaN NaN NaN 152.12 1 152.12 151.62 152.62 0 0 0 0 2.8426 1 30468 30468 0.13989 0.13261 1 + 37143 17308 25008 25024 36526 36526 -0.22366692302148294 RCDTVYRKY 9 Unmodified _RCDTVYRKY_ 0 0 0 nc|ENSG00000106336|O75426-3|FBXO24;ENST00000488079.1_1_7:100189300-100192029:+|nuORF;nc|ENSG00000106336|O75426-2|FBXO24;FBXO24|p.L345Wfs*45|1|0.29|ENSG00000106336|chr7:100595178-100595178|C/-|frameshift_variant;nc|ENSG00000106336|O75426-4|FBXO24;ENSG00000106336|ENST00000241071|FBXO24 nc|ENSG00000106336|O75426-3|FBXO24 nc|ENSG00000106336|O75426-3|FBXO24 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.28857421875 2 602.30059 1202.58663 1.9478 0.0011731 0.46509 0.00028013 2.4129 0.0014533 602.3007974791542 24.157 0.59908 22.604 22.285 22.884 -1.5532 50 16 4 0 0 0 0.85111 1 4139 4139 10.824 10.824 1 12103000 37144 12276 25009 25025 36527 36527 -0.006563111399145782 RCELTPLKY 9 Unmodified _RCELTPLKY_ 0 0 0 ENST00000489825.5_1_1:224607181-224612368:-|nuORF;ENST00000486652.5_1_1:224601027-224612368:-|nuORF;ENST00000443112.6_1_1:224601027-224621705:-|nuORF;WDR26|p.H354Qfs*7|1|0.07|ENSG00000162923|chr1:224411523-224411524|-/AAGGGGATAATTT|frameshift_variant;WDR26|p.M441Nfs*6|1|0.46|ENSG00000162923|chr1:224401047-224401048|-/T|frameshift_variant;nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26 ENST00000489825.5_1_1:224607181-224612368:-|nuORF ENST00000489825.5_1_1:224607181-224612368:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.205078125 3 374.870715 1121.59032 0.029997 1.1245E-05 -0.061609 -2.3095E-05 -0.031612 -1.185E-05 374.87040713751696 39.261 0.37896 36.819 36.582 36.961 -2.4419 14 10 2 0 0 0 0.72996 1 7032 7032 4.897 0 1 381590 37145 5382 25010 25026 36528 36528 0.0343835863395725 RCELTPLKY 9 Unmodified _RCELTPLKY_ 0 0 0 ENST00000489825.5_1_1:224607181-224612368:-|nuORF;ENST00000486652.5_1_1:224601027-224612368:-|nuORF;ENST00000443112.6_1_1:224601027-224621705:-|nuORF;WDR26|p.H354Qfs*7|1|0.07|ENSG00000162923|chr1:224411523-224411524|-/AAGGGGATAATTT|frameshift_variant;WDR26|p.M441Nfs*6|1|0.46|ENSG00000162923|chr1:224401047-224401048|-/T|frameshift_variant;nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26 ENST00000489825.5_1_1:224607181-224612368:-|nuORF ENST00000489825.5_1_1:224607181-224612368:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.870715 1121.59032 -0.51867 -0.00019443 0.23428 8.7823E-05 -0.2844 -0.00010661 374.87070747653564 39.428 0.56678 36.879 36.606 37.172 -2.5491 0.029771 0.00014196 NaN 4.897 18 15 2 NaN NaN NaN NaN 0 NaN NaN 0 616200 37146 5382 25010 25026 0.0343835863395725 RCENKYREY 9 Unmodified _RCENKYREY_ 0 0 0 REV__NCOA5|p.T426Pfs*19|2|0.24|ENSG00000124160|chr20:46062765-46062765|G/-|frameshift_variant REV__NCOA5|p.T426Pfs*19|2|0.24|ENSG00000124160|chr20:46062765-46062765|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7734985351562 2 630.793129 1259.5717 NaN NaN NaN NaN NaN NaN NaN 169.2 1 164.41 163.91 164.91 -4.7898 0 0 0 0.19646 1 34258 34258 0.073264 0 1 + 37147 15753 25011 25027 36529 36529 -0.04769803007889095 RCFRCCMPY 9 Unmodified _RCFRCCMPY_ 0 0 0 REV__ENST00000519716.6_1_19:17712688-17712913:-|nuORF REV__ENST00000519716.6_1_19:17712688-17712913:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.267822265625 2 589.739942 1177.46533 0.34487 0.00020338 1.8902 0.0011147 2.2351 0.0013181 589.7421456497108 132.81 0.56442 132.81 132.47 133.04 0 20 13 2 0 0 0 0.46598 1 26301 26301 0.87518 0 1 4203200 + 37148 22622 25012 25028 36530 36530 -0.11630296370071846 RCGGGCCG 8 Unmodified _RCGGGCCG_ 0 0 0 REV__ENST00000229340.9_1_12:120533179-120533533:-|nuORF REV__ENST00000229340.9_1_12:120533179-120533533:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 714.231689453125 1 712.232361 711.225084 -1.3994 -0.00099667 1.8674 0.00133 0.46801 0.00033333 712.2356856242478 7.0077 1.6803 5.9929 5.7247 7.4049 -1.0148 83 47 3 0 0 0 0.89856 1 546 546 0 0 1 259910 + 37149 20061 25013 25029 36531 36531 -0.1420794964593597 RCGGGCCG 8 Unmodified _RCGGGCCG_ 0 0 0 REV__ENST00000229340.9_1_12:120533179-120533533:-|nuORF REV__ENST00000229340.9_1_12:120533179-120533533:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 712.7459106445312 1 712.232361 711.225084 -1.3994 -0.00099667 1.8674 0.00133 0.46801 0.00033333 712.2356856242478 7.0077 1.6803 5.9929 5.7247 7.4049 -1.0148 83 47 3 0 0 0 0.9003 1 781 781 0 0 1 259910 + 37150 20061 25013 25029 36532 36532 -0.1420794964593597 RCGGGCCG 8 Unmodified _RCGGGCCG_ 0 0 0 REV__ENST00000229340.9_1_12:120533179-120533533:-|nuORF REV__ENST00000229340.9_1_12:120533179-120533533:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 712.7333374023438 1 712.232361 711.225084 -1.3993 -0.00099661 1.9873 0.0014154 0.588 0.00041879 712.2357691184776 11.282 1.8748 10.216 9.0451 10.92 -1.0664 116 53 3 0 0 0 0.9003 1 1115 1115 0 0 1 969270 + 37151 20061 25013 25029 36533 36533 -0.1420794964593597 RCHDAAKK 8 Unmodified _RCHDAAKK_ 0 0 0 REV__ENST00000529970.5_1_11:120278459-120348246:+|nuORF REV__ENST00000529970.5_1_11:120278459-120348246:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16461181640625 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 119.11 1 119.11 118.61 119.61 0 0 0 0 0.21486 1 23466 23466 5.7319 1.7875 1 + 37152 13109 25014 25030 36534 36534 0.0042320979990790875 RCLHLVPP 8 Unmodified _RCLHLVPP_ 0 0 0 ENST00000484749.5_1_1:228360905-228363211:+|nuORF ENST00000484749.5_1_1:228360905-228363211:+|nuORF ENST00000484749.5_1_1:228360905-228363211:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1800231933594 3 312.181224 933.521842 NaN NaN NaN NaN NaN NaN NaN 116.09 1 111.73 111.23 112.23 -4.3585 0 0 0 0.21486 1 22350 22350 0.45834 0 1 37153 10433 25015 25031 36535 36535 0.052421588447714385 RCLSERDIR 9 Unmodified _RCLSERDIR_ 0 0 0 REV__nc|ENSG00000118946|O14917-2|PCDH17 REV__nc|ENSG00000118946|O14917-2|PCDH17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.2070617675781 3 383.204868 1146.59277 NaN NaN NaN NaN NaN NaN NaN 102.8 1 98.778 98.278 99.278 -4.0212 0 0 0 0.21768 1 19761 19761 18.373 3.1246 1 + 37154 15566 25016 25032 36536 36536 0.02534207091616736 RCLYPRAA 8 Unmodified _RCLYPRAA_ 0 0 0 ENST00000228495.10_1_12:109898499-109898577:-|nuORF ENST00000228495.10_1_12:109898499-109898577:-|nuORF ENST00000228495.10_1_12:109898499-109898577:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1751403808594 3 317.172728 948.496355 NaN NaN NaN NaN NaN NaN NaN 176.36 1 171.49 170.99 171.99 -4.8739 0 0 0 0.21486 1 35081 35081 0.40072 0 1 37155 8147 25017 25033 36537 36537 0.020046843223326505 RCNLALSRY 9 Unmodified _RCNLALSRY_ 0 0 0 ENSG00000180447|ENST00000298743|GAS1 ENSG00000180447|ENST00000298743|GAS1 ENSG00000180447|ENST00000298743|GAS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.772216796875 2 548.290025 1094.5655 0.18127 9.939E-05 1.085 0.0005949 1.2663 0.00069429 548.2889326440387 45.283 0.35699 42.493 42.348 42.705 -2.79 10 9 2 0 0 0 0.81703 1 8510 8510 14.838 9.0778 1 959430 37156 6675 25018 25034 36538 36538 0.02199723551234456 RCPCFCGCCC 10 Unmodified _RCPCFCGCCC_ 0 0 0 ENST00000496769.1_1_1:157670257-157670530:-|nuORF ENST00000496769.1_1_1:157670257-157670530:-|nuORF ENST00000496769.1_1_1:157670257-157670530:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7783203125 2 547.661989 1093.30942 NaN NaN NaN NaN NaN NaN NaN 14.173 1 12.963 12.463 13.463 -1.2106 0 0 0 0.22588 1 1856 1856 0 0 1 37157 10583 25019 25035 36539 36539 -0.23349826207368096 RCRGRPSLPQP 11 Unmodified _RCRGRPSLPQP_ 0 0 0 REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 423.5672912597656 3 422.899779 1265.67751 -0.078372 -3.3144E-05 -0.084364 -3.5677E-05 -0.16274 -6.8821E-05 422.89965289745254 135.04 0.711 130.21 129.82 130.53 -4.8245 32 19 2 0 0 0 0.60781 1 25999 25999 5.4027 1.5264 1 1246600 + 37158 20030 25020 25036 36540 36540 0.05529577628226434 RCRGRPSLPQP 11 Unmodified _RCRGRPSLPQP_ 0 0 0 REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 422.899779 1265.67751 0.087477 3.6994E-05 -0.37131 -0.00015703 -0.28384 -0.00012003 422.89955513331944 130.7 0.38998 130.7 130.51 130.9 0 0.33717 -0.00026481 NaN 5.4027 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1939000 + 37159 20030 25020 25036 0.05529577628226434 RCRGRPSLPQP 11 Unmodified _RCRGRPSLPQP_ 0 0 0 REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 422.899779 1265.67751 -0.15241 -6.4454E-05 0.087998 3.7214E-05 -0.064411 -2.7239E-05 423.234330036163 134.98 0.67204 130.34 130.02 130.69 -4.6399 -0.02176 0.00031792 NaN 5.4027 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1410000 + 37160 20030 25020 25036 0.05529577628226434 RCRGRPSLPQP 11 Unmodified _RCRGRPSLPQP_ 0 0 0 REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 422.899779 1265.67751 0.023871 1.0095E-05 -0.29774 -0.00012591 -0.27387 -0.00011582 422.89954348424516 135.1 0.6263 130.2 129.87 130.5 -4.8951 -0.16301 -0.00017147 NaN 5.4027 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1964600 + 37161 20030 25020 25036 0.05529577628226434 RCRGRPSLPQP 11 Unmodified _RCRGRPSLPQP_ 0 0 0 REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 422.899779 1265.67751 -0.078372 -3.3144E-05 -0.084364 -3.5677E-05 -0.16274 -6.8821E-05 422.89965289745254 135.04 0.711 130.21 129.82 130.53 -4.8245 -0.1524 9.9241E-05 NaN 5.4027 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1246600 + 37162 20030 25020 25036 0.05529577628226434 RCRRRRRRFVV 11 Unmodified _RCRRRRRRFVV_ 0 0 0 ENST00000583932.1_1_17:56065528-56065615:-|nuORF ENST00000583932.1_1_17:56065528-56065615:-|nuORF ENST00000583932.1_1_17:56065528-56065615:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 520.650390625 3 520.651533 1558.93277 NaN NaN NaN NaN NaN NaN NaN 173.9 1 169.02 168.52 169.52 -4.8845 0 0 0 0.22632 1 34537 34537 0.026206 0 1 37163 11518 25021 25037 36541 36541 0.17565903606941902 RCSFGSHW 8 Unmodified _RCSFGSHW_ 0 0 0 chr12:56315242-56315878|378|13.01|0.0|20.31|-|2|CNPY2,None|1;ENST00000549318.5_3_12:56709003-56709707:-|nuORF chr12:56315242-56315878|378|13.01|0.0|20.31|-|2|CNPY2,None|1 chr12:56315242-56315878|378|13.01|0.0|20.31|-|2|CNPY2,None|1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.0560302734375 2 490.213786 978.413019 NaN NaN NaN NaN NaN NaN NaN 4.7117 1 3.6718 3.1718 4.1718 -1.04 0 0 0 0.21486 1 141 141 2.5775 1.7838 1 37164 536 25022 25038 36542 36542 -0.07705052125504608 RCSTGGAGG 9 Unmodified _RCSTGGAGG_ 0 0 0 ENST00000339142.6_2_17:77020258-77030443:+|nuORF;ENST00000582295.1_1_17:77020258-77021030:+|nuORF;ENST00000580454.5_2_17:77019075-77040120:+|nuORF;ENST00000579760.5_2_17:77020159-77040120:+|nuORF ENST00000339142.6_2_17:77020258-77030443:+|nuORF ENST00000339142.6_2_17:77020258-77030443:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 383.167724609375 2 383.169044 764.323536 NaN NaN NaN NaN NaN NaN NaN 72.745 1 69.118 68.618 69.618 -3.6275 0 0 0 0.19646 1 13742 13742 0.029283 0.021006 1 37165 8836 25023 25039 36543 36543 -0.06805306804869815 RCTTRSCS 8 Unmodified _RCTTRSCS_ 0 0 0 ENST00000319394.7_1_1:27608763-27614192:+|nuORF ENST00000319394.7_1_1:27608763-27614192:+|nuORF ENST00000319394.7_1_1:27608763-27614192:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.13714599609375 3 305.137466 912.390569 NaN NaN NaN NaN NaN NaN NaN 82.445 1 82.445 81.945 82.945 0 0 0 0 0.21486 1 16063 16063 0.40072 0 1 37166 8700 25024 25040 36544 36544 -0.06913019585431357 RCVCCEFEY 9 Unmodified _RCVCCEFEY_ 0 0 0 REV__nc|ENSG00000112511|O43189-2|PHF1 REV__nc|ENSG00000112511|O43189-2|PHF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3192749023438 2 576.219562 1150.42457 NaN NaN NaN NaN NaN NaN NaN 75.965 1 72.331 71.831 72.831 -3.6337 0 0 0 0.19451 1 14451 14451 1.2148 0.80657 1 + 37167 15301 25025 25041 36545 36545 -0.1446235920871004 RDAVQLNVI 9 Unmodified _RDAVQLNVI_ 0 0 0 ENST00000524933.1_1_11:13716477-13732426:+|nuORF;ENSG00000197601|ENST00000354817|FAR1 ENST00000524933.1_1_11:13716477-13732426:+|nuORF ENST00000524933.1_1_11:13716477-13732426:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.21099853515625 3 343.201341 1026.58219 NaN NaN NaN NaN NaN NaN NaN 80.189 1 80.189 79.689 80.689 0 0 0 0 0.23508 1 15613 15613 2.4985 0 1 37168 7384 25026 25042 36546 36546 0.0699654770885445 RDCAWWFGDS 10 Unmodified _RDCAWWFGDS_ 0 0 0 REV__nc|ENSG00000284762|O95263-2|PDE8B REV__nc|ENSG00000284762|O95263-2|PDE8B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7587280273438 2 621.753472 1241.49239 2.1289 0.0013237 0.072068 4.4809E-05 2.201 0.0013685 621.7534470471059 25.451 0.41966 23.803 23.58 24 -1.6482 26 11 3 0 0 0 0.52224 1 4453 4453 0.043787 0 1 1641800 + 37169 15330 25027 25043 36547 36547 -0.11869449962023282 RDDEDGDDGDD 11 Unmodified _RDDEDGDDGDD_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant;ENST00000518145.1_1_8:103358389-103359193:-|nuORF nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 612.2000732421875 2 612.200175 1222.3858 NaN NaN NaN NaN NaN NaN NaN 7.3527 1 7.3527 6.8527 7.8527 0 0 0 0 0.23698 1 663 663 0 0 1 37170 2240 25028 25044 36548 36548 -0.21649998504176438 RDEDFMMH 8 Unmodified _RDEDFMMH_ 0 0 0 REV__ENSG00000165197|ENST00000297904|VEGFD REV__ENSG00000165197|ENST00000297904|VEGFD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.15362548828125 3 360.81276 1079.41645 -0.48962 -0.00017666 1.3033 0.00047024 0.81366 0.00029358 360.81318282636596 94.038 0.51646 94.038 93.829 94.346 0 23 14 2 0 0 0 0.89225 1 18452 18452 6.2058 1.3088 1 2416600 + 37171 17746 25029 25045 36549 36549 -0.12008170133822205 RDEFLMNVQ 9 Unmodified _RDEFLMNVQ_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant;ENST00000467219.5_1_12:124265674-124298205:+|nuORF;nc|ENSG00000197653|Q8IVF4-2|DNAH10;DNAH10|p.P1206Lfs*12|1|0.08|ENSG00000197653|chr12:123819219-123819219|C/-|frameshift_variant;DNAH10|p.E1360*|1|0.18|ENSG00000197653|chr12:123830579-123830580|-/T|frameshift_variant;DNAH10|p.K1737Nfs*15|2|0.42|ENSG00000197653|chr12:123845799-123845799|A/-|frameshift_variant;DNAH10|p.L299Nfs*4|1|0.07|ENSG00000197653|chr12:123784024-123784025|-/AA|frameshift_variant;DNAH10|p.P300Sfs*22|1|0.06|ENSG00000197653|chr12:123784026-123784027|-/CTCATCA|frameshift_variant;DNAH10|p.D498Tfs*15|1|0.18|ENSG00000197653|chr12:123789977-123789977|G/-|frameshift_variant;DNAH10|p.M516Wfs*4|1|0.11|ENSG00000197653|chr12:123790030-123790030|C/-|frameshift_variant nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3261108398438 2 576.279323 1150.54409 NaN NaN NaN NaN NaN NaN NaN 153.58 1 153.58 153.08 154.08 0 0 0 0 0.23508 1 30774 30774 6.7232 0.51738 1 37172 7388 25030 25046 36550 36550 -0.0251570626812736 RDEKCFLLLKE 11 Unmodified _RDEKCFLLLKE_ 0 0 0 REV__nc|ENSG00000258659|Q9BYJ4-2|TRIM34 REV__nc|ENSG00000258659|Q9BYJ4-2|TRIM34 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25390625 3 465.255117 1392.74352 NaN NaN NaN NaN NaN NaN NaN 102.44 1 98.255 97.755 98.755 -4.1861 0 0 0 0.22632 1 20134 20134 10.016 4.6136 1 + 37173 19876 25031 25047 36551 36551 0.06285928959755438 RDEQYKKQ 8 Unmodified _RDEQYKKQ_ 0 0 0 REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1 REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78271484375 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 177.98 1 173.19 172.69 173.69 -4.7898 0 0 0 0.21486 1 36410 36410 2.3027 0.24298 1 + 37174 25248 25032 25048 36552 36552 0.008587693238041538 RDEYSATIK 9 Unmodified _RDEYSATIK_ 0 0 0 REV__ENSG00000158769|ENST00000368026|F11R REV__ENSG00000158769|ENST00000368026|F11R MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.0260009765625 3 361.520739 1081.54039 -1.1205 -0.00040507 1.4031 0.00050726 0.28268 0.00010219 361.5212199098898 23.34 0.5847 21.551 21.292 21.876 -1.7886 53 16 5 0 0 0 0.80521 1 3737 3737 4.1895 1.691 1 23098000 + 37175 17345 25033 25049 36553 36553 0.0028794722966267727 RDEYSATIK 9 Unmodified _RDEYSATIK_ 0 0 0 REV__ENSG00000158769|ENST00000368026|F11R REV__ENSG00000158769|ENST00000368026|F11R MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 361.520739 1081.54039 -0.23827 -8.6139E-05 0.66696 0.00024112 0.42869 0.00015498 361.520953819676 21.585 0.68042 21.585 21.194 21.875 0 0.09883 -0.00024843 NaN 4.1895 56 19 5 NaN NaN NaN NaN 0 NaN NaN 0 29723000 + 37176 17345 25033 25049 0.0028794722966267727 RDEYSATIK 9 Unmodified _RDEYSATIK_ 0 0 0 REV__ENSG00000158769|ENST00000368026|F11R REV__ENSG00000158769|ENST00000368026|F11R MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 361.520739 1081.54039 0.44924 0.00016241 0.64414 0.00023287 1.0934 0.00039528 361.5210793822726 22.875 0.17179 21.321 21.166 21.338 -1.5532 -0.16437 -0.00027318 NaN 4.1895 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 129410 + 37177 17345 25033 25049 0.0028794722966267727 RDFATLKE 8 Unmodified _RDFATLKE_ 0 0 0 REV__nc|ENSG00000289750|Q9H1K0-2|RBSN REV__nc|ENSG00000289750|Q9H1K0-2|RBSN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2642822265625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 84.31 1 84.31 83.81 84.81 0 0 0 0 0.22757 1 16440 16440 0.68139 0.054566 1 + 37178 16071 25034 25050 36554 36554 0.023328834091330464 RDFATLKE 8 Unmodified _RDFATLKE_ 0 0 0 REV__nc|ENSG00000289750|Q9H1K0-2|RBSN REV__nc|ENSG00000289750|Q9H1K0-2|RBSN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2637634277344 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 90.469 1 90.469 89.969 90.969 0 0 0 0 0.22757 1 17671 17671 0.68139 0.42991 1 + 37179 16071 25034 25050 36555 36555 0.023328834091330464 RDFATLKE 8 Unmodified _RDFATLKE_ 0 0 0 REV__nc|ENSG00000289750|Q9H1K0-2|RBSN REV__nc|ENSG00000289750|Q9H1K0-2|RBSN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2645263671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 94.174 1 94.174 93.674 94.674 0 0 0 0 0.22665 1 18439 18439 0.25148 0 1 + 37180 16071 25034 25050 36556 36556 0.023328834091330464 RDFATLKE 8 Unmodified _RDFATLKE_ 0 0 0 REV__nc|ENSG00000289750|Q9H1K0-2|RBSN REV__nc|ENSG00000289750|Q9H1K0-2|RBSN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2652893066406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 68.708 1 65.318 64.818 65.818 -3.3903 0 0 0 0.2325 1 12978 12978 0.25148 0 1 + 37181 16071 25034 25050 36557 36557 0.023328834091330464 RDFATLKE 8 Unmodified _RDFATLKE_ 0 0 0 REV__nc|ENSG00000289750|Q9H1K0-2|RBSN REV__nc|ENSG00000289750|Q9H1K0-2|RBSN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26385498046875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 88.386 1 84.636 84.136 85.136 -3.7501 0 0 0 0.22757 1 16917 16917 0.25148 0 1 + 37182 16071 25034 25050 36558 36558 0.023328834091330464 RDFRIINVPD 10 Unmodified _RDFRIINVPD_ 0 0 0 ENST00000510722.1_1_5:52379261-52382834:+|nuORF ENST00000510722.1_1_5:52379261-52382834:+|nuORF ENST00000510722.1_1_5:52379261-52382834:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7743530273438 2 622.840936 1243.66732 NaN NaN NaN NaN NaN NaN NaN 163.1 1 157.92 157.42 158.42 -5.1878 0 0 0 0.22588 1 31718 31718 8.7454 0 1 37183 10745 25035 25051 36559 36559 0.05523293174655919 RDHRGCEWW 9 Unmodified _RDHRGCEWW_ 0 0 0 REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7708129882812 2 622.772531 1243.53051 NaN NaN NaN NaN NaN NaN NaN 34.632 1 34.632 34.132 35.132 0 0 0 0 0.23508 1 6343 6343 1.8442 0.19162 1 + 37184 13404 25036 25052 36560 36560 -0.08151519256693973 RDHRGCEWW 9 Unmodified _RDHRGCEWW_ 0 0 0 REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7730712890625 2 622.772531 1243.53051 NaN NaN NaN NaN NaN NaN NaN 149.12 1 149.12 148.62 149.62 0 0 0 0 0.1963 1 29853 29853 0.0033805 0 1 + 37185 13404 25036 25052 36561 36561 -0.08151519256693973 RDLGDPPPP 9 Unmodified _RDLGDPPPP_ 0 0 0 REV__ENSG00000129038|ENST00000261921|LOXL1 REV__ENSG00000129038|ENST00000261921|LOXL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7868957519531 2 482.248349 962.482145 0.66394 0.00032018 -0.59588 -0.00028736 0.068062 3.2823E-05 482.248031548864 22.163 1.3544 20.689 20.266 21.621 -1.4742 68 38 2 0 0 0 0.42289 1 3784 3784 39.957 0 1 2644000 + 37186 15945 25037 25053 36562 36562 -0.0005968962495899177 RDLHSRFL 8 Unmodified _RDLHSRFL_ 0 0 0 REV__nc|ENSG00000205268|Q13946-3|PDE7A REV__nc|ENSG00000205268|Q13946-3|PDE7A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2649536132812 2 522.290882 1042.56721 NaN NaN NaN NaN NaN NaN NaN 136.24 1 136.24 135.74 136.74 0 0 0 0 0.20618 1 26993 26993 20.454 8.8133 1 + 37187 19583 25038 25054 36563 36563 0.04763100631521411 RDNLGLPG 8 Unmodified _RDNLGLPG_ 0 0 0 REV__HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant REV__HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 421.2271728515625 2 421.229959 840.445365 NaN NaN NaN NaN NaN NaN NaN 44.927 1 42.093 41.593 42.593 -2.8345 0 0 0 0.21486 1 8147 8147 5.2307 0 1 + 37188 14895 25039 25055 36564 36564 0.018760585491349957 RDPLLFTT 8 Unmodified _RDPLLFTT_ 0 0 0 REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7669677734375 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 167.1 1 167.1 166.6 167.6 0 0 0 0 0.20462 1 34126 34126 21.747 0 1 + 37189 23950 25040 25056 36565 36565 0.04098071414500737 RDPTAITIG 9 Unmodified _RDPTAITIG_ 0 0 0 REV__ADAP1|p.V328A|1|0.41|ENSG00000105963|chr7:899146-899146|A/G|missense_variant REV__ADAP1|p.V328A|1|0.41|ENSG00000105963|chr7:899146-899146|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1995544433594 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 82.15 1 82.15 81.65 82.65 0 0 0 0 0.23508 1 16005 16005 2.4985 0 1 + 37190 12950 25041 25057 36566 36566 0.039888834091470926 RDQLVRVILWF 11 Unmodified _RDQLVRVILWF_ 0 0 0 REV__SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant REV__SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 482.45452880859375 3 482.285628 1443.83505 NaN NaN NaN NaN NaN NaN NaN 147.52 1 142.81 142.31 143.31 -4.7095 0 0 0 0.22632 1 29272 29272 0.172 0 1 + 37191 19397 25042 25058 36567 36567 0.13088980439260922 RDQRRRLNIMF 11 Unmodified _RDQRRRLNIMF_ 0 0 0 REV__ENSG00000130309|ENST00000252599|COLGALT1 REV__ENSG00000130309|ENST00000252599|COLGALT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 502.2809753417969 3 502.280771 1503.82048 NaN NaN NaN NaN NaN NaN NaN 136.55 1 136.55 136.05 137.05 0 0 0 0 0.22632 1 27062 27062 1.4551 0 1 + 37192 15996 25043 25059 36568 36568 0.08872585019480539 RDRLVFLHS 9 Unmodified _RDRLVFLHS_ 0 0 0 CAPN9|p.G366Afs*15|1|0.38|ENSG00000135773|chr1:230779112-230779112|G/-|frameshift_variant;nc|ENSG00000135773|O14815-2|CAPN9;ENSG00000135773|ENST00000271971|CAPN9 CAPN9|p.G366Afs*15|1|0.38|ENSG00000135773|chr1:230779112-230779112|G/-|frameshift_variant CAPN9|p.G366Afs*15|1|0.38|ENSG00000135773|chr1:230779112-230779112|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2108154296875 3 381.552485 1141.63563 -0.40255 -0.00015359 1.0007 0.00038181 0.59812 0.00022821 381.5527522429512 28.048 0.4518 26.051 25.894 26.346 -1.9962 17 12 2 0 0 0 0.86693 1 4700 4700 6.6304 0.43853 1 375560 37193 386 25044 25060 36569 36569 0.07047345211367428 RDRRLYIRCYR 11 Unmodified _RDRRLYIRCYR_ 0 0 0 nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;ENST00000471025.1_1_3:39170643-39171861:+|nuORF nc|ENSG00000168026|Q8NDW8-6|TTC21A nc|ENSG00000168026|Q8NDW8-6|TTC21A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3775634765625 2 785.430793 1568.84703 NaN NaN NaN NaN NaN NaN NaN 175.14 1 170.25 169.75 170.75 -4.8845 0 0 0 0.23698 1 34820 34820 2.4985 0 1 37194 5870 25045 25061 36570 36570 0.08536273910794989 RDRRRPRRAR 10 Unmodified _RDRRRPRRAR_ 0 0 0 REV__ENST00000530151.5_1_11:47586908-47587052:-|nuORF REV__ENST00000530151.5_1_11:47586908-47587052:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25341796875 3 465.618997 1393.83516 -0.016719 -7.7847E-06 -1.9038 -0.00088645 -1.9205 -0.00089424 465.61804857236876 84.496 0.13773 80.784 80.664 80.802 -3.7117 5 3 2 0 0 0 1.1313 1 16136 16136 3.8763 0.80407 1 399640 + 37195 22752 25046 25062 36571 36571 0.15399838002485922 RDRWEPEREP 10 Unmodified _RDRWEPEREP_ 0 0 0 REV__ENST00000486758.5_1_4:77631429-77663226:+|nuORF REV__ENST00000486758.5_1_4:77631429-77663226:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2272644042969 3 457.225097 1368.65346 -0.21313 -9.7448E-05 0.063692 2.9121E-05 -0.14944 -6.8326E-05 457.2251372829481 18.087 0.4206 16.776 16.547 16.967 -1.3109 37 11 5 0 0 0 0.75212 1 2926 2926 5.0475 0.93089 1 11286000 + 37196 16489 25047 25063 36572 36572 -0.016119843244496224 RDRWEPEREP 10 Unmodified _RDRWEPEREP_ 0 0 0 REV__ENST00000486758.5_1_4:77631429-77663226:+|nuORF REV__ENST00000486758.5_1_4:77631429-77663226:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 457.225097 1368.65346 -0.21313 -9.7448E-05 0.063692 2.9121E-05 -0.14944 -6.8326E-05 457.2251372829481 18.087 0.4206 16.776 16.547 16.967 -1.3109 0.077882 0.00010506 NaN 5.0475 37 11 5 NaN NaN NaN NaN 0 NaN NaN 0 11286000 + 37197 16489 25047 25063 -0.016119843244496224 RDRWEPEREP 10 Unmodified _RDRWEPEREP_ 0 0 0 REV__ENST00000486758.5_1_4:77631429-77663226:+|nuORF REV__ENST00000486758.5_1_4:77631429-77663226:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 457.225097 1368.65346 -0.45991 -0.00021028 0.22335 0.00010212 -0.23656 -0.00010816 457.22507981700426 17.984 0.71303 16.712 16.283 16.996 -1.2722 0.013329 0.00032406 NaN 5.0475 45 20 4 NaN NaN NaN NaN 0 NaN NaN 0 8836000 + 37198 16489 25047 25063 -0.016119843244496224 RDRYPMEDY 9 Unmodified _RDRYPMEDY_ 0 0 0 CHST15|p.V310M|1|0.09|ENSG00000182022|chr10:124042406-124042406|C/T|missense_variant CHST15|p.V310M|1|0.09|ENSG00000182022|chr10:124042406-124042406|C/T|missense_variant CHST15|p.V310M|1|0.09|ENSG00000182022|chr10:124042406-124042406|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7719116210938 2 622.771862 1243.52917 NaN NaN NaN NaN NaN NaN NaN 40.193 1 37.703 37.203 38.203 -2.4896 0 0 0 0.19622 1 7188 7188 0.96228 0 1 37199 556 25048 25064 36573 36573 -0.08285198136127292 RDSLEVSV 8 Unmodified _RDSLEVSV_ 0 0 0 nc|ENSG00000141497|Q9H091-2|ZMYND15;ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15 nc|ENSG00000141497|Q9H091-2|ZMYND15 nc|ENSG00000141497|Q9H091-2|ZMYND15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7478332519531 2 452.740357 903.46616 0.24394 0.00011044 -0.45518 -0.00020608 -0.21123 -9.5633E-05 452.74024880015475 72.153 2.3013 68.525 66.79 69.091 -3.6275 161 64 6 0 0 0 0.73936 1 13385 13385 8.5933 0 1 37985000 37200 4373 25049 25065 36574 36574 0.010566041381480318 RDSYHHYFYDY 11 Unmodified _RDSYHHYFYDY_ 0 0 0 nc|ENSG00000204053|P12525|MYCLP1 nc|ENSG00000204053|P12525|MYCLP1 nc|ENSG00000204053|P12525|MYCLP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2805786132812 3 522.55299 1564.63714 -0.10743 -5.6138E-05 -1.3671 -0.00071437 -1.4745 -0.00077051 522.8870144694303 59.912 0.10889 59.912 59.821 59.93 0 4 2 2 0 0 0 0.96218 1 11476 11476 1.2148 1.12 1 1091700 37201 12557 25050 25066 36575 36575 -0.12259110281183894 RDTDIGSKLV 10 Unmodified _RDTDIGSKLV_ 0 0 0 ENSG00000140323|ENST00000267889|DISP2 ENSG00000140323|ENST00000267889|DISP2 ENSG00000140323|ENST00000267889|DISP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 552.3042602539062 2 552.306395 1102.59824 NaN NaN NaN NaN NaN NaN NaN 167.64 1 162.85 162.35 163.35 -4.7898 0 0 0 0.22518 1 33836 33836 22.736 7.898 1 37202 4290 25051 25067 36576 36576 0.05104209155092576 RDVHRRRIWWY 11 Unmodified _RDVHRRRIWWY_ 0 0 0 ENST00000534399.5_1_1:41201396-41204544:+|nuORF ENST00000534399.5_1_1:41201396-41204544:+|nuORF ENST00000534399.5_1_1:41201396-41204544:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.780517578125 3 548.299042 1641.8753 0.32555 0.0001785 0.015161 8.3127E-06 0.34071 0.00018681 548.634341240756 126.6 0.17403 126.6 126.47 126.64 0 5 4 2 0 0 0 0.89126 1 24957 24957 0.03141 0 1 1143300 37203 11006 25052 25068 36577 36577 0.0800333988240709 RDVHRRRIWWY 11 Unmodified _RDVHRRRIWWY_ 0 0 0 ENST00000534399.5_1_1:41201396-41204544:+|nuORF ENST00000534399.5_1_1:41201396-41204544:+|nuORF ENST00000534399.5_1_1:41201396-41204544:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7896118164062 3 548.299042 1641.8753 0.35487 0.00019457 1.3505 0.00074045 1.7053 0.00093503 548.6328297054511 159.12 0.21254 154.33 154.23 154.44 -4.7952 6 5 2 0 0 0 0.96224 1 31622 31622 0.094841 0 1 918030 37204 11006 25052 25068 36578 36578 0.0800333988240709 RDVVVEST 8 Unmodified _RDVVVEST_ 0 0 0 REV__ENST00000519973.5_1_8:23429536-23429629:+|nuORF REV__ENST00000519973.5_1_8:23429536-23429629:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76434326171875 2 452.740357 903.46616 0.24394 0.00011044 -0.45518 -0.00020608 -0.21123 -9.5633E-05 452.74024880015475 72.153 2.3013 68.525 66.79 69.091 -3.6275 161 64 6 0 0 0 8448 1 13322 13322 0.063987 0 1 37985000 + 37205 22630 25053 25069 36579 36579 0.010566041381480318 RDWQWQVIEL 10 Unmodified _RDWQWQVIEL_ 0 0 0 REV__ENSG00000179002|ENST00000375371|TAS1R2 REV__ENSG00000179002|ENST00000375371|TAS1R2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2294616699219 3 458.238455 1371.69353 NaN NaN NaN NaN NaN NaN NaN 53.13 1 50.246 49.746 50.746 -2.8837 0 0 0 2.8426 1 10118 10118 3.8763 3.7043 1 + 37206 18632 25054 25070 36580 36580 0.022555623461357754 REAAAAPAY 9 Unmodified _REAAAAPAY_ 0 0 0 ENST00000520539.5_1_8:103424406-103424691:-|nuORF ENST00000520539.5_1_8:103424406-103424691:-|nuORF ENST00000520539.5_1_8:103424406-103424691:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353820800781 2 460.235242 918.45593 -0.083138 -3.8263E-05 0.47573 0.00021895 0.3926 0.00018069 460.2354240916621 44.341 0.7928 41.575 41.008 41.801 -2.7661 38 22 2 0 0 0 0.45972 1 8012 8012 8.1555 1.9497 1 1156800 37207 10836 25055 25071 36581 36581 -0.0065595879644888555 REAAFIDMD 9 Unmodified _REAAFIDMD_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0730285644531 3 356.499058 1066.47534 -0.23326 -8.3157E-05 0.3225 0.00011497 0.089234 3.1812E-05 356.49893661094177 23.854 0.17487 23.854 23.758 23.933 0 8 4 2 0 0 0 0.8606 1 4082 4082 10.8 0 1 314250 + 37208 14076 25056 25072 36582 36582 -0.05523370567834718 REAAPIPG 8 Unmodified _REAAPIPG_ 0 0 0 ENST00000397261.7_1_3:9834466-9834580:+|nuORF ENST00000397261.7_1_3:9834466-9834580:+|nuORF ENST00000397261.7_1_3:9834466-9834580:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 406.1883544921875 2 405.727052 809.439552 0.034216 1.3882E-05 0.36887 0.00014966 0.40309 0.00016354 405.7270055130837 53.242 0.63202 50.154 49.796 50.428 -3.0876 22 17 2 0 0 0 1.0011 1 9812 9812 12.532 7.7755 1 731480 37209 9461 25057 25073 36583 36583 0.02720960037459008 REAAPIPG 8 Unmodified _REAAPIPG_ 0 0 0 ENST00000397261.7_1_3:9834466-9834580:+|nuORF ENST00000397261.7_1_3:9834466-9834580:+|nuORF ENST00000397261.7_1_3:9834466-9834580:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 405.727052 809.439552 -0.39001 -0.00015824 0.46802 0.00018989 0.078013 3.1652E-05 405.7271757337782 53.006 0.728 50.122 49.657 50.385 -2.8837 -0.025453 -3.5073E-05 NaN 12.532 27 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1039500 37210 9461 25057 25073 0.02720960037459008 REAAPIPG 8 Unmodified _REAAPIPG_ 0 0 0 ENST00000397261.7_1_3:9834466-9834580:+|nuORF ENST00000397261.7_1_3:9834466-9834580:+|nuORF ENST00000397261.7_1_3:9834466-9834580:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 405.727052 809.439552 -0.52223 -0.00021188 0.65007 0.00026375 0.12784 5.1869E-05 405.7272204306018 53.262 0.78379 50.166 49.76 50.544 -3.0954 0.0188 0.00011266 NaN 12.532 30 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1000700 37211 9461 25057 25073 0.02720960037459008 REACPFHLP 9 Unmodified _REACPFHLP_ 0 0 0 nc|ENSG00000140481|Q8N5R6-2|CCDC33 nc|ENSG00000140481|Q8N5R6-2|CCDC33 nc|ENSG00000140481|Q8N5R6-2|CCDC33 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0730285644531 3 357.179771 1068.51748 0.91468 0.00032671 1.0403 0.00037156 1.9549 0.00069826 357.18024014286135 25.601 0.72826 23.953 23.511 24.239 -1.6482 42 20 3 0 0 0 0.77644 1 4542 4542 20.415 5.1661 1 2520000 37212 12356 25058 25074 36584 36584 -0.014033503687869597 READRRNM 8 Unmodified _READRRNM_ 0 0 0 REV__U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant REV__U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.1925048828125 3 349.84193 1046.50396 -0.84558 -0.00029582 1.0492 0.00036706 0.20365 7.1244E-05 349.8423196604721 25.135 0.92871 23.282 22.881 23.809 -1.8534 44 26 2 0 0 0 8448 1 4129 4129 14.838 8.6464 1 868470 + 37213 17605 25059 25075 36585 36585 -0.017432081480365014 REAEFTKSI 9 Unmodified _REAEFTKSI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27880859375 2 540.787838 1079.56112 0.54887 0.00029682 -0.1831 -9.902E-05 0.36577 0.0001978 540.7876355751099 43.524 0.65916 43.524 43.155 43.814 0 41 18 4 0 0 0 0.13797 1 8136 8136 65.474 15.541 1 5841700 37214 3030 25060 25076 36586 36586 0.024525376093151863 REAEFTKSI 9 Unmodified _REAEFTKSI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2782592773438 2 540.787838 1079.56112 0.17457 9.4403E-05 -0.011819 -6.3915E-06 0.16275 8.8011E-05 540.7877588818209 46.236 0.59018 43.395 43.102 43.693 -2.8409 36 16 3 0 0 0 0.22356 1 8757 8757 49.527 15.126 1 5333100 37215 3030 25060 25076 36587 36587 0.024525376093151863 REAEFTKSI 9 Unmodified _REAEFTKSI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2788696289062 2 540.787838 1079.56112 0.071017 3.8405E-05 0.5916 0.00031993 0.66262 0.00035833 540.7878960815311 46.322 0.62343 43.457 43.138 43.761 -2.8653 42 17 3 0 0 0 0.092401 1 8433 8433 78.06 26.431 1 3799100 37216 3030 25060 25076 36588 36588 0.024525376093151863 REAEFTKSI 9 Unmodified _REAEFTKSI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2801513671875 2 540.787838 1079.56112 -0.017694 -9.5688E-06 0.25656 0.00013875 0.23887 0.00012918 540.7878756860508 46.299 0.62232 43.433 43.131 43.753 -2.8666 43 17 3 0 0 0 0.10724 1 8407 8407 53.317 15.141 1 3384300 37217 3030 25060 25076 36589 36589 0.024525376093151863 REAEFTKSIA 10 Unmodified _REAEFTKSIA_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3342895507812 2 576.306395 1150.59824 0.49361 0.00028447 -0.47123 -0.00027157 0.022382 1.2899E-05 576.3062656579361 41.569 1.4388 41.569 41.232 42.671 0 136 40 5 0 0 0 0.016576 2 7721 7721;7900 98.73 56.417 1 520560000 37218 3030 25061 25077 36590;36591 36590 0.02896209155096585 REAEFTKSIA 10 Unmodified _REAEFTKSIA_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3320922851562 2 576.306395 1150.59824 -0.025393 -1.4634E-05 -0.072729 -4.1914E-05 -0.098123 -5.6549E-05 576.306460562696 44.341 1.7648 41.551 41.22 42.985 -2.79 165 49 6 0 0 0 0.0056997 3 8294 8294;8297;8529 114.54 107.85 1 489620000 37219 3030 25061 25077 36592;36593;36594 36592 0.02896209155096585 REAEFTKSIA 10 Unmodified _REAEFTKSIA_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3204345703125 2 576.306395 1150.59824 0.076966 4.4356E-05 -0.10694 -6.1628E-05 -0.02997 -1.7272E-05 576.3064531350261 44.361 1.7805 41.595 41.219 43 -2.7661 163 50 6 0 0 0 0.14114 2 8155 8155;8196 49.527 15.126 1 454520000 37220 3030 25061 25077 36595;36596 36595 0.02896209155096585 REAEFTKSIA 10 Unmodified _REAEFTKSIA_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3187866210938 2 576.306395 1150.59824 -0.074373 -4.2862E-05 0.057011 3.2856E-05 -0.017362 -1.0006E-05 576.3065812683702 44.333 1.8987 41.586 41.183 43.082 -2.7475 187 53 6 0 0 0 0.15354 3 8229 8229;8232;8279 32.518 18.113 1 378110000 37221 3030 25061 25077 36597;36598;36599 36597 0.02896209155096585 REAEFTKSIA 10 Unmodified _REAEFTKSIA_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 384.21282958984375 3 384.540022 1150.59824 -0.74192 -0.0002853 0.55044 0.00021167 -0.19148 -7.3633E-05 384.54063754733704 44.333 2.2018 41.586 41.183 43.385 -2.7475 217 62 6 0 0 0 0.96024 1 7979 7979 140.62 89.624 1 414300000 37222 3030 25061 25077 36600 36600 0.02896209155096585 REAEFTKSIA 10 Unmodified _REAEFTKSIA_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 384.540022 1150.59824 0.085364 3.2826E-05 -0.16587 -6.3784E-05 -0.080507 -3.0958E-05 384.5402869632342 41.565 1.6151 41.565 41.232 42.847 0 -0.0044431 -0.00026421 NaN 140.62 157 45 6 NaN NaN NaN NaN 0 NaN NaN 0 475510000 37223 3030 25061 25077 0.02896209155096585 REAEFTKSIA 10 Unmodified _REAEFTKSIA_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 384.540022 1150.59824 -0.25972 -9.9873E-05 0.044183 1.699E-05 -0.21554 -8.2883E-05 384.5403748095333 44.34 1.7626 41.55 41.186 42.949 -2.79 -0.020009 -2.189E-05 NaN 140.62 172 49 6 NaN NaN NaN NaN 0 NaN NaN 0 546550000 37224 3030 25061 25077 0.02896209155096585 REAEFTKSIA 10 Unmodified _REAEFTKSIA_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 384.540022 1150.59824 -0.036507 -1.4038E-05 -0.13125 -5.0472E-05 -0.16776 -6.4511E-05 384.54023435392617 44.345 1.9821 41.579 41.219 43.201 -2.7661 0.008727 -0.00022428 NaN 140.62 186 56 6 NaN NaN NaN NaN 0 NaN NaN 0 450270000 37225 3030 25061 25077 0.02896209155096585 REAEILHKA 9 Unmodified _REAEILHKA_ 0 0 0 ENSG00000104312|ENST00000220751|RIPK2 ENSG00000104312|ENST00000220751|RIPK2 ENSG00000104312|ENST00000220751|RIPK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2689208984375 2 533.803823 1065.59309 0.461 0.00024609 -0.17025 -9.0879E-05 0.29076 0.00015521 533.8037665464452 20.912 0.35554 19.438 19.276 19.632 -1.4742 14 9 2 0 0 0 0.47592 1 3525 3525 17.113 12.216 1 2066200 37226 2226 25062 25078 36601 36601 0.06291950083118536 REAEILHKA 9 Unmodified _REAEILHKA_ 0 0 0 ENSG00000104312|ENST00000220751|RIPK2 ENSG00000104312|ENST00000220751|RIPK2 ENSG00000104312|ENST00000220751|RIPK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.803823 1065.59309 0.07752 4.138E-05 0.51492 0.00027487 0.59244 0.00031625 533.8040794094235 19.431 0.34593 19.431 19.208 19.554 0 0.010759 0.00037951 NaN 17.113 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2927800 37227 2226 25062 25078 0.06291950083118536 REAEILHKA 9 Unmodified _REAEILHKA_ 0 0 0 ENSG00000104312|ENST00000220751|RIPK2 ENSG00000104312|ENST00000220751|RIPK2 ENSG00000104312|ENST00000220751|RIPK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 533.803823 1065.59309 0.13282 7.0902E-05 0.22583 0.00012055 0.35865 0.00019145 533.8039925303572 20.777 0.34165 19.392 19.236 19.578 -1.3847 -0.027999 7.0868E-05 NaN 17.113 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2236000 37228 2226 25062 25078 0.06291950083118536 REAELPPEQ 9 Unmodified _REAELPPEQ_ 0 0 0 REV__ENSG00000109265|ENST00000682029|CRACD REV__ENSG00000109265|ENST00000682029|CRACD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.04962158203125 3 356.848856 1067.52474 -0.21279 -7.5936E-05 -0.10921 -3.897E-05 -0.322 -0.00011491 356.84893145781473 25.028 0.3768 25.028 24.879 25.256 0 13 10 2 0 0 0 0.8606 1 4348 4348 10.8 0 1 478310 + 37229 15158 25063 25079 36602 36602 -0.006323392874037381 REAELPPEQ 9 Unmodified _REAELPPEQ_ 0 0 0 REV__ENSG00000109265|ENST00000682029|CRACD REV__ENSG00000109265|ENST00000682029|CRACD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 356.848856 1067.52474 0.77538 0.00027669 -1.7907 -0.000639 -1.0153 -0.00036231 356.8481209419106 26.696 0.40474 24.914 24.726 25.13 -1.7821 -0.061433 -0.0014781 NaN 10.8 17 11 3 NaN NaN NaN NaN 0 NaN NaN 0 470710 + 37230 15158 25063 25079 -0.006323392874037381 REAELPPEQ 9 Unmodified _REAELPPEQ_ 0 0 0 REV__ENSG00000109265|ENST00000682029|CRACD REV__ENSG00000109265|ENST00000682029|CRACD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 356.848856 1067.52474 0.16003 5.7108E-05 -0.5474 -0.00019534 -0.38737 -0.00013823 356.848754441389 26.618 0.25084 24.983 24.856 25.107 -1.6347 0.0083017 -0.00014712 NaN 10.8 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 684040 + 37231 15158 25063 25079 -0.006323392874037381 REAERAVTH 9 Unmodified _REAERAVTH_ 0 0 0 nc|ENSG00000080298|P48380-2|RFX3 nc|ENSG00000080298|P48380-2|RFX3 nc|ENSG00000080298|P48380-2|RFX3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0494384765625 3 356.856345 1067.5472 -0.19734 -7.0422E-05 -2.9743 -0.0010614 -3.1716 -0.0011318 357.1883821341762 26.037 0.85841 26.037 25.843 26.702 0 34 24 2 0 0 0 0.82357 1 4527 4527 10.8 5.0677 1 1012900 37232 12240 25064 25080 36603 36603 0.01613304900888579 REAFTDLK 8 Unmodified _REAFTDLK_ 0 0 0 PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant;PARPBP|p.N533Mfs*19|1|0.15|ENSG00000185480|chr12:102196145-102196145|A/-|frameshift_variant;ENSG00000185480|ENST00000327680|PARPBP;PARPBP|p.G278Vfs*6|1|0.35|ENSG00000185480|chr12:102175490-102175490|G/-|frameshift_variant;nc|ENSG00000185480|Q9NWS1-7|PARPBP;nc|ENSG00000185480|Q9NWS1-2|PARPBP;nc|ENSG00000185480|Q9NWS1-6|PARPBP PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant;nc|ENSG00000185480|Q9NWS1-6|PARPBP PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2642517089844 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 55.796 1 52.62 52.12 53.12 -3.1761 0 0 0 0.23312 1 10367 10367 6.2058 0 1 37233 6994;12512 25065 25081 36604 36604 0.02332883409144415 REAFYQLNY 9 Unmodified _REAFYQLNY_ 0 0 0 REV__nc|ENSG00000110675|Q8N336-3|ELMOD1 REV__nc|ENSG00000110675|Q8N336-3|ELMOD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2938842773438 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 149.93 1 145.2 144.7 145.7 -4.7323 0 0 0 0.22621 1 29775 29775 15.847 5.0233 1 + 37234 15208 25066 25082 36605 36605 -0.021160600163739218 REAGAAPGPGP 11 Unmodified _REAGAAPGPGP_ 0 0 0 ENST00000550925.2_1_12:111856500-111882553:+|nuORF ENST00000550925.2_1_12:111856500-111882553:+|nuORF ENST00000550925.2_1_12:111856500-111882553:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25250244140625 2 490.251423 978.488293 NaN NaN NaN NaN NaN NaN NaN 26.663 1 25.028 24.528 25.528 -1.6347 0 0 0 0.20277 1 4432 4432 18.146 3.3081 1 37235 11176 25067 25083 36606 36606 -0.001811713934330328 REAGAGPEEM 10 Unmodified _REAGAGPEEM_ 0 0 0 BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant;BCL9|p.P971Hfs*11|2|0.26|ENSG00000116128|chr1:147622275-147622275|C/-|frameshift_variant;BCL9|p.P1111Lfs*3|1|0.39|ENSG00000116128|chr1:147624005-147624005|G/-|frameshift_variant;BCL9|p.Q1162Rfs*115|2|0.28|ENSG00000116128|chr1:147624156-147624156|G/-|frameshift_variant;BCL9|p.Q1139Rfs*138|1|0.37|ENSG00000116128|chr1:147624089-147624089|C/-|frameshift_variant;ENSG00000116128|ENST00000234739|BCL9 BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.16412353515625 3 349.490563 1045.44986 0.15133 5.289E-05 0.40412 0.00014124 0.55545 0.00019413 349.4906737034104 62.832 0.63496 59.416 59.085 59.72 -3.4158 34 17 3 0 0 0 1.1036 1 11726 11726 19.362 9.288 1 4314500 37236 310 25068 25084 36607 36607 -0.07104845090248091 REAGAGPEEM 10 Unmodified _REAGAGPEEM_ 0 0 0 BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant;BCL9|p.P971Hfs*11|2|0.26|ENSG00000116128|chr1:147622275-147622275|C/-|frameshift_variant;BCL9|p.P1111Lfs*3|1|0.39|ENSG00000116128|chr1:147624005-147624005|G/-|frameshift_variant;BCL9|p.Q1162Rfs*115|2|0.28|ENSG00000116128|chr1:147624156-147624156|G/-|frameshift_variant;BCL9|p.Q1139Rfs*138|1|0.37|ENSG00000116128|chr1:147624089-147624089|C/-|frameshift_variant;ENSG00000116128|ENST00000234739|BCL9 BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 349.490563 1045.44986 -0.61322 -0.00021431 1.2361 0.000432 0.62286 0.00021769 349.4909779229991 59.621 0.57452 59.621 59.284 59.859 0 0.13695 0.00041245 NaN 19.362 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2941800 37237 310 25068 25084 -0.07104845090248091 REAGAGPEEM 10 Unmodified _REAGAGPEEM_ 0 0 0 BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant;BCL9|p.P971Hfs*11|2|0.26|ENSG00000116128|chr1:147622275-147622275|C/-|frameshift_variant;BCL9|p.P1111Lfs*3|1|0.39|ENSG00000116128|chr1:147624005-147624005|G/-|frameshift_variant;BCL9|p.Q1162Rfs*115|2|0.28|ENSG00000116128|chr1:147624156-147624156|G/-|frameshift_variant;BCL9|p.Q1139Rfs*138|1|0.37|ENSG00000116128|chr1:147624089-147624089|C/-|frameshift_variant;ENSG00000116128|ENST00000234739|BCL9 BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 349.490563 1045.44986 -0.20853 -7.2878E-05 0.74321 0.00025974 0.53468 0.00018687 349.4908053380778 62.414 0.6632 59.452 59.111 59.775 -2.9614 -0.032173 -0.00010431 NaN 19.362 50 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3285200 37238 310 25068 25084 -0.07104845090248091 REAGAGPEEM 10 Unmodified _REAGAGPEEM_ 0 0 0 BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant;BCL9|p.P971Hfs*11|2|0.26|ENSG00000116128|chr1:147622275-147622275|C/-|frameshift_variant;BCL9|p.P1111Lfs*3|1|0.39|ENSG00000116128|chr1:147624005-147624005|G/-|frameshift_variant;BCL9|p.Q1162Rfs*115|2|0.28|ENSG00000116128|chr1:147624156-147624156|G/-|frameshift_variant;BCL9|p.Q1139Rfs*138|1|0.37|ENSG00000116128|chr1:147624089-147624089|C/-|frameshift_variant;ENSG00000116128|ENST00000234739|BCL9 BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 349.490563 1045.44986 -0.45685 -0.00015967 1.0418 0.0003641 0.58496 0.00020444 349.4908549056491 62.688 0.5872 59.448 59.139 59.727 -3.2395 -0.036459 0.00020877 NaN 19.362 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2409600 37239 310 25068 25084 -0.07104845090248091 REAKLRKVA 9 Unmodified _REAKLRKVA_ 0 0 0 REV__nc|ENSG00000133961|P49757-7|NUMB REV__nc|ENSG00000133961|P49757-7|NUMB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5635986328125 3 357.564614 1069.67201 NaN NaN NaN NaN NaN NaN NaN 111.84 1 107.41 106.91 107.91 -4.4231 0 0 0 0.23508 1 22039 22039 1.9064 0 1 + 37240 16184 25069 25085 36608 36608 0.13996222108062284 REAKVERPS 9 Unmodified _REAKVERPS_ 0 0 0 nc|nan|Q9H425-2|C1orf198;nc|nan|Q9H425-3|C1orf198;ENSG00000119280|ENST00000366663|C1orf198 nc|nan|Q9H425-2|C1orf198 nc|nan|Q9H425-2|C1orf198 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.55181884765625 3 357.868362 1070.58326 -0.21453 -7.6772E-05 0.27097 9.6973E-05 0.05645 2.0202E-05 357.8683572949502 24.502 0.47855 24.502 24.302 24.781 0 22 13 3 0 0 0 0.83265 1 4201 4201 14.405 4.8614 1 1374400 37241 3064 25070 25086 36609 36609 0.050787620777555276 REAKVERPS 9 Unmodified _REAKVERPS_ 0 0 0 nc|nan|Q9H425-2|C1orf198;nc|nan|Q9H425-3|C1orf198;ENSG00000119280|ENST00000366663|C1orf198 nc|nan|Q9H425-2|C1orf198 nc|nan|Q9H425-2|C1orf198 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.868362 1070.58326 0.86852 0.00031082 -0.72459 -0.00025931 0.14393 5.1508E-05 357.8680754545449 26.155 0.41132 24.372 24.071 24.483 -1.7821 -0.05107 -0.00067514 NaN 14.405 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 754390 37242 3064 25070 25086 0.050787620777555276 REAKVERPS 9 Unmodified _REAKVERPS_ 0 0 0 nc|nan|Q9H425-2|C1orf198;nc|nan|Q9H425-3|C1orf198;ENSG00000119280|ENST00000366663|C1orf198 nc|nan|Q9H425-2|C1orf198 nc|nan|Q9H425-2|C1orf198 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 357.868362 1070.58326 0.12035 4.3068E-05 0.048127 1.7223E-05 0.16847 6.0291E-05 357.86830155723186 26.03 0.41945 24.396 24.128 24.548 -1.6347 -0.027891 0.00015446 NaN 14.405 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 962900 37243 3064 25070 25086 0.050787620777555276 REAPALPLP 9 Unmodified _REAPALPLP_ 0 0 0 ENST00000534885.5_1_12:6450992-6451268:-|nuORF ENST00000534885.5_1_12:6450992-6451268:-|nuORF ENST00000534885.5_1_12:6450992-6451268:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.768798828125 2 482.284734 962.554916 0.29088 0.00014029 -0.17227 -8.3085E-05 0.11861 5.7204E-05 482.2846215455106 121.5 2.0612 116.95 115.86 117.92 -4.5476 192 57 5 0 0 0 0.036636 1 23910 23910 88.954 14.531 1 78128000 37244 11010 25071 25087 36610 36610 0.07214064168454115 REAPALPLP 9 Unmodified _REAPALPLP_ 0 0 0 ENST00000534885.5_1_12:6450992-6451268:-|nuORF ENST00000534885.5_1_12:6450992-6451268:-|nuORF ENST00000534885.5_1_12:6450992-6451268:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7690734863281 2 482.284734 962.554916 0.61625 0.00029721 -0.44477 -0.00021451 0.17147 8.2699E-05 482.2844549222285 121.59 2.1223 116.9 115.86 117.98 -4.6873 185 60 4 0 0 0 0.034725 1 23302 23302 82.529 0 1 68325000 37245 11010 25071 25087 36611 36611 0.07214064168454115 REAPALPLP 9 Unmodified _REAPALPLP_ 0 0 0 ENST00000534885.5_1_12:6450992-6451268:-|nuORF ENST00000534885.5_1_12:6450992-6451268:-|nuORF ENST00000534885.5_1_12:6450992-6451268:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7708740234375 2 482.284734 962.554916 0.24137 0.00011641 -0.087783 -4.2336E-05 0.15359 7.4075E-05 482.28462798454615 121.48 2.4037 116.95 115.89 118.29 -4.5305 194 66 4 0 0 0 0.036636 1 23331 23331 69.105 0 1 76060000 37246 11010 25071 25087 36612 36612 0.07214064168454115 REAPDQAWCRE 11 Unmodified _REAPDQAWCRE_ 0 0 0 REV__nc|ENSG00000159899|P20594-2|NPR2 REV__nc|ENSG00000159899|P20594-2|NPR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.756591796875 3 454.206937 1359.59898 NaN NaN NaN NaN NaN NaN NaN 78.62 1 78.62 78.12 79.12 0 0 0 0 0.22632 1 15300 15300 0.026206 0.024825 1 + 37247 17385 25072 25088 36613 36613 -0.06643319467548281 REAPDQAWCRE 11 Unmodified _REAPDQAWCRE_ 0 0 0 REV__nc|ENSG00000159899|P20594-2|NPR2 REV__nc|ENSG00000159899|P20594-2|NPR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7645568847656 3 454.206937 1359.59898 NaN NaN NaN NaN NaN NaN NaN 67.041 1 63.932 63.432 64.432 -3.1086 0 0 0 0.22632 1 13000 13000 0.026206 0.024825 1 + 37248 17385 25072 25088 36614 36614 -0.06643319467548281 REAPGMALA 9 Unmodified _REAPGMALA_ 0 0 0 GPHN|p.P192Lfs*44|1|0.2|ENSG00000171723|chr14:66922780-66922780|C/-|frameshift_variant;GPHN|p.E468Nfs*21|1|0.39|ENSG00000171723|chr14:67113043-67113043|G/-|frameshift_variant;nc|ENSG00000171723|Q9NQX3|GPHN;ENSG00000171723|ENST00000478722|GPHN GPHN|p.P192Lfs*44|1|0.2|ENSG00000171723|chr14:66922780-66922780|C/-|frameshift_variant GPHN|p.P192Lfs*44|1|0.2|ENSG00000171723|chr14:66922780-66922780|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23095703125 2 458.23947 914.464386 0.024247 1.1111E-05 -0.42062 -0.00019275 -0.39638 -0.00018164 458.239188393989 57.937 1.0569 54.685 54.009 55.066 -3.2517 34 29 2 0 0 0 0.35556 1 10767 10767 17.572 14.929 1 737860 37249 6161 25073 25089 36615 36615 0.003732718485252917 REAPPVVPP 9 Unmodified _REAPPVVPP_ 0 0 0 nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1;ENST00000465029.5_1_2:111419157-111435602:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant;BUB1|p.P355T|1|0.34|ENSG00000169679|chr2:110661736-110661736|G/T|missense_variant nc|ENSG00000169679|O43683-2|BUB1 nc|ENSG00000169679|O43683-2|BUB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.778564453125 2 481.276909 960.539266 0.12047 5.7979E-05 0.047624 2.292E-05 0.16809 8.0899E-05 481.27687248266113 60.892 2.1052 57.523 56.391 58.497 -3.3694 85 59 2 0 0 0 0.54076 1 11255 11255 17.113 1.2657 1 1455300 37250 5997 25074 25090 36616 36616 0.05741777651417124 REAQFGTTA 9 Unmodified _REAQFGTTA_ 0 0 0 ENST00000491834.5_1_3:3197887-3221343:-|nuORF;CRBN|p.Q297Lfs*6|1|0.04|ENSG00000113851|chr3:3154021-3154022|-/CTGTATA|frameshift_variant;nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN;ENST00000492178.1_1_3:3214458-3216930:-|nuORF;ENST00000498700.5_1_3:3214275-3221371:-|nuORF ENST00000491834.5_1_3:3197887-3221343:-|nuORF ENST00000491834.5_1_3:3197887-3221343:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2547607421875 2 490.743431 979.472308 0.72778 0.00035715 -0.71196 -0.00034939 0.015819 7.7632E-06 490.74309193292913 29.447 0.77721 27.491 27.154 27.932 -1.9561 67 21 5 0 0 0 0.50419 1 5356 5356 19.362 1.227 1 73666000 37251 723 25075 25091 36617 36617 -0.018248776303494196 REAQFGTTA 9 Unmodified _REAQFGTTA_ 0 0 0 ENST00000491834.5_1_3:3197887-3221343:-|nuORF;CRBN|p.Q297Lfs*6|1|0.04|ENSG00000113851|chr3:3154021-3154022|-/CTGTATA|frameshift_variant;nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN;ENST00000492178.1_1_3:3214458-3216930:-|nuORF;ENST00000498700.5_1_3:3214275-3221371:-|nuORF ENST00000491834.5_1_3:3197887-3221343:-|nuORF ENST00000491834.5_1_3:3197887-3221343:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2533264160156 2 490.743431 979.472308 0.41243 0.0002024 -0.34957 -0.00017155 0.062853 3.0845E-05 490.7432497831736 29.311 1.0831 27.418 27.051 28.134 -1.8928 87 30 5 0 0 0 0.035659 1 4998 4998 93.166 14.438 1 72307000 37252 723 25075 25091 36618 36618 -0.018248776303494196 REAQFGTTA 9 Unmodified _REAQFGTTA_ 0 0 0 ENST00000491834.5_1_3:3197887-3221343:-|nuORF;CRBN|p.Q297Lfs*6|1|0.04|ENSG00000113851|chr3:3154021-3154022|-/CTGTATA|frameshift_variant;nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN;ENST00000492178.1_1_3:3214458-3216930:-|nuORF;ENST00000498700.5_1_3:3214275-3221371:-|nuORF ENST00000491834.5_1_3:3197887-3221343:-|nuORF ENST00000491834.5_1_3:3197887-3221343:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25689697265625 2 490.743431 979.472308 0.23761 0.00011661 -0.19705 -9.6699E-05 0.040566 1.9908E-05 490.74331549599987 29.439 1.2579 27.365 27.033 28.291 -2.0743 92 35 5 0 0 0 0.37645 1 4974 4974 45.74 21.066 1 61175000 37253 723 25075 25091 36619 36619 -0.018248776303494196 REARLAEHS 9 Unmodified _REARLAEHS_ 0 0 0 REV__ENST00000598987.5_1_19:14640495-14655933:+|nuORF REV__ENST00000598987.5_1_19:14640495-14655933:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.04962158203125 3 356.856345 1067.5472 -0.21107 -7.5322E-05 -1.0909 -0.0003893 -1.302 -0.00046462 356.85768354909317 25.257 0.71014 25.257 24.681 25.391 0 30 20 2 0 0 0 0.8606 1 4348 4348 10.8 0 1 371770 + 37254 23399 25076 25092 36620 36620 0.01613304900888579 REASLLKVY 9 Unmodified _REASLLKVY_ 0 0 0 REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2132263183594 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 53.966 1 50.87 50.37 51.37 -3.0954 0 0 0 0.23508 1 9976 9976 7.1017 1.3699 1 + 37255 19886 25077 25093 36621 36621 0.08254004885725408 RECERWYRERD 11 Unmodified _RECERWYRERD_ 0 0 0 REV__nc|ENSG00000119596|P49750-3|YLPM1 REV__nc|ENSG00000119596|P49750-3|YLPM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2739868164062 3 533.247795 1596.72156 NaN NaN NaN NaN NaN NaN NaN 149.91 1 149.91 149.41 150.41 0 0 0 0 0.22632 1 30009 30009 0.50596 0.47975 1 + 37256 15584 25078 25094 36622 36622 -0.052934827360786585 RECYTHNG 8 Unmodified _RECYTHNG_ 0 0 0 ENSG00000230268|ENST00000473520|SSU72L6 ENSG00000230268|ENST00000473520|SSU72L6 ENSG00000230268|ENST00000473520|SSU72L6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 327.1415100097656 3 327.139864 978.397763 NaN NaN NaN NaN NaN NaN NaN 179.46 1 174.59 174.09 175.09 -4.868 0 0 0 0.21486 1 35749 35749 0.40072 0.16487 1 37257 7804 25079 25095 36623 36623 -0.09229963713357847 REDDRVAIHEA 11 Unmodified _REDDRVAIHEA_ 0 0 0 ENST00000493076.5_1_22:35806581-35817581:+|nuORF;ENSG00000100297|ENST00000216122|MCM5 ENST00000493076.5_1_22:35806581-35817581:+|nuORF ENST00000493076.5_1_22:35806581-35817581:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2171936035156 3 437.553102 1309.63748 0.18745 8.2021E-05 -0.40282 -0.00017626 -0.21537 -9.4234E-05 437.5529347414265 23.25 0.62837 23.25 22.96 23.589 0 59 17 6 0 0 0 0.087644 1 3978 3978 75.986 63.131 1 23801000 37258 1949 25080 25096 36624 36624 -0.0049569056131986144 REDDRVAIHEA 11 Unmodified _REDDRVAIHEA_ 0 0 0 ENST00000493076.5_1_22:35806581-35817581:+|nuORF;ENSG00000100297|ENST00000216122|MCM5 ENST00000493076.5_1_22:35806581-35817581:+|nuORF ENST00000493076.5_1_22:35806581-35817581:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 437.553102 1309.63748 -0.003669 -1.6054E-06 -0.17295 -7.5676E-05 -0.17662 -7.7281E-05 437.55302077819067 24.748 0.65442 23.214 22.955 23.609 -1.5342 -0.017706 0.00019181 NaN 75.986 64 18 5 NaN NaN NaN NaN 0 NaN NaN 0 30278000 37259 1949 25080 25096 -0.0049569056131986144 REDHDKRRHLA 11 Unmodified _REDHDKRRHLA_ 0 0 0 BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72283935546875 3 478.25539 1431.74434 -0.65099 -0.00031134 1.0066 0.00048142 0.35562 0.00017008 478.2557216549282 12.118 0.17316 11.108 11.033 11.206 -1.0098 5 4 2 0 0 0 0.96031 1 1657 1657 7.4291 4.9943 1 326540 37260 327 25081 25097 36625 36625 0.045739044437141274 REDHDKRRHLA 11 Unmodified _REDHDKRRHLA_ 0 0 0 BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73284912109375 3 478.25539 1431.74434 -0.68172 -0.00032604 -0.064801 -3.0992E-05 -0.74652 -0.00035703 478.58965498735506 12.087 0.10608 10.958 10.869 10.976 -1.1293 4 2 2 0 0 0 0.89134 1 1466 1466 0.094841 0.094841 1 327850 37261 327 25081 25097 36626 36626 0.045739044437141274 REDLQAVV 8 Unmodified _REDLQAVV_ 0 0 0 JAKMIP1|p.A761V|1|0.26|ENSG00000152969|chr4:6036001-6036001|G/A|missense_variant JAKMIP1|p.A761V|1|0.26|ENSG00000152969|chr4:6036001-6036001|G/A|missense_variant JAKMIP1|p.A761V|1|0.26|ENSG00000152969|chr4:6036001-6036001|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2562255859375 2 465.256174 928.497795 0.41972 0.00019528 -0.45895 -0.00021353 -0.039232 -1.8253E-05 465.255921268426 44.77 0.66988 44.77 44.459 45.129 0 34 18 2 0 0 0 0.40222 1 8371 8371 32.305 1.6689 1 7942800 37262 11969 25082 25098 36627 36627 0.030685968920806772 REDQKEEWGP 10 Unmodified _REDQKEEWGP_ 0 0 0 REV__nc|ENSG00000069869|P46934-3|NEDD4 REV__nc|ENSG00000069869|P46934-3|NEDD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2491455078125 3 425.198436 1272.57348 -0.19534 -8.3058E-05 0.44083 0.00018744 0.24549 0.00010438 425.19859085748413 21.663 0.34934 20.279 20.143 20.492 -1.3847 16 9 2 0 0 0 0.91149 1 3447 3447 3.5871 2.1319 1 525170 + 37263 23946 25083 25099 36628 36628 -0.051904707182984566 REDQKEEWGP 10 Unmodified _REDQKEEWGP_ 0 0 0 REV__nc|ENSG00000069869|P46934-3|NEDD4 REV__nc|ENSG00000069869|P46934-3|NEDD4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 425.198436 1272.57348 0.076431 3.2498E-05 -0.028442 -1.2093E-05 0.047989 2.0405E-05 425.1984346524006 20.273 0.32242 20.273 20.1 20.423 0 -0.031341 -0.00015818 NaN 3.5871 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 641110 + 37264 23946 25083 25099 -0.051904707182984566 REDQKEEWGP 10 Unmodified _REDQKEEWGP_ 0 0 0 REV__nc|ENSG00000069869|P46934-3|NEDD4 REV__nc|ENSG00000069869|P46934-3|NEDD4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 425.198436 1272.57348 0.38161 0.00016226 -0.22366 -9.5098E-05 0.15796 6.7163E-05 425.198293525029 21.835 0.32395 20.361 20.195 20.519 -1.4742 0.056931 -0.00040719 NaN 3.5871 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 891710 + 37265 23946 25083 25099 -0.051904707182984566 REDRRPITV 9 Unmodified _REDRRPITV_ 0 0 0 ENST00000462245.1_1_9:126202450-126219642:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;DENND1A|p.P653Qfs*29|1|0.34|ENSG00000119522|chr9:123382504-123382504|G/-|frameshift_variant;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000479305.5_1_9:126200042-126224279:-|nuORF ENST00000462245.1_1_9:126202450-126219642:-|nuORF;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;ENST00000479305.5_1_9:126200042-126224279:-|nuORF ENST00000479305.5_1_9:126200042-126224279:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2105712890625 3 381.219395 1140.63635 0.77659 0.00029605 -0.13577 -5.176E-05 0.64081 0.00024429 381.21927808598093 27.072 0.31461 25.29 24.993 25.308 -1.7821 15 8 2 0 0 0 0.35556 3 4796 4763;4767;4796 12.241 4.0851 1 1532400 37266 10083;3081;10337 25084 25100 36629;36630;36631 36631 0.0716613986039647 REDRRPITV 9 Unmodified _REDRRPITV_ 0 0 0 ENST00000462245.1_1_9:126202450-126219642:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;DENND1A|p.P653Qfs*29|1|0.34|ENSG00000119522|chr9:123382504-123382504|G/-|frameshift_variant;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000479305.5_1_9:126200042-126224279:-|nuORF ENST00000462245.1_1_9:126202450-126219642:-|nuORF;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;ENST00000479305.5_1_9:126200042-126224279:-|nuORF ENST00000479305.5_1_9:126200042-126224279:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2198181152344 3 381.219395 1140.63635 -0.55422 -0.00021128 1.5887 0.00060563 1.0345 0.00039435 381.21992726070255 27.101 0.24199 25.179 24.984 25.226 -1.9222 11 6 2 0 0 0 0.54181 1 4501 4501 17.049 7.5046 1 966290 37267 10083;3081;10337 25084 25100 36632 36632 0.0716613986039647 REDRYWFWIRN 11 Unmodified _REDRYWFWIRN_ 0 0 0 ENST00000498642.5_1_1:19923574-19948639:+|nuORF ENST00000498642.5_1_1:19923574-19948639:+|nuORF ENST00000498642.5_1_1:19923574-19948639:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7786254882812 3 547.607541 1639.80079 NaN NaN NaN NaN NaN NaN NaN 13.765 1 12.555 12.055 13.055 -1.2106 0 0 0 0.23698 1 1769 1769 0.08335 0.08335 1 37268 10606 25085 25101 36633 36633 0.0064853228036554356 REDYKGLY 8 Unmodified _REDYKGLY_ 0 0 0 REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1 REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2703247070312 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 144.11 1 144.11 143.61 144.61 0 0 0 0 0.21486 1 28782 28782 10.824 1.4408 1 + 37269 25457 25086 25102 36634 36634 -0.011194204534604069 REEAAPEQ 8 Unmodified _REEAAPEQ_ 0 0 0 nc|ENSG00000148057|Q5T6J7-2|IDNK nc|ENSG00000148057|Q5T6J7-2|IDNK nc|ENSG00000148057|Q5T6J7-2|IDNK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2494812011719 2 465.219788 928.425024 NaN NaN NaN NaN NaN NaN NaN 101.04 1 101.04 100.54 101.54 0 0 0 0 0.23664 1 19825 19825 3.2813 2.6545 1 37270 12376 25087 25103 36635 36635 -0.0420515690133243 REEADGVYAA 10 Unmodified _REEADGVYAA_ 0 0 0 ENST00000464684.5_1_15:91434747-91438785:+|nuORF;nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES ENST00000464684.5_1_15:91434747-91438785:+|nuORF ENST00000464684.5_1_15:91434747-91438785:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2691650390625 2 540.751453 1079.48835 0.32294 0.00017463 0.19913 0.00010768 0.52207 0.00028231 540.7513372730568 30.368 0.46021 30.368 30.095 30.555 0 25 12 3 0 0 0 0.45334 1 5442 5442 27.223 0.33958 1 2302700 37271 6792 25088 25104 36636 36636 -0.04821216184109289 REEADGVYAA 10 Unmodified _REEADGVYAA_ 0 0 0 ENST00000464684.5_1_15:91434747-91438785:+|nuORF;nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES ENST00000464684.5_1_15:91434747-91438785:+|nuORF ENST00000464684.5_1_15:91434747-91438785:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.279541015625 2 540.751453 1079.48835 0.34244 0.00018518 0.35512 0.00019203 0.69757 0.00037721 540.751256287685 32.554 0.38921 30.324 30.117 30.507 -2.2305 24 10 3 0 0 0 0.25854 2 5911 5911;5961 19.362 18.147 1 1683600 37272 6792 25088 25104 36637;36638 36637 -0.04821216184109289 REEADGVYAA 10 Unmodified _REEADGVYAA_ 0 0 0 ENST00000464684.5_1_15:91434747-91438785:+|nuORF;nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES ENST00000464684.5_1_15:91434747-91438785:+|nuORF ENST00000464684.5_1_15:91434747-91438785:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26806640625 2 540.751453 1079.48835 0.53088 0.00028707 -0.446 -0.00024117 0.08488 4.5899E-05 540.7511710194531 32.468 0.48699 30.32 30.103 30.59 -2.1483 25 13 3 0 0 0 0.88798 1 5654 5654 13.615 6.3256 1 1215900 37273 6792 25088 25104 36639 36639 -0.04821216184109289 REEADGVYAA 10 Unmodified _REEADGVYAA_ 0 0 0 ENST00000464684.5_1_15:91434747-91438785:+|nuORF;nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES ENST00000464684.5_1_15:91434747-91438785:+|nuORF ENST00000464684.5_1_15:91434747-91438785:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.751453 1079.48835 0.32294 0.00017463 0.19913 0.00010768 0.52207 0.00028231 540.7513372730568 30.368 0.46021 30.368 30.095 30.555 0 0.02238 7.8977E-05 NaN 19.362 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2302700 37274 6792 25088 25104 -0.04821216184109289 REEADGVYAA 10 Unmodified _REEADGVYAA_ 0 0 0 ENST00000464684.5_1_15:91434747-91438785:+|nuORF;nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES ENST00000464684.5_1_15:91434747-91438785:+|nuORF ENST00000464684.5_1_15:91434747-91438785:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.751453 1079.48835 0.34385 0.00018594 0.76108 0.00041156 1.1049 0.00059749 540.7514604983897 32.397 0.4578 30.37 30.114 30.572 -2.0264 0.024851 0.00068674 NaN 19.362 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2060600 37275 6792 25088 25104 -0.04821216184109289 REEEEEEET 9 Unmodified _REEEEEEET_ 0 0 0 nc|ENSG00000124313|Q5JU85-4|IQSEC2 nc|ENSG00000124313|Q5JU85-4|IQSEC2 nc|ENSG00000124313|Q5JU85-4|IQSEC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2578735351562 2 590.236029 1178.45751 NaN NaN NaN NaN NaN NaN NaN 99.444 1 99.444 98.944 99.944 0 0 0 0 0.19636 1 19503 19503 2.4985 0 1 37276 12303 25089 25105 36640 36640 -0.12458459079675777 REEHKLAMA 9 Unmodified _REEHKLAMA_ 0 0 0 REV__nc|ENSG00000011451|O95785|WIZ REV__nc|ENSG00000011451|O95785|WIZ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 362.1997375488281 3 362.190447 1083.54951 -1.6288 -0.00058992 1.6892 0.0006118 0.060415 2.1882E-05 362.19089427806557 19.92 0.58935 18.284 17.946 18.535 -1.6351 24 16 3 0 0 0 0.5428 1 2989 2989 4.897 0 1 1082300 + 37277 13937 25090 25106 36641 36641 0.011080173143454886 REEHWKRRIFI 11 Unmodified _REEHWKRRIFI_ 0 0 0 REV__ENST00000473481.1_1_10:27066118-27112155:-|nuORF REV__ENST00000473481.1_1_10:27066118-27112155:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.39404296875 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 137.82 1 137.82 137.32 138.32 0 0 0 0 0.22632 1 27346 27346 1.4074 0.82212 1 + 37278 22073 25091 25107 36642 36642 0.10713401931025146 REEIFEESY 9 Unmodified _REEIFEESY_ 0 0 0 ENSG00000108854|ENST00000262435|SMURF2;ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1 ENSG00000108854|ENST00000262435|SMURF2 ENSG00000108854|ENST00000262435|SMURF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2760620117188 2 601.272218 1200.52988 0.29484 0.00017728 0.18277 0.0001099 0.47761 0.00028717 601.272241893522 87.908 0.65314 87.908 87.537 88.19 0 36 18 3 0 0 0 0.37634 2 17149 17128;17149 27.223 6.8087 1 5705300 37279 2500 25092 25108 36643;36644 36644 -0.0623608021542168 REEIFEESY 9 Unmodified _REEIFEESY_ 0 0 0 ENSG00000108854|ENST00000262435|SMURF2;ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1 ENSG00000108854|ENST00000262435|SMURF2 ENSG00000108854|ENST00000262435|SMURF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2752685546875 2 601.272218 1200.52988 0.96232 0.00057862 -0.15584 -9.3703E-05 0.80648 0.00048491 601.2719895056259 92.1 0.59176 88.175 87.923 88.515 -3.9251 39 16 3 0 0 0 0.33094 3 18025 18025;18072;18081 29.841 7.1043 1 6253400 37280 2500 25092 25108 36645;36646;36647 36645 -0.0623608021542168 REEIFEESY 9 Unmodified _REEIFEESY_ 0 0 0 ENSG00000108854|ENST00000262435|SMURF2;ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1 ENSG00000108854|ENST00000262435|SMURF2 ENSG00000108854|ENST00000262435|SMURF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2774658203125 2 601.272218 1200.52988 0.18555 0.00011157 0.89091 0.00053568 1.0765 0.00064724 601.2725361609071 91.978 0.68777 88.17 87.754 88.442 -3.8083 48 19 4 0 0 0 0.46882 1 17608 17608 21.537 0 1 4422500 37281 2500 25092 25108 36648 36648 -0.0623608021542168 REEIFEESY 9 Unmodified _REEIFEESY_ 0 0 0 ENSG00000108854|ENST00000262435|SMURF2;ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1 ENSG00000108854|ENST00000262435|SMURF2 ENSG00000108854|ENST00000262435|SMURF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 601.272218 1200.52988 0.63253 0.00038032 0.10793 6.4895E-05 0.74046 0.00044522 601.2721691913539 92.234 0.69466 88.14 87.808 88.503 -4.0946 0.041643 -0.00011073 NaN 29.841 40 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4698800 37282 2500 25092 25108 -0.0623608021542168 REENKMKKWRD 11 Unmodified _REENKMKKWRD_ 0 0 0 REV__nc|ENSG00000105856|O60381-3|HBP1 REV__nc|ENSG00000105856|O60381-3|HBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21832275390625 4 380.700409 1518.77253 -0.22 -8.3755E-05 1.6913 0.00064389 1.4713 0.00056013 381.20161172393676 16.193 0.24577 16.193 16.023 16.269 0 10 6 3 0 0 0 0.66234 1 2489 2489 0.50596 0 1 316910 + 37283 15020 25093 25109 36649 36649 0.03389466308749434 REENKMKKWRD 11 Unmodified _REENKMKKWRD_ 0 0 0 REV__nc|ENSG00000105856|O60381-3|HBP1 REV__nc|ENSG00000105856|O60381-3|HBP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 380.700409 1518.77253 -0.22 -8.3755E-05 1.6913 0.00064389 1.4713 0.00056013 381.20161172393676 16.193 0.24577 16.193 16.023 16.269 0 -0.068194 -0.00083792 NaN 0.50596 10 6 3 NaN NaN NaN NaN 0 NaN NaN 0 316910 + 37284 15020 25093 25109 0.03389466308749434 REENKMKKWRD 11 Unmodified _REENKMKKWRD_ 0 0 0 REV__nc|ENSG00000105856|O60381-3|HBP1 REV__nc|ENSG00000105856|O60381-3|HBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 380.700409 1518.77253 -0.41364 -0.00015747 2.3823 0.00090695 1.9687 0.00074947 380.70145000002566 17.64 0.30616 16.329 16.169 16.475 -1.3109 0.068194 0.00021431 NaN 0.50596 14 8 3 NaN NaN NaN NaN 0 NaN NaN 0 691560 + 37285 15020 25093 25109 0.03389466308749434 REEREDLP 8 Unmodified _REEREDLP_ 0 0 0 ACTL6B|p.G51Rfs*61|1|0.32|ENSG00000077080|chr7:100655539-100655540|-/C|frameshift_variant ACTL6B|p.G51Rfs*61|1|0.32|ENSG00000077080|chr7:100655539-100655540|-/C|frameshift_variant ACTL6B|p.G51Rfs*61|1|0.32|ENSG00000077080|chr7:100655539-100655540|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2611083984375 2 522.259445 1042.50434 0.20701 0.00010811 -0.13759 -7.1856E-05 0.069424 3.6257E-05 522.2595400602522 33.208 0.55374 33.208 32.92 33.474 0 18 15 2 0 0 0 0.49114 1 6015 6015 28.487 3.0875 1 800480 37286 42 25094 25110 36650 36650 -0.015215099471788562 REEREDLP 8 Unmodified _REEREDLP_ 0 0 0 ACTL6B|p.G51Rfs*61|1|0.32|ENSG00000077080|chr7:100655539-100655540|-/C|frameshift_variant ACTL6B|p.G51Rfs*61|1|0.32|ENSG00000077080|chr7:100655539-100655540|-/C|frameshift_variant ACTL6B|p.G51Rfs*61|1|0.32|ENSG00000077080|chr7:100655539-100655540|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2597045898438 2 522.259445 1042.50434 0.36688 0.00019161 -0.59463 -0.00031055 -0.22775 -0.00011894 522.2592817428671 35.56 0.76761 33.283 32.828 33.595 -2.2766 28 21 2 0 0 0 0.25515 1 6192 6192 39.957 11.47 1 693990 37287 42 25094 25110 36651 36651 -0.015215099471788562 REERMEECY 9 Unmodified _REERMEECY_ 0 0 0 REV__nc|ENSG00000116688|O95140-2|MFN2 REV__nc|ENSG00000116688|O95140-2|MFN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7562255859375 2 622.755355 1243.49616 NaN NaN NaN NaN NaN NaN NaN 9.2819 1 8.4877 7.9877 8.9877 -0.79424 0 0 0 0.23508 1 1057 1057 0.45834 0.057624 1 + 37288 15492 25095 25111 36652 36652 -0.11585148250446764 REERMEECY 9 Unmodified _REERMEECY_ 0 0 0 REV__nc|ENSG00000116688|O95140-2|MFN2 REV__nc|ENSG00000116688|O95140-2|MFN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.755615234375 2 622.755355 1243.49616 NaN NaN NaN NaN NaN NaN NaN 157.47 1 152.18 151.68 152.68 -5.2854 0 0 0 0.23508 1 30558 30558 7.9102 3.5809 1 + 37289 15492 25095 25111 36653 36653 -0.11585148250446764 REETKLAP 8 Unmodified _REETKLAP_ 0 0 0 REV__nc|ENSG00000100591|O95433-2|AHSA1 REV__nc|ENSG00000100591|O95433-2|AHSA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.3128356933594 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 142.64 1 137.75 137.25 138.25 -4.8982 0 0 0 0.21486 1 27525 27525 1.8442 0 1 + 37290 14721 25096 25112 36654 36654 0.03988883409124355 REEWRREELYR 11 Unmodified _REEWRREELYR_ 0 0 0 NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2766723632812 3 541.277972 1620.81209 NaN NaN NaN NaN NaN NaN NaN 12.111 1 10.982 10.482 11.482 -1.1293 0 0 0 0.22632 1 1468 1468 0.026206 0 1 37291 12676 25097 25113 36655 36655 0.026513095838708978 REEWRREELYR 11 Unmodified _REEWRREELYR_ 0 0 0 NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.276123046875 3 541.277972 1620.81209 NaN NaN NaN NaN NaN NaN NaN 100.38 1 96.084 95.584 96.584 -4.297 0 0 0 0.22632 1 19198 19198 0.50596 0.49867 1 37292 12676 25097 25113 36656 36656 0.026513095838708978 REEWRREELYR 11 Unmodified _REEWRREELYR_ 0 0 0 NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2779541015625 3 541.277972 1620.81209 NaN NaN NaN NaN NaN NaN NaN 89.533 1 85.755 85.255 86.255 -3.7779 0 0 0 0.22632 1 17140 17140 0.50596 0.33396 1 37293 12676 25097 25113 36657 36657 0.026513095838708978 REFEELRS 8 Unmodified _REFEELRS_ 0 0 0 nc|ENSG00000206562|Q8TCB7-2|METTL6;METTL6|p.F222Lfs*19|1|0.19|ENSG00000206562|chr3:15414028-15414028|A/-|frameshift_variant;ENSG00000206562|ENST00000383790|METTL6 nc|ENSG00000206562|Q8TCB7-2|METTL6 nc|ENSG00000206562|Q8TCB7-2|METTL6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2705688476562 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 45.874 1 43.009 42.509 43.509 -2.8653 0 0 0 0.22847 1 8329 8329 10.074 9.6657 1 37294 12568 25098 25114 36658 36658 -0.004609195675357114 REFEIIWVTKY 11 Unmodified _REFEIIWVTKY_ 0 0 0 MAP3K8|p.H236Y|1|0.37|ENSG00000107968|chr10:30450459-30450459|C/T|missense_variant MAP3K8|p.H236Y|1|0.37|ENSG00000107968|chr10:30450459-30450459|C/T|missense_variant MAP3K8|p.H236Y|1|0.37|ENSG00000107968|chr10:30450459-30450459|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3976440429688 2 742.400827 1482.7871 NaN NaN NaN NaN NaN NaN NaN 125.71 1 120.95 120.45 121.45 -4.7681 0 0 0 0.23595 1 24126 24126 3.5871 0.59182 1 37295 12110 25099 25115 36659 36659 0.0650186172854319 REFLEEKL 8 Unmodified _REFLEEKL_ 0 0 0 ENSG00000214929|ENST00000344803|SPATA31D1 ENSG00000214929|ENST00000344803|SPATA31D1 ENSG00000214929|ENST00000344803|SPATA31D1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2786254882812 2 532.292756 1062.57096 0.49968 0.00026598 -1.0052 -0.00053506 -0.50552 -0.00026908 532.2923409142331 101.09 0.66875 101.09 100.73 101.4 0 49 18 3 0 0 0 8448 1 19864 19864 14.838 4.7643 1 6068200 37296 7736 25100 25116 36660 36660 0.04217725614716983 REFLSQLTF 9 Unmodified _REFLSQLTF_ 0 0 0 tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1 tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1 tr|U7SMG3|U7SMG3_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recGPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2074890136719 3 380.873113 1139.59751 0.24484 9.3252E-05 0.31775 0.00012102 0.56259 0.00021427 380.8730201394039 78.408 0.59951 78.408 77.979 78.579 0 17 16 2 0 0 0 0.75263 1 15244 15244 3.8763 0 1 1357500 37297 26007 25101 25117 36661 36661 0.0332941450603812 REFNKYLAY 9 Unmodified _REFNKYLAY_ 0 0 0 nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF nc|ENSG00000293552|Q9H3R0-2|KDM4C nc|ENSG00000293552|Q9H3R0-2|KDM4C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2879638671875 2 602.31148 1202.60841 NaN NaN NaN NaN NaN NaN NaN 83.972 1 80.364 79.864 80.864 -3.6079 0 0 0 0.19891 1 16415 16415 23.79 4.5328 1 37298 2412 25102 25118 36662 36662 0.01520816880338316 REFNKYLAY 9 Unmodified _REFNKYLAY_ 0 0 0 nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF nc|ENSG00000293552|Q9H3R0-2|KDM4C nc|ENSG00000293552|Q9H3R0-2|KDM4C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.30078125 2 602.31148 1202.60841 NaN NaN NaN NaN NaN NaN NaN 84.18 1 80.271 79.771 80.771 -3.9093 0 0 0 0.21078 1 15999 15999 20.415 1.1575 1 37299 2412 25102 25118 36663 36663 0.01520816880338316 REFVNESV 8 Unmodified _REFVNESV_ 0 0 0 ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1 ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENST00000564124.5_1_16:48580029-48653834:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25750732421875 2 490.245806 978.47706 -0.11792 -5.7812E-05 1.8245 0.00089445 1.7066 0.00083664 490.24712092906657 60.611 0.66544 60.611 60.28 60.946 0 58 18 4 0 0 0 0.52597 1 11648 11648 26.884 0 1 8327600 37300 2154 25103 25119 36664 36664 -0.013039934875678227 REFVNESV 8 Unmodified _REFVNESV_ 0 0 0 ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1 ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENST00000564124.5_1_16:48580029-48653834:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.245806 978.47706 0.27667 0.00013564 2.237 0.0010967 2.5137 0.0012323 490.2468552939899 63.809 0.52012 60.393 60.149 60.669 -3.4158 -0.057575 7.8943E-06 NaN 26.884 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1464400 37301 2154 25103 25119 -0.013039934875678227 REFVNESV 8 Unmodified _REFVNESV_ 0 0 0 ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1 ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENST00000564124.5_1_16:48580029-48653834:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 490.245806 978.47706 0.020739 1.0167E-05 2.3657 0.0011598 2.3864 0.0011699 490.24687923432316 63.667 0.44871 60.41 60.157 60.606 -3.2567 -0.040614 0.00013403 NaN 26.884 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2587500 37302 2154 25103 25119 -0.013039934875678227 REFWSRFRKEK 11 Unmodified _REFWSRFRKEK_ 0 0 0 nc|ENSG00000136897|Q8N5N7-2|MRPL50;ENSG00000136897|ENST00000374865|MRPL50 nc|ENSG00000136897|Q8N5N7-2|MRPL50 nc|ENSG00000136897|Q8N5N7-2|MRPL50 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69091796875 3 523.61967 1567.83718 NaN NaN NaN NaN NaN NaN NaN 76.735 1 76.735 76.235 77.235 0 0 0 0 0.22632 1 14912 14912 0.50596 0.33396 1 37303 4051 25104 25120 36665 36665 0.07597409177037662 REGAGAPPPPP 11 Unmodified _REGAGAPPPPP_ 0 0 0 REV__ENST00000377142.4_1_20:21494349-21494634:-|nuORF REV__ENST00000377142.4_1_20:21494349-21494634:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6858520507812 2 523.274898 1044.53524 0.69584 0.00036411 2.5969 0.0013589 3.2927 0.001723 523.7782558171727 23.745 1.3923 22.192 21.763 23.155 -1.5532 126 39 5 0 0 0 0.088727 1 4056 4056 80.676 9.9605 1 19149000 + 37304 21090 25105 25121 36666 36666 0.014756881576886371 REGFITSGI 9 Unmodified _REGFITSGI_ 0 0 0 REV__ENSG00000147471|ENST00000328195|PLPBP REV__ENSG00000147471|ENST00000328195|PLPBP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2646179199219 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.46 1 175.46 174.96 175.96 0 0 0 0 0.18966 1 36352 36352 0.40827 0.15679 1 + 37305 16936 25106 25122 36667 36667 0.023328834091330464 REGFITSGI 9 Unmodified _REGFITSGI_ 0 0 0 REV__ENSG00000147471|ENST00000328195|PLPBP REV__ENSG00000147471|ENST00000328195|PLPBP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2646484375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.45 1 170.66 170.16 171.16 -4.7898 0 0 0 0.23508 1 35872 35872 6.7232 0 1 + 37306 16936 25106 25122 36668 36668 0.023328834091330464 REGFITSGI 9 Unmodified _REGFITSGI_ 0 0 0 REV__ENSG00000147471|ENST00000328195|PLPBP REV__ENSG00000147471|ENST00000328195|PLPBP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26434326171875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.46 1 170.58 170.08 171.08 -4.8845 0 0 0 0.19674 1 34893 34893 0.12781 0 1 + 37307 16936 25106 25122 36669 36669 0.023328834091330464 REGFITSGI 9 Unmodified _REGFITSGI_ 0 0 0 REV__ENSG00000147471|ENST00000328195|PLPBP REV__ENSG00000147471|ENST00000328195|PLPBP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26434326171875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.48 1 170.6 170.1 171.1 -4.8845 0 0 0 0.23508 1 34896 34896 6.7232 0 1 + 37308 16936 25106 25122 36670 36670 0.023328834091330464 REGGRILVH 9 Unmodified _REGGRILVH_ 0 0 0 TDG|p.Q217H|1|0.28|ENSG00000139372|chr12:103983172-103983172|G/T|missense_variant TDG|p.Q217H|1|0.28|ENSG00000139372|chr12:103983172-103983172|G/T|missense_variant TDG|p.Q217H|1|0.28|ENSG00000139372|chr12:103983172-103983172|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.53363037109375 3 346.205197 1035.59376 0.70029 0.00024244 -0.94345 -0.00032663 -0.24316 -8.4183E-05 346.20491121462874 24.389 0.41908 22.74 22.507 22.926 -1.6482 27 11 4 0 0 0 0.6226 1 4279 4279 4.897 0 1 2029900 37309 25832 25107 25123 36671 36671 0.07738789522841216 REGGRILVH 9 Unmodified _REGGRILVH_ 0 0 0 TDG|p.Q217H|1|0.28|ENSG00000139372|chr12:103983172-103983172|G/T|missense_variant TDG|p.Q217H|1|0.28|ENSG00000139372|chr12:103983172-103983172|G/T|missense_variant TDG|p.Q217H|1|0.28|ENSG00000139372|chr12:103983172-103983172|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 346.205197 1035.59376 0.006526 2.2593E-06 -0.20376 -7.0541E-05 -0.19723 -6.8282E-05 346.2051452394981 24.282 0.44922 22.748 22.542 22.991 -1.5342 0.003847 0.00035439 NaN 4.897 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2099700 37310 25832 25107 25123 0.07738789522841216 REGPPHIKEFY 11 Unmodified _REGPPHIKEFY_ 0 0 0 REV__ENSG00000182950|ENST00000332145|ODF3L1 REV__ENSG00000182950|ENST00000332145|ODF3L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2300720214844 3 458.238455 1371.69353 NaN NaN NaN NaN NaN NaN NaN 54.176 1 54.176 53.676 54.676 0 0 0 0 0.22632 1 10329 10329 0.172 0.10814 1 + 37311 18811 25108 25124 36672 36672 0.022555623461357754 REGPQPLL 8 Unmodified _REGPQPLL_ 0 0 0 ENST00000329875.12_1_17:79890528-79890927:-|nuORF ENST00000329875.12_1_17:79890528-79890927:-|nuORF ENST00000329875.12_1_17:79890528-79890927:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 303.73193359375 3 303.843265 908.507966 -0.48615 -0.00014771 -0.098982 -3.0075E-05 -0.58513 -0.00017779 303.8432028733626 21.779 0.20353 21.779 21.635 21.838 0 9 5 2 0 0 0 0.89687 1 3664 3664 3.2813 2.9743 1 308340 37312 8764 25109 25125 36673 36673 0.050052046173163944 REGPQPLL 8 Unmodified _REGPQPLL_ 0 0 0 ENST00000329875.12_1_17:79890528-79890927:-|nuORF ENST00000329875.12_1_17:79890528-79890927:-|nuORF ENST00000329875.12_1_17:79890528-79890927:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 303.843265 908.507966 -0.06529 -1.9838E-05 -0.24233 -7.3629E-05 -0.30762 -9.3467E-05 303.8432385654236 23.164 0.30988 21.71 21.578 21.888 -1.4535 -0.034426 -7.3828E-05 NaN 3.2813 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 719380 37313 8764 25109 25125 0.050052046173163944 REGSHVRR 8 Unmodified _REGSHVRR_ 0 0 0 REV__ENSG00000156853|ENST00000287461|ZNF689 REV__ENSG00000156853|ENST00000287461|ZNF689 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.0091552734375 3 332.853046 995.537309 0.13592 4.5241E-05 2.0838 0.0006936 2.2197 0.00073884 332.8537533196801 26.235 0.41424 24.6 24.408 24.822 -1.6347 15 11 2 0 0 0 1.0259 1 4319 4319 2.7352 1.0826 1 610110 + 37314 17271 25110 25126 36674 36674 0.039361616861810944 REGSHVRR 8 Unmodified _REGSHVRR_ 0 0 0 REV__ENSG00000156853|ENST00000287461|ZNF689 REV__ENSG00000156853|ENST00000287461|ZNF689 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 332.853046 995.537309 -0.37883 -0.00012609 3.006 0.0010006 2.6272 0.00087446 332.8542129184402 24.673 0.23589 24.673 24.545 24.781 0 0.03615 0.00065038 NaN 2.7352 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 471560 + 37315 17271 25110 25126 0.039361616861810944 REGVRWEVLSY 11 Unmodified _REGVRWEVLSY_ 0 0 0 REV__PCDHA2|p.R497W|1|0.4|ENSG00000204969|chr5:140796453-140796453|C/T|missense_variant REV__PCDHA2|p.R497W|1|0.4|ENSG00000204969|chr5:140796453-140796453|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2462158203125 3 465.245609 1392.715 NaN NaN NaN NaN NaN NaN NaN 148.35 1 143.29 142.79 143.79 -5.0595 0 0 0 0.22632 1 28730 28730 1.4551 1.4289 1 + 37316 24440 25111 25127 36675 36675 0.034349473748534365 REHFQHVAA 9 Unmodified _REHFQHVAA_ 0 0 0 ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant;ADNP|p.A1012Sfs*11|1|0.25|ENSG00000101126|chr20:50891681-50891682|-/G|frameshift_variant;ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP;ADNP|p.K659Sfs*17|1|0.38|ENSG00000101126|chr20:50892738-50892738|T/-|frameshift_variant ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7789916992188 2 547.778139 1093.54173 NaN NaN NaN NaN NaN NaN NaN 18.978 1 17.667 17.167 18.167 -1.3109 0 0 0 0.16423 1 3110 3110 28.495 11.382 1 37317 85 25112 25128 36676 36676 -0.0013037389089731732 REHFQHVAA 9 Unmodified _REHFQHVAA_ 0 0 0 ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant;ADNP|p.A1012Sfs*11|1|0.25|ENSG00000101126|chr20:50891681-50891682|-/G|frameshift_variant;ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP;ADNP|p.K659Sfs*17|1|0.38|ENSG00000101126|chr20:50892738-50892738|T/-|frameshift_variant ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 365.5209045410156 3 365.521185 1093.54173 -1.7528 -0.0006407 -1.3182 -0.00048183 -3.071 -0.0011225 365.5218167110093 19.044 0.66066 17.408 17.078 17.739 -1.6351 45 18 4 0 0 0 0.35556 1 2861 2861 13.535 6.9046 1 1939200 37318 85 25112 25128 36677 36677 -0.0013037389089731732 REHFQHVAA 9 Unmodified _REHFQHVAA_ 0 0 0 ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant;ADNP|p.A1012Sfs*11|1|0.25|ENSG00000101126|chr20:50891681-50891682|-/G|frameshift_variant;ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP;ADNP|p.K659Sfs*17|1|0.38|ENSG00000101126|chr20:50892738-50892738|T/-|frameshift_variant ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 365.521185 1093.54173 -0.2045 -7.4747E-05 0.054456 1.9905E-05 -0.15004 -5.4842E-05 365.52124228363243 19.002 0.34585 17.652 17.514 17.86 -1.3499 0.12404 -3.7275E-05 NaN 13.535 25 9 4 NaN NaN NaN NaN 0 NaN NaN 0 2290300 37319 85 25112 25128 -0.0013037389089731732 REHFQHVAA 9 Unmodified _REHFQHVAA_ 0 0 0 ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant;ADNP|p.A1012Sfs*11|1|0.25|ENSG00000101126|chr20:50891681-50891682|-/G|frameshift_variant;ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP;ADNP|p.K659Sfs*17|1|0.38|ENSG00000101126|chr20:50892738-50892738|T/-|frameshift_variant ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 365.521185 1093.54173 -0.34567 -0.00012635 0.1853 6.7732E-05 -0.16037 -5.8619E-05 365.5212745791613 18.849 0.32348 17.524 17.398 17.721 -1.3251 -0.0040376 0.00010621 NaN 13.535 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2835400 37320 85 25112 25128 -0.0013037389089731732 REHILEDEKP 10 Unmodified _REHILEDEKP_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 422.33831787109375 3 422.554331 1264.64116 0.19376 8.1876E-05 -0.34534 -0.00014592 -0.15157 -6.4048E-05 422.55426144634265 31.532 0.69906 29.384 29.023 29.722 -2.1483 52 19 4 0 0 0 0.69673 1 5450 5450 11.518 5.326 1 2177000 37321 2153 25113 25129 36678 36678 0.019429792125038148 REHILEDEKP 10 Unmodified _REHILEDEKP_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 422.554331 1264.64116 0.12514 5.2878E-05 -0.7901 -0.00033386 -0.66496 -0.00028098 422.55412962965806 29.273 0.55675 29.273 28.985 29.541 0 -0.089914 -0.00049256 NaN 11.518 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2640200 37322 2153 25113 25129 0.019429792125038148 REHILEDEKP 10 Unmodified _REHILEDEKP_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 422.554331 1264.64116 0.12682 5.3589E-05 -0.19063 -8.0552E-05 -0.063808 -2.6962E-05 422.55427778375304 31.645 0.56277 29.415 29.094 29.657 -2.2305 0.051943 0.00026736 NaN 11.518 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2684300 37323 2153 25113 25129 0.019429792125038148 REHILEDEKP 10 Unmodified _REHILEDEKP_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 422.554331 1264.64116 0.26313 0.00011118 -0.43331 -0.0001831 -0.17019 -7.1914E-05 422.55421036845866 31.407 0.63653 29.38 29.022 29.658 -2.0264 0.017274 -4.0285E-05 NaN 11.518 46 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2772600 37324 2153 25113 25129 0.019429792125038148 REHMGNVVEA 10 Unmodified _REHMGNVVEA_ 0 0 0 ENST00000458412.1_2_15:44093902-44094001:+|nuORF;ENSG00000242028|ENST00000442995|HYPK ENST00000458412.1_2_15:44093902-44094001:+|nuORF ENST00000458412.1_2_15:44093902-44094001:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2121887207031 3 381.185474 1140.53459 -0.080753 -3.0782E-05 0.023423 8.9287E-06 -0.05733 -2.1853E-05 381.1855405778261 27.87 0.4796 27.87 27.562 28.042 0 28 13 3 0 0 0 0.42535 1 4923 4923 8.893 7.8279 1 2345600 37325 7863 25114 25130 36679 36679 -0.030054745536290284 REHMGNVVEA 10 Unmodified _REHMGNVVEA_ 0 0 0 ENST00000458412.1_2_15:44093902-44094001:+|nuORF;ENSG00000242028|ENST00000442995|HYPK ENST00000458412.1_2_15:44093902-44094001:+|nuORF ENST00000458412.1_2_15:44093902-44094001:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2176208496094 3 381.185474 1140.53459 0.34692 0.00013224 -0.31168 -0.00011881 0.035239 1.3433E-05 381.18540279150744 29.768 0.59089 27.875 27.51 28.101 -1.8928 32 16 3 0 0 0 1.1127 1 5077 5077 14.611 11.507 1 3863000 37326 7863 25114 25130 36680 36680 -0.030054745536290284 REHPALRSL 9 Unmodified _REHPALRSL_ 0 0 0 ENSG00000165644|ENST00000372538|COMTD1;ENST00000469299.1_2_10:76995129-76995674:-|nuORF;ENST00000460899.5_1_10:76995169-76995460:-|nuORF ENSG00000165644|ENST00000372538|COMTD1 ENSG00000165644|ENST00000372538|COMTD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2083435058594 3 360.208718 1077.60433 NaN NaN NaN NaN NaN NaN NaN 29.993 1 29.993 29.493 30.493 0 0 0 0 0.23508 1 5380 5380 7.4771 1.2713 1 37327 5646 25115 25131 36681 36681 0.0686277217728275 REHPALRSL 9 Unmodified _REHPALRSL_ 0 0 0 ENSG00000165644|ENST00000372538|COMTD1;ENST00000469299.1_2_10:76995129-76995674:-|nuORF;ENST00000460899.5_1_10:76995169-76995460:-|nuORF ENSG00000165644|ENST00000372538|COMTD1 ENSG00000165644|ENST00000372538|COMTD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20880126953125 3 360.208718 1077.60433 -0.054518 -1.9638E-05 -0.42622 -0.00015353 -0.48073 -0.00017316 360.20864497932246 32.113 0.3915 29.882 29.691 30.082 -2.2305 15 10 2 0 0 0 0.63181 1 5832 5832 10.899 0.58372 1 633170 37328 5646 25115 25131 36682 36682 0.0686277217728275 REHPALRSL 9 Unmodified _REHPALRSL_ 0 0 0 ENSG00000165644|ENST00000372538|COMTD1;ENST00000469299.1_2_10:76995129-76995674:-|nuORF;ENST00000460899.5_1_10:76995169-76995460:-|nuORF ENSG00000165644|ENST00000372538|COMTD1 ENSG00000165644|ENST00000372538|COMTD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2090148925781 3 360.208718 1077.60433 0.27874 0.0001004 -0.75513 -0.000272 -0.47639 -0.0001716 360.2083522982861 31.883 0.524 29.856 29.658 30.182 -2.0264 22 14 2 0 0 0 0.73398 1 5495 5495 4.7159 1.6437 1 742710 37329 5646 25115 25131 36683 36683 0.0686277217728275 REHPALRSL 9 Unmodified _REHPALRSL_ 0 0 0 ENSG00000165644|ENST00000372538|COMTD1;ENST00000469299.1_2_10:76995129-76995674:-|nuORF;ENST00000460899.5_1_10:76995169-76995460:-|nuORF ENSG00000165644|ENST00000372538|COMTD1 ENSG00000165644|ENST00000372538|COMTD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2086181640625 3 360.208718 1077.60433 -0.2175 -7.8347E-05 -0.1836 -6.6133E-05 -0.4011 -0.00014448 360.2086474133823 32.018 0.44938 29.87 29.688 30.137 -2.1483 18 12 2 0 0 0 0.55357 2 5527 5527;5561 16.275 2.7559 1 585360 37330 5646 25115 25131 36684;36685 36684 0.0686277217728275 REHPKVNVP 9 Unmodified _REHPKVNVP_ 0 0 0 ENST00000465524.5_1_19:49414488-49422475:+|nuORF;ENSG00000104805|ENST00000405315|NUCB1 ENST00000465524.5_1_19:49414488-49422475:+|nuORF ENST00000465524.5_1_19:49414488-49422475:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2074890136719 3 359.205085 1074.59343 0.7963 0.00028604 -0.81164 -0.00029154 -0.015336 -5.5087E-06 359.2047660284553 26.616 0.75499 24.834 24.483 25.238 -1.7821 66 21 4 0 0 0 0.72996 1 4723 4723 3.0723 1.33 1 8763400 37331 2255 25116 25132 36686 36686 0.05911369802993249 REHRHRQRYYY 11 Unmodified _REHRHRQRYYY_ 0 0 0 REV__DNAJC18|p.R204Q|1|0.24|ENSG00000170464|chr5:139425063-139425063|C/T|missense_variant REV__DNAJC18|p.R204Q|1|0.24|ENSG00000170464|chr5:139425063-139425063|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 555.4435424804688 3 555.281939 1662.82399 NaN NaN NaN NaN NaN NaN NaN 56.145 1 52.969 52.469 53.469 -3.1761 0 0 0 0.22632 1 10439 10439 0.026206 0.026206 1 + 37332 13724 25117 25133 36687 36687 0.01908971117723013 REHRHRRRYYY 11 Unmodified _REHRHRRRYYY_ 0 0 0 REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 564.8670043945312 3 564.629451 1690.86652 0.17088 9.6482E-05 2.6411 0.0014912 2.812 0.0015877 564.9639344521885 163.05 0.20309 157.9 157.75 157.96 -5.1438 8 5 2 0 0 0 0.96228 1 31713 31713 0 0 1 9200000 + 37333 18164 25118 25134 36688 36688 0.04872366245945159 REHSAFQAP 9 Unmodified _REHSAFQAP_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.257568359375 2 521.756872 1041.49919 0.21737 0.00011341 -0.28907 -0.00015082 -0.0717 -3.741E-05 521.7566775609695 32.451 0.52222 32.451 32.188 32.71 0 26 14 3 0 0 0 0.17734 3 5878 5878;5900;5926 40.239 16.219 1 1907800 37334 1385 25119 25135 36689;36690;36691 36689 -0.01989769019155574 REHSAFQAP 9 Unmodified _REHSAFQAP_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2584228515625 2 521.756872 1041.49919 -0.41759 -0.00021788 0.5234 0.00027309 0.10581 5.5206E-05 521.7571026898971 34.708 0.48468 32.39 32.155 32.639 -2.3175 27 13 3 0 0 0 0.26842 1 6365 6365 33.445 19.539 1 1603200 37335 1385 25119 25135 36692 36692 -0.01989769019155574 REHSAFQAP 9 Unmodified _REHSAFQAP_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2578735351562 2 521.756872 1041.49919 -0.53438 -0.00027881 0.75506 0.00039396 0.22068 0.00011514 521.7573291261632 34.527 0.52007 32.274 32.012 32.532 -2.2527 29 14 3 0 0 0 0.26842 2 6072 6031;6072 33.445 19.539 1 2149600 37336 1385 25119 25135 36693;36694 36694 -0.01989769019155574 REHSAFQAP 9 Unmodified _REHSAFQAP_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2584838867188 2 521.756872 1041.49919 0.40814 0.00021295 -0.36595 -0.00019094 0.042182 2.2009E-05 521.7566527424488 34.581 0.42304 32.341 32.063 32.486 -2.2405 25 11 3 0 0 0 0.37634 1 6048 6048 27.223 9.0769 1 1367000 37337 1385 25119 25135 36695 36695 -0.01989769019155574 REHVERHFRK 10 Unmodified _REHVERHFRK_ 0 0 0 nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13;USP13|p.L118*|1|0.14|ENSG00000058056|chr3:179690293-179690293|T/-|frameshift_variant;USP13|p.L118Ffs*6|1|0.35|ENSG00000058056|chr3:179690292-179690293|-/T|frameshift_variant;USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant nc|ENSG00000058056|Q92995-2|USP13 nc|ENSG00000058056|Q92995-2|USP13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2420349121094 3 465.256843 1392.7487 NaN NaN NaN NaN NaN NaN NaN 63.109 1 59.852 59.352 60.352 -3.2567 0 0 0 2.8426 1 11841 11841 3.8763 0 1 37338 1289 25120 25136 36696 36696 0.06803413657235069 REHVLARY 8 Unmodified _REHVLARY_ 0 0 0 REV__ENST00000559042.1_1_14:24612781-24612898:-|nuORF REV__ENST00000559042.1_1_14:24612781-24612898:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2572021484375 2 522.290882 1042.56721 NaN NaN NaN NaN NaN NaN NaN 138.83 1 134.19 133.69 134.69 -4.6439 0 0 0 0.21486 1 27414 27414 8.5933 0 1 + 37339 14749 25121 25137 36697 36697 0.04763100631521411 REIDVRLDRNA 11 Unmodified _REIDVRLDRNA_ 0 0 0 nc|ENSG00000104177|Q9P2K5-3|MYEF2;nc|ENSG00000104177|Q9P2K5-2|MYEF2;nc|ENSG00000104177|Q9P2K5|MYEF2;ENSG00000104177|ENST00000324324|MYEF2 nc|ENSG00000104177|Q9P2K5-3|MYEF2 nc|ENSG00000104177|Q9P2K5-3|MYEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7657775878906 3 452.916263 1355.72696 0.53189 0.0002409 -0.68843 -0.0003118 -0.15653 -7.0896E-05 452.91592411031695 44.628 0.48895 44.628 44.288 44.777 0 31 13 3 0 0 0 0.75092 1 8348 8348 8.2864 0 1 3009500 37340 2221 25122 25138 36698 36698 0.06332564118042683 REIDVRLDRNA 11 Unmodified _REIDVRLDRNA_ 0 0 0 nc|ENSG00000104177|Q9P2K5-3|MYEF2;nc|ENSG00000104177|Q9P2K5-2|MYEF2;nc|ENSG00000104177|Q9P2K5|MYEF2;ENSG00000104177|ENST00000324324|MYEF2 nc|ENSG00000104177|Q9P2K5-3|MYEF2 nc|ENSG00000104177|Q9P2K5-3|MYEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7500305175781 3 452.916263 1355.72696 -0.04532 -2.0526E-05 -0.2695 -0.00012206 -0.31482 -0.00014259 452.9161390661495 47.533 0.5503 44.591 44.273 44.824 -2.9421 36 15 3 0 0 0 0.76353 1 8702 8702 7.4291 0 1 3743500 37341 2221 25122 25138 36699 36699 0.06332564118042683 REIDVRLDRNA 11 Unmodified _REIDVRLDRNA_ 0 0 0 nc|ENSG00000104177|Q9P2K5-3|MYEF2;nc|ENSG00000104177|Q9P2K5-2|MYEF2;nc|ENSG00000104177|Q9P2K5|MYEF2;ENSG00000104177|ENST00000324324|MYEF2 nc|ENSG00000104177|Q9P2K5-3|MYEF2 nc|ENSG00000104177|Q9P2K5-3|MYEF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 452.916263 1355.72696 -0.16282 -7.3744E-05 -0.11124 -5.0382E-05 -0.27406 -0.00012413 452.91622045924925 47.333 0.5598 44.464 44.217 44.776 -2.869 -0.099504 0.00028356 NaN 8.2864 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 5221100 37342 2221 25122 25138 0.06332564118042683 REIDVRLDRNA 11 Unmodified _REIDVRLDRNA_ 0 0 0 nc|ENSG00000104177|Q9P2K5-3|MYEF2;nc|ENSG00000104177|Q9P2K5-2|MYEF2;nc|ENSG00000104177|Q9P2K5|MYEF2;ENSG00000104177|ENST00000324324|MYEF2 nc|ENSG00000104177|Q9P2K5-3|MYEF2 nc|ENSG00000104177|Q9P2K5-3|MYEF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 452.916263 1355.72696 -0.13757 -6.2308E-05 -0.28195 -0.0001277 -0.41952 -0.00019001 452.91612272503863 47.52 0.58345 44.57 44.26 44.844 -2.9499 0.0066064 5.16E-05 NaN 8.2864 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2315800 37343 2221 25122 25138 0.06332564118042683 REIDYKTAF 9 Unmodified _REIDYKTAF_ 0 0 0 nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523998.1_1_8:95888301-95888382:+|nuORF nc|ENSG00000164941|Q75QN2-2|INTS8 nc|ENSG00000164941|Q75QN2-2|INTS8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2117614746094 3 381.532868 1141.57677 -0.3055 -0.00011656 0.064091 2.4453E-05 -0.24141 -9.2105E-05 381.5328129577222 70.661 0.55845 70.661 70.344 70.903 0 34 15 3 0 0 0 0.54058 1 13662 13662 12.241 5.6103 1 2488900 37344 5578 25123 25139 36700 36700 0.011648241263856107 REIDYKTAF 9 Unmodified _REIDYKTAF_ 0 0 0 nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523998.1_1_8:95888301-95888382:+|nuORF nc|ENSG00000164941|Q75QN2-2|INTS8 nc|ENSG00000164941|Q75QN2-2|INTS8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 381.532868 1141.57677 -0.31138 -0.0001188 -0.046332 -1.7677E-05 -0.35771 -0.00013648 381.5328273558708 73.98 0.72303 70.616 70.299 71.022 -3.3643 -0.037875 7.4792E-05 NaN 12.241 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4530600 37345 5578 25123 25139 0.011648241263856107 REIDYKTAF 9 Unmodified _REIDYKTAF_ 0 0 0 nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523998.1_1_8:95888301-95888382:+|nuORF nc|ENSG00000164941|Q75QN2-2|INTS8 nc|ENSG00000164941|Q75QN2-2|INTS8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 381.532868 1141.57677 0.18512 7.0631E-05 -0.49594 -0.00018922 -0.31082 -0.00011859 381.53263465872874 74.367 0.7972 70.69 70.208 71.005 -3.6764 0.036581 -0.00043983 NaN 12.241 46 22 3 NaN NaN NaN NaN 0 NaN NaN 0 2472600 37346 5578 25123 25139 0.011648241263856107 REIDYKTAF 9 Unmodified _REIDYKTAF_ 0 0 0 nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523998.1_1_8:95888301-95888382:+|nuORF nc|ENSG00000164941|Q75QN2-2|INTS8 nc|ENSG00000164941|Q75QN2-2|INTS8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 381.532868 1141.57677 -0.3086 -0.00011774 0.06885 2.6268E-05 -0.23975 -9.1473E-05 381.532843745357 74.241 0.69617 70.647 70.292 70.988 -3.594 -0.0064989 0.00020663 NaN 12.241 36 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3824100 37347 5578 25123 25139 0.011648241263856107 REIEWIRSRRY 11 Unmodified _REIEWIRSRRY_ 0 0 0 ENST00000551270.1_1_12:104237536-104277386:-|nuORF;nc|ENSG00000214198|Q6P2S7|TTC41P ENST00000551270.1_1_12:104237536-104277386:-|nuORF ENST00000551270.1_1_12:104237536-104277386:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2718505859375 3 521.954941 1562.84299 -0.36794 -0.00019205 0.25848 0.00013491 -0.10946 -5.7133E-05 522.2896609666665 90.288 0.3186 86.244 85.987 86.306 -4.0443 9 8 2 0 0 0 0.66234 1 17164 17164 0.172 0 1 1536600 37348 11184 25124 25140 36701 36701 0.08408507688727695 REIGYALSA 9 Unmodified _REIGYALSA_ 0 0 0 REV__nc|ENSG00000057657|O75626-3|PRDM1 REV__nc|ENSG00000057657|O75626-3|PRDM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26409912109375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 84.048 1 84.048 83.548 84.548 0 0 0 0 0.18489 1 16387 16387 17.113 4.8722 1 + 37349 14125 25125 25141 36702 36702 0.023328834091216777 REIGYALSA 9 Unmodified _REIGYALSA_ 0 0 0 REV__nc|ENSG00000057657|O75626-3|PRDM1 REV__nc|ENSG00000057657|O75626-3|PRDM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.263916015625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 87.915 1 83.919 83.419 84.419 -3.9953 0 0 0 0.19687 1 16745 16745 8.1555 0 1 + 37350 14125 25125 25141 36703 36703 0.023328834091216777 REILKTYAA 9 Unmodified _REILKTYAA_ 0 0 0 TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant;ENSG00000167333|ENST00000300747|TRIM68;ENST00000531101.5_1_11:4621508-4624512:-|nuORF;nc|ENSG00000167333|Q6AZZ1-2|TRIM68 TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27001953125 2 532.808574 1063.60259 0.3697 0.00019698 0.063155 3.3649E-05 0.43285 0.00023063 532.8085489876466 44.341 0.7563 44.341 43.917 44.673 0 60 21 4 0 0 0 0.11282 3 8314 8314;8318;8337 51.415 23.786 1 12539000 37351 5803 25126 25142 36704;36705;36706 36704 0.07333718368658992 REILKTYAA 9 Unmodified _REILKTYAA_ 0 0 0 TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant;ENSG00000167333|ENST00000300747|TRIM68;ENST00000531101.5_1_11:4621508-4624512:-|nuORF;nc|ENSG00000167333|Q6AZZ1-2|TRIM68 TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 355.5135498046875 3 355.541475 1063.60259 0.0081515 2.8982E-06 -0.067615 -2.404E-05 -0.059463 -2.1142E-05 355.5414044404912 44.359 0.7563 44.359 43.917 44.673 0 50 21 3 0 0 0 0.47592 1 8382 8382 17.113 17.069 1 4885400 37352 5803 25126 25142 36707 36707 0.07333718368658992 REILKTYAA 9 Unmodified _REILKTYAA_ 0 0 0 TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant;ENSG00000167333|ENST00000300747|TRIM68;ENST00000531101.5_1_11:4621508-4624512:-|nuORF;nc|ENSG00000167333|Q6AZZ1-2|TRIM68 TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2710571289062 2 532.808574 1063.60259 0.016158 8.6091E-06 0.93691 0.00049919 0.95307 0.0005078 532.8089477237265 47.232 0.62565 44.363 44.081 44.706 -2.869 48 17 4 0 0 0 0.27464 1 8924 8924 54.068 37.02 1 12413000 37353 5803 25126 25142 36708 36708 0.07333718368658992 REILKTYAA 9 Unmodified _REILKTYAA_ 0 0 0 TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant;ENSG00000167333|ENST00000300747|TRIM68;ENST00000531101.5_1_11:4621508-4624512:-|nuORF;nc|ENSG00000167333|Q6AZZ1-2|TRIM68 TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2718505859375 2 532.808574 1063.60259 0.39152 0.0002086 0.48332 0.00025752 0.87484 0.00046612 532.80873712548 47.367 0.68727 44.425 44.033 44.72 -2.9421 52 19 4 0 0 0 0.30018 1 8630 8630 51.415 29.878 1 13844000 37354 5803 25126 25142 36709 36709 0.07333718368658992 REILKTYAA 9 Unmodified _REILKTYAA_ 0 0 0 TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant;ENSG00000167333|ENST00000300747|TRIM68;ENST00000531101.5_1_11:4621508-4624512:-|nuORF;nc|ENSG00000167333|Q6AZZ1-2|TRIM68 TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2823486328125 2 532.808574 1063.60259 -0.039147 -2.0858E-05 0.93504 0.0004982 0.89589 0.00047734 532.8090403236472 47.323 0.65563 44.373 44.017 44.673 -2.9499 56 18 4 0 0 0 0.42092 1 8644 8644 43.982 26.869 1 10452000 37355 5803 25126 25142 36710 36710 0.07333718368658992 REIPSVVY 8 Unmodified _REIPSVVY_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7690124511719 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 87.954 1 84.162 83.662 84.662 -3.7926 0 0 0 0.15944 1 17200 17200 36.127 5.4905 1 37356 2456 25127 25143 36711 36711 0.040980714145121055 REIPSVVY 8 Unmodified _REIPSVVY_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.769287109375 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 87.976 1 83.98 83.48 84.48 -3.9953 0 0 0 0.17841 1 16754 16754 32.305 2.0807 1 37357 2456 25127 25143 36712 36712 0.040980714145121055 REIPSVVY 8 Unmodified _REIPSVVY_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76861572265625 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 88.219 1 84.223 83.723 84.723 -3.9953 0 0 0 0.19753 1 16801 16801 25.399 2.2509 1 37358 2456 25127 25143 36713 36713 0.040980714145121055 REIPSVVY 8 Unmodified _REIPSVVY_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.785888671875 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 88.012 1 84.262 83.762 84.762 -3.7501 0 0 0 0.19753 1 16842 16842 25.399 0 1 37359 2456 25127 25143 36714 36714 0.040980714145121055 REIQLEPY 8 Unmodified _REIQLEPY_ 0 0 0 REV__ENSG00000077420|ENST00000376236|APBB1IP REV__ENSG00000077420|ENST00000376236|APBB1IP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6885986328125 2 524.277106 1046.53966 -0.47753 -0.00025036 -0.16925 -8.8733E-05 -0.64677 -0.00033909 524.2767337840443 48.323 0.23849 45.381 45.287 45.525 -2.9421 8 6 2 0 0 0 0.89712 1 8809 8809 1.7423 1.6194 1 600930 + 37360 14365 25128 25144 36715 36715 0.01825152580613576 REIQVQHPA 9 Unmodified _REIQVQHPA_ 0 0 0 CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;ENSG00000163468|ENST00000295688|CCT3;ENST00000368256.3_1_1:156302875-156308050:-|nuORF;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2132263183594 3 359.86484 1076.57269 -0.22826 -8.2142E-05 0.49312 0.00017746 0.26486 9.5316E-05 359.86500661752194 22.837 0.66229 22.837 22.536 23.199 0 54 18 4 0 0 0 0.31598 1 3900 3900 30.703 10.289 1 19453000 37361 436 25129 25145 36716 36716 0.03746779423318003 REIQVQHPA 9 Unmodified _REIQVQHPA_ 0 0 0 CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;ENSG00000163468|ENST00000295688|CCT3;ENST00000368256.3_1_1:156302875-156308050:-|nuORF;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.1997375488281 3 359.86484 1076.57269 0.012825 4.6152E-06 0.076637 2.7579E-05 0.089462 3.2194E-05 359.86491779119365 24.359 0.48512 22.824 22.575 23.06 -1.5342 41 13 4 0 0 0 0.15128 1 3942 3942 43.982 21.207 1 14939000 37362 436 25129 25145 36717 36717 0.03746779423318003 REITYIQNL 9 Unmodified _REITYIQNL_ 0 0 0 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3180541992188 2 575.316763 1148.61897 -0.25664 -0.00014765 -1.042 -0.00059948 -1.2986 -0.00074712 575.316076608333 112.14 0.63189 107.72 107.34 107.97 -4.4231 42 17 3 0 0 0 0.40602 1 22062 22062 25.399 1.3787 1 11420000 + 37363 24894 25130 25146 36718 36718 0.050607995347718315 REKEEEPVA 9 Unmodified _REKEEEPVA_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES;HMCES|p.R350C|1|0.22|ENSG00000183624|chr3:129304808-129304808|C/T|missense_variant ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7752075195312 2 543.774928 1085.5353 0.23921 0.00013008 -0.093552 -5.0871E-05 0.14566 7.9207E-05 543.7748367300559 15.62 0.37633 15.62 15.438 15.814 0 28 10 4 0 0 0 0.11219 1 2376 2376 51.63 17.228 1 2890100 37364 6858 25131 25147 36719 36719 -0.004043566329301029 REKEEEPVA 9 Unmodified _REKEEEPVA_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES;HMCES|p.R350C|1|0.22|ENSG00000183624|chr3:129304808-129304808|C/T|missense_variant ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7864990234375 2 543.774928 1085.5353 -0.14492 -7.8802E-05 0.36297 0.00019737 0.21805 0.00011857 543.7750037714621 16.632 0.28082 15.416 15.25 15.531 -1.2159 17 7 3 0 0 0 0.27986 3 2628 2610;2612;2628 32.786 8.3036 1 1526600 37365 6858 25131 25147 36720;36721;36722 36722 -0.004043566329301029 REKEEEPVA 9 Unmodified _REKEEEPVA_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES;HMCES|p.R350C|1|0.22|ENSG00000183624|chr3:129304808-129304808|C/T|missense_variant ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7750854492188 2 543.774928 1085.5353 -0.47609 -0.00025889 0.52088 0.00028324 0.044781 2.4351E-05 543.7751775900299 16.641 0.24119 15.419 15.296 15.537 -1.2219 9 5 2 0 0 0 0.39189 1 2402 2402 26.268 3.5319 1 890240 37366 6858 25131 25147 36723 36723 -0.004043566329301029 REKEEFASA 9 Unmodified _REKEEFASA_ 0 0 0 TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant;ENSG00000100726|ENST00000262319|TELO2 TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2689208984375 2 533.76182 1065.50909 0.090077 4.808E-05 0.34523 0.00018427 0.4353 0.00023235 533.7617578794058 20.183 0.45964 20.183 19.928 20.387 0 28 12 3 0 0 0 0.6202 1 3323 3323 33.445 17.296 1 3696300 37367 2009 25132 25148 36724 36724 -0.021046258044179922 REKEEFASA 9 Unmodified _REKEEFASA_ 0 0 0 TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant;ENSG00000100726|ENST00000262319|TELO2 TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2716064453125 2 533.76182 1065.50909 0.17382 9.2779E-05 0.21291 0.00011364 0.38673 0.00020642 533.761761570014 21.47 0.51758 20.085 19.865 20.383 -1.3847 36 14 4 0 0 0 0.77497 1 3380 3380 21.59 4.4773 1 3176400 37368 2009 25132 25148 36725 36725 -0.021046258044179922 REKEEFASA 9 Unmodified _REKEEFASA_ 0 0 0 TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant;ENSG00000100726|ENST00000262319|TELO2 TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2702026367188 2 533.76182 1065.50909 -0.6125 -0.00032693 0.59507 0.00031763 -0.01743 -9.3035E-06 533.762093178856 21.761 0.4392 20.04 19.85 20.29 -1.7211 26 12 3 0 0 0 0.82357 1 3403 3403 15.248 15.248 1 2238000 37369 2009 25132 25148 36726 36726 -0.021046258044179922 REKETWQNV 9 Unmodified _REKETWQNV_ 0 0 0 ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 595.155517578125 2 595.301644 1188.58874 0.4564 0.0002717 0.2614 0.00015561 0.7178 0.00042731 595.3017844804899 37.987 0.63722 37.987 37.683 38.32 0 30 17 3 0 0 0 0.85913 1 7062 7062 6.2058 0.47393 1 3901100 37370 8026 25133 25149 36727 36727 0.0019844086957618856 REKETWQNV 9 Unmodified _REKETWQNV_ 0 0 0 ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 595.1947631835938 2 595.301644 1188.58874 0.37563 0.00022362 0.12435 7.4028E-05 0.49999 0.00029764 595.3016229325059 40.387 0.56859 37.847 37.569 38.137 -2.5398 26 15 2 0 0 0 0.73481 1 7263 7263 19.362 10.617 1 6295400 37371 8026 25133 25149 36728 36728 0.0019844086957618856 REKETWQNV 9 Unmodified _REKETWQNV_ 0 0 0 ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 595.155517578125 2 595.301644 1188.58874 0.13897 8.2726E-05 0.33206 0.00019768 0.47103 0.0002804 595.3017349034927 40.308 0.53134 37.819 37.543 38.075 -2.4896 28 14 3 0 0 0 0.74858 1 7207 7207 8.1555 6.6736 1 4081900 37372 8026 25133 25149 36729 36729 0.0019844086957618856 REKETWQNV 9 Unmodified _REKETWQNV_ 0 0 0 ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 ENSG00000275835|ENST00000615383|TUBGCP5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 595.301644 1188.58874 0.47386 0.00028209 -0.0036905 -2.197E-06 0.47017 0.00027989 595.3015489573011 40.564 0.52911 37.929 37.655 38.185 -2.6348 0.033723 -0.00021086 NaN 19.362 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5548300 37373 8026 25133 25149 0.0019844086957618856 REKIKQPVA 9 Unmodified _REKIKQPVA_ 0 0 0 ENST00000240316.4_1_17:55027977-55028133:-|nuORF;COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant ENST00000240316.4_1_17:55027977-55028133:-|nuORF ENST00000240316.4_1_17:55027977-55028133:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.55743408203125 3 356.888986 1067.64513 -0.35039 -0.00012505 0.53685 0.00019159 0.18646 6.6544E-05 356.8891507625935 16.003 0.48815 16.003 15.814 16.302 0 39 13 4 0 0 0 0.46796 1 2459 2459 21.59 7.9753 1 12985000 37374 608 25134 25150 36730 36730 0.1140111349691324 REKIKQPVA 9 Unmodified _REKIKQPVA_ 0 0 0 ENST00000240316.4_1_17:55027977-55028133:-|nuORF;COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant ENST00000240316.4_1_17:55027977-55028133:-|nuORF ENST00000240316.4_1_17:55027977-55028133:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 356.888986 1067.64513 -0.52789 -0.0001884 0.84577 0.00030185 0.31788 0.00011345 356.8892574399351 17.24 0.52312 16.024 15.811 16.334 -1.2159 0.02885 0.00014821 NaN 21.59 38 14 4 NaN NaN NaN NaN 0 NaN NaN 0 6313000 37375 608 25134 25150 0.1140111349691324 REKIKQPVA 9 Unmodified _REKIKQPVA_ 0 0 0 ENST00000240316.4_1_17:55027977-55028133:-|nuORF;COIL|p.N162Tfs*47|1|0.22|ENSG00000121058|chr17:56950757-56950757|T/-|frameshift_variant ENST00000240316.4_1_17:55027977-55028133:-|nuORF ENST00000240316.4_1_17:55027977-55028133:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 356.888986 1067.64513 -0.452 -0.00016131 0.72286 0.00025798 0.27087 9.6669E-05 356.88921663470234 17.23 0.44703 15.958 15.765 16.213 -1.2722 -0.037204 1.6621E-05 NaN 21.59 34 12 4 NaN NaN NaN NaN 0 NaN NaN 0 6001600 37376 608 25134 25150 0.1140111349691324 REKKWEWPQDY 11 Unmodified _REKKWEWPQDY_ 0 0 0 REV__nc|ENSG00000138606|Q7M4L6-2|SHF REV__nc|ENSG00000138606|Q7M4L6-2|SHF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2732543945312 3 522.256285 1563.74703 NaN NaN NaN NaN NaN NaN NaN 40.733 1 38.243 37.743 38.743 -2.4896 0 0 0 0.22632 1 7298 7298 0.172 0 1 + 37377 24062 25135 25151 36731 36731 -0.012296849419954015 REKKWEWPQDY 11 Unmodified _REKKWEWPQDY_ 0 0 0 REV__nc|ENSG00000138606|Q7M4L6-2|SHF REV__nc|ENSG00000138606|Q7M4L6-2|SHF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2745361328125 3 522.256285 1563.74703 NaN NaN NaN NaN NaN NaN NaN 128.57 1 123.83 123.33 124.33 -4.7408 0 0 0 0.22632 1 24741 24741 0.026206 0 1 + 37378 24062 25135 25151 36732 36732 -0.012296849419954015 REKKWEWPQDY 11 Unmodified _REKKWEWPQDY_ 0 0 0 REV__nc|ENSG00000138606|Q7M4L6-2|SHF REV__nc|ENSG00000138606|Q7M4L6-2|SHF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2675170898438 3 522.256285 1563.74703 NaN NaN NaN NaN NaN NaN NaN 148.34 1 143.28 142.78 143.78 -5.0595 0 0 0 0.22632 1 28729 28729 0.026206 0 1 + 37379 24062 25135 25151 36733 36733 -0.012296849419954015 REKLDLKY 8 Unmodified _REKLDLKY_ 0 0 0 REV__tr|U7T6N0|U7T6N0_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00304PE=4SV=1 REV__tr|U7T6N0|U7T6N0_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00304PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.07476806640625 3 355.541475 1063.60259 0.0049639 1.7649E-06 0.04041 1.4368E-05 0.045374 1.6132E-05 355.54143596068025 47.346 0.68862 44.404 44.066 44.755 -2.9421 45 19 3 0 0 0 1.0254 1 8589 8589 3.5965 0 1 6491000 + 37380 25449 25136 25152 36734 36734 0.07333718368658992 REKNQKLY 8 Unmodified _REKNQKLY_ 0 0 0 tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1 tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1 tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2048645019531 3 360.204974 1077.59309 -1.7398 -0.00062668 1.6666 0.00060031 -0.073213 -2.6372E-05 360.2055743212675 19.169 0.27481 17.534 17.429 17.704 -1.6351 11 7 2 0 0 0 8448 1 2880 2880 3.2813 0 1 499750 37381 26180 25137 25153 36735 36735 0.0573995008314796 REKRLKQKIKV 11 Unmodified _REKRLKQKIKV_ 0 0 0 ENST00000481507.5_1_9:37326993-37357262:+|nuORF;ENSG00000147905|ENST00000336755|ZCCHC7 ENST00000481507.5_1_9:37326993-37357262:+|nuORF ENST00000481507.5_1_9:37326993-37357262:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0734558105469 4 357.239864 1424.93035 -0.57785 -0.00020643 0.64856 0.00023169 0.070709 2.526E-05 357.49087379001173 16.958 0.27712 15.742 15.601 15.878 -1.2159 17 7 3 0 0 0 0.96218 1 2688 2688 1.2148 1.12 1 667100 37382 4723 25138 25154 36736 36736 0.23488333630302805 REKRLKQKIKV 11 Unmodified _REKRLKQKIKV_ 0 0 0 ENST00000481507.5_1_9:37326993-37357262:+|nuORF;ENSG00000147905|ENST00000336755|ZCCHC7 ENST00000481507.5_1_9:37326993-37357262:+|nuORF ENST00000481507.5_1_9:37326993-37357262:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 357.239864 1424.93035 -0.47366 -0.00016921 0.42947 0.00015342 -0.044197 -1.5789E-05 357.2399038579138 16.896 0.41398 15.624 15.454 15.868 -1.2722 -0.059282 -0.00017385 NaN 1.2148 19 11 3 NaN NaN NaN NaN 0 NaN NaN 0 675530 37383 4723 25138 25154 0.23488333630302805 REKRQQKKTKL 11 Unmodified _REKRQQKKTKL_ 0 0 0 REV__ENST00000373570.8_1_9:127620199-127620799:-|nuORF REV__ENST00000373570.8_1_9:127620199-127620799:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2493896484375 3 481.63532 1441.88413 NaN NaN NaN NaN NaN NaN NaN 162.75 1 157.61 157.11 158.11 -5.1438 0 0 0 0.23307 1 31634 31634 5.8681 1.1522 1 + 37384 16367 25139 25155 36737 36737 0.18086268728211508 REKRRLYRRRW 11 Unmodified _REKRRLYRRRW_ 0 0 0 REV__ENSG00000284188|ENST00000640271|unknown REV__ENSG00000284188|ENST00000640271|unknown MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 559.0032958984375 3 559.001107 1673.98149 NaN NaN NaN NaN NaN NaN NaN 12.059 1 10.939 10.439 11.439 -1.1206 0 0 0 0.22632 1 1415 1415 0 0 1 + 37385 19964 25140 25156 36738 36738 0.17146095447719745 REKRRRQEWKR 11 Unmodified _REKRRRQEWKR_ 0 0 0 TCHH|p.E1017K|1|0.06|ENSG00000159450|chr1:152110168-152110168|C/T|missense_variant TCHH|p.E1017K|1|0.06|ENSG00000159450|chr1:152110168-152110168|C/T|missense_variant TCHH|p.E1017K|1|0.06|ENSG00000159450|chr1:152110168-152110168|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.775634765625 3 543.316984 1626.92912 NaN NaN NaN NaN NaN NaN NaN 80.802 1 77.245 76.745 77.745 -3.557 0 0 0 0.22632 1 15777 15777 0.094841 0 1 37386 25828 25141 25157 36739 36739 0.14073512314075742 REKRRRQEWKR 11 Unmodified _REKRRRQEWKR_ 0 0 0 TCHH|p.E1017K|1|0.06|ENSG00000159450|chr1:152110168-152110168|C/T|missense_variant TCHH|p.E1017K|1|0.06|ENSG00000159450|chr1:152110168-152110168|C/T|missense_variant TCHH|p.E1017K|1|0.06|ENSG00000159450|chr1:152110168-152110168|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7817993164062 3 543.316984 1626.92912 0.3615 0.00019641 -3.3991 -0.0018468 -3.0376 -0.0016504 543.6491238010822 141.55 0.24174 136.69 136.61 136.85 -4.8678 8 6 2 0 0 0 0.89122 1 27305 27305 0.094841 0.068635 1 1512600 37387 25828 25141 25157 36740 36740 0.14073512314075742 REKTTLCVSI 10 Unmodified _REKTTLCVSI_ 0 0 0 ENST00000471789.1_1_9:123594085-123605145:-|nuORF;PSMD5|p.G278Wfs*8|2|0.31|ENSG00000095261|chr9:120824668-120824669|-/A|frameshift_variant;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5 ENST00000471789.1_1_9:123594085-123605145:-|nuORF ENST00000471789.1_1_9:123594085-123605145:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32080078125 2 575.318448 1148.62234 -0.58712 -0.00033778 -0.39719 -0.00022851 -0.98431 -0.00056629 575.3181212230805 12.237 0.1335 11.107 11.009 11.143 -1.1293 7 3 3 0 0 0 0.52989 1 1491 1491 1.9064 0.57684 1 833110 37388 1854 25142 25158 36741 36741 0.053977263171191225 REKYKNITA 9 Unmodified _REKYKNITA_ 0 0 0 ENST00000461247.1_1_9:17415842-17444242:+|nuORF;CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant;CNTLN|p.M1308*|1|0.36|ENSG00000044459|chr9:17484355-17484355|A/-|frameshift_variant;CNTLN|p.M1308Nfs*9|1|0.46|ENSG00000044459|chr9:17484354-17484355|-/A|frameshift_variant;CNTLN|p.T1324Dfs*27|1|0.14|ENSG00000044459|chr9:17484406-17484407|-/A|frameshift_variant;CNTLN|p.I1388Nfs*3|1|0.3|ENSG00000044459|chr9:17502587-17502588|-/A|frameshift_variant;nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN ENST00000461247.1_1_9:17415842-17444242:+|nuORF ENST00000461247.1_1_9:17415842-17444242:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2143859863281 3 374.880379 1121.61931 -0.24486 -9.1793E-05 -0.31323 -0.00011742 -0.55809 -0.00020922 374.88029626233947 16.577 0.41132 16.577 16.44 16.851 0 19 11 3 0 0 0 0.51461 1 2577 2577 18.721 7.2033 1 1415300 37389 598 25143 25159 36742 36742 0.06336219254603748 REKYKNITA 9 Unmodified _REKYKNITA_ 0 0 0 ENST00000461247.1_1_9:17415842-17444242:+|nuORF;CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant;CNTLN|p.M1308*|1|0.36|ENSG00000044459|chr9:17484355-17484355|A/-|frameshift_variant;CNTLN|p.M1308Nfs*9|1|0.46|ENSG00000044459|chr9:17484354-17484355|-/A|frameshift_variant;CNTLN|p.T1324Dfs*27|1|0.14|ENSG00000044459|chr9:17484406-17484407|-/A|frameshift_variant;CNTLN|p.I1388Nfs*3|1|0.3|ENSG00000044459|chr9:17502587-17502588|-/A|frameshift_variant;nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN ENST00000461247.1_1_9:17415842-17444242:+|nuORF ENST00000461247.1_1_9:17415842-17444242:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21466064453125 3 374.880379 1121.61931 -0.38379 -0.00014387 -0.051323 -1.924E-05 -0.43511 -0.00016311 374.880299918624 17.876 0.32076 16.565 16.404 16.725 -1.3109 18 8 3 0 0 0 0.51461 1 2870 2870 18.721 12.487 1 1933800 37390 598 25143 25159 36743 36743 0.06336219254603748 REKYKNITA 9 Unmodified _REKYKNITA_ 0 0 0 ENST00000461247.1_1_9:17415842-17444242:+|nuORF;CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant;CNTLN|p.M1308*|1|0.36|ENSG00000044459|chr9:17484355-17484355|A/-|frameshift_variant;CNTLN|p.M1308Nfs*9|1|0.46|ENSG00000044459|chr9:17484354-17484355|-/A|frameshift_variant;CNTLN|p.T1324Dfs*27|1|0.14|ENSG00000044459|chr9:17484406-17484407|-/A|frameshift_variant;CNTLN|p.I1388Nfs*3|1|0.3|ENSG00000044459|chr9:17502587-17502588|-/A|frameshift_variant;nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN ENST00000461247.1_1_9:17415842-17444242:+|nuORF ENST00000461247.1_1_9:17415842-17444242:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21417236328125 3 374.880379 1121.61931 -0.41579 -0.00015587 -0.020354 -7.6303E-06 -0.43614 -0.0001635 374.8803528031666 17.798 0.34522 16.525 16.351 16.696 -1.2722 18 9 3 0 0 0 0.5835 1 2628 2628 14.218 9.6893 1 1858500 37391 598 25143 25159 36744 36744 0.06336219254603748 REKYKNITA 9 Unmodified _REKYKNITA_ 0 0 0 ENST00000461247.1_1_9:17415842-17444242:+|nuORF;CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant;CNTLN|p.M1308*|1|0.36|ENSG00000044459|chr9:17484355-17484355|A/-|frameshift_variant;CNTLN|p.M1308Nfs*9|1|0.46|ENSG00000044459|chr9:17484354-17484355|-/A|frameshift_variant;CNTLN|p.T1324Dfs*27|1|0.14|ENSG00000044459|chr9:17484406-17484407|-/A|frameshift_variant;CNTLN|p.I1388Nfs*3|1|0.3|ENSG00000044459|chr9:17502587-17502588|-/A|frameshift_variant;nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN ENST00000461247.1_1_9:17415842-17444242:+|nuORF ENST00000461247.1_1_9:17415842-17444242:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2150573730469 3 374.880379 1121.61931 -1.9078 -0.0007152 1.2333 0.00046233 -0.67451 -0.00025286 374.8808875373034 18.027 0.41807 16.513 16.363 16.781 -1.5148 22 11 3 0 0 0 0.35556 1 2647 2647 14.957 10.06 1 1266600 37392 598 25143 25159 36745 36745 0.06336219254603748 RELDPSLVSA 10 Unmodified _RELDPSLVSA_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7930908203125 2 543.793121 1085.57169 0.76288 0.00041485 -0.59891 -0.00032568 0.16397 8.9167E-05 543.7927111364467 79.029 0.7951 79.029 78.649 79.444 0 55 22 4 0 0 0 0.092113 2 15356 15356;15395 63.227 20.915 1 9248700 37393 1610 25144 25160 36746;36747 36746 0.032325202637593975 RELDPSLVSA 10 Unmodified _RELDPSLVSA_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7930297851562 2 543.793121 1085.57169 0.21689 0.00011794 -0.15368 -8.357E-05 0.063208 3.4372E-05 543.7930191155792 82.514 0.83682 78.907 78.43 79.266 -3.6079 74 23 4 0 0 0 0.03168 3 16112 16064;16112;16153 87.258 28.533 1 12084000 37394 1610 25144 25160 36748;36749;36750 36749 0.032325202637593975 RELDPSLVSA 10 Unmodified _RELDPSLVSA_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7931518554688 2 543.793121 1085.57169 0.10981 5.9714E-05 0.0079851 4.3423E-06 0.1178 6.4056E-05 543.7931052981297 82.861 0.72813 78.987 78.668 79.396 -3.8736 62 20 4 0 0 0 0.03168 3 15715 15715;15754;15765 87.258 30.009 1 11597000 37395 1610 25144 25160 36751;36752;36753 36751 0.032325202637593975 RELDPSLVSA 10 Unmodified _RELDPSLVSA_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7930297851562 2 543.793121 1085.57169 -0.029234 -1.5897E-05 0.21256 0.00011559 0.18333 9.9691E-05 543.7932247735778 82.722 0.72957 79.023 78.66 79.389 -3.6985 52 20 3 0 0 0 0.069132 3 15779 15735;15779;15831 78.06 20.811 1 14232000 37396 1610 25144 25160 36754;36755;36756 36755 0.032325202637593975 RELEAQVQT 9 Unmodified _RELEAQVQT_ 0 0 0 nc|ENSG00000237850|P0DX00|GOLGA6L24 nc|ENSG00000237850|P0DX00|GOLGA6L24 nc|ENSG00000237850|P0DX00|GOLGA6L24 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.8699951171875 3 358.524372 1072.55129 -0.33697 -0.00012081 0.29731 0.00010659 -0.039664 -1.422E-05 358.5244635739223 16.215 1.0408 16.215 15.989 17.03 0 55 29 4 0 0 0 0.6226 1 2632 2632 4.897 0 1 25702000 37397 12615 25145 25161 36757 36757 0.017913496039454913 RELEAQVQT 9 Unmodified _RELEAQVQT_ 0 0 0 nc|ENSG00000237850|P0DX00|GOLGA6L24 nc|ENSG00000237850|P0DX00|GOLGA6L24 nc|ENSG00000237850|P0DX00|GOLGA6L24 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 358.524372 1072.55129 -0.51756 -0.00018556 0.50021 0.00017934 -0.017352 -6.2212E-06 358.5245035220635 17.288 0.45557 15.977 15.783 16.239 -1.3109 -0.095146 0.00010776 NaN 4.897 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 14845000 37398 12615 25145 25161 0.017913496039454913 RELEAQVQT 9 Unmodified _RELEAQVQT_ 0 0 0 nc|ENSG00000237850|P0DX00|GOLGA6L24 nc|ENSG00000237850|P0DX00|GOLGA6L24 nc|ENSG00000237850|P0DX00|GOLGA6L24 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 358.524372 1072.55129 -0.44896 -0.00016096 0.38806 0.00013913 -0.060901 -2.1834E-05 358.524461353438 17.297 0.34334 16.024 15.835 16.178 -1.2722 -0.04781 -1.2869E-05 NaN 4.897 24 9 4 NaN NaN NaN NaN 0 NaN NaN 0 7873200 37399 12615 25145 25161 0.017913496039454913 RELEDLKY 8 Unmodified _RELEDLKY_ 0 0 0 nc|ENSG00000198003|A5D8V7-2|ODAD3;ENSG00000198003|ENST00000356392|ODAD3 nc|ENSG00000198003|A5D8V7-2|ODAD3 nc|ENSG00000198003|A5D8V7-2|ODAD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2825317382812 2 533.282389 1064.55022 0.067801 3.6157E-05 0.2287 0.00012196 0.2965 0.00015812 533.2824926249845 86.162 1.3353 86.162 85.539 86.875 0 96 37 4 0 0 0 0.5707 1 16890 16890 24.021 3.5669 1 8528100 37400 7422 25146 25162 36758 36758 0.020531352350417365 RELEKAKVA 9 Unmodified _RELEKAKVA_ 0 0 0 ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant;LAMC1|p.A1148T|1|0.21|ENSG00000135862|chr1:183130505-183130505|G/A|missense_variant ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.85845947265625 3 348.545108 1042.61349 -0.792 -0.00027605 0.11557 4.028E-05 -0.67643 -0.00023577 348.54512706323777 15.712 0.2429 14.496 14.412 14.655 -1.2159 9 6 2 0 0 0 0.1428 1 2443 2443 36.127 13.391 1 572180 37401 3958 25147 25163 36759 36759 0.09389120742957857 RELEKAKVA 9 Unmodified _RELEKAKVA_ 0 0 0 ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant;LAMC1|p.A1148T|1|0.21|ENSG00000135862|chr1:183130505-183130505|G/A|missense_variant ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 348.545108 1042.61349 -0.42544 -0.00014829 0.18515 6.4532E-05 -0.2403 -8.3755E-05 348.5451330012891 14.754 0.35034 14.754 14.634 14.984 0 0.14874 -0.00017612 NaN 36.127 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1241200 37402 3958 25147 25163 0.09389120742957857 RELEKAKVA 9 Unmodified _RELEKAKVA_ 0 0 0 ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant;LAMC1|p.A1148T|1|0.21|ENSG00000135862|chr1:183130505-183130505|G/A|missense_variant ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 348.545108 1042.61349 -0.54818 -0.00019106 0.6655 0.00023196 0.11733 4.0894E-05 348.54529808739034 15.788 0.31082 14.566 14.4 14.711 -1.2219 -0.038972 0.00032615 NaN 36.127 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 542060 37403 3958 25147 25163 0.09389120742957857 RELEKFRT 8 Unmodified _RELEKFRT_ 0 0 0 nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162 nc|ENSG00000135315|Q5TB80-2|CEP162 nc|ENSG00000135315|Q5TB80-2|CEP162 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2047424316406 3 360.204974 1077.59309 -0.21166 -7.6242E-05 0.0052769 1.9008E-06 -0.20639 -7.4342E-05 360.2050540601095 19.039 0.23968 17.642 17.501 17.741 -1.3966 15 6 3 0 0 0 0.65893 1 3115 3115 18.373 3.1246 1 644190 37404 3914 25148 25164 36760 36760 0.0573995008314796 RELEKLYQ 8 Unmodified _RELEKLYQ_ 0 0 0 ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1 ENST00000490265.5_1_X:13771424-13787224:+|nuORF ENST00000490265.5_1_X:13771424-13787224:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.1995849609375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 29.785 1 29.785 29.285 30.285 0 0 0 0 0.21486 1 5335 5335 4.5289 0.93237 1 37405 1211 25149 25165 36761 36761 0.046171279889904326 RELETYRDLD 10 Unmodified _RELETYRDLD_ 0 0 0 TMOD1|p.K9T|1|0.05|ENSG00000136842|chr9:97524214-97524214|A/C|missense_variant TMOD1|p.K9T|1|0.05|ENSG00000136842|chr9:97524214-97524214|A/C|missense_variant TMOD1|p.K9T|1|0.05|ENSG00000136842|chr9:97524214-97524214|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2175598144531 3 437.217608 1308.63099 NaN NaN NaN NaN NaN NaN NaN 78.36 1 74.701 74.201 75.201 -3.6588 0 0 0 0.2258 1 14925 14925 14.218 1.3622 1 37406 25864 25150 25166 36762 36762 -0.010976285127071606 RELEVQHPA 9 Unmodified _RELEVQHPA_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2130126953125 3 360.192845 1077.55671 -0.17761 -6.3974E-05 0.5205 0.00018748 0.34289 0.00012351 360.1930279597807 26.106 1.0329 26.106 25.669 26.702 0 100 29 5 0 0 0 0.022252 2 4518 4518;4638 90.135 36.731 1 72338000 37407 5083 25151 25167 36763;36764 36763 0.02103073186435722 RELEVQHPA 9 Unmodified _RELEVQHPA_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2724609375 2 539.78563 1077.55671 1.0407 0.00056174 -0.54882 -0.00029624 0.49186 0.0002655 539.7853414324657 27.953 1.2467 25.997 25.563 26.81 -1.9561 116 35 5 0 0 0 0.069179 2 4993 4958;4993 67.187 22.242 1 155050000 37408 5083 25151 25167 36765;36766 36766 0.02103073186435722 RELEVQHPA 9 Unmodified _RELEVQHPA_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.2142639160156 3 360.192845 1077.55671 0.59219 0.0002133 -0.15936 -5.7401E-05 0.43283 0.0001559 360.1927815680489 27.882 0.94293 25.926 25.525 26.468 -1.9561 81 26 4 0 0 0 0.058839 1 4961 4961 89.193 46.961 1 46020000 37409 5083 25151 25167 36767 36767 0.02103073186435722 RELEVQHPA 9 Unmodified _RELEVQHPA_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20184326171875 3 360.192845 1077.55671 0.23646 8.517E-05 0.24363 8.7755E-05 0.48009 0.00017292 360.19292577181955 27.772 1.1876 26.016 25.583 26.77 -1.7552 114 33 5 0 0 0 0.75905 1 4817 4817 3.5871 0.95582 1 64796000 37410 5083 25151 25167 36768 36768 0.02103073186435722 RELEVQHPA 9 Unmodified _RELEVQHPA_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 539.78563 1077.55671 0.35386 0.00019101 0.22286 0.0001203 0.57673 0.00031131 539.7857688173021 27.772 1.8867 26.017 25.583 27.469 -1.7552 0.0018922 0.00042988 NaN 40.239 149 53 5 NaN NaN NaN NaN 0 NaN NaN 0 184970000 37411 5083 25151 25167 0.02103073186435722 RELEVQHPA 9 Unmodified _RELEVQHPA_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 539.78563 1077.55671 0.33227 0.00017935 0.29888 0.00016133 0.63115 0.00034069 539.785826384492 27.937 1.9212 25.941 25.538 27.459 -1.9962 -0.074007 0.00051195 NaN 40.239 152 54 5 NaN NaN NaN NaN 0 NaN NaN 0 149830000 37412 5083 25151 25167 0.02103073186435722 RELFRTKSS 9 Unmodified _RELFRTKSS_ 0 0 0 ENSG00000186230|ENST00000334181|ZNF749 ENSG00000186230|ENST00000334181|ZNF749 ENSG00000186230|ENST00000334181|ZNF749 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2186279296875 3 375.212128 1122.61456 -0.17241 -6.4691E-05 -0.045655 -1.713E-05 -0.21807 -8.1821E-05 375.2120762936588 21.249 0.27546 21.249 21.087 21.362 0 12 7 2 0 0 0 0.64764 1 3549 3549 0.96228 0 1 421040 37413 7046 25152 25168 36769 36769 0.058153351118335195 RELIKQEY 8 Unmodified _RELIKQEY_ 0 0 0 ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013244628906 3 360.201229 1077.58186 -0.13833 -4.9828E-05 0.42083 0.00015158 0.2825 0.00010176 360.20130367950105 38.397 0.31847 38.397 38.284 38.603 0 11 8 2 0 0 0 0.76793 1 7122 7122 5.7319 0 1 470600 37414 3617 25153 25169 36770 36770 0.0461712798901317 RELKSNPP 8 Unmodified _RELKSNPP_ 0 0 0 REV__ENSG00000176928|ENST00000652361|GCNT4 REV__ENSG00000176928|ENST00000652361|GCNT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.3132629394531 3 314.178536 939.513779 0.82165 0.00025814 -0.83717 -0.00026302 -0.015529 -4.8789E-06 314.17823502758523 25.331 2.219 23.682 22.056 24.275 -1.6482 169 63 3 0 0 0 0.752 1 4198 4198 6.7232 3.1267 1 5227000 + 37415 18528 25154 25170 36771 36771 0.04160303128992382 RELLFHVR 8 Unmodified _RELLFHVR_ 0 0 0 REV__TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant REV__TGFBRAP1|p.R743Afs*28|1|0.5|ENSG00000135966|chr2:105269451-105269451|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.0723571777344 3 357.213692 1068.61925 -0.033906 -1.2112E-05 -1.5362 -0.00054875 -1.5701 -0.00056086 357.213160764591 44.103 0.30949 41.337 41.185 41.495 -2.7661 12 8 2 0 0 0 1.0252 1 7995 7995 6.2058 0 1 698960 + 37416 16303 25155 25171 36772 36772 0.08768264045261276 RELPGFVNY 9 Unmodified _RELPGFVNY_ 0 0 0 ENST00000486275.1_1_21:42817479-42821257:+|nuORF;ENSG00000157601|ENST00000398598|MX1 ENST00000486275.1_1_21:42817479-42821257:+|nuORF ENST00000486275.1_1_21:42817479-42821257:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7671508789062 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 139.07 1 134.22 133.72 134.72 -4.8492 0 0 0 0.23508 1 26806 26806 6.7232 0 1 37417 5131 25156 25172 36773 36773 0.012608588175226032 RELQDRYV 8 Unmodified _RELQDRYV_ 0 0 0 ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;nc|ENSG00000196159|Q6V0I7-3|FAT4;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant;FAT4|p.E1154Gfs*9|1|0.43|ENSG00000196159|chr4:125319867-125319868|-/G|frameshift_variant;FAT4|p.D1128Tfs*8|1|0.12|ENSG00000196159|chr4:125319790-125319790|A/-|frameshift_variant ENSG00000196159|ENST00000394329|FAT4 ENSG00000196159|ENST00000394329|FAT4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.205078125 3 360.192845 1077.55671 NaN NaN NaN NaN NaN NaN NaN 37.067 1 34.729 34.229 35.229 -2.3375 0 0 0 0.21486 1 6550 6550 5.2969 3.2109 1 37418 7238 25157 25173 36774 36774 0.021030731864129848 RELVKNWVP 9 Unmodified _RELVKNWVP_ 0 0 0 ENSG00000127540|ENST00000591899|UQCR11 ENSG00000127540|ENST00000591899|UQCR11 ENSG00000127540|ENST00000591899|UQCR11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2227783203125 3 380.888986 1139.64513 -0.19927 -7.59E-05 0.6308 0.00024026 0.43153 0.00016436 380.8889628169778 94.643 0.63445 90.642 90.305 90.939 -4.0004 24 17 2 0 0 0 0.25495 1 18528 18528 34.222 25.777 1 1939600 37419 3482 25158 25174 36775 36775 0.08089113496885147 RELVKNWVP 9 Unmodified _RELVKNWVP_ 0 0 0 ENSG00000127540|ENST00000591899|UQCR11 ENSG00000127540|ENST00000591899|UQCR11 ENSG00000127540|ENST00000591899|UQCR11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2227478027344 3 380.888986 1139.64513 0.17557 6.6873E-05 -0.12639 -4.8141E-05 0.049179 1.8732E-05 380.8889120206221 94.669 0.59597 90.478 90.195 90.791 -4.1912 26 16 2 0 0 0 0.25495 1 18057 18057 34.222 26.066 1 1847100 37420 3482 25158 25174 36776 36776 0.08089113496885147 RELVKNWVP 9 Unmodified _RELVKNWVP_ 0 0 0 ENSG00000127540|ENST00000591899|UQCR11 ENSG00000127540|ENST00000591899|UQCR11 ENSG00000127540|ENST00000591899|UQCR11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21136474609375 3 380.888986 1139.64513 -0.64624 -0.00024615 0.56505 0.00021522 -0.081188 -3.0924E-05 380.88917227934513 94.4 0.55061 90.556 90.296 90.847 -3.844 25 15 2 0 0 0 0.35556 2 18105 18105;18112 28.234 19.257 1 2087700 37421 3482 25158 25174 36777;36778 36777 0.08089113496885147 RELVKNWVP 9 Unmodified _RELVKNWVP_ 0 0 0 ENSG00000127540|ENST00000591899|UQCR11 ENSG00000127540|ENST00000591899|UQCR11 ENSG00000127540|ENST00000591899|UQCR11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 570.7860717773438 2 570.82984 1139.64513 NaN NaN NaN NaN NaN NaN NaN 94.243 1 90.399 89.899 90.899 -3.844 0 0 0 0.16777 1 18079 18079 22.736 14.292 1 37422 3482 25158 25174 36779 36779 0.08089113496885147 RELVPQLSH 9 Unmodified _RELVPQLSH_ 0 0 0 REV__ENST00000398810.6_1_7:50659566-50659797:-|nuORF REV__ENST00000398810.6_1_7:50659566-50659797:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2117004394531 3 360.204974 1077.59309 -0.75647 -0.00027248 0.88631 0.00031925 0.12984 4.6769E-05 360.20528624877977 50.166 0.66856 47.159 46.74 47.408 -3.0068 34 19 2 0 0 0 0.48707 2 9249 9238;9249 20.415 3.3016 1 2702900 + 37423 21335 25159 25175 36780;36781 36781 0.057399500831252226 RELYELYFVF 10 Unmodified _RELYELYFVF_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;DNAH17|p.G2596Afs*13|1|0.33|ENSG00000187775|chr17:78479600-78479600|G/-|frameshift_variant;ENST00000586052.5_1_17:76475094-76487566:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2388610839844 3 460.239573 1377.69689 NaN NaN NaN NaN NaN NaN NaN 73.282 1 69.605 69.105 70.105 -3.6764 0 0 0 2.8426 1 13849 13849 3.8763 3.8125 1 37424 7127 25160 25176 36782 36782 0.023148124001181714 RELYRMFRKEH 11 Unmodified _RELYRMFRKEH_ 0 0 0 ENST00000528393.1_1_11:79699709-79699943:+|nuORF ENST00000528393.1_1_11:79699709-79699943:+|nuORF ENST00000528393.1_1_11:79699709-79699943:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.277099609375 3 522.277026 1563.80925 NaN NaN NaN NaN NaN NaN NaN 160.98 1 155.73 155.23 156.23 -5.2526 0 0 0 0.22632 1 31239 31239 3.0723 0.34026 1 37425 10935 25161 25177 36783 36783 0.04989762925333707 REMGDHWGY 9 Unmodified _REMGDHWGY_ 0 0 0 REV__ENST00000504610.2_1_11:112230824-112231043:+|nuORF REV__ENST00000504610.2_1_11:112230824-112231043:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 383.834228515625 3 384.162669 1149.46618 0.28553 0.00010969 0.92284 0.00035452 1.2084 0.00046421 384.49730178399153 67.185 0.60556 63.688 63.423 64.028 -3.4965 37 16 3 0 0 0 0.55728 1 12616 12616 0.40827 0 1 2828400 + 37426 22465 25162 25178 36784 36784 -0.10257719133483079 REMKPDPTP 9 Unmodified _REMKPDPTP_ 0 0 0 ENST00000487486.5_1_22:30188501-30200764:-|nuORF;nc|ENSG00000100325|Q9H1I8-3|ASCC2;ASCC2|p.R715Efs*40|1|0.04|ENSG00000100325|chr22:29789144-29789144|G/-|frameshift_variant;ENSG00000100325|ENST00000307790|ASCC2 ENST00000487486.5_1_22:30188501-30200764:-|nuORF ENST00000487486.5_1_22:30188501-30200764:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.55963134765625 3 357.51482 1069.52263 -0.27681 -9.8963E-05 0.25476 9.1079E-05 -0.02205 -7.8833E-06 357.5149032825805 20.625 0.88508 20.625 20.066 20.951 0 33 24 2 0 0 0 0.6748 1 3401 3401 7.9454 0.33645 1 897030 37427 231 25163 25179 36785 36785 -0.009350912968329794 REMKPDPTP 9 Unmodified _REMKPDPTP_ 0 0 0 ENST00000487486.5_1_22:30188501-30200764:-|nuORF;nc|ENSG00000100325|Q9H1I8-3|ASCC2;ASCC2|p.R715Efs*40|1|0.04|ENSG00000100325|chr22:29789144-29789144|G/-|frameshift_variant;ENSG00000100325|ENST00000307790|ASCC2 ENST00000487486.5_1_22:30188501-30200764:-|nuORF ENST00000487486.5_1_22:30188501-30200764:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.565673828125 3 357.51482 1069.52263 -0.13022 -4.6555E-05 0.24394 8.7213E-05 0.11372 4.0658E-05 357.51486821252513 22.164 1.3317 20.71 20.211 21.543 -1.4535 48 37 2 0 0 0 0.66754 1 3504 3504 8.4443 3.3968 1 968390 37428 231 25163 25179 36786 36786 -0.009350912968329794 REMPLLKSEVA 11 Unmodified _REMPLLKSEVA_ 0 0 0 nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000470611.5_1_1:11136930-11139812:-|nuORF;ENST00000474216.5_1_1:11137420-11140866:-|nuORF nc|ENSG00000171824|Q01780-2|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.251953125 3 424.904196 1271.69076 0.4198 0.00017838 -0.92372 -0.00039249 -0.50391 -0.00021412 424.90373061567055 77.486 0.96458 77.486 77.015 77.979 0 60 27 3 0 0 0 0.47027 4 15112 15004;15103;15112;15116 16.1 10.767 1 2432100 37429 6178 25164 25180 36787;36788;36789;36790 36789 0.06577970896978513 REMPLLKSEVA 11 Unmodified _REMPLLKSEVA_ 0 0 0 nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000470611.5_1_1:11136930-11139812:-|nuORF;ENST00000474216.5_1_1:11137420-11140866:-|nuORF nc|ENSG00000171824|Q01780-2|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2388000488281 3 424.904196 1271.69076 -0.13212 -5.6137E-05 -0.48256 -0.00020504 -0.61467 -0.00026118 424.90405683620077 80.746 0.94654 77.189 76.742 77.689 -3.557 68 26 4 0 0 0 0.67247 2 15724 15724;15830 13.622 9.7759 1 4344500 37430 6178 25164 25180 36791;36792 36791 0.06577970896978513 REMPLLKSEVA 11 Unmodified _REMPLLKSEVA_ 0 0 0 nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000470611.5_1_1:11136930-11139812:-|nuORF;ENST00000474216.5_1_1:11137420-11140866:-|nuORF nc|ENSG00000171824|Q01780-2|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2382507324219 3 424.904196 1271.69076 -0.024866 -1.0566E-05 -0.24622 -0.00010462 -0.27109 -0.00011519 425.23844272267286 81.148 0.91425 77.309 76.835 77.749 -3.8392 57 25 3 0 0 0 0.43543 1 15356 15356 29.419 18.354 1 3910400 37431 6178 25164 25180 36793 36793 0.06577970896978513 REMPLLKSEVA 11 Unmodified _REMPLLKSEVA_ 0 0 0 nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000470611.5_1_1:11136930-11139812:-|nuORF;ENST00000474216.5_1_1:11137420-11140866:-|nuORF nc|ENSG00000171824|Q01780-2|EXOSC10 nc|ENSG00000171824|Q01780-2|EXOSC10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2522888183594 3 424.904196 1271.69076 -0.47856 -0.00020334 -0.0035039 -1.4888E-06 -0.48206 -0.00020483 424.90408551888083 80.946 1.1542 77.258 76.753 77.907 -3.6879 70 32 3 0 0 0 0.5602 3 15457 15391;15457;15482 20.12 9.9693 1 3689000 37432 6178 25164 25180 36794;36795;36796 36795 0.06577970896978513 REMRRRVPKRW 11 Unmodified _REMRRRVPKRW_ 0 0 0 REV__ENST00000477976.5_1_1:892338-892489:-|nuORF REV__ENST00000477976.5_1_1:892338-892489:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6902465820312 3 523.97216 1568.89465 NaN NaN NaN NaN NaN NaN NaN 63.294 1 63.294 62.794 63.794 0 0 0 0 0.22632 1 12168 12168 0.026206 0.026206 1 + 37433 22129 25165 25181 36797 36797 0.13295972901642017 REMTILGSA 9 Unmodified _REMTILGSA_ 0 0 0 ENSG00000155304|ENST00000285667|HSPA13 ENSG00000155304|ENST00000285667|HSPA13 ENSG00000155304|ENST00000285667|HSPA13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.260498046875 2 489.257859 976.501166 0.43353 0.00021211 -0.50148 -0.00024535 -0.067951 -3.3245E-05 489.257652152626 82.279 0.84271 82.279 81.963 82.806 0 65 23 4 0 0 0 0.043105 3 16046 16003;16012;16046 74.2 32.36 1 49325000 37434 5042 25166 25182 36798;36799;36800 36800 0.011975236744547146 REMTILGSA 9 Unmodified _REMTILGSA_ 0 0 0 ENSG00000155304|ENST00000285667|HSPA13 ENSG00000155304|ENST00000285667|HSPA13 ENSG00000155304|ENST00000285667|HSPA13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2613525390625 2 489.257859 976.501166 0.072891 3.5662E-05 -0.13478 -6.5942E-05 -0.061888 -3.0279E-05 489.2578490682941 85.794 0.79523 82.13 81.746 82.542 -3.6641 67 21 5 0 0 0 0.043105 3 16770 16770;16778;16818 74.2 38.073 1 44308000 37435 5042 25166 25182 36801;36802;36803 36801 0.011975236744547146 REMTILGSA 9 Unmodified _REMTILGSA_ 0 0 0 ENSG00000155304|ENST00000285667|HSPA13 ENSG00000155304|ENST00000285667|HSPA13 ENSG00000155304|ENST00000285667|HSPA13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2605285644531 2 489.257859 976.501166 0.36523 0.00017869 -0.21791 -0.00010661 0.14733 7.208E-05 489.25775816436305 86.016 0.70255 82.065 81.734 82.436 -3.9503 60 19 4 0 0 0 0.066912 3 16358 16339;16358;16408 65.474 28.967 1 49280000 37436 5042 25166 25182 36804;36805;36806 36805 0.011975236744547146 REMTILGSA 9 Unmodified _REMTILGSA_ 0 0 0 ENSG00000155304|ENST00000285667|HSPA13 ENSG00000155304|ENST00000285667|HSPA13 ENSG00000155304|ENST00000285667|HSPA13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2617492675781 2 489.257859 976.501166 -0.19235 -9.4107E-05 0.2058 0.00010069 0.013458 6.5843E-06 489.2579231658264 85.82 0.9774 82.091 81.715 82.693 -3.7289 74 27 4 0 0 0 0.043105 3 16393 16382;16393;16442 74.2 32.36 1 34241000 37437 5042 25166 25182 36807;36808;36809 36808 0.011975236744547146 RENEHLLEVIP 11 Unmodified _RENEHLLEVIP_ 0 0 0 ENST00000552761.5_1_12:42726483-42768672:+|nuORF ENST00000552761.5_1_12:42726483-42768672:+|nuORF ENST00000552761.5_1_12:42726483-42768672:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.91436767578125 3 450.245498 1347.71466 0.30788 0.00013862 -0.33141 -0.00014921 -0.02353 -1.0594E-05 450.24534635648746 124.99 1.4447 120.23 119.59 121.04 -4.7681 126 40 5 0 0 0 0.22786 1 23927 23927 21.59 9.4154 1 52961000 37438 11198 25167 25183 36810 36810 0.05471527655004138 RENEHLLEVIP 11 Unmodified _RENEHLLEVIP_ 0 0 0 ENST00000552761.5_1_12:42726483-42768672:+|nuORF ENST00000552761.5_1_12:42726483-42768672:+|nuORF ENST00000552761.5_1_12:42726483-42768672:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 450.245498 1347.71466 0.038179 1.719E-05 -0.07769 -3.498E-05 -0.039511 -1.7789E-05 450.24547160404217 124.83 1.3356 120.23 119.49 120.83 -4.5984 -0.030757 0.00015742 NaN 21.59 125 37 5 NaN NaN NaN NaN 0 NaN NaN 0 60538000 37439 11198 25167 25183 0.05471527655004138 RENEHLLEVIP 11 Unmodified _RENEHLLEVIP_ 0 0 0 ENST00000552761.5_1_12:42726483-42768672:+|nuORF ENST00000552761.5_1_12:42726483-42768672:+|nuORF ENST00000552761.5_1_12:42726483-42768672:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 450.245498 1347.71466 0.16426 7.3956E-05 -0.17944 -8.0793E-05 -0.015183 -6.8363E-06 450.24543577791445 124.97 1.4123 120.32 119.64 121.05 -4.6495 0.062576 1.9984E-05 NaN 21.59 138 39 5 NaN NaN NaN NaN 0 NaN NaN 0 41172000 37440 11198 25167 25183 0.05471527655004138 RENKHFAAA 9 Unmodified _RENKHFAAA_ 0 0 0 ENSG00000118503|ENST00000612899|TNFAIP3 ENSG00000118503|ENST00000612899|TNFAIP3 ENSG00000118503|ENST00000612899|TNFAIP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2716674804688 2 522.27269 1042.53083 0.082375 4.3022E-05 -0.66464 -0.00034712 -0.58226 -0.0003041 522.272181498663 14.09 0.10987 14.09 14 14.109 0 4 2 2 0 0 0 0.45972 1 2079 2079 8.1555 7.7759 1 408980 37441 3039 25168 25184 36811 36811 0.01126223734809173 RENKVCQAF 9 Unmodified _RENKVCQAF_ 0 0 0 REV__IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant REV__IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 366.1842041015625 3 365.518564 1093.53386 -0.045534 -1.6644E-05 -0.30799 -0.00011258 -0.35353 -0.00012922 365.5184993035947 41.613 3.2205 38.962 37.143 40.363 -2.651 270 91 4 0 0 0 0.35556 1 7682 7682 12.241 0 1 52269000 + 37442 15311 25169 25185 36812 36812 -0.009162692027075536 RENKVCQAF 9 Unmodified _RENKVCQAF_ 0 0 0 REV__IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant REV__IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 365.518564 1093.53386 -0.097122 -3.55E-05 -0.21561 -7.8809E-05 -0.31273 -0.00011431 365.5185293160312 38.813 2.8739 38.813 37.192 40.066 0 -0.15241 -0.00018069 NaN 12.241 264 81 5 NaN NaN NaN NaN 0 NaN NaN 0 44092000 + 37443 15311 25169 25185 -0.009162692027075536 RENKVCQAF 9 Unmodified _RENKVCQAF_ 0 0 0 REV__IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant REV__IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 365.518564 1093.53386 -0.045534 -1.6644E-05 -0.30799 -0.00011258 -0.35353 -0.00012922 365.5184993035947 41.613 3.2205 38.962 37.143 40.363 -2.651 -0.004058 -0.000282 NaN 12.241 270 91 4 NaN NaN NaN NaN 0 NaN NaN 0 52269000 + 37444 15311 25169 25185 -0.009162692027075536 RENKVCQAF 9 Unmodified _RENKVCQAF_ 0 0 0 REV__IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant REV__IMPG1|p.N767Ifs*7|1|0.38|ENSG00000112706|chr6:75923650-75923650|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 365.518564 1093.53386 -0.64057 -0.00023414 0.25598 9.3567E-05 -0.38459 -0.00014057 365.5187127261577 41.497 3.3676 39.008 37.162 40.53 -2.4896 0.041863 0.00033644 NaN 12.241 310 95 5 NaN NaN NaN NaN 0 NaN NaN 0 39700000 + 37445 15311 25169 25185 -0.009162692027075536 RENLERVF 8 Unmodified _RENLERVF_ 0 0 0 PCED1A|p.G270Afs*21|1|0.08|ENSG00000132635|chr20:2838264-2838264|C/-|frameshift_variant;nc|ENSG00000132635|Q9H1Q7-3|PCED1A;nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000132635|ENST00000360652|PCED1A;ENST00000487501.2_1_20:2816687-2819560:-|nuORF PCED1A|p.G270Afs*21|1|0.08|ENSG00000132635|chr20:2838264-2838264|C/-|frameshift_variant PCED1A|p.G270Afs*21|1|0.08|ENSG00000132635|chr20:2838264-2838264|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2759399414062 2 531.788173 1061.56179 0.29645 0.00015765 -0.62997 -0.00033501 -0.33352 -0.00017736 531.7878297626704 82.857 1.0757 82.857 82.432 83.508 0 95 30 5 0 0 0 0.68128 1 16204 16204 16.942 0 1 114230000 37446 3750 25170 25186 36813 36813 0.03347377049044553 RENTAYIQA 9 Unmodified _RENTAYIQA_ 0 0 0 nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2830810546875 2 533.269813 1064.52507 0.23486 0.00012524 -0.15745 -8.3964E-05 0.077406 4.1278E-05 533.2696113440011 39.353 0.58526 39.353 39.059 39.644 0 43 16 3 0 0 0 0.15274 2 7300 7300;7354 43.772 11.026 1 5435300 37447 2472 25171 25187 36814;36815 36814 -0.004609195675357114 RENTAYIQA 9 Unmodified _RENTAYIQA_ 0 0 0 nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2866821289062 2 533.269813 1064.52507 -0.082584 -4.4039E-05 0.10522 5.611E-05 0.022635 1.2071E-05 533.2698127370397 41.989 0.82595 39.27 38.763 39.589 -2.7191 51 23 4 0 0 0 0.086396 4 7844 7815;7844;7860;7864 60.074 24.251 1 8064100 37448 2472 25171 25187 36816;36817;36818;36819 36817 -0.004609195675357114 RENTAYIQA 9 Unmodified _RENTAYIQA_ 0 0 0 nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2698364257812 2 533.269813 1064.52507 0.31345 0.00016715 -0.24552 -0.00013093 0.06793 3.6225E-05 533.26956849123 41.86 0.70728 39.209 38.829 39.537 -2.651 47 19 4 0 0 0 0.25976 1 7566 7566 22.621 15.143 1 7688900 37449 2472 25171 25187 36820 36820 -0.004609195675357114 RENTAYIQA 9 Unmodified _RENTAYIQA_ 0 0 0 nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2698364257812 2 533.269813 1064.52507 0.086318 4.6031E-05 0.025979 1.3854E-05 0.1123 5.9885E-05 533.2697427182956 41.818 0.83908 39.212 38.701 39.54 -2.606 50 23 3 0 0 0 0.10083 2 7519 7516;7519 55.503 27.012 1 6188700 37450 2472 25171 25187 36821;36822 36822 -0.004609195675357114 RENVDTFEA 9 Unmodified _RENVDTFEA_ 0 0 0 PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant;PRPF4B|p.K780Nfs*13|4|0.31|ENSG00000112739|chr6:4052741-4052741|A/-|frameshift_variant;ENSG00000112739|ENST00000337659|PRPF4B;ENST00000463634.6_1_6:4041126-4056780:+|nuORF;ENST00000490399.5_1_6:4041126-4044298:+|nuORF PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2648315429688 2 540.751453 1079.48835 0.046753 2.5282E-05 0.071878 3.8868E-05 0.11863 6.415E-05 540.7511363422811 51.089 1.1473 48.206 47.822 48.969 -2.8824 55 32 3 0 0 0 0.15889 2 9741 9683;9741 27.223 7.9662 1 3585400 37451 2708 25172 25188 36823;36824 36824 -0.04821216184086552 RENVDTFEA 9 Unmodified _RENVDTFEA_ 0 0 0 PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant;PRPF4B|p.K780Nfs*13|4|0.31|ENSG00000112739|chr6:4052741-4052741|A/-|frameshift_variant;ENSG00000112739|ENST00000337659|PRPF4B;ENST00000463634.6_1_6:4041126-4056780:+|nuORF;ENST00000490399.5_1_6:4041126-4044298:+|nuORF PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2709350585938 2 540.751453 1079.48835 0.019036 1.0294E-05 -0.076005 -4.11E-05 -0.056969 -3.0806E-05 540.7513024450427 51.181 0.59622 48.129 47.784 48.38 -3.0517 25 16 2 0 0 0 0.17734 1 9442 9442 40.239 11.158 1 2072400 37452 2708 25172 25188 36825 36825 -0.04821216184086552 RENVVALA 8 Unmodified _RENVVALA_ 0 0 0 ENST00000272983.12_1_2:242089243-242089768:+|nuORF ENST00000272983.12_1_2:242089243-242089768:+|nuORF ENST00000272983.12_1_2:242089243-242089768:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2189636230469 2 436.253434 870.492316 -0.23775 -0.00010372 0.31501 0.00013743 0.077261 3.3705E-05 436.25351677155294 52.265 0.90381 49.169 48.649 49.553 -3.0954 59 25 3 0 0 0 8448 2 9607 9607;9649 39.213 16.477 1 8236100 37453 8413 25173 25189 36826;36827 36826 0.05188918100270712 REPKPRKLRL 10 Unmodified _REPKPRKLRL_ 0 0 0 REV__ENST00000573209.1_1_17:7350776-7358776:+|nuORF REV__ENST00000573209.1_1_17:7350776-7358776:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 646.8963012695312 2 646.917313 1291.82007 NaN NaN NaN NaN NaN NaN NaN 165.44 1 160.46 159.96 160.96 -4.9811 0 0 0 2.8426 1 32337 32337 0.0013812 0 1 + 37454 18145 25174 25190 36828 36828 0.1858353336192522 REPMREYP 8 Unmodified _REPMREYP_ 0 0 0 nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3;ENST00000561483.5_1_15:84323016-84694242:+|nuORF;ADAMTSL3|p.N1166Kfs*26|1|0.4|ENSG00000156218|chr15:83983119-83983120|-/A|frameshift_variant;ADAMTSL3|p.F1172Yfs*20|1|0.12|ENSG00000156218|chr15:83983142-83983143|-/A|frameshift_variant;ADAMTSL3|p.R1207Gfs*32|1|0.3|ENSG00000156218|chr15:83983243-83983243|A/-|frameshift_variant;ADAMTSL3|p.H1300Ifs*18|1|0.33|ENSG00000156218|chr15:83991138-83991138|C/-|frameshift_variant nc|ENSG00000156218|P82987-2|ADAMTSL3 nc|ENSG00000156218|P82987-2|ADAMTSL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2021179199219 3 359.843048 1076.50731 -0.6499 -0.00023386 0.42507 0.00015296 -0.22483 -8.0903E-05 359.8432551304613 41.758 0.94882 39.152 38.592 39.54 -2.606 87 26 5 0 0 0 0.73402 1 7411 7411 9.3831 2.66 1 33578000 37455 5080 25175 25191 36829 36829 -0.02787958094017995 REPRSQDRRRQ 11 Unmodified _REPRSQDRRRQ_ 0 0 0 nc|ENSG00000084693|Q8NDL9-2|AGBL5;AGBL5|p.R813Gfs*68|1|0.4|ENSG00000084693|chr2:27069649-27069649|C/-|frameshift_variant;ENSG00000084693|ENST00000360131|AGBL5 nc|ENSG00000084693|Q8NDL9-2|AGBL5 nc|ENSG00000084693|Q8NDL9-2|AGBL5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3995361328125 2 742.401078 1482.7876 NaN NaN NaN NaN NaN NaN NaN 70.336 1 70.336 69.836 70.836 0 0 0 0 0.23698 1 13622 13622 2.4985 0.21571 1 37456 94 25176 25192 36830 36830 0.06552094220955951 REPSDPSQC 9 Unmodified _REPSDPSQC_ 0 0 0 SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant;SPAG17|p.L1608Ifs*4|1|0.34|ENSG00000155761|chr1:117996698-117996699|-/T|frameshift_variant;SPAG17|p.T1729Lfs*21|2|0.43|ENSG00000155761|chr1:117992642-117992642|T/-|frameshift_variant;ENSG00000155761|ENST00000336338|SPAG17 SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 340.8147888183594 3 340.146796 1017.41856 0.33598 0.00011428 0.37995 0.00012924 0.71593 0.00024352 340.14685095986067 29.373 0.46002 27.48 27.191 27.651 -1.8928 29 12 3 0 0 0 0.45972 1 4978 4978 8.1555 1.9497 1 1237100 37457 5062 25177 25193 36831 36831 -0.08945418124358184 REPSDPSQC 9 Unmodified _REPSDPSQC_ 0 0 0 SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant;SPAG17|p.L1608Ifs*4|1|0.34|ENSG00000155761|chr1:117996698-117996699|-/T|frameshift_variant;SPAG17|p.T1729Lfs*21|2|0.43|ENSG00000155761|chr1:117992642-117992642|T/-|frameshift_variant;ENSG00000155761|ENST00000336338|SPAG17 SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 340.146796 1017.41856 0.346 0.00011769 0.3822 0.00013 0.7282 0.00024769 340.14686817838356 29.431 0.4259 27.475 27.263 27.689 -1.9561 -0.019034 -0.0002504 NaN 8.1555 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1069900 37458 5062 25177 25193 -0.08945418124358184 REPSDPSQC 9 Unmodified _REPSDPSQC_ 0 0 0 SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant;SPAG17|p.L1608Ifs*4|1|0.34|ENSG00000155761|chr1:117996698-117996699|-/T|frameshift_variant;SPAG17|p.T1729Lfs*21|2|0.43|ENSG00000155761|chr1:117992642-117992642|T/-|frameshift_variant;ENSG00000155761|ENST00000336338|SPAG17 SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 340.146796 1017.41856 -0.21199 -7.2107E-05 0.89556 0.00030462 0.68357 0.00023252 340.14704000145827 29.481 0.45286 27.407 27.137 27.59 -2.0743 -0.087557 0.00027345 NaN 8.1555 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1052500 37459 5062 25177 25193 -0.08945418124358184 REPTTPPL 8 Unmodified _REPTTPPL_ 0 0 0 REV__nc|ENSG00000168743|Q6UXI9-2|NPNT REV__nc|ENSG00000168743|Q6UXI9-2|NPNT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 305.1854553222656 3 304.17127 909.491981 0.22236 6.7635E-05 -0.27436 -8.3452E-05 -0.051998 -1.5816E-05 304.17115782662324 65.049 0.66819 61.591 61.225 61.893 -3.4581 47 18 3 0 0 0 8448 1 12144 12144 6.2058 1.3088 1 8727800 + 37460 18048 25178 25194 36832 36832 0.03361498380422745 REQAPDIS 8 Unmodified _REQAPDIS_ 0 0 0 SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.I2020Nfs*4|1|0.32|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant;SETX|p.S1600*|1|0.07|ENSG00000107290|chr9:132326800-132326801|-/A|frameshift_variant;SETX|p.F1748Sfs*3|1|0.55|ENSG00000107290|chr9:132326355-132326355|A/-|frameshift_variant;SETX|p.G1134Efs*24|1|0.34|ENSG00000107290|chr9:132328199-132328199|T/-|frameshift_variant;SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant;SETX|p.N1361Ifs*53|1|0.11|ENSG00000107290|chr9:132327516-132327516|T/-|frameshift_variant SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2252502441406 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 19.38 1 17.983 17.483 18.483 -1.3966 0 0 0 0.23312 1 3191 3191 6.2058 1.3088 1 37461 2419 25179 25195 36833 36833 -0.0148856652166387 REQDQSFTA 9 Unmodified _REQDQSFTA_ 0 0 0 ENST00000342222.6_1_8:42151073-42188494:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB ENST00000342222.6_1_8:42151073-42188494:+|nuORF ENST00000342222.6_1_8:42151073-42188494:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2589721679688 2 541.249077 1080.4836 0.3698 0.00020016 1.5502 0.00083905 1.92 0.0010392 541.2488886277918 26.392 0.51271 26.392 26.156 26.668 0 33 14 3 0 0 0 0.81359 1 4654 4654 16.149 0 1 1471200 37462 2232 25180 25196 36834 36834 -0.0534210032685678 REQEELLAP 9 Unmodified _REQEELLAP_ 0 0 0 ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP ENSG00000025708|ENST00000252029|TYMP ENSG00000025708|ENST00000252029|TYMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7879028320312 2 542.785296 1083.55604 0.20368 0.00011056 0.095383 5.1772E-05 0.29907 0.00016233 542.7852127795876 71.273 0.94194 71.273 70.8 71.742 0 84 26 5 0 0 0 0.46796 2 13772 13772;13825 21.59 7.1848 1 40074000 37463 1140 25181 25197 36835;36836 36835 0.017602337466996687 REQEELLAP 9 Unmodified _REQEELLAP_ 0 0 0 ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP ENSG00000025708|ENST00000252029|TYMP ENSG00000025708|ENST00000252029|TYMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7879028320312 2 542.785296 1083.55604 0.15022 8.1538E-05 0.12407 6.7344E-05 0.27429 0.00014888 542.7851768188826 74.486 0.91499 71.121 70.675 71.59 -3.3643 102 25 6 0 0 0 0.33094 2 14508 14464;14508 29.841 2.9569 1 32103000 37464 1140 25181 25197 36837;36838 36838 0.017602337466996687 REQEELLAP 9 Unmodified _REQEELLAP_ 0 0 0 ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP ENSG00000025708|ENST00000252029|TYMP ENSG00000025708|ENST00000252029|TYMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7880249023438 2 542.785296 1083.55604 0.17952 9.7443E-05 0.14626 7.9388E-05 0.32578 0.00017683 542.7851323107828 74.84 0.96928 71.163 70.656 71.626 -3.6764 111 27 6 0 0 0 0.12612 1 14131 14131 47.594 9.4188 1 23902000 37465 1140 25181 25197 36839 36839 0.017602337466996687 REQEELLAP 9 Unmodified _REQEELLAP_ 0 0 0 ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP ENSG00000025708|ENST00000252029|TYMP ENSG00000025708|ENST00000252029|TYMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7882080078125 2 542.785296 1083.55604 0.41132 0.00022326 -0.43663 -0.000237 -0.025311 -1.3739E-05 542.7850222995113 74.705 1.0031 71.111 70.607 71.61 -3.594 86 28 4 0 0 0 0.10083 5 14182 14138;14180;14182;14229;14232 55.503 26.94 1 33306000 37466 1140 25181 25197 36840;36841;36842;36843;36844 36842 0.017602337466996687 REQEPARRV 9 Unmodified _REQEPARRV_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21368408203125 3 380.879261 1139.61595 -0.67459 -0.00025694 0.6991 0.00026627 0.024508 9.3346E-06 380.8795185457435 13.667 0.34357 12.494 12.346 12.69 -1.173 20 9 3 0 0 0 0.48437 1 1792 1792 20.581 9.7814 1 546170 37467 528 25182 25198 36845 36845 0.0517296920058925 REQEPARRV 9 Unmodified _REQEPARRV_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 380.879261 1139.61595 -0.26686 -0.00010164 0.38664 0.00014726 0.11978 4.5622E-05 380.8793627309975 12.975 0.30579 12.975 12.861 13.167 0 0.26641 -0.00033587 NaN 20.581 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1304300 37468 528 25182 25198 0.0517296920058925 REQEPARRV 9 Unmodified _REQEPARRV_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.879261 1139.61595 -0.87999 -0.00033517 0.97842 0.00037266 0.098438 3.7493E-05 380.87960158966644 13.666 0.24988 12.656 12.553 12.803 -1.0098 -0.052268 0.00034032 NaN 20.581 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1109900 37469 528 25182 25198 0.0517296920058925 REQFFEIP 8 Unmodified _REQFFEIP_ 0 0 0 nc|ENSG00000153982|Q8N9F7-3|GDPD1;nc|ENSG00000153982|Q8N9F7-2|GDPD1;ENSG00000153982|ENST00000284116|GDPD1 nc|ENSG00000153982|Q8N9F7-3|GDPD1 nc|ENSG00000153982|Q8N9F7-3|GDPD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.273193359375 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 49.637 1 49.637 49.137 50.137 0 0 0 0 0.23312 1 9387 9387 6.2058 6.1419 1 37470 4989 25183 25199 36846 36846 -0.0005883007379452465 REQIDFLAA 9 Unmodified _REQIDFLAA_ 0 0 0 ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2725830078125 2 531.782556 1061.55056 0.082529 4.3887E-05 0.053087 2.8231E-05 0.13562 7.2118E-05 531.7825542921472 117.89 1.1598 117.89 117.38 118.54 0 107 32 4 0 0 0 0.61228 2 23161 23161;23170 12.241 2.8575 1 123050000 37471 1901 25184 25200 36847;36848 36847 0.022245549548870258 REQIDFLAA 9 Unmodified _REQIDFLAA_ 0 0 0 ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2869262695312 2 531.782556 1061.55056 0.36801 0.0001957 -0.16786 -8.9264E-05 0.20016 0.00010644 531.7824612152793 122.03 1.3945 117.5 117.08 118.47 -4.5305 123 38 5 0 0 0 0.21532 1 23521 23521 36.506 2.4038 1 117570000 37472 1901 25184 25200 36849 36849 0.022245549548870258 REQKKMLL 8 Unmodified _REQKKMLL_ 0 0 0 ENST00000465733.5_1_2:260594-263276:-|nuORF ENST00000465733.5_1_2:260594-263276:-|nuORF ENST00000465733.5_1_2:260594-263276:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.685302734375 2 523.312969 1044.61138 NaN NaN NaN NaN NaN NaN NaN 92.783 1 92.783 92.283 93.283 0 0 0 0 0.21486 1 18143 18143 7.9102 0 1 37473 10126 25185 25201 36850 36850 0.09086368733505878 REQPIFSTR 9 Unmodified _REQPIFSTR_ 0 0 0 ENST00000599808.1_1_19:19049437-19049791:-|nuORF;nc|ENSG00000051128|Q9NSC5-4|HOMER3;nc|ENSG00000051128|Q9NSC5-3|HOMER3;nc|ENSG00000051128|Q9NSC5-5|HOMER3;nc|ENSG00000051128|Q9NSC5-2|HOMER3;ENSG00000051128|ENST00000392351|HOMER3 ENST00000599808.1_1_19:19049437-19049791:-|nuORF ENST00000599808.1_1_19:19049437-19049791:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.23443603515625 3 378.540245 1132.59891 -0.19021 -7.2004E-05 0.16032 6.0689E-05 -0.029889 -1.1314E-05 378.5402125955763 18.969 1.9218 18.969 17.803 19.725 0 133 54 4 0 0 0 0.54058 1 2970 2970 12.241 0 1 4893800 37474 1246 25186 25202 36851 36851 0.03791048594803215 REQPIFSTR 9 Unmodified _REQPIFSTR_ 0 0 0 ENST00000599808.1_1_19:19049437-19049791:-|nuORF;nc|ENSG00000051128|Q9NSC5-4|HOMER3;nc|ENSG00000051128|Q9NSC5-3|HOMER3;nc|ENSG00000051128|Q9NSC5-5|HOMER3;nc|ENSG00000051128|Q9NSC5-2|HOMER3;ENSG00000051128|ENST00000392351|HOMER3 ENST00000599808.1_1_19:19049437-19049791:-|nuORF ENST00000599808.1_1_19:19049437-19049791:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 378.540245 1132.59891 0.069907 2.6463E-05 -0.21014 -7.9546E-05 -0.14023 -5.3083E-05 378.5401417855585 20.576 1.362 19.18 18.276 19.638 -1.3966 0.13279 -0.000247 NaN 12.241 96 38 3 NaN NaN NaN NaN 0 NaN NaN 0 4671000 37475 1246 25186 25202 0.03791048594803215 REQQPTIS 8 Unmodified _REQQPTIS_ 0 0 0 REV__ENST00000564902.5_1_15:30927763-30936864:+|nuORF REV__ENST00000564902.5_1_15:30927763-30936864:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.169921875 3 320.169929 957.487959 NaN NaN NaN NaN NaN NaN NaN 92.514 1 88.588 88.088 89.088 -3.9251 0 0 0 0.21486 1 18120 18120 1.6526 0 1 + 37476 23101 25187 25203 36852 36852 0.00751408886731042 REQVVKSYA 9 Unmodified _REQVVKSYA_ 0 0 0 REV__ENSG00000131238|ENST00000642050|PPT1 REV__ENSG00000131238|ENST00000642050|PPT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20361328125 3 360.532979 1078.57711 -0.46773 -0.00016863 0.28808 0.00010386 -0.17964 -6.4768E-05 360.53304706670093 17 0.38643 15.728 15.588 15.974 -1.2722 25 10 4 0 0 0 0.8606 1 2505 2505 7.1017 0 1 1964400 + 37477 16062 25188 25204 36853 36853 0.04096243846242942 REQVVKSYA 9 Unmodified _REQVVKSYA_ 0 0 0 REV__ENSG00000131238|ENST00000642050|PPT1 REV__ENSG00000131238|ENST00000642050|PPT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 360.532979 1078.57711 -0.33138 -0.00011947 -0.17535 -6.3219E-05 -0.50673 -0.00018269 360.5329374909781 15.889 0.55693 15.889 15.572 16.129 0 0.089027 -0.00033501 NaN 7.1017 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3065300 + 37478 16062 25188 25204 0.04096243846242942 REQVVKSYA 9 Unmodified _REQVVKSYA_ 0 0 0 REV__ENSG00000131238|ENST00000642050|PPT1 REV__ENSG00000131238|ENST00000642050|PPT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 360.532979 1078.57711 -0.56312 -0.00020302 0.24459 8.8183E-05 -0.31853 -0.00011484 360.53306467215987 16.998 0.2426 15.782 15.636 15.878 -1.2159 -0.017554 0.00011919 NaN 7.1017 16 6 3 NaN NaN NaN NaN 0 NaN NaN 0 2852500 + 37479 16062 25188 25204 0.04096243846242942 RERAARNG 8 Unmodified _RERAARNG_ 0 0 0 REV__ENST00000303375.9_1_17:60704781-60704880:+|nuORF REV__ENST00000303375.9_1_17:60704781-60704880:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2523498535156 2 465.254831 928.49511 NaN NaN NaN NaN NaN NaN NaN 19.401 1 17.766 17.266 18.266 -1.6351 0 0 0 0.23664 1 2926 2926 3.2813 2.6545 1 + 37480 20419 25189 25205 36854 36854 0.028001862777955466 RERDRERYIYI 11 Unmodified _RERDRERYIYI_ 0 0 0 REV__ENST00000512145.1_1_6:18237336-18256602:-|nuORF REV__ENST00000512145.1_1_6:18237336-18256602:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3864135742188 2 784.918238 1567.82192 NaN NaN NaN NaN NaN NaN NaN 42.733 1 40.013 39.513 40.513 -2.7191 0 0 0 0.22632 1 7999 7999 0.50596 0.50596 1 + 37481 22554 25190 25206 36855 36855 0.060724975892526345 REREALEY 8 Unmodified _REREALEY_ 0 0 0 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2698364257812 2 533.269813 1064.52507 -0.25243 -0.00013461 0.38908 0.00020748 0.13665 7.287E-05 533.2699197112412 35.568 0.42946 33.175 32.952 33.381 -2.3938 21 11 2 0 0 0 8448 1 6550 6550 34.102 19.264 1 1448000 37482 4254 25191 25207 36856 36856 -0.004609195675357114 REREALEY 8 Unmodified _REREALEY_ 0 0 0 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 533.269813 1064.52507 0.5306 0.00028295 0.069236 3.6922E-05 0.59983 0.00031987 533.2695966285997 35.409 0.4142 33.157 32.985 33.399 -2.2527 23 11 3 0 0 0 8448 1 6271 6271 14.838 2.5976 1 1294900 37483 4254 25191 25207 36857 36857 -0.004609195675357114 REREALEY 8 Unmodified _REREALEY_ 0 0 0 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2702026367188 2 533.269813 1064.52507 0.37186 0.0001983 -0.07034 -3.751E-05 0.30152 0.00016079 533.2696417282177 35.472 0.52522 33.195 32.895 33.42 -2.2766 28 14 3 0 0 0 8448 1 6246 6246 36.506 21.668 1 1266500 37484 4254 25191 25207 36858 36858 -0.004609195675357114 RERECEHGY 9 Unmodified _RERECEHGY_ 0 0 0 ENST00000460667.5_1_10:111985902-112004616:+|nuORF;nc|ENSG00000119950|P50539|MXI1 ENST00000460667.5_1_10:111985902-112004616:+|nuORF ENST00000460667.5_1_10:111985902-112004616:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.2909240722656 3 393.505095 1177.49345 -0.34605 -0.00013617 -0.0022109 -8.6998E-07 -0.34826 -0.00013704 393.5050721546346 42.332 0.31853 39.613 39.414 39.733 -2.7191 13 8 2 0 0 0 0.8799 1 7898 7898 4.897 3.7037 1 2602100 37485 10056 25192 25208 36859 36859 -0.08819235593114172 RERECEHGY 9 Unmodified _RERECEHGY_ 0 0 0 ENST00000460667.5_1_10:111985902-112004616:+|nuORF;nc|ENSG00000119950|P50539|MXI1 ENST00000460667.5_1_10:111985902-112004616:+|nuORF ENST00000460667.5_1_10:111985902-112004616:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 393.505095 1177.49345 -0.069106 -2.7193E-05 -0.7451 -0.0002932 -0.81421 -0.0003204 393.5048505259269 42.254 0.35348 39.603 39.39 39.744 -2.651 -0.0051884 -0.00034113 NaN 4.897 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2489500 37486 10056 25192 25208 -0.08819235593114172 REREQWPRGR 10 Unmodified _REREQWPRGR_ 0 0 0 REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|50|1|anti-sense REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|50|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 457.2448425292969 3 457.244714 1368.71231 NaN NaN NaN NaN NaN NaN NaN 96.019 1 91.828 91.328 92.328 -4.1911 0 0 0 2.8426 1 18331 18331 3.8763 3.7043 1 + 37487 24754 25193 25209 36860 36860 0.04270536760532195 REREREYERDQ 11 Unmodified _REREREYERDQ_ 0 0 0 nc|ENSG00000125351|Q9BZI7-2|UPF3B;ENSG00000125351|ENST00000276201|UPF3B nc|ENSG00000125351|Q9BZI7-2|UPF3B nc|ENSG00000125351|Q9BZI7-2|UPF3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2805786132812 3 522.585353 1564.73423 0.093366 4.8792E-05 0.73465 0.00038392 0.82802 0.00043271 522.5856610218302 15.035 0.17381 15.035 14.914 15.087 0 7 4 2 0 0 0 0.96185 1 2274 2274 3.5927 3.1844 1 621020 37488 3352 25194 25210 36861 36861 -0.025547480722252658 RERERQRREWE 11 Unmodified _RERERQRREWE_ 0 0 0 REV__ZC3H18|p.R427W|1|0.37|ENSG00000158545|chr16:88611340-88611340|C/T|missense_variant REV__ZC3H18|p.R427W|1|0.37|ENSG00000158545|chr16:88611340-88611340|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7791748046875 3 543.948737 1628.82438 NaN NaN NaN NaN NaN NaN NaN 129.55 1 129.55 129.05 130.05 0 0 0 0 0.23698 1 25592 25592 0.32927 0 1 + 37489 25556 25195 25211 36862 36862 0.03512346046886705 RERFSLLSA 9 Unmodified _RERFSLLSA_ 0 0 0 nc|ENSG00000168077|Q6AZY7-2|SCARA3;ENSG00000168077|ENST00000301904|SCARA3 nc|ENSG00000168077|Q6AZY7-2|SCARA3 nc|ENSG00000168077|Q6AZY7-2|SCARA3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20477294921875 3 360.204974 1077.59309 NaN NaN NaN NaN NaN NaN NaN 80.865 1 77.308 76.808 77.808 -3.557 0 0 0 0.23508 1 15788 15788 8.9762 0 1 37490 5879 25196 25212 36863 36863 0.0573995008314796 RERGTPVQ 8 Unmodified _RERGTPVQ_ 0 0 0 REV__MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant REV__MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.3131408691406 3 314.842036 941.504277 -0.1583 -4.984E-05 0.013142 4.1376E-06 -0.14516 -4.5702E-05 314.84205133902884 19.406 0.42857 18.01 17.813 18.242 -1.3966 27 11 3 0 0 0 1.0278 1 3174 3174 1.4819 0 1 9380200 + 37491 16387 25197 25213 36864 36864 0.031185348434860316 RERHIREQERR 11 Unmodified _RERHIREQERR_ 0 0 0 REV__SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant REV__SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2717895507812 3 522.289094 1563.84545 NaN NaN NaN NaN NaN NaN NaN 122.28 1 117.6 117.1 118.1 -4.6873 0 0 0 0.22632 1 23481 23481 0.50596 0 1 + 37492 17425 25198 25214 36865 36865 0.08608356146396545 RERKGLITA 9 Unmodified _RERKGLITA_ 0 0 0 ENSG00000115339|ENST00000392701|GALNT3 ENSG00000115339|ENST00000392701|GALNT3 ENSG00000115339|ENST00000392701|GALNT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2691650390625 2 522.31964 1042.62473 0.19696 0.00010288 -0.70652 -0.00036903 -0.50956 -0.00026615 522.3193948999641 21.664 0.30986 21.664 21.46 21.77 0 14 8 2 0 0 0 0.35556 1 3606 3606 12.241 4.0851 1 901630 37493 2848 25199 25215 36866 36866 0.10511942837092647 RERKRKKRRI 10 Unmodified _RERKRKKRRI_ 0 0 0 GPANK1|p.W268Lfs*12|1|0.22|ENSG00000204438|chr6:31662536-31662537|-/C|frameshift_variant;ENSG00000204438|ENST00000375896|GPANK1 GPANK1|p.W268Lfs*12|1|0.22|ENSG00000204438|chr6:31662536-31662537|-/C|frameshift_variant GPANK1|p.W268Lfs*12|1|0.22|ENSG00000204438|chr6:31662536-31662537|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.0731506347656 4 357.239193 1424.92767 0.12055 4.3067E-05 -1.3075 -0.0004671 -1.187 -0.00042403 357.4901994854843 36.574 0.2729 34.226 34.073 34.346 -2.3479 9 7 2 0 0 0 0.91149 1 6440 6440 0.62683 0.21856 1 337590 37494 7579 25200 25216 36867 36867 0.23219923016017674 RERKVKMKKK 10 Unmodified _RERKVKMKKK_ 0 0 0 REV__nc|ENSG00000144029|P82675-2|MRPS5 REV__nc|ENSG00000144029|P82675-2|MRPS5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 443.763671875 3 444.286974 1329.83909 -0.093396 -4.1495E-05 -0.30115 -0.0001338 -0.39455 -0.00017529 444.2868891751425 94.81 0.53246 90.76 90.394 90.926 -4.0496 21 14 2 0 0 0 1.1335 1 18604 18604 1.9275 1.3422 1 3063500 + 37495 16764 25201 25217 36868 36868 0.18736746661306825 RERKVKMKKK 10 Unmodified _RERKVKMKKK_ 0 0 0 REV__nc|ENSG00000144029|P82675-2|MRPS5 REV__nc|ENSG00000144029|P82675-2|MRPS5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 444.286974 1329.83909 0.031388 1.3945E-05 -0.22957 -0.000102 -0.19819 -8.8051E-05 444.2868579565869 90.853 0.49342 90.853 90.651 91.144 0 0.13487 0.00019528 NaN 1.9275 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1988800 + 37496 16764 25201 25217 0.18736746661306825 RERKVKMKKK 10 Unmodified _RERKVKMKKK_ 0 0 0 REV__nc|ENSG00000144029|P82675-2|MRPS5 REV__nc|ENSG00000144029|P82675-2|MRPS5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 444.286974 1329.83909 0.12696 5.6404E-05 -0.58991 -0.00026209 -0.46296 -0.00020569 444.28671879407744 94.809 0.42123 90.618 90.404 90.825 -4.1912 -0.099878 -0.000285 NaN 1.9275 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2055900 + 37497 16764 25201 25217 0.18736746661306825 RERKVKMKKK 10 Unmodified _RERKVKMKKK_ 0 0 0 REV__nc|ENSG00000144029|P82675-2|MRPS5 REV__nc|ENSG00000144029|P82675-2|MRPS5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 444.286974 1329.83909 -0.093943 -4.1738E-05 -0.33314 -0.00014801 -0.42708 -0.00018975 444.2867620577018 94.485 0.48967 90.641 90.428 90.918 -3.844 -0.076802 5.7248E-05 NaN 1.9275 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2027800 + 37498 16764 25201 25217 0.18736746661306825 RERLYEPL 8 Unmodified _RERLYEPL_ 0 0 0 REV__nc|ENSG00000198797|Q9C0B6-2|BRINP2 REV__nc|ENSG00000198797|Q9C0B6-2|BRINP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20361328125 3 359.201341 1074.58219 -0.46558 -0.00016724 0.6476 0.00023262 0.18202 6.5383E-05 359.2015768760706 16.894 2.329 15.622 14.804 17.133 -1.2722 197 67 4 0 0 0 0.72935 1 2505 2505 10.074 0 1 10332000 + 37499 19452 25202 25218 36869 36869 0.047885477088584594 RERPPEEVAA 10 Unmodified _RERPPEEVAA_ 0 0 0 nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF nc|ENSG00000132305|Q16891-2|IMMT nc|ENSG00000132305|Q16891-2|IMMT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 385.5380859375 3 385.203522 1152.58874 -0.023914 -9.2117E-06 -0.42938 -0.0001654 -0.4533 -0.00017461 385.20358534158515 23.88 2.2197 22.346 21.807 24.027 -1.5342 179 63 5 0 0 0 1.1218 1 4151 4151 10.151 9.3056 1 212010000 37500 3714 25203 25219 36870 36870 0.01854440869578866 RERPPEEVAA 10 Unmodified _RERPPEEVAA_ 0 0 0 nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF nc|ENSG00000132305|Q16891-2|IMMT nc|ENSG00000132305|Q16891-2|IMMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 385.203522 1152.58874 -0.1012 -3.8984E-05 -0.22465 -8.6536E-05 -0.32585 -0.00012552 385.20359566638353 22.429 1.4979 22.429 21.875 23.372 0 0.023464 0.00041144 NaN 10.151 155 42 6 NaN NaN NaN NaN 0 NaN NaN 0 180460000 37501 3714 25203 25219 0.01854440869578866 RERPPEEVAA 10 Unmodified _RERPPEEVAA_ 0 0 0 nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF nc|ENSG00000132305|Q16891-2|IMMT nc|ENSG00000132305|Q16891-2|IMMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 385.203522 1152.58874 0.69527 0.00026782 -1.0932 -0.00042112 -0.39798 -0.0001533 385.20328566829596 23.996 1.6657 22.443 21.94 23.606 -1.5532 0.036581 -0.00059232 NaN 10.151 152 47 5 NaN NaN NaN NaN 0 NaN NaN 0 173610000 37502 3714 25203 25219 0.01854440869578866 RERRERERIRI 11 Unmodified _RERRERERIRI_ 0 0 0 nc|ENSG00000137776|Q9NWH9-3|SLTM;ENSG00000137776|ENST00000380516|SLTM nc|ENSG00000137776|Q9NWH9-3|SLTM nc|ENSG00000137776|Q9NWH9-3|SLTM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.697265625 3 523.644989 1567.91314 NaN NaN NaN NaN NaN NaN NaN 64.572 1 61.575 61.075 62.075 -2.9975 0 0 0 0.23698 1 12490 12490 0.50596 0.41111 1 37503 4109 25204 25220 36871 36871 0.15189806077205503 RERRERERIRI 11 Unmodified _RERRERERIRI_ 0 0 0 nc|ENSG00000137776|Q9NWH9-3|SLTM;ENSG00000137776|ENST00000380516|SLTM nc|ENSG00000137776|Q9NWH9-3|SLTM nc|ENSG00000137776|Q9NWH9-3|SLTM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.693359375 3 523.644989 1567.91314 NaN NaN NaN NaN NaN NaN NaN 141.12 1 136.13 135.63 136.63 -4.9877 0 0 0 0.22632 1 27171 27171 0.50596 0.33396 1 37504 4109 25204 25220 36872 36872 0.15189806077205503 RERRERERIRI 11 Unmodified _RERRERERIRI_ 0 0 0 nc|ENSG00000137776|Q9NWH9-3|SLTM;ENSG00000137776|ENST00000380516|SLTM nc|ENSG00000137776|Q9NWH9-3|SLTM nc|ENSG00000137776|Q9NWH9-3|SLTM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6876220703125 3 523.644989 1567.91314 0.04156 2.1763E-05 -2.9637 -0.0015519 -2.9221 -0.0015301 523.9761520990007 78.563 0.17618 74.904 74.765 74.941 -3.6588 5 4 2 0 0 0 0.89134 1 14952 14952 0.094841 0 1 689520 37505 4109 25204 25220 36873 36873 0.15189806077205503 RERRNYRRRRC 11 Unmodified _RERRNYRRRRC_ 0 0 0 ENST00000371361.3_1_10:96112804-96114802:-|nuORF ENST00000371361.3_1_10:96112804-96114802:-|nuORF ENST00000371361.3_1_10:96112804-96114802:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2831420898438 3 540.966068 1619.87638 0.27374 0.00014808 -1.3593 -0.00073534 -1.0856 -0.00058725 540.9650528813389 165.85 0.13777 160.87 160.77 160.91 -4.9811 5 3 2 0 0 0 0.82503 1 32450 32450 0.08335 0.018944 1 8504900 37506 9158 25205 25221 36874 36874 0.0912323097963963 RERRQGGH 8 Unmodified _RERRQGGH_ 0 0 0 ENST00000534947.5_1_12:6833477-6833561:+|nuORF;ENST00000538753.5_1_12:6833477-6833820:+|nuORF ENST00000534947.5_1_12:6833477-6833561:+|nuORF ENST00000534947.5_1_12:6833477-6833561:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.0157775878906 3 332.512912 994.516908 -0.1053 -3.5013E-05 2.0664 0.00068709 1.9611 0.00065208 332.5137720648602 22.554 0.21156 21.1 20.978 21.19 -1.4535 7 5 2 0 0 0 1.0267 1 3598 3598 3.5965 0.60125 1 169960 37507 11011 25206 25222 36875 36875 0.019429910263852435 RERRQGGH 8 Unmodified _RERRQGGH_ 0 0 0 ENST00000534947.5_1_12:6833477-6833561:+|nuORF;ENST00000538753.5_1_12:6833477-6833820:+|nuORF ENST00000534947.5_1_12:6833477-6833561:+|nuORF ENST00000534947.5_1_12:6833477-6833561:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 332.512912 994.516908 -1.1958 -0.0003976 3.4107 0.0011341 2.2149 0.00073649 332.51400932675085 22.847 0.23915 21.058 20.885 21.124 -1.7886 -0.021232 0.0001961 NaN 3.5965 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 190930 37508 11011 25206 25222 0.019429910263852435 RERRQRRRQEK 11 Unmodified _RERRQRRRQEK_ 0 0 0 REV__ENSG00000159450|ENST00000614923|TCHH REV__ENSG00000159450|ENST00000614923|TCHH MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.275146484375 3 533.312121 1596.91454 NaN NaN NaN NaN NaN NaN NaN 160.27 1 155.02 154.52 155.52 -5.2526 0 0 0 0.22632 1 31104 31104 0.094841 0 1 + 37509 17373 25207 25223 36876 36876 0.1399544016596792 RERRSFTEA 9 Unmodified _RERRSFTEA_ 0 0 0 nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;ENSG00000117155|ENST00000342203|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENST00000459708.1_1_1:85121010-85121631:-|nuORF nc|ENSG00000117155|Q9Y2D8-2|SSX2IP nc|ENSG00000117155|Q9Y2D8-2|SSX2IP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3196411132812 2 576.299436 1150.58432 -0.26829 -0.00015462 0.50244 0.00028956 0.23415 0.00013494 576.2998844459601 17.129 0.31216 15.914 15.741 16.053 -1.2159 17 8 3 0 0 0 0.45972 1 2716 2716 8.1555 1.5252 1 1242300 37510 2977 25208 25224 36877 36877 0.015049764466766646 RERRSFTEA 9 Unmodified _RERRSFTEA_ 0 0 0 nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;ENSG00000117155|ENST00000342203|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENST00000459708.1_1_1:85121010-85121631:-|nuORF nc|ENSG00000117155|Q9Y2D8-2|SSX2IP nc|ENSG00000117155|Q9Y2D8-2|SSX2IP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.299436 1150.58432 0.2041 0.00011762 0.098725 5.6895E-05 0.30282 0.00017452 576.2995991346743 15.936 0.31464 15.936 15.779 16.094 0 0.042984 -0.00043859 NaN 8.1555 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2239700 37511 2977 25208 25224 0.015049764466766646 RERRSFTEA 9 Unmodified _RERRSFTEA_ 0 0 0 nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;ENSG00000117155|ENST00000342203|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENST00000459708.1_1_1:85121010-85121631:-|nuORF nc|ENSG00000117155|Q9Y2D8-2|SSX2IP nc|ENSG00000117155|Q9Y2D8-2|SSX2IP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.299436 1150.58432 -0.35508 -0.00020463 0.7029 0.00040508 0.34782 0.00020045 576.2998216178877 17.102 0.2787 15.83 15.696 15.974 -1.2722 -0.063299 0.00025778 NaN 8.1555 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 913910 37512 2977 25208 25224 0.015049764466766646 RERSYSLPG 9 Unmodified _RERSYSLPG_ 0 0 0 ENSG00000188523|ENST00000393216|CFAP77;nc|ENSG00000188523|Q6ZQR2|CFAP77 ENSG00000188523|ENST00000393216|CFAP77 ENSG00000188523|ENST00000393216|CFAP77 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2794189453125 2 532.777805 1063.54106 0.98164 0.000523 -0.8644 -0.00046053 0.11724 6.2464E-05 532.7773890455964 23.983 0.90497 22.429 22.047 22.952 -1.5532 78 25 4 0 0 0 0.46882 1 4138 4138 21.537 2.28 1 14331000 37513 7173 25209 25225 36878 36878 0.011827866693693068 RERSYSLPG 9 Unmodified _RERSYSLPG_ 0 0 0 ENSG00000188523|ENST00000393216|CFAP77;nc|ENSG00000188523|Q6ZQR2|CFAP77 ENSG00000188523|ENST00000393216|CFAP77 ENSG00000188523|ENST00000393216|CFAP77 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2793579101562 2 532.777805 1063.54106 0.37252 0.00019847 -0.23758 -0.00012658 0.13494 7.1893E-05 532.7777059891014 23.884 1.0017 22.35 21.883 22.884 -1.5342 83 28 4 0 0 0 0.46882 1 3870 3870 21.537 3.3906 1 19222000 37514 7173 25209 25225 36879 36879 0.011827866693693068 RERYLRNGEHR 11 Unmodified _RERYLRNGEHR_ 0 0 0 REV__nc|ENSG00000175556|Q496Y0-3|LONRF3 REV__nc|ENSG00000175556|Q496Y0-3|LONRF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 495.4507141113281 3 495.930907 1484.77089 -1.796 -0.0008907 0.74429 0.00036912 -1.0517 -0.00052159 496.2657391326364 14.417 0.31644 13.207 13.066 13.382 -1.2106 19 8 3 0 0 0 0.89122 1 1896 1896 0.50596 0 1 351040 + 37515 18480 25210 25226 36880 36880 0.04789593335021891 RERYLRNGEHR 11 Unmodified _RERYLRNGEHR_ 0 0 0 REV__nc|ENSG00000175556|Q496Y0-3|LONRF3 REV__nc|ENSG00000175556|Q496Y0-3|LONRF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 495.930907 1484.77089 0.066243 3.2852E-05 -0.58275 -0.000289 -0.5165 -0.00025615 495.93061979357486 13.58 0.23885 13.58 13.48 13.719 0 0.24488 -0.00074273 NaN 0.50596 15 6 3 NaN NaN NaN NaN 0 NaN NaN 0 550420 + 37516 18480 25210 25226 0.04789593335021891 RERYLRNGEHR 11 Unmodified _RERYLRNGEHR_ 0 0 0 REV__nc|ENSG00000175556|Q496Y0-3|LONRF3 REV__nc|ENSG00000175556|Q496Y0-3|LONRF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 495.930907 1484.77089 -0.6061 -0.00030058 -0.001711 -8.4855E-07 -0.60781 -0.00030143 495.93082088800463 14.406 0.3111 13.292 13.123 13.434 -1.1142 -0.043848 0.00012173 NaN 0.50596 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 641100 + 37517 18480 25210 25226 0.04789593335021891 RERYQVIL 8 Unmodified _RERYQVIL_ 0 0 0 ENST00000370798.5_1_1:78107309-78149041:-|nuORF ENST00000370798.5_1_1:78107309-78149041:-|nuORF ENST00000370798.5_1_1:78107309-78149041:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2140808105469 3 359.545219 1075.61383 -0.64441 -0.0002317 0.5207 0.00018722 -0.12371 -4.4479E-05 359.54535143445236 16.552 0.30904 15.337 15.149 15.459 -1.2159 25 8 4 0 0 0 0.73402 1 2608 2608 9.3831 0 1 3774400 37518 9148 25211 25227 36881 36881 0.07904540462800469 RERYQVIL 8 Unmodified _RERYQVIL_ 0 0 0 ENST00000370798.5_1_1:78107309-78149041:-|nuORF ENST00000370798.5_1_1:78107309-78149041:-|nuORF ENST00000370798.5_1_1:78107309-78149041:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 359.545219 1075.61383 -0.3442 -0.00012376 0.27917 0.00010038 -0.065029 -2.3381E-05 359.5452989639943 15.382 0.27797 15.382 15.261 15.539 0 0.036979 -0.00013208 NaN 9.3831 22 7 4 NaN NaN NaN NaN 0 NaN NaN 0 7259300 37519 9148 25211 25227 0.07904540462800469 RERYQVIL 8 Unmodified _RERYQVIL_ 0 0 0 ENST00000370798.5_1_1:78107309-78149041:-|nuORF ENST00000370798.5_1_1:78107309-78149041:-|nuORF ENST00000370798.5_1_1:78107309-78149041:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.545219 1075.61383 -0.64441 -0.0002317 0.5207 0.00018722 -0.12371 -4.4479E-05 359.54535143445236 16.552 0.30904 15.337 15.149 15.459 -1.2159 -0.008102 0.00012844 NaN 9.3831 25 8 4 NaN NaN NaN NaN 0 NaN NaN 0 3774400 37520 9148 25211 25227 0.07904540462800469 RERYQVIL 8 Unmodified _RERYQVIL_ 0 0 0 ENST00000370798.5_1_1:78107309-78149041:-|nuORF ENST00000370798.5_1_1:78107309-78149041:-|nuORF ENST00000370798.5_1_1:78107309-78149041:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.545219 1075.61383 -0.49779 -0.00017898 0.37966 0.0001365 -0.11813 -4.2473E-05 359.545329736659 16.538 0.30852 15.316 15.196 15.505 -1.2219 -0.028877 -2.3695E-05 NaN 9.3831 22 8 4 NaN NaN NaN NaN 0 NaN NaN 0 3559300 37521 9148 25211 25227 0.07904540462800469 RESGLKYVA 9 Unmodified _RESGLKYVA_ 0 0 0 ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.19439697265625 3 341.525825 1021.55564 -0.48242 -0.00016476 0.31372 0.00010714 -0.1687 -5.7616E-05 341.52592516535907 38.007 0.37882 35.669 35.464 35.843 -2.3375 24 10 3 0 0 0 0.074448 1 6725 6725 81.552 51.711 1 6550100 37522 1774 25212 25228 36882 36882 0.045728588175165896 RESGLKYVA 9 Unmodified _RESGLKYVA_ 0 0 0 ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 341.525825 1021.55564 -0.34106 -0.00011648 -0.048459 -1.655E-05 -0.38952 -0.00013303 341.52583096858814 35.815 0.37073 35.815 35.554 35.925 0 0.12523 -0.00028104 NaN 81.552 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 4780500 37523 1774 25212 25228 0.045728588175165896 RESGLKYVA 9 Unmodified _RESGLKYVA_ 0 0 0 ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 341.525825 1021.55564 -0.62188 -0.00021239 0.78868 0.00026936 0.1668 5.6965E-05 341.52599738239206 38.132 0.41138 35.663 35.471 35.882 -2.4688 -0.026744 0.00057667 NaN 81.552 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 8040200 37524 1774 25212 25228 0.045728588175165896 RESGLKYVA 9 Unmodified _RESGLKYVA_ 0 0 0 ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 341.525825 1021.55564 0.071023 2.4256E-05 -0.12294 -4.1987E-05 -0.051917 -1.7731E-05 341.52576299839717 38.054 0.4626 35.612 35.348 35.81 -2.4419 -0.077722 -0.00035736 NaN 81.552 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 9576700 37525 1774 25212 25228 0.045728588175165896 RESISRPPP 9 Unmodified _RESISRPPP_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.1960144042969 3 346.861207 1037.56179 0.18119 6.2847E-05 -0.23034 -7.9895E-05 -0.049149 -1.7048E-05 346.8611261033603 21.263 1.9792 19.789 18.852 20.832 -1.4742 80 55 2 0 0 0 0.10782 1 3506 3506 36.127 15.673 1 1268200 37526 12588 25213 25229 36883 36883 0.04451377049053917 RESISRPPP 9 Unmodified _RESISRPPP_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 346.861207 1037.56179 -0.36261 -0.00012577 0.34696 0.00012035 -0.015649 -5.4282E-06 346.86125310236076 19.401 2.1641 19.401 18.652 20.816 0 -0.20157 0.00030291 NaN 36.127 92 61 3 NaN NaN NaN NaN 0 NaN NaN 0 1112500 37527 12588 25213 25229 0.04451377049053917 RESISRPPP 9 Unmodified _RESISRPPP_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 346.861207 1037.56179 -0.19872 -6.8927E-05 0.16884 5.8563E-05 -0.02988 -1.0364E-05 346.8612265256781 21.002 1.8075 19.617 19.062 20.869 -1.3847 0.014969 0.00011756 NaN 36.127 97 51 3 NaN NaN NaN NaN 0 NaN NaN 0 1231800 37528 12588 25213 25229 0.04451377049053917 RESKVVVPP 9 Unmodified _RESKVVVPP_ 0 0 0 nc|ENSG00000112335|O60493-4|SNX3;ENSG00000112335|ENST00000230085|SNX3 nc|ENSG00000112335|O60493-4|SNX3 nc|ENSG00000112335|O60493-4|SNX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.8719177246094 3 337.537953 1009.59203 -0.36764 -0.00012409 0.44823 0.00015129 0.080588 2.7202E-05 337.53814294849894 31.202 1.0812 31.202 30.272 31.353 0 53 30 2 0 0 0 0.35556 1 5596 5596 12.241 7.3436 1 864590 37529 2688 25214 25230 36884 36884 0.0876173571423351 RESKVVVPP 9 Unmodified _RESKVVVPP_ 0 0 0 nc|ENSG00000112335|O60493-4|SNX3;ENSG00000112335|ENST00000230085|SNX3 nc|ENSG00000112335|O60493-4|SNX3 nc|ENSG00000112335|O60493-4|SNX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.83441162109375 3 337.537953 1009.59203 -0.38038 -0.00012839 0.39008 0.00013167 0.009702 3.2748E-06 337.5380377545133 32.411 1.8126 32.411 31.353 33.165 0 69 51 2 0 0 0 0.25976 1 5939 5939 19.626 9.4754 1 1204200 37530 2688 25214 25230 36885 36885 0.0876173571423351 RESKVVVPP 9 Unmodified _RESKVVVPP_ 0 0 0 nc|ENSG00000112335|O60493-4|SNX3;ENSG00000112335|ENST00000230085|SNX3 nc|ENSG00000112335|O60493-4|SNX3 nc|ENSG00000112335|O60493-4|SNX3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 337.537953 1009.59203 -0.44879 -0.00015148 0.30189 0.0001019 -0.1469 -4.9584E-05 337.5380313295614 34.793 1.1494 32.475 31.596 32.746 -2.3175 0.083381 0.00017506 NaN 19.626 50 32 2 NaN NaN NaN NaN 0 NaN NaN 0 1013000 37531 2688 25214 25230 0.0876173571423351 RESKVVVPP 9 Unmodified _RESKVVVPP_ 0 0 0 nc|ENSG00000112335|O60493-4|SNX3;ENSG00000112335|ENST00000230085|SNX3 nc|ENSG00000112335|O60493-4|SNX3 nc|ENSG00000112335|O60493-4|SNX3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 337.537953 1009.59203 0.18398 6.21E-05 -0.40229 -0.00013579 -0.21832 -7.369E-05 337.5378089695187 34.543 1.1834 32.29 31.907 33.09 -2.2527 -0.1021 -0.000538 NaN 19.626 59 33 2 NaN NaN NaN NaN 0 NaN NaN 0 970750 37532 2688 25214 25230 0.0876173571423351 RESLASPVA 9 Unmodified _RESLASPVA_ 0 0 0 ENST00000373622.9_1_20:35807565-35812612:+|nuORF ENST00000373622.9_1_20:35807565-35812612:+|nuORF ENST00000373622.9_1_20:35807565-35812612:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2558898925781 2 465.256174 928.497795 0.46264 0.00021524 -0.79333 -0.0003691 -0.33069 -0.00015386 465.2557698042003 46.285 0.83098 46.285 45.864 46.695 0 57 23 3 0 0 0 0.11828 2 8698 8650;8698 49.554 1.8056 1 13463000 37533 9201 25215 25231 36886;36887 36887 0.03068596892092046 RESLASPVA 9 Unmodified _RESLASPVA_ 0 0 0 ENST00000373622.9_1_20:35807565-35812612:+|nuORF ENST00000373622.9_1_20:35807565-35812612:+|nuORF ENST00000373622.9_1_20:35807565-35812612:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2555847167969 2 465.256174 928.497795 -0.16301 -7.5841E-05 -0.74308 -0.00034572 -0.90609 -0.00042156 465.2557890085448 49.068 0.76709 46.187 45.789 46.556 -2.8811 56 21 3 0 0 0 0.063365 2 9280 9230;9280 66.457 20.757 1 18740000 37534 9201 25215 25231 36888;36889 36889 0.03068596892092046 RESLASPVA 9 Unmodified _RESLASPVA_ 0 0 0 ENST00000373622.9_1_20:35807565-35812612:+|nuORF ENST00000373622.9_1_20:35807565-35812612:+|nuORF ENST00000373622.9_1_20:35807565-35812612:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.255615234375 2 465.256174 928.497795 -0.015016 -6.9861E-06 -0.80737 -0.00037563 -0.82238 -0.00038262 465.2557515606762 49.222 0.792 46.223 45.791 46.583 -2.999 72 22 4 0 0 0 0.094316 1 8980 8980 57.722 9.9733 1 18066000 37535 9201 25215 25231 36890 36890 0.03068596892092046 RESLASPVA 9 Unmodified _RESLASPVA_ 0 0 0 ENST00000373622.9_1_20:35807565-35812612:+|nuORF ENST00000373622.9_1_20:35807565-35812612:+|nuORF ENST00000373622.9_1_20:35807565-35812612:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25555419921875 2 465.256174 928.497795 -0.076635 -3.5655E-05 -0.70715 -0.00032901 -0.78379 -0.00036466 465.25577871493516 49.191 0.83467 46.185 45.765 46.599 -3.0068 72 23 5 0 0 0 0.039785 2 9001 8954;9001 75.761 13.188 1 14254000 37536 9201 25215 25231 36891;36892 36892 0.03068596892092046 RESLPSTVSA 10 Unmodified _RESLPSTVSA_ 0 0 0 ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2 ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.684326171875 2 523.77747 1045.54039 0.42259 0.00022134 -0.73769 -0.00038639 -0.3151 -0.00016504 523.7770516015919 49.435 0.6271 49.435 49.125 49.753 0 32 17 2 0 0 0 0.2423 1 9358 9358 61.09 31.249 1 8132400 37537 31 25216 25232 36893 36893 0.019439472296653548 RESPPQIT 8 Unmodified _RESPPQIT_ 0 0 0 REV__ENST00000392914.3_1_12:102517666-102545686:+|nuORF REV__ENST00000392914.3_1_12:102517666-102545686:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2510070800781 2 464.248349 926.482145 0.053144 2.4672E-05 -0.084047 -3.9019E-05 -0.030904 -1.4347E-05 464.24823590479514 41.352 1.1615 38.862 38.386 39.547 -2.4896 86 32 4 0 0 0 0.68827 1 7398 7398 16.149 1.3108 1 8307800 + 37538 21228 25217 25233 36894 36894 0.01596310375032317 RESPVQHLV 9 Unmodified _RESPVQHLV_ 0 0 0 nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF;nc|ENSG00000103932|Q9BWH6-3|RPAP1 nc|ENSG00000103932|Q9BWH6-2|RPAP1 nc|ENSG00000103932|Q9BWH6-2|RPAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.264404296875 2 532.795998 1063.57744 0.27241 0.00014514 -0.45235 -0.00024101 -0.17994 -9.5873E-05 532.795731926538 50.423 0.74924 50.423 49.992 50.741 0 38 21 2 0 0 0 0.6202 1 9543 9543 33.445 11.908 1 5034400 37539 2210 25218 25234 36895 36895 0.048196635660815446 RESSCNTI 8 Unmodified _RESSCNTI_ 0 0 0 REV__nc|ENSG00000113597|A5PLN9-4|TRAPPC13 REV__nc|ENSG00000113597|A5PLN9-4|TRAPPC13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.2480773925781 3 303.808003 908.40218 NaN NaN NaN NaN NaN NaN NaN 27.93 1 25.934 25.434 26.434 -1.9962 0 0 0 0.21486 1 4692 4692 3.5965 0 1 + 37540 24004 25219 25235 36896 36896 -0.05568499290438922 RESVRPRSG 9 Unmodified _RESVRPRSG_ 0 0 0 REV__ENST00000464428.2_1_1:177936859-177991802:-|nuORF REV__ENST00000464428.2_1_1:177936859-177991802:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2815551757812 2 522.288871 1042.56319 NaN NaN NaN NaN NaN NaN NaN 154.24 1 149.47 148.97 149.97 -4.7684 0 0 0 0.23508 1 30657 30657 5.7319 1.4026 1 + 37541 21935 25220 25236 36897 36897 0.043610111378029615 RETGLWGT 8 Unmodified _RETGLWGT_ 0 0 0 REV__ENST00000553128.5_1_12:110936645-110939909:-|nuORF REV__ENST00000553128.5_1_12:110936645-110939909:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2353515625 2 460.235242 918.45593 -0.13137 -6.0463E-05 0.35241 0.00016219 0.22104 0.00010173 460.2353966781765 44.378 0.79656 41.588 41.051 41.847 -2.79 35 22 2 0 0 0 8448 1 8324 8324 6.2058 0 1 1821500 + 37542 22956 25221 25237 36898 36898 -0.006559587964147795 RETIGPRSF 9 Unmodified _RETIGPRSF_ 0 0 0 REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2758178710938 2 531.788173 1061.56179 0.59913 0.00031861 -1.3977 -0.00074328 -0.79856 -0.00042467 531.7874400275319 86.546 0.9047 82.595 82.192 83.096 -3.9503 87 25 5 0 0 0 0.52396 1 16523 16523 18.146 1.0335 1 99160000 + 37543 20596 25222 25238 36899 36899 0.03347377049044553 RETIGPRSF 9 Unmodified _RETIGPRSF_ 0 0 0 REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 531.788173 1061.56179 -0.011614 -6.1761E-06 -0.78043 -0.00041503 -0.79205 -0.0004212 531.7877479429004 86.369 0.81933 82.642 82.26 83.079 -3.727 -0.033204 0.00016336 NaN 18.146 82 22 5 NaN NaN NaN NaN 0 NaN NaN 0 103130000 + 37544 20596 25222 25238 0.03347377049044553 RETIGPRSF 9 Unmodified _RETIGPRSF_ 0 0 0 REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 531.788173 1061.56179 0.59913 0.00031861 -1.3977 -0.00074328 -0.79856 -0.00042467 531.7874400275319 86.546 0.9047 82.595 82.192 83.096 -3.9503 -0.080129 -0.00049314 NaN 18.146 87 25 5 NaN NaN NaN NaN 0 NaN NaN 0 99160000 + 37545 20596 25222 25238 0.03347377049044553 RETIGPRSF 9 Unmodified _RETIGPRSF_ 0 0 0 REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF REV__ENST00000435519.6_1_7:99809411-99820265:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 531.788173 1061.56179 0.13447 7.1511E-05 -0.97006 -0.00051587 -0.83559 -0.00044436 531.7876182331122 86.336 0.98825 82.608 82.205 83.193 -3.7289 -0.067935 -3.8319E-05 NaN 18.146 92 27 5 NaN NaN NaN NaN 0 NaN NaN 0 102210000 + 37546 20596 25222 25238 0.03347377049044553 RETPQHPAQP 10 Unmodified _RETPQHPAQP_ 0 0 0 REV__SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant REV__SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7122497558594 3 387.53175 1159.57342 NaN NaN NaN NaN NaN NaN NaN 36.018 1 33.624 33.124 34.124 -2.3938 0 0 0 0.22588 1 6645 6645 10.899 0.58372 1 + 37547 19323 25223 25239 36900 36900 1.5740723711132887E-05 RETRNYYMHKQ 11 Unmodified _RETRNYYMHKQ_ 0 0 0 REV__ENST00000474271.1_1_14:104038142-104073571:+|nuORF REV__ENST00000474271.1_1_14:104038142-104073571:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 509.2387390136719 3 509.249136 1524.72558 NaN NaN NaN NaN NaN NaN NaN 63.221 1 59.805 59.305 60.305 -3.4158 0 0 0 0.22632 1 11808 11808 8.5636 7.1562 1 + 37548 22079 25224 25240 36901 36901 -0.015793932423775914 RETTENLV 8 Unmodified _RETTENLV_ 0 0 0 ENSG00000187054|ENST00000508048|TMPRSS11A;nc|ENSG00000187054|Q6ZMR5-1|TMPRSS11A ENSG00000187054|ENST00000508048|TMPRSS11A ENSG00000187054|ENST00000508048|TMPRSS11A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.244384765625 2 481.251089 960.487624 -0.10342 -4.9772E-05 2.6566 0.0012785 2.5532 0.0012287 481.2532946354363 96.335 1.0014 92.416 91.918 92.919 -3.9194 63 28 3 0 0 0 8448 1 18438 18438 6.2058 0 1 3603100 37549 7092 25225 25241 36902 36902 0.005799891668630153 RETWVRRRRWW 11 Unmodified _RETWVRRRRWW_ 0 0 0 REV__ENST00000471600.6_1_1:21924475-21926051:-|nuORF REV__ENST00000471600.6_1_1:21924475-21926051:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 563.0234375 3 562.978191 1685.91274 NaN NaN NaN NaN NaN NaN NaN 141.17 1 136.18 135.68 136.68 -4.9877 0 0 0 0.23698 1 27181 27181 0 0 1 + 37550 21057 25226 25242 36903 36903 0.09722431148020405 REVAVLAN 8 Unmodified _REVAVLAN_ 0 0 0 NEK1|p.K200Nfs*9|1|0.24|ENSG00000137601|chr4:169587565-169587565|T/-|frameshift_variant;NEK1|p.K337Nfs*13|1|0.37|ENSG00000137601|chr4:169576937-169576937|T/-|frameshift_variant;nc|ENSG00000137601|Q96PY6-5|NEK1;NEK1|p.I605Sfs*4|1|0.42|ENSG00000137601|chr4:169507729-169507729|T/-|frameshift_variant;NEK1|p.V637Cfs*34|1|0.31|ENSG00000137601|chr4:169507052-169507052|T/-|frameshift_variant;nc|ENSG00000137601|Q96PY6-4|NEK1;nc|ENSG00000137601|Q96PY6-2|NEK1;nc|ENSG00000137601|Q96PY6-6|NEK1;nc|ENSG00000137601|Q96PY6|NEK1;ENSG00000137601|ENST00000507142|NEK1 NEK1|p.K200Nfs*9|1|0.24|ENSG00000137601|chr4:169587565-169587565|T/-|frameshift_variant NEK1|p.K200Nfs*9|1|0.24|ENSG00000137601|chr4:169587565-169587565|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2271728515625 2 436.253434 870.492316 0.0088864 3.8767E-06 0.1279 5.5797E-05 0.13679 5.9674E-05 436.25341923058943 52.267 0.73702 49.179 48.742 49.479 -3.0876 54 20 4 0 0 0 8448 1 9571 9571 20.454 0 1 11875000 37551 4096 25227 25243 36904 36904 0.051889181002820806 REVAVRTV 8 Unmodified _REVAVRTV_ 0 0 0 ENST00000345016.9_1_19:2101519-2101621:-|nuORF ENST00000345016.9_1_19:2101519-2101621:-|nuORF ENST00000345016.9_1_19:2101519-2101621:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24755859375 2 465.279983 928.545414 -0.27254 -0.00012681 0.48185 0.0002242 0.20931 9.7388E-05 465.2802324732951 34.833 0.3821 32.516 32.293 32.675 -2.3175 19 10 2 0 0 0 0.88497 1 6400 6400 10.074 0 1 1543200 37552 8902 25228 25244 36905 36905 0.07828295882950442 REVEAQRLRRE 11 Unmodified _REVEAQRLRRE_ 0 0 0 REV__nc|ENSG00000178209|Q15149-7|PLEC REV__nc|ENSG00000178209|Q15149-7|PLEC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2479553222656 3 481.270929 1440.79096 NaN NaN NaN NaN NaN NaN NaN 120.89 1 116.42 115.92 116.92 -4.467 0 0 0 0.22632 1 23279 23279 5.4027 5.2307 1 + 37553 18594 25229 25245 36906 36906 0.08819344274979812 REVEEPER 8 Unmodified _REVEEPER_ 0 0 0 REV__ENSG00000118156|ENST00000391901|ZNF541 REV__ENSG00000118156|ENST00000391901|ZNF541 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2601318359375 2 522.259445 1042.50434 -0.54394 -0.00028408 0.34197 0.0001786 -0.20197 -0.00010548 522.259752518222 35.445 0.67432 33.051 32.81 33.484 -2.3938 28 18 2 0 0 0 0.40222 1 6515 6515 32.305 3.8186 1 848140 + 37554 15540 25230 25246 36907 36907 -0.015215099471788562 REVGPAKY 8 Unmodified _REVGPAKY_ 0 0 0 REV__nc|ENSG00000188089|Q3MJ16|PLA2G4E REV__nc|ENSG00000188089|Q3MJ16|PLA2G4E MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2467041015625 2 460.253434 918.492316 0.41392 0.00019051 -2.188 -0.001007 -1.774 -0.00081651 460.25393932368803 50.13 0.91651 50.13 49.825 50.741 0 27 26 2 0 0 0 0.71273 1 9510 9510 12.532 0 1 585230 + 37555 19132 25231 25247 36908 36908 0.02980918100274721 REVHINLY 8 Unmodified _REVHINLY_ 0 0 0 REV__ENST00000503741.5_1_5:145883557-145887476:+|nuORF REV__ENST00000503741.5_1_5:145883557-145887476:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2755737304688 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 128.24 1 123.61 123.11 124.11 -4.6292 0 0 0 0.21486 1 25287 25287 12.532 0.89125 1 + 37556 22455 25232 25248 36909 36909 0.03640278537386621 REVHINLY 8 Unmodified _REVHINLY_ 0 0 0 REV__ENST00000503741.5_1_5:145883557-145887476:+|nuORF REV__ENST00000503741.5_1_5:145883557-145887476:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27294921875 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 148.33 1 143.27 142.77 143.77 -5.0595 0 0 0 0.23487 1 28727 28727 0.62683 0.21856 1 + 37557 22455 25232 25248 36910 36910 0.03640278537386621 REVIENLVP 9 Unmodified _REVIENLVP_ 0 0 0 tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1 tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1 tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.0728759765625 3 356.873113 1067.59751 -0.90456 -0.00032281 1.1125 0.00039703 0.20797 7.422E-05 356.8734681839499 24.791 0.58185 22.938 22.71 23.292 -1.8534 41 16 4 0 0 0 0.8799 1 4113 4113 4.897 0 1 3377600 37558 26389 25233 25249 36911 36911 0.06641414506066212 REVLKRRN 8 Unmodified _REVLKRRN_ 0 0 0 MYBL1|p.E593Rfs*14|1|0.3|ENSG00000185697|chr8:66566944-66566945|-/T|frameshift_variant MYBL1|p.E593Rfs*14|1|0.3|ENSG00000185697|chr8:66566944-66566945|-/T|frameshift_variant MYBL1|p.E593Rfs*14|1|0.3|ENSG00000185697|chr8:66566944-66566945|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5575256347656 3 357.55623 1069.64686 NaN NaN NaN NaN NaN NaN NaN 16.75 1 16.75 16.25 17.25 0 0 0 0 0.21486 1 2617 2617 2.7352 0.45242 1 37559 12179 25234 25250 36912 36912 0.11482167305507573 REVPGSEAA 9 Unmodified _REVPGSEAA_ 0 0 0 TRAPPC12|p.P274Rfs*25|1|0.48|ENSG00000171853|chr2:3388440-3388440|C/-|frameshift_variant;ENST00000482645.1_1_2:3383573-3392513:+|nuORF;TRAPPC12|p.K601Sfs*9|1|0.1|ENSG00000171853|chr2:3477717-3477717|A/-|frameshift_variant;ENSG00000171853|ENST00000324266|TRAPPC12 TRAPPC12|p.P274Rfs*25|1|0.48|ENSG00000171853|chr2:3388440-3388440|C/-|frameshift_variant TRAPPC12|p.P274Rfs*25|1|0.48|ENSG00000171853|chr2:3388440-3388440|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2300720214844 2 458.230156 914.445759 0.19657 9.0077E-05 0.24642 0.00011292 0.44299 0.00020299 458.2302184880799 17.695 0.43498 17.695 17.48 17.915 0 18 11 2 0 0 0 0.5428 1 2832 2832 4.897 1.6157 1 439050 37560 6181 25235 25251 36913 36913 -0.0148856652166387 REVPGSEAA 9 Unmodified _REVPGSEAA_ 0 0 0 TRAPPC12|p.P274Rfs*25|1|0.48|ENSG00000171853|chr2:3388440-3388440|C/-|frameshift_variant;ENST00000482645.1_1_2:3383573-3392513:+|nuORF;TRAPPC12|p.K601Sfs*9|1|0.1|ENSG00000171853|chr2:3477717-3477717|A/-|frameshift_variant;ENSG00000171853|ENST00000324266|TRAPPC12 TRAPPC12|p.P274Rfs*25|1|0.48|ENSG00000171853|chr2:3388440-3388440|C/-|frameshift_variant TRAPPC12|p.P274Rfs*25|1|0.48|ENSG00000171853|chr2:3388440-3388440|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2304992675781 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 18.798 1 17.473 16.973 17.973 -1.3251 0 0 0 0.19657 1 2837 2837 4.897 1.0207 1 37561 6181 25235 25251 36914 36914 -0.0148856652166387 REWERRQRERE 11 Unmodified _REWERRQRERE_ 0 0 0 ZC3H18|p.R427W|1|0.37|ENSG00000158545|chr16:88611340-88611340|C/T|missense_variant ZC3H18|p.R427W|1|0.37|ENSG00000158545|chr16:88611340-88611340|C/T|missense_variant ZC3H18|p.R427W|1|0.37|ENSG00000158545|chr16:88611340-88611340|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3785400390625 2 815.419468 1628.82438 NaN NaN NaN NaN NaN NaN NaN 171.53 1 166.62 166.12 167.12 -4.9149 0 0 0 0.23476 1 33978 33978 4.5289 1.7937 1 37562 26594 25236 25252 36915 36915 0.035123460468412304 REWRRTLPVP 10 Unmodified _REWRRTLPVP_ 0 0 0 ENST00000265678.8_1_6:166823066-166823216:-|nuORF ENST00000265678.8_1_6:166823066-166823216:-|nuORF ENST00000265678.8_1_6:166823066-166823216:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.7395935058594 3 437.254439 1308.74149 NaN NaN NaN NaN NaN NaN NaN 94.036 1 90.045 89.545 90.545 -3.9907 0 0 0 2.8426 1 18421 18421 1.9064 1.8626 1 37563 8361 25237 25253 36916 36916 0.09946681056840134 REWRYNQRHVW 11 Unmodified _REWRYNQRHVW_ 0 0 0 ENST00000432815.2_1_1:173332252-173332432:-|nuORF ENST00000432815.2_1_1:173332252-173332432:-|nuORF ENST00000432815.2_1_1:173332252-173332432:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3778076171875 2 815.410914 1628.80728 NaN NaN NaN NaN NaN NaN NaN 89.999 1 89.999 89.499 90.499 0 0 0 0 0.22632 1 17580 17580 0.026206 0 1 37564 9802 25238 25254 36917 36917 0.018024702317234187 REYARYVLRTI 11 Unmodified _REYARYVLRTI_ 0 0 0 MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant;MED12L|p.N1494Rfs*10|1|0.1|ENSG00000144893|chr3:151380219-151380220|-/GAAATAATGCATT|frameshift_variant;MED12L|p.T1760Pfs*44|1|0.42|ENSG00000144893|chr3:151388100-151388100|A/-|frameshift_variant;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant MED12L|p.L1417Sfs*14|1|0.06|ENSG00000144893|chr3:151378044-151378044|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24359130859375 3 480.60877 1438.80448 0.019769 9.501E-06 -0.03389 -1.6288E-05 -0.014122 -6.7871E-06 480.608753113027 102.28 0.69425 98.093 97.751 98.445 -4.1861 44 19 3 0 0 0 0.66087 2 20064 20064;20112 1.4551 0 1 3909500 37565 4583 25239 25255 36918;36919 36918 0.10263202054215981 REYEIEFIY 9 Unmodified _REYEIEFIY_ 0 0 0 nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-2|OGA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7652587890625 2 631.308603 1260.60265 0.68633 0.00043328 -0.23905 -0.00015091 0.44728 0.00028237 631.3083356932935 160.77 0.67377 155.51 155.13 155.81 -5.2527 45 18 3 0 0 0 0.38759 1 31223 31223 36.81 33.499 1 6951200 37566 7451 25240 25256 36920 36920 -0.017223264219865086 REYKELLQ 8 Unmodified _REYKELLQ_ 0 0 0 ENSG00000182173|ENST00000333213|TSEN54 ENSG00000182173|ENST00000333213|TSEN54 ENSG00000182173|ENST00000333213|TSEN54 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 81.182 1 77.342 76.842 77.842 -3.8392 0 0 0 0.21486 1 15409 15409 8.7454 0 1 37567 6770 25241 25257 36921 36921 0.0461712798901317 REYPDATIN 9 Unmodified _REYPDATIN_ 0 0 0 REV__ENSG00000180801|ENST00000315366|ARSJ REV__ENSG00000180801|ENST00000315366|ARSJ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201171875 3 360.176972 1077.50909 NaN NaN NaN NaN NaN NaN NaN 40.932 1 38.442 37.942 38.942 -2.4896 0 0 0 0.23375 1 7338 7338 13.615 2.7909 1 + 37568 18698 25242 25258 36922 36922 -0.026566258044113056 REYWIHKEL 9 Unmodified _REYWIHKEL_ 0 0 0 ENST00000414066.1_1_10:38107898-38108846:-|nuORF ENST00000414066.1_1_10:38107898-38108846:-|nuORF ENST00000414066.1_1_10:38107898-38108846:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2384033203125 3 425.227779 1272.66151 NaN NaN NaN NaN NaN NaN NaN 23.846 1 22.293 21.793 22.793 -1.5532 0 0 0 0.23508 1 4132 4132 7.1017 0.86737 1 37569 9598 25243 25259 36923 36923 0.03608194662979258 RFAASMAEQLW 11 Unmodified _RFAASMAEQLW_ 0 0 0 REV__nc|ENSG00000133265|Q9NZL4-2|HSPBP1 REV__nc|ENSG00000133265|Q9NZL4-2|HSPBP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.216796875 3 437.216774 1308.62849 NaN NaN NaN NaN NaN NaN NaN 75.345 1 71.929 71.429 72.429 -3.4151 0 0 0 0.22423 1 14696 14696 12.856 0.6812 1 + 37570 16161 25244 25260 36924 36924 -0.013477554513656287 RFADGILST 9 Unmodified _RFADGILST_ 0 0 0 tr|U7SIU5|U7SIU5_FUSNUArginine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=argSPE=3SV=1 tr|U7SIU5|U7SIU5_FUSNUArginine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=argSPE=3SV=1 tr|U7SIU5|U7SIU5_FUSNUArginine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=argSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2647399902344 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.71 1 175.71 175.21 176.21 0 0 0 0 0.19646 1 36401 36401 0.40827 0.2854 1 37571 25925 25245 25261 36925 36925 0.023328834091330464 RFCNYCWCWD 10 Unmodified _RFCNYCWCWD_ 0 0 0 ENSG00000165091|ENST00000297784|TMC1 ENSG00000165091|ENST00000297784|TMC1 ENSG00000165091|ENST00000297784|TMC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 698.255859375 2 698.25701 1394.49947 NaN NaN NaN NaN NaN NaN NaN 7.7973 1 6.7527 6.2527 7.2527 -1.0446 0 0 0 2.8426 1 708 708 0.0013812 0.0008168 1 37572 5594 25246 25262 36926 36926 -0.18200176677487434 RFDALLNM 8 Unmodified _RFDALLNM_ 0 0 0 REV__ENSG00000157077|ENST00000287727|ZFYVE9 REV__ENSG00000157077|ENST00000287727|ZFYVE9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2543640136719 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 55.874 1 52.698 52.198 53.198 -3.1761 0 0 0 0.21486 1 10383 10383 11.64 0.81637 1 + 37573 17280 25247 25263 36927 36927 0.005578448826440763 RFDGPPGQ 8 Unmodified _RFDGPPGQ_ 0 0 0 ENSG00000165494|ENST00000690938|PCF11;nc|ENSG00000165494|O94913|PCF11 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21575927734375 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 123.4 1 123.4 122.9 123.9 0 0 0 0 0.21486 1 24323 24323 8.5933 0 1 37574 5633 25248 25264 36928 36928 -0.027245144849416647 RFDGPPGQ 8 Unmodified _RFDGPPGQ_ 0 0 0 ENSG00000165494|ENST00000690938|PCF11;nc|ENSG00000165494|O94913|PCF11 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156982421875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 128.19 1 123.38 122.88 123.88 -4.817 0 0 0 0.21486 1 24612 24612 8.5933 0 1 37575 5633 25248 25264 36929 36929 -0.027245144849416647 RFDGPPGQ 8 Unmodified _RFDGPPGQ_ 0 0 0 ENSG00000165494|ENST00000690938|PCF11;nc|ENSG00000165494|O94913|PCF11 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156982421875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 143.81 1 138.74 138.24 139.24 -5.0671 0 0 0 0.21486 1 27727 27727 11.64 0 1 37576 5633 25248 25264 36930 36930 -0.027245144849416647 RFDGPPGQ 8 Unmodified _RFDGPPGQ_ 0 0 0 ENSG00000165494|ENST00000690938|PCF11;nc|ENSG00000165494|O94913|PCF11 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2154541015625 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 128.09 1 123.35 122.85 123.85 -4.7408 0 0 0 0.21452 1 24645 24645 13.508 0 1 37577 5633 25248 25264 36931 36931 -0.027245144849416647 RFDNMWTNLI 10 Unmodified _RFDNMWTNLI_ 0 0 0 REV__ENSG00000173769|ENST00000309765|TOPAZ1 REV__ENSG00000173769|ENST00000309765|TOPAZ1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.216552734375 3 437.216774 1308.62849 NaN NaN NaN NaN NaN NaN NaN 125.12 1 125.12 124.62 125.62 0 0 0 0 0.22588 1 24676 24676 5.7834 0 1 + 37578 18373 25249 25265 36932 36932 -0.013477554513428913 RFERELYLFKR 11 Unmodified _RFERELYLFKR_ 0 0 0 REV__ENSG00000197343|ENST00000252713|ZNF655 REV__ENSG00000197343|ENST00000252713|ZNF655 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 778.7964477539062 2 778.938442 1555.86233 NaN NaN NaN NaN NaN NaN NaN 168.52 1 163.59 163.09 164.09 -4.9295 0 0 0 0.22632 1 33227 33227 0.50596 0.27741 1 + 37579 19326 25250 25266 36933 36933 0.10663463979608423 RFERKRRIKKF 11 Unmodified _RFERKRRIKKF_ 0 0 0 REV__ENSG00000130560|ENST00000371756|UBAC1 REV__ENSG00000130560|ENST00000371756|UBAC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2778930664062 3 521.995071 1562.96338 NaN NaN NaN NaN NaN NaN NaN 166.8 1 162.01 161.51 162.51 -4.7898 0 0 0 0.23698 1 33556 33556 0.08335 0 1 + 37580 16015 25251 25267 36934 36934 0.204419604729992 RFFLIGAR 8 Unmodified _RFFLIGAR_ 0 0 0 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2578430175781 2 490.295436 978.57632 NaN NaN NaN NaN NaN NaN NaN 31.682 1 29.534 29.034 30.034 -2.1483 0 0 0 0.2396 1 5466 5466 0.12286 0 1 + 37581 18527 25252 25268 36935 36935 0.08617493987856051 RFFNLFKQWKR 11 Unmodified _RFFNLFKQWKR_ 0 0 0 REV__tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 REV__tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.391357421875 2 785.443695 1568.87284 NaN NaN NaN NaN NaN NaN NaN 142.99 1 142.99 142.49 143.49 0 0 0 0 0.22632 1 28525 28525 3.0723 1.6171 1 + 37582 24846 25253 25269 36936 36936 0.11115491424720858 RFFNLFKQWKR 11 Unmodified _RFFNLFKQWKR_ 0 0 0 REV__tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 REV__tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.396240234375 2 785.443695 1568.87284 NaN NaN NaN NaN NaN NaN NaN 140.47 1 135.82 135.32 136.32 -4.6493 0 0 0 0.22632 1 27734 27734 3.0723 1.6171 1 + 37583 24846 25253 25269 36937 36937 0.11115491424720858 RFFNLFKQWKR 11 Unmodified _RFFNLFKQWKR_ 0 0 0 REV__tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 REV__tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3812866210938 2 785.443695 1568.87284 NaN NaN NaN NaN NaN NaN NaN 141.24 1 136.26 135.76 136.76 -4.9877 0 0 0 0.22632 1 27196 27196 1.4551 0.94916 1 + 37584 24846 25253 25269 36938 36938 0.11115491424720858 RFFNLFKQWKR 11 Unmodified _RFFNLFKQWKR_ 0 0 0 REV__tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 REV__tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3922119140625 2 785.443695 1568.87284 NaN NaN NaN NaN NaN NaN NaN 142.02 1 137.15 136.65 137.65 -4.8678 0 0 0 0.22632 1 27404 27404 1.4551 0.94916 1 + 37585 24846 25253 25269 36939 36939 0.11115491424720858 RFFRKIYQFLF 11 Unmodified _RFFRKIYQFLF_ 0 0 0 ENSG00000079101|ENST00000692774|CLUL1;CLUL1|p.F228Cfs*7|1|0.13|ENSG00000079101|chr18:627355-627356|-/G|frameshift_variant ENSG00000079101|ENST00000692774|CLUL1 ENSG00000079101|ENST00000692774|CLUL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2679443359375 3 522.297756 1563.87144 NaN NaN NaN NaN NaN NaN NaN 20.445 1 19.06 18.56 19.56 -1.3847 0 0 0 0.22632 1 3171 3171 0.094841 0 1 37586 1588 25254 25270 36940 36940 0.11205857335994551 RFGEGLSTL 9 Unmodified _RFGEGLSTL_ 0 0 0 ENST00000392069.6_1_2:223163333-223163570:-|nuORF ENST00000392069.6_1_2:223163333-223163570:-|nuORF ENST00000392069.6_1_2:223163333-223163570:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2649230957031 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 108.41 1 104.28 103.78 104.78 -4.135 0 0 0 0.19669 1 20860 20860 0.40827 0 1 37587 9369 25255 25271 36941 36941 0.023328834091330464 RFGQLAHGTG 10 Unmodified _RFGQLAHGTG_ 0 0 0 REV__ENST00000471408.5_1_12:6649651-6659338:-|nuORF REV__ENST00000471408.5_1_12:6649651-6659338:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2727661132812 2 522.27269 1042.53083 NaN NaN NaN NaN NaN NaN NaN 80.227 1 76.408 75.908 76.908 -3.8194 0 0 0 2.8426 1 15224 15224 10.151 0.076642 1 + 37588 22039 25256 25272 36942 36942 0.011262237347864357 RFHKIWNRALL 11 Unmodified _RFHKIWNRALL_ 0 0 0 MYO1G|p.R885W|1|0.29|ENSG00000136286|chr7:44964141-44964141|G/A|missense_variant MYO1G|p.R885W|1|0.29|ENSG00000136286|chr7:44964141-44964141|G/A|missense_variant MYO1G|p.R885W|1|0.29|ENSG00000136286|chr7:44964141-44964141|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 485.28973388671875 3 485.289484 1452.84662 NaN NaN NaN NaN NaN NaN NaN 117.63 1 113.22 112.72 113.72 -4.4088 0 0 0 0.22632 1 22639 22639 1.4551 0.94916 1 37589 12190 25257 25273 36943 36943 0.13831222253293163 RFIYPVLPF 9 Unmodified _RFIYPVLPF_ 0 0 0 ENSG00000069943|ENST00000164305|PIGB ENSG00000069943|ENST00000164305|PIGB ENSG00000069943|ENST00000164305|PIGB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3309936523438 2 576.334227 1150.6539 NaN NaN NaN NaN NaN NaN NaN 174.3 1 169.41 168.91 169.91 -4.8916 0 0 0 0.19652 1 34694 34694 0.40827 0 1 37590 1420 25258 25274 36944 36944 0.08460087133357774 RFKAFVAIGD 10 Unmodified _RFKAFVAIGD_ 0 0 0 ENST00000443417.1_1_9:102879039-102879699:-|nuORF;ENST00000479476.1_1_18:68097766-68098228:+|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533161.5_1_16:2012676-2014626:-|nuORF;RPL18-RPS2|1|fusion;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2 ENST00000443417.1_1_9:102879039-102879699:-|nuORF ENST00000443417.1_1_9:102879039-102879699:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2127990722656 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 92.554 1 88.746 88.246 89.246 -3.8083 0 0 0 2.8426 1 17736 17736 0.043787 0.035511 1 37591 9913 25259 25275 36945 36945 0.06217424605574706 RFKKKKKA 8 Unmodified _RFKKKKKA_ 0 0 0 ENST00000370544.9_1_1:87794674-87797922:+|nuORF ENST00000370544.9_1_1:87794674-87797922:+|nuORF ENST00000370544.9_1_1:87794674-87797922:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 517.3512573242188 2 517.353286 1032.69202 NaN NaN NaN NaN NaN NaN NaN 170.36 1 170.36 169.86 170.86 0 0 0 0 0.21486 1 35023 35023 0.69038 0 1 37592 9141 25260 25276 36946 36946 0.17698017838711166 RFKKKKKKK 9 Unmodified _RFKKKKKKK_ 0 0 0 ENST00000341776.6_1_6:15521185-15521434:+|nuORF ENST00000341776.6_1_6:15521185-15521434:+|nuORF ENST00000341776.6_1_6:15521185-15521434:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 406.9548034667969 3 406.955553 1217.84483 NaN NaN NaN NaN NaN NaN NaN 10.438 1 9.5336 9.0336 10.034 -0.90401 0 0 0 0.23508 1 1305 1305 0 0 1 37593 8859 25261 25277 36947 36947 0.24462213235301533 RFKQCQYL 8 Unmodified _RFKQCQYL_ 0 0 0 ENST00000558942.5_1_15:89193512-89193848:+|nuORF ENST00000558942.5_1_15:89193512-89193848:+|nuORF ENST00000558942.5_1_15:89193512-89193848:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7801513671875 2 543.281669 1084.54878 0.14457 7.854E-05 -1.495 -0.00081221 -1.3504 -0.00073367 543.7822624017472 97.967 1.0674 94.048 93.398 94.466 -3.9194 54 30 2 0 0 0 0.72861 1 18701 18701 10.183 0 1 2086000 37594 11272 25262 25278 36948 36948 0.009892226652937097 RFKRNMEVKFL 11 Unmodified _RFKRNMEVKFL_ 0 0 0 REV__CAPN6|p.D564*|1|0.31|ENSG00000077274|chrX:111247421-111247422|-/A|frameshift_variant REV__CAPN6|p.D564*|1|0.31|ENSG00000077274|chrX:111247421-111247422|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2574462890625 3 489.946618 1466.81802 NaN NaN NaN NaN NaN NaN NaN 155.57 1 150.79 150.29 151.29 -4.7791 0 0 0 0.22632 1 30925 30925 1.4551 1.4546 1 + 37595 13256 25263 25279 36949 36949 0.1032873656179163 RFKWTHGL 8 Unmodified _RFKWTHGL_ 0 0 0 ENST00000290573.6_1_2:75119227-75119419:+|nuORF ENST00000290573.6_1_2:75119227-75119419:+|nuORF ENST00000290573.6_1_2:75119227-75119419:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2689819335938 2 522.790518 1043.56648 -0.50005 -0.00026142 -2.1412 -0.0011194 -2.6413 -0.0013808 522.7897192212159 104.63 0.61772 100.28 99.973 100.59 -4.346 23 17 2 0 0 0 0.9455 1 20087 20087 23.148 7.3012 1 846030 37596 8475 25264 25280 36950 36950 0.046443059824468946 RFLHAPGL 8 Unmodified _RFLHAPGL_ 0 0 0 REV__ENST00000422133.1_1_2:10564681-10566944:+|nuORF REV__ENST00000422133.1_1_2:10564681-10566944:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.1905212402344 3 304.1801 909.518471 NaN NaN NaN NaN NaN NaN NaN 65.829 1 65.829 65.329 66.329 0 0 0 0 0.21486 1 12701 12701 1.6526 0 1 + 37597 21518 25265 25281 36951 36951 0.06009232062422143 RFLKVPMM 8 Unmodified _RFLKVPMM_ 0 0 0 ENST00000389682.7_1_2:122524444-122524561:+|nuORF ENST00000389682.7_1_2:122524444-122524561:+|nuORF ENST00000389682.7_1_2:122524444-122524561:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.1865539550781 3 341.194364 1020.56126 NaN NaN NaN NaN NaN NaN NaN 94.483 1 94.483 93.983 94.983 0 0 0 0 0.21486 1 18504 18504 0.45834 0 1 37598 9357 25266 25282 36952 36952 0.051805428039870094 RFLLDWAPFRY 11 Unmodified _RFLLDWAPFRY_ 0 0 0 GLB1L|p.G43W|1|0.34|ENSG00000163521|chr2:219243260-219243260|C/A|missense_variant GLB1L|p.G43W|1|0.34|ENSG00000163521|chr2:219243260-219243260|C/A|missense_variant GLB1L|p.G43W|1|0.34|ENSG00000163521|chr2:219243260-219243260|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3981323242188 2 742.395879 1482.7772 NaN NaN NaN NaN NaN NaN NaN 71.568 1 71.568 71.068 72.068 0 0 0 0 0.2367 1 13866 13866 2.9952 1.5133 1 37599 11852 25267 25283 36953 36953 0.05512718513841719 RFLMFAFY 8 Unmodified _RFLMFAFY_ 0 0 0 REV__GDAP1|p.V332M|1|0.16|ENSG00000104381|chr8:74364284-74364284|G/A|missense_variant REV__GDAP1|p.V332M|1|0.16|ENSG00000104381|chr8:74364284-74364284|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7783813476562 2 547.778231 1093.54191 NaN NaN NaN NaN NaN NaN NaN 93 1 89.009 88.509 89.509 -3.9907 0 0 0 0.21486 1 18218 18218 10.183 0.10947 1 + 37600 14920 25268 25284 36954 36954 -0.0011209021527065488 RFLNKLVKEN 10 Unmodified _RFLNKLVKEN_ 0 0 0 tr|U7SWG2|U7SWG2_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01026PE=4SV=1 tr|U7SWG2|U7SWG2_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01026PE=4SV=1 tr|U7SWG2|U7SWG2_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01026PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.764892578125 2 630.874779 1259.73501 NaN NaN NaN NaN NaN NaN NaN 48.553 1 45.603 45.103 46.103 -2.9499 0 0 0 2.8426 1 8889 8889 0.26539 0.2216 1 37601 26247 25269 25285 36955 36955 0.11552743105494301 RFMTSSWGEGS 11 Unmodified _RFMTSSWGEGS_ 0 0 0 ENST00000445535.1_1_1:161576981-161578004:+|nuORF ENST00000445535.1_1_1:161576981-161578004:+|nuORF ENST00000445535.1_1_1:161576981-161578004:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7719116210938 2 622.771862 1243.52917 NaN NaN NaN NaN NaN NaN NaN 38.619 1 36.069 35.569 36.569 -2.5491 0 0 0 0.22632 1 7164 7164 0.026206 0.022825 1 37602 9932 25270 25286 36956 36956 -0.08285198136127292 RFNTQPLDP 9 Unmodified _RFNTQPLDP_ 0 0 0 REV__ENST00000498109.1_1_22:22020388-22024901:+|nuORF REV__ENST00000498109.1_1_22:22020388-22024901:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.1552429199219 3 363.189212 1086.54581 -0.23674 -8.5982E-05 0.40757 0.00014802 0.17083 6.2043E-05 363.1893400323566 61.103 1.0359 58.17 57.717 58.753 -2.9333 82 29 4 0 0 0 0.78323 1 11885 11885 2.4985 0.41248 1 38065000 + 37603 14655 25271 25287 36957 36957 0.005996708121301708 RFNTQPLDP 9 Unmodified _RFNTQPLDP_ 0 0 0 REV__ENST00000498109.1_1_22:22020388-22024901:+|nuORF REV__ENST00000498109.1_1_22:22020388-22024901:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 363.189212 1086.54581 -0.51486 -0.00018699 0.72698 0.00026403 0.21211 7.7038E-05 363.1894631151464 58.307 0.97217 58.307 57.928 58.9 0 0.15597 0.00028281 NaN 2.4985 74 27 4 NaN NaN NaN NaN 0 NaN NaN 0 19450000 + 37604 14655 25271 25287 0.005996708121301708 RFNTQPLDP 9 Unmodified _RFNTQPLDP_ 0 0 0 REV__ENST00000498109.1_1_22:22020388-22024901:+|nuORF REV__ENST00000498109.1_1_22:22020388-22024901:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 363.189212 1086.54581 -0.5026 -0.00018254 0.7054 0.00025619 0.2028 7.3655E-05 363.18943661247937 61.301 1.072 58.061 57.684 58.756 -3.2395 -0.089529 0.00025931 NaN 2.4985 88 30 4 NaN NaN NaN NaN 0 NaN NaN 0 30108000 + 37605 14655 25271 25287 0.005996708121301708 RFPFWDRA 8 Unmodified _RFPFWDRA_ 0 0 0 REV__tr|U7SRC6|U7SRC6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01709PE=3SV=1 REV__tr|U7SRC6|U7SRC6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01709PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7814331054688 2 547.780151 1093.54575 NaN NaN NaN NaN NaN NaN NaN 90.378 1 86.6 86.1 87.1 -3.7779 0 0 0 0.22699 1 17296 17296 0.68139 0.27313 1 + 37606 25028 25272 25288 36958 36958 0.002717156027983947 RFQIWRPITAT 11 Unmodified _RFQIWRPITAT_ 0 0 0 nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1 nc|ENSG00000136986|Q9BUN8-2|DERL1 nc|ENSG00000136986|Q9BUN8-2|DERL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 694.8953857421875 2 694.893503 1387.77245 NaN NaN NaN NaN NaN NaN NaN 38.014 1 35.677 35.177 36.177 -2.3375 0 0 0 0.23698 1 6747 6747 1.3295 0 1 37607 4059 25273 25289 36959 36959 0.09407834371063473 RFQQRLKRL 9 Unmodified _RFQQRLKRL_ 0 0 0 REV__ENSG00000173093|ENST00000308208|CCDC63 REV__ENSG00000173093|ENST00000308208|CCDC63 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76806640625 2 622.888555 1243.76256 NaN NaN NaN NaN NaN NaN NaN 161.64 1 156.46 155.96 156.96 -5.1878 0 0 0 0.19626 1 31372 31372 0.40827 0.335 1 + 37608 18326 25274 25290 36960 36960 0.15042691156372712 RFRDAFWPNGI 11 Unmodified _RFRDAFWPNGI_ 0 0 0 SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant;SNX13|p.F911Wfs*5|1|0.02|ENSG00000071189|chr7:17794184-17794187|AAGA/-|frameshift_variant;SNX13|p.E913Qfs*13|1|0.04|ENSG00000071189|chr7:17794182-17794183|-/TTTG|frameshift_variant;ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13 SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23931884765625 3 460.238678 1377.6942 NaN NaN NaN NaN NaN NaN NaN 72.425 1 69.115 68.615 69.615 -3.3107 0 0 0 0.22632 1 14116 14116 0.172 0.14059 1 37609 1447 25275 25291 36961 36961 0.02046401785855778 RFRDAFWPNGI 11 Unmodified _RFRDAFWPNGI_ 0 0 0 SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant;SNX13|p.F911Wfs*5|1|0.02|ENSG00000071189|chr7:17794184-17794187|AAGA/-|frameshift_variant;SNX13|p.E913Qfs*13|1|0.04|ENSG00000071189|chr7:17794182-17794183|-/TTTG|frameshift_variant;ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13 SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23944091796875 3 460.238678 1377.6942 NaN NaN NaN NaN NaN NaN NaN 75.019 1 71.425 70.925 71.925 -3.594 0 0 0 0.22632 1 14256 14256 0.172 0 1 37610 1447 25275 25291 36962 36962 0.02046401785855778 RFREELLSLES 11 Unmodified _RFREELLSLES_ 0 0 0 REV__nc|ENSG00000285437|Q9H1A7|POLR2J3 REV__nc|ENSG00000285437|Q9H1A7|POLR2J3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.239501953125 3 460.249019 1377.72523 NaN NaN NaN NaN NaN NaN NaN 75.533 1 71.81 71.31 72.31 -3.7227 0 0 0 0.22632 1 14290 14290 0.65807 0.63187 1 + 37611 13852 25276 25292 36963 36963 0.051475103094617225 RFRERQSSIIS 11 Unmodified _RFRERQSSIIS_ 0 0 0 REV__ENST00000487284.2_1_7:101917466-101926379:+|nuORF REV__ENST00000487284.2_1_7:101917466-101926379:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23980712890625 3 460.256508 1377.7477 NaN NaN NaN NaN NaN NaN NaN 71.54 1 71.54 71.04 72.04 0 0 0 0 0.22632 1 13861 13861 0.172 0.17144 1 + 37612 22255 25277 25293 36964 36964 0.07393154497731302 RFRQIKFWRKK 11 Unmodified _RFRQIKFWRKK_ 0 0 0 REV__tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1 REV__tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.1902770996094 5 319.39879 1591.95757 0.18691 5.9697E-05 1.3378 0.0004273 1.5247 0.00048699 319.3991967800794 127.7 0.5265 122.91 122.66 123.19 -4.7958 21 14 2 0 0 0 0.96228 1 24541 24541 0 0 1 940820 + 37613 24974 25278 25294 36965 36965 0.18526861961322538 RFRQIKFWRKK 11 Unmodified _RFRQIKFWRKK_ 0 0 0 REV__tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1 REV__tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 5 319.39879 1591.95757 -0.21332 -6.8134E-05 1.9011 0.00060719 1.6877 0.00053906 319.3993683599849 127.61 1.0332 122.99 122.85 123.88 -4.6172 0.042127 0.00036538 NaN 0 48 28 2 NaN NaN NaN NaN 0 NaN NaN 0 1266400 + 37614 24974 25278 25294 0.18526861961322538 RFRTLMMRRRF 11 Unmodified _RFRTLMMRRRF_ 0 0 0 ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant;ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.41015625 2 785.440106 1568.86566 NaN NaN NaN NaN NaN NaN NaN 135.81 1 135.81 135.31 136.31 0 0 0 0 0.23429 1 26904 26904 4.897 1.9018 1 37615 239 25279 25295 36966 36966 0.10398112280972782 RFRTLMMRRRF 11 Unmodified _RFRTLMMRRRF_ 0 0 0 ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant;ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3932495117188 2 785.440106 1568.86566 NaN NaN NaN NaN NaN NaN NaN 147.1 1 147.1 146.6 147.6 0 0 0 0 0.22632 1 29425 29425 0.50596 0.47975 1 37616 239 25279 25295 36967 36967 0.10398112280972782 RFRYRIRKRTL 11 Unmodified _RFRYRIRKRTL_ 0 0 0 REV__JAK2|p.P501Qfs*10|1|0.06|ENSG00000096968|chr9:5069193-5069193|C/-|frameshift_variant REV__JAK2|p.P501Qfs*10|1|0.06|ENSG00000096968|chr9:5069193-5069193|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2748413085938 3 522.32682 1563.95863 NaN NaN NaN NaN NaN NaN NaN 67.075 1 63.966 63.466 64.466 -3.1086 0 0 0 0.22632 1 13007 13007 0.026206 0 1 + 37617 14626 25280 25296 36968 36968 0.1992107633022897 RFSCLRLFYNY 11 Unmodified _RFSCLRLFYNY_ 0 0 0 REV__nc|ENSG00000133612|Q96P47|AGAP3 REV__nc|ENSG00000133612|Q96P47|AGAP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 494.6993103027344 3 494.583456 1480.72854 NaN NaN NaN NaN NaN NaN NaN 79.219 1 75.414 74.914 75.914 -3.8048 0 0 0 0.22632 1 15028 15028 0.172 0 1 + 37618 16170 25281 25297 36969 36969 0.007404818824625181 RFSIRKQM 8 Unmodified _RFSIRKQM_ 0 0 0 REV__EXOC3|p.S619R|1|0.39|ENSG00000180104|chr5:465191-465191|C/G|missense_variant REV__EXOC3|p.S619R|1|0.39|ENSG00000180104|chr5:465191-465191|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2701416015625 2 533.302936 1064.59132 NaN NaN NaN NaN NaN NaN NaN 142.62 1 137.59 137.09 138.09 -5.0261 0 0 0 0.21039 1 27491 27491 16.942 5.302 1 + 37619 18675 25282 25298 36970 36970 0.06160617793534584 RFSSGKTK 8 Unmodified _RFSSGKTK_ 0 0 0 ENST00000585091.1_1_17:79977083-79977522:-|nuORF ENST00000585091.1_1_17:79977083-79977522:-|nuORF ENST00000585091.1_1_17:79977083-79977522:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.04010009765625 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 48.708 1 45.839 45.339 46.339 -2.869 0 0 0 0.21486 1 9217 9217 1.6526 0 1 37620 11528 25283 25299 36971 36971 0.04484320474580272 RFSSPCIF 8 Unmodified _RFSSPCIF_ 0 0 0 REV__ENSG00000175691|ENST00000314531|ZNF77 REV__ENSG00000175691|ENST00000314531|ZNF77 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7372741699219 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 121.56 1 121.56 121.06 122.06 0 0 0 0 0.2343 1 23963 23963 0.12286 0 1 + 37621 18484 25284 25300 36972 36972 -0.020938266631105762 RFSSPCIF 8 Unmodified _RFSSPCIF_ 0 0 0 REV__ENSG00000175691|ENST00000314531|ZNF77 REV__ENSG00000175691|ENST00000314531|ZNF77 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7367858886719 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 78.286 1 74.627 74.127 75.127 -3.6588 0 0 0 0.23107 1 14913 14913 0.25148 0 1 + 37622 18484 25284 25300 36973 36973 -0.020938266631105762 RFTNIGPD 8 Unmodified _RFTNIGPD_ 0 0 0 ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-5|FN1;ENST00000492816.6_1_2:216249553-216256565:-|nuORF;nc|ENSG00000115414|P02751-4|FN1;FN1|p.S1791Rfs*9|1|0.07|ENSG00000115414|chr2:215378239-215378239|A/-|frameshift_variant;FN1|p.L1714*|1|0.2|ENSG00000115414|chr2:215380832-215380832|G/-|frameshift_variant ENSG00000115414|ENST00000354785|FN1 ENSG00000115414|ENST00000354785|FN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23529052734375 2 460.235242 918.45593 -0.083138 -3.8263E-05 0.47573 0.00021895 0.3926 0.00018069 460.2354240916621 44.341 0.7928 41.575 41.008 41.801 -2.7661 38 22 2 0 0 0 0.58432 1 8065 8065 23.148 3.7094 1 1156800 37623 2853 25285 25301 36974 36974 -0.006559587964261482 RFWDYLRWVQT 11 Unmodified _RFWDYLRWVQT_ 0 0 0 CON__Q03247;ENSG00000130203|ENST00000252486|APOE CON__Q03247 CON__Q03247 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.399658203125 2 785.401692 1568.78883 NaN NaN NaN NaN NaN NaN NaN 15.606 1 14.384 13.884 14.884 -1.2219 0 0 0 0.22632 1 2198 2198 0.094841 0 1 + 37624 677 25286 25302 36975 36975 0.02718915537138855 RFWDYLRWVQT 11 Unmodified _RFWDYLRWVQT_ 0 0 0 CON__Q03247;ENSG00000130203|ENST00000252486|APOE CON__Q03247 CON__Q03247 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3997192382812 2 785.401692 1568.78883 NaN NaN NaN NaN NaN NaN NaN 106.83 1 102.42 101.92 102.92 -4.4121 0 0 0 0.22632 1 20497 20497 0.094841 0 1 + 37625 677 25286 25302 36976 36976 0.02718915537138855 RFWDYLRWVQT 11 Unmodified _RFWDYLRWVQT_ 0 0 0 CON__Q03247;ENSG00000130203|ENST00000252486|APOE CON__Q03247 CON__Q03247 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4019775390625 2 785.401692 1568.78883 NaN NaN NaN NaN NaN NaN NaN 49.668 1 46.662 46.162 47.162 -3.0068 0 0 0 0.22632 1 9113 9113 0.094841 0.068635 1 + 37626 677 25286 25302 36977 36977 0.02718915537138855 RFWIWERRWW 10 Unmodified _RFWIWERRWW_ 0 0 0 REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.367431640625 2 810.920387 1619.82622 NaN NaN NaN NaN NaN NaN NaN 159.1 1 154.31 153.81 154.81 -4.7952 0 0 0 0.22588 1 31637 31637 0.40072 0.1317 1 + 37627 23739 25287 25303 36978 36978 0.04110051593420394 RFWTRLYSLRA 11 Unmodified _RFWTRLYSLRA_ 0 0 0 REV__PLK1|p.P509S|1|0.48|ENSG00000166851|chr16:23689593-23689593|C/T|missense_variant REV__PLK1|p.P509S|1|0.48|ENSG00000166851|chr16:23689593-23689593|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2708435058594 3 490.277244 1467.8099 NaN NaN NaN NaN NaN NaN NaN 69.663 1 69.663 69.163 70.163 0 0 0 0 0.22632 1 13487 13487 1.4074 1.2964 1 + 37628 24487 25288 25304 36979 36979 0.09470925636719585 RFWTRLYSLRA 11 Unmodified _RFWTRLYSLRA_ 0 0 0 REV__PLK1|p.P509S|1|0.48|ENSG00000166851|chr16:23689593-23689593|C/T|missense_variant REV__PLK1|p.P509S|1|0.48|ENSG00000166851|chr16:23689593-23689593|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2593688964844 3 490.277244 1467.8099 NaN NaN NaN NaN NaN NaN NaN 144.81 1 140.14 139.64 140.64 -4.6694 0 0 0 0.22632 1 28688 28688 1.4551 0 1 + 37629 24487 25288 25304 36980 36980 0.09470925636719585 RFWWGLFRSLC 11 Unmodified _RFWWGLFRSLC_ 0 0 0 REV__nc|ENSG00000278845|Q9BRJ2|MRPL45 REV__nc|ENSG00000278845|Q9BRJ2|MRPL45 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 491.0534973144531 3 490.920291 1469.73905 NaN NaN NaN NaN NaN NaN NaN 8.3024 1 8.3024 7.8024 8.8024 0 0 0 0 0.23698 1 857 857 0 0 1 + 37630 24311 25289 25305 36981 36981 0.0229650932756158 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 555.2503051757812 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 165.61 1 160.66 160.16 161.16 -4.9484 0 0 0 0.23698 1 32374 32374 0 0 1 + 37631 20063 25290 25306 36982 36982 0.1520232432078501 RGAESVTLE 9 Unmodified _RGAESVTLE_ 0 0 0 REV__ENST00000463635.1_1_2:98736095-98738506:+|nuORF REV__ENST00000463635.1_1_2:98736095-98738506:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2477722167969 2 481.251089 960.487624 0.08258 3.9742E-05 -0.81517 -0.0003923 -0.73259 -0.00035256 481.2505084892255 37.909 2.4506 37.909 36.887 39.338 0 134 69 4 0 0 0 0.15214 3 6865 6865;7154;7201 43.858 18.459 1 99259000 + 37632 18042 25291 25307 36983;36984;36985 36983 0.005799891668630153 RGAESVTLE 9 Unmodified _RGAESVTLE_ 0 0 0 REV__ENST00000463635.1_1_2:98736095-98738506:+|nuORF REV__ENST00000463635.1_1_2:98736095-98738506:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23291015625 2 481.251089 960.487624 -0.20207 -9.7244E-05 -1.0036 -0.00048299 -1.2057 -0.00058023 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 0.1793 4 7608 7394;7584;7608;7680 39.957 10.876 1 85144000 + 37633 18042 25291 25307 36986;36987;36988;36989 36988 0.005799891668630153 RGAESVTLE 9 Unmodified _RGAESVTLE_ 0 0 0 REV__ENST00000463635.1_1_2:98736095-98738506:+|nuORF REV__ENST00000463635.1_1_2:98736095-98738506:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2483215332031 2 481.251089 960.487624 0.021637 1.0413E-05 -1.1165 -0.00053734 -1.0949 -0.00052693 481.2503997935835 40.302 3.026 37.762 36.657 39.683 -2.5398 141 85 2 0 0 0 0.15214 4 7329 7051;7329;7374;7424 43.858 15.371 1 101380000 + 37634 18042 25291 25307 36990;36991;36992;36993 36991 0.005799891668630153 RGAESVTLE 9 Unmodified _RGAESVTLE_ 0 0 0 REV__ENST00000463635.1_1_2:98736095-98738506:+|nuORF REV__ENST00000463635.1_1_2:98736095-98738506:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2488708496094 2 481.251089 960.487624 0.039845 1.9176E-05 -1.0501 -0.00050534 -1.0102 -0.00048616 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 0.40602 3 7287 7067;7287;7459 25.399 3.5669 1 69706000 + 37635 18042 25291 25307 36994;36995;36996 36995 0.005799891668630153 RGAKGHWP 8 Unmodified _RGAKGHWP_ 0 0 0 ENST00000470876.1_1_5:133900168-133909634:+|nuORF ENST00000470876.1_1_5:133900168-133909634:+|nuORF ENST00000470876.1_1_5:133900168-133909634:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.02410888671875 3 303.499833 907.477669 -0.52995 -0.00016084 0.11495 3.4887E-05 -0.41501 -0.00012595 303.4994251830206 18.914 0.24201 18.914 18.754 18.996 0 11 6 3 0 0 0 1.0281 1 3048 3048 0 0 1 604370 37636 10204 25292 25308 36997 36997 0.020228907428077036 RGAKGHWP 8 Unmodified _RGAKGHWP_ 0 0 0 ENST00000470876.1_1_5:133900168-133909634:+|nuORF ENST00000470876.1_1_5:133900168-133909634:+|nuORF ENST00000470876.1_1_5:133900168-133909634:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 303.499833 907.477669 -1.5427 -0.00046821 0.25689 7.7966E-05 -1.2858 -0.00039024 303.4998022344393 20.515 0.31604 18.794 18.624 18.94 -1.7211 -0.060325 2.0515E-05 NaN 0 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 209930 37637 10204 25292 25308 0.020228907428077036 RGALTDESL 9 Unmodified _RGALTDESL_ 0 0 0 REV__ENSG00000198265|ENST00000358691|HELZ REV__ENSG00000198265|ENST00000358691|HELZ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25091552734375 2 481.251089 960.487624 0.02893 1.3922E-05 0.76575 0.00036852 0.79468 0.00038244 481.2514135573215 60.355 0.68763 57.422 57.065 57.752 -2.9333 23 19 2 0 0 0 0.067773 1 11574 11574 65.235 7.513 1 1236900 + 37638 19400 25293 25309 36998 36998 0.005799891668516466 RGALTDESL 9 Unmodified _RGALTDESL_ 0 0 0 REV__ENSG00000198265|ENST00000358691|HELZ REV__ENSG00000198265|ENST00000358691|HELZ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2507629394531 2 481.251089 960.487624 0.099727 4.7994E-05 0.5569 0.00026801 0.65663 0.000316 481.2511786195053 60.74 0.59968 57.516 57.134 57.734 -3.2237 24 16 2 0 0 0 0.17935 1 11310 11310 39.95 7.6442 1 2254500 + 37639 19400 25293 25309 36999 36999 0.005799891668516466 RGAPAAHRA 9 Unmodified _RGAPAAHRA_ 0 0 0 REV__ENST00000374232.7_1_9:115513139-115513385:+|nuORF REV__ENST00000374232.7_1_9:115513139-115513385:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75250244140625 2 453.754467 905.494381 NaN NaN NaN NaN NaN NaN NaN 173.71 1 168.92 168.42 169.42 -4.7898 0 0 0 0.23508 1 35454 35454 7.9102 2.1497 1 + 37640 21054 25294 25310 37000 37000 0.03785391628741763 RGAPPRHE 8 Unmodified _RGAPPRHE_ 0 0 0 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24700927734375 2 460.246475 918.478397 NaN NaN NaN NaN NaN NaN NaN 137.81 1 137.81 137.31 138.31 0 0 0 0 0.21486 1 27343 27343 7.9102 0 1 37641 4030 25295 25311 37001 37001 0.015896853918548004 RGASSVEKPSF 11 Unmodified _RGASSVEKPSF_ 0 0 0 REV__ENSG00000170684|ENST00000303809|ZNF296 REV__ENSG00000170684|ENST00000303809|ZNF296 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 390.1963806152344 3 388.871772 1163.59349 -0.14908 -5.7972E-05 1.1718 0.00045569 1.0227 0.00039772 388.872253119502 18.004 0.67002 18.004 17.767 18.437 0 55 18 5 0 0 0 0.58302 1 2850 2850 0.03141 0 1 42782000 + 37642 18176 25296 25312 37002 37002 0.018233250123330436 RGASSVEKPSF 11 Unmodified _RGASSVEKPSF_ 0 0 0 REV__ENSG00000170684|ENST00000303809|ZNF296 REV__ENSG00000170684|ENST00000303809|ZNF296 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 388.871772 1163.59349 -0.14908 -5.7972E-05 1.1718 0.00045569 1.0227 0.00039772 388.872253119502 18.004 0.67002 18.004 17.767 18.437 0 -0.11527 -0.00015787 NaN 0.03141 55 18 5 NaN NaN NaN NaN 0 NaN NaN 0 42782000 + 37643 18176 25296 25312 0.018233250123330436 RGASSVEKPSF 11 Unmodified _RGASSVEKPSF_ 0 0 0 REV__ENSG00000170684|ENST00000303809|ZNF296 REV__ENSG00000170684|ENST00000303809|ZNF296 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 388.871772 1163.59349 -0.053724 -2.0892E-05 1.3009 0.00050589 1.2472 0.00048499 388.87225537621464 19.623 0.76567 18.226 18.029 18.795 -1.3966 0.10636 -7.2796E-06 NaN 0.03141 59 21 5 NaN NaN NaN NaN 0 NaN NaN 0 33218000 + 37644 18176 25296 25312 0.018233250123330436 RGASSVEKPSF 11 Unmodified _RGASSVEKPSF_ 0 0 0 REV__ENSG00000170684|ENST00000303809|ZNF296 REV__ENSG00000170684|ENST00000303809|ZNF296 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 388.871772 1163.59349 -0.31604 -0.0001229 1.4479 0.00056306 1.1319 0.00044016 388.87237342252695 19.454 1.0449 18.128 17.931 18.976 -1.3251 0.0089031 0.00016425 NaN 0.03141 67 29 5 NaN NaN NaN NaN 0 NaN NaN 0 48446000 + 37645 18176 25296 25312 0.018233250123330436 RGCCGGCC 8 Unmodified _RGCCGGCC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 762.2217407226562 1 758.220081 757.212805 0.47098 0.0003571 -1.9003 -0.0014409 -1.4293 -0.0010838 758.2219685192969 178.58 2.0595 178.58 177.96 180.02 0 233 58 5 0 0 0 0.89856 1 37271 37271 0 0 1 2830600 37646 12644 25297 25313 37003 37003 -0.1755130938063303 RGCCGGCC 8 Unmodified _RGCCGGCC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 759.2437744140625 1 758.220081 757.212805 -0.050911 -3.8602E-05 -0.34863 -0.00026434 -0.39954 -0.00030294 758.2222973496494 7.4042 3.7248 6.725 3.7817 7.5065 -0.67913 244 104 4 0 0 0 0.89856 3 322 322;374;410 0 0 1 1127400 37647 12644 25297 25313 37004;37005;37006 37004 -0.1755130938063303 RGCCGGCC 8 Unmodified _RGCCGGCC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 758.7305908203125 1 758.220081 757.212805 -0.051435 -3.8999E-05 -1.1659 -0.00088399 -1.2173 -0.00092299 758.222250650969 8.4238 1.4562 7.7447 7.0127 8.4689 -0.67913 116 41 4 0 0 0 0.9003 1 744 744 0 0 1 1225000 37648 12644 25297 25313 37007 37007 -0.1755130938063303 RGCCGGCC 8 Unmodified _RGCCGGCC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 760.240478515625 1 758.220081 757.212805 0.17494 0.00013264 -1.8887 -0.001432 -1.7137 -0.0012994 758.2219671418758 42.196 0.52975 39.546 39.178 39.708 -2.651 26 14 4 0 0 0 0.89856 1 7576 7576 0 0 1 2520300 37649 12644 25297 25313 37008 37008 -0.1755130938063303 RGCCGGCC 8 Unmodified _RGCCGGCC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 758.72412109375 1 758.220081 757.212805 -0.4386 -0.00033256 -0.45719 -0.00034665 -0.89579 -0.00067921 758.2226699231547 8.4691 1.1474 7.4046 7.0789 8.2263 -1.0645 102 32 4 0 0 0 0.9003 1 967 967 0 0 1 1317500 37650 12644 25297 25313 37009 37009 -0.1755130938063303 RGCCGGCC 8 Unmodified _RGCCGGCC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 761.2201538085938 1 758.220081 757.212805 -1.4155 -0.0010732 -0.31077 -0.00023563 -1.7262 -0.0013089 758.2233338597505 7.6671 1.7813 6.6523 5.6236 7.4049 -1.0148 215 50 5 0 0 0 8448 1 583 583 0 0 1 4217200 37651 12644 25297 25313 37010 37010 -0.1755130938063303 RGCCGGCC 8 Unmodified _RGCCGGCC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 760.2223510742188 1 758.220081 757.212805 0.23353 0.00017706 -0.46594 -0.00035328 -0.23241 -0.00017622 758.221889075328 41.459 1.1282 38.969 38.565 39.694 -2.4896 69 31 3 0 0 0 0.89856 1 7454 7454 0 0 1 967830 37652 12644 25297 25313 37011 37011 -0.1755130938063303 RGCCGGCC 8 Unmodified _RGCCGGCC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 760.7088012695312 1 758.220081 757.212805 0.71438 0.00054165 -1.8272 -0.0013854 -1.1128 -0.00084373 758.2216995285512 178.71 1.9499 173.8 173.15 175.1 -4.9088 192 55 4 0 0 0 8448 1 35801 35801 0 0 1 3511100 37653 12644 25297 25313 37012 37012 -0.1755130938063303 RGCCGGCC 8 Unmodified _RGCCGGCC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 757.7191772460938 1 758.220081 757.212805 -1.4157 -0.0010734 -0.55975 -0.00042441 -1.9754 -0.0014978 758.2234170789911 8.5895 1.2415 7.5549 7.0262 8.2678 -1.0347 124 34 6 0 0 0 0.9003 1 923 923 0 0 1 2084800 37654 12644 25297 25313 37013 37013 -0.1755130938063303 RGCCGGCC 8 Unmodified _RGCCGGCC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 758.220081 757.212805 0.87268 0.00066168 -1.5276 -0.0011582 -0.65491 -0.00049656 758.2214875861192 178.27 1.9483 173.48 173.25 175.19 -4.7898 -0.17025 -0.00030988 NaN 0 200 55 4 NaN NaN NaN NaN 0 NaN NaN 0 2364900 37655 12644 25297 25313 -0.1755130938063303 RGCCGGCC 8 Unmodified _RGCCGGCC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 758.220081 757.212805 0.4283 0.00032474 0.044745 3.3927E-05 0.47304 0.00035867 758.2221225181273 178.54 1.049 173.67 173.24 174.29 -4.8686 0.017884 0.0008823 NaN 0 57 29 3 NaN NaN NaN NaN 0 NaN NaN 0 1062600 37656 12644 25297 25313 -0.1755130938063303 RGCCGGCC 8 Unmodified _RGCCGGCC_ 0 0 0 nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284667|A0A286YF46|SCYGR5 nc|ENSG00000284667|A0A286YF46|SCYGR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 758.220081 757.212805 -0.43861 -0.00033256 -0.82568 -0.00062604 -1.2643 -0.00095861 758.2225842216698 7.8334 2.3956 6.7888 4.8065 7.202 -1.0446 0.066761 -0.00029864 NaN 0 183 68 4 NaN NaN NaN NaN 0 NaN NaN 0 1416600 37657 12644 25297 25313 -0.1755130938063303 RGDGSIVYL 9 Unmodified _RGDGSIVYL_ 0 0 0 VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;ENSG00000175073|ENST00000310421|VCPIP1 VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.264404296875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 98.523 1 98.523 98.023 99.023 0 0 0 0 0.18489 1 19314 19314 18.614 18.234 1 37658 6384 25298 25314 37014 37014 0.023328834091330464 RGDGSIVYL 9 Unmodified _RGDGSIVYL_ 0 0 0 VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;ENSG00000175073|ENST00000310421|VCPIP1 VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2641296386719 2 490.263999 978.513445 0.080788 3.9608E-05 0.21972 0.00010772 0.3005 0.00014733 490.2641523399602 102.54 0.52681 98.359 98.027 98.554 -4.1861 21 14 2 0 0 0 0.25976 1 20149 20149 22.621 18.144 1 1418700 37659 6384 25298 25314 37015 37015 0.023328834091330464 RGDGSIVYL 9 Unmodified _RGDGSIVYL_ 0 0 0 VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;ENSG00000175073|ENST00000310421|VCPIP1 VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2636413574219 2 490.263999 978.513445 0.37748 0.00018506 0.58669 0.00028763 0.96416 0.00047269 490.264405409272 102.73 0.90856 98.413 98.045 98.954 -4.3208 30 25 2 0 0 0 0.25976 1 19636 19636 17.113 16.861 1 1115300 37660 6384 25298 25314 37016 37016 0.023328834091330464 RGDGSIVYL 9 Unmodified _RGDGSIVYL_ 0 0 0 VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant;ENSG00000175073|ENST00000310421|VCPIP1 VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2648620605469 2 490.263999 978.513445 0.27829 0.00013644 0.5434 0.00026641 0.8217 0.00040285 490.2643432041311 102.48 0.57997 98.46 98.009 98.589 -4.0212 21 16 2 0 0 0 0.25976 1 19685 19685 18.614 16.872 1 937770 37661 6384 25298 25314 37017 37017 0.023328834091330464 RGDHYLWVKFY 11 Unmodified _RGDHYLWVKFY_ 0 0 0 REV__nc|ENSG00000110090|P50416-2|CPT1A REV__nc|ENSG00000110090|P50416-2|CPT1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3790893554688 2 742.377686 1482.74082 NaN NaN NaN NaN NaN NaN NaN 80.809 1 80.809 80.309 81.309 0 0 0 0 0.22632 1 15734 15734 0.00056442 0 1 + 37662 15192 25299 25315 37018 37018 0.018758416171067438 RGDHYLWVKFY 11 Unmodified _RGDHYLWVKFY_ 0 0 0 REV__nc|ENSG00000110090|P50416-2|CPT1A REV__nc|ENSG00000110090|P50416-2|CPT1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3770751953125 2 742.377686 1482.74082 NaN NaN NaN NaN NaN NaN NaN 153.97 1 148.7 148.2 149.2 -5.2669 0 0 0 0.22632 1 29854 29854 0.0059557 0 1 + 37663 15192 25299 25315 37019 37019 0.018758416171067438 RGDHYLWVKFY 11 Unmodified _RGDHYLWVKFY_ 0 0 0 REV__nc|ENSG00000110090|P50416-2|CPT1A REV__nc|ENSG00000110090|P50416-2|CPT1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3809204101562 2 742.377686 1482.74082 NaN NaN NaN NaN NaN NaN NaN 141.26 1 136.39 135.89 136.89 -4.8678 0 0 0 0.22632 1 27258 27258 0.00056442 0 1 + 37664 15192 25299 25315 37020 37020 0.018758416171067438 RGDIESLTA 9 Unmodified _RGDIESLTA_ 0 0 0 REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1 REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24859619140625 2 481.251089 960.487624 0.08258 3.9742E-05 -0.81517 -0.0003923 -0.73259 -0.00035256 481.2505084892255 37.909 2.4506 37.909 36.887 39.338 0 134 69 4 0 0 0 0.13932 5 6957 6951;6957;7053;7104;7236 45.7 12.914 1 99259000 + 37665 25278 25300 25316 37021;37022;37023;37024;37025 37022 0.005799891668630153 RGDIESLTA 9 Unmodified _RGDIESLTA_ 0 0 0 REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1 REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2508544921875 2 481.251089 960.487624 -0.20207 -9.7244E-05 -1.0036 -0.00048299 -1.2057 -0.00058023 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 0.086396 2 7493 7493;7540 60.074 11.298 1 85144000 + 37666 25278 25300 25316 37026;37027 37026 0.005799891668630153 RGDIESLTA 9 Unmodified _RGDIESLTA_ 0 0 0 REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1 REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25079345703125 2 481.251089 960.487624 0.021637 1.0413E-05 -1.1165 -0.00053734 -1.0949 -0.00052693 481.2503997935835 40.302 3.026 37.762 36.657 39.683 -2.5398 141 85 2 0 0 0 0.086396 4 7189 7189;7235;7278;7281 60.074 14.374 1 101380000 + 37667 25278 25300 25316 37028;37029;37030;37031 37028 0.005799891668630153 RGDIESLTA 9 Unmodified _RGDIESLTA_ 0 0 0 REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1 REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2509460449219 2 481.251089 960.487624 0.039845 1.9176E-05 -1.0501 -0.00050534 -1.0102 -0.00048616 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 0.086396 4 7195 7154;7195;7240;7283 60.074 12.48 1 69706000 + 37668 25278 25300 25316 37032;37033;37034;37035 37033 0.005799891668630153 RGDSVIVVL 9 Unmodified _RGDSVIVVL_ 0 0 0 nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73919677734375 2 479.290017 956.565481 0.14784 7.086E-05 -0.053838 -2.5804E-05 0.094006 4.5056E-05 479.2899665309635 129.59 0.99112 124.85 124.33 125.32 -4.7408 68 27 3 0 0 0 0.38759 1 24989 24989 22.736 12.662 1 9684600 37669 3382 25301 25317 37036 37036 0.08546046822914377 RGEFGAFVP 9 Unmodified _RGEFGAFVP_ 0 0 0 REV__nc|ENSG00000224287|P0C860|MSL3B REV__nc|ENSG00000224287|P0C860|MSL3B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2551574707031 2 490.253434 978.492316 NaN NaN NaN NaN NaN NaN NaN 86.741 1 82.79 82.29 83.29 -3.9503 0 0 0 0.23508 1 16513 16513 11.64 1.4569 1 + 37670 24276 25302 25318 37037 37037 0.002209181002854166 RGEIQTLY 8 Unmodified _RGEIQTLY_ 0 0 0 nc|ENSG00000053108|Q6MZW2-2|FSTL4;FSTL4|p.G790Vfs*6|1|0.38|ENSG00000053108|chr5:133199255-133199255|C/-|frameshift_variant;ENSG00000053108|ENST00000265342|FSTL4;ENST00000509525.5_1_5:132534789-132560973:-|nuORF nc|ENSG00000053108|Q6MZW2-2|FSTL4 nc|ENSG00000053108|Q6MZW2-2|FSTL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2659912109375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 178.97 1 178.97 178.47 179.47 0 0 0 0 0.21486 1 37071 37071 2.3027 0 1 37671 1254 25303 25319 37038 37038 0.02332883409144415 RGEQKQFAT 9 Unmodified _RGEQKQFAT_ 0 0 0 REV__nc|ENSG00000196345|Q9P0L1-2|ZKSCAN7 REV__nc|ENSG00000196345|Q9P0L1-2|ZKSCAN7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2782592773438 2 532.777805 1063.54106 0.27555 0.00014681 -0.25179 -0.00013415 0.023763 1.2661E-05 532.7776818242285 22.233 0.87785 20.78 20.562 21.44 -1.4535 31 24 2 0 0 0 0.58804 1 3526 3526 13.906 2.2658 1 487680 + 37672 19235 25304 25320 37039 37039 0.011827866693693068 RGEQQLRRDYG 11 Unmodified _RGEQQLRRDYG_ 0 0 0 nc|ENSG00000111325|Q6N063-3|OGFOD2;ENST00000545396.5_1_12:123459798-123462874:+|nuORF;ENST00000540866.2_1_12:123459879-123461705:+|nuORF;OGFOD2|p.P119Qfs*55|1|0.17|ENSG00000111325|chr12:122976920-122976920|C/-|frameshift_variant;ENST00000420319.6_1_12:123459798-123461705:+|nuORF;ENSG00000111325|ENST00000228922|OGFOD2 nc|ENSG00000111325|Q6N063-3|OGFOD2 nc|ENSG00000111325|Q6N063-3|OGFOD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24102783203125 3 459.904246 1376.69091 NaN NaN NaN NaN NaN NaN NaN 16.91 1 15.638 15.138 16.138 -1.2722 0 0 0 0.23698 1 2460 2460 0.50596 0.09769 1 37673 2617 25305 25321 37040 37040 0.017631069411663702 RGERGPPGPG 10 Unmodified _RGERGPPGPG_ 0 0 0 COL7A1|p.P1441Lfs*269|1|0.36|ENSG00000114270|chr3:48583737-48583737|G/-|frameshift_variant;COL7A1|p.P1754Qfs*87|1|0.6|ENSG00000114270|chr3:48579490-48579490|G/-|frameshift_variant;COL7A1|p.P1990Qfs*15|1|0.14|ENSG00000114270|chr3:48575636-48575636|G/-|frameshift_variant;COL7A1|p.P2029Lfs*177|2|0.43|ENSG00000114270|chr3:48575438-48575438|G/-|frameshift_variant;ENST00000487017.5_1_3:48609337-48621784:-|nuORF;COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant;COL7A1|p.G2177Wfs*113|1|0.1|ENSG00000114270|chr3:48573864-48573865|-/G|frameshift_variant;COL7A1|p.P2298Lfs*90|1|0.18|ENSG00000114270|chr3:48572678-48572678|G/-|frameshift_variant;COL7A1|p.S2715Vfs*71|1|0.4|ENSG00000114270|chr3:48566991-48566991|G/-|frameshift_variant;nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1 COL7A1|p.P1441Lfs*269|1|0.36|ENSG00000114270|chr3:48583737-48583737|G/-|frameshift_variant;ENST00000487017.5_1_3:48609337-48621784:-|nuORF ENST00000487017.5_1_3:48609337-48621784:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25579833984375 2 490.25704 978.499526 NaN NaN NaN NaN NaN NaN NaN 19.761 1 18.126 17.626 18.626 -1.6351 0 0 0 0.22588 1 3002 3002 13.042 0 1 37674 10462;632 25306 25322 37041 37041 0.009416507007131258 RGERTYCA 8 Unmodified _RGERTYCA_ 0 0 0 REV__nc|ENSG00000164050|O43157-2|PLXNB1 REV__nc|ENSG00000164050|O43157-2|PLXNB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.1902770996094 3 319.151993 954.434149 NaN NaN NaN NaN NaN NaN NaN 127.85 1 123.06 122.56 123.56 -4.7958 0 0 0 0.21486 1 24541 24541 0.45834 0 1 + 37675 17641 25307 25323 37042 37042 -0.04489086816670351 RGFPGPPGM 9 Unmodified _RGFPGPPGM_ 0 0 0 CON__P04258 CON__P04258 CON__P04258 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22918701171875 2 458.228905 914.443257 NaN NaN NaN NaN NaN NaN NaN 150.85 1 145.61 145.11 146.11 -5.2365 0 0 0 0.19652 1 29233 29233 0.12781 0 1 + 37676 657 25308 25324 37043 37043 -0.017386934603109694 RGGGAAGG 8 Unmodified _RGGGAAGG_ 0 0 0 REV__ENST00000260563.4_1_1:100731885-100733749:+|nuORF REV__ENST00000260563.4_1_1:100731885-100733749:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3013305664062 1 602.300498 601.293222 0.3925 0.0002364 1.6203 0.00097592 2.0128 0.0012123 602.3036989810101 141.4 0.20302 141.4 141.3 141.5 0 6 5 2 0 0 0 0.89856 1 28176 28176 0 0 1 4870200 + 37677 20158 25309 25325 37044 37044 -0.023372974077574327 RGGGAAGG 8 Unmodified _RGGGAAGG_ 0 0 0 REV__ENST00000260563.4_1_1:100731885-100733749:+|nuORF REV__ENST00000260563.4_1_1:100731885-100733749:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2737426757812 1 602.300498 601.293222 0.3925 0.0002364 1.6203 0.00097592 2.0128 0.0012123 602.3036989810101 141.4 0.20302 141.4 141.3 141.5 0 6 5 2 0 0 0 1.0282 1 28187 28187 0 0 1 4870200 + 37678 20158 25309 25325 37045 37045 -0.023372974077574327 RGGGAAGG 8 Unmodified _RGGGAAGG_ 0 0 0 REV__ENST00000260563.4_1_1:100731885-100733749:+|nuORF REV__ENST00000260563.4_1_1:100731885-100733749:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2894287109375 1 602.300498 601.293222 1.009 0.00060771 1.5594 0.00093925 2.5684 0.001547 602.3057252698728 130.48 0.17946 125.85 125.68 125.86 -4.6359 5 4 2 0 0 0 0.9003 1 25692 25692 0 0 1 855980 + 37679 20158 25309 25325 37046 37046 -0.023372974077574327 RGGGCGGGG 9 Unmodified _RGGGCGGGG_ 0 0 0 ENST00000407595.2_1_2:56411641-56419673:+|nuORF ENST00000407595.2_1_2:56411641-56419673:+|nuORF ENST00000407595.2_1_2:56411641-56419673:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.1905517578125 2 339.14283 676.271106 NaN NaN NaN NaN NaN NaN NaN 75.835 1 72.201 71.701 72.701 -3.6337 0 0 0 0.19635 1 14422 14422 0 0 1 37680 9551 25310 25326 37047 37047 -0.07997845147826865 RGGGGAGA 8 Unmodified _RGGGGAGA_ 0 0 0 PDCD7|p.K308Nfs*18|1|0.15|ENSG00000090470|chr15:65129117-65129117|T/-|frameshift_variant;ENSG00000090470|ENST00000204549|PDCD7;ENST00000467087.5_2_4:26862323-26862563:+|nuORF PDCD7|p.K308Nfs*18|1|0.15|ENSG00000090470|chr15:65129117-65129117|T/-|frameshift_variant PDCD7|p.K308Nfs*18|1|0.15|ENSG00000090470|chr15:65129117-65129117|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2786865234375 1 602.300498 601.293222 0.47699 0.00028729 -1.195 -0.00071972 -0.71796 -0.00043243 602.3016485179111 155.07 0.14346 149.81 149.72 149.87 -5.2526 5 3 2 0 0 0 0.9003 1 30066 30066 0 0 1 757130 37681 1786 25311 25327 37048 37048 -0.023372974077688013 RGGGGGHR 8 Unmodified _RGGGGGHR_ 0 0 0 REV__ENST00000327582.5_1_1:40236142-40236292:-|nuORF REV__ENST00000327582.5_1_1:40236142-40236292:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.5523681640625 2 377.196785 752.379017 NaN NaN NaN NaN NaN NaN NaN 78.027 1 78.027 77.527 78.527 0 0 0 0 0.2396 1 15182 15182 0.12286 0 1 + 37682 20592 25312 25328 37049 37049 -0.007077125022533437 RGGGGGPA 8 Unmodified _RGGGGGPA_ 0 0 0 SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.G1860Efs*9|1|0.33|ENSG00000065526|chr1:15931816-15931816|G/-|frameshift_variant;SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant;ENSG00000065526|ENST00000375759|SPEN;SPEN|p.I1052Sfs*40|1|0.35|ENSG00000065526|chr1:15929388-15929388|A/-|frameshift_variant;SPEN|p.I1159Lfs*28|1|0.25|ENSG00000065526|chr1:15929710-15929710|A/-|frameshift_variant;SPEN|p.N788Kfs*2|1|0.3|ENSG00000065526|chr1:15928597-15928598|-/A|frameshift_variant;ENST00000371095.7_1_20:57466410-57466719:+|nuORF SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.6612243652344 2 314.661712 627.308872 NaN NaN NaN NaN NaN NaN NaN 68.815 1 65.278 64.778 65.778 -3.5362 0 0 0 0.2396 1 12944 12944 0 0 1 37683 25781 25313 25329 37050 37050 -0.019690108907298054 RGGGLWFMY 9 Unmodified _RGGGLWFMY_ 0 0 0 REV__SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant REV__SPATA16|p.T413Hfs*5|1|0.44|ENSG00000144962|chr3:172924309-172924309|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7828979492188 2 543.763112 1085.51167 0.26773 0.00014558 -3.1975 -0.0017387 -2.9298 -0.0015931 543.7598482502824 141.19 0.47971 136.54 136.37 136.85 -4.6493 13 13 2 0 0 0 0.21803 1 27926 27926 7.4771 7.0688 1 1979700 + 37684 16813 25314 25330 37051 37051 -0.02766448880470307 RGGTGQFG 8 Unmodified _RGGTGQFG_ 0 0 0 REV__ENST00000541607.1_1_9:37575600-37576341:-|nuORF REV__ENST00000541607.1_1_9:37575600-37576341:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 390.25933837890625 2 390.193377 778.372201 NaN NaN NaN NaN NaN NaN NaN 50.33 1 50.33 49.83 50.83 0 0 0 0 0.21486 1 9529 9529 8.5933 0 1 + 37685 22866 25315 25331 37052 37052 -0.02585070173472559 RGHDUARG 8 Unmodified _RGHDUARG_ 0 0 0 nc|ENSG00000211452|P49895-8|DIO1;nc|ENSG00000211452|P49895-9|DIO1 nc|ENSG00000211452|P49895-8|DIO1 nc|ENSG00000211452|P49895-8|DIO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.17242431640625 2 460.173436 918.332318 NaN NaN NaN NaN NaN NaN NaN 5.579 1 5.579 5.079 6.079 0 0 0 0 0.21486 1 313 313 0 0 0 37686 12569 25316 25332 37053 37053 -0.13011440679133557 RGHQDLQLS 9 Unmodified _RGHQDLQLS_ 0 0 0 COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant;COL15A1|p.E1069Rfs*84|1|0.36|ENSG00000204291|chr9:99056264-99056264|A/-|frameshift_variant COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 351.8526306152344 3 351.852712 1052.53631 NaN NaN NaN NaN NaN NaN NaN 21.499 1 21.499 20.999 21.999 0 0 0 0 0.23508 1 3601 3601 2.4985 0 1 37687 613 25317 25333 37054 37054 0.012139025266151293 RGIYSKKQ 8 Unmodified _RGIYSKKQ_ 0 0 0 ENSG00000137727|ENST00000683387|ARHGAP20;nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20;ARHGAP20|p.K870E|1|0.04|ENSG00000137727|chr11:110580338-110580338|T/C|missense_variant ENSG00000137727|ENST00000683387|ARHGAP20 ENSG00000137727|ENST00000683387|ARHGAP20 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2628173828125 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 142.92 1 138.02 137.52 138.52 -4.8982 0 0 0 0.23025 1 27582 27582 0.62683 0 1 37688 4101 25318 25334 37055 37055 0.07092582399991443 RGKFVTAA 8 Unmodified _RGKFVTAA_ 0 0 0 ENST00000305557.9_1_2:74666917-74667613:-|nuORF ENST00000305557.9_1_2:74666917-74667613:-|nuORF ENST00000305557.9_1_2:74666917-74667613:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2525939941406 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 177.38 1 172.51 172.01 173.01 -4.8686 0 0 0 0.21486 1 35300 35300 2.5775 0 1 37689 8604 25319 25335 37056 37056 0.05653239308469438 RGKKKKKKS 9 Unmodified _RGKKKKKKS_ 0 0 0 ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.N409Kfs*17|1|0.25|ENSG00000139767|chr12:119151159-119151160|-/C|frameshift_variant;SRRM4|p.R117Q|1|0.16|ENSG00000139767|chr12:119114349-119114349|G/A|missense_variant ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.17230224609375 3 363.252258 1086.73495 NaN NaN NaN NaN NaN NaN NaN 42.16 1 42.16 41.66 42.66 0 0 0 0 0.19631 1 7880 7880 0.073264 0 1 37690 4266 25320 25336 37057 37057 0.19504787896130438 RGKPHFHA 8 Unmodified _RGKPHFHA_ 0 0 0 REV__ZNF365|p.K399Sfs*6|3|0.2|ENSG00000138311|chr10:62399754-62399754|A/-|frameshift_variant REV__ZNF365|p.K399Sfs*6|3|0.2|ENSG00000138311|chr10:62399754-62399754|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.15521240234375 3 317.175349 948.504218 NaN NaN NaN NaN NaN NaN NaN 13.185 1 12.064 11.564 12.564 -1.1206 0 0 0 0.21486 1 1643 1643 0 0 1 + 37691 16450 25321 25337 37058 37058 0.027905796341201494 RGKRAKDT 8 Unmodified _RGKRAKDT_ 0 0 0 ENST00000495510.1_1_13:36900679-36920374:-|nuORF;SPG20|p.T655Rfs*4|1|0.63|ENSG00000133104|chr13:36304402-36304402|G/-|frameshift_variant;ENSG00000133104|ENST00000438666|SPART ENST00000495510.1_1_13:36900679-36920374:-|nuORF ENST00000495510.1_1_13:36900679-36920374:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.25469970703125 3 311.185914 930.535912 NaN NaN NaN NaN NaN NaN NaN 98.642 1 98.642 98.142 99.142 0 0 0 0 0.21486 1 19336 19336 0.40072 0 1 37692 3783 25322 25338 37059 37059 0.06786527597398617 RGLDDIKDLKV 11 Unmodified _RGLDDIKDLKV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2515869140625 3 424.58211 1270.7245 0.4081 0.00017327 -0.1825 -7.7485E-05 0.2256 9.5787E-05 424.58192318841674 108.02 0.66934 103.88 103.52 104.19 -4.135 45 18 3 0 0 0 0.52977 1 20778 20778 21.666 9.4385 1 3005400 37693 5044 25323 25339 37060 37060 0.09996715660349764 RGLDDIKDLKV 11 Unmodified _RGLDDIKDLKV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 424.58211 1270.7245 -0.65256 -0.00027707 0.81937 0.00034789 0.1668 7.0822E-05 424.58239205279233 108.11 0.58663 103.79 103.45 104.04 -4.32 -0.070027 0.00064081 NaN 21.666 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3946900 37694 5044 25323 25339 0.09996715660349764 RGLDDIKDLKV 11 Unmodified _RGLDDIKDLKV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 424.58211 1270.7245 -0.13031 -5.5329E-05 0.3488 0.00014809 0.21849 9.2765E-05 424.58218446807984 108.31 0.71853 103.9 103.47 104.19 -4.4121 0.042141 4.1428E-05 NaN 21.666 53 20 4 NaN NaN NaN NaN 0 NaN NaN 0 4290300 37695 5044 25323 25339 0.09996715660349764 RGLEQFSA 8 Unmodified _RGLEQFSA_ 0 0 0 CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant;ENSG00000124177|ENST00000373233|CHD6 CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.751220703125 2 454.235242 906.45593 0.5809 0.00026386 0.19598 8.9022E-05 0.77688 0.00035289 454.23552377780874 45.868 1.6404 45.868 45.518 47.158 0 67 46 3 0 0 0 0.96284 1 8715 8715 13.508 0 1 3553800 37696 516 25324 25340 37061 37061 -0.0010395879643283479 RGLRGVPERDR 11 Unmodified _RGLRGVPERDR_ 0 0 0 ENSG00000267909|ENST00000599174|CCDC177 ENSG00000267909|ENST00000599174|CCDC177 ENSG00000267909|ENST00000599174|CCDC177 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21710205078125 3 437.584848 1309.73271 0.2184 9.557E-05 -1.5497 -0.00067814 -1.3313 -0.00058257 437.58425317412133 20.732 0.21371 19.335 19.249 19.463 -1.3966 8 5 2 0 0 0 0.96197 1 3489 3489 2.6312 2.1253 1 434790 37697 7991 25325 25341 37062 37062 0.09023707420351457 RGLVLSTVFN 10 Unmodified _RGLVLSTVFN_ 0 0 0 ENSG00000273238|ENST00000610212|TMEM271 ENSG00000273238|ENST00000610212|TMEM271 ENSG00000273238|ENST00000610212|TMEM271 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 369.5325927734375 3 369.216991 1104.62914 0.30068 0.00011102 1.1345 0.00041888 1.4352 0.0005299 369.2175165637478 29.89 0.41364 27.773 27.634 28.048 -2.1167 16 11 2 0 0 0 0.51405 1 5384 5384 3.8763 3.669 1 411820 37698 8010 25326 25342 37063 37063 0.08101407260005544 RGLYVSPTS 9 Unmodified _RGLYVSPTS_ 0 0 0 REV__ENST00000491285.1_1:146215077-146250826:-|nuORF REV__ENST00000491285.1_1:146215077-146250826:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2647399902344 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.74 1 175.74 175.24 176.24 0 0 0 0 0.23508 1 36405 36405 3.9444 0.3479 1 + 37699 22316 25327 25343 37064 37064 0.023328834091330464 RGLYVSPTS 9 Unmodified _RGLYVSPTS_ 0 0 0 REV__ENST00000491285.1_1:146215077-146250826:-|nuORF REV__ENST00000491285.1_1:146215077-146250826:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2648620605469 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.99 1 171.11 170.61 171.61 -4.8739 0 0 0 0.19649 1 35000 35000 0.40827 0.2854 1 + 37700 22316 25327 25343 37065 37065 0.023328834091330464 RGLYVSPTS 9 Unmodified _RGLYVSPTS_ 0 0 0 REV__ENST00000491285.1_1:146215077-146250826:-|nuORF REV__ENST00000491285.1_1:146215077-146250826:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2654113769531 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 175.62 1 170.72 170.22 171.22 -4.9008 0 0 0 0.19679 1 35004 35004 0.40827 0 1 + 37701 22316 25327 25343 37066 37066 0.023328834091330464 RGMGLGNG 8 Unmodified _RGMGLGNG_ 0 0 0 REV__ENST00000343053.4_2_9:140149884-140150010:+|nuORF REV__ENST00000343053.4_2_9:140149884-140150010:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2087097167969 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 67.837 1 64.729 64.229 65.229 -3.1086 0 0 0 0.23749 1 13162 13162 0.30703 0 1 + 37702 20730 25328 25344 37067 37067 -0.024761260455534284 RGNNLYPP 8 Unmodified _RGNNLYPP_ 0 0 0 ENST00000489291.5_1_9:90254323-90255245:+|nuORF ENST00000489291.5_1_9:90254323-90255245:+|nuORF ENST00000489291.5_1_9:90254323-90255245:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2551574707031 3 310.831248 929.471915 -0.44118 -0.00013713 0.84841 0.00026371 0.40723 0.00012658 310.83125539374834 24.659 0.335 24.659 24.511 24.846 0 13 9 2 0 0 0 1.0271 1 4288 4288 0.40072 0 1 372140 37703 10495 25329 25345 37068 37068 0.004357474404628192 RGNVRWAC 8 Unmodified _RGNVRWAC_ 0 0 0 REV__ENSG00000099821|ENST00000588649|POLRMT REV__ENSG00000099821|ENST00000588649|POLRMT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24237060546875 2 481.242878 960.471203 NaN NaN NaN NaN NaN NaN NaN 176.07 1 176.07 175.57 176.57 0 0 0 0 0.21486 1 36474 36474 0.79363 0 1 + 37704 14643 25330 25346 37069 37069 -0.010613704802381108 RGPAAGGAHL 10 Unmodified _RGPAAGGAHL_ 0 0 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.74951171875 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 129.79 1 125.16 124.66 125.66 -4.6292 0 0 0 0.22569 1 25577 25577 15.847 1.9411 1 37705 5541 25331 25347 37070 37070 0.02662569534618342 RGPHRSIRA 9 Unmodified _RGPHRSIRA_ 0 0 0 REV__ENST00000478046.5_1_19:46894427-46895907:+|nuORF REV__ENST00000478046.5_1_19:46894427-46895907:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 525.3292236328125 2 525.307398 1048.60024 NaN NaN NaN NaN NaN NaN NaN 138.15 1 138.15 137.65 138.65 0 0 0 0 0.19687 1 27419 27419 8.1555 1.1214 1 + 37706 22132 25332 25348 37071 37071 0.07788727474212465 RGPMTWVSL 9 Unmodified _RGPMTWVSL_ 0 0 0 ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENST00000507297.5_1_5:138855848-138858268:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6920776367188 2 523.776219 1045.53789 NaN NaN NaN NaN NaN NaN NaN 25.353 1 23.819 23.319 24.319 -1.5342 0 0 0 0.23508 1 4163 4163 10.074 0 1 37707 10696 25333 25349 37072 37072 0.016938202910068867 RGPPGPLGV 9 Unmodified _RGPPGPLGV_ 0 0 0 REV__ENSG00000081052|ENST00000396625|COL4A4 REV__ENSG00000081052|ENST00000396625|COL4A4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2510986328125 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 110.16 1 105.98 105.48 106.48 -4.1826 0 0 0 0.19657 1 21199 21199 4.897 1.6157 1 + 37708 14424 25334 25350 37073 37073 0.05653239308469438 RGPPRNYA 8 Unmodified _RGPPRNYA_ 0 0 0 nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;YBX3|p.E195G|1|0.52|ENSG00000060138|chr12:10710104-10710104|T/C|missense_variant nc|ENSG00000060138|P16989-3|YBX3 nc|ENSG00000060138|P16989-3|YBX3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.8785400390625 3 310.834992 929.483148 NaN NaN NaN NaN NaN NaN NaN 43.186 1 43.186 42.686 43.686 0 0 0 0 0.21486 1 8090 8090 1.4819 0 1 37709 1304 25335 25351 37074 37074 0.015585695345976092 RGPVKRPGL 9 Unmodified _RGPVKRPGL_ 0 0 0 REV__ENST00000523577.5_1_8:94712794-94713716:+|nuORF REV__ENST00000523577.5_1_8:94712794-94713716:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2679443359375 2 490.311618 978.608683 NaN NaN NaN NaN NaN NaN NaN 137.02 1 132.18 131.68 132.68 -4.84 0 0 0 0.1966 1 26394 26394 1.2148 1.092 1 + 37710 22667 25336 25352 37075 37075 0.11852281390849839 RGPVLAARQSP 11 Unmodified _RGPVLAARQSP_ 0 0 0 REV__ENST00000527295.5_1_11:407027-408122:-|nuORF REV__ENST00000527295.5_1_11:407027-408122:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.33349609375 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 45.466 1 45.466 44.966 45.966 0 0 0 0 0.22632 1 8547 8547 0.172 0.16862 1 + 37711 22703 25337 25353 37076 37076 0.08778730240055665 RGPVRSPPP 9 Unmodified _RGPVRSPPP_ 0 0 0 REV__ENST00000262577.5_1_8:144519846-144520068:-|nuORF REV__ENST00000262577.5_1_8:144519846-144520068:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7799072265625 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 42.986 1 40.38 39.88 40.88 -2.606 0 0 0 0.23508 1 7745 7745 13.042 2.2185 1 + 37712 20200 25338 25354 37077 37077 0.06343715602793054 RGQLEPPL 8 Unmodified _RGQLEPPL_ 0 0 0 ENST00000574857.1_1_17:2268210-2275697:+|nuORF;nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2 ENST00000574857.1_1_17:2268210-2275697:+|nuORF ENST00000574857.1_1_17:2268210-2275697:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 455.2621154785156 2 455.261259 908.507966 NaN NaN NaN NaN NaN NaN NaN 137.76 1 132.84 132.34 133.34 -4.9216 0 0 0 0.22692 1 26486 26486 0.68139 0 1 37713 4351 25339 25355 37078 37078 0.050052046173163944 RGQPPRLQLS 10 Unmodified _RGQPPRLQLS_ 0 0 0 REV__ENST00000486859.5_1_9:35649847-35650423:-|nuORF REV__ENST00000486859.5_1_9:35649847-35650423:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.336181640625 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 147.49 1 142.43 141.93 142.93 -5.0595 0 0 0 0.22588 1 28552 28552 7.609 0 1 + 37714 16375 25340 25356 37079 37079 0.08778730240078403 RGQQYNGP 8 Unmodified _RGQQYNGP_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.239501953125 2 460.222665 918.430778 NaN NaN NaN NaN NaN NaN NaN 19.244 1 17.848 17.348 18.348 -1.3966 0 0 0 0.21486 1 3164 3164 8.5933 0 1 + 37715 23644 25341 25357 37080 37080 -0.03170013599003596 RGQSKRRH 8 Unmodified _RGQSKRRH_ 0 0 0 REV__SNRK|p.G535D|1|0.08|ENSG00000163788|chr3:43347863-43347863|G/A|missense_variant REV__SNRK|p.G535D|1|0.08|ENSG00000163788|chr3:43347863-43347863|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.1225280761719 3 342.200557 1023.57984 NaN NaN NaN NaN NaN NaN NaN 38.755 1 38.755 38.255 39.255 0 0 0 0 0.21486 1 7189 7189 1.6526 0 1 + 37716 17612 25342 25358 37081 37081 0.06899556814414609 RGQYHCHD 8 Unmodified _RGQYHCHD_ 0 0 0 REV__ADAM33|p.A455Pfs*14|1|0.31|ENSG00000149451|chr20:3672575-3672575|C/-|frameshift_variant REV__ADAM33|p.A455Pfs*14|1|0.31|ENSG00000149451|chr20:3672575-3672575|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 508.10076904296875 2 508.211775 1014.409 NaN NaN NaN NaN NaN NaN NaN 179.31 1 174.4 173.9 174.9 -4.9114 0 0 0 0.21486 1 35778 35778 0 0 1 + 37717 12943 25343 25359 37082 37082 -0.09763141619237103 RGRALLSVE 9 Unmodified _RGRALLSVE_ 0 0 0 PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant;nc|ENSG00000040487|Q6ZP29-2|SLC66A1;nc|ENSG00000040487|Q6ZP29-3|SLC66A1;ENSG00000040487|ENST00000375153|SLC66A1 PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.2223205566406 3 334.201452 999.582528 NaN NaN NaN NaN NaN NaN NaN 91.174 1 87.249 86.749 87.749 -3.9251 0 0 0 0.23508 1 17844 17844 2.7352 1.0826 1 37718 12824 25344 25360 37083 37083 0.08271967428709104 RGRALLSVE 9 Unmodified _RGRALLSVE_ 0 0 0 PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant;nc|ENSG00000040487|Q6ZP29-2|SLC66A1;nc|ENSG00000040487|Q6ZP29-3|SLC66A1;ENSG00000040487|ENST00000375153|SLC66A1 PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant PQLC2|p.L194Cfs*31|1|0.13|ENSG00000040487|chr1:19326581-19326582|-/GT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.2223815917969 3 334.201452 999.582528 NaN NaN NaN NaN NaN NaN NaN 96.634 1 92.536 92.036 93.036 -4.0978 0 0 0 0.23508 1 18954 18954 2.7352 0 1 37719 12824 25344 25360 37084 37084 0.08271967428709104 RGRFDLDYT 9 Unmodified _RGRFDLDYT_ 0 0 0 REV__ENSG00000004534|ENST00000266022|RBM6 REV__ENSG00000004534|ENST00000266022|RBM6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 382.5284118652344 3 381.524484 1141.55162 0.065744 2.5083E-05 -0.15182 -5.7924E-05 -0.086077 -3.284E-05 381.52439305380557 56.001 1.2301 52.811 52.529 53.759 -3.1895 113 34 4 0 0 0 0.45972 1 10335 10335 8.1555 8.0823 1 53106000 + 37720 13837 25345 25361 37085 37085 -0.013492306761918371 RGRKRSPR 8 Unmodified _RGRKRSPR_ 0 0 0 REV__ENSG00000156853|ENST00000287461|ZNF689 REV__ENSG00000156853|ENST00000287461|ZNF689 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 338.2115783691406 3 338.212686 1011.61623 NaN NaN NaN NaN NaN NaN NaN 20.168 1 18.533 18.033 19.033 -1.6351 0 0 0 0.23664 1 3089 3089 3.2813 0 1 + 37721 17271 25346 25362 37086 37086 0.1108843371112016 RGRLMSKTWRC 11 Unmodified _RGRLMSKTWRC_ 0 0 0 REV__ENSG00000198874|ENST00000359626|TYW1 REV__ENSG00000198874|ENST00000359626|TYW1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24798583984375 3 465.248302 1392.72308 NaN NaN NaN NaN NaN NaN NaN 123.53 1 123.53 123.03 124.03 0 0 0 0 0.22632 1 24351 24351 0.172 0.15819 1 + 37722 19469 25347 25363 37087 37087 0.042424798189586 RGRPKKLA 8 Unmodified _RGRPKKLA_ 0 0 0 chr6:34243518-34243616|130|41.01|0.69|5.89|+|0|HMGA1,None|1 chr6:34243518-34243616|130|41.01|0.69|5.89|+|0|HMGA1,None|1 chr6:34243518-34243616|130|41.01|0.69|5.89|+|0|HMGA1,None|1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 309.2041015625 3 309.206649 924.598118 NaN NaN NaN NaN NaN NaN NaN 100.14 1 100.14 99.638 100.64 0 0 0 0 0.21486 1 19645 19645 0 0 1 37723 548 25348 25364 37088 37088 0.1328029873640162 RGRRWPQL 8 Unmodified _RGRRWPQL_ 0 0 0 REV__ENST00000594784.1_1_19:17534850-17535995:+|nuORF REV__ENST00000594784.1_1_19:17534850-17535995:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.0733947753906 3 356.877303 1067.61008 -0.25857 -9.2277E-05 -0.62743 -0.00022392 -0.886 -0.00031619 356.87690043292974 32.937 0.45063 30.721 30.56 31.01 -2.2158 21 12 2 0 0 0 1.0267 1 5734 5734 1.4819 0 1 813170 + 37724 23369 25349 25365 37089 37089 0.07897915479611584 RGRTSHCD 8 Unmodified _RGRTSHCD_ 0 0 0 nc|ENSG00000162065|Q9ULP9-2|TBC1D24;ENSG00000162065|ENST00000646147|TBC1D24 nc|ENSG00000162065|Q9ULP9-2|TBC1D24 nc|ENSG00000162065|Q9ULP9-2|TBC1D24 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.2014465332031 3 311.143609 930.408997 NaN NaN NaN NaN NaN NaN NaN 17.848 1 16.576 16.076 17.076 -1.2722 0 0 0 0.21486 1 2650 2650 1.6526 0 1 37725 5312 25350 25366 37090 37090 -0.05899141619238435 RGRVRVRLP 9 Unmodified _RGRVRVRLP_ 0 0 0 nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX nc|ENSG00000105227|Q9BXM0-3|PRX nc|ENSG00000105227|Q9BXM0-3|PRX MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 370.27978515625 3 370.243986 1107.71013 NaN NaN NaN NaN NaN NaN NaN 140.93 1 135.94 135.44 136.44 -4.9877 0 0 0 0.23508 1 27129 27129 0.26902 0 1 37726 2289 25351 25367 37091 37091 0.16058152813411652 RGRWAAGAA 9 Unmodified _RGRWAAGAA_ 0 0 0 ENST00000522204.1_1_8:134478185-134478299:-|nuORF ENST00000522204.1_1_8:134478185-134478299:-|nuORF ENST00000522204.1_1_8:134478185-134478299:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2239685058594 2 458.249018 914.483482 NaN NaN NaN NaN NaN NaN NaN 55.246 1 52.108 51.608 52.608 -3.1377 0 0 0 0.19638 1 10251 10251 2.8827 0 1 37727 10861 25352 25368 37092 37092 0.022819892544475806 RGRWRRRWGWR 11 Unmodified _RGRWRRRWGWR_ 0 0 0 ENST00000216410.7_1_14:53258232-53258316:-|nuORF ENST00000216410.7_1_14:53258232-53258316:-|nuORF ENST00000216410.7_1_14:53258232-53258316:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7880249023438 3 543.306642 1626.8981 0.32488 0.00017651 3.2294 0.0017545 3.5542 0.001931 543.6432982658081 116.63 0.10685 116.63 116.57 116.68 0 4 2 2 0 0 0 0.89122 1 22975 22975 0.50596 0.41111 1 1504000 37728 8111 25353 25369 37093 37093 0.10972403790515273 RGSAWHAQ 8 Unmodified _RGSAWHAQ_ 0 0 0 REV__nc|ENSG00000088280|Q8TDY4-2|ASAP3 REV__nc|ENSG00000088280|Q8TDY4-2|ASAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2292175292969 2 456.725375 911.436198 0.063991 2.9226E-05 0.33589 0.00015341 0.39989 0.00018264 456.72546613336084 147.24 1.0219 142.13 141.68 142.7 -5.1108 78 28 4 0 0 0 8448 2 28470 28470;28491 1.7423 1.7423 1 25040000 + 37729 14510 25354 25370 37094;37095 37094 -0.02306290016542789 RGSELDTIA 9 Unmodified _RGSELDTIA_ 0 0 0 REV__nc|ENSG00000160299|O95613-2|PCNT REV__nc|ENSG00000160299|O95613-2|PCNT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2474060058594 2 481.251089 960.487624 0.08258 3.9742E-05 -0.81517 -0.0003923 -0.73259 -0.00035256 481.2505084892255 37.909 2.4506 37.909 36.887 39.338 0 134 69 4 0 0 0 0.30056 1 7198 7198 1.2148 0 1 99259000 + 37730 17414 25355 25371 37096 37096 0.005799891668402779 RGSERVLP 8 Unmodified _RGSERVLP_ 0 0 0 RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant;RASSF9|p.E309Vfs*9|1|0.05|ENSG00000198774|chr12:85805084-85805085|-/AAATA|frameshift_variant;ENSG00000198774|ENST00000361228|RASSF9;RASSF9|p.D105Rfs*2|1|0.4|ENSG00000198774|chr12:85805698-85805699|-/C|frameshift_variant;RASSF9|p.K139Nfs*11|1|0.07|ENSG00000198774|chr12:85805593-85805593|T/-|frameshift_variant RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2406921386719 2 457.264333 912.514114 0.12173 5.5661E-05 -0.28296 -0.00012939 -0.16123 -7.3725E-05 457.2641868534764 158.46 0.81171 153.18 152.8 153.61 -5.2748 34 22 2 0 0 0 0.73936 1 30784 30784 8.5933 0 1 1835400 37731 7490 25356 25372 37097 37097 0.054357228488470355 RGSERVLP 8 Unmodified _RGSERVLP_ 0 0 0 RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant;RASSF9|p.E309Vfs*9|1|0.05|ENSG00000198774|chr12:85805084-85805085|-/AAATA|frameshift_variant;ENSG00000198774|ENST00000361228|RASSF9;RASSF9|p.D105Rfs*2|1|0.4|ENSG00000198774|chr12:85805698-85805699|-/C|frameshift_variant;RASSF9|p.K139Nfs*11|1|0.07|ENSG00000198774|chr12:85805593-85805593|T/-|frameshift_variant RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.264333 912.514114 0.060864 2.7831E-05 0.13633 6.2338E-05 0.19719 9.0169E-05 457.2642882596267 157.77 0.67892 152.98 152.7 153.37 -4.7885 -0.024014 0.00020501 NaN 8.5933 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2468300 37732 7490 25356 25372 0.054357228488470355 RGSERVLP 8 Unmodified _RGSERVLP_ 0 0 0 RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant;RASSF9|p.E309Vfs*9|1|0.05|ENSG00000198774|chr12:85805084-85805085|-/AAATA|frameshift_variant;ENSG00000198774|ENST00000361228|RASSF9;RASSF9|p.D105Rfs*2|1|0.4|ENSG00000198774|chr12:85805698-85805699|-/C|frameshift_variant;RASSF9|p.K139Nfs*11|1|0.07|ENSG00000198774|chr12:85805593-85805593|T/-|frameshift_variant RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 457.264333 912.514114 0.4156 0.00019004 -0.044533 -2.0363E-05 0.37106 0.00016967 457.2642140038251 158.38 0.85896 153.11 152.69 153.55 -5.2711 0.11003 3.9603E-05 NaN 8.5933 42 23 3 NaN NaN NaN NaN 0 NaN NaN 0 2122900 37733 7490 25356 25372 0.054357228488470355 RGSFQLWQIKM 11 Unmodified _RGSFQLWQIKM_ 0 0 0 ENST00000374710.7_1_9:108210409-108226598:+|nuORF ENST00000374710.7_1_9:108210409-108226598:+|nuORF ENST00000374710.7_1_9:108210409-108226598:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25140380859375 3 465.251818 1392.73363 NaN NaN NaN NaN NaN NaN NaN 80.316 1 76.806 76.306 77.306 -3.5102 0 0 0 0.22632 1 15687 15687 3.0723 0 1 37734 9224 25357 25373 37098 37098 0.052967857450312295 RGSFQLWQIKM 11 Unmodified _RGSFQLWQIKM_ 0 0 0 ENST00000374710.7_1_9:108210409-108226598:+|nuORF ENST00000374710.7_1_9:108210409-108226598:+|nuORF ENST00000374710.7_1_9:108210409-108226598:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.252197265625 3 465.251818 1392.73363 NaN NaN NaN NaN NaN NaN NaN 80.605 1 76.766 76.266 77.266 -3.8392 0 0 0 0.22632 1 15300 15300 3.0723 3.0461 1 37735 9224 25357 25373 37099 37099 0.052967857450312295 RGSGGVLELAV 11 Unmodified _RGSGGVLELAV_ 0 0 0 REV__ENST00000554546.5_1_14:73876766-73925251:-|nuORF REV__ENST00000554546.5_1_14:73876766-73925251:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 529.3016967773438 2 529.303655 1056.59276 NaN NaN NaN NaN NaN NaN NaN 13.111 1 11.991 11.491 12.491 -1.1206 0 0 0 0.22632 1 1626 1626 1.4551 0.12559 1 + 37736 22975 25358 25374 37100 37100 0.0667253036326656 RGSPHTSGSVP 11 Unmodified _RGSPHTSGSVP_ 0 0 0 REV__ENST00000358994.8_1_9:131910952-131911039:+|nuORF REV__ENST00000358994.8_1_9:131910952-131911039:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.281982421875 2 541.272887 1080.53122 NaN NaN NaN NaN NaN NaN NaN 16.825 1 15.609 15.109 16.109 -1.2159 0 0 0 0.21872 1 2667 2667 14.405 2.1647 1 + 37737 20845 25359 25375 37101 37101 -0.005824013360097524 RGSQYRVES 9 Unmodified _RGSQYRVES_ 0 0 0 nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant nc|ENSG00000009413|O60673-2|REV3L nc|ENSG00000009413|O60673-2|REV3L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.282470703125 2 541.272887 1080.53122 NaN NaN NaN NaN NaN NaN NaN 17.072 1 15.557 15.057 16.057 -1.5148 0 0 0 0.23508 1 2455 2455 10.074 1.3285 1 37738 1051 25360 25376 37102 37102 -0.005824013360097524 RGSVHPDKW 9 Unmodified _RGSVHPDKW_ 0 0 0 BICC1|p.I566Nfs*44|1|0.3|ENSG00000122870|chr10:58799216-58799217|-/A|frameshift_variant BICC1|p.I566Nfs*44|1|0.3|ENSG00000122870|chr10:58799216-58799217|-/A|frameshift_variant BICC1|p.I566Nfs*44|1|0.3|ENSG00000122870|chr10:58799216-58799217|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2786254882812 2 541.280515 1080.54648 NaN NaN NaN NaN NaN NaN NaN 16.719 1 15.447 14.947 15.947 -1.2722 0 0 0 0.23508 1 2420 2420 10.074 0 1 37739 318 25361 25377 37103 37103 0.009425102518434869 RGTCLAFPP 9 Unmodified _RGTCLAFPP_ 0 0 0 nc|ENSG00000135749|A6NKB5-3|PCNX2 nc|ENSG00000135749|A6NKB5-3|PCNX2 nc|ENSG00000135749|A6NKB5-3|PCNX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2480773925781 2 481.249837 960.485122 0.021637 1.0413E-05 1.4834 0.00071387 1.505 0.00072429 481.2503997935835 40.302 3.026 37.762 36.657 39.683 -2.5398 141 85 2 0 0 0 0.17664 1 7097 7097 2.8827 1.1908 1 101380000 37740 12342 25362 25378 37104 37104 0.0032986222820454714 RGTSAEPGPTA 11 Unmodified _RGTSAEPGPTA_ 0 0 0 nc|ENSG00000167302|Q96N21-2|TEPSIN;nc|ENSG00000167302|Q96N21|TEPSIN;ENSG00000167302|ENST00000637944|TEPSIN nc|ENSG00000167302|Q96N21-2|TEPSIN nc|ENSG00000167302|Q96N21-2|TEPSIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.259033203125 2 522.259445 1042.50434 0.57062 0.00029801 -0.82755 -0.0004322 -0.25693 -0.00013418 522.2589819944774 29.76 0.69345 27.686 27.381 28.074 -2.0743 50 19 4 0 0 0 0.38781 1 5029 5029 45.74 7.7659 1 5690100 37741 5799 25363 25379 37105 37105 -0.015215099471788562 RGVVERSSR 9 Unmodified _RGVVERSSR_ 0 0 0 ENST00000602837.1_1_2:181927748-181940959:+|nuORF ENST00000602837.1_1_2:181927748-181940959:+|nuORF ENST00000602837.1_1_2:181927748-181940959:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.2314147949219 3 349.200223 1044.57884 NaN NaN NaN NaN NaN NaN NaN 88.019 1 84.023 83.523 84.523 -3.9953 0 0 0 0.23508 1 16764 16764 2.2828 0 1 37742 11718 25364 25380 37106 37106 0.05833297654839953 RGYRDTPP 8 Unmodified _RGYRDTPP_ 0 0 0 REV__nc|ENSG00000033122|Q96NW7-2|LRRC7 REV__nc|ENSG00000033122|Q96NW7-2|LRRC7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2485046386719 2 481.246141 960.477728 NaN NaN NaN NaN NaN NaN NaN 15.792 1 14.439 13.939 14.939 -1.3534 0 0 0 0.21486 1 2201 2201 4.756 0 1 + 37743 14020 25365 25381 37107 37107 -0.0040915404786119325 RGYRRPYNY 9 Unmodified _RGYRRPYNY_ 0 0 0 nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000540447.5_1_12:10853889-10854789:-|nuORF;ENST00000536823.5_1_12:10853889-10856822:-|nuORF;ENST00000542002.5_1_12:10853889-10868397:-|nuORF;nc|ENSG00000060138|P16989-2|YBX3 nc|ENSG00000060138|P16989-3|YBX3 nc|ENSG00000060138|P16989-3|YBX3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7754516601562 2 622.817796 1243.62104 NaN NaN NaN NaN NaN NaN NaN 48.889 1 48.889 48.389 49.389 0 0 0 0 0.23508 1 9234 9234 4.3292 0.38484 1 37744 1304 25366 25382 37108 37108 0.008972730632422099 RHAKRRRRVHP 11 Unmodified _RHAKRRRRVHP_ 0 0 0 REV__ENST00000311481.10_1_11:66044423-66044729:+|nuORF REV__ENST00000311481.10_1_11:66044423-66044729:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2572326660156 3 490.303009 1467.8872 NaN NaN NaN NaN NaN NaN NaN 160.22 1 155.43 154.93 155.93 -4.7952 0 0 0 0.22632 1 31862 31862 0.50596 0.47975 1 + 37745 20492 25367 25383 37109 37109 0.17197001416252533 RHCLCPCMKA 10 Unmodified _RHCLCPCMKA_ 0 0 0 REV__ENSG00000260456|ENST00000567970|C16orf95 REV__ENSG00000260456|ENST00000567970|C16orf95 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.8493957519531 3 387.84312 1160.50753 NaN NaN NaN NaN NaN NaN NaN 10.056 1 9.262 8.762 9.762 -0.79424 0 0 0 0.22588 1 1221 1221 0 0 1 + 37746 19881 25368 25384 37110 37110 -0.06630320961698999 RHCTGVLGGG 10 Unmodified _RHCTGVLGGG_ 0 0 0 ENST00000421890.5_1_7:5862812-5870841:+|nuORF ENST00000421890.5_1_7:5862812-5870841:+|nuORF ENST00000421890.5_1_7:5862812-5870841:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7301940917969 2 478.740168 955.465783 NaN NaN NaN NaN NaN NaN NaN 8.7631 1 7.9689 7.4689 8.4689 -0.79424 0 0 0 0.22588 1 946 946 0 0 1 37747 9675 25369 25385 37111 37111 -0.013730940626714982 RHCWLTEH 8 Unmodified _RHCWLTEH_ 0 0 0 REV__ENSG00000188647|ENST00000340434|PTAR1 REV__ENSG00000188647|ENST00000340434|PTAR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2767333984375 2 541.253443 1080.49233 NaN NaN NaN NaN NaN NaN NaN 135.74 1 130.91 130.41 131.41 -4.8307 0 0 0 0.21015 1 26136 26136 0.68139 0 1 + 37748 19162 25370 25386 37112 37112 -0.04469405171380458 RHEEFRLG 8 Unmodified _RHEEFRLG_ 0 0 0 REV__nc|ENSG00000143365|P51449-2|RORC REV__nc|ENSG00000143365|P51449-2|RORC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2710571289062 2 522.27269 1042.53083 NaN NaN NaN NaN NaN NaN NaN 123.91 1 119.31 118.81 119.81 -4.5926 0 0 0 0.23107 1 23847 23847 1.7423 0 1 + 37749 16718 25371 25387 37113 37113 0.01126223734809173 RHEWFAMSERR 11 Unmodified _RHEWFAMSERR_ 0 0 0 REV__ENST00000438651.5_1_5:55809680-55828929:-|nuORF REV__ENST00000438651.5_1_5:55809680-55828929:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 502.2431945800781 3 502.245726 1503.71535 NaN NaN NaN NaN NaN NaN NaN 56.274 1 53.084 52.584 53.584 -3.1895 0 0 0 0.22632 1 10426 10426 5.4027 0 1 + 37750 21687 25372 25388 37114 37114 -0.016359561769832 RHFGDMTA 8 Unmodified _RHFGDMTA_ 0 0 0 REV__ENSG00000164961|ENST00000318410|WASHC5 REV__ENSG00000164961|ENST00000318410|WASHC5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 312.146484375 3 312.144838 933.412685 NaN NaN NaN NaN NaN NaN NaN 83.072 1 79.198 78.698 79.698 -3.8736 0 0 0 0.21486 1 15776 15776 1.4819 0 1 + 37751 17730 25373 25389 37115 37115 -0.05668471845353906 RHHDAGRD 8 Unmodified _RHHDAGRD_ 0 0 0 ENST00000296564.8_2_5:5422997-5436538:+|nuORF ENST00000296564.8_2_5:5422997-5436538:+|nuORF ENST00000296564.8_2_5:5422997-5436538:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78399658203125 2 482.228813 962.443074 -0.071796 -3.4622E-05 0.91173 0.00043966 0.83993 0.00040504 482.2291405872723 42.192 0.39067 39.586 39.36 39.75 -2.606 13 10 2 0 0 0 0.69702 1 7553 7553 26.884 8.8764 1 1536400 37752 8511 25374 25390 37116 37116 -0.0396497713595636 RHHDAGRD 8 Unmodified _RHHDAGRD_ 0 0 0 ENST00000296564.8_2_5:5422997-5436538:+|nuORF ENST00000296564.8_2_5:5422997-5436538:+|nuORF ENST00000296564.8_2_5:5422997-5436538:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 482.228813 962.443074 -0.093512 -4.5094E-05 3.0609 0.0014761 2.9674 0.001431 482.23018817436457 42.36 0.31791 39.641 39.45 39.768 -2.7191 0.028889 0.00065671 NaN 26.884 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2869300 37753 8511 25374 25390 -0.0396497713595636 RHHDAGRD 8 Unmodified _RHHDAGRD_ 0 0 0 ENST00000296564.8_2_5:5422997-5436538:+|nuORF ENST00000296564.8_2_5:5422997-5436538:+|nuORF ENST00000296564.8_2_5:5422997-5436538:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 482.228813 962.443074 -0.018682 -9.0091E-06 2.0432 0.00098527 2.0245 0.00097626 482.22977898242 42.261 0.2831 39.61 39.39 39.674 -2.651 -0.0020854 -0.00032491 NaN 26.884 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1447100 37754 8511 25374 25390 -0.0396497713595636 RHHGAQHINLE 11 Unmodified _RHHGAQHINLE_ 0 0 0 ACE|p.Y864H|1|0.22|ENSG00000159640|chr17:63489081-63489081|T/C|missense_variant ACE|p.Y864H|1|0.22|ENSG00000159640|chr17:63489081-63489081|T/C|missense_variant ACE|p.Y864H|1|0.22|ENSG00000159640|chr17:63489081-63489081|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.9051208496094 3 437.893681 1310.65921 NaN NaN NaN NaN NaN NaN NaN 10.155 1 9.3608 8.8608 9.8608 -0.79424 0 0 0 0.23698 1 1244 1244 0 0 1 37755 32 25375 25391 37117 37117 0.01631158977920677 RHHGCCCGCFE 11 Unmodified _RHHGCCCGCFE_ 0 0 0 ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-2|FAM221B ENSG00000204930|ENST00000423537|FAM221B ENSG00000204930|ENST00000423537|FAM221B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 626.216064453125 2 626.217362 1250.42017 NaN NaN NaN NaN NaN NaN NaN 7.8526 1 6.8378 6.3378 7.3378 -1.0148 0 0 0 0.23698 1 686 686 0 0 1 37756 7621 25376 25392 37118 37118 -0.19502146903278117 RHHHHHHHHYY 11 Unmodified _RHHHHHHHHYY_ 0 0 0 REV__ERC2|p.H924Y|1|0.24|ENSG00000187672|chr3:55699455-55699455|G/A|missense_variant REV__ERC2|p.H924Y|1|0.24|ENSG00000187672|chr3:55699455-55699455|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2731323242188 3 533.243819 1596.70963 NaN NaN NaN NaN NaN NaN NaN 157.92 1 152.64 152.14 153.14 -5.2712 0 0 0 0.22632 1 30633 30633 0.026206 0.026206 1 + 37757 23500 25377 25393 37119 37119 -0.06485873853716839 RHHHHHHHHYY 11 Unmodified _RHHHHHHHHYY_ 0 0 0 REV__ERC2|p.H924Y|1|0.24|ENSG00000187672|chr3:55699455-55699455|G/A|missense_variant REV__ERC2|p.H924Y|1|0.24|ENSG00000187672|chr3:55699455-55699455|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2835083007812 3 533.243819 1596.70963 0.46277 0.00024677 0.41158 0.00021947 0.87436 0.00046625 533.5792877884548 156.47 0.42676 151.2 150.84 151.26 -5.2712 12 11 2 0 0 0 0.96218 1 30296 30296 1.2148 0.70888 1 2488700 + 37758 23500 25377 25393 37120 37120 -0.06485873853716839 RHHLHLHH 8 Unmodified _RHHLHLHH_ 0 0 0 REV__RAB8B|p.V19Gfs*26|1|0.25|ENSG00000166128|chr15:63189674-63189675|-/G|frameshift_variant REV__RAB8B|p.V19Gfs*26|1|0.25|ENSG00000166128|chr15:63189674-63189675|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7960205078125 2 543.794458 1085.57436 NaN NaN NaN NaN NaN NaN NaN 178.65 1 173.86 173.36 174.36 -4.7898 0 0 0 0.21486 1 36551 36551 0.79363 0 1 + 37759 24541 25378 25394 37121 37121 0.03499878022603298 RHHRHHHHHHH 11 Unmodified _RHHRHHHHHHH_ 0 0 0 BEAN1|p.P122Hfs*50|1|0.38|ENSG00000166546|chr16:66477631-66477631|C/-|frameshift_variant;ENSG00000166546|ENST00000536005|BEAN1 BEAN1|p.P122Hfs*50|1|0.38|ENSG00000166546|chr16:66477631-66477631|C/-|frameshift_variant BEAN1|p.P122Hfs*50|1|0.38|ENSG00000166546|chr16:66477631-66477631|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2665405273438 3 522.254941 1563.74299 NaN NaN NaN NaN NaN NaN NaN 128.11 1 128.11 127.61 128.61 0 0 0 0 0.22632 1 25298 25298 1.4551 1.4289 1 37760 313 25379 25395 37122 37122 -0.016328272911550812 RHHRYRLHHEE 11 Unmodified _RHHRYRLHHEE_ 0 0 0 ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3966674804688 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 116.79 1 116.79 116.29 117.29 0 0 0 0 0.23324 1 23000 23000 5.7319 0.43497 1 37761 8528 25380 25396 37123 37123 0.0204841542918075 RHHRYRLHHEE 11 Unmodified _RHHRYRLHHEE_ 0 0 0 ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.39697265625 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 119.1 1 119.1 118.6 119.6 0 0 0 0 0.23324 1 23463 23463 5.7319 0.43497 1 37762 8528 25380 25396 37124 37124 0.0204841542918075 RHHRYRLHHEE 11 Unmodified _RHHRYRLHHEE_ 0 0 0 ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3999633789062 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 146 1 146 145.5 146.5 0 0 0 0 0.22632 1 29190 29190 0.026206 0 1 37763 8528 25380 25396 37125 37125 0.0204841542918075 RHHRYRLHHEE 11 Unmodified _RHHRYRLHHEE_ 0 0 0 ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.400390625 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 119.43 1 114.91 114.41 115.41 -4.5221 0 0 0 0.23324 1 23550 23550 5.7319 2.7366 1 37764 8528 25380 25396 37126 37126 0.0204841542918075 RHHRYRLHHEE 11 Unmodified _RHHRYRLHHEE_ 0 0 0 ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3948364257812 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 122.3 1 117.75 117.25 118.25 -4.5476 0 0 0 0.23324 1 24109 24109 5.7319 2.7366 1 37765 8528 25380 25396 37127 37127 0.0204841542918075 RHHRYRLHHEE 11 Unmodified _RHHRYRLHHEE_ 0 0 0 ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3886108398438 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 119.41 1 114.77 114.27 115.27 -4.645 0 0 0 0.2367 1 22917 22917 2.9952 0 1 37766 8528 25380 25396 37128 37128 0.0204841542918075 RHHRYRLHHEE 11 Unmodified _RHHRYRLHHEE_ 0 0 0 ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF ENST00000298573.8_1_12:12633165-12633258:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3955688476562 2 785.398338 1568.78212 NaN NaN NaN NaN NaN NaN NaN 122.74 1 118.01 117.51 118.51 -4.731 0 0 0 0.2367 1 23575 23575 2.9952 0.26005 1 37767 8528 25380 25396 37129 37129 0.0204841542918075 RHIQLASRFEW 11 Unmodified _RHIQLASRFEW_ 0 0 0 REV__ENST00000341259.6_1_12:111887440-111887905:+|nuORF REV__ENST00000341259.6_1_12:111887440-111887905:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2435302734375 3 481.593232 1441.75787 NaN NaN NaN NaN NaN NaN NaN 161.85 1 161.85 161.35 162.35 0 0 0 0 0.22632 1 32512 32512 0.03141 0 1 + 37768 20713 25381 25397 37130 37130 0.05465762222934245 RHIQQFMRRYW 11 Unmodified _RHIQQFMRRYW_ 0 0 0 REV__ENST00000523402.5_1_8:22411983-22419017:+|nuORF REV__ENST00000523402.5_1_8:22411983-22419017:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3772583007812 2 810.920061 1619.82557 NaN NaN NaN NaN NaN NaN NaN 94.857 1 90.976 90.476 91.476 -3.881 0 0 0 0.22632 1 18201 18201 0.026206 0.026206 1 + 37769 15637 25382 25398 37131 37131 0.040448888820947104 RHKRLLTY 8 Unmodified _RHKRLLTY_ 0 0 0 REV__SLC4A4|p.F457Lfs*9|1|0.4|ENSG00000080493|chr4:71453538-71453538|T/-|frameshift_variant REV__SLC4A4|p.F457Lfs*9|1|0.4|ENSG00000080493|chr4:71453538-71453538|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7733764648438 2 543.830175 1085.6458 0.3672 0.0001997 -1.3845 -0.00075295 -1.0173 -0.00055325 543.8293668498056 110.79 0.97939 110.79 110.29 111.27 0 75 27 4 0 0 0 0.76728 1 21693 21693 5.7604 1.0044 1 20147000 + 37770 14408 25383 25399 37132 37132 0.10639952936617192 RHKRRRRKQK 10 Unmodified _RHKRRRRKQK_ 0 0 0 ENST00000478247.1_1_3:183882805-183888540:+|nuORF;DVL3|p.M666Cfs*2|1|0.47|ENSG00000161202|chr3:184170593-184170593|C/-|frameshift_variant;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3 ENST00000478247.1_1_3:183882805-183888540:+|nuORF ENST00000478247.1_1_3:183882805-183888540:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 362.47314453125 4 362.986901 1447.9185 0.21957 7.97E-05 -0.41247 -0.00014972 -0.19291 -7.0023E-05 362.9866631812731 99.211 1.8975 94.942 93.776 95.674 -4.2692 166 54 4 0 0 0 1.1344 1 18742 18742 0.13989 0 1 14894000 37771 898 25384 25400 37133 37133 0.21245574450313143 RHKRRRRKQK 10 Unmodified _RHKRRRRKQK_ 0 0 0 ENST00000478247.1_1_3:183882805-183888540:+|nuORF;DVL3|p.M666Cfs*2|1|0.47|ENSG00000161202|chr3:184170593-184170593|C/-|frameshift_variant;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3 ENST00000478247.1_1_3:183882805-183888540:+|nuORF ENST00000478247.1_1_3:183882805-183888540:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 362.986901 1447.9185 -0.22395 -8.129E-05 0.06642 2.411E-05 -0.15753 -5.718E-05 362.98684193726996 98.927 1.5255 94.795 93.707 95.233 -4.1326 -0.054649 7.8001E-05 NaN 0.13989 155 43 5 NaN NaN NaN NaN 0 NaN NaN 0 14814000 37772 898 25384 25400 0.21245574450313143 RHKRRRRKQK 10 Unmodified _RHKRRRRKQK_ 0 0 0 ENST00000478247.1_1_3:183882805-183888540:+|nuORF;DVL3|p.M666Cfs*2|1|0.47|ENSG00000161202|chr3:184170593-184170593|C/-|frameshift_variant;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3 ENST00000478247.1_1_3:183882805-183888540:+|nuORF ENST00000478247.1_1_3:183882805-183888540:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 362.986901 1447.9185 -0.55169 -0.00020026 0.34601 0.0001256 -0.20568 -7.466E-05 362.98694330518566 98.767 1.9143 94.811 93.641 95.555 -3.9564 -0.038334 0.00048394 NaN 0.13989 133 55 4 NaN NaN NaN NaN 0 NaN NaN 0 7340000 37773 898 25384 25400 0.21245574450313143 RHLAPPFP 8 Unmodified _RHLAPPFP_ 0 0 0 REV__MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant REV__MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.2007141113281 3 312.1801 933.518471 NaN NaN NaN NaN NaN NaN NaN 81.105 1 81.105 80.605 81.605 0 0 0 0 0.21486 1 15793 15793 0.40072 0 1 + 37774 19087 25385 25401 37134 37134 0.04905232062412779 RHLAPPFP 8 Unmodified _RHLAPPFP_ 0 0 0 REV__MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant REV__MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.1535339355469 3 312.1801 933.518471 NaN NaN NaN NaN NaN NaN NaN 107.28 1 107.28 106.78 107.78 0 0 0 0 0.21486 1 21093 21093 0.40072 0 1 + 37775 19087 25385 25401 37135 37135 0.04905232062412779 RHLAPPFP 8 Unmodified _RHLAPPFP_ 0 0 0 REV__MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant REV__MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.1648254394531 3 312.1801 933.518471 NaN NaN NaN NaN NaN NaN NaN 83.212 1 79.604 79.104 80.104 -3.6079 0 0 0 0.21486 1 16266 16266 1.6526 0 1 + 37776 19087 25385 25401 37136 37136 0.04905232062412779 RHLAPPFP 8 Unmodified _RHLAPPFP_ 0 0 0 REV__MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant REV__MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.17999267578125 3 312.1801 933.518471 NaN NaN NaN NaN NaN NaN NaN 104.01 1 99.794 99.294 100.29 -4.2183 0 0 0 0.21486 1 20454 20454 1.6526 0 1 + 37777 19087 25385 25401 37137 37137 0.04905232062412779 RHLIWNDHLHK 11 Unmodified _RHLIWNDHLHK_ 0 0 0 REV__ENST00000598846.1_1_1:1635046-1639660:-|nuORF REV__ENST00000598846.1_1_1:1635046-1639660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2660827636719 3 490.26886 1467.78475 NaN NaN NaN NaN NaN NaN NaN 57.758 1 54.507 54.007 55.007 -3.2517 0 0 0 0.22632 1 10727 10727 1.4551 0.8698 1 + 37778 13897 25386 25402 37138 37138 0.069568708341194 RHLNVPRPY 9 Unmodified _RHLNVPRPY_ 0 0 0 ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant;nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644 ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.332763671875 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 125.06 1 120.46 119.96 120.96 -4.5984 0 0 0 0.19684 1 24660 24660 1.2148 1.087 1 37779 3223 25387 25403 37139 37139 0.06666764931219404 RHLPFDDVWQR 11 Unmodified _RHLPFDDVWQR_ 0 0 0 REV__nc|ENSG00000001631|O00522-2|KRIT1 REV__nc|ENSG00000001631|O00522-2|KRIT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26727294921875 3 490.252987 1467.73713 NaN NaN NaN NaN NaN NaN NaN 27.549 1 25.793 25.293 26.293 -1.7552 0 0 0 0.22632 1 4615 4615 0.00056442 0 1 + 37780 13821 25388 25404 37140 37140 0.02197171843272372 RHLPFDDVWQR 11 Unmodified _RHLPFDDVWQR_ 0 0 0 REV__nc|ENSG00000001631|O00522-2|KRIT1 REV__nc|ENSG00000001631|O00522-2|KRIT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2660217285156 3 490.252987 1467.73713 NaN NaN NaN NaN NaN NaN NaN 26.934 1 25.012 24.512 25.512 -1.9222 0 0 0 0.22632 1 4479 4479 0.00056442 0 1 + 37781 13821 25388 25404 37141 37141 0.02197171843272372 RHLYFFNIRFR 11 Unmodified _RHLYFFNIRFR_ 0 0 0 REV__ROS1|p.Y363Lfs*25|1|0.38|ENSG00000047936|chr6:117394238-117394239|-/A|frameshift_variant REV__ROS1|p.Y363Lfs*25|1|0.38|ENSG00000047936|chr6:117394238-117394239|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6885375976562 3 523.624755 1567.85244 NaN NaN NaN NaN NaN NaN NaN 157.97 1 152.7 152.2 153.2 -5.2712 0 0 0 0.23698 1 30645 30645 1.2148 0.76031 1 + 37782 24576 25389 25405 37142 37142 0.09122320764913638 RHMIVLLHLI 10 Unmodified _RHMIVLLHLI_ 0 0 0 REV__ENST00000418058.1_1_1:65280440-65280524:+|nuORF REV__ENST00000418058.1_1_1:65280440-65280524:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7683715820312 2 622.886635 1243.75872 NaN NaN NaN NaN NaN NaN NaN 173.42 1 168.54 168.04 169.04 -4.881 0 0 0 2.8426 1 34477 34477 0.043787 0.043223 1 + 37783 20364 25390 25406 37143 37143 0.14658885338303662 RHNEFDFI 8 Unmodified _RHNEFDFI_ 0 0 0 nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2 nc|ENSG00000198682|O95340|PAPSS2 nc|ENSG00000198682|O95340|PAPSS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2021179199219 3 359.841924 1076.50394 -0.2176 -7.8302E-05 0.40709 0.00014649 0.18949 6.8187E-05 359.84206487424535 63.763 0.98257 60.766 60.488 61.471 -2.9975 34 27 2 0 0 0 0.9383 1 12435 12435 25.399 20.102 1 2751100 37784 7471 25391 25407 37144 37144 -0.031248848763880233 RHNTKHTGK 9 Unmodified _RHNTKHTGK_ 0 0 0 nc|ENSG00000196268|Q6ZR52|ZNF493;ZNF493|p.K499Nfs*51|1|0.16|ENSG00000196268|chr19:21424536-21424536|A/-|frameshift_variant;ENSG00000196268|ENST00000392288|ZNF493 nc|ENSG00000196268|Q6ZR52|ZNF493 nc|ENSG00000196268|Q6ZR52|ZNF493 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2010192871094 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 61.736 1 61.736 61.236 62.236 0 0 0 0 0.22823 1 11839 11839 15.248 3.0078 1 37785 7252 25392 25408 37145 37145 0.043487173747280394 RHPPPALF 8 Unmodified _RHPPPALF_ 0 0 0 REV__ENST00000482899.1_1_7:150737010-150738273:+|nuORF REV__ENST00000482899.1_1_7:150737010-150738273:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.14605712890625 3 312.1801 933.518471 NaN NaN NaN NaN NaN NaN NaN 82.278 1 78.579 78.079 79.079 -3.6985 0 0 0 0.21486 1 15690 15690 1.6526 0.45928 1 + 37786 22197 25393 25409 37146 37146 0.0490523206240141 RHPRTRWKNWW 11 Unmodified _RHPRTRWKNWW_ 0 0 0 ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2 ENST00000467923.5_1_20:5107766-5163790:+|nuORF ENST00000467923.5_1_20:5107766-5163790:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3895874023438 2 811.931817 1621.84908 0.64755 0.00052576 3.6467 0.0029609 4.2943 0.0034867 812.4340402513402 163.19 0.17674 158 157.84 158.02 -5.1878 5 4 2 0 0 0 0.96219 1 31748 31748 2.7352 2.4282 1 16558000 37787 10158 25394 25410 37147 37147 0.06303070710941938 RHPVGLLL 8 Unmodified _RHPVGLLL_ 0 0 0 REV__ENST00000512335.5_1_5:1630638-1632802:-|nuORF REV__ENST00000512335.5_1_5:1630638-1632802:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.160400390625 3 302.19575 903.565421 NaN NaN NaN NaN NaN NaN NaN 68.72 1 68.72 68.22 69.22 0 0 0 0 0.21486 1 13292 13292 0.45834 0 1 + 37788 22506 25395 25411 37148 37148 0.10978091613583274 RHPVGLLL 8 Unmodified _RHPVGLLL_ 0 0 0 REV__ENST00000512335.5_1_5:1630638-1632802:-|nuORF REV__ENST00000512335.5_1_5:1630638-1632802:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.15985107421875 3 302.19575 903.565421 NaN NaN NaN NaN NaN NaN NaN 74.242 1 70.648 70.148 71.148 -3.594 0 0 0 0.21486 1 14100 14100 0 0 1 + 37789 22506 25395 25411 37149 37149 0.10978091613583274 RHQRHRRRYQF 11 Unmodified _RHQRHRRRYQF_ 0 0 0 REV__ANKIB1|p.R775H|1|0.29|ENSG00000001629|chr7:92396405-92396405|G/A|missense_variant REV__ANKIB1|p.R775H|1|0.29|ENSG00000001629|chr7:92396405-92396405|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.781982421875 3 547.301557 1638.88284 0.28578 0.00015641 4.2763 0.0023404 4.5621 0.0024968 547.6385360528002 134.27 0.13686 129.45 129.34 129.48 -4.8175 6 3 2 0 0 0 0.96227 1 25841 25841 0.094841 0.094841 1 575770 + 37790 13050 25396 25412 37150 37150 0.0889549220266872 RHRDKGSAL 9 Unmodified _RHRDKGSAL_ 0 0 0 ENST00000411828.5_1_21:40547518-40555177:-|nuORF ENST00000411828.5_1_21:40547518-40555177:-|nuORF ENST00000411828.5_1_21:40547518-40555177:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.1966247558594 3 347.196701 1038.56827 NaN NaN NaN NaN NaN NaN NaN 93.71 1 89.719 89.219 90.219 -3.9907 0 0 0 0.23508 1 18358 18358 2.4985 0.59211 1 37791 9579 25397 25413 37151 37151 0.05053315000418479 RHRHRETKAR 10 Unmodified _RHRHRETKAR_ 0 0 0 ENST00000455639.6_1_4:156588198-156588336:+|nuORF ENST00000455639.6_1_4:156588198-156588336:+|nuORF ENST00000455639.6_1_4:156588198-156588336:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 449.3745422363281 3 449.592337 1345.75518 NaN NaN NaN NaN NaN NaN NaN 15.61 1 15.61 15.11 16.11 0 0 0 0 0.22588 1 2387 2387 0.15932 0 1 37792 10021 25398 25414 37152 37152 0.09613351608641096 RHRIKLAI 8 Unmodified _RHRIKLAI_ 0 0 0 REV__tr|U7T318|U7T318_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00359PE=4SV=1 REV__tr|U7T318|U7T318_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00359PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.2251892089844 3 336.225932 1005.65597 NaN NaN NaN NaN NaN NaN NaN 179.43 1 179.43 178.93 179.93 0 0 0 0 0.21486 1 37169 37169 0 0 1 + 37793 25346 25399 25415 37153 37153 0.15336560661819476 RHRIKLAI 8 Unmodified _RHRIKLAI_ 0 0 0 REV__tr|U7T318|U7T318_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00359PE=4SV=1 REV__tr|U7T318|U7T318_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00359PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.2166748046875 3 336.225932 1005.65597 NaN NaN NaN NaN NaN NaN NaN 179.63 1 179.63 179.13 180.13 0 0 0 0 0.21486 1 37213 37213 0 0 1 + 37794 25346 25399 25415 37154 37154 0.15336560661819476 RHRIKLAI 8 Unmodified _RHRIKLAI_ 0 0 0 REV__tr|U7T318|U7T318_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00359PE=4SV=1 REV__tr|U7T318|U7T318_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00359PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.22491455078125 3 336.225932 1005.65597 NaN NaN NaN NaN NaN NaN NaN 4.4076 1 3.7813 3.2813 4.2813 -0.62626 0 0 0 0.21486 1 80 80 0 0 1 + 37795 25346 25399 25415 37155 37155 0.15336560661819476 RHRIKLAI 8 Unmodified _RHRIKLAI_ 0 0 0 REV__tr|U7T318|U7T318_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00359PE=4SV=1 REV__tr|U7T318|U7T318_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00359PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.2252502441406 3 336.225932 1005.65597 NaN NaN NaN NaN NaN NaN NaN 5.3713 1 4.7451 4.2451 5.2451 -0.62626 0 0 0 0.21486 1 269 269 0 0 1 + 37796 25346 25399 25415 37156 37156 0.15336560661819476 RHRKRLKLLLV 11 Unmodified _RHRKRLKLLLV_ 0 0 0 REV__EFNB1|p.G291Afs*30|1|0.41|ENSG00000090776|chrX:68840480-68840480|G/-|frameshift_variant REV__EFNB1|p.G291Afs*30|1|0.41|ENSG00000090776|chrX:68840480-68840480|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 716.3614501953125 2 716.490979 1430.96741 NaN NaN NaN NaN NaN NaN NaN 168.14 1 168.14 167.64 168.64 0 0 0 0 0.23698 1 34407 34407 0.30703 0.30703 1 + 37797 13787 25400 25416 37157 37157 0.2691604996671231 RHRLLHCLRHQ 11 Unmodified _RHRLLHCLRHQ_ 0 0 0 REV__ENST00000377424.8_1_1:9098058-9099617:-|nuORF REV__ENST00000377424.8_1_1:9098058-9099617:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2669677734375 3 490.277472 1467.81059 NaN NaN NaN NaN NaN NaN NaN 151.47 1 146.3 145.8 146.8 -5.1759 0 0 0 0.22632 1 29359 29359 1.4551 0.94916 1 + 37798 21096 25401 25417 37158 37158 0.0953944180473627 RHRRKRERTRI 11 Unmodified _RHRRKRERTRI_ 0 0 0 REV__ENST00000343004.9_1_X:133931066-133931180:-|nuORF REV__ENST00000343004.9_1_X:133931066-133931180:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.282470703125 3 521.98909 1562.94544 NaN NaN NaN NaN NaN NaN NaN 149.95 1 149.95 149.45 150.45 0 0 0 0 0.23698 1 30015 30015 0.094841 0 1 + 37799 20729 25402 25418 37159 37159 0.18648638270838092 RHRRKRERTRI 11 Unmodified _RHRRKRERTRI_ 0 0 0 REV__ENST00000343004.9_1_X:133931066-133931180:-|nuORF REV__ENST00000343004.9_1_X:133931066-133931180:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2747192382812 3 521.98909 1562.94544 0.37688 0.00019673 3.4263 0.0017885 3.8031 0.0019852 522.323869174202 100.51 0.10339 96.516 96.446 96.55 -3.9895 4 2 2 0 0 0 0.89136 1 19308 19308 0 0 1 381640 + 37800 20729 25402 25418 37160 37160 0.18648638270838092 RHRRQRQKQLY 11 Unmodified _RHRRQRQKQLY_ 0 0 0 ENST00000509463.5_1_4:159100866-159120281:+|nuORF;ENST00000508752.1_1_4:159120001-159120281:+|nuORF ENST00000509463.5_1_4:159100866-159120281:+|nuORF ENST00000509463.5_1_4:159100866-159120281:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.677734375 3 523.637946 1567.89201 NaN NaN NaN NaN NaN NaN NaN 134.1 1 129.46 128.96 129.96 -4.6399 0 0 0 0.23698 1 26440 26440 0.50596 0.09769 1 37801 10717 25403 25419 37161 37161 0.13077840768346505 RHRRRAAR 8 Unmodified _RHRRRAAR_ 0 0 0 ENST00000396061.5_1_15:59949420-59949495:-|nuORF ENST00000396061.5_1_15:59949420-59949495:-|nuORF ENST00000396061.5_1_15:59949420-59949495:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20343017578125 3 360.223696 1077.64926 NaN NaN NaN NaN NaN NaN NaN 32.884 1 30.654 30.154 31.154 -2.2305 0 0 0 0.21486 1 6001 6001 3.2813 1.7994 1 37802 9440 25404 25420 37162 37162 0.1135406055382191 RHRRRRHHHHH 11 Unmodified _RHRRRRHHHHH_ 0 0 0 REV__BEAN1|p.P122Hfs*50|1|0.38|ENSG00000166546|chr16:66477631-66477631|C/-|frameshift_variant REV__BEAN1|p.P122Hfs*50|1|0.38|ENSG00000166546|chr16:66477631-66477631|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2796020507812 3 541.29714 1620.86959 NaN NaN NaN NaN NaN NaN NaN 133.24 1 128.6 128.1 129.1 -4.6399 0 0 0 0.22632 1 26270 26270 0.094841 0.094841 1 + 37803 13191 25405 25421 37163 37163 0.08399098933955429 RHRRRRRWWWR 11 Unmodified _RHRRRRRWWWR_ 0 0 0 REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 603.0148315429688 3 603.012341 1806.01519 NaN NaN NaN NaN NaN NaN NaN 169.78 1 164.85 164.35 165.35 -4.9295 0 0 0 0.23698 1 33538 33538 0 0 1 + 37804 20994 25406 25422 37164 37164 0.14442561730129455 RHRTVVLEQ 9 Unmodified _RHRTVVLEQ_ 0 0 0 CCDC13|p.G697Afs*3|1|0.38|ENSG00000244607|chr3:42709038-42709038|C/-|frameshift_variant;ENSG00000244607|ENST00000310232|CCDC13 CCDC13|p.G697Afs*3|1|0.38|ENSG00000244607|chr3:42709038-42709038|C/-|frameshift_variant CCDC13|p.G697Afs*3|1|0.38|ENSG00000244607|chr3:42709038-42709038|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 568.835205078125 2 569.327996 1136.64144 0.40227 0.00022902 2.286 0.0013015 2.6883 0.0015305 569.3268029076248 154.03 0.213 148.81 148.69 148.91 -5.2209 6 5 2 0 0 0 0.6226 1 29835 29835 4.897 4.8956 1 477170 37805 410 25407 25423 37165 37165 0.07858443723034725 RHSQGYAH 8 Unmodified _RHSQGYAH_ 0 0 0 REV__ENSG00000184560|ENST00000333870|SPEM2 REV__ENSG00000184560|ENST00000333870|SPEM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.03173828125 3 319.154614 954.442011 NaN NaN NaN NaN NaN NaN NaN 64.341 1 61.343 60.843 61.843 -2.9975 0 0 0 0.21486 1 12444 12444 3.2813 1.6287 1 + 37806 18903 25408 25424 37166 37166 -0.03703191504860115 RHSRVLCPR 9 Unmodified _RHSRVLCPR_ 0 0 0 ENST00000480273.5_1_20:62328052-62328088:+|nuORF ENST00000480273.5_1_20:62328052-62328088:+|nuORF ENST00000480273.5_1_20:62328052-62328088:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21435546875 3 375.213698 1122.61926 NaN NaN NaN NaN NaN NaN NaN 179.43 1 174.56 174.06 175.06 -4.868 0 0 0 0.19623 1 35742 35742 0.073264 0.069883 1 37807 10354 25409 25425 37167 37167 0.06285940773636867 RHSRVLCPR 9 Unmodified _RHSRVLCPR_ 0 0 0 ENST00000480273.5_1_20:62328052-62328088:+|nuORF ENST00000480273.5_1_20:62328052-62328088:+|nuORF ENST00000480273.5_1_20:62328052-62328088:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2142028808594 3 375.213698 1122.61926 NaN NaN NaN NaN NaN NaN NaN 179.64 1 174.77 174.27 175.27 -4.868 0 0 0 0.23508 1 35797 35797 0.96228 0 1 37808 10354 25409 25425 37168 37168 0.06285940773636867 RHSVQDGELT 10 Unmodified _RHSVQDGELT_ 0 0 0 REV__ENSG00000108055|ENST00000361804|SMC3 REV__ENSG00000108055|ENST00000361804|SMC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.1683349609375 3 381.191393 1140.55235 NaN NaN NaN NaN NaN NaN NaN 176.74 1 171.86 171.36 172.36 -4.8739 0 0 0 0.22588 1 35163 35163 0.69767 0 1 + 37809 15107 25410 25426 37169 37169 -0.012304360271400583 RHTSPYCA 8 Unmodified _RHTSPYCA_ 0 0 0 REV__ENSG00000138813|ENST00000326581|C4orf17 REV__ENSG00000138813|ENST00000326581|C4orf17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.1362609863281 3 312.144838 933.412685 NaN NaN NaN NaN NaN NaN NaN 84.635 1 84.635 84.135 85.135 0 0 0 0 0.21486 1 16511 16511 0.40072 0 1 + 37810 16496 25411 25427 37170 37170 -0.056684718453766436 RHTSPYCA 8 Unmodified _RHTSPYCA_ 0 0 0 REV__ENSG00000138813|ENST00000326581|C4orf17 REV__ENSG00000138813|ENST00000326581|C4orf17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.14910888671875 3 312.144838 933.412685 NaN NaN NaN NaN NaN NaN NaN 94.112 1 94.112 93.612 94.612 0 0 0 0 0.21486 1 18427 18427 0.40072 0 1 + 37811 16496 25411 25427 37171 37171 -0.056684718453766436 RHTSPYCA 8 Unmodified _RHTSPYCA_ 0 0 0 REV__ENSG00000138813|ENST00000326581|C4orf17 REV__ENSG00000138813|ENST00000326581|C4orf17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.144775390625 3 312.144838 933.412685 NaN NaN NaN NaN NaN NaN NaN 100.21 1 96.222 95.722 96.722 -3.9895 0 0 0 0.21486 1 19250 19250 0.40072 0 1 + 37812 16496 25411 25427 37172 37172 -0.056684718453766436 RHVKRKLSK 9 Unmodified _RHVKRKLSK_ 0 0 0 ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3179931640625 2 576.377823 1150.74109 NaN NaN NaN NaN NaN NaN NaN 133.76 1 133.76 133.26 134.26 0 0 0 0 0.19622 1 26465 26465 0.96228 0.26461 1 37813 5603 25412 25428 37173 37173 0.17175306127637668 RHVLCLPP 8 Unmodified _RHVLCLPP_ 0 0 0 ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENST00000481096.6_1_X:51808851-51809606:-|nuORF ENST00000470594.5_1_X:51805328-51809606:-|nuORF ENST00000470594.5_1_X:51805328-51809606:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.1443176269531 3 312.181224 933.521842 NaN NaN NaN NaN NaN NaN NaN 107.39 1 103.07 102.57 103.57 -4.32 0 0 0 0.21486 1 21149 21149 1.6526 0 1 37814 5017 25413 25429 37174 37174 0.0524215884476007 RHVLCLPP 8 Unmodified _RHVLCLPP_ 0 0 0 ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENST00000481096.6_1_X:51808851-51809606:-|nuORF ENST00000470594.5_1_X:51805328-51809606:-|nuORF ENST00000470594.5_1_X:51805328-51809606:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1802062988281 3 312.181224 933.521842 NaN NaN NaN NaN NaN NaN NaN 83.471 1 79.773 79.273 80.273 -3.6985 0 0 0 0.21486 1 15933 15933 0.40072 0 1 37815 5017 25413 25429 37175 37175 0.0524215884476007 RHVLCLPP 8 Unmodified _RHVLCLPP_ 0 0 0 ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENST00000481096.6_1_X:51808851-51809606:-|nuORF ENST00000470594.5_1_X:51805328-51809606:-|nuORF ENST00000470594.5_1_X:51805328-51809606:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1661071777344 3 312.181224 933.521842 NaN NaN NaN NaN NaN NaN NaN 85.789 1 82.06 81.56 82.56 -3.7289 0 0 0 0.21486 1 16394 16394 0.40072 0 1 37816 5017 25413 25429 37176 37176 0.0524215884476007 RHVPLRHSFMN 11 Unmodified _RHVPLRHSFMN_ 0 0 0 REV__nc|ENSG00000166908|Q8TBX8-2|PIP4K2C REV__nc|ENSG00000166908|Q8TBX8-2|PIP4K2C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24981689453125 3 465.247179 1392.71971 NaN NaN NaN NaN NaN NaN NaN 109.68 1 105.23 104.73 105.73 -4.4518 0 0 0 0.22632 1 21051 21051 5.4027 5.2917 1 + 37817 17888 25414 25430 37177 37177 0.03905553036634046 RHVVHGSH 8 Unmodified _RHVVHGSH_ 0 0 0 REV__ENSG00000181085|ENST00000338033|MAPK15 REV__ENSG00000181085|ENST00000338033|MAPK15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650695800781 3 310.166854 927.478731 NaN NaN NaN NaN NaN NaN NaN 10.935 1 9.8682 9.3682 10.368 -1.0664 0 0 0 0.21486 1 1209 1209 0.40072 0.1317 1 + 37818 18716 25415 25431 37178 37178 0.01209105111718145 RHWCRTAHPP 10 Unmodified _RHWCRTAHPP_ 0 0 0 ENST00000215912.9_3_22:31678754-31679060:-|nuORF ENST00000215912.9_3_22:31678754-31679060:-|nuORF ENST00000215912.9_3_22:31678754-31679060:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.3221740722656 3 420.877086 1259.60943 0.60683 0.0002554 0.39668 0.00016695 1.0035 0.00042235 420.87726527095464 23.168 0.77184 21.615 21.132 21.904 -1.5532 44 21 3 0 0 0 0.91149 1 3938 3938 0.77653 0 1 1904500 37819 8102 25416 25432 37179 37179 -0.00999247231766276 RHWVRLVW 8 Unmodified _RHWVRLVW_ 0 0 0 REV__ENST00000464003.1_1_2:206546756-206546807:+|nuORF REV__ENST00000464003.1_1_2:206546756-206546807:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33349609375 2 576.332885 1150.65122 NaN NaN NaN NaN NaN NaN NaN 50 1 46.993 46.493 47.493 -3.0068 0 0 0 0.23749 1 9180 9180 0.62683 0 1 + 37820 21930 25417 25433 37180 37180 0.08191676519095381 RIAGIRGIQGV 11 Unmodified _RIAGIRGIQGV_ 0 0 0 EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant;EFR3A|p.F760Lfs*4|1|0.26|ENSG00000132294|chr8:132002673-132002673|T/-|frameshift_variant;nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2093811035156 3 380.571768 1138.69348 0.12625 4.8049E-05 -0.16413 -6.2462E-05 -0.037873 -1.4414E-05 380.5716966464147 83.585 0.71625 79.712 79.328 80.044 -3.8736 58 19 4 0 0 0 0.36112 2 15922 15922;15925 22.775 8.5568 1 12946000 37821 921 25418 25434 37181;37182 37181 0.12967607136783954 RIAGIRGIQGV 11 Unmodified _RIAGIRGIQGV_ 0 0 0 EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant;EFR3A|p.F760Lfs*4|1|0.26|ENSG00000132294|chr8:132002673-132002673|T/-|frameshift_variant;nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21014404296875 3 380.571768 1138.69348 -0.7506 -0.00028566 0.71583 0.00027243 -0.034763 -1.323E-05 380.5720585244354 83.464 0.86353 79.766 79.319 80.183 -3.6985 68 24 4 0 0 0 0.056433 2 15951 15951;15953 33.445 10.709 1 12490000 37822 921 25418 25434 37183;37184 37183 0.12967607136783954 RIAGIRGIQGV 11 Unmodified _RIAGIRGIQGV_ 0 0 0 EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant;EFR3A|p.F760Lfs*4|1|0.26|ENSG00000132294|chr8:132002673-132002673|T/-|frameshift_variant;nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 380.571768 1138.69348 0.27738 0.00010556 -0.46169 -0.0001757 -0.1843 -7.014E-05 380.57162256654254 80.069 0.69614 80.069 79.722 80.418 0 0.25813 -0.0005998 NaN 33.445 49 19 3 NaN NaN NaN NaN 0 NaN NaN 0 12092000 37823 921 25418 25434 0.12967607136783954 RIAGIRGIQGV 11 Unmodified _RIAGIRGIQGV_ 0 0 0 EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant;EFR3A|p.F760Lfs*4|1|0.26|ENSG00000132294|chr8:132002673-132002673|T/-|frameshift_variant;nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.571768 1138.69348 -0.23963 -9.1195E-05 0.088972 3.386E-05 -0.15065 -5.7335E-05 380.57178253137636 83.306 0.7466 79.698 79.302 80.049 -3.6079 -0.11289 2.8895E-05 NaN 33.445 57 20 3 NaN NaN NaN NaN 0 NaN NaN 0 15581000 37824 921 25418 25434 0.12967607136783954 RIAIIYLLS 9 Unmodified _RIAIIYLLS_ 0 0 0 ENSG00000007384|ENST00000262316|RHBDF1 ENSG00000007384|ENST00000262316|RHBDF1 ENSG00000007384|ENST00000262316|RHBDF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 355.2366943359375 3 354.562099 1060.66447 -0.62285 -0.00022084 0.5982 0.0002121 -0.024643 -8.7375E-06 354.5622602803476 85.983 0.84021 82.254 81.853 82.693 -3.7289 69 23 4 0 0 0 0.48659 1 16470 16470 4.7159 0 1 22737000 37825 1024 25419 25435 37185 37185 0.13656069787793967 RIAIIYLLS 9 Unmodified _RIAIIYLLS_ 0 0 0 ENSG00000007384|ENST00000262316|RHBDF1 ENSG00000007384|ENST00000262316|RHBDF1 ENSG00000007384|ENST00000262316|RHBDF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 354.562099 1060.66447 -0.32285 -0.00011447 0.26612 9.4355E-05 -0.056732 -2.0115E-05 354.5621447402979 85.922 0.79416 82.195 81.756 82.55 -3.727 -0.034632 9.7842E-05 NaN 4.7159 60 21 4 NaN NaN NaN NaN 0 NaN NaN 0 24025000 37826 1024 25419 25435 0.13656069787793967 RIAIIYLLS 9 Unmodified _RIAIIYLLS_ 0 0 0 ENSG00000007384|ENST00000262316|RHBDF1 ENSG00000007384|ENST00000262316|RHBDF1 ENSG00000007384|ENST00000262316|RHBDF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 354.562099 1060.66447 0.25622 9.0847E-05 -0.38819 -0.00013764 -0.13197 -4.6792E-05 354.5619170681762 86.19 0.87901 82.24 81.839 82.718 -3.9503 0.0099789 -0.00059814 NaN 4.7159 57 24 3 NaN NaN NaN NaN 0 NaN NaN 0 21489000 37827 1024 25419 25435 0.13656069787793967 RICSSAPLLY 10 Unmodified _RICSSAPLLY_ 0 0 0 ENSG00000134256|ENST00000682167|CD101;ENST00000467588.1_1_1:117575773-117576720:+|nuORF ENSG00000134256|ENST00000682167|CD101 ENSG00000134256|ENST00000682167|CD101 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2051696777344 3 374.870715 1121.59032 -0.7896 -0.000296 0.74263 0.00027839 -0.046963 -1.7605E-05 374.8709684582952 82.932 0.65427 79.234 78.9 79.554 -3.6985 42 18 3 0 0 0 0.70859 1 15839 15839 10.315 3.2135 1 2603300 37828 3838 25420 25436 37186 37186 0.0343835863395725 RIDEQLEAI 9 Unmodified _RIDEQLEAI_ 0 0 0 REV__ENSG00000092850|ENST00000207457|TEKT2 REV__ENSG00000092850|ENST00000207457|TEKT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7752075195312 2 543.793121 1085.57169 0.38128 0.00020733 -0.68931 -0.00037484 -0.30803 -0.00016751 543.7933586261337 122.81 0.60631 118.22 117.88 118.48 -4.5926 27 16 3 0 0 0 0.5428 1 23684 23684 4.897 0 1 1189400 + 37829 14588 25421 25437 37187 37187 0.032325202637593975 RIDHIVTV 8 Unmodified _RIDHIVTV_ 0 0 0 REV__CON__Q3KUS7 REV__CON__Q3KUS7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0152893066406 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 84.179 1 84.179 83.679 84.679 0 0 0 0 0.21486 1 16415 16415 3.2813 0 1 + + 37830 13543 25422 25438 37188 37188 0.07245180025722675 RIDPPSEIY 9 Unmodified _RIDPPSEIY_ 0 0 0 SFMBT2|p.M253I|1|0.25|ENSG00000198879|chr10:7283917-7283917|C/A|missense_variant SFMBT2|p.M253I|1|0.25|ENSG00000198879|chr10:7283917-7283917|C/A|missense_variant SFMBT2|p.M253I|1|0.25|ENSG00000198879|chr10:7283917-7283917|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7901611328125 2 545.282389 1088.55022 0.15354 8.3721E-05 -0.50992 -0.00027805 -0.35638 -0.00019433 545.2820789550887 86.226 1.1745 82.498 82.009 83.184 -3.727 128 32 7 0 0 0 0.62102 1 16911 16911 11.64 1.5664 1 317050000 37831 25659 25423 25439 37189 37189 0.009491352350551097 RIDPPSEIY 9 Unmodified _RIDPPSEIY_ 0 0 0 SFMBT2|p.M253I|1|0.25|ENSG00000198879|chr10:7283917-7283917|C/A|missense_variant SFMBT2|p.M253I|1|0.25|ENSG00000198879|chr10:7283917-7283917|C/A|missense_variant SFMBT2|p.M253I|1|0.25|ENSG00000198879|chr10:7283917-7283917|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7893676757812 2 545.282389 1088.55022 0.1592 8.6809E-05 -0.49524 -0.00027005 -0.33604 -0.00018324 545.282120975935 86.198 1.5842 82.469 81.991 83.575 -3.7289 166 44 7 0 0 0 0.62102 1 16530 16530 11.64 11.64 1 324640000 37832 25659 25423 25439 37190 37190 0.009491352350551097 RIDSTEVIY 9 Unmodified _RIDSTEVIY_ 0 0 0 STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant;STK11|p.P281Rfs*6|1|0.43|ENSG00000118046|chr19:1221315-1221315|C/-|frameshift_variant;ENST00000589152.5_1_19:1206825-1221398:+|nuORF;nc|ENSG00000118046|Q15831-2|STK11;ENSG00000118046|ENST00000326873|STK11 STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7818603515625 2 548.287671 1094.56079 0.10045 5.5076E-05 0.087525 4.7989E-05 0.18798 0.00010307 548.2876461357217 69.355 0.53297 66.175 65.904 66.437 -3.1796 33 14 3 0 0 0 0.54851 1 13451 13451 1.2148 0 1 7354300 37833 3013 25424 25440 37191 37191 0.01729117889499321 RIEEDNLTY 9 Unmodified _RIEEDNLTY_ 0 0 0 ENST00000483412.5_1_9:123170580-123298708:-|nuORF;CDK5RAP2|p.L1409*|1|0.2|ENSG00000136861|chr9:120415111-120415111|A/-|frameshift_variant;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2 ENST00000483412.5_1_9:123170580-123298708:-|nuORF ENST00000483412.5_1_9:123170580-123298708:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3341674804688 2 576.78021 1151.54587 0.33817 0.00019505 -0.11477 -6.6198E-05 0.2234 0.00012885 576.7801558713593 68.276 0.65912 64.885 64.526 65.185 -3.3903 29 18 2 0 0 0 0.64397 1 12905 12905 31.268 3.6395 1 5152900 37834 471 25425 25441 37192 37192 -0.023843739785206708 RIFIDYIVKSK 11 Unmodified _RIFIDYIVKSK_ 0 0 0 tr|U7SMG5|U7SMG5_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01858PE=4SV=1 tr|U7SMG5|U7SMG5_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01858PE=4SV=1 tr|U7SMG5|U7SMG5_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01858PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5398254394531 3 461.27825 1380.81292 NaN NaN NaN NaN NaN NaN NaN 85.673 1 85.673 85.173 86.173 0 0 0 0 0.22632 1 16721 16721 0.0059557 0 1 37835 26008 25426 25442 37193 37193 0.13774755970803199 RIHAELAT 8 Unmodified _RIHAELAT_ 0 0 0 REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.0390625 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 63.861 1 60.604 60.104 61.104 -3.2567 0 0 0 0.21486 1 11983 11983 3.9444 0 1 + 37836 25559 25427 25443 37194 37194 0.044843204745689036 RIHAELAT 8 Unmodified _RIHAELAT_ 0 0 0 REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant REV__ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.2260437011719 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 115.92 1 111.56 111.06 112.06 -4.3585 0 0 0 0.21486 1 22316 22316 1.6526 0 1 + 37837 25559 25427 25443 37195 37195 0.044843204745689036 RIHKLHNKKIF 11 Unmodified _RIHKLHNKKIF_ 0 0 0 REV__tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1 REV__tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7423400878906 3 478.63325 1432.87792 -0.045385 -2.1723E-05 -0.90523 -0.00043327 -0.95062 -0.000455 478.6326814535048 18.429 0.17456 17.118 17.002 17.177 -1.3109 7 4 2 0 0 0 0.96216 1 3002 3002 1.3296 0.63198 1 344320 + 37838 25003 25428 25444 37196 37196 0.17879795287331035 RIHPPPPP 8 Unmodified _RIHPPPPP_ 0 0 0 REV__nc|ENSG00000127329|P23467-4|PTPRB REV__nc|ENSG00000127329|P23467-4|PTPRB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 455.76702880859375 2 455.766512 909.518471 NaN NaN NaN NaN NaN NaN NaN 77.379 1 73.72 73.22 74.22 -3.6588 0 0 0 0.23711 1 14731 14731 0.62683 0 1 + 37839 15883 25429 25445 37197 37197 0.06009232062422143 RIHTGERAFK 10 Unmodified _RIHTGERAFK_ 0 0 0 ENSG00000175322|ENST00000590202|ZNF519 ENSG00000175322|ENST00000590202|ZNF519 ENSG00000175322|ENST00000590202|ZNF519 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.2998962402344 3 405.563273 1213.66799 NaN NaN NaN NaN NaN NaN NaN 156.37 1 151.1 150.6 151.6 -5.2712 0 0 0 0.22588 1 30325 30325 3.3196 0.58445 1 37840 6401 25430 25446 37198 37198 0.06970132614355862 RIHWYILHCRS 11 Unmodified _RIHWYILHCRS_ 0 0 0 REV__ENST00000424120.5_2_4:15554859-15556796:+|nuORF REV__ENST00000424120.5_2_4:15554859-15556796:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.386962890625 2 742.390605 1482.76666 NaN NaN NaN NaN NaN NaN NaN 38.81 1 38.81 38.31 39.31 0 0 0 0 0.22632 1 7199 7199 0.026206 0 1 + 37841 21541 25431 25447 37199 37199 0.044584125877690894 RIIDVVYNA 9 Unmodified _RIIDVVYNA_ 0 0 0 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2660522460938 2 531.800749 1061.58694 -0.25765 -0.00013702 0.1461 7.7698E-05 -0.11155 -5.9322E-05 531.8008550716675 105.75 1.645 101.48 100.89 102.53 -4.2638 156 46 5 0 0 0 0.15889 3 20791 20791;20810;20842 67.187 42.306 1 355180000 37842 4446 25432 25448 37200;37201;37202 37200 0.058614318515992636 RIIDVVYNA 9 Unmodified _RIIDVVYNA_ 0 0 0 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2766723632812 2 531.800749 1061.58694 0.3925 0.00020873 -0.40051 -0.00021299 -0.0080136 -4.2616E-06 531.8006004238371 105.83 2.2189 101.45 100.88 103.09 -4.3764 156 63 4 0 0 0 0.11483 4 20307 20263;20307;20311;20337 60.47 40.844 1 296610000 37843 4446 25432 25448 37203;37204;37205;37206 37204 0.058614318515992636 RIIIAILLLN 10 Unmodified _RIIIAILLLN_ 0 0 0 tr|U7SSV8|U7SSV8_FUSNUDUF3307domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01391PE=4SV=1 tr|U7SSV8|U7SSV8_FUSNUDUF3307domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01391PE=4SV=1 tr|U7SSV8|U7SSV8_FUSNUDUF3307domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01391PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.33154296875 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 156.88 1 152.09 151.59 152.59 -4.7885 0 0 0 2.8426 1 31197 31197 0.043787 0 1 37844 26113 25433 25449 37207 37207 0.21080593638657774 RIKHHKVNDG 10 Unmodified _RIKHHKVNDG_ 0 0 0 REV__ENST00000418510.1_1_22:26043331-26044389:+|nuORF REV__ENST00000418510.1_1_22:26043331-26044389:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2982788085938 2 602.338895 1202.66324 NaN NaN NaN NaN NaN NaN NaN 160.21 1 160.21 159.71 160.71 0 0 0 0 0.22576 1 32169 32169 14.838 1.7958 1 + 37845 21485 25434 25450 37208 37208 0.07001248471601684 RIKMKKAR 8 Unmodified _RIKMKKAR_ 0 0 0 nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.2279968261719 3 344.227056 1029.65934 NaN NaN NaN NaN NaN NaN NaN 59.477 1 56.551 56.051 57.051 -2.9258 0 0 0 0.21486 1 11437 11437 3.5965 1.098 1 37846 5114 25435 25451 37209 37209 0.14569487444168772 RIKRLKIYGP 10 Unmodified _RIKRLKIYGP_ 0 0 0 REV__ENST00000537646.5_1_12:7074850-7076486:-|nuORF REV__ENST00000537646.5_1_12:7074850-7076486:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7680053710938 2 622.403507 1242.79246 NaN NaN NaN NaN NaN NaN NaN 118.59 1 114.09 113.59 114.59 -4.502 0 0 0 0.22588 1 23384 23384 1.6526 0 1 + 37847 19680 25436 25452 37210 37210 0.18077630101674913 RILAACFL 8 Unmodified _RILAACFL_ 0 0 0 ENST00000433104.2_1_3:48731651-48732212:-|nuORF ENST00000433104.2_1_3:48731651-48732212:-|nuORF ENST00000433104.2_1_3:48731651-48732212:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7663269042969 2 453.765123 905.515694 NaN NaN NaN NaN NaN NaN NaN 139 1 134.15 133.65 134.65 -4.8492 0 0 0 0.21486 1 26795 26795 10.183 0.83596 1 37848 9806 25437 25453 37211 37211 0.05915640613238793 RILAACFL 8 Unmodified _RILAACFL_ 0 0 0 ENST00000433104.2_1_3:48731651-48732212:-|nuORF ENST00000433104.2_1_3:48731651-48732212:-|nuORF ENST00000433104.2_1_3:48731651-48732212:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7645568847656 2 453.765123 905.515694 NaN NaN NaN NaN NaN NaN NaN 154.55 1 149.3 148.8 149.8 -5.2526 0 0 0 0.2396 1 29968 29968 0.13829 0 1 37849 9806 25437 25453 37212 37212 0.05915640613238793 RILATHLHY 9 Unmodified _RILATHLHY_ 0 0 0 ENSG00000138068|ENST00000535679|SULT6B1 ENSG00000138068|ENST00000535679|SULT6B1 ENSG00000138068|ENST00000535679|SULT6B1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2103271484375 3 375.217214 1122.62981 NaN NaN NaN NaN NaN NaN NaN 12.812 1 11.683 11.183 12.183 -1.1293 0 0 0 0.1963 1 1607 1607 0.073264 0.069883 1 37850 4144 25438 25454 37213 37213 0.07340246699709496 RILIVHLKR 9 Unmodified _RILIVHLKR_ 0 0 0 ENSG00000134588|ENST00000511190|USP26 ENSG00000134588|ENST00000511190|USP26 ENSG00000134588|ENST00000511190|USP26 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 383.2469787597656 3 383.264387 1146.77133 NaN NaN NaN NaN NaN NaN NaN 151.74 1 151.74 151.24 152.24 0 0 0 0 0.23508 1 30393 30393 0.26902 0 1 37851 3863 25439 25455 37214 37214 0.20381664792830634 RILKKKKKKTR 11 Unmodified _RILKKKKKKTR_ 0 0 0 ENST00000427154.1_1_1:23346896-23414436:-|nuORF ENST00000427154.1_1_1:23346896-23414436:-|nuORF ENST00000427154.1_1_1:23346896-23414436:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 714.004638671875 2 714.006462 1425.99837 NaN NaN NaN NaN NaN NaN NaN 36.012 1 36.012 35.512 36.512 0 0 0 0 0.23698 1 6629 6629 0 0 1 37852 9739 25440 25456 37215 37215 0.3024120328095705 RILLERLRQRQ 11 Unmodified _RILLERLRQRQ_ 0 0 0 REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;REV__KMT2D|p.V3089Wfs*30|1|0.12|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant;REV__KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 493.74365234375 3 494.310947 1479.91101 0.18946 9.3652E-05 -0.40723 -0.0002013 -0.21777 -0.00010765 494.3120724449123 127.58 0.10255 127.58 127.51 127.61 0 4 2 2 0 0 0 0.96227 1 25179 25179 0.094841 0.094841 1 965520 + 37853 17938;23733;23731 25441 25457 37216 37216 0.1902537733938061 RILPEVKVE 9 Unmodified _RILPEVKVE_ 0 0 0 ENST00000533312.1_1_1:207087089-207095229:-|nuORF;nc|ENSG00000162894|O60667-3|FCMR;ENSG00000162894|ENST00000367091|FCMR ENST00000533312.1_1_1:207087089-207095229:-|nuORF ENST00000533312.1_1_1:207087089-207095229:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2805786132812 2 541.832049 1081.64954 0.34807 0.0001886 -0.85143 -0.00046133 -0.50336 -0.00027273 541.8315756105922 125.59 0.92684 120.99 120.44 121.36 -4.5984 42 25 2 0 0 0 0.79986 1 24781 24781 13.615 0.74226 1 2248400 37854 5379 25442 25458 37217 37217 0.1119857791979939 RILQLVVRRRQ 11 Unmodified _RILQLVVRRRQ_ 0 0 0 REV__ENST00000261497.8_1_17:20905422-20905743:-|nuORF REV__ENST00000261497.8_1_17:20905422-20905743:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015380859375 4 359.987572 1435.92118 -2.2935 -0.00082564 1.2536 0.0004513 -1.0399 -0.00037434 359.98792871355005 4.4209 0.49773 3.412 3.0937 3.5914 -1.0089 14 13 2 0 0 0 0.96227 1 28 28 0.08335 0.08335 1 81213 + 37855 20182 25443 25459 37218 37218 0.22065985064637061 RINFFRNAL 9 Unmodified _RINFFRNAL_ 0 0 0 PSTPIP2|p.C221S|1|0.06|ENSG00000152229|chr18:45993685-45993685|A/T|missense_variant;nc|ENSG00000152229|Q9H939-2|PSTPIP2;ENSG00000152229|ENST00000409746|PSTPIP2 PSTPIP2|p.C221S|1|0.06|ENSG00000152229|chr18:45993685-45993685|A/T|missense_variant PSTPIP2|p.C221S|1|0.06|ENSG00000152229|chr18:45993685-45993685|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 384.2217712402344 3 384.220847 1149.64071 NaN NaN NaN NaN NaN NaN NaN 55.933 1 52.757 52.257 53.257 -3.1761 0 0 0 0.23508 1 10396 10396 2.4985 0 1 37856 4911 25444 25460 37219 37219 0.07187649073989633 RINYWKKAFRS 11 Unmodified _RINYWKKAFRS_ 0 0 0 ENST00000465851.1_1_2:196578167-196578251:+|nuORF ENST00000465851.1_1_2:196578167-196578251:+|nuORF ENST00000465851.1_1_2:196578167-196578251:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2702941894531 3 490.277244 1467.8099 NaN NaN NaN NaN NaN NaN NaN 132.75 1 127.89 127.39 128.39 -4.8527 0 0 0 0.22632 1 25501 25501 1.4551 0 1 37857 10127 25445 25461 37220 37220 0.09470925636696848 RIPAYFVTV 9 Unmodified _RIPAYFVTV_ 0 0 0 ENST00000461874.1_1_6:31749609-31749932:-|nuORF;ENST00000483275.1_1_6:31749724-31750195:-|nuORF;VARS|p.L801Wfs*10|1|0.3|ENSG00000204394|chr6:31781707-31781707|A/-|frameshift_variant;ENSG00000204394|ENST00000375663|VARS1 ENST00000461874.1_1_6:31749609-31749932:-|nuORF ENST00000461874.1_1_6:31749609-31749932:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2832641601562 2 533.30821 1064.60187 0.10549 5.6261E-05 -0.30495 -0.00016263 -0.19946 -0.00010637 533.30810801093 143.98 1.0301 143.98 143.24 144.27 0 35 29 2 0 0 0 0.25183 3 28697 28689;28697;28772 34.402 18.555 1 3722000 37858 7576 25446 25462 37221;37222;37223 37222 0.07214923719607214 RIPAYFVTV 9 Unmodified _RIPAYFVTV_ 0 0 0 ENST00000461874.1_1_6:31749609-31749932:-|nuORF;ENST00000483275.1_1_6:31749724-31750195:-|nuORF;VARS|p.L801Wfs*10|1|0.3|ENSG00000204394|chr6:31781707-31781707|A/-|frameshift_variant;ENSG00000204394|ENST00000375663|VARS1 ENST00000461874.1_1_6:31749609-31749932:-|nuORF ENST00000461874.1_1_6:31749609-31749932:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.267822265625 2 533.30821 1064.60187 0.17567 9.3685E-05 0.3569 0.00019034 0.53257 0.00028402 533.3082632551003 148.72 0.67801 144.01 143.58 144.26 -4.7095 37 18 3 0 0 0 0.067773 4 29524 29474;29516;29524;29566 65.235 31.795 1 5327100 37859 7576 25446 25462 37224;37225;37226;37227 37226 0.07214923719607214 RIPAYFVTV 9 Unmodified _RIPAYFVTV_ 0 0 0 ENST00000461874.1_1_6:31749609-31749932:-|nuORF;ENST00000483275.1_1_6:31749724-31750195:-|nuORF;VARS|p.L801Wfs*10|1|0.3|ENSG00000204394|chr6:31781707-31781707|A/-|frameshift_variant;ENSG00000204394|ENST00000375663|VARS1 ENST00000461874.1_1_6:31749609-31749932:-|nuORF ENST00000461874.1_1_6:31749609-31749932:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2830810546875 2 533.30821 1064.60187 0.49915 0.0002662 -0.21503 -0.00011468 0.28412 0.00015152 533.307944208575 149.09 0.82823 143.9 143.42 144.25 -5.1994 33 23 2 0 0 0 0.11717 2 28853 28853;28911 49.933 20.851 1 5507500 37860 7576 25446 25462 37228;37229 37228 0.07214923719607214 RIPAYFVTV 9 Unmodified _RIPAYFVTV_ 0 0 0 ENST00000461874.1_1_6:31749609-31749932:-|nuORF;ENST00000483275.1_1_6:31749724-31750195:-|nuORF;VARS|p.L801Wfs*10|1|0.3|ENSG00000204394|chr6:31781707-31781707|A/-|frameshift_variant;ENSG00000204394|ENST00000375663|VARS1 ENST00000461874.1_1_6:31749609-31749932:-|nuORF ENST00000461874.1_1_6:31749609-31749932:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.260986328125 2 533.30821 1064.60187 0.39547 0.00021091 -0.40214 -0.00021446 -0.0066658 -3.5549E-06 533.3079048524975 148.92 0.66731 143.86 143.54 144.2 -5.0595 31 18 2 0 0 0 0.44932 1 28791 28791 22.736 4.6013 1 4362000 37861 7576 25446 25462 37230 37230 0.07214923719607214 RIPCDLAMC 9 Unmodified _RIPCDLAMC_ 0 0 0 ZMAT3|p.R234C|1|0.3|ENSG00000172667|chr3:179025187-179025187|G/A|missense_variant ZMAT3|p.R234C|1|0.3|ENSG00000172667|chr3:179025187-179025187|G/A|missense_variant ZMAT3|p.R234C|1|0.3|ENSG00000172667|chr3:179025187-179025187|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.1595764160156 3 341.159102 1020.45548 NaN NaN NaN NaN NaN NaN NaN 96.178 1 92.297 91.797 92.797 -3.881 0 0 0 0.23508 1 18460 18460 2.7352 0.89096 1 37862 26603 25447 25463 37231 37231 -0.05393161103813782 RIPDTKHI 8 Unmodified _RIPDTKHI_ 0 0 0 nc|ENSG00000008277|Q9P0K1-4|ADAM22;nc|ENSG00000008277|Q9P0K1-3|ADAM22;nc|ENSG00000008277|Q9P0K1-5|ADAM22;nc|ENSG00000008277|Q9P0K1-2|ADAM22;nc|ENSG00000008277|Q9P0K1|ADAM22;ENSG00000008277|ENST00000413139|ADAM22 nc|ENSG00000008277|Q9P0K1-4|ADAM22 nc|ENSG00000008277|Q9P0K1-4|ADAM22 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2669677734375 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 73.057 1 69.519 69.019 70.019 -3.5385 0 0 0 0.21486 1 13857 13857 12.532 1.4171 1 37863 1040 25448 25464 37232 37232 0.07092582399980074 RIPFDTQDFFR 11 Unmodified _RIPFDTQDFFR_ 0 0 0 REV__PKHD1L1|p.V302I|1|0.44|ENSG00000205038|chr8:109396119-109396119|G/A|missense_variant REV__PKHD1L1|p.V302I|1|0.44|ENSG00000205038|chr8:109396119-109396119|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2455749511719 3 481.245609 1440.715 0.11845 5.7005E-05 -1.0818 -0.00052059 -0.96331 -0.00046359 481.2452424399842 127.28 0.62076 122.66 122.3 122.92 -4.6172 22 17 2 0 0 0 0.63394 1 25100 25100 0.50596 0.33396 1 1573800 + 37864 24477 25449 25465 37233 37233 0.012269473748119708 RIPLVRNRR 9 Unmodified _RIPLVRNRR_ 0 0 0 nc|ENSG00000205482|P0DV79|SPDYE18;ENSG00000185040|ENST00000633306|SPDYE16 nc|ENSG00000205482|P0DV79|SPDYE18 nc|ENSG00000205482|P0DV79|SPDYE18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2611083984375 2 590.380897 1178.74724 NaN NaN NaN NaN NaN NaN NaN 155.52 1 150.24 149.74 150.74 -5.2854 0 0 0 0.19622 1 30165 30165 0.96228 0.95889 1 37865 6956 25450 25466 37234 37234 0.16501824359170314 RIPRPPFP 8 Unmodified _RIPRPPFP_ 0 0 0 ENST00000575627.5_1_16:30064532-30064793:+|nuORF ENST00000575627.5_1_16:30064532-30064793:+|nuORF ENST00000575627.5_1_16:30064532-30064793:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2598571777344 2 490.295436 978.57632 0.13838 6.7848E-05 -0.04323 -2.1195E-05 0.095153 4.6653E-05 490.29534443992975 129.31 1.0086 124.68 124.12 125.12 -4.6292 52 28 3 0 0 0 8448 1 25446 25446 6.2058 0 1 2672700 37866 11455 25451 25467 37235 37235 0.08617493987833313 RIPRSGRREWR 11 Unmodified _RIPRSGRREWR_ 0 0 0 ENST00000542075.5_1_17:79258951-79259371:-|nuORF ENST00000542075.5_1_17:79258951-79259371:-|nuORF ENST00000542075.5_1_17:79258951-79259371:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27130126953125 3 490.283392 1467.82835 NaN NaN NaN NaN NaN NaN NaN 159.49 1 154.69 154.19 155.19 -4.7952 0 0 0 0.22632 1 31707 31707 0.026206 0 1 37867 11084 25452 25468 37236 37236 0.11314480331247978 RIPSIKIPLN 10 Unmodified _RIPSIKIPLN_ 0 0 0 ENSG00000178665|ENST00000429591|ZNF713 ENSG00000178665|ENST00000429591|ZNF713 ENSG00000178665|ENST00000429591|ZNF713 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 384.2190856933594 3 384.248403 1149.72338 NaN NaN NaN NaN NaN NaN NaN 52.579 1 52.579 52.079 53.079 0 0 0 0 0.22588 1 9996 9996 3.5871 0 1 37868 6586 25453 25469 37237 37237 0.1545054608211558 RIPSIKIPLN 10 Unmodified _RIPSIKIPLN_ 0 0 0 ENSG00000178665|ENST00000429591|ZNF713 ENSG00000178665|ENST00000429591|ZNF713 ENSG00000178665|ENST00000429591|ZNF713 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 384.2011413574219 3 384.248403 1149.72338 NaN NaN NaN NaN NaN NaN NaN 52.615 1 52.615 52.115 53.115 0 0 0 0 0.22588 1 10004 10004 3.5871 0 1 37869 6586 25453 25469 37238 37238 0.1545054608211558 RIQEFFRR 8 Unmodified _RIQEFFRR_ 0 0 0 nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6;ENST00000478668.1_1_1:168014424-168033024:+|nuORF nc|ENSG00000143164|Q58WW2|DCAF6 nc|ENSG00000143164|Q58WW2|DCAF6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3276977539062 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 164.11 1 159.06 158.56 159.56 -5.0446 0 0 0 0.22847 1 31978 31978 0.68139 0 1 37870 4460 25454 25470 37239 37239 0.06666764931219404 RIQETQAEL 9 Unmodified _RIQETQAEL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79150390625 2 544.290745 1086.56694 0.60617 0.00032994 -2.3874 -0.0012994 -1.7812 -0.00096949 544.2892467352239 44.193 0.54266 44.193 43.814 44.357 0 34 15 3 0 0 0 0.71913 1 8300 8300 15.248 0 1 3145600 37871 1532 25455 25471 37240 37240 0.027116361209891693 RIQETQAEL 9 Unmodified _RIQETQAEL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 544.290745 1086.56694 0.16842 9.1669E-05 -1.8571 -0.0010108 -1.6887 -0.00091916 544.2896334310218 47.071 0.37852 44.23 44.006 44.385 -2.8409 0.03108 0.00022473 NaN 15.248 26 10 3 NaN NaN NaN NaN 0 NaN NaN 0 6801300 37872 1532 25455 25471 0.027116361209891693 RIQETQAEL 9 Unmodified _RIQETQAEL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 544.290745 1086.56694 -0.0090631 -4.933E-06 -2.3301 -0.0012683 -2.3392 -0.0012732 544.2894796404067 47.136 0.45077 44.186 43.983 44.433 -2.9499 -0.012613 -0.00029018 NaN 15.248 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3832100 37873 1532 25455 25471 0.027116361209891693 RIQRRLLLRL 10 Unmodified _RIQRRLLLRL_ 0 0 0 REV__ENST00000605573.1_1_3:187871072-187871573:-|nuORF REV__ENST00000605573.1_1_3:187871072-187871573:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 335.2318420410156 4 334.980753 1335.89391 0.13998 4.6889E-05 -0.68592 -0.00022977 -0.54595 -0.00018288 334.9803289870581 75.502 0.87035 71.779 71.162 72.033 -3.7227 36 24 2 0 0 0 0.52989 1 14250 14250 1.9064 0.45126 1 1098200 + 37874 23450 25456 25472 37241 37241 0.23939501524250772 RIQTLKAKIR 10 Unmodified _RIQTLKAKIR_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 613.9075317382812 2 613.906414 1225.79827 NaN NaN NaN NaN NaN NaN NaN 167.47 1 167.47 166.97 167.97 0 0 0 0 2.8426 1 34224 34224 0.063865 0 1 + 37875 16048 25457 25473 37242 37242 0.1944072861335826 RIREWELRRQQ 11 Unmodified _RIREWELRRQQ_ 0 0 0 REV__ITSN2|p.R456Q|1|0.27|ENSG00000198399|chr2:24298792-24298792|C/T|missense_variant REV__ITSN2|p.R456Q|1|0.27|ENSG00000198399|chr2:24298792-24298792|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.402099609375 2 785.439672 1568.86479 NaN NaN NaN NaN NaN NaN NaN 147.26 1 142.26 141.76 142.76 -5 0 0 0 0.22632 1 28504 28504 1.4551 0 1 + 37876 23687 25458 25474 37243 37243 0.10311312437283959 RIRFSKLLLK 10 Unmodified _RIRFSKLLLK_ 0 0 0 nc|ENSG00000257127|Q5K131|CLLU1 nc|ENSG00000257127|Q5K131|CLLU1 nc|ENSG00000257127|Q5K131|CLLU1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2386779785156 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 84.144 1 80.48 79.98 80.98 -3.6641 0 0 0 0.22588 1 16450 16450 0.69767 0 1 37877 12632 25459 25475 37244 37244 0.21390489652844735 RIRFSKLLLK 10 Unmodified _RIRFSKLLLK_ 0 0 0 nc|ENSG00000257127|Q5K131|CLLU1 nc|ENSG00000257127|Q5K131|CLLU1 nc|ENSG00000257127|Q5K131|CLLU1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2431335449219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 67.161 1 63.665 63.165 64.165 -3.4965 0 0 0 0.22588 1 12596 12596 0.69767 0.53834 1 37878 12632 25459 25475 37245 37245 0.21390489652844735 RIRLRRRDIYL 11 Unmodified _RIRLRRRDIYL_ 0 0 0 ENST00000488719.1_1_22:30975561-30975981:-|nuORF ENST00000488719.1_1_22:30975561-30975981:-|nuORF ENST00000488719.1_1_22:30975561-30975981:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 510.6570739746094 3 510.654826 1528.94265 NaN NaN NaN NaN NaN NaN NaN 164.81 1 164.81 164.31 165.31 0 0 0 0 0.22632 1 33373 33373 7.0341 4.3021 1 37879 10488 25460 25476 37246 37246 0.19933370093372105 RIRPRLKLK 9 Unmodified _RIRPRLKLK_ 0 0 0 REV__ENSG00000270765|ENST00000604641|GAS2L2 REV__ENSG00000270765|ENST00000604641|GAS2L2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.255859375 2 590.411666 1178.80878 NaN NaN NaN NaN NaN NaN NaN 174.53 1 169.64 169.14 170.14 -4.8845 0 0 0 0.19631 1 34674 34674 0.20686 0.066965 1 + 37880 19914 25461 25477 37247 37247 0.22652756058414525 RIRQEDLRRLI 11 Unmodified _RIRQEDLRRLI_ 0 0 0 nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant nc|ENSG00000038382|O75962-4|TRIO nc|ENSG00000038382|O75962-4|TRIO MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2544860839844 3 489.967069 1466.87938 NaN NaN NaN NaN NaN NaN NaN 162.15 1 156.96 156.46 157.46 -5.1878 0 0 0 0.23689 1 31478 31478 2.8433 0 1 37881 1182 25462 25478 37248 37248 0.16461384585431915 RIRVAVKVPI 10 Unmodified _RIRVAVKVPI_ 0 0 0 REV__KIF27|p.K1223Tfs*2|1|0.11|ENSG00000165115|chr9:83842289-83842290|TT/-|frameshift_variant REV__KIF27|p.K1223Tfs*2|1|0.11|ENSG00000165115|chr9:83842289-83842290|TT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3323364257812 2 575.892775 1149.771 NaN NaN NaN NaN NaN NaN NaN 34.904 1 32.51 32.01 33.01 -2.3938 0 0 0 2.8426 1 6420 6420 0.043787 0.043223 1 + 37882 17740 25463 25479 37249 37249 0.20210245072962607 RIRVWHKRHFY 11 Unmodified _RIRVWHKRHFY_ 0 0 0 REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1 REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27978515625 3 533.304016 1596.89022 NaN NaN NaN NaN NaN NaN NaN 159.48 1 159.48 158.98 159.98 0 0 0 0 0.22632 1 32021 32021 0.026206 0 1 + 37883 21153 25464 25480 37250 37250 0.11564831750388294 RIRVWHKRHFY 11 Unmodified _RIRVWHKRHFY_ 0 0 0 REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1 REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2688598632812 3 533.304016 1596.89022 NaN NaN NaN NaN NaN NaN NaN 120.86 1 116.33 115.83 116.83 -4.5221 0 0 0 0.22632 1 23824 23824 0.094841 0 1 + 37884 21153 25464 25480 37251 37251 0.11564831750388294 RIRVWHKRHFY 11 Unmodified _RIRVWHKRHFY_ 0 0 0 REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1 REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2742919921875 3 533.304016 1596.89022 NaN NaN NaN NaN NaN NaN NaN 120.92 1 116.4 115.9 116.9 -4.5221 0 0 0 0.22632 1 23838 23838 0.094841 0 1 + 37885 21153 25464 25480 37252 37252 0.11564831750388294 RISFTKGL 8 Unmodified _RISFTKGL_ 0 0 0 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5350341796875 2 461.279452 920.544351 NaN NaN NaN NaN NaN NaN NaN 113.89 1 109.44 108.94 109.94 -4.4539 0 0 0 0.21486 1 22439 22439 5.7604 0 1 + 37886 12964 25465 25481 37253 37253 0.08090081514046688 RISLMKRVIK 10 Unmodified _RISLMKRVIK_ 0 0 0 CCPG1|p.K524Nfs*118|1|0.26|ENSG00000260916|chr15:55360201-55360201|T/-|frameshift_variant CCPG1|p.K524Nfs*118|1|0.26|ENSG00000260916|chr15:55360201-55360201|T/-|frameshift_variant CCPG1|p.K524Nfs*118|1|0.26|ENSG00000260916|chr15:55360201-55360201|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.27325439453125 3 415.272554 1242.79583 NaN NaN NaN NaN NaN NaN NaN 155.56 1 155.56 155.06 156.06 0 0 0 0 0.22588 1 31186 31186 0.69767 0 1 37887 434 25466 25482 37254 37254 0.18414556884044941 RISQDIIDY 9 Unmodified _RISQDIIDY_ 0 0 0 tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1 tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1 tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 374.90399169921875 3 374.864506 1121.57169 0.18372 6.8871E-05 -0.88659 -0.00033235 -0.70287 -0.00026348 374.8641653043948 47.717 0.9105 47.717 47.193 48.103 0 30 25 2 0 0 0 0.87262 1 8908 8908 8.7454 0 1 416110 37888 25926 25467 25483 37255 37255 0.0157652026375672 RISQDIIDY 9 Unmodified _RISQDIIDY_ 0 0 0 tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1 tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1 tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.864506 1121.57169 -0.3761 -0.00014098 -0.044479 -1.6674E-05 -0.42057 -0.00015766 374.86429634976656 50.543 0.17841 47.662 47.609 47.787 -2.8811 -0.027551 0.00084501 NaN 8.7454 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 430840 37889 25926 25467 25483 0.0157652026375672 RISTILEQY 9 Unmodified _RISTILEQY_ 0 0 0 REV__ENST00000448223.6_1_2:17846183-17846285:-|nuORF REV__ENST00000448223.6_1_2:17846183-17846285:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2118835449219 3 374.876634 1121.60807 -0.55351 -0.0002075 1.0573 0.00039636 0.50378 0.00018886 374.876800187671 59.812 0.52956 56.588 56.289 56.818 -3.2237 31 14 3 0 0 0 0.6797 1 11143 11143 7.609 0 1 1637200 + 37890 21778 25468 25484 37256 37256 0.05213397160468958 RISVIAESVR 10 Unmodified _RISVIAESVR_ 0 0 0 REV__ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant REV__ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.8788757324219 3 377.227779 1128.66151 0.22902 8.6392E-05 -0.37058 -0.00013979 -0.14156 -5.3401E-05 377.2276270750431 33.342 0.52547 31.195 30.902 31.427 -2.1468 36 14 4 0 0 0 1.1309 1 5755 5755 0.51642 0.50315 1 2186100 + 37891 12902 25469 25485 37257 37257 0.10232194662989968 RITRVKHFF 9 Unmodified _RITRVKHFF_ 0 0 0 REV__ENST00000493902.5_1_16:31044585-31047064:+|nuORF REV__ENST00000493902.5_1_16:31044585-31047064:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2938842773438 2 602.359099 1202.70365 NaN NaN NaN NaN NaN NaN NaN 130.44 1 125.66 125.16 126.16 -4.7725 0 0 0 0.19657 1 25103 25103 4.897 4.3117 1 + 37892 14886 25470 25486 37258 37258 0.11040214862032371 RITYTNKG 8 Unmodified _RITYTNKG_ 0 0 0 REV__tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1 REV__tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.1708068847656 3 318.178536 951.513779 NaN NaN NaN NaN NaN NaN NaN 40.946 1 38.457 37.957 38.957 -2.4896 0 0 0 0.21486 1 7341 7341 3.5965 0 1 + 37893 25048 25471 25487 37259 37259 0.036083031289990686 RIVKLLKQP 9 Unmodified _RIVKLLKQP_ 0 0 0 REV__EMG1|p.K160R|1|0.45|ENSG00000126749|chr12:6975236-6975236|A/G|missense_variant REV__EMG1|p.K160R|1|0.45|ENSG00000126749|chr12:6975236-6975236|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7853393554688 2 547.874051 1093.73355 NaN NaN NaN NaN NaN NaN NaN 166.78 1 161.87 161.37 162.37 -4.9046 0 0 0 0.19652 1 32715 32715 0.40827 0 1 + 37894 13809 25472 25488 37260 37260 0.19043153807365343 RIWEPTYTI 9 Unmodified _RIWEPTYTI_ 0 0 0 HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2527465820312 2 589.813856 1177.61316 0.47551 0.00028046 -0.35195 -0.00020759 0.12356 7.2878E-05 589.8136835466198 138.8 0.60307 134.15 133.91 134.52 -4.6439 33 16 3 0 0 0 0.11518 1 27408 27408 61.602 33.973 1 4194700 37895 1827 25473 25489 37261 37261 0.031457010230724336 RIWEPTYTI 9 Unmodified _RIWEPTYTI_ 0 0 0 HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2747192382812 2 589.813856 1177.61316 0.484 0.00028547 -0.074449 -4.3911E-05 0.40955 0.00024156 589.8138513394712 138.96 0.64302 134.01 133.78 134.42 -4.952 37 17 3 0 0 0 0.045725 1 26771 26771 72.968 40.182 1 3233800 37896 1827 25473 25489 37262 37262 0.031457010230724336 RIWEPTYTI 9 Unmodified _RIWEPTYTI_ 0 0 0 HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2720336914062 2 589.813856 1177.61316 0.25898 0.00015275 -0.52881 -0.0003119 -0.26983 -0.00015915 589.8137461455904 138.81 0.67125 133.96 133.68 134.35 -4.8492 29 18 2 0 0 0 0.19171 1 26744 26744 38.176 9.6887 1 2031200 37897 1827 25473 25489 37263 37263 0.031457010230724336 RIWHSGFGS 9 Unmodified _RIWHSGFGS_ 0 0 0 REV__ENST00000331457.8_1_22:31830005-31830233:+|nuORF REV__ENST00000331457.8_1_22:31830005-31830233:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6932983398438 2 523.761958 1045.50936 NaN NaN NaN NaN NaN NaN NaN 44.961 1 42.096 41.596 42.596 -2.8653 0 0 0 0.23508 1 8153 8153 13.042 0.80181 1 + 37898 20616 25474 25490 37264 37264 -0.011571612938951148 RIWQNSLGMH 10 Unmodified _RIWQNSLGMH_ 0 0 0 ENSG00000176160|ENST00000323777|HSF5;nc|ENSG00000176160|Q4G112-2|HSF5 ENSG00000176160|ENST00000323777|HSF5 ENSG00000176160|ENST00000323777|HSF5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7716064453125 2 621.314032 1240.61351 0.28982 0.00018007 -0.42903 -0.00026656 -0.13921 -8.6492E-05 621.3136997030688 133.92 0.96622 129.05 128.68 129.65 -4.8726 80 27 4 0 0 0 0.71778 1 25692 25692 9.3831 0.63772 1 29832000 37899 6452 25475 25491 37265 37265 0.0028279747130000032 RIYDHVEY 8 Unmodified _RIYDHVEY_ 0 0 0 REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7670288085938 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 170.32 1 165.53 165.03 166.03 -4.7898 0 0 0 0.21171 1 34558 34558 15.847 0 1 + 37900 19514 25476 25492 37266 37266 -0.023760180791896346 RIYEWDPC 8 Unmodified _RIYEWDPC_ 0 0 0 ENST00000375206.6_1_9:100008408-100053768:+|nuORF;ENST00000375204.2_1_9:100008408-100054866:+|nuORF;ENST00000527128.5_1_9:100008408-100053855:+|nuORF ENST00000375206.6_1_9:100008408-100053768:+|nuORF ENST00000375206.6_1_9:100008408-100053768:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1640625 3 361.163898 1080.46987 NaN NaN NaN NaN NaN NaN NaN 76.43 1 73.015 72.515 73.515 -3.4151 0 0 0 0.21486 1 14919 14919 1.6526 0 1 37901 9233 25477 25493 37267 37267 -0.06715049359650038 RIYKYIHKV 9 Unmodified _RIYKYIHKV_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 306.19073486328125 4 305.688205 1218.72371 0.60586 0.0001852 -0.58964 -0.00018025 0.016219 4.9579E-06 305.93878209307593 27.759 0.557 25.977 25.775 26.332 -1.7821 21 15 2 0 0 0 0.54058 1 4972 4972 12.241 7.3436 1 465920 37902 1253 25478 25494 37268 37268 0.12309965801955514 RIYKYIHKV 9 Unmodified _RIYKYIHKV_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 305.688205 1218.72371 0.21678 6.6266E-05 0.032109 9.8153E-06 0.24889 7.6082E-05 305.6880481335366 27.514 0.48718 25.759 25.443 25.93 -1.7552 -0.023411 -0.00012947 NaN 12.241 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 972590 37903 1253 25478 25494 0.12309965801955514 RIYKYIHKV 9 Unmodified _RIYKYIHKV_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 305.688205 1218.72371 -0.47721 -0.00014588 0.80684 0.00024664 0.32962 0.00010076 305.6883227696788 27.608 0.42679 25.612 25.432 25.859 -1.9962 -0.17071 0.00081783 NaN 12.241 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 776200 37904 1253 25478 25494 0.12309965801955514 RIYMDYENVP 10 Unmodified _RIYMDYENVP_ 0 0 0 REV__ENSG00000126870|ENST00000407559|DYNC2I1 REV__ENSG00000126870|ENST00000407559|DYNC2I1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.88848876953125 3 433.872784 1298.59652 NaN NaN NaN NaN NaN NaN NaN 138.95 1 134.31 133.81 134.81 -4.6439 0 0 0 0.22588 1 27438 27438 3.5871 0 1 + 37905 15870 25479 25495 37269 37269 -0.040831679251823516 RIYQIAKRR 9 Unmodified _RIYQIAKRR_ 0 0 0 ENSG00000150594|ENST00000280155|ADRA2A ENSG00000150594|ENST00000280155|ADRA2A ENSG00000150594|ENST00000280155|ADRA2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2808837890625 2 602.375281 1202.73601 NaN NaN NaN NaN NaN NaN NaN 135.31 1 130.48 129.98 130.98 -4.8307 0 0 0 0.19626 1 26050 26050 0.073264 0 1 37906 4828 25480 25496 37270 37270 0.14275002265003423 RKACPDPS 8 Unmodified _RKACPDPS_ 0 0 0 ENST00000395882.5_1_9:87426376-87426628:+|nuORF ENST00000395882.5_1_9:87426376-87426628:+|nuORF ENST00000395882.5_1_9:87426376-87426628:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2271728515625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 102.62 1 98.294 97.794 98.794 -4.3208 0 0 0 0.22934 1 19647 19647 0.62683 0.50396 1 37907 9436 25481 25497 37271 37271 -0.023875877026057424 RKACPDPS 8 Unmodified _RKACPDPS_ 0 0 0 ENST00000395882.5_1_9:87426376-87426628:+|nuORF ENST00000395882.5_1_9:87426376-87426628:+|nuORF ENST00000395882.5_1_9:87426376-87426628:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23175048828125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 102.72 1 98.402 97.902 98.902 -4.3208 0 0 0 0.22934 1 19667 19667 0.62683 0.37535 1 37908 9436 25481 25497 37272 37272 -0.023875877026057424 RKAKKKKRRRL 11 Unmodified _RKAKKKKRRRL_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.275634765625 3 490.010944 1467.011 NaN NaN NaN NaN NaN NaN NaN 165.18 1 165.18 164.68 165.68 0 0 0 0 0.23698 1 33494 33494 0.094841 0.011491 1 + 37909 22757 25482 25498 37273 37273 0.2961765946383821 RKEEIKKR 8 Unmodified _RKEEIKKR_ 0 0 0 REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7757568359375 2 543.840739 1085.66693 NaN NaN NaN NaN NaN NaN NaN 172.7 1 167.81 167.31 168.31 -4.881 0 0 0 0.23538 1 34295 34295 0.12286 0 1 + 37910 17933 25483 25499 37274 37274 0.12751918245453453 RKEKKVAC 8 Unmodified _RKEKKVAC_ 0 0 0 ENST00000454470.1_1_10:4285732-4285792:-|nuORF ENST00000454470.1_1_10:4285732-4285792:-|nuORF ENST00000454470.1_1_10:4285732-4285792:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.1903076171875 3 321.1919 960.55387 NaN NaN NaN NaN NaN NaN NaN 19.681 1 18.046 17.546 18.546 -1.6351 0 0 0 0.21486 1 2986 2986 0.45834 0 1 37911 10013 25484 25500 37275 37275 0.07201526527910573 RKEPPPSP 8 Unmodified _RKEPPPSP_ 0 0 0 REV__FASLG|p.K141Rfs*3|2|0.35|ENSG00000117560|chr1:172664355-172664355|A/-|frameshift_variant REV__FASLG|p.K141Rfs*3|2|0.35|ENSG00000117560|chr1:172664355-172664355|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74749755859375 2 454.253434 906.492316 0.23741 0.00010784 -0.00092382 -4.1965E-07 0.23648 0.00010742 454.25337201850186 36.239 1.8657 33.962 33.281 35.147 -2.2766 65 52 2 0 0 0 0.74718 1 6276 6276 32.117 0 1 489100 + 37912 23523 25485 25501 37276 37276 0.03532918100279403 RKERKRWKARR 11 Unmodified _RKERKRWKARR_ 0 0 0 REV__nc|ENSG00000100987|Q9NZR4-5|VSX1 REV__nc|ENSG00000100987|Q9NZR4-5|VSX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4019165039062 2 785.487291 1568.96003 NaN NaN NaN NaN NaN NaN NaN 167.36 1 162.41 161.91 162.91 -4.948 0 0 0 0.22632 1 32915 32915 0.00056442 0 1 + 37913 14754 25486 25502 37277 37277 0.19830710419000752 RKERLYPLRKY 11 Unmodified _RKERLYPLRKY_ 0 0 0 ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000373570.8_1_9:127620199-127620799:-|nuORF ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000373570.8_1_9:127620199-127620799:-|nuORF ENST00000487431.1_1_9:127620199-127623861:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20513916015625 4 381.230768 1520.89397 0.29296 0.00011169 -0.47044 -0.00017935 -0.17748 -6.7662E-05 381.2305492421807 30.155 0.62749 28.038 27.701 28.329 -2.1167 20 17 2 0 0 0 0.91309 1 5427 5427 10.527 8.4435 1 828670 37914 4057;9200 25487 25503 37278 37278 0.15435456733575847 RKERLYPLRKY 11 Unmodified _RKERLYPLRKY_ 0 0 0 ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000373570.8_1_9:127620199-127620799:-|nuORF ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000373570.8_1_9:127620199-127620799:-|nuORF ENST00000487431.1_1_9:127620199-127623861:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21112060546875 4 381.230768 1520.89397 0.343 0.00013076 -0.67385 -0.00025689 -0.33085 -0.00012613 381.4812755051014 29.895 0.455 28.003 27.752 28.207 -1.8928 14 12 2 0 0 0 0.66106 2 5099 5099;5101 1.1098 0.55911 1 456330 37915 4057;9200 25487 25503 37279;37280 37279 0.15435456733575847 RKFFHLWRRIY 11 Unmodified _RKFFHLWRRIY_ 0 0 0 ENST00000370008.3_1_1:109351697-109351763:+|nuORF ENST00000370008.3_1_1:109351697-109351763:+|nuORF ENST00000370008.3_1_1:109351697-109351763:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.277587890625 3 541.3124 1620.91537 NaN NaN NaN NaN NaN NaN NaN 63.564 1 63.564 63.064 64.064 0 0 0 0 0.22632 1 12224 12224 0.026206 0 1 37916 9131 25488 25504 37281 37281 0.12974886552956377 RKFFHLWRRIY 11 Unmodified _RKFFHLWRRIY_ 0 0 0 ENST00000370008.3_1_1:109351697-109351763:+|nuORF ENST00000370008.3_1_1:109351697-109351763:+|nuORF ENST00000370008.3_1_1:109351697-109351763:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2638549804688 3 541.3124 1620.91537 NaN NaN NaN NaN NaN NaN NaN 140.29 1 135.3 134.8 135.8 -4.9877 0 0 0 0.22632 1 27000 27000 0.026206 0 1 37917 9131 25488 25504 37282 37282 0.12974886552956377 RKFFHLWRRIY 11 Unmodified _RKFFHLWRRIY_ 0 0 0 ENST00000370008.3_1_1:109351697-109351763:+|nuORF ENST00000370008.3_1_1:109351697-109351763:+|nuORF ENST00000370008.3_1_1:109351697-109351763:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2640991210938 3 541.3124 1620.91537 NaN NaN NaN NaN NaN NaN NaN 168.99 1 164.12 163.62 164.62 -4.873 0 0 0 0.22632 1 33357 33357 0.094841 0.094277 1 37918 9131 25488 25504 37283 37283 0.12974886552956377 RKFGLMKKA 9 Unmodified _RKFGLMKKA_ 0 0 0 ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;MEF2D|p.Q182Pfs*20|1|0.31|ENSG00000116604|chr1:156479648-156479649|-/G|frameshift_variant;ENST00000558983.5_1_15:100173318-100211695:+|nuORF ENSG00000213999|ENST00000424583|MEF2B;ENSG00000116604|ENST00000348159|MEF2D ENSG00000116604|ENST00000348159|MEF2D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2088928222656 3 360.223311 1077.6481 NaN NaN NaN NaN NaN NaN NaN 33.987 1 31.67 31.17 32.17 -2.3175 0 0 0 0.19654 1 6229 6229 2.4985 1.169 1 37919 2936;7715 25489 25505 37284 37284 0.11238665350060728 RKFGLMKKA 9 Unmodified _RKFGLMKKA_ 0 0 0 ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;MEF2D|p.Q182Pfs*20|1|0.31|ENSG00000116604|chr1:156479648-156479649|-/G|frameshift_variant;ENST00000558983.5_1_15:100173318-100211695:+|nuORF ENSG00000213999|ENST00000424583|MEF2B;ENSG00000116604|ENST00000348159|MEF2D ENSG00000116604|ENST00000348159|MEF2D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2101745605469 3 360.223311 1077.6481 NaN NaN NaN NaN NaN NaN NaN 33.81 1 31.594 31.094 32.094 -2.2158 0 0 0 0.19654 1 5906 5906 0.96228 0.65524 1 37920 2936;7715 25489 25505 37285 37285 0.11238665350060728 RKFIFKDEERT 11 Unmodified _RKFIFKDEERT_ 0 0 0 ENSG00000071575|ENST00000155926|TRIB2 ENSG00000071575|ENST00000155926|TRIB2 ENSG00000071575|ENST00000155926|TRIB2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26568603515625 3 490.268414 1467.78341 NaN NaN NaN NaN NaN NaN NaN 61.531 1 61.531 61.031 62.031 0 0 0 0 0.22632 1 11803 11803 0.172 0.14579 1 37921 1452 25490 25506 37286 37286 0.06823191954708818 RKFNRRYRV 9 Unmodified _RKFNRRYRV_ 0 0 0 REV__ENSG00000203926|ENST00000370518|SPANXA2 REV__ENSG00000203926|ENST00000370518|SPANXA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.8830871582031 3 432.258295 1293.75306 0.3105 0.00013422 -0.35818 -0.00015483 -0.047677 -2.0609E-05 432.25817917183156 29.777 0.3821 27.884 27.752 28.134 -1.8928 14 10 2 0 0 0 0.65126 1 5105 5105 0.0033805 0 1 600910 + 37922 19243 25491 25507 37287 37287 0.11792922870813527 RKFVKRGLKL 10 Unmodified _RKFVKRGLKL_ 0 0 0 tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1 tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1 tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.763671875 2 622.919324 1243.8241 NaN NaN NaN NaN NaN NaN NaN 131.06 1 126.43 125.93 126.93 -4.6359 0 0 0 0.22588 1 25829 25829 0.40072 0 1 37923 26027 25492 25508 37288 37288 0.21193622855662397 RKFYLRKRK 9 Unmodified _RKFYLRKRK_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 431.8913879394531 3 432.278808 1293.81459 NaN NaN NaN NaN NaN NaN NaN 146.36 1 141.36 140.86 141.86 -5 0 0 0 0.23508 1 28321 28321 0.23584 0.076522 1 37924 8872 25493 25509 37289 37289 0.17943854570103213 RKGGGGGY 8 Unmodified _RKGGGGGY_ 0 0 0 REV__ENSG00000174992|ENST00000400752|ZG16 REV__ENSG00000174992|ENST00000400752|ZG16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.18878173828125 2 376.195919 750.377286 NaN NaN NaN NaN NaN NaN NaN 77.147 1 73.684 73.184 74.184 -3.4633 0 0 0 0.23711 1 15060 15060 0.62683 0 1 + 37925 18444 25494 25510 37290 37290 -0.00788766310859046 RKGHCVPPK 9 Unmodified _RKGHCVPPK_ 0 0 0 REV__nc|ENSG00000022267|Q13642|FHL1 REV__nc|ENSG00000022267|Q13642|FHL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.1861572265625 3 341.195644 1020.5651 NaN NaN NaN NaN NaN NaN NaN 110.4 1 110.4 109.9 110.9 0 0 0 0 0.23508 1 21714 21714 1.0715 0 1 + 37926 23930 25495 25511 37291 37291 0.05564348622056059 RKGKQVEV 8 Unmodified _RKGKQVEV_ 0 0 0 REV__ENSG00000118193|ENST00000367350|KIF14 REV__ENSG00000118193|ENST00000367350|KIF14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 474.2572937011719 2 472.287808 942.561064 0.14283 6.7457E-05 0.13514 6.3824E-05 0.27797 0.00013128 472.2877701595885 161.03 0.9924 155.8 155.4 156.39 -5.2298 77 27 4 0 0 0 8448 1 31286 31286 0.12286 0 1 23982000 + 37927 15542 25496 25512 37292 37292 0.0874858239999412 RKGKTKAK 8 Unmodified _RKGKTKAK_ 0 0 0 ENST00000464769.1_1_3:52874512-52877125:-|nuORF;ENSG00000213533|ENST00000355083|STIMATE ENST00000464769.1_1_3:52874512-52877125:-|nuORF ENST00000464769.1_1_3:52874512-52877125:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.52777099609375 3 306.206538 915.597784 NaN NaN NaN NaN NaN NaN NaN 72.565 1 69.027 68.527 69.527 -3.5385 0 0 0 0.23899 1 13759 13759 1.3295 0 1 37928 7697 25497 25513 37293 37293 0.13660879016549643 RKGKTKLT 8 Unmodified _RKGKTKLT_ 0 0 0 REV__ENST00000452690.1_1_X:40142836-40144956:+|nuORF REV__ENST00000452690.1_1_X:40142836-40144956:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.2119445800781 3 311.206426 930.597449 NaN NaN NaN NaN NaN NaN NaN 59.422 1 56.108 55.608 56.608 -3.3139 0 0 0 0.21486 1 11050 11050 0 0 1 + 37929 21821 25498 25514 37294 37294 0.12937459296676934 RKGVKGGK 8 Unmodified _RKGVKGGK_ 0 0 0 REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.2732849121094 2 415.271961 828.52937 NaN NaN NaN NaN NaN NaN NaN 4.2503 1 4.2503 3.7503 4.7503 0 0 0 0 0.21486 1 49 49 0.79363 0 1 + 37930 24753 25499 25515 37295 37295 0.10824634436710312 RKGVKGGK 8 Unmodified _RKGVKGGK_ 0 0 0 REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.2730712890625 2 415.271961 828.52937 NaN NaN NaN NaN NaN NaN NaN 5.9859 1 5.9859 5.4859 6.4859 0 0 0 0 0.21486 1 393 393 0.79363 0 1 + 37931 24753 25499 25515 37296 37296 0.10824634436710312 RKGVKGGK 8 Unmodified _RKGVKGGK_ 0 0 0 REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.27227783203125 2 415.271961 828.52937 NaN NaN NaN NaN NaN NaN NaN 7.1486 1 7.1486 6.6486 7.6486 0 0 0 0 0.21486 1 622 622 0.79363 0 1 + 37932 24753 25499 25515 37297 37297 0.10824634436710312 RKGVKGGK 8 Unmodified _RKGVKGGK_ 0 0 0 REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.2723388671875 2 415.271961 828.52937 NaN NaN NaN NaN NaN NaN NaN 4.6457 1 4.0194 3.5194 4.5194 -0.62626 0 0 0 0.21486 1 126 126 0.79363 0 1 + 37933 24753 25499 25515 37298 37298 0.10824634436710312 RKGVKGGK 8 Unmodified _RKGVKGGK_ 0 0 0 REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.27276611328125 2 415.271961 828.52937 NaN NaN NaN NaN NaN NaN NaN 7.6038 1 6.9247 6.4247 7.4247 -0.67913 0 0 0 0.21486 1 708 708 0.79363 0 1 + 37934 24753 25499 25515 37299 37299 0.10824634436710312 RKGVKGGK 8 Unmodified _RKGVKGGK_ 0 0 0 REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.27301025390625 2 415.271961 828.52937 NaN NaN NaN NaN NaN NaN NaN 179.25 1 174.46 173.96 174.96 -4.7898 0 0 0 0.21486 1 36676 36676 0.79363 0 1 + 37935 24753 25499 25515 37300 37300 0.10824634436710312 RKGVKGGK 8 Unmodified _RKGVKGGK_ 0 0 0 REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.27178955078125 2 415.271961 828.52937 NaN NaN NaN NaN NaN NaN NaN 179.82 1 175.03 174.53 175.53 -4.7898 0 0 0 0.21486 1 36787 36787 0.79363 0 1 + 37936 24753 25499 25515 37301 37301 0.10824634436710312 RKGVKGGK 8 Unmodified _RKGVKGGK_ 0 0 0 REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2725830078125 2 415.271961 828.52937 NaN NaN NaN NaN NaN NaN NaN 4.2091 1 3.1691 2.6691 3.6691 -1.04 0 0 0 0.21486 1 51 51 0.79363 0 1 + 37937 24753 25499 25515 37302 37302 0.10824634436710312 RKGVKGGK 8 Unmodified _RKGVKGGK_ 0 0 0 REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2726745605469 2 415.271961 828.52937 NaN NaN NaN NaN NaN NaN NaN 5.4765 1 4.4366 3.9366 4.9366 -1.04 0 0 0 0.21486 1 275 275 0.79363 0 1 + 37938 24753 25499 25515 37303 37303 0.10824634436710312 RKGVKGGK 8 Unmodified _RKGVKGGK_ 0 0 0 REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense REV__SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|35|3|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.2536315917969 2 415.271961 828.52937 NaN NaN NaN NaN NaN NaN NaN 6.0114 1 5.0026 4.5026 5.5026 -1.0089 0 0 0 0.21486 1 341 341 0.79363 0 1 + 37939 24753 25499 25515 37304 37304 0.10824634436710312 RKHAIKAE 8 Unmodified _RKHAIKAE_ 0 0 0 REV__PYROXD1|p.K278Efs*2|1|0.05|ENSG00000121350|chr12:21461105-21461106|-/GAAT|frameshift_variant REV__PYROXD1|p.K278Efs*2|1|0.05|ENSG00000121350|chr12:21461105-21461106|-/GAAT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.21429443359375 3 318.194409 951.561398 -0.61428 -0.00019546 1.1887 0.00037825 0.57447 0.00018279 318.19484703904124 14.788 0.13653 13.615 13.495 13.631 -1.173 5 3 2 0 0 0 8448 1 2023 2023 1.3295 0 1 173440 + 37940 15653 25500 25516 37305 37305 0.08368002119846096 RKHIKSLI 8 Unmodified _RKHIKSLI_ 0 0 0 ENSG00000119707|ENST00000261973|RBM25 ENSG00000119707|ENST00000261973|RBM25 ENSG00000119707|ENST00000261973|RBM25 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.2212829589844 3 332.222188 993.644734 NaN NaN NaN NaN NaN NaN NaN 114.65 1 114.65 114.15 115.15 0 0 0 0 0.21486 1 22554 22554 0.40072 0 1 37941 3096 25501 25517 37306 37306 0.14765738567689368 RKHIKSLI 8 Unmodified _RKHIKSLI_ 0 0 0 ENSG00000119707|ENST00000261973|RBM25 ENSG00000119707|ENST00000261973|RBM25 ENSG00000119707|ENST00000261973|RBM25 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.2222900390625 3 332.222188 993.644734 NaN NaN NaN NaN NaN NaN NaN 116.89 1 116.89 116.39 117.39 0 0 0 0 0.21486 1 23021 23021 0.40072 0 1 37942 3096 25501 25517 37307 37307 0.14765738567689368 RKHIKSLI 8 Unmodified _RKHIKSLI_ 0 0 0 ENSG00000119707|ENST00000261973|RBM25 ENSG00000119707|ENST00000261973|RBM25 ENSG00000119707|ENST00000261973|RBM25 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.221923828125 3 332.222188 993.644734 NaN NaN NaN NaN NaN NaN NaN 117.92 1 113.51 113.01 114.01 -4.4088 0 0 0 0.21486 1 22693 22693 0.40072 0 1 37943 3096 25501 25517 37308 37308 0.14765738567689368 RKHREMHYKQI 11 Unmodified _RKHREMHYKQI_ 0 0 0 REV__ZNF148|p.K284Nfs*2|1|0.43|ENSG00000163848|chr3:125233874-125233874|T/-|frameshift_variant;REV__ENSG00000162702|ENST00000367353|ZNF281 REV__ENSG00000162702|ENST00000367353|ZNF281 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 509.2770080566406 3 509.277138 1524.80958 NaN NaN NaN NaN NaN NaN NaN 55.416 1 52.278 51.778 52.778 -3.1377 0 0 0 0.22632 1 10287 10287 1.4551 1.4289 1 + 37944 17622;17521 25502 25518 37309 37309 0.06817182645204412 RKHYSRRWPNR 11 Unmodified _RKHYSRRWPNR_ 0 0 0 REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 389.34552001953125 4 389.717088 1554.83924 -1.0602 -0.00041319 0.59136 0.00023046 -0.46887 -0.00018273 389.7173178577215 23.348 0.37521 21.56 21.324 21.699 -1.7886 19 10 2 0 0 0 0.96227 1 3779 3779 0.08335 0 1 742960 + 37945 18574 25503 25519 37310 37310 0.0840188270553881 RKIAKLLKPQ 10 Unmodified _RKIAKLLKPQ_ 0 0 0 ENSG00000162444|ENST00000294435|RBP7;ENST00000315901.4_1_1:10057339-10075887:+|nuORF ENSG00000162444|ENST00000294435|RBP7 ENSG00000162444|ENST00000294435|RBP7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 597.9046630859375 2 597.905882 1193.79721 NaN NaN NaN NaN NaN NaN NaN 174.99 1 170.1 169.6 170.6 -4.8916 0 0 0 2.8426 1 34864 34864 0.043787 0 1 37946 5335 25504 25520 37311 37311 0.20806514244441132 RKIKKKRQ 8 Unmodified _RKIKKKRQ_ 0 0 0 REV__nc|ENSG00000198055|P43250-2|GRK6 REV__nc|ENSG00000198055|P43250-2|GRK6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.514404296875 3 362.25237 1083.73528 NaN NaN NaN NaN NaN NaN NaN 122.12 1 117.58 117.08 118.08 -4.5476 0 0 0 0.2396 1 24074 24074 0.12286 0 1 + 37947 24233 25505 25521 37312 37312 0.19676207615975727 RKINKHSVL 9 Unmodified _RKINKHSVL_ 0 0 0 ENST00000519685.5_1_8:22875776-22875938:+|nuORF ENST00000519685.5_1_8:22875776-22875938:+|nuORF ENST00000519685.5_1_8:22875776-22875938:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7869262695312 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 10.576 1 9.5099 9.0099 10.01 -1.0664 0 0 0 0.19627 1 1152 1152 0.073264 0 1 37948 10822 25506 25522 37313 37313 0.12892222108098395 RKIREFEEEFT 11 Unmodified _RKIREFEEEFT_ 0 0 0 REV__tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1 REV__tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.38134765625 2 742.380623 1482.74669 NaN NaN NaN NaN NaN NaN NaN 135 1 130.11 129.61 130.61 -4.8951 0 0 0 0.22632 1 25931 25931 0.50596 0.50539 1 + 37949 24946 25507 25523 37314 37314 0.024628953381352403 RKKAKKAKK 9 Unmodified _RKKAKKAKK_ 0 0 0 ENSG00000100425|ENST00000404760|BRD1;nc|ENSG00000100425|O95696|BRD1;ENST00000494833.1_1_22:50214627-50216774:-|nuORF ENSG00000100425|ENST00000404760|BRD1 ENSG00000100425|ENST00000404760|BRD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.782958984375 2 543.385117 1084.75568 NaN NaN NaN NaN NaN NaN NaN 53.504 1 53.504 53.004 54.004 0 0 0 0 0.23508 1 10190 10190 0.52476 0 1 37950 1977 25508 25524 37315 37315 0.21669378275782947 RKKFIALA 8 Unmodified _RKKFIALA_ 0 0 0 REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.8860168457031 3 316.2114 945.612371 NaN NaN NaN NaN NaN NaN NaN 74.068 1 70.392 69.892 70.892 -3.6764 0 0 0 0.2386 1 14007 14007 0.68139 0 1 + 37951 13707 25509 25525 37316 37316 0.13738951164680202 RKKGDVPPPA 10 Unmodified _RKKGDVPPPA_ 0 0 0 ENSG00000275954|ENST00000620210|TBC1D3F;nc|ENSG00000275954|A6NER0|TBC1D3F ENSG00000275954|ENST00000620210|TBC1D3F ENSG00000275954|ENST00000620210|TBC1D3F MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2853393554688 2 532.81419 1063.61383 0.58432 0.00031134 0.27801 0.00014813 0.86233 0.00045946 532.8140188942866 74.18 1.1383 70.504 70.07 71.208 -3.6764 44 32 2 0 0 0 0.71778 1 14120 14120 9.3831 0 1 2711100 37952 8027 25510 25526 37317 37317 0.0845654046281652 RKKGKKTL 8 Unmodified _RKKGKKTL_ 0 0 0 CCDC178|p.K628Q|1|0.16|ENSG00000166960|chr18:33223156-33223156|T/G|missense_variant;CCDC178|p.Y665Mfs*4|2|0.25|ENSG00000166960|chr18:33215635-33215635|A/-|frameshift_variant;nc|ENSG00000166960|Q5BJE1-3|CCDC178;nc|ENSG00000166960|Q5BJE1-4|CCDC178;ENSG00000166960|ENST00000383096|CCDC178 CCDC178|p.K628Q|1|0.16|ENSG00000166960|chr18:33223156-33223156|T/G|missense_variant CCDC178|p.K628Q|1|0.16|ENSG00000166960|chr18:33223156-33223156|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.2221984863281 3 320.222188 957.644734 NaN NaN NaN NaN NaN NaN NaN 176.94 1 172.04 171.54 172.54 -4.9008 0 0 0 0.21486 1 35283 35283 0.40072 0 1 37953 416 25511 25527 37318 37318 0.16421738567692046 RKKILYIL 8 Unmodified _RKKILYIL_ 0 0 0 REV__nc|ENSG00000083454|Q93086-2|P2RX5 REV__nc|ENSG00000083454|Q93086-2|P2RX5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6912841796875 2 523.85787 1045.70119 NaN NaN NaN NaN NaN NaN NaN 135.85 1 131.21 130.71 131.71 -4.6399 0 0 0 0.2396 1 26801 26801 0.13829 0 1 + 37954 14451 25512 25528 37319 37319 0.18016366404367545 RKKKDLKIRKK 11 Unmodified _RKKKDLKIRKK_ 0 0 0 ENSG00000189171|ENST00000476133|S100A13 ENSG00000189171|ENST00000476133|S100A13 ENSG00000189171|ENST00000476133|S100A13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24505615234375 3 480.999822 1439.97764 NaN NaN NaN NaN NaN NaN NaN 141.91 1 137.04 136.54 137.54 -4.8678 0 0 0 0.22632 1 27382 27382 0.0072825 0.0067181 1 37955 7219 25513 25529 37320 37320 0.27524612901265755 RKKKGMYRKA 10 Unmodified _RKKKGMYRKA_ 0 0 0 ENSG00000171813|ENST00000305233|PWWP2B ENSG00000171813|ENST00000305233|PWWP2B ENSG00000171813|ENST00000305233|PWWP2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.18548583984375 4 317.196034 1264.75503 -0.72949 -0.00023139 1.0273 0.00032587 0.29784 9.4475E-05 317.4471500051954 107.56 1.2856 103.24 102.61 103.9 -4.32 66 36 3 0 0 0 0.76781 1 21303 21303 0.13989 0 1 2642300 37956 6175 25514 25530 37321 37321 0.13324215564421138 RKKKHKKK 8 Unmodified _RKKKHKKK_ 0 0 0 REV__ENSG00000185088|ENST00000330964|RPS27L REV__ENSG00000185088|ENST00000330964|RPS27L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.27685546875 2 540.877459 1079.74037 NaN NaN NaN NaN NaN NaN NaN 165.57 1 160.59 160.09 161.09 -4.9811 0 0 0 0.2396 1 32372 32372 0.62683 0 1 + 37957 18941 25515 25531 37322 37322 0.20368511478591245 RKKKHRRRS 9 Unmodified _RKKKHRRRS_ 0 0 0 ENST00000468344.5_1_3:157827960-157854567:+|nuORF;ENST00000471911.5_1_3:157827960-158187155:+|nuORF;nc|ENSG00000174891|Q96IZ7-2|RSRC1;ENSG00000174891|ENST00000611884|RSRC1 ENST00000468344.5_1_3:157827960-157854567:+|nuORF ENST00000468344.5_1_3:157827960-157854567:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 418.0334167480469 3 417.937556 1250.79084 NaN NaN NaN NaN NaN NaN NaN 7.5264 1 6.4818 5.9818 6.9818 -1.0446 0 0 0 0.23508 1 648 648 0.20686 0 1 37958 6376 25516 25532 37323 37323 0.17547433856316275 RKKKKEKH 8 Unmodified _RKKKKEKH_ 0 0 0 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant;F5|p.G1754Efs*13|1|0.41|ENSG00000198734|chr1:169529768-169529768|T/-|frameshift_variant;ENSG00000198734|ENST00000367797|F5 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2632446289062 2 541.351274 1080.688 NaN NaN NaN NaN NaN NaN NaN 102.57 1 98.382 97.882 98.882 -4.1861 0 0 0 0.21486 1 20160 20160 4.756 0 1 37959 7482 25517 25533 37324 37324 0.15087928344996726 RKKKKIPKN 9 Unmodified _RKKKKIPKN_ 0 0 0 ENST00000463783.1_1_3:196665854-196666076:-|nuORF ENST00000463783.1_1_3:196665854-196666076:-|nuORF ENST00000463783.1_1_3:196665854-196666076:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 570.3409423828125 2 570.3904 1138.76625 0.19897 0.00011349 2.623 0.0014961 2.8219 0.0016096 570.8925049580056 166.8 0.13708 161.86 161.73 161.87 -4.948 6 3 2 0 0 0 0.6215 1 32731 32731 0.40827 0 1 6293700 37960 10104 25518 25534 37325 37325 0.20241360930231167 RKKKKKFK 8 Unmodified _RKKKKKFK_ 0 0 0 ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 364.2563171386719 3 364.257232 1089.74987 NaN NaN NaN NaN NaN NaN NaN 5.6308 1 5.0046 4.5046 5.5046 -0.62626 0 0 0 0.21486 1 320 320 0 0 1 37961 8121 25519 25535 37326 37326 0.2085827976411565 RKKKKKFK 8 Unmodified _RKKKKKFK_ 0 0 0 ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 364.25616455078125 3 364.257232 1089.74987 NaN NaN NaN NaN NaN NaN NaN 6.1119 1 5.4857 4.9857 5.9857 -0.62626 0 0 0 0.21486 1 416 416 0 0 1 37962 8121 25519 25535 37327 37327 0.2085827976411565 RKKKKKFK 8 Unmodified _RKKKKKFK_ 0 0 0 ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 364.25616455078125 3 364.257232 1089.74987 NaN NaN NaN NaN NaN NaN NaN 7.3103 1 6.6311 6.1311 7.1311 -0.67913 0 0 0 0.21486 1 651 651 0 0 1 37963 8121 25519 25535 37328 37328 0.2085827976411565 RKKKKKFK 8 Unmodified _RKKKKKFK_ 0 0 0 ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 364.2566833496094 3 364.257232 1089.74987 NaN NaN NaN NaN NaN NaN NaN 6.6357 1 5.6209 5.1209 6.1209 -1.0148 0 0 0 0.21486 1 448 448 0 0 1 37964 8121 25519 25535 37329 37329 0.2085827976411565 RKKKKKKKKKL 11 Unmodified _RKKKKKKKKKL_ 0 0 0 REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2489013671875 3 481.024079 1440.05041 NaN NaN NaN NaN NaN NaN NaN 132.95 1 132.95 132.45 133.45 0 0 0 0 0.22632 1 26293 26293 0 0 1 + 37965 21111 25520 25536 37330 37330 0.3479836669471297 RKKKKKKKKKL 11 Unmodified _RKKKKKKKKKL_ 0 0 0 REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2489013671875 3 481.024079 1440.05041 NaN NaN NaN NaN NaN NaN NaN 132.98 1 132.98 132.48 133.48 0 0 0 0 0.23698 1 26299 26299 0 0 1 + 37966 21111 25520 25536 37331 37331 0.3479836669471297 RKKKKKKKKRK 11 Unmodified _RKKKKKKKKRK_ 0 0 0 REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3681030273438 2 742.541003 1483.06745 NaN NaN NaN NaN NaN NaN NaN 143.72 1 139.06 138.56 139.56 -4.656 0 0 0 0.23698 1 28438 28438 0 0 1 + 37967 22093;21697 25521 25537 37332 37332 0.34524287300496326 RKKKKKKKKRK 11 Unmodified _RKKKKKKKKRK_ 0 0 0 REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3759765625 2 742.541003 1483.06745 NaN NaN NaN NaN NaN NaN NaN 143.74 1 139.08 138.58 139.58 -4.656 0 0 0 0.22632 1 28444 28444 0 0 1 + 37968 22093;21697 25521 25537 37333 37333 0.34524287300496326 RKKKKKKKKRK 11 Unmodified _RKKKKKKKKRK_ 0 0 0 REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3984985351562 2 742.541003 1483.06745 NaN NaN NaN NaN NaN NaN NaN 143.77 1 139.11 138.61 139.61 -4.656 0 0 0 0.23698 1 28448 28448 0 0 1 + 37969 22093;21697 25521 25537 37334 37334 0.34524287300496326 RKKKKKKKKRK 11 Unmodified _RKKKKKKKKRK_ 0 0 0 REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4033813476562 2 742.541003 1483.06745 NaN NaN NaN NaN NaN NaN NaN 166.83 1 161.88 161.38 162.38 -4.948 0 0 0 0.23698 1 32749 32749 0 0 1 + 37970 22093;21697 25521 25537 37335 37335 0.34524287300496326 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 ENSG00000177679|ENST00000611745|SRRM3;nc|ENSG00000177679|A6NNA2|SRRM3;SRRM3|p.R210H|2|0.27|ENSG00000177679|chr7:76261405-76261405|G/A|missense_variant ENSG00000177679|ENST00000611745|SRRM3 ENSG00000177679|ENST00000611745|SRRM3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.21221923828125 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 11.661 1 11.661 11.161 12.161 0 0 0 0 0.19635 1 1564 1564 0 0 1 37971 6529 25522 25538 37336 37336 0.22265647447261472 RKKKLPFVH 9 Unmodified _RKKKLPFVH_ 0 0 0 ENST00000394196.8_1_15:93570117-93570240:+|nuORF ENST00000394196.8_1_15:93570117-93570240:+|nuORF ENST00000394196.8_1_15:93570117-93570240:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 384.528564453125 3 384.916987 1151.72913 -0.3307 -0.00012729 -1.5779 -0.00060736 -1.9086 -0.00073465 384.91640755506404 72.929 0.46602 69.618 69.455 69.921 -3.3107 14 12 2 0 0 0 0.6226 1 14199 14199 1.2148 1.0749 1 1244200 37972 9406 25523 25539 37337 37337 0.159336893844511 RKKKRRKVPKK 11 Unmodified _RKKKRRKVPKK_ 0 0 0 REV__nc|ENSG00000123737|Q06265-3|EXOSC9 REV__nc|ENSG00000123737|Q06265-3|EXOSC9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 726.5399169921875 2 726.509703 1451.00485 NaN NaN NaN NaN NaN NaN NaN 177.52 1 172.65 172.15 173.15 -4.8686 0 0 0 0.22632 1 35328 35328 0.172 0.172 1 + 37973 15742 25524 25540 37338 37338 0.2973914123231225 RKKKSKIPP 9 Unmodified _RKKKSKIPP_ 0 0 0 REV__RIN2|p.I627Sfs*4|2|0.25|ENSG00000132669|chr20:19975750-19975750|C/-|frameshift_variant REV__RIN2|p.I627Sfs*4|2|0.25|ENSG00000132669|chr20:19975750-19975750|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2741088867188 2 541.36385 1080.71315 NaN NaN NaN NaN NaN NaN NaN 87.325 1 87.325 86.825 87.825 0 0 0 0 0.19626 1 17046 17046 0.0033805 0 1 + 37974 16127 25525 25541 37339 37339 0.17601983147574174 RKKLIGKK 8 Unmodified _RKKLIGKK_ 0 0 0 SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant;ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 485.84912109375 2 485.847836 969.681119 NaN NaN NaN NaN NaN NaN NaN 10.357 1 9.2902 8.7902 9.7902 -1.0664 0 0 0 0.21486 1 1116 1116 0 0 1 37975 7337 25526 25542 37340 37340 0.19506615464433708 RKKLILAKKF 10 Unmodified _RKKLILAKKF_ 0 0 0 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7621459960938 2 622.9319 1243.84925 NaN NaN NaN NaN NaN NaN NaN 115.16 1 115.16 114.66 115.66 0 0 0 0 2.8426 1 22663 22663 0 0 1 37976 7943 25527 25543 37341 37341 0.23707677658217108 RKKLILAKKF 10 Unmodified _RKKLILAKKF_ 0 0 0 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7650146484375 2 622.9319 1243.84925 NaN NaN NaN NaN NaN NaN NaN 144.1 1 144.1 143.6 144.6 0 0 0 0 2.8426 1 28778 28778 0 0 1 37977 7943 25527 25543 37342 37342 0.23707677658217108 RKKLKKKA 8 Unmodified _RKKLKKKA_ 0 0 0 REV__ENST00000502422.5_1_5:138651717-138665081:+|nuORF REV__ENST00000502422.5_1_5:138651717-138665081:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.9156494140625 3 333.909833 998.707669 NaN NaN NaN NaN NaN NaN NaN 10.803 1 9.8987 9.3987 10.399 -0.90401 0 0 0 0.21486 1 1384 1384 0 0 1 + 37978 22436 25528 25544 37343 37343 0.20826304355750835 RKKLKKKA 8 Unmodified _RKKLKKKA_ 0 0 0 REV__ENST00000502422.5_1_5:138651717-138665081:+|nuORF REV__ENST00000502422.5_1_5:138651717-138665081:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.0348205566406 3 333.909833 998.707669 NaN NaN NaN NaN NaN NaN NaN 13.956 1 12.842 12.342 13.342 -1.1142 0 0 0 0.21486 1 2059 2059 0 0 1 + 37979 22436 25528 25544 37344 37344 0.20826304355750835 RKKLKKKA 8 Unmodified _RKKLKKKA_ 0 0 0 REV__ENST00000502422.5_1_5:138651717-138665081:+|nuORF REV__ENST00000502422.5_1_5:138651717-138665081:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.9205322265625 3 333.909833 998.707669 NaN NaN NaN NaN NaN NaN NaN 10.128 1 9.0345 8.5345 9.5345 -1.0936 0 0 0 0.21486 1 1133 1133 0 0 1 + 37980 22436 25528 25544 37345 37345 0.20826304355750835 RKKLKKKA 8 Unmodified _RKKLKKKA_ 0 0 0 REV__ENST00000502422.5_1_5:138651717-138665081:+|nuORF REV__ENST00000502422.5_1_5:138651717-138665081:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.8914794921875 3 333.909833 998.707669 NaN NaN NaN NaN NaN NaN NaN 10.528 1 9.4339 8.9339 9.9339 -1.0936 0 0 0 0.21486 1 1202 1202 0 0 1 + 37981 22436 25528 25544 37346 37346 0.20826304355750835 RKKLLDVS 8 Unmodified _RKKLLDVS_ 0 0 0 REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1 REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.13934326171875 3 320.206315 957.597115 NaN NaN NaN NaN NaN NaN NaN 179.38 1 174.51 174.01 175.01 -4.868 0 0 0 0.21486 1 35727 35727 0.40072 0 1 + 37982 15551 25529 25545 37347 37347 0.11662039576856387 RKKLQLYQAI 10 Unmodified _RKKLQLYQAI_ 0 0 0 ENST00000427323.5_1_3:38390119-38397444:+|nuORF ENST00000427323.5_1_3:38390119-38397444:+|nuORF ENST00000427323.5_1_3:38390119-38397444:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7664184570312 2 630.892972 1259.77139 NaN NaN NaN NaN NaN NaN NaN 135.07 1 135.07 134.57 135.57 0 0 0 0 2.8426 1 26749 26749 3.8763 3.6109 1 37983 9741 25530 25546 37348 37348 0.151896200021838 RKKNKPVIL 9 Unmodified _RKKNKPVIL_ 0 0 0 tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1 tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1 tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.78564453125 2 548.371675 1094.7288 0.34416 0.00018873 -2.9863 -0.0016376 -2.6421 -0.0014489 548.8723249348309 157.73 0.17165 152.94 152.88 153.05 -4.7885 6 4 2 0 0 0 0.64439 1 31368 31368 0.20686 0 1 777930 37984 26362 25531 25547 37349 37349 0.18522269664595115 RKKPILIGPK 10 Unmodified _RKKPILIGPK_ 0 0 0 REV__ENST00000244496.5_1_6:42997153-42997255:+|nuORF REV__ENST00000244496.5_1_6:42997153-42997255:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 575.268798828125 2 575.395151 1148.77575 NaN NaN NaN NaN NaN NaN NaN 174.07 1 169.18 168.68 169.68 -4.8916 0 0 0 2.8426 1 34637 34637 0.69767 0 1 + 37985 20097 25532 25548 37350 37350 0.20731129215755573 RKKRKKDFQHL 11 Unmodified _RKKRKKDFQHL_ 0 0 0 TTF1|p.K279Rfs*144|2|0.29|ENSG00000125482|chr9:132401986-132401986|T/-|frameshift_variant;TTF1|p.K167Rfs*101|1|0.09|ENSG00000125482|chr9:132402322-132402322|T/-|frameshift_variant;TTF1|p.K337Efs*9|1|0.32|ENSG00000125482|chr9:132401814-132401815|-/T|frameshift_variant;ENSG00000125482|ENST00000334270|TTF1 TTF1|p.K279Rfs*144|2|0.29|ENSG00000125482|chr9:132401986-132401986|T/-|frameshift_variant;ENSG00000125482|ENST00000334270|TTF1 TTF1|p.K279Rfs*144|2|0.29|ENSG00000125482|chr9:132401986-132401986|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3801879882812 2 742.452051 1482.88955 NaN NaN NaN NaN NaN NaN NaN 173.42 1 168.53 168.03 169.03 -4.8977 0 0 0 0.22632 1 34433 34433 1.4551 1.4289 1 37986 26534;3362 25533 25549 37351 37351 0.1674199231069906 RKKRKKWMRTF 11 Unmodified _RKKRKKWMRTF_ 0 0 0 REV__RASAL2|p.E190Gfs*70|1|0.1|ENSG00000075391|chr1:178442759-178442760|-/GTCTTGCTGGTTGTACGAGCAAAGAGGGTATCATC|frameshift_variant REV__RASAL2|p.E190Gfs*70|1|0.1|ENSG00000075391|chr1:178442759-178442760|-/GTCTTGCTGGTTGTACGAGCAAAGAGGGTATCATC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2732543945312 3 522.317156 1563.92964 0.43596 0.00022771 1.5415 0.00080517 1.9775 0.0010329 522.3192333456723 119.81 0.20902 115.34 115.19 115.4 -4.467 8 5 2 0 0 0 0.66298 1 23050 23050 0.026206 0.026206 1 506220 + 37987 24549 25534 25550 37352 37352 0.17023215709582473 RKKRKKWMRTF 11 Unmodified _RKKRKKWMRTF_ 0 0 0 REV__RASAL2|p.E190Gfs*70|1|0.1|ENSG00000075391|chr1:178442759-178442760|-/GTCTTGCTGGTTGTACGAGCAAAGAGGGTATCATC|frameshift_variant REV__RASAL2|p.E190Gfs*70|1|0.1|ENSG00000075391|chr1:178442759-178442760|-/GTCTTGCTGGTTGTACGAGCAAAGAGGGTATCATC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2682495117188 3 522.317156 1563.92964 NaN NaN NaN NaN NaN NaN NaN 152.66 1 147.46 146.96 147.96 -5.2057 0 0 0 0.22632 1 29587 29587 0.094841 0.068635 1 + 37988 24549 25534 25550 37353 37353 0.17023215709582473 RKKRKTKRRIL 11 Unmodified _RKKRKTKRRIL_ 0 0 0 ENST00000415149.6_1_3:107429416-107435478:+|nuORF ENST00000415149.6_1_3:107429416-107435478:+|nuORF ENST00000415149.6_1_3:107429416-107435478:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 494.77191162109375 3 495.010832 1482.01067 NaN NaN NaN NaN NaN NaN NaN 157.17 1 152.38 151.88 152.88 -4.7885 0 0 0 0.22632 1 31257 31257 0.00056442 0.00056442 1 37989 9609 25535 25551 37354 37354 0.28894239744022343 RKKRKTKRRIL 11 Unmodified _RKKRKTKRRIL_ 0 0 0 ENST00000415149.6_1_3:107429416-107435478:+|nuORF ENST00000415149.6_1_3:107429416-107435478:+|nuORF ENST00000415149.6_1_3:107429416-107435478:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3902587890625 2 742.01261 1482.01067 NaN NaN NaN NaN NaN NaN NaN 151.69 1 146.51 146.01 147.01 -5.1759 0 0 0 0.22632 1 29397 29397 0 0 1 37990 9609 25535 25551 37355 37355 0.28894239744022343 RKKRLHKRKKR 11 Unmodified _RKKRLHKRKKR_ 0 0 0 REV__DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant REV__DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.0201416015625 3 512.01821 1533.0328 NaN NaN NaN NaN NaN NaN NaN 177.32 1 177.32 176.82 177.82 0 0 0 0 0.22632 1 36731 36731 0 0 1 + 37991 13675 25536 25552 37356 37356 0.2876046421240517 RKKRRRSRLVL 11 Unmodified _RKKRRRSRLVL_ 0 0 0 ENSG00000198113|ENST00000357503|TOR4A ENSG00000198113|ENST00000357503|TOR4A ENSG00000198113|ENST00000357503|TOR4A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.265625 3 489.998815 1466.97462 NaN NaN NaN NaN NaN NaN NaN 135.01 1 135.01 134.51 135.51 0 0 0 0 0.22632 1 26737 26737 0 0 1 37992 7432 25537 25553 37357 37357 0.25980782567171445 RKKRRRSRLVL 11 Unmodified _RKKRRRSRLVL_ 0 0 0 ENSG00000198113|ENST00000357503|TOR4A ENSG00000198113|ENST00000357503|TOR4A ENSG00000198113|ENST00000357503|TOR4A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 734.6844482421875 2 734.494585 1466.97462 NaN NaN NaN NaN NaN NaN NaN 172.72 1 167.93 167.43 168.43 -4.7898 0 0 0 0.23698 1 35198 35198 0 0 1 37993 7432 25537 25553 37358 37358 0.25980782567171445 RKKTRKRRRRK 11 Unmodified _RKKTRKRRRRK_ 0 0 0 ENST00000361675.6_2_7:134618055-134618145:+|nuORF ENST00000361675.6_2_7:134618055-134618145:+|nuORF ENST00000361675.6_2_7:134618055-134618145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.689697265625 3 523.688864 1568.04476 NaN NaN NaN NaN NaN NaN NaN 66.532 1 63.036 62.536 63.536 -3.4965 0 0 0 0.22632 1 12471 12471 0.094841 0 1 37994 9031 25538 25554 37359 37359 0.2834608095558906 RKKYVISEE 9 Unmodified _RKKYVISEE_ 0 0 0 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3214721679688 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 121.99 1 117.44 116.94 117.94 -4.5476 0 0 0 0.19632 1 24043 24043 0.073264 0 1 37995 26232 25539 25555 37360 37360 0.06533086051808823 RKKYVISEE 9 Unmodified _RKKYVISEE_ 0 0 0 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3190307617188 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 163.26 1 158.21 157.71 158.71 -5.0446 0 0 0 0.19652 1 31760 31760 0.073264 0 1 37996 26232 25539 25555 37361 37361 0.06533086051808823 RKKYVISEE 9 Unmodified _RKKYVISEE_ 0 0 0 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3283081054688 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 120.88 1 116.41 115.91 116.91 -4.467 0 0 0 0.1963 1 23277 23277 0.073264 0 1 37997 26232 25539 25555 37362 37362 0.06533086051808823 RKKYVISEE 9 Unmodified _RKKYVISEE_ 0 0 0 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.317626953125 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 139.61 1 134.76 134.26 135.26 -4.8492 0 0 0 0.19632 1 26919 26919 0.073264 0 1 37998 26232 25539 25555 37363 37363 0.06533086051808823 RKKYVISEE 9 Unmodified _RKKYVISEE_ 0 0 0 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3258056640625 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 141.67 1 136.8 136.3 137.3 -4.8678 0 0 0 0.19652 1 27337 27337 0.12781 0 1 37999 26232 25539 25555 37364 37364 0.06533086051808823 RKKYYIRWKHY 11 Unmodified _RKKYYIRWKHY_ 0 0 0 REV__nc|ENSG00000009950|Q9NP71-5|MLXIPL REV__nc|ENSG00000009950|Q9NP71-5|MLXIPL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7796630859375 3 547.643927 1639.90995 0.14957 8.1911E-05 0.49456 0.00027084 0.64413 0.00035275 547.6441023297577 148.87 0.13846 143.71 143.61 143.75 -5.1557 5 3 2 0 0 0 0.89134 1 28812 28812 0.026206 0.026206 1 3807900 + 38000 13914 25540 25556 37365 37365 0.1155916297047952 RKLFFKKK 8 Unmodified _RKLFFKKK_ 0 0 0 ENST00000303221.9_1_5:49694656-49694779:-|nuORF ENST00000303221.9_1_5:49694656-49694779:-|nuORF ENST00000303221.9_1_5:49694656-49694779:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7791748046875 2 547.863486 1093.71242 0.2374 0.00013006 -0.83579 -0.0004579 -0.59839 -0.00032784 547.8633464267554 141.53 0.14088 136.88 136.81 136.95 -4.6493 5 3 2 0 0 0 0.89967 1 27957 27957 0.0082765 0 1 2334300 38001 8583 25541 25557 37366 37366 0.16931188498483607 RKLFKKKI 8 Unmodified _RKLFKKKI_ 0 0 0 REV__nc|ENSG00000181090|Q9H9B1-4|EHMT1 REV__nc|ENSG00000181090|Q9H9B1-4|EHMT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 530.9662475585938 2 530.871311 1059.72807 NaN NaN NaN NaN NaN NaN NaN 156.85 1 151.56 151.06 152.06 -5.2854 0 0 0 0.2396 1 30433 30433 0.12286 0 1 + 38002 18717 25542 25558 37367 37367 0.20059475015546013 RKLHFVVG 8 Unmodified _RKLHFVVG_ 0 0 0 ADAMTSL1|p.F929Sfs*29|1|0.17|ENSG00000178031|chr9:18777009-18777009|C/-|frameshift_variant;ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ADAMTSL1|p.R1713Gfs*28|1|0.2|ENSG00000178031|chr9:18906864-18906864|C/-|frameshift_variant;ENSG00000178031|ENST00000380548|ADAMTSL1 ADAMTSL1|p.F929Sfs*29|1|0.17|ENSG00000178031|chr9:18777009-18777009|C/-|frameshift_variant ADAMTSL1|p.F929Sfs*29|1|0.17|ENSG00000178031|chr9:18777009-18777009|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.20123291015625 3 319.199383 954.57632 NaN NaN NaN NaN NaN NaN NaN 176.74 1 171.87 171.37 172.37 -4.8739 0 0 0 0.21486 1 35164 35164 0.45834 0 1 38003 66 25543 25559 37368 37368 0.09721493987842678 RKLKLKRKVR 10 Unmodified _RKLKLKRKVR_ 0 0 0 REV__ENST00000502782.5_1_5:34845647-34845701:+|nuORF REV__ENST00000502782.5_1_5:34845647-34845701:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 442.3166198730469 3 442.317374 1323.93029 NaN NaN NaN NaN NaN NaN NaN 180.01 1 175.08 174.58 175.58 -4.9248 0 0 0 0.22588 1 35923 35923 0 0 1 + 38004 22447 25544 25560 37369 37369 0.28128378420933586 RKLKPQLTGVV 11 Unmodified _RKLKPQLTGVV_ 0 0 0 REV__ENSG00000198576|ENST00000356613|ARC REV__ENSG00000198576|ENST00000356613|ARC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 619.8193359375 2 619.900797 1237.78704 NaN NaN NaN NaN NaN NaN NaN 11.788 1 11.788 11.288 12.288 0 0 0 0 0.22632 1 1593 1593 0 0 1 + 38005 19424 25545 25561 37370 37370 0.17765906519184682 RKLLLKRKLL 10 Unmodified _RKLLLKRKLL_ 0 0 0 ENST00000342992.10_3_2:179510673-179515519:-|nuORF ENST00000342992.10_3_2:179510673-179515519:-|nuORF ENST00000342992.10_3_2:179510673-179515519:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 640.9886474609375 2 640.966274 1279.918 NaN NaN NaN NaN NaN NaN NaN 173.44 1 173.44 172.94 173.94 0 0 0 0 0.22588 1 35868 35868 0 0 1 38006 8870 25546 25562 37371 37371 0.28923341957920456 RKLLLKRKLLL 11 Unmodified _RKLLLKRKLLL_ 0 0 0 ENST00000342992.10_3_2:179510673-179515519:-|nuORF ENST00000342992.10_3_2:179510673-179515519:-|nuORF ENST00000342992.10_3_2:179510673-179515519:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2481689453125 3 465.341296 1393.00206 NaN NaN NaN NaN NaN NaN NaN 177.54 1 177.54 177.04 178.04 0 0 0 0 0.23698 1 36777 36777 0 0 1 38007 8870 25547 25563 37372 37372 0.3212787305483289 RKLLLLLKP 9 Unmodified _RKLLLLLKP_ 0 0 0 ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.2476806640625 3 365.265505 1092.77469 NaN NaN NaN NaN NaN NaN NaN 5.2511 1 4.6249 4.1249 5.1249 -0.62626 0 0 0 0.23508 1 245 245 0 0 1 38008 9624 25548 25564 37373 37373 0.23200914846870546 RKLLLLLKP 9 Unmodified _RKLLLLLKP_ 0 0 0 ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.26568603515625 3 365.265505 1092.77469 NaN NaN NaN NaN NaN NaN NaN 6.6496 1 6.0233 5.5233 6.5233 -0.62626 0 0 0 0.23508 1 521 521 0 0 1 38009 9624 25548 25564 37374 37374 0.23200914846870546 RKLLLLLKP 9 Unmodified _RKLLLLLKP_ 0 0 0 ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.2667236328125 3 365.265505 1092.77469 NaN NaN NaN NaN NaN NaN NaN 7.9756 1 7.2965 6.7965 7.7965 -0.67913 0 0 0 0.23508 1 781 781 0 0 1 38010 9624 25548 25564 37375 37375 0.23200914846870546 RKLLLLLKP 9 Unmodified _RKLLLLLKP_ 0 0 0 ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.2653503417969 3 365.265505 1092.77469 NaN NaN NaN NaN NaN NaN NaN 179.8 1 175.01 174.51 175.51 -4.7898 0 0 0 0.23508 1 36783 36783 0 0 1 38011 9624 25548 25564 37376 37376 0.23200914846870546 RKLLRALIYI 10 Unmodified _RKLLRALIYI_ 0 0 0 REV__ENST00000538035.5_3_6:24804838-24804988:-|nuORF REV__ENST00000538035.5_3_6:24804838-24804988:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 629.9227905273438 2 629.921532 1257.82851 NaN NaN NaN NaN NaN NaN NaN 168.4 1 163.46 162.96 163.96 -4.948 0 0 0 2.8426 1 33199 33199 0.0013812 0.0013812 1 + 38012 22835 25549 25565 37377 37377 0.20991087278571285 RKLPKRLLR 9 Unmodified _RKLPKRLLR_ 0 0 0 CON__Q03247 CON__Q03247 CON__Q03247 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2540893554688 2 590.411666 1178.80878 NaN NaN NaN NaN NaN NaN NaN 155.99 1 155.99 155.49 156.49 0 0 0 0 0.19626 1 31282 31282 0.073264 0.069883 1 + 38013 677 25550 25566 37378 37378 0.22652756058437262 RKLRALAE 8 Unmodified _RKLRALAE_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7348937988281 2 478.803626 955.592698 NaN NaN NaN NaN NaN NaN NaN 122.38 1 117.69 117.19 118.19 -4.6873 0 0 0 0.21486 1 23499 23499 5.2307 0 1 38014 3520 25551 25567 37379 37379 0.11312575153931448 RKLRGKRRPVI 11 Unmodified _RKLRGKRRPVI_ 0 0 0 ENST00000434206.1_1_3:43020805-43095327:+|nuORF;ENSG00000144649|ENST00000430121|GASK1A ENST00000434206.1_1_3:43020805-43095327:+|nuORF ENST00000434206.1_1_3:43020805-43095327:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23236083984375 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 94.456 1 90.465 89.965 90.965 -3.9907 0 0 0 0.23698 1 18508 18508 0.094841 0 1 38015 4566 25552 25568 37380 37380 0.2418630627280436 RKLRRELD 8 Unmodified _RKLRRELD_ 0 0 0 nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2 nc|ENSG00000166833|Q8IVL1-11|NAV2 nc|ENSG00000166833|Q8IVL1-11|NAV2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78125 2 543.330539 1084.64652 0.20754 0.00011276 4.208 0.0022864 4.4156 0.0023991 543.3313521784729 84.913 0.17529 81.003 80.874 81.049 -3.9093 6 4 2 0 0 0 0.88497 1 16125 16125 10.074 3.8681 1 623760 38016 12442 25553 25569 37381 37381 0.10758747585646233 RKLRRLPILIR 11 Unmodified _RKLRRLPILIR_ 0 0 0 ENST00000441955.2_2_7:27779753-27779975:-|nuORF ENST00000441955.2_2_7:27779753-27779975:-|nuORF ENST00000441955.2_2_7:27779753-27779975:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7294616699219 3 478.668295 1432.98306 NaN NaN NaN NaN NaN NaN NaN 50.587 1 50.587 50.087 51.087 0 0 0 0 0.22632 1 9584 9584 0 0 1 38017 9895 25554 25570 37382 37382 0.28388336483794774 RKNANTYLFEW 11 Unmodified _RKNANTYLFEW_ 0 0 0 ENST00000409458.3_2_7:23296839-23297073:+|nuORF ENST00000409458.3_2_7:23296839-23297073:+|nuORF ENST00000409458.3_2_7:23296839-23297073:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2450866699219 3 481.245609 1440.715 NaN NaN NaN NaN NaN NaN NaN 101.19 1 97.032 96.532 97.532 -4.1594 0 0 0 0.22632 1 19893 19893 0.026206 0.02025 1 38018 9564 25555 25571 37383 37383 0.012269473748119708 RKNANTYLFEW 11 Unmodified _RKNANTYLFEW_ 0 0 0 ENST00000409458.3_2_7:23296839-23297073:+|nuORF ENST00000409458.3_2_7:23296839-23297073:+|nuORF ENST00000409458.3_2_7:23296839-23297073:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24493408203125 3 481.245609 1440.715 NaN NaN NaN NaN NaN NaN NaN 137.68 1 133.04 132.54 133.54 -4.6413 0 0 0 0.22632 1 27177 27177 0.172 0 1 38019 9564 25555 25571 37384 37384 0.012269473748119708 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16510009765625 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 108.79 1 108.79 108.29 109.29 0 0 0 0 0.21486 1 21393 21393 1.6526 0 1 + 38020 17487 25556 25572 37385 37385 0.004232097999192774 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16510009765625 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 109.07 1 109.07 108.57 109.57 0 0 0 0 0.21486 1 21444 21444 1.6526 0 1 + 38021 17487 25556 25572 37386 37386 0.004232097999192774 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16998291015625 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 109.14 1 109.14 108.64 109.64 0 0 0 0 0.21486 1 21458 21458 1.6526 0 1 + 38022 17487 25556 25572 37387 37387 0.004232097999192774 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16461181640625 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 114.71 1 114.71 114.21 115.21 0 0 0 0 0.21486 1 22567 22567 1.6526 0 1 + 38023 17487 25556 25572 37388 37388 0.004232097999192774 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.169921875 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 120.16 1 120.16 119.66 120.66 0 0 0 0 0.21486 1 23682 23682 1.6526 0 1 + 38024 17487 25556 25572 37389 37389 0.004232097999192774 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1726989746094 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 123.51 1 118.93 118.43 119.43 -4.5757 0 0 0 0.21486 1 24344 24344 1.6526 0 1 + 38025 17487 25556 25572 37390 37390 0.004232097999192774 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650085449219 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 131.16 1 126.53 126.03 127.03 -4.6359 0 0 0 0.21486 1 25848 25848 1.4819 0.28856 1 + 38026 17487 25556 25572 37391 37391 0.004232097999192774 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650085449219 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 121.5 1 116.82 116.32 117.32 -4.6873 0 0 0 0.21486 1 23327 23327 1.6526 0 1 + 38027 17487 25556 25572 37392 37392 0.004232097999192774 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 125.46 1 120.69 120.19 121.19 -4.7681 0 0 0 0.21486 1 24078 24078 1.6526 0 1 + 38028 17487 25556 25572 37393 37393 0.004232097999192774 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 121.43 1 116.9 116.4 117.4 -4.5305 0 0 0 0.21486 1 23376 23376 1.6526 0 1 + 38029 17487 25556 25572 37394 37394 0.004232097999192774 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649475097656 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 122.8 1 118.21 117.71 118.71 -4.5926 0 0 0 0.21486 1 23639 23639 1.6526 0 1 + 38030 17487 25556 25572 37395 37395 0.004232097999192774 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650695800781 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 125.07 1 120.42 119.92 120.92 -4.6495 0 0 0 0.21486 1 24061 24061 1.6526 0 1 + 38031 17487 25556 25572 37396 37396 0.004232097999192774 RKNCAHIS 8 Unmodified _RKNCAHIS_ 0 0 0 REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1653137207031 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 125.33 1 120.68 120.18 121.18 -4.6495 0 0 0 0.21486 1 24113 24113 1.6526 0 1 + 38032 17487 25556 25572 37397 37397 0.004232097999192774 RKNCNTVD 8 Unmodified _RKNCNTVD_ 0 0 0 REV__NXPE1|p.E304Gfs*35|1|0.11|ENSG00000095110|chr11:114523075-114523076|TT/-|frameshift_variant REV__NXPE1|p.E304Gfs*35|1|0.11|ENSG00000095110|chr11:114523075-114523076|TT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1697082519531 3 317.155514 948.444714 NaN NaN NaN NaN NaN NaN NaN 13.181 1 12.008 11.508 12.508 -1.173 0 0 0 0.21486 1 1686 1686 0.45834 0 1 + 38033 14603 25557 25573 37398 37398 -0.031571041622328266 RKNEIFRKF 9 Unmodified _RKNEIFRKF_ 0 0 0 tr|U7SUZ6|U7SUZ6_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01451PE=4SV=1 tr|U7SUZ6|U7SUZ6_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01451PE=4SV=1 tr|U7SUZ6|U7SUZ6_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01451PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16949462890625 4 310.184558 1236.70913 -0.61912 -0.00019204 -2.0177 -0.00062586 -2.6368 -0.0008179 310.43468107474723 12.51 0.17074 12.51 12.411 12.582 0 6 4 2 0 0 0 0.66867 1 1733 1733 0.20686 0 1 157970 38034 26219 25558 25574 37399 37399 0.10023893653828964 RKNIWIKRGDF 11 Unmodified _RKNIWIKRGDF_ 0 0 0 ENSG00000175376|ENST00000533544|EIF1AD ENSG00000175376|ENST00000533544|EIF1AD ENSG00000175376|ENST00000533544|EIF1AD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7273864746094 3 478.277244 1431.8099 NaN NaN NaN NaN NaN NaN NaN 78.561 1 78.561 78.061 79.061 0 0 0 0 0.22632 1 15291 15291 1.4551 1.4546 1 38035 6405 25559 25575 37400 37400 0.11126925636676788 RKNTELKKY 9 Unmodified _RKNTELKKY_ 0 0 0 REV__tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1 REV__tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2565307617188 2 590.345855 1178.67716 NaN NaN NaN NaN NaN NaN NaN 134.07 1 129.2 128.7 129.7 -4.8726 0 0 0 0.19632 1 25758 25758 0.40827 0 1 + 38036 24991 25560 25576 37401 37401 0.09496481180030969 RKNVNLGL 8 Unmodified _RKNVNLGL_ 0 0 0 REV__ENST00000434603.2_1_11:75316186-75316648:-|nuORF REV__ENST00000434603.2_1_11:75316186-75316648:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 305.19110107421875 3 305.190776 912.550499 NaN NaN NaN NaN NaN NaN NaN 38.329 1 35.888 35.388 36.388 -2.4419 0 0 0 0.23881 1 6818 6818 1.4551 0 1 + 38037 21652 25561 25577 37402 37402 0.09072599745559273 RKPLHGLVEVP 11 Unmodified _RKPLHGLVEVP_ 0 0 0 REV__ENSG00000203908|ENST00000370367|KHDC3L REV__ENSG00000203908|ENST00000370367|KHDC3L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.776611328125 2 622.877322 1243.74009 NaN NaN NaN NaN NaN NaN NaN 142.08 1 137.21 136.71 137.71 -4.8678 0 0 0 0.23429 1 27414 27414 4.897 1.6157 1 + 38038 19503 25562 25578 37403 37403 0.12797046968057657 RKPPTPATKK 10 Unmodified _RKPPTPATKK_ 0 0 0 REV__ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant REV__ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21014404296875 3 375.236385 1122.68733 -0.65225 -0.00024475 0.64551 0.00024222 -0.0067391 -2.5288E-06 375.2366219133666 94.247 0.85748 90.403 89.956 90.813 -3.844 38 24 2 0 0 0 0.72703 1 18151 18151 8.4443 2.2525 1 3521800 + 38039 12907 25563 25579 37404 37404 0.13089088905280732 RKPQAHHQY 9 Unmodified _RKPQAHHQY_ 0 0 0 REV__ENST00000558303.5_1_15:69737113-69740143:+|nuORF REV__ENST00000558303.5_1_15:69737113-69740143:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 584.7559204101562 2 582.804688 1163.59482 -0.054163 -3.1566E-05 0.40924 0.00023851 0.35508 0.00020694 582.8048746555282 19.477 0.34426 18.152 18.002 18.346 -1.3251 25 9 4 0 0 0 0.79297 1 2955 2955 2.0598 2.0598 1 6498800 + 38040 16410 25564 25580 37405 37405 0.019570038917663624 RKPQAHHQY 9 Unmodified _RKPQAHHQY_ 0 0 0 REV__ENST00000558303.5_1_15:69737113-69740143:+|nuORF REV__ENST00000558303.5_1_15:69737113-69740143:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 582.804688 1163.59482 0.26072 0.00015195 -0.11247 -6.5545E-05 0.14825 8.6403E-05 582.8046175676112 18.004 0.39231 18.004 17.803 18.195 0 -0.11362 -0.00021882 NaN 2.0598 28 10 4 NaN NaN NaN NaN 0 NaN NaN 0 6816400 + 38041 16410 25564 25580 0.019570038917663624 RKPQAHHQY 9 Unmodified _RKPQAHHQY_ 0 0 0 REV__ENST00000558303.5_1_15:69737113-69740143:+|nuORF REV__ENST00000558303.5_1_15:69737113-69740143:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 582.804688 1163.59482 0.37749 0.00022 -0.077771 -4.5325E-05 0.29972 0.00017468 582.8047196472171 19.594 0.38018 18.198 18.066 18.447 -1.3966 0.079856 -0.00017838 NaN 2.0598 27 10 4 NaN NaN NaN NaN 0 NaN NaN 0 3505800 + 38042 16410 25564 25580 0.019570038917663624 RKPRPVSL 8 Unmodified _RKPRPVSL_ 0 0 0 ENST00000564747.1_1_16:27472673-27473321:-|nuORF;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 ENST00000564747.1_1_16:27472673-27473321:-|nuORF;nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.2142333984375 3 318.206538 951.597784 NaN NaN NaN NaN NaN NaN NaN 177.16 1 172.37 171.87 172.87 -4.7898 0 0 0 0.21486 1 36234 36234 1.6526 0 1 38043 1555;11349 25565 25581 37406 37406 0.12004879016558334 RKPRVLKPL 9 Unmodified _RKPRVLKPL_ 0 0 0 XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant XRN1|p.R1611Gfs*34|5|0.22|ENSG00000114127|chr3:142311801-142311801|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 553.8967895507812 2 553.879668 1105.74478 NaN NaN NaN NaN NaN NaN NaN 162.98 1 162.98 162.48 163.48 0 0 0 0 0.19631 1 32812 32812 0.20686 0 1 38044 26585 25566 25582 37407 37407 0.19613975901484082 RKPRVRAP 8 Unmodified _RKPRVRAP_ 0 0 0 ENST00000328914.4_1_7:4806266-4806500:+|nuORF ENST00000328914.4_1_7:4806266-4806500:+|nuORF ENST00000328914.4_1_7:4806266-4806500:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2645263671875 2 490.317235 978.619916 NaN NaN NaN NaN NaN NaN NaN 89.599 1 89.599 89.099 90.099 0 0 0 0 0.23749 1 17499 17499 0.62683 0.50396 1 38045 8759 25567 25583 37408 37408 0.1297510348498463 RKPVPLRP 8 Unmodified _RKPVPLRP_ 0 0 0 COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant;ENSG00000196739|ENST00000356083|COL27A1;COL27A1|p.E1076Sfs*7|1|0.43|ENSG00000196739|chr9:114264382-114264382|G/-|frameshift_variant;COL27A1|p.P816Lfs*10|1|0.52|ENSG00000196739|chr9:114222243-114222243|C/-|frameshift_variant;COL27A1|p.E848Sfs*4|1|0.46|ENSG00000196739|chr9:114231839-114231839|G/-|frameshift_variant;COL27A1|p.P918Lfs*9|1|0.21|ENSG00000196739|chr9:114240240-114240240|C/-|frameshift_variant;nc|ENSG00000196739|Q8IZC6-3|COL27A1 COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7734069824219 2 481.816536 961.618519 NaN NaN NaN NaN NaN NaN NaN 161.08 1 161.08 160.58 161.58 0 0 0 0 0.2396 1 32347 32347 0.12286 0 1 38046 625 25568 25584 37409 37409 0.13617469396228898 RKQDPEWK 8 Unmodified _RKQDPEWK_ 0 0 0 nc|ENSG00000152492|Q8IVM0|CCDC50;ENSG00000152492|ENST00000392455|CCDC50 nc|ENSG00000152492|Q8IVM0|CCDC50 nc|ENSG00000152492|Q8IVM0|CCDC50 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7894287109375 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 47.569 1 47.569 47.069 48.069 0 0 0 0 0.23664 1 8972 8972 3.2813 3.268 1 38047 4926 25569 25585 37410 37410 0.02243377049035189 RKQIKKKKKR 10 Unmodified _RKQIKKKKKR_ 0 0 0 REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 670.9716186523438 2 670.96988 1339.92521 NaN NaN NaN NaN NaN NaN NaN 176.98 1 176.98 176.48 177.48 0 0 0 0 2.8426 1 36663 36663 0.13989 0 1 + 38048 20854 25570 25586 37411 37411 0.26884074558324755 RKQIKKKKKR 10 Unmodified _RKQIKKKKKR_ 0 0 0 REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 670.9066772460938 2 670.96988 1339.92521 NaN NaN NaN NaN NaN NaN NaN 177.62 1 177.62 177.12 178.12 0 0 0 0 2.8426 1 36794 36794 0.13989 0 1 + 38049 20854 25570 25586 37412 37412 0.26884074558324755 RKQLFSFSK 9 Unmodified _RKQLFSFSK_ 0 0 0 nc|ENSG00000174776|Q8IV35-3|CFAP337;WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant;ENSG00000174776|ENST00000682715|WDR49;ENST00000460448.5_1_3:167254737-167322194:-|nuORF nc|ENSG00000174776|Q8IV35-3|CFAP337 nc|ENSG00000174776|Q8IV35-3|CFAP337 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21160888671875 3 380.888986 1139.64513 -0.64624 -0.00024615 0.56505 0.00021522 -0.081188 -3.0924E-05 380.88917227934513 94.4 0.55061 90.556 90.296 90.847 -3.844 25 15 2 0 0 0 0.39168 1 18167 18167 0.40827 0 1 2087700 38050 6368 25571 25587 37413 37413 0.08089113496885147 RKQLRLRKLV 10 Unmodified _RKQLRLRKLV_ 0 0 0 REV__ENSG00000166165|ENST00000348956|CKB REV__ENSG00000166165|ENST00000348956|CKB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2151794433594 3 437.301612 1308.88301 NaN NaN NaN NaN NaN NaN NaN 117.1 1 112.52 112.02 113.02 -4.5815 0 0 0 0.22588 1 22468 22468 0.15932 0 1 + 38051 17830 25572 25588 37414 37414 0.24092099149970636 RKQSYQPR 8 Unmodified _RKQSYQPR_ 0 0 0 REV__ENSG00000073910|ENST00000542859|FRY REV__ENSG00000073910|ENST00000542859|FRY MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 531.7935791015625 2 531.793789 1061.57303 NaN NaN NaN NaN NaN NaN NaN 8.254 1 7.5748 7.0748 8.0748 -0.67913 0 0 0 0.21486 1 838 838 0.69038 0 1 + 38052 14307 25573 25589 37415 37415 0.04470199143179343 RKRAWLMKE 9 Unmodified _RKRAWLMKE_ 0 0 0 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 406.5681457519531 3 406.56937 1216.68628 NaN NaN NaN NaN NaN NaN NaN 141.16 1 136.17 135.67 136.67 -4.9877 0 0 0 0.23508 1 27179 27179 1.1933 0.12188 1 + 38053 18323 25574 25590 37416 37416 0.08660551264711103 RKRDLPCFD 9 Unmodified _RKRDLPCFD_ 0 0 0 REV__LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant REV__LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 383.8648376464844 3 383.865964 1148.57606 NaN NaN NaN NaN NaN NaN NaN 9.3107 1 9.3107 8.8107 9.8107 0 0 0 0 0.23508 1 1063 1063 0.26902 0.26902 1 + 38054 16523 25575 25591 37417 37417 0.007717062056826762 RKRFLMELKTF 11 Unmodified _RKRFLMELKTF_ 0 0 0 tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1 tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1 tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26397705078125 3 490.286751 1467.83842 NaN NaN NaN NaN NaN NaN NaN 73.087 1 69.777 69.277 70.277 -3.3107 0 0 0 0.22632 1 14248 14248 0.50596 0 1 38055 26490 25576 25592 37418 37418 0.12321907221598849 RKRHKALHYAT 11 Unmodified _RKRHKALHYAT_ 0 0 0 REV__ENSG00000179761|ENST00000323372|PIPOX REV__ENSG00000179761|ENST00000323372|PIPOX MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.93585205078125 3 460.937221 1379.78984 NaN NaN NaN NaN NaN NaN NaN 10.414 1 9.5098 9.0098 10.01 -0.90401 0 0 0 0.23698 1 1301 1301 0.08335 0 1 + 38056 18665 25577 25593 37419 37419 0.11513174696756323 RKRKIIIPQ 9 Unmodified _RKRKIIIPQ_ 0 0 0 REV__ENSG00000038219|ENST00000040738|BOD1L1 REV__ENSG00000038219|ENST00000040738|BOD1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3386840820312 2 576.3904 1150.76625 NaN NaN NaN NaN NaN NaN NaN 119.11 1 119.11 118.61 119.61 0 0 0 0 0.23508 1 23464 23464 0.52476 0 1 + 38057 14038 25578 25594 37420 37420 0.19689360930215116 RKRKKKKRWQQ 11 Unmodified _RKRKKKKRWQQ_ 0 0 0 PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant;PHF23|p.D230Ifs*37|1|0.2|ENSG00000040633|chr17:7236239-7236239|C/-|frameshift_variant PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.385009765625 2 785.499867 1568.98518 NaN NaN NaN NaN NaN NaN NaN 123.13 1 118.55 118.05 119.05 -4.5757 0 0 0 0.22632 1 24274 24274 0 0 1 38058 12783 25579 25595 37421 37421 0.223447652215782 RKRKKKKRWQQ 11 Unmodified _RKRKKKKRWQQ_ 0 0 0 PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant;PHF23|p.D230Ifs*37|1|0.2|ENSG00000040633|chr17:7236239-7236239|C/-|frameshift_variant PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.394287109375 2 785.499867 1568.98518 NaN NaN NaN NaN NaN NaN NaN 114.16 1 109.6 109.1 110.1 -4.555 0 0 0 0.22632 1 21918 21918 0 0 1 38059 12783 25579 25595 37422 37422 0.223447652215782 RKRKKKKRWQQ 11 Unmodified _RKRKKKKRWQQ_ 0 0 0 PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant;PHF23|p.D230Ifs*37|1|0.2|ENSG00000040633|chr17:7236239-7236239|C/-|frameshift_variant PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3873291015625 2 785.499867 1568.98518 NaN NaN NaN NaN NaN NaN NaN 167.51 1 162.62 162.12 163.12 -4.8916 0 0 0 0.22632 1 32956 32956 0 0 1 38060 12783 25579 25595 37423 37423 0.223447652215782 RKRKKKKRWQQ 11 Unmodified _RKRKKKKRWQQ_ 0 0 0 PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant;PHF23|p.D230Ifs*37|1|0.2|ENSG00000040633|chr17:7236239-7236239|C/-|frameshift_variant PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4104614257812 2 785.499867 1568.98518 NaN NaN NaN NaN NaN NaN NaN 167.53 1 162.64 162.14 163.14 -4.8916 0 0 0 0.23698 1 32960 32960 0 0 1 38061 12783 25579 25595 37424 37424 0.223447652215782 RKRKWRREKRA 11 Unmodified _RKRKWRREKRA_ 0 0 0 ENST00000377967.8_1_X:44732855-44732921:+|nuORF ENST00000377967.8_1_X:44732855-44732921:+|nuORF ENST00000377967.8_1_X:44732855-44732921:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4100341796875 2 785.487291 1568.96003 NaN NaN NaN NaN NaN NaN NaN 126.64 1 122.02 121.52 122.52 -4.6172 0 0 0 0.23698 1 24968 24968 0.30703 0 1 38062 9271 25580 25596 37425 37425 0.19830710418978015 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2454528808594 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 17.766 1 17.766 17.266 18.266 0 0 0 0 2.8426 1 2826 2826 0 0 1 + 38063 17153 25581 25597 37426 37426 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24755859375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 46.179 1 46.179 45.679 46.679 0 0 0 0 2.8426 1 8695 8695 0 0 1 + 38064 17153 25581 25597 37427 37427 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25128173828125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 118.26 1 118.26 117.76 118.76 0 0 0 0 2.8426 1 23295 23295 0.13989 0 1 + 38065 17153 25581 25597 37428 37428 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.251220703125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 159.9 1 159.9 159.4 160.4 0 0 0 0 2.8426 1 32103 32103 0 0 1 + 38066 17153 25581 25597 37429 37429 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2557678222656 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 20.123 1 18.726 18.226 19.226 -1.3966 0 0 0 0.22588 1 3349 3349 0 0 1 + 38067 17153 25581 25597 37430 37430 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2507019042969 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 87.916 1 84.123 83.623 84.623 -3.7926 0 0 0 2.8426 1 17194 17194 0 0 1 + 38068 17153 25581 25597 37431 37431 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2496337890625 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 151.43 1 146.67 146.17 147.17 -4.7523 0 0 0 2.8426 1 30082 30082 0 0 1 + 38069 17153 25581 25597 37432 37432 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2511291503906 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 67.324 1 63.828 63.328 64.328 -3.4965 0 0 0 2.8426 1 12629 12629 0 0 1 + 38070 17153 25581 25597 37433 37433 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24609375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 128.1 1 123.28 122.78 123.78 -4.817 0 0 0 0.22588 1 24591 24591 0.15932 0 1 + 38071 17153 25581 25597 37434 37434 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2474670410156 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 36.469 1 34.131 33.631 34.631 -2.3375 0 0 0 2.8426 1 6436 6436 0 0 1 + 38072 17153 25581 25597 37435 37435 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2505798339844 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 39.83 1 37.425 36.925 37.925 -2.4049 0 0 0 2.8426 1 7114 7114 0 0 1 + 38073 17153 25581 25597 37436 37436 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2505798339844 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 41.998 1 39.392 38.892 39.892 -2.606 0 0 0 2.8426 1 7545 7545 0 0 1 + 38074 17153 25581 25597 37437 37437 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2454528808594 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 135.22 1 130.39 129.89 130.89 -4.8307 0 0 0 2.8426 1 26030 26030 0.0013812 0 1 + 38075 17153 25581 25597 37438 37438 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.251953125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 159.54 1 154.27 153.77 154.77 -5.2712 0 0 0 2.8426 1 30954 30954 0 0 1 + 38076 17153 25581 25597 37439 37439 0.21390489652867473 RKRKYLLIAI 10 Unmodified _RKRKYLLIAI_ 0 0 0 REV__nc|ENSG00000153707|P23468-3|PTPRD REV__nc|ENSG00000153707|P23468-3|PTPRD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2429504394531 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 159.56 1 154.29 153.79 154.79 -5.2712 0 0 0 2.8426 1 30961 30961 0 0 1 + 38077 17153 25581 25597 37440 37440 0.21390489652867473 RKRLKKKKKKK 11 Unmodified _RKRLKKKKKKK_ 0 0 0 nc|ENSG00000067066|P23497-5|SP100 nc|ENSG00000067066|P23497-5|SP100 nc|ENSG00000067066|P23497-5|SP100 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2630615234375 3 490.359461 1468.05655 NaN NaN NaN NaN NaN NaN NaN 159.47 1 159.47 158.97 159.97 0 0 0 0 0.22632 1 32020 32020 0 0 1 38078 12228 25582 25598 37441 37441 0.34124884926222876 RKRLTSQSNCL 11 Unmodified _RKRLTSQSNCL_ 0 0 0 REV__ENST00000606198.5_1_6:28109763-28116190:+|nuORF REV__ENST00000606198.5_1_6:28109763-28116190:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 435.8948669433594 3 435.906711 1304.6983 NaN NaN NaN NaN NaN NaN NaN 10.082 1 9.2881 8.7881 9.7881 -0.79424 0 0 0 0.23698 1 1227 1227 0.094841 0 1 + 38079 23456 25583 25599 37442 37442 0.058141232172829405 RKRMFNLN 8 Unmodified _RKRMFNLN_ 0 0 0 FERD3L|p.R109H|1|0.29|ENSG00000146618|chr7:19145037-19145037|C/T|missense_variant;FERD3L|p.A120V|1|0.08|ENSG00000146618|chr7:19145004-19145004|G/A|missense_variant;ENSG00000146618|ENST00000275461|FERD3L FERD3L|p.R109H|1|0.29|ENSG00000146618|chr7:19145037-19145037|C/T|missense_variant FERD3L|p.R109H|1|0.29|ENSG00000146618|chr7:19145037-19145037|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 176.1 1 176.1 175.6 176.6 0 0 0 0 0.21486 1 36481 36481 0.40072 0 1 38080 4663 25584 25600 37443 37443 0.050877336507710424 RKRMHQLLQAL 11 Unmodified _RKRMHQLLQAL_ 0 0 0 ENSG00000146090|ENST00000361132|RASGEF1C ENSG00000146090|ENST00000361132|RASGEF1C ENSG00000146090|ENST00000361132|RASGEF1C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2474670410156 3 465.278479 1392.81361 NaN NaN NaN NaN NaN NaN NaN 133.45 1 128.57 128.07 129.07 -4.8726 0 0 0 0.22632 1 25638 25638 0.172 0 1 38081 4639 25585 25601 37444 37444 0.1329127213891752 RKRNSEVKY 9 Unmodified _RKRNSEVKY_ 0 0 0 FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant;FAM200B|p.N290Tfs*13|1|0.43|ENSG00000237765|chr4:15687842-15687842|A/-|frameshift_variant;FAM200B|p.K312Nfs*3|1|0.33|ENSG00000237765|chr4:15687908-15687908|A/-|frameshift_variant;ENSG00000237765|ENST00000422728|FAM200B FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant FAM200B|p.L261Ffs*25|2|0.41|ENSG00000237765|chr4:15687753-15687754|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2572021484375 2 590.333279 1178.652 NaN NaN NaN NaN NaN NaN NaN 38.601 1 36.159 35.659 36.659 -2.4419 0 0 0 0.23508 1 6874 6874 7.2892 1.0834 1 38082 11796 25586 25602 37445 37445 0.06982426377476258 RKRQSLLLRHK 11 Unmodified _RKRQSLLLRHK_ 0 0 0 REV__HAUS8|p.R197H|1|0.33|ENSG00000131351|chr19:17058604-17058604|C/T|missense_variant REV__HAUS8|p.R197H|1|0.33|ENSG00000131351|chr19:17058604-17058604|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2167663574219 4 359.48366 1433.90553 -0.6769 -0.00024333 -1.0554 -0.0003794 -1.7323 -0.00062273 359.483040471453 85.084 0.89906 81.372 80.767 81.666 -3.7117 78 25 4 0 0 0 0.82458 1 16248 16248 0.36667 0.27183 1 2885000 + 38083 23603 25587 25603 37446 37446 0.2059369854760007 RKRRKERKKER 11 Unmodified _RKRRKERKKER_ 0 0 0 nc|ENSG00000163081|Q96MF4|CCDC140 nc|ENSG00000163081|Q96MF4|CCDC140 nc|ENSG00000163081|Q96MF4|CCDC140 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.398193359375 2 785.497856 1568.98116 NaN NaN NaN NaN NaN NaN NaN 142.36 1 137.33 136.83 137.83 -5.0261 0 0 0 0.22632 1 27437 27437 0.026206 0 1 38084 12414 25588 25604 37447 37447 0.21942675727837013 RKRRQRSEK 9 Unmodified _RKRRQRSEK_ 0 0 0 KCNA4|p.R85K|1|0.13|ENSG00000182255|chr11:30012425-30012425|C/T|missense_variant KCNA4|p.R85K|1|0.13|ENSG00000182255|chr11:30012425-30012425|C/T|missense_variant KCNA4|p.R85K|1|0.13|ENSG00000182255|chr11:30012425-30012425|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.2725524902344 3 415.253321 1242.73813 NaN NaN NaN NaN NaN NaN NaN 179.21 1 174.3 173.8 174.8 -4.9114 0 0 0 0.23508 1 35757 35757 0.96228 0.69326 1 38085 11979 25589 25605 37448 37448 0.12647431002824305 RKRRRKHRE 9 Unmodified _RKRRRKHRE_ 0 0 0 nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.P246Lfs*49|1|0.33|ENSG00000170004|chr17:7893509-7893509|C/-|frameshift_variant;CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-3|CHD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 441.2743225097656 3 441.27646 1320.80755 NaN NaN NaN NaN NaN NaN NaN 12.385 1 11.375 10.875 11.875 -1.0098 0 0 0 0.19623 1 1715 1715 0.0033805 0 1 38086 12455 25590 25606 37449 37449 0.15997934742222242 RKRRRRKPRRR 11 Unmodified _RKRRRRKPRRR_ 0 0 0 REV__ENST00000560168.1_1_19:46269581-46272089:-|nuORF REV__ENST00000560168.1_1_19:46269581-46272089:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.26171875 3 541.027991 1620.06214 NaN NaN NaN NaN NaN NaN NaN 94.663 1 90.472 89.972 90.972 -4.1911 0 0 0 0.23698 1 18063 18063 0.08335 0 1 + 38087 23039 25591 25607 37450 37450 0.2769142128126987 RKRRRRRRRPA 11 Unmodified _RKRRRRRRRPA_ 0 0 0 REV__PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant REV__PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2713012695312 3 522.008708 1563.00429 -0.24319 -0.00012695 1.3571 0.00070843 1.1139 0.00058148 522.3428273582878 131.9 0.14026 127.26 127.17 127.31 -4.6399 5 3 2 0 0 0 0.96228 1 25980 25980 0 0 1 984100 + 38088 24518 25592 25608 37451 37451 0.24531159355865384 RKRSKFGA 8 Unmodified _RKRSKFGA_ 0 0 0 DCAF4L1|p.K58Rfs*31|1|0.35|ENSG00000182308|chr4:41981961-41981961|A/-|frameshift_variant DCAF4L1|p.K58Rfs*31|1|0.35|ENSG00000182308|chr4:41981961-41981961|A/-|frameshift_variant DCAF4L1|p.K58Rfs*31|1|0.35|ENSG00000182308|chr4:41981961-41981961|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1872253417969 3 317.194521 948.561733 NaN NaN NaN NaN NaN NaN NaN 10.866 1 9.7722 9.2722 10.272 -1.0936 0 0 0 0.21486 1 1260 1260 0.45834 0 1 38089 785 25593 25609 37452 37452 0.08539421839714123 RKRSLLRSLM 10 Unmodified _RKRSLLRSLM_ 0 0 0 REV__ENSG00000180090|ENST00000323404|OR3A1 REV__ENSG00000180090|ENST00000323404|OR3A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7728881835938 2 630.390074 1258.76559 0.74256 0.00046811 -0.95185 -0.00060004 -0.20928 -0.00013193 630.389486664783 100.32 0.72598 100.32 100 100.73 0 33 20 2 0 0 0 0.42762 1 19683 19683 10.151 3.5202 1 3065200 + 38090 18674 25594 25610 37453 37453 0.14656198218858663 RKRSLLRSLM 10 Unmodified _RKRSLLRSLM_ 0 0 0 REV__ENSG00000180090|ENST00000323404|OR3A1 REV__ENSG00000180090|ENST00000323404|OR3A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7642211914062 2 630.390074 1258.76559 0.37807 0.00023833 -0.3971 -0.00025033 -0.019028 -1.1995E-05 630.3897907806488 104.8 0.61685 100.45 100.08 100.69 -4.346 33 17 3 0 0 0 0.42762 1 20036 20036 10.151 3.5202 1 3193100 + 38091 18674 25594 25610 37454 37454 0.14656198218858663 RKRSLLRSLM 10 Unmodified _RKRSLLRSLM_ 0 0 0 REV__ENSG00000180090|ENST00000323404|OR3A1 REV__ENSG00000180090|ENST00000323404|OR3A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7644653320312 2 630.390074 1258.76559 0.96431 0.00060789 -1.0362 -0.00065322 -0.071913 -4.5333E-05 630.8907192193266 104.41 0.56662 100.36 100.09 100.66 -4.0543 29 15 2 0 0 0 1.1218 1 20074 20074 10.151 3.5202 1 3013300 + 38092 18674 25594 25610 37455 37455 0.14656198218858663 RKRWGRMRNL 10 Unmodified _RKRWGRMRNL_ 0 0 0 ENST00000465550.5_1_2:220098965-220099016:+|nuORF ENST00000465550.5_1_2:220098965-220099016:+|nuORF ENST00000465550.5_1_2:220098965-220099016:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.239501953125 3 458.266685 1371.77822 0.22054 0.00010106 -1.1249 -0.00051549 -0.90433 -0.00041442 458.60047250807025 125.15 0.94875 120.5 120.14 121.08 -4.6495 54 26 3 0 0 0 0.76269 1 24174 24174 1.7423 0.41263 1 3159000 38093 10121 25595 25611 37456 37456 0.10720654401779939 RKRWRTIKLLL 11 Unmodified _RKRWRTIKLLL_ 0 0 0 nc|ENSG00000144504|Q9P2S6-3|ANKMY1;nc|ENSG00000144504|Q9P2S6-2|ANKMY1;ANKMY1|p.V598Yfs*37|1|0.29|ENSG00000144504|chr2:240512888-240512888|C/-|frameshift_variant;ENSG00000144504|ENST00000401804|ANKMY1;nc|ENSG00000144504|Q9P2S6-4|ANKMY1;nc|ENSG00000144504|Q9P2S6|ANKMY1 nc|ENSG00000144504|Q9P2S6-3|ANKMY1 nc|ENSG00000144504|Q9P2S6-3|ANKMY1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.388427734375 2 741.990812 1481.96707 NaN NaN NaN NaN NaN NaN NaN 140.5 1 140.5 140 141 0 0 0 0 0.22632 1 27975 27975 0.00056442 0.00056442 1 38094 157 25596 25612 37457 37457 0.24536630246893765 RKRWYLIYRQF 11 Unmodified _RKRWYLIYRQF_ 0 0 0 REV__ZNF277|p.K246Nfs*87|1|0.16|ENSG00000198839|chr7:112330148-112330148|A/-|frameshift_variant REV__ZNF277|p.K246Nfs*87|1|0.16|ENSG00000198839|chr7:112330148-112330148|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.779541015625 3 543.643927 1627.90995 NaN NaN NaN NaN NaN NaN NaN 116.2 1 111.71 111.21 112.21 -4.486 0 0 0 0.22632 1 22912 22912 0.50596 0.50596 1 + 38095 19460 25597 25613 37458 37458 0.1211116297049557 RKSFSSFPD 9 Unmodified _RKSFSSFPD_ 0 0 0 REV__ENST00000487284.2_1_7:101917466-101926379:+|nuORF REV__ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.072509765625 3 357.513696 1069.51926 0.074841 2.6757E-05 0.024391 8.7201E-06 0.099232 3.5477E-05 357.5136581095947 57.033 0.90212 53.843 53.441 54.343 -3.1895 45 25 2 0 0 0 0.8799 1 10532 10532 4.897 2.3985 1 3401600 + 38096 22255 25598 25614 37459 37459 -0.012720180791802704 RKSGAFCVC 9 Unmodified _RKSGAFCVC_ 0 0 0 ENSG00000180613|ENST00000326902|GSX2 ENSG00000180613|ENST00000326902|GSX2 ENSG00000180613|ENST00000326902|GSX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1596374511719 3 324.15809 969.452441 NaN NaN NaN NaN NaN NaN NaN 77.455 1 73.992 73.492 74.492 -3.4633 0 0 0 0.23508 1 15123 15123 2.9952 0 1 38097 6683 25599 25615 37460 37460 -0.03350668166297055 RKSGFPIRY 9 Unmodified _RKSGFPIRY_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21868896484375 3 375.217214 1122.62981 NaN NaN NaN NaN NaN NaN NaN 56.087 1 53.193 52.693 53.693 -2.8944 0 0 0 0.23508 1 10740 10740 4.5289 0.93237 1 38098 6030 25600 25616 37461 37461 0.07340246699709496 RKSMILRLQE 10 Unmodified _RKSMILRLQE_ 0 0 0 ENST00000474026.5_1_1:223945334-223945403:+|nuORF ENST00000474026.5_1_1:223945334-223945403:+|nuORF ENST00000474026.5_1_1:223945334-223945403:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2538757324219 3 425.251818 1272.73363 NaN NaN NaN NaN NaN NaN NaN 175.2 1 170.31 169.81 170.81 -4.8916 0 0 0 0.22588 1 34918 34918 0.62683 0 1 38099 10250 25601 25617 37462 37462 0.10816785745055313 RKSQKKKKL 9 Unmodified _RKSQKKKKL_ 0 0 0 REV__ENST00000584588.5_1_17:38027782-38031519:+|nuORF REV__ENST00000584588.5_1_17:38027782-38031519:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 572.1350708007812 2 572.387857 1142.76116 NaN NaN NaN NaN NaN NaN NaN 169.73 1 164.86 164.36 165.36 -4.873 0 0 0 0.19626 1 33545 33545 0.073264 0 1 + 38100 23254 25602 25618 37463 37463 0.19549057067592912 RKSRRRRCPRY 11 Unmodified _RKSRRRRCPRY_ 0 0 0 ENST00000585403.5_1_17:40719142-40721608:+|nuORF ENST00000585403.5_1_17:40719142-40721608:+|nuORF ENST00000585403.5_1_17:40719142-40721608:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 511.764892578125 3 511.963776 1532.8695 NaN NaN NaN NaN NaN NaN NaN 122.28 1 117.59 117.09 118.09 -4.6873 0 0 0 0.22632 1 23479 23479 0.026206 0 1 38101 11531 25603 25619 37464 37464 0.12437918099089984 RKTTRKARY 9 Unmodified _RKTTRKARY_ 0 0 0 REV__ENSG00000133019|ENST00000676153|CHRM3 REV__ENSG00000133019|ENST00000676153|CHRM3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.25927734375 2 590.357088 1178.69962 NaN NaN NaN NaN NaN NaN NaN 30.783 1 28.709 28.209 29.209 -2.0743 0 0 0 0.23508 1 5282 5282 2.0598 0 1 + 38102 16147 25604 25620 37465 37465 0.11742125368323286 RKTWRRRGQQP 11 Unmodified _RKTWRRRGQQP_ 0 0 0 ENSG00000185269|ENST00000409678|NOTUM ENSG00000185269|ENST00000409678|NOTUM ENSG00000185269|ENST00000409678|NOTUM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.263427734375 3 490.283392 1467.82835 NaN NaN NaN NaN NaN NaN NaN 34.627 1 32.31 31.81 32.81 -2.3175 0 0 0 0.22632 1 6363 6363 0.50596 0 1 38103 6975 25605 25621 37466 37466 0.11314480331247978 RKVKLPIIG 9 Unmodified _RKVKLPIIG_ 0 0 0 ENST00000574137.1_1_16:10846489-10855721:+|nuORF;ENST00000571790.5_1_16:10837720-10857402:+|nuORF;nc|ENSG00000103274|P53384-2|NUBP1;ENSG00000103274|ENST00000283027|NUBP1 ENST00000574137.1_1_16:10846489-10855721:+|nuORF ENST00000574137.1_1_16:10846489-10855721:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.5032958984375 2 512.355494 1022.69644 0.21486 0.00011009 0.13904 7.1237E-05 0.3539 0.00018132 512.3554986768644 176.85 0.45435 176.85 176.7 177.15 0 16 12 2 0 0 0 0.65319 1 36619 36619 0 0 1 1121200 38104 2180 25606 25622 37467 37467 0.1859948226161805 RKVLLKIFY 9 Unmodified _RKVLLKIFY_ 0 0 0 REV__tr|U7SJ95|U7SJ95_FUSNUDUF3800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02154PE=4SV=1 REV__tr|U7SJ95|U7SJ95_FUSNUDUF3800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02154PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2708129882812 2 590.384251 1178.75395 NaN NaN NaN NaN NaN NaN NaN 152.63 1 147.36 146.86 147.86 -5.2669 0 0 0 0.19634 1 29594 29594 0.40827 0 1 + 38105 24908 25607 25623 37468 37468 0.17172324467173894 RKVLNKIKFK 10 Unmodified _RKVLNKIKFK_ 0 0 0 ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2507629394531 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 159.21 1 153.94 153.44 154.44 -5.2712 0 0 0 2.8426 1 30893 30893 0.13989 0 1 38106 1241 25608 25624 37469 37469 0.21390489652844735 RKVLRKNSRW 10 Unmodified _RKVLRKNSRW_ 0 0 0 ENST00000395951.7_3_8:101960846-101960924:-|nuORF ENST00000395951.7_3_8:101960846-101960924:-|nuORF ENST00000395951.7_3_8:101960846-101960924:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 448.3492431640625 3 448.277467 1341.81057 NaN NaN NaN NaN NaN NaN NaN 54.989 1 51.854 51.354 52.354 -3.1352 0 0 0 0.22588 1 10155 10155 1.7423 0.14999 1 38107 9439 25609 25625 37470 37470 0.1533376507641151 RKVRGLQL 8 Unmodified _RKVRGLQL_ 0 0 0 B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant;ENSG00000179913|ENST00000318683|B3GNT3 B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.2014465332031 3 323.882054 968.624333 NaN NaN NaN NaN NaN NaN NaN 16.473 1 15.257 14.757 15.757 -1.2159 0 0 0 0.2396 1 2595 2595 0.30703 0 1 38108 289 25610 25626 37471 37471 0.1387656790791425 RKWIKKIV 8 Unmodified _RKWIKKIV_ 0 0 0 REV__nc|ENSG00000102001|O60840-5|CACNA1F REV__nc|ENSG00000102001|O60840-5|CACNA1F MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5533752441406 3 357.578083 1069.71242 NaN NaN NaN NaN NaN NaN NaN 71.076 1 67.827 67.327 68.327 -3.2492 0 0 0 0.21486 1 13835 13835 0.45834 0 1 + 38109 14814 25611 25627 37472 37472 0.1803518849849297 RKWKTRRNQYW 11 Unmodified _RKWKTRRNQYW_ 0 0 0 REV__ENSG00000125492|ENST00000263610|BARHL1 REV__ENSG00000125492|ENST00000263610|BARHL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2780151367188 3 541.29893 1620.87496 NaN NaN NaN NaN NaN NaN NaN 106.66 1 106.66 106.16 107.16 0 0 0 0 0.22632 1 20972 20972 0.094841 0.094841 1 + 38110 15818 25612 25628 37473 37473 0.08935920162571165 RKWKTRRNQYW 11 Unmodified _RKWKTRRNQYW_ 0 0 0 REV__ENSG00000125492|ENST00000263610|BARHL1 REV__ENSG00000125492|ENST00000263610|BARHL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2652587890625 3 541.29893 1620.87496 0.70417 0.00038117 -0.56589 -0.00030631 0.13828 7.4851E-05 541.2977823182019 110.94 0.56384 106.71 106.34 106.9 -4.2289 23 15 2 0 0 0 0.66298 2 21293 21293;21361 0.094841 0 1 1825000 + 38111 15818 25612 25628 37474;37475 37474 0.08935920162571165 RKWKTRRNQYW 11 Unmodified _RKWKTRRNQYW_ 0 0 0 REV__ENSG00000125492|ENST00000263610|BARHL1 REV__ENSG00000125492|ENST00000263610|BARHL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3534545898438 2 811.444757 1620.87496 NaN NaN NaN NaN NaN NaN NaN 169.62 1 164.75 164.25 165.25 -4.873 0 0 0 0.23698 1 33512 33512 0 0 1 + 38112 15818 25612 25628 37476 37476 0.08935920162571165 RKWLDEITIHK 11 Unmodified _RKWLDEITIHK_ 0 0 0 REV__STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant REV__STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 480.24481201171875 3 480.277021 1437.80923 0.27589 0.0001325 -0.28181 -0.00013535 -0.005921 -2.8437E-06 480.27696121182885 92.66 0.44832 88.516 88.317 88.765 -4.1435 29 12 3 0 0 0 0.66087 1 17694 17694 1.4551 0 1 1447100 + 38113 15172 25613 25629 37477 37477 0.10784086196963472 RKWLDEITIHK 11 Unmodified _RKWLDEITIHK_ 0 0 0 REV__STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant REV__STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 480.277021 1437.80923 -0.14672 -7.0465E-05 -0.30587 -0.0001469 -0.45259 -0.00021737 480.6111565615075 88.896 0.42088 88.896 88.647 89.068 0 0.21253 -0.0003342 NaN 1.4551 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1157900 + 38114 15172 25613 25629 0.10784086196963472 RKWLDEITIHK 11 Unmodified _RKWLDEITIHK_ 0 0 0 REV__STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant REV__STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 480.277021 1437.80923 0.011248 5.4022E-06 -0.017019 -8.1741E-06 -0.0057713 -2.7718E-06 480.61122914684455 92.644 0.59178 88.719 88.338 88.93 -3.9251 0.035585 8.1985E-05 NaN 1.4551 31 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2476300 + 38115 15172 25613 25629 0.10784086196963472 RKWLDEITIHK 11 Unmodified _RKWLDEITIHK_ 0 0 0 REV__STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant REV__STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 480.277021 1437.80923 0.27589 0.0001325 -0.28181 -0.00013535 -0.005921 -2.8437E-06 480.27696121182885 92.66 0.44832 88.516 88.317 88.765 -4.1435 -0.16718 -0.00029954 NaN 1.4551 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1447100 + 38116 15172 25613 25629 0.10784086196963472 RKWLDEITIHK 11 Unmodified _RKWLDEITIHK_ 0 0 0 REV__STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant REV__STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 480.277021 1437.80923 0.051836 2.4896E-05 0.15216 7.3078E-05 0.20399 9.7973E-05 480.27717435741835 92.411 0.47313 88.602 88.312 88.785 -3.8083 -0.080932 0.00032574 NaN 1.4551 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1535900 + 38117 15172 25613 25629 0.10784086196963472 RKWMYYTSRAT 11 Unmodified _RKWMYYTSRAT_ 0 0 0 REV__ENSG00000133980|ENST00000256362|VRTN REV__ENSG00000133980|ENST00000256362|VRTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 488.24755859375 3 488.246844 1461.7187 NaN NaN NaN NaN NaN NaN NaN 67.051 1 63.724 63.224 64.224 -3.3268 0 0 0 0.22632 1 12637 12637 3.0723 0.57378 1 + 38118 16186 25614 25630 37478 37478 0.0063129387704066176 RKWQKFLNFFR 11 Unmodified _RKWQKFLNFFR_ 0 0 0 tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6922607421875 3 523.964889 1568.87284 0.17236 9.0308E-05 -3.927 -0.0020576 -3.7547 -0.0019673 523.9635205126158 116.86 0.38169 116.86 116.78 117.16 0 14 10 2 0 0 0 0.96201 1 23040 23040 1.1098 0.26481 1 3528700 38119 25880 25615 25631 37479 37479 0.11115491424720858 RKWRLLKRRLL 11 Unmodified _RKWRLLKRRLL_ 0 0 0 REV__ENST00000554413.1_1_12:97295953-97296385:-|nuORF REV__ENST00000554413.1_1_12:97295953-97296385:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 769.518798828125 2 769.517528 1537.0205 NaN NaN NaN NaN NaN NaN NaN 168.34 1 163.39 162.89 163.89 -4.948 0 0 0 0.22632 1 33182 33182 0 0 1 + 38120 22972 25616 25632 37480 37480 0.27347427749396047 RKWRRWPRYRA 11 Unmodified _RKWRRWPRYRA_ 0 0 0 REV__ENST00000284061.7_2_17:54911541-54912223:+|nuORF REV__ENST00000284061.7_2_17:54911541-54912223:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7904052734375 3 544.314915 1629.92291 0.27114 0.00014759 -1.0529 -0.00057313 -0.7818 -0.00042554 544.3143674476943 142.29 0.17245 137.63 137.51 137.68 -4.656 5 4 2 0 0 0 0.96175 1 28120 28120 1.2148 0.10508 1 1507800 + 38121 20325 25617 25633 37481 37481 0.13315038873270169 RKWWIKVVLQK 11 Unmodified _RKWWIKVVLQK_ 0 0 0 REV__ENST00000520594.5_1_8:106799777-107072670:-|nuORF REV__ENST00000520594.5_1_8:106799777-107072670:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3909912109375 2 742.466638 1482.91872 NaN NaN NaN NaN NaN NaN NaN 163.92 1 159.13 158.63 159.63 -4.7898 0 0 0 0.23698 1 32713 32713 0.26902 0.033176 1 + 38122 22636 25618 25634 37482 37482 0.19658136606949483 RKYDKRRKKR 10 Unmodified _RKYDKRRKKR_ 0 0 0 nc|ENSG00000133863|Q9BXT5|TEX15;TEX15|p.S2464Vfs*33|1|0.4|ENSG00000133863|chr8:30837745-30837745|T/-|frameshift_variant;ENSG00000133863|ENST00000643185|TEX15;TEX15|p.T1171Lfs*14|1|0.19|ENSG00000133863|chr8:30845507-30845507|T/-|frameshift_variant;TEX15|p.R1708Gfs*3|1|0.19|ENSG00000133863|chr8:30843896-30843896|T/-|frameshift_variant;TEX15|p.R1708Kfs*6|1|0.41|ENSG00000133863|chr8:30843895-30843896|-/T|frameshift_variant;TEX15|p.K1907Nfs*14|1|0.11|ENSG00000133863|chr8:30843297-30843297|T/-|frameshift_variant nc|ENSG00000133863|Q9BXT5|TEX15 nc|ENSG00000133863|Q9BXT5|TEX15 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7292175292969 3 478.635654 1432.88513 NaN NaN NaN NaN NaN NaN NaN 82.642 1 78.769 78.269 79.269 -3.8736 0 0 0 2.8426 1 15704 15704 0.13989 0.13989 1 38123 3819 25619 25635 37483 37483 0.18600527887770113 RKYEEDEKVVV 11 Unmodified _RKYEEDEKVVV_ 0 0 0 REV__ENSG00000075239|ENST00000265838|ACAT1 REV__ENSG00000075239|ENST00000265838|ACAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2485656738281 3 465.248908 1392.72489 -0.40481 -0.00018834 0.21619 0.00010058 -0.18862 -8.7753E-05 465.24894212397754 106.18 0.59434 101.91 101.66 102.25 -4.2638 28 16 2 0 0 0 0.60781 1 20907 20907 5.4027 5.3968 1 1926200 + 38124 14327 25620 25636 37484 37484 0.0442409058953217 RKYKVWMRHRY 11 Unmodified _RKYKVWMRHRY_ 0 0 0 NOC4L|p.A205Pfs*13|2|0.34|ENSG00000184967|chr12:132147883-132147883|C/-|frameshift_variant;NOC4L|p.A205Rfs*74|1|0.45|ENSG00000184967|chr12:132147882-132147883|-/C|frameshift_variant;NOC4L|p.P381Lfs*103|1|0.35|ENSG00000184967|chr12:132151548-132151548|C/-|frameshift_variant;ENSG00000184967|ENST00000330579|NOC4L NOC4L|p.A205Pfs*13|2|0.34|ENSG00000184967|chr12:132147883-132147883|C/-|frameshift_variant NOC4L|p.A205Pfs*13|2|0.34|ENSG00000184967|chr12:132147883-132147883|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2738647460938 3 541.633145 1621.8776 -0.026651 -1.4435E-05 2.1378 0.0011579 2.1111 0.0011435 541.9688503957734 111.64 0.31435 107.15 106.96 107.27 -4.4915 12 8 2 0 0 0 0.89134 1 21409 21409 0.026206 0.026206 1 1576100 38125 6948 25621 25637 37485 37485 0.0915405229584394 RKYWCEISQQQ 11 Unmodified _RKYWCEISQQQ_ 0 0 0 ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ATM|p.T1609*|1|0.23|ENSG00000149311|chr11:108294972-108294973|-/TG|frameshift_variant;ATM|p.G1642Wfs*23|1|0.78|ENSG00000149311|chr11:108297299-108297300|-/T|frameshift_variant;ATM|p.F627Sfs*22|1|0.4|ENSG00000149311|chr11:108252889-108252889|T/-|frameshift_variant;ATM|p.C1838Vfs*8|1|0.42|ENSG00000149311|chr11:108304687-108304687|T/-|frameshift_variant;ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant;ATM|p.I1581Sfs*20|1|0.25|ENSG00000149311|chr11:108293437-108293437|A/-|frameshift_variant;ATM|p.P1587Ffs*13|1|0.08|ENSG00000149311|chr11:108293459-108293462|ACCC/-|frameshift_variant;ATM|p.V1446Cfs*2|1|0.25|ENSG00000149311|chr11:108289697-108289698|-/T|frameshift_variant;ATM|p.K1170Nfs*11|1|0.26|ENSG00000149311|chr11:108281098-108281098|A/-|frameshift_variant;ATM|p.W1026Lfs*22|1|0.36|ENSG00000149311|chr11:108271401-108271402|-/T|frameshift_variant;ATM|p.S214Pfs*16|1|0.39|ENSG00000149311|chr11:108244090-108244090|T/-|frameshift_variant ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2595520019531 3 490.238237 1467.69288 NaN NaN NaN NaN NaN NaN NaN 88.187 1 84.192 83.692 84.692 -3.9953 0 0 0 0.22632 1 16796 16796 0.0059557 0 1 38126 258 25622 25638 37486 37486 -0.022256003652273648 RKYWFRLARWS 11 Unmodified _RKYWFRLARWS_ 0 0 0 REV__ENST00000527483.5_1_10:127395624-127396187:-|nuORF REV__ENST00000527483.5_1_10:127395624-127396187:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3839721679688 2 784.933494 1567.85244 NaN NaN NaN NaN NaN NaN NaN 173.32 1 173.32 172.82 173.82 0 0 0 0 0.23698 1 35833 35833 2.086 1.1237 1 + 38127 22708 25623 25639 37487 37487 0.09122320764936376 RKYYQLPNRW 10 Unmodified _RKYYQLPNRW_ 0 0 0 REV__ENSG00000258992|ENST00000451548|TSPY1 REV__ENSG00000258992|ENST00000451548|TSPY1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 475.2566223144531 3 475.257961 1422.75205 NaN NaN NaN NaN NaN NaN NaN 126.61 1 126.61 126.11 127.11 0 0 0 0 2.8426 1 24988 24988 0.84494 0 1 + 38128 18050 25624 25640 37488 37488 0.057586637112535755 RLAAELATL 9 Unmodified _RLAAELATL_ 0 0 0 nc|ENSG00000130244|Q17RN3-2|FAM98C;ENST00000589029.1_3_19:38893832-38894179:+|nuORF;ENSG00000130244|ENST00000252530|FAM98C nc|ENSG00000130244|Q17RN3-2|FAM98C nc|ENSG00000130244|Q17RN3-2|FAM98C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7278137207031 2 479.290017 956.565481 0.44869 0.00021505 -0.28785 -0.00013796 0.16084 7.7089E-05 479.28972162694873 117.08 0.60392 112.72 112.34 112.94 -4.3585 25 16 2 0 0 0 0.58921 1 22503 22503 8.1555 1.9497 1 1305500 38129 12319 25625 25641 37489 37489 0.0854604682289164 RLAAELATL 9 Unmodified _RLAAELATL_ 0 0 0 nc|ENSG00000130244|Q17RN3-2|FAM98C;ENST00000589029.1_3_19:38893832-38894179:+|nuORF;ENSG00000130244|ENST00000252530|FAM98C nc|ENSG00000130244|Q17RN3-2|FAM98C nc|ENSG00000130244|Q17RN3-2|FAM98C MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.290017 956.565481 -0.068924 -3.3035E-05 0.010455 5.0108E-06 -0.058469 -2.8024E-05 479.29005782398 112.97 0.34035 112.97 112.83 113.17 0 0.21233 0.00018449 NaN 8.1555 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1530900 38130 12319 25625 25641 0.0854604682289164 RLAAELATL 9 Unmodified _RLAAELATL_ 0 0 0 nc|ENSG00000130244|Q17RN3-2|FAM98C;ENST00000589029.1_3_19:38893832-38894179:+|nuORF;ENSG00000130244|ENST00000252530|FAM98C nc|ENSG00000130244|Q17RN3-2|FAM98C nc|ENSG00000130244|Q17RN3-2|FAM98C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.290017 956.565481 0.36996 0.00017732 -0.20377 -9.7667E-05 0.16619 7.9651E-05 479.28986290706234 117.32 0.51981 112.71 112.3 112.82 -4.6106 -0.049624 -2.0865E-05 NaN 8.1555 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 946160 38131 12319 25625 25641 0.0854604682289164 RLAALTKSLIK 11 Unmodified _RLAALTKSLIK_ 0 0 0 REV__nc|ENSG00000095319|Q5SRE5-2|NUP188 REV__nc|ENSG00000095319|Q5SRE5-2|NUP188 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 607.4067993164062 2 607.403173 1212.79179 NaN NaN NaN NaN NaN NaN NaN 164.01 1 158.95 158.45 159.45 -5.0648 0 0 0 0.23018 1 31952 31952 8.1555 2.4237 1 + 38132 14606 25626 25642 37490 37490 0.19390790661964274 RLAASTVVV 9 Unmodified _RLAASTVVV_ 0 0 0 ENSG00000109674|ENST00000264596|NEIL3 ENSG00000109674|ENST00000264596|NEIL3 ENSG00000109674|ENST00000264596|NEIL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23944091796875 2 458.284734 914.554916 -0.16517 -7.5694E-05 0.3116 0.0001428 0.14643 6.7106E-05 458.28487249003115 74.784 0.49894 71.42 71.199 71.698 -3.3643 23 13 2 0 0 0 0.44932 1 14617 14617 22.736 0 1 2069300 38133 2536 25627 25643 37491 37491 0.09422064168472843 RLAASTVVV 9 Unmodified _RLAASTVVV_ 0 0 0 ENSG00000109674|ENST00000264596|NEIL3 ENSG00000109674|ENST00000264596|NEIL3 ENSG00000109674|ENST00000264596|NEIL3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.284734 914.554916 0.16436 7.5325E-05 0.12044 5.5194E-05 0.2848 0.00013052 458.28475322667686 71.808 0.59896 71.808 71.49 72.089 0 0.25622 6.2803E-05 NaN 22.736 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2694200 38134 2536 25627 25643 0.09422064168472843 RLADLKVSI 9 Unmodified _RLADLKVSI_ 0 0 0 FANCA|p.V925Rfs*18|1|0.2|ENSG00000187741|chr16:89764895-89764896|-/G|frameshift_variant;FANCA|p.G972Afs*17|1|0.37|ENSG00000187741|chr16:89758643-89758643|C/-|frameshift_variant;nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA;FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant FANCA|p.V925Rfs*18|1|0.2|ENSG00000187741|chr16:89764895-89764896|-/G|frameshift_variant FANCA|p.V925Rfs*18|1|0.2|ENSG00000187741|chr16:89764895-89764896|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.2745056152344 2 507.818941 1013.62333 0.40074 0.0002035 -0.60726 -0.00030838 -0.20652 -0.00010488 507.81846692519457 107 0.38297 107 106.72 107.1 0 14 10 2 0 0 0 0.10537 1 21046 21046 29.082 11.969 1 1369300 38135 7125 25628 25644 37492 37492 0.1170630874833023 RLAEAKPKVEA 11 Unmodified _RLAEAKPKVEA_ 0 0 0 ENSG00000146122|ENST00000274867|DAAM2;nc|ENSG00000146122|Q86T65-4|DAAM2 ENSG00000146122|ENST00000274867|DAAM2 ENSG00000146122|ENST00000274867|DAAM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 404.28363037109375 3 404.575067 1210.70337 -0.29393 -0.00011892 0.2239 9.0583E-05 -0.070031 -2.8333E-05 404.5751627650489 57.627 0.5293 54.733 54.519 55.048 -2.8944 22 14 2 0 0 0 0.88957 1 11089 11089 3.0723 0 1 897680 38136 4641 25629 25645 37493 37493 0.10644750351502807 RLAEAKPKVEA 11 Unmodified _RLAEAKPKVEA_ 0 0 0 ENSG00000146122|ENST00000274867|DAAM2;nc|ENSG00000146122|Q86T65-4|DAAM2 ENSG00000146122|ENST00000274867|DAAM2 ENSG00000146122|ENST00000274867|DAAM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 404.575067 1210.70337 -0.095028 -3.8446E-05 -0.12506 -5.0595E-05 -0.22009 -8.9041E-05 404.5750189080609 54.939 0.39153 54.939 54.694 55.086 0 0.079455 -0.00017649 NaN 3.0723 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 706130 38137 4641 25629 25645 0.10644750351502807 RLAEAKPKVEA 11 Unmodified _RLAEAKPKVEA_ 0 0 0 ENSG00000146122|ENST00000274867|DAAM2;nc|ENSG00000146122|Q86T65-4|DAAM2 ENSG00000146122|ENST00000274867|DAAM2 ENSG00000146122|ENST00000274867|DAAM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 404.575067 1210.70337 0.059804 2.4195E-05 -0.25518 -0.00010324 -0.19538 -7.9044E-05 404.5749627538199 58.062 0.56619 54.81 54.465 55.032 -3.2517 -0.049651 -0.00033442 NaN 3.0723 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1211100 38138 4641 25629 25645 0.10644750351502807 RLAEAKPKVEA 11 Unmodified _RLAEAKPKVEA_ 0 0 0 ENSG00000146122|ENST00000274867|DAAM2;nc|ENSG00000146122|Q86T65-4|DAAM2 ENSG00000146122|ENST00000274867|DAAM2 ENSG00000146122|ENST00000274867|DAAM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 404.575067 1210.70337 -0.41056 -0.0001661 0.30994 0.00012539 -0.10061 -4.0706E-05 404.5751094083066 58.162 0.35165 54.957 54.709 55.061 -3.2052 0.097261 0.00035148 NaN 3.0723 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 544740 38139 4641 25629 25645 0.10644750351502807 RLAEINREFL 10 Unmodified _RLAEINREFL_ 0 0 0 nc|ENSG00000126878|Q9BQI0-4|AIF1L;nc|ENSG00000126878|Q9BQI0-3|AIF1L;ENSG00000126878|ENST00000247291|AIF1L nc|ENSG00000126878|Q9BQI0-4|AIF1L nc|ENSG00000126878|Q9BQI0-4|AIF1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7586059570312 2 630.856586 1259.69862 0.48276 0.00030455 -0.16903 -0.00010663 0.31373 0.00019792 630.8565599001412 109.16 0.80722 104.79 104.26 105.07 -4.3776 49 22 3 0 0 0 0.47576 1 21521 21521 25.997 2.2076 1 3503200 38140 3453 25630 25646 37494 37494 0.07915866208759326 RLAEINREFL 10 Unmodified _RLAEINREFL_ 0 0 0 nc|ENSG00000126878|Q9BQI0-4|AIF1L;nc|ENSG00000126878|Q9BQI0-3|AIF1L;ENSG00000126878|ENST00000247291|AIF1L nc|ENSG00000126878|Q9BQI0-4|AIF1L nc|ENSG00000126878|Q9BQI0-4|AIF1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7794799804688 2 630.856586 1259.69862 0.06908 4.358E-05 0.34626 0.00021844 0.41534 0.00026202 630.8568139735781 109.29 0.65795 104.84 104.43 105.09 -4.4518 47 18 3 0 0 0 0.1027 1 20962 20962 59.013 15.241 1 4769100 38141 3453 25630 25646 37495 37495 0.07915866208759326 RLAEINREFL 10 Unmodified _RLAEINREFL_ 0 0 0 nc|ENSG00000126878|Q9BQI0-4|AIF1L;nc|ENSG00000126878|Q9BQI0-3|AIF1L;ENSG00000126878|ENST00000247291|AIF1L nc|ENSG00000126878|Q9BQI0-4|AIF1L nc|ENSG00000126878|Q9BQI0-4|AIF1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.778564453125 2 630.856586 1259.69862 0.9039 0.00057023 -0.67606 -0.0004265 0.22784 0.00014373 630.8563478179485 108.98 0.59575 104.79 104.49 105.09 -4.1826 39 16 3 0 0 0 0.26536 1 20953 20953 39.923 11.428 1 4349300 38142 3453 25630 25646 37496 37496 0.07915866208759326 RLAEINREFL 10 Unmodified _RLAEINREFL_ 0 0 0 nc|ENSG00000126878|Q9BQI0-4|AIF1L;nc|ENSG00000126878|Q9BQI0-3|AIF1L;ENSG00000126878|ENST00000247291|AIF1L nc|ENSG00000126878|Q9BQI0-4|AIF1L nc|ENSG00000126878|Q9BQI0-4|AIF1L MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 630.856586 1259.69862 0.68896 0.00043463 -0.37887 -0.00023901 0.31008 0.00019562 630.8563540873969 105.04 0.55765 105.04 104.76 105.32 0 0.175 -0.00023611 NaN 59.013 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3341400 38143 3453 25630 25646 0.07915866208759326 RLAEINREFL 10 Unmodified _RLAEINREFL_ 0 0 0 nc|ENSG00000126878|Q9BQI0-4|AIF1L;nc|ENSG00000126878|Q9BQI0-3|AIF1L;ENSG00000126878|ENST00000247291|AIF1L nc|ENSG00000126878|Q9BQI0-4|AIF1L nc|ENSG00000126878|Q9BQI0-4|AIF1L MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 630.856586 1259.69862 0.48276 0.00030455 -0.16903 -0.00010663 0.31373 0.00019792 630.8565599001412 109.16 0.80722 104.79 104.26 105.07 -4.3776 -0.077977 2.8654E-05 NaN 59.013 49 22 3 NaN NaN NaN NaN 0 NaN NaN 0 3503200 38144 3453 25630 25646 0.07915866208759326 RLAEPSQML 9 Unmodified _RLAEPSQML_ 0 0 0 CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant;ENSG00000168036|ENST00000349496|CTNNB1 CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2777099609375 2 522.778959 1043.54336 -0.39049 -0.00020414 0.41176 0.00021526 0.021266 1.1117E-05 522.779148206546 92.543 0.55476 88.449 88.117 88.672 -4.0946 24 15 2 0 0 0 0.60663 1 17636 17636 26.268 0 1 1444700 38145 744 25631 25647 37497 37497 0.023334990828288937 RLAETFEEK 9 Unmodified _RLAETFEEK_ 0 0 0 REV__ENSG00000134900|ENST00000376052|TPP2 REV__ENSG00000134900|ENST00000376052|TPP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2054138183594 3 374.864506 1121.57169 0.2088 7.827E-05 -0.44305 -0.00016608 -0.23426 -8.7814E-05 374.86427004348246 64.606 0.53177 61.148 60.872 61.404 -3.4581 35 14 3 0 0 0 0.75905 1 12129 12129 3.5871 0.26742 1 3226000 + 38146 16236 25632 25648 37498 37498 0.0157652026375672 RLAEVEEKL 9 Unmodified _RLAEVEEKL_ 0 0 0 CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant;CENPE|p.S2121Efs*18|1|0.05|ENSG00000138778|chr4:103136302-103136303|-/TGCTC|frameshift_variant;CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant;nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7810668945312 2 543.811313 1085.60807 0.031879 1.7336E-05 0.03858 2.098E-05 0.070458 3.8316E-05 543.8113348845287 59.513 0.47166 59.513 59.176 59.648 0 18 12 2 0 0 0 0.45972 1 11365 11365 8.1555 8.1423 1 1510700 38147 483 25633 25649 37499 37499 0.06869397160471635 RLAEVEEKL 9 Unmodified _RLAEVEEKL_ 0 0 0 CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant;CENPE|p.S2121Efs*18|1|0.05|ENSG00000138778|chr4:103136302-103136303|-/TGCTC|frameshift_variant;CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant;nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7858276367188 2 543.811313 1085.60807 0.16144 8.7791E-05 0.35672 0.00019399 0.51816 0.00028178 543.8113503408806 62.683 0.44779 59.268 58.985 59.433 -3.4158 22 12 3 0 0 0 0.25976 1 11730 11730 17.113 7.039 1 1207200 38148 483 25633 25649 37500 37500 0.06869397160471635 RLAEVVHEL 9 Unmodified _RLAEVVHEL_ 0 0 0 ENST00000582887.1_1_7:86811523-86815316:+|nuORF;ENST00000425406.5_1_7:86811523-86817410:+|nuORF;DMTF1|p.N415Tfs*28|1|0.3|ENSG00000135164|chr7:87188128-87188128|A/-|frameshift_variant;ENST00000447863.5_1_7:86811523-86824453:+|nuORF;nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1 ENST00000582887.1_1_7:86811523-86815316:+|nuORF ENST00000582887.1_1_7:86811523-86815316:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2775268554688 2 533.306198 1064.59784 0.081549 4.3491E-05 0.28995 0.00015463 0.37149 0.00019812 533.3059609387752 82.088 0.87265 78.531 78.136 79.009 -3.557 80 24 5 0 0 0 0.015957 2 16038 16034;16038 96.367 42.534 1 13210000 38149 856 25634 25650 37501;37502 37502 0.06812834225888764 RLAEVVHEL 9 Unmodified _RLAEVVHEL_ 0 0 0 ENST00000582887.1_1_7:86811523-86815316:+|nuORF;ENST00000425406.5_1_7:86811523-86817410:+|nuORF;DMTF1|p.N415Tfs*28|1|0.3|ENSG00000135164|chr7:87188128-87188128|A/-|frameshift_variant;ENST00000447863.5_1_7:86811523-86824453:+|nuORF;nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1 ENST00000582887.1_1_7:86811523-86815316:+|nuORF ENST00000582887.1_1_7:86811523-86815316:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825927734375 2 533.306198 1064.59784 -0.077148 -4.1143E-05 1.043 0.00055623 0.96583 0.00051508 533.3061157656242 82.41 0.96484 78.711 78.246 79.211 -3.6985 77 27 4 0 0 0 0.010502 1 15723 15723 103.42 49.587 1 14870000 38150 856 25634 25650 37503 37503 0.06812834225888764 RLAHKGISQA 10 Unmodified _RLAHKGISQA_ 0 0 0 ENST00000454738.5_1_7:6456256-6487444:-|nuORF;ENST00000462934.5_1_7:6449470-6461666:-|nuORF;nc|ENSG00000164535|Q8NCG7-2|DAGLB;nc|ENSG00000164535|Q8NCG7-4|DAGLB;DAGLB|p.E562Gfs*56|1|0.32|ENSG00000164535|chr7:6410265-6410266|-/C|frameshift_variant;ENSG00000164535|ENST00000297056|DAGLB ENST00000454738.5_1_7:6456256-6487444:-|nuORF ENST00000454738.5_1_7:6456256-6487444:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2738647460938 2 540.817264 1079.61998 0.17145 9.2726E-05 0.3366 0.00018204 0.50806 0.00027476 540.8175046917103 13.982 0.13759 13.982 13.898 14.036 0 6 3 2 0 0 0 0.47611 1 2056 2056 7.8089 4.7366 1 823940 38151 780 25635 25651 37504 37504 0.08335058694342479 RLAHKGISQA 10 Unmodified _RLAHKGISQA_ 0 0 0 ENST00000454738.5_1_7:6456256-6487444:-|nuORF;ENST00000462934.5_1_7:6449470-6461666:-|nuORF;nc|ENSG00000164535|Q8NCG7-2|DAGLB;nc|ENSG00000164535|Q8NCG7-4|DAGLB;DAGLB|p.E562Gfs*56|1|0.32|ENSG00000164535|chr7:6410265-6410266|-/C|frameshift_variant;ENSG00000164535|ENST00000297056|DAGLB ENST00000454738.5_1_7:6456256-6487444:-|nuORF ENST00000454738.5_1_7:6456256-6487444:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.007568359375 3 360.880602 1079.61998 -0.91626 -0.00033066 1.127 0.00040672 0.21076 7.6059E-05 360.8810139562785 14.876 0.13905 13.762 13.641 13.78 -1.1142 7 3 3 0 0 0 0.91149 1 2248 2248 1.7423 1.1154 1 684940 38152 780 25635 25651 37505 37505 0.08335058694342479 RLAHKGISQA 10 Unmodified _RLAHKGISQA_ 0 0 0 ENST00000454738.5_1_7:6456256-6487444:-|nuORF;ENST00000462934.5_1_7:6449470-6461666:-|nuORF;nc|ENSG00000164535|Q8NCG7-2|DAGLB;nc|ENSG00000164535|Q8NCG7-4|DAGLB;DAGLB|p.E562Gfs*56|1|0.32|ENSG00000164535|chr7:6410265-6410266|-/C|frameshift_variant;ENSG00000164535|ENST00000297056|DAGLB ENST00000454738.5_1_7:6456256-6487444:-|nuORF ENST00000454738.5_1_7:6456256-6487444:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2589721679688 2 540.817264 1079.61998 -1.526 -0.0008253 1.1789 0.00063759 -0.34709 -0.00018771 540.8180193555696 14.92 0.23469 13.709 13.583 13.818 -1.2106 9 6 2 0 0 0 0.8821 1 2010 2010 14.405 8.6735 1 313480 38153 780 25635 25651 37506 37506 0.08335058694342479 RLAHYIDRV 9 Unmodified _RLAHYIDRV_ 0 0 0 LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant;ENSG00000176619|ENST00000325327|LMNB2 LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.211181640625 3 381.552485 1141.63563 -0.2694 -0.00010279 -0.0095873 -3.658E-06 -0.27899 -0.00010645 381.55246492225893 46.93 0.69068 44.089 43.798 44.489 -2.8409 69 19 4 0 0 0 0.041889 1 8860 8860 74.772 42.734 1 33528000 38154 6476 25636 25652 37507 37507 0.07047345211344691 RLAHYIDRV 9 Unmodified _RLAHYIDRV_ 0 0 0 LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant;ENSG00000176619|ENST00000325327|LMNB2 LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21673583984375 3 381.552485 1141.63563 -0.0029278 -1.1171E-06 -0.31799 -0.00012133 -0.32092 -0.00012245 381.552334989475 47.029 0.89681 44.087 43.754 44.651 -2.9421 82 25 4 0 0 0 0.52347 1 8619 8619 38.615 20.242 1 33694000 38155 6476 25636 25652 37508 37508 0.07047345211344691 RLAHYIDRV 9 Unmodified _RLAHYIDRV_ 0 0 0 LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant;ENSG00000176619|ENST00000325327|LMNB2 LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21722412109375 3 381.552485 1141.63563 -0.76644 -0.00029244 0.43003 0.00016408 -0.33641 -0.00012836 381.55262990627637 47.02 1.2795 44.07 43.67 44.949 -2.9499 99 36 4 0 0 0 0.081606 1 8584 8584 73.196 36.122 1 32615000 38156 6476 25636 25652 37509 37509 0.07047345211344691 RLAHYIDRV 9 Unmodified _RLAHYIDRV_ 0 0 0 LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant;ENSG00000176619|ENST00000325327|LMNB2 LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 381.552485 1141.63563 0.13812 5.2701E-05 -0.47426 -0.00018096 -0.33614 -0.00012826 381.5522904963872 43.989 0.85468 43.989 43.604 44.459 0 -0.069852 -0.00048997 NaN 74.772 83 24 4 NaN NaN NaN NaN 0 NaN NaN 0 32455000 38157 6476 25636 25652 0.07047345211344691 RLAKIKFK 8 Unmodified _RLAKIKFK_ 0 0 0 REV__tr|U7T2H7|U7T2H7_FUSNUDNAintegrityscanningproteinDisAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=disAPE=3SV=1 REV__tr|U7T2H7|U7T2H7_FUSNUDNAintegrityscanningproteinDisAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=disAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 335.2309265136719 3 335.230683 1002.67022 NaN NaN NaN NaN NaN NaN NaN 101.45 1 97.463 96.963 97.963 -3.9895 0 0 0 0.21486 1 19493 19493 0 0 1 + 38158 25328 25637 25653 37510 37510 0.1689921309014153 RLAKKLQQL 9 Unmodified _RLAKKLQQL_ 0 0 0 ENSG00000180611|ENST00000392452|MB21D2 ENSG00000180611|ENST00000392452|MB21D2 ENSG00000180611|ENST00000392452|MB21D2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 366.1949157714844 3 366.576631 1096.70806 -0.16887 -6.1902E-05 0.48744 0.00017868 0.31857 0.00011678 366.9111722117161 29.155 0.17301 29.155 29.09 29.263 0 6 4 2 0 0 0 0.58921 1 5202 5202 8.1555 5.657 1 798870 38159 6682 25638 25654 37511 37511 0.16357679284942606 RLALHAEP 8 Unmodified _RLALHAEP_ 0 0 0 ENST00000336985.10_2_22:45098108-45098258:+|nuORF ENST00000336985.10_2_22:45098108-45098258:+|nuORF ENST00000336985.10_2_22:45098108-45098258:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7602844238281 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 150.66 1 145.54 145.04 146.04 -5.1204 0 0 0 0.23782 1 29201 29201 0.12286 0 1 38160 8812 25639 25655 37512 37512 0.051766243371730525 RLAPEIVSA 9 Unmodified _RLAPEIVSA_ 0 0 0 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72344970703125 2 478.282192 954.549831 0.35005 0.00016742 0.059161 2.8296E-05 0.40921 0.00019572 478.2822063958982 79.823 0.97308 79.823 79.411 80.384 0 66 27 3 0 0 0 0.64397 1 15522 15522 31.268 3.6395 1 11708000 38161 8023 25640 25656 37513 37513 0.07073760305854648 RLAPEIVSA 9 Unmodified _RLAPEIVSA_ 0 0 0 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7236328125 2 478.282192 954.549831 -0.0080081 -3.8301E-06 0.49799 0.00023818 0.48998 0.00023435 478.2823864288916 83.275 1.191 79.667 79.231 80.422 -3.6079 77 33 3 0 0 0 0.14998 1 16298 16298 60.074 18.234 1 15004000 38162 8023 25640 25656 37514 37514 0.07073760305854648 RLAPEIVSA 9 Unmodified _RLAPEIVSA_ 0 0 0 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72393798828125 2 478.282192 954.549831 0.11843 5.6645E-05 0.31505 0.00015068 0.43349 0.00020733 478.28232087794737 83.598 0.91858 79.724 79.26 80.178 -3.8736 62 25 3 0 0 0 0.089388 1 15867 15867 66.457 26.507 1 14240000 38163 8023 25640 25656 37515 37515 0.07073760305854648 RLAPEIVSA 9 Unmodified _RLAPEIVSA_ 0 0 0 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7240905761719 2 478.282192 954.549831 -0.069509 -3.3245E-05 0.67936 0.00032493 0.60985 0.00029168 478.2824642076547 83.407 1.2211 79.708 79.246 80.467 -3.6985 80 34 3 0 0 0 0.11402 1 15913 15913 69.105 25.247 1 15803000 38164 8023 25640 25656 37516 37516 0.07073760305854648 RLAPGLTRL 9 Unmodified _RLAPGLTRL_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.4909973144531 3 332.881943 995.623999 0.24958 8.308E-05 0.21463 7.1446E-05 0.4642 0.00015453 332.8818428326467 65.958 1.2278 62.5 61.75 62.978 -3.4581 62 34 2 0 0 0 0.45972 1 12232 12232 8.1555 0 1 4102000 + 38165 13904 25641 25657 37517 37517 0.1260114818803686 RLAPLLLLLK 10 Unmodified _RLAPLLLLLK_ 0 0 0 REV__NR2E1|p.T366Nfs*19|1|0.1|ENSG00000112333|chr6:108187394-108187395|-/A|frameshift_variant REV__NR2E1|p.T366Nfs*19|1|0.1|ENSG00000112333|chr6:108187394-108187395|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 575.427001953125 2 575.407727 1148.8009 NaN NaN NaN NaN NaN NaN NaN 171.15 1 171.15 170.65 171.65 0 0 0 0 2.8426 1 35244 35244 0.043787 0 1 + 38166 15294 25642 25658 37518 37518 0.23245184018310283 RLAQYKKRYKD 11 Unmodified _RLAQYKKRYKD_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2613220214844 3 490.284287 1467.83103 NaN NaN NaN NaN NaN NaN NaN 73.077 1 69.449 68.949 69.949 -3.6275 0 0 0 0.22632 1 13809 13809 1.4551 0.8698 1 38167 5449 25643 25659 37519 37519 0.11582890945533109 RLAREVLDV 9 Unmodified _RLAREVLDV_ 0 0 0 ENSG00000164024|ENST00000296411|METAP1 ENSG00000164024|ENST00000296411|METAP1 ENSG00000164024|ENST00000296411|METAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5487365722656 3 357.548741 1069.62439 -0.26252 -9.3863E-05 0.34601 0.00012371 0.083489 2.9851E-05 357.54879525240335 73.102 0.42534 73.102 72.816 73.241 0 17 11 2 0 0 0 0.6748 1 14149 14149 7.9454 0.46833 1 977590 38168 5496 25644 25660 37520 37520 0.09236523117237994 RLAREVLDV 9 Unmodified _RLAREVLDV_ 0 0 0 ENSG00000164024|ENST00000296411|METAP1 ENSG00000164024|ENST00000296411|METAP1 ENSG00000164024|ENST00000296411|METAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.54840087890625 3 357.548741 1069.62439 -0.30575 -0.00010932 0.022915 8.1933E-06 -0.28284 -0.00010113 357.54873532620655 76.159 0.70627 72.744 72.439 73.145 -3.4151 26 19 2 0 0 0 0.56137 1 14843 14843 15.739 2.866 1 1465000 38169 5496 25644 25660 37521 37521 0.09236523117237994 RLAREVLDV 9 Unmodified _RLAREVLDV_ 0 0 0 ENSG00000164024|ENST00000296411|METAP1 ENSG00000164024|ENST00000296411|METAP1 ENSG00000164024|ENST00000296411|METAP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5484619140625 3 357.548741 1069.62439 NaN NaN NaN NaN NaN NaN NaN 76.641 1 72.918 72.418 73.418 -3.7227 0 0 0 0.22658 1 14516 14516 15.739 5.5881 1 38170 5496 25644 25660 37522 37522 0.09236523117237994 RLAREVLDV 9 Unmodified _RLAREVLDV_ 0 0 0 ENSG00000164024|ENST00000296411|METAP1 ENSG00000164024|ENST00000296411|METAP1 ENSG00000164024|ENST00000296411|METAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5486145019531 3 357.548741 1069.62439 -0.51348 -0.00018359 0.48728 0.00017423 -0.026201 -9.368E-06 357.54881451805755 76.456 0.66376 72.822 72.477 73.141 -3.6337 24 18 2 0 0 0 0.56137 1 14570 14570 15.739 4.2207 1 808370 38171 5496 25644 25660 37523 37523 0.09236523117237994 RLARLRRFAR 10 Unmodified _RLARLRRFAR_ 0 0 0 REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1 REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 439.2640380859375 3 438.949573 1313.82689 -0.71328 -0.00031309 -0.27605 -0.00012117 -0.98933 -0.00043427 438.94948785754775 11.981 0.13448 10.851 10.735 10.869 -1.1293 5 3 2 0 0 0 1.1344 1 1443 1443 0.69767 0 1 284690 + 38172 16093 25645 25661 37524 37524 0.1825289103317118 RLASFHNFT 9 Unmodified _RLASFHNFT_ 0 0 0 REV__ENSG00000196350|ENST00000601693|ZNF729 REV__ENSG00000196350|ENST00000601693|ZNF729 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.769775390625 2 546.78289 1091.55123 0.52441 0.00028674 -0.86474 -0.00047283 -0.34033 -0.00018609 546.7824047300526 83.018 0.58318 83.018 82.67 83.253 0 37 16 3 0 0 0 0.46541 1 16188 16188 21.747 2.4897 1 12251000 + 38173 19236 25646 25662 37525 37525 0.009113943946204017 RLASYLDKV 9 Unmodified _RLASYLDKV_ 0 0 0 CON__Q04695;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;ENSG00000128422|ENST00000311208|KRT17;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENSG00000171346|ENST00000254043|KRT15;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;KRT10|p.R165W|1|0.16|ENSG00000186395|chr17:40822093-40822093|G/A|missense_variant;CON__A2A4G1;CON__Q9QWL7;KRT12|p.G291Efs*75|1|0.45|ENSG00000187242|chr17:40863802-40863802|G/-|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;CON__P35527;CON__P19001;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P08730-1;CON__P13645;ENSG00000186395|ENST00000269576|KRT10;CON__P19012;ENSG00000171403|ENST00000246662|KRT9 CON__Q04695;CON__P19001;ENSG00000171345|ENST00000361566|KRT19;CON__P08730-1;CON__P13645;CON__P19012;ENSG00000171403|ENST00000246662|KRT9 CON__P13645 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2739868164062 2 532.808574 1063.60259 0.40578 0.00021621 -0.39362 -0.00020972 0.012166 6.4819E-06 532.8083171200971 81.386 0.97919 81.386 80.984 81.963 0 91 27 5 0 0 0 0.17734 1 15926 15926 40.239 12.61 1 116160000 + 38174 664;678;652;661;662;667;6142 25647 25663 37526 37526 0.07333718368658992 RLASYLDKV 9 Unmodified _RLASYLDKV_ 0 0 0 CON__Q04695;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;ENSG00000128422|ENST00000311208|KRT17;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENSG00000171346|ENST00000254043|KRT15;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;KRT10|p.R165W|1|0.16|ENSG00000186395|chr17:40822093-40822093|G/A|missense_variant;CON__A2A4G1;CON__Q9QWL7;KRT12|p.G291Efs*75|1|0.45|ENSG00000187242|chr17:40863802-40863802|G/-|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;CON__P35527;CON__P19001;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P08730-1;CON__P13645;ENSG00000186395|ENST00000269576|KRT10;CON__P19012;ENSG00000171403|ENST00000246662|KRT9 CON__Q04695;CON__P19001;ENSG00000171345|ENST00000361566|KRT19;CON__P08730-1;CON__P13645;CON__P19012;ENSG00000171403|ENST00000246662|KRT9 CON__P13645 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.267822265625 2 532.808574 1063.60259 0.034384 1.832E-05 -0.15666 -8.3471E-05 -0.12228 -6.5151E-05 532.8084628716833 84.78 0.96573 81.116 80.744 81.709 -3.6641 98 27 5 0 0 0 1.5584E-10 1 16594 16594 162.31 69.661 1 75193000 + 38175 664;678;652;661;662;667;6142 25647 25663 37527 37527 0.07333718368658992 RLASYLDKV 9 Unmodified _RLASYLDKV_ 0 0 0 CON__Q04695;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;ENSG00000128422|ENST00000311208|KRT17;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENSG00000171346|ENST00000254043|KRT15;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;KRT10|p.R165W|1|0.16|ENSG00000186395|chr17:40822093-40822093|G/A|missense_variant;CON__A2A4G1;CON__Q9QWL7;KRT12|p.G291Efs*75|1|0.45|ENSG00000187242|chr17:40863802-40863802|G/-|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;CON__P35527;CON__P19001;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P08730-1;CON__P13645;ENSG00000186395|ENST00000269576|KRT10;CON__P19012;ENSG00000171403|ENST00000246662|KRT9 CON__Q04695;CON__P19001;ENSG00000171345|ENST00000361566|KRT19;CON__P08730-1;CON__P13645;CON__P19012;ENSG00000171403|ENST00000246662|KRT9 CON__P13645 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2678833007812 2 532.808574 1063.60259 0.58909 0.00031387 -0.63685 -0.00033932 -0.047757 -2.5445E-05 532.8081703881933 85.11 1.5284 81.201 80.283 81.812 -3.9093 106 43 4 0 0 0 0.10265 1 16237 16237 72.968 43.886 1 62938000 + 38176 664;678;652;661;662;667;6142 25647 25663 37528 37528 0.07333718368658992 RLASYLDKV 9 Unmodified _RLASYLDKV_ 0 0 0 CON__Q04695;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;ENSG00000128422|ENST00000311208|KRT17;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENSG00000171346|ENST00000254043|KRT15;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;KRT10|p.R165W|1|0.16|ENSG00000186395|chr17:40822093-40822093|G/A|missense_variant;CON__A2A4G1;CON__Q9QWL7;KRT12|p.G291Efs*75|1|0.45|ENSG00000187242|chr17:40863802-40863802|G/-|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;CON__P35527;CON__P19001;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P08730-1;CON__P13645;ENSG00000186395|ENST00000269576|KRT10;CON__P19012;ENSG00000171403|ENST00000246662|KRT9 CON__Q04695;CON__P19001;ENSG00000171345|ENST00000361566|KRT19;CON__P08730-1;CON__P13645;CON__P19012;ENSG00000171403|ENST00000246662|KRT9 CON__P13645 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2871704101562 2 532.808574 1063.60259 0.05756 3.0669E-05 -0.17311 -9.2237E-05 -0.11555 -6.1568E-05 532.8084582949795 84.809 1.1033 81.097 80.767 81.87 -3.7117 110 31 5 0 0 0 0.00086817 1 16245 16245 124.95 42.424 1 87353000 + 38177 664;678;652;661;662;667;6142 25647 25663 37529 37529 0.07333718368658992 RLATLKSTV 9 Unmodified _RLATLKSTV_ 0 0 0 ENST00000495744.5_1_3:142315288-142364209:+|nuORF;ENST00000483373.5_1_3:142315288-142364209:+|nuORF ENST00000495744.5_1_3:142315288-142364209:+|nuORF ENST00000495744.5_1_3:142315288-142364209:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 494.74078369140625 2 494.811116 987.60768 0.35412 0.00017522 -0.90227 -0.00044645 -0.54815 -0.00027123 494.81059846998664 40.516 0.81635 40.516 40.032 40.849 0 47 22 3 0 0 0 0.38759 1 7461 7461 22.736 14.581 1 4086300 38178 10413 25648 25664 37530 37530 0.11338022231279865 RLATLKSTV 9 Unmodified _RLATLKSTV_ 0 0 0 ENST00000495744.5_1_3:142315288-142364209:+|nuORF;ENST00000483373.5_1_3:142315288-142364209:+|nuORF ENST00000495744.5_1_3:142315288-142364209:+|nuORF ENST00000495744.5_1_3:142315288-142364209:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 494.811116 987.60768 -0.048235 -2.3867E-05 -0.51292 -0.0002538 -0.56115 -0.00027766 494.8107739769352 43.098 0.75179 40.379 39.914 40.666 -2.7191 0.056453 -9.6619E-05 NaN 22.736 44 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4793400 38179 10413 25648 25664 0.11338022231279865 RLATLKSTV 9 Unmodified _RLATLKSTV_ 0 0 0 ENST00000495744.5_1_3:142315288-142364209:+|nuORF;ENST00000483373.5_1_3:142315288-142364209:+|nuORF ENST00000495744.5_1_3:142315288-142364209:+|nuORF ENST00000495744.5_1_3:142315288-142364209:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 494.811116 987.60768 -0.077212 -3.8205E-05 -0.14769 -7.3079E-05 -0.2249 -0.00011128 494.8109054911379 42.836 0.80598 40.186 39.92 40.726 -2.651 -0.13679 0.00026482 NaN 22.736 44 22 3 NaN NaN NaN NaN 0 NaN NaN 0 4948700 38180 10413 25648 25664 0.11338022231279865 RLATLKSTV 9 Unmodified _RLATLKSTV_ 0 0 0 ENST00000495744.5_1_3:142315288-142364209:+|nuORF;ENST00000483373.5_1_3:142315288-142364209:+|nuORF ENST00000495744.5_1_3:142315288-142364209:+|nuORF ENST00000495744.5_1_3:142315288-142364209:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 494.811116 987.60768 -0.21263 -0.00010521 -0.072927 -3.6085E-05 -0.28555 -0.0001413 494.8110372199405 42.815 0.83451 40.209 39.932 40.766 -2.606 -0.11354 0.0003388 NaN 22.736 48 23 3 NaN NaN NaN NaN 0 NaN NaN 0 4474900 38181 10413 25648 25664 0.11338022231279865 RLCFLQEERTF 11 Unmodified _RLCFLQEERTF_ 0 0 0 ENSG00000142606|ENST00000378412|MMEL1;nc|ENSG00000142606|Q495T6-3|MMEL1;nc|ENSG00000142606|Q495T6-2|MMEL1 ENSG00000142606|ENST00000378412|MMEL1 ENSG00000142606|ENST00000378412|MMEL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24560546875 3 481.246733 1440.71837 NaN NaN NaN NaN NaN NaN NaN 28.684 1 26.687 26.187 27.187 -1.9962 0 0 0 0.22632 1 4850 4850 0.094841 0 1 38182 4429 25649 25665 37531 37531 0.015638741571592618 RLCNVVVI 8 Unmodified _RLCNVVVI_ 0 0 0 REV__ENST00000484201.5_1_1:114440516-114447658:-|nuORF REV__ENST00000484201.5_1_1:114440516-114447658:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22698974609375 2 458.275855 914.537157 NaN NaN NaN NaN NaN NaN NaN 101.47 1 97.312 96.812 97.812 -4.1594 0 0 0 0.22934 1 19942 19942 1.7423 0 1 + 38183 13075 25650 25666 37532 37532 0.07647025641961136 RLCQTWAYY 9 Unmodified _RLCQTWAYY_ 0 0 0 ENST00000554308.5_1_14:91942762-91942846:-|nuORF ENST00000554308.5_1_14:91942762-91942846:-|nuORF ENST00000554308.5_1_14:91942762-91942846:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2846069335938 2 602.284408 1202.55426 NaN NaN NaN NaN NaN NaN NaN 94.393 1 90.202 89.702 90.702 -4.1911 0 0 0 0.23508 1 18004 18004 12.532 1.0368 1 38184 11217 25651 25667 37533 37533 -0.03891098542908367 RLCVPQMF 8 Unmodified _RLCVPQMF_ 0 0 0 REV__ENSG00000167394|ENST00000300849|ZNF668 REV__ENSG00000167394|ENST00000300849|ZNF668 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.00531005859375 3 331.838469 992.493578 -0.71603 -0.00023761 -0.18973 -6.2958E-05 -0.90576 -0.00030056 331.8383899726547 43.162 0.59113 40.556 40.315 40.906 -2.606 27 16 2 0 0 0 1.0265 1 7799 7799 3.9444 0 1 2998200 + 38185 17923 25652 25668 37534 37534 -0.0029690712682395315 RLDDKKFLY 9 Unmodified _RLDDKKFLY_ 0 0 0 nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR nc|ENSG00000163946|Q9UK61-2|TASOR nc|ENSG00000163946|Q9UK61-2|TASOR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 400.2319030761719 3 399.892396 1196.65536 0.28613 0.00011442 -0.46871 -0.00018743 -0.18258 -7.3013E-05 399.89218288244996 72.003 0.77829 68.376 67.918 68.696 -3.6275 62 21 4 0 0 0 0.039965 1 13554 13554 105.38 90.398 1 9434500 38186 5489 25653 25669 37535 37535 0.06489676431465341 RLDDKKFLY 9 Unmodified _RLDDKKFLY_ 0 0 0 nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR nc|ENSG00000163946|Q9UK61-2|TASOR nc|ENSG00000163946|Q9UK61-2|TASOR MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 399.892396 1196.65536 -0.36071 -0.00014425 0.18223 7.2871E-05 -0.17848 -7.1374E-05 399.89240394314425 68.542 0.64102 68.542 68.217 68.858 0 0.10989 0.00032029 NaN 105.38 58 17 5 NaN NaN NaN NaN 0 NaN NaN 0 9428300 38187 5489 25653 25669 0.06489676431465341 RLDDKKFLY 9 Unmodified _RLDDKKFLY_ 0 0 0 nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR nc|ENSG00000163946|Q9UK61-2|TASOR nc|ENSG00000163946|Q9UK61-2|TASOR MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 399.892396 1196.65536 -0.32998 -0.00013195 0.026102 1.0438E-05 -0.30387 -0.00012152 399.8924137667426 71.703 1.4177 68.454 68.028 69.446 -3.2492 0.021049 0.00013299 NaN 105.38 96 39 5 NaN NaN NaN NaN 0 NaN NaN 0 10415000 38188 5489 25653 25669 0.06489676431465341 RLDDKKFLY 9 Unmodified _RLDDKKFLY_ 0 0 0 nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR nc|ENSG00000163946|Q9UK61-2|TASOR nc|ENSG00000163946|Q9UK61-2|TASOR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 399.892396 1196.65536 -0.176 -7.0381E-05 -0.044175 -1.7665E-05 -0.22017 -8.8046E-05 399.8923537966442 71.897 0.90508 68.358 67.942 68.847 -3.5385 -0.074155 4.8678E-05 NaN 105.38 69 25 4 NaN NaN NaN NaN 0 NaN NaN 0 8718000 38189 5489 25653 25669 0.06489676431465341 RLDEDLAAY 9 Unmodified _RLDEDLAAY_ 0 0 0 nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP nc|ENSG00000173786|P09543-2|CNP nc|ENSG00000173786|P09543-2|CNP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2643432617188 2 533.264196 1064.51384 0.0026466 1.4113E-06 -0.72596 -0.00038713 -0.72331 -0.00038572 533.2639568570116 87.468 0.50412 83.741 83.504 84.008 -3.727 19 13 2 0 0 0 0.52027 1 17142 17142 18.373 5.3306 1 2053200 38190 6309 25654 25670 37536 37536 -0.015837416616705013 RLDEDLAAY 9 Unmodified _RLDEDLAAY_ 0 0 0 nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP nc|ENSG00000173786|P09543-2|CNP nc|ENSG00000173786|P09543-2|CNP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2639770507812 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 87.592 1 83.842 83.342 84.342 -3.7501 0 0 0 0.21078 1 16758 16758 20.415 2.2682 1 38191 6309 25654 25670 37537 37537 -0.015837416616705013 RLDEDLAAY 9 Unmodified _RLDEDLAAY_ 0 0 0 nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP nc|ENSG00000173786|P09543-2|CNP nc|ENSG00000173786|P09543-2|CNP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2782592773438 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 87.64 1 83.89 83.39 84.39 -3.7501 0 0 0 0.18489 1 16769 16769 17.113 17.002 1 38192 6309 25654 25670 37538 37538 -0.015837416616705013 RLDEDLAAY 9 Unmodified _RLDEDLAAY_ 0 0 0 nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP nc|ENSG00000173786|P09543-2|CNP nc|ENSG00000173786|P09543-2|CNP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2782592773438 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 87.656 1 83.906 83.406 84.406 -3.7501 0 0 0 0.22823 1 16772 16772 15.248 2.7169 1 38193 6309 25654 25670 37539 37539 -0.015837416616705013 RLDEVISKY 9 Unmodified _RLDEVISKY_ 0 0 0 DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant;DAXX|p.C629Lfs*29|1|0.36|ENSG00000204209|chr6:33319435-33319436|-/G|frameshift_variant;nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;nc|ENSG00000204209|Q9UER7-2|DAXX;ENSG00000204209|ENST00000374542|DAXX DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21112060546875 3 374.876634 1121.60807 -0.12593 -4.7208E-05 0.068382 2.5635E-05 -0.057546 -2.1573E-05 374.87656491092184 73.612 0.70239 73.612 73.241 73.944 0 51 19 4 0 0 0 0.037776 4 14280 14235;14280;14297;14319 113.93 83.228 1 7989300 38194 782 25655 25671 37540;37541;37542;37543 37541 0.05213397160491695 RLDEVISKY 9 Unmodified _RLDEVISKY_ 0 0 0 DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant;DAXX|p.C629Lfs*29|1|0.36|ENSG00000204209|chr6:33319435-33319436|-/G|frameshift_variant;nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;nc|ENSG00000204209|Q9UER7-2|DAXX;ENSG00000204209|ENST00000374542|DAXX DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2109069824219 3 374.876634 1121.60807 -0.25568 -9.5849E-05 0.14206 5.3257E-05 -0.11362 -4.2592E-05 374.87664632560256 76.939 0.72849 73.524 73.075 73.804 -3.4151 55 20 3 0 0 0 0.039965 6 14994 14956;14994;14996;15033;15043;15045 113.93 83.228 1 7766800 38195 782 25655 25671 37544;37545;37546;37547;37548;37549 37545 0.05213397160491695 RLDEVISKY 9 Unmodified _RLDEVISKY_ 0 0 0 DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant;DAXX|p.C629Lfs*29|1|0.36|ENSG00000204209|chr6:33319435-33319436|-/G|frameshift_variant;nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;nc|ENSG00000204209|Q9UER7-2|DAXX;ENSG00000204209|ENST00000374542|DAXX DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2109375 3 374.876634 1121.60807 0.045281 1.6975E-05 -0.068308 -2.5607E-05 -0.023027 -8.6323E-06 374.87652589338063 77.292 0.77278 73.525 73.123 73.895 -3.7664 41 21 3 0 0 0 0.037776 6 14650 14603;14606;14650;14653;14697;14698 106.94 82.059 1 6600600 38196 782 25655 25671 37550;37551;37552;37553;37554;37555 37552 0.05213397160491695 RLDEVISKY 9 Unmodified _RLDEVISKY_ 0 0 0 DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant;DAXX|p.C629Lfs*29|1|0.36|ENSG00000204209|chr6:33319435-33319436|-/G|frameshift_variant;nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;nc|ENSG00000204209|Q9UER7-2|DAXX;ENSG00000204209|ENST00000374542|DAXX DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2109069824219 3 374.876634 1121.60807 -0.58126 -0.0002179 0.53415 0.00020024 -0.047112 -1.7661E-05 374.8767785524348 77.263 0.76474 73.604 73.154 73.919 -3.6588 53 21 3 0 0 0 0.039965 6 14733 14645;14647;14685;14689;14733;14736 97.138 77.747 1 6127200 38197 782 25655 25671 37556;37557;37558;37559;37560;37561 37560 0.05213397160491695 RLDGEAGR 8 Unmodified _RLDGEAGR_ 0 0 0 nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3 nc|ENSG00000099308|O60307|MAST3 nc|ENSG00000099308|O60307|MAST3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.232177734375 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 78.318 1 74.552 74.052 75.052 -3.7664 0 0 0 0.21039 1 14851 14851 16.942 0 1 38198 1885 25656 25672 37562 37562 0.005102729180521237 RLDKERFMKRW 11 Unmodified _RLDKERFMKRW_ 0 0 0 REV__nc|ENSG00000177380|O75145-2|PPFIA3 REV__nc|ENSG00000177380|O75145-2|PPFIA3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2649536132812 3 522.289155 1563.84564 NaN NaN NaN NaN NaN NaN NaN 136.22 1 136.22 135.72 136.72 0 0 0 0 0.22632 1 26990 26990 1.4551 1.4289 1 + 38199 18554 25657 25673 37563 37563 0.08626639822023208 RLDLIFVTF 9 Unmodified _RLDLIFVTF_ 0 0 0 TMEM63C|p.S689Pfs*10|1|0.46|ENSG00000165548|chr14:77251812-77251812|T/-|frameshift_variant;ENSG00000165548|ENST00000298351|TMEM63C TMEM63C|p.S689Pfs*10|1|0.46|ENSG00000165548|chr14:77251812-77251812|T/-|frameshift_variant TMEM63C|p.S689Pfs*10|1|0.46|ENSG00000165548|chr14:77251812-77251812|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2208251953125 3 375.221853 1122.64373 NaN NaN NaN NaN NaN NaN NaN 129.93 1 125.15 124.65 125.65 -4.7725 0 0 0 0.23508 1 24998 24998 4.897 0 1 38200 5638 25658 25674 37564 37564 0.08731479408129417 RLDLREKL 8 Unmodified _RLDLREKL_ 0 0 0 tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1 tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1 tr|U7SKG3|U7SKG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01983PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2781372070312 2 521.822015 1041.62948 -0.21035 -0.00010977 0.28868 0.00015064 0.078329 4.0874E-05 521.8220878465447 100.91 0.58934 96.746 96.461 97.05 -4.1594 27 16 2 0 0 0 0.73402 1 19789 19789 9.3831 0 1 2244600 38201 25961 25659 25675 37565 37565 0.11032826979840138 RLDPHTLEV 9 Unmodified _RLDPHTLEV_ 0 0 0 ENSG00000105088|ENST00000264833|OLFM2 ENSG00000105088|ENST00000264833|OLFM2 ENSG00000105088|ENST00000264833|OLFM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2014465332031 3 360.532979 1078.57711 0.18613 6.7105E-05 -0.11956 -4.3104E-05 0.066571 2.4001E-05 360.53287806743646 79.048 0.65598 79.048 78.614 79.27 0 31 18 2 0 0 0 0.882 1 15407 15407 1.7423 0.78 1 2104500 38202 2278 25660 25676 37566 37566 0.04096243846242942 RLDPHTLEV 9 Unmodified _RLDPHTLEV_ 0 0 0 ENSG00000105088|ENST00000264833|OLFM2 ENSG00000105088|ENST00000264833|OLFM2 ENSG00000105088|ENST00000264833|OLFM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 3 360.532979 1078.57711 0.076673 2.7643E-05 -0.096659 -3.4849E-05 -0.019985 -7.2054E-06 360.5329003687765 82.528 0.72173 78.654 78.297 79.019 -3.8736 44 20 3 0 0 0 0.72244 1 15681 15681 22.775 10.6 1 2403800 38203 2278 25660 25676 37567 37567 0.04096243846242942 RLDPHTLEV 9 Unmodified _RLDPHTLEV_ 0 0 0 ENSG00000105088|ENST00000264833|OLFM2 ENSG00000105088|ENST00000264833|OLFM2 ENSG00000105088|ENST00000264833|OLFM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2093200683594 3 360.532979 1078.57711 -0.81868 -0.00029516 0.81134 0.00029252 -0.0073412 -2.6468E-06 360.53321559900525 82.298 0.76274 78.599 78.278 79.041 -3.6985 47 21 3 0 0 0 0.56124 1 15707 15707 19.626 18.762 1 2096500 38204 2278 25660 25676 37568 37568 0.04096243846242942 RLDPLFFWSFR 11 Unmodified _RLDPLFFWSFR_ 0 0 0 ENST00000476113.1_1_20:62695297-62695453:+|nuORF ENST00000476113.1_1_20:62695297-62695453:+|nuORF ENST00000476113.1_1_20:62695297-62695453:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3946533203125 2 742.395879 1482.7772 NaN NaN NaN NaN NaN NaN NaN 143 1 143 142.5 143.5 0 0 0 0 0.22632 1 28526 28526 0.026206 0.02025 1 38205 10281 25661 25677 37569 37569 0.05512718513841719 RLDPLFFWSFR 11 Unmodified _RLDPLFFWSFR_ 0 0 0 ENST00000476113.1_1_20:62695297-62695453:+|nuORF ENST00000476113.1_1_20:62695297-62695453:+|nuORF ENST00000476113.1_1_20:62695297-62695453:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3958129882812 2 742.395879 1482.7772 NaN NaN NaN NaN NaN NaN NaN 159.77 1 159.77 159.27 160.27 0 0 0 0 0.22632 1 32083 32083 0.0059557 0.0059557 1 38206 10281 25661 25677 37570 37570 0.05512718513841719 RLDRQRRWQQR 11 Unmodified _RLDRQRRWQQR_ 0 0 0 REV__ENSG00000128408|ENST00000614167|RIBC2 REV__ENSG00000128408|ENST00000614167|RIBC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.268798828125 3 533.301334 1596.88217 NaN NaN NaN NaN NaN NaN NaN 151.16 1 145.99 145.49 146.49 -5.1759 0 0 0 0.22632 1 29305 29305 0.50596 0.41111 1 + 38207 15918 25662 25678 37571 37571 0.10760652762951395 RLDRVKEY 8 Unmodified _RLDRVKEY_ 0 0 0 nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;SYNGAP1|p.L1302Wfs*8|1|0.21|ENSG00000197283|chr6:33451772-33451772|C/-|frameshift_variant;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2054443359375 3 360.204974 1077.59309 -0.75647 -0.00027248 0.88631 0.00031925 0.12984 4.6769E-05 360.20528624877977 50.166 0.66856 47.159 46.74 47.408 -3.0068 34 19 2 0 0 0 8448 1 9147 9147 0.30703 0 1 2702900 38208 7350 25663 25679 37572 37572 0.0573995008314796 RLDSLTTLY 9 Unmodified _RLDSLTTLY_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2586669921875 2 541.298039 1080.58152 0.38861 0.00021036 -0.095323 -5.1598E-05 0.29329 0.00015876 541.2980463088469 123.77 0.77692 119.19 118.74 119.52 -4.5757 43 21 3 0 0 0 0.17935 2 24389 24389;24438 39.95 26.268 1 3730000 38209 2456 25664 25680 37573;37574 37573 0.04445708269145143 RLDSLTTLY 9 Unmodified _RLDSLTTLY_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2728881835938 2 541.298039 1080.58152 0.48968 0.00026506 0.11934 6.4599E-05 0.60902 0.00032966 541.2979888305043 124.02 0.6382 119.29 118.85 119.49 -4.731 32 17 2 0 0 0 0.27986 2 23794 23794;23843 32.786 2.1491 1 2973700 38210 2456 25664 25680 37575;37576 37575 0.04445708269145143 RLDSLTTLY 9 Unmodified _RLDSLTTLY_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2588500976562 2 541.298039 1080.58152 0.34838 0.00018858 -0.07839 -4.2432E-05 0.26999 0.00014614 541.2980229250608 123.81 0.8039 119.22 118.89 119.7 -4.5926 35 22 2 0 0 0 0.27986 2 23850 23850;23857 32.786 5.1569 1 2948500 38211 2456 25664 25680 37577;37578 37577 0.04445708269145143 RLDSQNAQGY 10 Unmodified _RLDSQNAQGY_ 0 0 0 TWF1|p.N209Mfs*4|1|0.19|ENSG00000151239|chr12:43797436-43797436|T/-|frameshift_variant;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1 TWF1|p.N209Mfs*4|1|0.19|ENSG00000151239|chr12:43797436-43797436|T/-|frameshift_variant TWF1|p.N209Mfs*4|1|0.19|ENSG00000151239|chr12:43797436-43797436|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.320556640625 2 576.275626 1150.5367 0.26162 0.00015077 -0.22634 -0.00013044 0.035279 2.033E-05 576.2755311757504 26.424 0.27909 24.79 24.65 24.929 -1.6347 21 7 4 0 0 0 0.57502 1 4384 4384 20.581 9.7814 1 866170 38212 4854 25665 25681 37579 37579 -0.032547225441931005 RLDSQNAQGY 10 Unmodified _RLDSQNAQGY_ 0 0 0 TWF1|p.N209Mfs*4|1|0.19|ENSG00000151239|chr12:43797436-43797436|T/-|frameshift_variant;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1 TWF1|p.N209Mfs*4|1|0.19|ENSG00000151239|chr12:43797436-43797436|T/-|frameshift_variant TWF1|p.N209Mfs*4|1|0.19|ENSG00000151239|chr12:43797436-43797436|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 576.275626 1150.5367 1.0821 0.00062359 -0.88138 -0.00050792 0.20072 0.00011567 576.2750651673201 26.535 0.27608 24.753 24.586 24.862 -1.7821 -0.018488 -0.00029497 NaN 20.581 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 322770 38213 4854 25665 25681 -0.032547225441931005 RLDSRLHTPMY 11 Unmodified _RLDSRLHTPMY_ 0 0 0 OR2F1|p.R170Tfs*8|1|0.16|ENSG00000213215|chr7:143960478-143960479|-/CGTCAAG|frameshift_variant;ENSG00000255223|ENST00000528616|OR5M11;OR2F1|p.A300Pfs*12|1|0.43|ENSG00000213215|chr7:143960864-143960864|G/-|frameshift_variant;ENSG00000221910|ENST00000408955|OR2F2;ENSG00000213215|ENST00000641412|OR2F1 OR2F1|p.R170Tfs*8|1|0.16|ENSG00000213215|chr7:143960478-143960479|-/CGTCAAG|frameshift_variant OR2F1|p.R170Tfs*8|1|0.16|ENSG00000213215|chr7:143960478-143960479|-/CGTCAAG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.13037109375 3 463.574961 1387.70305 0.42962 0.00019916 0.057172 2.6503E-05 0.48679 0.00022566 463.5749281416533 158.73 0.50734 153.46 153.19 153.69 -5.2711 17 13 2 0 0 0 0.96201 1 30815 30815 2.4348 1.325 1 1172400 38214 7689 25666 25682 37580 37580 0.024710073600090254 RLDSRLHTPMY 11 Unmodified _RLDSRLHTPMY_ 0 0 0 OR2F1|p.R170Tfs*8|1|0.16|ENSG00000213215|chr7:143960478-143960479|-/CGTCAAG|frameshift_variant;ENSG00000255223|ENST00000528616|OR5M11;OR2F1|p.A300Pfs*12|1|0.43|ENSG00000213215|chr7:143960864-143960864|G/-|frameshift_variant;ENSG00000221910|ENST00000408955|OR2F2;ENSG00000213215|ENST00000641412|OR2F1 OR2F1|p.R170Tfs*8|1|0.16|ENSG00000213215|chr7:143960478-143960479|-/CGTCAAG|frameshift_variant OR2F1|p.R170Tfs*8|1|0.16|ENSG00000213215|chr7:143960478-143960479|-/CGTCAAG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 463.574961 1387.70305 0.13359 6.1931E-05 -0.024835 -1.1513E-05 0.10876 5.0418E-05 463.90913030508693 158.87 0.31805 153.59 153.36 153.68 -5.2748 0.066646 -7.9043E-05 NaN 2.4348 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 682960 38215 7689 25666 25682 0.024710073600090254 RLDSTGVNV 9 Unmodified _RLDSTGVNV_ 0 0 0 nc|ENSG00000196550|Q5TYM5-2|FAM72A;ENSG00000263513|ENST00000584486|FAM72C;ENSG00000215784|ENST00000400889|FAM72D;ENSG00000196550|ENST00000367128|FAM72A nc|ENSG00000196550|Q5TYM5-2|FAM72A nc|ENSG00000196550|Q5TYM5-2|FAM72A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2379455566406 2 480.759081 959.503609 -0.13818 -6.6433E-05 0.80919 0.00038903 0.67101 0.00032259 480.75960099220674 51.703 0.72121 48.821 48.348 49.07 -2.8824 52 20 4 0 0 0 0.21532 1 9801 9801 36.506 5.2379 1 12950000 38216 7282 25667 25683 37581 37581 0.022236954037680334 RLDSTGVNV 9 Unmodified _RLDSTGVNV_ 0 0 0 nc|ENSG00000196550|Q5TYM5-2|FAM72A;ENSG00000263513|ENST00000584486|FAM72C;ENSG00000215784|ENST00000400889|FAM72D;ENSG00000196550|ENST00000367128|FAM72A nc|ENSG00000196550|Q5TYM5-2|FAM72A nc|ENSG00000196550|Q5TYM5-2|FAM72A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2423400878906 2 480.759081 959.503609 -0.11132 -5.352E-05 0.84796 0.00040767 0.73664 0.00035414 480.75961149834603 51.942 0.90144 48.89 48.306 49.207 -3.0517 60 25 4 0 0 0 0.050901 1 9580 9580 75.761 3.8386 1 13334000 38217 7282 25667 25683 37582 37582 0.022236954037680334 RLDSTGVNV 9 Unmodified _RLDSTGVNV_ 0 0 0 nc|ENSG00000196550|Q5TYM5-2|FAM72A;ENSG00000263513|ENST00000584486|FAM72C;ENSG00000215784|ENST00000400889|FAM72D;ENSG00000196550|ENST00000367128|FAM72A nc|ENSG00000196550|Q5TYM5-2|FAM72A nc|ENSG00000196550|Q5TYM5-2|FAM72A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.759081 959.503609 -0.13818 -6.6433E-05 0.80919 0.00038903 0.67101 0.00032259 480.75960099220674 51.703 0.72121 48.821 48.348 49.07 -2.8824 -0.077506 0.00026954 NaN 75.761 52 20 4 NaN NaN NaN NaN 0 NaN NaN 0 12950000 38218 7282 25667 25683 0.022236954037680334 RLDSTGVNV 9 Unmodified _RLDSTGVNV_ 0 0 0 nc|ENSG00000196550|Q5TYM5-2|FAM72A;ENSG00000263513|ENST00000584486|FAM72C;ENSG00000215784|ENST00000400889|FAM72D;ENSG00000196550|ENST00000367128|FAM72A nc|ENSG00000196550|Q5TYM5-2|FAM72A nc|ENSG00000196550|Q5TYM5-2|FAM72A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.759081 959.503609 0.068034 3.2708E-05 0.69739 0.00033527 0.76542 0.00036798 480.7595819079031 51.96 0.80851 48.915 48.368 49.177 -3.0453 0.016878 0.00016204 NaN 75.761 46 22 3 NaN NaN NaN NaN 0 NaN NaN 0 12581000 38219 7282 25667 25683 0.022236954037680334 RLEDQVHAL 9 Unmodified _RLEDQVHAL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2584838867188 2 540.793455 1079.57236 0.2728 0.00014753 -0.24135 -0.00013052 0.031458 1.7012E-05 540.7933172237892 64.02 0.59412 60.604 60.32 60.915 -3.4158 28 16 2 0 0 0 0.50419 1 11991 11991 19.362 4.7802 1 1791600 38220 7612 25668 25684 37583 37583 0.035753597034727136 RLEDQVHAL 9 Unmodified _RLEDQVHAL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2592163085938 2 540.793455 1079.57236 0.34905 0.00018876 0.1826 9.875E-05 0.53165 0.00028751 540.7932539992651 63.801 0.65336 60.544 60.296 60.949 -3.2567 35 18 3 0 0 0 0.43219 1 11992 11992 23.79 5.6434 1 2019800 38221 7612 25668 25684 37584 37584 0.035753597034727136 RLEDQVHAL 9 Unmodified _RLEDQVHAL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.793455 1079.57236 -0.016252 -8.789E-06 0.66459 0.00035941 0.64834 0.00035062 540.7936998421679 60.832 0.49097 60.832 60.522 61.013 0 0.21262 0.00050843 NaN 23.79 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1679300 38222 7612 25668 25684 0.035753597034727136 RLEEEKAHL 9 Unmodified _RLEEEKAHL_ 0 0 0 REV__nc|ENSG00000198003|A5D8V7-2|ODAD3 REV__nc|ENSG00000198003|A5D8V7-2|ODAD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.5050964355469 3 375.540134 1123.59857 0.1125 4.2248E-05 -0.25529 -9.5873E-05 -0.1428 -5.3626E-05 375.54008578534894 44.12 1.5207 44.12 43.712 45.233 0 154 43 7 0 0 0 0.5428 1 8322 8322 4.897 4.0521 1 159030000 + 38223 19383 25669 25685 37585 37585 0.04171628874951239 RLEGWTGP 8 Unmodified _RLEGWTGP_ 0 0 0 REV__ENST00000529233.5_1_11:64880270-64881038:+|nuORF REV__ENST00000529233.5_1_11:64880270-64881038:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2383728027344 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 65.853 1 62.806 62.306 63.306 -3.047 0 0 0 0.20618 1 12752 12752 20.454 1.1966 1 + 38224 22739 25670 25686 37586 37586 0.0003634506618936939 RLEKKRIKKRK 11 Unmodified _RLEKKRIKKRK_ 0 0 0 ENSG00000198873|ENST00000392870|GRK5 ENSG00000198873|ENST00000392870|GRK5 ENSG00000198873|ENST00000392870|GRK5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3925170898438 2 742.006993 1481.99943 NaN NaN NaN NaN NaN NaN NaN 173.64 1 173.64 173.14 174.14 0 0 0 0 0.22632 1 35916 35916 0 0 1 38225 7512 25671 25687 37587 37587 0.2777141764981934 RLEKKRIKKRK 11 Unmodified _RLEKKRIKKRK_ 0 0 0 ENSG00000198873|ENST00000392870|GRK5 ENSG00000198873|ENST00000392870|GRK5 ENSG00000198873|ENST00000392870|GRK5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3753662109375 2 742.006993 1481.99943 NaN NaN NaN NaN NaN NaN NaN 172.24 1 167.35 166.85 167.85 -4.8977 0 0 0 0.22632 1 34156 34156 0 0 1 38226 7512 25671 25687 37588 37588 0.2777141764981934 RLELHIRRG 9 Unmodified _RLELHIRRG_ 0 0 0 REV__ENST00000560832.1_1_15:35529508-35529652:+|nuORF REV__ENST00000560832.1_1_15:35529508-35529652:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.89654541015625 3 383.903629 1148.68906 NaN NaN NaN NaN NaN NaN NaN 9.4785 1 8.4438 7.9438 8.9438 -1.0347 0 0 0 0.23508 1 971 971 0.26902 0 1 + 38227 16570 25672 25688 37589 37589 0.12066142713888439 RLEQELHHV 9 Unmodified _RLEQELHHV_ 0 0 0 ENST00000556940.1_1_14:37777682-37838859:+|nuORF;nc|ENSG00000151338|Q8TD10-2|MIPOL1;ENST00000554930.5_1_14:37667225-37854725:+|nuORF;ENSG00000151338|ENST00000684589|MIPOL1 ENST00000556940.1_1_14:37777682-37838859:+|nuORF ENST00000556940.1_1_14:37777682-37838859:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7214050292969 3 387.543878 1159.60981 -0.061222 -2.3726E-05 0.70131 0.00027179 0.64009 0.00024806 387.5439234801609 29.524 0.38133 29.524 29.263 29.644 0 14 10 2 0 0 0 0.86693 1 5277 5277 6.6304 2.1015 1 859470 38228 4861 25673 25689 37590 37590 0.03638450969060614 RLEQELHHV 9 Unmodified _RLEQELHHV_ 0 0 0 ENST00000556940.1_1_14:37777682-37838859:+|nuORF;nc|ENSG00000151338|Q8TD10-2|MIPOL1;ENST00000554930.5_1_14:37667225-37854725:+|nuORF;ENSG00000151338|ENST00000684589|MIPOL1 ENST00000556940.1_1_14:37777682-37838859:+|nuORF ENST00000556940.1_1_14:37777682-37838859:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7135314941406 3 387.543878 1159.60981 0.067178 2.6034E-05 0.61911 0.00023993 0.68629 0.00026597 387.5439755675659 31.631 0.35179 29.401 29.234 29.586 -2.2305 19 9 3 0 0 0 0.30018 1 5741 5741 51.415 51.415 1 1102900 38229 4861 25673 25689 37591 37591 0.03638450969060614 RLEQELHHV 9 Unmodified _RLEQELHHV_ 0 0 0 ENST00000556940.1_1_14:37777682-37838859:+|nuORF;nc|ENSG00000151338|Q8TD10-2|MIPOL1;ENST00000554930.5_1_14:37667225-37854725:+|nuORF;ENSG00000151338|ENST00000684589|MIPOL1 ENST00000556940.1_1_14:37777682-37838859:+|nuORF ENST00000556940.1_1_14:37777682-37838859:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7225036621094 3 387.543878 1159.60981 0.28382 0.00010999 0.24854 9.6319E-05 0.53236 0.00020631 387.54391685287493 31.549 0.3559 29.523 29.267 29.623 -2.0264 17 9 2 0 0 0 0.58921 1 5450 5450 4.897 4.8837 1 1096900 38230 4861 25673 25689 37592 37592 0.03638450969060614 RLEVIAEKRRL 11 Unmodified _RLEVIAEKRRL_ 0 0 0 PALM3|p.V281Wfs*12|1|0.19|ENSG00000187867|chr19:14054786-14054786|C/-|frameshift_variant;PALM3|p.E291Rfs*2|1|0.41|ENSG00000187867|chr19:14054756-14054756|C/-|frameshift_variant;nc|ENSG00000187867|A6NDB9|PALM3;ENSG00000187867|ENST00000669674|PALM3 PALM3|p.V281Wfs*12|1|0.19|ENSG00000187867|chr19:14054786-14054786|C/-|frameshift_variant PALM3|p.V281Wfs*12|1|0.19|ENSG00000187867|chr19:14054786-14054786|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5333251953125 3 461.624532 1381.85177 NaN NaN NaN NaN NaN NaN NaN 85.727 1 81.776 81.276 82.276 -3.9503 0 0 0 0.22632 1 16307 16307 1.4551 1.4492 1 38231 7134 25674 25690 37593 37593 0.17611481325207023 RLFAWRKRWFI 11 Unmodified _RLFAWRKRWFI_ 0 0 0 nc|ENSG00000215568|Q2WGN9|GAB4 nc|ENSG00000215568|Q2WGN9|GAB4 nc|ENSG00000215568|Q2WGN9|GAB4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 526.8275756835938 3 526.977129 1577.90956 NaN NaN NaN NaN NaN NaN NaN 165.61 1 160.82 160.32 161.32 -4.7898 0 0 0 0.22632 1 33183 33183 0.65807 0 1 38232 12596 25675 25691 37594 37594 0.14371788041285072 RLFCKKLFP 9 Unmodified _RLFCKKLFP_ 0 0 0 ENST00000381815.8_1_21:34876573-34876618:-|nuORF ENST00000381815.8_1_21:34876573-34876618:-|nuORF ENST00000381815.8_1_21:34876573-34876618:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.330322265625 2 576.341529 1150.66851 NaN NaN NaN NaN NaN NaN NaN 159.81 1 155.02 154.52 155.52 -4.7952 0 0 0 0.19632 1 31776 31776 0.073264 0 1 38233 9335 25676 25692 37595 37595 0.09919836009839855 RLFDQAFGL 9 Unmodified _RLFDQAFGL_ 0 0 0 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2733154296875 2 533.787641 1065.56073 0.55031 0.00029375 1.6553 0.0008836 2.2056 0.0011773 533.7875006082604 165.04 0.10896 160.06 159.97 160.08 -4.9811 4 2 2 0 0 0 0.47592 1 32234 32234 17.113 2.2746 1 4460300 38234 2366 25677 25693 37596 37596 0.030571626801247476 RLFDRGDFYTA 11 Unmodified _RLFDRGDFYTA_ 0 0 0 ENSG00000095002|ENST00000233146|MSH2;MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;MSH2|p.R382Ifs*26|1|0.23|ENSG00000095002|chr2:47429809-47429821|CGTCGATTCCCAG/-|frameshift_variant;MSH2|p.V102Ifs*75|1|0.05|ENSG00000095002|chr2:47408491-47408492|-/GATATTAC|frameshift_variant ENSG00000095002|ENST00000233146|MSH2;MSH2|p.V102Ifs*75|1|0.05|ENSG00000095002|chr2:47408491-47408492|-/GATATTAC|frameshift_variant ENSG00000095002|ENST00000233146|MSH2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7658386230469 3 454.226326 1359.65715 -0.44471 -0.000202 1.9091 0.00086717 1.4644 0.00066517 454.22780504368114 106.2 0.73175 101.93 101.59 102.32 -4.2638 41 20 3 0 0 0 0.94506 1 20925 20925 6.2344 0 1 3158100 38235 1850;12164 25678 25694 37597 37597 -0.00829314550583149 RLFDTQSKEKL 11 Unmodified _RLFDTQSKEKL_ 0 0 0 ENST00000480412.2_1_X:48933021-48933502:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45;nc|ENSG00000196998|Q9Y484-2|WDR45 ENST00000480412.2_1_X:48933021-48933502:-|nuORF ENST00000480412.2_1_X:48933021-48933502:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 455.795166015625 3 455.589265 1363.74596 0.097689 4.4506E-05 0.34424 0.00015683 0.44193 0.00020134 455.5892194876752 56.194 0.5235 56.194 55.904 56.427 0 31 14 3 0 0 0 0.67447 1 10724 10724 27.129 25.674 1 3215300 38236 7320 25679 25695 37598 37598 0.07864100689084808 RLFDTQSKEKL 11 Unmodified _RLFDTQSKEKL_ 0 0 0 ENST00000480412.2_1_X:48933021-48933502:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45;nc|ENSG00000196998|Q9Y484-2|WDR45 ENST00000480412.2_1_X:48933021-48933502:-|nuORF ENST00000480412.2_1_X:48933021-48933502:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 455.589265 1363.74596 -0.16392 -7.4678E-05 0.1427 6.5014E-05 -0.021213 -9.6646E-06 455.58931119220546 58.911 0.63596 56 55.648 56.284 -2.9105 -0.085711 -1.3535E-05 NaN 22.109 48 17 4 NaN NaN NaN NaN 0 NaN NaN 0 5276500 38237 7320 25679 25695 0.07864100689084808 RLFFFFEFWQC 11 Unmodified _RLFFFFEFWQC_ 0 0 0 REV__ENST00000324348.8_2_17:7818314-7818512:-|nuORF REV__ENST00000324348.8_2_17:7818314-7818512:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3941650390625 2 785.371015 1568.72748 NaN NaN NaN NaN NaN NaN NaN 167.21 1 162.32 161.82 162.82 -4.8916 0 0 0 0.22632 1 32853 32853 0 0 1 + 38238 20568 25680 25696 37599 37599 -0.03413732486455956 RLFFRRAR 8 Unmodified _RLFFRRAR_ 0 0 0 REV__nc|ENSG00000135636|O75923-15|DYSF REV__nc|ENSG00000135636|O75923-15|DYSF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.09490966796875 3 374.564948 1120.67301 -0.76149 -0.00028523 -0.0040021 -1.499E-06 -0.7655 -0.00028673 374.56486003706124 49.407 0.49806 46.4 46.242 46.74 -3.0068 19 13 2 0 0 0 1.0248 1 9034 9034 3.5965 0 1 974270 + 38239 13767 25681 25697 37600 37600 0.11750481267631585 RLFGRARL 8 Unmodified _RLFGRARL_ 0 0 0 REV__ZSCAN20|p.A361T|1|0.1|ENSG00000121903|chr1:33491339-33491339|G/A|missense_variant REV__ZSCAN20|p.A361T|1|0.1|ENSG00000121903|chr1:33491339-33491339|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.00836181640625 3 330.210282 987.609017 -0.27439 -9.0607E-05 -0.46951 -0.00015504 -0.7439 -0.00024564 330.2100748961162 40.539 0.60645 40.539 40.136 40.743 0 29 16 2 0 0 0 1.0277 1 7562 7562 1.6526 0 1 1270900 + 38240 25597 25682 25698 37601 37601 0.11471701110679078 RLFGRARL 8 Unmodified _RLFGRARL_ 0 0 0 REV__ZSCAN20|p.A361T|1|0.1|ENSG00000121903|chr1:33491339-33491339|G/A|missense_variant REV__ZSCAN20|p.A361T|1|0.1|ENSG00000121903|chr1:33491339-33491339|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 330.210282 987.609017 -0.38869 -0.00012835 -0.44936 -0.00014838 -0.83805 -0.00027673 330.2100664978184 42.865 0.75091 40.146 39.951 40.702 -2.7191 -0.13966 1.4838E-05 NaN 1.6526 27 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1764700 + 38241 25597 25682 25698 0.11471701110679078 RLFGRARL 8 Unmodified _RLFGRARL_ 0 0 0 REV__ZSCAN20|p.A361T|1|0.1|ENSG00000121903|chr1:33491339-33491339|G/A|missense_variant REV__ZSCAN20|p.A361T|1|0.1|ENSG00000121903|chr1:33491339-33491339|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 330.210282 987.609017 -0.048595 -1.6047E-05 -0.76987 -0.00025422 -0.81847 -0.00027027 330.20994882183527 42.89 0.59038 40.239 39.989 40.58 -2.651 -0.046236 -0.00030267 NaN 1.6526 30 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1614600 + 38242 25597 25682 25698 0.11471701110679078 RLFGRARL 8 Unmodified _RLFGRARL_ 0 0 0 REV__ZSCAN20|p.A361T|1|0.1|ENSG00000121903|chr1:33491339-33491339|G/A|missense_variant REV__ZSCAN20|p.A361T|1|0.1|ENSG00000121903|chr1:33491339-33491339|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 330.210282 987.609017 -0.69788 -0.00023045 -0.09402 -3.1046E-05 -0.7919 -0.00026149 330.2102258662311 42.824 0.37594 40.218 40.004 40.38 -2.606 -0.067499 0.00036685 NaN 1.6526 20 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1483100 + 38243 25597 25682 25698 0.11471701110679078 RLFHKTVYL 9 Unmodified _RLFHKTVYL_ 0 0 0 ENST00000397776.2_1_1:158424733-158425060:+|nuORF;nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24 ENST00000397776.2_1_1:158424733-158425060:+|nuORF ENST00000397776.2_1_1:158424733-158425060:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.2904052734375 3 392.901114 1175.68151 -0.25047 -9.841E-05 0.14467 5.6842E-05 -0.1058 -4.1567E-05 392.9011847180412 67.804 0.61891 64.695 64.283 64.901 -3.1086 35 17 3 0 0 0 0.77644 1 13170 13170 20.415 14.223 1 1508500 38244 4798 25683 25699 37602 37602 0.10069990393617445 RLFHKTVYL 9 Unmodified _RLFHKTVYL_ 0 0 0 ENST00000397776.2_1_1:158424733-158425060:+|nuORF;nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24 ENST00000397776.2_1_1:158424733-158425060:+|nuORF ENST00000397776.2_1_1:158424733-158425060:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 392.901114 1175.68151 -0.39059 -0.00015346 0.40598 0.00015951 0.01539 6.0468E-06 392.901226951649 64.566 0.58327 64.566 64.306 64.889 0 -0.053965 0.00024722 NaN 20.415 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3957100 38245 4798 25683 25699 0.10069990393617445 RLFHKTVYL 9 Unmodified _RLFHKTVYL_ 0 0 0 ENST00000397776.2_1_1:158424733-158425060:+|nuORF;nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24 ENST00000397776.2_1_1:158424733-158425060:+|nuORF ENST00000397776.2_1_1:158424733-158425060:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 392.901114 1175.68151 0.30978 0.00012171 -0.24401 -9.5872E-05 0.065768 2.584E-05 392.900951755305 68.176 0.45242 64.64 64.341 64.793 -3.5362 0.020741 -0.00051893 NaN 20.415 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2903000 38246 4798 25683 25699 0.10069990393617445 RLFHKTVYL 9 Unmodified _RLFHKTVYL_ 0 0 0 ENST00000397776.2_1_1:158424733-158425060:+|nuORF;nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24 ENST00000397776.2_1_1:158424733-158425060:+|nuORF ENST00000397776.2_1_1:158424733-158425060:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 392.901114 1175.68151 -0.27446 -0.00010783 0.31464 0.00012362 0.040187 1.579E-05 392.90118022076865 67.904 0.76611 64.577 64.31 65.076 -3.3268 -0.042261 0.00013956 NaN 20.415 42 21 3 NaN NaN NaN NaN 0 NaN NaN 0 2618300 38247 4798 25683 25699 0.10069990393617445 RLFLLIKK 8 Unmodified _RLFLLIKK_ 0 0 0 nc|ENSG00000138050|Q9BTF0-2|THUMPD2;ENSG00000138050|ENST00000505747|THUMPD2 nc|ENSG00000138050|Q9BTF0-2|THUMPD2 nc|ENSG00000138050|Q9BTF0-2|THUMPD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.22796630859375 3 344.2427 1029.70627 NaN NaN NaN NaN NaN NaN NaN 72.727 1 72.727 72.227 73.227 0 0 0 0 0.21486 1 14107 14107 0 0 1 38248 4142 25684 25700 37603 37603 0.19260670266999114 RLFLLIKK 8 Unmodified _RLFLLIKK_ 0 0 0 nc|ENSG00000138050|Q9BTF0-2|THUMPD2;ENSG00000138050|ENST00000505747|THUMPD2 nc|ENSG00000138050|Q9BTF0-2|THUMPD2 nc|ENSG00000138050|Q9BTF0-2|THUMPD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.2430725097656 3 344.2427 1029.70627 NaN NaN NaN NaN NaN NaN NaN 157.18 1 152.39 151.89 152.89 -4.7885 0 0 0 0.21486 1 31258 31258 0 0 1 38249 4142 25684 25700 37604 37604 0.19260670266999114 RLFLLIKK 8 Unmodified _RLFLLIKK_ 0 0 0 nc|ENSG00000138050|Q9BTF0-2|THUMPD2;ENSG00000138050|ENST00000505747|THUMPD2 nc|ENSG00000138050|Q9BTF0-2|THUMPD2 nc|ENSG00000138050|Q9BTF0-2|THUMPD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.176025390625 3 344.2427 1029.70627 NaN NaN NaN NaN NaN NaN NaN 144.36 1 139.41 138.91 139.91 -4.9445 0 0 0 0.21486 1 27880 27880 0 0 1 38250 4142 25684 25700 37605 37605 0.19260670266999114 RLFVSPPF 8 Unmodified _RLFVSPPF_ 0 0 0 REV__ENST00000284320.5_1_3:100119841-100119889:-|nuORF REV__ENST00000284320.5_1_3:100119841-100119889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7771911621094 2 481.776545 961.538538 NaN NaN NaN NaN NaN NaN NaN 163.89 1 159.1 158.6 159.6 -4.7898 0 0 0 0.20896 1 32706 32706 18.135 0 1 + 38251 20328 25685 25701 37606 37606 0.056229830023767136 RLGAHLAA 8 Unmodified _RLGAHLAA_ 0 0 0 REV__ENST00000522548.1_1_8:38704163-38705538:+|nuORF REV__ENST00000522548.1_1_8:38704163-38705538:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 404.74298095703125 2 404.743037 807.471521 NaN NaN NaN NaN NaN NaN NaN 130.95 1 130.95 130.45 131.45 0 0 0 0 0.23749 1 25890 25890 0.0082765 0 1 + 38252 16937 25686 25702 37607 37607 0.06008372511257676 RLGDKILQV 9 Unmodified _RLGDKILQV_ 0 0 0 ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 348.87054443359375 3 347.885353 1040.63423 0.11699 4.0698E-05 -0.37923 -0.00013193 -0.26224 -9.123E-05 347.8851923162974 96.228 0.76828 91.993 91.604 92.372 -4.2348 66 21 4 0 0 0 0.058839 1 18393 18393 44.945 22.208 1 13327000 38253 1367 25687 25703 37608 37608 0.11553711122587629 RLGDKILQV 9 Unmodified _RLGDKILQV_ 0 0 0 ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 347.885353 1040.63423 -0.52845 -0.00018384 0.35352 0.00012298 -0.17494 -6.0859E-05 347.885448176799 92.381 0.8 92.381 91.949 92.749 0 0.26279 0.00025943 NaN 44.945 55 22 3 NaN NaN NaN NaN 0 NaN NaN 0 15015000 38254 1367 25687 25703 0.11553711122587629 RLGDKILQV 9 Unmodified _RLGDKILQV_ 0 0 0 ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 347.885353 1040.63423 -0.2318 -8.0639E-05 0.013712 4.7701E-06 -0.21809 -7.5869E-05 347.8853179796507 96.055 0.75066 92.005 91.611 92.362 -4.0496 -0.11318 -9.5204E-05 NaN 44.945 65 21 4 NaN NaN NaN NaN 0 NaN NaN 0 16112000 38255 1367 25687 25703 0.11553711122587629 RLGDKILQV 9 Unmodified _RLGDKILQV_ 0 0 0 ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 347.885353 1040.63423 -0.70922 -0.00024673 0.50235 0.00017476 -0.20686 -7.1965E-05 347.8854959605526 95.976 0.82463 92.095 91.686 92.51 -3.881 -0.023722 0.00041477 NaN 44.945 66 23 4 NaN NaN NaN NaN 0 NaN NaN 0 12944000 38256 1367 25687 25703 0.11553711122587629 RLGEAEGLMKV 11 Unmodified _RLGEAEGLMKV_ 0 0 0 nc|ENSG00000157637|Q9HBR0-3|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10 nc|ENSG00000157637|Q9HBR0-3|SLC38A10 nc|ENSG00000157637|Q9HBR0-3|SLC38A10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.27880859375 2 601.831723 1201.64889 0.63769 0.00038378 0.065797 3.9599E-05 0.70348 0.00042338 601.8317306086288 91.945 0.48639 87.851 87.668 88.155 -4.0946 24 13 2 0 0 0 0.46172 2 17520 17498;17520 39.923 2.2103 1 2066600 38257 5134 25688 25704 37609;37610 37610 0.056134152084496236 RLGEAEGLMKV 11 Unmodified _RLGEAEGLMKV_ 0 0 0 nc|ENSG00000157637|Q9HBR0-3|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10 nc|ENSG00000157637|Q9HBR0-3|SLC38A10 nc|ENSG00000157637|Q9HBR0-3|SLC38A10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2752075195312 2 601.831723 1201.64889 0.19298 0.00011614 0.54356 0.00032713 0.73654 0.00044327 601.8318389926247 91.753 0.5563 87.945 87.652 88.208 -3.8083 24 15 2 0 0 0 0.44363 2 17560 17560;17575 41.347 16.356 1 3382700 38258 5134 25688 25704 37611;37612 37611 0.056134152084496236 RLGELNWGV 9 Unmodified _RLGELNWGV_ 0 0 0 REV__APOA5|p.E156Kfs*44|1|0.35|ENSG00000110243|chr11:116790763-116790763|C/-|frameshift_variant REV__APOA5|p.E156Kfs*44|1|0.35|ENSG00000110243|chr11:116790763-116790763|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2591552734375 2 522.285266 1042.55598 0.15753 8.2274E-05 0.53794 0.00028096 0.69547 0.00036323 522.2854144578378 86.734 0.49926 83.005 82.728 83.227 -3.7289 19 13 2 0 0 0 0.71527 1 16584 16584 13.906 4.5229 1 1840600 + 38259 13084 25689 25705 37613 37613 0.036402785373638835 RLGGGGGG 8 Unmodified _RLGGGGGG_ 0 0 0 ENST00000375678.7_3_20:31120210-31123457:-|nuORF REV__ENST00000380615.7_1_13:30881495-30881612:-|nuORF REV__ENST00000380615.7_1_13:30881495-30881612:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7633056640625 1 630.331799 629.324522 0.71495 0.00045066 2.8361 0.0017877 3.551 0.0022383 630.3369801792928 163.86 0.13754 158.8 158.73 158.86 -5.0648 5 3 2 0 0 0 1.0271 1 31930 31930 2.5775 0 1 3085100 38260 9238 25690 25706 37614 37614 -0.004967243736587079 RLGMKCIFR 9 Unmodified _RLGMKCIFR_ 0 0 0 REV__ENST00000421648.1_1_7:143104969-143112281:+|nuORF REV__ENST00000421648.1_1_7:143104969-143112281:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21185302734375 3 375.212418 1122.61542 -2.0256 -0.00076004 0.54561 0.00020472 -1.48 -0.00055532 375.212610017636 17.23 0.45218 15.715 15.557 16.01 -1.5148 36 12 4 0 0 0 0.64764 1 2525 2525 0.96228 0 1 12426000 + 38261 21513 25691 25707 37615 37615 0.0590213495554508 RLGPRGLPL 9 Unmodified _RLGPRGLPL_ 0 0 0 nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant nc|ENSG00000138448|P06756-2|ITGAV nc|ENSG00000138448|P06756-2|ITGAV MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2686462402344 2 489.813993 977.613434 0.34011 0.00016659 -0.074294 -3.639E-05 0.26582 0.0001302 489.8139345254527 93.339 0.61081 89.196 88.802 89.413 -4.1435 29 17 2 0 0 0 0.5428 1 17741 17741 4.897 1.6157 1 1235000 38262 4173 25692 25708 37616 37616 0.12373165533620067 RLGPVPPGL 9 Unmodified _RLGPVPPGL_ 0 0 0 nc|ENSG00000146833|Q9C037-3|TRIM4;TRIM4|p.N373Tfs*57|1|0.3|ENSG00000146833|chr7:99892548-99892548|T/-|frameshift_variant;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037|TRIM4 nc|ENSG00000146833|Q9C037-3|TRIM4 nc|ENSG00000146833|Q9C037-3|TRIM4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7533264160156 2 453.281995 904.549437 -0.53694 -0.00024339 0.68004 0.00030825 0.14309 6.4862E-05 453.28222307771136 109.45 2.6404 105.07 104.02 106.66 -4.3776 154 75 3 0 0 0 0.5464 1 21450 21450 4.7159 2.0847 1 3701000 38263 4673 25693 25709 37617 37617 0.09334385376666887 RLGSTVFV 8 Unmodified _RLGSTVFV_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 439.2304992675781 2 439.758352 877.502152 -0.017756 -7.8082E-06 0.089518 3.9366E-05 0.071762 3.1558E-05 439.7583648239398 95.022 0.68987 95.022 94.628 95.318 0 27 19 2 0 0 0 0.83238 1 18602 18602 14.838 12.195 1 1785500 38264 1899 25694 25710 37618 37618 0.05850106105663144 RLGSTVFV 8 Unmodified _RLGSTVFV_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 439.758352 877.502152 -0.095793 -4.2126E-05 0.46872 0.00020612 0.37293 0.000164 439.75844742110627 98.789 0.7645 94.657 94.193 94.957 -4.1326 -0.088018 0.00031154 NaN 14.838 34 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1503500 38265 1899 25694 25710 0.05850106105663144 RLGSTVFV 8 Unmodified _RLGSTVFV_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 439.758352 877.502152 0.174 7.6517E-05 -0.10189 -4.4807E-05 0.072106 3.1709E-05 439.7582103093134 98.864 0.6319 94.594 94.297 94.929 -4.2692 -0.15024 -0.00019032 NaN 14.838 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1311900 38266 1899 25694 25710 0.05850106105663144 RLGSTVFV 8 Unmodified _RLGSTVFV_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 439.758352 877.502152 -0.023177 -1.0192E-05 -0.086647 -3.8104E-05 -0.10982 -4.8296E-05 439.75829555120845 98.662 0.63567 94.706 94.299 94.935 -3.9564 -0.038718 -0.00017692 NaN 14.838 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1442400 38267 1899 25694 25710 0.05850106105663144 RLGSTVFVA 9 Unmodified _RLGSTVFVA_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 476.2485656738281 2 475.276909 948.539266 0.023076 1.0967E-05 -0.48977 -0.00023278 -0.4667 -0.00022181 475.2767618130316 96.571 0.72944 92.473 92.076 92.805 -4.0978 67 20 5 0 0 0 0.25976 1 18946 18946 32.616 26.225 1 6192000 38268 1899 25695 25711 37619 37619 0.06293777651421806 RLGSTVFVA 9 Unmodified _RLGSTVFVA_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 475.276909 948.539266 -0.33653 -0.00015995 0.35589 0.00016915 0.019354 9.1983E-06 475.2770297383261 92.743 0.51803 92.743 92.405 92.923 0 0.17107 0.00053836 NaN 32.616 27 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4950400 38269 1899 25695 25711 0.06293777651421806 RLGSTVFVA 9 Unmodified _RLGSTVFVA_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 475.276909 948.539266 0.092457 4.3943E-05 -0.40268 -0.00019138 -0.31022 -0.00014744 475.2768703947497 96.788 0.6583 92.553 92.16 92.818 -4.2348 -0.018895 -0.00018269 NaN 32.616 61 18 4 NaN NaN NaN NaN 0 NaN NaN 0 4136000 38270 1899 25695 25711 0.06293777651421806 RLGSTVFVA 9 Unmodified _RLGSTVFVA_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.M346Wfs*22|1|0.25|ENSG00000099783|chr19:8473699-8473699|A/-|frameshift_variant ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 475.276909 948.539266 -0.029642 -1.4088E-05 -0.38726 -0.00018406 -0.4169 -0.00019814 475.27683067550834 96.438 0.69997 92.518 92.153 92.853 -3.9194 -0.05368 -0.00016804 NaN 32.616 61 19 4 NaN NaN NaN NaN 0 NaN NaN 0 3945900 38271 1899 25695 25711 0.06293777651421806 RLGVISKV 8 Unmodified _RLGVISKV_ 0 0 0 HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.R672Kfs*9|1|0.35|ENSG00000092148|chr14:31150141-31150142|-/C|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2171325683594 2 436.28982 870.565087 0.13131 5.7288E-05 -0.08796 -3.8376E-05 0.043346 1.8912E-05 436.28973529300856 53.888 0.82344 53.888 53.53 54.354 0 55 22 3 0 0 0 0.44108 1 10262 10262 30.637 0 1 8589700 38272 1827 25696 25712 37620 37620 0.12462671893706556 RLGVISKV 8 Unmodified _RLGVISKV_ 0 0 0 HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.R672Kfs*9|1|0.35|ENSG00000092148|chr14:31150141-31150142|-/C|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2323303222656 2 436.28982 870.565087 -0.29025 -0.00012663 0.16351 7.1336E-05 -0.12674 -5.5296E-05 436.2898440721077 56.314 0.75692 53.419 53.099 53.856 -2.8944 46 21 3 0 0 0 0.73833 2 10792 10792;10807 8.7454 0 1 11888000 38273 1827 25696 25712 37621;37622 37621 0.12462671893706556 RLGVISKV 8 Unmodified _RLGVISKV_ 0 0 0 HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.R672Kfs*9|1|0.35|ENSG00000092148|chr14:31150141-31150142|-/C|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2296142578125 2 436.28982 870.565087 0.031538 1.376E-05 0.051447 2.2446E-05 0.082985 3.6205E-05 436.28975235587626 56.667 0.63306 53.477 53.194 53.827 -3.1895 45 17 3 0 0 0 8448 1 10464 10464 9.2438 3.038 1 16005000 38274 1827 25696 25712 37623 37623 0.12462671893706556 RLGVISKV 8 Unmodified _RLGVISKV_ 0 0 0 HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.R672Kfs*9|1|0.35|ENSG00000092148|chr14:31150141-31150142|-/C|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.225830078125 2 436.28982 870.565087 -0.15266 -6.6603E-05 0.13966 6.0933E-05 -0.012995 -5.6695E-06 436.2898449811015 56.704 0.77782 53.528 53.224 54.002 -3.1761 52 21 3 0 0 0 8448 2 10514 10514;10538 46.022 13.125 1 12479000 38275 1827 25696 25712 37624;37625 37624 0.12462671893706556 RLHDENILL 9 Unmodified _RLHDENILL_ 0 0 0 RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant;RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2146301269531 3 374.880379 1121.61931 -0.26614 -9.9771E-05 -0.086106 -3.2279E-05 -0.35225 -0.00013205 374.8803811006741 88.196 0.6948 88.196 87.883 88.578 0 33 19 2 0 0 0 0.37634 3 17191 17191;17238;17254 27.223 20.122 1 3032800 38276 2193 25697 25713 37626;37627;37628 37626 0.06336219254626485 RLHDENILL 9 Unmodified _RLHDENILL_ 0 0 0 RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant;RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2132873535156 3 374.880379 1121.61931 -0.27246 -0.00010214 0.12579 4.7155E-05 -0.14667 -5.4985E-05 374.8803985879804 91.579 0.74994 87.654 87.306 88.056 -3.9251 55 21 3 0 0 0 0.6598 1 17998 17998 8.9762 1.8745 1 2946500 38277 2193 25697 25713 37629 37629 0.06336219254626485 RLHDENILL 9 Unmodified _RLHDENILL_ 0 0 0 RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant;RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2144470214844 3 374.880379 1121.61931 0.29914 0.00011214 -0.59667 -0.00022368 -0.29752 -0.00011154 374.8801629916243 91.795 0.65588 87.701 87.358 88.014 -4.0946 41 18 3 0 0 0 0.41444 1 17481 17481 24.882 11.267 1 2898000 38278 2193 25697 25713 37630 37630 0.06336219254626485 RLHDENILL 9 Unmodified _RLHDENILL_ 0 0 0 RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant;RPGRIP1L|p.D821*|1|0.35|ENSG00000103494|chr16:53645847-53645848|-/A|frameshift_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2143249511719 3 374.880379 1121.61931 -0.56335 -0.00021119 0.17712 6.6399E-05 -0.38623 -0.00014479 374.88049975684294 91.584 0.69604 87.776 87.374 88.07 -3.8083 35 19 2 0 0 0 0.15889 3 17536 17491;17536;17581 36.81 27.917 1 3459900 38279 2193 25697 25713 37631;37632;37633 37632 0.06336219254626485 RLHEAHAQ 8 Unmodified _RLHEAHAQ_ 0 0 0 P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant;ENSG00000110811|ENST00000290510|P3H3;ENST00000538102.5_1_12:6939819-6943209:+|nuORF;ENST00000536140.5_1_12:6939022-6940400:+|nuORF;nc|ENSG00000110811|Q8IVL6-2|P3H3 P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant P3H3|p.V480Cfs*59|1|0.31|ENSG00000110811|chr12:6834026-6834026|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2501220703125 2 481.251757 960.488962 NaN NaN NaN NaN NaN NaN NaN 22.822 1 21.368 20.868 21.868 -1.4535 0 0 0 0.23664 1 3655 3655 3.2813 3.2173 1 38280 12745 25698 25714 37634 37634 0.00713668046262228 RLHEKGVLL 9 Unmodified _RLHEKGVLL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 355.1922912597656 3 355.557348 1063.65021 -0.78452 -0.00027894 0.63092 0.00022433 -0.1536 -5.4613E-05 355.5575167047832 46.491 0.65909 43.624 43.336 43.995 -2.8666 43 18 3 0 0 0 0.10782 1 8442 8442 37.075 28.919 1 2983000 38281 4315 25699 25715 37635 37635 0.1209341735950602 RLHEKGVLL 9 Unmodified _RLHEKGVLL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 355.557348 1063.65021 -0.0058576 -2.0827E-06 0.069343 2.4656E-05 0.063486 2.2573E-05 355.5573776606462 43.896 0.52108 43.896 43.569 44.09 0 0.21132 -0.00016273 NaN 37.075 37 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3121600 38282 4315 25699 25715 0.1209341735950602 RLHEKGVLL 9 Unmodified _RLHEKGVLL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 355.557348 1063.65021 -0.30293 -0.00010771 0.1965 6.9866E-05 -0.10643 -3.7841E-05 355.5573595682688 46.441 0.62945 43.6 43.276 43.906 -2.8409 -0.084337 -2.71E-05 NaN 37.075 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3601300 38283 4315 25699 25715 0.1209341735950602 RLHEKGVLL 9 Unmodified _RLHEKGVLL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 355.557348 1063.65021 -0.004953 -1.7611E-06 -0.075588 -2.6876E-05 -0.080541 -2.8637E-05 355.5572711261743 46.483 0.55993 43.617 43.344 43.904 -2.8653 -0.06694 -0.00031733 NaN 37.075 40 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3228300 38284 4315 25699 25715 0.1209341735950602 RLHEKIQEA 9 Unmodified _RLHEKIQEA_ 0 0 0 ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2121887207031 3 375.212128 1122.61456 -0.25444 -9.5468E-05 -0.33799 -0.00012682 -0.59243 -0.00022229 375.21201776444997 15.831 0.41683 15.831 15.641 16.058 0 34 11 4 0 0 0 0.037046 1 2424 2424 77.049 29.317 1 20845000 38285 4736 25700 25716 37636 37636 0.058153351118335195 RLHEKIQEA 9 Unmodified _RLHEKIQEA_ 0 0 0 ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2119140625 3 375.212128 1122.61456 -0.5198 -0.00019504 -0.012679 -4.7573E-06 -0.53248 -0.00019979 375.2121141080342 17.078 0.31159 15.862 15.705 16.016 -1.2159 27 8 4 0 0 0 0.053446 3 2718 2705;2714;2718 89.193 62.198 1 14012000 38286 4736 25700 25716 37637;37638;37639 37639 0.058153351118335195 RLHEKIQEA 9 Unmodified _RLHEKIQEA_ 0 0 0 ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 374.8588562011719 3 375.212128 1122.61456 -0.46231 -0.00017347 -0.31679 -0.00011886 -0.7791 -0.00029233 375.21199523011813 17.09 0.38045 15.818 15.66 16.041 -1.2722 28 10 4 0 0 0 0.074448 1 2509 2509 74.216 37.141 1 11513000 38287 4736 25700 25716 37640 37640 0.058153351118335195 RLHEKIQEA 9 Unmodified _RLHEKIQEA_ 0 0 0 ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.53729248046875 3 375.212128 1122.61456 -2.0256 -0.00076004 1.3171 0.00049419 -0.70854 -0.00026585 375.212610017636 17.23 0.45218 15.715 15.557 16.01 -1.5148 36 12 4 0 0 0 0.037776 4 2488 2476;2479;2488;2526 161.22 100.75 1 12426000 38288 4736 25700 25716 37641;37642;37643;37644 37643 0.058153351118335195 RLHEKVNII 9 Unmodified _RLHEKVNII_ 0 0 0 ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7 ENST00000425198.1_1_7:35872473-35938044:+|nuORF ENST00000425198.1_1_7:35872473-35938044:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2120666503906 3 374.564502 1120.67168 -0.34373 -0.00012875 0.089876 3.3664E-05 -0.25386 -9.5086E-05 374.5644632624532 49.373 0.42455 46.492 46.235 46.66 -2.8811 20 11 3 0 0 0 0.5428 1 9386 9386 4.897 1.6157 1 1090400 38289 3229 25701 25717 37645 37645 0.11616802388221004 RLHFAFAT 8 Unmodified _RLHFAFAT_ 0 0 0 REV__ENSG00000132207|ENST00000251303|SLX1A REV__ENSG00000132207|ENST00000251303|SLX1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.777099609375 2 481.763969 961.513385 NaN NaN NaN NaN NaN NaN NaN 9.1184 1 8.3241 7.8241 8.8241 -0.79424 0 0 0 0.21486 1 1025 1025 0.69038 0 1 + 38290 16101 25702 25718 37646 37646 0.031089281997992657 RLHGAIRP 8 Unmodified _RLHGAIRP_ 0 0 0 REV__ENST00000411753.1_1_3:31494580-31495033:+|nuORF REV__ENST00000411753.1_1_3:31494580-31495033:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2432861328125 2 460.28286 918.551168 NaN NaN NaN NaN NaN NaN NaN 107.94 1 103.8 103.3 104.3 -4.135 0 0 0 0.2396 1 20764 20764 0.0082765 0 1 + 38291 21426 25703 25719 37647 37647 0.08863439185256539 RLHLKKKKK 9 Unmodified _RLHLKKKKK_ 0 0 0 ENST00000344862.9_1_12:44119226-44119532:-|nuORF;AluSz_dup101715|chr22:30660842-30661140:-|1.4532773959523846|0.4395440284853391|1.73|482.0|7|2|sense;AluSg7_dup3470|chr7:92112548-92112847:+|1.1476481431393448|0.0120808203020236|6.57|479.0|11|3|sense;AluSg_dup14868|chr7:101199001-101199301:-|1.043937374381135|0.291097903465529|1.84|470.0|10|3|sense;AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense ENST00000344862.9_1_12:44119226-44119532:-|nuORF ENST00000344862.9_1_12:44119226-44119532:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2730102539062 2 589.914042 1177.81353 NaN NaN NaN NaN NaN NaN NaN 55.753 1 52.563 52.063 53.063 -3.1895 0 0 0 0.23508 1 10313 10313 0 0 1 38292 8899 25704 25720 37648 37648 0.23173640201184753 RLHLKKKKK 9 Unmodified _RLHLKKKKK_ 0 0 0 ENST00000344862.9_1_12:44119226-44119532:-|nuORF;AluSz_dup101715|chr22:30660842-30661140:-|1.4532773959523846|0.4395440284853391|1.73|482.0|7|2|sense;AluSg7_dup3470|chr7:92112548-92112847:+|1.1476481431393448|0.0120808203020236|6.57|479.0|11|3|sense;AluSg_dup14868|chr7:101199001-101199301:-|1.043937374381135|0.291097903465529|1.84|470.0|10|3|sense;AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense ENST00000344862.9_1_12:44119226-44119532:-|nuORF ENST00000344862.9_1_12:44119226-44119532:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2660522460938 2 589.914042 1177.81353 0.59039 0.00034828 -1.4511 -0.00085603 -0.86072 -0.00050775 589.9132896219946 159.62 0.14172 154.35 154.29 154.43 -5.2748 5 3 2 0 0 0 0.65565 1 31000 31000 0 0 1 1147200 38293 8899 25704 25720 37649 37649 0.23173640201184753 RLHLLRPSLV 10 Unmodified _RLHLLRPSLV_ 0 0 0 REV__WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant REV__WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2857666015625 2 602.387857 1202.76116 NaN NaN NaN NaN NaN NaN NaN 75.215 1 71.582 71.082 72.082 -3.6337 0 0 0 2.8426 1 14297 14297 0.0013812 0 1 + 38294 25544 25705 25721 37650 37650 0.1678905706758087 RLHMHLIRHQK 11 Unmodified _RLHMHLIRHQK_ 0 0 0 ZNF780B|p.K620Dfs*2|1|0.08|ENSG00000128000|chr19:40035001-40035002|-/TAATC|frameshift_variant;ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A;ENSG00000128000|ENST00000434248|ZNF780B ZNF780B|p.K620Dfs*2|1|0.08|ENSG00000128000|chr19:40035001-40035002|-/TAATC|frameshift_variant ZNF780B|p.K620Dfs*2|1|0.08|ENSG00000128000|chr19:40035001-40035002|-/TAATC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26458740234375 3 490.285856 1467.83574 NaN NaN NaN NaN NaN NaN NaN 72.722 1 69.411 68.911 69.911 -3.3107 0 0 0 0.22632 1 14173 14173 1.4551 0.8698 1 38295 3502 25706 25722 37651 37651 0.12053496607313718 RLHNQKTGQEV 11 Unmodified _RLHNQKTGQEV_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.5710754394531 3 437.237225 1308.68985 -0.78754 -0.00034434 0.60186 0.00026315 -0.18569 -8.1189E-05 437.23749148416766 13.76 0.1442 12.645 12.519 12.663 -1.1142 5 3 2 0 0 0 0.056433 1 2013 2013 33.445 30.373 1 580280 38296 3046 25707 25723 37652 37652 0.0478489257225192 RLHPLYHS 8 Unmodified _RLHPLYHS_ 0 0 0 REV__nc|ENSG00000106336|O75426-2|FBXO24 REV__nc|ENSG00000106336|O75426-2|FBXO24 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.21484375 3 341.522526 1021.54575 -0.23315 -7.9625E-05 0.15204 5.1923E-05 -0.081111 -2.7701E-05 341.52255111963296 96.328 0.54554 92.278 92.026 92.572 -4.0496 19 15 2 0 0 0 1.0277 1 18885 18885 1.6526 0 1 990170 + 38297 15044 25708 25724 37653 37653 0.0358371560280375 RLHRLLLLLL 10 Unmodified _RLHRLLLLLL_ 0 0 0 ENST00000300853.7_1_19:45912690-45912933:-|nuORF ENST00000300853.7_1_19:45912690-45912933:-|nuORF ENST00000300853.7_1_19:45912690-45912933:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7781372070312 2 630.43735 1258.86015 NaN NaN NaN NaN NaN NaN NaN 168.73 1 163.86 163.36 164.36 -4.873 0 0 0 0.22588 1 33285 33285 0 0 1 38298 8551 25709 25725 37654 37654 0.24107080032513295 RLHVDQIKL 9 Unmodified _RLHVDQIKL_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.8842468261719 3 374.564502 1120.67168 -0.34373 -0.00012875 0.089876 3.3664E-05 -0.25386 -9.5086E-05 374.5644632624532 49.373 0.42455 46.492 46.235 46.66 -2.8811 20 11 3 0 0 0 0.66316 1 9381 9381 8.7454 1.1365 1 1090400 + 38299 14076 25710 25726 37655 37655 0.11616802388221004 RLHVDQIKL 9 Unmodified _RLHVDQIKL_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 374.564502 1120.67168 0.031524 1.1808E-05 0.063208 2.3675E-05 0.094732 3.5483E-05 374.56444936528555 49.573 0.55616 46.574 46.242 46.798 -2.999 0.04085 -1.3889E-05 NaN 8.7454 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 977850 + 38300 14076 25710 25726 0.11616802388221004 RLIDKSFSI 9 Unmodified _RLIDKSFSI_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;FRAS1|p.V2385Sfs*37|1|0.28|ENSG00000138759|chr4:78466329-78466329|G/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2130432128906 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 106.05 1 101.79 101.29 102.29 -4.2638 0 0 0 0.22658 1 20875 20875 15.739 6.7624 1 38301 4208 25711 25727 37656 37656 0.0825400488570267 RLIDKSFSI 9 Unmodified _RLIDKSFSI_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;FRAS1|p.V2385Sfs*37|1|0.28|ENSG00000138759|chr4:78466329-78466329|G/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2136535644531 3 360.213358 1077.61824 0.051361 1.8501E-05 0.055156 1.9868E-05 0.10652 3.8369E-05 360.21322351864137 105.76 0.31593 101.67 101.57 101.88 -4.0913 9 8 2 0 0 0 0.58921 1 20339 20339 8.1555 3.2585 1 589760 38302 4208 25711 25727 37657 37657 0.0825400488570267 RLIDLGVGL 9 Unmodified _RLIDLGVGL_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7248229980469 2 478.300384 954.586216 -0.070722 -3.3826E-05 0.0083398 3.9889E-06 -0.062382 -2.9837E-05 478.3003773337779 156.88 0.58144 156.88 156.48 157.07 0 29 16 2 0 0 0 0.11836 4 31484 31417;31484;31496;31499 62.573 22.815 1 3705800 38303 2975 25712 25728 37658;37659;37660;37661 37659 0.10710637202555517 RLIDLGVGL 9 Unmodified _RLIDLGVGL_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73095703125 2 478.300384 954.586216 0.19091 9.1313E-05 -0.1358 -6.4952E-05 0.055115 2.6362E-05 478.30028178785113 161.34 0.70438 156.55 156.28 156.99 -4.7952 33 19 2 0 0 0 0.15889 1 32153 32153 22.736 0 1 4993500 38304 2975 25712 25728 37662 37662 0.10710637202555517 RLIDLGVGL 9 Unmodified _RLIDLGVGL_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7212219238281 2 478.300384 954.586216 0.18363 8.7831E-05 -0.18204 -8.7072E-05 0.0015876 7.5936E-07 478.30010141177536 162.12 0.64592 156.98 156.62 157.26 -5.1438 27 18 2 0 0 0 0.043105 1 31485 31485 92.491 31.134 1 3843600 38305 2975 25712 25728 37663 37663 0.10710637202555517 RLIDLGVGL 9 Unmodified _RLIDLGVGL_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.300384 954.586216 0.46588 0.00022283 -0.02047 -9.7906E-06 0.44541 0.00021304 478.3002455076017 162.18 0.619 156.99 156.58 157.2 -5.1878 0.14094 4.9396E-05 NaN 92.491 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2829700 38306 2975 25712 25728 0.10710637202555517 RLIDLHTNV 9 Unmodified _RLIDLHTNV_ 0 0 0 ENST00000555259.5_1_14:31112578-31185169:+|nuORF;SCFD1|p.T407I|1|0.43|ENSG00000092108|chr14:30675043-30675043|C/T|missense_variant;ENST00000555953.1_1_14:31142550-31144373:+|nuORF;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1 ENST00000555259.5_1_14:31112578-31185169:+|nuORF ENST00000555259.5_1_14:31112578-31185169:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2748413085938 2 540.811648 1079.60874 0.34029 0.00018403 -0.11658 -6.3048E-05 0.22371 0.00012098 540.8114315444532 85.065 0.58853 85.065 84.769 85.357 0 32 16 3 0 0 0 0.091344 1 16605 16605 76.825 26.892 1 4214700 38307 11230 25713 25729 37664 37664 0.07212236600162214 RLIEDLWYYWL 11 Unmodified _RLIEDLWYYWL_ 0 0 0 ENST00000507114.1_1_17:48777854-48785015:-|nuORF ENST00000507114.1_1_17:48777854-48785015:-|nuORF ENST00000507114.1_1_17:48777854-48785015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4110107421875 2 785.408652 1568.80275 NaN NaN NaN NaN NaN NaN NaN 156.77 1 151.98 151.48 152.48 -4.7885 0 0 0 0.23698 1 31175 31175 1.1933 0 1 38308 10690 25714 25730 37665 37665 0.04110148245626988 RLIEESVTV 9 Unmodified _RLIEESVTV_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6968383789062 2 523.298039 1044.58152 0.16173 8.4632E-05 -0.26527 -0.00013882 -0.10354 -5.4184E-05 523.2979212299368 91.932 0.85973 88.123 87.686 88.546 -3.8083 62 24 3 0 0 0 0.15889 1 17652 17652 36.81 31.979 1 15258000 38309 1154 25715 25731 37666 37666 0.061017082691250835 RLIEESVTV 9 Unmodified _RLIEESVTV_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.298039 1044.58152 0.086087 4.5049E-05 -0.40031 -0.00020948 -0.31422 -0.00016443 523.2979464039696 88.27 0.76365 88.27 87.919 88.682 0 0.12833 -0.0003692 NaN 36.81 55 21 3 NaN NaN NaN NaN 0 NaN NaN 0 13657000 38310 1154 25715 25731 0.061017082691250835 RLIERQKRVYW 11 Unmodified _RLIERQKRVYW_ 0 0 0 REV__nc|ENSG00000275410|P35680-3|HNF1B REV__nc|ENSG00000275410|P35680-3|HNF1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 309.626220703125 5 310.185119 1545.88921 -0.67037 -0.00020794 -1.0216 -0.00031689 -1.692 -0.00052483 310.18486146291775 13.558 0.1721 12.385 12.279 12.451 -1.173 6 4 2 0 0 0 0.89135 1 1783 1783 0.00056442 0 1 269090 + 38311 19934 25716 25732 37667 37667 0.13810572590818992 RLIIIIGEEL 10 Unmodified _RLIIIIGEEL_ 0 0 0 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.24810791015625 3 390.24818 1167.72271 NaN NaN NaN NaN NaN NaN NaN 71.873 1 68.335 67.835 68.835 -3.5385 0 0 0 0.22588 1 13629 13629 0.69767 0 1 38312 12378 25717 25733 37668 37668 0.1455570664240895 RLIKDTLAL 9 Unmodified _RLIKDTLAL_ 0 0 0 ENSG00000123395|ENST00000336854|ATG101 ENSG00000123395|ENST00000336854|ATG101 ENSG00000123395|ENST00000336854|ATG101 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2763061523438 2 521.834591 1041.65463 -0.41816 -0.00021821 0.27306 0.00014249 -0.1451 -7.5716E-05 521.8344861942988 101.25 0.47337 96.952 96.604 97.077 -4.297 18 13 2 0 0 0 0.27986 1 19373 19373 32.786 7.3864 1 940550 38313 3266 25718 25734 37669 37669 0.13546881782394848 RLIKDTLAL 9 Unmodified _RLIKDTLAL_ 0 0 0 ENSG00000123395|ENST00000336854|ATG101 ENSG00000123395|ENST00000336854|ATG101 ENSG00000123395|ENST00000336854|ATG101 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.834591 1041.65463 -0.21012 -0.00010965 -0.71162 -0.00037135 -0.92174 -0.00048099 521.834416432589 101.08 0.38434 96.919 96.666 97.05 -4.1594 -0.036258 -0.00047205 NaN 32.786 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 894460 38314 3266 25718 25734 0.13546881782394848 RLIKDTLAL 9 Unmodified _RLIKDTLAL_ 0 0 0 ENSG00000123395|ENST00000336854|ATG101 ENSG00000123395|ENST00000336854|ATG101 ENSG00000123395|ENST00000336854|ATG101 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.834591 1041.65463 0.42356 0.00022103 -0.5849 -0.00030522 -0.16134 -8.4194E-05 521.8342299285107 100.99 0.3858 96.996 96.789 97.175 -3.9895 0.04022 -0.00033979 NaN 32.786 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 889310 38315 3266 25718 25734 0.13546881782394848 RLIKLLIIN 9 Unmodified _RLIKLLIIN_ 0 0 0 REV__ENST00000532383.5_1_11:10828794-10828950:-|nuORF REV__ENST00000532383.5_1_11:10828794-10828950:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.9254150390625 3 365.92526 1094.75395 NaN NaN NaN NaN NaN NaN NaN 12.322 1 11.312 10.812 11.812 -1.0098 0 0 0 0.23508 1 1701 1701 0 0 1 + 38316 22786 25719 25735 37670 37670 0.210363244671953 RLILKIKL 8 Unmodified _RLILKIKL_ 0 0 0 REV__METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant REV__METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 498.8681640625 2 498.868237 995.721922 NaN NaN NaN NaN NaN NaN NaN 9.4324 1 8.3679 7.8679 8.8679 -1.0645 0 0 0 0.21486 1 1007 1007 0 0 1 + 38317 23848 25720 25736 37671 37671 0.22388956784004677 RLILKIKL 8 Unmodified _RLILKIKL_ 0 0 0 REV__METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant REV__METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.912841796875 3 332.914584 995.721922 NaN NaN NaN NaN NaN NaN NaN 9.5595 1 8.5248 8.0248 9.0248 -1.0347 0 0 0 0.21486 1 984 984 0 0 1 + 38318 23848 25720 25736 37672 37672 0.22388956784004677 RLIMKCAK 8 Unmodified _RLIMKCAK_ 0 0 0 REV__VAV2|p.F543I|1|0.03|ENSG00000160293|chr9:133784324-133784324|A/T|missense_variant REV__VAV2|p.F543I|1|0.03|ENSG00000160293|chr9:133784324-133784324|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78533935546875 2 481.785533 961.556513 NaN NaN NaN NaN NaN NaN NaN 156.87 1 156.87 156.37 157.37 0 0 0 0 0.21486 1 31476 31476 8.5933 0 1 + 38319 25533 25721 25737 37673 37673 0.07419658661217454 RLINSYAEL 9 Unmodified _RLINSYAEL_ 0 0 0 REV__ENST00000265138.3_1_5:90667021-90667204:-|nuORF REV__ENST00000265138.3_1_5:90667021-90667204:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 105.96 1 101.58 101.08 102.08 -4.3764 0 0 0 0.23508 1 20317 20317 7.609 2.7119 1 + 38320 20241 25722 25738 37674 37674 0.046171279889904326 RLIRKTKLHRY 11 Unmodified _RLIRKTKLHRY_ 0 0 0 REV__nc|ENSG00000163714|O15042-3|U2SURP REV__nc|ENSG00000163714|O15042-3|U2SURP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3897094726562 2 742.470244 1482.92593 NaN NaN NaN NaN NaN NaN NaN 172.88 1 168 167.5 168.5 -4.881 0 0 0 0.22632 1 34342 34342 0.026206 0 1 + 38321 24131 25723 25739 37675 37675 0.203788692074113 RLISKFDTV 9 Unmodified _RLISKFDTV_ 0 0 0 ENST00000528228.1_1_8:14166702-14167074:+|nuORF;ENST00000507665.5_1_4:99808220-99850263:-|nuORF;ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E ENST00000528228.1_1_8:14166702-14167074:+|nuORF ENST00000528228.1_1_8:14166702-14167074:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2132873535156 3 360.213358 1077.61824 -0.27674 -9.9685E-05 0.27047 9.7428E-05 -0.0062658 -2.257E-06 360.21338668465876 72.607 0.44597 72.607 72.404 72.85 0 26 12 3 0 0 0 0.29284 2 14113 14056;14113 32.037 17.632 1 8729900 38322 4856 25724 25740 37676;37677 37677 0.0825400488570267 RLISKFDTV 9 Unmodified _RLISKFDTV_ 0 0 0 ENST00000528228.1_1_8:14166702-14167074:+|nuORF;ENST00000507665.5_1_4:99808220-99850263:-|nuORF;ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E ENST00000528228.1_1_8:14166702-14167074:+|nuORF ENST00000528228.1_1_8:14166702-14167074:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2137145996094 3 360.213358 1077.61824 -0.30078 -0.00010834 0.30551 0.00011005 0.0047352 1.7057E-06 360.2134051205982 76.204 0.56838 72.789 72.507 73.075 -3.4151 37 15 3 0 0 0 0.1629 1 14835 14835 42.312 22.951 1 6198400 38323 4856 25724 25740 37678 37678 0.0825400488570267 RLISKFDTV 9 Unmodified _RLISKFDTV_ 0 0 0 ENST00000528228.1_1_8:14166702-14167074:+|nuORF;ENST00000507665.5_1_4:99808220-99850263:-|nuORF;ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E ENST00000528228.1_1_8:14166702-14167074:+|nuORF ENST00000528228.1_1_8:14166702-14167074:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2014465332031 3 360.213358 1077.61824 0.085831 3.0917E-05 -0.16146 -5.8162E-05 -0.075634 -2.7244E-05 360.2132307106752 76.518 0.57722 72.795 72.447 73.024 -3.7227 40 16 3 0 0 0 0.13707 3 14468 14454;14468;14512 46.022 17.623 1 3884100 38324 4856 25724 25740 37679;37680;37681 37680 0.0825400488570267 RLISKFDTV 9 Unmodified _RLISKFDTV_ 0 0 0 ENST00000528228.1_1_8:14166702-14167074:+|nuORF;ENST00000507665.5_1_4:99808220-99850263:-|nuORF;ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E ENST00000528228.1_1_8:14166702-14167074:+|nuORF ENST00000528228.1_1_8:14166702-14167074:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013244628906 3 360.213358 1077.61824 -0.505 -0.00018191 0.61783 0.00022255 0.11283 4.0642E-05 360.2135328696652 76.338 0.62012 72.705 72.375 72.995 -3.6337 43 17 3 0 0 0 0.11836 2 14520 14501;14520 49.527 26.869 1 4532900 38325 4856 25724 25740 37682;37683 37683 0.0825400488570267 RLKDGEETT 9 Unmodified _RLKDGEETT_ 0 0 0 nc|ENSG00000167107|Q96CM8-4|ACSF2;nc|ENSG00000167107|Q96CM8-3|ACSF2;ENSG00000167107|ENST00000300441|ACSF2;nc|ENSG00000167107|Q96CM8-2|ACSF2 nc|ENSG00000167107|Q96CM8-4|ACSF2 nc|ENSG00000167107|Q96CM8-4|ACSF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.1818542480469 3 350.180494 1047.51965 NaN NaN NaN NaN NaN NaN NaN 76.734 1 73.1 72.6 73.6 -3.6337 0 0 0 0.23508 1 14609 14609 4.897 1.31 1 38326 5784 25725 25741 37684 37684 -0.0022064315000989154 RLKDKIPNV 9 Unmodified _RLKDKIPNV_ 0 0 0 ENSG00000109805|ENST00000251496|NCAPG;ENST00000557911.1_1_15:30297419-30297614:+|nuORF;ENST00000513226.1_1_4:17812700-17814869:+|nuORF;NCAPG|p.G315Efs*4|1|0.05|ENSG00000109805|chr4:17817428-17817429|-/A|frameshift_variant;NCAPG|p.L316Nfs*11|1|0.05|ENSG00000109805|chr4:17817429-17817430|-/CA|frameshift_variant;NCAPG|p.I662Nfs*7|1|0.37|ENSG00000109805|chr4:17834391-17834392|-/A|frameshift_variant ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.5235900878906 3 361.560869 1081.66078 -0.78401 -0.00028347 0.99332 0.00035914 0.20931 7.5677E-05 361.5611224353696 46.506 1.3449 43.639 42.963 44.308 -2.8666 76 38 3 0 0 0 0.10782 1 8440 8440 37.075 28.919 1 1816800 38327 2543 25726 25742 37685 37685 0.1232140001393418 RLKEYRVFFLL 11 Unmodified _RLKEYRVFFLL_ 0 0 0 ENST00000424459.7_2_5:56471743-56471803:+|nuORF ENST00000424459.7_2_5:56471743-56471803:+|nuORF ENST00000424459.7_2_5:56471743-56471803:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 495.2964782714844 3 495.297645 1482.87111 NaN NaN NaN NaN NaN NaN NaN 14.111 1 12.901 12.401 13.401 -1.2106 0 0 0 0.22632 1 1844 1844 0.03141 0 1 38328 9705 25727 25743 37686 37686 0.14898437616102456 RLKKGDVL 8 Unmodified _RLKKGDVL_ 0 0 0 REV__nc|ENSG00000134532|P35711-4|SOX5 REV__nc|ENSG00000134532|P35711-4|SOX5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17047119140625 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 15.227 1 15.227 14.727 15.727 0 0 0 0 0.21486 1 2309 2309 1.6526 0 1 + 38329 16215 25728 25744 37687 37687 0.11986056922410171 RLKKKKIF 8 Unmodified _RLKKKKIF_ 0 0 0 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 354.2488708496094 3 354.249966 1059.72807 NaN NaN NaN NaN NaN NaN NaN 7.7101 1 7.031 6.531 7.531 -0.67913 0 0 0 0.21486 1 729 729 0 0 1 38330 7110 25729 25745 37688 37688 0.20059475015523276 RLKKKKIF 8 Unmodified _RLKKKKIF_ 0 0 0 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 354.2490539550781 3 354.249966 1059.72807 NaN NaN NaN NaN NaN NaN NaN 178.87 1 174.08 173.58 174.58 -4.7898 0 0 0 0.21486 1 36598 36598 0 0 1 38331 7110 25729 25745 37689 37689 0.20059475015523276 RLKKKKIF 8 Unmodified _RLKKKKIF_ 0 0 0 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 354.2488098144531 3 354.249966 1059.72807 NaN NaN NaN NaN NaN NaN NaN 7.8222 1 6.8073 6.3073 7.3073 -1.0148 0 0 0 0.21486 1 678 678 0 0 1 38332 7110 25729 25745 37690 37690 0.20059475015523276 RLKKKKIF 8 Unmodified _RLKKKKIF_ 0 0 0 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 354.2272033691406 3 354.249966 1059.72807 NaN NaN NaN NaN NaN NaN NaN 100.17 1 96.176 95.676 96.676 -3.9895 0 0 0 0.2396 1 19239 19239 0 0 1 38333 7110 25729 25745 37691 37691 0.20059475015523276 RLKKKRRMQIS 11 Unmodified _RLKKKRRMQIS_ 0 0 0 REV__ENST00000461003.5_1_1:161018520-161018592:-|nuORF REV__ENST00000461003.5_1_1:161018520-161018592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77911376953125 3 481.973278 1442.89801 NaN NaN NaN NaN NaN NaN NaN 145.48 1 140.81 140.31 141.31 -4.6694 0 0 0 0.22632 1 28838 28838 0.50596 0 1 + 38334 21889 25730 25746 37692 37692 0.19427222955664547 RLKKKTTEE 9 Unmodified _RLKKKTTEE_ 0 0 0 REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant REV__AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 378.2164306640625 3 378.227667 1131.66117 NaN NaN NaN NaN NaN NaN NaN 107.8 1 103.67 103.17 104.17 -4.135 0 0 0 0.19638 1 20739 20739 0.073264 0.069883 1 + 38335 12986 25731 25747 37693 37693 0.10060774943121942 RLKKRIRKKEE 11 Unmodified _RLKKRIRKKEE_ 0 0 0 REV__ENST00000509478.5_1_4:89649686-89652602:-|nuORF REV__ENST00000509478.5_1_4:89649686-89652602:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3953247070312 2 742.480808 1482.94706 NaN NaN NaN NaN NaN NaN NaN 169.71 1 164.84 164.34 165.34 -4.873 0 0 0 0.22632 1 33538 33538 0 0 1 + 38336 16468 25732 25748 37694 37694 0.22490834516270297 RLKKTWSKVK 10 Unmodified _RLKKTWSKVK_ 0 0 0 ENSG00000198915|ENST00000395810|RASGEF1A;nc|ENSG00000198915|Q8N9B8-2|RASGEF1A ENSG00000198915|ENST00000395810|RASGEF1A ENSG00000198915|ENST00000395810|RASGEF1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2525939941406 3 425.274952 1272.80303 NaN NaN NaN NaN NaN NaN NaN 153.2 1 147.98 147.48 148.48 -5.2209 0 0 0 0.22588 1 29692 29692 0.15932 0 1 38337 7523 25733 25749 37695 37695 0.17753612756087023 RLKMSGLRY 9 Unmodified _RLKMSGLRY_ 0 0 0 nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2188720703125 3 375.218337 1122.63318 NaN NaN NaN NaN NaN NaN NaN 52.279 1 52.279 51.779 52.779 0 0 0 0 0.23508 1 9935 9935 7.609 0 1 38338 2013 25734 25750 37696 37696 0.07677173482056787 RLKMSGLRY 9 Unmodified _RLKMSGLRY_ 0 0 0 nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21795654296875 3 375.218337 1122.63318 NaN NaN NaN NaN NaN NaN NaN 52.598 1 52.598 52.098 53.098 0 0 0 0 0.23508 1 10000 10000 11.495 0 1 38339 2013 25734 25750 37697 37697 0.07677173482056787 RLKMSGLRY 9 Unmodified _RLKMSGLRY_ 0 0 0 nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21905517578125 3 375.218337 1122.63318 NaN NaN NaN NaN NaN NaN NaN 54.217 1 51.333 50.833 51.833 -2.8837 0 0 0 0.23508 1 10341 10341 7.609 0.88579 1 38340 2013 25734 25750 37698 37698 0.07677173482056787 RLKMSGLRY 9 Unmodified _RLKMSGLRY_ 0 0 0 nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2187194824219 3 375.218337 1122.63318 NaN NaN NaN NaN NaN NaN NaN 55.229 1 52.345 51.845 52.845 -2.8837 0 0 0 0.23508 1 10564 10564 7.609 0 1 38341 2013 25734 25750 37699 37699 0.07677173482056787 RLKMSGLRY 9 Unmodified _RLKMSGLRY_ 0 0 0 nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2185363769531 3 375.218337 1122.63318 NaN NaN NaN NaN NaN NaN NaN 55.77 1 52.886 52.386 53.386 -2.8837 0 0 0 0.23508 1 10677 10677 11.495 0.67078 1 38342 2013 25734 25750 37700 37700 0.07677173482056787 RLKMSGLRY 9 Unmodified _RLKMSGLRY_ 0 0 0 nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 nc|ENSG00000100784|O75582-3|RPS6KA5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2182922363281 3 375.218337 1122.63318 NaN NaN NaN NaN NaN NaN NaN 55.772 1 52.596 52.096 53.096 -3.1761 0 0 0 0.23508 1 10362 10362 7.609 0 1 38343 2013 25734 25750 37701 37701 0.07677173482056787 RLKNLSKVK 9 Unmodified _RLKNLSKVK_ 0 0 0 REV__nc|ENSG00000105357|Q7Z406|MYH14 REV__nc|ENSG00000105357|Q7Z406|MYH14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7807006835938 2 543.361308 1084.70806 NaN NaN NaN NaN NaN NaN NaN 163.45 1 158.66 158.16 159.16 -4.7898 0 0 0 0.19657 1 32584 32584 4.897 0 1 + 38344 14980 25735 25751 37702 37702 0.16909679284913182 RLKPLKVRRIK 11 Unmodified _RLKPLKVRRIK_ 0 0 0 ENSG00000171729|ENST00000376008|TMEM51 ENSG00000171729|ENST00000376008|TMEM51 ENSG00000171729|ENST00000376008|TMEM51 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 703.993408203125 2 703.993355 1405.97216 NaN NaN NaN NaN NaN NaN NaN 175.33 1 170.45 169.95 170.95 -4.8845 0 0 0 0.22632 1 34869 34869 0 0 1 38345 6163 25736 25752 37703 37703 0.285409341094919 RLKPLRERI 9 Unmodified _RLKPLRERI_ 0 0 0 REV__sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1 REV__sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 394.2587585449219 3 394.259413 1179.75641 NaN NaN NaN NaN NaN NaN NaN 131.02 1 131.02 130.52 131.52 0 0 0 0 0.19622 1 25904 25904 0.96228 0 1 + 38346 24709 25737 25753 37704 37704 0.17372172924842744 RLKQDKPTR 9 Unmodified _RLKQDKPTR_ 0 0 0 REV__nc|ENSG00000143379|Q15047-2|SETDB1 REV__nc|ENSG00000143379|Q15047-2|SETDB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21881103515625 3 381.231523 1140.67274 -0.67278 -0.00025648 0.74733 0.0002849 0.074546 2.8419E-05 381.5661606225612 55.763 0.41999 52.587 52.483 52.903 -3.1761 18 11 2 0 0 0 0.87797 1 10405 10405 6.6304 0 1 1105900 + 38347 16723 25738 25754 37705 37705 0.10803016757108708 RLKQDKPTR 9 Unmodified _RLKQDKPTR_ 0 0 0 REV__nc|ENSG00000143379|Q15047-2|SETDB1 REV__nc|ENSG00000143379|Q15047-2|SETDB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 381.231523 1140.67274 -0.079932 -3.0473E-05 -0.27233 -0.00010382 -0.35227 -0.0001343 381.2314217886993 52.595 0.32063 52.595 52.43 52.75 0 0.0040773 -0.0005317 NaN 9.544 16 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2033200 + 38348 16723 25738 25754 0.10803016757108708 RLKQEIERL 9 Unmodified _RLKQEIERL_ 0 0 0 ENSG00000175197|ENST00000346473|DDIT3;nc|ENSG00000285133|P35638-2|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.5235595703125 3 395.575178 1183.70371 -0.26549 -0.00010502 0.017587 6.9571E-06 -0.2479 -9.8063E-05 395.575158050093 43.902 0.54923 41.112 40.876 41.425 -2.79 36 15 3 0 0 0 0.10782 1 8220 8220 43.982 13.278 1 2464700 38349 6392 25739 25755 37706 37706 0.11920170071357461 RLKQEIERL 9 Unmodified _RLKQEIERL_ 0 0 0 ENSG00000175197|ENST00000346473|DDIT3;nc|ENSG00000285133|P35638-2|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 395.5340881347656 3 395.575178 1183.70371 -0.63599 -0.00025158 0.51366 0.00020319 -0.12233 -4.8391E-05 395.57528642078086 43.845 0.49084 41.097 40.87 41.361 -2.7475 36 13 3 0 0 0 0.38759 1 7896 7896 22.736 10.496 1 2043600 38350 6392 25739 25755 37707 37707 0.11920170071357461 RLKQEIERL 9 Unmodified _RLKQEIERL_ 0 0 0 ENSG00000175197|ENST00000346473|DDIT3;nc|ENSG00000285133|P35638-2|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 395.575178 1183.70371 0.1235 4.8853E-05 -0.43798 -0.00017325 -0.31448 -0.0001244 395.57495347154344 41.029 0.42125 41.029 40.743 41.164 0 -0.056963 -0.00025548 NaN 43.982 30 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3048400 38351 6392 25739 25755 0.11920170071357461 RLKQEIERL 9 Unmodified _RLKQEIERL_ 0 0 0 ENSG00000175197|ENST00000346473|DDIT3;nc|ENSG00000285133|P35638-2|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 395.575178 1183.70371 -0.049791 -1.9696E-05 -0.22645 -8.9578E-05 -0.27624 -0.00010927 395.57505562051716 43.883 0.55701 41.117 40.905 41.462 -2.7661 0.03126 -4.4583E-06 NaN 43.982 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1870200 38352 6392 25739 25755 0.11920170071357461 RLKQNLIRY 9 Unmodified _RLKQNLIRY_ 0 0 0 REV__ENST00000399921.5_1_21:30701913-30714744:+|nuORF REV__ENST00000399921.5_1_21:30701913-30714744:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2894287109375 2 602.369664 1202.72478 NaN NaN NaN NaN NaN NaN NaN 127.78 0.99999 127.78 127.28 128.28 0 0 0 0 0.19632 1 25228 25228 0.40827 0.36448 1 + 38353 21349 25740 25756 37708 37708 0.13152180170868633 RLKREEYRREY 11 Unmodified _RLKREEYRREY_ 0 0 0 ENST00000509702.5_1_4:23766811-23826805:-|nuORF;nc|ENSG00000109819|Q9UBK2-9|PPARGC1A;nc|ENSG00000109819|Q9UBK2-4|PPARGC1A;ENSG00000109819|ENST00000264867|PPARGC1A;nc|ENSG00000109819|Q9UBK2-3|PPARGC1A ENST00000509702.5_1_4:23766811-23826805:-|nuORF ENST00000509702.5_1_4:23766811-23826805:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.276611328125 3 533.290101 1596.84847 NaN NaN NaN NaN NaN NaN NaN 26.783 1 25.148 24.648 25.648 -1.6347 0 0 0 0.22632 1 4457 4457 0.094841 0.094277 1 38354 2545 25741 25757 37709 37709 0.07392186480524288 RLKREEYRREY 11 Unmodified _RLKREEYRREY_ 0 0 0 ENST00000509702.5_1_4:23766811-23826805:-|nuORF;nc|ENSG00000109819|Q9UBK2-9|PPARGC1A;nc|ENSG00000109819|Q9UBK2-4|PPARGC1A;ENSG00000109819|ENST00000264867|PPARGC1A;nc|ENSG00000109819|Q9UBK2-3|PPARGC1A ENST00000509702.5_1_4:23766811-23826805:-|nuORF ENST00000509702.5_1_4:23766811-23826805:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2691040039062 3 533.290101 1596.84847 0.46224 0.00024651 1.7537 0.00093522 2.2159 0.0011817 533.291508019508 118.96 0.38645 114.55 114.38 114.77 -4.4088 13 10 2 0 0 0 0.81043 1 22937 22937 2.2527 2.1579 1 1529500 38355 2545 25741 25757 37710 37710 0.07392186480524288 RLKRIKLIY 9 Unmodified _RLKRIKLIY_ 0 0 0 REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1 REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2814331054688 2 601.908425 1201.8023 NaN NaN NaN NaN NaN NaN NaN 94.796 1 90.915 90.415 91.415 -3.881 0 0 0 0.19624 1 18190 18190 0.073264 0 1 + 38356 25077 25742 25758 37711 37711 0.20946818107063336 RLKRKIRPTPK 11 Unmodified _RLKRKIRPTPK_ 0 0 0 nc|ENSG00000168314|Q13875-3|MOBP nc|ENSG00000168314|Q13875-3|MOBP nc|ENSG00000168314|Q13875-3|MOBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 348.71771240234375 4 348.987307 1391.92012 -0.098766 -3.4468E-05 2.3167 0.00080849 2.2179 0.00077402 349.2380695095932 112.23 1.0507 107.95 107.52 108.57 -4.2725 40 29 2 0 0 0 0.89122 1 21635 21635 0.50596 0.47975 1 1049500 38357 12450 25743 25759 37712 37712 0.23983770695713247 RLKVQTRKRLW 11 Unmodified _RLKVQTRKRLW_ 0 0 0 REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3 REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.388671875 2 742.470244 1482.92593 NaN NaN NaN NaN NaN NaN NaN 167.63 1 167.63 167.13 168.13 0 0 0 0 0.22632 1 34269 34269 0.094841 0.094841 1 + 38358 14576 25744 25760 37713 37713 0.203788692074113 RLKVTFEDA 9 Unmodified _RLKVTFEDA_ 0 0 0 ENST00000537399.1_1_19:19312736-19312988:-|nuORF;ENSG00000184162|ENST00000331552|NR2C2AP;ENST00000539693.1_1_19:19312736-19313791:-|nuORF;nc|ENSG00000184162|Q86WQ0-2|NR2C2AP ENST00000537399.1_1_19:19312736-19312988:-|nuORF ENST00000537399.1_1_19:19312736-19312988:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 76.104 1 72.689 72.189 73.189 -3.4151 0 0 0 0.21434 1 14853 14853 19.362 0 1 38359 6891 25745 25761 37714 37714 0.0461712798901317 RLKWLFIPQ 9 Unmodified _RLKWLFIPQ_ 0 0 0 REV__ENST00000488973.6_1_19:3572986-3573972:+|nuORF REV__ENST00000488973.6_1_19:3572986-3573972:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 600.8646850585938 2 600.866226 1199.7179 NaN NaN NaN NaN NaN NaN NaN 11.37 1 10.304 9.8039 10.804 -1.0664 0 0 0 0.23508 1 1285 1285 0.52476 0 1 + 38360 22281 25746 25762 37715 37715 0.1260286729032032 RLLALKKPA 9 Unmodified _RLLALKKPA_ 0 0 0 nc|ENSG00000117640|Q9H019-3|MTFR1L;ENSG00000117640|ENST00000374303|MTFR1L;nc|ENSG00000117640|Q9H019-2|MTFR1L nc|ENSG00000117640|Q9H019-3|MTFR1L nc|ENSG00000117640|Q9H019-3|MTFR1L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.1934814453125 3 337.234205 1008.68079 NaN NaN NaN NaN NaN NaN NaN 41.586 1 39.096 38.596 39.596 -2.4896 0 0 0 0.1963 1 7466 7466 0 0 1 38361 2996 25747 25763 37716 37716 0.17679195744551635 RLLDHWRK 8 Unmodified _RLLDHWRK_ 0 0 0 REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2225646972656 3 375.220958 1122.64105 NaN NaN NaN NaN NaN NaN NaN 105.95 1 101.58 101.08 102.08 -4.3764 0 0 0 0.21486 1 20316 20316 5.7319 1.5423 1 + 38362 15279 25748 25764 37717 37717 0.08463068793821549 RLLDLKFAC 9 Unmodified _RLLDLKFAC_ 0 0 0 REV__sp|Q7M6N6|SCP_HCMVASmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=SCPPE=1SV=1 REV__sp|Q7M6N6|SCP_HCMVASmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=SCPPE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2068176269531 3 360.207438 1077.60049 NaN NaN NaN NaN NaN NaN NaN 88.73 1 84.735 84.235 85.235 -3.9953 0 0 0 0.19657 1 16905 16905 4.897 4.7692 1 + 38363 24690 25749 25765 37718 37718 0.06478966359190963 RLLDLKFAC 9 Unmodified _RLLDLKFAC_ 0 0 0 REV__sp|Q7M6N6|SCP_HCMVASmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=SCPPE=1SV=1 REV__sp|Q7M6N6|SCP_HCMVASmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=SCPPE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201171875 3 360.207438 1077.60049 NaN NaN NaN NaN NaN NaN NaN 88.762 1 84.767 84.267 85.267 -3.9953 0 0 0 0.23375 1 16911 16911 13.615 1.9746 1 + 38364 24690 25749 25765 37719 37719 0.06478966359190963 RLLDLKFAC 9 Unmodified _RLLDLKFAC_ 0 0 0 REV__sp|Q7M6N6|SCP_HCMVASmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=SCPPE=1SV=1 REV__sp|Q7M6N6|SCP_HCMVASmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=SCPPE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20703125 3 360.207438 1077.60049 NaN NaN NaN NaN NaN NaN NaN 88.545 1 84.795 84.295 85.295 -3.7501 0 0 0 0.19657 1 16952 16952 4.897 4.4887 1 + 38365 24690 25749 25765 37720 37720 0.06478966359190963 RLLDLKFAC 9 Unmodified _RLLDLKFAC_ 0 0 0 REV__sp|Q7M6N6|SCP_HCMVASmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=SCPPE=1SV=1 REV__sp|Q7M6N6|SCP_HCMVASmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=SCPPE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20703125 3 360.207438 1077.60049 NaN NaN NaN NaN NaN NaN NaN 88.564 1 84.814 84.314 85.314 -3.7501 0 0 0 0.23508 1 16955 16955 9.544 0.79857 1 + 38366 24690 25749 25765 37721 37721 0.06478966359190963 RLLDPEVAPI 10 Unmodified _RLLDPEVAPI_ 0 0 0 REV__ENSG00000180425|ENST00000623205|C11orf71 REV__ENSG00000180425|ENST00000623205|C11orf71 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.22235107421875 3 374.888763 1121.64446 0.068818 2.5799E-05 -0.23486 -8.8045E-05 -0.16604 -6.2246E-05 374.88861943279613 104.98 1.2667 100.92 100.52 101.78 -4.0543 103 35 4 0 0 0 0.75099 1 20314 20314 5.4027 0 1 22710000 + 38367 18687 25750 25766 37722 37722 0.08850274057181196 RLLDQQEKL 9 Unmodified _RLLDQQEKL_ 0 0 0 nc|ENSG00000157637|Q9HBR0-3|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10;ENST00000539643.1_1_17:79219996-79220904:-|nuORF nc|ENSG00000157637|Q9HBR0-3|SLC38A10 nc|ENSG00000157637|Q9HBR0-3|SLC38A10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.20989990234375 3 381.555784 1141.64552 0.085702 3.27E-05 -0.32748 -0.00012495 -0.24178 -9.2254E-05 381.5557019900301 60.028 0.35455 56.714 56.552 56.907 -3.3139 11 9 2 0 0 0 0.6226 1 11171 11171 4.897 2.3985 1 597490 38368 5134 25751 25767 37723 37723 0.08036488426091637 RLLDQQEKL 9 Unmodified _RLLDQQEKL_ 0 0 0 nc|ENSG00000157637|Q9HBR0-3|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10;ENST00000539643.1_1_17:79219996-79220904:-|nuORF nc|ENSG00000157637|Q9HBR0-3|SLC38A10 nc|ENSG00000157637|Q9HBR0-3|SLC38A10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 381.555784 1141.64552 -0.53543 -0.0002043 0.50234 0.00019167 -0.033088 -1.2625E-05 381.55583261119017 59.89 0.35442 56.667 56.498 56.852 -3.2237 0.0026548 0.00053177 NaN 8.1555 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 541090 38369 5134 25751 25767 0.08036488426091637 RLLDRIHSI 9 Unmodified _RLLDRIHSI_ 0 0 0 ENSG00000177169|ENST00000321867|ULK1;ENST00000540647.5_1_12:132402872-132405903:+|nuORF ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2123107910156 3 374.896252 1121.66693 -0.69882 -0.00026198 0.42088 0.00015779 -0.27794 -0.0001042 374.8964752399357 84.556 0.52013 80.845 80.594 81.114 -3.7117 31 14 3 0 0 0 0.35556 1 16144 16144 12.241 4.0851 1 2031600 38370 6499 25752 25768 37724 37724 0.11095918245473513 RLLDRIHSI 9 Unmodified _RLLDRIHSI_ 0 0 0 ENSG00000177169|ENST00000321867|ULK1;ENST00000540647.5_1_12:132402872-132405903:+|nuORF ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.896252 1121.66693 -0.2649 -9.931E-05 0.19463 7.2966E-05 -0.070271 -2.6344E-05 374.8963496698951 84.478 0.5185 80.814 80.504 81.023 -3.6641 -0.00065784 0.00011272 NaN 12.241 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1741400 38371 6499 25752 25768 0.11095918245473513 RLLDRIHSI 9 Unmodified _RLLDRIHSI_ 0 0 0 ENSG00000177169|ENST00000321867|ULK1;ENST00000540647.5_1_12:132402872-132405903:+|nuORF ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 374.896252 1121.66693 0.18634 6.9857E-05 -0.33854 -0.00012692 -0.1522 -5.706E-05 374.89618249473597 84.694 0.48825 80.785 80.595 81.083 -3.9093 -0.029551 -0.00048693 NaN 12.241 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1388000 38372 6499 25752 25768 0.11095918245473513 RLLDSEIKI 9 Unmodified _RLLDSEIKI_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF;ENST00000531653.5_1_11:47445967-47447800:-|nuORF ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.55810546875 3 362.888763 1085.64446 -0.19493 -7.0737E-05 0.36716 0.00013324 0.17224 6.2502E-05 362.88884671599715 110.72 0.6672 110.72 110.4 111.07 0 39 18 3 0 0 0 0.35556 1 21822 21822 17.572 17.164 1 3255600 38373 5677 25753 25769 37725 37725 0.10506274057183873 RLLDSEIKI 9 Unmodified _RLLDSEIKI_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF;ENST00000531653.5_1_11:47445967-47447800:-|nuORF ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7847290039062 2 543.829506 1085.64446 0.3672 0.0001997 -0.15491 -8.4246E-05 0.21229 0.00011545 543.8293668498056 110.79 0.97939 110.79 110.29 111.27 0 75 27 4 0 0 0 0.10537 2 21850 21847;21850 31.728 19.488 1 20147000 38374 5677 25753 25769 37726;37727 37727 0.10506274057183873 RLLDSEIKI 9 Unmodified _RLLDSEIKI_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF;ENST00000531653.5_1_11:47445967-47447800:-|nuORF ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7816772460938 2 543.829506 1085.64446 0.19118 0.00010397 -0.10581 -5.754E-05 0.085374 4.6429E-05 543.8294248897427 114.79 1.0347 110.24 109.73 110.76 -4.555 75 28 4 0 0 0 0.02787 1 22009 22009 103.42 10.766 1 17018000 38375 5677 25753 25769 37728 37728 0.10506274057183873 RLLDSEIKI 9 Unmodified _RLLDSEIKI_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF;ENST00000531653.5_1_11:47445967-47447800:-|nuORF ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.829506 1085.64446 0.17421 9.474E-05 -0.081994 -4.4591E-05 0.092215 5.0149E-05 543.829410384341 114.62 0.81193 110.15 109.72 110.53 -4.4726 -0.087999 0.00015873 NaN 103.42 60 22 3 NaN NaN NaN NaN 0 NaN NaN 0 17287000 38376 5677 25753 25769 0.10506274057183873 RLLDSVRAI 9 Unmodified _RLLDSVRAI_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.271240234375 2 521.822015 1041.62948 -0.21035 -0.00010977 0.28868 0.00015064 0.078329 4.0874E-05 521.8220878465447 100.91 0.58934 96.746 96.461 97.05 -4.1594 27 16 2 0 0 0 0.15889 1 19861 19861 22.736 0.93682 1 2244600 38377 6631 25754 25770 37729 37729 0.11032826979840138 RLLDSVRAI 9 Unmodified _RLLDSVRAI_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2813720703125 2 521.822015 1041.62948 0.41129 0.00021462 -0.23375 -0.00012197 0.17754 9.2645E-05 521.8218025319298 100.84 0.58633 96.852 96.55 97.136 -3.9895 35 16 3 0 0 0 0.45059 1 19360 19360 22.658 9.6156 1 2620700 38378 6631 25754 25770 37730 37730 0.11032826979840138 RLLDSVRAI 9 Unmodified _RLLDSVRAI_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.822015 1041.62948 -0.42335 -0.00022091 0.60618 0.00031632 0.18283 9.5405E-05 521.8222722281461 101.11 0.57258 96.815 96.505 97.077 -4.297 0.010631 0.00041276 NaN 22.736 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2270800 38379 6631 25754 25770 0.11032826979840138 RLLDVRSVL 9 Unmodified _RLLDVRSVL_ 0 0 0 nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7;ENST00000492535.1_1_22:32889009-32894514:+|nuORF nc|ENSG00000100225|Q9Y3I1-3|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5606689453125 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 133.14 1 128.29 127.79 128.79 -4.8527 0 0 0 0.23508 1 25576 25576 10.899 2.9536 1 38380 1939 25755 25771 37731 37731 0.1287340001395023 RLLDVRSVL 9 Unmodified _RLLDVRSVL_ 0 0 0 nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7;ENST00000492535.1_1_22:32889009-32894514:+|nuORF nc|ENSG00000100225|Q9Y3I1-3|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5644226074219 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 133.1 1 128.3 127.8 128.8 -4.799 0 0 0 0.2165 1 25618 25618 18.721 6.5465 1 38381 1939 25755 25771 37732 37732 0.1287340001395023 RLLEATSYL 9 Unmodified _RLLEATSYL_ 0 0 0 nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A nc|ENSG00000004487|O60341|KDM1A nc|ENSG00000004487|O60341|KDM1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2694091796875 2 533.300581 1064.58661 0.10068 5.3691E-05 0.067236 3.5857E-05 0.16791 8.9548E-05 533.30059725243 122.01 0.89285 122.01 121.58 122.47 0 74 25 4 0 0 0 0.11828 1 24061 24061 49.554 1.8056 1 33118000 38382 974 25756 25772 37733 37733 0.05690012131753974 RLLEATSYL 9 Unmodified _RLLEATSYL_ 0 0 0 nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A nc|ENSG00000004487|O60341|KDM1A nc|ENSG00000004487|O60341|KDM1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2704467773438 2 533.300581 1064.58661 0.18458 9.8438E-05 -0.06064 -3.234E-05 0.12394 6.6098E-05 533.3004940716966 126.33 1.0192 121.71 121.17 122.19 -4.6172 86 28 4 0 0 0 0.50308 1 24957 24957 38.176 11.292 1 39698000 38383 974 25756 25772 37734 37734 0.05690012131753974 RLLEGVKQA 9 Unmodified _RLLEGVKQA_ 0 0 0 ENSG00000116221|ENST00000360840|MRPL37 ENSG00000116221|ENST00000360840|MRPL37 ENSG00000116221|ENST00000360840|MRPL37 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.84832763671875 3 338.541586 1012.60293 -0.35075 -0.00011874 0.38451 0.00013017 0.033751 1.1426E-05 338.54165461477663 36.092 0.56536 36.092 35.821 36.387 0 22 15 2 0 0 0 0.15889 1 6609 6609 22.736 10.496 1 2079100 38384 2918 25757 25773 37735 37735 0.0971313808852301 RLLEGVKQA 9 Unmodified _RLLEGVKQA_ 0 0 0 ENSG00000116221|ENST00000360840|MRPL37 ENSG00000116221|ENST00000360840|MRPL37 ENSG00000116221|ENST00000360840|MRPL37 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 338.541586 1012.60293 -0.60167 -0.00020369 0.62667 0.00021215 0.024995 8.462E-06 338.5417615546571 38.572 0.5625 36.023 35.768 36.33 -2.5491 -0.042811 0.00030432 NaN 22.736 29 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2663400 38385 2918 25757 25773 0.0971313808852301 RLLEGVKQA 9 Unmodified _RLLEGVKQA_ 0 0 0 ENSG00000116221|ENST00000360840|MRPL37 ENSG00000116221|ENST00000360840|MRPL37 ENSG00000116221|ENST00000360840|MRPL37 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 338.541586 1012.60293 0.05435 1.84E-05 -0.20241 -6.8525E-05 -0.14806 -5.0125E-05 338.54149386450723 38.499 0.66859 36.057 35.775 36.444 -2.4419 -0.0088172 -0.00053771 NaN 22.736 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2362500 38386 2918 25757 25773 0.0971313808852301 RLLEGVKQA 9 Unmodified _RLLEGVKQA_ 0 0 0 ENSG00000116221|ENST00000360840|MRPL37 ENSG00000116221|ENST00000360840|MRPL37 ENSG00000116221|ENST00000360840|MRPL37 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 338.541586 1012.60293 -0.50502 -0.00017097 0.56293 0.00019058 0.057917 1.9607E-05 338.54168824585975 38.496 0.59317 36.091 35.775 36.369 -2.4049 0.025459 0.00023959 NaN 22.736 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1742600 38387 2918 25757 25773 0.0971313808852301 RLLEKSQRV 9 Unmodified _RLLEKSQRV_ 0 0 0 ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 376.4668273925781 3 376.899773 1127.67749 -0.19037 -7.175E-05 -0.3338 -0.00012581 -0.52417 -0.00019756 376.89969324140026 19.457 0.34715 19.457 19.276 19.623 0 21 9 3 0 0 0 0.38759 1 3161 3161 22.736 10.496 1 1952200 38388 7037 25758 25774 37736 37736 0.11875900899894987 RLLEKSQRV 9 Unmodified _RLLEKSQRV_ 0 0 0 ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 376.899773 1127.67749 0.18021 6.7923E-05 -0.80798 -0.00030453 -0.62776 -0.0002366 376.8994260528905 21.122 0.56493 19.648 19.276 19.841 -1.4742 0.075683 -0.00031475 NaN 22.736 25 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2010900 38389 7037 25758 25774 0.11875900899894987 RLLEKSQRV 9 Unmodified _RLLEKSQRV_ 0 0 0 ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 376.899773 1127.67749 -0.20992 -7.9121E-05 -0.44928 -0.00016933 -0.6592 -0.00024845 376.89963826112546 20.996 0.31092 19.612 19.41 19.721 -1.3847 0.039694 9.0832E-05 NaN 22.736 21 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1513800 38390 7037 25758 25774 0.11875900899894987 RLLEMNRVFDT 11 Unmodified _RLLEMNRVFDT_ 0 0 0 REV__MYNN|p.L606Yfs*19|1|0.36|ENSG00000085274|chr3:169786656-169786656|T/-|frameshift_variant REV__MYNN|p.L606Yfs*19|1|0.36|ENSG00000085274|chr3:169786656-169786656|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2466735839844 3 465.246733 1392.71837 NaN NaN NaN NaN NaN NaN NaN 92.223 1 88.129 87.629 88.629 -4.0946 0 0 0 0.22632 1 17568 17568 5.4027 1.5264 1 + 38391 23900 25759 25775 37737 37737 0.0377187415717799 RLLESVVVL 9 Unmodified _RLLESVVVL_ 0 0 0 ENSG00000157600|ENST00000372068|TMEM164 ENSG00000157600|ENST00000372068|TMEM164 ENSG00000157600|ENST00000372068|TMEM164 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 514.2793579101562 2 514.329142 1026.64373 0.21029 0.00010816 0.024288 1.2492E-05 0.23458 0.00012065 514.328965480356 154.03 0.45909 154.03 153.79 154.25 0 18 12 2 0 0 0 0.54058 1 30873 30873 12.241 9.6094 1 1730600 38392 5130 25760 25776 37738 37738 0.13147479408144136 RLLEYTPTA 9 Unmodified _RLLEYTPTA_ 0 0 0 ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B ENSG00000082701|ENST00000264235|GSK3B ENSG00000082701|ENST00000264235|GSK3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2748413085938 2 532.292756 1062.57096 0.73259 0.00038995 -1.9871 -0.0010577 -1.2545 -0.00066775 532.2920836572855 88.233 0.59584 84.238 83.903 84.499 -3.9953 26 16 3 0 0 0 0.45972 1 16816 16816 8.1555 7.7473 1 1516500 38393 1642 25761 25777 37739 37739 0.04217725614716983 RLLGEQIIL 9 Unmodified _RLLGEQIIL_ 0 0 0 ENST00000489422.1_1_20:18118955-18122998:+|nuORF;ENST00000484001.1_1_20:18119001-18122998:+|nuORF;ENST00000492286.1_1_20:18119088-18122998:+|nuORF;ENSG00000232838|ENST00000432901|PET117 ENST00000489422.1_1_20:18118955-18122998:+|nuORF ENST00000489422.1_1_20:18118955-18122998:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 527.2896118164062 2 527.834591 1053.65463 0.080667 4.2579E-05 0.09021 4.7616E-05 0.17088 9.0195E-05 527.8345818946486 155.42 0.75302 150.64 150.23 150.98 -4.7791 49 20 3 0 0 0 0.38759 1 30935 30935 31.728 22.815 1 6233700 38394 7816 25762 25778 37740 37740 0.12994881782424272 RLLGEQIIL 9 Unmodified _RLLGEQIIL_ 0 0 0 ENST00000489422.1_1_20:18118955-18122998:+|nuORF;ENST00000484001.1_1_20:18119001-18122998:+|nuORF;ENST00000492286.1_1_20:18119088-18122998:+|nuORF;ENSG00000232838|ENST00000432901|PET117 ENST00000489422.1_1_20:18118955-18122998:+|nuORF ENST00000489422.1_1_20:18118955-18122998:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 527.834591 1053.65463 0.071301 3.7635E-05 -0.082271 -4.3425E-05 -0.01097 -5.7901E-06 527.8345585354995 156.12 0.63361 150.84 150.47 151.1 -5.2854 0.096536 -2.1958E-05 NaN 31.728 47 17 4 NaN NaN NaN NaN 0 NaN NaN 0 4314200 38395 7816 25762 25778 0.12994881782424272 RLLGEQIIL 9 Unmodified _RLLGEQIIL_ 0 0 0 ENST00000489422.1_1_20:18118955-18122998:+|nuORF;ENST00000484001.1_1_20:18119001-18122998:+|nuORF;ENST00000492286.1_1_20:18119088-18122998:+|nuORF;ENSG00000232838|ENST00000432901|PET117 ENST00000489422.1_1_20:18118955-18122998:+|nuORF ENST00000489422.1_1_20:18118955-18122998:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 527.834591 1053.65463 0.45708 0.00024126 -0.18972 -0.00010014 0.26736 0.00014112 527.8344048804224 155.99 0.70706 150.74 150.4 151.1 -5.2526 -0.00079406 -0.00013539 NaN 31.728 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4843600 38396 7816 25762 25778 0.12994881782424272 RLLGKEKIY 9 Unmodified _RLLGKEKIY_ 0 0 0 REV__tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1 REV__tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 374.90399169921875 3 373.901003 1118.68118 0.19075 7.1322E-05 -0.57027 -0.00021322 -0.37952 -0.0001419 373.90075126499545 47.395 0.84136 47.395 47.052 47.894 0 65 23 4 0 0 0 0.67174 1 8908 8908 8.1555 0 1 11290000 + 38397 25216 25763 25779 37741 37741 0.1265857067376146 RLLGKEKIY 9 Unmodified _RLLGKEKIY_ 0 0 0 REV__tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1 REV__tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 373.901003 1118.68118 0.19075 7.1322E-05 -0.57027 -0.00021322 -0.37952 -0.0001419 373.90075126499545 47.395 0.84136 47.395 47.052 47.894 0 0.024473 -0.00042425 NaN 8.1555 65 23 4 NaN NaN NaN NaN 0 NaN NaN 0 11290000 + 38398 25216 25763 25779 0.1265857067376146 RLLGKEKIY 9 Unmodified _RLLGKEKIY_ 0 0 0 REV__tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1 REV__tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 373.901003 1118.68118 -0.36989 -0.0001383 -0.062153 -2.3239E-05 -0.43204 -0.00016154 373.9009373356269 50.21 1.6557 47.329 46.66 48.315 -2.8811 -0.04178 0.00014571 NaN 8.1555 92 46 4 NaN NaN NaN NaN 0 NaN NaN 0 13782000 + 38399 25216 25763 25779 0.1265857067376146 RLLGKEKIY 9 Unmodified _RLLGKEKIY_ 0 0 0 REV__tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1 REV__tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 373.901003 1118.68118 0.041143 1.5383E-05 -0.49766 -0.00018608 -0.45652 -0.00017069 373.90075247261643 50.418 1.7235 47.373 47.024 48.748 -3.0453 0.0021098 -0.00034281 NaN 8.1555 93 49 4 NaN NaN NaN NaN 0 NaN NaN 0 12813000 + 38400 25216 25763 25779 0.1265857067376146 RLLGKEKIY 9 Unmodified _RLLGKEKIY_ 0 0 0 REV__tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1 REV__tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 373.901003 1118.68118 -0.7545 -0.00028211 0.31037 0.00011605 -0.44413 -0.00016606 373.9010391158496 50.393 2.0398 47.386 47.009 49.049 -3.0068 0.015197 0.00056357 NaN 8.1555 108 58 4 NaN NaN NaN NaN 0 NaN NaN 0 12579000 + 38401 25216 25763 25779 0.1265857067376146 RLLGKLVLLLP 11 Unmodified _RLLGKLVLLLP_ 0 0 0 ENST00000396271.7_1_10:27529291-27529648:-|nuORF ENST00000396271.7_1_10:27529291-27529648:-|nuORF ENST00000396271.7_1_10:27529291-27529648:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 412.097412109375 3 412.291831 1233.85366 NaN NaN NaN NaN NaN NaN NaN 172.47 1 167.57 167.07 168.07 -4.8977 0 0 0 0.23698 1 34208 34208 0.45452 0.45452 1 38402 9441 25764 25780 37742 37742 0.2460914208113536 RLLGLETNV 9 Unmodified _RLLGLETNV_ 0 0 0 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.2833557128906 2 507.800749 1013.58694 0.20575 0.00010448 -0.24208 -0.00012293 -0.03633 -1.8448E-05 507.8005873151981 111.37 0.79922 111.37 110.96 111.76 0 46 22 3 0 0 0 0.15889 1 21930 21930 26.995 26.12 1 3757300 38403 2811 25765 25781 37743 37743 0.08069431851606623 RLLILILKL 9 Unmodified _RLLILILKL_ 0 0 0 ENST00000569650.1_1_7:72469123-72470067:-|nuORF;ENST00000359898.5_7:74299379-74304447:-|nuORF;nc|ENSG00000205583|P0CL83|STAG3L1 ENST00000569650.1_1_7:72469123-72470067:-|nuORF ENST00000569650.1_1_7:72469123-72470067:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7906494140625 2 547.90482 1093.79509 NaN NaN NaN NaN NaN NaN NaN 152.52 1 152.52 152.02 153.02 0 0 0 0 0.23508 1 30549 30549 0.52476 0 1 38404 9007 25766 25782 37744 37744 0.2519408550665503 RLLKLLHL 8 Unmodified _RLLKLLHL_ 0 0 0 ENSG00000181609|ENST00000322641|OR52D1 ENSG00000181609|ENST00000322641|OR52D1 ENSG00000181609|ENST00000322641|OR52D1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 503.2680358886719 2 503.350212 1004.68587 NaN NaN NaN NaN NaN NaN NaN 154.9 1 149.65 149.15 150.15 -5.2526 0 0 0 0.2396 1 30036 30036 0 0 1 38405 6732 25767 25783 37745 37745 0.1837149960718989 RLLKSKLYL 9 Unmodified _RLLKSKLYL_ 0 0 0 ENST00000539708.5_1_12:16513351-16516972:+|nuORF;ENSG00000008394|ENST00000396210|MGST1 ENST00000539708.5_1_12:16513351-16516972:+|nuORF ENST00000539708.5_1_12:16513351-16516972:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.1917724609375 3 378.585015 1132.73321 -0.27395 -0.00010371 0.36929 0.00013981 0.095342 3.6095E-05 378.58509904998044 71.3 0.62999 71.3 71.039 71.669 0 49 17 4 0 0 0 0.074448 1 13797 13797 105.38 82.764 1 24738000 38406 1044 25768 25784 37746 37746 0.17215734087494639 RLLKSKLYL 9 Unmodified _RLLKSKLYL_ 0 0 0 ENST00000539708.5_1_12:16513351-16516972:+|nuORF;ENSG00000008394|ENST00000396210|MGST1 ENST00000539708.5_1_12:16513351-16516972:+|nuORF ENST00000539708.5_1_12:16513351-16516972:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 379.2217712402344 3 378.585015 1132.73321 0.16269 6.1593E-05 -0.24638 -9.3276E-05 -0.083686 -3.1682E-05 378.58488044964304 74.834 0.79292 71.158 70.763 71.556 -3.6764 69 22 4 0 0 0 0.069179 1 14088 14088 36.127 13.391 1 10009000 38407 1044 25768 25784 37747 37747 0.17215734087494639 RLLKSKLYL 9 Unmodified _RLLKSKLYL_ 0 0 0 ENST00000539708.5_1_12:16513351-16516972:+|nuORF;ENSG00000008394|ENST00000396210|MGST1 ENST00000539708.5_1_12:16513351-16516972:+|nuORF ENST00000539708.5_1_12:16513351-16516972:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 378.585015 1132.73321 -0.30565 -0.00011571 0.21647 8.1953E-05 -0.08918 -3.3762E-05 378.58503733496696 74.479 0.91557 71.115 70.71 71.625 -3.3643 -0.061985 5.442E-05 NaN 36.127 70 25 4 NaN NaN NaN NaN 0 NaN NaN 0 11643000 38408 1044 25768 25784 0.17215734087494639 RLLKSKLYL 9 Unmodified _RLLKSKLYL_ 0 0 0 ENST00000539708.5_1_12:16513351-16516972:+|nuORF;ENSG00000008394|ENST00000396210|MGST1 ENST00000539708.5_1_12:16513351-16516972:+|nuORF ENST00000539708.5_1_12:16513351-16516972:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 378.585015 1132.73321 -0.36293 -0.0001374 0.36266 0.0001373 -0.00027282 -1.0329E-07 378.58506756544136 74.729 0.86616 71.134 70.781 71.647 -3.594 -0.042235 0.00022045 NaN 36.127 72 24 4 NaN NaN NaN NaN 0 NaN NaN 0 12629000 38409 1044 25768 25784 0.17215734087494639 RLLLLLGY 8 Unmodified _RLLLLLGY_ 0 0 0 ENST00000462924.5_1_10:99206088-99212597:+|nuORF;nc|ENSG00000171307|Q969W1-4|ZDHHC16;nc|ENSG00000171307|Q969W1-3|ZDHHC16;nc|ENSG00000171307|Q969W1-2|ZDHHC16;ENSG00000171307|ENST00000393760|ZDHHC16 ENST00000462924.5_1_10:99206088-99212597:+|nuORF ENST00000462924.5_1_10:99206088-99212597:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25152587890625 2 480.81567 959.616788 -0.08818 -4.2398E-05 0.94719 0.00045543 0.85901 0.00041303 480.8160315994043 54.655 0.31206 54.655 54.49 54.802 0 12 8 2 0 0 0 1.0268 1 10421 10421 0 0 1 676800 38410 6136 25769 25785 37748 37748 0.13536415587611828 RLLLPLLLKLL 11 Unmodified _RLLLPLLLKLL_ 0 0 0 REV__MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant REV__MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 652.7520141601562 2 652.973234 1303.93191 NaN NaN NaN NaN NaN NaN NaN 173.73 1 173.73 173.23 174.23 0 0 0 0 0.23698 1 35939 35939 0 0 1 + 38411 18908 25770 25786 37749 37749 0.2921057466635375 RLLMLDHSY 9 Unmodified _RLLMLDHSY_ 0 0 0 REV__ENST00000593859.5_1_19:51323389-51327022:-|nuORF REV__ENST00000593859.5_1_19:51323389-51327022:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.2012023925781 3 383.202465 1146.58556 NaN NaN NaN NaN NaN NaN NaN 71.351 1 67.884 67.384 68.384 -3.467 0 0 0 0.23508 1 13522 13522 5.2969 0 1 + 38412 17964 25771 25787 37750 37750 0.018134744912231326 RLLPKVQEV 9 Unmodified _RLLPKVQEV_ 0 0 0 ENSG00000186193|ENST00000409687|SAPCD2 ENSG00000186193|ENST00000409687|SAPCD2 ENSG00000186193|ENST00000409687|SAPCD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.25830078125 2 541.340041 1080.66553 0.23565 0.00012757 -0.74013 -0.00040066 -0.50448 -0.00027309 541.3396934504249 72.124 0.90617 72.124 71.633 72.539 0 57 25 3 0 0 0 0.27332 1 13933 13933 51.63 13.656 1 5270300 38413 7043 25772 25788 37751 37751 0.1284228415670441 RLLPKVQEV 9 Unmodified _RLLPKVQEV_ 0 0 0 ENSG00000186193|ENST00000409687|SAPCD2 ENSG00000186193|ENST00000409687|SAPCD2 ENSG00000186193|ENST00000409687|SAPCD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2615966796875 2 541.340041 1080.66553 0.18095 9.7955E-05 -0.37088 -0.00020077 -0.18994 -0.00010282 541.3398213653551 75.698 0.8689 71.975 71.545 72.414 -3.7227 56 24 3 0 0 0 0.27332 1 14329 14329 29.841 5.82 1 4670900 38414 7043 25772 25788 37752 37752 0.1284228415670441 RLLPKVQEV 9 Unmodified _RLLPKVQEV_ 0 0 0 ENSG00000186193|ENST00000409687|SAPCD2 ENSG00000186193|ENST00000409687|SAPCD2 ENSG00000186193|ENST00000409687|SAPCD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2835693359375 2 541.340041 1080.66553 0.3242 0.0001755 -1.024 -0.00055435 -0.69983 -0.00037884 541.3394914833141 75.71 0.90639 72.076 71.57 72.477 -3.6337 45 25 2 0 0 0 0.14998 1 14388 14388 60.074 22.1 1 4992700 38415 7043 25772 25788 37753 37753 0.1284228415670441 RLLPLPKLA 9 Unmodified _RLLPLPKLA_ 0 0 0 REV__nc|ENSG00000184792|Q969R2-2|OSBP2 REV__nc|ENSG00000184792|Q969R2-2|OSBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.9013366699219 3 340.902455 1019.68554 NaN NaN NaN NaN NaN NaN NaN 9.5209 1 8.4863 7.9863 8.9863 -1.0347 0 0 0 0.23508 1 977 977 0 0 1 + 38416 18915 25773 25789 37754 37754 0.17648079887294443 RLLPLRLA 8 Unmodified _RLLPLRLA_ 0 0 0 ENST00000552360.3_1_19:47778274-47778535:+|nuORF REV__ENST00000241041.7_1_11:45931313-45931427:-|nuORF REV__ENST00000241041.7_1_11:45931313-45931427:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.8848571777344 3 317.886917 950.63892 NaN NaN NaN NaN NaN NaN NaN 9.1541 1 8.3599 7.8599 8.8599 -0.79424 0 0 0 0.21486 1 1032 1032 0 0 1 38417 11193 25774 25790 37755 37755 0.16162640056018063 RLLPLRLA 8 Unmodified _RLLPLRLA_ 0 0 0 ENST00000552360.3_1_19:47778274-47778535:+|nuORF REV__ENST00000241041.7_1_11:45931313-45931427:-|nuORF REV__ENST00000241041.7_1_11:45931313-45931427:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.8919982910156 3 317.886917 950.63892 NaN NaN NaN NaN NaN NaN NaN 9.636 1 8.8417 8.3417 9.3417 -0.79424 0 0 0 0.21486 1 1130 1130 0 0 1 38418 11193 25774 25790 37756 37756 0.16162640056018063 RLLPVSPCCV 10 Unmodified _RLLPVSPCCV_ 0 0 0 REV__ENST00000481822.1_1_1:155223346-155224854:-|nuORF REV__ENST00000481822.1_1_1:155223346-155224854:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7830200195312 2 543.793555 1085.57256 NaN NaN NaN NaN NaN NaN NaN 164.05 1 159 158.5 159.5 -5.0446 0 0 0 0.22588 1 31959 31959 10.074 1.3285 1 + 38419 17433 25775 25791 37757 37757 0.033193201074482204 RLLQESFWKNY 11 Unmodified _RLLQESFWKNY_ 0 0 0 SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant;SPATA31A6|p.N1191Tfs*16|1|0.12|ENSG00000185775|chr9:42189269-42189269|A/-|frameshift_variant;ENSG00000185775|ENST00000332857|SPATA31A6 SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3880004882812 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 85.305 1 85.305 84.805 85.805 0 0 0 0 0.22632 1 16650 16650 0.50596 0 1 38420 7010 25776 25792 37758 37758 0.039878069259884796 RLLQESFWKNY 11 Unmodified _RLLQESFWKNY_ 0 0 0 SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant;SPATA31A6|p.N1191Tfs*16|1|0.12|ENSG00000185775|chr9:42189269-42189269|A/-|frameshift_variant;ENSG00000185775|ENST00000332857|SPATA31A6 SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3894653320312 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 142.18 1 142.18 141.68 142.68 0 0 0 0 0.22632 1 28347 28347 0.50596 0.47975 1 38421 7010 25776 25792 37759 37759 0.039878069259884796 RLLQESFWKNY 11 Unmodified _RLLQESFWKNY_ 0 0 0 SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant;SPATA31A6|p.N1191Tfs*16|1|0.12|ENSG00000185775|chr9:42189269-42189269|A/-|frameshift_variant;ENSG00000185775|ENST00000332857|SPATA31A6 SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3880004882812 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 156.4 1 151.61 151.11 152.11 -4.7885 0 0 0 0.22632 1 31101 31101 0.50596 0.50596 1 38422 7010 25776 25792 37760 37760 0.039878069259884796 RLLSKIHNV 9 Unmodified _RLLSKIHNV_ 0 0 0 MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6 MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20819091796875 3 360.560981 1078.66111 -0.5556 -0.00020033 0.71812 0.00025893 0.16252 5.8598E-05 360.8955670056294 39.199 0.43016 36.65 36.466 36.896 -2.5491 17 11 2 0 0 0 0.54058 1 7282 7282 12.241 7.3436 1 459300 38423 2905 25777 25793 37761 37761 0.12492819733802207 RLLSKIHNV 9 Unmodified _RLLSKIHNV_ 0 0 0 MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6 MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2087097167969 3 360.560981 1078.66111 0.033958 1.2244E-05 -0.16227 -5.8509E-05 -0.12831 -4.6265E-05 360.56084002422506 39.164 0.44951 36.723 36.479 36.929 -2.4419 18 12 2 0 0 0 0.6226 1 7017 7017 4.897 2.3985 1 757040 38424 2905 25777 25793 37762 37762 0.12492819733802207 RLLSKIHNV 9 Unmodified _RLLSKIHNV_ 0 0 0 MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6 MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 360.560981 1078.66111 -0.52937 -0.00019087 0.30897 0.0001114 -0.2204 -7.9467E-05 360.5611377512365 39.045 0.38192 36.64 36.441 36.823 -2.4049 -0.030587 -5.0723E-05 NaN 12.241 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 583700 38425 2905 25777 25793 0.12492819733802207 RLLVVPRIKR 10 Unmodified _RLLVVPRIKR_ 0 0 0 REV__ENST00000380752.9_1_13:30087987-30088110:-|nuORF REV__ENST00000380752.9_1_13:30087987-30088110:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 417.28900146484375 3 417.290825 1248.85064 NaN NaN NaN NaN NaN NaN NaN 141.4 1 136.75 136.25 137.25 -4.6493 0 0 0 0.22588 1 27930 27930 0.13989 0 1 + 38426 21158 25778 25794 37763 37763 0.23617311746966152 RLLVVPRIKR 10 Unmodified _RLLVVPRIKR_ 0 0 0 REV__ENST00000380752.9_1_13:30087987-30088110:-|nuORF REV__ENST00000380752.9_1_13:30087987-30088110:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 417.2890930175781 3 417.290825 1248.85064 NaN NaN NaN NaN NaN NaN NaN 87.104 1 83.375 82.875 83.875 -3.7289 0 0 0 0.22588 1 16663 16663 0.13989 0 1 + 38427 21158 25778 25794 37764 37764 0.23617311746966152 RLLWKMWFRFF 11 Unmodified _RLLWKMWFRFF_ 0 0 0 REV__ENSG00000179387|ENST00000323570|ELMOD2 REV__ENSG00000179387|ENST00000323570|ELMOD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7831420898438 3 543.967353 1628.88023 -0.19409 -0.00010558 4.3032 0.0023408 4.1091 0.0022352 544.3034121595529 107.07 0.13867 102.75 102.68 102.82 -4.32 5 3 2 0 0 0 0.82662 1 21096 21096 0.094841 0.094841 1 519230 + 38428 18653 25779 25795 37765 37765 0.0909450770075182 RLLWKMWFRFF 11 Unmodified _RLLWKMWFRFF_ 0 0 0 REV__ENSG00000179387|ENST00000323570|ELMOD2 REV__ENSG00000179387|ENST00000323570|ELMOD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7859497070312 3 543.967353 1628.88023 NaN NaN NaN NaN NaN NaN NaN 17.589 1 16.074 15.574 16.574 -1.5148 0 0 0 0.22632 1 2562 2562 0.094841 0 1 + 38429 18653 25779 25795 37766 37766 0.0909450770075182 RLLYKVVEI 9 Unmodified _RLLYKVVEI_ 0 0 0 REV__ENSG00000139645|ENST00000267116|ANKRD52 REV__ENSG00000139645|ENST00000267116|ANKRD52 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 378.24053955078125 3 378.241137 1131.70158 NaN NaN NaN NaN NaN NaN NaN 120.26 1 115.79 115.29 116.29 -4.467 0 0 0 0.23508 1 23154 23154 1.0715 0.29493 1 + 38430 16532 25780 25796 37767 37767 0.14099741333575366 RLLYWAKSS 9 Unmodified _RLLYWAKSS_ 0 0 0 REV__nc|ENSG00000135476|Q14674-2|ESPL1 REV__nc|ENSG00000135476|Q14674-2|ESPL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.212646484375 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 89.191 1 85.441 84.941 85.941 -3.7501 0 0 0 0.19657 1 17079 17079 4.897 1.6157 1 + 38431 16272 25781 25797 37768 37768 0.06217424605551969 RLMEAMSEV 9 Unmodified _RLMEAMSEV_ 0 0 0 VPS33B|p.A606T|1|0.12|ENSG00000184056|chr15:90999013-90999013|C/T|missense_variant;nc|ENSG00000184056|Q9H267-2|VPS33B;ENSG00000184056|ENST00000333371|VPS33B VPS33B|p.A606T|1|0.12|ENSG00000184056|chr15:90999013-90999013|C/T|missense_variant VPS33B|p.A606T|1|0.12|ENSG00000184056|chr15:90999013-90999013|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.275146484375 2 533.257002 1064.49945 0.63226 0.00033716 0.082056 4.3757E-05 0.71432 0.00038092 533.2570060548082 92.833 0.5607 88.689 88.384 88.944 -4.1435 26 15 2 0 0 0 0.11828 1 17678 17678 49.554 18.918 1 2413100 38432 6888 25782 25798 37769 37769 -0.030218534058349178 RLMEAMSEV 9 Unmodified _RLMEAMSEV_ 0 0 0 VPS33B|p.A606T|1|0.12|ENSG00000184056|chr15:90999013-90999013|C/T|missense_variant;nc|ENSG00000184056|Q9H267-2|VPS33B;ENSG00000184056|ENST00000333371|VPS33B VPS33B|p.A606T|1|0.12|ENSG00000184056|chr15:90999013-90999013|C/T|missense_variant VPS33B|p.A606T|1|0.12|ENSG00000184056|chr15:90999013-90999013|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2821655273438 2 533.257002 1064.49945 0.14498 7.7311E-05 -0.62781 -0.00033479 -0.48283 -0.00025747 533.2568928210133 92.51 0.57647 88.702 88.476 89.053 -3.8083 30 16 3 0 0 0 0.11828 2 17758 17758;17764 49.554 18.918 1 3702000 38433 6888 25782 25798 37770;37771 37770 -0.030218534058349178 RLMEAMSEV 9 Unmodified _RLMEAMSEV_ 0 0 0 VPS33B|p.A606T|1|0.12|ENSG00000184056|chr15:90999013-90999013|C/T|missense_variant;nc|ENSG00000184056|Q9H267-2|VPS33B;ENSG00000184056|ENST00000333371|VPS33B VPS33B|p.A606T|1|0.12|ENSG00000184056|chr15:90999013-90999013|C/T|missense_variant VPS33B|p.A606T|1|0.12|ENSG00000184056|chr15:90999013-90999013|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 533.257002 1064.49945 0.059971 3.198E-05 0.093332 4.977E-05 0.1533 8.175E-05 533.2570946762582 92.665 0.55328 88.739 88.446 88.999 -3.9251 0.02927 0.00019146 NaN 49.554 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3436400 38434 6888 25782 25798 -0.030218534058349178 RLMEENWNA 9 Oxidation (M) _RLM(Oxidation (M))EENWNA_ RLM(1)EENWNA RLM(44)EENWNA 0 0 1 nc|ENSG00000188372|P21754-2|ZP3;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3 nc|ENSG00000188372|P21754-2|ZP3 nc|ENSG00000188372|P21754-2|ZP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2688598632812 2 589.76658 1177.51861 0.38443 0.00022672 -0.085593 -5.048E-05 0.29883 0.00017624 589.7664722370916 52.897 0.50218 52.897 52.573 53.075 0 19 13 2 0 0 0 0.15274 1 10058 10058 43.772 17.504 1 3462300 38435 7168 25783 25799 37772 37772 98 -0.06305180790559461 RLMEENWNA 9 Oxidation (M) _RLM(Oxidation (M))EENWNA_ RLM(1)EENWNA RLM(52)EENWNA 0 0 1 nc|ENSG00000188372|P21754-2|ZP3;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3 nc|ENSG00000188372|P21754-2|ZP3 nc|ENSG00000188372|P21754-2|ZP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.267333984375 2 589.76658 1177.51861 0.26102 0.00015394 -0.45117 -0.00026608 -0.19015 -0.00011214 589.7663901652713 55.788 0.51463 52.904 52.696 53.211 -2.8837 17 14 2 0 0 0 0.11219 1 10669 10669 51.63 9.6743 1 3804900 38436 7168 25783 25799 37773 37773 98 -0.06305180790559461 RLMKINHDL 9 Unmodified _RLMKINHDL_ 0 0 0 nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF nc|ENSG00000188026|Q5EBL4-2|RILPL1 nc|ENSG00000188026|Q5EBL4-2|RILPL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21893310546875 3 380.549976 1138.6281 0.15735 5.9878E-05 -0.1268 -4.8253E-05 0.030548 1.1625E-05 380.54991794751805 44.787 0.56137 44.787 44.495 45.057 0 40 15 4 0 0 0 0.4999 1 8407 8407 19.626 11.681 1 2352600 38437 7144 25784 25800 37774 37774 0.06432869619447956 RLMKINHDL 9 Unmodified _RLMKINHDL_ 0 0 0 nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF nc|ENSG00000188026|Q5EBL4-2|RILPL1 nc|ENSG00000188026|Q5EBL4-2|RILPL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2187194824219 3 380.549976 1138.6281 0.0055906 2.1275E-06 -0.064493 -2.4543E-05 -0.058902 -2.2415E-05 380.5499253229332 47.738 0.52939 44.796 44.511 45.04 -2.9421 35 14 3 0 0 0 0.20546 1 8689 8689 37.075 25.58 1 4235300 38438 7144 25784 25800 37775 37775 0.06432869619447956 RLMKINHDL 9 Unmodified _RLMKINHDL_ 0 0 0 nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF nc|ENSG00000188026|Q5EBL4-2|RILPL1 nc|ENSG00000188026|Q5EBL4-2|RILPL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2190856933594 3 380.549976 1138.6281 -0.76506 -0.00029114 0.7353 0.00027982 -0.029759 -1.1325E-05 380.55024850096436 47.682 0.61722 44.732 44.469 45.086 -2.9499 40 17 3 0 0 0 0.25495 2 8699 8697;8699 34.222 20.004 1 3301100 38439 7144 25784 25800 37776;37777 37777 0.06432869619447956 RLMKINHDL 9 Unmodified _RLMKINHDL_ 0 0 0 nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF nc|ENSG00000188026|Q5EBL4-2|RILPL1 nc|ENSG00000188026|Q5EBL4-2|RILPL1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.549976 1138.6281 -0.28716 -0.00010928 0.27241 0.00010367 -0.014748 -5.6125E-06 380.5500675984044 47.561 0.52023 44.692 44.426 44.946 -2.869 -0.059547 7.7362E-05 NaN 37.075 37 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4599500 38440 7144 25784 25800 0.06432869619447956 RLMPKVVRV 9 Unmodified _RLMPKVVRV_ 0 0 0 nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1 nc|ENSG00000188026|Q5EBL4-2|RILPL1 nc|ENSG00000188026|Q5EBL4-2|RILPL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 366.2010192871094 3 366.570711 1096.6903 -0.53014 -0.00019433 -0.26971 -9.8868E-05 -0.79985 -0.0002932 366.57054218026707 60.503 0.56603 57.28 56.96 57.526 -3.2237 26 15 2 0 0 0 0.54058 1 11342 11342 12.241 12.241 1 1080000 38441 7144 25785 25801 37778 37778 0.14582640758430898 RLMPKVVRV 9 Unmodified _RLMPKVVRV_ 0 0 0 nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1 nc|ENSG00000188026|Q5EBL4-2|RILPL1 nc|ENSG00000188026|Q5EBL4-2|RILPL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 366.570711 1096.6903 -0.44871 -0.00016448 0.12365 4.5328E-05 -0.32505 -0.00011916 366.90505437094725 57.502 0.48087 57.502 57.237 57.718 0 0.14057 0.00045867 NaN 12.241 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1009900 38442 7144 25785 25801 0.14582640758430898 RLMPKVVRV 9 Unmodified _RLMPKVVRV_ 0 0 0 nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1 nc|ENSG00000188026|Q5EBL4-2|RILPL1 nc|ENSG00000188026|Q5EBL4-2|RILPL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 366.570711 1096.6903 -0.26014 -9.5359E-05 -0.32769 -0.00012012 -0.58783 -0.00021548 366.5706140840578 60.26 0.44362 57.327 57.1 57.543 -2.9333 -0.03438 -3.7677E-05 NaN 12.241 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1920300 38443 7144 25785 25801 0.14582640758430898 RLMPKVVRV 9 Unmodified _RLMPKVVRV_ 0 0 0 nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1 nc|ENSG00000188026|Q5EBL4-2|RILPL1 nc|ENSG00000188026|Q5EBL4-2|RILPL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 366.570711 1096.6903 0.092837 3.4031E-05 -0.65815 -0.00024126 -0.56531 -0.00020723 366.5704362002616 60.65 0.51813 57.336 57.015 57.533 -3.3139 -0.024839 -0.00040109 NaN 12.241 25 14 3 NaN NaN NaN NaN 0 NaN NaN 0 989900 38444 7144 25785 25801 0.14582640758430898 RLMRRHKRRRR 11 Unmodified _RLMRRHKRRRR_ 0 0 0 ENST00000478247.1_1_3:183882805-183888540:+|nuORF;DVL3|p.M666Cfs*2|1|0.47|ENSG00000161202|chr3:184170593-184170593|C/-|frameshift_variant;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3 ENST00000478247.1_1_3:183882805-183888540:+|nuORF ENST00000478247.1_1_3:183882805-183888540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2826538085938 3 541.006198 1619.99677 NaN NaN NaN NaN NaN NaN NaN 94.49 1 90.499 89.999 90.999 -3.9907 0 0 0 0.23698 1 18516 18516 0.08335 0.08335 1 38445 898 25786 25802 37779 37779 0.21156683763911133 RLNEKNYEL 9 Unmodified _RLNEKNYEL_ 0 0 0 ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF ENSG00000047249|ENST00000359530|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2715454101562 2 589.811845 1177.60914 0.7023 0.00041423 -0.4613 -0.00027208 0.24101 0.00014215 589.8115482136649 47.465 0.59754 47.465 47.226 47.823 0 37 16 3 0 0 0 0.037522 1 8937 8937 76.825 36.586 1 5952100 38446 1213 25787 25803 37780 37780 0.027436115293767216 RLNEKNYEL 9 Unmodified _RLNEKNYEL_ 0 0 0 ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF ENSG00000047249|ENST00000359530|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2911071777344 3 393.543655 1177.60914 0.29065 0.00011438 -0.71951 -0.00028316 -0.42886 -0.00016878 393.54340101031835 47.466 0.66576 47.466 47.193 47.858 0 35 18 2 0 0 0 0.65155 1 8924 8924 20.415 5.1661 1 12666000 38447 1213 25787 25803 37781 37781 0.027436115293767216 RLNEKNYEL 9 Unmodified _RLNEKNYEL_ 0 0 0 ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF ENSG00000047249|ENST00000359530|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2667236328125 2 589.811845 1177.60914 -0.059896 -3.5327E-05 0.28611 0.00016875 0.22622 0.00013343 589.8119606437077 50.353 0.61144 47.346 47.042 47.654 -3.0068 48 17 4 0 0 0 0.030811 1 9247 9247 80.676 40.726 1 5715800 38448 1213 25787 25803 37782 37782 0.027436115293767216 RLNEKNYEL 9 Unmodified _RLNEKNYEL_ 0 0 0 ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF ENSG00000047249|ENST00000359530|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 393.543655 1177.60914 -0.3386 -0.00013325 -0.048114 -1.8935E-05 -0.38672 -0.00015219 393.54365291651715 50.281 0.77811 47.4 47.079 47.857 -2.8811 -0.033239 0.00041621 NaN 20.415 39 21 2 NaN NaN NaN NaN 0 NaN NaN 0 13374000 38449 1213 25787 25803 0.027436115293767216 RLNEKNYEL 9 Unmodified _RLNEKNYEL_ 0 0 0 ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF ENSG00000047249|ENST00000359530|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.811845 1177.60914 0.44792 0.00026419 -0.20774 -0.00012253 0.24018 0.00014166 589.8115808352044 50.41 0.67853 47.365 47.057 47.735 -3.0453 -0.028624 -6.3771E-05 NaN 80.676 48 19 4 NaN NaN NaN NaN 0 NaN NaN 0 6178300 38450 1213 25787 25803 0.027436115293767216 RLNILVNFY 9 Unmodified _RLNILVNFY_ 0 0 0 REV__ENSG00000160282|ENST00000397746|FTCD REV__ENSG00000160282|ENST00000397746|FTCD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3301391601562 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 116.86 1 112.37 111.87 112.87 -4.486 0 0 0 0.19632 1 23038 23038 0.40827 0 1 + 38451 17411 25788 25804 37783 37783 0.08057997639662062 RLNITYPML 9 Unmodified _RLNITYPML_ 0 0 0 ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENST00000489406.1_1_22:19455337-19466647:-|nuORF ENSG00000070010|ENST00000263202|UFD1 ENSG00000070010|ENST00000263202|UFD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2114562988281 3 374.21096 1119.61105 -0.27249 -0.00010197 -1.1959 -0.00044753 -1.4684 -0.0005495 374.2121827511515 59.551 0.84058 56.617 56.156 56.996 -2.9333 62 23 5 0 0 0 0.46882 1 11430 11430 21.537 8.6644 1 3906400 38452 1423 25789 25805 37784 37784 0.056029490136324966 RLNKKVVLL 9 Unmodified _RLNKKVVLL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.53582763671875 3 361.585126 1081.73355 -0.30027 -0.00010857 0.3775 0.0001365 0.077222 2.7922E-05 361.5852133455421 54.498 0.77445 54.498 54.172 54.947 0 57 21 3 0 0 0 0.058839 1 10343 10343 43.858 31.618 1 3892000 38453 4537 25790 25806 37785 37785 0.19595153807381394 RLNKVIKSV 9 Unmodified _RLNKVIKSV_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1;ENST00000545894.1_1_11:61069637-61069871:-|nuORF;ENST00000451943.6_1_11:61067610-61070297:-|nuORF;ENST00000538470.2_1_11:61067610-61070684:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.87896728515625 3 352.901114 1055.68151 -0.2244 -7.9189E-05 0.38687 0.00013653 0.16248 5.7338E-05 352.9011763638509 26.438 0.54898 26.438 26.224 26.773 0 40 15 4 0 0 0 0.47592 1 4591 4591 17.113 4.8722 1 8340200 38454 5864 25791 25807 37786 37786 0.1558999039361879 RLNKVIKSV 9 Unmodified _RLNKVIKSV_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1;ENST00000545894.1_1_11:61069637-61069871:-|nuORF;ENST00000451943.6_1_11:61067610-61070297:-|nuORF;ENST00000538470.2_1_11:61067610-61070684:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 353.86151123046875 3 352.901114 1055.68151 0.5145 0.00018157 -0.49566 -0.00017492 0.018833 6.6463E-06 352.90087220599173 28.366 0.51568 26.41 26.192 26.707 -1.9561 44 14 4 0 0 0 0.35556 1 5050 5050 22.109 8.5739 1 8072600 38455 5864 25791 25807 37787 37787 0.1558999039361879 RLNKVIKSV 9 Unmodified _RLNKVIKSV_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1;ENST00000545894.1_1_11:61069637-61069871:-|nuORF;ENST00000451943.6_1_11:61067610-61070297:-|nuORF;ENST00000538470.2_1_11:61067610-61070684:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 352.901114 1055.68151 0.26534 9.3638E-05 -0.24296 -8.574E-05 0.022379 7.8977E-06 352.9009780334189 28.199 0.70068 26.444 26.175 26.876 -1.7552 0.0225 -0.00026162 NaN 22.109 53 19 4 NaN NaN NaN NaN 0 NaN NaN 0 9902300 38456 5864 25791 25807 0.1558999039361879 RLNKVIKSV 9 Unmodified _RLNKVIKSV_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1;ENST00000545894.1_1_11:61069637-61069871:-|nuORF;ENST00000451943.6_1_11:61067610-61070297:-|nuORF;ENST00000538470.2_1_11:61067610-61070684:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 352.901114 1055.68151 -0.36875 -0.00013013 0.38423 0.0001356 0.015487 5.4653E-06 352.90123020695296 28.391 0.66249 26.394 26.134 26.797 -1.9962 -0.02724 0.00040239 NaN 22.109 50 18 4 NaN NaN NaN NaN 0 NaN NaN 0 7439900 38457 5864 25791 25807 0.1558999039361879 RLPDPFAKV 9 Unmodified _RLPDPFAKV_ 0 0 0 ENSG00000108854|ENST00000262435|SMURF2 ENSG00000108854|ENST00000262435|SMURF2 ENSG00000108854|ENST00000262435|SMURF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2822875976562 2 521.805834 1041.59712 -0.19765 -0.00010314 0.26363 0.00013756 0.065975 3.4426E-05 521.8059194667043 115.65 1.6191 111.18 110.33 111.95 -4.4726 124 46 4 0 0 0 0.17734 3 22715 22674;22715;22723 40.239 23.126 1 11021000 38458 2500 25792 25808 37788;37789;37790 37789 0.0779803957684635 RLPDPFAKV 9 Unmodified _RLPDPFAKV_ 0 0 0 ENSG00000108854|ENST00000262435|SMURF2 ENSG00000108854|ENST00000262435|SMURF2 ENSG00000108854|ENST00000262435|SMURF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.281005859375 2 521.805834 1041.59712 0.56487 0.00029475 -0.54885 -0.00028639 0.01602 8.3595E-06 521.80550876104 115.34 1.5794 111.03 110.31 111.89 -4.3136 112 44 3 0 0 0 0.12517 2 22172 22159;22172 47.732 27.278 1 11002000 38459 2500 25792 25808 37791;37792 37792 0.0779803957684635 RLPEMGSNVEL 11 Unmodified _RLPEMGSNVEL_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7792358398438 2 622.818812 1243.62307 NaN NaN NaN NaN NaN NaN NaN 119.36 1 114.72 114.22 115.22 -4.645 0 0 0 0.087741 1 22907 22907 37.771 15.035 1 38460 26528;7260;26529 25793 25809 37793 37793 0.011005209661789195 RLPEMGSNVEL 11 Unmodified _RLPEMGSNVEL_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7677612304688 2 622.818812 1243.62307 NaN NaN NaN NaN NaN NaN NaN 119.48 1 114.84 114.34 115.34 -4.645 0 0 0 0.045147 1 22933 22933 44.392 15.897 1 38461 26528;7260;26529 25793 25809 37794 37794 0.011005209661789195 RLPEMGSNVEL 11 Unmodified _RLPEMGSNVEL_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7784423828125 2 622.818812 1243.62307 0.59847 0.00037274 -0.18102 -0.00011274 0.41745 0.00025999 622.8186392338048 119.26 0.27679 114.79 114.68 114.96 -4.467 11 7 2 0 0 0 0.44454 1 22946 22946 25.997 8.8845 1 1170200 38462 26528;7260;26529 25793 25809 37795 37795 0.011005209661789195 RLPEMGSNVEL 11 Unmodified _RLPEMGSNVEL_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant TRRAP-ASNS|1|fusion MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 622.818812 1243.62307 1.2652 0.00078797 -0.2021 -0.00012587 1.0631 0.00066209 622.818527282587 119.36 0.39198 114.84 114.62 115.01 -4.5221 0.022642 -2.0253E-05 NaN 25.997 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1737500 38463 26528;7260;26529 25793 25809 0.011005209661789195 RLPFDDKA 8 Unmodified _RLPFDDKA_ 0 0 0 REV__ENSG00000068024|ENST00000543185|HDAC4 REV__ENSG00000068024|ENST00000543185|HDAC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77569580078125 2 481.258717 960.50288 0.2184 0.00010511 -1.4368 -0.00069149 -1.2184 -0.00058638 481.2581108300787 161.59 0.13989 156.45 156.34 156.48 -5.1438 5 3 2 0 0 0 0.73426 1 31387 31387 9.3474 0.75416 1 1560900 + 38464 14219 25794 25810 37796 37796 0.021049007546935172 RLPHVVAI 8 Unmodified _RLPHVVAI_ 0 0 0 REV__ENSG00000169508|ENST00000376414|GPR183 REV__ENSG00000169508|ENST00000376414|GPR183 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 302.1123352050781 3 302.19575 903.565421 NaN NaN NaN NaN NaN NaN NaN 154.07 1 149.3 148.8 149.8 -4.7684 0 0 0 0.21486 1 30620 30620 1.8442 0 1 + 38465 18107 25795 25811 37797 37797 0.10978091613560537 RLPHVVAI 8 Unmodified _RLPHVVAI_ 0 0 0 REV__ENSG00000169508|ENST00000376414|GPR183 REV__ENSG00000169508|ENST00000376414|GPR183 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.1270446777344 3 302.19575 903.565421 NaN NaN NaN NaN NaN NaN NaN 155.02 1 149.77 149.27 150.27 -5.2526 0 0 0 0.21486 1 30062 30062 1.8442 0 1 + 38466 18107 25795 25811 37798 37798 0.10978091613560537 RLPLGRRYRS 10 Unmodified _RLPLGRRYRS_ 0 0 0 ENSG00000265491|ENST00000582693|RNF115 ENSG00000265491|ENST00000582693|RNF115 ENSG00000265491|ENST00000582693|RNF115 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2383117675781 3 425.258184 1272.75272 NaN NaN NaN NaN NaN NaN NaN 12.672 1 11.552 11.052 12.052 -1.1206 0 0 0 0.22588 1 1529 1529 0.62683 0.12087 1 38467 7976 25796 25812 37799 37799 0.12725503150977602 RLPLKYAEH 9 Unmodified _RLPLKYAEH_ 0 0 0 ENST00000302874.8_1_4:25347234-25351177:+|nuORF ENST00000302874.8_1_4:25347234-25351177:+|nuORF ENST00000302874.8_1_4:25347234-25351177:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 563.8853149414062 2 563.822015 1125.62948 NaN NaN NaN NaN NaN NaN NaN 163.63 1 158.56 158.06 159.06 -5.0648 0 0 0 0.23508 1 31849 31849 7.2892 0 1 38468 8580 25797 25813 37800 37800 0.0716882697984147 RLPLVHLL 8 Unmodified _RLPLVHLL_ 0 0 0 ENST00000557373.1_1_14:35343971-35344544:+|nuORF ENST00000557373.1_1_14:35343971-35344544:+|nuORF ENST00000557373.1_1_14:35343971-35344544:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2406311035156 2 480.821287 959.628021 NaN NaN NaN NaN NaN NaN NaN 135.71 1 135.71 135.21 136.21 0 0 0 0 0.23711 1 26883 26883 0.62683 0 1 38469 11252 25798 25814 37801 37801 0.14659237681757986 RLPNAGTQV 9 Unmodified _RLPNAGTQV_ 0 0 0 nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6 nc|ENSG00000091409|P23229-5|ITGA6 nc|ENSG00000091409|P23229-5|ITGA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74261474609375 2 478.269616 954.524678 0.041314 1.9759E-05 0.20214 9.6678E-05 0.24346 0.00011644 478.26947254891206 38.985 0.66578 38.985 38.638 39.304 0 28 18 2 0 0 0 0.25183 1 7217 7217 34.402 12.655 1 957260 38470 12249 25799 25815 37802 37802 0.04559705503288569 RLPNAGTQV 9 Unmodified _RLPNAGTQV_ 0 0 0 nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6 nc|ENSG00000091409|P23229-5|ITGA6 nc|ENSG00000091409|P23229-5|ITGA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7377014160156 2 478.269616 954.524678 -0.17064 -8.1614E-05 0.57566 0.00027532 0.40502 0.00019371 478.2697684553099 41.6 0.71913 38.965 38.677 39.396 -2.6348 31 20 2 0 0 0 0.25183 1 7802 7802 34.402 10.381 1 1785900 38471 12249 25799 25815 37803 37803 0.04559705503288569 RLPNAGTQV 9 Unmodified _RLPNAGTQV_ 0 0 0 nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6 nc|ENSG00000091409|P23229-5|ITGA6 nc|ENSG00000091409|P23229-5|ITGA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7383117675781 2 478.269616 954.524678 0.050813 2.4302E-05 0.21148 0.00010114 0.26229 0.00012545 478.26960292077626 41.49 0.66159 39.001 38.743 39.405 -2.4896 32 18 3 0 0 0 0.13932 1 7453 7453 45.7 12.914 1 1218900 38472 12249 25799 25815 37804 37804 0.04559705503288569 RLPNAGTQV 9 Unmodified _RLPNAGTQV_ 0 0 0 nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6 nc|ENSG00000091409|P23229-5|ITGA6 nc|ENSG00000091409|P23229-5|ITGA6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.269616 954.524678 -0.06098 -2.9165E-05 0.17119 8.1877E-05 0.11021 5.2712E-05 478.2696151181876 41.603 0.63583 38.952 38.653 39.288 -2.651 -0.023758 -0.00012132 NaN 45.7 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1595400 38473 12249 25799 25815 0.04559705503288569 RLPNRHIG 8 Unmodified _RLPNRHIG_ 0 0 0 FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77862548828125 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 156.14 1 156.14 155.64 156.64 0 0 0 0 0.21486 1 31317 31317 12.532 0 1 38474 3531 25800 25816 37805 37805 0.07466537696927844 RLPPDLGPD 9 Unmodified _RLPPDLGPD_ 0 0 0 REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2632751464844 2 490.263999 978.513445 -0.13005 -6.3758E-05 0.0030815 1.5107E-06 -0.12697 -6.2248E-05 490.26381972535773 64.046 0.41918 64.046 63.852 64.271 0 25 11 3 0 0 0 0.58804 1 12359 12359 13.906 3.0821 1 5356300 + 38475 20195 25801 25817 37806 37806 0.02332883409144415 RLPPDLGPD 9 Unmodified _RLPPDLGPD_ 0 0 0 REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2640380859375 2 490.263999 978.513445 0.079089 3.8774E-05 -0.22238 -0.00010902 -0.14329 -7.025E-05 490.26381936217626 67.216 0.56035 64.107 63.826 64.387 -3.1086 22 15 2 0 0 0 0.5059 1 13050 13050 19.257 3.1079 1 2054600 + 38476 20195 25801 25817 37807 37807 0.02332883409144415 RLPPDLGPD 9 Unmodified _RLPPDLGPD_ 0 0 0 REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2643737792969 2 490.263999 978.513445 0.39375 0.00019304 -0.41836 -0.00020511 -0.024611 -1.2066E-05 490.2638271320499 67.507 0.41609 64.01 63.822 64.238 -3.4965 21 11 2 0 0 0 0.5059 1 12701 12701 19.257 3.4098 1 2438700 + 38477 20195 25801 25817 37808 37808 0.02332883409144415 RLPPDLGPD 9 Unmodified _RLPPDLGPD_ 0 0 0 REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2637939453125 2 490.263999 978.513445 0.081648 4.0029E-05 -0.13587 -6.661E-05 -0.054218 -2.6581E-05 490.26389789986007 67.31 0.62753 63.983 63.791 64.419 -3.3268 34 17 3 0 0 0 0.5059 1 12721 12721 19.257 3.4098 1 2246700 + 38478 20195 25801 25817 37809 37809 0.02332883409144415 RLPPEGILHNV 11 Unmodified _RLPPEGILHNV_ 0 0 0 VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant;nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.751953125 2 622.859129 1243.70371 NaN NaN NaN NaN NaN NaN NaN 105.34 1 101.25 100.75 101.75 -4.0913 0 0 0 0.22592 1 20262 20262 11.518 5.786 1 38479 1231 25802 25818 37810 37810 0.09160170071368157 RLPPLRKINWI 11 Unmodified _RLPPLRKINWI_ 0 0 0 DEF6|p.S597Rfs*39|1|0.19|ENSG00000023892|chr6:35321298-35321298|C/-|frameshift_variant DEF6|p.S597Rfs*39|1|0.19|ENSG00000023892|chr6:35321298-35321298|C/-|frameshift_variant DEF6|p.S597Rfs*39|1|0.19|ENSG00000023892|chr6:35321298-35321298|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 703.3405151367188 2 703.443163 1404.87177 NaN NaN NaN NaN NaN NaN NaN 173.19 1 168.3 167.8 168.8 -4.8977 0 0 0 0.22632 1 34382 34382 1.4074 0.70977 1 38480 811 25803 25819 37811 37811 0.18553277055843864 RLPQWLWHWF 10 Unmodified _RLPQWLWHWF_ 0 0 0 ENST00000530149.1_1_11:211118-211532:+|nuORF ENST00000530149.1_1_11:211118-211532:+|nuORF ENST00000530149.1_1_11:211118-211532:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.259033203125 3 490.259413 1467.75641 NaN NaN NaN NaN NaN NaN NaN 26.063 1 24.141 23.641 24.641 -1.9222 0 0 0 2.8426 1 4305 4305 0.69767 0.19171 1 38481 10953 25804 25820 37812 37812 0.04124172924798586 RLPVKKST 8 Unmodified _RLPVKKST_ 0 0 0 REV__ENST00000539921.5_1_11:62619473-62619665:-|nuORF REV__ENST00000539921.5_1_11:62619473-62619665:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650390625 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 10.203 1 9.1363 8.6363 9.6363 -1.0664 0 0 0 0.2396 1 1091 1091 0.12286 0 1 + 38482 22852 25805 25821 37813 37813 0.11986056922410171 RLPWPRSL 8 Unmodified _RLPWPRSL_ 0 0 0 ENST00000531092.5_1_6:2397615-2397801:+|nuORF ENST00000531092.5_1_6:2397615-2397801:+|nuORF ENST00000531092.5_1_6:2397615-2397801:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 512.7704467773438 2 512.806168 1023.59778 0.032222 1.6524E-05 -2.4089 -0.0012353 -2.3766 -0.0012188 513.3062378387903 159.39 0.10561 154.59 154.52 154.62 -4.7952 4 2 2 0 0 0 0.73426 1 31675 31675 9.3474 0 1 428690 38483 10964 25806 25822 37814 37814 0.08692879016552979 RLQDELVTL 9 Unmodified _RLQDELVTL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;ENST00000484393.1_1_1:39751227-39753267:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7763671875 2 543.811313 1085.60807 0.2382 0.00012953 0.048463 2.6355E-05 0.28666 0.00015589 543.8112893218746 129.62 0.77094 124.99 124.6 125.37 -4.6292 47 21 3 0 0 0 0.35556 1 25482 25482 12.241 0 1 8964500 38484 3487 25807 25823 37815 37815 0.06869397160471635 RLQDELVTL 9 Unmodified _RLQDELVTL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;ENST00000484393.1_1_1:39751227-39753267:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7872314453125 2 543.811313 1085.60807 0.067757 3.6847E-05 0.089593 4.8722E-05 0.15735 8.5569E-05 543.811333853168 129.93 0.76999 125.09 124.66 125.43 -4.8355 63 21 4 0 0 0 0.25976 1 24995 24995 19.626 13.758 1 8168200 38485 3487 25807 25823 37816 37816 0.06869397160471635 RLQDELVTL 9 Unmodified _RLQDELVTL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.P924Hfs*52|1|0.23|ENSG00000127603|chr1:39303040-39303040|C/-|frameshift_variant;MACF1|p.S2157Ffs*3|1|0.37|ENSG00000127603|chr1:39333036-39333037|-/T|frameshift_variant;ENST00000484393.1_1_1:39751227-39753267:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.778076171875 2 543.811313 1085.60807 0.25489 0.00013861 -0.0098281 -5.3446E-06 0.24506 0.00013327 543.8112684268742 129.87 0.78322 125.1 124.71 125.5 -4.7725 52 21 3 0 0 0 0.10537 2 25043 25037;25043 43.772 19.979 1 8025900 38486 3487 25807 25823 37817;37818 37818 0.06869397160471635 RLQEDPPAGV 10 Unmodified _RLQEDPPAGV_ 0 0 0 nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A nc|ENSG00000077721|P49459-2|UBE2A nc|ENSG00000077721|P49459-2|UBE2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2738037109375 2 541.285463 1080.55637 0.59477 0.00032194 -0.52693 -0.00028522 0.067836 3.6719E-05 541.2850556011426 48.651 0.84693 48.651 48.244 49.09 0 57 23 4 0 0 0 0.072734 3 9214 9127;9211;9214 74.2 33.96 1 10338000 38487 1562 25808 25824 37819;37820;37821 37821 0.01931653466544958 RLQEDPPAGV 10 Unmodified _RLQEDPPAGV_ 0 0 0 nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A nc|ENSG00000077721|P49459-2|UBE2A nc|ENSG00000077721|P49459-2|UBE2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2744140625 2 541.285463 1080.55637 0.040602 2.1978E-05 -0.16102 -8.7159E-05 -0.12042 -6.5182E-05 541.2853077294245 51.678 0.75279 48.795 48.384 49.136 -2.8824 66 21 4 0 0 0 0.00016105 2 9822 9769;9822 125.53 45.933 1 13997000 38488 1562 25808 25824 37822;37823 37823 0.01931653466544958 RLQEDPPAGV 10 Unmodified _RLQEDPPAGV_ 0 0 0 nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A nc|ENSG00000077721|P49459-2|UBE2A nc|ENSG00000077721|P49459-2|UBE2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2703857421875 2 541.285463 1080.55637 0.10764 5.8266E-05 -0.12529 -6.782E-05 -0.017651 -9.554E-06 541.2853406079311 51.892 0.74062 48.847 48.47 49.21 -3.0453 63 20 4 0 0 0 0.85881 1 9464 9464 18.373 8.2992 1 12897000 38489 1562 25808 25824 37824 37824 0.01931653466544958 RLQEDPPAGV 10 Unmodified _RLQEDPPAGV_ 0 0 0 nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A nc|ENSG00000077721|P49459-2|UBE2A nc|ENSG00000077721|P49459-2|UBE2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2811279296875 2 541.285463 1080.55637 0.026523 1.4357E-05 -0.01099 -5.949E-06 0.015533 8.4076E-06 541.2853988410299 51.855 0.90144 48.803 48.306 49.207 -3.0517 66 25 4 0 0 0 0.61548 1 9483 9483 18.373 5.3306 1 11500000 38490 1562 25808 25824 37825 37825 0.01931653466544958 RLQERNVQV 9 Unmodified _RLQERNVQV_ 0 0 0 ENSG00000146733|ENST00000275605|PSPH;ENST00000450062.1_1_7:55832495-55840978:+|nuORF ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2195129394531 3 381.219395 1140.63635 -0.0082992 -3.1638E-06 -0.00064095 -2.4434E-07 -0.0089401 -3.4082E-06 381.21946305430714 32.042 0.46066 29.812 29.621 30.082 -2.2305 23 12 3 0 0 0 0.45972 1 5825 5825 8.1555 1.5252 1 812110 38491 4669 25809 25825 37826 37826 0.0716613986039647 RLQERNVQV 9 Unmodified _RLQERNVQV_ 0 0 0 ENSG00000146733|ENST00000275605|PSPH;ENST00000450062.1_1_7:55832495-55840978:+|nuORF ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2195739746094 3 381.219395 1140.63635 0.27388 0.00010441 -0.25569 -9.7475E-05 0.01819 6.9345E-06 381.2192615177341 31.899 0.38463 29.873 29.73 30.114 -2.0264 17 10 2 0 0 0 0.52856 2 5513 5511;5513 17.863 12.08 1 665780 38492 4669 25809 25825 37827;37828 37828 0.0716613986039647 RLQERNVQV 9 Unmodified _RLQERNVQV_ 0 0 0 ENSG00000146733|ENST00000275605|PSPH;ENST00000450062.1_1_7:55832495-55840978:+|nuORF ENSG00000146733|ENST00000275605|PSPH ENSG00000146733|ENST00000275605|PSPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2131652832031 3 381.219395 1140.63635 -0.20488 -7.8105E-05 0.30535 0.0001164 0.10047 3.83E-05 381.21952229661053 32.032 0.51712 29.883 29.654 30.171 -2.1483 21 14 2 0 0 0 0.45972 2 5534 5519;5534 10.315 6.1257 1 787690 38493 4669 25809 25825 37829;37830 37830 0.0716613986039647 RLQESVMEA 9 Unmodified _RLQESVMEA_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2673950195312 2 531.766049 1061.51754 0.14656 7.7934E-05 -0.33536 -0.00017834 -0.18881 -0.0001004 531.7659333140082 52.564 1.1762 52.564 51.825 53.001 0 98 32 4 0 0 0 0.25183 3 10025 9929;9979;10025 34.402 7.8781 1 27649000 38494 5565 25810 25826 37831;37832;37833 37833 -0.010753951594551836 RLQESVMEA 9 Unmodified _RLQESVMEA_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27001953125 2 531.766049 1061.51754 -0.1445 -7.684E-05 -0.041283 -2.1953E-05 -0.18578 -9.8792E-05 531.7661392617683 55.491 0.96878 52.607 52.04 53.009 -2.8837 81 27 4 0 0 0 0.15274 2 10602 10579;10602 43.772 16.144 1 43657000 38495 5565 25810 25826 37834;37835 37835 -0.010753951594551836 RLQESVMEA 9 Unmodified _RLQESVMEA_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2636108398438 2 531.766049 1061.51754 0.39045 0.00020763 -0.56195 -0.00029883 -0.1715 -9.1196E-05 531.7658985911612 55.808 0.97763 52.618 52.113 53.09 -3.1895 85 27 4 0 0 0 0.19171 4 10290 10254;10290;10301;10352 38.176 9.094 1 40427000 38496 5565 25810 25826 37836;37837;37838;37839 37837 -0.010753951594551836 RLQESVMEA 9 Unmodified _RLQESVMEA_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 531.766049 1061.51754 0.050257 2.6725E-05 -0.15125 -8.0429E-05 -0.10099 -5.3704E-05 531.7660669522129 55.774 1.1144 52.598 52.004 53.119 -3.1761 0.0010528 0.00011813 NaN 43.772 86 31 4 NaN NaN NaN NaN 0 NaN NaN 0 31849000 38497 5565 25810 25826 -0.010753951594551836 RLQKKVEQL 9 Unmodified _RLQKKVEQL_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;nc|ENSG00000172216|P17676-3|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2117919921875 3 381.239907 1140.69789 0.39326 0.00014993 -0.30581 -0.00011659 0.087444 3.3337E-05 381.2397444846764 22.314 0.44389 20.84 20.626 21.07 -1.4742 27 12 3 0 0 0 0.38759 1 3814 3814 24.882 12.641 1 1620900 38498 6200 25811 25827 37840 37840 0.13317071559686156 RLQKKVEQL 9 Unmodified _RLQKKVEQL_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;nc|ENSG00000172216|P17676-3|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2119445800781 3 381.239907 1140.69789 -0.1327 -5.0591E-05 0.018362 7.0004E-06 -0.11434 -4.359E-05 381.2398886144975 22.187 0.41608 20.733 20.562 20.978 -1.4535 25 11 3 0 0 0 0.48307 1 3543 3543 33.445 15.072 1 1580300 38499 6200 25811 25827 37841 37841 0.13317071559686156 RLQKKVEQL 9 Unmodified _RLQKKVEQL_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;nc|ENSG00000172216|P17676-3|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.17877197265625 3 381.239907 1140.69789 -1.2245 -0.00046682 1.1305 0.00043099 -0.093996 -3.5835E-05 381.2403143232953 22.545 0.48498 20.757 20.574 21.059 -1.7886 29 13 3 0 0 0 0.10782 1 3565 3565 43.858 16.975 1 1642300 38500 6200 25811 25827 37842 37842 0.13317071559686156 RLQNRLLFHL 10 Unmodified _RLQNRLLFHL_ 0 0 0 nc|ENSG00000105948|A0AVF1-3|IFT56;ENSG00000105948|ENST00000464848|TTC26;nc|ENSG00000105948|A0AVF1-2|IFT56;ENST00000481482.5_1_7:138818528-138853308:+|nuORF nc|ENSG00000105948|A0AVF1-3|IFT56 nc|ENSG00000105948|A0AVF1-3|IFT56 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156677246094 3 437.266568 1308.77787 -0.076776 -3.3572E-05 2.402 0.0010503 2.3252 0.0010167 437.60202908747453 112.06 0.34673 107.53 107.45 107.8 -4.5259 12 9 2 0 0 0 0.76236 1 21510 21510 0.77653 0 1 863000 38501 2353 25812 25828 37843 37843 0.13583557953529635 RLQPALAPP 9 Unmodified _RLQPALAPP_ 0 0 0 REV__ENST00000376509.4_1_X:48776104-48776263:-|nuORF REV__ENST00000376509.4_1_X:48776104-48776263:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7783508300781 2 481.792727 961.5709 NaN NaN NaN NaN NaN NaN NaN 160.79 1 155.56 155.06 156.06 -5.2299 0 0 0 0.23508 1 31223 31223 11.64 0.81637 1 + 38502 21078 25813 25829 37844 37844 0.08857770405359133 RLQQRLRSEQQ 11 Unmodified _RLQQRLRSEQQ_ 0 0 0 ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23919677734375 3 481.270929 1440.79096 NaN NaN NaN NaN NaN NaN NaN 109.8 1 109.8 109.3 110.3 0 0 0 0 0.22632 1 21590 21590 1.4551 1.4492 1 38503 5208 25814 25830 37845 37845 0.08819344274979812 RLQTIKEFFRL 11 Unmodified _RLQTIKEFFRL_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 725.8331298828125 2 725.930086 1449.84562 NaN NaN NaN NaN NaN NaN NaN 170.24 1 165.45 164.95 165.95 -4.7898 0 0 0 0.23379 1 34539 34539 5.2969 0 1 38504 5117 25815 25831 37846 37846 0.13868963093682396 RLQVGAFF 8 Unmodified _RLQVGAFF_ 0 0 0 ENST00000340437.8_1_11:61170494-61170638:-|nuORF ENST00000340437.8_1_11:61170494-61170638:-|nuORF ENST00000340437.8_1_11:61170494-61170638:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.1784362792969 3 313.179989 936.518136 NaN NaN NaN NaN NaN NaN NaN 176.72 1 171.93 171.43 172.43 -4.7898 0 0 0 0.21486 1 36138 36138 0.45834 0 1 38505 8847 25816 25832 37847 37847 0.047338123425674894 RLRALAEP 8 Unmodified _RLRALAEP_ 0 0 0 ENST00000484336.1_1_22:19753345-19753526:+|nuORF;ENST00000329705.11_1_22:19753345-19766776:+|nuORF ENST00000484336.1_1_22:19753345-19753526:+|nuORF ENST00000484336.1_1_22:19753345-19753526:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 309.2036437988281 3 309.190776 924.550499 NaN NaN NaN NaN NaN NaN NaN 81.525 1 77.837 77.337 78.337 -3.6879 0 0 0 0.21486 1 15538 15538 0.40072 0 1 38506 8763 25817 25833 37848 37848 0.08520599745543223 RLRALAEP 8 Unmodified _RLRALAEP_ 0 0 0 ENST00000484336.1_1_22:19753345-19753526:+|nuORF;ENST00000329705.11_1_22:19753345-19766776:+|nuORF ENST00000484336.1_1_22:19753345-19753526:+|nuORF ENST00000484336.1_1_22:19753345-19753526:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 309.1449279785156 3 309.190776 924.550499 NaN NaN NaN NaN NaN NaN NaN 93.933 1 90.089 89.589 90.589 -3.844 0 0 0 0.21486 1 18015 18015 0.40072 0 1 38507 8763 25817 25833 37849 37849 0.08520599745543223 RLREQRQRRHY 11 Unmodified _RLREQRQRRHY_ 0 0 0 REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2783813476562 3 533.301334 1596.88217 NaN NaN NaN NaN NaN NaN NaN 59.134 1 55.82 55.32 56.32 -3.3139 0 0 0 0.22632 1 10996 10996 0.026206 0 1 + 38508 13974 25818 25834 37850 37850 0.10760652762951395 RLREQRQRRHY 11 Unmodified _RLREQRQRRHY_ 0 0 0 REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2760620117188 3 533.301334 1596.88217 NaN NaN NaN NaN NaN NaN NaN 112.46 1 108.19 107.69 108.69 -4.2725 0 0 0 0.22632 1 21656 21656 0.172 0.14579 1 + 38509 13974 25818 25834 37851 37851 0.10760652762951395 RLREVSHHV 9 Unmodified _RLREVSHHV_ 0 0 0 ENST00000579991.2_1_17:56160812-56164456:+|nuORF ENST00000579991.2_1_17:56160812-56164456:+|nuORF ENST00000579991.2_1_17:56160812-56164456:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.1738586425781 3 378.215984 1131.62612 -0.88436 -0.00033448 0.95024 0.00035939 0.065876 2.4915E-05 378.2163598018026 14.801 0.10468 13.686 13.606 13.711 -1.1142 4 2 2 0 0 0 0.58921 1 2247 2247 8.1555 5.0833 1 253530 38510 11487 25819 25835 37852 37852 0.06557576925843023 RLRGFEGK 8 Unmodified _RLRGFEGK_ 0 0 0 nc|ENSG00000240771|Q86VW2-2|ARHGEF25;ENSG00000240771|ENST00000286494|ARHGEF25;nc|ENSG00000240771|Q86VW2-3|ARHGEF25 nc|ENSG00000240771|Q86VW2-2|ARHGEF25 nc|ENSG00000240771|Q86VW2-2|ARHGEF25 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7823791503906 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 128.99 1 124.36 123.86 124.86 -4.6292 0 0 0 0.23312 1 25431 25431 6.2058 6.0829 1 38511 7847 25820 25836 37853 37853 0.06343715602793054 RLRHYYEF 8 Unmodified _RLRHYYEF_ 0 0 0 REV__nc|ENSG00000168961|O00182-3|LGALS9;REV__nc|ENSG00000170298|Q3B8N2-2|LGALS9B REV__nc|ENSG00000168961|O00182-3|LGALS9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.2049865722656 3 395.205085 1182.59343 NaN NaN NaN NaN NaN NaN NaN 90.761 1 86.901 86.401 87.401 -3.8595 0 0 0 0.21486 1 17760 17760 1.6526 0.45928 1 + 38512 24156;18153 25821 25837 37854 37854 0.009433698029624793 RLRKQPKYPRK 11 Unmodified _RLRKQPKYPRK_ 0 0 0 ENST00000498752.1_1_11:43740306-43740693:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27044677734375 3 490.644038 1468.91028 NaN NaN NaN NaN NaN NaN NaN 150.49 1 150.49 149.99 150.99 0 0 0 0 0.22632 1 30130 30130 1.4551 1.4289 1 38513 10610 25822 25838 37855 37855 0.19458582690344883 RLRNLYWKNSY 11 Unmodified _RLRNLYWKNSY_ 0 0 0 REV__OR5AS1|p.E313K|1|0.32|ENSG00000181785|chr11:56031355-56031355|G/A|missense_variant REV__OR5AS1|p.E313K|1|0.32|ENSG00000181785|chr11:56031355-56031355|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 504.9951171875 3 504.94052 1511.79973 NaN NaN NaN NaN NaN NaN NaN 136.56 1 131.92 131.42 132.42 -4.6399 0 0 0 0.23689 1 26948 26948 2.8433 1.5136 1 + 38514 24412 25823 25839 37856 37856 0.06430317911463135 RLRRGHVI 8 Unmodified _RLRRGHVI_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-3|VPS13A REV__nc|ENSG00000197969|Q96RL7-3|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.2375793457031 3 336.217548 1005.63082 NaN NaN NaN NaN NaN NaN NaN 66.377 1 62.881 62.381 63.381 -3.4965 0 0 0 0.21486 1 12438 12438 1.6526 0 1 + 38515 19379 25824 25840 37857 37857 0.12822505859264766 RLRRKFERILY 11 Unmodified _RLRRKFERILY_ 0 0 0 nc|ENSG00000147099|Q9BY41-6|HDAC8;nc|ENSG00000147099|Q9BY41-5|HDAC8;nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8 nc|ENSG00000147099|Q9BY41-6|HDAC8 nc|ENSG00000147099|Q9BY41-6|HDAC8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.1973571777344 5 310.794576 1548.9365 0.22773 7.0779E-05 0.31392 9.7565E-05 0.54166 0.00016834 310.7946019808762 115.67 2.3139 111.09 109.98 112.3 -4.5815 79 65 2 0 0 0 0.96227 1 22135 22135 0 0 1 2511200 38516 4680 25825 25841 37858 37858 0.18398851861843468 RLRRKTPKKK 10 Unmodified _RLRRKTPKKK_ 0 0 0 nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1 nc|ENSG00000048649|Q96T23-3|RSF1 nc|ENSG00000048649|Q96T23-3|RSF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 655.9462890625 2 655.946405 1309.87826 NaN NaN NaN NaN NaN NaN NaN 178.8 1 174.01 173.51 174.51 -4.7898 0 0 0 2.8426 1 36583 36583 0 0 1 38517 1230 25826 25842 37859 37859 0.2357121500717767 RLRRSGRC 8 Unmodified _RLRRSGRC_ 0 0 0 MST1|p.I470Wfs*55|1|0.35|ENSG00000173531|chr3:49685484-49685487|GATT/-|frameshift_variant;nc|ENSG00000173531|P26927|MST1;ENSG00000173531|ENST00000449682|MST1 MST1|p.I470Wfs*55|1|0.35|ENSG00000173531|chr3:49685484-49685487|GATT/-|frameshift_variant MST1|p.I470Wfs*55|1|0.35|ENSG00000173531|chr3:49685484-49685487|GATT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 335.2213134765625 3 335.194526 1002.56175 0.090156 3.022E-05 -0.6044 -0.00020259 -0.51424 -0.00017237 335.194302965959 60.028 0.49903 56.714 56.516 57.015 -3.3139 21 13 2 0 0 0 0.81659 1 11150 11150 3.5965 0 1 1322700 38518 6298 25827 25843 37860 37860 0.06057098568055608 RLRTPQRSL 9 Unmodified _RLRTPQRSL_ 0 0 0 REV__ENSG00000171819|ENST00000376819|ANGPTL7 REV__ENSG00000171819|ENST00000376819|ANGPTL7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.1739196777344 3 376.231634 1125.67307 NaN NaN NaN NaN NaN NaN NaN 75.238 1 71.873 71.373 72.373 -3.3643 0 0 0 0.23508 1 14677 14677 4.5289 0.65253 1 + 38519 18253 25828 25844 37861 37861 0.11526436476970048 RLRVLVKIP 9 Unmodified _RLRVLVKIP_ 0 0 0 REV__ENSG00000187860|ENST00000338306|CCDC157 REV__ENSG00000187860|ENST00000338306|CCDC157 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.5529174804688 2 547.382043 1092.74953 NaN NaN NaN NaN NaN NaN NaN 166.82 1 162.03 161.53 162.53 -4.7898 0 0 0 0.1963 1 33562 33562 0.12781 0.054551 1 + 38520 19117 25829 25845 37862 37862 0.2068686004427036 RLRYTILRKSY 11 Unmodified _RLRYTILRKSY_ 0 0 0 REV__nc|ENSG00000122779|O15164-2|TRIM24 REV__nc|ENSG00000122779|O15164-2|TRIM24 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2632141113281 3 490.296415 1467.86742 NaN NaN NaN NaN NaN NaN NaN 161.78 1 156.64 156.14 157.14 -5.1438 0 0 0 0.22632 1 31420 31420 0.094841 0 1 + 38521 15706 25830 25846 37863 37863 0.15219767842268084 RLSAKPPAKV 10 Unmodified _RLSAKPPAKV_ 0 0 0 ENST00000482192.5_1_21:40719403-40720548:-|nuORF;ENST00000489072.5_1_21:40717866-40720548:-|nuORF;ENST00000471260.1_1_21:40719749-40720542:-|nuORF;ENST00000486741.5_1_21:40720139-40720924:-|nuORF;ENSG00000205581|ENST00000380749|HMGN1;ENST00000479586.5_1_21:40719749-40720924:-|nuORF ENST00000482192.5_1_21:40719403-40720548:-|nuORF ENST00000482192.5_1_21:40719403-40720548:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 356.5220642089844 3 356.229231 1065.66586 -0.23371 -8.3254E-05 0.13917 4.9577E-05 -0.094536 -3.3677E-05 356.2292423207624 24.061 0.79175 24.061 23.409 24.201 0 31 22 2 0 0 0 1.1036 1 4105 4105 14.405 14.278 1 585320 38522 7650 25831 25847 37864 37864 0.13565703876543012 RLSDHPDVR 9 Unmodified _RLSDHPDVR_ 0 0 0 nc|ENSG00000144908|O75891-2|ALDH1L1;ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;ENST00000393431.6_1_3:125831719-125854422:-|nuORF nc|ENSG00000144908|O75891-2|ALDH1L1 nc|ENSG00000144908|O75891-2|ALDH1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7894287109375 2 547.788704 1093.56285 0.49048 0.00026868 2.4376 0.0013353 2.9281 0.001604 547.7897956288471 83.475 0.43024 83.475 83.185 83.615 0 15 11 2 0 0 0 0.48644 1 16271 16271 20.454 3.5113 1 1392400 38523 4584 25832 25848 37865 37865 0.019815914179162064 RLSEEQLR 8 Unmodified _RLSEEQLR_ 0 0 0 REV__nc|ENSG00000139737|Q8ND83-2|SLAIN1 REV__nc|ENSG00000139737|Q8ND83-2|SLAIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.85858154296875 3 344.192845 1029.55671 -0.16374 -5.6357E-05 -0.1442 -4.9634E-05 -0.30794 -0.00010599 344.1928392997538 32.715 1.0479 30.485 30.153 31.201 -2.2305 97 29 5 0 0 0 1.0158 1 6068 6068 10.074 0 1 107540000 + 38524 16542 25833 25849 37866 37866 0.04311073186408976 RLSEEQLR 8 Unmodified _RLSEEQLR_ 0 0 0 REV__nc|ENSG00000139737|Q8ND83-2|SLAIN1 REV__nc|ENSG00000139737|Q8ND83-2|SLAIN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 344.192845 1029.55671 -0.31872 -0.0001097 -0.00079127 -2.7235E-07 -0.31951 -0.00010997 344.1928979839017 30.502 0.62619 30.502 30.199 30.825 0 0.016343 0.00022223 NaN 10.074 66 17 5 NaN NaN NaN NaN 0 NaN NaN 0 137020000 + 38525 16542 25833 25849 0.04311073186408976 RLSEEQLR 8 Unmodified _RLSEEQLR_ 0 0 0 REV__nc|ENSG00000139737|Q8ND83-2|SLAIN1 REV__nc|ENSG00000139737|Q8ND83-2|SLAIN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 344.192845 1029.55671 0.25564 8.7991E-05 -0.56143 -0.00019324 -0.30578 -0.00010525 344.1927154515328 32.592 1.2609 30.445 30.096 31.357 -2.1468 -0.0401 -0.00035668 NaN 10.074 108 35 5 NaN NaN NaN NaN 0 NaN NaN 0 121930000 + 38526 16542 25833 25849 0.04311073186408976 RLSEEQLR 8 Unmodified _RLSEEQLR_ 0 0 0 REV__nc|ENSG00000139737|Q8ND83-2|SLAIN1 REV__nc|ENSG00000139737|Q8ND83-2|SLAIN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 344.192845 1029.55671 -0.24545 -8.4482E-05 -0.087717 -3.0191E-05 -0.33317 -0.00011467 344.192883094276 32.658 1.1442 30.509 30.171 31.315 -2.1483 0.024061 0.00013247 NaN 10.074 111 32 5 NaN NaN NaN NaN 0 NaN NaN 0 95898000 + 38527 16542 25833 25849 0.04311073186408976 RLSEFIPAVF 10 Unmodified _RLSEFIPAVF_ 0 0 0 ENST00000523397.1_1_8:126095350-126096053:-|nuORF;ENSG00000164961|ENST00000318410|WASHC5 ENST00000523397.1_1_8:126095350-126096053:-|nuORF ENST00000523397.1_1_8:126095350-126096053:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2591552734375 2 589.832049 1177.64954 0.68993 0.00040694 -0.94021 -0.00055456 -0.25028 -0.00014762 589.8320485645137 170.36 0.10086 165.57 165.52 165.62 -4.7898 4 2 2 0 0 0 0.69998 1 34576 34576 33.445 18.196 1 7470400 38528 5583 25834 25850 37867 37867 0.06782577919784671 RLSEFIPAVF 10 Unmodified _RLSEFIPAVF_ 0 0 0 ENST00000523397.1_1_8:126095350-126096053:-|nuORF;ENSG00000164961|ENST00000318410|WASHC5 ENST00000523397.1_1_8:126095350-126096053:-|nuORF ENST00000523397.1_1_8:126095350-126096053:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.24853515625 2 589.832049 1177.64954 0.6014 0.00035472 0.50671 0.00029888 1.1081 0.0006536 589.8330581395871 170.51 0.17923 165.59 165.47 165.65 -4.9149 6 4 2 0 0 0 0.45334 1 33715 33715 27.223 7.9662 1 7641600 38529 5583 25834 25850 37868 37868 0.06782577919784671 RLSEFIPAVF 10 Unmodified _RLSEFIPAVF_ 0 0 0 ENST00000523397.1_1_8:126095350-126096053:-|nuORF;ENSG00000164961|ENST00000318410|WASHC5 ENST00000523397.1_1_8:126095350-126096053:-|nuORF ENST00000523397.1_1_8:126095350-126096053:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 589.832049 1177.64954 0.5281 0.00031149 0.11218 6.6167E-05 0.64028 0.00037766 589.8317512000199 170.37 0.16718 165.5 165.4 165.57 -4.873 -0.055882 0.00040264 NaN 27.223 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 5123200 38530 5583 25834 25850 0.06782577919784671 RLSELGITQA 10 Unmodified _RLSELGITQA_ 0 0 0 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77734375 2 544.308938 1086.60332 0.16286 8.8649E-05 -0.21434 -0.00011667 -0.051479 -2.8021E-05 544.3088424296607 86.237 0.72026 82.51 82.117 82.837 -3.727 33 19 2 0 0 0 0.45984 1 16849 16849 46.022 14.754 1 8462900 38531 6131 25835 25851 37869 37869 0.06348513017701407 RLSELGITQA 10 Unmodified _RLSELGITQA_ 0 0 0 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7966918945312 2 544.308938 1086.60332 0.2873 0.00015638 -0.39002 -0.00021229 -0.10272 -5.5912E-05 544.3087336591319 86.417 0.66579 82.467 82.158 82.824 -3.9503 35 18 2 0 0 0 0.52698 1 16442 16442 42.312 11.044 1 8665400 38532 6131 25835 25851 37870 37870 0.06348513017701407 RLSELGITQA 10 Unmodified _RLSELGITQA_ 0 0 0 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7962646484375 2 544.308938 1086.60332 0.16384 8.9178E-05 -0.21736 -0.00011831 -0.053527 -2.9135E-05 544.3087853076017 86.285 0.73849 82.556 82.205 82.943 -3.7289 37 20 2 0 0 0 0.52698 1 16479 16479 29.437 11.291 1 7773700 38533 6131 25835 25851 37871 37871 0.06348513017701407 RLSETDFKV 9 Unmodified _RLSETDFKV_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7786865234375 2 547.795663 1093.57677 0.43095 0.00023607 -0.1609 -8.8143E-05 0.27005 0.00014793 547.7954699467235 74.596 0.87282 74.596 74.048 74.921 0 58 24 3 0 0 0 0.10537 3 14419 14419;14421;14483 60.47 38.361 1 8498000 38534 4656 25836 25852 37872;37873;37874 37872 0.03372824126358864 RLSETDFKV 9 Unmodified _RLSETDFKV_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7679443359375 2 547.795663 1093.57677 0.18219 9.9801E-05 0.0061647 3.377E-06 0.18835 0.00010318 547.7956096680497 77.523 0.99234 74.06 73.683 74.676 -3.4633 64 27 3 0 0 0 0.43219 2 15087 15067;15087 23.79 13.535 1 5611000 38535 4656 25836 25852 37875;37876 37876 0.03372824126358864 RLSETDFKV 9 Unmodified _RLSETDFKV_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7843017578125 2 547.795663 1093.57677 0.034587 1.8947E-05 0.75771 0.00041507 0.7923 0.00043402 547.795928642478 78.023 0.95163 74.256 73.644 74.596 -3.7664 61 26 3 0 0 0 0.088942 4 14768 14763;14768;14815;14817 59.368 31.96 1 4210300 38536 4656 25836 25852 37877;37878;37879;37880 37878 0.03372824126358864 RLSETDFKV 9 Unmodified _RLSETDFKV_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7852783203125 2 547.795663 1093.57677 0.12424 6.8059E-05 0.49211 0.00026958 0.61635 0.00033764 547.7958115123861 77.882 1.0173 74.223 73.712 74.729 -3.6588 64 28 3 0 0 0 0.35556 1 14911 14911 13.535 5.3794 1 6745400 38537 4656 25836 25852 37881 37881 0.03372824126358864 RLSETDFKV 9 Unmodified _RLSETDFKV_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.795663 1093.57677 0.18219 9.9801E-05 0.0061647 3.377E-06 0.18835 0.00010318 547.7956096680497 77.523 0.99234 74.06 73.683 74.676 -3.4633 -0.11973 -0.00043353 NaN 59.368 64 27 3 NaN NaN NaN NaN 0 NaN NaN 0 5611000 38538 4656 25836 25852 0.03372824126358864 RLSGIKEVSY 10 Unmodified _RLSGIKEVSY_ 0 0 0 REV__ENSG00000117791|ENST00000366913|MTARC2 REV__ENSG00000117791|ENST00000366913|MTARC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3273315429688 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 117.7 1 113.2 112.7 113.7 -4.502 0 0 0 2.8426 1 23201 23201 0.84494 0 1 + 38539 15530 25837 25853 37882 37882 0.06533086051808823 RLSNRVVRV 9 Unmodified _RLSNRVVRV_ 0 0 0 ENSG00000147592|ENST00000276590|LACTB2;LACTB2|p.L104Tfs*28|2|0.27|ENSG00000147592|chr8:70657859-70657860|-/T|frameshift_variant ENSG00000147592|ENST00000276590|LACTB2 ENSG00000147592|ENST00000276590|LACTB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.2041320800781 3 366.899996 1097.67816 0.31908 0.00011707 -0.52741 -0.00019351 -0.20833 -7.6436E-05 366.8997917808338 30.723 0.63419 28.83 28.556 29.19 -1.8928 49 17 4 0 0 0 0.87876 1 5235 5235 3.5871 0 1 14183000 38540 4711 25838 25854 37883 37883 0.1332274033959493 RLSNRVVRV 9 Unmodified _RLSNRVVRV_ 0 0 0 ENSG00000147592|ENST00000276590|LACTB2;LACTB2|p.L104Tfs*28|2|0.27|ENSG00000147592|chr8:70657859-70657860|-/T|frameshift_variant ENSG00000147592|ENST00000276590|LACTB2 ENSG00000147592|ENST00000276590|LACTB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.9023742675781 3 366.899996 1097.67816 -0.16433 -6.0291E-05 -0.067632 -2.4814E-05 -0.23196 -8.5105E-05 366.8999475260313 30.881 0.63155 28.807 28.5 29.131 -2.0743 51 17 4 0 0 0 0.25976 1 5327 5327 22.109 13.953 1 12801000 38541 4711 25838 25854 37884 37884 0.1332274033959493 RLSNRVVRV 9 Unmodified _RLSNRVVRV_ 0 0 0 ENSG00000147592|ENST00000276590|LACTB2;LACTB2|p.L104Tfs*28|2|0.27|ENSG00000147592|chr8:70657859-70657860|-/T|frameshift_variant ENSG00000147592|ENST00000276590|LACTB2 ENSG00000147592|ENST00000276590|LACTB2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 366.899996 1097.67816 -0.16387 -6.0125E-05 -0.068365 -2.5083E-05 -0.23224 -8.5208E-05 366.89993849062324 28.788 0.56482 28.788 28.491 29.056 0 -0.0061352 0.00023406 NaN 22.109 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 14227000 38542 4711 25838 25854 0.1332274033959493 RLSNRVVRV 9 Unmodified _RLSNRVVRV_ 0 0 0 ENSG00000147592|ENST00000276590|LACTB2;LACTB2|p.L104Tfs*28|2|0.27|ENSG00000147592|chr8:70657859-70657860|-/T|frameshift_variant ENSG00000147592|ENST00000276590|LACTB2 ENSG00000147592|ENST00000276590|LACTB2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 366.899996 1097.67816 0.15001 5.504E-05 -0.4263 -0.00015641 -0.27629 -0.00010137 366.8998150638044 30.869 0.70081 28.752 28.472 29.173 -2.1167 -0.042228 -0.00015993 NaN 22.109 55 19 4 NaN NaN NaN NaN 0 NaN NaN 0 12948000 38543 4711 25838 25854 0.1332274033959493 RLSPSPHL 8 Unmodified _RLSPSPHL_ 0 0 0 REV__ENST00000356613.3_2_8:143694046-143694295:-|nuORF REV__ENST00000356613.3_2_8:143694046-143694295:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76055908203125 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 129.91 1 125.07 124.57 125.57 -4.8355 0 0 0 0.21486 1 24942 24942 12.532 0 1 + 38544 20815 25839 25855 37885 37885 0.051766243371730525 RLSSAWAK 8 Unmodified _RLSSAWAK_ 0 0 0 REV__ENST00000541523.1_1_12:124155677-124155818:+|nuORF REV__ENST00000541523.1_1_12:124155677-124155818:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24468994140625 2 459.761426 917.5083 NaN NaN NaN NaN NaN NaN NaN 105.03 1 100.97 100.47 101.47 -4.0543 0 0 0 0.23664 1 20200 20200 3.2813 2.6545 1 + 38545 22865 25840 25856 37886 37886 0.046246243371683704 RLSVEIYDK 9 Unmodified _RLSVEIYDK_ 0 0 0 nc|ENSG00000082482|O95069-2|KCNK2;nc|ENSG00000082482|O95069-3|KCNK2;ENSG00000082482|ENST00000444842|KCNK2 nc|ENSG00000082482|O95069-2|KCNK2 nc|ENSG00000082482|O95069-2|KCNK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2113342285156 3 374.876634 1121.60807 -0.31484 -0.00011802 0.13448 5.0414E-05 -0.18035 -6.761E-05 375.21098574634493 18.262 0.34709 16.951 16.761 17.108 -1.3109 13 9 2 0 0 0 0.60489 1 2974 2974 2.4985 0 1 794880 38546 1639 25841 25857 37887 37887 0.05213397160468958 RLSVEIYDK 9 Unmodified _RLSVEIYDK_ 0 0 0 nc|ENSG00000082482|O95069-2|KCNK2;nc|ENSG00000082482|O95069-3|KCNK2;ENSG00000082482|ENST00000444842|KCNK2 nc|ENSG00000082482|O95069-2|KCNK2 nc|ENSG00000082482|O95069-2|KCNK2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 374.876634 1121.60807 -0.38955 -0.00014603 0.27673 0.00010374 -0.11282 -4.2293E-05 374.87685857231776 18.211 0.40343 16.939 16.696 17.099 -1.2722 -0.0059868 6.8811E-05 NaN 2.4985 18 11 3 NaN NaN NaN NaN 0 NaN NaN 0 780970 38547 1639 25841 25857 0.05213397160468958 RLSVKQLVIR 10 Unmodified _RLSVKQLVIR_ 0 0 0 ENST00000467609.5_1_17:19582001-19584787:-|nuORF;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2 ENST00000467609.5_1_17:19582001-19584787:-|nuORF ENST00000467609.5_1_17:19582001-19584787:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 404.3095703125 3 404.603068 1210.78738 0.20503 8.2956E-05 -0.63927 -0.00025865 -0.43424 -0.00017569 404.60276051829374 76.029 0.48952 76.029 75.783 76.273 0 20 13 2 0 0 0 0.91149 1 14754 14754 8.4443 0 1 1070900 38548 6685 25842 25858 37888 37888 0.19041326239062073 RLSYRKKK 8 Unmodified _RLSYRKKK_ 0 0 0 ENST00000273258.3_1_3:69154031-69154163:+|nuORF ENST00000273258.3_1_3:69154031-69154163:+|nuORF ENST00000273258.3_1_3:69154031-69154163:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.214111328125 3 360.232975 1077.6771 NaN NaN NaN NaN NaN NaN NaN 52.57 1 49.686 49.186 50.186 -2.8837 0 0 0 0.21486 1 10007 10007 1.3295 0.25807 1 38549 8419 25843 25859 37889 37889 0.14136525970684488 RLTDVALV 8 Unmodified _RLTDVALV_ 0 0 0 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 443.763671875 2 443.77146 885.528367 -0.093987 -4.1709E-05 -0.00075895 -3.368E-07 -0.094746 -4.2046E-05 443.7715004884125 94.765 0.60442 90.715 90.428 91.033 -4.0496 28 16 2 0 0 0 8448 1 18604 18604 14.838 0 1 2395300 + 38550 18527 25844 25860 37890 37890 0.08102375277144347 RLTDVALV 8 Unmodified _RLTDVALV_ 0 0 0 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 443.77146 885.528367 -0.093987 -4.1709E-05 -0.00075895 -3.368E-07 -0.094746 -4.2046E-05 443.7715004884125 94.765 0.60442 90.715 90.428 91.033 -4.0496 -0.059879 -8.6008E-05 NaN 14.838 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2395300 + 38551 18527 25844 25860 0.08102375277144347 RLTDVALV 8 Unmodified _RLTDVALV_ 0 0 0 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 443.77146 885.528367 0.12143 5.3885E-05 0.10594 4.7015E-05 0.22737 0.0001009 443.77148433286254 94.964 0.59421 90.773 90.473 91.068 -4.1911 -0.0023865 8.6952E-06 NaN 14.838 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2634500 + 38552 18527 25844 25860 0.08102375277144347 RLTDVALV 8 Unmodified _RLTDVALV_ 0 0 0 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 443.77146 885.528367 -0.104 -4.6151E-05 0.17266 7.6623E-05 0.068668 3.0473E-05 443.77151821456266 94.719 0.6224 90.838 90.536 91.158 -3.881 0.062265 6.7912E-05 NaN 14.838 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2130000 + 38553 18527 25844 25860 0.08102375277144347 RLTDYISKV 9 Unmodified _RLTDYISKV_ 0 0 0 ENSG00000144746|ENST00000273258|ARL6IP5 ENSG00000144746|ENST00000273258|ARL6IP5 ENSG00000144746|ENST00000273258|ARL6IP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7723388671875 2 547.813856 1093.61316 0.10243 5.6114E-05 0.06629 3.6315E-05 0.16872 9.2429E-05 547.8138253621031 103.13 0.58501 98.948 98.66 99.245 -4.1861 41 16 3 0 0 0 0.12656 1 20287 20287 69.338 9.9698 1 7213300 38554 4577 25845 25861 37891 37891 0.07009701023071102 RLTDYISKV 9 Unmodified _RLTDYISKV_ 0 0 0 ENSG00000144746|ENST00000273258|ARL6IP5 ENSG00000144746|ENST00000273258|ARL6IP5 ENSG00000144746|ENST00000273258|ARL6IP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7716064453125 2 547.813856 1093.61316 0.66855 0.00036624 -0.4607 -0.00025238 0.20784 0.00011386 547.813528219805 103.13 0.67934 99.108 98.77 99.45 -4.0212 48 18 3 0 0 0 0.10378 1 19839 19839 42.312 8.0908 1 6364300 38555 4577 25845 25861 37892 37892 0.07009701023071102 RLTEDKVY 8 Unmodified _RLTEDKVY_ 0 0 0 MER34A_dup1023|chr11:33702486-33702773:+|1.02531724208739|0.0170586342162612|5.91|478.0|12|1|anti-sense MER34A_dup1023|chr11:33702486-33702773:+|1.02531724208739|0.0170586342162612|5.91|478.0|12|1|anti-sense MER34A_dup1023|chr11:33702486-33702773:+|1.02531724208739|0.0170586342162612|5.91|478.0|12|1|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 512.2543334960938 2 512.277106 1022.53966 0.09697 4.9675E-05 0.062363 3.1947E-05 0.15933 8.1622E-05 512.2770405069059 91.328 0.66345 87.519 87.164 87.827 -3.8083 42 18 3 0 0 0 0.88497 1 17534 17534 10.074 9.6657 1 3208600 38556 12131 25846 25862 37893 37893 0.029291525806115715 RLTEDKVY 8 Unmodified _RLTEDKVY_ 0 0 0 MER34A_dup1023|chr11:33702486-33702773:+|1.02531724208739|0.0170586342162612|5.91|478.0|12|1|anti-sense MER34A_dup1023|chr11:33702486-33702773:+|1.02531724208739|0.0170586342162612|5.91|478.0|12|1|anti-sense MER34A_dup1023|chr11:33702486-33702773:+|1.02531724208739|0.0170586342162612|5.91|478.0|12|1|anti-sense MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 512.277106 1022.53966 0.11766 6.0274E-05 0.00089534 4.5866E-07 0.11856 6.0733E-05 512.2770682436203 87.611 0.62801 87.611 87.255 87.883 0 0.089977 -0.00019362 NaN 10.074 37 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2809800 38557 12131 25846 25862 0.029291525806115715 RLTEDKVY 8 Unmodified _RLTEDKVY_ 0 0 0 MER34A_dup1023|chr11:33702486-33702773:+|1.02531724208739|0.0170586342162612|5.91|478.0|12|1|anti-sense MER34A_dup1023|chr11:33702486-33702773:+|1.02531724208739|0.0170586342162612|5.91|478.0|12|1|anti-sense MER34A_dup1023|chr11:33702486-33702773:+|1.02531724208739|0.0170586342162612|5.91|478.0|12|1|anti-sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 512.277106 1022.53966 -0.17621 -9.0268E-05 0.38608 0.00019778 0.20987 0.00010751 512.2770963451372 91.385 0.72557 87.46 87.098 87.823 -3.9251 -0.061632 0.00020103 NaN 10.074 55 20 4 NaN NaN NaN NaN 0 NaN NaN 0 3517500 38558 12131 25846 25862 0.029291525806115715 RLTEDKVY 8 Unmodified _RLTEDKVY_ 0 0 0 MER34A_dup1023|chr11:33702486-33702773:+|1.02531724208739|0.0170586342162612|5.91|478.0|12|1|anti-sense MER34A_dup1023|chr11:33702486-33702773:+|1.02531724208739|0.0170586342162612|5.91|478.0|12|1|anti-sense MER34A_dup1023|chr11:33702486-33702773:+|1.02531724208739|0.0170586342162612|5.91|478.0|12|1|anti-sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 512.277106 1022.53966 -0.17557 -8.9939E-05 0.26974 0.00013818 0.094171 4.8242E-05 512.277212327755 91.589 0.68713 87.495 87.087 87.774 -4.0946 -0.026383 8.1826E-05 NaN 10.074 48 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3591500 38559 12131 25846 25862 0.029291525806115715 RLTINVNQL 9 Unmodified _RLTINVNQL_ 0 0 0 REV__ENST00000420550.1_1_1:224044699-224045026:-|nuORF REV__ENST00000420550.1_1_1:224044699-224045026:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.548583984375 3 357.548741 1069.62439 -0.30575 -0.00010932 0.022915 8.1933E-06 -0.28284 -0.00010113 357.54873532620655 76.159 0.70627 72.744 72.439 73.145 -3.4151 26 19 2 0 0 0 0.63326 1 14887 14887 10.8 0 1 1465000 + 38560 17899 25847 25863 37894 37894 0.09236523117237994 RLTKMAGP 8 Unmodified _RLTKMAGP_ 0 0 0 REV__ENST00000543587.5_3_11:71822512-71823788:-|nuORF REV__ENST00000543587.5_3_11:71822512-71823788:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.24945068359375 2 437.25238 872.490207 NaN NaN NaN NaN NaN NaN NaN 97.398 1 93.479 92.979 93.979 -3.9194 0 0 0 0.23025 1 18691 18691 0.12286 0 1 + 38561 22878 25848 25864 37895 37895 0.04886166090830102 RLTKTLATI 9 Unmodified _RLTKTLATI_ 0 0 0 ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12;ENST00000490962.1_1_3:72926686-72926866:-|nuORF ENST00000584289.5_1_17:65341859-65362635:-|nuORF ENST00000584289.5_1_17:65341859-65362635:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 509.2387390136719 2 508.826766 1015.63898 -0.22522 -0.0001146 0.344 0.00017504 0.11878 6.0438E-05 508.82676739221506 63.425 0.52932 60.009 59.757 60.286 -3.4158 24 14 3 0 0 0 0.54058 1 11808 11808 12.241 7.3436 1 1230400 38562 7339 25849 25865 37896 37896 0.13178595265389959 RLTKTLATI 9 Unmodified _RLTKTLATI_ 0 0 0 ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12;ENST00000490962.1_1_3:72926686-72926866:-|nuORF ENST00000584289.5_1_17:65341859-65362635:-|nuORF ENST00000584289.5_1_17:65341859-65362635:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 508.826766 1015.63898 -0.026415 -1.3441E-05 0.051032 2.5967E-05 0.024617 1.2526E-05 508.8268116387839 62.884 0.51452 59.923 59.641 60.155 -2.9614 -0.042027 -6.9296E-05 NaN 12.241 28 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2053800 38563 7339 25849 25865 0.13178595265389959 RLTKTLATI 9 Unmodified _RLTKTLATI_ 0 0 0 ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12;ENST00000490962.1_1_3:72926686-72926866:-|nuORF ENST00000584289.5_1_17:65341859-65362635:-|nuORF ENST00000584289.5_1_17:65341859-65362635:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 508.826766 1015.63898 0.1797 9.1434E-05 -0.041987 -2.1364E-05 0.13771 7.007E-05 508.8265630547925 63.219 0.48576 59.963 59.743 60.229 -3.2567 -0.0021821 -0.00016396 NaN 12.241 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1327500 38564 7339 25849 25865 0.13178595265389959 RLTLRPIV 8 Unmodified _RLTLRPIV_ 0 0 0 REV__ENSG00000165632|ENST00000344293|TAF3 REV__ENSG00000165632|ENST00000344293|TAF3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 484.7784729003906 2 484.324194 966.633835 NaN NaN NaN NaN NaN NaN NaN 160.28 1 160.28 159.78 160.78 0 0 0 0 0.21486 1 32186 32186 6.7232 0 1 + 38565 17787 25850 25866 37897 37897 0.14918336193409232 RLTPKLMEV 9 Unmodified _RLTPKLMEV_ 0 0 0 EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant;ENSG00000147677|ENST00000521861|EIF3H EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7899780273438 2 543.820627 1085.6267 0.21595 0.00011744 -0.33296 -0.00018107 -0.11701 -6.3632E-05 543.8205083197143 88.876 0.92267 88.876 88.467 89.39 0 81 25 5 0 0 0 0.030811 2 17391 17294;17391 80.676 32.927 1 51800000 38566 931 25851 25867 37898;37899 37899 0.08731235530672166 RLTPKLMEV 9 Unmodified _RLTPKLMEV_ 0 0 0 EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant;ENSG00000147677|ENST00000521861|EIF3H EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7764892578125 2 543.820627 1085.6267 0.20025 0.0001089 -0.32451 -0.00017648 -0.12426 -6.7577E-05 543.8205259065938 92.518 0.90635 88.593 88.161 89.067 -3.9251 89 25 5 0 0 0 0.12612 1 18175 18175 47.594 19.966 1 75739000 38567 931 25851 25867 37900 37900 0.08731235530672166 RLTPKLMEV 9 Unmodified _RLTPKLMEV_ 0 0 0 EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant;ENSG00000147677|ENST00000521861|EIF3H EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.794189453125 2 543.820627 1085.6267 0.27946 0.00015198 -0.25348 -0.00013785 0.025984 1.413E-05 543.8205259975983 92.646 1.1813 88.502 88.031 89.213 -4.1435 95 33 5 0 0 0 0.26842 1 17717 17717 33.445 17.296 1 91484000 38568 931 25851 25867 37901 37901 0.08731235530672166 RLTPKLMEV 9 Unmodified _RLTPKLMEV_ 0 0 0 EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant;ENSG00000147677|ENST00000521861|EIF3H EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7879638671875 2 543.820627 1085.6267 0.18073 9.8284E-05 -0.1881 -0.00010229 -0.0073676 -4.0067E-06 543.8206217914341 92.382 1.2938 88.574 88.14 89.434 -3.8083 114 37 5 0 0 0 0.0067515 2 17732 17654;17732 111.31 63.56 1 62825000 38569 931 25851 25867 37902;37903 37903 0.08731235530672166 RLTPKLMEV 9 Unmodified _RLTPKLMEV_ 0 0 0 EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant;ENSG00000147677|ENST00000521861|EIF3H EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.820627 1085.6267 0.21433 0.00011656 -1.0272 -0.00055861 -0.81287 -0.00044206 543.8199778350541 93.178 0.31235 89.187 89.002 89.314 -3.9907 0.15585 -0.00065256 NaN 80.676 14 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1245200 38570 931 25851 25867 0.08731235530672166 RLTQELQQA 9 Unmodified _RLTQELQQA_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant;CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7794189453125 2 543.798737 1085.58292 0.53037 0.00028842 -0.20698 -0.00011256 0.32339 0.00017586 543.798938027721 41.586 0.45398 41.586 41.34 41.794 0 20 12 2 0 0 0 0.080883 1 7769 7769 61.602 5.4249 1 1725900 38571 3001 25852 25868 37904 37904 0.043553423578941874 RLTQELQQA 9 Unmodified _RLTQELQQA_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant;CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7696533203125 2 543.798737 1085.58292 0.17848 9.7055E-05 -0.40819 -0.00022197 -0.22972 -0.00012492 543.7984971545902 44.388 0.38665 41.598 41.425 41.812 -2.79 17 10 2 0 0 0 0.52027 1 8358 8358 18.373 4.467 1 2725800 38572 3001 25852 25868 37905 37905 0.043553423578941874 RLTQELQQA 9 Unmodified _RLTQELQQA_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant;CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7875366210938 2 543.798737 1085.58292 -0.014684 -7.9851E-06 0.15584 8.4747E-05 0.14116 7.6762E-05 543.7985418853149 44.398 0.44579 41.632 41.495 41.94 -2.7661 21 12 2 0 0 0 0.051332 1 8029 8029 70.332 5.097 1 2252900 38573 3001 25852 25868 37906 37906 0.043553423578941874 RLTQELQQA 9 Unmodified _RLTQELQQA_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant;CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.798737 1085.58292 0.0024407 1.3273E-06 0.34266 0.00018634 0.3451 0.00018766 543.7989327608394 44.421 0.52412 41.673 41.43 41.954 -2.7475 0.051024 0.00028001 NaN 70.332 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2002800 38574 3001 25852 25868 0.043553423578941874 RLTSFNELV 9 Unmodified _RLTSFNELV_ 0 0 0 REV__nc|ENSG00000108395|O94972-2|TRIM37 REV__nc|ENSG00000108395|O94972-2|TRIM37 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 87.401 1 83.674 83.174 84.174 -3.727 0 0 0 0.23508 1 17089 17089 4.1895 0 1 + 38575 15120 25853 25869 37907 37907 0.046171279889904326 RLTSFNELV 9 Unmodified _RLTSFNELV_ 0 0 0 REV__nc|ENSG00000108395|O94972-2|TRIM37 REV__nc|ENSG00000108395|O94972-2|TRIM37 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 87.548 1 83.552 83.052 84.052 -3.9953 0 0 0 0.23508 1 16673 16673 4.897 0 1 + 38576 15120 25853 25869 37908 37908 0.046171279889904326 RLTSFNELV 9 Unmodified _RLTSFNELV_ 0 0 0 REV__nc|ENSG00000108395|O94972-2|TRIM37 REV__nc|ENSG00000108395|O94972-2|TRIM37 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2022399902344 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 92.708 1 88.564 88.064 89.064 -4.1435 0 0 0 0.23508 1 17664 17664 4.1895 0 1 + 38577 15120 25853 25869 37909 37909 0.046171279889904326 RLTSFNELV 9 Unmodified _RLTSFNELV_ 0 0 0 REV__nc|ENSG00000108395|O94972-2|TRIM37 REV__nc|ENSG00000108395|O94972-2|TRIM37 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 92.349 1 88.54 88.04 89.04 -3.8083 0 0 0 0.23508 1 17695 17695 6.1918 2.0023 1 + 38578 15120 25853 25869 37910 37910 0.046171279889904326 RLTTIVQL 8 Unmodified _RLTTIVQL_ 0 0 0 REV__nc|ENSG00000039560|Q9P0K7-4|RAI14 REV__nc|ENSG00000039560|Q9P0K7-4|RAI14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 472.8492431640625 2 472.300384 942.586216 -0.073999 -3.495E-05 0.27271 0.0001288 0.19871 9.3852E-05 472.3003346522144 139.03 0.3867 139.03 138.73 139.12 0 16 10 2 0 0 0 8448 1 27566 27566 0.68139 0.3018 1 2267000 + 38579 14044 25854 25870 37911 37911 0.112626372025602 RLTTIVQL 8 Unmodified _RLTTIVQL_ 0 0 0 REV__nc|ENSG00000039560|Q9P0K7-4|RAI14 REV__nc|ENSG00000039560|Q9P0K7-4|RAI14 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 472.300384 942.586216 -0.073999 -3.495E-05 0.27271 0.0001288 0.19871 9.3852E-05 472.3003346522144 139.03 0.3867 139.03 138.73 139.12 0 0 0 NaN 0.68139 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2267000 + 38580 14044 25854 25870 0.112626372025602 RLVAPLALP 9 Unmodified _RLVAPLALP_ 0 0 0 REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1954345703125 3 317.211289 948.612037 NaN NaN NaN NaN NaN NaN NaN 8.0924 1 7.028 6.528 7.528 -1.0645 0 0 0 0.23508 1 764 764 0 0 1 + 38581 16539 25855 25871 37912 37912 0.13567531444823544 RLVAQRLLIY 10 Unmodified _RLVAQRLLIY_ 0 0 0 REV__ENSG00000160951|ENST00000292513|PTGER1 REV__ENSG00000160951|ENST00000292513|PTGER1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7745361328125 2 622.895515 1243.77648 NaN NaN NaN NaN NaN NaN NaN 108.96 1 108.96 108.46 109.46 0 0 0 0 0.22588 1 21424 21424 4.3292 0 1 + 38582 17442 25856 25872 37913 37913 0.1643392386481537 RLVEQSLSF 9 Unmodified _RLVEQSLSF_ 0 0 0 REV__ENSG00000184584|ENST00000330794|STING1 REV__ENSG00000184584|ENST00000330794|STING1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20123291015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 88.57 1 84.777 84.277 85.277 -3.7926 0 0 0 0.23508 1 17327 17327 7.609 0.97858 1 + 38583 18906 25857 25873 37914 37914 0.046171279889904326 RLVKRLYF 8 Unmodified _RLVKRLYF_ 0 0 0 ENSG00000174529|ENST00000367167|TMEM81 ENSG00000174529|ENST00000367167|TMEM81 ENSG00000174529|ENST00000367167|TMEM81 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7818603515625 2 547.845294 1093.67603 NaN NaN NaN NaN NaN NaN NaN 138.1 1 133.26 132.76 133.76 -4.84 0 0 0 0.2396 1 26610 26610 0.12286 0 1 38584 6357 25858 25874 37915 37915 0.13294311601794107 RLVLKPIKRKK 11 Unmodified _RLVLKPIKRKK_ 0 0 0 REV__nc|ENSG00000146966|Q9ULE3-2|DENND2A REV__nc|ENSG00000146966|Q9ULE3-2|DENND2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 689.8781127929688 2 689.990281 1377.96601 NaN NaN NaN NaN NaN NaN NaN 173.08 1 173.08 172.58 173.58 0 0 0 0 0.22632 1 35770 35770 0 0 1 + 38585 16913 25859 25875 37916 37916 0.29214415877936517 RLVLVKPP 8 Unmodified _RLVLVKPP_ 0 0 0 REV__AluSp_dup12528|chr4:108625371-108625684:-|1.1205789574276814|0.0295741133308953|5.24|467.0|20|3|anti-sense REV__AluSp_dup12528|chr4:108625371-108625684:-|1.1205789574276814|0.0295741133308953|5.24|467.0|20|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5439147949219 2 461.315838 920.617122 NaN NaN NaN NaN NaN NaN NaN 96.11 1 92.229 91.729 92.729 -3.881 0 0 0 0.21486 1 18446 18446 0.79363 0 1 + 38586 13025 25860 25876 37917 37917 0.15363835307448426 RLWDFDQY 8 Unmodified _RLWDFDQY_ 0 0 0 REV__SNX30|p.R130C|1|0.04|ENSG00000148158|chr9:112817744-112817744|C/T|missense_variant REV__SNX30|p.R130C|1|0.04|ENSG00000148158|chr9:112817744-112817744|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2135925292969 3 381.513696 1141.51926 -0.39723 -0.00015155 -0.1509 -5.757E-05 -0.54813 -0.00020912 381.5136589493093 51.789 0.30536 48.907 48.732 49.037 -2.8824 10 8 2 0 0 0 1.0265 1 9818 9818 3.9444 1.2092 1 433810 + 38587 16963 25861 25877 37918 37918 -0.045840180791856255 RLWDHATMTEV 11 Unmodified _RLWDHATMTEV_ 0 0 0 ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP;ENST00000295493.3_1_7:42959099-42959252:+|nuORF ENSG00000023734|ENST00000419869|STRAP ENSG00000023734|ENST00000419869|STRAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7547607421875 3 453.555566 1357.64487 NaN NaN NaN NaN NaN NaN NaN 96.291 1 96.291 95.791 96.791 0 0 0 0 0.22632 1 18864 18864 5.4027 5.3079 1 38588 1134 25862 25878 37919 37919 -0.019646742852728494 RLWDHATMTEV 11 Unmodified _RLWDHATMTEV_ 0 0 0 ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP;ENST00000295493.3_1_7:42959099-42959252:+|nuORF ENSG00000023734|ENST00000419869|STRAP ENSG00000023734|ENST00000419869|STRAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75140380859375 3 453.555566 1357.64487 0.2362 0.00010713 -0.14697 -6.666E-05 0.089225 4.0468E-05 453.55542920945373 100.7 0.5462 96.405 96.09 96.636 -4.297 29 15 3 0 0 0 0.47934 1 19244 19244 24.229 17.605 1 2507300 38589 1134 25862 25878 37920 37920 -0.019646742852728494 RLWDHATMTEV 11 Unmodified _RLWDHATMTEV_ 0 0 0 ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP;ENST00000295493.3_1_7:42959099-42959252:+|nuORF ENSG00000023734|ENST00000419869|STRAP ENSG00000023734|ENST00000419869|STRAP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 453.555566 1357.64487 -0.081766 -3.7086E-05 0.0648 2.939E-05 -0.016966 -7.6952E-06 453.5556210215951 100.6 0.72084 96.445 96.081 96.802 -4.1594 0.0069975 0.00020192 NaN 24.229 42 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2716300 38590 1134 25862 25878 -0.019646742852728494 RLWDHATMTEV 11 Unmodified _RLWDHATMTEV_ 0 0 0 ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP;ENST00000295493.3_1_7:42959099-42959252:+|nuORF ENSG00000023734|ENST00000419869|STRAP ENSG00000023734|ENST00000419869|STRAP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 453.555566 1357.64487 0.27168 0.00012322 -0.1612 -7.3113E-05 0.11048 5.0109E-05 453.5554429133244 100.45 0.51109 96.463 96.142 96.653 -3.9895 0.025418 -0.00010559 NaN 24.229 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1944900 38591 1134 25862 25878 -0.019646742852728494 RLWHVVGI 8 Unmodified _RLWHVVGI_ 0 0 0 ENSG00000181585|ENST00000643606|TMIE ENSG00000181585|ENST00000643606|TMIE ENSG00000181585|ENST00000643606|TMIE MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2671813964844 2 490.295436 978.57632 -0.075272 -3.6906E-05 0.38515 0.00018884 0.30988 0.00015193 490.29551567822926 129.38 0.91946 124.64 124.22 125.14 -4.7408 41 25 2 0 0 0 8448 1 24889 24889 6.2058 0 1 1844600 38592 6730 25863 25879 37921 37921 0.08617493987844682 RLWRRFAPLRL 11 Unmodified _RLWRRFAPLRL_ 0 0 0 REV__ENST00000488170.5_1_3:160821302-160822604:-|nuORF REV__ENST00000488170.5_1_3:160821302-160822604:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 495.3074035644531 3 495.308878 1482.90481 NaN NaN NaN NaN NaN NaN NaN 14.757 1 13.643 13.143 14.143 -1.1142 0 0 0 0.22632 1 2233 2233 0.50596 0 1 + 38593 22272 25864 25880 37922 37922 0.182669038985523 RLWRRQEWWRL 11 Unmodified _RLWRRQEWWRL_ 0 0 0 TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3838500976562 2 842.9684 1683.92225 NaN NaN NaN NaN NaN NaN NaN 171.51 1 166.6 166.1 167.1 -4.9149 0 0 0 0.23698 1 33974 33974 0.26902 0.033176 1 38594 25816 25865 25881 37923 37923 0.10764199433538124 RLWRSTLLKR 10 Unmodified _RLWRSTLLKR_ 0 0 0 ENST00000471347.5_1_1:15654853-15671627:+|nuORF ENST00000471347.5_1_1:15654853-15671627:+|nuORF ENST00000471347.5_1_1:15654853-15671627:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.98138427734375 4 332.962295 1327.82007 -0.51193 -0.00017045 -0.52882 -0.00017608 -1.0408 -0.00034653 332.9621303025211 15.939 0.20925 15.939 15.814 16.023 0 10 5 2 0 0 0 0.76781 1 2431 2431 0.13989 0 1 1211800 38595 10211 25866 25882 37924 37924 0.16927533361899805 RLWRSTLLKR 10 Unmodified _RLWRSTLLKR_ 0 0 0 ENST00000471347.5_1_1:15654853-15671627:+|nuORF ENST00000471347.5_1_1:15654853-15671627:+|nuORF ENST00000471347.5_1_1:15654853-15671627:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 332.962295 1327.82007 -0.51193 -0.00017045 -0.52882 -0.00017608 -1.0408 -0.00034653 332.9621303025211 15.939 0.20925 15.939 15.814 16.023 0 -0.0053599 9.9217E-05 NaN 0.13989 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1211800 38596 10211 25866 25882 0.16927533361899805 RLWRSTLLKR 10 Unmodified _RLWRSTLLKR_ 0 0 0 ENST00000471347.5_1_1:15654853-15671627:+|nuORF ENST00000471347.5_1_1:15654853-15671627:+|nuORF ENST00000471347.5_1_1:15654853-15671627:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 332.962295 1327.82007 -0.5465 -0.00018197 -0.55236 -0.00018392 -1.0989 -0.00036588 332.96208423964504 17.192 0.2086 15.977 15.845 16.053 -1.2159 0.031833 6.7867E-05 NaN 0.13989 15 5 4 NaN NaN NaN NaN 0 NaN NaN 0 831080 38597 10211 25866 25882 0.16927533361899805 RLWRSTLLKR 10 Unmodified _RLWRSTLLKR_ 0 0 0 ENST00000471347.5_1_1:15654853-15671627:+|nuORF ENST00000471347.5_1_1:15654853-15671627:+|nuORF ENST00000471347.5_1_1:15654853-15671627:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 332.962295 1327.82007 -0.45669 -0.00015206 -0.74569 -0.00024829 -1.2024 -0.00040035 333.21273370168024 17.19 0.31238 15.918 15.696 16.008 -1.2722 -0.026474 -0.00018961 NaN 0.13989 16 8 3 NaN NaN NaN NaN 0 NaN NaN 0 654630 38598 10211 25866 25882 0.16927533361899805 RLWRTRKRRR 10 Unmodified _RLWRTRKRRR_ 0 0 0 ENST00000433071.2_1_21:32931573-32932426:+|nuORF ENST00000433071.2_1_21:32931573-32932426:+|nuORF ENST00000433071.2_1_21:32931573-32932426:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3909912109375 2 742.468901 1482.92325 NaN NaN NaN NaN NaN NaN NaN 163.9 1 159.11 158.61 159.61 -4.7898 0 0 0 2.8426 1 32710 32710 0.0013812 0.0008168 1 38599 9805 25867 25883 37925 37925 0.20110458593057956 RLWSELWP 8 Unmodified _RLWSELWP_ 0 0 0 REV__ARHGEF15|p.T13Rfs*169|2|0.36|ENSG00000198844|chr17:8312070-8312070|C/-|frameshift_variant REV__ARHGEF15|p.T13Rfs*169|2|0.36|ENSG00000198844|chr17:8312070-8312070|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.782470703125 2 543.790184 1085.56581 NaN NaN NaN NaN NaN NaN NaN 46.755 1 46.755 46.255 47.255 0 0 0 0 0.22757 1 8812 8812 0.68139 0.55358 1 + 38600 13111 25868 25884 37926 37926 0.026454665427536384 RLWTARHNA 9 Unmodified _RLWTARHNA_ 0 0 0 ENSG00000166816|ENST00000450168|LDHD;nc|ENSG00000166816|Q86WU2|LDHD ENSG00000166816|ENST00000450168|LDHD ENSG00000166816|ENST00000450168|LDHD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2061462402344 3 375.540579 1123.59991 0.25486 9.571E-05 -1.2494 -0.00046919 -0.9945 -0.00037347 375.54005518997315 21.545 0.14446 20.071 20.016 20.16 -1.4742 6 3 2 0 0 0 0.87609 1 3643 3643 7.609 4.0125 1 255120 38601 5749 25869 25885 37927 37927 0.043053077543845575 RLWTARHNA 9 Unmodified _RLWTARHNA_ 0 0 0 ENSG00000166816|ENST00000450168|LDHD;nc|ENSG00000166816|Q86WU2|LDHD ENSG00000166816|ENST00000450168|LDHD ENSG00000166816|ENST00000450168|LDHD MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.540579 1123.59991 -0.18889 -7.0934E-05 -2.0482 -0.00076919 -2.2371 -0.00084012 375.539869567583 20.025 0.24239 20.025 19.928 20.17 0 -0.022775 -0.00035131 NaN 7.609 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 290140 38602 5749 25869 25885 0.043053077543845575 RLWTEIPTA 9 Unmodified _RLWTEIPTA_ 0 0 0 ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant;ITPR3|p.F799L|1|0.21|ENSG00000096433|chr6:33670530-33670530|T/C|missense_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7841796875 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 125.57 1 120.92 120.42 121.42 -4.6495 0 0 0 0.19657 1 24160 24160 4.897 4.8237 1 38603 1876 25870 25886 37928 37928 0.04757431851612637 RLWWYYDMPHY 11 Unmodified _RLWWYYDMPHY_ 0 0 0 REV__ENSG00000161267|ENST00000392379|BDH1 REV__ENSG00000161267|ENST00000392379|BDH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7839965820312 3 543.915095 1628.72345 NaN NaN NaN NaN NaN NaN NaN 140.65 1 136 135.5 136.5 -4.6493 0 0 0 0.23698 1 27768 27768 0.094841 0 1 + 38604 17452 25871 25887 37929 37929 -0.06575821980186447 RLWWYYDMPHY 11 Unmodified _RLWWYYDMPHY_ 0 0 0 REV__ENSG00000161267|ENST00000392379|BDH1 REV__ENSG00000161267|ENST00000392379|BDH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3658447265625 2 815.369004 1628.72345 NaN NaN NaN NaN NaN NaN NaN 143.46 1 138.56 138.06 139.06 -4.8982 0 0 0 0.22632 1 27690 27690 0.00056442 0.00056442 1 + 38605 17452 25871 25887 37930 37930 -0.06575821980186447 RLYGNPNTL 9 Unmodified _RLYGNPNTL_ 0 0 0 TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6832885742188 2 524.282723 1046.55089 -0.13262 -6.9529E-05 0.6212 0.00032568 0.48858 0.00025616 524.2830063337934 61.358 0.55013 61.358 61.081 61.631 0 35 15 3 0 0 0 0.36034 1 11796 11796 29.082 8.2104 1 3869400 38606 3328 25872 25888 37931 37931 0.02947974674748366 RLYGNPNTL 9 Unmodified _RLYGNPNTL_ 0 0 0 TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.697265625 2 524.282723 1046.55089 -0.13387 -7.0186E-05 0.62352 0.0003269 0.48965 0.00025672 524.2830267873655 64.485 0.66077 61.488 61.153 61.814 -2.9975 32 18 2 0 0 0 0.27865 1 12490 12490 49.933 35.095 1 5228600 38607 3328 25872 25888 37932 37932 0.02947974674748366 RLYGNPNTL 9 Unmodified _RLYGNPNTL_ 0 0 0 TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6998901367188 2 524.282723 1046.55089 -0.27199 -0.0001426 0.78437 0.00041123 0.51238 0.00026863 524.2831174376907 64.946 0.69765 61.488 61.089 61.787 -3.4581 36 19 3 0 0 0 0.47479 1 12123 12123 37.974 37.974 1 3919500 38608 3328 25872 25888 37933 37933 0.02947974674748366 RLYGYFHDA 9 Unmodified _RLYGYFHDA_ 0 0 0 chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA;ENSG00000087586|ENST00000395915|AURKA chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20941162109375 3 381.185691 1140.53524 NaN NaN NaN NaN NaN NaN NaN 74.988 1 71.624 71.124 72.124 -3.3643 0 0 0 0.18489 1 14635 14635 17.113 10.483 1 38609 546 25873 25889 37934 37934 -0.029403118422806074 RLYGYFHDA 9 Unmodified _RLYGYFHDA_ 0 0 0 chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA;ENSG00000087586|ENST00000395915|AURKA chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2106628417969 3 381.185691 1140.53524 0.14421 5.4971E-05 -0.2276 -8.6757E-05 -0.083387 -3.1786E-05 381.5201307051555 75.15 0.27155 71.427 71.308 71.579 -3.7227 11 7 2 0 0 0 0.10537 2 14210 14210;14211 37.075 32.178 1 1392600 38610 546 25873 25889 37935;37936 37935 -0.029403118422806074 RLYGYFHDA 9 Unmodified _RLYGYFHDA_ 0 0 0 chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA;ENSG00000087586|ENST00000395915|AURKA chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.219970703125 3 381.185691 1140.53524 -0.38066 -0.0001451 0.4606 0.00017557 0.07994 3.0472E-05 381.5202473065443 75.097 0.30618 71.503 71.304 71.61 -3.594 14 8 2 0 0 0 0.46796 1 14283 14283 21.59 17.061 1 1033100 38611 546 25873 25889 37937 37937 -0.029403118422806074 RLYNYFYDRRR 11 Unmodified _RLYNYFYDRRR_ 0 0 0 ENST00000584561.1_1_17:8109844-8110310:-|nuORF;nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB ENST00000584561.1_1_17:8109844-8110310:-|nuORF ENST00000584561.1_1_17:8109844-8110310:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2686157226562 3 541.283057 1620.82734 0.39235 0.00021237 0.50644 0.00027413 0.89879 0.0004865 541.6178267200763 161.03 0.14006 156.23 156.14 156.28 -4.7952 5 3 2 0 0 0 0.82392 1 32021 32021 0.45452 0.046251 1 1437600 38612 6600 25874 25890 37938 37938 0.041762211716786624 RLYRQAGV 8 Unmodified _RLYRQAGV_ 0 0 0 nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.Q4263Sfs*13|1|0.12|ENSG00000183914|chr17:7832639-7832639|C/-|frameshift_variant;DNAH2|p.K4326Rfs*84|3|0.27|ENSG00000183914|chr17:7832920-7832920|C/-|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2 nc|ENSG00000183914|Q9P225-2|DNAH2 nc|ENSG00000183914|Q9P225-2|DNAH2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7815856933594 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 164.42 1 159.38 158.88 159.88 -5.0446 0 0 0 0.22934 1 32063 32063 1.7423 1.4908 1 38613 863 25875 25891 37939 37939 0.06343715602804423 RLYSFDVDATL 11 Unmodified _RLYSFDVDATL_ 0 0 0 REV__ENSG00000003509|ENST00000002125|NDUFAF7 REV__ENSG00000003509|ENST00000002125|NDUFAF7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 433.8890686035156 3 433.890832 1298.65067 NaN NaN NaN NaN NaN NaN NaN 147.84 1 142.78 142.28 143.28 -5.0595 0 0 0 0.23689 1 28628 28628 2.8433 0.10809 1 + 38614 13830 25876 25892 37940 37940 0.013287474980415936 RLYSQTLSR 9 Unmodified _RLYSQTLSR_ 0 0 0 REV__nc|ENSG00000110713|P52948-6|NUP98 REV__nc|ENSG00000110713|P52948-6|NUP98 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21258544921875 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 147.73 1 142.67 142.17 143.17 -5.0595 0 0 0 0.19651 1 28604 28604 0.40827 0 1 + 38615 15212 25877 25893 37941 37941 0.05815335111856257 RLYYFTCISLY 11 Unmodified _RLYYFTCISLY_ 0 0 0 ENST00000493021.5_1_2:162567177-162757603:+|nuORF ENST00000493021.5_1_2:162567177-162757603:+|nuORF ENST00000493021.5_1_2:162567177-162757603:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2449035644531 3 481.244329 1440.71116 NaN NaN NaN NaN NaN NaN NaN 101.88 1 97.696 97.196 98.196 -4.1861 0 0 0 0.22632 1 20021 20021 3.0723 0 1 38616 10540 25878 25894 37942 37942 0.00843141556788396 RMADDMLKRG 10 Unmodified _RMADDMLKRG_ 0 0 0 ENSG00000100116|ENST00000248924|GCAT;nc|ENSG00000100116|O75600-2|GCAT ENSG00000100116|ENST00000248924|GCAT ENSG00000100116|ENST00000248924|GCAT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 398.2019958496094 3 398.202359 1191.58525 NaN NaN NaN NaN NaN NaN NaN 54.281 1 51.397 50.897 51.897 -2.8837 0 0 0 0.22588 1 10356 10356 3.5871 0 1 38617 1931 25879 25895 37943 37943 -0.0028826850032146467 RMAPALSGA 9 Unmodified _RMAPALSGA_ 0 0 0 SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENSG00000167978|ENST00000301740|SRRM2;ENST00000574593.1_1_16:2817540-2819884:+|nuORF SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23419189453125 2 437.234187 872.453822 0.47755 0.0002088 -0.46339 -0.00020261 0.014158 6.1903E-06 437.2339183114941 45.592 0.69901 45.592 45.165 45.864 0 47 19 3 0 0 0 0.006766 5 8564 8515;8564;8598;8601;8605 111.29 40.153 1 6345800 38618 5863 25880 25896 37944;37945;37946;37947;37948 37945 0.012492891941064954 RMAPALSGA 9 Unmodified _RMAPALSGA_ 0 0 0 SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENSG00000167978|ENST00000301740|SRRM2;ENST00000574593.1_1_16:2817540-2819884:+|nuORF SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23419189453125 2 437.234187 872.453822 -0.2152 -9.4092E-05 0.23914 0.00010456 0.023936 1.0466E-05 437.2342565752176 48.399 0.67526 45.53 45.125 45.801 -2.869 45 18 3 0 0 0 0.006766 5 9136 9095;9113;9136;9179;9181 111.29 49.93 1 11798000 38619 5863 25880 25896 37949;37950;37951;37952;37953 37951 0.012492891941064954 RMAPALSGA 9 Unmodified _RMAPALSGA_ 0 0 0 SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENSG00000167978|ENST00000301740|SRRM2;ENST00000574593.1_1_16:2817540-2819884:+|nuORF SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2204895019531 2 437.234187 872.453822 -0.023243 -1.0163E-05 0.08083 3.5342E-05 0.057587 2.5179E-05 437.2341846429201 48.479 0.70338 45.487 45.129 45.833 -2.9923 51 19 3 0 0 0 0.01249 5 8832 8801;8828;8832;8844;8884 99.799 38.441 1 10112000 38620 5863 25880 25896 37954;37955;37956;37957;37958 37956 0.012492891941064954 RMAPALSGA 9 Unmodified _RMAPALSGA_ 0 0 0 SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENSG00000167978|ENST00000301740|SRRM2;ENST00000574593.1_1_16:2817540-2819884:+|nuORF SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2342224121094 2 437.234187 872.453822 -0.25817 -0.00011288 0.3566 0.00015592 0.098438 4.304E-05 437.23431427533694 48.462 0.73146 45.512 45.156 45.888 -2.9499 48 20 3 0 0 0 0.00014526 4 8871 8821;8871;8916;8922 123.45 59.214 1 6889700 38621 5863 25880 25896 37959;37960;37961;37962 37960 0.012492891941064954 RMCEDFQDEDH 11 Unmodified _RMCEDFQDEDH_ 0 0 0 ENST00000394318.7_1_17:37224095-37235479:-|nuORF;ENSG00000161381|ENST00000315392|PLXDC1 ENST00000394318.7_1_17:37224095-37235479:-|nuORF ENST00000394318.7_1_17:37224095-37235479:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 712.6482543945312 2 712.763908 1423.51326 NaN NaN NaN NaN NaN NaN NaN 171.82 1 171.82 171.32 172.32 0 0 0 0 0.22632 1 35428 35428 0.094841 0 1 38622 5290 25881 25897 37963 37963 -0.18155272435319603 RMEKRYLEKMW 11 Unmodified _RMEKRYLEKMW_ 0 0 0 REV__ENST00000430935.5_1_7:138875731-138875803:+|nuORF REV__ENST00000430935.5_1_7:138875731-138875803:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4035034179688 2 785.405063 1568.79557 NaN NaN NaN NaN NaN NaN NaN 155 1 155 154.5 155.5 0 0 0 0 0.22632 1 31069 31069 0.50596 0.50539 1 + 38623 21613 25882 25898 37964 37964 0.033927691018561745 RMERVYYRYHP 11 Unmodified _RMERVYYRYHP_ 0 0 0 REV__nc|ENSG00000163636|Q15008-3|PSMD6 REV__nc|ENSG00000163636|Q15008-3|PSMD6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.392333984375 2 785.390802 1568.76705 NaN NaN NaN NaN NaN NaN NaN 116.29 1 111.71 111.21 112.21 -4.5815 0 0 0 0.22632 1 22317 22317 0.00056442 0 1 + 38624 17594 25883 25899 37965 37965 0.00541787516954173 RMERVYYRYHP 11 Unmodified _RMERVYYRYHP_ 0 0 0 REV__nc|ENSG00000163636|Q15008-3|PSMD6 REV__nc|ENSG00000163636|Q15008-3|PSMD6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3897094726562 2 785.390802 1568.76705 NaN NaN NaN NaN NaN NaN NaN 116.64 1 112.06 111.56 112.56 -4.5815 0 0 0 0.23698 1 22380 22380 2.4985 1.3051 1 + 38625 17594 25883 25899 37966 37966 0.00541787516954173 RMERVYYRYHP 11 Unmodified _RMERVYYRYHP_ 0 0 0 REV__nc|ENSG00000163636|Q15008-3|PSMD6 REV__nc|ENSG00000163636|Q15008-3|PSMD6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3921508789062 2 785.390802 1568.76705 NaN NaN NaN NaN NaN NaN NaN 157.44 1 152.17 151.67 152.67 -5.2712 0 0 0 0.22632 1 30541 30541 0.00056442 0 1 + 38626 17594 25883 25899 37967 37967 0.00541787516954173 RMERVYYRYHP 11 Unmodified _RMERVYYRYHP_ 0 0 0 REV__nc|ENSG00000163636|Q15008-3|PSMD6 REV__nc|ENSG00000163636|Q15008-3|PSMD6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3905029296875 2 785.390802 1568.76705 NaN NaN NaN NaN NaN NaN NaN 165.8 1 160.86 160.36 161.36 -4.9484 0 0 0 0.23698 1 32429 32429 1.3295 0.13619 1 + 38627 17594 25883 25899 37968 37968 0.00541787516954173 RMEVENPNY 9 Unmodified _RMEVENPNY_ 0 0 0 nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;nc|ENSG00000138434|P28290-2|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF nc|ENSG00000138434|P28290-3|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3333129882812 2 576.26113 1150.50771 -0.11504 -6.6293E-05 0.19402 0.00011181 0.078984 4.5515E-05 576.2612393670972 49.956 0.52591 47.075 46.798 47.324 -2.8811 22 14 2 0 0 0 0.21532 1 9486 9486 36.506 16.053 1 1708400 38628 4170 25884 25900 37969 37969 -0.061525831648168605 RMEVENPNY 9 Unmodified _RMEVENPNY_ 0 0 0 nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;nc|ENSG00000138434|P28290-2|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF nc|ENSG00000138434|P28290-3|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.333740234375 2 576.26113 1150.50771 0.13986 8.0596E-05 -0.085197 -4.9096E-05 0.054662 3.15E-05 576.2611900907312 50.151 0.78817 47.152 46.548 47.337 -2.999 28 22 2 0 0 0 0.39339 1 9158 9158 36.506 21.668 1 2917800 38629 4170 25884 25900 37970 37970 -0.061525831648168605 RMFHSVREAWY 11 Unmodified _RMFHSVREAWY_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 494.7461853027344 3 494.575072 1480.70339 0.014655 7.2481E-06 1.6335 0.00080789 1.6482 0.00081514 494.90949266271804 131.26 0.099976 126.43 126.38 126.48 -4.8355 4 2 2 0 0 0 0.88733 1 25206 25206 7.0341 5.579 1 560270 38630 5449 25885 25901 37971 37971 -0.017735729200921924 RMGAVGREQPQ 11 Unmodified _RMGAVGREQPQ_ 0 0 0 REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 614.3583374023438 2 614.814396 1227.61424 0.48876 0.0003005 -0.14545 -8.9424E-05 0.34331 0.00021107 614.81418005814 68.98 0.76207 65.589 65.185 65.947 -3.3903 64 21 4 0 0 0 0.94841 1 12971 12971 4.1895 1.4543 1 16864000 + 38631 22211 25886 25902 37972 37972 0.009535921203450926 RMGAVGREQPQ 11 Unmodified _RMGAVGREQPQ_ 0 0 0 REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 614.814396 1227.61424 0.071531 4.3978E-05 -0.0062551 -3.8457E-06 0.065276 4.0133E-05 614.8142999658705 65.396 0.69258 65.396 65.067 65.759 0 -0.16571 0.00026724 NaN 4.1895 48 19 3 NaN NaN NaN NaN 0 NaN NaN 0 20735000 + 38632 22211 25886 25902 0.009535921203450926 RMGAVGREQPQ 11 Unmodified _RMGAVGREQPQ_ 0 0 0 REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 614.814396 1227.61424 0.88165 0.00054205 -0.57498 -0.0003535 0.30667 0.00018855 614.813957363554 68.855 0.73346 65.676 65.276 66.009 -3.1796 0.11403 -0.00043208 NaN 4.1895 61 20 4 NaN NaN NaN NaN 0 NaN NaN 0 24769000 + 38633 22211 25886 25902 0.009535921203450926 RMGAVGREQPQ 11 Unmodified _RMGAVGREQPQ_ 0 0 0 REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 614.814396 1227.61424 0.6303 0.00038752 -0.2337 -0.00014368 0.3966 0.00024384 614.8141853882428 69.122 0.71968 65.585 65.291 66.011 -3.5362 0.023867 -1.2434E-05 NaN 4.1895 58 19 4 NaN NaN NaN NaN 0 NaN NaN 0 19698000 + 38634 22211 25886 25902 0.009535921203450926 RMGQEPGV 8 Unmodified _RMGQEPGV_ 0 0 0 ENST00000471373.5_1_3:170139112-170178121:+|nuORF;ENST00000468358.5_1_3:170139112-170150991:+|nuORF;ENST00000489485.5_1_3:170139112-170150541:+|nuORF;ENST00000486429.1_1_3:170136842-170141147:+|nuORF;ENSG00000013297|ENST00000064724|CLDN11 ENST00000471373.5_1_3:170139112-170178121:+|nuORF ENST00000471373.5_1_3:170139112-170178121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2152404785156 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 130.29 1 125.65 125.15 126.15 -4.6359 0 0 0 0.21486 1 25678 25678 5.7604 0 1 38635 1093 25887 25903 37973 37973 -0.023875877025943737 RMGQEPGV 8 Unmodified _RMGQEPGV_ 0 0 0 ENST00000471373.5_1_3:170139112-170178121:+|nuORF;ENST00000468358.5_1_3:170139112-170150991:+|nuORF;ENST00000489485.5_1_3:170139112-170150541:+|nuORF;ENST00000486429.1_1_3:170136842-170141147:+|nuORF;ENSG00000013297|ENST00000064724|CLDN11 ENST00000471373.5_1_3:170139112-170178121:+|nuORF ENST00000471373.5_1_3:170139112-170178121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2162780761719 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 130.45 1 125.61 125.11 126.11 -4.8355 0 0 0 0.21486 1 25048 25048 5.7604 0 1 38636 1093 25887 25903 37974 37974 -0.023875877025943737 RMGQEPGV 8 Unmodified _RMGQEPGV_ 0 0 0 ENST00000471373.5_1_3:170139112-170178121:+|nuORF;ENST00000468358.5_1_3:170139112-170150991:+|nuORF;ENST00000489485.5_1_3:170139112-170150541:+|nuORF;ENST00000486429.1_1_3:170136842-170141147:+|nuORF;ENSG00000013297|ENST00000064724|CLDN11 ENST00000471373.5_1_3:170139112-170178121:+|nuORF ENST00000471373.5_1_3:170139112-170178121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2162170410156 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 114.01 1 109.69 109.19 110.19 -4.3136 0 0 0 0.21486 1 21957 21957 5.7604 0 1 38637 1093 25887 25903 37975 37975 -0.023875877025943737 RMGRRHHH 8 Unmodified _RMGRRHHH_ 0 0 0 REV__ENST00000423302.6_2_11:10648111-10649536:-|nuORF REV__ENST00000423302.6_2_11:10648111-10649536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7816162109375 2 543.783567 1085.55258 NaN NaN NaN NaN NaN NaN NaN 9.4174 1 8.3828 7.8828 8.8828 -1.0347 0 0 0 0.21486 1 958 958 0 0 1 + 38638 21532 25888 25904 37976 37976 0.013227500023958783 RMGVWHTWRRV 11 Unmodified _RMGVWHTWRRV_ 0 0 0 REV__ENST00000478189.1_1_6:33049883-33051411:+|nuORF REV__ENST00000478189.1_1_6:33049883-33051411:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3931274414062 2 742.396222 1482.77789 NaN NaN NaN NaN NaN NaN NaN 93.812 1 93.812 93.312 94.312 0 0 0 0 0.22632 1 18364 18364 0.00056442 0 1 + 38639 22137 25889 25905 37977 37977 0.05581234681858405 RMIIDGLV 8 Unmodified _RMIIDGLV_ 0 0 0 REV__chr1:119794685-119799725|262|21.08|0.25|6.41|-|ENST00000530654|REG4,REG4 REV__chr1:119794685-119799725|262|21.08|0.25|6.41|-|ENST00000530654|REG4,REG4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.2069396972656 3 306.181001 915.521173 NaN NaN NaN NaN NaN NaN NaN 67.924 1 64.597 64.097 65.097 -3.3268 0 0 0 0.21486 1 12816 12816 1.6526 0 1 + 38640 13410 25890 25906 37978 37978 0.06003319405056118 RMILDPNG 8 Unmodified _RMILDPNG_ 0 0 0 REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5 REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386779785156 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 80.074 1 80.074 79.574 80.574 0 0 0 0 0.20462 1 15588 15588 21.747 0 1 + 38641 15526 25891 25907 37979 37979 0.003732718485366604 RMILDPNG 8 Unmodified _RMILDPNG_ 0 0 0 REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5 REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2381286621094 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 80.411 1 80.411 79.911 80.911 0 0 0 0 0.20462 1 15655 15655 21.747 7.165 1 + 38642 15526 25891 25907 37980 37980 0.003732718485366604 RMILDPNG 8 Unmodified _RMILDPNG_ 0 0 0 REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5 REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2377014160156 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 83.524 1 79.916 79.416 80.416 -3.6079 0 0 0 0.20462 1 16327 16327 21.747 0 1 + 38643 15526 25891 25907 37981 37981 0.003732718485366604 RMILDPNG 8 Unmodified _RMILDPNG_ 0 0 0 REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5 REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23828125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 83.991 1 80.082 79.582 80.582 -3.9093 0 0 0 0.18898 1 15962 15962 28.487 6.7402 1 + 38644 15526 25891 25907 37982 37982 0.003732718485366604 RMILDPNG 8 Unmodified _RMILDPNG_ 0 0 0 REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5 REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23822021484375 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 83.995 1 80.283 79.783 80.783 -3.7117 0 0 0 0.18898 1 16041 16041 28.487 3.813 1 + 38645 15526 25891 25907 37983 37983 0.003732718485366604 RMKDRLSPEK 10 Unmodified _RMKDRLSPEK_ 0 0 0 REV__ENSG00000163535|ENST00000357799|SGO2 REV__ENSG00000163535|ENST00000357799|SGO2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7562255859375 2 630.348071 1258.68159 NaN NaN NaN NaN NaN NaN NaN 39.712 1 39.712 39.212 40.212 0 0 0 0 2.8426 1 7376 7376 0.26539 0 1 + 38646 17583 25892 25908 37984 37984 0.06259622331299397 RMKKKKKKK 9 Unmodified _RMKKKKKKK_ 0 0 0 REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2879028320312 2 601.915727 1201.8169 NaN NaN NaN NaN NaN NaN NaN 94.602 1 90.611 90.111 91.111 -3.9907 0 0 0 0.19635 1 18540 18540 0 0 1 + 38647 20923 25893 25909 37985 37985 0.22406566983545417 RMKKKKKLLPF 11 Unmodified _RMKKKKKLLPF_ 0 0 0 ENST00000417638.1_1_9:12790708-12814310:-|nuORF ENST00000417638.1_1_9:12790708-12814310:-|nuORF ENST00000417638.1_1_9:12790708-12814310:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 708.9655151367188 2 708.965417 1415.91628 NaN NaN NaN NaN NaN NaN NaN 177.3 1 172.51 172.01 173.01 -4.7898 0 0 0 0.22632 1 36263 36263 0 0 1 38648 9632 25894 25910 37986 37986 0.22495964877680308 RMKKRKHKLRR 11 Unmodified _RMKKRKHKLRR_ 0 0 0 REV__ENST00000451383.1_1_2:67108241-67108316:-|nuORF REV__ENST00000451383.1_1_2:67108241-67108316:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 768.9964599609375 2 768.996437 1535.97832 NaN NaN NaN NaN NaN NaN NaN 167.81 1 163.02 162.52 163.52 -4.7898 0 0 0 0.23698 1 33884 33884 0 0 1 + 38649 21805 25895 25911 37987 37987 0.2317712906935867 RMKKTLII 8 Unmodified _RMKKTLII_ 0 0 0 REV__tr|U7SIN9|U7SIN9_FUSNUV-typeprotonATPasesubunitEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpEPE=3SV=1 REV__tr|U7SIN9|U7SIN9_FUSNUV-typeprotonATPasesubunitEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpEPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.90625 3 334.887929 1001.64196 -0.93188 -0.00031208 1.6926 0.00056684 0.76073 0.00025476 335.22192415851987 9.4218 0.82882 8.6275 8.4253 9.2542 -0.79424 28 23 2 0 0 0 1.0282 1 1068 1068 0 0 1 267680 + 38650 24890 25896 25912 37988 37988 0.1412014711855818 RMKMFFWEYQR 11 Unmodified _RMKMFFWEYQR_ 0 0 0 REV__ENSG00000175874|ENST00000324768|CREG2 REV__ENSG00000175874|ENST00000324768|CREG2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3912353515625 2 811.391956 1620.76936 NaN NaN NaN NaN NaN NaN NaN 103.94 1 103.94 103.44 104.44 0 0 0 0 0.23698 1 20430 20430 0.30703 0 1 + 38651 18490 25897 25913 37989 37989 -0.016195000695688577 RMKMFFWEYQR 11 Unmodified _RMKMFFWEYQR_ 0 0 0 REV__ENSG00000175874|ENST00000324768|CREG2 REV__ENSG00000175874|ENST00000324768|CREG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2648315429688 3 541.263729 1620.76936 NaN NaN NaN NaN NaN NaN NaN 109.27 1 105.08 104.58 105.58 -4.1826 0 0 0 0.22632 1 21028 21028 3.0723 1.6171 1 + 38652 18490 25897 25913 37990 37990 -0.016195000695688577 RMLIKKKKKT 10 Unmodified _RMLIKKKKKT_ 0 0 0 REV__nc|ENSG00000138193|Q9P212-2|PLCE1 REV__nc|ENSG00000138193|Q9P212-2|PLCE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2364501953125 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 160.17 1 155.37 154.87 155.87 -4.7952 0 0 0 0.22588 1 31849 31849 0.13989 0.04505 1 + 38653 16447 25898 25914 37991 37991 0.2172741643516929 RMLIKKKKKT 10 Unmodified _RMLIKKKKKT_ 0 0 0 REV__nc|ENSG00000138193|Q9P212-2|PLCE1 REV__nc|ENSG00000138193|Q9P212-2|PLCE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2415771484375 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 134.74 1 129.93 129.43 130.43 -4.8175 0 0 0 2.8426 1 25940 25940 0.13989 0.13989 1 + 38654 16447 25898 25914 37992 37992 0.2172741643516929 RMLLLLHCFP 10 Unmodified _RMLLLLHCFP_ 0 0 0 ENST00000509376.5_1_4:52779756-52779993:+|nuORF ENST00000509376.5_1_4:52779756-52779993:+|nuORF ENST00000509376.5_1_4:52779756-52779993:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 621.8461303710938 2 621.846122 1241.67769 NaN NaN NaN NaN NaN NaN NaN 11.162 1 10.258 9.7584 10.758 -0.90401 0 0 0 0.22588 1 1457 1457 0 0 1 38655 10731 25899 25915 37993 37993 0.06651861303885198 RMLLQQLIL 9 Unmodified _RMLLQQLIL_ 0 0 0 REV__nc|ENSG00000030066|Q12769|NUP160 REV__nc|ENSG00000030066|Q12769|NUP160 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.5016174316406 3 376.570488 1126.68964 NaN NaN NaN NaN NaN NaN NaN 12.672 1 11.662 11.162 12.162 -1.0098 0 0 0 0.19623 1 1781 1781 0.0033805 0 1 + 38656 14013 25900 25916 37994 37994 0.13135801318730955 RMLPHAPGV 9 Unmodified _RMLPHAPGV_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2735900878906 2 489.271104 976.527655 0.029239 1.4306E-05 -0.084027 -4.1112E-05 -0.054788 -2.6806E-05 489.2710878461137 56.1 1.2602 56.1 55.656 56.916 0 90 35 5 0 0 0 0.085258 3 10719 10673;10719;10760 60.39 60.39 1 68946000 38657 7288 25901 25917 37995;37996;37997 37996 0.03845257356431375 RMLPHAPGV 9 Unmodified _RMLPHAPGV_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2736511230469 2 489.271104 976.527655 0.065866 3.2227E-05 -0.12984 -6.3527E-05 -0.063973 -3.13E-05 489.27107435611765 59.022 1.5064 56.112 55.372 56.878 -2.9105 98 42 4 0 0 0 0.085258 2 11355 11304;11355 60.39 60.39 1 92481000 38658 7288 25901 25917 37998;37999 37999 0.03845257356431375 RMLPHAPGV 9 Unmodified _RMLPHAPGV_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2735290527344 2 489.271104 976.527655 0.2023 9.8982E-05 -0.30315 -0.00014832 -0.10085 -4.9342E-05 489.2710018895048 59.427 1.5491 56.113 55.321 56.87 -3.3139 101 43 4 0 0 0 0.050517 2 11045 11006;11045 70.716 40.079 1 97914000 38659 7288 25901 25917 38000;38001 38001 0.03845257356431375 RMLPHAPGV 9 Unmodified _RMLPHAPGV_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2737121582031 2 489.271104 976.527655 -0.1318 -6.4487E-05 0.14161 6.9287E-05 0.0098087 4.7991E-06 489.2712007972878 59.35 1.6821 56.126 55.416 57.098 -3.2237 104 47 4 0 0 0 0.085258 2 11086 11035;11086 60.39 43.447 1 73693000 38660 7288 25901 25917 38002;38003 38003 0.03845257356431375 RMRKKRWKARM 11 Unmodified _RMRKKRWKARM_ 0 0 0 REV__ENST00000451383.1_1_2:67108241-67108316:-|nuORF REV__ENST00000451383.1_1_2:67108241-67108316:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1643371582031 5 310.186735 1545.89729 -0.93155 -0.00028895 0.3946 0.0001224 -0.53695 -0.00016655 310.18676126476015 12.781 0.24181 11.772 11.625 11.866 -1.0098 8 6 2 0 0 0 0.66313 2 1793 1793;1794 0 0 1 316480 + 38661 21805 25902 25918 38004;38005 38004 0.1461810503496963 RMRLLLLPP 9 Unmodified _RMRLLLLPP_ 0 0 0 ENST00000299413.6_1_11:35684754-35684874:+|nuORF ENST00000299413.6_1_11:35684754-35684874:+|nuORF ENST00000299413.6_1_11:35684754-35684874:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 554.839111328125 2 554.854804 1107.69505 NaN NaN NaN NaN NaN NaN NaN 9.9277 1 8.8657 8.3657 9.3657 -1.0621 0 0 0 0.23508 1 1043 1043 0 0 1 38662 8536 25903 25919 38006 38006 0.14551524901207813 RMRVLSKA 8 Unmodified _RMRVLSKA_ 0 0 0 TCF21|p.R89G|1|0.36|ENSG00000118526|chr6:133889662-133889662|C/G|missense_variant;MSC|p.R117H|1|0.2|ENSG00000178860|chr8:71843829-71843829|C/T|missense_variant;ENSG00000118526|ENST00000367882|TCF21;ENSG00000178860|ENST00000325509|MSC TCF21|p.R89G|1|0.36|ENSG00000118526|chr6:133889662-133889662|C/G|missense_variant TCF21|p.R89G|1|0.36|ENSG00000118526|chr6:133889662-133889662|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24365234375 2 480.792204 959.569854 NaN NaN NaN NaN NaN NaN NaN 51.891 1 51.891 51.391 52.391 0 0 0 0 0.21486 1 9857 9857 6.2058 0.97511 1 38663 3043 25904 25920 38007 38007 0.08845232764815592 RMSAPPVGF 9 Unmodified _RMSAPPVGF_ 0 0 0 REV__nc|ENSG00000136986|Q9BUN8-2|DERL1 REV__nc|ENSG00000136986|Q9BUN8-2|DERL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24951171875 2 481.249837 960.485122 NaN NaN NaN NaN NaN NaN NaN 113.25 1 113.25 112.75 113.75 0 0 0 0 0.23508 1 22266 22266 9.3474 0 1 + 38664 16368 25905 25921 38008 38008 0.003298622282159158 RMSGHAVSA 9 Unmodified _RMSGHAVSA_ 0 0 0 TCTN2|p.P39H|1|0.08|ENSG00000168778|chr12:123671540-123671540|C/A|missense_variant TCTN2|p.P39H|1|0.08|ENSG00000168778|chr12:123671540-123671540|C/A|missense_variant TCTN2|p.P39H|1|0.08|ENSG00000168778|chr12:123671540-123671540|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22412109375 2 458.226894 914.439234 NaN NaN NaN NaN NaN NaN NaN 26.973 1 25.051 24.551 25.551 -1.9222 0 0 0 0.23508 1 4487 4487 12.532 0.89125 1 38665 25831 25906 25922 38009 38009 -0.0214078295401805 RMSPLFLFL 9 Unmodified _RMSPLFLFL_ 0 0 0 REV__ENSG00000177108|ENST00000319374|ZDHHC22 REV__ENSG00000177108|ENST00000319374|ZDHHC22 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2166442871094 3 375.215934 1122.62597 NaN NaN NaN NaN NaN NaN NaN 175.35 1 170.46 169.96 170.96 -4.8845 0 0 0 0.19657 1 34873 34873 0.073264 0 1 + 38666 18541 25907 25923 38010 38010 0.06956440881617709 RMSPLFLFL 9 Unmodified _RMSPLFLFL_ 0 0 0 REV__ENSG00000177108|ENST00000319374|ZDHHC22 REV__ENSG00000177108|ENST00000319374|ZDHHC22 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2163391113281 3 375.215934 1122.62597 NaN NaN NaN NaN NaN NaN NaN 98.152 1 94.196 93.696 94.696 -3.9564 0 0 0 0.19636 1 18839 18839 0.0033805 0 1 + 38667 18541 25907 25923 38011 38011 0.06956440881617709 RMSPLFLFL 9 Unmodified _RMSPLFLFL_ 0 0 0 REV__ENSG00000177108|ENST00000319374|ZDHHC22 REV__ENSG00000177108|ENST00000319374|ZDHHC22 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21612548828125 3 375.215934 1122.62597 NaN NaN NaN NaN NaN NaN NaN 120.68 1 116.22 115.72 116.72 -4.467 0 0 0 0.19636 1 23236 23236 0.029283 0.025902 1 + 38668 18541 25907 25923 38012 38012 0.06956440881617709 RMSQLFHR 8 Unmodified _RMSQLFHR_ 0 0 0 ENST00000479037.5_1_2:230672327-230744801:-|nuORF;TRIP12|p.N880Kfs*36|1|0.21|ENSG00000153827|chr2:229804013-229804014|-/T|frameshift_variant;TRIP12|p.S1195Lfs*24|6|0.27|ENSG00000153827|chr2:229796599-229796599|A/-|frameshift_variant;TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12 ENST00000479037.5_1_2:230672327-230744801:-|nuORF ENST00000479037.5_1_2:230672327-230744801:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 358.90008544921875 3 358.859032 1073.55527 NaN NaN NaN NaN NaN NaN NaN 30.283 1 28.167 27.667 28.667 -2.1167 0 0 0 0.21486 1 5464 5464 3.5965 0 1 38669 4981 25908 25924 38013 38013 0.021431606166743222 RMSSALESV 9 Unmodified _RMSSALESV_ 0 0 0 nc|ENSG00000162772|P18847-4|ATF3;nc|ENSG00000162772|P18847-2|ATF3;nc|ENSG00000162772|P18847-3|ATF3;ENST00000465155.5_1_1:212782186-212791588:+|nuORF;ENSG00000162772|ENST00000341491|ATF3 nc|ENSG00000162772|P18847-4|ATF3 nc|ENSG00000162772|P18847-4|ATF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25750732421875 2 490.247492 978.48043 -0.11792 -5.7812E-05 -1.6134 -0.00079096 -1.7313 -0.00084877 490.24712092906657 60.611 0.66544 60.611 60.28 60.946 0 58 18 4 0 0 0 0.15889 1 11646 11646 22.736 10.496 1 8327600 38670 5367 25909 25925 38014 38014 -0.009670667051977944 RMTAKLRS 8 Unmodified _RMTAKLRS_ 0 0 0 REV__ENST00000436103.1_22:24376175-24376421:-|nuORF REV__ENST00000436103.1_22:24376175-24376421:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78240966796875 2 481.781836 961.549119 NaN NaN NaN NaN NaN NaN NaN 129.52 1 124.78 124.28 125.28 -4.7408 0 0 0 0.23626 1 24925 24925 0.68139 0.42991 1 + 38671 21666 25910 25926 38015 38015 0.06680642385163083 RMTRRSLPGE 10 Unmodified _RMTRRSLPGE_ 0 0 0 NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant;ENSG00000134250|ENST00000256646|NOTCH2;ENST00000493703.1_1_1:120465142-120466525:-|nuORF;NOTCH2|p.V1697Gfs*9|1|0.37|ENSG00000134250|chr1:119922359-119922360|-/C|frameshift_variant NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.296875 2 601.824763 1201.63497 NaN NaN NaN NaN NaN NaN NaN 126.56 1 121.86 121.36 122.36 -4.6998 0 0 0 0.22588 1 24341 24341 4.897 0 1 38672 3836 25911 25927 38016 38016 0.04222182500006966 RMTWRHSRPRT 11 Unmodified _RMTWRHSRPRT_ 0 0 0 ENST00000480830.5_1_22:40803060-40803333:+|nuORF ENST00000480830.5_1_22:40803060-40803333:+|nuORF ENST00000480830.5_1_22:40803060-40803333:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3929443359375 2 742.39421 1482.77387 NaN NaN NaN NaN NaN NaN NaN 171.32 1 171.32 170.82 171.82 0 0 0 0 0.22632 1 35287 35287 2.732 2.0739 1 38673 10363 25912 25928 38017 38017 0.0517914518818543 RMVWPPPP 8 Unmodified _RMVWPPPP_ 0 0 0 ENST00000512062.5_1_16:69497047-69497263:+|nuORF ENST00000512062.5_1_16:69497047-69497263:+|nuORF ENST00000512062.5_1_16:69497047-69497263:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26165771484375 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 123.1 1 118.37 117.87 118.87 -4.731 0 0 0 0.23294 1 23645 23645 1.7423 0.52744 1 38674 10753 25913 25929 38018 38018 0.02082756470485947 RMWATQGLAVA 11 Unmodified _RMWATQGLAVA_ 0 0 0 MANF|p.E149Rfs*16|1|0.3|ENSG00000145050|chr3:51388980-51388980|G/-|frameshift_variant;ENSG00000145050|ENST00000528157|MANF MANF|p.E149Rfs*16|1|0.3|ENSG00000145050|chr3:51388980-51388980|G/-|frameshift_variant MANF|p.E149Rfs*16|1|0.3|ENSG00000145050|chr3:51388980-51388980|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2755737304688 2 602.318783 1202.62301 1.2921 0.00077823 -1.3167 -0.00079306 -0.024629 -1.4834E-05 602.3177634694025 120.27 0.34426 115.75 115.5 115.85 -4.5221 16 9 2 0 0 0 0.74078 1 23665 23665 8.9762 1.3673 1 1427900 38675 4591 25914 25930 38019 38019 0.02980565756820397 RMWCGCMC 8 Unmodified _RMWCGCMC_ 0 0 0 REV__ENST00000302327.3_1_4:184426184-184426352:+|nuORF REV__ENST00000302327.3_1_4:184426184-184426352:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 495.156494140625 2 495.167764 988.320975 NaN NaN NaN NaN NaN NaN NaN 14.831 1 13.717 13.217 14.217 -1.1142 0 0 0 0.23749 1 2250 2250 0.30703 0 1 + 38676 20412 25915 25931 38020 38020 -0.17365261121710773 RMWCGCMC 8 Unmodified _RMWCGCMC_ 0 0 0 REV__ENST00000302327.3_1_4:184426184-184426352:+|nuORF REV__ENST00000302327.3_1_4:184426184-184426352:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 495.1667785644531 2 495.167764 988.320975 NaN NaN NaN NaN NaN NaN NaN 15.177 1 14.063 13.563 14.563 -1.1142 0 0 0 0.23749 1 2326 2326 0.30703 0.29875 1 + 38677 20412 25915 25931 38021 38021 -0.17365261121710773 RMWEDPMGA 9 Unmodified _RMWEDPMGA_ 0 0 0 nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF nc|ENSG00000011243|Q9ULX6-2|AKAP8L nc|ENSG00000011243|Q9ULX6-2|AKAP8L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7664794921875 2 546.733694 1091.45284 0.55957 0.00030594 -0.6542 -0.00035767 -0.09463 -5.1737E-05 546.7334569524031 99.252 1.0766 99.252 98.613 99.69 0 74 30 3 0 0 0 0.25183 2 19417 19403;19417 34.402 20.894 1 8980600 38678 1072 25916 25932 38022;38023 38023 -0.08923293237080543 RMWEDPMGA 9 Unmodified _RMWEDPMGA_ 0 0 0 nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF nc|ENSG00000011243|Q9ULX6-2|AKAP8L nc|ENSG00000011243|Q9ULX6-2|AKAP8L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.771728515625 2 546.733694 1091.45284 0.051998 2.8429E-05 -0.35509 -0.00019414 -0.30309 -0.00016571 546.7337779931944 103.89 1.0194 99.675 99.111 100.13 -4.2183 91 29 4 0 0 0 0.11219 2 20470 20470;20476 51.63 39.098 1 18807000 38679 1072 25916 25932 38024;38025 38024 -0.08923293237080543 RMWEDPMGA 9 Unmodified _RMWEDPMGA_ 0 0 0 nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF nc|ENSG00000011243|Q9ULX6-2|AKAP8L nc|ENSG00000011243|Q9ULX6-2|AKAP8L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.733694 1091.45284 0.22839 0.00012487 -0.59408 -0.00032481 -0.36569 -0.00019994 546.7336319300116 103.85 0.97173 99.505 99.001 99.973 -4.346 -0.06652 6.5201E-05 NaN 51.63 87 27 4 NaN NaN NaN NaN 0 NaN NaN 0 18371000 38680 1072 25916 25932 -0.08923293237080543 RMWEDPMGA 9 Unmodified _RMWEDPMGA_ 0 0 0 nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF nc|ENSG00000011243|Q9ULX6-2|AKAP8L nc|ENSG00000011243|Q9ULX6-2|AKAP8L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.733694 1091.45284 0.71071 0.00038857 -1.0151 -0.00055499 -0.30439 -0.00016642 546.733386565318 103.59 0.98556 99.535 98.997 99.983 -4.0543 -0.036908 -0.00039517 NaN 51.63 81 27 4 NaN NaN NaN NaN 0 NaN NaN 0 11251000 38681 1072 25916 25932 -0.08923293237080543 RMWYLQSCLRK 11 Unmodified _RMWYLQSCLRK_ 0 0 0 POLQ|p.Y2285Ifs*7|1|0.44|ENSG00000051341|chr3:121467633-121467633|A/-|frameshift_variant;POLQ|p.H2496Tfs*59|1|0.11|ENSG00000051341|chr3:121436179-121436179|G/-|frameshift_variant;ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ POLQ|p.Y2285Ifs*7|1|0.44|ENSG00000051341|chr3:121467633-121467633|A/-|frameshift_variant POLQ|p.Y2285Ifs*7|1|0.44|ENSG00000051341|chr3:121467633-121467633|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3871459960938 2 742.386674 1482.75879 NaN NaN NaN NaN NaN NaN NaN 52.14 1 52.14 51.64 52.64 0 0 0 0 0.23698 1 9906 9906 2.7352 1.5419 1 38682 1248 25917 25933 38026 38026 0.036725172759815905 RNAMNKVF 8 Unmodified _RNAMNKVF_ 0 0 0 ENST00000600178.5_1_19:39307991-39322412:-|nuORF;ENST00000597089.5_1_19:39321634-39322007:-|nuORF;ENST00000598707.5_1_19:39306922-39322412:-|nuORF;ENSG00000104823|ENST00000221418|ECH1 ENST00000600178.5_1_19:39307991-39322412:-|nuORF ENST00000600178.5_1_19:39307991-39322412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2591552734375 2 490.260736 978.50692 NaN NaN NaN NaN NaN NaN NaN 87.207 1 83.257 82.757 83.757 -3.9503 0 0 0 0.23312 1 16609 16609 6.2058 1.3088 1 38683 11699 25918 25934 38027 38027 0.016806669767788662 RNDFCKVLA 9 Unmodified _RNDFCKVLA_ 0 0 0 ENST00000531879.5_1_11:46367016-46400221:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF ENST00000531879.5_1_11:46367016-46400221:+|nuORF ENST00000531879.5_1_11:46367016-46400221:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2769775390625 2 533.279126 1064.5437 NaN NaN NaN NaN NaN NaN NaN 168.6 1 163.67 163.17 164.17 -4.9295 0 0 0 0.19669 1 33246 33246 0.12781 0.12443 1 38684 10973 25919 25935 38028 38028 0.014009188026875563 RNFRRPRRS 9 Unmodified _RNFRRPRRS_ 0 0 0 ENST00000549009.1_1_12:110574622-110600787:+|nuORF ENST00000549009.1_1_12:110574622-110600787:+|nuORF ENST00000549009.1_1_12:110574622-110600787:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7615966796875 2 622.863403 1243.71225 NaN NaN NaN NaN NaN NaN NaN 57.966 1 54.76 54.26 55.26 -3.2052 0 0 0 0.19624 1 10811 10811 0 0 1 38685 11156 25920 25936 38029 38029 0.10014581551217816 RNGKKKPPKGK 11 Unmodified _RNGKKKPPKGK_ 0 0 0 ENST00000405709.6_1_7:110303569-110303653:-|nuORF ENST00000405709.6_1_7:110303569-110303653:-|nuORF ENST00000405709.6_1_7:110303569-110303653:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 413.26611328125 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 156.8 1 156.8 156.3 157.3 0 0 0 0 0.23698 1 31461 31461 1.2148 0.14337 1 38686 9534 25921 25937 38030 38030 0.16895557953512252 RNHFAVPD 8 Unmodified _RNHFAVPD_ 0 0 0 ENST00000428278.6_2_8:37963488-37963584:+|nuORF ENST00000428278.6_2_8:37963488-37963584:+|nuORF ENST00000428278.6_2_8:37963488-37963584:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7419128417969 2 478.240858 954.467164 -0.05915 -2.8288E-05 -1.6296 -0.00077933 -1.6887 -0.00080762 478.24005041487305 31.385 0.49057 31.385 31.144 31.635 0 18 13 2 0 0 0 0.73426 1 5680 5680 9.3474 0.75416 1 1073200 38687 9749 25922 25938 38031 38031 -0.011891367022940358 RNKEDIRRSYG 11 Unmodified _RNKEDIRRSYG_ 0 0 0 REV__tr|U7SV58|U7SV58_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01137PE=3SV=1 REV__tr|U7SV58|U7SV58_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01137PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2486267089844 3 465.248013 1392.72221 NaN NaN NaN NaN NaN NaN NaN 141.12 1 136.13 135.63 136.63 -4.9877 0 0 0 0.22632 1 27172 27172 0.65807 0.62666 1 + 38688 25186 25923 25939 38032 38032 0.04155679975269777 RNKLSSIV 8 Unmodified _RNKLSSIV_ 0 0 0 REV__ENST00000473039.5_1_9:126143713-126520026:-|nuORF REV__ENST00000473039.5_1_9:126143713-126520026:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.1910705566406 3 306.190665 915.550165 NaN NaN NaN NaN NaN NaN NaN 136.14 1 131.31 130.81 131.81 -4.8307 0 0 0 0.21486 1 26213 26213 1.6526 0 1 + 38689 15582 25924 25940 38033 38033 0.08901180025725353 RNKNPHPG 8 Unmodified _RNKNPHPG_ 0 0 0 ENST00000380785.5_1_X:10588403-10851715:-|nuORF ENST00000380785.5_1_X:10588403-10851715:-|nuORF ENST00000380785.5_1_X:10588403-10851715:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2471923828125 2 460.246475 918.478397 NaN NaN NaN NaN NaN NaN NaN 89.17 1 89.17 88.67 89.67 0 0 0 0 0.21323 1 17411 17411 14.582 2.0501 1 38690 9322 25925 25941 38034 38034 0.015896853918548004 RNKRGREY 8 Unmodified _RNKRGREY_ 0 0 0 nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1 nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20147705078125 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 121.86 1 121.86 121.36 122.36 0 0 0 0 0.21486 1 24021 24021 3.5965 1.098 1 38691 1692 25926 25942 38035 38035 0.043487173747280394 RNKYEDEINK 10 Unmodified _RNKYEDEINK_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22467041015625 3 436.889603 1307.64698 0.33129 0.00014474 0.12247 5.3505E-05 0.45376 0.00019824 436.88968402259513 21.416 0.85162 19.942 19.597 20.448 -1.4742 34 23 3 0 0 0 0.23435 1 3609 3609 42.068 26.529 1 735810 + 38692 5847 25927 25943 38036 38036 0.005460777241751202 RNLLHDNEL 9 Unmodified _RNLLHDNEL_ 0 0 0 nc|ENSG00000138376|Q99728-4|BARD1;BARD1|p.K208Rfs*4|3|0.24|ENSG00000138376|chr2:214781251-214781251|T/-|frameshift_variant;BARD1|p.D172Mfs*40|2|0.14|ENSG00000138376|chr2:214781361-214781361|T/-|frameshift_variant;BARD1|p.N306Ifs*11|1|0.11|ENSG00000138376|chr2:214780957-214780957|T/-|frameshift_variant;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1 nc|ENSG00000138376|Q99728-4|BARD1 nc|ENSG00000138376|Q99728-4|BARD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2142333984375 3 375.2 1122.57817 0.15115 5.671E-05 0.26696 0.00010016 0.41811 0.00015687 375.2003904036468 62.819 0.78142 59.403 59.122 59.903 -3.4158 32 21 3 0 0 0 0.37634 1 11724 11724 27.223 7.8613 1 1600200 38693 298 25928 25944 38037 38037 0.02178458215144019 RNLLHDNEL 9 Unmodified _RNLLHDNEL_ 0 0 0 nc|ENSG00000138376|Q99728-4|BARD1;BARD1|p.K208Rfs*4|3|0.24|ENSG00000138376|chr2:214781251-214781251|T/-|frameshift_variant;BARD1|p.D172Mfs*40|2|0.14|ENSG00000138376|chr2:214781361-214781361|T/-|frameshift_variant;BARD1|p.N306Ifs*11|1|0.11|ENSG00000138376|chr2:214780957-214780957|T/-|frameshift_variant;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1 nc|ENSG00000138376|Q99728-4|BARD1 nc|ENSG00000138376|Q99728-4|BARD1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.2 1122.57817 -0.46617 -0.00017491 0.60488 0.00022695 0.13872 5.2047E-05 375.20025278161563 59.537 0.61069 59.537 59.284 59.895 0 0.13367 0.00028554 NaN 27.223 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1742400 38694 298 25928 25944 0.02178458215144019 RNLLHDNEL 9 Unmodified _RNLLHDNEL_ 0 0 0 nc|ENSG00000138376|Q99728-4|BARD1;BARD1|p.K208Rfs*4|3|0.24|ENSG00000138376|chr2:214781251-214781251|T/-|frameshift_variant;BARD1|p.D172Mfs*40|2|0.14|ENSG00000138376|chr2:214781361-214781361|T/-|frameshift_variant;BARD1|p.N306Ifs*11|1|0.11|ENSG00000138376|chr2:214780957-214780957|T/-|frameshift_variant;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1 nc|ENSG00000138376|Q99728-4|BARD1 nc|ENSG00000138376|Q99728-4|BARD1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.2 1122.57817 -0.17201 -6.4538E-05 0.030342 1.1384E-05 -0.14167 -5.3154E-05 375.19999215566776 62.297 0.66642 59.336 58.974 59.641 -2.9614 -0.067347 -0.00036117 NaN 27.223 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1903800 38695 298 25928 25944 0.02178458215144019 RNLVSPAY 8 Unmodified _RNLVSPAY_ 0 0 0 ENSG00000086712|ENST00000380122|TXLNG ENSG00000086712|ENST00000380122|TXLNG ENSG00000086712|ENST00000380122|TXLNG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2357177734375 2 460.253434 918.492316 -0.014785 -6.805E-06 0.28388 0.00013066 0.2691 0.00012385 460.25366488748216 62.832 0.6299 59.871 59.357 59.987 -2.9614 24 17 2 0 0 0 0.36038 1 12095 12095 34.102 14.845 1 1108900 38696 1700 25929 25945 38038 38038 0.02980918100274721 RNLVSPAY 8 Unmodified _RNLVSPAY_ 0 0 0 ENSG00000086712|ENST00000380122|TXLNG ENSG00000086712|ENST00000380122|TXLNG ENSG00000086712|ENST00000380122|TXLNG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2449035644531 2 460.253434 918.492316 0.11309 5.2052E-05 0.17133 7.8857E-05 0.28443 0.00013091 460.2535391297417 63.214 0.57687 59.799 59.468 60.045 -3.4158 22 15 2 0 0 0 0.68128 1 11765 11765 16.942 1.0951 1 989400 38697 1700 25929 25945 38039 38039 0.02980918100274721 RNNQFFRYKDF 11 Unmodified _RNNQFFRYKDF_ 0 0 0 ENSG00000186526|ENST00000612078|CYP4F8 ENSG00000186526|ENST00000612078|CYP4F8 ENSG00000186526|ENST00000612078|CYP4F8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.2391967773438 3 512.256508 1533.7477 NaN NaN NaN NaN NaN NaN NaN 136.54 1 136.54 136.04 137.04 0 0 0 0 0.22632 1 27060 27060 0.58532 0.55911 1 38698 7065 25930 25946 38040 38040 0.0021715449768180406 RNPLRAVH 8 Unmodified _RNPLRAVH_ 0 0 0 REV__WDR41|p.N368*|1|0.3|ENSG00000164253|chr5:77436386-77436387|-/A|frameshift_variant;REV__ENST00000502528.5_1_5:76728962-76747206:-|nuORF REV__ENST00000502528.5_1_5:76728962-76747206:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78460693359375 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 13.139 1 13.139 12.639 13.639 0 0 0 0 0.21486 1 1877 1877 2.3027 0 1 + 38699 17664;22441 25931 25947 38041 38041 0.07466537696927844 RNPPGFAF 8 Unmodified _RNPPGFAF_ 0 0 0 nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3;nc|ENSG00000115875|Q16629-3|SRSF7;nc|ENSG00000115875|Q16629-2|SRSF7;nc|ENSG00000115875|Q16629-4|SRSF7;ENSG00000115875|ENST00000313117|SRSF7 nc|ENSG00000112081|P84103-2|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.2336730957031 2 453.235045 904.455536 NaN NaN NaN NaN NaN NaN NaN 68.597 1 65.417 64.917 65.917 -3.1796 0 0 0 0.21486 1 13326 13326 9.3474 1.4373 1 38700 2669 25932 25948 38042 38042 -0.0005133372562795557 RNPVEKLP 8 Unmodified _RNPVEKLP_ 0 0 0 HYDIN|p.G1895V|1|0.43|ENSG00000157423|chr16:70964832-70964832|C/A|missense_variant HYDIN|p.G1895V|1|0.43|ENSG00000157423|chr16:70964832-70964832|C/A|missense_variant HYDIN|p.G1895V|1|0.43|ENSG00000157423|chr16:70964832-70964832|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0391540527344 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 121.9 1 121.9 121.4 122.4 0 0 0 0 0.21486 1 24031 24031 1.6526 0 1 38701 11930 25933 25949 38043 38043 0.07245180025711306 RNPVSRQRTA 10 Unmodified _RNPVSRQRTA_ 0 0 0 ENST00000553961.1_1_14:69446487-69454135:+|nuORF ENST00000553961.1_1_14:69446487-69454135:+|nuORF ENST00000553961.1_1_14:69446487-69454135:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 592.82177734375 2 592.833977 1183.6534 NaN NaN NaN NaN NaN NaN NaN 10.601 1 9.6974 9.1974 10.197 -0.90401 0 0 0 0.22588 1 1340 1340 0.40072 0 1 38702 11211 25934 25950 38044 38044 0.06892060466225303 RNQIRALCL 9 Unmodified _RNQIRALCL_ 0 0 0 REV__RNF133|p.F278Sfs*43|1|0.17|ENSG00000188050|chr7:122698086-122698086|A/-|frameshift_variant REV__RNF133|p.F278Sfs*43|1|0.17|ENSG00000188050|chr7:122698086-122698086|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7859497070312 2 543.813667 1085.61278 NaN NaN NaN NaN NaN NaN NaN 73.393 1 69.799 69.299 70.299 -3.594 0 0 0 0.23508 1 13930 13930 7.9102 1.187 1 + 38703 19128 25935 25951 38045 38045 0.07340002822229508 RNRKRVRSY 9 Unmodified _RNRKRVRSY_ 0 0 0 REV__nc|ENSG00000204406|Q9P267|MBD5 REV__nc|ENSG00000204406|Q9P267|MBD5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 617.8893432617188 2 617.865612 1233.71667 NaN NaN NaN NaN NaN NaN NaN 166.15 1 161.36 160.86 161.86 -4.7898 0 0 0 0.19646 1 33342 33342 0.12781 0 1 + 38704 19532 25936 25952 38046 38046 0.10916045974136068 RNRRGEKY 8 Unmodified _RNRRGEKY_ 0 0 0 nc|ENSG00000155846|Q86YN6-6|PPARGC1B;nc|ENSG00000155846|Q86YN6-5|PPARGC1B;nc|ENSG00000155846|Q86YN6-4|PPARGC1B;nc|ENSG00000155846|Q86YN6-2|PPARGC1B;nc|ENSG00000155846|Q86YN6-3|PPARGC1B;ENSG00000155846|ENST00000309241|PPARGC1B nc|ENSG00000155846|Q86YN6-6|PPARGC1B nc|ENSG00000155846|Q86YN6-6|PPARGC1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013244628906 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 96.102 1 92.221 91.721 92.721 -3.881 0 0 0 0.21486 1 18444 18444 3.5965 0.0094347 1 38705 5065 25937 25953 38047 38047 0.043487173747280394 RNRYAGEVY 9 Unmodified _RNRYAGEVY_ 0 0 0 PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant;PI4KA|p.H1295Pfs*13|1|0.28|ENSG00000241973|chr22:20734411-20734412|-/G|frameshift_variant;PI4KA|p.H1295Tfs*36|2|0.31|ENSG00000241973|chr22:20734412-20734412|G/-|frameshift_variant;ENSG00000241973|ENST00000255882|PI4KA PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1844482421875 3 376.524595 1126.55196 0.26403 9.9415E-05 -0.49731 -0.00018725 -0.23328 -8.7835E-05 376.52425252054337 32.324 0.42131 30.297 30.079 30.5 -2.0264 24 11 3 0 0 0 0.27464 1 5601 5601 29.082 28.673 1 609360 38706 7862 25938 25954 38048 38048 -0.00625810956330497 RNRYAGEVY 9 Unmodified _RNRYAGEVY_ 0 0 0 PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant;PI4KA|p.H1295Pfs*13|1|0.28|ENSG00000241973|chr22:20734411-20734412|-/G|frameshift_variant;PI4KA|p.H1295Tfs*36|2|0.31|ENSG00000241973|chr22:20734412-20734412|G/-|frameshift_variant;ENSG00000241973|ENST00000255882|PI4KA PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 376.524595 1126.55196 -0.12459 -4.6911E-05 0.63943 0.00024076 0.51484 0.00019385 376.5247681103261 30.091 0.27962 30.091 29.955 30.235 0 -0.11964 0.00079695 NaN 29.082 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 343070 38707 7862 25938 25954 -0.00625810956330497 RNRYAGEVY 9 Unmodified _RNRYAGEVY_ 0 0 0 PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant;PI4KA|p.H1295Pfs*13|1|0.28|ENSG00000241973|chr22:20734411-20734412|-/G|frameshift_variant;PI4KA|p.H1295Tfs*36|2|0.31|ENSG00000241973|chr22:20734412-20734412|G/-|frameshift_variant;ENSG00000241973|ENST00000255882|PI4KA PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 376.524595 1126.55196 -0.23329 -8.7838E-05 -0.18812 -7.083E-05 -0.4214 -0.00015867 376.52448632248013 32.392 0.38091 30.244 30.071 30.452 -2.1483 0.03303 -0.00013782 NaN 29.082 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 492100 38708 7862 25938 25954 -0.00625810956330497 RNTIEEKIL 9 Unmodified _RNTIEEKIL_ 0 0 0 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 372.11309814453125 3 372.552151 1114.63462 0.092734 3.4548E-05 -0.48594 -0.00018104 -0.3932 -0.00014649 372.5519424852217 60.581 0.48421 57.267 56.979 57.463 -3.3139 22 13 2 0 0 0 0.88284 1 11258 11258 0.96228 0.82238 1 837120 38709 25984 25939 25955 38049 38049 0.081890860518115 RNTIEEKIL 9 Unmodified _RNTIEEKIL_ 0 0 0 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 372.552151 1114.63462 -0.41342 -0.00015402 0.043809 1.6321E-05 -0.36961 -0.0001377 372.55207660029475 57.474 0.66143 57.474 57.128 57.79 0 0.1667 0.00026028 NaN 0.96228 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 734660 38710 25984 25939 25955 0.081890860518115 RNTIEEKIL 9 Unmodified _RNTIEEKIL_ 0 0 0 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 372.552151 1114.63462 -0.25413 -9.4677E-05 -0.26145 -9.7404E-05 -0.51558 -0.00019208 372.552040799609 60.209 0.48676 57.276 56.923 57.41 -2.9333 -0.03109 -8.0897E-05 NaN 0.96228 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1384300 38711 25984 25939 25955 0.081890860518115 RNVCGIPD 8 Unmodified _RNVCGIPD_ 0 0 0 ENSG00000112139|ENST00000434837|MDGA1;nc|ENSG00000112139|Q8NFP4-2|MDGA1;ENST00000478143.2_1_6:37617732-37622777:-|nuORF ENSG00000112139|ENST00000434837|MDGA1 ENSG00000112139|ENST00000434837|MDGA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.216064453125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 90.824 1 90.824 90.324 91.324 0 0 0 0 0.21486 1 17745 17745 5.2307 0 1 38712 2671 25940 25956 38050 38050 -0.023875877025943737 RNWERNLARLR 11 Unmodified _RNWERNLARLR_ 0 0 0 ENST00000478241.6_2_12:56223797-56224400:+|nuORF ENST00000478241.6_2_12:56223797-56224400:+|nuORF ENST00000478241.6_2_12:56223797-56224400:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.39208984375 2 742.421282 1482.82801 NaN NaN NaN NaN NaN NaN NaN 132.04 1 132.04 131.54 132.54 0 0 0 0 0.22632 1 26101 26101 0.00056442 0 1 38713 10312 25941 25957 38051 38051 0.10591060611409375 RNWERNLARLR 11 Unmodified _RNWERNLARLR_ 0 0 0 ENST00000478241.6_2_12:56223797-56224400:+|nuORF ENST00000478241.6_2_12:56223797-56224400:+|nuORF ENST00000478241.6_2_12:56223797-56224400:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.38623046875 2 742.421282 1482.82801 NaN NaN NaN NaN NaN NaN NaN 178.44 1 173.57 173.07 174.07 -4.8686 0 0 0 0.22632 1 35527 35527 0.00056442 0 1 38714 10312 25941 25957 38052 38052 0.10591060611409375 RNWIRKRKRKK 11 Unmodified _RNWIRKRKRKK_ 0 0 0 REV__UTP23|p.R232W|1|0.1|ENSG00000147679|chr8:116771786-116771786|C/T|missense_variant REV__UTP23|p.R232W|1|0.1|ENSG00000147679|chr8:116771786-116771786|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3911743164062 2 785.007859 1568.00117 NaN NaN NaN NaN NaN NaN NaN 145.2 1 140.13 139.63 140.63 -5.0671 0 0 0 0.22632 1 28050 28050 0 0 1 + 38715 25528 25942 25958 38053 38053 0.23988471458437743 RNWPQSAV 8 Unmodified _RNWPQSAV_ 0 0 0 REV__ENSG00000167077|ENST00000401548|MEI1 REV__ENSG00000167077|ENST00000401548|MEI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72894287109375 2 479.248683 956.482814 -0.043599 -2.0895E-05 0.24059 0.0001153 0.19699 9.4406E-05 479.2487737938671 43.207 0.86051 40.441 40.114 40.974 -2.7661 43 23 2 0 0 0 0.97966 1 7745 7745 16.942 16.942 1 4134800 + 38716 17898 25943 25959 38054 38054 0.0028314981475432432 RNWRRWYRSFK 11 Unmodified _RNWRRWYRSFK_ 0 0 0 REV__CACNA1C|p.E1194Gfs*8|1|0.17|ENSG00000151067|chr12:2608669-2608670|-/G|frameshift_variant REV__CACNA1C|p.E1194Gfs*8|1|0.17|ENSG00000151067|chr12:2608669-2608670|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 552.3804931640625 3 552.299042 1653.8753 0.15972 8.8215E-05 0.0034686 1.9157E-06 0.16319 9.0131E-05 552.634685044017 151.23 0.21161 145.99 145.83 146.04 -5.2365 6 5 2 0 0 0 0.89122 1 29301 29301 0.50596 0 1 1155200 + 38717 13235 25944 25960 38055 38055 0.07451339882368302 RNYLHYSL 8 Unmodified _RNYLHYSL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.277099609375 2 533.277441 1064.54033 0.33778 0.00018013 -0.94895 -0.00050605 -0.61117 -0.00032592 533.2768658834815 82.44 0.83702 82.44 82.105 82.942 0 65 23 4 0 0 0 0.055617 3 16074 16026;16074;16125 108 36.075 1 26999000 38718 2466 25945 25961 38056;38057;38058 38057 0.01063992020317528 RNYLHYSL 8 Unmodified _RNYLHYSL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27685546875 2 533.277441 1064.54033 0.024312 1.2965E-05 -1.0477 -0.00055871 -1.0234 -0.00054575 533.2767980705564 86.149 0.78982 82.422 82.082 82.872 -3.727 63 21 4 0 0 0 0.14223 2 16796 16796;16835 79.86 68.291 1 24285000 38719 2466 25945 25961 38059;38060 38059 0.01063992020317528 RNYLHYSL 8 Unmodified _RNYLHYSL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2769165039062 2 533.277441 1064.54033 0.12228 6.5207E-05 -1.2658 -0.00067502 -1.1435 -0.00060981 533.2767208809663 86.064 1.0932 82.335 81.955 83.048 -3.7289 69 30 4 0 0 0 0.037002 4 16409 16409;16433;16453;16498 123.45 62.093 1 20292000 38720 2466 25945 25961 38061;38062;38063;38064 38061 0.01063992020317528 RNYLWDFHKYR 11 Unmodified _RNYLWDFHKYR_ 0 0 0 REV__ENSG00000173548|ENST00000308527|SNX33 REV__ENSG00000173548|ENST00000308527|SNX33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2705078125 3 533.27227 1596.79498 -1.0532 -0.00056164 -0.49148 -0.00026209 -1.5447 -0.00082373 533.271441583634 18.82 0.10427 17.184 17.112 17.217 -1.6351 4 2 2 0 0 0 0.66298 1 2811 2811 0.094841 0 1 124770 + 38721 18361 25946 25962 38065 38065 0.02045433768694238 RNYRFFYMFIL 11 Unmodified _RNYRFFYMFIL_ 0 0 0 ENST00000523468.5_1_6:157963626-158049550:+|nuORF;nc|ENSG00000175048|Q8IZN3-2|ZDHHC14;ENSG00000175048|ENST00000359775|ZDHHC14 ENST00000523468.5_1_6:157963626-158049550:+|nuORF ENST00000523468.5_1_6:157963626-158049550:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4041137695312 2 785.405389 1568.79623 NaN NaN NaN NaN NaN NaN NaN 88.468 1 84.718 84.218 85.218 -3.7501 0 0 0 0.23698 1 16933 16933 0.35063 0 1 38722 6382 25947 25963 38066 38066 0.03457931813227333 RNYRFFYMFIL 11 Unmodified _RNYRFFYMFIL_ 0 0 0 ENST00000523468.5_1_6:157963626-158049550:+|nuORF;nc|ENSG00000175048|Q8IZN3-2|ZDHHC14;ENSG00000175048|ENST00000359775|ZDHHC14 ENST00000523468.5_1_6:157963626-158049550:+|nuORF ENST00000523468.5_1_6:157963626-158049550:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4048461914062 2 785.405389 1568.79623 NaN NaN NaN NaN NaN NaN NaN 127.98 1 123.26 122.76 123.76 -4.7251 0 0 0 0.23698 1 24623 24623 1.4819 1.1313 1 38723 6382 25947 25963 38067 38067 0.03457931813227333 RPAPLLIPP 9 Unmodified _RPAPLLIPP_ 0 0 0 ENST00000259254.8_1_2:127453739-127453859:+|nuORF ENST00000259254.8_1_2:127453739-127453859:+|nuORF ENST00000259254.8_1_2:127453739-127453859:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.2121276855469 3 325.211289 972.612037 NaN NaN NaN NaN NaN NaN NaN 97.955 1 97.955 97.455 98.455 0 0 0 0 0.23508 1 19200 19200 1.0715 0 1 38724 8272 25948 25964 38068 38068 0.12463531444836917 RPAQLQPP 8 Unmodified _RPAQLQPP_ 0 0 0 REV__ENSG00000196782|ENST00000509479|MAML3 REV__ENSG00000196782|ENST00000509479|MAML3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7596435546875 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 89.083 1 85.333 84.833 85.833 -3.7501 0 0 0 0.23366 1 17055 17055 0.12286 0 1 + 38725 19281 25949 25965 38069 38069 0.051766243371730525 RPAQRCPT 8 Unmodified _RPAQRCPT_ 0 0 0 REV__THAP11|p.E234Kfs*28|1|0.37|ENSG00000168286|chr16:67843251-67843251|G/-|frameshift_variant REV__THAP11|p.E234Kfs*28|1|0.37|ENSG00000168286|chr16:67843251-67843251|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16455078125 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 113.66 1 109.13 108.63 109.63 -4.5259 0 0 0 0.23899 1 21820 21820 1.3295 1.1227 1 + 38726 24790 25950 25966 38070 38070 0.004232097999192774 RPAQTMPRA 9 Unmodified _RPAQTMPRA_ 0 0 0 FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.1893005371094 3 343.187037 1026.53928 NaN NaN NaN NaN NaN NaN NaN 176.36 1 171.49 170.99 171.99 -4.8739 0 0 0 0.23508 1 35083 35083 1.0715 0 1 38727 11805 25951 25967 38071 38071 0.027074543797880324 RPARRGSGV 9 Unmodified _RPARRGSGV_ 0 0 0 REV__ENST00000517417.2_1_5:140892285-140892435:+|nuORF REV__ENST00000517417.2_1_5:140892285-140892435:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.1900634765625 3 319.189658 954.547145 NaN NaN NaN NaN NaN NaN NaN 112.95 1 108.67 108.17 109.17 -4.2725 0 0 0 0.19632 1 21750 21750 0.40827 0.23627 1 + 38728 22597 25952 25968 38072 38072 0.06805349691569518 RPARVKRRKQ 10 Unmodified _RPARVKRRKQ_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2;ENST00000529624.5_3_15:28877823-28916776:+|nuORF;ENST00000528584.5_1_15:28900509-28916776:+|nuORF;ENST00000530420.5_1_15:28900570-28916776:+|nuORF;HERC2|p.S2454L|1|0.35|ENSG00000128731|chr15:28202466-28202466|G/A|missense_variant;ENST00000567869.1_1_15:28436080-28447805:-|nuORF ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.8908996582031 3 432.281211 1293.8218 NaN NaN NaN NaN NaN NaN NaN 150.41 1 145.21 144.71 145.71 -5.1994 0 0 0 0.22588 1 29146 29146 0.69767 0.24315 1 38729 3540 25953 25969 38073 38073 0.1866458717054229 RPCEQLGA 8 Unmodified _RPCEQLGA_ 0 0 0 REV__RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant REV__RPGRIP1L|p.N241*|1|0.28|ENSG00000103494|chr16:53686487-53686488|TT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22802734375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 103.54 1 103.54 103.04 104.04 0 0 0 0 0.22934 1 20347 20347 1.7423 1.1154 1 + 38730 14885 25954 25970 38074 38074 -0.023875877025943737 RPCPLGPAP 9 Unmodified _RPCPLGPAP_ 0 0 0 ENST00000392894.7_1_3:149530586-149530679:+|nuORF ENST00000392894.7_1_3:149530586-149530679:+|nuORF ENST00000392894.7_1_3:149530586-149530679:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 454.2440490722656 2 454.244555 906.474557 NaN NaN NaN NaN NaN NaN NaN 155.36 1 155.36 154.86 155.86 0 0 0 0 0.1966 1 31146 31146 2.6312 1.4164 1 38731 9384 25955 25971 38075 38075 0.017578795737676955 RPDRSRLRH 9 Unmodified _RPDRSRLRH_ 0 0 0 REV__ENST00000591479.1_1_19:56133119-56135920:-|nuORF REV__ENST00000591479.1_1_19:56133119-56135920:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 398.3583679199219 3 398.230516 1191.66972 -0.85154 -0.00033911 0.75646 0.00030124 -0.095082 -3.7864E-05 398.23080134289575 12.617 0.27766 11.608 11.521 11.799 -1.0098 12 7 3 0 0 0 0.81492 1 1758 1758 1.0715 0.29493 1 3036800 + 38732 23337 25956 25972 38076 38076 0.08155186422982297 RPDRSRLRH 9 Unmodified _RPDRSRLRH_ 0 0 0 REV__ENST00000591479.1_1_19:56133119-56135920:-|nuORF REV__ENST00000591479.1_1_19:56133119-56135920:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 398.230516 1191.66972 -0.85154 -0.00033911 0.75646 0.00030124 -0.095082 -3.7864E-05 398.23080134289575 12.617 0.27766 11.608 11.521 11.799 -1.0098 0.076276 -0.00026636 NaN 1.0715 12 7 3 NaN NaN NaN NaN 0 NaN NaN 0 3036800 + 38733 23337 25956 25972 0.08155186422982297 RPDRSRLRH 9 Unmodified _RPDRSRLRH_ 0 0 0 REV__ENST00000591479.1_1_19:56133119-56135920:-|nuORF REV__ENST00000591479.1_1_19:56133119-56135920:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 398.230516 1191.66972 -0.68614 -0.00027324 0.69558 0.000277 0.0094421 3.7601E-06 398.2308911674909 12.614 0.13916 11.485 11.421 11.56 -1.1293 -0.046354 -0.00033908 NaN 1.0715 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 824130 + 38734 23337 25956 25972 0.08155186422982297 RPDRSRLRH 9 Unmodified _RPDRSRLRH_ 0 0 0 REV__ENST00000591479.1_1_19:56133119-56135920:-|nuORF REV__ENST00000591479.1_1_19:56133119-56135920:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 398.230516 1191.66972 -2.1604 -0.00086035 1.7691 0.00070449 -0.39139 -0.00015586 398.231301130683 12.622 0.17053 11.501 11.449 11.62 -1.1206 -0.029922 0.00094338 NaN 1.0715 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1365800 + 38735 23337 25956 25972 0.08155186422982297 RPELGRCSE 9 Unmodified _RPELGRCSE_ 0 0 0 ENST00000309890.11_1_17:3827865-3828672:-|nuORF ENST00000309890.11_1_17:3827865-3828672:-|nuORF ENST00000309890.11_1_17:3827865-3828672:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6829223632812 2 523.756015 1045.49748 NaN NaN NaN NaN NaN NaN NaN 150.08 1 144.88 144.38 145.38 -5.1994 0 0 0 0.23508 1 29077 29077 9.3831 0 1 38736 8638 25957 25973 38077 38077 -0.02345146099401063 RPELMKIL 8 Unmodified _RPELMKIL_ 0 0 0 ENSG00000068784|ENST00000263736|SRBD1;SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant;nc|ENSG00000068784|Q8N5C6-2|SRBD1 ENSG00000068784|ENST00000263736|SRBD1 ENSG00000068784|ENST00000263736|SRBD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 500.3052062988281 2 500.304613 998.594672 NaN NaN NaN NaN NaN NaN NaN 171.55 1 166.63 166.13 167.13 -4.9149 0 0 0 0.23312 1 33983 33983 6.2058 0 1 38737 1410 25958 25974 38078 38078 0.09531867847545072 RPFFVPGV 8 Unmodified _RPFFVPGV_ 0 0 0 ENST00000078429.8_1_19:3122902-3123160:+|nuORF ENST00000078429.8_1_19:3122902-3123160:+|nuORF ENST00000078429.8_1_19:3122902-3123160:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2406005859375 2 459.763438 917.512323 NaN NaN NaN NaN NaN NaN NaN 28.936 1 26.98 26.48 27.48 -1.9561 0 0 0 0.23899 1 5191 5191 1.3295 0 1 38738 8073 25959 25975 38079 38079 0.05026713830909557 RPFGRRSLY 9 Unmodified _RPFGRRSLY_ 0 0 0 ENST00000589123.5_2_19:3462863-3463967:+|nuORF ENST00000589123.5_2_19:3462863-3463967:+|nuORF ENST00000589123.5_2_19:3462863-3463967:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3259887695312 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 125.13 1 120.36 119.86 120.86 -4.7681 0 0 0 0.19679 1 24021 24021 0.37959 0 1 38739 11580 25960 25976 38080 38080 0.06666764931219404 RPFQCLKCDKR 11 Unmodified _RPFQCLKCDKR_ 0 0 0 nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786 nc|ENSG00000197362|Q8N393-2|ZNF786 nc|ENSG00000197362|Q8N393-2|ZNF786 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2464294433594 3 465.244558 1392.71184 NaN NaN NaN NaN NaN NaN NaN 58.847 1 55.596 55.096 56.096 -3.2517 0 0 0 0.22632 1 10939 10939 0.0059557 0 1 38740 7360 25961 25977 38081 38081 0.0311965772482381 RPGKGPRF 8 Unmodified _RPGKGPRF_ 0 0 0 nc|ENSG00000223350|A0A0B4J1Y8|IGLV9-49 nc|ENSG00000223350|A0A0B4J1Y8|IGLV9-49 nc|ENSG00000223350|A0A0B4J1Y8|IGLV9-49 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22955322265625 2 457.769586 913.524619 -0.53717 -0.0002459 0.55511 0.00025411 0.017935 8.2102E-06 457.7698143667038 16.808 0.76033 15.535 15.28 16.041 -1.2722 46 21 4 0 0 0 0.40661 1 2431 2431 32.117 1.8922 1 11604000 38741 12599 25962 25978 38082 38082 0.06439750293941415 RPGKGPRF 8 Unmodified _RPGKGPRF_ 0 0 0 nc|ENSG00000223350|A0A0B4J1Y8|IGLV9-49 nc|ENSG00000223350|A0A0B4J1Y8|IGLV9-49 nc|ENSG00000223350|A0A0B4J1Y8|IGLV9-49 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 457.769586 913.524619 0.17131 7.8421E-05 -0.092027 -4.2127E-05 0.079284 3.6294E-05 457.7695093611254 15.614 0.72803 15.614 15.401 16.129 0 0.035258 -0.00033416 NaN 32.117 57 20 4 NaN NaN NaN NaN 0 NaN NaN 0 32593000 38742 12599 25962 25978 0.06439750293941415 RPGKVVIY 8 Unmodified _RPGKVVIY_ 0 0 0 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1971740722656 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 111.46 1 107.04 106.54 107.54 -4.4231 0 0 0 0.21486 1 21962 21962 1.6526 1.1943 1 38743 2684 25963 25979 38083 38083 0.09702671893694514 RPGKVVIY 8 Unmodified _RPGKVVIY_ 0 0 0 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.233642578125 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 113.89 1 109.59 109.09 110.09 -4.3008 0 0 0 0.21486 1 21937 21937 1.6526 1.1943 1 38744 2684 25963 25979 38084 38084 0.09702671893694514 RPGLGMVRG 9 Unmodified _RPGLGMVRG_ 0 0 0 REV__ENST00000359333.7_1_7:142982057-142982309:+|nuORF REV__ENST00000359333.7_1_7:142982057-142982309:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.8472595214844 3 314.848245 941.522904 NaN NaN NaN NaN NaN NaN NaN 25.85 1 23.928 23.428 24.428 -1.9222 0 0 0 0.19657 1 4265 4265 4.897 0 1 + 38745 20851 25964 25980 38085 38085 0.04980373213675193 RPGPIVPPV 9 Unmodified _RPGPIVPPV_ 0 0 0 nc|ENSG00000043514|Q9H3H1-3|TRIT1;nc|ENSG00000043514|Q9H3H1-2|TRIT1;nc|ENSG00000043514|Q9H3H1-5|TRIT1;ENSG00000043514|ENST00000316891|TRIT1;nc|ENSG00000043514|Q9H3H1-6|TRIT1 nc|ENSG00000043514|Q9H3H1-3|TRIT1 nc|ENSG00000043514|Q9H3H1-3|TRIT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1963195800781 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 85.008 1 81.344 80.844 81.844 -3.6641 0 0 0 0.23508 1 16618 16618 1.0715 0.61312 1 38746 1207 25965 25981 38086 38086 0.09702671893705883 RPGPIVPPV 9 Unmodified _RPGPIVPPV_ 0 0 0 nc|ENSG00000043514|Q9H3H1-3|TRIT1;nc|ENSG00000043514|Q9H3H1-2|TRIT1;nc|ENSG00000043514|Q9H3H1-5|TRIT1;ENSG00000043514|ENST00000316891|TRIT1;nc|ENSG00000043514|Q9H3H1-6|TRIT1 nc|ENSG00000043514|Q9H3H1-3|TRIT1 nc|ENSG00000043514|Q9H3H1-3|TRIT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.20428466796875 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 85.034 1 81.37 80.87 81.87 -3.6641 0 0 0 0.23508 1 16624 16624 1.0715 0.61312 1 38747 1207 25965 25981 38087 38087 0.09702671893705883 RPGPIVPPV 9 Unmodified _RPGPIVPPV_ 0 0 0 nc|ENSG00000043514|Q9H3H1-3|TRIT1;nc|ENSG00000043514|Q9H3H1-2|TRIT1;nc|ENSG00000043514|Q9H3H1-5|TRIT1;ENSG00000043514|ENST00000316891|TRIT1;nc|ENSG00000043514|Q9H3H1-6|TRIT1 nc|ENSG00000043514|Q9H3H1-3|TRIT1 nc|ENSG00000043514|Q9H3H1-3|TRIT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.19622802734375 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 90.842 1 87.064 86.564 87.564 -3.7779 0 0 0 0.23508 1 17386 17386 1.0715 0.61312 1 38748 1207 25965 25981 38088 38088 0.09702671893705883 RPGQHLILRY 10 Unmodified _RPGQHLILRY_ 0 0 0 ENST00000490863.5_1_1:54653465-54661292:-|nuORF ENST00000490863.5_1_1:54653465-54661292:-|nuORF ENST00000490863.5_1_1:54653465-54661292:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 418.2197265625 3 418.247285 1251.72002 NaN NaN NaN NaN NaN NaN NaN 73.931 1 70.254 69.754 70.754 -3.6764 0 0 0 0.22588 1 13981 13981 1.9064 0.83491 1 38749 10519 25966 25982 38089 38089 0.10423296028125151 RPGRLRPK 8 Unmodified _RPGRLRPK_ 0 0 0 REV__nc|ENSG00000100593|Q6H9L7-4|ISM2 REV__nc|ENSG00000100593|Q6H9L7-4|ISM2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.258056640625 2 490.317235 978.619916 NaN NaN NaN NaN NaN NaN NaN 89.635 1 89.635 89.135 90.135 0 0 0 0 0.23312 1 17506 17506 6.2058 0 1 + 38750 14722 25967 25983 38090 38090 0.1297510348497326 RPHFPLVP 8 Unmodified _RPHFPLVP_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4;ENST00000466440.1_1_1:52890958-52897138:-|nuORF nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.783447265625 2 481.782162 961.549771 NaN NaN NaN NaN NaN NaN NaN 119.67 1 115.15 114.65 115.65 -4.5221 0 0 0 0.23711 1 23601 23601 1.7423 0 1 38751 3871 25968 25984 38091 38091 0.06745805096511504 RPHRFLLR 8 Unmodified _RPHRFLLR_ 0 0 0 ENST00000583492.1_1_17:79887626-79888002:+|nuORF ENST00000583492.1_1_17:79887626-79888002:+|nuORF ENST00000583492.1_1_17:79887626-79888002:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7721557617188 2 547.838334 1093.66212 NaN NaN NaN NaN NaN NaN NaN 119.27 1 114.77 114.27 115.27 -4.5023 0 0 0 0.2343 1 23522 23522 0.62683 0.36144 1 38752 11515 25969 25985 38092 38092 0.11903078893351449 RPIFIITEY 9 Unmodified _RPIFIITEY_ 0 0 0 ENST00000478995.1_1_X:100611030-100611776:-|nuORF;BTK|p.A638Efs*11|1|0.06|ENSG00000010671|chrX:101349952-101349952|G/-|frameshift_variant;ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK ENST00000478995.1_1_X:100611030-100611776:-|nuORF ENST00000478995.1_1_X:100611030-100611776:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3235473632812 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 121.97 1 117.29 116.79 117.79 -4.6873 0 0 0 0.19632 1 23416 23416 0.073264 0 1 38753 344 25970 25986 38093 38093 0.06935175545504535 RPIHKKKKKPL 11 Unmodified _RPIHKKKKKPL_ 0 0 0 REV__nc|ENSG00000129159|P48547|KCNC1 REV__nc|ENSG00000129159|P48547|KCNC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2384338378906 3 458.313629 1371.91906 NaN NaN NaN NaN NaN NaN NaN 104.91 1 104.91 104.41 105.41 0 0 0 0 0.23698 1 20619 20619 0.45452 0 1 + 38754 15950 25971 25987 38094 38094 0.24797556326825543 RPIIRRITV 9 Unmodified _RPIIRRITV_ 0 0 0 REV__MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|31|2|anti-sense REV__MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|31|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21343994140625 3 375.252258 1122.73495 NaN NaN NaN NaN NaN NaN NaN 177.01 1 172.13 171.63 172.63 -4.8739 0 0 0 0.23508 1 35220 35220 0.23584 0 1 + 38755 23844 25972 25988 38095 38095 0.17848787896105023 RPIVQNRPTA 10 Unmodified _RPIVQNRPTA_ 0 0 0 REV__NUP107|p.T45A|2|0.36|ENSG00000111581|chr12:68689565-68689565|A/G|missense_variant REV__NUP107|p.T45A|2|0.36|ENSG00000111581|chr12:68689565-68689565|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3201904296875 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 152.64 1 147.37 146.87 147.87 -5.2669 0 0 0 2.8426 1 29595 29595 0.043787 0 1 + 38756 24391 25973 25989 38096 38096 0.08778730240078403 RPIVRRGLKRK 11 Unmodified _RPIVRRGLKRK_ 0 0 0 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 689.96435546875 2 689.965129 1377.9157 NaN NaN NaN NaN NaN NaN NaN 176.49 1 176.49 175.99 176.99 0 0 0 0 0.22632 1 36562 36562 0 0 1 + 38757 25473 25974 25990 38097 38097 0.2418630627278162 RPIVRRGLKRK 11 Unmodified _RPIVRRGLKRK_ 0 0 0 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23236083984375 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 94.442 1 90.451 89.951 90.951 -3.9907 0 0 0 0.22632 1 18505 18505 0 0 1 + 38758 25473 25974 25990 38098 38098 0.2418630627278162 RPIVRRGLKRK 11 Unmodified _RPIVRRGLKRK_ 0 0 0 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.234130859375 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 97.545 1 93.447 92.947 93.947 -4.0978 0 0 0 0.22632 1 19142 19142 0.0072825 0.0072825 1 + 38759 25473 25974 25990 38099 38099 0.2418630627278162 RPIVRRGLKRK 11 Unmodified _RPIVRRGLKRK_ 0 0 0 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.234130859375 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 97.557 1 93.459 92.959 93.959 -4.0978 0 0 0 0.23698 1 19144 19144 0 0 1 + 38760 25473 25974 25990 38100 38100 0.2418630627278162 RPIVRRGLKRK 11 Unmodified _RPIVRRGLKRK_ 0 0 0 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2403869628906 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 97.395 1 93.16 92.66 93.66 -4.2348 0 0 0 0.23698 1 18604 18604 0 0 1 + 38761 25473 25974 25990 38101 38101 0.2418630627278162 RPIVRRGLKRK 11 Unmodified _RPIVRRGLKRK_ 0 0 0 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2439270019531 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 97.633 1 93.398 92.898 93.898 -4.2348 0 0 0 0.22632 1 18650 18650 0.0072825 0.0072825 1 + 38762 25473 25974 25990 38102 38102 0.2418630627278162 RPIVRRGLKRK 11 Unmodified _RPIVRRGLKRK_ 0 0 0 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23162841796875 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 107.02 1 102.61 102.11 103.11 -4.4121 0 0 0 0.22632 1 20530 20530 0 0 1 + 38763 25473 25974 25990 38103 38103 0.2418630627278162 RPIVRRGLKRK 11 Unmodified _RPIVRRGLKRK_ 0 0 0 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2356872558594 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 107.23 1 102.82 102.32 103.32 -4.4121 0 0 0 0.22632 1 20570 20570 0 0 1 + 38764 25473 25974 25990 38104 38104 0.2418630627278162 RPIVRRGLKRK 11 Unmodified _RPIVRRGLKRK_ 0 0 0 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 REV__tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24188232421875 3 460.312511 1377.9157 NaN NaN NaN NaN NaN NaN NaN 95.915 1 92.034 91.534 92.534 -3.881 0 0 0 0.22632 1 18407 18407 0 0 1 + 38765 25473 25974 25990 38105 38105 0.2418630627278162 RPKASPPP 8 Unmodified _RPKASPPP_ 0 0 0 ENSG00000214929|ENST00000344803|SPATA31D1 ENSG00000214929|ENST00000344803|SPATA31D1 ENSG00000214929|ENST00000344803|SPATA31D1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25030517578125 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 58.006 1 58.006 57.506 58.506 0 0 0 0 0.23782 1 11097 11097 0.12286 0 1 38766 7736 25975 25991 38106 38106 0.05653239308469438 RPKDEAEA 8 Unmodified _RPKDEAEA_ 0 0 0 REV__ENST00000556674.1_1_14:76448049-76448082:-|nuORF REV__ENST00000556674.1_1_14:76448049-76448082:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22998046875 2 458.230156 914.445759 -0.052774 -2.4183E-05 0.29113 0.00013341 0.23836 0.00010922 458.2301901451368 18.961 0.40786 17.65 17.454 17.862 -1.3109 16 11 2 0 0 0 8448 1 3135 3135 3.2813 1.539 1 303190 + 38767 23002 25976 25992 38107 38107 -0.014885665216752386 RPKEGVSLD 9 Unmodified _RPKEGVSLD_ 0 0 0 REV__ENST00000333396.11_1_3:97690796-97691117:-|nuORF REV__ENST00000333396.11_1_3:97690796-97691117:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.18621826171875 3 334.185579 999.534909 NaN NaN NaN NaN NaN NaN NaN 105.53 1 101.27 100.77 101.77 -4.2638 0 0 0 0.23508 1 20771 20771 2.7352 0 1 + 38768 20639 25977 25993 38108 38108 0.03512268437862076 RPKKSLDI 8 Unmodified _RPKKSLDI_ 0 0 0 REV__ENSG00000179588|ENST00000319555|ZFPM1 REV__ENSG00000179588|ENST00000319555|ZFPM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7333984375 2 478.798009 955.581465 0.094993 4.5483E-05 -0.39693 -0.00019005 -0.30194 -0.00014457 478.7977220659115 77.262 0.38174 73.603 73.399 73.78 -3.6588 15 10 2 0 0 0 0.88445 1 14675 14675 1.7423 0.52744 1 646280 + 38769 18661 25978 25994 38109 38109 0.10189753059808027 RPKPLLLKLL 10 Unmodified _RPKPLLLKLL_ 0 0 0 ENST00000493419.1_1_12:69202221-69210726:+|nuORF;MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-7|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-9|MDM2 ENST00000493419.1_1_12:69202221-69210726:+|nuORF ENST00000493419.1_1_12:69202221-69210726:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 595.923095703125 2 595.921001 1189.82745 NaN NaN NaN NaN NaN NaN NaN 177.89 1 177.89 177.39 178.39 0 0 0 0 2.8426 1 36855 36855 0 0 1 38770 3944 25979 25995 38110 38110 0.24012872909656835 RPLCKEAC 8 Unmodified _RPLCKEAC_ 0 0 0 REV__nc|ENSG00000162591|O75095-2|MEGF6 REV__nc|ENSG00000162591|O75095-2|MEGF6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.86236572265625 3 307.154457 918.441542 NaN NaN NaN NaN NaN NaN NaN 69.126 1 69.126 68.626 69.626 0 0 0 0 0.21486 1 13378 13378 0.45834 0 1 + 38771 24127 25980 25996 38111 38111 -0.020940705406019333 RPLKWALLR 9 Unmodified _RPLKWALLR_ 0 0 0 REV__NOL8|p.N280Ifs*29|1|0.04|ENSG00000198000|chr9:92315786-92315786|T/-|frameshift_variant REV__NOL8|p.N280Ifs*29|1|0.04|ENSG00000198000|chr9:92315786-92315786|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 384.9105529785156 3 384.916987 1151.72913 NaN NaN NaN NaN NaN NaN NaN 9.4595 1 9.4595 8.9595 9.9595 0 0 0 0 0.23508 1 1095 1095 0 0 1 + 38772 24373 25981 25997 38112 38112 0.15933689384428362 RPLLILIRRLF 11 Unmodified _RPLLILIRRLF_ 0 0 0 REV__AluSz_dup93949|chr19:17813592-17813897:-|3.833991762002796|0.3588066818941023|3.42|481.0|18|2|anti-sense REV__AluSz_dup93949|chr19:17813592-17813897:-|3.833991762002796|0.3588066818941023|3.42|481.0|18|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 705.2102661132812 2 705.477006 1408.93946 NaN NaN NaN NaN NaN NaN NaN 176.1 1 171.2 170.7 171.7 -4.9008 0 0 0 0.22632 1 35106 35106 0 0 1 + 38773 13031 25982 25998 38113 38113 0.25134726986630085 RPLLLIVKVK 10 Unmodified _RPLLLIVKVK_ 0 0 0 REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2587890625 2 589.921001 1177.82745 NaN NaN NaN NaN NaN NaN NaN 68.91 1 65.73 65.23 66.23 -3.1796 0 0 0 2.8426 1 13390 13390 0 0 1 + 38774 18651 25983 25999 38114 38114 0.2456487290962741 RPLLLIVKVK 10 Unmodified _RPLLLIVKVK_ 0 0 0 REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2608032226562 2 589.921001 1177.82745 NaN NaN NaN NaN NaN NaN NaN 88.837 1 85.087 84.587 85.587 -3.7501 0 0 0 2.8426 1 17009 17009 0 0 1 + 38775 18651 25983 25999 38115 38115 0.2456487290962741 RPLPRRDFQRQ 11 Unmodified _RPLPRRDFQRQ_ 0 0 0 KCNA3|p.S284Pfs*45|1|0.18|ENSG00000177272|chr1:110673961-110673961|C/-|frameshift_variant;ENSG00000177272|ENST00000369769|KCNA3 KCNA3|p.S284Pfs*45|1|0.18|ENSG00000177272|chr1:110673961-110673961|C/-|frameshift_variant KCNA3|p.S284Pfs*45|1|0.18|ENSG00000177272|chr1:110673961-110673961|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.263916015625 3 490.279647 1467.81711 0.097254 4.7682E-05 -0.23148 -0.00011349 -0.13422 -6.5806E-05 490.27979906408507 47.233 0.1026 44.291 44.24 44.342 -2.9421 4 2 2 0 0 0 0.66087 1 8600 8600 1.4551 1.4289 1 1000600 38776 6503 25984 26000 38116 38116 0.10191658237113188 RPLQQPHKKL 10 Unmodified _RPLQQPHKKL_ 0 0 0 CCP110|p.F187Lfs*22|1|0.11|ENSG00000103540|chr16:19536229-19536230|-/GC|frameshift_variant CCP110|p.F187Lfs*22|1|0.11|ENSG00000103540|chr16:19536229-19536230|-/GC|frameshift_variant CCP110|p.F187Lfs*22|1|0.11|ENSG00000103540|chr16:19536229-19536230|-/GC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7738037109375 2 622.882939 1243.75132 NaN NaN NaN NaN NaN NaN NaN 121.01 1 116.49 115.99 116.99 -4.5221 0 0 0 0.22588 1 23856 23856 3.5965 0.31518 1 38777 433 25985 26001 38117 38117 0.13919869062215184 RPLRRRRKVKR 11 Unmodified _RPLRRRRKVKR_ 0 0 0 GPATCH2L|p.L335Yfs*16|1|0.04|ENSG00000089916|chr14:76176641-76176642|-/ACTCTTTCTGCCGAGGGTCACTAATGATA|frameshift_variant;nc|ENSG00000089916|Q9NWQ4-1|GPATCH2L;nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L;ENSG00000089916|ENST00000261530|GPATCH2L GPATCH2L|p.L335Yfs*16|1|0.04|ENSG00000089916|chr14:76176641-76176642|-/ACTCTTTCTGCCGAGGGTCACTAATGATA|frameshift_variant GPATCH2L|p.L335Yfs*16|1|0.04|ENSG00000089916|chr14:76176641-76176642|-/ACTCTTTCTGCCGAGGGTCACTAATGATA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 507.587646484375 3 507.678076 1520.0124 NaN NaN NaN NaN NaN NaN NaN 162.42 1 157.27 156.77 157.77 -5.1438 0 0 0 0.22632 1 31556 31556 0.0072825 0 1 38778 1773 25986 26002 38118 38118 0.2731929355259126 RPLRTRAAK 9 Unmodified _RPLRTRAAK_ 0 0 0 REV__ENSG00000118564|ENST00000341285|FBXL5 REV__ENSG00000118564|ENST00000341285|FBXL5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.10003662109375 3 356.896475 1067.66759 -0.92412 -0.00032981 -2.1999 -0.00078513 -3.124 -0.0011149 356.8957738895944 13.476 0.13929 12.466 12.344 12.484 -1.0098 5 3 2 0 0 0 0.8799 1 1952 1952 2.4985 0 1 341370 + 38779 15558 25987 26003 38119 38119 0.13646757685160082 RPMFGCPP 8 Unmodified _RPMFGCPP_ 0 0 0 REN|p.P95Hfs*76|1|0.22|ENSG00000143839|chr1:204161381-204161381|G/-|frameshift_variant REN|p.P95Hfs*76|1|0.22|ENSG00000143839|chr1:204161381-204161381|G/-|frameshift_variant REN|p.P95Hfs*76|1|0.22|ENSG00000143839|chr1:204161381-204161381|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 302.0450439453125 3 302.143781 903.409514 NaN NaN NaN NaN NaN NaN NaN 32.561 1 30.48 29.98 30.98 -2.0808 0 0 0 0.21486 1 5652 5652 1.6526 0 1 38780 12875 25988 26004 38120 38120 -0.04605438223723013 RPNNLYQVV 9 Unmodified _RPNNLYQVV_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 368.2041931152344 3 368.204974 1101.59309 NaN NaN NaN NaN NaN NaN NaN 170.14 1 165.21 164.71 165.71 -4.9295 0 0 0 0.23508 1 33633 33633 2.4985 0 1 + 38781 14429 25989 26005 38121 38121 0.046359500831158584 RPPAPPPL 8 Unmodified _RPPAPPPL_ 0 0 0 REV__ENSG00000130950|ENST00000253262|NUTM2F;REV__ENST00000456950.6_1_17:40821512-40828020:-|nuORF REV__ENSG00000130950|ENST00000253262|NUTM2F MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 422.7540588378906 2 422.755613 843.496673 NaN NaN NaN NaN NaN NaN NaN 145.99 1 140.99 140.49 141.49 -5 0 0 0 0.23749 1 28247 28247 0.12286 0 1 + 38782 16041;14223 25990 26006 38122 38122 0.06866427313832446 RPPAVPIQ 8 Unmodified _RPPAVPIQ_ 0 0 0 REV__ENST00000222673.5_1_7:44739780-44741200:+|nuORF REV__ENST00000222673.5_1_7:44739780-44741200:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 439.268310546875 2 439.266345 876.518136 NaN NaN NaN NaN NaN NaN NaN 12.656 1 11.527 11.027 12.027 -1.1293 0 0 0 0.2396 1 1571 1571 0.30703 0 1 + 38783 20038 25991 26007 38123 38123 0.07493812342568162 RPPLSEDF 8 Unmodified _RPPLSEDF_ 0 0 0 nc|ENSG00000159314|Q6ZUM4-4|ARHGAP27 nc|ENSG00000159314|Q6ZUM4-4|ARHGAP27 nc|ENSG00000159314|Q6ZUM4-4|ARHGAP27 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23663330078125 2 480.742899 959.471246 0.41067 0.00019743 1.873 0.00090043 2.2837 0.0010979 480.7451935232949 117.14 0.18144 112.78 112.73 112.91 -4.3585 6 4 2 0 0 0 8448 1 22567 22567 3.2813 3.1584 1 743410 38784 12401 25992 26008 38124 38124 -0.010110919992484924 RPPLYLER 8 Unmodified _RPPLYLER_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;ESPL1|p.Q1311Rfs*21|1|0.46|ENSG00000135476|chr12:53286668-53286669|AG/-|frameshift_variant ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2688598632812 2 522.303458 1042.59236 NaN NaN NaN NaN NaN NaN NaN 162.25 1 157.46 156.96 157.96 -4.7898 0 0 0 0.22692 1 32283 32283 0.62683 0 1 38785 3928 25993 26009 38125 38125 0.07277155434076121 RPPNHPDP 8 Unmodified _RPPNHPDP_ 0 0 0 ARAP3|p.Q391Nfs*24|2|0.28|ENSG00000120318|chr5:141672848-141672848|G/-|frameshift_variant ARAP3|p.Q391Nfs*24|2|0.28|ENSG00000120318|chr5:141672848-141672848|G/-|frameshift_variant ARAP3|p.Q391Nfs*24|2|0.28|ENSG00000120318|chr5:141672848-141672848|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2419128417969 2 465.233033 928.451513 NaN NaN NaN NaN NaN NaN NaN 63.373 1 60.117 59.617 60.617 -3.2567 0 0 0 0.23025 1 11891 11891 0.25148 0.17821 1 38786 192 25994 26010 38126 38126 -0.015574232193444004 RPPNHPDP 8 Unmodified _RPPNHPDP_ 0 0 0 ARAP3|p.Q391Nfs*24|2|0.28|ENSG00000120318|chr5:141672848-141672848|G/-|frameshift_variant ARAP3|p.Q391Nfs*24|2|0.28|ENSG00000120318|chr5:141672848-141672848|G/-|frameshift_variant ARAP3|p.Q391Nfs*24|2|0.28|ENSG00000120318|chr5:141672848-141672848|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24139404296875 2 465.233033 928.451513 NaN NaN NaN NaN NaN NaN NaN 64.49 1 61.234 60.734 61.734 -3.2567 0 0 0 0.2343 1 12109 12109 0.12286 0 1 38787 192 25994 26010 38127 38127 -0.015574232193444004 RPPPRPPI 8 Unmodified _RPPPRPPI_ 0 0 0 REV__ENST00000519716.6_1_19:17715745-17715967:-|nuORF REV__ENST00000519716.6_1_19:17715745-17715967:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2464294433594 2 465.287611 928.56067 NaN NaN NaN NaN NaN NaN NaN 177.6 1 172.73 172.23 173.23 -4.8686 0 0 0 0.2396 1 35346 35346 0.30703 0 1 + 38788 22623 25995 26011 38128 38128 0.09353207470792313 RPPVGLLLLLL 11 Unmodified _RPPVGLLLLLL_ 0 0 0 REV__WFIKKN2|p.S143Pfs*32|1|0.54|ENSG00000173714|chr17:50839711-50839712|-/CC|frameshift_variant REV__WFIKKN2|p.S143Pfs*32|1|0.54|ENSG00000173714|chr17:50839711-50839712|-/CC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2922973632812 2 602.413009 1202.81146 NaN NaN NaN NaN NaN NaN NaN 126.35 1 121.73 121.23 122.23 -4.6172 0 0 0 0.22632 1 24910 24910 0 0 1 + 38789 18371 25996 26012 38129 38129 0.2181716667278124 RPQDDEEEE 9 Unmodified _RPQDDEEEE_ 0 0 0 CTNNBL1|p.R19Q|1|0.29|ENSG00000132792|chr20:37732904-37732904|G/A|missense_variant CTNNBL1|p.R19Q|1|0.29|ENSG00000132792|chr20:37732904-37732904|G/A|missense_variant CTNNBL1|p.R19Q|1|0.29|ENSG00000132792|chr20:37732904-37732904|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 382.8297424316406 3 382.823035 1145.44728 0.14849 5.6844E-05 -2.2276 -0.00085278 -2.0791 -0.00079593 383.1556320504944 48.98 0.35196 48.98 48.703 49.055 0 13 9 2 0 0 0 0.63394 1 9201 9201 0.12781 0 1 777380 38790 746 25997 26013 38130 38130 -0.1196302201421986 RPQVSVIY 8 Unmodified _RPQVSVIY_ 0 0 0 REV__ENSG00000100368|ENST00000403662|CSF2RB REV__ENSG00000100368|ENST00000403662|CSF2RB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77838134765625 2 481.276909 960.539266 -0.24277 -0.00011684 0.50743 0.00024421 0.26466 0.00012737 481.277128205733 57.277 1.9408 57.277 56.536 58.477 0 96 55 2 0 0 0 8448 2 10936 10936;10986 1.4551 0.77368 1 1919100 + 38791 14702 25998 26014 38131;38132 38131 0.057417776514284924 RPQVSVIY 8 Unmodified _RPQVSVIY_ 0 0 0 REV__ENSG00000100368|ENST00000403662|CSF2RB REV__ENSG00000100368|ENST00000403662|CSF2RB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.778564453125 2 481.276909 960.539266 0.12047 5.7979E-05 0.047624 2.292E-05 0.16809 8.0899E-05 481.27687248266113 60.892 2.1052 57.523 56.391 58.497 -3.3694 85 59 2 0 0 0 8448 1 11253 11253 2.643 0 1 1455300 + 38792 14702 25998 26014 38133 38133 0.057417776514284924 RPRFRRSRRF 10 Unmodified _RPRFRRSRRF_ 0 0 0 REV__ENSG00000044090|ENST00000265348|CUL7 REV__ENSG00000044090|ENST00000265348|CUL7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7272644042969 3 478.620227 1432.83885 NaN NaN NaN NaN NaN NaN NaN 143.58 1 138.92 138.42 139.42 -4.656 0 0 0 2.8426 1 28399 28399 0.063865 0.032455 1 + 38793 14055 25999 26015 38134 38134 0.13974507776333667 RPRHFLRNWLR 11 Unmodified _RPRHFLRNWLR_ 0 0 0 REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.19659423828125 5 310.98437 1549.88547 -0.67043 -0.00020849 0.36562 0.0001137 -0.30481 -9.4792E-05 311.1853899366025 6.6949 2.8908 5.6503 4.2079 7.0987 -1.0446 112 82 2 0 0 0 0.82733 2 374 374;400 0 0 1 85602 + 38794 16038 26000 26016 38135;38136 38135 0.13251947607636794 RPRHFLRNWLR 11 Unmodified _RPRHFLRNWLR_ 0 0 0 REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.22216796875 5 310.98437 1549.88547 -0.67043 -0.00020849 0.36562 0.0001137 -0.30481 -9.4792E-05 311.1853899366025 6.6949 2.8908 5.6503 4.2079 7.0987 -1.0446 112 82 2 0 0 0 0.96228 1 351 351 0 0 1 85602 + 38795 16038 26000 26016 38137 38137 0.13251947607636794 RPRKRRRPRPR 11 Unmodified _RPRKRRRPRPR_ 0 0 0 ENSG00000133247|ENST00000255613|KMT5C ENSG00000133247|ENST00000255613|KMT5C ENSG00000133247|ENST00000255613|KMT5C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 511.3432922363281 3 510.997809 1529.9716 NaN NaN NaN NaN NaN NaN NaN 171.06 1 166.14 165.64 166.64 -4.9149 0 0 0 0.23698 1 33848 33848 0 0 1 38796 3793 26001 26017 38138 38138 0.22780952233006246 RPRNLLLAI 9 Unmodified _RPRNLLLAI_ 0 0 0 REV__ENSG00000188191|ENST00000537384|PRKAR1B REV__ENSG00000188191|ENST00000537384|PRKAR1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.275634765625 2 533.3482 1064.68185 NaN NaN NaN NaN NaN NaN NaN 132.02 1 127.17 126.67 127.67 -4.8527 0 0 0 0.19634 1 25358 25358 0.40827 0.28045 1 + 38797 19137 26002 26018 38139 38139 0.15209410113470767 RPRPKGLE 8 Unmodified _RPRPKGLE_ 0 0 0 ENST00000440748.1_1_7:37415149-37415623:+|nuORF;ENST00000477729.1_1_15:60696796-60696997:+|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;chr6:34425221-34425583|466|19.44|0.0|20.89|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;nc|ENSG00000101278|Q9NQ39|RPS10P5 ENST00000440748.1_1_7:37415149-37415623:+|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.8798522949219 3 318.194409 951.561398 -0.93155 -0.00029642 0.71045 0.00022606 -0.2211 -7.0353E-05 318.1945555832945 14.754 0.20838 13.64 13.536 13.744 -1.1142 8 5 2 0 0 0 8448 1 2242 2242 1.3295 1.2563 1 270400 38798 9887 26003 26019 38140 38140 0.08368002119846096 RPRPKGLE 8 Unmodified _RPRPKGLE_ 0 0 0 ENST00000440748.1_1_7:37415149-37415623:+|nuORF;ENST00000477729.1_1_15:60696796-60696997:+|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;chr6:34425221-34425583|466|19.44|0.0|20.89|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;nc|ENSG00000101278|Q9NQ39|RPS10P5 ENST00000440748.1_1_7:37415149-37415623:+|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 318.194409 951.561398 -0.60243 -0.00019169 0.92388 0.00029398 0.32146 0.00010229 318.19463183381674 13.94 0.24462 13.94 13.828 14.073 0 0.20852 -2.079E-05 NaN 1.3295 11 6 3 NaN NaN NaN NaN 0 NaN NaN 0 460690 38799 9887 26003 26019 0.08368002119846096 RPRPKGLE 8 Unmodified _RPRPKGLE_ 0 0 0 ENST00000440748.1_1_7:37415149-37415623:+|nuORF;ENST00000477729.1_1_15:60696796-60696997:+|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;chr6:34425221-34425583|466|19.44|0.0|20.89|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;nc|ENSG00000101278|Q9NQ39|RPS10P5 ENST00000440748.1_1_7:37415149-37415623:+|nuORF ENST00000440748.1_1_7:37415149-37415623:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 318.194409 951.561398 -0.61428 -0.00019546 1.1887 0.00037825 0.57447 0.00018279 318.19484703904124 14.788 0.13653 13.615 13.495 13.631 -1.173 -0.11673 0.00023204 NaN 1.3295 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 173440 38800 9887 26003 26019 0.08368002119846096 RPRPLLLLLL 10 Unmodified _RPRPLLLLLL_ 0 0 0 ENSG00000184709|ENST00000371542|LRRC26 ENSG00000184709|ENST00000371542|LRRC26 ENSG00000184709|ENST00000371542|LRRC26 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2933349609375 2 602.418626 1202.8227 1.0688 0.00064388 0.35012 0.00021092 1.4189 0.0008548 602.9219737447057 142.53 0.13954 137.88 137.79 137.93 -4.656 5 3 2 0 0 0 1.1347 1 28170 28170 0.13989 0 1 1512600 38801 6932 26004 26020 38141 38141 0.22939988766893293 RPRRCHYWIPW 11 Unmodified _RPRRCHYWIPW_ 0 0 0 REV__ENSG00000179826|ENST00000621697|MRGPRX3 REV__ENSG00000179826|ENST00000621697|MRGPRX3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4063110351562 2 785.404047 1568.79354 NaN NaN NaN NaN NaN NaN NaN 13.219 1 12.098 11.598 12.598 -1.1206 0 0 0 0.23698 1 1650 1650 0.35063 0.043601 1 + 38802 18668 26005 26021 38142 38142 0.03189521198942202 RPRRRRRRRQE 11 Unmodified _RPRRRRRRRQE_ 0 0 0 ENST00000514738.5_1_5:31193871-31267519:+|nuORF ENST00000514738.5_1_5:31193871-31267519:+|nuORF ENST00000514738.5_1_5:31193871-31267519:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.272705078125 3 541.331739 1620.97339 0.29104 0.00015755 2.4898 0.0013478 2.7809 0.0015054 541.3323900456347 114.26 0.14223 114.26 114.19 114.33 0 5 3 2 0 0 0 0.96227 1 22469 22469 0.08335 0.08335 1 1059200 38803 10776 26006 26022 38143 38143 0.18773961250963112 RPRRRTTRRWK 11 Unmodified _RPRRRTTRRWK_ 0 0 0 nc|ENSG00000164542|Q8NCT3|MATCAP2 nc|ENSG00000164542|Q8NCT3|MATCAP2 nc|ENSG00000164542|Q8NCT3|MATCAP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6856689453125 3 523.653819 1567.93963 NaN NaN NaN NaN NaN NaN NaN 150.9 1 145.67 145.17 146.17 -5.2365 0 0 0 0.23698 1 29245 29245 1.1098 0.74308 1 38804 12425 26007 26023 38144 38144 0.17837539759170795 RPRRWLQLWRR 11 Unmodified _RPRRWLQLWRR_ 0 0 0 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2843627929688 3 541.658681 1621.95422 0.00045907 2.4866E-07 3.1834 0.0017243 3.1839 0.0017246 541.9947307598785 41.509 0.34908 38.858 38.72 39.069 -2.651 11 9 2 0 0 0 0.96227 1 7492 7492 0.094841 0.094841 1 671390 38805 6969 26008 26024 38145 38145 0.16811611907337465 RPSHFALK 8 Unmodified _RPSHFALK_ 0 0 0 REV__ENST00000518717.1_1_8:42330114-42396163:-|nuORF REV__ENST00000518717.1_1_8:42330114-42396163:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73321533203125 2 478.277244 954.539935 NaN NaN NaN NaN NaN NaN NaN 104.22 1 104.22 103.72 104.72 0 0 0 0 0.2343 1 20482 20482 0.0082765 0 1 + 38806 22608 26009 26025 38146 38146 0.060846170911418085 RPSNRSIS 8 Unmodified _RPSNRSIS_ 0 0 0 REV__ENST00000511316.1_1_4:174254289-174255443:-|nuORF REV__ENST00000511316.1_1_4:174254289-174255443:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.2060546875 3 306.170152 915.488627 NaN NaN NaN NaN NaN NaN NaN 83.843 1 80.144 79.644 80.644 -3.6985 0 0 0 0.21486 1 16013 16013 1.6526 0 1 + 38807 22549 26010 26026 38147 38147 0.02750248326435667 RPSSPAEERP 10 Unmodified _RPSSPAEERP_ 0 0 0 REV__ENST00000327359.7_1_14:105781694-105781805:-|nuORF REV__ENST00000327359.7_1_14:105781694-105781805:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1332092285156 3 375.859755 1124.55744 -0.10712 -4.0261E-05 -0.23281 -8.7505E-05 -0.33993 -0.00012777 375.8596175513248 22.553 0.80908 21.1 20.838 21.647 -1.4535 59 22 5 0 0 0 0.75765 1 3684 3684 3.3196 0 1 20887000 + 38808 20589 26011 26027 38148 38148 0.00013867835468772682 RPSSPAEERP 10 Unmodified _RPSSPAEERP_ 0 0 0 REV__ENST00000327359.7_1_14:105781694-105781805:-|nuORF REV__ENST00000327359.7_1_14:105781694-105781805:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.859755 1124.55744 -0.17107 -6.4298E-05 -0.09259 -3.4801E-05 -0.26366 -9.9099E-05 375.8597040337729 21.059 0.47923 21.059 20.851 21.33 0 -0.020569 0.00024141 NaN 3.3196 45 13 5 NaN NaN NaN NaN 0 NaN NaN 0 12134000 + 38809 20589 26011 26027 0.00013867835468772682 RPSSPAEERP 10 Unmodified _RPSSPAEERP_ 0 0 0 REV__ENST00000327359.7_1_14:105781694-105781805:-|nuORF REV__ENST00000327359.7_1_14:105781694-105781805:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.859755 1124.55744 0.43943 0.00016516 -0.75968 -0.00028553 -0.32025 -0.00012037 375.8594634938584 22.633 0.51165 21.08 20.826 21.338 -1.5532 0.00047895 -0.00051078 NaN 3.3196 50 14 6 NaN NaN NaN NaN 0 NaN NaN 0 22248000 + 38810 20589 26011 26027 0.00013867835468772682 RPTHTRFWRRR 11 Unmodified _RPTHTRFWRRR_ 0 0 0 REV__ENST00000574110.5_1_19:30433210-30433438:+|nuORF REV__ENST00000574110.5_1_19:30433210-30433438:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6954345703125 3 523.630903 1567.87088 NaN NaN NaN NaN NaN NaN NaN 147.65 1 142.49 141.99 142.99 -5.1557 0 0 0 0.23698 1 28572 28572 2.2527 1.2392 1 + 38811 23191 26012 26028 38149 38149 0.10965875459464769 RPTLLVAML 9 Unmodified _RPTLLVAML_ 0 0 0 REV__ENSG00000166153|ENST00000550587|DEPDC4 REV__ENSG00000166153|ENST00000550587|DEPDC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.2960205078125 2 507.312438 1012.61032 0.2018 0.00010238 0.052332 2.6549E-05 0.25413 0.00012892 507.3123225253716 140.54 0.86919 140.54 140.09 140.96 0 57 24 3 0 0 0 0.57447 1 28016 28016 14.838 0.25658 1 20581000 + 38812 17829 26013 26029 38150 38150 0.10452154364577382 RPTLMSRKY 9 Unmodified _RPTLMSRKY_ 0 0 0 REV__NEFM|p.A58T|1|0.41|ENSG00000104722|chr8:24913965-24913965|G/A|missense_variant REV__NEFM|p.A58T|1|0.41|ENSG00000104722|chr8:24913965-24913965|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3224487304688 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 69.083 1 65.692 65.192 66.192 -3.3903 0 0 0 0.23277 1 13056 13056 13.906 0.86358 1 + 38813 24353 26014 26030 38151 38151 0.058808696194319054 RPTPSPLMKP 10 Unmodified _RPTPSPLMKP_ 0 0 0 ENST00000531879.5_1_11:46367016-46400221:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-3|DGKZ ENST00000531879.5_1_11:46367016-46400221:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2126770019531 3 375.214593 1122.62195 NaN NaN NaN NaN NaN NaN NaN 38.522 1 36.081 35.581 36.581 -2.4419 0 0 0 2.8426 1 6858 6858 0.84494 0.77168 1 38814 10973;12380 26015 26031 38152 38152 0.06554351387921997 RPVAKGPGV 9 Unmodified _RPVAKGPGV_ 0 0 0 REV__ENSG00000117448|ENST00000351829|AKR1A1 REV__ENSG00000117448|ENST00000351829|AKR1A1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 440.7701416015625 2 440.771794 879.529036 NaN NaN NaN NaN NaN NaN NaN 64.887 1 61.84 61.34 62.34 -3.047 0 0 0 0.19512 1 12551 12551 12.241 0 1 + 38815 15520 26016 26032 38153 38153 0.08445214716857663 RPVAKGPGV 9 Unmodified _RPVAKGPGV_ 0 0 0 REV__ENSG00000117448|ENST00000351829|AKR1A1 REV__ENSG00000117448|ENST00000351829|AKR1A1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 441.2452392578125 2 440.771794 879.529036 NaN NaN NaN NaN NaN NaN NaN 64.922 1 61.875 61.375 62.375 -3.047 0 0 0 0.19657 1 12560 12560 4.897 0 1 + 38816 15520 26016 26032 38154 38154 0.08445214716857663 RPVEQFFKRYN 11 Unmodified _RPVEQFFKRYN_ 0 0 0 tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1 tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1 tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3971557617188 2 742.393867 1482.77318 NaN NaN NaN NaN NaN NaN NaN 151.39 1 146.21 145.71 146.71 -5.1759 0 0 0 0.22632 1 29343 29343 3.0723 2.8069 1 38817 26094 26017 26033 38155 38155 0.051106290201232696 RPVHLTQE 8 Unmodified _RPVHLTQE_ 0 0 0 SEC24B|p.N526H|1|0.19|ENSG00000138802|chr4:109506415-109506415|A/C|missense_variant SEC24B|p.N526H|1|0.19|ENSG00000138802|chr4:109506415-109506415|A/C|missense_variant SEC24B|p.N526H|1|0.19|ENSG00000138802|chr4:109506415-109506415|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2689514160156 2 490.269616 978.524678 NaN NaN NaN NaN NaN NaN NaN 164.17 1 159.13 158.63 159.63 -5.0446 0 0 0 0.23025 1 31998 31998 0.12286 0 1 38818 25650 26018 26034 38156 38156 0.03455705503267836 RPVLYFHIRWG 11 Unmodified _RPVLYFHIRWG_ 0 0 0 ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1 ENST00000472190.5_1_1:233765551-233807273:+|nuORF ENST00000472190.5_1_1:233765551-233807273:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7816162109375 3 481.938451 1442.79352 -1.4716 -0.00070922 -0.1465 -7.0604E-05 -1.6181 -0.00077983 481.9384682043555 16.92 0.17044 15.567 15.437 15.608 -1.3534 6 4 2 0 0 0 0.66234 1 2425 2425 0.50596 0 1 287800 38819 3949 26019 26035 38157 38157 0.08983844470571967 RPVLYFHIRWG 11 Unmodified _RPVLYFHIRWG_ 0 0 0 ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1 ENST00000472190.5_1_1:233765551-233807273:+|nuORF ENST00000472190.5_1_1:233765551-233807273:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 481.938451 1442.79352 -0.30607 -0.00014751 -1.4644 -0.00070576 -1.7705 -0.00085327 482.27209410869904 16.697 0.24626 15.481 15.355 15.601 -1.2159 -0.020393 -0.0009161 NaN 0.50596 12 6 3 NaN NaN NaN NaN 0 NaN NaN 0 450050 38820 3949 26019 26035 0.08983844470571967 RPVLYFHIRWG 11 Unmodified _RPVLYFHIRWG_ 0 0 0 ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1 ENST00000472190.5_1_1:233765551-233807273:+|nuORF ENST00000472190.5_1_1:233765551-233807273:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 481.938451 1442.79352 -0.45208 -0.00021787 -0.83343 -0.00040166 -1.2855 -0.00061954 481.9381161182573 16.728 0.16796 15.456 15.351 15.519 -1.2722 -0.045354 -3.8175E-06 NaN 0.50596 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 583130 38821 3949 26019 26035 0.08983844470571967 RPVMDQEYIYK 11 Unmodified _RPVMDQEYIYK_ 0 0 0 nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24365234375 3 481.242988 1440.70714 NaN NaN NaN NaN NaN NaN NaN 31.099 1 28.983 28.483 29.483 -2.1167 0 0 0 0.22632 1 5636 5636 3.0723 0 1 38822 5088 26020 26036 38158 38158 0.004410520630699466 RPVRLMKVFV 10 Unmodified _RPVRLMKVFV_ 0 0 0 ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000493368.5_1_9:37422741-37424891:+|nuORF;ENSG00000137106|ENST00000318158|GRHPR ENST00000377824.8_1_9:37422741-37431094:+|nuORF ENST00000377824.8_1_9:37422741-37431094:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7692260742188 2 622.886635 1243.75872 NaN NaN NaN NaN NaN NaN NaN 81.728 1 77.889 77.389 78.389 -3.8392 0 0 0 2.8426 1 15519 15519 0.0013812 0 1 38823 9269 26021 26037 38159 38159 0.14658885338303662 RPVRTRRASER 11 Unmodified _RPVRTRRASER_ 0 0 0 ENST00000264042.7_1_2:242295701-242312516:+|nuORF ENST00000264042.7_1_2:242295701-242312516:+|nuORF ENST00000264042.7_1_2:242295701-242312516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.9397277832031 3 461.939514 1382.79671 NaN NaN NaN NaN NaN NaN NaN 10.296 1 9.3919 8.8919 9.8919 -0.90401 0 0 0 0.23698 1 1276 1276 0.094841 0 1 38824 8332 26022 26038 38160 38160 0.12062487577304637 RPVTPAWSL 9 Unmodified _RPVTPAWSL_ 0 0 0 REV__ENST00000447416.5_3_22:25003936-25006345:+|nuORF REV__ENST00000447416.5_3_22:25003936-25006345:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 514.2564697265625 2 513.790184 1025.56581 -0.083074 -4.2683E-05 -3.5603 -0.0018292 -3.6434 -0.0018719 513.7886288798146 144.11 0.20564 139.44 139.33 139.54 -4.6694 7 5 2 0 0 0 0.58921 1 28541 28541 8.1555 0 1 1303200 + 38825 21770 26023 26039 38161 38161 0.05405466542742943 RPWDFQAEECA 11 Unmodified _RPWDFQAEECA_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 451.2308349609375 3 451.196038 1350.56629 NaN NaN NaN NaN NaN NaN NaN 62.217 1 58.978 58.478 59.478 -3.2395 0 0 0 0.22632 1 11662 11662 0.026206 0 1 38826 4452 26024 26040 38162 38162 -0.0949752659034857 RPWWPRRARRW 11 Unmodified _RPWWPRRARRW_ 0 0 0 REV__ENST00000409939.7_1_16:30381377-30381548:-|nuORF REV__ENST00000409939.7_1_16:30381377-30381548:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.97900390625 3 541.63951 1621.8967 0.31615 0.00017124 -0.16256 -8.805E-05 0.15358 8.3188E-05 541.6384809973387 146.55 0.17058 146.55 146.47 146.64 0 6 4 2 0 0 0 0.89134 1 29303 29303 0.094841 0 1 1413600 + 38827 21420 26025 26041 38163 38163 0.11062769701766229 RPYHFFIAYLD 11 Unmodified _RPYHFFIAYLD_ 0 0 0 REV__ENST00000280200.8_3_18:67531437-67531521:-|nuORF REV__ENST00000280200.8_3_18:67531437-67531521:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2447814941406 3 481.24695 1440.71902 NaN NaN NaN NaN NaN NaN NaN 85.468 1 85.468 84.968 85.968 0 0 0 0 0.22632 1 16680 16680 0.65807 0.54703 1 + 38828 20302 26026 26042 38164 38164 0.01629036868575895 RQAAAAAC 8 Unmodified _RQAAAAAC_ 0 0 0 nc|ENSG00000132153|Q7L2E3-2|DHX30;ENST00000470959.1_1_3:47868940-47872365:+|nuORF;ENST00000441384.5_1_3:47852163-47883242:+|nuORF;nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30 nc|ENSG00000132153|Q7L2E3-2|DHX30 nc|ENSG00000132153|Q7L2E3-2|DHX30 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21173095703125 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 102.53 1 102.53 102.03 103.03 0 0 0 0 0.23749 1 20140 20140 0.0082765 0.0082765 1 38829 12324 26027 26043 38165 38165 -0.024761260455761658 RQADPGFF 8 Unmodified _RQADPGFF_ 0 0 0 ENSG00000163344|ENST00000368467|PMVK ENSG00000163344|ENST00000368467|PMVK ENSG00000163344|ENST00000368467|PMVK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1551818847656 3 313.155732 936.445365 NaN NaN NaN NaN NaN NaN NaN 161.38 1 156.13 155.63 156.63 -5.2526 0 0 0 0.21486 1 31320 31320 0.45834 0 1 38830 5416 26028 26044 38166 38166 -0.025399414508569862 RQAECWAP 8 Unmodified _RQAECWAP_ 0 0 0 REV__nc|ENSG00000160783|Q6P1K2-3|PMF1 REV__nc|ENSG00000160783|Q6P1K2-3|PMF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7695007324219 2 480.721444 959.428335 0.050548 2.43E-05 -0.074123 -3.5632E-05 -0.023575 -1.1333E-05 480.72286192754564 136.62 0.95058 131.98 131.64 132.59 -4.6399 93 26 4 0 0 0 0.69031 1 27000 27000 15.847 0 1 21367000 + 38831 24120 26029 26045 38167 38167 -0.05300185328326279 RQAPPLQP 8 Unmodified _RQAPPLQP_ 0 0 0 REV__ENSG00000132911|ENST00000255262|NMUR2 REV__ENSG00000132911|ENST00000255262|NMUR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7631530761719 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 98.598 1 94.465 93.965 94.965 -4.1326 0 0 0 0.23749 1 19360 19360 0.0082765 0 1 + 38832 16140 26030 26046 38168 38168 0.051766243371730525 RQAPPLQP 8 Unmodified _RQAPPLQP_ 0 0 0 REV__ENSG00000132911|ENST00000255262|NMUR2 REV__ENSG00000132911|ENST00000255262|NMUR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75994873046875 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 157.61 1 152.82 152.32 153.32 -4.7885 0 0 0 0.2343 1 31346 31346 0.12286 0.049601 1 + 38833 16140 26030 26046 38169 38169 0.051766243371730525 RQAPPLQP 8 Unmodified _RQAPPLQP_ 0 0 0 REV__ENSG00000132911|ENST00000255262|NMUR2 REV__ENSG00000132911|ENST00000255262|NMUR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7633056640625 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 160.67 1 155.44 154.94 155.94 -5.2299 0 0 0 0.22934 1 31202 31202 0.12286 0.049601 1 + 38834 16140 26030 26046 38170 38170 0.051766243371730525 RQAWSKSG 8 Unmodified _RQAWSKSG_ 0 0 0 TPST2|p.N333Tfs*17|2|0.26|ENSG00000128294|chr22:26536333-26536333|G/-|frameshift_variant;ENSG00000128294|ENST00000338754|TPST2 TPST2|p.N333Tfs*17|2|0.26|ENSG00000128294|chr22:26536333-26536333|G/-|frameshift_variant TPST2|p.N333Tfs*17|2|0.26|ENSG00000128294|chr22:26536333-26536333|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2406311035156 2 460.240858 918.467164 0.032335 1.4882E-05 -1.7638 -0.00081176 -1.7314 -0.00079688 460.2398847957939 37.639 0.47937 35.291 35.099 35.578 -2.3479 19 13 2 0 0 0 8448 1 6669 6669 3.2813 0 1 657540 38835 3518 26031 26047 38171 38171 0.0046686329772001045 RQCARPTP 8 Unmodified _RQCARPTP_ 0 0 0 REV__ENST00000567427.1_1_16:1555444-1556512:+|nuORF REV__ENST00000567427.1_1_16:1555444-1556512:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650085449219 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 101.53 1 97.206 96.706 97.706 -4.3208 0 0 0 0.23899 1 19430 19430 1.3295 1.1227 1 + 38836 23130 26032 26048 38172 38172 0.004232097999192774 RQCPVIAE 8 Unmodified _RQCPVIAE_ 0 0 0 chr1:119803165-119803315|115|148.02|0.35|8.73|-|2|TE_info:ERVL-B4-int,ERVL-B4-int_dup124,ERVL,LTR,donor,+,119803315,119803584|REG4,None|4 chr1:119803165-119803315|115|148.02|0.35|8.73|-|2|TE_info:ERVL-B4-int,ERVL-B4-int_dup124,ERVL,LTR,donor,+,119803315,119803584|REG4,None|4 chr1:119803165-119803315|115|148.02|0.35|8.73|-|2|TE_info:ERVL-B4-int,ERVL-B4-int_dup124,ERVL,LTR,donor,+,119803315,119803584|REG4,None|4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2380065917969 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 60.388 1 57.455 56.955 57.955 -2.9333 0 0 0 0.21452 1 11618 11618 13.508 4.1604 1 38837 527 26033 26049 38173 38173 0.003732718485366604 RQCPVIAE 8 Unmodified _RQCPVIAE_ 0 0 0 chr1:119803165-119803315|115|148.02|0.35|8.73|-|2|TE_info:ERVL-B4-int,ERVL-B4-int_dup124,ERVL,LTR,donor,+,119803315,119803584|REG4,None|4 chr1:119803165-119803315|115|148.02|0.35|8.73|-|2|TE_info:ERVL-B4-int,ERVL-B4-int_dup124,ERVL,LTR,donor,+,119803315,119803584|REG4,None|4 chr1:119803165-119803315|115|148.02|0.35|8.73|-|2|TE_info:ERVL-B4-int,ERVL-B4-int_dup124,ERVL,LTR,donor,+,119803315,119803584|REG4,None|4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2415771484375 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 60.86 1 57.49 56.99 57.99 -3.3694 0 0 0 0.21452 1 11339 11339 13.508 0 1 38838 527 26033 26049 38174 38174 0.003732718485366604 RQDCVPFP 8 Unmodified _RQDCVPFP_ 0 0 0 ENST00000253496.3_1_5:176829150-176830562:-|nuORF ENST00000253496.3_1_5:176829150-176830562:-|nuORF ENST00000253496.3_1_5:176829150-176830562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.231201171875 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 6.8309 1 5.7863 5.2863 6.2863 -1.0446 0 0 0 0.21486 1 521 521 0.79363 0 1 38839 8240 26034 26050 38175 38175 -0.03307014668507691 RQEEEPALL 9 Unmodified _RQEEEPALL_ 0 0 0 REV__ENST00000262065.7_1_17:53491542-53499129:-|nuORF REV__ENST00000262065.7_1_17:53491542-53499129:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7879028320312 2 542.785296 1083.55604 0.20368 0.00011056 0.095383 5.1772E-05 0.29907 0.00016233 542.7852127795876 71.273 0.94194 71.273 70.8 71.742 0 84 26 5 0 0 0 0.25976 2 13770 13770;13821 27.129 19.005 1 40074000 + 38840 20193 26035 26051 38176;38177 38176 0.01760233746722406 RQEEEPALL 9 Unmodified _RQEEEPALL_ 0 0 0 REV__ENST00000262065.7_1_17:53491542-53499129:-|nuORF REV__ENST00000262065.7_1_17:53491542-53499129:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7797241210938 2 542.785296 1083.55604 0.15022 8.1538E-05 0.12407 6.7344E-05 0.27429 0.00014888 542.7851768188826 74.486 0.91499 71.121 70.675 71.59 -3.3643 102 25 6 0 0 0 0.25976 4 14468 14460;14468;14507;14552 32.616 15.479 1 32103000 + 38841 20193 26035 26051 38178;38179;38180;38181 38179 0.01760233746722406 RQEFRRQLRRW 11 Unmodified _RQEFRRQLRRW_ 0 0 0 ENST00000403729.6_1_4:80993792-80994179:-|nuORF ENST00000403729.6_1_4:80993792-80994179:-|nuORF ENST00000403729.6_1_4:80993792-80994179:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7732543945312 3 544.309829 1629.90766 0.33862 0.00018432 -2.5595 -0.0013931 -2.2208 -0.0012088 544.3080216441026 148.36 0.17554 148.36 148.29 148.47 0 6 4 2 0 0 0 0.96227 1 29706 29706 0.094841 0.011491 1 979580 38842 9525 26036 26052 38182 38182 0.11790127285394192 RQELRQRVR 9 Unmodified _RQELRQRVR_ 0 0 0 ENST00000492103.1_1_3:9822043-9829075:-|nuORF;ENSG00000171148|ENST00000301964|TADA3 ENST00000492103.1_1_3:9822043-9829075:-|nuORF ENST00000492103.1_1_3:9822043-9829075:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 414.2494201660156 3 414.249688 1239.72723 NaN NaN NaN NaN NaN NaN NaN 134.23 1 129.42 128.92 129.92 -4.8175 0 0 0 0.19636 1 25843 25843 0.20686 0.20348 1 38843 6127 26037 26053 38183 38183 0.11696028628534805 RQERPPVK 8 Unmodified _RQERPPVK_ 0 0 0 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 ENSG00000089289|ENST00000356413|IGBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0305480957031 3 337.201564 1008.58286 -2.2598 -0.00076202 2.0916 0.00070529 -0.16822 -5.6722E-05 337.20205327992 15.595 0.61891 14.241 14.097 14.716 -1.3534 21 17 2 0 0 0 1.0252 1 2176 2176 6.2058 0 1 384440 38844 1760 26038 26054 38184 38184 0.0789138714856108 RQFEMRRKLHY 11 Unmodified _RQFEMRRKLHY_ 0 0 0 ENSG00000231989|ENST00000522232|PPP1R2B ENSG00000231989|ENST00000522232|PPP1R2B ENSG00000231989|ENST00000522232|PPP1R2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2697143554688 3 521.949021 1562.82523 -0.037215 -1.9424E-05 -0.47847 -0.00024974 -0.51568 -0.00026916 522.2820122264648 47.786 0.13618 44.836 44.743 44.879 -2.9499 5 3 2 0 0 0 0.82353 2 8723 8723;8733 0.50596 0.051438 1 1079400 38845 7809 26039 26055 38185;38186 38185 0.06633469162261463 RQGCQYEFRVT 11 Unmodified _RQGCQYEFRVT_ 0 0 0 IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant;ENSG00000163395|ENST00000335211|IGFN1;ENST00000473483.1_1_1:201186566-201195005:+|nuORF;nc|ENSG00000163395|Q86VF2-3|IGFN1;nc|ENSG00000163395|Q86VF2-2|IGFN1;nc|ENSG00000163395|Q86VF2|IGFN1 IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 694.9093017578125 2 693.832785 1385.65102 0.73437 0.00050953 -0.33395 -0.00023171 0.40042 0.00027782 693.8323307778275 168.53 0.31653 163.65 163.47 163.79 -4.8821 25 8 4 0 0 0 0.80486 1 33194 33194 2.9952 0.26005 1 86770000 38846 5423 26040 26056 38187 38187 -0.026381560537856785 RQGCQYEFRVT 11 Unmodified _RQGCQYEFRVT_ 0 0 0 IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant;ENSG00000163395|ENST00000335211|IGFN1;ENST00000473483.1_1_1:201186566-201195005:+|nuORF;nc|ENSG00000163395|Q86VF2-3|IGFN1;nc|ENSG00000163395|Q86VF2-2|IGFN1;nc|ENSG00000163395|Q86VF2|IGFN1 IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 693.832785 1385.65102 1.0126 0.00070256 -0.69509 -0.00048228 0.31749 0.00022028 693.8321417390134 168.47 0.27214 163.68 163.52 163.79 -4.7898 0.025976 -0.00032197 NaN 2.9952 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 93168000 38847 5423 26040 26056 -0.026381560537856785 RQGCQYEFRVT 11 Unmodified _RQGCQYEFRVT_ 0 0 0 IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant;ENSG00000163395|ENST00000335211|IGFN1;ENST00000473483.1_1_1:201186566-201195005:+|nuORF;nc|ENSG00000163395|Q86VF2-3|IGFN1;nc|ENSG00000163395|Q86VF2-2|IGFN1;nc|ENSG00000163395|Q86VF2|IGFN1 IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 693.832785 1385.65102 0.42868 0.00029743 -0.40939 -0.00028405 0.019292 1.3386E-05 693.8323220315242 168.56 0.30952 163.63 163.48 163.79 -4.9295 -0.023244 7.4487E-05 NaN 2.9952 25 8 4 NaN NaN NaN NaN 0 NaN NaN 0 101130000 38848 5423 26040 26056 -0.026381560537856785 RQGCQYEFRVT 11 Unmodified _RQGCQYEFRVT_ 0 0 0 IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant;ENSG00000163395|ENST00000335211|IGFN1;ENST00000473483.1_1_1:201186566-201195005:+|nuORF;nc|ENSG00000163395|Q86VF2-3|IGFN1;nc|ENSG00000163395|Q86VF2-2|IGFN1;nc|ENSG00000163395|Q86VF2|IGFN1 IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 693.832785 1385.65102 0.73437 0.00050953 -0.33395 -0.00023171 0.40042 0.00027782 693.8323307778275 168.53 0.31653 163.65 163.47 163.79 -4.8821 -0.0027318 0.00017917 NaN 2.9952 25 8 4 NaN NaN NaN NaN 0 NaN NaN 0 86770000 38849 5423 26040 26056 -0.026381560537856785 RQHKILDNK 9 Unmodified _RQHKILDNK_ 0 0 0 REV__ENSG00000256223|ENST00000248211|ZNF10 REV__ENSG00000256223|ENST00000248211|ZNF10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3346557617188 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 47.655 1 44.713 44.213 45.213 -2.9421 0 0 0 0.19721 1 8692 8692 24.021 5.8856 1 + 38850 19862 26041 26057 38188 38188 0.08778730240078403 RQHRNRRRMRR 11 Unmodified _RQHRNRRRMRR_ 0 0 0 REV__ENST00000541683.1_1_11:61582434-61582803:-|nuORF REV__ENST00000541683.1_1_11:61582434-61582803:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2706909179688 3 541.313691 1620.91924 NaN NaN NaN NaN NaN NaN NaN 135.66 1 135.66 135.16 136.16 0 0 0 0 0.22632 1 26875 26875 0.026206 0.026206 1 + 38851 22867 26042 26058 38189 38189 0.1336204582771643 RQHRNRRRMRR 11 Unmodified _RQHRNRRRMRR_ 0 0 0 REV__ENST00000541683.1_1_11:61582434-61582803:-|nuORF REV__ENST00000541683.1_1_11:61582434-61582803:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2696533203125 3 541.313691 1620.91924 NaN NaN NaN NaN NaN NaN NaN 153.68 1 153.68 153.18 154.18 0 0 0 0 0.22632 1 30796 30796 0.094841 0 1 + 38852 22867 26042 26058 38190 38190 0.1336204582771643 RQHRNRRRMRR 11 Unmodified _RQHRNRRRMRR_ 0 0 0 REV__ENST00000541683.1_1_11:61582434-61582803:-|nuORF REV__ENST00000541683.1_1_11:61582434-61582803:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2673950195312 3 541.313691 1620.91924 NaN NaN NaN NaN NaN NaN NaN 154 1 154 153.5 154.5 0 0 0 0 0.22632 1 30863 30863 0.026206 0 1 + 38853 22867 26042 26058 38191 38191 0.1336204582771643 RQISGVHKL 9 Unmodified _RQISGVHKL_ 0 0 0 ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4|p.P1123Lfs*37|1|0.47|ENSG00000132470|chr17:75750158-75750158|C/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.8717041015625 3 346.545331 1036.61416 0.30182 0.00010459 -0.9776 -0.00033878 -0.67578 -0.00023419 346.5450270521939 22.087 0.27916 20.613 20.484 20.763 -1.4742 16 7 3 0 0 0 0.15889 1 3752 3752 22.736 16.106 1 564260 38854 3731 26043 26059 38192 38192 0.09731960182671173 RQISGVHKL 9 Unmodified _RQISGVHKL_ 0 0 0 ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4|p.P1123Lfs*37|1|0.47|ENSG00000132470|chr17:75750158-75750158|C/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 346.545331 1036.61416 -0.35104 -0.00012165 -2.2853 -0.00079197 -2.6364 -0.00091362 346.5451225207434 20.482 0.24648 20.482 20.351 20.597 0 -0.072249 -0.0011895 NaN 22.736 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 181380 38855 3731 26043 26059 0.09731960182671173 RQISGVHKL 9 Unmodified _RQISGVHKL_ 0 0 0 ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4|p.P1123Lfs*37|1|0.47|ENSG00000132470|chr17:75750158-75750158|C/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 346.545331 1036.61416 -0.14326 -4.9645E-05 -1.0739 -0.00037216 -1.2172 -0.00042181 346.54535479149087 21.976 0.63048 20.568 20.325 20.955 -1.4083 0.013414 6.991E-05 NaN 22.736 20 17 2 NaN NaN NaN NaN 0 NaN NaN 0 881520 38856 3731 26043 26059 0.09731960182671173 RQITKRKRRKF 11 Unmodified _RQITKRKRRKF_ 0 0 0 REV__nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3 REV__nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 506.325927734375 3 506.32682 1515.95863 NaN NaN NaN NaN NaN NaN NaN 169.54 1 164.61 164.11 165.11 -4.9295 0 0 0 0.22632 1 33481 33481 0.50596 0 1 + 38857 17057 26044 26060 38193 38193 0.22129076330224962 RQIWRRRRKMR 11 Unmodified _RQIWRRRRKMR_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7678833007812 3 547.998821 1640.97463 NaN NaN NaN NaN NaN NaN NaN 111.52 1 111.52 111.02 112.02 0 0 0 0 0.23698 1 21937 21937 0.094841 0 1 + 38858 20142 26045 26061 38194 38194 0.17978459295477478 RQKMARYKR 9 Unmodified _RQKMARYKR_ 0 0 0 REV__ENST00000555711.5_1_12:25357018-25357243:+|nuORF REV__ENST00000555711.5_1_12:25357018-25357243:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 412.93536376953125 3 412.908386 1235.70333 NaN NaN NaN NaN NaN NaN NaN 9.5289 1 9.5289 9.0289 10.029 0 0 0 0 0.23508 1 1111 1111 0.23584 0.076522 1 + 38859 19599 26046 26062 38195 38195 0.09490471870526562 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.1501770019531 4 362.986901 1447.9185 0.17781 6.4544E-05 -0.32294 -0.00011722 -0.14513 -5.268E-05 362.98666504957026 104.29 2.1462 99.942 99.001 101.15 -4.346 143 61 4 0 0 0 0.91149 1 19834 19834 0 0 1 9461300 + 38860 15082 26047 26063 38196 38196 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 362.986901 1447.9185 -0.025968 -9.4261E-06 -0.21094 -7.6568E-05 -0.23691 -8.5994E-05 363.2375924364623 103.81 1.0931 99.752 99.138 100.23 -4.0543 -0.094863 9.8782E-05 NaN 0 71 30 3 NaN NaN NaN NaN 0 NaN NaN 0 5587000 + 38861 15082 26047 26063 0.21245574450313143 RQKRRRRRMLW 11 Unmodified _RQKRRRRRMLW_ 0 0 0 REV__ENST00000579674.1_1_17:27898877-27899117:+|nuORF REV__ENST00000579674.1_1_17:27898877-27899117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7723999023438 3 547.998821 1640.97463 NaN NaN NaN NaN NaN NaN NaN 80.799 1 76.96 76.46 77.46 -3.8392 0 0 0 0.22632 1 15338 15338 0.58532 0.58532 1 + 38862 17937 26048 26064 38197 38197 0.17978459295500215 RQKRRRRRMLW 11 Unmodified _RQKRRRRRMLW_ 0 0 0 REV__ENST00000579674.1_1_17:27898877-27899117:+|nuORF REV__ENST00000579674.1_1_17:27898877-27899117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77197265625 3 547.998821 1640.97463 NaN NaN NaN NaN NaN NaN NaN 38.327 1 35.922 35.422 36.422 -2.4049 0 0 0 0.23698 1 6815 6815 0.50596 0.50596 1 + 38863 17937 26048 26064 38198 38198 0.17978459295500215 RQKTRAYHRLK 11 Unmodified _RQKTRAYHRLK_ 0 0 0 ENST00000482967.5_1_20:31946851-31989286:-|nuORF;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000482967.5_1_20:31946851-31989286:-|nuORF ENST00000482967.5_1_20:31946851-31989286:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 728.8236694335938 2 728.934025 1455.8535 NaN NaN NaN NaN NaN NaN NaN 169.29 1 169.29 168.79 169.79 0 0 0 0 0.22632 1 34738 34738 0.2986 0 1 38864 2062 26049 26065 38199 38199 0.14380535133841477 RQLEKLKEV 9 Unmodified _RQLEKLKEV_ 0 0 0 ENST00000345117.2_1_8:42693107-42698298:-|nuORF;ENSG00000131931|ENST00000254250|THAP1 ENST00000345117.2_1_8:42693107-42698298:-|nuORF ENST00000345117.2_1_8:42693107-42698298:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2213439941406 3 381.567912 1141.68191 -0.083405 -3.1825E-05 -0.19051 -7.2692E-05 -0.27391 -0.00010452 381.5678029724527 28.421 0.41866 28.421 28.18 28.598 0 28 11 3 0 0 0 0.27979 1 5065 5065 48.073 11.678 1 4033000 38865 3699 26050 26066 38200 38200 0.11673365322781137 RQLEKLKEV 9 Unmodified _RQLEKLKEV_ 0 0 0 ENST00000345117.2_1_8:42693107-42698298:-|nuORF;ENSG00000131931|ENST00000254250|THAP1 ENST00000345117.2_1_8:42693107-42698298:-|nuORF ENST00000345117.2_1_8:42693107-42698298:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.205810546875 3 381.567912 1141.68191 0.23509 8.9703E-05 -0.66497 -0.00025373 -0.42988 -0.00016403 381.5675977540193 30.479 0.56087 28.362 28.084 28.645 -2.1167 36 15 3 0 0 0 0.17363 1 5537 5537 62.869 7.62 1 3004500 38866 3699 26050 26066 38201 38201 0.11673365322781137 RQLEKLKEV 9 Unmodified _RQLEKLKEV_ 0 0 0 ENST00000345117.2_1_8:42693107-42698298:-|nuORF;ENSG00000131931|ENST00000254250|THAP1 ENST00000345117.2_1_8:42693107-42698298:-|nuORF ENST00000345117.2_1_8:42693107-42698298:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2057189941406 3 381.567912 1141.68191 0.32715 0.00012483 -0.63905 -0.00024384 -0.31191 -0.00011901 381.5676406509685 30.346 0.48988 28.453 28.171 28.661 -1.8928 31 13 3 0 0 0 0.081606 1 5218 5218 81.915 8.7189 1 3191100 38867 3699 26050 26066 38202 38202 0.11673365322781137 RQLEKLKEV 9 Unmodified _RQLEKLKEV_ 0 0 0 ENST00000345117.2_1_8:42693107-42698298:-|nuORF;ENSG00000131931|ENST00000254250|THAP1 ENST00000345117.2_1_8:42693107-42698298:-|nuORF ENST00000345117.2_1_8:42693107-42698298:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2124328613281 3 381.567912 1141.68191 -0.13334 -5.0877E-05 -0.22284 -8.5029E-05 -0.35618 -0.00013591 381.5677908021237 30.456 0.56346 28.381 28.146 28.71 -2.0743 41 15 4 0 0 0 0.73584 1 5198 5198 21.799 7.5813 1 2719200 38868 3699 26050 26066 38203 38203 0.11673365322781137 RQLIRLKRKPE 11 Unmodified _RQLIRLKRKPE_ 0 0 0 REV__ITPKB|p.A127P|1|0.09|ENSG00000143772|chr1:226737080-226737080|C/G|missense_variant REV__ITPKB|p.A127P|1|0.09|ENSG00000143772|chr1:226737080-226737080|C/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2109375 4 359.984764 1435.90995 0.33879 0.00012196 0.40994 0.00014757 0.74874 0.00026953 359.98434184897536 90.753 0.52077 86.709 86.548 87.069 -4.0443 19 14 2 0 0 0 0.66298 1 17278 17278 0 0 1 1205000 + 38869 23685 26051 26067 38204 38204 0.20943162970502271 RQLKRLESV 9 Unmodified _RQLKRLESV_ 0 0 0 nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3 nc|ENSG00000103222|P33527-8|ABCC1;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENST00000502426.5_1_17:48736553-48755440:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.8397521972656 3 376.899773 1127.67749 0.10371 3.9088E-05 0.51108 0.00019263 0.61479 0.00023171 376.8996112684968 25.751 0.41218 24.116 23.926 24.338 -1.6347 19 11 2 0 0 0 0.27464 1 4258 4258 29.082 16.841 1 657930 38870 2497;2175 26052 26068 38205 38205 0.11875900899872249 RQLKRLESV 9 Unmodified _RQLKRLESV_ 0 0 0 nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3 nc|ENSG00000103222|P33527-8|ABCC1;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENST00000502426.5_1_17:48736553-48755440:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 377.1643371582031 3 376.899773 1127.67749 -0.71669 -0.00027012 0.48386 0.00018237 -0.23283 -8.7753E-05 376.89990947779694 26.099 0.41535 24.177 23.953 24.368 -1.9222 17 11 2 0 0 0 0.27464 1 4301 4301 29.082 16.841 1 593700 38871 2497;2175 26052 26068 38206 38206 0.11875900899872249 RQLKRLESV 9 Unmodified _RQLKRLESV_ 0 0 0 nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3 nc|ENSG00000103222|P33527-8|ABCC1;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENST00000502426.5_1_17:48736553-48755440:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 376.899773 1127.67749 -0.1187 -4.4738E-05 3.1277 0.0011788 3.009 0.0011341 377.2359076950145 24.125 0.26854 24.125 23.965 24.234 0 -0.01447 0.0025519 NaN 29.082 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 453520 38872 2497;2175 26052 26068 0.11875900899872249 RQLLDKRTY 9 Unmodified _RQLLDKRTY_ 0 0 0 REV__ENSG00000169519|ENST00000407364|METTL15 REV__ENSG00000169519|ENST00000407364|METTL15 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 398.2333679199219 3 398.231412 1191.67241 NaN NaN NaN NaN NaN NaN NaN 159.61 1 154.34 153.84 154.84 -5.2748 0 0 0 0.23508 1 30982 30982 2.7352 0 1 + 38873 18108 26053 26069 38207 38207 0.08423597037290165 RQLLKELGL 9 Unmodified _RQLLKELGL_ 0 0 0 REV__ENSG00000284024|ENST00000640019|MSANTD7 REV__ENSG00000284024|ENST00000640019|MSANTD7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5636291503906 3 357.229119 1068.66553 -0.38563 -0.00013776 0.20553 7.3422E-05 -0.18009 -6.4335E-05 357.22921138194454 71.328 0.38633 71.328 71.142 71.529 0 22 10 3 0 0 0 0.45059 1 13814 13814 22.658 3.0321 1 2403300 + 38874 19963 26054 26070 38208 38208 0.13394284156697722 RQLLKELGL 9 Unmodified _RQLLKELGL_ 0 0 0 REV__ENSG00000284024|ENST00000640019|MSANTD7 REV__ENSG00000284024|ENST00000640019|MSANTD7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 357.229119 1068.66553 -0.38563 -0.00013776 0.20553 7.3422E-05 -0.18009 -6.4335E-05 357.22921138194454 71.328 0.38633 71.328 71.142 71.529 0 0.10615 0.00017421 NaN 22.658 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2403300 + 38875 19963 26054 26070 0.13394284156697722 RQLLKELGL 9 Unmodified _RQLLKELGL_ 0 0 0 REV__ENSG00000284024|ENST00000640019|MSANTD7 REV__ENSG00000284024|ENST00000640019|MSANTD7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 357.229119 1068.66553 0.16559 5.9154E-05 -0.53935 -0.00019267 -0.37376 -0.00013352 357.22887219016974 74.89 0.52331 71.213 70.9 71.423 -3.6764 -0.0085219 -0.00062408 NaN 22.658 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 913500 + 38876 19963 26054 26070 0.13394284156697722 RQLLKELGL 9 Unmodified _RQLLKELGL_ 0 0 0 REV__ENSG00000284024|ENST00000640019|MSANTD7 REV__ENSG00000284024|ENST00000640019|MSANTD7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.229119 1068.66553 -0.3662 -0.00013082 0.21234 7.5855E-05 -0.15386 -5.4963E-05 357.2291410594959 74.842 0.58881 71.248 70.884 71.473 -3.594 0.026421 0.00018151 NaN 22.658 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1133000 + 38877 19963 26054 26070 0.13394284156697722 RQLQGLKG 8 Unmodified _RQLQGLKG_ 0 0 0 nc|ENSG00000114805|Q4KWH8-3|PLCH1;nc|ENSG00000114805|Q4KWH8-4|PLCH1;PLCH1|p.L1123Qfs*10|1|0.11|ENSG00000114805|chr3:155482680-155482683|ACAA/-|frameshift_variant;PLCH1|p.Q1461Sfs*24|1|0.37|ENSG00000114805|chr3:155481669-155481669|G/-|frameshift_variant;nc|ENSG00000114805|Q4KWH8-2|PLCH1;ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1 nc|ENSG00000114805|Q4KWH8-3|PLCH1 nc|ENSG00000114805|Q4KWH8-3|PLCH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.2508850097656 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 74.453 1 71.088 70.588 71.588 -3.3643 0 0 0 0.2343 1 14525 14525 1.7423 0 1 38878 2812 26055 26071 38209 38209 0.08152313228526964 RQLRQYHARWR 11 Unmodified _RQLRQYHARWR_ 0 0 0 REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.391357421875 2 785.434724 1568.85489 NaN NaN NaN NaN NaN NaN NaN 147.69 1 142.53 142.03 143.03 -5.1557 0 0 0 0.22632 1 28582 28582 0.50596 0 1 + 38879 13614 26056 26072 38210 38210 0.09322169222559751 RQNQRRQFQ 9 Unmodified _RQNQRRQFQ_ 0 0 0 REV__ENST00000476153.6_1_1:205492708-205496295:+|nuORF REV__ENST00000476153.6_1_1:205492708-205496295:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7708129882812 2 630.837051 1259.65955 NaN NaN NaN NaN NaN NaN NaN 66.304 1 62.808 62.308 63.308 -3.4965 0 0 0 0.23508 1 12424 12424 7.2892 0.56607 1 + 38880 13354 26057 26073 38211 38211 0.04010578697761957 RQPGKREP 8 Unmodified _RQPGKREP_ 0 0 0 ENSG00000182170|ENST00000332314|MRGPRG ENSG00000182170|ENST00000332314|MRGPRG ENSG00000182170|ENST00000332314|MRGPRG MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1860046386719 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 88.67 1 84.878 84.378 85.378 -3.7926 0 0 0 0.21486 1 17349 17349 1.6526 0 1 38881 6769 26058 26074 38212 38212 0.05130527597418677 RQPLLKVKL 9 Unmodified _RQPLLKVKL_ 0 0 0 REV__nc|ENSG00000173157|P59510-2|ADAMTS20 REV__nc|ENSG00000173157|P59510-2|ADAMTS20 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7798461914062 2 547.874051 1093.73355 NaN NaN NaN NaN NaN NaN NaN 12.065 1 10.936 10.436 11.436 -1.1293 0 0 0 0.19624 1 1461 1461 0 0 1 + 38882 24173 26059 26075 38213 38213 0.19043153807365343 RQPMRSGP 8 Unmodified _RQPMRSGP_ 0 0 0 REV__ENST00000417913.1_1_X:153713880-153714888:-|nuORF REV__ENST00000417913.1_1_X:153713880-153714888:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.164794921875 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 114.15 1 109.59 109.09 110.09 -4.555 0 0 0 0.21486 1 21915 21915 1.4819 0 1 + 38883 21478 26060 26076 38214 38214 0.004232097999306461 RQPQRWWRRPR 11 Unmodified _RQPQRWWRRPR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2747802734375 3 541.306419 1620.89743 NaN NaN NaN NaN NaN NaN NaN 120.99 1 120.99 120.49 121.49 0 0 0 0 0.22632 1 23849 23849 0.0059557 0.0053913 1 + 38884 21016 26061 26077 38215 38215 0.1118156435079527 RQPQRWWRRPR 11 Unmodified _RQPQRWWRRPR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2743530273438 3 541.306419 1620.89743 NaN NaN NaN NaN NaN NaN NaN 130.56 1 125.79 125.29 126.29 -4.7725 0 0 0 0.22632 1 25129 25129 0.00056442 0 1 + 38885 21016 26061 26077 38216 38216 0.1118156435079527 RQPVVIYS 8 Unmodified _RQPVVIYS_ 0 0 0 nc|ENSG00000095321|P43155-3|CRAT;nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT nc|ENSG00000095321|P43155-3|CRAT nc|ENSG00000095321|P43155-3|CRAT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2438049316406 2 481.276909 960.539266 NaN NaN NaN NaN NaN NaN NaN 176.51 1 171.72 171.22 172.22 -4.7898 0 0 0 0.21486 1 36093 36093 2.5775 0 1 38886 1857 26062 26078 38217 38217 0.057417776514284924 RQPVVIYS 8 Unmodified _RQPVVIYS_ 0 0 0 nc|ENSG00000095321|P43155-3|CRAT;nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT nc|ENSG00000095321|P43155-3|CRAT nc|ENSG00000095321|P43155-3|CRAT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2432861328125 2 481.276909 960.539266 NaN NaN NaN NaN NaN NaN NaN 176.49 1 171.59 171.09 172.09 -4.9008 0 0 0 0.21486 1 35188 35188 2.5775 0 1 38887 1857 26062 26078 38218 38218 0.057417776514284924 RQQPKSLKVR 10 Unmodified _RQQPKSLKVR_ 0 0 0 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-3|TAOK2;ENSG00000149930|ENST00000308893|TAOK2 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 413.93212890625 3 413.926322 1238.75714 NaN NaN NaN NaN NaN NaN NaN 10.048 1 8.9815 8.4815 9.4815 -1.0664 0 0 0 0.22588 1 1065 1065 0.15932 0 1 38888 4817 26063 26079 38219 38219 0.1473096757388248 RQQQLRPR 8 Unmodified _RQQQLRPR_ 0 0 0 REV__ENST00000372725.5_1_10:76585359-76602521:+|nuORF REV__ENST00000372725.5_1_10:76585359-76602521:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2646484375 2 541.320506 1080.62646 NaN NaN NaN NaN NaN NaN NaN 12.07 1 10.949 10.449 11.449 -1.1206 0 0 0 0.2396 1 1417 1417 0.0082765 0 1 + 38889 21034 26064 26080 38220 38220 0.0893699664570704 RQQQQHEK 8 Unmodified _RQQQQHEK_ 0 0 0 REV__ENSG00000204442|ENST00000375915|NALF1 REV__ENSG00000204442|ENST00000375915|NALF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2775268554688 2 541.278503 1080.54245 NaN NaN NaN NaN NaN NaN NaN 58.24 1 55.33 54.83 55.83 -2.9105 0 0 0 0.2343 1 11184 11184 0.12286 0 1 + 38890 19536 26065 26081 38221 38221 0.005404207581477749 RQQRREERRQQ 11 Unmodified _RQQRREERRQQ_ 0 0 0 ENSG00000084092|ENST00000264230|NOA1 ENSG00000084092|ENST00000264230|NOA1 ENSG00000084092|ENST00000264230|NOA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.696044921875 3 523.952482 1568.83562 -0.53383 -0.0002797 0.33078 0.00017331 -0.20304 -0.00010639 523.9515203839875 46.942 0.23907 44 43.827 44.066 -2.9421 8 6 2 0 0 0 0.89099 1 8522 8522 0.58532 0.55911 1 733450 38891 1663 26066 26082 38222 38222 0.073951681410108 RQQRRVRRGRR 11 Unmodified _RQQRRVRRGRR_ 0 0 0 ENST00000525281.5_1_10:4887971-4888256:+|nuORF ENST00000525281.5_1_10:4887971-4888256:+|nuORF ENST00000525281.5_1_10:4887971-4888256:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 508.2996520996094 3 508.649068 1522.92537 -0.28055 -0.0001427 -0.87674 -0.00044595 -1.1573 -0.00058865 508.9820386645174 145.18 0.17441 140.12 139.97 140.15 -5.0671 6 4 2 0 0 0 0.89074 1 28036 28036 1.4551 1.1565 1 5424200 38892 10891 26067 26083 38223 38223 0.18482887330901576 RQRAARDL 8 Unmodified _RQRAARDL_ 0 0 0 REV__ENSG00000106400|ENST00000305105|ZNHIT1 REV__ENSG00000106400|ENST00000305105|ZNHIT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 329.01275634765625 3 329.19318 984.55771 -0.34722 -0.0001143 -1.3204 -0.00043468 -1.6676 -0.00054898 329.19306799683096 109.37 1.5738 109.37 108.31 109.88 0 60 44 3 0 0 0 1.0277 1 21425 21425 0 0 1 5489000 + 38893 15050 26068 26084 38224 38224 0.06481332345992996 RQRAARDL 8 Unmodified _RQRAARDL_ 0 0 0 REV__ENSG00000106400|ENST00000305105|ZNHIT1 REV__ENSG00000106400|ENST00000305105|ZNHIT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 329.0217590332031 3 329.19318 984.55771 -0.11911 -3.921E-05 -1.2482 -0.00041091 -1.3674 -0.00045012 329.19310187439754 113.29 1.2949 109.01 108.05 109.34 -4.2725 61 36 3 0 0 0 1.0277 1 21751 21751 0 0 1 3152900 + 38894 15050 26068 26084 38225 38225 0.06481332345992996 RQRKCKYR 8 Unmodified _RQRKCKYR_ 0 0 0 REV__ENSG00000183072|ENST00000329198|NKX2-5 REV__ENSG00000183072|ENST00000329198|NKX2-5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 569.32275390625 2 569.324734 1136.63491 NaN NaN NaN NaN NaN NaN NaN 169.5 1 164.63 164.13 165.13 -4.873 0 0 0 0.21486 1 33479 33479 10.824 1.4408 1 + 38895 18818 26069 26085 38226 38226 0.07206227290680545 RQRKHKLI 8 Unmodified _RQRKHKLI_ 0 0 0 REV__ESR1|p.M264I|1|0.2|ENSG00000091831|chr6:151944204-151944204|G/T|missense_variant REV__ESR1|p.M264I|1|0.2|ENSG00000091831|chr6:151944204-151944204|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017822265625 3 360.23672 1077.68833 NaN NaN NaN NaN NaN NaN NaN 87.913 1 87.913 87.413 88.413 0 0 0 0 0.21486 1 17155 17155 0.40072 0 1 + 38896 23504 26070 26086 38227 38227 0.15259348064842015 RQRKHKLI 8 Unmodified _RQRKHKLI_ 0 0 0 REV__ESR1|p.M264I|1|0.2|ENSG00000091831|chr6:151944204-151944204|G/T|missense_variant REV__ESR1|p.M264I|1|0.2|ENSG00000091831|chr6:151944204-151944204|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2090759277344 3 360.23672 1077.68833 NaN NaN NaN NaN NaN NaN NaN 12.884 1 11.755 11.255 12.255 -1.1293 0 0 0 0.2396 1 1621 1621 0.12286 0 1 + 38897 23504 26070 26086 38228 38228 0.15259348064842015 RQRKRERKKKR 11 Unmodified _RQRKRERKKKR_ 0 0 0 ENST00000543442.1_1_12:67660488-67660587:-|nuORF ENST00000543442.1_1_12:67660488-67660587:-|nuORF ENST00000543442.1_1_12:67660488-67660587:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3865356445312 2 785.005848 1567.99714 NaN NaN NaN NaN NaN NaN NaN 169.99 1 169.99 169.49 170.49 0 0 0 0 0.22632 1 34924 34924 0 0 1 38898 11101 26071 26087 38229 38229 0.23586381964742031 RQRKRERKKKR 11 Unmodified _RQRKRERKKKR_ 0 0 0 ENST00000543442.1_1_12:67660488-67660587:-|nuORF ENST00000543442.1_1_12:67660488-67660587:-|nuORF ENST00000543442.1_1_12:67660488-67660587:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3865356445312 2 785.005848 1567.99714 NaN NaN NaN NaN NaN NaN NaN 169.99 1 169.99 169.49 170.49 0 0 0 0 0.23698 1 34925 34925 0 0 1 38899 11101 26071 26087 38230 38230 0.23586381964742031 RQRLKRMRLIF 11 Unmodified _RQRLKRMRLIF_ 0 0 0 REV__ENST00000435791.1_3_6:169652085-169652226:-|nuORF REV__ENST00000435791.1_3_6:169652085-169652226:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.7763366699219 3 506.317156 1515.92964 -0.070944 -3.592E-05 -0.66874 -0.00033859 -0.73968 -0.00037451 506.6503425847517 133.69 0.21774 129.05 128.99 129.21 -4.6399 6 5 2 0 0 0 0.89134 1 26362 26362 0.026206 0 1 599470 + 38900 21661 26072 26088 38231 38231 0.1923121570962394 RQRLRLRQRQR 11 Unmodified _RQRLRLRQRQR_ 0 0 0 CHRNB2|p.R365Q|1|0.42|ENSG00000160716|chr1:154571917-154571917|G/A|missense_variant CHRNB2|p.R365Q|1|0.42|ENSG00000160716|chr1:154571917-154571917|G/A|missense_variant CHRNB2|p.R365Q|1|0.42|ENSG00000160716|chr1:154571917-154571917|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2817993164062 3 522.660974 1564.96109 0.27555 0.00014402 3.8599 0.0020174 4.1355 0.0021614 522.9968106249588 135.94 0.28592 131.11 130.91 131.2 -4.8307 10 7 2 0 0 0 0.96227 1 26162 26162 0.08335 0.08335 1 2914500 38901 553 26073 26089 38232 38232 0.20120924787875083 RQRMERRL 8 Unmodified _RQRMERRL_ 0 0 0 ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3 ENSG00000146197|ENST00000274938|SCUBE3 ENSG00000146197|ENST00000274938|SCUBE3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 382.1858825683594 3 382.220852 1143.64073 NaN NaN NaN NaN NaN NaN NaN 112.75 1 108.23 107.73 108.73 -4.5259 0 0 0 0.21486 1 21644 21644 3.5965 0.60125 1 38902 4643 26074 26090 38233 38233 0.0746532580233179 RQRPFSFG 8 Unmodified _RQRPFSFG_ 0 0 0 REV__ENSG00000177839|ENST00000316105|PCDHB9 REV__ENSG00000177839|ENST00000316105|PCDHB9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 497.4491882324219 2 497.764501 993.514448 -1.7793 -0.00088567 1.039 0.00051719 -0.74027 -0.00036848 497.76503042832417 14.675 0.3678 13.465 13.315 13.683 -1.2106 14 10 2 0 0 0 0.89951 1 1939 1939 0 0 1 234070 + 38903 18578 26075 26091 38234 38234 0.017431425687163937 RQRPVEEFLAK 11 Unmodified _RQRPVEEFLAK_ 0 0 0 REV__ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant REV__ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2335510253906 3 458.261371 1371.76228 NaN NaN NaN NaN NaN NaN NaN 87.423 1 83.696 83.196 84.196 -3.727 0 0 0 0.22632 1 17095 17095 5.4027 5.2307 1 + 38904 13147 26076 26092 38235 38235 0.09127226645841802 RQRPWFPRRRR 11 Unmodified _RQRPWFPRRRR_ 0 0 0 ENST00000453401.6_1_14:51288712-51297780:-|nuORF ENST00000453401.6_1_14:51288712-51297780:-|nuORF ENST00000453401.6_1_14:51288712-51297780:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 537.6497192382812 3 537.650297 1609.92906 NaN NaN NaN NaN NaN NaN NaN 170.96 1 170.96 170.46 171.46 0 0 0 0 0.22632 1 35186 35186 0.50596 0.41111 1 38905 10005 26077 26093 38236 38236 0.14849557104730593 RQRQREERQRK 11 Unmodified _RQRQREERQRK_ 0 0 0 REV__ENST00000467214.1_1_10:6146929-6148209:+|nuORF REV__ENST00000467214.1_1_10:6146929-6148209:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3973388671875 2 785.443277 1568.872 NaN NaN NaN NaN NaN NaN NaN 156.34 1 151.05 150.55 151.55 -5.2854 0 0 0 0.22632 1 30330 30330 0.00056442 0 1 + 38906 16212 26078 26094 38237 38237 0.11032045037723037 RQRQRLRLRQR 11 Unmodified _RQRQRLRLRQR_ 0 0 0 REV__CHRNB2|p.R365Q|1|0.42|ENSG00000160716|chr1:154571917-154571917|G/A|missense_variant REV__CHRNB2|p.R365Q|1|0.42|ENSG00000160716|chr1:154571917-154571917|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2765502929688 3 522.660974 1564.96109 -0.62823 -0.00032835 3.7651 0.0019679 3.1369 0.0016395 522.9971558617164 38.927 0.17611 36.485 36.373 36.549 -2.4419 6 4 2 0 0 0 0.96228 1 6939 6939 0 0 1 637050 + 38907 13432 26079 26095 38238 38238 0.2012092478789782 RQRQRQWQWWA 11 Unmodified _RQRQRQWQWWA_ 0 0 0 ENST00000247706.3_1_19:17411946-17414055:-|nuORF ENST00000247706.3_1_19:17411946-17414055:-|nuORF ENST00000247706.3_1_19:17411946-17414055:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7874755859375 3 543.61503 1627.82326 NaN NaN NaN NaN NaN NaN NaN 44.913 1 42.12 41.62 42.62 -2.7923 0 0 0 0.22632 1 8144 8144 0 0 1 38908 8211 26080 26096 38239 38239 0.03446176468651174 RQRRERRFRRY 11 Unmodified _RQRRERRFRRY_ 0 0 0 nc|ENSG00000204498|Q9UBC1-2|NFKBIL1;nc|ENSG00000204498|Q9UBC1-3|NFKBIL1;ENSG00000204498|ENST00000376148|NFKBIL1 nc|ENSG00000204498|Q9UBC1-2|NFKBIL1 nc|ENSG00000204498|Q9UBC1-2|NFKBIL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 560.326171875 3 560.324361 1677.95125 NaN NaN NaN NaN NaN NaN NaN 168.18 1 163.23 162.73 163.73 -4.948 0 0 0 0.22632 1 33142 33142 0.00056442 0.00056442 1 38909 7583 26081 26097 38240 38240 0.13939736782504042 RQRRQGRRRW 10 Unmodified _RQRRQGRRRW_ 0 0 0 ENST00000530637.1_1_8:145690446-145690834:-|nuORF ENST00000530637.1_1_8:145690446-145690834:-|nuORF ENST00000530637.1_1_8:145690446-145690834:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 728.064453125 2 727.924858 1453.83516 NaN NaN NaN NaN NaN NaN NaN 170.49 1 165.62 165.12 166.12 -4.873 0 0 0 2.8426 1 33741 33741 0.013265 0 1 38910 10957 26082 26098 38241 38241 0.1263983800247388 RQRSRRRRRRS 11 Unmodified _RQRSRRRRRRS_ 0 0 0 ENSG00000175646|ENST00000312511|PRM1 ENSG00000175646|ENST00000312511|PRM1 ENSG00000175646|ENST00000312511|PRM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7001342773438 3 523.987972 1568.94209 NaN NaN NaN NaN NaN NaN NaN 173.05 1 168.16 167.66 168.66 -4.881 0 0 0 0.23698 1 34382 34382 1.1098 0 1 38911 6426 26083 26099 38242 38242 0.18037388216862382 RQRSRRRRRRS 11 Unmodified _RQRSRRRRRRS_ 0 0 0 ENSG00000175646|ENST00000312511|PRM1 ENSG00000175646|ENST00000312511|PRM1 ENSG00000175646|ENST00000312511|PRM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4072265625 2 785.47832 1568.94209 NaN NaN NaN NaN NaN NaN NaN 174.57 1 169.68 169.18 170.18 -4.8916 0 0 0 0.23698 1 34758 34758 1.1933 0 1 38912 6426 26083 26099 38243 38243 0.18037388216862382 RQSRRPRRRRR 11 Unmodified _RQSRRPRRRRR_ 0 0 0 ENST00000514738.5_1_5:31193871-31267519:+|nuORF ENST00000514738.5_1_5:31193871-31267519:+|nuORF ENST00000514738.5_1_5:31193871-31267519:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 527.3284301757812 3 527.328217 1578.96282 NaN NaN NaN NaN NaN NaN NaN 173.87 1 168.98 168.48 169.48 -4.8916 0 0 0 0.22632 1 34587 34587 0.026206 0 1 38913 10776 26084 26100 38244 38244 0.19649978596521578 RQTFVIHKL 9 Unmodified _RQTFVIHKL_ 0 0 0 nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2 nc|ENSG00000163535|Q562F6-2|SGO2 nc|ENSG00000163535|Q562F6-2|SGO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2052307128906 3 381.232864 1140.67676 0.12285 4.6835E-05 -0.57062 -0.00021754 -0.44777 -0.0001707 381.23255152535137 62.049 0.38791 58.68 58.497 58.884 -3.3694 16 10 2 0 0 0 0.59368 1 11559 11559 13.519 9.402 1 604150 38914 5438 26085 26101 38245 38245 0.11205106250849894 RQTFVRMK 8 Unmodified _RQTFVRMK_ 0 0 0 REV__ENSG00000163825|ENST00000296142|RTP3 REV__ENSG00000163825|ENST00000296142|RTP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27099609375 2 533.302936 1064.59132 NaN NaN NaN NaN NaN NaN NaN 134.45 1 129.58 129.08 130.08 -4.8726 0 0 0 0.23811 1 25828 25828 0.12286 0 1 + 38915 17621 26086 26102 38246 38246 0.06160617793534584 RQTFVRMK 8 Unmodified _RQTFVRMK_ 0 0 0 REV__ENSG00000163825|ENST00000296142|RTP3 REV__ENSG00000163825|ENST00000296142|RTP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2784423828125 2 533.302936 1064.59132 NaN NaN NaN NaN NaN NaN NaN 142.99 1 137.97 137.47 138.47 -5.0261 0 0 0 0.23538 1 27568 27568 0.063987 0 1 + 38916 17621 26086 26102 38247 38247 0.06160617793534584 RQTLEQLLQP 10 Unmodified _RQTLEQLLQP_ 0 0 0 ENST00000471757.5_1_2:96691131-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-5|GPAT2;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2 ENST00000471757.5_1_2:96691131-96693504:-|nuORF ENST00000471757.5_1_2:96691131-96693504:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 612.9002075195312 2 613.348594 1224.68264 1.1922 0.00073123 -1.0171 -0.00062386 0.17504 0.00010736 613.8488586482327 170.4 0.13362 165.61 165.52 165.66 -4.7898 5 3 2 0 0 0 0.86078 1 34568 34568 17.113 1.8644 1 5680000 38917 7050 26087 26103 38248 38248 0.07928159971856985 RQTRPLTS 8 Unmodified _RQTRPLTS_ 0 0 0 REV__ENST00000467698.5_1_2:232123695-232137721:+|nuORF REV__ENST00000467698.5_1_2:232123695-232137721:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.1859436035156 3 320.185802 957.535577 NaN NaN NaN NaN NaN NaN NaN 176.38 1 171.5 171 172 -4.8739 0 0 0 0.21486 1 35085 35085 1.6526 0 1 + 38918 21986 26088 26104 38249 38249 0.055111078775553324 RQVPRQRMNKE 11 Unmodified _RQVPRQRMNKE_ 0 0 0 ENST00000609285.5_1_20:1306388-1353809:+|nuORF ENST00000609285.5_1_20:1306388-1353809:+|nuORF ENST00000609285.5_1_20:1306388-1353809:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2420654296875 3 481.265009 1440.7732 NaN NaN NaN NaN NaN NaN NaN 131.45 1 126.67 126.17 127.17 -4.7725 0 0 0 0.22632 1 25302 25302 0.50596 0 1 38919 11768 26089 26105 38250 38250 0.07044305748490842 RQVTGVTRV 9 Unmodified _RQVTGVTRV_ 0 0 0 ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.52618408203125 3 339.205085 1014.59343 0.092119 3.1247E-05 -0.4936 -0.00016743 -0.40148 -0.00013618 339.2049012271314 25.577 0.41068 23.942 23.718 24.128 -1.6347 28 11 3 0 0 0 0.074448 1 4186 4186 59.368 30.287 1 4136800 38920 7279 26090 26106 38251 38251 0.08671369803005291 RQVTGVTRV 9 Unmodified _RQVTGVTRV_ 0 0 0 ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 339.205085 1014.59343 -0.34769 -0.00011794 0.068177 2.3126E-05 -0.27951 -9.4811E-05 339.2051475022694 24.052 0.43997 24.052 23.827 24.267 0 0.088076 7.126E-05 NaN 59.368 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2515500 38921 7279 26090 26106 0.08671369803005291 RQVTGVTRV 9 Unmodified _RQVTGVTRV_ 0 0 0 ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 339.205085 1014.59343 -0.75498 -0.00025609 0.41124 0.00013949 -0.34374 -0.0001166 339.2052037932163 25.821 0.41541 23.899 23.671 24.086 -1.9222 -0.065829 0.00042036 NaN 59.368 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3092100 38922 7279 26090 26106 0.08671369803005291 RQVTLYEA 8 Unmodified _RQVTLYEA_ 0 0 0 nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8 nc|ENSG00000101773|Q99708-3|RBBP8 nc|ENSG00000101773|Q99708-3|RBBP8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2648620605469 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 63.829 1 60.413 59.913 60.913 -3.4158 0 0 0 0.22636 1 11933 11933 1.7423 1.0609 1 38923 2083 26091 26107 38252 38252 0.023328834091330464 RQVTLYEA 8 Unmodified _RQVTLYEA_ 0 0 0 nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8 nc|ENSG00000101773|Q99708-3|RBBP8 nc|ENSG00000101773|Q99708-3|RBBP8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2659912109375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 64.036 1 60.779 60.279 61.279 -3.2567 0 0 0 0.2074 1 12017 12017 19.439 0 1 38924 2083 26091 26107 38253 38253 0.023328834091330464 RQYEKYREREL 11 Unmodified _RQYEKYREREL_ 0 0 0 ENSG00000241878|ENST00000439502|PISD;ENST00000460723.5_1_22:32017538-32058194:-|nuORF ENSG00000241878|ENST00000439502|PISD ENSG00000241878|ENST00000439502|PISD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.411376953125 2 785.410246 1568.80594 NaN NaN NaN NaN NaN NaN NaN 87.876 1 87.876 87.376 88.376 0 0 0 0 0.23698 1 17147 17147 1.1933 0.12188 1 38925 7860 26092 26108 38254 38254 0.04428791352279404 RQYEKYREREL 11 Unmodified _RQYEKYREREL_ 0 0 0 ENSG00000241878|ENST00000439502|PISD;ENST00000460723.5_1_22:32017538-32058194:-|nuORF ENSG00000241878|ENST00000439502|PISD ENSG00000241878|ENST00000439502|PISD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4100952148438 2 785.410246 1568.80594 NaN NaN NaN NaN NaN NaN NaN 12.318 1 11.309 10.809 11.809 -1.0098 0 0 0 0.23698 1 1700 1700 0 0 1 38926 7860 26092 26108 38255 38255 0.04428791352279404 RQYEKYREREL 11 Unmodified _RQYEKYREREL_ 0 0 0 ENSG00000241878|ENST00000439502|PISD;ENST00000460723.5_1_22:32017538-32058194:-|nuORF ENSG00000241878|ENST00000439502|PISD ENSG00000241878|ENST00000439502|PISD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3926391601562 2 785.410246 1568.80594 NaN NaN NaN NaN NaN NaN NaN 109.79 1 105.61 105.11 106.11 -4.1826 0 0 0 0.22632 1 21128 21128 0 0 1 38927 7860 26092 26108 38256 38256 0.04428791352279404 RQYEWFFMKMR 11 Unmodified _RQYEWFFMKMR_ 0 0 0 ENSG00000175874|ENST00000324768|CREG2 ENSG00000175874|ENST00000324768|CREG2 ENSG00000175874|ENST00000324768|CREG2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2643432617188 3 541.263729 1620.76936 NaN NaN NaN NaN NaN NaN NaN 175.41 1 170.52 170.02 171.02 -4.8845 0 0 0 0.22632 1 34882 34882 0 0 1 38928 6438 26093 26109 38257 38257 -0.0161950006963707 RQYEWFFMKMR 11 Unmodified _RQYEWFFMKMR_ 0 0 0 ENSG00000175874|ENST00000324768|CREG2 ENSG00000175874|ENST00000324768|CREG2 ENSG00000175874|ENST00000324768|CREG2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2762451171875 3 541.263729 1620.76936 NaN NaN NaN NaN NaN NaN NaN 175.96 1 171.09 170.59 171.59 -4.8739 0 0 0 0.22632 1 34994 34994 0 0 1 38929 6438 26093 26109 38258 38258 -0.0161950006963707 RQYEWFFMKMR 11 Unmodified _RQYEWFFMKMR_ 0 0 0 ENSG00000175874|ENST00000324768|CREG2 ENSG00000175874|ENST00000324768|CREG2 ENSG00000175874|ENST00000324768|CREG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2640991210938 3 541.263729 1620.76936 NaN NaN NaN NaN NaN NaN NaN 175.79 1 170.89 170.39 171.39 -4.9008 0 0 0 0.22632 1 35040 35040 0 0 1 38930 6438 26093 26109 38259 38259 -0.0161950006963707 RQYQSILEKQT 11 Unmodified _RQYQSILEKQT_ 0 0 0 ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1;PMFBP1|p.K427Rfs*17|1|0.45|ENSG00000118557|chr16:72132915-72132915|T/-|frameshift_variant;nc|ENSG00000118557|Q8TBY8-3|PMFBP1 ENSG00000118557|ENST00000237353|PMFBP1 ENSG00000118557|ENST00000237353|PMFBP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2516174316406 3 465.252652 1392.73613 NaN NaN NaN NaN NaN NaN NaN 150.75 1 145.63 145.13 146.13 -5.1204 0 0 0 0.22632 1 29219 29219 3.0723 3.0663 1 38931 3044 26094 26110 38260 38260 0.05546912683712435 RRAGAVHTL 9 Unmodified _RRAGAVHTL_ 0 0 0 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant;ENSG00000112787|ENST00000680143|FBRSL1 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.255126953125 2 490.79105 979.567546 -0.13151 -6.4542E-05 0.17887 8.7785E-05 0.04736 2.3244E-05 490.79116674657183 17.358 0.42015 16.047 15.886 16.307 -1.3109 32 11 4 0 0 0 0.66788 1 2793 2793 22.736 6.8891 1 13902000 38932 2712 26095 26111 38261 38261 0.07694520351378742 RRAGAVHTL 9 Unmodified _RRAGAVHTL_ 0 0 0 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant;ENSG00000112787|ENST00000680143|FBRSL1 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2735290527344 2 490.79105 979.567546 -0.36864 -0.00018092 0.48374 0.00023742 0.1151 5.6491E-05 490.79127570850653 17.364 0.41299 16.091 15.938 16.351 -1.2722 29 11 4 0 0 0 0.23744 1 2564 2564 43.858 15.371 1 10047000 38933 2712 26095 26111 38262 38262 0.07694520351378742 RRAGAVHTL 9 Unmodified _RRAGAVHTL_ 0 0 0 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant;ENSG00000112787|ENST00000680143|FBRSL1 FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 490.79105 979.567546 0.1024 5.0259E-05 0.019739 9.6877E-06 0.12214 5.9947E-05 490.79107285557234 16.168 0.41597 16.168 15.989 16.405 0 0.066122 -0.00015424 NaN 29.082 31 11 4 NaN NaN NaN NaN 0 NaN NaN 0 14447000 38934 2712 26095 26111 0.07694520351378742 RRAGRHLP 8 Unmodified _RRAGRHLP_ 0 0 0 ENST00000545417.5_1_1:44173220-44201909:+|nuORF ENST00000545417.5_1_1:44173220-44201909:+|nuORF ENST00000545417.5_1_1:44173220-44201909:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7764892578125 2 481.791384 961.568215 NaN NaN NaN NaN NaN NaN NaN 9.3201 1 8.2854 7.7854 8.7854 -1.0347 0 0 0 0.2396 1 943 943 0 0 1 38935 11120 26096 26112 38263 38263 0.08589359791062634 RRAGRHLP 8 Unmodified _RRAGRHLP_ 0 0 0 ENST00000545417.5_1_1:44173220-44201909:+|nuORF ENST00000545417.5_1_1:44173220-44201909:+|nuORF ENST00000545417.5_1_1:44173220-44201909:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7764892578125 2 481.791384 961.568215 NaN NaN NaN NaN NaN NaN NaN 9.336 1 8.3013 7.8013 8.8013 -1.0347 0 0 0 0.21486 1 945 945 0 0 1 38936 11120 26096 26112 38264 38264 0.08589359791062634 RRAGYINEF 9 Unmodified _RRAGYINEF_ 0 0 0 POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant;POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant;POLR3B|p.M1020Nfs*18|1|0.13|ENSG00000013503|chr12:106501392-106501393|-/A|frameshift_variant;ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2206726074219 3 375.86484 1124.57269 -0.22979 -8.6368E-05 0.64875 0.00024384 0.41897 0.00015747 375.8650591170171 65.654 0.70529 62.607 62.243 62.949 -3.047 55 20 4 0 0 0 0.44932 1 12744 12744 22.736 0 1 8680100 38937 1100 26097 26113 38265 38265 0.01538779423322012 RRAGYINEF 9 Unmodified _RRAGYINEF_ 0 0 0 POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant;POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant;POLR3B|p.M1020Nfs*18|1|0.13|ENSG00000013503|chr12:106501392-106501393|-/A|frameshift_variant;ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.86484 1124.57269 -0.47328 -0.00017789 0.40333 0.0001516 -0.069947 -2.629E-05 375.8650175554688 62.763 0.63928 62.763 62.414 63.053 0 0.14937 -2.9844E-05 NaN 22.736 54 17 4 NaN NaN NaN NaN 0 NaN NaN 0 7766700 38938 1100 26097 26113 0.01538779423322012 RRAGYINEF 9 Unmodified _RRAGYINEF_ 0 0 0 POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant;POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant;POLR3B|p.M1020Nfs*18|1|0.13|ENSG00000013503|chr12:106501392-106501393|-/A|frameshift_variant;ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.86484 1124.57269 -0.22979 -8.6368E-05 0.64875 0.00024384 0.41897 0.00015747 375.8650591170171 65.654 0.70529 62.607 62.243 62.949 -3.047 -0.0065359 0.00024689 NaN 22.736 55 20 4 NaN NaN NaN NaN 0 NaN NaN 0 8680100 38939 1100 26097 26113 0.01538779423322012 RRAGYINEF 9 Unmodified _RRAGYINEF_ 0 0 0 POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant;POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant;POLR3B|p.M1020Nfs*18|1|0.13|ENSG00000013503|chr12:106501392-106501393|-/A|frameshift_variant;ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.86484 1124.57269 0.25436 9.5603E-05 -0.052567 -1.9758E-05 0.20179 7.5845E-05 375.8648102168088 66.036 0.62892 62.578 62.278 62.907 -3.4581 -0.035066 -0.00054392 NaN 22.736 50 17 4 NaN NaN NaN NaN 0 NaN NaN 0 7034600 38940 1100 26097 26113 0.01538779423322012 RRAGYINEF 9 Unmodified _RRAGYINEF_ 0 0 0 POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant;POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant;POLR3B|p.M1020Nfs*18|1|0.13|ENSG00000013503|chr12:106501392-106501393|-/A|frameshift_variant;ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 375.86484 1124.57269 -0.37721 -0.00014178 0.72733 0.00027338 0.35012 0.0001316 375.8650846506296 65.789 0.69393 62.506 62.164 62.858 -3.2832 -0.10777 0.00033549 NaN 22.736 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6088100 38941 1100 26097 26113 0.01538779423322012 RRAPPLFPPQ 10 Unmodified _RRAPPLFPPQ_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2532958984375 2 589.843282 1177.67201 0.34738 0.0002049 1.3454 0.00079359 1.6928 0.00099849 589.8437360940173 140.45 0.13762 140.45 140.37 140.51 0 5 3 2 0 0 0 0.87854 1 27960 27960 1.1933 0 1 3327500 + 38942 14574 26098 26114 38266 38266 0.09028222108099726 RRATMIHHYRL 11 Unmodified _RRATMIHHYRL_ 0 0 0 REV__MC5R|p.F297Lfs*11|1|0.07|ENSG00000176136|chr18:13826652-13826653|-/T|frameshift_variant REV__MC5R|p.F297Lfs*11|1|0.07|ENSG00000176136|chr18:13826652-13826653|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 485.272216796875 3 485.270095 1452.78845 NaN NaN NaN NaN NaN NaN NaN 64.87 1 61.412 60.912 61.912 -3.4581 0 0 0 0.22632 1 12132 12132 0.03141 0 1 + 38943 18498 26099 26115 38267 38267 0.08017217336328031 RRCDEDREVKE 11 Unmodified _RRCDEDREVKE_ 0 0 0 REV__ENSG00000267909|ENST00000599174|CCDC177 REV__ENSG00000267909|ENST00000599174|CCDC177 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.89654541015625 3 478.896651 1433.66812 NaN NaN NaN NaN NaN NaN NaN 10.166 1 9.372 8.872 9.872 -0.79424 0 0 0 0.23698 1 1247 1247 0 0 1 + 38944 19907 26100 26116 38268 38268 -0.031362802386411204 RRCHYWRRCTK 11 Unmodified _RRCHYWRRCTK_ 0 0 0 ENST00000490065.5_1_1:243419475-243433494:+|nuORF;ENST00000366541.7_1_1:243419456-243433497:+|nuORF ENST00000490065.5_1_1:243419475-243433494:+|nuORF ENST00000490065.5_1_1:243419475-243433494:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2647705078125 3 522.266467 1563.77757 NaN NaN NaN NaN NaN NaN NaN 54.169 1 54.169 53.669 54.669 0 0 0 0 0.22632 1 10328 10328 0.50596 0 1 38945 9044 26101 26117 38269 38269 0.01823491690379342 RRCKSWFLLFL 11 Unmodified _RRCKSWFLLFL_ 0 0 0 ENST00000420584.3_1_6:34848118-34850727:-|nuORF ENST00000420584.3_1_6:34848118-34850727:-|nuORF ENST00000420584.3_1_6:34848118-34850727:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2645263671875 3 490.279708 1467.8173 NaN NaN NaN NaN NaN NaN NaN 142.36 1 142.36 141.86 142.86 0 0 0 0 0.22632 1 28383 28383 1.4551 0 1 38946 9660 26102 26118 38270 38270 0.10209941912762588 RRCLEIRRRLR 11 Unmodified _RRCLEIRRRLR_ 0 0 0 REV__MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant REV__MAML1|p.P424Rfs*17|1|0.25|ENSG00000161021|chr5:179766278-179766278|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 763.9666137695312 2 763.967877 1525.9212 NaN NaN NaN NaN NaN NaN NaN 177.76 1 172.89 172.39 173.39 -4.8686 0 0 0 0.22632 1 35379 35379 0.094841 0.094841 1 + 38947 17447 26103 26119 38271 38271 0.17927661792987237 RRCLPSCC 8 Unmodified _RRCLPSCC_ 0 0 0 nc|ENSG00000106100|Q9Y239-2|NOD1 nc|ENSG00000106100|Q9Y239-2|NOD1 nc|ENSG00000106100|Q9Y239-2|NOD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.114501953125 3 313.143675 936.409196 NaN NaN NaN NaN NaN NaN NaN 13.678 1 12.668 12.168 13.168 -1.0098 0 0 0 0.21486 1 2000 2000 0.40072 0 1 38948 12273 26104 26120 38272 38272 -0.06155181215228822 RRCNIETKSCV 11 Unmodified _RRCNIETKSCV_ 0 0 0 REV__nc|ENSG00000140538|Q16288-5|NTRK3 REV__nc|ENSG00000140538|Q16288-5|NTRK3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23431396484375 3 436.888551 1307.64382 NaN NaN NaN NaN NaN NaN NaN 17.715 1 16.404 15.904 16.904 -1.3109 0 0 0 0.23698 1 2850 2850 1.2148 0.4383 1 + 38949 16585 26105 26121 38273 38273 0.002307880741682311 RRCRCRRRRRR 11 Unmodified _RRCRCRRRRRR_ 0 0 0 ENST00000337565.9_1_2:111878510-111881339:+|nuORF;ENST00000583932.1_1_17:56065528-56065615:-|nuORF ENST00000337565.9_1_2:111878510-111881339:+|nuORF;ENST00000583932.1_1_17:56065528-56065615:-|nuORF ENST00000583932.1_1_17:56065528-56065615:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7810668945312 3 543.986921 1628.93893 NaN NaN NaN NaN NaN NaN NaN 154.68 1 154.68 154.18 155.18 0 0 0 0 0.22632 1 31002 31002 0.094841 0.094277 1 38950 8817;11518 26106 26122 38274 38274 0.14962098566820714 RRCTHAPP 8 Unmodified _RRCTHAPP_ 0 0 0 REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.1843566894531 3 313.164344 936.471203 NaN NaN NaN NaN NaN NaN NaN 91.96 1 88.035 87.535 88.535 -3.9251 0 0 0 0.21486 1 18006 18006 3.5965 1.098 1 + 38951 20572 26107 26123 38275 38275 0.00042629519759884715 RRCTHAPP 8 Unmodified _RRCTHAPP_ 0 0 0 REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.2001647949219 3 313.164344 936.471203 NaN NaN NaN NaN NaN NaN NaN 89.607 1 85.562 85.062 86.062 -4.0443 0 0 0 0.21486 1 17076 17076 3.9444 0 1 + 38952 20572 26107 26123 38276 38276 0.00042629519759884715 RRCTHAPP 8 Unmodified _RRCTHAPP_ 0 0 0 REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.16455078125 3 313.164344 936.471203 NaN NaN NaN NaN NaN NaN NaN 92.989 1 88.845 88.345 89.345 -4.1435 0 0 0 0.21486 1 17720 17720 3.9444 1.2092 1 + 38953 20572 26107 26123 38277 38277 0.00042629519759884715 RRCTHAPP 8 Unmodified _RRCTHAPP_ 0 0 0 REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.16192626953125 3 313.164344 936.471203 NaN NaN NaN NaN NaN NaN NaN 130.86 1 126.02 125.52 126.52 -4.8355 0 0 0 0.21486 1 25126 25126 1.6526 0 1 + 38954 20572 26107 26123 38278 38278 0.00042629519759884715 RRCTHAPP 8 Unmodified _RRCTHAPP_ 0 0 0 REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1549072265625 3 313.164344 936.471203 NaN NaN NaN NaN NaN NaN NaN 96.428 1 92.509 92.009 93.009 -3.9194 0 0 0 0.21486 1 18504 18504 3.9444 2.038 1 + 38955 20572 26107 26123 38279 38279 0.00042629519759884715 RRCTHAPP 8 Unmodified _RRCTHAPP_ 0 0 0 REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1285705566406 3 313.164344 936.471203 NaN NaN NaN NaN NaN NaN NaN 98.778 1 94.821 94.321 95.321 -3.9564 0 0 0 0.21486 1 18960 18960 3.9444 2.038 1 + 38956 20572 26107 26123 38280 38280 0.00042629519759884715 RRCTHAPP 8 Unmodified _RRCTHAPP_ 0 0 0 REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF REV__ENST00000324803.5_1_4:1388316-1389516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1646728515625 3 313.164344 936.471203 NaN NaN NaN NaN NaN NaN NaN 154.17 1 148.95 148.45 149.45 -5.2209 0 0 0 0.21486 1 29887 29887 1.6526 0 1 + 38957 20572 26107 26123 38281 38281 0.00042629519759884715 RRDAAATAP 9 Unmodified _RRDAAATAP_ 0 0 0 REV__ENSG00000004848|ENST00000379044|ARX REV__ENSG00000004848|ENST00000379044|ARX MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1697692871094 3 310.170152 927.488627 NaN NaN NaN NaN NaN NaN NaN 178.99 1 174.08 173.58 174.58 -4.9088 0 0 0 0.23508 1 35712 35712 0 0 1 + 38958 13842 26108 26124 38282 38282 0.02198248326396879 RRDDHDHHAR 10 Unmodified _RRDDHDHHAR_ 0 0 0 ENST00000469444.6_1_2:172949561-172951418:+|nuORF ENST00000469444.6_1_2:172949561-172951418:+|nuORF ENST00000469444.6_1_2:172949561-172951418:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 438.8768005371094 3 438.876802 1313.60858 NaN NaN NaN NaN NaN NaN NaN 6.0529 1 5.4266 4.9266 5.9266 -0.62626 0 0 0 0.22588 1 404 404 0 0 1 38959 10180 26109 26125 38283 38283 -0.03568370347124983 RRDLIDKQ 8 Unmodified _RRDLIDKQ_ 0 0 0 nc|ENSG00000142609|Q9C0B2-2|CFAP74;nc|ENSG00000142609|Q9C0B2|CFAP74;ENSG00000142609|ENST00000682832|CFAP74;nc|ENSG00000142609|Q9C0B2-3|CFAP74;ENST00000378592.1_1_1:1916823-1922395:-|nuORF nc|ENSG00000142609|Q9C0B2-2|CFAP74 nc|ENSG00000142609|Q9C0B2-2|CFAP74 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2655639648438 2 522.301447 1042.58834 NaN NaN NaN NaN NaN NaN NaN 87.468 1 83.718 83.218 84.218 -3.7501 0 0 0 0.23107 1 16737 16737 0.12286 0 1 38960 4430 26110 26126 38284 38284 0.06875065940357672 RRDLKKKKKKR 11 Unmodified _RRDLKKKKKKR_ 0 0 0 REV__ENSG00000114923|ENST00000358055|SLC4A3 REV__ENSG00000114923|ENST00000358055|SLC4A3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.37890625 2 742.504618 1482.99468 NaN NaN NaN NaN NaN NaN NaN 118.1 1 118.1 117.6 118.6 0 0 0 0 0.22632 1 23263 23263 0.094841 0.094841 1 + 38961 15393 26111 26127 38285 38285 0.2725053350707185 RRDLRRFRRRR 11 Unmodified _RRDLRRFRRRR_ 0 0 0 ENST00000505007.5_1_5:138941007-138941097:+|nuORF ENST00000505007.5_1_5:138941007-138941097:+|nuORF ENST00000505007.5_1_5:138941007-138941097:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7805786132812 3 548.340234 1641.99887 0.25062 0.00013742 4.402 0.0024138 4.6526 0.0025512 548.6773275927363 144.09 0.17088 139.42 139.33 139.5 -4.6694 6 4 2 0 0 0 0.89124 1 28536 28536 0.026206 0.026206 1 3549300 38962 10664 26112 26128 38286 38286 0.20355435773353747 RRDRLRRMREW 11 Unmodified _RRDRLRRMREW_ 0 0 0 ENSG00000106484|ENST00000223215|MEST ENSG00000106484|ENST00000223215|MEST ENSG00000106484|ENST00000223215|MEST MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7905883789062 3 543.970819 1628.89063 NaN NaN NaN NaN NaN NaN NaN 96.239 1 92.189 91.689 92.689 -4.0496 0 0 0 0.22632 1 18868 18868 0.00056442 0.00056442 1 38963 2388 26113 26129 38287 38287 0.10133883407957 RRDRRREGRRR 11 Unmodified _RRDRRREGRRR_ 0 0 0 REV__ENST00000556433.5_1_14:69445007-69445439:-|nuORF REV__ENST00000556433.5_1_14:69445007-69445439:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6776733398438 3 523.644094 1567.91045 NaN NaN NaN NaN NaN NaN NaN 107.18 1 103.05 102.55 103.55 -4.135 0 0 0 0.23698 1 20614 20614 2.2527 1.0379 1 + 38964 22995 26114 26130 38288 38288 0.14921395462897635 RRECLRVF 8 Unmodified _RRECLRVF_ 0 0 0 REV__nc|ENSG00000164616|Q9UKT6|FBXL21P REV__nc|ENSG00000164616|Q9UKT6|FBXL21P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 96.74 1 96.74 96.24 97.24 0 0 0 0 0.21486 1 18953 18953 1.8442 0 1 + 38965 24141 26115 26131 38289 38289 0.05087733650748305 RREDRFYKYFY 11 Unmodified _RREDRFYKYFY_ 0 0 0 REV__ENSG00000174885|ENST00000534750|NLRP6 REV__ENSG00000174885|ENST00000534750|NLRP6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7738037109375 3 548.27568 1641.80521 0.44301 0.00024289 -1.9201 -0.0010527 -1.4771 -0.00080985 548.2741821921778 151.91 0.17513 146.73 146.66 146.84 -5.1759 6 4 2 0 0 0 0.89092 1 29451 29451 0.026206 0 1 1178100 + 38966 18436 26116 26132 38290 38290 0.009979967032904824 RREDRFYKYFY 11 Unmodified _RREDRFYKYFY_ 0 0 0 REV__ENSG00000174885|ENST00000534750|NLRP6 REV__ENSG00000174885|ENST00000534750|NLRP6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.779541015625 3 548.27568 1641.80521 0.46812 0.00025666 3.0696 0.001683 3.5377 0.0019397 548.6109482326592 154.74 0.10924 149.49 149.4 149.51 -5.2526 4 2 2 0 0 0 0.89124 1 29990 29990 0.172 0.14579 1 1064000 + 38967 18436 26116 26132 38291 38291 0.009979967032904824 RREEEPQLLIW 11 Unmodified _RREEEPQLLIW_ 0 0 0 REV__ENST00000475867.5_1_10:5963439-5965826:+|nuORF REV__ENST00000475867.5_1_10:5963439-5965826:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2657470703125 3 490.268414 1467.78341 NaN NaN NaN NaN NaN NaN NaN 69.303 1 69.303 68.803 69.803 0 0 0 0 0.22632 1 13415 13415 1.4551 0 1 + 38968 16211 26117 26133 38292 38292 0.06823191954708818 RREERRQQRQR 11 Unmodified _RREERRQQRQR_ 0 0 0 REV__ENSG00000084092|ENST00000264230|NOA1 REV__ENSG00000084092|ENST00000264230|NOA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2637939453125 3 533.299993 1596.87815 0.17593 9.3824E-05 1.1493 0.00061292 1.3252 0.00070674 533.2996632528802 149.07 0.1828 144.36 144.26 144.44 -4.7095 5 4 2 0 0 0 0.96225 1 29615 29615 0.45452 0.35968 1 856010 + 38969 14463 26118 26134 38293 38293 0.10358563269232945 RREFEKLTQVY 11 Unmodified _RREFEKLTQVY_ 0 0 0 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2684631347656 3 490.268414 1467.78341 NaN NaN NaN NaN NaN NaN NaN 134.54 1 129.72 129.22 130.22 -4.8175 0 0 0 0.22632 1 25899 25899 3.0723 2.9003 1 38970 4694 26119 26135 38294 38294 0.06823191954686081 RREHNRLRRYI 11 Unmodified _RREHNRLRRYI_ 0 0 0 REV__nc|ENSG00000112175|P22003-2|BMP5 REV__nc|ENSG00000112175|P22003-2|BMP5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6788940429688 3 523.637946 1567.89201 NaN NaN NaN NaN NaN NaN NaN 94.486 1 90.496 89.996 90.996 -3.9907 0 0 0 0.23698 1 18515 18515 0.45452 0.37117 1 + 38971 15281 26120 26136 38295 38295 0.13077840768346505 RRELLRRKKV 10 Unmodified _RRELLRRKKV_ 0 0 0 REV__ISG20L2|p.C220Afs*19|2|0.26|ENSG00000143319|chr1:156726996-156726996|G/-|frameshift_variant REV__ISG20L2|p.C220Afs*19|2|0.26|ENSG00000143319|chr1:156726996-156726996|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 677.5819091796875 2 677.449311 1352.88407 0.42875 0.00029046 -3.8182 -0.0025866 -3.3895 -0.0022962 677.9465415470157 166.63 0.20418 161.65 161.5 161.7 -4.9811 8 5 2 0 0 0 1.1345 1 32685 32685 0.0013812 0.0013812 1 19490000 + 38972 16712 26121 26137 38296 38296 0.22174313518871713 RRELWFWWRGW 11 Unmodified _RRELWFWWRGW_ 0 0 0 ENST00000246635.7_1_17:39661629-39661743:-|nuORF ENST00000246635.7_1_17:39661629-39661743:-|nuORF ENST00000246635.7_1_17:39661629-39661743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.492431640625 2 839.431119 1676.84768 NaN NaN NaN NaN NaN NaN NaN 166.98 1 166.98 166.48 167.48 0 0 0 0 0.23698 1 34088 34088 0.30703 0.30703 1 38973 8210 26122 26138 38297 38297 0.03633436622158115 RRELWFWWRGW 11 Unmodified _RRELWFWWRGW_ 0 0 0 ENST00000246635.7_1_17:39661629-39661743:-|nuORF ENST00000246635.7_1_17:39661629-39661743:-|nuORF ENST00000246635.7_1_17:39661629-39661743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.470458984375 2 839.431119 1676.84768 NaN NaN NaN NaN NaN NaN NaN 170.89 1 166.1 165.6 166.6 -4.7898 0 0 0 0.22632 1 34710 34710 0 0 1 38974 8210 26122 26138 38298 38298 0.03633436622158115 RRELWFWWRGW 11 Unmodified _RRELWFWWRGW_ 0 0 0 ENST00000246635.7_1_17:39661629-39661743:-|nuORF ENST00000246635.7_1_17:39661629-39661743:-|nuORF ENST00000246635.7_1_17:39661629-39661743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.470458984375 2 839.431119 1676.84768 NaN NaN NaN NaN NaN NaN NaN 170.9 1 166.11 165.61 166.61 -4.7898 0 0 0 0.23698 1 34712 34712 0 0 1 38975 8210 26122 26138 38299 38299 0.03633436622158115 RRENPVQRWDL 11 Unmodified _RRENPVQRWDL_ 0 0 0 ENST00000305123.5_1_2:227663922-227664009:-|nuORF ENST00000305123.5_1_2:227663922-227664009:-|nuORF ENST00000305123.5_1_2:227663922-227664009:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2652587890625 3 490.263774 1467.76949 NaN NaN NaN NaN NaN NaN NaN 96.859 1 96.859 96.359 97.359 0 0 0 0 0.22632 1 18977 18977 0.58532 0.41332 1 38976 8598 26123 26139 38300 38300 0.0543195924626616 RREPRKGF 8 Unmodified _RREPRKGF_ 0 0 0 ENST00000299106.8_2_11:134019424-134019775:+|nuORF ENST00000299106.8_2_11:134019424-134019775:+|nuORF ENST00000299106.8_2_11:134019424-134019775:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6976928710938 2 523.304324 1044.5941 0.31161 0.00016307 -0.90905 -0.00047571 -0.59744 -0.00031264 523.3033626439016 139.95 0.41982 135.1 134.84 135.26 -4.8492 19 11 3 0 0 0 1.0147 1 27011 27011 5.2307 3.1709 1 1214500 38977 8532 26124 26140 38301 38301 0.0735820924271593 RREQERIHRER 11 Unmodified _RREQERIHRER_ 0 0 0 SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant;SAFB|p.D823Tfs*19|1|0.2|ENSG00000160633|chr19:5667361-5667361|G/-|frameshift_variant;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2688598632812 3 522.289094 1563.84545 NaN NaN NaN NaN NaN NaN NaN 149.11 1 144.04 143.54 144.54 -5.0733 0 0 0 0.22632 1 28890 28890 1.4551 0.94916 1 38978 5258 26125 26141 38302 38302 0.08608356146419283 RRERDFRRRRQ 11 Unmodified _RRERDFRRRRQ_ 0 0 0 ENST00000488868.1_1_1:28559432-28559522:-|nuORF ENST00000488868.1_1_1:28559432-28559522:-|nuORF ENST00000488868.1_1_1:28559432-28559522:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78515625 3 544.312233 1629.91487 0.26247 0.00014287 -0.91099 -0.00049586 -0.64852 -0.000353 544.3125303308152 141.05 0.17677 136.4 136.26 136.44 -4.6493 6 4 2 0 0 0 0.89136 1 27861 27861 0 0 1 1949900 38979 10490 26126 26142 38303 38303 0.12510859885787795 RRERDFRRRRQ 11 Unmodified _RRERDFRRRRQ_ 0 0 0 ENST00000488868.1_1_1:28559432-28559522:-|nuORF ENST00000488868.1_1_1:28559432-28559522:-|nuORF ENST00000488868.1_1_1:28559432-28559522:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3785400390625 2 815.964711 1629.91487 0.42749 0.00034881 2.5847 0.002109 3.0122 0.0024579 815.9667923360691 171.35 0.41563 166.43 166.27 166.69 -4.9149 13 11 2 0 0 0 0.96215 1 33978 33978 1.0715 0.80244 1 146500000 38980 10490 26126 26142 38304 38304 0.12510859885787795 RRERERRTRKW 11 Unmodified _RRERERRTRKW_ 0 0 0 nc|ENSG00000139218|Q99590-2|SCAF11;ENSG00000139218|ENST00000369367|SCAF11 nc|ENSG00000139218|Q99590-2|SCAF11 nc|ENSG00000139218|Q99590-2|SCAF11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7774658203125 3 543.648734 1627.92437 NaN NaN NaN NaN NaN NaN NaN 63.538 1 60.122 59.622 60.622 -3.4158 0 0 0 0.23698 1 11870 11870 0.094841 0.011491 1 38981 4231 26127 26143 38305 38305 0.13552628171328251 RRERRERRREM 11 Unmodified _RRERRERRREM_ 0 0 0 REV__ENSG00000160460|ENST00000598249|SPTBN4 REV__ENSG00000160460|ENST00000598249|SPTBN4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3497314453125 2 815.450579 1628.88661 NaN NaN NaN NaN NaN NaN NaN 178.09 1 178.09 177.59 178.59 0 0 0 0 0.23698 1 36900 36900 0.26902 0 1 + 38982 17421 26128 26144 38306 38306 0.09731793914193076 RRERRERRREM 11 Unmodified _RRERRERRREM_ 0 0 0 REV__ENSG00000160460|ENST00000598249|SPTBN4 REV__ENSG00000160460|ENST00000598249|SPTBN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7810668945312 3 543.969478 1628.88661 -0.4352 -0.00023673 -0.3645 -0.00019828 -0.7997 -0.00043501 543.9692727205075 12.233 0.17493 11.224 11.139 11.314 -1.0098 5 4 2 0 0 0 0.66313 1 1667 1667 0 0 1 1598300 + 38983 17421 26128 26144 38307 38307 0.09731793914193076 RRERRRHKQML 11 Unmodified _RRERRRHKQML_ 0 0 0 REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2797241210938 3 522.639181 1564.89571 -0.12074 -6.3102E-05 -2.1049 -0.0011001 -2.2257 -0.0011632 522.6398718352536 63.664 0.21155 63.664 63.537 63.749 0 6 5 2 0 0 0 0.96227 1 12238 12238 0.094841 0 1 1933100 + 38984 13953 26129 26145 38308 38308 0.13586187270539085 RRERRRQRLWG 11 Unmodified _RRERRRQRLWG_ 0 0 0 ENST00000556029.5_2_12:98909542-98909698:+|nuORF ENST00000556029.5_2_12:98909542-98909698:+|nuORF ENST00000556029.5_2_12:98909542-98909698:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6917724609375 3 523.641691 1567.90324 NaN NaN NaN NaN NaN NaN NaN 76.496 1 72.862 72.362 73.362 -3.6337 0 0 0 0.22632 1 14564 14564 0.094841 0 1 38985 11236 26130 26146 38309 38309 0.14200662862481295 RRERSTFRRQ 10 Unmodified _RRERSTFRRQ_ 0 0 0 nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF nc|ENSG00000100731|Q96RV3-3|PCNX1 nc|ENSG00000100731|Q96RV3-3|PCNX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2546691894531 3 464.595747 1390.76541 0.15505 7.2035E-05 3.7464 0.0017405 3.9014 0.0018126 465.26817469825085 60.462 0.98436 57.238 56.818 57.803 -3.2237 53 27 3 0 0 0 0.75917 1 11358 11358 2.8433 0.4085 1 2175900 38986 2010 26131 26147 38310 38310 0.08565914543214603 RREVQERRRRE 11 Unmodified _RREVQERRRRE_ 0 0 0 REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.39404296875 2 785.443277 1568.872 NaN NaN NaN NaN NaN NaN NaN 137.82 1 137.82 137.32 138.32 0 0 0 0 0.23519 1 27347 27347 4.1895 0.31317 1 + 38987 13974 26132 26148 38311 38311 0.11032045037745775 RREWIWFRWW 10 Unmodified _RREWIWFRWW_ 0 0 0 KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant;KRT6B|p.G65Rfs*80|1|0.06|ENSG00000185479|chr12:52451861-52451886|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.277099609375 3 540.94935 1619.82622 0.20019 0.00010829 3.9613 0.0021428 4.1615 0.0022511 540.9522265744625 147.93 0.10468 142.78 142.73 142.83 -5.1557 4 2 2 0 0 0 0.51405 2 28629 28629;28641 3.8763 1.97 1 1372700 38988 12014 26133 26149 38312;38313 38312 0.04110051593420394 RRFAASFRL 9 Unmodified _RRFAASFRL_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;PTPRK|p.Q311*|1|0.1|ENSG00000152894|chr6:128184660-128184663|GTTG/-|frameshift_variant;PTPRK-RSPO3|1|fusion;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;PTPRK|p.N914Tfs*7|1|0.12|ENSG00000152894|chr6:127996924-127996924|T/-|frameshift_variant;PTPRK|p.D908Ifs*13|1|0.39|ENSG00000152894|chr6:127996944-127996944|T/-|frameshift_variant;PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant;PTPRK-RSPO3|2|fusion;PTPRK|p.Y1034Tfs*61|1|0.4|ENSG00000152894|chr6:127985870-127985870|C/-|frameshift_variant;PTPRK|p.L1219*|2|0.16|ENSG00000152894|chr6:127981168-127981168|A/-|frameshift_variant;ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF ENST00000531050.5_1_6:128321419-128718758:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2043762207031 3 375.220958 1122.64105 -0.45151 -0.00016941 1.2022 0.0004511 0.75072 0.00028169 375.2205158287855 58.286 0.47827 58.286 58.068 58.547 0 17 13 2 0 0 0 0.68708 1 11171 11171 7.1017 0.37856 1 1323800 38989 4944;10881;10962 26134 26150 38314 38314 0.08463068793844286 RRFALYPKPL 10 Unmodified _RRFALYPKPL_ 0 0 0 ENST00000376511.6_1_6:30569009-30569351:-|nuORF;PPP1R10|p.L939Cfs*109|1|0.29|ENSG00000204569|chr6:30601557-30601557|G/-|frameshift_variant ENST00000376511.6_1_6:30569009-30569351:-|nuORF ENST00000376511.6_1_6:30569009-30569351:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.759521484375 2 630.882407 1259.75026 NaN NaN NaN NaN NaN NaN NaN 159.33 1 154.54 154.04 155.04 -4.7952 0 0 0 2.8426 1 31678 31678 0.0013812 0 1 38990 9250 26135 26151 38315 38315 0.13077654693302065 RRFDKTVTINE 11 Unmodified _RRFDKTVTINE_ 0 0 0 REV__ENSG00000146243|ENST00000369940|IRAK1BP1 REV__ENSG00000146243|ENST00000369940|IRAK1BP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24151611328125 3 460.252764 1377.73646 NaN NaN NaN NaN NaN NaN NaN 89.435 1 85.657 85.157 86.157 -3.7779 0 0 0 0.22632 1 17124 17124 1.4074 1.4061 1 + 38991 16880 26136 26152 38316 38316 0.06270332403596512 RRFEENRWTYL 11 Unmodified _RRFEENRWTYL_ 0 0 0 REV__ENSG00000181656|ENST00000315033|GPR88 REV__ENSG00000181656|ENST00000315033|GPR88 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3992309570312 2 785.399681 1568.78481 NaN NaN NaN NaN NaN NaN NaN 19.596 1 18.2 17.7 18.7 -1.3966 0 0 0 0.22632 1 3235 3235 0.094841 0 1 + 38992 18736 26137 26153 38317 38317 0.023168260434658805 RRFFNWFYWSI 11 Unmodified _RRFFNWFYWSI_ 0 0 0 ENSG00000139370|ENST00000266771|SLC15A4;ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000139370|ENST00000266771|SLC15A4 ENSG00000139370|ENST00000266771|SLC15A4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.275390625 3 541.273611 1620.799 NaN NaN NaN NaN NaN NaN NaN 19.03 1 17.634 17.134 18.134 -1.3966 0 0 0 0.22632 1 3121 3121 0.00056442 0.00056442 1 38993 2577 26138 26154 38318 38318 0.013435232624260607 RRFFPYYVY 9 Unmodified _RRFFPYYVY_ 0 0 0 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21588134765625 3 437.560869 1309.66078 0.1663 7.2765E-05 -0.16378 -7.1664E-05 0.0025169 1.1013E-06 437.56074619635365 133.48 1.1408 133.48 133 134.14 0 99 32 4 0 0 0 0.21532 1 26388 26388 36.506 29.029 1 31512000 38994 1034 26139 26155 38319 38319 0.018334000139475393 RRFFPYYVY 9 Unmodified _RRFFPYYVY_ 0 0 0 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2164306640625 3 437.560869 1309.66078 -0.10483 -4.587E-05 0.10275 4.496E-05 -0.0020799 -9.1008E-07 437.56085133723127 138.33 1.0454 133.69 133.26 134.3 -4.6413 96 29 4 0 0 0 0.88054 1 27240 27240 4.5289 3.1992 1 20941000 38995 1034 26139 26155 38320 38320 0.018334000139475393 RRFFPYYVY 9 Unmodified _RRFFPYYVY_ 0 0 0 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2151184082031 3 437.560869 1309.66078 0.031794 1.3912E-05 0.03152 1.3792E-05 0.063314 2.7704E-05 437.5608483376398 138.51 1.0908 133.56 133.05 134.14 -4.952 93 30 4 0 0 0 0.73481 1 26580 26580 24.991 20.275 1 19133000 38996 1034 26139 26155 38321 38321 0.018334000139475393 RRFFPYYVY 9 Unmodified _RRFFPYYVY_ 0 0 0 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2153015136719 3 437.560869 1309.66078 0.0743 3.2511E-05 -0.015711 -6.8744E-06 0.058589 2.5636E-05 437.5608215006828 138.34 0.88049 133.5 133.2 134.08 -4.84 81 24 4 0 0 0 0.12663 1 26707 26707 66.457 55.558 1 18042000 38997 1034 26139 26155 38322 38322 0.018334000139475393 RRFGLASL 8 Unmodified _RRFGLASL_ 0 0 0 REV__nc|ENSG00000168228|Q9H5U6-2|ZCCHC4 REV__nc|ENSG00000168228|Q9H5U6-2|ZCCHC4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2393493652344 2 460.277244 918.539935 NaN NaN NaN NaN NaN NaN NaN 179.29 1 174.42 173.92 174.92 -4.868 0 0 0 0.21486 1 35704 35704 5.2307 0 1 + 38998 18007 26140 26156 38323 38323 0.07740617091121749 RRFHHSRK 8 Unmodified _RRFHHSRK_ 0 0 0 ENST00000311127.8_1_3:124688549-124688819:-|nuORF ENST00000311127.8_1_3:124688549-124688819:-|nuORF ENST00000311127.8_1_3:124688549-124688819:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2164001464844 3 375.216319 1122.62713 NaN NaN NaN NaN NaN NaN NaN 116.76 1 112.18 111.68 112.68 -4.5815 0 0 0 0.23899 1 22406 22406 1.3295 1.3262 1 38999 8648 26141 26157 38324 38324 0.07071836085424366 RRFKWAIEL 9 Unmodified _RRFKWAIEL_ 0 0 0 nc|ENSG00000128463|Q5J8M3-3|EMC4;ENST00000557941.1_1_15:34517315-34518058:+|nuORF;nc|ENSG00000128463|Q5J8M3-2|EMC4;ENSG00000128463|ENST00000267750|EMC4 nc|ENSG00000128463|Q5J8M3-3|EMC4 nc|ENSG00000128463|Q5J8M3-3|EMC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 407.9231262207031 3 406.90838 1217.70331 -0.20357 -8.2834E-05 0.1535 6.2461E-05 -0.050067 -2.0373E-05 406.9083855438735 131.24 0.85748 126.6 126.24 127.1 -4.6359 68 23 4 0 0 0 0.10537 1 25853 25853 34.674 17.561 1 10582000 39000 3523 26142 26158 38325 38325 0.10316795142171031 RRFKWAIEL 9 Unmodified _RRFKWAIEL_ 0 0 0 nc|ENSG00000128463|Q5J8M3-3|EMC4;ENST00000557941.1_1_15:34517315-34518058:+|nuORF;nc|ENSG00000128463|Q5J8M3-2|EMC4;ENSG00000128463|ENST00000267750|EMC4 nc|ENSG00000128463|Q5J8M3-3|EMC4 nc|ENSG00000128463|Q5J8M3-3|EMC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 406.90838 1217.70331 0.015467 6.2938E-06 -0.063691 -2.5916E-05 -0.048224 -1.9623E-05 406.90830863502975 131.39 0.92477 126.56 126.13 127.06 -4.8355 -0.017735 -0.00021221 NaN 34.674 75 26 4 NaN NaN NaN NaN 0 NaN NaN 0 9473200 39001 3523 26142 26158 0.10316795142171031 RRFKWAIEL 9 Unmodified _RRFKWAIEL_ 0 0 0 nc|ENSG00000128463|Q5J8M3-3|EMC4;ENST00000557941.1_1_15:34517315-34518058:+|nuORF;nc|ENSG00000128463|Q5J8M3-2|EMC4;ENSG00000128463|ENST00000267750|EMC4 nc|ENSG00000128463|Q5J8M3-3|EMC4 nc|ENSG00000128463|Q5J8M3-3|EMC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 406.90838 1217.70331 -0.27819 -0.0001132 0.23089 9.3953E-05 -0.047295 -1.9245E-05 406.90842894946275 131.34 0.78638 126.56 126.25 127.04 -4.7725 -0.010091 0.0001474 NaN 34.674 59 21 3 NaN NaN NaN NaN 0 NaN NaN 0 7990100 39002 3523 26142 26158 0.10316795142171031 RRFLAARTL 9 Unmodified _RRFLAARTL_ 0 0 0 ENST00000586444.1_1_16:5147545-5147740:-|nuORF;ENST00000338711.9_1_12:8393265-8395508:-|nuORF;nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000585975.5_1_16:5140431-5147740:-|nuORF ENST00000586444.1_1_16:5147545-5147740:-|nuORF;nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 368.8994445800781 3 368.564725 1102.67235 -0.3492 -0.0001287 -0.062507 -2.3038E-05 -0.41171 -0.00015174 368.56470737931716 49.138 0.66634 46.257 45.889 46.556 -2.8811 41 18 3 0 0 0 0.15889 1 9269 9269 22.736 10.496 1 3036200 39003 3051;11551 26143 26159 38326 38326 0.1251164182795037 RRFLAARTL 9 Unmodified _RRFLAARTL_ 0 0 0 ENST00000586444.1_1_16:5147545-5147740:-|nuORF;ENST00000338711.9_1_12:8393265-8395508:-|nuORF;nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000585975.5_1_16:5140431-5147740:-|nuORF ENST00000586444.1_1_16:5147545-5147740:-|nuORF;nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 368.564725 1102.67235 0.13415 4.9443E-05 -0.51181 -0.00018863 -0.37766 -0.00013919 368.5645474386775 46.168 0.59023 46.168 45.898 46.488 0 -0.081641 -0.00011096 NaN 22.736 42 16 4 NaN NaN NaN NaN 0 NaN NaN 0 3113600 39004 3051;11551 26143 26159 0.1251164182795037 RRFLAARTL 9 Unmodified _RRFLAARTL_ 0 0 0 ENST00000586444.1_1_16:5147545-5147740:-|nuORF;ENST00000338711.9_1_12:8393265-8395508:-|nuORF;nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000585975.5_1_16:5140431-5147740:-|nuORF ENST00000586444.1_1_16:5147545-5147740:-|nuORF;nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 368.564725 1102.67235 0.028673 1.0568E-05 -0.57405 -0.00021157 -0.54538 -0.00020101 368.5645365106245 49.322 0.58512 46.323 46.033 46.618 -2.999 0.073791 -0.00017978 NaN 22.736 41 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3053400 39005 3051;11551 26143 26159 0.1251164182795037 RRFRLRAL 8 Unmodified _RRFRLRAL_ 0 0 0 REV__ENSG00000130748|ENST00000253047|TMEM160 REV__ENSG00000130748|ENST00000253047|TMEM160 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78515625 2 544.351609 1086.68866 0.33688 0.00018338 -2.0694 -0.0011265 -1.7326 -0.00094312 544.3515689118866 139.07 0.17574 134.22 134.14 134.32 -4.8492 6 4 2 0 0 0 0.87247 1 26815 26815 0.68139 0.3018 1 784160 + 39006 16030 26144 26160 38327 38327 0.14878767784693991 RRFSKLLKGR 10 Unmodified _RRFSKLLKGR_ 0 0 0 REV__ENST00000526148.5_2_11:10829311-10829500:-|nuORF REV__ENST00000526148.5_2_11:10829311-10829500:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7600708007812 2 630.904205 1259.79386 0.44541 0.00028101 -3.5126 -0.0022161 -3.0672 -0.0019351 630.9007504516574 134.02 0.17247 129.2 129.09 129.27 -4.8175 6 4 2 0 0 0 1.1344 1 25790 25790 0.69767 0 1 1559600 + 39007 22690 26145 26161 38328 38328 0.17435264190430644 RRFVWTFWRTR 11 Unmodified _RRFVWTFWRTR_ 0 0 0 ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF ENST00000479578.5_1_1:110198981-110200495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 805.8256225585938 2 805.944393 1609.87423 NaN NaN NaN NaN NaN NaN NaN 168.48 1 163.54 163.04 164.04 -4.9377 0 0 0 0.22632 1 33217 33217 1.4551 0 1 39008 10342 26146 26162 38329 38329 0.09369125513489962 RRFYRQFKFWL 11 Unmodified _RRFYRQFKFWL_ 0 0 0 REV__ENSG00000075035|ENST00000547525|WSCD2 REV__ENSG00000075035|ENST00000547525|WSCD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 549.7071533203125 3 549.640405 1645.89939 NaN NaN NaN NaN NaN NaN NaN 164 1 158.93 158.43 159.43 -5.0648 0 0 0 0.23698 1 31948 31948 0.094841 0.011491 1 + 39009 14323 26147 26163 38330 38330 0.10227180316041995 RRGAGGGA 8 Unmodified _RRGAGGGA_ 0 0 0 ENST00000562435.5_1_16:47165930-47177876:-|nuORF ENST00000562435.5_1_16:47165930-47177876:-|nuORF ENST00000562435.5_1_16:47165930-47177876:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.1798400878906 2 351.193711 700.372869 0.61582 0.00021627 0.87945 0.00030886 1.4953 0.00052513 351.19394451707365 120.91 0.66442 116.22 115.93 116.6 -4.6873 24 18 2 0 0 0 1.0282 1 23162 23162 0 0 1 819190 39010 11315 26148 26164 38331 38331 0.010697692662461122 RRGAIRVL 8 Unmodified _RRGAIRVL_ 0 0 0 nc|ENSG00000110074|Q96CU9-3|FOXRED1;ENSG00000110074|ENST00000263578|FOXRED1;ENST00000529802.1_1_11:126139101-126141609:+|nuORF;ENST00000534315.5_1_11:126141345-126145243:+|nuORF nc|ENSG00000110074|Q96CU9-3|FOXRED1 nc|ENSG00000110074|Q96CU9-3|FOXRED1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.8716125488281 3 314.210282 939.609017 -0.4599 -0.0001445 0.391 0.00012286 -0.068894 -2.1647E-05 314.2103617850269 30.862 0.48174 30.862 30.626 31.108 0 31 13 3 0 0 0 8448 1 5561 5561 70.716 10.326 1 5230100 39011 2559 26149 26165 38332 38332 0.13679701110697806 RRGAPPHF 8 Unmodified _RRGAPPHF_ 0 0 0 REV__ENST00000434693.6_1_3:29322482-29322533:+|nuORF REV__ENST00000434693.6_1_3:29322482-29322533:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.1756591796875 3 313.175349 936.504218 NaN NaN NaN NaN NaN NaN NaN 6.67 1 5.6254 5.1254 6.1254 -1.0446 0 0 0 0.21486 1 483 483 0.45834 0 1 + 39012 21653 26150 26166 38333 38333 0.033425796341362 RRGAPPHF 8 Unmodified _RRGAPPHF_ 0 0 0 REV__ENST00000434693.6_1_3:29322482-29322533:+|nuORF REV__ENST00000434693.6_1_3:29322482-29322533:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1688537597656 3 313.175349 936.504218 NaN NaN NaN NaN NaN NaN NaN 38.722 1 36.317 35.817 36.817 -2.4049 0 0 0 0.21486 1 6899 6899 1.6526 0 1 + 39013 21653 26150 26166 38334 38334 0.033425796341362 RRGDFIHVM 9 Unmodified _RRGDFIHVM_ 0 0 0 nc|ENSG00000177885|P62993-2|GRB2;ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF nc|ENSG00000177885|P62993-2|GRB2 nc|ENSG00000177885|P62993-2|GRB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.1917724609375 3 377.534437 1129.58148 -0.31381 -0.00011847 -0.11842 -4.4707E-05 -0.43222 -0.00016318 377.5345145318177 70.821 1.5353 70.821 70.344 71.88 0 132 43 5 0 0 0 0.058839 1 13797 13797 43.858 26.745 1 241310000 39014 6546 26151 26167 38335 38335 0.02187429788159534 RRGEYVLTF 9 Unmodified _RRGEYVLTF_ 0 0 0 ENSG00000111252|ENST00000341259|SH2B3;SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant;nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1;ENSG00000178188|ENST00000684370|SH2B1 ENSG00000111252|ENST00000341259|SH2B3;nc|ENSG00000178188|Q9NRF2-2|SH2B1 ENSG00000111252|ENST00000341259|SH2B3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2050476074219 3 380.876857 1139.60874 0.11081 4.2204E-05 -0.073765 -2.8095E-05 0.037043 1.4109E-05 380.8767647509172 106.03 0.90178 106.03 105.57 106.47 0 74 25 4 0 0 0 0.12517 4 20857 20848;20851;20857;20874 47.732 36.364 1 16330000 39015 2611;6564 26152 26168 38336;38337;38338;38339 38338 0.0445223660017291 RRGEYVLTF 9 Unmodified _RRGEYVLTF_ 0 0 0 ENSG00000111252|ENST00000341259|SH2B3;SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant;nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1;ENSG00000178188|ENST00000684370|SH2B1 ENSG00000111252|ENST00000341259|SH2B3;nc|ENSG00000178188|Q9NRF2-2|SH2B1 ENSG00000111252|ENST00000341259|SH2B3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20599365234375 3 380.876857 1139.60874 -0.61961 -0.00023599 0.56654 0.00021578 -0.053071 -2.0214E-05 380.87705027601504 109.98 0.75784 105.6 105.31 106.07 -4.3776 65 21 4 0 0 0 0.18865 1 21642 21642 38.615 18.2 1 31735000 39016 2611;6564 26152 26168 38340 38340 0.0445223660017291 RRGEYVLTF 9 Unmodified _RRGEYVLTF_ 0 0 0 ENSG00000111252|ENST00000341259|SH2B3;SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant;nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1;ENSG00000178188|ENST00000684370|SH2B1 ENSG00000111252|ENST00000341259|SH2B3;nc|ENSG00000178188|Q9NRF2-2|SH2B1 ENSG00000111252|ENST00000341259|SH2B3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.22222900390625 3 380.876857 1139.60874 -0.20631 -7.8579E-05 0.14874 5.665E-05 -0.057574 -2.1929E-05 380.87689139017823 110 0.77377 105.55 105.16 105.93 -4.4518 67 21 4 0 0 0 0.17396 1 21139 21139 40.725 18.067 1 26792000 39017 2611;6564 26152 26168 38341 38341 0.0445223660017291 RRGEYVLTF 9 Unmodified _RRGEYVLTF_ 0 0 0 ENSG00000111252|ENST00000341259|SH2B3;SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant;nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1;ENSG00000178188|ENST00000684370|SH2B1 ENSG00000111252|ENST00000341259|SH2B3;nc|ENSG00000178188|Q9NRF2-2|SH2B1 ENSG00000111252|ENST00000341259|SH2B3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2114562988281 3 380.876857 1139.60874 -0.028373 -1.0807E-05 0.001898 7.2289E-07 -0.026475 -1.0084E-05 380.8768328105779 109.77 0.88037 105.59 105.15 106.04 -4.1826 73 24 4 0 0 0 0.5428 1 21068 21068 4.897 2.3985 1 25927000 39018 2611;6564 26152 26168 38342 38342 0.0445223660017291 RRGFALLF 8 Unmodified _RRGFALLF_ 0 0 0 REV__DTX3|p.G110Vfs*86|1|0.17|ENSG00000178498|chr12:57607187-57607187|G/-|frameshift_variant REV__DTX3|p.G110Vfs*86|1|0.17|ENSG00000178498|chr12:57607187-57607187|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26593017578125 2 490.295436 978.57632 0.13838 6.7848E-05 -0.04323 -2.1195E-05 0.095153 4.6653E-05 490.29534443992975 129.31 1.0086 124.68 124.12 125.12 -4.6292 52 28 3 0 0 0 8448 1 25386 25386 0.62683 0 1 2672700 + 39019 13756 26153 26169 38343 38343 0.08617493987833313 RRGGGKHG 8 Unmodified _RRGGGKHG_ 0 0 0 ENST00000566205.1_1_15:82555156-82555264:+|nuORF ENST00000566205.1_1_15:82555156-82555264:+|nuORF ENST00000566205.1_1_15:82555156-82555264:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 412.7317810058594 2 412.733535 823.452517 NaN NaN NaN NaN NaN NaN NaN 87.624 1 83.629 83.129 84.129 -3.9953 0 0 0 0.2396 1 16690 16690 0 0 1 39020 11364 26154 26170 38344 38344 0.03372835940228924 RRGIFHIIL 9 Unmodified _RRGIFHIIL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.218505859375 3 375.573221 1123.69783 -0.16546 -6.2142E-05 0.47316 0.00017771 0.3077 0.00011557 375.5733261471976 121.62 0.63665 121.62 121.26 121.89 0 32 17 3 0 0 0 0.45972 2 23936 23936;23939 16.149 7.9936 1 1937500 39021 4411 26155 26171 38345;38346 38345 0.1409311635038648 RRGIFHIIL 9 Unmodified _RRGIFHIIL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.2330017089844 3 375.573221 1123.69783 -0.1107 -4.1577E-05 0.073581 2.7635E-05 -0.037122 -1.3942E-05 375.5731773635365 125.67 0.92348 121.07 120.68 121.61 -4.5984 60 25 3 0 0 0 0.15889 3 24847 24756;24847;24862 27.129 18.113 1 2448500 39022 4411 26155 26171 38347;38348;38349 38348 0.1409311635038648 RRGIFHIIL 9 Unmodified _RRGIFHIIL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.2424621582031 3 375.573221 1123.69783 0.3001 0.00011271 -0.34301 -0.00012883 -0.042915 -1.6118E-05 375.5730663233638 125.92 0.96913 121.15 120.73 121.7 -4.7681 46 27 2 0 0 0 0.058839 1 24211 24211 44.945 27.832 1 1980000 39023 4411 26155 26171 38350 38350 0.1409311635038648 RRGIFHIIL 9 Unmodified _RRGIFHIIL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2168273925781 3 375.573221 1123.69783 -0.4843 -0.00018189 0.53191 0.00019977 0.047607 1.788E-05 375.573370859759 126.04 0.88295 121.39 120.85 121.73 -4.6495 48 24 3 0 0 0 0.45972 1 24267 24267 8.1555 5.657 1 1711300 39024 4411 26155 26171 38351 38351 0.1409311635038648 RRGLVWQMWI 10 Unmodified _RRGLVWQMWI_ 0 0 0 ENST00000565633.1_1_16:88729753-88737893:+|nuORF;ENST00000563261.5_1_16:88729708-88738384:+|nuORF ENST00000565633.1_1_16:88729753-88737893:+|nuORF ENST00000565633.1_1_16:88729753-88737893:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.3529968261719 3 448.91677 1343.72848 -0.21129 -9.4853E-05 3.2294 0.0014497 3.0181 0.0013549 448.9180760268073 25.368 0.17303 23.515 23.432 23.605 -1.8534 6 4 2 0 0 0 0.76775 1 4176 4176 0.15932 0 1 127940 39025 11330 26156 26172 38352 38352 0.07036526673095977 RRGPKILL 8 Unmodified _RRGPKILL_ 0 0 0 GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant;nc|ENSG00000130055|Q9HCC8-2|GDPD2;ENSG00000130055|ENST00000374382|GDPD2;nc|ENSG00000130055|Q9HCC8-3|GDPD2 GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.88787841796875 3 318.218666 951.634169 -0.39212 -0.00012478 0.4464 0.00014205 0.054278 1.7272E-05 318.2187750535521 37.951 0.77761 37.951 37.542 38.32 0 46 21 3 0 0 0 8448 1 6994 6994 42.095 0 1 7957800 39026 3584 26157 26173 38353 38353 0.1564175591328194 RRGPKILL 8 Unmodified _RRGPKILL_ 0 0 0 GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant;nc|ENSG00000130055|Q9HCC8-2|GDPD2;ENSG00000130055|ENST00000374382|GDPD2;nc|ENSG00000130055|Q9HCC8-3|GDPD2 GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 318.218666 951.634169 0.0023567 7.4996E-07 -0.15664 -4.9847E-05 -0.15429 -4.9097E-05 318.21856310882436 40.076 0.96072 37.536 37.002 37.963 -2.5398 -0.11436 -0.00043581 NaN 42.095 80 26 4 NaN NaN NaN NaN 0 NaN NaN 0 18168000 39027 3584 26157 26173 0.1564175591328194 RRGPKILL 8 Unmodified _RRGPKILL_ 0 0 0 GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant;nc|ENSG00000130055|Q9HCC8-2|GDPD2;ENSG00000130055|ENST00000374382|GDPD2;nc|ENSG00000130055|Q9HCC8-3|GDPD2 GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant GDPD2|p.M234Cfs*8|2|0.19|ENSG00000130055|chrX:70427004-70427004|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 318.218666 951.634169 -0.57372 -0.00018257 0.42695 0.00013586 -0.14677 -4.6706E-05 318.2187624694932 40.024 1.0917 37.534 36.983 38.075 -2.4896 -0.11637 0.00012133 NaN 42.095 72 30 4 NaN NaN NaN NaN 0 NaN NaN 0 15390000 39028 3584 26157 26173 0.1564175591328194 RRGRRDGA 8 Unmodified _RRGRRDGA_ 0 0 0 REV__ENST00000367311.4_1_1:201435078-201437729:-|nuORF REV__ENST00000367311.4_1_1:201435078-201437729:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1571960449219 3 315.181274 942.521993 NaN NaN NaN NaN NaN NaN NaN 123.54 1 118.97 118.47 119.47 -4.5757 0 0 0 0.21486 1 24352 24352 1.6526 0 1 + 39029 20917 26158 26174 38354 38354 0.04843294888985383 RRGWRTRWRRR 11 Unmodified _RRGWRTRWRRR_ 0 0 0 ENST00000431489.5_1_2:62933068-62933182:+|nuORF ENST00000431489.5_1_2:62933068-62933182:+|nuORF ENST00000431489.5_1_2:62933068-62933182:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7841186523438 3 547.989313 1640.94611 NaN NaN NaN NaN NaN NaN NaN 163.7 1 163.7 163.2 164.2 0 0 0 0 0.22632 1 33020 33020 0.094841 0 1 39030 9786 26159 26175 38355 38355 0.15127477710575477 RRGWRTRWRRR 11 Unmodified _RRGWRTRWRRR_ 0 0 0 ENST00000431489.5_1_2:62933068-62933182:+|nuORF ENST00000431489.5_1_2:62933068-62933182:+|nuORF ENST00000431489.5_1_2:62933068-62933182:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7841186523438 3 547.989313 1640.94611 NaN NaN NaN NaN NaN NaN NaN 163.72 1 163.72 163.22 164.22 0 0 0 0 0.23698 1 33024 33024 0 0 1 39031 9786 26159 26175 38356 38356 0.15127477710575477 RRGWRTRWRRR 11 Unmodified _RRGWRTRWRRR_ 0 0 0 ENST00000431489.5_1_2:62933068-62933182:+|nuORF ENST00000431489.5_1_2:62933068-62933182:+|nuORF ENST00000431489.5_1_2:62933068-62933182:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7836303710938 3 547.989313 1640.94611 0.36556 0.00020032 4.2135 0.002309 4.5791 0.0025093 548.3270747947732 160.22 0.14255 155.42 155.37 155.51 -4.7952 5 3 2 0 0 0 0.96225 1 31848 31848 0.40827 0.26837 1 944620 39032 9786 26159 26175 38357 38357 0.15127477710575477 RRGWRTRWRRR 11 Unmodified _RRGWRTRWRRR_ 0 0 0 ENST00000431489.5_1_2:62933068-62933182:+|nuORF ENST00000431489.5_1_2:62933068-62933182:+|nuORF ENST00000431489.5_1_2:62933068-62933182:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7904052734375 3 547.989313 1640.94611 NaN NaN NaN NaN NaN NaN NaN 159.35 1 154.08 153.58 154.58 -5.2748 0 0 0 0.23698 1 30927 30927 0 0 1 39033 9786 26159 26175 38358 38358 0.15127477710575477 RRHIKRWEYFI 11 Unmodified _RRHIKRWEYFI_ 0 0 0 CON__Q28107 CON__Q28107 CON__Q28107 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 802.4522705078125 2 802.452051 1602.88955 NaN NaN NaN NaN NaN NaN NaN 177.55 1 172.68 172.18 173.18 -4.8686 0 0 0 0.22632 1 35335 35335 0 0 1 + 39034 684 26160 26176 38359 38359 0.11221992310674977 RRHLLLLLLG 10 Unmodified _RRHLLLLLLG_ 0 0 0 REV__ENST00000263674.3_1_11:73020153-73020513:+|nuORF REV__ENST00000263674.3_1_11:73020153-73020513:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2858276367188 2 602.40605 1202.79755 NaN NaN NaN NaN NaN NaN NaN 115.68 1 115.68 115.18 116.18 0 0 0 0 2.8426 1 22770 22770 0.26539 0 1 + 39035 20218 26161 26177 38360 38360 0.20425933964315846 RRHMKRWEYFI 11 Unmodified _RRHMKRWEYFI_ 0 0 0 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant;F5|p.G1754Efs*13|1|0.41|ENSG00000198734|chr1:169529768-169529768|T/-|frameshift_variant;ENSG00000198734|ENST00000367797|F5 F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3912353515625 2 811.430261 1620.84597 NaN NaN NaN NaN NaN NaN NaN 165.21 1 160.23 159.73 160.73 -4.9811 0 0 0 0.23698 1 32274 32274 0.26902 0 1 39036 7482 26162 26178 38361 38361 0.0603805954190193 RRHQQERLWRR 11 Unmodified _RRHQQERLWRR_ 0 0 0 REV__ENSG00000120254|ENST00000367321|MTHFD1L REV__ENSG00000120254|ENST00000367321|MTHFD1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2744750976562 3 540.973329 1619.89816 0.27599 0.0001493 -0.35256 -0.00019072 -0.076569 -4.1422E-05 541.3062475927808 115.08 0.10555 110.53 110.48 110.58 -4.555 4 2 2 0 0 0 0.66298 1 22102 22102 0.094841 0 1 857430 + 39037 15615 26163 26179 38362 38362 0.11300358999847049 RRHQQERLWRR 11 Unmodified _RRHQQERLWRR_ 0 0 0 REV__ENSG00000120254|ENST00000367321|MTHFD1L REV__ENSG00000120254|ENST00000367321|MTHFD1L MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 540.973329 1619.89816 0.27599 0.0001493 -0.35256 -0.00019072 -0.076569 -4.1422E-05 541.3062475927808 115.08 0.10555 110.53 110.48 110.58 -4.555 0 0 NaN 0.094841 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 857430 + 39038 15615 26163 26179 0.11300358999847049 RRHRMLAY 8 Unmodified _RRHRMLAY_ 0 0 0 REV__ENSG00000166188|ENST00000299237|ZNF319 REV__ENSG00000166188|ENST00000299237|ZNF319 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 368.1794738769531 3 368.206543 1101.5978 -0.36746 -0.0001353 -0.87031 -0.00032046 -1.2378 -0.00045576 368.20622600826465 57.254 1.2272 54.359 53.922 55.149 -2.8944 61 34 4 0 0 0 0.85653 1 11103 11103 1.8442 0.6509 1 4834800 + 39039 17831 26164 26180 38363 38363 0.05106555744896468 RRHRSHRRRQW 11 Unmodified _RRHRSHRRRQW_ 0 0 0 ENST00000552421.5_1_14:75230214-75230343:+|nuORF ENST00000552421.5_1_14:75230214-75230343:+|nuORF ENST00000552421.5_1_14:75230214-75230343:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7749633789062 3 544.308934 1629.90497 0.40351 0.00021963 -2.5901 -0.0014098 -2.1866 -0.0011902 544.6406468932499 161.65 0.21156 156.86 156.74 156.95 -4.7898 8 5 3 0 0 0 0.96227 1 32148 32148 0.094841 0 1 949340 39040 11195 26165 26181 38364 38364 0.11521716671109061 RRHRWRLEEVQ 11 Unmodified _RRHRWRLEEVQ_ 0 0 0 REV__TMEM109|p.Q230H|1|0.27|ENSG00000110108|chr11:60922123-60922123|G/T|missense_variant REV__TMEM109|p.Q230H|1|0.27|ENSG00000110108|chr11:60922123-60922123|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.26953125 3 522.290435 1563.84948 NaN NaN NaN NaN NaN NaN NaN 53.817 1 50.721 50.221 51.221 -3.0954 0 0 0 0.22632 1 9946 9946 0.026206 0 1 + 39041 24811 26166 26182 38365 38365 0.09010445640114995 RRHRWRLEEVQ 11 Unmodified _RRHRWRLEEVQ_ 0 0 0 REV__TMEM109|p.Q230H|1|0.27|ENSG00000110108|chr11:60922123-60922123|G/T|missense_variant REV__TMEM109|p.Q230H|1|0.27|ENSG00000110108|chr11:60922123-60922123|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2620849609375 3 522.290435 1563.84948 NaN NaN NaN NaN NaN NaN NaN 92.711 1 88.902 88.402 89.402 -3.8088 0 0 0 0.22632 1 17768 17768 0.172 0.077159 1 + 39042 24811 26166 26182 38366 38366 0.09010445640114995 RRHSKTSQTRH 11 Unmodified _RRHSKTSQTRH_ 0 0 0 REV__ENSG00000206190|ENST00000555815|ATP10A REV__ENSG00000206190|ENST00000555815|ATP10A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24298095703125 3 465.255502 1392.74468 NaN NaN NaN NaN NaN NaN NaN 27.185 1 25.55 25.05 26.05 -1.6347 0 0 0 0.22632 1 4538 4538 3.0723 0.34026 1 + 39043 19617 26167 26183 38367 38367 0.06401324163539357 RRIELGFGYPW 11 Unmodified _RRIELGFGYPW_ 0 0 0 REV__ENST00000338785.7_1_21:38885336-38885855:+|nuORF REV__ENST00000338785.7_1_21:38885336-38885855:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24920654296875 3 465.250695 1392.73025 NaN NaN NaN NaN NaN NaN NaN 144.8 1 144.8 144.3 145.3 0 0 0 0 0.22632 1 28934 28934 0.03141 0 1 + 39044 20685 26168 26184 38368 38368 0.04959858962706676 RRIKKAGS 8 Unmodified _RRIKKAGS_ 0 0 0 ENSG00000140459|ENST00000268053|CYP11A1;nc|ENSG00000140459|P05108-2|CYP11A1 ENSG00000140459|ENST00000268053|CYP11A1 ENSG00000140459|ENST00000268053|CYP11A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.229248046875 2 458.295968 914.577383 NaN NaN NaN NaN NaN NaN NaN 67.147 1 63.82 63.32 64.32 -3.3268 0 0 0 0.23312 1 12657 12657 6.2058 5.5244 1 39045 4302 26169 26185 38369 38369 0.11667708356753792 RRIKYLRIWFF 11 Unmodified _RRIKYLRIWFF_ 0 0 0 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26708984375 3 533.320784 1596.94052 NaN NaN NaN NaN NaN NaN NaN 11.981 1 11.981 11.481 12.481 0 0 0 0 0.22632 1 1636 1636 0 0 1 + 39046 18006 26170 26186 38370 38370 0.16592941355520452 RRIKYLRIWFF 11 Unmodified _RRIKYLRIWFF_ 0 0 0 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2769165039062 3 533.320784 1596.94052 NaN NaN NaN NaN NaN NaN NaN 160.53 1 155.28 154.78 155.78 -5.2526 0 0 0 0.22632 1 31155 31155 0 0 1 + 39047 18006 26170 26186 38371 38371 0.16592941355520452 RRIPRIEN 8 Unmodified _RRIPRIEN_ 0 0 0 PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;PRUNE2|p.V2231A|1|0.22|ENSG00000106772|chr9:76705582-76705582|A/G|missense_variant PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.88092041015625 3 351.880713 1052.62031 NaN NaN NaN NaN NaN NaN NaN 7.247 1 6.2024 5.7024 6.7024 -1.0446 0 0 0 0.21486 1 600 600 1.4819 0 1 39048 2404 26171 26187 38372 38372 0.09610478414174395 RRIRFRKKFVY 11 Unmodified _RRIRFRKKFVY_ 0 0 0 REV__ENST00000493793.1_1_1:51887572-51887638:-|nuORF REV__ENST00000493793.1_1_1:51887572-51887638:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.376220703125 2 784.986061 1567.95757 NaN NaN NaN NaN NaN NaN NaN 112.73 1 112.73 112.23 113.23 0 0 0 0 0.23698 1 22168 22168 0.35063 0.35063 1 + 39049 22357 26172 26188 38373 38373 0.19630861961331902 RRIRFRKKFVY 11 Unmodified _RRIRFRKKFVY_ 0 0 0 REV__ENST00000493793.1_1_1:51887572-51887638:-|nuORF REV__ENST00000493793.1_1_1:51887572-51887638:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6948852539062 3 523.6598 1567.95757 -0.043547 -2.2804E-05 -1.1579 -0.00060637 -1.2015 -0.00062917 523.993414942721 118.98 0.17552 114.37 114.21 114.39 -4.6106 6 4 2 0 0 0 0.89074 1 22827 22827 0.172 0.077159 1 2772700 + 39050 22357 26172 26188 38374 38374 0.19630861961331902 RRIRLLLQLV 10 Unmodified _RRIRLLLQLV_ 0 0 0 REV__ENST00000367869.1_3_6:134274441-134290035:+|nuORF REV__ENST00000367869.1_3_6:134274441-134290035:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 427.2935485839844 3 427.294346 1278.86121 NaN NaN NaN NaN NaN NaN NaN 11.347 1 11.347 10.847 11.847 0 0 0 0 0.22588 1 1497 1497 0.13989 0 1 + 39051 20931 26173 26189 38375 38375 0.23293294401401 RRIRLLLQLV 10 Unmodified _RRIRLLLQLV_ 0 0 0 REV__ENST00000367869.1_3_6:134274441-134290035:+|nuORF REV__ENST00000367869.1_3_6:134274441-134290035:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.29248046875 3 427.294346 1278.86121 NaN NaN NaN NaN NaN NaN NaN 11.51 1 10.444 9.9439 10.944 -1.0664 0 0 0 0.22588 1 1310 1310 0.13989 0 1 + 39052 20931 26173 26189 38376 38376 0.23293294401401 RRIRRWLRRFQ 11 Unmodified _RRIRRWLRRFQ_ 0 0 0 POGZ|p.E1016Rfs*3|1|0.42|ENSG00000143442|chr1:151405989-151405989|C/-|frameshift_variant;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ POGZ|p.E1016Rfs*3|1|0.42|ENSG00000143442|chr1:151405989-151405989|C/-|frameshift_variant POGZ|p.E1016Rfs*3|1|0.42|ENSG00000143442|chr1:151405989-151405989|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.77734375 3 548.337831 1641.99166 0.0068773 3.7711E-06 4.0154 0.0022018 4.0223 0.0022056 548.3401500706507 64.634 0.10091 64.634 64.549 64.65 0 4 2 2 0 0 0 0.89134 1 12432 12432 0.094841 0.094841 1 716320 39053 4488 26174 26190 38377 38377 0.19634703172937407 RRIRWQFFVEQ 11 Unmodified _RRIRWQFFVEQ_ 0 0 0 ENST00000404875.6_1_9:134378440-134382761:+|nuORF;ENST00000415075.5_1_9:134378361-134382761:+|nuORF ENST00000404875.6_1_9:134378440-134382761:+|nuORF ENST00000404875.6_1_9:134378440-134382761:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2634887695312 3 522.288031 1563.84226 NaN NaN NaN NaN NaN NaN NaN 139.03 1 134.39 133.89 134.89 -4.6439 0 0 0 0.22632 1 27449 27449 0.00056442 0 1 39054 9528 26175 26191 38378 38378 0.08289713039653179 RRIRWQFFVEQ 11 Unmodified _RRIRWQFFVEQ_ 0 0 0 ENST00000404875.6_1_9:134378440-134382761:+|nuORF;ENST00000415075.5_1_9:134378361-134382761:+|nuORF ENST00000404875.6_1_9:134378440-134382761:+|nuORF ENST00000404875.6_1_9:134378440-134382761:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26220703125 3 522.288031 1563.84226 NaN NaN NaN NaN NaN NaN NaN 155.5 1 150.22 149.72 150.72 -5.2854 0 0 0 0.22632 1 30161 30161 0.094841 0.068635 1 39055 9528 26175 26191 38379 38379 0.08289713039653179 RRIRWQFFVEQ 11 Unmodified _RRIRWQFFVEQ_ 0 0 0 ENST00000404875.6_1_9:134378440-134382761:+|nuORF;ENST00000415075.5_1_9:134378361-134382761:+|nuORF ENST00000404875.6_1_9:134378440-134382761:+|nuORF ENST00000404875.6_1_9:134378440-134382761:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2706909179688 3 522.288031 1563.84226 NaN NaN NaN NaN NaN NaN NaN 156.28 1 151.01 150.51 151.51 -5.2712 0 0 0 0.22632 1 30306 30306 0.00056442 0 1 39056 9528 26175 26191 38380 38380 0.08289713039653179 RRKALWFECD 10 Unmodified _RRKALWFECD_ 0 0 0 REV__MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant REV__MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 441.8992919921875 3 441.892401 1322.65538 NaN NaN NaN NaN NaN NaN NaN 10.3 1 9.3957 8.8957 9.8957 -0.90401 0 0 0 0.22588 1 1277 1277 0.13989 0 1 + 39057 15119 26176 26192 38381 38381 0.006953531598128393 RRKEGRKEKS 10 Unmodified _RRKEGRKEKS_ 0 0 0 ENST00000316399.10_1_11:15990515-15990713:-|nuORF ENST00000316399.10_1_11:15990515-15990713:-|nuORF ENST00000316399.10_1_11:15990515-15990713:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25262451171875 3 425.253098 1272.73747 NaN NaN NaN NaN NaN NaN NaN 124.57 1 119.81 119.31 120.31 -4.7681 0 0 0 0.22588 1 23923 23923 7.4771 1.6089 1 39058 8681 26177 26193 38382 38382 0.112005915631471 RRKEMLYKRWV 11 Unmodified _RRKEMLYKRWV_ 0 0 0 ENSG00000219626|ENST00000615575|FAM228B;FAM228B|p.R105Gfs*6|1|0.31|ENSG00000219626|chr2:24138047-24138047|A/-|frameshift_variant;FAM228B|p.R105Kfs*15|1|0.14|ENSG00000219626|chr2:24138046-24138047|-/A|frameshift_variant;FAM228B|p.Y137Ifs*2|1|0.08|ENSG00000219626|chr2:24139415-24139415|T/-|frameshift_variant ENSG00000219626|ENST00000615575|FAM228B ENSG00000219626|ENST00000615575|FAM228B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2612915039062 3 522.301283 1563.88202 -0.62677 -0.00032736 0.074613 3.8971E-05 -0.55216 -0.00028839 522.6368706637346 140.27 0.17435 135.28 135.18 135.36 -4.9877 5 4 2 0 0 0 0.81822 1 26980 26980 1.2148 0.76031 1 2868300 39059 7759 26178 26194 38383 38383 0.12263516718758183 RRKEVVVYL 9 Unmodified _RRKEVVVYL_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-4|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 388.1961364746094 3 387.908269 1160.70298 0.23003 8.9229E-05 -0.38262 -0.00014842 -0.1526 -5.9193E-05 387.9080331301407 65.541 0.70316 62.083 61.716 62.419 -3.4581 32 19 3 0 0 0 0.27464 1 12262 12262 29.082 20.926 1 1580600 39060 2583;12720;12282 26179 26195 38384 38384 0.12905375422337784 RRKEVVVYL 9 Unmodified _RRKEVVVYL_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-4|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 387.908269 1160.70298 -0.19717 -7.6484E-05 -0.062789 -2.4356E-05 -0.25996 -0.00010084 387.90823171370744 65.099 0.54546 62.052 61.799 62.345 -3.047 -0.00048621 8.4341E-05 NaN 29.082 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1074000 39061 2583;12720;12282 26179 26195 0.12905375422337784 RRKEVVVYL 9 Unmodified _RRKEVVVYL_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-4|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 387.908269 1160.70298 -0.3345 -0.00012976 0.040123 1.5564E-05 -0.29438 -0.00011419 387.90821554788266 65.306 0.60674 62.023 61.726 62.333 -3.2832 -0.02992 0.0002041 NaN 29.082 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1170500 39062 2583;12720;12282 26179 26195 0.12905375422337784 RRKFRRQRPRL 11 Unmodified _RRKFRRQRPRL_ 0 0 0 ENSG00000171388|ENST00000429967|APLN ENSG00000171388|ENST00000429967|APLN ENSG00000171388|ENST00000429967|APLN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6919555664062 3 523.665948 1567.97601 0.18541 9.7096E-05 -4.1959 -0.0021972 -4.0105 -0.0021001 523.6648104991107 136.97 0.55072 136.97 136.58 137.13 0 21 15 3 0 0 0 0.82427 1 27093 27093 0.40827 0.041592 1 18589000 39063 6141 26180 26196 38385 38385 0.2147441665590577 RRKKDKKK 8 Unmodified _RRKKDKKK_ 0 0 0 REV__ZNF609|p.K734Rfs*12|2|0.43|ENSG00000180357|chr15:64675048-64675048|A/-|frameshift_variant REV__ZNF609|p.K734Rfs*12|2|0.43|ENSG00000180357|chr15:64675048-64675048|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7836303710938 2 543.864549 1085.71454 NaN NaN NaN NaN NaN NaN NaN 86.089 1 82.36 81.86 82.86 -3.7289 0 0 0 0.2396 1 16460 16460 0.063987 0 1 + 39064 25586 26181 26197 38386 38386 0.17511617236323218 RRKKERKEKRR 11 Unmodified _RRKKERKEKRR_ 0 0 0 ENSG00000137573|ENST00000402687|SULF1;ENST00000521946.5_1_8:70505207-70554528:+|nuORF ENSG00000137573|ENST00000402687|SULF1 ENSG00000137573|ENST00000402687|SULF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3960571289062 2 785.497856 1568.98116 NaN NaN NaN NaN NaN NaN NaN 146.07 1 141.07 140.57 141.57 -5 0 0 0 0.22632 1 28264 28264 0 0 1 39065 4094 26182 26198 38387 38387 0.21942675727837013 RRKKERKEKRR 11 Unmodified _RRKKERKEKRR_ 0 0 0 ENSG00000137573|ENST00000402687|SULF1;ENST00000521946.5_1_8:70505207-70554528:+|nuORF ENSG00000137573|ENST00000402687|SULF1 ENSG00000137573|ENST00000402687|SULF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3960571289062 2 785.497856 1568.98116 NaN NaN NaN NaN NaN NaN NaN 146.1 1 141.1 140.6 141.6 -5 0 0 0 0.23698 1 28268 28268 0 0 1 39066 4094 26182 26198 38388 38388 0.21942675727837013 RRKKGEEY 8 Unmodified _RRKKGEEY_ 0 0 0 REV__nc|ENSG00000157445|Q8IZS8-3|CACNA2D3 REV__nc|ENSG00000157445|Q8IZS8-3|CACNA2D3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2705688476562 2 533.293622 1064.57269 -0.037119 -1.9796E-05 0.24621 0.0001313 0.20909 0.0001115 533.2937356621877 17.942 0.27736 16.67 16.52 16.798 -1.2722 16 7 3 0 0 0 0.89926 1 2690 2690 1.3295 0 1 535420 + 39067 17297 26183 26199 38389 38389 0.04298779423334054 RRKKKKKK 8 Unmodified _RRKKKKKK_ 0 0 0 ENST00000341049.6_1_7:116199659-116199932:+|nuORF REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;ENST00000341049.6_1_7:116199659-116199932:+|nuORF;REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.496337890625 3 367.268131 1098.78256 NaN NaN NaN NaN NaN NaN NaN 45.027 1 42.237 41.737 42.737 -2.79 0 0 0 0.23899 1 8475 8475 1.3295 1.0225 1 39068 22093;21697;8856 26184 26200 38390 38390 0.23712486886961415 RRKKRLGH 8 Unmodified _RRKKRLGH_ 0 0 0 REV__nc|ENSG00000158321|Q8WXX7-3|AUTS2 REV__nc|ENSG00000158321|Q8WXX7-3|AUTS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 525.860595703125 2 525.841408 1049.66826 NaN NaN NaN NaN NaN NaN NaN 10.261 1 9.357 8.857 9.857 -0.90401 0 0 0 0.21486 1 1268 1268 0 0 1 + 39069 13162 26185 26201 38391 38391 0.14541597124912187 RRKKRRQREHL 11 Unmodified _RRKKRRQREHL_ 0 0 0 SCN3A|p.N1922Ifs*19|1|0.09|ENSG00000153253|chr2:165090388-165090388|T/-|frameshift_variant;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant;SCN3A|p.T1958Qfs*16|1|0.28|ENSG00000153253|chr2:165090281-165090281|T/-|frameshift_variant;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;SCN3A|p.K551Nfs*10|1|0.38|ENSG00000153253|chr2:165146757-165146757|T/-|frameshift_variant SCN3A|p.N1922Ifs*19|1|0.09|ENSG00000153253|chr2:165090388-165090388|T/-|frameshift_variant SCN3A|p.N1922Ifs*19|1|0.09|ENSG00000153253|chr2:165090388-165090388|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.2414245605469 5 313.397315 1561.95019 -0.48765 -0.00015283 0.3629 0.00011373 -0.12475 -3.9096E-05 313.39730722525104 125.59 1.6627 125.59 124.37 126.03 0 88 46 4 0 0 0 0.96228 1 24831 24831 0 0 1 3490100 39070 4965 26186 26202 38392 38392 0.19169522413631057 RRKLGMKLKM 10 Unmodified _RRKLGMKLKM_ 0 0 0 ENST00000301624.8_1_17:76104411-76104549:+|nuORF ENST00000301624.8_1_17:76104411-76104549:+|nuORF ENST00000301624.8_1_17:76104411-76104549:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7655639648438 2 630.891395 1259.76824 NaN NaN NaN NaN NaN NaN NaN 29.174 1 27.218 26.718 27.718 -1.9561 0 0 0 2.8426 1 5242 5242 0.0013812 0 1 39071 8562 26187 26203 38393 38393 0.14874330352154175 RRKLLGSV 8 Unmodified _RRKLLGSV_ 0 0 0 REV__ENST00000479945.1_1_3:58419189-58419518:-|nuORF REV__ENST00000479945.1_1_3:58419189-58419518:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1697998046875 3 310.206538 927.597784 NaN NaN NaN NaN NaN NaN NaN 4.4639 1 3.424 2.924 3.924 -1.04 0 0 0 0.2396 1 99 99 0.30703 0 1 + 39072 18013 26188 26204 38394 38394 0.13108879016579067 RRKQKKRRRRM 11 Unmodified _RRKQKKRRRRM_ 0 0 0 REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2840576171875 3 533.674337 1598.00118 0.11112 5.9303E-05 -0.73975 -0.00039478 -0.62862 -0.00033548 533.6748627296712 133.83 0.16934 133.83 133.7 133.87 0 6 4 2 0 0 0 0.96227 1 26453 26453 0.08335 0 1 1680300 + 39073 20575 26189 26205 38395 38395 0.22610148186822698 RRKQKKRRRRM 11 Unmodified _RRKQKKRRRRM_ 0 0 0 REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2720947265625 3 533.674337 1598.00118 0.84262 0.00044968 2.5034 0.001336 3.346 0.0017857 533.6753343180798 118.68 0.25941 114.07 113.85 114.11 -4.6106 8 6 2 0 0 0 0.89136 1 22760 22760 0.0072825 0 1 802610 + 39074 20575 26189 26205 38396 38396 0.22610148186822698 RRKRKTRRRKK 11 Unmodified _RRKRKTRRRKK_ 0 0 0 PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.690673828125 3 523.688864 1568.04476 NaN NaN NaN NaN NaN NaN NaN 169.51 1 164.72 164.22 165.22 -4.7898 0 0 0 0.22632 1 34341 34341 0.094841 0 1 39075 1425;12786 26190 26206 38397 38397 0.2834608095558906 RRKRLLFY 8 Unmodified _RRKRLLFY_ 0 0 0 ENST00000348165.9_1_7:156931958-156961760:+|nuORF ENST00000348165.9_1_7:156931958-156961760:+|nuORF ENST00000348165.9_1_7:156931958-156961760:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3242797851562 2 576.361642 1150.70873 0.48711 0.00028075 -3.5999 -0.0020748 -3.1127 -0.0017941 576.859688728709 116.63 0.17005 112.28 112.2 112.37 -4.3585 5 4 2 0 0 0 0.89951 1 22470 22470 0.12286 0 1 829180 39076 8916 26191 26207 38398 38398 0.1394051872464388 RRKRRKRRRFN 11 Unmodified _RRKRRKRRRFN_ 0 0 0 REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.361328125 2 815.017081 1628.01961 NaN NaN NaN NaN NaN NaN NaN 159.77 1 154.97 154.47 155.47 -4.7952 0 0 0 0.22632 1 31769 31769 0 0 1 + 39077 22278 26192 26208 38399 38399 0.23072026153045044 RRKRRKRRRFN 11 Unmodified _RRKRRKRRRFN_ 0 0 0 REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7844848632812 3 543.68048 1628.01961 NaN NaN NaN NaN NaN NaN NaN 99.987 1 95.997 95.497 96.497 -3.9895 0 0 0 0.22632 1 19204 19204 0 0 1 + 39078 22278 26192 26208 38400 38400 0.23072026153045044 RRKRRRRAWEQ 11 Unmodified _RRKRRRRAWEQ_ 0 0 0 REV__ENST00000379660.4_1_6:8435667-8435706:-|nuORF REV__ENST00000379660.4_1_6:8435667-8435706:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2776489257812 3 533.317207 1596.92979 NaN NaN NaN NaN NaN NaN NaN 159.28 1 154.49 153.99 154.99 -4.7952 0 0 0 0.22632 1 31668 31668 0.026206 0.026206 1 + 39079 21143 26193 26209 38401 38401 0.1552035175382116 RRKRRRRAWEQ 11 Unmodified _RRKRRRRAWEQ_ 0 0 0 REV__ENST00000379660.4_1_6:8435667-8435706:-|nuORF REV__ENST00000379660.4_1_6:8435667-8435706:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.268310546875 3 533.317207 1596.92979 NaN NaN NaN NaN NaN NaN NaN 163.95 1 159.16 158.66 159.66 -4.7898 0 0 0 0.22632 1 32722 32722 0.026206 0.026206 1 + 39080 21143 26193 26209 38402 38402 0.1552035175382116 RRKRRRRAWEQ 11 Unmodified _RRKRRRRAWEQ_ 0 0 0 REV__ENST00000379660.4_1_6:8435667-8435706:-|nuORF REV__ENST00000379660.4_1_6:8435667-8435706:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2740478515625 3 533.317207 1596.92979 0.21196 0.00011304 -1.3747 -0.00073315 -1.1627 -0.0006201 533.6509257458415 154.19 0.13976 149.42 149.33 149.47 -4.7684 5 3 2 0 0 0 0.89126 1 30634 30634 0.172 0 1 582040 + 39081 21143 26193 26209 38403 38403 0.1552035175382116 RRKRRRRKRTK 11 Unmodified _RRKRRRRKRTK_ 0 0 0 REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2615356445312 3 533.024246 1596.05091 NaN NaN NaN NaN NaN NaN NaN 160.95 1 160.95 160.45 161.45 0 0 0 0 0.23698 1 32319 32319 0 0 1 + 39082 20887 26194 26210 38404 38404 0.27672599187121705 RRKRRRRKRTK 11 Unmodified _RRKRRRRKRTK_ 0 0 0 REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2664794921875 3 533.024246 1596.05091 NaN NaN NaN NaN NaN NaN NaN 172.64 1 167.85 167.35 168.35 -4.7898 0 0 0 0.22632 1 35178 35178 0 0 1 + 39083 20887 26194 26210 38405 38405 0.27672599187121705 RRKRRRRKRTK 11 Unmodified _RRKRRRRKRTK_ 0 0 0 REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2664794921875 3 533.024246 1596.05091 NaN NaN NaN NaN NaN NaN NaN 172.65 1 167.86 167.36 168.36 -4.7898 0 0 0 0.23698 1 35182 35182 0.08335 0.08335 1 + 39084 20887 26194 26210 38406 38406 0.27672599187121705 RRKRRRRKRTK 11 Unmodified _RRKRRRRKRTK_ 0 0 0 REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2684936523438 3 533.024246 1596.05091 NaN NaN NaN NaN NaN NaN NaN 46.088 1 43.223 42.723 43.723 -2.8653 0 0 0 0.22632 1 8372 8372 0 0 1 + 39085 20887 26194 26210 38407 38407 0.27672599187121705 RRKVLPLARLV 11 Unmodified _RRKVLPLARLV_ 0 0 0 ENST00000506763.5_1_4:2243363-2243819:-|nuORF ENST00000506763.5_1_4:2243363-2243819:-|nuORF ENST00000506763.5_1_4:2243363-2243819:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 440.9020080566406 3 440.969863 1319.88776 NaN NaN NaN NaN NaN NaN NaN 13.629 1 12.418 11.918 12.918 -1.2106 0 0 0 0.22632 1 1741 1741 0.00056442 0 1 39086 10686 26195 26211 38408 38408 0.24060983292724814 RRKVRVKVY 9 Unmodified _RRKVRVKVY_ 0 0 0 ENSG00000163083|ENST00000295228|INHBB ENSG00000163083|ENST00000295228|INHBB ENSG00000163083|ENST00000295228|INHBB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.292236328125 2 602.393474 1202.77239 NaN NaN NaN NaN NaN NaN NaN 94.974 1 90.782 90.282 91.282 -4.1911 0 0 0 0.19624 1 18124 18124 0.073264 0 1 39087 5398 26196 26212 38409 38409 0.17911879161738398 RRKYHWHKL 9 Unmodified _RRKYHWHKL_ 0 0 0 ENST00000264110.6_1_2:175979496-175982728:-|nuORF ENST00000264110.6_1_2:175979496-175982728:-|nuORF ENST00000264110.6_1_2:175979496-175982728:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 441.87640380859375 3 441.923024 1322.74724 NaN NaN NaN NaN NaN NaN NaN 10.532 1 10.532 10.032 11.032 0 0 0 0 0.23508 1 1322 1322 0.23584 0.076522 1 39088 8333 26197 26213 38410 38410 0.09877824359136866 RRLADHEKV 9 Unmodified _RRLADHEKV_ 0 0 0 ENST00000567344.1_1_16:17232123-17232237:+|nuORF ENST00000567344.1_1_16:17232123-17232237:+|nuORF ENST00000567344.1_1_16:17232123-17232237:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21649169921875 3 375.215873 1122.62579 NaN NaN NaN NaN NaN NaN NaN 176.85 1 172.06 171.56 172.56 -4.7898 0 0 0 0.23508 1 36169 36169 0.26902 0 1 39089 11383 26198 26214 38411 38411 0.06938157205991047 RRLAQAGAAID 11 Unmodified _RRLAQAGAAID_ 0 0 0 REV__HUWE1|p.E3092G|1|0.64|ENSG00000086758|chrX:53551011-53551011|T/C|missense_variant REV__HUWE1|p.E3092G|1|0.64|ENSG00000086758|chrX:53551011-53551011|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2194519042969 3 381.219395 1140.63635 0.17265 6.5817E-05 0.2277 8.6802E-05 0.40035 0.00015262 381.2194376572204 26.926 0.31216 25.291 25.037 25.349 -1.6347 13 8 2 0 0 0 0.78057 1 4487 4487 6.2344 0.83165 1 2852600 + 39090 23643 26199 26215 38412 38412 0.07166139860419207 RRLCECDP 8 Unmodified _RRLCECDP_ 0 0 0 nc|ENSG00000214655|A7E2V4-2|ZSWIM8 nc|ENSG00000214655|A7E2V4-2|ZSWIM8 nc|ENSG00000214655|A7E2V4-2|ZSWIM8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.15325927734375 3 331.153116 990.43752 NaN NaN NaN NaN NaN NaN NaN 106.75 1 102.34 101.84 102.84 -4.4121 0 0 0 0.21486 1 20480 20480 1.6526 0 1 39091 12594 26200 26216 38413 38413 -0.05808160034291632 RRLDIVRSL 9 Unmodified _RRLDIVRSL_ 0 0 0 nc|ENSG00000134086|P40337-3|VHL;nc|ENSG00000134086|P40337-2|VHL;ENSG00000134086|ENST00000256474|VHL nc|ENSG00000134086|P40337-3|VHL nc|ENSG00000134086|P40337-3|VHL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.90667724609375 3 376.571768 1126.69348 -0.28617 -0.00010776 0.24676 9.2923E-05 -0.039411 -1.4841E-05 376.5718102716556 75.515 0.82883 72.1 71.61 72.439 -3.4151 62 23 3 0 0 0 0.27464 1 14792 14792 29.082 11.969 1 8750300 39092 3828 26201 26217 38414 38414 0.13519607136800005 RRLDIVRSL 9 Unmodified _RRLDIVRSL_ 0 0 0 nc|ENSG00000134086|P40337-3|VHL;nc|ENSG00000134086|P40337-2|VHL;ENSG00000134086|ENST00000256474|VHL nc|ENSG00000134086|P40337-3|VHL nc|ENSG00000134086|P40337-3|VHL MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 376.571768 1126.69348 -0.20544 -7.7364E-05 -0.024321 -9.1587E-06 -0.22977 -8.6523E-05 376.5717359459354 72.443 0.55875 72.443 72.089 72.648 0 0.22869 -0.00010338 NaN 29.082 46 15 4 NaN NaN NaN NaN 0 NaN NaN 0 13193000 39093 3828 26201 26217 0.13519607136800005 RRLDIVRSL 9 Unmodified _RRLDIVRSL_ 0 0 0 nc|ENSG00000134086|P40337-3|VHL;nc|ENSG00000134086|P40337-2|VHL;ENSG00000134086|ENST00000256474|VHL nc|ENSG00000134086|P40337-3|VHL nc|ENSG00000134086|P40337-3|VHL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 376.571768 1126.69348 0.11511 4.3347E-05 -0.22022 -8.2929E-05 -0.10511 -3.9582E-05 376.5716752278534 75.854 0.7904 72.131 71.725 72.515 -3.7227 -0.083216 -0.00032469 NaN 29.082 57 22 3 NaN NaN NaN NaN 0 NaN NaN 0 4273400 39094 3828 26201 26217 0.13519607136800005 RRLDIVRSL 9 Unmodified _RRLDIVRSL_ 0 0 0 nc|ENSG00000134086|P40337-3|VHL;nc|ENSG00000134086|P40337-2|VHL;ENSG00000134086|ENST00000256474|VHL nc|ENSG00000134086|P40337-3|VHL nc|ENSG00000134086|P40337-3|VHL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 376.571768 1126.69348 -0.45756 -0.0001723 0.25565 9.6269E-05 -0.20191 -7.6034E-05 376.5718464134926 75.817 0.89757 72.183 71.714 72.611 -3.6337 -0.031372 0.0002129 NaN 29.082 62 25 3 NaN NaN NaN NaN 0 NaN NaN 0 4849300 39095 3828 26201 26217 0.13519607136800005 RRLERNSFICV 11 Unmodified _RRLERNSFICV_ 0 0 0 REV__ENSG00000164604|ENST00000424100|GPR85 REV__ENSG00000164604|ENST00000424100|GPR85 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2487487792969 3 464.922472 1391.74559 0.35639 0.00016569 1.1867 0.00055173 1.5431 0.00071742 464.92251234372935 34.509 0.49334 32.294 32.193 32.686 -2.2158 15 13 2 0 0 0 0.66087 1 6070 6070 1.4551 1.4546 1 924190 + 39096 17693 26202 26218 38415 38415 0.06538402488240536 RRLGLAQKL 9 Unmodified _RRLGLAQKL_ 0 0 0 ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10;ENST00000477882.1_1_X:153197755-153198123:-|nuORF;ENSG00000156269|ENST00000286794|NAA11 ENST00000466877.5_1_X:153197755-153200402:-|nuORF ENST00000466877.5_1_X:153197755-153200402:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.1855163574219 3 352.232975 1053.6771 -0.10462 -3.6849E-05 0.24495 8.628E-05 0.14034 4.9431E-05 352.23290277167825 41.287 0.35396 41.287 41.058 41.412 0 11 9 2 0 0 0 0.47592 1 7717 7717 17.113 7.039 1 649020 39097 2105 26203 26219 38416 38416 0.15240525970693852 RRLGLAQKL 9 Unmodified _RRLGLAQKL_ 0 0 0 ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10;ENST00000477882.1_1_X:153197755-153198123:-|nuORF;ENSG00000156269|ENST00000286794|NAA11 ENST00000466877.5_1_X:153197755-153200402:-|nuORF ENST00000466877.5_1_X:153197755-153200402:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 352.18292236328125 3 352.232975 1053.6771 -0.034305 -1.2083E-05 -0.067248 -2.3687E-05 -0.10155 -3.577E-05 352.23287325326635 44.048 0.31284 41.282 41.149 41.462 -2.7661 13 8 2 0 0 0 0.54058 1 7941 7941 12.241 6.0349 1 818070 39098 2105 26203 26219 38417 38417 0.15240525970693852 RRLGLAQKL 9 Unmodified _RRLGLAQKL_ 0 0 0 ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10;ENST00000477882.1_1_X:153197755-153198123:-|nuORF;ENSG00000156269|ENST00000286794|NAA11 ENST00000466877.5_1_X:153197755-153200402:-|nuORF ENST00000466877.5_1_X:153197755-153200402:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 352.232975 1053.6771 -0.33414 -0.00011769 0.20246 7.1312E-05 -0.13168 -4.6382E-05 352.2329846649765 44.015 0.3745 41.225 41.051 41.425 -2.79 -0.044846 -8.8321E-05 NaN 17.113 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 581760 39099 2105 26203 26219 0.15240525970693852 RRLGLAQKL 9 Unmodified _RRLGLAQKL_ 0 0 0 ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10;ENST00000477882.1_1_X:153197755-153198123:-|nuORF;ENSG00000156269|ENST00000286794|NAA11 ENST00000466877.5_1_X:153197755-153200402:-|nuORF ENST00000466877.5_1_X:153197755-153200402:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 352.232975 1053.6771 -0.74952 -0.000264 0.92196 0.00032474 0.17244 6.074E-05 352.23317651674535 44.032 0.31577 41.284 41.045 41.361 -2.7475 0.014792 0.00067198 NaN 17.113 16 8 2 NaN NaN NaN NaN 0 NaN NaN 0 411590 39100 2105 26203 26219 0.15240525970693852 RRLGRLWRHWW 11 Unmodified _RRLGRLWRHWW_ 0 0 0 ENST00000473038.5_1_1:46033610-46035625:+|nuORF ENST00000473038.5_1_1:46033610-46035625:+|nuORF ENST00000473038.5_1_1:46033610-46035625:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2697143554688 3 541.30776 1620.90145 NaN NaN NaN NaN NaN NaN NaN 124.61 1 119.84 119.34 120.34 -4.7681 0 0 0 0.22632 1 23930 23930 0.094841 0 1 39101 10235 26204 26220 38418 38418 0.11583653844536457 RRLIHAGP 8 Unmodified _RRLIHAGP_ 0 0 0 REV__ENSG00000158859|ENST00000367996|ADAMTS4 REV__ENSG00000158859|ENST00000367996|ADAMTS4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.1903076171875 3 307.190999 918.551168 NaN NaN NaN NaN NaN NaN NaN 87.781 1 83.989 83.489 84.489 -3.7926 0 0 0 0.21486 1 17170 17170 0.45834 0 1 + 39102 17350 26205 26221 38419 38419 0.08863439185267907 RRLKAVAP 8 Unmodified _RRLKAVAP_ 0 0 0 REV__LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant REV__LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.2018737792969 3 304.203016 909.587219 NaN NaN NaN NaN NaN NaN NaN 116.02 1 111.44 110.94 111.94 -4.5815 0 0 0 0.21486 1 22269 22269 0.45834 0 1 + 39103 14854 26206 26222 38420 38420 0.128808963621168 RRLKLFRL 8 Unmodified _RRLKLFRL_ 0 0 0 REV__ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant REV__ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 551.3888549804688 2 551.37201 1100.72947 NaN NaN NaN NaN NaN NaN NaN 131.97 1 131.97 131.47 132.47 0 0 0 0 0.21486 1 26085 26085 0.69038 0 1 + 39104 12881 26207 26223 38421 38421 0.18313109104315117 RRLKRQRHQYW 11 Unmodified _RRLKRQRHQYW_ 0 0 0 REV__nc|ENSG00000089472|Q9BQS7-4|HEPH REV__nc|ENSG00000089472|Q9BQS7-4|HEPH MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 813.6612548828125 2 813.963649 1625.91274 NaN NaN NaN NaN NaN NaN NaN 168.42 1 163.63 163.13 164.13 -4.7898 0 0 0 0.23698 1 34042 34042 0 0 1 + 39105 14530 26208 26224 38422 38422 0.1248243114800971 RRLLHRWRRLR 11 Unmodified _RRLLHRWRRLR_ 0 0 0 REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 540.1589965820312 3 540.009826 1617.00765 NaN NaN NaN NaN NaN NaN NaN 11.983 1 10.988 10.488 11.488 -0.99532 0 0 0 0.23698 1 1630 1630 0.094841 0.094841 1 + 39106 20719 26209 26225 38423 38423 0.2238240940985179 RRLLKKVIGP 10 Unmodified _RRLLKKVIGP_ 0 0 0 REV__ENSG00000180801|ENST00000315366|ARSJ REV__ENSG00000180801|ENST00000315366|ARSJ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2639770507812 2 590.40605 1178.79755 NaN NaN NaN NaN NaN NaN NaN 95.438 1 91.557 91.057 92.057 -3.881 0 0 0 0.22588 1 18311 18311 0.45834 0 1 + 39107 18698 26210 26226 38424 38424 0.21529933964302472 RRLLLLLL 8 Unmodified _RRLLLLLL_ 0 0 0 nc|ENSG00000188803|Q6ZSJ9|SHISA6;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;ENSG00000188803|ENST00000441885|SHISA6;LMTK2-BAIAP2L1|1|fusion;ENSG00000141096|ENST00000268793|DPEP3;LMTK2|p.F540Lfs*16|1|0.31|ENSG00000164715|chr7:98192081-98192081|T/-|frameshift_variant;ENSG00000164715|ENST00000297293|LMTK2;ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000204967|Q9UN74-2|PCDHA4 nc|ENSG00000188803|Q6ZSJ9|SHISA6;ENSG00000204967|ENST00000530339|PCDHA4 ENSG00000204967|ENST00000530339|PCDHA4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 505.249267578125 2 505.365862 1008.71717 0.22551 0.00011397 3.7565 0.0018984 3.982 0.0020124 505.8685490526965 146.98 0.11119 141.98 141.93 142.04 -5 4 2 2 0 0 0 0.9003 1 28440 28440 0 0 1 1451800 39108 7623;7196 26211 26227 38425 38425 0.2131607264128661 RRLLPPLLLL 10 Unmodified _RRLLPPLLLL_ 0 0 0 ENSG00000167619|ENST00000301204|TMEM145;TMEM145|p.R26Afs*20|1|0.22|ENSG00000167619|chr19:42313446-42313446|C/-|frameshift_variant ENSG00000167619|ENST00000301204|TMEM145 ENSG00000167619|ENST00000301204|TMEM145 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2843627929688 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 157.49 1 152.7 152.2 153.2 -4.7885 0 0 0 0.22588 1 31321 31321 0 0 1 39109 5822 26212 26228 38426 38426 0.22939988766893293 RRLLPPLLLL 10 Unmodified _RRLLPPLLLL_ 0 0 0 ENSG00000167619|ENST00000301204|TMEM145;TMEM145|p.R26Afs*20|1|0.22|ENSG00000167619|chr19:42313446-42313446|C/-|frameshift_variant ENSG00000167619|ENST00000301204|TMEM145 ENSG00000167619|ENST00000301204|TMEM145 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2874755859375 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 137.63 1 132.71 132.21 133.21 -4.9216 0 0 0 2.8426 1 26458 26458 0 0 1 39110 5822 26212 26228 38427 38427 0.22939988766893293 RRLNEIDK 8 Unmodified _RRLNEIDK_ 0 0 0 REV__nc|ENSG00000126777|Q86UP2-3|KTN1 REV__nc|ENSG00000126777|Q86UP2-3|KTN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2738647460938 2 522.301447 1042.58834 NaN NaN NaN NaN NaN NaN NaN 138.88 1 134.03 133.53 134.53 -4.8492 0 0 0 0.2325 1 26771 26771 1.7423 0.52744 1 + 39111 15864 26213 26229 38428 38428 0.06875065940357672 RRLNKRWRKLV 11 Unmodified _RRLNKRWRKLV_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;SYNE2|p.N1656Mfs*19|1|0.18|ENSG00000054654|chr14:64017669-64017669|A/-|frameshift_variant;SYNE2|p.M1669Wfs*6|1|0.36|ENSG00000054654|chr14:64017707-64017707|A/-|frameshift_variant;SYNE2|p.K1189Sfs*4|1|0.35|ENSG00000054654|chr14:64000642-64000642|A/-|frameshift_variant;SYNE2|p.K677Nfs*30|1|0.44|ENSG00000054654|chr14:63983760-63983760|A/-|frameshift_variant ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 509.3152770996094 3 508.995182 1523.96372 NaN NaN NaN NaN NaN NaN NaN 173.83 1 168.94 168.44 169.44 -4.8916 0 0 0 0.23698 1 34575 34575 0.094841 0.011491 1 39112 1266 26214 26230 38429 38429 0.22269380192847166 RRLPAANFTRY 11 Unmodified _RRLPAANFTRY_ 0 0 0 TLR3|p.N494Mfs*15|2|0.32|ENSG00000164342|chr4:186083163-186083163|A/-|frameshift_variant;ENSG00000164342|ENST00000296795|TLR3 TLR3|p.N494Mfs*15|2|0.32|ENSG00000164342|chr4:186083163-186083163|A/-|frameshift_variant TLR3|p.N494Mfs*15|2|0.32|ENSG00000164342|chr4:186083163-186083163|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 455.2160949707031 3 455.58971 1363.7473 0.090911 4.1418E-05 -0.85489 -0.00038948 -0.76398 -0.00034806 455.58919889090345 59.325 0.59192 56.101 55.769 56.361 -3.2237 43 16 4 0 0 0 0.89074 1 11124 11124 0.50596 0 1 4319600 39113 5538 26215 26231 38430 38430 0.07997779568495389 RRLPPPPP 8 Unmodified _RRLPPPPP_ 0 0 0 ZC3H3|p.A786Rfs*113|1|0.18|ENSG00000014164|chr8:143441072-143441072|C/-|frameshift_variant;ENSG00000177283|ENST00000374694|FZD8 REV__DACH1|p.P16Lfs*178|1|0.44|ENSG00000276644|chr13:71866723-71866723|G/-|frameshift_variant;REV__ENST00000338779.10_1_16:70695390-70695915:-|nuORF;ENSG00000177283|ENST00000374694|FZD8 REV__ENST00000338779.10_1_16:70695390-70695915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2494812011719 2 465.287611 928.56067 NaN NaN NaN NaN NaN NaN NaN 108.32 1 104 103.5 104.5 -4.32 0 0 0 0.22722 1 21342 21342 3.5871 0 1 39114 20684;13635;6504 26216 26232 38431 38431 0.09353207470792313 RRLQEPIVL 9 Unmodified _RRLQEPIVL_ 0 0 0 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;ENST00000497103.1_1_10:32101629-32132466:-|nuORF nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.22076416015625 3 375.236385 1122.68733 0.1853 6.953E-05 -0.27047 -0.00010149 -0.085171 -3.1959E-05 375.23626660356615 94.552 0.77252 90.36 89.912 90.685 -4.1911 28 21 2 0 0 0 0.31598 1 18023 18023 30.703 17.185 1 1838100 39115 5618 26217 26233 38432 38432 0.13089088905257995 RRLQEPIVL 9 Unmodified _RRLQEPIVL_ 0 0 0 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;ENST00000497103.1_1_10:32101629-32132466:-|nuORF nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.236385 1122.68733 -0.21445 -8.0469E-05 0.14552 5.4605E-05 -0.068928 -2.5864E-05 375.236424451366 94.482 0.76897 90.491 89.966 90.735 -3.9907 0.072911 -8.5381E-05 NaN 30.703 46 21 3 NaN NaN NaN NaN 0 NaN NaN 0 2740200 39116 5618 26217 26233 0.13089088905257995 RRLQLLLQQP 10 Unmodified _RRLQLLLQQP_ 0 0 0 REV__ENST00000507175.5_1_5:145838810-145843302:+|nuORF REV__ENST00000507175.5_1_5:145838810-145843302:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 632.9407958984375 2 632.896046 1263.77754 NaN NaN NaN NaN NaN NaN NaN 170.45 1 165.58 165.08 166.08 -4.873 0 0 0 0.22576 1 33731 33731 14.838 6.0929 1 + 39117 22499 26218 26234 38433 38433 0.15620138233703074 RRLQTKTA 8 Unmodified _RRLQTKTA_ 0 0 0 KIF20B|p.R1815Q|1|0.18|ENSG00000138182|chr10:89774029-89774029|G/A|missense_variant KIF20B|p.R1815Q|1|0.18|ENSG00000138182|chr10:89774029-89774029|G/A|missense_variant KIF20B|p.R1815Q|1|0.18|ENSG00000138182|chr10:89774029-89774029|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 325.201416015625 3 325.201564 972.582862 NaN NaN NaN NaN NaN NaN NaN 137.62 1 132.78 132.28 133.28 -4.84 0 0 0 0.21486 1 26516 26516 0.40072 0 1 39118 12000 26219 26235 38434 38434 0.09547387148552389 RRLRKPKI 8 Unmodified _RRLRKPKI_ 0 0 0 nc|ENSG00000122224|Q9HBG7-2|LY9;nc|ENSG00000122224|Q9HBG7-4|LY9;ENSG00000122224|ENST00000263285|LY9 nc|ENSG00000122224|Q9HBG7-2|LY9 nc|ENSG00000122224|Q9HBG7-2|LY9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2706909179688 2 533.869634 1065.72472 -0.026647 -1.4226E-05 -1.2656 -0.00067566 -1.2922 -0.00068988 534.3702517330062 48.463 0.17608 45.513 45.365 45.541 -2.9499 5 4 2 0 0 0 0.9003 1 8869 8869 0 0 1 232390 39119 3216 26220 26236 38435 38435 0.19448224961547567 RRLRLRLL 8 Unmodified _RRLRLRLL_ 0 0 0 DACH1|p.P16Lfs*178|1|0.44|ENSG00000276644|chr13:71866723-71866723|G/-|frameshift_variant;ENSG00000205502|ENST00000380392|C2CD4B DACH1|p.P16Lfs*178|1|0.44|ENSG00000276644|chr13:71866723-71866723|G/-|frameshift_variant DACH1|p.P16Lfs*178|1|0.44|ENSG00000276644|chr13:71866723-71866723|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 365.92938232421875 3 365.924365 1094.75126 NaN NaN NaN NaN NaN NaN NaN 10.187 1 9.1206 8.6206 9.6206 -1.0664 0 0 0 0.21486 1 1088 1088 0 0 1 39120 777 26221 26237 38436 38436 0.20767913852864694 RRLRLRLL 8 Unmodified _RRLRLRLL_ 0 0 0 DACH1|p.P16Lfs*178|1|0.44|ENSG00000276644|chr13:71866723-71866723|G/-|frameshift_variant;ENSG00000205502|ENST00000380392|C2CD4B DACH1|p.P16Lfs*178|1|0.44|ENSG00000276644|chr13:71866723-71866723|G/-|frameshift_variant DACH1|p.P16Lfs*178|1|0.44|ENSG00000276644|chr13:71866723-71866723|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 365.923583984375 3 365.924365 1094.75126 NaN NaN NaN NaN NaN NaN NaN 10.867 1 9.801 9.301 10.301 -1.0664 0 0 0 0.21486 1 1198 1198 0 0 1 39121 777 26221 26237 38437 38437 0.20767913852864694 RRLRRRHRHLL 11 Unmodified _RRLRRRHRHLL_ 0 0 0 REV__ENSG00000110719|ENST00000265686|TCIRG1 REV__ENSG00000110719|ENST00000265686|TCIRG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6845703125 3 523.669692 1567.98725 NaN NaN NaN NaN NaN NaN NaN 140.1 1 140.1 139.6 140.6 0 0 0 0 0.23698 1 27874 27874 0.094841 0.011491 1 + 39122 15214 26222 26238 38438 38438 0.2259723875004056 RRLRRRHRHLL 11 Unmodified _RRLRRRHRHLL_ 0 0 0 REV__ENSG00000110719|ENST00000265686|TCIRG1 REV__ENSG00000110719|ENST00000265686|TCIRG1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.385498046875 2 785.0009 1567.98725 NaN NaN NaN NaN NaN NaN NaN 165.94 1 161.15 160.65 161.65 -4.7898 0 0 0 0.22632 1 33277 33277 0 0 1 + 39123 15214 26222 26238 38439 38439 0.2259723875004056 RRLRRRQRLRR 11 Unmodified _RRLRRRQRLRR_ 0 0 0 REV__ENSG00000171119|ENST00000303212|NRTN REV__ENSG00000171119|ENST00000303212|NRTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.369384765625 2 811.530356 1621.04616 NaN NaN NaN NaN NaN NaN NaN 169.65 1 169.65 169.15 170.15 0 0 0 0 0.22632 1 34830 34830 0.0072825 0 1 + 39124 18202 26223 26239 38440 38440 0.2604771504434211 RRLRRRQRLRR 11 Unmodified _RRLRRRQRLRR_ 0 0 0 REV__ENSG00000171119|ENST00000303212|NRTN REV__ENSG00000171119|ENST00000303212|NRTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3569946289062 2 811.530356 1621.04616 NaN NaN NaN NaN NaN NaN NaN 166.64 1 161.66 161.16 162.16 -4.9811 0 0 0 0.23698 1 32688 32688 0 0 1 + 39125 18202 26223 26239 38441 38441 0.2604771504434211 RRLRRRQRLRR 11 Unmodified _RRLRRRQRLRR_ 0 0 0 REV__ENSG00000171119|ENST00000303212|NRTN REV__ENSG00000171119|ENST00000303212|NRTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3734741210938 2 811.530356 1621.04616 NaN NaN NaN NaN NaN NaN NaN 166.67 1 161.68 161.18 162.18 -4.9807 0 0 0 0.22632 1 32699 32699 0 0 1 + 39126 18202 26223 26239 38442 38442 0.2604771504434211 RRLRRRQRLRR 11 Unmodified _RRLRRRQRLRR_ 0 0 0 REV__ENSG00000171119|ENST00000303212|NRTN REV__ENSG00000171119|ENST00000303212|NRTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3629760742188 2 811.530356 1621.04616 NaN NaN NaN NaN NaN NaN NaN 172.87 1 167.99 167.49 168.49 -4.881 0 0 0 0.22632 1 34341 34341 0 0 1 + 39127 18202 26223 26239 38443 38443 0.2604771504434211 RRLWKFFWEMA 11 Unmodified _RRLWKFFWEMA_ 0 0 0 nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.408447265625 2 785.411006 1568.80746 NaN NaN NaN NaN NaN NaN NaN 22.193 1 22.193 21.693 22.693 0 0 0 0 0.23698 1 3745 3745 0.30703 0.30703 1 39128 2844 26224 26240 38444 38444 0.04580753907362123 RRLWKFFWEMA 11 Unmodified _RRLWKFFWEMA_ 0 0 0 nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4107055664062 2 785.411006 1568.80746 NaN NaN NaN NaN NaN NaN NaN 107.58 1 103.17 102.67 103.67 -4.4121 0 0 0 0.23698 1 20643 20643 0.35063 0 1 39129 2844 26224 26240 38445 38445 0.04580753907362123 RRLYDEQAEVY 11 Unmodified _RRLYDEQAEVY_ 0 0 0 REV__NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant REV__NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2434387207031 3 481.240524 1440.69974 NaN NaN NaN NaN NaN NaN NaN 110.48 1 110.48 109.98 110.98 0 0 0 0 0.22632 1 21729 21729 0.172 0 1 + 39130 19251 26225 26241 38446 38446 -0.002979642129957938 RRLYQKEW 8 Unmodified _RRLYQKEW_ 0 0 0 ENST00000532168.2_1_11:112151431-112162265:+|nuORF;ENST00000529938.1_1_11:112161989-112162265:+|nuORF ENST00000532168.2_1_11:112151431-112162265:+|nuORF ENST00000532168.2_1_11:112151431-112162265:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2696533203125 2 589.825089 1177.63563 NaN NaN NaN NaN NaN NaN NaN 168.43 1 168.43 167.93 168.93 0 0 0 0 0.23782 1 34492 34492 0.12286 0.049601 1 39131 10951 26226 26242 38447 38447 0.05391345211364751 RRMDVFTEA 9 Unmodified _RRMDVFTEA_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.13946533203125 3 375.522086 1123.54443 -0.47242 -0.0001774 0.57481 0.00021585 0.1024 3.8452E-05 375.5223679948254 61.916 0.4758 61.916 61.597 62.073 0 18 13 2 0 0 0 0.47592 1 11841 11841 17.113 14.614 1 1215300 39132 7692 26227 26243 38448 38448 -0.012402865482499692 RRMDVFTEA 9 Unmodified _RRMDVFTEA_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.22015380859375 3 375.522086 1123.54443 -0.21172 -7.9504E-05 0.39074 0.00014673 0.17902 6.7226E-05 375.52218530502074 64.893 0.68295 61.846 61.456 62.139 -3.047 32 19 2 0 0 0 0.54933 1 12547 12547 16.566 8.9569 1 1611400 39133 7692 26227 26243 38449 38449 -0.012402865482499692 RRMDVFTEA 9 Unmodified _RRMDVFTEA_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21209716796875 3 375.522086 1123.54443 -0.38376 -0.00014411 0.50556 0.00018985 0.12181 4.5741E-05 375.522304659752 65.104 0.57391 61.821 61.454 62.028 -3.2832 36 16 3 0 0 0 0.58921 1 12192 12192 8.1555 6.2492 1 1444000 39134 7692 26227 26243 38450 38450 -0.012402865482499692 RRMDVFTEA 9 Unmodified _RRMDVFTEA_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.522086 1123.54443 0.22989 8.6329E-05 -0.27327 -0.00010262 -0.043381 -1.629E-05 375.5219838552729 65.3 0.63158 61.842 61.471 62.102 -3.4581 -0.014386 -0.00062826 NaN 17.113 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2319900 39135 7692 26227 26243 -0.012402865482499692 RRMEVYNEF 9 Unmodified _RRMEVYNEF_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10;ENST00000417796.1_1_9:84702254-84702629:-|nuORF ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7521362304688 2 622.298047 1242.58154 0.29017 0.00018057 -0.00023129 -1.4393E-07 0.28994 0.00018043 622.2982189248304 71.569 0.81055 71.569 71.349 72.16 0 55 22 4 0 0 0 6.9608E-05 2 13885 13885;13949 128.93 99.851 1 18644000 39136 6557 26228 26244 38451;38452 38451 -0.030046150025327734 RRMEVYNEF 9 Unmodified _RRMEVYNEF_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10;ENST00000417796.1_1_9:84702254-84702629:-|nuORF ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7631225585938 2 622.298047 1242.58154 0.90463 0.00056295 -0.55683 -0.00034651 0.3478 0.00021643 622.29776497002 75.014 1.1117 71.65 71.272 72.383 -3.3643 78 31 5 0 0 0 0.0024928 2 14652 14650;14652 117.76 90.132 1 17845000 39137 6557 26228 26244 38453;38454 38454 -0.030046150025327734 RRMEVYNEF 9 Unmodified _RRMEVYNEF_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10;ENST00000417796.1_1_9:84702254-84702629:-|nuORF ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.76611328125 2 622.298047 1242.58154 0.37726 0.00023477 -0.12014 -7.4763E-05 0.25712 0.00016001 622.2980993242206 75.318 0.69977 71.595 71.197 71.897 -3.7227 56 19 4 0 0 0 0.6226 1 14305 14305 4.897 4.8237 1 17912000 39138 6557 26228 26244 38455 38455 -0.030046150025327734 RRMEVYNEF 9 Unmodified _RRMEVYNEF_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10;ENST00000417796.1_1_9:84702254-84702629:-|nuORF ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7779541015625 2 622.298047 1242.58154 0.48126 0.00029948 -0.33451 -0.00020817 0.14674 9.1318E-05 622.2979774718441 75.218 0.66156 71.585 71.23 71.891 -3.6337 53 18 4 0 0 0 0.00017431 1 14310 14310 121.35 86.944 1 17276000 39139 6557 26228 26244 38456 38456 -0.030046150025327734 RRMKRRRRWIQ 11 Unmodified _RRMKRRRRWIQ_ 0 0 0 ENST00000257749.8_2_6:90661229-90661412:-|nuORF ENST00000257749.8_2_6:90661229-90661412:-|nuORF ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7727661132812 3 547.998821 1640.97463 NaN NaN NaN NaN NaN NaN NaN 70.938 1 70.938 70.438 71.438 0 0 0 0 0.22632 1 13740 13740 0 0 1 39140 8266 26229 26245 38457 38457 0.17978459295522953 RRMKRRRRWIQ 11 Unmodified _RRMKRRRRWIQ_ 0 0 0 ENST00000257749.8_2_6:90661229-90661412:-|nuORF ENST00000257749.8_2_6:90661229-90661412:-|nuORF ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77197265625 3 547.998821 1640.97463 NaN NaN NaN NaN NaN NaN NaN 38.309 1 35.904 35.404 36.404 -2.4049 0 0 0 0.22632 1 6812 6812 0 0 1 39141 8266 26229 26245 38458 38458 0.17978459295522953 RRMRRRNRHQR 11 Unmodified _RRMRRRNRHQR_ 0 0 0 ENST00000541683.1_1_11:61582434-61582803:-|nuORF ENST00000541683.1_1_11:61582434-61582803:-|nuORF ENST00000541683.1_1_11:61582434-61582803:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2745361328125 3 541.313691 1620.91924 NaN NaN NaN NaN NaN NaN NaN 153.01 1 153.01 152.51 153.51 0 0 0 0 0.22632 1 30653 30653 0.094841 0.068635 1 39142 11081 26230 26246 38459 38459 0.13362045827739166 RRMRRRRRWTR 11 Unmodified _RRMRRRRRWTR_ 0 0 0 ENST00000281708.8_1_4:153271275-153332654:-|nuORF ENST00000281708.8_1_4:153271275-153332654:-|nuORF ENST00000281708.8_1_4:153271275-153332654:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3973388671875 2 843.500741 1684.98693 NaN NaN NaN NaN NaN NaN NaN 171.06 1 166.27 165.77 166.77 -4.7898 0 0 0 0.22632 1 34755 34755 0.094841 0 1 39143 8443 26231 26247 38460 38460 0.17183495758536083 RRMRRRRRWTR 11 Unmodified _RRMRRRRRWTR_ 0 0 0 ENST00000281708.8_1_4:153271275-153332654:-|nuORF ENST00000281708.8_1_4:153271275-153332654:-|nuORF ENST00000281708.8_1_4:153271275-153332654:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3973388671875 2 843.500741 1684.98693 NaN NaN NaN NaN NaN NaN NaN 171.07 1 166.28 165.78 166.78 -4.7898 0 0 0 0.23698 1 34758 34758 0 0 1 39144 8443 26231 26247 38461 38461 0.17183495758536083 RRMRRRRRWTR 11 Unmodified _RRMRRRRRWTR_ 0 0 0 ENST00000281708.8_1_4:153271275-153332654:-|nuORF ENST00000281708.8_1_4:153271275-153332654:-|nuORF ENST00000281708.8_1_4:153271275-153332654:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.4034423828125 2 843.500741 1684.98693 NaN NaN NaN NaN NaN NaN NaN 168.95 1 164.08 163.58 164.58 -4.873 0 0 0 0.22632 1 33348 33348 0 0 1 39145 8443 26231 26247 38462 38462 0.17183495758536083 RRMWKWLQ 8 Unmodified _RRMWKWLQ_ 0 0 0 ENSG00000119547|ENST00000491143|ONECUT2;ENSG00000205922|ENST00000382349|ONECUT3;ENSG00000169856|ENST00000305901|ONECUT1 ENSG00000119547|ENST00000491143|ONECUT2 ENSG00000119547|ENST00000491143|ONECUT2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.281005859375 2 602.332027 1202.6495 NaN NaN NaN NaN NaN NaN NaN 154.56 1 154.56 154.06 155.06 0 0 0 0 0.23664 1 30978 30978 0.62683 0.45483 1 39146 3085 26232 26248 38463 38463 0.05628299438808426 RRNAFNKRKFF 11 Unmodified _RRNAFNKRKFF_ 0 0 0 tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1 tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1 tr|U7SZF2|U7SZF2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00804PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3680419921875 2 742.423294 1482.83203 NaN NaN NaN NaN NaN NaN NaN 132.07 1 132.07 131.57 132.57 0 0 0 0 0.23379 1 26105 26105 5.2969 2.0156 1 39147 26294 26233 26249 38464 38464 0.1099315010508235 RRNDSIYEA 9 Unmodified _RRNDSIYEA_ 0 0 0 nc|ENSG00000141971|Q96EY5-2|MVB12A;nc|ENSG00000141971|Q96EY5-3|MVB12A;ENSG00000141971|ENST00000317040|MVB12A nc|ENSG00000141971|Q96EY5-2|MVB12A nc|ENSG00000141971|Q96EY5-2|MVB12A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2227478027344 3 375.187871 1122.54179 -0.50987 -0.0001913 0.15467 5.8031E-05 -0.3552 -0.00013327 375.187916323473 27.431 0.56636 25.509 25.294 25.861 -1.9222 28 15 2 0 0 0 0.46796 1 4553 4553 21.59 4.1475 1 7062200 39148 4403 26234 26250 38465 38465 -0.014584186815682187 RRNFRNWRRWR 11 Unmodified _RRNFRNWRRWR_ 0 0 0 REV__nc|ENSG00000157388|Q01668-3|CACNA1D REV__nc|ENSG00000157388|Q01668-3|CACNA1D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 568.3148803710938 3 568.317318 1701.93013 NaN NaN NaN NaN NaN NaN NaN 8.1389 1 7.4597 6.9597 7.9597 -0.67913 0 0 0 0.22632 1 815 815 0 0 1 + 39149 17296 26235 26251 38466 38466 0.10723771473635679 RRNGHNSP 8 Unmodified _RRNGHNSP_ 0 0 0 ENST00000522964.1_1_5:150567004-150581174:-|nuORF ENST00000522964.1_1_5:150567004-150581174:-|nuORF ENST00000522964.1_1_5:150567004-150581174:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.1511535644531 3 313.16188 936.463809 NaN NaN NaN NaN NaN NaN NaN 20.801 1 19.416 18.916 19.916 -1.3847 0 0 0 0.21486 1 3242 3242 0.45834 0 1 39150 10866 26236 26252 38467 38467 -0.006963867563058557 RRNGHNSP 8 Unmodified _RRNGHNSP_ 0 0 0 ENST00000522964.1_1_5:150567004-150581174:-|nuORF ENST00000522964.1_1_5:150567004-150581174:-|nuORF ENST00000522964.1_1_5:150567004-150581174:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.1684265136719 3 313.16188 936.463809 NaN NaN NaN NaN NaN NaN NaN 57.779 1 54.527 54.027 55.027 -3.2517 0 0 0 0.21486 1 10731 10731 1.6526 0 1 39151 10866 26236 26252 38468 38468 -0.006963867563058557 RRNGHNSP 8 Unmodified _RRNGHNSP_ 0 0 0 ENST00000522964.1_1_5:150567004-150581174:-|nuORF ENST00000522964.1_1_5:150567004-150581174:-|nuORF ENST00000522964.1_1_5:150567004-150581174:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.16204833984375 3 313.16188 936.463809 NaN NaN NaN NaN NaN NaN NaN 45.166 1 42.333 41.833 42.833 -2.8327 0 0 0 0.21486 1 8193 8193 1.6526 0 1 39152 10866 26236 26252 38469 38469 -0.006963867563058557 RRNGHNSP 8 Unmodified _RRNGHNSP_ 0 0 0 ENST00000522964.1_1_5:150567004-150581174:-|nuORF ENST00000522964.1_1_5:150567004-150581174:-|nuORF ENST00000522964.1_1_5:150567004-150581174:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.16204833984375 3 313.16188 936.463809 NaN NaN NaN NaN NaN NaN NaN 51.018 1 47.966 47.466 48.466 -3.0517 0 0 0 0.21486 1 9391 9391 1.6526 0 1 39153 10866 26236 26252 38470 38470 -0.006963867563058557 RRNGHNSP 8 Unmodified _RRNGHNSP_ 0 0 0 ENST00000522964.1_1_5:150567004-150581174:-|nuORF ENST00000522964.1_1_5:150567004-150581174:-|nuORF ENST00000522964.1_1_5:150567004-150581174:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.16180419921875 3 313.16188 936.463809 NaN NaN NaN NaN NaN NaN NaN 57.184 1 54.008 53.508 54.508 -3.1761 0 0 0 0.21486 1 10654 10654 1.6526 0 1 39154 10866 26236 26252 38471 38471 -0.006963867563058557 RRNKFKYLIDH 11 Unmodified _RRNKFKYLIDH_ 0 0 0 AXDND1|p.L501Yfs*14|1|0.28|ENSG00000162779|chr1:179432278-179432278|T/-|frameshift_variant;AXDND1|p.N583Vfs*2|1|0.1|ENSG00000162779|chr1:179445152-179445153|-/GTCT|frameshift_variant;ENSG00000162779|ENST00000367618|AXDND1 AXDND1|p.L501Yfs*14|1|0.28|ENSG00000162779|chr1:179432278-179432278|T/-|frameshift_variant AXDND1|p.L501Yfs*14|1|0.28|ENSG00000162779|chr1:179432278-179432278|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 497.7120361328125 3 497.284398 1488.83137 NaN NaN NaN NaN NaN NaN NaN 172.3 1 167.52 167.02 168.02 -4.7898 0 0 0 0.22632 1 35094 35094 0.2986 0 1 39155 284 26237 26253 38472 38472 0.10650310665414509 RRNNVVITV 9 Unmodified _RRNNVVITV_ 0 0 0 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;CD109|p.Q395H|1|0.29|ENSG00000156535|chr6:73766007-73766007|G/T|missense_variant;CD109|p.Q424Kfs*20|1|0.29|ENSG00000156535|chr6:73766088-73766088|C/-|frameshift_variant;nc|ENSG00000156535|Q6YHK3-3|CD109 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5523681640625 3 357.552485 1069.63563 -0.34994 -0.00012512 0.4065 0.00014535 0.056562 2.0224E-05 357.5525093213161 58.288 0.6513 55.377 55.032 55.683 -2.9105 28 18 2 0 0 0 0.5685 1 11173 11173 15.248 9.0427 1 776350 39156 438 26238 26254 38473 38473 0.10359345211350046 RRNNVVITV 9 Unmodified _RRNNVVITV_ 0 0 0 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;CD109|p.Q395H|1|0.29|ENSG00000156535|chr6:73766007-73766007|G/T|missense_variant;CD109|p.Q424Kfs*20|1|0.29|ENSG00000156535|chr6:73766088-73766088|C/-|frameshift_variant;nc|ENSG00000156535|Q6YHK3-3|CD109 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5522155761719 3 357.552485 1069.63563 NaN NaN NaN NaN NaN NaN NaN 58.648 1 55.396 54.896 55.896 -3.2517 0 0 0 0.23508 1 10900 10900 10.8 0 1 39157 438 26238 26254 38474 38474 0.10359345211350046 RRNNVVITV 9 Unmodified _RRNNVVITV_ 0 0 0 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;CD109|p.Q395H|1|0.29|ENSG00000156535|chr6:73766007-73766007|G/T|missense_variant;CD109|p.Q424Kfs*20|1|0.29|ENSG00000156535|chr6:73766088-73766088|C/-|frameshift_variant;nc|ENSG00000156535|Q6YHK3-3|CD109 CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5527038574219 3 357.552485 1069.63563 NaN NaN NaN NaN NaN NaN NaN 58.61 1 55.404 54.904 55.904 -3.2052 0 0 0 0.21434 1 10940 10940 19.362 8.5624 1 39158 438 26238 26254 38475 38475 0.10359345211350046 RRNPEPLRF 9 Unmodified _RRNPEPLRF_ 0 0 0 nc|ENSG00000151366|O95298-3|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-3|NDUFC2 nc|ENSG00000151366|O95298-3|NDUFC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.1865234375 3 395.559751 1183.65742 -0.34878 -0.00013796 -0.37711 -0.00014917 -0.72589 -0.00028713 395.55964470402404 50.806 1.9557 47.924 47.181 49.136 -2.8824 151 55 5 0 0 0 0.48307 1 9655 9655 40.239 26.021 1 99425000 39159 4864 26239 26255 38476 38476 0.07294149959921015 RRNPEPLRF 9 Unmodified _RRNPEPLRF_ 0 0 0 nc|ENSG00000151366|O95298-3|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-3|NDUFC2 nc|ENSG00000151366|O95298-3|NDUFC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 395.2240905761719 3 395.559751 1183.65742 0.029112 1.1516E-05 -0.73886 -0.00029226 -0.70975 -0.00028075 395.55949594882213 50.796 1.938 47.75 47.057 48.995 -3.0453 163 55 5 0 0 0 0.48307 1 9354 9354 33.445 25.836 1 94162000 39160 4864 26239 26255 38477 38477 0.07294149959921015 RRNPEPLRF 9 Unmodified _RRNPEPLRF_ 0 0 0 nc|ENSG00000151366|O95298-3|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-3|NDUFC2 nc|ENSG00000151366|O95298-3|NDUFC2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 395.559751 1183.65742 0.26181 0.00010356 -0.96286 -0.00038087 -0.70105 -0.00027731 395.5593986606126 48.168 1.6918 48.168 47.505 49.197 0 0.22064 -0.00025989 NaN 40.239 146 47 5 NaN NaN NaN NaN 0 NaN NaN 0 97943000 39161 4864 26239 26255 0.07294149959921015 RRNRIRRN 8 Unmodified _RRNRIRRN_ 0 0 0 REV__ENST00000443585.5_1_12:105724662-105759611:+|nuORF REV__ENST00000443585.5_1_12:105724662-105759611:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 380.73101806640625 3 380.902623 1139.68604 NaN NaN NaN NaN NaN NaN NaN 52.404 1 52.404 51.904 52.904 0 0 0 0 0.23664 1 9961 9961 3.2813 0.78282 1 + 39162 21732 26240 26256 38478 38478 0.12178312379751333 RRPATRELKWE 11 Unmodified _RRPATRELKWE_ 0 0 0 REV__nc|ENSG00000164287|Q86Y33-3|CDC20B REV__nc|ENSG00000164287|Q86Y33-3|CDC20B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2396240234375 3 481.27227 1440.79498 NaN NaN NaN NaN NaN NaN NaN 91.522 1 91.522 91.022 92.022 0 0 0 0 0.22632 1 17887 17887 0.172 0 1 + 39163 17667 26241 26257 38479 38479 0.09221433768698262 RRPEKLRTQRV 11 Unmodified _RRPEKLRTQRV_ 0 0 0 ENST00000472723.1_1_9:130497234-130497549:-|nuORF ENST00000472723.1_1_9:130497234-130497549:-|nuORF ENST00000472723.1_1_9:130497234-130497549:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2130432128906 4 360.473292 1437.86406 0.33324 0.00012012 -0.55394 -0.00019968 -0.2207 -7.9556E-05 360.72375905922337 30.292 0.41975 28.399 28.207 28.627 -1.8928 21 11 2 0 0 0 0.89134 1 5154 5154 0.094841 0 1 1866700 39164 10228 26242 26258 38480 38480 0.16264517788249577 RRPEKLRTQRV 11 Unmodified _RRPEKLRTQRV_ 0 0 0 ENST00000472723.1_1_9:130497234-130497549:-|nuORF ENST00000472723.1_1_9:130497234-130497549:-|nuORF ENST00000472723.1_1_9:130497234-130497549:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 360.473292 1437.86406 -0.1921 -6.9247E-05 0.1004 3.6192E-05 -0.091697 -3.3054E-05 360.4733147368321 28.164 1.2495 28.164 27.665 28.914 0 -0.1461 0.00047737 NaN 0.094841 34 10 4 NaN NaN NaN NaN 0 NaN NaN 0 2090700 39165 10228 26242 26258 0.16264517788249577 RRPEKLRTQRV 11 Unmodified _RRPEKLRTQRV_ 0 0 0 ENST00000472723.1_1_9:130497234-130497549:-|nuORF ENST00000472723.1_1_9:130497234-130497549:-|nuORF ENST00000472723.1_1_9:130497234-130497549:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 360.473292 1437.86406 -0.14433 -5.2025E-05 0.017785 6.4109E-06 -0.12654 -4.5614E-05 360.4732881144802 30.406 0.42541 28.332 28.11 28.535 -2.0743 0.022021 0.00035825 NaN 0.094841 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1002700 39166 10228 26242 26258 0.16264517788249577 RRPGPPGPSA 10 Unmodified _RRPGPPGPSA_ 0 0 0 REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant REV__KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 331.1866760253906 3 331.185914 990.535912 NaN NaN NaN NaN NaN NaN NaN 66.394 1 63.067 62.567 63.567 -3.3268 0 0 0 0.22588 1 12499 12499 1.7423 0.54893 1 + 39167 19919 26243 26259 38481 38481 0.040265275974206816 RRPKRRRRKRA 11 Unmodified _RRPKRRRRKRA_ 0 0 0 ENST00000560168.1_1_19:46269581-46272089:-|nuORF ENST00000560168.1_1_19:46269581-46272089:-|nuORF ENST00000560168.1_1_19:46269581-46272089:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 768.5067749023438 2 768.506349 1534.99815 NaN NaN NaN NaN NaN NaN NaN 54.971 1 52.088 51.588 52.588 -2.8837 0 0 0 0.23698 1 10505 10505 0 0 1 39168 11283 26244 26260 38482 38482 0.2520464112433274 RRPLIRQD 8 Unmodified _RRPLIRQD_ 0 0 0 LRRC7|p.L935*|1|0.36|ENSG00000033122|chr1:70038736-70038736|C/-|frameshift_variant;LRRC7|p.V1027Sfs*5|2|0.41|ENSG00000033122|chr1:70039009-70039010|-/A|frameshift_variant;LRRC7|p.V1027Sfs*16|1|0.28|ENSG00000033122|chr1:70039010-70039010|A/-|frameshift_variant;nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7 LRRC7|p.L935*|1|0.36|ENSG00000033122|chr1:70038736-70038736|C/-|frameshift_variant LRRC7|p.L935*|1|0.36|ENSG00000033122|chr1:70038736-70038736|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.88092041015625 3 351.880713 1052.62031 NaN NaN NaN NaN NaN NaN NaN 6.8346 1 5.79 5.29 6.29 -1.0446 0 0 0 0.21486 1 522 522 1.4819 0 1 39169 1161 26245 26261 38483 38483 0.09610478414197132 RRPLKRVHRA 10 Unmodified _RRPLKRVHRA_ 0 0 0 ENST00000304920.3_1_13:21296082-21296283:+|nuORF ENST00000304920.3_1_13:21296082-21296283:+|nuORF ENST00000304920.3_1_13:21296082-21296283:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 644.9362182617188 2 644.912896 1287.81124 NaN NaN NaN NaN NaN NaN NaN 173.48 1 168.69 168.19 169.19 -4.7898 0 0 0 2.8426 1 35393 35393 0.043787 0 1 39170 8594 26246 26262 38484 38484 0.1788460451609808 RRPLLPGN 8 Unmodified _RRPLLPGN_ 0 0 0 REV__ENST00000367577.6_2_1:181059582-181059666:+|nuORF REV__ENST00000367577.6_2_1:181059582-181059666:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5309753417969 2 461.782693 921.550834 0.63747 0.00029437 -0.39982 -0.00018463 0.23765 0.00010974 461.7824379737972 79.182 0.65539 79.182 78.889 79.545 0 33 18 2 0 0 0 0.89687 1 15385 15385 3.2813 0 1 2575400 + 39171 20926 26247 26263 38485 38485 0.08692019465422618 RRPLRLLY 8 Unmodified _RRPLRLLY_ 0 0 0 ENSG00000167178|ENST00000453268|ISLR2 ENSG00000167178|ENST00000453268|ISLR2 ENSG00000167178|ENST00000453268|ISLR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7800903320312 2 543.848368 1085.68218 NaN NaN NaN NaN NaN NaN NaN 65.239 1 61.956 61.456 62.456 -3.2832 0 0 0 0.2396 1 12261 12261 0.12286 0 1 39172 5793 26248 26264 38486 38486 0.14276829833306692 RRPLRRRSERW 11 Unmodified _RRPLRRRSERW_ 0 0 0 ENST00000376771.8_1_X:48398216-48399763:+|nuORF ENST00000376771.8_1_X:48398216-48399763:+|nuORF ENST00000376771.8_1_X:48398216-48399763:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6922607421875 3 523.309941 1566.90799 -0.11371 -5.9504E-05 -2.77 -0.0014495 -2.8837 -0.001509 523.3072595938074 59.594 0.35276 59.594 59.468 59.821 0 10 9 2 0 0 0 0.89128 1 11446 11446 0.026206 0 1 1148800 39173 9256 26249 26265 38487 38487 0.14721547005228786 RRPNATLIL 9 Unmodified _RRPNATLIL_ 0 0 0 B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant;ENSG00000179913|ENST00000318683|B3GNT3 B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.2383117675781 3 351.889097 1052.64546 0.14868 5.232E-05 -0.2621 -9.2231E-05 -0.11342 -3.9911E-05 351.8889777280741 79.216 0.90344 79.216 78.784 79.687 0 64 25 3 0 0 0 0.25976 1 15369 15369 17.113 6.9623 1 6882900 39174 289 26250 26266 38488 38488 0.1212453321677458 RRPNATLIL 9 Unmodified _RRPNATLIL_ 0 0 0 B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant;ENSG00000179913|ENST00000318683|B3GNT3 B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 351.88446044921875 3 351.889097 1052.64546 -0.82359 -0.00028981 0.8217 0.00028915 -0.0018905 -6.6523E-07 351.889323274356 82.246 0.79218 78.547 78.177 78.969 -3.6985 59 22 3 0 0 0 0.15889 1 15712 15712 36.81 17.184 1 5177300 39175 289 26250 26266 38489 38489 0.1212453321677458 RRPPSGPLP 9 Unmodified _RRPPSGPLP_ 0 0 0 REV__ENSG00000184557|ENST00000330871|SOCS3 REV__ENSG00000184557|ENST00000330871|SOCS3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 326.1947937011719 3 326.194409 975.561398 NaN NaN NaN NaN NaN NaN NaN 174.47 1 169.68 169.18 170.18 -4.7898 0 0 0 0.23508 1 35645 35645 1.1933 0 1 + 39176 18902 26251 26267 38490 38490 0.0726400211985947 RRPQKWEQWKR 11 Unmodified _RRPQKWEQWKR_ 0 0 0 REV__ENST00000430935.5_1_7:138875731-138875803:+|nuORF REV__ENST00000430935.5_1_7:138875731-138875803:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2689819335938 3 533.29893 1596.87496 NaN NaN NaN NaN NaN NaN NaN 123.84 1 119.1 118.6 119.6 -4.731 0 0 0 0.22632 1 23786 23786 0.094841 0 1 + 39177 21613 26252 26268 38491 38491 0.10039920162512317 RRPQKWEQWKR 11 Unmodified _RRPQKWEQWKR_ 0 0 0 REV__ENST00000430935.5_1_7:138875731-138875803:+|nuORF REV__ENST00000430935.5_1_7:138875731-138875803:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2770385742188 3 533.29893 1596.87496 0.25777 0.00013747 -1.1133 -0.00059372 -0.85553 -0.00045625 533.2967676083258 133.6 0.18083 128.78 128.66 128.84 -4.8175 7 4 3 0 0 0 0.66234 1 25717 25717 0.50596 0 1 522790 + 39178 21613 26252 26268 38492 38492 0.10039920162512317 RRPRRDQV 8 Unmodified _RRPRRDQV_ 0 0 0 ENST00000478619.1_1_3:50374315-50374750:-|nuORF ENST00000478619.1_1_3:50374315-50374750:-|nuORF ENST00000478619.1_1_3:50374315-50374750:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.8163757324219 3 361.547846 1081.62171 -0.20897 -7.5552E-05 1.0222 0.00036957 0.81321 0.00029402 361.8810064384163 20.962 0.2079 19.577 19.476 19.684 -1.3847 8 5 2 0 0 0 8448 1 3279 3279 6.2058 2.9245 1 203660 39179 10323 26253 26269 38493 38493 0.08416112502936812 RRPRRDQV 8 Unmodified _RRPRRDQV_ 0 0 0 ENST00000478619.1_1_3:50374315-50374750:-|nuORF ENST00000478619.1_1_3:50374315-50374750:-|nuORF ENST00000478619.1_1_3:50374315-50374750:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 361.547846 1081.62171 -0.27228 -9.8441E-05 1.7876 0.0006463 1.5153 0.00054786 361.5498798120911 19.397 0.17381 19.397 19.276 19.45 0 -0.090152 0.00039808 NaN 6.2058 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 250040 39180 10323 26253 26269 0.08416112502936812 RRPRRPRRWWR 11 Unmodified _RRPRRPRRWWR_ 0 0 0 ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4959716796875 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 162.96 1 162.96 162.46 163.46 0 0 0 0 0.23698 1 32806 32806 0.26902 0.26902 1 39181 9173 26254 26270 38494 38494 0.17108354607285037 RRPRRPRRWWR 11 Unmodified _RRPRRPRRWWR_ 0 0 0 ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4952392578125 2 839.498524 1676.9825 0.68829 0.00057782 1.3745 0.0011539 2.0628 0.0017317 839.4990773284476 169.25 0.17334 164.38 164.27 164.45 -4.873 7 4 2 0 0 0 0.81929 2 33430 33422;33430 1.0715 0.80244 1 9644400 39182 9173 26254 26270 38495;38496 38496 0.17108354607285037 RRPRRPRRWWR 11 Unmodified _RRPRRPRRWWR_ 0 0 0 ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 559.8124389648438 3 560.001442 1676.9825 NaN NaN NaN NaN NaN NaN NaN 15.321 1 13.968 13.468 14.468 -1.3534 0 0 0 0.22632 1 2103 2103 0 0 1 39183 9173 26254 26270 38497 38497 0.17108354607285037 RRPRRPRRWWR 11 Unmodified _RRPRRPRRWWR_ 0 0 0 ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4959106445312 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 169.7 1 164.83 164.33 165.33 -4.873 0 0 0 0.23698 1 33534 33534 0.30703 0 1 39184 9173 26254 26270 38498 38498 0.17108354607285037 RRPRRPRRWWR 11 Unmodified _RRPRRPRRWWR_ 0 0 0 ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.5010986328125 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 178.77 1 173.87 173.37 174.37 -4.9088 0 0 0 0.22632 1 35666 35666 0 0 1 39185 9173 26254 26270 38499 38499 0.17108354607285037 RRPRRRMLARE 11 Unmodified _RRPRRRMLARE_ 0 0 0 REV__ENST00000529014.5_1_11:10880102-10880318:+|nuORF REV__ENST00000529014.5_1_11:10880102-10880318:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2077331542969 4 374.975839 1495.87425 -1.5471 -0.00058012 -2.1017 -0.0007881 -3.6488 -0.0013682 374.9750748652248 20.47 0.24862 18.83 18.705 18.953 -1.6403 10 6 2 0 0 0 0.81973 1 3141 3141 1.0136 0.55906 1 247640 + 39186 22733 26255 26271 38500 38500 0.14614802241840152 RRPRRRPRSWF 11 Unmodified _RRPRRRPRSWF_ 0 0 0 REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4090576171875 2 785.458533 1568.90251 NaN NaN NaN NaN NaN NaN NaN 79.32 1 75.809 75.309 76.309 -3.5102 0 0 0 0.23698 1 15492 15492 0.35063 0 1 + 39187 22454 26256 26272 38501 38501 0.14081868213429516 RRPRRRPRSWF 11 Unmodified _RRPRRRPRSWF_ 0 0 0 REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3912353515625 2 785.458533 1568.90251 NaN NaN NaN NaN NaN NaN NaN 170.47 1 165.6 165.1 166.1 -4.873 0 0 0 0.23698 1 33735 33735 1.1933 0.23107 1 + 39188 22454 26256 26272 38502 38502 0.14081868213429516 RRPSMGHP 8 Unmodified _RRPSMGHP_ 0 0 0 nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant nc|ENSG00000196504|O75400-3|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.1838684082031 3 313.164344 936.471203 NaN NaN NaN NaN NaN NaN NaN 88.263 1 88.263 87.763 88.763 0 0 0 0 0.21486 1 17227 17227 1.4819 0 1 39189 7274 26257 26273 38503 38503 0.00042629519782622083 RRPSMGHP 8 Unmodified _RRPSMGHP_ 0 0 0 nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant nc|ENSG00000196504|O75400-3|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.14068603515625 3 313.164344 936.471203 NaN NaN NaN NaN NaN NaN NaN 88.372 1 88.372 87.872 88.872 0 0 0 0 0.21486 1 17249 17249 1.4819 0 1 39190 7274 26257 26273 38504 38504 0.00042629519782622083 RRPVQVSFY 9 Unmodified _RRPVQVSFY_ 0 0 0 REV__nc|ENSG00000155754|Q53TS8-2|C2CD6 REV__nc|ENSG00000155754|Q53TS8-2|C2CD6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3198852539062 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 132.77 1 127.97 127.47 128.47 -4.799 0 0 0 0.19652 1 25552 25552 1.2148 0.80657 1 + 39191 17223 26258 26274 38505 38505 0.05543942837107352 RRQAAVRTL 9 Unmodified _RRQAAVRTL_ 0 0 0 TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55615234375 3 357.55623 1069.64686 NaN NaN NaN NaN NaN NaN NaN 18.868 1 17.557 17.057 18.057 -1.3109 0 0 0 0.23508 1 3087 3087 5.0475 2.549 1 39192 5821 26259 26275 38506 38506 0.11482167305507573 RRQEQEEKRRR 11 Unmodified _RRQEQEEKRRR_ 0 0 0 ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6962280273438 3 524.292616 1569.85602 0.43978 0.00023057 3.345 0.0017538 3.7848 0.0019843 524.292857580537 154.15 0.17386 148.92 148.83 149.01 -5.2209 6 4 2 0 0 0 0.88957 1 29882 29882 3.0723 1.6171 1 1278000 39193 5208 26260 26276 38507 38507 0.09388338800795282 RRQGSRTLL 9 Unmodified _RRQGSRTLL_ 0 0 0 ENST00000551553.1_1_12:57846273-57850628:+|nuORF;ENSG00000139269|ENST00000266646|INHBE ENST00000551553.1_1_12:57846273-57850628:+|nuORF ENST00000551553.1_1_12:57846273-57850628:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7772216796875 2 543.828163 1085.64177 NaN NaN NaN NaN NaN NaN NaN 155.49 1 150.2 149.7 150.7 -5.2854 0 0 0 0.19657 1 30159 30159 4.897 0 1 39194 4234 26261 26277 38508 38508 0.1023786344292148 RRQHAEALQA 10 Unmodified _RRQHAEALQA_ 0 0 0 ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24 ENSG00000089847|ENST00000318934|ANKRD24 ENSG00000089847|ENST00000318934|ANKRD24 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.26220703125 2 590.320703 1178.62685 NaN NaN NaN NaN NaN NaN NaN 19.057 1 17.422 16.922 17.922 -1.6351 0 0 0 2.8426 1 2854 2854 0.043787 0 1 39195 1771 26262 26278 38509 38509 0.044683715748988106 RRQHVWLRHLY 11 Unmodified _RRQHVWLRHLY_ 0 0 0 ENST00000434140.5_2_3:46717393-46723043:-|nuORF ENST00000434140.5_2_3:46717393-46723043:-|nuORF ENST00000434140.5_2_3:46717393-46723043:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2720336914062 3 521.963771 1562.86948 0.20667 0.00010788 0.091006 4.7502E-05 0.29768 0.00015538 522.2984025423734 141.25 0.44164 141.25 141.06 141.5 0 13 12 2 0 0 0 0.66234 1 28137 28137 0.50596 0 1 4634100 39196 9817 26263 26279 38510 38510 0.11056241370738462 RRQKPPSVR 9 Unmodified _RRQKPPSVR_ 0 0 0 ENST00000577691.5_1_17:18387201-18397610:+|nuORF;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B ENST00000577691.5_1_17:18387201-18397610:+|nuORF ENST00000577691.5_1_17:18387201-18397610:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2181701660156 3 375.231746 1122.67341 NaN NaN NaN NaN NaN NaN NaN 26.433 1 26.433 25.933 26.933 0 0 0 0 0.23508 1 4627 4627 3.8763 0 1 39197 6058 26264 26280 38511 38511 0.11697856196838075 RRQKPYKLVR 10 Unmodified _RRQKPYKLVR_ 0 0 0 REV__ERCC6|p.D989Y|1|0.28|ENSG00000225830|chr10:49471080-49471080|C/A|missense_variant REV__ERCC6|p.D989Y|1|0.28|ENSG00000225830|chr10:49471080-49471080|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 672.4246826171875 2 672.422762 1342.83097 NaN NaN NaN NaN NaN NaN NaN 171.47 1 166.56 166.06 167.06 -4.9149 0 0 0 2.8426 1 33963 33963 0.0013812 0.0013812 1 + 39198 23501 26265 26281 38512 38512 0.17326935736195992 RRQLTRCKR 9 Unmodified _RRQLTRCKR_ 0 0 0 REV__ENST00000416645.6_1_5:36608538-36612883:+|nuORF REV__ENST00000416645.6_1_5:36608538-36612883:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 406.5670166015625 3 406.243769 1215.70948 NaN NaN NaN NaN NaN NaN NaN 90.234 1 86.374 85.874 86.874 -3.8595 0 0 0 0.19623 1 17655 17655 0.073264 0 1 + 39199 21470 26266 26282 38513 38513 0.11024990102009724 RRQNLRQWRKK 11 Unmodified _RRQNLRQWRKK_ 0 0 0 REV__nc|ENSG00000165671|Q96L73-2|NSD1 REV__nc|ENSG00000165671|Q96L73-2|NSD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7003173828125 3 523.650075 1567.92839 NaN NaN NaN NaN NaN NaN NaN 145.09 1 140.15 139.65 140.65 -4.9445 0 0 0 0.23698 1 28042 28042 0.08335 0.010087 1 + 39200 17793 26267 26283 38514 38514 0.16714717665058743 RRQQEREQRRR 11 Unmodified _RRQQEREQRRR_ 0 0 0 ENST00000476609.1_1_2:102441885-102476398:+|nuORF;MAP4K4|p.N722Mfs*3|1|0.46|ENSG00000071054|chr2:101867251-101867251|A/-|frameshift_variant;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;ENSG00000071054|ENST00000324219|MAP4K4 ENST00000476609.1_1_2:102441885-102476398:+|nuORF ENST00000476609.1_1_2:102441885-102476398:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2794799804688 3 533.299993 1596.87815 NaN NaN NaN NaN NaN NaN NaN 59.041 1 55.836 55.336 56.336 -3.2052 0 0 0 0.22632 1 11023 11023 0 0 1 39201 1445 26268 26284 38515 38515 0.10358563269232945 RRQRRQRRWED 11 Unmodified _RRQRRQRRWED_ 0 0 0 ENSG00000123572|ENST00000243300|NRK;NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant;nc|ENSG00000123572|Q7Z2Y5-2|NRK ENSG00000123572|ENST00000243300|NRK ENSG00000123572|ENST00000243300|NRK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7850952148438 3 547.968355 1640.88323 NaN NaN NaN NaN NaN NaN NaN 113.23 1 108.95 108.45 109.45 -4.2725 0 0 0 0.22632 1 21804 21804 0.026206 0.026206 1 39202 3274 26269 26285 38516 38516 0.08842867131852472 RRQRRRRERDR 11 Unmodified _RRQRRRRERDR_ 0 0 0 ENST00000452135.6_3_5:179707603-179719088:-|nuORF ENST00000452135.6_3_5:179707603-179719088:-|nuORF ENST00000452135.6_3_5:179707603-179719088:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.783935546875 3 547.323132 1638.94757 0.33631 0.00018407 -1.3844 -0.00075772 -1.0481 -0.00057364 547.6567668559703 155.25 0.14224 150.47 150.37 150.52 -4.7791 5 3 2 0 0 0 0.96225 1 30856 30856 0.40827 0 1 1668700 39203 9987 26270 26286 38517 38517 0.15365067008656297 RRQRRRRQRRR 11 Unmodified _RRQRRRRQRRR_ 0 0 0 ENST00000394967.2_1_2:175202164-175202371:+|nuORF;SP9|p.K422Rfs*99|1|0.42|ENSG00000217236|chr2:174337346-174337346|A/-|frameshift_variant ENST00000394967.2_1_2:175202164-175202371:+|nuORF ENST00000394967.2_1_2:175202164-175202371:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 560.7210693359375 3 560.686516 1679.03772 NaN NaN NaN NaN NaN NaN NaN 167.15 1 162.25 161.75 162.75 -4.8916 0 0 0 0.22632 1 32831 32831 0.2986 0 1 39204 9421 26271 26287 38518 38518 0.22536161127732157 RRQSPNSA 8 Unmodified _RRQSPNSA_ 0 0 0 REV__nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 REV__nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2343444824219 2 458.24139 914.468226 NaN NaN NaN NaN NaN NaN NaN 29.271 1 27.275 26.775 27.775 -1.9962 0 0 0 0.23664 1 4971 4971 3.2813 0 1 + 39205 24196 26272 26288 38519 38519 0.0075707766661707865 RRQSRRRKKWF 11 Unmodified _RRQSRRRKKWF_ 0 0 0 REV__TRABD2A|p.R420W|1|0.33|ENSG00000186854|chr2:84824029-84824029|G/A|missense_variant REV__TRABD2A|p.R420W|1|0.33|ENSG00000186854|chr2:84824029-84824029|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 802.6300659179688 2 802.479466 1602.94438 NaN NaN NaN NaN NaN NaN NaN 175.15 1 170.36 169.86 170.86 -4.7898 0 0 0 0.22632 1 35811 35811 0 0 1 + 39206 25476 26273 26289 38520 38520 0.16702423901938346 RRQTFNRT 8 Unmodified _RRQTFNRT_ 0 0 0 GRAMD1C|p.R514Q|1|0.43|ENSG00000178075|chr3:113936350-113936350|G/A|missense_variant GRAMD1C|p.R514Q|1|0.43|ENSG00000178075|chr3:113936350-113936350|G/A|missense_variant GRAMD1C|p.R514Q|1|0.43|ENSG00000178075|chr3:113936350-113936350|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20147705078125 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 115.59 1 111.12 110.62 111.62 -4.4726 0 0 0 0.21486 1 22788 22788 1.4819 0 1 39207 11861 26274 26290 38521 38521 0.043487173747280394 RRQVDALGE 9 Unmodified _RRQVDALGE_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-3|CNTRL;nc|ENSG00000119397|Q7Z7A1-4|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2814331054688 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 59.391 1 59.391 58.891 59.891 0 0 0 0 0.23508 1 11378 11378 10.824 0.75 1 39208 3073 26275 26291 38522 38522 0.032381890436681715 RRQWFVLVFRY 11 Unmodified _RRQWFVLVFRY_ 0 0 0 ENST00000472487.5_1_1:59122047-59122251:-|nuORF ENST00000472487.5_1_1:59122047-59122251:-|nuORF ENST00000472487.5_1_1:59122047-59122251:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6862182617188 3 523.964889 1568.87284 -0.45006 -0.00023582 -0.42922 -0.0002249 -0.87929 -0.00046072 524.2989228985572 57.819 0.47542 54.567 54.319 54.794 -3.2517 18 12 2 0 0 0 0.66259 1 10705 10705 0.026206 0 1 509820 39209 10225 26276 26292 38523 38523 0.11115491424720858 RRQWFVLVFRY 11 Unmodified _RRQWFVLVFRY_ 0 0 0 ENST00000472487.5_1_1:59122047-59122251:-|nuORF ENST00000472487.5_1_1:59122047-59122251:-|nuORF ENST00000472487.5_1_1:59122047-59122251:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3912963867188 2 785.443695 1568.87284 NaN NaN NaN NaN NaN NaN NaN 137.92 1 133.08 132.58 133.58 -4.84 0 0 0 0.22632 1 26578 26578 0.094841 0 1 39210 10225 26276 26292 38524 38524 0.11115491424720858 RRQWFVLVFRY 11 Unmodified _RRQWFVLVFRY_ 0 0 0 ENST00000472487.5_1_1:59122047-59122251:-|nuORF ENST00000472487.5_1_1:59122047-59122251:-|nuORF ENST00000472487.5_1_1:59122047-59122251:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3922119140625 2 785.443695 1568.87284 NaN NaN NaN NaN NaN NaN NaN 142.05 1 137.18 136.68 137.68 -4.8678 0 0 0 0.23698 1 27408 27408 2.7352 0.23671 1 39211 10225 26276 26292 38525 38525 0.11115491424720858 RRQWFVLVFRY 11 Unmodified _RRQWFVLVFRY_ 0 0 0 ENST00000472487.5_1_1:59122047-59122251:-|nuORF ENST00000472487.5_1_1:59122047-59122251:-|nuORF ENST00000472487.5_1_1:59122047-59122251:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 523.964889 1568.87284 -0.45006 -0.00023582 -0.42922 -0.0002249 -0.87929 -0.00046072 524.2989228985572 57.819 0.47542 54.567 54.319 54.794 -3.2517 -0.077831 0.00025414 NaN 0.026206 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 509820 39212 10225 26276 26292 0.11115491424720858 RRRAPATK 8 Unmodified _RRRAPATK_ 0 0 0 ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2 ENST00000482957.1_1_20:62065100-62065586:-|nuORF ENST00000482957.1_1_20:62065100-62065586:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.2143249511719 3 319.201787 954.583531 NaN NaN NaN NaN NaN NaN NaN 104.18 1 104.18 103.68 104.68 0 0 0 0 0.21486 1 20475 20475 1.4819 0 1 39213 10408 26277 26293 38526 38526 0.10442226588259018 RRRAPATK 8 Unmodified _RRRAPATK_ 0 0 0 ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2 ENST00000482957.1_1_20:62065100-62065586:-|nuORF ENST00000482957.1_1_20:62065100-62065586:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.2010803222656 3 319.201787 954.583531 NaN NaN NaN NaN NaN NaN NaN 86.426 1 82.699 82.199 83.199 -3.727 0 0 0 0.21486 1 16894 16894 1.4819 0 1 39214 10408 26277 26293 38527 38527 0.10442226588259018 RRRAPATK 8 Unmodified _RRRAPATK_ 0 0 0 ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2 ENST00000482957.1_1_20:62065100-62065586:-|nuORF ENST00000482957.1_1_20:62065100-62065586:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.19451904296875 3 319.201787 954.583531 NaN NaN NaN NaN NaN NaN NaN 94.899 1 90.849 90.349 91.349 -4.0496 0 0 0 0.21486 1 18601 18601 1.4819 0 1 39215 10408 26277 26293 38528 38528 0.10442226588259018 RRRAPATK 8 Unmodified _RRRAPATK_ 0 0 0 ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2 ENST00000482957.1_1_20:62065100-62065586:-|nuORF ENST00000482957.1_1_20:62065100-62065586:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.21063232421875 3 319.201787 954.583531 NaN NaN NaN NaN NaN NaN NaN 86.084 1 82.355 81.855 82.855 -3.7289 0 0 0 0.21486 1 16458 16458 1.4819 0 1 39216 10408 26277 26293 38529 38529 0.10442226588259018 RRRAPATK 8 Unmodified _RRRAPATK_ 0 0 0 ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2 ENST00000482957.1_1_20:62065100-62065586:-|nuORF ENST00000482957.1_1_20:62065100-62065586:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.1909484863281 3 319.201787 954.583531 NaN NaN NaN NaN NaN NaN NaN 86.49 1 82.761 82.261 83.261 -3.7289 0 0 0 0.21486 1 16539 16539 1.4819 0 1 39217 10408 26277 26293 38530 38530 0.10442226588259018 RRRARWHWRHL 11 Unmodified _RRRARWHWRHL_ 0 0 0 ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7796630859375 3 543.978526 1628.91375 NaN NaN NaN NaN NaN NaN NaN 96.057 1 92.176 91.676 92.676 -3.881 0 0 0 0.22632 1 18436 18436 0.50596 0.50539 1 39218 11756 26278 26294 38531 38531 0.12444690307575001 RRRCWRTWRRP 11 Unmodified _RRRCWRTWRRP_ 0 0 0 REV__ENST00000521604.6_1_8:54923030-54934756:-|nuORF REV__ENST00000521604.6_1_8:54923030-54934756:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3577270507812 2 814.950018 1627.88548 NaN NaN NaN NaN NaN NaN NaN 174.57 1 169.78 169.28 170.28 -4.7898 0 0 0 0.22632 1 35668 35668 1.4551 1.2831 1 + 39219 22648 26279 26295 38532 38532 0.09665624335957546 RRRFGLLP 8 Unmodified _RRRFGLLP_ 0 0 0 ENST00000281543.5_1_4:44680449-44680617:+|nuORF ENST00000281543.5_1_4:44680449-44680617:+|nuORF ENST00000281543.5_1_4:44680449-44680617:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 507.8431091308594 2 507.81961 1013.62467 NaN NaN NaN NaN NaN NaN NaN 9.8402 1 9.8402 9.3402 10.34 0 0 0 0 0.21486 1 1182 1182 0 0 1 39220 8442 26280 26296 38533 38533 0.11839987627763549 RRRFHESY 8 Unmodified _RRRFHESY_ 0 0 0 nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7;KAT7|p.V504Lfs*14|1|0.35|ENSG00000136504|chr17:49826024-49826024|A/-|frameshift_variant nc|ENSG00000136504|O95251-4|KAT7 nc|ENSG00000136504|O95251-4|KAT7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3228759765625 2 575.796863 1149.57917 -0.0052905 -3.0462E-06 0.16561 9.5357E-05 0.16032 9.2311E-05 575.7957527020629 134.36 0.14287 129.72 129.63 129.77 -4.6399 5 3 2 0 0 0 0.69887 1 26502 26502 14.582 3.7578 1 1304400 39221 4016 26281 26297 38534 38534 0.010367173747226843 RRRFIAFTL 9 Unmodified _RRRFIAFTL_ 0 0 0 REV__ENSG00000182264|ENST00000332955|IZUMO1 REV__ENSG00000182264|ENST00000332955|IZUMO1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2503662109375 2 590.359099 1178.70365 NaN NaN NaN NaN NaN NaN NaN 138.83 1 133.88 133.38 134.38 -4.952 0 0 0 0.23508 1 26700 26700 7.9102 0.62092 1 + 39222 18772 26282 26298 38535 38535 0.12144214862018998 RRRHQLEPS 9 Unmodified _RRRHQLEPS_ 0 0 0 REV__ENST00000447882.1_1_1:16361675-16363149:-|nuORF REV__ENST00000447882.1_1_1:16361675-16363149:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2591552734375 2 589.828695 1177.64284 NaN NaN NaN NaN NaN NaN NaN 15.094 1 13.883 13.383 14.383 -1.2106 0 0 0 0.23508 1 2054 2054 1.8442 0 1 + 39223 18973 26283 26299 38536 38536 0.06112077811803829 RRRHRQRKRER 11 Unmodified _RRRHRQRKRER_ 0 0 0 ENST00000543442.1_1_12:67660488-67660587:-|nuORF ENST00000543442.1_1_12:67660488-67660587:-|nuORF ENST00000543442.1_1_12:67660488-67660587:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 545.4014282226562 3 545.331739 1632.97339 NaN NaN NaN NaN NaN NaN NaN 165.61 1 160.67 160.17 161.17 -4.9484 0 0 0 0.22632 1 32375 32375 0.094841 0.087559 1 39224 11101 26284 26300 38537 38537 0.18221961250924323 RRRIWKKLNYI 11 Unmodified _RRRIWKKLNYI_ 0 0 0 ENST00000355112.7_1_15:91293288-91298045:+|nuORF ENST00000355112.7_1_15:91293288-91298045:+|nuORF ENST00000355112.7_1_15:91293288-91298045:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 515.5936279296875 3 515.987805 1544.94158 NaN NaN NaN NaN NaN NaN NaN 170.92 1 170.92 170.42 171.42 0 0 0 0 0.22632 1 35176 35176 0.094841 0.087559 1 39225 8950 26285 26301 38538 38538 0.19091155724481723 RRRKAAFG 8 Unmodified _RRRKAAFG_ 0 0 0 REV__ENST00000329214.12_1_17:79633764-79634775:+|nuORF REV__ENST00000329214.12_1_17:79633764-79634775:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2439880371094 2 481.293759 960.572966 NaN NaN NaN NaN NaN NaN NaN 12.92 1 11.79 11.29 12.29 -1.1293 0 0 0 0.2396 1 1629 1629 0 0 1 + 39226 20602 26286 26302 38539 38539 0.09110243933844231 RRRKGGKA 8 Unmodified _RRRKGGKA_ 0 0 0 REV__ENST00000306917.4_1_15:68570201-68570300:+|nuORF REV__ENST00000306917.4_1_15:68570201-68570300:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.201898 927.583865 NaN NaN NaN NaN NaN NaN NaN 13.208 1 12.087 11.587 12.587 -1.1206 0 0 0 0.2396 1 1648 1648 0 0 1 + 39227 20443 26287 26303 38540 38540 0.11717646308136409 RRRKGGKA 8 Unmodified _RRRKGGKA_ 0 0 0 REV__ENST00000306917.4_1_15:68570201-68570300:+|nuORF REV__ENST00000306917.4_1_15:68570201-68570300:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647644042969 3 310.201898 927.583865 NaN NaN NaN NaN NaN NaN NaN 14.082 1 12.871 12.371 13.371 -1.2106 0 0 0 0.2396 1 1838 1838 0 0 1 + 39228 20443 26287 26303 38541 38541 0.11717646308136409 RRRKGGKA 8 Unmodified _RRRKGGKA_ 0 0 0 REV__ENST00000306917.4_1_15:68570201-68570300:+|nuORF REV__ENST00000306917.4_1_15:68570201-68570300:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647644042969 3 310.201898 927.583865 NaN NaN NaN NaN NaN NaN NaN 14.094 1 12.884 12.384 13.384 -1.2106 0 0 0 0.21486 1 1840 1840 0 0 1 + 39229 20443 26287 26303 38542 38542 0.11717646308136409 RRRKGGKA 8 Unmodified _RRRKGGKA_ 0 0 0 REV__ENST00000306917.4_1_15:68570201-68570300:+|nuORF REV__ENST00000306917.4_1_15:68570201-68570300:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.201898 927.583865 NaN NaN NaN NaN NaN NaN NaN 15.164 1 13.953 13.453 14.453 -1.2106 0 0 0 0.2396 1 2069 2069 0 0 1 + 39230 20443 26287 26303 38543 38543 0.11717646308136409 RRRKGGKA 8 Unmodified _RRRKGGKA_ 0 0 0 REV__ENST00000306917.4_1_15:68570201-68570300:+|nuORF REV__ENST00000306917.4_1_15:68570201-68570300:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1694641113281 3 310.201898 927.583865 NaN NaN NaN NaN NaN NaN NaN 15.408 1 14.054 13.554 14.554 -1.3534 0 0 0 0.2396 1 2120 2120 0 0 1 + 39231 20443 26287 26303 38544 38544 0.11717646308136409 RRRKGGKA 8 Unmodified _RRRKGGKA_ 0 0 0 REV__ENST00000306917.4_1_15:68570201-68570300:+|nuORF REV__ENST00000306917.4_1_15:68570201-68570300:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1645202636719 3 310.201898 927.583865 NaN NaN NaN NaN NaN NaN NaN 16.196 1 14.843 14.343 15.343 -1.3534 0 0 0 0.2396 1 2283 2283 0 0 1 + 39232 20443 26287 26303 38545 38545 0.11717646308136409 RRRKGMTG 8 Unmodified _RRRKGMTG_ 0 0 0 REV__ENST00000591724.1_1_17:74077295-74079087:-|nuORF REV__ENST00000591724.1_1_17:74077295-74079087:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2412109375 2 481.277252 960.539951 NaN NaN NaN NaN NaN NaN NaN 14.491 1 13.28 12.78 13.78 -1.2106 0 0 0 0.2396 1 1924 1924 0 0 1 + 39233 23343 26288 26304 38546 38546 0.058102938195020215 RRRKKEKRREQ 11 Unmodified _RRRKKEKRREQ_ 0 0 0 REV__nc|ENSG00000151353|Q96B42-2|TMEM18 REV__nc|ENSG00000151353|Q96B42-2|TMEM18 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3950805664062 2 785.479663 1568.94477 NaN NaN NaN NaN NaN NaN NaN 162.82 1 162.82 162.32 163.32 0 0 0 0 0.22632 1 32763 32763 0 0 1 + 39234 17062 26289 26305 38547 38547 0.18305798831147513 RRRKKIGG 8 Unmodified _RRRKKIGG_ 0 0 0 REV__ENSG00000174243|ENST00000308025|DDX23 REV__ENSG00000174243|ENST00000308025|DDX23 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.2491455078125 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 12.642 1 11.521 11.021 12.021 -1.1206 0 0 0 0.21486 1 1522 1522 0 0 1 + 39235 18404 26290 26306 38548 38548 0.1447850585929018 RRRKKIGG 8 Unmodified _RRRKKIGG_ 0 0 0 REV__ENSG00000174243|ENST00000308025|DDX23 REV__ENSG00000174243|ENST00000308025|DDX23 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.2486267089844 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 13.833 1 12.622 12.122 13.122 -1.2106 0 0 0 0.21486 1 1784 1784 0 0 1 + 39236 18404 26290 26306 38549 38549 0.1447850585929018 RRRKKIGG 8 Unmodified _RRRKKIGG_ 0 0 0 REV__ENSG00000174243|ENST00000308025|DDX23 REV__ENSG00000174243|ENST00000308025|DDX23 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.2283630371094 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 14.108 1 12.897 12.397 13.397 -1.2106 0 0 0 0.21486 1 1843 1843 0 0 1 + 39237 18404 26290 26306 38550 38550 0.1447850585929018 RRRKKKKAKRT 11 Unmodified _RRRKKKKAKRT_ 0 0 0 ENST00000530731.5_1_11:124495676-124501136:+|nuORF;nc|ENSG00000154144|Q3YBR2-2|TBRG1 ENST00000530731.5_1_11:124495676-124501136:+|nuORF ENST00000530731.5_1_11:124495676-124501136:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 728.4967041015625 2 728.494585 1454.97462 NaN NaN NaN NaN NaN NaN NaN 167.94 1 163.05 162.55 163.55 -4.8916 0 0 0 0.22632 1 33079 33079 0.094841 0.094841 1 39238 10960 26291 26307 38551 38551 0.2653278256714202 RRRKKKSRRGR 11 Unmodified _RRRKKKSRRGR_ 0 0 0 REV__ENST00000491285.1_1:146215077-146250826:-|nuORF REV__ENST00000491285.1_1:146215077-146250826:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3765869140625 2 742.485082 1482.95561 NaN NaN NaN NaN NaN NaN NaN 177.58 1 172.79 172.29 173.29 -4.7898 0 0 0 0.23698 1 36321 36321 0.30703 0.30703 1 + 39239 22316 26292 26308 38552 38552 0.2334524599609722 RRRKKKVKKLK 11 Unmodified _RRRKKKVKKLK_ 0 0 0 REV__ENSG00000128908|ENST00000648947|INO80 REV__ENSG00000128908|ENST00000648947|INO80 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.264892578125 3 490.019328 1467.03615 NaN NaN NaN NaN NaN NaN NaN 120.56 1 120.56 120.06 121.06 0 0 0 0 0.22632 1 23763 23763 0 0 1 + 39240 15939 26293 26309 38553 38553 0.32131714266415656 RRRKKKVKKLK 11 Unmodified _RRRKKKVKKLK_ 0 0 0 REV__ENSG00000128908|ENST00000648947|INO80 REV__ENSG00000128908|ENST00000648947|INO80 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2690124511719 3 490.019328 1467.03615 NaN NaN NaN NaN NaN NaN NaN 14.774 1 13.66 13.16 14.16 -1.1142 0 0 0 0.22632 1 2237 2237 0 0 1 + 39241 15939 26293 26309 38554 38554 0.32131714266415656 RRRKKKVKKLK 11 Unmodified _RRRKKKVKKLK_ 0 0 0 REV__ENSG00000128908|ENST00000648947|INO80 REV__ENSG00000128908|ENST00000648947|INO80 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2690124511719 3 490.019328 1467.03615 NaN NaN NaN NaN NaN NaN NaN 14.79 1 13.676 13.176 14.176 -1.1142 0 0 0 0.23698 1 2240 2240 0 0 1 + 39242 15939 26293 26309 38555 38555 0.32131714266415656 RRRLENRFYRR 11 Unmodified _RRRLENRFYRR_ 0 0 0 ENST00000473691.1_1_X:79938122-79975072:-|nuORF;BRWD3|p.F1372Qfs*6|1|0.03|ENSG00000165288|chrX:80684129-80684130|-/AATTG|frameshift_variant;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3 ENST00000473691.1_1_X:79938122-79975072:-|nuORF ENST00000473691.1_1_X:79938122-79975072:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2587280273438 3 541.313462 1620.91856 0.31212 0.00016896 3.8645 0.0020919 4.1767 0.0022609 541.6510308947437 155.81 0.17068 155.81 155.76 155.93 0 6 4 2 0 0 0 0.96227 1 31267 31267 0.08335 0.08335 1 1757200 39243 339 26294 26310 38556 38556 0.13293529659677006 RRRLGHLV 8 Unmodified _RRRLGHLV_ 0 0 0 REV__SGSM1|p.L535Pfs*6|1|0.09|ENSG00000167037|chr22:24879465-24879466|-/C|frameshift_variant REV__SGSM1|p.L535Pfs*6|1|0.09|ENSG00000167037|chr22:24879465-24879466|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.5351867675781 3 336.217548 1005.63082 NaN NaN NaN NaN NaN NaN NaN 68.48 1 68.48 67.98 68.98 0 0 0 0 0.2386 1 13242 13242 0.12286 0 1 + 39244 17897 26295 26311 38557 38557 0.12822505859276134 RRRLHRRRRSP 11 Unmodified _RRRLHRRRRSP_ 0 0 0 ENST00000215832.10_1_22:22221790-22221904:-|nuORF ENST00000215832.10_1_22:22221790-22221904:-|nuORF ENST00000215832.10_1_22:22221790-22221904:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 515.9899291992188 3 515.989313 1544.94611 NaN NaN NaN NaN NaN NaN NaN 177.89 1 172.98 172.48 173.48 -4.9088 0 0 0 0.22632 1 35483 35483 0 0 1 39245 8099 26296 26312 38558 38558 0.19543477710567458 RRRLHRYVHFE 11 Unmodified _RRRLHRYVHFE_ 0 0 0 REV__ENST00000469763.5_1_7:102016742-102065555:+|nuORF REV__ENST00000469763.5_1_7:102016742-102065555:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.697509765625 3 523.627158 1567.85965 0.17596 9.2139E-05 3.0651 0.001605 3.2411 0.0016971 523.9634256134776 118.79 0.17562 118.79 118.68 118.85 0 6 4 2 0 0 0 0.96218 1 23377 23377 1.2148 0.76031 1 3774900 + 39246 15923 26297 26313 38559 38559 0.09843053365352716 RRRLKRRRQLV 11 Unmodified _RRRLKRRRQLV_ 0 0 0 REV__nc|ENSG00000188158|Q6T4R5-4|NHS REV__nc|ENSG00000188158|Q6T4R5-4|NHS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 513.010009765625 3 513.009714 1536.00731 NaN NaN NaN NaN NaN NaN NaN 14.87 1 13.697 13.197 14.197 -1.173 0 0 0 0.22632 1 2044 2044 0 0 1 + 39247 19134 26298 26314 38560 38560 0.2607498969000517 RRRLPCRLL 9 Unmodified _RRRLPCRLL_ 0 0 0 ENSG00000204131|ENST00000633930|NHSL2 ENSG00000204131|ENST00000633930|NHSL2 ENSG00000204131|ENST00000633930|NHSL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 591.883544921875 2 591.871851 1181.72915 NaN NaN NaN NaN NaN NaN NaN 10.286 1 10.286 9.7864 10.786 0 0 0 0 0.23508 1 1275 1275 0 0 1 39248 7562 26299 26315 38561 38561 0.14555366112813317 RRRLQRRRQLL 11 Unmodified _RRRLQRRRQLL_ 0 0 0 ENSG00000215612|ENST00000400677|HMX1 ENSG00000215612|ENST00000400677|HMX1 ENSG00000215612|ENST00000400677|HMX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.20440673828125 5 311.004592 1549.98658 -0.67038 -0.00020849 0.57324 0.00017828 -0.097133 -3.0209E-05 311.00507036267015 8.9432 0.35513 7.8787 7.5944 7.9496 -1.0645 13 9 2 0 0 0 0.82733 1 919 919 0 0 1 93174 39249 7751 26300 26316 38562 38562 0.23358399310359346 RRRLRRKY 8 Unmodified _RRRLRRKY_ 0 0 0 EPHA7|p.Q4Kfs*97|1|0.36|ENSG00000135333|chr6:93419333-93419333|A/-|frameshift_variant EPHA7|p.Q4Kfs*97|1|0.36|ENSG00000135333|chr6:93419333-93419333|A/-|frameshift_variant EPHA7|p.Q4Kfs*97|1|0.36|ENSG00000135333|chr6:93419333-93419333|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2844848632812 2 602.386514 1202.75848 0.39043 0.00023519 0.4473 0.00026945 0.83773 0.00050464 602.3877589700529 135.55 0.20755 135.55 135.47 135.67 0 7 5 2 0 0 0 0.89951 1 26863 26863 0.12286 0 1 2922400 39250 11775 26301 26317 38563 38563 0.16520646453318477 RRRLRRKY 8 Unmodified _RRRLRRKY_ 0 0 0 EPHA7|p.Q4Kfs*97|1|0.36|ENSG00000135333|chr6:93419333-93419333|A/-|frameshift_variant EPHA7|p.Q4Kfs*97|1|0.36|ENSG00000135333|chr6:93419333-93419333|A/-|frameshift_variant EPHA7|p.Q4Kfs*97|1|0.36|ENSG00000135333|chr6:93419333-93419333|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2782592773438 2 602.386514 1202.75848 NaN NaN NaN NaN NaN NaN NaN 89.114 1 85.322 84.822 85.822 -3.7926 0 0 0 0.2396 1 17435 17435 0.12286 0 1 39251 11775 26301 26317 38564 38564 0.16520646453318477 RRRMALENYLA 11 Unmodified _RRRMALENYLA_ 0 0 0 nc|ENSG00000084234|Q06481-5|APLP2;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2 nc|ENSG00000084234|Q06481-5|APLP2 nc|ENSG00000084234|Q06481-5|APLP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2581787109375 3 464.922472 1391.74559 -0.2365 -0.00010995 1.7555 0.00081616 1.519 0.00070621 464.9230052497677 34.595 0.31108 32.278 32.083 32.395 -2.3175 19 8 3 0 0 0 0.78332 1 6352 6352 5.8681 0.46543 1 651820 39252 1666 26302 26318 38565 38565 0.06538402488263273 RRRMHVLRRRW 11 Unmodified _RRRMHVLRRRW_ 0 0 0 HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant;nc|ENSG00000171004|Q96MM7|HS6ST2;ENSG00000171004|ENST00000370833|HS6ST2 HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2711791992188 3 541.323416 1620.94842 NaN NaN NaN NaN NaN NaN NaN 160.3 1 155.5 155 156 -4.7952 0 0 0 0.22632 1 31877 31877 0.50596 0.50539 1 39253 6118 26303 26319 38566 38566 0.16278190124012326 RRRMHVLRRRW 11 Unmodified _RRRMHVLRRRW_ 0 0 0 HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant;nc|ENSG00000171004|Q96MM7|HS6ST2;ENSG00000171004|ENST00000370833|HS6ST2 HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2679443359375 3 541.323416 1620.94842 NaN NaN NaN NaN NaN NaN NaN 165.88 1 161.09 160.59 161.59 -4.7898 0 0 0 0.22632 1 33261 33261 0.094841 0.087559 1 39254 6118 26303 26319 38567 38567 0.16278190124012326 RRRMHVLRRRW 11 Unmodified _RRRMHVLRRRW_ 0 0 0 HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant;nc|ENSG00000171004|Q96MM7|HS6ST2;ENSG00000171004|ENST00000370833|HS6ST2 HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2791137695312 3 541.323416 1620.94842 NaN NaN NaN NaN NaN NaN NaN 173.15 1 168.25 167.75 168.75 -4.8977 0 0 0 0.22632 1 34369 34369 0.094841 0.094841 1 39255 6118 26303 26319 38568 38568 0.16278190124012326 RRRMHVLRRRW 11 Unmodified _RRRMHVLRRRW_ 0 0 0 HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant;nc|ENSG00000171004|Q96MM7|HS6ST2;ENSG00000171004|ENST00000370833|HS6ST2 HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2807006835938 3 541.323416 1620.94842 0.22357 0.00012102 -2.4497 -0.0013261 -2.2262 -0.0012051 541.3232787979082 155.05 0.17947 149.76 149.64 149.82 -5.2854 5 4 2 0 0 0 0.96225 1 30068 30068 0.45452 0.38125 1 1112700 39256 6118 26303 26319 38569 38569 0.16278190124012326 RRRPLHKRRRH 11 Unmodified _RRRPLHKRRRH_ 0 0 0 REV__sp|P16722|UL17_HCMVAUncharacterizedproteinUL17OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL17PE=4SV=1 REV__sp|P16722|UL17_HCMVAUncharacterizedproteinUL17OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL17PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.2855834960938 3 523.329558 1566.96685 NaN NaN NaN NaN NaN NaN NaN 138.04 1 133.12 132.62 133.62 -4.9216 0 0 0 0.22632 1 26542 26542 0.0072825 0.0072825 1 + 39257 24698 26304 26320 38570 38570 0.2060406809023334 RRRPPQPIQQP 11 Unmodified _RRRPPQPIQQP_ 0 0 0 ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;nc|ENSG00000137845|O14672-2|ADAM10;ENST00000482945.5_1_15:58889748-58902828:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2298889160156 3 458.26886 1371.78475 0.24736 0.00011336 -0.23698 -0.0001086 0.01038 4.7568E-06 458.26876737358384 21.102 0.44672 21.102 20.851 21.298 0 22 12 2 0 0 0 0.72919 1 3522 3522 9.7643 3.1408 1 587960 39258 4121 26305 26321 38571 38571 0.11372870834134119 RRRPPQPIQQP 11 Unmodified _RRRPPQPIQQP_ 0 0 0 ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;nc|ENSG00000137845|O14672-2|ADAM10;ENST00000482945.5_1_15:58889748-58902828:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23126220703125 3 458.26886 1371.78475 0.63123 0.00028927 -0.43418 -0.00019897 0.19705 9.0303E-05 458.26869955314777 22.976 0.5919 21.423 21.061 21.653 -1.5532 24 16 2 0 0 0 0.96033 1 3930 3930 9.7643 4.3615 1 618870 39259 4121 26305 26321 38572 38572 0.11372870834134119 RRRPPQPIQQP 11 Unmodified _RRRPPQPIQQP_ 0 0 0 ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;nc|ENSG00000137845|O14672-2|ADAM10;ENST00000482945.5_1_15:58889748-58902828:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2303771972656 3 458.26886 1371.78475 -0.464 -0.00021264 0.63907 0.00029287 0.17507 8.0231E-05 458.2690798689368 23.205 0.74286 21.416 20.92 21.662 -1.7886 40 21 3 0 0 0 0.76929 1 3675 3675 7.0371 2.9205 1 569400 39260 4121 26305 26321 38573 38573 0.11372870834134119 RRRPQLYY 8 Unmodified _RRRPQLYY_ 0 0 0 ENSG00000175175|ENST00000308249|PPM1E ENSG00000175175|ENST00000308249|PPM1E ENSG00000175175|ENST00000308249|PPM1E MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3169555664062 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 123.42 1 118.84 118.34 119.34 -4.5757 0 0 0 0.23711 1 24326 24326 0.62683 0.21856 1 39261 6391 26306 26322 38574 38574 0.06666764931219404 RRRPQLYY 8 Unmodified _RRRPQLYY_ 0 0 0 ENSG00000175175|ENST00000308249|PPM1E ENSG00000175175|ENST00000308249|PPM1E ENSG00000175175|ENST00000308249|PPM1E MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3223876953125 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 141.11 1 136.47 135.97 136.97 -4.6493 0 0 0 0.22834 1 27868 27868 1.7423 0 1 39262 6391 26306 26322 38575 38575 0.06666764931219404 RRRPQLYY 8 Unmodified _RRRPQLYY_ 0 0 0 ENSG00000175175|ENST00000308249|PPM1E ENSG00000175175|ENST00000308249|PPM1E ENSG00000175175|ENST00000308249|PPM1E MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3257446289062 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 141.32 1 136.33 135.83 136.83 -4.9877 0 0 0 0.22834 1 27213 27213 3.5871 2.7421 1 39263 6391 26306 26322 38576 38576 0.06666764931219404 RRRPRPWTRSY 11 Unmodified _RRRPRPWTRSY_ 0 0 0 ENST00000467374.1_1_1:156561716-156561975:+|nuORF ENST00000467374.1_1_1:156561716-156561975:+|nuORF ENST00000467374.1_1_1:156561716-156561975:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 510.7779235839844 3 510.955275 1529.844 NaN NaN NaN NaN NaN NaN NaN 159.82 1 154.59 154.09 155.09 -5.2299 0 0 0 0.22632 1 31024 31024 0.50596 0.47975 1 39264 10147 26307 26323 38577 38577 0.10026766848318402 RRRPRYRKLLR 11 Unmodified _RRRPRYRKLLR_ 0 0 0 BRWD3|p.R1451L|1|0.26|ENSG00000165288|chrX:80682510-80682510|C/A|missense_variant BRWD3|p.R1451L|1|0.26|ENSG00000165288|chrX:80682510-80682510|C/A|missense_variant BRWD3|p.R1451L|1|0.26|ENSG00000165288|chrX:80682510-80682510|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.382080078125 2 785.505484 1568.99641 NaN NaN NaN NaN NaN NaN NaN 166.39 1 166.39 165.89 166.89 0 0 0 0 0.22632 1 33891 33891 0 0 1 39265 340 26308 26324 38578 38578 0.2346758731571299 RRRPRYRKLLR 11 Unmodified _RRRPRYRKLLR_ 0 0 0 BRWD3|p.R1451L|1|0.26|ENSG00000165288|chrX:80682510-80682510|C/A|missense_variant BRWD3|p.R1451L|1|0.26|ENSG00000165288|chrX:80682510-80682510|C/A|missense_variant BRWD3|p.R1451L|1|0.26|ENSG00000165288|chrX:80682510-80682510|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.382080078125 2 785.505484 1568.99641 NaN NaN NaN NaN NaN NaN NaN 166.41 1 166.41 165.91 166.91 0 0 0 0 0.23698 1 33896 33896 0 0 1 39266 340 26308 26324 38579 38579 0.2346758731571299 RRRPRYRKLLR 11 Unmodified _RRRPRYRKLLR_ 0 0 0 BRWD3|p.R1451L|1|0.26|ENSG00000165288|chrX:80682510-80682510|C/A|missense_variant BRWD3|p.R1451L|1|0.26|ENSG00000165288|chrX:80682510-80682510|C/A|missense_variant BRWD3|p.R1451L|1|0.26|ENSG00000165288|chrX:80682510-80682510|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3941650390625 2 785.505484 1568.99641 NaN NaN NaN NaN NaN NaN NaN 115.98 1 111.49 110.99 111.99 -4.486 0 0 0 0.22632 1 22864 22864 0 0 1 39267 340 26308 26324 38580 38580 0.2346758731571299 RRRPVKGQ 8 Unmodified _RRRPVKGQ_ 0 0 0 REV__ENST00000301923.13_2_22:40726871-40727081:+|nuORF REV__ENST00000301923.13_2_22:40726871-40727081:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.83258056640625 3 332.877303 995.61008 NaN NaN NaN NaN NaN NaN NaN 18.465 1 18.465 17.965 18.965 0 0 0 0 0.23899 1 2974 2974 1.3295 1.3262 1 + 39268 20411 26309 26325 38581 38581 0.11209915479616939 RRRQKDRRAEI 11 Unmodified _RRRQKDRRAEI_ 0 0 0 REV__ZNF326|p.E291D|1|0.3|ENSG00000162664|chr1:90013184-90013184|G/T|missense_variant REV__ZNF326|p.E291D|1|0.3|ENSG00000162664|chr1:90013184-90013184|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3889770507812 2 742.437464 1482.86037 NaN NaN NaN NaN NaN NaN NaN 159.14 1 153.86 153.36 154.36 -5.2748 0 0 0 0.23698 1 30886 30886 1.1933 0 1 + 39269 25573 26310 26326 38582 38582 0.13825848014403164 RRRQNLFHWHF 11 Unmodified _RRRQNLFHWHF_ 0 0 0 REV__ENST00000503648.1_1_16:1451355-1464692:-|nuORF REV__ENST00000503648.1_1_16:1451355-1464692:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2666625976562 3 532.951754 1595.83343 0.095249 5.0763E-05 0.52386 0.00027919 0.6191 0.00032995 533.2876840394719 137.92 0.13828 137.92 137.83 137.97 0 5 3 2 0 0 0 0.66234 1 27366 27366 0.026206 0 1 2488400 + 39270 14134 26311 26327 38583 38583 0.05934784193846099 RRRQQQQEQRR 11 Unmodified _RRRQQQQEQRR_ 0 0 0 ENST00000338745.10_3_3:18466531-18466693:-|nuORF;ENST00000450898.1_1_3:18465198-18466693:-|nuORF ENST00000338745.10_3_3:18466531-18466693:-|nuORF ENST00000338745.10_3_3:18466531-18466693:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6925659179688 3 523.624477 1567.8516 NaN NaN NaN NaN NaN NaN NaN 76.564 1 73.149 72.649 73.649 -3.4151 0 0 0 0.22632 1 14944 14944 0.50596 0 1 39271 8833 26312 26328 38584 38584 0.09038874377915818 RRRQRRQRRGR 11 Unmodified _RRRQRRQRRGR_ 0 0 0 REV__ENST00000255977.6_2_7:140178977-140179166:-|nuORF REV__ENST00000255977.6_2_7:140178977-140179166:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 527.6602783203125 3 527.659967 1579.95807 NaN NaN NaN NaN NaN NaN NaN 166.66 1 161.87 161.37 162.37 -4.7898 0 0 0 0.22632 1 33508 33508 1.4551 0 1 + 39272 20132 26313 26329 38585 38585 0.1912909445375135 RRRQWRQWRL 10 Unmodified _RRRQWRQWRL_ 0 0 0 REV__TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant REV__TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 514.2982177734375 3 514.299265 1539.87596 NaN NaN NaN NaN NaN NaN NaN 158.95 1 153.68 153.18 154.18 -5.2712 0 0 0 2.8426 1 30842 30842 0.20733 0 1 + 39273 17978 26314 26330 38586 38586 0.1276217932208965 RRRQWRQWRLT 11 Unmodified _RRRQWRQWRLT_ 0 0 0 REV__TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant REV__TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.786865234375 3 547.981824 1640.92364 NaN NaN NaN NaN NaN NaN NaN 66.163 1 66.163 65.663 66.663 0 0 0 0 0.22632 1 12773 12773 0.094841 0.094841 1 + 39274 17978 26315 26331 38587 38587 0.1288183352228316 RRRREWRRWL 10 Unmodified _RRRREWRRWL_ 0 0 0 REV__ENST00000444165.1_1_1:148853888-148854101:-|nuORF REV__ENST00000444165.1_1_1:148853888-148854101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.682373046875 3 523.974781 1568.90251 NaN NaN NaN NaN NaN NaN NaN 63.269 1 63.269 62.769 63.769 0 0 0 0 0.22588 1 12163 12163 0.15932 0.064481 1 + 39275 21734 26316 26332 38588 38588 0.14081868213429516 RRRREWRRWL 10 Unmodified _RRRREWRRWL_ 0 0 0 REV__ENST00000444165.1_1_1:148853888-148854101:-|nuORF REV__ENST00000444165.1_1_1:148853888-148854101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3892211914062 2 785.458533 1568.90251 NaN NaN NaN NaN NaN NaN NaN 169.55 1 169.55 169.05 170.05 0 0 0 0 2.8426 1 34805 34805 0.043787 0 1 + 39276 21734 26316 26332 38589 38589 0.14081868213429516 RRRRFKMRRMK 11 Unmodified _RRRRFKMRRMK_ 0 0 0 GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant;ENSG00000023171|ENST00000635736|GRAMD1B GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3692626953125 2 810.985546 1619.95654 NaN NaN NaN NaN NaN NaN NaN 141.28 1 136.29 135.79 136.79 -4.9877 0 0 0 0.22632 1 27204 27204 0 0 1 39277 1131 26317 26333 38590 38590 0.17136001049129845 RRRRFKMRRMK 11 Unmodified _RRRRFKMRRMK_ 0 0 0 GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant;ENSG00000023171|ENST00000635736|GRAMD1B GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3692626953125 2 810.985546 1619.95654 NaN NaN NaN NaN NaN NaN NaN 141.29 1 136.3 135.8 136.8 -4.9877 0 0 0 0.23698 1 27205 27205 0 0 1 39278 1131 26317 26333 38591 38591 0.17136001049129845 RRRRFNMRFQY 11 Unmodified _RRRRFNMRFQY_ 0 0 0 REV__nc|ENSG00000155792|Q8TB45-2|DEPTOR REV__nc|ENSG00000155792|Q8TB45-2|DEPTOR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.779541015625 3 543.960032 1628.85827 0.16971 9.2317E-05 1.6128 0.00087731 1.7825 0.00096963 543.9613209126273 84.105 0.14017 80.195 80.108 80.248 -3.9093 5 3 2 0 0 0 0.8247 1 15977 15977 0.094841 0.011491 1 920280 + 39279 17226 26318 26334 38592 38592 0.06899096004940475 RRRRILWQRET 11 Unmodified _RRRRILWQRET_ 0 0 0 REV__IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant REV__IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3905639648438 2 785.463481 1568.91241 NaN NaN NaN NaN NaN NaN NaN 176.98 1 172.08 171.58 172.58 -4.9008 0 0 0 0.22632 1 35292 35292 0 0 1 + 39280 14426 26319 26335 38593 38593 0.15071011428130987 RRRRKHRRMLR 11 Unmodified _RRRRKHRRMLR_ 0 0 0 REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3597412109375 2 811.005659 1619.99677 NaN NaN NaN NaN NaN NaN NaN 156.63 1 151.84 151.34 152.34 -4.7885 0 0 0 0.22632 1 31148 31148 0 0 1 + 39281 13760 26320 26336 38594 38594 0.21156683763911133 RRRRKHRRMLR 11 Unmodified _RRRRKHRRMLR_ 0 0 0 REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27490234375 3 541.006198 1619.99677 0.18642 0.00010085 -3.3912 -0.0018346 -3.2047 -0.0017338 541.3382612315341 131.87 0.14026 127.23 127.17 127.31 -4.6399 5 3 2 0 0 0 0.89136 1 26004 26004 0 0 1 850780 + 39282 13760 26320 26336 38595 38595 0.21156683763911133 RRRRKHRRMLR 11 Unmodified _RRRRKHRRMLR_ 0 0 0 REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2742919921875 3 541.006198 1619.99677 0.2853 0.00015435 3.8713 0.0020944 4.1566 0.0022488 541.3427351211183 146.03 0.17406 141.35 141.26 141.44 -4.6868 7 4 2 0 0 0 0.96227 1 28940 28940 0.08335 0.08335 1 5871700 + 39283 13760 26320 26336 38596 38596 0.21156683763911133 RRRRKHRRMLR 11 Unmodified _RRRRKHRRMLR_ 0 0 0 REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3809814453125 2 811.005659 1619.99677 NaN NaN NaN NaN NaN NaN NaN 152.84 1 147.57 147.07 148.07 -5.2669 0 0 0 0.22632 1 29628 29628 0 0 1 + 39284 13760 26320 26336 38597 38597 0.21156683763911133 RRRRKHRRMLR 11 Unmodified _RRRRKHRRMLR_ 0 0 0 REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2646484375 3 541.006198 1619.99677 0.38688 0.00020931 -0.39714 -0.00021485 -0.010253 -5.5468E-06 541.3404693506301 122.5 0.10928 117.97 117.9 118.01 -4.5305 4 2 2 0 0 0 0.66234 1 23577 23577 0.50596 0.50596 1 724920 + 39285 13760 26320 26336 38598 38598 0.21156683763911133 RRRRKHRRMLR 11 Unmodified _RRRRKHRRMLR_ 0 0 0 REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3677978515625 2 811.005659 1619.99677 NaN NaN NaN NaN NaN NaN NaN 159.96 1 154.71 154.21 155.21 -5.2526 0 0 0 0.22632 1 31041 31041 0 0 1 + 39286 13760 26320 26336 38599 38599 0.21156683763911133 RRRRKHRRMLR 11 Unmodified _RRRRKHRRMLR_ 0 0 0 REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3677978515625 2 811.005659 1619.99677 NaN NaN NaN NaN NaN NaN NaN 159.98 1 154.73 154.23 155.23 -5.2526 0 0 0 0.23698 1 31044 31044 0 0 1 + 39287 13760 26320 26336 38600 38600 0.21156683763911133 RRRRKHRRMLR 11 Unmodified _RRRRKHRRMLR_ 0 0 0 REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3665771484375 2 811.005659 1619.99677 NaN NaN NaN NaN NaN NaN NaN 168.95 1 164.07 163.57 164.57 -4.873 0 0 0 0.22632 1 33345 33345 0.0072825 0 1 + 39288 13760 26320 26336 38601 38601 0.21156683763911133 RRRRKKKKKTE 11 Unmodified _RRRRKKKKKTE_ 0 0 0 REV__ENST00000321870.2_1_8:65492938-65493277:+|nuORF REV__ENST00000321870.2_1_8:65492938-65493277:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 505.29693603515625 3 505.333975 1512.9801 0.20346 0.00010282 -1.0931 -0.00055238 -0.88964 -0.00044957 505.33334020513377 149.92 0.17514 149.92 149.8 149.98 0 6 4 2 0 0 0 0.96225 1 29990 29990 0.40827 0.31342 1 684970 + 39289 20554 26321 26337 38602 38602 0.2441246135892925 RRRRKKQKRRE 11 Unmodified _RRRRKKQKRRE_ 0 0 0 ENST00000325083.12_1_8:17815084-17817658:+|nuORF ENST00000325083.12_1_8:17815084-17817658:+|nuORF ENST00000325083.12_1_8:17815084-17817658:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2635498046875 3 533.008373 1596.00329 NaN NaN NaN NaN NaN NaN NaN 113.54 1 113.54 113.04 114.04 0 0 0 0 0.23698 1 22327 22327 0.064406 0.064406 1 39290 8738 26322 26338 38603 38603 0.22912900196274677 RRRRKKRKPKK 11 Unmodified _RRRRKKRKPKK_ 0 0 0 REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 513.018310546875 3 513.021843 1536.0437 NaN NaN NaN NaN NaN NaN NaN 12.773 1 11.652 11.152 12.152 -1.1206 0 0 0 0.22632 1 1552 1552 0 0 1 + 39291 17473 26323 26339 38604 38604 0.2971186658669467 RRRRKKRKPKK 11 Unmodified _RRRRKKRKPKK_ 0 0 0 REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 513.0191040039062 3 513.021843 1536.0437 NaN NaN NaN NaN NaN NaN NaN 13.521 1 12.311 11.811 12.811 -1.2106 0 0 0 0.22632 1 1717 1717 0 0 1 + 39292 17473 26323 26339 38605 38605 0.2971186658669467 RRRRKRRHIT 10 Unmodified _RRRRKRRHIT_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 359.17010498046875 4 359.482989 1433.90285 0.013958 5.0177E-06 -0.2218 -7.9732E-05 -0.20784 -7.4714E-05 359.48279904830633 82.216 1.2274 82.216 81.442 82.67 0 76 34 3 0 0 0 1.1347 1 15996 15996 0.13989 0.13989 1 3859000 + 39293 23941 26324 26340 38606 38606 0.2032528793331494 RRRRKRRHIT 10 Unmodified _RRRRKRRHIT_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2010498046875 4 359.482989 1433.90285 -0.31254 -0.00011235 0.017044 6.1269E-06 -0.2955 -0.00010623 359.48295253091646 85.74 0.86372 82.076 81.819 82.682 -3.6641 51 23 3 0 0 0 0.76826 1 16852 16852 0 0 1 4148900 + 39294 23941 26324 26340 38607 38607 0.2032528793331494 RRRRKRRHIT 10 Unmodified _RRRRKRRHIT_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 359.482989 1433.90285 -0.31254 -0.00011235 0.017044 6.1269E-06 -0.2955 -0.00010623 359.48295253091646 85.74 0.86372 82.076 81.819 82.682 -3.6641 0.0047254 0.00035879 NaN 0 51 23 3 NaN NaN NaN NaN 0 NaN NaN 0 4148900 + 39295 23941 26324 26340 0.2032528793331494 RRRRKRRRREP 11 Unmodified _RRRRKRRRREP_ 0 0 0 ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2741088867188 3 541.343867 1621.00977 0.27227 0.00014739 -2.7266 -0.001476 -2.4543 -0.0013286 541.3424747556852 143.98 0.41214 139.31 139.02 139.43 -4.6694 14 11 2 0 0 0 0.89134 1 28503 28503 0.094841 0 1 29629000 39296 26618 26325 26341 38608 38608 0.22410838147652612 RRRRKSPG 8 Unmodified _RRRRKSPG_ 0 0 0 nc|ENSG00000130202|Q92692-2|NECTIN2 nc|ENSG00000130202|Q92692-2|NECTIN2 nc|ENSG00000130202|Q92692-2|NECTIN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 338.1748352050781 3 338.212686 1011.61623 NaN NaN NaN NaN NaN NaN NaN 20.065 1 18.43 17.93 18.93 -1.6351 0 0 0 0.2386 1 3067 3067 0.12286 0.12286 1 39297 12318 26326 26342 38609 38609 0.11088433711131529 RRRRKWRERTE 11 Unmodified _RRRRKWRERTE_ 0 0 0 REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7793579101562 3 543.648734 1627.92437 NaN NaN NaN NaN NaN NaN NaN 48.243 1 45.374 44.874 45.874 -2.869 0 0 0 0.23698 1 9123 9123 0.08335 0.010087 1 + 39298 20580 26327 26343 38610 38610 0.13552628171305514 RRRRKWRERTE 11 Unmodified _RRRRKWRERTE_ 0 0 0 REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.777099609375 3 543.648734 1627.92437 NaN NaN NaN NaN NaN NaN NaN 156.65 1 151.36 150.86 151.86 -5.2854 0 0 0 0.22632 1 30392 30392 0.094841 0 1 + 39299 20580 26327 26343 38611 38611 0.13552628171305514 RRRRLLLLRRR 11 Unmodified _RRRRLLLLRRR_ 0 0 0 ENST00000324856.11_1_1:27022599-27022719:+|nuORF ENST00000324856.11_1_1:27022599-27022719:+|nuORF ENST00000324856.11_1_1:27022599-27022719:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2821044921875 3 522.025476 1563.0546 NaN NaN NaN NaN NaN NaN NaN 89.806 1 89.806 89.306 90.306 0 0 0 0 0.23698 1 17542 17542 0 0 1 39300 8732 26328 26344 38612 38612 0.2955926896099754 RRRRLWRWWW 10 Unmodified _RRRRLWRWWW_ 0 0 0 chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2 chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2 chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 553.2264404296875 3 552.979755 1655.91744 0.21402 0.00011835 2.9022 0.0016049 3.1163 0.0017232 552.980685218367 170.95 0.2088 166.04 165.96 166.17 -4.9149 6 5 2 0 0 0 0.53453 1 33849 33849 0 0 1 5690100 39301 535 26329 26345 38613 38613 0.1157136008141606 RRRRMEMKRRR 11 Unmodified _RRRRMEMKRRR_ 0 0 0 REV__nc|ENSG00000164334|A1A519-4|FAM170A REV__nc|ENSG00000164334|A1A519-4|FAM170A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7699584960938 3 544.319566 1629.93687 0.1092 5.9442E-05 -2.4833 -0.0013517 -2.3741 -0.0012922 544.6538415617952 142.24 0.1662 137.21 137.14 137.3 -5.0261 6 4 2 0 0 0 0.96227 1 27408 27408 0.073264 0.073264 1 1067700 + 39302 24136 26330 26346 38614 38614 0.14709625038358354 RRRRPKRRRRK 11 Unmodified _RRRRPKRRRRK_ 0 0 0 ENST00000560168.1_1_19:46269581-46272089:-|nuORF ENST00000560168.1_1_19:46269581-46272089:-|nuORF ENST00000560168.1_1_19:46269581-46272089:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3588256835938 2 811.038348 1620.06214 NaN NaN NaN NaN NaN NaN NaN 162.73 1 157.54 157.04 158.04 -5.1878 0 0 0 0.23698 1 31611 31611 0 0 1 39303 11283 26331 26347 38615 38615 0.2769142128126987 RRRRQRRRPER 11 Unmodified _RRRRQRRRPER_ 0 0 0 ENST00000302787.2_1_4:1857661-1857766:-|nuORF ENST00000302787.2_1_4:1857661-1857766:-|nuORF ENST00000302787.2_1_4:1857661-1857766:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.367919921875 2 811.49397 1620.97339 NaN NaN NaN NaN NaN NaN NaN 167.99 1 163.04 162.54 163.54 -4.948 0 0 0 0.22632 1 33092 33092 0.094841 0 1 39304 8578 26332 26348 38616 38616 0.18773961250940374 RRRRQRRRPER 11 Unmodified _RRRRQRRRPER_ 0 0 0 ENST00000302787.2_1_4:1857661-1857766:-|nuORF ENST00000302787.2_1_4:1857661-1857766:-|nuORF ENST00000302787.2_1_4:1857661-1857766:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3837280273438 2 811.49397 1620.97339 NaN NaN NaN NaN NaN NaN NaN 172.02 1 167.15 166.65 167.65 -4.873 0 0 0 0.23698 1 34114 34114 0 0 1 39305 8578 26332 26348 38617 38617 0.18773961250940374 RRRRQRRRPER 11 Unmodified _RRRRQRRRPER_ 0 0 0 ENST00000302787.2_1_4:1857661-1857766:-|nuORF ENST00000302787.2_1_4:1857661-1857766:-|nuORF ENST00000302787.2_1_4:1857661-1857766:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2762451171875 3 541.331739 1620.97339 0.46999 0.00025442 1.8283 0.00098972 2.2983 0.0012441 541.6677217256487 153.89 0.17645 148.67 148.55 148.73 -5.2209 5 4 2 0 0 0 0.89134 1 29811 29811 0.172 0.172 1 650210 39306 8578 26332 26348 38618 38618 0.18773961250940374 RRRRRAREREQ 11 Unmodified _RRRRRAREREQ_ 0 0 0 REV__SRRM4|p.R478Q|1|0.5|ENSG00000139767|chr12:119154284-119154284|G/A|missense_variant REV__SRRM4|p.R478Q|1|0.5|ENSG00000139767|chr12:119154284-119154284|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3807373046875 2 784.956886 1567.89922 NaN NaN NaN NaN NaN NaN NaN 134.09 1 134.09 133.59 134.59 0 0 0 0 0.22632 1 26540 26540 0 0 1 + 39307 24736 26333 26349 38619 38619 0.13798573368762845 RRRRRFFLLER 11 Unmodified _RRRRRFFLLER_ 0 0 0 REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 802.9902954101562 2 802.989666 1603.96478 NaN NaN NaN NaN NaN NaN NaN 168.18 1 163.39 162.89 163.89 -4.7898 0 0 0 0.23698 1 33981 33981 0 0 1 + 39308 21253 26334 26350 38620 38620 0.18695594561768303 RRRRRKRRKRR 11 Unmodified _RRRRRKRRKRR_ 0 0 0 REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 840.5654296875 2 840.562521 1679.11049 NaN NaN NaN NaN NaN NaN NaN 177.28 1 172.38 171.88 172.88 -4.9008 0 0 0 0.22632 1 35354 35354 0 0 1 + 39309 22278 26335 26351 38621 38621 0.2980991492115663 RRRRRLRWRAS 11 Unmodified _RRRRRLRWRAS_ 0 0 0 MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.692138671875 3 523.657563 1567.95086 NaN NaN NaN NaN NaN NaN NaN 144.57 1 139.9 139.4 140.4 -4.6694 0 0 0 0.23698 1 28631 28631 1.0136 0.93022 1 39310 12154 26336 26352 38622 38622 0.1896036185335106 RRRRRLRWRAS 11 Unmodified _RRRRRLRWRAS_ 0 0 0 MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6787109375 3 523.657563 1567.95086 NaN NaN NaN NaN NaN NaN NaN 144.63 1 139.96 139.46 140.46 -4.6694 0 0 0 0.23594 1 28645 28645 3.5927 3.3273 1 39311 12154 26336 26352 38623 38623 0.1896036185335106 RRRRRLRWRAS 11 Unmodified _RRRRRLRWRAS_ 0 0 0 MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.392333984375 2 784.982707 1567.95086 NaN NaN NaN NaN NaN NaN NaN 168.35 1 163.56 163.06 164.06 -4.7898 0 0 0 0.23698 1 34021 34021 0.26902 0.26902 1 39312 12154 26336 26352 38624 38624 0.1896036185335106 RRRRRLRWRAS 11 Unmodified _RRRRRLRWRAS_ 0 0 0 MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6802368164062 3 523.657563 1567.95086 NaN NaN NaN NaN NaN NaN NaN 148.14 1 143.08 142.58 143.58 -5.0595 0 0 0 0.23698 1 28690 28690 1.0136 0.55906 1 39313 12154 26336 26352 38625 38625 0.1896036185335106 RRRRRLWRWWW 11 Unmodified _RRRRRLWRWWW_ 0 0 0 chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2 chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2 chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 604.4366455078125 3 605.013459 1812.01855 0.57418 0.00034739 3.2705 0.0019787 3.8446 0.0023261 605.3506378497342 164.13 0.13702 159.07 159 159.14 -5.0648 5 3 2 0 0 0 0.96228 1 31998 31998 0 0 1 16856000 39314 535 26337 26353 38626 38626 0.14501811784134588 RRRRRMMMMIQ 11 Unmodified _RRRRRMMMMIQ_ 0 0 0 CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2772827148438 3 522.280843 1563.8207 NaN NaN NaN NaN NaN NaN NaN 145.91 1 140.8 140.3 141.3 -5.1108 0 0 0 0.22632 1 28211 28211 0.094841 0 1 39315 513 26338 26354 38627 38627 0.06134222151808899 RRRRRMMMMIQ 11 Unmodified _RRRRRMMMMIQ_ 0 0 0 CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2772827148438 3 522.280843 1563.8207 NaN NaN NaN NaN NaN NaN NaN 93.784 1 89.94 89.44 90.44 -3.844 0 0 0 0.22632 1 17984 17984 0.026206 0.025642 1 39316 513 26338 26354 38628 38628 0.06134222151808899 RRRRRRCRCRR 11 Unmodified _RRRRRRCRCRR_ 0 0 0 REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.356689453125 2 815.476743 1628.93893 NaN NaN NaN NaN NaN NaN NaN 125.04 1 120.27 119.77 120.77 -4.7681 0 0 0 0.23698 1 24005 24005 1.1933 0 1 + 39317 20677 26339 26355 38629 38629 0.14962098566843451 RRRRRRHKRRS 11 Unmodified _RRRRRRHKRRS_ 0 0 0 REV__ENST00000484699.1_1_1:155239218-155239476:-|nuORF REV__ENST00000484699.1_1_1:155239218-155239476:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2724609375 3 540.675729 1619.00536 0.29029 0.00015695 3.2477 0.001756 3.538 0.0019129 541.0124507071172 137.15 0.16887 137.15 137.07 137.23 0 6 4 2 0 0 0 0.96226 1 27203 27203 0.36667 0.28332 1 2136600 + 39318 18510 26340 26356 38630 38630 0.22061373724727673 RRRRRRHKRRS 11 Unmodified _RRRRRRHKRRS_ 0 0 0 REV__ENST00000484699.1_1_1:155239218-155239476:-|nuORF REV__ENST00000484699.1_1_1:155239218-155239476:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2728881835938 3 540.675729 1619.00536 0.32206 0.00017413 -2.0832 -0.0011263 -1.7612 -0.00095221 541.0084027844521 152.35 0.10365 147.6 147.53 147.64 -4.7523 4 2 2 0 0 0 0.89134 1 30267 30267 0.094841 0 1 880230 + 39319 18510 26340 26356 38631 38631 0.22061373724727673 RRRRRRLLFWD 11 Unmodified _RRRRRRLLFWD_ 0 0 0 REC8|p.P472Qfs*58|1|0.16|ENSG00000100918|chr14:24179686-24179686|C/-|frameshift_variant;nc|ENSG00000100918|O95072-2|REC8;ENSG00000100918|ENST00000611366|REC8 REC8|p.P472Qfs*58|1|0.16|ENSG00000100918|chr14:24179686-24179686|C/-|frameshift_variant REC8|p.P472Qfs*58|1|0.16|ENSG00000100918|chr14:24179686-24179686|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7753295898438 3 543.993953 1628.96003 0.23472 0.00012769 4.099 0.0022298 4.3337 0.0023575 544.3321232319413 94.166 0.13917 90.175 90.107 90.246 -3.9907 5 3 2 0 0 0 0.89135 1 18462 18462 0.026206 0.026206 1 596040 39320 2025 26341 26357 38632 38632 0.17070710419011448 RRRRRRLRSRM 11 Unmodified _RRRRRRLRSRM_ 0 0 0 ENST00000545654.5_1_11:95522396-95522864:-|nuORF ENST00000545654.5_1_11:95522396-95522864:-|nuORF ENST00000545654.5_1_11:95522396-95522864:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2779541015625 3 533.665953 1597.97603 0.24938 0.00013309 -0.64288 -0.00034308 -0.39349 -0.00020999 534.0006377341863 158.73 0.10461 153.94 153.87 153.97 -4.7952 4 2 2 0 0 0 0.89134 1 31560 31560 0.094841 0.094841 1 661010 39321 11122 26342 26358 38633 38633 0.2009609338424525 RRRRRRLRSRM 11 Unmodified _RRRRRRLRSRM_ 0 0 0 ENST00000545654.5_1_11:95522396-95522864:-|nuORF ENST00000545654.5_1_11:95522396-95522864:-|nuORF ENST00000545654.5_1_11:95522396-95522864:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2744140625 3 533.665953 1597.97603 NaN NaN NaN NaN NaN NaN NaN 163.62 1 158.57 158.07 159.07 -5.0446 0 0 0 0.22632 1 31850 31850 0.094841 0 1 39322 11122 26342 26358 38634 38634 0.2009609338424525 RRRRRRPRRRR 11 Unmodified _RRRRRRPRRRR_ 0 0 0 ENST00000453677.1_1_7:104654330-104654752:-|nuORF REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 559.6973876953125 3 559.698756 1676.07444 NaN NaN NaN NaN NaN NaN NaN 171.67 1 171.67 171.17 172.17 0 0 0 0 0.22632 1 35386 35386 0 0 1 39323 10008 26343 26359 38635 38635 0.26344457744289684 RRRRRRRHYHH 11 Unmodified _RRRRRRRHYHH_ 0 0 0 ENST00000337565.9_1_2:111878510-111881339:+|nuORF ENST00000337565.9_1_2:111878510-111881339:+|nuORF ENST00000337565.9_1_2:111878510-111881339:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.38134765625 2 843.486479 1684.95841 NaN NaN NaN NaN NaN NaN NaN 167.53 1 162.64 162.14 163.14 -4.8916 0 0 0 0.23698 1 32959 32959 0 0 1 39324 8817 26344 26360 38636 38636 0.1433251417363408 RRRRRRRLSRL 11 Unmodified _RRRRRRRLSRL_ 0 0 0 ENST00000373930.3_1_9:123476433-123476640:-|nuORF ENST00000373930.3_1_9:123476433-123476640:-|nuORF ENST00000373930.3_1_9:123476433-123476640:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 790.9696044921875 2 791.017081 1580.01961 NaN NaN NaN NaN NaN NaN NaN 164.34 1 164.34 163.84 164.84 0 0 0 0 0.23698 1 33221 33221 0 0 1 39325 9210 26345 26361 38637 38637 0.2528002615306377 RRRRRRRPCPR 11 Unmodified _RRRRRRRPCPR_ 0 0 0 REV__ENST00000267984.3_1_15:81294113-81294617:+|nuORF REV__ENST00000267984.3_1_15:81294113-81294617:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.274169921875 3 522.318665 1563.93417 NaN NaN NaN NaN NaN NaN NaN 126 1 121.23 120.73 121.73 -4.7681 0 0 0 0.22632 1 24184 24184 0.094841 0.094841 1 + 39326 20259 26346 26362 38638 38638 0.17475537695759158 RRRRRRRQARP 11 Unmodified _RRRRRRRQARP_ 0 0 0 REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 782.7097778320312 2 782.49123 1562.96791 NaN NaN NaN NaN NaN NaN NaN 55.225 1 52.087 51.587 52.587 -3.1377 0 0 0 0.23698 1 10247 10247 0 0 1 + 39327 22678 26347 26363 38639 38639 0.20894282459153146 RRRRRRRQARP 11 Unmodified _RRRRRRRQARP_ 0 0 0 REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2640991210938 3 521.996579 1562.96791 0.19703 0.00010285 1.9912 0.0010394 2.1882 0.0011423 521.9978300597076 60.188 0.10514 56.964 56.889 56.994 -3.2237 4 2 2 0 0 0 0.89136 1 11245 11245 0 0 1 919370 + 39328 22678 26347 26363 38640 38640 0.20894282459153146 RRRRRRRRCRC 11 Unmodified _RRRRRRRRCRC_ 0 0 0 REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3815307617188 2 815.476743 1628.93893 NaN NaN NaN NaN NaN NaN NaN 169.45 1 164.66 164.16 165.16 -4.7898 0 0 0 0.23698 1 34327 34327 0 0 1 + 39329 20677 26348 26364 38641 38641 0.1496209856686619 RRRRRRRRCRC 11 Unmodified _RRRRRRRRCRC_ 0 0 0 REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.792724609375 3 543.986921 1628.93893 NaN NaN NaN NaN NaN NaN NaN 164.98 1 159.99 159.49 160.49 -4.9811 0 0 0 0.23698 1 32215 32215 0.08335 0.010087 1 + 39330 20677 26348 26364 38642 38642 0.1496209856686619 RRRRRRRRGL 10 Unmodified _RRRRRRRRGL_ 0 0 0 ENST00000396401.7_1_8:54934824-54934959:-|nuORF;ENST00000522397.5_1_8:54923033-54934959:-|nuORF ENST00000396401.7_1_8:54934824-54934959:-|nuORF ENST00000396401.7_1_8:54934824-54934959:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013854980469 4 360.238522 1436.92498 -0.24024 -8.6543E-05 -0.42643 -0.00015361 -0.66666 -0.00024016 360.4893507349694 100.98 0.30989 96.82 96.634 96.943 -4.1594 13 8 2 0 0 0 0.91149 1 19868 19868 0 0 1 611440 39331 9442 26349 26365 38643 38643 0.22399512401716493 RRRRRRRRLQL 11 Unmodified _RRRRRRRRLQL_ 0 0 0 REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.370361328125 2 811.530356 1621.04616 NaN NaN NaN NaN NaN NaN NaN 152.46 1 147.7 147.2 148.2 -4.7523 0 0 0 0.22632 1 30296 30296 0 0 1 + 39332 21318 26350 26366 38644 38644 0.26047715044387587 RRRRRRRRPP 10 Unmodified _RRRRRRRRPP_ 0 0 0 REV__ENST00000276602.10_1_8:73921164-73926156:+|nuORF REV__ENST00000276602.10_1_8:73921164-73926156:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 731.4650268554688 2 731.469767 1460.92498 NaN NaN NaN NaN NaN NaN NaN 164.34 1 159.27 158.77 159.77 -5.0648 0 0 0 0.22588 1 32038 32038 0.40072 0 1 + 39333 20295 26351 26367 38645 38645 0.21295512401729866 RRRRRRRRRGF 11 Unmodified _RRRRRRRRRGF_ 0 0 0 REV__ENST00000083182.7_1_17:58603276-58603570:-|nuORF REV__ENST00000083182.7_1_17:58603276-58603570:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7822265625 3 543.34409 1627.01044 0.45414 0.00024675 -3.3695 -0.0018308 -2.9153 -0.001584 543.3429128359227 151.84 0.18159 146.67 146.55 146.73 -5.1759 6 4 2 0 0 0 0.96228 1 29428 29428 0 0 1 1454200 + 39334 19975 26352 26368 38646 38646 0.22201677587349877 RRRRRRRRRRQ 11 Unmodified _RRRRRRRRRRQ_ 0 0 0 ENST00000397992.5_1_16:72984846-73092758:-|nuORF;ENST00000405737.2_2_13:41635036-41635183:-|nuORF ENST00000397992.5_1_16:72984846-73092758:-|nuORF;REV__ENST00000405737.2_2_13:41635036-41635183:-|nuORF ENST00000397992.5_1_16:72984846-73092758:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 854.5494995117188 2 854.547403 1707.08025 NaN NaN NaN NaN NaN NaN NaN 167.49 1 167.49 166.99 167.99 0 0 0 0 0.22632 1 34228 34228 0 0 1 39335 9477;9536 26353 26369 38647 38647 0.2549955625597704 RRRRRRRRRTN 11 Unmodified _RRRRRRRRRTN_ 0 0 0 REV__ENST00000444772.3_1_10:21805118-21806168:-|nuORF REV__ENST00000444772.3_1_10:21805118-21806168:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.01025390625 3 547.011 1638.01117 NaN NaN NaN NaN NaN NaN NaN 163.86 1 158.79 158.29 159.29 -5.0648 0 0 0 0.23698 1 31912 31912 0 0 1 + 39336 21741 26354 26370 38648 38648 0.2176847223643108 RRRRRRRRTRA 11 Unmodified _RRRRRRRRTRA_ 0 0 0 ENST00000276602.10_1_8:73921164-73926156:+|nuORF ENST00000276602.10_1_8:73921164-73926156:+|nuORF ENST00000276602.10_1_8:73921164-73926156:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2716674804688 3 532.675729 1595.00536 0.22844 0.00012168 3.3061 0.0017611 3.5346 0.0018828 533.0125863647631 108.35 0.16963 108.35 108.21 108.38 0 5 4 2 0 0 0 0.96228 1 21278 21278 0 0 1 1017500 39337 8428 26355 26371 38649 38649 0.23165373724759775 RRRRRRRRTRP 11 Unmodified _RRRRRRRRTRP_ 0 0 0 ENST00000587097.5_1_17:42276902-42277037:-|nuORF ENST00000587097.5_1_17:42276902-42277037:-|nuORF ENST00000587097.5_1_17:42276902-42277037:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2759399414062 3 541.347612 1621.02101 NaN NaN NaN NaN NaN NaN NaN 160.63 1 155.37 154.87 155.87 -5.2526 0 0 0 0.22632 1 31172 31172 0.094841 0 1 39338 11559 26356 26372 38650 38650 0.23533660241787402 RRRRRRRSRTI 11 Unmodified _RRRRRRRSRTI_ 0 0 0 ENST00000586027.5_1_19:14602515-14606910:-|nuORF ENST00000586027.5_1_19:14602515-14606910:-|nuORF ENST00000586027.5_1_19:14602515-14606910:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6823120117188 3 523.668351 1567.98322 NaN NaN NaN NaN NaN NaN NaN 143.26 1 138.6 138.1 139.1 -4.656 0 0 0 0.22632 1 28331 28331 1.4551 0.047682 1 39339 11542 26357 26373 38651 38651 0.22195149256344848 RRRRRRRTNGW 11 Unmodified _RRRRRRRTNGW_ 0 0 0 nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1 nc|ENSG00000140320|Q8TBE0-3|BAHD1 nc|ENSG00000140320|Q8TBE0-3|BAHD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3988647460938 2 785.462139 1568.90972 NaN NaN NaN NaN NaN NaN NaN 144.1 1 139.15 138.65 139.65 -4.9445 0 0 0 0.22632 1 27823 27823 0 0 1 39340 4289 26358 26374 38652 38652 0.14802600813868594 RRRRRRRVAPW 11 Unmodified _RRRRRRRVAPW_ 0 0 0 ENST00000303961.8_1_19:41306371-41306464:+|nuORF ENST00000303961.8_1_19:41306371-41306464:+|nuORF ENST00000303961.8_1_19:41306371-41306464:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2763671875 3 522.325925 1563.95595 NaN NaN NaN NaN NaN NaN NaN 144.33 1 139.38 138.88 139.88 -4.9445 0 0 0 0.22632 1 27872 27872 0 0 1 39341 8589 26359 26375 38653 38653 0.19652665715966577 RRRRRRRWKIC 11 Unmodified _RRRRRRRWKIC_ 0 0 0 REV__ENST00000303961.8_1_19:41306371-41306464:+|nuORF REV__ENST00000303961.8_1_19:41306371-41306464:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7752685546875 3 548.002565 1640.98587 NaN NaN NaN NaN NaN NaN NaN 108.71 1 108.71 108.21 109.21 0 0 0 0 0.23698 1 21378 21378 0 0 1 + 39342 20422 26360 26376 38654 38654 0.19101281389657743 RRRRRRRWKIC 11 Unmodified _RRRRRRRWKIC_ 0 0 0 REV__ENST00000303961.8_1_19:41306371-41306464:+|nuORF REV__ENST00000303961.8_1_19:41306371-41306464:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7847900390625 3 548.002565 1640.98587 NaN NaN NaN NaN NaN NaN NaN 108.73 1 108.73 108.23 109.23 0 0 0 0 0.22632 1 21382 21382 0 0 1 + 39343 20422 26360 26376 38655 38655 0.19101281389657743 RRRRRRRWQWR 11 Unmodified _RRRRRRRWQWR_ 0 0 0 ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2703247070312 3 590.019495 1767.03666 NaN NaN NaN NaN NaN NaN NaN 69.346 1 65.81 65.31 66.31 -3.5362 0 0 0 0.22632 1 13053 13053 0 0 1 39344 10465 26361 26377 38656 38656 0.18381946758859158 RRRRRRRWQWR 11 Unmodified _RRRRRRRWQWR_ 0 0 0 ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2544555664062 3 590.019495 1767.03666 NaN NaN NaN NaN NaN NaN NaN 69.851 1 66.384 65.884 66.884 -3.467 0 0 0 0.22632 1 13217 13217 0 0 1 39345 10465 26361 26377 38657 38657 0.18381946758859158 RRRRRRSKRKD 11 Unmodified _RRRRRRSKRKD_ 0 0 0 ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant;ADARB2|p.A703Rfs*7|1|0.36|ENSG00000185736|chr10:1183306-1183306|C/-|frameshift_variant;ENSG00000185736|ENST00000381312|ADARB2 ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3963623046875 2 785.490896 1568.96724 NaN NaN NaN NaN NaN NaN NaN 136.98 1 136.98 136.48 137.48 0 0 0 0 0.22632 1 27155 27155 0.026206 0.025642 1 39346 69 26362 26378 38658 38658 0.20551443019417093 RRRRRRSKRKD 11 Unmodified _RRRRRRSKRKD_ 0 0 0 ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant;ADARB2|p.A703Rfs*7|1|0.36|ENSG00000185736|chr10:1183306-1183306|C/-|frameshift_variant;ENSG00000185736|ENST00000381312|ADARB2 ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3846435546875 2 785.490896 1568.96724 NaN NaN NaN NaN NaN NaN NaN 154.07 1 154.07 153.57 154.57 0 0 0 0 0.22632 1 30877 30877 0 0 1 39347 69 26362 26378 38659 38659 0.20551443019417093 RRRRRRWWRR 10 Unmodified _RRRRRRWWRR_ 0 0 0 ENST00000463413.1_3_7:129710461-129710557:+|nuORF ENST00000463413.1_3_7:129710461-129710557:+|nuORF ENST00000463413.1_3_7:129710461-129710557:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7766723632812 3 547.333303 1638.97808 NaN NaN NaN NaN NaN NaN NaN 14.61 1 13.4 12.9 13.9 -1.2106 0 0 0 2.8426 1 1951 1951 0 0 1 39348 10100 26363 26379 38660 38660 0.18414890184385513 RRRRRSLRRRP 11 Unmodified _RRRRRSLRRRP_ 0 0 0 REV__ENST00000263650.11_1_11:3143264-3147722:-|nuORF REV__ENST00000263650.11_1_11:3143264-3147722:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2774658203125 3 522.336713 1563.98831 -0.034448 -1.7994E-05 -3.9167 -0.0020458 -3.9512 -0.0020638 522.3351883257257 161.09 0.1037 156.3 156.25 156.35 -4.7952 4 2 2 0 0 0 0.82733 1 32029 32029 0 0 1 1236500 + 39349 20217 26364 26380 38661 38661 0.22887453118937628 RRRRRSLRRRP 11 Unmodified _RRRRRSLRRRP_ 0 0 0 REV__ENST00000263650.11_1_11:3143264-3147722:-|nuORF REV__ENST00000263650.11_1_11:3143264-3147722:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2711181640625 3 522.336713 1563.98831 -0.034448 -1.7994E-05 -3.9167 -0.0020458 -3.9512 -0.0020638 522.3351883257257 161.09 0.1037 156.3 156.25 156.35 -4.7952 4 2 2 0 0 0 0.89136 1 32034 32034 0.0072825 0.0072825 1 1236500 + 39350 20217 26364 26380 38662 38662 0.22887453118937628 RRRRRSRRSRR 11 Unmodified _RRRRRSRRSRR_ 0 0 0 REV__ENST00000371250.3_1_1:57045132-57045240:-|nuORF REV__ENST00000371250.3_1_1:57045132-57045240:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2745971679688 3 533.335483 1596.98462 0.030282 1.615E-05 -0.31668 -0.0001689 -0.2864 -0.00015275 533.3339257401884 59.333 0.38219 56.423 56.248 56.631 -2.9105 12 10 2 0 0 0 0.89134 1 11413 11413 0.094841 0 1 609420 + 39351 20999 26365 26381 38663 38663 0.21000783345084528 RRRRRTRTQQR 11 Unmodified _RRRRRTRTQQR_ 0 0 0 SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3948364257812 2 785.472703 1568.93085 NaN NaN NaN NaN NaN NaN NaN 169.2 1 164.27 163.77 164.77 -4.9295 0 0 0 0.22632 1 33395 33395 0.50596 0.41111 1 39352 25647 26366 26382 38664 38664 0.16914566122704855 RRRRRWQWRSV 11 Unmodified _RRRRRWQWRSV_ 0 0 0 ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7823486328125 3 547.985569 1640.93488 NaN NaN NaN NaN NaN NaN NaN 116.64 1 112.15 111.65 112.65 -4.486 0 0 0 0.22632 1 22997 22997 0.026206 0.026206 1 39353 10465 26367 26383 38665 38665 0.14004655616440687 RRRRRWQWRSV 11 Unmodified _RRRRRWQWRSV_ 0 0 0 ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7760009765625 3 547.985569 1640.93488 NaN NaN NaN NaN NaN NaN NaN 84.928 1 81.217 80.717 81.717 -3.7117 0 0 0 0.22632 1 16224 16224 0.026206 0.026206 1 39354 10465 26367 26383 38666 38666 0.14004655616440687 RRRRSRRNQKR 11 Unmodified _RRRRSRRNQKR_ 0 0 0 nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1 nc|ENSG00000048649|Q96T23-3|RSF1 nc|ENSG00000048649|Q96T23-3|RSF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6831665039062 3 523.656223 1567.94684 NaN NaN NaN NaN NaN NaN NaN 162.72 1 157.58 157.08 158.08 -5.1438 0 0 0 0.22632 1 31628 31628 2.732 2.0739 1 39355 1230 26368 26384 38667 38667 0.1855827235963261 RRRRSRRRRNT 11 Unmodified _RRRRSRRRRNT_ 0 0 0 REV__FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant REV__FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6787109375 3 523.987972 1568.94209 NaN NaN NaN NaN NaN NaN NaN 160.32 1 155.07 154.57 155.57 -5.2526 0 0 0 0.23698 1 31116 31116 0.073264 0 1 + 39356 15373 26369 26385 38668 38668 0.18037388216862382 RRRRSRSVVRR 11 Unmodified _RRRRSRSVVRR_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3971557617188 2 742.46689 1482.91923 NaN NaN NaN NaN NaN NaN NaN 168.43 1 168.43 167.93 168.93 0 0 0 0 0.22632 1 34493 34493 0 0 1 39357 5189 26370 26386 38669 38669 0.19708369099362244 RRRRVKIRKR 10 Unmodified _RRRRVKIRKR_ 0 0 0 SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 475.32635498046875 3 475.327155 1422.95963 NaN NaN NaN NaN NaN NaN NaN 178.06 1 178.06 177.56 178.56 0 0 0 0 0.22588 1 36894 36894 0 0 1 39358 25790 26371 26387 38670 38670 0.26507335489782236 RRRRVRRRKFR 11 Unmodified _RRRRVRRRKFR_ 0 0 0 REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2 REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7664184570312 3 548.024358 1641.05124 NaN NaN NaN NaN NaN NaN NaN 162.68 1 162.68 162.18 163.18 0 0 0 0 0.23698 1 32727 32727 0 0 1 + 39359 19502 26372 26388 38671 38671 0.25636018906971003 RRRRVRRRKFR 11 Unmodified _RRRRVRRRKFR_ 0 0 0 REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2 REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.788330078125 3 548.024358 1641.05124 NaN NaN NaN NaN NaN NaN NaN 165.42 1 160.63 160.13 161.13 -4.7898 0 0 0 0.23698 1 33129 33129 0 0 1 + 39360 19502 26372 26388 38672 38672 0.25636018906971003 RRRRWLEVLWQ 11 Unmodified _RRRRWLEVLWQ_ 0 0 0 ENST00000502654.5_1_4:76584063-76598547:-|nuORF ENST00000502654.5_1_4:76584063-76598547:-|nuORF ENST00000502654.5_1_4:76584063-76598547:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2677612304688 3 533.311059 1596.91135 NaN NaN NaN NaN NaN NaN NaN 93.175 1 89.032 88.532 89.532 -4.1435 0 0 0 0.22632 1 17759 17759 0.172 0.077159 1 39361 10630 26373 26389 38673 38673 0.1367679705927003 RRRRWRRRRPA 11 Unmodified _RRRRWRRRRPA_ 0 0 0 ENST00000556735.1_1_14:51134724-51134856:-|nuORF ENST00000556735.1_1_14:51134724-51134856:-|nuORF ENST00000556735.1_1_14:51134724-51134856:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3824462890625 2 811.501598 1620.98864 NaN NaN NaN NaN NaN NaN NaN 163.47 1 163.47 162.97 163.97 0 0 0 0 0.22632 1 32954 32954 0 0 1 39362 11245 26374 26390 38674 38674 0.20298872838793613 RRRRWRRRRPA 11 Unmodified _RRRRWRRRRPA_ 0 0 0 ENST00000556735.1_1_14:51134724-51134856:-|nuORF ENST00000556735.1_1_14:51134724-51134856:-|nuORF ENST00000556735.1_1_14:51134724-51134856:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3685302734375 2 811.501598 1620.98864 NaN NaN NaN NaN NaN NaN NaN 170.24 1 165.33 164.83 165.83 -4.9149 0 0 0 0.22632 1 33654 33654 0.0072825 0 1 39363 11245 26374 26390 38675 38675 0.20298872838793613 RRRRWRRRRPA 11 Unmodified _RRRRWRRRRPA_ 0 0 0 ENST00000556735.1_1_14:51134724-51134856:-|nuORF ENST00000556735.1_1_14:51134724-51134856:-|nuORF ENST00000556735.1_1_14:51134724-51134856:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3685302734375 2 811.501598 1620.98864 NaN NaN NaN NaN NaN NaN NaN 170.27 1 165.35 164.85 165.85 -4.9149 0 0 0 0.23698 1 33658 33658 0 0 1 39364 11245 26374 26390 38676 38676 0.20298872838793613 RRRRYNRRERL 11 Unmodified _RRRRYNRRERL_ 0 0 0 REV__ENST00000371361.3_1_10:96112804-96114802:-|nuORF REV__ENST00000371361.3_1_10:96112804-96114802:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7756958007812 3 544.324361 1629.95125 0.29164 0.00015875 -1.8141 -0.00098744 -1.5224 -0.0008287 544.6569983695623 145.42 0.20578 140.75 140.58 140.79 -4.6694 7 5 2 0 0 0 0.89092 1 28818 28818 0.58532 0.55911 1 4136500 + 39365 21001 26375 26391 38677 38677 0.1614773678252277 RRRSFRGFWLT 11 Unmodified _RRRSFRGFWLT_ 0 0 0 ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000140279|Q9NRD8|DUOX2 ENST00000561220.6_1_15:45434150-45457096:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 494.8784484863281 3 494.612738 1480.81638 NaN NaN NaN NaN NaN NaN NaN 137.52 1 137.52 137.02 138.02 0 0 0 0 0.22632 1 27277 27277 0.172 0 1 39366 4122;4285 26376 26392 38678 38678 0.09520863588090833 RRRSMFFFLYF 11 Unmodified _RRRSMFFFLYF_ 0 0 0 ENST00000370114.7_1_1:101360988-101361132:-|nuORF ENST00000370114.7_1_1:101360988-101361132:-|nuORF ENST00000370114.7_1_1:101360988-101361132:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4087524414062 2 785.411006 1568.80746 NaN NaN NaN NaN NaN NaN NaN 20.044 1 20.044 19.544 20.544 0 0 0 0 0.23698 1 3301 3301 0.35063 0.043601 1 39367 9135 26377 26393 38679 38679 0.045807539074075976 RRRSMFFFLYF 11 Unmodified _RRRSMFFFLYF_ 0 0 0 ENST00000370114.7_1_1:101360988-101361132:-|nuORF ENST00000370114.7_1_1:101360988-101361132:-|nuORF ENST00000370114.7_1_1:101360988-101361132:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4112548828125 2 785.411006 1568.80746 NaN NaN NaN NaN NaN NaN NaN 89.109 1 89.109 88.609 89.609 0 0 0 0 0.23698 1 17398 17398 0.35063 0 1 39368 9135 26377 26393 38680 38680 0.045807539074075976 RRRSMFFFLYF 11 Unmodified _RRRSMFFFLYF_ 0 0 0 ENST00000370114.7_1_1:101360988-101361132:-|nuORF ENST00000370114.7_1_1:101360988-101361132:-|nuORF ENST00000370114.7_1_1:101360988-101361132:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4098510742188 2 785.411006 1568.80746 NaN NaN NaN NaN NaN NaN NaN 104.77 1 100.55 100.05 101.05 -4.2183 0 0 0 0.23698 1 20612 20612 0.35063 0 1 39369 9135 26377 26393 38681 38681 0.045807539074075976 RRRSMFFFLYF 11 Unmodified _RRRSMFFFLYF_ 0 0 0 ENST00000370114.7_1_1:101360988-101361132:-|nuORF ENST00000370114.7_1_1:101360988-101361132:-|nuORF ENST00000370114.7_1_1:101360988-101361132:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4113159179688 2 785.411006 1568.80746 NaN NaN NaN NaN NaN NaN NaN 88.604 1 84.609 84.109 85.109 -3.9953 0 0 0 0.23698 1 16880 16880 0.35063 0 1 39370 9135 26377 26393 38682 38682 0.045807539074075976 RRRSSTFTL 9 Unmodified _RRRSSTFTL_ 0 0 0 nc|ENSG00000215421|Q9C0G0-2|ZNF407;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-2|ZNF407 nc|ENSG00000215421|Q9C0G0-2|ZNF407 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2156982421875 3 375.215873 1122.62579 -0.039768 -1.4922E-05 -0.14113 -5.2955E-05 -0.1809 -6.7877E-05 375.2158068821219 39.077 0.48232 39.077 38.856 39.338 0 24 13 2 0 0 0 0.5428 1 7266 7266 4.897 1.0207 1 1112400 39371 7747 26378 26394 38683 38683 0.06938157206013784 RRRSSTFTL 9 Unmodified _RRRSSTFTL_ 0 0 0 nc|ENSG00000215421|Q9C0G0-2|ZNF407;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-2|ZNF407 nc|ENSG00000215421|Q9C0G0-2|ZNF407 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2159118652344 3 375.215873 1122.62579 -0.42005 -0.00015761 0.22762 8.5406E-05 -0.19243 -7.2202E-05 375.2159637234933 41.464 0.54971 38.829 38.502 39.052 -2.6348 22 15 2 0 0 0 0.60489 1 7745 7745 2.4985 2.0902 1 1217500 39372 7747 26378 26394 38684 38684 0.06938157206013784 RRRSSTFTL 9 Unmodified _RRRSSTFTL_ 0 0 0 nc|ENSG00000215421|Q9C0G0-2|ZNF407;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-2|ZNF407 nc|ENSG00000215421|Q9C0G0-2|ZNF407 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2157287597656 3 375.215873 1122.62579 -0.036466 -1.3683E-05 -0.436 -0.00016359 -0.47246 -0.00017728 375.21574064796795 41.253 0.37842 38.714 38.488 38.866 -2.5398 17 10 2 0 0 0 0.60489 1 7379 7379 2.4985 2.0902 1 945110 39373 7747 26378 26394 38685 38685 0.06938157206013784 RRRSSTFTL 9 Unmodified _RRRSSTFTL_ 0 0 0 nc|ENSG00000215421|Q9C0G0-2|ZNF407;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-2|ZNF407 nc|ENSG00000215421|Q9C0G0-2|ZNF407 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2156982421875 3 375.215873 1122.62579 -0.62468 -0.00023439 0.35526 0.0001333 -0.26942 -0.00010109 375.21587156443104 41.199 0.53421 38.709 38.422 38.957 -2.4896 18 14 2 0 0 0 0.60489 1 7401 7401 2.4985 1.2837 1 635720 39374 7747 26378 26394 38686 38686 0.06938157206013784 RRRTRLSRWRW 11 Unmodified _RRRTRLSRWRW_ 0 0 0 REV__ENST00000344697.2_1_3:43122946-43147521:-|nuORF REV__ENST00000344697.2_1_3:43122946-43147521:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.783447265625 3 543.653819 1627.93963 NaN NaN NaN NaN NaN NaN NaN 37.1 1 34.752 34.252 35.252 -2.3479 0 0 0 0.22632 1 6571 6571 0 0 1 + 39375 20743 26379 26395 38687 38687 0.1507753975918149 RRRVPVSK 8 Unmodified _RRRVPVSK_ 0 0 0 REV__nc|ENSG00000163539|O75122|CLASP2 REV__nc|ENSG00000163539|O75122|CLASP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.2173767089844 3 333.217437 996.630481 NaN NaN NaN NaN NaN NaN NaN 72.028 1 72.028 71.528 72.528 0 0 0 0 0.21486 1 13959 13959 1.3295 0.13619 1 + 39376 13441 26380 26396 38688 38688 0.13203086139424158 RRRVPVSK 8 Unmodified _RRRVPVSK_ 0 0 0 REV__nc|ENSG00000163539|O75122|CLASP2 REV__nc|ENSG00000163539|O75122|CLASP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.210205078125 3 333.217437 996.630481 NaN NaN NaN NaN NaN NaN NaN 91.087 1 91.087 90.587 91.587 0 0 0 0 0.21486 1 17798 17798 0.35063 0.14377 1 + 39377 13441 26380 26396 38689 38689 0.13203086139424158 RRRVPVSK 8 Unmodified _RRRVPVSK_ 0 0 0 REV__nc|ENSG00000163539|O75122|CLASP2 REV__nc|ENSG00000163539|O75122|CLASP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.217041015625 3 333.217437 996.630481 NaN NaN NaN NaN NaN NaN NaN 115.19 1 110.72 110.22 111.22 -4.4726 0 0 0 0.21486 1 22704 22704 1.4819 0.51963 1 + 39378 13441 26380 26396 38690 38690 0.13203086139424158 RRRVPVSK 8 Unmodified _RRRVPVSK_ 0 0 0 REV__nc|ENSG00000163539|O75122|CLASP2 REV__nc|ENSG00000163539|O75122|CLASP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.20611572265625 3 333.217437 996.630481 NaN NaN NaN NaN NaN NaN NaN 115.7 1 111.23 110.73 111.73 -4.4726 0 0 0 0.21486 1 22811 22811 1.4819 0.51963 1 + 39379 13441 26380 26396 38691 38691 0.13203086139424158 RRRVPVSK 8 Unmodified _RRRVPVSK_ 0 0 0 REV__nc|ENSG00000163539|O75122|CLASP2 REV__nc|ENSG00000163539|O75122|CLASP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.21685791015625 3 333.217437 996.630481 NaN NaN NaN NaN NaN NaN NaN 119.6 1 114.96 114.46 115.46 -4.645 0 0 0 0.21486 1 22956 22956 1.4819 1.0236 1 + 39380 13441 26380 26396 38692 38692 0.13203086139424158 RRRVRIMPRRG 11 Unmodified _RRRVRIMPRRG_ 0 0 0 PLK3|p.N338Tfs*35|2|0.36|ENSG00000173846|chr1:44803325-44803325|C/-|frameshift_variant PLK3|p.N338Tfs*35|2|0.36|ENSG00000173846|chr1:44803325-44803325|C/-|frameshift_variant PLK3|p.N338Tfs*35|2|0.36|ENSG00000173846|chr1:44803325-44803325|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 485.289794921875 3 484.96875 1451.88442 NaN NaN NaN NaN NaN NaN NaN 111.55 1 111.55 111.05 112.05 0 0 0 0 0.22632 1 21946 21946 1.4551 1.4289 1 39381 12804 26381 26397 38693 38693 0.17655409967073865 RRRWLRAPRRA 11 Unmodified _RRRWLRAPRRA_ 0 0 0 ENST00000470487.5_1_3:167813142-167813508:-|nuORF ENST00000470487.5_1_3:167813142-167813508:-|nuORF ENST00000470487.5_1_3:167813142-167813508:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 498.6443786621094 3 498.643143 1492.9076 NaN NaN NaN NaN NaN NaN NaN 163.26 1 163.26 162.76 163.76 0 0 0 0 0.23698 1 32891 32891 1.3296 0.11481 1 39382 10201 26382 26398 38694 38694 0.18086172076050389 RRRWLRPTRPP 11 Unmodified _RRRWLRPTRPP_ 0 0 0 PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 497.7953186035156 3 497.635765 1489.88547 NaN NaN NaN NaN NaN NaN NaN 33.58 1 31.263 30.763 31.763 -2.3175 0 0 0 0.22632 1 6145 6145 0.026206 0.026206 1 39383 12786 26383 26399 38695 38695 0.16011947607648835 RRRWNQMMKKM 11 Unmodified _RRRWNQMMKKM_ 0 0 0 ENST00000471115.5_1_1:85718343-85724278:-|nuORF ENST00000471115.5_1_1:85718343-85724278:-|nuORF ENST00000471115.5_1_1:85718343-85724278:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2774047851562 3 522.275975 1563.8061 NaN NaN NaN NaN NaN NaN NaN 171.11 1 171.11 170.61 171.61 0 0 0 0 0.22632 1 35229 35229 0.50596 0.41111 1 39384 10208 26384 26400 38696 38696 0.046744732752813434 RRRWNQMMKKM 11 Unmodified _RRRWNQMMKKM_ 0 0 0 ENST00000471115.5_1_1:85718343-85724278:-|nuORF ENST00000471115.5_1_1:85718343-85724278:-|nuORF ENST00000471115.5_1_1:85718343-85724278:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27587890625 3 522.275975 1563.8061 NaN NaN NaN NaN NaN NaN NaN 173.17 1 173.17 172.67 173.67 0 0 0 0 0.22632 1 35796 35796 0.50596 0 1 39385 10208 26384 26400 38697 38697 0.046744732752813434 RRRWRQRRRWP 11 Unmodified _RRRWRQRRRWP_ 0 0 0 REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 570.3316650390625 3 570.336713 1707.98831 NaN NaN NaN NaN NaN NaN NaN 170.69 1 170.69 170.19 171.19 0 0 0 0 0.22632 1 35114 35114 0.50596 0.41111 1 + 39386 21033 26385 26401 38698 38698 0.16263453118949656 RRRWRTRWGRR 11 Unmodified _RRRWRTRWGRR_ 0 0 0 REV__ENST00000431489.5_1_2:62933068-62933182:+|nuORF REV__ENST00000431489.5_1_2:62933068-62933182:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.781494140625 3 547.989313 1640.94611 NaN NaN NaN NaN NaN NaN NaN 159.42 1 154.14 153.64 154.64 -5.2748 0 0 0 0.22632 1 30940 30940 0 0 1 + 39387 21621 26386 26402 38699 38699 0.1512747771055274 RRRWRTRWGRR 11 Unmodified _RRRWRTRWGRR_ 0 0 0 REV__ENST00000431489.5_1_2:62933068-62933182:+|nuORF REV__ENST00000431489.5_1_2:62933068-62933182:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7918090820312 3 547.989313 1640.94611 NaN NaN NaN NaN NaN NaN NaN 163.2 1 158.01 157.51 158.51 -5.1878 0 0 0 0.23698 1 31747 31747 0.40827 0.26837 1 + 39388 21621 26386 26402 38700 38700 0.1512747771055274 RRRWVRLRR 9 Unmodified _RRRWVRLRR_ 0 0 0 ENSG00000135636|ENST00000410020|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-7|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923-3|DYSF;DYSF|p.F1960Lfs*6|1|0.23|ENSG00000135636|chr2:71679165-71679165|T/-|frameshift_variant;nc|ENSG00000135636|O75923-15|DYSF;DYSF|p.F1290Lfs*55|1|0.1|ENSG00000135636|chr2:71601522-71601522|T/-|frameshift_variant ENSG00000135636|ENST00000410020|DYSF ENSG00000135636|ENST00000410020|DYSF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.03961181640625 4 339.219532 1352.84902 -2.1534 -0.00073048 0.45716 0.00015508 -1.6963 -0.00057541 339.2195588307649 16.305 0.82651 14.952 14.781 15.608 -1.3534 49 23 4 0 0 0 0.88469 1 2301 2301 0.23584 0.23584 1 4071800 39389 903 26387 26403 38701 38701 0.18671115501570057 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3267211914062 3 576.325702 1725.95528 0.30072 0.00017331 3.4888 0.0020107 3.7895 0.002184 576.6619756593734 152.87 0.10445 152.87 152.81 152.92 0 4 2 2 0 0 0 0.66313 1 30633 30633 0 0 1 1233800 39390 11615 26388 26404 38702 38702 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3279418945312 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 26.607 1 26.607 26.107 27.107 0 0 0 0 0.22632 1 4664 4664 0 0 1 39391 11615 26388 26404 38703 38703 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3202514648438 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 137.43 1 137.43 136.93 137.93 0 0 0 0 0.22632 1 27256 27256 0.00056442 0.00056442 1 39392 11615 26388 26404 38704 38704 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3275756835938 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 168.02 1 168.02 167.52 168.52 0 0 0 0 0.22632 1 34372 34372 0 0 1 39393 11615 26388 26404 38705 38705 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3129272460938 3 576.325702 1725.95528 0.053158 3.0636E-05 -2.7857 -0.0016055 -2.7326 -0.0015748 576.3252746097676 140.77 0.24426 136.12 135.95 136.19 -4.6493 8 6 2 0 0 0 0.82392 1 27788 27788 0.45452 0.45452 1 2695500 39394 11615 26388 26404 38706 38706 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3253784179688 3 576.325702 1725.95528 0.078324 4.514E-05 4.2511 0.00245 4.3294 0.0024952 576.3290474608256 144.56 0.2424 139.89 139.82 140.06 -4.6694 8 6 2 0 0 0 0.66313 6 28634 28634;28638;28649;28652;28657;28661 0.40827 0.32491 1 16173000 39395 11615 26388 26404 38707;38708;38709;38710;38711;38712 38707 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3269653320312 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 105.81 1 101.54 101.04 102.04 -4.2638 0 0 0 0.22632 1 20827 20827 0 0 1 39396 11615 26388 26404 38713 38713 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3185424804688 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 120.92 1 116.39 115.89 116.89 -4.5221 0 0 0 0.22632 1 23837 23837 0.00056442 0.00056442 1 39397 11615 26388 26404 38714 38714 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.330078125 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 121.12 1 116.57 116.07 117.07 -4.5476 0 0 0 0.22632 1 23877 23877 0.094841 0.094841 1 39398 11615 26388 26404 38715 38715 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.330322265625 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 146.91 1 142.22 141.72 142.72 -4.6868 0 0 0 0.22632 1 29142 29142 0 0 1 39399 11615 26388 26404 38716 38716 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3223876953125 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 118.23 1 113.62 113.12 114.12 -4.6106 0 0 0 0.22632 1 22685 22685 0 0 1 39400 11615 26388 26404 38717 38717 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3255615234375 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 118.44 1 113.83 113.33 114.33 -4.6106 0 0 0 0.22632 1 22726 22726 0.00056442 0.00056442 1 39401 11615 26388 26404 38718 38718 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.326904296875 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 124.67 1 119.91 119.41 120.41 -4.7681 0 0 0 0.22632 1 23943 23943 0 0 1 39402 11615 26388 26404 38719 38719 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3309936523438 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 130.08 1 125.24 124.74 125.74 -4.8355 0 0 0 0.22632 1 24975 24975 0 0 1 39403 11615 26388 26404 38720 38720 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3223266601562 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 142.33 1 137.31 136.81 137.81 -5.0261 0 0 0 0.22632 1 27433 27433 0.0072825 0.0072825 1 39404 11615 26388 26404 38721 38721 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.325439453125 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 153.89 1 148.62 148.12 149.12 -5.2669 0 0 0 0.22632 1 29839 29839 0 0 1 39405 11615 26388 26404 38722 38722 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3272705078125 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 174.88 1 170 169.5 170.5 -4.8845 0 0 0 0.22632 1 34754 34754 0 0 1 39406 11615 26388 26404 38723 38723 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3162841796875 3 576.325702 1725.95528 0.32713 0.00018853 0.85263 0.00049139 1.1798 0.00067993 576.3271313866674 146.38 0.10265 141.38 141.29 141.4 -5 4 2 2 0 0 0 0.8267 1 28318 28318 0.08335 0.08335 1 1589700 39407 11615 26388 26404 38724 38724 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3262939453125 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 43.743 1 40.995 40.495 41.495 -2.7475 0 0 0 0.22632 1 7908 7908 0 0 1 39408 11615 26388 26404 38725 38725 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3252563476562 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 78.31 1 74.652 74.152 75.152 -3.6588 0 0 0 0.22632 1 14917 14917 0.094841 0.094841 1 39409 11615 26388 26404 38726 38726 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3302001953125 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 118.01 1 113.6 113.1 114.1 -4.4088 0 0 0 0.22632 1 22711 22711 0.094841 0.094841 1 39410 11615 26388 26404 38727 38727 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3323364257812 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 120.55 1 116.08 115.58 116.58 -4.467 0 0 0 0.22632 1 23212 23212 0 0 1 39411 11615 26388 26404 38728 38728 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3186645507812 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 120.58 1 116.11 115.61 116.61 -4.467 0 0 0 0.22632 1 23219 23219 0.094841 0 1 39412 11615 26388 26404 38729 38729 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.323486328125 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 131.19 1 126.41 125.91 126.91 -4.7725 0 0 0 0.22632 1 25255 25255 0.026206 0.026206 1 39413 11615 26388 26404 38730 38730 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3236083984375 3 576.325702 1725.95528 NaN NaN NaN NaN NaN NaN NaN 139.48 1 134.63 134.13 135.13 -4.8492 0 0 0 0.22632 1 26888 26888 0.00056442 0.00056442 1 39414 11615 26388 26404 38731 38731 0.121338262762265 RRRWWWLQRRQ 11 Unmodified _RRRWWWLQRRQ_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 576.325702 1725.95528 0.28156 0.00016227 -4.5305 -0.002611 -4.2489 -0.0024488 576.6579522365968 141.32 0.21106 136.46 136.29 136.5 -4.8677 0.16859 -0.00061213 NaN 0.45452 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2506000 39415 11615 26388 26404 0.121338262762265 RRRYHKELVRR 11 Unmodified _RRRYHKELVRR_ 0 0 0 REV__ENSG00000204007|ENST00000371763|GLT6D1 REV__ENSG00000204007|ENST00000371763|GLT6D1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6921997070312 3 523.650075 1567.92839 0.19012 9.9556E-05 1.4291 0.00074837 1.6193 0.00084793 523.6519600076579 147.79 0.20526 147.79 147.71 147.92 0 6 5 2 0 0 0 0.82458 1 29587 29587 0.36667 0.27183 1 1278800 + 39416 19506 26389 26405 38732 38732 0.16714717665036005 RRSFRLPY 8 Unmodified _RRSFRLPY_ 0 0 0 REV__nc|ENSG00000240891|Q0VAA5-2|PLCXD2 REV__nc|ENSG00000240891|Q0VAA5-2|PLCXD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7896728515625 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 113.93 1 113.93 113.43 114.43 0 0 0 0 0.21486 1 22405 22405 4.756 0 1 + 39417 24287 26390 26406 38733 38733 0.07143379902527158 RRSFRLPY 8 Unmodified _RRSFRLPY_ 0 0 0 REV__nc|ENSG00000240891|Q0VAA5-2|PLCXD2 REV__nc|ENSG00000240891|Q0VAA5-2|PLCXD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7671508789062 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 113.96 1 113.96 113.46 114.46 0 0 0 0 0.21486 1 22412 22412 4.756 0.81161 1 + 39418 24287 26390 26406 38734 38734 0.07143379902527158 RRSISYKR 8 Unmodified _RRSISYKR_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|295|2|anti-sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|295|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.261962890625 2 533.317432 1064.62031 NaN NaN NaN NaN NaN NaN NaN 75.934 1 72.518 72.018 73.018 -3.4151 0 0 0 0.21486 1 14815 14815 12.532 1.0368 1 + 39419 23623 26391 26407 38735 38735 0.09058478414158344 RRSPFLQVF 9 Unmodified _RRSPFLQVF_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3197021484375 2 575.330008 1148.64546 0.21659 0.00012461 -0.012998 -7.4783E-06 0.20359 0.00011713 575.3299269389493 134.02 1.0561 129.2 128.77 129.83 -4.8175 74 29 3 0 0 0 0.57447 1 25798 25798 14.838 4.0143 1 8467000 39420 2056 26392 26408 38736 38736 0.07708533216759861 RRSSFLQVF 9 Unmodified _RRSSFLQVF_ 0 0 0 nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2180480957031 3 380.548852 1138.62473 -0.13609 -5.1788E-05 0.14821 5.6403E-05 0.012126 4.6143E-06 380.54885428949535 128.86 0.70288 128.86 128.49 129.2 0 45 19 3 0 0 0 0.35556 2 25419 25419;25467 27.129 27.001 1 5149700 39421 2026 26393 26409 38737;38738 38737 0.06095942837100665 RRSSFLQVF 9 Unmodified _RRSSFLQVF_ 0 0 0 nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2181701660156 3 380.548852 1138.62473 -0.23639 -8.996E-05 0.17365 6.6082E-05 -0.062744 -2.3877E-05 380.5488820311679 132.91 0.70961 128.27 127.88 128.59 -4.6399 48 19 3 0 0 0 0.33094 2 26204 26159;26204 29.841 17.543 1 5207100 39422 2026 26393 26409 38739;38740 38740 0.06095942837100665 RRSSFLQVF 9 Unmodified _RRSSFLQVF_ 0 0 0 nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2170104980469 3 380.548852 1138.62473 0.041737 1.5883E-05 -0.065774 -2.503E-05 -0.024037 -9.1473E-06 380.5487921040169 133.01 0.75508 128.16 127.81 128.57 -4.8527 49 20 3 0 0 0 0.35556 1 25559 25559 17.572 17.543 1 3093900 39423 2026 26393 26409 38741 38741 0.06095942837100665 RRSSFLQVF 9 Unmodified _RRSSFLQVF_ 0 0 0 nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.210205078125 3 380.548852 1138.62473 -0.47813 -0.00018195 0.53656 0.00020419 0.058429 2.2235E-05 380.54904569735686 132.99 0.88586 128.19 127.72 128.61 -4.799 55 24 3 0 0 0 0.25976 5 25594 25553;25594;25599;25641;25644 32.616 32.587 1 3049900 39424 2026 26393 26409 38742;38743;38744;38745;38746 38743 0.06095942837100665 RRSSWGVLL 9 Unmodified _RRSSWGVLL_ 0 0 0 ENST00000495901.1_1_2:234372765-234375735:+|nuORF ENST00000495901.1_1_2:234372765-234375735:+|nuORF ENST00000495901.1_1_2:234372765-234375735:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 359.21234130859375 3 358.545331 1072.61416 0.071058 2.5478E-05 -0.09806 -3.5159E-05 -0.027002 -9.6813E-06 358.545262799351 56.336 1.2661 53.146 52.285 53.551 -3.1895 74 35 3 0 0 0 0.35556 1 10406 10406 12.241 0 1 20174000 39425 10571 26394 26410 38747 38747 0.08075960182668496 RRSVRMYN 8 Unmodified _RRSVRMYN_ 0 0 0 nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000156510|ENST00000354624|HKDC1 nc|ENSG00000156510|Q2TB90-3|HKDC1 nc|ENSG00000156510|Q2TB90-3|HKDC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.275390625 2 541.287817 1080.56108 NaN NaN NaN NaN NaN NaN NaN 160.74 1 155.95 155.45 156.45 -4.7952 0 0 0 0.23664 1 31968 31968 3.2813 0 1 39426 12392 26395 26411 38748 38748 0.024022591283483052 RRSWRPRKQWL 11 Unmodified _RRSWRPRKQWL_ 0 0 0 ENST00000397497.8_2_8:27288464-27288860:+|nuORF ENST00000397497.8_2_8:27288464-27288860:+|nuORF ENST00000397497.8_2_8:27288464-27288860:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4088745117188 2 784.955292 1567.89603 NaN NaN NaN NaN NaN NaN NaN 161.87 1 156.68 156.18 157.18 -5.1878 0 0 0 0.23698 1 31420 31420 1.1933 0.84271 1 39427 9466 26396 26412 38749 38749 0.13479930262087692 RRTAPQPC 8 Unmodified _RRTAPQPC_ 0 0 0 REV__CON__Q2UVX4 REV__CON__Q2UVX4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1645812988281 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 127.57 0.99999 122.87 122.37 123.37 -4.6998 0 0 0 0.21486 1 24540 24540 0.40072 0 1 + + 39428 13541 26397 26413 38750 38750 0.004232097999192774 RRTKRTTK 8 Unmodified _RRTKRTTK_ 0 0 0 ENST00000268989.7_1_17:2275711-2276292:+|nuORF ENST00000268989.7_1_17:2275711-2276292:+|nuORF ENST00000268989.7_1_17:2275711-2276292:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6824951171875 2 523.830706 1045.64686 NaN NaN NaN NaN NaN NaN NaN 130.68 1 125.84 125.34 126.34 -4.8355 0 0 0 0.23664 1 25090 25090 3.2813 3.2375 1 39429 8391 26398 26414 38751 38751 0.125861673054942 RRTRRRRWLEH 11 Unmodified _RRTRRRRWLEH_ 0 0 0 ENST00000507701.1_1_4:76587113-76598433:-|nuORF ENST00000507701.1_1_4:76587113-76598433:-|nuORF ENST00000507701.1_1_4:76587113-76598433:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.274169921875 3 541.317207 1620.92979 NaN NaN NaN NaN NaN NaN NaN 120.39 1 120.39 119.89 120.89 0 0 0 0 0.22632 1 23732 23732 0.094841 0.094841 1 39430 10703 26399 26415 38752 38752 0.14416351753811796 RRTRRRRWLEH 11 Unmodified _RRTRRRRWLEH_ 0 0 0 ENST00000507701.1_1_4:76587113-76598433:-|nuORF ENST00000507701.1_1_4:76587113-76598433:-|nuORF ENST00000507701.1_1_4:76587113-76598433:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.389892578125 2 811.472172 1620.92979 NaN NaN NaN NaN NaN NaN NaN 178 1 173.21 172.71 173.71 -4.7898 0 0 0 0.23698 1 36414 36414 0.26902 0.26902 1 39431 10703 26399 26415 38753 38753 0.14416351753811796 RRTRRRRWLEH 11 Unmodified _RRTRRRRWLEH_ 0 0 0 ENST00000507701.1_1_4:76587113-76598433:-|nuORF ENST00000507701.1_1_4:76587113-76598433:-|nuORF ENST00000507701.1_1_4:76587113-76598433:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2777709960938 3 541.317207 1620.92979 NaN NaN NaN NaN NaN NaN NaN 156.97 1 151.69 151.19 152.19 -5.2854 0 0 0 0.22632 1 30456 30456 0 0 1 39432 10703 26399 26415 38754 38754 0.14416351753811796 RRTRRRRWLEH 11 Unmodified _RRTRRRRWLEH_ 0 0 0 ENST00000507701.1_1_4:76587113-76598433:-|nuORF ENST00000507701.1_1_4:76587113-76598433:-|nuORF ENST00000507701.1_1_4:76587113-76598433:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.275634765625 3 541.317207 1620.92979 NaN NaN NaN NaN NaN NaN NaN 85.202 1 81.49 80.99 81.99 -3.7117 0 0 0 0.22632 1 16276 16276 0 0 1 39433 10703 26399 26415 38755 38755 0.14416351753811796 RRTRRRRWLEH 11 Unmodified _RRTRRRRWLEH_ 0 0 0 ENST00000507701.1_1_4:76587113-76598433:-|nuORF ENST00000507701.1_1_4:76587113-76598433:-|nuORF ENST00000507701.1_1_4:76587113-76598433:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2763061523438 3 541.317207 1620.92979 NaN NaN NaN NaN NaN NaN NaN 148.92 1 143.86 143.36 144.36 -5.0595 0 0 0 0.22632 1 28854 28854 0.094841 0 1 39434 10703 26399 26415 38756 38756 0.14416351753811796 RRTRRRRWLEH 11 Unmodified _RRTRRRRWLEH_ 0 0 0 ENST00000507701.1_1_4:76587113-76598433:-|nuORF ENST00000507701.1_1_4:76587113-76598433:-|nuORF ENST00000507701.1_1_4:76587113-76598433:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3595581054688 2 811.472172 1620.92979 NaN NaN NaN NaN NaN NaN NaN 171.39 1 166.52 166.02 167.02 -4.873 0 0 0 0.23698 1 33963 33963 0.26902 0.26902 1 39435 10703 26399 26415 38757 38757 0.14416351753811796 RRVKVGRVR 9 Unmodified _RRVKVGRVR_ 0 0 0 REV__nc|ENSG00000173599|P11498-2|PC REV__nc|ENSG00000173599|P11498-2|PC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.9192810058594 3 375.919502 1124.73668 NaN NaN NaN NaN NaN NaN NaN 9.9151 1 9.1208 8.6208 9.6208 -0.79424 0 0 0 0.23508 1 1190 1190 0 0 1 + 39436 24177 26400 26416 38758 38758 0.1792984170474483 RRVLINLHCCA 11 Unmodified _RRVLINLHCCA_ 0 0 0 HSPA12B|p.Y609H|1|0.2|ENSG00000132622|chr20:3751930-3751930|T/C|missense_variant HSPA12B|p.Y609H|1|0.2|ENSG00000132622|chr20:3751930-3751930|T/C|missense_variant HSPA12B|p.Y609H|1|0.2|ENSG00000132622|chr20:3751930-3751930|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1298.1884765625 1 1297.69799 1296.69071 0.42582 0.00055258 0.032189 4.1772E-05 0.45801 0.00059435 1298.7038593253228 177.84 0.10368 172.97 172.89 172.99 -4.8686 4 2 2 0 0 0 0.89136 1 35381 35381 0 0 1 11975000 39437 11921 26401 26417 38759 38759 0.05423692416002268 RRVQRPFRRRR 11 Unmodified _RRVQRPFRRRR_ 0 0 0 ENST00000257696.4_1_7:128095970-128097306:+|nuORF ENST00000257696.4_1_7:128095970-128097306:+|nuORF ENST00000257696.4_1_7:128095970-128097306:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 791.9913940429688 2 791.990532 1581.96651 NaN NaN NaN NaN NaN NaN NaN 43.239 1 40.472 39.972 40.972 -2.7661 0 0 0 0.23698 1 7803 7803 0.30703 0 1 39438 8265 26402 26418 38760 38760 0.19880648370349263 RRVRAKGK 8 Unmodified _RRVRAKGK_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.23797607421875 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 77.673 1 74.209 73.709 74.709 -3.4633 0 0 0 0.23626 1 15165 15165 0.063987 0 1 + 39439 19439 26403 26419 38761 38761 0.14478505859278812 RRVRAKGK 8 Unmodified _RRVRAKGK_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.22332763671875 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 78.044 1 74.581 74.081 75.081 -3.4633 0 0 0 0.23881 1 15240 15240 0.063987 0 1 + 39440 19439 26403 26419 38762 38762 0.14478505859278812 RRVVPVLLLL 10 Unmodified _RRVVPVLLLL_ 0 0 0 REV__ENST00000421092.1_1_20:58517212-58517281:+|nuORF REV__ENST00000421092.1_1_20:58517212-58517281:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2776794433594 3 393.276293 1176.80705 NaN NaN NaN NaN NaN NaN NaN 178.17 1 178.17 177.67 178.67 0 0 0 0 0.22588 1 36911 36911 0.13989 0 1 + 39441 21507 26404 26420 38763 38763 0.22571702249865666 RRWCRDYRV 9 Unmodified _RRWCRDYRV_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2271423339844 3 437.228007 1308.66219 NaN NaN NaN NaN NaN NaN NaN 140.43 1 135.56 135.06 136.06 -4.8678 0 0 0 0.19636 1 27077 27077 0.073264 0.041854 1 39442 3845 26405 26421 38764 38764 0.020207108310160038 RRWEHWWRMER 11 Unmodified _RRWEHWWRMER_ 0 0 0 ENST00000398117.1_1_18:60791148-60791340:-|nuORF ENST00000398117.1_1_18:60791148-60791340:-|nuORF ENST00000398117.1_1_18:60791148-60791340:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.6179809570312 3 576.619787 1726.83753 NaN NaN NaN NaN NaN NaN NaN 178.83 1 173.96 173.46 174.46 -4.8686 0 0 0 0.22632 1 35606 35606 0 0 1 39443 9478 26406 26422 38765 38765 0.0031850562527324655 RRWGRRRRRK 10 Unmodified _RRWGRRRRRK_ 0 0 0 REV__nc|ENSG00000109685|O96028-4|NSD2 REV__nc|ENSG00000109685|O96028-4|NSD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3878173828125 2 741.964317 1481.91408 NaN NaN NaN NaN NaN NaN NaN 153.48 1 148.71 148.21 149.21 -4.7684 0 0 0 2.8426 1 30502 30502 0.0013812 0.0008168 1 + 39444 15170 26407 26423 38766 38766 0.19240110027408264 RRWLHERFEIK 11 Unmodified _RRWLHERFEIK_ 0 0 0 ENSG00000155189|ENST00000285518|AGPAT5 ENSG00000155189|ENST00000285518|AGPAT5 ENSG00000155189|ENST00000285518|AGPAT5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4016723632812 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 123.39 1 118.66 118.16 119.16 -4.731 0 0 0 0.22632 1 23704 23704 0.0059557 0.0053913 1 39445 5038 26408 26424 38767 38767 0.10713401931002409 RRWLRWWEQRR 11 Unmodified _RRWLRWWEQRR_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3255615234375 3 576.653708 1726.93929 0.30407 0.00017535 -1.1486 -0.00066232 -0.84448 -0.00048697 576.9876240335544 159.41 0.13986 159.41 159.3 159.44 0 5 3 2 0 0 0 0.89136 1 32012 32012 0 0 1 2902000 + 39446 24768 26409 26425 38768 38768 0.10490120039321482 RRWLRWWEQRR 11 Unmodified _RRWLRWWEQRR_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3312377929688 3 576.653708 1726.93929 NaN NaN NaN NaN NaN NaN NaN 82.533 1 78.925 78.425 79.425 -3.6079 0 0 0 0.22632 1 16130 16130 0 0 1 + 39447 24768 26409 26425 38769 38769 0.10490120039321482 RRWLRWWEQRR 11 Unmodified _RRWLRWWEQRR_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3150634765625 3 576.653708 1726.93929 NaN NaN NaN NaN NaN NaN NaN 82.614 1 79.006 78.506 79.506 -3.6079 0 0 0 0.23698 1 16143 16143 0 0 1 + 39448 24768 26409 26425 38770 38770 0.10490120039321482 RRWLRWWEQRR 11 Unmodified _RRWLRWWEQRR_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3297119140625 3 576.653708 1726.93929 NaN NaN NaN NaN NaN NaN NaN 82.821 1 79.213 78.713 79.713 -3.6079 0 0 0 0.22632 1 16186 16186 0 0 1 + 39449 24768 26409 26425 38771 38771 0.10490120039321482 RRWLRWWEQRR 11 Unmodified _RRWLRWWEQRR_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3297119140625 3 576.653708 1726.93929 NaN NaN NaN NaN NaN NaN NaN 82.848 1 79.24 78.74 79.74 -3.6079 0 0 0 0.23698 1 16190 16190 0 0 1 + 39450 24768 26409 26425 38772 38772 0.10490120039321482 RRWLRWWEQRR 11 Unmodified _RRWLRWWEQRR_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3224487304688 3 576.653708 1726.93929 0.23282 0.00013426 -4.2019 -0.002423 -3.9691 -0.0022888 576.9839851099296 135.92 0.25153 131.09 130.91 131.16 -4.8307 8 6 2 0 0 0 0.89122 1 26167 26167 0.50596 0.50596 1 1410800 + 39451 24768 26409 26425 38773 38773 0.10490120039321482 RRWMPPPPLMR 11 Unmodified _RRWMPPPPLMR_ 0 0 0 REV__nc|ENSG00000205937|Q15287-3|RNPS1 REV__nc|ENSG00000205937|Q15287-3|RNPS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21087646484375 4 359.949601 1435.7693 -2.2821 -0.00082143 -0.55494 -0.00019975 -2.837 -0.0010212 359.9493046436469 15.502 0.17521 14.148 14.097 14.272 -1.3534 8 4 3 0 0 0 0.80759 1 2143 2143 2.6312 1.4164 1 770140 + 39452 19607 26410 26426 38774 38774 0.06884544721060593 RRWPYIYAIDM 11 Unmodified _RRWPYIYAIDM_ 0 0 0 REV__ENSG00000277258|ENST00000620225|PCGF2 REV__ENSG00000277258|ENST00000620225|PCGF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.38134765625 2 742.379371 1482.74419 NaN NaN NaN NaN NaN NaN NaN 130.67 1 125.83 125.33 126.33 -4.8355 0 0 0 0.22632 1 25089 25089 0.172 0.16604 1 + 39453 19940 26411 26427 38775 38775 0.022127683994995095 RRWRGPRRRLG 11 Unmodified _RRWRGPRRRLG_ 0 0 0 REV__ENST00000261721.8_1_15:83735740-83736061:-|nuORF REV__ENST00000261721.8_1_15:83735740-83736061:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.3001708984375 3 489.299376 1464.8763 NaN NaN NaN NaN NaN NaN NaN 165.79 1 160.81 160.31 161.31 -4.9811 0 0 0 0.22632 1 32440 32440 0.172 0 1 + 39454 20191 26412 26428 38776 38776 0.16245599041963033 RRWRKKRRKEA 11 Unmodified _RRWRKKRRKEA_ 0 0 0 nc|ENSG00000290320|P0DW85|H2BN1 nc|ENSG00000290320|P0DW85|H2BN1 nc|ENSG00000290320|P0DW85|H2BN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4051513671875 2 785.487291 1568.96003 NaN NaN NaN NaN NaN NaN NaN 168.7 1 163.83 163.33 164.33 -4.873 0 0 0 0.23698 1 33272 33272 0.26902 0 1 39455 12659 26413 26429 38777 38777 0.19830710418978015 RRWRKRKEAKR 11 Unmodified _RRWRKRKEAKR_ 0 0 0 WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3970947265625 2 785.487291 1568.96003 NaN NaN NaN NaN NaN NaN NaN 125.31 1 125.31 124.81 125.81 0 0 0 0 0.22632 1 24714 24714 0 0 1 39456 6172 26414 26430 38778 38778 0.19830710418978015 RRWRKRKEAKR 11 Unmodified _RRWRKRKEAKR_ 0 0 0 WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3970947265625 2 785.487291 1568.96003 NaN NaN NaN NaN NaN NaN NaN 125.33 1 125.33 124.83 125.83 0 0 0 0 0.23698 1 24717 24717 0.30703 0 1 39457 6172 26414 26430 38779 38779 0.19830710418978015 RRWRPLRLRRE 11 Unmodified _RRWRPLRLRRE_ 0 0 0 ENST00000421814.6_1_5:162932622-162940637:+|nuORF ENST00000421814.6_1_5:162932622-162940637:+|nuORF ENST00000421814.6_1_5:162932622-162940637:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 797.4872436523438 2 797.487291 1592.96003 NaN NaN NaN NaN NaN NaN NaN 178.57 1 173.66 173.16 174.16 -4.9088 0 0 0 0.22632 1 35623 35623 0.094841 0.094841 1 39458 9673 26415 26431 38780 38780 0.18726710418991388 RRWRQWKRGIR 11 Unmodified _RRWRQWKRGIR_ 0 0 0 REV__ENST00000357156.6_1_20:33104228-33114094:+|nuORF REV__ENST00000357156.6_1_20:33104228-33114094:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2772216796875 3 533.318548 1596.93381 NaN NaN NaN NaN NaN NaN NaN 157.28 1 152.01 151.51 152.51 -5.2712 0 0 0 0.22632 1 30508 30508 0 0 1 + 39459 20823 26416 26432 38781 38781 0.15922441247516872 RRWRRRRDRAH 11 Unmodified _RRWRRRRDRAH_ 0 0 0 ENST00000425427.6_1_5:153570544-153674427:+|nuORF ENST00000425427.6_1_5:153570544-153674427:+|nuORF ENST00000425427.6_1_5:153570544-153674427:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2652587890625 3 540.980818 1619.92062 NaN NaN NaN NaN NaN NaN NaN 49.795 1 46.796 46.296 47.296 -2.999 0 0 0 0.22632 1 9109 9109 0.094841 0 1 39460 9717 26417 26433 38782 38782 0.13546003188139366 RRWRRRRDRAH 11 Unmodified _RRWRRRRDRAH_ 0 0 0 ENST00000425427.6_1_5:153570544-153674427:+|nuORF ENST00000425427.6_1_5:153570544-153674427:+|nuORF ENST00000425427.6_1_5:153570544-153674427:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2713012695312 3 540.980818 1619.92062 NaN NaN NaN NaN NaN NaN NaN 49.675 1 46.669 46.169 47.169 -3.0068 0 0 0 0.22632 1 9114 9114 0.094841 0 1 39461 9717 26417 26433 38783 38783 0.13546003188139366 RRWSYRRRSRY 11 Unmodified _RRWSYRRRSRY_ 0 0 0 REV__ENST00000491215.1_1_6:32163881-32163974:-|nuORF REV__ENST00000491215.1_1_6:32163881-32163974:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7797241210938 3 547.969696 1640.88726 NaN NaN NaN NaN NaN NaN NaN 68.949 1 68.949 68.449 69.449 0 0 0 0 0.22632 1 13339 13339 0.026206 0.026206 1 + 39462 22311 26418 26434 38784 38784 0.09244956625593659 RRWWLWLQRRS 11 Unmodified _RRWWLWLQRRS_ 0 0 0 REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7864990234375 3 548.31117 1641.91168 0.28217 0.00015472 2.9247 0.0016037 3.2069 0.0017584 548.3132213357394 148.45 0.1431 143.74 143.68 143.83 -4.7095 5 3 2 0 0 0 0.96225 1 29466 29466 0.40827 0.31342 1 3216500 + 39463 23739 26419 26435 38785 38785 0.1164021677909659 RRWWRRRLWQL 11 Unmodified _RRWWRRRLWQL_ 0 0 0 ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.2419738769531 5 343.203429 1710.98076 -0.28025 -9.6183E-05 0.43728 0.00015007 0.15702 5.3891E-05 343.2035013515202 45.267 0.6108 42.477 42.13 42.741 -2.79 37 16 3 0 0 0 0.96228 1 8462 8462 0 0 1 1335600 39464 8455 26420 26436 38786 38786 0.15371300798688026 RRWWRRRLWQL 11 Unmodified _RRWWRRRLWQL_ 0 0 0 ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 5 343.203429 1710.98076 -0.13585 -4.6624E-05 0.33075 0.00011351 0.1949 6.6891E-05 343.20347500235584 42.345 0.52129 42.345 42.048 42.569 0 -0.10745 0.0001374 NaN 0 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1576700 39465 8455 26420 26436 0.15371300798688026 RRWWRRRLWQL 11 Unmodified _RRWWRRRLWQL_ 0 0 0 ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 5 343.203429 1710.98076 -0.018454 -6.3335E-06 0.046538 1.5972E-05 0.028084 9.6386E-06 343.2034401890135 45.4 0.6306 42.534 42.199 42.83 -2.8653 0.08216 -0.00035032 NaN 0 45 17 4 NaN NaN NaN NaN 0 NaN NaN 0 2136900 39466 8455 26420 26436 0.15371300798688026 RRWWSRLLRLW 11 Unmodified _RRWWSRLLRLW_ 0 0 0 REV__ENST00000216479.7_1_14:77924477-77924549:+|nuORF REV__ENST00000216479.7_1_14:77924477-77924549:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.776123046875 3 543.319666 1626.93717 0.39579 0.00021504 0.376 0.00020429 0.77178 0.00041933 543.6556925782696 145.36 0.1743 140.41 140.31 140.48 -4.9445 6 4 2 0 0 0 0.89122 1 28100 28100 0.50596 0.41111 1 1409700 + 39467 20018 26421 26437 38787 38787 0.14877691301535378 RRWYNRQK 8 Unmodified _RRWYNRQK_ 0 0 0 ENST00000471520.5_1_10:101507139-101514325:+|nuORF ENST00000471520.5_1_10:101507139-101514325:+|nuORF ENST00000471520.5_1_10:101507139-101514325:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 403.3053283691406 3 402.891612 1205.65301 NaN NaN NaN NaN NaN NaN NaN 9.117 1 9.117 8.617 9.617 0 0 0 0 0.2396 1 1021 1021 0.30703 0.30703 1 39468 10212 26422 26438 38788 38788 0.05840685537009449 RRYEVARVL 9 Unmodified _RRYEVARVL_ 0 0 0 ENSG00000180806|ENST00000303450|HOXC9 ENSG00000180806|ENST00000303450|HOXC9 ENSG00000180806|ENST00000303450|HOXC9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71240234375 3 387.899885 1160.67783 -0.41377 -0.0001605 0.42662 0.00016549 0.012854 4.986E-06 387.9000409621181 52.757 0.65853 49.874 49.625 50.283 -2.8837 39 18 3 0 0 0 0.27464 1 10040 10040 22.736 20.238 1 2298600 39469 6694 26423 26439 38789 38789 0.10391320619737598 RRYEVARVL 9 Unmodified _RRYEVARVL_ 0 0 0 ENSG00000180806|ENST00000303450|HOXC9 ENSG00000180806|ENST00000303450|HOXC9 ENSG00000180806|ENST00000303450|HOXC9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7174987792969 3 387.899885 1160.67783 0.045116 1.75E-05 0.021508 8.3429E-06 0.066623 2.5843E-05 387.89987945476304 52.966 0.69715 49.879 49.551 50.248 -3.0876 43 19 3 0 0 0 0.66076 1 9772 9772 27.088 20.458 1 2558700 39470 6694 26423 26439 38790 38790 0.10391320619737598 RRYEVARVL 9 Unmodified _RRYEVARVL_ 0 0 0 ENSG00000180806|ENST00000303450|HOXC9 ENSG00000180806|ENST00000303450|HOXC9 ENSG00000180806|ENST00000303450|HOXC9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 387.899885 1160.67783 0.1268 4.9186E-05 0.072563 2.8147E-05 0.19936 7.7333E-05 387.8998747165368 49.677 0.86036 49.677 49.404 50.265 0 -0.14642 -0.00029665 NaN 12.241 54 24 4 NaN NaN NaN NaN 0 NaN NaN 0 4577700 39471 6694 26423 26439 0.10391320619737598 RRYEVARVL 9 Unmodified _RRYEVARVL_ 0 0 0 ENSG00000180806|ENST00000303450|HOXC9 ENSG00000180806|ENST00000303450|HOXC9 ENSG00000180806|ENST00000303450|HOXC9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 387.899885 1160.67783 -0.68769 -0.00026675 0.72879 0.0002827 0.041101 1.5943E-05 387.90014788601667 52.959 0.75531 49.863 49.484 50.239 -3.0954 0.04032 0.000467 NaN 12.241 49 21 3 NaN NaN NaN NaN 0 NaN NaN 0 2254400 39472 6694 26423 26439 0.10391320619737598 RRYFHWRRSYA 11 Unmodified _RRYFHWRRSYA_ 0 0 0 nc|ENSG00000196371|P22083-2|FUT4;ENSG00000196371|ENST00000358752|FUT4 nc|ENSG00000196371|P22083-2|FUT4 nc|ENSG00000196371|P22083-2|FUT4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27978515625 3 533.279759 1596.81745 NaN NaN NaN NaN NaN NaN NaN 4.7271 1 4.7271 4.2271 5.2271 0 0 0 0 0.22632 1 143 143 0 0 1 39473 7262 26424 26440 38791 38791 0.042910779569865554 RRYIIYNSRPM 11 Unmodified _RRYIIYNSRPM_ 0 0 0 nc|ENSG00000157693|Q5VZI3-2|TMEM268;ENSG00000157693|ENST00000288502|TMEM268;nc|ENSG00000157693|Q5VZI3-3|TMEM268 nc|ENSG00000157693|Q5VZI3-2|TMEM268 nc|ENSG00000157693|Q5VZI3-2|TMEM268 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2680358886719 3 490.266239 1467.77689 NaN NaN NaN NaN NaN NaN NaN 106.5 1 106.5 106 107 0 0 0 0 0.22632 1 20937 20937 0.026206 0.025642 1 39474 5136 26425 26441 38792 38792 0.06170975522331901 RRYIIYNSRPM 11 Unmodified _RRYIIYNSRPM_ 0 0 0 nc|ENSG00000157693|Q5VZI3-2|TMEM268;ENSG00000157693|ENST00000288502|TMEM268;nc|ENSG00000157693|Q5VZI3-3|TMEM268 nc|ENSG00000157693|Q5VZI3-2|TMEM268 nc|ENSG00000157693|Q5VZI3-2|TMEM268 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26629638671875 3 490.266239 1467.77689 NaN NaN NaN NaN NaN NaN NaN 69.704 1 66.124 65.624 66.624 -3.5798 0 0 0 0.22632 1 13129 13129 0.172 0 1 39475 5136 26425 26441 38793 38793 0.06170975522331901 RRYIIYNSRPM 11 Unmodified _RRYIIYNSRPM_ 0 0 0 nc|ENSG00000157693|Q5VZI3-2|TMEM268;ENSG00000157693|ENST00000288502|TMEM268;nc|ENSG00000157693|Q5VZI3-3|TMEM268 nc|ENSG00000157693|Q5VZI3-2|TMEM268 nc|ENSG00000157693|Q5VZI3-2|TMEM268 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2665100097656 3 490.266239 1467.77689 NaN NaN NaN NaN NaN NaN NaN 132.03 1 127.23 126.73 127.73 -4.799 0 0 0 0.22632 1 25419 25419 0.026206 0 1 39476 5136 26425 26441 38794 38794 0.06170975522331901 RRYLMLEERRF 11 Unmodified _RRYLMLEERRF_ 0 0 0 REV__nc|ENSG00000184949|F5H4B4-2|FAM227A REV__nc|ENSG00000184949|F5H4B4-2|FAM227A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6876831054688 3 523.620793 1567.84055 NaN NaN NaN NaN NaN NaN NaN 146.79 1 141.79 141.29 142.29 -5 0 0 0 0.23698 1 28409 28409 1.2148 0.2893 1 + 39477 18923 26426 26442 38795 38795 0.0793433595940769 RRYQRHYYYY 10 Unmodified _RRYQRHYYYY_ 0 0 0 REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6841430664062 3 523.25662 1566.74803 0.18646 9.7565E-05 -0.46029 -0.00024085 -0.27383 -0.00014329 523.256190540572 127.4 0.8307 127.4 126.85 127.68 0 49 23 3 0 0 0 0.76269 1 25193 25193 1.7423 0.52744 1 7314000 + 39478 16607 26427 26443 38796 38796 -0.012674257824301094 RRYQWVGHNEP 11 Unmodified _RRYQWVGHNEP_ 0 0 0 REV__ENST00000592194.1_1_17:66508568-66511566:+|nuORF REV__ENST00000592194.1_1_17:66508568-66511566:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2435302734375 3 481.24097 1440.70108 NaN NaN NaN NaN NaN NaN NaN 175.13 1 175.13 174.63 175.63 0 0 0 0 0.22632 1 36285 36285 0.50596 0.50539 1 + 39479 23347 26428 26444 38797 38797 -0.0016428533356247499 RRYRFRYSPLR 11 Unmodified _RRYRFRYSPLR_ 0 0 0 REV__ENSG00000142408|ENST00000270458|CACNG8 REV__ENSG00000142408|ENST00000270458|CACNG8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4013061523438 2 785.4473 1568.88005 NaN NaN NaN NaN NaN NaN NaN 135.2 1 130.31 129.81 130.81 -4.8951 0 0 0 0.22632 1 25972 25972 0.00056442 0 1 + 39480 16670 26429 26445 38798 38798 0.11836224025159936 RRYRVRTFLRK 11 Unmodified _RRYRVRTFLRK_ 0 0 0 ENST00000525757.1_1_11:123325460-123325514:+|nuORF ENST00000525757.1_1_11:123325460-123325514:+|nuORF ENST00000525757.1_1_11:123325460-123325514:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2336730957031 5 310.995873 1549.94298 -0.42522 -0.00013224 0.071359 2.2192E-05 -0.35386 -0.00011005 310.99591990289554 110.14 0.17159 110.14 110.09 110.26 0 5 4 2 0 0 0 0.82733 1 21673 21673 0 0 1 564000 39481 10903 26430 26446 38799 38799 0.19000789813185293 RRYYESFSEAQ 11 Unmodified _RRYYESFSEAQ_ 0 0 0 tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 tr|U7SV28|U7SV28_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7358703613281 3 479.224874 1434.65279 NaN NaN NaN NaN NaN NaN NaN 93.395 1 93.395 92.895 93.895 0 0 0 0 0.22632 1 18274 18274 0.11104 0 1 39482 26230 26431 26447 38800 38800 -0.047148237641295054 RRYYFELLHKQ 11 Unmodified _RRYYFELLHKQ_ 0 0 0 B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant;ENSG00000182272|ENST00000329962|B4GALNT4 B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 518.28466796875 3 518.284287 1551.83103 NaN NaN NaN NaN NaN NaN NaN 167.85 1 167.85 167.35 168.35 0 0 0 0 0.22632 1 34329 34329 0 0 1 39483 291 26432 26448 38801 38801 0.0771889094553444 RSCGSNSY 8 Unmodified _RSCGSNSY_ 0 0 0 ENSG00000006210|ENST00000006053|CX3CL1 ENSG00000006210|ENST00000006053|CX3CL1 ENSG00000006210|ENST00000006053|CX3CL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.228271484375 2 437.179609 872.344665 NaN NaN NaN NaN NaN NaN NaN 65.371 1 62.324 61.824 62.824 -3.047 0 0 0 0.21486 1 12652 12652 5.2307 0 1 39484 1006 26433 26449 38802 38802 -0.09661341496030218 RSCMTDAKK 9 Unmodified _RSCMTDAKK_ 0 0 0 nc|ENSG00000278311|Q9H3C7-2|GGNBP2;GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant;GGNBP2|p.D388Vfs*15|1|0.2|ENSG00000278311|chr17:36581474-36581475|-/GT|frameshift_variant;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2 nc|ENSG00000278311|Q9H3C7-2|GGNBP2 nc|ENSG00000278311|Q9H3C7-2|GGNBP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.1719665527344 3 347.172288 1038.49503 NaN NaN NaN NaN NaN NaN NaN 133.17 1 128.53 128.03 129.03 -4.6399 0 0 0 0.23508 1 26255 26255 0.96228 0 1 39485 8042 26434 26450 38803 38803 -0.022673178287504925 RSDELTRHF 9 Unmodified _RSDELTRHF_ 0 0 0 KLF8|p.R326C|1|0.09|ENSG00000102349|chrX:56284390-56284390|C/T|missense_variant;ENST00000358094.7_1_X:56295423-56310924:+|nuORF;ENST00000462627.5_1_X:56295800-56310924:+|nuORF;nc|ENSG00000102349|O95600-5|KLF8;ENSG00000067082|ENST00000497571|KLF6;ENSG00000109787|ENST00000261438|KLF3;ENSG00000102349|ENST00000468660|KLF8 KLF8|p.R326C|1|0.09|ENSG00000102349|chrX:56284390-56284390|C/T|missense_variant KLF8|p.R326C|1|0.09|ENSG00000102349|chrX:56284390-56284390|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7215881347656 3 387.53175 1159.57342 -0.094718 -3.6706E-05 -0.53362 -0.0002068 -0.62834 -0.0002435 387.8657205916533 33.424 0.41974 33.424 33.271 33.69 0 13 11 2 0 0 0 0.66526 1 6123 6123 33.821 22.327 1 949070 39486 1384 26435 26451 38804 38804 1.5740723711132887E-05 RSDELTRHY 9 Unmodified _RSDELTRHY_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;KLF12|p.A359T|1|0.26|ENSG00000118922|chr13:73695624-73695624|C/T|missense_variant;nc|ENSG00000118263|O75840-5|KLF7;ENSG00000119138|ENST00000377126|KLF9;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;ENSG00000118263|ENST00000309446|KLF7;ENSG00000105610|ENST00000264834|KLF1;ENSG00000118922|ENST00000703967|KLF12;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;ENSG00000127528|ENST00000248071|KLF2 ENSG00000102554|ENST00000377687|KLF5;ENSG00000127528|ENST00000248071|KLF2 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.252685546875 2 588.791444 1175.56833 0.303 0.00017841 0.022889 1.3477E-05 0.32589 0.00019188 588.7914607962001 19.307 0.6264 19.307 19.031 19.658 0 55 17 5 0 0 0 0.58804 1 3134 3134 13.906 6.2971 1 26823000 39487 2136;3480 26436 26452 38805 38805 -0.01242729790260455 RSDELTRHY 9 Unmodified _RSDELTRHY_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;KLF12|p.A359T|1|0.26|ENSG00000118922|chr13:73695624-73695624|C/T|missense_variant;nc|ENSG00000118263|O75840-5|KLF7;ENSG00000119138|ENST00000377126|KLF9;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;ENSG00000118263|ENST00000309446|KLF7;ENSG00000105610|ENST00000264834|KLF1;ENSG00000118922|ENST00000703967|KLF12;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;ENSG00000127528|ENST00000248071|KLF2 ENSG00000102554|ENST00000377687|KLF5;ENSG00000127528|ENST00000248071|KLF2 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.266845703125 2 588.791444 1175.56833 0.78957 0.00046489 -0.35551 -0.00020932 0.43406 0.00025557 588.7912465655675 20.929 0.46121 19.455 19.24 19.701 -1.4742 42 12 5 0 0 0 0.61228 1 3513 3513 12.241 2.8575 1 19463000 39488 2136;3480 26436 26452 38806 38806 -0.01242729790260455 RSDELTRHY 9 Unmodified _RSDELTRHY_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;KLF12|p.A359T|1|0.26|ENSG00000118922|chr13:73695624-73695624|C/T|missense_variant;nc|ENSG00000118263|O75840-5|KLF7;ENSG00000119138|ENST00000377126|KLF9;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;ENSG00000118263|ENST00000309446|KLF7;ENSG00000105610|ENST00000264834|KLF1;ENSG00000118922|ENST00000703967|KLF12;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;ENSG00000127528|ENST00000248071|KLF2 ENSG00000102554|ENST00000377687|KLF5;ENSG00000127528|ENST00000248071|KLF2 ENSG00000102554|ENST00000377687|KLF5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 588.791444 1175.56833 0.16623 9.7876E-05 0.24929 0.00014678 0.41553 0.00024466 588.7916065390385 20.777 0.58917 19.393 19.168 19.757 -1.3847 0.0081176 0.00027679 NaN 13.906 51 16 5 NaN NaN NaN NaN 0 NaN NaN 0 25293000 39489 2136;3480 26436 26452 -0.01242729790260455 RSDFYDSGE 9 Unmodified _RSDFYDSGE_ 0 0 0 REV__ENSG00000146426|ENST00000682666|TIAM2 REV__ENSG00000146426|ENST00000682666|TIAM2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 359.2109375 3 359.149082 1074.42542 NaN NaN NaN NaN NaN NaN NaN 85.45 1 81.738 81.238 82.238 -3.7117 0 0 0 0.23508 1 16325 16325 10.8 1.4164 1 + 39490 16889 26437 26453 38807 38807 -0.10881781972125282 RSDRNNSL 8 Unmodified _RSDRNNSL_ 0 0 0 nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML nc|ENSG00000160593|Q86YT9-4|JAML nc|ENSG00000160593|Q86YT9-4|JAML MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.245361328125 2 481.244129 960.473705 NaN NaN NaN NaN NaN NaN NaN 97.99 1 97.99 97.49 98.49 0 0 0 0 0.23312 1 19206 19206 6.2058 0 1 39491 5257 26438 26454 38808 38808 -0.008112435415796426 RSDRREDYY 9 Unmodified _RSDRREDYY_ 0 0 0 ENSG00000187555|ENST00000344836|USP7;nc|ENSG00000187555|Q93009-3|USP7;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;USP7|p.T440Nfs*4|1|0.17|ENSG00000187555|chr16:8906535-8906536|-/T|frameshift_variant ENSG00000187555|ENST00000344836|USP7 ENSG00000187555|ENST00000344836|USP7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7760009765625 2 630.291808 1258.56906 0.34554 0.00021779 0.23838 0.00015025 0.58392 0.00036804 630.2919518690003 18.144 0.83593 18.144 17.952 18.788 0 55 23 5 0 0 0 7.3567E-06 1 2889 2889 139.78 65.582 1 44990000 39492 7114 26439 26455 38809 38809 -0.04987935141184607 RSDRREDYY 9 Unmodified _RSDRREDYY_ 0 0 0 ENSG00000187555|ENST00000344836|USP7;nc|ENSG00000187555|Q93009-3|USP7;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;USP7|p.T440Nfs*4|1|0.17|ENSG00000187555|chr16:8906535-8906536|-/T|frameshift_variant ENSG00000187555|ENST00000344836|USP7 ENSG00000187555|ENST00000344836|USP7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7555541992188 2 630.291808 1258.56906 -0.072971 -4.5993E-05 0.60304 0.00038009 0.53007 0.0003341 630.2921729834186 19.487 0.48347 18.162 17.968 18.451 -1.3251 42 13 4 0 0 0 0.11282 1 2999 2999 51.415 33.269 1 30695000 39493 7114 26439 26455 38810 38810 -0.04987935141184607 RSDSYMGL 8 Unmodified _RSDSYMGL_ 0 0 0 ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.1438293457031 2 464.713285 927.412016 -0.039113 -1.8177E-05 -3.3363 -0.0015504 -3.3754 -0.0015686 464.71159801263025 54.242 0.84245 51.104 50.501 51.344 -3.1377 34 23 2 0 0 0 1.0011 1 10071 10071 4.3292 0 1 3112500 39494 1142 26440 26456 38811 38811 -0.05459311285073909 RSDTINRG 8 Unmodified _RSDTINRG_ 0 0 0 REV__KHSRP|p.G663Vfs*60|1|0.14|ENSG00000088247|chr19:6415280-6415280|C/-|frameshift_variant REV__KHSRP|p.G663Vfs*60|1|0.14|ENSG00000088247|chr19:6415280-6415280|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24273681640625 2 459.741222 917.467892 -0.11634 -5.3488E-05 0.58531 0.00026909 0.46897 0.00021561 459.7414211923907 84.241 2.1503 80.577 79.741 81.892 -3.6641 112 61 2 0 0 0 0.60622 2 16629 16627;16629 21.747 5.8995 1 3560400 + 39495 23711 26441 26457 38812;38813 38813 0.005856579467604206 RSDTINRG 8 Unmodified _RSDTINRG_ 0 0 0 REV__KHSRP|p.G663Vfs*60|1|0.14|ENSG00000088247|chr19:6415280-6415280|C/-|frameshift_variant REV__KHSRP|p.G663Vfs*60|1|0.14|ENSG00000088247|chr19:6415280-6415280|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2433166503906 2 459.741222 917.467892 0.13533 6.2217E-05 0.47176 0.00021689 0.60709 0.00027911 459.74133542838473 84.65 2.2989 80.741 79.79 82.088 -3.9093 142 65 3 0 0 0 0.69031 2 16222 16219;16222 15.847 1.9616 1 4340800 + 39496 23711 26441 26457 38814;38815 38815 0.005856579467604206 RSDTINRG 8 Unmodified _RSDTINRG_ 0 0 0 REV__KHSRP|p.G663Vfs*60|1|0.14|ENSG00000088247|chr19:6415280-6415280|C/-|frameshift_variant REV__KHSRP|p.G663Vfs*60|1|0.14|ENSG00000088247|chr19:6415280-6415280|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.242919921875 2 459.741222 917.467892 -0.022191 -1.0202E-05 0.55997 0.00025744 0.53778 0.00024724 459.741429740106 84.22 2.3722 80.508 79.816 82.188 -3.7117 142 67 3 0 0 0 0.60622 2 16239 16236;16239 21.747 4.6601 1 4900000 + 39497 23711 26441 26457 38816;38817 38817 0.005856579467604206 RSDVRLYGMIY 11 Unmodified _RSDVRLYGMIY_ 0 0 0 nc|ENSG00000142002|Q86TI2-4|DPP9;DPP9|p.F814Sfs*10|1|0.34|ENSG00000142002|chr19:4679893-4679893|A/-|frameshift_variant;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000597145.5_1_19:4685559-4714096:-|nuORF nc|ENSG00000142002|Q86TI2-4|DPP9 nc|ENSG00000142002|Q86TI2-4|DPP9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2240295410156 3 458.239578 1371.69691 NaN NaN NaN NaN NaN NaN NaN 63.095 1 59.838 59.338 60.338 -3.2567 0 0 0 0.22632 1 11839 11839 0.172 0 1 39498 885 26442 26458 38818 38818 0.025924891285058038 RSDYLFDQ 8 Unmodified _RSDYLFDQ_ 0 0 0 REV__ENSG00000271503|ENST00000651122|CCL5 REV__ENSG00000271503|ENST00000651122|CCL5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2713012695312 2 522.243264 1042.47197 NaN NaN NaN NaN NaN NaN NaN 118.99 1 118.99 118.49 119.49 0 0 0 0 0.22628 1 23439 23439 6.3914 4.6995 1 + 39499 19916 26443 26459 38819 38819 -0.047562973502181194 RSEFVVSGSD 10 Unmodified _RSEFVVSGSD_ 0 0 0 DCAF8L2|p.V527Cfs*7|1|0.39|ENSG00000189186|chrX:27748474-27748474|G/-|frameshift_variant;ENSG00000226372|ENST00000441525|DCAF8L1;ENSG00000189186|ENST00000451261|DCAF8L2 DCAF8L2|p.V527Cfs*7|1|0.39|ENSG00000189186|chrX:27748474-27748474|G/-|frameshift_variant DCAF8L2|p.V527Cfs*7|1|0.39|ENSG00000189186|chrX:27748474-27748474|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2661743164062 2 541.759278 1081.504 0.56595 0.00030661 -0.85249 -0.00046184 -0.28654 -0.00015524 541.7588043319481 43.277 0.20963 43.277 43.223 43.433 0 6 5 2 0 0 0 1.1138 1 8122 8122 14.405 4.3315 1 413400 39500 788 26444 26460 38820 38820 -0.03348929667026823 RSEKMTLSY 9 Unmodified _RSEKMTLSY_ 0 0 0 nc|ENSG00000101935|Q9Y4X0-4|AMMECR1;nc|ENSG00000101935|Q9Y4X0-3|AMMECR1;ENSG00000101935|ENST00000262844|AMMECR1 nc|ENSG00000101935|Q9Y4X0-4|AMMECR1 nc|ENSG00000101935|Q9Y4X0-4|AMMECR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 372.10614013671875 3 372.190225 1113.54884 -0.73353 -0.00027301 0.60006 0.00022334 -0.13347 -4.9675E-05 372.1904663802403 53.157 0.6503 50.062 49.724 50.374 -3.0954 49 18 4 0 0 0 0.78865 1 9828 9828 10.151 7.0783 1 11060000 39501 2097 26445 26461 38821 38821 -0.0033882212533171696 RSEKMTLSY 9 Unmodified _RSEKMTLSY_ 0 0 0 nc|ENSG00000101935|Q9Y4X0-4|AMMECR1;nc|ENSG00000101935|Q9Y4X0-3|AMMECR1;ENSG00000101935|ENST00000262844|AMMECR1 nc|ENSG00000101935|Q9Y4X0-4|AMMECR1 nc|ENSG00000101935|Q9Y4X0-4|AMMECR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 372.190225 1113.54884 0.010593 3.9426E-06 -0.098291 -3.6583E-05 -0.087698 -3.264E-05 372.1901615643583 50.307 0.61214 50.307 49.992 50.604 0 0.16097 -0.00027582 NaN 10.151 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 8673600 39502 2097 26445 26461 -0.0033882212533171696 RSEKMTLSY 9 Unmodified _RSEKMTLSY_ 0 0 0 nc|ENSG00000101935|Q9Y4X0-4|AMMECR1;nc|ENSG00000101935|Q9Y4X0-3|AMMECR1;ENSG00000101935|ENST00000262844|AMMECR1 nc|ENSG00000101935|Q9Y4X0-4|AMMECR1 nc|ENSG00000101935|Q9Y4X0-4|AMMECR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 372.190225 1113.54884 -0.44493 -0.0001656 0.27537 0.00010249 -0.16956 -6.3109E-05 372.19034718568713 52.974 0.59491 50.09 49.825 50.42 -2.8837 -0.055857 0.0001414 NaN 10.151 41 16 3 NaN NaN NaN NaN 0 NaN NaN 0 15057000 39503 2097 26445 26461 -0.0033882212533171696 RSEKMTLSY 9 Unmodified _RSEKMTLSY_ 0 0 0 nc|ENSG00000101935|Q9Y4X0-4|AMMECR1;nc|ENSG00000101935|Q9Y4X0-3|AMMECR1;ENSG00000101935|ENST00000262844|AMMECR1 nc|ENSG00000101935|Q9Y4X0-4|AMMECR1 nc|ENSG00000101935|Q9Y4X0-4|AMMECR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 372.190225 1113.54884 0.055128 2.0518E-05 -0.23814 -8.8633E-05 -0.18301 -6.8115E-05 372.19016225344666 53.214 0.49003 50.126 49.866 50.356 -3.0876 -0.020385 -0.00043197 NaN 10.151 43 13 4 NaN NaN NaN NaN 0 NaN NaN 0 16516000 39504 2097 26445 26461 -0.0033882212533171696 RSEKPNWDY 9 Unmodified _RSEKPNWDY_ 0 0 0 ENSG00000135900|ENST00000258383|MRPL44;MRPL44|p.H69R|1|0.38|ENSG00000135900|chr2:223959560-223959560|A/G|missense_variant ENSG00000135900|ENST00000258383|MRPL44 ENSG00000135900|ENST00000258383|MRPL44 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 399.2018737792969 3 398.856122 1193.54654 -0.27207 -0.00010852 0.075085 2.9948E-05 -0.19698 -7.8567E-05 399.19044853466653 48.124 0.56934 45.255 44.983 45.552 -2.869 17 15 2 0 0 0 0.74567 1 9090 9090 4.1895 1.9067 1 784580 39505 3961 26446 26462 38822 38822 -0.042495345388033456 RSEKPNWDY 9 Unmodified _RSEKPNWDY_ 0 0 0 ENSG00000135900|ENST00000258383|MRPL44;MRPL44|p.H69R|1|0.38|ENSG00000135900|chr2:223959560-223959560|A/G|missense_variant ENSG00000135900|ENST00000258383|MRPL44 ENSG00000135900|ENST00000258383|MRPL44 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 398.856122 1193.54654 0.26241 0.00010467 -0.43373 -0.00017299 -0.17131 -6.8329E-05 398.8558358460733 45.159 0.49292 45.159 44.777 45.27 0 -0.03698 -0.00034987 NaN 4.1895 22 13 3 NaN NaN NaN NaN 0 NaN NaN 0 871910 39506 3961 26446 26462 -0.042495345388033456 RSEKPNWDY 9 Unmodified _RSEKPNWDY_ 0 0 0 ENSG00000135900|ENST00000258383|MRPL44;MRPL44|p.H69R|1|0.38|ENSG00000135900|chr2:223959560-223959560|A/G|missense_variant ENSG00000135900|ENST00000258383|MRPL44 ENSG00000135900|ENST00000258383|MRPL44 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 398.856122 1193.54654 -0.0013699 -5.464E-07 -0.062884 -2.5082E-05 -0.064254 -2.5628E-05 398.8560268682635 48.116 0.59332 45.174 44.899 45.493 -2.9421 -0.021912 9.3866E-05 NaN 4.1895 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 749090 39507 3961 26446 26462 -0.042495345388033456 RSETLLSLY 9 Unmodified _RSETLLSLY_ 0 0 0 REV__ENST00000495096.5_1_22:19958242-19966598:-|nuORF REV__ENST00000495096.5_1_22:19958242-19966598:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2591552734375 2 541.298039 1080.58152 0.34838 0.00018858 -0.07839 -4.2432E-05 0.26999 0.00014614 541.2980229250608 123.81 0.8039 119.22 118.89 119.7 -4.5926 35 22 2 0 0 0 0.60061 1 23895 23895 13.042 0 1 2948500 + 39508 14645 26447 26463 38823 38823 0.04445708269145143 RSFETQLSR 9 Unmodified _RSFETQLSR_ 0 0 0 nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12;ENST00000518375.1_1_8:105502903-105507508:-|nuORF nc|ENSG00000147650|Q9Y561-2|LRP12 nc|ENSG00000147650|Q9Y561-2|LRP12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2159423828125 3 375.2 1122.57817 NaN NaN NaN NaN NaN NaN NaN 148.94 1 143.79 143.29 144.29 -5.1557 0 0 0 0.19699 1 28844 28844 0.40827 0 1 39509 4714 26448 26464 38824 38824 0.02178458215144019 RSFSLDIKSA 10 Unmodified _RSFSLDIKSA_ 0 0 0 ENSG00000184545|ENST00000397374|DUSP8 ENSG00000184545|ENST00000397374|DUSP8 ENSG00000184545|ENST00000397374|DUSP8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2084045410156 3 375.208384 1122.60332 NaN NaN NaN NaN NaN NaN NaN 16.009 1 14.655 14.155 15.155 -1.3534 0 0 0 0.22588 1 2245 2245 10.315 2.3698 1 39510 6917 26449 26465 38825 38825 0.04692513017721467 RSGAEGLGIF 10 Unmodified _RSGAEGLGIF_ 0 0 0 ENST00000267205.6_1_12:122216327-122216612:-|nuORF ENST00000267205.6_1_12:122216327-122216612:-|nuORF ENST00000267205.6_1_12:122216327-122216612:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.04656982421875 3 336.182058 1005.52434 NaN NaN NaN NaN NaN NaN NaN 82.881 1 82.881 82.381 83.381 0 0 0 0 0.22588 1 16156 16156 2.086 0.89267 1 39511 8381 26450 26466 38826 38826 0.0218028578343592 RSGAEGLGIF 10 Unmodified _RSGAEGLGIF_ 0 0 0 ENST00000267205.6_1_12:122216327-122216612:-|nuORF ENST00000267205.6_1_12:122216327-122216612:-|nuORF ENST00000267205.6_1_12:122216327-122216612:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.0470275878906 3 336.182058 1005.52434 NaN NaN NaN NaN NaN NaN NaN 84.528 1 84.528 84.028 85.028 0 0 0 0 0.22588 1 16490 16490 2.086 0.89267 1 39512 8381 26450 26466 38827 38827 0.0218028578343592 RSGAEGLGIF 10 Unmodified _RSGAEGLGIF_ 0 0 0 ENST00000267205.6_1_12:122216327-122216612:-|nuORF ENST00000267205.6_1_12:122216327-122216612:-|nuORF ENST00000267205.6_1_12:122216327-122216612:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.2164306640625 3 336.182058 1005.52434 NaN NaN NaN NaN NaN NaN NaN 108.25 1 108.25 107.75 108.75 0 0 0 0 0.22588 1 21287 21287 2.086 0.24177 1 39513 8381 26450 26466 38828 38828 0.0218028578343592 RSGAEGLGIF 10 Unmodified _RSGAEGLGIF_ 0 0 0 ENST00000267205.6_1_12:122216327-122216612:-|nuORF ENST00000267205.6_1_12:122216327-122216612:-|nuORF ENST00000267205.6_1_12:122216327-122216612:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.1509094238281 3 336.182058 1005.52434 NaN NaN NaN NaN NaN NaN NaN 77.296 1 73.833 73.333 74.333 -3.4633 0 0 0 0.22588 1 15088 15088 2.086 0.17963 1 39514 8381 26450 26466 38829 38829 0.0218028578343592 RSGAYVLY 8 Unmodified _RSGAYVLY_ 0 0 0 REV__ADAMTS5|p.G95S|1|0.54|ENSG00000154736|chr21:26966109-26966109|C/T|missense_variant REV__ADAMTS5|p.G95S|1|0.54|ENSG00000154736|chr21:26966109-26966109|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24969482421875 2 464.747985 927.481417 0.048519 2.2549E-05 0.032229 1.4978E-05 0.080748 3.7528E-05 464.7479402343434 60.306 0.59967 56.992 56.764 57.364 -3.3139 22 16 2 0 0 0 8448 1 11282 11282 1.7423 0 1 865080 + 39515 12948 26451 26467 38830 38830 0.014775157260032756 RSGFSEGLSF 10 Unmodified _RSGFSEGLSF_ 0 0 0 REV__ENST00000395449.7_1_11:47187835-47198404:-|nuORF REV__ENST00000395449.7_1_11:47187835-47198404:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7787475585938 2 543.764363 1085.51417 0.21743 0.00011823 0.022525 1.2248E-05 0.23996 0.00013048 543.7644275599007 65.927 0.61317 62.88 62.578 63.191 -3.047 42 17 3 0 0 0 0.23665 1 12730 12730 3.5927 3.5288 1 6290200 + 39516 17000 26452 26468 38831 38831 -0.025163219418118388 RSHLRVGIW 9 Unmodified _RSHLRVGIW_ 0 0 0 REV__ENST00000564541.1_1_6:96025158-96025221:-|nuORF REV__ENST00000564541.1_1_6:96025158-96025221:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2209167480469 3 375.220958 1122.64105 NaN NaN NaN NaN NaN NaN NaN 141.63 1 141.63 141.13 142.13 0 0 0 0 0.23508 1 28226 28226 4.897 0.70751 1 + 39517 23092 26453 26469 38832 38832 0.08463068793844286 RSHQCKGI 8 Unmodified _RSHQCKGI_ 0 0 0 REV__ENST00000494982.1_1_1:112251877-112255115:+|nuORF REV__ENST00000494982.1_1_1:112251877-112255115:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16473388671875 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 151.8 1 146.62 146.12 147.12 -5.1759 0 0 0 0.21486 1 29417 29417 0.45834 0 1 + 39518 22373 26454 26470 38833 38833 0.004232097999192774 RSHWRYRRRYS 11 Unmodified _RSHWRYRRRYS_ 0 0 0 ENST00000465608.1_1_10:99344097-99344382:+|nuORF ENST00000465608.1_1_10:99344097-99344382:+|nuORF ENST00000465608.1_1_10:99344097-99344382:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2662353515625 3 541.622296 1621.84506 NaN NaN NaN NaN NaN NaN NaN 167.09 1 162.3 161.8 162.8 -4.7898 0 0 0 0.22632 1 33654 33654 0.094841 0.094841 1 39519 10124 26455 26471 38834 38834 0.059009812172007514 RSILKRQKHLR 11 Unmodified _RSILKRQKHLR_ 0 0 0 nc|ENSG00000127423|Q9H7T9-2|AUNIP nc|ENSG00000127423|Q9H7T9-2|AUNIP nc|ENSG00000127423|Q9H7T9-2|AUNIP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 359.2109375 4 359.48366 1433.90553 -0.63851 -0.00022954 -0.98038 -0.00035243 -1.6189 -0.00058197 359.48313229236857 85.658 0.83339 81.947 81.632 82.465 -3.7117 51 23 4 0 0 0 0.96201 1 16325 16325 1.1098 0.70149 1 2454600 39520 12309 26456 26472 38835 38835 0.2059369854760007 RSIRLPETI 9 Unmodified _RSIRLPETI_ 0 0 0 PLEK|p.N260Tfs*4|1|0.07|ENSG00000115956|chr2:68393174-68393174|A/-|frameshift_variant;ENSG00000115956|ENST00000234313|PLEK PLEK|p.N260Tfs*4|1|0.07|ENSG00000115956|chr2:68393174-68393174|A/-|frameshift_variant PLEK|p.N260Tfs*4|1|0.07|ENSG00000115956|chr2:68393174-68393174|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.1809997558594 3 362.220624 1083.64004 NaN NaN NaN NaN NaN NaN NaN 133.13 1 128.49 127.99 128.99 -4.6399 0 0 0 0.23508 1 26247 26247 2.7352 0 1 39521 2896 26457 26473 38836 38836 0.10156809634281672 RSKNDSKPY 9 Unmodified _RSKNDSKPY_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7836303710938 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 66.243 1 63.196 62.696 63.696 -3.047 0 0 0 0.22621 1 12831 12831 15.847 0 1 39522 1232 26458 26474 38837 38837 0.008587693238041538 RSLEAPGW 8 Unmodified _RSLEAPGW_ 0 0 0 ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2387390136719 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 106.97 1 106.97 106.47 107.47 0 0 0 0 0.21486 1 21032 21032 10.183 0.83596 1 39523 2524 26459 26475 38838 38838 0.0003634506618936939 RSLFEGYAT 9 Unmodified _RSLFEGYAT_ 0 0 0 REV__nc|ENSG00000165219|Q14C86-3|GAPVD1 REV__nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2758178710938 2 522.261456 1042.50836 0.12367 6.4591E-05 -0.0035604 -1.8595E-06 0.12011 6.2731E-05 522.2614041688003 93.02 0.72517 89.176 88.883 89.608 -3.844 32 20 2 0 0 0 0.39168 1 17901 17901 2.6312 0 1 2904400 + 39524 17747 26460 26476 38839 38839 -0.011194204534831442 RSLGPLLLLL 10 Unmodified _RSLGPLLLLL_ 0 0 0 CCBE1|p.E319Rfs*80|1|0.29|ENSG00000183287|chr18:59438143-59438143|C/-|frameshift_variant;ENSG00000183287|ENST00000439986|CCBE1 CCBE1|p.E319Rfs*80|1|0.29|ENSG00000183287|chr18:59438143-59438143|C/-|frameshift_variant CCBE1|p.E319Rfs*80|1|0.29|ENSG00000183287|chr18:59438143-59438143|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.777099609375 2 547.868434 1093.72232 NaN NaN NaN NaN NaN NaN NaN 164.01 1 158.95 158.45 159.45 -5.0648 0 0 0 2.8426 1 31954 31954 0.84494 0 1 39525 406 26461 26477 38840 38840 0.1792033171325329 RSLKKKRPG 9 Unmodified _RSLKKKRPG_ 0 0 0 REV__ENST00000362065.8_1_15:31196185-31196742:+|nuORF REV__ENST00000362065.8_1_15:31196185-31196742:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0725402832031 3 357.236608 1068.688 -0.4702 -0.00016797 0.58039 0.00020734 0.11019 3.9364E-05 357.23679179456724 52.862 0.72601 49.978 49.591 50.317 -2.8837 48 20 3 0 0 0 0.87609 1 10008 10008 4.5289 1.7937 1 6696600 + 39526 20897 26462 26478 38841 38841 0.1563992834499004 RSLKKKRPG 9 Unmodified _RSLKKKRPG_ 0 0 0 REV__ENST00000362065.8_1_15:31196185-31196742:+|nuORF REV__ENST00000362065.8_1_15:31196185-31196742:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 357.236608 1068.688 -0.063739 -2.277E-05 -0.17189 -6.1406E-05 -0.23563 -8.4176E-05 357.23654328189207 50.159 0.64311 50.159 49.893 50.536 0 0.13145 -0.00049657 NaN 4.5289 50 18 4 NaN NaN NaN NaN 0 NaN NaN 0 11887000 + 39527 20897 26462 26478 0.1563992834499004 RSLKKKRPG 9 Unmodified _RSLKKKRPG_ 0 0 0 REV__ENST00000362065.8_1_15:31196185-31196742:+|nuORF REV__ENST00000362065.8_1_15:31196185-31196742:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 357.236608 1068.688 0.054408 1.9436E-05 -0.0081719 -2.9193E-06 0.046236 1.6517E-05 357.2365860002975 53.12 0.66724 50.032 49.654 50.321 -3.0876 0.0043401 -0.00032111 NaN 4.5289 46 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6259000 + 39528 20897 26462 26478 0.1563992834499004 RSLRIKRPLLH 11 Unmodified _RSLRIKRPLLH_ 0 0 0 REV__ENSG00000233436|ENST00000422652|BTBD18 REV__ENSG00000233436|ENST00000422652|BTBD18 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 695.3294067382812 2 694.951687 1387.88882 NaN NaN NaN NaN NaN NaN NaN 170.7 1 165.91 165.41 166.41 -4.7898 0 0 0 0.22632 1 34661 34661 0 0 1 + 39529 19757 26463 26479 38842 38842 0.21039197661662 RSLRVLAPA 9 Unmodified _RSLRVLAPA_ 0 0 0 nc|ENSG00000168229|Q13258-2|PTGDR;ENSG00000168229|ENST00000306051|PTGDR nc|ENSG00000168229|Q13258-2|PTGDR nc|ENSG00000168229|Q13258-2|PTGDR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 491.81036376953125 2 491.811451 981.608348 NaN NaN NaN NaN NaN NaN NaN 148.59 1 143.44 142.94 143.94 -5.1557 0 0 0 0.23508 1 28773 28773 4.3292 0 1 39530 5888 26464 26480 38843 38843 0.11680861670970444 RSMKAILSFA 10 Unmodified _RSMKAILSFA_ 0 0 0 nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF;ENST00000523276.1_1_6:146240471-146248402:-|nuORF;ENST00000519632.5_1_6:146239221-146248402:-|nuORF nc|ENSG00000146414|Q149N8-4|SHPRH nc|ENSG00000146414|Q149N8-4|SHPRH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21612548828125 3 375.214593 1122.62195 NaN NaN NaN NaN NaN NaN NaN 151.42 1 151.42 150.92 151.92 0 0 0 0 2.8426 1 30322 30322 0.043787 0 1 39531 4653 26465 26481 38844 38844 0.06554351387921997 RSMTIFLKQ 9 Unmodified _RSMTIFLKQ_ 0 0 0 REV__ENSG00000111241|ENST00000228837|FGF6 REV__ENSG00000111241|ENST00000228837|FGF6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21600341796875 3 375.214593 1122.62195 NaN NaN NaN NaN NaN NaN NaN 138.88 1 138.88 138.38 139.38 0 0 0 0 0.19677 1 27589 27589 0.029283 0.016017 1 + 39532 15235 26466 26482 38845 38845 0.06554351387921997 RSMTIFLKQ 9 Unmodified _RSMTIFLKQ_ 0 0 0 REV__ENSG00000111241|ENST00000228837|FGF6 REV__ENSG00000111241|ENST00000228837|FGF6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21356201171875 3 375.214593 1122.62195 NaN NaN NaN NaN NaN NaN NaN 96.089 1 92.208 91.708 92.708 -3.881 0 0 0 0.19636 1 18442 18442 0.0033805 0.0019993 1 + 39533 15235 26466 26482 38846 38846 0.06554351387921997 RSMYRLKAV 9 Unmodified _RSMYRLKAV_ 0 0 0 REV__ENSG00000058729|ENST00000283109|RIOK2 REV__ENSG00000058729|ENST00000283109|RIOK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2170104980469 3 375.218337 1122.63318 NaN NaN NaN NaN NaN NaN NaN 146.46 1 141.46 140.96 141.96 -5 0 0 0 0.23508 1 28344 28344 7.1017 1.699 1 + 39534 14131 26467 26483 38847 38847 0.0767717348203405 RSPKRLRKKYY 11 Unmodified _RSPKRLRKKYY_ 0 0 0 REV__nc|ENSG00000009950|Q9NP71-5|MLXIPL REV__nc|ENSG00000009950|Q9NP71-5|MLXIPL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 747.9573974609375 2 747.954427 1493.8943 NaN NaN NaN NaN NaN NaN NaN 167.71 1 162.81 162.31 163.31 -4.8916 0 0 0 0.22632 1 33014 33014 0.03141 0 1 + 39535 13914 26468 26484 38848 38848 0.16710876453475976 RSPLRHRPPPP 11 Unmodified _RSPLRHRPPPP_ 0 0 0 REV__ENST00000521689.5_1_8:98881135-98900426:+|nuORF REV__ENST00000521689.5_1_8:98881135-98900426:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2287902832031 3 437.258184 1308.75272 NaN NaN NaN NaN NaN NaN NaN 40.493 1 37.858 37.358 38.358 -2.6348 0 0 0 0.22632 1 7547 7547 1.4074 0 1 + 39536 22651 26469 26485 38849 38849 0.11069503150974924 RSQMARNVWFF 11 Unmodified _RSQMARNVWFF_ 0 0 0 nc|ENSG00000064763|Q96K12-2|FAR2;ENSG00000064763|ENST00000536681|FAR2 nc|ENSG00000064763|Q96K12-2|FAR2 nc|ENSG00000064763|Q96K12-2|FAR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2373046875 3 481.243434 1440.70847 NaN NaN NaN NaN NaN NaN NaN 27.746 1 25.75 25.25 26.25 -1.9962 0 0 0 0.22632 1 4653 4653 5.4027 1.5264 1 39537 1343 26470 26486 38850 38850 0.005747309424577907 RSRAEYTKI 9 Unmodified _RSRAEYTKI_ 0 0 0 REV__ENSG00000063169|ENST00000594866|BICRA REV__ENSG00000063169|ENST00000594866|BICRA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2119445800781 3 375.212128 1122.61456 -0.10911 -4.0939E-05 0.46562 0.00017471 0.35651 0.00013377 375.2121346973518 22.506 0.35214 21.053 20.838 21.19 -1.4535 16 9 2 0 0 0 0.64764 1 3568 3568 0.96228 0.93299 1 362920 + 39538 14157 26471 26487 38851 38851 0.058153351118335195 RSREKRRRRRR 11 Unmodified _RSREKRRRRRR_ 0 0 0 SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant;ENSG00000126461|ENST00000360565|SCAF1 SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 538.1436767578125 3 538.003622 1610.98904 NaN NaN NaN NaN NaN NaN NaN 65.523 1 65.523 65.023 66.023 0 0 0 0 0.23698 1 12637 12637 0 0 1 39539 3431 26472 26488 38852 38852 0.20798247767993416 RSRKTVFFT 9 Unmodified _RSRKTVFFT_ 0 0 0 ENST00000297338.6_1_8:117866496-117866559:-|nuORF ENST00000297338.6_1_8:117866496-117866559:-|nuORF ENST00000297338.6_1_8:117866496-117866559:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2193908691406 3 381.220735 1140.64038 NaN NaN NaN NaN NaN NaN NaN 45.074 1 42.208 41.708 42.708 -2.8653 0 0 0 0.23508 1 8177 8177 4.5289 1.2092 1 39540 8521 26473 26489 38853 38853 0.07568229354114919 RSRLDSYVR 9 Unmodified _RSRLDSYVR_ 0 0 0 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.319580078125 2 576.317628 1150.6207 NaN NaN NaN NaN NaN NaN NaN 153.37 1 153.37 152.87 153.87 0 0 0 0 0.19636 1 30728 30728 2.4985 0 1 39541 6033 26474 26490 38854 38854 0.05141853343366165 RSRQRQRRRWL 11 Unmodified _RSRQRQRRRWL_ 0 0 0 REV__ENST00000263754.4_1_3:20081618-20081714:+|nuORF REV__ENST00000263754.4_1_3:20081618-20081714:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2789306640625 3 533.317207 1596.92979 NaN NaN NaN NaN NaN NaN NaN 173.54 1 168.75 168.25 169.25 -4.7898 0 0 0 0.22632 1 35407 35407 0.094841 0 1 + 39542 20220 26475 26491 38855 38855 0.1552035175382116 RSRQSRREEG 10 Unmodified _RSRQSRREEG_ 0 0 0 REV__ENST00000284259.11_1_11:120894926-120916410:+|nuORF REV__ENST00000284259.11_1_11:120894926-120916410:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7687377929688 2 630.829423 1259.64429 NaN NaN NaN NaN NaN NaN NaN 105.67 1 101.3 100.8 101.8 -4.3764 0 0 0 2.8426 1 20259 20259 1.9064 1.8626 1 + 39543 20326 26476 26492 38856 38856 0.02485667109908718 RSRRRNDHRRR 11 Unmodified _RSRRRNDHRRR_ 0 0 0 REV__nc|ENSG00000205937|Q15287-3|RNPS1 REV__nc|ENSG00000205937|Q15287-3|RNPS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2721557617188 3 522.300327 1563.87915 NaN NaN NaN NaN NaN NaN NaN 27.029 1 25.106 24.606 25.606 -1.9222 0 0 0 0.22632 1 4499 4499 0.50596 0.41111 1 + 39544 19607 26477 26493 38857 38857 0.11976822428800915 RSRVVIFSK 9 Unmodified _RSRVVIFSK_ 0 0 0 ENSG00000197763|ENST00000524230|TXNRD3;ENST00000524230.6_3_3:126326756-126373974:-|nuORF ENSG00000197763|ENST00000524230|TXNRD3 ENSG00000197763|ENST00000524230|TXNRD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 365.2289733886719 3 364.560981 1090.66111 -0.56621 -0.00020642 0.85844 0.00031296 0.29224 0.00010654 364.5612525920144 15.478 0.40303 14.256 14.067 14.47 -1.2219 26 11 3 0 0 0 0.25976 1 2172 2172 17.113 7.039 1 2830000 39545 7396 26478 26494 38858 38858 0.11940819733808894 RSRVVIFSK 9 Unmodified _RSRVVIFSK_ 0 0 0 ENSG00000197763|ENST00000524230|TXNRD3;ENST00000524230.6_3_3:126326756-126373974:-|nuORF ENSG00000197763|ENST00000524230|TXNRD3 ENSG00000197763|ENST00000524230|TXNRD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 364.560981 1090.66111 -0.33243 -0.00012119 0.36282 0.00013227 0.030384 1.1077E-05 364.5610702638723 14.439 0.35023 14.439 14.211 14.561 0 0.10532 -0.00034565 NaN 17.113 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 4013800 39546 7396 26478 26494 0.11940819733808894 RSRVVIFSK 9 Unmodified _RSRVVIFSK_ 0 0 0 ENSG00000197763|ENST00000524230|TXNRD3;ENST00000524230.6_3_3:126326756-126373974:-|nuORF ENSG00000197763|ENST00000524230|TXNRD3 ENSG00000197763|ENST00000524230|TXNRD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 364.560981 1090.66111 -0.8159 -0.00029744 0.8996 0.00032796 0.083705 3.0516E-05 364.56126688650323 15.494 0.38036 14.307 14.094 14.474 -1.1872 -0.027254 0.00024142 NaN 17.113 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2285300 39547 7396 26478 26494 0.11940819733808894 RSSIGKLCK 9 Unmodified _RSSIGKLCK_ 0 0 0 REV__ENSG00000215262|ENST00000399881|KCNU1 REV__ENSG00000215262|ENST00000399881|KCNU1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 331.2010192871094 3 331.195421 990.564435 NaN NaN NaN NaN NaN NaN NaN 87.994 1 84.201 83.701 84.701 -3.7926 0 0 0 0.23508 1 17209 17209 2.4985 0 1 + 39548 19686 26479 26495 38859 38859 0.0687750918234542 RSSLGGRDLY 10 Unmodified _RSSLGGRDLY_ 0 0 0 ENSG00000162664|ENST00000340281|ZNF326 ENSG00000162664|ENST00000340281|ZNF326 ENSG00000162664|ENST00000340281|ZNF326 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21136474609375 3 375.2 1122.57817 -0.29651 -0.00011125 0.39179 0.000147 0.095279 3.5749E-05 375.2000605916974 47.598 0.59216 44.729 44.391 44.983 -2.869 37 16 3 0 0 0 0.32283 2 9021 8967;9021 35.996 11.114 1 7732200 39549 5351 26480 26496 38860;38861 38861 0.021784582151667564 RSSLGGRDLY 10 Unmodified _RSSLGGRDLY_ 0 0 0 ENSG00000162664|ENST00000340281|ZNF326 ENSG00000162664|ENST00000340281|ZNF326 ENSG00000162664|ENST00000340281|ZNF326 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21295166015625 3 375.2 1122.57817 0.0086351 3.2399E-06 0.0077592 2.9112E-06 0.016394 6.1511E-06 375.19986900304673 47.687 0.73195 44.745 44.342 45.074 -2.9421 42 20 3 0 0 0 0.43776 1 8730 8730 28.271 5.4956 1 5739000 39550 5351 26480 26496 38862 38862 0.021784582151667564 RSSLGGRDLY 10 Unmodified _RSSLGGRDLY_ 0 0 0 ENSG00000162664|ENST00000340281|ZNF326 ENSG00000162664|ENST00000340281|ZNF326 ENSG00000162664|ENST00000340281|ZNF326 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.2 1122.57817 0.12382 4.6459E-05 -0.22808 -8.5575E-05 -0.10425 -3.9116E-05 375.19987194056 44.564 0.73575 44.564 44.254 44.99 0 -0.1152 -0.00029801 NaN 35.996 40 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5411400 39551 5351 26480 26496 0.021784582151667564 RSSPFCCFV 9 Unmodified _RSSPFCCFV_ 0 0 0 REV__ENST00000524339.5_1_8:82626874-82630434:-|nuORF REV__ENST00000524339.5_1_8:82626874-82630434:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.69970703125 2 523.23333 1044.45211 -0.16854 -8.8188E-05 -1.0862 -0.00056833 -1.2547 -0.00065652 523.2331567865302 100.94 1.4966 96.778 95.975 97.471 -4.1594 90 42 3 0 0 0 0.48644 2 19836 19836;19889 20.454 0.039092 1 9221800 + 39552 22626 26481 26497 38863;38864 38863 -0.06834087886159068 RSSPFCCFV 9 Unmodified _RSSPFCCFV_ 0 0 0 REV__ENST00000524339.5_1_8:82626874-82630434:-|nuORF REV__ENST00000524339.5_1_8:82626874-82630434:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6889038085938 2 523.23333 1044.45211 -0.29445 -0.00015406 -1.6825 -0.00088037 -1.977 -0.0010344 523.2327315567256 101.07 1.4699 96.773 95.954 97.424 -4.297 99 42 4 0 0 0 0.48644 3 19312 19312;19347;19447 20.454 3.5113 1 13067000 + 39553 22626 26481 26497 38865;38866;38867 38865 -0.06834087886159068 RSSPFWRTWRW 11 Unmodified _RSSPFWRTWRW_ 0 0 0 ENST00000371538.4_1_1:53158470-53163973:-|nuORF ENST00000371538.4_1_1:53158470-53163973:-|nuORF ENST00000371538.4_1_1:53158470-53163973:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2666625976562 3 522.26886 1563.78475 NaN NaN NaN NaN NaN NaN NaN 18.907 1 17.272 16.772 17.772 -1.6351 0 0 0 0.22632 1 2824 2824 0.50596 0 1 39554 9162 26482 26498 38868 38868 0.025408708341046804 RSSPPGHYY 9 Unmodified _RSSPPGHYY_ 0 0 0 ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1;OCIAD1|p.E233Kfs*4|2|0.22|ENSG00000109180|chr4:48857355-48857355|A/-|frameshift_variant;ENSG00000109180|ENST00000264312|OCIAD1 ENST00000512981.5_1_4:48833247-48854006:+|nuORF ENST00000512981.5_1_4:48833247-48854006:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2714233398438 2 532.251423 1062.48829 0.10408 5.5399E-05 -0.37589 -0.00020007 -0.27181 -0.00014467 532.2512901652684 22.892 1.0801 22.892 22.329 23.409 0 74 30 3 0 0 0 0.58804 1 3922 3922 13.906 6.6168 1 4736400 39555 2520 26483 26499 38869 38869 -0.04045171393408964 RSSPPGHYY 9 Unmodified _RSSPPGHYY_ 0 0 0 ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1;OCIAD1|p.E233Kfs*4|2|0.22|ENSG00000109180|chr4:48857355-48857355|A/-|frameshift_variant;ENSG00000109180|ENST00000264312|OCIAD1 ENST00000512981.5_1_4:48833247-48854006:+|nuORF ENST00000512981.5_1_4:48833247-48854006:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2736206054688 2 532.251423 1062.48829 -0.16169 -8.6058E-05 -0.020014 -1.0653E-05 -0.1817 -9.6711E-05 532.2512869249642 24.74 1.5507 22.886 22.155 23.706 -1.8534 105 44 3 0 0 0 0.44932 1 4064 4064 22.736 7.898 1 4498300 39556 2520 26483 26499 38870 38870 -0.04045171393408964 RSSPPGHYY 9 Unmodified _RSSPPGHYY_ 0 0 0 ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1;OCIAD1|p.E233Kfs*4|2|0.22|ENSG00000109180|chr4:48857355-48857355|A/-|frameshift_variant;ENSG00000109180|ENST00000264312|OCIAD1 ENST00000512981.5_1_4:48833247-48854006:+|nuORF ENST00000512981.5_1_4:48833247-48854006:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.251423 1062.48829 0.39044 0.00020781 -0.57928 -0.00030832 -0.18884 -0.00010051 532.2510018587656 24.522 1.4537 22.988 22.47 23.924 -1.5342 0.029248 3.6565E-05 NaN 22.736 109 41 4 NaN NaN NaN NaN 0 NaN NaN 0 5856300 39557 2520 26483 26499 -0.04045171393408964 RSSRGGGI 8 Unmodified _RSSRGGGI_ 0 0 0 ENST00000340738.9_2_14:73711373-73716709:+|nuORF ENST00000340738.9_2_14:73711373-73716709:+|nuORF ENST00000340738.9_2_14:73711373-73716709:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 395.2431640625 2 395.219926 788.425299 NaN NaN NaN NaN NaN NaN NaN 178.02 1 173.11 172.61 173.61 -4.9088 0 0 0 0.21486 1 35511 35511 2.3027 0 1 39558 8853 26484 26500 38871 38871 0.02262307609214531 RSTTKLKL 8 Unmodified _RSTTKLKL_ 0 0 0 REV__ENST00000261880.9_1_15:67494793-67494964:-|nuORF REV__ENST00000261880.9_1_15:67494793-67494964:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1600341796875 3 316.206315 945.597115 NaN NaN NaN NaN NaN NaN NaN 44.827 1 42.061 41.561 42.561 -2.7661 0 0 0 0.21486 1 8126 8126 1.4819 0 1 + 39559 20192 26485 26501 38872 38872 0.122140395768497 RSTWRRKWAWR 11 Unmodified _RSTWRRKWAWR_ 0 0 0 REV__SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant REV__SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 530.2960815429688 3 530.29552 1587.86473 NaN NaN NaN NaN NaN NaN NaN 169.14 1 164.21 163.71 164.71 -4.9295 0 0 0 0.22632 1 33380 33380 0.50596 0 1 + 39560 24605 26486 26502 38873 38873 0.09431357227981607 RSVDREILSRY 11 Unmodified _RSVDREILSRY_ 0 0 0 REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17 REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2515563964844 3 465.256397 1392.74736 NaN NaN NaN NaN NaN NaN NaN 54.64 1 51.502 51.002 52.002 -3.1377 0 0 0 0.22632 1 10119 10119 4.6037 1.5315 1 + 39561 14953 26487 26503 38874 38874 0.06669734777847225 RSVFAALDT 9 Unmodified _RSVFAALDT_ 0 0 0 KCNK10|p.K492Rfs*13|1|0.12|ENSG00000100433|chr14:88185677-88185677|T/-|frameshift_variant;nc|ENSG00000100433|P57789|KCNK10;nc|ENSG00000100433|P57789-4|KCNK10;ENSG00000100433|ENST00000319231|KCNK10 KCNK10|p.K492Rfs*13|1|0.12|ENSG00000100433|chr14:88185677-88185677|T/-|frameshift_variant KCNK10|p.K492Rfs*13|1|0.12|ENSG00000100433|chr14:88185677-88185677|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2686462402344 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 81.146 1 77.307 76.807 77.807 -3.8392 0 0 0 0.19652 1 15403 15403 0.40827 0.34428 1 39562 1979 26488 26504 38875 38875 0.023328834091330464 RSVKNYVNFWE 11 Unmodified _RSVKNYVNFWE_ 0 0 0 REV__ENST00000493961.5_1_10:72642146-72645644:-|nuORF REV__ENST00000493961.5_1_10:72642146-72645644:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24432373046875 3 481.245609 1440.715 NaN NaN NaN NaN NaN NaN NaN 26.855 1 25.221 24.721 25.721 -1.6347 0 0 0 0.22632 1 4467 4467 0.172 0 1 + 39563 22358 26489 26505 38876 38876 0.012269473748574455 RSVKNYVNFWE 11 Unmodified _RSVKNYVNFWE_ 0 0 0 REV__ENST00000493961.5_1_10:72642146-72645644:-|nuORF REV__ENST00000493961.5_1_10:72642146-72645644:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2447814941406 3 481.245609 1440.715 NaN NaN NaN NaN NaN NaN NaN 95.542 1 91.351 90.851 91.851 -4.1911 0 0 0 0.22632 1 18234 18234 0.026206 0 1 + 39564 22358 26489 26505 38877 38877 0.012269473748574455 RSVPICSGP 9 Unmodified _RSVPICSGP_ 0 0 0 REV__ENST00000537236.2_1_12:110006587-110011320:-|nuORF REV__ENST00000537236.2_1_12:110006587-110011320:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2362976074219 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 94.357 1 94.357 93.857 94.857 0 0 0 0 0.23508 1 18477 18477 6.7232 0.96273 1 + 39565 22821 26490 26506 38878 38878 0.003732718485366604 RSVRRRYRRWR 11 Unmodified _RSVRRRYRRWR_ 0 0 0 ENST00000488071.1_1_11:64494766-64496427:-|nuORF;ENST00000421556.5_1_11:64494482-64496427:-|nuORF;ENST00000464324.5_1_11:64494482-64496427:-|nuORF ENST00000488071.1_1_11:64494766-64496427:-|nuORF ENST00000488071.1_1_11:64494766-64496427:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 549.5350341796875 3 549.661085 1645.96143 NaN NaN NaN NaN NaN NaN NaN 161.81 1 156.62 156.12 157.12 -5.1878 0 0 0 0.22632 1 31408 31408 0 0 1 39566 9670 26491 26507 38879 38879 0.16428344507767179 RSWHQFWSRPP 11 Unmodified _RSWHQFWSRPP_ 0 0 0 REV__ENST00000301021.7_1_16:88928025-88928253:+|nuORF REV__ENST00000301021.7_1_16:88928025-88928253:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3700561523438 2 742.370727 1482.7269 NaN NaN NaN NaN NaN NaN NaN 142.65 1 142.65 142.15 143.15 0 0 0 0 0.23698 1 28446 28446 2.4985 0.21571 1 + 39567 20405 26492 26508 38880 38880 0.004846089086868233 RSWHQFWSRPP 11 Unmodified _RSWHQFWSRPP_ 0 0 0 REV__ENST00000301021.7_1_16:88928025-88928253:+|nuORF REV__ENST00000301021.7_1_16:88928025-88928253:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3724365234375 2 742.370727 1482.7269 NaN NaN NaN NaN NaN NaN NaN 151.56 1 146.33 145.83 146.83 -5.2365 0 0 0 0.23698 1 29377 29377 2.4985 1.0166 1 + 39568 20405 26492 26508 38881 38881 0.004846089086868233 RSWRHLVKRQR 11 Unmodified _RSWRHLVKRQR_ 0 0 0 ENST00000484153.1_1_1:11826815-11837330:+|nuORF;ENSG00000215910|ENST00000688073|C1orf167;nc|nan|Q5SNV9-2|C1orf167;nc|nan|Q5SNV9-3|C1orf167 ENST00000484153.1_1_1:11826815-11837330:+|nuORF ENST00000484153.1_1_1:11826815-11837330:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2176208496094 4 381.230097 1520.89128 0.343 0.00013076 1.0871 0.00041444 1.4301 0.00054521 381.4812755051014 29.895 0.455 28.003 27.752 28.207 -1.8928 14 12 2 0 0 0 0.66106 1 5077 5077 0.026206 0 1 456330 39569 7754 26493 26509 38882 38882 0.15167046119290717 RSYALESM 8 Unmodified _RSYALESM_ 0 0 0 ENST00000483359.5_1_20:34220503-34220581:-|nuORF ENST00000483359.5_1_20:34220503-34220581:-|nuORF ENST00000483359.5_1_20:34220503-34220581:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74371337890625 2 478.728935 955.443317 0.66963 0.00032057 0.9221 0.00044143 1.5917 0.00076201 478.72929211367074 108.66 0.55322 104.48 104.11 104.66 -4.1826 21 15 2 0 0 0 0.70344 1 20913 20913 13.906 0.39817 1 832460 39570 10412 26494 26510 38883 38883 -0.03618738250975184 RSYSIYPHG 9 Unmodified _RSYSIYPHG_ 0 0 0 CON__Q28107 CON__Q28107 CON__Q28107 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2696533203125 2 540.267073 1078.51959 0.1239 6.6937E-05 -1.0265 -0.00055458 -0.90259 -0.00048764 540.2663952552869 106.53 0.85987 102.15 101.68 102.54 -4.3764 80 24 4 0 0 0 0.11717 1 20465 20465 49.933 19.296 1 24537000 + 39571 684 26495 26511 38884 38884 -0.01652598359351032 RTAHVILRY 9 Unmodified _RTAHVILRY_ 0 0 0 ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.1824035644531 3 376.89273 1127.65636 0.13199 4.9745E-05 -0.34426 -0.00012975 -0.21227 -8.0004E-05 376.89257225369306 44.601 0.76612 44.601 44.189 44.955 0 60 21 4 0 0 0 0.04585 1 8345 8345 86.332 76.788 1 8827100 39572 5210 26496 26512 38885 38885 0.09763935591035988 RTAHVILRY 9 Unmodified _RTAHVILRY_ 0 0 0 ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 376.89273 1127.65636 -0.28696 -0.00010815 -0.02105 -7.9337E-06 -0.30801 -0.00011609 376.89269688708254 47.35 0.72833 44.481 44.081 44.809 -2.869 -0.0056758 -3.2937E-05 NaN 86.332 54 20 4 NaN NaN NaN NaN 0 NaN NaN 0 9496000 39573 5210 26496 26512 0.09763935591035988 RTAHVILRY 9 Unmodified _RTAHVILRY_ 0 0 0 ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 376.89273 1127.65636 0.0044248 1.6677E-06 -0.2857 -0.00010768 -0.28128 -0.00010601 376.8925822065019 47.397 0.61998 44.455 44.168 44.788 -2.9421 -0.031319 -0.00033217 NaN 86.332 55 17 5 NaN NaN NaN NaN 0 NaN NaN 0 8358000 39574 5210 26496 26512 0.09763935591035988 RTAHVILRY 9 Unmodified _RTAHVILRY_ 0 0 0 ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 376.89273 1127.65636 -0.77617 -0.00029253 0.50114 0.00018888 -0.27503 -0.00010366 376.89287365598074 47.359 0.72539 44.409 44.017 44.743 -2.9499 -0.07714 0.00055749 NaN 86.332 57 20 4 NaN NaN NaN NaN 0 NaN NaN 0 6274500 39575 5210 26496 26512 0.09763935591035988 RTAIHEVM 8 Unmodified _RTAIHEVM_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3;ENST00000476448.1_1_6:52141011-52144220:-|nuORF;nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.S549Pfs*8|1|0.36|ENSG00000166508|chr7:100095422-100095422|G/-|frameshift_variant;ENSG00000166508|ENST00000303887|MCM7 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73431396484375 2 478.752744 955.490935 0.17239 8.2531E-05 -0.4064 -0.00019456 -0.23401 -0.00011203 478.7527837075687 34.875 0.48701 32.622 32.359 32.846 -2.2527 18 13 2 0 0 0 0.97174 1 6138 6138 19.257 2.3147 1 842350 39576 2670 26497 26513 38886 38886 0.011409607398832122 RTCRPFRIS 9 Unmodified _RTCRPFRIS_ 0 0 0 REV__nc|ENSG00000005156|P49916-4|LIG3 REV__nc|ENSG00000005156|P49916-4|LIG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 379.2110595703125 3 379.209953 1134.60803 NaN NaN NaN NaN NaN NaN NaN 142.96 1 137.93 137.43 138.43 -5.0261 0 0 0 0.23508 1 27562 27562 0.96228 0 1 + 39577 13854 26498 26514 38887 38887 0.04611118679486026 RTDFNILY 8 Unmodified _RTDFNILY_ 0 0 0 MGAT5|p.K403Nfs*4|1|0.39|ENSG00000152127|chr2:134349898-134349898|A/-|frameshift_variant;ENSG00000152127|ENST00000281923|MGAT5 MGAT5|p.K403Nfs*4|1|0.39|ENSG00000152127|chr2:134349898-134349898|A/-|frameshift_variant MGAT5|p.K403Nfs*4|1|0.39|ENSG00000152127|chr2:134349898-134349898|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2569580078125 2 521.271824 1040.5291 0.20595 0.00010735 0.62031 0.00032335 0.82625 0.0004307 521.2720779900853 127.85 0.8009 127.85 127.44 128.24 0 46 22 3 0 0 0 0.47729 1 25249 25249 29.082 3.6823 1 6112600 39578 4903 26499 26515 38888 38888 0.010451699261921021 RTDIARTEY 9 Unmodified _RTDIARTEY_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.208251953125 3 375.528005 1123.56219 0.2395 8.9941E-05 -0.54473 -0.00020456 -0.30522 -0.00011462 375.5277919562965 30.394 0.56363 28.277 27.975 28.539 -2.1167 60 15 5 0 0 0 0.56124 1 5470 5470 30.703 13.261 1 48002000 39579 899 26500 26516 38889 38889 0.005347519782390009 RTDIARTEY 9 Unmodified _RTDIARTEY_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.212890625 3 375.528005 1123.56219 0.33457 0.00012564 -0.73448 -0.00027582 -0.39991 -0.00015018 375.52771889595493 30.243 0.56007 28.35 28.101 28.661 -1.8928 61 15 5 0 0 0 0.041889 2 5161 5161;5184 74.772 48.774 1 58423000 39580 899 26500 26516 38890;38891 38890 0.005347519782390009 RTDIARTEY 9 Unmodified _RTDIARTEY_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.528005 1123.56219 -0.11389 -4.2768E-05 -0.20669 -7.7618E-05 -0.32058 -0.00012039 375.5278781628308 28.286 0.48307 28.286 28.042 28.525 0 -0.019789 0.0002194 NaN 74.772 54 13 5 NaN NaN NaN NaN 0 NaN NaN 0 25660000 39581 899 26500 26516 0.005347519782390009 RTDIARTEY 9 Unmodified _RTDIARTEY_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 375.528005 1123.56219 -0.14292 -5.3671E-05 -0.13364 -5.0187E-05 -0.27657 -0.00010386 375.5279401295933 30.384 0.53038 28.31 28.04 28.571 -2.0743 0.0039767 0.00030169 NaN 74.772 60 14 5 NaN NaN NaN NaN 0 NaN NaN 0 45583000 39582 899 26500 26516 0.005347519782390009 RTDLHSTWQY 10 Unmodified _RTDLHSTWQY_ 0 0 0 ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2 ENST00000482957.1_1_20:62065100-62065586:-|nuORF ENST00000482957.1_1_20:62065100-62065586:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2225646972656 3 436.210676 1305.6102 -0.25125 -0.0001096 0.058397 2.5474E-05 -0.19285 -8.4125E-05 436.21066752145816 72.768 1.183 69.457 68.954 70.137 -3.3107 89 32 5 0 0 0 0.47576 2 14181 14153;14181 25.997 17.246 1 40616000 39583 10408 26501 26517 38892;38893 38893 -0.030381741017208697 RTDLHSTWQY 10 Unmodified _RTDLHSTWQY_ 0 0 0 ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2 ENST00000482957.1_1_20:62065100-62065586:-|nuORF ENST00000482957.1_1_20:62065100-62065586:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 436.210676 1305.6102 -0.12537 -5.4688E-05 0.017582 7.6696E-06 -0.10779 -4.7019E-05 436.21061766329655 69.155 0.87933 69.155 68.718 69.598 0 -0.17526 0.0002658 NaN 25.997 83 24 4 NaN NaN NaN NaN 0 NaN NaN 0 24672000 39584 10408 26501 26517 -0.030381741017208697 RTDLHSTWQY 10 Unmodified _RTDLHSTWQY_ 0 0 0 ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2 ENST00000482957.1_1_20:62065100-62065586:-|nuORF ENST00000482957.1_1_20:62065100-62065586:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 436.210676 1305.6102 0.21663 9.4496E-05 -0.39762 -0.00017345 -0.18099 -7.8952E-05 436.21048183843277 72.928 1.4302 69.3 68.233 69.663 -3.6275 -0.029428 -0.00027755 NaN 25.997 103 39 5 NaN NaN NaN NaN 0 NaN NaN 0 29658000 39585 10408 26501 26517 -0.030381741017208697 RTDLHSTWQY 10 Unmodified _RTDLHSTWQY_ 0 0 0 ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2 ENST00000482957.1_1_20:62065100-62065586:-|nuORF ENST00000482957.1_1_20:62065100-62065586:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 436.210676 1305.6102 0.18418 8.0339E-05 -0.40664 -0.00017738 -0.22246 -9.7039E-05 436.21045052718716 72.946 2.0171 69.407 68.295 70.312 -3.5385 0.077639 -0.00028935 NaN 25.997 118 57 4 NaN NaN NaN NaN 0 NaN NaN 0 31977000 39586 10408 26501 26517 -0.030381741017208697 RTEASQLLY 9 Unmodified _RTEASQLLY_ 0 0 0 nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-3|DOCK9 nc|ENSG00000088387|Q9BZ29-3|DOCK9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2799682617188 2 540.787838 1079.56112 0.48581 0.00026272 -0.80304 -0.00043427 -0.31722 -0.00017155 540.7873594392154 75.742 0.62031 75.742 75.442 76.063 0 39 17 3 0 0 0 0.43219 1 14682 14682 23.79 6.6769 1 8376000 39587 1730 26502 26518 38894 38894 0.024525376093379236 RTEASQLLY 9 Unmodified _RTEASQLLY_ 0 0 0 nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-3|DOCK9 nc|ENSG00000088387|Q9BZ29-3|DOCK9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2811279296875 2 540.787838 1079.56112 0.23243 0.00012569 -0.68565 -0.00037079 -0.45322 -0.0002451 540.7874715146583 79.189 0.66764 75.679 75.311 75.979 -3.5102 45 18 3 0 0 0 0.27986 1 15426 15426 32.786 12.371 1 8850400 39588 1730 26502 26518 38895 38895 0.024525376093379236 RTEASQLLY 9 Unmodified _RTEASQLLY_ 0 0 0 nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-3|DOCK9 nc|ENSG00000088387|Q9BZ29-3|DOCK9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2645874023438 2 540.787838 1079.56112 0.019327 1.0452E-05 -0.14871 -8.0423E-05 -0.12939 -6.9971E-05 540.7877331487382 79.482 0.6327 75.677 75.336 75.969 -3.8048 42 17 4 0 0 0 0.34246 1 15104 15104 40.239 16.219 1 8292000 39589 1730 26502 26518 38896 38896 0.024525376093379236 RTEASQLLY 9 Unmodified _RTEASQLLY_ 0 0 0 nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-3|DOCK9 nc|ENSG00000088387|Q9BZ29-3|DOCK9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2635498046875 2 540.787838 1079.56112 0.0026636 1.4404E-06 -0.31446 -0.00017006 -0.31179 -0.00016861 540.7876085727518 79.352 0.63646 75.676 75.339 75.975 -3.676 46 17 4 0 0 0 0.80264 1 15056 15056 17.113 0 1 10709000 39590 1730 26502 26518 38897 38897 0.024525376093379236 RTECFQRFLLR 11 Unmodified _RTECFQRFLLR_ 0 0 0 REV__GRK5|p.F167Lfs*15|1|0.14|ENSG00000198873|chr10:119425048-119425048|T/-|frameshift_variant REV__GRK5|p.F167Lfs*15|1|0.14|ENSG00000198873|chr10:119425048-119425048|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.268798828125 3 490.266239 1467.77689 NaN NaN NaN NaN NaN NaN NaN 78.485 1 75.022 74.522 75.522 -3.4633 0 0 0 0.22632 1 15324 15324 0.094841 0.068635 1 + 39591 19468 26503 26519 38898 38898 0.06170975522331901 RTEDELSKY 9 Unmodified _RTEDELSKY_ 0 0 0 CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant;ENSG00000165813|ENST00000369287|CCDC186 CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2160339355469 3 380.855899 1139.54587 -0.12075 -4.599E-05 0.58025 0.00022099 0.4595 0.000175 380.85614986224186 32.417 0.41997 32.417 32.082 32.502 0 13 11 2 0 0 0 0.70121 1 5886 5886 6.1918 3.9091 1 565910 39592 419 26504 26520 38899 38899 -0.018323739785273574 RTEDELSKY 9 Unmodified _RTEDELSKY_ 0 0 0 CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant;ENSG00000165813|ENST00000369287|CCDC186 CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.855899 1139.54587 0.18709 7.1256E-05 0.48049 0.000183 0.66758 0.00025425 380.8561023326741 34.458 0.34341 32.206 32.083 32.427 -2.2527 -0.10867 -0.00014289 NaN 6.1918 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 586470 39593 419 26504 26520 -0.018323739785273574 RTEDNLQIY 9 Unmodified _RTEDNLQIY_ 0 0 0 ENSG00000007968|ENST00000361729|E2F2 ENSG00000007968|ENST00000361729|E2F2 ENSG00000007968|ENST00000361729|E2F2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3209838867188 2 576.288202 1150.56185 0.047866 2.7585E-05 0.86661 0.00049942 0.91448 0.000527 576.289077198352 78.031 0.84589 74.372 73.954 74.8 -3.6588 49 22 3 0 0 0 0.10537 1 14869 14869 54.068 46.591 1 5983200 39594 1033 26505 26521 38900 38900 -0.007406677416156526 RTEEGPTLSY 10 Unmodified _RTEEGPTLSY_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.312744140625 2 576.78021 1151.54587 -0.015051 -8.6814E-06 -0.15118 -8.7196E-05 -0.16623 -9.5877E-05 576.7801389115185 62.022 0.92315 62.022 61.631 62.554 0 98 26 5 0 0 0 0.074754 1 11875 11875 84.522 38.823 1 169230000 39595 1111 26506 26522 38901 38901 -0.023843739784979334 RTEEGPTLSY 10 Unmodified _RTEEGPTLSY_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3374633789062 2 576.78021 1151.54587 0.043178 2.4904E-05 -0.010617 -6.1237E-06 0.032561 1.878E-05 576.7802477464925 65.24 0.84439 62.193 61.799 62.644 -3.047 97 24 5 0 0 0 0.24786 1 12650 12650 71.708 33.093 1 199400000 39596 1111 26506 26522 38902 38902 -0.023843739784979334 RTEEGPTLSY 10 Unmodified _RTEEGPTLSY_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3349609375 2 576.78021 1151.54587 0.35936 0.00020727 -0.37007 -0.00021345 -0.010706 -6.1752E-06 576.780047608089 65.651 0.8785 62.193 61.787 62.665 -3.4581 94 24 5 0 0 0 0.14044 1 12258 12258 84.522 30.689 1 127970000 39597 1111 26506 26522 38903 38903 -0.023843739784979334 RTEEGPTLSY 10 Unmodified _RTEEGPTLSY_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3341674804688 2 576.78021 1151.54587 0.31405 0.00018114 -0.31647 -0.00018253 -0.0024185 -1.395E-06 576.7800833362869 65.385 1.269 62.102 61.692 62.961 -3.2832 110 36 5 0 0 0 0.27395 1 12306 12306 78.06 38.111 1 151650000 39598 1111 26506 26522 38904 38904 -0.023843739784979334 RTEPINTTY 9 Unmodified _RTEPINTTY_ 0 0 0 ENSG00000163257|ENST00000382247|DCAF16 ENSG00000163257|ENST00000382247|DCAF16 ENSG00000163257|ENST00000382247|DCAF16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7780151367188 2 547.77747 1093.54039 0.61754 0.00033828 -0.95029 -0.00052055 -0.33275 -0.00018227 547.7770267083522 44.755 0.49612 44.755 44.459 44.955 0 27 13 3 0 0 0 0.24263 2 8388 8388;8436 34.932 7.3033 1 3010900 39599 5412 26507 26523 38905;38906 38905 -0.0026405277033063612 RTEPINTTY 9 Unmodified _RTEPINTTY_ 0 0 0 ENSG00000163257|ENST00000382247|DCAF16 ENSG00000163257|ENST00000382247|DCAF16 ENSG00000163257|ENST00000382247|DCAF16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7778930664062 2 547.77747 1093.54039 0.12355 6.7676E-05 -0.15275 -8.3674E-05 -0.029205 -1.5998E-05 547.7774307649589 47.673 0.59595 44.804 44.567 45.163 -2.869 34 16 3 0 0 0 0.16539 2 8989 8989;9030 41.956 11.319 1 4432200 39600 5412 26507 26523 38907;38908 38907 -0.0026405277033063612 RTEPINTTY 9 Unmodified _RTEPINTTY_ 0 0 0 ENSG00000163257|ENST00000382247|DCAF16 ENSG00000163257|ENST00000382247|DCAF16 ENSG00000163257|ENST00000382247|DCAF16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7784423828125 2 547.77747 1093.54039 0.033225 1.82E-05 -0.03903 -2.138E-05 -0.0058054 -3.1801E-06 547.7774230985618 47.788 0.56482 44.846 44.579 45.144 -2.9421 38 15 3 0 0 0 0.24263 1 8693 8693 34.932 7.3033 1 4540900 39601 5412 26507 26523 38909 38909 -0.0026405277033063612 RTEPINTTY 9 Unmodified _RTEPINTTY_ 0 0 0 ENSG00000163257|ENST00000382247|DCAF16 ENSG00000163257|ENST00000382247|DCAF16 ENSG00000163257|ENST00000382247|DCAF16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7777099609375 2 547.77747 1093.54039 -0.01267 -6.9406E-06 0.0057715 3.1615E-06 -0.0068989 -3.7791E-06 547.7775190347561 47.807 0.62256 44.858 44.568 45.19 -2.9499 38 17 3 0 0 0 0.16539 4 8757 8703;8707;8755;8757 41.956 22.493 1 3139500 39602 5412 26507 26523 38910;38911;38912;38913 38913 -0.0026405277033063612 RTERKLMHQKR 11 Unmodified _RTERKLMHQKR_ 0 0 0 ENST00000395159.6_2_14:58878688-58893913:-|nuORF;ENST00000555097.1_2_14:58878632-58893853:-|nuORF ENST00000395159.6_2_14:58878688-58893913:-|nuORF ENST00000395159.6_2_14:58878688-58893913:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3959350585938 2 741.925343 1481.83613 NaN NaN NaN NaN NaN NaN NaN 161.86 1 156.68 156.18 157.18 -5.1878 0 0 0 0.23698 1 31419 31419 2.2828 0.95324 1 39603 9426 26508 26524 38914 38914 0.1144887153648142 RTEYTITMY 9 Unmodified _RTEYTITMY_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000579249.1_1_17:62145505-62149428:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2485961914062 2 589.281531 1176.54851 0.50598 0.00029816 -0.1063 -6.2641E-05 0.39968 0.00023552 589.2814900272905 105.31 0.77003 100.94 100.49 101.26 -4.3764 49 21 3 0 0 0 0.35429 1 20223 20223 28.495 6.9575 1 7190400 39604 6585 26509 26525 38915 38915 -0.032702418452117854 RTEYTITMY 9 Unmodified _RTEYTITMY_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000579249.1_1_17:62145505-62149428:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 589.281531 1176.54851 0.73279 0.00043182 -0.40912 -0.00024109 0.32367 0.00019073 589.2813409751623 100.87 0.74346 100.87 100.41 101.15 0 -0.064995 -0.00019143 NaN 28.495 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 7979300 39605 6585 26509 26525 -0.032702418452117854 RTEYTITMY 9 Unmodified _RTEYTITMY_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000579249.1_1_17:62145505-62149428:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 589.281531 1176.54851 0.16751 9.8713E-05 0.047161 2.7791E-05 0.21467 0.0001265 589.2816375312035 105.27 0.66954 101 100.64 101.31 -4.2638 0.067337 0.00034633 NaN 28.495 64 18 4 NaN NaN NaN NaN 0 NaN NaN 0 6992100 39606 6585 26509 26525 -0.032702418452117854 RTEYTITMY 9 Unmodified _RTEYTITMY_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000579249.1_1_17:62145505-62149428:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 589.281531 1176.54851 0.7646 0.00045056 -0.5011 -0.00029529 0.2635 0.00015527 589.2813466358642 104.99 0.70825 100.94 100.58 101.29 -4.0543 -0.0011749 -0.00029983 NaN 28.495 51 19 3 NaN NaN NaN NaN 0 NaN NaN 0 5442600 39607 6585 26509 26525 -0.032702418452117854 RTFEKIEEV 9 Unmodified _RTFEKIEEV_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3367919921875 2 575.808771 1149.60299 0.053338 3.0712E-05 -0.14065 -8.0985E-05 -0.087307 -5.0272E-05 575.8086456647694 57.488 0.97359 57.488 56.986 57.96 0 82 27 4 0 0 0 0.088942 2 10960 10960;11019 59.368 7.7386 1 13459000 39608 2312 26510 26526 38916;38917 38916 0.03417093297844076 RTFEKIEEV 9 Unmodified _RTFEKIEEV_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3367309570312 2 575.808771 1149.60299 -0.0079783 -4.594E-06 0.038272 2.2037E-05 0.030294 1.7443E-05 575.8087615471208 60.396 0.75755 57.463 57.065 57.822 -2.9333 61 21 4 0 0 0 0.011757 2 11621 11575;11621 100.71 34.252 1 30650000 39609 2312 26510 26526 38918;38919 38919 0.03417093297844076 RTFEKIEEV 9 Unmodified _RTFEKIEEV_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3373413085938 2 575.808771 1149.60299 0.18839 0.00010848 -0.13514 -7.7812E-05 0.053257 3.0666E-05 575.8086547387334 60.741 0.73204 57.427 57.05 57.782 -3.3139 60 20 4 0 0 0 0.01743 2 11323 11280;11323 94.909 41.828 1 27319000 39610 2312 26510 26526 38920;38921 38921 0.03417093297844076 RTFEKIEEV 9 Unmodified _RTFEKIEEV_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 385.19671630859375 3 384.208273 1149.60299 0.087302 3.3542E-05 -0.23304 -8.9538E-05 -0.14574 -5.5995E-05 384.2081553383732 60.728 0.76681 57.414 57.05 57.817 -3.3139 80 21 5 0 0 0 0.048054 1 11298 11298 89.193 60.112 1 33595000 39611 2312 26510 26526 38922 38922 0.03417093297844076 RTFEKIEEV 9 Unmodified _RTFEKIEEV_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 385.2201232910156 3 384.208273 1149.60299 -0.49995 -0.00019208 0.40354 0.00015505 -0.096401 -3.7038E-05 384.20840822497155 60.624 0.80885 57.4 56.994 57.803 -3.2237 73 22 4 0 0 0 0.028324 1 11331 11331 97.138 58.962 1 33083000 39612 2312 26510 26526 38923 38923 0.03417093297844076 RTFEKIEEV 9 Unmodified _RTFEKIEEV_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3209838867188 2 575.808771 1149.60299 0.1694 9.7543E-05 -0.060512 -3.4843E-05 0.10889 6.27E-05 575.8086878719117 60.613 0.80963 57.389 57.029 57.839 -3.2237 64 22 4 0 0 0 0.10537 2 11377 11377;11383 36.81 28.655 1 25161000 39613 2312 26510 26526 38924;38925 38924 0.03417093297844076 RTFEKIEEV 9 Unmodified _RTFEKIEEV_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 384.208273 1149.60299 -0.35455 -0.00013622 0.22795 8.758E-05 -0.1266 -4.8642E-05 384.208314149348 57.429 1.0088 57.429 56.951 57.96 0 0.0034508 0.00013333 NaN 97.138 83 28 4 NaN NaN NaN NaN 0 NaN NaN 0 14139000 39614 2312 26510 26526 0.03417093297844076 RTFEKIEEV 9 Unmodified _RTFEKIEEV_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 384.208273 1149.60299 -0.2261 -8.687E-05 0.067088 2.5776E-05 -0.15901 -6.1094E-05 384.20826223530287 60.392 0.79199 57.459 57.065 57.857 -2.9333 0.033332 -5.2082E-05 NaN 97.138 72 22 4 NaN NaN NaN NaN 0 NaN NaN 0 41907000 39615 2312 26510 26526 0.03417093297844076 RTGLYVGY 8 Unmodified _RTGLYVGY_ 0 0 0 REV__ENST00000462722.5_1_9:131598322-131644289:-|nuORF REV__ENST00000462722.5_1_9:131598322-131644289:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2484130859375 2 464.747985 927.481417 -0.085525 -3.9748E-05 -0.33831 -0.00015723 -0.42383 -0.00019697 464.74784482513866 59.962 0.59159 57.029 56.749 57.341 -2.9333 27 16 2 0 0 0 8448 1 11519 11519 3.5871 2.7421 1 1101700 + 39616 21910 26511 26527 38926 38926 0.014775157260032756 RTHNLQILA 9 Unmodified _RTHNLQILA_ 0 0 0 REV__ENSG00000180447|ENST00000298743|GAS1 REV__ENSG00000180447|ENST00000298743|GAS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2702026367188 2 533.311815 1064.60908 -0.63811 -0.00034031 1.0205 0.00054426 0.38242 0.00020395 533.3122921223155 21.6 0.45359 19.878 19.667 20.121 -1.7211 27 12 3 0 0 0 0.5428 1 3400 3400 4.897 0 1 3420500 + 39617 18689 26512 26528 38927 38927 0.07935656320069029 RTHVFRPKY 9 Unmodified _RTHVFRPKY_ 0 0 0 REV__ENST00000521946.5_1_8:70505207-70554528:+|nuORF REV__ENST00000521946.5_1_8:70505207-70554528:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.27880859375 2 602.340907 1202.66726 NaN NaN NaN NaN NaN NaN NaN 101.18 1 96.887 96.387 97.387 -4.297 0 0 0 0.23508 1 19360 19360 4.3292 0 1 + 39618 16400 26513 26529 38928 38928 0.07403337965320134 RTIEYLEEV 9 Unmodified _RTIEYLEEV_ 0 0 0 ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3187866210938 2 576.300778 1150.587 0.46212 0.00026632 -0.49555 -0.00028559 -0.033438 -1.927E-05 576.3004578233695 107.71 0.87169 107.71 107.3 108.18 0 74 24 4 0 0 0 0.0071415 3 21180 21128;21180;21267 110.67 28.145 1 20386000 39619 1672 26514 26530 38929;38930;38931 38930 0.01773387060939058 RTIEYLEEV 9 Unmodified _RTIEYLEEV_ 0 0 0 ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3180541992188 2 576.300778 1150.587 -0.22351 -0.00012881 0.031426 1.8111E-05 -0.19208 -0.0001107 576.3007373265626 112.04 0.86816 107.62 107.27 108.14 -4.4231 71 24 4 0 0 0 0.028103 1 22062 22062 99.755 26.787 1 22645000 39620 1672 26514 26530 38932 38932 0.01773387060939058 RTIEYLEEV 9 Unmodified _RTIEYLEEV_ 0 0 0 ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3180541992188 2 576.300778 1150.587 0.072808 4.1959E-05 -0.13924 -8.0243E-05 -0.06643 -3.8283E-05 576.3006142082329 112.11 0.80363 107.59 107.2 108.01 -4.5259 59 22 3 0 0 0 0.012534 3 21517 21473;21480;21517 99.755 40.777 1 18764000 39621 1672 26514 26530 38933;38934;38935 38935 0.01773387060939058 RTIEYLEEV 9 Unmodified _RTIEYLEEV_ 0 0 0 ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3203125 2 576.300778 1150.587 0.60769 0.00035021 -0.82484 -0.00047536 -0.21715 -0.00012514 576.300278405549 111.88 0.87664 107.65 107.18 108.06 -4.2289 74 24 4 0 0 0 0.076959 1 21513 21513 67.187 60.7 1 19679000 39622 1672 26514 26530 38936 38936 0.01773387060939058 RTKTYYFIKNK 11 Unmodified _RTKTYYFIKNK_ 0 0 0 REV__tr|U7T2P7|U7T2P7_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00524PE=4SV=1 REV__tr|U7T2P7|U7T2P7_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00524PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 731.0701904296875 2 731.414269 1460.81398 NaN NaN NaN NaN NaN NaN NaN 175.03 1 170.24 169.74 170.74 -4.7898 0 0 0 0.22632 1 35777 35777 2.1236 2.0126 1 + 39623 25338 26515 26531 38937 38937 0.10200970339724336 RTKWRRQTA 9 Unmodified _RTKWRRQTA_ 0 0 0 ENSG00000164438|ENST00000296921|TLX3;ENSG00000107807|ENST00000370196|TLX1;ENSG00000115297|ENST00000233638|TLX2 ENSG00000164438|ENST00000296921|TLX3;ENSG00000115297|ENST00000233638|TLX2 ENSG00000164438|ENST00000296921|TLX3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2921752929688 2 601.846887 1201.67922 NaN NaN NaN NaN NaN NaN NaN 9.5228 1 8.7285 8.2285 9.2285 -0.79424 0 0 0 0.23508 1 1106 1106 0.52476 0.066424 1 39624 5545;2843 26516 26532 38938 38938 0.08644954708483965 RTLEQFLDK 9 Unmodified _RTLEQFLDK_ 0 0 0 REV__nc|ENSG00000198055|P43250-2|GRK6 REV__nc|ENSG00000198055|P43250-2|GRK6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3191528320312 2 575.316763 1148.61897 -0.25664 -0.00014765 -1.042 -0.00059948 -1.2986 -0.00074712 575.316076608333 112.14 0.63189 107.72 107.34 107.97 -4.4231 42 17 3 0 0 0 0.15889 3 22109 22059;22109;22122 32.616 29.985 1 11420000 + 39625 24233 26517 26533 38939;38940;38941 38940 0.05060799534749094 RTLLKALN 8 Unmodified _RTLLKALN_ 0 0 0 REV__FARSB|p.I364Nfs*7|1|0.04|ENSG00000116120|chr2:222624353-222624354|-/AACACTCCTTATTG|frameshift_variant REV__FARSB|p.I364Nfs*7|1|0.04|ENSG00000116120|chr2:222624353-222624354|-/AACACTCCTTATTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.164794921875 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 124.66 1 124.66 124.16 125.16 0 0 0 0 0.2396 1 24584 24584 0.30703 0 1 + 39626 15469 26518 26534 38942 38942 0.11986056922398802 RTLPNNDFF 9 Unmodified _RTLPNNDFF_ 0 0 0 ENST00000448093.5_2_6:30028682-30028808:-|nuORF;ENST00000420251.5_1_6:30028682-30028930:-|nuORF ENST00000448093.5_2_6:30028682-30028808:-|nuORF ENST00000448093.5_2_6:30028682-30028808:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.1708984375 3 375.189212 1122.54581 -0.18461 -6.9265E-05 -0.040886 -1.534E-05 -0.2255 -8.4605E-05 375.1891748838695 53.767 1.4495 53.767 53.317 54.766 0 156 40 7 0 0 0 0.60489 1 10270 10270 2.4985 2.2916 1 109910000 39627 9656 26519 26535 38943 38943 -0.010563291878725067 RTMAPNDRRYV 11 Unmodified _RTMAPNDRRYV_ 0 0 0 REV__ENST00000506579.5_1_5:140058520-140070889:-|nuORF REV__ENST00000506579.5_1_5:140058520-140070889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2387390136719 3 460.23846 1377.69355 NaN NaN NaN NaN NaN NaN NaN 72.855 1 69.545 69.045 70.045 -3.3107 0 0 0 0.22632 1 14201 14201 0.65807 0.072754 1 + 39628 18161 26520 26536 38944 38944 0.019812390744618824 RTMASFFFFKP 11 Unmodified _RTMASFFFFKP_ 0 0 0 ENST00000345496.6_1_21:46191109-46191217:-|nuORF ENST00000345496.6_1_21:46191109-46191217:-|nuORF ENST00000345496.6_1_21:46191109-46191217:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2386474609375 3 460.237398 1377.69036 NaN NaN NaN NaN NaN NaN NaN 66.691 1 66.691 66.191 67.191 0 0 0 0 0.22632 1 12884 12884 0.58532 0 1 39629 8906 26521 26537 38945 38945 0.016625959677639912 RTMASKIL 8 Unmodified _RTMASKIL_ 0 0 0 REV__ENSG00000257987|ENST00000548380|TEX49 REV__ENSG00000257987|ENST00000548380|TEX49 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2384338378906 2 460.273312 918.532072 NaN NaN NaN NaN NaN NaN NaN 89.994 1 89.994 89.494 90.494 0 0 0 0 0.21486 1 17578 17578 12.532 0.89125 1 + 39630 19873 26522 26538 38946 38946 0.06954721779345618 RTMASKIL 8 Unmodified _RTMASKIL_ 0 0 0 REV__ENSG00000257987|ENST00000548380|TEX49 REV__ENSG00000257987|ENST00000548380|TEX49 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24322509765625 2 460.273312 918.532072 NaN NaN NaN NaN NaN NaN NaN 87.655 1 83.66 83.16 84.16 -3.9953 0 0 0 0.23915 1 16695 16695 0.063987 0 1 + 39631 19873 26522 26538 38947 38947 0.06954721779345618 RTMASKIL 8 Unmodified _RTMASKIL_ 0 0 0 REV__ENSG00000257987|ENST00000548380|TEX49 REV__ENSG00000257987|ENST00000548380|TEX49 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2483825683594 2 460.273312 918.532072 NaN NaN NaN NaN NaN NaN NaN 88.498 1 84.748 84.248 85.248 -3.7501 0 0 0 0.21486 1 16940 16940 6.7232 0.96273 1 + 39632 19873 26522 26538 38948 38948 0.06954721779345618 RTPSDVKEL 9 Unmodified _RTPSDVKEL_ 0 0 0 ENSG00000140350|ENST00000465139|ANP32A;ENST00000560832.1_1_15:35529508-35529652:+|nuORF;ENSG00000139223|ENST00000266594|ANP32D;ENST00000495420.5_1_15:69079601-69113141:-|nuORF ENSG00000140350|ENST00000465139|ANP32A ENSG00000140350|ENST00000465139|ANP32A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.28173828125 2 522.787838 1043.56112 0.21849 0.00011422 -0.51965 -0.00027167 -0.30116 -0.00015744 522.787543869514 30.876 0.65885 30.876 30.591 31.25 0 53 18 4 0 0 0 0.30909 1 5537 5537 28.495 0 1 33982000 39633 4292 26523 26539 38949 38949 0.04108537609317864 RTPSDVKEL 9 Unmodified _RTPSDVKEL_ 0 0 0 ENSG00000140350|ENST00000465139|ANP32A;ENST00000560832.1_1_15:35529508-35529652:+|nuORF;ENSG00000139223|ENST00000266594|ANP32D;ENST00000495420.5_1_15:69079601-69113141:-|nuORF ENSG00000140350|ENST00000465139|ANP32A ENSG00000140350|ENST00000465139|ANP32A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2669677734375 2 522.787838 1043.56112 -0.14537 -7.5997E-05 -0.24776 -0.00012952 -0.39313 -0.00020552 522.7876956755539 33.084 0.65872 30.803 30.492 31.15 -2.2813 57 18 4 0 0 0 0.035659 1 6016 6016 74.2 7.743 1 37775000 39634 4292 26523 26539 38950 38950 0.04108537609317864 RTPSDVKEL 9 Unmodified _RTPSDVKEL_ 0 0 0 ENSG00000140350|ENST00000465139|ANP32A;ENST00000560832.1_1_15:35529508-35529652:+|nuORF;ENSG00000139223|ENST00000266594|ANP32D;ENST00000495420.5_1_15:69079601-69113141:-|nuORF ENSG00000140350|ENST00000465139|ANP32A ENSG00000140350|ENST00000465139|ANP32A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2584838867188 2 522.787838 1043.56112 -0.40279 -0.00021057 0.030296 1.5838E-05 -0.37249 -0.00019473 522.7878629317506 32.958 0.73503 30.811 30.487 31.222 -2.1468 69 20 5 0 0 0 0.0002876 1 5729 5729 128.58 9.6839 1 58350000 39635 4292 26523 26539 38951 38951 0.04108537609317864 RTPSDVKEL 9 Unmodified _RTPSDVKEL_ 0 0 0 ENSG00000140350|ENST00000465139|ANP32A;ENST00000560832.1_1_15:35529508-35529652:+|nuORF;ENSG00000139223|ENST00000266594|ANP32D;ENST00000495420.5_1_15:69079601-69113141:-|nuORF ENSG00000140350|ENST00000465139|ANP32A ENSG00000140350|ENST00000465139|ANP32A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2813720703125 2 522.787838 1043.56112 0.47611 0.00024891 -0.78678 -0.00041132 -0.31066 -0.00016241 522.7874120071847 33.04 0.82854 30.824 30.455 31.283 -2.2158 72 23 4 0 0 0 0.00086817 1 5731 5731 135.86 28.676 1 47458000 39636 4292 26523 26539 38952 38952 0.04108537609317864 RTQPPTQPP 9 Unmodified _RTQPPTQPP_ 0 0 0 REV__ENSG00000069696|ENST00000176183|DRD4 REV__ENSG00000069696|ENST00000176183|DRD4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 341.158447265625 3 341.185691 1020.53524 NaN NaN NaN NaN NaN NaN NaN 91.798 1 87.703 87.203 88.203 -4.0946 0 0 0 0.23508 1 17483 17483 1.1933 0 1 + 39637 14244 26524 26540 38953 38953 0.025796881576980013 RTRNRRRRRDW 11 Unmodified _RTRNRRRRRDW_ 0 0 0 ENST00000361972.8_1_10:7212945-7217999:-|nuORF ENST00000361972.8_1_10:7212945-7217999:-|nuORF ENST00000361972.8_1_10:7212945-7217999:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.783203125 3 543.312344 1626.9152 NaN NaN NaN NaN NaN NaN NaN 27.913 1 26.158 25.658 26.658 -1.7552 0 0 0 0.22632 1 4692 4692 0.094841 0.094841 1 39638 9039 26525 26541 38954 38954 0.1268227960567856 RTRQERRQRRQ 11 Unmodified _RTRQERRQRRQ_ 0 0 0 LAD1|p.G152Afs*67|1|0.17|ENSG00000159166|chr1:201386906-201386906|C/-|frameshift_variant;ENSG00000159166|ENST00000391967|LAD1 LAD1|p.G152Afs*67|1|0.17|ENSG00000159166|chr1:201386906-201386906|C/-|frameshift_variant LAD1|p.G152Afs*67|1|0.17|ENSG00000159166|chr1:201386906-201386906|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.387939453125 2 785.448894 1568.88323 NaN NaN NaN NaN NaN NaN NaN 154.22 1 148.95 148.45 149.45 -5.2669 0 0 0 0.22632 1 29902 29902 0.094841 0.094841 1 39639 5192 26526 26542 38955 38955 0.12154867131857827 RTRQPSLT 8 Unmodified _RTRQPSLT_ 0 0 0 ENST00000524571.6_1_8:12043687-12049316:-|nuORF ENST00000524571.6_1_8:12043687-12049316:-|nuORF ENST00000524571.6_1_8:12043687-12049316:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 320.1859130859375 3 320.185802 957.535577 NaN NaN NaN NaN NaN NaN NaN 97.473 1 97.473 96.973 97.973 0 0 0 0 0.21486 1 19103 19103 1.6526 0 1 39640 10884 26527 26543 38956 38956 0.055111078775553324 RTRQPSLT 8 Unmodified _RTRQPSLT_ 0 0 0 ENST00000524571.6_1_8:12043687-12049316:-|nuORF ENST00000524571.6_1_8:12043687-12049316:-|nuORF ENST00000524571.6_1_8:12043687-12049316:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.13836669921875 3 320.185802 957.535577 NaN NaN NaN NaN NaN NaN NaN 106.9 1 102.48 101.98 102.98 -4.4121 0 0 0 0.21486 1 20508 20508 1.6526 0 1 39641 10884 26527 26543 38957 38957 0.055111078775553324 RTRRRRRRRRP 11 Unmodified _RTRRRRRRRRP_ 0 0 0 REV__ENST00000276602.10_1_8:73921164-73926156:+|nuORF REV__ENST00000276602.10_1_8:73921164-73926156:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3798217773438 2 811.51778 1621.02101 NaN NaN NaN NaN NaN NaN NaN 165.89 1 165.89 165.39 166.39 0 0 0 0 0.22632 1 33722 33722 0.094841 0.094841 1 + 39642 20295 26528 26544 38958 38958 0.23533660241764665 RTRVKLSRST 10 Unmodified _RTRVKLSRST_ 0 0 0 REV__ENSG00000168476|ENST00000306306|REEP4 REV__ENSG00000168476|ENST00000306306|REEP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2886962890625 2 602.367653 1202.72075 NaN NaN NaN NaN NaN NaN NaN 68.418 1 64.881 64.381 65.381 -3.5362 0 0 0 2.8426 1 12857 12857 0.063865 0 1 + 39643 18028 26529 26545 38959 38959 0.12750090677150183 RTSDRTLLY 9 Unmodified _RTSDRTLLY_ 0 0 0 ENST00000577409.1_1_18:72183591-72185955:+|nuORF ENST00000577409.1_1_18:72183591-72185955:+|nuORF ENST00000577409.1_1_18:72183591-72185955:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.205078125 3 375.540134 1123.59857 -0.077684 -2.9174E-05 0.03576 1.3429E-05 -0.041924 -1.5744E-05 375.54008097711505 51.986 0.60369 51.986 51.79 52.394 0 25 16 2 0 0 0 0.058839 3 9880 9880;9897;9898 51.415 46.699 1 6831400 39644 11467 26530 26546 38960;38961;38962 38960 0.04171628874973976 RTSDRTLLY 9 Unmodified _RTSDRTLLY_ 0 0 0 ENST00000577409.1_1_18:72183591-72185955:+|nuORF ENST00000577409.1_1_18:72183591-72185955:+|nuORF ENST00000577409.1_1_18:72183591-72185955:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.2076721191406 3 375.540134 1123.59857 0.061896 2.3245E-05 -0.35268 -0.00013244 -0.29078 -0.0001092 375.5400229497272 54.615 0.60396 51.48 51.181 51.785 -3.1352 30 16 3 0 0 0 0.039965 3 10086 10086;10137;10138 52.268 32.906 1 11643000 39645 11467 26530 26546 38963;38964;38965 38963 0.04171628874973976 RTSDRTLLY 9 Unmodified _RTSDRTLLY_ 0 0 0 ENST00000577409.1_1_18:72183591-72185955:+|nuORF ENST00000577409.1_1_18:72183591-72185955:+|nuORF ENST00000577409.1_1_18:72183591-72185955:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2183837890625 3 375.540134 1123.59857 -0.72188 -0.00027109 0.54784 0.00020574 -0.17403 -6.5356E-05 375.54033313225915 54.597 0.66529 51.459 51.167 51.833 -3.1377 30 18 2 0 0 0 0.069179 1 10164 10164 51.415 49.723 1 8222900 39646 11467 26530 26546 38966 38966 0.04171628874973976 RTSDRTLLY 9 Unmodified _RTSDRTLLY_ 0 0 0 ENST00000577409.1_1_18:72183591-72185955:+|nuORF ENST00000577409.1_1_18:72183591-72185955:+|nuORF ENST00000577409.1_1_18:72183591-72185955:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.540134 1123.59857 -0.45817 -0.00017206 0.24528 9.2112E-05 -0.21289 -7.9948E-05 375.5402538145078 54.467 0.54602 51.583 51.36 51.906 -2.8837 0.076031 0.00010538 NaN 52.268 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 11176000 39647 11467 26530 26546 0.04171628874973976 RTSHLIVH 8 Unmodified _RTSHLIVH_ 0 0 0 ENSG00000180787|ENST00000318833|ZFP3 ENSG00000180787|ENST00000318833|ZFP3 ENSG00000180787|ENST00000318833|ZFP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78118896484375 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 148.8 1 143.74 143.24 144.24 -5.0595 0 0 0 0.2343 1 28826 28826 0.62683 0 1 39648 6693 26531 26547 38967 38967 0.06343715602804423 RTSKFKSIR 9 Unmodified _RTSKFKSIR_ 0 0 0 REV__nc|ENSG00000102755|P17948-2|FLT1 REV__nc|ENSG00000102755|P17948-2|FLT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 374.8709716796875 3 374.896252 1121.66693 NaN NaN NaN NaN NaN NaN NaN 9.7556 1 8.721 8.221 9.221 -1.0347 0 0 0 0.23508 1 1015 1015 0.26902 0 1 + 39649 23979 26532 26548 38968 38968 0.11095918245450775 RTSKFKSIR 9 Unmodified _RTSKFKSIR_ 0 0 0 REV__nc|ENSG00000102755|P17948-2|FLT1 REV__nc|ENSG00000102755|P17948-2|FLT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 374.89508056640625 3 374.896252 1121.66693 NaN NaN NaN NaN NaN NaN NaN 9.8078 1 8.7732 8.2732 9.2732 -1.0347 0 0 0 0.23508 1 1023 1023 0.26902 0 1 + 39650 23979 26532 26548 38969 38969 0.11095918245450775 RTSMNQRRLLW 11 Unmodified _RTSMNQRRLLW_ 0 0 0 REV__nc|ENSG00000125485|Q9H8H2-2|DDX31 REV__nc|ENSG00000125485|Q9H8H2-2|DDX31 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 487.290771484375 3 487.601622 1459.78304 NaN NaN NaN NaN NaN NaN NaN 162.36 1 157.17 156.67 157.67 -5.1878 0 0 0 0.22632 1 31524 31524 7.0341 1.6314 1 + 39651 24024 26533 26549 38970 38970 0.07153493753867224 RTSRWWRLRRP 11 Unmodified _RTSRWWRLRRP_ 0 0 0 REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6893310546875 3 523.971037 1568.89128 -0.029121 -1.5259E-05 2.8381 0.0014871 2.809 0.0014718 523.9732474188152 56.985 0.17548 56.985 56.882 57.057 0 7 4 2 0 0 0 0.66271 1 10879 10879 0.0072825 0 1 558740 + 39652 21139 26534 26550 38971 38971 0.12959046119294726 RTSTGIIGV 9 Unmodified _RTSTGIIGV_ 0 0 0 ENST00000543995.5_1_12:6442265-6443279:-|nuORF ENST00000543995.5_1_12:6442265-6443279:-|nuORF ENST00000543995.5_1_12:6442265-6443279:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 452.7592468261719 2 452.266542 902.51853 0.027367 1.2377E-05 0.079559 3.5982E-05 0.10693 4.8359E-05 452.26653211878653 76.589 0.54754 72.866 72.619 73.166 -3.7227 34 15 3 0 0 0 0.15889 1 14540 14540 31.728 31.728 1 2450600 39653 11104 26535 26551 38972 38972 0.06337187271753919 RTSTGIIGV 9 Unmodified _RTSTGIIGV_ 0 0 0 ENST00000543995.5_1_12:6442265-6443279:-|nuORF ENST00000543995.5_1_12:6442265-6443279:-|nuORF ENST00000543995.5_1_12:6442265-6443279:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 452.266542 902.51853 0.24677 0.00011161 -0.4592 -0.00020768 -0.21243 -9.6075E-05 452.26629172100627 73.188 1.0147 73.188 72.505 73.52 0 0.22997 -0.00041085 NaN 31.728 44 28 3 NaN NaN NaN NaN 0 NaN NaN 0 3490500 39654 11104 26535 26551 0.06337187271753919 RTSTGIIGV 9 Unmodified _RTSTGIIGV_ 0 0 0 ENST00000543995.5_1_12:6442265-6443279:-|nuORF ENST00000543995.5_1_12:6442265-6443279:-|nuORF ENST00000543995.5_1_12:6442265-6443279:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 452.266542 902.51853 -0.14387 -6.507E-05 0.24936 0.00011278 0.10549 4.7708E-05 452.2665940930394 76.289 0.63927 72.874 72.541 73.18 -3.4151 -0.084237 0.00023007 NaN 31.728 37 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3750800 39655 11104 26535 26551 0.06337187271753919 RTSTGIIGV 9 Unmodified _RTSTGIIGV_ 0 0 0 ENST00000543995.5_1_12:6442265-6443279:-|nuORF ENST00000543995.5_1_12:6442265-6443279:-|nuORF ENST00000543995.5_1_12:6442265-6443279:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 452.266542 902.51853 0.11383 5.1481E-05 0.035915 1.6243E-05 0.14974 6.7724E-05 452.26647512520924 76.538 0.56961 72.904 72.646 73.216 -3.6337 -0.053897 3.7001E-05 NaN 31.728 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2530900 39656 11104 26535 26551 0.06337187271753919 RTTETQVLV 9 Unmodified _RTTETQVLV_ 0 0 0 ENST00000509087.1_1_5:140053844-140054778:-|nuORF;nc|ENSG00000170445|P12081-3|HARS1;nc|ENSG00000170445|P12081-2|HARS1;nc|ENSG00000170445|P12081-4|HARS1;ENSG00000170445|ENST00000504156|HARS1 ENST00000509087.1_1_5:140053844-140054778:-|nuORF ENST00000509087.1_1_5:140053844-140054778:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6954345703125 2 523.795663 1045.57677 -0.23479 -0.00012298 0.39472 0.00020675 0.15993 8.377E-05 523.7957693556041 59.017 0.8083 56.107 55.683 56.491 -2.9105 40 22 2 0 0 0 0.77644 1 11299 11299 15.248 5.8654 1 1342000 39657 10725 26536 26552 38973 38973 0.05580824126354855 RTTETQVLV 9 Unmodified _RTTETQVLV_ 0 0 0 ENST00000509087.1_1_5:140053844-140054778:-|nuORF;nc|ENSG00000170445|P12081-3|HARS1;nc|ENSG00000170445|P12081-2|HARS1;nc|ENSG00000170445|P12081-4|HARS1;ENSG00000170445|ENST00000504156|HARS1 ENST00000509087.1_1_5:140053844-140054778:-|nuORF ENST00000509087.1_1_5:140053844-140054778:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.795663 1045.57677 -0.46409 -0.00024309 0.31499 0.00016499 -0.1491 -7.81E-05 523.7958481345689 59.482 0.84273 56.168 55.604 56.447 -3.3139 0.06767 0.00014554 NaN 15.248 40 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1104100 39658 10725 26536 26552 0.05580824126354855 RTTETQVLV 9 Unmodified _RTTETQVLV_ 0 0 0 ENST00000509087.1_1_5:140053844-140054778:-|nuORF;nc|ENSG00000170445|P12081-3|HARS1;nc|ENSG00000170445|P12081-2|HARS1;nc|ENSG00000170445|P12081-4|HARS1;ENSG00000170445|ENST00000504156|HARS1 ENST00000509087.1_1_5:140053844-140054778:-|nuORF ENST00000509087.1_1_5:140053844-140054778:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.795663 1045.57677 0.16749 8.7731E-05 -0.18025 -9.4415E-05 -0.012761 -6.6843E-06 523.7955733596236 59.231 0.76771 56.026 55.646 56.413 -3.2052 -0.074277 -0.00037327 NaN 15.248 34 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1190200 39659 10725 26536 26552 0.05580824126354855 RTTPKSHEFG 10 Unmodified _RTTPKSHEFG_ 0 0 0 REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.2367858886719 3 387.2 1158.57817 NaN NaN NaN NaN NaN NaN NaN 108.65 1 104.46 103.96 104.96 -4.1826 0 0 0 0.22588 1 20907 20907 3.0723 0.57378 1 + 39660 12940 26537 26553 38974 38974 0.005224582151413415 RTVCCCCGCEC 11 Unmodified _RTVCCCCGCEC_ 0 0 0 nc|ENSG00000118242|Q8N565-2|MREG;ENSG00000118242|ENST00000263268|MREG;MREG|p.A142Lfs*6|1|0.22|ENSG00000118242|chr2:215945661-215945661|C/-|frameshift_variant nc|ENSG00000118242|Q8N565-2|MREG nc|ENSG00000118242|Q8N565-2|MREG MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2557983398438 2 590.180742 1178.34693 NaN NaN NaN NaN NaN NaN NaN 144.25 1 139.58 139.08 140.08 -4.6694 0 0 0 0.23698 1 28555 28555 1.1933 0.39971 1 39661 3023 26538 26554 38975 38975 -0.2351077973239626 RTVLIVVY 8 Unmodified _RTVLIVVY_ 0 0 0 REV__GPR141|p.F230Lfs*2|2|0.37|ENSG00000187037|chr7:37741078-37741078|T/-|frameshift_variant REV__GPR141|p.F230Lfs*2|2|0.37|ENSG00000187037|chr7:37741078-37741078|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.770751953125 2 481.805303 961.596052 0.31259 0.00015061 0.054104 2.6068E-05 0.36669 0.00017667 481.8051949505252 45.143 0.42328 45.143 44.955 45.378 0 22 11 3 0 0 0 0.7545 1 8528 8528 6.3541 3.4649 1 1864200 + 39662 19073 26539 26555 38976 38976 0.11371825207936581 RTVRRTISY 9 Unmodified _RTVRRTISY_ 0 0 0 REV__ENST00000302503.7_1_11:47656279-47660267:-|nuORF REV__ENST00000302503.7_1_11:47656279-47660267:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3223876953125 2 576.335821 1150.65709 0.32196 0.00018556 3.6332 0.002094 3.9552 0.0022795 576.8396472987012 66.3 0.45678 63.017 62.824 63.281 -3.2832 13 12 2 0 0 0 0.73309 1 12462 12462 4.756 0 1 1411100 + 39663 20414 26540 26556 38977 38977 0.0877873024010114 RTWDWCWMAQ 10 Unmodified _RTWDWCWMAQ_ 0 0 0 ENSG00000253649|ENST00000647727|PRSS51;nc|ENSG00000253649|A0A1B0GVH4|PRSS51 ENSG00000253649|ENST00000647727|PRSS51 ENSG00000253649|ENST00000647727|PRSS51 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5303955078125 3 461.530475 1381.5696 NaN NaN NaN NaN NaN NaN NaN 137.58 1 137.58 137.08 138.08 0 0 0 0 2.8426 1 27291 27291 0.69767 0 1 39664 7915 26541 26557 38978 38978 -0.1059255501734242 RTWFFLLLLAN 11 Unmodified _RTWFFLLLLAN_ 0 0 0 REV__ENSG00000131446|ENST00000307826|MGAT1 REV__ENSG00000131446|ENST00000307826|MGAT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2418518066406 3 465.271207 1392.79179 NaN NaN NaN NaN NaN NaN NaN 165.87 1 160.92 160.42 161.42 -4.9484 0 0 0 0.22632 1 32448 32448 0.58532 0.28672 1 + 39665 16074 26542 26558 38979 38979 0.11110790662019099 RTWFWTKWVRM 11 Unmodified _RTWFWTKWVRM_ 0 0 0 ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-4|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2 ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2818603515625 3 532.946729 1595.81836 0.051732 2.757E-05 3.1315 0.0016689 3.1832 0.0016965 533.282249960853 83.718 0.59408 80.11 79.762 80.356 -3.6079 19 16 2 0 0 0 0.66087 1 16318 16318 1.4551 1.4289 1 2784600 39666 3948;12342 26543 26559 38980 38980 0.04428156281619522 RTYLWWWIRPS 11 Unmodified _RTYLWWWIRPS_ 0 0 0 REV__ENST00000467160.1_1_19:19757012-19757291:-|nuORF REV__ENST00000467160.1_1_19:19757012-19757291:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2681274414062 3 521.945494 1562.81465 0.20886 0.00010901 -0.58473 -0.0003052 -0.37587 -0.00019618 521.9448362670073 144.36 0.13522 144.36 144.3 144.44 0 6 3 2 0 0 0 0.81973 1 28844 28844 1.0136 0.50762 1 2466300 + 39667 21976 26544 26560 38981 38981 0.055758097794523565 RVADYIVKV 9 Unmodified _RVADYIVKV_ 0 0 0 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2642211914062 2 531.818941 1061.62333 -0.0054627 -2.9051E-06 0.14112 7.505E-05 0.13566 7.2145E-05 531.8189705025287 88.062 0.93542 88.062 87.642 88.578 0 83 26 4 0 0 0 0.5685 1 17224 17224 15.248 2.7169 1 52529000 39668 4601 26545 26561 38982 38982 0.09498308748311501 RVADYIVKV 9 Unmodified _RVADYIVKV_ 0 0 0 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2734985351562 2 531.818941 1061.62333 0.0092543 4.9216E-06 -0.052903 -2.8135E-05 -0.043649 -2.3213E-05 531.8188740885935 91.686 0.92312 87.761 87.238 88.161 -3.9251 87 26 5 0 0 0 0.41266 2 17961 17918;17961 24.991 3.2443 1 44180000 39669 4601 26545 26561 38983;38984 38984 0.09498308748311501 RVADYIVKV 9 Unmodified _RVADYIVKV_ 0 0 0 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 531.818941 1061.62333 -0.0054627 -2.9051E-06 0.14112 7.505E-05 0.13566 7.2145E-05 531.8189705025287 88.062 0.93542 88.062 87.642 88.578 0 0.23083 0.00028644 NaN 24.991 83 26 4 NaN NaN NaN NaN 0 NaN NaN 0 52529000 39670 4601 26545 26561 0.09498308748311501 RVADYIVKV 9 Unmodified _RVADYIVKV_ 0 0 0 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 531.818941 1061.62333 0.62371 0.0003317 -0.53178 -0.00028281 0.091926 4.8888E-05 531.8186341443936 91.863 1.0025 87.768 87.293 88.295 -4.0946 -0.063195 -0.00042928 NaN 24.991 86 28 4 NaN NaN NaN NaN 0 NaN NaN 0 46890000 39671 4601 26545 26561 0.09498308748311501 RVADYIVKV 9 Unmodified _RVADYIVKV_ 0 0 0 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 ENSG00000145248|ENST00000273861|SLC10A4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 531.818941 1061.62333 0.17435 9.2723E-05 -0.13008 -6.9177E-05 0.044276 2.3547E-05 531.8188030339395 91.543 1.0452 87.735 87.267 88.312 -3.8083 -0.096614 -2.0099E-06 NaN 24.991 91 29 5 NaN NaN NaN NaN 0 NaN NaN 0 46811000 39672 4601 26545 26561 0.09498308748311501 RVAFKFVEQ 9 Unmodified _RVAFKFVEQ_ 0 0 0 REV__tr|U7T2U6|U7T2U6_FUSNUBeta-ketoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fabHPE=3SV=1 REV__tr|U7T2U6|U7T2U6_FUSNUBeta-ketoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fabHPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2125244140625 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 51.525 1 48.642 48.142 49.142 -2.8824 0 0 0 0.23508 1 9790 9790 7.609 0.50723 1 + 39673 25343 26546 26562 38985 38985 0.06217424605551969 RVAILLVSAG 10 Unmodified _RVAILLVSAG_ 0 0 0 REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.0113525390625 3 333.550082 997.628415 -0.017339 -5.7833E-06 -0.15749 -5.2529E-05 -0.17482 -5.8313E-05 333.550016766167 45.451 0.48797 42.586 42.378 42.866 -2.8653 23 13 3 0 0 0 0.91149 1 8285 8285 0.69767 0 1 932150 + 39674 18525 26547 26563 38986 38986 0.1295061261093906 RVAPPPHGP 9 Unmodified _RVAPPPHGP_ 0 0 0 REV__ENST00000396465.5_1_8:74206511-74206658:-|nuORF REV__ENST00000396465.5_1_8:74206511-74206658:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.23046875 3 309.843488 926.508634 -0.15751 -4.8805E-05 0.1819 5.636E-05 0.024383 7.5549E-06 309.84347735684315 19.43 0.53299 18.034 17.776 18.309 -1.3966 24 14 3 0 0 0 0.87888 1 3245 3245 2.7352 2.7352 1 1368000 + 39675 21279 26548 26564 38987 38987 0.04244044057031715 RVDKGLPVNKF 11 Unmodified _RVDKGLPVNKF_ 0 0 0 REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.254150390625 3 424.918945 1271.73501 -0.14134 -6.0056E-05 0.43089 0.00018309 0.28956 0.00012304 424.91903243705497 81.498 0.79431 77.941 77.442 78.236 -3.557 44 22 3 0 0 0 0.78057 1 15858 15858 6.2344 0.45093 1 2073200 + 39676 14259 26549 26565 38988 38988 0.11000743105432775 RVDKGLPVNKF 11 Unmodified _RVDKGLPVNKF_ 0 0 0 REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2386779785156 3 424.918945 1271.73501 0.0064459 2.739E-06 0.21571 9.166E-05 0.22216 9.4399E-05 425.253401045286 81.734 0.6189 77.894 77.577 78.196 -3.8392 27 17 2 0 0 0 0.96104 1 15458 15458 4.4062 0.56024 1 1227800 + 39677 14259 26549 26565 38989 38989 0.11000743105432775 RVDPNGSRY 9 Unmodified _RVDPNGSRY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.270263671875 2 532.267604 1062.52066 -0.10517 -5.5977E-05 -0.080981 -4.3104E-05 -0.18615 -9.9081E-05 532.2676256018043 17.804 1.1087 16.493 16.136 17.245 -1.3109 76 24 5 0 0 0 0.010315 1 2867 2867 103.82 76.195 1 93142000 39678 5864 26550 26566 38990 38990 -0.008103839904151755 RVDPNGSRY 9 Unmodified _RVDPNGSRY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2702026367188 2 532.267604 1062.52066 -0.052794 -2.81E-05 -0.11327 -6.0293E-05 -0.16607 -8.8393E-05 532.2676363223611 17.742 1.0959 16.47 16.144 17.24 -1.2722 78 30 5 0 0 0 0.058839 1 2644 2644 52.735 40.495 1 104620000 39679 5864 26550 26566 38991 38991 -0.008103839904151755 RVDPNGSRY 9 Unmodified _RVDPNGSRY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.267604 1062.52066 0.0063945 3.4036E-06 -0.19547 -0.00010404 -0.18907 -0.00010064 532.2675496495566 16.563 0.94106 16.563 16.369 17.31 0 0.05487 -7.6564E-05 NaN 103.82 50 26 2 NaN NaN NaN NaN 0 NaN NaN 0 104740000 39680 5864 26550 26566 -0.008103839904151755 RVDSFNEEV 9 Unmodified _RVDSFNEEV_ 0 0 0 ITGB5|p.N340Kfs*34|1|0.2|ENSG00000082781|chr3:124819757-124819758|-/T|frameshift_variant;ENSG00000082781|ENST00000296181|ITGB5 ITGB5|p.N340Kfs*34|1|0.2|ENSG00000082781|chr3:124819757-124819758|-/T|frameshift_variant ITGB5|p.N340Kfs*34|1|0.2|ENSG00000082781|chr3:124819757-124819758|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7891235351562 2 547.759278 1093.504 NaN NaN NaN NaN NaN NaN NaN 60.635 1 60.635 60.135 61.135 0 0 0 0 0.23508 1 11628 11628 12.873 0.63195 1 39681 1643 26551 26567 38992 38992 -0.03900929667042874 RVDSFNEEV 9 Unmodified _RVDSFNEEV_ 0 0 0 ITGB5|p.N340Kfs*34|1|0.2|ENSG00000082781|chr3:124819757-124819758|-/T|frameshift_variant;ENSG00000082781|ENST00000296181|ITGB5 ITGB5|p.N340Kfs*34|1|0.2|ENSG00000082781|chr3:124819757-124819758|-/T|frameshift_variant ITGB5|p.N340Kfs*34|1|0.2|ENSG00000082781|chr3:124819757-124819758|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7786865234375 2 547.759278 1093.504 0.2372 0.00012993 -0.58186 -0.00031872 -0.34466 -0.00018879 547.7591511249964 63.741 0.45878 60.743 60.488 60.947 -2.9975 27 12 3 0 0 0 0.45059 1 12335 12335 22.658 5.5452 1 1493200 39682 1643 26551 26567 38993 38993 -0.03900929667042874 RVDSFNEEV 9 Unmodified _RVDSFNEEV_ 0 0 0 ITGB5|p.N340Kfs*34|1|0.2|ENSG00000082781|chr3:124819757-124819758|-/T|frameshift_variant;ENSG00000082781|ENST00000296181|ITGB5 ITGB5|p.N340Kfs*34|1|0.2|ENSG00000082781|chr3:124819757-124819758|-/T|frameshift_variant ITGB5|p.N340Kfs*34|1|0.2|ENSG00000082781|chr3:124819757-124819758|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7713623046875 2 547.759278 1093.504 0.21699 0.00011886 -0.11951 -6.5464E-05 0.097477 5.3394E-05 547.7592231520225 64.138 0.49487 60.723 60.457 60.952 -3.4158 24 13 3 0 0 0 0.45059 1 11981 11981 22.658 3.4011 1 1582800 39683 1643 26551 26567 38994 38994 -0.03900929667042874 RVDSPVTV 8 Unmodified _RVDSPVTV_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000567642.1_1_16:30087698-30092679:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2281494140625 2 436.745442 871.476331 -0.11193 -4.8885E-05 0.17317 7.5631E-05 0.061238 2.6746E-05 436.7454472456973 57.873 0.66585 54.668 54.253 54.919 -3.2052 27 18 2 0 0 0 0.51112 1 10779 10779 27.629 5.8822 1 683800 39684 4814 26552 26568 38995 38995 0.035452118633770624 RVDSPVTV 8 Unmodified _RVDSPVTV_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000567642.1_1_16:30087698-30092679:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.745442 871.476331 -0.24993 -0.00010916 0.41419 0.00018089 0.16426 7.1739E-05 436.74558529509716 57.396 0.67342 54.501 54.132 54.806 -2.8944 -0.053135 0.00024728 NaN 27.629 24 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1015600 39685 4814 26552 26568 0.035452118633770624 RVEADQDQ 8 Unmodified _RVEADQDQ_ 0 0 0 REV__ENST00000468164.1_1_9:97818730-97844994:+|nuORF REV__ENST00000468164.1_1_9:97818730-97844994:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.768310546875 2 480.722695 959.430838 0.089227 4.2893E-05 -3.1034 -0.0014919 -3.0141 -0.001449 480.7227896671825 136.98 1.0214 132.06 131.7 132.72 -4.9216 105 28 4 0 0 0 0.69031 1 26406 26406 15.847 3.3156 1 35915000 + 39686 16961 26553 26569 38996 38996 -0.05050058389667811 RVERTEQFAF 10 Unmodified _RVERTEQFAF_ 0 0 0 REV__TMEM132C|p.R176Q|1|0.35|ENSG00000181234|chr12:128415173-128415173|G/A|missense_variant REV__TMEM132C|p.R176Q|1|0.35|ENSG00000181234|chr12:128415173-128415173|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 428.142333984375 3 428.222805 1281.64658 -0.40897 -0.00017513 0.32255 0.00013812 -0.086422 -3.7008E-05 428.2229295830671 39.913 0.38233 37.364 37.106 37.489 -2.5491 14 10 2 0 0 0 0.91149 1 7401 7401 1.9064 0 1 557940 + 39687 24814 26554 26570 38997 38997 0.017027027950007323 RVERTEQFAF 10 Unmodified _RVERTEQFAF_ 0 0 0 REV__TMEM132C|p.R176Q|1|0.35|ENSG00000181234|chr12:128415173-128415173|G/A|missense_variant REV__TMEM132C|p.R176Q|1|0.35|ENSG00000181234|chr12:128415173-128415173|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 428.222805 1281.64658 0.18649 7.9858E-05 -0.071202 -3.049E-05 0.11529 4.9368E-05 428.5571035432034 37.277 0.27822 37.277 37.16 37.438 0 -0.016298 -0.00014049 NaN 1.9064 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 665410 + 39688 24814 26554 26570 0.017027027950007323 RVERTEQFAF 10 Unmodified _RVERTEQFAF_ 0 0 0 REV__TMEM132C|p.R176Q|1|0.35|ENSG00000181234|chr12:128415173-128415173|G/A|missense_variant REV__TMEM132C|p.R176Q|1|0.35|ENSG00000181234|chr12:128415173-128415173|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 428.222805 1281.64658 -0.0221 -9.4638E-06 -0.022209 -9.5103E-06 -0.044309 -1.8974E-05 428.222724853588 39.789 0.2841 37.249 37.039 37.323 -2.5398 -0.044348 -7.7546E-05 NaN 1.9064 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 542370 + 39689 24814 26554 26570 0.017027027950007323 RVERTEQFAF 10 Unmodified _RVERTEQFAF_ 0 0 0 REV__TMEM132C|p.R176Q|1|0.35|ENSG00000181234|chr12:128415173-128415173|G/A|missense_variant REV__TMEM132C|p.R176Q|1|0.35|ENSG00000181234|chr12:128415173-128415173|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 428.222805 1281.64658 -0.11827 -5.0645E-05 -0.081371 -3.4845E-05 -0.19964 -8.549E-05 428.55712674268005 39.688 0.31758 37.283 37.068 37.385 -2.4049 -0.010253 -0.00015355 NaN 1.9064 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 414010 + 39690 24814 26554 26570 0.017027027950007323 RVEYEALAE 9 Unmodified _RVEYEALAE_ 0 0 0 KRT28|p.A264V|1|0.22|ENSG00000173908|chr17:40797181-40797181|G/A|missense_variant KRT28|p.A264V|1|0.22|ENSG00000173908|chr17:40797181-40797181|G/A|missense_variant KRT28|p.A264V|1|0.22|ENSG00000173908|chr17:40797181-40797181|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2750244140625 2 540.272021 1078.52949 -0.050773 -2.7431E-05 -0.012189 -6.5855E-06 -0.062962 -3.4017E-05 540.2719604723553 67.844 0.9558 67.844 67.368 68.324 0 71 26 4 0 0 0 0.4999 1 13138 13138 20.415 0 1 18193000 39691 12013 26555 26571 38998 38998 -0.006634551446268233 RVEYEALAE 9 Unmodified _RVEYEALAE_ 0 0 0 KRT28|p.A264V|1|0.22|ENSG00000173908|chr17:40797181-40797181|G/A|missense_variant KRT28|p.A264V|1|0.22|ENSG00000173908|chr17:40797181-40797181|G/A|missense_variant KRT28|p.A264V|1|0.22|ENSG00000173908|chr17:40797181-40797181|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.264892578125 2 540.272021 1078.52949 0.43535 0.00023521 -0.62708 -0.00033879 -0.19173 -0.00010359 540.2716323921825 71.346 0.88075 67.879 67.521 68.402 -3.467 56 24 3 0 0 0 0.61324 1 13493 13493 12.241 0 1 6341800 39692 12013 26555 26571 38999 38999 -0.006634551446268233 RVFLLRGP 8 Unmodified _RVFLLRGP_ 0 0 0 ENST00000524821.5_2_8:145753445-145754373:-|nuORF ENST00000524821.5_2_8:145753445-145754373:-|nuORF ENST00000524821.5_2_8:145753445-145754373:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 479.3031921386719 2 479.303262 956.59197 NaN NaN NaN NaN NaN NaN NaN 156.68 1 156.68 156.18 157.18 0 0 0 0 0.22684 1 31434 31434 0.68139 0 1 39693 10887 26556 26572 39000 39000 0.11193780504913775 RVFRTTWL 8 Unmodified _RVFRTTWL_ 0 0 0 nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN nc|ENSG00000128944|Q9Y448-3|KNSTRN nc|ENSG00000128944|Q9Y448-3|KNSTRN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20989990234375 3 360.210059 1077.60835 NaN NaN NaN NaN NaN NaN NaN 84.364 1 84.364 83.864 84.864 0 0 0 0 0.23664 1 16454 16454 3.2813 0 1 39694 3550 26557 26573 39001 39001 0.07264861671001199 RVFSSAEAL 9 Unmodified _RVFSSAEAL_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;UBE3A|p.K226Nfs*2|1|0.34|ENSG00000114062|chr15:25371505-25371505|T/-|frameshift_variant nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2642822265625 2 490.263999 978.513445 0.096846 4.748E-05 -0.12904 -6.3264E-05 -0.032194 -1.5784E-05 490.2640044804408 83.369 0.73692 79.761 79.413 80.15 -3.6079 31 20 2 0 0 0 0.30056 1 16337 16337 2.6312 0 1 1768800 39695 2773 26558 26574 39002 39002 0.023328834091330464 RVFTRHPH 8 Unmodified _RVFTRHPH_ 0 0 0 REV__ENST00000482445.5_1_18:74701791-74728973:-|nuORF REV__ENST00000482445.5_1_18:74701791-74728973:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.85498046875 3 350.529903 1048.56788 -0.42441 -0.00014877 0.10142 3.5552E-05 -0.32299 -0.00011322 350.5298982032685 27.996 0.45162 25.999 25.787 26.238 -1.9962 30 12 3 0 0 0 0.87133 1 4678 4678 3.5871 1.8448 1 2996300 + 39696 22189 26559 26575 39003 39003 0.045539400712414135 RVGPPYYQ 8 Unmodified _RVGPPYYQ_ 0 0 0 REV__PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant REV__PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.253173828125 2 490.253434 978.492316 NaN NaN NaN NaN NaN NaN NaN 72.93 1 69.303 68.803 69.803 -3.6275 0 0 0 0.21452 1 13780 13780 13.508 3.3245 1 + 39697 16754 26560 26576 39004 39004 0.002209181002854166 RVGVKRRR 8 Unmodified _RVGVKRRR_ 0 0 0 ENSG00000185453|ENST00000614654|ZSWIM9 ENSG00000185453|ENST00000614654|ZSWIM9 ENSG00000185453|ENST00000614654|ZSWIM9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.8751220703125 3 342.896698 1025.66826 0.19346 6.6338E-05 1.8715 0.00064175 2.065 0.00070808 342.89731992540845 27.082 0.66501 25.447 25.212 25.877 -1.6347 33 18 2 0 0 0 8448 1 4531 4531 1.7423 0.89733 1 4340000 39698 6992 26561 26577 39005 39005 0.15645597124876076 RVHTHTPHIY 10 Unmodified _RVHTHTPHIY_ 0 0 0 ENST00000590949.5_1_17:40439920-40440070:+|nuORF ENST00000590949.5_1_17:40439920-40440070:+|nuORF ENST00000590949.5_1_17:40439920-40440070:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.76611328125 2 630.833446 1259.65234 NaN NaN NaN NaN NaN NaN NaN 124.7 1 119.93 119.43 120.43 -4.7681 0 0 0 2.8426 1 23946 23946 0.26539 0.2216 1 39699 11607 26562 26578 39006 39006 0.032898460973228794 RVIAGQFF 8 Unmodified _RVIAGQFF_ 0 0 0 ENSG00000130768|ENST00000373894|SMPDL3B;nc|ENSG00000130768|Q92485-2|SMPDL3B;ENST00000548116.5_1_1:28271947-28285346:+|nuORF ENSG00000130768|ENST00000373894|SMPDL3B ENSG00000130768|ENST00000373894|SMPDL3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.1327209472656 3 313.179989 936.518136 NaN NaN NaN NaN NaN NaN NaN 45.906 1 43.065 42.565 43.565 -2.8409 0 0 0 0.23584 1 8658 8658 0.12286 0 1 39700 3635 26563 26579 39007 39007 0.04733812342578858 RVIFDPFYLWK 11 Unmodified _RVIFDPFYLWK_ 0 0 0 REV__nc|ENSG00000154864|Q9H5I5-4|PIEZO2 REV__nc|ENSG00000154864|Q9H5I5-4|PIEZO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3804931640625 2 742.408455 1482.80236 NaN NaN NaN NaN NaN NaN NaN 148.38 1 143.32 142.82 143.82 -5.0595 0 0 0 0.22632 1 28738 28738 0.026206 0 1 + 39701 17201 26564 26580 39008 39008 0.08026773316419167 RVIKVPDKK 9 Unmodified _RVIKVPDKK_ 0 0 0 REV__MCTS1|p.F71Lfs*12|1|0.37|ENSG00000232119|chrX:120606122-120606122|T/-|frameshift_variant REV__MCTS1|p.F71Lfs*12|1|0.37|ENSG00000232119|chrX:120606122-120606122|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.8579711914062 2 541.855858 1081.69716 NaN NaN NaN NaN NaN NaN NaN 11.444 1 10.54 10.04 11.04 -0.90401 0 0 0 0.23508 1 1516 1516 0.45834 0 1 + 39702 14808 26565 26581 39009 39009 0.15958276910646418 RVISRCPP 8 Unmodified _RVISRCPP_ 0 0 0 REV__nc|ENSG00000134574|Q92466-4|DDB2 REV__nc|ENSG00000134574|Q92466-4|DDB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2311096191406 3 309.844612 926.512005 -0.27287 -8.4548E-05 -2.1377 -0.00066237 -2.4106 -0.00074692 309.8437125625543 19.972 0.13643 18.646 18.595 18.731 -1.3251 5 3 2 0 0 0 1.0249 1 3067 3067 1.6526 0 1 136490 + 39703 16218 26566 26582 39010 39010 0.04580970839390375 RVIYKVIN 8 Unmodified _RVIYKVIN_ 0 0 0 tr|U7SPB2|U7SPB2_FUSNURelE/StbEfamilyaddictionmoduletoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01688PE=4SV=1 tr|U7SPB2|U7SPB2_FUSNURelE/StbEfamilyaddictionmoduletoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01688PE=4SV=1 tr|U7SPB2|U7SPB2_FUSNURelE/StbEfamilyaddictionmoduletoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01688PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.5015563964844 3 335.54656 1003.61785 NaN NaN NaN NaN NaN NaN NaN 13.743 1 13.743 13.243 14.243 0 0 0 0 0.2396 1 2005 2005 0.0082765 0 1 39704 26041 26567 26583 39011 39011 0.11618629956524273 RVKDFATVY 9 Unmodified _RVKDFATVY_ 0 0 0 CON__P15497 CON__P15497 CON__P15497 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.12298583984375 3 366.869591 1097.58694 -0.36968 -0.00013563 0.92898 0.00034081 0.5593 0.00020519 367.2043166070451 66.718 0.51566 63.391 63.133 63.648 -3.3268 21 14 2 0 0 0 0.47592 1 12577 12577 17.113 14.614 1 900370 + 39705 665 26568 26584 39012 39012 0.04205431851596586 RVKDFATVY 9 Unmodified _RVKDFATVY_ 0 0 0 CON__P15497 CON__P15497 CON__P15497 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 366.869591 1097.58694 -0.268 -9.8321E-05 0.5311 0.00019484 0.2631 9.6523E-05 366.86963764338367 66.701 0.44981 63.593 63.306 63.756 -3.1086 0.087267 0.00012813 NaN 17.113 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1453500 + 39706 665 26568 26584 0.04205431851596586 RVKDFATVY 9 Unmodified _RVKDFATVY_ 0 0 0 CON__P15497 CON__P15497 CON__P15497 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 366.869591 1097.58694 0.28533 0.00010468 -0.41473 -0.00015215 -0.1294 -4.7471E-05 366.8694018524972 67.029 0.39256 63.533 63.319 63.711 -3.4965 0.02719 -0.00091286 NaN 17.113 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 699950 + 39707 665 26568 26584 0.04205431851596586 RVKKVILL 8 Unmodified _RVKKVILL_ 0 0 0 REV__ENST00000418116.6_1_11:18344284-18382305:+|nuORF REV__ENST00000418116.6_1_11:18344284-18382305:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 484.8569030761719 2 484.852587 967.690622 NaN NaN NaN NaN NaN NaN NaN 9.4458 1 8.4111 7.9111 8.9111 -1.0347 0 0 0 0.21486 1 964 964 0 0 1 + 39708 15217 26569 26585 39013 39013 0.20548383749951427 RVKLVIFVI 9 Unmodified _RVKLVIFVI_ 0 0 0 ENSG00000121853|ENST00000241256|GHSR;nc|ENSG00000121853|Q92847-2|GHSR ENSG00000121853|ENST00000241256|GHSR ENSG00000121853|ENST00000241256|GHSR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.91839599609375 3 362.918105 1085.73249 NaN NaN NaN NaN NaN NaN NaN 10.894 1 10.894 10.394 11.394 0 0 0 0 0.23508 1 1399 1399 0 0 1 39709 3192 26570 26586 39014 39014 0.19304939438461588 RVKLVPGY 8 Unmodified _RVKLVPGY_ 0 0 0 ST3GAL2-COG4|3|fusion;ST3GAL2-COG4|2|fusion;ST3GAL2|p.H147Tfs*31|1|0.09|ENSG00000157350|chr16:70395076-70395076|G/-|frameshift_variant;ENSG00000157350|ENST00000342907|ST3GAL2;ST3GAL2-COG4|1|fusion ST3GAL2-COG4|3|fusion ST3GAL2-COG4|3|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2261657714844 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 97.399 1 97.399 96.899 97.899 0 0 0 0 0.21486 1 19087 19087 0.45834 0 1 39710 25791 26571 26587 39015 39015 0.09702671893717252 RVKQLHLPP 9 Unmodified _RVKQLHLPP_ 0 0 0 ENST00000296325.9_1_4:3514703-3533784:-|nuORF ENST00000296325.9_1_4:3514703-3533784:-|nuORF ENST00000296325.9_1_4:3514703-3533784:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7750854492188 2 544.340375 1086.6662 0.076514 4.1649E-05 -0.31452 -0.00017121 -0.23801 -0.00012956 544.3402377773948 17.918 0.17494 16.607 16.511 16.686 -1.3109 8 4 2 0 0 0 0.87888 1 2878 2878 4.756 2.6963 1 204340 39711 8506 26572 26588 39016 39016 0.12633123596424412 RVKRLQRRRWD 11 Unmodified _RVKRLQRRRWD_ 0 0 0 REV__ENSG00000095015|ENST00000399503|MAP3K1 REV__ENSG00000095015|ENST00000399503|MAP3K1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6958618164062 3 523.650075 1567.92839 NaN NaN NaN NaN NaN NaN NaN 135.45 1 130.81 130.31 131.31 -4.6399 0 0 0 0.23698 1 26714 26714 0.50596 0.41111 1 + 39712 14602 26573 26589 39017 39017 0.16714717665058743 RVLARDFQRL 10 Unmodified _RVLARDFQRL_ 0 0 0 ZNF276|p.V114A|1|0.11|ENSG00000158805|chr16:89722666-89722666|T/C|missense_variant ZNF276|p.V114A|1|0.11|ENSG00000158805|chr16:89722666-89722666|T/C|missense_variant ZNF276|p.V114A|1|0.11|ENSG00000158805|chr16:89722666-89722666|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24053955078125 3 425.254439 1272.74149 NaN NaN NaN NaN NaN NaN NaN 133.56 1 128.92 128.42 129.42 -4.6399 0 0 0 2.8426 1 26334 26334 0.26539 0 1 39713 26611 26574 26590 39018 39018 0.11602681056842812 RVLDSDGSDRL 11 Unmodified _RVLDSDGSDRL_ 0 0 0 ENST00000576995.1_1_17:79079719-79080836:+|nuORF;BAIAP2|p.D470Ifs*41|1|0.42|ENSG00000175866|chr17:81106809-81106809|C/-|frameshift_variant;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF ENST00000576995.1_1_17:79079719-79080836:+|nuORF ENST00000576995.1_1_17:79079719-79080836:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1142883300781 3 411.545836 1231.61568 -0.19762 -8.1332E-05 0.2567 0.00010564 0.059072 2.4311E-05 411.545925991204 46.112 0.38202 43.272 43.068 43.45 -2.8409 18 10 2 0 0 0 0.96179 1 8704 8704 3.8459 2.3908 1 1681300 39714 297 26575 26591 39019 39019 0.009135046901064925 RVLDSDGSDRL 11 Unmodified _RVLDSDGSDRL_ 0 0 0 ENST00000576995.1_1_17:79079719-79080836:+|nuORF;BAIAP2|p.D470Ifs*41|1|0.42|ENSG00000175866|chr17:81106809-81106809|C/-|frameshift_variant;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF ENST00000576995.1_1_17:79079719-79080836:+|nuORF ENST00000576995.1_1_17:79079719-79080836:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 411.545836 1231.61568 0.27213 0.000112 -0.20421 -8.404E-05 0.067929 2.7956E-05 411.54575918199737 43.207 0.40858 43.207 42.953 43.362 0 -0.067047 -0.00031338 NaN 3.8459 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1598200 39715 297 26575 26591 0.009135046901064925 RVLDSDGSDRL 11 Unmodified _RVLDSDGSDRL_ 0 0 0 ENST00000576995.1_1_17:79079719-79080836:+|nuORF;BAIAP2|p.D470Ifs*41|1|0.42|ENSG00000175866|chr17:81106809-81106809|C/-|frameshift_variant;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF ENST00000576995.1_1_17:79079719-79080836:+|nuORF ENST00000576995.1_1_17:79079719-79080836:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 411.545836 1231.61568 -0.033639 -1.3844E-05 -0.12043 -4.9564E-05 -0.15407 -6.3408E-05 411.545914100717 46.154 0.52083 43.289 43.067 43.588 -2.8653 0.015159 -0.00020996 NaN 3.8459 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1043500 39716 297 26575 26591 0.009135046901064925 RVLDSDGSDRL 11 Unmodified _RVLDSDGSDRL_ 0 0 0 ENST00000576995.1_1_17:79079719-79080836:+|nuORF;BAIAP2|p.D470Ifs*41|1|0.42|ENSG00000175866|chr17:81106809-81106809|C/-|frameshift_variant;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF ENST00000576995.1_1_17:79079719-79080836:+|nuORF ENST00000576995.1_1_17:79079719-79080836:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 411.545836 1231.61568 -0.51253 -0.00021093 0.3898 0.00016042 -0.12273 -5.051E-05 411.54594153453485 46.194 0.40949 43.328 43.097 43.507 -2.8666 0.054049 0.00042 NaN 3.8459 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 907570 39717 297 26575 26591 0.009135046901064925 RVLEELEGV 9 Unmodified _RVLEELEGV_ 0 0 0 PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant;PI4KA|p.H1295Pfs*13|1|0.28|ENSG00000241973|chr22:20734411-20734412|-/G|frameshift_variant;PI4KA|p.H1295Tfs*36|2|0.31|ENSG00000241973|chr22:20734412-20734412|G/-|frameshift_variant;ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2776489257812 2 522.290214 1042.56587 0.62968 0.00032888 -0.66145 -0.00034547 -0.031773 -1.6595E-05 522.2898623760831 101.26 0.59497 101.26 100.94 101.54 0 27 16 2 0 0 0 0.086396 3 19899 19839;19899;19911 60.074 3.8969 1 3595500 39718 7862 26576 26592 39020;39021;39022 39021 0.04629421752088092 RVLEELEGV 9 Unmodified _RVLEELEGV_ 0 0 0 PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant;PI4KA|p.H1295Pfs*13|1|0.28|ENSG00000241973|chr22:20734411-20734412|-/G|frameshift_variant;PI4KA|p.H1295Tfs*36|2|0.31|ENSG00000241973|chr22:20734412-20734412|G/-|frameshift_variant;ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2576293945312 2 522.290214 1042.56587 -0.48034 -0.00025088 0.99234 0.00051829 0.512 0.00026741 522.2905201739147 105.31 0.70385 101.04 100.71 101.41 -4.2638 37 19 3 0 0 0 0.02633 2 20726 20726;20739 85.642 6.9135 1 3367600 39719 7862 26576 26592 39023;39024 39023 0.04629421752088092 RVLEELEGV 9 Unmodified _RVLEELEGV_ 0 0 0 PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant;PI4KA|p.H1295Pfs*13|1|0.28|ENSG00000241973|chr22:20734411-20734412|-/G|frameshift_variant;PI4KA|p.H1295Tfs*36|2|0.31|ENSG00000241973|chr22:20734412-20734412|G/-|frameshift_variant;ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2802124023438 2 522.290214 1042.56587 -0.6059 -0.00031645 0.8093 0.00042269 0.2034 0.00010623 522.2906516749852 105.47 0.53478 101.09 100.8 101.34 -4.3764 30 14 3 0 0 0 0.11828 1 20211 20211 49.554 1.8056 1 4497500 39720 7862 26576 26592 39025 39025 0.04629421752088092 RVLEELEGV 9 Unmodified _RVLEELEGV_ 0 0 0 PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant;PI4KA|p.H1295Pfs*13|1|0.28|ENSG00000241973|chr22:20734411-20734412|-/G|frameshift_variant;PI4KA|p.H1295Tfs*36|2|0.31|ENSG00000241973|chr22:20734412-20734412|G/-|frameshift_variant;ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2772827148438 2 522.290214 1042.56587 0.80298 0.00041939 -0.59373 -0.0003101 0.20924 0.00010929 522.290063411576 105.21 0.63836 101.12 100.72 101.36 -4.0913 31 17 2 0 0 0 0.094316 1 20250 20250 57.722 6.0922 1 4219300 39721 7862 26576 26592 39026 39026 0.04629421752088092 RVLGLRRSLPA 11 Unmodified _RVLGLRRSLPA_ 0 0 0 ENST00000434206.1_1_3:43020805-43095327:+|nuORF;ENSG00000144649|ENST00000430121|GASK1A ENST00000434206.1_1_3:43020805-43095327:+|nuORF ENST00000434206.1_1_3:43020805-43095327:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 413.1996765136719 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 136.91 1 132.07 131.57 132.57 -4.84 0 0 0 0.23689 1 26372 26372 2.8433 0 1 39722 4566 26577 26593 39027 39027 0.16895557953557727 RVLGPKIEAV 10 Unmodified _RVLGPKIEAV_ 0 0 0 nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2 nc|ENSG00000167674|Q7Z4V5-2|HDGFL2 nc|ENSG00000167674|Q7Z4V5-2|HDGFL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2745971679688 2 541.340041 1080.66553 0.32351 0.00017513 -1.5561 -0.00084237 -1.2326 -0.00066724 541.840416099923 72.773 0.50711 69.146 68.838 69.345 -3.6275 16 13 2 0 0 0 0.47611 1 13733 13733 6.6304 6.365 1 816230 39723 5831 26578 26594 39028 39028 0.1284228415670441 RVLHRRVGP 9 Unmodified _RVLHRRVGP_ 0 0 0 REV__nc|ENSG00000164889|P04920-2|SLC4A2 REV__nc|ENSG00000164889|P04920-2|SLC4A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 364.19744873046875 3 363.896586 1088.66793 NaN NaN NaN NaN NaN NaN NaN 18.025 1 18.025 17.525 18.525 0 0 0 0 0.19623 1 2880 2880 0.40827 0.335 1 + 39724 17719 26579 26595 39029 39029 0.12714177405041482 RVLIHLIMH 9 Unmodified _RVLIHLIMH_ 0 0 0 ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;ITPR2|p.L1313Ffs*10|1|0.43|ENSG00000123104|chr12:26599208-26599209|-/A|frameshift_variant;ITPR2|p.D1068G|1|0.26|ENSG00000123104|chr12:26622325-26622325|T/C|missense_variant ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.898681640625 3 377.898828 1130.67465 NaN NaN NaN NaN NaN NaN NaN 7.8652 1 7.1861 6.6861 7.6861 -0.67913 0 0 0 0.23508 1 759 759 0 0 1 39725 3250 26580 26596 39030 39030 0.11454354241413967 RVLIHLIMH 9 Unmodified _RVLIHLIMH_ 0 0 0 ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;ITPR2|p.L1313Ffs*10|1|0.43|ENSG00000123104|chr12:26599208-26599209|-/A|frameshift_variant;ITPR2|p.D1068G|1|0.26|ENSG00000123104|chr12:26622325-26622325|T/C|missense_variant ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.9050598144531 3 377.898828 1130.67465 NaN NaN NaN NaN NaN NaN NaN 11.373 1 10.469 9.9692 10.969 -0.90401 0 0 0 0.23508 1 1502 1502 0 0 1 39726 3250 26580 26596 39031 39031 0.11454354241413967 RVLIHLIMH 9 Unmodified _RVLIHLIMH_ 0 0 0 ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;ITPR2|p.L1313Ffs*10|1|0.43|ENSG00000123104|chr12:26599208-26599209|-/A|frameshift_variant;ITPR2|p.D1068G|1|0.26|ENSG00000123104|chr12:26622325-26622325|T/C|missense_variant ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.8988037109375 3 377.898828 1130.67465 NaN NaN NaN NaN NaN NaN NaN 11.453 1 10.549 10.049 11.049 -0.90401 0 0 0 0.23508 1 1518 1518 0 0 1 39727 3250 26580 26596 39032 39032 0.11454354241413967 RVLKKRKLY 9 Unmodified _RVLKKRKLY_ 0 0 0 REV__AKAP13|p.D2226Y|1|0.12|ENSG00000170776|chr15:85723251-85723251|G/T|missense_variant REV__AKAP13|p.D2226Y|1|0.12|ENSG00000170776|chr15:85723251-85723251|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.288330078125 2 602.40605 1202.79755 NaN NaN NaN NaN NaN NaN NaN 76.387 1 72.664 72.164 73.164 -3.7227 0 0 0 0.23508 1 14461 14461 0.6015 0.14316 1 + 39728 12997 26581 26597 39033 39033 0.20425933964315846 RVLKKRKLY 9 Unmodified _RVLKKRKLY_ 0 0 0 REV__AKAP13|p.D2226Y|1|0.12|ENSG00000170776|chr15:85723251-85723251|G/T|missense_variant REV__AKAP13|p.D2226Y|1|0.12|ENSG00000170776|chr15:85723251-85723251|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2958984375 2 602.40605 1202.79755 NaN NaN NaN NaN NaN NaN NaN 83.254 1 79.38 78.88 79.88 -3.8736 0 0 0 0.19631 1 15812 15812 0.20686 0 1 + 39729 12997 26581 26597 39034 39034 0.20425933964315846 RVLKKRKLY 9 Unmodified _RVLKKRKLY_ 0 0 0 REV__AKAP13|p.D2226Y|1|0.12|ENSG00000170776|chr15:85723251-85723251|G/T|missense_variant REV__AKAP13|p.D2226Y|1|0.12|ENSG00000170776|chr15:85723251-85723251|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2958984375 2 602.40605 1202.79755 NaN NaN NaN NaN NaN NaN NaN 83.266 1 79.393 78.893 79.893 -3.8736 0 0 0 0.23508 1 15814 15814 2.3027 0.4585 1 + 39730 12997 26581 26597 39035 39035 0.20425933964315846 RVLKKRKLY 9 Unmodified _RVLKKRKLY_ 0 0 0 REV__AKAP13|p.D2226Y|1|0.12|ENSG00000170776|chr15:85723251-85723251|G/T|missense_variant REV__AKAP13|p.D2226Y|1|0.12|ENSG00000170776|chr15:85723251-85723251|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.29736328125 2 602.40605 1202.79755 NaN NaN NaN NaN NaN NaN NaN 136.8 1 131.88 131.38 132.38 -4.9216 0 0 0 0.23508 1 26294 26294 0.6015 0.076735 1 + 39731 12997 26581 26597 39036 39036 0.20425933964315846 RVLKKRKLY 9 Unmodified _RVLKKRKLY_ 0 0 0 REV__AKAP13|p.D2226Y|1|0.12|ENSG00000170776|chr15:85723251-85723251|G/T|missense_variant REV__AKAP13|p.D2226Y|1|0.12|ENSG00000170776|chr15:85723251-85723251|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2807006835938 2 602.40605 1202.79755 NaN NaN NaN NaN NaN NaN NaN 103.15 1 99.13 98.63 99.63 -4.0212 0 0 0 0.19624 1 19831 19831 0.073264 0.069883 1 + 39732 12997 26581 26597 39037 39037 0.20425933964315846 RVLKKRKLY 9 Unmodified _RVLKKRKLY_ 0 0 0 REV__AKAP13|p.D2226Y|1|0.12|ENSG00000170776|chr15:85723251-85723251|G/T|missense_variant REV__AKAP13|p.D2226Y|1|0.12|ENSG00000170776|chr15:85723251-85723251|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2960815429688 2 602.40605 1202.79755 NaN NaN NaN NaN NaN NaN NaN 123.09 1 118.5 118 119 -4.5926 0 0 0 0.23508 1 23693 23693 0.6015 0.14316 1 + 39733 12997 26581 26597 39038 39038 0.20425933964315846 RVLLVALILLL 11 Unmodified _RVLLVALILLL_ 0 0 0 ENSG00000087253|ENST00000262134|LPCAT2;ENST00000566911.1_1_16:55543042-55559560:+|nuORF ENSG00000087253|ENST00000262134|LPCAT2 ENSG00000087253|ENST00000262134|LPCAT2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 618.5052490234375 2 618.444309 1234.87407 NaN NaN NaN NaN NaN NaN NaN 44.897 1 42.107 41.607 42.607 -2.79 0 0 0 0.23698 1 8447 8447 0 0 1 39734 1710 26582 26598 39039 39039 0.26602312740965317 RVLPKYLGY 9 Unmodified _RVLPKYLGY_ 0 0 0 ENST00000397792.8_1_12:95625312-95650394:+|nuORF;nc|ENSG00000028203|Q9HBM0-6|VEZT ENST00000397792.8_1_12:95625312-95650394:+|nuORF ENST00000397792.8_1_12:95625312-95650394:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 370.2970275878906 3 370.221965 1107.64407 NaN NaN NaN NaN NaN NaN NaN 125.78 1 121.13 120.63 121.63 -4.6495 0 0 0 0.23508 1 24202 24202 1.1933 0.41681 1 39735 9475 26583 26599 39040 39040 0.09454899127990757 RVLQECHWWRR 11 Unmodified _RVLQECHWWRR_ 0 0 0 ENST00000368192.8_1_1:157095491-157095569:-|nuORF ENST00000368192.8_1_1:157095491-157095569:-|nuORF ENST00000368192.8_1_1:157095491-157095569:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3814697265625 2 784.904411 1567.79427 NaN NaN NaN NaN NaN NaN NaN 122.16 1 117.47 116.97 117.97 -4.6873 0 0 0 0.22632 1 23455 23455 0.094841 0 1 39736 9091 26584 26600 39041 39041 0.03308315847971244 RVLRGELQH 9 Unmodified _RVLRGELQH_ 0 0 0 REV__ENST00000429404.1_1_10:60896824-60897136:-|nuORF REV__ENST00000429404.1_1_10:60896824-60897136:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.85577392578125 3 369.884235 1106.63087 NaN NaN NaN NaN NaN NaN NaN 23.506 1 23.506 23.006 24.006 0 0 0 0 0.19657 1 4012 4012 0.073264 0 1 + 39737 18455 26585 26601 39042 39042 0.08182461068599878 RVLRKKYQI 9 Unmodified _RVLRKKYQI_ 0 0 0 ENST00000526813.1_1_11:117059296-117060153:+|nuORF;ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2 ENST00000526813.1_1_11:117059296-117060153:+|nuORF ENST00000526813.1_1_11:117059296-117060153:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.281005859375 2 602.387857 1202.76116 NaN NaN NaN NaN NaN NaN NaN 161.44 1 161.44 160.94 161.94 0 0 0 0 0.19687 1 32428 32428 8.1555 1.5252 1 39738 4802 26586 26602 39043 39043 0.16789057067603608 RVLRPLRTIN 10 Unmodified _RVLRPLRTIN_ 0 0 0 CACNA1H|p.A209T|1|0.12|ENSG00000196557|chr16:1196005-1196005|G/A|missense_variant CACNA1H|p.A209T|1|0.12|ENSG00000196557|chr16:1196005-1196005|G/A|missense_variant CACNA1H|p.A209T|1|0.12|ENSG00000196557|chr16:1196005-1196005|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 413.2660217285156 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 131.96 1 131.96 131.46 132.46 0 0 0 0 0.22588 1 26083 26083 3.3196 0.68841 1 39739 362 26587 26603 39044 39044 0.16895557953557727 RVLSYLLPVSL 11 Unmodified _RVLSYLLPVSL_ 0 0 0 REV__ENSG00000183307|ENST00000331437|TMEM121B REV__ENSG00000183307|ENST00000331437|TMEM121B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7728271484375 2 630.389731 1258.76491 0.7406 0.00046686 -0.45895 -0.00028932 0.28165 0.00017755 630.3891435816379 104.6 0.58477 100.38 100.1 100.68 -4.2183 41 16 3 0 0 0 0.76834 1 20554 20554 7.1017 0 1 2884500 + 39740 18827 26588 26604 39045 39045 0.14587682050796502 RVMEEIRNLTV 11 Unmodified _RVMEEIRNLTV_ 0 0 0 nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC nc|ENSG00000066136|Q13952-3|NFYC nc|ENSG00000066136|Q13952-3|NFYC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7555847167969 3 453.918616 1358.73402 NaN NaN NaN NaN NaN NaN NaN 107.49 1 103.36 102.86 103.86 -4.135 0 0 0 0.23159 1 20676 20676 7.0341 2.628 1 39741 12227 26589 26605 39046 39046 0.06900160674240396 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2042541503906 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 107.11 1 107.11 106.61 107.61 0 0 0 0 0.21486 1 21061 21061 0.40072 0 1 + 39742 13476 26590 26606 39047 39047 0.06402721779363674 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.185546875 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 90.159 1 86.299 85.799 86.799 -3.8595 0 0 0 0.21486 1 17638 17638 1.6526 0 1 + 39743 13476 26590 26606 39048 39048 0.06402721779363674 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2041931152344 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 96.423 1 92.332 91.832 92.832 -4.0907 0 0 0 0.21486 1 18909 18909 1.6526 0 1 + 39744 13476 26590 26606 39049 39049 0.06402721779363674 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1850280761719 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 96.845 1 92.747 92.247 93.247 -4.0978 0 0 0 0.21486 1 18996 18996 1.6526 0 1 + 39745 13476 26590 26606 39050 39050 0.06402721779363674 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.185546875 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 98.823 1 94.691 94.191 95.191 -4.1326 0 0 0 0.21486 1 19405 19405 1.6526 0 1 + 39746 13476 26590 26606 39051 39051 0.06402721779363674 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1855773925781 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 100.13 1 95.972 95.472 96.472 -4.1594 0 0 0 0.21486 1 19675 19675 1.6526 0 1 + 39747 13476 26590 26606 39052 39052 0.06402721779363674 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.19677734375 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 107.5 1 103.18 102.68 103.68 -4.32 0 0 0 0.21486 1 21173 21173 1.6526 0 1 + 39748 13476 26590 26606 39053 39053 0.06402721779363674 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1828918457031 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 107.55 1 103.23 102.73 103.73 -4.32 0 0 0 0.21486 1 21184 21184 1.6526 0 1 + 39749 13476 26590 26606 39054 39054 0.06402721779363674 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1749267578125 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 107.95 1 103.63 103.13 104.13 -4.32 0 0 0 0.21486 1 21265 21265 1.6526 0 1 + 39750 13476 26590 26606 39055 39055 0.06402721779363674 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.21142578125 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 111.34 1 106.92 106.42 107.42 -4.4231 0 0 0 0.21486 1 21937 21937 1.6526 0 1 + 39751 13476 26590 26606 39056 39056 0.06402721779363674 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.19659423828125 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 125.15 1 120.55 120.05 121.05 -4.5984 0 0 0 0.21486 1 24677 24677 1.6526 0 1 + 39752 13476 26590 26606 39057 39057 0.06402721779363674 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2054138183594 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 125.97 1 121.37 120.87 121.87 -4.5984 0 0 0 0.21486 1 24834 24834 1.6526 0 1 + 39753 13476 26590 26606 39058 39058 0.06402721779363674 RVMKGLVE 8 Unmodified _RVMKGLVE_ 0 0 0 REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant REV__COL14A1|p.G1524Efs*48|1|0.15|ENSG00000187955|chr8:120315546-120315546|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.22161865234375 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 124.26 1 119.53 119.03 120.03 -4.731 0 0 0 0.21486 1 23864 23864 0.40072 0 1 + 39754 13476 26590 26606 39059 39059 0.06402721779363674 RVPIYQELRGE 11 Unmodified _RVPIYQELRGE_ 0 0 0 REV__ENST00000465842.1_1_22:51020081-51020803:-|nuORF REV__ENST00000465842.1_1_22:51020081-51020803:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.8874816894531 3 453.917493 1358.73065 NaN NaN NaN NaN NaN NaN NaN 10.581 1 9.6768 9.1768 10.177 -0.90401 0 0 0 0.23698 1 1335 1335 0.094841 0 1 + 39755 21960 26591 26607 39060 39060 0.06563233891870368 RVPKRPII 8 Unmodified _RVPKRPII_ 0 0 0 CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2 CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26580810546875 2 489.832186 977.649819 NaN NaN NaN NaN NaN NaN NaN 155.63 1 150.38 149.88 150.88 -5.2526 0 0 0 0.2396 1 30182 30182 0.12286 0 1 39756 480 26592 26608 39061 39061 0.16010042430320937 RVPLLQLPRRW 11 Unmodified _RVPLLQLPRRW_ 0 0 0 ENST00000258415.8_1_2:219646678-219646789:+|nuORF ENST00000258415.8_1_2:219646678-219646789:+|nuORF ENST00000258415.8_1_2:219646678-219646789:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73309326171875 3 478.63325 1432.87792 -0.38715 -0.0001853 -0.54196 -0.0002594 -0.9291 -0.0004447 478.96741104084595 18.321 0.20287 17.048 16.93 17.133 -1.2722 12 5 3 0 0 0 0.89134 1 2722 2722 0.094841 0.094841 1 637170 39757 8269 26593 26609 39062 39062 0.17879795287331035 RVPPPPHGA 9 Unmodified _RVPPPPHGA_ 0 0 0 ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-3|SCNN1A;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A ENST00000540037.5_2_12:6464995-6472854:-|nuORF ENST00000540037.5_2_12:6464995-6472854:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24163818359375 2 464.261594 926.508634 -0.35942 -0.00016687 0.36891 0.00017127 0.0094857 4.4038E-06 464.26169293126884 19.308 1.1156 17.983 17.721 18.837 -1.3251 62 31 3 0 0 0 0.085258 1 2946 2946 60.39 10.457 1 10749000 39758 2615 26594 26610 39063 39063 0.04244044057031715 RVPPPPHQ 8 Unmodified _RVPPPPHQ_ 0 0 0 ENST00000540486.5_1_17:7833707-7833791:-|nuORF ENST00000540486.5_1_17:7833707-7833791:-|nuORF ENST00000540486.5_1_17:7833707-7833791:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 464.1231689453125 2 464.261594 926.508634 0.087469 4.0609E-05 -0.17445 -8.099E-05 -0.086981 -4.0382E-05 464.2614637553479 17.934 0.74422 17.934 17.657 18.402 0 43 20 3 0 0 0 0.97966 1 2907 2907 16.942 0 1 5446700 39759 11070 26595 26611 39064 39064 0.04244044057031715 RVPPPPHQ 8 Unmodified _RVPPPPHQ_ 0 0 0 ENST00000540486.5_1_17:7833707-7833791:-|nuORF ENST00000540486.5_1_17:7833707-7833791:-|nuORF ENST00000540486.5_1_17:7833707-7833791:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1708068847656 3 309.843488 926.508634 -0.31723 -9.8291E-05 0.38671 0.00011982 0.069476 2.1527E-05 309.8435569438003 19.286 0.4918 17.961 17.755 18.247 -1.3251 28 13 3 0 0 0 1.0191 1 2984 2984 6.2058 0.9089 1 1706300 39760 11070 26595 26611 39065 39065 0.04244044057031715 RVPWRQRTRE 10 Unmodified _RVPWRQRTRE_ 0 0 0 REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1 REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5386047363281 3 461.928726 1382.76435 -0.50148 -0.00023165 -0.43117 -0.00019917 -0.93265 -0.00043082 461.9287032134029 17.211 0.34371 15.939 15.765 16.109 -1.2722 15 9 2 0 0 0 1.1344 1 2494 2494 0.0013812 0 1 563200 + 39761 19589 26596 26612 39066 39066 0.08827700174333586 RVPYNRRHY 9 Unmodified _RVPYNRRHY_ 0 0 0 TDO2|p.M171I|1|0.43|ENSG00000151790|chr4:155910106-155910106|G/A|missense_variant;ENSG00000151790|ENST00000536354|TDO2 TDO2|p.M171I|1|0.43|ENSG00000151790|chr4:155910106-155910106|G/A|missense_variant TDO2|p.M171I|1|0.43|ENSG00000151790|chr4:155910106-155910106|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7606201171875 2 630.839062 1259.66357 NaN NaN NaN NaN NaN NaN NaN 118.02 1 113.41 112.91 113.91 -4.6106 0 0 0 0.1963 1 22649 22649 0.073264 0 1 39762 4889 26597 26613 39067 39067 0.04412668191480407 RVQVWHVKK 9 Unmodified _RVQVWHVKK_ 0 0 0 REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.25927734375 2 590.359099 1178.70365 NaN NaN NaN NaN NaN NaN NaN 30.776 1 28.702 28.202 29.202 -2.0743 0 0 0 0.19626 1 5281 5281 0.0033805 0 1 + 39763 21338 26598 26614 39068 39068 0.12144214862018998 RVREEEIEVDS 11 Unmodified _RVREEEIEVDS_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000477977.1_1_10:103920762-103923575:+|nuORF ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7474670410156 3 454.228284 1359.66302 0.10639 4.8326E-05 -0.26584 -0.00012075 -0.15944 -7.2424E-05 454.2282066280905 39.325 0.2784 36.92 36.789 37.068 -2.4049 11 7 2 0 0 0 0.96072 1 6997 6997 5.0475 0 1 549630 39764 5701 26599 26615 39069 39069 -0.002422608295773898 RVRFWDSWRQW 11 Unmodified _RVRFWDSWRQW_ 0 0 0 ENST00000303319.9_1_2:150444183-150444282:-|nuORF ENST00000303319.9_1_2:150444183-150444282:-|nuORF ENST00000303319.9_1_2:150444183-150444282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2776489257812 3 541.276014 1620.80621 NaN NaN NaN NaN NaN NaN NaN 75.958 1 75.958 75.458 76.458 0 0 0 0 0.22632 1 14759 14759 0.50596 0 1 39765 8585 26600 26616 39070 39070 0.020642558628424013 RVRFWDSWRQW 11 Unmodified _RVRFWDSWRQW_ 0 0 0 ENST00000303319.9_1_2:150444183-150444282:-|nuORF ENST00000303319.9_1_2:150444183-150444282:-|nuORF ENST00000303319.9_1_2:150444183-150444282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2758178710938 3 541.276014 1620.80621 NaN NaN NaN NaN NaN NaN NaN 153.29 1 153.29 152.79 153.79 0 0 0 0 0.22632 1 30711 30711 0.50596 0.47975 1 39766 8585 26600 26616 39071 39071 0.020642558628424013 RVRFWDSWRQW 11 Unmodified _RVRFWDSWRQW_ 0 0 0 ENST00000303319.9_1_2:150444183-150444282:-|nuORF ENST00000303319.9_1_2:150444183-150444282:-|nuORF ENST00000303319.9_1_2:150444183-150444282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2753295898438 3 541.276014 1620.80621 NaN NaN NaN NaN NaN NaN NaN 108.59 1 104.27 103.77 104.77 -4.32 0 0 0 0.22632 1 21399 21399 0.172 0 1 39767 8585 26600 26616 39072 39072 0.020642558628424013 RVRFWDSWRQW 11 Unmodified _RVRFWDSWRQW_ 0 0 0 ENST00000303319.9_1_2:150444183-150444282:-|nuORF ENST00000303319.9_1_2:150444183-150444282:-|nuORF ENST00000303319.9_1_2:150444183-150444282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.274169921875 3 541.276014 1620.80621 NaN NaN NaN NaN NaN NaN NaN 113.47 1 108.94 108.44 109.44 -4.5259 0 0 0 0.22632 1 21784 21784 0.172 0.077159 1 39768 8585 26600 26616 39073 39073 0.020642558628424013 RVRLFTDWWER 11 Unmodified _RVRLFTDWWER_ 0 0 0 FUT7|p.R314W|1|0.57|ENSG00000180549|chr9:137030799-137030799|G/A|missense_variant FUT7|p.R314W|1|0.57|ENSG00000180549|chr9:137030799-137030799|G/A|missense_variant FUT7|p.R314W|1|0.57|ENSG00000180549|chr9:137030799-137030799|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.277587890625 3 521.944153 1562.81063 0.31009 0.00016185 -1.5776 -0.00082343 -1.2675 -0.00066158 521.9433713867822 75.507 0.39314 71.874 71.608 72.001 -3.6337 19 10 2 0 0 0 0.82392 1 14323 14323 0.45452 0.046251 1 1830600 39769 11830 26601 26617 39074 39074 0.05173720285733907 RVSDINFTL 9 Unmodified _RVSDINFTL_ 0 0 0 nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2861328125 2 532.790381 1063.56621 0.091572 4.8789E-05 -0.15054 -8.0205E-05 -0.058967 -3.1417E-05 532.790409312829 132.51 1.0107 132.51 132.03 133.04 0 73 28 4 0 0 0 0.010532 3 26162 26155;26162;26272 103.35 38.118 1 45063000 39770 2560 26602 26618 39075;39076;39077 39076 0.036968414719467546 RVSDINFTL 9 Unmodified _RVSDINFTL_ 0 0 0 nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2760620117188 2 532.790381 1063.56621 0.45394 0.00024185 -0.54239 -0.00028898 -0.088458 -4.713E-05 532.7900981283391 137.02 1.0227 132.1 131.56 132.58 -4.9216 82 28 4 0 0 0 0.086188 1 26410 26410 65.235 9.058 1 50816000 39771 2560 26602 26618 39078 39078 0.036968414719467546 RVSDINFTL 9 Unmodified _RVSDINFTL_ 0 0 0 nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 nc|ENSG00000110075|Q5H9R7-2|PPP6R3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2734985351562 2 532.790381 1063.56621 0.2865 0.00015265 -0.48384 -0.00025779 -0.19734 -0.00010514 532.790193504725 136.97 0.97495 132.13 131.72 132.7 -4.84 92 27 4 0 0 0 0.02633 2 26396 26396;26428 85.642 24.284 1 49497000 39772 2560 26602 26618 39079;39080 39079 0.036968414719467546 RVSKIKTIL 9 Unmodified _RVSKIKTIL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;ENST00000557060.1_1_14:64540716-64565614:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 353.2321472167969 3 353.241248 1056.70191 NaN NaN NaN NaN NaN NaN NaN 179.99 1 179.99 179.49 180.49 0 0 0 0 0.23508 1 37288 37288 0 0 1 39773 1266 26603 26619 39081 39081 0.17583161053448748 RVSLIGTSNAK 11 Unmodified _RVSLIGTSNAK_ 0 0 0 REV__ENSG00000184144|ENST00000331830|CNTN2 REV__ENSG00000184144|ENST00000331830|CNTN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 573.3365478515625 2 573.335487 1144.65642 NaN NaN NaN NaN NaN NaN NaN 94.84 1 90.79 90.29 91.29 -4.0496 0 0 0 0.23429 1 18588 18588 4.897 0.141 1 + 39774 18880 26604 26620 39082 39082 0.08987890800381138 RVSVRVCP 8 Unmodified _RVSVRVCP_ 0 0 0 REV__ENST00000608648.1_1_19:18220994-18239762:+|nuORF REV__ENST00000608648.1_1_19:18220994-18239762:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.7645263671875 2 458.263279 914.512005 0.26844 0.00012302 1.1426 0.0005236 1.411 0.00064661 458.2637698293015 166.76 0.79346 166.76 166.34 167.13 0 33 22 2 0 0 0 8448 1 33952 33952 3.2813 0 1 37691000 + 39775 23481 26605 26621 39083 39083 0.05132970839395057 RVVGSLKLKLL 11 Unmodified _RVVGSLKLKLL_ 0 0 0 REV__MOK|p.P350L|1|0.26|ENSG00000080823|chr14:102229590-102229590|G/A|missense_variant REV__MOK|p.P350L|1|0.26|ENSG00000080823|chr14:102229590-102229590|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 613.2017822265625 2 613.421365 1224.82818 NaN NaN NaN NaN NaN NaN NaN 166.44 1 166.44 165.94 166.94 0 0 0 0 0.23698 1 33908 33908 1.1933 0.12188 1 + 39776 23871 26606 26622 39084 39084 0.224756675586832 RVVKALEEAH 10 Unmodified _RVVKALEEAH_ 0 0 0 REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF;REV__nc|ENSG00000100065|Q9BWT7-2|CARD10 REV__nc|ENSG00000100065|Q9BWT7-2|CARD10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3317260742188 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 127.67 1 127.67 127.17 128.17 0 0 0 0 2.8426 1 25203 25203 3.8763 0 1 + 39777 23967;22271 26607 26623 39085 39085 0.0765590814596635 RVVKKTHFGTT 11 Unmodified _RVVKKTHFGTT_ 0 0 0 REV__USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant REV__USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2526550292969 3 425.250695 1272.73025 NaN NaN NaN NaN NaN NaN NaN 177.18 1 172.3 171.8 172.8 -4.8739 0 0 0 0.23698 1 35256 35256 0.40827 0 1 + 39778 15779 26608 26624 39086 39086 0.10479858962685284 RVVPVLLLL 9 Unmodified _RVVPVLLLL_ 0 0 0 REV__ENST00000421092.1_1_20:58517212-58517281:+|nuORF REV__ENST00000421092.1_1_20:58517212-58517281:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 341.2439880371094 3 341.242589 1020.70594 NaN NaN NaN NaN NaN NaN NaN 143.08 1 138.05 137.55 138.55 -5.0261 0 0 0 0.23508 1 27583 27583 0 0 1 + 39779 21507 26609 26625 39087 39087 0.1964125054713577 RVVQKRPKRIR 11 Unmodified _RVVQKRPKRIR_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 718.5325317382812 2 718.47586 1434.93717 NaN NaN NaN NaN NaN NaN NaN 168.52 1 163.73 163.23 164.23 -4.7898 0 0 0 0.23698 1 34068 34068 1.1933 0.88631 1 39780 5053 26610 26626 39088 39088 0.2370969130154208 RVWEDRPSSA 10 Unmodified _RVWEDRPSSA_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000443451.6_1_12:124809950-124819187:-|nuORF;nc|ENSG00000196498|Q9Y618-2|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3014526367188 2 601.799269 1201.58398 0.64832 0.00039016 0.68652 0.00041315 1.3348 0.00080331 601.8004941675902 31.265 0.31538 29.239 29.093 29.409 -2.0264 15 8 3 0 0 0 0.52446 1 5398 5398 25.997 8.5548 1 939750 39781 7273 26611 26627 39089 39089 -0.00874443273187353 RVWEDRPSSA 10 Unmodified _RVWEDRPSSA_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000443451.6_1_12:124809950-124819187:-|nuORF;nc|ENSG00000196498|Q9Y618-2|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.30078125 2 601.799269 1201.58398 0.57407 0.00034548 0.022584 1.3591E-05 0.59666 0.00035907 601.7993562819222 31.433 0.35193 29.285 29.057 29.409 -2.1483 17 9 2 0 0 0 0.63016 1 5412 5412 24.882 11.267 1 772300 39782 7273 26611 26627 39090 39090 -0.00874443273187353 RVWRQLCHPRL 11 Unmodified _RVWRQLCHPRL_ 0 0 0 ENST00000552897.5_1_12:113659258-113698227:+|nuORF ENST00000552897.5_1_12:113659258-113698227:+|nuORF ENST00000552897.5_1_12:113659258-113698227:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 367.2110595703125 4 366.709574 1462.80919 -0.20451 -7.4997E-05 -0.46068 -0.00016894 -0.66519 -0.00024393 366.7093781330575 142.7 0.90274 142.7 142.41 143.31 0 60 25 3 0 0 0 0.54604 1 28479 28479 8.5636 1.9332 1 5632100 39783 11201 26612 26628 39091 39091 0.09629807716009964 RVWRQLCHPRL 11 Unmodified _RVWRQLCHPRL_ 0 0 0 ENST00000552897.5_1_12:113659258-113698227:+|nuORF ENST00000552897.5_1_12:113659258-113698227:+|nuORF ENST00000552897.5_1_12:113659258-113698227:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 366.709574 1462.80919 -0.20451 -7.4997E-05 -0.46068 -0.00016894 -0.66519 -0.00024393 366.7093781330575 142.7 0.90274 142.7 142.41 143.31 0 0 0 NaN 8.5636 60 25 3 NaN NaN NaN NaN 0 NaN NaN 0 5632100 39784 11201 26612 26628 0.09629807716009964 RVYVIGVRIW 10 Unmodified _RVYVIGVRIW_ 0 0 0 REV__ENST00000482284.5_1_1:155580039-155581071:+|nuORF REV__ENST00000482284.5_1_1:155580039-155581071:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7530517578125 2 630.882407 1259.75026 NaN NaN NaN NaN NaN NaN NaN 175.8 1 170.9 170.4 171.4 -4.9008 0 0 0 0.22588 1 35042 35042 1.4819 0.28856 1 + 39785 22187 26613 26629 39092 39092 0.13077654693302065 RWAPWLIQQWW 11 Unmodified _RWAPWLIQQWW_ 0 0 0 REV__ENST00000078429.8_1_19:3123337-3123766:+|nuORF REV__ENST00000078429.8_1_19:3123337-3123766:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4107055664062 2 785.409321 1568.80409 NaN NaN NaN NaN NaN NaN NaN 41.27 1 38.73 38.23 39.23 -2.5398 0 0 0 0.23698 1 7410 7410 0.30703 0 1 + 39786 19973 26614 26630 39093 39093 0.04243827125014832 RWAPWLIQQWW 11 Unmodified _RWAPWLIQQWW_ 0 0 0 REV__ENST00000078429.8_1_19:3123337-3123766:+|nuORF REV__ENST00000078429.8_1_19:3123337-3123766:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.409912109375 2 785.409321 1568.80409 NaN NaN NaN NaN NaN NaN NaN 108.76 1 104.31 103.81 104.81 -4.4518 0 0 0 0.23698 1 20872 20872 0.35063 0.043601 1 + 39787 19973 26614 26630 39094 39094 0.04243827125014832 RWCWSRWA 8 Unmodified _RWCWSRWA_ 0 0 0 REV__ENST00000394697.6_1_16:50322145-50324440:+|nuORF REV__ENST00000394697.6_1_16:50322145-50324440:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 384.0224914550781 3 384.183627 1149.52905 NaN NaN NaN NaN NaN NaN NaN 6.7442 1 5.7294 5.2294 6.2294 -1.0148 0 0 0 0.21486 1 475 475 0.40072 0.16487 1 + 39788 21249 26615 26631 39095 39095 -0.03973108554805549 RWDRQASY 8 Unmodified _RWDRQASY_ 0 0 0 ENST00000481274.1_1_3:49062288-49062724:-|nuORF ENST00000481274.1_1_3:49062288-49062724:-|nuORF ENST00000481274.1_1_3:49062288-49062724:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2843627929688 2 541.262322 1080.51009 0.21369 0.00011566 -0.63087 -0.00034147 -0.41718 -0.0002258 541.2622193787894 78.021 0.67569 74.557 74.181 74.857 -3.4633 44 16 4 0 0 0 0.52597 1 15188 15188 26.884 4.1474 1 4150600 39789 10371 26616 26632 39096 39096 -0.02694366644868751 RWDRQASY 8 Unmodified _RWDRQASY_ 0 0 0 ENST00000481274.1_1_3:49062288-49062724:-|nuORF ENST00000481274.1_1_3:49062288-49062724:-|nuORF ENST00000481274.1_1_3:49062288-49062724:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2627563476562 2 541.262322 1080.51009 0.05226 2.8286E-05 -0.48323 -0.00026155 -0.43097 -0.00023327 541.2624301843427 78.396 0.66638 74.63 74.248 74.914 -3.7664 40 18 3 0 0 0 0.25515 2 14862 14836;14862 39.957 0.0076237 1 3981500 39790 10371 26616 26632 39097;39098 39098 -0.02694366644868751 RWDRQASY 8 Unmodified _RWDRQASY_ 0 0 0 ENST00000481274.1_1_3:49062288-49062724:-|nuORF ENST00000481274.1_1_3:49062288-49062724:-|nuORF ENST00000481274.1_1_3:49062288-49062724:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.277587890625 2 541.262322 1080.51009 0.10118 5.4766E-05 0.36308 0.00019652 0.46427 0.00025129 541.2629069865609 78.189 1.155 74.53 74.129 75.284 -3.6588 43 16 3 0 0 0 0.17453 2 14894 14864;14894 48.346 4.5735 1 5026600 39791 10371 26616 26632 39099;39100 39100 -0.02694366644868751 RWFLHIVKLSF 11 Unmodified _RWFLHIVKLSF_ 0 0 0 REV__ENST00000379103.7_1_17:26206084-26206336:-|nuORF REV__ENST00000379103.7_1_17:26206084-26206336:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.5191345214844 4 362.215858 1444.83433 0.0074616 2.7027E-06 -0.60018 -0.00021739 -0.59272 -0.00021469 362.2157402386065 20.252 0.2387 18.855 18.76 18.998 -1.3966 12 6 3 0 0 0 0.66234 1 3403 3403 0.50596 0 1 539650 + 39792 21130 26617 26633 39101 39101 0.12970185790209143 RWIFWLWWRAC 11 Unmodified _RWIFWLWWRAC_ 0 0 0 ENSG00000268104|ENST00000598581|SLC6A14 ENSG00000268104|ENST00000598581|SLC6A14 ENSG00000268104|ENST00000598581|SLC6A14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2652587890625 3 541.611569 1621.81288 NaN NaN NaN NaN NaN NaN NaN 62.089 1 62.089 61.589 62.589 0 0 0 0 0.22632 1 11919 11919 0.026206 0 1 39793 7994 26618 26634 39102 39102 0.026844774898563628 RWIPSIPPL 9 Unmodified _RWIPSIPPL_ 0 0 0 nc|ENSG00000125804|Q5T1J6|FAM182A nc|ENSG00000125804|Q5T1J6|FAM182A nc|ENSG00000125804|Q5T1J6|FAM182A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.217041015625 3 360.218443 1077.6335 NaN NaN NaN NaN NaN NaN NaN 123.49 1 123.49 122.99 123.99 0 0 0 0 0.23508 1 24343 24343 5.2969 0.39987 1 39794 12307 26619 26635 39103 39103 0.09778916473578647 RWKPRWRLWQW 11 Unmodified _RWKPRWRLWQW_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 566.8779296875 3 566.647782 1696.92152 0.28739 0.00016285 4.2365 0.0024006 4.5239 0.0025634 566.651670787333 157.45 0.20871 157.45 157.31 157.52 0 7 5 2 0 0 0 0.89136 1 31609 31609 0 0 1 1755600 + 39795 24768 26620 26636 39104 39104 0.10093404784493032 RWKQYEAYVQA 11 Unmodified _RWKQYEAYVQA_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2451477050781 3 481.245609 1440.715 NaN NaN NaN NaN NaN NaN NaN 25.288 1 23.639 23.139 24.139 -1.6482 0 0 0 0.22632 1 4435 4435 0.03141 0.0052036 1 39796 4656 26621 26637 39105 39105 0.012269473748574455 RWKRGPQA 8 Unmodified _RWKRGPQA_ 0 0 0 REV__ENST00000514829.5_1_4:187065816-187079198:+|nuORF REV__ENST00000514829.5_1_4:187065816-187079198:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.9990234375 3 333.52627 997.556982 -0.32695 -0.00010905 -0.83524 -0.00027857 -1.1622 -0.00038762 333.52590824620194 33.747 0.37551 31.43 31.288 31.664 -2.3175 19 10 2 0 0 0 1.0278 1 6203 6203 1.4819 0.41044 1 886680 + 39797 15176 26622 26638 39106 39106 0.05810537696936535 RWKRWFKFRK 10 Unmodified _RWKRWFKFRK_ 0 0 0 nc|ENSG00000164542|Q8NCT3|MATCAP2 nc|ENSG00000164542|Q8NCT3|MATCAP2 nc|ENSG00000164542|Q8NCT3|MATCAP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 513.3042602539062 3 513.305357 1536.89424 NaN NaN NaN NaN NaN NaN NaN 164.3 1 159.51 159.01 160.01 -4.7898 0 0 0 2.8426 1 32826 32826 0.043787 0.043223 1 39798 12425 26623 26639 39107 39107 0.1472692124407331 RWKRYRRWMK 10 Unmodified _RWKRYRRWMK_ 0 0 0 ENSG00000059769|ENST00000313525|DNAJC25;nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF ENSG00000059769|ENST00000313525|DNAJC25 ENSG00000059769|ENST00000313525|DNAJC25 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.25927734375 3 522.629734 1564.86737 0.36454 0.00019052 -2.7837 -0.0014548 -2.4191 -0.0012643 522.6280322006254 145.79 0.31296 140.79 140.67 140.98 -5 11 8 2 0 0 0 0.91149 1 28228 28228 0.69767 0.19171 1 4682100 39799 1301 26624 26640 39108 39108 0.10753489361241009 RWLLIRFKREF 11 Unmodified _RWLLIRFKREF_ 0 0 0 ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15 ENSG00000121749|ENST00000485960|TBC1D15 ENSG00000121749|ENST00000485960|TBC1D15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2701416015625 3 521.980539 1562.91979 0.43058 0.00022476 -3.383 -0.0017659 -2.9524 -0.0015411 521.9782602114688 153.13 0.10942 147.91 147.86 147.97 -5.2209 4 2 2 0 0 0 0.66298 1 29677 29677 0.026206 0 1 722880 39800 3190 26625 26641 39109 39109 0.16084350975825146 RWLLLKLLLL 10 Unmodified _RWLLLKLLLL_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.1903076171875 4 320.975876 1279.8744 -1.758 -0.00056428 -0.02697 -8.6566E-06 -1.785 -0.00057293 320.9749690453033 18.846 1.2544 17.211 16.9 18.154 -1.6351 45 35 2 0 0 0 0.91149 1 2986 2986 0 0 1 159020 39801 2824 26626 26642 39110 39110 0.24565732460791878 RWLMAMLILG 10 Unmodified _RWLMAMLILG_ 0 0 0 REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2993774414062 2 602.340672 1202.66679 NaN NaN NaN NaN NaN NaN NaN 141.9 1 137.03 136.53 137.53 -4.8678 0 0 0 0.22588 1 27378 27378 6.7232 1.4263 1 + 39802 18673 26627 26643 39111 39111 0.07356458929598375 RWLSFCKF 8 Unmodified _RWLSFCKF_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7800903320312 2 543.781305 1085.54806 NaN NaN NaN NaN NaN NaN NaN 44.101 1 41.353 40.853 41.853 -2.7475 0 0 0 0.23782 1 7975 7975 0.12286 0.049601 1 39803 4896 26628 26644 39112 39112 0.008704280162419309 RWLSFCKF 8 Unmodified _RWLSFCKF_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7827758789062 2 543.781305 1085.54806 NaN NaN NaN NaN NaN NaN NaN 153.39 1 148.17 147.67 148.67 -5.2209 0 0 0 0.23487 1 29730 29730 0.62683 0.21856 1 39804 4896 26628 26644 39113 39113 0.008704280162419309 RWLSLLWRRRR 11 Unmodified _RWLSLLWRRRR_ 0 0 0 REV__ENST00000531211.1_1_8:70772071-70772629:-|nuORF REV__ENST00000531211.1_1_8:70772071-70772629:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2695922851562 3 533.326932 1596.95897 NaN NaN NaN NaN NaN NaN NaN 119.25 1 119.25 118.75 119.75 0 0 0 0 0.22632 1 23497 23497 0 0 1 + 39805 22766 26629 26645 39114 39114 0.18436496050071582 RWLSWLLI 8 Unmodified _RWLSWLLI_ 0 0 0 REV__MLT1B_dup948|chr1:201401334-201401734:-|1.062852436806843|0.1940662173317227|2.45|478.0|4|1|sense REV__MLT1B_dup948|chr1:201401334-201401734:-|1.062852436806843|0.1940662173317227|2.45|478.0|4|1|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7938842773438 2 543.826569 1085.63859 NaN NaN NaN NaN NaN NaN NaN 149.24 1 149.24 148.74 149.74 0 0 0 0 0.21486 1 29876 29876 8.5933 0.98433 1 + 39806 23861 26630 26646 39115 39115 0.09919220336178114 RWLWRFEGRYF 11 Unmodified _RWLWRFEGRYF_ 0 0 0 REV__nc|ENSG00000152620|Q4G0N4-3|NADK2 REV__nc|ENSG00000152620|Q4G0N4-3|NADK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3003845214844 4 404.712477 1614.8208 -0.040899 -1.6552E-05 0.79574 0.00032204 0.75484 0.00030549 404.9633372586133 19.621 0.21272 18.225 18.029 18.242 -1.3966 8 5 2 0 0 0 0.96228 1 3238 3238 0 0 1 415460 + 39807 17116 26631 26647 39116 39116 0.03798328010975638 RWLWRFEGRYF 11 Unmodified _RWLWRFEGRYF_ 0 0 0 REV__nc|ENSG00000152620|Q4G0N4-3|NADK2 REV__nc|ENSG00000152620|Q4G0N4-3|NADK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 404.712477 1614.8208 -0.33012 -0.0001336 2.0423 0.00082653 1.7121 0.00069293 404.71319080323394 19.418 0.24638 18.093 17.968 18.214 -1.3251 -0.064773 3.5288E-05 NaN 0 12 6 3 NaN NaN NaN NaN 0 NaN NaN 0 755150 + 39808 17116 26631 26647 0.03798328010975638 RWLWRFEGRYF 11 Unmodified _RWLWRFEGRYF_ 0 0 0 REV__nc|ENSG00000152620|Q4G0N4-3|NADK2 REV__nc|ENSG00000152620|Q4G0N4-3|NADK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 404.712477 1614.8208 -1.4436 -0.00058423 2.602 0.0010531 1.1584 0.00046883 404.9641473483872 19.79 0.21157 18.155 18.049 18.261 -1.6351 -0.0025701 0.00094143 NaN 0 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 442620 + 39809 17116 26631 26647 0.03798328010975638 RWLWWQPWWW 10 Unmodified _RWLWWQPWWW_ 0 0 0 chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1;chr12:54282820-54283827|481|25.33|0.0|21.27|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7847900390625 3 543.934929 1628.78296 NaN NaN NaN NaN NaN NaN NaN 122.84 1 122.84 122.34 123.34 0 0 0 0 2.8426 1 24212 24212 0.69767 0.19171 1 39810 532 26632 26648 39117 39117 -0.00628138183833471 RWLWWQPWWW 10 Unmodified _RWLWWQPWWW_ 0 0 0 chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1;chr12:54282820-54283827|481|25.33|0.0|21.27|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 544.046142578125 3 543.934929 1628.78296 NaN NaN NaN NaN NaN NaN NaN 170.62 1 170.62 170.12 171.12 0 0 0 0 2.8426 1 35094 35094 0.13989 0.13989 1 39811 532 26632 26648 39118 39118 -0.00628138183833471 RWLWWQPWWW 10 Unmodified _RWLWWQPWWW_ 0 0 0 chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1;chr12:54282820-54283827|481|25.33|0.0|21.27|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.777099609375 3 543.934929 1628.78296 NaN NaN NaN NaN NaN NaN NaN 63.596 1 60.599 60.099 61.099 -2.9975 0 0 0 0.22588 1 12292 12292 0.62683 0.54348 1 39812 532 26632 26648 39119 39119 -0.00628138183833471 RWMQEWKMKWL 11 Unmodified _RWMQEWKMKWL_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27490234375 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 58.54 1 55.629 55.129 56.129 -2.9105 0 0 0 0.22632 1 11247 11247 0.00056442 0 1 + 39813 23786 26633 26649 39120 39120 0.020173768270979053 RWMQEWKMKWL 11 Unmodified _RWMQEWKMKWL_ 0 0 0 REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant REV__LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2647094726562 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 158.5 1 153.23 152.73 153.73 -5.2712 0 0 0 0.22632 1 30753 30753 0.50596 0 1 + 39814 23786 26633 26649 39121 39121 0.020173768270979053 RWNQFWTIVQ 10 Unmodified _RWNQFWTIVQ_ 0 0 0 REV__LBX1|p.R176W|1|0.25|ENSG00000138136|chr10:101227590-101227590|G/A|missense_variant REV__LBX1|p.R176W|1|0.25|ENSG00000138136|chr10:101227590-101227590|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 459.906494140625 3 459.906928 1376.69895 NaN NaN NaN NaN NaN NaN NaN 9.4533 1 8.4187 7.9187 8.9187 -1.0347 0 0 0 0.22588 1 966 966 0.15932 0 1 + 39815 23790 26634 26650 39122 39122 0.02567285928603269 RWNVQWRKRRR 11 Unmodified _RWNVQWRKRRR_ 0 0 0 REV__ENST00000546876.1_1_12:114395740-114397707:-|nuORF REV__ENST00000546876.1_1_12:114395740-114397707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 821.1397094726562 2 820.97709 1639.93963 NaN NaN NaN NaN NaN NaN NaN 174.77 1 174.77 174.27 175.27 0 0 0 0 0.23698 1 36189 36189 0.26902 0.26902 1 + 39816 22900 26635 26651 39123 39123 0.14525539759142703 RWPPARARRS 10 Unmodified _RWPPARARRS_ 0 0 0 REV__ENST00000528318.5_1_8:42716773-42751856:-|nuORF REV__ENST00000528318.5_1_8:42716773-42751856:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 418.242431640625 3 418.242645 1251.70611 NaN NaN NaN NaN NaN NaN NaN 122.92 1 118.19 117.69 118.69 -4.731 0 0 0 2.8426 1 23614 23614 0.043787 0 1 + 39817 22722 26636 26652 39124 39124 0.09032063319682493 RWQQRQEWRER 11 Unmodified _RWQQRQEWRER_ 0 0 0 REV__ENSG00000136378|ENST00000388820|ADAMTS7;REV__ENST00000565793.5_1_15:79069566-79092863:-|nuORF REV__ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 553.78955078125 3 553.285461 1656.83455 0.24221 0.00013401 0.017066 9.4424E-06 0.25928 0.00014346 553.2841935063104 153.2 0.18199 148.43 148.33 148.51 -4.7684 7 4 2 0 0 0 0.89136 1 30457 30457 0 0 1 1315900 + 39818 16326;23115 26637 26653 39125 39125 0.03240953772115063 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4129028320312 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 129.24 1 129.24 128.74 129.74 0 0 0 0 0.23698 1 25530 25530 0.30703 0.30703 1 39819 10712 26638 26654 39126 39126 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4071655273438 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 167.91 1 167.91 167.41 168.41 0 0 0 0 0.22632 1 34343 34343 0 0 1 39820 10712 26638 26654 39127 39127 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4071655273438 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 167.92 1 167.92 167.42 168.42 0 0 0 0 0.23698 1 34345 34345 0.30703 0.03801 1 39821 10712 26638 26654 39128 39128 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3956909179688 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 173.85 1 173.85 173.35 174.35 0 0 0 0 0.23698 1 35968 35968 1.1933 1.1933 1 39822 10712 26638 26654 39129 39129 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3942260742188 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 177.84 1 177.84 177.34 178.34 0 0 0 0 0.22632 1 36840 36840 0 0 1 39823 10712 26638 26654 39130 39130 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3942260742188 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 177.85 1 177.85 177.35 178.35 0 0 0 0 0.23698 1 36842 36842 0 0 1 39824 10712 26638 26654 39131 39131 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.380615234375 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 177.88 1 177.88 177.38 178.38 0 0 0 0 0.23698 1 36853 36853 0.30703 0.30703 1 39825 10712 26638 26654 39132 39132 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.39013671875 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 169.2 1 164.41 163.91 164.91 -4.7898 0 0 0 0.22632 1 34257 34257 0 0 1 39826 10712 26638 26654 39133 39133 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.39013671875 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 169.21 1 164.42 163.92 164.92 -4.7898 0 0 0 0.23698 1 34261 34261 1.3295 1.0937 1 39827 10712 26638 26654 39134 39134 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3798828125 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 169.28 1 164.49 163.99 164.99 -4.7898 0 0 0 0.23698 1 34281 34281 0 0 1 39828 10712 26638 26654 39135 39135 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3836059570312 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 173.67 1 168.88 168.38 169.38 -4.7898 0 0 0 0.23698 1 35442 35442 0 0 1 39829 10712 26638 26654 39136 39136 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.401123046875 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 164.4 1 159.36 158.86 159.86 -5.0446 0 0 0 0.23698 1 32057 32057 0.26902 0.26902 1 39830 10712 26638 26654 39137 39137 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.39501953125 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 169.7 1 164.83 164.33 165.33 -4.873 0 0 0 0.23698 1 33535 33535 0 0 1 39831 10712 26638 26654 39138 39138 0.06606438394055658 RWQVERRRWQW 11 Unmodified _RWQVERRRWQW_ 0 0 0 ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3790893554688 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 169.72 1 164.85 164.35 165.35 -4.873 0 0 0 0.23698 1 33541 33541 0 0 1 39832 10712 26638 26654 39139 39139 0.06606438394055658 RWQWWSWRGCN 11 Unmodified _RWQWWSWRGCN_ 0 0 0 ENST00000473880.5_1_7:102112843-102113359:+|nuORF ENST00000473880.5_1_7:102112843-102113359:+|nuORF ENST00000473880.5_1_7:102112843-102113359:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2684326171875 3 522.238683 1563.69422 NaN NaN NaN NaN NaN NaN NaN 109.87 1 105.49 104.99 105.99 -4.3776 0 0 0 0.22632 1 21651 21651 0.00056442 0 1 39833 10248 26639 26655 39140 39140 -0.06507921485808765 RWRAHYQRLQR 11 Unmodified _RWRAHYQRLQR_ 0 0 0 CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.383544921875 2 785.434724 1568.85489 NaN NaN NaN NaN NaN NaN NaN 147.2 1 142.2 141.7 142.7 -5 0 0 0 0.22632 1 28492 28492 0.50596 0.47975 1 39834 754 26640 26656 39141 39141 0.09322169222582488 RWRAPKRRR 9 Unmodified _RWRAPKRRR_ 0 0 0 REV__ENST00000545932.5_1_12:108956369-108956426:+|nuORF REV__ENST00000545932.5_1_12:108956369-108956426:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 428.1416320800781 3 427.934034 1280.78027 NaN NaN NaN NaN NaN NaN NaN 6.5941 1 5.5495 5.0495 6.0495 -1.0446 0 0 0 0.23508 1 466 466 0 0 1 + 39835 22891 26641 26657 39142 39142 0.15111451201846648 RWRCHVQRFFY 11 Unmodified _RWRCHVQRFFY_ 0 0 0 nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2689208984375 3 533.270095 1596.78845 NaN NaN NaN NaN NaN NaN NaN 35.502 1 35.502 35.002 36.002 0 0 0 0 0.22632 1 6520 6520 0.172 0.14579 1 39836 6457 26642 26658 39143 39143 0.013932173363173206 RWREWSKWFEL 11 Unmodified _RWREWSKWFEL_ 0 0 0 REV__GLP1R|p.R414W|1|0.33|ENSG00000112164|chr6:39085921-39085921|C/T|missense_variant REV__GLP1R|p.R414W|1|0.33|ENSG00000112164|chr6:39085921-39085921|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2619018554688 3 541.612404 1621.81538 0.31288 0.00016946 1.4138 0.00076573 1.7267 0.00093519 541.9489995312342 135.01 0.13536 135.01 134.92 135.05 0 5 3 2 0 0 0 0.96227 1 26732 26732 0.094841 0.094841 1 1562300 + 39837 23577 26643 26659 39144 39144 0.029346044284693562 RWRFTCYYYYT 11 Unmodified _RWRFTCYYYYT_ 0 0 0 nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3;nc|ENSG00000244482|Q6PI73|LILRA6 nc|ENSG00000204577|O75022|LILRB3 nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3632202148438 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 97.204 1 97.204 96.704 97.704 0 0 0 0 0.23698 1 19048 19048 0.30703 0.30703 1 39838 7591 26644 26660 39145 39145 -0.06716125842785914 RWRFTCYYYYT 11 Unmodified _RWRFTCYYYYT_ 0 0 0 nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3;nc|ENSG00000244482|Q6PI73|LILRA6 nc|ENSG00000204577|O75022|LILRB3 nc|ENSG00000204577|O75022|LILRB3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2737426757812 3 541.246733 1620.71837 0.30484 0.00016499 -4.1456 -0.0022438 -3.8407 -0.0020788 541.5786759453362 134.93 0.1051 134.93 134.85 134.95 0 4 2 2 0 0 0 0.89134 1 26720 26720 0.094841 0.094841 1 1805500 39839 7591 26644 26660 39146 39146 -0.06716125842785914 RWRFTCYYYYT 11 Unmodified _RWRFTCYYYYT_ 0 0 0 nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3;nc|ENSG00000244482|Q6PI73|LILRA6 nc|ENSG00000204577|O75022|LILRB3 nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3685302734375 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 60.347 1 57.033 56.533 57.533 -3.3139 0 0 0 0.22632 1 11238 11238 0.00056442 0.00056442 1 39840 7591 26644 26660 39147 39147 -0.06716125842785914 RWRFTCYYYYT 11 Unmodified _RWRFTCYYYYT_ 0 0 0 nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3;nc|ENSG00000244482|Q6PI73|LILRA6 nc|ENSG00000204577|O75022|LILRB3 nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3665771484375 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 72.383 1 68.756 68.256 69.256 -3.6275 0 0 0 0.22632 1 13670 13670 0 0 1 39841 7591 26644 26660 39148 39148 -0.06716125842785914 RWRFTCYYYYT 11 Unmodified _RWRFTCYYYYT_ 0 0 0 nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3;nc|ENSG00000244482|Q6PI73|LILRA6 nc|ENSG00000204577|O75022|LILRB3 nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3645629882812 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 158.5 1 153.22 152.72 153.72 -5.2748 0 0 0 0.23698 1 30760 30760 0.30703 0.30703 1 39842 7591 26644 26660 39149 39149 -0.06716125842785914 RWRGERLRRHF 11 Unmodified _RWRGERLRRHF_ 0 0 0 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.693115234375 3 523.630903 1567.87088 NaN NaN NaN NaN NaN NaN NaN 158.03 1 153.24 152.74 153.74 -4.7952 0 0 0 0.23698 1 31427 31427 0.45452 0.046251 1 39843 7956 26645 26661 39150 39150 0.10965875459487506 RWRGERLRRHF 11 Unmodified _RWRGERLRRHF_ 0 0 0 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.685546875 3 523.630903 1567.87088 NaN NaN NaN NaN NaN NaN NaN 158.11 1 153.32 152.82 153.82 -4.7952 0 0 0 0.22632 1 31441 31441 0.172 0.14579 1 39844 7956 26645 26661 39151 39151 0.10965875459487506 RWRGERLRRHF 11 Unmodified _RWRGERLRRHF_ 0 0 0 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6845092773438 3 523.630903 1567.87088 NaN NaN NaN NaN NaN NaN NaN 158.86 1 153.59 153.09 154.09 -5.2748 0 0 0 0.23698 1 30836 30836 0.094841 0 1 39845 7956 26645 26661 39152 39152 0.10965875459487506 RWRHVRPS 8 Unmodified _RWRHVRPS_ 0 0 0 ENST00000259512.8_1_8:124054423-124054528:-|nuORF ENST00000259512.8_1_8:124054423-124054528:-|nuORF ENST00000259512.8_1_8:124054423-124054528:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7804565429688 2 547.309941 1092.60533 NaN NaN NaN NaN NaN NaN NaN 13.232 1 12.111 11.611 12.611 -1.1206 0 0 0 0.2396 1 1654 1654 0.30703 0 1 39846 8274 26646 26662 39153 39153 0.06273031336831991 RWRIRSELRHR 11 Unmodified _RWRIRSELRHR_ 0 0 0 INPP4A|p.Q346Afs*26|1|0.06|ENSG00000040933|chr2:98546054-98546055|-/G|frameshift_variant INPP4A|p.Q346Afs*26|1|0.06|ENSG00000040933|chr2:98546054-98546055|-/G|frameshift_variant INPP4A|p.Q346Afs*26|1|0.06|ENSG00000040933|chr2:98546054-98546055|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2745361328125 3 522.306308 1563.89709 NaN NaN NaN NaN NaN NaN NaN 95.036 1 91.155 90.655 91.655 -3.881 0 0 0 0.22632 1 18235 18235 0.58532 0 1 39847 11945 26647 26663 39154 39154 0.13770144630962022 RWRKFVRYV 9 Unmodified _RWRKFVRYV_ 0 0 0 REV__ENSG00000183654|ENST00000332432|MARCHF11 REV__ENSG00000183654|ENST00000332432|MARCHF11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2209167480469 3 437.259524 1308.75674 NaN NaN NaN NaN NaN NaN NaN 32.811 1 30.632 30.132 31.132 -2.1791 0 0 0 0.19622 1 5697 5697 0.073264 0.029476 1 + 39848 18847 26648 26664 39155 39155 0.11471592644693374 RWRKRWRWRRY 11 Unmodified _RWRKRWRWRRY_ 0 0 0 ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2811279296875 3 602.345097 1804.01346 NaN NaN NaN NaN NaN NaN NaN 111.46 1 111.46 110.96 111.96 0 0 0 0 0.22632 1 21926 21926 0.026206 0.026206 1 39849 10693 26649 26665 39156 39156 0.14361507921512384 RWRKRWRWRRY 11 Unmodified _RWRKRWRWRRY_ 0 0 0 ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2888793945312 3 602.345097 1804.01346 NaN NaN NaN NaN NaN NaN NaN 130.3 1 130.3 129.8 130.8 0 0 0 0 0.22632 1 25754 25754 0 0 1 39850 10693 26649 26665 39157 39157 0.14361507921512384 RWRKRWRWRRY 11 Unmodified _RWRKRWRWRRY_ 0 0 0 ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2846069335938 3 602.345097 1804.01346 NaN NaN NaN NaN NaN NaN NaN 153.19 1 153.19 152.69 153.69 0 0 0 0 0.22632 1 30691 30691 0 0 1 39851 10693 26649 26665 39158 39158 0.14361507921512384 RWRKRWRWRRY 11 Unmodified _RWRKRWRWRRY_ 0 0 0 ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2802734375 3 602.345097 1804.01346 NaN NaN NaN NaN NaN NaN NaN 172.62 1 172.62 172.12 173.12 0 0 0 0 0.22632 1 35643 35643 0 0 1 39852 10693 26649 26665 39159 39159 0.14361507921512384 RWRKRWRWRRY 11 Unmodified _RWRKRWRWRRY_ 0 0 0 ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.295166015625 3 602.345097 1804.01346 NaN NaN NaN NaN NaN NaN NaN 163.98 1 158.94 158.44 159.44 -5.0446 0 0 0 0.22632 1 31941 31941 0 0 1 39853 10693 26649 26665 39160 39160 0.14361507921512384 RWRKRWRWRRY 11 Unmodified _RWRKRWRWRRY_ 0 0 0 ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2793579101562 3 602.345097 1804.01346 NaN NaN NaN NaN NaN NaN NaN 144.7 1 139.76 139.26 140.26 -4.9445 0 0 0 0.22632 1 27957 27957 0.026206 0.026206 1 39854 10693 26649 26665 39161 39161 0.14361507921512384 RWRLERHDRG 10 Unmodified _RWRLERHDRG_ 0 0 0 ENST00000263269.3_1_19:48917790-48922905:+|nuORF ENST00000263269.3_1_19:48917790-48922905:+|nuORF ENST00000263269.3_1_19:48917790-48922905:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.93701171875 3 460.916709 1379.7283 NaN NaN NaN NaN NaN NaN NaN 10.797 1 9.8934 9.3934 10.393 -0.90401 0 0 0 0.22588 1 1382 1382 0.12286 0.028024 1 39855 8322 26650 26666 39162 39162 0.053622429974439 RWRQLTSVIYK 11 Unmodified _RWRQLTSVIYK_ 0 0 0 REV__nc|ENSG00000161040|Q8NEE6-4|FBXL13 REV__nc|ENSG00000161040|Q8NEE6-4|FBXL13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 483.90716552734375 3 483.949016 1448.82522 NaN NaN NaN NaN NaN NaN NaN 79.829 1 79.829 79.329 80.329 0 0 0 0 0.22632 1 15537 15537 0.172 0 1 + 39856 17449 26651 26667 39163 39163 0.11875792433875176 RWRQWRKMQKR 11 Unmodified _RWRQWRKMQKR_ 0 0 0 REV__ENST00000216456.6_1_14:68126581-68129225:-|nuORF REV__ENST00000216456.6_1_14:68126581-68129225:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 553.603271484375 3 553.647677 1657.9212 NaN NaN NaN NaN NaN NaN NaN 166.27 1 161.32 160.82 161.82 -4.9484 0 0 0 0.23698 1 32563 32563 0.073264 0 1 + 39857 20015 26652 26668 39164 39164 0.11855661792947103 RWRRHQQECLW 11 Unmodified _RWRRHQQECLW_ 0 0 0 REV__MTHFD1L|p.R339C|1|0.21|ENSG00000120254|chr6:150922235-150922235|C/T|missense_variant REV__MTHFD1L|p.R339C|1|0.21|ENSG00000120254|chr6:150922235-150922235|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2684326171875 3 533.268754 1596.78443 NaN NaN NaN NaN NaN NaN NaN 135.62 1 130.73 130.23 131.23 -4.8951 0 0 0 0.22632 1 26056 26056 0.50596 0 1 + 39858 23887 26653 26669 39165 39165 0.00991127842644346 RWRRWRWRWP 10 Unmodified _RWRRWRWRWP_ 0 0 0 REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7723999023438 3 547.635988 1639.88614 NaN NaN NaN NaN NaN NaN NaN 80.825 1 76.986 76.486 77.486 -3.8392 0 0 0 0.22588 1 15342 15342 0.69767 0.55777 1 + 39859 20118 26654 26670 39166 39166 0.09178787047312653 RWRSGGRWWM 10 Unmodified _RWRSGGRWWM_ 0 0 0 ENST00000320230.9_1_11:796095-796233:-|nuORF ENST00000320230.9_1_11:796095-796233:-|nuORF ENST00000320230.9_1_11:796095-796233:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 459.8862609863281 3 459.896369 1376.66728 NaN NaN NaN NaN NaN NaN NaN 9.7762 1 8.982 8.482 9.482 -0.79424 0 0 0 0.22588 1 1162 1162 0 0 1 39860 8706 26655 26671 39167 39167 -0.00598985306328359 RWRTRWGRRLW 11 Unmodified _RWRTRWGRRLW_ 0 0 0 REV__ENST00000431489.5_1_2:62933068-62933182:+|nuORF REV__ENST00000431489.5_1_2:62933068-62933182:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7907104492188 3 543.643031 1627.90726 0.33305 0.00018106 3.5115 0.001909 3.8445 0.0020901 543.9797077761875 128.01 0.28419 128.01 127.86 128.14 0 9 7 2 0 0 0 0.89074 1 25255 25255 1.4551 1.2831 1 2693000 + 39861 21621 26656 26672 39168 39168 0.1184275235621044 RWRTTKKLKLI 11 Unmodified _RWRTTKKLKLI_ 0 0 0 ENST00000583350.1_1_18:14377547-14378720:-|nuORF ENST00000583350.1_1_18:14377547-14378720:-|nuORF ENST00000583350.1_1_18:14377547-14378720:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2473449707031 3 481.648789 1441.92454 NaN NaN NaN NaN NaN NaN NaN 42.589 1 39.938 39.438 40.438 -2.651 0 0 0 0.22632 1 7671 7671 0.50596 0.33396 1 39862 11514 26657 26673 39169 39169 0.22125235118642195 RWRWRWRWCWA 11 Unmodified _RWRWRWRWCWA_ 0 0 0 REV__SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant REV__SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.228271484375 4 437.721744 1746.85787 -0.26679 -0.00011678 -1.5395 -0.00067387 -1.8063 -0.00079065 437.7210813408887 20.742 0.2415 19.357 19.202 19.444 -1.3847 12 6 2 0 0 0 0.96227 1 3207 3207 0.094841 0.094841 1 674020 + 39863 24661 26658 26674 39170 39170 0.014317210757553767 RWRWRWRWCWA 11 Unmodified _RWRWRWRWCWA_ 0 0 0 REV__SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant REV__SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 437.721744 1746.85787 0.24837 0.00010872 -2.0234 -0.0008857 -1.7751 -0.00077698 437.72073265095815 20.936 0.35176 19.461 19.314 19.665 -1.4742 0.052054 -0.00041918 NaN 0.094841 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1312600 + 39864 24661 26658 26674 0.014317210757553767 RWRWVCLHLRR 11 Unmodified _RWRWVCLHLRR_ 0 0 0 ENST00000420902.1_1_22:50006877-50007000:-|nuORF ENST00000420902.1_1_22:50006877-50007000:-|nuORF ENST00000420902.1_1_22:50006877-50007000:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 528.003173828125 3 527.633367 1579.87827 -0.72806 -0.00038415 -0.050532 -2.6662E-05 -0.77859 -0.00041081 527.6332822381323 12.709 0.13891 11.699 11.625 11.764 -1.0098 7 3 3 0 0 0 0.66313 1 1798 1798 0 0 1 392810 39865 9663 26659 26675 39171 39171 0.11152891735537196 RWRWWRNGWKV 11 Unmodified _RWRWWRNGWKV_ 0 0 0 REV__nc|ENSG00000171160|Q8NDC4-2|MORN4 REV__nc|ENSG00000171160|Q8NDC4-2|MORN4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7860717773438 3 543.960249 1628.85892 0.20366 0.00011078 2.0366 0.0011078 2.2403 0.0012186 543.9628022873056 132.11 0.1071 127.47 127.38 127.48 -4.6399 4 2 2 0 0 0 0.89092 1 26019 26019 0.094841 0 1 806300 + 39866 24164 26660 26676 39172 39172 0.06964258716288896 RWSDVAGQ 8 Unmodified _RWSDVAGQ_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2 REV__ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2265625 2 459.725041 917.435529 -0.15247 -7.0092E-05 0.53784 0.00024726 0.38537 0.00017717 459.725183749016 47.624 0.74071 44.755 44.495 45.236 -2.869 40 20 3 0 0 0 0.72935 1 8990 8990 10.074 10.074 1 3250300 + 39867 14106 26661 26677 39173 39173 -0.026491294562333678 RWSFFDTK 8 Unmodified _RWSFFDTK_ 0 0 0 REV__ENST00000409556.5_1_2:86705773-86709083:+|nuORF REV__ENST00000409556.5_1_2:86705773-86709083:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7713012695312 2 543.771991 1085.52943 NaN NaN NaN NaN NaN NaN NaN 80.166 1 80.166 79.666 80.666 0 0 0 0 0.20462 1 15608 15608 21.747 0.20967 1 + 39868 21415 26662 26678 39174 39174 -0.009914103539813368 RWSFRSEWWPK 11 Unmodified _RWSFRSEWWPK_ 0 0 0 REV__ENST00000482462.1_1_7:540672-552294:-|nuORF REV__ENST00000482462.1_1_7:540672-552294:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.266845703125 3 522.265115 1563.77352 NaN NaN NaN NaN NaN NaN NaN 15.972 1 15.972 15.472 16.472 0 0 0 0 0.22632 1 2464 2464 0.50596 0.41111 1 + 39869 22190 26663 26679 39175 39175 0.014180487399926278 RWSSRMTWWWF 11 Unmodified _RWSSRMTWWWF_ 0 0 0 nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-4|HMCN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7797241210938 3 543.590834 1627.75067 NaN NaN NaN NaN NaN NaN NaN 15.712 1 14.496 13.996 14.996 -1.2159 0 0 0 0.22632 1 2437 2437 0 0 1 39870 12377 26664 26680 39176 39176 -0.03809293649146639 RWVFFFFF 8 Unmodified _RWVFFFFF_ 0 0 0 REV__ENST00000401990.5_1_2:242256943-242257661:+|nuORF REV__ENST00000401990.5_1_2:242256943-242257661:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 598.3079833984375 2 598.308013 1194.60147 NaN NaN NaN NaN NaN NaN NaN 179.6 1 174.69 174.19 175.19 -4.9114 0 0 0 0.21486 1 35837 35837 0 0 1 + 39871 21362 26665 26681 39177 39177 0.011955487904060647 RWWFRRLFLIF 11 Unmodified _RWWFRRLFLIF_ 0 0 0 ENST00000281830.3_1_2:223918801-223918864:+|nuORF ENST00000281830.3_1_2:223918801-223918864:+|nuORF ENST00000281830.3_1_2:223918801-223918864:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.748779296875 3 547.317262 1638.92996 0.00075458 4.1299E-07 0.41226 0.00022564 0.41301 0.00022605 547.3173593336126 104.39 0.65157 100.17 99.857 100.51 -4.2183 58 18 4 0 0 0 0.66298 1 20491 20491 0.094841 0.094841 1 4460100 39872 8444 26666 26682 39178 39178 0.13604958701102987 RWWFRRLFLIF 11 Unmodified _RWWFRRLFLIF_ 0 0 0 ENST00000281830.3_1_2:223918801-223918864:+|nuORF ENST00000281830.3_1_2:223918801-223918864:+|nuORF ENST00000281830.3_1_2:223918801-223918864:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.786865234375 3 547.317262 1638.92996 0.17944 9.8211E-05 0.11027 6.0352E-05 0.28971 0.00015856 547.6515647681032 104.54 0.86104 100.2 99.833 100.69 -4.346 58 24 3 0 0 0 0.66313 1 20075 20075 0.0072825 0.0072825 1 5330900 39873 8444 26666 26682 39179 39179 0.13604958701102987 RWWFRRLFLIF 11 Unmodified _RWWFRRLFLIF_ 0 0 0 ENST00000281830.3_1_2:223918801-223918864:+|nuORF ENST00000281830.3_1_2:223918801-223918864:+|nuORF ENST00000281830.3_1_2:223918801-223918864:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7720336914062 3 547.317262 1638.92996 0.78492 0.0004296 -0.41367 -0.00022641 0.37125 0.00020319 547.3169324060034 104.32 0.88459 100.27 99.735 100.62 -4.0543 53 24 3 0 0 0 0.89134 1 20089 20089 0.094841 0.094841 1 4624300 39874 8444 26666 26682 39180 39180 0.13604958701102987 RWWRLLRFRLP 11 Unmodified _RWWRLLRFRLP_ 0 0 0 REV__ENST00000393313.5_1_7:127032353-127032743:-|nuORF REV__ENST00000393313.5_1_7:127032353-127032743:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2749633789062 3 533.656278 1597.947 0.42051 0.00022441 0.92397 0.00049308 1.3445 0.00071749 533.9901530901062 136.46 0.10461 131.57 131.52 131.62 -4.8951 4 2 2 0 0 0 0.96227 1 26224 26224 0.094841 0.094841 1 1015400 + 39875 21234 26667 26683 39181 39181 0.17194879306885014 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.495361328125 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 107.26 1 107.26 106.76 107.76 0 0 0 0 0.23698 1 21090 21090 0 0 1 + 39876 21016 26668 26684 39182 39182 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.495849609375 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 116.35 1 116.35 115.85 116.85 0 0 0 0 0.23698 1 22909 22909 0 0 1 + 39877 21016 26668 26684 39183 39183 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4950561523438 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 161.92 1 161.92 161.42 162.42 0 0 0 0 0.23698 1 32527 32527 0 0 1 + 39878 21016 26668 26684 39184 39184 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4957275390625 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 151.66 1 146.91 146.41 147.41 -4.7523 0 0 0 0.23698 1 30136 30136 0 0 1 + 39879 21016 26668 26684 39185 39185 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.495849609375 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 177.49 1 172.7 172.2 173.2 -4.7898 0 0 0 0.23698 1 36301 36301 0 0 1 + 39880 21016 26668 26684 39186 39186 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4951782226562 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 88.576 1 84.581 84.081 85.081 -3.9953 0 0 0 0.23698 1 16874 16874 0 0 1 + 39881 21016 26668 26684 39187 39187 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.465087890625 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 163.9 1 158.85 158.35 159.35 -5.0446 0 0 0 0.22632 1 31921 31921 0.026206 0.026206 1 + 39882 21016 26668 26684 39188 39188 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4959106445312 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 135.57 1 130.74 130.24 131.24 -4.8307 0 0 0 0.23698 1 26100 26100 0 0 1 + 39883 21016 26668 26684 39189 39189 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4957275390625 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 142.39 1 137.49 136.99 137.99 -4.8982 0 0 0 0.23698 1 27474 27474 0.30703 0.30703 1 + 39884 21016 26668 26684 39190 39190 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.494873046875 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 154.28 1 149.06 148.56 149.56 -5.2209 0 0 0 0.23698 1 29909 29909 0 0 1 + 39885 21016 26668 26684 39191 39191 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4948120117188 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 175.25 1 170.35 169.85 170.85 -4.8916 0 0 0 0.23698 1 34927 34927 0.30703 0.30703 1 + 39886 21016 26668 26684 39192 39192 0.171083546072623 RWWRSTAFSTA 11 Unmodified _RWWRSTAFSTA_ 0 0 0 KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant KLHDC7A|p.R608Afs*130|1|0.13|ENSG00000179023|chr1:18482799-18482799|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 456.8949890136719 3 456.898432 1367.67347 NaN NaN NaN NaN NaN NaN NaN 10.412 1 10.412 9.9117 10.912 0 0 0 0 0.23698 1 1300 1300 0.08335 0 1 39887 12006 26669 26685 39193 39193 0.004338114061965825 RWYEEYDQYTD 11 Unmodified _RWYEEYDQYTD_ 0 0 0 REV__ENSG00000064703|ENST00000369702|DDX20 REV__ENSG00000064703|ENST00000369702|DDX20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69287109375 3 523.216044 1566.6263 NaN NaN NaN NaN NaN NaN NaN 105.75 1 105.75 105.25 106.25 0 0 0 0 0.22632 1 20783 20783 0.50596 0.47975 1 + 39888 14173 26670 26686 39194 39194 -0.13434557446134932 RWYFHQLHRRV 11 Unmodified _RWYFHQLHRRV_ 0 0 0 REV__ENST00000520594.5_1_8:106799777-107072670:-|nuORF REV__ENST00000520594.5_1_8:106799777-107072670:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2716674804688 3 533.291887 1596.85383 NaN NaN NaN NaN NaN NaN NaN 108.2 1 108.2 107.7 108.7 0 0 0 0 0.22632 1 21276 21276 0.50596 0.36606 1 + 39889 22636 26671 26687 39195 39195 0.07927954853653318 RWYFRLRKQYT 11 Unmodified _RWYFRLRKQYT_ 0 0 0 REV__ENSG00000117215|ENST00000375105|PLA2G2D REV__ENSG00000117215|ENST00000375105|PLA2G2D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 539.5731811523438 3 539.631798 1615.87356 NaN NaN NaN NaN NaN NaN NaN 163.43 1 158.36 157.86 158.86 -5.0648 0 0 0 0.22632 1 31801 31801 0.026206 0 1 + 39890 15516 26672 26688 39196 39196 0.09026286073753909 RWYYFRMVNRM 11 Unmodified _RWYYFRMVNRM_ 0 0 0 REV__ENST00000335790.7_1_11:8245870-8245915:-|nuORF REV__ENST00000335790.7_1_11:8245870-8245915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2713623046875 3 541.267474 1620.78059 NaN NaN NaN NaN NaN NaN NaN 21.878 1 20.404 19.904 20.904 -1.4742 0 0 0 0.22632 1 3719 3719 0.026206 0 1 + 39891 20661 26673 26689 39197 39197 -0.004966779754795425 RWYYFRMVNRM 11 Unmodified _RWYYFRMVNRM_ 0 0 0 REV__ENST00000335790.7_1_11:8245870-8245915:-|nuORF REV__ENST00000335790.7_1_11:8245870-8245915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2677001953125 3 541.267474 1620.78059 NaN NaN NaN NaN NaN NaN NaN 178.24 1 173.33 172.83 173.83 -4.9088 0 0 0 0.22632 1 35554 35554 0.094841 0.087559 1 + 39892 20661 26673 26689 39198 39198 -0.004966779754795425 RYCLISSTPYK 11 Unmodified _RYCLISSTPYK_ 0 0 0 ENST00000513903.5_2_5:36606752-36608440:+|nuORF ENST00000513903.5_2_5:36606752-36608440:+|nuORF ENST00000513903.5_2_5:36606752-36608440:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 444.2229919433594 3 444.232312 1329.67511 NaN NaN NaN NaN NaN NaN NaN 107.28 1 107.28 106.78 107.78 0 0 0 0 0.22632 1 21094 21094 5.4027 1.5264 1 39893 10767 26674 26690 39199 39199 0.023456843799294802 RYEMLATRPTR 11 Unmodified _RYEMLATRPTR_ 0 0 0 REV__KAT5|p.Q172Rfs*41|1|0.35|ENSG00000172977|chr11:65713657-65713657|T/-|frameshift_variant REV__KAT5|p.Q172Rfs*41|1|0.35|ENSG00000172977|chr11:65713657-65713657|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2518005371094 3 465.250477 1392.7296 NaN NaN NaN NaN NaN NaN NaN 48.426 1 45.557 45.057 46.057 -2.869 0 0 0 0.22632 1 9161 9161 3.0723 0 1 + 39894 23695 26675 26691 39200 39200 0.0489469625131278 RYEMLATRPTR 11 Unmodified _RYEMLATRPTR_ 0 0 0 REV__KAT5|p.Q172Rfs*41|1|0.35|ENSG00000172977|chr11:65713657-65713657|T/-|frameshift_variant REV__KAT5|p.Q172Rfs*41|1|0.35|ENSG00000172977|chr11:65713657-65713657|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24981689453125 3 465.250477 1392.7296 NaN NaN NaN NaN NaN NaN NaN 48.522 1 45.523 45.023 46.023 -2.999 0 0 0 0.22632 1 8862 8862 3.0723 0 1 + 39895 23695 26675 26691 39201 39201 0.0489469625131278 RYENHAKLVEN 11 Unmodified _RYENHAKLVEN_ 0 0 0 REV__GLIPR2|p.P28Hfs*2|1|0.1|ENSG00000122694|chr9:36147850-36147850|C/-|frameshift_variant REV__GLIPR2|p.P28Hfs*2|1|0.1|ENSG00000122694|chr9:36147850-36147850|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22552490234375 3 458.237114 1371.68951 NaN NaN NaN NaN NaN NaN NaN 51.076 1 51.076 50.576 51.576 0 0 0 0 0.22632 1 9683 9683 3.0723 3.0409 1 + 39896 15700 26676 26692 39202 39202 0.018534728523945887 RYFHWRRSYA 10 Unmodified _RYFHWRRSYA_ 0 0 0 nc|ENSG00000196371|P22083-2|FUT4;ENSG00000196371|ENST00000358752|FUT4 nc|ENSG00000196371|P22083-2|FUT4 nc|ENSG00000196371|P22083-2|FUT4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24444580078125 3 481.246055 1440.71634 NaN NaN NaN NaN NaN NaN NaN 109.38 1 109.38 108.88 109.88 0 0 0 0 2.8426 1 21508 21508 1.9064 0.45126 1 39897 7262 26677 26693 39203 39203 0.013606262542907643 RYFIWYSIVF 10 Unmodified _RYFIWYSIVF_ 0 0 0 REV__ENST00000382038.6_1_5:34908748-34908856:-|nuORF REV__ENST00000382038.6_1_5:34908748-34908856:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24847412109375 3 465.248291 1392.72304 NaN NaN NaN NaN NaN NaN NaN 175.12 1 175.12 174.62 175.62 0 0 0 0 2.8426 1 36284 36284 0.043787 0 1 + 39898 21174 26678 26694 39204 39204 0.042391263622448605 RYGRSWESY 9 Unmodified _RYGRSWESY_ 0 0 0 nc|ENSG00000234414|P0DJD3-3|RBMY1A1;nc|ENSG00000244395|P0C7P1-2|RBMY1D;nc|ENSG00000234414|P0DJD3-2|RBMY1A1;nc|ENSG700|P0DJD4|RBMY1C;ENSG00000244395|ENST00000382680|RBMY1D;ENSG00000242875|ENST00000383020|RBMY1B;ENSG00000242389|ENST00000382659|RBMY1E;ENSG00000234414|ENST00000382707|RBMY1A1;ENSG00000226941|ENST00000250831|RBMY1J;ENSG00000169800|ENST00000303766|RBMY1F nc|ENSG00000234414|P0DJD3-3|RBMY1A1 nc|ENSG00000234414|P0DJD3-3|RBMY1A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2758178710938 2 602.280712 1202.54687 NaN NaN NaN NaN NaN NaN NaN 92.255 1 88.16 87.66 88.66 -4.0946 0 0 0 0.23508 1 17573 17573 12.532 0.89125 1 39899 6008 26679 26695 39205 39205 -0.04630114818974107 RYHHLPGE 8 Unmodified _RYHHLPGE_ 0 0 0 REV__ENST00000464381.5_1_17:15935612-15961439:-|nuORF REV__ENST00000464381.5_1_17:15935612-15961439:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.8043212890625 3 336.838514 1007.49371 -0.071646 -2.4133E-05 -1.3005 -0.00043805 -1.3721 -0.00046218 336.838096103854 23.104 0.84554 21.651 21.19 22.035 -1.4535 83 23 5 0 0 0 8448 1 3758 3758 6.2058 5.3306 1 1381700 + 39900 16610 26680 26696 39206 39206 -0.009734478109635347 RYHPMDYYWWL 11 Unmodified _RYHPMDYYWWL_ 0 0 0 ENSG00000161267|ENST00000392379|BDH1 ENSG00000161267|ENST00000392379|BDH1 ENSG00000161267|ENST00000392379|BDH1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.36669921875 2 815.369004 1628.72345 NaN NaN NaN NaN NaN NaN NaN 149.86 1 144.66 144.16 145.16 -5.1994 0 0 0 0.22632 1 29032 29032 0.094841 0 1 39901 5288 26681 26697 39207 39207 -0.06575821980186447 RYHPMDYYWWL 11 Unmodified _RYHPMDYYWWL_ 0 0 0 ENSG00000161267|ENST00000392379|BDH1 ENSG00000161267|ENST00000392379|BDH1 ENSG00000161267|ENST00000392379|BDH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3716430664062 2 815.369004 1628.72345 NaN NaN NaN NaN NaN NaN NaN 79.474 1 75.798 75.298 76.298 -3.676 0 0 0 0.23698 1 15141 15141 0.35063 0 1 39902 5288 26681 26697 39208 39208 -0.06575821980186447 RYHRYMYIYLY 11 Unmodified _RYHRYMYIYLY_ 0 0 0 REV__ENST00000515408.5_1_5:112353398-112353584:+|nuORF REV__ENST00000515408.5_1_5:112353398-112353584:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7843627929688 3 547.606261 1639.79695 0.21438 0.0001174 -0.92609 -0.00050713 -0.71171 -0.00038974 547.607137319275 129.43 0.14078 124.8 124.74 124.88 -4.6292 5 3 2 0 0 0 0.89074 1 25497 25497 0.58532 0.55911 1 1035000 + 39903 22588 26682 26698 39209 39209 0.0026472646231923136 RYIANTVEL 9 Unmodified _RYIANTVEL_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 101.28 1 97.125 96.625 97.625 -4.1594 0 0 0 0.23508 1 19910 19910 4.897 0 1 39904 3046 26683 26699 39210 39210 0.0461712798901317 RYIANTVEL 9 Unmodified _RYIANTVEL_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 106.68 1 102.42 101.92 102.92 -4.2638 0 0 0 0.23508 1 21002 21002 8.1555 0 1 39905 3046 26683 26699 39211 39211 0.0461712798901317 RYIANTVEL 9 Unmodified _RYIANTVEL_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 107.13 1 102.81 102.31 103.31 -4.32 0 0 0 0.23508 1 21094 21094 8.1555 0 1 39906 3046 26683 26699 39212 39212 0.0461712798901317 RYIVIKKKR 9 Unmodified _RYIVIKKKR_ 0 0 0 tr|U7T2K7|U7T2K7_FUSNUSpoIIIJ-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00740PE=4SV=1 tr|U7T2K7|U7T2K7_FUSNUSpoIIIJ-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00740PE=4SV=1 tr|U7T2K7|U7T2K7_FUSNUSpoIIIJ-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00740PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2908935546875 2 602.40605 1202.79755 NaN NaN NaN NaN NaN NaN NaN 21.133 1 19.748 19.248 20.248 -1.3847 0 0 0 0.19635 1 3312 3312 0 0 1 39907 26369 26684 26700 39213 39213 0.2042593396427037 RYKFLFFLIRY 11 Unmodified _RYKFLFFLIRY_ 0 0 0 REV__ENST00000503787.5_1_5:54460591-54460681:+|nuORF REV__ENST00000503787.5_1_5:54460591-54460681:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.276611328125 3 522.63789 1564.89184 0.20488 0.00010708 -1.3573 -0.0007094 -1.1525 -0.00060232 522.6366096630605 158.2 0.10736 158.2 158.15 158.26 0 4 2 2 0 0 0 0.96224 1 31766 31766 0.50596 0 1 2301600 + 39908 22456 26685 26701 39214 39214 0.1319902799580177 RYKFRTWRQLW 11 Unmodified _RYKFRTWRQLW_ 0 0 0 ENSG00000239900|ENST00000623063|ADSL;nc|ENSG00000239900|P30566-2|ADSL ENSG00000239900|ENST00000623063|ADSL ENSG00000239900|ENST00000623063|ADSL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 820.6116943359375 2 820.452051 1638.88955 NaN NaN NaN NaN NaN NaN NaN 174.9 1 174.9 174.4 175.4 0 0 0 0 0.22632 1 36223 36223 0.0059557 0 1 39909 7841 26686 26702 39215 39215 0.095659923106723 RYKHDHKRHEK 11 Unmodified _RYKHDHKRHEK_ 0 0 0 nc|ENSG00000205838|Q6PF05-3|TTC23L nc|ENSG00000205838|Q6PF05-3|TTC23L nc|ENSG00000205838|Q6PF05-3|TTC23L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 767.4112548828125 2 767.410914 1532.80728 NaN NaN NaN NaN NaN NaN NaN 33.514 1 33.514 33.014 34.014 0 0 0 0 0.23698 1 6119 6119 1.0715 0.72083 1 39910 12567 26687 26703 39216 39216 0.062184702317154006 RYKHFDWLYNR 11 Unmodified _RYKHFDWLYNR_ 0 0 0 SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant;SNX33|p.C435Afs*62|2|0.36|ENSG00000173548|chr15:75650395-75650395|C/-|frameshift_variant;ENSG00000173548|ENST00000308527|SNX33 SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2717895507812 3 533.27227 1596.79498 0.7103 0.00037878 0.74579 0.00039771 1.4561 0.00077649 533.2729284375151 30.327 0.20669 28.434 28.279 28.485 -1.8928 6 5 2 0 0 0 0.66234 1 5179 5179 0.50596 0 1 381330 39911 6301 26688 26704 39217 39217 0.02045433768694238 RYKHFDWLYNR 11 Unmodified _RYKHFDWLYNR_ 0 0 0 SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant;SNX33|p.C435Afs*62|2|0.36|ENSG00000173548|chr15:75650395-75650395|C/-|frameshift_variant;ENSG00000173548|ENST00000308527|SNX33 SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant SNX33|p.G409Afs*88|1|0.33|ENSG00000173548|chr15:75650323-75650323|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2726440429688 3 533.27227 1596.79498 NaN NaN NaN NaN NaN NaN NaN 48.008 1 45.066 44.566 45.566 -2.9421 0 0 0 0.22632 1 8761 8761 0.094841 0 1 39912 6301 26688 26704 39218 39218 0.02045433768694238 RYKIRHTKKKT 11 Unmodified _RYKIRHTKKKT_ 0 0 0 ENSG00000213973|ENST00000596209|ZNF99 ENSG00000213973|ENST00000596209|ZNF99 ENSG00000213973|ENST00000596209|ZNF99 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 486.9715576171875 3 486.972043 1457.8943 NaN NaN NaN NaN NaN NaN NaN 172.67 1 167.79 167.29 168.29 -4.881 0 0 0 0.22632 1 34290 34290 0.50596 0 1 39913 7712 26689 26705 39219 39219 0.18366876453433179 RYKLLGGL 8 Unmodified _RYKLLGGL_ 0 0 0 ENST00000487417.1_1_12:62415587-62415818:-|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF;ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3 ENST00000487417.1_1_12:62415587-62415818:-|nuORF ENST00000487417.1_1_12:62415587-62415818:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2911682128906 2 460.28982 918.565087 NaN NaN NaN NaN NaN NaN NaN 126.61 1 121.91 121.41 122.41 -4.6998 0 0 0 0.23711 1 24355 24355 0.62683 0 1 39914 4781 26690 26706 39220 39220 0.10254671893721934 RYKVSPEMNW 10 Unmodified _RYKVSPEMNW_ 0 0 0 ENST00000454583.6_1_2:152364320-152364476:+|nuORF ENST00000454583.6_1_2:152364320-152364476:+|nuORF ENST00000454583.6_1_2:152364320-152364476:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21630859375 3 437.216774 1308.62849 0.10264 4.4876E-05 0.17337 7.5802E-05 0.27601 0.00012068 437.2166938930513 121.62 0.38742 117.07 116.85 117.24 -4.5476 17 10 2 0 0 0 0.75099 1 23985 23985 5.4027 0.99656 1 1126900 39915 10014 26691 26707 39221 39221 -0.013477554513656287 RYKYLRRLFRF 11 Unmodified _RYKYLRRLFRF_ 0 0 0 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 539.9208374023438 3 539.987805 1616.94158 NaN NaN NaN NaN NaN NaN NaN 172.86 1 168.07 167.57 168.57 -4.7898 0 0 0 0.23698 1 35235 35235 0.08335 0.010087 1 39916 2856 26692 26708 39222 39222 0.15779155724408156 RYKYRRWRQW 10 Unmodified _RYKYRRWRQW_ 0 0 0 REV__nc|ENSG00000155542|Q8NE22-2|SETD9 REV__nc|ENSG00000155542|Q8NE22-2|SETD9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26806640625 3 533.291887 1596.85383 NaN NaN NaN NaN NaN NaN NaN 84.636 1 80.727 80.227 81.227 -3.9093 0 0 0 2.8426 1 16089 16089 0.69767 0.60282 1 + 39917 17218 26693 26709 39223 39223 0.07927954853676056 RYKYRRWRQWL 11 Unmodified _RYKYRRWRQWL_ 0 0 0 REV__nc|ENSG00000155542|Q8NE22-2|SETD9 REV__nc|ENSG00000155542|Q8NE22-2|SETD9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.8387145996094 5 342.994856 1709.9379 -0.5497 -0.00018854 3.4453 0.0011817 2.8956 0.00099319 343.1958389736526 15.722 0.24271 14.501 14.435 14.678 -1.2219 10 6 2 0 0 0 0.89136 1 2258 2258 0 0 1 297200 + 39918 17218 26694 26710 39224 39224 0.11132485950588489 RYLEERRWEER 11 Unmodified _RYLEERRWEER_ 0 0 0 REV__NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant REV__NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2783203125 3 541.277972 1620.81209 NaN NaN NaN NaN NaN NaN NaN 78.578 1 74.773 74.273 75.273 -3.8048 0 0 0 0.22632 1 14904 14904 0.094841 0 1 + 39919 24342 26695 26711 39225 39225 0.026513095838708978 RYLEERRWEER 11 Unmodified _RYLEERRWEER_ 0 0 0 REV__NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant REV__NCOA5|p.R175W|1|0.33|ENSG00000124160|chr20:46067161-46067161|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2789306640625 3 541.277972 1620.81209 NaN NaN NaN NaN NaN NaN NaN 99.787 1 95.815 95.315 96.315 -3.9719 0 0 0 0.22632 1 19163 19163 0.50596 0 1 + 39920 24342 26695 26711 39226 39226 0.026513095838708978 RYLIFKRP 8 Unmodified _RYLIFKRP_ 0 0 0 SYMPK|p.D701Y|1|0.39|ENSG00000125755|chr19:45827590-45827590|C/A|missense_variant SYMPK|p.D701Y|1|0.39|ENSG00000125755|chr19:45827590-45827590|C/A|missense_variant SYMPK|p.D701Y|1|0.39|ENSG00000125755|chr19:45827590-45827590|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 546.763671875 2 546.837468 1091.66038 NaN NaN NaN NaN NaN NaN NaN 173.45 1 173.45 172.95 173.95 0 0 0 0 0.23782 1 35871 35871 0.12286 0.093582 1 39921 25802 26696 26712 39227 39227 0.11822025084757115 RYLRASPQ 8 Unmodified _RYLRASPQ_ 0 0 0 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 330.99853515625 3 330.854164 989.540663 -0.36471 -0.00012066 -1.1139 -0.00036853 -1.4786 -0.0004892 330.85384876511284 43.404 0.42401 40.685 40.558 40.982 -2.7191 15 11 2 0 0 0 1.0158 1 8124 8124 10.074 0 1 1076500 + 39922 16743 26697 26713 39228 39228 0.045474117401681724 RYMKHKYMYHI 11 Unmodified _RYMKHKYMYHI_ 0 0 0 REV__nc|ENSG00000100600|Q99538-3|LGMN REV__nc|ENSG00000100600|Q99538-3|LGMN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3954467773438 2 785.394499 1568.77444 NaN NaN NaN NaN NaN NaN NaN 29.262 1 27.266 26.766 27.766 -1.9962 0 0 0 0.22632 1 4970 4970 0 0 1 + 39923 14725 26698 26714 39229 39229 0.012808037930426508 RYNFNRRYRRQ 11 Unmodified _RYNFNRRYRRQ_ 0 0 0 REV__ENSG00000065978|ENST00000321358|YBX1 REV__ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3710327148438 2 814.935088 1627.85562 NaN NaN NaN NaN NaN NaN NaN 174.28 1 169.4 168.9 169.9 -4.8845 0 0 0 0.22632 1 34621 34621 0.094841 0 1 + 39924 14196 26699 26715 39230 39230 0.06680963871622225 RYNHIVGC 8 Unmodified _RYNHIVGC_ 0 0 0 ENST00000367607.7_2_1:179924016-179959652:+|nuORF ENST00000367607.7_2_1:179924016-179959652:+|nuORF ENST00000367607.7_2_1:179924016-179959652:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2367858886719 2 481.237261 960.45997 NaN NaN NaN NaN NaN NaN NaN 118.62 1 114.21 113.71 114.71 -4.4088 0 0 0 0.2343 1 22823 22823 0.25148 0 1 39925 9077 26700 26716 39231 39231 -0.02184192574361532 RYQGLNFVKIR 11 Unmodified _RYQGLNFVKIR_ 0 0 0 REV__nc|ENSG00000158571|P16118-2|PFKFB1 REV__nc|ENSG00000158571|P16118-2|PFKFB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2481384277344 3 465.273611 1392.799 NaN NaN NaN NaN NaN NaN NaN 83.568 1 83.568 83.068 84.068 0 0 0 0 0.22632 1 16295 16295 0.50596 0 1 + 39926 24113 26701 26717 39232 39232 0.11831523262412702 RYQHDGSRNLI 11 Unmodified _RYQHDGSRNLI_ 0 0 0 ENSG00000095739|ENST00000375533|BAMBI;ENST00000497699.1_1_10:28970877-28971327:+|nuORF ENSG00000095739|ENST00000375533|BAMBI ENSG00000095739|ENST00000375533|BAMBI MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7568664550781 3 453.568975 1357.6851 -0.21369 -9.6925E-05 -0.62945 -0.0002855 -0.84315 -0.00038243 453.5686844748517 57.675 0.77165 54.781 54.309 55.08 -2.8944 41 21 3 0 0 0 0.88374 1 11061 11061 8.4443 3.0416 1 2428800 39927 1867 26702 26718 39233 39233 0.020560084295311754 RYQHEMEE 8 Unmodified _RYQHEMEE_ 0 0 0 sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1;sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1 sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 374.8552551269531 3 374.494196 1120.46076 -0.23897 -8.9494E-05 0.93434 0.00034991 0.69537 0.00026041 374.4943643245711 20.464 0.49472 19.079 18.88 19.375 -1.3847 23 13 2 0 0 0 0.89687 1 3145 3145 3.2813 1.3538 1 5164500 39928 25758 26703 26719 39234 39234 -0.09465442715986683 RYQHEMEE 8 Unmodified _RYQHEMEE_ 0 0 0 sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1;sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1 sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.494196 1120.46076 0.090597 3.3928E-05 0.43897 0.00016439 0.52957 0.00019832 374.4942312253703 20.6 0.39363 19.203 19.034 19.428 -1.3966 0.06183 -0.00017599 NaN 3.2813 20 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2479900 39929 25758 26703 26719 -0.09465442715986683 RYQKEKNVSIE 11 Unmodified _RYQKEKNVSIE_ 0 0 0 nc|ENSG00000164485|Q969J5-2|IL22RA2;ENSG00000164485|ENST00000296980|IL22RA2 nc|ENSG00000164485|Q969J5-2|IL22RA2 nc|ENSG00000164485|Q969J5-2|IL22RA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2519226074219 3 465.252652 1392.73613 NaN NaN NaN NaN NaN NaN NaN 144.21 1 139.14 138.64 139.64 -5.0671 0 0 0 0.22632 1 27813 27813 1.4551 1.4492 1 39930 12424 26704 26720 39235 39235 0.05546912683735172 RYQREDQWRYE 11 Unmodified _RYQREDQWRYE_ 0 0 0 REV__ENSG00000142961|ENST00000319928|MOB3C REV__ENSG00000142961|ENST00000319928|MOB3C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7781982421875 3 543.590327 1627.74915 NaN NaN NaN NaN NaN NaN NaN 13.651 1 12.478 11.978 12.978 -1.173 0 0 0 0.22632 1 1790 1790 0 0 1 + 39931 16696 26705 26721 39236 39236 -0.039612562042293575 RYRKYVYKYFL 11 Unmodified _RYRKYVYKYFL_ 0 0 0 REV__SLC8A1|p.G554Wfs*22|1|0.34|ENSG00000183023|chr2:40428621-40428622|-/A|frameshift_variant REV__SLC8A1|p.G554Wfs*22|1|0.34|ENSG00000183023|chr2:40428621-40428622|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2650146484375 3 533.632916 1597.87692 0.13317 7.1062E-05 -1.5264 -0.00081456 -1.3933 -0.0007435 533.6333809197731 142.13 0.13504 137.48 137.38 137.51 -4.6521 5 3 2 0 0 0 0.96225 1 28095 28095 0.45452 0.38125 1 3264600 + 39932 15541 26706 26722 39237 39237 0.10189536127768406 RYRNKTNN 8 Unmodified _RYRNKTNN_ 0 0 0 REV__PTPRH|p.A846T|1|0.17|ENSG00000080031|chr19:55187543-55187543|C/T|missense_variant REV__PTPRH|p.A846T|1|0.17|ENSG00000080031|chr19:55187543-55187543|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.276123046875 2 533.281046 1064.54754 NaN NaN NaN NaN NaN NaN NaN 147.23 1 142.55 142.05 143.05 -4.6868 0 0 0 0.23025 1 29209 29209 1.4551 0.24024 1 + 39933 24532 26707 26723 39238 39238 0.017847246207338685 RYRQIKEE 8 Unmodified _RYRQIKEE_ 0 0 0 REV__ADAMTS18|p.R651Gfs*51|1|0.31|ENSG00000140873|chr16:77325948-77325948|A/-|frameshift_variant REV__ADAMTS18|p.R651Gfs*51|1|0.31|ENSG00000140873|chr16:77325948-77325948|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21051025390625 3 374.540245 1120.59891 -0.60453 -0.00022642 2.7476 0.0010291 2.1431 0.00080267 374.8757077810522 14.915 0.13683 13.742 13.664 13.801 -1.173 7 3 3 0 0 0 8448 1 2058 2058 0.30703 0 1 137020 + 39934 12946 26708 26724 39239 39239 0.043430485948192654 RYTKEQDYRPK 11 Unmodified _RYTKEQDYRPK_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.386474609375 2 742.386239 1482.75793 NaN NaN NaN NaN NaN NaN NaN 23.829 1 22.041 21.541 22.541 -1.7886 0 0 0 0.22632 1 3851 3851 1.4551 0 1 39935 6931 26709 26725 39240 39240 0.03585717432247293 RYWARYLERVR 11 Unmodified _RYWARYLERVR_ 0 0 0 REV__ENSG00000184983|ENST00000498737|NDUFA6 REV__ENSG00000184983|ENST00000498737|NDUFA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6886596679688 3 523.291664 1566.85316 0.48956 0.00025618 -1.5975 -0.00083598 -1.108 -0.00057979 523.623528368928 159.68 0.17291 154.41 154.31 154.48 -5.2711 6 4 2 0 0 0 0.66234 1 30986 30986 0.50596 0 1 745780 + 39936 18926 26710 26726 39241 39241 0.09241115413965417 RYWGLRFVRTD 11 Unmodified _RYWGLRFVRTD_ 0 0 0 ENST00000377814.6_1_13:73302069-73305432:+|nuORF ENST00000377814.6_1_13:73302069-73305432:+|nuORF ENST00000377814.6_1_13:73302069-73305432:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26385498046875 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 58.961 1 58.961 58.461 59.461 0 0 0 0 0.22632 1 11292 11292 0.172 0 1 39937 9268 26711 26727 39242 39242 0.05834048739961872 RYWMQLRRERK 11 Unmodified _RYWMQLRRERK_ 0 0 0 REV__NDUFS7|p.I209M|1|0.37|ENSG00000115286|chr19:1395473-1395473|C/G|missense_variant REV__NDUFS7|p.I209M|1|0.37|ENSG00000115286|chr19:1395473-1395473|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2647705078125 3 541.300054 1620.87833 NaN NaN NaN NaN NaN NaN NaN 130.54 1 130.54 130.04 131.04 0 0 0 0 0.22632 1 25801 25801 1.4551 1.4546 1 + 39938 24347 26712 26728 39243 39243 0.09272846944850244 RYWMQLRRERK 11 Unmodified _RYWMQLRRERK_ 0 0 0 REV__NDUFS7|p.I209M|1|0.37|ENSG00000115286|chr19:1395473-1395473|C/G|missense_variant REV__NDUFS7|p.I209M|1|0.37|ENSG00000115286|chr19:1395473-1395473|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2691040039062 3 541.300054 1620.87833 NaN NaN NaN NaN NaN NaN NaN 125.95 1 121.35 120.85 121.85 -4.5984 0 0 0 0.22632 1 24830 24830 0.0059557 0 1 + 39939 24347 26712 26728 39244 39244 0.09272846944850244 RYWSQIII 8 Unmodified _RYWSQIII_ 0 0 0 REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2069396972656 3 360.206315 1077.59712 NaN NaN NaN NaN NaN NaN NaN 128.76 1 123.94 123.44 124.44 -4.817 0 0 0 0.23915 1 24717 24717 0.063987 0.063987 1 + 39940 13133 26713 26729 39245 39245 0.06142039576843672 RYWWCGYYRYN 11 Unmodified _RYWWCGYYRYN_ 0 0 0 ENST00000602591.1_1_6:30256646-30256907:-|nuORF ENST00000602591.1_1_6:30256646-30256907:-|nuORF ENST00000602591.1_1_6:30256646-30256907:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3570556640625 2 815.356428 1628.6983 NaN NaN NaN NaN NaN NaN NaN 141.55 1 136.9 136.4 137.4 -4.6493 0 0 0 0.22632 1 27963 27963 0 0 1 39941 11716 26714 26730 39246 39246 -0.09089876782741158 RYWWCGYYRYN 11 Unmodified _RYWWCGYYRYN_ 0 0 0 ENST00000602591.1_1_6:30256646-30256907:-|nuORF ENST00000602591.1_1_6:30256646-30256907:-|nuORF ENST00000602591.1_1_6:30256646-30256907:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.356689453125 2 815.356428 1628.6983 NaN NaN NaN NaN NaN NaN NaN 144.81 1 139.75 139.25 140.25 -5.0671 0 0 0 0.22632 1 27954 27954 0 0 1 39942 11716 26714 26730 39247 39247 -0.09089876782741158 RYWWCGYYRYN 11 Unmodified _RYWWCGYYRYN_ 0 0 0 ENST00000602591.1_1_6:30256646-30256907:-|nuORF ENST00000602591.1_1_6:30256646-30256907:-|nuORF ENST00000602591.1_1_6:30256646-30256907:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3567504882812 2 815.356428 1628.6983 NaN NaN NaN NaN NaN NaN NaN 133.96 1 129.14 128.64 129.64 -4.8175 0 0 0 0.22632 1 25789 25789 0 0 1 39943 11716 26714 26730 39248 39248 -0.09089876782741158 RYWWCGYYRYN 11 Unmodified _RYWWCGYYRYN_ 0 0 0 ENST00000602591.1_1_6:30256646-30256907:-|nuORF ENST00000602591.1_1_6:30256646-30256907:-|nuORF ENST00000602591.1_1_6:30256646-30256907:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.35693359375 2 815.356428 1628.6983 NaN NaN NaN NaN NaN NaN NaN 134.98 1 130.17 129.67 130.67 -4.8175 0 0 0 0.22632 1 25988 25988 0 0 1 39944 11716 26714 26730 39249 39249 -0.09089876782741158 RYWWCGYYRYN 11 Unmodified _RYWWCGYYRYN_ 0 0 0 ENST00000602591.1_1_6:30256646-30256907:-|nuORF ENST00000602591.1_1_6:30256646-30256907:-|nuORF ENST00000602591.1_1_6:30256646-30256907:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3568725585938 2 815.356428 1628.6983 NaN NaN NaN NaN NaN NaN NaN 150.46 1 145.34 144.84 145.84 -5.1204 0 0 0 0.22632 1 29160 29160 0 0 1 39945 11716 26714 26730 39250 39250 -0.09089876782741158 RYYDINRLWKG 11 Unmodified _RYYDINRLWKG_ 0 0 0 REV__nc|ENSG00000085224|P46100-2|ATRX REV__nc|ENSG00000085224|P46100-2|ATRX MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3917846679688 2 742.393867 1482.77318 NaN NaN NaN NaN NaN NaN NaN 165.72 1 160.77 160.27 161.27 -4.9484 0 0 0 0.23429 1 32402 32402 4.897 0.36815 1 + 39946 14471 26715 26731 39251 39251 0.05110629020100532 RYYGNYKDIHL 11 Unmodified _RYYGNYKDIHL_ 0 0 0 REV__MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|15|3|sense REV__MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|15|3|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24468994140625 3 481.245609 1440.715 NaN NaN NaN NaN NaN NaN NaN 26.093 1 24.311 23.811 24.811 -1.7821 0 0 0 0.22632 1 4594 4594 1.4551 1.2831 1 + 39947 23843 26716 26732 39252 39252 0.012269473748574455 RYYPSFRY 8 Unmodified _RYYPSFRY_ 0 0 0 REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3361206054688 2 576.285266 1150.55598 NaN NaN NaN NaN NaN NaN NaN 76.122 1 72.707 72.207 73.207 -3.4151 0 0 0 0.19954 1 14857 14857 24.674 4.2203 1 + 39948 16180 26717 26733 39253 39253 -0.013277214626214118 RYYTIRREEKR 11 Unmodified _RYYTIRREEKR_ 0 0 0 REV__nc|ENSG00000107581|Q14152-2|EIF3A REV__nc|ENSG00000107581|Q14152-2|EIF3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6941528320312 3 523.958462 1568.85356 0.35693 0.00018702 1.1458 0.00060037 1.5028 0.00078739 524.2933460314855 144.96 0.20584 140.02 139.9 140.1 -4.9445 6 5 2 0 0 0 0.88957 1 28020 28020 3.0723 0 1 1935900 + 39949 15085 26718 26734 39254 39254 0.09188490343171907 SAAATTKRT 9 Unmodified _SAAATTKRT_ 0 0 0 ENST00000286835.11_1_21:33104259-33104331:-|nuORF ENST00000286835.11_1_21:33104259-33104331:-|nuORF ENST00000286835.11_1_21:33104259-33104331:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75433349609375 2 453.753798 905.493044 0.27955 0.00012685 -1.3338 -0.00060521 -1.0542 -0.00047836 453.75328950455247 29.276 0.49458 27.383 27.123 27.617 -1.8928 18 13 2 0 0 0 0.77797 1 4944 4944 2.7352 0.15772 1 557410 39950 8460 26719 26735 39255 39255 0.03651712749331182 SAAEPSFKD 9 Unmodified _SAAEPSFKD_ 0 0 0 REV__nc|ENSG00000004866|Q9NRC1-6|ST7 REV__nc|ENSG00000004866|Q9NRC1-6|ST7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 953.405517578125 1 951.441802 950.434526 0.2928 0.00027858 -0.60204 -0.00057281 -0.30924 -0.00029423 951.441282557266 54.618 1.0163 51.483 50.975 51.991 -3.1352 66 28 3 0 0 0 0.44932 1 10099 10099 22.736 0 1 39705000 + 39951 13844 26720 26736 39256 39256 -0.04267388615812706 SAAGIKAEKEF 11 Unmodified _SAAGIKAEKEF_ 0 0 0 tr|U7T5W9|U7T5W9_FUSNUDUF2815familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00114PE=4SV=1 tr|U7T5W9|U7T5W9_FUSNUDUF2815familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00114PE=4SV=1 tr|U7T5W9|U7T5W9_FUSNUDUF2815familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00114PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3348999023438 2 575.808771 1149.60299 0.2684 0.00015454 -0.25674 -0.00014783 0.011654 6.7103E-06 575.8088114231294 74.599 0.34309 70.923 70.763 71.106 -3.6764 13 9 2 0 0 0 0.88709 1 14133 14133 2.7352 0 1 890410 39952 26478 26721 26737 39257 39257 0.03417093297844076 SAATAELRP 9 Unmodified _SAATAELRP_ 0 0 0 REV__ENST00000274853.7_1_6:30653619-30653868:-|nuORF REV__ENST00000274853.7_1_6:30653619-30653868:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2386169433594 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 66.852 1 63.355 62.855 63.855 -3.4965 0 0 0 0.16428 1 12536 12536 28.487 6.7402 1 + 39953 20287 26722 26738 39258 39258 0.02148310375048368 SACDGDHWGP 10 Unmodified _SACDGDHWGP_ 0 0 0 nc|ENSG00000145794|Q96KG7-2|MEGF10;MEGF10|p.N964Mfs*2|1|0.49|ENSG00000145794|chr5:127449129-127449129|A/-|frameshift_variant;ENSG00000145794|ENST00000503335|MEGF10 nc|ENSG00000145794|Q96KG7-2|MEGF10 nc|ENSG00000145794|Q96KG7-2|MEGF10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2694702148438 2 522.695623 1043.37669 0.080275 4.1959E-05 1.2911 0.00067483 1.3713 0.00071679 522.6960291098105 94.297 0.69056 90.453 90.263 90.953 -3.844 36 19 3 0 0 0 0.91149 1 18163 18163 1.6526 1.6526 1 3712100 39954 4621 26723 26739 39259 39259 -0.14325973812879056 SACICPCFL 9 Unmodified _SACICPCFL_ 0 0 0 ENST00000478153.1_1_2:217363604-217363871:+|nuORF ENST00000478153.1_1_2:217363604-217363871:+|nuORF ENST00000478153.1_1_2:217363604-217363871:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72918701171875 2 478.705559 955.396566 NaN NaN NaN NaN NaN NaN NaN 131.71 1 131.71 131.21 132.21 0 0 0 0 0.19691 1 26033 26033 2.6312 1.9498 1 39955 10311 26724 26740 39260 39260 -0.08291637398133389 SADAMLKAL 9 Unmodified _SADAMLKAL_ 0 0 0 nc|ENSG00000130598|P48788-2|TNNI2;ENSG00000130598|ENST00000381911|TNNI2 nc|ENSG00000130598|P48788-2|TNNI2 nc|ENSG00000130598|P48788-2|TNNI2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2486267089844 2 460.249503 918.484453 NaN NaN NaN NaN NaN NaN NaN 36.675 1 34.207 33.707 34.707 -2.4688 0 0 0 0.17061 1 6776 6776 27.629 0.74515 1 39956 3620 26725 26741 39261 39261 0.021950227884985907 SADDGIRNL 9 Unmodified _SADDGIRNL_ 0 0 0 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2424621582031 2 480.740888 959.467223 -0.037107 -1.7839E-05 1.2881 0.00061925 1.251 0.00060141 480.74146999471003 53.604 1.0013 53.604 53.317 54.318 0 47 27 2 0 0 0 0.13904 2 10260 10260;10315 45.74 7.8781 1 1461900 39957 5937 26726 26742 39262;39263 39262 -0.01413181492955573 SADDGIRNL 9 Unmodified _SADDGIRNL_ 0 0 0 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2410583496094 2 480.740888 959.467223 -0.11915 -5.7282E-05 1.8554 0.00089198 1.7363 0.0008347 480.7418770977577 56.475 0.62115 53.581 53.235 53.856 -2.8944 29 17 2 0 0 0 0.30618 1 10821 10821 31.268 2.1868 1 1743600 39958 5937 26726 26742 39264 39264 -0.01413181492955573 SADDGIRNL 9 Unmodified _SADDGIRNL_ 0 0 0 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2433776855469 2 480.740888 959.467223 0.092268 4.4357E-05 2.0139 0.00096816 2.1062 0.0010125 480.7417032247375 56.779 0.69746 53.589 53.336 54.034 -3.1895 32 19 2 0 0 0 0.13932 1 10564 10564 45.7 12.914 1 1546600 39959 5937 26726 26742 39265 39265 -0.01413181492955573 SADFKTEL 8 Unmodified _SADFKTEL_ 0 0 0 ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF;ETF1|p.G304Wfs*3|1|0.05|ENSG00000120705|chr5:138511153-138511154|-/A|frameshift_variant;nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1 ENST00000503183.1_1_5:137848440-137853282:-|nuORF ENST00000503183.1_1_5:137848440-137853282:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 455.35064697265625 2 455.729458 909.444362 -0.19245 -8.7704E-05 0.48925 0.00022297 0.2968 0.00013526 455.7295810367323 73.963 0.65356 70.598 70.263 70.917 -3.3643 49 18 4 0 0 0 0.96284 1 14434 14434 13.508 4.1604 1 5883400 39960 3149 26727 26743 39266 39266 -0.013982006104356515 SADFKTEL 8 Unmodified _SADFKTEL_ 0 0 0 ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF;ETF1|p.G304Wfs*3|1|0.05|ENSG00000120705|chr5:138511153-138511154|-/A|frameshift_variant;nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1 ENST00000503183.1_1_5:137848440-137853282:-|nuORF ENST00000503183.1_1_5:137848440-137853282:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 455.729458 909.444362 0.093032 4.2397E-05 0.33859 0.00015431 0.43162 0.0001967 455.7294802950854 70.798 0.69418 70.798 70.413 71.107 0 0.16105 7.9081E-05 NaN 8.5933 39 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4585700 39961 3149 26727 26743 -0.013982006104356515 SADFKTEL 8 Unmodified _SADFKTEL_ 0 0 0 ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF;ETF1|p.G304Wfs*3|1|0.05|ENSG00000120705|chr5:138511153-138511154|-/A|frameshift_variant;nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1 ENST00000503183.1_1_5:137848440-137853282:-|nuORF ENST00000503183.1_1_5:137848440-137853282:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 455.729458 909.444362 0.13724 6.2543E-05 0.20415 9.3039E-05 0.34139 0.00015558 455.72946555022475 74.245 0.55459 70.568 70.311 70.866 -3.6764 -0.068761 -4.3452E-05 NaN 8.5933 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 5295900 39962 3149 26727 26743 -0.013982006104356515 SADFKTEL 8 Unmodified _SADFKTEL_ 0 0 0 ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF;ETF1|p.G304Wfs*3|1|0.05|ENSG00000120705|chr5:138511153-138511154|-/A|frameshift_variant;nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1 ENST00000503183.1_1_5:137848440-137853282:-|nuORF ENST00000503183.1_1_5:137848440-137853282:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 455.729458 909.444362 0.34303 0.00015633 -0.028613 -1.304E-05 0.31442 0.00014329 455.72936894973407 74.177 0.55748 70.583 70.362 70.92 -3.594 -0.053613 -0.00025561 NaN 8.5933 38 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4716000 39963 3149 26727 26743 -0.013982006104356515 SADGHLYITY 10 Unmodified _SADGHLYITY_ 0 0 0 REV__ENSG00000120332|ENST00000239462|TNN REV__ENSG00000120332|ENST00000239462|TNN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.20965576171875 3 380.517106 1138.52949 0.012084 4.5983E-06 0.15322 5.8301E-05 0.1653 6.29E-05 380.5170974120101 48.277 0.66245 45.335 44.937 45.599 -2.9421 45 18 3 0 0 0 0.74847 1 8765 8765 6.1918 1.663 1 2623400 + 39964 15619 26728 26744 39267 39267 -0.03423455144638865 SADGHLYITY 10 Unmodified _SADGHLYITY_ 0 0 0 REV__ENSG00000120332|ENST00000239462|TNN REV__ENSG00000120332|ENST00000239462|TNN MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 380.517106 1138.52949 0.16886 6.4256E-05 0.20719 7.884E-05 0.37606 0.0001431 380.51709938156284 45.211 0.49308 45.211 44.92 45.413 0 -0.090023 -0.0002764 NaN 6.1918 34 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3571000 + 39965 15619 26728 26744 -0.03423455144638865 SADGHLYITY 10 Unmodified _SADGHLYITY_ 0 0 0 REV__ENSG00000120332|ENST00000239462|TNN REV__ENSG00000120332|ENST00000239462|TNN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.517106 1138.52949 -0.304 -0.00011568 0.41274 0.00015706 0.10874 4.1377E-05 380.5172246958151 48.183 0.91764 45.314 45.018 45.936 -2.869 0.012976 -4.1752E-05 NaN 6.1918 44 25 3 NaN NaN NaN NaN 0 NaN NaN 0 3761300 + 39966 15619 26728 26744 -0.03423455144638865 SADGHLYITY 10 Unmodified _SADGHLYITY_ 0 0 0 REV__ENSG00000120332|ENST00000239462|TNN REV__ENSG00000120332|ENST00000239462|TNN MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.517106 1138.52949 0.012084 4.5983E-06 0.15322 5.8301E-05 0.1653 6.29E-05 380.5170974120101 48.277 0.66245 45.335 44.937 45.599 -2.9421 0.033234 -0.00033801 NaN 6.1918 45 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2623400 + 39967 15619 26728 26744 -0.03423455144638865 SADGHLYITY 10 Unmodified _SADGHLYITY_ 0 0 0 REV__ENSG00000120332|ENST00000239462|TNN REV__ENSG00000120332|ENST00000239462|TNN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 380.517106 1138.52949 -0.7611 -0.00028961 0.92117 0.00035052 0.16006 6.0906E-05 380.517404697279 48.295 0.66208 45.345 44.95 45.612 -2.9499 0.043813 0.00053864 NaN 6.1918 39 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2264700 + 39968 15619 26728 26744 -0.03423455144638865 SADGHSIL 8 Unmodified _SADGHSIL_ 0 0 0 ENSG00000241945|ENST00000291576|PWP2;ENST00000471490.1_1_21:45542017-45544896:+|nuORF ENSG00000241945|ENST00000291576|PWP2 ENSG00000241945|ENST00000291576|PWP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 399.83056640625 2 400.200867 798.387182 0.279 0.00011166 -0.18877 -7.5547E-05 0.090229 3.611E-05 400.20068168867755 45.451 0.63298 45.451 45.092 45.725 0 26 17 2 0 0 0 0.34713 1 8567 8567 15.478 5.9345 1 995620 39969 7861 26729 26745 39268 39268 -0.02007623096142197 SADGHTML 8 Unmodified _SADGHTML_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 416.6883239746094 2 416.186903 830.359253 -0.5008 -0.00020843 0.58642 0.00024406 0.085616 3.5632E-05 416.18709909697833 38.335 0.41956 35.864 35.708 36.127 -2.4715 18 11 2 0 0 0 8448 1 7122 7122 6.3914 5.9831 1 2271500 39970 6864 26730 26746 39269 39269 -0.06271269347882935 SADGHTML 8 Unmodified _SADGHTML_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 416.186903 830.359253 0.034531 1.4371E-05 -0.085321 -3.5509E-05 -0.05079 -2.1138E-05 416.18684254387523 38.286 0.5292 35.844 35.63 36.16 -2.4419 -0.025281 -0.00027024 NaN 6.3914 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2174400 39971 6864 26730 26746 -0.06271269347882935 SADGHTML 8 Unmodified _SADGHTML_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 416.186903 830.359253 -0.17134 -7.1308E-05 0.44575 0.00018552 0.27441 0.00011421 416.1870378741079 38.306 0.48641 35.901 35.639 36.125 -2.4049 0.031179 0.00017181 NaN 6.3914 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1386600 39972 6864 26730 26746 -0.06271269347882935 SADGIVIR 8 Unmodified _SADGIVIR_ 0 0 0 REV__ENSG00000105675|ENST00000262623|ATP4A REV__ENSG00000105675|ENST00000262623|ATP4A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.25286865234375 2 415.74016 829.465767 -0.17145 -7.1278E-05 0.034478 1.4334E-05 -0.13697 -5.6944E-05 415.74023893473674 82.538 0.76988 78.93 78.497 79.266 -3.6079 44 21 3 0 0 0 0.44415 1 16118 16118 46.921 6.4723 1 3774500 + 39973 15009 26731 26747 39270 39270 0.04421229208935529 SADGIVIR 8 Unmodified _SADGIVIR_ 0 0 0 REV__ENSG00000105675|ENST00000262623|ATP4A REV__ENSG00000105675|ENST00000262623|ATP4A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 415.74016 829.465767 0.50028 0.00020799 -0.51293 -0.00021325 -0.012654 -5.2606E-06 415.73999064268935 79.316 0.72617 79.316 78.996 79.722 0 0.23318 -0.00027687 NaN 46.921 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4344300 + 39974 15009 26731 26747 0.04421229208935529 SADGIVIR 8 Unmodified _SADGIVIR_ 0 0 0 REV__ENSG00000105675|ENST00000262623|ATP4A REV__ENSG00000105675|ENST00000262623|ATP4A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 415.74016 829.465767 0.067875 2.8218E-05 -0.096152 -3.9974E-05 -0.028277 -1.1756E-05 415.74018077429594 82.906 0.7299 79.032 78.632 79.362 -3.8736 -0.050688 6.9676E-05 NaN 46.921 44 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3185700 + 39975 15009 26731 26747 0.04421229208935529 SADGTITRV 9 Unmodified _SADGTITRV_ 0 0 0 SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant;ENSG00000102359|ENST00000373004|SRPX2 SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.248046875 2 460.245806 918.47706 0.21625 9.953E-05 1.3619 0.00062682 1.5782 0.00072635 460.24680466584397 34.581 0.68246 34.581 34.278 34.961 0 29 19 2 0 0 0 0.33094 2 6312 6312;6368 29.841 5.82 1 747340 39976 2127 26732 26748 39271;39272 39271 0.014560065124328503 SADGTITRV 9 Unmodified _SADGTITRV_ 0 0 0 SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant;ENSG00000102359|ENST00000373004|SRPX2 SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24658203125 2 460.245806 918.47706 0.25986 0.0001196 4.1318 0.0019016 4.3917 0.0020212 460.2473155514801 36.68 0.46145 34.343 34.096 34.557 -2.3375 17 12 2 0 0 0 0.5685 1 6507 6507 15.248 1.3424 1 333880 39977 2127 26732 26748 39273 39273 0.014560065124328503 SADGTVRL 8 Unmodified _SADGTVRL_ 0 0 0 ENSG00000196792|ENST00000357479|STRN3;nc|ENSG00000196792|Q13033-2|STRN3;STRN3|p.E617Kfs*24|1|0.23|ENSG00000196792|chr14:30906916-30906916|C/-|frameshift_variant ENSG00000196792|ENST00000357479|STRN3 ENSG00000196792|ENST00000357479|STRN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.2237548828125 2 409.721967 817.429381 -0.29356 -0.00012028 0.18318 7.5052E-05 -0.11038 -4.5227E-05 409.7220050313757 42.857 1.0385 40.138 39.803 40.842 -2.7191 80 28 4 0 0 0 8448 1 8094 8094 23.79 0 1 32242000 39978 7310 26733 26749 39274 39274 0.01336352312227973 SADGTVRL 8 Unmodified _SADGTVRL_ 0 0 0 ENSG00000196792|ENST00000357479|STRN3;nc|ENSG00000196792|Q13033-2|STRN3;STRN3|p.E617Kfs*24|1|0.23|ENSG00000196792|chr14:30906916-30906916|C/-|frameshift_variant ENSG00000196792|ENST00000357479|STRN3 ENSG00000196792|ENST00000357479|STRN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.2152099609375 2 409.721967 817.429381 -0.18957 -7.7671E-05 -0.13214 -5.4141E-05 -0.32171 -0.00013181 409.7219847553629 45.68 0.65966 42.839 42.512 43.171 -2.8409 38 18 3 0 0 0 8448 1 8638 8638 51.63 0 1 3303800 39979 7310 26733 26749 39275 39275 0.01336352312227973 SADGTVRL 8 Unmodified _SADGTVRL_ 0 0 0 ENSG00000196792|ENST00000357479|STRN3;nc|ENSG00000196792|Q13033-2|STRN3;STRN3|p.E617Kfs*24|1|0.23|ENSG00000196792|chr14:30906916-30906916|C/-|frameshift_variant ENSG00000196792|ENST00000357479|STRN3 ENSG00000196792|ENST00000357479|STRN3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 409.721967 817.429381 -0.037612 -1.541E-05 -0.27281 -0.00011178 -0.31042 -0.00012719 409.7218876579536 45.782 0.65252 42.917 42.553 43.206 -2.8653 0.038896 -5.7846E-05 NaN 51.63 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4028700 39980 7310 26733 26749 0.01336352312227973 SADGTVRL 8 Unmodified _SADGTVRL_ 0 0 0 ENSG00000196792|ENST00000357479|STRN3;nc|ENSG00000196792|Q13033-2|STRN3;STRN3|p.E617Kfs*24|1|0.23|ENSG00000196792|chr14:30906916-30906916|C/-|frameshift_variant ENSG00000196792|ENST00000357479|STRN3 ENSG00000196792|ENST00000357479|STRN3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 409.721967 817.429381 -0.072663 -2.9772E-05 -0.078796 -3.2285E-05 -0.15146 -6.2056E-05 409.72189870136924 42.866 1.0626 40.215 39.811 40.873 -2.651 0.025179 -0.00020581 NaN 23.79 76 29 4 NaN NaN NaN NaN 0 NaN NaN 0 27859000 39981 7310 26733 26749 0.01336352312227973 SADGTVRL 8 Unmodified _SADGTVRL_ 0 0 0 ENSG00000196792|ENST00000357479|STRN3;nc|ENSG00000196792|Q13033-2|STRN3;STRN3|p.E617Kfs*24|1|0.23|ENSG00000196792|chr14:30906916-30906916|C/-|frameshift_variant ENSG00000196792|ENST00000357479|STRN3 ENSG00000196792|ENST00000357479|STRN3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 409.721967 817.429381 -0.44261 -0.00018135 0.33524 0.00013736 -0.10737 -4.3991E-05 409.72208649556535 42.822 1.0453 40.216 39.826 40.872 -2.606 0.026669 0.00013347 NaN 23.79 80 29 5 NaN NaN NaN NaN 0 NaN NaN 0 25418000 39982 7310 26733 26749 0.01336352312227973 SADHLAHEV 9 Unmodified _SADHLAHEV_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2523498535156 2 489.735606 977.456658 0.23532 0.00011524 -0.47585 -0.00023304 -0.24054 -0.0001178 489.7353394074997 24.884 0.33154 24.884 24.715 25.046 0 16 9 2 0 0 0 0.19359 1 4295 4295 47.749 27.295 1 1148700 39983 1097 26734 26750 39276 39276 -0.03297164147386411 SADHLAHEV 9 Unmodified _SADHLAHEV_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26513671875 2 489.735606 977.456658 0.25318 0.00012399 -0.57657 -0.00028237 -0.3234 -0.00015838 489.7352557693712 26.463 0.41822 24.828 24.548 24.966 -1.6347 17 11 2 0 0 0 0.13932 1 4385 4385 45.7 25.246 1 1070800 39984 1097 26734 26750 39277 39277 -0.03297164147386411 SADHLAHEV 9 Unmodified _SADHLAHEV_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2652587890625 2 489.735606 977.456658 -0.19042 -9.3256E-05 0.27944 0.00013685 0.089014 4.3593E-05 489.7356780404573 26.638 0.44422 24.716 24.469 24.913 -1.9222 19 12 2 0 0 0 0.067773 1 4434 4434 65.235 31.133 1 1044400 39985 1097 26734 26750 39278 39278 -0.03297164147386411 SADKFQVL 8 Unmodified _SADKFQVL_ 0 0 0 ENST00000566843.1_1_15:75631960-75632245:+|nuORF;ENST00000565834.1_1_15:75631960-75632343:+|nuORF;ENSG00000140365|ENST00000267935|COMMD4 ENST00000566843.1_1_15:75631960-75632245:+|nuORF ENST00000566843.1_1_15:75631960-75632245:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7694091796875 2 454.247818 906.481082 NaN NaN NaN NaN NaN NaN NaN 93.934 1 89.943 89.443 90.443 -3.9907 0 0 0 0.14659 1 18401 18401 37.974 5.6685 1 39986 4293 26735 26751 39279 39279 0.024100960061332444 SADKPLSNM 9 Unmodified _SADKPLSNM_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;PARP1|p.S507Afs*17|2|0.28|ENSG00000143799|chr1:226379946-226379946|T/-|frameshift_variant;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78082275390625 2 481.734217 961.453881 -0.052932 -2.5499E-05 1.4173 0.00068276 1.3644 0.00065726 481.7349495144859 43.247 0.88891 40.528 40.266 41.155 -2.7191 40 24 2 0 0 0 7.4491E-05 1 8117 8117 128.58 46.049 1 6223400 39987 4520 26736 26752 39280 39280 -0.028387555965537103 SADKPLSNM 9 Unmodified _SADKPLSNM_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;PARP1|p.S507Afs*17|2|0.28|ENSG00000143799|chr1:226379946-226379946|T/-|frameshift_variant;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7703552246094 2 481.734217 961.453881 -0.010399 -5.0095E-06 0.92324 0.00044476 0.91284 0.00043975 481.73490975077095 43.201 0.9996 40.435 40.114 41.113 -2.7661 55 27 3 0 0 0 7.4491E-05 1 7825 7825 128.58 55.611 1 8009600 39988 4520 26736 26752 39281 39281 -0.028387555965537103 SADKPLSNM 9 Unmodified _SADKPLSNM_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;PARP1|p.S507Afs*17|2|0.28|ENSG00000143799|chr1:226379946-226379946|T/-|frameshift_variant;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7808837890625 2 481.734217 961.453881 -0.10561 -5.0877E-05 1.4746 0.00071038 1.369 0.0006595 481.73505289216524 43.182 0.87204 40.576 40.246 41.118 -2.606 41 24 2 0 0 0 0.046871 1 7825 7825 91.085 31.011 1 4247500 39989 4520 26736 26752 39282 39282 -0.028387555965537103 SADNPSHAY 9 Unmodified _SADNPSHAY_ 0 0 0 ENSG00000162426|ENST00000471889|SLC45A1 ENSG00000162426|ENST00000471889|SLC45A1 ENSG00000162426|ENST00000471889|SLC45A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2457275390625 2 481.204138 960.393724 -0.065511 -3.1524E-05 0.2785 0.00013401 0.21299 0.00010249 481.2042814418455 18.041 0.38648 18.041 17.915 18.302 0 14 10 2 0 0 0 0.52242 1 2893 2893 29.082 16.841 1 798690 39990 5332 26737 26753 39283 39283 -0.08805729935431827 SADNPSHAY 9 Unmodified _SADNPSHAY_ 0 0 0 ENSG00000162426|ENST00000471889|SLC45A1 ENSG00000162426|ENST00000471889|SLC45A1 ENSG00000162426|ENST00000471889|SLC45A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24566650390625 2 481.204138 960.393724 0.1447 6.9631E-05 0.049282 2.3715E-05 0.19398 9.3345E-05 481.20419788526215 19.357 0.36081 17.96 17.776 18.137 -1.3966 18 9 3 0 0 0 0.11402 1 3194 3194 43.772 22.235 1 1123000 39991 5332 26737 26753 39284 39284 -0.08805729935431827 SADNPSHAY 9 Unmodified _SADNPSHAY_ 0 0 0 ENSG00000162426|ENST00000471889|SLC45A1 ENSG00000162426|ENST00000471889|SLC45A1 ENSG00000162426|ENST00000471889|SLC45A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24578857421875 2 481.204138 960.393724 -0.29503 -0.00014197 0.58041 0.0002793 0.28538 0.00013733 481.2043703680742 19.31 0.31931 17.985 17.755 18.074 -1.3251 11 8 2 0 0 0 0.66788 1 2928 2928 17.113 8.9574 1 543080 39992 5332 26737 26753 39285 39285 -0.08805729935431827 SADPKLSLM 9 Unmodified _SADPKLSLM_ 0 0 0 nc|ENSG00000007264|P42679-3|MATK;ENSG00000007264|ENST00000310132|MATK;nc|ENSG00000007264|P42679-2|MATK nc|ENSG00000007264|P42679-3|MATK nc|ENSG00000007264|P42679-3|MATK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2535705566406 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 43.375 1 40.656 40.156 41.156 -2.7191 0 0 0 0.1599 1 8130 8130 29.082 3.6823 1 39993 1019 26738 26754 39286 39286 0.013190054429287557 SADPNVVDL 9 Unmodified _SADPNVVDL_ 0 0 0 ENST00000567143.1_1_16:58436992-58437325:+|nuORF;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3 ENST00000567143.1_1_16:58436992-58437325:+|nuORF ENST00000567143.1_1_16:58436992-58437325:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2489013671875 2 465.232364 928.450176 -0.10005 -4.6545E-05 -0.19417 -9.0335E-05 -0.29422 -0.00013688 465.2322219353951 94.686 0.96874 94.686 94.107 95.076 0 45 27 2 0 0 0 0.13999 2 18516 18516;18565 22.621 13.898 1 2185500 39994 6753 26739 26755 39287;39288 39287 -0.016911020987663505 SADPNVVDL 9 Unmodified _SADPNVVDL_ 0 0 0 ENST00000567143.1_1_16:58436992-58437325:+|nuORF;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3 ENST00000567143.1_1_16:58436992-58437325:+|nuORF ENST00000567143.1_1_16:58436992-58437325:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.4900512695312 1 929.457453 928.450176 0.18177 0.00016895 0.3693 0.00034324 0.55107 0.0005122 929.4575954838208 98.497 0.90518 94.365 93.915 94.82 -4.1326 43 25 2 0 0 0 0.2932 2 19297 19297;19299 20.415 8.1739 1 2937700 39995 6753 26739 26755 39289;39290 39289 -0.016911020987663505 SADPNVVDL 9 Unmodified _SADPNVVDL_ 0 0 0 ENST00000567143.1_1_16:58436992-58437325:+|nuORF;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3 ENST00000567143.1_1_16:58436992-58437325:+|nuORF ENST00000567143.1_1_16:58436992-58437325:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 930.5064697265625 1 929.457453 928.450176 0.44448 0.00041312 0.54389 0.00050552 0.98837 0.00091865 929.4579415991686 98.753 0.73962 94.484 94.121 94.861 -4.2692 35 20 2 0 0 0 0.2932 1 18868 18868 0.87518 0.49559 1 3600800 39996 6753 26739 26755 39291 39291 -0.016911020987663505 SADPNVVDL 9 Unmodified _SADPNVVDL_ 0 0 0 ENST00000567143.1_1_16:58436992-58437325:+|nuORF;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3 ENST00000567143.1_1_16:58436992-58437325:+|nuORF ENST00000567143.1_1_16:58436992-58437325:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2592468261719 2 465.232364 928.450176 0.17083 7.9475E-05 -0.4086 -0.00019009 -0.23777 -0.00011062 465.2321282387341 98.82 0.91347 94.55 94.121 95.034 -4.2692 42 25 2 0 0 0 0.16619 1 18965 18965 41.84 9.5341 1 1638600 39997 6753 26739 26755 39292 39292 -0.016911020987663505 SADPNVVDL 9 Unmodified _SADPNVVDL_ 0 0 0 ENST00000567143.1_1_16:58436992-58437325:+|nuORF;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3 ENST00000567143.1_1_16:58436992-58437325:+|nuORF ENST00000567143.1_1_16:58436992-58437325:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2401428222656 2 465.232364 928.450176 0.12279 5.7127E-05 -0.58931 -0.00027416 -0.46651 -0.00021704 465.23206503620213 98.392 0.84212 94.436 94.161 95.003 -3.9564 40 24 2 0 0 0 0.23744 1 18897 18897 52.268 10.174 1 2111300 39998 6753 26739 26755 39293 39293 -0.016911020987663505 SADPNVVDL 9 Unmodified _SADPNVVDL_ 0 0 0 ENST00000567143.1_1_16:58436992-58437325:+|nuORF;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3 ENST00000567143.1_1_16:58436992-58437325:+|nuORF ENST00000567143.1_1_16:58436992-58437325:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 929.457453 928.450176 0.29924 0.00027813 0.31603 0.00029374 0.61528 0.00057187 929.4578253903353 94.587 0.76536 94.587 94.209 94.974 0 0.10464 -8.1894E-05 NaN 0.87518 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 3648700 39999 6753 26739 26755 -0.016911020987663505 SADPNVVDL 9 Unmodified _SADPNVVDL_ 0 0 0 ENST00000567143.1_1_16:58436992-58437325:+|nuORF;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3 ENST00000567143.1_1_16:58436992-58437325:+|nuORF ENST00000567143.1_1_16:58436992-58437325:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 929.457453 928.450176 0.25965 0.00024134 0.50755 0.00047174 0.7672 0.00071308 929.4579648546714 98.45 0.84323 94.493 94.127 94.97 -3.9564 0.011206 9.611E-05 NaN 0.87518 40 24 2 NaN NaN NaN NaN 0 NaN NaN 0 3242100 40000 6753 26739 26755 -0.016911020987663505 SADSFQSFY 9 Unmodified _SADSFQSFY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 527.707763671875 2 526.221997 1050.42944 0.066307 3.4892E-05 0.044433 2.3382E-05 0.11074 5.8274E-05 526.2219709591722 123.88 0.87532 119.31 118.92 119.8 -4.5757 77 24 4 0 0 0 0.069179 1 24419 24419 47.987 46.06 1 28057000 40001 4043 26740 26756 39294 39294 -0.09375692478397468 SADSFQSFY 9 Unmodified _SADSFQSFY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 526.221997 1050.42944 0.15034 7.9113E-05 0.0079501 4.1835E-06 0.15829 8.3297E-05 526.2219599096621 124.03 1.0671 119.3 118.74 119.81 -4.731 0.049008 8.2032E-05 NaN 47.987 85 29 4 NaN NaN NaN NaN 0 NaN NaN 0 22433000 40002 4043 26740 26756 -0.09375692478397468 SADSFQSFY 9 Unmodified _SADSFQSFY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 526.221997 1050.42944 0.31824 0.00016746 -0.29917 -0.00015743 0.019065 1.0032E-05 526.2217643242659 123.74 0.96988 119.15 118.69 119.66 -4.5926 -0.10364 -0.0002412 NaN 47.987 91 27 4 NaN NaN NaN NaN 0 NaN NaN 0 27323000 40003 4043 26740 26756 -0.09375692478397468 SADVGYLFS 9 Unmodified _SADVGYLFS_ 0 0 0 ENSG00000172935|ENST00000309099|MRGPRF ENSG00000172935|ENST00000309099|MRGPRF ENSG00000172935|ENST00000309099|MRGPRF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2319641113281 2 479.729458 957.444362 -0.050936 -2.4436E-05 -1.4736 -0.00070695 -1.5246 -0.00073138 479.728196771598 58.671 1.3208 55.761 54.963 56.284 -2.9105 133 37 5 0 0 0 0.48644 1 11148 11148 20.454 0 1 18890000 40004 6254 26741 26757 39295 39295 -0.036062006104316424 SADVGYLFS 9 Unmodified _SADVGYLFS_ 0 0 0 ENSG00000172935|ENST00000309099|MRGPRF ENSG00000172935|ENST00000309099|MRGPRF ENSG00000172935|ENST00000309099|MRGPRF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.729458 957.444362 0.092047 4.4158E-05 -1.3308 -0.00063842 -1.2387 -0.00059426 479.72806351996326 58.929 1.2719 55.677 54.927 56.198 -3.2517 -0.0082802 9.1285E-07 NaN 20.454 108 35 4 NaN NaN NaN NaN 0 NaN NaN 0 15260000 40005 6254 26741 26757 -0.036062006104316424 SADYEEQKNSF 11 Unmodified _SADYEEQKNSF_ 0 0 0 ENSG00000187944|ENST00000342506|C2orf66;nc|nan|Q6UXQ4|C2orf66 ENSG00000187944|ENST00000342506|C2orf66 ENSG00000187944|ENST00000342506|C2orf66 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 440.19403076171875 3 439.857968 1316.55207 NaN NaN NaN NaN NaN NaN NaN 30.773 1 28.657 28.157 29.157 -2.1167 0 0 0 0.22632 1 5570 5570 0.172 0 1 40006 7136 26742 26758 39296 39296 -0.09353900537666959 SAEAVLQNAY 10 Unmodified _SAEAVLQNAY_ 0 0 0 ENSG00000111254|ENST00000228850|AKAP3 ENSG00000111254|ENST00000228850|AKAP3 ENSG00000111254|ENST00000228850|AKAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2642822265625 2 533.264196 1064.51384 0.24626 0.00013132 -0.47714 -0.00025444 -0.23088 -0.00012312 533.2640824827868 83.597 0.49491 83.597 83.361 83.856 0 18 13 2 0 0 0 0.37059 1 16282 16282 32.786 3.7041 1 2571600 40007 2612 26743 26759 39297 39297 -0.015837416616705013 SAEAVLQNAY 10 Unmodified _SAEAVLQNAY_ 0 0 0 ENSG00000111254|ENST00000228850|AKAP3 ENSG00000111254|ENST00000228850|AKAP3 ENSG00000111254|ENST00000228850|AKAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.263916015625 2 533.264196 1064.51384 0.0026466 1.4113E-06 -0.72596 -0.00038713 -0.72331 -0.00038572 533.2639568570116 87.468 0.50412 83.741 83.504 84.008 -3.727 19 13 2 0 0 0 0.26497 2 17084 17084;17115 39.95 14.55 1 2053200 40008 2612 26743 26759 39298;39299 39298 -0.015837416616705013 SAEAVLQNAY 10 Unmodified _SAEAVLQNAY_ 0 0 0 ENSG00000111254|ENST00000228850|AKAP3 ENSG00000111254|ENST00000228850|AKAP3 ENSG00000111254|ENST00000228850|AKAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2772827148438 2 533.264196 1064.51384 0.71045 0.00037886 -1.3319 -0.00071024 -0.62143 -0.00033138 533.2635982273583 87.722 0.52773 83.727 83.447 83.975 -3.9953 17 14 2 0 0 0 0.26497 2 16660 16654;16660 39.95 7.164 1 1672700 40009 2612 26743 26759 39300;39301 39301 -0.015837416616705013 SAEAVLQNAY 10 Unmodified _SAEAVLQNAY_ 0 0 0 ENSG00000111254|ENST00000228850|AKAP3 ENSG00000111254|ENST00000228850|AKAP3 ENSG00000111254|ENST00000228850|AKAP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.263916015625 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 87.308 1 83.579 83.079 84.079 -3.7289 0 0 0 0.17567 1 16702 16702 32.786 1.5173 1 40010 2612 26743 26759 39302 39302 -0.015837416616705013 SAEAVLQNAY 10 Unmodified _SAEAVLQNAY_ 0 0 0 ENSG00000111254|ENST00000228850|AKAP3 ENSG00000111254|ENST00000228850|AKAP3 ENSG00000111254|ENST00000228850|AKAP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27783203125 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 87.42 1 83.691 83.191 84.191 -3.7289 0 0 0 0.17567 1 16726 16726 32.786 0 1 40011 2612 26743 26759 39303 39303 -0.015837416616705013 SAEDSAHIQ 9 Unmodified _SAEDSAHIQ_ 0 0 0 ENST00000553576.5_1_14:77901517-77909492:-|nuORF;nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39 ENST00000553576.5_1_14:77901517-77909492:-|nuORF ENST00000553576.5_1_14:77901517-77909492:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7327880859375 2 479.217246 956.419939 0.73722 0.00035329 0.84247 0.00040372 1.5797 0.00075701 479.21759386528913 105.13 0.67188 101.04 100.72 101.4 -4.0913 29 18 2 0 0 0 0.58699 1 20188 20188 13.906 0.86358 1 1332300 40012 4867 26744 26760 39304 39304 -0.06001460763945943 SAEEPPPP 8 Unmodified _SAEEPPPP_ 0 0 0 REV__ENST00000368655.4_1_1:153895236-153895440:-|nuORF REV__ENST00000368655.4_1_1:153895236-153895440:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 825.3893432617188 1 823.383225 822.375948 0.19795 0.00016299 -0.052319 -4.3078E-05 0.14563 0.00011991 823.3831158438066 54.056 0.48413 51.172 51.013 51.497 -2.8837 28 13 3 0 0 0 0.64227 1 10308 10308 19.439 0 1 36891000 + 40013 20944 26745 26761 39305 39305 -0.04234445190286351 SAEEPPPP 8 Unmodified _SAEEPPPP_ 0 0 0 REV__ENST00000368655.4_1_1:153895236-153895440:-|nuORF REV__ENST00000368655.4_1_1:153895236-153895440:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 823.383225 822.375948 0.6166 0.0005077 -0.2481 -0.00020428 0.3685 0.00030342 823.382944399187 51.218 0.48556 51.218 51.022 51.507 0 0.077344 -0.00019084 NaN 19.439 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 31692000 + 40014 20944 26745 26761 -0.04234445190286351 SAEEPPPP 8 Unmodified _SAEEPPPP_ 0 0 0 REV__ENST00000368655.4_1_1:153895236-153895440:-|nuORF REV__ENST00000368655.4_1_1:153895236-153895440:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 823.383225 822.375948 0.29234 0.00024071 -0.04006 -3.2984E-05 0.25228 0.00020773 823.3831158733542 54.261 0.63066 51.126 50.905 51.535 -3.1352 -0.014235 -1.9544E-05 NaN 19.439 34 17 3 NaN NaN NaN NaN 0 NaN NaN 0 27781000 + 40015 20944 26745 26761 -0.04234445190286351 SAEEPPPP 8 Unmodified _SAEEPPPP_ 0 0 0 REV__ENST00000368655.4_1_1:153895236-153895440:-|nuORF REV__ENST00000368655.4_1_1:153895236-153895440:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 823.383225 822.375948 0.13538 0.00011147 0.28334 0.0002333 0.41872 0.00034477 823.383263583715 54.183 0.80775 51.045 50.886 51.693 -3.1377 -0.095196 0.00024674 NaN 19.439 38 22 3 NaN NaN NaN NaN 0 NaN NaN 0 19797000 + 40016 20944 26745 26761 -0.04234445190286351 SAEETNEKA 9 Unmodified _SAEETNEKA_ 0 0 0 REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26739501953125 2 489.722361 977.430169 1.305 0.00063911 -0.82698 -0.00040499 0.47806 0.00023412 489.7217598413266 25.742 0.62333 24.093 23.824 24.447 -1.6482 36 17 3 0 0 0 0.45972 1 4538 4538 8.1555 0 1 3933400 + 40017 14201 26746 26762 39306 39306 -0.05944897829385809 SAEHRWTGFL 10 Unmodified _SAEHRWTGFL_ 0 0 0 ENST00000436842.5_1_2:3599790-3605539:-|nuORF ENST00000436842.5_1_2:3599790-3605539:-|nuORF ENST00000436842.5_1_2:3599790-3605539:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2989501953125 2 602.298904 1202.58326 NaN NaN NaN NaN NaN NaN NaN 101.76 1 97.742 97.242 98.242 -4.0212 0 0 0 0.22588 1 19554 19554 8.1555 0.8663 1 40018 9845 26747 26763 39307 39307 -0.009932379222391319 SAEKKAAG 8 Unmodified _SAEKKAAG_ 0 0 0 ENSG00000138061|ENST00000610745|CYP1B1 ENSG00000138061|ENST00000610745|CYP1B1 ENSG00000138061|ENST00000610745|CYP1B1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21051025390625 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 110.74 1 106.25 105.75 106.75 -4.4915 0 0 0 0.22676 1 21257 21257 0.063987 0 1 40019 4143 26748 26764 39308 39308 0.018129672835243582 SAELLNQV 8 Unmodified _SAELLNQV_ 0 0 0 ENST00000551198.5_1_12:113229782-113229988:+|nuORF;ENST00000389385.8_1_12:113229774-113229988:+|nuORF ENST00000551198.5_1_12:113229782-113229988:+|nuORF ENST00000551198.5_1_12:113229782-113229988:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2273864746094 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 62.177 1 62.177 61.677 62.677 0 0 0 0 0.21486 1 11937 11937 9.3474 0 1 40020 9355 26749 26765 39309 39309 0.019015056264720442 SAEPPTNEA 9 Unmodified _SAEPPTNEA_ 0 0 0 ENSG00000173320|ENST00000308497|STOX2 ENSG00000173320|ENST00000308497|STOX2 ENSG00000173320|ENST00000308497|STOX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23028564453125 2 458.206347 914.39814 0.22068 0.00010112 0.060022 2.7502E-05 0.28071 0.00012862 458.20629788755843 19.224 1.4831 19.224 18.687 20.17 0 89 42 3 0 0 0 0.039785 2 3216 3122;3216 75.761 23.492 1 2465200 40021 6287 26750 26766 39310;39311 39311 -0.062482655125222664 SAEPPTNEA 9 Unmodified _SAEPPTNEA_ 0 0 0 ENSG00000173320|ENST00000308497|STOX2 ENSG00000173320|ENST00000308497|STOX2 ENSG00000173320|ENST00000308497|STOX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2418518066406 2 458.206347 914.39814 0.22422 0.00010274 0.11309 5.1818E-05 0.3373 0.00015456 458.2063243868363 20.612 1.748 19.215 18.309 20.057 -1.3966 101 49 3 0 0 0 0.022938 2 3413 3365;3413 89.401 37.132 1 3277500 40022 6287 26750 26766 39312;39313 39313 -0.062482655125222664 SAEPPTNEA 9 Unmodified _SAEPPTNEA_ 0 0 0 ENSG00000173320|ENST00000308497|STOX2 ENSG00000173320|ENST00000308497|STOX2 ENSG00000173320|ENST00000308497|STOX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2405700683594 2 458.206347 914.39814 -0.29038 -0.00013305 0.64636 0.00029617 0.35598 0.00016311 458.20658742024057 20.498 1.2607 19.113 18.604 19.865 -1.3847 56 35 2 0 0 0 0.42844 1 3273 3273 24.021 3.5669 1 1269900 40023 6287 26750 26766 39314 39314 -0.062482655125222664 SAEQILPSA 9 Unmodified _SAEQILPSA_ 0 0 0 REV__ENSG00000008869|ENST00000233099|HEATR5B REV__ENSG00000008869|ENST00000233099|HEATR5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22039794921875 2 458.242732 914.470912 0.25903 0.0001187 -0.14761 -6.7641E-05 0.11142 5.1059E-05 458.24246049911534 33.92 0.38233 33.92 33.69 34.073 0 19 10 2 0 0 0 0.45788 1 6185 6185 26.268 2.2476 1 1368700 + 40024 13906 26751 26767 39315 39315 0.010254882809022092 SAEQILPSA 9 Unmodified _SAEQILPSA_ 0 0 0 REV__ENSG00000008869|ENST00000233099|HEATR5B REV__ENSG00000008869|ENST00000233099|HEATR5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2420654296875 2 458.242732 914.470912 -0.51253 -0.00023486 0.38445 0.00017617 -0.12808 -5.8691E-05 458.2428457487984 36.096 0.45966 33.703 33.52 33.979 -2.3938 21 12 2 0 0 0 0.39189 1 6673 6673 26.268 2.2476 1 1203700 + 40025 13906 26751 26767 39316 39316 0.010254882809022092 SAERFCTF 8 Unmodified _SAERFCTF_ 0 0 0 REV__ENST00000421177.6_1_4:4386893-4387597:+|nuORF REV__ENST00000421177.6_1_4:4386893-4387597:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23748779296875 2 480.715827 959.417102 0.070879 3.4073E-05 1.0193 0.00048998 1.0901 0.00052405 480.7162705562654 134.39 0.62657 129.52 129.2 129.82 -4.8726 29 17 2 0 0 0 0.71273 1 25796 25796 12.532 2.3482 1 1806600 + 40026 21510 26752 26768 39317 39317 -0.06423007422461069 SAERKLILL 9 Unmodified _SAERKLILL_ 0 0 0 REV__ENST00000602725.5_1_1:32384828-32384948:-|nuORF REV__ENST00000602725.5_1_1:32384828-32384948:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2637329101562 2 521.834591 1041.65463 -0.5334 -0.00027834 0.85799 0.00044773 0.32459 0.00016938 522.3366273589954 161.76 0.27469 156.62 156.38 156.65 -5.1438 11 7 2 0 0 0 0.76312 1 31389 31389 21.537 3.3906 1 1115400 + 40027 23431 26753 26769 39318 39318 0.13546881782417586 SAFDHFASV 9 Unmodified _SAFDHFASV_ 0 0 0 ENST00000489675.1_1_1:54387326-54394129:-|nuORF;ENSG00000081870|ENST00000194214|IFT25 ENST00000489675.1_1_1:54387326-54394129:-|nuORF ENST00000489675.1_1_1:54387326-54394129:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2590637207031 2 490.727249 979.439946 0.42649 0.00020929 -0.45121 -0.00022142 -0.024723 -1.2132E-05 490.727056033103 106.16 0.58677 106.16 105.81 106.4 0 29 16 2 0 0 0 0.041554 1 20903 20903 74.929 6.8483 1 3315900 40028 1629 26754 26770 39319 39319 -0.050596650333318394 SAFDHFASV 9 Unmodified _SAFDHFASV_ 0 0 0 ENST00000489675.1_1_1:54387326-54394129:-|nuORF;ENSG00000081870|ENST00000194214|IFT25 ENST00000489675.1_1_1:54387326-54394129:-|nuORF ENST00000489675.1_1_1:54387326-54394129:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2676696777344 2 490.727249 979.439946 -0.25027 -0.00012281 0.53144 0.00026079 0.28118 0.00013798 490.7274735138637 110.55 0.76645 106.12 105.74 106.51 -4.4231 53 21 3 0 0 0 0.23744 1 21839 21839 43.858 5.8843 1 3053400 40029 1629 26754 26770 39320 39320 -0.050596650333318394 SAFDHFASV 9 Unmodified _SAFDHFASV_ 0 0 0 ENST00000489675.1_1_1:54387326-54394129:-|nuORF;ENSG00000081870|ENST00000194214|IFT25 ENST00000489675.1_1_1:54387326-54394129:-|nuORF ENST00000489675.1_1_1:54387326-54394129:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2664794921875 2 490.727249 979.439946 -0.075715 -3.7155E-05 0.21477 0.00010539 0.13905 6.8237E-05 490.727365670827 110.68 0.78723 106.19 105.75 106.54 -4.4915 54 21 3 0 0 0 0.086188 1 21293 21293 56.177 0 1 3498700 40030 1629 26754 26770 39321 39321 -0.050596650333318394 SAFDHFASV 9 Unmodified _SAFDHFASV_ 0 0 0 ENST00000489675.1_1_1:54387326-54394129:-|nuORF;ENSG00000081870|ENST00000194214|IFT25 ENST00000489675.1_1_1:54387326-54394129:-|nuORF ENST00000489675.1_1_1:54387326-54394129:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25323486328125 2 490.727249 979.439946 0.39755 0.00019509 -0.23247 -0.00011408 0.16508 8.101E-05 490.7270994080912 110.38 0.77648 106.16 105.74 106.52 -4.2289 49 21 3 0 0 0 0.019872 1 21229 21229 92.491 7.2194 1 3593700 40031 1629 26754 26770 39322 39322 -0.050596650333318394 SAFGHGAA 8 Unmodified _SAFGHGAA_ 0 0 0 REV__YTHDC2|p.R517H|1|0.2|ENSG00000047188|chr5:113548595-113548595|G/A|missense_variant REV__YTHDC2|p.R517H|1|0.2|ENSG00000047188|chr5:113548595-113548595|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 359.22564697265625 2 359.16937 716.324188 NaN NaN NaN NaN NaN NaN NaN 98.24 1 93.971 93.471 94.471 -4.2692 0 0 0 0.21486 1 18776 18776 2.5775 0 1 + 40032 25551 26755 26771 39323 39323 -0.04532144093525403 SAGLAFSLY 9 Unmodified _SAGLAFSLY_ 0 0 0 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1653137207031 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 72.481 1 69.17 68.67 69.67 -3.3107 0 0 0 0.23508 1 14125 14125 4.897 0 1 40033 4778 26756 26772 39324 39324 0.00354693631857117 SAGMLCALTTL 11 Unmodified _SAGMLCALTTL_ 0 0 0 ENST00000475012.5_1_3:62203523-62278979:+|nuORF;nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG ENST00000475012.5_1_3:62203523-62278979:+|nuORF ENST00000475012.5_1_3:62203523-62278979:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.276123046875 2 540.775028 1079.5355 0.74742 0.00040419 -1.1212 -0.00060632 -0.37378 -0.00020213 540.7743409365063 108.96 0.70131 104.77 104.39 105.09 -4.1826 29 19 2 0 0 0 0.14034 1 20966 20966 8.8968 0 1 2681900 40034 4572 26757 26773 39325 39325 -0.0010839622898402013 SAGPFVGWV 9 Unmodified _SAGPFVGWV_ 0 0 0 ENST00000343986.8_1_20:60962923-60963562:+|nuORF ENST00000343986.8_1_20:60962923-60963562:+|nuORF ENST00000343986.8_1_20:60962923-60963562:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23583984375 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 30.738 1 28.845 28.345 29.345 -1.8928 0 0 0 0.23508 1 5280 5280 7.2892 0.93513 1 40035 8882 26758 26774 39326 39326 -0.002538693027076988 SAGQGAND 8 Unmodified _SAGQGAND_ 0 0 0 SPECC1L|p.N262Kfs*2|1|0.39|ENSG00000100014|chr22:24321760-24321761|-/A|frameshift_variant;SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant;SPECC1L|p.N785Mfs*11|1|0.38|ENSG00000100014|chr22:24330383-24330383|A/-|frameshift_variant;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L SPECC1L|p.N262Kfs*2|1|0.39|ENSG00000100014|chr22:24321760-24321761|-/A|frameshift_variant SPECC1L|p.N262Kfs*2|1|0.39|ENSG00000100014|chr22:24321760-24321761|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2049865722656 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 43.842 1 41.076 40.576 41.576 -2.7661 0 0 0 0.2396 1 7923 7923 0.30703 0 1 40036 1919 26759 26775 39327 39327 -0.08221646061053889 SAHMCTFDFMA 11 Unmodified _SAHMCTFDFMA_ 0 0 0 REV__MICAL3|p.Y375H|1|0.11|ENSG00000243156|chr22:17896807-17896807|A/G|missense_variant REV__MICAL3|p.Y375H|1|0.11|ENSG00000243156|chr22:17896807-17896807|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7574462890625 2 630.745944 1259.47734 NaN NaN NaN NaN NaN NaN NaN 119.74 1 115.22 114.72 115.72 -4.5221 0 0 0 0.22632 1 23611 23611 0.026206 0 1 + 40037 23857 26760 26776 39328 39328 -0.14202401145894328 SAHRNLRHP 9 Unmodified _SAHRNLRHP_ 0 0 0 ENST00000514736.1_1_4:178824969-178828914:-|nuORF ENST00000514736.1_1_4:178824969-178828914:-|nuORF ENST00000514736.1_1_4:178824969-178828914:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7763061523438 2 544.29703 1086.57951 0.036189 1.9698E-05 -1.4137 -0.00076949 -1.3775 -0.00074979 544.2961742758961 34.614 0.41462 32.296 32.083 32.498 -2.3175 21 11 3 0 0 0 0.84208 1 6354 6354 7.2892 0 1 1478000 40038 10775 26761 26777 39329 39329 0.039681370945800154 SAHVDILEY 9 Unmodified _SAHVDILEY_ 0 0 0 nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;KIAA1549L|p.T1376Pfs*16|1|0.38|ENSG00000110427|chr11:33606772-33606772|C/-|frameshift_variant;KIAA1549L|p.T1376Hfs*62|1|0.19|ENSG00000110427|chr11:33606771-33606772|-/C|frameshift_variant;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7008666992188 2 523.761289 1045.50803 0.25196 0.00013196 -0.26229 -0.00013738 -0.010336 -5.4136E-06 523.7611475397273 109.89 1.7014 109.89 109.36 111.07 0 160 48 5 0 0 0 0.38188 1 21806 21806 26.884 0 1 210210000 40039 2575 26762 26778 39330 39330 -0.01290840173351171 SAHVDILEY 9 Unmodified _SAHVDILEY_ 0 0 0 nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;KIAA1549L|p.T1376Pfs*16|1|0.38|ENSG00000110427|chr11:33606772-33606772|C/-|frameshift_variant;KIAA1549L|p.T1376Hfs*62|1|0.19|ENSG00000110427|chr11:33606771-33606772|-/C|frameshift_variant;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6830444335938 2 523.761289 1045.50803 NaN NaN NaN NaN NaN NaN NaN 116.17 1 111.81 111.31 112.31 -4.3585 0 0 0 0.22621 1 22366 22366 15.847 1.0089 1 40040 2575 26762 26778 39331 39331 -0.01290840173351171 SAHVDILEY 9 Unmodified _SAHVDILEY_ 0 0 0 nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;KIAA1549L|p.T1376Pfs*16|1|0.38|ENSG00000110427|chr11:33606772-33606772|C/-|frameshift_variant;KIAA1549L|p.T1376Hfs*62|1|0.19|ENSG00000110427|chr11:33606771-33606772|-/C|frameshift_variant;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.761289 1045.50803 0.59817 0.0003133 -0.62005 -0.00032476 -0.021881 -1.146E-05 523.7609395099001 114.08 1.7502 109.77 109.23 110.98 -4.3136 -0.062895 -0.00026004 NaN 26.884 163 49 5 NaN NaN NaN NaN 0 NaN NaN 0 236080000 40041 2575 26762 26778 -0.01290840173351171 SAHWLKSS 8 Unmodified _SAHWLKSS_ 0 0 0 BPIFB1|p.R316W|1|0.31|ENSG00000125999|chr20:33302377-33302377|C/T|missense_variant BPIFB1|p.R316W|1|0.31|ENSG00000125999|chr20:33302377-33302377|C/T|missense_variant BPIFB1|p.R316W|1|0.31|ENSG00000125999|chr20:33302377-33302377|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23858642578125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 94.89 1 94.89 94.39 95.39 0 0 0 0 0.21486 1 18585 18585 9.3474 0 1 40042 326 26763 26779 39332 39332 0.0003634506618936939 SAIAISHTGV 10 Unmodified _SAIAISHTGV_ 0 0 0 nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2;TENM2|p.N1524Tfs*20|1|0.1|ENSG00000145934|chr5:168218458-168218458|A/-|frameshift_variant;TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant nc|ENSG00000145934|Q9NT68-2|TENM2 nc|ENSG00000145934|Q9NT68-2|TENM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7223205566406 2 478.263999 954.513445 0.20446 9.7785E-05 -0.34698 -0.00016595 -0.14253 -6.8165E-05 478.26372547494327 38.131 0.41386 35.726 35.535 35.948 -2.4049 19 11 2 0 0 0 0.26497 1 6751 6751 39.95 10.109 1 2777600 40043 4630 26764 26780 39333 39333 0.03436883409131042 SAIAISHTGV 10 Unmodified _SAIAISHTGV_ 0 0 0 nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2;TENM2|p.N1524Tfs*20|1|0.1|ENSG00000145934|chr5:168218458-168218458|A/-|frameshift_variant;TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant nc|ENSG00000145934|Q9NT68-2|TENM2 nc|ENSG00000145934|Q9NT68-2|TENM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.263999 954.513445 -0.33667 -0.00016102 0.54613 0.00026119 0.20946 0.00010018 478.2642031142981 38.247 0.3083 35.778 35.609 35.917 -2.4688 -0.028896 0.00043425 NaN 39.95 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3160600 40044 4630 26764 26780 0.03436883409131042 SAIAISHTGV 10 Unmodified _SAIAISHTGV_ 0 0 0 nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2;TENM2|p.N1524Tfs*20|1|0.1|ENSG00000145934|chr5:168218458-168218458|A/-|frameshift_variant;TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant nc|ENSG00000145934|Q9NT68-2|TENM2 nc|ENSG00000145934|Q9NT68-2|TENM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.263999 954.513445 0.053702 2.5684E-05 0.2053 9.8187E-05 0.259 0.00012387 478.2640050438018 38.223 0.38824 35.781 35.594 35.983 -2.4419 -0.025752 0.00010824 NaN 39.95 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3165200 40045 4630 26764 26780 0.03436883409131042 SAISLQYVTN 10 Unmodified _SAISLQYVTN_ 0 0 0 REV__ENST00000553480.1_1_14:45332380-45332650:-|nuORF REV__ENST00000553480.1_1_14:45332380-45332650:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7681274414062 2 548.287671 1094.56079 0.10825 5.9353E-05 0.77215 0.00042336 0.8804 0.00048271 548.2880987014273 43.734 0.28049 40.944 40.736 41.017 -2.79 10 7 2 0 0 0 0.85223 1 8205 8205 8.7454 0.58988 1 599800 + 40046 22961 26765 26781 39334 39334 0.01729117889499321 SAKAKGST 8 Unmodified _SAKAKGST_ 0 0 0 nc|ENSG00000074855|Q9HCE9-2|ANO8;ENSG00000074855|ENST00000159087|ANO8;ENST00000597643.5_1_19:17434328-17439993:-|nuORF nc|ENSG00000074855|Q9HCE9-2|ANO8 nc|ENSG00000074855|Q9HCE9-2|ANO8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2116394042969 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 15.339 1 14.117 13.617 14.617 -1.2219 0 0 0 0.2396 1 2141 2141 0.12286 0 1 40047 1505 26766 26782 39335 39335 0.023649672835176716 SAKNQSGPTA 10 Unmodified _SAKNQSGPTA_ 0 0 0 REV__nc|ENSG00000069020|O15021-2|MAST4 REV__nc|ENSG00000069020|O15021-2|MAST4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24322509765625 2 480.740888 959.467223 -0.037107 -1.7839E-05 1.2881 0.00061925 1.251 0.00060141 480.74146999471003 53.604 1.0013 53.604 53.317 54.318 0 47 27 2 0 0 0 0.5575 1 10172 10172 21.537 0 1 1461900 + 40048 14237 26767 26783 39336 39336 -0.014131814929442044 SALDTITTV 9 Unmodified _SALDTITTV_ 0 0 0 KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant;ENSG00000138160|ENST00000260731|KIF11 KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5353698730469 2 460.75039 919.486227 0.12228 5.6339E-05 0.23471 0.00010814 0.35699 0.00016448 460.75044700580435 114.74 0.82247 110.19 109.76 110.58 -4.555 65 22 4 0 0 0 0.1793 1 22004 22004 39.957 5.8549 1 9333300 40049 4157 26768 26784 39337 39337 0.023263550780825426 SALDTITTV 9 Unmodified _SALDTITTV_ 0 0 0 KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant;ENSG00000138160|ENST00000260731|KIF11 KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5220642089844 2 460.75039 919.486227 0.53499 0.0002465 -0.21052 -9.6998E-05 0.32447 0.0001495 460.75022520526636 114.48 0.87321 110.16 109.71 110.59 -4.3136 63 24 3 0 0 0 0.10297 1 22053 22053 54.774 6.4277 1 10090000 40050 4157 26768 26784 39338 39338 0.023263550780825426 SALDTITTV 9 Unmodified _SALDTITTV_ 0 0 0 KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant;ENSG00000138160|ENST00000260731|KIF11 KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.75039 919.486227 -0.14068 -6.4818E-05 0.4609 0.00021236 0.32022 0.00014754 460.7505331265317 114.52 0.92174 110.04 109.54 110.46 -4.4726 -0.10089 0.00030555 NaN 54.774 64 25 3 NaN NaN NaN NaN 0 NaN NaN 0 9927100 40051 4157 26768 26784 0.023263550780825426 SALECEYIP 9 Unmodified _SALECEYIP_ 0 0 0 REV__nc|ENSG00000187889|Q5VWT5-2|FYB2 REV__nc|ENSG00000187889|Q5VWT5-2|FYB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 512.2470703125 2 512.736425 1023.4583 0.042541 2.1812E-05 -2.3883 -0.0012246 -2.3457 -0.0012027 513.2370502568901 160.74 0.63094 155.95 155.58 156.21 -4.7952 30 17 2 0 0 0 0.38406 1 32013 32013 1.6919 0 1 3278900 + 40052 19119 26769 26785 39339 39339 -0.05249291173640813 SALIQAQVSQ 10 Unmodified _SALIQAQVSQ_ 0 0 0 REV__nc|ENSG00000133612|Q96P47|AGAP3 REV__nc|ENSG00000133612|Q96P47|AGAP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.27978515625 2 522.787838 1043.56112 -0.025829 -1.3503E-05 -0.39905 -0.00020862 -0.42488 -0.00022212 523.2876747462674 160.04 0.18185 155.24 155.19 155.37 -4.7952 5 4 2 0 0 0 0.90091 1 31821 31821 3.2813 0 1 1166600 + 40053 16170 26770 26786 39340 39340 0.04108537609317864 SALLTRDPS 9 Unmodified _SALLTRDPS_ 0 0 0 REV__AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant REV__AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7651672363281 2 480.261456 958.50836 0.13998 6.7228E-05 -0.024237 -1.164E-05 0.11575 5.5588E-05 480.2614212296994 61.289 0.938 58.05 57.581 58.519 -3.2395 76 26 4 0 0 0 0.5685 1 11483 11483 15.248 0.41021 1 17779000 + 40054 13035 26771 26787 39341 39341 0.02744579546526893 SALNCLAARY 10 Unmodified _SALNCLAARY_ 0 0 0 REV__nc|ENSG00000241644|O95050-2|INMT REV__nc|ENSG00000241644|O95050-2|INMT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2792358398438 2 541.276583 1080.53861 NaN NaN NaN NaN NaN NaN NaN 85.909 1 81.959 81.459 82.459 -3.9503 0 0 0 2.8426 1 16347 16347 1.9275 0.18523 1 + 40055 19786 26772 26788 39342 39342 0.0015661494005598797 SALQLPTEA 9 Unmodified _SALQLPTEA_ 0 0 0 REV__ENSG00000166016|ENST00000435224|ABTB2 REV__ENSG00000166016|ENST00000435224|ABTB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2501220703125 2 465.250557 928.486562 1.1254 0.00052359 -0.73543 -0.00034216 0.38997 0.00018143 465.250448624995 25.651 0.17566 24.002 23.859 24.035 -1.6482 6 4 2 0 0 0 0.54076 1 4498 4498 17.113 2.2746 1 736500 + 40056 17817 26773 26789 39343 39343 0.01945774797957256 SALRDPESPD 10 Unmodified _SALRDPESPD_ 0 0 0 REV__PI4K2B|p.K243Ifs*7|1|0.06|ENSG00000038210|chr4:25256645-25256646|-/TTTGCATTAT|frameshift_variant REV__PI4K2B|p.K243Ifs*7|1|0.06|ENSG00000038210|chr4:25256645-25256646|-/TTTGCATTAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7728271484375 2 543.756735 1085.49892 NaN NaN NaN NaN NaN NaN NaN 105.08 1 100.71 100.21 101.21 -4.3764 0 0 0 0.22588 1 20141 20141 8.1555 0 1 + 40057 14037 26774 26790 39344 39344 -0.04041233529665078 SALRTFGVID 10 Unmodified _SALRTFGVID_ 0 0 0 REV__ADCY2|p.R914Sfs*9|1|0.46|ENSG00000078295|chr5:7802326-7802327|-/T|frameshift_variant REV__ADCY2|p.R914Sfs*9|1|0.46|ENSG00000078295|chr5:7802326-7802327|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2018737792969 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 63.888 1 63.888 63.388 64.388 0 0 0 0 0.22588 1 12293 12293 7.4771 0.37534 1 + 40058 12955 26775 26791 39345 39345 0.0461712798901317 SALSYDTAY 9 Unmodified _SALSYDTAY_ 0 0 0 tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1 tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1 tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 990.3745727539062 1 990.441468 989.434192 0.34597 0.00034266 0.62619 0.0006202 0.97216 0.00096286 990.4419286437495 96.188 0.4554 91.953 91.776 92.231 -4.2348 18 12 2 0 0 0 0.11447 1 18356 18356 50.855 10.898 1 1309300 40059 26485 26776 26792 39346 39346 -0.06094808335660673 SALTALISQ 9 Unmodified _SALTALISQ_ 0 0 0 ENST00000466901.5_1_2:232653280-232656595:+|nuORF;ENST00000492423.5_1_2:232651186-232653667:+|nuORF;ENSG00000144524|ENST00000350033|COPS7B;nc|ENSG00000144524|Q9H9Q2-3|COPS7B ENST00000466901.5_1_2:232653280-232656595:+|nuORF ENST00000466901.5_1_2:232653280-232656595:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7649841308594 2 452.260925 902.507297 0.38643 0.00017477 -0.47587 -0.00021522 -0.089446 -4.0453E-05 452.2606715070912 39.773 1.1266 39.773 39.372 40.499 0 83 31 5 0 0 0 0.35556 1 7355 7355 4.7159 0 1 148060000 40060 4557 26777 26793 39347 39347 0.05214365177630498 SALTAPASPF 10 Unmodified _SALTAPASPF_ 0 0 0 REV__HNRNPDL|p.F253Lfs*35|1|0.22|ENSG00000152795|chr4:82428033-82428033|A/-|frameshift_variant REV__HNRNPDL|p.F253Lfs*35|1|0.22|ENSG00000152795|chr4:82428033-82428033|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2535400390625 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 43.141 1 40.489 39.989 40.989 -2.6523 0 0 0 0.22544 1 7782 7782 19.257 0 1 + 40061 17123 26778 26794 39348 39348 0.00982078660570096 SALVSQPVD 9 Unmodified _SALVSQPVD_ 0 0 0 ENST00000405362.1_1_1:174969586-174969718:+|nuORF ENST00000405362.1_1_1:174969586-174969718:+|nuORF ENST00000405362.1_1_1:174969586-174969718:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2337341308594 2 458.242732 914.470912 0.13532 6.2011E-05 -0.09944 -4.5568E-05 0.035884 1.6444E-05 458.2426881381453 39.374 0.41727 36.969 36.756 37.173 -2.4049 16 11 2 0 0 0 0.59847 1 6990 6990 0.12781 0 1 592500 40062 9532 26779 26795 39349 39349 0.010254882809135779 SAMEVVPAL 9 Unmodified _SAMEVVPAL_ 0 0 0 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21;FBXO21|p.I169Ffs*11|3|0.25|ENSG00000135108|chr12:117177607-117177607|T/-|frameshift_variant;FBXO21|p.A106Lfs*3|1|0.14|ENSG00000135108|chr12:117189287-117189287|T/-|frameshift_variant;FBXO21|p.E145*|1|0.31|ENSG00000135108|chr12:117186514-117186515|-/A|frameshift_variant;FBXO21|p.F144Lfs*9|1|0.32|ENSG00000135108|chr12:117186515-117186515|A/-|frameshift_variant ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.24017333984375 2 458.744053 915.473554 -0.010086 -4.6269E-06 0.17835 8.1819E-05 0.16827 7.7192E-05 458.74408862117053 146.45 0.75761 141.76 141.47 142.23 -4.6868 34 21 2 0 0 0 0.091177 1 29054 29054 70.716 17.14 1 5223500 40063 3901 26780 26796 39350 39350 0.0124362041420909 SAMEVVPAL 9 Unmodified _SAMEVVPAL_ 0 0 0 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21;FBXO21|p.I169Ffs*11|3|0.25|ENSG00000135108|chr12:117177607-117177607|T/-|frameshift_variant;FBXO21|p.A106Lfs*3|1|0.14|ENSG00000135108|chr12:117189287-117189287|T/-|frameshift_variant;FBXO21|p.E145*|1|0.31|ENSG00000135108|chr12:117186514-117186515|-/A|frameshift_variant;FBXO21|p.F144Lfs*9|1|0.32|ENSG00000135108|chr12:117186515-117186515|A/-|frameshift_variant ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.744053 915.473554 0.25192 0.00011556 -0.14821 -6.7988E-05 0.10371 4.7577E-05 458.7439647677069 141.76 0.55196 141.76 141.5 142.05 0 -0.052834 -0.00013318 NaN 70.716 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2839900 40064 3901 26780 26796 0.0124362041420909 SAMEVVPAL 9 Unmodified _SAMEVVPAL_ 0 0 0 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21;FBXO21|p.I169Ffs*11|3|0.25|ENSG00000135108|chr12:117177607-117177607|T/-|frameshift_variant;FBXO21|p.A106Lfs*3|1|0.14|ENSG00000135108|chr12:117189287-117189287|T/-|frameshift_variant;FBXO21|p.E145*|1|0.31|ENSG00000135108|chr12:117186514-117186515|-/A|frameshift_variant;FBXO21|p.F144Lfs*9|1|0.32|ENSG00000135108|chr12:117186515-117186515|A/-|frameshift_variant ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.744053 915.473554 0.064039 2.9378E-05 0.083644 3.8371E-05 0.14768 6.7749E-05 458.74398312596793 147.05 0.83263 141.94 141.51 142.35 -5.1108 0.12369 7.9542E-05 NaN 70.716 38 23 2 NaN NaN NaN NaN 0 NaN NaN 0 3780500 40065 3901 26780 26796 0.0124362041420909 SAMEVVPAL 9 Unmodified _SAMEVVPAL_ 0 0 0 ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21;FBXO21|p.I169Ffs*11|3|0.25|ENSG00000135108|chr12:117177607-117177607|T/-|frameshift_variant;FBXO21|p.A106Lfs*3|1|0.14|ENSG00000135108|chr12:117189287-117189287|T/-|frameshift_variant;FBXO21|p.E145*|1|0.31|ENSG00000135108|chr12:117186514-117186515|-/A|frameshift_variant;FBXO21|p.F144Lfs*9|1|0.32|ENSG00000135108|chr12:117186515-117186515|A/-|frameshift_variant ENSG00000135108|ENST00000622495|FBXO21 ENSG00000135108|ENST00000622495|FBXO21 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 458.744053 915.473554 0.3192 0.00014643 -0.16911 -7.758E-05 0.15008 6.8849E-05 458.7439296041386 146.8 0.67757 141.8 141.5 142.18 -5 -0.01938 -0.00015236 NaN 70.716 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2443500 40066 3901 26780 26796 0.0124362041420909 SAMSLILSSA 10 Unmodified _SAMSLILSSA_ 0 0 0 REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25994873046875 2 490.260068 978.505582 NaN NaN NaN NaN NaN NaN NaN 36.022 1 33.745 33.245 34.245 -2.2766 0 0 0 0.22588 1 6347 6347 13.042 0 1 + 40067 14319 26781 26797 39351 39351 0.015469880973682848 SAMSRGHK 8 Unmodified _SAMSRGHK_ 0 0 0 ENST00000428826.6_1_17:40854213-40854450:-|nuORF ENST00000428826.6_1_17:40854213-40854450:-|nuORF ENST00000428826.6_1_17:40854213-40854450:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2220458984375 2 437.221611 872.42867 NaN NaN NaN NaN NaN NaN NaN 169.05 1 164.12 163.62 164.62 -4.9295 0 0 0 0.21486 1 33357 33357 5.2307 0 1 40068 9757 26782 26798 39352 39352 -0.01264765608448215 SANFIYDDF 9 Unmodified _SANFIYDDF_ 0 0 0 ENST00000487445.6_1_2:163215951-163216750:+|nuORF;ENSG00000115271|ENST00000437150|GCA ENST00000487445.6_1_2:163215951-163216750:+|nuORF ENST00000487445.6_1_2:163215951-163216750:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7867431640625 2 546.237647 1090.46074 0.33161 0.00018114 0.049352 2.6958E-05 0.38096 0.0002081 546.2376239632875 136.29 0.77298 136.29 135.88 136.66 0 41 21 4 0 0 0 0.60805 1 26978 26978 12.532 3.7861 1 6880900 40069 2838 26783 26799 39353 39353 -0.08087119444326163 SANFIYDDF 9 Unmodified _SANFIYDDF_ 0 0 0 ENST00000487445.6_1_2:163215951-163216750:+|nuORF;ENSG00000115271|ENST00000437150|GCA ENST00000487445.6_1_2:163215951-163216750:+|nuORF ENST00000487445.6_1_2:163215951-163216750:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.237647 1090.46074 0.24848 0.00013573 0.24382 0.00013318 0.4923 0.00026891 546.237734652753 141.3 0.86749 136.65 136.19 137.06 -4.6493 0.14304 0.00015718 NaN 12.532 41 24 2 NaN NaN NaN NaN 0 NaN NaN 0 8608700 40070 2838 26783 26799 -0.08087119444326163 SANFIYDDF 9 Unmodified _SANFIYDDF_ 0 0 0 ENST00000487445.6_1_2:163215951-163216750:+|nuORF;ENSG00000115271|ENST00000437150|GCA ENST00000487445.6_1_2:163215951-163216750:+|nuORF ENST00000487445.6_1_2:163215951-163216750:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.237647 1090.46074 0.10986 6.0009E-05 -0.013748 -7.5097E-06 0.096111 5.2499E-05 546.2377236769574 141.58 1.1106 136.59 136.17 137.28 -4.9877 0.088172 -0.0001242 NaN 12.532 62 31 3 NaN NaN NaN NaN 0 NaN NaN 0 12590000 40071 2838 26783 26799 -0.08087119444326163 SANFIYDDF 9 Unmodified _SANFIYDDF_ 0 0 0 ENST00000487445.6_1_2:163215951-163216750:+|nuORF;ENSG00000115271|ENST00000437150|GCA ENST00000487445.6_1_2:163215951-163216750:+|nuORF ENST00000487445.6_1_2:163215951-163216750:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.237647 1090.46074 0.35314 0.0001929 0.079196 4.326E-05 0.43234 0.00023616 546.237834937149 141.35 0.88074 136.49 136.22 137.1 -4.8678 -0.018451 -2.2661E-05 NaN 12.532 38 24 2 NaN NaN NaN NaN 0 NaN NaN 0 5467500 40072 2838 26783 26799 -0.08087119444326163 SAPLQLETG 9 Unmodified _SAPLQLETG_ 0 0 0 REV__ENST00000219476.7_1_16:2097712-2098647:+|nuORF REV__ENST00000219476.7_1_16:2097712-2098647:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2490539550781 2 458.242732 914.470912 0.30321 0.00013895 0.49559 0.0002271 0.7988 0.00036605 458.2430133777562 28.388 1.8803 28.388 27.801 29.681 0 155 53 5 0 0 0 0.54076 1 5025 5025 17.113 0 1 86017000 + 40073 20029 26784 26800 39354 39354 0.010254882809022092 SAPNNKGSVS 10 Unmodified _SAPNNKGSVS_ 0 0 0 MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;ENSG00000095777|ENST00000642920|MYO3A MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2434387207031 2 480.740888 959.467223 -0.11915 -5.7282E-05 1.8554 0.00089198 1.7363 0.0008347 480.7418770977577 56.475 0.62115 53.581 53.235 53.856 -2.8944 29 17 2 0 0 0 0.23765 1 10875 10875 41.84 5.7126 1 1743600 40074 1868 26785 26801 39355 39355 -0.014131814929442044 SAQAQPSLL 9 Unmodified _SAQAQPSLL_ 0 0 0 REV__ENST00000504435.1_1_4:887824-888280:-|nuORF REV__ENST00000504435.1_1_4:887824-888280:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2249755859375 2 457.750724 913.486896 0.65484 0.00029975 -0.44597 -0.00020414 0.20887 9.5611E-05 457.7504735450487 28.611 0.30777 26.655 26.502 26.81 -1.9561 10 8 2 0 0 0 0.16619 1 5126 5126 41.84 9.5341 1 302340 + 40075 22460 26786 26802 39356 39356 0.026691945178072274 SAQGWAEIH 9 Unmodified _SAQGWAEIH_ 0 0 0 ENST00000556626.5_3_14:65220425-65220494:-|nuORF ENST00000556626.5_3_14:65220425-65220494:-|nuORF ENST00000556626.5_3_14:65220425-65220494:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.99969482421875 3 333.494524 997.461744 -0.26854 -8.9555E-05 0.040468 1.3496E-05 -0.22807 -7.6059E-05 333.49493188649586 39.841 3.6802 39.841 39.509 43.19 0 271 104 6 0 0 0 0.87262 1 7513 7513 2.7352 0 1 1340100000 40076 11243 26787 26803 39357 39357 -0.03708860284768889 SAQLKRPAR 9 Unmodified _SAQLKRPAR_ 0 0 0 REV__ENSG00000204161|ENST00000374153|TMEM273 REV__ENSG00000204161|ENST00000374153|TMEM273 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.9970703125 3 342.87708 1025.60941 -0.47041 -0.00016129 0.11419 3.9155E-05 -0.35622 -0.00012214 342.8772243895484 16.936 0.24828 15.663 15.552 15.8 -1.2722 11 6 2 0 0 0 0.88284 1 2481 2481 2.4985 1.427 1 198240 + 40077 19515 26788 26804 39358 39358 0.09763076039871521 SAQLKRPAR 9 Unmodified _SAQLKRPAR_ 0 0 0 REV__ENSG00000204161|ENST00000374153|TMEM273 REV__ENSG00000204161|ENST00000374153|TMEM273 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 342.87708 1025.60941 -0.44991 -0.00015426 0.058528 2.0068E-05 -0.39138 -0.0001342 342.87715721042514 15.831 0.48434 15.831 15.438 15.922 0 0.13671 -8.0165E-05 NaN 2.4985 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 493680 + 40078 19515 26788 26804 0.09763076039871521 SAQLKRPAR 9 Unmodified _SAQLKRPAR_ 0 0 0 REV__ENSG00000204161|ENST00000374153|TMEM273 REV__ENSG00000204161|ENST00000374153|TMEM273 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 342.87708 1025.60941 -0.58338 -0.00020003 -0.11279 -3.8672E-05 -0.69617 -0.0002387 342.8773233331317 16.965 0.34736 15.75 15.531 15.878 -1.2159 0.054933 -0.00025639 NaN 2.4985 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 178470 + 40079 19515 26788 26804 0.09763076039871521 SAQLKRPAR 9 Unmodified _SAQLKRPAR_ 0 0 0 REV__ENSG00000204161|ENST00000374153|TMEM273 REV__ENSG00000204161|ENST00000374153|TMEM273 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.87708 1025.60941 -2.0387 -0.00069902 0.86483 0.00029653 -1.1739 -0.00040249 342.8777317073577 17.049 0.59748 15.534 15.412 16.01 -1.5148 -0.16048 0.00074923 NaN 2.4985 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 155390 + 40080 19515 26788 26804 0.09763076039871521 SARFEELQ 8 Unmodified _SARFEELQ_ 0 0 0 REV__AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant REV__AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26751708984375 2 490.245806 978.47706 0.031 1.5198E-05 0.47431 0.00023253 0.50531 0.00024772 490.24606255079675 70.949 0.90073 70.949 70.449 71.349 0 48 25 3 0 0 0 0.88839 1 13679 13679 17.113 0 1 11428000 + 40081 13091 26789 26805 39359 39359 -0.013039934875678227 SARFEELQ 8 Unmodified _SARFEELQ_ 0 0 0 REV__AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant REV__AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2680969238281 2 490.245806 978.47706 0.027865 1.3661E-05 0.10827 5.3079E-05 0.13614 6.674E-05 490.24584669737766 74.236 1.0086 70.872 70.263 71.272 -3.3643 56 28 3 0 0 0 0.70215 1 14403 14403 29.082 0 1 11471000 + 40082 13091 26789 26805 39360 39360 -0.013039934875678227 SARRYASLRP 10 Unmodified _SARRYASLRP_ 0 0 0 REV__ENST00000370355.2_1_10:102107065-102107828:+|nuORF REV__ENST00000370355.2_1_10:102107065-102107828:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 588.8349609375 2 588.833446 1175.65234 NaN NaN NaN NaN NaN NaN NaN 55.13 1 51.994 51.494 52.494 -3.1352 0 0 0 0.22588 1 10182 10182 9.3831 0 1 + 40083 20980 26790 26806 39361 39361 0.07153846097321548 SARTLNNRY 9 Unmodified _SARTLNNRY_ 0 0 0 ENSG00000134757|ENST00000257189|DSG3 ENSG00000134757|ENST00000257189|DSG3 ENSG00000134757|ENST00000257189|DSG3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7864379882812 2 547.788704 1093.56285 NaN NaN NaN NaN NaN NaN NaN 54.385 1 51.247 50.747 51.747 -3.1377 0 0 0 0.22621 1 10063 10063 15.847 1.2655 1 40084 3872 26791 26807 39362 39362 0.019815914179389438 SARYSSGTQ 9 Unmodified _SARYSSGTQ_ 0 0 0 ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant;nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2;ENST00000472424.1_1_1:82447552-82452975:+|nuORF;ENST00000464775.5_1_1:82445609-82456083:+|nuORF ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72393798828125 2 478.725238 955.435923 NaN NaN NaN NaN NaN NaN NaN 167.54 1 162.6 162.1 163.1 -4.948 0 0 0 0.19721 1 32969 32969 24.021 0.87215 1 40085 81 26792 26808 39363 39363 -0.04357754527029556 SASHRYCF 8 Unmodified _SASHRYCF_ 0 0 0 ENST00000302279.7_1_8:42940441-42940672:+|nuORF ENST00000302279.7_1_8:42940441-42940672:+|nuORF ENST00000302279.7_1_8:42940441-42940672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1445007324219 3 324.144838 969.412685 NaN NaN NaN NaN NaN NaN NaN 63.035 1 60.038 59.538 60.538 -2.9975 0 0 0 0.21486 1 12170 12170 3.9444 1.2092 1 40086 8571 26793 26809 39364 39364 -0.07324471845367952 SASPKKQHKI 10 Unmodified _SASPKKQHKI_ 0 0 0 MAGI3|p.Q1293H|1|0.06|ENSG00000081026|chr1:113683447-113683447|A/C|missense_variant MAGI3|p.Q1293H|1|0.06|ENSG00000081026|chr1:113683447-113683447|A/C|missense_variant MAGI3|p.Q1293H|1|0.06|ENSG00000081026|chr1:113683447-113683447|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.20501708984375 3 375.224257 1122.65094 NaN NaN NaN NaN NaN NaN NaN 38.887 1 36.338 35.838 36.838 -2.5491 0 0 0 0.22588 1 7219 7219 6.1918 1.2948 1 40087 12105 26794 26810 39365 39365 0.09452212008568495 SASSAAQQQG 10 Unmodified _SASSAAQQQG_ 0 0 0 REV__ENST00000492136.1_1_3:33434749-33437792:-|nuORF REV__ENST00000492136.1_1_3:33434749-33437792:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.146484375 3 312.145672 933.415188 NaN NaN NaN NaN NaN NaN NaN 70.427 1 66.96 66.46 67.46 -3.467 0 0 0 0.22588 1 13339 13339 0.69767 0.23933 1 + 40088 17150 26795 26811 39366 39366 -0.05418344906706807 SASSGSAY 8 Unmodified _SASSGSAY_ 0 0 0 REV__nc|ENSG00000178209|Q15149-7|PLEC REV__nc|ENSG00000178209|Q15149-7|PLEC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.1579284667969 2 365.156126 728.297698 NaN NaN NaN NaN NaN NaN NaN 102.05 1 97.867 97.367 98.367 -4.1861 0 0 0 0.23749 1 20054 20054 0.12286 0.12286 1 + 40089 18594 26796 26812 39367 39367 -0.07731877775529483 SASSPRGFR 9 Unmodified _SASSPRGFR_ 0 0 0 REV__ENST00000564946.5_1_16:30663032-30664184:+|nuORF REV__ENST00000564946.5_1_16:30663032-30664184:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.18560791015625 3 322.170152 963.488627 -0.42919 -0.00013827 -0.93632 -0.00030165 -1.3655 -0.00043993 322.16981789922573 50.978 0.49254 48.096 47.856 48.348 -2.8824 21 13 2 0 0 0 0.87609 1 9630 9630 7.609 0.88579 1 785750 + 40090 23102 26797 26813 39368 39368 0.00542248326439676 SASSPRGFR 9 Unmodified _SASSPRGFR_ 0 0 0 REV__ENST00000564946.5_1_16:30663032-30664184:+|nuORF REV__ENST00000564946.5_1_16:30663032-30664184:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 322.170152 963.488627 0.044502 1.4337E-05 -1.3675 -0.00044058 -1.323 -0.00042624 322.16966419409175 51.072 0.49371 48.026 47.839 48.333 -3.0453 -0.034751 -0.00022377 NaN 7.609 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 737280 + 40091 23102 26797 26813 0.00542248326439676 SASTVLTA 8 Unmodified _SASTVLTA_ 0 0 0 ENSG00000112742|ENST00000369798|TTK;nc|ENSG00000112742|P33981-2|TTK;TTK|p.L364Pfs*8|1|0.04|ENSG00000112742|chr6:80014568-80014569|-/CCATAAATAGTAG|frameshift_variant ENSG00000112742|ENST00000369798|TTK ENSG00000112742|ENST00000369798|TTK MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2095947265625 2 375.205618 748.396684 NaN NaN NaN NaN NaN NaN NaN 38.989 1 36.547 36.047 37.047 -2.4419 0 0 0 0.23749 1 6952 6952 0.0082765 0 1 40092 2709 26798 26814 39369 39369 0.012421451893601443 SATAGVLR 8 Unmodified _SATAGVLR_ 0 0 0 REV__ENST00000263269.3_1_19:48946008-48947172:+|nuORF REV__ENST00000263269.3_1_19:48946008-48947172:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7257080078125 2 387.727052 773.439552 NaN NaN NaN NaN NaN NaN NaN 54.213 1 51.33 50.83 51.83 -2.8837 0 0 0 0.21486 1 10340 10340 8.5933 0 1 + 40093 20208 26799 26815 39370 39370 0.04376960037461686 SATAPFGNTN 10 Unmodified _SATAPFGNTN_ 0 0 0 REV__ABCG2|p.N418Mfs*16|2|0.27|ENSG00000118777|chr4:88107208-88107208|T/-|frameshift_variant REV__ABCG2|p.N418Mfs*16|2|0.27|ENSG00000118777|chr4:88107208-88107208|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2580871582031 2 490.227613 978.440674 0.78743 0.00038602 -1.0361 -0.00050791 -0.24863 -0.00012189 490.22713403503593 29.217 0.70103 27.261 26.774 27.475 -1.9561 28 19 2 0 0 0 0.37059 1 5278 5278 32.786 7.3864 1 546190 + 40094 12906 26800 26816 39371 39371 -0.049408703842800605 SATAPFGNTN 10 Unmodified _SATAPFGNTN_ 0 0 0 REV__ABCG2|p.N418Mfs*16|2|0.27|ENSG00000118777|chr4:88107208-88107208|T/-|frameshift_variant REV__ABCG2|p.N418Mfs*16|2|0.27|ENSG00000118777|chr4:88107208-88107208|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.227613 978.440674 0.40762 0.00019983 -0.7093 -0.00034772 -0.30168 -0.00014789 490.22727140364157 28.937 0.52379 27.182 26.946 27.469 -1.7552 0.0041034 -0.00011063 NaN 32.786 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 412300 + 40095 12906 26800 26816 -0.049408703842800605 SATLAEEQI 9 Unmodified _SATLAEEQI_ 0 0 0 REV__AARD|p.A51T|1|0.52|ENSG00000205002|chr8:116938394-116938394|G/A|missense_variant REV__AARD|p.A51T|1|0.52|ENSG00000205002|chr8:116938394-116938394|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2453308105469 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 71.999 1 71.999 71.499 72.499 0 0 0 0 0.083828 1 13953 13953 7.4771 4.8458 1 + 40096 12878 26801 26817 39372 39372 -0.005428329272717747 SATLAEEQI 9 Unmodified _SATLAEEQI_ 0 0 0 REV__AARD|p.A51T|1|0.52|ENSG00000205002|chr8:116938394-116938394|G/A|missense_variant REV__AARD|p.A51T|1|0.52|ENSG00000205002|chr8:116938394-116938394|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2454833984375 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 75.713 1 71.99 71.49 72.49 -3.7227 0 0 0 0.09626 1 14325 14325 4.7159 0 1 + 40097 12878 26801 26817 39373 39373 -0.005428329272717747 SATQAQAWRAA 11 Unmodified _SATQAQAWRAA_ 0 0 0 ENST00000491370.1_1_2:220435199-220436548:-|nuORF ENST00000491370.1_1_2:220435199-220436548:-|nuORF ENST00000491370.1_1_2:220435199-220436548:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.72161865234375 3 387.53175 1159.57342 NaN NaN NaN NaN NaN NaN NaN 43.54 1 43.54 43.04 44.04 0 0 0 0 0.23491 1 8154 8154 4.4062 0 1 40098 10524 26802 26818 39374 39374 1.5740723938506562E-05 SAVCAEQSTEG 11 Unmodified _SAVCAEQSTEG_ 0 0 0 ENSG00000205795|ENST00000381813|CYS1 ENSG00000205795|ENST00000381813|CYS1 ENSG00000205795|ENST00000381813|CYS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.5332336425781 3 361.153728 1080.43935 -0.34089 -0.00012311 -1.417 -0.00051175 -1.7579 -0.00063486 361.15350954814585 28.651 0.5908 26.654 26.238 26.829 -1.9962 26 16 2 0 0 0 0.88941 1 4772 4772 0.03141 0.028029 1 472680 40099 7657 26803 26819 39375 39375 -0.09764872535356517 SAVLLVDL 8 Unmodified _SAVLLVDL_ 0 0 0 REV__nc|ENSG00000197774|A4GXA9-2|EME2 REV__nc|ENSG00000197774|A4GXA9-2|EME2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.2445373535156 2 415.255111 828.49567 NaN NaN NaN NaN NaN NaN NaN 82.391 1 78.692 78.192 79.192 -3.6985 0 0 0 0.21486 1 15713 15713 9.3474 0 1 + 40100 13808 26804 26820 39376 39376 0.07456168154271836 SCAAAEAL 8 Unmodified _SCAAAEAL_ 0 0 0 nc|ENSG00000181982|Q6ZUS6-6|CCDC149;nc|ENSG00000181982|Q6ZUS6|CCDC149;nc|ENSG00000181982|Q6ZUS6-5|CCDC149;nc|ENSG00000181982|Q6ZUS6-4|CCDC149;ENSG00000181982|ENST00000635206|CCDC149 nc|ENSG00000181982|Q6ZUS6-6|CCDC149 nc|ENSG00000181982|Q6ZUS6-6|CCDC149 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.89764404296875 2 368.170721 734.32689 NaN NaN NaN NaN NaN NaN NaN 64.124 1 61.126 60.626 61.626 -2.9975 0 0 0 0.23366 1 12399 12399 0.62683 0 1 40101 6755 26805 26821 39377 39377 -0.05090056750907479 SCARKSARA 9 Unmodified _SCARKSARA_ 0 0 0 nc|ENSG00000166762|Q96P56-3|CATSPER2 nc|ENSG00000166762|Q96P56-3|CATSPER2 nc|ENSG00000166762|Q96P56-3|CATSPER2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1716003417969 3 317.171387 948.492332 NaN NaN NaN NaN NaN NaN NaN 179.49 1 174.62 174.12 175.12 -4.868 0 0 0 0.23508 1 35759 35759 1.0715 0 1 40102 12441 26806 26822 39378 39378 0.016025948286255698 SCCCCWCLCC 10 Unmodified _SCCCCWCLCC_ 0 0 0 REV__ENSG00000171700|ENST00000395042|RGS19 REV__ENSG00000171700|ENST00000395042|RGS19 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.098388671875 3 376.097364 1125.27026 NaN NaN NaN NaN NaN NaN NaN 4.0734 1 3.0334 2.5334 3.5334 -1.04 0 0 0 0.22588 1 18 18 0 0 1 + 40103 18241 26807 26823 39379 39379 -0.28736294553254993 SCCCCWCLCC 10 Unmodified _SCCCCWCLCC_ 0 0 0 REV__ENSG00000171700|ENST00000395042|RGS19 REV__ENSG00000171700|ENST00000395042|RGS19 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.10504150390625 3 376.097364 1125.27026 NaN NaN NaN NaN NaN NaN NaN 10.795 1 9.7013 9.2013 10.201 -1.0936 0 0 0 0.22588 1 1248 1248 0 0 1 + 40104 18241 26807 26823 39380 39380 -0.28736294553254993 SCCEDCLF 8 Unmodified _SCCEDCLF_ 0 0 0 REV__nc|ENSG00000139436|Q14161-11|GIT2 REV__nc|ENSG00000139436|Q14161-11|GIT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2318115234375 2 460.153357 918.292161 0.47538 0.00021875 0.72627 0.00033419 1.2017 0.00055294 460.1535078043321 49.216 0.66917 49.216 48.843 49.512 0 27 18 2 0 0 0 8448 1 9283 9283 1.3295 1.3295 1 1261900 + 40105 16517 26808 26824 39381 39381 -0.17025383945519934 SCCEDCLF 8 Unmodified _SCCEDCLF_ 0 0 0 REV__nc|ENSG00000139436|Q14161-11|GIT2 REV__nc|ENSG00000139436|Q14161-11|GIT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2402038574219 2 460.153357 918.292161 0.47538 0.00021875 0.72627 0.00033419 1.2017 0.00055294 460.1535078043321 49.216 0.66917 49.216 48.843 49.512 0 27 18 2 0 0 0 0.89926 1 9363 9363 1.3295 1.3295 1 1261900 + 40106 16517 26808 26824 39382 39382 -0.17025383945519934 SCCSCCPAEC 10 Unmodified _SCCSCCPAEC_ 0 0 0 ENSG00000087250|ENST00000200691|MT3;ENST00000566576.1_1_16:56623516-56624858:+|nuORF;MT3|p.E43K|1|0.26|ENSG00000087250|chr16:56590869-56590869|G/A|missense_variant ENSG00000087250|ENST00000200691|MT3 ENSG00000087250|ENST00000200691|MT3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 503.3761901855469 2 503.133784 1004.25301 NaN NaN NaN NaN NaN NaN NaN 162.59 1 157.8 157.3 158.3 -4.7898 0 0 0 0.22588 1 32359 32359 0 0 1 40107 1709 26809 26825 39383 39383 -0.2489417556304261 SCCSCCPMSCA 11 Unmodified _SCCSCCPMSCA_ 0 0 0 ENSG00000205362|ENST00000290705|MT1A ENSG00000205362|ENST00000290705|MT1A ENSG00000205362|ENST00000290705|MT1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7916870117188 2 547.648744 1093.28293 NaN NaN NaN NaN NaN NaN NaN 57.255 1 54.065 53.565 54.565 -3.1895 0 0 0 0.23698 1 10628 10628 0 0 1 40108 7645 26810 26826 39384 39384 -0.25997559889356125 SCCSCCPMSCA 11 Unmodified _SCCSCCPMSCA_ 0 0 0 ENSG00000205362|ENST00000290705|MT1A ENSG00000205362|ENST00000290705|MT1A ENSG00000205362|ENST00000290705|MT1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7825927734375 2 547.648744 1093.28293 NaN NaN NaN NaN NaN NaN NaN 153.56 1 148.29 147.79 148.79 -5.2669 0 0 0 0.23698 1 29765 29765 0 0 1 40109 7645 26810 26826 39385 39385 -0.25997559889356125 SCCSCMCDED 10 Unmodified _SCCSCMCDED_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.786865234375 2 548.131438 1094.24832 NaN NaN NaN NaN NaN NaN NaN 71.024 1 71.024 70.524 71.524 0 0 0 0 2.8426 1 13755 13755 0 0 1 40110 6230 26811 26827 39386 39386 -0.29503104496438937 SCDDDDDNDSN 11 Unmodified _SCDDDDDNDSN_ 0 0 0 REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31 REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.4986572265625 3 405.451049 1213.33132 NaN NaN NaN NaN NaN NaN NaN 49.102 1 49.102 48.602 49.602 0 0 0 0 0.22632 1 9279 9279 0.172 0.14579 1 + 40111 16847 26812 26828 39387 39387 -0.2668133364725236 SCDDGSYESDC 11 Unmodified _SCDDGSYESDC_ 0 0 0 REV__ENSG00000116147|ENST00000367674|TNR REV__ENSG00000116147|ENST00000367674|TNR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2706909179688 2 590.673893 1179.33323 NaN NaN NaN NaN NaN NaN NaN 63.959 1 60.702 60.202 61.202 -3.2567 0 0 0 0.22632 1 12002 12002 0.094841 0 1 + 40112 15470 26813 26829 39388 39388 -0.2492599616298321 SCDDNGCDC 9 Unmodified _SCDDNGCDC_ 0 0 0 ENST00000509537.1_1_4:187511811-187516897:-|nuORF ENST00000509537.1_1_4:187511811-187516897:-|nuORF ENST00000509537.1_1_4:187511811-187516897:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.9716491699219 3 311.079065 930.215367 NaN NaN NaN NaN NaN NaN NaN 16.049 1 14.833 14.333 15.333 -1.2159 0 0 0 0.23508 1 2507 2507 0 0 1 40113 10734 26814 26830 39389 39389 -0.25253227232644804 SCDPGSSLESF 11 Unmodified _SCDPGSSLESF_ 0 0 0 REV__ENSG00000250423|ENST00000691062|KIAA1210 REV__ENSG00000250423|ENST00000691062|KIAA1210 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 564.72705078125 2 564.729329 1127.4441 NaN NaN NaN NaN NaN NaN NaN 42.475 1 39.869 39.369 40.369 -2.606 0 0 0 0.22501 1 7641 7641 12.241 0.60036 1 + 40114 19827 26815 26831 39390 39390 -0.1145198839258228 SCDYCERQ 8 Unmodified _SCDYCERQ_ 0 0 0 REV__LRP6|p.N38Wfs*23|1|0.37|ENSG00000070018|chr12:12244598-12244599|TT/-|frameshift_variant REV__LRP6|p.N38Wfs*23|1|0.37|ENSG00000070018|chr12:12244598-12244599|TT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.8687744140625 3 335.125115 1002.35352 NaN NaN NaN NaN NaN NaN NaN 34.86 1 32.482 31.982 32.982 -2.3785 0 0 0 0.2386 1 6410 6410 0.12286 0.049601 1 + 40115 23817 26816 26832 39391 39391 -0.14756735921866948 SCESEYTNN 9 Unmodified _SCESEYTNN_ 0 0 0 ENST00000473614.1_1_2:216229565-216230414:-|nuORF ENST00000473614.1_1_2:216229565-216230414:-|nuORF ENST00000473614.1_1_2:216229565-216230414:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6890869140625 2 523.690204 1045.36585 NaN NaN NaN NaN NaN NaN NaN 89.337 1 85.293 84.793 85.793 -4.0443 0 0 0 0.19652 1 17022 17022 0.073264 0 1 40116 10242 26817 26833 39392 39392 -0.15501420977830094 SCFGGAHA 8 Unmodified _SCFGGAHA_ 0 0 0 REV__ENST00000580296.5_3_17:80416248-80417251:+|nuORF REV__ENST00000580296.5_3_17:80416248-80417251:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.213623046875 2 375.155406 748.296258 NaN NaN NaN NaN NaN NaN NaN 64.451 1 61.454 60.954 61.954 -2.9975 0 0 0 0.23899 1 12466 12466 1.3295 0 1 + 40117 23236 26818 26834 39393 39393 -0.0879579034527751 SCGCDFCS 8 Unmodified _SCGCDFCS_ 0 0 0 REV__ENST00000407765.1_1_6:131505690-131506047:-|nuORF REV__ENST00000407765.1_1_6:131505690-131506047:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.11383056640625 2 411.116774 820.218996 NaN NaN NaN NaN NaN NaN NaN 6.2964 1 5.2518 4.7518 5.7518 -1.0446 0 0 0 0.21486 1 416 416 0.69038 0.69038 1 + 40118 21396 26819 26835 39394 39394 -0.19830512668113442 SCGCSQCNCC 10 Unmodified _SCGCSQCNCC_ 0 0 0 ENSG00000204572|ENST00000398531|KRTAP5-10 ENSG00000204572|ENST00000398531|KRTAP5-10 ENSG00000204572|ENST00000398531|KRTAP5-10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 504.12841796875 2 504.129033 1006.24351 NaN NaN NaN NaN NaN NaN NaN 19.714 1 18.079 17.579 18.579 -1.6351 0 0 0 0.22588 1 2993 2993 0 0 1 40119 7590 26820 26836 39395 39395 -0.25935943848571696 SCGERSPPP 9 Unmodified _SCGERSPPP_ 0 0 0 ENSG00000107816|ENST00000454422|LZTS2 ENSG00000107816|ENST00000454422|LZTS2 ENSG00000107816|ENST00000454422|LZTS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2500305175781 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 109.1 1 104.72 104.22 105.22 -4.3776 0 0 0 0.23508 1 21503 21503 6.7232 0 1 40120 2440 26821 26837 39396 39396 -0.05980195427844137 SCGLFHGIQ 9 Unmodified _SCGLFHGIQ_ 0 0 0 REV__PTGR2|p.D211Tfs*30|1|0.35|ENSG00000140043|chr14:73879201-73879201|A/-|frameshift_variant REV__PTGR2|p.D211Tfs*30|1|0.35|ENSG00000140043|chr14:73879201-73879201|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23260498046875 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 24.438 1 22.789 22.289 23.289 -1.6482 0 0 0 0.1761 1 4254 4254 26.884 1.4843 1 + 40121 16558 26822 26838 39397 39397 -0.03307014668496322 SCGTNRYK 8 Unmodified _SCGTNRYK_ 0 0 0 REV__RORA|p.F145Lfs*38|1|0.09|ENSG00000069667|chr15:60511611-60511611|A/-|frameshift_variant REV__RORA|p.F145Lfs*38|1|0.09|ENSG00000069667|chr15:60511611-60511611|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648864746094 3 310.14836 927.42325 0.29438 9.1301E-05 0.62985 0.00019535 0.92423 0.00028665 310.1484806840251 72.184 0.42979 68.557 68.301 68.731 -3.6275 16 11 2 0 0 0 8448 1 13639 13639 0.62683 0.56284 1 595900 + 40122 24575 26823 26839 39398 39398 -0.04336489190939119 SCHCCKPCDC 10 Unmodified _SCHCCKPCDC_ 0 0 0 REV__SLC34A2|p.R640H|1|0.36|ENSG00000157765|chr4:25676595-25676595|G/A|missense_variant REV__SLC34A2|p.R640H|1|0.36|ENSG00000157765|chr4:25676595-25676595|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 549.7119140625 2 549.668325 1097.3221 NaN NaN NaN NaN NaN NaN NaN 163.21 1 158.03 157.53 158.53 -5.1878 0 0 0 2.8426 1 31751 31751 0 0 1 + 40123 24638 26824 26840 39399 39399 -0.22267091543471906 SCHCDGPG 8 Unmodified _SCHCDGPG_ 0 0 0 ENST00000592292.5_1_19:9529933-9546175:-|nuORF;ENST00000588221.5_1_19:9545477-9546142:-|nuORF ENST00000592292.5_1_19:9529933-9546175:-|nuORF ENST00000592292.5_1_19:9529933-9546175:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7089538574219 2 388.128531 774.242508 NaN NaN NaN NaN NaN NaN NaN 26.668 1 26.668 26.168 27.168 0 0 0 0 0.21486 1 4677 4677 0.79363 0 1 40124 11634 26825 26841 39400 39400 -0.15364330839281592 SCHCDGPG 8 Unmodified _SCHCDGPG_ 0 0 0 ENST00000592292.5_1_19:9529933-9546175:-|nuORF;ENST00000588221.5_1_19:9545477-9546142:-|nuORF ENST00000592292.5_1_19:9529933-9546175:-|nuORF ENST00000592292.5_1_19:9529933-9546175:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7229309082031 2 388.128531 774.242508 NaN NaN NaN NaN NaN NaN NaN 16.126 1 14.91 14.41 15.41 -1.2159 0 0 0 0.21486 1 2523 2523 0.79363 0 1 40125 11634 26825 26841 39401 39401 -0.15364330839281592 SCHHPPDH 8 Unmodified _SCHHPPDH_ 0 0 0 REV__nc|ENSG00000188107|Q5T1H1|EYS REV__nc|ENSG00000188107|Q5T1H1|EYS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24969482421875 2 465.187768 928.360984 NaN NaN NaN NaN NaN NaN NaN 72.577 1 69.266 68.766 69.766 -3.3107 0 0 0 0.2343 1 14144 14144 0.12286 0 1 + 40126 24215 26826 26842 39402 39402 -0.10606215539269215 SCHSAEPV 8 Unmodified _SCHSAEPV_ 0 0 0 ENST00000402966.1_1_22:42093436-42094048:+|nuORF ENST00000402966.1_1_22:42093436-42094048:+|nuORF ENST00000402966.1_1_22:42093436-42094048:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.1720275878906 2 415.179078 828.343602 NaN NaN NaN NaN NaN NaN NaN 89.273 1 89.273 88.773 89.773 0 0 0 0 0.23366 1 17433 17433 0.62683 0.56284 1 40127 9522 26827 26843 39403 39403 -0.07743555864931295 SCLINSFIF 9 Unmodified _SCLINSFIF_ 0 0 0 ENST00000373840.8_1_9:123943038-123943272:-|nuORF ENST00000373840.8_1_9:123943038-123943272:-|nuORF ENST00000373840.8_1_9:123943038-123943272:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2666015625 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 112.17 1 107.74 107.24 108.24 -4.4231 0 0 0 0.14843 1 22105 22105 30.637 5.2372 1 40128 9206 26828 26844 39404 39404 -0.0038040417741740384 SCLWLALN 8 Unmodified _SCLWLALN_ 0 0 0 REV__ENST00000572681.6_2_19:42778720-42790976:+|nuORF REV__ENST00000572681.6_2_19:42778720-42790976:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24029541015625 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 93.235 1 89.391 88.891 89.891 -3.844 0 0 0 0.22847 1 17873 17873 10.074 10.01 1 + 40129 23177 26829 26845 39405 39405 0.0008305747962822352 SCNNQCAC 8 Unmodified _SCNNQCAC_ 0 0 0 ENSG00000244486|ENST00000622235|SCARF2;nc|ENSG00000244486|Q96GP6|SCARF2 ENSG00000244486|ENST00000622235|SCARF2 ENSG00000244486|ENST00000622235|SCARF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 842.2545776367188 1 842.258969 841.251693 0.61642 0.00051919 -2.6074 -0.0021961 -1.991 -0.0016769 842.2561955405148 168.39 0.17351 163.6 163.52 163.69 -4.7898 5 4 2 0 0 0 8448 1 34037 34037 0 0 1 16570000 40130 7882 26830 26846 39406 39406 -0.1752830554527236 SCPPPGGG 8 Unmodified _SCPPPGGG_ 0 0 0 nc|ENSG00000068078|P22607-2|FGFR3;nc|ENSG00000068078|P22607-3|FGFR3;FGFR3|p.G697Afs*11|1|0.09|ENSG00000068078|chr4:1806600-1806600|C/-|frameshift_variant;nc|ENSG00000068078|P22607-4|FGFR3;ENSG00000068078|ENST00000440486|FGFR3 nc|ENSG00000068078|P22607-2|FGFR3 nc|ENSG00000068078|P22607-2|FGFR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.15167236328125 2 336.144507 670.27446 NaN NaN NaN NaN NaN NaN NaN 61.696 1 58.735 58.235 59.235 -2.9614 0 0 0 0.2396 1 11897 11897 0 0 1 40131 12231 26831 26847 39407 39407 -0.07386595093828419 SCPRQLKVP 9 Unmodified _SCPRQLKVP_ 0 0 0 ENSG00000155760|ENST00000286201|FZD7 ENSG00000155760|ENST00000286201|FZD7 ENSG00000155760|ENST00000286201|FZD7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.194580078125 3 343.195421 1026.56443 NaN NaN NaN NaN NaN NaN NaN 109.96 1 105.58 105.08 106.08 -4.3776 0 0 0 0.23508 1 21670 21670 2.4985 0 1 40132 5061 26832 26848 39408 39408 0.05221509182342743 SCPSVTVG 8 Unmodified _SCPSVTVG_ 0 0 0 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2085876464844 2 375.178546 748.34254 NaN NaN NaN NaN NaN NaN NaN 112.5 1 108.23 107.73 108.73 -4.2725 0 0 0 0.21486 1 21663 21663 5.2307 0 1 40133 7943 26833 26849 39409 39409 -0.04169770233818326 SCQPCCDHPG 10 Unmodified _SCQPCCDHPG_ 0 0 0 REV__KCP|p.S1006Afs*19|1|0.32|ENSG00000135253|chr7:128884051-128884051|G/-|frameshift_variant REV__KCP|p.S1006Afs*19|1|0.32|ENSG00000135253|chr7:128884051-128884051|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.67822265625 2 523.678062 1045.34157 NaN NaN NaN NaN NaN NaN NaN 174.62 1 169.83 169.33 170.33 -4.7898 0 0 0 0.22588 1 35680 35680 3.2813 0 1 + 40134 16253 26834 26850 39410 39410 -0.1792867593671872 SCRMRMAT 8 Unmodified _SCRMRMAT_ 0 0 0 REV__ENST00000530826.1_1_1:77876669-77883350:+|nuORF REV__ENST00000530826.1_1_1:77876669-77883350:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7235412597656 2 478.217157 954.419761 0.73528 0.00035162 3.7501 0.0017933 4.4853 0.002145 478.21806596607996 104.65 1.2416 100.6 100.02 101.26 -4.0543 45 34 2 0 0 0 0.40222 2 20208 20163;20208 32.305 7.6316 1 1443700 + 40135 22760 26835 26851 39411;39412 39412 -0.05927198560789293 SCSCCCCWC 9 Unmodified _SCSCCCCWC_ 0 0 0 REV__ENSG00000171700|ENST00000395042|RGS19 REV__ENSG00000171700|ENST00000395042|RGS19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.00469970703125 3 333.076957 996.209041 NaN NaN NaN NaN NaN NaN NaN 6.1352 1 5.509 5.009 6.009 -0.62626 0 0 0 0.23508 1 420 420 0 0 1 + 40136 18241 26836 26852 39413 39413 -0.2892148326102415 SCSSATVTPRG 11 Unmodified _SCSSATVTPRG_ 0 0 0 REV__ENSG00000129988|ENST00000217407|LBP REV__ENSG00000129988|ENST00000217407|LBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2789306640625 2 533.253305 1064.49206 0.15346 8.1832E-05 0.10347 5.5175E-05 0.25693 0.00013701 533.7546450105893 25.137 0.34412 25.137 24.98 25.324 0 15 9 2 0 0 0 0.60781 1 4329 4329 5.4027 4.9944 1 970550 + 40137 15978 26837 26853 39414 39414 -0.037608696818551834 SCSSPTRSLNK 11 Unmodified _SCSSPTRSLNK_ 0 0 0 REV__ENSG00000137812|ENST00000399668|KNL1 REV__ENSG00000137812|ENST00000399668|KNL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2522583007812 2 590.292962 1178.57137 NaN NaN NaN NaN NaN NaN NaN 159.9 1 154.64 154.14 155.14 -5.2526 0 0 0 0.19759 1 31027 31027 19.362 2.249 1 + 40138 16412 26838 26854 39415 39415 -0.010772227277584534 SCSYDFTVR 9 Unmodified _SCSYDFTVR_ 0 0 0 ENSG00000112357|ENST00000318471|PEX7 ENSG00000112357|ENST00000318471|PEX7 ENSG00000112357|ENST00000318471|PEX7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2013854980469 3 359.827175 1076.45969 0.14254 5.1289E-05 -2.9828 -0.0010733 -2.8402 -0.001022 359.82727443499067 83.912 0.7112 80.002 79.642 80.353 -3.9093 45 16 4 0 0 0 0.74567 1 15963 15963 4.1895 0.59301 1 1722600 40139 2691 26839 26855 39416 39416 -0.0754765708488776 SCTMLDDE 8 Unmodified _SCTMLDDE_ 0 0 0 REV__ENSG00000232434|ENST00000436881|AJM1 REV__ENSG00000232434|ENST00000436881|AJM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.10455322265625 3 305.114104 912.320484 NaN NaN NaN NaN NaN NaN NaN 75.357 1 75.357 74.857 75.857 0 0 0 0 0.21486 1 14634 14634 0 0 1 + 40140 19753 26840 26856 39417 39417 -0.1391836276458207 SCYCDSCD 8 Unmodified _SCYCDSCD_ 0 0 0 REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 448.582275390625 2 448.116971 894.21939 NaN NaN NaN NaN NaN NaN NaN 140.35 1 135.7 135.2 136.2 -4.6439 0 0 0 0.21486 1 27711 27711 0 0 1 + 40141 13416 26841 26857 39418 39418 -0.23195137738935045 SCYCDSCD 8 Unmodified _SCYCDSCD_ 0 0 0 REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 448.349609375 2 448.116971 894.21939 NaN NaN NaN NaN NaN NaN NaN 145.04 1 140.37 139.87 140.87 -4.6694 0 0 0 0.21486 1 28744 28744 0 0 1 + 40142 13416 26841 26857 39419 39419 -0.23195137738935045 SCYCDSCD 8 Unmodified _SCYCDSCD_ 0 0 0 REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 448.3505859375 2 448.116971 894.21939 NaN NaN NaN NaN NaN NaN NaN 154.27 1 149 148.5 149.5 -5.2669 0 0 0 0.21486 1 29911 29911 0 0 1 + 40143 13416 26841 26857 39420 39420 -0.23195137738935045 SCYCDSCD 8 Unmodified _SCYCDSCD_ 0 0 0 REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 448.3501892089844 2 448.116971 894.21939 NaN NaN NaN NaN NaN NaN NaN 136.99 1 132.15 131.65 132.65 -4.84 0 0 0 0.21486 1 26388 26388 0 0 1 + 40144 13416 26841 26857 39421 39421 -0.23195137738935045 SDAEMNHRSM 10 Unmodified _SDAEMNHRSM_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.29833984375 3 393.16234 1176.46519 -0.066184 -2.6021E-05 -1.6117 -0.00063367 -1.6779 -0.00065969 393.1634288098575 132.79 0.69812 132.79 132.44 133.14 0 53 19 5 0 0 0 0.91149 1 26191 26191 1.7423 0 1 2428600 40145 12458 26842 26858 39422 39422 -0.11598301564731628 SDAGDDAC 8 Unmodified _SDAGDDAC_ 0 0 0 REV__ENST00000477184.5_1_7:102123232-102123718:-|nuORF REV__ENST00000477184.5_1_7:102123232-102123718:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 377.12005615234375 2 377.121425 752.228298 NaN NaN NaN NaN NaN NaN NaN 179.54 1 174.63 174.13 175.13 -4.9114 0 0 0 0.21486 1 35824 35824 0.69038 0 1 + 40146 21764 26843 26859 39423 39423 -0.15772704786593295 SDAGDTGF 8 Unmodified _SDAGDTGF_ 0 0 0 REV__nc|ENSG00000120318|Q8WWN8-2|ARAP3 REV__nc|ENSG00000120318|Q8WWN8-2|ARAP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 385.1984558105469 2 385.153583 768.292613 NaN NaN NaN NaN NaN NaN NaN 16.973 1 15.488 14.988 15.988 -1.4841 0 0 0 0.23899 1 2435 2435 1.3295 0 1 + 40147 15617 26844 26860 39424 39424 -0.10080181638124941 SDAVEIIPAE 10 Unmodified _SDAVEIIPAE_ 0 0 0 ENSG00000170948|ENST00000595891|MBD3L1 ENSG00000170948|ENST00000595891|MBD3L1 ENSG00000170948|ENST00000595891|MBD3L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2684936523438 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 108.41 1 104.09 103.59 104.59 -4.32 0 0 0 2.8426 1 21361 21361 1.9275 0 1 40148 6114 26845 26861 39425 39425 -0.001302772387589357 SDAVVIGVF 9 Unmodified _SDAVVIGVF_ 0 0 0 tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.750244140625 2 453.750193 905.485833 -0.048881 -2.218E-05 0.37322 0.00016935 0.32434 0.00014717 453.7503111255708 115.98 0.76148 111.49 111.1 111.87 -4.486 50 21 3 0 0 0 0.11447 2 22857 22857;22906 50.855 6.0504 1 3394400 40149 26385 26846 26862 39426;39427 39426 0.029309801489148413 SDAVVIGVF 9 Unmodified _SDAVVIGVF_ 0 0 0 tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.750244140625 2 453.750193 905.485833 0.22761 0.00010328 -0.042883 -1.9458E-05 0.18472 8.3819E-05 453.7501075435626 116.1 0.78398 111.51 111.08 111.87 -4.5815 49 22 3 0 0 0 0.11447 2 22266 22266;22312 50.855 2.5092 1 3483500 40150 26385 26846 26862 39428;39429 39428 0.029309801489148413 SDAVVIGVF 9 Unmodified _SDAVVIGVF_ 0 0 0 tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75018310546875 2 453.750193 905.485833 0.46119 0.00020926 -0.11472 -5.2056E-05 0.34646 0.00015721 453.7500270966085 115.88 0.77558 111.52 111.11 111.88 -4.3585 48 21 3 0 0 0 0.25702 1 22349 22349 34.102 5.6156 1 3379200 40151 26385 26846 26862 39430 39430 0.029309801489148413 SDAVVVAVF 9 Unmodified _SDAVVVAVF_ 0 0 0 nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;TRIM37|p.P935Rfs*15|1|0.29|ENSG00000108395|chr17:59001606-59001606|G/-|frameshift_variant;ENSG00000108395|ENST00000262294|TRIM37 nc|ENSG00000108395|O94972-2|TRIM37 nc|ENSG00000108395|O94972-2|TRIM37 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75042724609375 2 453.750193 905.485833 0.22761 0.00010328 -0.042883 -1.9458E-05 0.18472 8.3819E-05 453.7501075435626 116.1 0.78398 111.51 111.08 111.87 -4.5815 49 22 3 0 0 0 0.46541 1 22228 22228 21.747 0 1 3483500 40152 2471 26847 26863 39431 39431 0.029309801489034726 SDCAFEPDY 9 Unmodified _SDCAFEPDY_ 0 0 0 nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;TANC2|p.L657Sfs*6|1|0.02|ENSG00000170921|chr17:63354997-63354998|-/T|frameshift_variant;nc|ENSG00000170921|Q9HCD6-3|TANC2;nc|ENSG00000170921|Q9HCD6-4|TANC2;TANC2|p.P1519Lfs*33|3|0.27|ENSG00000170921|chr17:63420533-63420533|C/-|frameshift_variant nc|ENSG00000170921|Q9HCD6|TANC2 nc|ENSG00000170921|Q9HCD6|TANC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6915893554688 2 523.692215 1045.36988 0.42895 0.00022464 -2.2858 -0.001197 -1.8568 -0.00097239 523.691038364718 76.46 0.42171 76.46 76.273 76.694 0 16 11 2 0 0 0 0.55728 1 14868 14868 2.6312 0 1 1354500 40153 6112 26848 26864 39432 39432 -0.15099331484111644 SDCAFEPDY 9 Unmodified _SDCAFEPDY_ 0 0 0 nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;TANC2|p.L657Sfs*6|1|0.02|ENSG00000170921|chr17:63354997-63354998|-/T|frameshift_variant;nc|ENSG00000170921|Q9HCD6-3|TANC2;nc|ENSG00000170921|Q9HCD6-4|TANC2;TANC2|p.P1519Lfs*33|3|0.27|ENSG00000170921|chr17:63420533-63420533|C/-|frameshift_variant nc|ENSG00000170921|Q9HCD6|TANC2 nc|ENSG00000170921|Q9HCD6|TANC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6904907226562 2 523.692215 1045.36988 NaN NaN NaN NaN NaN NaN NaN 111.72 1 111.72 111.22 112.22 0 0 0 0 0.19684 1 21978 21978 0.40827 0 1 40154 6112 26848 26864 39433 39433 -0.15099331484111644 SDCCLCCCCC 10 Unmodified _SDCCLCCCCC_ 0 0 0 nc|ENSG00000138650|Q9P2E7-2|PCDH10;ENSG00000138650|ENST00000264360|PCDH10 nc|ENSG00000138650|Q9P2E7-2|PCDH10 nc|ENSG00000138650|Q9P2E7-2|PCDH10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 528.1178588867188 2 528.116222 1054.21789 NaN NaN NaN NaN NaN NaN NaN 165.66 1 165.66 165.16 166.16 0 0 0 0 0.22588 1 33645 33645 0 0 1 40155 4194 26849 26865 39434 39434 -0.30704877686866894 SDCLKRPLY 9 Unmodified _SDCLKRPLY_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7901000976562 2 547.786784 1093.55902 0.73486 0.00040255 -3.9394 -0.002158 -3.2046 -0.0017554 547.7840518362168 109.27 0.59643 105.09 104.74 105.33 -4.1826 24 16 2 0 0 0 0.44932 1 20964 20964 22.736 8.3309 1 905490 + 40156 18377 26850 26866 39435 39435 0.015977855998926316 SDCSEYSDYR 10 Unmodified _SDCSEYSDYR_ 0 0 0 REV__ENSG00000011243|ENST00000397410|AKAP8L REV__ENSG00000011243|ENST00000397410|AKAP8L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 408.5231628417969 3 408.820637 1223.44008 0.29165 0.00011923 0.25533 0.00010438 0.54698 0.00022362 408.82060732934787 48.769 0.53436 48.769 48.556 49.09 0 30 14 3 0 0 0 1.1335 1 9182 9182 1.9064 1.905 1 2020700 + 40157 13932 26851 26867 39436 39436 -0.16270077886315448 SDCSEYSDYR 10 Unmodified _SDCSEYSDYR_ 0 0 0 REV__ENSG00000011243|ENST00000397410|AKAP8L REV__ENSG00000011243|ENST00000397410|AKAP8L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 408.820637 1223.44008 -0.35758 -0.00014619 0.79319 0.00032427 0.43561 0.00017809 408.82091052576345 51.987 0.54601 49.105 48.798 49.344 -2.8824 0.099206 0.000185 NaN 1.9064 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1772400 + 40158 13932 26851 26867 -0.16270077886315448 SDCSEYSDYR 10 Unmodified _SDCSEYSDYR_ 0 0 0 REV__ENSG00000011243|ENST00000397410|AKAP8L REV__ENSG00000011243|ENST00000397410|AKAP8L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 408.820637 1223.44008 0.026851 1.0977E-05 0.39308 0.0001607 0.41993 0.00017168 408.82079063981433 52.147 0.62822 49.06 48.705 49.334 -3.0876 0.053874 -0.00030572 NaN 1.9064 34 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3446500 + 40159 13932 26851 26867 -0.16270077886315448 SDCSEYSDYR 10 Unmodified _SDCSEYSDYR_ 0 0 0 REV__ENSG00000011243|ENST00000397410|AKAP8L REV__ENSG00000011243|ENST00000397410|AKAP8L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 408.820637 1223.44008 -0.49631 -0.0002029 1.1477 0.00046919 0.65134 0.00026628 408.82101154102105 52.141 0.58775 49.089 48.76 49.348 -3.0517 0.083679 0.00061975 NaN 1.9064 38 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1331700 + 40160 13932 26851 26867 -0.16270077886315448 SDDDDDDDSMD 11 Unmodified _SDDDDDDDSMD_ 0 0 0 REV__ENSG00000175895|ENST00000315367|PLEKHF2 REV__ENSG00000175895|ENST00000315367|PLEKHF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7674560546875 2 622.672602 1243.33065 NaN NaN NaN NaN NaN NaN NaN 66.783 1 66.783 66.283 67.283 0 0 0 0 0.22632 1 12903 12903 0 0 1 + 40161 18492 26852 26868 39437 39437 -0.2812817308697504 SDDDDDDDSMD 11 Unmodified _SDDDDDDDSMD_ 0 0 0 REV__ENSG00000175895|ENST00000315367|PLEKHF2 REV__ENSG00000175895|ENST00000315367|PLEKHF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7628784179688 2 622.672602 1243.33065 NaN NaN NaN NaN NaN NaN NaN 142.05 1 137.4 136.9 137.9 -4.6493 0 0 0 0.22632 1 28075 28075 0.026206 0.018923 1 + 40162 18492 26852 26868 39438 39438 -0.2812817308697504 SDDDDDDDSMD 11 Unmodified _SDDDDDDDSMD_ 0 0 0 REV__ENSG00000175895|ENST00000315367|PLEKHF2 REV__ENSG00000175895|ENST00000315367|PLEKHF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.76318359375 2 622.672602 1243.33065 NaN NaN NaN NaN NaN NaN NaN 140.28 1 135.29 134.79 135.79 -4.9877 0 0 0 0.22632 1 26999 26999 0 0 1 + 40163 18492 26852 26868 39439 39439 -0.2812817308697504 SDDDDDDDSMD 11 Unmodified _SDDDDDDDSMD_ 0 0 0 REV__ENSG00000175895|ENST00000315367|PLEKHF2 REV__ENSG00000175895|ENST00000315367|PLEKHF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7608642578125 2 622.672602 1243.33065 NaN NaN NaN NaN NaN NaN NaN 172.67 1 167.77 167.27 168.27 -4.8977 0 0 0 0.22632 1 34255 34255 0 0 1 + 40164 18492 26852 26868 39440 39440 -0.2812817308697504 SDDDDDDDSMD 11 Unmodified _SDDDDDDDSMD_ 0 0 0 REV__ENSG00000175895|ENST00000315367|PLEKHF2 REV__ENSG00000175895|ENST00000315367|PLEKHF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7608642578125 2 622.672602 1243.33065 NaN NaN NaN NaN NaN NaN NaN 172.69 1 167.79 167.29 168.29 -4.8977 0 0 0 0.23698 1 34259 34259 0 0 1 + 40165 18492 26852 26868 39441 39441 -0.2812817308697504 SDDDDDDDSMD 11 Unmodified _SDDDDDDDSMD_ 0 0 0 REV__ENSG00000175895|ENST00000315367|PLEKHF2 REV__ENSG00000175895|ENST00000315367|PLEKHF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7745971679688 2 622.672602 1243.33065 NaN NaN NaN NaN NaN NaN NaN 138.67 1 133.82 133.32 134.32 -4.8492 0 0 0 0.22632 1 26726 26726 0 0 1 + 40166 18492 26852 26868 39442 39442 -0.2812817308697504 SDDDDDDDSMD 11 Unmodified _SDDDDDDDSMD_ 0 0 0 REV__ENSG00000175895|ENST00000315367|PLEKHF2 REV__ENSG00000175895|ENST00000315367|PLEKHF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7579345703125 2 622.672602 1243.33065 NaN NaN NaN NaN NaN NaN NaN 140.62 1 135.75 135.25 136.25 -4.8678 0 0 0 0.22632 1 27116 27116 0 0 1 + 40167 18492 26852 26868 39443 39443 -0.2812817308697504 SDDDNDDDNG 10 Unmodified _SDDDNDDDNG_ 0 0 0 ENSG00000147174|ENST00000373696|GCNA ENSG00000147174|ENST00000373696|GCNA ENSG00000147174|ENST00000373696|GCNA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.1632690429688 2 541.163061 1080.31157 NaN NaN NaN NaN NaN NaN NaN 5.7326 1 4.6926 4.1926 5.1926 -1.04 0 0 0 0.22588 1 320 320 0 0 1 40168 4690 26853 26869 39444 39444 -0.2253734159569376 SDDEEDSG 8 Unmodified _SDDEEDSG_ 0 0 0 REV__ENSG00000096384|ENST00000371646|HSP90AB1;REV__nc|ENSG00000205940|Q58FF8|HSP90AB2P REV__ENSG00000096384|ENST00000371646|HSP90AB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 427.1383361816406 2 427.138327 852.262101 NaN NaN NaN NaN NaN NaN NaN 154.33 1 154.33 153.83 154.83 0 0 0 0 0.21486 1 30931 30931 0 0 1 + 40169 14621;24245 26854 26870 39445 39445 -0.16994004813830088 SDDFDYEELK 10 Unmodified _SDDFDYEELK_ 0 0 0 ENSG00000141034|ENST00000268719|GID4 ENSG00000141034|ENST00000268719|GID4 ENSG00000141034|ENST00000268719|GID4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.778076171875 2 630.766965 1259.51938 NaN NaN NaN NaN NaN NaN NaN 156.02 1 150.74 150.24 151.24 -5.2854 0 0 0 0.22588 1 30263 30263 9.3831 1.2276 1 40170 4344 26855 26871 39446 39446 -0.1000010766053947 SDDFYEKEEEC 11 Unmodified _SDDFYEKEEEC_ 0 0 0 REV__SRFBP1|p.Y270Lfs*8|1|0.12|ENSG00000151304|chr5:122020539-122020540|-/T|frameshift_variant REV__SRFBP1|p.Y270Lfs*8|1|0.12|ENSG00000151304|chr5:122020539-122020540|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.250244140625 3 465.174857 1392.50274 NaN NaN NaN NaN NaN NaN NaN 76.292 1 76.292 75.792 76.792 0 0 0 0 0.22632 1 14826 14826 0.026206 0 1 + 40171 17058 26856 26872 39447 39447 -0.17780976608742094 SDDHQFWY 8 Unmodified _SDDHQFWY_ 0 0 0 REV__ENSG00000133962|ENST00000256343|CATSPERB REV__ENSG00000133962|ENST00000256343|CATSPERB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 366.46881103515625 3 366.482284 1096.42502 0.13339 4.8883E-05 -2.4104 -0.00088338 -2.2771 -0.0008345 366.4812007381349 103.82 0.14115 103.82 103.72 103.86 0 5 3 2 0 0 0 8448 1 20392 20392 0.25148 0.2222 1 875980 + 40172 16185 26857 26873 39448 39448 -0.11933156901318398 SDDSKLEY 8 Unmodified _SDDSKLEY_ 0 0 0 ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72283935546875 2 478.714005 955.413456 NaN NaN NaN NaN NaN NaN NaN 39.06 1 36.655 36.155 37.155 -2.4049 0 0 0 0.017594 1 6963 6963 63.961 20.188 1 40173 31 26858 26874 39449 39449 -0.06603398715321873 SDEDQHDA 8 Unmodified _SDEDQHDA_ 0 0 0 ENST00000293880.9_1_11:57097565-57097900:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1 ENST00000293880.9_1_11:57097565-57097900:-|nuORF ENST00000293880.9_1_11:57097565-57097900:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.11370849609375 3 306.114149 915.320618 NaN NaN NaN NaN NaN NaN NaN 178.87 1 178.87 178.37 179.37 0 0 0 0 0.21486 1 37051 37051 0 0 1 40174 4770 26859 26875 39450 39450 -0.14042903448705601 SDEEVEHLS 9 Unmodified _SDEEVEHLS_ 0 0 0 SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant;nc|ENSG00000140386|Q9BY12-3|SCAPER;ENST00000303521.10_1_15:76673691-77134263:-|nuORF;RCN2-SCAPER|1|fusion;ENSG00000140386|ENST00000563290|SCAPER SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2721557617188 2 522.727643 1043.44073 -0.23168 -0.00012111 0.15092 7.889E-05 -0.080762 -4.2217E-05 522.7277414949568 46.234 0.3486 43.393 43.137 43.486 -2.8409 14 9 2 0 0 0 0.87888 1 8712 8712 2.0598 0 1 695890 40175 4295 26860 26876 39451 39451 -0.0792491517495364 SDELSQRCRRK 11 Unmodified _SDELSQRCRRK_ 0 0 0 REV__ENSG00000169683|ENST00000306688|LRRC45 REV__ENSG00000169683|ENST00000306688|LRRC45 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2294006347656 3 459.90537 1376.69428 NaN NaN NaN NaN NaN NaN NaN 15.178 1 13.968 13.468 14.468 -1.2106 0 0 0 0.23698 1 2072 2072 0.45452 0.29519 1 + 40176 18115 26861 26877 39452 39452 0.021000337235136612 SDEPHNLE 8 Unmodified _SDEPHNLE_ 0 0 0 REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70 REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1382751464844 3 314.138406 939.393389 NaN NaN NaN NaN NaN NaN NaN 157.69 1 152.41 151.91 152.91 -5.2854 0 0 0 0.21486 1 30605 30605 0.40072 0 1 + 40177 17241 26862 26878 39453 39453 -0.0787314965529049 SDFLEKLRA 9 Unmodified _SDFLEKLRA_ 0 0 0 REV__nc|ENSG00000100503|Q8N4C6-6|NIN REV__nc|ENSG00000100503|Q8N4C6-6|NIN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201904296875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 72.891 1 72.891 72.391 73.391 0 0 0 0 0.23508 1 14142 14142 4.897 2.1618 1 + 40178 14717 26863 26879 39454 39454 0.046171279889904326 SDFLIPQSH 9 Unmodified _SDFLIPQSH_ 0 0 0 ENST00000361605.3_1_1:3807568-3816826:-|nuORF ENST00000361605.3_1_1:3807568-3816826:-|nuORF ENST00000361605.3_1_1:3807568-3816826:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2611694335938 2 522.261456 1042.50836 -0.17771 -9.2812E-05 0.48305 0.00025228 0.30534 0.00015946 522.2614970887628 97.261 0.45197 93.163 92.907 93.359 -4.0978 30 12 3 0 0 0 0.039785 2 19076 19042;19076 75.761 23.492 1 3652900 40179 9028 26864 26880 39455;39456 39456 -0.011194204534831442 SDFLIPQSH 9 Unmodified _SDFLIPQSH_ 0 0 0 ENST00000361605.3_1_1:3807568-3816826:-|nuORF ENST00000361605.3_1_1:3807568-3816826:-|nuORF ENST00000361605.3_1_1:3807568-3816826:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.260986328125 2 522.261456 1042.50836 -0.53716 -0.00028054 0.20404 0.00010656 -0.33312 -0.00017397 522.2617470525577 97.479 0.40904 93.244 92.949 93.358 -4.2348 34 11 4 0 0 0 0.63326 2 18583 18583;18605 10.8 1.2548 1 3320100 40180 9028 26864 26880 39457;39458 39457 -0.011194204534831442 SDFLIPQSH 9 Unmodified _SDFLIPQSH_ 0 0 0 ENST00000361605.3_1_1:3807568-3816826:-|nuORF ENST00000361605.3_1_1:3807568-3816826:-|nuORF ENST00000361605.3_1_1:3807568-3816826:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2611694335938 2 522.261456 1042.50836 0.029713 1.5518E-05 0.11659 6.0888E-05 0.1463 7.6406E-05 522.2613958787681 97.094 0.44071 93.175 92.887 93.328 -3.9194 28 12 3 0 0 0 0.18865 1 18618 18618 38.615 13.215 1 3100700 40181 9028 26864 26880 39459 39459 -0.011194204534831442 SDFLIPQSH 9 Unmodified _SDFLIPQSH_ 0 0 0 ENST00000361605.3_1_1:3807568-3816826:-|nuORF ENST00000361605.3_1_1:3807568-3816826:-|nuORF ENST00000361605.3_1_1:3807568-3816826:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.261456 1042.50836 -0.53716 -0.00028054 0.20404 0.00010656 -0.33312 -0.00017397 522.2617470525577 97.479 0.40904 93.244 92.949 93.358 -4.2348 0.089388 -1.7813E-05 NaN 75.761 34 11 4 NaN NaN NaN NaN 0 NaN NaN 0 3320100 40182 9028 26864 26880 -0.011194204534831442 SDFYILSSYKS 11 Unmodified _SDFYILSSYKS_ 0 0 0 REV__nc|ENSG00000123485|Q8NCD3-3|HJURP REV__nc|ENSG00000123485|Q8NCD3-3|HJURP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.215576171875 3 437.215204 1308.62378 0.029681 1.2977E-05 0.22197 9.705E-05 0.25165 0.00011003 437.2153627025327 12.888 0.51832 12.888 12.649 13.167 0 36 14 4 0 0 0 0.80907 1 1860 1860 2.4348 0 1 5871100 + 40183 15733 26865 26881 39460 39460 -0.018183611131462385 SDGSPMREWD 10 Unmodified _SDGSPMREWD_ 0 0 0 REV__ENST00000600534.1_1_19:59070689-59083247:+|nuORF REV__ENST00000600534.1_1_19:59070689-59083247:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2623291015625 2 590.240395 1178.46624 0.59374 0.00035045 1.0852 0.00064055 1.679 0.000991 590.2407568217975 159.61 0.53229 154.33 153.9 154.43 -5.2748 21 14 2 0 0 0 0.52989 1 30946 30946 1.9064 1.7665 1 1641000 + 40184 23362 26866 26882 39461 39461 -0.11585763924176717 SDGWVGVIPD 10 Unmodified _SDGWVGVIPD_ 0 0 0 REV__ENST00000458060.1_1_6:29974304-29974643:-|nuORF REV__ENST00000458060.1_1_6:29974304-29974643:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.4997253417969 3 348.838068 1043.49238 0.75512 0.00026341 -0.84561 -0.00029498 -0.090496 -3.1568E-05 348.8377261657443 24.678 0.30956 23.03 22.926 23.235 -1.6482 14 8 2 0 0 0 1.127 1 4345 4345 0.84494 0.72208 1 502830 + 40185 21862 26867 26883 39462 39462 -0.027631266903881624 SDGWVGVIPD 10 Unmodified _SDGWVGVIPD_ 0 0 0 REV__ENST00000458060.1_1_6:29974304-29974643:-|nuORF REV__ENST00000458060.1_1_6:29974304-29974643:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 348.838068 1043.49238 0.026939 9.3974E-06 -0.2869 -0.00010008 -0.25996 -9.0683E-05 348.8380267465721 24.578 0.31281 23.044 22.85 23.163 -1.5342 0.0070588 0.00042022 NaN 0.84494 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 441900 + 40186 21862 26867 26883 -0.027631266903881624 SDHLKENN 8 Unmodified _SDHLKENN_ 0 0 0 ENSG00000175175|ENST00000308249|PPM1E;nc|ENSG00000175175|Q8WY54-3|PPM1E ENSG00000175175|ENST00000308249|PPM1E ENSG00000175175|ENST00000308249|PPM1E MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7251281738281 2 478.725238 955.435923 0.44814 0.00021454 -0.37871 -0.0001813 0.069434 3.324E-05 478.72505362028545 30.822 1.3641 28.705 27.634 28.998 -2.1167 57 38 2 0 0 0 0.69031 1 5475 5475 15.847 3.3156 1 893010 40187 6391 26868 26884 39463 39463 -0.04357754527052293 SDHLKENN 8 Unmodified _SDHLKENN_ 0 0 0 ENSG00000175175|ENST00000308249|PPM1E;nc|ENSG00000175175|Q8WY54-3|PPM1E ENSG00000175175|ENST00000308249|PPM1E ENSG00000175175|ENST00000308249|PPM1E MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72442626953125 2 478.725238 955.435923 NaN NaN NaN NaN NaN NaN NaN 30.301 1 28.408 27.908 28.908 -1.8928 0 0 0 0.21039 1 5188 5188 16.942 1.0951 1 40188 6391 26868 26884 39464 39464 -0.04357754527052293 SDHLKENN 8 Unmodified _SDHLKENN_ 0 0 0 ENSG00000175175|ENST00000308249|PPM1E;nc|ENSG00000175175|Q8WY54-3|PPM1E ENSG00000175175|ENST00000308249|PPM1E ENSG00000175175|ENST00000308249|PPM1E MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72705078125 2 478.725238 955.435923 NaN NaN NaN NaN NaN NaN NaN 30.438 1 28.364 27.864 28.864 -2.0743 0 0 0 0.20896 1 5212 5212 18.135 2.2878 1 40189 6391 26868 26884 39465 39465 -0.04357754527052293 SDHPAHLP 8 Unmodified _SDHPAHLP_ 0 0 0 CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2272033691406 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 100.17 1 100.17 99.668 100.67 0 0 0 0 0.23749 1 19651 19651 0.0082765 0 1 40190 464 26869 26885 39466 39466 -0.027245144849530334 SDHPAHLP 8 Unmodified _SDHPAHLP_ 0 0 0 CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2271423339844 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 121.07 1 121.07 120.57 121.57 0 0 0 0 0.23749 1 23861 23861 0.12286 0.058877 1 40191 464 26869 26885 39467 39467 -0.027245144849530334 SDHPAHLP 8 Unmodified _SDHPAHLP_ 0 0 0 CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21502685546875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 149.8 1 149.8 149.3 150.3 0 0 0 0 0.21486 1 29988 29988 5.7604 0 1 40192 464 26869 26885 39468 39468 -0.027245144849530334 SDHPAHLP 8 Unmodified _SDHPAHLP_ 0 0 0 CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.216064453125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 176.51 1 171.72 171.22 172.22 -4.7898 0 0 0 0.21486 1 36094 36094 0.79363 0 1 40193 464 26869 26885 39469 39469 -0.027245144849530334 SDHPAHLP 8 Unmodified _SDHPAHLP_ 0 0 0 CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22882080078125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 82.798 1 78.925 78.425 79.425 -3.8736 0 0 0 0.23366 1 15726 15726 0.0082765 0 1 40194 464 26869 26885 39470 39470 -0.027245144849530334 SDHPAHLP 8 Unmodified _SDHPAHLP_ 0 0 0 CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2281799316406 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 101.79 1 97.47 96.97 97.97 -4.3208 0 0 0 0.23366 1 19481 19481 0.12286 0 1 40195 464 26869 26885 39471 39471 -0.027245144849530334 SDHPAHLP 8 Unmodified _SDHPAHLP_ 0 0 0 CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2285461425781 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 122.16 1 117.63 117.13 118.13 -4.5305 0 0 0 0.23366 1 23517 23517 0.12286 0 1 40196 464 26869 26885 39472 39472 -0.027245144849530334 SDHPAHLP 8 Unmodified _SDHPAHLP_ 0 0 0 CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21533203125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 157.75 1 152.48 151.98 152.98 -5.2712 0 0 0 0.21486 1 30600 30600 5.7604 0 1 40197 464 26869 26885 39473 39473 -0.027245144849530334 SDHPAHLP 8 Unmodified _SDHPAHLP_ 0 0 0 CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2148742675781 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 158.54 1 153.27 152.77 153.77 -5.2712 0 0 0 0.21486 1 30761 30761 5.7604 0 1 40198 464 26869 26885 39474 39474 -0.027245144849530334 SDHPAHLP 8 Unmodified _SDHPAHLP_ 0 0 0 CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21478271484375 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 160.33 1 155.07 154.57 155.57 -5.2526 0 0 0 0.21486 1 31117 31117 5.7604 0 1 40199 464 26869 26885 39475 39475 -0.027245144849530334 SDICFGDSL 9 Unmodified _SDICFGDSL_ 0 0 0 REV__ENSG00000188997|ENST00000340067|KCTD21 REV__ENSG00000188997|ENST00000340067|KCTD21 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7265930175781 2 478.705125 955.395698 NaN NaN NaN NaN NaN NaN NaN 94.397 1 90.206 89.706 90.706 -4.1911 0 0 0 0.22251 1 18005 18005 16.942 0 1 + 40200 19183 26870 26886 39476 39476 -0.08378437241822212 SDIGVPGF 8 Unmodified _SDIGVPGF_ 0 0 0 REV__ENSG00000078177|ENST00000261435|N4BP2 REV__ENSG00000078177|ENST00000261435|N4BP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 396.2027282714844 2 396.200336 790.386119 NaN NaN NaN NaN NaN NaN NaN 53.212 1 53.212 52.712 53.712 0 0 0 0 0.22847 1 10129 10129 10.074 3.8681 1 + 40201 14375 26871 26887 39477 39477 -0.01745837465045952 SDIKRFFM 8 Unmodified _SDIKRFFM_ 0 0 0 SOS1|p.F991_E992insM|1|0.1|ENSG00000115904|chr2:38997029-38997030|-/CAT|inframe_insertion SOS1|p.F991_E992insM|1|0.1|ENSG00000115904|chr2:38997029-38997030|-/CAT|inframe_insertion SOS1|p.F991_E992insM|1|0.1|ENSG00000115904|chr2:38997029-38997030|-/CAT|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.271728515625 2 522.27077 1042.52699 NaN NaN NaN NaN NaN NaN NaN 164.38 1 159.31 158.81 159.81 -5.0648 0 0 0 0.21486 1 32050 32050 7.9102 0 1 40202 25709 26872 26888 39478 39478 0.007424179167401235 SDILNYSGNL 10 Unmodified _SDILNYSGNL_ 0 0 0 ENSG00000115514|ENST00000264255|TXNDC9 ENSG00000115514|ENST00000264255|TXNDC9 ENSG00000115514|ENST00000264255|TXNDC9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7935791015625 2 548.269478 1094.5244 0.16763 9.1904E-05 -0.76882 -0.00042152 -0.6012 -0.00032962 548.7728153696428 130.96 0.17923 126.32 126.17 126.35 -4.6359 7 4 2 0 0 0 0.75233 1 25806 25806 22.736 0 1 878910 40203 2861 26873 26889 39479 39479 -0.019077590072356543 SDKFKKYYK 9 Unmodified _SDKFKKYYK_ 0 0 0 REV__tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1 REV__tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 603.826904296875 2 603.829506 1205.64446 NaN NaN NaN NaN NaN NaN NaN 11.275 1 11.275 10.775 11.775 0 0 0 0 0.23508 1 1482 1482 0.6015 0 1 + 40204 25301 26874 26890 39480 39480 0.04986274057182527 SDKIEAYM 8 Unmodified _SDKIEAYM_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74298095703125 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 39.234 1 36.685 36.185 37.185 -2.5491 0 0 0 0.17145 1 7288 7288 34.402 10.381 1 40205 1877 26875 26891 39481 39481 -0.047415603451327115 SDKIEAYM 8 Unmodified _SDKIEAYM_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7232971191406 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 39.241 1 36.799 36.299 37.299 -2.4419 0 0 0 0.20135 1 7005 7005 24.021 0.87215 1 40206 1877 26875 26891 39482 39482 -0.047415603451327115 SDKKYSILI 9 Unmodified _SDKKYSILI_ 0 0 0 tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1 tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1 tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 534.2974243164062 2 533.810782 1065.60701 0.21871 0.00011675 -0.20026 -0.0001069 0.018451 9.8494E-06 533.8107162095913 153.7 0.85037 148.93 148.55 149.4 -4.7684 40 23 3 0 0 0 0.39168 1 30500 30500 1.2148 0 1 3935400 40207 26202 26876 26892 39483 39483 0.07683182791583931 SDKRGMKVTE 10 Unmodified _SDKRGMKVTE_ 0 0 0 REV__nc|ENSG00000137824|Q96TC7-2|RMDN3 REV__nc|ENSG00000137824|Q96TC7-2|RMDN3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 383.89703369140625 3 384.201012 1149.58121 NaN NaN NaN NaN NaN NaN NaN 85.675 1 82.011 81.511 82.511 -3.6641 0 0 0 2.8426 1 16749 16749 0.69767 0 1 + 40208 16416 26877 26893 39484 39484 0.012399652776366565 SDKYFDEHY 9 Unmodified _SDKYFDEHY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2843017578125 2 602.251286 1202.48802 0.49055 0.00029543 -0.47323 -0.000285 0.017324 1.0434E-05 602.2506402496043 75.287 0.30771 71.564 71.308 71.616 -3.7227 10 8 2 0 0 0 2.9164E-05 2 14243 14239;14243 132.38 105.5 1 1715000 40209 3285 26878 26894 39485;39486 39486 -0.10512635903933187 SDKYFDEHY 9 Unmodified _SDKYFDEHY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2857666015625 2 602.251286 1202.48802 0.37059 0.00022319 -0.70265 -0.00042317 -0.33206 -0.00019998 602.2508141826611 75.088 0.27528 71.494 71.372 71.647 -3.594 12 7 2 0 0 0 0.10782 1 14297 14297 59.368 49.352 1 1388500 40210 3285 26878 26894 39487 39487 -0.10512635903933187 SDLNRVIY 8 Unmodified _SDLNRVIY_ 0 0 0 REV__ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant REV__ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2659912109375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 104.24 1 104.24 103.74 104.74 0 0 0 0 0.22676 1 20486 20486 1.7423 0 1 + 40211 12883 26879 26895 39488 39488 0.02332883409144415 SDLRVSPF 8 Unmodified _SDLRVSPF_ 0 0 0 REV__ENST00000539351.5_1_12:132569846-132570025:+|nuORF REV__ENST00000539351.5_1_12:132569846-132570025:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2358093261719 2 460.745442 919.476331 0.14777 6.8086E-05 0.98639 0.00045448 1.1342 0.00052256 460.74560403913114 87.528 0.35831 83.778 83.623 83.981 -3.7501 11 9 2 0 0 0 0.9383 1 16759 16759 13.906 9.9617 1 883890 + 40212 22847 26880 26896 39489 39489 0.013372118633924401 SDLVIIHR 8 Unmodified _SDLVIIHR_ 0 0 0 REV__VPS13A|p.N1099H|1|0.24|ENSG00000197969|chr9:77283606-77283606|A/C|missense_variant REV__VPS13A|p.N1099H|1|0.24|ENSG00000197969|chr9:77283606-77283606|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.1911315917969 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 108.51 1 104.19 103.69 104.69 -4.32 0 0 0 0.21486 1 21382 21382 1.6526 0 1 + 40213 25536 26881 26897 39490 39490 0.07245180025722675 SDMNRQHEY 9 Unmodified _SDMNRQHEY_ 0 0 0 REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1 REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2588500976562 2 590.246012 1178.47747 0.38039 0.00022452 0.60616 0.00035778 0.98655 0.00058231 590.2463293399499 41.037 0.51835 38.497 38.313 38.831 -2.5398 21 14 2 0 0 0 0.5428 1 7348 7348 4.897 4.2702 1 1475700 + 40214 16785 26882 26898 39491 39491 -0.1046294183001919 SDNLEVYLL 9 Unmodified _SDNLEVYLL_ 0 0 0 REV__ENSG00000172985|ENST00000309415|SH3RF3 REV__ENSG00000172985|ENST00000309415|SH3RF3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2791748046875 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 22.703 1 21.15 20.65 21.65 -1.5532 0 0 0 0.18966 1 3891 3891 0.12781 0.0049496 1 + 40215 18320 26883 26899 39492 39492 0.009303131409069465 SDNLEVYLL 9 Unmodified _SDNLEVYLL_ 0 0 0 REV__ENSG00000172985|ENST00000309415|SH3RF3 REV__ENSG00000172985|ENST00000309415|SH3RF3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2791748046875 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 22.719 1 21.166 20.666 21.666 -1.5532 0 0 0 0.21065 1 3893 3893 20.454 4.6064 1 + 40216 18320 26883 26899 39493 39493 0.009303131409069465 SDNMQHAYW 9 Unmodified _SDNMQHAYW_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3222045898438 2 576.232373 1150.45019 NaN NaN NaN NaN NaN NaN NaN 28.379 1 28.379 27.879 28.879 0 0 0 0 0.19624 1 5038 5038 0.073264 0 1 40217 5434 26884 26900 39494 39494 -0.11901425370410834 SDNSHKIK 8 Unmodified _SDNSHKIK_ 0 0 0 tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1 tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1 tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 11.143 1 10.076 9.5763 10.576 -1.0664 0 0 0 0.2396 1 1244 1244 0.0082765 0 1 40218 26470 26885 26901 39495 39495 0.010754262322734576 SDPKIQEVY 9 Unmodified _SDPKIQEVY_ 0 0 0 PLD1|p.M193Cfs*16|1|0.32|ENSG00000075651|chr3:171733473-171733473|T/-|frameshift_variant;ENST00000475273.6_1_3:171439220-171455712:-|nuORF;PLD1|p.K294Efs*13|1|0.23|ENSG00000075651|chr3:171713918-171713924|CATATTT/-|frameshift_variant;nc|ENSG00000075651|Q13393-3|PLD1;nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1 PLD1|p.M193Cfs*16|1|0.32|ENSG00000075651|chr3:171733473-171733473|T/-|frameshift_variant PLD1|p.M193Cfs*16|1|0.32|ENSG00000075651|chr3:171733473-171733473|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2600708007812 2 539.774396 1077.53424 0.31641 0.00017079 -0.063979 -3.4534E-05 0.25243 0.00013626 539.7742989489119 153.29 0.81593 148.52 148.08 148.9 -4.7684 51 22 4 0 0 0 0.58804 1 30445 30445 13.906 2.2658 1 12274000 40219 1523 26886 26902 39496 39496 -0.0014257100183385774 SDPRLPKLTP 10 Unmodified _SDPRLPKLTP_ 0 0 0 ENSG00000179058|ENST00000372478|C9orf50 ENSG00000179058|ENST00000372478|C9orf50 ENSG00000179058|ENST00000372478|C9orf50 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.218994140625 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 55.384 1 52.248 51.748 52.748 -3.1352 0 0 0 0.22588 1 10234 10234 7.9454 1.7396 1 40220 6607 26887 26903 39497 39497 0.08329389914410967 SDQELTVK 8 Unmodified _SDQELTVK_ 0 0 0 REV__ENSG00000075826|ENST00000370345|SEC31B REV__ENSG00000075826|ENST00000370345|SEC31B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2416687011719 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 108.63 1 104.31 103.81 104.81 -4.32 0 0 0 0.23487 1 21406 21406 0.12286 0 1 + 40221 14339 26888 26904 39498 39498 0.0033318441828669165 SDQTDEDGEPG 11 Unmodified _SDQTDEDGEPG_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3331909179688 2 575.212554 1148.41056 0.51861 0.00029831 0.056921 3.2742E-05 0.57553 0.00033105 575.2128119864103 29.62 0.94092 27.546 27.205 28.146 -2.0743 59 26 3 0 0 0 0.7876 1 5028 5028 5.2969 1.3525 1 1466500 40222 2874 26889 26905 39499 39499 -0.15771318630800124 SDRAYSWYQHQ 11 Unmodified _SDRAYSWYQHQ_ 0 0 0 NDST3|p.P761Hfs*5|1|0.26|ENSG00000164100|chr4:118240682-118240682|C/-|frameshift_variant;ENSG00000164100|ENST00000296499|NDST3;ENSG00000138653|ENST00000264363|NDST4 NDST3|p.P761Hfs*5|1|0.26|ENSG00000164100|chr4:118240682-118240682|C/-|frameshift_variant NDST3|p.P761Hfs*5|1|0.26|ENSG00000164100|chr4:118240682-118240682|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25177001953125 3 480.881219 1439.62183 -0.62055 -0.00029841 -0.14057 -6.7598E-05 -0.76112 -0.00036601 481.2154050006002 14.417 0.38608 13.244 12.965 13.351 -1.173 17 10 2 0 0 0 0.96216 1 1964 1964 1.3296 0 1 484280 40223 5507 26890 26906 39500 39500 -0.0803997707837425 SDRGTQLRWFK 11 Unmodified _SDRGTQLRWFK_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2489318847656 3 465.249354 1392.72623 NaN NaN NaN NaN NaN NaN NaN 127.63 1 122.93 122.43 123.43 -4.6998 0 0 0 0.22632 1 24552 24552 3.0723 2.9003 1 40224 4444 26891 26907 39501 39501 0.04557769468942752 SDRPCPLK 8 Unmodified _SDRPCPLK_ 0 0 0 REV__ENSG00000174145|ENST00000309447|NWD2 REV__ENSG00000174145|ENST00000309447|NWD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2308349609375 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 88.256 1 84.506 84.006 85.006 -3.7501 0 0 0 0.23312 1 16891 16891 6.2058 0 1 + 40225 18395 26892 26908 39502 39502 0.003732718485252917 SDRYCVHRQK 10 Unmodified _SDRYCVHRQK_ 0 0 0 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.0933532714844 3 431.215656 1290.62514 0.021322 9.1945E-06 0.1954 8.426E-05 0.21672 9.3454E-05 431.21569586366746 14.584 0.59729 14.584 14.244 14.842 0 47 16 5 0 0 0 0.91149 1 2120 2120 0.62683 0 1 8107900 + 40226 17614 26893 26909 39503 39503 -0.008550055053774486 SDRYCVHRQK 10 Unmodified _SDRYCVHRQK_ 0 0 0 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 431.215656 1290.62514 -0.68601 -0.00029582 0.6708 0.00028926 -0.015209 -6.5584E-06 431.21595147911114 15.636 0.6248 14.421 13.994 14.619 -1.2159 -0.04801 0.00028558 NaN 0.62683 48 17 4 NaN NaN NaN NaN 0 NaN NaN 0 6222500 + 40227 17614 26893 26909 -0.008550055053774486 SDRYCVHRQK 10 Unmodified _SDRYCVHRQK_ 0 0 0 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 431.215656 1290.62514 -0.59623 -0.0002571 0.51884 0.00022373 -0.077393 -3.3373E-05 431.2158821177861 15.623 0.57685 14.401 14.067 14.644 -1.2219 -0.067802 8.8995E-05 NaN 0.62683 44 16 4 NaN NaN NaN NaN 0 NaN NaN 0 3610400 + 40228 17614 26893 26909 -0.008550055053774486 SDRYLRFS 8 Unmodified _SDRYLRFS_ 0 0 0 REV__ENST00000376723.7_1_2:128849017-128855062:+|nuORF REV__ENST00000376723.7_1_2:128849017-128855062:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2686157226562 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 143.67 1 138.65 138.15 139.15 -5.0261 0 0 0 0.22757 1 27699 27699 0.25148 0 1 + 40229 21080 26894 26910 39504 39504 3.401640651645721E-05 SDSAMEHGVMA 11 Unmodified _SDSAMEHGVMA_ 0 0 0 REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 379.1583251953125 3 378.823324 1133.44814 -0.32468 -0.000123 0.5846 0.00022146 0.25992 9.8462E-05 378.8235348763417 71.604 0.59898 68.065 67.731 68.33 -3.5385 24 16 2 0 0 0 0.54604 1 13587 13587 8.4443 8.036 1 1807500 + 40230 16803 26895 26911 39505 39505 -0.11324222170514986 SDSAMEHGVMA 11 Unmodified _SDSAMEHGVMA_ 0 0 0 REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 378.823324 1133.44814 -0.47696 -0.00018069 0.96449 0.00036537 0.48753 0.00018469 378.823585808972 68.126 0.42833 68.126 67.826 68.254 0 0.072233 0.0005931 NaN 8.4443 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1590900 + 40231 16803 26895 26911 -0.11324222170514986 SDSAMEHGVMA 11 Unmodified _SDSAMEHGVMA_ 0 0 0 REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 378.823324 1133.44814 0.31786 0.00012041 -0.065769 -2.4915E-05 0.25209 9.5497E-05 378.8232787762484 71.598 0.5331 67.97 67.699 68.233 -3.6275 -0.083762 -0.00057776 NaN 8.4443 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1486100 + 40232 16803 26895 26911 -0.11324222170514986 SDSAMEHGVMA 11 Unmodified _SDSAMEHGVMA_ 0 0 0 REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 378.823324 1133.44814 -0.32468 -0.000123 0.5846 0.00022146 0.25992 9.8462E-05 378.8235348763417 71.604 0.59898 68.065 67.731 68.33 -3.5385 0.011528 0.00016136 NaN 8.4443 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1807500 + 40233 16803 26895 26911 -0.11324222170514986 SDSFCCCFCW 10 Unmodified _SDSFCCCFCW_ 0 0 0 L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|252|2|anti-sense L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|252|2|anti-sense L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|252|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 600.7319946289062 2 600.684498 1199.35444 NaN NaN NaN NaN NaN NaN NaN 166.48 1 166.48 165.98 166.98 0 0 0 0 2.8426 1 33918 33918 0.0013812 0 1 40234 12059 26896 26912 39506 39506 -0.23725980868812258 SDSPSFFE 8 Unmodified _SDSPSFFE_ 0 0 0 ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant;ADNP|p.A1012Sfs*11|1|0.25|ENSG00000101126|chr20:50891681-50891682|-/G|frameshift_variant;ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2313537597656 2 458.190165 914.365778 NaN NaN NaN NaN NaN NaN NaN 69.318 1 69.318 68.818 69.818 0 0 0 0 0.22676 1 13417 13417 0.063987 0.034705 1 40235 85 26897 26913 39507 39507 -0.09483052915504686 SDTDGRRL 8 Unmodified _SDTDGRRL_ 0 0 0 KCNK13|p.V391Wfs*7|3|0.33|ENSG00000152315|chr14:90184941-90184941|G/-|frameshift_variant;ENSG00000152315|ENST00000282146|KCNK13 KCNK13|p.V391Wfs*7|3|0.33|ENSG00000152315|chr14:90184941-90184941|G/-|frameshift_variant KCNK13|p.V391Wfs*7|3|0.33|ENSG00000152315|chr14:90184941-90184941|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2324523925781 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 155.66 1 150.88 150.38 151.38 -4.7791 0 0 0 0.21486 1 30943 30943 5.7604 1.0044 1 40236 4916 26898 26914 39508 39508 -0.010580482901445976 SDTPNRMPY 9 Unmodified _SDTPNRMPY_ 0 0 0 REV__ENST00000475774.5_1_9:36066843-36085921:+|nuORF REV__ENST00000475774.5_1_9:36066843-36085921:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2630615234375 2 540.742573 1079.47059 0.15148 8.1913E-05 0.71642 0.0003874 0.8679 0.00046931 541.2435582265722 57.165 0.79705 53.975 53.584 54.381 -3.1895 45 22 3 0 0 0 0.77732 1 10620 10620 18.135 0 1 997700 + 40237 15702 26899 26915 39509 39509 -0.0659625471059826 SDTPNRMPY 9 Unmodified _SDTPNRMPY_ 0 0 0 REV__ENST00000475774.5_1_9:36066843-36085921:+|nuORF REV__ENST00000475774.5_1_9:36066843-36085921:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.26220703125 2 540.742573 1079.47059 0.12911 6.9814E-05 0.0018434 9.9683E-07 0.13095 7.0811E-05 541.2434150044922 57.153 0.78179 53.977 53.615 54.397 -3.1761 50 21 3 0 0 0 0.77732 1 10666 10666 12.532 0 1 1562400 + 40238 15702 26899 26915 39510 39510 -0.0659625471059826 SDTYWIPGHQG 11 Unmodified _SDTYWIPGHQG_ 0 0 0 ENST00000437840.6_1_6:33264453-33266669:-|nuORF;ENST00000478610.5_1_6:33264453-33265760:-|nuORF;ENST00000494550.5_1_6:33264453-33265064:-|nuORF ENST00000437840.6_1_6:33264453-33266669:-|nuORF ENST00000437840.6_1_6:33264453-33266669:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7689208984375 2 630.785827 1259.5571 NaN NaN NaN NaN NaN NaN NaN 139.14 1 139.14 138.64 139.64 0 0 0 0 0.22632 1 27649 27649 0.50596 0.33396 1 40239 9854 26900 26916 39511 39511 -0.06229551884371176 SDVLDGSH 8 Unmodified _SDVLDGSH_ 0 0 0 REV__nc|ENSG00000130997|Q7Z5Q5-3|POLN REV__nc|ENSG00000130997|Q7Z5Q5-3|POLN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.18670654296875 2 415.187957 828.361361 NaN NaN NaN NaN NaN NaN NaN 99.742 1 95.445 94.945 95.945 -4.297 0 0 0 0.22647 1 19069 19069 0.68139 0.42991 1 + 40240 16047 26901 26917 39512 39512 -0.05968517338408219 SDVRGNFYQ 9 Unmodified _SDVRGNFYQ_ 0 0 0 ENSG00000112139|ENST00000434837|MDGA1;nc|ENSG00000112139|Q8NFP4-2|MDGA1;MDGA1|p.T139M|1|0.33|ENSG00000112139|chr6:37655863-37655863|G/A|missense_variant;ENST00000478143.2_1_6:37623406-37626141:-|nuORF ENSG00000112139|ENST00000434837|MDGA1 ENSG00000112139|ENST00000434837|MDGA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7796020507812 2 543.254163 1084.49377 0.67137 0.00036473 1.013 0.00055033 1.6844 0.00091506 543.254648917347 30.617 0.45929 28.5 28.224 28.683 -2.1167 21 12 2 0 0 0 0.7906 1 5539 5539 13.042 6.3193 1 763730 40241 2671 26902 26918 39513 39513 -0.045094926016190584 SDYRSRSIRY 10 Unmodified _SDYRSRSIRY_ 0 0 0 REV__GCLC|p.K326R|1|0.41|ENSG00000001084|chr6:53507587-53507587|T/C|missense_variant REV__GCLC|p.K326R|1|0.41|ENSG00000001084|chr6:53507587-53507587|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.89361572265625 3 434.889825 1301.64765 NaN NaN NaN NaN NaN NaN NaN 39.151 1 36.602 36.102 37.102 -2.5491 0 0 0 0.22588 1 7273 7273 3.5871 1.6807 1 + 40242 23566 26903 26919 39514 39514 0.008889171639111737 SDYSPVRQLS 10 Unmodified _SDYSPVRQLS_ 0 0 0 REV__nc|ENSG00000134954|P14921-4|ETS1 REV__nc|ENSG00000134954|P14921-4|ETS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3251953125 2 576.288202 1150.56185 0.55986 0.00032264 -0.74201 -0.00042761 -0.18215 -0.00010497 576.2879384110348 43.936 0.95749 43.936 43.433 44.39 0 57 27 4 0 0 0 0.15224 1 8216 8216 47.749 0.1543 1 15356000 + 40243 16238 26904 26920 39515 39515 -0.007406677416156526 SEAAAPRAF 9 Unmodified _SEAAAPRAF_ 0 0 0 ENST00000432615.5_1_7:158447451-158457424:-|nuORF;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2 ENST00000432615.5_1_7:158447451-158457424:-|nuORF ENST00000432615.5_1_7:158447451-158457424:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2265319824219 2 460.235242 918.45593 0.46922 0.00021595 -0.07735 -3.5599E-05 0.39187 0.00018035 460.23515033228017 43.396 0.34558 43.396 43.19 43.535 0 22 9 3 0 0 0 0.40602 1 8147 8147 25.399 2.2509 1 1069800 40244 4675 26905 26921 39516 39516 -0.006559587964375169 SEAAAPRAF 9 Unmodified _SEAAAPRAF_ 0 0 0 ENST00000432615.5_1_7:158447451-158457424:-|nuORF;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2 ENST00000432615.5_1_7:158447451-158457424:-|nuORF ENST00000432615.5_1_7:158447451-158457424:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2442321777344 2 460.235242 918.45593 -0.11261 -5.1826E-05 0.62122 0.00028591 0.50861 0.00023408 460.2354201455822 46.227 0.55655 43.386 43.102 43.659 -2.8409 31 15 3 0 0 0 0.5059 1 8774 8774 19.257 1.122 1 2305800 40245 4675 26905 26921 39517 39517 -0.006559587964375169 SEAAAPRAF 9 Unmodified _SEAAAPRAF_ 0 0 0 ENST00000432615.5_1_7:158447451-158457424:-|nuORF;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2 ENST00000432615.5_1_7:158447451-158457424:-|nuORF ENST00000432615.5_1_7:158447451-158457424:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23541259765625 2 460.235242 918.45593 -0.05854 -2.6942E-05 0.36277 0.00016696 0.30423 0.00014002 460.2353307348203 46.31 0.48504 43.445 43.172 43.657 -2.8653 29 13 3 0 0 0 0.13708 1 8409 8409 46.021 11.919 1 1695800 40246 4675 26905 26921 39518 39518 -0.006559587964375169 SEAAAPRAF 9 Unmodified _SEAAAPRAF_ 0 0 0 ENST00000432615.5_1_7:158447451-158457424:-|nuORF;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2 ENST00000432615.5_1_7:158447451-158457424:-|nuORF ENST00000432615.5_1_7:158447451-158457424:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2354736328125 2 460.235242 918.45593 -0.10285 -4.7337E-05 0.68357 0.0003146 0.58072 0.00026727 460.2354550786252 46.27 0.55023 43.404 43.131 43.681 -2.8666 38 15 3 0 0 0 0.13708 4 8454 8409;8435;8452;8454 46.021 30.367 1 1806400 40247 4675 26905 26921 39519;39520;39521;39522 39522 -0.006559587964375169 SEAALKEAT 9 Unmodified _SEAALKEAT_ 0 0 0 REV__ENSG00000104967|ENST00000263257|NOVA2 REV__ENSG00000104967|ENST00000263257|NOVA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.230224609375 2 460.24019 918.465826 0.032335 1.4882E-05 -0.31084 -0.00014306 -0.27851 -0.00012818 460.2398847957939 37.639 0.47937 35.291 35.099 35.578 -2.3479 19 13 2 0 0 0 0.60805 1 6683 6683 12.532 0 1 657540 + 40248 14956 26906 26922 39523 39523 0.003331844182639543 SEAAMEGATL 10 Unmodified _SEAAMEGATL_ 0 0 0 nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6 nc|ENSG00000094631|Q9UBN7-2|HDAC6 nc|ENSG00000094631|Q9UBN7-2|HDAC6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2650451660156 2 490.223682 978.432811 NaN NaN NaN NaN NaN NaN NaN 97.639 1 93.541 93.041 94.041 -4.0978 0 0 0 0.22323 1 19162 19162 24.021 0 1 40249 1847 26907 26923 39524 39524 -0.057267656960675595 SEAASAVVSPS 11 Unmodified _SEAASAVVSPS_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.S825Pfs*25|1|0.34|ENSG00000107862|chr10:102367124-102367124|T/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1006.493408203125 1 1004.48948 1003.4822 0.12972 0.0001303 -0.31725 -0.00031867 -0.18753 -0.00018837 1004.4891598968085 56.219 0.8518 53.043 52.587 53.438 -3.1761 56 23 3 0 0 0 0.35625 1 10440 10440 51.63 3.8811 1 18017000 40250 2443 26908 26924 39525 39525 -0.01939734415611838 SEAASAVVSPS 11 Unmodified _SEAASAVVSPS_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.S825Pfs*25|1|0.34|ENSG00000107862|chr10:102367124-102367124|T/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 1004.48948 1003.4822 -0.27487 -0.0002761 0.049552 4.9775E-05 -0.22532 -0.00022633 1004.4895306020637 55.897 0.85662 53.013 52.525 53.382 -2.8837 -0.024631 0.00033956 NaN 51.63 58 24 3 NaN NaN NaN NaN 0 NaN NaN 0 17911000 40251 2443 26908 26924 -0.01939734415611838 SEAASAVVSPS 11 Unmodified _SEAASAVVSPS_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.S825Pfs*25|1|0.34|ENSG00000107862|chr10:102367124-102367124|T/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 1004.48948 1003.4822 0.30075 0.0003021 -0.60873 -0.00061146 -0.30798 -0.00030936 1004.4887630130789 56.247 0.84151 53.058 52.529 53.37 -3.1895 0.019519 -0.00032167 NaN 51.63 59 23 3 NaN NaN NaN NaN 0 NaN NaN 0 18457000 40252 2443 26908 26924 -0.01939734415611838 SEAATARGR 9 Unmodified _SEAATARGR_ 0 0 0 ENST00000424751.2_1_10:42971086-42971329:+|nuORF ENST00000424751.2_1_10:42971086-42971329:+|nuORF ENST00000424751.2_1_10:42971086-42971329:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2438049316406 2 459.741222 917.467892 0.13533 6.2217E-05 0.47176 0.00021689 0.60709 0.00027911 459.74133542838473 84.65 2.2989 80.741 79.79 82.088 -3.9093 142 65 3 0 0 0 0.62102 1 15948 15948 11.64 3.047 1 4340800 40253 9707 26909 26925 39526 39526 0.005856579467604206 SEAATEKPS 9 Unmodified _SEAATEKPS_ 0 0 0 MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2282409667969 2 460.221997 918.429441 -0.068308 -3.1437E-05 -0.93077 -0.00042836 -0.99908 -0.0004598 460.2220698542409 43.953 0.76962 41.206 40.905 41.674 -2.7475 42 21 3 0 0 0 0.55979 1 7888 7888 15.847 1.9411 1 613200 40254 5772 26910 26926 39527 39527 -0.03303692478425546 SEAATPCIK 9 Unmodified _SEAATPCIK_ 0 0 0 nc|ENSG00000088881|Q9BQW3-1|EBF4;EBF4|p.E365Rfs*9|1|0.41|ENSG00000088881|chr20:2751770-2751770|C/-|frameshift_variant;ENST00000609967.5_1_20:2674291-2732741:+|nuORF;ENSG00000088881|ENST00000609451|EBF4 nc|ENSG00000088881|Q9BQW3-1|EBF4 nc|ENSG00000088881|Q9BQW3-1|EBF4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.232421875 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 51.623 1 48.741 48.241 49.241 -2.8824 0 0 0 0.22621 1 9810 9810 15.847 4.2069 1 40255 12245 26911 26927 39528 39528 -0.014418541082363845 SEACFYNS 8 Unmodified _SEACFYNS_ 0 0 0 nc|ENSG00000123989|Q8IZ52-2|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF;ENSG00000123989|ENST00000243776|CHPF nc|ENSG00000123989|Q8IZ52-2|CHPF nc|ENSG00000123989|Q8IZ52-2|CHPF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.52435302734375 3 307.453337 919.338183 -0.53585 -0.00016475 1.4419 0.00044331 0.90603 0.00027856 307.4527182271105 18.492 0.59234 18.492 18.23 18.822 0 35 16 3 0 0 0 0.88497 1 2986 2986 10.074 1.9184 1 928850 40256 3287 26912 26928 39529 39529 -0.1247127944740214 SEADHINEE 9 Unmodified _SEADHINEE_ 0 0 0 REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171 REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2805786132812 2 522.217443 1042.42033 NaN NaN NaN NaN NaN NaN NaN 59.887 1 59.887 59.387 60.387 0 0 0 0 0.23508 1 11476 11476 11.64 2.2929 1 + 40257 17734 26913 26929 39530 39530 -0.09918085834783597 SEADHINEE 9 Unmodified _SEADHINEE_ 0 0 0 REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171 REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2708129882812 2 522.217443 1042.42033 NaN NaN NaN NaN NaN NaN NaN 62.596 1 62.596 62.096 63.096 0 0 0 0 0.23508 1 12021 12021 7.2892 0.56607 1 + 40258 17734 26913 26929 39531 39531 -0.09918085834783597 SEADIRGFVA 10 Unmodified _SEADIRGFVA_ 0 0 0 ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP;ENST00000487162.1_1_22:50967616-50968379:-|nuORF;TYMP|p.L223Pfs*54|1|0.03|ENSG00000025708|chr22:50527262-50527263|-/GTTTCTTACTGAGAATGCCTCCATTCTCAGCCCCTCCACGG|frameshift_variant;ENST00000476284.1_1_22:50964673-50968379:-|nuORF ENSG00000025708|ENST00000252029|TYMP ENSG00000025708|ENST00000252029|TYMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2738037109375 2 532.772188 1063.52982 -0.07103 -3.7843E-05 0.20115 0.00010716 0.13012 6.9322E-05 532.7722664251648 90.544 1.4778 90.544 89.913 91.391 0 115 41 4 0 0 0 0.011572 1 17673 17673 103.82 60.051 1 67623000 40259 1140 26914 26930 39532 39532 0.0005996457523451681 SEADIRGFVA 10 Unmodified _SEADIRGFVA_ 0 0 0 ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP;ENST00000487162.1_1_22:50967616-50968379:-|nuORF;TYMP|p.L223Pfs*54|1|0.03|ENSG00000025708|chr22:50527262-50527263|-/GTTTCTTACTGAGAATGCCTCCATTCTCAGCCCCTCCACGG|frameshift_variant;ENST00000476284.1_1_22:50964673-50968379:-|nuORF ENSG00000025708|ENST00000252029|TYMP ENSG00000025708|ENST00000252029|TYMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.273681640625 2 532.772188 1063.52982 0.090004 4.7952E-05 -0.10885 -5.7991E-05 -0.018844 -1.0039E-05 532.772182057935 94.429 1.3957 90.438 90.001 91.397 -3.9907 89 39 4 0 0 0 0.011572 4 18499 18447;18455;18499;18592 103.82 59.965 1 50389000 40260 1140 26914 26930 39533;39534;39535;39536 39535 0.0005996457523451681 SEADIRGFVA 10 Unmodified _SEADIRGFVA_ 0 0 0 ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP;ENST00000487162.1_1_22:50967616-50968379:-|nuORF;TYMP|p.L223Pfs*54|1|0.03|ENSG00000025708|chr22:50527262-50527263|-/GTTTCTTACTGAGAATGCCTCCATTCTCAGCCCCTCCACGG|frameshift_variant;ENST00000476284.1_1_22:50964673-50968379:-|nuORF ENSG00000025708|ENST00000252029|TYMP ENSG00000025708|ENST00000252029|TYMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2734985351562 2 532.772188 1063.52982 0.57263 0.00030508 -0.58939 -0.00031401 -0.016759 -8.9285E-06 532.7719198740517 94.578 1.3601 90.387 90.018 91.378 -4.1911 82 38 4 0 0 0 0.01714 5 18045 17988;17996;18045;18094;18137 96.936 56.986 1 43865000 40261 1140 26914 26930 39537;39538;39539;39540;39541 39539 0.0005996457523451681 SEADIRGFVA 10 Unmodified _SEADIRGFVA_ 0 0 0 ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP;ENST00000487162.1_1_22:50967616-50968379:-|nuORF;TYMP|p.L223Pfs*54|1|0.03|ENSG00000025708|chr22:50527262-50527263|-/GTTTCTTACTGAGAATGCCTCCATTCTCAGCCCCTCCACGG|frameshift_variant;ENST00000476284.1_1_22:50964673-50968379:-|nuORF ENSG00000025708|ENST00000252029|TYMP ENSG00000025708|ENST00000252029|TYMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2734375 2 532.772188 1063.52982 0.081915 4.3642E-05 -0.091298 -4.8641E-05 -0.0093833 -4.9992E-06 532.7721942618671 94.288 1.3795 90.444 90.061 91.44 -3.844 101 39 4 0 0 0 0.0073143 3 18085 18040;18085;18178 107.1 61.4 1 53789000 40262 1140 26914 26930 39542;39543;39544 39543 0.0005996457523451681 SEADKIKVA 9 Unmodified _SEADKIKVA_ 0 0 0 ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF;ENSG00000178035|ENST00000326739|IMPDH2 ENST00000466147.5_1_3:49062090-49062580:-|nuORF ENST00000466147.5_1_3:49062090-49062580:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2463073730469 2 480.771657 959.528761 0.032587 1.5667E-05 -0.22633 -0.00010881 -0.19374 -9.3145E-05 480.77151011530117 28.165 0.69046 28.165 27.801 28.491 0 61 19 4 0 0 0 0.010315 3 4946 4946;4952;4993 103.82 54.269 1 35054000 40263 6553 26915 26931 39545;39546;39547 39545 0.047377502063341126 SEADKIKVA 9 Unmodified _SEADKIKVA_ 0 0 0 ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF;ENSG00000178035|ENST00000326739|IMPDH2 ENST00000466147.5_1_3:49062090-49062580:-|nuORF ENST00000466147.5_1_3:49062090-49062580:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24639892578125 2 480.771657 959.528761 0.58266 0.00028013 -0.58705 -0.00028224 -0.0043919 -2.1115E-06 480.7713377092627 29.906 0.80297 27.789 27.421 28.224 -2.1167 79 22 5 0 0 0 1.4163E-11 3 5376 5376;5387;5430 160.69 71.289 1 40389000 40264 6553 26915 26931 39548;39549;39550 39548 0.047377502063341126 SEADKIKVA 9 Unmodified _SEADKIKVA_ 0 0 0 ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF;ENSG00000178035|ENST00000326739|IMPDH2 ENST00000466147.5_1_3:49062090-49062580:-|nuORF ENST00000466147.5_1_3:49062090-49062580:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7744140625 2 480.771657 959.528761 0.36927 0.00017753 -0.41651 -0.00020025 -0.047241 -2.2712E-05 480.7714223400078 29.836 0.93861 27.943 27.547 28.485 -1.8928 77 26 4 0 0 0 0.05838 2 5093 5043;5093 67.838 31.711 1 47959000 40265 6553 26915 26931 39551;39552 39552 0.047377502063341126 SEADKIKVA 9 Unmodified _SEADKIKVA_ 0 0 0 ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF;ENSG00000178035|ENST00000326739|IMPDH2 ENST00000466147.5_1_3:49062090-49062580:-|nuORF ENST00000466147.5_1_3:49062090-49062580:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7744445800781 2 480.771657 959.528761 0.49189 0.00023649 -0.50367 -0.00024215 -0.011777 -5.6622E-06 480.7713770292293 29.958 0.94592 27.883 27.483 28.429 -2.0743 84 26 5 0 0 0 0.05838 3 5115 5068;5115;5163 67.838 29.663 1 37391000 40266 6553 26915 26931 39553;39554;39555 39554 0.047377502063341126 SEADRLLSA 9 Unmodified _SEADRLLSA_ 0 0 0 ENSG00000148602|ENST00000372105|LRIT1 ENSG00000148602|ENST00000372105|LRIT1 ENSG00000148602|ENST00000372105|LRIT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2514343261719 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 30.193 1 28.076 27.576 28.576 -2.1167 0 0 0 0.20294 1 5444 5444 22.736 0 1 40267 4751 26916 26932 39556 39556 0.005799891668630153 SEADRLLSA 9 Unmodified _SEADRLLSA_ 0 0 0 ENSG00000148602|ENST00000372105|LRIT1 ENSG00000148602|ENST00000372105|LRIT1 ENSG00000148602|ENST00000372105|LRIT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2510681152344 2 481.251089 960.487624 0.48036 0.00023118 -0.26885 -0.00012938 0.21152 0.00010179 481.2509986329913 30.358 0.42345 28.284 28.04 28.464 -2.0743 20 11 2 0 0 0 0.34411 1 5172 5172 29.082 4.0906 1 651620 40268 4751 26916 26932 39557 39557 0.005799891668630153 SEAEETNKA 9 Unmodified _SEAEETNKA_ 0 0 0 REV__ENST00000289081.7_1_9:97861422-97861515:-|nuORF REV__ENST00000289081.7_1_9:97861422-97861515:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2669982910156 2 489.722361 977.430169 0.2014 9.8629E-05 0.59625 0.000292 0.79765 0.00039063 489.7225442601876 25.613 0.51302 23.978 23.752 24.265 -1.6347 35 14 3 0 0 0 0.45972 1 4219 4219 8.1555 0 1 6098800 + 40269 20345 26917 26933 39558 39558 -0.0594489782937444 SEAEETNKA 9 Unmodified _SEAEETNKA_ 0 0 0 REV__ENST00000289081.7_1_9:97861422-97861515:-|nuORF REV__ENST00000289081.7_1_9:97861422-97861515:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.722361 977.430169 -0.30764 -0.00015066 1.167 0.00057152 0.85938 0.00042086 489.72278563718993 25.821 0.52302 23.899 23.671 24.194 -1.9222 -0.15257 0.00049753 NaN 8.1555 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2345900 + 40270 20345 26917 26933 -0.0594489782937444 SEAEFLARTA 10 Unmodified _SEAEFLARTA_ 0 0 0 ENSG00000122085|ENST00000391980|MTERF4 ENSG00000122085|ENST00000391980|MTERF4 ENSG00000122085|ENST00000391980|MTERF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7898559570312 2 547.77747 1093.54039 0.47638 0.00026095 -2.7478 -0.0015052 -2.2715 -0.0012443 547.775220209795 75.108 0.69482 75.108 74.851 75.546 0 28 19 2 0 0 0 0.093015 2 14581 14581;14602 62.869 17.213 1 2565200 40271 3207 26918 26934 39559;39560 39559 -0.0026405277033063612 SEAEFLARTA 10 Unmodified _SEAEFLARTA_ 0 0 0 ENSG00000122085|ENST00000391980|MTERF4 ENSG00000122085|ENST00000391980|MTERF4 ENSG00000122085|ENST00000391980|MTERF4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77734375 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 78.426 1 74.963 74.463 75.463 -3.4633 0 0 0 0.10243 1 15312 15312 59.052 15.194 1 40272 3207 26918 26934 39561 39561 -0.0026405277033063612 SEAEFLARTA 10 Unmodified _SEAEFLARTA_ 0 0 0 ENSG00000122085|ENST00000391980|MTERF4 ENSG00000122085|ENST00000391980|MTERF4 ENSG00000122085|ENST00000391980|MTERF4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7794799804688 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 78.694 1 74.889 74.389 75.389 -3.8048 0 0 0 0.067838 1 14926 14926 63.227 10.959 1 40273 3207 26918 26934 39562 39562 -0.0026405277033063612 SEAEFLARTA 10 Unmodified _SEAEFLARTA_ 0 0 0 ENSG00000122085|ENST00000391980|MTERF4 ENSG00000122085|ENST00000391980|MTERF4 ENSG00000122085|ENST00000391980|MTERF4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7769775390625 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 78.742 1 75.066 74.566 75.566 -3.676 0 0 0 0.071416 1 14999 14999 70.929 14.752 1 40274 3207 26918 26934 39563 39563 -0.0026405277033063612 SEAEFNQSPG 10 Unmodified _SEAEFNQSPG_ 0 0 0 REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2844848632812 2 533.22781 1064.44107 0.46695 0.00024899 0.76681 0.00040889 1.2338 0.00065788 533.2282983235078 103.34 0.68443 103.34 102.97 103.65 0 50 19 3 0 0 0 0.29062 1 20242 20242 38.176 5.8701 1 9086100 + 40275 14676 26919 26935 39564 39564 -0.08857495455094977 SEAEFNQSPG 10 Unmodified _SEAEFNQSPG_ 0 0 0 REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2850341796875 2 533.22781 1064.44107 0.46695 0.00024899 0.76681 0.00040889 1.2338 0.00065788 533.2282983235078 103.34 0.68443 103.34 102.97 103.65 0 50 19 3 0 0 0 0.22493 1 20338 20338 53.833 53.833 1 9086100 + 40276 14676 26919 26935 39565 39565 -0.08857495455094977 SEAEFNQSPG 10 Unmodified _SEAEFNQSPG_ 0 0 0 REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2763061523438 2 533.22781 1064.44107 0.29637 0.00015803 1.3156 0.00070152 1.612 0.00085956 533.2284509406356 107.96 0.86287 103.55 103.12 103.99 -4.4121 60 24 3 0 0 0 0.2022 1 20714 20714 62.573 62.573 1 12868000 + 40277 14676 26919 26935 39566 39566 -0.08857495455094977 SEAEFNQSPG 10 Unmodified _SEAEFNQSPG_ 0 0 0 REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2837524414062 2 533.22781 1064.44107 0.74872 0.00039924 0.84491 0.00045053 1.5936 0.00084977 533.2282328160276 107.65 0.69539 103.52 103.18 103.88 -4.135 51 19 3 0 0 0 0.26529 1 20695 20695 71.922 10.565 1 8063500 + 40278 14676 26919 26935 39567 39567 -0.08857495455094977 SEAEFQGYN 9 Unmodified _SEAEFQGYN_ 0 0 0 ENSG00000160294|ENST00000291688|MCM3AP ENSG00000160294|ENST00000291688|MCM3AP ENSG00000160294|ENST00000291688|MCM3AP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2789916992188 2 522.717079 1043.4196 0.54599 0.0002854 3.8573 0.0020163 4.4033 0.0023017 523.2201609306942 103.63 0.31116 103.63 103.41 103.72 0 12 8 2 0 0 0 0.65155 1 20370 20370 21.747 2.4897 1 720490 40279 5245 26920 26936 39568 39568 -0.100368804837899 SEAEIFYNA 9 Unmodified _SEAEIFYNA_ 0 0 0 ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3 ENSG00000184363|ENST00000331563|PKP3 ENSG00000184363|ENST00000331563|PKP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6856689453125 2 522.237647 1042.46074 0.56408 0.00029459 -0.46369 -0.00024215 0.1004 5.243E-05 522.2373624454325 103.31 1.2428 103.31 102.8 104.04 0 107 35 4 0 0 0 0.1793 1 20320 20320 39.957 11.47 1 123180000 40280 6907 26921 26937 39569 39569 -0.05879119444330172 SEAEIFYNA 9 Unmodified _SEAEIFYNA_ 0 0 0 ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3 ENSG00000184363|ENST00000331563|PKP3 ENSG00000184363|ENST00000331563|PKP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6781616210938 2 522.237647 1042.46074 -0.69953 -0.00036532 0.60191 0.00031434 -0.097627 -5.0984E-05 522.2379170522386 107.85 1.4901 103.53 103.03 104.52 -4.32 130 42 5 0 0 0 0.042631 1 21262 21262 74.423 34.465 1 150510000 40281 6907 26921 26937 39570 39570 -0.05879119444330172 SEAEIFYNA 9 Unmodified _SEAEIFYNA_ 0 0 0 ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3 ENSG00000184363|ENST00000331563|PKP3 ENSG00000184363|ENST00000331563|PKP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2572631835938 2 522.237647 1042.46074 -0.78149 -0.00040812 0.8064 0.00042113 0.024911 1.3009E-05 522.2380600877113 107.97 1.4462 103.56 103.02 104.47 -4.4121 122 41 5 0 0 0 1.3328E-06 2 20696 20696;20788 141.83 87.053 1 131270000 40282 6907 26921 26937 39571;39572 39571 -0.05879119444330172 SEAEKVTTP 9 Unmodified _SEAEKVTTP_ 0 0 0 ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000467009.1_1_1:155754962-155791309:-|nuORF;GON4L|p.Q673Efs*2|1|0.21|ENSG00000116580|chr1:155777695-155777696|TG/-|frameshift_variant ENSG00000116580|ENST00000368331|GON4L ENSG00000116580|ENST00000368331|GON4L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2455749511719 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 24.884 1 23.35 22.85 23.85 -1.5342 0 0 0 0.19657 1 4068 4068 4.897 4.8887 1 40283 2934 26922 26938 39573 39573 -0.0054283292729451205 SEAEKVTTP 9 Unmodified _SEAEKVTTP_ 0 0 0 ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000467009.1_1_1:155754962-155791309:-|nuORF;GON4L|p.Q673Efs*2|1|0.21|ENSG00000116580|chr1:155777695-155777696|TG/-|frameshift_variant ENSG00000116580|ENST00000368331|GON4L ENSG00000116580|ENST00000368331|GON4L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2362060546875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 24.986 1 23.452 22.952 23.952 -1.5342 0 0 0 0.19687 1 4090 4090 8.1555 3.2585 1 40284 2934 26922 26938 39574 39574 -0.0054283292729451205 SEAEKVTTP 9 Unmodified _SEAEKVTTP_ 0 0 0 ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000467009.1_1_1:155754962-155791309:-|nuORF;GON4L|p.Q673Efs*2|1|0.21|ENSG00000116580|chr1:155777695-155777696|TG/-|frameshift_variant ENSG00000116580|ENST00000368331|GON4L ENSG00000116580|ENST00000368331|GON4L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2451171875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 25.137 1 23.602 23.102 24.102 -1.5342 0 0 0 0.19687 1 4119 4119 8.1555 4.8742 1 40285 2934 26922 26938 39575 39575 -0.0054283292729451205 SEAEKVTTP 9 Unmodified _SEAEKVTTP_ 0 0 0 ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000467009.1_1_1:155754962-155791309:-|nuORF;GON4L|p.Q673Efs*2|1|0.21|ENSG00000116580|chr1:155777695-155777696|TG/-|frameshift_variant ENSG00000116580|ENST00000368331|GON4L ENSG00000116580|ENST00000368331|GON4L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2448425292969 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 25.371 1 23.517 23.017 24.017 -1.8534 0 0 0 0.19657 1 4165 4165 4.897 4.2156 1 40286 2934 26922 26938 39576 39576 -0.0054283292729451205 SEAELDRLGP 10 Unmodified _SEAELDRLGP_ 0 0 0 REV__LVRN|p.N383Tfs*4|1|0.1|ENSG00000172901|chr5:115992162-115992162|A/-|frameshift_variant REV__LVRN|p.N383Tfs*4|1|0.1|ENSG00000172901|chr5:115992162-115992162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.769775390625 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 17.725 1 17.725 17.225 18.225 0 0 0 0 0.22576 1 2818 2818 14.838 2.3067 1 + 40287 18316 26923 26939 39577 39577 -0.004043566329528403 SEAEPVQR 8 Unmodified _SEAEPVQR_ 0 0 0 ENSG00000149929|ENST00000279392|HIRIP3 ENSG00000149929|ENST00000279392|HIRIP3 ENSG00000149929|ENST00000279392|HIRIP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2303466796875 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 35.207 1 32.93 32.43 33.43 -2.2766 0 0 0 0.21039 1 6184 6184 16.942 0 1 40288 4816 26924 26940 39578 39578 -0.0148856652166387 SEAESMPPP 9 Unmodified _SEAESMPPP_ 0 0 0 AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 472.2631530761719 2 472.705125 943.395698 0.022092 1.0443E-05 -0.24082 -0.00011384 -0.21873 -0.00010339 472.70493711743694 42.337 1.5369 39.731 38.911 40.448 -2.606 71 43 2 0 0 0 0.38406 1 7654 7654 14.957 10.674 1 3208900 40289 145 26925 26941 39579 39579 -0.07826437241828899 SEAESMPPP 9 Unmodified _SEAESMPPP_ 0 0 0 AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 472.705125 943.395698 0.052903 2.5007E-05 -0.68713 -0.00032481 -0.63423 -0.0002998 472.70456400821945 39.528 1.7496 39.528 38.818 40.568 0 -0.080685 -0.00040367 NaN 14.957 74 49 2 NaN NaN NaN NaN 0 NaN NaN 0 2654900 40290 145 26925 26941 -0.07826437241828899 SEAESMPPP 9 Unmodified _SEAESMPPP_ 0 0 0 AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 472.705125 943.395698 -0.18164 -8.5864E-05 0.02668 1.2612E-05 -0.15496 -7.3252E-05 472.7049065159183 42.298 1.7613 39.579 38.797 40.558 -2.7191 -0.029971 0.00027117 NaN 14.957 90 49 3 NaN NaN NaN NaN 0 NaN NaN 0 3863300 40291 145 26925 26941 -0.07826437241828899 SEAESMPPP 9 Unmodified _SEAESMPPP_ 0 0 0 AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant AMBRA1|p.V648Wfs*84|1|0.15|ENSG00000110497|chr11:46542075-46542075|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 472.705125 943.395698 -0.10208 -4.8255E-05 -0.35383 -0.00016726 -0.45591 -0.00021551 472.70487638381775 42.248 1.6429 39.597 38.829 40.472 -2.651 -0.011948 -8.8566E-05 NaN 14.957 84 46 2 NaN NaN NaN NaN 0 NaN NaN 0 4128400 40292 145 26925 26941 -0.07826437241828899 SEAEVAVQK 9 Unmodified _SEAEVAVQK_ 0 0 0 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2549743652344 2 480.753464 959.492375 -0.0085196 -4.0958E-06 0.24131 0.00011601 0.23279 0.00011191 480.75348638421497 44.689 0.49064 41.923 41.664 42.155 -2.7661 22 13 2 0 0 0 0.25183 1 8090 8090 34.402 0 1 2364200 40293 5207 26926 26942 39580 39580 0.011008733096218748 SEAFWLLP 8 Unmodified _SEAFWLLP_ 0 0 0 REV__nc|ENSG00000073060|Q8WTV0-3|SCARB1 REV__nc|ENSG00000073060|Q8WTV0-3|SCARB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7822265625 2 481.752736 961.490919 NaN NaN NaN NaN NaN NaN NaN 21.735 1 20.261 19.761 20.761 -1.4742 0 0 0 0.21486 1 3688 3688 9.3474 0 1 + 40294 14297 26927 26943 39581 39581 0.008632840115296858 SEAGAARAW 9 Unmodified _SEAGAARAW_ 0 0 0 REV__ENST00000335756.8_1_2:27008888-27009161:+|nuORF REV__ENST00000335756.8_1_2:27008888-27009161:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2401123046875 2 459.725041 917.435529 -0.057234 -2.6312E-05 -0.82203 -0.00037791 -0.87926 -0.00040422 459.72457041776227 80.025 0.63398 76.515 76.121 76.755 -3.5102 27 17 2 0 0 0 0.53499 1 15570 15570 1.2148 0 1 1728500 + 40295 20660 26928 26944 39582 39582 -0.026491294562447365 SEAGAARAW 9 Unmodified _SEAGAARAW_ 0 0 0 REV__ENST00000335756.8_1_2:27008888-27009161:+|nuORF REV__ENST00000335756.8_1_2:27008888-27009161:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2402038574219 2 459.725041 917.435529 -0.15701 -7.218E-05 -0.79381 -0.00036493 -0.95081 -0.00043711 459.72459270699613 80.182 0.48438 76.506 76.247 76.731 -3.676 22 13 2 0 0 0 0.38406 1 15238 15238 1.6919 0 1 960800 + 40296 20660 26928 26944 39583 39583 -0.026491294562447365 SEAGEPLCSD 10 Unmodified _SEAGEPLCSD_ 0 0 0 REV__ENSG00000254470|ENST00000532090|AP5B1 REV__ENSG00000254470|ENST00000532090|AP5B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.84161376953125 3 336.471057 1006.39134 0.04807 1.6174E-05 -3.4344 -0.0011556 -3.3864 -0.0011394 336.80398968610825 24.921 0.37829 23.387 23.195 23.574 -1.5342 17 10 3 0 0 0 0.51405 1 4080 4080 3.8763 0 1 319620 + 40297 19847 26929 26945 39584 39584 -0.11159946455404679 SEAGLAGAPA 10 Unmodified _SEAGLAGAPA_ 0 0 0 ENSG00000177879|ENST00000316788|AP3S1 ENSG00000177879|ENST00000316788|AP3S1 ENSG00000177879|ENST00000316788|AP3S1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 423.2201232910156 2 422.213975 842.413397 -0.18864 -7.9647E-05 0.93764 0.00039589 0.749 0.00031624 422.2141975391616 44.562 0.70799 41.772 41.494 42.202 -2.79 35 19 3 0 0 0 0.70357 1 8373 8373 10.824 0 1 1580800 40298 6545 26930 26946 39585 39585 -0.014113539246750406 SEAGLAGAPA 10 Unmodified _SEAGLAGAPA_ 0 0 0 ENSG00000177879|ENST00000316788|AP3S1 ENSG00000177879|ENST00000316788|AP3S1 ENSG00000177879|ENST00000316788|AP3S1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3771362304688 1 843.420673 842.413397 0.34667 0.00029239 -0.28055 -0.00023662 0.06612 5.5767E-05 843.420424700098 44.622 0.63552 41.832 41.459 42.095 -2.79 28 17 2 0 0 0 0.079919 1 8421 8421 68.081 3.8444 1 2274200 40299 6545 26930 26946 39586 39586 -0.014113539246750406 SEAGLAGAPA 10 Unmodified _SEAGLAGAPA_ 0 0 0 ENSG00000177879|ENST00000316788|AP3S1 ENSG00000177879|ENST00000316788|AP3S1 ENSG00000177879|ENST00000316788|AP3S1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 843.420673 842.413397 0.20471 0.00017266 0.054316 4.5811E-05 0.25903 0.00021847 843.4207626849361 44.678 0.63293 41.912 41.629 42.261 -2.7661 0.0079356 -1.4917E-05 NaN 68.081 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2293000 40300 6545 26930 26946 -0.014113539246750406 SEAGLAGAPA 10 Unmodified _SEAGLAGAPA_ 0 0 0 ENSG00000177879|ENST00000316788|AP3S1 ENSG00000177879|ENST00000316788|AP3S1 ENSG00000177879|ENST00000316788|AP3S1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 422.213975 842.413397 -0.058943 -2.4887E-05 0.17672 7.4614E-05 0.11778 4.9728E-05 422.21396973157016 44.678 0.59639 41.912 41.629 42.225 -2.7661 0.069974 -0.00031681 NaN 10.824 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1026200 40301 6545 26930 26946 -0.014113539246750406 SEAGLAGAPA 10 Unmodified _SEAGLAGAPA_ 0 0 0 ENSG00000177879|ENST00000316788|AP3S1 ENSG00000177879|ENST00000316788|AP3S1 ENSG00000177879|ENST00000316788|AP3S1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 843.420673 842.413397 0.07176 6.0524E-05 0.37634 0.00031741 0.4481 0.00037794 843.4207872380563 44.715 0.70521 41.968 41.568 42.273 -2.7475 0.063666 0.00025669 NaN 68.081 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1933000 40302 6545 26930 26946 -0.014113539246750406 SEAGLVPDQ 9 Unmodified _SEAGLVPDQ_ 0 0 0 REV__ENST00000292408.8_1_5:176513967-176516637:+|nuORF REV__ENST00000292408.8_1_5:176513967-176516637:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23828125 2 458.224539 914.434526 0.25496 0.00011683 0.020185 9.2491E-06 0.27514 0.00012608 458.2244631751317 36.739 0.64006 34.402 34.061 34.701 -2.3375 27 17 2 0 0 0 0.58804 1 6427 6427 13.906 0.86358 1 706530 + 40303 20358 26931 26947 39587 39587 -0.026113886158100286 SEAGLVPDQ 9 Unmodified _SEAGLVPDQ_ 0 0 0 REV__ENST00000292408.8_1_5:176513967-176516637:+|nuORF REV__ENST00000292408.8_1_5:176513967-176516637:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.223876953125 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 79.551 1 75.875 75.375 76.375 -3.676 0 0 0 0.1599 1 15155 15155 29.082 0 1 + 40304 20358 26931 26947 39588 39588 -0.026113886158100286 SEAGTQPQV 9 Unmodified _SEAGTQPQV_ 0 0 0 nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 nc|ENSG00000120694|Q92598-3|HSPH1 nc|ENSG00000120694|Q92598-3|HSPH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.24114990234375 2 458.722164 915.429775 0.30966 0.00014205 -0.13654 -6.2633E-05 0.17312 7.9413E-05 458.7220795428128 26.809 1.3708 26.809 26.294 27.665 0 75 39 2 0 0 0 0.12505 1 4777 4777 47.749 3.8904 1 8095500 40305 3147 26932 26948 39589 39589 -0.03132272758568888 SEAGTQPQV 9 Unmodified _SEAGTQPQV_ 0 0 0 nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 nc|ENSG00000120694|Q92598-3|HSPH1 nc|ENSG00000120694|Q92598-3|HSPH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2245178222656 2 458.722164 915.429775 0.22688 0.00010407 -0.0040056 -1.8375E-06 0.22287 0.00010224 458.7221357660463 28.388 1.5798 26.633 26.175 27.755 -1.7552 81 44 2 0 0 0 0.02941 1 4748 4748 114.65 7.462 1 7307100 40306 3147 26932 26948 39590 39590 -0.03132272758568888 SEAGTQPQV 9 Unmodified _SEAGTQPQV_ 0 0 0 nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 nc|ENSG00000120694|Q92598-3|HSPH1 nc|ENSG00000120694|Q92598-3|HSPH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2344055175781 2 458.722164 915.429775 0.34572 0.00015859 -0.21276 -9.7598E-05 0.13296 6.099E-05 458.72204332095043 28.496 1.4624 26.5 26.134 27.597 -1.9962 76 41 2 0 0 0 4.0983E-10 1 4808 4808 147.06 20.493 1 5120600 40307 3147 26932 26948 39591 39591 -0.03132272758568888 SEAIFLLRP 9 Unmodified _SEAIFLLRP_ 0 0 0 ENST00000439255.1_1_3:197680941-197682621:+|nuORF;ENST00000485439.5_1_3:197680941-197681022:+|nuORF ENST00000439255.1_1_3:197680941-197682621:+|nuORF ENST00000439255.1_1_3:197680941-197682621:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6892700195312 2 523.305667 1044.59678 0.19593 0.00010253 0.28526 0.00014928 0.4812 0.00025181 523.3057575313916 155.68 0.79178 155.68 155.28 156.07 0 35 22 2 0 0 0 0.13932 2 31240 31240;31253 45.7 24.163 1 5054600 40308 9871 26933 26949 39592;39593 39592 0.07626619856978323 SEAIFLLRP 9 Unmodified _SEAIFLLRP_ 0 0 0 ENST00000439255.1_1_3:197680941-197682621:+|nuORF;ENST00000485439.5_1_3:197680941-197681022:+|nuORF ENST00000439255.1_1_3:197680941-197682621:+|nuORF ENST00000439255.1_1_3:197680941-197682621:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6922607421875 2 523.305667 1044.59678 -0.012364 -6.4701E-06 -0.029865 -1.5628E-05 -0.042228 -2.2098E-05 523.3057413517407 160.36 0.95287 155.56 154.98 155.93 -4.7952 38 26 2 0 0 0 0.089388 1 31850 31850 75.761 42.975 1 4011000 40309 9871 26933 26949 39594 39594 0.07626619856978323 SEAIFLLRP 9 Unmodified _SEAIFLLRP_ 0 0 0 ENST00000439255.1_1_3:197680941-197682621:+|nuORF;ENST00000485439.5_1_3:197680941-197681022:+|nuORF ENST00000439255.1_1_3:197680941-197682621:+|nuORF ENST00000439255.1_1_3:197680941-197682621:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7010498046875 2 523.305667 1044.59678 -0.39711 -0.00020781 0.52919 0.00027693 0.13208 6.9117E-05 523.306049840925 160.87 0.95813 155.64 155.12 156.08 -5.2299 49 26 3 0 0 0 0.23492 1 31315 31315 53.833 26.204 1 3271400 40310 9871 26933 26949 39595 39595 0.07626619856978323 SEAIFLLRP 9 Unmodified _SEAIFLLRP_ 0 0 0 ENST00000439255.1_1_3:197680941-197682621:+|nuORF;ENST00000485439.5_1_3:197680941-197681022:+|nuORF ENST00000439255.1_1_3:197680941-197682621:+|nuORF ENST00000439255.1_1_3:197680941-197682621:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6959228515625 2 523.305667 1044.59678 0.4949 0.00025898 3.5215 0.0018428 4.0164 0.0021018 523.3061742078992 160.25 0.23698 155 154.82 155.06 -5.2526 9 6 3 0 0 0 0.54076 1 31099 31099 17.113 4.0704 1 1560000 40311 9871 26933 26949 39596 39596 0.07626619856978323 SEAIFLLRP 9 Unmodified _SEAIFLLRP_ 0 0 0 ENST00000439255.1_1_3:197680941-197682621:+|nuORF;ENST00000485439.5_1_3:197680941-197681022:+|nuORF ENST00000439255.1_1_3:197680941-197682621:+|nuORF ENST00000439255.1_1_3:197680941-197682621:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6832275390625 2 523.305667 1044.59678 0.49995 0.00026163 -0.7366 -0.00038546 -0.23664 -0.00012384 523.3052182366042 160.82 0.87943 155.57 155.25 156.12 -5.2526 37 24 2 0 0 0 0.089388 1 31189 31189 66.457 40.189 1 4312400 40312 9871 26933 26949 39597 39597 0.07626619856978323 SEAIHKNY 8 Unmodified _SEAIHKNY_ 0 0 0 REV__ENST00000577949.5_1_15:25213208-25213397:+|nuORF REV__ENST00000577949.5_1_15:25213208-25213397:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7807922363281 2 481.240524 960.466495 -0.27366 -0.0001317 1.5783 0.00075954 1.3046 0.00062785 481.24140725558385 24.85 0.30361 22.997 22.846 23.15 -1.8534 12 8 2 0 0 0 0.73426 1 4029 4029 9.3474 0.75416 1 648820 + 40313 23221 26934 26950 39598 39598 -0.015319761420187206 SEAIIARR 8 Unmodified _SEAIIARR_ 0 0 0 nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3 nc|ENSG00000138834|Q9UPT6|MAPK8IP3 nc|ENSG00000138834|Q9UPT6|MAPK8IP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.24169921875 2 458.272158 914.529764 NaN NaN NaN NaN NaN NaN NaN 22.694 1 20.906 20.406 21.406 -1.7886 0 0 0 0.21452 1 3616 3616 13.508 4.1604 1 40314 4214 26935 26951 39599 39599 0.06908009365895396 SEAILEKVA 9 Unmodified _SEAILEKVA_ 0 0 0 REV__ENSG00000068394|ENST00000156109|GPKOW REV__ENSG00000068394|ENST00000156109|GPKOW MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25457763671875 2 480.274032 958.533512 0.20783 9.9815E-05 -0.16362 -7.8582E-05 0.04421 2.1233E-05 480.2739135658299 82.394 0.98489 82.394 81.889 82.874 0 44 27 2 0 0 0 0.52396 1 16084 16084 18.146 0 1 2320700 + 40315 14226 26936 26952 39600 39600 0.05258634349092972 SEAILEKVA 9 Unmodified _SEAILEKVA_ 0 0 0 REV__ENSG00000068394|ENST00000156109|GPKOW REV__ENSG00000068394|ENST00000156109|GPKOW MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.274032 958.533512 0.20783 9.9815E-05 -0.16362 -7.8582E-05 0.04421 2.1233E-05 480.2739135658299 82.394 0.98489 82.394 81.889 82.874 0 0.26382 -0.00014513 NaN 18.146 44 27 2 NaN NaN NaN NaN 0 NaN NaN 0 2320700 + 40316 14226 26936 26952 0.05258634349092972 SEAILEKVA 9 Unmodified _SEAILEKVA_ 0 0 0 REV__ENSG00000068394|ENST00000156109|GPKOW REV__ENSG00000068394|ENST00000156109|GPKOW MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.274032 958.533512 -0.01872 -8.9906E-06 0.29359 0.000141 0.27487 0.00013201 480.2740811632903 85.814 1.0736 82.15 81.431 82.505 -3.6641 0.019591 0.00029404 NaN 18.146 41 29 2 NaN NaN NaN NaN 0 NaN NaN 0 2631700 + 40317 14226 26936 26952 0.05258634349092972 SEAILEKVA 9 Unmodified _SEAILEKVA_ 0 0 0 REV__ENSG00000068394|ENST00000156109|GPKOW REV__ENSG00000068394|ENST00000156109|GPKOW MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.274032 958.533512 0.25874 0.00012427 -0.19691 -9.4569E-05 0.061835 2.9698E-05 480.2738599780546 85.909 0.98322 81.958 81.526 82.51 -3.9503 -0.17182 -0.00017711 NaN 18.146 38 27 2 NaN NaN NaN NaN 0 NaN NaN 0 2368100 + 40318 14226 26936 26952 0.05258634349092972 SEAILEKVA 9 Unmodified _SEAILEKVA_ 0 0 0 REV__ENSG00000068394|ENST00000156109|GPKOW REV__ENSG00000068394|ENST00000156109|GPKOW MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.274032 958.533512 0.012733 6.1152E-06 0.005384 2.5858E-06 0.018117 8.7009E-06 480.27396944023707 85.748 0.97155 82.019 81.581 82.553 -3.7289 -0.11159 1.7205E-05 NaN 18.146 41 27 2 NaN NaN NaN NaN 0 NaN NaN 0 2077200 + 40319 14226 26936 26952 0.05258634349092972 SEAKENLI 8 Unmodified _SEAKENLI_ 0 0 0 SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-5|SMG7 SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7472229003906 2 452.242732 902.470912 -0.047352 -2.1414E-05 0.0098326 4.4467E-06 -0.037519 -1.6968E-05 452.2427074094974 40.042 0.92431 37.502 37.075 37.999 -2.5398 85 25 5 0 0 0 0.62642 1 7190 7190 20.454 0 1 72388000 40320 2943 26937 26953 39601 39601 0.0157748828091826 SEAKENLI 8 Unmodified _SEAKENLI_ 0 0 0 SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-5|SMG7 SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7471008300781 2 452.242732 902.470912 0.063697 2.8807E-05 -0.06986 -3.1594E-05 -0.0061629 -2.7871E-06 452.2426679065873 39.979 1.0233 37.49 36.983 38.006 -2.4896 81 28 5 0 0 0 0.52597 1 7162 7162 26.884 0 1 65028000 40321 2943 26937 26953 39602 39602 0.0157748828091826 SEAKHYRA 8 Unmodified _SEAKHYRA_ 0 0 0 REV__ENST00000526192.1_1_6:133074642-133078971:-|nuORF REV__ENST00000526192.1_1_6:133074642-133078971:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24578857421875 2 481.246141 960.477728 -0.30752 -0.00014799 -0.36842 -0.0001773 -0.67594 -0.00032529 481.24591869732234 19.152 0.49875 17.827 17.469 17.968 -1.3251 26 13 2 0 0 0 8448 1 2840 2840 0.25148 0 1 1447400 + 40322 22691 26938 26954 39603 39603 -0.004091540478725619 SEAKPAAVAA 10 Unmodified _SEAKPAAVAA_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2308349609375 2 457.750724 913.486896 0.24221 0.00011087 -0.089377 -4.0913E-05 0.15283 6.9957E-05 457.75068691616906 20.223 1.3036 20.223 19.928 21.231 0 86 36 5 0 0 0 0.43443 1 3294 3294 28.495 6.7479 1 56179000 40323 4065 26939 26955 39604 39604 0.026691945177958587 SEAKTQGSGP 10 Unmodified _SEAKTQGSGP_ 0 0 0 POLH|p.F708Lfs*4|1|0.28|ENSG00000170734|chr6:43614534-43614534|T/-|frameshift_variant;ENSG00000170734|ENST00000372236|POLH POLH|p.F708Lfs*4|1|0.28|ENSG00000170734|chr6:43614534-43614534|T/-|frameshift_variant POLH|p.F708Lfs*4|1|0.28|ENSG00000170734|chr6:43614534-43614534|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2326965332031 2 481.232896 960.451239 -0.015525 -7.4712E-06 -0.71097 -0.00034214 -0.7265 -0.00034961 481.23355134172544 21.041 0.45567 21.041 20.668 21.124 0 15 12 3 0 0 0 0.6817 1 3456 3456 13.042 2.9685 1 343350 40324 6092 26940 26956 39605 39605 -0.030568877298492225 SEALFKSF 8 Unmodified _SEALFKSF_ 0 0 0 MLLT3|p.S312I|1|0.31|ENSG00000171843|chr9:20413911-20413911|C/A|missense_variant;ENST00000475957.1_1_9:20363472-20620706:-|nuORF;nc|ENSG00000171843|P42568-2|MLLT3;ENSG00000171843|ENST00000380338|MLLT3 MLLT3|p.S312I|1|0.31|ENSG00000171843|chr9:20413911-20413911|C/A|missense_variant MLLT3|p.S312I|1|0.31|ENSG00000171843|chr9:20413911-20413911|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2422790527344 2 464.742368 927.470183 0.15685 7.2895E-05 0.20637 9.591E-05 0.36322 0.00016881 464.74255456448293 122.11 0.49787 117.56 117.35 117.85 -4.5476 21 13 2 0 0 0 0.51112 2 24049 24044;24049 27.629 22.048 1 1475900 40325 6179 26941 26957 39606;39607 39607 0.00354693631857117 SEALFKSF 8 Unmodified _SEALFKSF_ 0 0 0 MLLT3|p.S312I|1|0.31|ENSG00000171843|chr9:20413911-20413911|C/A|missense_variant;ENST00000475957.1_1_9:20363472-20620706:-|nuORF;nc|ENSG00000171843|P42568-2|MLLT3;ENSG00000171843|ENST00000380338|MLLT3 MLLT3|p.S312I|1|0.31|ENSG00000171843|chr9:20413911-20413911|C/A|missense_variant MLLT3|p.S312I|1|0.31|ENSG00000171843|chr9:20413911-20413911|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2449645996094 2 464.742368 927.470183 0.48998 0.00022772 0.29812 0.00013855 0.7881 0.00036627 464.74248824488257 122.25 0.61743 117.56 117.2 117.82 -4.6873 21 17 2 0 0 0 8448 1 23503 23503 36.506 22.891 1 1570700 40326 6179 26941 26957 39608 39608 0.00354693631857117 SEALFKSF 8 Unmodified _SEALFKSF_ 0 0 0 MLLT3|p.S312I|1|0.31|ENSG00000171843|chr9:20413911-20413911|C/A|missense_variant;ENST00000475957.1_1_9:20363472-20620706:-|nuORF;nc|ENSG00000171843|P42568-2|MLLT3;ENSG00000171843|ENST00000380338|MLLT3 MLLT3|p.S312I|1|0.31|ENSG00000171843|chr9:20413911-20413911|C/A|missense_variant MLLT3|p.S312I|1|0.31|ENSG00000171843|chr9:20413911-20413911|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2436218261719 2 464.742368 927.470183 0.3177 0.00014765 0.29015 0.00013484 0.60785 0.00028249 464.74253635323583 122.14 0.57136 117.61 117.22 117.8 -4.5305 15 15 2 0 0 0 0.95624 1 23531 23531 17.113 4.5813 1 1225300 40327 6179 26941 26957 39609 39609 0.00354693631857117 SEALHTKAV 9 Unmodified _SEALHTKAV_ 0 0 0 TGM6|p.Q360Rfs*99|3|0.3|ENSG00000166948|chr20:2403480-2403480|C/-|frameshift_variant;nc|ENSG00000166948|O95932-2|TGM6;ENSG00000166948|ENST00000202625|TGM6 TGM6|p.Q360Rfs*99|3|0.3|ENSG00000166948|chr20:2403480-2403480|C/-|frameshift_variant TGM6|p.Q360Rfs*99|3|0.3|ENSG00000166948|chr20:2403480-2403480|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.18218994140625 3 319.178425 954.513445 -0.14256 -4.5504E-05 -0.083451 -2.6636E-05 -0.22602 -7.2139E-05 319.1783529836233 30.369 0.53038 28.295 28.04 28.571 -2.0743 43 14 4 0 0 0 0.55728 1 5228 5228 0.029283 0 1 7640100 40328 5771 26942 26958 39610 39610 0.03436883409119673 SEALRESY 8 Unmodified _SEALRESY_ 0 0 0 REV__ENST00000460905.5_1_21:44073924-44119091:+|nuORF REV__ENST00000460905.5_1_21:44073924-44119091:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73284912109375 2 477.729989 953.445425 0.083815 4.0041E-05 0.09003 4.301E-05 0.17384 8.3051E-05 477.73001296479043 37.145 0.85629 34.797 34.311 35.167 -2.3479 48 24 4 0 0 0 0.52597 1 6559 6559 26.884 2.8631 1 4141500 + 40329 21886 26943 26959 39611 39611 -0.033159862415232055 SEAMNAHTP 9 Unmodified _SEAMNAHTP_ 0 0 0 nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19 nc|ENSG00000172046|O94966|USP19 nc|ENSG00000172046|O94966|USP19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74267578125 2 479.208366 956.40218 -0.05601 -2.6841E-05 -0.1198 -5.7409E-05 -0.17581 -8.425E-05 479.2082789442601 21.916 0.65648 21.916 21.602 22.258 0 25 18 2 0 0 0 0.73268 1 3626 3626 18.146 0 1 680460 40330 12463 26944 26960 39612 39612 -0.07776499290469019 SEAMNAHTP 9 Unmodified _SEAMNAHTP_ 0 0 0 nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19 nc|ENSG00000172046|O94966|USP19 nc|ENSG00000172046|O94966|USP19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.728759765625 2 479.208366 956.40218 0.82407 0.0003949 -1.0024 -0.00048035 -0.17831 -8.545E-05 479.2078730848953 23.406 0.87991 21.853 21.372 22.252 -1.5532 36 24 2 0 0 0 0.13813 1 4077 4077 62.573 45.63 1 768330 40331 12463 26944 26960 39613 39613 -0.07776499290469019 SEAMNAHTP 9 Unmodified _SEAMNAHTP_ 0 0 0 nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19 nc|ENSG00000172046|O94966|USP19 nc|ENSG00000172046|O94966|USP19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7221374511719 2 479.208366 956.40218 -0.057186 -2.7404E-05 0.15085 7.2289E-05 0.093666 4.4885E-05 479.2083806284429 23.3 0.83944 21.846 21.333 22.173 -1.4535 35 23 2 0 0 0 0.12542 1 3741 3741 39.95 18.203 1 955480 40332 12463 26944 26960 39614 39614 -0.07776499290469019 SEAMNAHTP 9 Unmodified _SEAMNAHTP_ 0 0 0 nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19 nc|ENSG00000172046|O94966|USP19 nc|ENSG00000172046|O94966|USP19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7422180175781 2 479.208366 956.40218 -0.41218 -0.00019752 0.30301 0.0001452 -0.10917 -5.2315E-05 479.2084347291974 23.669 0.72516 21.881 21.324 22.049 -1.7886 30 20 2 0 0 0 0.73268 1 3744 3744 18.146 12.916 1 679270 40333 12463 26944 26960 39615 39615 -0.07776499290469019 SEANLLLSAE 10 Unmodified _SEANLLLSAE_ 0 0 0 SOCS3|p.G54S|1|0.4|ENSG00000184557|chr17:78358936-78358936|C/T|missense_variant SOCS3|p.G54S|1|0.4|ENSG00000184557|chr17:78358936-78358936|C/T|missense_variant SOCS3|p.G54S|1|0.4|ENSG00000184557|chr17:78358936-78358936|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6854248046875 2 523.771854 1045.52915 -0.22858 -0.00011972 -0.68945 -0.00036111 -0.91802 -0.00048084 523.7717066749269 47.068 0.34492 44.227 44.074 44.419 -2.8409 15 9 2 0 0 0 0.29062 1 8889 8889 38.176 9.094 1 1403900 40334 25707 26945 26961 39616 39616 0.008211251355305649 SEANLLLSAE 10 Unmodified _SEANLLLSAE_ 0 0 0 SOCS3|p.G54S|1|0.4|ENSG00000184557|chr17:78358936-78358936|C/T|missense_variant SOCS3|p.G54S|1|0.4|ENSG00000184557|chr17:78358936-78358936|C/T|missense_variant SOCS3|p.G54S|1|0.4|ENSG00000184557|chr17:78358936-78358936|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6858520507812 2 523.771854 1045.52915 -0.041232 -2.1596E-05 -0.41967 -0.00021981 -0.4609 -0.00024141 523.7719733625025 47.187 0.41581 44.237 44.087 44.502 -2.9499 17 11 2 0 0 0 0.45099 1 8600 8600 43.772 10.987 1 1329700 40335 25707 26945 26961 39617 39617 0.008211251355305649 SEAPHAPGVP 10 Unmodified _SEAPHAPGVP_ 0 0 0 nc|ENSG00000137090|Q9Y5R6-3|DMRT1;DMRT1|p.G259Afs*17|1|0.3|ENSG00000137090|chr9:894146-894146|G/-|frameshift_variant;nc|ENSG00000137090|Q9Y5R6-2|DMRT1;ENST00000564322.1_1_9:841703-894198:+|nuORF;ENSG00000137090|ENST00000382276|DMRT1 nc|ENSG00000137090|Q9Y5R6-3|DMRT1 nc|ENSG00000137090|Q9Y5R6-3|DMRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2403259277344 2 481.240524 960.466495 -0.31947 -0.00015374 0.62945 0.00030292 0.30998 0.00014918 481.2407568535047 37.97 0.52479 35.501 35.151 35.676 -2.4688 27 14 2 0 0 0 0.55366 1 7040 7040 21.747 0 1 689830 40336 855 26946 26962 39618 39618 -0.015319761420073519 SEAPHAPGVP 10 Unmodified _SEAPHAPGVP_ 0 0 0 nc|ENSG00000137090|Q9Y5R6-3|DMRT1;DMRT1|p.G259Afs*17|1|0.3|ENSG00000137090|chr9:894146-894146|G/-|frameshift_variant;nc|ENSG00000137090|Q9Y5R6-2|DMRT1;ENST00000564322.1_1_9:841703-894198:+|nuORF;ENSG00000137090|ENST00000382276|DMRT1 nc|ENSG00000137090|Q9Y5R6-3|DMRT1 nc|ENSG00000137090|Q9Y5R6-3|DMRT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2425537109375 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 21.289 1 19.815 19.315 20.315 -1.4742 0 0 0 0.22588 1 3594 3594 7.2892 0.56607 1 40337 855 26946 26962 39619 39619 -0.015319761420073519 SEAPHAPGVP 10 Unmodified _SEAPHAPGVP_ 0 0 0 nc|ENSG00000137090|Q9Y5R6-3|DMRT1;DMRT1|p.G259Afs*17|1|0.3|ENSG00000137090|chr9:894146-894146|G/-|frameshift_variant;nc|ENSG00000137090|Q9Y5R6-2|DMRT1;ENST00000564322.1_1_9:841703-894198:+|nuORF;ENSG00000137090|ENST00000382276|DMRT1 nc|ENSG00000137090|Q9Y5R6-3|DMRT1 nc|ENSG00000137090|Q9Y5R6-3|DMRT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23736572265625 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 21.074 1 19.69 19.19 20.19 -1.3847 0 0 0 0.22588 1 3299 3299 10.824 1.4408 1 40338 855 26946 26962 39620 39620 -0.015319761420073519 SEAPPSKMV 9 Oxidation (M) _SEAPPSKM(Oxidation (M))V_ SEAPPSKM(1)V SEAPPSKM(44)V 0 0 1 ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;ENSG00000163374|ENST00000355499|YY1AP1 ENSG00000116580|ENST00000368331|GON4L ENSG00000116580|ENST00000368331|GON4L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2366943359375 2 481.236593 960.458632 -0.06568 -3.1608E-05 -3.1825 -0.0015315 -3.2482 -0.0015631 481.23514919133453 17.836 0.81705 17.836 17.378 18.195 0 63 22 4 0 0 0 0.058674 1 2810 2810 43.982 39.266 1 16072000 40339 2934 26947 26963 39621 39621 36 -0.023178714537721135 SEAPPSKMV 9 Oxidation (M) _SEAPPSKM(Oxidation (M))V_ SEAPPSKM(1)V SEAPPSKM(62)V 0 0 1 ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;ENSG00000163374|ENST00000355499|YY1AP1 ENSG00000116580|ENST00000368331|GON4L ENSG00000116580|ENST00000368331|GON4L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23651123046875 2 481.236593 960.458632 0.10211 4.9139E-05 -3.5301 -0.0016988 -3.4279 -0.0016497 481.2349575560895 19.024 1.0786 17.627 17.265 18.344 -1.3966 81 30 4 0 0 0 0.080883 1 3170 3170 61.602 17.744 1 12742000 40340 2934 26947 26963 39622 39622 36 -0.023178714537721135 SEAPPSKMV 9 Oxidation (M) _SEAPPSKM(Oxidation (M))V_ SEAPPSKM(1)V SEAPPSKM(58)V 0 0 1 ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;ENSG00000163374|ENST00000355499|YY1AP1 ENSG00000116580|ENST00000368331|GON4L ENSG00000116580|ENST00000368331|GON4L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2365417480469 2 481.236593 960.458632 -0.30578 -0.00014715 -0.71753 -0.0003453 -1.0233 -0.00049245 481.2362604144012 18.984 1.3339 17.659 17.295 18.629 -1.3251 78 37 3 0 0 0 0.094316 1 2944 2944 57.722 23.62 1 4147700 40341 2934 26947 26963 39623 39623 36 -0.023178714537721135 SEAPPSKMV 9 Oxidation (M) _SEAPPSKM(Oxidation (M))V_ SEAPPSKM(1)V SEAPPSKM(56)V 0 0 1 ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;ENSG00000163374|ENST00000355499|YY1AP1 ENSG00000116580|ENST00000368331|GON4L ENSG00000116580|ENST00000368331|GON4L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23663330078125 2 481.236593 960.458632 -1.0985 -0.00052864 0.24893 0.00011979 -0.84958 -0.00040885 481.23679303521925 19.216 1.2113 17.581 17.217 18.428 -1.6351 78 34 3 0 0 0 0.10083 1 2935 2935 55.503 17.352 1 3093800 40342 2934 26947 26963 39624 39624 36 -0.023178714537721135 SEAPPTNQA 9 Unmodified _SEAPPTNQA_ 0 0 0 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2308349609375 2 457.714339 913.414125 0.19258 8.8148E-05 0.0087096 3.9865E-06 0.20129 9.2135E-05 457.71433254527653 16.749 0.93858 16.749 16.44 17.378 0 45 26 2 0 0 0 0.0071415 1 2649 2649 110.67 64.975 1 1255900 40343 6619 26948 26964 39625 39625 -0.04604559275617248 SEAPPTNQA 9 Unmodified _SEAPPTNQA_ 0 0 0 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2312927246094 2 457.714339 913.414125 -0.23864 -0.00010923 0.40199 0.000184 0.16336 7.4772E-05 457.71446554597645 17.876 1.4545 16.566 16.066 17.521 -1.3109 102 41 3 0 0 0 0.012534 1 2970 2970 99.755 54.056 1 2933000 40344 6619 26948 26964 39626 39626 -0.04604559275617248 SEAPPTNQA 9 Unmodified _SEAPPTNQA_ 0 0 0 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2353210449219 2 457.714339 913.414125 -0.46589 -0.00021325 0.7692 0.00035207 0.30331 0.00013883 457.7145898044843 17.741 0.95513 16.469 16.178 17.133 -1.2722 47 27 2 0 0 0 0.09885 2 2606 2606;2708 56.177 33.784 1 1003700 40345 6619 26948 26964 39627;39628 39627 -0.04604559275617248 SEAPPTNQATA 11 Unmodified _SEAPPTNQATA_ 0 0 0 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7805786132812 2 543.756735 1085.49892 0.31098 0.0001691 0.30556 0.00016615 0.61654 0.00033525 543.7572321744342 20.173 1.1597 20.173 19.791 20.951 0 48 32 2 0 0 0 0.54604 1 3365 3365 8.4443 7.2295 1 555770 40346 6619 26949 26965 39629 39629 -0.04041233529665078 SEAPPTNQATA 11 Unmodified _SEAPPTNQATA_ 0 0 0 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.785888671875 2 543.756735 1085.49892 0.73007 0.00039698 -0.40269 -0.00021897 0.32738 0.00017801 543.7566356008775 21.751 1.2 20.277 19.632 20.832 -1.4742 51 33 2 0 0 0 0.23831 2 3706 3706;3772 63.227 34.733 1 1001400 40347 6619 26949 26965 39630;39631 39630 -0.04041233529665078 SEAPPTNQATA 11 Unmodified _SEAPPTNQATA_ 0 0 0 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7836303710938 2 543.756735 1085.49892 -0.15086 -8.2032E-05 0.65705 0.00035727 0.50619 0.00027524 543.7572068916131 21.599 1.0083 20.214 19.757 20.765 -1.3847 47 28 2 0 0 0 0.47027 1 3440 3440 22.109 22.045 1 860480 40348 6619 26949 26965 39632 39632 -0.04041233529665078 SEAPPTNQATA 11 Unmodified _SEAPPTNQATA_ 0 0 0 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7841186523438 2 543.756735 1085.49892 -0.56182 -0.00030549 0.89407 0.00048616 0.33225 0.00018066 543.7573174049978 21.869 0.90083 20.147 19.74 20.641 -1.7211 44 25 2 0 0 0 0.42926 1 3483 3483 28.495 11.382 1 473360 40349 6619 26949 26965 39633 39633 -0.04041233529665078 SEAPPTNQATA 11 Unmodified _SEAPPTNQATA_ 0 0 0 ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF ENST00000485420.5_1_X:51636757-51640983:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.779541015625 2 543.756735 1085.49892 NaN NaN NaN NaN NaN NaN NaN 22.501 1 20.712 20.212 21.212 -1.7886 0 0 0 0.23018 1 3576 3576 8.1555 0.24537 1 40350 6619 26949 26965 39634 39634 -0.04041233529665078 SEAPQTNPI 9 Unmodified _SEAPQTNPI_ 0 0 0 ENST00000427574.6_1_11:76156052-76156124:+|nuORF ENST00000427574.6_1_11:76156052-76156124:+|nuORF ENST00000427574.6_1_11:76156052-76156124:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72772216796875 2 478.737814 955.461075 0.22197 0.00010627 -0.28599 -0.00013691 -0.064021 -3.0649E-05 478.73780590664893 44.664 0.87637 44.664 44.357 45.233 0 34 24 2 0 0 0 0.27986 1 8380 8380 32.786 6.5175 1 857820 40351 9744 26950 26966 39635 39635 -0.018436997244748454 SEAPQTNPI 9 Unmodified _SEAPQTNPI_ 0 0 0 ENST00000427574.6_1_11:76156052-76156124:+|nuORF ENST00000427574.6_1_11:76156052-76156124:+|nuORF ENST00000427574.6_1_11:76156052-76156124:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7379455566406 2 478.737814 955.461075 -0.050918 -2.4377E-05 0.0022798 1.0914E-06 -0.048639 -2.3285E-05 478.73783137976795 47.542 1.1958 44.673 44.149 45.345 -2.869 53 33 2 0 0 0 0.13932 5 8961 8961;8997;9007;9011;9055 45.7 14.431 1 1302300 40352 9744 26950 26966 39636;39637;39638;39639;39640 39636 -0.018436997244748454 SEAPQTNPI 9 Unmodified _SEAPQTNPI_ 0 0 0 ENST00000427574.6_1_11:76156052-76156124:+|nuORF ENST00000427574.6_1_11:76156052-76156124:+|nuORF ENST00000427574.6_1_11:76156052-76156124:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7378845214844 2 478.737814 955.461075 0.0030207 1.4461E-06 -0.64509 -0.00030883 -0.64207 -0.00030738 478.7374090536517 47.72 1.2903 44.778 44.134 45.425 -2.9421 58 36 2 0 0 0 0.13932 3 8700 8700;8742;8770 45.7 12.914 1 1317200 40353 9744 26950 26966 39641;39642;39643 39641 -0.018436997244748454 SEAQLARPPP 10 Unmodified _SEAQLARPPP_ 0 0 0 REV__ENSG00000081985|ENST00000674203|IL12RB2 REV__ENSG00000081985|ENST00000674203|IL12RB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2860107421875 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 42.917 1 40.198 39.698 40.698 -2.7191 0 0 0 0.22588 1 8036 8036 7.2892 0.56607 1 + 40354 14434 26951 26967 39644 39644 0.031759573291765264 SEARHLPER 9 Unmodified _SEARHLPER_ 0 0 0 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7774047851562 2 547.788704 1093.56285 0.20771 0.00011378 3.4033 0.0018643 3.611 0.0019781 547.7910851084604 78.695 0.32255 75.232 75.002 75.325 -3.4633 13 8 2 0 0 0 0.71527 1 15357 15357 19.257 2.3147 1 802420 40355 3919 26952 26968 39645 39645 0.019815914179389438 SEASAEHIEA 10 Unmodified _SEASAEHIEA_ 0 0 0 ENSG00000080200|ENST00000389622|CRYBG3 ENSG00000080200|ENST00000389622|CRYBG3 ENSG00000080200|ENST00000389622|CRYBG3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2590942382812 2 522.235635 1042.45672 0.39586 0.00020673 -1.0429 -0.00054465 -0.64706 -0.00033792 522.7367492317601 29.494 0.24794 27.538 27.441 27.689 -1.9561 8 6 2 0 0 0 0.85223 1 5314 5314 18.146 2.2992 1 440310 40356 1609 26953 26969 39646 39646 -0.06281208938048621 SEASALAPQ 9 Unmodified _SEASALAPQ_ 0 0 0 ENST00000599109.5_1_19:58869608-58874095:-|nuORF ENST00000599109.5_1_19:58869608-58874095:-|nuORF ENST00000599109.5_1_19:58869608-58874095:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2189025878906 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 63.456 1 60.458 59.958 60.958 -2.9975 0 0 0 0.22962 1 12261 12261 14.838 1.3304 1 40357 11688 26954 26970 39647 39647 -0.017353712702401936 SEASHWKQA 9 Unmodified _SEASHWKQA_ 0 0 0 nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9 nc|ENSG00000164169|Q6P2P2-2|PRMT9 nc|ENSG00000164169|Q6P2P2-2|PRMT9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279296875 2 522.24888 1042.48321 0.12539 6.5485E-05 0.42169 0.00022023 0.54708 0.00028571 522.2490651035185 16.977 0.56279 16.977 16.816 17.378 0 39 15 4 0 0 0 2.8988000000000002E-24 1 2668 2668 163.04 118.63 1 16266000 40358 5518 26955 26971 39648 39648 -0.03633475256037855 SEASHWKQA 9 Unmodified _SEASHWKQA_ 0 0 0 nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9 nc|ENSG00000164169|Q6P2P2-2|PRMT9 nc|ENSG00000164169|Q6P2P2-2|PRMT9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2667236328125 2 522.24888 1042.48321 -0.30054 -0.00015696 0.37238 0.00019448 0.071839 3.7518E-05 522.2490501135743 18.261 0.72972 16.95 16.725 17.454 -1.3109 44 20 4 0 0 0 1.6179E-72 1 2954 2954 223.81 179.4 1 16915000 40359 5518 26955 26971 39649 39649 -0.03633475256037855 SEASHWKQA 9 Unmodified _SEASHWKQA_ 0 0 0 nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9 nc|ENSG00000164169|Q6P2P2-2|PRMT9 nc|ENSG00000164169|Q6P2P2-2|PRMT9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.26708984375 2 522.24888 1042.48321 -1.1174 -0.00058358 1.1515 0.00060137 0.034056 1.7786E-05 522.2494184750382 18.392 0.58843 16.877 16.712 17.3 -1.5148 42 16 4 0 0 0 2.5958E-06 1 2739 2739 142.08 105.95 1 9425000 40360 5518 26955 26971 39650 39650 -0.03633475256037855 SEASSIRFAR 10 Unmodified _SEASSIRFAR_ 0 0 0 REV__ENST00000359491.1_1_14:64804837-64805239:-|nuORF REV__ENST00000359491.1_1_14:64804837-64805239:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2168884277344 3 375.2 1122.57817 NaN NaN NaN NaN NaN NaN NaN 104.18 1 99.837 99.337 100.34 -4.346 0 0 0 2.8426 1 19958 19958 0.013265 0 1 + 40361 20853 26956 26972 39651 39651 0.02178458215144019 SEASVFDAY 9 Unmodified _SEASVFDAY_ 0 0 0 ENST00000447425.1_1_7:22813267-22813561:-|nuORF;ENSG00000197728|ENST00000646449|RPS26 ENST00000447425.1_1_7:22813267-22813561:-|nuORF ENST00000447425.1_1_7:22813267-22813561:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 990.3817749023438 1 988.425818 987.418542 -0.33419 -0.00033032 0.32528 0.00032151 -0.0089072 -8.8041E-06 988.4259873187102 111.43 0.7334 107.01 106.71 107.45 -4.4231 43 20 3 0 0 0 0.12183 1 21995 21995 48.346 27.892 1 6996500 40362 7394 26957 26973 39652 39652 -0.07567094852709033 SEASVFDAY 9 Unmodified _SEASVFDAY_ 0 0 0 ENST00000447425.1_1_7:22813267-22813561:-|nuORF;ENSG00000197728|ENST00000646449|RPS26 ENST00000447425.1_1_7:22813267-22813561:-|nuORF ENST00000447425.1_1_7:22813267-22813561:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 988.425818 987.418542 0.14778 0.00014607 -0.0682 -6.7411E-05 0.079581 7.866E-05 988.4257267301364 111.58 0.76732 107.09 106.68 107.45 -4.4915 0.059611 -2.9762E-05 NaN 48.346 41 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5633400 40363 7394 26957 26973 -0.07567094852709033 SEASVFDAY 9 Unmodified _SEASVFDAY_ 0 0 0 ENST00000447425.1_1_7:22813267-22813561:-|nuORF;ENSG00000197728|ENST00000646449|RPS26 ENST00000447425.1_1_7:22813267-22813561:-|nuORF ENST00000447425.1_1_7:22813267-22813561:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 988.425818 987.418542 0.73381 0.00072532 -0.50057 -0.00049478 0.23324 0.00023054 988.425306493638 111.22 0.7307 106.99 106.62 107.35 -4.2289 -0.038065 -0.00045713 NaN 48.346 47 20 3 NaN NaN NaN NaN 0 NaN NaN 0 7023700 40364 7394 26957 26973 -0.07567094852709033 SEATTAMGY 9 Unmodified _SEATTAMGY_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25714111328125 2 465.6973 929.380048 1.0499 0.00048896 -0.85259 -0.00039705 0.19735 9.1907E-05 465.69687067961183 26.258 0.54739 24.476 24.213 24.76 -1.7821 34 15 3 0 0 0 0.13419 1 4671 4671 50.855 29.108 1 2181100 40365 6711 26958 26974 39653 39653 -0.08746723758883945 SEATTAMGY 9 Unmodified _SEATTAMGY_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23638916015625 2 465.6973 929.380048 0.088987 4.1441E-05 0.16195 7.5418E-05 0.25093 0.00011686 465.69735895958803 26.17 0.5236 24.535 24.265 24.789 -1.6347 28 14 3 0 0 0 0.54076 1 4360 4360 34.102 13.649 1 1993900 40366 6711 26958 26974 39654 39654 -0.08746723758883945 SEATTAMGY 9 Unmodified _SEATTAMGY_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2488098144531 2 465.6973 929.380048 0.013355 6.2195E-06 0.13394 6.2376E-05 0.1473 6.8596E-05 465.69731555341036 26.337 0.51677 24.415 24.159 24.675 -1.9222 23 14 2 0 0 0 0.23667 1 4334 4334 42.095 25.152 1 1245800 40367 6711 26958 26974 39655 39655 -0.08746723758883945 SEATWGRI 8 Unmodified _SEATWGRI_ 0 0 0 REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23529052734375 2 460.235242 918.45593 -0.05854 -2.6942E-05 0.36277 0.00016696 0.30423 0.00014002 460.2353307348203 46.31 0.48504 43.445 43.172 43.657 -2.8653 29 13 3 0 0 0 0.64512 1 8451 8451 19.257 0 1 1695800 + 40368 19301 26959 26975 39656 39656 -0.006559587964147795 SEATWGRI 8 Unmodified _SEATWGRI_ 0 0 0 REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.231201171875 2 460.235242 918.45593 -0.10285 -4.7337E-05 0.68357 0.0003146 0.58072 0.00026727 460.2354550786252 46.27 0.55023 43.404 43.131 43.681 -2.8666 38 15 3 0 0 0 0.64512 1 8362 8362 19.257 3.4098 1 1806400 + 40369 19301 26959 26975 39657 39657 -0.006559587964147795 SEAVCRVPP 9 Unmodified _SEAVCRVPP_ 0 0 0 ENST00000417819.5_1_X:19362058-19363912:+|nuORF ENST00000417819.5_1_X:19362058-19363912:+|nuORF ENST00000417819.5_1_X:19362058-19363912:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73779296875 2 479.244752 956.474951 -0.11588 -5.5536E-05 1.2441 0.00059625 1.1283 0.00054071 479.2456639321173 57.004 0.34558 54.11 53.888 54.234 -2.8944 11 9 2 0 0 0 0.74655 1 10940 10940 10.824 0 1 497340 40370 9633 26960 26976 39658 39658 -0.005027454970331746 SECDDEDSF 9 Unmodified _SECDDEDSF_ 0 0 0 REV__C9|p.C142Afs*6|1|0.25|ENSG00000113600|chr5:39341199-39341199|G/-|frameshift_variant REV__C9|p.C142Afs*6|1|0.25|ENSG00000113600|chr5:39341199-39341199|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.683837890625 2 523.666394 1045.31824 NaN NaN NaN NaN NaN NaN NaN 113.25 1 108.8 108.3 109.3 -4.4539 0 0 0 0.23508 1 22313 22313 4.3292 0 1 + 40371 13229 26961 26977 39659 39659 -0.2026111996869986 SECDDEDSF 9 Unmodified _SECDDEDSF_ 0 0 0 REV__C9|p.C142Afs*6|1|0.25|ENSG00000113600|chr5:39341199-39341199|G/-|frameshift_variant REV__C9|p.C142Afs*6|1|0.25|ENSG00000113600|chr5:39341199-39341199|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6849975585938 2 523.666394 1045.31824 NaN NaN NaN NaN NaN NaN NaN 140.01 1 135.16 134.66 135.66 -4.8492 0 0 0 0.19632 1 26997 26997 0.40827 0 1 + 40372 13229 26961 26977 39660 39660 -0.2026111996869986 SECKAKQSY 9 Unmodified _SECKAKQSY_ 0 0 0 ENSG00000225950|ENST00000593537|NTF4 ENSG00000225950|ENST00000593537|NTF4 ENSG00000225950|ENST00000593537|NTF4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2581176757812 2 522.244949 1042.47534 NaN NaN NaN NaN NaN NaN NaN 84.715 1 80.805 80.305 81.305 -3.9093 0 0 0 0.22621 1 16105 16105 15.847 4.2069 1 40373 7789 26962 26978 39661 39661 -0.044193705678253536 SECQPVDCY 9 Unmodified _SECQPVDCY_ 0 0 0 REV__CON__P06868 REV__CON__P06868 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.680908203125 2 522.194067 1042.37358 -0.2223 -0.00011608 0.060716 3.1706E-05 -0.16158 -8.4377E-05 522.1893970995852 45.756 0.65782 42.915 42.619 43.276 -2.8409 56 18 5 0 0 0 0.40602 1 8652 8652 25.399 1.3787 1 2320700 + + 40374 13523 26963 26979 39662 39662 -0.14590984981919064 SECSAQDDPGG 11 Unmodified _SECSAQDDPGG_ 0 0 0 REV__ENST00000313766.5_7:300492-300642:+|nuORF REV__ENST00000313766.5_7:300492-300642:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2859497070312 2 533.19311 1064.37167 0.052934 2.8224E-05 0.17885 9.5361E-05 0.23178 0.00012359 533.1918671994645 96.452 0.21146 96.452 96.387 96.598 0 6 5 2 0 0 0 0.90723 1 18897 18897 4.5289 1.2476 1 693080 + 40375 20508 26964 26980 39663 39663 -0.15794322466149424 SEDAEAIFY 9 Unmodified _SEDAEAIFY_ 0 0 0 REV__tr|U7T4S8|U7T4S8_FUSNUUDP-N-acetylmuramate--L-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murCPE=3SV=1 REV__tr|U7T4S8|U7T4S8_FUSNUUDP-N-acetylmuramate--L-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murCPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2723999023438 2 522.729655 1043.44476 -0.6585 -0.00034422 -2.671 -0.0013962 -3.3295 -0.0017404 523.2299026977942 46.226 0.31289 43.36 43.275 43.588 -2.8653 13 8 2 0 0 0 0.86532 1 8389 8389 8.5933 0 1 853950 + 40376 25393 26965 26981 39664 39664 -0.0752282568123519 SEDAGTVKI 9 Unmodified _SEDAGTVKI_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2402038574219 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 45.164 1 45.164 44.664 45.664 0 0 0 0 0.19687 1 8484 8484 8.1555 1.9497 1 40377 4208 26966 26982 39665 39665 0.0033318441828669165 SEDAGTVKI 9 Unmodified _SEDAGTVKI_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2402648925781 2 460.24019 918.465826 -0.15512 -7.1392E-05 0.60189 0.00027701 0.44677 0.00020562 460.2404396156311 47.804 0.45681 44.935 44.742 45.199 -2.869 21 12 2 0 0 0 0.21532 2 9067 9066;9067 36.506 12.33 1 1330000 40378 4208 26966 26982 39666;39667 39667 0.0033318441828669165 SEDAGTVKI 9 Unmodified _SEDAGTVKI_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24005126953125 2 460.24019 918.465826 -0.090265 -4.1544E-05 0.10569 4.8643E-05 0.015424 7.0989E-06 460.24030012327313 47.941 0.55349 44.991 44.708 45.261 -2.9499 20 15 2 0 0 0 0.41266 1 8795 8795 24.991 2.2547 1 954230 40379 4208 26966 26982 39668 39668 0.0033318441828669165 SEDCKKCKF 9 Unmodified _SEDCKKCKF_ 0 0 0 REV__ENST00000601416.1_19:21281704-21301132:+|nuORF REV__ENST00000601416.1_19:21281704-21301132:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7832641601562 2 544.249177 1086.4838 0.1277 6.9501E-05 -2.7129 -0.0014765 -2.5852 -0.001407 544.2482598995595 75.982 0.4162 72.26 71.964 72.38 -3.7227 13 11 2 0 0 0 0.69192 1 14347 14347 10.074 1.4806 1 1694900 + 40380 17418 26967 26983 39669 39669 -0.05598139922858536 SEDDSDFCE 9 Unmodified _SEDDSDFCE_ 0 0 0 nc|ENSG00000111247|Q96B01-3|RAD51AP1;ENSG00000111247|ENST00000352618|RAD51AP1;nc|ENSG00000111247|Q96B01|RAD51AP1 nc|ENSG00000111247|Q96B01-3|RAD51AP1 nc|ENSG00000111247|Q96B01-3|RAD51AP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6922607421875 2 523.666394 1045.31824 NaN NaN NaN NaN NaN NaN NaN 59.743 1 59.743 59.243 60.243 0 0 0 0 0.23508 1 11447 11447 4.3292 1.7518 1 40381 2610 26968 26984 39670 39670 -0.2026111996869986 SEDEADYYC 9 Unmodified _SEDEADYYC_ 0 0 0 nc|ENSG00000211648|P01700|IGLV1-47;nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36;nc|ENSG00000211651|P01699|IGLV1-44;nc|ENSG00000211645|A0A075B6I6|IGLV1-50;nc|ENSG00000211637|A0A075B6H9|IGLV4-69;nc|ENSG00000211654|A0A075B6J1|IGLV5-37;nc|ENSG00000211650|A0A087WSX0|IGLV5-45 nc|ENSG00000211648|P01700|IGLV1-47 nc|ENSG00000211648|P01700|IGLV1-47 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7789916992188 2 547.684587 1093.35462 NaN NaN NaN NaN NaN NaN NaN 22.822 1 21.034 20.534 21.534 -1.7886 0 0 0 0.23508 1 3641 3641 4.756 0 1 40382 12571 26969 26985 39671 39671 -0.18832243071960875 SEDEIKKAY 9 Unmodified _SEDEIKKAY_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2639770507812 2 541.771854 1081.52915 0.072852 3.9469E-05 -0.44771 -0.00024256 -0.37486 -0.00020309 541.7715720650671 26.182 0.58915 24.26 24.02 24.609 -1.9222 33 16 3 0 0 0 0.81703 1 4373 4373 14.838 6.0929 1 9940200 40383 5890 26970 26986 39672 39672 -0.0083487486449485 SEDEIKKAY 9 Unmodified _SEDEIKKAY_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.771854 1081.52915 0.35672 0.00019326 -0.46294 -0.00025081 -0.10622 -5.7546E-05 541.771496034715 24.316 0.51492 24.316 24.066 24.58 0 0.011698 5.1772E-05 NaN 25.399 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 11579000 40384 5890 26970 26986 -0.0083487486449485 SEDESSGLVY 10 Unmodified _SEDESSGLVY_ 0 0 0 ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79150390625 2 543.235301 1084.45605 0.082353 4.4737E-05 1.0456 0.00056799 1.1279 0.00061272 543.2337776016957 76.855 0.17675 73.089 72.946 73.123 -3.7664 6 4 2 0 0 0 0.871 1 14537 14537 10.074 1.4806 1 498850 40385 2630 26971 26987 39673 39673 -0.08280048377741878 SEDFGVKKA 9 Unmodified _SEDFGVKKA_ 0 0 0 ENST00000485844.1_1_13:111532446-111545420:-|nuORF;ENST00000310847.8_1_13:111545156-111545609:-|nuORF;ENSG00000088448|ENST00000267339|ANKRD10 ENST00000485844.1_1_13:111532446-111545420:-|nuORF ENST00000485844.1_1_13:111532446-111545420:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2523498535156 2 490.756007 979.497461 0.23426 0.00011497 -0.28213 -0.00013846 -0.047868 -2.3491E-05 490.75580307029793 24.793 0.50149 24.793 24.545 25.046 0 40 14 4 0 0 0 0.026483 1 4295 4295 63.961 24.003 1 9682200 40386 1731 26972 26988 39674 39674 0.006891771722393969 SEDFGVKKA 9 Unmodified _SEDFGVKKA_ 0 0 0 ENST00000485844.1_1_13:111532446-111545420:-|nuORF;ENST00000310847.8_1_13:111545156-111545609:-|nuORF;ENSG00000088448|ENST00000267339|ANKRD10 ENST00000485844.1_1_13:111532446-111545420:-|nuORF ENST00000485844.1_1_13:111532446-111545420:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25616455078125 2 490.756007 979.497461 1.1884 0.00058322 -1.1514 -0.00056506 0.037013 1.8164E-05 490.7553861103841 26.454 0.57712 24.672 24.416 24.993 -1.7821 46 16 4 0 0 0 8.535E-06 1 4665 4665 122.18 54.835 1 14640000 40387 1731 26972 26988 39675 39675 0.006891771722393969 SEDFGVKKA 9 Unmodified _SEDFGVKKA_ 0 0 0 ENST00000485844.1_1_13:111532446-111545420:-|nuORF;ENST00000310847.8_1_13:111545156-111545609:-|nuORF;ENSG00000088448|ENST00000267339|ANKRD10 ENST00000485844.1_1_13:111532446-111545420:-|nuORF ENST00000485844.1_1_13:111532446-111545420:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26513671875 2 490.756007 979.497461 0.21893 0.00010744 -0.20434 -0.00010028 0.014584 7.1573E-06 490.7558374181975 26.357 0.83899 24.722 24.443 25.282 -1.6347 52 23 4 0 0 0 0.00807 1 4385 4385 129.77 62.428 1 15230000 40388 1731 26972 26988 39676 39676 0.006891771722393969 SEDFGVKKA 9 Unmodified _SEDFGVKKA_ 0 0 0 ENST00000485844.1_1_13:111532446-111545420:-|nuORF;ENST00000310847.8_1_13:111545156-111545609:-|nuORF;ENSG00000088448|ENST00000267339|ANKRD10 ENST00000485844.1_1_13:111532446-111545420:-|nuORF ENST00000485844.1_1_13:111532446-111545420:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2652587890625 2 490.756007 979.497461 -0.19119 -9.3826E-05 0.11778 5.7801E-05 -0.073407 -3.6025E-05 490.75599504320127 26.549 0.686 24.627 24.368 25.054 -1.9222 51 19 4 0 0 0 0.028245 1 4434 4434 78.728 36.633 1 10697000 40389 1731 26972 26988 39677 39677 0.006891771722393969 SEDIEIILY 9 Unmodified _SEDIEIILY_ 0 0 0 tr|U7SSL4|U7SSL4_FUSNUProtein-argininerhamnosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01306PE=3SV=1 tr|U7SSL4|U7SSL4_FUSNUProtein-argininerhamnosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01306PE=3SV=1 tr|U7SSL4|U7SSL4_FUSNUProtein-argininerhamnosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01306PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7810668945312 2 547.78443 1093.55431 NaN NaN NaN NaN NaN NaN NaN 126.57 1 121.95 121.45 122.45 -4.6172 0 0 0 0.1124 1 24955 24955 36.044 1.6425 1 40390 26107 26973 26989 39678 39678 0.011271799381120218 SEDIEIILY 9 Unmodified _SEDIEIILY_ 0 0 0 tr|U7SSL4|U7SSL4_FUSNUProtein-argininerhamnosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01306PE=3SV=1 tr|U7SSL4|U7SSL4_FUSNUProtein-argininerhamnosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01306PE=3SV=1 tr|U7SSL4|U7SSL4_FUSNUProtein-argininerhamnosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01306PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7819213867188 2 547.78443 1093.55431 NaN NaN NaN NaN NaN NaN NaN 100.17 1 95.878 95.378 96.378 -4.297 0 0 0 0.17788 1 19156 19156 8.9129 7.6626 1 40391 26107 26973 26989 39679 39679 0.011271799381120218 SEDIRCKCI 9 Unmodified _SEDIRCKCI_ 0 0 0 ENST00000495205.1_1_1:201114427-201123087:-|nuORF;ENSG00000116857|ENST00000367330|TMEM9 ENST00000495205.1_1_1:201114427-201123087:-|nuORF ENST00000495205.1_1_1:201114427-201123087:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2702026367188 2 533.754627 1065.4947 0.49674 0.00026514 1.6317 0.0008709 2.1284 0.001136 533.7556319182366 62.602 0.52549 59.186 58.769 59.295 -3.4158 21 14 2 0 0 0 0.74655 1 11687 11687 21.747 7.3413 1 641270 40392 2957 26974 26990 39680 39680 -0.03542737548605146 SEDKLPPPP 9 Unmodified _SEDKLPPPP_ 0 0 0 REV__ENSG00000146834|ENST00000310512|MEPCE REV__ENSG00000146834|ENST00000310512|MEPCE MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25762939453125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 20.04 1 20.04 19.54 20.54 0 0 0 0 0.23508 1 3300 3300 8.5933 0 1 + 40393 16903 26975 26991 39681 39681 0.012100613149868877 SEDKLPPPP 9 Unmodified _SEDKLPPPP_ 0 0 0 REV__ENSG00000146834|ENST00000310512|MEPCE REV__ENSG00000146834|ENST00000310512|MEPCE MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25726318359375 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 21.517 1 20.043 19.543 20.543 -1.4742 0 0 0 0.23508 1 3642 3642 8.5933 0 1 + 40394 16903 26975 26991 39682 39682 0.012100613149868877 SEDKLPPPP 9 Unmodified _SEDKLPPPP_ 0 0 0 REV__ENSG00000146834|ENST00000310512|MEPCE REV__ENSG00000146834|ENST00000310512|MEPCE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2592468261719 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 120.93 1 116.24 115.74 116.74 -4.6873 0 0 0 0.18755 1 23216 23216 0.40827 0 1 + 40395 16903 26975 26991 39683 39683 0.012100613149868877 SEDKLPPPP 9 Unmodified _SEDKLPPPP_ 0 0 0 REV__ENSG00000146834|ENST00000310512|MEPCE REV__ENSG00000146834|ENST00000310512|MEPCE MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.259033203125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 26.081 1 24.159 23.659 24.659 -1.9222 0 0 0 0.20155 1 4307 4307 23.148 5.0134 1 + 40396 16903 26975 26991 39684 39684 0.012100613149868877 SEDKRNHA 8 Unmodified _SEDKRNHA_ 0 0 0 ENSG00000080200|ENST00000389622|CRYBG3 ENSG00000080200|ENST00000389622|CRYBG3 ENSG00000080200|ENST00000389622|CRYBG3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7313537597656 2 478.730855 955.447156 NaN NaN NaN NaN NaN NaN NaN 55.363 1 52.225 51.725 52.725 -3.1377 0 0 0 0.21452 1 10275 10275 13.508 0 1 40397 1609 26976 26992 39685 39685 -0.032349324329061346 SEDLFPEA 8 Unmodified _SEDLFPEA_ 0 0 0 nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7474670410156 2 454.205815 906.397078 -0.32053 -0.00014559 0.43935 0.00019956 0.11882 5.3968E-05 454.2063011253949 53.434 0.77055 50.551 49.965 50.736 -2.8837 30 21 2 0 0 0 0.9455 1 10201 10201 11.64 11.64 1 1138200 40398 3638 26977 26993 39686 39686 -0.05986479881426021 SEDLFPEA 8 Unmodified _SEDLFPEA_ 0 0 0 nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7667541503906 2 454.205815 906.397078 NaN NaN NaN NaN NaN NaN NaN 138.57 1 133.72 133.22 134.22 -4.8444 0 0 0 0.10184 1 26706 26706 44.407 3.9584 1 40399 3638 26977 26993 39687 39687 -0.05986479881426021 SEDLGSLHPGA 11 Unmodified _SEDLGSLHPGA_ 0 0 0 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2742919921875 2 541.759278 1081.504 0.030736 1.6651E-05 -2.1335 -0.0011558 -2.1028 -0.0011392 541.7579970152465 45.605 0.31008 42.74 42.52 42.83 -2.8653 10 8 2 0 0 0 0.76241 1 8244 8244 22.736 4.5899 1 710750 40400 1475 26978 26994 39688 39688 -0.033489296670495605 SEDLGSLHPGA 11 Unmodified _SEDLGSLHPGA_ 0 0 0 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.265625 2 541.759278 1081.504 -0.020157 -1.092E-05 -0.74544 -0.00040385 -0.7656 -0.00041477 541.7589113559752 45.552 0.3149 42.686 42.504 42.818 -2.8665 12 8 2 0 0 0 0.76241 1 8234 8234 29.082 5.061 1 530170 40401 1475 26978 26994 39689 39689 -0.033489296670495605 SEDLISRFQ 9 Unmodified _SEDLISRFQ_ 0 0 0 ENST00000457242.1_1_3:187957906-188124050:+|nuORF ENST00000457242.1_1_3:187957906-188124050:+|nuORF ENST00000457242.1_1_3:187957906-188124050:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7728881835938 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 122 1 122 121.5 122.5 0 0 0 0 0.12545 1 24050 24050 2.8827 1.1908 1 40402 10036 26979 26995 39690 39690 -0.0026405277033063612 SEDNSLLEKG 10 Unmodified _SEDNSLLEKG_ 0 0 0 REV__ENST00000518315.5_1_8:18393255-18632402:-|nuORF REV__ENST00000518315.5_1_8:18393255-18632402:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7724609375 2 546.264393 1090.51423 0.070111 3.8299E-05 1.7237 0.00094162 1.7938 0.00097992 546.2651782796474 52.221 0.87646 49.133 48.777 49.654 -3.0876 63 24 4 0 0 0 0.53552 1 9539 9539 22.736 0 1 14205000 + 40403 17238 26980 26996 39691 39691 -0.02740366732473376 SEDNSLLEKG 10 Unmodified _SEDNSLLEKG_ 0 0 0 REV__ENST00000518315.5_1_8:18393255-18632402:-|nuORF REV__ENST00000518315.5_1_8:18393255-18632402:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.264393 1090.51423 0.021265 1.1616E-05 1.5442 0.00084355 1.5655 0.00085516 546.2651935108572 52.012 0.79031 49.13 48.697 49.487 -2.8824 -0.0042785 -0.00012898 NaN 22.736 58 22 4 NaN NaN NaN NaN 0 NaN NaN 0 13685000 + 40404 17238 26980 26996 -0.02740366732473376 SEDPKFREA 9 Unmodified _SEDPKFREA_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2171936035156 3 360.176972 1077.50909 0.63456 0.00022855 -0.46134 -0.00016617 0.17321 6.2387E-05 360.1767995255338 23.926 0.48456 22.373 22.117 22.602 -1.5532 40 13 4 0 0 0 0.066912 1 4154 4154 65.474 35.633 1 10199000 40405 1167 26981 26997 39692 39692 -0.026566258044113056 SEDPKKPPRP 10 Unmodified _SEDPKKPPRP_ 0 0 0 TEX2|p.S903Vfs*17|1|0.22|ENSG00000136478|chr17:64160898-64160899|-/C|frameshift_variant;ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2;TEX2|p.L796Cfs*29|1|0.25|ENSG00000136478|chr17:64188206-64188206|G/-|frameshift_variant TEX2|p.S903Vfs*17|1|0.22|ENSG00000136478|chr17:64160898-64160899|-/C|frameshift_variant TEX2|p.S903Vfs*17|1|0.22|ENSG00000136478|chr17:64160898-64160899|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.314208984375 2 575.814387 1149.61422 -0.53687 -0.00030914 0.74671 0.00042997 0.20985 0.00012083 575.815001000731 15.677 0.34819 14.462 14.271 14.619 -1.2159 13 9 2 0 0 0 0.63253 2 2412 2412;2416 17.443 6.5031 1 633450 40406 4013 26982 26998 39693;39694 39693 0.04539915391978866 SEDPLSKFTA 10 Unmodified _SEDPLSKFTA_ 0 0 0 tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7720336914062 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 99.819 1 95.522 95.022 96.022 -4.297 0 0 0 0.22543 1 19083 19083 19.362 2.249 1 40407 25996 26983 26999 39695 39695 -0.01386874864465426 SEDQSKLI 8 Unmodified _SEDQSKLI_ 0 0 0 REV__ENSG00000216937|ENST00000639629|CCDC7 REV__ENSG00000216937|ENST00000639629|CCDC7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23870849609375 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 66.886 1 66.886 66.386 67.386 0 0 0 0 0.22681 1 12924 12924 4.2837 1.6406 1 + 40408 19699 26984 27000 39696 39696 0.0033318441828669165 SEDQWAVQ 8 Unmodified _SEDQWAVQ_ 0 0 0 nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B;ENST00000534945.2_1_12:125834026-126068624:+|nuORF;TMEM132B|p.F483Lfs*2|1|0.26|ENSG00000139364|chr12:125644098-125644098|T/-|frameshift_variant;nc|ENSG00000139364|Q14DG7-2|TMEM132B nc|ENSG00000139364|Q14DG7|TMEM132B nc|ENSG00000139364|Q14DG7|TMEM132B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77093505859375 2 481.714339 961.414125 0.29194 0.00014063 -0.88364 -0.00042566 -0.5917 -0.00028503 481.71412816809294 28.708 0.27457 26.711 26.589 26.864 -1.9962 12 7 2 0 0 0 0.93477 1 4886 4886 18.135 10.225 1 342840 40409 4245 26985 27001 39697 39697 -0.06812559275613239 SEDRAFRV 8 Unmodified _SEDRAFRV_ 0 0 0 nc|ENSG00000132692|Q96GW7-2|BCAN;ENSG00000132692|ENST00000329117|BCAN nc|ENSG00000132692|Q96GW7-2|BCAN nc|ENSG00000132692|Q96GW7-2|BCAN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2535705566406 2 490.251423 978.488293 NaN NaN NaN NaN NaN NaN NaN 26.502 1 24.58 24.08 25.08 -1.9222 0 0 0 0.21323 1 4392 4392 14.582 1.0738 1 40410 3755 26986 27002 39698 39698 -0.001811713934330328 SEDSCLCCCC 10 Unmodified _SEDSCLCCCC_ 0 0 0 CD2AP-MDFI|1|fusion;ENSG00000112559|ENST00000230321|MDFI CD2AP-MDFI|1|fusion CD2AP-MDFI|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.270263671875 2 533.144348 1064.27414 NaN NaN NaN NaN NaN NaN NaN 123.64 1 119.06 118.56 119.56 -4.5757 0 0 0 2.8426 1 24373 24373 0 0 1 40411 445 26987 27003 39699 39699 -0.25542210254184283 SEDSCLCCCC 10 Unmodified _SEDSCLCCCC_ 0 0 0 CD2AP-MDFI|1|fusion;ENSG00000112559|ENST00000230321|MDFI CD2AP-MDFI|1|fusion CD2AP-MDFI|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2824096679688 2 533.144348 1064.27414 NaN NaN NaN NaN NaN NaN NaN 165.96 1 160.98 160.48 161.48 -4.9811 0 0 0 0.22588 1 32482 32482 0 0 1 40412 445 26987 27003 39700 39700 -0.25542210254184283 SEDTETSDY 9 Unmodified _SEDTETSDY_ 0 0 0 REV__nc|ENSG00000102780|Q86XP1-5|DGKH REV__nc|ENSG00000102780|Q86XP1-5|DGKH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6895751953125 2 523.693466 1045.37238 NaN NaN NaN NaN NaN NaN NaN 113.39 1 113.39 112.89 113.89 0 0 0 0 0.23508 1 22295 22295 12.532 3.1841 1 + 40413 14847 26988 27004 39701 39701 -0.14849204545453176 SEDTREQWPP 10 Unmodified _SEDTREQWPP_ 0 0 0 REV__SDHAF2|p.R77Efs*11|1|0.12|ENSG00000256591|chr11:61437812-61437813|-/A|frameshift_variant REV__SDHAF2|p.R77Efs*11|1|0.12|ENSG00000256591|chr11:61437812-61437813|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7799072265625 2 622.780741 1243.54693 0.22999 0.00014324 -0.11262 -7.0135E-05 0.11738 7.31E-05 622.7807227993687 90.861 0.70925 90.861 90.472 91.181 0 23 19 2 0 0 0 0.72406 1 17741 17741 8.7454 0.15213 1 1602700 + 40414 17983 26989 27005 39702 39702 -0.06510159609615584 SEDTVWIEYYY 11 Unmodified _SEDTVWIEYYY_ 0 0 0 ENSG00000108878|ENST00000226021|CACNG1 ENSG00000108878|ENST00000226021|CACNG1 ENSG00000108878|ENST00000226021|CACNG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2549743652344 3 489.882002 1466.62418 -0.31175 -0.00015272 -1.5628 -0.0007656 -1.8746 -0.00091832 489.8811326997558 16.259 0.2757 15.043 14.906 15.182 -1.2159 20 7 4 0 0 0 0.96192 1 2529 2529 2.8433 0.21205 1 817250 40415 2501 26990 27006 39703 39703 -0.09046986183943773 SEDVPSRAPH 10 Unmodified _SEDVPSRAPH_ 0 0 0 nc|ENSG00000149499|Q32P44-3|EML3 nc|ENSG00000149499|Q32P44-3|EML3 nc|ENSG00000149499|Q32P44-3|EML3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7897338867188 2 547.764894 1093.51524 0.13833 7.5772E-05 -0.93249 -0.00051078 -0.79416 -0.00043501 548.265736103102 85.891 0.7207 82.164 81.864 82.585 -3.727 43 19 3 0 0 0 0.86856 1 16866 16866 16.149 7.4037 1 4292300 40416 12381 26991 27007 39704 39704 -0.02778107572908084 SEDVRYVI 8 Unmodified _SEDVRYVI_ 0 0 0 ENSG00000189253|ENST00000329862|TRIM64B;ENSG00000204450|ENST00000533122|TRIM64 ENSG00000189253|ENST00000329862|TRIM64B ENSG00000189253|ENST00000329862|TRIM64B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2764587402344 2 490.756007 979.497461 -0.018988 -9.3183E-06 0.15225 7.4717E-05 0.13326 6.5399E-05 490.75607409008416 71.012 1.1313 67.763 67.354 68.485 -3.2492 62 31 4 0 0 0 0.50387 1 13919 13919 34.102 0 1 5268700 40417 7222 26992 27008 39705 39705 0.006891771722393969 SEDWSRAK 8 Unmodified _SEDWSRAK_ 0 0 0 REV__PROCA1|p.I159Sfs*14|1|0.48|ENSG00000167525|chr17:28704095-28704095|G/-|frameshift_variant REV__PROCA1|p.I159Sfs*14|1|0.48|ENSG00000167525|chr17:28704095-28704095|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25616455078125 2 489.735606 977.456658 1.1893 0.00058246 -1.1206 -0.0005488 0.068725 3.3657E-05 489.7349041835492 26.562 0.37486 24.78 24.552 24.926 -1.7821 20 10 3 0 0 0 0.81042 1 4665 4665 23.148 1.4018 1 1073600 + 40418 17935 26993 27009 39706 39706 -0.03297164147386411 SEEANLPR 8 Unmodified _SEEANLPR_ 0 0 0 ENST00000423924.1_1_9:99449445-99449544:+|nuORF ENST00000423924.1_1_9:99449445-99449544:+|nuORF ENST00000423924.1_1_9:99449445-99449544:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2286071777344 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 32.925 1 32.925 32.425 33.425 0 0 0 0 0.21486 1 5995 5995 11.64 0 1 40419 9695 26994 27010 39707 39707 -0.014885665216752386 SEEANLPR 8 Unmodified _SEEANLPR_ 0 0 0 ENST00000423924.1_1_9:99449445-99449544:+|nuORF ENST00000423924.1_1_9:99449445-99449544:+|nuORF ENST00000423924.1_1_9:99449445-99449544:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23077392578125 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 33.157 1 33.157 32.657 33.657 0 0 0 0 0.23025 1 6046 6046 1.7423 1.4908 1 40420 9695 26994 27010 39708 39708 -0.014885665216752386 SEEANLPR 8 Unmodified _SEEANLPR_ 0 0 0 ENST00000423924.1_1_9:99449445-99449544:+|nuORF ENST00000423924.1_1_9:99449445-99449544:+|nuORF ENST00000423924.1_1_9:99449445-99449544:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23077392578125 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 33.178 1 33.178 32.678 33.678 0 0 0 0 0.21486 1 6050 6050 11.64 1.5664 1 40421 9695 26994 27010 39709 39709 -0.014885665216752386 SEEANLPR 8 Unmodified _SEEANLPR_ 0 0 0 ENST00000423924.1_1_9:99449445-99449544:+|nuORF ENST00000423924.1_1_9:99449445-99449544:+|nuORF ENST00000423924.1_1_9:99449445-99449544:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2315368652344 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 35.238 1 32.986 32.486 33.486 -2.2527 0 0 0 0.21486 1 6203 6203 11.64 0 1 40422 9695 26994 27010 39710 39710 -0.014885665216752386 SEEARFQL 8 Unmodified _SEEARFQL_ 0 0 0 ENST00000587962.6_1_19:2233841-2234202:-|nuORF;ENSG00000104886|ENST00000326631|PLEKHJ1;ENST00000589791.5_1_19:2233841-2236647:-|nuORF ENST00000587962.6_1_19:2233841-2234202:-|nuORF ENST00000587962.6_1_19:2233841-2234202:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2652893066406 2 490.245806 978.47706 0.44744 0.00021936 1.8106 0.00088764 2.258 0.001107 490.2456321783181 76.662 0.70476 76.662 76.31 77.015 0 49 19 3 0 0 0 8448 1 14899 14899 29.841 20.297 1 4249100 40423 2264 26995 27011 39711 39711 -0.013039934875678227 SEEARFQL 8 Unmodified _SEEARFQL_ 0 0 0 ENST00000587962.6_1_19:2233841-2234202:-|nuORF;ENSG00000104886|ENST00000326631|PLEKHJ1;ENST00000589791.5_1_19:2233841-2236647:-|nuORF ENST00000587962.6_1_19:2233841-2234202:-|nuORF ENST00000587962.6_1_19:2233841-2234202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27606201171875 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 80.133 1 76.329 75.829 76.829 -3.8048 0 0 0 0.17841 1 15204 15204 32.305 2.0807 1 40424 2264 26995 27011 39712 39712 -0.013039934875678227 SEEAVRPHLG 10 Unmodified _SEEAVRPHLG_ 0 0 0 ENST00000607016.1_1_6:34248979-34249234:-|nuORF ENST00000607016.1_1_6:34248979-34249234:-|nuORF ENST00000607016.1_1_6:34248979-34249234:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7833251953125 2 547.783087 1093.55162 0.61209 0.00033529 -1.3112 -0.00071824 -0.69908 -0.00038295 547.7828230604343 21.172 0.17397 19.698 19.632 19.806 -1.4742 6 4 2 0 0 0 0.30531 1 3575 3575 0.20733 0 1 200490 40425 11750 26996 27012 39713 39713 0.008587693238041538 SEECYSDF 8 Unmodified _SEECYSDF_ 0 0 0 REV__nc|ENSG00000114670|Q8NG66-4|NEK11 REV__nc|ENSG00000114670|Q8NG66-4|NEK11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26690673828125 2 490.171115 978.327678 NaN NaN NaN NaN NaN NaN NaN 140.39 1 135.52 135.02 136.02 -4.8678 0 0 0 0.23749 1 27069 27069 0.12286 0 1 + 40426 15384 26997 27013 39714 39714 -0.16235306892497192 SEEDEGDSVE 10 Unmodified _SEEDEGDSVE_ 0 0 0 REV__ENSG00000099381|ENST00000262519|SETD1A REV__ENSG00000099381|ENST00000262519|SETD1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7777709960938 2 548.201655 1094.38876 0.42983 0.00023564 1.1685 0.00064057 1.5983 0.00087621 548.2024733511811 98.022 0.5145 98.022 97.676 98.191 0 18 14 2 0 0 0 0.87854 1 19143 19143 5.7319 0 1 1114800 + 40427 14637 26998 27014 39715 39715 -0.1546612337933766 SEEDYLYY 8 Unmodified _SEEDYLYY_ 0 0 0 REV__tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1 REV__tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2836303710938 2 541.221662 1080.42877 0.22639 0.00012253 0.49521 0.00026802 0.7216 0.00039055 541.2220396913444 16.969 0.2134 16.969 16.887 17.1 0 6 5 2 0 0 0 0.73426 1 2670 2670 9.3474 2.0582 1 346070 + 40428 24991 26999 27015 39716 39716 -0.10822531918142886 SEEDYLYY 8 Unmodified _SEEDYLYY_ 0 0 0 REV__tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1 REV__tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2836303710938 2 541.221662 1080.42877 0.22639 0.00012253 0.49521 0.00026802 0.7216 0.00039055 541.2220396913444 16.969 0.2134 16.969 16.887 17.1 0 6 5 2 0 0 0 1.0147 1 2670 2670 9.3474 2.0582 1 346070 + 40429 24991 26999 27015 39717 39717 -0.10822531918142886 SEEDYLYY 8 Unmodified _SEEDYLYY_ 0 0 0 REV__tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1 REV__tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.221662 1080.42877 0.123 6.6571E-05 1.6292 0.00088175 1.7522 0.00094832 541.22234887018 18.262 0.17115 16.951 16.831 17.002 -1.3109 -0.0089692 0.00015588 NaN 9.3474 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 245120 + 40430 24991 26999 27015 -0.10822531918142886 SEEEFLRTYA 10 Unmodified _SEEEFLRTYA_ 0 0 0 ENSG00000178585|ENST00000377263|CTNNBIP1 ENSG00000178585|ENST00000377263|CTNNBIP1 ENSG00000178585|ENST00000377263|CTNNBIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7716674804688 2 622.793318 1243.57208 0.76399 0.00047581 -0.38112 -0.00023736 0.38287 0.00023845 622.793063342801 103.26 0.61312 103.26 102.97 103.58 0 44 17 3 0 0 0 0.038608 3 20327 20262;20265;20327 85.764 35.64 1 5459100 40431 6583 27000 27016 39718;39719;39720 39720 -0.03996104807015399 SEEEFLRTYA 10 Unmodified _SEEEFLRTYA_ 0 0 0 ENSG00000178585|ENST00000377263|CTNNBIP1 ENSG00000178585|ENST00000377263|CTNNBIP1 ENSG00000178585|ENST00000377263|CTNNBIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7802124023438 2 622.793318 1243.57208 0.49807 0.00031019 -0.26731 -0.00016648 0.23075 0.00014371 622.7931045775724 107.76 0.66 103.44 103.1 103.76 -4.32 47 18 3 0 0 0 7.8209E-05 3 21222 21166;21222;21278 132.13 72.061 1 5287700 40432 6583 27000 27016 39721;39722;39723 39722 -0.03996104807015399 SEEEFLRTYA 10 Unmodified _SEEEFLRTYA_ 0 0 0 ENSG00000178585|ENST00000377263|CTNNBIP1 ENSG00000178585|ENST00000377263|CTNNBIP1 ENSG00000178585|ENST00000377263|CTNNBIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7697143554688 2 622.793318 1243.57208 0.16665 0.00010379 0.23838 0.00014846 0.40502 0.00025225 622.7934022181537 107.86 0.62712 103.44 103.12 103.75 -4.4121 45 17 3 0 0 0 0.023807 2 20658 20658;20725 84.522 46.825 1 4949200 40433 6583 27000 27016 39724;39725 39724 -0.03996104807015399 SEEEFLRTYA 10 Unmodified _SEEEFLRTYA_ 0 0 0 ENSG00000178585|ENST00000377263|CTNNBIP1 ENSG00000178585|ENST00000377263|CTNNBIP1 ENSG00000178585|ENST00000377263|CTNNBIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7576904296875 2 622.793318 1243.57208 0.89833 0.00055947 -0.49162 -0.00030618 0.40671 0.00025329 622.7930156799965 107.54 0.69276 103.41 103.04 103.74 -4.135 46 19 3 0 0 0 0.016887 1 20704 20704 97.741 49.992 1 5610500 40434 6583 27000 27016 39726 39726 -0.03996104807015399 SEEEKLNL 8 Unmodified _SEEEKLNL_ 0 0 0 nc|ENSG00000064933|P54277-4|PMS1;nc|ENSG00000064933|P54277-2|PMS1 nc|ENSG00000064933|P54277-4|PMS1 nc|ENSG00000064933|P54277-4|PMS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2457275390625 2 481.245472 960.476391 0.19583 9.4241E-05 1.0044 0.00048338 1.2003 0.00057762 481.2459427892339 35.093 0.55816 32.84 32.532 33.09 -2.2527 32 15 3 0 0 0 0.64512 1 6131 6131 19.257 0 1 2830400 40435 12225 27001 27017 39727 39727 -0.0054283292729451205 SEEELSYTK 9 Unmodified _SEEELSYTK_ 0 0 0 REV__ENSG00000183559|ENST00000329446|C10orf120 REV__ENSG00000183559|ENST00000329446|C10orf120 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.782470703125 2 543.253494 1084.49243 0.15722 8.5413E-05 -0.088112 -4.7867E-05 0.069113 3.7546E-05 543.2535902408341 87.317 0.5995 83.59 83.149 83.749 -3.727 22 16 2 0 0 0 0.55979 1 17028 17028 15.847 0 1 1498500 + 40436 18842 27002 27018 39728 39728 -0.0464317148102964 SEEELSYTK 9 Unmodified _SEEELSYTK_ 0 0 0 REV__ENSG00000183559|ENST00000329446|C10orf120 REV__ENSG00000183559|ENST00000329446|C10orf120 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.253494 1084.49243 0.15722 8.5413E-05 -0.088112 -4.7867E-05 0.069113 3.7546E-05 543.2535902408341 87.317 0.5995 83.59 83.149 83.749 -3.727 0.020928 -0.00018085 NaN 15.847 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1498500 + 40437 18842 27002 27018 -0.0464317148102964 SEEELSYTK 9 Unmodified _SEEELSYTK_ 0 0 0 REV__ENSG00000183559|ENST00000329446|C10orf120 REV__ENSG00000183559|ENST00000329446|C10orf120 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.253494 1084.49243 0.22288 0.00012108 0.66109 0.00035914 0.88397 0.00048022 543.7552961643657 87.277 0.49497 83.548 83.398 83.893 -3.7289 -0.020928 0.00063316 NaN 15.847 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 919140 + 40438 18842 27002 27018 -0.0464317148102964 SEEEMHAE 8 Unmodified _SEEEMHAE_ 0 0 0 nc|ENSG00000155158|Q5VTQ0-5|TTC39B;ENST00000505732.5_1_9:15186859-15307321:-|nuORF;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B nc|ENSG00000155158|Q5VTQ0-5|TTC39B nc|ENSG00000155158|Q5VTQ0-5|TTC39B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7783508300781 2 481.182014 960.349476 0.040305 1.9394E-05 0.95314 0.00045863 0.99344 0.00047803 481.18409167180874 60.554 0.75867 57.62 57.238 57.996 -2.9333 69 21 4 0 0 0 0.74718 1 11615 11615 7.9102 0 1 5327900 40439 5037 27003 27019 39729 39729 -0.13228502143920196 SEEEMHAE 8 Unmodified _SEEEMHAE_ 0 0 0 nc|ENSG00000155158|Q5VTQ0-5|TTC39B;ENST00000505732.5_1_9:15186859-15307321:-|nuORF;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B nc|ENSG00000155158|Q5VTQ0-5|TTC39B nc|ENSG00000155158|Q5VTQ0-5|TTC39B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7786560058594 2 481.182014 960.349476 0.12919 6.2166E-05 -0.9785 -0.00047083 -0.8493 -0.00040867 481.184063342034 60.988 0.83402 57.618 57.203 58.037 -3.3694 104 23 6 0 0 0 0.93477 1 11351 11351 18.135 0 1 9982700 40440 5037 27003 27019 39730 39730 -0.13228502143920196 SEEESDEIV 9 Unmodified _SEEESDEIV_ 0 0 0 nc|ENSG00000163618|Q9ULU8-2|CADPS;nc|ENSG00000163618|Q9ULU8-3|CADPS;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS;nc|ENSG00000163618|Q9ULU8-5|CADPS;CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant nc|ENSG00000163618|Q9ULU8-2|CADPS nc|ENSG00000163618|Q9ULU8-2|CADPS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.15411376953125 3 346.148748 1035.42441 NaN NaN NaN NaN NaN NaN NaN 79.953 1 76.442 75.942 76.942 -3.5102 0 0 0 0.19682 1 15614 15614 0.12781 0 1 40441 5447 27004 27020 39731 39731 -0.09188041131710634 SEEFQINL 8 Unmodified _SEEFQINL_ 0 0 0 REV__ENSG00000170871|ENST00000307659|KIAA0232 REV__ENSG00000170871|ENST00000307659|KIAA0232 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26983642578125 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 31.522 1 31.522 31.022 32.022 0 0 0 0 0.17894 1 5696 5696 32.117 0 1 + 40442 18184 27005 27021 39732 39732 -0.024268155817139814 SEEGESPPP 9 Unmodified _SEEGESPPP_ 0 0 0 REV__nc|ENSG00000166501|P05771|PRKCB REV__nc|ENSG00000166501|P05771|PRKCB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.134662 927.382156 NaN NaN NaN NaN NaN NaN NaN 53.586 1 50.499 49.999 50.999 -3.0876 0 0 0 0.19656 1 9865 9865 0.40827 0 1 + 40443 17856 27006 27022 39733 39733 -0.08443971749420598 SEEHDTDP 8 Unmodified _SEEHDTDP_ 0 0 0 REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1 REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23956298828125 2 465.177786 928.34102 0.51508 0.0002396 0.26798 0.00012466 0.78306 0.00036426 465.17792343843115 29.748 0.5552 27.631 27.386 27.941 -2.1167 25 15 2 0 0 0 0.58903 1 5330 5330 23.148 3.7094 1 2035600 + 40444 24713 27007 27023 39734 39734 -0.12601732788891695 SEEHDTDP 8 Unmodified _SEEHDTDP_ 0 0 0 REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1 REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25360107421875 2 465.177786 928.34102 -0.31891 -0.00014835 -4.2088 -0.0019578 -4.5277 -0.0021062 465.1764994623756 19.859 0.38495 18.534 18.381 18.766 -1.3251 19 10 3 0 0 0 1.0011 1 3036 3036 4.3292 2.2695 1 503670 + 40445 24713 27007 27023 39735 39735 -0.12601732788891695 SEEHDTDP 8 Unmodified _SEEHDTDP_ 0 0 0 REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1 REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2389221191406 2 465.177786 928.34102 0.5143 0.00023924 0.43252 0.0002012 0.94682 0.00044044 465.17790275945634 29.746 0.48799 27.671 27.413 27.901 -2.0743 30 13 3 0 0 0 0.93477 1 5016 5016 12.532 3.9383 1 1750000 + 40446 24713 27007 27023 39736 39736 -0.12601732788891695 SEEHDTDP 8 Unmodified _SEEHDTDP_ 0 0 0 REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1 REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.177786 928.34102 0.18168 8.4514E-05 0.57982 0.00026972 0.7615 0.00035423 465.1780658209167 27.842 0.58293 27.842 27.597 28.18 0 0.12758 9.3602E-05 NaN 23.148 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2346500 + 40447 24713 27007 27023 -0.12601732788891695 SEEHDTDP 8 Unmodified _SEEHDTDP_ 0 0 0 REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1 REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.177786 928.34102 0.30958 0.00014401 0.66072 0.00030735 0.9703 0.00045136 465.17807325685243 29.607 0.62832 27.714 27.439 28.067 -1.8928 -0.0006706 0.00016887 NaN 23.148 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2433700 + 40448 24713 27007 27023 -0.12601732788891695 SEEIITPVY 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SEEIITPVY_ 1 0 0 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7683715820312 2 546.776605 1091.53866 0.33384 0.00018254 0.010069 5.5055E-06 0.34391 0.00018804 546.7765991195616 145.51 1.4976 145.51 144.82 146.32 0 100 42 3 0 0 0 0.042631 5 29033 29033;29097;29105;29129;29153 74.423 52.676 1 22086000 40449 1105 27008 27024 39737;39738;39739;39740;39741 39737 -0.00345106578947707 SEEIITPVY 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SEEIITPVY_ 1 0 0 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7796630859375 2 546.776605 1091.53866 0.31168 0.00017042 0.32024 0.0001751 0.63192 0.00034552 546.776704699159 151.03 1.6246 146.27 145.76 147.39 -4.7524 111 45 3 0 0 0 0.026587 7 29980 29938;29980;30031;30074;30124;30129;30153 85.357 50.402 1 19846000 40450 1105 27008 27024 39742;39743;39744;39745;39746;39747;39748 39743 -0.00345106578947707 SEEIITPVY 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SEEIITPVY_ 1 0 0 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.791748046875 2 546.776605 1091.53866 0.16303 8.9142E-05 0.48548 0.00026545 0.64851 0.00035459 546.7767815985726 151.53 2.0183 146.29 145.69 147.71 -5.2365 118 56 3 0 0 0 0.060164 4 29379 29379;29400;29413;29426 67.344 50.402 1 16869000 40451 1105 27008 27024 39749;39750;39751;39752 39749 -0.00345106578947707 SEEIITPVY 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SEEIITPVY_ 1 0 0 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7928466796875 2 546.776605 1091.53866 0.44335 0.00024241 0.17657 9.6545E-05 0.61992 0.00033896 546.7766256633129 151.4 2.1193 146.23 145.61 147.73 -5.1759 147 59 3 0 0 0 0.060164 5 29301 29301;29308;29350;29363;29455 67.344 50.402 1 24430000 40452 1105 27008 27024 39753;39754;39755;39756;39757 39753 -0.00345106578947707 SEEIKMSEAK 10 Unmodified _SEEIKMSEAK_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3179931640625 2 576.284271 1150.55399 NaN NaN NaN NaN NaN NaN NaN 147.58 1 142.52 142.02 143.02 -5.0595 0 0 0 0.22588 1 28573 28573 8.7454 1.1365 1 40453 5053 27009 27025 39758 39758 -0.01526563053425889 SEEKAMDISA 10 Unmodified _SEEKAMDISA_ 0 0 0 CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.T718Pfs*5|1|0.11|ENSG00000143702|chr1:243165808-243165808|T/-|frameshift_variant;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;CEP170|p.N481Ifs*26|1|0.13|ENSG00000143702|chr1:243185903-243185903|T/-|frameshift_variant;CEP170|p.N204Tfs*11|1|0.26|ENSG00000143702|chr1:243199080-243199080|T/-|frameshift_variant;CEP170|p.A226Qfs*31|1|0.08|ENSG00000143702|chr1:243191450-243191451|-/CATTG|frameshift_variant;ENST00000502249.6_1_4:119388789-119401509:+|nuORF CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2789916992188 2 540.747521 1079.48049 0.58863 0.0003183 -0.45939 -0.00024841 0.12924 6.9886E-05 540.7473867322395 45.052 0.67197 45.052 44.706 45.378 0 29 18 2 0 0 0 0.2423 1 8476 8476 46.022 22.233 1 3045100 40454 490 27010 27026 39759 39759 -0.05607111495874051 SEEKLISKF 9 Unmodified _SEEKLISKF_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.273681640625 2 540.800414 1079.58628 0.17386 9.4024E-05 -0.26943 -0.00014571 -0.095565 -5.1682E-05 540.8002915729563 71.471 0.459 71.471 71.248 71.707 0 20 12 2 0 0 0 0.11773 2 13879 13876;13879 49.742 13.236 1 2555700 40455 217 27011 27027 39760;39761 39761 0.049665924119153715 SEEKLISKF 9 Unmodified _SEEKLISKF_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2595825195312 2 540.800414 1079.58628 0.1252 6.7706E-05 0.044666 2.4155E-05 0.16986 9.1861E-05 540.8005243143143 74.506 0.60513 71.142 70.882 71.487 -3.3643 26 16 2 0 0 0 0.070861 1 14523 14523 85.764 22.537 1 2316400 40456 217 27011 27027 39762 39762 0.049665924119153715 SEEKLISKF 9 Unmodified _SEEKLISKF_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2594604492188 2 540.800414 1079.58628 0.40317 0.00021804 -0.29311 -0.00015851 0.11006 5.9522E-05 540.8002328545429 74.688 0.41821 71.094 70.954 71.372 -3.594 26 11 3 0 0 0 0.11518 1 14203 14203 73.196 17.962 1 1660600 40457 217 27011 27027 39763 39763 0.049665924119153715 SEEKPVPAA 9 Unmodified _SEEKPVPAA_ 0 0 0 nc|ENSG00000189159|Q9UK76-3|JPT1;ENSG00000189159|ENST00000409753|JPT1 nc|ENSG00000189159|Q9UK76-3|JPT1 nc|ENSG00000189159|Q9UK76-3|JPT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2450866699219 2 464.242732 926.470912 0.14457 6.7114E-05 -0.34172 -0.00015864 -0.19715 -9.1525E-05 464.2426775631921 21.687 1.6962 21.687 21.33 23.026 0 116 48 4 0 0 0 0.10537 7 3652 3611;3622;3652;3653;3699;3701;3713 54.068 24.228 1 305380000 40458 7218 27012 27028 39764;39765;39766;39767;39768;39769;39770 39766 0.0047348828089752715 SEEKPVPAA 9 Unmodified _SEEKPVPAA_ 0 0 0 nc|ENSG00000189159|Q9UK76-3|JPT1;ENSG00000189159|ENST00000409753|JPT1 nc|ENSG00000189159|Q9UK76-3|JPT1 nc|ENSG00000189159|Q9UK76-3|JPT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24481201171875 2 464.242732 926.470912 0.69353 0.00032197 -0.88827 -0.00041237 -0.19473 -9.0404E-05 464.24246147524565 23.148 1.1578 21.595 21.234 22.392 -1.5532 96 32 5 0 0 0 0.069179 4 3992 3992;3993;4037;4038 60.47 30.629 1 213070000 40459 7218 27012 27028 39771;39772;39773;39774 39771 0.0047348828089752715 SEEKPVPAA 9 Unmodified _SEEKPVPAA_ 0 0 0 nc|ENSG00000189159|Q9UK76-3|JPT1;ENSG00000189159|ENST00000409753|JPT1 nc|ENSG00000189159|Q9UK76-3|JPT1 nc|ENSG00000189159|Q9UK76-3|JPT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2451171875 2 464.242732 926.470912 -0.11673 -5.419E-05 -0.20932 -9.7177E-05 -0.32605 -0.00015137 464.24268189866245 23.049 1.3628 21.595 21.26 22.622 -1.4535 113 38 5 0 0 0 0.10537 6 3701 3689;3701;3702;3746;3747;3762 54.068 33.615 1 197210000 40460 7218 27012 27028 39775;39776;39777;39778;39779;39780 39776 0.0047348828089752715 SEEKPVPAA 9 Unmodified _SEEKPVPAA_ 0 0 0 nc|ENSG00000189159|Q9UK76-3|JPT1;ENSG00000189159|ENST00000409753|JPT1 nc|ENSG00000189159|Q9UK76-3|JPT1 nc|ENSG00000189159|Q9UK76-3|JPT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2451477050781 2 464.242732 926.470912 -0.43708 -0.00020291 0.16054 7.4529E-05 -0.27654 -0.00012838 464.24284583234964 23.318 1.8566 21.53 21.189 23.045 -1.7886 134 53 5 0 0 0 0.091132 6 3755 3712;3755;3758;3796;3807;3809 47.987 45.105 1 137720000 40461 7218 27012 27028 39781;39782;39783;39784;39785;39786 39782 0.0047348828089752715 SEEKSSKTW 9 Unmodified _SEEKSSKTW_ 0 0 0 REV__ENSG00000155008|ENST00000373173|APOOL REV__ENSG00000155008|ENST00000373173|APOOL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2626342773438 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 104.11 1 104.11 103.61 104.61 0 0 0 0 0.21844 1 20460 20460 18.146 0 1 + 40462 17205 27013 27029 39787 39787 -0.028280455242793323 SEELAQVF 8 Unmodified _SEELAQVF_ 0 0 0 ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant;nc|ENSG00000130023|Q5T6L9-2|ERMARD;nc|ENSG00000130023|Q5T6L9-3|ERMARD;ENSG00000130023|ENST00000366773|ERMARD;nc|ENSG00000130023|Q5T6L9-4|ERMARD ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.238525390625 2 461.729458 921.444362 0.16891 7.799E-05 0.38258 0.00017665 0.55148 0.00025464 461.72954498300896 130.06 0.60077 125.29 124.89 125.5 -4.7725 29 16 2 0 0 0 0.73589 1 25018 25018 19.391 13.199 1 1586100 40463 3577 27014 27030 39788 39788 -0.019502006104175962 SEELAQVF 8 Unmodified _SEELAQVF_ 0 0 0 ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant;nc|ENSG00000130023|Q5T6L9-2|ERMARD;nc|ENSG00000130023|Q5T6L9-3|ERMARD;ENSG00000130023|ENST00000366773|ERMARD;nc|ENSG00000130023|Q5T6L9-4|ERMARD ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.729458 921.444362 -0.06792 -3.1361E-05 0.4338 0.0002003 0.36588 0.00016894 461.7296439794559 129.94 0.74678 125.3 124.87 125.62 -4.6359 0.0083309 -2.8057E-05 NaN 19.391 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1422900 40464 3577 27014 27030 -0.019502006104175962 SEELAQVF 8 Unmodified _SEELAQVF_ 0 0 0 ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant;nc|ENSG00000130023|Q5T6L9-2|ERMARD;nc|ENSG00000130023|Q5T6L9-3|ERMARD;ENSG00000130023|ENST00000366773|ERMARD;nc|ENSG00000130023|Q5T6L9-4|ERMARD ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.729458 921.444362 -0.0080979 -3.739E-06 0.57048 0.00026341 0.56238 0.00025967 461.7295913786468 130.13 0.6676 125.29 124.9 125.57 -4.8355 -0.0043715 9.8165E-05 NaN 19.391 34 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1882200 40465 3577 27014 27030 -0.019502006104175962 SEELETLPE 9 Unmodified _SEELETLPE_ 0 0 0 REV__ENSG00000189171|ENST00000476133|S100A13 REV__ENSG00000189171|ENST00000476133|S100A13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6967163085938 2 523.748044 1045.48154 NaN NaN NaN NaN NaN NaN NaN 119.45 1 114.81 114.31 115.31 -4.645 0 0 0 0.22962 1 22925 22925 14.838 1.3304 1 + 40466 19198 27015 27031 39789 39789 -0.039385738553392 SEELGDPPAK 10 Unmodified _SEELGDPPAK_ 0 0 0 REV__nc|ENSG00000118004|Q9BWP8-9|COLEC11 REV__nc|ENSG00000118004|Q9BWP8-9|COLEC11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2571411132812 2 521.756204 1041.49785 0.54507 0.00028439 -0.70925 -0.00037005 -0.16418 -8.5663E-05 521.7558204841423 47.805 1.4403 47.805 46.873 48.313 0 54 40 2 0 0 0 0.6817 1 9002 9002 13.042 0 1 1285900 + 40467 24013 27016 27032 39790 39790 -0.021234478985888927 SEELGDPPAK 10 Unmodified _SEELGDPPAK_ 0 0 0 REV__nc|ENSG00000118004|Q9BWP8-9|COLEC11 REV__nc|ENSG00000118004|Q9BWP8-9|COLEC11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2566528320312 2 521.756204 1041.49785 -0.014834 -7.7399E-06 -0.35227 -0.0001838 -0.3671 -0.00019154 521.7560808321588 50.782 1.5546 47.731 46.862 48.417 -3.0517 70 44 2 0 0 0 0.61964 1 9301 9301 18.146 2.8979 1 1695500 + 40468 24013 27016 27032 39791 39791 -0.021234478985888927 SEELLLEVN 9 Unmodified _SEELLLEVN_ 0 0 0 MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant;nc|ENSG00000187391|Q86UL8-2|MAGI2;ENSG00000187391|ENST00000354212|MAGI2;MAGI2|p.D644Vfs*8|1|0.05|ENSG00000187391|chr7:78256059-78256060|-/AAGACAAACA|frameshift_variant MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant MAGI2|p.P1095Rfs*80|1|0.48|ENSG00000187391|chr7:78127336-78127336|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6967163085938 2 523.274229 1044.53391 -0.059322 -3.1041E-05 0.58054 0.00030378 0.52122 0.00027274 523.2744953483558 119.48 0.63441 114.84 114.39 115.02 -4.645 23 17 2 0 0 0 0.58699 1 22925 22925 25.399 3.6527 1 1839800 40469 7106 27017 27033 39792 39792 0.01342009278300793 SEELLQPY 8 Unmodified _SEELLQPY_ 0 0 0 nc|ENSG00000214694|A8MVX0|ARHGEF33;ENSG00000214694|ENST00000409978|ARHGEF33 nc|ENSG00000214694|A8MVX0|ARHGEF33 nc|ENSG00000214694|A8MVX0|ARHGEF33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2623291015625 2 489.742565 977.470577 0.34582 0.00016936 -0.35764 -0.00017515 -0.011819 -5.7882E-06 489.74252713001124 121.97 0.49709 117.42 117.07 117.56 -4.5476 19 13 2 0 0 0 0.64227 1 24028 24028 19.439 2.4967 1 920470 40470 7730 27018 27034 39793 39793 -0.01905931438955122 SEELLRKGF 9 Unmodified _SEELLRKGF_ 0 0 0 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2161865234375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 74.716 1 71.352 70.852 71.852 -3.3643 0 0 0 0.23508 1 14577 14577 5.2969 0.39987 1 40471 5656 27019 27035 39794 39794 0.0461712798901317 SEELLRKGF 9 Unmodified _SEELLRKGF_ 0 0 0 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 74.738 1 71.374 70.874 71.874 -3.3643 0 0 0 0.23508 1 14583 14583 5.2969 0.39987 1 40472 5656 27019 27035 39795 39795 0.0461712798901317 SEELLRKGF 9 Unmodified _SEELLRKGF_ 0 0 0 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 74.691 1 71.015 70.515 71.515 -3.6764 0 0 0 0.23508 1 14119 14119 5.2969 0.39987 1 40473 5656 27019 27035 39796 39796 0.0461712798901317 SEELLRKGF 9 Unmodified _SEELLRKGF_ 0 0 0 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013244628906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 74.544 1 70.95 70.45 71.45 -3.594 0 0 0 0.23508 1 14159 14159 2.7352 0 1 40474 5656 27019 27035 39797 39797 0.0461712798901317 SEELRDAT 8 Unmodified _SEELRDAT_ 0 0 0 ENSG00000109171|ENST00000264313|SLAIN2 ENSG00000109171|ENST00000264313|SLAIN2 ENSG00000109171|ENST00000264313|SLAIN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2353210449219 2 460.719621 919.42469 NaN NaN NaN NaN NaN NaN NaN 25.486 1 25.486 24.986 25.986 0 0 0 0 0.21486 1 4424 4424 9.3474 0 1 40475 2519 27020 27036 39798 39798 -0.038245766211957744 SEELTVTNA 9 Unmodified _SEELTVTNA_ 0 0 0 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78704833984375 2 482.235104 962.455655 -0.055898 -2.6956E-05 0.79115 0.00038152 0.73526 0.00035457 482.23557544773536 54.684 0.7688 54.684 54.354 55.122 0 35 21 2 0 0 0 0.13686 1 10406 10406 61.357 29.052 1 1696100 40476 7831 27021 27037 39799 39799 -0.027074233069583897 SEELTVTNA 9 Unmodified _SEELTVTNA_ 0 0 0 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7858581542969 2 482.235104 962.455655 -0.068103 -3.2842E-05 1.2447 0.00060023 1.1766 0.00056739 482.2357686739363 57.367 0.77784 54.473 54.166 54.944 -2.8944 32 21 2 0 0 0 0.58699 1 11047 11047 32.305 11.852 1 1791800 40477 7831 27021 27037 39800 39800 -0.027074233069583897 SEELTVTNA 9 Unmodified _SEELTVTNA_ 0 0 0 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76556396484375 2 482.235104 962.455655 0.1184 5.7097E-05 0.58771 0.00028342 0.70611 0.00034051 482.23551738291104 57.823 0.9532 54.571 54.147 55.1 -3.2517 34 26 2 0 0 0 0.32263 1 10730 10730 46.021 25.567 1 1468600 40478 7831 27021 27037 39801 39801 -0.027074233069583897 SEENSITLS 9 Unmodified _SEENSITLS_ 0 0 0 REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2624206542969 2 490.232561 978.45057 0.18393 9.0167E-05 0.13085 6.4147E-05 0.31478 0.00015431 490.2326044677955 34.421 0.78304 34.421 34.212 34.995 0 47 22 3 0 0 0 0.47479 1 6325 6325 30.637 6.616 1 1116400 + 40479 17101 27022 27038 39802 39802 -0.03951727169555852 SEENSITLS 9 Unmodified _SEENSITLS_ 0 0 0 REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27398681640625 2 490.232561 978.45057 -0.30035 -0.00014724 0.77687 0.00038085 0.47652 0.0002336 490.2328696654196 36.769 1.1161 34.3 33.869 34.985 -2.4688 66 31 3 0 0 0 0.42844 1 6736 6736 24.021 0.87215 1 1486800 + 40480 17101 27022 27038 39803 39803 -0.03951727169555852 SEENSITLS 9 Unmodified _SEENSITLS_ 0 0 0 REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2579345703125 2 490.232561 978.45057 0.013473 6.6047E-06 0.61762 0.00030278 0.63109 0.00030938 490.2328318243763 36.867 1.0232 34.53 34.027 35.05 -2.3375 57 28 3 0 0 0 0.69192 1 6543 6543 20.454 0 1 850370 + 40481 17101 27022 27038 39804 39804 -0.03951727169555852 SEEPETPAA 9 Unmodified _SEEPETPAA_ 0 0 0 ENSG00000174109|ENST00000442039|UQCC4;ENST00000563974.1_2_16:1470249-1470717:-|nuORF ENSG00000174109|ENST00000442039|UQCC4 ENSG00000174109|ENST00000442039|UQCC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.5104370117188 1 930.405083 929.397806 0.79731 0.00074182 -0.22186 -0.00020642 0.57545 0.0005354 930.4048015562396 29.275 0.98518 27.319 26.81 27.795 -1.9561 46 27 2 0 0 0 0.023387 1 5176 5176 88.904 52.859 1 1758300 40482 6328 27023 27039 39805 39805 -0.06971685232383606 SEEPETPAA 9 Unmodified _SEEPETPAA_ 0 0 0 ENSG00000174109|ENST00000442039|UQCC4;ENST00000563974.1_2_16:1470249-1470717:-|nuORF ENSG00000174109|ENST00000442039|UQCC4 ENSG00000174109|ENST00000442039|UQCC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2574768066406 2 465.70618 929.397806 0.59061 0.00027505 -0.55425 -0.00025812 0.036363 1.6934E-05 465.70588519108145 29.211 1.4679 27.255 26.569 28.037 -1.9561 112 41 4 0 0 0 0.035225 1 5171 5171 88.904 60.417 1 8679200 40483 6328 27023 27039 39806 39806 -0.06971685232383606 SEEPETPAA 9 Unmodified _SEEPETPAA_ 0 0 0 ENSG00000174109|ENST00000442039|UQCC4;ENST00000563974.1_2_16:1470249-1470717:-|nuORF ENSG00000174109|ENST00000442039|UQCC4 ENSG00000174109|ENST00000442039|UQCC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2568664550781 2 465.70618 929.397806 0.28656 0.00013346 -0.20409 -9.5047E-05 0.082473 3.8408E-05 465.70602046654034 29.192 1.5044 27.299 26.563 28.067 -1.8928 118 42 4 0 0 0 0.07121 1 4929 4929 78.149 47.513 1 9489100 40484 6328 27023 27039 39807 39807 -0.06971685232383606 SEEPETPAA 9 Unmodified _SEEPETPAA_ 0 0 0 ENSG00000174109|ENST00000442039|UQCC4;ENST00000563974.1_2_16:1470249-1470717:-|nuORF ENSG00000174109|ENST00000442039|UQCC4 ENSG00000174109|ENST00000442039|UQCC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25341796875 2 465.70618 929.397806 0.45684 0.00021275 -0.43266 -0.00020149 0.024171 1.1257E-05 465.7059043658568 29.183 1.4936 27.186 26.625 28.118 -1.9962 120 42 4 0 0 0 0.029966 1 4908 4908 96.285 54.19 1 6877800 40485 6328 27023 27039 39808 39808 -0.06971685232383606 SEEPETPAA 9 Unmodified _SEEPETPAA_ 0 0 0 ENSG00000174109|ENST00000442039|UQCC4;ENST00000563974.1_2_16:1470249-1470717:-|nuORF ENSG00000174109|ENST00000442039|UQCC4 ENSG00000174109|ENST00000442039|UQCC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 930.405083 929.397806 0.58679 0.00054595 -0.11202 -0.00010422 0.47477 0.00044173 930.4050272402271 27.402 0.96334 27.402 26.907 27.87 0 0.016674 -1.8034E-05 NaN 88.904 49 27 3 NaN NaN NaN NaN 0 NaN NaN 0 1792500 40486 6328 27023 27039 -0.06971685232383606 SEEPETPAA 9 Unmodified _SEEPETPAA_ 0 0 0 ENSG00000174109|ENST00000442039|UQCC4;ENST00000563974.1_2_16:1470249-1470717:-|nuORF ENSG00000174109|ENST00000442039|UQCC4 ENSG00000174109|ENST00000442039|UQCC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 930.405083 929.397806 0.56031 0.00052132 0.025973 2.4166E-05 0.58629 0.00054548 930.4050165733876 29.349 0.9422 27.456 26.843 27.785 -1.8928 0.070731 0.00011035 NaN 88.904 44 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1711700 40487 6328 27023 27039 -0.06971685232383606 SEEPETPAA 9 Unmodified _SEEPETPAA_ 0 0 0 ENSG00000174109|ENST00000442039|UQCC4;ENST00000563974.1_2_16:1470249-1470717:-|nuORF ENSG00000174109|ENST00000442039|UQCC4 ENSG00000174109|ENST00000442039|UQCC4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 930.405083 929.397806 0.59404 0.00055269 -0.062637 -5.8278E-05 0.5314 0.00049442 930.4049631731386 29.439 1.0087 27.365 26.751 27.76 -2.0743 -0.020792 2.7909E-05 NaN 88.904 61 28 3 NaN NaN NaN NaN 0 NaN NaN 0 1526100 40488 6328 27023 27039 -0.06971685232383606 SEEPLGRQ 8 Unmodified _SEEPLGRQ_ 0 0 0 nc|ENSG00000135439|Q99490-2|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2 nc|ENSG00000135439|Q99490-2|AGAP2 nc|ENSG00000135439|Q99490-2|AGAP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2283630371094 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 34.995 1 32.742 32.242 33.242 -2.2527 0 0 0 0.21486 1 6151 6151 11.64 0 1 40489 12339 27024 27040 39809 39809 -0.0148856652166387 SEEPPPPPPP 10 Unmodified _SEEPPPPPPP_ 0 0 0 REV__DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant REV__DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2732543945312 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 40.755 1 38.265 37.765 38.765 -2.4896 0 0 0 0.22535 1 7302 7302 20.454 3.5113 1 + 40490 13672 27025 27041 39810 39810 -0.022422425476179342 SEEPVMEKP 9 Unmodified _SEEPVMEKP_ 0 0 0 ENST00000394231.7_1_17:37885815-37885993:-|nuORF ENST00000394231.7_1_17:37885815-37885993:-|nuORF ENST00000394231.7_1_17:37885815-37885993:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6912841796875 2 523.247157 1044.47976 0.34931 0.00018277 -0.47769 -0.00024995 -0.12838 -6.7176E-05 523.2468597347596 40.374 0.98974 40.374 39.859 40.849 0 52 27 2 0 0 0 0.30618 1 7407 7407 31.268 7.2478 1 6486500 40491 9407 27026 27042 39811 39811 -0.04069906144900415 SEEPVMEKP 9 Unmodified _SEEPVMEKP_ 0 0 0 ENST00000394231.7_1_17:37885815-37885993:-|nuORF ENST00000394231.7_1_17:37885815-37885993:-|nuORF ENST00000394231.7_1_17:37885815-37885993:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6760864257812 2 523.247157 1044.47976 -0.28878 -0.0001511 0.093716 4.9037E-05 -0.19506 -0.00010206 523.2471758385398 43.283 1.4478 40.564 39.914 41.362 -2.7191 72 40 2 0 0 0 0.0024928 3 8082 8082;8176;8180 117.76 61.584 1 15446000 40492 9407 27026 27042 39812;39813;39814 39812 -0.04069906144900415 SEEPVMEKP 9 Unmodified _SEEPVMEKP_ 0 0 0 ENST00000394231.7_1_17:37885815-37885993:-|nuORF ENST00000394231.7_1_17:37885815-37885993:-|nuORF ENST00000394231.7_1_17:37885815-37885993:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6863403320312 2 523.247157 1044.47976 -0.65075 -0.0003405 0.54125 0.00028321 -0.1095 -5.7297E-05 523.2474480922609 43.353 1.6263 40.587 39.768 41.394 -2.7661 79 45 2 0 0 0 0.063679 1 7881 7881 43.982 35.23 1 14509000 40493 9407 27026 27042 39815 39815 -0.04069906144900415 SEEPVMEKP 9 Unmodified _SEEPVMEKP_ 0 0 0 ENST00000394231.7_1_17:37885815-37885993:-|nuORF ENST00000394231.7_1_17:37885815-37885993:-|nuORF ENST00000394231.7_1_17:37885815-37885993:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6849975585938 2 523.247157 1044.47976 0.021617 1.1311E-05 -0.24844 -0.00013 -0.22682 -0.00011868 523.246981400401 43.179 1.5006 40.573 39.932 41.433 -2.606 76 42 2 0 0 0 0.046396 2 7782 7782;7864 47.987 39.235 1 10931000 40494 9407 27026 27042 39816;39817 39816 -0.04069906144900415 SEEQIKFY 8 Unmodified _SEEQIKFY_ 0 0 0 tr|U7STG2|U7STG2_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01398PE=4SV=1 tr|U7STG2|U7STG2_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01398PE=4SV=1 tr|U7STG2|U7STG2_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01398PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2589721679688 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 49.792 1 46.785 46.285 47.285 -3.0068 0 0 0 0.21486 1 9137 9137 9.3474 3.587 1 40495 26146 27027 27043 39818 39818 -0.022422425476179342 SEEQLSRAY 9 Unmodified _SEEQLSRAY_ 0 0 0 UVSSA|p.R103Gfs*7|1|0.31|ENSG00000163945|chr4:1349726-1349726|C/-|frameshift_variant;ENSG00000163945|ENST00000389851|UVSSA UVSSA|p.R103Gfs*7|1|0.31|ENSG00000163945|chr4:1349726-1349726|C/-|frameshift_variant UVSSA|p.R103Gfs*7|1|0.31|ENSG00000163945|chr4:1349726-1349726|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2658081054688 2 541.759278 1081.504 0.16751 9.0752E-05 -1.3948 -0.00075566 -1.2273 -0.00066491 541.7592839692851 40.766 0.41592 38.276 38.006 38.422 -2.4896 23 11 3 0 0 0 0.545 1 7328 7328 36.506 5.8697 1 1201600 40496 5488 27028 27044 39819 39819 -0.033489296670495605 SEEQLSRAY 9 Unmodified _SEEQLSRAY_ 0 0 0 UVSSA|p.R103Gfs*7|1|0.31|ENSG00000163945|chr4:1349726-1349726|C/-|frameshift_variant;ENSG00000163945|ENST00000389851|UVSSA UVSSA|p.R103Gfs*7|1|0.31|ENSG00000163945|chr4:1349726-1349726|C/-|frameshift_variant UVSSA|p.R103Gfs*7|1|0.31|ENSG00000163945|chr4:1349726-1349726|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.759278 1081.504 0.41197 0.00022319 -0.90806 -0.00049195 -0.49608 -0.00026876 541.7589913380385 38.098 0.3571 38.098 37.927 38.284 0 -0.11096 -0.00066021 NaN 43.772 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 941690 40497 5488 27028 27044 -0.033489296670495605 SEEQLSRAY 9 Unmodified _SEEQLSRAY_ 0 0 0 UVSSA|p.R103Gfs*7|1|0.31|ENSG00000163945|chr4:1349726-1349726|C/-|frameshift_variant;ENSG00000163945|ENST00000389851|UVSSA UVSSA|p.R103Gfs*7|1|0.31|ENSG00000163945|chr4:1349726-1349726|C/-|frameshift_variant UVSSA|p.R103Gfs*7|1|0.31|ENSG00000163945|chr4:1349726-1349726|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.759278 1081.504 0.004638 2.5127E-06 0.13842 7.4991E-05 0.14306 7.7503E-05 541.759382742861 40.901 0.39093 38.266 38.077 38.468 -2.6348 0.056813 0.00047367 NaN 43.772 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1258600 40498 5488 27028 27044 -0.033489296670495605 SEEQMQWWH 9 Unmodified _SEEQMQWWH_ 0 0 0 REV__CCDC27|p.L639Cfs*8|2|0.39|ENSG00000162592|chr1:3771461-3771461|C/-|frameshift_variant REV__CCDC27|p.L639Cfs*8|2|0.39|ENSG00000162592|chr1:3771461-3771461|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7632446289062 2 630.758755 1259.50296 NaN NaN NaN NaN NaN NaN NaN 140.91 1 140.91 140.41 141.41 0 0 0 0 0.19684 1 28064 28064 0.029283 0.016017 1 + 40499 13295 27029 27045 39820 39820 -0.11641467307595121 SEESARLVA 9 Unmodified _SEESARLVA_ 0 0 0 ENSG00000008869|ENST00000233099|HEATR5B ENSG00000008869|ENST00000233099|HEATR5B ENSG00000008869|ENST00000233099|HEATR5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2507629394531 2 481.251089 960.487624 -0.25817 -0.00012424 -1.0402 -0.00050061 -1.2984 -0.00062485 481.250401421321 39.107 0.80782 36.558 36.192 36.999 -2.5491 59 22 4 0 0 0 0.17734 1 7259 7259 40.239 2.0636 1 4294100 40500 1049 27030 27046 39821 39821 0.005799891668516466 SEESARLVA 9 Unmodified _SEESARLVA_ 0 0 0 ENSG00000008869|ENST00000233099|HEATR5B ENSG00000008869|ENST00000233099|HEATR5B ENSG00000008869|ENST00000233099|HEATR5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7765197753906 2 481.251089 960.487624 0.062855 3.0249E-05 -1.5368 -0.0007396 -1.474 -0.00070935 481.25029242941616 39.033 0.55779 36.591 36.23 36.788 -2.4419 27 15 2 0 0 0 0.10537 2 6923 6923;6958 32.037 11.077 1 3368600 40501 1049 27030 27046 39822;39823 39822 0.005799891668516466 SEESARLVA 9 Unmodified _SEESARLVA_ 0 0 0 ENSG00000008869|ENST00000233099|HEATR5B ENSG00000008869|ENST00000233099|HEATR5B ENSG00000008869|ENST00000233099|HEATR5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25054931640625 2 481.251089 960.487624 0.039845 1.9176E-05 -1.0501 -0.00050534 -1.0102 -0.00048616 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 0.37634 1 6922 6922 27.223 4.487 1 69706000 40502 1049 27030 27046 39824 39824 0.005799891668516466 SEESRMRIA 9 Unmodified _SEESRMRIA_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2146301269531 3 360.181841 1077.52369 0.17759 6.3965E-05 -0.45704 -0.00016462 -0.27945 -0.00010065 360.1816779017913 30.631 0.53017 28.514 28.259 28.789 -2.1167 38 14 4 0 0 0 0.39591 1 5506 5506 26.021 5.4398 1 5282600 40503 3342 27031 27047 39825 39825 -0.011968769279064873 SEESRMRIA 9 Unmodified _SEESRMRIA_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.212646484375 3 360.181841 1077.52369 0.32794 0.00011812 -0.4985 -0.00017955 -0.17057 -6.1435E-05 360.1816064231981 30.455 0.52576 28.563 28.279 28.805 -1.8928 35 14 3 0 0 0 0.70121 1 5271 5271 6.1918 0.89496 1 3633900 40504 3342 27031 27047 39826 39826 -0.011968769279064873 SEESRMRIA 9 Unmodified _SEESRMRIA_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2131042480469 3 360.181841 1077.52369 -0.15289 -5.5068E-05 -0.080819 -2.9109E-05 -0.23371 -8.4177E-05 360.1818180388423 30.598 0.55662 28.524 28.257 28.813 -2.0743 36 15 3 0 0 0 0.25976 1 5261 5261 19.626 10.874 1 3378900 40505 3342 27031 27047 39827 39827 -0.011968769279064873 SEESRMRIA 9 Unmodified _SEESRMRIA_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 360.181841 1077.52369 -0.19746 -7.112E-05 -0.29948 -0.00010787 -0.49693 -0.00017899 360.18178568845076 28.571 0.52372 28.571 28.286 28.81 0 0.028001 2.67E-05 NaN 19.626 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2742900 40506 3342 27031 27047 -0.011968769279064873 SEETLLTH 8 Unmodified _SEETLLTH_ 0 0 0 REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24627685546875 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 67.683 1 64.186 63.686 64.686 -3.4965 0 0 0 0.22934 1 12703 12703 0.68139 0.054566 1 + 40507 21970 27032 27048 39828 39828 -0.016911020987663505 SEETLLTH 8 Unmodified _SEETLLTH_ 0 0 0 REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2588195800781 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 67.699 1 64.202 63.702 64.702 -3.4965 0 0 0 0.21323 1 12706 12706 14.582 0 1 + 40508 21970 27032 27048 39829 39829 -0.016911020987663505 SEETPAISP 9 Unmodified _SEETPAISP_ 0 0 0 nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.239990234375 2 465.724372 929.434192 -0.042044 -1.9581E-05 -0.050236 -2.3396E-05 -0.092281 -4.2977E-05 465.7242610738729 56.109 2.0069 56.109 55.369 57.376 0 148 56 4 0 0 0 0.026338 1 10786 10786 100.37 33.028 1 41697000 40509 12313 27033 27049 39830 39830 -0.0333480833566 SEETPAISP 9 Unmodified _SEETPAISP_ 0 0 0 nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.4859619140625 1 930.441468 929.434192 0.089917 8.3663E-05 0.18319 0.00017045 0.27311 0.00025411 930.4415226507598 59.075 1.1551 56.165 55.579 56.734 -2.9105 82 32 3 0 0 0 0.011131 2 11273 11273;11456 8.9129 6.0303 1 12747000 40510 12313 27033 27049 39831;39832 39831 -0.0333480833566 SEETPAISP 9 Unmodified _SEETPAISP_ 0 0 0 nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2400207519531 2 465.724372 929.434192 -0.11475 -5.344E-05 -0.13825 -6.4385E-05 -0.25299 -0.00011782 465.72424030568527 59.101 2.1962 56.191 55.337 57.533 -2.9105 175 62 4 0 0 0 0.029847 1 11429 11429 88.904 40.558 1 71753000 40511 12313 27033 27049 39833 39833 -0.0333480833566 SEETPAISP 9 Unmodified _SEETPAISP_ 0 0 0 nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2401123046875 2 465.724372 929.434192 0.045384 2.1136E-05 -0.23691 -0.00011034 -0.19153 -8.9199E-05 465.7241888891029 59.506 1.4462 56.192 55.355 56.801 -3.3139 139 40 4 0 0 0 0.029847 1 11124 11124 100.37 42.9 1 58753000 40512 12313 27033 27049 39834 39834 -0.0333480833566 SEETPAISP 9 Unmodified _SEETPAISP_ 0 0 0 nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2398681640625 2 465.724372 929.434192 0.12218 5.6902E-05 -0.27604 -0.00012856 -0.15386 -7.1657E-05 465.7241846249357 59.369 2.1469 56.145 55.45 57.597 -3.2237 160 60 4 0 0 0 0.027812 1 11116 11116 104.8 47.328 1 45452000 40513 12313 27033 27049 39835 39835 -0.0333480833566 SEETPAISP 9 Unmodified _SEETPAISP_ 0 0 0 nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 930.441468 929.434192 0.37298 0.00034703 -0.010438 -9.712E-06 0.36254 0.00033732 930.4413430896986 56.073 1.1589 56.073 55.516 56.675 0 -0.064185 -6.8814E-05 NaN 8.9129 73 32 3 NaN NaN NaN NaN 0 NaN NaN 0 10050000 40514 12313 27033 27049 -0.0333480833566 SEETPAISP 9 Unmodified _SEETPAISP_ 0 0 0 nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 930.441468 929.434192 0.31786 0.00029575 0.018567 1.7276E-05 0.33643 0.00031303 930.4414238052476 59.453 1.1961 56.139 55.461 56.657 -3.3139 0.0014339 -4.1826E-05 NaN 8.9129 80 33 3 NaN NaN NaN NaN 0 NaN NaN 0 13549000 40515 12313 27033 27049 -0.0333480833566 SEETPAISP 9 Unmodified _SEETPAISP_ 0 0 0 nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 930.441468 929.434192 0.25817 0.00024021 0.041828 3.8919E-05 0.3 0.00027913 930.4415513952275 59.397 1.1203 56.173 55.627 56.747 -3.2237 0.035623 -2.0183E-05 NaN 8.9129 95 31 4 NaN NaN NaN NaN 0 NaN NaN 0 12791000 40516 12313 27033 27049 -0.0333480833566 SEETPLTAA 9 Unmodified _SEETPLTAA_ 0 0 0 ENSG00000182154|ENST00000371443|MRPL41 ENSG00000182154|ENST00000371443|MRPL41 ENSG00000182154|ENST00000371443|MRPL41 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2263488769531 2 459.724372 917.434192 0.054948 2.5261E-05 0.54757 0.00025173 0.60252 0.00027699 459.72452494457366 56.4 1.2568 56.4 55.836 57.093 0 92 35 4 0 0 0 0.011913 4 10720 10689;10720;10778;10821 100.37 64.327 1 13320000 40517 6768 27034 27050 39836;39837;39838;39839 39837 -0.027828083356666866 SEETPLTAA 9 Unmodified _SEETPLTAA_ 0 0 0 ENSG00000182154|ENST00000371443|MRPL41 ENSG00000182154|ENST00000371443|MRPL41 ENSG00000182154|ENST00000371443|MRPL41 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2264404296875 2 459.724372 917.434192 -0.14022 -6.446E-05 0.60663 0.00027888 0.46641 0.00021442 459.7245582787501 59.172 1.7431 56.261 55.203 56.946 -2.9105 116 49 4 0 0 0 0.011913 1 11399 11399 100.37 64.327 1 22593000 40518 6768 27034 27050 39840 39840 -0.027828083356666866 SEETPLTAA 9 Unmodified _SEETPLTAA_ 0 0 0 ENSG00000182154|ENST00000371443|MRPL41 ENSG00000182154|ENST00000371443|MRPL41 ENSG00000182154|ENST00000371443|MRPL41 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2263488769531 2 459.724372 917.434192 0.035505 1.6322E-05 0.48554 0.00022322 0.52105 0.00023954 459.72450180912955 59.487 1.5178 56.173 55.461 56.979 -3.3139 109 42 4 0 0 0 0.019538 1 11104 11104 92.822 56.778 1 18176000 40519 6768 27034 27050 39841 39841 -0.027828083356666866 SEETPLTAA 9 Unmodified _SEETPLTAA_ 0 0 0 ENSG00000182154|ENST00000371443|MRPL41 ENSG00000182154|ENST00000371443|MRPL41 ENSG00000182154|ENST00000371443|MRPL41 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.22637939453125 2 459.724372 917.434192 0.12072 5.5499E-05 0.47594 0.0002188 0.59666 0.0002743 459.7244787980645 59.498 1.5092 56.275 55.52 57.029 -3.2237 111 42 4 0 0 0 0.011913 2 11139 11041;11139 100.37 64.327 1 16256000 40520 6768 27034 27050 39842;39843 39843 -0.027828083356666866 SEEVFIRSGA 10 Unmodified _SEEVFIRSGA_ 0 0 0 REV__nc|ENSG00000128918|O94788-4|ALDH1A2 REV__nc|ENSG00000128918|O94788-4|ALDH1A2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.779052734375 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 28.377 1 26.622 26.122 27.122 -1.7552 0 0 0 0.22588 1 4787 4787 8.7454 0.83525 1 + 40521 15940 27035 27051 39844 39844 -0.0026405277030789875 SEEVFRSGAL 10 Unmodified _SEEVFRSGAL_ 0 0 0 DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1 DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7793579101562 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 21.657 1 20.272 19.772 20.772 -1.3847 0 0 0 0.22518 1 3418 3418 22.736 0.98964 1 40522 774 27036 27052 39845 39845 -0.0026405277030789875 SEEVIVER 8 Unmodified _SEEVIVER_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.239990234375 2 480.753464 959.492375 -0.0085196 -4.0958E-06 0.24131 0.00011601 0.23279 0.00011191 480.75348638421497 44.689 0.49064 41.923 41.664 42.155 -2.7661 22 13 2 0 0 0 0.19607 1 8074 8074 46.021 7.8454 1 2364200 + 40523 15894 27037 27053 39846 39846 0.011008733096332435 SEEVIVER 8 Unmodified _SEEVIVER_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2548522949219 2 480.753464 959.492375 -0.14524 -6.9823E-05 0.19949 9.5905E-05 0.054251 2.6081E-05 480.75356676950435 44.682 0.56671 41.935 41.533 42.1 -2.7475 22 15 2 0 0 0 0.62642 1 8106 8106 20.454 1.1966 1 2373500 + 40524 15894 27037 27053 39847 39847 0.011008733096332435 SEEVLGHFPY 10 Unmodified _SEEVLGHFPY_ 0 0 0 ENSG00000090266|ENST00000247866|NDUFB2 ENSG00000090266|ENST00000247866|NDUFB2 ENSG00000090266|ENST00000247866|NDUFB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2481689453125 2 589.279846 1176.54514 0.65501 0.00038598 -1.0794 -0.00063608 -0.42441 -0.0002501 589.2790345884291 104.46 0.65326 104.46 104.14 104.79 0 23 18 2 0 0 0 0.65405 1 20492 20492 15.847 2.8047 1 1457600 40525 1780 27038 27054 39848 39848 -0.036071686275590764 SEEVLGHFPY 10 Unmodified _SEEVLGHFPY_ 0 0 0 ENSG00000090266|ENST00000247866|NDUFB2 ENSG00000090266|ENST00000247866|NDUFB2 ENSG00000090266|ENST00000247866|NDUFB2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 589.279846 1176.54514 -0.038699 -2.2804E-05 0.20827 0.00012273 0.16957 9.9922E-05 589.2799686319399 109.08 0.63619 104.7 104.47 105.1 -4.3776 0.056135 0.00062595 NaN 15.847 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1785300 40526 1780 27038 27054 -0.036071686275590764 SEEVLGHFPY 10 Unmodified _SEEVLGHFPY_ 0 0 0 ENSG00000090266|ENST00000247866|NDUFB2 ENSG00000090266|ENST00000247866|NDUFB2 ENSG00000090266|ENST00000247866|NDUFB2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.279846 1176.54514 0.23485 0.00013839 -0.41875 -0.00024676 -0.1839 -0.00010837 589.2793791648679 109.14 0.73034 104.69 104.43 105.16 -4.4518 0.049365 -0.00011302 NaN 15.847 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1139800 40527 1780 27038 27054 -0.036071686275590764 SEEVLGHFPY 10 Unmodified _SEEVLGHFPY_ 0 0 0 ENSG00000090266|ENST00000247866|NDUFB2 ENSG00000090266|ENST00000247866|NDUFB2 ENSG00000090266|ENST00000247866|NDUFB2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 589.279846 1176.54514 0.675 0.00039777 -0.75391 -0.00044426 -0.078901 -4.6495E-05 589.279310604068 108.9 0.56008 104.72 104.46 105.02 -4.1826 0.079741 -0.00050802 NaN 15.847 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1185900 40528 1780 27038 27054 -0.036071686275590764 SEEVRLRSF 9 Unmodified _SEEVRLRSF_ 0 0 0 ENSG00000164109|ENST00000296509|MAD2L1;ENST00000504707.1_1_4:120981275-120987923:-|nuORF ENSG00000164109|ENST00000296509|MAD2L1 ENSG00000164109|ENST00000296509|MAD2L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20806884765625 3 374.86825 1121.58292 -0.73452 -0.00027535 0.54561 0.00020453 -0.18891 -7.0817E-05 374.86834533856967 53.038 0.58333 49.942 49.656 50.239 -3.0954 26 16 2 0 0 0 0.8799 1 9744 9744 0.20686 0.20686 1 1533900 40529 5509 27039 27055 39849 39849 0.026993423579142473 SEFDLNQAY 9 Unmodified _SEFDLNQAY_ 0 0 0 REV__ENSG00000152193|ENST00000282003|OBI1 REV__ENSG00000152193|ENST00000282003|OBI1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77490234375 2 543.740554 1085.46655 NaN NaN NaN NaN NaN NaN NaN 94.167 1 90.323 89.823 90.823 -3.844 0 0 0 0.23411 1 18062 18062 13.508 1.2672 1 + 40530 17097 27040 27056 39850 39850 -0.07276020932658867 SEFDRKNKA 9 Unmodified _SEFDRKNKA_ 0 0 0 REV__ENSG00000127311|ENST00000247815|HELB REV__ENSG00000127311|ENST00000247815|HELB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7769775390625 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 80.465 1 80.465 79.965 80.965 0 0 0 0 0.23508 1 15665 15665 10.824 0.75 1 + 40531 15882 27041 27057 39851 39851 0.008587693238041538 SEFEIRKV 8 Unmodified _SEFEIRKV_ 0 0 0 tr|U7T3N0|U7T3N0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00466PE=4SV=1 tr|U7T3N0|U7T3N0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00466PE=4SV=1 tr|U7T3N0|U7T3N0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00466PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 504.281982421875 2 504.279649 1006.54475 NaN NaN NaN NaN NaN NaN NaN 86.774 1 83.047 82.547 83.547 -3.727 0 0 0 0.21486 1 16966 16966 9.3474 0 1 40532 26410 27042 27058 39852 39852 0.0417345644324314 SEFEMNTCDSP 11 Unmodified _SEFEMNTCDSP_ 0 0 0 REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7648315429688 2 630.231378 1258.4482 0.47995 0.00030248 -0.47984 -0.00030241 0.00011155 7.03E-08 630.2310854597253 103.43 2.3656 99.083 97.779 100.14 -4.346 224 67 4 0 0 0 0.43824 3 19717 19717;19802;19965 29.841 3.454 1 31726000 + 40533 13707 27043 27059 39853;39854;39855 39853 -0.1706826696117787 SEFERALQ 8 Unmodified _SEFERALQ_ 0 0 0 ENSG00000138867|ENST00000435822|GUCD1;nc|ENSG00000138867|Q96NT3|GUCD1;nc|ENSG00000138867|Q96NT3-3|GUCD1;ENST00000468170.1_1_22:24943827-24950959:-|nuORF ENSG00000138867|ENST00000435822|GUCD1 ENSG00000138867|ENST00000435822|GUCD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26580810546875 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 30.733 1 30.733 30.233 31.233 0 0 0 0 0.21486 1 5531 5531 12.532 3.1841 1 40534 4216 27044 27060 39856 39856 -0.013039934875678227 SEFGVRGY 8 Unmodified _SEFGVRGY_ 0 0 0 nc|ENSG00000166479|Q96JJ7-2|TMX3;ENSG00000166479|ENST00000299608|TMX3 nc|ENSG00000166479|Q96JJ7-2|TMX3 nc|ENSG00000166479|Q96JJ7-2|TMX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2381896972656 2 457.721967 913.429381 -0.0588 -2.6914E-05 0.25996 0.00011899 0.20116 9.2074E-05 457.7220245382899 66.305 0.45158 66.305 66.102 66.553 0 20 12 2 0 0 0 0.23433 1 12769 12769 42.095 18.946 1 2349300 40535 5729 27045 27061 39857 39857 -0.03079647687764009 SEFGVRGY 8 Unmodified _SEFGVRGY_ 0 0 0 nc|ENSG00000166479|Q96JJ7-2|TMX3;ENSG00000166479|ENST00000299608|TMX3 nc|ENSG00000166479|Q96JJ7-2|TMX3 nc|ENSG00000166479|Q96JJ7-2|TMX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2240295410156 2 457.721967 913.429381 -0.19006 -8.6995E-05 0.46479 0.00021274 0.27473 0.00012575 457.7221611732975 69.71 0.56438 66.53 66.295 66.859 -3.1796 31 15 3 0 0 0 0.23433 2 13534 13534;13578 42.095 18.946 1 4012300 40536 5729 27045 27061 39858;39859 39858 -0.03079647687764009 SEFGVRGY 8 Unmodified _SEFGVRGY_ 0 0 0 nc|ENSG00000166479|Q96JJ7-2|TMX3;ENSG00000166479|ENST00000299608|TMX3 nc|ENSG00000166479|Q96JJ7-2|TMX3 nc|ENSG00000166479|Q96JJ7-2|TMX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2239990234375 2 457.721967 913.429381 0.32754 0.00014992 0.095345 4.3641E-05 0.42288 0.00019356 457.7218996404418 70.103 0.55772 66.523 66.21 66.768 -3.5798 26 15 2 0 0 0 0.07389 4 13178 13154;13178;13204;13230 71.134 42.647 1 2115200 40537 5729 27045 27061 39860;39861;39862;39863 39861 -0.03079647687764009 SEFGVRGY 8 Unmodified _SEFGVRGY_ 0 0 0 nc|ENSG00000166479|Q96JJ7-2|TMX3;ENSG00000166479|ENST00000299608|TMX3 nc|ENSG00000166479|Q96JJ7-2|TMX3 nc|ENSG00000166479|Q96JJ7-2|TMX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22381591796875 2 457.721967 913.429381 0.33423 0.00015299 -0.067672 -3.0975E-05 0.26656 0.00012201 457.72181532487616 69.799 0.62799 66.409 66.19 66.818 -3.3903 30 17 2 0 0 0 0.23433 2 13205 13205;13256 42.095 11.87 1 3119100 40538 5729 27045 27061 39864;39865 39864 -0.03079647687764009 SEFHSCHL 8 Unmodified _SEFHSCHL_ 0 0 0 REV__ENST00000409381.5_1_2:150327519-150327687:+|nuORF REV__ENST00000409381.5_1_2:150327519-150327687:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2321472167969 2 480.205627 958.396701 0.2076 9.969E-05 0.34929 0.00016773 0.55689 0.00026742 480.2058072119406 63.226 0.82264 59.969 59.61 60.432 -3.2567 58 23 3 0 0 0 0.76728 1 11821 11821 5.7604 0 1 11528000 + 40539 21409 27046 27062 39866 39866 -0.0841617808225692 SEFKAATVSH 10 Unmodified _SEFKAATVSH_ 0 0 0 ENSG00000136002|ENST00000409359|ARHGEF4 ENSG00000136002|ENST00000409359|ARHGEF4 ENSG00000136002|ENST00000409359|ARHGEF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2127685546875 3 359.517218 1075.52982 0.050212 1.8052E-05 -0.13712 -4.9295E-05 -0.086903 -3.1243E-05 359.51711040130016 52.206 0.41843 49.118 48.881 49.299 -3.0876 16 11 2 0 0 0 0.74977 1 9631 9631 5.7834 1.4542 1 1170300 40540 3975 27047 27063 39867 39867 -0.0049203542478153395 SEFKAATVSH 10 Unmodified _SEFKAATVSH_ 0 0 0 ENSG00000136002|ENST00000409359|ARHGEF4 ENSG00000136002|ENST00000409359|ARHGEF4 ENSG00000136002|ENST00000409359|ARHGEF4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 359.517218 1075.52982 -0.0036862 -1.3252E-06 -0.12503 -4.4951E-05 -0.12872 -4.6276E-05 359.51710454156165 49.434 0.31491 49.434 49.232 49.547 0 0.15812 5.4194E-06 NaN 5.7834 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 737190 40541 3975 27047 27063 -0.0049203542478153395 SEFKAKGY 8 Unmodified _SEFKAKGY_ 0 0 0 ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B ENSG00000165914|ENST00000328459|TTC7B ENSG00000165914|ENST00000328459|TTC7B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2401428222656 2 465.239993 928.465432 0.1468 6.8299E-05 -0.80927 -0.0003765 -0.66246 -0.0003082 465.2396275653822 22.874 0.31102 22.874 22.749 23.06 0 10 8 2 0 0 0 0.36038 2 3877 3877;3895 34.102 5.6156 1 431340 40542 5675 27048 27064 39868;39869 39868 -0.0016619051090174253 SEFKAKGY 8 Unmodified _SEFKAKGY_ 0 0 0 ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B ENSG00000165914|ENST00000328459|TTC7B ENSG00000165914|ENST00000328459|TTC7B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697082519531 3 310.495754 928.465432 -0.4691 -0.00014565 0.80193 0.000249 0.33283 0.00010334 310.49598196371176 22.82 0.27704 22.82 22.749 23.026 0 11 7 2 0 0 0 1.0147 1 3873 3873 1.4819 0.41044 1 387520 40543 5675 27048 27064 39870 39870 -0.0016619051090174253 SEFKAKGY 8 Unmodified _SEFKAKGY_ 0 0 0 ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B ENSG00000165914|ENST00000328459|TTC7B ENSG00000165914|ENST00000328459|TTC7B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2574462890625 2 465.239993 928.465432 0.9395 0.00043709 -1.4969 -0.0006964 -0.55736 -0.00025931 465.2392537245457 24.573 0.3767 22.925 22.649 23.025 -1.6482 16 10 2 0 0 0 0.16655 3 4285 4260;4285;4301 49.933 16.44 1 629920 40544 5675 27048 27064 39871;39872;39873 39872 -0.0016619051090174253 SEFKAKGY 8 Unmodified _SEFKAKGY_ 0 0 0 ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B ENSG00000165914|ENST00000328459|TTC7B ENSG00000165914|ENST00000328459|TTC7B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2400207519531 2 465.239993 928.465432 -0.027156 -1.2634E-05 -0.83859 -0.00039014 -0.86574 -0.00040278 465.23974235152673 24.394 0.3117 22.86 22.679 22.991 -1.5342 20 8 3 0 0 0 0.14695 1 3970 3970 53.833 17.706 1 824580 40545 5675 27048 27064 39874 39874 -0.0016619051090174253 SEFKAKGY 8 Unmodified _SEFKAKGY_ 0 0 0 ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B ENSG00000165914|ENST00000328459|TTC7B ENSG00000165914|ENST00000328459|TTC7B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2397766113281 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 24.623 1 22.769 22.269 23.269 -1.8534 0 0 0 0.14659 1 4011 4011 37.974 12.575 1 40546 5675 27048 27064 39875 39875 -0.0016619051090174253 SEFKAKGY 8 Unmodified _SEFKAKGY_ 0 0 0 ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B ENSG00000165914|ENST00000328459|TTC7B ENSG00000165914|ENST00000328459|TTC7B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2591857910156 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 24.738 1 22.885 22.385 23.385 -1.8534 0 0 0 0.17344 1 4036 4036 34.102 12.356 1 40547 5675 27048 27064 39876 39876 -0.0016619051090174253 SEFKAKGY 8 Unmodified _SEFKAKGY_ 0 0 0 ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B ENSG00000165914|ENST00000328459|TTC7B ENSG00000165914|ENST00000328459|TTC7B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 310.495754 928.465432 0.014516 4.5071E-06 0.2351 7.2998E-05 0.24962 7.7506E-05 310.4957003224285 24.347 0.27643 22.813 22.714 22.991 -1.5342 0.0050246 -0.0002113 NaN 1.4819 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 255140 40548 5675 27048 27064 -0.0016619051090174253 SEFKFWFCYC 10 Unmodified _SEFKFWFCYC_ 0 0 0 nc|ENSG00000196668|Q6ZV60|LINC00173 nc|ENSG00000196668|Q6ZV60|LINC00173 nc|ENSG00000196668|Q6ZV60|LINC00173 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75872802734375 3 453.856077 1358.5464 NaN NaN NaN NaN NaN NaN NaN 12.831 1 12.831 12.331 13.331 0 0 0 0 0.22588 1 1813 1813 0.69767 0 1 40549 12536 27049 27065 39877 39877 -0.11852993854654414 SEFNCSQL 8 Unmodified _SEFNCSQL_ 0 0 0 REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24102783203125 2 464.197467 926.380382 -0.27483 -0.00012758 0.89078 0.0004135 0.61595 0.00028592 464.19783294622255 112.42 0.76239 107.97 107.67 108.43 -4.4539 51 21 3 0 0 0 0.73426 1 22140 22140 9.3474 0 1 4522700 + 40550 23480 27050 27066 39878 39878 -0.08575304039027287 SEFNCSQL 8 Unmodified _SEFNCSQL_ 0 0 0 REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.197467 926.380382 0.30622 0.00014215 0.34386 0.00015962 0.65008 0.00030176 464.1975704422354 107.97 0.86789 107.97 107.51 108.38 0 -0.098142 -0.00027095 NaN 9.3474 58 24 3 NaN NaN NaN NaN 0 NaN NaN 0 8380000 + 40551 23480 27050 27066 -0.08575304039027287 SEFNCSQL 8 Unmodified _SEFNCSQL_ 0 0 0 REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.197467 926.380382 -0.27483 -0.00012758 0.89078 0.0004135 0.61595 0.00028592 464.19783294622255 112.42 0.76239 107.97 107.67 108.43 -4.4539 -0.098031 0.00023681 NaN 9.3474 51 21 3 NaN NaN NaN NaN 0 NaN NaN 0 4522700 + 40552 23480 27050 27066 -0.08575304039027287 SEFNCSQL 8 Unmodified _SEFNCSQL_ 0 0 0 REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.197467 926.380382 -0.038334 -1.7795E-05 1.0783 0.00050057 1.04 0.00048277 464.197897907496 112.76 0.8815 108.23 107.66 108.54 -4.5259 0.16303 0.00041095 NaN 9.3474 56 24 3 NaN NaN NaN NaN 0 NaN NaN 0 8564200 + 40553 23480 27050 27066 -0.08575304039027287 SEFNCSQL 8 Unmodified _SEFNCSQL_ 0 0 0 REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.197467 926.380382 0.58734 0.00027264 0.078509 3.6444E-05 0.66585 0.00030908 464.1974486163166 112.37 0.76457 108.1 107.7 108.46 -4.2726 0.033142 -0.0005173 NaN 9.3474 51 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6764300 + 40554 23480 27050 27066 -0.08575304039027287 SEFPIRTL 8 Unmodified _SEFPIRTL_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7689208984375 2 481.768917 961.523281 -0.00045244 -2.1797E-07 0.2206 0.00010628 0.22014 0.00010606 481.7689308308324 117.46 0.90845 117.46 117.02 117.93 0 56 25 4 0 0 0 0.058815 2 23129 23100;23129 85.642 10.713 1 19542000 40555 565 27051 27067 39879;39880 39880 0.04098071414523474 SEFPIRTL 8 Unmodified _SEFPIRTL_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7690124511719 2 481.768917 961.523281 0.27876 0.0001343 0.010401 5.0109E-06 0.28916 0.00013931 481.7688385227152 121.7 0.92487 117.15 116.64 117.56 -4.5476 70 25 4 0 0 0 0.058815 2 23966 23966;24019 85.642 10.713 1 33535000 40556 565 27051 27067 39881;39882 39881 0.04098071414523474 SEFPIRTL 8 Unmodified _SEFPIRTL_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7689208984375 2 481.768917 961.523281 0.59318 0.00028578 -0.27511 -0.00013254 0.31807 0.00015324 481.76869842300147 121.8 0.95226 117.11 116.66 117.61 -4.6873 75 26 4 0 0 0 0.058815 2 23405 23353;23405 85.642 10.713 1 26355000 40557 565 27051 27067 39883;39884 39884 0.04098071414523474 SEFPIRTL 8 Unmodified _SEFPIRTL_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7689514160156 2 481.768917 961.523281 0.24922 0.00012007 0.020002 9.6364E-06 0.26922 0.0001297 481.76883045939104 121.63 1.0147 117.1 116.61 117.62 -4.5305 75 27 4 0 0 0 0.058815 2 23426 23426;23465 85.642 10.713 1 20530000 40558 565 27051 27067 39885;39886 39885 0.04098071414523474 SEFPLLRT 8 Unmodified _SEFPLLRT_ 0 0 0 REV__TMEM164|p.L174S|1|0.24|ENSG00000157600|chrX:110144811-110144811|T/C|missense_variant REV__TMEM164|p.L174S|1|0.24|ENSG00000157600|chrX:110144811-110144811|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76898193359375 2 481.768917 961.523281 -0.00045244 -2.1797E-07 0.2206 0.00010628 0.22014 0.00010606 481.7689308308324 117.46 0.90845 117.46 117.02 117.93 0 56 25 4 0 0 0 0.089098 2 23176 23081;23176 65.235 7.513 1 19542000 + 40559 24817 27052 27068 39887;39888 39888 0.04098071414523474 SEFPLLRT 8 Unmodified _SEFPLLRT_ 0 0 0 REV__TMEM164|p.L174S|1|0.24|ENSG00000157600|chrX:110144811-110144811|T/C|missense_variant REV__TMEM164|p.L174S|1|0.24|ENSG00000157600|chrX:110144811-110144811|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78521728515625 2 481.768917 961.523281 0.59318 0.00028578 -0.27511 -0.00013254 0.31807 0.00015324 481.76869842300147 121.8 0.95226 117.11 116.66 117.61 -4.6873 75 26 4 0 0 0 0.17924 2 23333 23333;23460 47.749 2.0491 1 26355000 + 40560 24817 27052 27068 39889;39890 39889 0.04098071414523474 SEFPLLRT 8 Unmodified _SEFPLLRT_ 0 0 0 REV__TMEM164|p.L174S|1|0.24|ENSG00000157600|chrX:110144811-110144811|T/C|missense_variant REV__TMEM164|p.L174S|1|0.24|ENSG00000157600|chrX:110144811-110144811|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7689208984375 2 481.768917 961.523281 0.24922 0.00012007 0.020002 9.6364E-06 0.26922 0.0001297 481.76883045939104 121.63 1.0147 117.1 116.61 117.62 -4.5305 75 27 4 0 0 0 0.17924 1 23375 23375 47.749 2.0491 1 20530000 + 40561 24817 27052 27068 39891 39891 0.04098071414523474 SEFPSWDL 8 Unmodified _SEFPSWDL_ 0 0 0 ENST00000394518.6_1_15:86289980-86290061:+|nuORF ENST00000394518.6_1_15:86289980-86290061:+|nuORF ENST00000394518.6_1_15:86289980-86290061:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2648620605469 2 490.721633 979.428712 0.18062 8.8633E-05 1.1193 0.00054927 1.2999 0.0006379 490.72155775170614 118.39 0.67475 118.39 118 118.68 0 26 18 2 0 0 0 0.93477 1 23269 23269 18.135 0 1 1690700 40562 9415 27053 27069 39892 39892 -0.06182487127477998 SEFRNGGY 8 Unmodified _SEFRNGGY_ 0 0 0 REV__ENST00000591055.5_1_19:1271297-1272439:+|nuORF REV__ENST00000591055.5_1_19:1271297-1272439:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2505798339844 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 72.964 1 69.425 68.925 69.925 -3.5385 0 0 0 0.21486 1 13837 13837 10.183 4.423 1 + 40563 14640 27054 27070 39893 39893 -0.0631712221018006 SEFRVIVI 8 Unmodified _SEFRVIVI_ 0 0 0 REV__ZW10|p.I275V|1|0.16|ENSG00000086827|chr11:113757764-113757764|T/C|missense_variant REV__ZW10|p.I275V|1|0.16|ENSG00000086827|chr11:113757764-113757764|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7872009277344 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 122.75 1 118.02 117.52 118.52 -4.731 0 0 0 0.20568 1 23576 23576 20.871 2.7362 1 + 40564 25601 27055 27071 39894 39894 0.07734948311224343 SEFSFSKL 8 Unmodified _SEFSFSKL_ 0 0 0 nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11 nc|ENSG00000104133|Q96JI7-2|SPG11 nc|ENSG00000104133|Q96JI7-2|SPG11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 472.77734375 2 472.739825 943.465098 0.16048 7.5868E-05 -0.25992 -0.00012287 -0.099434 -4.7006E-05 472.7396713002663 127.72 0.71201 123.02 122.53 123.25 -4.6998 29 19 2 0 0 0 8448 1 24511 24511 36.506 16.053 1 1912900 40565 2219 27056 27072 39895 39895 -0.00889610230751714 SEFSFSKL 8 Unmodified _SEFSFSKL_ 0 0 0 nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11 nc|ENSG00000104133|Q96JI7-2|SPG11 nc|ENSG00000104133|Q96JI7-2|SPG11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 472.739825 943.465098 -0.089492 -4.2306E-05 0.019406 9.1739E-06 -0.070086 -3.3132E-05 472.7399859758381 123.15 0.38903 123.15 122.96 123.35 0 0.14956 0.00013055 NaN 36.506 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 873660 40566 2219 27056 27072 -0.00889610230751714 SEFSFSKL 8 Unmodified _SEFSFSKL_ 0 0 0 nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11 nc|ENSG00000104133|Q96JI7-2|SPG11 nc|ENSG00000104133|Q96JI7-2|SPG11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 472.739825 943.465098 0.037987 1.7958E-05 -0.19475 -9.2065E-05 -0.15676 -7.4107E-05 472.73972162315874 127.54 0.63192 122.92 122.64 123.27 -4.6172 -0.080504 -7.193E-05 NaN 36.506 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2351200 40567 2219 27056 27072 -0.00889610230751714 SEFSFSKL 8 Unmodified _SEFSFSKL_ 0 0 0 nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11 nc|ENSG00000104133|Q96JI7-2|SPG11 nc|ENSG00000104133|Q96JI7-2|SPG11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 472.739825 943.465098 0.14242 6.7328E-05 0.21758 0.00010286 0.36 0.00017019 472.73987055608814 127.71 0.66209 122.92 122.59 123.26 -4.7958 -0.087737 0.00031792 NaN 36.506 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2534900 40568 2219 27056 27072 -0.00889610230751714 SEFSHEAV 8 Unmodified _SEFSHEAV_ 0 0 0 AP2A2|p.T367M|1|0.36|ENSG00000183020|chr11:986922-986922|C/T|missense_variant;ENST00000524952.2_1_11:985541-988707:+|nuORF;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;AP2A2|p.Q403Tfs*14|1|0.28|ENSG00000183020|chr11:988621-988622|-/C|frameshift_variant;nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1 AP2A2|p.T367M|1|0.36|ENSG00000183020|chr11:986922-986922|C/T|missense_variant AP2A2|p.T367M|1|0.36|ENSG00000183020|chr11:986922-986922|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7484436035156 2 453.203607 904.392661 -0.34342 -0.00015564 0.40463 0.00018338 0.061218 2.7744E-05 453.2036802132918 40.409 0.39522 37.774 37.506 37.901 -2.6348 22 10 3 0 0 0 0.16192 1 7513 7513 50.855 14.811 1 4884400 40569 172 27057 27073 39896 39896 -0.06335944304328223 SEFSHEAV 8 Unmodified _SEFSHEAV_ 0 0 0 AP2A2|p.T367M|1|0.36|ENSG00000183020|chr11:986922-986922|C/T|missense_variant;ENST00000524952.2_1_11:985541-988707:+|nuORF;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;AP2A2|p.Q403Tfs*14|1|0.28|ENSG00000183020|chr11:988621-988622|-/C|frameshift_variant;nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1 AP2A2|p.T367M|1|0.36|ENSG00000183020|chr11:986922-986922|C/T|missense_variant AP2A2|p.T367M|1|0.36|ENSG00000183020|chr11:986922-986922|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 453.203607 904.392661 0.33221 0.00015056 -0.55684 -0.00025236 -0.22463 -0.0001018 453.203269642749 37.805 0.49318 37.805 37.508 38.001 0 0.022306 -0.00061667 NaN 50.855 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3772300 40570 172 27057 27073 -0.06335944304328223 SEFSHGCY 8 Unmodified _SEFSHGCY_ 0 0 0 REV__TSHZ1|p.K450Efs*47|1|0.13|ENSG00000179981|chr18:75286754-75286755|TA/-|frameshift_variant;REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2477722167969 2 465.176535 928.338517 NaN NaN NaN NaN NaN NaN NaN 74.806 1 71.212 70.712 71.712 -3.594 0 0 0 0.21486 1 14213 14213 5.7604 0.52976 1 + 40571 15651;25491 27058 27074 39897 39897 -0.12851859727538795 SEFTETCI 8 Unmodified _SEFTETCI_ 0 0 0 REV__ENST00000513200.7_2_5:93798178-93798223:-|nuORF REV__ENST00000513200.7_2_5:93798178-93798223:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24114990234375 2 465.199676 928.384799 NaN NaN NaN NaN NaN NaN NaN 98.073 1 98.073 97.573 98.573 0 0 0 0 0.13047 1 19221 19221 1.7423 0 1 + 40572 22567 27059 27075 39898 39898 -0.08225839616136454 SEFTETCI 8 Unmodified _SEFTETCI_ 0 0 0 REV__ENST00000513200.7_2_5:93798178-93798223:-|nuORF REV__ENST00000513200.7_2_5:93798178-93798223:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2496643066406 2 465.199676 928.384799 NaN NaN NaN NaN NaN NaN NaN 103 1 98.818 98.318 99.318 -4.1861 0 0 0 0.18417 1 20249 20249 30.225 0 1 + 40573 22567 27059 27075 39899 39899 -0.08225839616136454 SEFVAETH 8 Unmodified _SEFVAETH_ 0 0 0 ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.235595703125 2 460.211432 918.408311 0.23748 0.00010929 1.1215 0.00051611 1.3589 0.0006254 460.21208807388876 32.017 0.31153 32.017 31.913 32.224 0 11 8 2 0 0 0 0.72428 1 5786 5786 10.824 5.0921 1 348060 40574 228 27060 27076 39900 39900 -0.054156577872845446 SEFVAETH 8 Unmodified _SEFVAETH_ 0 0 0 ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.229736328125 2 460.211432 918.408311 -0.20398 -9.3875E-05 -0.070785 -3.2576E-05 -0.27477 -0.00012645 460.21164594611787 34.22 0.49062 31.903 31.664 32.155 -2.3175 21 13 2 0 0 0 0.68128 1 6264 6264 16.942 3.4344 1 496780 40575 228 27060 27076 39901 39901 -0.054156577872845446 SEFVAETH 8 Unmodified _SEFVAETH_ 0 0 0 ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant;ASAP2|p.L787Afs*16|1|0.31|ENSG00000151693|chr2:9388513-9388514|-/C|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant ASAP2|p.H548Qfs*57|1|0.14|ENSG00000151693|chr2:9374842-9374842|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.211432 918.408311 0.15268 7.0266E-05 0.26282 0.00012095 0.41551 0.00019122 460.2116180532384 34.093 0.48232 31.946 31.707 32.189 -2.1468 -0.009343 -0.00015037 NaN 16.942 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 570570 40576 228 27060 27076 -0.054156577872845446 SEFVVSHTR 9 Unmodified _SEFVVSHTR_ 0 0 0 REV__ZNF516|p.A1119T|1|0.19|ENSG00000101493|chr18:76371476-76371476|C/T|missense_variant REV__ZNF516|p.A1119T|1|0.19|ENSG00000101493|chr18:76371476-76371476|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 531.2744140625 2 531.272355 1060.53016 NaN NaN NaN NaN NaN NaN NaN 166.9 1 162.11 161.61 162.61 -4.7898 0 0 0 0.23508 1 33588 33588 10.074 0 1 + 40577 25579 27061 27077 39902 39902 0.0023138429510254355 SEGAEGLG 8 Unmodified _SEGAEGLG_ 0 0 0 ENST00000461141.5_1_3:183952309-183959823:+|nuORF;ENSG00000145198|ENST00000691901|VWA5B2 ENST00000461141.5_1_3:183952309-183959823:+|nuORF ENST00000461141.5_1_3:183952309-183959823:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20721435546875 2 360.163951 718.313348 NaN NaN NaN NaN NaN NaN NaN 128.54 1 123.73 123.23 124.23 -4.817 0 0 0 0.23749 1 24675 24675 1.7423 1.1154 1 40578 4596 27062 27078 39903 39903 -0.057075912584537036 SEGATSNEDDA 11 Unmodified _SEGATSNEDDA_ 0 0 0 REV__SCN5A|p.Y1009Tfs*136|3|0.35|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant REV__SCN5A|p.Y1009Tfs*136|3|0.35|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7721557617188 2 548.207272 1094.39999 0.13503 7.4024E-05 -1.0043 -0.00055054 -0.86923 -0.00047652 548.2068290703609 36.797 0.82036 34.449 34.14 34.96 -2.3479 38 23 3 0 0 0 0.91597 1 6486 6486 7.1017 3.8204 1 743710 + 40579 18872 27063 27079 39904 39904 -0.14343301285225607 SEGCCFFW 8 Unmodified _SEGCCFFW_ 0 0 0 ENST00000431908.5_1_6:31504422-31508408:-|nuORF ENST00000431908.5_1_6:31504422-31508408:-|nuORF ENST00000431908.5_1_6:31504422-31508408:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2560729980469 2 489.677856 977.34116 0.36104 0.00017679 -0.4295 -0.00021032 -0.068456 -3.3521E-05 489.6777406882564 50.579 0.51123 50.579 50.337 50.848 0 26 14 3 0 0 0 0.98792 1 9586 9586 5.2307 0.90143 1 978610 40580 9790 27064 27080 39905 39905 -0.14841727594250642 SEGCDEVDSH 10 Unmodified _SEGCDEVDSH_ 0 0 0 REV__HIVEP1|p.S492C|1|0.69|ENSG00000095951|chr6:12121269-12121269|A/T|missense_variant REV__HIVEP1|p.S492C|1|0.69|ENSG00000095951|chr6:12121269-12121269|A/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.211181640625 3 359.797832 1076.37167 0.23435 8.4318E-05 0.50511 0.00018174 0.73945 0.00026605 359.7993462925874 33.2 0.45667 31.053 30.865 31.321 -2.1468 31 12 4 0 0 0 0.91149 1 5752 5752 1.7423 0.14999 1 1378300 + 40581 23635 27065 27081 39906 39906 -0.16346322466142738 SEGCDNCRY 9 Unmodified _SEGCDNCRY_ 0 0 0 REV__ZNF774|p.G371Qfs*57|1|0.06|ENSG00000196391|chr15:90360932-90360933|-/AC|frameshift_variant REV__ZNF774|p.G371Qfs*57|1|0.06|ENSG00000196391|chr15:90360932-90360933|-/AC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6854858398438 2 523.686941 1045.35933 NaN NaN NaN NaN NaN NaN NaN 53.842 1 50.706 50.206 51.206 -3.1352 0 0 0 0.23508 1 9916 9916 7.9102 1.187 1 + 40582 19242 27066 27082 39907 39907 -0.16153637410184274 SEGEGYTSI 9 Unmodified _SEGEGYTSI_ 0 0 0 REV__ENSG00000167658|ENST00000309311|EEF2 REV__ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 944.4107055664062 1 942.405083 941.397806 0.32414 0.00030547 -0.1141 -0.00010753 0.21003 0.00019793 942.4050027220113 38.287 1.1133 35.882 35.397 36.51 -2.4049 66 31 3 0 0 0 0.62314 1 6801 6801 11.64 2.2929 1 3784700 + 40583 17953 27067 27083 39908 39908 -0.07523685232365551 SEGEGYTSI 9 Unmodified _SEGEGYTSI_ 0 0 0 REV__ENSG00000167658|ENST00000309311|EEF2 REV__ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 942.405083 941.397806 0.56233 0.00052994 -0.49245 -0.00046409 0.069883 6.5859E-05 942.4044741650738 35.847 1.1459 35.847 35.45 36.595 0 -0.0019911 -0.00034086 NaN 11.64 55 32 2 NaN NaN NaN NaN 0 NaN NaN 0 4039800 + 40584 17953 27067 27083 -0.07523685232365551 SEGEGYTSI 9 Unmodified _SEGEGYTSI_ 0 0 0 REV__ENSG00000167658|ENST00000309311|EEF2 REV__ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 942.405083 941.397806 -0.22487 -0.00021192 0.18952 0.0001786 -0.035355 -3.3319E-05 942.4051761860786 38.277 1.1073 35.808 35.369 36.477 -2.4688 -0.040744 0.00030183 NaN 11.64 55 31 2 NaN NaN NaN NaN 0 NaN NaN 0 4810000 + 40585 17953 27067 27083 -0.07523685232365551 SEGEGYTSI 9 Unmodified _SEGEGYTSI_ 0 0 0 REV__ENSG00000167658|ENST00000309311|EEF2 REV__ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 942.405083 941.397806 0.29306 0.00027619 -0.20312 -0.00019142 0.089944 8.4764E-05 942.4048094074599 38.3 1.0995 35.858 35.38 36.479 -2.4419 0.009572 -6.8196E-05 NaN 11.64 64 30 3 NaN NaN NaN NaN 0 NaN NaN 0 5341100 + 40586 17953 27067 27083 -0.07523685232365551 SEGGGCCH 8 Unmodified _SEGGGCCH_ 0 0 0 ENST00000453656.6_1_6:32122291-32122825:+|nuORF ENST00000453656.6_1_6:32122291-32122825:+|nuORF ENST00000453656.6_1_6:32122291-32122825:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2158203125 2 375.120706 748.226858 NaN NaN NaN NaN NaN NaN NaN 98.392 1 94.259 93.759 94.759 -4.1326 0 0 0 0.21486 1 19320 19320 0.69038 0.69038 1 40587 10007 27068 27084 39909 39909 -0.15732617356331957 SEGGITCS 8 Unmodified _SEGGITCS_ 0 0 0 ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000557199.1_1_12:56740507-56742527:-|nuORF ENST00000556539.5_1_12:56737175-56743495:-|nuORF ENST00000556539.5_1_12:56737175-56743495:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 377.1964111328125 2 377.157811 752.301069 NaN NaN NaN NaN NaN NaN NaN 66.004 1 62.721 62.221 63.221 -3.2832 0 0 0 0.23366 1 12417 12417 0.0082765 0 1 40588 6082 27069 27085 39910 39910 -0.08498950993168819 SEGGRNSRV 9 Unmodified _SEGGRNSRV_ 0 0 0 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2445068359375 2 481.244129 960.473705 NaN NaN NaN NaN NaN NaN NaN 25.128 1 23.274 22.774 23.774 -1.8534 0 0 0 0.19657 1 4116 4116 4.897 4.4887 1 40589 3905 27070 27086 39911 39911 -0.00811243541568274 SEGHAPVEM 9 Unmodified _SEGHAPVEM_ 0 0 0 REV__STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant REV__STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74267578125 2 478.710742 955.406931 -0.073482 -3.5177E-05 0.441 0.00021111 0.36752 0.00017594 478.71093902050956 53.514 1.3439 53.514 53.075 54.419 0 76 37 3 0 0 0 0.25702 1 10317 10317 34.102 6.4736 1 10093000 + 40590 24744 27071 27087 39912 39912 -0.07255615147687422 SEGHAPVEM 9 Unmodified _SEGHAPVEM_ 0 0 0 REV__STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant REV__STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7243347167969 2 478.710742 955.406931 -0.15236 -7.2935E-05 0.57561 0.00027555 0.42325 0.00020261 478.71098889669423 56.096 1.3373 53.201 52.863 54.2 -2.8944 79 38 3 0 0 0 0.12183 1 10905 10905 48.346 13.944 1 19082000 + 40591 24744 27071 27087 39913 39913 -0.07255615147687422 SEGHAPVEM 9 Unmodified _SEGHAPVEM_ 0 0 0 REV__STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant REV__STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.723876953125 2 478.710742 955.406931 0.065596 3.1401E-05 0.5551 0.00026573 0.6207 0.00029713 478.71103761955686 56.299 1.1907 53.109 52.67 53.861 -3.1895 66 33 3 0 0 0 0.38188 1 10565 10565 26.884 5.137 1 17084000 + 40592 24744 27071 27087 39914 39914 -0.07255615147687422 SEGHVFIAP 9 Unmodified _SEGHVFIAP_ 0 0 0 nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2 nc|ENSG00000007402|Q9NY47-4|CACNA2D2 nc|ENSG00000007402|Q9NY47-4|CACNA2D2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7271728515625 2 478.745442 955.476331 0.23497 0.00011249 -0.65189 -0.00031209 -0.41692 -0.0001996 478.7451846194522 85.85 0.4931 81.9 81.629 82.122 -3.9503 22 13 3 0 0 0 0.28819 1 16322 16322 32.305 3.8186 1 1069500 40593 1025 27072 27088 39915 39915 -0.003187881366216061 SEGHVFIAP 9 Unmodified _SEGHVFIAP_ 0 0 0 nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2 nc|ENSG00000007402|Q9NY47-4|CACNA2D2 nc|ENSG00000007402|Q9NY47-4|CACNA2D2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.745442 955.476331 0.23497 0.00011249 -0.65189 -0.00031209 -0.41692 -0.0001996 478.7451846194522 85.85 0.4931 81.9 81.629 82.122 -3.9503 -0.04134 -0.00032955 NaN 32.305 22 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1069500 40594 1025 27072 27088 -0.003187881366216061 SEGIKLNI 8 Unmodified _SEGIKLNI_ 0 0 0 REV__PCDHGB2|p.T298Nfs*9|2|0.32|ENSG00000253910|chr5:141361021-141361022|-/A|frameshift_variant REV__PCDHGB2|p.T298Nfs*9|2|0.32|ENSG00000253910|chr5:141361021-141361022|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21600341796875 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 115.65 1 111.3 110.8 111.8 -4.3469 0 0 0 0.21486 1 22264 22264 7.9102 0 1 + 40595 19842 27073 27089 39916 39916 0.055383825231729134 SEGKMELFF 9 Unmodified _SEGKMELFF_ 0 0 0 REV__RUFY4|p.K251M|1|0.16|ENSG00000188282|chr2:218075244-218075244|A/T|missense_variant REV__RUFY4|p.K251M|1|0.16|ENSG00000188282|chr2:218075244-218075244|A/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7896118164062 2 544.260068 1086.50558 -0.045436 -2.4729E-05 1.7755 0.00096631 1.73 0.00094158 544.7632143747986 111.77 0.21346 107.34 107.27 107.48 -4.4231 6 5 2 0 0 0 0.23959 1 22036 22036 1.6919 0.8167 1 442670 + 40596 24586 27074 27090 39917 39917 -0.034210119026511165 SEGLAIVTK 9 Unmodified _SEGLAIVTK_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60;TROVE2|p.K316Rfs*10|1|0.16|ENSG00000116747|chr1:193076641-193076641|A/-|frameshift_variant nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 459.2688903808594 2 459.26875 916.522947 NaN NaN NaN NaN NaN NaN NaN 154.62 1 149.37 148.87 149.87 -5.2526 0 0 0 0.22251 1 29980 29980 16.942 0 1 40597 2950 27075 27091 39918 39918 0.06134651694662807 SEGLEDAVH 9 Unmodified _SEGLEDAVH_ 0 0 0 INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2 INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7219543457031 2 478.719621 955.42469 0.41591 0.0001991 1.966 0.00094117 2.3819 0.0011403 478.7203629956438 118.65 0.77334 114.24 113.89 114.66 -4.4088 30 21 2 0 0 0 0.38188 1 22787 22787 26.884 0 1 1530900 40598 7535 27076 27092 39919 39919 -0.05480576621187083 SEGLIDAQF 9 Unmodified _SEGLIDAQF_ 0 0 0 REV__tr|U7T3R4|U7T3R4_FUSNUGlycerolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glpKPE=3SV=1 REV__tr|U7T3R4|U7T3R4_FUSNUGlycerolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glpKPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.254150390625 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 125.34 1 120.57 120.07 121.07 -4.7681 0 0 0 0.070386 1 24058 24058 43.858 5.8843 1 + 40599 25373 27077 27093 39920 39920 -0.024268155817139814 SEGLLKFW 8 Unmodified _SEGLLKFW_ 0 0 0 ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36 ENST00000505303.5_1_5:110428043-110447004:+|nuORF ENST00000505303.5_1_5:110428043-110447004:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.268798828125 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 78.508 1 75.044 74.544 75.544 -3.4633 0 0 0 0.21486 1 15327 15327 12.532 1.7076 1 40600 3889 27078 27094 39921 39921 0.027349729028628644 SEGLQFQN 8 Unmodified _SEGLQFQN_ 0 0 0 HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant;ENSG00000095951|ENST00000379388|HIVEP1 HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5373840332031 2 461.716882 921.41921 NaN NaN NaN NaN NaN NaN NaN 75.444 1 72.029 71.529 72.529 -3.4151 0 0 0 0.21486 1 14714 14714 12.532 0 1 40601 1870 27079 27095 39922 39922 -0.04464255412995044 SEGNLLSGP 9 Unmodified _SEGNLLSGP_ 0 0 0 tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1 tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1 tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2176208496094 2 437.219257 872.423961 0.10578 4.6249E-05 -0.085915 -3.7564E-05 0.019865 8.6852E-06 437.21922158631816 35.655 1.2131 33.402 33.09 34.303 -2.2527 74 34 3 0 0 0 0.6329 1 6437 6437 10.824 0.75 1 3794300 40602 25907 27080 27096 39923 39923 -0.017353712702401936 SEGPLIDKG 9 Unmodified _SEGPLIDKG_ 0 0 0 ENSG00000013523|ENST00000251089|ANGEL1 ENSG00000013523|ENST00000251089|ANGEL1 ENSG00000013523|ENST00000251089|ANGEL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23004150390625 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 19.299 1 17.902 17.402 18.402 -1.3966 0 0 0 0.19669 1 3177 3177 0.40827 0 1 40603 1101 27081 27097 39924 39924 0.010254882809135779 SEGPPRMSP 9 Unmodified _SEGPPRMSP_ 0 0 0 nc|ENSG00000204842|Q99700-2|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;nc|ENSG00000204842|Q99700-5|ATXN2 nc|ENSG00000204842|Q99700-2|ATXN2 nc|ENSG00000204842|Q99700-2|ATXN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74072265625 2 479.226559 956.438566 -0.0062391 -2.99E-06 0.20634 9.8882E-05 0.2001 9.5892E-05 479.2266340830737 36.587 1.1936 36.587 35.999 37.192 0 57 33 2 0 0 0 0.545 1 6792 6792 36.506 29.217 1 3810100 40604 7613 27082 27098 39925 39925 -0.041396223937454124 SEGPPRMSP 9 Unmodified _SEGPPRMSP_ 0 0 0 nc|ENSG00000204842|Q99700-2|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;nc|ENSG00000204842|Q99700-5|ATXN2 nc|ENSG00000204842|Q99700-2|ATXN2 nc|ENSG00000204842|Q99700-2|ATXN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7232971191406 2 479.226559 956.438566 0.030437 1.4586E-05 0.1686 8.0799E-05 0.19904 9.5386E-05 479.22659660263344 39.162 1.2966 36.72 36.125 37.421 -2.4419 61 36 2 0 0 0 0.22356 1 7005 7005 49.527 27.781 1 4562400 40605 7613 27082 27098 39926 39926 -0.041396223937454124 SEGPPRMSP 9 Unmodified _SEGPPRMSP_ 0 0 0 nc|ENSG00000204842|Q99700-2|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;nc|ENSG00000204842|Q99700-5|ATXN2 nc|ENSG00000204842|Q99700-2|ATXN2 nc|ENSG00000204842|Q99700-2|ATXN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72283935546875 2 479.226559 956.438566 0.13423 6.4326E-05 0.1047 5.0175E-05 0.23893 0.0001145 479.2265634033209 39.21 1.1904 36.806 36.162 37.353 -2.4049 58 33 2 0 0 0 0.13797 1 6963 6963 57.249 28.762 1 2844900 40606 7613 27082 27098 39927 39927 -0.041396223937454124 SEGQARQGF 9 Unmodified _SEGQARQGF_ 0 0 0 ENST00000450185.5_1_2:73225858-73250341:-|nuORF ENST00000450185.5_1_2:73225858-73250341:-|nuORF ENST00000450185.5_1_2:73225858-73250341:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26416015625 2 490.23323 978.451907 0.18718 9.1759E-05 2.8242 0.0013845 3.0114 0.0014763 490.2348608656508 61.254 0.31137 57.885 57.62 57.931 -3.3694 12 8 3 0 0 0 0.80521 1 11372 11372 6.7232 0 1 793260 40607 9971 27083 27099 39928 39928 -0.038180482901452706 SEGQPPPSY 9 Unmodified _SEGQPPPSY_ 0 0 0 ENSG00000143217|ENST00000368012|NECTIN4;nc|ENSG00000143217|Q96NY8-2|NECTIN4 ENSG00000143217|ENST00000368012|NECTIN4 ENSG00000143217|ENST00000368012|NECTIN4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2525329589844 2 481.216714 960.418876 NaN NaN NaN NaN NaN NaN NaN 82.868 1 82.868 82.368 83.368 0 0 0 0 0.23508 1 16153 16153 12.532 3.1841 1 40608 4463 27084 27100 39929 39929 -0.0629167513285438 SEGREKTI 8 Unmodified _SEGREKTI_ 0 0 0 REV__ENSG00000212710|ENST00000391403|CTAGE1 REV__ENSG00000212710|ENST00000391403|CTAGE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24530029296875 2 460.245806 918.47706 0.28136 0.00012949 -0.069617 -3.2041E-05 0.21174 9.7452E-05 460.2456666405888 36.88 0.38373 36.88 36.743 37.126 0 14 10 2 0 0 0 0.71273 1 6853 6853 12.532 0 1 972820 + 40609 19630 27085 27101 39930 39930 0.014560065124328503 SEGRLRCEH 9 Unmodified _SEGRLRCEH_ 0 0 0 REV__ENST00000604988.1_1_6:338073-350865:+|nuORF REV__ENST00000604988.1_1_6:338073-350865:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7759399414062 2 543.759089 1085.50363 0.090769 4.9356E-05 -0.34304 -0.00018653 -0.25228 -0.00013718 543.7589235231668 50.116 0.38429 47.235 47.079 47.463 -2.8811 15 10 2 0 0 0 0.49624 1 9553 9553 0.073264 0 1 1178700 + 40610 15307 27086 27102 39931 39931 -0.03570627867907206 SEGRSSEPL 9 Unmodified _SEGRSSEPL_ 0 0 0 REV__ENST00000514271.2_1_12:122821255-122825325:-|nuORF REV__ENST00000514271.2_1_12:122821255-122825325:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24468994140625 2 481.232896 960.451239 0.12747 6.1343E-05 -0.012197 -5.8698E-06 0.11527 5.5473E-05 481.2331582178105 38.155 0.79995 35.75 35.569 36.369 -2.4049 36 22 2 0 0 0 0.42844 1 6836 6836 24.021 2.2739 1 1740400 + 40611 22575 27087 27103 39932 39932 -0.030568877298492225 SEGRTFEM 8 Unmodified _SEGRTFEM_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7236633300781 2 478.710742 955.406931 -0.073482 -3.5177E-05 0.441 0.00021111 0.36752 0.00017594 478.71093902050956 53.514 1.3439 53.514 53.075 54.419 0 76 37 3 0 0 0 0.38197 1 10202 10202 57.722 17.765 1 10093000 40612 3982;10375 27088 27104 39933 39933 -0.07255615147687422 SEGRTFEM 8 Unmodified _SEGRTFEM_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73779296875 2 478.710742 955.406931 -0.15236 -7.2935E-05 0.57561 0.00027555 0.42325 0.00020261 478.71098889669423 56.096 1.3373 53.201 52.863 54.2 -2.8944 79 38 3 0 0 0 8448 1 10937 10937 10.074 5.1769 1 19082000 40613 3982;10375 27088 27104 39934 39934 -0.07255615147687422 SEGRTFEM 8 Unmodified _SEGRTFEM_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7236633300781 2 478.710742 955.406931 0.065596 3.1401E-05 0.5551 0.00026573 0.6207 0.00029713 478.71103761955686 56.299 1.1907 53.109 52.67 53.861 -3.1895 66 33 3 0 0 0 0.4122 1 10418 10418 45.7 3.6051 1 17084000 40614 3982;10375 27088 27104 39935 39935 -0.07255615147687422 SEGRTFEM 8 Unmodified _SEGRTFEM_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7423095703125 2 478.710742 955.406931 0.010935 5.2349E-06 0.60616 0.00029017 0.61709 0.00029541 478.7110409743577 56.285 1.5184 53.108 52.622 54.14 -3.1761 75 42 3 0 0 0 0.5707 3 10661 10411;10454;10661 45.004 26.39 1 11936000 40615 3982;10375 27088 27104 39936;39937;39938 39938 -0.07255615147687422 SEGSVIISQ 9 Unmodified _SEGSVIISQ_ 0 0 0 REV__ENSG00000128833|ENST00000261839|MYO5C;REV__ENSG00000167306|ENST00000285039|MYO5B;REV__MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant REV__ENSG00000128833|ENST00000261839|MYO5C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23870849609375 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 70.037 1 66.826 66.326 67.326 -3.211 0 0 0 0.18272 1 13625 13625 1.6919 1.4404 1 + 40616 15936;17916;19344 27089 27105 39939 39939 0.0033318441828669165 SEGTHISMH 9 Unmodified _SEGTHISMH_ 0 0 0 REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.1802978515625 3 333.48352 997.428729 -0.24067 -8.0258E-05 -1.0169 -0.00033913 -1.2576 -0.00041939 333.48325572182614 79.469 0.81398 75.959 75.589 76.403 -3.5102 49 22 3 0 0 0 0.87918 1 15456 15456 5.2969 0 1 4469600 + 40617 14201 27090 27106 39940 39940 -0.07008810399122467 SEGTHISMH 9 Unmodified _SEGTHISMH_ 0 0 0 REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 333.48352 997.428729 -0.21815 -7.2748E-05 -0.95161 -0.00031735 -1.1698 -0.00039009 333.4831978653923 75.845 0.83357 75.845 75.476 76.31 0 -0.16074 -0.00019831 NaN 5.2969 57 23 3 NaN NaN NaN NaN 0 NaN NaN 0 10947000 + 40618 14201 27090 27106 -0.07008810399122467 SEGTHISMH 9 Unmodified _SEGTHISMH_ 0 0 0 REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 333.48352 997.428729 -0.049429 -1.6484E-05 -0.88645 -0.00029562 -0.93588 -0.0003121 333.4831904366908 79.932 0.81561 76.127 75.716 76.532 -3.8048 0.12079 -0.00013312 NaN 5.2969 52 22 3 NaN NaN NaN NaN 0 NaN NaN 0 7916700 + 40619 14201 27090 27106 -0.07008810399122467 SEGTHISMH 9 Unmodified _SEGTHISMH_ 0 0 0 REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 333.48352 997.428729 -0.80574 -0.0002687 -0.26431 -8.8142E-05 -1.07 -0.00035684 333.483445050906 79.77 0.86751 76.094 75.727 76.594 -3.676 0.087424 0.00048931 NaN 5.2969 63 24 4 NaN NaN NaN NaN 0 NaN NaN 0 7488800 + 40620 14201 27090 27106 -0.07008810399122467 SEGVLLFGH 9 Unmodified _SEGVLLFGH_ 0 0 0 nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4 nc|ENSG00000128815|Q6ZS81-5|WDFY4 nc|ENSG00000128815|Q6ZS81-5|WDFY4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2345886230469 2 479.753267 957.491981 0.05911 2.8358E-05 -0.021417 -1.0275E-05 0.037693 1.8083E-05 479.7532291007727 97.873 1.288 93.775 93.081 94.369 -4.0978 111 36 4 0 0 0 0.6797 1 19303 19303 11.64 0 1 20584000 40621 3542 27091 27107 39941 39941 0.01153498380426754 SEGWKVAE 8 Unmodified _SEGWKVAE_ 0 0 0 REV__ENST00000491030.1_1_1:192128434-192129571:+|nuORF REV__ENST00000491030.1_1_1:192128434-192129571:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7646179199219 2 453.2218 904.429047 -0.0085119 -3.8578E-06 0.81733 0.00037043 0.80882 0.00036657 453.2222212620106 41.771 0.87611 39.166 38.627 39.503 -2.606 50 24 3 0 0 0 0.95515 1 7538 7538 6.7232 0 1 2663700 + 40622 17041 27092 27108 39942 39942 -0.026990674076273535 SEGWRGEV 8 Unmodified _SEGWRGEV_ 0 0 0 REV__ENST00000307729.11_1_10:21823315-21823435:+|nuORF REV__ENST00000307729.11_1_10:21823315-21823435:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2467956542969 2 460.217049 918.419545 NaN NaN NaN NaN NaN NaN NaN 20.639 1 18.918 18.418 19.418 -1.7211 0 0 0 0.21486 1 3185 3185 7.9102 0 1 + 40623 20452 27093 27109 39943 39943 -0.04292835693138386 SEHEAALL 8 Unmodified _SEHEAALL_ 0 0 0 nc|ENSG00000120658|Q8TC92-2|ENOX1;ENSG00000120658|ENST00000690772|ENOX1 nc|ENSG00000120658|Q8TC92-2|ENOX1 nc|ENSG00000120658|Q8TC92-2|ENOX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 435.20159912109375 2 435.2218 868.429047 0.049176 2.1403E-05 -0.050735 -2.2081E-05 -0.001559 -6.785E-07 435.2217301105764 59.949 1.536 56.636 55.961 57.497 -3.3139 67 43 2 0 0 0 8448 1 11070 11070 3.2813 0 1 1804600 40624 3143 27094 27110 39944 39944 -0.01043067407624676 SEHEFKENM 9 Unmodified _SEHEFKENM_ 0 0 0 SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant;nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1;SFMBT1|p.A664Pfs*50|1|0.1|ENSG00000163935|chr3:52907651-52907651|T/-|frameshift_variant SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3321533203125 2 575.745313 1149.47607 0.69251 0.00039871 -0.44571 -0.00025661 0.2468 0.00014209 575.7450615734548 28.966 0.5595 27.01 26.741 27.301 -1.9561 34 15 3 0 0 0 0.00017431 2 5200 5170;5200 121.35 67.513 1 2342500 40625 5485 27095 27111 39945;39946 39946 -0.09268575918781607 SEHEFKENM 9 Unmodified _SEHEFKENM_ 0 0 0 SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant;nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1;SFMBT1|p.A664Pfs*50|1|0.1|ENSG00000163935|chr3:52907651-52907651|T/-|frameshift_variant SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3290405273438 2 575.745313 1149.47607 0.39603 0.00022801 -0.24106 -0.00013879 0.15497 8.9223E-05 575.7451751994321 28.778 0.55805 27.023 26.77 27.328 -1.7552 35 15 3 0 0 0 0.043105 1 4849 4849 74.2 46.571 1 2668400 40626 5485 27095 27111 39947 39947 -0.09268575918781607 SEHEFKENM 9 Unmodified _SEHEFKENM_ 0 0 0 SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant;nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1;SFMBT1|p.A664Pfs*50|1|0.1|ENSG00000163935|chr3:52907651-52907651|T/-|frameshift_variant SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3365478515625 2 575.745313 1149.47607 0.40723 0.00023446 -0.11939 -6.874E-05 0.28783 0.00016572 575.7453062144642 28.954 0.5546 26.958 26.66 27.215 -1.9962 32 15 3 0 0 0 0.30618 1 4873 4873 31.268 10.854 1 2012000 40627 5485 27095 27111 39948 39948 -0.09268575918781607 SEHEFKENM 9 Unmodified _SEHEFKENM_ 0 0 0 SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant;nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1;SFMBT1|p.A664Pfs*50|1|0.1|ENSG00000163935|chr3:52907651-52907651|T/-|frameshift_variant SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.745313 1149.47607 0.35006 0.00020155 0.17706 0.00010194 0.52712 0.00030349 575.7452424117396 27.053 0.41062 27.053 26.839 27.25 0 0.041906 0.00040746 NaN 121.35 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2139500 40628 5485 27095 27111 -0.09268575918781607 SEHEGFLRA 9 Unmodified _SEHEGFLRA_ 0 0 0 nc|ENSG00000105290|P51693|APLP1;ENSG00000105290|ENST00000221891|APLP1 nc|ENSG00000105290|P51693|APLP1 nc|ENSG00000105290|P51693|APLP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6961059570312 2 523.256705 1044.49886 0.48932 0.00025604 -0.72424 -0.00037897 -0.23493 -0.00012293 523.2562780766937 45.127 0.59865 45.127 44.849 45.448 0 36 16 3 0 0 0 0.031786 1 8492 8492 79.596 45.494 1 3026800 40629 2295 27096 27112 39949 39949 -0.021611887390008633 SEHEGFLRA 9 Unmodified _SEHEGFLRA_ 0 0 0 nc|ENSG00000105290|P51693|APLP1;ENSG00000105290|ENST00000221891|APLP1 nc|ENSG00000105290|P51693|APLP1 nc|ENSG00000105290|P51693|APLP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6765747070312 2 523.256705 1044.49886 -0.59219 -0.00030987 -0.65188 -0.0003411 -1.2441 -0.00065097 523.256395960913 47.859 0.56536 44.917 44.651 45.216 -2.9421 29 15 2 0 0 0 0.072372 1 8711 8711 63.961 37.077 1 2970100 40630 2295 27096 27112 39950 39950 -0.021611887390008633 SEHEGFLRA 9 Unmodified _SEHEGFLRA_ 0 0 0 nc|ENSG00000105290|P51693|APLP1;ENSG00000105290|ENST00000221891|APLP1 nc|ENSG00000105290|P51693|APLP1 nc|ENSG00000105290|P51693|APLP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.691650390625 2 523.256705 1044.49886 -0.036309 -1.8999E-05 -1.1941 -0.00062482 -1.2304 -0.00064382 523.2560512325978 47.929 0.62337 44.979 44.602 45.226 -2.9499 37 17 3 0 0 0 0.035659 1 8773 8773 83.429 61.682 1 2523200 40631 2295 27096 27112 39951 39951 -0.021611887390008633 SEHEGFLRA 9 Unmodified _SEHEGFLRA_ 0 0 0 nc|ENSG00000105290|P51693|APLP1;ENSG00000105290|ENST00000221891|APLP1 nc|ENSG00000105290|P51693|APLP1 nc|ENSG00000105290|P51693|APLP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.256705 1044.49886 -0.26286 -0.00013754 -0.50247 -0.00026292 -0.76533 -0.00040046 523.2564599538446 47.834 0.60149 44.965 44.635 45.236 -2.869 -0.031713 0.00031844 NaN 79.596 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3158300 40632 2295 27096 27112 -0.021611887390008633 SEHEVSEII 9 Unmodified _SEHEVSEII_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant;ENST00000494460.1_1_12:124914089-124915180:-|nuORF nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279052734375 2 521.756204 1041.49785 0.37091 0.00019352 -0.68988 -0.00035995 -0.31897 -0.00016642 521.7558719051748 83.441 0.43024 83.441 83.185 83.615 0 20 11 2 0 0 0 0.35443 1 16256 16256 28.487 0 1 1952000 40633 7273 27097 27113 39952 39952 -0.021234478985661553 SEHEVSEII 9 Unmodified _SEHEVSEII_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant;ENST00000494460.1_1_12:124914089-124915180:-|nuORF nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2575073242188 2 521.756204 1041.49785 0.17005 8.8726E-05 0.041833 2.1827E-05 0.21189 0.00011055 521.7561877386725 86.996 0.42363 83.267 83.048 83.472 -3.7289 17 11 2 0 0 0 0.60698 1 16661 16661 7.2892 0 1 1449000 40634 7273 27097 27113 39953 39953 -0.021234478985661553 SEHGRWQKKF 10 Unmodified _SEHGRWQKKF_ 0 0 0 ENST00000449473.2_1_1:101552540-101552798:+|nuORF ENST00000449473.2_1_1:101552540-101552798:+|nuORF ENST00000449473.2_1_1:101552540-101552798:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.8952331542969 3 434.894911 1301.6629 NaN NaN NaN NaN NaN NaN NaN 23.533 1 21.979 21.479 22.479 -1.5532 0 0 0 0.22588 1 4064 4064 1.9064 0.57673 1 40635 9965 27098 27114 39954 39954 0.024138287517189383 SEHLWERL 8 Unmodified _SEHLWERL_ 0 0 0 ENST00000290551.4_1_1:203277738-203278125:+|nuORF ENST00000290551.4_1_1:203277738-203278125:+|nuORF ENST00000290551.4_1_1:203277738-203278125:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0733337402344 3 357.185691 1068.53524 -0.22465 -8.0242E-05 0.058394 2.0858E-05 -0.16626 -5.9385E-05 357.1856581085365 63.984 0.55884 60.986 60.661 61.219 -2.9975 35 15 3 0 0 0 1.0265 1 12384 12384 1.6526 0 1 2367200 40636 8474 27099 27115 39955 39955 0.0037168815772474773 SEHPLLSEP 9 Unmodified _SEHPLLSEP_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.256591796875 2 504.753464 1007.49238 -0.14526 -7.3319E-05 0.1739 8.7775E-05 0.028641 1.4457E-05 504.75357929097714 69.938 1.0283 66.759 66.223 67.251 -3.1796 59 28 3 0 0 0 0.79204 1 13686 13686 11.64 0 1 4475600 40637 4201 27100 27116 39956 39956 -0.011071266903627475 SEHPLLSEP 9 Unmodified _SEHPLLSEP_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 504.753464 1007.49238 -0.13052 -6.5882E-05 -0.18474 -9.325E-05 -0.31527 -0.00015913 504.7534414281735 66.689 0.98811 66.689 66.345 67.333 0 -0.013992 -0.00021846 NaN 11.64 49 27 3 NaN NaN NaN NaN 0 NaN NaN 0 2679600 40638 4201 27100 27116 -0.011071266903627475 SEHPLLSEP 9 Unmodified _SEHPLLSEP_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 504.753464 1007.49238 0.093954 4.7424E-05 -0.019576 -9.8809E-06 0.074378 3.7543E-05 504.75355412701987 70.242 0.98776 66.662 66.242 67.23 -3.5798 -0.041203 -5.172E-05 NaN 11.64 60 27 3 NaN NaN NaN NaN 0 NaN NaN 0 3800000 40639 4201 27100 27116 -0.011071266903627475 SEHQARKY 8 Unmodified _SEHQARKY_ 0 0 0 MYO3A|p.R958H|2|0.39|ENSG00000095777|chr10:26157389-26157389|G/A|missense_variant MYO3A|p.R958H|2|0.39|ENSG00000095777|chr10:26157389-26157389|G/A|missense_variant MYO3A|p.R958H|2|0.39|ENSG00000095777|chr10:26157389-26157389|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 509.28570556640625 2 509.756872 1017.49919 -0.16699 -8.5124E-05 -1.4689 -0.00074876 -1.6358 -0.00083388 509.75630401180155 45.193 0.10686 42.327 42.255 42.362 -2.8665 4 2 2 0 0 0 1.0147 1 8185 8185 5.2307 3.1709 1 165920 40640 12191 27101 27117 39957 39957 -0.008857690191462098 SEHQGVVY 8 Unmodified _SEHQGVVY_ 0 0 0 ENSG00000104213|ENST00000251630|PDGFRL ENSG00000104213|ENST00000251630|PDGFRL ENSG00000104213|ENST00000251630|PDGFRL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2465515136719 2 459.719424 917.424296 -0.082172 -3.7776E-05 0.63472 0.00029179 0.55254 0.00025401 459.719599701831 33.463 0.34944 31.145 30.903 31.252 -2.3175 18 9 2 0 0 0 0.31324 1 6095 6095 36.127 7.6402 1 739220 40641 2222 27102 27118 39958 39958 -0.03771951550368158 SEHQGVVY 8 Unmodified _SEHQGVVY_ 0 0 0 ENSG00000104213|ENST00000251630|PDGFRL ENSG00000104213|ENST00000251630|PDGFRL ENSG00000104213|ENST00000251630|PDGFRL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2368469238281 2 459.719424 917.424296 0.4082 0.00018766 -0.037218 -1.711E-05 0.37099 0.00017055 459.7192156461966 33.318 0.44325 31.102 30.91 31.353 -2.2158 16 12 2 0 0 0 0.21714 1 5791 5791 43.858 13.633 1 669680 40642 2222 27102 27118 39959 39959 -0.03771951550368158 SEHSHSTTLP 10 Unmodified _SEHSHSTTLP_ 0 0 0 ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4 ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7765502929688 2 548.256902 1094.49925 1.0731 0.00058832 -0.76977 -0.00042203 0.3033 0.00016629 548.2563907433786 23.81 1.1179 22.257 21.834 22.952 -1.5532 80 31 3 0 0 0 0.21256 1 4149 4149 41.84 21.386 1 2290000 40643 3731 27103 27119 39960 39960 -0.04421813809813102 SEHSHSTTLP 10 Unmodified _SEHSHSTTLP_ 0 0 0 ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4 ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7766723632812 2 548.256902 1094.49925 -0.0043238 -2.3706E-06 0.23595 0.00012936 0.23163 0.00012699 548.2569819027633 23.674 1.1469 22.22 21.818 22.965 -1.4535 72 32 3 0 0 0 0.54036 1 3819 3819 30.637 10.183 1 2310900 40644 3731 27103 27119 39961 39961 -0.04421813809813102 SEIADLSNI 9 Unmodified _SEIADLSNI_ 0 0 0 ENSG00000138442|ENST00000261015|WDR12 ENSG00000138442|ENST00000261015|WDR12 ENSG00000138442|ENST00000261015|WDR12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2434387207031 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 137.73 1 132.81 132.31 133.31 -4.9216 0 0 0 0.13613 1 26478 26478 32.305 6.9062 1 40645 4171 27104 27120 39962 39962 -0.0054283292729451205 SEIDMSVKA 9 Unmodified _SEIDMSVKA_ 0 0 0 ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416785-113418150:+|nuORF ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000144136|ENST00000272542|SLC20A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2633361816406 2 490.241875 978.469197 -0.12938 -6.3428E-05 0.24028 0.00011779 0.11089 5.4365E-05 490.2420461640187 63.869 1.2546 63.869 63.26 64.515 0 99 35 5 0 0 0 0.028103 1 12309 12309 110.67 51.996 1 65012000 40646 4544 27105 27121 39963 39963 -0.02089888799343953 SEIDMSVKA 9 Unmodified _SEIDMSVKA_ 0 0 0 ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416785-113418150:+|nuORF ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000144136|ENST00000272542|SLC20A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2642517089844 2 490.241875 978.469197 0.089835 4.4041E-05 0.15137 7.4206E-05 0.2412 0.00011825 490.2419416546403 66.744 1.4604 63.635 63.166 64.626 -3.1086 66 41 2 0 0 0 8.0306E-08 2 12884 12868;12884 149.91 68.301 1 129560000 40647 4544 27105 27121 39964;39965 39965 -0.02089888799343953 SEIDMSVKA 9 Unmodified _SEIDMSVKA_ 0 0 0 ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416785-113418150:+|nuORF ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000144136|ENST00000272542|SLC20A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26434326171875 2 490.241875 978.469197 0.38226 0.0001874 -0.26126 -0.00012808 0.121 5.9317E-05 490.2417896798537 67.159 1.3082 63.662 63.253 64.561 -3.4965 101 36 5 0 0 0 0.029747 1 12649 12649 89.401 34.627 1 96382000 40648 4544 27105 27121 39966 39966 -0.02089888799343953 SEIDMSVKA 9 Unmodified _SEIDMSVKA_ 0 0 0 ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416785-113418150:+|nuORF ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000144136|ENST00000272542|SLC20A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2636413574219 2 490.241875 978.469197 0.078289 3.8381E-05 0.05274 2.5855E-05 0.13103 6.4236E-05 490.24198122086545 67.027 1.4222 63.701 63.167 64.589 -3.3268 110 40 5 0 0 0 1.3661E-16 1 12599 12599 165.72 84.107 1 87582000 40649 4544 27105 27121 39967 39967 -0.02089888799343953 SEIDSGHLPGA 11 Unmodified _SEIDSGHLPGA_ 0 0 0 ENST00000310833.11_3_1:208070853-208070907:-|nuORF ENST00000310833.11_3_1:208070853-208070907:-|nuORF ENST00000310833.11_3_1:208070853-208070907:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2739868164062 2 541.759278 1081.504 0.21347 0.00011565 -0.73639 -0.00039895 -0.52292 -0.0002833 541.7584883813252 45.487 0.28499 42.646 42.439 42.724 -2.8409 13 7 3 0 0 0 0.83635 1 8565 8565 18.146 0 1 834220 40650 8646 27106 27122 39968 39968 -0.033489296670495605 SEIEAKVRY 9 Unmodified _SEIEAKVRY_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;TLN1|p.S405Afs*84|1|0.3|ENSG00000137076|chr9:35720503-35720503|T/-|frameshift_variant ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.774169921875 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 45.619 1 45.619 45.119 46.119 0 0 0 0 0.19512 1 8580 8580 12.241 9.358 1 40651 4065 27107 27123 39969 39969 0.03372824126381602 SEIEAKVRY 9 Unmodified _SEIEAKVRY_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;TLN1|p.S405Afs*84|1|0.3|ENSG00000137076|chr9:35720503-35720503|T/-|frameshift_variant ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7841186523438 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 45.69 1 45.69 45.19 46.19 0 0 0 0 0.19687 1 8592 8592 8.1555 5.2729 1 40652 4065 27107 27123 39970 39970 0.03372824126381602 SEIEAKVRY 9 Unmodified _SEIEAKVRY_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;TLN1|p.S405Afs*84|1|0.3|ENSG00000137076|chr9:35720503-35720503|T/-|frameshift_variant ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7821044921875 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 101.66 1 97.338 96.838 97.838 -4.3208 0 0 0 0.23508 1 19455 19455 11.64 0.84079 1 40653 4065 27107 27123 39971 39971 0.03372824126381602 SEIEAKVRY 9 Unmodified _SEIEAKVRY_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;TLN1|p.S405Afs*84|1|0.3|ENSG00000137076|chr9:35720503-35720503|T/-|frameshift_variant ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.778564453125 2 547.795663 1093.57677 -0.0069794 -3.8233E-06 0.99312 0.00054403 0.98614 0.0005402 547.7958524723363 48.572 0.48972 45.622 45.365 45.854 -2.9499 17 13 2 0 0 0 0.45972 1 8868 8868 8.1555 3.2585 1 1804200 40654 4065 27107 27123 39972 39972 0.03372824126381602 SEIEARIAA 9 Unmodified _SEIEARIAA_ 0 0 0 nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.244873046875 2 480.261456 958.50836 0.043914 2.109E-05 0.11763 5.6495E-05 0.16155 7.7585E-05 480.26150358938276 60.974 1.1085 58.041 57.644 58.753 -2.9333 82 31 5 0 0 0 0.16539 2 11734 11734;11742 41.956 0 1 18569000 40655 3920 27108 27124 39973;39974 39973 0.027445795465155243 SEIEARIAA 9 Unmodified _SEIEARIAA_ 0 0 0 nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2457275390625 2 480.261456 958.50836 0.13998 6.7228E-05 -0.024237 -1.164E-05 0.11575 5.5588E-05 480.2614212296994 61.289 0.938 58.05 57.581 58.519 -3.2395 76 26 4 0 0 0 0.21532 1 11477 11477 36.506 0 1 17779000 40656 3920 27108 27124 39975 39975 0.027445795465155243 SEIEARIAA 9 Unmodified _SEIEARIAA_ 0 0 0 nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.261456 958.50836 -0.31912 -0.00015326 0.52023 0.00024985 0.20111 9.6587E-05 480.2616763535007 58.414 1.2509 58.414 57.718 58.969 0 0.28136 0.00034832 NaN 41.956 86 35 3 NaN NaN NaN NaN 0 NaN NaN 0 13841000 40657 3920 27108 27124 0.027445795465155243 SEIEARIAA 9 Unmodified _SEIEARIAA_ 0 0 0 nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.261456 958.50836 0.11931 5.7299E-05 0.023546 1.1308E-05 0.14286 6.8608E-05 480.26141661438044 61.395 1.1232 58.026 57.584 58.707 -3.3694 -0.10664 -0.00012876 NaN 41.956 79 31 4 NaN NaN NaN NaN 0 NaN NaN 0 16413000 40658 3920 27108 27124 0.027445795465155243 SEIESRLP 8 Unmodified _SEIESRLP_ 0 0 0 nc|ENSG00000080298|P48380-2|RFX3;RFX3|p.L614Qfs*4|1|0.12|ENSG00000080298|chr9:3248156-3248160|CGTAA/-|frameshift_variant;ENSG00000080298|ENST00000617270|RFX3 nc|ENSG00000080298|P48380-2|RFX3 nc|ENSG00000080298|P48380-2|RFX3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2464904785156 2 465.748182 929.481811 0.27414 0.00012768 -0.019861 -9.2501E-06 0.25428 0.00011843 465.74793309690875 68.008 0.87348 64.471 63.954 64.828 -3.5362 44 24 3 0 0 0 0.61952 1 12780 12780 32.786 14.639 1 2361600 40659 12240 27109 27125 39976 39976 0.014248906551870277 SEIESRLP 8 Unmodified _SEIESRLP_ 0 0 0 nc|ENSG00000080298|P48380-2|RFX3;RFX3|p.L614Qfs*4|1|0.12|ENSG00000080298|chr9:3248156-3248160|CGTAA/-|frameshift_variant;ENSG00000080298|ENST00000617270|RFX3 nc|ENSG00000080298|P48380-2|RFX3 nc|ENSG00000080298|P48380-2|RFX3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2550048828125 2 465.748182 929.481811 0.32642 0.00015203 -0.36996 -0.00017231 -0.043542 -2.0279E-05 465.74797760250135 67.886 0.90282 64.559 63.935 64.838 -3.3268 40 25 2 0 0 0 0.44257 1 12744 12744 41.84 3.8656 1 2241400 40660 12240 27109 27125 39977 39977 0.014248906551870277 SEIESRLP 8 Unmodified _SEIESRLP_ 0 0 0 nc|ENSG00000080298|P48380-2|RFX3;RFX3|p.L614Qfs*4|1|0.12|ENSG00000080298|chr9:3248156-3248160|CGTAA/-|frameshift_variant;ENSG00000080298|ENST00000617270|RFX3 nc|ENSG00000080298|P48380-2|RFX3 nc|ENSG00000080298|P48380-2|RFX3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.748182 929.481811 -0.20157 -9.388E-05 0.25918 0.00012071 0.057609 2.6831E-05 465.7481240027653 64.463 0.72345 64.463 64.132 64.855 0 -0.037192 0.00023642 NaN 41.84 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1793200 40661 12240 27109 27125 0.014248906551870277 SEIFHSQSF 9 Unmodified _SEIFHSQSF_ 0 0 0 ENST00000517342.1_1_8:57389388-57389772:-|nuORF;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10 ENST00000517342.1_1_8:57389388-57389772:-|nuORF ENST00000517342.1_1_8:57389388-57389772:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2650146484375 2 541.251089 1080.48762 0.18127 9.8111E-05 0.12856 6.9585E-05 0.30983 0.0001677 541.2512515371095 92.202 0.42252 88.277 88.023 88.446 -3.9251 13 11 2 0 0 0 0.012534 2 18040 18020;18040 99.755 48.125 1 2086700 40662 7064 27110 27126 39978;39979 39979 -0.04940010833138331 SEIFHSQSF 9 Unmodified _SEIFHSQSF_ 0 0 0 ENST00000517342.1_1_8:57389388-57389772:-|nuORF;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10 ENST00000517342.1_1_8:57389388-57389772:-|nuORF ENST00000517342.1_1_8:57389388-57389772:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2625122070312 2 541.251089 1080.48762 0.19105 0.0001034 0.10596 5.7352E-05 0.29701 0.00016076 541.2511111242591 92.055 0.37819 88.247 87.999 88.377 -3.8083 14 10 2 0 0 0 0.012534 1 17605 17605 99.755 39.681 1 1304700 40663 7064 27110 27126 39980 39980 -0.04940010833138331 SEIFVKQTI 9 Unmodified _SEIFVKQTI_ 0 0 0 REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.28662109375 2 532.802957 1063.59136 0.3544 0.00018882 -0.92317 -0.00049187 -0.56877 -0.00030304 533.3053361043188 122.59 0.10258 118.06 118.01 118.11 -4.5305 4 2 2 0 0 0 0.68435 1 23593 23593 7.2892 0 1 410580 + 40664 24924 27111 27127 39981 39981 0.062108962745242025 SEIKDFSYVYK 11 Unmodified _SEIKDFSYVYK_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24151611328125 3 460.234487 1377.68163 NaN NaN NaN NaN NaN NaN NaN 109.63 1 105.25 104.75 105.75 -4.3776 0 0 0 0.20437 1 21604 21604 0.172 0 1 40665 2479 27112 27128 39982 39982 0.00789900812264932 SEIKDFSYVYK 11 Unmodified _SEIKDFSYVYK_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2313232421875 3 460.234487 1377.68163 NaN NaN NaN NaN NaN NaN NaN 109.65 1 105.27 104.77 105.77 -4.3776 0 0 0 0.21011 1 21607 21607 0.172 0 1 40666 2479 27112 27128 39983 39983 0.00789900812264932 SEIKDFSYVYK 11 Unmodified _SEIKDFSYVYK_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23248291015625 3 460.234487 1377.68163 NaN NaN NaN NaN NaN NaN NaN 109.89 1 105.51 105.01 106.01 -4.3776 0 0 0 0.21011 1 21654 21654 0.172 0.14059 1 40667 2479 27112 27128 39984 39984 0.00789900812264932 SEIKHEAF 8 Unmodified _SEIKHEAF_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24432373046875 2 480.742899 959.471246 0.027217 1.3085E-05 -0.11292 -5.4285E-05 -0.085701 -4.12E-05 480.74274528997245 28.761 0.73791 28.761 28.421 29.159 0 52 20 4 0 0 0 0.03601 3 5143 5091;5143;5151 126.57 66.176 1 29264000 40668 5117 27113 27129 39985;39986;39987 39986 -0.010110919992484924 SEIKHEAF 8 Unmodified _SEIKHEAF_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2442626953125 2 480.742899 959.471246 0.44042 0.00021173 -0.53463 -0.00025702 -0.094217 -4.5294E-05 480.7425581773427 30.817 0.70462 28.7 28.399 29.104 -2.1167 58 19 4 0 0 0 0.03601 3 5591 5544;5591;5618 126.57 66.176 1 38273000 40669 5117 27113 27129 39988;39989;39990 39989 -0.010110919992484924 SEIKHEAF 8 Unmodified _SEIKHEAF_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2442626953125 2 480.742899 959.471246 0.34094 0.00016391 -0.43089 -0.00020715 -0.08995 -4.3243E-05 480.74263062627165 30.656 1.019 28.763 28.381 29.4 -1.8928 64 28 4 0 0 0 0.03601 3 5278 5215;5228;5278 126.57 66.176 1 31589000 40670 5117 27113 27129 39991;39992;39993 39993 -0.010110919992484924 SEIKHEAF 8 Unmodified _SEIKHEAF_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.244384765625 2 480.742899 959.471246 0.4698 0.00022585 -0.61438 -0.00029536 -0.14458 -6.9505E-05 480.74251783066927 30.801 0.94395 28.727 28.326 29.27 -2.0743 73 26 4 0 0 0 0.03601 4 5308 5262;5308;5325;5352 126.57 66.176 1 28210000 40671 5117 27113 27129 39994;39995;39996;39997 39995 -0.010110919992484924 SEIKIRRSY 9 Unmodified _SEIKIRRSY_ 0 0 0 REV__PNISR|p.R697Kfs*7|1|0.33|ENSG00000132424|chr6:99400868-99400869|-/T|frameshift_variant REV__PNISR|p.R697Kfs*7|1|0.33|ENSG00000132424|chr6:99400868-99400869|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.318359375 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 134.56 1 129.69 129.19 130.19 -4.8726 0 0 0 0.19451 1 25848 25848 0.40827 0 1 + 40672 16116 27114 27130 39998 39998 0.0765590814596635 SEIKIRRSY 9 Unmodified _SEIKIRRSY_ 0 0 0 REV__PNISR|p.R697Kfs*7|1|0.33|ENSG00000132424|chr6:99400868-99400869|-/T|frameshift_variant REV__PNISR|p.R697Kfs*7|1|0.33|ENSG00000132424|chr6:99400868-99400869|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3299560546875 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 134.65 1 129.78 129.28 130.28 -4.8726 0 0 0 0.19451 1 25865 25865 0.40827 0 1 + 40673 16116 27114 27130 39999 39999 0.0765590814596635 SEIKIRRSY 9 Unmodified _SEIKIRRSY_ 0 0 0 REV__PNISR|p.R697Kfs*7|1|0.33|ENSG00000132424|chr6:99400868-99400869|-/T|frameshift_variant REV__PNISR|p.R697Kfs*7|1|0.33|ENSG00000132424|chr6:99400868-99400869|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3319702148438 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 134.58 1 129.76 129.26 130.26 -4.8175 0 0 0 0.23508 1 25907 25907 12.532 0 1 + 40674 16116 27114 27130 40000 40000 0.0765590814596635 SEILLKEF 8 Unmodified _SEILLKEF_ 0 0 0 OGFOD1|p.L299I|1|0.16|ENSG00000087263|chr16:56468013-56468013|C/A|missense_variant;nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1 OGFOD1|p.L299I|1|0.16|ENSG00000087263|chr16:56468013-56468013|C/A|missense_variant OGFOD1|p.L299I|1|0.16|ENSG00000087263|chr16:56468013-56468013|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2734069824219 2 489.778951 977.543348 0.18834 9.2247E-05 -0.28857 -0.00014133 -0.10022 -4.9087E-05 489.7788412782874 132.87 0.56219 132.87 132.51 133.07 0 22 15 2 0 0 0 0.082857 3 26248 26245;26248;26298 66.457 20.926 1 1767300 40675 1711 27115 27131 40001;40002;40003 40002 0.05367822354469354 SEILLKEF 8 Unmodified _SEILLKEF_ 0 0 0 OGFOD1|p.L299I|1|0.16|ENSG00000087263|chr16:56468013-56468013|C/A|missense_variant;nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1 OGFOD1|p.L299I|1|0.16|ENSG00000087263|chr16:56468013-56468013|C/A|missense_variant OGFOD1|p.L299I|1|0.16|ENSG00000087263|chr16:56468013-56468013|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2590637207031 2 489.778951 977.543348 0.13412 6.5687E-05 -0.10624 -5.2036E-05 0.027873 1.3652E-05 489.77883991701805 137.11 0.60062 132.47 132.09 132.69 -4.6413 26 16 2 0 0 0 0.28655 1 27029 27029 49.554 7.7147 1 2087500 40676 1711 27115 27131 40004 40004 0.05367822354469354 SEILLKEF 8 Unmodified _SEILLKEF_ 0 0 0 OGFOD1|p.L299I|1|0.16|ENSG00000087263|chr16:56468013-56468013|C/A|missense_variant;nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1 OGFOD1|p.L299I|1|0.16|ENSG00000087263|chr16:56468013-56468013|C/A|missense_variant OGFOD1|p.L299I|1|0.16|ENSG00000087263|chr16:56468013-56468013|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2632141113281 2 489.778951 977.543348 0.17104 8.377E-05 0.26884 0.00013167 0.43988 0.00021544 489.7790942079533 137.37 0.6339 132.45 132.12 132.76 -4.9215 25 17 2 0 0 0 8448 1 26428 26428 51.63 7.8574 1 1626400 40677 1711 27115 27131 40005 40005 0.05367822354469354 SEILLKEF 8 Unmodified _SEILLKEF_ 0 0 0 OGFOD1|p.L299I|1|0.16|ENSG00000087263|chr16:56468013-56468013|C/A|missense_variant;nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1 OGFOD1|p.L299I|1|0.16|ENSG00000087263|chr16:56468013-56468013|C/A|missense_variant OGFOD1|p.L299I|1|0.16|ENSG00000087263|chr16:56468013-56468013|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2623291015625 2 489.778951 977.543348 -0.0090005 -4.4083E-06 -0.27012 -0.0001323 -0.27912 -0.00013671 489.778844876842 137.28 0.5639 132.44 132.24 132.81 -4.84 23 15 2 0 0 0 8448 2 26444 26444;26456 43.772 25.399 1 2030000 40678 1711 27115 27131 40006;40007 40006 0.05367822354469354 SEILNKLY 8 Unmodified _SEILNKLY_ 0 0 0 nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5;DLG5|p.F1661Ifs*9|1|0.12|ENSG00000151208|chr10:77805849-77805850|-/C|frameshift_variant;DLG5|p.P861Qfs*32|1|0.31|ENSG00000151208|chr10:77821902-77821902|G/-|frameshift_variant;DLG5|p.P1167Rfs*16|1|0.62|ENSG00000151208|chr10:77819921-77819921|G/-|frameshift_variant nc|ENSG00000151208|Q8TDM6-2|DLG5 nc|ENSG00000151208|Q8TDM6-2|DLG5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2760314941406 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 38.651 1 38.651 38.151 39.151 0 0 0 0 0.21486 1 7169 7169 10.183 0 1 40679 4852 27116 27132 40008 40008 0.048469382116991255 SEILTQEVY 9 Unmodified _SEILTQEVY_ 0 0 0 ENST00000430546.1_1_2:168671597-168726282:-|nuORF ENST00000430546.1_1_2:168671597-168726282:-|nuORF ENST00000430546.1_1_2:168671597-168726282:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.274169921875 2 541.274229 1080.53391 0.20598 0.00011149 -0.31848 -0.00017239 -0.1125 -6.0895E-05 541.2740566427183 45.387 0.60071 42.574 42.325 42.926 -2.813 36 16 3 0 0 0 0.68435 1 8615 8615 7.2892 2.5332 1 6730100 40680 9778 27117 27133 40009 40009 -0.0031399072170188447 SEIPLELQ 8 Unmodified _SEIPLELQ_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant;SYNE2|p.S1830Kfs*9|1|0.34|ENSG00000054654|chr14:64021985-64021986|-/A|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2552185058594 2 464.752933 927.491313 -0.11675 -5.4261E-05 1.6821 0.00078174 1.5653 0.00072748 464.7537044711237 44.253 0.34874 41.463 41.22 41.569 -2.79 16 9 2 0 0 0 0.68827 1 8290 8290 20.454 0 1 675950 40681 1266 27118 27134 40010 40010 0.024666589407161155 SEIPLVLVEP 10 Unmodified _SEIPLVLVEP_ 0 0 0 AGAP1|p.G177Efs*6|1|0.27|ENSG00000157985|chr2:235744829-235744829|G/-|frameshift_variant AGAP1|p.G177Efs*6|1|0.27|ENSG00000157985|chr2:235744829-235744829|G/-|frameshift_variant AGAP1|p.G177Efs*6|1|0.27|ENSG00000157985|chr2:235744829-235744829|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7770385742188 2 548.31844 1094.62233 0.17544 9.6198E-05 3.319 0.0018198 3.4944 0.001916 548.3204583087656 82.966 0.11028 79.358 79.266 79.377 -3.6079 4 2 2 0 0 0 1.128 1 16202 16202 0.20733 0.19406 1 548650 40682 92 27119 27135 40011 40011 0.07880049588766269 SEIQNEVDF 9 Unmodified _SEIQNEVDF_ 0 0 0 ENST00000328205.9_2_1:226483592-226485460:-|nuORF ENST00000328205.9_2_1:226483592-226485460:-|nuORF ENST00000328205.9_2_1:226483592-226485460:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2598266601562 2 540.745836 1079.47712 0.22455 0.00012143 0.41254 0.00022308 0.63709 0.0003445 540.7458295354676 100.83 0.72235 96.672 96.187 96.91 -4.1594 36 20 3 0 0 0 0.54354 1 19844 19844 16.942 1.0951 1 2293900 40683 8751 27120 27136 40012 40012 -0.05944038278244079 SEIQNEVDF 9 Unmodified _SEIQNEVDF_ 0 0 0 ENST00000328205.9_2_1:226483592-226485460:-|nuORF ENST00000328205.9_2_1:226483592-226485460:-|nuORF ENST00000328205.9_2_1:226483592-226485460:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.263916015625 2 540.745836 1079.47712 0.37902 0.00020495 0.39529 0.00021375 0.7743 0.0004187 540.7457216567578 100.93 0.51241 96.63 96.296 96.808 -4.297 22 14 3 0 0 0 0.54354 1 19287 19287 16.942 3.4344 1 2348700 40684 8751 27120 27136 40013 40013 -0.05944038278244079 SEIQTSDRHYH 11 Unmodified _SEIQTSDRHYH_ 0 0 0 REV__CLK4|p.D92_I93insSTQ|1|0.03|ENSG00000113240|chr5:178618663-178618664|-/TTGAGTGGA|inframe_insertion REV__CLK4|p.D92_I93insSTQ|1|0.03|ENSG00000113240|chr5:178618663-178618664|-/TTGAGTGGA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2251281738281 3 458.212857 1371.61674 NaN NaN NaN NaN NaN NaN NaN 26.872 1 26.872 26.372 27.372 0 0 0 0 0.22632 1 4721 4721 0.172 0 1 + 40685 13448 27121 27137 40014 40014 -0.054202809410071495 SEIQVLEH 8 Unmodified _SEIQVLEH_ 0 0 0 ENST00000461981.5_1_2:201722417-201724542:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1;ENST00000519132.5_1_5:178032378-178044013:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENSG00000113240|ENST00000316308|CLK4 ENST00000461981.5_1_2:201722417-201724542:-|nuORF ENST00000461981.5_1_2:201722417-201724542:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7425842285156 2 477.748182 953.481811 0.34167 0.00016323 -0.026848 -1.2826E-05 0.31482 0.0001504 477.7480671314567 68.478 0.78622 65.087 64.705 65.491 -3.3903 45 22 3 0 0 0 0.14223 1 12942 12942 54.774 18.729 1 3482300 40686 1099 27122 27138 40015 40015 0.0032089065518903226 SEIQVLEH 8 Unmodified _SEIQVLEH_ 0 0 0 ENST00000461981.5_1_2:201722417-201724542:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1;ENST00000519132.5_1_5:178032378-178044013:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENSG00000113240|ENST00000316308|CLK4 ENST00000461981.5_1_2:201722417-201724542:-|nuORF ENST00000461981.5_1_2:201722417-201724542:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.748182 953.481811 -0.41471 -0.00019813 0.75319 0.00035983 0.33848 0.00016171 477.74841453973994 65.225 0.83569 65.225 64.786 65.622 0 0.099856 0.00047259 NaN 54.774 34 23 2 NaN NaN NaN NaN 0 NaN NaN 0 3677600 40687 1099 27122 27138 0.0032089065518903226 SEIQVLEH 8 Unmodified _SEIQVLEH_ 0 0 0 ENST00000461981.5_1_2:201722417-201724542:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1;ENST00000519132.5_1_5:178032378-178044013:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENSG00000113240|ENST00000316308|CLK4 ENST00000461981.5_1_2:201722417-201724542:-|nuORF ENST00000461981.5_1_2:201722417-201724542:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.748182 953.481811 -0.06013 -2.8727E-05 0.29573 0.00014129 0.2356 0.00011256 477.7483054440478 68.286 0.72379 65.107 64.794 65.518 -3.1796 -0.018534 3.5491E-05 NaN 54.774 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 4865900 40688 1099 27122 27138 0.0032089065518903226 SEIQVLEH 8 Unmodified _SEIQVLEH_ 0 0 0 ENST00000461981.5_1_2:201722417-201724542:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1;ENST00000519132.5_1_5:178032378-178044013:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENSG00000113240|ENST00000316308|CLK4 ENST00000461981.5_1_2:201722417-201724542:-|nuORF ENST00000461981.5_1_2:201722417-201724542:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.748182 953.481811 0.3208 0.00015326 0.13102 6.2594E-05 0.45182 0.00021586 477.7481408735897 68.618 0.60278 65.082 64.864 65.466 -3.5362 -0.043514 -0.00012189 NaN 54.774 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3527300 40689 1099 27122 27138 0.0032089065518903226 SEITDLSSA 9 Unmodified _SEITDLSSA_ 0 0 0 ENSG00000115993|ENST00000332624|TRAK2;TRAK2|p.I759Kfs*62|1|0.06|ENSG00000115993|chr2:201381012-201381013|-/ATTTT|frameshift_variant ENSG00000115993|ENST00000332624|TRAK2 ENSG00000115993|ENST00000332624|TRAK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5446472167969 2 461.72183 921.429106 0.19455 8.9828E-05 2.4944 0.0011517 2.689 0.0012416 461.72181298767936 73.153 0.52857 69.498 69.318 69.846 -3.6546 21 14 2 0 0 0 0.63326 1 13803 13803 15.847 7.2539 1 1067900 40690 2898 27123 27139 40016 40016 -0.034751121982708355 SEITDLSSA 9 Unmodified _SEITDLSSA_ 0 0 0 ENSG00000115993|ENST00000332624|TRAK2;TRAK2|p.I759Kfs*62|1|0.06|ENSG00000115993|chr2:201381012-201381013|-/ATTTT|frameshift_variant ENSG00000115993|ENST00000332624|TRAK2 ENSG00000115993|ENST00000332624|TRAK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.72183 921.429106 -0.19443 -8.9774E-05 0.78164 0.0003609 0.58721 0.00027113 461.72182824001527 72.825 0.60891 69.514 69.169 69.778 -3.3107 -0.044253 -0.00029667 NaN 15.847 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2087800 40691 2898 27123 27139 -0.034751121982708355 SEITDTVAA 9 Unmodified _SEITDTVAA_ 0 0 0 nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7520446777344 2 453.724372 905.434192 0.084431 3.8308E-05 0.14698 6.6688E-05 0.23141 0.000105 453.7243818542077 56.158 0.97811 56.158 55.836 56.814 0 71 27 4 0 0 0 1.0769E-05 1 10738 10738 74.216 37.405 1 7610100 40692 1306 27124 27140 40017 40017 -0.022308083356733732 SEITDTVAA 9 Unmodified _SEITDTVAA_ 0 0 0 nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75201416015625 2 453.724372 905.434192 0.033942 1.54E-05 0.11214 5.0881E-05 0.14608 6.6282E-05 453.7243809170784 59.417 0.91438 56.103 55.707 56.622 -3.3139 73 25 4 0 0 0 1.4506E-23 1 11025 11025 81.552 39.32 1 11148000 40693 1306 27124 27140 40018 40018 -0.022308083356733732 SEITDTVAA 9 Unmodified _SEITDTVAA_ 0 0 0 nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.759765625 2 453.724372 905.434192 0.080756 3.6641E-05 0.16568 7.5171E-05 0.24643 0.00011181 453.7243780251143 59.417 1.1202 56.193 55.664 56.784 -3.2237 94 31 4 0 0 0 0.064469 1 11042 11042 77.984 21.443 1 11382000 40694 1306 27124 27140 40019 40019 -0.022308083356733732 SEKDIQTV 8 Unmodified _SEKDIQTV_ 0 0 0 tr|U7ST05|U7ST05_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01663PE=4SV=1 tr|U7ST05|U7ST05_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01663PE=4SV=1 tr|U7ST05|U7ST05_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01663PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.239013671875 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 74.23 1 70.866 70.366 71.366 -3.3643 0 0 0 0.22674 1 14481 14481 1.4551 0 1 40695 26119 27125 27141 40020 40020 0.0033318441827532297 SEKDQINLP 9 Unmodified _SEKDQINLP_ 0 0 0 REV__ENST00000477418.2_1_1:27206170-27212721:-|nuORF REV__ENST00000477418.2_1_1:27206170-27212721:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2821044921875 2 522.272021 1042.52949 -0.10076 -5.2624E-05 -1.2844 -0.00067083 -1.3852 -0.00072346 522.2717321117082 58.965 0.42115 58.965 58.792 59.213 0 16 11 2 0 0 0 0.54354 1 11321 11321 16.942 0 1 747200 + 40696 16687 27126 27142 40021 40021 0.009925448553758542 SEKDQINLP 9 Unmodified _SEKDQINLP_ 0 0 0 REV__ENST00000477418.2_1_1:27206170-27212721:-|nuORF REV__ENST00000477418.2_1_1:27206170-27212721:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.271728515625 2 522.272021 1042.52949 -0.17366 -9.0698E-05 -2.3824 -0.0012443 -2.556 -0.001335 522.771182812167 61.713 0.56444 58.751 58.514 59.078 -2.9614 25 15 2 0 0 0 0.46541 1 11924 11924 21.747 1.293 1 1486800 + 40697 16687 27126 27142 40022 40022 0.009925448553758542 SEKDQINLP 9 Unmodified _SEKDQINLP_ 0 0 0 REV__ENST00000477418.2_1_1:27206170-27212721:-|nuORF REV__ENST00000477418.2_1_1:27206170-27212721:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2715454101562 2 522.272021 1042.52949 0.2577 0.00013459 -2.8572 -0.0014922 -2.5995 -0.0013576 522.2718289362009 62.031 0.65776 58.791 58.448 59.105 -3.2395 30 18 2 0 0 0 0.46541 1 11631 11631 21.747 1.293 1 1251900 + 40698 16687 27126 27142 40023 40023 0.009925448553758542 SEKEATPVV 9 Unmodified _SEKEATPVV_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2362365722656 2 480.25584 958.497126 -0.028374 -1.3627E-05 -0.019293 -9.2655E-06 -0.047667 -2.2892E-05 480.25581326828075 33.92 0.83855 33.92 33.474 34.312 0 81 23 4 0 0 0 0.058674 1 6209 6209 74.216 71.112 1 112050000 40699 2991 27127 27143 40024 40024 0.01621757452392103 SEKEATPVV 9 Unmodified _SEKEATPVV_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2371826171875 2 480.25584 958.497126 -0.37698 -0.00018105 0.26375 0.00012667 -0.11323 -5.4381E-05 480.2559420926776 36.078 1.7363 33.684 32.388 34.124 -2.3938 108 48 4 0 0 0 0.058674 2 6653 6653;6702 74.216 70.623 1 138440000 40700 2991 27127 27143 40025;40026 40025 0.01621757452392103 SEKEATPVV 9 Unmodified _SEKEATPVV_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23394775390625 2 480.25584 958.497126 0.1544 7.4154E-05 -0.31369 -0.00015065 -0.15928 -7.6495E-05 480.2556856615837 36.019 1.877 33.767 32.392 34.269 -2.2527 135 53 5 0 0 0 0.11219 2 6407 6340;6407 51.63 17.228 1 113110000 40701 2991 27127 27143 40027;40028 40028 0.01621757452392103 SEKEATPVV 9 Unmodified _SEKEATPVV_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.25584 958.497126 0.24858 0.00011938 -0.37003 -0.00017771 -0.12145 -5.8328E-05 480.25566523642664 36.031 0.94894 33.755 33.281 34.23 -2.2766 -0.02674 -0.00024262 NaN 74.216 103 26 5 NaN NaN NaN NaN 0 NaN NaN 0 98017000 40702 2991 27127 27143 0.01621757452392103 SEKEFHVLP 9 Unmodified _SEKEFHVLP_ 0 0 0 nc|ENSG00000157181|Q5SWX8-4|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4;ENST00000478571.1_1_1:186368103-186380944:+|nuORF nc|ENSG00000157181|Q5SWX8-4|ODR4 nc|ENSG00000157181|Q5SWX8-4|ODR4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7766723632812 2 543.284931 1084.55531 0.62632 0.00034027 -0.23326 -0.00012672 0.39306 0.00021355 543.2848347815908 81.683 0.52263 81.683 81.475 81.998 0 23 14 2 0 0 0 0.46882 2 15932 15891;15932 21.537 5.6898 1 2269000 40703 12396 27128 27144 40029;40030 40030 0.016414390976706272 SEKEGLTPP 9 Unmodified _SEKEGLTPP_ 0 0 0 ENSG00000272391|ENST00000615331|POM121C;nc|ENSG00000272391|A8CG34|POM121C ENSG00000272391|ENST00000615331|POM121C ENSG00000272391|ENST00000615331|POM121C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7328796386719 2 479.248015 956.481476 0.018392 8.8146E-06 -0.072044 -3.4527E-05 -0.053651 -2.5712E-05 479.2479238803562 41.806 1.4816 39.2 38.306 39.788 -2.606 76 41 2 0 0 0 0.13841 1 7493 7493 55.503 17.529 1 11347000 40704 8005 27129 27145 40031 40031 0.001494709353323742 SEKEKLEP 8 Unmodified _SEKEKLEP_ 0 0 0 REV__ENSG00000135698|ENST00000258169|MPHOSPH6 REV__ENSG00000135698|ENST00000258169|MPHOSPH6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77520751953125 2 480.25584 958.497126 0.24858 0.00011938 -0.37003 -0.00017771 -0.12145 -5.8328E-05 480.25566523642664 36.031 0.94894 33.755 33.281 34.23 -2.2766 103 26 5 0 0 0 8448 1 6344 6344 19.391 4.4335 1 98017000 + 40705 16283 27130 27146 40032 40032 0.016217574523807343 SEKEQVEA 8 Unmodified _SEKEQVEA_ 0 0 0 REV__ENSG00000116198|ENST00000378230|CEP104 REV__ENSG00000116198|ENST00000378230|CEP104 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2485656738281 2 460.221997 918.429441 -0.10903 -5.018E-05 0.24718 0.00011376 0.13815 6.3578E-05 460.22207352281504 45.004 1.7159 42.257 41.568 43.284 -2.7475 119 48 4 0 0 0 0.15314 1 8107 8107 64.236 0 1 51914000 + 40706 13372 27131 27147 40033 40033 -0.03303692478425546 SEKFHIDPL 9 Unmodified _SEKFHIDPL_ 0 0 0 ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;nc|ENSG00000196159|Q6V0I7-3|FAT4;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant ENSG00000196159|ENST00000394329|FAT4 ENSG00000196159|ENST00000394329|FAT4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.786376953125 2 543.284931 1084.55531 0.62632 0.00034027 -0.23326 -0.00012672 0.39306 0.00021355 543.2848347815908 81.683 0.52263 81.683 81.475 81.998 0 23 14 2 0 0 0 0.62314 1 15939 15939 11.495 0 1 2269000 40707 7238 27132 27148 40034 40034 0.016414390976706272 SEKGHGPK 8 Unmodified _SEKGHGPK_ 0 0 0 REV__ENST00000304813.13_1_12:100550719-100551143:-|nuORF REV__ENST00000304813.13_1_12:100550719-100551143:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 420.2225036621094 2 420.222134 838.429715 NaN NaN NaN NaN NaN NaN NaN 103.31 1 103.31 102.81 103.81 0 0 0 0 0.23025 1 20300 20300 0.68139 0.054566 1 + 40708 20427 27133 27149 40035 40035 0.00403772032109373 SEKGLNESP 9 Unmodified _SEKGLNESP_ 0 0 0 REV__TOR1AIP2|p.P112S|1|0.12|ENSG00000169905|chr1:179851064-179851064|G/A|missense_variant REV__TOR1AIP2|p.P112S|1|0.12|ENSG00000169905|chr1:179851064-179851064|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2355041503906 2 480.735271 959.45599 -0.087807 -4.2212E-05 -0.092717 -4.4572E-05 -0.18052 -8.6784E-05 480.7353157620412 17.193 0.31523 17.193 17.03 17.345 0 18 8 3 0 0 0 0.18865 1 2708 2708 49.933 0 1 944380 + 40709 24832 27134 27150 40036 40036 -0.02536003587090363 SEKGLNESP 9 Unmodified _SEKGLNESP_ 0 0 0 REV__TOR1AIP2|p.P112S|1|0.12|ENSG00000169905|chr1:179851064-179851064|G/A|missense_variant REV__TOR1AIP2|p.P112S|1|0.12|ENSG00000169905|chr1:179851064-179851064|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2386169433594 2 480.735271 959.45599 -0.025615 -1.2314E-05 -0.434 -0.00020864 -0.45962 -0.00022096 480.7348122352423 18.402 0.37943 17.091 16.902 17.282 -1.3109 18 10 2 0 0 0 0.18865 1 2969 2969 49.933 0 1 765900 + 40710 24832 27134 27150 40037 40037 -0.02536003587090363 SEKGLNESP 9 Unmodified _SEKGLNESP_ 0 0 0 REV__TOR1AIP2|p.P112S|1|0.12|ENSG00000169905|chr1:179851064-179851064|G/A|missense_variant REV__TOR1AIP2|p.P112S|1|0.12|ENSG00000169905|chr1:179851064-179851064|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.735271 959.45599 -0.087807 -4.2212E-05 -0.092717 -4.4572E-05 -0.18052 -8.6784E-05 480.7353157620412 17.193 0.31523 17.193 17.03 17.345 0 0.077574 -0.0001634 NaN 49.933 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 944380 + 40711 24832 27134 27150 -0.02536003587090363 SEKKKQMY 8 Unmodified _SEKKKQMY_ 0 0 0 REV__nc|ENSG00000155959|P61758-2|VBP1 REV__nc|ENSG00000155959|P61758-2|VBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 521.1714477539062 2 521.273509 1040.53247 -0.12638 -6.588E-05 -1.0373 -0.00054074 -1.1637 -0.00060662 521.2730860371099 32.737 0.49152 30.506 30.294 30.785 -2.2305 14 13 2 0 0 0 1.0249 1 6021 6021 0 0 1 668750 + 40712 17234 27135 27151 40038 40038 0.013820967085621305 SEKKMETEV 9 Unmodified _SEKKMETEV_ 0 0 0 REV__nc|ENSG00000035928|P35251|RFC1 REV__nc|ENSG00000035928|P35251|RFC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2709350585938 2 540.765714 1079.51688 0.020978 1.1344E-05 2.4498 0.0013248 2.4708 0.0013361 540.7673435213092 51.503 0.42032 48.452 48.169 48.589 -3.0517 15 11 2 0 0 0 0.73268 1 9442 9442 18.146 8.7632 1 1229200 + 40713 14030 27136 27152 40039 40039 -0.01970234599161813 SEKPAPPPP 9 Unmodified _SEKPAPPPP_ 0 0 0 REV__ENSG00000188620|ENST00000357878|HMX3 REV__ENSG00000188620|ENST00000357878|HMX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24664306640625 2 460.247818 918.481082 -0.2636 -0.00012132 -2.0439 -0.0009407 -2.3075 -0.001062 460.246867418129 34.561 0.44914 32.244 32.083 32.533 -2.3175 17 12 2 0 0 0 0.60805 1 6392 6392 12.532 1.7076 1 837870 + 40714 19160 27137 27153 40040 40040 0.01858096006139931 SEKRGKWYRKM 11 Unmodified _SEKRGKWYRKM_ 0 0 0 ARHGEF9|p.I414Yfs*34|1|0.28|ENSG00000131089|chrX:63655554-63655554|T/-|frameshift_variant ARHGEF9|p.I414Yfs*34|1|0.28|ENSG00000131089|chrX:63655554-63655554|T/-|frameshift_variant ARHGEF9|p.I414Yfs*34|1|0.28|ENSG00000131089|chrX:63655554-63655554|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25994873046875 3 490.266239 1467.77689 NaN NaN NaN NaN NaN NaN NaN 61.706 1 58.467 57.967 58.967 -3.2395 0 0 0 0.22632 1 11556 11556 0.00056442 0 1 40715 216 27138 27154 40041 40041 0.06170975522331901 SEKRMMEIA 9 Unmodified _SEKRMMEIA_ 0 0 0 ENST00000442009.6_1_9:37489340-37503196:+|nuORF;ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E ENST00000442009.6_1_9:37489340-37503196:+|nuORF ENST00000442009.6_1_9:37489340-37503196:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7692260742188 2 547.770277 1093.526 NaN NaN NaN NaN NaN NaN NaN 47.269 1 44.4 43.9 44.9 -2.869 0 0 0 0.11838 1 8927 8927 34.932 7.3033 1 40716 4061 27139 27155 40042 40042 -0.017021645144723152 SEKRMMEIA 9 Unmodified _SEKRMMEIA_ 0 0 0 ENST00000442009.6_1_9:37489340-37503196:+|nuORF;ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E ENST00000442009.6_1_9:37489340-37503196:+|nuORF ENST00000442009.6_1_9:37489340-37503196:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7788696289062 2 547.770277 1093.526 NaN NaN NaN NaN NaN NaN NaN 47.348 1 44.479 43.979 44.979 -2.869 0 0 0 0.12107 1 8945 8945 36.81 24.569 1 40717 4061 27139 27155 40043 40043 -0.017021645144723152 SEKRMMEIA 9 Unmodified _SEKRMMEIA_ 0 0 0 ENST00000442009.6_1_9:37489340-37503196:+|nuORF;ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E ENST00000442009.6_1_9:37489340-37503196:+|nuORF ENST00000442009.6_1_9:37489340-37503196:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7697143554688 2 547.770277 1093.526 NaN NaN NaN NaN NaN NaN NaN 47.516 1 44.647 44.147 45.147 -2.869 0 0 0 0.098577 1 8977 8977 38.615 12.347 1 40718 4061 27139 27155 40044 40044 -0.017021645144723152 SEKRMMEIA 9 Unmodified _SEKRMMEIA_ 0 0 0 ENST00000442009.6_1_9:37489340-37503196:+|nuORF;ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E ENST00000442009.6_1_9:37489340-37503196:+|nuORF ENST00000442009.6_1_9:37489340-37503196:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7804565429688 2 547.770277 1093.526 0.029199 1.5994E-05 -2.3346 -0.0012788 -2.3054 -0.0012628 547.7700265928637 47.449 0.58352 44.507 44.205 44.788 -2.9421 45 16 4 0 0 0 0.35429 3 8631 8611;8631;8679 28.495 6.7479 1 3846400 40719 4061 27139 27155 40045;40046;40047 40046 -0.017021645144723152 SEKRMMEIA 9 Unmodified _SEKRMMEIA_ 0 0 0 ENST00000442009.6_1_9:37489340-37503196:+|nuORF;ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E ENST00000442009.6_1_9:37489340-37503196:+|nuORF ENST00000442009.6_1_9:37489340-37503196:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7880859375 2 547.770277 1093.526 -0.016049 -8.791E-06 -3.1132 -0.0017053 -3.1293 -0.0017141 547.7699324883339 47.386 0.48345 44.436 44.224 44.708 -2.9499 42 13 4 0 0 0 0.15128 3 8665 8635;8665;8687 43.982 9.5801 1 3405500 40720 4061 27139 27155 40048;40049;40050 40049 -0.017021645144723152 SEKSDEIIY 9 Unmodified _SEKSDEIIY_ 0 0 0 REV__ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant REV__ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7813720703125 2 542.263862 1082.51317 0.33865 0.00018364 -0.2362 -0.00012809 0.10245 5.5554E-05 542.2636390845257 67.931 0.94376 64.395 63.884 64.828 -3.5362 84 26 4 0 0 0 0.62102 1 12679 12679 11.64 0 1 38538000 + 40721 25562 27140 27156 40051 40051 -0.024785811013543935 SEKSEILAKRL 11 Unmodified _SEKSEILAKRL_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7;DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25384521484375 3 425.253993 1272.74015 NaN NaN NaN NaN NaN NaN NaN 81.442 1 77.602 77.102 78.102 -3.8392 0 0 0 0.2288 1 15462 15462 9.2438 0 1 40722 866 27141 27157 40052 40052 0.1146900217743223 SEKTLHSKY 9 Unmodified _SEKTLHSKY_ 0 0 0 ENSG00000114857|ENST00000232978|NKTR;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant ENSG00000114857|ENST00000232978|NKTR ENSG00000114857|ENST00000232978|NKTR MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7877197265625 2 546.787838 1091.56112 0.22293 0.0001219 -0.20183 -0.00011036 0.021098 1.1536E-05 546.7876920298434 55.232 0.95875 55.232 54.877 55.836 0 84 26 5 0 0 0 0.41081 1 10613 10613 0.87518 0 1 65079000 40723 2814 27142 27158 40053 40053 0.019005376093446102 SEKVPAKRPG 10 Unmodified _SEKVPAKRPG_ 0 0 0 REV__ZNF688|p.R240Afs*19|1|0.32|ENSG00000229809|chr16:30570029-30570030|-/C|frameshift_variant REV__ZNF688|p.R240Afs*19|1|0.32|ENSG00000229809|chr16:30570029-30570030|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0727844238281 3 356.876857 1067.60874 -0.20047 -7.1543E-05 0.35005 0.00012493 0.14958 5.3382E-05 356.87690121844923 33.028 0.51846 30.797 30.507 31.025 -2.2305 22 14 2 0 0 0 0.91149 1 6077 6077 1.7423 0.67081 1 866250 + 40724 19743 27143 27159 40054 40054 0.07764236600178265 SEKVPAKRPG 10 Unmodified _SEKVPAKRPG_ 0 0 0 REV__ZNF688|p.R240Afs*19|1|0.32|ENSG00000229809|chr16:30570029-30570030|-/C|frameshift_variant REV__ZNF688|p.R240Afs*19|1|0.32|ENSG00000229809|chr16:30570029-30570030|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 356.876857 1067.60874 -0.23718 -8.4643E-05 -0.18514 -6.6072E-05 -0.42232 -0.00015072 356.8767724564946 30.968 0.38254 30.968 30.725 31.108 0 0.17211 -0.00035831 NaN 1.7423 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 833560 + 40725 19743 27143 27159 0.07764236600178265 SEKVPAKRPG 10 Unmodified _SEKVPAKRPG_ 0 0 0 REV__ZNF688|p.R240Afs*19|1|0.32|ENSG00000229809|chr16:30570029-30570030|-/C|frameshift_variant REV__ZNF688|p.R240Afs*19|1|0.32|ENSG00000229809|chr16:30570029-30570030|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 356.876857 1067.60874 0.24661 8.801E-05 -0.031186 -1.113E-05 0.21543 7.688E-05 356.8767232166603 32.844 0.48326 30.697 30.522 31.006 -2.1468 -0.098687 -0.00019349 NaN 1.7423 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 913070 + 40726 19743 27143 27159 0.07764236600178265 SEKVSAHTP 9 Unmodified _SEKVSAHTP_ 0 0 0 ENST00000420686.5_1_2:85836070-85838959:-|nuORF;ENSG00000168887|ENST00000306336|C2orf68 ENST00000420686.5_1_2:85836070-85838959:-|nuORF ENST00000420686.5_1_2:85836070-85838959:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7436218261719 2 478.245806 954.47706 -0.061542 -2.9432E-05 -1.4591 -0.00069782 -1.5207 -0.00072725 478.2458375858826 23.418 0.55957 21.965 21.647 22.206 -1.4535 23 15 2 0 0 0 0.34411 1 3733 3733 29.082 11.969 1 459320 40727 5944 27144 27160 40055 40055 -0.001999934875584586 SEKVSAHTP 9 Unmodified _SEKVSAHTP_ 0 0 0 ENST00000420686.5_1_2:85836070-85838959:-|nuORF;ENSG00000168887|ENST00000306336|C2orf68 ENST00000420686.5_1_2:85836070-85838959:-|nuORF ENST00000420686.5_1_2:85836070-85838959:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7438659667969 2 478.245806 954.47706 -0.36782 -0.00017591 0.15934 7.6206E-05 -0.20847 -9.9701E-05 478.2459723485182 23.682 0.55759 21.893 21.662 22.22 -1.7886 18 15 2 0 0 0 0.34411 1 3811 3811 29.082 5.9332 1 490110 40728 5944 27144 27160 40056 40056 -0.001999934875584586 SEKVSAHTP 9 Unmodified _SEKVSAHTP_ 0 0 0 ENST00000420686.5_1_2:85836070-85838959:-|nuORF;ENSG00000168887|ENST00000306336|C2orf68 ENST00000420686.5_1_2:85836070-85838959:-|nuORF ENST00000420686.5_1_2:85836070-85838959:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.245806 954.47706 -0.077154 -3.6899E-05 -0.33482 -0.00016013 -0.41197 -0.00019702 478.2459258946072 21.958 0.5894 21.958 21.669 22.258 0 0.019298 -0.00016619 NaN 29.082 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 643520 40729 5944 27144 27160 -0.001999934875584586 SEKWKLTA 8 Unmodified _SEKWKLTA_ 0 0 0 REV__ENSG00000119927|ENST00000348367|GPAM REV__ENSG00000119927|ENST00000348367|GPAM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7699890136719 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 33.848 1 31.531 31.031 32.031 -2.3175 0 0 0 0.21486 1 6200 6200 9.3474 1.4373 1 + 40730 15602 27145 27161 40057 40057 0.040980714145121055 SEKWKQNAP 9 Unmodified _SEKWKQNAP_ 0 0 0 nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF nc|ENSG00000149600|Q86VX2-2|COMMD7 nc|ENSG00000149600|Q86VX2-2|COMMD7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7885131835938 2 544.28018 1086.54581 0.86838 0.00047264 -0.45104 -0.00024549 0.41734 0.00022715 544.279848636209 22.528 0.48076 21.054 20.796 21.277 -1.4742 19 13 2 0 0 0 0.74858 1 3856 3856 17.113 0.96379 1 922290 40731 4803 27146 27162 40058 40058 0.005996708121301708 SEKWKQNAP 9 Unmodified _SEKWKQNAP_ 0 0 0 nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF nc|ENSG00000149600|Q86VX2-2|COMMD7 nc|ENSG00000149600|Q86VX2-2|COMMD7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7808837890625 2 544.28018 1086.54581 -0.098469 -5.3595E-05 0.70714 0.00038488 0.60867 0.00033129 544.2805247373245 22.38 0.46109 20.926 20.764 21.226 -1.4535 20 12 2 0 0 0 0.73268 1 3590 3590 18.146 3.3081 1 1121300 40732 4803 27146 27162 40059 40059 0.005996708121301708 SEKYKFIAT 9 Unmodified _SEKYKFIAT_ 0 0 0 REV__tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1 REV__tr|U7ST99|U7ST99_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00978PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7955932617188 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 21.392 1 19.671 19.171 20.171 -1.7211 0 0 0 0.23508 1 3343 3343 7.9102 1.187 1 + 40733 25090 27147 27163 40060 40060 0.03634609757477847 SELAGPRW 8 Unmodified _SELAGPRW_ 0 0 0 ENST00000521478.1_1_7:27186941-27190216:-|nuORF ENST00000521478.1_1_7:27186941-27190216:-|nuORF ENST00000521478.1_1_7:27186941-27190216:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2384338378906 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 70.395 1 66.815 66.315 67.315 -3.5798 0 0 0 0.21452 1 13268 13268 13.508 2.684 1 40734 10851 27148 27164 40061 40061 0.0003634506618936939 SELALDEP 8 Unmodified _SELALDEP_ 0 0 0 REV__nc|ENSG00000163249|Q8N7R7-2|CCNYL1 REV__nc|ENSG00000163249|Q8N7R7-2|CCNYL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2147216796875 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 116.43 1 111.85 111.35 112.35 -4.5815 0 0 0 0.19954 1 22342 22342 24.674 6.5389 1 + 40735 17555 27149 27165 40062 40062 -0.028581933643863522 SELCGLHML 9 Unmodified _SELCGLHML_ 0 0 0 REV__TFAP2D|p.Q26H|1|0.15|ENSG00000008197|chr6:50715154-50715154|G/T|missense_variant REV__TFAP2D|p.Q26H|1|0.15|ENSG00000008197|chr6:50715154-50715154|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 501.24365234375 2 501.740988 1001.46742 0.21266 0.0001067 1.1432 0.00057361 1.3559 0.00068031 501.74139881430546 53.161 0.56335 53.161 52.931 53.495 0 30 15 2 0 0 0 0.53499 1 10182 10182 1.2148 0 1 10135000 + 40736 24789 27150 27166 40063 40063 -0.03325221088971375 SELDALASL 9 Unmodified _SELDALASL_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;ENST00000476908.1_1_1:114948024-114949565:-|nuORF nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24334716796875 2 459.742565 917.470577 0.22313 0.00010258 0.25714 0.00011822 0.48027 0.0002208 459.74260140519897 118.14 0.70762 118.14 117.76 118.47 0 32 19 2 0 0 0 0.095051 1 23290 23290 57.471 0 1 2005700 40737 7354 27151 27167 40064 40064 0.008540685610341825 SELDALASL 9 Unmodified _SELDALASL_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;ENST00000476908.1_1_1:114948024-114949565:-|nuORF nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2340087890625 2 459.742565 917.470577 0.12095 5.5607E-05 0.53544 0.00024617 0.6564 0.00030177 459.7427337762283 122.51 0.73978 117.96 117.71 118.45 -4.5476 34 20 2 0 0 0 0.22334 1 24209 24209 36.044 1.9418 1 2193500 40738 7354 27151 27167 40065 40065 0.008540685610341825 SELEHWRI 8 Unmodified _SELEHWRI_ 0 0 0 ENST00000287263.8_1_8:37717309-37717468:-|nuORF ENST00000287263.8_1_8:37717309-37717468:-|nuORF ENST00000287263.8_1_8:37717309-37717468:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.072998046875 3 357.185691 1068.53524 0.20015 7.1491E-05 -0.20583 -7.3521E-05 -0.0056827 -2.0298E-06 357.18555463695174 64.266 0.74159 60.85 60.598 61.34 -3.4158 41 20 3 0 0 0 1.0265 1 11992 11992 3.9444 0 1 1742300 40739 8461 27152 27168 40066 40066 0.0037168815770201036 SELELWGK 8 Unmodified _SELELWGK_ 0 0 0 REV__ENSG00000163930|ENST00000460680|BAP1 REV__ENSG00000163930|ENST00000460680|BAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7704162597656 2 481.2531 960.491647 0.28221 0.00013581 0.1207 5.8085E-05 0.40291 0.0001939 481.25311837758886 70.408 0.77477 66.941 66.569 67.343 -3.467 34 21 2 0 0 0 8448 1 13303 13303 0.25148 0 1 2969000 + 40740 17629 27153 27169 40067 40067 0.00982078660570096 SELEQYFTA 9 Unmodified _SELEQYFTA_ 0 0 0 ENST00000478619.1_1_3:50374315-50374750:-|nuORF;nc|ENSG00000068028|Q9NS23-9|RASSF1;nc|ENSG00000068028|Q9NS23-4|RASSF1 ENST00000478619.1_1_3:50374315-50374750:-|nuORF ENST00000478619.1_1_3:50374315-50374750:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.770263671875 2 544.250754 1086.48696 0.33232 0.00018086 0.049813 2.7111E-05 0.38213 0.00020798 544.2507368802873 128.94 0.70129 128.94 128.56 129.26 0 39 19 3 0 0 0 0.10047 1 25462 25462 71.922 43.435 1 5783500 40741 10323 27154 27170 40068 40068 -0.05282850272851647 SELEQYFTA 9 Unmodified _SELEQYFTA_ 0 0 0 ENST00000478619.1_1_3:50374315-50374750:-|nuORF;nc|ENSG00000068028|Q9NS23-9|RASSF1;nc|ENSG00000068028|Q9NS23-4|RASSF1 ENST00000478619.1_1_3:50374315-50374750:-|nuORF ENST00000478619.1_1_3:50374315-50374750:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7831420898438 2 544.250754 1086.48696 0.21274 0.00011578 -0.52087 -0.00028349 -0.30814 -0.0001677 544.2505296538685 133.82 0.56888 129.18 128.92 129.49 -4.6399 25 15 2 0 0 0 0.25296 1 26412 26412 37.075 35.147 1 2740400 40742 10323 27154 27170 40069 40069 -0.05282850272851647 SELEQYFTA 9 Unmodified _SELEQYFTA_ 0 0 0 ENST00000478619.1_1_3:50374315-50374750:-|nuORF;nc|ENSG00000068028|Q9NS23-9|RASSF1;nc|ENSG00000068028|Q9NS23-4|RASSF1 ENST00000478619.1_1_3:50374315-50374750:-|nuORF ENST00000478619.1_1_3:50374315-50374750:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7800903320312 2 544.250754 1086.48696 0.066984 3.6456E-05 0.98665 0.00053698 1.0536 0.00057344 544.25087435668 134.1 0.82668 129.22 128.72 129.54 -4.8726 42 23 3 0 0 0 0.35202 1 25750 25750 45.7 25.246 1 2587700 40743 10323 27154 27170 40070 40070 -0.05282850272851647 SELEQYFTA 9 Unmodified _SELEQYFTA_ 0 0 0 ENST00000478619.1_1_3:50374315-50374750:-|nuORF;nc|ENSG00000068028|Q9NS23-9|RASSF1;nc|ENSG00000068028|Q9NS23-4|RASSF1 ENST00000478619.1_1_3:50374315-50374750:-|nuORF ENST00000478619.1_1_3:50374315-50374750:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7915649414062 2 544.250754 1086.48696 0.29062 0.00015817 0.27534 0.00014985 0.56596 0.00030802 544.2507869684947 133.94 0.63947 129.12 128.77 129.41 -4.8175 28 17 2 0 0 0 0.35202 1 25806 25806 38.176 28.102 1 3363600 40744 10323 27154 27170 40071 40071 -0.05282850272851647 SELEVKNLY 9 Unmodified _SELEVKNLY_ 0 0 0 REV__ENST00000450021.1_1_2:183936291-183936849:-|nuORF REV__ENST00000450021.1_1_2:183936291-183936849:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.79296875 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 48.246 1 45.377 44.877 45.877 -2.869 0 0 0 0.20294 1 9124 9124 22.736 3.3743 1 + 40745 21792 27155 27171 40072 40072 0.022500020322468117 SELFKERA 8 Unmodified _SELFKERA_ 0 0 0 nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;ENST00000474955.5_1_19:19767512-19770537:-|nuORF nc|ENSG00000105726|Q9HD20-2|ATP13A1 nc|ENSG00000105726|Q9HD20-2|ATP13A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2633361816406 2 490.263999 978.513445 -0.13005 -6.3758E-05 0.0030815 1.5107E-06 -0.12697 -6.2248E-05 490.26381972535773 64.046 0.41918 64.046 63.852 64.271 0 25 11 3 0 0 0 0.56049 1 12309 12309 24.674 0 1 5356300 40746 2337 27156 27172 40073 40073 0.023328834091330464 SELFTEDQLNI 11 Unmodified _SELFTEDQLNI_ 0 0 0 REV__nc|ENSG00000089472|Q9BQS7-4|HEPH REV__nc|ENSG00000089472|Q9BQS7-4|HEPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.215576171875 3 436.882114 1307.62451 -0.1134 -4.9543E-05 -3.2308 -0.0014115 -3.3442 -0.001461 437.21594336711735 101.62 0.44769 97.458 97.158 97.606 -4.1594 15 12 2 0 0 0 0.78947 1 19935 19935 5.0475 0 1 876380 + 40747 14530 27157 27173 40074 40074 -0.016995664640944597 SELFTEDQLNI 11 Unmodified _SELFTEDQLNI_ 0 0 0 REV__nc|ENSG00000089472|Q9BQS7-4|HEPH REV__nc|ENSG00000089472|Q9BQS7-4|HEPH MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 436.882114 1307.62451 -0.1134 -4.9543E-05 -3.2308 -0.0014115 -3.3442 -0.001461 437.21594336711735 101.62 0.44769 97.458 97.158 97.606 -4.1594 -0.18126 -3.6426E-05 NaN 5.0475 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 876380 + 40748 14530 27157 27173 -0.016995664640944597 SELGPWRA 8 Unmodified _SELGPWRA_ 0 0 0 REV__ENST00000466237.1_1_22:41911770-41917430:+|nuORF REV__ENST00000466237.1_1_22:41911770-41917430:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23797607421875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 67.818 1 64.492 63.992 64.992 -3.3268 0 0 0 0.21452 1 12792 12792 13.508 0 1 + 40749 21967 27158 27174 40075 40075 0.00036345066178000707 SELGQRVE 8 Unmodified _SELGQRVE_ 0 0 0 nc|ENSG00000165782|Q86T03-3|PIP4P1 nc|ENSG00000165782|Q86T03-3|PIP4P1 nc|ENSG00000165782|Q86T03-3|PIP4P1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2409973144531 2 459.237981 916.461409 0.27215 0.00012498 0.22147 0.00010171 0.49362 0.00022669 459.238045444905 28.184 1.3673 26.188 25.396 26.763 -1.9962 128 38 4 0 0 0 0.74398 1 4604 4604 7.9102 0 1 18028000 40750 12435 27159 27175 40076 40076 -0.00016280004615509824 SELGWAPR 8 Unmodified _SELGWAPR_ 0 0 0 ENST00000219271.3_1_16:58059493-58060384:+|nuORF ENST00000219271.3_1_16:58059493-58060384:+|nuORF ENST00000219271.3_1_16:58059493-58060384:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23907470703125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 55.157 1 55.157 54.657 55.657 0 0 0 0 0.21452 1 10524 10524 13.508 0 1 40751 8126 27160 27176 40077 40077 0.00036345066178000707 SELGWVSAA 9 Unmodified _SELGWVSAA_ 0 0 0 nc|ENSG00000062524|P29376-3|LTK nc|ENSG00000062524|P29376-3|LTK nc|ENSG00000062524|P29376-3|LTK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23095703125 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 23.943 1 22.154 21.654 22.654 -1.7886 0 0 0 0.23508 1 3874 3874 7.9102 0 1 40752 12221 27161 27177 40078 40078 -0.017787808905723068 SELHELIKP 9 Unmodified _SELHELIKP_ 0 0 0 REV__nc|ENSG00000108963|Q9BZG8-2|DPH1 REV__nc|ENSG00000108963|Q9BZG8-2|DPH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2777709960938 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 154.4 1 149.18 148.68 149.68 -5.2209 0 0 0 0.21065 1 29936 29936 20.454 3.3671 1 + 40753 15147 27162 27178 40079 40079 0.056900121317767116 SELHPADNEL 10 Unmodified _SELHPADNEL_ 0 0 0 REV__PRG3|p.H19R|1|0.2|ENSG00000156575|chr11:57380653-57380653|T/C|missense_variant REV__PRG3|p.H19R|1|0.2|ENSG00000156575|chr11:57380653-57380653|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20709228515625 3 375.512132 1123.51457 -0.22966 -8.624E-05 -0.63633 -0.00023895 -0.86599 -0.00032519 375.51172631568284 17.277 0.80731 17.277 16.96 17.767 0 33 22 2 0 0 0 0.87285 1 2751 2751 12.175 4.0192 1 837550 + 40754 17263 27163 27179 40080 40080 -0.04224947012630764 SELIKLKKK 9 Unmodified _SELIKLKKK_ 0 0 0 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7887573242188 2 543.865892 1085.71723 NaN NaN NaN NaN NaN NaN NaN 162.64 1 157.45 156.95 157.95 -5.1878 0 0 0 0.1963 1 31591 31591 0.073264 0 1 + 40755 15100 27164 27180 40081 40081 0.1778002785060835 SELIPGTEVV 10 Unmodified _SELIPGTEVV_ 0 0 0 tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1 tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1 tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2813720703125 2 522.284597 1042.55464 NaN NaN NaN NaN NaN NaN NaN 68.241 1 64.85 64.35 65.35 -3.3903 0 0 0 0.22588 1 12879 12879 10.074 2.1638 1 40756 26501 27165 27181 40082 40082 0.03506599657953302 SELIQGDPG 9 Unmodified _SELIQGDPG_ 0 0 0 nc|ENSG00000142609|Q9C0B2-2|CFAP74;nc|ENSG00000142609|Q9C0B2|CFAP74;ENSG00000142609|ENST00000682832|CFAP74;ENST00000270720.11_1_1:1887019-1905630:-|nuORF nc|ENSG00000142609|Q9C0B2-2|CFAP74 nc|ENSG00000142609|Q9C0B2-2|CFAP74 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2249450683594 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 45.171 1 45.171 44.671 45.671 0 0 0 0 0.23508 1 8485 8485 10.824 0 1 40757 4430 27166 27182 40083 40083 -0.0261138861579866 SELIQGDPG 9 Unmodified _SELIQGDPG_ 0 0 0 nc|ENSG00000142609|Q9C0B2-2|CFAP74;nc|ENSG00000142609|Q9C0B2|CFAP74;ENSG00000142609|ENST00000682832|CFAP74;ENST00000270720.11_1_1:1887019-1905630:-|nuORF nc|ENSG00000142609|Q9C0B2-2|CFAP74 nc|ENSG00000142609|Q9C0B2-2|CFAP74 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22406005859375 2 458.224539 914.434526 -0.040083 -1.8367E-05 0.60919 0.00027915 0.56911 0.00026078 458.2248023389424 48.162 0.45258 45.22 44.972 45.425 -2.9421 17 12 2 0 0 0 0.49624 1 8760 8760 1.2148 0.94944 1 713540 40758 4430 27166 27182 40084 40084 -0.0261138861579866 SELKHSSYQ 9 Unmodified _SELKHSSYQ_ 0 0 0 ENSG00000132464|ENST00000396073|ENAM;ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant ENSG00000132464|ENST00000396073|ENAM ENSG00000132464|ENST00000396073|ENAM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2781982421875 2 539.76182 1077.50909 0.60509 0.00032661 1.4066 0.00075921 2.0117 0.0010858 539.7627606668727 29.808 1.0502 27.734 27.241 28.291 -2.0743 97 29 4 0 0 0 0.6427 1 5126 5126 6.2058 0 1 13015000 40759 3729 27167 27183 40085 40085 -0.02656625804434043 SELLALAPD 9 Unmodified _SELLALAPD_ 0 0 0 nc|ENSG00000121900|Q969K7-3|TMEM54;nc|ENSG00000121900|Q969K7-2|TMEM54;ENSG00000121900|ENST00000373463|TMEM54 nc|ENSG00000121900|Q969K7-3|TMEM54 nc|ENSG00000121900|Q969K7-3|TMEM54 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2558288574219 2 464.752933 927.491313 -0.067447 -3.1346E-05 2.0187 0.00093821 1.9513 0.00090687 464.7534155455616 44.068 0.55734 41.32 41.045 41.602 -2.7475 19 15 2 0 0 0 0.58077 1 7983 7983 14.838 4.7643 1 424690 40760 3196 27168 27184 40086 40086 0.024666589407047468 SELMSDFEMD 10 Unmodified _SELMSDFEMD_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2933959960938 2 602.230847 1202.44714 NaN NaN NaN NaN NaN NaN NaN 46.68 1 43.814 43.314 44.314 -2.8666 0 0 0 2.8426 1 8502 8502 0.013265 0 1 40761 2935 27169 27185 40087 40087 -0.1459848133010837 SELNEDDRRKV 11 Unmodified _SELNEDDRRKV_ 0 0 0 ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7503356933594 3 454.232028 1359.67426 -0.57411 -0.00026078 -0.12346 -5.6081E-05 -0.69757 -0.00031686 454.2316907288697 16.193 0.27155 14.971 14.855 15.126 -1.2219 10 7 2 0 0 0 0.96147 1 2325 2325 5.0475 0 1 500690 40762 124 27170 27186 40088 40088 0.008805612645574001 SELNLKIG 8 Unmodified _SELNLKIG_ 0 0 0 tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1 tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1 tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21826171875 2 437.255643 872.496732 0.41404 0.00018104 -0.56623 -0.00024759 -0.15219 -6.6547E-05 437.2554157216089 29.917 0.44902 27.8 27.599 28.048 -2.1167 20 12 2 0 0 0 0.58432 1 5425 5425 23.148 0 1 611070 40763 26080 27171 27187 40089 40089 0.05538382523184282 SELPGAFEA 9 Unmodified _SELPGAFEA_ 0 0 0 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5404357910156 2 460.721633 919.428712 0.49085 0.00022614 -0.30362 -0.00013988 0.18723 8.6259E-05 460.7214108090826 105.22 1.4992 105.22 104.55 106.05 0 112 42 4 0 0 0 0.13708 1 20673 20673 46.021 13.715 1 27749000 40764 3423 27172 27188 40090 40090 -0.03422487127477325 SELPGAFEA 9 Unmodified _SELPGAFEA_ 0 0 0 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23248291015625 2 460.721633 919.428712 -0.49328 -0.00022726 0.66068 0.00030439 0.1674 7.7125E-05 460.72186691216376 109.81 1.4259 105.43 104.78 106.21 -4.3776 125 40 4 0 0 0 0.0019884 1 21658 21658 120.45 65.677 1 43237000 40765 3423 27172 27188 40091 40091 -0.03422487127477325 SELPGAFEA 9 Unmodified _SELPGAFEA_ 0 0 0 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.53460693359375 2 460.721633 919.428712 -0.24847 -0.00011448 0.4715 0.00021723 0.22303 0.00010275 460.7217719504747 109.94 1.6518 105.49 104.75 106.4 -4.4518 118 46 4 0 0 0 0.55979 1 21196 21196 15.847 15.847 1 44497000 40766 3423 27172 27188 40092 40092 -0.03422487127477325 SELPGAFEA 9 Unmodified _SELPGAFEA_ 0 0 0 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23260498046875 2 460.721633 919.428712 0.64645 0.00029783 -0.46963 -0.00021637 0.17682 8.1464E-05 460.72134961259496 109.76 1.5394 105.57 104.77 106.31 -4.1826 118 43 4 0 0 0 0.017753 1 21136 21136 108 39.916 1 33914000 40767 3423 27172 27188 40093 40093 -0.03422487127477325 SELPPRYQLEA 11 Unmodified _SELPPRYQLEA_ 0 0 0 REV__nc|ENSG846|Q9YNA8|ERVK-19_gag REV__nc|ENSG846|Q9YNA8|ERVK-19_gag MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 434.9051208496094 3 434.894465 1301.66157 NaN NaN NaN NaN NaN NaN NaN 23.693 1 21.905 21.405 22.405 -1.7886 0 0 0 0.23698 1 3823 3823 1.3296 0 1 + 40768 24333 27173 27189 40094 40094 0.022801498723538316 SELPQERSP 9 Unmodified _SELPQERSP_ 0 0 0 REV__PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant REV__PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2619018554688 2 521.76182 1041.50909 0.3121 0.00016284 1.0098 0.00052686 1.3219 0.00068971 521.7616027685823 140.03 0.13872 135.18 135.05 135.19 -4.8492 6 3 2 0 0 0 0.58804 1 26981 26981 13.906 0.39817 1 1337100 + 40769 19723 27174 27190 40095 40095 -0.010006258044313654 SELPVSEVA 9 Unmodified _SELPVSEVA_ 0 0 0 nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2487487792969 2 465.742565 929.470577 0.011162 5.1985E-06 -0.34734 -0.00016177 -0.33618 -0.00015657 465.74246438346637 94.985 0.80299 91.104 90.708 91.511 -3.881 40 22 2 0 0 0 0.12295 1 18249 18249 37.974 1.9298 1 2520900 40770 1116 27175 27191 40096 40096 0.003020685610522378 SELPVSEVA 9 Unmodified _SELPVSEVA_ 0 0 0 nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.742565 929.470577 -0.054748 -2.5499E-05 -0.073415 -3.4192E-05 -0.12816 -5.9691E-05 465.7425214501036 91.049 0.70656 91.049 90.651 91.357 0 0.010366 9.4374E-05 NaN 37.974 36 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3256400 40771 1116 27175 27191 0.003020685610522378 SELPVSEVA 9 Unmodified _SELPVSEVA_ 0 0 0 nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 465.742565 929.470577 -0.027991 -1.3037E-05 -0.13669 -6.3664E-05 -0.16468 -7.6701E-05 465.74249168600807 95.018 0.66861 90.968 90.569 91.238 -4.0496 -0.070742 3.543E-05 NaN 37.974 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3071900 40772 1116 27175 27191 0.003020685610522378 SELPVSGQL 9 Unmodified _SELPVSGQL_ 0 0 0 nc|ENSG00000123342|Q99542-5|MMP19;ENSG00000123342|ENST00000322569|MMP19 nc|ENSG00000123342|Q99542-5|MMP19 nc|ENSG00000123342|Q99542-5|MMP19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25054931640625 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 95.596 1 91.546 91.046 92.046 -4.0496 0 0 0 0.15147 1 18738 18738 30.225 0 1 40773 3260 27176 27192 40097 40097 0.01945774797957256 SELPVTISA 9 Unmodified _SELPVTISA_ 0 0 0 REV__nc|ENSG00000100083|Q9UJY5-4|GGA1 REV__nc|ENSG00000100083|Q9UJY5-4|GGA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2335205078125 2 458.752933 915.491313 0.62733 0.00028779 -0.53378 -0.00024487 0.09355 4.2916E-05 458.75267052875205 102.98 0.58405 102.98 102.65 103.24 0 38 16 4 0 0 0 0.63326 1 20230 20230 10.824 0 1 3392400 + 40774 14664 27177 27193 40098 40098 0.03018658940709429 SELQARETF 9 Unmodified _SELQARETF_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2713012695312 2 540.769645 1079.52474 -0.011171 -6.0411E-06 0.17285 9.3472E-05 0.16168 8.7431E-05 540.7697104032145 59.875 0.66818 59.875 59.577 60.245 0 35 18 3 0 0 0 0.0070869 1 11509 11509 110.79 41.688 1 3931700 40775 6567 27178 27194 40099 40099 -0.011843392873970515 SELQARETF 9 Unmodified _SELQARETF_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2711791992188 2 540.769645 1079.52474 0.27058 0.00014632 -0.18168 -9.8244E-05 0.088909 4.8079E-05 540.7695311515962 62.879 0.65018 59.917 59.571 60.221 -2.9614 43 18 3 0 0 0 2.9164E-05 3 12144 12116;12144;12178 132.38 53.652 1 5922800 40776 6567 27178 27194 40100;40101;40102 40101 -0.011843392873970515 SELQARETF 9 Unmodified _SELQARETF_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2709350585938 2 540.769645 1079.52474 0.24822 0.00013423 -0.26248 -0.00014194 -0.014258 -7.7104E-06 540.7694639880564 63.356 0.71125 59.941 59.541 60.252 -3.4158 39 19 3 0 0 0 2.9164E-05 2 11848 11804;11848 132.38 53.652 1 5382300 40777 6567 27178 27194 40103;40104 40104 -0.011843392873970515 SELQARETF 9 Unmodified _SELQARETF_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2600708007812 2 540.769645 1079.52474 0.32696 0.00017681 -0.0077799 -4.2072E-06 0.31918 0.00017261 540.7694742032816 63.209 0.82649 59.953 59.436 60.263 -3.2567 53 23 3 0 0 0 0.00017431 3 11880 11828;11863;11880 121.35 48.656 1 4652200 40778 6567 27178 27194 40105;40106;40107 40107 -0.011843392873970515 SELQDLEME 9 Unmodified _SELQDLEME_ 0 0 0 nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A;CCDC88A|p.L1472Ffs*8|1|0.35|ENSG00000115355|chr2:55303124-55303125|-/A|frameshift_variant;CCDC88A|p.N1003Kfs*3|1|0.32|ENSG00000115355|chr2:55322681-55322682|-/T|frameshift_variant nc|ENSG00000115355|Q3V6T2-5|CCDC88A nc|ENSG00000115355|Q3V6T2-5|CCDC88A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.776123046875 2 547.239529 1092.46451 -0.20115 -0.00011008 -0.30888 -0.00016903 -0.51003 -0.00027911 547.7409577341865 37.113 0.34178 34.645 34.5 34.841 -2.4688 14 9 2 0 0 0 0.38188 1 6870 6870 26.884 0 1 693210 40779 2849 27179 27195 40108 40108 -0.0780281773279512 SELQKIHRA 9 Unmodified _SELQKIHRA_ 0 0 0 nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1 nc|ENSG00000291287|Q5SQ80|ANKRD20A2P nc|ENSG00000291287|Q5SQ80|ANKRD20A2P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2609252929688 2 541.309272 1080.60399 0.29559 0.00016001 -0.17813 -9.6421E-05 0.11747 6.3587E-05 541.3091257200873 19.231 0.31424 17.834 17.641 17.955 -1.3966 19 8 3 0 0 0 0.028199 1 3163 3163 114.19 76.011 1 2327500 40780 7955 27180 27196 40109 40109 0.06691352457414723 SELQKIHRA 9 Unmodified _SELQKIHRA_ 0 0 0 nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1 nc|ENSG00000291287|Q5SQ80|ANKRD20A2P nc|ENSG00000291287|Q5SQ80|ANKRD20A2P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2836303710938 2 541.309272 1080.60399 -0.27024 -0.00014628 0.57966 0.00031378 0.30942 0.00016749 541.3094895015405 19.133 0.28284 17.808 17.648 17.931 -1.3251 18 7 3 0 0 0 0.027537 1 2894 2894 110.55 92.406 1 4404900 40781 7955 27180 27196 40110 40110 0.06691352457414723 SELQKIHRA 9 Unmodified _SELQKIHRA_ 0 0 0 nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1 nc|ENSG00000291287|Q5SQ80|ANKRD20A2P nc|ENSG00000291287|Q5SQ80|ANKRD20A2P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2619018554688 2 541.309272 1080.60399 -0.93207 -0.00050454 0.95846 0.00051882 0.02639 1.4285E-05 541.3097912220172 19.392 0.31123 17.757 17.634 17.946 -1.6351 15 8 2 0 0 0 0.030811 1 2928 2928 80.676 55.685 1 1670500 40782 7955 27180 27196 40111 40111 0.06691352457414723 SELQKIHRA 9 Unmodified _SELQKIHRA_ 0 0 0 nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1 nc|ENSG00000291287|Q5SQ80|ANKRD20A2P nc|ENSG00000291287|Q5SQ80|ANKRD20A2P MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.309272 1080.60399 0.24458 0.00013239 -0.021645 -1.1717E-05 0.22293 0.00012067 541.309234869627 17.746 0.28913 17.746 17.589 17.878 0 -0.049835 -0.0001009 NaN 110.55 20 7 4 NaN NaN NaN NaN 0 NaN NaN 0 5461100 40783 7955 27180 27196 0.06691352457414723 SELQNKLF 8 Unmodified _SELQNKLF_ 0 0 0 REV__nc|ENSG00000176087|L0R6Q1|SLC35A4 REV__nc|ENSG00000176087|L0R6Q1|SLC35A4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.276123046875 2 489.766374 977.518196 0.30506 0.00014941 -0.14266 -6.9868E-05 0.1624 7.954E-05 489.7663241177722 74.095 0.62267 70.419 70.14 70.763 -3.6764 27 17 2 0 0 0 0.96284 1 13971 13971 0.52476 0 1 2580500 + 40784 24183 27181 27197 40112 40112 0.02853767551891906 SELQVHSA 8 Unmodified _SELQVHSA_ 0 0 0 nc|ENSG00000130695|Q6P2H3|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3-4|CEP85 nc|ENSG00000130695|Q6P2H3|CEP85 nc|ENSG00000130695|Q6P2H3|CEP85 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2225036621094 2 435.719424 869.424296 0.21932 9.5563E-05 -1.1148 -0.00048572 -0.89543 -0.00039016 435.7189179759573 26.375 0.71633 26.375 26.123 26.839 0 57 20 4 0 0 0 0.36038 1 4596 4596 34.102 12.356 1 32334000 40785 3626 27182 27198 40113 40113 -0.015639515503835355 SELRNFPP 8 Unmodified _SELRNFPP_ 0 0 0 nc|ENSG00000138101|O60941-3|DTNB nc|ENSG00000138101|O60941-3|DTNB nc|ENSG00000138101|O60941-3|DTNB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2546081542969 2 480.250892 958.48723 0.13956 6.7023E-05 -0.71457 -0.00034317 -0.57501 -0.00027615 480.25077959478546 61.967 0.8824 58.598 58.149 59.032 -3.3694 59 24 3 0 0 0 0.73426 1 11492 11492 9.3474 0 1 3692700 40786 12351 27183 27199 40114 40114 0.006326142376565258 SELSQNISA 9 Unmodified _SELSQNISA_ 0 0 0 ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;WDR11|p.V841Cfs*15|1|0.07|ENSG00000120008|chr10:120900034-120900034|G/-|frameshift_variant;WDR11|p.Q977Sfs*9|1|0.27|ENSG00000120008|chr10:120903226-120903227|-/T|frameshift_variant;WDR11|p.L1134Gfs*5|1|0.26|ENSG00000120008|chr10:120905977-120905978|CC/-|frameshift_variant;ENSG00000120008|ENST00000263461|WDR11 ENST00000478567.5_1_10:122645388-122659588:+|nuORF ENST00000478567.5_1_10:122645388-122659588:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 474.2320251464844 2 474.735271 947.45599 0.040102 1.9038E-05 0.075817 3.5993E-05 0.11592 5.5031E-05 474.7353475972903 56.709 0.55879 53.533 53.262 53.821 -3.1761 37 15 4 0 0 0 0.65155 1 10531 10531 15.847 6.4997 1 4463800 40787 3113 27184 27200 40115 40115 -0.01984003587085681 SELSQNISA 9 Unmodified _SELSQNISA_ 0 0 0 ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;WDR11|p.V841Cfs*15|1|0.07|ENSG00000120008|chr10:120900034-120900034|G/-|frameshift_variant;WDR11|p.Q977Sfs*9|1|0.27|ENSG00000120008|chr10:120903226-120903227|-/T|frameshift_variant;WDR11|p.L1134Gfs*5|1|0.26|ENSG00000120008|chr10:120905977-120905978|CC/-|frameshift_variant;ENSG00000120008|ENST00000263461|WDR11 ENST00000478567.5_1_10:122645388-122659588:+|nuORF ENST00000478567.5_1_10:122645388-122659588:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 474.735271 947.45599 -0.11843 -5.6222E-05 0.044035 2.0905E-05 -0.074393 -3.5317E-05 474.73526726101903 53.477 0.60048 53.477 53.178 53.779 0 -0.0029004 -7.4848E-05 NaN 15.847 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3362700 40788 3113 27184 27200 -0.01984003587085681 SELSQNISA 9 Unmodified _SELSQNISA_ 0 0 0 ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;WDR11|p.V841Cfs*15|1|0.07|ENSG00000120008|chr10:120900034-120900034|G/-|frameshift_variant;WDR11|p.Q977Sfs*9|1|0.27|ENSG00000120008|chr10:120903226-120903227|-/T|frameshift_variant;WDR11|p.L1134Gfs*5|1|0.26|ENSG00000120008|chr10:120905977-120905978|CC/-|frameshift_variant;ENSG00000120008|ENST00000263461|WDR11 ENST00000478567.5_1_10:122645388-122659588:+|nuORF ENST00000478567.5_1_10:122645388-122659588:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 474.735271 947.45599 -0.18297 -8.6863E-05 0.29086 0.00013808 0.10789 5.1219E-05 474.7354498624712 56.308 0.55148 53.414 53.133 53.685 -2.8944 -0.066259 0.00015951 NaN 15.847 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4596100 40789 3113 27184 27200 -0.01984003587085681 SELSQNISA 9 Unmodified _SELSQNISA_ 0 0 0 ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;WDR11|p.V841Cfs*15|1|0.07|ENSG00000120008|chr10:120900034-120900034|G/-|frameshift_variant;WDR11|p.Q977Sfs*9|1|0.27|ENSG00000120008|chr10:120903226-120903227|-/T|frameshift_variant;WDR11|p.L1134Gfs*5|1|0.26|ENSG00000120008|chr10:120905977-120905978|CC/-|frameshift_variant;ENSG00000120008|ENST00000263461|WDR11 ENST00000478567.5_1_10:122645388-122659588:+|nuORF ENST00000478567.5_1_10:122645388-122659588:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 474.735271 947.45599 0.030496 1.4478E-05 0.090992 4.3197E-05 0.12149 5.7675E-05 474.735246840606 56.686 0.59462 53.496 53.266 53.861 -3.1895 0.016269 -3.0264E-05 NaN 15.847 32 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4608400 40790 3113 27184 27200 -0.01984003587085681 SELSRTYLP 9 Unmodified _SELSRTYLP_ 0 0 0 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2825927734375 2 533.282389 1064.55022 -0.053381 -2.8467E-05 0.46251 0.00024665 0.40913 0.00021818 533.282578105817 90.568 0.91798 90.568 90.015 90.933 0 76 25 4 0 0 0 0.11219 3 17679 17635;17679;17733 51.63 25.289 1 19212000 40791 3896 27185 27201 40116;40117;40118 40117 0.02053135235018999 SELSRTYLP 9 Unmodified _SELSRTYLP_ 0 0 0 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2824096679688 2 533.282389 1064.55022 0.10217 5.4485E-05 0.071192 3.7966E-05 0.17336 9.245E-05 533.2823877462582 94.623 1.1955 90.632 89.862 91.058 -3.9907 93 33 4 0 0 0 0.048406 4 18561 18463;18512;18561;18614 71.708 35.581 1 36606000 40792 3896 27185 27201 40119;40120;40121;40122 40121 0.02053135235018999 SELSRTYLP 9 Unmodified _SELSRTYLP_ 0 0 0 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.282470703125 2 533.282389 1064.55022 0.54775 0.0002921 -0.43132 -0.00023001 0.11643 6.209E-05 533.2820457707753 94.681 1.0863 90.49 89.842 90.928 -4.1911 92 30 4 0 0 0 0.088942 3 18099 18002;18052;18099 59.368 26.583 1 34282000 40793 3896 27185 27201 40123;40124;40125 40125 0.02053135235018999 SELSRTYLP 9 Unmodified _SELSRTYLP_ 0 0 0 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2824096679688 2 533.282389 1064.55022 0.084383 4.5E-05 0.034859 1.859E-05 0.11924 6.3589E-05 533.2823400911914 94.421 1.1362 90.577 89.851 90.987 -3.844 95 32 4 0 0 0 0.10083 4 18111 18024;18069;18111;18156 55.503 22.717 1 25601000 40794 3896 27185 27201 40126;40127;40128;40129 40128 0.02053135235018999 SELSSNPAA 9 Unmodified _SELSSNPAA_ 0 0 0 nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-2|OGA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 438.2276916503906 2 438.208889 874.403226 0.28568 0.00012519 -0.17031 -7.4633E-05 0.11536 5.0553E-05 438.2087641354076 30.439 0.7072 28.547 28.171 28.878 -1.8928 43 19 3 0 0 0 0.54354 1 5281 5281 16.942 2.104 1 4639400 40795 7451 27186 27202 40130 40130 -0.03899961649904071 SELSSNPAA 9 Unmodified _SELSSNPAA_ 0 0 0 nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-2|OGA MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 438.208889 874.403226 0.21344 9.3531E-05 -0.12845 -5.6287E-05 0.084991 3.7244E-05 438.20879141407346 28.608 0.80551 28.608 28.215 29.021 0 0.059455 8.448E-05 NaN 16.942 56 22 3 NaN NaN NaN NaN 0 NaN NaN 0 7119700 40796 7451 27186 27202 -0.03899961649904071 SELSSNPAA 9 Unmodified _SELSSNPAA_ 0 0 0 nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-2|OGA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 438.208889 874.403226 0.32049 0.00014044 -0.29556 -0.00012952 0.024937 1.0928E-05 438.20870910264415 30.626 0.84964 28.509 28.011 28.861 -2.1167 -0.039299 -6.1977E-05 NaN 16.942 54 23 3 NaN NaN NaN NaN 0 NaN NaN 0 5184900 40797 7451 27186 27202 -0.03899961649904071 SELSSNPAA 9 Unmodified _SELSSNPAA_ 0 0 0 nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-2|OGA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 438.208889 874.403226 0.36761 0.00016109 -0.29471 -0.00012915 0.0729 3.1946E-05 438.2087094824198 30.605 0.73893 28.53 28.074 28.813 -2.0743 -0.018118 -6.1239E-05 NaN 16.942 49 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2443900 40798 7451 27186 27202 -0.03899961649904071 SELSSRLQ 8 Unmodified _SELSSRLQ_ 0 0 0 ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3;ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3 ENST00000414786.6_1_22:51113069-51169737:+|nuORF ENST00000414786.6_1_22:51113069-51169737:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2464904785156 2 460.245806 918.47706 0.35502 0.0001634 1.6874 0.0007766 2.0424 0.00094 460.24664539940613 34.498 0.45621 32.282 32.055 32.511 -2.2158 20 12 2 0 0 0 0.62642 1 6071 6071 20.454 0 1 691300 40799 9607 27187 27203 40131 40131 0.014560065124328503 SELTLSSQP 9 Unmodified _SELTLSSQP_ 0 0 0 REV__nc|ENSG00000121101|Q8IWB6-2|TEX14 REV__nc|ENSG00000121101|Q8IWB6-2|TEX14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24578857421875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 103.31 1 98.962 98.462 99.462 -4.346 0 0 0 0.16428 1 19783 19783 28.487 0 1 + 40800 24016 27188 27204 40132 40132 -0.005428329272717747 SELTQNIL 8 Unmodified _SELTQNIL_ 0 0 0 REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2341003417969 2 459.250557 916.486562 -0.10787 -4.9537E-05 1.1328 0.00052024 1.0249 0.0004707 459.25120981074696 102.28 0.87569 98.097 97.785 98.66 -4.1861 53 24 3 0 0 0 0.64227 1 20095 20095 19.439 0 1 3500700 + 40801 17048 27189 27205 40133 40133 0.024977747979505693 SELTSPKEA 9 Unmodified _SELTSPKEA_ 0 0 0 ASH1L|p.L1180P|1|0.1|ENSG00000116539|chr1:155479331-155479331|A/G|missense_variant ASH1L|p.L1180P|1|0.1|ENSG00000116539|chr1:155479331-155479331|A/G|missense_variant ASH1L|p.L1180P|1|0.1|ENSG00000116539|chr1:155479331-155479331|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.235595703125 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 103.2 1 99.178 98.678 99.678 -4.0212 0 0 0 0.14843 1 19842 19842 30.637 2.1497 1 40802 233 27190 27206 40134 40134 -0.005428329272831434 SELWLGPN 8 Unmodified _SELWLGPN_ 0 0 0 REV__ENSG00000101161|ENST00000266079|PRPF6 REV__ENSG00000101161|ENST00000266079|PRPF6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2243957519531 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 31.364 1 31.364 30.864 31.864 0 0 0 0 0.21452 1 5662 5662 13.508 0 1 + 40803 14764 27191 27207 40135 40135 -0.010864770279454206 SELWMTGMWIC 11 Unmodified _SELWMTGMWIC_ 0 0 0 REV__ENST00000454136.7_1_6:32363950-32364028:-|nuORF REV__ENST00000454136.7_1_6:32363950-32364028:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 452.8634338378906 3 452.864355 1355.57124 NaN NaN NaN NaN NaN NaN NaN 9.5336 1 8.499 7.999 8.999 -1.0347 0 0 0 0.23698 1 979 979 0 0 1 + 40804 21836 27192 27208 40136 40136 -0.09232682043580098 SEMASNKF 8 Unmodified _SEMASNKF_ 0 0 0 PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000113448|Q08499-11|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant;ENSG00000113448|ENST00000340635|PDE4D PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000113448|Q08499-11|PDE4D;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2230529785156 2 457.207835 912.401117 -0.50159 -0.00022933 0.60138 0.00027496 0.099793 4.5626E-05 457.2080639183091 36.073 0.59824 33.68 33.381 33.979 -2.3938 38 16 3 0 0 0 0.10891 2 6646 6641;6646 61.357 27.255 1 16870000 40805 6923;12289;2743 27193 27209 40137;40138 40138 -0.05858713659347359 SEMASNKF 8 Unmodified _SEMASNKF_ 0 0 0 PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000113448|Q08499-11|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant;ENSG00000113448|ENST00000340635|PDE4D PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000113448|Q08499-11|PDE4D;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2270812988281 2 457.207835 912.401117 0.086762 3.9668E-05 0.071109 3.2511E-05 0.15787 7.218E-05 457.20783720829064 35.949 0.63177 33.697 33.433 34.065 -2.2527 40 17 3 0 0 0 0.07389 1 6350 6350 71.134 37.031 1 17646000 40806 6923;12289;2743 27193 27209 40139 40139 -0.05858713659347359 SEMASNKF 8 Unmodified _SEMASNKF_ 0 0 0 PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000113448|Q08499-11|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant;ENSG00000113448|ENST00000340635|PDE4D PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000113448|Q08499-11|PDE4D;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23321533203125 2 457.207835 912.401117 0.28314 0.00012945 -0.041427 -1.8941E-05 0.24171 0.00011051 457.2077614528404 35.916 0.66518 33.639 33.352 34.017 -2.2766 44 18 3 0 0 0 0.5707 1 6296 6296 24.021 8.1734 1 13129000 40807 6923;12289;2743 27193 27209 40140 40140 -0.05858713659347359 SEMASNKF 8 Unmodified _SEMASNKF_ 0 0 0 PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000113448|Q08499-11|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant;ENSG00000113448|ENST00000340635|PDE4D PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000113448|Q08499-11|PDE4D;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 457.207835 912.401117 0.26954 0.00012323 -0.14803 -6.7682E-05 0.1215 5.5552E-05 457.20772156859067 33.731 0.56526 33.731 33.474 34.039 0 0.043952 -0.00023646 NaN 71.134 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 8518100 40808 6923;12289;2743 27193 27209 -0.05858713659347359 SEMAVSELP 9 Unmodified _SEMAVSELP_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7795104980469 2 481.7286 961.442648 -0.32274 -0.00015547 -0.1632 -7.8616E-05 -0.48593 -0.00023409 481.7287226509413 110.44 0.90526 106.06 105.62 106.52 -4.3776 37 25 2 0 0 0 0.14834 1 21811 21811 48.346 18.121 1 2077200 40809 7215 27194 27210 40141 40141 -0.039615776906771316 SEMAVSELP 9 Unmodified _SEMAVSELP_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.254638671875 2 481.7286 961.442648 -0.12429 -5.9874E-05 -0.019158 -9.2289E-06 -0.14345 -6.9103E-05 481.7285612630969 110.76 1.1302 106.27 105.59 106.72 -4.4915 37 31 2 0 0 0 0.54076 1 21212 21212 26.884 15.243 1 1331900 40810 7215 27194 27210 40142 40142 -0.039615776906771316 SEMAVSELP 9 Unmodified _SEMAVSELP_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 481.7286 961.442648 0.55839 0.00026899 -1.2085 -0.00058216 -0.65009 -0.00031317 481.72849236146993 110.43 0.87899 106.2 105.53 106.41 -4.2289 0.10932 -0.00076894 NaN 48.346 38 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1026600 40811 7215 27194 27210 -0.039615776906771316 SEMDDEDC 8 Unmodified _SEMDDEDC_ 0 0 0 ENST00000548758.1_1_14:36295674-36335014:+|nuORF;ENSG00000100916|ENST00000216807|BRMS1L ENST00000548758.1_1_14:36295674-36335014:+|nuORF ENST00000548758.1_1_14:36295674-36335014:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.0928649902344 3 315.093369 942.258277 NaN NaN NaN NaN NaN NaN NaN 8.0538 1 7.3746 6.8746 7.8746 -0.67913 0 0 0 0.21486 1 797 797 0 0 1 40812 2024 27195 27211 40143 40143 -0.2151613390356033 SEMDLINKEA 10 Unmodified _SEMDLINKEA_ 0 0 0 CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant;ENSG00000124177|ENST00000373233|CHD6 CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.311279296875 2 575.276446 1148.53834 -0.0053004 -3.0492E-06 0.33643 0.00019354 0.33113 0.00019049 575.2767328462064 81.211 0.48457 77.654 77.408 77.892 -3.557 32 13 3 0 0 0 0.11758 2 15854 15854;15872 55.235 34.781 1 4541400 40813 516 27196 27212 40144;40145 40144 -0.02998849570440143 SEMDLINKEA 10 Unmodified _SEMDLINKEA_ 0 0 0 CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant;ENSG00000124177|ENST00000373233|CHD6 CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3117065429688 2 575.276446 1148.53834 0.11636 6.6941E-05 0.20786 0.00011958 0.32422 0.00018652 575.2766061816742 81.597 0.52223 77.758 77.474 77.996 -3.8392 33 14 3 0 0 0 0.61548 1 15527 15527 18.373 10.463 1 4373800 40814 516 27196 27212 40146 40146 -0.02998849570440143 SEMDLINKEA 10 Unmodified _SEMDLINKEA_ 0 0 0 CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant;ENSG00000124177|ENST00000373233|CHD6 CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 575.276446 1148.53834 0.62982 0.00036232 -0.57274 -0.00032948 0.057074 3.2833E-05 575.2760123528377 77.766 0.59097 77.766 77.496 78.087 0 0.031698 -0.00081486 NaN 55.235 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3063200 40815 516 27196 27212 -0.02998849570440143 SEMDLINKEA 10 Unmodified _SEMDLINKEA_ 0 0 0 CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant;ENSG00000124177|ENST00000373233|CHD6 CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.276446 1148.53834 -0.17369 -9.9918E-05 0.28347 0.00016308 0.10979 6.3157E-05 575.2766603964527 81.446 0.52422 77.758 77.49 78.015 -3.6879 0.024262 0.00017026 NaN 55.235 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3336500 40816 516 27196 27212 -0.02998849570440143 SEMFASEL 8 Oxidation (M) _SEM(Oxidation (M))FASEL_ SEM(1)FASEL SEM(64)FASEL 0 0 1 ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25128173828125 2 465.199676 928.384799 -0.019175 -8.92E-06 -0.11131 -5.1781E-05 -0.13048 -6.0701E-05 465.19966541180986 96.373 0.72165 92.323 91.958 92.68 -4.0496 31 20 2 0 0 0 0.17597 1 18874 18874 63.563 7.0216 1 1912400 40817 1509 27197 27213 40147 40147 10 -0.08225839616102348 SEMFASEL 8 Oxidation (M) _SEM(Oxidation (M))FASEL_ SEM(1)FASEL SEM(47)FASEL 0 0 1 ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25067138671875 2 465.199676 928.384799 0.095972 4.4646E-05 0.024398 1.135E-05 0.12037 5.5996E-05 465.1996786649152 95.661 0.43771 91.47 91.21 91.648 -4.1911 20 12 2 0 0 0 0.44415 1 18248 18248 46.921 6.4723 1 990700 40818 1509 27197 27213 40148 40148 10 -0.08225839616102348 SEMFASEL 8 Oxidation (M) _SEM(Oxidation (M))FASEL_ SEM(1)FASEL SEM(47)FASEL 0 0 1 ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2546691894531 2 465.199676 928.384799 -0.0025902 -1.205E-06 -0.20152 -9.3748E-05 -0.20411 -9.4953E-05 465.19955825209587 95.393 0.65932 91.512 91.158 91.817 -3.881 30 18 2 0 0 0 0.44415 1 18324 18324 46.921 6.4723 1 1909700 40819 1509 27197 27213 40149 40149 10 -0.08225839616102348 SEMFASEL 8 Oxidation (M) _SEM(Oxidation (M))FASEL_ SEM(1)FASEL SEM(57)FASEL 0 0 1 ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25250244140625 2 465.199676 928.384799 -0.031305 -1.4563E-05 0.00092211 4.2896E-07 -0.030383 -1.4134E-05 465.1996406652152 96.193 0.65876 92.312 92.028 92.686 -3.881 29 18 2 0 0 0 0.21444 1 18473 18473 56.541 6.8724 1 2773600 40820 1509 27197 27213 40150 40150 10 -0.08225839616102348 SEMFASEL 8 Oxidation (M) _SEM(Oxidation (M))FASEL_ 0 0 1 ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN ENSG00000075131|ENST00000261881|TIPIN MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.199676 928.384799 -0.07423 -3.4532E-05 0.1578 7.341E-05 0.083573 3.8878E-05 465.1996669436447 92.238 0.66763 92.238 91.876 92.544 0 -0.065744 0.00013375 NaN 63.563 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2243000 40821 1509 27197 27213 10 -0.08225839616102348 SEMIAKHF 8 Unmodified _SEMIAKHF_ 0 0 0 REV__nc|ENSG00000159398|Q6NT32-3|CES5A REV__nc|ENSG00000159398|Q6NT32-3|CES5A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7718200683594 2 481.741845 961.469137 NaN NaN NaN NaN NaN NaN NaN 29.188 1 27.232 26.732 27.732 -1.9561 0 0 0 0.23487 1 5244 5244 0.62683 0 1 + 40822 17369 27198 27214 40151 40151 -0.013138440086891023 SEMKLSVNA 9 Unmodified _SEMKLSVNA_ 0 0 0 ENST00000440787.5_1_3:9845376-9847896:+|nuORF;nc|ENSG00000241553|P59998-4|ARPC4;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4 ENST00000440787.5_1_3:9845376-9847896:+|nuORF ENST00000440787.5_1_3:9845376-9847896:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2651672363281 2 489.749867 977.485181 -0.13293 -6.5105E-05 -0.26448 -0.00012953 -0.39741 -0.00019463 489.7497714610226 64.799 0.76328 64.799 64.375 65.139 0 43 21 3 0 0 0 0.031786 2 12455 12455;12504 79.596 24.094 1 4627100 40823 7853 27199 27215 40152;40153 40152 -0.004461825624503035 SEMKLSVNA 9 Unmodified _SEMKLSVNA_ 0 0 0 ENST00000440787.5_1_3:9845376-9847896:+|nuORF;nc|ENSG00000241553|P59998-4|ARPC4;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4 ENST00000440787.5_1_3:9845376-9847896:+|nuORF ENST00000440787.5_1_3:9845376-9847896:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2633972167969 2 489.749867 977.485181 0.073767 3.6128E-05 -0.80934 -0.00039638 -0.73558 -0.00036025 489.74963438339853 67.67 0.72483 64.561 64.072 64.797 -3.1086 48 20 4 0 0 0 0.028327 1 13099 13099 83.429 27.926 1 3524900 40824 7853 27199 27215 40154 40154 -0.004461825624503035 SEMKLSVNA 9 Unmodified _SEMKLSVNA_ 0 0 0 ENST00000440787.5_1_3:9845376-9847896:+|nuORF;nc|ENSG00000241553|P59998-4|ARPC4;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4 ENST00000440787.5_1_3:9845376-9847896:+|nuORF ENST00000440787.5_1_3:9845376-9847896:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2701416015625 2 489.749867 977.485181 0.42265 0.00020699 -0.24752 -0.00012122 0.17513 8.5772E-05 489.74956864754535 68.11 0.70039 64.573 64.163 64.864 -3.5362 35 19 3 0 0 0 0.078741 1 12794 12794 79.596 24.094 1 4097200 40825 7853 27199 27215 40155 40155 -0.004461825624503035 SEMKLSVNA 9 Unmodified _SEMKLSVNA_ 0 0 0 ENST00000440787.5_1_3:9845376-9847896:+|nuORF;nc|ENSG00000241553|P59998-4|ARPC4;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4 ENST00000440787.5_1_3:9845376-9847896:+|nuORF ENST00000440787.5_1_3:9845376-9847896:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2664794921875 2 489.749867 977.485181 0.0812 3.9768E-05 -0.65826 -0.00032238 -0.57705 -0.00028261 489.74938976346505 67.957 0.97258 64.63 64.205 65.178 -3.3268 53 27 3 0 0 0 0.054822 1 12824 12824 86.332 22.371 1 3407200 40826 7853 27199 27215 40156 40156 -0.004461825624503035 SEMKPQPV 8 Unmodified _SEMKPQPV_ 0 0 0 REV__nc|ENSG00000148840|Q5VV67-2|PPRC1 REV__nc|ENSG00000148840|Q5VV67-2|PPRC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2330322265625 2 458.233853 914.453153 0.17347 7.949E-05 0.040647 1.8626E-05 0.21412 9.8116E-05 458.2338217275392 38.377 1.5968 35.972 35.364 36.961 -2.4049 86 45 2 0 0 0 8448 1 6713 6713 3.2813 0.65007 1 2540500 + 40827 16990 27200 27216 40157 40157 -0.007495502455867609 SEMLCSYF 8 Unmodified _SEMLCSYF_ 0 0 0 ENST00000591360.1_1_18:56204962-56205301:+|nuORF ENST00000591360.1_1_18:56204962-56205301:+|nuORF ENST00000591360.1_1_18:56204962-56205301:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2606506347656 2 490.198622 978.38269 NaN NaN NaN NaN NaN NaN NaN 122.76 1 118.17 117.67 118.67 -4.5926 0 0 0 0.21486 1 23631 23631 10.183 3.8293 1 40828 11621 27201 27217 40158 40158 -0.10736591625561687 SEMLVIQH 8 Unmodified _SEMLVIQH_ 0 0 0 ENST00000536066.1_1_12:2967806-2973707:-|nuORF;FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1 ENST00000536066.1_1_12:2967806-2973707:-|nuORF ENST00000536066.1_1_12:2967806-2973707:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72491455078125 2 478.747127 955.479702 -0.11293 -5.4066E-05 0.45164 0.00021622 0.33871 0.00016216 478.74733227624426 72.465 0.72671 72.465 72.089 72.816 0 35 20 2 0 0 0 0.37918 1 14069 14069 53.576 23.351 1 4847900 40829 2608 27202 27218 40159 40159 0.0001813864572568491 SEMLVIQH 8 Unmodified _SEMLVIQH_ 0 0 0 ENST00000536066.1_1_12:2967806-2973707:-|nuORF;FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1 ENST00000536066.1_1_12:2967806-2973707:-|nuORF ENST00000536066.1_1_12:2967806-2973707:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.723388671875 2 478.747127 955.479702 0.20022 9.5856E-05 0.33561 0.00016067 0.53583 0.00025653 478.7472397969102 76.189 0.78228 72.556 72.001 72.783 -3.6337 43 22 3 0 0 0 0.077908 1 14439 14439 81.864 34.943 1 5830700 40830 2608 27202 27218 40160 40160 0.0001813864572568491 SEMLVKKL 8 Unmodified _SEMLVKKL_ 0 0 0 ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000174996|Q9H0B6-2|KLC2 ENSG00000174996|ENST00000394067|KLC2 ENSG00000174996|ENST00000394067|KLC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.189697265625 3 316.524656 946.552139 -0.25358 -8.0265E-05 0.19627 6.2125E-05 -0.05731 -1.814E-05 316.52468308833505 61.231 0.58084 58.287 57.949 58.53 -2.9446 29 16 3 0 0 0 0.87967 1 11831 11831 11.999 9.3561 1 2218200 40831 6380 27203 27219 40161 40161 0.07672472719298185 SEMLVKKL 8 Unmodified _SEMLVKKL_ 0 0 0 ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000174996|Q9H0B6-2|KLC2 ENSG00000174996|ENST00000394067|KLC2 ENSG00000174996|ENST00000394067|KLC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 316.524656 946.552139 -0.78357 -0.00024802 0.87623 0.00027735 0.09266 2.9329E-05 316.5248965510319 58.682 0.45725 58.682 58.442 58.9 0 0.31478 0.00055501 NaN 11.999 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1511100 40832 6380 27203 27219 0.07672472719298185 SEMLVKKL 8 Unmodified _SEMLVKKL_ 0 0 0 ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000174996|Q9H0B6-2|KLC2 ENSG00000174996|ENST00000394067|KLC2 ENSG00000174996|ENST00000394067|KLC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 316.524656 946.552139 0.11369 3.5987E-05 -0.279 -8.8309E-05 -0.1653 -5.2323E-05 316.52455164386265 61.64 0.56584 58.27 58.002 58.568 -3.3694 -0.097013 -0.00054196 NaN 11.999 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1889900 40833 6380 27203 27219 0.07672472719298185 SEMLVKKL 8 Unmodified _SEMLVKKL_ 0 0 0 ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000174996|Q9H0B6-2|KLC2 ENSG00000174996|ENST00000394067|KLC2 ENSG00000174996|ENST00000394067|KLC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 316.524656 946.552139 -0.49685 -0.00015726 1.1974 0.00037901 0.70055 0.00022174 316.52477933718336 61.47 0.52154 58.231 57.962 58.484 -3.2395 -0.13694 0.00085999 NaN 11.999 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1639000 40834 6380 27203 27219 0.07672472719298185 SEMQLRWH 8 Unmodified _SEMQLRWH_ 0 0 0 ENSG00000047644|ENST00000380861|WWC3 ENSG00000047644|ENST00000380861|WWC3 ENSG00000047644|ENST00000380861|WWC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.771728515625 2 543.761101 1085.50765 0.54923 0.00029865 -0.031409 -1.7079E-05 0.51782 0.00028157 543.7610033381837 122.19 0.47963 117.51 117.34 117.82 -4.6873 18 13 2 0 0 0 1.0011 1 23497 23497 7.9102 0 1 1047200 40835 1221 27204 27220 40162 40162 -0.03168538374188756 SEMQLVKQ 8 Unmodified _SEMQLVKQ_ 0 0 0 REV__TCF20|p.P1561Lfs*54|1|0.31|ENSG00000100207|chr22:42210624-42210624|G/-|frameshift_variant REV__TCF20|p.P1561Lfs*54|1|0.31|ENSG00000100207|chr22:42210624-42210624|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76556396484375 2 481.75241 961.490267 NaN NaN NaN NaN NaN NaN NaN 57.774 1 54.522 54.022 55.022 -3.2517 0 0 0 0.16002 1 10730 10730 36.044 0 1 + 40836 24778 27205 27221 40163 40163 0.007981213001698961 SEMRAPPAA 9 Unmodified _SEMRAPPAA_ 0 0 0 ENST00000531368.1_1_17:42286674-42287095:-|nuORF;nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF ENST00000531368.1_1_17:42286674-42287095:-|nuORF ENST00000531368.1_1_17:42286674-42287095:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2369079589844 2 465.229102 928.443651 0.1763 8.2022E-05 -0.56861 -0.00026453 -0.3923 -0.00018251 465.2288462780429 28.075 3.1198 28.075 27.01 30.13 0 229 89 3 0 0 0 0.039785 2 5131 5131;5374 75.761 29.74 1 18144000 40837 2465 27206 27222 40164;40165 40164 -0.023433185311318994 SEMRAPPAA 9 Unmodified _SEMRAPPAA_ 0 0 0 ENST00000531368.1_1_17:42286674-42287095:-|nuORF;nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF ENST00000531368.1_1_17:42286674-42287095:-|nuORF ENST00000531368.1_1_17:42286674-42287095:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2576599121094 2 465.229102 928.443651 0.42629 0.00019832 -0.86473 -0.0004023 -0.43844 -0.00020398 465.2287087278354 30.287 3.6587 28.17 26.854 30.513 -2.1167 248 103 3 0 0 0 0.15274 5 5873 5683;5860;5863;5873;5929 43.772 25.637 1 15726000 40838 2465 27206 27222 40166;40167;40168;40169;40170 40169 -0.023433185311318994 SEMRAPPAA 9 Unmodified _SEMRAPPAA_ 0 0 0 ENST00000531368.1_1_17:42286674-42287095:-|nuORF;nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF ENST00000531368.1_1_17:42286674-42287095:-|nuORF ENST00000531368.1_1_17:42286674-42287095:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2372741699219 2 465.229102 928.443651 0.29244 0.00013605 -0.70189 -0.00032654 -0.40945 -0.00019049 465.2288106215707 29.943 3.4376 28.05 26.912 30.35 -1.8928 268 97 4 0 0 0 0.02633 5 5158 4929;4964;5158;5363;5404 85.642 43.802 1 18201000 40839 2465 27206 27222 40171;40172;40173;40174;40175 40173 -0.023433185311318994 SEMRAPPAA 9 Unmodified _SEMRAPPAA_ 0 0 0 ENST00000531368.1_1_17:42286674-42287095:-|nuORF;nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF ENST00000531368.1_1_17:42286674-42287095:-|nuORF ENST00000531368.1_1_17:42286674-42287095:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23809814453125 2 465.229102 928.443651 NaN NaN NaN NaN NaN NaN NaN 32.349 1 30.322 29.822 30.822 -2.0264 0 0 0 0.1543 1 5610 5610 29.841 11.706 1 40840 2465 27206 27222 40176 40176 -0.023433185311318994 SEMRAPPAA 9 Unmodified _SEMRAPPAA_ 0 0 0 ENST00000531368.1_1_17:42286674-42287095:-|nuORF;nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF ENST00000531368.1_1_17:42286674-42287095:-|nuORF ENST00000531368.1_1_17:42286674-42287095:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2583312988281 2 465.229102 928.443651 0.52787 0.00024558 -1.0627 -0.0004944 -0.53482 -0.00024881 465.22864447627643 30.031 3.5999 27.957 26.893 30.493 -2.0743 269 102 4 0 0 0 0.02633 6 5296 4975;5272;5275;5296;5533;5607 85.642 35.709 1 14243000 40841 2465 27206 27222 40177;40178;40179;40180;40181;40182 40180 -0.023433185311318994 SEMTGYVV 8 Unmodified _SEMTGYVV_ 0 0 0 ENST00000488504.5_1_22:50691832-50695243:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF;ENST00000496942.5_1_22:50694331-50695243:-|nuORF ENST00000488504.5_1_22:50691832-50695243:-|nuORF ENST00000488504.5_1_22:50691832-50695243:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 885.40283203125 1 885.402246 884.394969 0.26598 0.0002355 -0.14531 -0.00012866 0.12067 0.00010684 885.401963925171 93.439 0.37947 89.448 89.209 89.588 -3.9907 14 10 2 0 0 0 0.039878 1 18274 18274 101.72 27.326 1 1517700 40842 7152 27207 27223 40183 40183 -0.051852318908800044 SEMTGYVV 8 Unmodified _SEMTGYVV_ 0 0 0 ENST00000488504.5_1_22:50691832-50695243:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF;ENST00000496942.5_1_22:50694331-50695243:-|nuORF ENST00000488504.5_1_22:50691832-50695243:-|nuORF ENST00000488504.5_1_22:50691832-50695243:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 885.4030151367188 1 885.402246 884.394969 0.45593 0.00040368 0.084817 7.5097E-05 0.54074 0.00047878 885.4023229496579 93.621 0.53993 89.478 89.18 89.72 -4.1435 20 15 2 0 0 0 0.039682 3 17864 17812;17815;17864 89.427 25.864 1 1765000 40843 7152 27207 27223 40184;40185;40186 40186 -0.051852318908800044 SEMTGYVV 8 Unmodified _SEMTGYVV_ 0 0 0 ENST00000488504.5_1_22:50691832-50695243:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF;ENST00000496942.5_1_22:50694331-50695243:-|nuORF ENST00000488504.5_1_22:50691832-50695243:-|nuORF ENST00000488504.5_1_22:50691832-50695243:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 885.4027099609375 1 885.402246 884.394969 0.21852 0.00019348 0.18907 0.0001674 0.40759 0.00036088 885.4019372886664 93.276 0.41679 89.432 89.225 89.642 -3.844 16 11 2 0 0 0 0.036929 3 17906 17857;17859;17906 93.883 19.487 1 1568900 40844 7152 27207 27223 40187;40188;40189 40189 -0.051852318908800044 SEMWDVFCY 9 Unmodified _SEMWDVFCY_ 0 0 0 STAB2|p.P2450Lfs*4|1|0.51|ENSG00000136011|chr12:103761396-103761396|C/-|frameshift_variant;ENSG00000136011|ENST00000388887|STAB2 STAB2|p.P2450Lfs*4|1|0.51|ENSG00000136011|chr12:103761396-103761396|C/-|frameshift_variant STAB2|p.P2450Lfs*4|1|0.51|ENSG00000136011|chr12:103761396-103761396|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2716064453125 2 590.22791 1178.44127 NaN NaN NaN NaN NaN NaN NaN 135.72 1 130.88 130.38 131.38 -4.8307 0 0 0 0.23508 1 26131 26131 7.9102 1.187 1 40845 3976 27208 27224 40190 40190 -0.14081535051082028 SENDELVL 8 Unmodified _SENDELVL_ 0 0 0 REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.22650146484375 2 459.724372 917.434192 0.25235 0.00011601 0.031036 1.4268E-05 0.28339 0.00013028 459.7243441341287 85.27 0.73872 85.27 85.049 85.788 0 33 20 2 0 0 0 0.52597 1 16693 16693 26.884 3.7352 1 2453200 + 40846 17101 27209 27225 40191 40191 -0.027828083356666866 SENDELVL 8 Unmodified _SENDELVL_ 0 0 0 REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant REV__EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2264404296875 2 459.724372 917.434192 -0.17742 -8.1566E-05 0.38681 0.00017783 0.20939 9.6261E-05 459.7244556018496 89.158 0.66249 85.366 85.057 85.719 -3.7926 30 18 2 0 0 0 0.19607 1 17447 17447 46.021 6.0636 1 1719300 + 40847 17101 27209 27225 40192 40192 -0.027828083356666866 SENEEESP 8 Unmodified _SENEEESP_ 0 0 0 ENSG00000102870|ENST00000262525|ZNF629;ZNF629|p.P77Qfs*23|1|0.59|ENSG00000102870|chr16:30784098-30784098|G/-|frameshift_variant ENSG00000102870|ENST00000262525|ZNF629 ENSG00000102870|ENST00000262525|ZNF629 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2471008300781 2 460.677619 919.340685 0.15918 7.3332E-05 3.2656 0.0015044 3.4248 0.0015777 460.6811181960579 18.497 0.80018 18.497 18.126 18.926 0 70 22 4 0 0 0 0.95515 1 2983 2983 15.847 0 1 5512700 40848 2146 27210 27226 40193 40193 -0.12221152508743671 SENEEFVEV 9 Unmodified _SENEEFVEV_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2839965820312 2 541.237844 1080.46113 0.39717 0.00021496 -0.22541 -0.000122 0.17176 9.2963E-05 541.2377021082161 97.847 0.85799 97.847 97.437 98.295 0 60 24 3 0 0 0 0.12517 1 19246 19246 60.074 39.62 1 13112000 40849 2505 27211 27227 40194 40194 -0.07587744515149097 SENEEFVEV 9 Unmodified _SENEEFVEV_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2752075195312 2 541.237844 1080.46113 0.37816 0.00020468 -0.14331 -7.7564E-05 0.23485 0.00012711 541.2377078932941 102.25 0.8231 97.926 97.573 98.396 -4.3208 74 23 4 0 0 0 0.17396 1 19661 19661 51.63 26.23 1 17255000 40850 2505 27211 27227 40195 40195 -0.07587744515149097 SENEEFVEV 9 Unmodified _SENEEFVEV_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2650756835938 2 541.237844 1080.46113 0.5636 0.00030504 -0.19728 -0.00010677 0.36632 0.00019827 541.237671464555 102.01 0.95986 97.992 97.528 98.488 -4.0212 82 27 5 0 0 0 0.00017431 5 19572 19572;19580;19613;19668;19688 147.06 69.061 1 13907000 40851 2505 27211 27227 40196;40197;40198;40199;40200 40196 -0.07587744515149097 SENEEFVEV 9 Unmodified _SENEEFVEV_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.237844 1080.46113 0.21167 0.00011456 0.041301 2.2354E-05 0.25297 0.00013692 541.2378198156064 102.14 0.86557 97.955 97.511 98.377 -4.1861 0.025101 0.00019512 NaN 134.3 70 24 4 NaN NaN NaN NaN 0 NaN NaN 0 20465000 40852 2505 27211 27227 -0.07587744515149097 SENEEKEEE 9 Unmodified _SENEEKEEE_ 0 0 0 REV__nc|ENSG00000144061|O15259-3|NPHP1 REV__nc|ENSG00000144061|O15259-3|NPHP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2196960449219 3 374.819291 1121.43604 0.12136 4.5489E-05 1.0967 0.00041105 1.218 0.00045654 374.81967722086046 61.884 0.73677 58.514 58.185 58.922 -3.3694 48 20 3 0 0 0 0.29284 1 11541 11541 32.037 8.2364 1 7929000 + 40853 16769 27212 27228 40201 40201 -0.11981844108368023 SENEEKEEE 9 Unmodified _SENEEKEEE_ 0 0 0 REV__nc|ENSG00000144061|O15259-3|NPHP1 REV__nc|ENSG00000144061|O15259-3|NPHP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2196960449219 3 374.819291 1121.43604 0.12136 4.5489E-05 1.0967 0.00041105 1.218 0.00045654 374.81967722086046 61.884 0.73677 58.514 58.185 58.922 -3.3694 48 20 3 0 0 0 0.65397 1 11541 11541 32.037 8.2364 1 7929000 + 40854 16769 27212 27228 40202 40202 -0.11981844108368023 SENEELPKP 9 Unmodified _SENEELPKP_ 0 0 0 IWS1|p.D262N|1|0.33|ENSG00000163166|chr2:127505119-127505119|C/T|missense_variant;nc|ENSG00000163166|Q96ST2-3|IWS1;IWS1|p.S802Afs*7|2|0.29|ENSG00000163166|chr2:127481100-127481100|T/-|frameshift_variant;ENSG00000163166|ENST00000295321|IWS1 IWS1|p.D262N|1|0.33|ENSG00000163166|chr2:127505119-127505119|C/T|missense_variant IWS1|p.D262N|1|0.33|ENSG00000163166|chr2:127505119-127505119|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2578735351562 2 521.756204 1041.49785 0.54507 0.00028439 -0.70925 -0.00037005 -0.16418 -8.5663E-05 521.7558204841423 47.805 1.4403 47.805 46.873 48.313 0 54 40 2 0 0 0 0.61228 2 9051 9051;9101 12.241 3.4953 1 1285900 40855 5408 27213 27229 40203;40204 40203 -0.021234478985661553 SENEELPKP 9 Unmodified _SENEELPKP_ 0 0 0 IWS1|p.D262N|1|0.33|ENSG00000163166|chr2:127505119-127505119|C/T|missense_variant;nc|ENSG00000163166|Q96ST2-3|IWS1;IWS1|p.S802Afs*7|2|0.29|ENSG00000163166|chr2:127481100-127481100|T/-|frameshift_variant;ENSG00000163166|ENST00000295321|IWS1 IWS1|p.D262N|1|0.33|ENSG00000163166|chr2:127505119-127505119|C/T|missense_variant IWS1|p.D262N|1|0.33|ENSG00000163166|chr2:127505119-127505119|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2572631835938 2 521.756204 1041.49785 -0.3754 -0.00019587 0.22198 0.00011582 -0.15342 -8.0049E-05 521.7562703068809 50.834 1.8014 47.952 46.761 48.563 -2.8824 72 50 2 0 0 0 0.21532 3 9638 9589;9638;9705 36.506 16.092 1 1396900 40856 5408 27213 27229 40205;40206;40207 40206 -0.021234478985661553 SENEELPKP 9 Unmodified _SENEELPKP_ 0 0 0 IWS1|p.D262N|1|0.33|ENSG00000163166|chr2:127505119-127505119|C/T|missense_variant;nc|ENSG00000163166|Q96ST2-3|IWS1;IWS1|p.S802Afs*7|2|0.29|ENSG00000163166|chr2:127481100-127481100|T/-|frameshift_variant;ENSG00000163166|ENST00000295321|IWS1 IWS1|p.D262N|1|0.33|ENSG00000163166|chr2:127505119-127505119|C/T|missense_variant IWS1|p.D262N|1|0.33|ENSG00000163166|chr2:127505119-127505119|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2575073242188 2 521.756204 1041.49785 -0.68587 -0.00035786 0.35759 0.00018658 -0.32828 -0.00017128 521.7564514697913 50.795 1.4114 47.749 46.992 48.403 -3.0453 70 40 2 0 0 0 0.39189 2 9339 9339;9389 26.268 10.119 1 1665800 40857 5408 27213 27229 40208;40209 40208 -0.021234478985661553 SENEELPKP 9 Unmodified _SENEELPKP_ 0 0 0 IWS1|p.D262N|1|0.33|ENSG00000163166|chr2:127505119-127505119|C/T|missense_variant;nc|ENSG00000163166|Q96ST2-3|IWS1;IWS1|p.S802Afs*7|2|0.29|ENSG00000163166|chr2:127481100-127481100|T/-|frameshift_variant;ENSG00000163166|ENST00000295321|IWS1 IWS1|p.D262N|1|0.33|ENSG00000163166|chr2:127505119-127505119|C/T|missense_variant IWS1|p.D262N|1|0.33|ENSG00000163166|chr2:127505119-127505119|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2574462890625 2 521.756204 1041.49785 -0.014834 -7.7399E-06 -0.35227 -0.0001838 -0.3671 -0.00019154 521.7560808321588 50.782 1.5546 47.731 46.862 48.417 -3.0517 70 44 2 0 0 0 0.43219 2 9402 9345;9402 23.79 8.1739 1 1695500 40858 5408 27213 27229 40210;40211 40211 -0.021234478985661553 SENEKGKK 8 Unmodified _SENEKGKK_ 0 0 0 MAGI3|p.R1443Hfs*9|1|0.06|ENSG00000081026|chr1:113683894-113683895|-/CATTTTCTCCTATTTTATCGTTACT|frameshift_variant;MAGI3|p.V1452Sfs*2|1|0.05|ENSG00000081026|chr1:113683920-113683921|-/T|frameshift_variant;MAGI3|p.V1452Ffs*4|1|0.05|ENSG00000081026|chr1:113683921-113683922|-/TTTTATC|frameshift_variant;ENSG00000081026|ENST00000307546|MAGI3;nc|ENSG00000081026|Q5TCQ9-1|MAGI3 MAGI3|p.R1443Hfs*9|1|0.06|ENSG00000081026|chr1:113683894-113683895|-/CATTTTCTCCTATTTTATCGTTACT|frameshift_variant MAGI3|p.R1443Hfs*9|1|0.06|ENSG00000081026|chr1:113683894-113683895|-/CATTTTCTCCTATTTTATCGTTACT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2460021972656 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 177.52 1 172.61 172.11 173.11 -4.9088 0 0 0 0.21486 1 35403 35403 2.0598 0 1 40859 1624 27214 27230 40212 40212 0.014560065124328503 SENEKKWFIQ 10 Unmodified _SENEKKWFIQ_ 0 0 0 REV__nc|ENSG00000129116|Q8WX93-7|PALLD REV__nc|ENSG00000129116|Q8WX93-7|PALLD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2206726074219 3 436.890944 1307.651 NaN NaN NaN NaN NaN NaN NaN 17.459 1 16.148 15.648 16.648 -1.3109 0 0 0 0.22588 1 2796 2796 1.9064 0.57673 1 + 40860 15948 27215 27231 40213 40213 0.009481672178935696 SENEKKWFIQP 11 Unmodified _SENEKKWFIQP_ 0 0 0 REV__nc|ENSG00000129116|Q8WX93-7|PALLD REV__nc|ENSG00000129116|Q8WX93-7|PALLD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 468.7807312011719 3 469.241865 1404.70376 NaN NaN NaN NaN NaN NaN NaN 102.47 1 98.282 97.782 98.782 -4.1861 0 0 0 0.22632 1 20140 20140 1.4551 0 1 + 40861 15948 27216 27232 40214 40214 0.017601252807025958 SENELKKAY 9 Unmodified _SENELKKAY_ 0 0 0 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2799072265625 2 541.279846 1080.54514 0.32329 0.00017499 -0.33648 -0.00018213 -0.01319 -7.1393E-06 541.2796347869247 22.928 0.41629 22.928 22.679 23.096 0 32 11 4 0 0 0 0.040189 2 3871 3871;3920 75.571 37.395 1 5633300 40862 1417 27217 27233 40215;40216 40215 0.008088313724329055 SENELKKAY 9 Unmodified _SENELKKAY_ 0 0 0 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2798461914062 2 541.279846 1080.54514 0.076865 4.1606E-05 -0.13965 -7.559E-05 -0.062785 -3.3984E-05 541.279712532924 24.409 0.72303 22.875 22.644 23.367 -1.5342 48 20 4 0 0 0 0.00012336 2 3990 3945;3990 125.04 45.441 1 5705900 40863 1417 27217 27233 40217;40218 40218 0.008088313724329055 SENELKKAY 9 Unmodified _SENELKKAY_ 0 0 0 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2799072265625 2 541.279846 1080.54514 -0.14728 -7.9718E-05 0.17418 9.4282E-05 0.026906 1.4564E-05 541.2799241179563 24.682 0.65038 22.828 22.606 23.256 -1.8534 35 18 2 0 0 0 0.010315 1 4005 4005 103.82 58.084 1 5480900 40864 1417 27217 27233 40219 40219 0.008088313724329055 SENELKKAY 9 Unmodified _SENELKKAY_ 0 0 0 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.279846 1080.54514 1.2759 0.00069061 -1.0503 -0.00056853 0.22555 0.00012209 541.2789138361668 24.927 0.27611 23.279 23.095 23.371 -1.6482 0.30123 -0.000974 NaN 125.04 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 460370 40865 1417 27217 27233 0.008088313724329055 SENEYIMKA 9 Unmodified _SENEYIMKA_ 0 0 0 nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L nc|ENSG00000124207|P55060-4|CSE1L nc|ENSG00000124207|P55060-4|CSE1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7947387695312 2 542.752607 1083.49066 0.037728 2.0477E-05 0.084844 4.6049E-05 0.12257 6.6526E-05 542.7527974970468 58.496 1.181 58.496 58.032 59.213 0 124 33 6 0 0 0 0.0048421 1 11183 11183 114.2 66.453 1 332340000 40866 3301 27218 27234 40220 40220 -0.04774503770636329 SENEYIMKA 9 Unmodified _SENEYIMKA_ 0 0 0 nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L nc|ENSG00000124207|P55060-4|CSE1L nc|ENSG00000124207|P55060-4|CSE1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7941284179688 2 542.752607 1083.49066 0.26238 0.00014241 -0.29192 -0.00015844 -0.029546 -1.6036E-05 542.7526360583996 61.473 1.5005 58.512 58.105 59.606 -2.9614 140 42 6 0 0 0 0.0048421 2 11851 11778;11851 114.2 66.453 1 385060000 40867 3301 27218 27234 40221;40222 40222 -0.04774503770636329 SENEYIMKA 9 Unmodified _SENEYIMKA_ 0 0 0 nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L nc|ENSG00000124207|P55060-4|CSE1L nc|ENSG00000124207|P55060-4|CSE1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.791748046875 2 542.752607 1083.49066 0.13487 7.3202E-05 -0.15594 -8.4636E-05 -0.021065 -1.1433E-05 542.7527344726809 61.884 1.6529 58.514 58.002 59.655 -3.3694 154 46 6 0 0 0 0.0048421 1 11505 11505 114.2 66.453 1 368000000 40868 3301 27218 27234 40223 40223 -0.04774503770636329 SENGALPVV 9 Unmodified _SENGALPVV_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 885.417236328125 1 885.467623 884.460347 0.4944 0.00043777 0.12746 0.00011286 0.62186 0.00055063 885.4676131372511 100.08 0.94759 95.78 95.242 96.189 -4.297 58 27 3 0 0 0 0.00010227 1 19180 19180 126.57 48.582 1 10691000 40869 6137 27219 27235 40224 40224 0.013495056264787308 SENGALPVV 9 Unmodified _SENGALPVV_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 885.467623 884.460347 0.40332 0.00035713 0.048424 4.2878E-05 0.45174 0.0004 885.467580631841 95.818 0.90069 95.818 95.35 96.251 0 0.063025 -8.9052E-05 NaN 126.57 52 25 3 NaN NaN NaN NaN 0 NaN NaN 0 11288000 40870 6137 27219 27235 0.013495056264787308 SENGALPVV 9 Unmodified _SENGALPVV_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 885.467623 884.460347 0.29353 0.00025991 0.31016 0.00027464 0.60369 0.00053455 885.4678404026728 99.781 0.87469 95.649 95.199 96.073 -4.1326 -0.1067 0.00014271 NaN 126.57 57 24 3 NaN NaN NaN NaN 0 NaN NaN 0 11436000 40871 6137 27219 27235 0.013495056264787308 SENGALPVV 9 Unmodified _SENGALPVV_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 885.467623 884.460347 0.40241 0.00035632 0.16592 0.00014692 0.56833 0.00050324 885.4676660296471 99.731 1.0707 95.774 95.172 96.243 -3.9564 0.018859 1.4988E-05 NaN 126.57 63 30 3 NaN NaN NaN NaN 0 NaN NaN 0 12700000 40872 6137 27219 27235 0.013495056264787308 SENGNLVVS 9 Unmodified _SENGNLVVS_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23101806640625 2 459.729989 917.445425 -0.14289 -6.5693E-05 -0.11822 -5.4348E-05 -0.26111 -0.00012004 459.7299370408373 47.294 0.45256 44.425 44.182 44.635 -2.869 26 12 3 0 0 0 0.15214 1 8928 8928 43.858 18.459 1 1468300 40873 6002 27220 27236 40225 40225 -0.01659986241520528 SENGNLVVS 9 Unmodified _SENGNLVVS_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2314453125 2 459.729989 917.445425 -0.046224 -2.1251E-05 0.086662 3.9841E-05 0.040438 1.8591E-05 459.73000333135286 47.44 0.55165 44.498 44.134 44.686 -2.9421 26 15 2 0 0 0 0.11032 2 8645 8596;8645 52.268 28.248 1 1315600 40874 6002 27220 27236 40226;40227 40227 -0.01659986241520528 SENGNLVVS 9 Unmodified _SENGNLVVS_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2313537597656 2 459.729989 917.445425 -0.094612 -4.3496E-05 0.030352 1.3954E-05 -0.06426 -2.9542E-05 459.7301372444913 47.439 0.58894 44.49 44.154 44.743 -2.9499 27 16 3 0 0 0 0.11032 1 8663 8663 52.268 26.869 1 943780 40875 6002 27220 27236 40228 40228 -0.01659986241520528 SENIFNRY 8 Unmodified _SENIFNRY_ 0 0 0 ENST00000580283.1_1_18:9594966-9614260:-|nuORF;ENST00000577779.1_1_18:9594966-9614482:-|nuORF ENST00000580283.1_1_18:9594966-9614260:-|nuORF ENST00000580283.1_1_18:9594966-9614260:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2754516601562 2 521.751256 1041.48796 -0.66816 -0.00034861 -1.3003 -0.00067844 -1.9685 -0.0010271 521.7507912478729 136.07 0.10284 131.17 131.11 131.21 -4.8951 4 2 2 0 0 0 0.71273 1 26137 26137 12.532 3.1841 1 926650 40876 11494 27221 27237 40229 40229 -0.03112591113290364 SENIKVWAP 9 Unmodified _SENIKVWAP_ 0 0 0 ENSG00000169981|ENST00000396056|ZNF35 ENSG00000169981|ENST00000396056|ZNF35 ENSG00000169981|ENST00000396056|ZNF35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2797241210938 2 522.279649 1042.54475 0.5721 0.00029879 -0.33851 -0.0001768 0.23358 0.000122 522.2793804134463 103.16 0.68404 103.16 102.73 103.41 0 37 19 3 0 0 0 0.34411 1 20249 20249 29.082 7.3349 1 2121900 40877 6026 27222 27238 40230 40230 0.025174564432290936 SENIKVWAP 9 Unmodified _SENIKVWAP_ 0 0 0 ENSG00000169981|ENST00000396056|ZNF35 ENSG00000169981|ENST00000396056|ZNF35 ENSG00000169981|ENST00000396056|ZNF35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.279541015625 2 522.279649 1042.54475 -0.65796 -0.00034364 0.70625 0.00036886 0.048288 2.522E-05 522.2799642788542 107.4 0.90791 103.08 102.54 103.45 -4.32 43 25 2 0 0 0 0.10699 2 21111 21111;21164 53.404 29.383 1 3050500 40878 6026 27222 27238 40231;40232 40231 0.025174564432290936 SENIKVWAP 9 Unmodified _SENIKVWAP_ 0 0 0 ENSG00000169981|ENST00000396056|ZNF35 ENSG00000169981|ENST00000396056|ZNF35 ENSG00000169981|ENST00000396056|ZNF35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2791137695312 2 522.279649 1042.54475 -0.73404 -0.00038338 0.71962 0.00037584 -0.014424 -7.5332E-06 522.280109348471 107.4 0.79003 102.99 102.58 103.37 -4.4121 52 22 3 0 0 0 0.051332 3 20585 20543;20585;20634 70.332 38.027 1 3607100 40879 6026 27222 27238 40233;40234;40235 40234 0.025174564432290936 SENIKVWAP 9 Unmodified _SENIKVWAP_ 0 0 0 ENSG00000169981|ENST00000396056|ZNF35 ENSG00000169981|ENST00000396056|ZNF35 ENSG00000169981|ENST00000396056|ZNF35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27978515625 2 522.279649 1042.54475 0.75861 0.00039621 -0.65103 -0.00034002 0.10758 5.6188E-05 522.2793145389278 107.06 0.72032 102.93 102.6 103.32 -4.135 38 20 2 0 0 0 0.080883 4 20589 20547;20579;20589;20634 61.602 31.657 1 2667600 40880 6026 27222 27238 40236;40237;40238;40239 40238 0.025174564432290936 SENIRITF 8 Unmodified _SENIRITF_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640075683594 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 50.483 1 47.437 46.937 47.937 -3.0453 0 0 0 0.048724 1 9252 9252 53.576 15.424 1 40881 5053;26536 27223 27239 40240 40240 0.023328834091216777 SENIRITF 8 Unmodified _SENIRITF_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2677307128906 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 50.931 1 47.886 47.386 48.386 -3.0453 0 0 0 0.18898 1 9341 9341 28.487 5.3384 1 40882 5053;26536 27223 27239 40241 40241 0.023328834091216777 SENISLKE 8 Unmodified _SENISLKE_ 0 0 0 REV__nc|ENSG00000211710|A0A577|TRBV4-1 REV__nc|ENSG00000211710|A0A577|TRBV4-1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23956298828125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 75.002 1 71.638 71.138 72.138 -3.3643 0 0 0 0.21039 1 14638 14638 16.942 1.0951 1 + 40883 24252 27224 27240 40242 40242 0.0033318441828669165 SENKFLKYL 9 Unmodified _SENKFLKYL_ 0 0 0 MTPAP|p.L388Sfs*12|1|0.41|ENSG00000107951|chr10:30322449-30322449|A/-|frameshift_variant;MTPAP|p.G449Wfs*7|1|0.49|ENSG00000107951|chr10:30316004-30316005|-/A|frameshift_variant;ENSG00000107951|ENST00000263063|MTPAP;nc|ENSG00000107951|Q9NVV4-2|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF MTPAP|p.L388Sfs*12|1|0.41|ENSG00000107951|chr10:30322449-30322449|A/-|frameshift_variant MTPAP|p.L388Sfs*12|1|0.41|ENSG00000107951|chr10:30322449-30322449|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.213134765625 3 381.213246 1140.61791 -0.0095666 -3.6469E-06 0.037711 1.4376E-05 0.028144 1.0729E-05 381.21322881113093 78.305 0.70351 74.538 74.283 74.987 -3.7664 49 19 3 0 0 0 0.64382 1 14924 14924 6.6304 2.1015 1 9104200 40884 2450 27225 27241 40243 40243 0.053225851658453394 SENKFLKYL 9 Unmodified _SENKFLKYL_ 0 0 0 MTPAP|p.L388Sfs*12|1|0.41|ENSG00000107951|chr10:30322449-30322449|A/-|frameshift_variant;MTPAP|p.G449Wfs*7|1|0.49|ENSG00000107951|chr10:30316004-30316005|-/A|frameshift_variant;ENSG00000107951|ENST00000263063|MTPAP;nc|ENSG00000107951|Q9NVV4-2|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF MTPAP|p.L388Sfs*12|1|0.41|ENSG00000107951|chr10:30322449-30322449|A/-|frameshift_variant MTPAP|p.L388Sfs*12|1|0.41|ENSG00000107951|chr10:30322449-30322449|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2127685546875 3 381.213246 1140.61791 -0.65441 -0.00024947 0.72929 0.00027801 0.074872 2.8542E-05 381.2134716859389 78.215 0.84703 74.556 74.165 75.012 -3.6588 62 23 4 0 0 0 0.52396 1 14845 14845 12.873 2.722 1 10638000 40885 2450 27225 27241 40244 40244 0.053225851658453394 SENKVIEP 8 Unmodified _SENKVIEP_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC;ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.7766418457031 2 458.242732 914.470912 0.54107 0.00024794 -0.16533 -7.5762E-05 0.37574 0.00017218 458.2426248242289 30.327 1.7832 28.252 27.556 29.339 -2.0743 150 50 5 0 0 0 8448 1 5311 5311 6.3914 5.875 1 61841000 40886 4150 27226 27242 40245 40245 0.010254882809022092 SENNIQTIF 9 Unmodified _SENNIQTIF_ 0 0 0 nc|ENSG00000150093|P05556-2|ITGB1;ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1 nc|ENSG00000150093|P05556-2|ITGB1 nc|ENSG00000150093|P05556-2|ITGB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2770385742188 2 533.264196 1064.51384 0.09851 5.2532E-05 -0.19432 -0.00010363 -0.095814 -5.1094E-05 533.2640766688288 125.34 0.88861 125.34 124.86 125.75 0 41 24 2 0 0 0 0.039785 4 24747 24666;24708;24747;24755 75.761 25.901 1 4802500 40887 4821 27227 27243 40246;40247;40248;40249 40248 -0.015837416616705013 SENNIQTIF 9 Unmodified _SENNIQTIF_ 0 0 0 nc|ENSG00000150093|P05556-2|ITGB1;ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1 nc|ENSG00000150093|P05556-2|ITGB1 nc|ENSG00000150093|P05556-2|ITGB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27685546875 2 533.264196 1064.51384 0.084145 4.4871E-05 0.18178 9.6935E-05 0.26592 0.00014181 533.264194077401 130.07 0.85907 125.43 124.97 125.83 -4.6359 57 22 3 0 0 0 2.3519E-05 4 25599 25573;25599;25619;25661 134.3 41.804 1 7706800 40888 4821 27227 27243 40250;40251;40252;40253 40251 -0.015837416616705013 SENNIQTIF 9 Unmodified _SENNIQTIF_ 0 0 0 nc|ENSG00000150093|P05556-2|ITGB1;ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1 nc|ENSG00000150093|P05556-2|ITGB1 nc|ENSG00000150093|P05556-2|ITGB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2640380859375 2 533.264196 1064.51384 0.40668 0.00021687 -0.20554 -0.00010961 0.20113 0.00010726 533.2639570206389 130.24 1.017 125.4 125.01 126.03 -4.8355 51 21 3 0 0 0 0.0087568 3 24987 24950;24987;25036 107.19 39.106 1 6692000 40889 4821 27227 27243 40254;40255;40256 40255 -0.015837416616705013 SENNIQTIF 9 Unmodified _SENNIQTIF_ 0 0 0 nc|ENSG00000150093|P05556-2|ITGB1;ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1 nc|ENSG00000150093|P05556-2|ITGB1 nc|ENSG00000150093|P05556-2|ITGB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.264404296875 2 533.264196 1064.51384 0.22608 0.00012056 -0.35344 -0.00018848 -0.12736 -6.7917E-05 533.2639106493723 130.16 1.0548 125.38 124.75 125.8 -4.7725 59 28 3 0 0 0 0.0087568 3 25023 24981;25023;25077 107.19 39.106 1 5610100 40890 4821 27227 27243 40257;40258;40259 40258 -0.015837416616705013 SENNQPQV 8 Unmodified _SENNQPQV_ 0 0 0 ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant;ANKRD26|p.K1452Rfs*7|1|0.29|ENSG00000107890|chr10:27017653-27017653|T/-|frameshift_variant;ANKRD26|p.N1518Lfs*11|1|0.04|ENSG00000107890|chr10:27014666-27014667|-/AGAATCATAGGAAATAA|frameshift_variant;ANKRD26|p.N1518Ifs*14|1|0.04|ENSG00000107890|chr10:27014665-27014666|-/A|frameshift_variant;ANKRD26|p.Y1555Ifs*2|1|0.28|ENSG00000107890|chr10:27014555-27014556|-/T|frameshift_variant;ANKRD26|p.N1659Kfs*4|1|0.3|ENSG00000107890|chr10:27006939-27006940|-/T|frameshift_variant;ENSG00000107890|ENST00000376087|ANKRD26;ANKRD26|p.G538W|1|0.32|ENSG00000107890|chr10:27053343-27053343|C/A|missense_variant ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.233154296875 2 458.211963 914.409374 NaN NaN NaN NaN NaN NaN NaN 26.956 1 26.956 26.456 27.456 0 0 0 0 0.21015 1 4739 4739 9.544 8.8626 1 40891 160 27228 27244 40260 40260 -0.05125443418376108 SENPVPLTV 9 Unmodified _SENPVPLTV_ 0 0 0 ENSG00000130764|ENST00000378251|LRRC47 ENSG00000130764|ENST00000378251|LRRC47 ENSG00000130764|ENST00000378251|LRRC47 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7400207519531 2 478.258382 954.502212 -0.045773 -2.1891E-05 0.48112 0.0002301 0.43535 0.00020821 478.25840158288713 110.78 1.0119 110.78 110.33 111.34 0 74 28 4 0 0 0 1.3661E-16 1 21811 21811 165.72 93.798 1 34529000 40892 3634 27229 27245 40261 40261 0.02314061314996252 SENPVPLTV 9 Unmodified _SENPVPLTV_ 0 0 0 ENSG00000130764|ENST00000378251|LRRC47 ENSG00000130764|ENST00000378251|LRRC47 ENSG00000130764|ENST00000378251|LRRC47 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7229309082031 2 478.258382 954.502212 0.52898 0.00025299 -0.31693 -0.00015158 0.21204 0.00010141 478.2581391782352 115.08 1.4369 110.77 110.31 111.75 -4.3135 75 40 3 0 0 0 0.012534 2 22111 22089;22111 99.755 55.897 1 25632000 40893 3634 27229 27245 40262;40263 40263 0.02314061314996252 SENPVPLTV 9 Unmodified _SENPVPLTV_ 0 0 0 ENSG00000130764|ENST00000378251|LRRC47 ENSG00000130764|ENST00000378251|LRRC47 ENSG00000130764|ENST00000378251|LRRC47 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.258382 954.502212 0.21136 0.00010108 0.15583 7.4525E-05 0.36718 0.00017561 478.25832842884586 115.36 0.92114 110.8 110.33 111.25 -4.555 0.036683 9.4859E-06 NaN 165.72 54 25 3 NaN NaN NaN NaN 0 NaN NaN 0 18801000 40894 3634 27229 27245 0.02314061314996252 SENQKPGGY 9 Unmodified _SENQKPGGY_ 0 0 0 nc|ENSG00000173809|Q587J7|TDRD12 nc|ENSG00000173809|Q587J7|TDRD12 nc|ENSG00000173809|Q587J7|TDRD12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2676696777344 2 490.227613 978.440674 0.19487 9.5532E-05 -0.14269 -6.9952E-05 0.052181 2.558E-05 490.22765349519017 22.206 0.94239 22.206 21.737 22.679 0 46 26 2 0 0 0 0.44262 1 3785 3785 23.148 1.4018 1 1488100 40895 12469 27230 27246 40264 40264 -0.049408703842800605 SENREWAS 8 Unmodified _SENREWAS_ 0 0 0 REV__ENSG00000154493|ENST00000488181|C10orf90 REV__ENSG00000154493|ENST00000488181|C10orf90 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26580810546875 2 489.717413 977.420273 0.22953 0.00011241 -0.4878 -0.00023889 -0.25827 -0.00012648 489.71724741252297 28.982 0.49087 28.982 28.704 29.195 0 18 13 2 0 0 0 0.60622 1 5145 5145 21.747 1.293 1 1222300 + 40896 17184 27231 27247 40265 40265 -0.06934041044098649 SENTRPKF 8 Unmodified _SENTRPKF_ 0 0 0 SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant;ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2644348144531 2 489.753798 977.493044 -0.29788 -0.00014589 -0.39872 -0.00019527 -0.6966 -0.00034116 489.75359726945425 52.497 0.70106 49.402 49.094 49.795 -3.0954 27 19 2 0 0 0 0.89552 1 9636 9636 4.756 0 1 877410 40897 5395 27232 27248 40266 40266 0.0033971274932582674 SENVGPPAA 9 Unmodified _SENVGPPAA_ 0 0 0 nc|ENSG00000149930|Q9UL54-2|TAOK2;ENST00000570844.1_1_16:30002083-30002886:+|nuORF nc|ENSG00000149930|Q9UL54-2|TAOK2 nc|ENSG00000149930|Q9UL54-2|TAOK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.322265625 2 421.20615 840.397747 -0.011432 -4.8152E-06 0.31431 0.00013239 0.30288 0.00012757 421.2062016878213 35.927 0.98428 33.65 33 33.984 -2.2766 40 27 2 0 0 0 0.79204 1 6379 6379 16.942 14.883 1 828860 40898 12382 27233 27249 40267 40267 -0.028836404417234007 SENVGPPAA 9 Unmodified _SENVGPPAA_ 0 0 0 nc|ENSG00000149930|Q9UL54-2|TAOK2;ENST00000570844.1_1_16:30002083-30002886:+|nuORF nc|ENSG00000149930|Q9UL54-2|TAOK2 nc|ENSG00000149930|Q9UL54-2|TAOK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 421.20615 840.397747 -0.53249 -0.00022429 1.0001 0.00042123 0.46757 0.00019694 421.20649556694667 35.976 0.78254 33.583 33.055 33.837 -2.3938 -0.010795 0.00043014 NaN 16.942 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1419000 40899 12382 27233 27249 -0.028836404417234007 SENVGPPAA 9 Unmodified _SENVGPPAA_ 0 0 0 nc|ENSG00000149930|Q9UL54-2|TAOK2;ENST00000570844.1_1_16:30002083-30002886:+|nuORF nc|ENSG00000149930|Q9UL54-2|TAOK2 nc|ENSG00000149930|Q9UL54-2|TAOK2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 421.20615 840.397747 0.1147 4.8313E-05 0.1487 6.2632E-05 0.2634 0.00011095 421.2061292984496 35.8 0.90285 33.547 33.125 34.028 -2.2527 -0.045982 -0.00028707 NaN 16.942 36 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1334400 40900 12382 27233 27249 -0.028836404417234007 SENVVVEF 8 Unmodified _SENVVVEF_ 0 0 0 WDR59|p.N160Mfs*28|1|0.43|ENSG00000103091|chr16:74942793-74942793|T/-|frameshift_variant;WDR59|p.Q401Cfs*32|1|0.19|ENSG00000103091|chr16:74915893-74915894|-/CA|frameshift_variant;WDR59|p.L516Yfs*7|1|0.37|ENSG00000103091|chr16:74909598-74909598|G/-|frameshift_variant;nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59 WDR59|p.N160Mfs*28|1|0.43|ENSG00000103091|chr16:74942793-74942793|T/-|frameshift_variant WDR59|p.N160Mfs*28|1|0.43|ENSG00000103091|chr16:74942793-74942793|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5227966308594 2 461.729458 921.444362 0.18658 8.6151E-05 -0.95431 -0.00044063 -0.76773 -0.00035448 461.72936258015574 120.99 0.97482 120.99 120.57 121.54 0 69 26 4 0 0 0 0.47729 1 23818 23818 29.082 0.59474 1 4425600 40901 2165 27234 27250 40268 40268 -0.019502006104175962 SENVVVEF 8 Unmodified _SENVVVEF_ 0 0 0 WDR59|p.N160Mfs*28|1|0.43|ENSG00000103091|chr16:74942793-74942793|T/-|frameshift_variant;WDR59|p.Q401Cfs*32|1|0.19|ENSG00000103091|chr16:74915893-74915894|-/CA|frameshift_variant;WDR59|p.L516Yfs*7|1|0.37|ENSG00000103091|chr16:74909598-74909598|G/-|frameshift_variant;nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59 WDR59|p.N160Mfs*28|1|0.43|ENSG00000103091|chr16:74942793-74942793|T/-|frameshift_variant WDR59|p.N160Mfs*28|1|0.43|ENSG00000103091|chr16:74942793-74942793|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.729458 921.444362 0.049911 2.3045E-05 -0.37236 -0.00017193 -0.32245 -0.00014888 461.7294652500386 125.61 1.0653 121.02 120.33 121.4 -4.5984 0.032094 0.00040484 NaN 29.082 61 29 3 NaN NaN NaN NaN 0 NaN NaN 0 5309300 40902 2165 27234 27250 -0.019502006104175962 SENVVVEF 8 Unmodified _SENVVVEF_ 0 0 0 WDR59|p.N160Mfs*28|1|0.43|ENSG00000103091|chr16:74942793-74942793|T/-|frameshift_variant;WDR59|p.Q401Cfs*32|1|0.19|ENSG00000103091|chr16:74915893-74915894|-/CA|frameshift_variant;WDR59|p.L516Yfs*7|1|0.37|ENSG00000103091|chr16:74909598-74909598|G/-|frameshift_variant;nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59 WDR59|p.N160Mfs*28|1|0.43|ENSG00000103091|chr16:74942793-74942793|T/-|frameshift_variant WDR59|p.N160Mfs*28|1|0.43|ENSG00000103091|chr16:74942793-74942793|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.729458 921.444362 0.26505 0.00012238 -1.1139 -0.00051433 -0.84887 -0.00039195 461.72933540887067 125.78 1.0213 121.01 120.47 121.49 -4.7681 0.02891 -0.00027996 NaN 29.082 77 28 4 NaN NaN NaN NaN 0 NaN NaN 0 5284900 40903 2165 27234 27250 -0.019502006104175962 SENVVVEF 8 Unmodified _SENVVVEF_ 0 0 0 WDR59|p.N160Mfs*28|1|0.43|ENSG00000103091|chr16:74942793-74942793|T/-|frameshift_variant;WDR59|p.Q401Cfs*32|1|0.19|ENSG00000103091|chr16:74915893-74915894|-/CA|frameshift_variant;WDR59|p.L516Yfs*7|1|0.37|ENSG00000103091|chr16:74909598-74909598|G/-|frameshift_variant;nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59 WDR59|p.N160Mfs*28|1|0.43|ENSG00000103091|chr16:74942793-74942793|T/-|frameshift_variant WDR59|p.N160Mfs*28|1|0.43|ENSG00000103091|chr16:74942793-74942793|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.729458 921.444362 0.21006 9.6989E-05 -0.8701 -0.00040175 -0.66004 -0.00030476 461.7294147384932 125.56 1.0206 120.91 120.49 121.51 -4.6495 -0.068549 -5.4803E-05 NaN 29.082 61 28 3 NaN NaN NaN NaN 0 NaN NaN 0 3873100 40904 2165 27234 27250 -0.019502006104175962 SENWRVDSA 9 Unmodified _SENWRVDSA_ 0 0 0 ACP1|p.D57*|1|0.34|ENSG00000143727|chr2:272080-272081|-/C|frameshift_variant;ACP1|p.P56Lfs*9|1|0.39|ENSG00000143727|chr2:272081-272081|C/-|frameshift_variant;ENST00000405364.2_1_2:269313-272255:+|nuORF;ENST00000480874.5_1_2:264964-275202:+|nuORF;nc|ENSG00000143727|P24666-4|ACP1;ENSG00000143727|ENST00000272065|ACP1;ENST00000484464.5_1_2:265208-277301:+|nuORF ACP1|p.D57*|1|0.34|ENSG00000143727|chr2:272080-272081|-/C|frameshift_variant ACP1|p.D57*|1|0.34|ENSG00000143727|chr2:272080-272081|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2711791992188 2 532.243795 1062.47304 0.44414 0.00023639 -0.65956 -0.00035105 -0.21542 -0.00011466 532.2432952603244 47.003 0.56518 47.003 46.695 47.26 0 38 15 3 0 0 0 0.31598 1 8846 8846 30.703 13.591 1 4780300 40905 35 27235 27251 40269 40269 -0.055700829812849406 SENWRVDSA 9 Unmodified _SENWRVDSA_ 0 0 0 ACP1|p.D57*|1|0.34|ENSG00000143727|chr2:272080-272081|-/C|frameshift_variant;ACP1|p.P56Lfs*9|1|0.39|ENSG00000143727|chr2:272081-272081|C/-|frameshift_variant;ENST00000405364.2_1_2:269313-272255:+|nuORF;ENST00000480874.5_1_2:264964-275202:+|nuORF;nc|ENSG00000143727|P24666-4|ACP1;ENSG00000143727|ENST00000272065|ACP1;ENST00000484464.5_1_2:265208-277301:+|nuORF ACP1|p.D57*|1|0.34|ENSG00000143727|chr2:272080-272081|-/C|frameshift_variant ACP1|p.D57*|1|0.34|ENSG00000143727|chr2:272080-272081|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2630615234375 2 532.243795 1062.47304 -0.019212 -1.0226E-05 -0.2954 -0.00015723 -0.31462 -0.00016745 532.2435768629448 50.051 0.60199 47.044 46.774 47.376 -3.0068 46 17 4 0 0 0 0.33094 2 9226 9226;9231 29.841 11.694 1 4459700 40906 35 27235 27251 40270;40271 40270 -0.055700829812849406 SENWRVDSA 9 Unmodified _SENWRVDSA_ 0 0 0 ACP1|p.D57*|1|0.34|ENSG00000143727|chr2:272080-272081|-/C|frameshift_variant;ACP1|p.P56Lfs*9|1|0.39|ENSG00000143727|chr2:272081-272081|C/-|frameshift_variant;ENST00000405364.2_1_2:269313-272255:+|nuORF;ENST00000480874.5_1_2:264964-275202:+|nuORF;nc|ENSG00000143727|P24666-4|ACP1;ENSG00000143727|ENST00000272065|ACP1;ENST00000484464.5_1_2:265208-277301:+|nuORF ACP1|p.D57*|1|0.34|ENSG00000143727|chr2:272080-272081|-/C|frameshift_variant ACP1|p.D57*|1|0.34|ENSG00000143727|chr2:272080-272081|-/C|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.243795 1062.47304 -0.072273 -3.8467E-05 -0.3131 -0.00016665 -0.38537 -0.00020511 532.2435092369274 50.032 0.55836 47.151 46.87 47.429 -2.8811 0.065778 0.00016178 NaN 30.703 38 15 3 NaN NaN NaN NaN 0 NaN NaN 0 6261400 40907 35 27235 27251 -0.055700829812849406 SENWRVDSA 9 Unmodified _SENWRVDSA_ 0 0 0 ACP1|p.D57*|1|0.34|ENSG00000143727|chr2:272080-272081|-/C|frameshift_variant;ACP1|p.P56Lfs*9|1|0.39|ENSG00000143727|chr2:272081-272081|C/-|frameshift_variant;ENST00000405364.2_1_2:269313-272255:+|nuORF;ENST00000480874.5_1_2:264964-275202:+|nuORF;nc|ENSG00000143727|P24666-4|ACP1;ENSG00000143727|ENST00000272065|ACP1;ENST00000484464.5_1_2:265208-277301:+|nuORF ACP1|p.D57*|1|0.34|ENSG00000143727|chr2:272080-272081|-/C|frameshift_variant ACP1|p.D57*|1|0.34|ENSG00000143727|chr2:272080-272081|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.243795 1062.47304 0.40197 0.00021395 -0.68158 -0.00036277 -0.27961 -0.00014882 532.2433282282097 50.143 0.60427 47.144 46.798 47.402 -2.999 0.058309 -0.00023046 NaN 30.703 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 6481700 40908 35 27235 27251 -0.055700829812849406 SENYHLPS 8 Unmodified _SENYHLPS_ 0 0 0 ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant;ROS1|p.L1167*|1|0.19|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant;ROS1|p.N1247Mfs*14|1|0.11|ENSG00000047936|chr6:117357918-117357918|T/-|frameshift_variant;ROS1|p.N1821Tfs*2|1|0.44|ENSG00000047936|chr6:117326319-117326319|T/-|frameshift_variant;ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1 ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant;ROS1|p.N1821Tfs*2|1|0.44|ENSG00000047936|chr6:117326319-117326319|T/-|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.147216796875 3 316.147013 945.41921 NaN NaN NaN NaN NaN NaN NaN 99.167 1 95.034 94.534 95.534 -4.1326 0 0 0 0.21486 1 19477 19477 3.2813 1.6287 1 40909 25620;1224 27236 27252 40272 40272 -0.055682554129930395 SENYILRAT 9 Unmodified _SENYILRAT_ 0 0 0 nc|ENSG00000143552|Q5VU65-2|NUP210L;NUP210L|p.F1858Lfs*11|1|0.38|ENSG00000143552|chr1:153992928-153992928|A/-|frameshift_variant;ENSG00000143552|ENST00000368559|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2639770507812 2 533.780013 1065.54547 0.42671 0.00022777 -0.049594 -2.6472E-05 0.37712 0.0002013 533.7798950744327 25.346 0.45462 23.812 23.469 23.924 -1.5342 15 12 2 0 0 0 0.85111 1 4127 4127 3.5965 0 1 531850 40910 4503 27237 27253 40273 40273 0.015322510922715082 SENYKCPGFTV 11 Unmodified _SENYKCPGFTV_ 0 0 0 ENSG00000169594|ENST00000345382|BNC1 ENSG00000169594|ENST00000345382|BNC1 ENSG00000169594|ENST00000345382|BNC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7822265625 2 622.784438 1243.55432 NaN NaN NaN NaN NaN NaN NaN 107.42 1 103.1 102.6 103.6 -4.32 0 0 0 0.12979 1 21155 21155 31.268 1.4278 1 40911 5989 27238 27254 40274 40274 -0.057711433335725815 SEPAPTVVSA 10 Unmodified _SEPAPTVVSA_ 0 0 0 REV__ENST00000490724.6_1_1:161068668-161068821:+|nuORF REV__ENST00000490724.6_1_1:161068668-161068821:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7241516113281 2 479.248015 956.481476 -0.050332 -2.4122E-05 0.89811 0.00043042 0.84778 0.0004063 479.24862344495546 43.125 1.0095 40.519 40.212 41.221 -2.606 67 28 3 0 0 0 0.81109 1 7889 7889 13.042 4.2971 1 5347400 + 40912 22305 27239 27255 40275 40275 0.001494709353437429 SEPETALGDAP 11 Unmodified _SEPETALGDAP_ 0 0 0 REV__ENSG00000148296|ENST00000372022|SURF6 REV__ENSG00000148296|ENST00000372022|SURF6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7752685546875 2 543.751118 1085.48768 NaN NaN NaN NaN NaN NaN NaN 58.747 1 55.496 54.996 55.996 -3.2517 0 0 0 0.15347 1 10920 10920 27.629 4.8925 1 + 40913 16967 27240 27256 40276 40276 -0.05164055623799868 SEPGNQAPD 9 Unmodified _SEPGNQAPD_ 0 0 0 ENSG00000235109|ENST00000344279|ZSCAN31 ENSG00000235109|ENST00000344279|ZSCAN31 ENSG00000235109|ENST00000344279|ZSCAN31 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22412109375 2 457.696146 913.377739 -0.27762 -0.00012706 -1.3036 -0.00059663 -1.5812 -0.0007237 457.69611368354083 41.63 1.2438 38.995 38.221 39.465 -2.6348 82 35 3 0 0 0 0.62102 1 7705 7705 11.64 2.2929 1 2462200 40914 7821 27241 27257 40277 40277 -0.08241436172340855 SEPGPPLR 8 Unmodified _SEPGPPLR_ 0 0 0 ENST00000602583.5_1_16:85741395-85741617:-|nuORF ENST00000602583.5_1_16:85741395-85741617:-|nuORF ENST00000602583.5_1_16:85741395-85741617:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.2188415527344 2 426.732335 851.450116 0.036072 1.5393E-05 0.47865 0.00020425 0.51472 0.00021965 426.7324680935797 56.393 0.94997 53.203 52.565 53.515 -3.1895 33 26 2 0 0 0 0.9455 1 10368 10368 16.942 8.349 1 1785100 40915 11715 27242 27258 40278 40278 0.01844942691900542 SEPGPPLR 8 Unmodified _SEPGPPLR_ 0 0 0 ENST00000602583.5_1_16:85741395-85741617:-|nuORF ENST00000602583.5_1_16:85741395-85741617:-|nuORF ENST00000602583.5_1_16:85741395-85741617:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 426.732335 851.450116 -0.25266 -0.00010782 1.5856 0.00067665 1.333 0.00056883 426.7329313452016 56.043 0.31419 52.867 52.657 52.971 -3.1761 -0.16836 0.00071345 NaN 16.942 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1298900 40916 11715 27242 27258 0.01844942691900542 SEPGTPTDSS 10 Unmodified _SEPGTPTDSS_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;PCLO|p.Q3062Tfs*25|1|0.2|ENSG00000186472|chr7:82951405-82951406|-/G|frameshift_variant;PCLO|p.T3933Nfs*47|1|0.06|ENSG00000186472|chr7:82916188-82916189|-/T|frameshift_variant;PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant;PCLO|p.M3036Tfs*24|1|0.06|ENSG00000186472|chr7:82951481-82951482|-/G|frameshift_variant;PCLO|p.Y3007Lfs*2|1|0.28|ENSG00000186472|chr7:82951935-82951936|-/A|frameshift_variant ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2579650878906 2 489.206544 976.398534 0.16924 8.2792E-05 0.96883 0.00047396 1.1381 0.00055675 489.2061222632123 20.573 0.95275 20.573 20.134 21.087 0 49 26 3 0 0 0 0.74842 1 3496 3496 6.2058 0 1 772210 40917 7060 27243 27259 40279 40279 -0.0906089058331645 SEPHDFFY 8 Unmodified _SEPHDFFY_ 0 0 0 REV__nc|ENSG00000249437|Q13075-2|NAIP REV__nc|ENSG00000249437|Q13075-2|NAIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2803344726562 2 521.219257 1040.42396 0.2487 0.00012963 -1.1098 -0.00057846 -0.86112 -0.00044883 521.2188458939562 28.981 1.4631 28.981 28.318 29.782 0 98 41 3 0 0 0 0.69887 1 5073 5073 14.582 1.5392 1 7839900 + 40918 19821 27244 27260 40280 40280 -0.09463371270226162 SEPHDFFY 8 Unmodified _SEPHDFFY_ 0 0 0 REV__nc|ENSG00000249437|Q13075-2|NAIP REV__nc|ENSG00000249437|Q13075-2|NAIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2567749023438 2 521.219257 1040.42396 0.15173 7.9087E-05 -0.88626 -0.00046194 -0.73453 -0.00038285 521.2188864533636 30.864 1.7229 28.747 28.189 29.912 -2.1167 110 48 3 0 0 0 0.6199 1 5538 5538 20.871 1.4322 1 8156100 + 40919 19821 27244 27260 40281 40281 -0.09463371270226162 SEPHILETLKP 11 Unmodified _SEPHILETLKP_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.3218994140625 3 421.902961 1262.68705 0.11446 4.8289E-05 -1.0224 -0.00043137 -0.90799 -0.00038308 421.9019377355571 33.237 0.44305 31.021 30.739 31.182 -2.2158 16 12 2 0 0 0 0.96192 1 5800 5800 0.45452 0.31463 1 709640 40920 5189 27245 27261 40282 40282 0.06621624394756509 SEPITFKFP 9 Unmodified _SEPITFKFP_ 0 0 0 REV__ENSG00000196781|ENST00000376499|TLE1 REV__ENSG00000196781|ENST00000376499|TLE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2844848632812 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 95.315 1 91.124 90.624 91.624 -4.1911 0 0 0 0.21065 1 18190 18190 20.454 1.1966 1 + 40921 19280 27246 27262 40283 40283 0.024552247287829232 SEPKLILD 8 Unmodified _SEPKLILD_ 0 0 0 ENSG00000141639|ENST00000400384|MAPK4 ENSG00000141639|ENST00000400384|MAPK4 ENSG00000141639|ENST00000400384|MAPK4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.238037109375 2 457.7633 913.512048 0.56278 0.00025762 1.072 0.00049073 1.6348 0.00074834 457.7638082403911 45.038 0.52591 45.038 44.639 45.165 0 22 14 2 0 0 0 0.71876 1 8393 8393 11.64 0 1 838310 40922 4389 27247 27263 40284 40284 0.05183249320384675 SEPPSRPPP 9 Unmodified _SEPPSRPPP_ 0 0 0 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78704833984375 2 482.248349 962.482145 0.0013194 6.3628E-07 0.082637 3.9852E-05 0.083957 4.0488E-05 482.2483646029222 20.614 1.5007 20.614 20.134 21.635 0 70 42 2 0 0 0 0.54076 1 3412 3412 34.102 1.797 1 4079000 + 40923 17616 27248 27264 40285 40285 -0.0005968962494762309 SEPPSRPPP 9 Unmodified _SEPPSRPPP_ 0 0 0 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7803955078125 2 482.248349 962.482145 -0.089553 -4.3187E-05 0.24913 0.00012014 0.15958 7.6957E-05 482.2484705747603 22.087 1.2621 20.633 20.245 21.507 -1.4535 64 35 2 0 0 0 0.57447 1 3669 3669 14.838 0.93222 1 2526100 + 40924 17616 27248 27264 40286 40286 -0.0005968962494762309 SEPPSRPPP 9 Unmodified _SEPPSRPPP_ 0 0 0 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76617431640625 2 482.248349 962.482145 -0.14775 -7.125E-05 1.0631 0.00051268 0.91536 0.00044143 482.2488742128159 21.253 0.2792 19.869 19.793 20.072 -1.3847 9 7 2 0 0 0 0.84208 1 3337 3337 11.64 4.3511 1 246030 + 40925 17616 27248 27264 40287 40287 -0.0005968962494762309 SEPPSRPPP 9 Unmodified _SEPPSRPPP_ 0 0 0 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7829895019531 2 482.248349 962.482145 -0.646 -0.00031153 0.65823 0.00031743 0.012224 5.8951E-06 482.2486599640695 22.403 1.3362 20.614 20.222 21.558 -1.7886 68 38 2 0 0 0 0.48644 1 3669 3669 20.454 1.1966 1 1949400 + 40926 17616 27248 27264 40288 40288 -0.0005968962494762309 SEPQDEHV 8 Unmodified _SEPQDEHV_ 0 0 0 ENSG00000162510|ENST00000373765|MATN1 ENSG00000162510|ENST00000373765|MATN1 ENSG00000162510|ENST00000373765|MATN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.13922119140625 3 314.138406 939.393389 NaN NaN NaN NaN NaN NaN NaN 61.272 1 57.903 57.403 58.403 -3.3694 0 0 0 0.21486 1 11423 11423 1.6526 0.87609 1 40927 5337 27249 27265 40289 40289 -0.07873149655279121 SEPQDEHV 8 Unmodified _SEPQDEHV_ 0 0 0 ENSG00000162510|ENST00000373765|MATN1 ENSG00000162510|ENST00000373765|MATN1 ENSG00000162510|ENST00000373765|MATN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1387939453125 3 314.138406 939.393389 NaN NaN NaN NaN NaN NaN NaN 67.63 1 64.303 63.803 64.803 -3.3268 0 0 0 0.21486 1 12755 12755 1.4819 0 1 40928 5337 27249 27265 40290 40290 -0.07873149655279121 SEPRSLPQAG 10 Unmodified _SEPRSLPQAG_ 0 0 0 REV__nc|ENSG00000256463|Q9BXA9-2|SALL3 REV__nc|ENSG00000256463|Q9BXA9-2|SALL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2710571289062 2 521.269813 1040.52507 0.093414 4.8694E-05 -0.91793 -0.00047849 -0.82451 -0.00042979 521.2697562439315 26.575 0.33993 24.653 24.469 24.808 -1.9222 19 9 3 0 0 0 0.52989 1 4397 4397 1.9064 0.57684 1 654290 + 40929 19864 27250 27266 40291 40291 0.006430804324736528 SEPRSLPQAG 10 Unmodified _SEPRSLPQAG_ 0 0 0 REV__nc|ENSG00000256463|Q9BXA9-2|SALL3 REV__nc|ENSG00000256463|Q9BXA9-2|SALL3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.269813 1040.52507 0.25282 0.00013179 -0.072457 -3.777E-05 0.18037 9.402E-05 521.2696812142775 24.764 0.29899 24.764 24.58 24.879 0 0.062605 0.00020303 NaN 1.9064 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 947170 + 40930 19864 27250 27266 0.006430804324736528 SEPRSLPQAG 10 Unmodified _SEPRSLPQAG_ 0 0 0 REV__nc|ENSG00000256463|Q9BXA9-2|SALL3 REV__nc|ENSG00000256463|Q9BXA9-2|SALL3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.269813 1040.52507 0.851 0.0004436 -0.67358 -0.00035112 0.17742 9.2485E-05 521.2694432790267 26.455 0.37909 24.673 24.449 24.828 -1.7821 -0.0284 -0.00042366 NaN 1.9064 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 735560 + 40931 19864 27250 27266 0.006430804324736528 SEPRSLPQAG 10 Unmodified _SEPRSLPQAG_ 0 0 0 REV__nc|ENSG00000256463|Q9BXA9-2|SALL3 REV__nc|ENSG00000256463|Q9BXA9-2|SALL3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.269813 1040.52507 0.093414 4.8694E-05 -0.91793 -0.00047849 -0.82451 -0.00042979 521.2697562439315 26.575 0.33993 24.653 24.469 24.808 -1.9222 -0.048506 -0.00067841 NaN 1.9064 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 654290 + 40932 19864 27250 27266 0.006430804324736528 SEPRWSCG 8 Unmodified _SEPRWSCG_ 0 0 0 REV__ENST00000334166.8_1_2:150187154-150294174:+|nuORF REV__ENST00000334166.8_1_2:150187154-150294174:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.80169677734375 3 307.80096 920.381051 NaN NaN NaN NaN NaN NaN NaN 57.58 1 57.58 57.08 58.08 0 0 0 0 0.22757 1 11011 11011 1.7423 0 1 + 40933 20642 27251 27267 40292 40292 -0.08232464599302602 SEPTPAAPT 9 Unmodified _SEPTPAAPT_ 0 0 0 REV__nc|ENSG00000167646|Q8N9W5-7|DNAAF3 REV__nc|ENSG00000167646|Q8N9W5-7|DNAAF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22711181640625 2 435.713808 869.413062 0.27079 0.00011799 -0.27708 -0.00012073 -0.0062902 -2.7407E-06 435.7136327371892 38.8 1.7153 38.8 38.037 39.752 0 163 48 5 0 0 0 0.45972 1 7240 7240 13.535 10.652 1 39128000 + 40934 17950 27252 27268 40293 40293 -0.026867736445410628 SEPTRSVSV 9 Unmodified _SEPTRSVSV_ 0 0 0 REV__ENST00000554415.5_1_14:21492198-21493677:-|nuORF REV__ENST00000554415.5_1_14:21492198-21493677:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25469970703125 2 481.251089 960.487624 1.213 0.00058376 1.884 0.00090666 3.097 0.0014904 481.25230841015815 25.488 0.69551 23.84 23.686 24.382 -1.6482 27 19 2 0 0 0 0.34411 1 4518 4518 29.082 6.3453 1 1206100 + 40935 22973 27253 27269 40294 40294 0.005799891668630153 SEPVDCPPL 9 Unmodified _SEPVDCPPL_ 0 0 0 REV__IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant REV__IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73077392578125 2 478.723318 955.432083 0.32936 0.00015767 0.47238 0.00022614 0.80173 0.00038381 478.7234255228666 79.971 2.3781 79.971 79.132 81.51 0 120 67 2 0 0 0 0.67531 1 15402 15402 7.9102 0 1 3798900 + 40936 14420 27254 27270 40295 40295 -0.04741560345121343 SEPVLFLGV 9 Unmodified _SEPVLFLGV_ 0 0 0 ENST00000355621.7_1_7:129474025-129474103:-|nuORF ENST00000355621.7_1_7:129474025-129474103:-|nuORF ENST00000355621.7_1_7:129474025-129474103:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2508850097656 2 480.773668 959.532783 0.15756 7.5749E-05 -0.15709 -7.5527E-05 0.00046118 2.2172E-07 480.7735610407316 152.53 1.003 147.77 147.24 148.24 -4.7523 37 27 2 0 0 0 0.49001 1 30249 30249 28.487 0 1 1543300 40937 8958 27255 27271 40296 40296 0.05139839700041193 SEPVLTQTS 9 Unmodified _SEPVLTQTS_ 0 0 0 nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD nc|ENSG00000153707|P23468-3|PTPRD nc|ENSG00000153707|P23468-3|PTPRD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2537536621094 2 481.245472 960.476391 0.33107 0.00015933 -0.67529 -0.00032498 -0.34421 -0.00016565 481.24511053279184 67.672 0.45659 64.176 63.89 64.346 -3.4965 14 12 2 0 0 0 0.17935 1 12656 12656 39.95 3.8227 1 1053500 40938 4975 27256 27272 40297 40297 -0.0054283292729451205 SEPVVEDERLH 11 Unmodified _SEPVVEDERLH_ 0 0 0 nc|ENSG00000198363|Q12797-9|ASPH;nc|ENSG00000198363|Q12797-6|ASPH;nc|ENSG00000198363|Q12797-11|ASPH;nc|ENSG00000198363|Q12797-5|ASPH;nc|ENSG00000198363|Q12797-8|ASPH;nc|ENSG00000198363|Q12797-2|ASPH;ASPH|p.P302Sfs*14|1|0.37|ENSG00000198363|chr8:61633713-61633714|-/A|frameshift_variant;ASPH|p.P302Lfs*33|1|0.27|ENSG00000198363|chr8:61633714-61633714|A/-|frameshift_variant;nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH nc|ENSG00000198363|Q12797-9|ASPH nc|ENSG00000198363|Q12797-9|ASPH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2163391113281 3 437.217608 1308.63099 NaN NaN NaN NaN NaN NaN NaN 73.62 1 73.62 73.12 74.12 0 0 0 0 0.23159 1 14288 14288 7.0371 2.8476 1 40939 237 27257 27273 40298 40298 -0.010976285127071606 SEQASRYTSSQ 11 Unmodified _SEQASRYTSSQ_ 0 0 0 REV__QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant REV__QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7801513671875 2 622.281106 1242.54766 0.42089 0.00026191 -0.61022 -0.00037973 -0.18933 -0.00011782 622.2807321448873 31.151 0.27885 31.151 31.04 31.318 0 10 7 2 0 0 0 0.444 1 5601 5601 30.703 2.2089 1 941380 + 40940 14147 27258 27274 40299 40299 -0.06391364960563806 SEQASRYTSSQ 11 Unmodified _SEQASRYTSSQ_ 0 0 0 REV__QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant REV__QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7821655273438 2 622.281106 1242.54766 0.47074 0.00029293 -0.22903 -0.00014252 0.2417 0.00015041 622.2808551227573 33.153 0.32209 31.006 30.865 31.187 -2.1468 13 8 2 0 0 0 0.48654 1 5798 5798 37.075 2.1426 1 968720 + 40941 14147 27258 27274 40300 40300 -0.06391364960563806 SEQASRYTSSQ 11 Unmodified _SEQASRYTSSQ_ 0 0 0 REV__QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant REV__QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76318359375 2 622.281106 1242.54766 0.61164 0.00038061 -0.193 -0.0001201 0.41864 0.00026051 622.2811741564974 33.194 0.40762 30.978 30.84 31.248 -2.2158 18 11 2 0 0 0 0.47834 1 5807 5807 38.615 3.6827 1 487220 + 40942 14147 27258 27274 40301 40301 -0.06391364960563806 SEQDSGASQA 10 Unmodified _SEQDSGASQA_ 0 0 0 REV__nc|ENSG00000066827|Q9P243-4|ZFAT REV__nc|ENSG00000066827|Q9P243-4|ZFAT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2586364746094 2 490.201793 978.389032 0.20158 9.8816E-05 -0.94656 -0.000464 -0.74497 -0.00036519 490.2013850566347 36.604 0.92196 34.256 34.106 35.028 -2.3479 40 26 2 0 0 0 0.8126 1 6523 6523 24.991 11.085 1 565310 + 40943 14205 27259 27275 40302 40302 -0.10102658868845538 SEQEELRDKRA 11 Unmodified _SEQEELRDKRA_ 0 0 0 ENST00000536689.5_1_19:10664629-10668377:-|nuORF;ENST00000537363.5_1_19:10664629-10670250:-|nuORF;ENSG00000129347|ENST00000312962|KRI1 ENST00000536689.5_1_19:10664629-10668377:-|nuORF ENST00000536689.5_1_19:10664629-10668377:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76495361328125 3 454.232028 1359.67426 -0.55784 -0.00025339 0.60451 0.00027459 0.046669 2.1199E-05 454.232241098074 16.117 0.17699 14.901 14.797 14.974 -1.2159 8 4 2 0 0 0 0.65283 1 2516 2516 14.957 4.6419 1 695570 40944 3563 27260 27276 40303 40303 0.008805612645801375 SEQEELRDKRA 11 Unmodified _SEQEELRDKRA_ 0 0 0 ENST00000536689.5_1_19:10664629-10668377:-|nuORF;ENST00000537363.5_1_19:10664629-10670250:-|nuORF;ENSG00000129347|ENST00000312962|KRI1 ENST00000536689.5_1_19:10664629-10668377:-|nuORF ENST00000536689.5_1_19:10664629-10668377:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 454.232028 1359.67426 0.14866 6.7528E-05 -0.0078151 -3.5499E-06 0.14085 6.3978E-05 454.23172522628204 15.012 0.24581 15.012 14.842 15.087 0 0.050909 -0.00058534 NaN 14.957 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 420080 40945 3563 27260 27276 0.008805612645801375 SEQEFSGQVA 10 Unmodified _SEQEFSGQVA_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;ENST00000471834.1_1_6:152690575-152702320:-|nuORF;nc|ENSG00000131018|Q8NF91-12|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2842407226562 2 541.24346 1080.47237 0.53429 0.00028918 0.026112 1.4133E-05 0.5604 0.00030331 541.243308977068 49.602 0.89812 49.602 49.232 50.13 0 71 25 4 0 0 0 0.10945 1 9388 9388 74.2 28.5 1 13917000 40946 3655 27261 27277 40304 40304 -0.06464922420968833 SEQEFSGQVA 10 Unmodified _SEQEFSGQVA_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;ENST00000471834.1_1_6:152690575-152702320:-|nuORF;nc|ENSG00000131018|Q8NF91-12|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.274169921875 2 541.24346 1080.47237 0.011678 6.3205E-06 1.0771 0.00058296 1.0888 0.00058928 541.2437735595895 52.638 0.72859 49.754 49.449 50.178 -2.8837 48 20 3 0 0 0 0.097962 3 10024 9976;10024;10035 79.596 29.663 1 8695800 40947 3655 27261 27277 40305;40306;40307 40306 -0.06464922420968833 SEQEFSGQVA 10 Unmodified _SEQEFSGQVA_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;ENST00000471834.1_1_6:152690575-152702320:-|nuORF;nc|ENSG00000131018|Q8NF91-12|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2830200195312 2 541.24346 1080.47237 0.11656 6.3086E-05 0.96808 0.00052397 1.0846 0.00058705 541.2437290173943 52.862 0.80788 49.774 49.405 50.213 -3.0876 46 22 3 0 0 0 0.17065 2 9761 9750;9761 61.602 27.2 1 5858200 40948 3655 27261 27277 40308;40309 40309 -0.06464922420968833 SEQEFSGQVA 10 Unmodified _SEQEFSGQVA_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;ENST00000471834.1_1_6:152690575-152702320:-|nuORF;nc|ENSG00000131018|Q8NF91-12|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 541.24346 1080.47237 0.03389 1.8343E-05 1.0506 0.00056861 1.0845 0.00058695 541.2437413197237 52.873 0.78849 49.778 49.484 50.272 -3.0954 0.050436 0.00042204 NaN 79.596 33 22 2 NaN NaN NaN NaN 0 NaN NaN 0 6909000 40949 3655 27261 27277 -0.06464922420968833 SEQFKAQFP 9 Unmodified _SEQFKAQFP_ 0 0 0 nc|ENSG00000256463|Q9BXA9-3|SALL3;nc|ENSG00000256463|Q9BXA9-4|SALL3;nc|ENSG00000256463|Q9BXA9-2|SALL3;ENSG00000256463|ENST00000537592|SALL3 nc|ENSG00000256463|Q9BXA9-3|SALL3 nc|ENSG00000256463|Q9BXA9-3|SALL3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2662963867188 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 130.18 1 125.54 125.04 126.04 -4.6359 0 0 0 0.19343 1 25656 25656 0.37959 0 1 40950 7937 27262 27278 40310 40310 -0.01303133936426093 SEQFTAMF 8 Unmodified _SEQFTAMF_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;TUBB4A|p.R390Q|1|0.28|ENSG00000104833|chr19:6495330-6495330|C/T|missense_variant;ENST00000445286.3_1_12:38597181-38597481:+|nuORF;ENST00000402141.1_1_6:143757385-143757844:+|nuORF;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF ENSG00000196230|ENST00000327892|TUBB;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.241943359375 2 480.710211 959.405868 -0.011557 -5.5554E-06 0.17437 8.3823E-05 0.16282 7.8267E-05 480.71025553674116 146.63 0.79594 146.63 146.11 146.91 0 42 22 3 0 0 0 0.19607 2 29252 29248;29252 46.021 30.145 1 3709700 40951 2259;6276;8472 27263 27279 40311;40312 40312 -0.0754582951658449 SEQFTAMF 8 Unmodified _SEQFTAMF_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;TUBB4A|p.R390Q|1|0.28|ENSG00000104833|chr19:6495330-6495330|C/T|missense_variant;ENST00000445286.3_1_12:38597181-38597481:+|nuORF;ENST00000402141.1_1_6:143757385-143757844:+|nuORF;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF ENSG00000196230|ENST00000327892|TUBB;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78167724609375 2 480.710211 959.405868 0.15079 7.2488E-05 0.053646 2.5788E-05 0.20444 9.8276E-05 480.7101653843215 151.57 0.92297 146.81 146.43 147.35 -4.7523 55 25 3 0 0 0 0.58432 1 30075 30075 23.148 8.5667 1 9545900 40952 2259;6276;8472 27263 27279 40313 40313 -0.0754582951658449 SEQFTAMF 8 Unmodified _SEQFTAMF_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;TUBB4A|p.R390Q|1|0.28|ENSG00000104833|chr19:6495330-6495330|C/T|missense_variant;ENST00000445286.3_1_12:38597181-38597481:+|nuORF;ENST00000402141.1_1_6:143757385-143757844:+|nuORF;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF ENSG00000196230|ENST00000327892|TUBB;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24835205078125 2 480.710211 959.405868 0.1627 7.8211E-05 -0.17645 -8.4819E-05 -0.013746 -6.6078E-06 480.7101776616915 151.97 0.78221 146.73 146.39 147.18 -5.2365 48 21 3 0 0 0 0.096487 1 29496 29496 51.264 41.72 1 7017400 40953 2259;6276;8472 27263 27279 40314 40314 -0.0754582951658449 SEQFTAMF 8 Unmodified _SEQFTAMF_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;TUBB4A|p.R390Q|1|0.28|ENSG00000104833|chr19:6495330-6495330|C/T|missense_variant;ENST00000445286.3_1_12:38597181-38597481:+|nuORF;ENST00000402141.1_1_6:143757385-143757844:+|nuORF;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF ENSG00000196230|ENST00000327892|TUBB;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2483825683594 2 480.710211 959.405868 0.31682 0.0001523 -0.38531 -0.00018522 -0.06849 -3.2924E-05 480.71006251918993 151.96 0.81302 146.79 146.35 147.16 -5.1759 40 22 2 0 0 0 0.0648 1 29444 29444 39.111 29.567 1 6218800 40954 2259;6276;8472 27263 27279 40315 40315 -0.0754582951658449 SEQISTAGTEA 11 Unmodified _SEQISTAGTEA_ 0 0 0 PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENSG00000068976|ENST00000164139|PYGM;ENST00000532107.2_1_14:51374946-51378571:-|nuORF;nc|ENSG00000068976|P11217-2|PYGM PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7818603515625 2 547.254025 1092.4935 0.35342 0.00019341 -0.24021 -0.00013146 0.11321 6.1955E-05 547.2536330660606 31.002 0.28269 31.002 30.825 31.108 0 14 7 2 0 0 0 0.36112 1 5578 5578 17.572 16.697 1 1083100 40955 1985 27264 27280 40316 40316 -0.049049571121486224 SEQISTAGTEA 11 Unmodified _SEQISTAGTEA_ 0 0 0 PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENSG00000068976|ENST00000164139|PYGM;ENST00000532107.2_1_14:51374946-51378571:-|nuORF;nc|ENSG00000068976|P11217-2|PYGM PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7842407226562 2 547.254025 1092.4935 0.49278 0.00026968 -0.0013917 -7.6159E-07 0.49139 0.00026892 547.2539638366841 33.28 0.44155 31.064 30.774 31.216 -2.2158 28 12 3 0 0 0 0.12917 2 5804 5777;5804 67.081 26.842 1 1892600 40956 1985 27264 27280 40317;40318 40318 -0.049049571121486224 SEQISTAGTEA 11 Unmodified _SEQISTAGTEA_ 0 0 0 PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENSG00000068976|ENST00000164139|PYGM;ENST00000532107.2_1_14:51374946-51378571:-|nuORF;nc|ENSG00000068976|P11217-2|PYGM PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.254025 1092.4935 0.2289 0.00012527 0.064402 3.5244E-05 0.2933 0.00016051 547.2540287909875 33.197 0.48727 30.879 30.627 31.114 -2.3175 -0.11459 0.00010244 NaN 67.081 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2129800 40957 1985 27264 27280 -0.049049571121486224 SEQISTAGTEA 11 Unmodified _SEQISTAGTEA_ 0 0 0 PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENSG00000068976|ENST00000164139|PYGM;ENST00000532107.2_1_14:51374946-51378571:-|nuORF;nc|ENSG00000068976|P11217-2|PYGM PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.254025 1092.4935 0.25838 0.0001414 -0.10117 -5.5364E-05 0.15721 8.6035E-05 547.2540694909292 33.177 0.39209 31.03 30.795 31.187 -2.1468 0.036588 -7.878E-05 NaN 67.081 30 10 4 NaN NaN NaN NaN 0 NaN NaN 0 3005400 40958 1985 27264 27280 -0.049049571121486224 SEQLCPAPA 9 Unmodified _SEQLCPAPA_ 0 0 0 REV__ENST00000315302.6_1_4:183064065-183064260:-|nuORF REV__ENST00000315302.6_1_4:183064065-183064260:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2383117675781 2 458.21566 914.416767 NaN NaN NaN NaN NaN NaN NaN 101.42 1 97.101 96.601 97.601 -4.3173 0 0 0 0.23508 1 19409 19409 10.074 2.1638 1 + 40959 20517 27265 27281 40319 40319 -0.04386427142310367 SEQLLFII 8 Unmodified _SEQLLFII_ 0 0 0 ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;ENST00000506603.5_1_5:79058805-79095436:+|nuORF ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.781982421875 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 100.82 1 96.523 96.023 97.023 -4.297 0 0 0 0.22699 1 19289 19289 0.68139 0 1 40960 5532 27266 27282 40320 40320 0.06612126217100922 SEQLRSFDP 9 Unmodified _SEQLRSFDP_ 0 0 0 REV__MGAT4B|p.R229Q|1|0.19|ENSG00000161013|chr5:179800517-179800517|C/T|missense_variant REV__MGAT4B|p.R229Q|1|0.19|ENSG00000161013|chr5:179800517-179800517|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2648315429688 2 539.76182 1077.50909 0.46624 0.00025166 1.3629 0.00073562 1.8291 0.00098728 539.7627531628249 29.688 1.0524 27.796 27.226 28.279 -1.8928 103 29 5 0 0 0 0.54933 1 5066 5066 22.736 22.736 1 15073000 + 40961 23853 27267 27283 40321 40321 -0.02656625804434043 SEQLRSFDP 9 Unmodified _SEQLRSFDP_ 0 0 0 REV__MGAT4B|p.R229Q|1|0.19|ENSG00000161013|chr5:179800517-179800517|C/T|missense_variant REV__MGAT4B|p.R229Q|1|0.19|ENSG00000161013|chr5:179800517-179800517|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2660522460938 2 539.76182 1077.50909 0.60509 0.00032661 1.4066 0.00075921 2.0117 0.0010858 539.7627606668727 29.808 1.0502 27.734 27.241 28.291 -2.0743 97 29 4 0 0 0 0.54933 2 5108 5064;5108 17.113 12.241 1 13015000 + 40962 23853 27267 27283 40322;40323 40323 -0.02656625804434043 SEQLSEKV 8 Unmodified _SEQLSEKV_ 0 0 0 REV__nc|ENSG00000164675|Q8NA54-2|IQUB REV__nc|ENSG00000164675|Q8NA54-2|IQUB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24853515625 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 22.155 1 22.155 21.655 22.655 0 0 0 0 0.21486 1 3737 3737 5.2307 0 1 + 40963 17702 27268 27284 40324 40324 0.0033318441828669165 SEQLVVGDI 9 Unmodified _SEQLVVGDI_ 0 0 0 ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A ENSG00000075673|ENST00000381946|ATP12A ENSG00000075673|ENST00000381946|ATP12A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2548522949219 2 480.25584 958.497126 -0.38404 -0.00018444 -2.8489 -0.0013682 -3.2329 -0.0015526 480.2559090065529 36.746 0.66029 34.277 33.979 34.639 -2.4688 45 18 3 0 0 0 0.44932 1 6766 6766 22.736 3.4793 1 2793200 40964 1524 27269 27285 40325 40325 0.01621757452392103 SEQPHIYIP 9 Unmodified _SEQPHIYIP_ 0 0 0 nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185;nc|ENSG00000147394|O15231-9|ZNF185;nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-5|ZNF185 nc|ENSG00000147394|O15231-4|ZNF185 nc|ENSG00000147394|O15231-4|ZNF185 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7825317382812 2 542.277106 1082.53966 0.31655 0.00017166 -0.053634 -2.9085E-05 0.26292 0.00014258 542.2769517524547 112.11 1.0385 112.11 111.69 112.73 0 85 29 4 0 0 0 0.55539 1 22050 22050 16.149 4.5088 1 9595900 40965 4699 27270 27286 40326 40326 0.0016915258061089844 SEQPHIYIP 9 Unmodified _SEQPHIYIP_ 0 0 0 nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185;nc|ENSG00000147394|O15231-9|ZNF185;nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-5|ZNF185 nc|ENSG00000147394|O15231-4|ZNF185 nc|ENSG00000147394|O15231-4|ZNF185 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.772705078125 2 542.277106 1082.53966 0.32775 0.00017773 -0.31005 -0.00016814 0.017699 9.5976E-06 542.2769154141596 116.64 1.1806 112.15 111.48 112.66 -4.486 103 33 4 0 0 0 0.55539 2 22982 22982;23010 16.149 6.0752 1 10856000 40966 4699 27270 27286 40327;40328 40327 0.0016915258061089844 SEQPPGLST 9 Unmodified _SEQPPGLST_ 0 0 0 nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22406005859375 2 458.224539 914.434526 -0.040083 -1.8367E-05 0.60919 0.00027915 0.56911 0.00026078 458.2248023389424 48.162 0.45258 45.22 44.972 45.425 -2.9421 17 12 2 0 0 0 0.5685 1 8763 8763 15.248 0.41021 1 713540 40967 1954 27271 27287 40329 40329 -0.026113886158100286 SEQPTLVPS 9 Unmodified _SEQPTLVPS_ 0 0 0 REV__ENSG00000224470|ENST00000427980|ATXN1L REV__ENSG00000224470|ENST00000427980|ATXN1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73309326171875 2 479.248015 956.481476 -0.059199 -2.8371E-05 -1.2031 -0.00057658 -1.2623 -0.00060495 479.2474047438799 73.018 0.63172 73.018 72.749 73.381 0 31 17 2 0 0 0 0.35202 1 14143 14143 38.176 9.094 1 6685200 + 40968 19720 27272 27288 40330 40330 0.001494709353437429 SEQQRIPA 8 Unmodified _SEQQRIPA_ 0 0 0 REV__ENST00000588144.2_1_18:56337845-56339000:-|nuORF REV__ENST00000588144.2_1_18:56337845-56339000:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2461853027344 2 464.745973 927.477394 0.91648 0.00042593 -1.4843 -0.00068982 -0.56781 -0.00026389 464.7452584650176 24.385 0.69278 22.737 22.507 23.199 -1.6482 22 19 2 0 0 0 0.70928 1 4219 4219 16.942 0 1 365590 + 40969 23287 27273 27289 40331 40331 0.010754262322734576 SEQRNRLY 8 Unmodified _SEQRNRLY_ 0 0 0 ENST00000515466.1_1_5:43576000-43602992:-|nuORF ENST00000515466.1_1_5:43576000-43602992:-|nuORF ENST00000515466.1_1_5:43576000-43602992:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2731323242188 2 533.275429 1064.53631 NaN NaN NaN NaN NaN NaN NaN 60.716 1 57.402 56.902 57.902 -3.3139 0 0 0 0.21486 1 11310 11310 9.3474 1.4373 1 40970 10787 27274 27290 40332 40332 0.006619025266218159 SEQSLQLSA 9 Unmodified _SEQSLQLSA_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.765380859375 2 481.743096 961.47164 0.39587 0.00019071 0.15228 7.3358E-05 0.54815 0.00026407 481.7430058670552 70.754 0.70427 67.174 66.73 67.435 -3.5798 32 19 3 0 0 0 0.17935 1 13364 13364 39.95 13.682 1 2635100 40971 1567 27275 27291 40333 40333 -0.010637170700306342 SEQSLQLSA 9 Unmodified _SEQSLQLSA_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2530517578125 2 481.743096 961.47164 0.27264 0.00013134 0.28039 0.00013508 0.55303 0.00026642 481.7429978026704 70.628 0.81473 67.161 66.777 67.592 -3.467 32 22 2 0 0 0 0.71913 1 13370 13370 15.248 0 1 2791800 40972 1567 27275 27291 40334 40334 -0.010637170700306342 SEQVAQVL 8 Unmodified _SEQVAQVL_ 0 0 0 MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;MPDZ|p.K399Nfs*9|1|0.1|ENSG00000107186|chr9:13217184-13217184|T/-|frameshift_variant;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22735595703125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 79.47 1 79.47 78.97 79.97 0 0 0 0 0.22628 1 15464 15464 28.46 4.7381 1 40973 2416 27276 27292 40335 40335 0.019015056264720442 SEQVAQVL 8 Unmodified _SEQVAQVL_ 0 0 0 MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;MPDZ|p.K399Nfs*9|1|0.1|ENSG00000107186|chr9:13217184-13217184|T/-|frameshift_variant;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2300109863281 2 437.23745 872.460347 -0.14211 -6.2135E-05 0.29136 0.00012739 0.14925 6.5259E-05 437.23753279200776 82.954 0.59772 79.346 79.093 79.691 -3.6079 26 16 2 0 0 0 8448 1 16261 16261 23.79 4.3991 1 1961100 40974 2416 27276 27292 40336 40336 0.019015056264720442 SEQVAQVL 8 Unmodified _SEQVAQVL_ 0 0 0 MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;MPDZ|p.K399Nfs*9|1|0.1|ENSG00000107186|chr9:13217184-13217184|T/-|frameshift_variant;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22943115234375 2 437.23745 872.460347 0.0759 3.3186E-05 -0.17706 -7.7419E-05 -0.10116 -4.4233E-05 437.23732306284353 83.392 0.56149 79.518 79.152 79.714 -3.8736 23 15 2 0 0 0 8448 1 15834 15834 39.111 5.5175 1 1735100 40975 2416 27276 27292 40337 40337 0.019015056264720442 SEQVAQVL 8 Unmodified _SEQVAQVL_ 0 0 0 MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;MPDZ|p.K399Nfs*9|1|0.1|ENSG00000107186|chr9:13217184-13217184|T/-|frameshift_variant;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2290954589844 2 437.23745 872.460347 -0.26222 -0.00011465 0.023389 1.0227E-05 -0.23883 -0.00010443 437.2373698961391 83.16 0.82335 79.462 79.076 79.899 -3.6985 34 23 2 0 0 0 0.042326 2 15883 15880;15883 88.904 18.774 1 1600300 40976 2416 27276 27292 40338;40339 40339 0.019015056264720442 SEQVENIKP 9 Unmodified _SEQVENIKP_ 0 0 0 ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1 ENSG00000131504|ENST00000389054|DIAPH1 ENSG00000131504|ENST00000389054|DIAPH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2723999023438 2 522.272021 1042.52949 0.4378 0.00022865 0.83359 0.00043536 1.2714 0.00066401 522.2724026544236 42.99 0.80316 42.99 42.491 43.295 0 35 22 2 0 0 0 0.13707 5 8035 8031;8035;8069;8080;8083 46.022 25.988 1 1394700 40977 3681 27277 27293 40340;40341;40342;40343;40344 40341 0.009925448553985916 SEQVENIKP 9 Unmodified _SEQVENIKP_ 0 0 0 ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1 ENSG00000131504|ENST00000389054|DIAPH1 ENSG00000131504|ENST00000389054|DIAPH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2723999023438 2 522.272021 1042.52949 -0.2337 -0.00012205 1.7536 0.00091585 1.5199 0.0007938 522.2728782980041 45.82 0.72786 42.979 42.619 43.347 -2.8409 34 20 2 0 0 0 0.26842 1 8667 8667 33.445 7.1768 1 1425400 40978 3681 27277 27293 40345 40345 0.009925448553985916 SEQVENIKP 9 Unmodified _SEQVENIKP_ 0 0 0 ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1 ENSG00000131504|ENST00000389054|DIAPH1 ENSG00000131504|ENST00000389054|DIAPH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2734375 2 522.272021 1042.52949 -0.72044 -0.00037627 1.8859 0.00098496 1.1655 0.0006087 522.2728720367923 45.868 0.79296 43.002 42.657 43.45 -2.8653 36 22 2 0 0 0 0.24263 1 8341 8341 34.932 9.5328 1 1896800 40979 3681 27277 27293 40346 40346 0.009925448553985916 SEQVENIKP 9 Unmodified _SEQVENIKP_ 0 0 0 ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1 ENSG00000131504|ENST00000389054|DIAPH1 ENSG00000131504|ENST00000389054|DIAPH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2705078125 2 522.272021 1042.52949 -0.051402 -2.6846E-05 1.016 0.0005306 0.96455 0.00050376 522.2726330422474 45.942 0.69477 43.075 42.677 43.371 -2.8666 32 19 2 0 0 0 0.25976 3 8300 8300;8344;8346 33.445 14.91 1 1156800 40980 3681 27277 27293 40347;40348;40349 40347 0.009925448553985916 SEQVKNVKL 9 Unmodified _SEQVKNVKL_ 0 0 0 FKBP3|p.K118Rfs*45|1|0.05|ENSG00000100442|chr14:45121586-45121586|T/-|frameshift_variant;ENSG00000100442|ENST00000396062|FKBP3 FKBP3|p.K118Rfs*45|1|0.05|ENSG00000100442|chr14:45121586-45121586|T/-|frameshift_variant FKBP3|p.K118Rfs*45|1|0.05|ENSG00000100442|chr14:45121586-45121586|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2799682617188 2 522.806031 1043.59751 0.68821 0.0003598 -1.6731 -0.00087472 -0.98493 -0.00051493 522.804644718605 103.53 0.27805 99.471 99.382 99.66 -4.0543 10 7 2 0 0 0 0.40905 1 19941 19941 21.537 3.3906 1 561500 40981 1980 27278 27294 40350 40350 0.07745414506052839 SEQVPLMSA 9 Oxidation (M) _SEQVPLM(Oxidation (M))SA_ SEQVPLM(1)SA SEQVPLM(44)SA 0 0 1 ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37 ENST00000551200.5_1_12:102471044-102512308:-|nuORF ENST00000551200.5_1_12:102471044-102512308:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2754211425781 2 489.23405 976.453547 0.12605 6.1666E-05 -0.014889 -7.2844E-06 0.11116 5.4382E-05 489.23397733586137 54.494 0.73381 54.494 54.068 54.802 0 44 20 3 0 0 0 0.15274 1 10404 10404 43.772 16.889 1 3134800 40982 1511 27279 27295 40351 40351 11 -0.03562175316403682 SEQVPLMSA 9 Oxidation (M) _SEQVPLM(Oxidation (M))SA_ 0 0 1 ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37 ENST00000551200.5_1_12:102471044-102512308:-|nuORF ENST00000551200.5_1_12:102471044-102512308:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.23405 976.453547 0.00025285 1.237E-07 0.15433 7.5501E-05 0.15458 7.5625E-05 489.2340353806091 57.216 0.81176 54.322 53.957 54.769 -2.8944 -0.15038 8.2126E-05 NaN 43.772 49 22 3 NaN NaN NaN NaN 0 NaN NaN 0 3175700 40983 1511 27279 27295 11 -0.03562175316403682 SEQVPLMSA 9 Oxidation (M) _SEQVPLM(Oxidation (M))SA_ 0 0 1 ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37 ENST00000551200.5_1_12:102471044-102512308:-|nuORF ENST00000551200.5_1_12:102471044-102512308:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.23405 976.453547 0.19444 9.5127E-05 -0.17119 -8.3754E-05 0.023247 1.1373E-05 489.2339337327676 57.717 0.85474 54.465 53.972 54.826 -3.2517 -0.0073782 -0.00023639 NaN 43.772 51 23 3 NaN NaN NaN NaN 0 NaN NaN 0 2740500 40984 1511 27279 27295 11 -0.03562175316403682 SEQVPLMSA 9 Oxidation (M) _SEQVPLM(Oxidation (M))SA_ 0 0 1 ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37 ENST00000551200.5_1_12:102471044-102512308:-|nuORF ENST00000551200.5_1_12:102471044-102512308:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.23405 976.453547 -0.18532 -9.0666E-05 0.30997 0.00015165 0.12465 6.0984E-05 489.2340949214823 57.813 0.84355 54.608 54.008 54.851 -3.2052 0.13553 0.00023442 NaN 43.772 53 23 3 NaN NaN NaN NaN 0 NaN NaN 0 2733600 40985 1511 27279 27295 11 -0.03562175316403682 SEQVPLMSA 9 Unmodified _SEQVPLMSA_ 0 0 0 ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37 ENST00000551200.5_1_12:102471044-102512308:-|nuORF ENST00000551200.5_1_12:102471044-102512308:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2364807128906 2 481.236593 960.458632 -0.050106 -2.4113E-05 -0.10357 -4.984E-05 -0.15367 -7.3953E-05 481.2365677966729 96.471 0.86469 96.471 96.081 96.945 0 66 24 3 0 0 0 0.010502 4 18896 18896;18936;18938;18968 103.42 55.074 1 8807400 40986 1511 27279 27296 40352;40353;40354;40355 40352 -0.02317871453783482 SEQVPLMSA 9 Unmodified _SEQVPLMSA_ 0 0 0 ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37 ENST00000551200.5_1_12:102471044-102512308:-|nuORF ENST00000551200.5_1_12:102471044-102512308:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2366027832031 2 481.236593 960.458632 0.062764 3.0205E-05 -0.032111 -1.5453E-05 0.030653 1.4752E-05 481.2365881807756 100.52 0.97002 96.357 95.94 96.91 -4.1594 76 27 3 0 0 0 0.0048421 5 19751 19697;19751;19799;19808;19849 114.2 65.856 1 14617000 40987 1511 27279 27296 40356;40357;40358;40359;40360 40357 -0.02317871453783482 SEQVPLMSA 9 Unmodified _SEQVPLMSA_ 0 0 0 ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37 ENST00000551200.5_1_12:102471044-102512308:-|nuORF ENST00000551200.5_1_12:102471044-102512308:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24554443359375 2 481.236593 960.458632 0.31742 0.00015275 -0.31683 -0.00015247 0.00059406 2.8588E-07 481.2364544883717 100.74 0.95931 96.438 96.021 96.98 -4.297 76 27 3 0 0 0 0.0048421 4 19320 19263;19310;19317;19320 114.2 55.074 1 13051000 40988 1511 27279 27296 40361;40362;40363;40364 40364 -0.02317871453783482 SEQVPLMSA 9 Unmodified _SEQVPLMSA_ 0 0 0 ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37 ENST00000551200.5_1_12:102471044-102512308:-|nuORF ENST00000551200.5_1_12:102471044-102512308:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23651123046875 2 481.236593 960.458632 0.25708 0.00012372 -0.29477 -0.00014185 -0.037686 -1.8136E-05 481.2364496525289 100.46 0.92568 96.466 96.105 97.031 -3.9895 79 26 4 0 0 0 0.0048421 4 19302 19256;19302;19351;19399 114.2 65.856 1 12141000 40989 1511 27279 27296 40365;40366;40367;40368 40366 -0.02317871453783482 SEQVSHHPP 9 Unmodified _SEQVSHHPP_ 0 0 0 nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;OSBPL6|p.F898Lfs*31|1|0.36|ENSG00000079156|chr2:178394428-178394428|T/-|frameshift_variant;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;ENSG00000141447|ENST00000319481|OSBPL1A;ENSG00000070882|ENST00000313367|OSBPL3;OSBPL1A|p.N883Mfs*4|1|0.46|ENSG00000141447|chr18:24166590-24166590|T/-|frameshift_variant;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENST00000583167.5_1_17:45885659-45892067:-|nuORF;ENST00000579728.5_1_17:45885659-45892067:-|nuORF;nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;ENSG00000006025|ENST00000007414|OSBPL7 nc|ENSG00000079156|Q9BZF3-5|OSBPL6 nc|ENSG00000079156|Q9BZF3-5|OSBPL6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.1761779785156 3 339.829796 1016.46756 -0.4979 -0.0001692 0.43521 0.0001479 -0.062696 -2.1306E-05 339.8298975077377 13.833 1.4998 13.833 13.307 14.807 0 94 42 4 0 0 0 0.35556 1 1975 1975 12.241 7.3436 1 2962300 40990 1591 27280 27297 40369 40369 -0.04001761773088219 SEQVSHHPP 9 Unmodified _SEQVSHHPP_ 0 0 0 nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;OSBPL6|p.F898Lfs*31|1|0.36|ENSG00000079156|chr2:178394428-178394428|T/-|frameshift_variant;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;ENSG00000141447|ENST00000319481|OSBPL1A;ENSG00000070882|ENST00000313367|OSBPL3;OSBPL1A|p.N883Mfs*4|1|0.46|ENSG00000141447|chr18:24166590-24166590|T/-|frameshift_variant;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENST00000583167.5_1_17:45885659-45892067:-|nuORF;ENST00000579728.5_1_17:45885659-45892067:-|nuORF;nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;ENSG00000006025|ENST00000007414|OSBPL7 nc|ENSG00000079156|Q9BZF3-5|OSBPL6 nc|ENSG00000079156|Q9BZF3-5|OSBPL6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 339.829796 1016.46756 -0.6159 -0.0002093 0.68975 0.0002344 0.073846 2.5095E-05 339.82994000363533 14.665 1.1415 13.492 13.107 14.249 -1.173 -0.12353 -3.0518E-05 NaN 12.241 60 32 3 NaN NaN NaN NaN 0 NaN NaN 0 571170 40991 1591 27280 27297 -0.04001761773088219 SEQVTRWAA 9 Unmodified _SEQVTRWAA_ 0 0 0 ENSG00000154727|ENST00000400075|GABPA;ENST00000419271.1_1_7:63353684-63354623:+|nuORF;ENST00000487266.1_1_21:27107719-27124637:+|nuORF ENSG00000154727|ENST00000400075|GABPA ENSG00000154727|ENST00000400075|GABPA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6964721679688 2 524.26453 1046.51451 -0.0047907 -2.5116E-06 -0.029029 -1.5219E-05 -0.03382 -1.773E-05 524.2644963366304 56.448 1.0134 56.448 55.973 56.986 0 66 28 4 0 0 0 0.42092 1 10788 10788 37.075 7.9931 1 5183200 40992 5022 27281 27298 40370 40370 -0.006889022219411345 SEQVTRWAA 9 Unmodified _SEQVTRWAA_ 0 0 0 ENSG00000154727|ENST00000400075|GABPA;ENST00000419271.1_1_7:63353684-63354623:+|nuORF;ENST00000487266.1_1_21:27107719-27124637:+|nuORF ENSG00000154727|ENST00000400075|GABPA ENSG00000154727|ENST00000400075|GABPA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6972045898438 2 524.26453 1046.51451 -0.2009 -0.00010532 0.1045 5.4786E-05 -0.096396 -5.0537E-05 524.264536352538 59.44 1.6128 56.529 55.82 57.433 -2.9105 85 45 3 0 0 0 0.545 1 11376 11376 29.841 8.0939 1 5093200 40993 5022 27281 27298 40371 40371 -0.006889022219411345 SEQVTRWAA 9 Unmodified _SEQVTRWAA_ 0 0 0 ENSG00000154727|ENST00000400075|GABPA;ENST00000419271.1_1_7:63353684-63354623:+|nuORF;ENST00000487266.1_1_21:27107719-27124637:+|nuORF ENSG00000154727|ENST00000400075|GABPA ENSG00000154727|ENST00000400075|GABPA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7002563476562 2 524.26453 1046.51451 -0.38298 -0.00020078 0.24706 0.00012952 -0.13592 -7.1258E-05 524.2647014242116 59.736 1.2017 56.422 55.777 56.979 -3.3139 76 33 4 0 0 0 0.42092 1 11141 11141 43.982 19.961 1 5464400 40994 5022 27281 27298 40372 40372 -0.006889022219411345 SEQVTRWAA 9 Unmodified _SEQVTRWAA_ 0 0 0 ENSG00000154727|ENST00000400075|GABPA;ENST00000419271.1_1_7:63353684-63354623:+|nuORF;ENST00000487266.1_1_21:27107719-27124637:+|nuORF ENSG00000154727|ENST00000400075|GABPA ENSG00000154727|ENST00000400075|GABPA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.692138671875 2 524.26453 1046.51451 0.1811 9.4945E-05 -0.08613 -4.5155E-05 0.094971 4.979E-05 524.2643730626263 59.726 1.2601 56.503 55.769 57.029 -3.2237 90 35 4 0 0 0 0.56124 1 11184 11184 37.075 23.169 1 5361800 40995 5022 27281 27298 40373 40373 -0.006889022219411345 SEQYSKQVI 9 Unmodified _SEQYSKQVI_ 0 0 0 REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2 REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2802124023438 2 541.279846 1080.54514 1.2759 0.00069061 -1.0503 -0.00056853 0.22555 0.00012209 541.2789138361668 24.927 0.27611 23.279 23.095 23.371 -1.6482 15 7 3 0 0 0 0.19311 1 4349 4349 37.974 3.8716 1 460370 + 40996 19116 27282 27299 40374 40374 0.008088313724329055 SEQYSKQVI 9 Unmodified _SEQYSKQVI_ 0 0 0 REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2 REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2796630859375 2 541.279846 1080.54514 0.076865 4.1606E-05 -0.13965 -7.559E-05 -0.062785 -3.3984E-05 541.279712532924 24.409 0.72303 22.875 22.644 23.367 -1.5342 48 20 4 0 0 0 0.30618 1 4034 4034 31.268 3.6395 1 5705900 + 40997 19116 27282 27299 40375 40375 0.008088313724329055 SERAEEMQ 8 Unmodified _SERAEEMQ_ 0 0 0 ABCB5|p.N188Tfs*14|1|0.11|ENSG00000004846|chr7:20643514-20643514|A/-|frameshift_variant;ENSG00000004846|ENST00000404938|ABCB5 ABCB5|p.N188Tfs*14|1|0.11|ENSG00000004846|chr7:20643514-20643514|A/-|frameshift_variant ABCB5|p.N188Tfs*14|1|0.11|ENSG00000004846|chr7:20643514-20643514|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2633361816406 2 490.211106 978.407659 0.60459 0.00029638 -0.979 -0.00047991 -0.3744 -0.00018354 490.2105260993347 101.23 0.77771 101.23 100.66 101.43 0 38 21 2 0 0 0 0.71273 1 19764 19764 12.532 0.89125 1 2455700 40998 15 27283 27300 40376 40376 -0.08240820498633639 SERAGQLEA 9 Unmodified _SERAGQLEA_ 0 0 0 HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant;HOOK2|p.A624Hfs*8|1|0.25|ENSG00000095066|chr19:12763736-12763736|C/-|frameshift_variant;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2 HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2424621582031 2 480.740888 959.467223 -0.0017104 -8.2228E-07 0.031816 1.5295E-05 0.030106 1.4473E-05 480.74086870872117 22.753 1.3972 22.753 22.466 23.863 0 78 39 4 0 0 0 0.12612 2 3906 3906;3935 47.594 7.6371 1 51491000 40999 1852 27284 27301 40377;40378 40377 -0.01413181492955573 SERAGQLEA 9 Unmodified _SERAGQLEA_ 0 0 0 HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant;HOOK2|p.A624Hfs*8|1|0.25|ENSG00000095066|chr19:12763736-12763736|C/-|frameshift_variant;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2 HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.242431640625 2 480.740888 959.467223 0.97771 0.00047003 -0.98484 -0.00047345 -0.0071242 -3.4249E-06 480.7403870869011 24.207 0.69866 22.653 22.355 23.054 -1.5532 53 19 4 0 0 0 0.0071415 3 4194 4194;4221;4238 110.67 25.403 1 39603000 41000 1852 27284 27301 40379;40380;40381 40379 -0.01413181492955573 SERAGQLEA 9 Unmodified _SERAGQLEA_ 0 0 0 HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant;HOOK2|p.A624Hfs*8|1|0.25|ENSG00000095066|chr19:12763736-12763736|C/-|frameshift_variant;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2 HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24237060546875 2 480.740888 959.467223 0.016596 7.9786E-06 -0.0096674 -4.6475E-06 0.0069291 3.3311E-06 480.7408508008268 24.122 0.62664 22.588 22.328 22.955 -1.5342 54 17 4 0 0 0 0.0071415 5 3929 3887;3901;3929;3955;3963 110.67 25.403 1 32877000 41001 1852 27284 27301 40382;40383;40384;40385;40386 40384 -0.01413181492955573 SERAGQLEA 9 Unmodified _SERAGQLEA_ 0 0 0 HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant;HOOK2|p.A624Hfs*8|1|0.25|ENSG00000095066|chr19:12763736-12763736|C/-|frameshift_variant;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2 HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2423095703125 2 480.740888 959.467223 -0.33661 -0.00016182 0.38064 0.00018299 0.044031 2.1167E-05 480.74105285862623 24.341 1.0655 22.488 22.191 23.256 -1.8534 65 30 4 0 0 0 0.0071415 3 3970 3927;3970;4020 110.67 25.403 1 25489000 41002 1852 27284 27301 40387;40388;40389 40388 -0.01413181492955573 SERAHQALVI 10 Unmodified _SERAHQALVI_ 0 0 0 ENSG00000240720|ENST00000458448|LRRD1 ENSG00000240720|ENST00000458448|LRRD1 ENSG00000240720|ENST00000458448|LRRD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2120361328125 3 375.212128 1122.61456 -0.1849 -6.9375E-05 -0.053604 -2.0113E-05 -0.2385 -8.9488E-05 375.2121050850193 20.397 0.42782 20.397 20.204 20.632 0 19 11 2 0 0 0 0.75679 1 3409 3409 3.5871 0.26742 1 2566200 41003 7845 27285 27302 40390 40390 0.058153351118335195 SERAQKWRLSL 11 Unmodified _SERAQKWRLSL_ 0 0 0 ENSG00000204442|ENST00000375915|NALF1 ENSG00000204442|ENST00000375915|NALF1 ENSG00000204442|ENST00000375915|NALF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2388916015625 3 458.59312 1372.75753 0.56305 0.00025821 -1.0512 -0.0004821 -0.4882 -0.00022388 458.5925444431012 100.07 0.44718 100.07 99.826 100.27 0 30 12 3 0 0 0 0.71006 1 19615 19615 11.065 0.16632 1 1938100 41004 7580 27286 27303 40391 40391 0.08606342503094311 SERDETNPP 9 Unmodified _SERDETNPP_ 0 0 0 REV__ENST00000561125.2_1_15:100246921-100252973:+|nuORF REV__ENST00000561125.2_1_15:100246921-100252973:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.700927734375 2 522.73326 1043.45197 -0.90863 -0.00047497 1.2065 0.00063067 0.29786 0.0001557 522.7339247253209 20.141 0.4532 18.816 18.523 18.976 -1.3251 29 12 3 0 0 0 0.73309 1 3058 3058 4.756 0.81161 1 972380 + 41005 14224 27287 27304 40392 40392 -0.0680209308081885 SEREKAEI 8 Unmodified _SEREKAEI_ 0 0 0 DLC1|p.K446R|1|0.11|ENSG00000164741|chr8:13305280-13305280|T/C|missense_variant DLC1|p.K446R|1|0.11|ENSG00000164741|chr8:13305280-13305280|T/C|missense_variant DLC1|p.K446R|1|0.11|ENSG00000164741|chr8:13305280-13305280|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25018310546875 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 95.031 1 90.982 90.482 91.482 -4.0496 0 0 0 0.22847 1 18626 18626 0.68139 0 1 41006 842 27288 27305 40393 40393 0.005799891668516466 SERELEAF 8 Unmodified _SERELEAF_ 0 0 0 HAUS3|p.S199Ffs*30|1|0.32|ENSG00000214367|chr4:2240351-2240352|-/A|frameshift_variant;nc|ENSG00000214367|Q68CZ6-2|HAUS3;HAUS3|p.F576Ifs*5|1|0.3|ENSG00000214367|chr4:2232013-2232014|-/T|frameshift_variant;ENSG00000214367|ENST00000443786|HAUS3 HAUS3|p.S199Ffs*30|1|0.32|ENSG00000214367|chr4:2240351-2240352|-/A|frameshift_variant HAUS3|p.S199Ffs*30|1|0.32|ENSG00000214367|chr4:2240351-2240352|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2760009765625 2 490.737814 979.461075 0.16124 7.9126E-05 -0.26304 -0.00012909 -0.10181 -4.996E-05 490.73759619367956 72.705 0.58478 72.705 72.404 72.989 0 28 16 2 0 0 0 0.94768 1 14064 14064 18.146 6.5061 1 2852200 41007 7725 27289 27306 40394 40394 -0.029476997244614722 SERGGEPLQA 10 Unmodified _SERGGEPLQA_ 0 0 0 REV__ENST00000527010.1_1_11:66496354-66496435:-|nuORF REV__ENST00000527010.1_1_11:66496354-66496435:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2578125 2 522.259445 1042.50434 NaN NaN NaN NaN NaN NaN NaN 21.045 1 21.045 20.545 21.545 0 0 0 0 0.22588 1 3507 3507 8.1555 0 1 + 41008 22695 27290 27307 40395 40395 -0.015215099471788562 SERIFLHDA 9 Unmodified _SERIFLHDA_ 0 0 0 nc|ENSG00000182095|O15417-2|TNRC18;TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 nc|ENSG00000182095|O15417-2|TNRC18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7720947265625 2 544.28018 1086.54581 0.23495 0.00012788 0.22609 0.00012306 0.46104 0.00025093 544.2802039393655 61.116 0.68619 58.183 57.752 58.438 -2.9333 55 19 4 0 0 0 0.26627 1 11778 11778 53.404 9.6316 1 11314000 41009 12500 27291 27308 40396 40396 0.005996708121301708 SERIHRLLQ 9 Unmodified _SERIHRLLQ_ 0 0 0 REV__ENST00000510175.5_1_4:155055-155787:+|nuORF REV__ENST00000510175.5_1_4:155055-155787:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3392333984375 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 32.295 1 30.269 29.769 30.769 -2.0264 0 0 0 0.23508 1 5599 5599 7.2892 2.96 1 + 41010 22536 27292 27309 40397 40397 0.08778730240078403 SERIKKVTY 9 Unmodified _SERIKKVTY_ 0 0 0 tr|U7SLR5|U7SLR5_FUSNUAlkylhydroperoxidereductaseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02145PE=3SV=1 tr|U7SLR5|U7SLR5_FUSNUAlkylhydroperoxidereductaseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02145PE=3SV=1 tr|U7SLR5|U7SLR5_FUSNUAlkylhydroperoxidereductaseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02145PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.22021484375 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 79.005 1 75.495 74.995 75.995 -3.5102 0 0 0 0.23508 1 15429 15429 2.2828 0 1 41011 25991 27293 27310 40398 40398 0.08329389914433705 SERIWRLQ 8 Unmodified _SERIWRLQ_ 0 0 0 nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3 nc|ENSG00000167723|Q8NET8-3|TRPV3 nc|ENSG00000167723|Q8NET8-3|TRPV3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79052734375 2 544.30399 1086.59343 0.28166 0.00015331 -1.4226 -0.00077432 -1.1409 -0.00062101 544.8045756720018 32.27 0.3121 30.243 30.114 30.427 -2.0264 16 8 2 0 0 0 1.0147 1 5624 5624 2.3027 0.24298 1 553330 41012 5841 27294 27311 40399 40399 0.053593698029771986 SERKAFIVE 9 Unmodified _SERKAFIVE_ 0 0 0 nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7;MAP3K7|p.T169Qfs*3|2|0.21|ENSG00000135341|chr6:90556603-90556603|C/-|frameshift_variant;MAP3K7|p.K209Nfs*14|1|0.31|ENSG00000135341|chr6:90553567-90553567|T/-|frameshift_variant nc|ENSG00000135341|O43318-4|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 71.328 1 71.328 70.828 71.828 0 0 0 0 0.23508 1 13819 13819 4.897 0 1 41013 3920 27295 27312 40400 40400 0.0461712798901317 SERKAFIVE 9 Unmodified _SERKAFIVE_ 0 0 0 nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7;MAP3K7|p.T169Qfs*3|2|0.21|ENSG00000135341|chr6:90556603-90556603|C/-|frameshift_variant;MAP3K7|p.K209Nfs*14|1|0.31|ENSG00000135341|chr6:90553567-90553567|T/-|frameshift_variant nc|ENSG00000135341|O43318-4|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 106.32 1 102.23 101.73 102.73 -4.0913 0 0 0 0.23508 1 20445 20445 7.609 2.7119 1 41014 3920 27295 27312 40401 40401 0.0461712798901317 SERKAFIVE 9 Unmodified _SERKAFIVE_ 0 0 0 nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7;MAP3K7|p.T169Qfs*3|2|0.21|ENSG00000135341|chr6:90556603-90556603|C/-|frameshift_variant;MAP3K7|p.K209Nfs*14|1|0.31|ENSG00000135341|chr6:90553567-90553567|T/-|frameshift_variant nc|ENSG00000135341|O43318-4|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 147.58 1 142.52 142.02 143.02 -5.0595 0 0 0 0.23508 1 28576 28576 4.5289 0.58447 1 41015 3920 27295 27312 40402 40402 0.0461712798901317 SERLHRLV 8 Unmodified _SERLHRLV_ 0 0 0 REV__ENST00000263974.4_1_1:28969235-28969286:-|nuORF REV__ENST00000263974.4_1_1:28969235-28969286:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.48028564453125 3 337.201564 1008.58286 NaN NaN NaN NaN NaN NaN NaN 96.11 1 91.901 91.401 92.401 -4.2087 0 0 0 0.2386 1 18349 18349 0.0082765 0 1 + 41016 20221 27296 27313 40403 40403 0.07891387148549711 SERLLRELY 9 Unmodified _SERLLRELY_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2513427734375 2 589.830037 1177.64552 0.13795 8.1368E-05 -0.081327 -4.7969E-05 0.056626 3.3399E-05 589.8299717961949 92.384 0.62187 92.384 92.056 92.678 0 46 17 3 0 0 0 0.081606 1 18051 18051 73.196 57.349 1 9927200 41017 26528 27297 27314 40404 40404 0.06380488426111697 SERLLRELY 9 Unmodified _SERLLRELY_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2581787109375 2 589.830037 1177.64552 0.49168 0.00029 -0.2442 -0.00014404 0.24747 0.00014597 589.8297992222665 96.246 0.67663 92.196 91.828 92.505 -4.0496 55 19 4 0 0 0 0.01743 2 18899 18837;18899 94.909 54.959 1 9242100 41018 26528 27297 27314 40405;40406 40406 0.06380488426111697 SERLLRELY 9 Unmodified _SERLLRELY_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2620849609375 2 589.830037 1177.64552 0.5233 0.00030866 -0.33769 -0.00019918 0.1856 0.00010947 589.8298675355453 96.321 0.69428 92.086 91.743 92.437 -4.2348 49 19 3 0 0 0 0.01743 2 18407 18336;18407 94.909 54.959 1 8082200 41019 26528 27297 27314 40407;40408 40408 0.06380488426111697 SERLLRELY 9 Unmodified _SERLLRELY_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 589.830037 1177.64552 -0.01727 -1.0187E-05 0.23521 0.00013873 0.21794 0.00012855 589.830143568452 96.078 0.79366 92.197 91.785 92.578 -3.881 -0.019047 0.00042655 NaN 94.909 52 22 3 NaN NaN NaN NaN 0 NaN NaN 0 8664400 41020 26528 27297 27314 0.06380488426111697 SERLYLHSL 9 Unmodified _SERLYLHSL_ 0 0 0 REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 373.1138610839844 3 373.204862 1116.59276 -0.79385 -0.00029627 0.91253 0.00034056 0.11868 4.4292E-05 373.2052268057731 45.07 0.69557 42.322 42.1 42.796 -2.7475 31 19 2 0 0 0 0.88054 1 8200 8200 2.2828 0 1 823840 + 41021 23057 27298 27315 40409 40409 0.03912530363299993 SERLYLHSL 9 Unmodified _SERLYLHSL_ 0 0 0 REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 373.204862 1116.59276 -0.24383 -9.0999E-05 0.36207 0.00013512 0.11824 4.4126E-05 373.2049780554598 45.094 0.53976 42.304 42.095 42.635 -2.79 0.011903 -0.00011089 NaN 2.2828 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 982140 + 41022 23057 27298 27315 0.03912530363299993 SERLYLHSL 9 Unmodified _SERLYLHSL_ 0 0 0 REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 373.204862 1116.59276 -0.021795 -8.1339E-06 0.24045 8.9739E-05 0.21866 8.1605E-05 373.20500781156096 45.116 0.81597 42.25 41.877 42.693 -2.8653 -0.041952 -0.00024705 NaN 2.2828 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1177600 + 41023 23057 27298 27315 0.03912530363299993 SERLYRELY 9 Unmodified _SERLYRELY_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.11376953125 3 410.215539 1227.62479 -0.3289 -0.00013492 0.46814 0.00019204 0.13924 5.7118E-05 410.21572504884085 19.488 0.44817 18.163 17.968 18.416 -1.3251 38 12 5 0 0 0 0.78802 1 2951 2951 2.2828 0.5405 1 15102000 41024 6829 27299 27316 40410 40410 0.020078980464404594 SERLYRELY 9 Unmodified _SERLYRELY_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 410.215539 1227.62479 -0.03554 -1.4579E-05 -0.10361 -4.2503E-05 -0.13915 -5.7082E-05 410.2156040775178 18.085 0.55939 18.085 17.878 18.437 0 -0.085204 -0.00040674 NaN 2.2828 37 15 5 NaN NaN NaN NaN 0 NaN NaN 0 10065000 41025 6829 27299 27316 0.020078980464404594 SERLYRELY 9 Unmodified _SERLYRELY_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 410.215539 1227.62479 -0.016736 -6.8654E-06 0.10009 4.1059E-05 0.083355 3.4194E-05 410.2155594897862 19.658 0.4524 18.262 18.029 18.481 -1.3966 0.09187 -0.00015606 NaN 2.2828 38 12 4 NaN NaN NaN NaN 0 NaN NaN 0 15111000 41026 6829 27299 27316 0.020078980464404594 SERPGPPQ 8 Unmodified _SERPGPPQ_ 0 0 0 ENST00000462116.5_1_1:155032691-155033592:+|nuORF;ENST00000498481.6_1_1:155030770-155034829:+|nuORF;nc|ENSG00000221986|A2RUH7-2|MYBPHL;nc|ENSG00000143537|Q13444-11|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;ADAM15|p.P770Lfs*35|1|0.45|ENSG00000143537|chr1:155061440-155061440|C/-|frameshift_variant;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15 ENST00000462116.5_1_1:155032691-155033592:+|nuORF ENST00000462116.5_1_1:155032691-155033592:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 436.2245788574219 2 434.219591 866.42463 -0.32198 -0.00013981 0.18047 7.8363E-05 -0.14151 -6.1447E-05 434.2196637871789 19.865 2.274 18.54 17.721 19.995 -1.3251 155 64 5 0 0 0 8448 1 3060 3060 0.62683 0 1 110220000 41027 52 27300 27317 40411 40411 -0.013925318305155088 SERPGPPQ 8 Unmodified _SERPGPPQ_ 0 0 0 ENST00000462116.5_1_1:155032691-155033592:+|nuORF;ENST00000498481.6_1_1:155030770-155034829:+|nuORF;nc|ENSG00000221986|A2RUH7-2|MYBPHL;nc|ENSG00000143537|Q13444-11|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;ADAM15|p.P770Lfs*35|1|0.45|ENSG00000143537|chr1:155061440-155061440|C/-|frameshift_variant;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15 ENST00000462116.5_1_1:155032691-155033592:+|nuORF ENST00000462116.5_1_1:155032691-155033592:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 434.219591 866.42463 0.097633 4.2394E-05 -0.10957 -4.7578E-05 -0.011939 -5.1842E-06 434.2195884306879 18.518 2.7958 18.518 17.517 20.313 0 -0.03473 -7.4453E-05 NaN 0.62683 193 79 5 NaN NaN NaN NaN 0 NaN NaN 0 177000000 41028 52 27300 27317 -0.013925318305155088 SERPGPPQ 8 Unmodified _SERPGPPQ_ 0 0 0 ENST00000462116.5_1_1:155032691-155033592:+|nuORF;ENST00000498481.6_1_1:155030770-155034829:+|nuORF;nc|ENSG00000221986|A2RUH7-2|MYBPHL;nc|ENSG00000143537|Q13444-11|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;ADAM15|p.P770Lfs*35|1|0.45|ENSG00000143537|chr1:155061440-155061440|C/-|frameshift_variant;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15 ENST00000462116.5_1_1:155032691-155033592:+|nuORF ENST00000462116.5_1_1:155032691-155033592:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 434.219591 866.42463 0.07448 3.2341E-05 -0.16665 -7.2364E-05 -0.092174 -4.0024E-05 434.21953394450867 19.998 1.9334 18.601 17.741 19.674 -1.3966 0.048141 -0.00012402 NaN 0.62683 161 54 5 NaN NaN NaN NaN 0 NaN NaN 0 142840000 41029 52 27300 27317 -0.013925318305155088 SERSQLGLY 9 Unmodified _SERSQLGLY_ 0 0 0 ENST00000296786.7_1_5:158712508-158712598:+|nuORF ENST00000296786.7_1_5:158712508-158712598:+|nuORF ENST00000296786.7_1_5:158712508-158712598:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.07122802734375 3 351.517218 1051.52982 0.22426 7.8831E-05 -0.14627 -5.1416E-05 0.077989 2.7414E-05 351.51708983004823 33.546 0.48428 31.4 31.149 31.634 -2.1468 32 13 3 0 0 0 0.8825 1 5883 5883 2.7352 1.6637 1 1954200 41030 8515 27301 27318 40412 40412 0.006119645752505676 SERSQLGLY 9 Unmodified _SERSQLGLY_ 0 0 0 ENST00000296786.7_1_5:158712508-158712598:+|nuORF ENST00000296786.7_1_5:158712508-158712598:+|nuORF ENST00000296786.7_1_5:158712508-158712598:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 351.517218 1051.52982 -0.27423 -9.6397E-05 0.303 0.00010651 0.028772 1.0114E-05 351.5173620117312 31.318 0.45498 31.318 31.04 31.495 0 -0.044427 0.00012327 NaN 2.7352 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1932600 41031 8515 27301 27318 0.006119645752505676 SERSQLGLY 9 Unmodified _SERSQLGLY_ 0 0 0 ENST00000296786.7_1_5:158712508-158712598:+|nuORF ENST00000296786.7_1_5:158712508-158712598:+|nuORF ENST00000296786.7_1_5:158712508-158712598:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 351.517218 1051.52982 -0.30871 -0.00010852 0.25683 9.0279E-05 -0.051883 -1.8238E-05 351.51729441024264 33.691 0.4487 31.374 31.114 31.563 -2.3175 0.011563 7.457E-05 NaN 2.7352 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1984400 41032 8515 27301 27318 0.006119645752505676 SERSQLGLY 9 Unmodified _SERSQLGLY_ 0 0 0 ENST00000296786.7_1_5:158712508-158712598:+|nuORF ENST00000296786.7_1_5:158712508-158712598:+|nuORF ENST00000296786.7_1_5:158712508-158712598:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 351.517218 1051.52982 -0.28575 -0.00010045 0.32658 0.0001148 0.040834 1.4354E-05 351.5172942264651 33.573 0.48278 31.357 31.113 31.596 -2.2158 -0.0046259 0.00014813 NaN 2.7352 33 13 4 NaN NaN NaN NaN 0 NaN NaN 0 1786500 41033 8515 27301 27318 0.006119645752505676 SERVPEDP 8 Unmodified _SERVPEDP_ 0 0 0 ENST00000335142.5_1_14:56043911-56046785:-|nuORF;ENST00000554558.5_1_14:55966046-56046785:-|nuORF ENST00000335142.5_1_14:56043911-56046785:-|nuORF ENST00000335142.5_1_14:56043911-56046785:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2462463378906 2 464.722164 927.429775 -0.16199 -7.5278E-05 2.2732 0.0010564 2.1112 0.00098114 464.723600490513 58.906 0.5245 58.906 58.617 59.141 0 18 14 2 0 0 0 0.54916 1 11300 11300 25.399 0 1 761990 41034 8798 27302 27319 40413 40413 -0.036842727585622015 SERVTIEHA 9 Unmodified _SERVTIEHA_ 0 0 0 nc|ENSG00000100650|Q13243-2|SRSF5;ENST00000554465.5_1_14:70234873-70235638:+|nuORF;SRSF5|p.K167*|1|0.04|ENSG00000100650|chr14:69771052-69771053|-/T|frameshift_variant;SRSF5|p.K167Nfs*13|1|0.03|ENSG00000100650|chr14:69771053-69771054|-/ACAC|frameshift_variant;nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5 nc|ENSG00000100650|Q13243-2|SRSF5 nc|ENSG00000100650|Q13243-2|SRSF5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2723999023438 2 521.269813 1040.52507 -0.5737 -0.00029905 0.41508 0.00021637 -0.15862 -8.2685E-05 521.2701645861871 26.35 0.41412 24.716 24.477 24.891 -1.6347 23 11 4 0 0 0 0.68435 1 4359 4359 7.2892 0 1 975520 41035 2002 27303 27320 40414 40414 0.006430804324736528 SERWKTMSA 9 Unmodified _SERWKTMSA_ 0 0 0 ENSG00000164104|ENST00000296503|HMGB2;ENST00000511316.1_1_4:174254218-174255486:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;HMGB1|p.K44T|1|0.44|ENSG00000189403|chr13:30463550-30463550|T/G|missense_variant ENSG00000164104|ENST00000296503|HMGB2 ENSG00000164104|ENST00000296503|HMGB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7720947265625 2 548.266216 1094.51788 -0.1557 -8.5366E-05 0.37468 0.00020542 0.21897 0.00012006 548.2664779447252 38.322 0.79984 35.853 35.438 36.238 -2.4688 53 22 3 0 0 0 0.19141 1 7081 7081 34.932 20.094 1 10181000 41036 5508 27304 27321 40415 40415 -0.025599754396125718 SERWKTMSA 9 Unmodified _SERWKTMSA_ 0 0 0 ENSG00000164104|ENST00000296503|HMGB2;ENST00000511316.1_1_4:174254218-174255486:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;HMGB1|p.K44T|1|0.44|ENSG00000189403|chr13:30463550-30463550|T/G|missense_variant ENSG00000164104|ENST00000296503|HMGB2 ENSG00000164104|ENST00000296503|HMGB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7713623046875 2 548.266216 1094.51788 0.092497 5.0713E-05 0.14905 8.1717E-05 0.24154 0.00013243 548.266277162317 38.073 0.73841 35.631 35.315 36.054 -2.4419 50 20 3 0 0 0 0.068106 1 6778 6778 74.2 36.024 1 8555900 41037 5508 27304 27321 40416 40416 -0.025599754396125718 SERWKTMSA 9 Unmodified _SERWKTMSA_ 0 0 0 ENSG00000164104|ENST00000296503|HMGB2;ENST00000511316.1_1_4:174254218-174255486:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;HMGB1|p.K44T|1|0.44|ENSG00000189403|chr13:30463550-30463550|T/G|missense_variant ENSG00000164104|ENST00000296503|HMGB2 ENSG00000164104|ENST00000296503|HMGB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.771484375 2 548.266216 1094.51788 0.27467 0.00015059 -0.17316 -9.4936E-05 0.10151 5.5655E-05 548.2662231583546 38.102 0.83176 35.753 35.316 36.147 -2.3488 55 23 3 0 0 0 0.13797 1 6762 6762 35.612 28.003 1 6026900 41038 5508 27304 27321 40417 40417 -0.025599754396125718 SERYAAVL 8 Unmodified _SERYAAVL_ 0 0 0 ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 455.2213439941406 2 454.745442 907.476331 -0.060317 -2.7429E-05 0.70254 0.00031948 0.64222 0.00029205 454.74553945926925 63.564 0.72898 63.564 63.086 63.815 0 34 20 2 0 0 0 0.8748 1 12131 12131 1.4551 1.2036 1 1580900 41039 6723 27305 27322 40418 40418 0.01889211863363016 SERYAAVL 8 Unmodified _SERYAAVL_ 0 0 0 ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 454.745442 907.476331 -0.11848 -5.3877E-05 0.74529 0.00033892 0.62681 0.00028504 454.74568536454825 66.352 0.72769 63.305 63.019 63.747 -3.047 -0.030146 6.4369E-05 NaN 1.4551 33 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1332500 41040 6723 27305 27322 0.01889211863363016 SERYAAVL 8 Unmodified _SERYAAVL_ 0 0 0 ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 454.745442 907.476331 0.2237 0.00010173 0.49987 0.00022731 0.72357 0.00032904 454.7454244041655 66.766 0.69977 63.27 62.832 63.531 -3.4965 -0.064886 -0.00015884 NaN 1.4551 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1077800 41041 6723 27305 27322 0.01889211863363016 SERYAAVL 8 Unmodified _SERYAAVL_ 0 0 0 ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 454.745442 907.476331 0.28307 0.00012873 0.72285 0.00032871 1.0059 0.00045744 454.74535382077886 66.528 0.93581 63.201 62.747 63.683 -3.3268 -0.13388 4.396E-05 NaN 1.4551 43 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1124400 41042 6723 27305 27322 0.01889211863363016 SERYQEKLQ 9 Unmodified _SERYQEKLQ_ 0 0 0 REV__PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant REV__PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2675170898438 2 590.801477 1179.5884 0.70244 0.000415 -0.59651 -0.00035242 0.10593 6.2585E-05 590.8010805686805 46.95 0.46119 46.95 46.661 47.123 0 20 12 2 0 0 0 0.8606 1 8820 8820 10.8 2.8894 1 1720700 + 41043 15659 27306 27323 40419 40419 0.005790211497242126 SESAVFHGF 9 Unmodified _SESAVFHGF_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2674865722656 2 490.727249 979.439946 0.059748 2.932E-05 0.36968 0.00018141 0.42943 0.00021073 490.7272781119954 107.14 0.68983 102.72 102.3 102.99 -4.4121 29 19 2 0 0 0 0.10143 1 20580 20580 46.921 23.772 1 918960 41044 998 27307 27324 40420 40420 -0.05059665033320471 SESAVFHGF 9 Unmodified _SESAVFHGF_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2585144042969 2 490.727249 979.439946 0.47623 0.0002337 -0.060797 -2.9835E-05 0.41543 0.00020386 490.72707946870133 106.96 0.89546 102.82 102.25 103.15 -4.135 37 25 2 0 0 0 0.14543 1 20565 20565 46.921 23.772 1 1210300 41045 998 27307 27324 40421 40421 -0.05059665033320471 SESCNKNEGDP 11 Unmodified _SESCNKNEGDP_ 0 0 0 ENSG00000101850|ENST00000467482|GPR143 ENSG00000101850|ENST00000467482|GPR143 ENSG00000101850|ENST00000467482|GPR143 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.263916015625 2 590.232767 1178.45098 0.36869 0.00021761 0.56255 0.00033204 0.93124 0.00054965 590.2329443572081 43.369 1.3486 40.603 40.146 41.495 -2.7661 67 37 3 0 0 0 0.74417 1 7968 7968 8.7454 2.0222 1 11741000 41046 2089 27308 27325 40422 40422 -0.1311067551200722 SESCVLGLV 9 Unmodified _SESCVLGLV_ 0 0 0 ENST00000479638.5_1_6:160210956-160211809:+|nuORF ENST00000479638.5_1_6:160210956-160211809:+|nuORF ENST00000479638.5_1_6:160210956-160211809:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75970458984375 2 453.733686 905.452819 -0.16636 -7.5482E-05 -0.34606 -0.00015702 -0.51241 -0.0002325 453.7336329662598 86.718 0.63651 82.991 82.728 83.365 -3.727 30 17 2 0 0 0 0.74655 1 16973 16973 21.747 4.8044 1 3440900 41047 10346 27309 27326 40423 40423 -0.003689699654501055 SESDKAITP 9 Unmodified _SESDKAITP_ 0 0 0 ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 ENSG00000131016|ENST00000402676|AKAP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 948.4696044921875 1 947.468017 946.460741 1.1054 0.0010473 -0.62158 -0.00058893 0.48381 0.00045839 947.4673132687227 26.993 0.31271 25.211 24.96 25.272 -1.7821 10 8 2 0 0 0 0.46882 1 4774 4774 21.537 7.6309 1 546870 41048 3654 27310 27327 40424 40424 -0.014631194443268214 SESDRASLP 9 Unmodified _SESDRASLP_ 0 0 0 ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENSG00000141452|ENST00000269221|RMC1 ENST00000589215.5_1_18:21087981-21111645:+|nuORF ENST00000589215.5_1_18:21087981-21111645:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23321533203125 2 481.232896 960.451239 0.089284 4.2967E-05 -0.10273 -4.9435E-05 -0.013442 -6.4687E-06 481.2330550048895 38.186 0.95617 35.744 35.38 36.336 -2.4419 37 26 2 0 0 0 0.36931 1 6838 6838 27.629 2.2295 1 1487200 41049 4370 27311 27328 40425 40425 -0.030568877298492225 SESDRASLP 9 Unmodified _SESDRASLP_ 0 0 0 ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENSG00000141452|ENST00000269221|RMC1 ENST00000589215.5_1_18:21087981-21111645:+|nuORF ENST00000589215.5_1_18:21087981-21111645:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23291015625 2 481.232896 960.451239 0.12747 6.1343E-05 -0.012197 -5.8698E-06 0.11527 5.5473E-05 481.2331582178105 38.155 0.79995 35.75 35.569 36.369 -2.4049 36 22 2 0 0 0 0.30618 1 6821 6821 31.268 3.6395 1 1740400 41050 4370 27311 27328 40426 40426 -0.030568877298492225 SESEKQWKA 9 Unmodified _SESEKQWKA_ 0 0 0 nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7721557617188 2 546.769645 1091.52474 0.28975 0.00015843 -0.929 -0.00050795 -0.63924 -0.00034952 546.7691499752116 19.179 1.522 19.179 18.754 20.276 0 107 43 6 0 0 0 0.051332 1 3113 3113 70.332 34.205 1 188710000 41051 7827 27312 27329 40427 40427 -0.017363392873676275 SESEKQWKA 9 Unmodified _SESEKQWKA_ 0 0 0 nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7726440429688 2 546.769645 1091.52474 0.53189 0.00029082 -0.84272 -0.00046077 -0.31083 -0.00016995 546.7691914403481 20.663 0.63707 19.266 19.072 19.709 -1.3966 64 17 5 0 0 0 0.037776 3 3448 3448;3450;3497 89.193 58.49 1 151840000 41052 7827 27312 27329 40428;40429;40430 40428 -0.017363392873676275 SESEKQWKA 9 Unmodified _SESEKQWKA_ 0 0 0 nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77197265625 2 546.769645 1091.52474 -0.21536 -0.00011775 -0.42773 -0.00023387 -0.64308 -0.00035162 546.769414008103 20.535 0.69652 19.151 18.952 19.649 -1.3847 72 19 5 0 0 0 0.031786 2 3191 3191;3233 79.596 35.738 1 123070000 41053 7827 27312 27329 40431;40432 40431 -0.017363392873676275 SESEKQWKA 9 Unmodified _SESEKQWKA_ 0 0 0 nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7720947265625 2 546.769645 1091.52474 -0.72986 -0.00039907 0.1596 8.7267E-05 -0.57026 -0.0003118 546.7697253918928 20.783 0.76003 19.062 18.873 19.633 -1.7211 79 21 5 0 0 0 0.053942 2 3257 3204;3257 69.105 47.358 1 91853000 41054 7827 27312 27329 40433;40434 40434 -0.017363392873676275 SESEPLAH 8 Unmodified _SESEPLAH_ 0 0 0 REV__nc|ENSG00000165509|Q8TD91-2|MAGEC3 REV__nc|ENSG00000165509|Q8TD91-2|MAGEC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21978759765625 2 435.203607 868.392661 0.30028 0.00013068 -0.36353 -0.00015821 -0.063255 -2.7529E-05 435.2033406909496 21.228 0.56558 19.754 19.56 20.125 -1.4742 47 15 5 0 0 0 0.76728 1 3556 3556 5.7604 0 1 12091000 + 41055 17777 27313 27330 40435 40435 -0.04679944304336914 SESEPLAH 8 Unmodified _SESEPLAH_ 0 0 0 REV__nc|ENSG00000165509|Q8TD91-2|MAGEC3 REV__nc|ENSG00000165509|Q8TD91-2|MAGEC3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 435.203607 868.392661 0.12427 5.4081E-05 -0.018706 -8.1411E-06 0.10556 4.594E-05 435.2034828839862 19.908 0.79966 19.908 19.623 20.423 0 0.088579 6.1487E-05 NaN 5.7604 61 22 4 NaN NaN NaN NaN 0 NaN NaN 0 16901000 + 41056 17777 27313 27330 -0.04679944304336914 SESEPLAH 8 Unmodified _SESEPLAH_ 0 0 0 REV__nc|ENSG00000165509|Q8TD91-2|MAGEC3 REV__nc|ENSG00000165509|Q8TD91-2|MAGEC3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 435.203607 868.392661 0.30028 0.00013068 -0.36353 -0.00015821 -0.063255 -2.7529E-05 435.2033406909496 21.228 0.56558 19.754 19.56 20.125 -1.4742 -0.065438 -0.00023865 NaN 5.7604 47 15 5 NaN NaN NaN NaN 0 NaN NaN 0 12091000 + 41057 17777 27313 27330 -0.04679944304336914 SESEPLAH 8 Unmodified _SESEPLAH_ 0 0 0 REV__nc|ENSG00000165509|Q8TD91-2|MAGEC3 REV__nc|ENSG00000165509|Q8TD91-2|MAGEC3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 435.203607 868.392661 -0.23607 -0.00010274 0.14175 6.1688E-05 -0.09432 -4.1048E-05 435.2035377768111 21.181 0.49395 19.797 19.578 20.072 -1.3847 -0.023141 0.00020115 NaN 5.7604 41 13 4 NaN NaN NaN NaN 0 NaN NaN 0 8924400 + 41058 17777 27313 27330 -0.04679944304336914 SESFQDMSL 9 Unmodified _SESFQDMSL_ 0 0 0 ENST00000515578.5_1_4:420284-429666:-|nuORF ENST00000515578.5_1_4:420284-429666:-|nuORF ENST00000515578.5_1_4:420284-429666:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2590942382812 2 522.221139 1042.42773 -0.57555 -0.00030057 1.4197 0.00074139 0.84414 0.00044083 522.2217084131611 151.44 0.56277 146.2 145.9 146.46 -5.2365 23 15 2 0 0 0 0.44932 1 29323 29323 22.736 2.2827 1 4168200 41059 10789 27314 27331 40436 40436 -0.09179069558672381 SESFSWDF 8 Unmodified _SESFSWDF_ 0 0 0 nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR;TICRR|p.P1378Lfs*50|1|0.23|ENSG00000140534|chr15:89624439-89624439|C/-|frameshift_variant;TICRR|p.G624Efs*3|1|0.29|ENSG00000140534|chr15:89595580-89595583|AGGA/-|frameshift_variant nc|ENSG00000140534|Q7Z2Z1-2|TICRR nc|ENSG00000140534|Q7Z2Z1-2|TICRR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.0599670410156 3 335.471385 1003.39233 -0.17277 -5.796E-05 0.05969 2.0024E-05 -0.11308 -3.7936E-05 335.4714257366937 29.762 0.48799 27.688 27.413 27.901 -2.0743 19 13 2 0 0 0 1.0277 1 5023 5023 0 0 1 677060 41060 4309 27315 27332 40437 40437 -0.10923364024176863 SESFSWDF 8 Unmodified _SESFSWDF_ 0 0 0 nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR;TICRR|p.P1378Lfs*50|1|0.23|ENSG00000140534|chr15:89624439-89624439|C/-|frameshift_variant;TICRR|p.G624Efs*3|1|0.29|ENSG00000140534|chr15:89595580-89595583|AGGA/-|frameshift_variant nc|ENSG00000140534|Q7Z2Z1-2|TICRR nc|ENSG00000140534|Q7Z2Z1-2|TICRR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 335.471385 1003.39233 0.30548 0.00010248 -0.30783 -0.00010327 -0.0023505 -7.8852E-07 335.47119518301014 29.691 0.34915 27.574 27.386 27.735 -2.1167 -0.065632 -8.4929E-05 NaN 0 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 716330 41061 4309 27315 27332 -0.10923364024176863 SESFSWDF 8 Unmodified _SESFSWDF_ 0 0 0 nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR;TICRR|p.P1378Lfs*50|1|0.23|ENSG00000140534|chr15:89624439-89624439|C/-|frameshift_variant;TICRR|p.G624Efs*3|1|0.29|ENSG00000140534|chr15:89595580-89595583|AGGA/-|frameshift_variant nc|ENSG00000140534|Q7Z2Z1-2|TICRR nc|ENSG00000140534|Q7Z2Z1-2|TICRR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 335.471385 1003.39233 0.35179 0.00011802 -0.39348 -0.000132 -0.041686 -1.3985E-05 335.4712176088625 29.55 0.48921 27.657 27.439 27.928 -1.8928 0.017208 -0.00017113 NaN 0 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1596900 41062 4309 27315 27332 -0.10923364024176863 SESGHSQPGLY 11 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SESGHSQPGLY_ 1 0 0 ENST00000598886.1_1_19:44252096-44254893:-|nuORF;ENST00000595700.5_1_19:44242246-44254893:-|nuORF;SMG9|p.H366Tfs*2|1|0.22|ENSG00000105771|chr19:43734395-43734395|G/-|frameshift_variant;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENSG00000105771|ENST00000270066|SMG9 ENST00000598886.1_1_19:44252096-44254893:-|nuORF ENST00000598886.1_1_19:44252096-44254893:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2799072265625 2 602.267467 1202.52038 0.31181 0.00018779 0.22393 0.00013487 0.53574 0.00032266 602.2676106798476 54.782 0.91103 54.782 54.282 55.193 0 50 25 3 0 0 0 0.27844 1 10436 10436 61.602 33.115 1 2111400 41063 2341 27316 27333 40438 40438 -0.07277848500939399 SESGHSQPGLY 11 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SESGHSQPGLY_ 1 0 0 ENST00000598886.1_1_19:44252096-44254893:-|nuORF;ENST00000595700.5_1_19:44242246-44254893:-|nuORF;SMG9|p.H366Tfs*2|1|0.22|ENSG00000105771|chr19:43734395-43734395|G/-|frameshift_variant;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENSG00000105771|ENST00000270066|SMG9 ENST00000598886.1_1_19:44252096-44254893:-|nuORF ENST00000598886.1_1_19:44252096-44254893:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2875366210938 2 602.267467 1202.52038 NaN NaN NaN NaN NaN NaN NaN 58.357 1 55.106 54.606 55.606 -3.2517 0 0 0 4.4919E-08 1 10843 10843 103.42 62.971 1 41064 2341 27316 27333 40439 40439 -0.07277848500939399 SESGHSQPGLY 11 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SESGHSQPGLY_ 1 0 0 ENST00000598886.1_1_19:44252096-44254893:-|nuORF;ENST00000595700.5_1_19:44242246-44254893:-|nuORF;SMG9|p.H366Tfs*2|1|0.22|ENSG00000105771|chr19:43734395-43734395|G/-|frameshift_variant;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENSG00000105771|ENST00000270066|SMG9 ENST00000598886.1_1_19:44252096-44254893:-|nuORF ENST00000598886.1_1_19:44252096-44254893:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2922973632812 2 602.267467 1202.52038 0.16467 9.9177E-05 0.47221 0.0002844 0.63688 0.00038357 602.2676777451934 58.381 0.96878 55.175 54.677 55.646 -3.2052 58 27 3 0 0 0 0.013136 2 10891 10891;10933 90.135 64.736 1 1906300 41065 2341 27316 27333 40440;40441 40440 -0.07277848500939399 SESKSKSPPP 10 Unmodified _SESKSKSPPP_ 0 0 0 nc|ENSG00000111877|Q9NXL9-4|MCM9;ENSG00000111877|ENST00000619706|MCM9 nc|ENSG00000111877|Q9NXL9-4|MCM9 nc|ENSG00000111877|Q9NXL9-4|MCM9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.271728515625 2 522.272021 1042.52949 0.4378 0.00022865 0.83359 0.00043536 1.2714 0.00066401 522.2724026544236 42.99 0.80316 42.99 42.491 43.295 0 35 22 2 0 0 0 0.70357 1 7989 7989 10.824 0.75 1 1394700 41066 2655 27317 27334 40442 40442 0.009925448553985916 SESKVCLGP 9 Unmodified _SESKVCLGP_ 0 0 0 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2400817871094 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 23.308 1 21.855 21.355 22.355 -1.4535 0 0 0 0.21844 1 3756 3756 18.146 1.9972 1 + 41067 19843 27318 27335 40443 40443 -0.014418541082136471 SESKVCLGP 9 Unmodified _SESKVCLGP_ 0 0 0 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23101806640625 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 23.459 1 22.006 21.506 22.506 -1.4535 0 0 0 0.23508 1 3785 3785 10.074 0.6908 1 + 41068 19843 27318 27335 40444 40444 -0.014418541082136471 SESKVCLGP 9 Unmodified _SESKVCLGP_ 0 0 0 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2314758300781 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 23.457 1 21.668 21.168 22.168 -1.7886 0 0 0 0.18705 1 3772 3772 25.399 7.253 1 + 41069 19843 27318 27335 40445 40445 -0.014418541082136471 SESKVCLGP 9 Unmodified _SESKVCLGP_ 0 0 0 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23138427734375 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 23.665 1 21.876 21.376 22.376 -1.7886 0 0 0 0.23508 1 3816 3816 10.074 0.6908 1 + 41070 19843 27318 27335 40446 40446 -0.014418541082136471 SESKVCLGP 9 Unmodified _SESKVCLGP_ 0 0 0 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2480773925781 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 23.724 1 21.935 21.435 22.435 -1.7886 0 0 0 0.22962 1 3830 3830 14.838 3.198 1 + 41071 19843 27318 27335 40447 40447 -0.014418541082136471 SESLDSTMFDE 11 Unmodified _SESLDSTMFDE_ 0 0 0 REV__ENSG00000205856|ENST00000382097|C22orf42 REV__ENSG00000205856|ENST00000382097|C22orf42 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7489013671875 2 630.750458 1259.48636 NaN NaN NaN NaN NaN NaN NaN 24.292 1 24.292 23.792 24.792 0 0 0 0 0.23379 1 4179 4179 5.2969 0 1 + 41072 19603 27319 27336 40448 40448 -0.1330005777488168 SESLLLWN 8 Unmodified _SESLLLWN_ 0 0 0 ENST00000072516.7_2_3:190231855-190282134:+|nuORF;ENST00000422625.5_1_3:190231889-190282131:+|nuORF;ENST00000447382.5_2_3:190231879-190282131:+|nuORF ENST00000072516.7_2_3:190231855-190282134:+|nuORF ENST00000072516.7_2_3:190231855-190282134:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25360107421875 2 481.2531 960.491647 -0.40587 -0.00019532 1.1188 0.00053844 0.71296 0.00034312 481.2535774783836 109.43 0.70076 105.05 104.61 105.31 -4.3776 28 19 2 0 0 0 0.66265 1 21535 21535 18.135 0 1 1467500 41073 8071 27320 27337 40449 40449 0.009820786605587273 SESLLLWN 8 Unmodified _SESLLLWN_ 0 0 0 ENST00000072516.7_2_3:190231855-190282134:+|nuORF;ENST00000422625.5_1_3:190231889-190282131:+|nuORF;ENST00000447382.5_2_3:190231879-190282131:+|nuORF ENST00000072516.7_2_3:190231855-190282134:+|nuORF ENST00000072516.7_2_3:190231855-190282134:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25384521484375 2 481.2531 960.491647 0.59517 0.00028643 -0.17498 -8.4212E-05 0.42019 0.00020222 481.252948308135 109.18 0.70125 105 104.7 105.4 -4.1826 30 19 2 0 0 0 0.66265 1 21023 21023 18.135 0 1 1173300 41074 8071 27320 27337 40450 40450 0.009820786605587273 SESLLYHL 8 Unmodified _SESLLYHL_ 0 0 0 ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;ANAPC4|p.R419Sfs*21|1|0.18|ENSG00000053900|chr4:25403004-25403005|-/T|frameshift_variant;nc|ENSG00000053900|Q9UJX5-2|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 ENSG00000053900|ENST00000315368|ANAPC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2530212402344 2 481.2531 960.491647 -0.15687 -7.5492E-05 0.28137 0.00013541 0.1245 5.9918E-05 481.2532178760344 109.54 0.66756 105.09 104.71 105.38 -4.4518 30 18 2 0 0 0 0.70613 1 21011 21011 13.508 0 1 1373100 41075 1259 27321 27338 40451 40451 0.00982078660570096 SESLPGPGA 9 Unmodified _SESLPGPGA_ 0 0 0 ENST00000369385.5_1_1:149814728-149815097:+|nuORF;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000261716|Q6DN03|H2BC20P ENST00000369385.5_1_1:149814728-149815097:+|nuORF ENST00000369385.5_1_1:149814728-149815097:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3582763671875 1 814.394124 813.386848 0.84205 0.00068576 -0.378 -0.00030784 0.46405 0.00037792 814.3936926806284 47.16 0.66916 47.16 46.836 47.505 0 29 18 2 0 0 0 0.52414 1 8928 8928 18.135 5.6034 1 1976400 41076 9118 27322 27339 40452 40452 -0.027310428159807998 SESLPGPGA 9 Unmodified _SESLPGPGA_ 0 0 0 ENST00000369385.5_1_1:149814728-149815097:+|nuORF;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000261716|Q6DN03|H2BC20P ENST00000369385.5_1_1:149814728-149815097:+|nuORF ENST00000369385.5_1_1:149814728-149815097:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 814.394124 813.386848 0.32396 0.00026383 -0.033851 -2.7568E-05 0.29011 0.00023627 814.3940735515348 50.222 0.66927 47.341 47.011 47.68 -2.8811 0.048017 -5.3277E-05 NaN 18.135 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2791800 41077 9118 27322 27339 -0.027310428159807998 SESLPGPGA 9 Unmodified _SESLPGPGA_ 0 0 0 ENST00000369385.5_1_1:149814728-149815097:+|nuORF;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000261716|Q6DN03|H2BC20P ENST00000369385.5_1_1:149814728-149815097:+|nuORF ENST00000369385.5_1_1:149814728-149815097:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 814.394124 813.386848 0.27232 0.00022178 0.11308 9.2095E-05 0.3854 0.00031387 814.3941452679161 50.375 0.70731 47.33 46.924 47.631 -3.0453 0.036295 6.6386E-05 NaN 18.135 36 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2824600 41078 9118 27322 27339 -0.027310428159807998 SESLPGPGA 9 Unmodified _SESLPGPGA_ 0 0 0 ENST00000369385.5_1_1:149814728-149815097:+|nuORF;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000261716|Q6DN03|H2BC20P ENST00000369385.5_1_1:149814728-149815097:+|nuORF ENST00000369385.5_1_1:149814728-149815097:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 814.394124 813.386848 0.10811 8.8047E-05 0.25318 0.00020619 0.3613 0.00029424 814.3942878153695 50.349 0.74751 47.342 46.975 47.722 -3.0068 0.048732 0.00018048 NaN 18.135 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2367800 41079 9118 27322 27339 -0.027310428159807998 SESLRRWF 8 Unmodified _SESLRRWF_ 0 0 0 REV__RGL3|p.L196Wfs*60|1|0.18|ENSG00000205517|chr19:11415987-11415987|A/-|frameshift_variant REV__RGL3|p.L196Wfs*60|1|0.18|ENSG00000205517|chr19:11415987-11415987|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2835083007812 2 540.78289 1079.55123 0.30032 0.00016241 -1.3434 -0.00072647 -1.043 -0.00056406 541.2833127333049 73.651 0.13554 69.975 69.898 70.033 -3.6764 5 3 2 0 0 0 0.99494 1 13926 13926 4.756 0 1 497930 + 41080 24560 27323 27340 40453 40453 0.014633943946137151 SESMVESKF 9 Unmodified _SESMVESKF_ 0 0 0 ENSG00000102313|ENST00000218436|ITIH6 ENSG00000102313|ENST00000218436|ITIH6 ENSG00000102313|ENST00000218436|ITIH6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2780151367188 2 522.239332 1042.46411 0.50139 0.00026185 -0.85859 -0.00044839 -0.3572 -0.00018655 522.238932981515 81.613 0.55098 81.613 81.268 81.818 0 20 15 2 0 0 0 0.23744 1 15898 15898 52.268 0 1 4088300 41081 2124 27324 27341 40454 40454 -0.055421926619601436 SESNQYNQQY 10 Unmodified _SESNQYNQQY_ 0 0 0 REV__ENSG00000065978|ENST00000321358|YBX1 REV__ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7582397460938 2 630.760006 1259.50546 NaN NaN NaN NaN NaN NaN NaN 107.76 1 103.62 103.12 104.12 -4.135 0 0 0 0.22588 1 20729 20729 6.7232 3.4419 1 + 41082 14196 27325 27342 40455 40455 -0.11391340368936653 SESNTVRMY 9 Unmodified _SESNTVRMY_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7928466796875 2 543.747856 1085.48116 0.14459 7.8621E-05 0.26178 0.00014234 0.40637 0.00022096 543.7475391062231 48.136 0.36246 45.267 44.983 45.345 -2.869 22 9 3 0 0 0 0.42844 1 9063 9063 24.021 3.5669 1 1220900 41083 5053;26536 27326 27343 40456 40456 -0.05816272056154048 SESNTVRMY 9 Unmodified _SESNTVRMY_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7938232421875 2 543.747856 1085.48116 -2.293E-06 -1.2468E-09 0.50236 0.00027316 0.50236 0.00027316 543.7478574720387 48.14 0.34878 45.19 45.016 45.365 -2.9499 13 9 2 0 0 0 0.48644 1 8828 8828 20.454 0 1 927120 41084 5053;26536 27326 27343 40457 40457 -0.05816272056154048 SESPDHYLV 9 Unmodified _SESPDHYLV_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6784057617188 2 523.743096 1045.47164 0.24219 0.00012684 0.00024514 1.2839E-07 0.24243 0.00012697 523.7430062062842 73.955 0.73555 73.955 73.52 74.255 0 35 20 2 0 0 0 0.0277 1 14340 14340 74.423 62.928 1 3397900 41085 6002 27327 27344 40458 40458 -0.04927717070063409 SESPDHYLV 9 Unmodified _SESPDHYLV_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6903076171875 2 523.743096 1045.47164 -0.18876 -9.8863E-05 0.54206 0.0002839 0.35329 0.00018504 523.7433195596084 77.24 1.0167 73.777 73.235 74.252 -3.4633 58 28 3 0 0 0 0.0076257 1 15086 15086 109.63 73.585 1 4615700 41086 6002 27327 27344 40459 40459 -0.04927717070063409 SESPDHYLV 9 Unmodified _SESPDHYLV_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6838989257812 2 523.743096 1045.47164 -0.50975 -0.00026698 0.88198 0.00046193 0.37224 0.00019496 523.7435475751176 77.588 0.98412 73.821 73.472 74.457 -3.7664 55 27 3 0 0 0 0.57447 1 14782 14782 14.838 1.7958 1 2831100 41087 6002 27327 27344 40460 40460 -0.04927717070063409 SESPDHYLV 9 Unmodified _SESPDHYLV_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6819458007812 2 523.743096 1045.47164 0.12806 6.7072E-05 0.010733 5.6215E-06 0.1388 7.2693E-05 523.7430287912118 77.504 1.3326 73.845 73.327 74.66 -3.6588 60 37 2 0 0 0 0.0098628 1 14761 14761 104.8 70.697 1 3111300 41088 6002 27327 27344 40461 40461 -0.04927717070063409 SESPNGRIA 9 Unmodified _SESPNGRIA_ 0 0 0 nc|ENSG00000118961|Q9H6V9-4|LDAH;nc|ENSG00000118961|Q9H6V9-3|LDAH;ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH nc|ENSG00000118961|Q9H6V9-4|LDAH nc|ENSG00000118961|Q9H6V9-4|LDAH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2483215332031 2 465.735606 929.456658 -0.29364 -0.00013676 0.41611 0.0001938 0.12247 5.7039E-05 465.73572405392787 20.32 0.24932 18.935 18.777 19.027 -1.3847 12 6 2 0 0 0 0.47592 1 3159 3159 24.882 14.808 1 1332900 41089 3055 27328 27345 40462 40462 -0.010891641473790514 SESPNQLR 8 Unmodified _SESPNQLR_ 0 0 0 REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2483215332031 2 465.735606 929.456658 0.22797 0.00010617 -0.37513 -0.00017471 -0.14716 -6.8536E-05 465.7354074845405 20.412 0.31746 19.015 18.829 19.146 -1.3966 15 8 2 0 0 0 0.18686 1 3406 3406 70.716 2.6348 1 2682100 + 41090 13594 27329 27346 40463 40463 -0.010891641473790514 SESPNQLR 8 Unmodified _SESPNQLR_ 0 0 0 REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2501220703125 2 465.735606 929.456658 -0.84418 -0.00039317 0.84937 0.00039558 0.0051909 2.4176E-06 465.7359695612614 20.576 0.28053 18.855 18.695 18.975 -1.7211 12 7 2 0 0 0 0.88085 1 3175 3175 6.1918 0 1 859190 + 41091 13594 27329 27346 40464 40464 -0.010891641473790514 SESPNQLR 8 Unmodified _SESPNQLR_ 0 0 0 REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.735606 929.456658 0.076588 3.567E-05 0.75334 0.00035086 0.82993 0.00038653 465.73550489257804 19.039 0.51964 19.039 18.652 19.172 0 0.04249 0.00065973 NaN 70.716 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3586000 + 41092 13594 27329 27346 -0.010891641473790514 SESPSEIME 9 Unmodified _SESPSEIME_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.S242F|1|0.2|ENSG00000086758|chrX:53631451-53631451|G/A|missense_variant nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 504.7483215332031 2 504.713147 1007.41174 -0.16857 -8.5081E-05 1.4786 0.00074627 1.31 0.00066119 504.7138572759974 96.08 0.7316 91.889 91.579 92.31 -4.1911 45 20 3 0 0 0 0.54058 1 18303 18303 12.241 4.0851 1 4217000 41093 1701 27330 27347 40465 40465 -0.0916677579558609 SESPSEIME 9 Unmodified _SESPSEIME_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.S242F|1|0.2|ENSG00000086758|chrX:53631451-53631451|G/A|missense_variant nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 504.713147 1007.41174 0.0065115 3.2864E-06 1.3191 0.00066575 1.3256 0.00066904 504.7137310613651 91.783 0.73471 91.783 91.391 92.126 0 -0.10931 0.00017002 NaN 12.241 33 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2003400 41094 1701 27330 27347 -0.0916677579558609 SESPSEIME 9 Unmodified _SESPSEIME_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.S242F|1|0.2|ENSG00000086758|chrX:53631451-53631451|G/A|missense_variant nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 504.713147 1007.41174 -0.0042329 -2.1364E-06 0.81192 0.00040979 0.80769 0.00040765 504.7134643016654 96.009 0.61519 91.96 91.611 92.226 -4.0496 0.06697 -0.00034191 NaN 12.241 37 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2557100 41095 1701 27330 27347 -0.0916677579558609 SESPSEIME 9 Unmodified _SESPSEIME_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.S242F|1|0.2|ENSG00000086758|chrX:53631451-53631451|G/A|missense_variant nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 504.713147 1007.41174 -0.12299 -6.2073E-05 1.1503 0.00058059 1.0274 0.00051852 504.7136360386526 95.819 0.71541 91.938 91.579 92.294 -3.881 0.04557 -2.9608E-07 NaN 12.241 44 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4355600 41096 1701 27330 27347 -0.0916677579558609 SESPWCFT 8 Unmodified _SESPWCFT_ 0 0 0 nc|ENSG00000019991|P14210-3|HGF;ENSG00000019991|ENST00000222390|HGF nc|ENSG00000019991|P14210-3|HGF nc|ENSG00000019991|P14210-3|HGF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7320556640625 2 478.694561 955.374568 0.78919 0.00037778 -0.20205 -9.672E-05 0.58714 0.00028106 478.6943669730228 28.321 0.72138 26.365 26.124 26.846 -1.9561 31 20 2 0 0 0 0.45067 1 5056 5056 30.225 8.4782 1 482230 41097 1122 27331 27348 40466 40466 -0.10490402550692579 SESPYQRKA 9 Unmodified _SESPYQRKA_ 0 0 0 ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4 ENST00000561199.5_1_14:24652794-24657993:-|nuORF ENST00000561199.5_1_14:24652794-24657993:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2699584960938 2 533.269813 1064.52507 -0.011849 -6.3185E-06 0.50779 0.00027079 0.49594 0.00026447 533.2700372212375 14.332 0.24564 14.332 14.211 14.457 0 13 6 3 0 0 0 0.031786 1 2134 2134 79.596 27.328 1 2798300 41098 7272 27332 27349 40467 40467 -0.004609195675357114 SESPYQRKA 9 Unmodified _SESPYQRKA_ 0 0 0 ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4 ENST00000561199.5_1_14:24652794-24657993:-|nuORF ENST00000561199.5_1_14:24652794-24657993:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2697143554688 2 533.269813 1064.52507 -0.53308 -0.00028428 1.0202 0.00054405 0.48713 0.00025977 533.2701675260339 15.199 0.21206 14.085 13.99 14.202 -1.1142 14 5 3 0 0 0 0.25976 1 2330 2330 24.882 22.25 1 1210800 41099 7272 27332 27349 40468 40468 -0.004609195675357114 SESPYQRKA 9 Unmodified _SESPYQRKA_ 0 0 0 ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4 ENST00000561199.5_1_14:24652794-24657993:-|nuORF ENST00000561199.5_1_14:24652794-24657993:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2698974609375 2 533.269813 1064.52507 -0.2057 -0.0001097 0.80286 0.00042814 0.59715 0.00031844 533.2700278947534 15.236 0.13695 14.015 13.964 14.101 -1.2219 6 3 2 0 0 0 0.52396 2 2130 2127;2130 18.146 8.0724 1 248340 41100 7272 27332 27349 40469;40470 40470 -0.004609195675357114 SESRFFVSS 9 Unmodified _SESRFFVSS_ 0 0 0 nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG nc|ENSG00000172270|P35613-3|BSG nc|ENSG00000172270|P35613-3|BSG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6781616210938 2 523.251089 1044.48762 0.13573 7.1021E-05 0.095429 4.9933E-05 0.23116 0.00012095 523.2510848893629 72.387 0.83124 72.387 71.952 72.783 0 68 23 4 0 0 0 0.022552 1 13995 13995 114.19 54.818 1 86146000 41101 6204 27333 27350 40471 40471 -0.03284010833135653 SESRFFVSS 9 Unmodified _SESRFFVSS_ 0 0 0 nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG nc|ENSG00000172270|P35613-3|BSG nc|ENSG00000172270|P35613-3|BSG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6904296875 2 523.251089 1044.48762 -0.23623 -0.00012361 0.6471 0.0003386 0.41087 0.00021499 523.2513670485948 75.821 0.91631 72.406 71.984 72.9 -3.4151 84 25 5 0 0 0 0.057483 1 14812 14812 78.06 26.645 1 68296000 41102 6204 27333 27350 40472 40472 -0.03284010833135653 SESRFFVSS 9 Unmodified _SESRFFVSS_ 0 0 0 nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG nc|ENSG00000172270|P35613-3|BSG nc|ENSG00000172270|P35613-3|BSG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6884765625 2 523.251089 1044.48762 -0.49223 -0.00025756 0.99132 0.00051871 0.49909 0.00026115 523.2515742150017 76.053 0.95732 72.33 71.964 72.921 -3.7227 86 27 5 0 0 0 0.0014311 1 14416 14416 121.35 55.872 1 75977000 41103 6204 27333 27350 40473 40473 -0.03284010833135653 SESRFFVSS 9 Unmodified _SESRFFVSS_ 0 0 0 nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG nc|ENSG00000172270|P35613-3|BSG nc|ENSG00000172270|P35613-3|BSG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6768188476562 2 523.251089 1044.48762 0.26429 0.00013829 0.2983 0.00015609 0.56259 0.00029438 523.2511899575981 75.983 1.1746 72.349 71.82 72.995 -3.6337 89 33 4 0 0 0 6.9608E-05 1 14485 14485 128.93 58.6 1 72051000 41104 6204 27333 27350 40474 40474 -0.03284010833135653 SESRRVTK 8 Unmodified _SESRRVTK_ 0 0 0 AP3B1|p.K923Nfs*4|5|0.24|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant;nc|ENSG00000132842|O00203-3|AP3B1;ENSG00000132842|ENST00000255194|AP3B1 AP3B1|p.K923Nfs*4|5|0.24|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant AP3B1|p.K923Nfs*4|5|0.24|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77154541015625 2 481.772522 961.530492 NaN NaN NaN NaN NaN NaN NaN 23.095 1 23.095 22.595 23.595 0 0 0 0 0.21404 1 3927 3927 13.906 1.6654 1 41105 175 27334 27351 40475 40475 0.04818804014962552 SESSIEGGGP 10 Unmodified _SESSIEGGGP_ 0 0 0 ENSG00000185112|ENST00000329759|FAM43A ENSG00000185112|ENST00000329759|FAM43A ENSG00000185112|ENST00000329759|FAM43A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2398376464844 2 460.203804 918.393055 NaN NaN NaN NaN NaN NaN NaN 27.632 1 27.632 27.132 28.132 0 0 0 0 0.22526 1 4880 4880 21.747 5.8995 1 41106 6962 27335 27352 40476 40476 -0.06940569375103678 SESSLKIY 8 Unmodified _SESSLKIY_ 0 0 0 L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|42|3|anti-sense L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|42|3|anti-sense L1MA5_dup3310|chr12:13370562-13371174:-|2.1440072381684363|0.0494638783449475|5.44|480.0|42|3|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2496643066406 2 463.745108 925.475663 0.072031 3.3404E-05 0.064231 2.9787E-05 0.13626 6.3191E-05 463.74505306808356 58.025 1.0852 54.82 54.179 55.264 -3.2052 92 30 4 0 0 0 0.56049 1 10799 10799 24.674 0.65332 1 18564000 41107 12020 27336 27353 40477 40477 0.009943724236677554 SESSQLNLLP 10 Unmodified _SESSQLNLLP_ 0 0 0 ENSG00000158683|ENST00000289672|PKD1L1;PKD1L1|p.R2615Lfs*97|1|0.05|ENSG00000158683|chr7:47803328-47803329|-/TTTATCA|frameshift_variant;PKD1L1|p.L2298Cfs*3|1|0.47|ENSG00000158683|chr7:47821148-47821148|A/-|frameshift_variant;nc|ENSG00000158683|Q8TDX9-2|PKD1L1;PKD1L1|p.K1780Rfs*33|1|0.36|ENSG00000158683|chr7:47843068-47843068|T/-|frameshift_variant ENSG00000158683|ENST00000289672|PKD1L1 ENSG00000158683|ENST00000289672|PKD1L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7725219726562 2 544.285128 1086.5557 0.54261 0.00029533 -0.54127 -0.0002946 0.0013396 7.2913E-07 544.2847880502534 82.881 0.71732 82.881 82.432 83.149 0 35 20 2 0 0 0 0.52179 1 16111 16111 32.786 10.049 1 7382200 41108 5177 27337 27354 40478 40478 0.015888140268771167 SESSSLPIS 9 Unmodified _SESSSLPIS_ 0 0 0 REV__ENSG00000007545|ENST00000397412|CRAMP1 REV__ENSG00000007545|ENST00000397412|CRAMP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7518005371094 2 453.724372 905.434192 -0.16261 -7.3781E-05 0.42205 0.00019149 0.25944 0.00011771 453.72449709764084 59.026 0.98291 56.115 55.648 56.631 -2.9105 83 27 4 0 0 0 0.49001 1 11264 11264 28.487 0 1 14566000 + 41109 13892 27338 27355 40479 40479 -0.02230808335639267 SESSSQKGF 9 Unmodified _SESSSQKGF_ 0 0 0 REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7207946777344 2 478.719621 955.42469 0.41591 0.0001991 1.966 0.00094117 2.3819 0.0011403 478.7203629956438 118.65 0.77334 114.24 113.89 114.66 -4.4088 30 21 2 0 0 0 0.19311 1 22910 22910 37.974 1.9298 1 1530900 + 41110 20560 27339 27356 40480 40480 -0.05480576621164346 SESSSVASKLS 11 Unmodified _SESSSVASKLS_ 0 0 0 ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000136531|Q99250-2|SCN2A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF ENSG00000136531|ENST00000375437|SCN2A ENSG00000136531|ENST00000375437|SCN2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2849731445312 2 541.272218 1080.52988 NaN NaN NaN NaN NaN NaN NaN 59.182 1 59.182 58.682 59.682 0 0 0 0 0.18831 1 11337 11337 21.537 3.402 1 41111 4017 27340 27357 40481 40481 -0.007160802154203338 SESSSVASKLS 11 Unmodified _SESSSVASKLS_ 0 0 0 ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000136531|Q99250-2|SCN2A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF ENSG00000136531|ENST00000375437|SCN2A ENSG00000136531|ENST00000375437|SCN2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.284423828125 2 541.272218 1080.52988 NaN NaN NaN NaN NaN NaN NaN 59.469 1 59.469 58.969 59.969 0 0 0 0 0.10942 1 11394 11394 34.402 9.0024 1 41112 4017 27340 27357 40482 40482 -0.007160802154203338 SESSSVASKLS 11 Unmodified _SESSSVASKLS_ 0 0 0 ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000136531|Q99250-2|SCN2A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF ENSG00000136531|ENST00000375437|SCN2A ENSG00000136531|ENST00000375437|SCN2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2745971679688 2 541.272218 1080.52988 NaN NaN NaN NaN NaN NaN NaN 62.475 1 59.513 59.013 60.013 -2.9614 0 0 0 0.18831 1 12056 12056 21.537 4.5947 1 41113 4017 27340 27357 40483 40483 -0.007160802154203338 SESSVTLSP 9 Unmodified _SESSVTLSP_ 0 0 0 NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant;ENSG00000134250|ENST00000256646|NOTCH2 NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7691345214844 2 453.724372 905.434192 -0.051628 -2.3425E-05 0.29567 0.00013415 0.24404 0.00011073 453.724407459664 59.63 0.96054 59.63 58.935 59.895 0 44 26 2 0 0 0 0.49001 1 11339 11339 28.487 0 1 2503700 41114 3836 27341 27358 40484 40484 -0.02230808335639267 SESSVTLSP 9 Unmodified _SESSVTLSP_ 0 0 0 NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant;ENSG00000134250|ENST00000256646|NOTCH2 NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7540588378906 2 453.724372 905.434192 -0.0435 -1.9737E-05 0.14684 6.6623E-05 0.10334 4.6886E-05 453.7244126227441 62.304 1.1562 59.342 58.688 59.844 -2.9614 81 32 3 0 0 0 0.072845 1 12065 12065 22.621 13.708 1 5953700 41115 3836 27341 27358 40485 40485 -0.02230808335639267 SESSVTLSP 9 Unmodified _SESSVTLSP_ 0 0 0 NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant;ENSG00000134250|ENST00000256646|NOTCH2 NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 454.2455749511719 2 453.724372 905.434192 0.092846 4.2126E-05 0.14884 6.753E-05 0.24168 0.00010966 453.7243005654224 62.568 1.0593 59.184 58.73 59.789 -3.3837 62 29 3 0 0 0 0.084568 1 11698 11698 22.736 16.249 1 3663100 41116 3836 27341 27358 40486 40486 -0.02230808335639267 SESSVTLSP 9 Unmodified _SESSVTLSP_ 0 0 0 NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant;ENSG00000134250|ENST00000256646|NOTCH2 NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.724372 905.434192 0.18411 8.3534E-05 -0.029642 -1.3449E-05 0.15447 7.0085E-05 453.7243147315547 62.612 1.1762 59.372 58.756 59.932 -3.2395 -0.009934 -0.00016264 NaN 22.621 57 33 2 NaN NaN NaN NaN 0 NaN NaN 0 4061300 41117 3836 27341 27358 -0.02230808335639267 SESTAIISY 9 Unmodified _SESTAIISY_ 0 0 0 nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000585975.5_1_16:5140431-5147740:-|nuORF;ENST00000585436.5_1_16:5139172-5145393:-|nuORF nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 486.72369384765625 2 485.740022 969.465492 -0.085666 -4.1611E-05 0.32559 0.00015815 0.23992 0.00011654 485.7401019599911 91.836 0.76434 91.836 91.426 92.191 0 55 21 3 0 0 0 0.044599 1 17965 17965 31.728 27.251 1 11973000 41118 3051 27342 27359 40487 40487 -0.020462353015545887 SESTAIISY 9 Unmodified _SESTAIISY_ 0 0 0 nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000585975.5_1_16:5140431-5147740:-|nuORF;ENST00000585436.5_1_16:5139172-5145393:-|nuORF nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 485.740022 969.465492 0.15535 7.546E-05 0.013581 6.5968E-06 0.16893 8.2057E-05 485.73995797401443 95.945 0.85091 91.895 91.546 92.397 -4.0496 0.010358 -0.00010509 NaN 31.728 72 24 4 NaN NaN NaN NaN 0 NaN NaN 0 17869000 41119 3051 27342 27359 -0.020462353015545887 SESTAIISY 9 Unmodified _SESTAIISY_ 0 0 0 nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000585975.5_1_16:5140431-5147740:-|nuORF;ENST00000585436.5_1_16:5139172-5145393:-|nuORF nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 485.740022 969.465492 0.24046 0.0001168 -0.10589 -5.1433E-05 0.13457 6.5367E-05 485.7398897090731 96.134 0.97181 91.9 91.465 92.437 -4.2348 0.014986 -0.00022115 NaN 31.728 80 27 4 NaN NaN NaN NaN 0 NaN NaN 0 20233000 41120 3051 27342 27359 -0.020462353015545887 SESTAIISY 9 Unmodified _SESTAIISY_ 0 0 0 nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000585975.5_1_16:5140431-5147740:-|nuORF;ENST00000585436.5_1_16:5139172-5145393:-|nuORF nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 485.740022 969.465492 -0.22619 -0.00010987 0.33566 0.00016304 0.10947 5.3172E-05 485.740126142251 95.789 1.0338 91.908 91.477 92.51 -3.881 0.023622 0.00020781 NaN 31.728 79 29 4 NaN NaN NaN NaN 0 NaN NaN 0 22164000 41121 3051 27342 27359 -0.020462353015545887 SESTSSDSHNK 11 Unmodified _SESTSSDSHNK_ 0 0 0 REV__nc|ENSG00000163605|Q9NY27-2|PPP4R2 REV__nc|ENSG00000163605|Q9NY27-2|PPP4R2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2503662109375 2 589.749638 1177.48472 0.34567 0.00020386 -0.95994 -0.00056612 -0.61427 -0.00036226 589.7489907376162 33.775 0.28401 33.775 33.58 33.864 0 12 7 2 0 0 0 0.70375 1 6155 6155 11.495 1.4208 1 651120 + 41122 17588 27343 27360 40488 40488 -0.09691930748613231 SESTWHGAS 9 Unmodified _SESTWHGAS_ 0 0 0 REV__nc|ENSG00000171560|P02671|FGA REV__nc|ENSG00000171560|P02671|FGA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2392578125 2 481.204138 960.393724 NaN NaN NaN NaN NaN NaN NaN 20.531 1 18.809 18.309 19.309 -1.7211 0 0 0 0.23508 1 3164 3164 11.64 2.2929 1 + 41123 24167 27344 27361 40489 40489 -0.08805729935420459 SESVPSAKSA 10 Unmodified _SESVPSAKSA_ 0 0 0 GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant;GOLGB1|p.K2450Rfs*27|1|0.37|ENSG00000173230|chr3:121692000-121692000|T/-|frameshift_variant;GOLGB1|p.D2495Tfs*21|1|0.22|ENSG00000173230|chr3:121691867-121691867|T/-|frameshift_variant;nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23309326171875 2 481.743096 961.47164 0.3017 0.00014534 -0.15272 -7.3574E-05 0.14898 7.1768E-05 481.7427253460728 20.298 0.31092 18.902 18.653 18.964 -1.3966 10 8 2 0 0 0 0.85223 1 3366 3366 13.042 0 1 180920 41124 6280 27345 27362 40490 40490 -0.010637170700420029 SESVPVIAA 9 Unmodified _SESVPVIAA_ 0 0 0 ENSG00000168944|ENST00000306467|CEP120;CEP120|p.K738Rfs*29|2|0.21|ENSG00000168944|chr5:123377519-123377519|T/-|frameshift_variant;nc|ENSG00000168944|Q8N960-2|CEP120;ENST00000513565.6_1_5:122694091-122724023:-|nuORF ENSG00000168944|ENST00000306467|CEP120 ENSG00000168944|ENST00000306467|CEP120 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2283935546875 2 436.739825 871.465098 0.015873 6.9322E-06 -0.13282 -5.8007E-05 -0.11694 -5.1074E-05 436.73967740279556 89.931 0.72888 89.931 89.53 90.259 0 25 20 2 0 0 0 5.562E-07 2 17588 17584;17588 77.984 39.074 1 4048700 41125 5953 27346 27363 40491;40492 40492 0.024223897692422725 SESVPVKQ 8 Unmodified _SESVPVKQ_ 0 0 0 REV__ENSG00000251664|ENST00000398631|PCDHA12 REV__ENSG00000251664|ENST00000398631|PCDHA12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21710205078125 2 437.23745 872.460347 -0.13187 -5.7657E-05 0.34636 0.00015144 0.21449 9.3783E-05 437.2376488576376 93.452 1.033 89.461 88.968 90.001 -3.9907 66 29 3 0 0 0 0.18731 2 18357 18357;18400 46.921 6.4723 1 18021000 + 41126 19831 27347 27364 40493;40494 40493 0.01901505626483413 SESYSDYSASY 11 Unmodified _SESYSDYSASY_ 0 0 0 REV__CEP350|p.K1725Nfs*24|1|0.43|ENSG00000135837|chr1:180053928-180053928|A/-|frameshift_variant REV__CEP350|p.K1725Nfs*24|1|0.43|ENSG00000135837|chr1:180053928-180053928|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7793579101562 2 629.740948 1257.46734 0.70366 0.00044312 -1.8696 -0.0011773 -1.1659 -0.00073422 630.2423862226917 48.364 0.6682 48.364 48.103 48.771 0 85 18 6 0 0 0 0.7348 1 9172 9172 9.3831 0.63772 1 11777000 + 41127 13381 27348 27365 40495 40495 -0.15109271074265962 SETALIHIA 9 Unmodified _SETALIHIA_ 0 0 0 nc|ENSG00000146350|Q96NH3-4|TBC1D32;TBC1D32|p.K717Nfs*29|1|0.1|ENSG00000146350|chr6:121242207-121242207|T/-|frameshift_variant;TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant;TBC1D32|p.F1022Sfs*5|1|0.3|ENSG00000146350|chr6:121113166-121113166|A/-|frameshift_variant;ENSG00000146350|ENST00000398212|TBC1D32 nc|ENSG00000146350|Q96NH3-4|TBC1D32 nc|ENSG00000146350|Q96NH3-4|TBC1D32 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72332763671875 2 477.766374 953.518196 0.11466 5.4781E-05 0.23444 0.00011201 0.3491 0.00016679 477.7664723894165 104.99 0.83077 100.61 100.15 100.98 -4.3764 65 23 4 0 0 0 0.25183 1 20102 20102 38.151 21.209 1 9660000 41128 12370 27349 27366 40496 40496 0.03957767551912639 SETANYISA 9 Unmodified _SETANYISA_ 0 0 0 ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2;ENST00000469038.1_1_3:49011147-49012531:+|nuORF;ENST00000465217.1_1_3:49008110-49012121:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7236633300781 2 478.221997 954.429441 -0.071559 -3.4221E-05 0.55578 0.00026578 0.48422 0.00023156 478.2221453131518 53.376 0.70781 53.376 53.001 53.709 0 48 19 3 0 0 0 0.026664 3 10202 10112;10157;10202 85.272 33.004 1 11064000 41129 6515 27350 27367 40497;40498;40499 40499 -0.04959692478416855 SETANYISA 9 Unmodified _SETANYISA_ 0 0 0 ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2;ENST00000469038.1_1_3:49011147-49012531:+|nuORF;ENST00000465217.1_1_3:49008110-49012121:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7236328125 2 478.221997 954.429441 -0.15481 -7.4036E-05 0.6346 0.00030348 0.47979 0.00022945 478.2222094541806 56.265 0.9576 53.371 52.898 53.856 -2.8944 67 27 3 0 0 0 0.010349 5 10804 10716;10760;10779;10804;10851 103.75 43.674 1 18255000 41130 6515 27350 27367 40500;40501;40502;40503;40504 40503 -0.04959692478416855 SETANYISA 9 Unmodified _SETANYISA_ 0 0 0 ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2;ENST00000469038.1_1_3:49011147-49012531:+|nuORF;ENST00000465217.1_1_3:49008110-49012121:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7237548828125 2 478.221997 954.429441 0.060639 2.8999E-05 0.43329 0.00020721 0.49392 0.00023621 478.2221342930243 56.569 0.91257 53.379 52.948 53.861 -3.1895 62 25 3 0 0 0 0.019872 2 10520 10466;10520 92.491 31.134 1 16529000 41131 6515 27350 27367 40505;40506 40506 -0.04959692478416855 SETANYISA 9 Unmodified _SETANYISA_ 0 0 0 ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2;ENST00000469038.1_1_3:49011147-49012531:+|nuORF;ENST00000465217.1_1_3:49008110-49012121:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7238464355469 2 478.221997 954.429441 0.032494 1.5539E-05 0.49554 0.00023698 0.52804 0.00025252 478.222142792945 56.527 0.81324 53.351 53.008 53.821 -3.1761 60 22 3 0 0 0 0.019872 3 10515 10470;10515;10558 92.491 33.813 1 16178000 41132 6515 27350 27367 40507;40508;40509 40508 -0.04959692478416855 SETAPAAPA 9 Unmodified _SETAPAAPA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.396484375 1 814.394124 813.386848 1.5449 0.0012581 -1.1246 -0.00091588 0.42026 0.00034226 814.393248308525 25.005 0.51867 23.357 23.131 23.649 -1.6482 27 14 3 0 0 0 0.14832 1 4367 4367 44.407 14.182 1 1478000 41133 7133 27351 27368 40510 40510 -0.02731042816003537 SETARRQA 8 Unmodified _SETARRQA_ 0 0 0 REV__ENST00000512593.5_1_5:176817073-176817265:+|nuORF REV__ENST00000512593.5_1_5:176817073-176817265:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24273681640625 2 459.741222 917.467892 -0.022191 -1.0202E-05 0.55997 0.00025744 0.53778 0.00024724 459.741429740106 84.22 2.3722 80.508 79.816 82.188 -3.7117 142 67 3 0 0 0 0.73936 2 15969 15967;15969 8.5933 1.304 1 4900000 + 41134 22558 27352 27369 40511;40512 40512 0.005856579467604206 SETAYPGQTQY 11 Unmodified _SETAYPGQTQY_ 0 0 0 ENST00000471498.5_1_1:28324859-28384546:-|nuORF;EYA3|p.L467Ffs*10|1|0.42|ENSG00000158161|chr1:27989711-27989714|AAGT/-|frameshift_variant;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3 ENST00000471498.5_1_1:28324859-28384546:-|nuORF ENST00000471498.5_1_1:28324859-28384546:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7515869140625 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 134.29 1 129.47 128.97 129.97 -4.8175 0 0 0 0.22683 1 25855 25855 10.8 0.72558 1 41135 5155 27353 27370 40513 40513 -0.07632981703750374 SETDFKVM 8 Unmodified _SETDFKVM_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72332763671875 2 478.723318 955.432083 0.19995 9.5719E-05 -0.013503 -6.4643E-06 0.18644 8.9255E-05 478.7232332041612 76.78 0.84039 76.78 76.378 77.218 0 60 23 3 0 0 0 0.03601 3 14917 14863;14917;14962 126.57 74.298 1 12107000 41136 4656 27354 27371 40514;40515;40516 40515 -0.04741560345109974 SETDFKVM 8 Unmodified _SETDFKVM_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7232971191406 2 478.723318 955.432083 0.037869 1.8129E-05 -0.014975 -7.1688E-06 0.022894 1.096E-05 478.72325053698745 80.248 0.88268 76.738 76.403 77.286 -3.5102 60 24 3 0 0 0 0.0083977 3 15673 15627;15673;15717 139.14 84.365 1 15644000 41137 4656 27354 27371 40517;40518;40519 40518 -0.04741560345109974 SETDFKVM 8 Unmodified _SETDFKVM_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7233581542969 2 478.723318 955.432083 -0.024174 -1.1573E-05 -0.18247 -8.7351E-05 -0.20664 -9.8924E-05 478.72330885316893 80.608 0.97417 76.769 76.218 77.192 -3.8392 72 27 4 0 0 0 0.0083977 3 15257 15226;15257;15307 139.14 79.343 1 9759400 41138 4656 27354 27371 40520;40521;40522 40521 -0.04741560345109974 SETDFKVM 8 Unmodified _SETDFKVM_ 0 0 0 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7232971191406 2 478.723318 955.432083 -0.17786 -8.5147E-05 0.047247 2.2618E-05 -0.13062 -6.2529E-05 478.7233749358548 80.431 0.97652 76.744 76.27 77.247 -3.6879 81 27 4 0 0 0 1.8797E-05 4 15316 15266;15300;15316;15372 152.41 85.563 1 13674000 41139 4656 27354 27371 40523;40524;40525;40526 40525 -0.04741560345109974 SETDFKVMA 9 Oxidation (M) _SETDFKVM(Oxidation (M))A_ SETDFKVM(1)A SETDFKVM(89)A 0 0 1 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279541015625 2 522.239332 1042.46411 -0.060935 -3.1822E-05 -0.2533 -0.00013228 -0.31424 -0.00016411 522.2391786294643 57.841 0.80109 57.841 57.41 58.211 0 72 22 4 0 0 0 0.029747 1 11090 11090 89.401 51.427 1 30463000 41140 4656 27355 27372 40527 40527 72 -0.055421926619601436 SETDFKVMA 9 Oxidation (M) _SETDFKVM(Oxidation (M))A_ SETDFKVM(1)A SETDFKVM(150)A 0 0 1 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.28173828125 2 522.239332 1042.46411 -0.21305 -0.00011126 -0.23501 -0.00012273 -0.44806 -0.00023399 522.2391850665786 60.67 0.75797 57.737 57.41 58.168 -2.9333 73 21 4 0 0 0 2.219E-07 1 11654 11654 145.13 94.275 1 27216000 41141 4656 27355 27372 40528 40528 72 -0.055421926619601436 SETDFKVMA 9 Oxidation (M) _SETDFKVM(Oxidation (M))A_ SETDFKVM(1)A SETDFKVM(130)A 0 0 1 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.281494140625 2 522.239332 1042.46411 -0.60714 -0.00031707 0.11657 6.0876E-05 -0.49057 -0.00025619 522.2393716918353 61.078 0.87656 57.708 57.308 58.185 -3.3694 78 24 4 0 0 0 2.7182E-05 2 11402 11336;11402 133.05 87.031 1 22395000 41142 4656 27355 27372 40529;40530 40530 72 -0.055421926619601436 SETDFKVMA 9 Oxidation (M) _SETDFKVM(Oxidation (M))A_ SETDFKVM(1)A SETDFKVM(150)A 0 0 1 ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP ENSG00000146457|ENST00000621533|WTAP ENSG00000146457|ENST00000621533|WTAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.276123046875 2 522.239332 1042.46411 0.22285 0.00011638 -0.79685 -0.00041615 -0.574 -0.00029977 522.2388903439323 60.953 0.87597 57.73 57.312 58.188 -3.2237 78 24 4 0 0 0 2.219E-07 1 11428 11428 145.13 94.275 1 23843000 41143 4656 27355 27372 40531 40531 72 -0.055421926619601436 SETEGNFVY 9 Unmodified _SETEGNFVY_ 0 0 0 ENSG00000150051|ENST00000419761|MKX ENSG00000150051|ENST00000419761|MKX ENSG00000150051|ENST00000419761|MKX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.686767578125 2 523.227279 1044.44001 -0.3723 -0.0001948 -1.5862 -0.00082995 -1.9585 -0.0010248 523.2265434980433 85.665 1.0128 81.714 81.248 82.261 -3.9503 57 28 3 0 0 0 0.25183 1 16337 16337 34.402 6.7729 1 9089400 41144 4819 27356 27373 40532 40532 -0.08043709823982681 SETELKDTY 9 Unmodified _SETELKDTY_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7942504882812 2 543.253494 1084.49243 0.49379 0.00026825 -0.18505 -0.00010053 0.30875 0.00016773 543.2533743561992 40.214 0.84838 40.214 39.93 40.778 0 68 23 5 0 0 0 1.4163E-11 3 7444 7444;7450;7462 160.69 78.799 1 17708000 41145 6390 27357 27374 40533;40534;40535 40533 -0.0464317148102964 SETELKDTY 9 Unmodified _SETELKDTY_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.773193359375 2 543.253494 1084.49243 0.12569 6.8284E-05 -0.10375 -5.6365E-05 0.021941 1.1919E-05 543.2534010505847 43.249 0.92494 40.529 40.022 40.947 -2.7191 79 25 4 0 0 0 4.8487E-06 2 8118 8019;8118 140.63 58.743 1 27098000 41146 6390 27357 27374 40536;40537 40537 -0.0464317148102964 SETELKDTY 9 Unmodified _SETELKDTY_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7802734375 2 543.253494 1084.49243 -0.030956 -1.6817E-05 0.19427 0.00010554 0.16331 8.8721E-05 543.2535321127006 43.229 1.0314 40.463 39.943 40.974 -2.7661 88 28 4 0 0 0 0.0024928 1 7839 7839 117.76 52.526 1 20694000 41147 6390 27357 27374 40538 40538 -0.0464317148102964 SETELKDTY 9 Unmodified _SETELKDTY_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7792358398438 2 543.253494 1084.49243 0.060461 3.2846E-05 0.14722 7.9978E-05 0.20768 0.00011282 543.2535138312737 43.135 1.0066 40.529 40.04 41.046 -2.606 77 28 3 0 0 0 6.9608E-05 1 7834 7834 128.93 43.66 1 23125000 41148 6390 27357 27374 40539 40539 -0.0464317148102964 SETERKDP 8 Unmodified _SETERKDP_ 0 0 0 ST18|p.N621Ifs*10|2|0.23|ENSG00000147488|chr8:52149922-52149922|T/-|frameshift_variant;ST18|p.E810Kfs*5|1|0.31|ENSG00000147488|chr8:52133074-52133074|T/-|frameshift_variant;ST18|p.F884Lfs*27|1|0.33|ENSG00000147488|chr8:52131972-52131972|A/-|frameshift_variant;ST18|p.L941Hfs*8|1|0.04|ENSG00000147488|chr8:52118375-52118376|-/AACTTGTGTGAAAATATAT|frameshift_variant;ENSG00000147488|ENST00000689386|ST18 ST18|p.N621Ifs*10|2|0.23|ENSG00000147488|chr8:52149922-52149922|T/-|frameshift_variant ST18|p.N621Ifs*10|2|0.23|ENSG00000147488|chr8:52149922-52149922|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2346496582031 2 481.232896 960.451239 0.089284 4.2967E-05 -0.10273 -4.9435E-05 -0.013442 -6.4687E-06 481.2330550048895 38.186 0.95617 35.744 35.38 36.336 -2.4419 37 26 2 0 0 0 0.64512 1 6887 6887 19.257 1.1106 1 1487200 41149 4707 27358 27375 40540 40540 -0.030568877298605912 SETKPKTKNID 11 Unmodified _SETKPKTKNID_ 0 0 0 nc|ENSG00000151575|Q8N6V9-2|TEX9;ENSG00000151575|ENST00000696102|TEX9 nc|ENSG00000151575|Q8N6V9-2|TEX9 nc|ENSG00000151575|Q8N6V9-2|TEX9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7747802734375 2 630.843342 1259.67213 0.88845 0.00056047 3.3398 0.0021069 4.2283 0.0026674 631.3482274670415 102.83 0.10664 98.642 98.591 98.698 -4.1861 4 2 2 0 0 0 0.95894 1 20215 20215 2.7352 0 1 550200 41150 4873 27359 27376 40541 40541 0.05268132526748559 SETKTHFED 9 Unmodified _SETKTHFED_ 0 0 0 ENST00000324932.11_1_11:3803342-3818659:-|nuORF ENST00000324932.11_1_11:3803342-3818659:-|nuORF ENST00000324932.11_1_11:3803342-3818659:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7691040039062 2 547.24346 1092.47237 0.78787 0.00043116 -0.72724 -0.00039798 0.060633 3.3181E-05 547.2428321029015 106.98 0.83018 102.85 102.39 103.22 -4.135 52 23 3 0 0 0 0.81703 1 20545 20545 10.074 0 1 4048200 41151 8736 27360 27377 40542 40542 -0.07016922420984884 SETMEGYL 8 Unmodified _SETMEGYL_ 0 0 0 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2585754394531 2 465.199676 928.384799 -0.13631 -6.341E-05 -0.061014 -2.8384E-05 -0.19732 -9.1794E-05 465.1996588647037 89.877 0.49895 86.018 85.727 86.226 -3.8595 19 13 2 0 0 0 0.98792 1 17550 17550 5.2307 2.6532 1 915550 + 41152 25000 27361 27378 40543 40543 -0.08225839616113717 SETNKKYS 8 Unmodified _SETNKKYS_ 0 0 0 ENSG00000116793|ENST00000369604|PHTF1;ENST00000481652.1_1_1:114242829-114248598:-|nuORF ENSG00000116793|ENST00000369604|PHTF1 ENSG00000116793|ENST00000369604|PHTF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7376708984375 2 478.737814 955.461075 0.20592 9.8582E-05 -0.19444 -9.3085E-05 0.011482 5.497E-06 478.7377464516896 44.193 0.40545 44.193 43.951 44.357 0 16 11 2 0 0 0 0.58432 1 8307 8307 23.148 1.6114 1 595830 41153 2955 27362 27379 40544 40544 -0.018436997244748454 SETNKKYS 8 Unmodified _SETNKKYS_ 0 0 0 ENSG00000116793|ENST00000369604|PHTF1;ENST00000481652.1_1_1:114242829-114248598:-|nuORF ENSG00000116793|ENST00000369604|PHTF1 ENSG00000116793|ENST00000369604|PHTF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7377624511719 2 478.737814 955.461075 -0.050918 -2.4377E-05 0.0022798 1.0914E-06 -0.048639 -2.3285E-05 478.73783137976795 47.542 1.1958 44.673 44.149 45.345 -2.869 53 33 2 0 0 0 0.45067 1 8911 8911 30.225 3.3412 1 1302300 41154 2955 27362 27379 40545 40545 -0.018436997244748454 SETNKKYS 8 Unmodified _SETNKKYS_ 0 0 0 ENSG00000116793|ENST00000369604|PHTF1;ENST00000481652.1_1_1:114242829-114248598:-|nuORF ENSG00000116793|ENST00000369604|PHTF1 ENSG00000116793|ENST00000369604|PHTF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7224426269531 2 478.737814 955.461075 0.0030207 1.4461E-06 -0.64509 -0.00030883 -0.64207 -0.00030738 478.7374090536517 47.72 1.2903 44.778 44.134 45.425 -2.9421 58 36 2 0 0 0 0.45067 1 8632 8632 30.225 4.8255 1 1317200 41155 2955 27362 27379 40546 40546 -0.018436997244748454 SETPARTL 8 Unmodified _SETPARTL_ 0 0 0 nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48186957-48187272:-|nuORF;HDAC7|p.M769Wfs*12|1|0.42|ENSG00000061273|chr12:47787744-47787744|G/-|frameshift_variant nc|ENSG00000061273|Q8WUI4-10|HDAC7 nc|ENSG00000061273|Q8WUI4-10|HDAC7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2148742675781 2 437.735074 873.455596 0.29713 0.00013006 -0.55552 -0.00024317 -0.2584 -0.00011311 437.7349395510123 30.125 0.38438 28.232 28.032 28.416 -1.8928 14 10 2 0 0 0 0.97888 1 5160 5160 18.146 3.5647 1 435560 41156 1314 27363 27380 40547 40547 0.013806214837245534 SETPARTL 8 Unmodified _SETPARTL_ 0 0 0 nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48186957-48187272:-|nuORF;HDAC7|p.M769Wfs*12|1|0.42|ENSG00000061273|chr12:47787744-47787744|G/-|frameshift_variant nc|ENSG00000061273|Q8WUI4-10|HDAC7 nc|ENSG00000061273|Q8WUI4-10|HDAC7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.235595703125 2 437.735074 873.455596 0.3792 0.00016599 -0.3221 -0.000141 0.057095 2.4992E-05 437.7349914751726 30.187 0.28451 28.113 28.007 28.291 -2.0743 13 7 2 0 0 0 0.97174 1 5180 5180 13.906 3.0821 1 397220 41157 1314 27363 27380 40548 40548 0.013806214837245534 SETPKTHA 8 Unmodified _SETPKTHA_ 0 0 0 REV__CCDC168|p.P4739H|1|0.04|ENSG00000175820|chr13:102736481-102736481|G/T|missense_variant REV__CCDC168|p.P4739H|1|0.04|ENSG00000175820|chr13:102736481-102736481|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2225036621094 2 435.719424 869.424296 0.21932 9.5563E-05 -1.1148 -0.00048572 -0.89543 -0.00039016 435.7189179759573 26.375 0.71633 26.375 26.123 26.839 0 57 20 4 0 0 0 8448 1 4595 4595 0.68139 0 1 32334000 + 41158 13289 27364 27381 40549 40549 -0.015639515503835355 SETQAPLAL 9 Unmodified _SETQAPLAL_ 0 0 0 ENST00000563592.5_1_15:73075590-73075839:+|nuORF ENST00000563592.5_1_15:73075590-73075839:+|nuORF ENST00000563592.5_1_15:73075590-73075839:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25 2 465.250557 928.486562 -0.031476 -1.4644E-05 -0.12596 -5.8605E-05 -0.15744 -7.3249E-05 465.2503688211382 115.64 1.3797 111.17 110.64 112.02 -4.4726 64 39 3 0 0 0 0.62102 1 22877 22877 11.64 0 1 3965800 41159 11335 27365 27382 40550 40550 0.019457747979345186 SETRTCNAA 9 Unmodified _SETRTCNAA_ 0 0 0 REV__nc|ENSG00000149541|O94766-2|B3GAT3 REV__nc|ENSG00000149541|O94766-2|B3GAT3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.1434631347656 3 318.143274 951.407994 NaN NaN NaN NaN NaN NaN NaN 27.853 1 25.857 25.357 26.357 -1.9962 0 0 0 0.23508 1 4675 4675 2.7352 0 1 + 41160 24093 27366 27383 40551 40551 -0.06965400778790354 SETSGIARP 9 Unmodified _SETSGIARP_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24114990234375 2 459.237981 916.461409 0.30207 0.00013872 0.2235 0.00010264 0.52558 0.00024137 459.2380107490867 26.318 1.5819 26.318 25.358 26.939 0 126 45 4 0 0 0 0.11219 5 4625 4531;4578;4583;4625;4675 51.63 17.527 1 19396000 41161 12213 27367 27384 40552;40553;40554;40555;40556 40555 -0.00016280004626878508 SETSGIARP 9 Unmodified _SETSGIARP_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2402038574219 2 459.237981 916.461409 0.74367 0.00034152 -0.34496 -0.00015842 0.39871 0.0001831 459.2377779927734 28.143 1.3878 26.187 25.386 26.774 -1.9561 130 39 4 0 0 0 0.11219 6 4935 4892;4935;4982;4995;5034;5084 51.63 13.656 1 20922000 41162 12213 27367 27384 40557;40558;40559;40560;40561;40562 40558 -0.00016280004626878508 SETSGIARP 9 Unmodified _SETSGIARP_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2413024902344 2 459.237981 916.461409 0.19285 8.8562E-05 0.45367 0.00020834 0.64652 0.0002969 459.238077733174 27.973 1.7164 26.218 25.264 26.981 -1.7552 149 48 5 0 0 0 0.11219 5 4716 4623;4673;4694;4716;4764 51.63 13.656 1 21412000 41163 12213 27367 27384 40563;40564;40565;40566;40567 40566 -0.00016280004626878508 SETSGIARP 9 Unmodified _SETSGIARP_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2410583496094 2 459.237981 916.461409 0.27215 0.00012498 0.22147 0.00010171 0.49362 0.00022669 459.238045444905 28.184 1.3673 26.188 25.396 26.763 -1.9962 128 38 4 0 0 0 0.11219 3 4699 4627;4699;4751 51.63 9.67 1 18028000 41164 12213 27367 27384 40568;40569;40570 40569 -0.00016280004626878508 SETSKATPLM 10 Unmodified _SETSKATPLM_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2766723632812 2 532.768257 1063.52196 0.6905 0.00036788 -0.52826 -0.00028144 0.16224 8.6438E-05 532.7678999780645 28.822 0.52482 27.067 26.736 27.26 -1.7552 28 14 3 0 0 0 0.52224 1 4832 4832 0.013265 0 1 1448300 41165 6711 27368 27385 40571 40571 -0.007259307365529821 SETSNWIAA 9 Unmodified _SETSNWIAA_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.261962890625 2 489.729989 977.445425 0.12987 6.3601E-05 0.0064035 3.136E-06 0.13627 6.6737E-05 489.7299651178721 94.134 1.0054 90.143 89.553 90.559 -3.9907 73 28 4 0 0 0 0.049627 3 18478 18399;18478;18514 71.134 42.647 1 6861500 41166 5706 27369 27386 40572;40573;40574 40573 -0.044199862415439384 SETSNWIAA 9 Unmodified _SETSNWIAA_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2765197753906 2 489.729989 977.445425 -0.20341 -9.9618E-05 0.2158 0.00010568 0.012388 6.0667E-06 489.7301156020266 94.037 0.82742 90.193 89.674 90.502 -3.844 58 23 3 0 0 0 0.09143 2 18009 17973;18009 58.679 42.832 1 5343000 41167 5706 27369 27386 40575;40576 40576 -0.044199862415439384 SETSNWIAA 9 Unmodified _SETSNWIAA_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.729989 977.445425 0.040377 1.9774E-05 -0.15762 -7.719E-05 -0.11724 -5.7416E-05 489.72998058714177 90.039 0.73447 90.039 89.666 90.401 0 -0.082938 -0.00014844 NaN 71.134 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 3451900 41168 5706 27369 27386 -0.044199862415439384 SETSNWIAA 9 Unmodified _SETSNWIAA_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.729989 977.445425 0.29632 0.00014512 -0.10946 -5.3608E-05 0.18686 9.1511E-05 489.72994726472217 94.257 0.83781 90.114 89.72 90.558 -4.1435 -0.0085136 -0.00010128 NaN 71.134 61 23 4 NaN NaN NaN NaN 0 NaN NaN 0 6503900 41169 5706 27369 27386 -0.044199862415439384 SETTLKADP 9 Unmodified _SETTLKADP_ 0 0 0 REV__ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant REV__ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2457275390625 2 481.245472 960.476391 -0.063622 -3.0618E-05 0.5599 0.00026945 0.49628 0.00023883 481.2456572671339 17.91 0.39696 17.91 17.693 18.09 0 22 10 3 0 0 0 0.28246 1 2891 2891 0.40827 0 1 1663100 + 41170 12881 27370 27387 40577 40577 -0.0054283292729451205 SETVLAGPTS 10 Unmodified _SETVLAGPTS_ 0 0 0 ENSG00000198087|ENST00000359314|CD2AP ENSG00000198087|ENST00000359314|CD2AP ENSG00000198087|ENST00000359314|CD2AP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2447204589844 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 63.933 1 63.933 63.433 64.433 0 0 0 0 0.11575 1 12302 12302 41.84 7.4379 1 41171 7427 27371 27388 40578 40578 -0.0054283292729451205 SEVAAHLLQV 10 Unmodified _SEVAAHLLQV_ 0 0 0 ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36 ENSG00000163482|ENST00000295709|STK36 ENSG00000163482|ENST00000295709|STK36 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2872924804688 2 533.798206 1065.58186 0.37858 0.00020209 1.4664 0.00078275 1.845 0.00098483 533.798308541155 121.93 0.58168 117.4 117.08 117.66 -4.5305 32 15 4 0 0 0 0.46818 1 23463 23463 27.629 6.0918 1 1916900 41172 5432 27372 27389 40579 40579 0.05169127988983746 SEVAAYEF 8 Unmodified _SEVAAYEF_ 0 0 0 ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1 ENST00000433341.5_1_22:31795606-31819296:+|nuORF ENST00000433341.5_1_22:31795606-31819296:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386779785156 2 458.208358 914.402163 0.6684 0.00030627 -0.19762 -9.0551E-05 0.47078 0.00021572 458.2081724039608 102.25 0.62309 102.25 101.99 102.62 0 29 17 2 0 0 0 0.50973 1 20083 20083 40.449 14.107 1 1606300 41173 7009 27373 27390 40580 40580 -0.05846176018803817 SEVAAYEF 8 Unmodified _SEVAAYEF_ 0 0 0 ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1 ENST00000433341.5_1_22:31795606-31819296:+|nuORF ENST00000433341.5_1_22:31795606-31819296:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23828125 2 458.208358 914.402163 -0.064059 -2.9353E-05 0.25996 0.00011912 0.1959 8.9765E-05 458.20841553621693 106.97 0.55457 102.55 102.3 102.85 -4.4121 34 15 3 0 0 0 0.50973 1 20533 20533 24.674 6.5389 1 1739100 41174 7009 27373 27390 40581 40581 -0.05846176018803817 SEVAMASPN 9 Unmodified _SEVAMASPN_ 0 0 0 REV__ENSG00000170876|ENST00000306077|TMEM43 REV__ENSG00000170876|ENST00000306077|TMEM43 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7510681152344 2 453.205292 904.396032 0.28374 0.00012859 -0.58929 -0.00026707 -0.30555 -0.00013848 453.20512686876555 29.663 0.45016 29.663 29.434 29.884 0 14 12 2 0 0 0 0.65155 1 5336 5336 10.824 0 1 482030 + 41175 18185 27374 27391 40582 40582 -0.05999017521969563 SEVAMHSL 8 Unmodified _SEVAMHSL_ 0 0 0 ENSG00000100290|ENST00000216115|BIK ENSG00000100290|ENST00000216115|BIK ENSG00000100290|ENST00000216115|BIK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2273864746094 2 437.210378 872.406203 0.057166 2.4994E-05 -0.33645 -0.0001471 -0.27929 -0.00012211 437.2102604054874 55.238 0.88866 55.238 54.877 55.766 0 51 24 3 0 0 0 0.078324 2 10564 10564;10594 67.344 22.937 1 3375300 41176 1946 27375 27392 40583;40584 40583 -0.03510409796740532 SEVAMHSL 8 Unmodified _SEVAMHSL_ 0 0 0 ENSG00000100290|ENST00000216115|BIK ENSG00000100290|ENST00000216115|BIK ENSG00000100290|ENST00000216115|BIK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2186279296875 2 437.210378 872.406203 -0.23139 -0.00010117 0.083195 3.6374E-05 -0.14819 -6.4791E-05 437.21041690025874 57.939 0.76683 55.028 54.57 55.337 -2.9105 54 21 3 0 0 0 0.060254 1 11110 11110 85.357 24.967 1 4612400 41177 1946 27375 27392 40585 40585 -0.03510409796740532 SEVAMHSL 8 Unmodified _SEVAMHSL_ 0 0 0 ENSG00000100290|ENST00000216115|BIK ENSG00000100290|ENST00000216115|BIK ENSG00000100290|ENST00000216115|BIK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2275085449219 2 437.210378 872.406203 0.038645 1.6896E-05 -0.11884 -5.1957E-05 -0.080191 -3.506E-05 437.2103279110838 58.184 0.77163 54.933 54.503 55.274 -3.2517 53 21 3 0 0 0 0.37918 1 10749 10749 36.044 3.9272 1 3316600 41178 1946 27375 27392 40586 40586 -0.03510409796740532 SEVAMHSL 8 Unmodified _SEVAMHSL_ 0 0 0 ENSG00000100290|ENST00000216115|BIK ENSG00000100290|ENST00000216115|BIK ENSG00000100290|ENST00000216115|BIK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21746826171875 2 437.210378 872.406203 -0.093693 -4.0963E-05 -0.010098 -4.4148E-06 -0.10379 -4.5378E-05 437.2103999360333 58.271 1.6236 55.065 54.511 56.134 -3.2052 81 46 3 0 0 0 0.03671 2 10837 10837;10927 97.075 36.685 1 3672700 41179 1946 27375 27392 40587;40588 40587 -0.03510409796740532 SEVARTVAE 9 Unmodified _SEVARTVAE_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24163818359375 2 481.251089 960.487624 -0.25867 -0.00012448 0.69094 0.00033252 0.43227 0.00020803 481.2513701927699 57.753 0.51804 57.753 57.41 57.928 0 23 14 3 0 0 0 0.37087 1 11002 11002 0.40827 0.28045 1 1295000 + 41180 14106;24761 27376 27393 40589 40589 0.005799891668630153 SEVAVEIGL 9 Unmodified _SEVAVEIGL_ 0 0 0 REV__ENSG00000165757|ENST00000375377|JCAD REV__ENSG00000165757|ENST00000375377|JCAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23828125 2 458.752933 915.491313 -0.08364 -3.837E-05 0.43962 0.00020168 0.35598 0.00016331 458.75298480635644 107.26 0.68684 102.84 102.58 103.27 -4.4121 38 19 3 0 0 0 0.23667 1 20533 20533 26.884 0 1 3246300 + 41181 17800 27377 27394 40590 40590 0.030186589407207975 SEVAWFAF 8 Unmodified _SEVAWFAF_ 0 0 0 nc|ENSG00000100505|Q9C026|TRIM9 nc|ENSG00000100505|Q9C026|TRIM9 nc|ENSG00000100505|Q9C026|TRIM9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73846435546875 2 478.729261 955.443968 -0.14421 -6.9036E-05 1.0599 0.0005074 0.91567 0.00043836 478.7296160255107 108.83 0.55708 104.38 104.08 104.64 -4.4518 19 15 2 0 0 0 8448 1 20869 20869 0.30703 0 1 1217200 41182 12255 27378 27395 40591 40591 -0.03553575539626763 SEVCEDSITV 10 Unmodified _SEVCEDSITV_ 0 0 0 nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;ENSG00000119772|ENST00000321117|DNMT3A;ENST00000491288.5_1_2:25462067-25466797:-|nuORF;ENST00000474887.5_1_2:25458684-25467188:-|nuORF nc|ENSG00000119772|Q9Y6K1-2|DNMT3A nc|ENSG00000119772|Q9Y6K1-2|DNMT3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2811279296875 2 541.239529 1080.46451 0.23134 0.00012521 -0.53764 -0.00029099 -0.3063 -0.00016578 541.2392281178409 39.282 0.52294 36.877 36.58 37.103 -2.4049 24 14 2 0 0 0 0.75233 1 6996 6996 22.736 0 1 1087600 41183 3102 27379 27396 40592 40592 -0.07250817732801806 SEVEKKGP 8 Unmodified _SEVEKKGP_ 0 0 0 HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant;ENSG00000103657|ENST00000443617|HERC1 HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2353820800781 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 55.205 1 55.205 54.705 55.705 0 0 0 0 0.21486 1 10534 10534 9.3474 0.75416 1 41184 2202 27380 27397 40593 40593 0.01901505626483413 SEVESPAVP 9 Unmodified _SEVESPAVP_ 0 0 0 MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant;MCM10|p.N701Tfs*35|2|0.27|ENSG00000065328|chr10:13197741-13197741|A/-|frameshift_variant;ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10;ENST00000459751.1_1_10:13234503-13237290:+|nuORF MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.228515625 2 457.726915 913.439277 -0.05142 -2.3536E-05 0.36 0.00016478 0.30858 0.00014125 457.7270133329668 64.164 1.0023 64.164 63.749 64.751 0 44 28 2 0 0 0 0.12183 3 12336 12292;12336;12380 48.346 10.954 1 2165600 41185 1355 27381 27398 40594;40595;40596 40595 -0.020905044730398004 SEVESPAVP 9 Unmodified _SEVESPAVP_ 0 0 0 MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant;MCM10|p.N701Tfs*35|2|0.27|ENSG00000065328|chr10:13197741-13197741|A/-|frameshift_variant;ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10;ENST00000459751.1_1_10:13234503-13237290:+|nuORF MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2281188964844 2 457.726915 913.439277 -0.13738 -6.2881E-05 0.052137 2.3864E-05 -0.085239 -3.9016E-05 457.72692808569394 67.591 1.1812 64.482 63.72 64.901 -3.1086 51 33 2 0 0 0 0.026587 3 13086 13040;13086;13135 85.357 23.999 1 1773500 41186 1355 27381 27398 40597;40598;40599 40598 -0.020905044730398004 SEVESPAVP 9 Unmodified _SEVESPAVP_ 0 0 0 MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant;MCM10|p.N701Tfs*35|2|0.27|ENSG00000065328|chr10:13197741-13197741|A/-|frameshift_variant;ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10;ENST00000459751.1_1_10:13234503-13237290:+|nuORF MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.238525390625 2 457.726915 913.439277 0.25815 0.00011816 -0.1433 -6.5593E-05 0.11485 5.2568E-05 457.7267831604111 67.767 1.0455 64.27 63.822 64.868 -3.4965 43 29 2 0 0 0 0.060164 4 12746 12673;12722;12746;12774 67.344 18.998 1 1506400 41187 1355 27381 27398 40600;40601;40602;40603 40602 -0.020905044730398004 SEVESPAVP 9 Unmodified _SEVESPAVP_ 0 0 0 MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant;MCM10|p.N701Tfs*35|2|0.27|ENSG00000065328|chr10:13197741-13197741|A/-|frameshift_variant;ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10;ENST00000459751.1_1_10:13234503-13237290:+|nuORF MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2286071777344 2 457.726915 913.439277 0.31691 0.00014506 -0.12624 -5.7786E-05 0.19066 8.7272E-05 457.7267762312894 67.716 1.2851 64.389 63.791 65.076 -3.3268 64 36 2 0 0 0 0.026587 4 12749 12702;12749;12799;12851 85.357 21.12 1 1461800 41188 1355 27381 27398 40604;40605;40606;40607 40605 -0.020905044730398004 SEVFWYHL 8 Unmodified _SEVFWYHL_ 0 0 0 REV__CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant REV__CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2630004882812 2 540.761092 1079.50763 0.22424 0.00012126 2.3434 0.0012672 2.5676 0.0013885 540.7622290382006 100.51 0.48262 96.349 96.081 96.564 -4.1594 17 13 2 0 0 0 0.69085 1 19777 19777 15.768 0 1 1239000 + 41189 13608 27382 27399 40608 40608 -0.028942151025376006 SEVFWYHL 8 Unmodified _SEVFWYHL_ 0 0 0 REV__CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant REV__CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2800903320312 2 540.761092 1079.50763 0.22424 0.00012126 2.3434 0.0012672 2.5676 0.0013885 540.7622290382006 100.51 0.48262 96.349 96.081 96.564 -4.1594 17 13 2 0 0 0 0.97994 1 19792 19792 15.768 0 1 1239000 + 41190 13608 27382 27399 40609 40609 -0.028942151025376006 SEVGDTQVVVF 11 Unmodified _SEVGDTQVVVF_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF;nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2734375 2 590.298236 1178.58192 0.26646 0.00015729 -0.76308 -0.00045045 -0.49662 -0.00029315 590.2987278854897 139.58 0.31662 134.73 134.6 134.91 -4.8492 9 8 2 0 0 0 0.5544 2 26902 26882;26902 20.415 2.2682 1 1010100 41191 5083 27383 27400 40610;40611 40611 -0.00022916801685823884 SEVGKLLSA 9 Unmodified _SEVGKLLSA_ 0 0 0 ENST00000468778.5_1_2:74650926-74652825:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54 ENST00000468778.5_1_2:74650926-74652825:+|nuORF ENST00000468778.5_1_2:74650926-74652825:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7660827636719 2 452.260925 902.507297 0.4187 0.00018936 -0.34889 -0.00015779 0.069812 3.1573E-05 452.26072078772563 83.264 1.3582 83.264 82.568 83.927 0 85 38 4 0 0 0 0.41266 1 16253 16253 24.991 2.2547 1 82477000 41192 991 27384 27401 40612 40612 0.05214365177619129 SEVGPFSSF 9 Unmodified _SEVGPFSSF_ 0 0 0 REV__ECM2|p.C103Wfs*2|1|0.24|ENSG00000106823|chr9:92517856-92517859|CAAA/-|frameshift_variant REV__ECM2|p.C103Wfs*2|1|0.24|ENSG00000106823|chr9:92517856-92517859|CAAA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.720947265625 2 478.721633 955.428712 -0.082265 -3.9382E-05 -2.7142 -0.0012994 -2.7965 -0.0013387 478.7199892929889 114.15 0.57201 114.15 113.94 114.51 0 25 15 2 0 0 0 0.060164 2 22453 22429;22453 67.344 3.1075 1 1875000 + 41193 13772 27385 27402 40613;40614 40614 -0.05078487127468634 SEVGPFSSF 9 Unmodified _SEVGPFSSF_ 0 0 0 REV__ECM2|p.C103Wfs*2|1|0.24|ENSG00000106823|chr9:92517856-92517859|CAAA/-|frameshift_variant REV__ECM2|p.C103Wfs*2|1|0.24|ENSG00000106823|chr9:92517856-92517859|CAAA/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.721633 955.428712 -0.082265 -3.9382E-05 -2.7142 -0.0012994 -2.7965 -0.0013387 478.7199892929889 114.15 0.57201 114.15 113.94 114.51 0 -0.09292 -0.00025539 NaN 67.344 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1875000 + 41194 13772 27385 27402 -0.05078487127468634 SEVGPFSSF 9 Unmodified _SEVGPFSSF_ 0 0 0 REV__ECM2|p.C103Wfs*2|1|0.24|ENSG00000106823|chr9:92517856-92517859|CAAA/-|frameshift_variant REV__ECM2|p.C103Wfs*2|1|0.24|ENSG00000106823|chr9:92517856-92517859|CAAA/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.721633 955.428712 0.27569 0.00013198 -2.4174 -0.0011573 -2.1417 -0.0010253 478.7203546949467 118.82 0.744 114.32 113.93 114.68 -4.502 0.076958 2.879E-05 NaN 67.344 26 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2232800 + 41195 13772 27385 27402 -0.05078487127468634 SEVGPFSSF 9 Unmodified _SEVGPFSSF_ 0 0 0 REV__ECM2|p.C103Wfs*2|1|0.24|ENSG00000106823|chr9:92517856-92517859|CAAA/-|frameshift_variant REV__ECM2|p.C103Wfs*2|1|0.24|ENSG00000106823|chr9:92517856-92517859|CAAA/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.721633 955.428712 0.49554 0.00023723 -2.5754 -0.0012329 -2.0798 -0.00099566 478.72029983329213 118.88 1.0363 114.27 113.7 114.74 -4.6106 0.02274 -0.00012243 NaN 67.344 45 28 2 NaN NaN NaN NaN 0 NaN NaN 0 3116000 + 41196 13772 27385 27402 -0.05078487127468634 SEVGPFSSF 9 Unmodified _SEVGPFSSF_ 0 0 0 REV__ECM2|p.C103Wfs*2|1|0.24|ENSG00000106823|chr9:92517856-92517859|CAAA/-|frameshift_variant REV__ECM2|p.C103Wfs*2|1|0.24|ENSG00000106823|chr9:92517856-92517859|CAAA/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.721633 955.428712 0.41591 0.0001991 -2.2356 -0.0010702 -1.8196 -0.0008711 478.7203629956438 118.65 0.77334 114.24 113.89 114.66 -4.4088 -0.0067777 0.00020293 NaN 67.344 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1530900 + 41197 13772 27385 27402 -0.05078487127468634 SEVGPVVSF 9 Unmodified _SEVGPVVSF_ 0 0 0 nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2 nc|ENSG00000101811|P33240-2|CSTF2 nc|ENSG00000101811|P33240-2|CSTF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2408142089844 2 460.739825 919.465098 -0.0042922 -1.9776E-06 0.30015 0.00013829 0.29586 0.00013631 460.7398957045436 133.04 0.85538 128.18 127.85 128.7 -4.8527 51 23 3 0 0 0 0.026338 1 25540 25540 100.37 45.598 1 7882900 41198 2085 27386 27403 40615 40615 0.002143897692462815 SEVGPVVSF 9 Unmodified _SEVGPVVSF_ 0 0 0 nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2 nc|ENSG00000101811|P33240-2|CSTF2 nc|ENSG00000101811|P33240-2|CSTF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.739825 919.465098 0.21162 9.7501E-05 0.1518 6.9939E-05 0.36342 0.00016744 460.73982600207916 128.05 0.7388 128.05 127.72 128.46 0 -0.10488 -9.918E-05 NaN 164.52 33 20 2 NaN NaN NaN NaN 0 NaN NaN 0 8006100 41199 2085 27386 27403 0.002143897692462815 SEVGPVVSF 9 Unmodified _SEVGPVVSF_ 0 0 0 nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2 nc|ENSG00000101811|P33240-2|CSTF2 nc|ENSG00000101811|P33240-2|CSTF2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.739825 919.465098 -0.094632 -4.3601E-05 0.40829 0.00018811 0.31365 0.00014451 460.7399525736199 132.84 0.77884 128.2 127.84 128.62 -4.6399 0.043727 0.00013717 NaN 164.52 49 21 3 NaN NaN NaN NaN 0 NaN NaN 0 11412000 41200 2085 27386 27403 0.002143897692462815 SEVGPVVSF 9 Unmodified _SEVGPVVSF_ 0 0 0 nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2 nc|ENSG00000101811|P33240-2|CSTF2 nc|ENSG00000101811|P33240-2|CSTF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 460.739825 919.465098 0.19513 8.9905E-05 0.22456 0.00010346 0.41969 0.00019337 460.73985589582946 132.99 0.95781 128.19 127.76 128.72 -4.799 0.033753 -3.2131E-05 NaN 164.52 56 26 3 NaN NaN NaN NaN 0 NaN NaN 0 8588300 41201 2085 27386 27403 0.002143897692462815 SEVGPWLQ 8 Unmodified _SEVGPWLQ_ 0 0 0 nc|ENSG00000119121|Q9BX84-4|TRPM6;TRPM6|p.E1956Kfs*25|1|0.33|ENSG00000119121|chr9:74728308-74728308|C/-|frameshift_variant;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6 nc|ENSG00000119121|Q9BX84-4|TRPM6 nc|ENSG00000119121|Q9BX84-4|TRPM6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2332763671875 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 33.473 1 33.473 32.973 33.973 0 0 0 0 0.20462 1 6110 6110 21.747 0.87544 1 41202 3059 27387 27404 40616 40616 -0.010864770279454206 SEVGSQLLS 9 Unmodified _SEVGSQLLS_ 0 0 0 ENST00000593232.5_1_19:33134141-33134495:-|nuORF ENST00000593232.5_1_19:33134141-33134495:-|nuORF ENST00000593232.5_1_19:33134141-33134495:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2481689453125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 75.581 1 71.858 71.358 72.358 -3.7227 0 0 0 0.22962 1 14298 14298 14.838 2.3067 1 41203 11642 27388 27405 40617 40617 0.0033318441828669165 SEVGSQLLS 9 Unmodified _SEVGSQLLS_ 0 0 0 ENST00000593232.5_1_19:33134141-33134495:-|nuORF ENST00000593232.5_1_19:33134141-33134495:-|nuORF ENST00000593232.5_1_19:33134141-33134495:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2408142089844 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 132.96 1 128.11 127.61 128.61 -4.8527 0 0 0 0.20628 1 25540 25540 21.747 0.87544 1 41204 11642 27388 27405 40618 40618 0.0033318441828669165 SEVGWTSNP 9 Unmodified _SEVGWTSNP_ 0 0 0 nc|ENSG00000101639|Q8TEP8-1|CEP192;CEP192|p.R2464Kfs*5|1|0.13|ENSG00000101639|chr18:13116476-13116477|-/AAATCCA|frameshift_variant;ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-2|CEP192;CEP192|p.N1674Kfs*6|1|0.25|ENSG00000101639|chr18:13069142-13069143|-/A|frameshift_variant;CEP192|p.K1891Nfs*8|1|0.19|ENSG00000101639|chr18:13087068-13087068|A/-|frameshift_variant;ENST00000513432.5_1_18:13030586-13057756:+|nuORF nc|ENSG00000101639|Q8TEP8-1|CEP192 nc|ENSG00000101639|Q8TEP8-1|CEP192 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2633361816406 2 488.722164 975.429775 -0.16916 -8.2672E-05 0.3296 0.00016108 0.16044 7.841E-05 488.7222996780578 39.141 1.2969 36.592 36.157 37.454 -2.5491 129 36 5 0 0 0 0.30618 1 7318 7318 31.268 8.1199 1 177600000 41205 491 27389 27406 40619 40619 -0.05892272758569561 SEVIFIDP 8 Unmodified _SEVIFIDP_ 0 0 0 REV__HTR3C|p.W121C|1|0.33|ENSG00000178084|chr3:184056260-184056260|G/T|missense_variant REV__HTR3C|p.W121C|1|0.33|ENSG00000178084|chr3:184056260-184056260|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2489318847656 2 460.242201 918.469849 NaN NaN NaN NaN NaN NaN NaN 37.486 1 35.017 34.517 35.517 -2.4688 0 0 0 0.20896 1 6924 6924 18.135 0 1 + 41206 18587 27390 27407 40620 40620 0.0073527391199377234 SEVIKDIC 8 Unmodified _SEVIKDIC_ 0 0 0 tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1 tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1 tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7596130371094 2 453.733686 905.452819 0.34776 0.00015779 -0.21445 -9.7302E-05 0.13331 6.0486E-05 453.733555975198 84.344 0.87744 84.344 83.891 84.769 0 38 24 2 0 0 0 0.89552 1 16359 16359 19.439 5.9311 1 3198500 41207 26188 27391 27408 40621 40621 -0.003689699654728429 SEVKEKPY 8 Unmodified _SEVKEKPY_ 0 0 0 REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1 REV__tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2574768066406 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 77.978 1 77.978 77.478 78.478 0 0 0 0 0.22676 1 15171 15171 0.25148 0 1 + 41208 25110 27392 27409 40622 40622 0.012100613149982564 SEVKIQEF 8 Unmodified _SEVKIQEF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2585754394531 2 490.258382 978.502212 0.53092 0.00026029 -0.24125 -0.00011827 0.28967 0.00014202 490.25819333195915 81.048 0.81431 81.048 80.591 81.406 0 55 22 3 0 0 0 8.1634E-29 4 15759 15716;15757;15759;15805 193.29 71.987 1 16036000 41209 1162 27393 27410 40623;40624;40625;40626 40625 0.012100613150096251 SEVKIQEF 8 Unmodified _SEVKIQEF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25848388671875 2 490.258382 978.502212 0.080565 3.9498E-05 0.26726 0.00013103 0.34783 0.00017053 490.2584475075497 84.485 0.86184 80.821 80.333 81.195 -3.6641 76 24 4 0 0 0 8.1634E-29 6 16521 16470;16473;16517;16521;16563;16567 193.29 75.425 1 21290000 41210 1162 27393 27410 40627;40628;40629;40630;40631;40632 40630 0.012100613150096251 SEVKIQEF 8 Unmodified _SEVKIQEF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25836181640625 2 490.258382 978.502212 0.27368 0.00013417 0.07489 3.6715E-05 0.34857 0.00017089 490.2583250824102 84.674 0.86313 80.764 80.353 81.217 -3.9093 71 24 4 0 0 0 8.1634E-29 4 16077 16074;16077;16126;16171 193.29 74.4 1 14726000 41211 1162 27393 27410 40633;40634;40635;40636 40634 0.012100613150096251 SEVKIQEF 8 Unmodified _SEVKIQEF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2584228515625 2 490.258382 978.502212 -0.25609 -0.00012555 0.54053 0.000265 0.28444 0.00013945 490.2585956502474 84.531 0.91068 80.819 80.346 81.257 -3.7117 66 25 3 0 0 0 3.2289000000000005E-19 7 16120 16076;16078;16119;16120;16166;16198;16209 179.17 71.987 1 21562000 41212 1162 27393 27410 40637;40638;40639;40640;40641;40642;40643 40640 0.012100613150096251 SEVMRKKAQ 9 Unmodified _SEVMRKKAQ_ 0 0 0 REV__ENST00000591541.2_1_18:43319470-43329913:+|nuORF REV__ENST00000591541.2_1_18:43319470-43329913:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2026672363281 3 359.534214 1075.58081 -0.37618 -0.00013525 0.024298 8.7359E-06 -0.35188 -0.00012651 359.5343027019554 70.581 0.66999 67.332 66.931 67.601 -3.2492 46 18 3 0 0 0 0.67174 1 13764 13764 8.1555 1.9497 1 3609700 + 41213 16630 27394 27411 40644 40644 0.046045903484582595 SEVNIEKIN 9 Unmodified _SEVNIEKIN_ 0 0 0 DNAH5|p.P3316Lfs*22|3|0.33|ENSG00000039139|chr5:13766130-13766130|G/-|frameshift_variant;DNAH5|p.I4068*|1|0.07|ENSG00000039139|chr5:13721077-13721077|T/-|frameshift_variant;DNAH5|p.F4486Lfs*7|2|0.23|ENSG00000039139|chr5:13701317-13701317|A/-|frameshift_variant;ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.I1855Sfs*16|1|0.33|ENSG00000039139|chr5:13841052-13841052|T/-|frameshift_variant;DNAH5|p.G1976Efs*78|3|0.44|ENSG00000039139|chr5:13830731-13830731|C/-|frameshift_variant;DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant;DNAH5|p.L1467Wfs*3|1|0.23|ENSG00000039139|chr5:13864593-13864593|A/-|frameshift_variant DNAH5|p.P3316Lfs*22|3|0.33|ENSG00000039139|chr5:13766130-13766130|G/-|frameshift_variant DNAH5|p.P3316Lfs*22|3|0.33|ENSG00000039139|chr5:13766130-13766130|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6795043945312 2 523.279846 1044.54514 NaN NaN NaN NaN NaN NaN NaN 82.081 1 82.081 81.581 82.581 0 0 0 0 0.23508 1 15990 15990 11.495 0.67078 1 41214 864 27395 27412 40645 40645 0.024648313724583204 SEVPAVSQH 9 Unmodified _SEVPAVSQH_ 0 0 0 ENSG00000134982|ENST00000257430|APC;APC|p.E1353Nfs*62|1|0.5|ENSG00000134982|chr5:112839649-112839649|T/-|frameshift_variant;APC|p.L1488Ffs*17|1|0.27|ENSG00000134982|chr5:112840057-112840063|TATTACA/-|frameshift_variant;APC|p.Q1429Dfs*45|1|0.42|ENSG00000134982|chr5:112839875-112839876|-/GG|frameshift_variant;APC|p.S1465Rfs*9|3|0.3|ENSG00000134982|chr5:112839978-112839979|-/AG|frameshift_variant;APC|p.K1454Lfs*20|1|0.81|ENSG00000134982|chr5:112839952-112839953|-/TT|frameshift_variant;APC|p.S1436Rfs*38|1|0.42|ENSG00000134982|chr5:112839899-112839900|-/AG|frameshift_variant;APC|p.S1436Vfs*37|1|0.37|ENSG00000134982|chr5:112839899-112839899|A/-|frameshift_variant;APC|p.S1421Vfs*52|1|0.51|ENSG00000134982|chr5:112839855-112839855|A/-|frameshift_variant;APC|p.S1421Mfs*52|1|0.67|ENSG00000134982|chr5:112839856-112839856|G/-|frameshift_variant;APC|p.R1435Efs*38|1|0.41|ENSG00000134982|chr5:112839897-112839897|A/-|frameshift_variant;APC|p.N1455Ifs*18|1|0.15|ENSG00000134982|chr5:112839954-112839954|A/-|frameshift_variant;APC|p.P1453Lfs*20|2|0.29|ENSG00000134982|chr5:112839951-112839951|C/-|frameshift_variant;APC|p.A1446Vfs*27|1|0.38|ENSG00000134982|chr5:112839931-112839931|C/-|frameshift_variant;APC|p.M1431Cfs*42|1|0.4|ENSG00000134982|chr5:112839883-112839883|C/-|frameshift_variant;APC|p.P1439Lfs*34|4|0.34|ENSG00000134982|chr5:112839909-112839909|C/-|frameshift_variant;APC|p.P1442Lfs*31|1|0.41|ENSG00000134982|chr5:112839918-112839918|C/-|frameshift_variant;APC|p.E1464Vfs*8|2|0.27|ENSG00000134982|chr5:112839979-112839982|AGAG/-|frameshift_variant;APC|p.Q1447Sfs*24|1|0.77|ENSG00000134982|chr5:112839931-112839937|CTCAAAC/-|frameshift_variant;APC|p.R1435Lfs*31|1|0.38|ENSG00000134982|chr5:112839896-112839917|CAGAAGTAAAACACCTCCACCA/-|frameshift_variant;APC|p.I1417Hfs*6|1|0.53|ENSG00000134982|chr5:112839839-112839840|-/G|frameshift_variant;APC|p.S1419*|1|0.33|ENSG00000134982|chr5:112839844-112839845|-/TA|frameshift_variant;APC|p.V1414Efs*5|1|0.58|ENSG00000134982|chr5:112839835-112839835|T/-|frameshift_variant;APC|p.S1355Ffs*62|1|0.37|ENSG00000134982|chr5:112839653-112839654|-/TTTTT|frameshift_variant;APC|p.S1403Mfs*13|1|0.05|ENSG00000134982|chr5:112839799-112839818|CCAGCTCCGTTCAGAGTGAA/-|frameshift_variant;APC|p.S1407Vfs*8|1|0.39|ENSG00000134982|chr5:112839812-112839812|G/-|frameshift_variant;APC|p.S1398Ifs*17|1|0.86|ENSG00000134982|chr5:112839787-112839787|G/-|frameshift_variant;APC|p.I1401Mfs*14|1|0.73|ENSG00000134982|chr5:112839796-112839796|T/-|frameshift_variant;APC|p.S1355Lfs*60|2|0.6|ENSG00000134982|chr5:112839654-112839654|T/-|frameshift_variant;APC|p.T1487Yfs*18|1|0.1|ENSG00000134982|chr5:112840051-112840057|ATACTTT/-|frameshift_variant;APC|p.D1486Ifs*21|2|0.76|ENSG00000134982|chr5:112840049-112840049|T/-|frameshift_variant;APC|p.A1492Pfs*15|1|0.69|ENSG00000134982|chr5:112840068-112840068|G/-|frameshift_variant;APC|p.N1531Rfs*31|1|0.18|ENSG00000134982|chr5:112840186-112840195|ATGACAATGG/-|frameshift_variant;nc|ENSG00000134982|P25054-3|APC;nc|ENSG00000134982|P25054-2|APC;APC|p.E1576Kfs*74|1|0.61|ENSG00000134982|chr5:112840319-112840319|A/-|frameshift_variant;APC|p.S1581Lfs*69|1|0.34|ENSG00000134982|chr5:112840333-112840333|T/-|frameshift_variant;APC|p.I1580Lfs*69|1|0.59|ENSG00000134982|chr5:112840330-112840333|TTAT/-|frameshift_variant;APC|p.C1578Mfs*13|1|0.68|ENSG00000134982|chr5:112840323-112840324|-/A|frameshift_variant;APC|p.I1580Nfs*11|1|0.36|ENSG00000134982|chr5:112840331-112840332|-/A|frameshift_variant;APC|p.I1574Yfs*2|1|0.36|ENSG00000134982|chr5:112840312-112840312|A/-|frameshift_variant;APC|p.N1535Mfs*30|1|0.28|ENSG00000134982|chr5:112840194-112840194|G/-|frameshift_variant;APC|p.E1544Nfs*21|1|0.05|ENSG00000134982|chr5:112840220-112840220|T/-|frameshift_variant;APC|p.T1556Lfs*9|1|0.61|ENSG00000134982|chr5:112840255-112840255|A/-|frameshift_variant;APC|p.E1552Qfs*12|1|0.31|ENSG00000134982|chr5:112840247-112840250|AGAG/-|frameshift_variant;APC|p.T1556Nfs*3|11|0.46|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;APC|p.L1488Yfs*19|2|0.41|ENSG00000134982|chr5:112840055-112840055|T/-|frameshift_variant;APC|p.I1557*|1|0.43|ENSG00000134982|chr5:112840262-112840263|TA/-|frameshift_variant;APC|p.H1490Nfs*25|1|0.21|ENSG00000134982|chr5:112840059-112840060|-/TAAA|frameshift_variant;APC|p.T1496Kfs*19|1|0.17|ENSG00000134982|chr5:112840075-112840076|-/AAGT|frameshift_variant;APC|p.S1501Ffs*13|1|0.5|ENSG00000134982|chr5:112840091-112840092|-/T|frameshift_variant;APC|p.H1490Tfs*24|1|0.23|ENSG00000134982|chr5:112840060-112840061|-/A|frameshift_variant;APC|p.A1492Cfs*22|2|0.29|ENSG00000134982|chr5:112840063-112840064|-/T|frameshift_variant;APC|p.L1489Kfs*19|1|0.34|ENSG00000134982|chr5:112840058-112840074|ATTACATTTTGCCACGG/-|frameshift_variant;APC|p.H1490Yfs*18|1|0.48|ENSG00000134982|chr5:112840059-112840060|-/TA|frameshift_variant;APC|p.L1489Yfs*18|3|0.26|ENSG00000134982|chr5:112840059-112840059|T/-|frameshift_variant;APC|p.F1491Lfs*16|1|0.27|ENSG00000134982|chr5:112840064-112840064|T/-|frameshift_variant;APC|p.E1494Kfs*13|1|0.84|ENSG00000134982|chr5:112840073-112840073|G/-|frameshift_variant;APC|p.T1493Rfs*14|2|0.34|ENSG00000134982|chr5:112840069-112840069|C/-|frameshift_variant;APC|p.E1397Gfs*18|1|0.76|ENSG00000134982|chr5:112839784-112839784|A/-|frameshift_variant;APC|p.S1411Rfs*4|1|0.42|ENSG00000134982|chr5:112839827-112839827|T/-|frameshift_variant;APC|p.S1400*|1|0.45|ENSG00000134982|chr5:112839793-112839793|C/-|frameshift_variant;APC|p.V1390Ffs*6|1|0.39|ENSG00000134982|chr5:112839757-112839758|-/TTCT|frameshift_variant;APC|p.C1387*|1|0.31|ENSG00000134982|chr5:112839749-112839750|-/AGAT|frameshift_variant;APC|p.M1383Ifs*3|1|0.64|ENSG00000134982|chr5:112839741-112839742|-/T|frameshift_variant;APC|p.A1351Gfs*3|1|0.81|ENSG00000134982|chr5:112839644-112839645|-/G|frameshift_variant;APC|p.P1330Qfs*11|1|0.22|ENSG00000134982|chr5:112839583-112839584|CT/-|frameshift_variant;APC|p.L1337Pfs*4|1|0.82|ENSG00000134982|chr5:112839604-112839605|TG/-|frameshift_variant;APC|p.V1414*|4|0.37|ENSG00000134982|chr5:112839833-112839833|G/-|frameshift_variant ENSG00000134982|ENST00000257430|APC ENSG00000134982|ENST00000257430|APC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7422180175781 2 477.237981 952.461409 -0.44171 -0.0002108 0.53449 0.00025508 0.092782 4.4279E-05 477.23809120058013 23.222 0.60823 21.433 21.091 21.699 -1.7886 55 17 4 0 0 0 0.62102 1 3744 3744 11.64 0 1 2842700 41215 181 27396 27413 40646 40646 -0.016722800046181874 SEVPPARSA 9 Unmodified _SEVPPARSA_ 0 0 0 PHLPP1|p.N1186Tfs*10|1|0.14|ENSG00000081913|chr18:62963464-62963464|A/-|frameshift_variant;PHLPP1|p.T1236Nfs*38|2|0.39|ENSG00000081913|chr18:62972653-62972654|-/A|frameshift_variant;ENSG00000081913|ENST00000262719|PHLPP1 PHLPP1|p.N1186Tfs*10|1|0.14|ENSG00000081913|chr18:62963464-62963464|A/-|frameshift_variant PHLPP1|p.N1186Tfs*10|1|0.14|ENSG00000081913|chr18:62963464-62963464|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22064208984375 2 457.240524 912.466495 -0.37181 -0.00017001 0.47842 0.00021875 0.10662 4.8749E-05 457.24067566847606 19.485 2.1779 18.16 16.943 19.121 -1.3251 92 61 2 0 0 0 0.61228 1 2930 2930 12.241 1.4167 1 731490 41216 1630 27397 27414 40647 40647 0.0067602385800000775 SEVPVKLHR 9 Unmodified _SEVPVKLHR_ 0 0 0 ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant;MXRA5|p.S828Qfs*8|1|0.12|ENSG00000101825|chrX:3323204-3323204|G/-|frameshift_variant ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2862548828125 2 532.81419 1063.61383 0.41879 0.00022314 0.39002 0.00020781 0.80881 0.00043094 532.8140030202769 74.113 1.2915 70.519 70.116 71.407 -3.594 50 36 2 0 0 0 0.68435 1 14239 14239 7.2892 0 1 3557500 41217 2087 27398 27415 40648 40648 0.08456540462793782 SEVQYIQEA 9 Unmodified _SEVQYIQEA_ 0 0 0 nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1;ENST00000461859.1_1_1:151535003-151537177:+|nuORF;TUFT1|p.V176Cfs*59|1|0.36|ENSG00000143367|chr1:151569698-151569707|GACGGTGCAG/-|frameshift_variant nc|ENSG00000143367|Q9NNX1-3|TUFT1 nc|ENSG00000143367|Q9NNX1-3|TUFT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2864379882812 2 533.756204 1065.49785 -0.016955 -9.0499E-06 0.52253 0.0002789 0.50557 0.00026985 533.7563345016825 71.278 0.76682 71.278 70.903 71.669 0 46 21 3 0 0 0 0.0019732 1 13815 13815 117.76 38.164 1 15476000 41218 4476 27399 27416 40649 40649 -0.03227447898552782 SEVQYIQEA 9 Unmodified _SEVQYIQEA_ 0 0 0 nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1;ENST00000461859.1_1_1:151535003-151537177:+|nuORF;TUFT1|p.V176Cfs*59|1|0.36|ENSG00000143367|chr1:151569698-151569707|GACGGTGCAG/-|frameshift_variant nc|ENSG00000143367|Q9NNX1-3|TUFT1 nc|ENSG00000143367|Q9NNX1-3|TUFT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2762451171875 2 533.756204 1065.49785 0.014552 7.767E-06 1.485 0.00079262 1.4995 0.00080039 533.7561221948728 74.812 1.0895 71.448 70.777 71.867 -3.3643 62 30 3 0 0 0 0.19141 1 14654 14654 49.554 18.286 1 13344000 41219 4476 27399 27416 40650 40650 -0.03227447898552782 SEVQYIQEA 9 Unmodified _SEVQYIQEA_ 0 0 0 nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1;ENST00000461859.1_1_1:151535003-151537177:+|nuORF;TUFT1|p.V176Cfs*59|1|0.36|ENSG00000143367|chr1:151569698-151569707|GACGGTGCAG/-|frameshift_variant nc|ENSG00000143367|Q9NNX1-3|TUFT1 nc|ENSG00000143367|Q9NNX1-3|TUFT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2860717773438 2 533.756204 1065.49785 0.34444 0.00018385 -0.030236 -1.6138E-05 0.31421 0.00016771 533.7561004266971 75.124 0.80154 71.523 71.086 71.888 -3.6016 48 22 3 0 0 0 0.0087973 2 14287 14254;14287 107.1 27.659 1 11270000 41220 4476 27399 27416 40651;40652 40652 -0.03227447898552782 SEVQYIQEA 9 Unmodified _SEVQYIQEA_ 0 0 0 nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1;ENST00000461859.1_1_1:151535003-151537177:+|nuORF;TUFT1|p.V176Cfs*59|1|0.36|ENSG00000143367|chr1:151569698-151569707|GACGGTGCAG/-|frameshift_variant nc|ENSG00000143367|Q9NNX1-3|TUFT1 nc|ENSG00000143367|Q9NNX1-3|TUFT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 533.756204 1065.49785 0.49649 0.000265 -0.2288 -0.00012212 0.26769 0.00014288 533.7560615635001 75.214 0.76891 71.492 71.093 71.862 -3.7227 0.056413 -0.00028904 NaN 117.76 51 21 3 NaN NaN NaN NaN 0 NaN NaN 0 11602000 41221 4476 27399 27416 -0.03227447898552782 SEVSCRNLVPV 11 Unmodified _SEVSCRNLVPV_ 0 0 0 SP140L|p.D94V|1|0.15|ENSG00000185404|chr2:230358974-230358974|A/T|missense_variant SP140L|p.D94V|1|0.15|ENSG00000185404|chr2:230358974-230358974|A/T|missense_variant SP140L|p.D94V|1|0.15|ENSG00000185404|chr2:230358974-230358974|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2762451171875 2 601.81353 1201.61251 1.1385 0.00068517 -0.14928 -8.9839E-05 0.98923 0.00059533 601.8122835338802 153.1 0.21649 148.34 148.19 148.4 -4.7684 8 5 3 0 0 0 0.70375 1 30417 30417 11.495 1.4208 1 887100 41222 25770 27400 27417 40653 40653 0.019765383117146484 SEVTGGPKGE 10 Unmodified _SEVTGGPKGE_ 0 0 0 REV__nc|ENSG00000138231|Q9UK59-2|DBR1 REV__nc|ENSG00000138231|Q9UK59-2|DBR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23651123046875 2 480.735271 959.45599 -0.014785 -7.1076E-06 0.04369 2.1003E-05 0.028905 1.3896E-05 480.73530433295196 33.557 0.73535 33.557 33.059 33.795 0 33 20 2 0 0 0 0.6091 1 6163 6163 21.537 0 1 1148300 + 41223 16449 27401 27418 40654 40654 -0.025360035870789943 SEVTLLVGPR 10 Unmodified _SEVTLLVGPR_ 0 0 0 FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant;FRMPD4|p.S1105Vfs*3|1|0.29|ENSG00000169933|chrX:12718134-12718134|A/-|frameshift_variant;FRMPD4|p.L1210Pfs*39|1|0.05|ENSG00000169933|chrX:12718454-12718455|-/CT|frameshift_variant;nc|ENSG00000169933|Q14CM0|FRMPD4;ENSG00000169933|ENST00000675598|FRMPD4;FRMPD4|p.C618Vfs*8|1|0.19|ENSG00000169933|chrX:12716306-12716306|C/-|frameshift_variant;FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0727844238281 3 357.544996 1069.61316 -0.2686 -9.6036E-05 1.3976 0.0004997 1.129 0.00040367 357.54540266547525 33.452 0.45555 31.135 30.903 31.358 -2.3175 22 12 3 0 0 0 0.91149 1 6077 6077 1.7423 0.67081 1 973590 41224 6023 27402 27419 40655 40655 0.08113701023080466 SEVTLLVGPR 10 Unmodified _SEVTLLVGPR_ 0 0 0 FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant;FRMPD4|p.S1105Vfs*3|1|0.29|ENSG00000169933|chrX:12718134-12718134|A/-|frameshift_variant;FRMPD4|p.L1210Pfs*39|1|0.05|ENSG00000169933|chrX:12718454-12718455|-/CT|frameshift_variant;nc|ENSG00000169933|Q14CM0|FRMPD4;ENSG00000169933|ENST00000675598|FRMPD4;FRMPD4|p.C618Vfs*8|1|0.19|ENSG00000169933|chrX:12716306-12716306|C/-|frameshift_variant;FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 357.544996 1069.61316 -0.23401 -8.3668E-05 1.3123 0.00046922 1.0783 0.00038555 357.5454462516707 31.08 0.42522 31.08 30.859 31.284 0 -0.0012043 -0.00012624 NaN 1.7423 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1287700 41225 6023 27402 27419 0.08113701023080466 SEVTLLVGPR 10 Unmodified _SEVTLLVGPR_ 0 0 0 FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant;FRMPD4|p.S1105Vfs*3|1|0.29|ENSG00000169933|chrX:12718134-12718134|A/-|frameshift_variant;FRMPD4|p.L1210Pfs*39|1|0.05|ENSG00000169933|chrX:12718454-12718455|-/CT|frameshift_variant;nc|ENSG00000169933|Q14CM0|FRMPD4;ENSG00000169933|ENST00000675598|FRMPD4;FRMPD4|p.C618Vfs*8|1|0.19|ENSG00000169933|chrX:12716306-12716306|C/-|frameshift_variant;FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.544996 1069.61316 -0.26917 -9.624E-05 1.5675 0.00056043 1.2983 0.0004642 357.5455350417806 33.244 0.58538 31.028 30.597 31.182 -2.2158 -0.052815 0.00014741 NaN 1.7423 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 536200 41226 6023 27402 27419 0.08113701023080466 SEVTSTVY 8 Unmodified _SEVTSTVY_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 885.4200439453125 1 885.420004 884.412728 0.68936 0.00061038 -0.3367 -0.00029812 0.35266 0.00031225 885.4195834792056 50.468 0.85445 50.468 50.095 50.95 0 71 24 4 0 0 0 0.036592 7 9551 9503;9531;9548;9551;9598;9599;9642 98.807 20.362 1 32300000 41227 4359 27403 27420 40656;40657;40658;40659;40660;40661;40662 40659 -0.03410193364368297 SEVTSTVY 8 Unmodified _SEVTSTVY_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 885.419677734375 1 885.420004 884.412728 0.048662 4.3086E-05 0.33015 0.00029232 0.37881 0.00033541 885.4201832889745 53.422 0.79933 50.538 50.178 50.977 -2.8837 67 22 4 0 0 0 0.036592 5 10125 10123;10125;10212;10214;10262 98.807 20.362 1 42535000 41228 4359 27403 27420 40663;40664;40665;40666;40667 40664 -0.03410193364368297 SEVTSTVY 8 Unmodified _SEVTSTVY_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 885.42041015625 1 885.420004 884.412728 0.28867 0.00025559 0.13538 0.00011987 0.42405 0.00037546 885.4200180583098 53.606 0.80999 50.518 50.178 50.988 -3.0876 65 22 4 0 0 0 0.036592 4 9866 9863;9866;9912;9915 98.807 20.362 1 40981000 41229 4359 27403 27420 40668;40669;40670;40671 40669 -0.03410193364368297 SEVTSTVY 8 Unmodified _SEVTSTVY_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 885.420654296875 1 885.420004 884.412728 0.10937 9.6835E-05 0.32471 0.0002875 0.43407 0.00038434 885.420183476482 53.592 0.78757 50.496 50.175 50.963 -3.0954 71 22 4 0 0 0 0.088049 7 9898 9861;9897;9898;9938;9942;9985;9988 78.445 11.409 1 40184000 41230 4359 27403 27420 40672;40673;40674;40675;40676;40677;40678 40674 -0.03410193364368297 SEVVEKLGPE 10 Unmodified _SEVVEKLGPE_ 0 0 0 REV__nc|ENSG00000109814|O60701-2|UGDH REV__nc|ENSG00000109814|O60701-2|UGDH MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78759765625 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 121.75 1 117.2 116.7 117.7 -4.5476 0 0 0 0.22559 1 23997 23997 17.113 0.1706 1 + 41231 15177 27404 27421 40679 40679 0.02109698169647345 SEWLFQSWRA 10 Unmodified _SEWLFQSWRA_ 0 0 0 REV__ENST00000557863.5_1_15:96833885-96870306:-|nuORF REV__ENST00000557863.5_1_15:96833885-96870306:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21612548828125 3 437.21565 1308.62512 -0.71229 -0.00031142 0.17559 7.6772E-05 -0.5367 -0.00023465 437.2157402902028 13.546 0.51025 12.373 12.212 12.722 -1.173 29 14 3 0 0 0 0.75587 1 1750 1750 3.8763 0 1 2230000 + 41232 23017 27405 27422 40680 40680 -0.01684682233735657 SEWQLLRL 8 Unmodified _SEWQLLRL_ 0 0 0 HVCN1|p.R226W|1|0.36|ENSG00000122986|chr12:110650248-110650248|G/A|missense_variant HVCN1|p.R226W|1|0.36|ENSG00000122986|chr12:110650248-110650248|G/A|missense_variant HVCN1|p.R226W|1|0.36|ENSG00000122986|chr12:110650248-110650248|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2692260742188 2 522.795466 1043.57638 -0.012154 -6.3539E-06 0.19465 0.00010176 0.18249 9.5406E-05 522.7955410769506 120.78 0.73618 116.14 115.69 116.43 -4.645 51 20 3 0 0 0 0.96386 1 23100 23100 14.838 14.838 1 5173000 41233 11928 27406 27423 40681 40681 0.056334491971938405 SEWTLYNPG 9 Unmodified _SEWTLYNPG_ 0 0 0 ENST00000525815.5_2_11:107663208-107663331:-|nuORF ENST00000525815.5_2_11:107663208-107663331:-|nuORF ENST00000525815.5_2_11:107663208-107663331:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 356.07501220703125 3 356.166185 1065.47673 -0.37836 -0.00013476 -1.1729 -0.00041774 -1.5512 -0.0005525 356.50018332772055 14.474 0.52841 14.474 14.279 14.807 0 23 14 2 0 0 0 0.86532 1 2127 2127 1.0715 0.3738 1 851360 41234 10904 27407 27424 40682 40682 -0.05339413207434518 SEYAQRQSL 9 Unmodified _SEYAQRQSL_ 0 0 0 ENSG00000143061|ENST00000369486|IGSF3;nc|ENSG00000143061|O75054-2|IGSF3;IGSF3|p.R1001Gfs*34|1|0.12|ENSG00000143061|chr1:116579725-116579725|T/-|frameshift_variant;IGSF3|p.G763Afs*27|2|0.32|ENSG00000143061|chr1:116588846-116588846|C/-|frameshift_variant ENSG00000143061|ENST00000369486|IGSF3 ENSG00000143061|ENST00000369486|IGSF3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26708984375 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 32.786 1 30.555 30.055 31.055 -2.2305 0 0 0 0.22823 1 5983 5983 15.248 0.41021 1 41235 4451 27408 27425 40683 40683 -0.017052234301445424 SEYCTLLK 8 Unmodified _SEYCTLLK_ 0 0 0 P2RX3|p.R295C|1|0.22|ENSG00000109991|chr11:57368049-57368049|C/T|missense_variant P2RX3|p.R295C|1|0.22|ENSG00000109991|chr11:57368049-57368049|C/T|missense_variant P2RX3|p.R295C|1|0.22|ENSG00000109991|chr11:57368049-57368049|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74041748046875 2 478.741511 955.468469 NaN NaN NaN NaN NaN NaN NaN 109.83 1 109.83 109.33 110.33 0 0 0 0 0.21486 1 21596 21596 12.532 2.3482 1 41236 12744 27409 27426 40684 40684 -0.01104683448409105 SEYDKLRKL 9 Unmodified _SEYDKLRKL_ 0 0 0 REV__CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant REV__CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3280639648438 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 57.48 1 54.585 54.085 55.085 -2.8944 0 0 0 0.20155 1 11031 11031 23.148 10.106 1 + 41237 13380 27410 27427 40685 40685 0.06533086051808823 SEYDQQVGLL 10 Unmodified _SEYDQQVGLL_ 0 0 0 REV__ENST00000287218.8_1_6:37787351-37897773:+|nuORF REV__ENST00000287218.8_1_6:37787351-37897773:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.338134765625 2 576.282586 1150.55062 -0.10928 -6.2975E-05 0.94103 0.0005423 0.83176 0.00047933 576.2828135533385 57.294 0.52417 54.399 54.166 54.69 -2.8944 18 14 2 0 0 0 0.57735 1 11011 11011 20.454 0 1 1803700 + 41238 20336 27411 27428 40686 40686 -0.018634898357504426 SEYEIWVSA 9 Unmodified _SEYEIWVSA_ 0 0 0 PTPRS|p.S414Afs*30|3|0.23|ENSG00000105426|chr19:5244238-5244238|C/-|frameshift_variant;PTPRS|p.P676Rfs*134|2|0.2|ENSG00000105426|chr19:5231438-5231438|G/-|frameshift_variant;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS PTPRS|p.S414Afs*30|3|0.23|ENSG00000105426|chr19:5244238-5244238|C/-|frameshift_variant PTPRS|p.S414Afs*30|3|0.23|ENSG00000105426|chr19:5244238-5244238|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7943115234375 2 542.253297 1082.49204 0.66887 0.0003627 -0.48944 -0.0002654 0.17943 9.7296E-05 542.2529317349582 112.58 0.90523 108.31 107.91 108.81 -4.2725 82 25 4 0 0 0 0.67531 1 21687 21687 7.9102 0 1 15057000 41239 2309 27412 27429 40687 40687 -0.04590546410236129 SEYEMSIA 8 Unmodified _SEYEMSIA_ 0 0 0 nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1 nc|ENSG00000138138|Q8NBU5-2|ATAD1 nc|ENSG00000138138|Q8NBU5-2|ATAD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2475280761719 2 465.199676 928.384799 0.32662 0.00015194 -0.17791 -8.2764E-05 0.14871 6.9179E-05 465.1997035437853 90.146 0.35336 86.102 85.918 86.271 -4.0443 11 9 2 0 0 0 0.88085 1 17155 17155 2.643 2.0162 1 574700 41240 4156 27413 27430 40688 40688 -0.08225839616125086 SEYFYQEEF 9 Unmodified _SEYFYQEEF_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7564086914062 2 621.253494 1240.49243 0.34413 0.00021379 0.37399 0.00023234 0.71812 0.00044613 621.2535547816731 144.46 0.62088 139.39 139.08 139.7 -5.0671 41 17 4 0 0 0 0.54354 1 27852 27852 16.942 6.1428 1 8406300 41241 5050 27414 27431 40689 40689 -0.11819171481033663 SEYFYQEEF 9 Unmodified _SEYFYQEEF_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 621.253494 1240.49243 1.039 0.00064551 -0.72999 -0.00045351 0.30905 0.000192 621.2530460704639 144.24 0.72641 139.57 139.16 139.89 -4.6694 0.15625 -0.00079458 NaN 16.942 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 10661000 41242 5050 27414 27431 -0.11819171481033663 SEYFYQEEF 9 Unmodified _SEYFYQEEF_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 621.253494 1240.49243 0.4901 0.00030448 0.082444 5.1219E-05 0.57254 0.00035569 621.2534649137928 144.22 0.77113 139.28 138.85 139.62 -4.9445 -0.13745 0.00021488 NaN 16.942 52 21 3 NaN NaN NaN NaN 0 NaN NaN 0 9978300 41243 5050 27414 27431 -0.11819171481033663 SEYISNTF 8 Unmodified _SEYISNTF_ 0 0 0 PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000184588|Q07343-4|PDE4B PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2350158691406 2 480.71909 959.423627 -0.26536 -0.00012756 0.15062 7.2405E-05 -0.11474 -5.5159E-05 480.7192042507359 94.481 0.62162 94.481 94.14 94.762 0 31 17 2 0 0 0 0.27274 1 18496 18496 38.151 3.9638 1 3362300 41244 6923 27415 27432 40690 40690 -0.057707909900841514 SEYISNTF 8 Unmodified _SEYISNTF_ 0 0 0 PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000184588|Q07343-4|PDE4B PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23516845703125 2 480.71909 959.423627 0.064849 3.1174E-05 0.088749 4.2663E-05 0.1536 7.3837E-05 480.7190830710151 98.812 0.83465 94.679 94.157 94.992 -4.1326 51 23 3 0 0 0 0.2118 1 19440 19440 44.407 10.305 1 6006500 41245 6923 27415 27432 40691 40691 -0.057707909900841514 SEYKSVIYY 9 Unmodified _SEYKSVIYY_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3130493164062 2 576.284597 1150.55464 NaN NaN NaN NaN NaN NaN NaN 91.489 1 91.489 90.989 91.989 0 0 0 0 0.19891 1 17879 17879 23.79 8.9515 1 41246 4836 27416 27433 40692 40692 -0.014614003420547306 SEYKSVIYY 9 Unmodified _SEYKSVIYY_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3179321289062 2 576.284597 1150.55464 -0.10928 -6.2975E-05 -2.5492 -0.0014691 -2.6585 -0.001532 576.2828135533385 57.294 0.52417 54.399 54.166 54.69 -2.8944 18 14 2 0 0 0 0.24143 1 11021 11021 1.2148 0.36989 1 1803700 41247 4836 27416 27433 40693 40693 -0.014614003420547306 SEYLGVTSF 9 Unmodified _SEYLGVTSF_ 0 0 0 ENST00000464779.1_1_6:170117898-170118989:-|nuORF;PHF10|p.A207Qfs*8|1|0.18|ENSG00000130024|chr6:169715783-169715783|T/-|frameshift_variant;nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10 ENST00000464779.1_1_6:170117898-170118989:-|nuORF ENST00000464779.1_1_6:170117898-170118989:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 501.2132263183594 2 501.742565 1001.47058 -0.11759 -5.8998E-05 0.2661 0.00013351 0.14851 7.4514E-05 501.74270063640364 142.12 0.67923 137.1 136.8 137.48 -5.0261 44 19 3 0 0 0 0.024029 1 27389 27389 60.47 44.992 1 5090300 41248 3578 27417 27434 40694 40694 -0.030099314389531173 SEYLGVTSF 9 Unmodified _SEYLGVTSF_ 0 0 0 ENST00000464779.1_1_6:170117898-170118989:-|nuORF;PHF10|p.A207Qfs*8|1|0.18|ENSG00000130024|chr6:169715783-169715783|T/-|frameshift_variant;nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10 ENST00000464779.1_1_6:170117898-170118989:-|nuORF ENST00000464779.1_1_6:170117898-170118989:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 501.742565 1001.47058 0.035452 1.7788E-05 0.44758 0.00022457 0.48304 0.00024236 501.7426624295318 141.85 0.77084 137.2 136.81 137.58 -4.6493 0.078581 0.00013655 NaN 60.47 45 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6780000 41249 3578 27417 27434 -0.030099314389531173 SEYLGVTSF 9 Unmodified _SEYLGVTSF_ 0 0 0 ENST00000464779.1_1_6:170117898-170118989:-|nuORF;PHF10|p.A207Qfs*8|1|0.18|ENSG00000130024|chr6:169715783-169715783|T/-|frameshift_variant;nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10 ENST00000464779.1_1_6:170117898-170118989:-|nuORF ENST00000464779.1_1_6:170117898-170118989:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 501.742565 1001.47058 0.14443 7.2467E-05 0.21347 0.00010711 0.3579 0.00017957 501.74263035386264 141.93 0.70027 137.06 136.71 137.41 -4.8678 -0.05755 -9.8384E-05 NaN 60.47 47 19 3 NaN NaN NaN NaN 0 NaN NaN 0 5062000 41250 3578 27417 27434 -0.030099314389531173 SEYMNNKEA 9 Unmodified _SEYMNNKEA_ 0 0 0 ENST00000515592.1_1_5:140041093-140041799:+|nuORF;ENSG00000113141|ENST00000417647|IK ENST00000515592.1_1_5:140041093-140041799:+|nuORF ENST00000515592.1_1_5:140041093-140041799:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.785400390625 2 543.232039 1084.44952 -0.6947 -0.00037739 0.42382 0.00023023 -0.27089 -0.00014716 543.2322592761453 21.001 0.31197 19.28 19.115 19.427 -1.7211 21 8 3 0 0 0 0.010502 1 3270 3270 103.42 55.671 1 3448000 41251 2725 27418 27435 40695 40695 -0.08932264810118795 SEYMNNKEA 9 Unmodified _SEYMNNKEA_ 0 0 0 ENST00000515592.1_1_5:140041093-140041799:+|nuORF;ENSG00000113141|ENST00000417647|IK ENST00000515592.1_1_5:140041093-140041799:+|nuORF ENST00000515592.1_1_5:140041093-140041799:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.232039 1084.44952 -0.21047 -0.00011433 0.21871 0.00011881 0.0082403 4.4764E-06 543.2321584323615 20.733 0.37468 19.349 19.168 19.542 -1.3847 0.034579 -9.8833E-05 NaN 103.42 30 10 4 NaN NaN NaN NaN 0 NaN NaN 0 4840700 41252 2725 27418 27435 -0.08932264810118795 SEYNFWNT 8 Unmodified _SEYNFWNT_ 0 0 0 REV__ENSG00000164300|ENST00000507668|SERINC5 REV__ENSG00000164300|ENST00000507668|SERINC5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 354.4412536621094 3 354.150535 1059.42977 -0.23302 -8.2523E-05 1.009 0.00035733 0.77597 0.00027481 354.1508922857854 20.626 0.24504 19.241 19.096 19.341 -1.3847 9 6 2 0 0 0 0.89687 1 3187 3187 0.0082765 0 1 408450 + 41253 17670 27419 27436 40696 40696 -0.0975627275856823 SEYPGVKTV 9 Unmodified _SEYPGVKTV_ 0 0 0 ENSG00000175344|ENST00000306901|CHRNA7;nc|ENSG00000175344|P36544-2|CHRNA7 ENSG00000175344|ENST00000306901|CHRNA7 ENSG00000175344|ENST00000306901|CHRNA7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2572021484375 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 51.954 1 51.954 51.454 52.454 0 0 0 0 0.18489 1 9871 9871 19.626 9.552 1 41254 6402 27420 27437 40697 40697 0.012100613149982564 SEYPGVKTV 9 Unmodified _SEYPGVKTV_ 0 0 0 ENSG00000175344|ENST00000306901|CHRNA7;nc|ENSG00000175344|P36544-2|CHRNA7 ENSG00000175344|ENST00000306901|CHRNA7 ENSG00000175344|ENST00000306901|CHRNA7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2559509277344 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 54.946 1 52.063 51.563 52.563 -2.8837 0 0 0 0.21434 1 10500 10500 19.362 3.5148 1 41255 6402 27420 27437 40698 40698 0.012100613149982564 SEYPGVKTV 9 Unmodified _SEYPGVKTV_ 0 0 0 ENSG00000175344|ENST00000306901|CHRNA7;nc|ENSG00000175344|P36544-2|CHRNA7 ENSG00000175344|ENST00000306901|CHRNA7 ENSG00000175344|ENST00000306901|CHRNA7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2567443847656 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 55.144 1 52.009 51.509 52.509 -3.1352 0 0 0 0.21434 1 10186 10186 19.362 3.5148 1 41256 6402 27420 27437 40699 40699 0.012100613149982564 SEYPGVKTV 9 Unmodified _SEYPGVKTV_ 0 0 0 ENSG00000175344|ENST00000306901|CHRNA7;nc|ENSG00000175344|P36544-2|CHRNA7 ENSG00000175344|ENST00000306901|CHRNA7 ENSG00000175344|ENST00000306901|CHRNA7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2566223144531 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 55.376 1 52.241 51.741 52.741 -3.1352 0 0 0 0.22823 1 10232 10232 15.248 3.6082 1 41257 6402 27420 27437 40700 40700 0.012100613149982564 SEYPPPHE 8 Unmodified _SEYPPPHE_ 0 0 0 nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3 nc|ENSG00000165323|Q8TDW7|FAT3 nc|ENSG00000165323|Q8TDW7|FAT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74072265625 2 478.211432 954.408311 -0.021988 -1.0515E-05 0.25783 0.0001233 0.23584 0.00011278 478.21147064950844 36.87 0.32303 36.87 36.704 37.027 0 14 8 2 0 0 0 0.69713 1 6792 6792 19.439 4.8573 1 898050 41258 5619 27421 27438 40701 40701 -0.07071657787287222 SEYQQYQDATA 11 Unmodified _SEYQQYQDATA_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF ENSG00000196230|ENST00000327892|TUBB;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1305.55078125 1 1303.5437 1302.53642 -0.20253 -0.00026401 -0.80761 -0.0010528 -1.0101 -0.0013168 1303.543120612086 45.722 0.58755 42.881 42.619 43.206 -2.8409 33 16 3 0 0 0 0.71397 1 8630 8630 10.8 3.5103 1 2166500 41259 2259;6276;8472 27422 27439 40702 40702 -0.10274187054710637 SEYQQYQDATA 11 Unmodified _SEYQQYQDATA_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF ENSG00000196230|ENST00000327892|TUBB;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 1303.5437 1302.53642 -0.20253 -0.00026401 -0.80761 -0.0010528 -1.0101 -0.0013168 1303.543120612086 45.722 0.58755 42.881 42.619 43.206 -2.8409 -0.035309 0.0002412 NaN 10.8 33 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2166500 41260 2259;6276;8472 27422 27439 -0.10274187054710637 SEYQQYQDATA 11 Unmodified _SEYQQYQDATA_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF ENSG00000196230|ENST00000327892|TUBB;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 1303.5437 1302.53642 0.2165 0.00028221 -1.0677 -0.0013918 -0.85121 -0.0011096 1303.5421822414376 45.827 0.44504 42.962 42.693 43.138 -2.8653 0.045359 -9.7846E-05 NaN 10.8 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1998400 41261 2259;6276;8472 27422 27439 -0.10274187054710637 SEYQQYQDATA 11 Unmodified _SEYQQYQDATA_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF ENSG00000196230|ENST00000327892|TUBB;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 1303.5437 1302.53642 -0.0077713 -1.013E-05 -1.0557 -0.0013761 -1.0634 -0.0013862 1303.542496519792 45.773 0.55525 42.906 42.643 43.198 -2.8665 -0.01005 -8.2155E-05 NaN 10.8 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2937800 41262 2259;6276;8472 27422 27439 -0.10274187054710637 SEYRQILS 8 Unmodified _SEYRQILS_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.0057678222656 3 332.510063 994.50836 -0.46634 -0.00015506 0.54526 0.0001813 0.078922 2.6242E-05 332.51020710327276 19.052 0.38409 19.052 18.892 19.276 0 26 10 3 0 0 0 1.0278 1 3139 3139 1.4819 0.41044 1 15294000 41263 3544 27423 27440 40703 40703 0.01088579546535584 SEYSCQTNN 9 Unmodified _SEYSCQTNN_ 0 0 0 nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;PCDH7|p.H835Tfs*53|1|0.16|ENSG00000169851|chr4:31142537-31142537|C/-|frameshift_variant;ENSG00000169851|ENST00000695919|PCDH7 nc|ENSG00000169851|O60245|PCDH7 nc|ENSG00000169851|O60245|PCDH7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.67724609375 2 523.198196 1044.38184 -0.051504 -2.6947E-05 -0.52086 -0.00027251 -0.57236 -0.00029946 523.200588672442 45.866 0.55356 43 42.747 43.3 -2.8665 54 15 6 0 0 0 0.58804 1 8325 8325 13.906 2.2658 1 5120900 41264 6010 27424 27441 40704 40704 -0.13857714740925076 SEYSRKKY 8 Unmodified _SEYSRKKY_ 0 0 0 ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant;nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2 ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 354.20904541015625 3 354.185579 1059.53491 NaN NaN NaN NaN NaN NaN NaN 17.137 1 15.865 15.365 16.365 -1.2722 0 0 0 0.21486 1 2506 2506 1.8442 0.19162 1 41265 81 27425 27442 40705 40705 0.0075226843787277176 SEYSSPGRP 9 Unmodified _SEYSSPGRP_ 0 0 0 ENSG00000108854|ENST00000262435|SMURF2;ENST00000582081.5_1_17:62541968-62590137:-|nuORF ENSG00000108854|ENST00000262435|SMURF2 ENSG00000108854|ENST00000262435|SMURF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2553405761719 2 490.227613 978.440674 0.99082 0.00048573 -1.55 -0.00075985 -0.55917 -0.00027412 490.2272001109189 23.812 0.73467 22.259 21.94 22.675 -1.5532 38 20 2 0 0 0 0.21532 1 4122 4122 36.506 8.0194 1 1882500 41266 2500 27426 27443 40706 40706 -0.049408703842800605 SEYSSPGRP 9 Unmodified _SEYSSPGRP_ 0 0 0 ENSG00000108854|ENST00000262435|SMURF2;ENST00000582081.5_1_17:62541968-62590137:-|nuORF ENSG00000108854|ENST00000262435|SMURF2 ENSG00000108854|ENST00000262435|SMURF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2642517089844 2 490.227613 978.440674 0.061784 3.0288E-05 -0.18499 -9.0688E-05 -0.12321 -6.04E-05 490.2276679648055 23.655 0.94188 22.201 21.818 22.76 -1.4535 41 26 2 0 0 0 0.15889 2 3811 3811;3814 34.402 22.25 1 2146500 41267 2500 27426 27443 40707;40708 40707 -0.049408703842800605 SEYSSPGRP 9 Unmodified _SEYSSPGRP_ 0 0 0 ENSG00000108854|ENST00000262435|SMURF2;ENST00000582081.5_1_17:62541968-62590137:-|nuORF ENSG00000108854|ENST00000262435|SMURF2 ENSG00000108854|ENST00000262435|SMURF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2673645019531 2 490.227613 978.440674 -0.585 -0.00028678 0.080872 3.9646E-05 -0.50412 -0.00024714 490.2279993819105 23.902 0.83099 22.114 21.773 22.604 -1.7886 43 23 2 0 0 0 0.39189 1 3890 3890 26.268 4.5215 1 1315500 41268 2500 27426 27443 40709 40709 -0.049408703842800605 SEYTRNYT 8 Unmodified _SEYTRNYT_ 0 0 0 REV__ENST00000527141.5_1_11:66331945-66334941:-|nuORF REV__ENST00000527141.5_1_11:66331945-66334941:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 516.7922973632812 2 517.232896 1032.45124 -0.23163 -0.00011981 2.2539 0.0011658 2.0222 0.001046 517.2340130235427 44.314 0.69828 41.524 41.186 41.884 -2.79 32 19 2 0 0 0 0.96284 1 8292 8292 8.5933 3.8373 1 1854600 + 41269 18391 27427 27444 40710 40710 -0.06368887729877315 SEYTRNYT 8 Unmodified _SEYTRNYT_ 0 0 0 REV__ENST00000527141.5_1_11:66331945-66334941:-|nuORF REV__ENST00000527141.5_1_11:66331945-66334941:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 517.232896 1032.45124 0.40128 0.00020756 1.4648 0.00075762 1.866 0.00096518 517.2336435698431 41.565 0.69845 41.565 41.129 41.828 0 -0.014951 -0.0002332 NaN 8.5933 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2139600 + 41270 18391 27427 27444 -0.06368887729877315 SEYTRNYT 8 Unmodified _SEYTRNYT_ 0 0 0 REV__ENST00000527141.5_1_11:66331945-66334941:-|nuORF REV__ENST00000527141.5_1_11:66331945-66334941:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 517.232896 1032.45124 -0.6456 -0.00033393 1.5186 0.00078546 0.87298 0.00045154 517.2340356064817 44.367 0.90181 41.601 41.219 42.121 -2.7661 0.02081 -0.00017753 NaN 8.5933 39 25 3 NaN NaN NaN NaN 0 NaN NaN 0 1841500 + 41271 18391 27427 27444 -0.06368887729877315 SEYTRNYT 8 Unmodified _SEYTRNYT_ 0 0 0 REV__ENST00000527141.5_1_11:66331945-66334941:-|nuORF REV__ENST00000527141.5_1_11:66331945-66334941:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 517.232896 1032.45124 -0.072632 -3.7568E-05 1.726 0.00089276 1.6534 0.0008552 517.2336682264603 44.379 0.91727 41.631 41.147 42.064 -2.7475 0.050826 3.7075E-05 NaN 8.5933 34 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1054300 + 41272 18391 27427 27444 -0.06368887729877315 SEYVPSLSY 9 Unmodified _SEYVPSLSY_ 0 0 0 REV__ENST00000595585.1_1_19:51452094-51455913:-|nuORF REV__ENST00000595585.1_1_19:51452094-51455913:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2705688476562 2 522.747847 1043.48114 -0.23924 -0.00012506 0.041201 2.1538E-05 -0.19804 -0.00010352 522.7477973308979 84.874 1.2559 81.21 80.779 82.035 -3.6641 132 35 5 0 0 0 0.10777 1 16671 16671 57.471 0 1 119130000 + 41273 17966 27428 27445 40711 40711 -0.03885948784500215 SEYYFFIL 8 Unmodified _SEYYFFIL_ 0 0 0 REV__ENST00000302424.11_1_10:104417132-104417561:+|nuORF REV__ENST00000302424.11_1_10:104417132-104417561:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2642822265625 2 541.265676 1080.5168 0.41386 0.00022401 -0.61939 -0.00033526 -0.20554 -0.00011125 541.7670544334362 100.53 0.30453 96.542 96.381 96.686 -3.9895 17 8 3 0 0 0 0.72861 1 19290 19290 10.183 0 1 882940 + 41274 20413 27429 27446 40712 40712 -0.020238665368424336 SEYYMKEP 8 Unmodified _SEYYMKEP_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;ENST00000571796.5_1_17:80869637-80887508:+|nuORF;DNAJC7-TBCD|1|fusion ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6829833984375 2 523.7286 1045.44265 NaN NaN NaN NaN NaN NaN NaN 115.77 1 111.18 110.68 111.68 -4.5815 0 0 0 0.22847 1 22225 22225 10.074 5.358 1 41275 4383 27430 27447 40713 40713 -0.07825577690687169 SFAIGLSSF 9 Unmodified _SFAIGLSSF_ 0 0 0 REV__ENSG00000163762|ENST00000296059|TM4SF18 REV__ENSG00000163762|ENST00000296059|TM4SF18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 102.97 1 98.653 98.153 99.153 -4.3208 0 0 0 0.1964 1 19719 19719 0.073264 0 1 + 41276 17611 27431 27448 40714 40714 0.00354693631857117 SFALTINY 8 Unmodified _SFALTINY_ 0 0 0 REV__nc|ENSG00000123607|Q7Z4L5-2|TTC21B REV__nc|ENSG00000123607|Q7Z4L5-2|TTC21B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.555 1 66.165 65.665 66.665 -3.3903 0 0 0 0.2386 1 13157 13157 0.0082765 0.004896 1 + 41277 15738 27432 27449 40715 40715 0.003546936318457483 SFAPPPPPP 9 Unmodified _SFAPPPPPP_ 0 0 0 REV__nc|ENSG00000089639|Q9P107-2|GMIP REV__nc|ENSG00000089639|Q9P107-2|GMIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75018310546875 2 453.739628 905.464704 -0.077828 -3.5314E-05 1.2143 0.00055097 1.1365 0.00051565 453.7398741940927 66.967 1.2404 66.967 66.413 67.653 0 52 34 2 0 0 0 0.52414 1 13047 13047 18.135 3.5533 1 1376900 + 41278 14532 27433 27450 40716 40716 0.008190148400444741 SFAPPPPPP 9 Unmodified _SFAPPPPPP_ 0 0 0 REV__nc|ENSG00000089639|Q9P107-2|GMIP REV__nc|ENSG00000089639|Q9P107-2|GMIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75048828125 2 453.739628 905.464704 -0.22528 -0.00010222 1.1601 0.00052638 0.93481 0.00042416 453.7397618977598 70.867 1.3056 67.618 66.86 68.166 -3.2492 55 36 2 0 0 0 0.22334 2 13759 13759;13799 36.044 7.871 1 1723200 + 41279 14532 27433 27450 40717;40718 40717 0.008190148400444741 SFAPPPPPP 9 Unmodified _SFAPPPPPP_ 0 0 0 REV__nc|ENSG00000089639|Q9P107-2|GMIP REV__nc|ENSG00000089639|Q9P107-2|GMIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7578430175781 2 453.739628 905.464704 0.31023 0.00014077 0.60182 0.00027307 0.91206 0.00041384 453.7395365855503 70.804 1.6562 67.337 66.43 68.086 -3.467 76 46 2 0 0 0 0.32428 2 13543 13374;13543 30.225 6.5389 1 1188000 + 41280 14532 27433 27450 40719;40720 40720 0.008190148400444741 SFAPPPPPP 9 Unmodified _SFAPPPPPP_ 0 0 0 REV__nc|ENSG00000089639|Q9P107-2|GMIP REV__nc|ENSG00000089639|Q9P107-2|GMIP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 453.739628 905.464704 -0.077828 -3.5314E-05 1.2143 0.00055097 1.1365 0.00051565 453.7398741940927 66.967 1.2404 66.967 66.413 67.653 0 0 0 NaN 18.135 52 34 2 NaN NaN NaN NaN 0 NaN NaN 0 1376900 + 41281 14532 27433 27450 0.008190148400444741 SFAPPPPPP 9 Unmodified _SFAPPPPPP_ 0 0 0 REV__nc|ENSG00000089639|Q9P107-2|GMIP REV__nc|ENSG00000089639|Q9P107-2|GMIP MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.739628 905.464704 0.31023 0.00014077 0.60182 0.00027307 0.91206 0.00041384 453.7395365855503 70.804 1.6562 67.337 66.43 68.086 -3.467 -0.14035 -0.00025334 NaN 36.044 76 46 2 NaN NaN NaN NaN 0 NaN NaN 0 1188000 + 41282 14532 27433 27450 0.008190148400444741 SFCAHQRI 8 Unmodified _SFCAHQRI_ 0 0 0 ENSG00000166716|ENST00000560079|ZNF592 ENSG00000166716|ENST00000560079|ZNF592 ENSG00000166716|ENST00000560079|ZNF592 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2369079589844 2 481.237261 960.45997 NaN NaN NaN NaN NaN NaN NaN 22.857 1 21.404 20.904 21.904 -1.4535 0 0 0 0.23487 1 3662 3662 1.7423 1.1154 1 41283 5742 27434 27451 40721 40721 -0.021841925743729007 SFCCCISILY 10 Unmodified _SFCCCISILY_ 0 0 0 REV__ENST00000311417.6_1_3:178736696-178736894:-|nuORF REV__ENST00000311417.6_1_3:178736696-178736894:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.327392578125 2 576.250331 1150.48611 NaN NaN NaN NaN NaN NaN NaN 105.43 1 105.43 104.93 105.93 0 0 0 0 0.22588 1 20723 20723 6.7232 0.99131 1 + 41284 20491 27435 27452 40722 40722 -0.08311427509397618 SFDCDCNMCM 10 Unmodified _SFDCDCNMCM_ 0 0 0 REV__FGD5|p.G1252D|1|0.31|ENSG00000154783|chr3:14922496-14922496|G/A|missense_variant REV__FGD5|p.G1252D|1|0.31|ENSG00000154783|chr3:14922496-14922496|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.3484802246094 3 390.112724 1167.31634 NaN NaN NaN NaN NaN NaN NaN 8.6295 1 7.5949 7.0949 8.0949 -1.0347 0 0 0 0.22588 1 822 822 0 0 1 + 41285 23536 27436 27453 40723 40723 -0.26062234845790044 SFDCDCNMCM 10 Unmodified _SFDCDCNMCM_ 0 0 0 REV__FGD5|p.G1252D|1|0.31|ENSG00000154783|chr3:14922496-14922496|G/A|missense_variant REV__FGD5|p.G1252D|1|0.31|ENSG00000154783|chr3:14922496-14922496|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.11199951171875 3 390.112724 1167.31634 NaN NaN NaN NaN NaN NaN NaN 171.26 1 166.39 165.89 166.89 -4.873 0 0 0 0.22588 1 33934 33934 0 0 1 + 41286 23536 27436 27453 40724 40724 -0.26062234845790044 SFDCDCNMCM 10 Unmodified _SFDCDCNMCM_ 0 0 0 REV__FGD5|p.G1252D|1|0.31|ENSG00000154783|chr3:14922496-14922496|G/A|missense_variant REV__FGD5|p.G1252D|1|0.31|ENSG00000154783|chr3:14922496-14922496|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.1120300292969 3 390.112724 1167.31634 NaN NaN NaN NaN NaN NaN NaN 172.21 1 167.33 166.83 167.83 -4.881 0 0 0 0.22588 1 34168 34168 0 0 1 + 41287 23536 27436 27453 40725 40725 -0.26062234845790044 SFDEDDRY 8 Unmodified _SFDEDDRY_ 0 0 0 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.695556640625 2 523.706711 1045.39887 NaN NaN NaN NaN NaN NaN NaN 117.79 1 113.18 112.68 113.68 -4.6106 0 0 0 0.21486 1 22605 22605 4.756 0.42677 1 41288 6147 27437 27454 40726 40726 -0.12201470863465147 SFDGVFVKGPV 11 Unmodified _SFDGVFVKGPV_ 0 0 0 REV__STYXL1|p.N172D|1|0.62|ENSG00000127952|chr7:76005344-76005344|T/C|missense_variant REV__STYXL1|p.N172D|1|0.62|ENSG00000127952|chr7:76005344-76005344|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3111572265625 2 576.308406 1150.60226 NaN NaN NaN NaN NaN NaN NaN 127.05 1 127.05 126.55 127.55 0 0 0 0 0.22501 1 25077 25077 12.241 0.60036 1 + 41289 24751 27438 27455 40727 40727 0.03298298648792297 SFDHRTRER 9 Unmodified _SFDHRTRER_ 0 0 0 REV__CNNM1|p.K587T|1|0.21|ENSG00000119946|chr10:99360877-99360877|A/C|missense_variant REV__CNNM1|p.K587T|1|0.21|ENSG00000119946|chr10:99360877-99360877|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.29736328125 2 602.30251 1202.59047 NaN NaN NaN NaN NaN NaN NaN 126.95 1 126.95 126.45 127.45 0 0 0 0 0.23508 1 25057 25057 10.824 2.6684 1 + 41290 13461 27439 27456 40728 40728 -0.002725053218227913 SFDLLLLIAF 10 Unmodified _SFDLLLLIAF_ 0 0 0 ENST00000265198.8_1_6:154476969-154477143:-|nuORF ENST00000265198.8_1_6:154476969-154477143:-|nuORF ENST00000265198.8_1_6:154476969-154477143:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3355102539062 2 576.339175 1150.6638 NaN NaN NaN NaN NaN NaN NaN 132.7 1 127.84 127.34 128.34 -4.8527 0 0 0 0.22583 1 25491 25491 13.906 4.5229 1 41291 8353 27440 27457 40729 40729 0.09449230348081983 SFDQHPSLR 9 Unmodified _SFDQHPSLR_ 0 0 0 REV__ENST00000317114.1_1_18:3597396-3597651:+|nuORF REV__ENST00000317114.1_1_18:3597396-3597651:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7721557617188 2 543.76998 1085.52541 NaN NaN NaN NaN NaN NaN NaN 142.27 1 142.27 141.77 142.77 0 0 0 0 0.23508 1 28366 28366 11.495 2.1116 1 + 41292 20528 27441 27458 40730 40730 -0.013934998476770488 SFDSSNPEY 9 Unmodified _SFDSSNPEY_ 0 0 0 nc|ENSG00000005961|P08514-3|ITGA2B;nc|ENSG00000005961|P08514-2|ITGA2B;ENSG00000005961|ENST00000262407|ITGA2B;ENST00000591990.5_1_17:42461891-42462439:-|nuORF;ENST00000592075.5_1_17:42461341-42462568:-|nuORF;ENST00000589645.5_1_17:42461260-42462716:-|nuORF nc|ENSG00000005961|P08514-3|ITGA2B nc|ENSG00000005961|P08514-3|ITGA2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.69189453125 2 523.209086 1044.40362 -0.16349 -8.5538E-05 -1.3961 -0.00073045 -1.5596 -0.00081599 523.7088245367355 138.43 0.17169 133.79 133.67 133.84 -4.6413 6 4 2 0 0 0 0.54354 1 27330 27330 16.942 4.4107 1 1159300 41293 1001 27442 27459 40731 40731 -0.11680586720694919 SFDSVFGN 8 Unmodified _SFDSVFGN_ 0 0 0 REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 438.6695861816406 2 436.692875 871.371197 -0.074451 -3.2512E-05 0.49301 0.00021529 0.41856 0.00018278 436.6941030243072 107.33 0.96598 102.92 102.44 103.4 -4.4121 119 27 6 0 0 0 8448 1 20547 20547 3.2813 3.1584 1 10318000 + 41294 15201 27443 27460 40732 40732 -0.06963329333029833 SFDYKAVV 8 Unmodified _SFDYKAVV_ 0 0 0 REV__tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1 REV__tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 128.26 1 123.52 123.02 124.02 -4.7408 0 0 0 0.2386 1 24678 24678 0.12286 0.12286 1 + 41295 24899 27444 27461 40733 40733 0.00354693631857117 SFEPLAPAE 9 Unmodified _SFEPLAPAE_ 0 0 0 REV__ENST00000592876.1_1_19:45573154-45573820:+|nuORF REV__ENST00000592876.1_1_19:45573154-45573820:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2377014160156 2 480.737283 959.460012 -0.051469 -2.4743E-05 -1.822 -0.00087591 -1.8735 -0.00090066 480.73638483703803 43.436 0.38755 40.717 40.595 40.982 -2.7191 11 10 2 0 0 0 0.54354 1 8168 8168 16.942 0 1 457820 + 41296 23284 27445 27462 40734 40734 -0.02133914093394651 SFESGQNGFI 10 Unmodified _SFESGQNGFI_ 0 0 0 ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7699584960938 2 543.248546 1084.48254 0.27908 0.00015161 -0.37613 -0.00020433 -0.097052 -5.2723E-05 543.2485960710284 86.527 0.559 86.527 86.178 86.737 0 24 15 2 0 0 0 0.82238 1 16878 16878 17.113 2.2746 1 1388400 41297 3294 27446 27463 40735 40735 -0.056323146957538484 SFESGQNGFI 10 Unmodified _SFESGQNGFI_ 0 0 0 ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7755737304688 2 543.248546 1084.48254 0.17418 9.4621E-05 -0.49646 -0.0002697 -0.32228 -0.00017508 543.2482771909084 90.923 0.64806 87.063 86.789 87.437 -3.8595 32 18 2 0 0 0 0.63858 1 17801 17801 17.113 0.1706 1 1357200 41298 3294 27446 27463 40736 40736 -0.056323146957538484 SFETTAERF 9 Unmodified _SFETTAERF_ 0 0 0 REV__FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant REV__FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7772827148438 2 544.256371 1086.49819 0.13523 7.36E-05 -2.6183 -0.001425 -2.4831 -0.0013514 544.2551931908876 147.34 0.20499 142.19 142.02 142.23 -5.1558 6 5 2 0 0 0 0.87258 1 28511 28511 0.45834 0 1 2754300 + 41299 23538 27447 27464 40737 40737 -0.04160028178716857 SFFAMKRSL 9 Unmodified _SFFAMKRSL_ 0 0 0 REV__nc|ENSG00000105855|P26012-2|ITGB8 REV__nc|ENSG00000105855|P26012-2|ITGB8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7907104492188 2 543.791869 1085.56919 NaN NaN NaN NaN NaN NaN NaN 139.36 1 139.36 138.86 139.86 0 0 0 0 0.23508 1 27696 27696 13.042 1.4022 1 + 41300 15019 27448 27465 40738 40738 0.029823933251009294 SFFGPVKF 8 Unmodified _SFFGPVKF_ 0 0 0 REV__RASAL2|p.E190Gfs*70|1|0.1|ENSG00000075391|chr1:178442759-178442760|-/GTCTTGCTGGTTGTACGAGCAAAGAGGGTATCATC|frameshift_variant REV__RASAL2|p.E190Gfs*70|1|0.1|ENSG00000075391|chr1:178442759-178442760|-/GTCTTGCTGGTTGTACGAGCAAAGAGGGTATCATC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16961669921875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 153.44 1 153.44 152.94 153.94 0 0 0 0 0.2396 1 30744 30744 0 0 1 + 41301 24549 27449 27466 40739 40739 0.018796052197103563 SFFPHYFKLKK 11 Unmodified _SFFPHYFKLKK_ 0 0 0 REV__ENST00000462445.1_1_10:70863984-70864131:+|nuORF REV__ENST00000462445.1_1_10:70863984-70864131:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2359924316406 3 481.271207 1440.79179 NaN NaN NaN NaN NaN NaN NaN 105.01 1 100.79 100.29 101.29 -4.2183 0 0 0 0.22632 1 20659 20659 0.026206 0 1 + 41302 21905 27450 27467 40740 40740 0.08902790661954896 SFGGWFMP 8 Unmodified _SFGGWFMP_ 0 0 0 REV__MGA|p.H151Pfs*66|1|0.03|ENSG00000174197|chr15:41669345-41669346|-/CA|frameshift_variant REV__MGA|p.H151Pfs*66|1|0.03|ENSG00000174197|chr15:41669345-41669346|-/CA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1392517089844 3 310.138913 927.39491 NaN NaN NaN NaN NaN NaN NaN 56.724 1 53.548 53.048 54.048 -3.1761 0 0 0 0.21486 1 10561 10561 1.6526 0 1 + 41303 23852 27451 27468 40741 40741 -0.07169187100214458 SFHNYFGG 8 Unmodified _SFHNYFGG_ 0 0 0 CON__Q9TRI1 CON__Q9TRI1 CON__Q9TRI1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16485595703125 3 310.136449 927.387516 NaN NaN NaN NaN NaN NaN NaN 152.01 1 146.83 146.33 147.33 -5.1759 0 0 0 0.2396 1 29458 29458 0 0 1 + 41304 707 27452 27469 40742 40742 -0.07908203376280198 SFHNYFGG 8 Unmodified _SFHNYFGG_ 0 0 0 CON__Q9TRI1 CON__Q9TRI1 CON__Q9TRI1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1646423339844 3 310.136449 927.387516 NaN NaN NaN NaN NaN NaN NaN 153.26 1 148.04 147.54 148.54 -5.2209 0 0 0 0.2396 1 29705 29705 0 0 1 + 41305 707 27452 27469 40743 40743 -0.07908203376280198 SFHSFQKFRPP 11 Unmodified _SFHSFQKFRPP_ 0 0 0 REV__ENST00000560119.5_1_15:49584731-49620353:+|nuORF REV__ENST00000560119.5_1_15:49584731-49620353:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2314453125 3 459.906928 1376.69895 NaN NaN NaN NaN NaN NaN NaN 15.441 1 15.441 14.941 15.941 0 0 0 0 0.23698 1 2350 2350 0.50596 0 1 + 41306 23038 27453 27470 40744 40744 0.02567285928603269 SFISSPKY 8 Unmodified _SFISSPKY_ 0 0 0 NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1645812988281 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 45.715 1 42.874 42.374 43.374 -2.8409 0 0 0 0.21486 1 8617 8617 3.9444 0 1 41307 12685 27454 27471 40745 40745 0.00354693631857117 SFISSPKY 8 Unmodified _SFISSPKY_ 0 0 0 NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 73.483 1 70.172 69.672 70.672 -3.3107 0 0 0 0.22757 1 14326 14326 0.62683 0 1 41308 12685 27454 27471 40746 40746 0.00354693631857117 SFISSPKY 8 Unmodified _SFISSPKY_ 0 0 0 NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.749 1 72.334 71.834 72.834 -3.4151 0 0 0 0.22699 1 14775 14775 0.62683 0 1 41309 12685 27454 27471 40747 40747 0.00354693631857117 SFISSPKY 8 Unmodified _SFISSPKY_ 0 0 0 NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16522216796875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 157.62 1 152.83 152.33 153.33 -4.7885 0 0 0 0.23837 1 31347 31347 0 0 1 41310 12685 27454 27471 40748 40748 0.00354693631857117 SFISSPKY 8 Unmodified _SFISSPKY_ 0 0 0 NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16326904296875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 150.55 1 145.35 144.85 145.85 -5.1994 0 0 0 0.23837 1 29175 29175 0 0 1 41311 12685 27454 27471 40749 40749 0.00354693631857117 SFISSPKY 8 Unmodified _SFISSPKY_ 0 0 0 NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 150.79 1 145.59 145.09 146.09 -5.1994 0 0 0 0.23837 1 29221 29221 0 0 1 41312 12685 27454 27471 40750 40750 0.00354693631857117 SFISSPKY 8 Unmodified _SFISSPKY_ 0 0 0 NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1643371582031 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 162.01 1 156.86 156.36 157.36 -5.1438 0 0 0 0.21486 1 31466 31466 1.6526 0.45928 1 41313 12685 27454 27471 40751 40751 0.00354693631857117 SFISSPKY 8 Unmodified _SFISSPKY_ 0 0 0 NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1646728515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 55.663 1 52.526 52.026 53.026 -3.1377 0 0 0 0.21486 1 10340 10340 3.9444 0 1 41314 12685 27454 27471 40752 40752 0.00354693631857117 SFISSPKY 8 Unmodified _SFISSPKY_ 0 0 0 NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1651611328125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 56.791 1 53.615 53.115 54.115 -3.1761 0 0 0 0.21486 1 10575 10575 3.9444 0 1 41315 12685 27454 27471 40753 40753 0.00354693631857117 SFISSPKY 8 Unmodified _SFISSPKY_ 0 0 0 NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 105.47 1 101.38 100.88 101.88 -4.0913 0 0 0 0.23182 1 20288 20288 0.62683 0 1 41316 12685 27454 27471 40754 40754 0.00354693631857117 SFISSPKY 8 Unmodified _SFISSPKY_ 0 0 0 NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant NEUROD4|p.L209Ffs*49|1|0.38|ENSG00000123307|chr12:55027060-55027060|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1634826660156 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 148.59 1 143.53 143.03 144.03 -5.0595 0 0 0 0.23837 1 28782 28782 0 0 1 41317 12685 27454 27471 40755 40755 0.00354693631857117 SFKDSPSKGL 10 Unmodified _SFKDSPSKGL_ 0 0 0 nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM nc|ENSG00000148175|P27105-2|STOM nc|ENSG00000148175|P27105-2|STOM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2830810546875 2 533.282389 1064.55022 0.10217 5.4485E-05 0.071192 3.7966E-05 0.17336 9.245E-05 533.2823877462582 94.623 1.1955 90.632 89.862 91.058 -3.9907 93 33 4 0 0 0 0.4144 1 18414 18414 29.841 5.82 1 36606000 41318 4731 27455 27472 40756 40756 0.020531352350417365 SFKDSPSKGL 10 Unmodified _SFKDSPSKGL_ 0 0 0 nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM nc|ENSG00000148175|P27105-2|STOM nc|ENSG00000148175|P27105-2|STOM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2833862304688 2 533.282389 1064.55022 0.54775 0.0002921 -0.43132 -0.00023001 0.11643 6.209E-05 533.2820457707753 94.681 1.0863 90.49 89.842 90.928 -4.1911 92 30 4 0 0 0 0.51622 1 17959 17959 23.79 4.5328 1 34282000 41319 4731 27455 27472 40757 40757 0.020531352350417365 SFKFLLLI 8 Unmodified _SFKFLLLI_ 0 0 0 L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|82|3|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|82|3|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|82|3|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27069091796875 2 490.812596 979.61064 -0.16772 -8.2317E-05 0.38548 0.0001892 0.21776 0.00010688 490.8127389450358 105.4 0.59735 101.13 100.81 101.41 -4.2638 41 16 3 0 0 0 1.0191 1 20757 20757 2.0598 0 1 5403600 41320 12039 27456 27473 40758 40758 0.12001897356083191 SFKGLEERL 9 Unmodified _SFKGLEERL_ 0 0 0 ENSG00000100104|ENST00000215917|SRRD ENSG00000100104|ENST00000215917|SRRD ENSG00000100104|ENST00000215917|SRRD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20184326171875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 71.823 1 71.823 71.323 72.323 0 0 0 0 0.23508 1 13918 13918 6.1918 0.46 1 41321 1929 27457 27474 40759 40759 0.046171279889904326 SFKGLEERL 9 Unmodified _SFKGLEERL_ 0 0 0 ENSG00000100104|ENST00000215917|SRRD ENSG00000100104|ENST00000215917|SRRD ENSG00000100104|ENST00000215917|SRRD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 75.102 1 71.738 71.238 72.238 -3.3643 0 0 0 0.23508 1 14653 14653 8.9762 3.1928 1 41322 1929 27457 27474 40760 40760 0.046171279889904326 SFKKNRFYMFT 11 Unmodified _SFKKNRFYMFT_ 0 0 0 ENST00000511334.1_1_5:64872783-64879053:+|nuORF;nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1 ENST00000511334.1_1_5:64872783-64879053:+|nuORF ENST00000511334.1_1_5:64872783-64879053:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2660827636719 3 490.251707 1467.73329 NaN NaN NaN NaN NaN NaN NaN 101.32 1 101.32 100.82 101.82 0 0 0 0 0.22632 1 19884 19884 5.4027 5.3079 1 41323 2751 27458 27475 40761 40761 0.01813366025180585 SFKQASKPS 9 Unmodified _SFKQASKPS_ 0 0 0 REV__SPO11|p.D340Efs*6|1|0.03|ENSG00000054796|chr20:57342788-57342789|-/ATGTC|frameshift_variant REV__SPO11|p.D340Efs*6|1|0.03|ENSG00000054796|chr20:57342788-57342789|-/ATGTC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2668151855469 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 52.111 1 49.024 48.524 49.524 -3.0876 0 0 0 0.18489 1 9580 9580 0.40827 0 1 + 41324 14109 27459 27476 40762 40762 0.023328834091330464 SFKQLDVND 9 Unmodified _SFKQLDVND_ 0 0 0 nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;EFCAB7|p.F431Lfs*3|2|0.41|ENSG00000203965|chr1:63557186-63557186|T/-|frameshift_variant nc|ENSG00000203965|A8K855-2|EFCAB7 nc|ENSG00000203965|A8K855-2|EFCAB7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2659912109375 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 71.398 1 67.798 67.298 68.298 -3.5999 0 0 0 0.11195 1 13463 13463 36.127 10.728 1 41325 7551 27460 27477 40763 40763 -0.015837416616705013 SFKVLQKLK 9 Unmodified _SFKVLQKLK_ 0 0 0 REV__nc|ENSG00000151422|P16591-3|FER REV__nc|ENSG00000151422|P16591-3|FER MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 364.5479431152344 3 364.237615 1089.69102 -0.35277 -0.00012849 -2.2527 -0.00082052 -2.6055 -0.00094901 364.57109841889 13.151 0.13961 13.151 13.098 13.238 0 6 3 2 0 0 0 0.64461 1 1872 1872 0.073264 0 1 109050 + 41326 17065 27461 27478 40764 40764 0.14975758679111095 SFLKGVMLGSI 11 Unmodified _SFLKGVMLGSI_ 0 0 0 C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant;ENSG00000171155|ENST00000304661|C1GALT1C1 C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3307495117188 2 576.328285 1150.64202 NaN NaN NaN NaN NaN NaN NaN 152.3 1 152.3 151.8 152.8 0 0 0 0 0.22683 1 30505 30505 10.8 0.72558 1 41327 348 27462 27479 40765 40765 0.07272102327874563 SFLLEAQNY 9 Unmodified _SFLLEAQNY_ 0 0 0 ENSG00000203740|ENST00000439373|NTMT2 ENSG00000203740|ENST00000439373|NTMT2 ENSG00000203740|ENST00000439373|NTMT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7713012695312 2 542.769114 1083.52368 0.32665 0.00017729 0.44437 0.00024119 0.77102 0.00041849 542.7693068588969 117.52 0.87914 117.52 117.12 118 0 53 24 3 0 0 0 0.60308 2 23167 23121;23167 18.146 8.7454 1 4354600 41328 7545 27463 27480 40766;40767 40767 -0.014745536562713824 SFLPGLPRLS 10 Unmodified _SFLPGLPRLS_ 0 0 0 REV__ENSG00000197683|ENST00000360542|KRTAP26-1 REV__ENSG00000197683|ENST00000360542|KRTAP26-1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7706909179688 2 543.818941 1085.62333 0.14114 7.6754E-05 -4.2643 -0.002319 -4.1232 -0.0022422 544.3197814654523 148.57 0.10585 143.41 143.36 143.47 -5.1557 4 2 2 0 0 0 0.69696 1 28763 28763 11.495 0 1 1317000 + 41329 19358 27464 27481 40768 40768 0.08394308748324875 SFLVAAAA 8 Unmodified _SFLVAAAA_ 0 0 0 ENST00000305123.5_1_2:227663679-227663853:-|nuORF ENST00000305123.5_1_2:227663679-227663853:-|nuORF ENST00000305123.5_1_2:227663679-227663853:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2126159667969 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 88.847 1 85.055 84.555 85.555 -3.7926 0 0 0 0.22934 1 17382 17382 0.68139 0.054566 1 41330 8597 27465 27482 40769 40769 0.027670567772247523 SFPRNAVCFY 10 Unmodified _SFPRNAVCFY_ 0 0 0 ENST00000297273.8_1_7:94178915-94180714:+|nuORF ENST00000297273.8_1_7:94178915-94180714:+|nuORF ENST00000297273.8_1_7:94178915-94180714:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2852783203125 2 602.284408 1202.55426 NaN NaN NaN NaN NaN NaN NaN 83.462 1 83.462 82.962 83.962 0 0 0 0 2.8426 1 16275 16275 0.26539 0.25943 1 41331 8519 27466 27483 40770 40770 -0.03891098542885629 SFPRNAVCFY 10 Unmodified _SFPRNAVCFY_ 0 0 0 ENST00000297273.8_1_7:94178915-94180714:+|nuORF ENST00000297273.8_1_7:94178915-94180714:+|nuORF ENST00000297273.8_1_7:94178915-94180714:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2846069335938 2 602.284408 1202.55426 NaN NaN NaN NaN NaN NaN NaN 94.133 1 94.133 93.633 94.633 0 0 0 0 2.8426 1 18431 18431 0.26539 0.19213 1 41332 8519 27466 27483 40771 40771 -0.03891098542885629 SFPRNAVCFY 10 Unmodified _SFPRNAVCFY_ 0 0 0 ENST00000297273.8_1_7:94178915-94180714:+|nuORF ENST00000297273.8_1_7:94178915-94180714:+|nuORF ENST00000297273.8_1_7:94178915-94180714:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2845458984375 2 602.284408 1202.55426 NaN NaN NaN NaN NaN NaN NaN 110.46 1 106.08 105.58 106.58 -4.3776 0 0 0 0.22588 1 21771 21771 6.2058 0 1 41333 8519 27466 27483 40772 40772 -0.03891098542885629 SFPRNAVCFY 10 Unmodified _SFPRNAVCFY_ 0 0 0 ENST00000297273.8_1_7:94178915-94180714:+|nuORF ENST00000297273.8_1_7:94178915-94180714:+|nuORF ENST00000297273.8_1_7:94178915-94180714:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.294921875 2 602.284408 1202.55426 NaN NaN NaN NaN NaN NaN NaN 78.902 1 75.226 74.726 75.726 -3.676 0 0 0 0.22588 1 15029 15029 10.074 3.3508 1 41334 8519 27466 27483 40773 40773 -0.03891098542885629 SFQKALPN 8 Unmodified _SFQKALPN_ 0 0 0 REV__nc|ENSG00000100354|Q9UPQ9-2|TNRC6B REV__nc|ENSG00000100354|Q9UPQ9-2|TNRC6B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.17474365234375 3 302.167749 903.481417 NaN NaN NaN NaN NaN NaN NaN 64.799 1 64.799 64.299 65.299 0 0 0 0 0.21486 1 12478 12478 0.45834 0 1 + 41335 14699 27467 27484 40774 40774 0.025815157259785337 SFQSALLY 8 Unmodified _SFQSALLY_ 0 0 0 ENSG00000113615|ENST00000398844|SEC24A ENSG00000113615|ENST00000398844|SEC24A ENSG00000113615|ENST00000398844|SEC24A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1651306152344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 154.65 1 149.4 148.9 149.9 -5.2526 0 0 0 0.23538 1 29985 29985 0.62683 0.21856 1 41336 2753 27468 27485 40775 40775 0.00354693631857117 SFQYTLGI 8 Unmodified _SFQYTLGI_ 0 0 0 REV__ENSG00000205413|ENST00000379958|SAMD9 REV__ENSG00000205413|ENST00000379958|SAMD9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 146.63 1 146.63 146.13 147.13 0 0 0 0 0.23837 1 29324 29324 0.12286 0 1 + 41337 19592 27469 27486 40776 40776 0.003546936318684857 SFQYTLGI 8 Unmodified _SFQYTLGI_ 0 0 0 REV__ENSG00000205413|ENST00000379958|SAMD9 REV__ENSG00000205413|ENST00000379958|SAMD9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1646423339844 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 154.79 1 154.79 154.29 155.29 0 0 0 0 0.23837 1 31023 31023 0.12286 0 1 + 41338 19592 27469 27486 40777 40777 0.003546936318684857 SFQYTLGI 8 Unmodified _SFQYTLGI_ 0 0 0 REV__ENSG00000205413|ENST00000379958|SAMD9 REV__ENSG00000205413|ENST00000379958|SAMD9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 157.44 1 157.44 156.94 157.94 0 0 0 0 0.23837 1 31600 31600 0.12286 0 1 + 41339 19592 27469 27486 40778 40778 0.003546936318684857 SFQYTLGI 8 Unmodified _SFQYTLGI_ 0 0 0 REV__ENSG00000205413|ENST00000379958|SAMD9 REV__ENSG00000205413|ENST00000379958|SAMD9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1643981933594 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 158.18 1 152.91 152.41 153.41 -5.2748 0 0 0 0.23837 1 30701 30701 0.12286 0 1 + 41340 19592 27469 27486 40779 40779 0.003546936318684857 SFQYTLGI 8 Unmodified _SFQYTLGI_ 0 0 0 REV__ENSG00000205413|ENST00000379958|SAMD9 REV__ENSG00000205413|ENST00000379958|SAMD9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16473388671875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 151.78 1 146.61 146.11 147.11 -5.1759 0 0 0 0.23837 1 29414 29414 0.12286 0 1 + 41341 19592 27469 27486 40780 40780 0.003546936318684857 SFRKGCDL 8 Unmodified _SFRKGCDL_ 0 0 0 REV__ENSG00000196456|ENST00000329630|ZNF775 REV__ENSG00000196456|ENST00000329630|ZNF775 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 463.19854736328125 2 463.231645 924.448736 NaN NaN NaN NaN NaN NaN NaN 132.66 1 127.81 127.31 128.31 -4.8527 0 0 0 0.22676 1 25485 25485 0.12286 0.058877 1 + 41342 19248 27470 27487 40781 40781 -0.016510146685163818 SFRRPRWQRRW 11 Unmodified _SFRRPRWQRRW_ 0 0 0 REV__ENSG00000089692|ENST00000203629|LAG3 REV__ENSG00000089692|ENST00000203629|LAG3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7828369140625 3 544.302786 1629.88653 0.28453 0.00015487 1.5754 0.00085752 1.86 0.0010124 544.638988834377 133.28 0.14053 128.46 128.38 128.52 -4.8138 5 3 2 0 0 0 0.89134 1 25664 25664 0.094841 0 1 1500100 + 41343 14533 27471 27488 40782 40782 0.09678161976512456 SFRSPFLC 8 Unmodified _SFRSPFLC_ 0 0 0 ENSG00000101474|ENST00000217456|APMAP ENSG00000101474|ENST00000217456|APMAP ENSG00000101474|ENST00000217456|APMAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7354431152344 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 170.73 1 170.73 170.23 171.23 0 0 0 0 0.21452 1 35123 35123 13.508 0 1 41344 2073 27472 27489 40783 40783 -0.020938266631333136 SFRTTMINP 9 Unmodified _SFRTTMINP_ 0 0 0 REV__ENST00000480436.5_1_20:13415759-13610725:-|nuORF REV__ENST00000480436.5_1_20:13415759-13610725:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2638549804688 2 533.771134 1065.52771 0.42838 0.00022865 -0.28884 -0.00015417 0.13954 7.4482E-05 533.7709622314045 45.508 0.84068 45.508 45.092 45.933 0 55 23 3 0 0 0 0.74655 1 8558 8558 3.5965 0 1 5066000 + 41345 14523 27473 27490 40784 40784 -0.002427874342401992 SFSHHWAG 8 Unmodified _SFSHHWAG_ 0 0 0 REV__ENST00000599814.5_1_19:46357662-46357740:-|nuORF REV__ENST00000599814.5_1_19:46357662-46357740:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1697998046875 3 310.140193 927.39875 NaN NaN NaN NaN NaN NaN NaN 18.88 1 17.245 16.745 17.745 -1.6351 0 0 0 0.2396 1 2818 2818 0 0 1 + 41346 23407 27474 27491 40785 40785 -0.06785381282145408 SFSNCNRT 8 Unmodified _SFSNCNRT_ 0 0 0 REV__ENST00000255381.2_1_17:10361024-10363530:-|nuORF REV__ENST00000255381.2_1_17:10361024-10363530:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16510009765625 3 310.136231 927.386864 NaN NaN NaN NaN NaN NaN NaN 71.415 1 71.415 70.915 71.915 0 0 0 0 0.2396 1 13836 13836 0 0 1 + 41347 20127 27475 27492 40786 40786 -0.07973366087651357 SFSPPLSPP 9 Unmodified _SFSPPLSPP_ 0 0 0 REV__ENST00000604081.1_1_12:54388423-54388660:-|nuORF REV__ENST00000604081.1_1_12:54388423-54388660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 68.801 1 68.801 68.301 69.301 0 0 0 0 0.23508 1 13309 13309 1.1933 0 1 + 41348 23441 27476 27493 40787 40787 0.003546936318684857 SFSPPLSPP 9 Unmodified _SFSPPLSPP_ 0 0 0 REV__ENST00000604081.1_1_12:54388423-54388660:-|nuORF REV__ENST00000604081.1_1_12:54388423-54388660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 66.859 1 63.363 62.863 63.863 -3.4965 0 0 0 0.23508 1 12538 12538 1.1933 0 1 + 41349 23441 27476 27493 40788 40788 0.003546936318684857 SFSPPLSPP 9 Unmodified _SFSPPLSPP_ 0 0 0 REV__ENST00000604081.1_1_12:54388423-54388660:-|nuORF REV__ENST00000604081.1_1_12:54388423-54388660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.165283203125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 71.299 1 67.719 67.219 68.219 -3.5798 0 0 0 0.23508 1 13444 13444 1.1933 0 1 + 41350 23441 27476 27493 40789 40789 0.003546936318684857 SFSPPLSPP 9 Unmodified _SFSPPLSPP_ 0 0 0 REV__ENST00000604081.1_1_12:54388423-54388660:-|nuORF REV__ENST00000604081.1_1_12:54388423-54388660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 68.887 1 65.497 64.997 65.997 -3.3903 0 0 0 0.23508 1 13015 13015 1.1933 0 1 + 41351 23441 27476 27493 40790 40790 0.003546936318684857 SFSPPLSPP 9 Unmodified _SFSPPLSPP_ 0 0 0 REV__ENST00000604081.1_1_12:54388423-54388660:-|nuORF REV__ENST00000604081.1_1_12:54388423-54388660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1645202636719 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 71.348 1 67.881 67.381 68.381 -3.467 0 0 0 0.23508 1 13521 13521 1.1933 0 1 + 41352 23441 27476 27493 40791 40791 0.003546936318684857 SFSPPLSPP 9 Unmodified _SFSPPLSPP_ 0 0 0 REV__ENST00000604081.1_1_12:54388423-54388660:-|nuORF REV__ENST00000604081.1_1_12:54388423-54388660:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2303466796875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 71.683 1 68.145 67.645 68.645 -3.5385 0 0 0 0.23508 1 13591 13591 1.1933 0 1 + 41353 23441 27476 27493 40792 40792 0.003546936318684857 SFSRFNMQY 9 Unmodified _SFSRFNMQY_ 0 0 0 REV__ENST00000349792.9_1_1:151221216-151221447:+|nuORF REV__ENST00000349792.9_1_1:151221216-151221447:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.267822265625 2 590.266216 1178.51788 NaN NaN NaN NaN NaN NaN NaN 21.945 1 21.945 21.445 22.445 0 0 0 0 0.23508 1 3693 3693 7.2892 0.93513 1 + 41354 20764 27477 27494 40793 40793 -0.0642397543961124 SFSYTYVGPSH 11 Unmodified _SFSYTYVGPSH_ 0 0 0 ENSG00000166845|ENST00000620105|C18orf54;nc|ENSG00000166845|Q8IYD9|LAS2 ENSG00000166845|ENST00000620105|C18orf54 ENSG00000166845|ENST00000620105|C18orf54 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7802124023438 2 622.782753 1243.55095 NaN NaN NaN NaN NaN NaN NaN 167.43 1 167.43 166.93 167.93 0 0 0 0 0.22501 1 34214 34214 12.241 4.0851 1 41355 5753 27478 27495 40794 40794 -0.06108070115897135 SFVAPEVVV 9 Unmodified _SFVAPEVVV_ 0 0 0 ENST00000354179.8_2_5:176723055-176723301:+|nuORF ENST00000354179.8_2_5:176723055-176723301:+|nuORF ENST00000354179.8_2_5:176723055-176723301:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1810302734375 3 316.179654 945.517133 NaN NaN NaN NaN NaN NaN NaN 170.13 1 165.26 164.76 165.76 -4.873 0 0 0 0.23508 1 33650 33650 2.9952 0 1 41356 8938 27479 27496 40795 40795 0.04219553183008884 SFVINITYE 9 Unmodified _SFVINITYE_ 0 0 0 ENST00000520817.5_1_8:41367772-41367976:+|nuORF ENST00000520817.5_1_8:41367772-41367976:+|nuORF ENST00000520817.5_1_8:41367772-41367976:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79443359375 2 543.279315 1084.54408 0.14264 7.7496E-05 -3.6795 -0.001999 -3.5368 -0.0019215 543.778738333415 148.99 0.10071 143.83 143.78 143.88 -5.1557 4 2 2 0 0 0 0.81703 1 28857 28857 10.074 8.2297 1 1637400 41357 10838 27480 27497 40796 40796 0.005186170035130999 SFVTTEGTR 9 Unmodified _SFVTTEGTR_ 0 0 0 REV__ENSG00000164620|ENST00000297164|RELL2 REV__ENSG00000164620|ENST00000297164|RELL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.1808776855469 3 333.169818 996.487624 NaN NaN NaN NaN NaN NaN NaN 110.72 1 110.72 110.22 111.22 0 0 0 0 0.23508 1 21777 21777 2.2828 0.80087 1 + 41358 17696 27481 27498 40797 40797 -0.010760108331396623 SFVTTEGTR 9 Unmodified _SFVTTEGTR_ 0 0 0 REV__ENSG00000164620|ENST00000297164|RELL2 REV__ENSG00000164620|ENST00000297164|RELL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 333.21710205078125 3 333.169818 996.487624 NaN NaN NaN NaN NaN NaN NaN 115.02 1 110.7 110.2 111.2 -4.3136 0 0 0 0.23508 1 22145 22145 4.5289 2.0304 1 + 41359 17696 27481 27498 40798 40798 -0.010760108331396623 SFVTTEGTR 9 Unmodified _SFVTTEGTR_ 0 0 0 REV__ENSG00000164620|ENST00000297164|RELL2 REV__ENSG00000164620|ENST00000297164|RELL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 333.20648193359375 3 333.169818 996.487624 NaN NaN NaN NaN NaN NaN NaN 120.97 1 116.44 115.94 116.94 -4.5305 0 0 0 0.23508 1 23294 23294 2.2828 0.63015 1 + 41360 17696 27481 27498 40799 40799 -0.010760108331396623 SFWLALVGCV 10 Unmodified _SFWLALVGCV_ 0 0 0 nc|ENSG00000151617|P25101-4|EDNRA;ENSG00000151617|ENST00000651419|EDNRA;EDNRA|p.Y106Tfs*6|1|0.29|ENSG00000151617|chr4:147485995-147485995|T/-|frameshift_variant;nc|ENSG00000151617|P25101-2|EDNRA;nc|ENSG00000151617|P25101-3|EDNRA;EDNRA|p.R340Yfs*22|1|0.07|ENSG00000151617|chr4:147539933-147539934|-/TA|frameshift_variant nc|ENSG00000151617|P25101-4|EDNRA nc|ENSG00000151617|P25101-4|EDNRA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7883911132812 2 547.788795 1093.56304 NaN NaN NaN NaN NaN NaN NaN 153.64 1 148.87 148.37 149.37 -4.7684 0 0 0 0.22552 1 30533 30533 18.146 1.2041 1 41361 4877 27482 27499 40800 40800 0.019998750935883436 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1653137207031 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 99.294 1 99.294 98.794 99.794 0 0 0 0 0.23837 1 19473 19473 0.12286 0 1 41362 11068 27483 27500 40801 40801 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 151.19 1 151.19 150.69 151.69 0 0 0 0 0.23837 1 30277 30277 0.12286 0 1 41363 11068 27483 27500 40802 40802 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.886 1 71.521 71.021 72.021 -3.3643 0 0 0 0.21486 1 14612 14612 1.8442 0 1 41364 11068 27483 27500 40803 40803 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 82.392 1 78.784 78.284 79.284 -3.6079 0 0 0 0.21486 1 16103 16103 1.8442 0.19162 1 41365 11068 27483 27500 40804 40804 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16448974609375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 84.655 1 80.991 80.491 81.491 -3.6641 0 0 0 0.23837 1 16547 16547 0.12286 0 1 41366 11068 27483 27500 40805 40805 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1646728515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 87.729 1 83.937 83.437 84.437 -3.7926 0 0 0 0.21486 1 17159 17159 1.8442 0.19162 1 41367 11068 27483 27500 40806 40806 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1653747558594 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 94.452 1 90.462 89.962 90.962 -3.9907 0 0 0 0.21486 1 18507 18507 1.8442 0.19162 1 41368 11068 27483 27500 40807 40807 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 104.79 1 100.57 100.07 101.07 -4.2183 0 0 0 0.23837 1 20617 20617 0.12286 0 1 41369 11068 27483 27500 40808 40808 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 107.45 1 103.13 102.63 103.63 -4.32 0 0 0 0.23837 1 21163 21163 0.12286 0 1 41370 11068 27483 27500 40809 40809 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1652526855469 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 109.06 1 104.68 104.18 105.18 -4.3776 0 0 0 0.21486 1 21494 21494 1.8442 0 1 41371 11068 27483 27500 40810 40810 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1645812988281 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 109.3 1 104.92 104.42 105.42 -4.3776 0 0 0 0.23837 1 21541 21541 0.12286 0 1 41372 11068 27483 27500 40811 40811 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 110.03 1 105.65 105.15 106.15 -4.3776 0 0 0 0.23837 1 21685 21685 0.12286 0.049601 1 41373 11068 27483 27500 40812 40812 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1715393066406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 124.35 1 119.77 119.27 120.27 -4.5757 0 0 0 0.21486 1 24519 24519 1.8442 0.19162 1 41374 11068 27483 27500 40813 40813 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 130.2 1 125.56 125.06 126.06 -4.6359 0 0 0 0.23837 1 25660 25660 0.12286 0.12286 1 41375 11068 27483 27500 40814 40814 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 139.1 1 134.45 133.95 134.95 -4.6439 0 0 0 0.21486 1 27460 27460 1.8442 0 1 41376 11068 27483 27500 40815 40815 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 142.28 1 137.63 137.13 138.13 -4.656 0 0 0 0.21486 1 28121 28121 1.8442 0.19162 1 41377 11068 27483 27500 40816 40816 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16400146484375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 154.19 1 149.43 148.93 149.93 -4.7684 0 0 0 0.23837 1 30647 30647 0.12286 0.049601 1 41378 11068 27483 27500 40817 40817 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 156.06 1 151.28 150.78 151.78 -4.7791 0 0 0 0.23837 1 31027 31027 0.12286 0.12286 1 41379 11068 27483 27500 40818 40818 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 156.07 1 151.29 150.79 151.79 -4.7791 0 0 0 0.21486 1 31030 31030 1.8442 0.19162 1 41380 11068 27483 27500 40819 40819 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 90.967 1 86.872 86.372 87.372 -4.0946 0 0 0 0.23837 1 17332 17332 0.12286 0 1 41381 11068 27483 27500 40820 40820 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 91.436 1 87.342 86.842 87.842 -4.0946 0 0 0 0.23837 1 17421 17421 0.12286 0 1 41382 11068 27483 27500 40821 40821 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16461181640625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 92.625 1 88.482 87.982 88.982 -4.1435 0 0 0 0.23837 1 17648 17648 0.12286 0 1 41383 11068 27483 27500 40822 40822 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646728515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 95.21 1 91.019 90.519 91.519 -4.1911 0 0 0 0.23837 1 18168 18168 0.12286 0 1 41384 11068 27483 27500 40823 40823 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16534423828125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 155.1 1 149.81 149.31 150.31 -5.2854 0 0 0 0.23837 1 30080 30080 0.12286 0 1 41385 11068 27483 27500 40824 40824 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 101.5 1 97.51 97.01 98.01 -3.9895 0 0 0 0.23837 1 19502 19502 0.12286 0 1 41386 11068 27483 27500 40825 40825 0.003546936318684857 SFYKEGVV 8 Unmodified _SFYKEGVV_ 0 0 0 ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF ENST00000540468.5_1_2:73480008-73480116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 108.01 1 103.87 103.37 104.37 -4.135 0 0 0 0.23837 1 20777 20777 0.12286 0 1 41387 11068 27483 27500 40826 40826 0.003546936318684857 SFYVSLLLLP 10 Unmodified _SFYVSLLLLP_ 0 0 0 ENST00000272462.2_1_2:110841508-110841715:-|nuORF ENST00000272462.2_1_2:110841508-110841715:-|nuORF ENST00000272462.2_1_2:110841508-110841715:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.324462890625 2 576.339175 1150.6638 NaN NaN NaN NaN NaN NaN NaN 157.05 1 157.05 156.55 157.55 0 0 0 0 2.8426 1 31517 31517 0.20733 0 1 41388 8409 27484 27501 40827 40827 0.0944923034810472 SGANKYLY 8 Unmodified _SGANKYLY_ 0 0 0 ENSG00000104941|ENST00000221538|RSPH6A;RSPH6A|p.A632Pfs*47|1|0.3|ENSG00000104941|chr19:45800468-45800468|C/-|frameshift_variant ENSG00000104941|ENST00000221538|RSPH6A ENSG00000104941|ENST00000221538|RSPH6A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2317810058594 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 74.05 1 70.373 69.873 70.873 -3.6764 0 0 0 0.23538 1 14003 14003 1.7423 1.6194 1 41389 2269 27485 27502 40828 40828 -0.010864770279567892 SGAPAAAAPT 10 Unmodified _SGAPAAAAPT_ 0 0 0 REV__ENSG00000105135|ENST00000263383|ILVBL REV__ENSG00000105135|ENST00000263383|ILVBL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3629760742188 1 813.410108 812.402832 0.48076 0.00039105 0.074089 6.0265E-05 0.55485 0.00045132 813.4100882528329 32.753 0.69939 30.606 30.306 31.006 -2.1468 45 19 3 0 0 0 0.48849 1 5664 5664 1.9275 0.18523 1 6546600 + 41390 14963 27486 27503 40829 40829 -0.01087336579098519 SGATSRPP 8 Unmodified _SGATSRPP_ 0 0 0 nc|ENSG00000139266|Q86YJ5-2|MARCHF9;ENSG00000139266|ENST00000266643|MARCHF9 nc|ENSG00000139266|Q86YJ5-2|MARCHF9 nc|ENSG00000139266|Q86YJ5-2|MARCHF9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 386.1904602050781 2 386.701035 771.387516 0.61321 0.00023713 -0.16027 -6.1978E-05 0.45293 0.00017515 386.70092292912784 28.121 0.38605 26.165 25.944 26.33 -1.9561 13 10 2 0 0 0 0.89712 1 5042 5042 0.0082765 0 1 871940 41391 4233 27487 27504 40830 40830 -0.007322033762875435 SGCGGGPP 8 Unmodified _SGCGGGPP_ 0 0 0 REV__ENSG00000121871|ENST00000475390|SLITRK3 REV__ENSG00000121871|ENST00000475390|SLITRK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7666015625 1 631.250437 630.24316 0.38933 0.00024576 -2.9119 -0.0018381 -2.5226 -0.0015924 631.2521576537147 97.391 0.098801 93.156 93.09 93.189 -4.2348 4 2 2 0 0 0 8448 1 18595 18595 0 0 1 325810 + 41392 15667 27488 27505 40831 40831 -0.0867516812793383 SGDEKYCQD 9 Unmodified _SGDEKYCQD_ 0 0 0 REV__nc|ENSG00000090316|Q7L5Y9-4|MAEA REV__nc|ENSG00000090316|Q7L5Y9-4|MAEA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2577514648438 2 522.700571 1043.38659 0.49969 0.00026119 -0.26648 -0.00013929 0.23321 0.0001219 522.7004286399088 48.364 1.0568 48.364 47.858 48.915 0 50 29 2 0 0 0 0.80264 1 9101 9101 12.241 1.4411 1 3474800 + 41393 23964 27489 27506 40832 40832 -0.13336830598154847 SGDGVTHTV 9 Unmodified _SGDGVTHTV_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;POTEE|p.P864L|1|0.35|ENSG00000188219|chr2:131264046-131264046|C/T|missense_variant;ENST00000457622.1_1_6:46172676-46173294:+|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23468017578125 2 436.709057 871.40356 0.40741 0.00017792 -0.34903 -0.00015243 0.058379 2.5495E-05 436.7088725330972 21.879 0.32596 20.405 20.231 20.557 -1.4742 19 8 3 0 0 0 0.19271 1 3704 3704 37.974 16.227 1 1471000 41394 1521 27490 27507 40833 40833 -0.03728541930047413 SGDGVTHTV 9 Unmodified _SGDGVTHTV_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;POTEE|p.P864L|1|0.35|ENSG00000188219|chr2:131264046-131264046|C/T|missense_variant;ENST00000457622.1_1_6:46172676-46173294:+|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2336730957031 2 436.709057 871.40356 -0.19745 -8.623E-05 0.29181 0.00012744 0.094355 4.1206E-05 436.70913952223117 21.81 0.31602 20.425 20.246 20.562 -1.3847 13 8 2 0 0 0 0.80521 1 3428 3428 15.847 4.2069 1 461160 41395 1521 27490 27507 40834 40834 -0.03728541930047413 SGDGVTHTV 9 Unmodified _SGDGVTHTV_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;POTEE|p.P864L|1|0.35|ENSG00000188219|chr2:131264046-131264046|C/T|missense_variant;ENST00000457622.1_1_6:46172676-46173294:+|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2355041503906 2 436.709057 871.40356 -0.80384 -0.00035104 1.0348 0.00045189 0.23092 0.00010084 436.70939046876924 22.077 0.23669 20.356 20.223 20.46 -1.7211 9 6 2 0 0 0 0.85913 1 3466 3466 6.2058 0 1 278060 41396 1521 27490 27507 40835 40835 -0.03728541930047413 SGDLGPLTR 9 Unmodified _SGDLGPLTR_ 0 0 0 nc|ENSG00000158560|O14576-5|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1;DYNC1I1|p.Q206Tfs*30|1|0.1|ENSG00000158560|chr7:95977579-95977580|-/A|frameshift_variant;DYNC1I1|p.H315Pfs*2|1|0.22|ENSG00000158560|chr7:95995992-95995993|-/C|frameshift_variant;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1 nc|ENSG00000158560|O14576-5|DYNC1I1 nc|ENSG00000158560|O14576-5|DYNC1I1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22760009765625 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 45.079 1 42.331 41.831 42.831 -2.7475 0 0 0 0.19657 1 8174 8174 4.897 0 1 41397 12399 27491 27508 40836 40836 0.02148310375048368 SGDRGVLKDV 10 Unmodified _SGDRGVLKDV_ 0 0 0 nc|ENSG00000077800|O75344-3|FKBP6;nc|ENSG00000077800|O75344-2|FKBP6;ENSG00000077800|ENST00000252037|FKBP6 nc|ENSG00000077800|O75344-3|FKBP6 nc|ENSG00000077800|O75344-3|FKBP6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7019653320312 2 523.285463 1044.55637 NaN NaN NaN NaN NaN NaN NaN 48.173 1 48.173 47.673 48.673 0 0 0 0 0.22588 1 9091 9091 9.3831 0 1 41398 1563 27492 27509 40837 40837 0.03587653466570373 SGDVELVLAY 10 Unmodified _SGDVELVLAY_ 0 0 0 ENSG00000213638|ENST00000329478|ADAT3;nc|ENSG00000213638|Q96EY9|ADAT3 ENSG00000213638|ENST00000329478|ADAT3 ENSG00000213638|ENST00000329478|ADAT3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2699584960938 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 72.347 1 72.347 71.847 72.847 0 0 0 0 0.22544 1 14027 14027 19.257 3.1079 1 41399 7701 27493 27510 40838 40838 0.009303131409069465 SGFVEKVY 8 Unmodified _SGFVEKVY_ 0 0 0 REV__nc|ENSG00000136897|Q8N5N7-2|MRPL50 REV__nc|ENSG00000136897|Q8N5N7-2|MRPL50 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 90.216 1 86.172 85.672 86.672 -4.0443 0 0 0 0.21486 1 17185 17185 1.6526 0 1 + 41400 16360 27494 27511 40839 40839 0.00354693631857117 SGFVEKVY 8 Unmodified _SGFVEKVY_ 0 0 0 REV__nc|ENSG00000136897|Q8N5N7-2|MRPL50 REV__nc|ENSG00000136897|Q8N5N7-2|MRPL50 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 95.733 1 91.542 91.042 92.042 -4.1911 0 0 0 0.21486 1 18274 18274 1.6526 0 1 + 41401 16360 27494 27511 40840 40840 0.00354693631857117 SGFVEKVY 8 Unmodified _SGFVEKVY_ 0 0 0 REV__nc|ENSG00000136897|Q8N5N7-2|MRPL50 REV__nc|ENSG00000136897|Q8N5N7-2|MRPL50 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 129.86 1 125.02 124.52 125.52 -4.8355 0 0 0 0.21486 1 24930 24930 1.6526 0 1 + 41402 16360 27494 27511 40841 40841 0.00354693631857117 SGFVEKVY 8 Unmodified _SGFVEKVY_ 0 0 0 REV__nc|ENSG00000136897|Q8N5N7-2|MRPL50 REV__nc|ENSG00000136897|Q8N5N7-2|MRPL50 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 129.53 1 124.79 124.29 125.29 -4.7408 0 0 0 0.2386 1 24926 24926 0.25148 0 1 + 41403 16360 27494 27511 40842 40842 0.00354693631857117 SGGAGLSQLTA 11 Unmodified _SGGAGLSQLTA_ 0 0 0 REV__ENSG00000126709|ENST00000361157|IFI6 REV__ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.248291015625 2 481.251089 960.487624 -0.20207 -9.7244E-05 -1.0036 -0.00048299 -1.2057 -0.00058023 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 0.47834 1 7443 7443 38.615 0.43918 1 85144000 + 41404 15862 27495 27512 40843 40843 0.005799891668402779 SGGDAGGC 8 Unmodified _SGGDAGGC_ 0 0 0 ENST00000344119.6_1_9:140330651-140331360:-|nuORF;ENST00000461823.1_1_9:140330651-140331261:-|nuORF ENST00000344119.6_1_9:140330651-140331360:-|nuORF ENST00000344119.6_1_9:140330651-140331360:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7728271484375 1 623.208966 622.201689 0.7223 0.00045014 -0.87722 -0.00054669 -0.15492 -9.6546E-05 623.2067277454184 170.94 0.10674 166.07 165.98 166.09 -4.873 4 2 2 0 0 0 0.89856 2 33849 33846;33849 0 0 1 4693300 41405 8885 27496 27513 40844;40845 40845 -0.12452348887268272 SGGDGGLG 8 Unmodified _SGGDGGLG_ 0 0 0 ENST00000431489.5_1_2:62932928-62934072:+|nuORF ENST00000431489.5_1_2:62932928-62934072:+|nuORF ENST00000431489.5_1_2:62932928-62934072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.13677978515625 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 147.51 1 142.8 142.3 143.3 -4.7095 0 0 0 0.21486 1 29271 29271 0.79363 0 1 41406 9785 27497 27514 40846 40846 -0.06348129601428809 SGGGGDVA 8 Unmodified _SGGGGDVA_ 0 0 0 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1644287109375 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 145.64 1 145.64 145.14 146.14 0 0 0 0 0.2396 1 29111 29111 0.12286 0 1 41407 12473 27498 27515 40847 40847 -0.06348129601428809 SGGGGDVA 8 Unmodified _SGGGGDVA_ 0 0 0 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1644287109375 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 145.65 1 145.65 145.15 146.15 0 0 0 0 0.21486 1 29113 29113 0.79363 0 1 41408 12473 27498 27515 40848 40848 -0.06348129601428809 SGGGGDVA 8 Unmodified _SGGGGDVA_ 0 0 0 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1365051269531 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 149.78 1 144.58 144.08 145.08 -5.1994 0 0 0 0.21486 1 29013 29013 0.79363 0 1 41409 12473 27498 27515 40849 40849 -0.06348129601428809 SGGGGDVA 8 Unmodified _SGGGGDVA_ 0 0 0 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.13665771484375 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 150.08 1 144.88 144.38 145.38 -5.1994 0 0 0 0.21486 1 29078 29078 0.79363 0 1 41410 12473 27498 27515 40850 40850 -0.06348129601428809 SGGGGDVA 8 Unmodified _SGGGGDVA_ 0 0 0 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1365661621094 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 150.4 1 145.2 144.7 145.7 -5.1994 0 0 0 0.21486 1 29144 29144 0.79363 0 1 41411 12473 27498 27515 40851 40851 -0.06348129601428809 SGGGGDVA 8 Unmodified _SGGGGDVA_ 0 0 0 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1634521484375 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 151.39 1 146.15 145.65 146.65 -5.2365 0 0 0 0.2396 1 29343 29343 0.12286 0 1 41412 12473 27498 27515 40852 40852 -0.06348129601428809 SGGGGDVA 8 Unmodified _SGGGGDVA_ 0 0 0 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1363525390625 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 149.88 1 144.76 144.26 145.26 -5.1204 0 0 0 0.21486 1 29043 29043 0.79363 0 1 41413 12473 27498 27515 40853 40853 -0.06348129601428809 SGGGGDVA 8 Unmodified _SGGGGDVA_ 0 0 0 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1636047363281 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 150.01 1 144.89 144.39 145.39 -5.1204 0 0 0 0.2396 1 29068 29068 0.12286 0 1 41414 12473 27498 27515 40854 40854 -0.06348129601428809 SGGGGDVA 8 Unmodified _SGGGGDVA_ 0 0 0 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1640930175781 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 151 1 145.82 145.32 146.32 -5.1759 0 0 0 0.21486 1 29270 29270 0.79363 0 1 41415 12473 27498 27515 40855 40855 -0.06348129601428809 SGGGGDVA 8 Unmodified _SGGGGDVA_ 0 0 0 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647644042969 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 151.29 1 146.11 145.61 146.61 -5.1759 0 0 0 0.21486 1 29330 29330 0.79363 0 1 41416 12473 27498 27515 40856 40856 -0.06348129601428809 SGGGGDVA 8 Unmodified _SGGGGDVA_ 0 0 0 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 nc|ENSG00000174945|Q400G9-2|AMZ1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 152.59 1 147.42 146.92 147.92 -5.1759 0 0 0 0.2396 1 29576 29576 0.12286 0 1 41417 12473 27498 27515 40857 40857 -0.06348129601428809 SGGGGGGCG 9 Unmodified _SGGGGGGCG_ 0 0 0 REV__ENSG00000156017|ENST00000376834|CARNMT1 REV__ENSG00000156017|ENST00000376834|CARNMT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 609.2069091796875 1 608.2093 607.202024 0.28066 0.0001707 -2.2797 -0.0013865 -1.9991 -0.0012158 608.2104739681088 6.1679 0.70852 5.5416 5.081 5.7895 -0.62626 27 19 2 0 0 0 0.83871 1 439 439 0 0 1 186970 + 41418 17239 27499 27516 40858 40858 -0.11728929167406932 SGGGGGGCG 9 Unmodified _SGGGGGGCG_ 0 0 0 REV__ENSG00000156017|ENST00000376834|CARNMT1 REV__ENSG00000156017|ENST00000376834|CARNMT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 609.2060546875 1 608.2093 607.202024 0.28081 0.00017079 -1.9601 -0.0011922 -1.6793 -0.0010214 608.2102214631506 6.7928 0.74984 6.1136 5.7011 6.451 -0.67913 30 20 2 0 0 0 0.83871 1 497 497 0 0 1 341790 + 41419 17239 27499 27516 40859 40859 -0.11728929167406932 SGGGGGGCG 9 Unmodified _SGGGGGGCG_ 0 0 0 REV__ENSG00000156017|ENST00000376834|CARNMT1 REV__ENSG00000156017|ENST00000376834|CARNMT1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 608.2093 607.202024 0.28066 0.0001707 -2.2797 -0.0013865 -1.9991 -0.0012158 608.2104739681088 6.1679 0.70852 5.5416 5.081 5.7895 -0.62626 0.015586 -0.0010694 NaN 0 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 186970 + 41420 17239 27499 27516 -0.11728929167406932 SGGGGGGCG 9 Unmodified _SGGGGGGCG_ 0 0 0 REV__ENSG00000156017|ENST00000376834|CARNMT1 REV__ENSG00000156017|ENST00000376834|CARNMT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 608.2093 607.202024 -1.4931 -0.00090811 0.45066 0.00027409 -1.0424 -0.00063402 608.2116260442723 6.5253 0.85501 5.5105 4.9031 5.7582 -1.0148 -0.015586 0.00059123 NaN 0 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 311360 + 41421 17239 27499 27516 -0.11728929167406932 SGGGGVVV 8 Unmodified _SGGGGVVV_ 0 0 0 TMEM64|p.F257Lfs*19|1|0.37|ENSG00000180694|chr8:90645135-90645135|A/-|frameshift_variant;nc|ENSG00000180694|Q6YI46-4|TMEM64;TMEM64|p.C315Lfs*30|1|0.59|ENSG00000180694|chr8:90631559-90631560|-/A|frameshift_variant;ENSG00000180694|ENST00000458549|TMEM64 TMEM64|p.F257Lfs*19|1|0.37|ENSG00000180694|chr8:90645135-90645135|A/-|frameshift_variant TMEM64|p.F257Lfs*19|1|0.37|ENSG00000180694|chr8:90645135-90645135|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.16009521484375 2 316.174121 630.33369 NaN NaN NaN NaN NaN NaN NaN 8.1745 1 7.4954 6.9954 7.9954 -0.67913 0 0 0 0.21486 1 822 822 0.69038 0 1 41422 6688 27500 27517 40860 40860 0.003736241920023531 SGGSGKAR 8 Unmodified _SGGSGKAR_ 0 0 0 ENSG00000136352|ENST00000354822|NKX2-1 ENSG00000136352|ENST00000354822|NKX2-1 ENSG00000136352|ENST00000354822|NKX2-1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.210693359375 2 360.193377 718.372201 NaN NaN NaN NaN NaN NaN NaN 49.293 1 46.412 45.912 46.912 -2.8811 0 0 0 0.2396 1 9337 9337 0.30703 0 1 41423 4004 27501 27518 40861 40861 0.0017492982651674538 SGHAKHTAGP 10 Unmodified _SGHAKHTAGP_ 0 0 0 REV__ENST00000506530.5_1_4:1323389-1323932:+|nuORF REV__ENST00000506530.5_1_4:1323389-1323932:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76507568359375 2 481.743765 961.472977 NaN NaN NaN NaN NaN NaN NaN 63.182 1 60.184 59.684 60.684 -2.9975 0 0 0 0.22588 1 12202 12202 10.074 0 1 + 41424 22491 27502 27519 40862 40862 -0.009300381906314215 SGHCCEER 8 Unmodified _SGHCCEER_ 0 0 0 REV__ENST00000156471.9_1_15:35256483-35261839:-|nuORF REV__ENST00000156471.9_1_15:35256483-35261839:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.4496765136719 3 307.449821 919.327635 NaN NaN NaN NaN NaN NaN NaN 34.667 1 34.667 34.167 35.167 0 0 0 0 0.21486 1 6350 6350 0.40072 0 1 + 41425 19977 27503 27520 40863 40863 -0.13525585373486138 SGHECSCE 8 Unmodified _SGHECSCE_ 0 0 0 REV__nc|ENSG00000130962|O14668-2|PRRG1 REV__nc|ENSG00000130962|O14668-2|PRRG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 426.5652770996094 2 426.136553 850.258552 NaN NaN NaN NaN NaN NaN NaN 120.25 1 120.25 119.75 120.75 0 0 0 0 0.2396 1 23704 23704 0.30703 0 1 + 41426 24037 27504 27521 40864 40864 -0.17256669393043467 SGISIGIIVP 10 Unmodified _SGISIGIIVP_ 0 0 0 tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1 tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1 tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7259521484375 2 478.294768 954.574983 0.49504 0.00023678 -0.20878 -9.9857E-05 0.28627 0.00013692 478.2947581255885 116.41 0.98039 112.05 111.39 112.37 -4.3585 32 27 2 0 0 0 0.871 1 22284 22284 10.074 0 1 1087000 41427 25963 27505 27522 40865 40865 0.09587815108420727 SGITQEALP 9 Unmodified _SGITQEALP_ 0 0 0 CON__ENSEMBL:ENSBTAP00000023402 CON__ENSEMBL:ENSBTAP00000023402 CON__ENSEMBL:ENSBTAP00000023402 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23284912109375 2 458.242732 914.470912 0.54107 0.00024794 -0.16533 -7.5762E-05 0.37574 0.00017218 458.2426248242289 30.327 1.7832 28.252 27.556 29.339 -2.0743 150 50 5 0 0 0 0.57447 1 5305 5305 14.838 0 1 61841000 + 41428 643 27506 27523 40866 40866 0.010254882808908405 SGKAHLPRP 9 Unmodified _SGKAHLPRP_ 0 0 0 nc|ENSG00000125319|Q8N3J3-3|HROB;ENSG00000125319|ENST00000585683|HROB;nc|ENSG00000125319|Q8N3J3|HROB nc|ENSG00000125319|Q8N3J3-3|HROB nc|ENSG00000125319|Q8N3J3-3|HROB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77880859375 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 140.26 1 135.62 135.12 136.12 -4.6439 0 0 0 0.19643 1 27694 27694 0.12781 0.11954 1 41429 3349 27507 27524 40867 40867 0.06343715602781685 SGKGGGKG 8 Unmodified _SGKGGGKG_ 0 0 0 REV__nc|ENSG00000163214|Q6P158-2|DHX57 REV__nc|ENSG00000163214|Q6P158-2|DHX57 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1771240234375 2 324.177195 646.339838 NaN NaN NaN NaN NaN NaN NaN 44.291 1 41.501 41.001 42.001 -2.79 0 0 0 0.2396 1 8321 8321 0 0 1 + 41430 13678 27508 27525 40868 40868 0.002521424235169434 SGKGLKTCK 9 Unmodified _SGKGLKTCK_ 0 0 0 MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant;nc|ENSG00000169057|P51608|MECP2;MECP2|p.K449Sfs*33|1|0.2|ENSG00000169057|chrX:154030482-154030482|T/-|frameshift_variant;ENSG00000169057|ENST00000453960|MECP2 MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53759765625 2 461.262945 920.511337 NaN NaN NaN NaN NaN NaN NaN 44.189 1 44.189 43.689 44.689 0 0 0 0 0.19711 1 8285 8285 0.40827 0.2854 1 41431 5961 27509 27526 40869 40869 0.04790131399681741 SGLREEGLEP 10 Unmodified _SGLREEGLEP_ 0 0 0 nc|ENSG00000180336|A2RUB1-5|MEIOC;ENSG00000180336|ENST00000409122|MEIOC nc|ENSG00000180336|A2RUB1-5|MEIOC nc|ENSG00000180336|A2RUB1-5|MEIOC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7793579101562 2 543.774928 1085.5353 0.32211 0.00017516 -0.012415 -6.7508E-06 0.3097 0.00016841 544.2748481676981 102.47 1.2366 98.149 97.573 98.809 -4.3208 68 35 3 0 0 0 0.44731 2 19653 19601;19653 27.629 1.6081 1 4719700 41432 6668 27510 27527 40870;40871 40871 -0.004043566329528403 SGLREEGLEP 10 Unmodified _SGLREEGLEP_ 0 0 0 nc|ENSG00000180336|A2RUB1-5|MEIOC;ENSG00000180336|ENST00000409122|MEIOC nc|ENSG00000180336|A2RUB1-5|MEIOC nc|ENSG00000180336|A2RUB1-5|MEIOC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77880859375 2 543.774928 1085.5353 0.5808 0.00031582 0.38887 0.00021146 0.96967 0.00052728 544.2751144150842 102.11 1.2848 98.088 97.598 98.882 -4.0212 73 36 3 0 0 0 0.39316 1 19636 19636 31.268 5.2476 1 4736900 41433 6668 27510 27527 40872 40872 -0.004043566329528403 SGLTLPQAS 9 Unmodified _SGLTLPQAS_ 0 0 0 ENST00000563854.1_2_16:1820656-1821336:-|nuORF ENST00000563854.1_2_16:1820656-1821336:-|nuORF ENST00000563854.1_2_16:1820656-1821336:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2283935546875 2 437.23745 872.460347 -0.13187 -5.7657E-05 0.34636 0.00015144 0.21449 9.3783E-05 437.2376488576376 93.452 1.033 89.461 88.968 90.001 -3.9907 66 29 3 0 0 0 0.33512 1 18411 18411 1.2148 0 1 18021000 41434 11338 27511 27528 40873 40873 0.019015056264720442 SGNNGSPS 8 Unmodified _SGNNGSPS_ 0 0 0 REV__nc|ENSG00000164741|Q96QB1-4|DLC1 REV__nc|ENSG00000164741|Q96QB1-4|DLC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.21282958984375 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 101.68 1 97.363 96.863 97.863 -4.3208 0 0 0 0.23749 1 19460 19460 0.12286 0 1 + 41435 13688 27512 27529 40874 40874 -0.0822164606104252 SGNSGGSR 8 Unmodified _SGNSGGSR_ 0 0 0 GNPTAB|p.F1228Lfs*5|2|0.13|ENSG00000111670|chr12:101749110-101749110|A/-|frameshift_variant;ENSG00000111670|ENST00000299314|GNPTAB;nc|ENSG00000161249|Q6E0U4-7|DMKN;nc|ENSG00000161249|Q6E0U4-3|DMKN;nc|ENSG00000161249|Q6E0U4-5|DMKN;nc|ENSG00000161249|Q6E0U4-6|DMKN;DMKN|p.G455Efs*19|1|0.29|ENSG00000161249|chr19:35498893-35498893|C/-|frameshift_variant;ENSG00000161249|ENST00000339686|DMKN;CON__A3EZ82 GNPTAB|p.F1228Lfs*5|2|0.13|ENSG00000111670|chr12:101749110-101749110|A/-|frameshift_variant GNPTAB|p.F1228Lfs*5|2|0.13|ENSG00000111670|chr12:101749110-101749110|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.211669921875 2 361.164816 720.31508 NaN NaN NaN NaN NaN NaN NaN 74.297 1 74.297 73.797 74.797 0 0 0 0 0.23899 1 14424 14424 1.3295 0 1 + 41436 2633 27513 27530 40875 40875 -0.0562653744985937 SGPADTRPH 9 Unmodified _SGPADTRPH_ 0 0 0 ENST00000458001.2_1_13:114537591-114537669:+|nuORF ENST00000458001.2_1_13:114537591-114537669:+|nuORF ENST00000458001.2_1_13:114537591-114537669:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.15045166015625 3 313.154391 936.441343 NaN NaN NaN NaN NaN NaN NaN 109.59 1 105.41 104.91 105.91 -4.1826 0 0 0 0.23508 1 21091 21091 2.7352 1.0826 1 41437 10042 27514 27531 40876 40876 -0.02942030944564067 SGPAIPFA 8 Unmodified _SGPAIPFA_ 0 0 0 REV__ENST00000467906.5_1_6:43042431-43042626:+|nuORF REV__ENST00000467906.5_1_6:43042431-43042626:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 380.1958312988281 2 380.205421 758.39629 NaN NaN NaN NaN NaN NaN NaN 66.692 1 63.584 63.084 64.084 -3.1086 0 0 0 0.23711 1 12929 12929 0.62683 0 1 + 41438 21990 27515 27532 40877 40877 0.007427702601830788 SGPGPGVG 8 Unmodified _SGPGPGVG_ 0 0 0 REV__MZT2A|p.L70Sfs*16|1|0.37|ENSG00000173272|chr2:131491987-131491987|G/-|frameshift_variant REV__MZT2A|p.L70Sfs*16|1|0.37|ENSG00000173272|chr2:131491987-131491987|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1656188964844 2 314.158471 626.30239 NaN NaN NaN NaN NaN NaN NaN 137.22 1 132.29 131.79 132.79 -4.9216 0 0 0 0.23899 1 26377 26377 1.3295 0 1 + 41439 17093 27516 27533 40878 40878 -0.02570948842094367 SGPLPPPLNVS 11 Unmodified _SGPLPPPLNVS_ 0 0 0 ENST00000533173.1_1_8:145676847-145677204:-|nuORF ENST00000533173.1_1_8:145676847-145677204:-|nuORF ENST00000533173.1_1_8:145676847-145677204:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2134094238281 3 359.86948 1076.58661 -0.31734 -0.0001142 2.6611 0.00095766 2.3438 0.00084345 360.20486854272076 19.319 0.24723 17.993 17.827 18.074 -1.3251 8 6 2 0 0 0 0.68373 1 2938 2938 12.856 1.3381 1 339610 41440 10990 27517 27534 40879 40879 0.05138012131760661 SGPLWKCKY 9 Unmodified _SGPLWKCKY_ 0 0 0 REV__ENST00000378535.4_1_12:88890181-88890376:-|nuORF REV__ENST00000378535.4_1_12:88890181-88890376:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2650146484375 2 541.278595 1080.54264 NaN NaN NaN NaN NaN NaN NaN 99.596 1 95.64 95.14 96.14 -3.9564 0 0 0 0.19652 1 19125 19125 0.40827 0 1 + 41441 21116 27518 27535 40880 40880 0.0055870443377443735 SGPSVGVVEM 10 Unmodified _SGPSVGVVEM_ 0 0 0 ENST00000422734.1_1_10:24446874-24447108:+|nuORF ENST00000422734.1_1_10:24446874-24447108:+|nuORF ENST00000422734.1_1_10:24446874-24447108:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7225646972656 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 119.93 1 115.41 114.91 115.91 -4.5221 0 0 0 2.8426 1 23648 23648 0.51642 0 1 41442 9682 27519 27536 40881 40881 -0.02317871453783482 SGPYLVLTL 9 Unmodified _SGPYLVLTL_ 0 0 0 REV__ENST00000491863.1_1_22:46725205-46725322:+|nuORF REV__ENST00000491863.1_1_22:46725205-46725322:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.781982421875 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 100.84 1 96.539 96.039 97.039 -4.297 0 0 0 0.22621 1 19292 19292 15.847 0.078963 1 + 41443 22324 27520 27537 40882 40882 0.06612126217078185 SGQMYQQYQQ 10 Unmodified _SGQMYQQYQQ_ 0 0 0 ENST00000481203.1_1_3:100463567-100467372:+|nuORF ENST00000481203.1_1_3:100463567-100467372:+|nuORF ENST00000481203.1_1_3:100463567-100467372:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7574462890625 2 630.769319 1259.52409 NaN NaN NaN NaN NaN NaN NaN 72.049 1 72.049 71.549 72.549 0 0 0 0 2.8426 1 13963 13963 0.26539 0.23918 1 41444 10370 27521 27538 40883 40883 -0.09529501998736123 SGQSLACGELN 11 Unmodified _SGQSLACGELN_ 0 0 0 REV__nc|ENSG00000060491|Q9NZT2-2|OGFR REV__nc|ENSG00000060491|Q9NZT2-2|OGFR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.165968 1077.47607 NaN NaN NaN NaN NaN NaN NaN 130.21 1 125.37 124.87 125.87 -4.8355 0 0 0 0.23698 1 24998 24998 2.6312 0.13275 1 + 41445 14143 27522 27539 40884 40884 -0.059565759187762524 SGRVRGRRQQ 10 Unmodified _SGRVRGRRQQ_ 0 0 0 ENST00000541712.5_1_12:123344649-123344826:+|nuORF ENST00000541712.5_1_12:123344649-123344826:+|nuORF ENST00000541712.5_1_12:123344649-123344826:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 400.03857421875 3 400.565788 1198.67553 -0.13816 -5.5342E-05 -1.2382 -0.00049599 -1.3764 -0.00055134 400.56533704503556 95.798 1.5911 95.798 95.109 96.7 0 54 22 4 0 0 0 0.91149 1 18668 18668 0.62683 0.62683 1 4878900 41446 11082 27523 27540 40885 40885 0.0841428493465628 SGRYSRTPAA 10 Unmodified _SGRYSRTPAA_ 0 0 0 ENST00000609803.2_1_12:46120731-46120878:-|nuORF ENST00000609803.2_1_12:46120731-46120878:-|nuORF ENST00000609803.2_1_12:46120731-46120878:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2708129882812 2 533.275429 1064.53631 NaN NaN NaN NaN NaN NaN NaN 117.86 1 117.86 117.36 118.36 0 0 0 0 2.8426 1 23217 23217 0.26539 0 1 41447 11771 27524 27541 40886 40886 0.0066190252659907856 SGSCMDCSESD 11 Unmodified _SGSCMDCSESD_ 0 0 0 ENST00000520647.5_1_5:153789305-153796529:+|nuORF;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10 ENST00000520647.5_1_5:153789305-153796529:+|nuORF ENST00000520647.5_1_5:153789305-153796529:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 560.6650390625 2 560.665014 1119.31547 NaN NaN NaN NaN NaN NaN NaN 177.7 1 172.79 172.29 173.29 -4.9088 0 0 0 0.22632 1 35439 35439 0 0 1 41448 5552 27525 27542 40887 40887 -0.23941034689482876 SGSDGCDC 8 Unmodified _SGSDGCDC_ 0 0 0 REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 372.115478515625 2 372.102178 742.189804 NaN NaN NaN NaN NaN NaN NaN 81.449 1 81.449 80.949 81.949 0 0 0 0 0.21486 1 15862 15862 0 0 1 + 41449 13345 27526 27543 40888 40888 -0.19160333692764198 SGSDGCDC 8 Unmodified _SGSDGCDC_ 0 0 0 REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 372.1009216308594 2 372.102178 742.189804 NaN NaN NaN NaN NaN NaN NaN 172.66 1 172.66 172.16 173.16 0 0 0 0 0.21486 1 35656 35656 0 0 1 + 41450 13345 27526 27543 40889 40889 -0.19160333692764198 SGSDGCDC 8 Unmodified _SGSDGCDC_ 0 0 0 REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 372.11614990234375 2 372.102178 742.189804 NaN NaN NaN NaN NaN NaN NaN 54.386 1 51.251 50.751 51.751 -3.1352 0 0 0 0.21486 1 10031 10031 0 0 1 + 41451 13345 27526 27543 40890 40890 -0.19160333692764198 SGSDGCDC 8 Unmodified _SGSDGCDC_ 0 0 0 REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 372.1100158691406 2 372.102178 742.189804 NaN NaN NaN NaN NaN NaN NaN 99.651 1 95.363 94.863 95.863 -4.2886 0 0 0 0.21486 1 19051 19051 0 0 1 + 41452 13345 27526 27543 40891 40891 -0.19160333692764198 SGSDGCDC 8 Unmodified _SGSDGCDC_ 0 0 0 REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 372.1146240234375 2 372.102178 742.189804 NaN NaN NaN NaN NaN NaN NaN 100.49 1 96.195 95.695 96.695 -4.297 0 0 0 0.21486 1 19223 19223 0 0 1 + 41453 13345 27526 27543 40892 40892 -0.19160333692764198 SGSDGCDC 8 Unmodified _SGSDGCDC_ 0 0 0 REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 372.1061096191406 2 372.102178 742.189804 NaN NaN NaN NaN NaN NaN NaN 158.04 1 152.77 152.27 153.27 -5.2748 0 0 0 0.21486 1 30675 30675 0 0 1 + 41454 13345 27526 27543 40893 40893 -0.19160333692764198 SGSDGCDC 8 Unmodified _SGSDGCDC_ 0 0 0 REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 372.1007385253906 2 372.102178 742.189804 NaN NaN NaN NaN NaN NaN NaN 171.3 1 166.38 165.88 166.88 -4.9149 0 0 0 0.21486 1 33911 33911 0 0 1 + 41455 13345 27526 27543 40894 40894 -0.19160333692764198 SGSDGCDC 8 Unmodified _SGSDGCDC_ 0 0 0 REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 372.10089111328125 2 372.102178 742.189804 NaN NaN NaN NaN NaN NaN NaN 174.73 1 169.84 169.34 170.34 -4.8916 0 0 0 0.21486 1 34795 34795 0 0 1 + 41456 13345 27526 27543 40895 40895 -0.19160333692764198 SGSHDCCA 8 Unmodified _SGSHDCCA_ 0 0 0 REV__nc|ENSG00000148481|Q9H8M7-2|MINDY3 REV__nc|ENSG00000148481|Q9H8M7-2|MINDY3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 390.3482971191406 2 390.125988 778.237423 NaN NaN NaN NaN NaN NaN NaN 7.9158 1 7.9158 7.4158 8.4158 0 0 0 0 0.21486 1 772 772 0 0 1 + 41457 16978 27527 27544 40896 40896 -0.16056634701919847 SGSHGGAAG 9 Unmodified _SGSHGGAAG_ 0 0 0 ENST00000564098.5_1_16:1796593-1797040:+|nuORF ENST00000564098.5_1_16:1796593-1797040:+|nuORF ENST00000564098.5_1_16:1796593-1797040:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 350.6587219238281 2 350.654084 699.293616 NaN NaN NaN NaN NaN NaN NaN 112.75 1 108.22 107.72 108.72 -4.5259 0 0 0 0.19622 1 21643 21643 0.96228 0.65524 1 41458 11340 27528 27545 40897 40897 -0.06805922478577031 SGSKDAPVPG 10 Unmodified _SGSKDAPVPG_ 0 0 0 ENST00000480340.1_1_1:153904922-153905273:-|nuORF;ENST00000462423.1_1_1:153904922-153905503:-|nuORF;ENSG00000198837|ENST00000361217|DENND4B ENST00000480340.1_1_1:153904922-153905273:-|nuORF ENST00000480340.1_1_1:153904922-153905273:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22454833984375 2 457.732532 913.45051 -0.36136 -0.00016541 0.50496 0.00023113 0.1436 6.5728E-05 457.7327531807679 39.844 0.91867 37.295 36.896 37.815 -2.5491 72 25 4 0 0 0 0.70357 1 7339 7339 10.824 2.9138 1 26305000 41459 7504 27529 27546 40898 40898 -0.009676823789050104 SGSLKKRKQ 9 Unmodified _SGSLKKRKQ_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000477977.1_1_10:103920762-103923575:+|nuORF ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.8612976074219 3 344.548852 1030.62473 -0.29337 -0.00010108 -1.3696 -0.00047189 -1.663 -0.00057297 344.54762464301024 25.239 0.47816 25.239 24.879 25.358 0 19 13 2 0 0 0 0.64253 1 4394 4394 0.029283 0 1 781810 41460 5701 27530 27547 40899 40899 0.1106394283708596 SGSLKKRKQ 9 Unmodified _SGSLKKRKQ_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000477977.1_1_10:103920762-103923575:+|nuORF ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 344.548852 1030.62473 -0.58618 -0.00020197 -3.4287 -0.0011814 -4.0149 -0.0013833 344.547659670536 26.952 0.27864 25.03 24.877 25.155 -1.9222 -0.10422 -0.00018868 NaN 0.029283 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 409250 41461 5701 27530 27547 0.1106394283708596 SGSPASLPPG 10 Unmodified _SGSPASLPPG_ 0 0 0 REV__ENST00000570752.5_1_16:2986644-2986740:+|nuORF REV__ENST00000570752.5_1_16:2986644-2986740:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 435.7235412597656 2 435.2218 868.429047 -0.039646 -1.7255E-05 -0.11592 -5.0451E-05 -0.15557 -6.7706E-05 435.22169966766415 56.728 1.3942 56.728 56.081 57.475 0 58 39 2 0 0 0 1.1181 1 10907 10907 3.5927 1.6652 1 1838800 + 41462 23163 27531 27548 40900 40900 -0.010430674076133073 SGTFILSDYSN 11 Unmodified _SGTFILSDYSN_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant;DNHD1|p.R1358Afs*11|1|0.16|ENSG00000179532|chr11:6545007-6545007|C/-|frameshift_variant ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R1358Afs*11|1|0.16|ENSG00000179532|chr11:6545007-6545007|C/-|frameshift_variant ENSG00000179532|ENST00000254579|DNHD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2910766601562 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 60.863 1 57.929 57.429 58.429 -2.9333 0 0 0 0.22765 1 11720 11720 10.151 0.076642 1 41463 6634;877 27532 27549 40901 40901 -0.047637936983846885 SGTLRFGIID 10 Unmodified _SGTLRFGIID_ 0 0 0 ENSG00000134255|ENST00000357172|CEPT1 ENSG00000134255|ENST00000357172|CEPT1 ENSG00000134255|ENST00000357172|CEPT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2168273925781 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 116.35 1 111.87 111.37 112.37 -4.486 0 0 0 0.22588 1 22942 22942 1.5923 0 1 41464 3837 27533 27550 40902 40902 0.0461712798901317 SGVALYRSDPS 11 Unmodified _SGVALYRSDPS_ 0 0 0 REV__nc|ENSG00000165521|Q05BV3|EML5 REV__nc|ENSG00000165521|Q05BV3|EML5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3389892578125 2 576.288202 1150.56185 0.40673 0.00023439 0.01852 1.0673E-05 0.42525 0.00024506 576.2880799861199 33.605 0.1732 31.389 31.319 31.492 -2.2158 6 4 2 0 0 0 0.68099 1 5859 5859 13.042 2.2185 1 450510 + 41465 17778 27534 27551 40903 40903 -0.0074066774163839 SGVFRPEM 8 Unmodified _SGVFRPEM_ 0 0 0 FARSA|p.L444V|1|0.25|ENSG00000179115|chr19:12924209-12924209|G/C|missense_variant;nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA FARSA|p.L444V|1|0.25|ENSG00000179115|chr19:12924209-12924209|G/C|missense_variant FARSA|p.L444V|1|0.25|ENSG00000179115|chr19:12924209-12924209|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5418395996094 2 461.726195 921.437837 NaN NaN NaN NaN NaN NaN NaN 86.215 1 82.488 81.988 82.988 -3.727 0 0 0 0.20618 1 16851 16851 20.454 7.9221 1 41466 6612 27535 27552 40904 40904 -0.02602417042783145 SGVHPPAP 8 Unmodified _SGVHPPAP_ 0 0 0 ENSG00000104897|ENST00000221494|SF3A2 ENSG00000104897|ENST00000221494|SF3A2 ENSG00000104897|ENST00000221494|SF3A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.200927734375 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 79.24 1 75.73 75.23 76.23 -3.5102 0 0 0 0.21486 1 15478 15478 5.7604 0 1 41467 2265 27536 27553 40905 40905 -0.0029899802534600894 SGVHPPAP 8 Unmodified _SGVHPPAP_ 0 0 0 ENSG00000104897|ENST00000221494|SF3A2 ENSG00000104897|ENST00000221494|SF3A2 ENSG00000104897|ENST00000221494|SF3A2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2109069824219 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 99.108 1 95.151 94.651 95.651 -3.9564 0 0 0 0.21486 1 19026 19026 5.7604 0 1 41468 2265 27536 27553 40906 40906 -0.0029899802534600894 SGVQKAVTRT 10 Unmodified _SGVQKAVTRT_ 0 0 0 nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK nc|ENSG00000122008|Q9UBT6-3|POLK nc|ENSG00000122008|Q9UBT6-3|POLK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6834106445312 2 523.80128 1045.58801 NaN NaN NaN NaN NaN NaN NaN 156.9 1 151.62 151.12 152.12 -5.2712 0 0 0 0.22527 1 30435 30435 21.537 2.28 1 41469 3203 27537 27554 40907 40907 0.0670364622053512 SGVYLCVARN 10 Unmodified _SGVYLCVARN_ 0 0 0 IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant;ENSG00000152580|ENST00000282466|IGSF10;nc|ENSG00000152580|Q6WRI0-2|IGSF10;ENST00000495443.1_1_3:151154479-151158406:-|nuORF IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2777099609375 2 541.276583 1080.53861 NaN NaN NaN NaN NaN NaN NaN 55.014 1 51.879 51.379 52.379 -3.1352 0 0 0 2.8426 1 10160 10160 6.6304 6.0035 1 41470 4932 27538 27555 40908 40908 0.0015661494005598797 SHADLRWY 8 Unmodified _SHADLRWY_ 0 0 0 REV__ENST00000339024.8_2_21:30464771-30503236:+|nuORF REV__ENST00000339024.8_2_21:30464771-30503236:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.689208984375 2 524.253966 1046.49338 -0.22739 -0.00011921 -2.5785 -0.0013518 -2.8059 -0.001471 524.2521072536867 43.994 0.47694 41.204 40.982 41.459 -2.79 16 13 2 0 0 0 0.99494 1 8304 8304 13.508 4.1248 1 573880 + 41471 20689 27539 27556 40909 40909 -0.028008675308228703 SHALVPKEI 9 Unmodified _SHALVPKEI_ 0 0 0 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.00537109375 3 331.862437 992.565481 -0.21382 -7.0959E-05 0.033651 1.1167E-05 -0.18017 -5.9791E-05 331.86235841992055 63.133 0.54007 60.135 59.844 60.384 -2.9975 25 15 2 0 0 0 0.73814 1 12205 12205 4.5289 0.93237 1 1090100 41472 5680 27540 27557 40910 40910 0.06890046822900331 SHAPTYISLY 10 Unmodified _SHAPTYISLY_ 0 0 0 REV__CES2|p.Q491Sfs*27|1|0.27|ENSG00000172831|chr16:66942242-66942242|T/-|frameshift_variant REV__CES2|p.Q491Sfs*27|1|0.27|ENSG00000172831|chr16:66942242-66942242|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.339111328125 2 576.290214 1150.56587 NaN NaN NaN NaN NaN NaN NaN 62.172 1 62.172 61.672 62.672 0 0 0 0 0.19577 1 11935 11935 29.082 1.4528 1 + 41473 13385 27541 27558 40911 40911 -0.0033857824789720325 SHCCCSLC 8 Unmodified _SHCCCSLC_ 0 0 0 ENST00000352171.11_1_1:52344234-52344333:-|nuORF ENST00000352171.11_1_1:52344234-52344333:-|nuORF ENST00000352171.11_1_1:52344234-52344333:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 428.13482666015625 2 428.134444 854.254335 NaN NaN NaN NaN NaN NaN NaN 147.98 1 142.92 142.42 143.42 -5.0595 0 0 0 0.21486 1 28657 28657 0.79363 0 1 41474 8928 27542 27559 40912 40912 -0.17862173411958793 SHCFCCYC 8 Unmodified _SHCFCCYC_ 0 0 0 REV__SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant REV__SYVN1|p.N368Qfs*129|1|0.33|ENSG00000162298|chr11:65130663-65130664|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.4299621582031 3 322.430605 964.269985 NaN NaN NaN NaN NaN NaN NaN 31.136 1 31.136 30.636 31.636 0 0 0 0 0.2396 1 5614 5614 0 0 1 + 41475 24765 27543 27560 40913 40913 -0.21357886894929834 SHDDNHSV 8 Unmodified _SHDDNHSV_ 0 0 0 nc|ENSG00000173093|Q8NA47-2|CCDC63;ENSG00000173093|ENST00000308208|CCDC63 nc|ENSG00000173093|Q8NA47-2|CCDC63 nc|ENSG00000173093|Q8NA47-2|CCDC63 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 455.7571105957031 2 455.686113 909.357673 NaN NaN NaN NaN NaN NaN NaN 63.863 1 63.863 63.363 64.363 0 0 0 0 0.23487 1 12288 12288 0.12286 0.11459 1 41476 6264 27544 27561 40914 40914 -0.10063187112280048 SHDECQDALNI 11 Unmodified _SHDECQDALNI_ 0 0 0 ENSG00000273136|ENST00000620612|NBPF26;NBPF12|p.C423Vfs*91|1|0.35|ENSG00000268043|chr1:146969553-146969553|G/-|frameshift_variant;NBPF10|p.D878Kfs*17|1|0.38|ENSG00000271425|chr1:146121624-146121625|-/TT|frameshift_variant;NBPF10|p.Q877Lfs*19|1|0.38|ENSG00000271425|chr1:146121626-146121627|-/GGTTA|frameshift_variant;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271425|ENST00000583866|NBPF10 ENSG00000273136|ENST00000620612|NBPF26 ENSG00000273136|ENST00000620612|NBPF26 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7655029296875 2 622.764234 1243.51392 NaN NaN NaN NaN NaN NaN NaN 161.49 1 156.7 156.2 157.2 -4.7938 0 0 0 0.22632 1 32117 32117 0.58532 0.17705 1 41477 8009 27545 27562 40915 40915 -0.09810109723957794 SHDLGLAH 8 Unmodified _SHDLGLAH_ 0 0 0 REV__ENSG00000100985|ENST00000372330|MMP9 REV__ENSG00000100985|ENST00000372330|MMP9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.23651123046875 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 114.9 1 110.43 109.93 110.93 -4.4726 0 0 0 0.21486 1 22645 22645 5.2307 0.47466 1 + 41478 14753 27546 27563 40916 40916 -0.016205144849664066 SHDPPCFA 8 Unmodified _SHDPPCFA_ 0 0 0 REV__ENST00000530791.5_1_11:65688874-65688940:+|nuORF REV__ENST00000530791.5_1_11:65688874-65688940:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2276611328125 2 437.18162 872.348688 NaN NaN NaN NaN NaN NaN NaN 55.725 1 55.725 55.225 56.225 0 0 0 0 0.23749 1 10642 10642 0.12286 0 1 + 41479 22759 27547 27564 40917 40917 -0.09259252002323137 SHDRERSRERR 11 Unmodified _SHDRERSRERR_ 0 0 0 REV__nc|ENSG00000111605|Q16630-3|CPSF6 REV__nc|ENSG00000111605|Q16630-3|CPSF6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3817749023438 2 742.382885 1482.75122 NaN NaN NaN NaN NaN NaN NaN 135.7 1 131.06 130.56 131.56 -4.6399 0 0 0 0.22632 1 26769 26769 0.0059557 0 1 + 41480 15250 27548 27565 40918 40918 0.02915217324243713 SHEALHVG 8 Unmodified _SHEALHVG_ 0 0 0 REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24188232421875 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 57.169 1 54.274 53.774 54.774 -2.8944 0 0 0 0.23025 1 10971 10971 0.25148 0.2432 1 + 41481 14592 27549 27566 40919 40919 -0.01620514484955038 SHEALHVG 8 Unmodified _SHEALHVG_ 0 0 0 REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.1261901855469 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 114.85 1 110.37 109.87 110.87 -4.4726 0 0 0 0.21486 1 22634 22634 5.2307 0 1 + 41482 14592 27549 27566 40920 40920 -0.01620514484955038 SHEALHVG 8 Unmodified _SHEALHVG_ 0 0 0 REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2406311035156 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 115.92 1 111.43 110.93 111.93 -4.486 0 0 0 0.2343 1 22854 22854 0.063987 0 1 + 41483 14592 27549 27566 40921 40921 -0.01620514484955038 SHEALHVG 8 Unmodified _SHEALHVG_ 0 0 0 REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2375183105469 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 57.088 1 53.899 53.399 54.399 -3.1895 0 0 0 0.21452 1 10592 10592 13.508 4.1604 1 + 41484 14592 27549 27566 40922 40922 -0.01620514484955038 SHEALHVG 8 Unmodified _SHEALHVG_ 0 0 0 REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.23956298828125 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 115.08 1 110.52 110.02 111.02 -4.555 0 0 0 0.21486 1 22094 22094 9.3474 3.1417 1 + 41485 14592 27549 27566 40923 40923 -0.01620514484955038 SHEALHVG 8 Unmodified _SHEALHVG_ 0 0 0 REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2508544921875 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 114.7 1 110.39 109.89 110.89 -4.3136 0 0 0 0.22934 1 22084 22084 0.68139 0.55853 1 + 41486 14592 27549 27566 40924 40924 -0.01620514484955038 SHEALHVG 8 Unmodified _SHEALHVG_ 0 0 0 REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2369384765625 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 132.13 1 127.33 126.83 127.83 -4.799 0 0 0 0.21452 1 25439 25439 13.508 4.1604 1 + 41487 14592 27549 27566 40925 40925 -0.01620514484955038 SHELKKMLR 9 Unmodified _SHELKKMLR_ 0 0 0 REV__nc|ENSG00000107242|O14986-3|PIP5K1B REV__nc|ENSG00000107242|O14986-3|PIP5K1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2217712402344 3 381.221859 1140.64375 NaN NaN NaN NaN NaN NaN NaN 30.904 1 28.787 28.287 29.287 -2.1167 0 0 0 0.23508 1 5596 5596 7.1017 2.5729 1 + 41488 15079 27550 27567 40926 40926 0.07905156136484948 SHFQWRQH 8 Unmodified _SHFQWRQH_ 0 0 0 REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.53497314453125 3 375.849413 1124.52641 0.34867 0.00013105 0.7687 0.00028892 1.1174 0.00041997 375.84974079565194 29.826 0.52223 27.934 27.685 28.207 -1.8928 31 14 3 0 0 0 1.0248 1 5134 5134 6.7232 1.8262 1 733680 + 41489 18410 27551 27568 40927 40927 -0.03087240688091697 SHFQWRQH 8 Unmodified _SHFQWRQH_ 0 0 0 REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.849413 1124.52641 0.30681 0.00011531 1.0106 0.00037984 1.3174 0.00049515 375.84973949805004 29.967 0.41364 27.85 27.634 28.048 -2.1167 -0.023446 -7.6067E-05 NaN 3.5965 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 732420 + 41490 18410 27551 27568 -0.03087240688091697 SHFQWRQH 8 Unmodified _SHFQWRQH_ 0 0 0 REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 375.849413 1124.52641 -0.13998 -5.261E-05 1.4219 0.00053443 1.282 0.00048182 375.8499579397312 29.911 0.45051 27.837 27.624 28.074 -2.0743 -0.036658 0.00038771 NaN 3.5965 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 545500 + 41491 18410 27551 27568 -0.03087240688091697 SHGCGGGG 8 Unmodified _SHGCGGGG_ 0 0 0 REV__ENST00000307271.3_1_7:150171706-150174432:+|nuORF REV__ENST00000307271.3_1_7:150171706-150174432:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7485961914062 1 631.225285 630.218008 0.40686 0.00025682 2.689 0.0016974 3.0959 0.0019542 631.2265349491009 146.98 0.20753 146.98 146.84 147.05 0 6 5 2 0 0 0 1.0282 1 29371 29371 0 0 1 1090400 + 41492 20446 27552 27569 40928 40928 -0.1118922293048854 SHGEKSRK 8 Unmodified _SHGEKSRK_ 0 0 0 REV__nc|ENSG00000050405|Q9UHB6-2|LIMA1 REV__nc|ENSG00000050405|Q9UHB6-2|LIMA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1695251464844 3 310.170152 927.488627 NaN NaN NaN NaN NaN NaN NaN 40.2 1 40.2 39.7 40.7 0 0 0 0 0.23626 1 7475 7475 0.12286 0 1 + 41493 14085 27553 27570 40929 40929 0.021982483264196162 SHGPCVPP 8 Unmodified _SHGPCVPP_ 0 0 0 ENST00000599938.5_1_19:8942076-8942876:-|nuORF ENST00000599938.5_1_19:8942076-8942876:-|nuORF ENST00000599938.5_1_19:8942076-8942876:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 397.18560791015625 2 397.186706 792.358859 NaN NaN NaN NaN NaN NaN NaN 120.98 1 116.45 115.95 116.95 -4.5221 0 0 0 0.21486 1 23850 23850 2.5775 0 1 41494 11696 27554 27571 40930 40930 -0.04562644277086747 SHGPCVPP 8 Unmodified _SHGPCVPP_ 0 0 0 ENST00000599938.5_1_19:8942076-8942876:-|nuORF ENST00000599938.5_1_19:8942076-8942876:-|nuORF ENST00000599938.5_1_19:8942076-8942876:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 397.4909362792969 2 397.186706 792.358859 NaN NaN NaN NaN NaN NaN NaN 74.723 1 71.129 70.629 71.629 -3.594 0 0 0 0.23749 1 14196 14196 0.0082765 0 1 41495 11696 27554 27571 40931 40931 -0.04562644277086747 SHHKCRVI 8 Unmodified _SHHKCRVI_ 0 0 0 nc|ENSG00000204644|Q9NU63|ZFP57;ZFP57|p.R423Gfs*10|1|0.22|ENSG00000204644|chr6:29672593-29672593|G/-|frameshift_variant;nc|ENSG00000204644|Q9NU63-2|ZFP57;ENSG00000204644|ENST00000376883|ZFP57 nc|ENSG00000204644|Q9NU63|ZFP57 nc|ENSG00000204644|Q9NU63|ZFP57 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2747802734375 2 490.266353 978.518153 NaN NaN NaN NaN NaN NaN NaN 69.262 1 69.262 68.762 69.762 0 0 0 0 0.21486 1 13405 13405 7.9102 0.62092 1 41496 7602 27555 27572 40932 40932 0.028034890709136562 SHHKLRAM 8 Unmodified _SHHKLRAM_ 0 0 0 SMAD3|p.E102K|1|0.2|ENSG00000166949|chr15:67164992-67164992|G/A|missense_variant SMAD3|p.E102K|1|0.2|ENSG00000166949|chr15:67164992-67164992|G/A|missense_variant SMAD3|p.E102K|1|0.2|ENSG00000166949|chr15:67164992-67164992|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2665100097656 2 490.266353 978.518153 NaN NaN NaN NaN NaN NaN NaN 132.05 1 127.25 126.75 127.75 -4.799 0 0 0 0.21452 1 25422 25422 13.508 0.97634 1 41497 25696 27556 27573 40933 40933 0.02803489070925025 SHHVPISELKY 11 Unmodified _SHHVPISELKY_ 0 0 0 ENST00000496461.5_1_16:58752244-58768198:-|nuORF ENST00000496461.5_1_16:58752244-58768198:-|nuORF ENST00000496461.5_1_16:58752244-58768198:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23614501953125 3 437.234822 1308.68264 NaN NaN NaN NaN NaN NaN NaN 62.325 1 62.325 61.825 62.825 0 0 0 0 0.23698 1 11968 11968 2.6312 0.13275 1 41498 10578 27557 27574 40934 40934 0.040641599718583166 SHIFSHHS 8 Unmodified _SHIFSHHS_ 0 0 0 ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant;ENSG00000197863|ENST00000356725|ZNF790 ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 476.2246398925781 2 476.225208 950.435863 0.029093 1.3855E-05 0.43821 0.00020869 0.46731 0.00022254 476.22537279824536 54.615 1.4015 51.48 50.766 52.167 -3.1352 105 39 4 0 0 0 8448 1 10216 10216 1.4551 1.4551 1 118390000 41499 7407 27558 27575 40935 40935 -0.04133709736379387 SHIFSHHS 8 Unmodified _SHIFSHHS_ 0 0 0 ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant;ENSG00000197863|ENST00000356725|ZNF790 ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 476.225208 950.435863 0.015154 7.2165E-06 -0.081654 -3.8886E-05 -0.066501 -3.1669E-05 476.2251232846637 51.173 1.2567 51.173 50.641 51.898 0 -0.15652 -0.00043835 NaN 1.4551 118 35 4 NaN NaN NaN NaN 0 NaN NaN 0 161650000 41500 7407 27558 27575 -0.04133709736379387 SHIFSHHS 8 Unmodified _SHIFSHHS_ 0 0 0 ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant;ENSG00000197863|ENST00000356725|ZNF790 ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 476.225208 950.435863 -0.24679 -0.00011753 0.67469 0.0003213 0.4279 0.00020378 476.2254672874805 54.172 1.1699 51.288 50.736 51.906 -2.8837 -0.041116 0.00028203 NaN 1.4551 105 33 4 NaN NaN NaN NaN 0 NaN NaN 0 114480000 41501 7407 27558 27575 -0.04133709736379387 SHIFSHHS 8 Unmodified _SHIFSHHS_ 0 0 0 ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant;ENSG00000197863|ENST00000356725|ZNF790 ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 476.225208 950.435863 -0.025648 -1.2214E-05 0.46512 0.0002215 0.43947 0.00020929 476.2253567892851 54.515 1.3998 51.377 50.816 52.216 -3.1377 0.047336 8.2431E-05 NaN 1.4551 111 39 4 NaN NaN NaN NaN 0 NaN NaN 0 89361000 41502 7407 27558 27575 -0.04133709736379387 SHIIKHKTLI 10 Unmodified _SHIIKHKTLI_ 0 0 0 REV__ENSG00000196350|ENST00000601693|ZNF729 REV__ENSG00000196350|ENST00000601693|ZNF729 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 595.376708984375 2 595.374415 1188.73428 NaN NaN NaN NaN NaN NaN NaN 174.37 1 174.37 173.87 174.87 0 0 0 0 2.8426 1 36093 36093 0.043787 0.042406 1 + 41503 19236 27559 27576 40936 40936 0.1474594845642514 SHIQEIIEP 9 Unmodified _SHIQEIIEP_ 0 0 0 REV__AKAP12|p.P150H|1|0.37|ENSG00000131016|chr6:151348840-151348840|C/A|missense_variant REV__AKAP12|p.P150H|1|0.37|ENSG00000131016|chr6:151348840-151348840|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2824096679688 2 533.282389 1064.55022 -0.13365 -7.1271E-05 -0.013142 -7.0084E-06 -0.14679 -7.828E-05 533.2823404092156 93.601 2.0454 93.601 92.477 94.522 0 182 58 4 0 0 0 0.07738 1 18468 18468 62.573 0 1 68958000 + 41504 12996 27560 27577 40937 40937 0.020531352350417365 SHIRKHQIPK 10 Unmodified _SHIRKHQIPK_ 0 0 0 REV__ZNF331|p.L258P|1|0.08|ENSG00000130844|chr19:53577333-53577333|T/C|missense_variant REV__ZNF331|p.L258P|1|0.08|ENSG00000130844|chr19:53577333-53577333|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7586059570312 2 622.372738 1242.73092 NaN NaN NaN NaN NaN NaN NaN 93.988 1 90.144 89.644 90.644 -3.844 0 0 0 2.8426 1 18026 18026 0.043787 0.042406 1 + 41505 25575 27561 27578 40938 40938 0.11926698402407965 SHIVKIEKLNE 11 Unmodified _SHIVKIEKLNE_ 0 0 0 ENSG00000132874|ENST00000255226|SLC14A2 ENSG00000132874|ENST00000255226|SLC14A2 ENSG00000132874|ENST00000255226|SLC14A2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2165832519531 3 437.253993 1308.74015 NaN NaN NaN NaN NaN NaN NaN 100.67 1 96.682 96.182 97.182 -3.9895 0 0 0 0.23528 1 19343 19343 4.1166 0.52957 1 41506 3769 27562 27579 40939 40939 0.0981300217745229 SHKKPSFM 8 Unmodified _SHKKPSFM_ 0 0 0 REV__nc|ENSG00000125485|Q9H8H2-2|DDX31 REV__nc|ENSG00000125485|Q9H8H2-2|DDX31 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2493591308594 2 481.249837 960.485122 NaN NaN NaN NaN NaN NaN NaN 132.03 1 127.18 126.68 127.68 -4.8527 0 0 0 0.23107 1 25359 25359 0.25148 0 1 + 41507 24024 27563 27580 40940 40940 0.003298622282159158 SHLCPDSI 8 Unmodified _SHLCPDSI_ 0 0 0 REV__OR4K14|p.V47A|1|0.2|ENSG00000169484|chr14:20015054-20015054|A/G|missense_variant REV__OR4K14|p.V47A|1|0.2|ENSG00000169484|chr14:20015054-20015054|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2356872558594 2 436.202553 870.390553 0.10154 4.429E-05 1.1065 0.00048264 1.208 0.00052693 436.2029736566898 96.329 0.96938 96.329 95.906 96.875 0 64 27 3 0 0 0 0.73426 1 18875 18875 9.3474 0 1 6851900 + 41508 18105 27564 27581 40941 40941 -0.04982696313777524 SHLGNNCDP 9 Unmodified _SHLGNNCDP_ 0 0 0 LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2;LAMA2|p.V2281Cfs*12|1|0.36|ENSG00000196569|chr6:129456464-129456465|-/T|frameshift_variant;LAMA2|p.A2665Cfs*4|1|0.15|ENSG00000196569|chr6:129491988-129491989|-/G|frameshift_variant;LAMA2|p.N1765Mfs*26|1|0.4|ENSG00000196569|chr6:129393101-129393101|A/-|frameshift_variant;LAMA2|p.K1124Nfs*15|2|0.34|ENSG00000196569|chr6:129313053-129313053|A/-|frameshift_variant LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73760986328125 2 478.698166 955.381779 0.080713 3.8637E-05 0.065331 3.1274E-05 0.14604 6.9911E-05 478.6980439017894 59.457 1.0225 56.143 55.742 56.764 -3.3139 45 28 2 0 0 0 0.81703 1 11148 11148 10.074 0 1 2631500 41509 7283 27565 27582 40942 40942 -0.09769669950276239 SHLNNKSC 8 Unmodified _SHLNNKSC_ 0 0 0 nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6;ENST00000560524.1_1_15:29526351-29527221:-|nuORF nc|ENSG00000143164|Q58WW2|DCAF6 nc|ENSG00000143164|Q58WW2|DCAF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 451.25311279296875 2 451.711076 901.4076 -0.2222 -0.00010037 0.7591 0.00034289 0.5369 0.00024252 451.71155128413557 70.763 1.6198 67.514 66.442 68.062 -3.2492 68 45 2 0 0 0 1.0231 1 13715 13715 7.9102 2.1497 1 1275900 41510 4460 27566 27583 40943 40943 -0.04704775707978115 SHNKIEVLPSH 11 Unmodified _SHNKIEVLPSH_ 0 0 0 ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7601928710938 2 630.838394 1259.66223 NaN NaN NaN NaN NaN NaN NaN 53.778 1 53.778 53.278 54.278 0 0 0 0 0.22632 1 10246 10246 0.026206 0 1 41511 6148 27567 27584 40944 40944 0.04278989312047088 SHNSSTAARL 10 Unmodified _SHNSSTAARL_ 0 0 0 REV__ENSG00000182263|ENST00000333129|FIGN REV__ENSG00000182263|ENST00000333129|FIGN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2645263671875 2 522.265062 1042.51557 NaN NaN NaN NaN NaN NaN NaN 147.35 1 142.19 141.69 142.69 -5.1557 0 0 0 0.22588 1 28512 28512 5.2969 0.066215 1 + 41512 18771 27568 27585 40945 40945 -0.0039868785306680365 SHPAPCVRL 9 Unmodified _SHPAPCVRL_ 0 0 0 REV__ENST00000521256.1_1_14:101323961-101327112:+|nuORF REV__ENST00000521256.1_1_14:101323961-101327112:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2598876953125 2 490.260736 978.50692 NaN NaN NaN NaN NaN NaN NaN 162.1 1 162.1 161.6 162.6 0 0 0 0 0.19684 1 32569 32569 0.073264 0 1 + 41513 22644 27569 27586 40946 40946 0.016806669767674975 SHPGNMGW 8 Unmodified _SHPGNMGW_ 0 0 0 ENST00000563678.1_1_16:31714490-31715590:+|nuORF;nc|ENSG00000131797|Q96NS8|CLUHP3;ENST00000525610.5_1_16:31712043-31716741:+|nuORF ENST00000563678.1_1_16:31714490-31715590:+|nuORF ENST00000563678.1_1_16:31714490-31715590:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 885.4072265625 1 885.367198 884.359921 0.53378 0.0004726 0.42883 0.00037967 0.96261 0.00085227 885.3672122919863 176.12 1.5673 171.33 170.47 172.03 -4.7898 89 43 3 0 0 0 0.77935 2 35965 35965;36034 5.2307 0 1 4890400 41514 10899 27570 27587 40947;40948 40947 -0.08688429908170292 SHPIQIVFH 9 Unmodified _SHPIQIVFH_ 0 0 0 REV__ENSG00000102313|ENST00000218436|ITIH6 REV__ENSG00000102313|ENST00000218436|ITIH6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2051086425781 3 359.866181 1076.57671 NaN NaN NaN NaN NaN NaN NaN 52.333 1 49.245 48.745 49.745 -3.0876 0 0 0 0.23508 1 9624 9624 7.609 0.97858 1 + 41515 14835 27571 27588 40949 40949 0.04148868917036452 SHPLDFDFT 9 Unmodified _SHPLDFDFT_ 0 0 0 ENST00000293826.4_1_17:7464239-7464377:+|nuORF ENST00000293826.4_1_17:7464239-7464377:+|nuORF ENST00000293826.4_1_17:7464239-7464377:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2048034667969 3 360.166185 1077.47673 NaN NaN NaN NaN NaN NaN NaN 50.511 1 47.466 46.966 47.966 -3.0453 0 0 0 0.20699 1 9257 9257 21.537 6.2885 1 41516 8486 27572 27589 40950 40950 -0.058914132074278314 SHPWLAAIY 9 Unmodified _SHPWLAAIY_ 0 0 0 CON__ENSEMBL:ENSBTAP00000023055;ENSG00000109758|ENST00000382774|HGFAC CON__ENSEMBL:ENSBTAP00000023055 CON__ENSEMBL:ENSBTAP00000023055 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 353.1858215332031 3 353.187032 1056.53927 NaN NaN NaN NaN NaN NaN NaN 65.941 1 65.941 65.441 66.441 0 0 0 0 0.23508 1 12727 12727 2.7352 0.45242 1 + 41517 642 27573 27590 40951 40951 0.013257776514137731 SHRLLAVD 8 Unmodified _SHRLLAVD_ 0 0 0 REV__ENSG00000100605|ENST00000267615|ITPK1 REV__ENSG00000100605|ENST00000267615|ITPK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.1236572265625 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 156.05 1 150.8 150.3 151.3 -5.2526 0 0 0 0.21486 1 30263 30263 1.4819 0 1 + 41518 14727 27574 27591 40952 40952 0.04484320474557535 SHRNVIMW 8 Unmodified _SHRNVIMW_ 0 0 0 ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;ENST00000495718.5_1_1:59787394-60091722:+|nuORF ENSG00000172456|ENST00000303721|FGGY ENSG00000172456|ENST00000303721|FGGY MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.277099609375 2 521.766186 1041.51782 -1.5386 -0.00080277 0.12827 6.6929E-05 -1.4103 -0.00073584 521.7663293806626 15.443 3.2314 14.09 13.507 16.739 -1.3534 185 92 4 0 0 0 8448 1 2483 2483 0.62683 0.50396 1 13595000 41519 6222 27575 27592 40953 40953 -0.0012793064895504358 SHRPQLDLL 9 Unmodified _SHRPQLDLL_ 0 0 0 REV__ENST00000430308.1_1_13:22105114-22105396:+|nuORF REV__ENST00000430308.1_1_13:22105114-22105396:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2119140625 3 360.204974 1077.59309 -0.34224 -0.00012328 0.15485 5.5778E-05 -0.18739 -6.7497E-05 360.20502106742214 18.943 0.3212 17.618 17.469 17.79 -1.3251 14 8 3 0 0 0 0.81492 1 2895 2895 1.0715 0.10919 1 907890 + 41520 21606 27576 27593 40954 40954 0.0573995008314796 SHRRIYGH 8 Unmodified _SHRRIYGH_ 0 0 0 REV__ENST00000540797.5_1_15:63862769-63866295:+|nuORF REV__ENST00000540797.5_1_15:63862769-63866295:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.0169372558594 3 342.517775 1024.5315 -0.23722 -8.1252E-05 -0.95219 -0.00032614 -1.1894 -0.00040739 342.5174645769342 32.473 0.35105 30.325 30.171 30.522 -2.1483 12 9 2 0 0 0 1.0265 1 5610 5610 0.40072 0.40072 1 398720 + 41521 22863 27577 27594 40955 40955 0.020210631745158025 SHRSDRRKEE 10 Unmodified _SHRSDRRKEE_ 0 0 0 REV__IQCH|p.G38Rfs*10|1|0.26|ENSG00000103599|chr15:67261326-67261327|-/A|frameshift_variant REV__IQCH|p.G38Rfs*10|1|0.26|ENSG00000103599|chr15:67261326-67261327|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 433.8883361816406 3 433.888596 1298.64396 NaN NaN NaN NaN NaN NaN NaN 17.418 1 17.418 16.918 17.918 0 0 0 0 0.22588 1 2760 2760 0.69767 0 1 + 41522 23669 27578 27595 40956 40956 0.006582473900380137 SHSDDRWFDP 10 Unmodified _SHSDDRWFDP_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76513671875 2 631.265259 1260.51596 0.86345 0.00054506 0.092273 5.8249E-05 0.95572 0.00060331 631.2660112529135 69.332 0.2142 66.153 65.974 66.188 -3.1796 12 5 3 0 0 0 0.88533 1 13459 13459 2.7352 0 1 3708400 41523 2339 27579 27596 40957 40957 -0.1038731292387638 SHSFSSPEGL 10 Unmodified _SHSFSSPEGL_ 0 0 0 REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.676513671875 2 524.240721 1046.46689 -0.26825 -0.00014063 0.20779 0.00010893 -0.06046 -3.1696E-05 524.2407622864774 70.292 0.56465 67.042 66.72 67.285 -3.2492 38 15 3 0 0 0 0.82094 1 13669 13669 10.824 2.9138 1 5212000 + 41524 22295 27580 27597 40958 40958 -0.05448601212788162 SHSFSSPEGL 10 Unmodified _SHSFSSPEGL_ 0 0 0 REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.700927734375 2 524.240721 1046.46689 -0.11766 -6.168E-05 0.33957 0.00017802 0.22191 0.00011634 524.2408325686989 70.613 0.565 67.033 66.768 67.333 -3.5798 38 15 3 0 0 0 0.82094 1 13266 13266 10.824 5.0921 1 3840000 + 41525 22295 27580 27597 40959 40959 -0.05448601212788162 SHSFSSPEGL 10 Unmodified _SHSFSSPEGL_ 0 0 0 REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6980590820312 2 524.240721 1046.46689 0.39917 0.00020926 -0.4795 -0.00025138 -0.08033 -4.2112E-05 524.2404168095371 70.566 0.56648 67.099 66.777 67.343 -3.467 41 15 3 0 0 0 0.86261 1 13338 13338 10.824 2.9138 1 5455800 + 41526 22295 27580 27597 40960 40960 -0.05448601212788162 SHSGDNSSEQ 10 Unmodified _SHSGDNSSEQ_ 0 0 0 MEIS1|p.T237M|1|0.7|ENSG00000143995|chr2:66464188-66464188|C/T|missense_variant;ENST00000606455.5_1_2:66670102-66794607:+|nuORF;MEIS1|p.S259Afs*24|1|0.2|ENSG00000143995|chr2:66512176-66512176|C/-|frameshift_variant;ENSG00000143995|ENST00000272369|MEIS1;nc|ENSG00000143995|O00470-2|MEIS1 MEIS1|p.T237M|1|0.7|ENSG00000143995|chr2:66464188-66464188|C/T|missense_variant MEIS1|p.T237M|1|0.7|ENSG00000143995|chr2:66464188-66464188|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.697021484375 2 524.202324 1046.39009 -0.036561 -1.9165E-05 -0.52389 -0.00027463 -0.56045 -0.00029379 524.2017460282985 70.133 0.84636 70.133 69.814 70.66 0 30 23 2 0 0 0 0.90091 1 13632 13632 3.2813 2.8806 1 1645400 41527 4536 27581 27598 40961 40961 -0.13124444499931087 SHSKTMGPA 9 Unmodified _SHSKTMGPA_ 0 0 0 REV__ENST00000468700.1_1_3:23996209-24001320:+|nuORF REV__ENST00000468700.1_1_3:23996209-24001320:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22296142578125 2 458.221277 914.428001 NaN NaN NaN NaN NaN NaN NaN 95.712 1 91.52 91.02 92.02 -4.1911 0 0 0 0.23508 1 18269 18269 10.824 0.75 1 + 41528 18428 27582 27599 40962 40962 -0.03263605048164209 SHSPQTAQHV 10 Unmodified _SHSPQTAQHV_ 0 0 0 ENSG00000267909|ENST00000599174|CCDC177 ENSG00000267909|ENST00000599174|CCDC177 ENSG00000267909|ENST00000599174|CCDC177 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.768798828125 2 546.265062 1090.51557 0.021265 1.1616E-05 0.32007 0.00017484 0.34134 0.00018646 546.2651935108572 52.012 0.79031 49.13 48.697 49.487 -2.8824 58 22 4 0 0 0 0.73527 1 9850 9850 7.609 1.4032 1 13685000 41529 7991 27583 27600 40963 40963 -0.026066878530400572 SHSPQTAQHV 10 Unmodified _SHSPQTAQHV_ 0 0 0 ENSG00000267909|ENST00000599174|CCDC177 ENSG00000267909|ENST00000599174|CCDC177 ENSG00000267909|ENST00000599174|CCDC177 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7682495117188 2 546.265062 1090.51557 0.070111 3.8299E-05 0.4996 0.00027291 0.56971 0.00031121 546.2651782796474 52.221 0.87646 49.133 48.777 49.654 -3.0876 63 24 4 0 0 0 0.68961 1 9601 9601 12.241 0 1 14205000 41530 7991 27583 27600 40964 40964 -0.026066878530400572 SHSPSRSY 8 Unmodified _SHSPSRSY_ 0 0 0 REV__nc|ENSG00000138448|P06756-3|ITGAV REV__nc|ENSG00000138448|P06756-3|ITGAV MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2476501464844 2 460.714673 919.414794 NaN NaN NaN NaN NaN NaN NaN 137.83 1 132.99 132.49 133.49 -4.84 0 0 0 0.21486 1 26559 26559 8.5933 2.8329 1 + 41531 16464 27584 27601 40965 40965 -0.048137198358972455 SHSQARYAQ 9 Unmodified _SHSQARYAQ_ 0 0 0 REV__ENSG00000119431|ENST00000374180|HDHD3 REV__ENSG00000119431|ENST00000374180|HDHD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.684326171875 2 524.251954 1046.48936 0.40244 0.00021098 0.90471 0.00047429 1.3071 0.00068528 524.2529764394252 70.903 0.67131 67.435 67.06 67.731 -3.467 41 18 3 0 0 0 0.79204 1 13422 13422 11.64 0.81637 1 4224900 + 41532 15579 27585 27602 40966 40966 -0.0320295702454132 SHSQMFIDP 9 Unmodified _SHSQMFIDP_ 0 0 0 REV__SSH2|p.K799Nfs*18|1|0.32|ENSG00000141298|chr17:29632716-29632716|T/-|frameshift_variant REV__SSH2|p.K799Nfs*18|1|0.32|ENSG00000141298|chr17:29632716-29632716|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 354.20904541015625 3 354.495537 1060.46478 -0.45677 -0.00016192 1.601 0.00056755 1.1442 0.00040563 354.4959186645574 17.172 0.13941 15.899 15.835 15.974 -1.2722 5 3 2 0 0 0 0.88425 1 2506 2506 0 0 1 130750 + 41533 16619 27586 27603 40967 40967 -0.06303353222256192 SHSRGHYGF 9 Unmodified _SHSRGHYGF_ 0 0 0 ENST00000298159.10_1_14:35182744-35183798:-|nuORF ENST00000298159.10_1_14:35182744-35183798:-|nuORF ENST00000298159.10_1_14:35182744-35183798:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.679443359375 2 524.24139 1046.46823 -0.15243 -7.991E-05 -1.0795 -0.00056592 -1.2319 -0.00064583 524.240796044942 67.074 0.56786 67.074 66.8 67.368 0 41 15 3 0 0 0 0.80521 1 12962 12962 10.824 0 1 6916400 41534 8524 27587 27604 40968 40968 -0.05314922333377581 SHSSCDMSDL 10 Unmodified _SHSSCDMSDL_ 0 0 0 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.278076171875 2 541.199881 1080.38521 0.23302 0.00012611 -3.2482 -0.0017579 -3.0152 -0.0016318 541.1981660629649 64.793 0.54832 61.746 61.456 62.004 -3.047 18 15 2 0 0 0 0.87854 1 12491 12491 9.3831 0 1 820810 + 41535 17988 27588 27605 40969 40969 -0.15176787958580462 SHSSGPELSF 10 Unmodified _SHSSGPELSF_ 0 0 0 nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1 nc|ENSG00000005379|O95153-2|TSPOAP1 nc|ENSG00000005379|O95153-2|TSPOAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.689453125 2 524.240721 1046.46689 -0.15226 -7.9823E-05 -0.62949 -0.00033001 -0.78176 -0.00040983 524.2404727856101 66.513 0.66267 66.513 66.172 66.834 0 68 18 5 0 0 0 0.66352 1 12826 12826 19.257 5.3509 1 18473000 41536 989 27589 27606 40970 40970 -0.054486012128108996 SHSSGPELSF 10 Unmodified _SHSSGPELSF_ 0 0 0 nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1 nc|ENSG00000005379|O95153-2|TSPOAP1 nc|ENSG00000005379|O95153-2|TSPOAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.701171875 2 524.240721 1046.46689 -0.249 -0.00013054 -0.3982 -0.00020875 -0.6472 -0.00033929 524.2406124732888 69.592 0.77913 66.412 66.046 66.825 -3.1796 80 21 6 0 0 0 0.25367 1 13553 13553 37.974 12.575 1 22502000 41537 989 27589 27606 40971 40971 -0.054486012128108996 SHSSGPELSF 10 Unmodified _SHSSGPELSF_ 0 0 0 nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1 nc|ENSG00000005379|O95153-2|TSPOAP1 nc|ENSG00000005379|O95153-2|TSPOAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7017211914062 2 524.240721 1046.46689 -0.081551 -4.2752E-05 -0.41253 -0.00021627 -0.49408 -0.00025902 524.2406277597647 70.03 1.0158 66.45 66.106 67.122 -3.5798 94 28 7 0 0 0 0.25367 1 13180 13180 30.637 5.2372 1 19686000 41538 989 27589 27606 40972 40972 -0.054486012128108996 SHSSGPELSF 10 Unmodified _SHSSGPELSF_ 0 0 0 nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1 nc|ENSG00000005379|O95153-2|TSPOAP1 nc|ENSG00000005379|O95153-2|TSPOAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6774291992188 2 524.240721 1046.46689 0.39417 0.00020664 -0.8721 -0.00045719 -0.47793 -0.00025055 524.2402867306954 69.935 0.83812 66.468 66.044 66.882 -3.467 89 23 6 0 0 0 0.37929 1 13264 13264 24.021 4.7636 1 21797000 41539 989 27589 27606 40973 40973 -0.054486012128108996 SHTGTSASAP 10 Unmodified _SHTGTSASAP_ 0 0 0 FURIN|p.C644Afs*13|1|0.32|ENSG00000140564|chr15:90881418-90881418|C/-|frameshift_variant;ENSG00000140564|ENST00000268171|FURIN FURIN|p.C644Afs*13|1|0.32|ENSG00000140564|chr15:90881418-90881418|C/-|frameshift_variant FURIN|p.C644Afs*13|1|0.32|ENSG00000140564|chr15:90881418-90881418|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.233154296875 2 458.211963 914.409374 NaN NaN NaN NaN NaN NaN NaN 26.965 1 26.965 26.465 27.465 0 0 0 0 0.10125 1 4740 4740 45.7 0 1 41540 4314 27590 27607 40974 40974 -0.051254434183874764 SHTGTSASAP 10 Unmodified _SHTGTSASAP_ 0 0 0 FURIN|p.C644Afs*13|1|0.32|ENSG00000140564|chr15:90881418-90881418|C/-|frameshift_variant;ENSG00000140564|ENST00000268171|FURIN FURIN|p.C644Afs*13|1|0.32|ENSG00000140564|chr15:90881418-90881418|C/-|frameshift_variant FURIN|p.C644Afs*13|1|0.32|ENSG00000140564|chr15:90881418-90881418|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2286071777344 2 458.211963 914.409374 NaN NaN NaN NaN NaN NaN NaN 28.994 1 26.997 26.497 27.497 -1.9962 0 0 0 0.12865 1 4913 4913 39.95 11.463 1 41541 4314 27590 27607 40975 40975 -0.051254434183874764 SHTHCLWQM 9 Unmodified _SHTHCLWQM_ 0 0 0 ENSG00000163263|ENST00000368525|CFAP141 ENSG00000163263|ENST00000368525|CFAP141 ENSG00000163263|ENST00000368525|CFAP141 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2066955566406 3 381.500516 1141.47972 -0.26731 -0.00010198 -0.51862 -0.00019785 -0.78592 -0.00029983 381.5002465868933 28.868 0.58916 26.872 26.694 27.283 -1.9962 23 16 2 0 0 0 0.87609 1 4859 4859 7.609 1.4171 1 513600 41542 5413 27591 27608 40976 40976 -0.0853618462592749 SHTIEFFEM 9 Unmodified _SHTIEFFEM_ 0 0 0 ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1 ENSG00000132356|ENST00000397128|PRKAA1 ENSG00000132356|ENST00000397128|PRKAA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2121276855469 3 380.839192 1139.49575 NaN NaN NaN NaN NaN NaN NaN 28.73 1 28.73 28.23 29.23 0 0 0 0 0.19624 1 5112 5112 0 0 1 41543 3719 27592 27609 40977 40977 -0.06842199908010116 SHTRENHY 8 Unmodified _SHTRENHY_ 0 0 0 tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1 tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1 tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2762451171875 2 522.236304 1042.45806 NaN NaN NaN NaN NaN NaN NaN 100.52 1 96.222 95.722 96.722 -4.297 0 0 0 0.2074 1 19228 19228 19.439 0 1 41544 26015 27593 27610 40978 40978 -0.061475300586153026 SHTVASTF 8 Unmodified _SHTVASTF_ 0 0 0 REV__ENSG00000188000|ENST00000641288|OR7D2 REV__ENSG00000188000|ENST00000641288|OR7D2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2545166015625 2 425.208692 848.402832 0.075478 3.2094E-05 0.31017 0.00013189 0.38564 0.00016398 425.2086936255603 70.584 0.81473 67.117 66.777 67.592 -3.467 45 22 3 0 0 0 1.0191 1 13364 13364 8.5933 0 1 2176800 + 41545 19124 27594 27611 40979 40979 -0.02743336579089828 SHWGHGLY 8 Unmodified _SHWGHGLY_ 0 0 0 REV__ENST00000487134.5_1_19:54927741-54947306:+|nuORF REV__ENST00000487134.5_1_19:54927741-54947306:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72186279296875 2 478.722301 955.43005 -0.16492 -7.8951E-05 0.20819 9.9663E-05 0.043265 2.0712E-05 478.72225344692555 95.819 1.2128 95.819 95.35 96.563 0 64 34 2 0 0 0 0.6199 1 18753 18753 20.871 20.871 1 3786400 + 41546 22251 27595 27612 40980 40980 -0.049448082480580524 SIAESFRAV 9 Unmodified _SIAESFRAV_ 0 0 0 REV__tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1 REV__tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2557373046875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 47.324 1 44.374 43.874 44.874 -2.9499 0 0 0 0.14843 1 8636 8636 30.637 2.1497 1 + 41547 24862 27596 27613 40981 40981 0.02332883409144415 SIAGAMGG 8 Unmodified _SIAGAMGG_ 0 0 0 REV__ENSG00000145832|ENST00000681962|SLC25A48 REV__ENSG00000145832|ENST00000681962|SLC25A48 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.0058288574219 2 332.160157 662.30576 NaN NaN NaN NaN NaN NaN NaN 137.77 1 133.12 132.62 133.62 -4.6413 0 0 0 0.21486 1 27194 27194 5.2307 0 1 + 41548 16856 27597 27614 40982 40982 -0.03890022059727016 SIAGEWLRL 9 Unmodified _SIAGEWLRL_ 0 0 0 REV__ENSG00000106785|ENST00000341469|TRIM14 REV__ENSG00000106785|ENST00000341469|TRIM14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2808837890625 2 522.795466 1043.57638 0.41393 0.0002164 -0.2857 -0.00014936 0.12823 6.7038E-05 522.7952636395382 120.53 0.73998 116.06 115.68 116.42 -4.467 50 20 3 0 0 0 0.47479 1 23156 23156 18.146 2.2992 1 5689800 + 41549 15064 27598 27615 40983 40983 0.056334491971938405 SIALWVVFF 9 Unmodified _SIALWVVFF_ 0 0 0 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2609252929688 2 541.307678 1080.6008 0.41297 0.00022354 -2.7233 -0.0014741 -2.3103 -0.0012506 541.3060449486125 163.94 0.27171 159.15 159.09 159.37 -4.7898 10 7 2 0 0 0 0.79204 1 32725 32725 11.64 5.4345 1 9054800 41550 3314 27599 27616 40984 40984 0.06372709350716832 SIAVRGKKC 9 Unmodified _SIAVRGKKC_ 0 0 0 REV__DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant REV__DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24761962890625 2 481.284211 960.55387 NaN NaN NaN NaN NaN NaN NaN 161.4 1 156.61 156.11 157.11 -4.7952 0 0 0 0.23508 1 32098 32098 13.042 1.4022 1 + 41551 13660 27600 27617 40985 40985 0.07201526527921942 SIAVSVSSV 9 Unmodified _SIAVSVSSV_ 0 0 0 REV__SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant REV__SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.241455078125 2 424.739825 847.465098 -0.15695 -6.6663E-05 0.30078 0.00012775 0.14383 6.109E-05 424.7399133457692 133.94 0.8083 129.3 128.82 129.63 -4.6399 49 22 3 0 0 0 0.042631 1 26379 26379 74.423 0 1 11012000 + 41552 24740 27601 27618 40986 40986 0.035263897692516366 SIAWEKSV 8 Unmodified _SIAWEKSV_ 0 0 0 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2481994628906 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 21.545 1 20.071 19.571 20.571 -1.4742 0 0 0 0.1328 1 3649 3649 39.957 3.8303 1 41553 1535 27602 27619 40987 40987 0.018580960061512997 SICFLINEPQP 11 Unmodified _SICFLINEPQP_ 0 0 0 REV__CHAT|p.T688N|1|0.31|ENSG00000070748|chr10:49664862-49664862|C/A|missense_variant REV__CHAT|p.T688N|1|0.31|ENSG00000070748|chr10:49664862-49664862|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.759033203125 2 630.818281 1259.62201 NaN NaN NaN NaN NaN NaN NaN 141.66 1 136.79 136.29 137.29 -4.8678 0 0 0 0.23087 1 27335 27335 7.609 0.88579 1 + 41554 13396 27603 27620 40988 40988 0.002583065972658005 SICHSLKHR 9 Unmodified _SICHSLKHR_ 0 0 0 REV__IL26|p.Q116H|1|0.29|ENSG00000111536|chr12:68225164-68225164|C/A|missense_variant REV__IL26|p.Q116H|1|0.29|ENSG00000111536|chr12:68225164-68225164|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2833862304688 2 540.790192 1079.56583 0.24743 0.00013381 -0.17676 -9.559E-05 0.070674 3.822E-05 541.2915433811755 129.45 0.67325 124.71 124.33 125 -4.7408 26 18 2 0 0 0 0.55979 1 24959 24959 15.847 0 1 1622900 + 41555 23655 27604 27621 40989 40989 0.02923143271095796 SICQPQHEACE 11 Unmodified _SICQPQHEACE_ 0 0 0 ENST00000542077.5_1_1:212276648-212276690:+|nuORF ENST00000542077.5_1_1:212276648-212276690:+|nuORF ENST00000542077.5_1_1:212276648-212276690:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7533569335938 2 622.755355 1243.49616 NaN NaN NaN NaN NaN NaN NaN 155.34 1 155.34 154.84 155.84 0 0 0 0 0.23087 1 31141 31141 7.609 0.88579 1 41556 11085 27605 27622 40990 40990 -0.11585148250492239 SICQQTWDV 9 Unmodified _SICQQTWDV_ 0 0 0 REV__ENSG00000174718|ENST00000312561|RESF1 REV__ENSG00000174718|ENST00000312561|RESF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2048034667969 3 360.499058 1078.47534 0.041595 1.4995E-05 0.91762 0.0003308 0.95922 0.0003458 360.499328264382 50.556 0.44502 47.511 47.29 47.735 -3.0453 13 12 2 0 0 0 0.84849 1 9257 9257 12.873 1.3779 1 697110 + 41557 18426 27606 27623 40991 40991 -0.060753705678507686 SICRHHCLL 9 Unmodified _SICRHHCLL_ 0 0 0 ADGRG4|p.R1598Qfs*86|1|0.06|ENSG00000156920|chrX:136348492-136348493|-/C|frameshift_variant ADGRG4|p.R1598Qfs*86|1|0.06|ENSG00000156920|chrX:136348492-136348493|-/C|frameshift_variant ADGRG4|p.R1598Qfs*86|1|0.06|ENSG00000156920|chrX:136348492-136348493|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2749633789062 2 541.273321 1080.53209 NaN NaN NaN NaN NaN NaN NaN 158.04 1 152.77 152.27 153.27 -5.2712 0 0 0 0.22251 1 30661 30661 16.942 1.0951 1 41558 80 27607 27624 40992 40992 -0.004956014923209295 SICRRPST 8 Unmodified _SICRRPST_ 0 0 0 ENST00000477592.2_1_6:3723202-3723334:-|nuORF ENST00000477592.2_1_6:3723202-3723334:-|nuORF ENST00000477592.2_1_6:3723202-3723334:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2440185546875 2 460.242544 918.470534 NaN NaN NaN NaN NaN NaN NaN 94.313 1 90.322 89.822 90.822 -3.9907 0 0 0 0.20618 1 18479 18479 20.454 1.0146 1 41559 10305 27608 27625 40993 40993 0.008037900800673015 SIDAEFYA 8 Unmodified _SIDAEFYA_ 0 0 0 REV__ENSG00000138375|ENST00000357276|SMARCAL1 REV__ENSG00000138375|ENST00000357276|SMARCAL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23876953125 2 458.208358 914.402163 -0.49903 -0.00022866 0.94861 0.00043466 0.44959 0.000206 458.2087402339897 106.85 0.76691 102.58 102.25 103.02 -4.2638 31 21 2 0 0 0 0.50973 1 20981 20981 32.117 0 1 1960400 + 41560 16454 27609 27626 40994 40994 -0.05846176018803817 SIDAGVFEVK 10 Unmodified _SIDAGVFEVK_ 0 0 0 HSPA6|p.G341Afs*21|1|0.29|ENSG00000173110|chr1:161525675-161525675|G/-|frameshift_variant;nc|ENSG00000225217|P48741|HSPA7;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;ENSG00000173110|ENST00000309758|HSPA6 HSPA6|p.G341Afs*21|1|0.29|ENSG00000173110|chr1:161525675-161525675|G/-|frameshift_variant HSPA6|p.G341Afs*21|1|0.29|ENSG00000173110|chr1:161525675-161525675|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2867431640625 2 532.784764 1063.55498 0.11692 6.2294E-05 0.1736 9.249E-05 0.29052 0.00015478 532.7848707753699 93.281 0.72835 89.437 89.123 89.851 -3.844 31 20 3 0 0 0 0.4708 1 17874 17874 26.268 0 1 1900800 41561 6265 27610 27627 40995 40995 0.025740193777892273 SIDATYAKQY 10 Unmodified _SIDATYAKQY_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.19110107421875 3 387.192511 1158.5557 NaN NaN NaN NaN NaN NaN NaN 68.507 1 68.507 68.007 69.007 0 0 0 0 0.22588 1 13248 13248 6.1918 2.3155 1 41562 2670 27611 27628 40996 40996 -0.017231859731282384 SIDENVEGP 9 Unmodified _SIDENVEGP_ 0 0 0 REV__ENSG00000170209|ENST00000303941|ANKK1 REV__ENSG00000170209|ENST00000303941|ANKK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2418212890625 2 480.219454 958.424355 0.20081 9.6435E-05 -2.3271 -0.0011175 -2.1263 -0.0010211 480.21854788111295 63.949 0.55912 60.533 60.286 60.846 -3.4158 30 15 3 0 0 0 0.60805 1 11907 11907 12.532 0.89125 1 1963200 + 41563 18146 27612 27629 40997 40997 -0.056519963410323726 SIDENVEGP 9 Unmodified _SIDENVEGP_ 0 0 0 REV__ENSG00000170209|ENST00000303941|ANKK1 REV__ENSG00000170209|ENST00000303941|ANKK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.219454 958.424355 0.078502 3.7698E-05 -0.4263 -0.00020472 -0.3478 -0.00016702 480.21866003700427 63.569 0.69678 60.572 60.285 60.982 -2.9975 0.019477 0.001325 NaN 12.532 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2798700 + 41564 18146 27612 27629 -0.056519963410323726 SIDFLFLDLRP 11 Unmodified _SIDFLFLDLRP_ 0 0 0 ENST00000561234.5_2_15:40758783-40758927:+|nuORF ENST00000561234.5_2_15:40758783-40758927:+|nuORF ENST00000561234.5_2_15:40758783-40758927:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 668.2393188476562 2 668.368995 1334.72344 0.70842 0.00047349 2.9559 0.0019756 3.6643 0.0024491 668.370677837622 164.66 0.1769 159.6 159.48 159.65 -5.0648 5 4 2 0 0 0 0.96036 1 32139 32139 2.4985 1.427 1 5555100 41565 11299 27613 27630 40998 40998 0.06946501291463392 SIDIKIYDK 9 Unmodified _SIDIKIYDK_ 0 0 0 REV__tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1 REV__tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7935180664062 2 547.808239 1093.60193 NaN NaN NaN NaN NaN NaN NaN 104.23 1 99.881 99.381 100.38 -4.346 0 0 0 0.23508 1 19966 19966 10.824 0.75 1 + 41566 25466 27614 27631 40999 40999 0.05886878928936312 SIDKAVQL 8 Unmodified _SIDKAVQL_ 0 0 0 nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF nc|ENSG00000072310|P36956-3|SREBF1 nc|ENSG00000072310|P36956-3|SREBF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2168884277344 2 437.255643 872.496732 -0.26619 -0.0001164 0.38862 0.00016993 0.12242 5.3531E-05 437.2557631120687 72.02 0.56554 68.709 68.388 68.954 -3.3107 33 15 3 0 0 0 0.037013 2 14008 14008;14052 92.653 3.6995 1 4234500 41567 1463 27615 27632 41000;41001 41000 0.05538382523195651 SIDLEALAS 9 Unmodified _SIDLEALAS_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2442626953125 2 459.742565 917.470577 0.12832 5.8996E-05 0.13763 6.3276E-05 0.26596 0.00012227 459.74255461188 118.1 0.97391 113.6 113.1 114.08 -4.502 76 27 4 0 0 0 0.095051 2 23210 23210;23353 57.471 9.1255 1 22845000 + 41568 13904 27616 27633 41002;41003 41002 0.008540685610455512 SIDLEALAS 9 Unmodified _SIDLEALAS_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2314453125 2 459.742565 917.470577 0.43051 0.00019792 -0.16776 -7.7127E-05 0.26274 0.00012079 459.7424273940338 118.14 0.96581 113.73 113.24 114.21 -4.4088 79 26 4 0 0 0 0.042631 2 22676 22676;22709 74.423 0 1 24466000 + 41569 13904 27616 27633 41004;41005 41004 0.008540685610455512 SIDLFHSPQ 9 Unmodified _SIDLFHSPQ_ 0 0 0 REV__ENSG00000170965|ENST00000359237|PLAC1 REV__ENSG00000170965|ENST00000359237|PLAC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2636108398438 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 142.35 1 137.45 136.95 137.95 -4.8982 0 0 0 0.1761 1 27465 27465 26.884 8.7487 1 + 41570 18193 27617 27634 41006 41006 -0.011194204534831442 SIDLKQVK 8 Unmodified _SIDLKQVK_ 0 0 0 REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24847412109375 2 465.784567 929.554582 -0.047647 -2.2193E-05 0.015652 7.2906E-06 -0.031995 -1.4903E-05 465.7845099419946 52.909 0.4833 49.813 49.586 50.069 -3.0954 24 13 2 0 0 0 0.80998 1 9807 9807 26.268 0 1 2330900 + 41571 16557 27618 27635 41007 41007 0.08698644448611503 SIDQGFTY 8 Unmodified _SIDQGFTY_ 0 0 0 REV__ENST00000523804.1_1_8:30651411-30651755:-|nuORF REV__ENST00000523804.1_1_8:30651411-30651755:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2589111328125 2 465.713808 929.413062 -0.12102 -5.636E-05 -0.081184 -3.7809E-05 -0.2022 -9.4168E-05 465.71366499863143 114.25 0.85059 109.77 109.58 110.43 -4.4726 43 23 2 0 0 0 0.74718 1 22523 22523 24.674 2.9272 1 1697800 + 41572 14934 27619 27636 41008 41008 -0.0544677364450763 SIDRDQID 8 Unmodified _SIDRDQID_ 0 0 0 REV__nc|ENSG00000164823|Q9Y236|OSGIN2 REV__nc|ENSG00000164823|Q9Y236|OSGIN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2405700683594 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 155.42 1 150.14 149.64 150.64 -5.2854 0 0 0 0.21486 1 30147 30147 8.5933 0 1 + 41573 17713 27620 27637 41009 41009 -0.030568877298492225 SIDSFVVLKD 10 Unmodified _SIDSFVVLKD_ 0 0 0 tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1 tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1 tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2172546386719 3 374.87289 1121.59684 -0.49587 -0.00018589 0.45601 0.00017095 -0.039855 -1.4941E-05 374.8730908244092 67.555 0.52719 67.555 67.262 67.79 0 26 14 2 0 0 0 0.75099 1 13080 13080 5.4027 0.87384 1 1552000 41574 26169 27621 27638 41010 41010 0.04090575066356905 SIDTLIFTLE 10 Unmodified _SIDTLIFTLE_ 0 0 0 nc|ENSG00000115239|Q9Y575-3|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-2|ASB3 nc|ENSG00000115239|Q9Y575-3|ASB3 nc|ENSG00000115239|Q9Y575-3|ASB3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3383178710938 2 576.313354 1150.61216 NaN NaN NaN NaN NaN NaN NaN 144.28 1 139.61 139.11 140.11 -4.6694 0 0 0 0.22583 1 28564 28564 13.906 3.1065 1 41575 2834 27622 27639 41011 41011 0.04287441863539243 SIDTQLKLY 9 Unmodified _SIDTQLKLY_ 0 0 0 REV__ENST00000495864.5_1_3:45877080-45883504:-|nuORF REV__ENST00000495864.5_1_3:45877080-45883504:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2733154296875 2 540.800414 1079.58628 0.36087 0.00019516 -0.53491 -0.00028928 -0.17404 -9.4119E-05 540.8001586009825 109.91 0.89272 109.91 109.47 110.37 0 40 25 2 0 0 0 0.48644 1 21546 21546 20.454 2.0805 1 4297800 + 41576 17618 27623 27640 41012 41012 0.04966592411892634 SIDVAGNLDY 10 Unmodified _SIDVAGNLDY_ 0 0 0 ENST00000503612.1_1_4:674719-675780:+|nuORF;nc|ENSG00000215375|Q02045-2|MYL5;ENST00000503300.5_1_4:672853-675780:+|nuORF;ENSG00000215375|ENST00000400159|MYL5 ENST00000503612.1_1_4:674719-675780:+|nuORF ENST00000503612.1_1_4:674719-675780:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.274169921875 2 533.756204 1065.49785 0.78666 0.00041988 -0.78452 -0.00041874 0.0021368 1.1405E-06 533.7557980702544 118 0.78736 113.39 112.99 113.78 -4.6106 27 21 2 0 0 0 0.37359 1 22643 22643 47.749 33.843 1 1342200 41577 7745 27624 27641 41013 41013 -0.03227447898552782 SIDVAGNLDY 10 Unmodified _SIDVAGNLDY_ 0 0 0 ENST00000503612.1_1_4:674719-675780:+|nuORF;nc|ENSG00000215375|Q02045-2|MYL5;ENST00000503300.5_1_4:672853-675780:+|nuORF;ENSG00000215375|ENST00000400159|MYL5 ENST00000503612.1_1_4:674719-675780:+|nuORF ENST00000503612.1_1_4:674719-675780:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2872314453125 2 533.756204 1065.49785 0.50025 0.00026701 -0.23758 -0.00012681 0.26268 0.00014021 533.7562299934385 117.85 0.426 113.44 113.14 113.57 -4.4088 18 11 2 0 0 0 0.84281 1 22635 22635 13.906 9.9617 1 1190900 41578 7745 27624 27641 41014 41014 -0.03227447898552782 SIDVEPAYTE 10 Unmodified _SIDVEPAYTE_ 0 0 0 ENST00000511160.5_2_4:20702308-20703492:+|nuORF ENST00000511160.5_2_4:20702308-20703492:+|nuORF ENST00000511160.5_2_4:20702308-20703492:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2048034667969 3 375.176638 1122.50808 -0.34096 -0.00012792 0.98984 0.00037137 0.64889 0.00024345 375.17682557276953 74.429 0.55803 70.835 70.641 71.199 -3.594 22 15 2 0 0 0 0.69026 1 14194 14194 12.175 3.1985 1 1419300 41579 10747 27625 27642 41015 41015 -0.048268849639725886 SIDVEPAYTE 10 Unmodified _SIDVEPAYTE_ 0 0 0 ENST00000511160.5_2_4:20702308-20703492:+|nuORF ENST00000511160.5_2_4:20702308-20703492:+|nuORF ENST00000511160.5_2_4:20702308-20703492:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.176638 1122.50808 0.17654 6.6235E-05 0.011788 4.4225E-06 0.18833 7.0658E-05 375.17651026870817 74.516 0.69472 70.839 70.623 71.318 -3.6764 0.00232 -0.00047444 NaN 12.175 23 19 2 NaN NaN NaN NaN 0 NaN NaN 0 972840 41580 10747 27625 27642 -0.048268849639725886 SIDVIKKIK 9 Unmodified _SIDVIKKIK_ 0 0 0 REV__tr|U7T6S1|U7T6S1_FUSNUNfeD-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00178PE=4SV=1 REV__tr|U7T6S1|U7T6S1_FUSNUNfeD-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00178PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2733764648438 2 522.344792 1042.67503 NaN NaN NaN NaN NaN NaN NaN 131.4 1 131.4 130.9 131.9 0 0 0 0 0.19649 1 25978 25978 0.029283 0 1 + 41581 25454 27626 27643 41016 41016 0.15540052442224805 SIECEACEY 9 Unmodified _SIECEACEY_ 0 0 0 REV__ENSG00000196453|ENST00000247930|ZNF777 REV__ENSG00000196453|ENST00000247930|ZNF777 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6884155273438 2 523.6939 1045.37325 NaN NaN NaN NaN NaN NaN NaN 107.98 1 107.98 107.48 108.48 0 0 0 0 0.23508 1 21233 21233 7.9102 3.1541 1 + 41582 19246 27627 27644 41017 41017 -0.14762404701764353 SIECEACEY 9 Unmodified _SIECEACEY_ 0 0 0 REV__ENSG00000196453|ENST00000247930|ZNF777 REV__ENSG00000196453|ENST00000247930|ZNF777 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7015991210938 2 523.6939 1045.37325 NaN NaN NaN NaN NaN NaN NaN 130.1 1 130.1 129.6 130.6 0 0 0 0 0.23508 1 25706 25706 4.756 0.42677 1 + 41583 19246 27627 27644 41018 41018 -0.14762404701764353 SIECEACEY 9 Unmodified _SIECEACEY_ 0 0 0 REV__ENSG00000196453|ENST00000247930|ZNF777 REV__ENSG00000196453|ENST00000247930|ZNF777 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.695556640625 2 523.6939 1045.37325 NaN NaN NaN NaN NaN NaN NaN 89.728 1 85.869 85.369 86.369 -3.8595 0 0 0 0.18274 1 17556 17556 0.87518 0.74736 1 + 41584 19246 27627 27644 41019 41019 -0.14762404701764353 SIECEACEY 9 Unmodified _SIECEACEY_ 0 0 0 REV__ENSG00000196453|ENST00000247930|ZNF777 REV__ENSG00000196453|ENST00000247930|ZNF777 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6962280273438 2 523.6939 1045.37325 NaN NaN NaN NaN NaN NaN NaN 133.48 1 128.6 128.1 129.1 -4.8726 0 0 0 0.19656 1 25645 25645 0.073264 0.064987 1 + 41585 19246 27627 27644 41020 41020 -0.14762404701764353 SIECEACEY 9 Unmodified _SIECEACEY_ 0 0 0 REV__ENSG00000196453|ENST00000247930|ZNF777 REV__ENSG00000196453|ENST00000247930|ZNF777 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6825561523438 2 523.6939 1045.37325 NaN NaN NaN NaN NaN NaN NaN 89.297 1 85.52 85.02 86.02 -3.7779 0 0 0 0.19691 1 17098 17098 0.073264 0.064987 1 + 41586 19246 27627 27644 41021 41021 -0.14762404701764353 SIECEACEY 9 Unmodified _SIECEACEY_ 0 0 0 REV__ENSG00000196453|ENST00000247930|ZNF777 REV__ENSG00000196453|ENST00000247930|ZNF777 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6924438476562 2 523.6939 1045.37325 NaN NaN NaN NaN NaN NaN NaN 89.329 1 85.551 85.051 86.051 -3.7779 0 0 0 0.19691 1 17103 17103 0.073264 0.043981 1 + 41587 19246 27627 27644 41022 41022 -0.14762404701764353 SIECESCRPR 10 Unmodified _SIECESCRPR_ 0 0 0 REV__tr|U7SZE4|U7SZE4_FUSNUEndonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nthPE=3SV=1 REV__tr|U7SZE4|U7SZE4_FUSNUEndonucleaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nthPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2662963867188 2 590.26589 1178.51723 NaN NaN NaN NaN NaN NaN NaN 91.535 1 87.726 87.226 88.226 -3.8083 0 0 0 0.22588 1 17525 17525 10.074 2.1638 1 + 41588 25243 27628 27645 41023 41023 -0.06489138150959661 SIEGGKGAPI 10 Unmodified _SIEGGKGAPI_ 0 0 0 REV__ENST00000372628.5_1_X:102863555-102864059:+|nuORF REV__ENST00000372628.5_1_X:102863555-102864059:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25927734375 2 464.758549 927.502546 0.10934 5.0817E-05 0.17037 7.918E-05 0.27971 0.00013 464.7585750446811 128.33 0.5695 123.51 123.2 123.77 -4.817 29 15 3 0 0 0 0.37773 1 24589 24589 32.305 1.6689 1 1757100 + 41589 21029 27629 27646 41024 41024 0.03589481034839537 SIEGQSNVVL 10 Unmodified _SIEGQSNVVL_ 0 0 0 REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6765747070312 2 523.279846 1044.54514 -0.26059 -0.00013636 0.34188 0.0001789 0.081289 4.2537E-05 523.2800443484203 90.219 0.64426 86.359 85.938 86.582 -3.8595 33 17 2 0 0 0 0.79872 1 17574 17574 19.257 1.1106 1 2335800 + 41590 13202 27630 27647 41025 41025 0.02464831372435583 SIEGTAKTI 9 Unmodified _SIEGTAKTI_ 0 0 0 tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2490539550781 2 460.258382 918.502212 0.43242 0.00019903 -0.44571 -0.00020514 -0.013284 -6.1141E-06 460.2581260971568 42.208 0.5947 42.208 41.897 42.491 0 41 16 3 0 0 0 0.52027 1 7885 7885 25.399 9.5521 1 1491900 41591 26492 27631 27648 41026 41026 0.03970061315010298 SIEGTAKTI 9 Unmodified _SIEGTAKTI_ 0 0 0 tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2485656738281 2 460.258382 918.502212 -0.10655 -4.9041E-05 0.034597 1.5923E-05 -0.071955 -3.3118E-05 460.25831070723876 44.936 1.2962 42.188 41.255 42.551 -2.7475 59 36 3 0 0 0 0.52027 1 8107 8107 25.399 9.5521 1 2123900 41592 26492 27631 27648 41027 41027 0.03970061315010298 SIEGTAKTI 9 Unmodified _SIEGTAKTI_ 0 0 0 tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 460.258382 918.502212 -0.10655 -4.9041E-05 0.034597 1.5923E-05 -0.071955 -3.3118E-05 460.25831070723876 44.936 1.2962 42.188 41.255 42.551 -2.7475 0.040699 9.5515E-05 NaN 25.399 59 36 3 NaN NaN NaN NaN 0 NaN NaN 0 2123900 41593 26492 27631 27648 0.03970061315010298 SIEGVSHLD 9 Unmodified _SIEGVSHLD_ 0 0 0 REV__PKDREJ|p.H1268Qfs*19|1|0.09|ENSG00000130943|chr22:46259519-46259520|-/AAATC|frameshift_variant REV__PKDREJ|p.H1268Qfs*19|1|0.09|ENSG00000130943|chr22:46259519-46259520|-/AAATC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7278137207031 2 478.737814 955.461075 0.051633 2.4719E-05 1.6501 0.00078995 1.7017 0.00081467 478.738578329826 128.9 0.6694 124.27 123.76 124.43 -4.6292 28 18 2 0 0 0 0.35443 1 25315 25315 28.487 2.1456 1 1673500 + 41594 16040 27632 27649 41028 41028 -0.018436997244748454 SIEKEKDYL 9 Unmodified _SIEKEKDYL_ 0 0 0 SYNE2|p.S2573Y|1|0.11|ENSG00000054654|chr14:64051631-64051631|C/A|missense_variant SYNE2|p.S2573Y|1|0.11|ENSG00000054654|chr14:64051631-64051631|C/A|missense_variant SYNE2|p.S2573Y|1|0.11|ENSG00000054654|chr14:64051631-64051631|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2217102050781 3 375.532645 1123.5761 0.2275 8.5434E-05 -0.63073 -0.00023686 -0.40323 -0.00015143 375.5323917559935 33.432 0.45523 31.285 31.041 31.496 -2.1468 31 12 4 0 0 0 0.86693 1 5800 5800 3.8763 0 1 1773400 41595 25809 27633 27650 41029 41029 0.019259846866589214 SIEKKIDPPP 10 Unmodified _SIEKKIDPPP_ 0 0 0 REV__FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant REV__FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2174377441406 3 375.216768 1122.62847 -0.44694 -0.0001677 0.54113 0.00020304 0.094188 3.5341E-05 375.2168737559323 17.347 0.17152 16.075 15.938 16.109 -1.2722 6 4 2 0 0 0 0.75844 1 2543 2543 3.0723 0.33707 1 224510 + 41596 15373 27634 27651 41030 41030 0.07206567820276177 SIEMSSTKVI 10 Unmodified _SIEMSSTKVI_ 0 0 0 REV__nc|ENSG00000143702|Q5SW79-3|CEP170 REV__nc|ENSG00000143702|Q5SW79-3|CEP170 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7929077148438 2 547.791732 1093.56891 NaN NaN NaN NaN NaN NaN NaN 161.8 1 161.8 161.3 162.3 0 0 0 0 0.22588 1 32501 32501 9.3831 0 1 + 41597 16746 27635 27652 41031 41031 0.025869288145941027 SIENEDPLNYL 11 Unmodified _SIENEDPLNYL_ 0 0 0 REV__ENSG00000186103|ENST00000334384|ARGFX REV__ENSG00000186103|ENST00000334384|ARGFX MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22772216796875 3 436.21023 1305.60886 -0.12537 -5.4688E-05 1.0396 0.00045347 0.9142 0.00039878 436.21061766329655 69.155 0.87933 69.155 68.718 69.598 0 83 24 4 0 0 0 0.76282 1 13323 13323 7.4771 1.2852 1 24672000 + 41598 19012 27636 27653 41032 41032 -0.03171852981108714 SIEPLGRKVER 11 Unmodified _SIEPLGRKVER_ 0 0 0 ENSG00000163001|ENST00000349456|CFAP36;nc|ENSG00000163001|Q96G28-2|CFAP36 ENSG00000163001|ENST00000349456|CFAP36 ENSG00000163001|ENST00000349456|CFAP36 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 642.3453369140625 2 642.375143 1282.73573 NaN NaN NaN NaN NaN NaN NaN 166.38 1 161.4 160.9 161.9 -4.9811 0 0 0 0.18831 1 32605 32605 21.537 8.4945 1 41599 5392 27637 27654 41033 41033 0.10567537754513978 SIEQIVNL 8 Unmodified _SIEQIVNL_ 0 0 0 REV__ENSG00000188738|ENST00000424728|FSIP2 REV__ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2393493652344 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 111.52 1 107.29 106.79 107.79 -4.2289 0 0 0 0.17344 1 21466 21466 34.102 0 1 + 41600 19166 27638 27655 41034 41034 0.04662365177614447 SIEQVLNNFS 10 Unmodified _SIEQVLNNFS_ 0 0 0 ADAM21|p.D278N|1|0.3|ENSG00000139985|chr14:70458331-70458331|G/A|missense_variant ADAM21|p.D278N|1|0.3|ENSG00000139985|chr14:70458331-70458331|G/A|missense_variant ADAM21|p.D278N|1|0.3|ENSG00000139985|chr14:70458331-70458331|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3374633789062 2 575.790578 1149.5666 0.04138 2.3826E-05 -3.1279 -0.001801 -3.0865 -0.0017772 576.2906468345625 140.54 0.18538 135.89 135.73 135.91 -4.6493 6 4 2 0 0 0 0.84281 1 27743 27743 9.3831 1.2276 1 1009600 41601 54 27639 27656 41035 41035 -0.002197835988681618 SIERKYKY 8 Unmodified _SIERKYKY_ 0 0 0 REV__SLC9A9|p.N196Mfs*15|1|0.43|ENSG00000181804|chr3:143693254-143693254|T/-|frameshift_variant REV__SLC9A9|p.N196Mfs*15|1|0.43|ENSG00000181804|chr3:143693254-143693254|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7941284179688 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 135.05 1 130.15 129.65 130.65 -4.8951 0 0 0 0.21486 1 25939 25939 9.3474 0.75416 1 + 41602 18741 27640 27657 41036 41036 0.04757431851612637 SIESFIALTL 10 Unmodified _SIESFIALTL_ 0 0 0 REV__FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant REV__FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.785400390625 2 547.310615 1092.60668 0.12826 7.02E-05 0.53287 0.00029165 0.66114 0.00036185 547.3107762751087 144.79 0.54996 139.72 139.46 140.01 -5.0671 29 15 2 0 0 0 0.10354 1 27952 27952 58.679 0.95683 1 5171600 + 41603 14332 27641 27658 41037 41037 0.0640776307170654 SIESFVADI 9 Unmodified _SIESFVADI_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1;ENST00000379752.5_1_1:157030233-157030518:-|nuORF ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2762756347656 2 490.75039 979.486227 0.1866 9.1576E-05 -0.091265 -4.4788E-05 0.095338 4.6787E-05 490.7502540237096 125.47 0.49164 125.47 125.15 125.64 0 20 13 2 0 0 0 0.49001 1 24723 24723 21.747 0 1 1882600 41604 3239 27642 27659 41038 41038 -0.004336449219067617 SIESTRVY 8 Unmodified _SIESTRVY_ 0 0 0 REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72412109375 2 477.748182 953.481811 0.10946 5.2292E-05 0.52797 0.00025224 0.63742 0.00030453 477.74837028170583 83.395 1.0965 79.522 79.152 80.249 -3.8736 64 30 3 0 0 0 0.73426 1 15794 15794 9.3474 0 1 8300100 + 41605 16571 27643 27660 41039 41039 0.0032089065518903226 SIESTRVY 8 Unmodified _SIESTRVY_ 0 0 0 REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.748182 953.481811 0.33971 0.0001623 0.15735 7.5175E-05 0.49707 0.00023747 477.7481845184188 79.755 0.97308 79.755 79.411 80.384 0 0.18223 -0.00031514 NaN 9.3474 62 27 3 NaN NaN NaN NaN 0 NaN NaN 0 8177600 + 41606 16571 27643 27660 0.0032089065518903226 SIESTRVY 8 Unmodified _SIESTRVY_ 0 0 0 REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.748182 953.481811 -0.011544 -5.515E-06 0.61103 0.00029192 0.59949 0.0002864 477.74844150006646 83.074 1.0214 79.466 79.093 80.115 -3.6079 -0.10615 0.00011835 NaN 9.3474 53 28 3 NaN NaN NaN NaN 0 NaN NaN 0 8801500 + 41607 16571 27643 27660 0.0032089065518903226 SIESTRVY 8 Unmodified _SIESTRVY_ 0 0 0 REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.748182 953.481811 0.10946 5.2292E-05 0.52797 0.00025224 0.63742 0.00030453 477.74837028170583 83.395 1.0965 79.522 79.152 80.249 -3.8736 -0.050891 3.898E-05 NaN 9.3474 64 30 3 NaN NaN NaN NaN 0 NaN NaN 0 8300100 + 41608 16571 27643 27660 0.0032089065518903226 SIESTRVY 8 Unmodified _SIESTRVY_ 0 0 0 REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.748182 953.481811 -0.069284 -3.31E-05 0.84253 0.00040252 0.77325 0.00036942 477.74849151992584 83.246 1.0776 79.547 79.246 80.324 -3.6985 -0.025186 0.00033955 NaN 9.3474 66 30 3 NaN NaN NaN NaN 0 NaN NaN 0 8861800 + 41609 16571 27643 27660 0.0032089065518903226 SIESVCLDNYT 11 Unmodified _SIESVCLDNYT_ 0 0 0 REV__ENSG00000131864|ENST00000254181|USP29 REV__ENSG00000131864|ENST00000254181|USP29 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7811279296875 2 622.279186 1242.54382 0.20892 0.00013001 -0.33712 -0.00020978 -0.12819 -7.9773E-05 622.2788065367773 91.748 0.44985 91.748 91.426 91.876 0 20 12 2 0 0 0 0.48392 2 17917 17917;17961 38.176 18.919 1 1560600 + 41610 16091 27644 27661 41040;41041 41040 -0.06775170778655593 SIESVCLDNYT 11 Unmodified _SIESVCLDNYT_ 0 0 0 REV__ENSG00000131864|ENST00000254181|USP29 REV__ENSG00000131864|ENST00000254181|USP29 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.757080078125 2 622.279186 1242.54382 1.0139 0.00063091 -0.94886 -0.00059045 0.065014 4.0457E-05 622.2787135512068 96.162 0.60411 92.112 91.793 92.397 -4.0496 42 17 3 0 0 0 0.35379 3 18816 18816;18822;18869 57.722 28.64 1 4256900 + 41611 16091 27644 27661 41042;41043;41044 41042 -0.06775170778655593 SIESVCLDNYT 11 Unmodified _SIESVCLDNYT_ 0 0 0 REV__ENSG00000131864|ENST00000254181|USP29 REV__ENSG00000131864|ENST00000254181|USP29 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.78125 2 622.279186 1242.54382 0.35071 0.00021824 -0.10991 -6.8393E-05 0.24081 0.00014985 622.2792167883441 96.248 0.86258 92.013 91.676 92.539 -4.2348 48 24 3 0 0 0 0.35536 3 18371 18371;18389;18418 53.833 21.527 1 4328700 + 41612 16091 27644 27661 41045;41046;41047 41045 -0.06775170778655593 SIESVCLDNYT 11 Unmodified _SIESVCLDNYT_ 0 0 0 REV__ENSG00000131864|ENST00000254181|USP29 REV__ENSG00000131864|ENST00000254181|USP29 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.781982421875 2 622.279186 1242.54382 0.17399 0.00010827 -0.22645 -0.00014092 -0.052465 -3.2648E-05 622.2790188026353 95.921 0.50952 92.04 91.785 92.294 -3.881 26 14 2 0 0 0 0.35536 2 18434 18389;18434 53.833 26.204 1 3164100 + 41613 16091 27644 27661 41048;41049 41049 -0.06775170778655593 SIESVCLDNYT 11 Unmodified _SIESVCLDNYT_ 0 0 0 REV__ENSG00000131864|ENST00000254181|USP29 REV__ENSG00000131864|ENST00000254181|USP29 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 622.279186 1242.54382 1.0139 0.00063091 -0.94886 -0.00059045 0.065014 4.0457E-05 622.2787135512068 96.162 0.60411 92.112 91.793 92.397 -4.0496 0.13393 -0.00066017 NaN 57.722 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4256900 + 41614 16091 27644 27661 -0.06775170778655593 SIESVCLDNYT 11 Unmodified _SIESVCLDNYT_ 0 0 0 REV__ENSG00000131864|ENST00000254181|USP29 REV__ENSG00000131864|ENST00000254181|USP29 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 622.279186 1242.54382 0.17399 0.00010827 -0.22645 -0.00014092 -0.052465 -3.2648E-05 622.2790188026353 95.921 0.50952 92.04 91.785 92.294 -3.881 0.062167 0.00023891 NaN 57.722 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3164100 + 41615 16091 27644 27661 -0.06775170778655593 SIFACTWCI 9 Unmodified _SIFACTWCI_ 0 0 0 ENST00000182527.3_1_6:52372369-52373060:-|nuORF ENST00000182527.3_1_6:52372369-52373060:-|nuORF ENST00000182527.3_1_6:52372369-52373060:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2633056640625 2 522.238081 1042.46161 NaN NaN NaN NaN NaN NaN NaN 45.465 1 42.599 42.099 43.099 -2.8653 0 0 0 0.23508 1 8251 8251 6.7232 0 1 41616 8084 27645 27662 41050 41050 -0.05792319600641349 SIFASIQY 8 Unmodified _SIFASIQY_ 0 0 0 REV__ENST00000555275.5_1_14:58740703-58758361:-|nuORF REV__ENST00000555275.5_1_14:58740703-58758361:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 97.803 1 97.803 97.303 98.303 0 0 0 0 0.23312 1 19168 19168 0.68139 0 1 + 41617 22982 27646 27663 41051 41051 0.00354693631857117 SIFASIQY 8 Unmodified _SIFASIQY_ 0 0 0 REV__ENST00000555275.5_1_14:58740703-58758361:-|nuORF REV__ENST00000555275.5_1_14:58740703-58758361:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 117.5 1 113.09 112.59 113.59 -4.4088 0 0 0 0.23626 1 22614 22614 0.12286 0 1 + 41618 22982 27646 27663 41052 41052 0.00354693631857117 SIFDLAQY 8 Unmodified _SIFDLAQY_ 0 0 0 REV__nc|ENSG00000025770|Q6IBW4-5|NCAPH2 REV__nc|ENSG00000025770|Q6IBW4-5|NCAPH2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7396545410156 2 478.739825 955.465098 NaN NaN NaN NaN NaN NaN NaN 109.59 1 109.59 109.09 110.09 0 0 0 0 0.21323 1 21547 21547 14.582 0 1 + 41619 14002 27647 27664 41053 41053 -0.014416102307791334 SIFDRHPPP 9 Unmodified _SIFDRHPPP_ 0 0 0 REV__ENST00000545096.1_1_9:139981559-139982655:+|nuORF REV__ENST00000545096.1_1_9:139981559-139982655:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27734375 2 533.277441 1064.54033 NaN NaN NaN NaN NaN NaN NaN 111.51 1 107.09 106.59 107.59 -4.4231 0 0 0 0.22962 1 21972 21972 14.838 0.93222 1 + 41620 18549 27648 27665 41054 41054 0.01063992020317528 SIFGTIGSF 9 Unmodified _SIFGTIGSF_ 0 0 0 REV__ENST00000552207.1_1_12:56188062-56211500:-|nuORF REV__ENST00000552207.1_1_12:56188062-56211500:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 85.647 1 81.983 81.483 82.483 -3.6641 0 0 0 0.19657 1 16743 16743 0.40827 0.2854 1 + 41621 22943 27649 27666 41055 41055 0.003546936318684857 SIFLCLLDY 9 Unmodified _SIFLCLLDY_ 0 0 0 L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|110|2|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|110|2|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|110|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78515625 2 543.780636 1085.54672 NaN NaN NaN NaN NaN NaN NaN 155.81 1 150.56 150.06 151.06 -5.2526 0 0 0 0.23508 1 30214 30214 12.532 3.9383 1 41622 12041 27650 27667 41056 41056 0.007367491368313495 SIFRHHNIK 9 Unmodified _SIFRHHNIK_ 0 0 0 REV__ENST00000416133.1_1_X:136742915-136743272:+|nuORF REV__ENST00000416133.1_1_X:136742915-136743272:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3390502929688 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 121.9 1 117.36 116.86 117.86 -4.5476 0 0 0 0.23508 1 24027 24027 10.824 1.28 1 + 41623 21462 27651 27668 41057 41057 0.06666764931196667 SIFSHKEKS 9 Unmodified _SIFSHKEKS_ 0 0 0 REV__ENST00000481347.1_1_1:186312376-186313186:-|nuORF REV__ENST00000481347.1_1_1:186312376-186313186:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26513671875 2 531.782556 1061.55056 0.2898 0.00015411 -0.21436 -0.00011399 0.075442 4.0119E-05 531.7824355645753 41.574 0.8128 41.574 41.305 42.117 0 72 22 4 0 0 0 0.46882 1 7789 7789 21.537 2.175 1 20259000 + 41624 22175 27652 27669 41058 41058 0.022245549549097632 SIFSRVEEDY 10 Unmodified _SIFSRVEEDY_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.N1250Ifs*3|2|0.09|ENSG00000121741|chr13:20082954-20082954|A/-|frameshift_variant ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7817993164062 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 145.46 1 140.52 140.02 141.02 -4.9445 0 0 0 0.22588 1 28122 28122 7.609 1.4032 1 41625 3189 27653 27670 41059 41059 -0.03996104807015399 SIFWIKSY 8 Unmodified _SIFWIKSY_ 0 0 0 RAD1|p.G97Wfs*44|1|0.39|ENSG00000113456|chr5:34913488-34913489|-/A|frameshift_variant RAD1|p.G97Wfs*44|1|0.39|ENSG00000113456|chr5:34913488-34913489|-/A|frameshift_variant RAD1|p.G97Wfs*44|1|0.39|ENSG00000113456|chr5:34913488-34913489|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2826538085938 2 522.28166 1042.54877 NaN NaN NaN NaN NaN NaN NaN 128.81 1 124.19 123.69 124.69 -4.6292 0 0 0 0.21486 1 25396 25396 9.3474 0.75416 1 41626 12854 27654 27671 41060 41060 0.029195459369248056 SIFYDCTL 8 Unmodified _SIFYDCTL_ 0 0 0 REV__ENST00000574429.1_1_17:6544939-6545152:+|nuORF REV__ENST00000574429.1_1_17:6544939-6545152:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2516174316406 2 481.220411 960.426269 NaN NaN NaN NaN NaN NaN NaN 154.43 1 149.2 148.7 149.7 -5.2361 0 0 0 0.21323 1 29943 29943 14.582 0 1 + 41627 23164 27655 27672 41061 41061 -0.05552658856788639 SIGCNWSY 8 Unmodified _SIGCNWSY_ 0 0 0 REV__SNCAIP|p.S47Y|1|0.23|ENSG00000064692|chr5:122422877-122422877|C/A|missense_variant REV__SNCAIP|p.S47Y|1|0.23|ENSG00000064692|chr5:122422877-122422877|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2380065917969 2 465.194728 928.374903 0.18666 8.6835E-05 -3.2622 -0.0015175 -3.0755 -0.0014307 465.19504427947106 26.088 0.75483 26.088 25.74 26.495 0 65 21 4 0 0 0 0.73426 1 4639 4639 9.3474 0 1 4795200 + 41628 24662 27656 27673 41062 41062 -0.09214982830837926 SIGDARGNYI 10 Unmodified _SIGDARGNYI_ 0 0 0 REV__ENSG00000115232|ENST00000397033|ITGA4 REV__ENSG00000115232|ENST00000397033|ITGA4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2702026367188 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 102.09 1 102.09 101.59 102.59 0 0 0 0 2.8426 1 20050 20050 0.84494 0 1 + 41629 15412 27657 27674 41063 41063 -0.004609195675357114 SIGDYCSRF 9 Unmodified _SIGDYCSRF_ 0 0 0 ENSG00000198920|ENST00000361413|KIAA0753;nc|ENSG00000198920|Q2KHM9-2|KIAA0753 ENSG00000198920|ENST00000361413|KIAA0753 ENSG00000198920|ENST00000361413|KIAA0753 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6995239257812 2 524.231842 1046.44913 0.1804 9.4573E-05 4.3704 0.0022911 4.5508 0.0023857 524.2326442695911 138.53 0.17415 138.53 138.45 138.63 0 6 4 2 0 0 0 0.8319 1 27496 27496 4.3292 0.38484 1 2955700 41630 7527 27658 27675 41064 41064 -0.07223639739322607 SIGGRHYLY 9 Unmodified _SIGGRHYLY_ 0 0 0 ENST00000337385.7_1_21:35821964-35883431:-|nuORF ENST00000337385.7_1_21:35821964-35883431:-|nuORF ENST00000337385.7_1_21:35821964-35883431:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2620239257812 2 533.277441 1064.54033 NaN NaN NaN NaN NaN NaN NaN 156.89 1 156.89 156.39 157.39 0 0 0 0 0.23508 1 31480 31480 12.532 1.7076 1 41631 8816 27659 27676 41065 41065 0.01063992020317528 SIGIGDVTPG 10 Unmodified _SIGIGDVTPG_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.232421875 2 458.242732 914.470912 0.39995 0.00018327 -0.16307 -7.4724E-05 0.23688 0.00010855 458.2425625848969 30.309 1.1888 28.192 27.494 28.683 -2.1167 121 33 5 0 0 0 0.5575 1 5453 5453 21.537 0 1 65458000 41632 4752 27660 27677 41066 41066 0.010254882809022092 SIGIYNGAHD 10 Unmodified _SIGIYNGAHD_ 0 0 0 REV__DNAJC13|p.I470Tfs*3|1|0.04|ENSG00000138246|chr3:132457327-132457328|-/CATTT|frameshift_variant REV__DNAJC13|p.I470Tfs*3|1|0.04|ENSG00000138246|chr3:132457327-132457328|-/CATTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6842041015625 2 523.748713 1045.48287 NaN NaN NaN NaN NaN NaN NaN 156.36 1 156.36 155.86 156.86 0 0 0 0 0.22576 1 31368 31368 14.838 1.7958 1 + 41633 13722 27661 27678 41067 41067 -0.03804894975883144 SIGLKKAVEV 10 Unmodified _SIGLKKAVEV_ 0 0 0 REV__tr|U7T6P2|U7T6P2_FUSNUHelix-turn-helixdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00314PE=4SV=1 REV__tr|U7T6P2|U7T6P2_FUSNUHelix-turn-helixdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00314PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2821655273438 2 522.326599 1042.63865 NaN NaN NaN NaN NaN NaN NaN 160.25 1 160.25 159.75 160.75 0 0 0 0 0.22588 1 32178 32178 6.2058 0 1 + 41634 25451 27662 27679 41068 41068 0.11903175545512568 SIGNPPVSLLQ 11 Unmodified _SIGNPPVSLLQ_ 0 0 0 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 562.5400390625 2 562.819138 1123.62372 -0.013602 -7.6557E-06 4.3009 0.0024206 4.2873 0.002413 563.3227979639901 143.75 0.34491 139.09 138.9 139.24 -4.656 12 9 2 0 0 0 0.92792 1 28473 28473 5.2969 1.3525 1 3599700 41635 4210 27663 27680 41069 41069 0.06685683677528687 SIGNPPVSLLQ 11 Unmodified _SIGNPPVSLLQ_ 0 0 0 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1 USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 562.819138 1123.62372 0.079357 4.4663E-05 6.9558 0.0039148 7.0351 0.0039595 562.8213861506046 144.01 0.13681 138.94 138.87 139.01 -5.0671 -0.075828 0.0015749 NaN 5.2969 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1019100 41636 4210 27663 27680 0.06685683677528687 SIGSVVSLGP 10 Unmodified _SIGSVVSLGP_ 0 0 0 REV__nc|ENSG00000165219|Q14C86-3|GAPVD1 REV__nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2198791503906 2 458.260925 914.507297 0.27842 0.00012759 0.051199 2.3463E-05 0.32961 0.00015105 458.26091785251447 85.247 0.91719 85.247 84.942 85.859 0 32 25 2 0 0 0 0.71097 1 16579 16579 10.074 0 1 1407500 + 41637 17747 27664 27681 41070 41070 0.04662365177625816 SIGTVATIPG 10 Unmodified _SIGTVATIPG_ 0 0 0 tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1 tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1 tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2385559082031 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 91.769 1 87.844 87.344 88.344 -3.9251 0 0 0 0.15474 1 17966 17966 36.127 9.2434 1 41638 25905 27665 27682 41071 41071 0.04662365177625816 SIGVAMDELM 10 Unmodified _SIGVAMDELM_ 0 0 0 REV__ENST00000512630.5_1_4:143007384-143094853:-|nuORF REV__ENST00000512630.5_1_4:143007384-143094853:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2822265625 2 533.251385 1064.48822 0.22142 0.00011807 -2.3469 -0.0012515 -2.1255 -0.0011334 533.7520259964843 155.55 0.68024 150.77 150.34 151.02 -4.7791 22 18 2 0 0 0 0.59928 1 30882 30882 19.257 7.6167 1 1482600 + 41639 22559 27666 27683 41072 41072 -0.04144675499969708 SIGVTFYHAA 10 Unmodified _SIGVTFYHAA_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1;TBK1|p.I397Nfs*5|1|0.2|ENSG00000183735|chr12:64484493-64484494|-/A|frameshift_variant ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2859497070312 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 91.92 1 87.995 87.495 88.495 -3.9251 0 0 0 0.17827 1 17997 17997 32.305 8.2849 1 41640 6863 27667 27684 41073 41073 -0.0005883007381726202 SIGWIPMGT 9 Unmodified _SIGWIPMGT_ 0 0 0 REV__ENST00000551556.1_1_12:93965712-93966120:+|nuORF REV__ENST00000551556.1_1_12:93965712-93966120:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2534484863281 2 481.244221 960.473888 0.3191 0.00015356 1.761 0.00084749 2.0801 0.001001 481.2447600690311 100.98 0.5555 96.994 96.789 97.345 -3.9895 23 15 2 0 0 0 0.54076 1 19383 19383 14.838 2.3067 1 592860 + 41641 22935 27668 27685 41074 41074 -0.007929598659416115 SIHDAWFQQL 10 Unmodified _SIHDAWFQQL_ 0 0 0 REV__ENSG00000204659|ENST00000376974|CBY3 REV__ENSG00000204659|ENST00000376974|CBY3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7715454101562 2 622.806562 1243.59857 NaN NaN NaN NaN NaN NaN NaN 174.22 1 169.43 168.93 169.93 -4.7898 0 0 0 0.22588 1 35582 35582 6.7232 0 1 + 41642 19559 27669 27686 41075 41075 -0.013483711250501074 SIHDKIIEKLY 11 Unmodified _SIHDKIIEKLY_ 0 0 0 REV__tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 REV__tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7532043457031 3 453.594127 1357.76055 -0.14138 -6.4131E-05 0.23854 0.0001082 0.097152 4.4068E-05 453.594032190946 91.706 0.58191 87.781 87.441 88.023 -3.9251 35 16 3 0 0 0 0.96157 1 17983 17983 4.7159 0.59929 1 1786900 + 41643 25102 27670 27687 41076 41076 0.09598172837263519 SIHDVTFQV 9 Unmodified _SIHDVTFQV_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant;IBTK|p.F642Vfs*29|1|0.2|ENSG00000005700|chr6:82214507-82214508|-/C|frameshift_variant;IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6978149414062 2 523.269281 1044.52401 0.35753 0.00018708 -0.050598 -2.6477E-05 0.30693 0.00016061 523.2692141338661 107.71 0.87169 107.71 107.3 108.18 0 60 24 3 0 0 0 0.10297 1 21114 21114 54.774 22.468 1 15156000 41644 994 27671 27688 41077 41077 0.0035286606357658457 SIHDVTFQV 9 Unmodified _SIHDVTFQV_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant;IBTK|p.F642Vfs*29|1|0.2|ENSG00000005700|chr6:82214507-82214508|-/C|frameshift_variant;IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6889038085938 2 523.269281 1044.52401 -0.43864 -0.00022953 0.94124 0.00049252 0.5026 0.00026299 523.2695535073607 111.93 1.1777 107.51 106.96 108.14 -4.4231 95 33 5 0 0 0 0.71527 1 22153 22153 19.257 9.1831 1 20071000 41645 994 27671 27688 41078 41078 0.0035286606357658457 SIHDVTFQV 9 Unmodified _SIHDVTFQV_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant;IBTK|p.F642Vfs*29|1|0.2|ENSG00000005700|chr6:82214507-82214508|-/C|frameshift_variant;IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6793212890625 2 523.269281 1044.52401 0.65293 0.00034166 -0.47325 -0.00024764 0.17968 9.4022E-05 523.2689809413087 111.71 0.90579 107.48 107.04 107.95 -4.2289 66 25 3 0 0 0 2.5268E-05 1 21475 21475 133.7 81.434 1 15696000 41646 994 27671 27688 41079 41079 0.0035286606357658457 SIHDVTFQV 9 Unmodified _SIHDVTFQV_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant;IBTK|p.F642Vfs*29|1|0.2|ENSG00000005700|chr6:82214507-82214508|-/C|frameshift_variant;IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.269281 1044.52401 -0.63336 -0.00033142 1.1656 0.00060995 0.53229 0.00027853 523.2697204000842 112.02 0.9044 107.5 107.03 107.94 -4.5259 -0.052161 0.00072486 NaN 133.7 84 25 5 NaN NaN NaN NaN 0 NaN NaN 0 18540000 41647 994 27671 27688 0.0035286606357658457 SIHEFMDLC 9 Unmodified _SIHEFMDLC_ 0 0 0 REV__ENSG00000186115|ENST00000221700|CYP4F2 REV__ENSG00000186115|ENST00000221700|CYP4F2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7903442382812 2 547.735902 1093.45725 NaN NaN NaN NaN NaN NaN NaN 144.11 1 144.11 143.61 144.61 0 0 0 0 0.23508 1 28781 28781 4.756 0 1 + 41648 19013 27672 27689 41080 41080 -0.08573828814201079 SIHIFATHLL 10 Unmodified _SIHIFATHLL_ 0 0 0 REV__ENST00000475841.2_1_12:132611152-132611335:+|nuORF REV__ENST00000475841.2_1_12:132611152-132611335:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33203125 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 47.898 1 44.956 44.456 45.456 -2.9421 0 0 0 2.8426 1 8739 8739 1.0651 0 1 + 41649 22100 27673 27690 41081 41081 0.08057997639662062 SIHIPQVAMV 10 Unmodified _SIHIPQVAMV_ 0 0 0 ENST00000566056.1_1_16:30959736-30965162:+|nuORF ENST00000566056.1_1_16:30959736-30965162:+|nuORF ENST00000566056.1_1_16:30959736-30965162:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7694702148438 2 547.804977 1093.5954 NaN NaN NaN NaN NaN NaN NaN 161.57 1 161.57 161.07 162.07 0 0 0 0 0.22588 1 32452 32452 9.3831 0 1 41650 11362 27674 27691 41082 41082 0.05234662496582132 SIHSDEEDD 9 Unmodified _SIHSDEEDD_ 0 0 0 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;ENST00000561079.1_1_15:51755569-51758496:-|nuORF DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6983642578125 2 523.699083 1045.38361 NaN NaN NaN NaN NaN NaN NaN 170.42 1 170.42 169.92 170.92 0 0 0 0 0.23508 1 35038 35038 4.3292 1.7518 1 41651 858 27675 27692 41083 41083 -0.13726382451318386 SIHTLTEV 8 Unmodified _SIHTLTEV_ 0 0 0 nc|ENSG845|O71037|ERVK-19_env nc|ENSG845|O71037|ERVK-19_env nc|ENSG845|O71037|ERVK-19_env MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.11383056640625 2 450.245275 898.475997 0.24765 0.0001115 0.06683 3.009E-05 0.31448 0.00014159 450.2453638147729 72.028 0.53439 68.401 68.197 68.731 -3.6275 20 14 2 0 0 0 0.99494 1 13555 13555 0.52476 0 1 1020700 41652 12667 27676 27693 41084 41084 0.022697921435110402 SIHVTTTD 8 Unmodified _SIHVTTTD_ 0 0 0 REV__ENSG00000101542|ENST00000262717|CDH20 REV__ENSG00000101542|ENST00000262717|CDH20 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21905517578125 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 45.18 1 42.314 41.814 42.814 -2.8653 0 0 0 0.21486 1 8197 8197 7.9102 2.1497 1 + 41653 14793 27677 27694 41085 41085 -0.017353712702515622 SIIAAASEAP 10 Unmodified _SIIAAASEAP_ 0 0 0 ENST00000538510.1_1_X:100486556-100490906:+|nuORF;ENST00000402866.5_1_X:100475106-100490906:+|nuORF ENST00000538510.1_1_X:100486556-100490906:+|nuORF ENST00000538510.1_1_X:100486556-100490906:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2509765625 2 465.250557 928.486562 0.15128 7.0383E-05 -0.24554 -0.00011424 -0.094264 -4.3856E-05 465.2504925341325 31.323 0.56074 31.323 31.04 31.6 0 22 15 2 0 0 0 0.32088 1 5623 5623 36.127 3.8215 1 851050 41654 9520 27678 27695 41086 41086 0.019457747979458873 SIIAEVKAQ 9 Unmodified _SIIAEVKAQ_ 0 0 0 CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__O95678;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5;KRT79|p.E398Gfs*31|1|0.35|ENSG00000185640|chr12:52823190-52823191|-/C|frameshift_variant;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;ENST00000546453.1_1_12:53215658-53224087:-|nuORF;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__P50446;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000016045;CON__Q5XQN5;CON__P48668;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;CON__Q922U2;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;CON__P04259;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;CON__Q8VED5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT75|p.L391Ffs*7|1|0.2|ENSG00000170454|chr12:52428465-52428466|-/A|frameshift_variant;ENSG00000170454|ENST00000252245|KRT75;KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908;CON__Q8BGZ7;ENSG00000167768|ENST00000252244|KRT1;CON__P04264 CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;KRT75|p.L391Ffs*7|1|0.2|ENSG00000170454|chr12:52428465-52428466|-/A|frameshift_variant;KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant;CON__Q8BGZ7;ENSG00000167768|ENST00000252244|KRT1 CON__H-INV:HIT000292931 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.67779541015625 3 320.190442 957.549496 -0.32184 -0.00010305 0.40109 0.00012842 0.079251 2.5375E-05 320.19049614337246 40.182 0.71007 40.182 39.789 40.499 0 47 19 3 0 0 0 0.53499 1 7393 7393 1.2148 0 1 4459300 + 41655 647;658;5847;673;6069;704 27679 27696 41087 41087 0.0690234058599799 SIIAMSCIEK 10 Unmodified _SIIAMSCIEK_ 0 0 0 REV__ARHGEF10L|p.V1238M|1|0.36|ENSG00000074964|chr1:17697252-17697252|G/A|missense_variant REV__ARHGEF10L|p.V1238M|1|0.36|ENSG00000074964|chr1:17697252-17697252|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.783935546875 2 547.782853 1093.55115 NaN NaN NaN NaN NaN NaN NaN 155.21 1 150.43 149.93 150.93 -4.7791 0 0 0 2.8426 1 30853 30853 0.26539 0.058062 1 + 41656 13107 27680 27697 41088 41088 0.008118902880823953 SIICTLVTL 9 Unmodified _SIICTLVTL_ 0 0 0 REV__MRGPRX1|p.V37I|1|0.1|ENSG00000170255|chr11:18934676-18934676|C/T|missense_variant REV__MRGPRX1|p.V37I|1|0.1|ENSG00000170255|chr11:18934676-18934676|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7838439941406 2 481.783179 961.551804 NaN NaN NaN NaN NaN NaN NaN 154 1 149.23 148.73 149.73 -4.7684 0 0 0 0.23508 1 30605 30605 7.9102 0 1 + 41657 23877 27681 27698 41089 41089 0.0694905299947095 SIIDKLVNI 9 Unmodified _SIIDKLVNI_ 0 0 0 KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant;nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;KITLG|p.G209Wfs*41|1|0.41|ENSG00000049130|chr12:88507118-88507119|-/G|frameshift_variant;ENSG00000049130|ENST00000644744|KITLG KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 508.805908203125 2 507.813325 1013.6121 -0.17267 -8.7686E-05 0.10115 5.1364E-05 -0.071528 -3.6323E-05 507.8133680267643 166.75 0.20447 161.8 161.7 161.9 -4.948 12 5 3 0 0 0 0.066439 1 32736 32736 67.187 35.459 1 22350000 41658 1234 27682 27699 41090 41090 0.10583486654184071 SIIDKLVNI 9 Unmodified _SIIDKLVNI_ 0 0 0 KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant;nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;KITLG|p.G209Wfs*41|1|0.41|ENSG00000049130|chr12:88507118-88507119|-/G|frameshift_variant;ENSG00000049130|ENST00000644744|KITLG KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 507.813325 1013.6121 0.42397 0.0002153 0.2033 0.00010324 0.62727 0.00031853 507.813481605899 166.73 0.20465 161.78 161.68 161.89 -4.9484 -0.0093875 7.6792E-05 NaN 67.187 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 22734000 41659 1234 27682 27699 0.10583486654184071 SIIEPSDPSV 10 Unmodified _SIIEPSDPSV_ 0 0 0 REV__ENSG00000164080|ENST00000684192|RAD54L2 REV__ENSG00000164080|ENST00000684192|RAD54L2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2808837890625 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 122 1 117.47 116.97 117.97 -4.5305 0 0 0 0.22583 1 23488 23488 13.906 1.3745 1 + 41660 17646 27683 27700 41091 41091 -0.001302772387589357 SIIEPSDPSV 10 Unmodified _SIIEPSDPSV_ 0 0 0 REV__ENSG00000164080|ENST00000684192|RAD54L2 REV__ENSG00000164080|ENST00000684192|RAD54L2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2717895507812 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 122.05 1 117.52 117.02 118.02 -4.5305 0 0 0 0.22583 1 23498 23498 13.906 3.8321 1 + 41661 17646 27683 27700 41092 41092 -0.001302772387589357 SIIGRDEHSDD 11 Unmodified _SIIGRDEHSDD_ 0 0 0 REV__nc|ENSG00000158966|Q5VU97-2|CACHD1 REV__nc|ENSG00000158966|Q5VU97-2|CACHD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7659912109375 2 622.281106 1242.54766 0.40713 0.00025335 -1.9774 -0.0012305 -1.5703 -0.00097715 622.2784572864268 160.78 0.13947 160.78 160.71 160.85 0 5 3 2 0 0 0 0.7876 1 32292 32292 5.2969 1.3525 1 3121500 + 41662 13231 27684 27701 41093 41093 -0.06391364960586543 SIIKPQNTY 9 Unmodified _SIIKPQNTY_ 0 0 0 nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT nc|ENSG00000164362|O14746-4|TERT nc|ENSG00000164362|O14746-4|TERT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.26171875 2 532.292756 1062.57096 -0.21151 -0.00011259 -0.57325 -0.00030514 -0.78476 -0.00041772 532.2920382451133 111.71 1.1606 107.29 106.68 107.84 -4.4231 70 32 3 0 0 0 0.34411 1 21952 21952 29.082 6.4235 1 5051200 41663 5540 27685 27702 41094 41094 0.04217725614716983 SIIPHDFRR 9 Unmodified _SIIPHDFRR_ 0 0 0 ITGAM|p.H481Ifs*44|1|0.12|ENSG00000169896|chr16:31297593-31297593|C/-|frameshift_variant;ENSG00000169896|ENST00000544665|ITGAM;nc|ENSG00000169896|P11215-2|ITGAM ITGAM|p.H481Ifs*44|1|0.12|ENSG00000169896|chr16:31297593-31297593|C/-|frameshift_variant ITGAM|p.H481Ifs*44|1|0.12|ENSG00000169896|chr16:31297593-31297593|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2138366699219 3 380.880602 1139.61998 -0.53402 -0.0002034 0.17251 6.5707E-05 -0.3615 -0.00013769 381.2152332698317 39.432 0.6629 37.027 36.69 37.353 -2.4049 39 18 3 0 0 0 0.56084 1 6992 6992 0.40827 0.40488 1 1247900 41664 6018 27686 27703 41095 41095 0.055750586943076996 SIIPLFGPY 9 Unmodified _SIIPLFGPY_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;DOCK4|p.K1325Nfs*6|1|0.17|ENSG00000128512|chr7:111765136-111765136|T/-|frameshift_variant nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.1920166015625 3 336.191783 1005.55352 NaN NaN NaN NaN NaN NaN NaN 143.95 1 138.88 138.38 139.38 -5.0671 0 0 0 0.23508 1 27757 27757 1.0715 0 1 41665 3525 27687 27704 41096 41096 0.05096430079720449 SIIQTDFR 8 Unmodified _SIIQTDFR_ 0 0 0 ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF ENSG00000214063|ENST00000397397|TSPAN4 ENSG00000214063|ENST00000397397|TSPAN4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26470947265625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 99.04 1 99.04 98.54 99.54 0 0 0 0 0.22757 1 19422 19422 3.5871 3.3356 1 41666 7720 27688 27705 41097 41097 0.023328834091330464 SIIRGRATG 9 Unmodified _SIIRGRATG_ 0 0 0 ENSG00000196600|ENST00000306494|SLC22A25;SLC22A25|p.I460N|1|0.59|ENSG00000196600|chr11:63164541-63164541|A/T|missense_variant ENSG00000196600|ENST00000306494|SLC22A25 ENSG00000196600|ENST00000306494|SLC22A25 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2547912597656 2 465.777608 929.540663 0.3182 0.00014821 -0.41712 -0.00019429 -0.098919 -4.6074E-05 465.77732183280074 122.22 1.6147 117.69 116.75 118.36 -4.5305 66 44 2 0 0 0 0.65155 1 23377 23377 15.847 7.937 1 982770 41667 7290 27689 27706 41098 41098 0.07307411740180214 SIISQEQN 8 Unmodified _SIISQEQN_ 0 0 0 REV__nc|ENSG00000129197|Q86UA6-3|RPAIN REV__nc|ENSG00000129197|Q86UA6-3|RPAIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353515625 2 459.729989 917.445425 -0.072714 -3.3429E-05 1.9598 0.00090099 1.8871 0.00086756 459.7301495691557 40.705 0.94946 38.165 37.78 38.73 -2.5398 43 26 2 0 0 0 8448 1 7243 7243 3.5871 1.8448 1 2320200 + 41668 15952 27690 27707 41099 41099 -0.01659986241520528 SIIYHPSL 8 Unmodified _SIIYHPSL_ 0 0 0 nc|ENSG00000144908|O75891-2|ALDH1L1;ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;ALDH1L1|p.F245Sfs*5|1|0.17|ENSG00000144908|chr3:126153568-126153568|A/-|frameshift_variant;nc|ENSG00000144908|O75891-4|ALDH1L1;ENST00000473607.5_1_3:125854214-125879740:-|nuORF nc|ENSG00000144908|O75891-2|ALDH1L1 nc|ENSG00000144908|O75891-2|ALDH1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2591247558594 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 148.91 1 144.2 143.7 144.7 -4.7095 0 0 0 0.20896 1 29572 29572 18.135 0 1 41669 4584 27691 27708 41100 41100 0.034706863857991266 SIKELGEFR 9 Unmodified _SIKELGEFR_ 0 0 0 REV__ENST00000493171.5_1_1:110201318-110203873:+|nuORF REV__ENST00000493171.5_1_1:110201318-110203873:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20123291015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 141.29 1 136.31 135.81 136.81 -4.9877 0 0 0 0.23508 1 27207 27207 2.2828 0 1 + 41670 16195 27692 27709 41101 41101 0.0461712798901317 SIKIALSVKK 10 Unmodified _SIKIALSVKK_ 0 0 0 ENST00000265070.6_1_5:32126678-32126735:-|nuORF ENST00000265070.6_1_5:32126678-32126735:-|nuORF ENST00000265070.6_1_5:32126678-32126735:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7827758789062 2 543.865892 1085.71723 0.15578 8.4724E-05 -2.7937 -0.0015194 -2.6379 -0.0014347 544.3674436466657 151.37 0.14307 146.13 146.07 146.22 -5.2365 5 3 2 0 0 0 0.5313 1 29329 29329 0.043787 0 1 1094600 41671 8348 27693 27710 41102 41102 0.1778002785060835 SIKKRIFFLII 11 Unmodified _SIKKRIFFLII_ 0 0 0 REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 REV__tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2481994628906 3 459.970869 1376.89078 NaN NaN NaN NaN NaN NaN NaN 113.76 1 109.3 108.8 109.8 -4.4539 0 0 0 0.23698 1 22413 22413 0.45452 0.046251 1 + 41672 24996 27694 27711 41103 41103 0.21740813626888666 SIKKVLKKR 9 Unmodified _SIKKVLKKR_ 0 0 0 nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 550.4995727539062 2 550.387326 1098.7601 NaN NaN NaN NaN NaN NaN NaN 166.92 1 162.03 161.53 162.53 -4.8916 0 0 0 0.19656 1 32760 32760 0.0033805 0 1 41673 7376 27695 27712 41104 41104 0.21466842698669097 SIKKVPKFANK 11 Unmodified _SIKKVPKFANK_ 0 0 0 REV__tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1 REV__tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7503051757812 2 630.395348 1258.77614 0.62584 0.00039452 -1.7183 -0.0010832 -1.0924 -0.00068866 630.8954744475977 153.98 0.24913 148.76 148.66 148.91 -5.2209 8 6 2 0 0 0 0.96036 1 29855 29855 2.4985 0 1 1256700 + 41674 24916 27696 27713 41105 41105 0.15710504144931292 SIKLEKDRKQ 10 Unmodified _SIKLEKDRKQ_ 0 0 0 REV__ENST00000319410.9_1_16:75661640-75661775:-|nuORF REV__ENST00000319410.9_1_16:75661640-75661775:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7532348632812 2 622.869694 1243.72483 NaN NaN NaN NaN NaN NaN NaN 171.66 1 171.66 171.16 172.16 0 0 0 0 0.22588 1 35383 35383 10.8 1.4164 1 + 41675 20539 27697 27714 41106 41106 0.11272135380227155 SIKNYLNNL 9 Unmodified _SIKNYLNNL_ 0 0 0 REV__tr|U7SLK0|U7SLK0_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01956PE=4SV=1 REV__tr|U7SLK0|U7SLK0_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01956PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 135.78 1 135.78 135.28 136.28 0 0 0 0 0.23508 1 26897 26897 1.0715 0 1 + 41676 24945 27698 27715 41107 41107 0.046171279889904326 SIKPKVAKINY 11 Unmodified _SIKPKVAKINY_ 0 0 0 REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7774658203125 2 630.887355 1259.76016 NaN NaN NaN NaN NaN NaN NaN 118.18 1 113.68 113.18 114.18 -4.502 0 0 0 0.2367 1 23296 23296 2.9952 0.26005 1 + 41677 24943 27699 27716 41108 41108 0.1406679790804901 SIKQRASFK 9 Unmodified _SIKQRASFK_ 0 0 0 ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3 ENSG00000146197|ENST00000274938|SCUBE3 ENSG00000146197|ENST00000274938|SCUBE3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2682495117188 2 532.81419 1063.61383 0.58432 0.00031134 0.27801 0.00014813 0.86233 0.00045946 532.8140188942866 74.18 1.1383 70.504 70.07 71.208 -3.6764 44 32 2 0 0 0 0.59129 1 14152 14152 0.40827 0 1 2711100 41678 4643 27700 27717 41109 41109 0.08456540462793782 SIKRKKYLQP 10 Unmodified _SIKRKKYLQP_ 0 0 0 REV__AluJr_dup72800|chr17:59204747-59205047:+|1.9610225923897493|0.1893768988027336|3.37|478.0|10|3|sense REV__AluJr_dup72800|chr17:59204747-59205047:+|1.9610225923897493|0.1893768988027336|3.37|478.0|10|3|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7603759765625 2 630.892972 1259.77139 NaN NaN NaN NaN NaN NaN NaN 142.55 1 142.55 142.05 143.05 0 0 0 0 0.22576 1 28422 28422 14.838 6.0929 1 + 41679 13019 27701 27718 41110 41110 0.15189620002161064 SIKTKKKALY 10 Unmodified _SIKTKKKALY_ 0 0 0 REV__ENSG00000075826|ENST00000370345|SEC31B REV__ENSG00000075826|ENST00000370345|SEC31B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2495727539062 2 590.376623 1178.73869 NaN NaN NaN NaN NaN NaN NaN 139.74 1 134.89 134.39 135.39 -4.8492 0 0 0 0.22588 1 26945 26945 3.9444 0.94915 1 + 41680 14339 27702 27719 41111 41111 0.15647412879320655 SIKTLYANAL 10 Unmodified _SIKTLYANAL_ 0 0 0 MROH2A|p.L1521Sfs*47|1|0.43|ENSG00000185038|chr2:233829730-233829730|C/-|frameshift_variant;ENSG00000185038|ENST00000389758|MROH2A MROH2A|p.L1521Sfs*47|1|0.43|ENSG00000185038|chr2:233829730-233829730|C/-|frameshift_variant MROH2A|p.L1521Sfs*47|1|0.43|ENSG00000185038|chr2:233829730-233829730|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7703247070312 2 547.316232 1092.61791 0.32069 0.00017552 3.2673 0.0017883 3.588 0.0019638 547.3181364164026 118.28 0.14531 118.28 118.15 118.29 0 5 3 2 0 0 0 0.64074 1 23288 23288 21.537 1.0834 1 1530600 41681 6955 27703 27720 41112 41112 0.07530585165818593 SIKTLYANAL 10 Unmodified _SIKTLYANAL_ 0 0 0 MROH2A|p.L1521Sfs*47|1|0.43|ENSG00000185038|chr2:233829730-233829730|C/-|frameshift_variant;ENSG00000185038|ENST00000389758|MROH2A MROH2A|p.L1521Sfs*47|1|0.43|ENSG00000185038|chr2:233829730-233829730|C/-|frameshift_variant MROH2A|p.L1521Sfs*47|1|0.43|ENSG00000185038|chr2:233829730-233829730|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.316232 1092.61791 0.49568 0.00027129 -3.1572 -0.001728 -2.6615 -0.0014567 547.8153460892536 123.21 0.17101 118.47 118.4 118.57 -4.731 0.099378 -0.0055053 NaN 21.537 8 4 3 NaN NaN NaN NaN 0 NaN NaN 0 932990 41682 6955 27703 27720 0.07530585165818593 SIKVVKKLKL 10 Unmodified _SIKVVKKLKL_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 578.4439697265625 2 578.413009 1154.81146 NaN NaN NaN NaN NaN NaN NaN 164.04 1 158.98 158.48 159.48 -5.0648 0 0 0 0.22588 1 31962 31962 0.40072 0 1 41683 9915 27704 27721 41113 41113 0.24025166672731757 SIKYKKNIE 9 Unmodified _SIKYKKNIE_ 0 0 0 REV__tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 REV__tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2228698730469 3 374.888763 1121.64446 -0.14872 -5.5753E-05 -0.12255 -4.5942E-05 -0.27127 -0.0001017 374.88856949134714 22.874 0.45242 22.874 22.643 23.096 0 21 12 2 0 0 0 0.81492 1 3915 3915 1.0715 0 1 1600100 + 41684 25053 27705 27722 41114 41114 0.08850274057158458 SILADLQAYKG 11 Unmodified _SILADLQAYKG_ 0 0 0 ENSG00000197872|ENST00000381323|CYRIA ENSG00000197872|ENST00000381323|CYRIA ENSG00000197872|ENST00000381323|CYRIA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2621459960938 2 589.824421 1177.63429 0.27199 0.00016042 0.24349 0.00014362 0.51548 0.00030404 589.8246121442747 140.32 0.91129 135.46 134.91 135.82 -4.8557 55 25 3 0 0 0 0.098571 1 27015 27015 4.6037 1.0111 1 6337300 41685 7408 27706 27723 41115 41115 0.05257666331908695 SILASIKGIPA 11 Unmodified _SILASIKGIPA_ 0 0 0 ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant;ENSG00000154265|ENST00000392676|ABCA5;nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ABCA5|p.F1078Lfs*6|2|0.34|ENSG00000154265|chr17:69264816-69264816|A/-|frameshift_variant ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5598449707031 3 357.225375 1068.6543 -0.18733 -6.6919E-05 0.43645 0.00015591 0.24912 8.8992E-05 357.2255268760855 21.286 0.20955 19.901 19.793 20.002 -1.3847 7 5 2 0 0 0 0.80759 1 3356 3356 2.6312 0.72486 1 283080 41686 12 27707 27724 41116 41116 0.12271462062562932 SILDLHKRL 9 Unmodified _SILDLHKRL_ 0 0 0 REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant REV__MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.780029296875 2 547.837665 1093.66078 0.24757 0.00013563 -0.22879 -0.00012534 0.01878 1.0288E-05 547.8373384682192 143.06 0.13235 138.4 138.3 138.44 -4.656 5 3 2 0 0 0 0.74655 1 28277 28277 15.847 0 1 1102600 + 41687 15279 27708 27725 41117 41117 0.11769400013940867 SILEAVPQV 9 Unmodified _SILEAVPQV_ 0 0 0 ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7391662597656 2 478.276575 954.538597 0.35562 0.00017008 -0.27569 -0.00013186 0.079928 3.8228E-05 478.27659152902464 149.94 0.8125 144.82 144.5 145.31 -5.1204 44 22 3 0 0 0 0.041463 1 29075 29075 26.995 22.279 1 2539200 41688 4072 27709 27726 41118 41118 0.0595093821170849 SILEAVPQV 9 Unmodified _SILEAVPQV_ 0 0 0 ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.276575 954.538597 0.12254 5.8608E-05 0.12916 6.1773E-05 0.2517 0.00012038 478.27666604078786 150.1 0.76456 144.91 144.57 145.34 -5.1994 0.041893 0.00012704 NaN 26.995 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2102900 41689 4072 27709 27726 0.0595093821170849 SILEHLQRR 9 Unmodified _SILEHLQRR_ 0 0 0 ENSG00000060140|ENST00000075503|STYK1 ENSG00000060140|ENST00000075503|STYK1 ENSG00000060140|ENST00000075503|STYK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3327026367188 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 48.753 1 45.754 45.254 46.254 -2.999 0 0 0 0.19679 1 8904 8904 0.12781 0 1 41690 1305 27710 27727 41119 41119 0.08778730240078403 SILEHQIQV 9 Unmodified _SILEHQIQV_ 0 0 0 MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4 MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2615356445312 2 533.798206 1065.58186 0.55909 0.00029844 -0.63026 -0.00033643 -0.071169 -3.799E-05 533.7978136287957 101.47 1.0179 101.47 100.94 101.96 0 81 28 4 0 0 0 0.12663 1 19896 19896 41.956 14.327 1 31470000 41691 2251 27711 27728 41120 41120 0.05169127988983746 SILEHQIQV 9 Unmodified _SILEHQIQV_ 0 0 0 MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4 MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.279541015625 2 533.798206 1065.58186 -0.18876 -0.00010076 0.11542 6.161E-05 -0.073343 -3.915E-05 533.7982488172113 105.41 0.94962 101.14 100.67 101.62 -4.2638 85 26 4 0 0 0 0.029747 1 20719 20719 89.401 20.296 1 39831000 41692 2251 27711 27728 41121 41121 0.05169127988983746 SILEHQIQV 9 Unmodified _SILEHQIQV_ 0 0 0 MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4 MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2659912109375 2 533.798206 1065.58186 0.43576 0.00023261 -0.45788 -0.00024442 -0.022117 -1.1806E-05 533.7979093511395 105.58 0.95164 101.21 100.73 101.68 -4.3764 83 26 4 0 0 0 0.021579 1 20218 20218 110.67 31.947 1 37724000 41693 2251 27711 27728 41122 41122 0.05169127988983746 SILEHQIQV 9 Unmodified _SILEHQIQV_ 0 0 0 MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4 MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2642211914062 2 533.798206 1065.58186 0.80439 0.00042938 -0.9325 -0.00049777 -0.12812 -6.8388E-05 533.7976807284359 105.38 0.95357 101.29 100.79 101.75 -4.0913 81 26 4 0 0 0 0.27865 1 20255 20255 49.933 6.0747 1 32433000 41694 2251 27711 27728 41123 41123 0.05169127988983746 SILEKFSVR 9 Unmodified _SILEKFSVR_ 0 0 0 ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21282958984375 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 63.234 1 63.234 62.734 63.734 0 0 0 0 0.23508 1 12156 12156 6.6304 0.43853 1 41695 232 27712 27729 41124 41124 0.0825400488570267 SILERSENV 9 Unmodified _SILERSENV_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6908569335938 2 523.77747 1045.54039 0.015686 8.2158E-06 -0.24379 -0.00012769 -0.2281 -0.00011947 523.7773786600866 56.204 1.0122 56.204 55.904 56.916 0 44 28 3 0 0 0 0.58395 1 10755 10755 28.495 8.08 1 2085300 41696 2454 27713 27730 41125 41125 0.019439472296653548 SILERSENV 9 Unmodified _SILERSENV_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6972045898438 2 523.77747 1045.54039 -0.23313 -0.00012211 0.46174 0.00024185 0.22861 0.00011974 523.7776518708885 59.086 0.60109 56.176 55.857 56.458 -2.9105 30 16 2 0 0 0 0.24263 1 11376 11376 34.932 2.1464 1 2906000 41697 2454 27713 27730 41126 41126 0.019439472296653548 SILERSENV 9 Unmodified _SILERSENV_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6903076171875 2 523.77747 1045.54039 0.17206 9.0122E-05 -0.33068 -0.0001732 -0.15862 -8.3082E-05 523.777345005697 59.407 0.658 56.184 55.912 56.57 -3.2237 35 18 3 0 0 0 0.39339 1 11069 11069 36.506 6.6656 1 3141900 41698 2454 27713 27730 41127 41127 0.019439472296653548 SILERSENV 9 Unmodified _SILERSENV_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.77747 1045.54039 -0.23313 -0.00012211 0.46174 0.00024185 0.22861 0.00011974 523.7776518708885 59.086 0.60109 56.176 55.857 56.458 -2.9105 -0.0057425 0.00038248 NaN 34.932 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2906000 41699 2454 27713 27730 0.019439472296653548 SILERSENV 9 Unmodified _SILERSENV_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.77747 1045.54039 -0.45993 -0.0002409 0.49144 0.00025741 0.031515 1.6507E-05 523.7777096416198 59.476 0.55997 56.162 55.854 56.414 -3.3139 -0.019152 0.00041359 NaN 34.932 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3384400 41700 2454 27713 27730 0.019439472296653548 SILFVGWLIR 10 Unmodified _SILFVGWLIR_ 0 0 0 REV__nc|ENSG00000171671|Q9BTD1|SHANK2-AS3 REV__nc|ENSG00000171671|Q9BTD1|SHANK2-AS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 402.232666015625 3 401.913131 1202.71756 0.12527 5.0349E-05 -0.056828 -2.284E-05 0.068446 2.7509E-05 401.9130737318387 62.559 0.62963 59.187 58.882 59.511 -3.3723 39 17 3 0 0 0 0.5179 1 11641 11641 0.013265 0 1 9550900 + 41701 24168 27714 27731 41128 41128 0.12431447570452292 SILICLYESY 10 Unmodified _SILICLYESY_ 0 0 0 TLR10|p.A753Hfs*28|1|0.31|ENSG00000174123|chr4:38773335-38773335|T/-|frameshift_variant;ENSG00000174123|ENST00000308973|TLR10 TLR10|p.A753Hfs*28|1|0.31|ENSG00000174123|chr4:38773335-38773335|T/-|frameshift_variant TLR10|p.A753Hfs*28|1|0.31|ENSG00000174123|chr4:38773335-38773335|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2997436523438 2 602.301933 1202.58931 NaN NaN NaN NaN NaN NaN NaN 92.427 1 88.333 87.833 88.833 -4.0946 0 0 0 0.22576 1 17608 17608 14.838 1.7958 1 41702 6329 27715 27732 41129 41129 -0.003879005255839729 SILIRRSTP 9 Unmodified _SILIRRSTP_ 0 0 0 REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF REV__ENST00000488315.5_1_7:149570449-149570881:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.273681640625 2 521.822015 1041.62948 -1.3202 -0.00068892 1.1981 0.0006252 -0.12211 -6.3722E-05 521.8226507425527 14.992 0.41638 13.77 13.615 14.032 -1.2219 28 11 4 0 0 0 0.63318 1 2049 2049 0.073264 0 1 17155000 + 41703 22273 27716 27733 41130 41130 0.11032826979840138 SILKITKVKF 10 Unmodified _SILKITKVKF_ 0 0 0 ENSG00000138615|ENST00000261883|CILP ENSG00000138615|ENST00000261883|CILP ENSG00000138615|ENST00000261883|CILP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 588.4012451171875 2 588.889367 1175.76418 NaN NaN NaN NaN NaN NaN NaN 166.76 1 166.76 166.26 167.26 0 0 0 0 0.22588 1 34008 34008 1.6526 0 1 41704 4187 27717 27734 41131 41131 0.18332887401720654 SILKKILF 8 Unmodified _SILKKILF_ 0 0 0 REV__ENST00000552699.5_1_12:50156792-50156852:+|nuORF REV__ENST00000552699.5_1_12:50156792-50156852:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2358093261719 2 481.325871 960.637189 NaN NaN NaN NaN NaN NaN NaN 131.78 1 127.14 126.64 127.64 -4.6399 0 0 0 0.21486 1 25969 25969 5.7604 0 1 + 41705 22949 27718 27735 41132 41132 0.15529586247430416 SILLLLFLY 9 Unmodified _SILLLLFLY_ 0 0 0 ENSG00000169359|ENST00000643144|SLC33A1 ENSG00000169359|ENST00000643144|SLC33A1 ENSG00000169359|ENST00000643144|SLC33A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7844848632812 2 547.846636 1093.67872 NaN NaN NaN NaN NaN NaN NaN 128.31 1 123.57 123.07 124.07 -4.7408 0 0 0 0.23508 1 24687 24687 4.756 0 1 41706 5979 27719 27736 41133 41133 0.13562722216079237 SILNAEDSL 9 Unmodified _SILNAEDSL_ 0 0 0 nc|ENSG00000164542|Q8NCT3|MATCAP2;nc|ENSG00000164542|Q8NCT3-4|MATCAP2;ENST00000493327.1_1_7:36396426-36406798:-|nuORF;nc|ENSG00000164542|Q8NCT3-3|MATCAP2;nc|ENSG00000164542|Q8NCT3-2|MATCAP2;ENSG00000164542|ENST00000440378|MATCAP2 nc|ENSG00000164542|Q8NCT3|MATCAP2 nc|ENSG00000164542|Q8NCT3|MATCAP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2444152832031 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 116.53 1 112.05 111.55 112.55 -4.486 0 0 0 0.19684 1 22975 22975 0.073264 0 1 41707 12425 27720 27737 41134 41134 -0.0054283292729451205 SILREAAAIHV 11 Unmodified _SILREAAAIHV_ 0 0 0 nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS nc|ENSG00000136877|Q05932-3|FPGS nc|ENSG00000136877|Q05932-3|FPGS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2726440429688 2 590.345855 1178.67716 NaN NaN NaN NaN NaN NaN NaN 152.06 1 146.82 146.32 147.32 -5.2365 0 0 0 0.23087 1 29479 29479 7.609 0.88579 1 41708 4048 27721 27738 41135 41135 0.09496481180008232 SILRYSKRE 9 Unmodified _SILRYSKRE_ 0 0 0 ENST00000524283.5_1_8:112016934-112017871:-|nuORF ENST00000524283.5_1_8:112016934-112017871:-|nuORF ENST00000524283.5_1_8:112016934-112017871:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3126220703125 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 122.02 1 117.34 116.84 117.84 -4.6873 0 0 0 0.23508 1 23426 23426 10.824 2.0785 1 41709 10879 27722 27739 41136 41136 0.0765590814596635 SILSEQLNAL 10 Unmodified _SILSEQLNAL_ 0 0 0 REV__PDE3A|p.F1004L|1|0.02|ENSG00000172572|chr12:20654033-20654033|C/A|missense_variant REV__PDE3A|p.F1004L|1|0.02|ENSG00000172572|chr12:20654033-20654033|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.779541015625 2 544.303321 1086.59209 0.3704 0.00020161 0.73875 0.00040211 1.1092 0.00060372 544.3035894541246 156.74 0.74847 151.95 151.53 152.27 -4.7885 25 20 2 0 0 0 0.75233 1 31163 31163 17.113 0 1 1220100 + 41710 24450 27723 27740 41137 41137 0.05225690923566617 SILYVCLNAR 10 Unmodified _SILYVCLNAR_ 0 0 0 REV__RALGAPA2|p.Y614_I615insL|1|0.09|ENSG00000188559|chr20:20605370-20605371|-/TAA|inframe_insertion REV__RALGAPA2|p.Y614_I615insL|1|0.09|ENSG00000188559|chr20:20605370-20605371|-/TAA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3204956054688 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 161.41 1 161.41 160.91 161.91 0 0 0 0 0.22588 1 32421 32421 12.241 0.60036 1 + 41711 24545 27724 27741 41138 41138 0.04758047525274378 SIMDILNI 8 Unmodified _SIMDILNI_ 0 0 0 MS4A1|p.I143M|1|0.16|ENSG00000156738|chr11:60466013-60466013|T/G|missense_variant;ENSG00000156738|ENST00000345732|MS4A1 MS4A1|p.I143M|1|0.16|ENSG00000156738|chr11:60466013-60466013|T/G|missense_variant MS4A1|p.I143M|1|0.16|ENSG00000156738|chr11:60466013-60466013|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2341613769531 2 459.751879 917.489204 NaN NaN NaN NaN NaN NaN NaN 146.22 1 146.22 145.72 146.72 0 0 0 0 0.018607 1 29233 29233 63.563 0 1 41712 5102 27725 27742 41139 41139 0.027159069312460815 SIMFMQSL 8 Unmodified _SIMFMQSL_ 0 0 0 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7313537597656 2 478.732632 955.45071 NaN NaN NaN NaN NaN NaN NaN 98.98 1 94.711 94.211 95.211 -4.2692 0 0 0 0.22676 1 18923 18923 0.68139 0 1 41713 4133 27726 27743 41140 41140 -0.028797219749094438 SIMFMQSL 8 Unmodified _SIMFMQSL_ 0 0 0 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7306213378906 2 478.732632 955.45071 NaN NaN NaN NaN NaN NaN NaN 98.863 1 94.907 94.407 95.407 -3.9564 0 0 0 0.20294 1 18977 18977 23.148 0 1 41714 4133 27726 27743 41141 41141 -0.028797219749094438 SIMKKSEFL 9 Unmodified _SIMKKSEFL_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2764282226562 2 541.79936 1081.58417 0.46205 0.00025034 -0.031932 -1.7301E-05 0.43012 0.00023304 542.3009386014515 75.008 0.59866 75.008 74.745 75.344 0 22 16 2 0 0 0 0.38759 1 14574 14574 17.113 8.9574 1 3154000 41715 4752 27727 27744 41142 41142 0.046638404024406555 SIMKKSEFL 9 Unmodified _SIMKKSEFL_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2625732421875 2 541.79936 1081.58417 0.027886 1.5109E-05 -0.11949 -6.4738E-05 -0.0916 -4.9629E-05 541.7993271108451 78.536 0.60339 74.731 74.452 75.055 -3.8048 29 16 2 0 0 0 0.45788 1 14911 14911 39.95 19.496 1 2121100 41716 4752 27727 27744 41143 41143 0.046638404024406555 SIMKKSEFL 9 Unmodified _SIMKKSEFL_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2625732421875 2 541.79936 1081.58417 0.084836 4.5964E-05 -0.50126 -0.00027158 -0.41642 -0.00022562 541.7994551781317 78.437 0.59693 74.778 74.516 75.113 -3.6588 29 16 2 0 0 0 0.60663 1 14920 14920 26.268 4.7312 1 1308200 41717 4752 27727 27744 41144 41144 0.046638404024406555 SIMPSILASF 10 Unmodified _SIMPSILASF_ 0 0 0 REV__PAPOLB|p.K446Sfs*28|1|0.38|ENSG00000218823|chr7:4860474-4860474|T/-|frameshift_variant REV__PAPOLB|p.K446Sfs*28|1|0.38|ENSG00000218823|chr7:4860474-4860474|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2850341796875 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 141.97 1 141.97 141.47 142.47 0 0 0 0 0.22588 1 28301 28301 10.074 1.4806 1 + 41718 24432 27728 27745 41145 41145 0.02792151511107477 SIMWIAMF 8 Unmodified _SIMWIAMF_ 0 0 0 ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1 ENST00000434116.6_1_15:65916409-65944223:+|nuORF ENST00000434116.6_1_15:65916409-65944223:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.9992370605469 3 333.499453 997.476531 0.059637 1.9889E-05 1.0544 0.00035163 1.114 0.00037152 333.49971993754497 54.103 0.24258 50.968 50.801 51.044 -3.1352 11 6 2 0 0 0 1.0265 1 9939 9939 1.6526 0 1 5178300 41719 1500 27729 27746 41146 41146 -0.022308277326374082 SIMWIAMF 8 Unmodified _SIMWIAMF_ 0 0 0 ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1 ENST00000434116.6_1_15:65916409-65944223:+|nuORF ENST00000434116.6_1_15:65916409-65944223:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 333.499453 997.476531 -0.28454 -9.4893E-05 0.95702 0.00031917 0.67248 0.00022427 333.4999026409368 51.218 0.17308 51.218 51.131 51.304 0 0.14565 -0.00036676 NaN 1.6526 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 4113000 41720 1500 27729 27746 -0.022308277326374082 SIMWIAMF 8 Unmodified _SIMWIAMF_ 0 0 0 ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1 ENST00000434116.6_1_15:65916409-65944223:+|nuORF ENST00000434116.6_1_15:65916409-65944223:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 333.499453 997.476531 -0.50657 -0.00016894 1.6484 0.00054973 1.1418 0.00038079 333.49990300190103 53.914 0.27869 51.03 50.803 51.082 -2.8837 -0.041775 0.00032493 NaN 1.6526 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 11615000 41721 1500 27729 27746 -0.022308277326374082 SINDKIIEL 9 Unmodified _SINDKIIEL_ 0 0 0 nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;nc|ENSG00000198911|Q12772-2|SREBF2;ENSG00000198911|ENST00000361204|SREBF2 nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000198911|Q12772-2|SREBF2 nc|ENSG00000072310|P36956-3|SREBF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2799682617188 2 522.800414 1043.58628 -0.16897 -8.834E-05 0.73234 0.00038287 0.56336 0.00029453 522.8006643128302 129.13 0.76141 124.5 124.12 124.88 -4.6292 59 21 4 0 0 0 0.0044036 1 25449 25449 110.55 21.599 1 7369100 41722 1463;7522 27730 27747 41147 41147 0.06622592411895312 SINDKIIEL 9 Unmodified _SINDKIIEL_ 0 0 0 nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;nc|ENSG00000198911|Q12772-2|SREBF2;ENSG00000198911|ENST00000361204|SREBF2 nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000198911|Q12772-2|SREBF2 nc|ENSG00000072310|P36956-3|SREBF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2732543945312 2 522.800414 1043.58628 -0.56865 -0.00029729 0.64393 0.00033665 0.075273 3.9353E-05 522.8007467725538 129.48 0.68861 124.66 124.27 124.96 -4.817 47 19 3 0 0 0 0.035659 1 24850 24850 74.2 7.743 1 6627600 41723 1463;7522 27730 27747 41148 41148 0.06622592411895312 SINDKIIEL 9 Unmodified _SINDKIIEL_ 0 0 0 nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;nc|ENSG00000198911|Q12772-2|SREBF2;ENSG00000198911|ENST00000361204|SREBF2 nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000198911|Q12772-2|SREBF2 nc|ENSG00000072310|P36956-3|SREBF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 522.800414 1043.58628 0.19035 9.9517E-05 1.7435 0.00091149 1.9338 0.001011 523.3014889741846 124.69 0.28196 124.69 124.51 124.79 0 0.075849 0.0011053 NaN 110.55 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2367300 41724 1463;7522 27730 27747 0.06622592411895312 SINEVKSFY 9 Unmodified _SINEVKSFY_ 0 0 0 REV__tr|U7T629|U7T629_FUSNUBaseplateproteinJ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00078PE=4SV=1 REV__tr|U7T629|U7T629_FUSNUBaseplateproteinJ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00078PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7776489257812 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 160.44 1 155.64 155.14 156.14 -4.7952 0 0 0 0.19704 1 31905 31905 7.4771 0 1 + 41725 25436 27731 27748 41149 41149 -2.2671392343909247E-05 SINEVKSFY 9 Unmodified _SINEVKSFY_ 0 0 0 REV__tr|U7T629|U7T629_FUSNUBaseplateproteinJ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00078PE=4SV=1 REV__tr|U7T629|U7T629_FUSNUBaseplateproteinJ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00078PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7783203125 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 169.27 1 164.39 163.89 164.89 -4.873 0 0 0 0.18966 1 33421 33421 0.12781 0 1 + 41726 25436 27731 27748 41150 41150 -2.2671392343909247E-05 SINHLDIAP 9 Unmodified _SINHLDIAP_ 0 0 0 SLC17A5|p.S446Kfs*5|1|0.1|ENSG00000119899|chr6:73600364-73600365|-/T|frameshift_variant;ENSG00000119899|ENST00000355773|SLC17A5 SLC17A5|p.S446Kfs*5|1|0.1|ENSG00000119899|chr6:73600364-73600365|-/T|frameshift_variant SLC17A5|p.S446Kfs*5|1|0.1|ENSG00000119899|chr6:73600364-73600365|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26397705078125 2 490.263999 978.513445 0.0073845 3.6203E-06 0.13078 6.4117E-05 0.13816 6.7737E-05 490.264027526858 56.438 1.1201 56.438 55.973 57.093 0 97 31 4 0 0 0 0.36931 1 10777 10777 27.629 1.3607 1 20526000 41727 3105 27732 27749 41151 41151 0.023328834091216777 SINHLDIAP 9 Unmodified _SINHLDIAP_ 0 0 0 SLC17A5|p.S446Kfs*5|1|0.1|ENSG00000119899|chr6:73600364-73600365|-/T|frameshift_variant;ENSG00000119899|ENST00000355773|SLC17A5 SLC17A5|p.S446Kfs*5|1|0.1|ENSG00000119899|chr6:73600364-73600365|-/T|frameshift_variant SLC17A5|p.S446Kfs*5|1|0.1|ENSG00000119899|chr6:73600364-73600365|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2638854980469 2 490.263999 978.513445 0.064146 3.1448E-05 0.10466 5.1312E-05 0.16881 8.2761E-05 490.2640316435626 59.279 1.7152 56.368 55.784 57.5 -2.9105 129 48 4 0 0 0 0.16619 1 11443 11443 41.84 14.211 1 42586000 41728 3105 27732 27749 41152 41152 0.023328834091216777 SINHLDIAP 9 Unmodified _SINHLDIAP_ 0 0 0 SLC17A5|p.S446Kfs*5|1|0.1|ENSG00000119899|chr6:73600364-73600365|-/T|frameshift_variant;ENSG00000119899|ENST00000355773|SLC17A5 SLC17A5|p.S446Kfs*5|1|0.1|ENSG00000119899|chr6:73600364-73600365|-/T|frameshift_variant SLC17A5|p.S446Kfs*5|1|0.1|ENSG00000119899|chr6:73600364-73600365|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2639465332031 2 490.263999 978.513445 0.17497 8.5784E-05 0.35871 0.00017586 0.53368 0.00026164 490.26396477223466 59.697 1.4825 56.384 55.742 57.224 -3.3139 148 41 6 0 0 0 0.16619 1 11140 11140 41.84 9.5341 1 37594000 41729 3105 27732 27749 41153 41153 0.023328834091216777 SINHLDIAP 9 Unmodified _SINHLDIAP_ 0 0 0 SLC17A5|p.S446Kfs*5|1|0.1|ENSG00000119899|chr6:73600364-73600365|-/T|frameshift_variant;ENSG00000119899|ENST00000355773|SLC17A5 SLC17A5|p.S446Kfs*5|1|0.1|ENSG00000119899|chr6:73600364-73600365|-/T|frameshift_variant SLC17A5|p.S446Kfs*5|1|0.1|ENSG00000119899|chr6:73600364-73600365|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26397705078125 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 0.16619 1 11183 11183 41.84 5.7126 1 39769000 41730 3105 27732 27749 41154 41154 0.023328834091216777 SINKGGLNYL 10 Unmodified _SINKGGLNYL_ 0 0 0 REV__CON__Q8VED5 REV__CON__Q8VED5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112.91 1 112.91 112.41 113.41 0 0 0 0 0.22588 1 22204 22204 0.69767 0 1 + + 41731 13557 27733 27750 41155 41155 0.0461712798901317 SINPQGITP 9 Unmodified _SINPQGITP_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2554931640625 2 463.750724 925.486896 0.18093 8.3907E-05 -0.4435 -0.00020567 -0.26257 -0.00012177 463.7505252073514 65.158 1.6781 61.7 61.192 62.87 -3.4581 134 47 5 0 0 0 0.19171 1 12140 12140 38.176 3.7738 1 210120000 + 41732 17662 27734 27751 41156 41156 0.021171945178025453 SINQESVP 8 Unmodified _SINQESVP_ 0 0 0 REV__ENST00000475937.5_1_3:71542611-71592656:-|nuORF REV__ENST00000475937.5_1_3:71542611-71592656:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.228759765625 2 437.219257 872.423961 0.14514 6.3457E-05 -1.0133 -0.00044304 -0.86818 -0.00037959 437.2185900101604 63.901 0.35029 60.486 60.354 60.704 -3.4158 11 9 2 0 0 0 0.89147 1 11985 11985 0.12286 0 1 415990 + 41733 22038 27735 27752 41157 41157 -0.017353712702401936 SINQVLLAW 9 Unmodified _SINQVLLAW_ 0 0 0 ENSG00000181017|ENST00000641377|OR56B2P;nc|ENSG00000181017|Q8NGI1|OR56B2P ENSG00000181017|ENST00000641377|OR56B2P ENSG00000181017|ENST00000641377|OR56B2P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2609252929688 2 522.297842 1042.58113 -0.21037 -0.00010988 -3.5065 -0.0018314 -3.7168 -0.0019413 522.2954387328214 135.63 0.13882 130.99 130.9 131.04 -4.6399 5 3 2 0 0 0 0.59384 1 26752 26752 13.508 3.3573 1 2004600 41734 6706 27736 27753 41158 41158 0.06154333339964069 SINYPSIVS 9 Unmodified _SINYPSIVS_ 0 0 0 REV__ENSG00000112320|ENST00000317357|SOBP REV__ENSG00000112320|ENST00000317357|SOBP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2588195800781 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 111.21 1 106.72 106.22 107.22 -4.4915 0 0 0 0.23508 1 21344 21344 13.042 1.4022 1 + 41735 15293 27737 27754 41159 41159 0.012100613149982564 SIPAWGSR 8 Unmodified _SIPAWGSR_ 0 0 0 nc|ENSG00000267106|K7EIQ3-2|ZNF561-AS1 nc|ENSG00000267106|K7EIQ3-2|ZNF561-AS1 nc|ENSG00000267106|K7EIQ3-2|ZNF561-AS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23114013671875 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 147.43 1 142.27 141.77 142.77 -5.1557 0 0 0 0.22657 1 28528 28528 0.68139 0.42991 1 41736 12637 27738 27755 41160 41160 0.009123624117705731 SIPDFKYPV 9 Unmodified _SIPDFKYPV_ 0 0 0 ENSG00000166845|ENST00000620105|C18orf54 ENSG00000166845|ENST00000620105|C18orf54 ENSG00000166845|ENST00000620105|C18orf54 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2853393554688 2 533.2844 1064.55425 0.30786 0.00016418 1.0848 0.00057849 1.3926 0.00074267 533.7867186168598 139.15 0.17256 134.3 134.18 134.35 -4.8492 6 4 2 0 0 0 0.65387 1 26832 26832 9.3831 0.63772 1 1227800 41737 5753 27739 27756 41161 41161 0.024552247287601858 SIPEHHPLN 9 Unmodified _SIPEHHPLN_ 0 0 0 REV__TLX2|p.A98Rfs*16|2|0.18|ENSG00000115297|chr2:74515092-74515092|G/-|frameshift_variant REV__TLX2|p.A98Rfs*16|2|0.18|ENSG00000115297|chr2:74515092-74515092|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26611328125 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 116.82 1 112.34 111.84 112.84 -4.486 0 0 0 0.17788 1 23032 23032 2.6312 1.4164 1 + 41738 15419 27740 27757 41162 41162 3.4016406743830885E-05 SIPKHSLLNI 10 Unmodified _SIPKHSLLNI_ 0 0 0 REV__tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1 REV__tr|U7T8Q4|U7T8Q4_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00130PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 561.32470703125 2 561.337498 1120.66044 0.013066 7.3342E-06 0.6933 0.00038917 0.70636 0.00039651 561.8407989968623 144.22 0.20679 139.55 139.4 139.6 -4.6694 6 5 2 0 0 0 0.84281 1 28524 28524 5.7319 2.1354 1 1625200 + 41739 25474 27741 27758 41163 41163 0.10493980294063476 SIPPYLSPSQD 11 Unmodified _SIPPYLSPSQD_ 0 0 0 nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1 nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3008422851562 2 602.298236 1202.58192 NaN NaN NaN NaN NaN NaN NaN 135.23 1 130.34 129.84 130.84 -4.8951 0 0 0 0.23429 1 25976 25976 4.897 0.95262 1 41740 2460 27742 27759 41164 41164 -0.011269168016497133 SIPRVFHPL 9 Unmodified _SIPRVFHPL_ 0 0 0 ENST00000575022.1_1_17:6699788-6699974:+|nuORF ENST00000575022.1_1_17:6699788-6699974:+|nuORF ENST00000575022.1_1_17:6699788-6699974:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2676391601562 2 533.313826 1064.6131 NaN NaN NaN NaN NaN NaN NaN 140.8 1 135.81 135.31 136.31 -4.9877 0 0 0 0.1966 1 27104 27104 0.40827 0 1 41741 11448 27743 27760 41165 41165 0.08337745813742004 SIQEELQQL 9 Unmodified _SIQEELQQL_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7936401367188 2 544.285128 1086.5557 0.33466 0.00018215 1.9848 0.0010803 2.3195 0.0012625 544.2865863569402 136.13 1.1185 136.13 135.54 136.66 0 42 31 2 0 0 0 0.71527 1 26923 26923 19.257 2.3147 1 3194300 41742 6567 27744 27761 41166 41166 0.015888140268771167 SIQEYQYAQM 10 Unmodified _SIQEYQYAQM_ 0 0 0 REV__ENSG00000109111|ENST00000314616|SUPT6H REV__ENSG00000109111|ENST00000314616|SUPT6H MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.779296875 2 630.781896 1259.54924 NaN NaN NaN NaN NaN NaN NaN 145.01 1 140.34 139.84 140.84 -4.6694 0 0 0 0.22588 1 28733 28733 6.7232 0.99131 1 + 41743 15153 27745 27762 41167 41167 -0.07015447196181412 SIQFKTPIYY 10 Unmodified _SIQFKTPIYY_ 0 0 0 BCAS3|p.D189Y|1|0.33|ENSG00000141376|chr17:60868664-60868664|G/T|missense_variant BCAS3|p.D189Y|1|0.33|ENSG00000141376|chr17:60868664-60868664|G/T|missense_variant BCAS3|p.D189Y|1|0.33|ENSG00000141376|chr17:60868664-60868664|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7575073242188 2 630.337164 1258.65977 0.39946 0.00025179 -2.184 -0.0013766 -1.7845 -0.0011248 630.3346265602041 125.89 0.13953 125.89 125.79 125.93 0 6 3 2 0 0 0 0.88533 1 24841 24841 8.7454 0.58988 1 1980000 41744 305 27746 27763 41168 41168 0.04079140854378238 SIQGHNDYI 9 Unmodified _SIQGHNDYI_ 0 0 0 nc|ENSG00000140009|Q92731-3|ESR2;nc|ENSG00000140009|Q92731-8|ESR2;nc|ENSG00000140009|Q92731-7|ESR2;nc|ENSG00000140009|Q92731-6|ESR2;nc|ENSG00000140009|Q92731-9|ESR2;nc|ENSG00000140009|Q92731-5|ESR2;nc|ENSG00000140009|Q92731-2|ESR2;nc|ENSG00000140009|Q92731-4|ESR2;ENSG00000140009|ENST00000341099|ESR2 nc|ENSG00000140009|Q92731-3|ESR2 nc|ENSG00000140009|Q92731-3|ESR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.68701171875 2 523.748713 1045.48287 NaN NaN NaN NaN NaN NaN NaN 133.26 1 128.45 127.95 128.95 -4.8037 0 0 0 0.19679 1 25648 25648 0.029283 0 1 41745 4277 27747 27764 41169 41169 -0.038048949759058814 SIQIWHYF 8 Unmodified _SIQIWHYF_ 0 0 0 KIAA0825|p.M634I|1|0.3|ENSG00000185261|chr5:94465030-94465030|C/A|missense_variant KIAA0825|p.M634I|1|0.3|ENSG00000185261|chr5:94465030-94465030|C/A|missense_variant KIAA0825|p.M634I|1|0.3|ENSG00000185261|chr5:94465030-94465030|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.788330078125 2 547.276909 1092.53927 0.37769 0.0002067 1.3161 0.00072025 1.6938 0.00092695 547.2771279611956 161.15 0.10303 156.36 156.28 156.39 -4.7952 4 2 2 0 0 0 0.74818 1 32037 32037 7.2892 1.0834 1 837440 41746 11993 27748 27765 41170 41170 -0.0033022234858890442 SIQKVPGCP 9 Unmodified _SIQKVPGCP_ 0 0 0 ENST00000377954.3_1_11:62437223-62438723:-|nuORF;ENST00000415855.6_1_11:62437223-62439062:-|nuORF;ENST00000431002.6_1_11:62437223-62437496:-|nuORF;ENST00000354588.7_1_11:62437223-62439219:-|nuORF ENST00000377954.3_1_11:62437223-62438723:-|nuORF ENST00000377954.3_1_11:62437223-62438723:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698913574219 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 50.078 1 50.078 49.578 50.578 0 0 0 0 0.23508 1 9477 9477 7.609 0 1 41747 8946 27749 27766 41171 41171 0.018144425083505666 SIQMSEISVT 10 Unmodified _SIQMSEISVT_ 0 0 0 ENSG00000102239|ENST00000370648|BRS3 ENSG00000102239|ENST00000370648|BRS3 ENSG00000102239|ENST00000370648|BRS3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7737426757812 2 547.773539 1093.53253 NaN NaN NaN NaN NaN NaN NaN 168.96 1 168.96 168.46 169.46 0 0 0 0 0.22588 1 34650 34650 9.3831 0 1 41748 2119 27750 27767 41172 41172 -0.010499480820953977 SIQQKFDP 8 Unmodified _SIQQKFDP_ 0 0 0 REV__ENSG00000128833|ENST00000261839|MYO5C REV__ENSG00000128833|ENST00000261839|MYO5C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76727294921875 2 481.750724 961.486896 NaN NaN NaN NaN NaN NaN NaN 152.55 1 147.38 146.88 147.88 -5.1759 0 0 0 0.21171 1 29569 29569 15.847 1.0089 1 + 41749 15936 27751 27768 41173 41173 0.0046119451779986775 SIQQYSFG 8 Unmodified _SIQQYSFG_ 0 0 0 REV__ENST00000449870.5_2_19:10800918-10801068:+|nuORF REV__ENST00000449870.5_2_19:10800918-10801068:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2456970214844 2 465.2218 928.429047 0.23041 0.00010719 -0.34129 -0.00015878 -0.11089 -5.1588E-05 465.22153825795004 119.52 0.98503 115 114.48 115.47 -4.5221 42 27 2 0 0 0 0.88646 1 23657 23657 0.063987 0 1 2169200 + 41750 21790 27752 27769 41174 41174 -0.0380306740761398 SIQRHCELR 9 Unmodified _SIQRHCELR_ 0 0 0 REV__nc|ENSG00000101977|P10911|MCF2 REV__nc|ENSG00000101977|P10911|MCF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2073669433594 3 381.201346 1140.58221 NaN NaN NaN NaN NaN NaN NaN 82.212 1 78.655 78.155 79.155 -3.557 0 0 0 0.23508 1 16065 16065 7.1017 2.9122 1 + 41751 14813 27753 27770 41175 41175 0.017542244371725246 SIQSERLLEQ 10 Unmodified _SIQSERLLEQ_ 0 0 0 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2950439453125 2 601.822409 1201.63027 1.1734 0.00070618 -3.3065 -0.0019899 -2.1331 -0.0012837 601.8208366804257 159.23 0.3584 154.43 154.23 154.59 -4.7952 12 9 2 0 0 0 0.88533 1 31623 31623 5.2969 3.6443 1 7905400 + 41752 15174 27754 27771 41176 41176 0.03751576838226356 SIQSSKLAK 9 Unmodified _SIQSSKLAK_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2543029785156 2 481.287474 960.560395 NaN NaN NaN NaN NaN NaN NaN 90.864 1 86.769 86.269 87.269 -4.0946 0 0 0 0.22962 1 17311 17311 14.838 0 1 + 41753 19439 27755 27772 41177 41177 0.07853742960276122 SIQTMEPD 8 Unmodified _SIQTMEPD_ 0 0 0 ENSG00000125772|ENST00000379019|GPCPD1 ENSG00000125772|ENST00000379019|GPCPD1 ENSG00000125772|ENST00000379019|GPCPD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2413635253906 2 460.705125 919.395698 0.41005 0.00018891 0.20391 9.3941E-05 0.61396 0.00028285 460.70518254236976 75.763 1.3099 75.763 75.24 76.55 0 63 37 2 0 0 0 0.58903 1 14698 14698 16.942 0 1 5630000 41754 3385 27756 27773 41178 41178 -0.06722437241842272 SIRDAYKAY 9 Unmodified _SIRDAYKAY_ 0 0 0 REV__ENSG00000155636|ENST00000286070|RBM45 REV__ENSG00000155636|ENST00000286070|RBM45 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78173828125 2 543.782556 1085.55056 0.33021 0.00017956 -0.23398 -0.00012723 0.096232 5.2329E-05 543.7823041912576 85.759 0.57722 85.759 85.394 85.971 0 24 15 2 0 0 0 0.37087 1 16685 16685 0.12781 0.054551 1 2902800 + 41755 17220 27757 27774 41179 41179 0.011205549548776617 SIRDAYKAY 9 Unmodified _SIRDAYKAY_ 0 0 0 REV__ENSG00000155636|ENST00000286070|RBM45 REV__ENSG00000155636|ENST00000286070|RBM45 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78271484375 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 66.238 1 66.238 65.738 66.738 0 0 0 0 0.19679 1 12789 12789 0.12781 0.11455 1 + 41756 17220 27757 27774 41180 41180 0.011205549548776617 SIRDAYKAY 9 Unmodified _SIRDAYKAY_ 0 0 0 REV__ENSG00000155636|ENST00000286070|RBM45 REV__ENSG00000155636|ENST00000286070|RBM45 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7823486328125 2 543.782556 1085.55056 0.15675 8.5235E-05 -0.11364 -6.1794E-05 0.043109 2.3442E-05 543.7825115047583 90.34 0.70782 86.48 86.116 86.824 -3.8595 52 19 3 0 0 0 0.50943 1 17622 17622 0.37959 0 1 6239100 + 41757 17220 27757 27774 41181 41181 0.011205549548776617 SIRDAYKAY 9 Unmodified _SIRDAYKAY_ 0 0 0 REV__ENSG00000155636|ENST00000286070|RBM45 REV__ENSG00000155636|ENST00000286070|RBM45 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7824096679688 2 543.782556 1085.55056 0.36768 0.00019994 -0.20694 -0.00011253 0.16074 8.7405E-05 543.782323939369 90.508 0.77071 86.463 86.021 86.792 -4.0443 48 21 3 0 0 0 0.41081 1 17283 17283 0.40827 0.14288 1 4689600 + 41758 17220 27757 27774 41182 41182 0.011205549548776617 SIRDAYKAY 9 Unmodified _SIRDAYKAY_ 0 0 0 REV__ENSG00000155636|ENST00000286070|RBM45 REV__ENSG00000155636|ENST00000286070|RBM45 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7825927734375 2 543.782556 1085.55056 -0.11617 -6.3173E-05 1.3246 0.00072031 1.2085 0.00065714 543.7832938090773 108.74 0.76752 104.29 103.98 104.75 -4.4518 29 21 2 0 0 0 0.30056 1 20920 20920 2.8827 2.7548 1 2102700 + 41759 17220 27757 27774 41183 41183 0.011205549548776617 SIRDAYKAY 9 Unmodified _SIRDAYKAY_ 0 0 0 REV__ENSG00000155636|ENST00000286070|RBM45 REV__ENSG00000155636|ENST00000286070|RBM45 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7828369140625 2 543.782556 1085.55056 0.76175 0.00041423 0.0010956 5.9574E-07 0.76285 0.00041482 543.7828641637442 108.51 0.58664 104.37 104.05 104.64 -4.135 24 16 2 0 0 0 0.39168 1 20894 20894 0.40827 0.20094 1 1430300 + 41760 17220 27757 27774 41184 41184 0.011205549548776617 SIREPNLFR 9 Unmodified _SIREPNLFR_ 0 0 0 REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 566.3984375 2 566.317097 1130.61964 -0.051918 -2.9402E-05 1.4067 0.00079662 1.3547 0.00076721 566.3162385324819 143.98 0.30995 139.31 139.19 139.5 -4.6694 11 8 2 0 0 0 0.85913 1 28493 28493 10.074 4.777 1 3430700 + 41761 24988 27758 27775 41185 41185 0.05955638974455724 SIRGFVLQY 9 Unmodified _SIRGFVLQY_ 0 0 0 DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant;DSCAML1|p.P2046Qfs*45|1|0.5|ENSG00000177103|chr11:117428533-117428533|G/-|frameshift_variant;ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1 DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2651977539062 2 541.803291 1081.59203 -0.0060482 -3.2769E-06 0.19168 0.00010385 0.18563 0.00010058 541.8032037307081 111.88 0.83522 107.39 107.03 107.87 -4.4915 40 23 2 0 0 0 0.79204 1 21432 21432 7.2892 4.9865 1 6069600 41762 893 27759 27776 41186 41186 0.054497357142281544 SIRHKFHIN 9 Unmodified _SIRHKFHIN_ 0 0 0 FREM1|p.P511H|1|0.43|ENSG00000164946|chr9:14842522-14842522|G/T|missense_variant FREM1|p.P511H|1|0.43|ENSG00000164946|chr9:14842522-14842522|G/T|missense_variant FREM1|p.P511H|1|0.43|ENSG00000164946|chr9:14842522-14842522|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3190307617188 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 163.26 1 158.22 157.72 158.72 -5.0446 0 0 0 0.23508 1 31761 31761 10.074 0 1 41763 11825 27760 27777 41187 41187 0.06666764931219404 SIRIQTPE 8 Unmodified _SIRIQTPE_ 0 0 0 MIA3|p.K835R|1|0.33|ENSG00000154305|chr1:222629724-222629724|A/G|missense_variant MIA3|p.K835R|1|0.33|ENSG00000154305|chr1:222629724-222629724|A/G|missense_variant MIA3|p.K835R|1|0.33|ENSG00000154305|chr1:222629724-222629724|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1970520019531 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 30.785 1 30.785 30.285 31.285 0 0 0 0 0.21486 1 5543 5543 0.45834 0 1 41764 12144 27761 27778 41188 41188 0.03988883409124355 SIRKWREEQRK 11 Unmodified _SIRKWREEQRK_ 0 0 0 nc|ENSG00000175416|P09497-2|CLTB;ENSG00000175416|ENST00000310418|CLTB nc|ENSG00000175416|P09497-2|CLTB nc|ENSG00000175416|P09497-2|CLTB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.0216979980469 5 303.975875 1514.84299 -0.61877 -0.00018809 -0.098242 -2.9863E-05 -0.71701 -0.00021795 303.9759517482984 12.746 0.75952 12.746 12.478 13.238 0 30 21 2 0 0 0 0.96228 1 1782 1782 0 0 1 933020 41765 6408 27762 27779 41189 41189 0.10616507688700949 SIRLHFVH 8 Unmodified _SIRLHFVH_ 0 0 0 EML5|p.D1019Efs*4|1|0.07|ENSG00000165521|chr14:88681957-88681958|-/AATATGT|frameshift_variant;nc|ENSG00000165521|Q05BV3-2|EML5;EML5|p.G1621Efs*19|1|0.2|ENSG00000165521|chr14:88624982-88624982|C/-|frameshift_variant;EML5|p.N1682Mfs*7|1|0.04|ENSG00000165521|chr14:88621246-88621246|T/-|frameshift_variant;nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;ENST00000553281.5_1_14:89088194-89171927:-|nuORF EML5|p.D1019Efs*4|1|0.07|ENSG00000165521|chr14:88681957-88681958|-/AATATGT|frameshift_variant EML5|p.D1019Efs*4|1|0.07|ENSG00000165521|chr14:88681957-88681958|-/AATATGT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0618591308594 3 336.862771 1007.56648 -0.3741 -0.00012602 4.2118 0.0014188 3.8377 0.0012928 337.1980641313557 35.552 0.34967 33.275 33.106 33.455 -2.2766 12 9 2 0 0 0 1.0158 1 6244 6244 6.2058 2.2614 1 487470 41766 942 27763 27780 41190 41190 0.06300305982460941 SIRLSSRKRFW 11 Unmodified _SIRLSSRKRFW_ 0 0 0 ENST00000607241.1_1_2:9696514-9696625:+|nuORF ENST00000607241.1_1_2:9696514-9696625:+|nuORF ENST00000607241.1_1_2:9696514-9696625:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7235412597656 3 479.280877 1434.8208 -0.0058993 -2.8274E-06 -0.809 -0.00038774 -0.8149 -0.00039056 479.28043205398365 80.748 0.52853 76.909 76.698 77.226 -3.8392 40 14 4 0 0 0 0.96201 1 15354 15354 1.1098 0.65524 1 2101800 41767 11758 27764 27781 41191 41191 0.12078328010966288 SIRLSSRKRFW 11 Unmodified _SIRLSSRKRFW_ 0 0 0 ENST00000607241.1_1_2:9696514-9696625:+|nuORF ENST00000607241.1_1_2:9696514-9696625:+|nuORF ENST00000607241.1_1_2:9696514-9696625:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7232666015625 3 479.280877 1434.8208 -0.20858 -9.9971E-05 -0.61078 -0.00029273 -0.81936 -0.0003927 479.2804823009096 80.637 0.59605 76.949 76.582 77.178 -3.6879 38 16 3 0 0 0 0.96201 1 15372 15372 1.1098 0.65524 1 3952400 41768 11758 27764 27781 41192 41192 0.12078328010966288 SIRLSSRKRFW 11 Unmodified _SIRLSSRKRFW_ 0 0 0 ENST00000607241.1_1_2:9696514-9696625:+|nuORF ENST00000607241.1_1_2:9696514-9696625:+|nuORF ENST00000607241.1_1_2:9696514-9696625:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 479.280877 1434.8208 0.041706 1.9989E-05 -0.88566 -0.00042448 -0.84395 -0.00040449 479.2805055625009 80.465 0.63705 76.954 76.649 77.286 -3.5102 -0.031165 5.4151E-05 NaN 1.1098 37 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4164200 41769 11758 27764 27781 0.12078328010966288 SIRQVDSEL 9 Unmodified _SIRQVDSEL_ 0 0 0 REV__nc|ENSG00000002079|Q9H6N6|MYH16 REV__nc|ENSG00000002079|Q9H6N6|MYH16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7008666992188 2 523.77747 1045.54039 -0.4325 -0.00022654 0.39702 0.00020795 -0.035488 -1.8588E-05 523.7777589637374 83.485 0.42245 79.612 79.328 79.75 -3.8736 18 11 2 0 0 0 0.71913 1 15868 15868 20.415 20.415 1 1289500 + 41770 23922 27765 27782 41193 41193 0.019439472296653548 SIRQVDSEL 9 Unmodified _SIRQVDSEL_ 0 0 0 REV__nc|ENSG00000002079|Q9H6N6|MYH16 REV__nc|ENSG00000002079|Q9H6N6|MYH16 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.77747 1045.54039 -0.19082 -9.9946E-05 0.10519 5.5098E-05 -0.085625 -4.4848E-05 523.777543912776 83.149 0.42438 79.541 79.302 79.726 -3.6079 -0.05052 0.00010112 NaN 15.248 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1727500 + 41771 23922 27765 27782 0.019439472296653548 SIRQYELVVHT 11 Unmodified _SIRQYELVVHT_ 0 0 0 POR|p.I444Sfs*101|1|0.44|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant;ENSG00000127948|ENST00000461988|POR POR|p.I444Sfs*101|1|0.44|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant POR|p.I444Sfs*101|1|0.44|ENSG00000127948|chr7:75985133-75985133|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 672.9300537109375 2 672.867151 1343.71975 NaN NaN NaN NaN NaN NaN NaN 163.68 1 158.89 158.39 159.39 -4.7898 0 0 0 0.23324 1 32648 32648 5.7319 0 1 41772 3496 27766 27783 41194 41194 0.06163831517596918 SIRREREWE 9 Unmodified _SIRREREWE_ 0 0 0 REV__nc|ENSG00000154380|Q8N8S7-3|ENAH REV__nc|ENSG00000154380|Q8N8S7-3|ENAH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7715454101562 2 630.825818 1259.63708 NaN NaN NaN NaN NaN NaN NaN 151.6 1 146.37 145.87 146.87 -5.2365 0 0 0 0.23508 1 29387 29387 10.074 1.3285 1 + 41773 17179 27767 27784 41195 41195 0.0176493450946964 SIRTELQAY 9 Unmodified _SIRTELQAY_ 0 0 0 ENST00000476047.1_1_3:76483489-76483897:+|nuORF ENST00000476047.1_1_3:76483489-76483897:+|nuORF ENST00000476047.1_1_3:76483489-76483897:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2615966796875 2 540.787838 1079.56112 0.21415 0.00011581 0.60767 0.00032862 0.82182 0.00044443 540.7878739576116 75.526 0.45317 71.803 71.579 72.033 -3.7227 16 12 2 0 0 0 0.62921 1 14329 14329 13.042 2.9685 1 1040300 41774 10280 27768 27785 41196 41196 0.024525376093151863 SIRVGCLCI 9 Unmodified _SIRVGCLCI_ 0 0 0 REV__tr|U7SWZ5|U7SWZ5_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01226PE=4SV=1 REV__tr|U7SWZ5|U7SWZ5_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01226PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77911376953125 2 482.259348 962.504143 0.29547 0.00014249 -0.77703 -0.00037473 -0.48156 -0.00023224 482.2605377499746 99.817 0.84764 95.52 95.073 95.92 -4.297 57 24 3 0 0 0 0.65155 1 19065 19065 28.487 6.7402 1 3118800 + 41775 25213 27769 27786 41197 41197 0.021390755276001983 SIRVHQRRA 9 Unmodified _SIRVHQRRA_ 0 0 0 MYBPH|p.T26Nfs*37|1|0.37|ENSG00000133055|chr1:203175679-203175680|-/T|frameshift_variant MYBPH|p.T26Nfs*37|1|0.37|ENSG00000133055|chr1:203175679-203175680|-/T|frameshift_variant MYBPH|p.T26Nfs*37|1|0.37|ENSG00000133055|chr1:203175679-203175680|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 561.8338623046875 2 561.83378 1121.65301 NaN NaN NaN NaN NaN NaN NaN 11.323 1 11.323 10.823 11.823 0 0 0 0 0.23508 1 1493 1493 0.6015 0 1 41776 12181 27770 27787 41198 41198 0.09704685537030855 SIRVNPVIAL 10 Unmodified _SIRVNPVIAL_ 0 0 0 REV__ENSG00000121716|ENST00000609309|PILRB REV__ENSG00000121716|ENST00000609309|PILRB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.265380859375 2 541.340041 1080.66553 NaN NaN NaN NaN NaN NaN NaN 163.04 1 157.89 157.39 158.39 -5.1438 0 0 0 0.22588 1 31705 31705 8.7454 0.58988 1 + 41777 15664 27771 27788 41199 41199 0.1284228415670441 SISFVELTKK 10 Unmodified _SISFVELTKK_ 0 0 0 tr|U7STJ5|U7STJ5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01507PE=3SV=1 tr|U7STJ5|U7STJ5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01507PE=3SV=1 tr|U7STJ5|U7STJ5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01507PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3391723632812 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 111.88 1 107.65 107.15 108.15 -4.2289 0 0 0 0.17827 1 21537 21537 32.305 3.2239 1 41778 26155 27772 27789 41200 41200 0.09047140854363533 SISGRKKWSHA 11 Unmodified _SISGRKKWSHA_ 0 0 0 REV__ENSG00000152760|ENST00000282670|DYNLT5 REV__ENSG00000152760|ENST00000282670|DYNLT5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.0928649902344 4 314.926915 1255.67855 -0.93168 -0.00029341 1.2966 0.00040833 0.36491 0.00011492 314.9270425585548 8.5096 0.7238 7.7154 7.2539 7.9777 -0.79424 29 20 2 0 0 0 0.96224 1 797 797 0.50596 0.41111 1 85990 + 41779 17120 27773 27790 41201 41201 0.060941152687973954 SISHPRSCR 9 Unmodified _SISHPRSCR_ 0 0 0 nc|ENSG00000148218|P13716-2|ALAD;ENST00000482847.5_1_9:116150582-116155760:-|nuORF nc|ENSG00000148218|P13716-2|ALAD nc|ENSG00000148218|P13716-2|ALAD MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2649536132812 2 521.764175 1041.5138 0.2055 0.00010722 -0.76204 -0.0003976 -0.55654 -0.00029038 521.763724321638 111.45 1.2886 111.45 110.96 112.25 0 131 36 6 0 0 0 0.39168 1 21844 21844 0.37959 0 1 188940000 41780 10405 27774 27791 41202 41202 -0.0053002014267349296 SISISVAR 8 Unmodified _SISISVAR_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 416.8286437988281 2 416.747985 831.481417 0.25941 0.00010811 -0.17299 -7.2095E-05 0.086418 3.6014E-05 416.74788341215776 67.072 0.46698 63.575 63.319 63.786 -3.4965 18 12 2 0 0 0 8448 1 12570 12570 43.772 13.932 1 1220800 + 41781 5847 27775 27792 41203 41203 0.05893515725983889 SISISVAR 8 Unmodified _SISISVAR_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 416.747985 831.481417 -0.26184 -0.00010912 0.025901 1.0794E-05 -0.23594 -9.8329E-05 416.7480095809627 63.755 0.38614 63.755 63.537 63.923 0 0.16076 6.6053E-05 NaN 43.772 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1396700 + 41782 5847 27775 27792 0.05893515725983889 SISISVAR 8 Unmodified _SISISVAR_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 416.747985 831.481417 -0.18524 -7.7199E-05 -0.0042831 -1.785E-06 -0.18952 -7.8984E-05 416.74797587777465 66.572 0.48434 63.464 63.271 63.756 -3.1086 -0.1304 4.0895E-05 NaN 43.772 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1569400 + 41783 5847 27775 27792 0.05893515725983889 SISISVAR 8 Unmodified _SISISVAR_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 416.747985 831.481417 -0.038283 -1.5954E-05 -0.040155 -1.6735E-05 -0.078438 -3.2689E-05 416.74790355361625 66.909 0.51777 63.583 63.273 63.791 -3.3268 -0.011525 1.0996E-05 NaN 43.772 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1283400 + 41784 5847 27775 27792 0.05893515725983889 SISKWIVNGTV 11 Unmodified _SISKWIVNGTV_ 0 0 0 REV__nc|ENSG00000187824|Q6QAJ8-2|TMEM220 REV__nc|ENSG00000187824|Q6QAJ8-2|TMEM220 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2967529296875 2 602.340238 1202.66592 NaN NaN NaN NaN NaN NaN NaN 158.39 1 153.59 153.09 154.09 -4.7952 0 0 0 0.22765 1 31496 31496 10.151 0.76745 1 + 41785 19112 27776 27793 41204 41204 0.07269659085886815 SISLSVSFPDV 11 Unmodified _SISLSVSFPDV_ 0 0 0 nc|ENSG00000114013|P42081-5|CD86;nc|ENSG00000114013|P42081-6|CD86;nc|ENSG00000114013|P42081-4|CD86;nc|ENSG00000114013|P42081-3|CD86;ENSG00000114013|ENST00000330540|CD86 nc|ENSG00000114013|P42081-5|CD86 nc|ENSG00000114013|P42081-5|CD86 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3197631835938 2 575.803154 1149.59175 0.22943 0.00013211 0.43447 0.00025017 0.6639 0.00038228 575.8035184180097 135.54 0.63669 130.71 130.38 131.02 -4.8307 32 17 2 0 0 0 0.68099 2 26117 26117;26124 13.042 3.6593 1 3817000 41786 2770 27777 27794 41205;41206 41205 0.02294271203709286 SISLWPPE 8 Unmodified _SISLWPPE_ 0 0 0 ENST00000472515.1_1_2:27439329-27439813:+|nuORF ENST00000472515.1_1_2:27439329-27439813:+|nuORF ENST00000472515.1_1_2:27439329-27439813:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1645812988281 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 112.65 1 108.12 107.62 108.62 -4.5259 0 0 0 0.21486 1 21623 21623 1.4819 0 1 41787 10226 27778 27795 41207 41207 0.00354693631857117 SISRNYGPFY 10 Unmodified _SISRNYGPFY_ 0 0 0 REV__ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant REV__ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2941284179688 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 107.38 1 103.06 102.56 103.56 -4.32 0 0 0 0.22588 1 21147 21147 10.074 1.9184 1 + 41788 13155 27779 27796 41208 41208 -0.021160600163966592 SISSPTSLRF 10 Unmodified _SISSPTSLRF_ 0 0 0 WDR64|p.L1065*|1|0.34|ENSG00000162843|chr1:241801161-241801161|T/-|frameshift_variant;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64;nc|ENSG00000162843|B1ANS9-2|WDR64 WDR64|p.L1065*|1|0.34|ENSG00000162843|chr1:241801161-241801161|T/-|frameshift_variant WDR64|p.L1065*|1|0.34|ENSG00000162843|chr1:241801161-241801161|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7864379882812 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 143.86 1 139.21 138.71 139.71 -4.656 0 0 0 0.22588 1 28466 28466 13.042 2.8591 1 41789 5374 27780 27797 41209 41209 0.03372824126381602 SISSSCQLST 10 Unmodified _SISSSCQLST_ 0 0 0 REV__OR51S1|p.T247Pfs*16|1|0.4|ENSG00000176922|chr11:4848470-4848470|T/-|frameshift_variant REV__OR51S1|p.T247Pfs*16|1|0.4|ENSG00000176922|chr11:4848470-4848470|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.0995178222656 3 338.158702 1011.45428 NaN NaN NaN NaN NaN NaN NaN 99.219 1 94.95 94.45 95.45 -4.2692 0 0 0 0.22588 1 18966 18966 1.7423 0.41263 1 + 41790 24410 27781 27798 41210 41210 -0.05099380667365949 SISTRLGY 8 Unmodified _SISTRLGY_ 0 0 0 REV__ENST00000367999.8_1_1:161136243-161136698:+|nuORF REV__ENST00000367999.8_1_1:161136243-161136698:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 448.2531433105469 2 448.745442 895.476331 -0.082165 -3.6871E-05 0.42887 0.00019245 0.34671 0.00015558 448.7455331673869 60.486 0.48824 60.486 60.314 60.802 0 17 13 2 0 0 0 1.0095 1 11636 11636 2.5775 0 1 923560 + 41791 20932 27782 27799 41211 41211 0.024412118633676982 SITAIKCGH 9 Unmodified _SITAIKCGH_ 0 0 0 REV__tr|U7SVC6|U7SVC6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01212PE=3SV=1 REV__tr|U7SVC6|U7SVC6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01212PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2591247558594 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 117.03 1 112.44 111.94 112.94 -4.5815 0 0 0 0.23508 1 22454 22454 7.9102 1.5561 1 + 41792 25191 27783 27800 41212 41212 0.012935583655803384 SITALALSSV 10 Unmodified _SITALALSSV_ 0 0 0 ENSG00000163251|ENST00000295417|FZD5 ENSG00000163251|ENST00000295417|FZD5 ENSG00000163251|ENST00000295417|FZD5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78363037109375 2 481.281857 960.549162 -0.19101 -9.1932E-05 -0.02042 -9.8278E-06 -0.21144 -0.00010176 481.2817725501397 79.831 0.94025 76.155 75.69 76.63 -3.676 59 26 3 0 0 0 0.29353 1 15264 15264 37.974 0 1 5761200 41793 5410 27784 27801 41213 41213 0.06730920866141332 SITDDGLYY 9 Unmodified _SITDDGLYY_ 0 0 0 REV__ENSG00000183690|ENST00000420999|EFHC2 REV__ENSG00000183690|ENST00000420999|EFHC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6943359375 2 523.73748 1045.46041 -0.056014 -2.9337E-05 -1.9699 -0.0010317 -2.026 -0.0010611 524.2390311078739 44.963 0.17293 42.215 42.1 42.273 -2.7475 6 4 2 0 0 0 0.66537 1 8157 8157 8.5933 1.304 1 592650 + 41794 18851 27785 27802 41214 41214 -0.06050539164175461 SITEPPGID 9 Unmodified _SITEPPGID_ 0 0 0 REV__MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant REV__MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2492370605469 2 464.73474 927.454927 0.14169 6.585E-05 -0.13658 -6.3471E-05 0.0051193 2.3791E-06 464.73464293332887 91.024 0.55143 87.216 86.927 87.479 -3.8083 27 15 2 0 0 0 0.37087 1 17468 17468 0.40827 0 1 1526300 + 41795 18124 27786 27803 41215 41215 -0.011702179559961223 SITERAGY 8 Unmodified _SITERAGY_ 0 0 0 ENSG00000115598|ENST00000264257|IL1RL2 ENSG00000115598|ENST00000264257|IL1RL2 ENSG00000115598|ENST00000264257|IL1RL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 448.2531433105469 2 448.727249 895.439946 -0.082851 -3.7177E-05 0.098306 4.4113E-05 0.015455 6.9352E-06 448.7272652811077 60.893 0.73383 60.893 60.557 61.291 0 45 20 3 0 0 0 1.0095 1 11636 11636 2.5775 0 1 6536200 41796 2871 27787 27804 41216 41216 -0.011956650333331709 SITKVSVVE 9 Unmodified _SITKVSVVE_ 0 0 0 ENSG00000152404|ENST00000282251|CWF19L2;CWF19L2|p.N326Ifs*19|1|0.46|ENSG00000152404|chr11:107429255-107429255|T/-|frameshift_variant;CWF19L2|p.E467Rfs*17|1|0.29|ENSG00000152404|chr11:107428833-107428834|-/T|frameshift_variant;CWF19L2|p.E467Nfs*22|1|0.26|ENSG00000152404|chr11:107428834-107428834|T/-|frameshift_variant;nc|ENSG00000152404|Q2TBE0-3|CWF19L2;CWF19L2|p.A661Lfs*32|1|0.08|ENSG00000152404|chr11:107353629-107353629|T/-|frameshift_variant;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;CWF19L2|p.L754Wfs*5|1|0.36|ENSG00000152404|chr11:107336655-107336655|A/-|frameshift_variant ENSG00000152404|ENST00000282251|CWF19L2 ENSG00000152404|ENST00000282251|CWF19L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7834167480469 2 481.281857 960.549162 0.07517 3.6178E-05 -0.1762 -8.48E-05 -0.10103 -4.8622E-05 481.2816538249409 79.598 0.81738 76.088 75.659 76.476 -3.5102 58 22 3 0 0 0 0.15214 1 15539 15539 43.858 5.8843 1 5568500 41797 4920 27788 27805 41217 41217 0.06730920866152701 SITKVSVVE 9 Unmodified _SITKVSVVE_ 0 0 0 ENSG00000152404|ENST00000282251|CWF19L2;CWF19L2|p.N326Ifs*19|1|0.46|ENSG00000152404|chr11:107429255-107429255|T/-|frameshift_variant;CWF19L2|p.E467Rfs*17|1|0.29|ENSG00000152404|chr11:107428833-107428834|-/T|frameshift_variant;CWF19L2|p.E467Nfs*22|1|0.26|ENSG00000152404|chr11:107428834-107428834|T/-|frameshift_variant;nc|ENSG00000152404|Q2TBE0-3|CWF19L2;CWF19L2|p.A661Lfs*32|1|0.08|ENSG00000152404|chr11:107353629-107353629|T/-|frameshift_variant;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;CWF19L2|p.L754Wfs*5|1|0.36|ENSG00000152404|chr11:107336655-107336655|A/-|frameshift_variant ENSG00000152404|ENST00000282251|CWF19L2 ENSG00000152404|ENST00000282251|CWF19L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7659912109375 2 481.281857 960.549162 -0.023724 -1.1418E-05 -0.24255 -0.00011674 -0.26627 -0.00012815 481.28166765028675 79.91 0.92024 76.105 75.646 76.566 -3.8048 59 25 3 0 0 0 0.15214 3 15157 15157;15196;15220 43.858 7.3375 1 5163900 41798 4920 27788 27805 41218;41219;41220 41218 0.06730920866152701 SITKVSVVE 9 Unmodified _SITKVSVVE_ 0 0 0 ENSG00000152404|ENST00000282251|CWF19L2;CWF19L2|p.N326Ifs*19|1|0.46|ENSG00000152404|chr11:107429255-107429255|T/-|frameshift_variant;CWF19L2|p.E467Rfs*17|1|0.29|ENSG00000152404|chr11:107428833-107428834|-/T|frameshift_variant;CWF19L2|p.E467Nfs*22|1|0.26|ENSG00000152404|chr11:107428834-107428834|T/-|frameshift_variant;nc|ENSG00000152404|Q2TBE0-3|CWF19L2;CWF19L2|p.A661Lfs*32|1|0.08|ENSG00000152404|chr11:107353629-107353629|T/-|frameshift_variant;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;CWF19L2|p.L754Wfs*5|1|0.36|ENSG00000152404|chr11:107336655-107336655|A/-|frameshift_variant ENSG00000152404|ENST00000282251|CWF19L2 ENSG00000152404|ENST00000282251|CWF19L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.783203125 2 481.281857 960.549162 -0.19101 -9.1932E-05 -0.02042 -9.8278E-06 -0.21144 -0.00010176 481.2817725501397 79.831 0.94025 76.155 75.69 76.63 -3.676 59 26 3 0 0 0 0.13708 2 15221 15221;15282 46.021 8.047 1 5761200 41799 4920 27788 27805 41221;41222 41221 0.06730920866152701 SITPAMQPA 9 Unmodified _SITPAMQPA_ 0 0 0 ENST00000395105.8_1_15:74472186-74472399:-|nuORF ENST00000395105.8_1_15:74472186-74472399:-|nuORF ENST00000395105.8_1_15:74472186-74472399:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2416687011719 2 458.233853 914.453153 NaN NaN NaN NaN NaN NaN NaN 31.935 1 29.787 29.287 30.287 -2.1483 0 0 0 0.22621 1 5517 5517 15.847 0 1 41800 9424 27789 27806 41223 41223 -0.0074955024559812955 SITRAMYRVEF 11 Unmodified _SITRAMYRVEF_ 0 0 0 tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1 tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1 tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23114013671875 3 458.239578 1371.69691 NaN NaN NaN NaN NaN NaN NaN 92.401 1 88.593 88.093 89.093 -3.8083 0 0 0 0.22632 1 17705 17705 0.172 0.17144 1 41801 25915 27790 27807 41224 41224 0.02592489128460329 SITSELHAV 9 Unmodified _SITSELHAV_ 0 0 0 ENSG00000004700|ENST00000444129|RECQL ENSG00000004700|ENST00000444129|RECQL ENSG00000004700|ENST00000444129|RECQL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7225646972656 2 478.756007 955.497461 0.15927 7.6253E-05 -0.043784 -2.0962E-05 0.11549 5.5291E-05 478.75596289876546 95.017 0.69948 90.826 90.473 91.173 -4.1911 34 19 3 0 0 0 0.16442 1 18138 18138 42.095 0 1 2799100 41802 976 27791 27808 41225 41225 0.01793177172248761 SITSELHAV 9 Unmodified _SITSELHAV_ 0 0 0 ENSG00000004700|ENST00000444129|RECQL ENSG00000004700|ENST00000444129|RECQL ENSG00000004700|ENST00000444129|RECQL MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.756007 955.497461 -0.24368 -0.00011666 0.15388 7.3671E-05 -0.089799 -4.2992E-05 478.75611883162486 91.185 0.49321 91.185 90.933 91.426 0 0.24587 0.00012241 NaN 42.095 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3824100 41803 976 27791 27808 0.01793177172248761 SITSGEMKEMT 11 Unmodified _SITSGEMKEMT_ 0 0 0 REV__nc|ENSG00000127603|O94854|MACF1 REV__nc|ENSG00000127603|O94854|MACF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 607.2589721679688 2 607.275589 1212.53662 0.5131 0.0003116 2.4279 0.0014744 2.941 0.001786 607.7778458297469 167.25 0.17082 162.3 162.16 162.33 -4.948 6 4 2 0 0 0 0.95337 1 32837 32837 1.1933 0 1 12454000 + 41804 24029 27792 27809 41226 41226 -0.06114226650720411 SITSGRHLQP 10 Unmodified _SITSGRHLQP_ 0 0 0 REV__PLXNB3|p.V1655Cfs*7|1|0.56|ENSG00000198753|chrX:153777236-153777236|G/-|frameshift_variant REV__PLXNB3|p.V1655Cfs*7|1|0.56|ENSG00000198753|chrX:153777236-153777236|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7681884765625 2 548.298904 1094.58326 0.47399 0.00025989 1.4589 0.00079991 1.9329 0.0010598 548.8002380215089 155.39 0.24945 150.13 150.04 150.29 -5.2527 8 6 2 0 0 0 0.871 1 30145 30145 1.3295 0 1 647640 + 41805 19443 27793 27810 41227 41227 0.03974762077768901 SITSPMKVV 9 Unmodified _SITSPMKVV_ 0 0 0 ENST00000355485.6_1_1:116234212-116234524:+|nuORF ENST00000355485.6_1_1:116234212-116234524:+|nuORF ENST00000355485.6_1_1:116234212-116234524:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77435302734375 2 481.272978 960.531403 0.046963 2.2602E-05 -0.22292 -0.00010729 -0.17596 -8.4685E-05 481.27284576211264 93.866 0.69113 89.875 89.521 90.212 -3.9907 38 19 3 0 0 0 0.28819 1 18379 18379 32.305 2.4649 1 2757900 41806 8956 27794 27811 41228 41228 0.049558823396409935 SITSPMKVV 9 Unmodified _SITSPMKVV_ 0 0 0 ENST00000355485.6_1_1:116234212-116234524:+|nuORF ENST00000355485.6_1_1:116234212-116234524:+|nuORF ENST00000355485.6_1_1:116234212-116234524:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7745056152344 2 481.272978 960.531403 0.23304 0.00011215 -0.17828 -8.58E-05 0.054759 2.6354E-05 481.272843487783 93.996 0.69013 89.852 89.483 90.173 -4.1435 31 19 2 0 0 0 0.40602 1 17941 17941 25.399 3.6527 1 2139600 41807 8956 27794 27811 41229 41229 0.049558823396409935 SITSPMKVV 9 Unmodified _SITSPMKVV_ 0 0 0 ENST00000355485.6_1_1:116234212-116234524:+|nuORF ENST00000355485.6_1_1:116234212-116234524:+|nuORF ENST00000355485.6_1_1:116234212-116234524:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 481.272978 960.531403 0.046963 2.2602E-05 -0.22292 -0.00010729 -0.17596 -8.4685E-05 481.27284576211264 93.866 0.69113 89.875 89.521 90.212 -3.9907 0.0041217 -0.00010186 NaN 32.305 38 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2757900 41808 8956 27794 27811 0.049558823396409935 SITYARPLARL 11 Unmodified _SITYARPLARL_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7642211914062 2 630.874779 1259.73501 NaN NaN NaN NaN NaN NaN NaN 104.6 1 100.25 99.754 100.75 -4.346 0 0 0 0.23018 1 20038 20038 8.1555 0.54658 1 + 41809 19227 27795 27812 41230 41230 0.11552743105471563 SITYLFVL 8 Unmodified _SITYLFVL_ 0 0 0 REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73040771484375 2 478.278586 954.54262 NaN NaN NaN NaN NaN NaN NaN 129.46 1 124.64 124.14 125.14 -4.817 0 0 0 0.22676 1 24854 24854 1.4551 0 1 + 41810 16153 27796 27813 41231 41231 0.06353027705438308 SITYVNRLP 9 Unmodified _SITYVNRLP_ 0 0 0 nc|ENSG00000167525|Q8NCQ7-3|PROCA1 nc|ENSG00000167525|Q8NCQ7-3|PROCA1 nc|ENSG00000167525|Q8NCQ7-3|PROCA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2871704101562 2 531.800749 1061.58694 0.3925 0.00020873 -0.40051 -0.00021299 -0.0080136 -4.2616E-06 531.8006004238371 105.83 2.2189 101.45 100.88 103.09 -4.3764 156 63 4 0 0 0 0.38188 1 20304 20304 26.884 4.2256 1 296610000 41811 12445 27797 27814 41232 41232 0.058614318515992636 SIVEEALGT 9 Unmodified _SIVEEALGT_ 0 0 0 ENST00000367155.7_1_1:205325766-205325838:-|nuORF ENST00000367155.7_1_1:205325766-205325838:-|nuORF ENST00000367155.7_1_1:205325766-205325838:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24407958984375 2 459.742565 917.470577 0.40568 0.00018651 -0.24368 -0.00011203 0.162 7.4478E-05 459.74239806167276 118.35 1.0428 113.74 113.21 114.25 -4.6106 70 28 3 0 0 0 0.0523 1 22679 22679 6.4869 0 1 22694000 41812 9059 27798 27815 41233 41233 0.008540685610569199 SIVGEVTDAA 10 Unmodified _SIVGEVTDAA_ 0 0 0 REV__ENST00000569052.1_1_15:30433073-30433275:+|nuORF REV__ENST00000569052.1_1_15:30433073-30433275:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2446594238281 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 27.564 1 25.567 25.067 26.067 -1.9962 0 0 0 0.22588 1 4616 4616 10.074 1.4806 1 + 41813 23151 27799 27816 41234 41234 -0.0054283292729451205 SIVKEKIY 8 Unmodified _SIVKEKIY_ 0 0 0 tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1 tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1 tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.254150390625 2 490.294768 978.574983 0.17985 8.8179E-05 0.055899 2.7407E-05 0.23575 0.00011559 490.29466862402774 141.65 0.76752 136.66 136.27 137.04 -4.9877 34 21 2 0 0 0 0.70613 1 27208 27208 13.508 0 1 3948900 41814 26144 27800 27817 41235 41235 0.08483815108422732 SIVLPKEPAQ 10 Unmodified _SIVLPKEPAQ_ 0 0 0 REV__ENSG00000148300|ENST00000371942|REXO4 REV__ENSG00000148300|ENST00000371942|REXO4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.281005859375 2 541.316232 1080.61791 0.29016 0.00015707 1.6768 0.0009077 1.967 0.0010648 541.3188391370052 112.25 0.14444 112.25 112.18 112.32 0 5 3 2 0 0 0 0.89145 1 22070 22070 4.897 1.9018 1 1412100 + 41815 16968 27801 27818 41236 41236 0.08082585165834644 SIVLSSVILL 10 Unmodified _SIVLSSVILL_ 0 0 0 tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1 tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1 tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2625732421875 2 522.339175 1042.6638 NaN NaN NaN NaN NaN NaN NaN 154.09 1 154.09 153.59 154.59 0 0 0 0 0.22588 1 30880 30880 3.5965 0 1 41816 25945 27802 27819 41237 41237 0.14417230348090015 SIVMLTFF 8 Unmodified _SIVMLTFF_ 0 0 0 REV__ENST00000401087.3_3_1:149089877-149094694:-|nuORF REV__ENST00000401087.3_3_1:149089877-149094694:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.740966796875 2 479.259339 956.504126 0.48269 0.00023134 -1.8049 -0.00086503 -1.3222 -0.0006337 479.2606846666501 123.1 0.17959 118.37 118.25 118.43 -4.731 6 4 2 0 0 0 0.99494 1 23655 23655 4.756 0 1 465630 + 41817 21357 27803 27820 41238 41238 0.024133987992627226 SIVMTFWGF 9 Unmodified _SIVMTFWGF_ 0 0 0 REV__ENSG00000179796|ENST00000396641|LRRC3B REV__ENSG00000179796|ENST00000396641|LRRC3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7915649414062 2 544.267696 1086.52084 0.32879 0.00017895 -1.6095 -0.00087598 -1.2807 -0.00069703 544.2666677625049 150.6 1.0877 145.87 145.39 146.48 -4.7323 48 30 2 0 0 0 0.77732 1 29970 29970 4.3292 0 1 3260100 + 41818 18667 27804 27821 41239 41239 -0.018961003147978772 SIVNKNTPA 9 Unmodified _SIVNKNTPA_ 0 0 0 nc|ENSG00000197857|P15621-2|ZNF44;ENSG00000197857|ENST00000355684|ZNF44;nc|ENSG00000197857|P15621-3|ZNF44;nc|ENSG00000197857|P15621|ZNF44;ZNF44|p.H235Lfs*7|1|0.05|ENSG00000197857|chr19:12273695-12273696|-/GAATGTAAGCA|frameshift_variant;ZNF44|p.W256Gfs*34|2|0.32|ENSG00000197857|chr19:12273633-12273633|A/-|frameshift_variant nc|ENSG00000197857|P15621-2|ZNF44 nc|ENSG00000197857|P15621-2|ZNF44 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.09954833984375 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 134.23 1 129.41 128.91 129.91 -4.8175 0 0 0 0.23508 1 25842 25842 1.0715 0 1 41819 7404 27805 27822 41240 41240 0.03988883409124355 SIVPLHSSM 9 Unmodified _SIVPLHSSM_ 0 0 0 ENSG00000174145|ENST00000309447|NWD2;NWD2|p.D1262Gfs*18|1|0.39|ENSG00000174145|chr4:37445769-37445770|-/G|frameshift_variant;NWD2|p.W1259Gfs*22|4|0.26|ENSG00000174145|chr4:37445757-37445757|T/-|frameshift_variant;NWD2|p.K1317Nfs*43|1|0.35|ENSG00000174145|chr4:37445936-37445936|A/-|frameshift_variant ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1441345214844 3 324.172394 969.495352 NaN NaN NaN NaN NaN NaN NaN 71.625 1 68.376 67.876 68.876 -3.2492 0 0 0 0.23508 1 13950 13950 2.7352 1.0826 1 41820 6333 27806 27823 41241 41241 0.009384251627807316 SIVQMRKLI 9 Unmodified _SIVQMRKLI_ 0 0 0 ENST00000476173.5_1_10:81841903-81850168:+|nuORF ENST00000476173.5_1_10:81841903-81850168:+|nuORF ENST00000476173.5_1_10:81841903-81850168:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 544.3218994140625 2 544.336444 1086.65834 NaN NaN NaN NaN NaN NaN NaN 160.39 1 155.16 154.66 155.66 -5.2299 0 0 0 0.23508 1 31142 31142 3.9444 0 1 41821 10283 27807 27824 41242 41242 0.11847228284636913 SIVTITFEV 9 Unmodified _SIVTITFEV_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000196873|ENST00000360171|ZNG1C;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000460896.1_9:42685444-42714533:+|nuORF;ENST00000487575.6_1_9:121469-150531:-|nuORF;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000479583.5_1_2:114228547-114253317:+|nuORF;ENST00000486387.2_9:42689759-42714533:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000456188.5_1_2:114214762-114253317:+|nuORF;ENST00000382436.3_9:42674366-42714533:+|nuORF;ENST00000468417.1_1_2:114239754-114251622:+|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 336.85980224609375 3 336.858581 1007.55391 NaN NaN NaN NaN NaN NaN NaN 111.24 1 107.01 106.51 107.51 -4.2289 0 0 0 0.19512 1 21409 21409 12.241 12.177 1 41822 4027 27808 27825 41243 41243 0.05043805008904201 SIVTNLIGI 9 Unmodified _SIVTNLIGI_ 0 0 0 REV__nc|ENSG00000180068|P47883|OR3A4P REV__nc|ENSG00000180068|P47883|OR3A4P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2493896484375 2 465.286943 928.559333 0.23038 0.00010719 -0.28736 -0.0001337 -0.056976 -2.651E-05 465.2867545194233 119.59 1.27 115.07 114.27 115.54 -4.5221 89 35 3 0 0 0 0.37087 1 23431 23431 2.6312 0.70373 1 5201300 + 41823 24191 27809 27826 41244 41244 0.09219528591370363 SIWKADFDV 9 Unmodified _SIWKADFDV_ 0 0 0 nc|ENSG00000215811|A8MVZ5|BTNL10P nc|ENSG00000215811|A8MVZ5|BTNL10P nc|ENSG00000215811|A8MVZ5|BTNL10P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2713623046875 2 540.771657 1079.52876 0.38294 0.00020708 1.0746 0.0005811 1.4575 0.00078818 541.2736072965649 144.25 0.7285 139.3 139.06 139.79 -4.9445 28 20 2 0 0 0 0.68435 1 27927 27927 7.2892 0 1 20341000 41824 12597 27810 27827 41245 41245 -0.007822497936786021 SIWKSEVPKW 10 Unmodified _SIWKSEVPKW_ 0 0 0 REV__nc|ENSG00000132554|Q8NE09-3|RGS22 REV__nc|ENSG00000132554|Q8NE09-3|RGS22 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7554931640625 2 630.342781 1258.67101 0.98645 0.0006218 0.46217 0.00029133 1.4486 0.00091313 630.3427999627975 140.05 0.17108 135.4 135.31 135.48 -4.6439 6 4 2 0 0 0 0.90598 1 27641 27641 9.3831 6.8846 1 1105900 + 41825 16124 27811 27828 41246 41246 0.05201962948513028 SIWMWPHH 8 Unmodified _SIWMWPHH_ 0 0 0 REV__ENSG00000135749|ENST00000258229|PCNX2 REV__ENSG00000135749|ENST00000258229|PCNX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7726440429688 2 547.255454 1092.49636 0.15213 8.3254E-05 3.3173 0.0018154 3.4694 0.0018986 547.2583491243778 149.43 0.14252 144.23 144.15 144.29 -5.1994 5 3 2 0 0 0 0.89712 1 28936 28936 0.12286 0.093582 1 627080 + 41826 16287 27812 27829 41247 41247 -0.046193156776553224 SIWNPGPLTP 10 Unmodified _SIWNPGPLTP_ 0 0 0 REV__ENST00000431259.6_1_2:179388144-179393471:+|nuORF REV__ENST00000431259.6_1_2:179388144-179393471:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2638549804688 2 541.287474 1080.5604 0.09351 5.0616E-05 -0.10487 -5.6766E-05 -0.011362 -6.1503E-06 541.2872863270691 113.8 0.80705 109.34 108.83 109.63 -4.4538 35 22 2 0 0 0 0.68961 1 22368 22368 12.241 0 1 1402000 + 41827 21616 27813 27830 41248 41248 0.023337429602634074 SIWPHRLA 8 Unmodified _SIWPHRLA_ 0 0 0 REV__nc|ENSG00000143479|O43781-2|DYRK3 REV__nc|ENSG00000143479|O43781-2|DYRK3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2568054199219 2 490.277244 978.539935 NaN NaN NaN NaN NaN NaN NaN 154.23 1 149.01 148.51 149.51 -5.2209 0 0 0 0.21486 1 29900 29900 12.532 1.7076 1 + 41828 16733 27814 27831 41249 41249 0.04980617091109707 SIWYFYYFFFS 11 Unmodified _SIWYFYYFFFS_ 0 0 0 L1MD2_dup3350|chr5:176309943-176310863:+|2.4169742649477106|0.265229905058228|3.19|483.0|48|1|anti-sense L1MD2_dup3350|chr5:176309943-176310863:+|2.4169742649477106|0.265229905058228|3.19|483.0|48|1|anti-sense L1MD2_dup3350|chr5:176309943-176310863:+|2.4169742649477106|0.265229905058228|3.19|483.0|48|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.681884765625 3 523.907823 1568.70164 NaN NaN NaN NaN NaN NaN NaN 137.17 1 132.53 132.03 133.03 -4.6413 0 0 0 0.23698 1 27068 27068 0.45452 0 1 41829 12032 27815 27832 41250 41250 -0.059963034571183016 SIYDNLLWE 9 Unmodified _SIYDNLLWE_ 0 0 0 CNTN6|p.K418Sfs*63|2|0.28|ENSG00000134115|chr3:1329817-1329817|A/-|frameshift_variant;CNTN6|p.G547Efs*16|1|0.3|ENSG00000134115|chr3:1372438-1372438|A/-|frameshift_variant;CNTN6|p.P893Qfs*22|1|0.33|ENSG00000134115|chr3:1385766-1385766|C/-|frameshift_variant;CNTN6|p.V894Sfs*25|1|0.27|ENSG00000134115|chr3:1385765-1385766|-/C|frameshift_variant;CNTN6|p.M994Yfs*15|1|0.07|ENSG00000134115|chr3:1402479-1402480|-/T|frameshift_variant;ENSG00000134115|ENST00000446702|CNTN6 CNTN6|p.K418Sfs*63|2|0.28|ENSG00000134115|chr3:1329817-1329817|A/-|frameshift_variant CNTN6|p.K418Sfs*63|2|0.28|ENSG00000134115|chr3:1329817-1329817|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3187866210938 2 576.782222 1151.54989 0.45785 0.00026408 -0.29631 -0.0001709 0.16154 9.3176E-05 576.7817664329413 107.85 0.76608 107.85 107.48 108.24 0 30 21 2 0 0 0 0.72864 1 21180 21180 11.64 0 1 1815300 41830 601 27816 27833 41251 41251 -0.019822844848249588 SIYIKIKIQ 9 Unmodified _SIYIKIKIQ_ 0 0 0 REV__ENST00000313754.4_1_3:94225612-94226386:-|nuORF REV__ENST00000313754.4_1_3:94225612-94226386:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 369.2154235839844 3 369.237504 1104.69068 NaN NaN NaN NaN NaN NaN NaN 61.413 1 58.174 57.674 58.674 -3.2395 0 0 0 0.19687 1 11496 11496 8.1555 1.5252 1 + 41831 18173 27817 27834 41252 41252 0.14252338959272493 SIYPLYQY 8 Unmodified _SIYPLYQY_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-3|WDR81 REV__nc|ENSG00000167716|Q562E7-3|WDR81 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6803588867188 2 523.7633 1045.51205 NaN NaN NaN NaN NaN NaN NaN 119.11 1 114.7 114.2 115.2 -4.4088 0 0 0 0.21323 1 22922 22922 14.582 0 1 + 41832 17961 27818 27835 41253 41253 -0.008887506796099842 SIYPSPTGV 9 Unmodified _SIYPSPTGV_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.22747802734375 2 460.739825 919.465098 -0.021562 -9.9343E-06 0.34585 0.00015934 0.32428 0.00014941 460.73993322784366 93.421 1.3607 93.421 92.678 94.039 0 78 38 3 0 0 0 0.0057446 1 18246 18246 125.62 61.388 1 9710400 41833 6337 27819 27836 41254 41254 0.002143897692462815 SIYPSPTGV 9 Unmodified _SIYPSPTGV_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.234130859375 2 460.739825 919.465098 -0.046909 -2.1613E-05 0.24742 0.000114 0.20051 9.2383E-05 460.7398901883018 97.782 1.4288 93.684 93.012 94.441 -4.0978 102 40 3 0 0 0 0.0057446 1 19144 19144 125.62 70.851 1 17943000 41834 6337 27819 27836 41255 41255 0.002143897692462815 SIYPSPTGV 9 Unmodified _SIYPSPTGV_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.233642578125 2 460.739825 919.465098 0.13166 6.0663E-05 0.16137 7.4347E-05 0.29303 0.00013501 460.7398599246561 98.098 1.521 93.829 92.882 94.403 -4.2692 113 43 4 0 0 0 0.027812 1 18681 18681 104.8 40.563 1 17906000 41835 6337 27819 27836 41256 41256 0.002143897692462815 SIYPSPTGV 9 Unmodified _SIYPSPTGV_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2263488769531 2 460.739825 919.465098 0.029272 1.3487E-05 0.27347 0.000126 0.30274 0.00013948 460.7398817417137 97.579 1.4151 93.66 92.953 94.369 -3.9194 100 40 3 0 0 0 0.14834 1 18849 18849 57.471 11.45 1 19057000 41836 6337 27819 27836 41257 41257 0.002143897692462815 SKCAAGGR 8 Unmodified _SKCAAGGR_ 0 0 0 REV__ENSG00000072840|ENST00000264956|EVC REV__ENSG00000072840|ENST00000264956|EVC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21856689453125 2 375.18978 748.365007 NaN NaN NaN NaN NaN NaN NaN 53.76 1 50.877 50.377 51.377 -2.8837 0 0 0 0.2396 1 10243 10243 0.12286 0 1 + 41837 14295 27820 27837 41258 41258 -0.019241260455487463 SKCHIKCP 8 Unmodified _SKCHIKCP_ 0 0 0 REV__ENST00000332290.3_1_6:170104364-170104589:+|nuORF REV__ENST00000332290.3_1_6:170104364-170104589:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2306823730469 2 458.23059 914.446628 NaN NaN NaN NaN NaN NaN NaN 15.045 1 13.835 13.335 14.335 -1.2106 0 0 0 0.2396 1 2044 2044 0.0082765 0 1 + 41838 20624 27821 27838 41259 41259 -0.01401766677975047 SKDEIAKQF 9 Unmodified _SKDEIAKQF_ 0 0 0 REV__ENSG00000096696|ENST00000379802|DSP REV__ENSG00000096696|ENST00000379802|DSP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2687377929688 2 533.282389 1064.55022 0.51412 0.00027417 -0.37529 -0.00020013 0.13883 7.4036E-05 533.2822374500761 62.62 0.5215 59.204 58.875 59.397 -3.4158 28 14 3 0 0 0 0.41081 1 11643 11643 0.40827 0 1 2164700 + 41839 14625 27822 27839 41260 41260 0.02053135235018999 SKDESDIY 8 Unmodified _SKDESDIY_ 0 0 0 REV__ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant REV__ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7260437011719 2 478.714005 955.413456 0.32166 0.00015398 -0.50029 -0.0002395 -0.17864 -8.5516E-05 478.71373076145113 67.726 1.4907 64.399 63.791 65.282 -3.3268 56 42 2 0 0 0 0.60622 1 12673 12673 21.747 0 1 894880 + 41840 19518 27823 27840 41261 41261 -0.06603398715333242 SKDFRPNK 8 Unmodified _SKDFRPNK_ 0 0 0 ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000021645|Q9Y4C0|NRXN3;nc|ENSG00000021645|Q9HDB5|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 330.9974670410156 3 331.182169 990.524678 0.018571 6.1503E-06 0.19135 6.3373E-05 0.20993 6.9524E-05 331.1821486565053 24.646 0.72222 23.112 22.507 23.229 -1.5342 31 20 2 0 0 0 1.004 1 3997 3997 13.042 2.243 1 448900 41841 1126 27824 27841 41262 41262 0.029037055032858916 SKDFRPNK 8 Unmodified _SKDFRPNK_ 0 0 0 ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000021645|Q9Y4C0|NRXN3;nc|ENSG00000021645|Q9HDB5|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 331.182169 990.524678 -0.41362 -0.00013698 0.71176 0.00023572 0.29814 9.8739E-05 331.18233317894334 23.017 0.72915 23.017 22.609 23.338 0 -0.032097 0.00019303 NaN 13.042 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 491280 41842 1126 27824 27841 0.029037055032858916 SKDFRPNK 8 Unmodified _SKDFRPNK_ 0 0 0 ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000021645|Q9Y4C0|NRXN3;nc|ENSG00000021645|Q9HDB5|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 331.182169 990.524678 0.73899 0.00024474 -0.17806 -5.897E-05 0.56093 0.00018577 331.18191324671596 24.646 0.72359 22.998 22.58 23.303 -1.6482 -0.05084 -0.00069105 NaN 13.042 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 295520 41843 1126 27824 27841 0.029037055032858916 SKDFRPNK 8 Unmodified _SKDFRPNK_ 0 0 0 ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000021645|Q9Y4C0|NRXN3;nc|ENSG00000021645|Q9HDB5|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 331.182169 990.524678 -0.91411 -0.00030274 0.87744 0.00029059 -0.036663 -1.2142E-05 331.1824394624893 24.923 0.78887 23.069 22.398 23.187 -1.8534 0.020359 0.00035764 NaN 13.042 29 22 2 NaN NaN NaN NaN 0 NaN NaN 0 575410 41844 1126 27824 27841 0.029037055032858916 SKDQFILKY 9 Unmodified _SKDQFILKY_ 0 0 0 REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.213134765625 3 381.213246 1140.61791 -0.65441 -0.00024947 0.72929 0.00027801 0.074872 2.8542E-05 381.2134716859389 78.215 0.84703 74.556 74.165 75.012 -3.6588 62 23 4 0 0 0 0.60061 1 14968 14968 8.9762 0 1 10638000 + 41845 18651 27825 27842 41263 41263 0.053225851658453394 SKELVRAEY 9 Unmodified _SKELVRAEY_ 0 0 0 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.8592834472656 3 365.532868 1093.57677 -0.46122 -0.00016859 0.25125 9.1841E-05 -0.20997 -7.6751E-05 365.53300839063644 57.597 0.5878 57.597 57.272 57.86 0 23 16 2 0 0 0 0.35556 1 11034 11034 19.626 7.3853 1 1359700 + 41846 16082 27826 27843 41264 41264 0.03372824126381602 SKELVRAEY 9 Unmodified _SKELVRAEY_ 0 0 0 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 365.532868 1093.57677 -0.46122 -0.00016859 0.25125 9.1841E-05 -0.20997 -7.6751E-05 365.53300839063644 57.597 0.5878 57.597 57.272 57.86 0 0.086627 0.00016367 NaN 19.626 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1359700 + 41847 16082 27826 27843 0.03372824126381602 SKELVRAEY 9 Unmodified _SKELVRAEY_ 0 0 0 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 365.532868 1093.57677 -0.25606 -9.3598E-05 -0.087816 -3.21E-05 -0.34388 -0.0001257 365.532938316131 60.428 0.54832 57.495 57.204 57.752 -2.9333 -0.014975 -0.00020815 NaN 19.626 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1508500 + 41848 16082 27826 27843 0.03372824126381602 SKELVRAEY 9 Unmodified _SKELVRAEY_ 0 0 0 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 365.532868 1093.57677 0.093835 3.43E-05 -0.30132 -0.00011014 -0.20749 -7.5843E-05 365.5327796656934 60.865 0.52274 57.495 57.169 57.691 -3.3694 -0.01503 -0.00044228 NaN 19.626 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1197100 + 41849 16082 27826 27843 0.03372824126381602 SKELVRAEY 9 Unmodified _SKELVRAEY_ 0 0 0 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 365.532868 1093.57677 -0.52403 -0.00019155 0.38505 0.00014075 -0.13899 -5.0805E-05 365.5329217547448 60.677 0.45775 57.454 57.208 57.666 -3.2237 -0.056622 0.00031039 NaN 19.626 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1233500 + 41850 16082 27826 27843 0.03372824126381602 SKESSGHPS 9 Unmodified _SKESSGHPS_ 0 0 0 REV__nc|ENSG00000102445|Q9H714-3|RUBCNL REV__nc|ENSG00000102445|Q9H714-3|RUBCNL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2286071777344 2 458.211963 914.409374 NaN NaN NaN NaN NaN NaN NaN 28.985 1 26.989 26.489 27.489 -1.9962 0 0 0 0.19687 1 4912 4912 8.1555 6.7005 1 + 41851 14839 27827 27844 41265 41265 -0.05125443418364739 SKFTNFKRI 9 Unmodified _SKFTNFKRI_ 0 0 0 SYNJ2|p.E523K|1|0.44|ENSG00000078269|chr6:158066485-158066485|G/A|missense_variant SYNJ2|p.E523K|1|0.44|ENSG00000078269|chr6:158066485-158066485|G/A|missense_variant SYNJ2|p.E523K|1|0.44|ENSG00000078269|chr6:158066485-158066485|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2231140136719 3 380.888986 1139.64513 0.17557 6.6873E-05 -0.12639 -4.8141E-05 0.049179 1.8732E-05 380.8889120206221 94.669 0.59597 90.478 90.195 90.791 -4.1912 26 16 2 0 0 0 0.68708 1 18112 18112 7.1017 0 1 1847100 41852 25811 27828 27845 41266 41266 0.08089113496885147 SKFTNFKRI 9 Unmodified _SKFTNFKRI_ 0 0 0 SYNJ2|p.E523K|1|0.44|ENSG00000078269|chr6:158066485-158066485|G/A|missense_variant SYNJ2|p.E523K|1|0.44|ENSG00000078269|chr6:158066485-158066485|G/A|missense_variant SYNJ2|p.E523K|1|0.44|ENSG00000078269|chr6:158066485-158066485|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2225341796875 3 380.888986 1139.64513 -0.64624 -0.00024615 0.56505 0.00021522 -0.081188 -3.0924E-05 380.88917227934513 94.4 0.55061 90.556 90.296 90.847 -3.844 25 15 2 0 0 0 0.68708 1 18168 18168 7.1017 0 1 2087700 41853 25811 27828 27845 41267 41267 0.08089113496885147 SKGCLLPG 8 Unmodified _SKGCLLPG_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71234130859375 2 387.712556 773.41056 NaN NaN NaN NaN NaN NaN NaN 34.636 1 32.318 31.818 32.818 -2.3175 0 0 0 0.22692 1 6364 6364 0.25148 0 1 + 41854 23644 27829 27846 41268 41268 0.01479099416826557 SKGELQNW 8 Unmodified _SKGELQNW_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24298095703125 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 32.368 1 32.368 31.868 32.868 0 0 0 0 0.20462 1 5877 5877 21.747 2.3076 1 41855 1652 27830 27847 41269 41269 -0.015319761420073519 SKGKTSFLRQ 10 Unmodified _SKGKTSFLRQ_ 0 0 0 REV__ENSG00000183431|ENST00000373019|SF3A3 REV__ENSG00000183431|ENST00000373019|SF3A3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3197631835938 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 133.08 1 133.08 132.58 133.58 0 0 0 0 0.22588 1 26321 26321 12.873 2.722 1 + 41856 18835 27831 27848 41270 41270 0.07655908145943613 SKGKVKQVK 9 Unmodified _SKGKVKQVK_ 0 0 0 REV__ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant REV__ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 501.32708740234375 2 501.326934 1000.63931 NaN NaN NaN NaN NaN NaN NaN 123.42 1 123.42 122.92 123.92 0 0 0 0 0.19687 1 24328 24328 8.1555 0 1 + 41857 19299 27832 27849 41271 41271 0.1390201498522856 SKGNAALT 8 Unmodified _SKGNAALT_ 0 0 0 REV__ENST00000479543.1_3_11:35282443-35283261:-|nuORF REV__ENST00000479543.1_3_11:35282443-35283261:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21038818359375 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 115.37 1 115.37 114.87 115.87 0 0 0 0 0.2396 1 22706 22706 0.12286 0 1 + 41858 15202 27833 27850 41272 41272 0.018129672835243582 SKGVTGWA 8 Unmodified _SKGVTGWA_ 0 0 0 REV__ENSG00000177575|ENST00000432237|CD163 REV__ENSG00000177575|ENST00000432237|CD163 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 402.7657165527344 2 403.213778 804.413003 0.041755 1.6836E-05 -0.45328 -0.00018277 -0.41153 -0.00016593 403.21340056764484 135.91 0.7375 131.01 130.71 131.45 -4.8951 26 20 2 0 0 0 0.89687 1 26162 26162 3.2813 0 1 3071300 + 41859 18565 27834 27851 41273 41273 0.0029727114613251615 SKIDKQLLL 9 Unmodified _SKIDKQLLL_ 0 0 0 REV__IRS4|p.K843Pfs*106|1|0.02|ENSG00000133124|chrX:108733819-108733820|-/GA|frameshift_variant REV__IRS4|p.K843Pfs*106|1|0.02|ENSG00000133124|chrX:108733819-108733820|-/GA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.878662109375 3 353.225375 1056.6543 -0.2368 -8.3642E-05 0.4283 0.00015129 0.19151 6.7645E-05 353.55994617045354 24.978 0.26769 24.978 24.813 25.081 0 11 7 2 0 0 0 0.58921 1 4334 4334 8.1555 0 1 315560 + 41860 23675 27835 27852 41274 41274 0.12823462062578983 SKIEKKQSF 9 Unmodified _SKIEKKQSF_ 0 0 0 MAGEB3|p.S144Afs*25|2|0.13|ENSG00000198798|chrX:30236349-30236349|A/-|frameshift_variant;ENSG00000198798|ENST00000361644|MAGEB3 MAGEB3|p.S144Afs*25|2|0.13|ENSG00000198798|chrX:30236349-30236349|A/-|frameshift_variant MAGEB3|p.S144Afs*25|2|0.13|ENSG00000198798|chrX:30236349-30236349|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7871704101562 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 133.54 1 128.66 128.16 129.16 -4.8726 0 0 0 0.19665 1 25659 25659 0.40827 0.34428 1 41861 7497 27836 27853 41275 41275 0.07009701023071102 SKIKKTVKGY 10 Unmodified _SKIKKTVKGY_ 0 0 0 REV__tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1 REV__tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3109741210938 2 576.360973 1150.70739 NaN NaN NaN NaN NaN NaN NaN 128.63 1 123.82 123.32 124.32 -4.817 0 0 0 0.22588 1 24691 24691 2.9952 0 1 + 41862 24918 27837 27854 41276 41276 0.13806839845233299 SKIWLIVGI 9 Unmodified _SKIWLIVGI_ 0 0 0 nc|ENSG00000142166|P17181-4|IFNAR1;ENSG00000142166|ENST00000270139|IFNAR1 nc|ENSG00000142166|P17181-4|IFNAR1 nc|ENSG00000142166|P17181-4|IFNAR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 514.8281860351562 2 514.828778 1027.643 NaN NaN NaN NaN NaN NaN NaN 171.55 1 166.68 166.18 167.18 -4.873 0 0 0 0.19646 1 34005 34005 0.029283 0.021006 1 41863 4406 27838 27855 41277 41277 0.13028684759092357 SKIWSENKA 9 Unmodified _SKIWSENKA_ 0 0 0 REV__ENSG00000203942|ENST00000370640|C10orf62 REV__ENSG00000203942|ENST00000370640|C10orf62 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2634887695312 2 531.782556 1061.55056 -0.03123 -1.6607E-05 0.15116 8.0384E-05 0.11993 6.3777E-05 531.7825935363267 44.39 0.91129 41.643 41.291 42.202 -2.7475 76 25 5 0 0 0 0.48707 1 8031 8031 20.415 2.2682 1 16909000 + 41864 19504 27839 27856 41278 41278 0.022245549549097632 SKKDLSVSV 9 Unmodified _SKKDLSVSV_ 0 0 0 ENST00000474704.1_1_17:27041945-27042505:-|nuORF;ENST00000484161.5_1_17:27041663-27042501:-|nuORF ENST00000474704.1_1_17:27041945-27042505:-|nuORF ENST00000474704.1_1_17:27041945-27042505:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7788391113281 2 481.779482 961.544411 NaN NaN NaN NaN NaN NaN NaN 148.96 1 144.25 143.75 144.75 -4.7095 0 0 0 0.16777 1 29584 29584 0.87518 0 1 41865 10265 27840 27857 41279 41279 0.06210036723382473 SKKFLRIV 8 Unmodified _SKKFLRIV_ 0 0 0 REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.0082702636719 3 330.886805 989.638586 0.14197 4.6977E-05 -0.19938 -6.5973E-05 -0.057409 -1.8996E-05 330.88666032488 35.935 0.52518 33.682 33.433 33.958 -2.2527 22 14 2 0 0 0 1.0278 1 6316 6316 1.4819 0 1 1035600 + 41866 19228 27841 27858 41280 41280 0.14335220336158727 SKKKKGIKKK 10 Unmodified _SKKKKGIKKK_ 0 0 0 REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 586.8517456054688 2 586.913707 1171.81286 NaN NaN NaN NaN NaN NaN NaN 165.8 1 160.82 160.32 161.32 -4.9811 0 0 0 2.8426 1 32442 32442 0 0 1 + 41867 15500 27842 27859 41281 41281 0.23382800761487488 SKKKKKKKKK 10 Unmodified _SKKKKKKKKK_ 0 0 0 nc|ENSG00000089335|Q9NR11|ZNF302;ENST00000373344.9_1_X:76762287-76762440:-|nuORF;ENST00000349223.9_1_16:68260779-68260980:+|nuORF;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH nc|ENSG00000089335|Q9NR11|ZNF302;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 629.9122314453125 2 629.955907 1257.89726 NaN NaN NaN NaN NaN NaN NaN 164.48 1 159.42 158.92 159.92 -5.0648 0 0 0 0.22588 1 32082 32082 0 0 1 41868 12246;4713 27843 27860 41282 41282 0.27862751578254574 SKKKKKKKKKR 11 Unmodified _SKKKKKKKKKR_ 0 0 0 nc|ENSG00000089335|Q9NR11|ZNF302 nc|ENSG00000089335|Q9NR11|ZNF302 nc|ENSG00000089335|Q9NR11|ZNF302 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 472.3407897949219 3 472.340067 1413.99837 NaN NaN NaN NaN NaN NaN NaN 177.71 1 177.71 177.21 178.21 0 0 0 0 0.23698 1 36813 36813 0 0 1 41869 12246 27844 27861 41283 41283 0.30793203280950365 SKKKKKKKKL 10 Unmodified _SKKKKKKKKL_ 0 0 0 REV__ENST00000495836.1_1_2:69771529-69870271:-|nuORF REV__ENST00000495836.1_1_2:69771529-69870271:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7679443359375 2 622.450457 1242.88636 NaN NaN NaN NaN NaN NaN NaN 61.207 1 57.968 57.468 58.468 -3.2395 0 0 0 0.22588 1 11454 11454 0 0 1 + 41870 22384 27845 27862 41284 41284 0.27463349203981124 SKKKKKKKSKK 11 Unmodified _SKKKKKKKSKK_ 0 0 0 REV__ENSG00000125482|ENST00000334270|TTF1 REV__ENSG00000125482|ENST00000334270|TTF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 673.4721069335938 2 673.471921 1344.92929 NaN NaN NaN NaN NaN NaN NaN 167 1 167 166.5 167.5 0 0 0 0 0.23698 1 34095 34095 0.23584 0.23584 1 + 41871 15816 27846 27863 41285 41285 0.2706211926138167 SKKKKKKL 8 Unmodified _SKKKKKKL_ 0 0 0 REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 494.2874755859375 2 494.355494 986.696435 NaN NaN NaN NaN NaN NaN NaN 163.3 1 158.51 158.01 159.01 -4.7898 0 0 0 0.2396 1 32545 32545 0.12286 0 1 + 41872 15375 27847 27864 41286 41286 0.2025548226159799 SKKKVSKLK 9 Unmodified _SKKKVSKLK_ 0 0 0 REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1 REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6923217773438 2 523.358234 1044.70191 -0.16432 -8.6001E-05 -1.3331 -0.00069768 -1.4974 -0.00078368 523.3561651537786 123.94 0.11171 119.21 119.14 119.25 -4.731 4 2 2 0 0 0 0.65565 1 23802 23802 0 0 1 486280 + 41873 25281 27848 27865 41287 41287 0.18135161053396587 SKKNLQVV 8 Unmodified _SKKNLQVV_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ARHGAP35|p.R335Lfs*12|1|0.14|ENSG00000160007|chr19:46919679-46919679|G/-|frameshift_variant;ARHGAP35|p.Y859Ifs*28|1|0.09|ENSG00000160007|chr19:46921245-46921245|T/-|frameshift_variant;ARHGAP35|p.K945Rfs*3|1|0.4|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant;ARHGAP35|p.F938Lfs*10|1|0.18|ENSG00000160007|chr19:46921484-46921484|T/-|frameshift_variant ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2384033203125 2 458.284734 914.554916 0.092484 4.2384E-05 -0.04574 -2.0962E-05 0.046745 2.1422E-05 458.2846735294211 75.176 0.56243 71.453 71.162 71.725 -3.7227 28 15 2 0 0 0 0.70344 1 14213 14213 13.906 0.86358 1 1375700 41874 5226 27849 27866 41288 41288 0.09422064168472843 SKKNQKKQY 9 Unmodified _SKKNQKKQY_ 0 0 0 nc|ENSG00000142512|Q96LC7-8|SIGLEC10;ENST00000357375.4_1_19:51914355-51919928:-|nuORF;nc|ENSG00000142512|Q96LC7-9|SIGLEC10;nc|ENSG00000142512|Q96LC7-6|SIGLEC10;nc|ENSG00000142512|Q96LC7-7|SIGLEC10;nc|ENSG00000142512|Q96LC7-2|SIGLEC10;nc|ENSG00000142512|Q96LC7-4|SIGLEC10;nc|ENSG00000142512|Q96LC7-3|SIGLEC10;ENSG00000142512|ENST00000339313|SIGLEC10 nc|ENSG00000142512|Q96LC7-8|SIGLEC10 nc|ENSG00000142512|Q96LC7-8|SIGLEC10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.331298828125 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 118.68 1 114.27 113.77 114.77 -4.4088 0 0 0 0.23508 1 22834 22834 10.824 0.75 1 41875 4420 27850 27867 41289 41289 0.07655908145943613 SKKRIPIS 8 Unmodified _SKKRIPIS_ 0 0 0 REV__ELF4|p.D192G|1|0.18|ENSG00000102034|chrX:130071377-130071377|T/C|missense_variant REV__ELF4|p.D192G|1|0.18|ENSG00000102034|chrX:130071377-130071377|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1645812988281 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 116.25 1 116.25 115.75 116.75 0 0 0 0 0.23422 1 22888 22888 0.62683 0.50396 1 + 41876 13801 27851 27868 41290 41290 0.11986056922410171 SKKRIPIS 8 Unmodified _SKKRIPIS_ 0 0 0 REV__ELF4|p.D192G|1|0.18|ENSG00000102034|chrX:130071377-130071377|T/C|missense_variant REV__ELF4|p.D192G|1|0.18|ENSG00000102034|chrX:130071377-130071377|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1654357910156 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 116.5 1 116.5 116 117 0 0 0 0 0.23312 1 22938 22938 0.62683 0.61855 1 + 41877 13801 27851 27868 41291 41291 0.11986056922410171 SKKRIPIS 8 Unmodified _SKKRIPIS_ 0 0 0 REV__ELF4|p.D192G|1|0.18|ENSG00000102034|chrX:130071377-130071377|T/C|missense_variant REV__ELF4|p.D192G|1|0.18|ENSG00000102034|chrX:130071377-130071377|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648864746094 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 117.54 1 117.54 117.04 118.04 0 0 0 0 0.23664 1 23153 23153 0.12286 0 1 + 41878 13801 27851 27868 41292 41292 0.11986056922410171 SKKRIRKA 8 Unmodified _SKKRIRKA_ 0 0 0 REV__THOC7|p.N115Kfs*6|1|0.12|ENSG00000163634|chr3:63837983-63837984|-/T|frameshift_variant REV__THOC7|p.N115Kfs*6|1|0.12|ENSG00000163634|chr3:63837983-63837984|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 493.8326721191406 2 493.832717 985.650882 NaN NaN NaN NaN NaN NaN NaN 10.767 1 10.767 10.267 11.267 0 0 0 0 0.21486 1 1371 1371 0 0 1 + 41879 24799 27852 27869 41293 41293 0.15748256799201954 SKKVKLKMKKK 11 Unmodified _SKKVKLKMKKK_ 0 0 0 REV__ENST00000482655.2_1_13:28008892-28009731:+|nuORF REV__ENST00000482655.2_1_13:28008892-28009731:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 673.4338989257812 2 673.457425 1344.9003 NaN NaN NaN NaN NaN NaN NaN 168.15 1 168.15 167.65 168.65 0 0 0 0 0.22632 1 34413 34413 0 0 1 + 41880 15674 27853 27870 41294 41294 0.2416425864073517 SKKVLQPKC 9 Unmodified _SKKVLQPKC_ 0 0 0 REV__ENSG00000013588|ENST00000014914|GPRC5A REV__ENSG00000013588|ENST00000014914|GPRC5A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.2070007324219 3 344.207438 1029.60049 NaN NaN NaN NaN NaN NaN NaN 134.84 1 130.2 129.7 130.7 -4.6399 0 0 0 0.23508 1 26595 26595 2.2828 1.0894 1 + 41881 13950 27854 27871 41295 41295 0.08686966359186954 SKKVLQPKC 9 Unmodified _SKKVLQPKC_ 0 0 0 REV__ENSG00000013588|ENST00000014914|GPRC5A REV__ENSG00000013588|ENST00000014914|GPRC5A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.1706848144531 3 344.207438 1029.60049 NaN NaN NaN NaN NaN NaN NaN 133.1 1 128.25 127.75 128.75 -4.8527 0 0 0 0.23508 1 25568 25568 2.4985 0 1 + 41882 13950 27854 27871 41296 41296 0.08686966359186954 SKLRVFEKA 9 Unmodified _SKLRVFEKA_ 0 0 0 REV__ENSG00000137766|ENST00000260323|UNC13C REV__ENSG00000137766|ENST00000260323|UNC13C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.205322265625 3 359.885353 1076.63423 -0.45565 -0.00016398 0.11241 4.0455E-05 -0.34324 -0.00012353 359.88547008792455 17.618 0.3361 16.307 16.103 16.439 -1.3109 11 9 2 0 0 0 0.88054 1 2807 2807 2.2828 0 1 139570 + 41883 16407 27855 27872 41297 41297 0.09897711122607689 SKLSKRKKDR 10 Unmodified _SKLSKRKKDR_ 0 0 0 REV__ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant REV__ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 416.239013671875 3 415.929844 1244.7677 -0.2543 -0.00010577 -1.8817 -0.00078266 -2.136 -0.00088843 415.9288089478823 60.294 0.59739 60.294 60.065 60.662 0 25 16 2 0 0 0 0.91149 1 11634 11634 0.56317 0.15491 1 1419900 + 41884 13052 27856 27873 41298 41298 0.15510950228326692 SKLSKRKKDR 10 Unmodified _SKLSKRKKDR_ 0 0 0 REV__ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant REV__ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 415.929844 1244.7677 -0.11199 -4.6581E-05 -2.2969 -0.00095537 -2.4089 -0.0010019 415.9288433130259 63.432 0.54838 60.434 60.185 60.733 -2.9975 0.023911 -0.00016396 NaN 0.56317 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1320500 + 41885 13052 27856 27873 0.15510950228326692 SKLSKRKKDR 10 Unmodified _SKLSKRKKDR_ 0 0 0 REV__ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant REV__ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 415.929844 1244.7677 0.15866 6.5991E-05 -2.2957 -0.00095486 -2.1371 -0.00088887 415.92873131662384 63.929 0.52302 60.513 60.252 60.775 -3.4158 0.10234 -0.00016244 NaN 0.56317 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1547800 + 41886 13052 27856 27873 0.15510950228326692 SKLSKRKKDR 10 Unmodified _SKLSKRKKDR_ 0 0 0 REV__ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant REV__ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 415.929844 1244.7677 -0.10281 -4.2763E-05 -2.0532 -0.00085399 -2.156 -0.00089675 415.9287673401966 63.658 0.51673 60.401 60.194 60.711 -3.2567 -0.0095607 0.00014017 NaN 0.56317 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1830800 + 41887 13052 27856 27873 0.15510950228326692 SKLTKEILEKE 11 Unmodified _SKLTKEILEKE_ 0 0 0 REV__tr|U7SU71|U7SU71_FUSNUImidazolonepropionaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutIPE=3SV=1 REV__tr|U7SU71|U7SU71_FUSNUImidazolonepropionaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutIPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 439.9245300292969 3 439.925654 1316.75513 NaN NaN NaN NaN NaN NaN NaN 10.628 1 9.5612 9.0612 10.061 -1.0664 0 0 0 0.23698 1 1160 1160 0 0 1 + 41888 25148 27857 27874 41299 41299 0.10942449254707753 SKMLTNPE 8 Unmodified _SKMLTNPE_ 0 0 0 ENST00000359660.9_1_5:107195069-107195318:-|nuORF ENST00000359660.9_1_5:107195069-107195318:-|nuORF ENST00000359660.9_1_5:107195069-107195318:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2309265136719 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 15.454 1 14.101 13.601 14.601 -1.3534 0 0 0 0.21486 1 2129 2129 5.2307 0 1 41889 9004 27858 27875 41300 41300 -0.014418541082250158 SKMQDIPIY 9 Unmodified _SKMQDIPIY_ 0 0 0 ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant;ARAP2|p.N1365Ifs*21|1|0.42|ENSG00000047365|chr4:36114232-36114232|T/-|frameshift_variant;ENSG00000047365|ENST00000303965|ARAP2;ENST00000508066.1_1_4:36162071-36231213:-|nuORF;ARAP2|p.L915Tfs*3|1|0.42|ENSG00000047365|chr4:36158739-36158740|-/T|frameshift_variant ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7828979492188 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 21.1 1 19.715 19.215 20.215 -1.3847 0 0 0 0.1599 1 3305 3305 29.082 2.1979 1 41890 191 27859 27876 41301 41301 0.004749635057351043 SKMVLIALRK 10 Unmodified _SKMVLIALRK_ 0 0 0 LTN1|p.G1459Rfs*7|1|0.05|ENSG00000198862|chr21:28941327-28941328|-/T|frameshift_variant;LTN1|p.V1458Efs*10|1|0.05|ENSG00000198862|chr21:28941329-28941330|-/TATGCTT|frameshift_variant;ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1 LTN1|p.G1459Rfs*7|1|0.05|ENSG00000198862|chr21:28941327-28941328|-/T|frameshift_variant LTN1|p.G1459Rfs*7|1|0.05|ENSG00000198862|chr21:28941327-28941328|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 386.9096984863281 3 386.917888 1157.73183 NaN NaN NaN NaN NaN NaN NaN 10.649 1 9.7451 9.2451 10.245 -0.90401 0 0 0 0.22588 1 1351 1351 0 0 1 41891 7511 27860 27877 41302 41302 0.15927776727062337 SKNKKHSK 8 Unmodified _SKNKKHSK_ 0 0 0 nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A nc|ENSG00000196504|O75400-3|PRPF40A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7210693359375 2 478.785433 955.556313 NaN NaN NaN NaN NaN NaN NaN 101.62 1 97.602 97.102 98.102 -4.0212 0 0 0 0.20761 1 19526 19526 19.257 0 1 41892 7274 27861 27878 41303 41303 0.07675698257230579 SKPFEKRT 8 Unmodified _SKPFEKRT_ 0 0 0 REV__P2RX7|p.I577T|1|0.09|ENSG00000089041|chr12:121184744-121184744|T/C|missense_variant REV__P2RX7|p.I577T|1|0.09|ENSG00000089041|chr12:121184744-121184744|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.0082702636719 3 331.522303 991.545079 0.1552 5.1452E-05 -0.10685 -3.5422E-05 0.048352 1.603E-05 331.5222224450472 35.59 0.51875 33.337 33.055 33.573 -2.2527 24 14 3 0 0 0 1.0271 1 6316 6316 2.9952 0 1 867290 + 41893 24420 27862 27879 41304 41304 0.04896876163093111 SKPFEKRT 8 Unmodified _SKPFEKRT_ 0 0 0 REV__P2RX7|p.I577T|1|0.09|ENSG00000089041|chr12:121184744-121184744|T/C|missense_variant REV__P2RX7|p.I577T|1|0.09|ENSG00000089041|chr12:121184744-121184744|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 331.522303 991.545079 -0.61743 -0.00020469 0.49434 0.00016389 -0.12309 -4.0806E-05 331.5225127645541 35.649 0.32667 33.256 33.091 33.417 -2.3938 -0.032286 0.00025303 NaN 2.9952 16 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1274500 + 41894 24420 27862 27879 0.04896876163093111 SKPFEKRT 8 Unmodified _SKPFEKRT_ 0 0 0 REV__P2RX7|p.I577T|1|0.09|ENSG00000089041|chr12:121184744-121184744|T/C|missense_variant REV__P2RX7|p.I577T|1|0.09|ENSG00000089041|chr12:121184744-121184744|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 331.522303 991.545079 -0.37379 -0.00012392 0.24013 7.961E-05 -0.13366 -4.431E-05 331.5224571232235 35.547 0.38362 33.271 33.072 33.455 -2.2766 -0.017343 1.9943E-07 NaN 2.9952 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 580390 + 41895 24420 27862 27879 0.04896876163093111 SKPHLISQLE 10 Unmodified _SKPHLISQLE_ 0 0 0 ENSG00000189420|ENST00000338647|ZFP92 ENSG00000189420|ENST00000338647|ZFP92 ENSG00000189420|ENST00000338647|ZFP92 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3223876953125 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 118.25 1 113.64 113.14 114.14 -4.6106 0 0 0 0.22588 1 22688 22688 10.151 2.5416 1 41896 7227 27863 27880 41305 41305 0.0653308605183156 SKPKGRRHI 9 Unmodified _SKPKGRRHI_ 0 0 0 REV__nc|ENSG00000135899|Q9HB58-4|SP110 REV__nc|ENSG00000135899|Q9HB58-4|SP110 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20062255859375 3 360.224591 1077.65194 NaN NaN NaN NaN NaN NaN NaN 39.943 1 37.394 36.894 37.894 -2.5491 0 0 0 0.23508 1 7430 7430 2.086 0.75648 1 + 41897 16294 27864 27881 41306 41306 0.11622471168129778 SKPKHQIKST 10 Unmodified _SKPKHQIKST_ 0 0 0 REV__nc|ENSG00000169064|A8MT70-3|ZBBX REV__nc|ENSG00000169064|A8MT70-3|ZBBX MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 577.7901000976562 2 577.33803 1152.66151 NaN NaN NaN NaN NaN NaN NaN 171.58 1 171.58 171.08 172.08 0 0 0 0 2.8426 1 35360 35360 0.84494 0.67294 1 + 41898 18074 27865 27882 41307 41307 0.09128194662980604 SKPQPLLQ 8 Unmodified _SKPQPLLQ_ 0 0 0 nc|ENSG00000249471|Q6AW86-2|ZNF324B nc|ENSG00000249471|Q6AW86-2|ZNF324B nc|ENSG00000249471|Q6AW86-2|ZNF324B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.1838684082031 3 304.183399 909.528367 NaN NaN NaN NaN NaN NaN NaN 144.34 1 139.4 138.9 139.9 -4.9445 0 0 0 0.21486 1 27878 27878 3.2813 0 1 41899 12624 27866 27883 41308 41308 0.06998375277146351 SKPVLPLVPP 10 Unmodified _SKPVLPLVPP_ 0 0 0 ENSG00000107140|ENST00000336395|TESK1 ENSG00000107140|ENST00000336395|TESK1 ENSG00000107140|ENST00000336395|TESK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6773071289062 2 523.83406 1045.65357 0.16903 8.8542E-05 4.2209 0.0022111 4.39 0.0022996 524.3387461377536 114.58 0.17053 114.58 114.51 114.68 0 5 4 2 0 0 0 0.86078 1 22533 22533 4.897 1.9018 1 848390 41900 2414 27867 27884 41309 41309 0.13256667413520518 SKQHRVRLK 9 Unmodified _SKQHRVRLK_ 0 0 0 REV__ENST00000462977.1_1_1:161139323-161139551:+|nuORF REV__ENST00000462977.1_1_1:161139323-161139551:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3292846679688 2 576.359631 1150.70471 NaN NaN NaN NaN NaN NaN NaN 143.57 1 138.67 138.17 139.17 -4.8982 0 0 0 0.1964 1 27711 27711 0.12781 0.098532 1 + 41901 21915 27868 27885 41310 41310 0.1353842923092543 SKQRRRKKRKL 11 Unmodified _SKQRRRKKRKL_ 0 0 0 REV__BCORL1|p.I1392Sfs*58|1|0.14|ENSG00000085185|chrX:130028726-130028726|G/-|frameshift_variant REV__BCORL1|p.I1392Sfs*58|1|0.14|ENSG00000085185|chrX:130028726-130028726|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4006958007812 2 742.492042 1482.96953 NaN NaN NaN NaN NaN NaN NaN 173.67 1 168.77 168.27 169.27 -4.8977 0 0 0 0.23698 1 34490 34490 0.26902 0.26902 1 + 41902 13189 27869 27886 41311 41311 0.2473647870451714 SKRATGKGP 9 Unmodified _SKRATGKGP_ 0 0 0 ENST00000375807.7_1_9:91974106-91974298:+|nuORF ENST00000375807.7_1_9:91974106-91974298:+|nuORF ENST00000375807.7_1_9:91974106-91974298:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 301.1799011230469 3 301.178648 900.514114 NaN NaN NaN NaN NaN NaN NaN 107.17 1 107.17 106.67 107.67 0 0 0 0 0.23508 1 21073 21073 1.0715 0.10919 1 41903 9239 27870 27887 41312 41312 0.059877228488517176 SKRFCSNS 8 Unmodified _SKRFCSNS_ 0 0 0 FASTKD3|p.P598S|1|0.04|ENSG00000124279|chr5:7861241-7861241|G/A|missense_variant FASTKD3|p.P598S|1|0.04|ENSG00000124279|chr5:7861241-7861241|G/A|missense_variant FASTKD3|p.P598S|1|0.04|ENSG00000124279|chr5:7861241-7861241|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1645812988281 3 310.14836 927.42325 0.021932 6.8022E-06 -0.57156 -0.00017727 -0.54963 -0.00017047 310.14810322203203 112.85 0.53848 108.33 108.07 108.61 -4.5259 22 14 2 0 0 0 1.0231 1 21623 21623 5.7319 3.4491 1 1475800 41904 11800 27871 27888 41313 41313 -0.04336489190939119 SKRGFIFSPL 10 Unmodified _SKRGFIFSPL_ 0 0 0 ENST00000537595.1_10:102122289-102122870:+|nuORF ENST00000537595.1_10:102122289-102122870:+|nuORF ENST00000537595.1_10:102122289-102122870:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3301391601562 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 169.9 1 164.97 164.47 165.47 -4.9295 0 0 0 2.8426 1 33569 33569 0.063865 0.020077 1 41905 11038 27872 27889 41314 41314 0.080579976396848 SKRKQNQYIYR 11 Unmodified _SKRKQNQYIYR_ 0 0 0 nc|ENSG00000143552|Q5VU65-2|NUP210L;NUP210L|p.F1858Lfs*11|1|0.38|ENSG00000143552|chr1:153992928-153992928|A/-|frameshift_variant;ENSG00000143552|ENST00000368559|NUP210L;NUP210L|p.F928Sfs*10|1|0.1|ENSG00000143552|chr1:154060607-154060608|-/CTTGTTACAG|frameshift_variant;NUP210L|p.F959Lfs*32|1|0.36|ENSG00000143552|chr1:154058667-154058667|A/-|frameshift_variant nc|ENSG00000143552|Q5VU65-2|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3792114257812 2 742.410049 1482.80554 NaN NaN NaN NaN NaN NaN NaN 117.15 1 117.15 116.65 117.65 0 0 0 0 0.22632 1 23075 23075 0.0059557 0 1 41906 4503 27873 27890 41315 41315 0.08345416423139795 SKRLKKQYFER 11 Unmodified _SKRLKKQYFER_ 0 0 0 REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.37646484375 2 741.930617 1481.84668 NaN NaN NaN NaN NaN NaN NaN 40.29 1 37.75 37.25 38.25 -2.5398 0 0 0 0.23698 1 7214 7214 1.1933 0.84271 1 + 41907 16404 27874 27891 41316 41316 0.12503177462576787 SKRMFEELPH 10 Unmodified _SKRMFEELPH_ 0 0 0 nc|ENSG00000101938|Q9BU40-3|CHRDL1;nc|ENSG00000101938|Q9BU40|CHRDL1;nc|ENSG00000101938|Q9BU40-5|CHRDL1;ENSG00000101938|ENST00000372042|CHRDL1 nc|ENSG00000101938|Q9BU40-3|CHRDL1 nc|ENSG00000101938|Q9BU40-3|CHRDL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2350158691406 3 425.216774 1272.62849 NaN NaN NaN NaN NaN NaN NaN 15.122 1 14.007 13.507 14.507 -1.1142 0 0 0 0.22588 1 2314 2314 8.4443 0.96724 1 41908 2098 27875 27892 41317 41317 0.0030824454863704887 SKRMTCHKRYK 11 Unmodified _SKRMTCHKRYK_ 0 0 0 ENST00000468885.1_1_3:52720108-52720888:+|nuORF;ENST00000462550.5_1_3:52720108-52721634:+|nuORF;ENST00000492349.5_1_3:52720087-52722217:+|nuORF;ENST00000468146.5_1_3:52720039-52723083:+|nuORF;ENST00000496254.5_1_3:52720087-52724795:+|nuORF;ENSG00000163938|ENST00000418458|GNL3 ENST00000468885.1_1_3:52720108-52720888:+|nuORF ENST00000468885.1_1_3:52720108-52720888:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 719.3837890625 2 719.381923 1436.74929 NaN NaN NaN NaN NaN NaN NaN 167.83 1 163.04 162.54 163.54 -4.7898 0 0 0 0.23087 1 33888 33888 7.609 0.50723 1 41909 5486 27876 27893 41318 41318 0.04838748990437125 SKRQKLKR 8 Unmodified _SKRQKLKR_ 0 0 0 REV__MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant REV__MECP2|p.E432Afs*3|1|0.03|ENSG00000169057|chrX:154030534-154030535|CC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.267822265625 2 522.343449 1042.67235 NaN NaN NaN NaN NaN NaN NaN 148.67 1 143.61 143.11 144.11 -5.0595 0 0 0 0.23899 1 28798 28798 1.3295 0 1 + 41910 18072 27877 27894 41319 41319 0.15271641827916937 SKRQPPDT 8 Unmodified _SKRQPPDT_ 0 0 0 nc|ENSG00000163755|Q969F9-2|HPS3;ENSG00000163755|ENST00000296051|HPS3 nc|ENSG00000163755|Q969F9-2|HPS3 nc|ENSG00000163755|Q969F9-2|HPS3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 7.6797 1 6.6649 6.1649 7.1649 -1.0148 0 0 0 0.21486 1 647 647 0.35063 0 1 41911 5460 27878 27895 41320 41320 0.010754262322620889 SKRRRISY 8 Unmodified _SKRRRISY_ 0 0 0 CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;ENSG00000184661|ENST00000330560|CDCA2 CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2607421875 2 533.317432 1064.62031 NaN NaN NaN NaN NaN NaN NaN 70.493 1 70.493 69.993 70.993 0 0 0 0 0.21486 1 13656 13656 4.756 0 1 41912 458 27879 27896 41321 41321 0.09058478414181081 SKRUKKTRL 9 Unmodified _SKRUKKTRL_ 0 0 0 nc|ENSG00000211448|Q92813-2|DIO2;ENSG00000211448|ENST00000438257|DIO2 nc|ENSG00000211448|Q92813-2|DIO2 nc|ENSG00000211448|Q92813-2|DIO2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 389.9015197753906 3 389.878971 1166.61508 NaN NaN NaN NaN NaN NaN NaN 9.7207 1 9.7207 9.2207 10.221 0 0 0 0 0.23508 1 1154 1154 0 0 0 41913 7676 27880 27897 41322 41322 0.03843930996617928 SKSGANSV 8 Unmodified _SKSGANSV_ 0 0 0 REV__nc|ENSG00000140153|Q8TBZ3-4|WDR20 REV__nc|ENSG00000140153|Q8TBZ3-4|WDR20 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2126159667969 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 89.939 1 86.079 85.579 86.579 -3.8595 0 0 0 0.23899 1 17596 17596 1.3295 0 1 + 41914 16561 27881 27898 41323 41323 -0.012719096131945662 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650390625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 103.46 1 103.46 102.96 103.96 0 0 0 0 0.2386 1 20331 20331 0.12286 0 1 41915 892 27882 27899 41324 41324 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647033691406 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 107.36 1 107.36 106.86 107.86 0 0 0 0 0.2386 1 21111 21111 0.12286 0 1 41916 892 27882 27899 41325 41325 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651916503906 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 108.56 1 108.56 108.06 109.06 0 0 0 0 0.2386 1 21347 21347 0.12286 0 1 41917 892 27882 27899 41326 41326 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698303222656 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 108.89 1 108.89 108.39 109.39 0 0 0 0 0.2386 1 21412 21412 0.12286 0 1 41918 892 27882 27899 41327 41327 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16943359375 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 112.14 1 112.14 111.64 112.64 0 0 0 0 0.2386 1 22062 22062 0.12286 0 1 41919 892 27882 27899 41328 41328 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16485595703125 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 114.93 1 114.93 114.43 115.43 0 0 0 0 0.2386 1 22612 22612 0.12286 0 1 41920 892 27882 27899 41329 41329 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1652526855469 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 109.04 1 104.67 104.17 105.17 -4.3776 0 0 0 0.23899 1 21491 21491 0.12286 0 1 41921 892 27882 27899 41330 41330 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1652526855469 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 120.08 1 115.56 115.06 116.06 -4.5221 0 0 0 0.2386 1 23677 23677 0.12286 0 1 41922 892 27882 27899 41331 41331 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16455078125 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 120.63 1 116.11 115.61 116.61 -4.5221 0 0 0 0.2386 1 23782 23782 0.12286 0 1 41923 892 27882 27899 41332 41332 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647033691406 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 123.43 1 118.85 118.35 119.35 -4.5757 0 0 0 0.2386 1 24328 24328 0.12286 0 1 41924 892 27882 27899 41333 41333 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 124.27 1 119.69 119.19 120.19 -4.5757 0 0 0 0.2386 1 24501 24501 0.12286 0 1 41925 892 27882 27899 41334 41334 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647033691406 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 130.67 1 126.03 125.53 126.53 -4.6359 0 0 0 0.2386 1 25749 25749 0.12286 0 1 41926 892 27882 27899 41335 41335 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.164794921875 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 120.06 1 115.41 114.91 115.91 -4.645 0 0 0 0.2386 1 23040 23040 0.12286 0 1 41927 892 27882 27899 41336 41336 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650390625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 122.02 1 117.33 116.83 117.83 -4.6873 0 0 0 0.2386 1 23425 23425 0.12286 0 1 41928 892 27882 27899 41337 41337 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647644042969 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 131.2 1 126.37 125.87 126.87 -4.8355 0 0 0 0.2386 1 25195 25195 0.12286 0 1 41929 892 27882 27899 41338 41338 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1646423339844 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 123.53 1 118.94 118.44 119.44 -4.5926 0 0 0 0.2386 1 23784 23784 0.12286 0 1 41930 892 27882 27899 41339 41339 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1651916503906 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 124.19 1 119.6 119.1 120.1 -4.5926 0 0 0 0.2386 1 23901 23901 0.12286 0 1 41931 892 27882 27899 41340 41340 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1653137207031 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 125.32 1 120.67 120.17 121.17 -4.6495 0 0 0 0.2386 1 24110 24110 0.12286 0 1 41932 892 27882 27899 41341 41341 0.006916204141930393 SKSMYLTV 8 Unmodified _SKSMYLTV_ 0 0 0 DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16473388671875 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 142.16 1 137.27 136.77 137.77 -4.8982 0 0 0 0.2386 1 27430 27430 0.12286 0 1 41933 892 27882 27899 41342 41342 0.006916204141930393 SKSPLPSSPPP 11 Unmodified _SKSPLPSSPPP_ 0 0 0 REV__nc|ENSG00000143569|Q14157-4|UBAP2L REV__nc|ENSG00000143569|Q14157-4|UBAP2L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7904052734375 2 547.298039 1092.58152 0.48958 0.00026795 0.37094 0.00020301 0.86052 0.00047096 547.80129861314 75.309 0.16979 75.309 75.24 75.41 0 6 4 2 0 0 0 0.6353 1 14624 14624 16.149 5.3252 1 705420 + 41934 16738 27883 27900 41343 41343 0.038937082691290925 SKSRCLRI 8 Unmodified _SKSRCLRI_ 0 0 0 REV__ENST00000397149.3_1_9:33073799-33076635:-|nuORF REV__ENST00000397149.3_1_9:33073799-33076635:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78179931640625 2 481.781836 961.549119 NaN NaN NaN NaN NaN NaN NaN 18.254 1 16.943 16.443 17.443 -1.3109 0 0 0 0.2396 1 2959 2959 0 0 1 + 41935 21296 27884 27901 41344 41344 0.06680642385128976 SKTANGLA 8 Unmodified _SKTANGLA_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37;GPR37|p.E208K|1|0.4|ENSG00000170775|chr7:124764355-124764355|C/T|missense_variant ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2107238769531 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 26.925 1 25.003 24.503 25.503 -1.9222 0 0 0 0.2396 1 4478 4478 0.30703 0 1 41936 6095 27885 27902 41345 41345 0.018129672835129895 SKTISQYT 8 Unmodified _SKTISQYT_ 0 0 0 nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;ENSG00000117155|ENST00000342203|SSX2IP;ENST00000460500.1_1_1:85136304-85136920:-|nuORF;SSX2IP|p.K182Nfs*17|1|0.1|ENSG00000117155|chr1:84664544-84664544|T/-|frameshift_variant nc|ENSG00000117155|Q9Y2D8-2|SSX2IP nc|ENSG00000117155|Q9Y2D8-2|SSX2IP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2471008300781 2 464.242732 926.470912 0.13518 6.2757E-05 -0.19807 -9.1952E-05 -0.062888 -2.9196E-05 464.24252095722136 115.39 1.0191 115.39 115.03 116.05 0 54 28 3 0 0 0 0.59076 1 22673 22673 22.736 3.2973 1 7456400 41937 2977 27886 27903 41346 41346 0.004734882808861585 SKTKVAVLEI 10 Unmodified _SKTKVAVLEI_ 0 0 0 ENSG00000146122|ENST00000274867|DAAM2;nc|ENSG00000146122|Q86T65-4|DAAM2;DAAM2|p.P525Lfs*11|1|0.48|ENSG00000146122|chr6:39879202-39879202|C/-|frameshift_variant ENSG00000146122|ENST00000274867|DAAM2 ENSG00000146122|ENST00000274867|DAAM2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 544.3390502929688 2 544.339707 1086.66486 NaN NaN NaN NaN NaN NaN NaN 177.69 1 172.82 172.32 173.32 -4.8686 0 0 0 2.8426 1 35364 35364 0.043787 0 1 41938 4641 27887 27904 41347 41347 0.12499444716991093 SKTTSKRRGK 10 Unmodified _SKTTSKRRGK_ 0 0 0 nc|ENSG00000091436|Q9NYL2-2|MAP3K20 nc|ENSG00000091436|Q9NYL2-2|MAP3K20 nc|ENSG00000091436|Q9NYL2-2|MAP3K20 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 574.8466186523438 2 574.846553 1147.67855 NaN NaN NaN NaN NaN NaN NaN 10.506 1 9.6025 9.1025 10.102 -0.90401 0 0 0 0.22588 1 1319 1319 0 0 1 41939 12250 27888 27905 41348 41348 0.1106211526878269 SKVDEEER 8 Unmodified _SKVDEEER_ 0 0 0 nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;ENSG00000140694|ENST00000437198|PARN nc|ENSG00000140694|O95453-4|PARN nc|ENSG00000140694|O95453-4|PARN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 331.15228271484375 3 331.161211 990.461803 NaN NaN NaN NaN NaN NaN NaN 108.44 1 104.12 103.62 104.62 -4.32 0 0 0 0.21486 1 21367 21367 3.5965 0 1 41940 4321 27889 27906 41349 41349 -0.033809050754143755 SKVLSLFY 8 Unmodified _SKVLSLFY_ 0 0 0 ENST00000305752.4_1_15:38756353-38762648:+|nuORF ENST00000305752.4_1_15:38756353-38762648:+|nuORF ENST00000305752.4_1_15:38756353-38762648:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7390441894531 2 478.776211 955.537869 NaN NaN NaN NaN NaN NaN NaN 50.232 1 50.232 49.732 50.732 0 0 0 0 0.20294 1 9509 9509 23.148 1.6114 1 41941 8606 27890 27907 41350 41350 0.058321435626680795 SKVMPTLAP 9 Unmodified _SKVMPTLAP_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1799621582031 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 109.85 1 105.66 105.16 106.16 -4.1826 0 0 0 0.23508 1 21138 21138 4.897 0.36815 1 41942 6335 27891 27908 41351 41351 0.04727899685212833 SLAAADQGTRG 11 Unmodified _SLAAADQGTRG_ 0 0 0 REV__ENST00000397887.7_1_21:46270576-46270747:-|nuORF REV__ENST00000397887.7_1_21:46270576-46270747:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6791381835938 2 523.764894 1045.51524 -0.12066 -6.3199E-05 -1.0512 -0.00055058 -1.1719 -0.00061378 523.7654137777537 142.72 0.44681 138.07 137.79 138.24 -4.656 19 12 4 0 0 0 0.90423 1 28199 28199 8.9762 5.6949 1 4516700 + 41943 21317 27892 27909 41352 41352 -0.0057010757288935565 SLAAGPTAAAP 11 Unmodified _SLAAGPTAAAP_ 0 0 0 ENST00000490170.5_1_1:27674035-27676436:+|nuORF ENST00000490170.5_1_1:27674035-27676436:+|nuORF ENST00000490170.5_1_1:27674035-27676436:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2545471191406 2 463.750724 925.486896 -0.041387 -1.9193E-05 -0.25198 -0.00011686 -0.29337 -0.00013605 463.75061363579965 64.654 1.2411 61.656 61.153 62.394 -2.9975 115 35 5 0 0 0 0.48392 1 12511 12511 38.176 3.2435 1 230730000 41944 10509 27893 27910 41353 41353 0.021171945177911766 SLAAVSQQL 9 Unmodified _SLAAVSQQL_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.24200439453125 2 458.758549 915.502546 -0.052121 -2.3911E-05 0.25256 0.00011586 0.20043 9.1951E-05 458.75867187986825 96.885 0.76622 92.787 92.385 93.151 -4.0978 30 21 2 0 0 0 0.10047 1 18988 18988 62.573 14.824 1 2893400 41945 4065 27894 27911 41354 41354 0.04141481034866956 SLAAVSQQL 9 Unmodified _SLAAVSQQL_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2341613769531 2 458.758549 915.502546 -0.044607 -2.0464E-05 0.32531 0.00014924 0.2807 0.00012877 458.75861926416025 96.931 0.61519 93.012 92.612 93.228 -3.9194 29 17 2 0 0 0 0.13686 1 18588 18588 52.268 19.963 1 1618400 41946 4065 27894 27911 41355 41355 0.04141481034866956 SLADIAQKL 9 Unmodified _SLADIAQKL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000485835.1_1_17:38151035-38151804:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2378234863281 2 479.782025 957.549496 0.054725 2.6256E-05 0.0087759 4.2105E-06 0.063501 3.0467E-05 479.7819371703925 133.11 0.95695 128.26 127.85 128.8 -4.8528 71 26 4 0 0 0 0.55539 1 25527 25527 16.149 6.0752 1 21007000 41947 2466 27895 27912 41356 41356 0.06902340586009359 SLADIAQKL 9 Unmodified _SLADIAQKL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000485835.1_1_17:38151035-38151804:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2539367675781 2 479.782025 957.549496 0.16883 8.1E-05 -1.0821 -0.00051916 -0.91324 -0.00043816 479.78131239791537 133.19 1.7033 128.39 127.69 129.39 -4.799 112 47 4 0 0 0 0.13932 1 25657 25657 45.7 19.431 1 20098000 41948 2466 27895 27912 41357 41357 0.06902340586009359 SLADIAQKL 9 Unmodified _SLADIAQKL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000485835.1_1_17:38151035-38151804:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.782025 957.549496 0.010914 5.2363E-06 0.021399 1.0267E-05 0.032313 1.5503E-05 479.7819499218457 132.79 0.85303 128.15 127.77 128.62 -4.6399 -0.11887 0.00027744 NaN 45.7 70 23 4 NaN NaN NaN NaN 0 NaN NaN 0 23219000 41949 2466 27895 27912 0.06902340586009359 SLAEFPFRQ 9 Unmodified _SLAEFPFRQ_ 0 0 0 REV__nc|ENSG00000009780|Q8TAV0-5|FAM76A REV__nc|ENSG00000009780|Q8TAV0-5|FAM76A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.78759765625 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 158.68 1 158.68 158.18 159.18 0 0 0 0 0.23508 1 31861 31861 7.2892 0 1 + 41950 13912 27896 27913 41358 41358 0.012608588175226032 SLAEGIARY 9 Unmodified _SLAEGIARY_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant;CCDC168|p.A4132Qfs*29|1|0.23|ENSG00000175820|chr13:102738304-102738304|T/-|frameshift_variant;CCDC168|p.A3265Vfs*21|1|0.06|ENSG00000175820|chr13:102740903-102740904|-/GAAGAAAAATATA|frameshift_variant;CCDC168|p.L3176Ifs*8|1|0.42|ENSG00000175820|chr13:102741171-102741172|-/T|frameshift_variant;CCDC168|p.F3005Lfs*18|2|0.31|ENSG00000175820|chr13:102741682-102741682|A/-|frameshift_variant;CCDC168|p.T2792Dfs*27|1|0.25|ENSG00000175820|chr13:102742324-102742325|-/T|frameshift_variant ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2642517089844 2 490.263999 978.513445 0.064146 3.1448E-05 0.10466 5.1312E-05 0.16881 8.2761E-05 490.2640316435626 59.279 1.7152 56.368 55.784 57.5 -2.9105 129 48 4 0 0 0 0.5059 1 11542 11542 19.257 1.1106 1 42586000 41951 414 27897 27914 41359 41359 0.023328834091330464 SLAEGNLLY 9 Unmodified _SLAEGNLLY_ 0 0 0 ENST00000543590.1_1_12:123355407-123355842:-|nuORF;ENSG00000139722|ENST00000267202|VPS37B ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENST00000543590.1_1_12:123355407-123355842:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25848388671875 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 126.69 1 126.69 126.19 127.19 0 0 0 0 0.10202 1 25003 25003 37.974 7.7492 1 41952 4263 27898 27915 41360 41360 0.012100613149982564 SLAEGRPW 8 Unmodified _SLAEGRPW_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2372131347656 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 111.59 1 107.17 106.67 107.67 -4.4231 0 0 0 0.21323 1 21990 21990 14.582 1.0738 1 41953 7612 27899 27916 41361 41361 0.00036345066178000707 SLAEGRPW 8 Unmodified _SLAEGRPW_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2399597167969 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 97.124 1 93.205 92.705 93.705 -3.9194 0 0 0 0.21452 1 18641 18641 13.508 1.8676 1 41954 7612 27899 27916 41362 41362 0.00036345066178000707 SLAEPLHLV 9 Unmodified _SLAEPLHLV_ 0 0 0 REV__nc|ENSG00000138326|P62847-4|RPS24 REV__nc|ENSG00000138326|P62847-4|RPS24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26129150390625 2 489.784567 977.554582 0.27176 0.0001331 0.50728 0.00024846 0.77904 0.00038156 489.78454527432996 156.98 0.67712 152.2 151.84 152.52 -4.7885 29 18 2 0 0 0 0.25976 1 31224 31224 17.113 4.8722 1 1337700 + 41955 24059 27900 27917 41363 41363 0.06490644448615512 SLAEPRVSV 9 Unmodified _SLAEPRVSV_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7313232421875 2 479.271824 956.529095 0.037051 1.7758E-05 -0.084256 -4.0382E-05 -0.047205 -2.2624E-05 479.2717578468583 80.802 1.3274 77.245 76.429 77.757 -3.557 106 37 4 0 0 0 0.036328 1 15803 15803 93.938 46.189 1 47039000 41956 6002 27901 27918 41364 41364 0.04909169926202139 SLAEPRVSV 9 Unmodified _SLAEPRVSV_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73095703125 2 479.271824 956.529095 0.014544 6.9707E-06 -0.01607 -7.7017E-06 -0.0015251 -7.3095E-07 479.2717714875474 81.193 0.87891 77.354 76.942 77.82 -3.8392 83 24 4 0 0 0 0.022552 1 15408 15408 103.82 50.42 1 37873000 41957 6002 27901 27918 41365 41365 0.04909169926202139 SLAEPRVSV 9 Unmodified _SLAEPRVSV_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7225341796875 2 479.271824 956.529095 -0.22228 -0.00010653 0.26423 0.00012664 0.041952 2.0107E-05 479.27192091154325 81.017 1.4337 77.329 76.547 77.98 -3.6879 106 40 5 0 0 0 0.028199 1 15432 15432 103.82 43.75 1 44009000 41958 6002 27901 27918 41366 41366 0.04909169926202139 SLAEPRVSV 9 Unmodified _SLAEPRVSV_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.271824 956.529095 0.2675 0.0001282 -0.2903 -0.00013913 -0.022805 -1.093E-05 479.27165014950486 77.539 1.1398 77.539 76.839 77.979 0 0.17247 -0.00025671 NaN 103.82 96 32 4 NaN NaN NaN NaN 0 NaN NaN 0 28063000 41959 6002 27901 27918 0.04909169926202139 SLAETKPQ 8 Unmodified _SLAETKPQ_ 0 0 0 ENST00000486734.5_1_2:220072724-220073377:+|nuORF;ENST00000464902.5_1_2:220071990-220073377:+|nuORF;ENSG00000158552|ENST00000289528|ZFAND2B;ENST00000475533.1_1_2:220071990-220074025:+|nuORF ENST00000486734.5_1_2:220072724-220073377:+|nuORF ENST00000486734.5_1_2:220072724-220073377:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2359313964844 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 73.096 1 73.096 72.596 73.596 0 0 0 0 0.21452 1 14187 14187 13.508 0 1 41960 5171 27902 27919 41367 41367 0.01901505626483413 SLAFPFSF 8 Unmodified _SLAFPFSF_ 0 0 0 ENST00000327111.7_1_5:92919409-92919580:+|nuORF ENST00000327111.7_1_5:92919409-92919580:+|nuORF ENST00000327111.7_1_5:92919409-92919580:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2239685058594 2 458.234179 914.453805 -0.13044 -5.977E-05 -0.33211 -0.00015218 -0.46255 -0.00021196 458.23402448758753 84.813 0.89639 81.149 80.71 81.606 -3.6641 60 25 3 0 0 0 8448 1 16508 16508 0.68139 0 1 12788000 41961 8747 27903 27920 41368 41368 -0.006843875342269712 SLAFSLLSAA 10 Unmodified _SLAFSLLSAA_ 0 0 0 nc|ENSG00000162891|Q9NYY1-2|IL20;ENSG00000162891|ENST00000367098|IL20 nc|ENSG00000162891|Q9NYY1-2|IL20 nc|ENSG00000162891|Q9NYY1-2|IL20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27508544921875 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 149.78 1 149.78 149.28 150.28 0 0 0 0 0.20365 1 29982 29982 27.629 2.6378 1 41962 5378 27904 27921 41369 41369 0.04846938211710494 SLAFSLLSAA 10 Unmodified _SLAFSLLSAA_ 0 0 0 nc|ENSG00000162891|Q9NYY1-2|IL20;ENSG00000162891|ENST00000367098|IL20 nc|ENSG00000162891|Q9NYY1-2|IL20 nc|ENSG00000162891|Q9NYY1-2|IL20 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2763977050781 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 154.66 1 149.4 148.9 149.9 -5.2526 0 0 0 0.20365 1 29986 29986 27.629 3.6082 1 41963 5378 27904 27921 41370 41370 0.04846938211710494 SLAGGIIGV 9 Unmodified _SLAGGIIGV_ 0 0 0 ENST00000485383.1_1_3:96068520-96068997:+|nuORF;nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK ENST00000485383.1_1_3:96068520-96068997:+|nuORF ENST00000485383.1_1_3:96068520-96068997:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 394.7425842285156 2 393.739628 785.464704 -0.14205 -5.5931E-05 0.035826 1.4106E-05 -0.10622 -4.1824E-05 393.73955459301595 143.33 0.94052 138.68 138.34 139.28 -4.656 62 26 3 0 0 0 0.010733 1 28381 28381 67.187 13.119 1 31729000 41964 5599 27905 27922 41371 41371 0.0633901484004582 SLAGGIIGV 9 Unmodified _SLAGGIIGV_ 0 0 0 ENST00000485383.1_1_3:96068520-96068997:+|nuORF;nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK ENST00000485383.1_1_3:96068520-96068997:+|nuORF ENST00000485383.1_1_3:96068520-96068997:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 393.739628 785.464704 0.088649 3.4905E-05 -0.21959 -8.6463E-05 -0.13095 -5.1559E-05 393.7394684928692 143.82 1.0779 138.75 138.31 139.38 -5.0671 0.061846 -0.00020104 NaN 67.187 83 30 4 NaN NaN NaN NaN 0 NaN NaN 0 39312000 41965 5599 27905 27922 0.0633901484004582 SLAGVHIIVQD 11 Unmodified _SLAGVHIIVQD_ 0 0 0 REV__ENST00000463899.5_1_1:182781291-182795122:+|nuORF REV__ENST00000463899.5_1_1:182781291-182795122:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3319702148438 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 147.38 1 142.7 142.2 143.2 -4.6868 0 0 0 0.22209 1 29241 29241 13.615 1.3742 1 + 41966 16292 27906 27923 41372 41372 0.06533086051786086 SLAHELWKV 9 Unmodified _SLAHELWKV_ 0 0 0 nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.21697998046875 3 361.537953 1081.59203 -0.073061 -2.6414E-05 0.038853 1.4047E-05 -0.034209 -1.2368E-05 361.5379209458073 107.86 0.73048 107.86 107.51 108.24 0 49 20 3 0 0 0 0.15889 1 21190 21190 42.232 21.821 1 6992700 41967 1795 27907 27924 41373 41373 0.054497357142281544 SLAHELWKV 9 Unmodified _SLAHELWKV_ 0 0 0 nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2635498046875 2 541.803291 1081.59203 0.47892 0.00025948 -0.66413 -0.00035983 -0.18521 -0.00010035 541.802898739286 107.82 0.72874 107.82 107.55 108.28 0 33 20 2 0 0 0 0.4398 1 21203 21203 41.956 37.2 1 4392200 41968 1795 27907 27924 41374 41374 0.054497357142281544 SLAHELWKV 9 Unmodified _SLAHELWKV_ 0 0 0 nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2756958007812 2 541.803291 1081.59203 0.68779 0.00037264 -0.63589 -0.00034453 0.051894 2.8116E-05 541.802825604168 111.68 0.94244 107.45 107.04 107.99 -4.2289 42 26 2 0 0 0 0.13841 1 21516 21516 47.594 30.652 1 5051000 41969 1795 27907 27924 41375 41375 0.054497357142281544 SLAHELWKV 9 Unmodified _SLAHELWKV_ 0 0 0 nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 361.537953 1081.59203 -0.50967 -0.00018426 0.6027 0.0002179 0.09303 3.3634E-05 361.5381204890215 111.92 0.87748 107.5 107.13 108.01 -4.4231 -0.058968 0.00044472 NaN 42.232 77 24 4 NaN NaN NaN NaN 0 NaN NaN 0 14018000 41970 1795 27907 27924 0.054497357142281544 SLAHELWKV 9 Unmodified _SLAHELWKV_ 0 0 0 nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 361.537953 1081.59203 -0.048297 -1.7461E-05 0.027295 9.8683E-06 -0.021002 -7.593E-06 361.5379350291785 111.94 0.83514 107.45 107.07 107.9 -4.4915 -0.10873 -0.00017937 NaN 42.232 74 23 4 NaN NaN NaN NaN 0 NaN NaN 0 10211000 41971 1795 27907 27924 0.054497357142281544 SLAHELWKV 9 Unmodified _SLAHELWKV_ 0 0 0 nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 361.537953 1081.59203 -0.083799 -3.0297E-05 0.14112 5.102E-05 0.05732 2.0723E-05 361.53796745500637 111.65 0.80389 107.42 107.08 107.88 -4.2289 -0.13739 -5.5912E-05 NaN 42.232 68 22 4 NaN NaN NaN NaN 0 NaN NaN 0 9167400 41972 1795 27907 27924 0.054497357142281544 SLAIGIAITA 10 Unmodified _SLAIGIAITA_ 0 0 0 ENSG00000215475|ENST00000400405|SIAH3 ENSG00000215475|ENST00000400405|SIAH3 ENSG00000215475|ENST00000400405|SIAH3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2498474121094 2 465.286943 928.559333 -0.19475 -9.0613E-05 0.077768 3.6185E-05 -0.11698 -5.4429E-05 465.28690765351314 72.052 0.8518 68.741 68.318 69.169 -3.3107 64 23 4 0 0 0 0.78938 1 13974 13974 27.629 12.791 1 19114000 41973 7750 27908 27925 41376 41376 0.09219528591358994 SLAKEIQYL 9 Unmodified _SLAKEIQYL_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.261962890625 2 532.802957 1063.59136 0.087333 4.6531E-05 -0.28628 -0.00015253 -0.19895 -0.000106 532.802797161193 120.8 0.82812 120.8 120.39 121.22 0 50 22 3 0 0 0 0.045725 1 23774 23774 72.968 15.246 1 5525200 41974 3515 27909 27926 41377 41377 0.062108962745242025 SLAKEIQYL 9 Unmodified _SLAKEIQYL_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27783203125 2 532.802957 1063.59136 0.21261 0.00011328 -0.11401 -6.0747E-05 0.098598 5.2534E-05 532.8028175561213 125.03 0.81143 120.43 120.02 120.83 -4.5984 55 22 3 0 0 0 0.067911 2 24666 24615;24666 67.187 52.868 1 5976000 41975 3515 27909 27926 41378;41379 41379 0.062108962745242025 SLAKEIQYL 9 Unmodified _SLAKEIQYL_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2833251953125 2 532.802957 1063.59136 0.73071 0.00038932 -0.7864 -0.00041899 -0.05569 -2.9672E-05 532.8024693053363 125.32 0.70138 120.55 120.13 120.83 -4.7681 50 19 3 0 0 0 0.010502 3 24045 24008;24027;24045 103.42 29.373 1 4491800 41976 3515 27909 27926 41380;41381;41382 41382 0.062108962745242025 SLAKEIQYL 9 Unmodified _SLAKEIQYL_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2665405273438 2 532.802957 1063.59136 0.27648 0.00014731 -0.32796 -0.00017474 -0.051486 -2.7432E-05 532.8027986897299 125.25 0.77751 120.6 120.17 120.95 -4.6495 49 21 3 0 0 0 0.04795 4 24044 24026;24042;24044;24051 71.922 24.356 1 4827800 41977 3515 27909 27926 41383;41384;41385;41386 41385 0.062108962745242025 SLAKLLALKE 10 Unmodified _SLAKLLALKE_ 0 0 0 REV__ENST00000502677.1_1_5:80366283-80383248:+|nuORF REV__ENST00000502677.1_1_5:80366283-80383248:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.35205078125 2 543.350074 1084.6856 NaN NaN NaN NaN NaN NaN NaN 172.26 1 167.36 166.86 167.86 -4.8977 0 0 0 2.8426 1 34161 34161 0.26539 0 1 + 41978 22444 27910 27927 41387 41387 0.14664035096643602 SLALGDLLHIV 11 Unmodified _SLALGDLLHIV_ 0 0 0 EDNRB|p.Y293Ifs*3|4|0.17|ENSG00000136160|chr13:77901132-77901132|A/-|frameshift_variant;nc|ENSG00000136160|P24530-2|EDNRB;ENSG00000136160|ENST00000646607|EDNRB;nc|ENSG00000136160|P24530-3|EDNRB EDNRB|p.Y293Ifs*3|4|0.17|ENSG00000136160|chr13:77901132-77901132|A/-|frameshift_variant EDNRB|p.Y293Ifs*3|4|0.17|ENSG00000136160|chr13:77901132-77901132|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3228759765625 2 575.845156 1149.67576 0.34784 0.0002003 -2.8208 -0.0016244 -2.473 -0.0014241 575.8437155621017 148.71 0.33916 143.65 143.37 143.7 -5.0595 13 9 2 0 0 0 0.7348 1 28793 28793 9.3831 0.63772 1 2240800 41979 915 27911 27928 41388 41388 0.10690847091291289 SLALVRGTL 9 Unmodified _SLALVRGTL_ 0 0 0 REV__nc|ENSG00000101940|Q9H1Z4-2|WDR13 REV__nc|ENSG00000101940|Q9H1Z4-2|WDR13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.1512451171875 2 465.292559 928.570566 NaN NaN NaN NaN NaN NaN NaN 128.4 1 128.4 127.9 128.9 0 0 0 0 0.22251 1 25358 25358 16.942 0 1 + 41980 14811 27912 27929 41389 41389 0.10342350685516521 SLALVSKTPL 10 Unmodified _SLALVSKTPL_ 0 0 0 REV__ENST00000342784.6_1_19:15225167-15225317:+|nuORF REV__ENST00000342784.6_1_19:15225167-15225317:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.1546936035156 3 343.549859 1027.62775 -0.35368 -0.00012151 -1.8492 -0.00063529 -2.2029 -0.0007568 343.5488393828531 58.551 0.34504 55.641 55.372 55.717 -2.9105 11 9 2 0 0 0 0.91149 1 11202 11202 3.5871 2.8105 1 294560 + 41981 20725 27913 27930 41390 41390 0.11503773171239118 SLALWLLL 8 Unmodified _SLALWLLL_ 0 0 0 ENST00000182527.3_1_6:52367444-52367987:-|nuORF ENST00000182527.3_1_6:52367444-52367987:-|nuORF ENST00000182527.3_1_6:52367444-52367987:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16455078125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 149.03 1 149.03 148.53 149.53 0 0 0 0 0.2396 1 29832 29832 0.0082765 0 1 41982 8083 27914 27931 41391 41391 0.11265324322005199 SLAMIGWTHY 10 Unmodified _SLAMIGWTHY_ 0 0 0 REV__ENSG00000109182|ENST00000226432|CWH43 REV__ENSG00000109182|ENST00000226432|CWH43 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.27490234375 2 589.786784 1177.55902 0.47747 0.0002816 3.2583 0.0019217 3.7358 0.0022033 590.2914783008468 137.62 0.21071 132.69 132.58 132.79 -4.9215 7 5 2 0 0 0 0.871 1 26467 26467 10.074 3.3508 1 1044500 + 41983 15156 27915 27932 41392 41392 -0.02266214400106037 SLANFLLFY 9 Unmodified _SLANFLLFY_ 0 0 0 REV__ENST00000343666.5_1_9:140099216-140099327:-|nuORF REV__ENST00000343666.5_1_9:140099216-140099327:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7962036132812 2 544.294768 1086.57498 0.16815 9.1523E-05 0.82193 0.00044737 0.99008 0.00053889 544.7945357359898 153.61 0.17111 148.34 148.26 148.43 -5.2669 6 4 2 0 0 0 0.84208 1 29768 29768 7.2892 0 1 845300 + 41984 20735 27916 27933 41393 41393 0.03515815108426068 SLANLLGV 8 Unmodified _SLANLLGV_ 0 0 0 HRH4|p.I307N|1|0.28|ENSG00000134489|chr18:24477309-24477309|T/A|missense_variant HRH4|p.I307N|1|0.28|ENSG00000134489|chr18:24477309-24477309|T/A|missense_variant HRH4|p.I307N|1|0.28|ENSG00000134489|chr18:24477309-24477309|T/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2972717285156 2 393.739628 785.464704 -0.063268 -2.4911E-05 0.0080103 3.154E-06 -0.055258 -2.1757E-05 393.73955523239334 138.66 1.0122 138.66 138.28 139.29 0 71 28 3 0 0 0 0.74718 1 27533 27533 32.117 1.8922 1 38624000 41985 11916 27917 27934 41394 41394 0.0633901484004582 SLANNVTSV 9 Unmodified _SLANNVTSV_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2;DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7693176269531 2 452.740357 903.46616 -0.083668 -3.788E-05 0.095897 4.3417E-05 0.012229 5.5368E-06 452.74040909260174 68.467 0.96466 68.467 68.071 69.036 0 77 26 4 0 0 0 0.09885 1 13262 13262 56.177 14.337 1 41660000 41986 1282 27918 27935 41395 41395 0.010566041381594005 SLANNVTSV 9 Unmodified _SLANNVTSV_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2;DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7527160644531 2 452.740357 903.46616 -0.244 -0.00011047 0.25114 0.0001137 0.0071431 3.234E-06 452.74049468577317 71.702 1.3087 68.453 68.028 69.337 -3.2492 139 36 6 0 0 0 0.57447 1 14004 14004 14.838 5.4908 1 54593000 41987 1282 27918 27935 41396 41396 0.010566041381594005 SLANNVTSV 9 Unmodified _SLANNVTSV_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2;DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 452.740357 903.46616 0.31366 0.00014201 -0.38357 -0.00017366 -0.069906 -3.1649E-05 452.7402162207538 72.093 1.7103 68.555 67.834 69.544 -3.5385 0.054573 -0.00027465 NaN 56.177 168 48 6 NaN NaN NaN NaN 0 NaN NaN 0 50663000 41988 1282 27918 27935 0.010566041381594005 SLAPAATDE 9 Unmodified _SLAPAATDE_ 0 0 0 REV__ENST00000417886.1_1_2:24303714-24307337:-|nuORF REV__ENST00000417886.1_1_2:24303714-24307337:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2342224121094 2 437.711265 873.407977 -0.022349 -9.7822E-06 0.11978 5.243E-05 0.097434 4.2648E-05 437.71108430290417 48.6 0.28703 45.602 45.436 45.723 -2.999 12 7 2 0 0 0 0.79204 1 8844 8844 11.64 2.2929 1 297210 + 41989 21477 27919 27936 41397 41397 -0.03379077507145212 SLAPAGVIRV 10 Unmodified _SLAPAGVIRV_ 0 0 0 ENSG00000164438|ENST00000296921|TLX3 ENSG00000164438|ENST00000296921|TLX3 ENSG00000164438|ENST00000296921|TLX3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 492.28314208984375 2 491.805834 981.597115 0.17726 8.7179E-05 -0.053403 -2.6264E-05 0.12386 6.0915E-05 491.80574537980857 114.69 0.73468 114.69 114.29 115.03 0 41 20 3 0 0 0 1.0699 1 22594 22594 37.771 31.903 1 5079100 41990 5545 27920 27937 41398 41398 0.10558039576847023 SLAPAGVIRV 10 Unmodified _SLAPAGVIRV_ 0 0 0 ENSG00000164438|ENST00000296921|TLX3 ENSG00000164438|ENST00000296921|TLX3 ENSG00000164438|ENST00000296921|TLX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 492.7936096191406 2 491.805834 981.597115 0.55584 0.00027337 -0.45903 -0.00022575 0.096815 4.7614E-05 491.8055518024908 118.99 0.63925 114.38 114 114.64 -4.6106 40 17 3 0 0 0 0.36162 1 22789 22789 16.275 8.119 1 3491500 41991 5545 27920 27937 41399 41399 0.10558039576847023 SLAPAGVIRV 10 Unmodified _SLAPAGVIRV_ 0 0 0 ENSG00000164438|ENST00000296921|TLX3 ENSG00000164438|ENST00000296921|TLX3 ENSG00000164438|ENST00000296921|TLX3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 491.805834 981.597115 0.36134 0.00017771 -0.27777 -0.00013661 0.083567 4.1099E-05 491.8056331050028 118.85 0.60161 114.34 113.97 114.57 -4.502 -0.10213 -1.6863E-05 NaN 16.275 42 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5359500 41992 5545 27920 27937 0.10558039576847023 SLAPAGVIRV 10 Unmodified _SLAPAGVIRV_ 0 0 0 ENSG00000164438|ENST00000296921|TLX3 ENSG00000164438|ENST00000296921|TLX3 ENSG00000164438|ENST00000296921|TLX3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 491.805834 981.597115 0.18915 9.3023E-05 -0.23542 -0.00011578 -0.046275 -2.2759E-05 491.8057133772303 118.78 0.70164 114.37 114 114.7 -4.4088 -0.076826 2.4794E-05 NaN 16.275 48 19 3 NaN NaN NaN NaN 0 NaN NaN 0 4132600 41993 5545 27920 27937 0.10558039576847023 SLAPMRKH 8 Unmodified _SLAPMRKH_ 0 0 0 REV__MLLT6|p.G440C|1|0.08|ENSG00000275023|chr17:38716648-38716648|G/T|missense_variant REV__MLLT6|p.G440C|1|0.08|ENSG00000275023|chr17:38716648-38716648|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 470.5183410644531 2 470.263279 938.512005 NaN NaN NaN NaN NaN NaN NaN 143.45 1 138.8 138.3 139.3 -4.656 0 0 0 0.21452 1 28373 28373 13.508 1.8676 1 + 41994 19929 27921 27938 41400 41400 0.040289708393970614 SLAPSSSGYS 10 Unmodified _SLAPSSSGYS_ 0 0 0 REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1;REV__GABBR1|p.A575Sfs*2|3|0.31|ENSG00000204681|chr6:29609366-29609367|-/G|frameshift_variant REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7230529785156 2 478.221997 954.429441 -0.034571 -1.6533E-05 -1.6479 -0.00078808 -1.6825 -0.00080461 478.22100374076604 53.941 0.24043 50.846 50.687 50.928 -3.0954 9 6 2 0 0 0 0.67319 1 9973 9973 13.906 0.86358 1 705760 + 41995 19561;23557 27922 27939 41401 41401 -0.04959692478405486 SLAPTDAQI 9 Unmodified _SLAPTDAQI_ 0 0 0 REV__ENSG00000125686|ENST00000300651|MED1 REV__ENSG00000125686|ENST00000300651|MED1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.24200439453125 2 458.242732 914.470912 -0.055111 -2.5254E-05 0.1671 7.6574E-05 0.11199 5.132E-05 458.24267887886566 96.858 0.17056 92.76 92.703 92.873 -4.0978 6 4 2 0 0 0 0.46541 1 18988 18988 21.747 0 1 709140 + 41996 15823 27923 27940 41402 41402 0.010254882809135779 SLARCGRG 8 Unmodified _SLARCGRG_ 0 0 0 REV__ENSG00000111058|ENST00000548058|ACSS3 REV__ENSG00000111058|ENST00000548058|ACSS3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.11474609375 2 410.216329 818.418105 NaN NaN NaN NaN NaN NaN NaN 97.33 1 93.232 92.732 93.732 -4.0978 0 0 0 0.21486 1 19096 19096 9.3474 0 1 + 41997 15228 27924 27941 41403 41403 0.0016325173712630203 SLAREVNVVY 10 Unmodified _SLAREVNVVY_ 0 0 0 COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3250732421875 2 575.316763 1148.61897 -0.25664 -0.00014765 -1.042 -0.00059948 -1.2986 -0.00074712 575.316076608333 112.14 0.63189 107.72 107.34 107.97 -4.4231 42 17 3 0 0 0 0.40256 1 22053 22053 30.637 8.8899 1 11420000 41998 621 27925 27942 41404 41404 0.050607995347718315 SLARWQGTY 9 Unmodified _SLARWQGTY_ 0 0 0 ENSG00000187492|ENST00000412678|CDHR4;nc|ENSG00000187492|A6H8M9-2|CDHR4 ENSG00000187492|ENST00000412678|CDHR4 ENSG00000187492|ENST00000412678|CDHR4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.274169921875 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 140.12 1 135.48 134.98 135.98 -4.6439 0 0 0 0.19679 1 27665 27665 0.40827 0.14288 1 41999 7107 27926 27943 41405 41405 -0.0018031184229130304 SLASSLFPWT 10 Unmodified _SLASSLFPWT_ 0 0 0 PTCHD4|p.L94Wfs*21|1|0.4|ENSG00000244694|chr6:48068376-48068376|G/-|frameshift_variant PTCHD4|p.L94Wfs*21|1|0.4|ENSG00000244694|chr6:48068376-48068376|G/-|frameshift_variant PTCHD4|p.L94Wfs*21|1|0.4|ENSG00000244694|chr6:48068376-48068376|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 554.9054565429688 2 554.787307 1107.56006 0.31845 0.00017667 0.55253 0.00030654 0.87097 0.00048321 554.7873771806676 157.87 1.0519 157.87 157.41 158.46 0 75 29 4 0 0 0 0.664 1 31638 31638 14.838 4.7643 1 11983000 42000 12845 27927 27944 41406 41406 0.010583232404542287 SLAVDFRLVM 10 Unmodified _SLAVDFRLVM_ 0 0 0 ENST00000515683.5_2_4:100264016-100266125:-|nuORF ENST00000515683.5_2_4:100264016-100266125:-|nuORF ENST00000515683.5_2_4:100264016-100266125:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3226318359375 2 575.818084 1149.62162 0.44596 0.00025679 1.4873 0.00085641 1.9333 0.0011132 576.3211464389049 159.54 0.18398 154.27 154.13 154.31 -5.2712 6 4 2 0 0 0 0.57807 1 30951 30951 20.415 2.2682 1 1373700 42001 10790 27928 27945 41407 41407 0.05278931668067344 SLAVSSPRL 9 Unmodified _SLAVSSPRL_ 0 0 0 ENSG00000164062|ENST00000296456|APEH;ENST00000482301.1_1_3:49714104-49717481:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.258056640625 2 465.274367 928.53418 0.12738 5.9265E-05 -1.782 -0.00082911 -1.6546 -0.00076985 465.27417816202336 85.502 0.71914 85.502 85.252 85.971 0 40 19 3 0 0 0 0.67852 1 16739 16739 29.841 3.5724 1 1940900 42002 5500 27929 27946 41408 41408 0.06705473788815652 SLAVSSPRL 9 Unmodified _SLAVSSPRL_ 0 0 0 ENSG00000164062|ENST00000296456|APEH;ENST00000482301.1_1_3:49714104-49717481:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25897216796875 2 465.274367 928.53418 -0.15009 -6.9835E-05 -0.53624 -0.0002495 -0.68633 -0.00031933 465.2743722417541 89.23 0.77493 85.438 84.983 85.757 -3.7926 46 21 3 0 0 0 0.07738 2 17416 17416;17470 62.573 14.227 1 1955200 42003 5500 27929 27946 41409;41410 41409 0.06705473788815652 SLAVSSPRL 9 Unmodified _SLAVSSPRL_ 0 0 0 ENSG00000164062|ENST00000296456|APEH;ENST00000482301.1_1_3:49714104-49717481:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2590026855469 2 465.274367 928.53418 0.20543 9.5583E-05 -0.57742 -0.00026866 -0.37198 -0.00017307 465.2742335571337 89.146 0.81264 85.396 84.953 85.766 -3.7501 53 22 3 0 0 0 0.11219 1 17071 17071 51.63 13.454 1 2436600 42004 5500 27929 27946 41411 41411 0.06705473788815652 SLAVSSPRL 9 Unmodified _SLAVSSPRL_ 0 0 0 ENSG00000164062|ENST00000296456|APEH;ENST00000482301.1_1_3:49714104-49717481:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.274367 928.53418 0.35563 0.00016547 -0.78185 -0.00036378 -0.42622 -0.00019831 465.27408471112705 89.409 0.70032 85.365 85.034 85.734 -4.0443 -0.060246 -2.44E-05 NaN 62.573 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2889100 42005 5500 27929 27946 0.06705473788815652 SLAWPRGE 8 Unmodified _SLAWPRGE_ 0 0 0 REV__ENST00000563666.1_1_16:29808338-29810113:+|nuORF REV__ENST00000563666.1_1_16:29808338-29810113:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2257080078125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 62.303 1 62.303 61.803 62.803 0 0 0 0 0.23107 1 11965 11965 0.12286 0 1 + 42006 14399 27930 27947 41412 41412 0.0003634506618936939 SLAYTLEKNL 10 Unmodified _SLAYTLEKNL_ 0 0 0 ATP10A|p.A982T|1|0.14|ENSG00000206190|chr15:25694963-25694963|C/T|missense_variant ATP10A|p.A982T|1|0.14|ENSG00000206190|chr15:25694963-25694963|C/T|missense_variant ATP10A|p.A982T|1|0.14|ENSG00000206190|chr15:25694963-25694963|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3186645507812 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 116.63 1 116.63 116.13 117.13 0 0 0 0 2.8426 1 22968 22968 0.063865 0 1 42007 260 27931 27948 41413 41413 0.054102639576967704 SLCAGGLLW 9 Unmodified _SLCAGGLLW_ 0 0 0 REV__ENST00000461318.1_1_1:24668655-24669644:+|nuORF REV__ENST00000461318.1_1_1:24668655-24669644:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2399597167969 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 72.193 1 68.882 68.382 69.382 -3.3107 0 0 0 0.18489 1 14069 14069 17.113 2.2746 1 + 42008 21894 27932 27949 41414 41414 0.000830574796395922 SLCCCCRWCC 10 Unmodified _SLCCCCRWCC_ 0 0 0 nc|ENSG00000011021|P51797-4|CLCN6;nc|ENSG00000011021|P51797-2|CLCN6;nc|ENSG00000011021|P51797-3|CLCN6;CLCN6|p.C430Vfs*73|1|0.64|ENSG00000011021|chr1:11833548-11833548|T/-|frameshift_variant;nc|ENSG00000011021|P51797-6|CLCN6;ENSG00000011021|ENST00000346436|CLCN6;nc|ENSG00000011021|P51797-5|CLCN6 nc|ENSG00000011021|P51797-4|CLCN6 nc|ENSG00000011021|P51797-4|CLCN6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.276611328125 2 590.18837 1178.36219 NaN NaN NaN NaN NaN NaN NaN 171.59 1 171.59 171.09 172.09 0 0 0 0 0.22588 1 35364 35364 0.40072 0 1 42009 569 27933 27950 41415 41415 -0.21985868144520282 SLCCCCRWCC 10 Unmodified _SLCCCCRWCC_ 0 0 0 nc|ENSG00000011021|P51797-4|CLCN6;nc|ENSG00000011021|P51797-2|CLCN6;nc|ENSG00000011021|P51797-3|CLCN6;CLCN6|p.C430Vfs*73|1|0.64|ENSG00000011021|chr1:11833548-11833548|T/-|frameshift_variant;nc|ENSG00000011021|P51797-6|CLCN6;ENSG00000011021|ENST00000346436|CLCN6;nc|ENSG00000011021|P51797-5|CLCN6 nc|ENSG00000011021|P51797-4|CLCN6 nc|ENSG00000011021|P51797-4|CLCN6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2528076171875 2 590.18837 1178.36219 NaN NaN NaN NaN NaN NaN NaN 140.29 1 135.44 134.94 135.94 -4.8492 0 0 0 0.22588 1 27049 27049 1.6526 0.17072 1 42010 569 27933 27950 41416 41416 -0.21985868144520282 SLCCSSCFDCL 11 Unmodified _SLCCSSCFDCL_ 0 0 0 REV__ENST00000469442.5_1_2:86014100-86014427:+|nuORF REV__ENST00000469442.5_1_2:86014100-86014427:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2483520507812 2 590.710713 1179.40687 0.18532 0.00010947 -0.18708 -0.00011051 -0.0017636 -1.0418E-06 590.7121908142037 126.92 0.17233 122.22 122.15 122.32 -4.6998 5 4 2 0 0 0 0.96084 1 24431 24431 1.3295 0.80477 1 584530 + 42011 22011 27934 27951 41417 41417 -0.17565442525847175 SLCFKGWC 8 Unmodified _SLCFKGWC_ 0 0 0 REV__ENST00000282541.9_1_3:32207403-32207541:+|nuORF REV__ENST00000282541.9_1_3:32207403-32207541:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.07440185546875 3 315.14367 942.40918 NaN NaN NaN NaN NaN NaN NaN 132.97 1 128.11 127.61 128.61 -4.8527 0 0 0 0.21486 1 25541 25541 0.45834 0 1 + 42012 20315 27935 27952 41418 41418 -0.06432857943582349 SLCLEEQLI 9 Unmodified _SLCLEEQLI_ 0 0 0 REV__nc|ENSG00000158089|Q96FL9-2|GALNT14 REV__nc|ENSG00000158089|Q96FL9-2|GALNT14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6832275390625 2 524.273175 1046.5318 -0.52576 -0.00027564 0.47017 0.00024649 -0.055595 -2.9147E-05 524.2736253171163 107.26 1.1725 102.85 102.09 103.27 -4.4121 51 33 2 0 0 0 0.84208 1 20459 20459 1.6526 0 1 13017000 + 42013 17322 27936 27953 41419 41419 0.01039257268826077 SLCLEEQLI 9 Unmodified _SLCLEEQLI_ 0 0 0 REV__nc|ENSG00000158089|Q96FL9-2|GALNT14 REV__nc|ENSG00000158089|Q96FL9-2|GALNT14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.273175 1046.5318 0.76217 0.00039959 -0.46299 -0.00024273 0.29918 0.00015685 524.2729426642165 106.98 0.92953 102.85 102.22 103.15 -4.135 -0.0001849 -0.00037355 NaN 1.6526 43 26 2 NaN NaN NaN NaN 0 NaN NaN 0 11622000 + 42014 17322 27936 27953 0.01039257268826077 SLCLRGVGIFS 11 Unmodified _SLCLRGVGIFS_ 0 0 0 ENST00000521786.5_1_5:153597671-153599037:+|nuORF ENST00000521786.5_1_5:153597671-153599037:+|nuORF ENST00000521786.5_1_5:153597671-153599037:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3157958984375 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 122.99 1 122.99 122.49 123.49 0 0 0 0 0.22765 1 24240 24240 10.151 0 1 42015 10854 27937 27954 41420 41420 0.047580475252971155 SLCQLLDRF 9 Unmodified _SLCQLLDRF_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7872314453125 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 141.71 1 141.71 141.21 142.21 0 0 0 0 0.23277 1 28245 28245 13.906 1.3745 1 42016 6631 27938 27955 41421 41421 0.015977855998698942 SLCRCPKL 8 Unmodified _SLCRCPKL_ 0 0 0 nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-2|FLII MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24615478515625 2 460.24624 918.477928 NaN NaN NaN NaN NaN NaN NaN 114.76 1 114.76 114.26 115.26 0 0 0 0 0.21452 1 22577 22577 13.508 0.97634 1 42017 6535 27939 27956 41422 41422 0.015428063561216732 SLCRCPKL 8 Unmodified _SLCRCPKL_ 0 0 0 nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-2|FLII MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24737548828125 2 460.24624 918.477928 NaN NaN NaN NaN NaN NaN NaN 160.64 1 155.41 154.91 155.91 -5.2299 0 0 0 0.21486 1 31196 31196 4.756 0 1 42018 6535 27939 27956 41423 41423 0.015428063561216732 SLCRCPKL 8 Unmodified _SLCRCPKL_ 0 0 0 nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-2|FLII MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24554443359375 2 460.24624 918.477928 NaN NaN NaN NaN NaN NaN NaN 92.196 1 88.388 87.888 88.888 -3.8083 0 0 0 0.21486 1 17663 17663 12.532 0.89125 1 42019 6535 27939 27956 41424 41424 0.015428063561216732 SLCSVAAKRF 10 Unmodified _SLCSVAAKRF_ 0 0 0 REV__ENST00000254508.6_1_3:13358231-13358375:-|nuORF REV__ENST00000254508.6_1_3:13358231-13358375:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2842407226562 2 541.294776 1080.575 NaN NaN NaN NaN NaN NaN NaN 154.74 1 154.74 154.24 155.24 0 0 0 0 0.22588 1 31014 31014 10.074 0.6908 1 + 42020 20120 27940 27957 41425 41425 0.03793491836768226 SLCVLQAW 8 Unmodified _SLCVLQAW_ 0 0 0 ENSG00000171798|ENST00000304613|KNDC1;KNDC1|p.R1318W|1|0.3|ENSG00000171798|chr10:133211465-133211465|C/T|missense_variant ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23870849609375 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 63.941 1 60.944 60.444 61.444 -2.9975 0 0 0 0.22692 1 12361 12361 1.7423 0 1 42021 6171 27941 27958 41426 41426 0.0008305747962822352 SLCWDEEV 8 Unmodified _SLCWDEEV_ 0 0 0 REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26861572265625 2 490.705125 979.395698 NaN NaN NaN NaN NaN NaN NaN 155.17 1 149.88 149.38 150.38 -5.2854 0 0 0 0.23749 1 30096 30096 0.0082765 0 1 + 42022 19534 27942 27959 41427 41427 -0.09482437241831576 SLCYCESCW 9 Unmodified _SLCYCESCW_ 0 0 0 NEURL4|p.R1372W|1|0.46|ENSG00000215041|chr17:7317879-7317879|G/A|missense_variant NEURL4|p.R1372W|1|0.46|ENSG00000215041|chr17:7317879-7317879|G/A|missense_variant NEURL4|p.R1372W|1|0.46|ENSG00000215041|chr17:7317879-7317879|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7681274414062 2 547.193013 1092.37147 0.23293 0.00012746 -0.45885 -0.00025108 -0.22592 -0.00012362 547.6933873373631 127.52 0.60355 122.82 122.46 123.07 -4.6998 36 16 3 0 0 0 0.8319 1 24518 24518 7.9102 0 1 4730000 42023 12684 27943 27960 41428 41428 -0.17101736991367034 SLDALERL 8 Unmodified _SLDALERL_ 0 0 0 REV__ENSG00000129646|ENST00000680821|QRICH2 REV__ENSG00000129646|ENST00000680821|QRICH2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23876953125 2 458.758549 915.502546 -0.37381 -0.00017149 1.8257 0.00083757 1.4519 0.00066608 458.7607208504294 105.3 2.3813 101.03 100.22 102.6 -4.2638 96 67 3 0 0 0 0.34033 1 20981 20981 46.921 0 1 941540 + 42024 15968 27944 27961 41429 41429 0.04141481034866956 SLDCHISQY 9 Unmodified _SLDCHISQY_ 0 0 0 ENSG00000186185|ENST00000593135|KIF18B;KIF18B|p.G393Efs*91|1|0.13|ENSG00000186185|chr17:44932733-44932733|C/-|frameshift_variant;KIF18B|p.C684Afs*66|1|0.21|ENSG00000186185|chr17:44928253-44928253|G/-|frameshift_variant;nc|ENSG00000186185|Q86Y91-6|KIF18B ENSG00000186185|ENST00000593135|KIF18B ENSG00000186185|ENST00000593135|KIF18B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825927734375 2 533.237124 1064.45969 -0.084327 -4.4966E-05 -0.55401 -0.00029542 -0.63834 -0.00034038 533.2372856746562 82.172 0.41449 78.482 78.356 78.77 -3.6908 15 11 2 0 0 0 0.62921 1 15723 15723 30.637 7.4881 1 1227300 42025 7041 27945 27962 41430 41430 -0.06995657084871709 SLDDPSLAIL 10 Unmodified _SLDDPSLAIL_ 0 0 0 nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9 nc|ENSG00000185792|Q7RTR0-2|NLRP9 nc|ENSG00000185792|Q7RTR0-2|NLRP9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2825317382812 2 522.284597 1042.55464 NaN NaN NaN NaN NaN NaN NaN 53.485 1 50.397 49.897 50.897 -3.0876 0 0 0 0.22588 1 9846 9846 10.074 1.4806 1 42026 7012 27946 27963 41431 41431 0.03506599657953302 SLDDSAKKV 9 Unmodified _SLDDSAKKV_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000527290.1_1_11:74660330-74676171:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2326965332031 2 481.761289 961.508025 -0.0093035 -4.4821E-06 0.085454 4.1168E-05 0.07615 3.6686E-05 481.76130003601975 20.835 0.38546 20.835 20.632 21.017 0 17 10 2 0 0 0 0.48307 1 3456 3456 27.223 0 1 1335600 42027 3030 27947 27964 41432 41432 0.02573159826670235 SLDDSAKKV 9 Unmodified _SLDDSAKKV_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000527290.1_1_11:74660330-74676171:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7868957519531 2 481.761289 961.508025 0.63983 0.00030825 -0.81039 -0.00039041 -0.17056 -8.2169E-05 481.7609357888497 22.197 0.38563 20.723 20.519 20.905 -1.4742 15 10 2 0 0 0 0.17734 1 3784 3784 40.239 2.2652 1 755160 42028 3030 27947 27964 41433 41433 0.02573159826670235 SLDDSAKKV 9 Unmodified _SLDDSAKKV_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000527290.1_1_11:74660330-74676171:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.233154296875 2 481.761289 961.508025 -0.64561 -0.00031103 0.7082 0.00034118 0.062586 3.0151E-05 481.7615237036299 22.418 0.24342 20.629 20.503 20.747 -1.7886 11 6 2 0 0 0 0.80264 1 3548 3548 17.113 17.113 1 302210 42029 3030 27947 27964 41434 41434 0.02573159826670235 SLDDYSLLDY 10 Unmodified _SLDDYSLLDY_ 0 0 0 REV__nc|ENSG00000180336|A2RUB1-1|MEIOC REV__nc|ENSG00000180336|A2RUB1-1|MEIOC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2753295898438 2 602.274426 1202.5343 NaN NaN NaN NaN NaN NaN NaN 39.445 1 39.445 38.945 39.945 0 0 0 0 0.22544 1 7322 7322 19.257 0 1 + 42030 18683 27948 27965 41435 41435 -0.05886615792496741 SLDEIPEL 8 Unmodified _SLDEIPEL_ 0 0 0 tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1 tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1 tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23797607421875 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 134.59 1 129.95 129.45 130.45 -4.6399 0 0 0 0.21452 1 26543 26543 13.508 0 1 42031 26006 27949 27966 41436 41436 -0.0009733381323258072 SLDEKPRI 8 Unmodified _SLDEKPRI_ 0 0 0 nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1 nc|ENSG00000120694|Q92598-3|HSPH1 nc|ENSG00000120694|Q92598-3|HSPH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2518615722656 2 479.271824 956.529095 0.2675 0.0001282 -0.2903 -0.00013913 -0.022805 -1.093E-05 479.27165014950486 77.539 1.1398 77.539 76.839 77.979 0 96 32 4 0 0 0 0.69887 1 15098 15098 14.582 0 1 28063000 42032 3147 27950 27967 41437 41437 0.04909169926202139 SLDELHRKY 9 Unmodified _SLDELHRKY_ 0 0 0 ENST00000488733.1_1_1:116916118-116927596:+|nuORF;ATP1A1|p.F100Sfs*41|2|0.35|ENSG00000163399|chr1:116387396-116387396|G/-|frameshift_variant;nc|ENSG00000163399|P05023-2|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1 ENST00000488733.1_1_1:116916118-116927596:+|nuORF ENST00000488733.1_1_1:116916118-116927596:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7121887207031 3 387.540134 1159.59857 -0.60588 -0.0002348 1.2929 0.00050106 0.68703 0.00026625 387.5404101494998 37.2 0.30614 34.732 34.535 34.841 -2.4688 16 8 3 0 0 0 0.84094 1 6877 6877 6.1918 3.5606 1 444970 42033 264 27951 27968 41438 41438 0.025156288749712985 SLDELHRKY 9 Unmodified _SLDELHRKY_ 0 0 0 ENST00000488733.1_1_1:116916118-116927596:+|nuORF;ATP1A1|p.F100Sfs*41|2|0.35|ENSG00000163399|chr1:116387396-116387396|G/-|frameshift_variant;nc|ENSG00000163399|P05023-2|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1 ENST00000488733.1_1_1:116916118-116927596:+|nuORF ENST00000488733.1_1_1:116916118-116927596:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 387.540134 1159.59857 0.093118 3.6087E-05 0.35491 0.00013754 0.44803 0.00017363 387.54025705323465 37.22 0.26838 34.872 34.655 34.923 -2.3479 0.1152 -0.00033814 NaN 6.1918 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 402110 42034 264 27951 27968 0.025156288749712985 SLDELHRKY 9 Unmodified _SLDELHRKY_ 0 0 0 ENST00000488733.1_1_1:116916118-116927596:+|nuORF;ATP1A1|p.F100Sfs*41|2|0.35|ENSG00000163399|chr1:116387396-116387396|G/-|frameshift_variant;nc|ENSG00000163399|P05023-2|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1 ENST00000488733.1_1_1:116916118-116927596:+|nuORF ENST00000488733.1_1_1:116916118-116927596:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 387.540134 1159.59857 -0.39638 -0.00015361 0.65392 0.00025342 0.25754 9.9807E-05 387.5402947903439 37.004 0.45988 34.667 34.486 34.946 -2.3375 -0.089992 9.4915E-06 NaN 6.1918 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 235310 42035 264 27951 27968 0.025156288749712985 SLDFHLIV 8 Unmodified _SLDFHLIV_ 0 0 0 nc|ENSG00000182271|Q6UXZ0-2|TMIGD1;ENSG00000182271|ENST00000328886|TMIGD1 nc|ENSG00000182271|Q6UXZ0-2|TMIGD1 nc|ENSG00000182271|Q6UXZ0-2|TMIGD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1798400878906 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 97.589 1 93.491 92.991 93.991 -4.0978 0 0 0 0.21486 1 19152 19152 1.6526 0 1 42036 6780 27952 27969 41439 41439 0.04390972902865542 SLDFPAPVQI 10 Unmodified _SLDFPAPVQI_ 0 0 0 REV__ENSG00000111816|ENST00000606080|FRK REV__ENSG00000111816|ENST00000606080|FRK MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79638671875 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 160.27 1 155.04 154.54 155.54 -5.2299 0 0 0 0.22588 1 31116 31116 9.3831 2.66 1 + 42037 15264 27953 27970 41440 41440 0.03634609757477847 SLDFVARLILI 11 Unmodified _SLDFVARLILI_ 0 0 0 REV__ENSG00000232268|ENST00000530443|OR52I1 REV__ENSG00000232268|ENST00000530443|OR52I1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7642211914062 2 630.389731 1258.76491 0.37807 0.00023833 0.1466 9.2412E-05 0.52466 0.00033074 630.3897907806488 104.8 0.61685 100.45 100.08 100.69 -4.346 33 17 3 0 0 0 0.96036 1 20038 20038 8.1555 5.4203 1 3193100 + 42038 19751 27954 27971 41441 41441 0.1458768205081924 SLDGIVRL 8 Unmodified _SLDGIVRL_ 0 0 0 ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF;ENSG00000127837|ENST00000248450|AAMP ENST00000494720.5_1_2:219129258-219130297:-|nuORF ENST00000494720.5_1_2:219129258-219130297:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2320556640625 2 436.763635 871.512717 0.0036039 1.5741E-06 0.017333 7.5706E-06 0.020937 9.1446E-06 436.76361100498457 132.93 0.75525 128.08 127.74 128.49 -4.8527 29 20 2 0 0 0 0.36038 1 25590 25590 34.102 5.6156 1 1468000 42039 3492 27955 27972 41442 41442 0.071820887600893 SLDGIVRL 8 Unmodified _SLDGIVRL_ 0 0 0 ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF;ENSG00000127837|ENST00000248450|AAMP ENST00000494720.5_1_2:219129258-219130297:-|nuORF ENST00000494720.5_1_2:219129258-219130297:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2171936035156 2 436.763635 871.512717 0.018074 7.8942E-06 0.046583 2.0346E-05 0.064658 2.824E-05 436.76361127245184 132.97 0.67393 128.18 127.83 128.5 -4.799 33 18 2 0 0 0 0.07389 2 25609 25546;25609 71.134 18.865 1 1174000 42040 3492 27955 27972 41443;41444 41444 0.071820887600893 SLDGIVRL 8 Unmodified _SLDGIVRL_ 0 0 0 ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF;ENSG00000127837|ENST00000248450|AAMP ENST00000494720.5_1_2:219129258-219130297:-|nuORF ENST00000494720.5_1_2:219129258-219130297:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.763635 871.512717 -0.14586 -6.3706E-05 0.17232 7.5263E-05 0.026461 1.1557E-05 436.76371623678415 132.57 0.60733 127.93 127.73 128.33 -4.6399 -0.13159 8.5243E-05 NaN 71.134 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1913600 42041 3492 27955 27972 0.071820887600893 SLDGKAIKV 9 Unmodified _SLDGKAIKV_ 0 0 0 ENST00000456392.1_1_X:65176624-65176924:-|nuORF;nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENSG00000170748|ENST00000306904|RBMXL2 ENST00000456392.1_1_X:65176624-65176924:-|nuORF ENST00000456392.1_1_X:65176624-65176924:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2465515136719 2 465.784567 929.554582 0.012387 5.7695E-06 0.011355 5.289E-06 0.023742 1.1059E-05 465.78449508081076 53.002 0.49182 49.915 49.619 50.111 -3.0876 30 13 3 0 0 0 0.58395 1 9736 9736 34.932 9.5328 1 3752300 42042 4696 27956 27973 41445 41445 0.08698644448600135 SLDGKAIKV 9 Unmodified _SLDGKAIKV_ 0 0 0 ENST00000456392.1_1_X:65176624-65176924:-|nuORF;nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENSG00000170748|ENST00000306904|RBMXL2 ENST00000456392.1_1_X:65176624-65176924:-|nuORF ENST00000456392.1_1_X:65176624-65176924:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 465.784567 929.554582 -0.25666 -0.00011955 0.18744 8.7306E-05 -0.06922 -3.2242E-05 465.7846305263433 52.665 0.40889 49.781 49.556 49.965 -2.8837 -0.13404 0.0002368 NaN 53.404 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3520500 42043 4696 27956 27973 0.08698644448600135 SLDGLLRV 8 Unmodified _SLDGLLRV_ 0 0 0 REV__ENST00000377716.6_1_9:37903591-37903951:-|nuORF REV__ENST00000377716.6_1_9:37903591-37903951:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2330322265625 2 436.763635 871.512717 NaN NaN NaN NaN NaN NaN NaN 132.2 1 127.56 127.06 128.06 -4.6399 0 0 0 0.21171 1 26057 26057 15.847 0 1 + 42044 21105 27957 27974 41446 41446 0.071820887600893 SLDGRQIRV 9 Unmodified _SLDGRQIRV_ 0 0 0 ENST00000489344.5_1_X:48433563-48435471:+|nuORF;ENST00000466764.5_1_X:48434327-48435471:+|nuORF;ENSG00000102317|ENST00000376759|RBM3 ENST00000489344.5_1_X:48433563-48435471:+|nuORF ENST00000489344.5_1_X:48433563-48435471:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.8188171386719 3 348.536724 1042.58834 -0.43988 -0.00015331 0.37601 0.00013105 -0.063868 -2.226E-05 348.53678787698607 56.157 0.71735 53.262 52.933 53.65 -2.8944 48 20 3 0 0 0 0.58921 1 10704 10704 2.6312 0 1 6715200 42045 2126 27958 27975 41447 41447 0.06875065940380409 SLDIQNVK 8 Unmodified _SLDIQNVK_ 0 0 0 ZDHHC13|p.W358Lfs*13|1|0.28|ENSG00000177054|chr11:19158998-19158999|-/T|frameshift_variant;nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;ENSG00000177054|ENST00000446113|ZDHHC13 ZDHHC13|p.W358Lfs*13|1|0.28|ENSG00000177054|chr11:19158998-19158999|-/T|frameshift_variant ZDHHC13|p.W358Lfs*13|1|0.28|ENSG00000177054|chr11:19158998-19158999|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.238037109375 2 458.758549 915.502546 -0.12645 -5.801E-05 0.75056 0.00034433 0.62411 0.00028632 458.7588528678719 82.44 0.489 78.741 78.587 79.076 -3.6985 15 13 2 0 0 0 0.81042 1 15745 15745 16.942 0 1 439020 42046 6495 27959 27976 41448 41448 0.041414810348555875 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2764892578125 2 490.276575 978.538597 0.19247 9.4366E-05 -0.15521 -7.6096E-05 0.037263 1.8269E-05 490.2763969812373 144.96 0.86562 144.96 144.61 145.48 0 37 24 2 0 0 0 0.0070869 2 28999 28952;28999 110.79 38.87 1 4469700 42047 7174 27960 27977 41449;41450 41450 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2682189941406 2 490.276575 978.538597 0.21366 0.00010475 0.06333 3.1049E-05 0.27699 0.0001358 490.27649445774387 149.26 0.91293 144.53 144.13 145.04 -4.7323 46 25 2 0 0 0 0.024872 4 29674 29607;29658;29674;29708 87.258 14.19 1 3647500 42048 7174 27960 27977 41451;41452;41453;41454 41453 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.276611328125 2 490.276575 978.538597 0.22365 0.00010965 -0.16423 -8.0519E-05 0.059413 2.9129E-05 490.2766040142273 149.87 0.69859 144.67 144.29 144.99 -5.1994 29 19 2 0 0 0 0.024872 3 28996 28996;29043;29094 87.258 20.802 1 2282200 42049 7174 27960 27977 41455;41456;41457 41455 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2631530761719 2 490.276575 978.538597 0.10829 5.3093E-05 0.52756 0.00025865 0.63585 0.00031174 490.27682959190247 149.81 0.82458 144.69 144.28 145.11 -5.1204 39 22 2 0 0 0 0.022252 4 28998 28977;28998;29021;29070 90.135 21.931 1 2429700 42050 7174 27960 27977 41458;41459;41460;41461 41459 0.04846938211710494 SLDKKLVL 8 Unmodified _SLDKKLVL_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant;nc|ENSG00000170776|Q12802-5|AKAP13;AKAP13|p.T565Qfs*18|1|0.46|ENSG00000170776|chr15:85579756-85579756|A/-|frameshift_variant;AKAP13|p.F990Lfs*18|1|0.38|ENSG00000170776|chr15:85581035-85581038|CTTT/-|frameshift_variant;AKAP13|p.T1197Hfs*9|1|0.33|ENSG00000170776|chr15:85581652-85581653|-/C|frameshift_variant nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23858642578125 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 52.512 1 49.628 49.128 50.128 -2.8837 0 0 0 0.21486 1 9994 9994 9.3474 0 1 42051 12458 27961 27978 41462 41462 0.11936118971038923 SLDKQKKKTK 10 Unmodified _SLDKQKKKTK_ 0 0 0 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENST00000556425.2_1_15:21937379-21938108:-|nuORF;PAK2|p.S330Hfs*6|1|0.39|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;PAK2|p.S371Vfs*67|1|0.31|ENSG00000180370|chr3:196818111-196818111|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2 PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.27880859375 2 602.374612 1202.73467 NaN NaN NaN NaN NaN NaN NaN 44.777 1 41.987 41.487 42.487 -2.79 0 0 0 0.22588 1 8420 8420 6.7232 0 1 42052 12751 27962 27979 41463 41463 0.14141323385615578 SLDKSNLNA 9 Unmodified _SLDKSNLNA_ 0 0 0 REV__ELL2|p.K468Nfs*8|1|0.32|ENSG00000118985|chr5:95898361-95898361|T/-|frameshift_variant REV__ELL2|p.K468Nfs*8|1|0.32|ENSG00000118985|chr5:95898361-95898361|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2366943359375 2 481.251089 960.487624 0.17368 8.3586E-05 -0.022723 -1.0935E-05 0.15096 7.265E-05 481.25107001108034 26.451 0.34968 24.816 24.616 24.966 -1.6347 17 9 2 0 0 0 0.5428 1 4417 4417 4.897 4.833 1 861280 + 42053 13802 27963 27980 41464 41464 0.005799891668516466 SLDKYDDIL 9 Unmodified _SLDKYDDIL_ 0 0 0 ENST00000376946.2_1_10:22209591-22217997:-|nuORF ENST00000376946.2_1_10:22209591-22217997:-|nuORF ENST00000376946.2_1_10:22209591-22217997:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2682495117188 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 145.63 1 140.63 140.13 141.13 -5 0 0 0 0.23508 1 28165 28165 13.042 0.80181 1 42054 9257 27964 27981 41465 41465 -0.0031399072172462184 SLDLDSNPLL 10 Unmodified _SLDLDSNPLL_ 0 0 0 MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant;nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;nc|ENSG00000184313|Q68CQ1-4|MROH7;nc|ENSG00000184313|Q68CQ1-8|MROH7;nc|ENSG00000184313|Q68CQ1-2|MROH7 MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7882690429688 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 118.43 1 113.82 113.32 114.32 -4.6106 0 0 0 2.8426 1 22723 22723 0.51642 0 1 42055 6903 27965 27982 41466 41466 0.02109698169647345 SLDLLTAVTI 10 Unmodified _SLDLLTAVTI_ 0 0 0 ENSG00000131050|ENST00000354932|BPIFA2 ENSG00000131050|ENST00000354932|BPIFA2 ENSG00000131050|ENST00000354932|BPIFA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6964721679688 2 523.310615 1044.60668 0.22962 0.00012016 -0.61768 -0.00032324 -0.38806 -0.00020308 523.8117189515649 130.83 0.41678 126.06 125.87 126.29 -4.7725 14 11 2 0 0 0 0.81109 1 25195 25195 24.021 9.1823 1 1853500 42056 3658 27966 27983 41467 41467 0.08615763071702531 SLDLPSRCA 9 Unmodified _SLDLPSRCA_ 0 0 0 nc|ENSG00000197050|Q8TAQ5-2|ZNF420;ZNF420|p.K361Nfs*214|1|0.5|ENSG00000197050|chr19:37128070-37128070|A/-|frameshift_variant;ENSG00000197050|ENST00000337995|ZNF420 nc|ENSG00000197050|Q8TAQ5-2|ZNF420 nc|ENSG00000197050|Q8TAQ5-2|ZNF420 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 321.16497802734375 3 321.163898 960.469866 NaN NaN NaN NaN NaN NaN NaN 63.871 1 60.455 59.955 60.955 -3.4158 0 0 0 0.23508 1 11943 11943 1.1933 0.41681 1 42057 7323 27967 27984 41468 41468 -0.011950493596486922 SLDLVELSLY 10 Unmodified _SLDLVELSLY_ 0 0 0 REV__LRIG1|p.H868Qfs*44|1|0.18|ENSG00000144749|chr3:66382276-66382286|TGCTCTCAATG/-|frameshift_variant REV__LRIG1|p.H868Qfs*44|1|0.18|ENSG00000144749|chr3:66382276-66382286|TGCTCTCAATG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3363037109375 2 576.313354 1150.61216 NaN NaN NaN NaN NaN NaN NaN 107.08 1 107.08 106.58 107.58 0 0 0 0 0.22576 1 21056 21056 14.838 0 1 + 42058 16801 27968 27985 41469 41469 0.04287441863539243 SLDNGGLRSY 10 Unmodified _SLDNGGLRSY_ 0 0 0 ENST00000519856.1_1_8:48424103-48424298:-|nuORF ENST00000519856.1_1_8:48424103-48424298:-|nuORF ENST00000519856.1_1_8:48424103-48424298:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2662963867188 2 541.26727 1080.51999 0.21854 0.00011829 -1.1167 -0.00060444 -0.89818 -0.00048615 541.2654463695 93.656 1.0031 89.665 89.243 90.246 -3.9907 100 28 5 0 0 0 0.13946 1 18278 18278 49.933 9.9833 1 31712000 42059 10825 27969 27986 41470 41470 -0.017052234301445424 SLDNGGLRSY 10 Unmodified _SLDNGGLRSY_ 0 0 0 ENST00000519856.1_1_8:48424103-48424298:-|nuORF ENST00000519856.1_1_8:48424103-48424298:-|nuORF ENST00000519856.1_1_8:48424103-48424298:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2653198242188 2 541.26727 1080.51999 0.2683 0.00014522 -1.3077 -0.00070779 -1.0394 -0.00056257 541.2653217461133 93.841 0.92825 89.698 89.245 90.173 -4.1435 106 26 5 0 0 0 0.63858 1 17953 17953 17.113 1.2657 1 34526000 42060 10825 27969 27986 41471 41471 -0.017052234301445424 SLDPFLVG 8 Unmodified _SLDPFLVG_ 0 0 0 REV__ENST00000354309.4_1_19:57752145-57759996:+|nuORF REV__ENST00000354309.4_1_19:57752145-57759996:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2351379394531 2 424.231636 846.448719 0.066965 2.8409E-05 0.31796 0.00013489 0.38492 0.0001633 424.23170557293673 143.5 1.985 138.47 137.51 139.5 -5.0261 105 56 3 0 0 0 0.72861 1 27704 27704 10.183 0 1 7598700 + 42061 20776 27970 27987 41472 41472 0.019353086031628663 SLDPFLVG 8 Unmodified _SLDPFLVG_ 0 0 0 REV__ENST00000354309.4_1_19:57752145-57759996:+|nuORF REV__ENST00000354309.4_1_19:57752145-57759996:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2354736328125 2 424.231636 846.448719 0.0097104 4.1195E-06 0.35083 0.00014883 0.36054 0.00015295 424.2317242179217 143.27 1.6919 138.38 137.52 139.21 -4.8982 98 47 3 0 0 0 0.69887 1 27688 27688 14.582 0 1 5612400 + 42062 20776 27970 27987 41473 41473 0.019353086031628663 SLDPILSY 8 Unmodified _SLDPILSY_ 0 0 0 REV__ENST00000486234.1_1_2:74754275-74754965:-|nuORF REV__ENST00000486234.1_1_2:74754275-74754965:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7645568847656 2 454.242201 906.469849 NaN NaN NaN NaN NaN NaN NaN 67.05 1 63.942 63.442 64.442 -3.1086 0 0 0 0.21486 1 13002 13002 9.3474 0 1 + 42063 22235 27971 27988 41474 41474 0.012872739119984544 SLDQQVQE 8 Unmodified _SLDQQVQE_ 0 0 0 REV__ANK2|p.F3753L|1|0.42|ENSG00000145362|chr4:113367792-113367792|C/A|missense_variant REV__ANK2|p.F3753L|1|0.42|ENSG00000145362|chr4:113367792-113367792|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.1542663574219 3 316.154056 945.44034 NaN NaN NaN NaN NaN NaN NaN 176.07 1 171.28 170.78 171.78 -4.7898 0 0 0 0.21486 1 36001 36001 1.6526 0 1 + 42064 13046 27972 27989 41475 41475 -0.03456290104122672 SLDRDDEP 8 Unmodified _SLDRDDEP_ 0 0 0 REV__PATL1|p.P327Lfs*21|1|0.08|ENSG00000166889|chr11:59655574-59655575|-/TAGTTTTATAA|frameshift_variant REV__PATL1|p.P327Lfs*21|1|0.08|ENSG00000166889|chr11:59655574-59655575|-/TAGTTTTATAA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.1544494628906 3 316.141928 945.403954 -0.34555 -0.00010924 -1.2495 -0.00039502 -1.5951 -0.00050427 316.141503922997 98.22 0.62856 98.22 97.984 98.613 0 27 17 2 0 0 0 1.0278 1 19301 19301 0.35063 0.35063 1 1823000 + 42065 17886 27973 27990 41476 41476 -0.07093167000846279 SLDRDDEP 8 Unmodified _SLDRDDEP_ 0 0 0 REV__PATL1|p.P327Lfs*21|1|0.08|ENSG00000166889|chr11:59655574-59655575|-/TAGTTTTATAA|frameshift_variant REV__PATL1|p.P327Lfs*21|1|0.08|ENSG00000166889|chr11:59655574-59655575|-/TAGTTTTATAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 316.141928 945.403954 -0.31083 -9.8265E-05 -1.303 -0.00041194 -1.6138 -0.0005102 316.14149540659713 102.54 0.70815 98.352 98.027 98.736 -4.1861 -0.0023493 0.00012572 NaN 0.35063 38 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2477200 + 42066 17886 27973 27990 -0.07093167000846279 SLDRDDEP 8 Unmodified _SLDRDDEP_ 0 0 0 REV__PATL1|p.P327Lfs*21|1|0.08|ENSG00000166889|chr11:59655574-59655575|-/TAGTTTTATAA|frameshift_variant REV__PATL1|p.P327Lfs*21|1|0.08|ENSG00000166889|chr11:59655574-59655575|-/TAGTTTTATAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 316.141928 945.403954 0.2864 9.0542E-05 -1.8555 -0.00058661 -1.5691 -0.00049607 316.1412999945636 102.73 0.76374 98.408 98.08 98.843 -4.3208 0.053802 -0.0003983 NaN 0.35063 34 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3971500 + 42067 17886 27973 27990 -0.07093167000846279 SLDRDDEP 8 Unmodified _SLDRDDEP_ 0 0 0 REV__PATL1|p.P327Lfs*21|1|0.08|ENSG00000166889|chr11:59655574-59655575|-/TAGTTTTATAA|frameshift_variant REV__PATL1|p.P327Lfs*21|1|0.08|ENSG00000166889|chr11:59655574-59655575|-/TAGTTTTATAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 316.141928 945.403954 -0.16241 -5.1346E-05 -1.3441 -0.00042492 -1.5065 -0.00047626 316.1414395827822 102.46 0.65639 98.437 98.114 98.77 -4.0212 0.082465 8.6785E-05 NaN 0.35063 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3341400 + 42068 17886 27973 27990 -0.07093167000846279 SLDRHFWR 8 Unmodified _SLDRHFWR_ 0 0 0 REV__ENST00000543744.1_1_12:7060600-7060895:+|nuORF REV__ENST00000543744.1_1_12:7060600-7060895:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 373.12481689453125 3 372.86143 1115.56246 -0.45545 -0.00016982 -0.038614 -1.4398E-05 -0.49406 -0.00018422 372.86106599304685 53.424 0.51989 50.541 50.283 50.803 -2.8837 24 14 2 0 0 0 1.0248 1 10141 10141 1.4819 1.2461 1 827660 + 42069 15255 27974 27991 41477 41477 0.009302164887458275 SLDRHRRVL 9 Unmodified _SLDRHRRVL_ 0 0 0 REV__ENST00000533685.1_1_11:64900480-64900579:-|nuORF REV__ENST00000533685.1_1_11:64900480-64900579:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3394775390625 2 576.341438 1150.66832 NaN NaN NaN NaN NaN NaN NaN 113.01 1 108.56 108.06 109.06 -4.4539 0 0 0 0.23508 1 22266 22266 7.9102 1.187 1 + 42070 22798 27975 27992 41478 41478 0.0990155233423593 SLDRKLLEL 9 Unmodified _SLDRKLLEL_ 0 0 0 ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5 ENST00000521386.5_1_8:67958045-67971691:-|nuORF ENST00000521386.5_1_8:67958045-67971691:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.778564453125 2 543.829506 1085.64446 0.47746 0.00025966 -0.54543 -0.00029662 -0.067969 -3.6964E-05 543.8290233349995 119.49 0.38158 115.03 114.88 115.27 -4.467 14 10 2 0 0 0 0.35556 2 23008 23008;23012 19.362 10.241 1 1061700 42071 3164 27976 27993 41479;41480 41479 0.10506274057183873 SLDRRERGR 9 Unmodified _SLDRRERGR_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.L612Pfs*8|1|0.29|ENSG00000113360|chr5:31493214-31493215|-/G|frameshift_variant;DROSHA|p.E310Sfs*42|1|0.42|ENSG00000113360|chr5:31521143-31521143|T/-|frameshift_variant nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 382.21380615234375 3 382.214643 1143.6221 NaN NaN NaN NaN NaN NaN NaN 107.47 1 103.06 102.56 103.56 -4.4121 0 0 0 0.23508 1 20621 20621 4.1895 0.24511 1 42072 2738 27977 27994 41481 41481 0.0560348743213126 SLDSPGGS 8 Unmodified _SLDSPGGS_ 0 0 0 ENST00000264607.8_1_2:239353020-239353245:+|nuORF ENST00000264607.8_1_2:239353020-239353245:+|nuORF ENST00000264607.8_1_2:239353020-239353245:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.0291442871094 2 360.163951 718.313348 NaN NaN NaN NaN NaN NaN NaN 134.05 1 129.24 128.74 129.74 -4.8175 0 0 0 0.21486 1 25809 25809 2.3027 0 1 42073 8341 27978 27995 41482 41482 -0.057075912584537036 SLDSRVREV 9 Unmodified _SLDSRVREV_ 0 0 0 ENSG00000091844|ENST00000206262|RGS17;nc|ENSG00000147509|O76081-4|RGS20;nc|ENSG00000147509|O76081-3|RGS20;nc|ENSG00000147509|O76081-5|RGS20;nc|ENSG00000147509|O76081-6|RGS20;nc|ENSG00000147509|O76081-2|RGS20;ENSG00000147509|ENST00000297313|RGS20 ENSG00000091844|ENST00000206262|RGS17 ENSG00000091844|ENST00000206262|RGS17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 354.210693359375 3 354.196367 1059.56727 -0.63374 -0.00022447 0.66138 0.00023426 0.027638 9.7894E-06 354.196631868351 41.377 0.59984 38.887 38.6 39.2 -2.4896 45 16 4 0 0 0 0.27464 1 7428 7428 37.075 22.088 1 3491200 42074 1817 27979 27996 41483 41483 0.0398705584086656 SLDSRVREV 9 Unmodified _SLDSRVREV_ 0 0 0 ENSG00000091844|ENST00000206262|RGS17;nc|ENSG00000147509|O76081-4|RGS20;nc|ENSG00000147509|O76081-3|RGS20;nc|ENSG00000147509|O76081-5|RGS20;nc|ENSG00000147509|O76081-6|RGS20;nc|ENSG00000147509|O76081-2|RGS20;ENSG00000147509|ENST00000297313|RGS20 ENSG00000091844|ENST00000206262|RGS17 ENSG00000091844|ENST00000206262|RGS17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 354.196367 1059.56727 -0.16358 -5.794E-05 0.10404 3.685E-05 -0.059545 -2.109E-05 354.19639747338107 38.801 0.45649 38.801 38.567 39.024 0 -0.035633 -0.00026342 NaN 37.075 34 12 4 NaN NaN NaN NaN 0 NaN NaN 0 5846900 42075 1817 27979 27996 0.0398705584086656 SLDSRVREV 9 Unmodified _SLDSRVREV_ 0 0 0 ENSG00000091844|ENST00000206262|RGS17;nc|ENSG00000147509|O76081-4|RGS20;nc|ENSG00000147509|O76081-3|RGS20;nc|ENSG00000147509|O76081-5|RGS20;nc|ENSG00000147509|O76081-6|RGS20;nc|ENSG00000147509|O76081-2|RGS20;ENSG00000147509|ENST00000297313|RGS20 ENSG00000091844|ENST00000206262|RGS17 ENSG00000091844|ENST00000206262|RGS17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 354.196367 1059.56727 -0.45634 -0.00016163 0.56006 0.00019837 0.10372 3.6738E-05 354.1965591668279 41.486 0.58215 38.851 38.571 39.153 -2.6348 0.013964 0.00022115 NaN 37.075 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4364300 42076 1817 27979 27996 0.0398705584086656 SLDSRVREV 9 Unmodified _SLDSRVREV_ 0 0 0 ENSG00000091844|ENST00000206262|RGS17;nc|ENSG00000147509|O76081-4|RGS20;nc|ENSG00000147509|O76081-3|RGS20;nc|ENSG00000147509|O76081-5|RGS20;nc|ENSG00000147509|O76081-6|RGS20;nc|ENSG00000147509|O76081-2|RGS20;ENSG00000147509|ENST00000297313|RGS20 ENSG00000091844|ENST00000206262|RGS17 ENSG00000091844|ENST00000206262|RGS17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 354.196367 1059.56727 -0.043302 -1.5337E-05 0.029979 1.0618E-05 -0.013323 -4.719E-06 354.1964189211254 41.46 0.48719 38.809 38.514 39.001 -2.651 -0.028408 -0.00034211 NaN 37.075 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4640400 42077 1817 27979 27996 0.0398705584086656 SLDSVEALL 9 Unmodified _SLDSVEALL_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.T595Lfs*44|1|0.28|ENSG00000197694|chr9:128582823-128582823|A/-|frameshift_variant nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1757507324219 3 316.174569 945.501877 NaN NaN NaN NaN NaN NaN NaN 149.7 1 144.5 144 145 -5.1994 0 0 0 0.23508 1 28997 28997 1.0715 0 1 42078 7390 27980 27997 41484 41484 0.026946415951556446 SLDSVQRALY 10 Unmodified _SLDSVQRALY_ 0 0 0 ZNF620|p.E67Gfs*25|1|0.35|ENSG00000177842|chr3:40512445-40512446|-/G|frameshift_variant;ENSG00000177842|ENST00000314529|ZNF620 ZNF620|p.E67Gfs*25|1|0.35|ENSG00000177842|chr3:40512445-40512446|-/G|frameshift_variant ZNF620|p.E67Gfs*25|1|0.35|ENSG00000177842|chr3:40512445-40512446|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33642578125 2 576.306395 1150.59824 NaN NaN NaN NaN NaN NaN NaN 98.494 1 94.537 94.037 95.037 -3.9564 0 0 0 0.19895 1 18903 18903 28.495 1.6109 1 42079 6542 27981 27998 41485 41485 0.028962091551193225 SLDTCECPDHI 11 Unmodified _SLDTCECPDHI_ 0 0 0 CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant;ENSG00000160161|ENST00000291495|CILP2 CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1076965332031 3 411.502251 1231.48492 NaN NaN NaN NaN NaN NaN NaN 139.94 1 135.29 134.79 135.79 -4.6439 0 0 0 0.23698 1 27627 27627 0.45452 0 1 42080 561 27982 27999 41486 41486 -0.12155970344633715 SLDVCHQI 8 Unmodified _SLDVCHQI_ 0 0 0 ENST00000420737.1_1:146011237-146016889:+|nuORF ENST00000420737.1_1:146011237-146016889:+|nuORF ENST00000420737.1_1:146011237-146016889:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.24090576171875 2 457.723652 913.432752 -0.29555 -0.00013528 1.3002 0.00059515 1.0047 0.00045987 457.72422273365225 112.67 0.62795 108.22 107.84 108.47 -4.4539 25 17 2 0 0 0 0.66265 1 22183 22183 18.135 0 1 1362600 42081 9661 27983 28000 41487 41487 -0.027427209054053492 SLDVSAPKV 9 Unmodified _SLDVSAPKV_ 0 0 0 AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant;AHNAK2|p.D4448Gfs*6|1|0.2|ENSG00000185567|chr14:104942108-104942109|-/C|frameshift_variant;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant;AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2386169433594 2 458.260925 914.507297 0.12235 5.607E-05 -0.044559 -2.042E-05 0.077794 3.565E-05 458.2608333299838 84.514 0.80345 80.605 80.178 80.981 -3.9093 35 22 2 0 0 0 0.30618 2 16085 16030;16085 31.268 12.011 1 1510100 42082 104 27984 28001 41488;41489 41489 0.04662365177625816 SLDWHPNNV 9 Unmodified _SLDWHPNNV_ 0 0 0 ENSG00000241685|ENST00000262942|ARPC1A;ENST00000597698.1_1_19:53507635-53507983:+|nuORF;ENST00000484600.6_1_7:98983337-98987636:+|nuORF;ENST00000484375.5_1_7:98972330-98988614:+|nuORF;nc|ENSG00000241685|Q92747-2|ARPC1A;ENSG00000130429|ENST00000646101|ARPC1B ENSG00000241685|ENST00000262942|ARPC1A ENSG00000241685|ENST00000262942|ARPC1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2837524414062 2 541.256705 1080.49886 0.1904 0.00010306 -1.8749 -0.0010148 -1.6845 -0.00091177 541.2565233985027 92.46 0.52406 88.534 88.303 88.827 -3.9251 32 14 3 0 0 0 0.58395 1 18116 18116 28.495 0 1 1920300 42083 7855 27985 28002 41490 41490 -0.03817188739003541 SLDWHQPL 8 Unmodified _SLDWHQPL_ 0 0 0 REV__CDC42BPA|p.P1709Qfs*56|1|0.09|ENSG00000143776|chr1:226994341-226994341|G/-|frameshift_variant REV__CDC42BPA|p.P1709Qfs*56|1|0.09|ENSG00000143776|chr1:226994341-226994341|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 498.2500915527344 2 498.250892 994.48723 NaN NaN NaN NaN NaN NaN NaN 99.1 1 94.831 94.331 95.331 -4.2692 0 0 0 0.1742 1 18946 18946 4.2837 3.8754 1 + 42084 13341 27986 28003 41491 41491 -0.010233857623461518 SLDWSHLC 8 Unmodified _SLDWSHLC_ 0 0 0 REV__ENST00000392455.7_2_3:191109610-191109739:+|nuORF REV__ENST00000392455.7_2_3:191109610-191109739:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2522277832031 2 480.715827 959.417102 0.029566 1.4213E-05 1.0546 0.00050697 1.0842 0.00052118 480.7161946550705 134.25 0.69955 129.61 129.14 129.84 -4.6399 36 19 2 0 0 0 0.40661 3 26433 26433;26478;26486 32.117 13.982 1 1939900 + 42085 21220 27987 28004 41492;41493;41494 41492 -0.06423007422461069 SLDWSHLC 8 Unmodified _SLDWSHLC_ 0 0 0 REV__ENST00000392455.7_2_3:191109610-191109739:+|nuORF REV__ENST00000392455.7_2_3:191109610-191109739:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2311096191406 2 480.715827 959.417102 0.070879 3.4073E-05 1.0193 0.00048998 1.0901 0.00052405 480.7162705562654 134.39 0.62657 129.52 129.2 129.82 -4.8726 29 17 2 0 0 0 0.53444 1 25818 25818 26.341 12.833 1 1806600 + 42086 21220 27987 28004 41495 41495 -0.06423007422461069 SLDWSHLC 8 Unmodified _SLDWSHLC_ 0 0 0 REV__ENST00000392455.7_2_3:191109610-191109739:+|nuORF REV__ENST00000392455.7_2_3:191109610-191109739:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24658203125 2 480.715827 959.417102 0.15766 7.5791E-05 1.0488 0.00050419 1.2065 0.00057998 480.71624172095676 134.45 0.66592 129.63 129.2 129.86 -4.8175 30 18 2 0 0 0 0.40661 1 25856 25856 32.117 8.9685 1 1718700 + 42087 21220 27987 28004 41496 41496 -0.06423007422461069 SLDWSHLC 8 Unmodified _SLDWSHLC_ 0 0 0 REV__ENST00000392455.7_2_3:191109610-191109739:+|nuORF REV__ENST00000392455.7_2_3:191109610-191109739:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.715827 959.417102 -0.019532 -9.3894E-06 1.6391 0.00078793 1.6195 0.00077854 480.71637420059716 129.53 0.47673 129.53 129.16 129.64 0 -0.047192 0.00046438 NaN 32.117 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1232300 + 42088 21220 27987 28004 -0.06423007422461069 SLDWSHLC 8 Unmodified _SLDWSHLC_ 0 0 0 REV__ENST00000392455.7_2_3:191109610-191109739:+|nuORF REV__ENST00000392455.7_2_3:191109610-191109739:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.715827 959.417102 0.070879 3.4073E-05 1.0193 0.00048998 1.0901 0.00052405 480.7162705562654 134.39 0.62657 129.52 129.2 129.82 -4.8726 -0.050686 -0.00013153 NaN 32.117 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1806600 + 42089 21220 27987 28004 -0.06423007422461069 SLDYCLYESG 10 Unmodified _SLDYCLYESG_ 0 0 0 REV__NRXN3|p.R369Vfs*8|1|0.3|ENSG00000021645|chr14:78803793-78803793|G/-|frameshift_variant REV__NRXN3|p.R369Vfs*8|1|0.3|ENSG00000021645|chr14:78803793-78803793|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3140869140625 2 575.242072 1148.46959 0.50587 0.000291 0.65839 0.00037873 1.1643 0.00066973 575.242420399462 106.63 1.0503 106.63 106.19 107.24 0 91 29 4 0 0 0 0.59928 1 20908 20908 19.257 3.4098 1 31325000 + 42090 13985 27988 28005 41497 41497 -0.09870513870168907 SLDYCVTR 8 Unmodified _SLDYCVTR_ 0 0 0 REV__ENSG00000171631|ENST00000540124|P2RY6 REV__ENSG00000171631|ENST00000540124|P2RY6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7430419921875 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 108.78 1 104.4 103.9 104.9 -4.3776 0 0 0 0.20896 1 21437 21437 18.135 0 1 + 42091 18237 27989 28006 41498 41498 -0.03618738250986553 SLEAIVQN 8 Unmodified _SLEAIVQN_ 0 0 0 KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant;ENSG00000186432|ENST00000334256|KPNA4 KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant KPNA4|p.M441Wfs*9|1|0.12|ENSG00000186432|chr3:160508158-160508158|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2275390625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 60.983 1 60.983 60.483 61.483 0 0 0 0 0.21039 1 11699 11699 16.942 2.3606 1 42092 7056 27990 28007 41499 41499 0.019015056264720442 SLEALPTPE 9 Unmodified _SLEALPTPE_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2;TSPYL2|p.S127Afs*20|2|0.38|ENSG00000184205|chrX:53082870-53082870|G/-|frameshift_variant ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7430114746094 2 478.75039 955.486227 NaN NaN NaN NaN NaN NaN NaN 149.4 1 144.67 144.17 145.17 -4.7323 0 0 0 0.22251 1 29673 29673 16.942 0 1 42093 6894 27991 28008 41500 41500 0.006703550780912337 SLEATQQP 8 Unmodified _SLEATQQP_ 0 0 0 REV__LHX9|p.P345Rfs*18|1|0.21|ENSG00000143355|chr1:197929096-197929096|C/-|frameshift_variant REV__LHX9|p.P345Rfs*18|1|0.21|ENSG00000143355|chr1:197929096-197929096|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21954345703125 2 437.219257 872.423961 0.14514 6.3457E-05 -1.0133 -0.00044304 -0.86818 -0.00037959 437.2185900101604 63.901 0.35029 60.486 60.354 60.704 -3.4158 11 9 2 0 0 0 8448 1 11965 11965 0.62683 0.37535 1 415990 + 42094 23796 27992 28009 41501 41501 -0.01735371270228825 SLEATQQP 8 Unmodified _SLEATQQP_ 0 0 0 REV__LHX9|p.P345Rfs*18|1|0.21|ENSG00000143355|chr1:197929096-197929096|C/-|frameshift_variant REV__LHX9|p.P345Rfs*18|1|0.21|ENSG00000143355|chr1:197929096-197929096|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21905517578125 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 45.165 1 42.3 41.8 42.8 -2.8653 0 0 0 0.23749 1 8194 8194 0.0082765 0 1 + 42095 23796 27992 28009 41502 41502 -0.01735371270228825 SLEDDWDF 8 Unmodified _SLEDDWDF_ 0 0 0 CALR|p.P264Qfs*2|1|0.3|ENSG00000179218|chr19:12940625-12940625|C/-|frameshift_variant;ENSG00000179218|ENST00000316448|CALR CALR|p.P264Qfs*2|1|0.3|ENSG00000179218|chr19:12940625-12940625|C/-|frameshift_variant CALR|p.P264Qfs*2|1|0.3|ENSG00000179218|chr19:12940625-12940625|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 513.2526245117188 2 513.70618 1025.39781 NaN NaN NaN NaN NaN NaN NaN 116.62 1 116.62 116.12 117.12 0 0 0 0 0.23366 1 22965 22965 0.12286 0 1 42096 370 27993 28010 41503 41503 -0.11387685232375588 SLEDDYGYCE 10 Unmodified _SLEDDYGYCE_ 0 0 0 REV__tr|U7SWN0|U7SWN0_FUSNUDUF4037domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01106PE=4SV=1 REV__tr|U7SWN0|U7SWN0_FUSNUDUF4037domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01106PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 398.17657470703125 3 398.481621 1192.42303 -0.38419 -0.00015309 -0.36829 -0.00014676 -0.75249 -0.00029985 398.4811524428705 38.857 0.49176 36.452 36.198 36.69 -2.4049 28 13 3 0 0 0 1.1335 1 6900 6900 0.043787 0 1 1392400 + 42097 25204 27994 28011 41504 41504 -0.16547998492114857 SLEDWLCCEY 10 Unmodified _SLEDWLCCEY_ 0 0 0 ENSG00000188305|ENST00000342063|PEAK3 ENSG00000188305|ENST00000342063|PEAK3 ENSG00000188305|ENST00000342063|PEAK3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7489013671875 2 630.749207 1259.48386 NaN NaN NaN NaN NaN NaN NaN 111.72 1 107.3 106.8 107.8 -4.4231 0 0 0 0.22588 1 22016 22016 10.824 0.75 1 42098 7159 27995 28012 41505 41505 -0.13550184713494673 SLEDWLCCEY 10 Unmodified _SLEDWLCCEY_ 0 0 0 ENSG00000188305|ENST00000342063|PEAK3 ENSG00000188305|ENST00000342063|PEAK3 ENSG00000188305|ENST00000342063|PEAK3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7498168945312 2 630.749207 1259.48386 NaN NaN NaN NaN NaN NaN NaN 167.1 1 162.31 161.81 162.81 -4.7898 0 0 0 0.22588 1 33657 33657 6.7232 0 1 42099 7159 27995 28012 41506 41506 -0.13550184713494673 SLEDWLCCEY 10 Unmodified _SLEDWLCCEY_ 0 0 0 ENSG00000188305|ENST00000342063|PEAK3 ENSG00000188305|ENST00000342063|PEAK3 ENSG00000188305|ENST00000342063|PEAK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7747192382812 2 630.749207 1259.48386 0.42255 0.00026653 -2.3443 -0.0014787 -1.9217 -0.0012121 631.24836530049 160.82 0.13869 155.59 155.51 155.65 -5.2299 5 3 2 0 0 0 0.744 1 31228 31228 6.7232 1.4263 1 2008400 42100 7159 27995 28012 41507 41507 -0.13550184713494673 SLEDWLCCEY 10 Unmodified _SLEDWLCCEY_ 0 0 0 ENSG00000188305|ENST00000342063|PEAK3 ENSG00000188305|ENST00000342063|PEAK3 ENSG00000188305|ENST00000342063|PEAK3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7748413085938 2 630.749207 1259.48386 NaN NaN NaN NaN NaN NaN NaN 147.56 1 142.4 141.9 142.9 -5.1557 0 0 0 0.22588 1 28556 28556 6.7232 0 1 42101 7159 27995 28012 41508 41508 -0.13550184713494673 SLEDWLCCEY 10 Unmodified _SLEDWLCCEY_ 0 0 0 ENSG00000188305|ENST00000342063|PEAK3 ENSG00000188305|ENST00000342063|PEAK3 ENSG00000188305|ENST00000342063|PEAK3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7605590820312 2 630.749207 1259.48386 NaN NaN NaN NaN NaN NaN NaN 172.65 1 167.77 167.27 168.27 -4.881 0 0 0 2.8426 1 34286 34286 0.063865 0.050599 1 42102 7159 27995 28012 41509 41509 -0.13550184713494673 SLEECAAFQP 10 Unmodified _SLEECAAFQP_ 0 0 0 ENSG00000136114|ENST00000258613|THSD1 ENSG00000136114|ENST00000258613|THSD1 ENSG00000136114|ENST00000258613|THSD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7675170898438 2 547.744782 1093.47501 NaN NaN NaN NaN NaN NaN NaN 158.52 1 153.72 153.22 154.22 -4.7952 0 0 0 0.22588 1 31523 31523 10.074 2.1638 1 42103 3984 27996 28013 41510 41510 -0.06798790287689371 SLEGGQEPV 9 Unmodified _SLEGGQEPV_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF nc|ENSG00000166473|Q7Z442|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2394714355469 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 83.144 1 79.536 79.036 80.036 -3.6079 0 0 0 0.21065 1 16252 16252 20.454 2.3186 1 42104 12440 27997 28014 41511 41511 -0.026113886158100286 SLEGLEVAP 9 Unmodified _SLEGLEVAP_ 0 0 0 nc|ENSG00000183837|Q9UL41-2|PNMA3;ENSG00000183837|ENST00000593810|PNMA3 nc|ENSG00000183837|Q9UL41-2|PNMA3 nc|ENSG00000183837|Q9UL41-2|PNMA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23828125 2 457.745108 913.475663 0.71341 0.00032656 -0.45159 -0.00020671 0.26181 0.00011984 457.7448567375448 106.54 1.2422 102.45 101.71 102.95 -4.0913 75 35 3 0 0 0 0.035055 1 20460 20460 77.984 6.8507 1 14460000 42105 6874 27998 28015 41512 41512 0.015463724236724374 SLEGTLNDI 9 Unmodified _SLEGTLNDI_ 0 0 0 REV__ENSG00000169851|ENST00000695919|PCDH7 REV__ENSG00000169851|ENST00000695919|PCDH7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7301330566406 2 481.245472 960.476391 0.29519 0.00014206 -0.40736 -0.00019604 -0.11217 -5.3981E-05 481.2452674009798 100.13 1.2189 95.834 95.417 96.636 -4.297 121 35 5 0 0 0 0.12369 1 19071 19071 14.987 6.0736 1 194490000 + 42106 18120 27999 28016 41513 41513 -0.0054283292729451205 SLEHGLDIY 9 Unmodified _SLEHGLDIY_ 0 0 0 REV__DAB2IP|p.R615H|1|0.38|ENSG00000136848|chr9:121768578-121768578|G/A|missense_variant REV__DAB2IP|p.R615H|1|0.38|ENSG00000136848|chr9:121768578-121768578|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6793823242188 2 523.761289 1045.50803 -0.17439 -9.1337E-05 0.12615 6.6074E-05 -0.048234 -2.5263E-05 523.7613527876783 93.518 0.72244 89.527 89.175 89.897 -3.9907 40 20 3 0 0 0 0.16442 1 18287 18287 42.095 11.87 1 3603300 + 42107 13634 28000 28017 41514 41514 -0.012908401733284336 SLEHGLDIY 9 Unmodified _SLEHGLDIY_ 0 0 0 REV__DAB2IP|p.R615H|1|0.38|ENSG00000136848|chr9:121768578-121768578|G/A|missense_variant REV__DAB2IP|p.R615H|1|0.38|ENSG00000136848|chr9:121768578-121768578|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6773681640625 2 523.761289 1045.50803 -0.17439 -9.1337E-05 0.12615 6.6074E-05 -0.048234 -2.5263E-05 523.7613527876783 93.518 0.72244 89.527 89.175 89.897 -3.9907 40 20 3 0 0 0 0.74655 1 18380 18380 10.824 1.4408 1 3603300 + 42108 13634 28000 28017 41515 41515 -0.012908401733284336 SLEHGLDIY 9 Unmodified _SLEHGLDIY_ 0 0 0 REV__DAB2IP|p.R615H|1|0.38|ENSG00000136848|chr9:121768578-121768578|G/A|missense_variant REV__DAB2IP|p.R615H|1|0.38|ENSG00000136848|chr9:121768578-121768578|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.761289 1045.50803 0.048474 2.5389E-05 0.014098 7.384E-06 0.062572 3.2773E-05 523.7613635470884 89.648 0.49557 89.648 89.281 89.777 0 0.088982 9.6984E-05 NaN 42.095 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2840300 + 42109 13634 28000 28017 -0.012908401733284336 SLEIKIIKQ 9 Unmodified _SLEIKIIKQ_ 0 0 0 REV__ENSG00000240720|ENST00000458448|LRRD1 REV__ENSG00000240720|ENST00000458448|LRRD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.82965087890625 3 357.897258 1070.66995 -0.22865 -8.1832E-05 0.26064 9.3283E-05 0.031997 1.1452E-05 357.8973134470262 30.353 1.6453 30.353 29.955 31.6 0 73 46 2 0 0 0 0.8799 1 5493 5493 0.20686 0 1 1350500 + 42110 19782 28001 28018 41516 41516 0.1374374857962266 SLEIQFCEYE 10 Unmodified _SLEIQFCEYE_ 0 0 0 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7725219726562 2 630.776279 1259.538 NaN NaN NaN NaN NaN NaN NaN 140.44 1 140.44 139.94 140.94 0 0 0 0 0.22588 1 27962 27962 5.7319 1.7875 1 + 42111 15389 28002 28019 41517 41517 -0.08138269290316202 SLEIWLGYVT 10 Unmodified _SLEIWLGYVT_ 0 0 0 ENSG00000184571|ENST00000616349|PIWIL3;nc|ENSG00000184571|Q7Z3Z3|PIWIL3 ENSG00000184571|ENST00000616349|PIWIL3 ENSG00000184571|ENST00000616349|PIWIL3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.259765625 2 590.816064 1179.61758 0.35974 0.00021254 2.8209 0.0016666 3.1806 0.0018792 591.3205295750524 166.39 0.10135 166.39 166.3 166.4 0 4 2 2 0 0 0 0.85223 1 33873 33873 8.7454 2.5396 1 16897000 42112 6919 28003 28020 41518 41518 0.03495165445974635 SLEKEIIDQW 10 Unmodified _SLEKEIIDQW_ 0 0 0 REV__ENSG00000113569|ENST00000231498|NUP155 REV__ENSG00000113569|ENST00000231498|NUP155 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7799682617188 2 630.82716 1259.63977 NaN NaN NaN NaN NaN NaN NaN 166.34 1 166.34 165.84 166.84 0 0 0 0 0.22544 1 33872 33872 19.257 1.1106 1 + 42113 15347 28004 28021 41519 41519 0.020333451237547706 SLEKFWEWWEE 11 Unmodified _SLEKFWEWWEE_ 0 0 0 ENST00000497314.1_1_1:150934548-150935668:+|nuORF ENST00000497314.1_1_1:150934548-150935668:+|nuORF ENST00000497314.1_1_1:150934548-150935668:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6793823242188 3 523.573392 1567.69835 NaN NaN NaN NaN NaN NaN NaN 95.205 1 91.014 90.514 91.514 -4.1911 0 0 0 0.23698 1 18166 18166 1.3296 0.21989 1 42114 10588 28005 28022 41520 41520 -0.06279598301739497 SLEKRYIA 8 Unmodified _SLEKRYIA_ 0 0 0 ACER3|p.G58S|1|0.13|ENSG00000078124|chr11:76926625-76926625|G/A|missense_variant ACER3|p.G58S|1|0.13|ENSG00000078124|chr11:76926625-76926625|G/A|missense_variant ACER3|p.G58S|1|0.13|ENSG00000078124|chr11:76926625-76926625|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2658386230469 2 490.282192 978.549831 0.37078 0.00018179 -0.56423 -0.00027663 -0.19345 -9.4843E-05 490.28201553139513 116.09 0.61252 111.51 111.22 111.84 -4.5815 38 17 3 0 0 0 0.56049 1 22313 22313 24.674 5.2349 1 2477100 42115 33 28006 28023 41521 41521 0.05969760305845284 SLEKRYIA 8 Unmodified _SLEKRYIA_ 0 0 0 ACER3|p.G58S|1|0.13|ENSG00000078124|chr11:76926625-76926625|G/A|missense_variant ACER3|p.G58S|1|0.13|ENSG00000078124|chr11:76926625-76926625|G/A|missense_variant ACER3|p.G58S|1|0.13|ENSG00000078124|chr11:76926625-76926625|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 490.282192 978.549831 0.16635 8.1556E-05 -0.17223 -8.4444E-05 -0.0058887 -2.8871E-06 490.28205087120296 115.97 0.65967 111.49 111.17 111.83 -4.486 -0.063948 8.8993E-05 NaN 24.674 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3598300 42116 33 28006 28023 0.05969760305845284 SLEKRYIA 8 Unmodified _SLEKRYIA_ 0 0 0 ACER3|p.G58S|1|0.13|ENSG00000078124|chr11:76926625-76926625|G/A|missense_variant ACER3|p.G58S|1|0.13|ENSG00000078124|chr11:76926625-76926625|G/A|missense_variant ACER3|p.G58S|1|0.13|ENSG00000078124|chr11:76926625-76926625|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 490.282192 978.549831 0.25769 0.00012634 -0.086445 -4.2382E-05 0.17125 8.396E-05 490.28211882951473 116.02 0.67255 111.66 111.25 111.92 -4.3585 0.10889 0.00017312 NaN 24.674 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2322600 42117 33 28006 28023 0.05969760305845284 SLELHLRQR 9 Unmodified _SLELHLRQR_ 0 0 0 ENSG00000184611|ENST00000332142|KCNH7 ENSG00000184611|ENST00000332142|KCNH7 ENSG00000184611|ENST00000332142|KCNH7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3171997070312 2 576.335821 1150.65709 -0.070556 -4.0664E-05 -0.96136 -0.00055406 -1.0319 -0.00059473 576.8376743120899 48.442 0.23927 45.573 45.418 45.657 -2.869 9 6 2 0 0 0 0.62102 2 9153 9153;9162 11.64 0 1 1982200 42118 6924 28007 28024 41522;41523 41522 0.08778730240078403 SLELLALA 8 Unmodified _SLELLALA_ 0 0 0 TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant;ENSG00000100726|ENST00000262319|TELO2;TELO2|p.P443L|1|0.13|ENSG00000100726|chr16:1501466-1501466|C/T|missense_variant;TELO2|p.L433V|1|0.4|ENSG00000100726|chr16:1501435-1501435|C/G|missense_variant TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.24432373046875 2 415.255111 828.49567 NaN NaN NaN NaN NaN NaN NaN 178.43 1 178.43 177.93 178.93 0 0 0 0 0.21486 1 36965 36965 0.79363 0 1 42119 2009 28008 28025 41524 41524 0.07456168154260467 SLELLALA 8 Unmodified _SLELLALA_ 0 0 0 TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant;ENSG00000100726|ENST00000262319|TELO2;TELO2|p.P443L|1|0.13|ENSG00000100726|chr16:1501466-1501466|C/T|missense_variant;TELO2|p.L433V|1|0.4|ENSG00000100726|chr16:1501435-1501435|C/G|missense_variant TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.23956298828125 2 415.255111 828.49567 NaN NaN NaN NaN NaN NaN NaN 114.68 1 110.12 109.62 110.62 -4.555 0 0 0 0.23366 1 22020 22020 0.12286 0 1 42120 2009 28008 28025 41525 41525 0.07456168154260467 SLELLALA 8 Unmodified _SLELLALA_ 0 0 0 TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant;ENSG00000100726|ENST00000262319|TELO2;TELO2|p.P443L|1|0.13|ENSG00000100726|chr16:1501466-1501466|C/T|missense_variant;TELO2|p.L433V|1|0.4|ENSG00000100726|chr16:1501435-1501435|C/G|missense_variant TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant TELO2|p.Q444Sfs*63|1|0.32|ENSG00000100726|chr16:1501463-1501463|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.2820739746094 2 415.255111 828.49567 NaN NaN NaN NaN NaN NaN NaN 178.63 1 173.73 173.23 174.23 -4.9088 0 0 0 0.21486 1 35637 35637 0.79363 0 1 42121 2009 28008 28025 41526 41526 0.07456168154260467 SLELLEDP 8 Unmodified _SLELLEDP_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23876953125 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 90.977 1 87.18 86.68 87.68 -3.7979 0 0 0 0.21486 1 17413 17413 12.532 0.89125 1 42122 6789 28009 28026 41527 41527 -0.0009733381324394941 SLELQLHQIA 10 Unmodified _SLELQLHQIA_ 0 0 0 nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2;nc|ENSG00000197646|Q9BQ51-2|PDCD1LG2;ENSG00000197646|ENST00000397747|PDCD1LG2 nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2 nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3245849609375 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 147.46 1 142.75 142.25 143.25 -4.7095 0 0 0 2.8426 1 29259 29259 10.151 0 1 42123 7386 28010 28027 41528 41528 0.06533086051808823 SLELTLGND 9 Unmodified _SLELTLGND_ 0 0 0 REV__CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant REV__CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2459411621094 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 115.91 1 111.43 110.93 111.93 -4.486 0 0 0 0.1124 1 22852 22852 36.044 7.5574 1 + 42124 13294 28011 28028 41529 41529 -0.005428329272717747 SLELTVSPD 9 Unmodified _SLELTVSPD_ 0 0 0 REV__ENSG00000111424|ENST00000549336|VDR REV__ENSG00000111424|ENST00000549336|VDR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24102783203125 2 480.747847 959.481142 0.56124 0.00026981 -0.46281 -0.0002225 0.098426 4.7318E-05 480.74752045048274 111.16 0.58965 106.93 106.62 107.21 -4.2289 39 16 3 0 0 0 0.44262 1 21352 21352 23.148 0 1 4555000 + 42125 15244 28012 28029 41530 41530 -0.00021948784512915154 SLENHGGGC 9 Unmodified _SLENHGGGC_ 0 0 0 ENST00000337852.10_1_X:48566837-48567230:+|nuORF ENST00000337852.10_1_X:48566837-48567230:+|nuORF ENST00000337852.10_1_X:48566837-48567230:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2289123535156 2 437.179609 872.344665 NaN NaN NaN NaN NaN NaN NaN 53.499 1 50.404 49.904 50.904 -3.0954 0 0 0 0.19649 1 9886 9886 0.029283 0.021006 1 42126 8820 28013 28030 41531 41531 -0.09661341496018849 SLENSLREV 9 Unmodified _SLENSLREV_ 0 0 0 ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000425245.1_1_1:214706446-214706704:+|nuORF;ENST00000565278.1_1_16:72763309-72763579:+|nuORF;ENST00000446618.1_1_22:19245879-19246326:+|nuORF;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;CON__H-INV:HIT000015463;ENST00000397031.2_1_2:182825941-182826409:-|nuORF ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF ENST00000549078.5_1_12:53344429-53346127:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6834106445312 2 523.77747 1045.54039 -0.24824 -0.00013002 0.54624 0.00028611 0.298 0.00015609 523.7778667079033 87.599 0.65176 83.871 83.54 84.192 -3.727 27 17 3 0 0 0 0.38759 1 17149 17149 19.626 12.149 1 3279200 42127 2602;9456 28014 28031 41532 41532 0.019439472296653548 SLENSLREV 9 Unmodified _SLENSLREV_ 0 0 0 ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000425245.1_1_1:214706446-214706704:+|nuORF;ENST00000565278.1_1_16:72763309-72763579:+|nuORF;ENST00000446618.1_1_22:19245879-19246326:+|nuORF;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;CON__H-INV:HIT000015463;ENST00000397031.2_1_2:182825941-182826409:-|nuORF ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF ENST00000549078.5_1_12:53344429-53346127:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.77747 1045.54039 0.20524 0.0001075 -0.032704 -1.713E-05 0.17254 9.0373E-05 523.7774227765436 87.624 0.60056 83.874 83.623 84.224 -3.7501 -0.031684 -0.00034567 NaN 19.626 30 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3233300 42128 2602;9456 28014 28031 0.019439472296653548 SLEPHPVPS 9 Unmodified _SLEPHPVPS_ 0 0 0 REV__ENSG00000170234|ENST00000307063|PWWP2A;REV__nc|ENSG00000170234|Q96N64-2|PWWP2A REV__ENSG00000170234|ENST00000307063|PWWP2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77410888671875 2 481.750724 961.486896 NaN NaN NaN NaN NaN NaN NaN 80.351 1 76.675 76.175 77.175 -3.676 0 0 0 0.22962 1 15319 15319 14.838 0.93222 1 + 42129 18148;24161 28015 28032 41533 41533 0.004611945178112364 SLEPTSPSRI 10 Unmodified _SLEPTSPSRI_ 0 0 0 REV__INO80D|p.V883Gfs*2|1|0.31|ENSG00000114933|chr2:206004804-206004804|A/-|frameshift_variant REV__INO80D|p.V883Gfs*2|1|0.31|ENSG00000114933|chr2:206004804-206004804|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7890014648438 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 147.05 1 142.36 141.86 142.86 -4.6868 0 0 0 0.22588 1 29171 29171 10.8 0.72558 1 + 42130 15394 28016 28033 41534 41534 0.032325202637593975 SLEPTYQQ 8 Unmodified _SLEPTYQQ_ 0 0 0 TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant;TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant;ENSG00000100154|ENST00000397906|TTC28;TTC28|p.V1305Wfs*29|1|0.31|ENSG00000100154|chr22:28094099-28094099|C/-|frameshift_variant;TTC28|p.D729Rfs*10|1|0.19|ENSG00000100154|chr22:28107660-28107661|-/T|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 967.4638061523438 1 965.457453 964.450176 -0.094528 -9.1263E-05 -0.034558 -3.3364E-05 -0.12909 -0.00012463 965.4572673207432 42.617 0.572 39.897 39.659 40.231 -2.7191 35 15 3 0 0 0 0.71273 1 7966 7966 12.532 0.89125 1 6792200 42131 1934 28017 28034 41535 41535 -0.033471020987576594 SLEPTYQQ 8 Unmodified _SLEPTYQQ_ 0 0 0 TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant;TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant;ENSG00000100154|ENST00000397906|TTC28;TTC28|p.V1305Wfs*29|1|0.31|ENSG00000100154|chr22:28094099-28094099|C/-|frameshift_variant;TTC28|p.D729Rfs*10|1|0.19|ENSG00000100154|chr22:28107660-28107661|-/T|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 965.457453 964.450176 0.67107 0.00064789 -0.79954 -0.00077192 -0.12847 -0.00012403 965.4565604554417 39.613 0.65997 39.613 39.304 39.964 0 -0.2461 -0.00051989 NaN 12.532 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 8052600 42132 1934 28017 28034 -0.033471020987576594 SLEPTYQQ 8 Unmodified _SLEPTYQQ_ 0 0 0 TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant;TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant;ENSG00000100154|ENST00000397906|TTC28;TTC28|p.V1305Wfs*29|1|0.31|ENSG00000100154|chr22:28094099-28094099|C/-|frameshift_variant;TTC28|p.D729Rfs*10|1|0.19|ENSG00000100154|chr22:28107660-28107661|-/T|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 965.457453 964.450176 0.17878 0.00017261 -0.049946 -4.8221E-05 0.12884 0.00012439 965.4572919015665 42.589 0.65571 39.938 39.674 40.329 -2.651 0.079398 0.00020381 NaN 12.532 36 18 3 NaN NaN NaN NaN 0 NaN NaN 0 7110300 42133 1934 28017 28034 -0.033471020987576594 SLEPTYQQ 8 Unmodified _SLEPTYQQ_ 0 0 0 TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant;TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant;ENSG00000100154|ENST00000397906|TTC28;TTC28|p.V1305Wfs*29|1|0.31|ENSG00000100154|chr22:28094099-28094099|C/-|frameshift_variant;TTC28|p.D729Rfs*10|1|0.19|ENSG00000100154|chr22:28107660-28107661|-/T|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 965.457453 964.450176 0.12619 0.00012183 -0.20678 -0.00019964 -0.080598 -7.7814E-05 965.4571866340748 42.592 0.73048 39.986 39.65 40.38 -2.606 0.12787 5.2388E-05 NaN 12.532 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6813300 42134 1934 28017 28034 -0.033471020987576594 SLEQNEVQF 9 Unmodified _SLEQNEVQF_ 0 0 0 REV__nc|ENSG00000111291|Q9NZD1-2|GPRC5D REV__nc|ENSG00000111291|Q9NZD1-2|GPRC5D MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7742309570312 2 547.261653 1092.50875 0.32432 0.00017749 -0.16338 -8.9411E-05 0.16094 8.8078E-05 547.2616202051753 121.54 0.6769 121.54 121.18 121.86 0 40 18 3 0 0 0 0.12505 1 23987 23987 47.749 2.0491 1 5650800 + 42135 15239 28018 28035 41536 41536 -0.03380045524295383 SLEQRLNEV 9 Unmodified _SLEQRLNEV_ 0 0 0 nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2 nc|ENSG00000065243|Q16513-4|PKN2 nc|ENSG00000065243|Q16513-4|PKN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79150390625 2 544.290745 1086.56694 0.092686 5.0448E-05 0.12744 6.9362E-05 0.22012 0.00011981 544.2908014917037 76.696 0.54887 72.929 72.609 73.158 -3.7664 25 15 2 0 0 0 0.78865 1 14537 14537 19.362 3.2128 1 2956600 42136 1354 28019 28036 41537 41537 0.027116361209891693 SLEQRLNEV 9 Unmodified _SLEQRLNEV_ 0 0 0 nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2 nc|ENSG00000065243|Q16513-4|PKN2 nc|ENSG00000065243|Q16513-4|PKN2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 544.290745 1086.56694 0.30271 0.00016476 -1.1151 -0.00060695 -0.8124 -0.00044218 544.2899697104447 72.653 0.37938 72.653 72.471 72.85 0 -0.16527 -0.00092476 NaN 14.405 15 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3954300 42137 1354 28019 28036 0.027116361209891693 SLERFKTY 8 Unmodified _SLERFKTY_ 0 0 0 RAD54L2|p.S296Yfs*37|1|0.33|ENSG00000164080|chr3:51633636-51633652|CAGCAGTGGCTTTGGCT/-|frameshift_variant RAD54L2|p.S296Yfs*37|1|0.33|ENSG00000164080|chr3:51633636-51633652|CAGCAGTGGCTTTGGCT/-|frameshift_variant RAD54L2|p.S296Yfs*37|1|0.33|ENSG00000164080|chr3:51633636-51633652|CAGCAGTGGCTTTGGCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2778930664062 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 135.89 1 131.25 130.75 131.75 -4.6399 0 0 0 0.21486 1 26809 26809 8.5933 1.304 1 42138 12857 28020 28037 41538 41538 0.025174564432290936 SLERLQLGY 9 Unmodified _SLERLQLGY_ 0 0 0 KCNAB3|p.V193M|1|0.2|ENSG00000170049|chr17:7925145-7925145|C/T|missense_variant;ENSG00000170049|ENST00000303790|KCNAB3 KCNAB3|p.V193M|1|0.2|ENSG00000170049|chr17:7925145-7925145|C/T|missense_variant KCNAB3|p.V193M|1|0.2|ENSG00000170049|chr17:7925145-7925145|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 95.362 1 95.362 94.862 95.862 0 0 0 0 0.23508 1 18682 18682 2.2828 0.3764 1 42139 6034 28021 28038 41539 41539 0.0461712798901317 SLERVYSLQ 9 Unmodified _SLERVYSLQ_ 0 0 0 ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7679443359375 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 143.94 1 139.27 138.77 139.77 -4.6694 0 0 0 0.21469 1 28483 28483 19.257 4.4187 1 42140 4780 28022 28039 41540 41540 0.03372824126381602 SLESDNPHDQ 10 Unmodified _SLESDNPHDQ_ 0 0 0 REV__BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant REV__BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2100830078125 3 381.163392 1140.46835 0.21877 8.3387E-05 2.2726 0.00086624 2.4914 0.00094963 381.49886616638094 93.64 0.47372 89.496 89.213 89.686 -4.1435 34 13 4 0 0 0 0.91149 1 17885 17885 5.7834 4.5901 1 1815300 + 42141 13207 28023 28040 41541 41541 -0.09627011914722061 SLESDNPHDQ 10 Unmodified _SLESDNPHDQ_ 0 0 0 REV__BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant REV__BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 381.163392 1140.46835 -0.22243 -8.4781E-05 4.7367 0.0018055 4.5143 0.0017207 381.49929239248047 93.508 0.37445 89.517 89.351 89.726 -3.9907 0.010417 0.0011978 NaN 5.7834 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2416200 + 42142 13207 28023 28040 -0.09627011914722061 SLESKLTSV 9 Unmodified _SLESKLTSV_ 0 0 0 ADGRG1|p.G309Vfs*14|1|0.34|ENSG00000205336|chr16:57655899-57655899|G/-|frameshift_variant;nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;nc|ENSG00000205336|Q9Y653-3|ADGRG1 ADGRG1|p.G309Vfs*14|1|0.34|ENSG00000205336|chr16:57655899-57655899|G/-|frameshift_variant ADGRG1|p.G309Vfs*14|1|0.34|ENSG00000205336|chr16:57655899-57655899|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76885986328125 2 482.27149 962.528426 0.070444 3.3973E-05 -0.53016 -0.00025568 -0.45971 -0.00022171 482.271124553751 87.861 0.59742 84.111 83.763 84.361 -3.7501 37 16 3 0 0 0 0.12656 1 16813 16813 61.09 5.5872 1 5332200 42143 79 28024 28041 41542 41542 0.045663304864774545 SLESLPTLPS 10 Unmodified _SLESLPTLPS_ 0 0 0 REV__F13B|p.I615Kfs*8|1|0.05|ENSG00000143278|chr1:197040630-197040631|-/GGTAAGAAGTTTTTTT|frameshift_variant REV__F13B|p.I615Kfs*8|1|0.05|ENSG00000143278|chr1:197040630-197040631|-/GGTAAGAAGTTTTTTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2821044921875 2 522.284597 1042.55464 NaN NaN NaN NaN NaN NaN NaN 135.68 1 131.04 130.54 131.54 -4.6399 0 0 0 0.22588 1 26763 26763 8.7454 0.83525 1 + 42144 16708 28025 28042 41543 41543 0.03506599657953302 SLETGQPVP 9 Unmodified _SLETGQPVP_ 0 0 0 REV__nc|ENSG00000184371|P09603-2|CSF1 REV__nc|ENSG00000184371|P09603-2|CSF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24578857421875 2 464.242732 926.470912 0.61254 0.00028437 -0.48239 -0.00022395 0.13014 6.0418E-05 464.2423801234162 111.23 0.56165 107 106.73 107.29 -4.2289 33 15 3 0 0 0 0.1515 1 21390 21390 0.37959 0 1 1720000 + 42145 18893 28026 28043 41544 41544 0.0047348828089752715 SLEYIQFVP 9 Unmodified _SLEYIQFVP_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7930908203125 2 548.289682 1094.56481 0.2129 0.00011673 -3.8888 -0.0021322 -3.6759 -0.0020154 548.286447384663 160.85 0.17677 155.62 155.51 155.69 -5.2299 6 4 2 0 0 0 0.65155 1 31230 31230 15.847 1.0089 1 1034500 42146 6631 28027 28044 41545 41545 0.02131207383195033 SLEYLRFLY 9 Unmodified _SLEYLRFLY_ 0 0 0 ENST00000603284.1_1_8:77316524-77316740:+|nuORF ENST00000603284.1_1_8:77316524-77316740:+|nuORF ENST00000603284.1_1_8:77316524-77316740:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3005981445312 2 602.324057 1202.63356 NaN NaN NaN NaN NaN NaN NaN 156.65 1 151.38 150.88 151.88 -5.2712 0 0 0 0.19721 1 30384 30384 24.021 0.23079 1 42147 11723 28028 28045 41546 41546 0.04034871682915764 SLFAPFDF 8 Unmodified _SLFAPFDF_ 0 0 0 nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1 nc|ENSG00000182771|Q9ULK0-2|GRID1 nc|ENSG00000182771|Q9ULK0-2|GRID1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1568908691406 3 315.15685 942.448719 NaN NaN NaN NaN NaN NaN NaN 19.702 1 18.305 17.805 18.805 -1.3966 0 0 0 0.21486 1 3258 3258 0.45834 0 1 42148 6811 28029 28046 41547 41547 -0.024806913968632216 SLFEGKALGL 10 Unmodified _SLFEGKALGL_ 0 0 0 ENSG00000113812|ENST00000335754|ACTR8;nc|ENSG00000113812|Q9H981-2|ACTR8;ENST00000495993.1_1_3:53905208-53907064:-|nuORF;nc|ENSG00000113812|Q9H981-3|ACTR8 ENSG00000113812|ENST00000335754|ACTR8 ENSG00000113812|ENST00000335754|ACTR8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 517.7218627929688 2 517.797675 1033.5808 0.21029 0.00010889 0.64384 0.00033338 0.85413 0.00044227 517.7980507290163 147.07 0.52209 147.07 146.77 147.29 0 21 14 2 0 0 0 1.0247 1 29380 29380 44.392 33.493 1 3915700 42149 2765 28030 28047 41548 41548 0.06534913620089355 SLFEGKALGL 10 Unmodified _SLFEGKALGL_ 0 0 0 ENSG00000113812|ENST00000335754|ACTR8;nc|ENSG00000113812|Q9H981-2|ACTR8;ENST00000495993.1_1_3:53905208-53907064:-|nuORF;nc|ENSG00000113812|Q9H981-3|ACTR8 ENSG00000113812|ENST00000335754|ACTR8 ENSG00000113812|ENST00000335754|ACTR8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 517.797675 1033.5808 -0.076533 -3.9629E-05 0.19798 0.00010251 0.12145 6.2886E-05 517.7976710006112 151.46 0.52437 146.71 146.46 146.99 -4.7523 -0.15317 0.00013973 NaN 44.392 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 5428300 42150 2765 28030 28047 0.06534913620089355 SLFEGKALGL 10 Unmodified _SLFEGKALGL_ 0 0 0 ENSG00000113812|ENST00000335754|ACTR8;nc|ENSG00000113812|Q9H981-2|ACTR8;ENST00000495993.1_1_3:53905208-53907064:-|nuORF;nc|ENSG00000113812|Q9H981-3|ACTR8 ENSG00000113812|ENST00000335754|ACTR8 ENSG00000113812|ENST00000335754|ACTR8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 517.797675 1033.5808 -0.48395 -0.00025059 0.29284 0.00015163 -0.19111 -9.8957E-05 517.7981535314428 152.06 0.64348 146.83 146.53 147.18 -5.2365 -0.039684 0.00023796 NaN 44.392 32 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3608000 42151 2765 28030 28047 0.06534913620089355 SLFEGKALGL 10 Unmodified _SLFEGKALGL_ 0 0 0 ENSG00000113812|ENST00000335754|ACTR8;nc|ENSG00000113812|Q9H981-2|ACTR8;ENST00000495993.1_1_3:53905208-53907064:-|nuORF;nc|ENSG00000113812|Q9H981-3|ACTR8 ENSG00000113812|ENST00000335754|ACTR8 ENSG00000113812|ENST00000335754|ACTR8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 517.797675 1033.5808 0.38608 0.00019991 -0.28832 -0.00014929 0.097764 5.0622E-05 517.7975575203642 152.03 0.57129 146.85 146.55 147.12 -5.1759 -0.015018 -0.00036388 NaN 44.392 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2797400 42152 2765 28030 28047 0.06534913620089355 SLFERRQRETY 11 Unmodified _SLFERRQRETY_ 0 0 0 REV__ENST00000487222.5_1_7:100401085-100421908:-|nuORF REV__ENST00000487222.5_1_7:100401085-100421908:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3726196289062 2 742.883864 1483.75317 0.45179 0.00033563 1.586 0.0011782 2.0378 0.0015138 742.8850829777718 93.88 0.84087 89.736 89.049 89.89 -4.1435 31 24 2 0 0 0 0.95337 1 17926 17926 2.9952 1.6657 1 2876800 + 42153 19244 28031 28048 41549 41549 0.03064833289499802 SLFFSFTWKP 10 Unmodified _SLFFSFTWKP_ 0 0 0 REV__nc|ENSG00000183530|Q5THK1-2|PRR14L REV__nc|ENSG00000183530|Q5THK1-2|PRR14L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7616577148438 2 630.326599 1258.63865 NaN NaN NaN NaN NaN NaN NaN 94.117 1 90.126 89.626 90.626 -3.9907 0 0 0 2.8426 1 18438 18438 0.0013812 0 1 + 42154 18841 28032 28049 41550 41550 0.019671755455192397 SLFFVCVF 8 Unmodified _SLFFVCVF_ 0 0 0 ENST00000326764.9_2_19:54972239-54972944:+|nuORF;nc|ENSG00000101464|Q9H490-2|PIGU;ENSG00000101464|ENST00000217446|PIGU ENST00000326764.9_2_19:54972239-54972944:+|nuORF ENST00000326764.9_2_19:54972239-54972944:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2474060058594 2 481.246232 960.477911 NaN NaN NaN NaN NaN NaN NaN 143.94 1 143.94 143.44 144.44 0 0 0 0 0.21323 1 28744 28744 14.582 1.0738 1 42155 2072 28033 28050 41551 41551 -0.003908703722231621 SLFGGTSGL 9 Unmodified _SLFGGTSGL_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;HECTD4|p.L1880Pfs*22|1|0.19|ENSG00000173064|chr12:112231674-112231675|-/TAGGA|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-3|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4853515625 1 838.430509 837.423233 0.49166 0.00041222 0.2786 0.00023359 0.77026 0.00064581 838.4303400626 134.55 0.42438 134.55 134.28 134.71 0 15 11 2 0 0 0 0.058839 1 26622 26622 4.7159 3.024 1 5142200 42156 6261 28034 28051 41552 41552 -0.0019816591928929483 SLFGGTSGL 9 Unmodified _SLFGGTSGL_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;HECTD4|p.L1880Pfs*22|1|0.19|ENSG00000173064|chr12:112231674-112231675|-/TAGGA|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-3|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4656982421875 1 838.430509 837.423233 0.42552 0.00035677 -0.16423 -0.0001377 0.26129 0.00021907 838.430412460122 139.3 0.62434 134.66 134.27 134.89 -4.6439 29 17 2 0 0 0 0.058839 2 27464 27464;27531 39.957 7.6518 1 5290500 42157 6261 28034 28051 41553;41554 41553 -0.0019816591928929483 SLFGGTSGL 9 Unmodified _SLFGGTSGL_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;HECTD4|p.L1880Pfs*22|1|0.19|ENSG00000173064|chr12:112231674-112231675|-/TAGGA|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-3|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 838.430509 837.423233 0.31121 0.00026093 -0.60852 -0.0005102 -0.29731 -0.00024928 838.4303512013716 139.62 0.56662 134.67 134.35 134.91 -4.952 0.049283 -0.00040397 NaN 4.7159 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4040400 42158 6261 28034 28051 -0.0019816591928929483 SLFGGTSGL 9 Unmodified _SLFGGTSGL_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;HECTD4|p.L1880Pfs*22|1|0.19|ENSG00000173064|chr12:112231674-112231675|-/TAGGA|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-3|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 838.430509 837.423233 0.42545 0.00035671 -0.07857 -6.5875E-05 0.34688 0.00029084 838.4303298109156 139.46 0.52499 134.61 134.39 134.91 -4.8492 -0.015383 4.0358E-05 NaN 4.7159 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3023100 42159 6261 28034 28051 -0.0019816591928929483 SLFGNIKGA 9 Unmodified _SLFGNIKGA_ 0 0 0 nc|ENSG00000111885|P33908-2|MAN1A1;ENSG00000111885|ENST00000368468|MAN1A1 nc|ENSG00000111885|P33908-2|MAN1A1 nc|ENSG00000111885|P33908-2|MAN1A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7557067871094 2 453.75581 905.497067 -0.32758 -0.00014864 0.50883 0.00023088 0.18125 8.2242E-05 453.75596330562263 104.77 0.59431 100.55 100.27 100.86 -4.2183 27 16 2 0 0 0 0.1793 1 20619 20619 39.957 9.7325 1 3225500 42160 2657 28035 28052 41555 41555 0.040538022430382625 SLFGNIKGA 9 Unmodified _SLFGNIKGA_ 0 0 0 nc|ENSG00000111885|P33908-2|MAN1A1;ENSG00000111885|ENST00000368468|MAN1A1 nc|ENSG00000111885|P33908-2|MAN1A1 nc|ENSG00000111885|P33908-2|MAN1A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7557067871094 2 453.75581 905.497067 0.08207 3.724E-05 0.047264 2.1446E-05 0.12933 5.8686E-05 453.7557368584716 104.96 0.6538 100.59 100.18 100.84 -4.3764 33 18 2 0 0 0 0.1793 3 20077 20077;20088;20127 39.957 9.7325 1 2566500 42161 2657 28035 28052 41556;41557;41558 41556 0.040538022430382625 SLFGNIKGA 9 Unmodified _SLFGNIKGA_ 0 0 0 nc|ENSG00000111885|P33908-2|MAN1A1;ENSG00000111885|ENST00000368468|MAN1A1 nc|ENSG00000111885|P33908-2|MAN1A1 nc|ENSG00000111885|P33908-2|MAN1A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.755859375 2 453.75581 905.497067 0.7049 0.00031985 -0.62521 -0.00028369 0.079695 3.6162E-05 453.7554542646052 104.66 0.74086 100.6 100.13 100.87 -4.0543 31 20 2 0 0 0 0.1793 1 20137 20137 39.957 5.8549 1 2768000 42162 2657 28035 28052 41559 41559 0.040538022430382625 SLFGQDVKAV 10 Unmodified _SLFGQDVKAV_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2787475585938 2 532.292756 1062.57096 0.26643 0.00014182 -0.21391 -0.00011386 0.052525 2.7959E-05 532.2926308246936 107.45 0.83318 107.45 107.13 107.97 0 48 23 3 0 0 0 0.25854 1 21119 21119 25.997 25.122 1 7938800 42163 12285 28036 28053 41560 41560 0.042177256146942455 SLFGQDVKAV 10 Unmodified _SLFGQDVKAV_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.292756 1062.57096 0.31053 0.00016529 -0.7054 -0.00037548 -0.39487 -0.00021019 532.2919722862741 111.84 1.1162 107.35 106.68 107.8 -4.4915 0.0066448 -0.00028042 NaN 25.997 62 31 3 NaN NaN NaN NaN 0 NaN NaN 0 4513700 42164 12285 28036 28053 0.042177256146942455 SLFIRREQAN 10 Unmodified _SLFIRREQAN_ 0 0 0 ENST00000483537.1_1_13:113777169-113784337:+|nuORF;F10|p.T211Hfs*9|1|0.13|ENSG00000126218|chr13:113143974-113143975|-/C|frameshift_variant;ENST00000477269.5_1_13:113777169-113798523:+|nuORF;ENSG00000126218|ENST00000375559|F10 ENST00000483537.1_1_13:113777169-113784337:+|nuORF ENST00000483537.1_1_13:113777169-113784337:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 617.3564453125 2 617.338561 1232.66257 NaN NaN NaN NaN NaN NaN NaN 169.31 1 169.31 168.81 169.81 0 0 0 0 0.22588 1 34742 34742 8.7454 1.1365 1 42165 3420 28037 28054 41561 41561 0.055544090319017414 SLFKELQEA 9 Unmodified _SLFKELQEA_ 0 0 0 nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN nc|ENSG00000123240|Q96CV9-3|OPTN nc|ENSG00000123240|Q96CV9-3|OPTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2830200195312 2 532.784764 1063.55498 0.859 0.00045766 -3.9441 -0.0021013 -3.0851 -0.0016437 532.7839616364186 118.46 0.65444 113.85 113.56 114.21 -4.6106 21 15 2 0 0 0 0.080883 1 22728 22728 61.602 17.744 1 1819800 42166 3258 28038 28055 41562 41562 0.025740193777892273 SLFKELQEA 9 Unmodified _SLFKELQEA_ 0 0 0 nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN nc|ENSG00000123240|Q96CV9-3|OPTN nc|ENSG00000123240|Q96CV9-3|OPTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.28271484375 2 532.784764 1063.55498 0.48287 0.00025727 -2.7403 -0.00146 -2.2574 -0.0012027 532.784686092075 118.28 0.88565 113.87 113.43 114.32 -4.4088 33 19 2 0 0 0 0.24263 2 22764 22764;22778 34.932 3.6637 1 1660000 42167 3258 28038 28055 41563;41564 41563 0.025740193777892273 SLFKGGPKNF 10 Unmodified _SLFKGGPKNF_ 0 0 0 REV__ENST00000469669.5_1_22:29687503-29687620:+|nuORF REV__ENST00000469669.5_1_22:29687503-29687620:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7732543945312 2 547.803291 1093.59203 0.3313 0.00018149 -2.5386 -0.0013906 -2.2073 -0.0012092 548.303672087738 142.41 0.1786 142.41 142.33 142.51 0 7 4 2 0 0 0 0.86078 1 28402 28402 12.241 8.9593 1 1702500 + 42168 22016 28039 28056 41565 41565 0.04897735714234841 SLFKHQRVH 9 Unmodified _SLFKHQRVH_ 0 0 0 ENSG00000083812|ENST00000196482|ZNF324 ENSG00000083812|ENST00000196482|ZNF324 ENSG00000083812|ENST00000196482|ZNF324 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3276977539062 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 121.82 1 117.27 116.77 117.77 -4.5476 0 0 0 0.19632 1 24011 24011 0.073264 0 1 42169 1657 28040 28057 41566 41566 0.06666764931219404 SLFLKKLKIVA 11 Unmodified _SLFLKKLKIVA_ 0 0 0 ENST00000456969.2_1_X:75555899-75556166:-|nuORF ENST00000456969.2_1_X:75555899-75556166:-|nuORF ENST00000456969.2_1_X:75555899-75556166:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7540893554688 2 630.426116 1258.83768 0.40711 0.00025666 -3.5033 -0.0022085 -3.0961 -0.0019519 630.9252435569495 149.15 0.1687 149.15 149.06 149.23 0 5 4 2 0 0 0 0.96209 1 29846 29846 0.30703 0 1 3575300 42170 10032 28041 28058 41567 41567 0.21861435844220978 SLFLQDDED 9 Unmodified _SLFLQDDED_ 0 0 0 WFS1|p.L293Cfs*11|1|0.27|ENSG00000109501|chr4:6300668-6300668|C/-|frameshift_variant;ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1 WFS1|p.L293Cfs*11|1|0.27|ENSG00000109501|chr4:6300668-6300668|C/-|frameshift_variant WFS1|p.L293Cfs*11|1|0.27|ENSG00000109501|chr4:6300668-6300668|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2804565429688 2 541.237844 1080.46113 0.30916 0.00016733 -3.3234 -0.0017988 -3.0143 -0.0016314 541.2377920883999 154.16 0.207 154.16 154.05 154.25 0 6 5 2 0 0 0 0.68708 1 30903 30903 6.7232 0.51738 1 3309200 42171 2531 28042 28059 41568 41568 -0.07587744515149097 SLFLWPLLY 9 Unmodified _SLFLWPLLY_ 0 0 0 ENST00000591565.1_1_19:14515197-14515620:+|nuORF ENST00000591565.1_1_19:14515197-14515620:+|nuORF ENST00000591565.1_1_19:14515197-14515620:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3284301757812 2 576.328611 1150.64267 NaN NaN NaN NaN NaN NaN NaN 144.01 1 139.34 138.84 139.84 -4.6694 0 0 0 0.23508 1 28500 28500 7.9102 1.7044 1 42172 11624 28043 28060 41569 41569 0.07337265039222984 SLFLWPLLY 9 Unmodified _SLFLWPLLY_ 0 0 0 ENST00000591565.1_1_19:14515197-14515620:+|nuORF ENST00000591565.1_1_19:14515197-14515620:+|nuORF ENST00000591565.1_1_19:14515197-14515620:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3138427734375 2 576.328611 1150.64267 0.43992 0.00025354 0.39619 0.00022833 0.83611 0.00048187 576.3269234952367 87.777 0.10422 83.781 83.695 83.799 -3.9953 4 2 2 0 0 0 0.66537 1 16714 16714 8.5933 0 1 689620 42173 11624 28043 28060 41570 41570 0.07337265039222984 SLFNANYDV 9 Unmodified _SLFNANYDV_ 0 0 0 ENSG00000117899|ENST00000261758|MESD ENSG00000117899|ENST00000261758|MESD ENSG00000117899|ENST00000261758|MESD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2573852539062 2 521.745639 1041.47673 -0.19064 -9.9466E-05 0.43073 0.00022473 0.24009 0.00012527 521.7458474524572 140.65 0.57278 136 135.69 136.26 -4.6493 28 15 2 0 0 0 0.13932 2 27765 27724;27765 45.7 11.597 1 5664300 42174 3008 28044 28061 41571;41572 41572 -0.04235413207447891 SLFNANYDV 9 Unmodified _SLFNANYDV_ 0 0 0 ENSG00000117899|ENST00000261758|MESD ENSG00000117899|ENST00000261758|MESD ENSG00000117899|ENST00000261758|MESD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2571411132812 2 521.745639 1041.47673 -0.64299 -0.00033548 0.82512 0.0004305 0.18212 9.5021E-05 521.7461842227568 140.99 0.5634 136 135.64 136.2 -4.9877 27 15 2 0 0 0 0.13932 1 27150 27150 45.7 11.597 1 3949700 42175 3008 28044 28061 41573 41573 -0.04235413207447891 SLFNMLIKE 9 Unmodified _SLFNMLIKE_ 0 0 0 REV__MED1|p.N146Ifs*24|1|0.3|ENSG00000125686|chr17:39434312-39434312|T/-|frameshift_variant REV__MED1|p.N146Ifs*24|1|0.3|ENSG00000125686|chr17:39434312-39434312|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.767822265625 2 547.79936 1093.58417 NaN NaN NaN NaN NaN NaN NaN 159.71 1 154.91 154.41 155.41 -4.7952 0 0 0 0.23508 1 31754 31754 10.074 2.1638 1 + 42176 23838 28045 28062 41574 41574 0.04111840402447342 SLFNVKDQTV 10 Unmodified _SLFNVKDQTV_ 0 0 0 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32275390625 2 575.808771 1149.60299 -0.35941 -0.00020695 0.15007 8.641E-05 -0.20934 -0.00012054 575.808864919045 106.27 0.48352 102.01 101.87 102.35 -4.2638 17 13 2 0 0 0 0.086838 2 20963 20922;20963 31.268 19.094 1 1029600 42177 3426 28046 28063 41575;41576 41576 0.03417093297844076 SLFPGKLEV 9 Unmodified _SLFPGKLEV_ 0 0 0 nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-2|FLII MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 496.77471923828125 2 495.286943 988.559333 0.19642 9.7285E-05 0.16859 8.3502E-05 0.36501 0.00018079 495.28696274557313 146.92 1.0724 146.92 146.43 147.5 0 95 30 4 0 0 0 0.15889 1 29378 29378 27.129 6.6752 1 37517000 42178 6535 28047 28064 41577 41577 0.0645952859136969 SLFPGKLEV 9 Unmodified _SLFPGKLEV_ 0 0 0 nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-2|FLII MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 496.299072265625 2 495.286943 988.559333 0.10057 4.9811E-05 0.27985 0.00013861 0.38042 0.00018842 495.2870117168084 151.96 1.1385 146.73 146.18 147.32 -5.2365 96 31 4 0 0 0 0.10537 1 29529 29529 30.703 27.116 1 44537000 42179 6535 28047 28064 41578 41578 0.0645952859136969 SLFPGKLEV 9 Unmodified _SLFPGKLEV_ 0 0 0 nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-2|FLII MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 495.286943 988.559333 0.17223 8.5304E-05 0.17475 8.6553E-05 0.34699 0.00017186 495.2869576181875 151.41 1.1546 146.66 146.08 147.24 -4.7523 -0.08839 -2.6241E-05 NaN 30.703 100 32 4 NaN NaN NaN NaN 0 NaN NaN 0 52217000 42180 6535 28047 28064 0.0645952859136969 SLFPGKLEV 9 Unmodified _SLFPGKLEV_ 0 0 0 nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-2|FLII MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 495.286943 988.559333 0.17423 8.6292E-05 0.16545 8.1943E-05 0.33967 0.00016823 495.28693828509216 151.85 1.1262 146.67 146.14 147.26 -5.1759 -0.072859 -3.5461E-05 NaN 30.703 106 31 4 NaN NaN NaN NaN 0 NaN NaN 0 41433000 42181 6535 28047 28064 0.0645952859136969 SLFPLLEVSF 10 Unmodified _SLFPLLEVSF_ 0 0 0 REV__SLC39A7|p.F151Lfs*87|1|0.37|ENSG00000112473|chr6:33201781-33201781|T/-|frameshift_variant REV__SLC39A7|p.F151Lfs*87|1|0.37|ENSG00000112473|chr6:33201781-33201781|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3259887695312 2 576.320983 1150.62741 NaN NaN NaN NaN NaN NaN NaN 153.31 1 153.31 152.81 153.81 0 0 0 0 0.22583 1 30713 30713 13.906 3.7555 1 + 42182 24642 28048 28065 41579 41579 0.05812353451369745 SLFPNKLLGY 10 Unmodified _SLFPNKLLGY_ 0 0 0 REV__nc|ENSG00000136758|Q96TA2-3|YME1L1 REV__nc|ENSG00000136758|Q96TA2-3|YME1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3328247070312 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 158.91 1 154.11 153.61 154.61 -4.7952 0 0 0 0.22569 1 31603 31603 15.847 1.0089 1 + 42183 16347 28049 28066 41580 41580 0.06935175545504535 SLFQWLAIT 9 Unmodified _SLFQWLAIT_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013244628906 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 122.93 1 122.93 122.43 123.43 0 0 0 0 0.23508 1 24227 24227 1.9064 0.31409 1 + 42184 18377 28050 28067 41581 41581 0.050192174826861446 SLFRWNQRYFF 11 Unmodified _SLFRWNQRYFF_ 0 0 0 REV__ENST00000512260.5_2_5:175603743-175612170:-|nuORF REV__ENST00000512260.5_2_5:175603743-175612170:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 521.9328002929688 3 521.933366 1562.77827 NaN NaN NaN NaN NaN NaN NaN 169.1 1 169.1 168.6 169.6 0 0 0 0 0.23698 1 34696 34696 2.4348 1.1051 1 + 42185 22556 28051 28068 41582 41582 0.019389328827401187 SLFTQASKQA 10 Unmodified _SLFTQASKQA_ 0 0 0 REV__SSBP4|p.G33C|1|0.4|ENSG00000130511|chr19:18427388-18427388|G/T|missense_variant REV__SSBP4|p.G33C|1|0.4|ENSG00000130511|chr19:18427388-18427388|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.1957092285156 3 360.860984 1079.56112 -0.79207 -0.00028583 0.44841 0.00016181 -0.34367 -0.00012402 360.8610073700515 44.984 0.73932 42.237 41.883 42.623 -2.7475 30 20 2 0 0 0 1.128 1 8201 8201 0.063865 0.034582 1 790260 + 42186 16009 28052 28069 41583 41583 0.024525376093151863 SLFTQASKQA 10 Unmodified _SLFTQASKQA_ 0 0 0 REV__SSBP4|p.G33C|1|0.4|ENSG00000130511|chr19:18427388-18427388|G/T|missense_variant REV__SSBP4|p.G33C|1|0.4|ENSG00000130511|chr19:18427388-18427388|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 360.860984 1079.56112 -0.27653 -9.979E-05 0.80704 0.00029123 0.53051 0.00019144 360.86077325148926 45.153 1.3429 42.363 41.642 42.985 -2.79 0.1315 0.0006886 NaN 0.043787 52 37 2 NaN NaN NaN NaN 0 NaN NaN 0 1393300 + 42187 16009 28052 28069 0.024525376093151863 SLFTQASKQA 10 Unmodified _SLFTQASKQA_ 0 0 0 REV__SSBP4|p.G33C|1|0.4|ENSG00000130511|chr19:18427388-18427388|G/T|missense_variant REV__SSBP4|p.G33C|1|0.4|ENSG00000130511|chr19:18427388-18427388|G/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 360.860984 1079.56112 -0.02388 -8.6174E-06 -0.25905 -9.3479E-05 -0.28293 -0.0001021 360.8607911472158 44.961 0.84843 42.095 41.6 42.449 -2.8653 -0.13639 -0.00046553 NaN 0.043787 35 23 3 NaN NaN NaN NaN 0 NaN NaN 0 906040 + 42188 16009 28052 28069 0.024525376093151863 SLFVYPRNR 9 Unmodified _SLFVYPRNR_ 0 0 0 REV__AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant REV__AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3229370117188 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 115.47 1 110.92 110.42 111.42 -4.555 0 0 0 0.19679 1 22170 22170 1.2148 0.36989 1 + 42189 12985 28053 28070 41584 41584 0.055439428370846144 SLFYFSDGF 9 Unmodified _SLFYFSDGF_ 0 0 0 REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant REV__PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2774658203125 2 541.745108 1081.47566 0.22913 0.00012413 -0.70746 -0.00038326 -0.47832 -0.00025913 541.7426953187835 159.84 0.14261 154.61 154.52 154.66 -5.2299 5 3 2 0 0 0 0.87258 1 31022 31022 4.3292 0 1 980840 + 42190 16251 28054 28071 41585 41585 -0.06181627576347637 SLFYPYNDSP 10 Unmodified _SLFYPYNDSP_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant;NEB|p.P541Lfs*16|1|0.49|ENSG00000183091|chr2:151695630-151695630|G/-|frameshift_variant;NEB|p.K715Nfs*8|1|0.06|ENSG00000183091|chr2:151691930-151691930|T/-|frameshift_variant;NEB|p.P928Lfs*29|1|0.38|ENSG00000183091|chr2:151684830-151684830|G/-|frameshift_variant nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2728881835938 2 601.771854 1201.52915 0.68496 0.00041219 -1.3004 -0.00078253 -0.61541 -0.00037034 601.7710298091503 30.203 0.34945 28.31 28.101 28.45 -1.8928 16 9 3 0 0 0 0.45577 1 5164 5164 38.176 14.386 1 917230 42191 6829 28055 28072 41586 41586 -0.06354874864496196 SLFYPYNDSP 10 Unmodified _SLFYPYNDSP_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant;NEB|p.P541Lfs*16|1|0.49|ENSG00000183091|chr2:151695630-151695630|G/-|frameshift_variant;NEB|p.K715Nfs*8|1|0.06|ENSG00000183091|chr2:151691930-151691930|T/-|frameshift_variant;NEB|p.P928Lfs*29|1|0.38|ENSG00000183091|chr2:151684830-151684830|G/-|frameshift_variant nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 601.771854 1201.52915 1.4874 0.00089507 -1.6964 -0.0010208 -0.20899 -0.00012577 601.7707624745295 30.323 0.3152 28.206 28.048 28.363 -2.1167 -0.045588 -0.00043566 NaN 38.176 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 772270 42192 6829 28055 28072 -0.06354874864496196 SLFYPYNDSP 10 Unmodified _SLFYPYNDSP_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant;NEB|p.P541Lfs*16|1|0.49|ENSG00000183091|chr2:151695630-151695630|G/-|frameshift_variant;NEB|p.K715Nfs*8|1|0.06|ENSG00000183091|chr2:151691930-151691930|T/-|frameshift_variant;NEB|p.P928Lfs*29|1|0.38|ENSG00000183091|chr2:151684830-151684830|G/-|frameshift_variant nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 601.771854 1201.52915 0.68496 0.00041219 -1.3004 -0.00078253 -0.61541 -0.00037034 601.7710298091503 30.203 0.34945 28.31 28.101 28.45 -1.8928 0.058087 4.0952E-05 NaN 38.176 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 917230 42193 6829 28055 28072 -0.06354874864496196 SLFYWNPY 8 Unmodified _SLFYWNPY_ 0 0 0 GXYLT1|p.C81F|1|0.28|ENSG00000151233|chr12:42129831-42129831|C/A|missense_variant GXYLT1|p.C81F|1|0.28|ENSG00000151233|chr12:42129831-42129831|C/A|missense_variant GXYLT1|p.C81F|1|0.28|ENSG00000151233|chr12:42129831-42129831|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 545.78759765625 2 545.255643 1088.49673 0.31067 0.00016939 -3.7842 -0.0020634 -3.4735 -0.001894 545.2538336614251 125.11 0.53738 120.46 120.14 120.67 -4.6495 18 14 2 0 0 0 0.72861 1 24033 24033 10.183 1.5901 1 1328200 42194 11870 28056 28073 41587 41587 -0.043976174768204146 SLFYWNPY 8 Unmodified _SLFYWNPY_ 0 0 0 GXYLT1|p.C81F|1|0.28|ENSG00000151233|chr12:42129831-42129831|C/A|missense_variant GXYLT1|p.C81F|1|0.28|ENSG00000151233|chr12:42129831-42129831|C/A|missense_variant GXYLT1|p.C81F|1|0.28|ENSG00000151233|chr12:42129831-42129831|C/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 545.255643 1088.49673 0.35878 0.00019562 -5.3492 -0.0029167 -4.9904 -0.002721 545.2527667485632 124.81 0.21094 120.21 120.09 120.3 -4.5984 -0.13313 -0.0019702 NaN 10.183 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 645480 42195 11870 28056 28073 -0.043976174768204146 SLFYWNPY 8 Unmodified _SLFYWNPY_ 0 0 0 GXYLT1|p.C81F|1|0.28|ENSG00000151233|chr12:42129831-42129831|C/A|missense_variant GXYLT1|p.C81F|1|0.28|ENSG00000151233|chr12:42129831-42129831|C/A|missense_variant GXYLT1|p.C81F|1|0.28|ENSG00000151233|chr12:42129831-42129831|C/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 545.255643 1088.49673 0.36958 0.00020151 -2.9861 -0.0016282 -2.6165 -0.0014267 545.2534045037343 125.13 0.41432 120.36 120.16 120.58 -4.7681 0.014173 0.00060672 NaN 10.183 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 988290 42196 11870 28056 28073 -0.043976174768204146 SLGCGVDI 8 Unmodified _SLGCGVDI_ 0 0 0 ENST00000481071.1_1_2:242162779-242163565:+|nuORF;ENST00000459928.1_1_2:242162779-242163565:+|nuORF;ENST00000487192.1_1_2:242162779-242163565:+|nuORF ENST00000481071.1_1_2:242162779-242163565:+|nuORF ENST00000481071.1_1_2:242162779-242163565:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 382.18597412109375 2 382.186371 762.35819 NaN NaN NaN NaN NaN NaN NaN 123.11 1 118.52 118.02 119.02 -4.5926 0 0 0 0.21486 1 23699 23699 2.3027 0 1 42197 10050 28057 28074 41588 41588 -0.032494837167973856 SLGDIPVSRV 10 Unmodified _SLGDIPVSRV_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2781982421875 2 521.798206 1041.58186 0.7816 0.00040784 -0.74902 -0.00039083 0.032584 1.7002E-05 521.7977542921733 106.14 0.61966 102.05 101.67 102.29 -4.0913 26 17 2 0 0 0 0.58591 1 20396 20396 28.495 6.9575 1 2087200 42198 2186 28058 28075 41589 41589 0.0627312798899311 SLGDTGITPP 10 Unmodified _SLGDTGITPP_ 0 0 0 HSPA12A|p.L36P|1|0.44|ENSG00000165868|chr10:116707219-116707219|A/G|missense_variant HSPA12A|p.L36P|1|0.44|ENSG00000165868|chr10:116707219-116707219|A/G|missense_variant HSPA12A|p.L36P|1|0.44|ENSG00000165868|chr10:116707219-116707219|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7377014160156 2 479.248015 956.481476 -0.14701 -7.0455E-05 0.056683 2.7165E-05 -0.090327 -4.3289E-05 479.2480013316728 41.934 1.4553 39.215 38.348 39.803 -2.7191 73 41 2 0 0 0 0.23855 1 7802 7802 56.177 0 1 11446000 42199 11920 28059 28076 41590 41590 0.001494709353323742 SLGEAARLP 9 Unmodified _SLGEAARLP_ 0 0 0 REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2380676269531 2 457.258717 912.50288 0.71842 0.0003285 -0.72132 -0.00032983 -0.0028999 -1.326E-06 457.2584451693532 79.394 0.51816 79.394 79.097 79.616 0 38 14 3 0 0 0 0.63326 1 15409 15409 15.847 4.2069 1 1679600 + 42200 16404 28060 28077 41591 41591 0.04312900754700877 SLGEAARLP 9 Unmodified _SLGEAARLP_ 0 0 0 REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2378234863281 2 457.258717 912.50288 -0.12488 -5.7104E-05 0.15059 6.8857E-05 0.025703 1.1753E-05 457.25878984045323 82.731 0.83796 79.032 78.551 79.389 -3.6985 49 23 3 0 0 0 0.5685 1 15795 15795 21.747 4.8044 1 2907700 + 42201 16404 28060 28077 41592 41592 0.04312900754700877 SLGEAIEVY 9 Unmodified _SLGEAIEVY_ 0 0 0 ENST00000445194.2_1_20:29873705-29874359:-|nuORF ENST00000445194.2_1_20:29873705-29874359:-|nuORF ENST00000445194.2_1_20:29873705-29874359:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2650451660156 2 490.75039 979.486227 NaN NaN NaN NaN NaN NaN NaN 57.406 1 57.406 56.906 57.906 0 0 0 0 0.079869 1 10974 10974 42.095 2.1372 1 42202 9929 28061 28078 41593 41593 -0.004336449219181304 SLGERRSYC 9 Unmodified _SLGERRSYC_ 0 0 0 L1MB4_dup8349|chr19:41722393-41722883:-|1.915539018183746|0.0855613051879158|4.48|472.0|12|2|sense L1MB4_dup8349|chr19:41722393-41722883:-|1.915539018183746|0.0855613051879158|4.48|472.0|12|2|sense L1MB4_dup8349|chr19:41722393-41722883:-|1.915539018183746|0.0855613051879158|4.48|472.0|12|2|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55938720703125 3 357.506436 1069.49748 0.72099 0.00025776 -0.36695 -0.00013119 0.35404 0.00012657 357.5061819898496 24.42 0.34389 22.772 22.649 22.993 -1.6482 15 9 3 0 0 0 0.82357 1 4277 4277 10.8 7.4799 1 330430 42203 12021 28062 28079 41594 41594 -0.03449146099410427 SLGERRSYC 9 Unmodified _SLGERRSYC_ 0 0 0 L1MB4_dup8349|chr19:41722393-41722883:-|1.915539018183746|0.0855613051879158|4.48|472.0|12|2|sense L1MB4_dup8349|chr19:41722393-41722883:-|1.915539018183746|0.0855613051879158|4.48|472.0|12|2|sense L1MB4_dup8349|chr19:41722393-41722883:-|1.915539018183746|0.0855613051879158|4.48|472.0|12|2|sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 357.506436 1069.49748 0.010562 3.7759E-06 -0.025751 -9.2062E-06 -0.015189 -5.4302E-06 357.5062371411343 24.322 0.27532 22.788 22.644 22.919 -1.5342 0.0079077 0.0001994 NaN 10.8 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 344460 42204 12021 28062 28079 -0.03449146099410427 SLGEWRAP 8 Unmodified _SLGEWRAP_ 0 0 0 REV__ENST00000564969.5_1_16:89805773-89806175:-|nuORF REV__ENST00000564969.5_1_16:89805773-89806175:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2381591796875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 88.019 1 88.019 87.519 88.519 0 0 0 0 0.19492 1 17177 17177 26.341 0 1 + 42205 23103 28063 28080 41595 41595 0.00036345066178000707 SLGEWRAP 8 Unmodified _SLGEWRAP_ 0 0 0 REV__ENST00000564969.5_1_16:89805773-89806175:-|nuORF REV__ENST00000564969.5_1_16:89805773-89806175:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23858642578125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 92.025 1 87.931 87.431 88.431 -4.0946 0 0 0 0.19492 1 17529 17529 26.341 0 1 + 42206 23103 28063 28080 41596 41596 0.00036345066178000707 SLGEWRAP 8 Unmodified _SLGEWRAP_ 0 0 0 REV__ENST00000564969.5_1_16:89805773-89806175:-|nuORF REV__ENST00000564969.5_1_16:89805773-89806175:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384033203125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 91.741 1 87.932 87.432 88.432 -3.8083 0 0 0 0.19492 1 17567 17567 26.341 0 1 + 42207 23103 28063 28080 41597 41597 0.00036345066178000707 SLGFQHAAF 9 Unmodified _SLGFQHAAF_ 0 0 0 ENSG00000111254|ENST00000228850|AKAP3 ENSG00000111254|ENST00000228850|AKAP3 ENSG00000111254|ENST00000228850|AKAP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 489.2359924316406 2 489.245609 976.476666 NaN NaN NaN NaN NaN NaN NaN 146.3 1 146.3 145.8 146.8 0 0 0 0 0.23508 1 29254 29254 8.5933 0 1 42208 2612 28064 28081 41598 41598 -0.012513684167743122 SLGHGYDYYDA 11 Unmodified _SLGHGYDYYDA_ 0 0 0 REV__ENSG00000131773|ENST00000355849|KHDRBS3 REV__ENSG00000131773|ENST00000355849|KHDRBS3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7601928710938 2 630.762017 1259.50948 NaN NaN NaN NaN NaN NaN NaN 151.81 1 147.06 146.56 147.56 -4.7523 0 0 0 0.23324 1 30166 30166 5.7319 0 1 + 42209 16089 28065 28082 41599 41599 -0.10989250875218204 SLGIGHRLLK 10 Unmodified _SLGIGHRLLK_ 0 0 0 REV__PPAT|p.K178Nfs*35|1|0.04|ENSG00000128059|chr4:56403157-56403167|TGGGTGCTTCC/-|frameshift_variant REV__PPAT|p.K178Nfs*35|1|0.04|ENSG00000128059|chr4:56403157-56403167|TGGGTGCTTCC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.766845703125 2 547.345658 1092.67676 0.48156 0.00026358 2.2386 0.0012253 2.7201 0.0014889 547.8506626238649 155.98 0.3501 150.72 150.54 150.89 -5.2526 13 9 2 0 0 0 0.78938 1 30219 30219 21.537 3.3906 1 693500 + 42210 15913 28066 28083 41600 41600 0.13413106250845885 SLGIRPNY 8 Unmodified _SLGIRPNY_ 0 0 0 nc|ENSG00000140479|P29122-3|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;nc|ENSG00000140479|P29122-6|PCSK6;PCSK6|p.K290T|1|0.34|ENSG00000140479|chr15:101398531-101398531|T/G|missense_variant nc|ENSG00000140479|P29122-3|PCSK6 nc|ENSG00000140479|P29122-3|PCSK6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2445983886719 2 460.253434 918.492316 NaN NaN NaN NaN NaN NaN NaN 89.178 1 85.134 84.634 85.634 -4.0443 0 0 0 0.21486 1 16992 16992 9.3474 0.75416 1 42211 4304 28067 28084 41601 41601 0.02980918100274721 SLGKATLLL 9 Unmodified _SLGKATLLL_ 0 0 0 REV__ENST00000262419.10_2_17:44249328-44269907:-|nuORF REV__ENST00000262419.10_2_17:44249328-44269907:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2301940917969 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 88.525 1 84.732 84.232 85.232 -3.7926 0 0 0 0.19711 1 17318 17318 0.12781 0 1 + 42212 20198 28068 28085 41602 41602 0.1193611897106166 SLGKIFAL 8 Unmodified _SLGKIFAL_ 0 0 0 SLC26A6|p.V540*|2|0.21|ENSG00000225697|chr3:48628696-48628696|C/-|frameshift_variant;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;ENST00000485361.1_1_3:48668404-48668690:-|nuORF;ENST00000496469.1_1_3:48667303-48668690:-|nuORF;ENST00000489483.5_1_3:48665668-48668656:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6 SLC26A6|p.V540*|2|0.21|ENSG00000225697|chr3:48628696-48628696|C/-|frameshift_variant SLC26A6|p.V540*|2|0.21|ENSG00000225697|chr3:48628696-48628696|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2549133300781 2 424.765646 847.516739 0.0056054 2.381E-06 0.23458 9.9642E-05 0.24019 0.00010202 424.7656853646498 157.45 0.56644 152.66 152.34 152.91 -4.7885 18 15 2 0 0 0 0.10891 1 31292 31292 61.357 13.012 1 823820 42213 7787 28069 28086 41603 41603 0.08688178253805745 SLGKIFAL 8 Unmodified _SLGKIFAL_ 0 0 0 SLC26A6|p.V540*|2|0.21|ENSG00000225697|chr3:48628696-48628696|C/-|frameshift_variant;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;ENST00000485361.1_1_3:48668404-48668690:-|nuORF;ENST00000496469.1_1_3:48667303-48668690:-|nuORF;ENST00000489483.5_1_3:48665668-48668656:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6 SLC26A6|p.V540*|2|0.21|ENSG00000225697|chr3:48628696-48628696|C/-|frameshift_variant SLC26A6|p.V540*|2|0.21|ENSG00000225697|chr3:48628696-48628696|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 424.765646 847.516739 0.1414 6.0061E-05 0.0046342 1.9684E-06 0.14603 6.2029E-05 424.76565693916626 158.08 0.39999 152.81 152.62 153.02 -5.2748 0.074282 -9.7151E-05 NaN 61.357 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1033000 42214 7787 28069 28086 0.08688178253805745 SLGKKAKRFLG 11 Unmodified _SLGKKAKRFLG_ 0 0 0 ENSG00000166592|ENST00000299759|RRAD ENSG00000166592|ENST00000299759|RRAD ENSG00000166592|ENST00000299759|RRAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3013916015625 2 602.879865 1203.74518 0.44566 0.00026868 -0.55016 -0.00033168 -0.1045 -6.2999E-05 603.3805090485052 144.45 0.20935 139.39 139.21 139.42 -5.0671 7 5 2 0 0 0 0.95337 1 27867 27867 5.7319 1.4026 1 15712000 42215 5735 28070 28087 41604 41604 0.15145350830675852 SLGKRELI 8 Unmodified _SLGKRELI_ 0 0 0 REV__IQSEC2|p.Q1376Sfs*21|1|0.15|ENSG00000124313|chrX:53234560-53234560|G/-|frameshift_variant REV__IQSEC2|p.Q1376Sfs*21|1|0.15|ENSG00000124313|chrX:53234560-53234560|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2381896972656 2 458.284734 914.554916 -0.22688 -0.00010398 0.60331 0.00027649 0.37643 0.00017251 458.2849795338799 72.128 0.78133 68.817 68.388 69.169 -3.3107 39 21 2 0 0 0 0.44459 1 14020 14020 48.346 0 1 7725000 + 42216 15773 28071 28088 41605 41605 0.09422064168484212 SLGKSMKR 8 Unmodified _SLGKSMKR_ 0 0 0 REV__ENST00000358465.6_1_1:114948043-114948136:-|nuORF REV__ENST00000358465.6_1_1:114948043-114948136:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.76348876953125 2 453.763112 905.511671 NaN NaN NaN NaN NaN NaN NaN 115.29 1 110.97 110.47 111.47 -4.3136 0 0 0 0.23025 1 22195 22195 0.25148 0.18749 1 + 42217 20835 28072 28089 41606 41606 0.05513551119543081 SLGLAQPASA 10 Unmodified _SLGLAQPASA_ 0 0 0 ENPP6|p.A13S|1|0.28|ENSG00000164303|chr4:184217783-184217783|C/A|missense_variant ENPP6|p.A13S|1|0.28|ENSG00000164303|chr4:184217783-184217783|C/A|missense_variant ENPP6|p.A13S|1|0.28|ENSG00000164303|chr4:184217783-184217783|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2336120605469 2 457.750724 913.486896 0.30661 0.00014035 0.68497 0.00031354 0.99158 0.0004539 457.7510035537264 24.427 0.68301 24.427 24.032 24.715 0 33 19 3 0 0 0 0.11647 1 4248 4248 55.503 11.73 1 2305400 42218 950 28073 28090 41607 41607 0.026691945178072274 SLGLDRRDY 9 Unmodified _SLGLDRRDY_ 0 0 0 REV__ENST00000540112.1_3_11:60703176-60704376:+|nuORF REV__ENST00000540112.1_3_11:60703176-60704376:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7869262695312 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 80.553 1 80.553 80.053 81.053 0 0 0 0 0.19674 1 15684 15684 2.6312 2.3658 1 + 42219 13870 28074 28091 41608 41608 0.008587693238041538 SLGLIFNSITS 11 Unmodified _SLGLIFNSITS_ 0 0 0 REV__tr|U7T5S3|U7T5S3_FUSNUPTSsystem,fructose-specificIICcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00064PE=4SV=1 REV__tr|U7T5S3|U7T5S3_FUSNUPTSsystem,fructose-specificIICcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00064PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3225708007812 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 116.4 1 116.4 115.9 116.9 0 0 0 0 0.22632 1 22920 22920 1.4074 1.142 1 + 42220 25422 28075 28092 41609 41609 0.05410263957674033 SLGLKYPVK 9 Unmodified _SLGLKYPVK_ 0 0 0 REV__ENSG00000144369|ENST00000304698|FAM171B REV__ENSG00000144369|ENST00000304698|FAM171B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 502.6292419433594 2 502.810585 1003.60662 -0.048251 -2.4261E-05 0.24031 0.00012083 0.19206 9.6568E-05 502.8107883307567 160.52 0.63394 155.29 154.94 155.58 -5.2298 28 17 2 0 0 0 0.71527 1 31105 31105 13.906 3.0821 1 2267200 + 42221 16778 28076 28093 41610 41610 0.10495807862366746 SLGLKYPVK 9 Unmodified _SLGLKYPVK_ 0 0 0 REV__ENSG00000144369|ENST00000304698|FAM171B REV__ENSG00000144369|ENST00000304698|FAM171B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 502.810585 1003.60662 0.20375 0.00010245 0.31275 0.00015725 0.5165 0.0002597 502.8106216226346 155.32 0.58621 155.32 155.04 155.62 0 0.11607 -2.4154E-05 NaN 13.906 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2838100 + 42222 16778 28076 28093 0.10495807862366746 SLGLKYPVK 9 Unmodified _SLGLKYPVK_ 0 0 0 REV__ENSG00000144369|ENST00000304698|FAM171B REV__ENSG00000144369|ENST00000304698|FAM171B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 502.810585 1003.60662 0.14611 7.3467E-05 0.44173 0.00022211 0.58784 0.00029557 502.8106669707075 159.82 0.64043 155.02 154.76 155.4 -4.7952 -0.17454 0.00010555 NaN 13.906 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2403700 + 42223 16778 28076 28093 0.10495807862366746 SLGLKYPVK 9 Unmodified _SLGLKYPVK_ 0 0 0 REV__ENSG00000144369|ENST00000304698|FAM171B REV__ENSG00000144369|ENST00000304698|FAM171B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 502.810585 1003.60662 0.3213 0.00016155 0.27718 0.00013937 0.59848 0.00030092 502.81058936937 160.42 0.77444 155.17 154.89 155.67 -5.2526 -0.028507 -5.9924E-05 NaN 13.906 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2657500 + 42224 16778 28076 28093 0.10495807862366746 SLGLPLLGIRI 11 Unmodified _SLGLPLLGIRI_ 0 0 0 REV__ENST00000569069.1_1_15:75658861-75660070:-|nuORF REV__ENST00000569069.1_1_15:75658861-75660070:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3360595703125 2 576.379166 1150.74378 NaN NaN NaN NaN NaN NaN NaN 161.93 1 157.14 156.64 157.64 -4.7898 0 0 0 0.2367 1 32206 32206 2.9952 0 1 + 42225 23152 28077 28094 41611 41611 0.174437167419228 SLGLRMEEM 9 Unmodified _SLGLRMEEM_ 0 0 0 ENST00000496494.5_1_8:72111577-72234167:-|nuORF;nc|ENSG00000104313|Q99502-2|EYA1;ENSG00000104313|ENST00000340726|EYA1 ENST00000496494.5_1_8:72111577-72234167:-|nuORF ENST00000496494.5_1_8:72111577-72234167:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2830810546875 2 533.257002 1064.49945 0.084107 4.4851E-05 -3.0083 -0.0016042 -2.9242 -0.0015594 533.2551937168251 93.921 0.34796 89.93 89.759 90.107 -3.9907 12 9 2 0 0 0 0.76271 1 18414 18414 10.074 5.7447 1 974580 42226 10579 28078 28095 41612 41612 -0.030218534058349178 SLGPHRPAE 9 Unmodified _SLGPHRPAE_ 0 0 0 ENST00000295951.7_1_3:57742468-57743248:+|nuORF ENST00000295951.7_1_3:57742468-57743248:+|nuORF ENST00000295951.7_1_3:57742468-57743248:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78912353515625 2 482.253966 962.493378 0.0095428 4.602E-06 -1.179 -0.00056858 -1.1695 -0.00056397 482.2533518554543 44.099 0.86056 41.333 40.94 41.801 -2.7661 52 24 3 0 0 0 0.71527 1 7896 7896 19.257 3.4098 1 1506800 42227 8498 28079 28096 41613 41613 0.010631324691757982 SLGPPLISPV 10 Unmodified _SLGPPLISPV_ 0 0 0 REV__ENST00000464431.1_1_3:127395028-127395444:+|nuORF REV__ENST00000464431.1_1_3:127395028-127395444:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25555419921875 2 490.294768 978.574983 NaN NaN NaN NaN NaN NaN NaN 161.76 1 156.62 156.12 157.12 -5.1438 0 0 0 0.22588 1 31414 31414 6.2058 0 1 + 42228 21936 28080 28097 41614 41614 0.08483815108422732 SLGPPPCG 8 Unmodified _SLGPPPCG_ 0 0 0 REV__FOXN1|p.P416Qfs*134|1|0.33|ENSG00000109101|chr17:28534814-28534814|C/-|frameshift_variant REV__FOXN1|p.P416Qfs*134|1|0.33|ENSG00000109101|chr17:28534814-28534814|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 364.17498779296875 2 364.175807 726.337061 NaN NaN NaN NaN NaN NaN NaN 91.287 1 91.287 90.787 91.787 0 0 0 0 0.23366 1 17837 17837 0.0082765 0 1 + 42229 15151 28081 28098 41615 41615 -0.03705449025642338 SLGPSAAEINQ 11 Unmodified _SLGPSAAEINQ_ 0 0 0 nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7728881835938 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 162.28 1 157.13 156.63 157.63 -5.1438 0 0 0 0.23018 1 31521 31521 8.1555 0.54658 1 42230 2029 28082 28099 41616 41616 -0.004043566329528403 SLGPTWWGRQG 11 Unmodified _SLGPTWWGRQG_ 0 0 0 REV__ENST00000398645.6_1_11:67022670-67022724:+|nuORF REV__ENST00000398645.6_1_11:67022670-67022724:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7763671875 2 622.812179 1243.60981 NaN NaN NaN NaN NaN NaN NaN 163.42 1 158.35 157.85 158.85 -5.0648 0 0 0 0.22943 1 31798 31798 8.7454 1.1365 1 + 42231 21331 28083 28100 41617 41617 -0.002255490309153174 SLGPVLCIYT 10 Unmodified _SLGPVLCIYT_ 0 0 0 REV__ST6GALNAC2|p.F297Lfs*15|1|0.29|ENSG00000070731|chr17:76567519-76567519|A/-|frameshift_variant REV__ST6GALNAC2|p.F297Lfs*15|1|0.29|ENSG00000070731|chr17:76567519-76567519|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2859497070312 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 162.62 1 157.43 156.93 157.93 -5.1878 0 0 0 0.22588 1 31585 31585 10.074 0 1 + 42232 24741 28084 28101 41618 41618 0.02792151511107477 SLGPWCVGEF 10 Unmodified _SLGPWCVGEF_ 0 0 0 REV__ENST00000567421.1_1_15:42570725-42619667:+|nuORF REV__ENST00000567421.1_1_15:42570725-42619667:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7760620117188 2 547.75241 1093.49027 NaN NaN NaN NaN NaN NaN NaN 156.43 1 156.43 155.93 156.93 0 0 0 0 0.22588 1 31384 31384 6.7232 0 1 + 42233 19656 28085 28102 41619 41619 -0.05273878699836132 SLGRFRGRF 9 Unmodified _SLGRFRGRF_ 0 0 0 ENSG00000156374|ENST00000369847|PCGF6;nc|ENSG00000156374|Q9BYE7-3|PCGF6 ENSG00000156374|ENST00000369847|PCGF6 ENSG00000156374|ENST00000369847|PCGF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7709350585938 2 548.312149 1094.60975 0.36327 0.00019918 3.1593 0.0017323 3.5225 0.0019314 548.3121400982774 143.08 0.20837 138.18 138.09 138.3 -4.8982 6 5 2 0 0 0 0.80521 1 27605 27605 10.824 0.75 1 983600 42234 5085 28086 28103 41620 41620 0.0662249575975693 SLGRTRRK 8 Unmodified _SLGRTRRK_ 0 0 0 REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 487.2574157714844 2 487.304324 972.594095 1.0497 0.00051152 2.8925 0.0014095 3.9421 0.001921 487.3058742339345 27.464 0.24658 25.682 25.596 25.842 -1.7821 10 6 2 0 0 0 0.96284 1 4902 4902 8.5933 0 1 871780 + 42235 12974 28087 28104 41621 41621 0.10670209242698547 SLGSEPTAPG 10 Unmodified _SLGSEPTAPG_ 0 0 0 nc|ENSG00000012211|O43900-2|PRICKLE3;ENSG00000012211|ENST00000599218|PRICKLE3 nc|ENSG00000012211|O43900-2|PRICKLE3 nc|ENSG00000012211|O43900-2|PRICKLE3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22467041015625 2 458.224539 914.434526 0.58336 0.00026731 -1.0178 -0.00046637 -0.43442 -0.00019906 458.22400815825245 45.951 1.2127 45.951 45.413 46.626 0 89 34 4 0 0 0 0.664 1 8545 8545 14.838 0.25658 1 24594000 42236 1086 28088 28105 41622 41622 -0.026113886158100286 SLGSKQAA 8 Unmodified _SLGSKQAA_ 0 0 0 REV__UNC13C|p.R1057Q|1|0.35|ENSG00000137766|chr15:54237632-54237632|G/A|missense_variant REV__UNC13C|p.R1057Q|1|0.35|ENSG00000137766|chr15:54237632-54237632|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2109680175781 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 99.949 1 95.79 95.29 96.29 -4.1594 0 0 0 0.23366 1 19640 19640 0.12286 0.049601 1 + 42237 25515 28089 28106 41623 41623 0.018129672835243582 SLGSSGLGGNL 11 Unmodified _SLGSSGLGGNL_ 0 0 0 REV__nc|ENSG00000149187|Q92879-5|CELF1 REV__nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78668212890625 2 481.251089 960.487624 0.17266 8.3091E-05 -0.72688 -0.00034981 -0.55422 -0.00026672 481.25074098164595 152.79 0.66927 147.52 147.15 147.81 -5.2669 30 18 2 0 0 0 0.68099 1 29643 29643 13.042 0.51092 1 2419300 + 42238 17001 28090 28107 41624 41624 0.0057998916687438395 SLGTDRSNSNE 11 Unmodified _SLGTDRSNSNE_ 0 0 0 REV__nc|ENSG00000152592|Q13316-2|DMP1 REV__nc|ENSG00000152592|Q13316-2|DMP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2664794921875 2 590.265456 1178.51636 NaN NaN NaN NaN NaN NaN NaN 91.753 1 87.945 87.445 88.445 -3.8083 0 0 0 0.2196 1 17571 17571 0.03141 0.018144 1 + 42239 17115 28091 28108 41625 41625 -0.06575937994648484 SLGTFERAV 9 Unmodified _SLGTFERAV_ 0 0 0 TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant;TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant;ENSG00000100154|ENST00000397906|TTC28;TTC28|p.V1305Wfs*29|1|0.31|ENSG00000100154|chr22:28094099-28094099|C/-|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2639465332031 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 92.135 1 88.21 87.71 88.71 -3.9251 0 0 0 0.11195 1 18041 18041 36.127 0 1 42240 1934 28092 28109 41626 41626 0.023328834091330464 SLGTTTETEM 10 Unmodified _SLGTTTETEM_ 0 0 0 nc|ENSG00000144285|P35498-3|SCN1A nc|ENSG00000144285|P35498-3|SCN1A nc|ENSG00000144285|P35498-3|SCN1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55938720703125 3 357.162112 1068.46451 0.7178 0.00025637 0.52667 0.00018811 1.2445 0.00044448 357.16230629728926 24.447 0.24293 22.799 22.683 22.926 -1.6482 9 6 2 0 0 0 0.91149 1 4277 4277 3.5871 3.5871 1 634320 42241 12364 28093 28110 41627 41627 -0.06698817732785756 SLGVTKIYEI 10 Unmodified _SLGVTKIYEI_ 0 0 0 tr|U7T242|U7T242_FUSNUMalonylCoA-acylcarrierproteintransacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00462PE=3SV=1 tr|U7T242|U7T242_FUSNUMalonylCoA-acylcarrierproteintransacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00462PE=3SV=1 tr|U7T242|U7T242_FUSNUMalonylCoA-acylcarrierproteintransacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00462PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21612548828125 3 374.885018 1121.63323 -0.031557 -1.183E-05 -0.11649 -4.3671E-05 -0.14805 -5.5502E-05 374.8848994553058 98.244 0.55593 98.244 97.984 98.54 0 28 15 2 0 0 0 0.75318 1 19226 19226 4.7159 0.52642 1 1761800 42242 26339 28094 28111 41628 41628 0.07727451963046406 SLGWEQPI 8 Unmodified _SLGWEQPI_ 0 0 0 REV__GGCX|p.R83W|1|0.43|ENSG00000115486|chr2:85559043-85559043|G/A|missense_variant REV__GGCX|p.R83W|1|0.43|ENSG00000115486|chr2:85559043-85559043|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2397766113281 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 139.91 1 135.06 134.56 135.56 -4.8492 0 0 0 0.14536 1 26976 26976 38.151 2.107 1 + 42243 23571 28095 28112 41629 41629 -0.0016619051090174253 SLGYHNPK 8 Unmodified _SLGYHNPK_ 0 0 0 REV__nc|ENSG00000091128|A4D0S4-2|LAMB4 REV__nc|ENSG00000091128|A4D0S4-2|LAMB4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23773193359375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 121.38 1 116.69 116.19 117.19 -4.6873 0 0 0 0.21486 1 23303 23303 7.9102 0 1 + 42244 14563 28096 28113 41630 41630 0.00036345066178000707 SLHCNGSFSW 10 Unmodified _SLHCNGSFSW_ 0 0 0 ENST00000343307.4_1_13:31904045-31904171:+|nuORF ENST00000343307.4_1_13:31904045-31904171:+|nuORF ENST00000343307.4_1_13:31904045-31904171:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 379.8518371582031 3 379.830919 1136.47093 -0.012322 -4.6804E-06 0.81289 0.00030876 0.80056 0.00030408 379.83123796729205 46.178 0.65425 43.313 42.968 43.622 -2.8653 34 18 2 0 0 0 0.51405 1 8350 8350 3.8763 0.28927 1 2055400 42245 8875 28097 28114 41631 41631 -0.09184834990742274 SLHCNGSFSW 10 Unmodified _SLHCNGSFSW_ 0 0 0 ENST00000343307.4_1_13:31904045-31904171:+|nuORF ENST00000343307.4_1_13:31904045-31904171:+|nuORF ENST00000343307.4_1_13:31904045-31904171:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 379.830919 1136.47093 -0.25065 -9.5206E-05 1.1129 0.00042272 0.86226 0.00032751 379.83126646423113 46.179 0.62257 43.338 43.003 43.626 -2.8409 -0.0084009 -8.3649E-05 NaN 3.8763 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2250300 42246 8875 28097 28114 -0.09184834990742274 SLHCNGSFSW 10 Unmodified _SLHCNGSFSW_ 0 0 0 ENST00000343307.4_1_13:31904045-31904171:+|nuORF ENST00000343307.4_1_13:31904045-31904171:+|nuORF ENST00000343307.4_1_13:31904045-31904171:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 379.830919 1136.47093 -0.012322 -4.6804E-06 0.81289 0.00030876 0.80056 0.00030408 379.83123796729205 46.178 0.65425 43.313 42.968 43.622 -2.8653 -0.03398 -0.00042552 NaN 3.8763 34 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2055400 42247 8875 28097 28114 -0.09184834990742274 SLHCNGSFSW 10 Unmodified _SLHCNGSFSW_ 0 0 0 ENST00000343307.4_1_13:31904045-31904171:+|nuORF ENST00000343307.4_1_13:31904045-31904171:+|nuORF ENST00000343307.4_1_13:31904045-31904171:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 379.830919 1136.47093 -0.77903 -0.0002959 1.6234 0.00061661 0.84436 0.00032071 379.8314804792873 46.255 0.75351 43.389 42.963 43.716 -2.8666 0.042381 0.00049803 NaN 3.8763 33 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2009500 42248 8875 28097 28114 -0.09184834990742274 SLHDRGCLPP 10 Unmodified _SLHDRGCLPP_ 0 0 0 REV__nc|ENSG00000189091|Q15393-3|SF3B3 REV__nc|ENSG00000189091|Q15393-3|SF3B3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.775146484375 2 547.774208 1093.53386 -0.02239 -1.2265E-05 0.091308 5.0016E-05 0.068918 3.7751E-05 547.7743309017609 41.635 3.2915 38.984 37.107 40.398 -2.651 280 93 4 0 0 0 0.53552 1 7696 7696 22.736 22.736 1 38930000 + 42249 19192 28098 28115 41632 41632 -0.009162692026848163 SLHEEMSPD 9 Unmodified _SLHEEMSPD_ 0 0 0 REV__nc|nan|Q5SQH8|C6orf136 REV__nc|nan|Q5SQH8|C6orf136 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2655029296875 2 522.718764 1043.42298 -0.28178 -0.00014729 -3.8229 -0.0019983 -4.1047 -0.0021456 522.7178123236571 87.642 0.11199 83.85 83.794 83.906 -3.7926 4 2 2 0 0 0 0.85111 1 17143 17143 6.7232 3.1267 1 642910 + 42250 19546 28099 28116 41633 41633 -0.0969995370144261 SLHEEMSPD 9 Unmodified _SLHEEMSPD_ 0 0 0 REV__nc|nan|Q5SQH8|C6orf136 REV__nc|nan|Q5SQH8|C6orf136 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 522.718764 1043.42298 0.19809 0.00010354 -8.372 -0.0043762 -8.174 -0.0042727 523.2155620770961 87.497 0.14467 83.747 83.692 83.836 -3.7501 -0.051401 -0.00038579 NaN 6.7232 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 956670 + 42251 19546 28099 28116 -0.0969995370144261 SLHEYVHLVY 10 Unmodified _SLHEYVHLVY_ 0 0 0 REV__nc|ENSG00000026751|Q9NQ25-5|SLAMF7 REV__nc|ENSG00000026751|Q9NQ25-5|SLAMF7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7767944335938 2 630.324588 1258.63462 NaN NaN NaN NaN NaN NaN NaN 38.103 1 35.661 35.161 36.161 -2.4419 0 0 0 0.22588 1 6769 6769 6.2058 1.3088 1 + 42252 14005 28100 28117 41634 41634 0.015650860518235277 SLHFLQQEMQ 10 Unmodified _SLHFLQQEMQ_ 0 0 0 CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant;CAMSAP2|p.M1437*|7|0.32|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2 CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant CAMSAP2|p.K1052Rfs*43|1|0.32|ENSG00000118200|chr1:200849887-200849887|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7562255859375 2 630.805705 1259.59686 NaN NaN NaN NaN NaN NaN NaN 137.69 1 133.05 132.55 133.55 -4.6413 0 0 0 0.22588 1 27179 27179 9.3831 0 1 42253 373 28101 28118 41635 41635 -0.022557482053116473 SLHHHISV 8 Unmodified _SLHHHISV_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24981689453125 2 465.251226 928.487899 NaN NaN NaN NaN NaN NaN NaN 72.047 1 68.419 67.919 68.919 -3.6275 0 0 0 0.19954 1 13598 13598 24.674 0.65332 1 42254 3249 28102 28119 41636 41636 0.02079453677379206 SLHHLQPP 8 Unmodified _SLHHLQPP_ 0 0 0 ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENST00000594998.1_1_19:50338170-50339752:+|nuORF ENSG00000104973|ENST00000312865|MED25 ENSG00000104973|ENST00000312865|MED25 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1701354980469 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 106.17 1 106.17 105.67 106.67 0 0 0 0 0.21486 1 20868 20868 1.6526 0 1 42255 2273 28103 28120 41637 41637 0.026003378201380656 SLHHRPLGP 9 Unmodified _SLHHRPLGP_ 0 0 0 ENST00000594089.1_1_11:64546495-64546588:+|nuORF ENST00000594089.1_1_11:64546495-64546588:+|nuORF ENST00000594089.1_1_11:64546495-64546588:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.19061279296875 3 338.526159 1012.55665 -0.34812 -0.00011785 -3.6508 -0.0012359 -3.9989 -0.0013537 338.525691053321 29.228 0.76094 29.228 29.021 29.782 0 29 21 2 0 0 0 0.81492 1 5217 5217 1.0715 0 1 416160 42256 11651 28104 28121 41638 41638 0.05087117977075195 SLHLEYEA 8 Unmodified _SLHLEYEA_ 0 0 0 ENST00000390426.2_3_14:22204475-22204995:+|nuORF ENST00000390426.2_3_14:22204475-22204995:+|nuORF ENST00000390426.2_3_14:22204475-22204995:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2352294921875 2 481.234907 960.455261 -0.31506 -0.00015162 -0.18315 -8.8136E-05 -0.49821 -0.00023975 481.2349099236572 62.798 1.1825 62.798 61.939 63.121 0 56 33 3 0 0 0 0.66265 1 12122 12122 18.135 2.2878 1 3142000 42257 9360 28105 28122 41639 41639 -0.02654798236142142 SLHLEYEA 8 Unmodified _SLHLEYEA_ 0 0 0 ENST00000390426.2_3_14:22204475-22204995:+|nuORF ENST00000390426.2_3_14:22204475-22204995:+|nuORF ENST00000390426.2_3_14:22204475-22204995:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2353820800781 2 481.234907 960.455261 0.03111 1.4971E-05 -0.11416 -5.4938E-05 -0.08305 -3.9967E-05 481.2348417862514 66.121 0.48783 63.074 62.776 63.264 -3.047 23 13 2 0 0 0 0.66265 1 12801 12801 18.135 3.2967 1 1045000 42258 9360 28105 28122 41640 41640 -0.02654798236142142 SLHLEYEA 8 Unmodified _SLHLEYEA_ 0 0 0 ENST00000390426.2_3_14:22204475-22204995:+|nuORF ENST00000390426.2_3_14:22204475-22204995:+|nuORF ENST00000390426.2_3_14:22204475-22204995:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25396728515625 2 481.234907 960.455261 0.29455 0.00014175 -0.42037 -0.0002023 -0.12582 -6.0549E-05 481.23467486280174 66.524 0.42458 63.027 62.795 63.219 -3.4965 20 11 2 0 0 0 0.66265 1 12496 12496 18.135 4.6271 1 952300 42259 9360 28105 28122 41641 41641 -0.02654798236142142 SLHLEYEA 8 Unmodified _SLHLEYEA_ 0 0 0 ENST00000390426.2_3_14:22204475-22204995:+|nuORF ENST00000390426.2_3_14:22204475-22204995:+|nuORF ENST00000390426.2_3_14:22204475-22204995:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23419189453125 2 481.234907 960.455261 0.24942 0.00012003 -0.43167 -0.00020773 -0.18225 -8.7706E-05 481.23462649160695 66.279 0.52625 62.995 62.791 63.317 -3.2832 22 14 2 0 0 0 0.68128 1 12461 12461 16.942 1.0951 1 949860 42260 9360 28105 28122 41642 41642 -0.02654798236142142 SLHLQVRVVQ 10 Unmodified _SLHLQVRVVQ_ 0 0 0 REV__ENST00000607058.1_1_8:24771141-24771990:-|nuORF REV__ENST00000607058.1_1_8:24771141-24771990:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2538452148438 2 589.853847 1177.69314 NaN NaN NaN NaN NaN NaN NaN 46.125 1 43.259 42.759 43.759 -2.8666 0 0 0 0.22588 1 8389 8389 8.7454 0 1 + 42261 23467 28106 28123 41643 41643 0.11140187416958724 SLHNGVIQL 9 Unmodified _SLHNGVIQL_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF;COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2542419433594 2 490.779816 979.545079 0.48964 0.0002403 -0.055968 -2.7468E-05 0.43367 0.00021284 490.7797097837708 106.3 0.58385 102.21 101.92 102.5 -4.0913 31 16 2 0 0 0 0.12663 1 20424 20424 57.722 0 1 3712500 42262 3214 28107 28124 41644 41644 0.054488761630864246 SLHPSGITAP 10 Unmodified _SLHPSGITAP_ 0 0 0 REV__ENST00000424921.1_1_21:45578984-45579862:-|nuORF REV__ENST00000424921.1_1_21:45578984-45579862:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26397705078125 2 490.263999 978.513445 0.0073845 3.6203E-06 0.13078 6.4117E-05 0.13816 6.7737E-05 490.264027526858 56.438 1.1201 56.438 55.973 57.093 0 97 31 4 0 0 0 0.42569 1 10820 10820 29.082 3.6823 1 20526000 + 42263 21551 28108 28125 41645 41645 0.023328834091216777 SLHPSGITAP 10 Unmodified _SLHPSGITAP_ 0 0 0 REV__ENST00000424921.1_1_21:45578984-45579862:-|nuORF REV__ENST00000424921.1_1_21:45578984-45579862:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26397705078125 2 490.263999 978.513445 0.064146 3.1448E-05 0.10466 5.1312E-05 0.16881 8.2761E-05 490.2640316435626 59.279 1.7152 56.368 55.784 57.5 -2.9105 129 48 4 0 0 0 0.53552 1 11494 11494 22.736 3.4793 1 42586000 + 42264 21551 28108 28125 41646 41646 0.023328834091216777 SLHPSGITAP 10 Unmodified _SLHPSGITAP_ 0 0 0 REV__ENST00000424921.1_1_21:45578984-45579862:-|nuORF REV__ENST00000424921.1_1_21:45578984-45579862:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26397705078125 2 490.263999 978.513445 0.17497 8.5784E-05 0.35871 0.00017586 0.53368 0.00026164 490.26396477223466 59.697 1.4825 56.384 55.742 57.224 -3.3139 148 41 6 0 0 0 0.42569 1 11183 11183 29.082 3.6823 1 37594000 + 42265 21551 28108 28125 41647 41647 0.023328834091216777 SLHPSGITAP 10 Unmodified _SLHPSGITAP_ 0 0 0 REV__ENST00000424921.1_1_21:45578984-45579862:-|nuORF REV__ENST00000424921.1_1_21:45578984-45579862:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26397705078125 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 0.42569 1 11225 11225 29.082 3.6823 1 39769000 + 42266 21551 28108 28125 41648 41648 0.023328834091216777 SLHQRKYY 8 Unmodified _SLHQRKYY_ 0 0 0 tr|U7SWD3|U7SWD3_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00986PE=4SV=1 tr|U7SWD3|U7SWD3_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00986PE=4SV=1 tr|U7SWD3|U7SWD3_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00986PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7684326171875 2 547.790715 1093.56688 0.45205 0.00024763 -1.3895 -0.00076114 -0.93742 -0.00051351 547.7894396600394 73.96 0.55899 70.366 69.978 70.537 -3.594 20 15 2 0 0 0 0.97173 1 13973 13973 7.9102 0.62092 1 911160 42267 26246 28109 28126 41649 41649 0.02383680911657393 SLHREVEKV 9 Unmodified _SLHREVEKV_ 0 0 0 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.8778076171875 3 366.208495 1095.60366 -0.12296 -4.503E-05 0.044129 1.616E-05 -0.078834 -2.887E-05 366.2085164174712 19.482 0.28882 18.086 17.919 18.208 -1.3966 19 7 3 0 0 0 0.10537 1 3206 3206 29.082 14.243 1 1944700 42268 7684 28110 28127 41650 41650 0.059679327375761204 SLHREVEKV 9 Unmodified _SLHREVEKV_ 0 0 0 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 366.208495 1095.60366 -0.26977 -9.8793E-05 0.33294 0.00012193 0.063168 2.3133E-05 366.2085501268864 17.944 0.32274 17.944 17.767 18.09 0 -0.072891 8.3601E-05 NaN 29.082 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2943500 42269 7684 28110 28127 0.059679327375761204 SLHREVEKV 9 Unmodified _SLHREVEKV_ 0 0 0 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 366.208495 1095.60366 -0.3153 -0.00011547 0.42153 0.00015437 0.10623 3.8902E-05 366.20867296588443 19.347 0.28251 18.021 17.863 18.145 -1.3251 0.0044206 0.00018093 NaN 29.082 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1803400 42270 7684 28110 28127 0.059679327375761204 SLHRKEPI 8 Unmodified _SLHRKEPI_ 0 0 0 nc|ENSG00000164694|Q4ZHG4-2|FNDC1;ENSG00000164694|ENST00000297267|FNDC1;FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant;FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant nc|ENSG00000164694|Q4ZHG4-2|FNDC1 nc|ENSG00000164694|Q4ZHG4-2|FNDC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2601623535156 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 156.87 1 156.87 156.37 157.37 0 0 0 0 0.21323 1 31475 31475 14.582 0 1 42271 5563 28111 28128 41651 41651 0.07092582399980074 SLHRKHKE 8 Unmodified _SLHRKHKE_ 0 0 0 ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 518.1287841796875 2 517.796332 1033.57811 0.20746 0.00010742 2.5319 0.001311 2.7393 0.0014184 517.7973870976423 137.73 0.73689 137.73 137.44 138.18 0 30 20 3 0 0 0 1.0147 1 27420 27420 5.2307 0.47466 1 4792900 42272 4125 28112 28129 41652 41652 0.06266503005804225 SLHRKHKE 8 Unmodified _SLHRKHKE_ 0 0 0 ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 517.796332 1033.57811 -0.1415 -7.327E-05 3.0511 0.0015799 2.9096 0.0015066 517.7979235921033 142.11 0.73608 137.46 137.1 137.83 -4.6493 -0.04522 0.0001805 NaN 5.2307 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 6540500 42273 4125 28112 28129 0.06266503005804225 SLHRKHKE 8 Unmodified _SLHRKHKE_ 0 0 0 ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 517.796332 1033.57811 -0.53518 -0.00027711 3.3241 0.0017212 2.7889 0.0014441 517.7980183406839 142.47 0.75565 137.45 137.07 137.82 -5.0261 -0.054244 0.0004632 NaN 5.2307 43 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6065000 42274 4125 28112 28129 0.06266503005804225 SLHRKHKE 8 Unmodified _SLHRKHKE_ 0 0 0 ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 517.796332 1033.57811 0.29837 0.0001545 2.5742 0.0013329 2.8726 0.0014874 517.79761386107 142.27 0.74225 137.37 137.03 137.77 -4.8982 -0.13105 -0.0003134 NaN 5.2307 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5883700 42275 4125 28112 28129 0.06266503005804225 SLHSFIGVLN 10 Unmodified _SLHSFIGVLN_ 0 0 0 REV__tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1 REV__tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77490234375 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 154.58 1 154.58 154.08 155.08 0 0 0 0 0.22566 1 30983 30983 16.149 1.3108 1 + 42276 25218 28113 28130 41653 41653 0.04757431851635374 SLHSKFIRV 9 Unmodified _SLHSKFIRV_ 0 0 0 ENSG00000150907|ENST00000379561|FOXO1 ENSG00000150907|ENST00000379561|FOXO1 ENSG00000150907|ENST00000379561|FOXO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 363.555419921875 3 362.885464 1085.63456 -0.63654 -0.00023099 0.61745 0.00022406 -0.019095 -6.9293E-06 362.8856798775585 57.288 0.85908 54.112 53.716 54.575 -3.1761 57 23 3 0 0 0 0.069179 1 10638 10638 36.127 0 1 3074100 42277 4841 28114 28131 41654 41654 0.09517130842482402 SLHSKFIRV 9 Unmodified _SLHSKFIRV_ 0 0 0 ENSG00000150907|ENST00000379561|FOXO1 ENSG00000150907|ENST00000379561|FOXO1 ENSG00000150907|ENST00000379561|FOXO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 362.885464 1085.63456 -0.39245 -0.00014241 0.55575 0.00020167 0.1633 5.9259E-05 362.8856126168908 56.899 0.79819 54.004 53.65 54.448 -2.8944 -0.058383 0.00014429 NaN 36.127 53 22 3 NaN NaN NaN NaN 0 NaN NaN 0 4142300 42278 4841 28114 28131 0.09517130842482402 SLHSKFIRV 9 Unmodified _SLHSKFIRV_ 0 0 0 ENSG00000150907|ENST00000379561|FOXO1 ENSG00000150907|ENST00000379561|FOXO1 ENSG00000150907|ENST00000379561|FOXO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 362.885464 1085.63456 0.075851 2.7525E-05 0.061461 2.2303E-05 0.13731 4.9829E-05 362.88543345390093 57.3 0.76871 54.072 53.685 54.453 -3.2282 0.0089388 -0.00039382 NaN 36.127 52 21 3 NaN NaN NaN NaN 0 NaN NaN 0 4113900 42279 4841 28114 28131 0.09517130842482402 SLHSPVYLQ 9 Unmodified _SLHSPVYLQ_ 0 0 0 ENST00000477487.5_1_16:24815406-24816553:+|nuORF ENST00000477487.5_1_16:24815406-24816553:+|nuORF ENST00000477487.5_1_16:24815406-24816553:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.280029296875 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 146.46 1 146.46 145.96 146.96 0 0 0 0 0.23508 1 29286 29286 11.64 0.81637 1 42280 10303 28115 28132 41655 41655 0.025174564432290936 SLHSPVYLQ 9 Unmodified _SLHSPVYLQ_ 0 0 0 ENST00000477487.5_1_16:24815406-24816553:+|nuORF ENST00000477487.5_1_16:24815406-24816553:+|nuORF ENST00000477487.5_1_16:24815406-24816553:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2825927734375 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 154.2 1 154.2 153.7 154.7 0 0 0 0 0.22621 1 30904 30904 15.847 6.4641 1 42281 10303 28115 28132 41656 41656 0.025174564432290936 SLHTGERPYR 10 Unmodified _SLHTGERPYR_ 0 0 0 ENSG00000179922|ENST00000325351|ZNF784;ENST00000591479.1_1_19:56133119-56135920:-|nuORF ENSG00000179922|ENST00000325351|ZNF784 ENSG00000179922|ENST00000325351|ZNF784 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.29986572265625 3 405.879149 1214.61562 -0.5815 -0.00023602 0.3274 0.00013289 -0.2541 -0.00010313 405.8793176565359 45.041 0.62971 42.293 41.993 42.623 -2.7475 32 17 2 0 0 0 0.91149 1 8110 8110 0.13989 0.017027 1 2255600 42282 6649 28116 28133 41657 41657 0.01689549480761343 SLHTRARFV 9 Unmodified _SLHTRARFV_ 0 0 0 REV__MSTB_dup6501|chr13:43061603-43061850:-|1.279567223268373|0.2367443632259002|2.43|470.0|10|1|anti-sense REV__MSTB_dup6501|chr13:43061603-43061850:-|1.279567223268373|0.2367443632259002|2.43|470.0|10|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7788696289062 2 543.811982 1085.60941 NaN NaN NaN NaN NaN NaN NaN 159.98 1 154.73 154.23 155.23 -5.2526 0 0 0 0.23508 1 31045 31045 10.824 3.5347 1 + 42283 23882 28117 28134 41658 41658 0.07003076039904954 SLHYDTPP 8 Unmodified _SLHYDTPP_ 0 0 0 REV__ENST00000370526.3_1_X:140270028-140270391:-|nuORF REV__ENST00000370526.3_1_X:140270028-140270391:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2493591308594 2 465.2218 928.429047 NaN NaN NaN NaN NaN NaN NaN 99.58 1 95.624 95.124 96.124 -3.9564 0 0 0 0.23366 1 19121 19121 1.7423 0 1 + 42284 20984 28118 28135 41659 41659 -0.03803067407625349 SLIAGNYSH 9 Unmodified _SLIAGNYSH_ 0 0 0 REV__ENSG00000153802|ENST00000283916|TMPRSS11D REV__ENSG00000153802|ENST00000283916|TMPRSS11D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2398376464844 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 141.51 1 136.64 136.14 137.14 -4.8678 0 0 0 0.19652 1 27307 27307 0.073264 0 1 + 42285 17156 28119 28136 41660 41660 -0.015319761420073519 SLIDLESKNEL 11 Unmodified _SLIDLESKNEL_ 0 0 0 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.773681640625 2 630.837725 1259.6609 0.94405 0.00059554 -0.49477 -0.00031212 0.44928 0.00028342 630.8367974697412 134.17 0.45459 129.53 129.21 129.67 -4.6399 17 12 2 0 0 0 0.83902 1 26450 26450 20.581 7.5385 1 3118700 42286 4870 28120 28137 41661 41661 0.041453104326365064 SLIEKYFSV 9 Unmodified _SLIEKYFSV_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77392578125 2 543.297507 1084.58046 0.53774 0.00029215 0.0083246 4.5227E-06 0.54607 0.00029668 543.7992795790727 161.17 0.59554 155.92 155.56 156.16 -5.2526 29 16 3 0 0 0 0.15128 1 31268 31268 43.982 4.0321 1 3312100 42287 6791 28121 28138 41662 41662 0.04155493900225338 SLIERDLKL 9 Unmodified _SLIERDLKL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7865600585938 2 543.829506 1085.64446 -0.078565 -4.2726E-05 0.80191 0.0004361 0.72334 0.00039337 543.8300289143066 111.28 0.86864 106.85 106.51 107.38 -4.4231 38 24 2 0 0 0 0.25795 1 21917 21917 47.732 12.8 1 4305900 42288 4411 28122 28139 41663 41663 0.10506274057183873 SLIERDLKL 9 Unmodified _SLIERDLKL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7767333984375 2 543.829506 1085.64446 0.70069 0.00038106 0.039635 2.1555E-05 0.74033 0.00040261 543.8294868161395 111.14 0.59393 106.91 106.55 107.15 -4.2289 38 16 3 0 0 0 0.29034 1 21364 21364 46.022 9.8953 1 4755400 42289 4411 28122 28139 41664 41664 0.10506274057183873 SLIFFRKA 8 Unmodified _SLIFFRKA_ 0 0 0 REV__ENST00000507668.6_1_5:79436329-79436551:-|nuORF REV__ENST00000507668.6_1_5:79436329-79436551:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 491.29833984375 2 491.297645 980.580737 NaN NaN NaN NaN NaN NaN NaN 149.88 1 144.76 144.26 145.26 -5.1204 0 0 0 0.23025 1 29044 29044 0.25148 0 1 + 42290 22504 28123 28140 41665 41665 0.08966958410758252 SLIGHLQTL 9 Unmodified _SLIGHLQTL_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 491.7740478515625 2 491.290017 980.565481 0.093667 4.6018E-05 -0.12765 -6.2712E-05 -0.03398 -1.6694E-05 491.28998085049534 133.69 1.1547 129.05 128.55 129.7 -4.6399 114 32 5 0 0 0 0.38759 1 26435 26435 22.736 13.823 1 73954000 42291 4159 28124 28141 41666 41666 0.07442046822893644 SLIGHLQTL 9 Unmodified _SLIGHLQTL_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 491.290017 980.565481 0.11192 5.4986E-05 -0.12238 -6.0123E-05 -0.010456 -5.1368E-06 491.2899716895533 133.92 1.0687 129.05 128.61 129.68 -4.8726 -0.022717 -3.5552E-05 NaN 22.736 114 30 5 NaN NaN NaN NaN 0 NaN NaN 0 59605000 42292 4159 28124 28141 0.07442046822893644 SLIGHLQTL 9 Unmodified _SLIGHLQTL_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 491.290017 980.565481 -0.023648 -1.1618E-05 -0.005011 -2.4618E-06 -0.028658 -1.408E-05 491.2900513646736 133.93 1.1314 129.11 128.66 129.79 -4.8175 0.041439 7.977E-05 NaN 22.736 117 31 5 NaN NaN NaN NaN 0 NaN NaN 0 64716000 42293 4159 28124 28141 0.07442046822893644 SLIIHKRI 8 Unmodified _SLIIHKRI_ 0 0 0 ENSG00000214029|ENST00000537226|ZNF891 ENSG00000214029|ENST00000537226|ZNF891 ENSG00000214029|ENST00000537226|ZNF891 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.267578125 2 490.324194 978.633835 NaN NaN NaN NaN NaN NaN NaN 139.75 1 139.75 139.25 140.25 0 0 0 0 0.21486 1 27792 27792 4.756 0 1 42294 7718 28125 28142 41667 41667 0.14366336193427287 SLIITWIKGKT 11 Unmodified _SLIITWIKGKT_ 0 0 0 REV__tr|U7SWZ5|U7SWZ5_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01226PE=4SV=1 REV__tr|U7SWZ5|U7SWZ5_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01226PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7542724609375 2 630.389731 1258.76491 0.74256 0.00046811 -0.40816 -0.0002573 0.33441 0.00021081 630.389486664783 100.32 0.72598 100.32 100 100.73 0 33 20 2 0 0 0 0.7906 1 19658 19658 4.897 0.70751 1 3065200 + 42295 25213 28126 28143 41668 41668 0.14587682050796502 SLIKGNEYY 9 Unmodified _SLIKGNEYY_ 0 0 0 REV__tr|U7SM38|U7SM38_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02037PE=4SV=1 REV__tr|U7SM38|U7SM38_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02037PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7695922851562 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 115.18 1 115.18 114.68 115.68 0 0 0 0 0.23508 1 22666 22666 11.64 0 1 + 42296 24955 28127 28144 41669 41669 -2.2671392343909247E-05 SLIKHKIML 9 Unmodified _SLIKHKIML_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.848876953125 3 361.563334 1081.66817 NaN NaN NaN NaN NaN NaN NaN 71.991 1 68.681 68.181 69.181 -3.3107 0 0 0 0.19512 1 14026 14026 12.241 7.3436 1 42297 2799 28128 28145 41670 41670 0.1306041628999992 SLIKKIKDV 9 Unmodified _SLIKKIKDV_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2;ENST00000487720.1_1_7:26887667-26904048:-|nuORF;ENST00000497511.5_1_7:26786288-26904048:-|nuORF;ENST00000468712.5_1_7:26766479-26894483:-|nuORF ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2571411132812 2 522.344792 1042.67503 0.56146 0.00029328 -0.728 -0.00038027 -0.16654 -8.6989E-05 522.34432426649 47.269 0.56048 47.269 47.017 47.577 0 37 15 3 0 0 0 0.4799 1 8906 8906 42.835 24.462 1 3261300 42298 981 28129 28146 41671 41671 0.15540052442224805 SLIKKIKDV 9 Unmodified _SLIKKIKDV_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2;ENST00000487720.1_1_7:26887667-26904048:-|nuORF;ENST00000497511.5_1_7:26786288-26904048:-|nuORF;ENST00000468712.5_1_7:26766479-26894483:-|nuORF ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2571411132812 2 522.344792 1042.67503 -0.33822 -0.00017667 -0.15457 -8.0737E-05 -0.49279 -0.00025741 522.344676098219 49.859 0.62961 46.978 46.695 47.324 -2.8811 39 17 3 0 0 0 0.16962 1 9427 9427 41.347 23.904 1 4371900 42299 981 28129 28146 41672 41672 0.15540052442224805 SLIKKIKDV 9 Unmodified _SLIKKIKDV_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2;ENST00000487720.1_1_7:26887667-26904048:-|nuORF;ENST00000497511.5_1_7:26786288-26904048:-|nuORF;ENST00000468712.5_1_7:26766479-26894483:-|nuORF ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2657470703125 2 522.344792 1042.67503 -0.66036 -0.00034494 0.2451 0.00012803 -0.41526 -0.00021691 522.3448803473347 50.144 0.638 47.145 46.833 47.471 -2.999 41 18 3 0 0 0 0.20699 1 9173 9173 60.899 25.967 1 5366500 42300 981 28129 28146 41673 41673 0.15540052442224805 SLIKKIKDV 9 Unmodified _SLIKKIKDV_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2;ENST00000487720.1_1_7:26887667-26904048:-|nuORF;ENST00000497511.5_1_7:26786288-26904048:-|nuORF;ENST00000468712.5_1_7:26766479-26894483:-|nuORF ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2572631835938 2 522.344792 1042.67503 -0.019642 -1.026E-05 -0.30548 -0.00015957 -0.32513 -0.00016983 522.3445944824065 50.083 0.70602 47.076 46.67 47.376 -3.0068 43 20 3 0 0 0 0.20699 1 9205 9205 60.899 27.454 1 3837700 42301 981 28129 28146 41674 41674 0.15540052442224805 SLIPNLRNV 9 Unmodified _SLIPNLRNV_ 0 0 0 LDLR|p.V430A|1|0.3|ENSG00000130164|chr19:11113380-11113380|T/C|missense_variant;ENST00000560173.1_1_19:11221401-11224126:+|nuORF;LDLR|p.P649Qfs*16|1|0.33|ENSG00000130164|chr19:11120189-11120189|C/-|frameshift_variant;nc|ENSG00000130164|P01130-2|LDLR;nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR LDLR|p.V430A|1|0.3|ENSG00000130164|chr19:11113380-11113380|T/C|missense_variant LDLR|p.V430A|1|0.3|ENSG00000130164|chr19:11113380-11113380|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 513.248291015625 2 513.308741 1024.60293 -0.10679 -5.4818E-05 0.15623 8.0195E-05 0.049437 2.5377E-05 513.3086861852713 139.76 0.83173 135.12 134.79 135.62 -4.6439 44 23 2 0 0 0 0.27464 1 27652 27652 37.075 28.323 1 3520500 42302 3589 28130 28147 41675 41675 0.0916113808850696 SLIPNLRNV 9 Unmodified _SLIPNLRNV_ 0 0 0 LDLR|p.V430A|1|0.3|ENSG00000130164|chr19:11113380-11113380|T/C|missense_variant;ENST00000560173.1_1_19:11221401-11224126:+|nuORF;LDLR|p.P649Qfs*16|1|0.33|ENSG00000130164|chr19:11120189-11120189|C/-|frameshift_variant;nc|ENSG00000130164|P01130-2|LDLR;nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR LDLR|p.V430A|1|0.3|ENSG00000130164|chr19:11113380-11113380|T/C|missense_variant LDLR|p.V430A|1|0.3|ENSG00000130164|chr19:11113380-11113380|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 513.308741 1024.60293 -0.42749 -0.00021944 0.4896 0.00025132 0.062107 3.188E-05 513.3089895945516 140.29 0.86469 135.31 134.85 135.71 -4.9877 0.086084 0.00032784 NaN 37.075 40 24 2 NaN NaN NaN NaN 0 NaN NaN 0 3339800 42303 3589 28130 28147 0.0916113808850696 SLIPNLRNV 9 Unmodified _SLIPNLRNV_ 0 0 0 LDLR|p.V430A|1|0.3|ENSG00000130164|chr19:11113380-11113380|T/C|missense_variant;ENST00000560173.1_1_19:11221401-11224126:+|nuORF;LDLR|p.P649Qfs*16|1|0.33|ENSG00000130164|chr19:11120189-11120189|C/-|frameshift_variant;nc|ENSG00000130164|P01130-2|LDLR;nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR LDLR|p.V430A|1|0.3|ENSG00000130164|chr19:11113380-11113380|T/C|missense_variant LDLR|p.V430A|1|0.3|ENSG00000130164|chr19:11113380-11113380|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 513.308741 1024.60293 0.23619 0.00012124 -0.024108 -1.2375E-05 0.21209 0.00010887 513.3085664915848 140.08 0.91264 135.23 134.81 135.72 -4.8492 0.013257 -0.00019954 NaN 37.075 47 25 2 NaN NaN NaN NaN 0 NaN NaN 0 2037700 42304 3589 28130 28147 0.0916113808850696 SLIPRTRAG 9 Unmodified _SLIPRTRAG_ 0 0 0 ENST00000359114.8_1_22:38087588-38087750:+|nuORF ENST00000359114.8_1_22:38087588-38087750:+|nuORF ENST00000359114.8_1_22:38087588-38087750:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.8384704589844 3 324.197931 969.571963 -0.44991 -0.00014586 0.22467 7.2838E-05 -0.22524 -7.3024E-05 324.1980170212627 32.1 0.72684 32.1 31.809 32.536 0 68 20 5 0 0 0 0.63755 1 5913 5913 0 0 1 72954000 42305 8996 28131 28148 41676 41676 0.08595984774285625 SLIQRIPAP 9 Unmodified _SLIQRIPAP_ 0 0 0 REV__NLRP1|p.K583Rfs*14|2|0.29|ENSG00000091592|chr17:5558948-5558948|T/-|frameshift_variant REV__NLRP1|p.K583Rfs*14|2|0.29|ENSG00000091592|chr17:5558948-5558948|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.00592041015625 3 332.206315 993.597115 -0.3616 -0.00012012 1.051 0.00034916 0.68944 0.00022904 332.2065436275263 26.205 0.61552 26.205 25.95 26.566 0 34 17 3 0 0 0 0.8825 1 4547 4547 2.7352 0 1 1769900 + 42306 14575 28132 28149 41677 41677 0.1000603957684234 SLIRKTRTI 9 Unmodified _SLIRKTRTI_ 0 0 0 nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.778076171875 2 544.35094 1086.68733 0.25619 0.00013946 3.656 0.0019902 3.9122 0.0021296 544.855884614398 130.21 0.17722 125.44 125.32 125.5 -4.7725 5 4 2 0 0 0 0.84208 1 25045 25045 7.2892 1.0834 1 558920 42307 6775 28133 28150 41678 41678 0.1474508890528341 SLIRNLEQL 9 Unmodified _SLIRNLEQL_ 0 0 0 ENST00000601061.1_1_19:7710099-7712134:+|nuORF;ENST00000593854.5_1_19:7709481-7711320:+|nuORF;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2 ENST00000601061.1_1_19:7710099-7712134:+|nuORF ENST00000601061.1_1_19:7710099-7712134:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7818603515625 2 543.319306 1084.62406 0.28502 0.00015486 -0.19597 -0.00010648 0.08905 4.8382E-05 543.3188804783332 143.33 0.56075 138.68 138.37 138.93 -4.656 31 15 3 0 0 0 0.05838 1 28293 28293 67.838 27.888 1 5738300 42308 1548 28134 28151 41679 41679 0.08513103397376653 SLIRNLEQL 9 Unmodified _SLIRNLEQL_ 0 0 0 ENST00000601061.1_1_19:7710099-7712134:+|nuORF;ENST00000593854.5_1_19:7709481-7711320:+|nuORF;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2 ENST00000601061.1_1_19:7710099-7712134:+|nuORF ENST00000601061.1_1_19:7710099-7712134:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7896118164062 2 543.319306 1084.62406 0.11526 6.2625E-05 -0.1787 -9.7093E-05 -0.06344 -3.4468E-05 543.3188764666311 143.76 0.49283 138.72 138.47 138.96 -5.0432 25 13 2 0 0 0 0.036303 5 27718 27679;27718;27737;27740;27763 74.216 55.602 1 5256100 42309 1548 28134 28151 41680;41681;41682;41683;41684 41681 0.08513103397376653 SLIRNLEQL 9 Unmodified _SLIRNLEQL_ 0 0 0 ENST00000601061.1_1_19:7710099-7712134:+|nuORF;ENST00000593854.5_1_19:7709481-7711320:+|nuORF;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2 ENST00000601061.1_1_19:7710099-7712134:+|nuORF ENST00000601061.1_1_19:7710099-7712134:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7954711914062 2 543.319306 1084.62406 0.38045 0.00020671 -0.52664 -0.00028613 -0.14619 -7.943E-05 543.3188864033996 143.66 0.52847 138.76 138.47 139 -4.8982 27 14 2 0 0 0 0.015957 2 27693 27693;27768 96.367 21.438 1 4853200 42310 1548 28134 28151 41685;41686 41685 0.08513103397376653 SLISLLFY 8 Unmodified _SLISLLFY_ 0 0 0 REV__ENSG00000170920|ENST00000305444|OR7G3 REV__ENSG00000170920|ENST00000305444|OR7G3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7273864746094 2 478.278586 954.54262 NaN NaN NaN NaN NaN NaN NaN 78.591 1 78.591 78.091 79.091 0 0 0 0 0.21486 1 15295 15295 5.7604 0 1 + 42311 18191 28135 28152 41687 41687 0.06353027705438308 SLISSPTVI 9 Unmodified _SLISSPTVI_ 0 0 0 REV__OR2W3|p.L284Sfs*14|2|0.22|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant REV__OR2W3|p.L284Sfs*14|2|0.22|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2383117675781 2 458.771126 915.527698 0.25935 0.00011898 -0.049449 -2.2686E-05 0.2099 9.6296E-05 458.77104143409827 116.5 1.3173 111.91 111.36 112.68 -4.5815 113 37 5 0 0 0 0.091177 1 22299 22299 60.39 2.9182 1 65175000 + 42312 24406 28136 28153 41688 41688 0.06655535837421667 SLIVGGISNAI 11 Unmodified _SLIVGGISNAI_ 0 0 0 REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1 REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2796020507812 2 522.308406 1042.60226 -0.20767 -0.00010847 1.3849 0.00072333 1.1772 0.00061487 522.3092162668537 122.69 0.62825 117.96 117.74 118.37 -4.731 26 17 2 0 0 0 0.70375 1 23598 23598 11.495 1.4208 1 1454200 + 42313 25006 28137 28154 41689 41689 0.08266298648823067 SLIVKPARY 9 Unmodified _SLIVKPARY_ 0 0 0 REV__MAPK13|p.E192K|1|0.19|ENSG00000156711|chr6:36136734-36136734|G/A|missense_variant REV__MAPK13|p.E192K|1|0.19|ENSG00000156711|chr6:36136734-36136734|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.68115234375 2 523.821484 1045.62842 0.20869 0.00010932 -0.16419 -8.6004E-05 0.044503 2.3311E-05 524.3227926372109 128.52 0.13597 123.78 123.69 123.83 -4.7408 5 3 2 0 0 0 0.8319 1 24731 24731 7.9102 0 1 518320 + 42314 23834 28138 28155 41690 41690 0.1074261261094307 SLIWRADAD 9 Unmodified _SLIWRADAD_ 0 0 0 REV__SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant REV__SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6791381835938 2 523.766906 1045.51926 NaN NaN NaN NaN NaN NaN NaN 159.38 1 154.1 153.6 154.6 -5.2712 0 0 0 0.23508 1 30924 30924 10.074 0.6908 1 + 42315 17520 28139 28156 41691 41691 -0.0016801807919364364 SLKDLLAIS 9 Unmodified _SLKDLLAIS_ 0 0 0 REV__nc|ENSG00000225830|P0DP91|ERCC6 REV__nc|ENSG00000225830|P0DP91|ERCC6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7806701660156 2 480.292225 958.569897 0.060849 2.9225E-05 -0.021879 -1.0508E-05 0.03897 1.8717E-05 480.29218411659514 139.21 1.3347 134.57 134.01 135.35 -4.6439 130 37 5 0 0 0 0.48181 1 27583 27583 1.2148 0.83524 1 222490000 + 42316 24277 28140 28157 41692 41692 0.08895511245793841 SLKDYGLEY 9 Unmodified _SLKDYGLEY_ 0 0 0 tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1 tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1 tr|U7T5K4|U7T5K4_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00151PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7921752929688 2 544.268947 1086.52334 0.19581 0.00010657 0.36135 0.00019667 0.55716 0.00030325 544.2690661784927 89.706 0.8009 89.706 89.281 90.082 0 50 22 3 0 0 0 0.52242 1 17458 17458 22.736 0 1 9284200 42317 26468 28141 28158 41693 41693 -0.016459733761621465 SLKELDPN 8 Unmodified _SLKELDPN_ 0 0 0 PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant;PDZRN3|p.K1024Rfs*2|1|0.07|ENSG00000121440|chr3:73383495-73383495|T/-|frameshift_variant;ENSG00000121440|ENST00000263666|PDZRN3 PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.24139404296875 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 115.4 1 110.92 110.42 111.42 -4.4726 0 0 0 0.18898 1 22748 22748 28.487 1.6032 1 42318 12771 28142 28159 41694 41694 0.010254882809022092 SLKERITSF 9 Unmodified _SLKERITSF_ 0 0 0 REV__ENST00000548440.1_1_2:160178483-160189161:-|nuORF REV__ENST00000548440.1_1_2:160178483-160189161:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2601318359375 2 540.806031 1079.59751 0.29326 0.0001586 -3.0017 -0.0016233 -2.7084 -0.0014647 541.304786133709 125.43 0.17404 125.43 125.29 125.47 0 5 4 2 0 0 0 0.81703 1 24719 24719 6.2058 2.9245 1 1643300 + 42319 15739 28143 28160 41695 41695 0.06089414506027424 SLKFIFLI 8 Unmodified _SLKFIFLI_ 0 0 0 REV__ENST00000395788.3_1_6:31804929-31805136:+|nuORF REV__ENST00000395788.3_1_6:31804929-31805136:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2648620605469 2 490.812596 979.61064 0.30956 0.00015194 0.012276 6.0252E-06 0.32184 0.00015796 490.8125204250136 102.61 0.63724 98.592 98.32 98.957 -4.0212 42 17 3 0 0 0 0.97994 1 19687 19687 5.7604 0 1 3703600 + 42320 21266 28144 28161 41696 41696 0.12001897356083191 SLKHELVKK 9 Unmodified _SLKHELVKK_ 0 0 0 REV__ENSG00000266826|ENST00000583666|IGBP1C REV__ENSG00000266826|ENST00000583666|IGBP1C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2702026367188 2 541.340041 1080.66553 NaN NaN NaN NaN NaN NaN NaN 162.3 1 162.3 161.8 162.8 0 0 0 0 0.23508 1 32622 32622 6.7232 0.51738 1 + 42321 19904 28145 28162 41697 41697 0.1284228415670441 SLKHKVLKI 9 Unmodified _SLKHKVLKI_ 0 0 0 ENST00000488906.1_1_17:45236795-45237245:-|nuORF ENST00000488906.1_1_17:45236795-45237245:-|nuORF ENST00000488906.1_1_17:45236795-45237245:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2866821289062 2 533.360776 1064.707 NaN NaN NaN NaN NaN NaN NaN 157.52 1 157.52 157.02 158.02 0 0 0 0 0.23508 1 31618 31618 2.0598 0 1 42322 10491 28146 28163 41698 41698 0.17723464916025478 SLKIDKERY 9 Unmodified _SLKIDKERY_ 0 0 0 tr|U7SLA2|U7SLA2_FUSNULLPSF_NHT_00031familyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01947PE=3SV=1 tr|U7SLA2|U7SLA2_FUSNULLPSF_NHT_00031familyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01947PE=3SV=1 tr|U7SLA2|U7SLA2_FUSNULLPSF_NHT_00031familyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01947PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3275756835938 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 142.05 1 137.02 136.52 137.52 -5.0261 0 0 0 0.19656 1 27369 27369 0.073264 0 1 42323 25982 28147 28164 41699 41699 0.06533086051808823 SLKIKIKKE 9 Unmodified _SLKIKIKKE_ 0 0 0 ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1 ENST00000490265.5_1_X:13771424-13787224:+|nuORF ENST00000490265.5_1_X:13771424-13787224:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7887573242188 2 543.865892 1085.71723 NaN NaN NaN NaN NaN NaN NaN 162.66 1 157.47 156.97 157.97 -5.1878 0 0 0 0.23508 1 31596 31596 3.5965 0 1 42324 1211 28148 28165 41700 41700 0.1778002785060835 SLKIKKSKRR 10 Unmodified _SLKIKKSKRR_ 0 0 0 ENSG00000166068|ENST00000299084|SPRED1 ENSG00000166068|ENST00000299084|SPRED1 ENSG00000166068|ENST00000299084|SPRED1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7654418945312 2 622.419688 1242.82482 NaN NaN NaN NaN NaN NaN NaN 111.14 1 106.91 106.41 107.41 -4.2289 0 0 0 0.22588 1 21388 21388 3.9444 0 1 42325 5686 28149 28166 41701 41701 0.21312417504668701 SLKIKKSKRR 10 Unmodified _SLKIKKSKRR_ 0 0 0 ENSG00000166068|ENST00000299084|SPRED1 ENSG00000166068|ENST00000299084|SPRED1 ENSG00000166068|ENST00000299084|SPRED1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7540283203125 2 622.419688 1242.82482 NaN NaN NaN NaN NaN NaN NaN 111.23 1 107 106.5 107.5 -4.2289 0 0 0 0.22588 1 21407 21407 3.9444 0 1 42326 5686 28149 28166 41702 41702 0.21312417504668701 SLKKKKEKKK 10 Unmodified _SLKKKKEKKK_ 0 0 0 AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|8|2|sense AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|8|2|sense AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|8|2|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7818603515625 2 622.924272 1243.83399 NaN NaN NaN NaN NaN NaN NaN 162.52 1 157.73 157.23 158.23 -4.7898 0 0 0 0.22588 1 32341 32341 3.5965 0 1 42327 131 28150 28167 41703 41703 0.2218276607034113 SLKKKLFLT 9 Unmodified _SLKKKLFLT_ 0 0 0 ENST00000484669.6_1_1:6685268-6693134:+|nuORF;ENST00000487819.5_2_1:6688710-6693134:+|nuORF;nc|ENSG00000041988|Q8WTV1-3|THAP3;ENSG00000041988|ENST00000054650|THAP3 ENST00000484669.6_1_1:6685268-6693134:+|nuORF ENST00000484669.6_1_1:6685268-6693134:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 539.6464233398438 2 539.35516 1076.69577 0.25964 0.00014004 -1.4836 -0.00080021 -1.224 -0.00066017 539.8576517382661 141.06 0.13242 141.06 140.99 141.12 0 5 3 2 0 0 0 0.87974 1 28086 28086 0.45834 0 1 4190300 42328 1198 28151 28168 41704 41704 0.16048642821874637 SLKKPIIPKE 10 Unmodified _SLKKPIIPKE_ 0 0 0 ENSG00000079313|ENST00000170168|REXO1 ENSG00000079313|ENST00000170168|REXO1 ENSG00000079313|ENST00000170168|REXO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3389892578125 2 576.871174 1151.72779 0.30806 0.00017771 2.6418 0.001524 2.9499 0.0017017 576.8749520347784 144.24 0.17497 139.29 139.2 139.38 -4.9445 7 4 3 0 0 0 0.91149 1 27864 27864 1.4819 0 1 3606100 42329 1592 28152 28169 41705 41705 0.15800010505040518 SLKKRMEVPD 10 Unmodified _SLKKRMEVPD_ 0 0 0 nc|nan|Q49AR2-2|C5orf22;ENSG00000082213|ENST00000325366|C5orf22 nc|nan|Q49AR2-2|C5orf22 nc|nan|Q49AR2-2|C5orf22 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2752685546875 2 601.831723 1201.64889 0.97827 0.00058875 -0.50722 -0.00030526 0.47105 0.00028349 601.8312954362563 91.914 0.54398 87.989 87.688 88.232 -3.9251 25 15 2 0 0 0 0.87854 1 18025 18025 2.9952 2.9952 1 3150800 42330 1637 28153 28170 41706 41706 0.056134152084496236 SLKKVPVVPQ 10 Unmodified _SLKKVPVVPQ_ 0 0 0 ENSG00000282815|ENST00000695840|TEX13C ENSG00000282815|ENST00000695840|TEX13C ENSG00000282815|ENST00000695840|TEX13C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7742919921875 2 547.850242 1093.68593 0.12372 6.7779E-05 4.0427 0.0022148 4.1665 0.0022826 547.8513067280992 143.77 0.14075 138.71 138.6 138.74 -5.0537 5 3 2 0 0 0 0.90091 1 27724 27724 3.2813 0.97858 1 787780 42331 8050 28154 28171 41707 41707 0.14283454816495578 SLKKYADYES 10 Unmodified _SLKKYADYES_ 0 0 0 ENST00000506027.1_1_8:130742439-130742688:+|nuORF ENST00000506027.1_1_8:130742439-130742688:+|nuORF ENST00000506027.1_1_8:130742439-130742688:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.296630859375 2 602.298236 1202.58192 NaN NaN NaN NaN NaN NaN NaN 141.68 1 137.03 136.53 137.53 -4.6493 0 0 0 0.22588 1 27989 27989 8.7454 3.0136 1 42332 10676 28155 28172 41708 41708 -0.011269168016724507 SLKLVLLVL 9 Unmodified _SLKLVLLVL_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.2380676269531 3 333.238844 996.694704 NaN NaN NaN NaN NaN NaN NaN 68.827 1 65.291 64.791 65.791 -3.5362 0 0 0 0.19645 1 12946 12946 0.12781 0 1 42333 10984 28156 28173 41709 41709 0.19622428452976237 SLKLVLLVLLY 11 Unmodified _SLKLVLLVLLY_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2558898925781 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 73.382 1 73.382 72.882 73.882 0 0 0 0 0.23698 1 14241 14241 0.45452 0.29519 1 42334 10984 28157 28174 41710 41710 0.21658900267129866 SLKLVLLVLLY 11 Unmodified _SLKLVLLVLLY_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.243408203125 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 73.912 1 73.912 73.412 74.412 0 0 0 0 0.23698 1 14342 14342 0.45452 0.29519 1 42335 10984 28157 28174 41711 41711 0.21658900267129866 SLKLVLLVLLY 11 Unmodified _SLKLVLLVLLY_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2519836425781 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 95.691 1 95.691 95.191 96.191 0 0 0 0 0.23698 1 18745 18745 0.45452 0.29519 1 42336 10984 28157 28174 41712 41712 0.21658900267129866 SLKLVLLVLLY 11 Unmodified _SLKLVLLVLLY_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2400207519531 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 101.54 1 101.54 101.04 102.04 0 0 0 0 0.23698 1 19933 19933 0.45452 0.29519 1 42337 10984 28157 28174 41713 41713 0.21658900267129866 SLKLVLLVLLY 11 Unmodified _SLKLVLLVLLY_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.23779296875 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 89.328 1 85.535 85.035 86.035 -3.7926 0 0 0 0.23698 1 17480 17480 0.45452 0.29519 1 42338 10984 28157 28174 41714 41714 0.21658900267129866 SLKLVLLVLLY 11 Unmodified _SLKLVLLVLLY_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.250732421875 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 108.33 1 104.01 103.51 104.51 -4.32 0 0 0 0.23698 1 21344 21344 1.3296 0.63198 1 42339 10984 28157 28174 41715 41715 0.21658900267129866 SLKLVLLVLLY 11 Unmodified _SLKLVLLVLLY_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.254150390625 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 112 1 107.57 107.07 108.07 -4.4231 0 0 0 0.23698 1 22071 22071 1.3296 0.55311 1 42340 10984 28157 28174 41716 41716 0.21658900267129866 SLKLVLLVLLY 11 Unmodified _SLKLVLLVLLY_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25494384765625 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 64.229 1 60.814 60.314 61.314 -3.4158 0 0 0 0.23698 1 12014 12014 1.3296 0.55311 1 42341 10984 28157 28174 41717 41717 0.21658900267129866 SLKNRIESV 9 Unmodified _SLKNRIESV_ 0 0 0 nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant;ARHGAP11A|p.T646Lfs*6|1|0.08|ENSG00000198826|chr15:32636708-32636709|-/CTTTC|frameshift_variant;nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A;ENSG00000198826|ENST00000361627|ARHGAP11A nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6763305664062 2 523.303655 1044.59276 -0.62631 -0.00032775 0.33043 0.00017292 -0.29588 -0.00015484 523.3039112163686 45.156 0.39388 42.29 42.09 42.484 -2.8653 17 10 2 0 0 0 0.72134 1 8175 8175 27.223 7.8613 1 1231200 42342 202 28158 28175 41718 41718 0.07224530363282611 SLKNRIESV 9 Unmodified _SLKNRIESV_ 0 0 0 nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant;ARHGAP11A|p.T646Lfs*6|1|0.08|ENSG00000198826|chr15:32636708-32636709|-/CTTTC|frameshift_variant;nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A;ENSG00000198826|ENST00000361627|ARHGAP11A nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.303655 1044.59276 -0.20144 -0.00010542 0.018515 9.6892E-06 -0.18293 -9.5726E-05 523.303504334034 45.04 0.39566 42.249 42.059 42.455 -2.79 0.014597 8.2351E-05 NaN 27.223 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1094800 42343 202 28158 28175 0.07224530363282611 SLKPHSVPP 9 Unmodified _SLKPHSVPP_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant;MGA|p.E1249Rfs*42|1|0.17|ENSG00000174197|chr15:41729244-41729244|A/-|frameshift_variant;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant nc|ENSG00000174197|Q8IWI9-3|MGA;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7785949707031 2 481.276909 960.539266 0.028372 1.3655E-05 0.078599 3.7828E-05 0.10697 5.1483E-05 481.27695501245694 60.203 1.8683 57.27 56.469 58.337 -2.9333 76 53 2 0 0 0 0.5059 1 11573 11573 19.257 2.3147 1 1561600 42344 6335;12140 28159 28176 41719 41719 0.05741777651417124 SLKQVEGSFS 10 Unmodified _SLKQVEGSFS_ 0 0 0 REV__ENSG00000130711|ENST00000253008|PRDM12 REV__ENSG00000130711|ENST00000253008|PRDM12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2809448242188 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 37.854 1 35.459 34.959 35.959 -2.3951 0 0 0 0.22588 1 6719 6719 9.3831 0.035688 1 + 42345 16028 28160 28177 41720 41720 0.008088313724329055 SLKRSLRRKL 10 Unmodified _SLKRSLRRKL_ 0 0 0 REV__nc|ENSG00000112419|O75167-5|PHACTR2 REV__nc|ENSG00000112419|O75167-5|PHACTR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 628.7877197265625 2 628.917313 1255.82007 NaN NaN NaN NaN NaN NaN NaN 167.29 1 162.5 162 163 -4.7898 0 0 0 0.22588 1 33720 33720 1.6526 0 1 + 42346 15299 28161 28178 41721 41721 0.20239533361927897 SLKRSTKYTWK 11 Unmodified _SLKRSTKYTWK_ 0 0 0 REV__EFCAB8|p.T943Hfs*12|1|0.12|ENSG00000215529|chr20:32943665-32943666|-/C|frameshift_variant REV__EFCAB8|p.T943Hfs*12|1|0.12|ENSG00000215529|chr20:32943665-32943666|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 466.60101318359375 3 466.601504 1396.78268 NaN NaN NaN NaN NaN NaN NaN 140.68 1 135.81 135.31 136.31 -4.8678 0 0 0 0.23698 1 27128 27128 2.6312 1.3016 1 + 42347 13785 28162 28179 41722 41722 0.1001639730561692 SLKVILVF 8 Unmodified _SLKVILVF_ 0 0 0 ENST00000481194.1_1_7:45112212-45112383:+|nuORF ENST00000481194.1_1_7:45112212-45112383:+|nuORF ENST00000481194.1_1_7:45112212-45112383:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2486572265625 2 459.804771 917.59499 0.18049 8.2988E-05 0.45523 0.00020932 0.63571 0.0002923 459.8049067808774 65.35 0.49333 61.892 61.646 62.139 -3.4581 24 13 2 0 0 0 1.0249 1 12248 12248 5.7604 0 1 2689700 42348 10369 28163 28180 41723 41723 0.13289610839046873 SLKVIRNK 8 Unmodified _SLKVIRNK_ 0 0 0 tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1 tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1 tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7236328125 2 479.313826 956.613099 0.35303 0.00016921 2.8341 0.0013584 3.1872 0.0015277 479.313924599129 73.419 0.21777 69.825 69.723 69.941 -3.594 8 5 2 0 0 0 1.0254 1 13950 13950 2.3027 0 1 521590 42349 26488 28164 28181 41724 41724 0.13305745813750036 SLKWERDFSFG 11 Unmodified _SLKWERDFSFG_ 0 0 0 REV__RUSC2|p.Q227R|1|0.29|ENSG00000198853|chr9:35547201-35547201|A/G|missense_variant REV__RUSC2|p.Q227R|1|0.29|ENSG00000198853|chr9:35547201-35547201|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2287902832031 3 457.894577 1370.6619 0.15772 7.222E-05 -0.0025776 -1.1803E-06 0.15514 7.1039E-05 458.2288940044456 103.79 0.72633 99.445 99.071 99.798 -4.346 51 20 3 0 0 0 0.59836 1 19828 19828 0.172 0.16604 1 3320800 + 42350 24587 28165 28182 41725 41725 -0.008604304078289715 SLKWERDFSFG 11 Unmodified _SLKWERDFSFG_ 0 0 0 REV__RUSC2|p.Q227R|1|0.29|ENSG00000198853|chr9:35547201-35547201|A/G|missense_variant REV__RUSC2|p.Q227R|1|0.29|ENSG00000198853|chr9:35547201-35547201|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2291259765625 3 457.894577 1370.6619 0.61925 0.00028355 -0.48328 -0.00022129 0.13597 6.2261E-05 457.89432437824604 103.5 0.77077 99.447 99.031 99.802 -4.0543 52 21 3 0 0 0 0.65903 1 19872 19872 0.026206 0 1 2927000 + 42351 24587 28165 28182 41726 41726 -0.008604304078289715 SLKWTGSH 8 Unmodified _SLKWTGSH_ 0 0 0 REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2377624511719 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 103.31 1 99.288 98.788 99.788 -4.0212 0 0 0 0.21486 1 19864 19864 8.5933 0 1 + 42352 17100 28166 28183 41727 41727 0.0003634506618936939 SLLAGCHDGG 10 Unmodified _SLLAGCHDGG_ 0 0 0 REV__ENST00000491277.1_1_1:214706191-214706551:-|nuORF REV__ENST00000491277.1_1_1:214706191-214706551:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25787353515625 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 80.067 1 80.067 79.567 80.567 0 0 0 0 0.22588 1 15586 15586 10.074 0.72649 1 + 42353 22314 28167 28184 41728 41728 -0.059801954278327685 SLLAGYCPTY 10 Unmodified _SLLAGYCPTY_ 0 0 0 nc|ENSG00000052795|Q9P278-2|FNIP2;ENSG00000052795|ENST00000264433|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7713623046875 2 544.260068 1086.50558 NaN NaN NaN NaN NaN NaN NaN 59.315 1 56.001 55.501 56.501 -3.3139 0 0 0 0.22576 1 11028 11028 14.838 1.7958 1 42354 12217 28168 28185 41729 41729 -0.034210119026511165 SLLASQLRDKE 11 Unmodified _SLLASQLRDKE_ 0 0 0 ENST00000465252.5_1_17:74079731-74080394:-|nuORF ENST00000465252.5_1_17:74079731-74080394:-|nuORF ENST00000465252.5_1_17:74079731-74080394:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7620849609375 2 630.351334 1258.68811 0.41274 0.00026017 0.036939 2.3285E-05 0.44967 0.00028345 630.3512248266684 127.86 0.66022 123.06 122.73 123.4 -4.7958 41 18 3 0 0 0 0.35709 1 24560 24560 49.554 19.714 1 5107700 42355 10118 28169 28186 41730 41730 0.06911838763676315 SLLASQLRDKE 11 Unmodified _SLLASQLRDKE_ 0 0 0 ENST00000465252.5_1_17:74079731-74080394:-|nuORF ENST00000465252.5_1_17:74079731-74080394:-|nuORF ENST00000465252.5_1_17:74079731-74080394:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.765869140625 2 630.351334 1258.68811 0.3904 0.00024609 0.1223 7.7089E-05 0.51269 0.00032318 630.3513659311577 127.9 0.63093 123.2 122.82 123.45 -4.6998 37 17 3 0 0 0 0.47224 1 24582 24582 34.932 4.2286 1 4084400 42356 10118 28169 28186 41731 41731 0.06911838763676315 SLLASQLRDKE 11 Unmodified _SLLASQLRDKE_ 0 0 0 ENST00000465252.5_1_17:74079731-74080394:-|nuORF ENST00000465252.5_1_17:74079731-74080394:-|nuORF ENST00000465252.5_1_17:74079731-74080394:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 630.351334 1258.68811 1.0226 0.00064459 -0.4989 -0.00031448 0.52369 0.00033011 630.3511277654233 127.54 0.55867 122.93 122.64 123.2 -4.6172 -0.13483 -0.00042115 NaN 49.554 39 15 4 NaN NaN NaN NaN 0 NaN NaN 0 6282900 42357 10118 28169 28186 0.06911838763676315 SLLATAILGA 10 Unmodified _SLLATAILGA_ 0 0 0 TMEM168|p.T574Nfs*5|1|0.09|ENSG00000146802|chr7:112767570-112767571|-/T|frameshift_variant;ENSG00000146802|ENST00000312814|TMEM168 TMEM168|p.T574Nfs*5|1|0.09|ENSG00000146802|chr7:112767570-112767571|-/T|frameshift_variant TMEM168|p.T574Nfs*5|1|0.09|ENSG00000146802|chr7:112767570-112767571|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25909423828125 2 465.286943 928.559333 0.13576 6.3168E-05 0.0040645 1.8912E-06 0.13983 6.5059E-05 465.2868437709534 162.53 0.76349 162.53 162.1 162.86 0 64 21 4 0 0 0 0.00012457 1 32685 32685 128.37 6.8313 1 131510000 42358 4671 28170 28187 41732 41732 0.09219528591370363 SLLATAILGA 10 Unmodified _SLLATAILGA_ 0 0 0 TMEM168|p.T574Nfs*5|1|0.09|ENSG00000146802|chr7:112767570-112767571|-/T|frameshift_variant;ENSG00000146802|ENST00000312814|TMEM168 TMEM168|p.T574Nfs*5|1|0.09|ENSG00000146802|chr7:112767570-112767571|-/T|frameshift_variant TMEM168|p.T574Nfs*5|1|0.09|ENSG00000146802|chr7:112767570-112767571|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2463073730469 2 465.286943 928.559333 0.15365 7.1492E-05 -0.026355 -1.2263E-05 0.1273 5.923E-05 465.2868948220834 165.35 0.38005 160.37 160.21 160.59 -4.9811 31 10 4 0 0 0 5.9574E-07 1 32356 32356 128.37 0 1 197060000 42359 4671 28170 28187 41733 41733 0.09219528591370363 SLLAWNYI 8 Unmodified _SLLAWNYI_ 0 0 0 ENST00000325222.8_1_7:148451159-148451216:+|nuORF ENST00000325222.8_1_7:148451159-148451216:+|nuORF ENST00000325222.8_1_7:148451159-148451216:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.264404296875 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 98.546 1 98.546 98.046 99.046 0 0 0 0 0.19342 1 19317 19317 26.884 0.54238 1 42360 8739 28171 28188 41734 41734 0.02734972902840127 SLLAWNYI 8 Unmodified _SLLAWNYI_ 0 0 0 ENST00000325222.8_1_7:148451159-148451216:+|nuORF ENST00000325222.8_1_7:148451159-148451216:+|nuORF ENST00000325222.8_1_7:148451159-148451216:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2552185058594 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 98.738 1 98.738 98.238 99.238 0 0 0 0 0.19342 1 19356 19356 26.884 0.54238 1 42361 8739 28171 28188 41735 41735 0.02734972902840127 SLLCIRQLT 9 Unmodified _SLLCIRQLT_ 0 0 0 REV__ENST00000382952.7_2_4:1205601-1205772:-|nuORF REV__ENST00000382952.7_2_4:1205601-1205772:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6943969726562 2 523.804977 1045.5954 NaN NaN NaN NaN NaN NaN NaN 162.34 1 157.55 157.05 158.05 -4.7898 0 0 0 0.23277 1 32302 32302 13.906 0 1 + 42362 21182 28172 28189 41736 41736 0.07442662496555386 SLLDGWQP 8 Unmodified _SLLDGWQP_ 0 0 0 REV__ENST00000492173.1_1_1:10718563-10720675:-|nuORF REV__ENST00000492173.1_1_1:10718563-10720675:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2320556640625 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 130.87 1 130.87 130.37 131.37 0 0 0 0 0.21486 1 25873 25873 8.5933 0 1 + 42363 22331 28173 28190 41737 41737 -0.01086477027968158 SLLDHMQAM 9 Unmodified _SLLDHMQAM_ 0 0 0 ENSG00000126216|ENST00000261965|TUBGCP3;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;TUBGCP3|p.K552N|1|0.3|ENSG00000126216|chr13:112522409-112522409|C/G|missense_variant ENSG00000126216|ENST00000261965|TUBGCP3 ENSG00000126216|ENST00000261965|TUBGCP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 349.16455078125 3 349.165022 1044.47324 NaN NaN NaN NaN NaN NaN NaN 65.868 1 62.821 62.321 63.321 -3.047 0 0 0 0.23508 1 12756 12756 0.96228 0.18574 1 42364 3418 28174 28191 41738 41738 -0.0472212257730007 SLLDKIIGA 9 Unmodified _SLLDKIIGA_ 0 0 0 nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1 nc|ENSG00000177469|Q6NZI2-2|CAVIN1 nc|ENSG00000177469|Q6NZI2-2|CAVIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.250244140625 2 465.286943 928.559333 0.13576 6.3168E-05 0.0040645 1.8912E-06 0.13983 6.5059E-05 465.2868437709534 162.53 0.76349 162.53 162.1 162.86 0 64 21 4 0 0 0 0.058954 2 32682 32682;32758 67.838 48.447 1 131510000 42365 6514 28175 28192 41739;41740 41739 0.09219528591370363 SLLDLGSKM 9 Oxidation (M) _SLLDLGSKM(Oxidation (M))_ SLLDLGSKM(1) SLLDLGSKM(44) 0 0 1 ENSG00000125285|ENST00000376945|SOX21 ENSG00000125285|ENST00000376945|SOX21 ENSG00000125285|ENST00000376945|SOX21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2605895996094 2 490.260068 978.505582 NaN NaN NaN NaN NaN NaN NaN 74.741 1 71.147 70.647 71.647 -3.594 0 0 0 0.055797 1 14200 14200 43.982 25.609 1 42366 3347 28176 28193 41741 41741 56 0.015469880973796535 SLLDNMIGV 9 Unmodified _SLLDNMIGV_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25469970703125 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 168.52 1 168.52 168.02 169.02 0 0 0 0 0.11195 1 34520 34520 36.127 5.4905 1 42367 3536 28177 28194 41742 41742 0.013190054429401243 SLLDNMIGV 9 Unmodified _SLLDNMIGV_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2532958984375 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 169.83 1 164.9 164.4 165.4 -4.9295 0 0 0 0.00092106 1 33553 33553 78.149 32.128 1 42368 3536 28177 28194 41743 41743 0.013190054429401243 SLLDNMIGV 9 Unmodified _SLLDNMIGV_ 0 0 0 MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25482177734375 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 169.79 1 164.92 164.42 165.42 -4.873 0 0 0 0.04451 1 33560 33560 54.774 20.671 1 42369 3536 28177 28194 41744 41744 0.013190054429401243 SLLDSCTKL 9 Unmodified _SLLDSCTKL_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2605895996094 2 490.260068 978.505582 NaN NaN NaN NaN NaN NaN NaN 74.761 1 71.167 70.667 71.667 -3.594 0 0 0 0.20294 1 14204 14204 22.736 3.3743 1 42370 437 28178 28195 41745 41745 0.015469880973569161 SLLEAAEDL 9 Unmodified _SLLEAAEDL_ 0 0 0 ENSG00000064687|ENST00000263094|ABCA7;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;ABCA7|p.L827Sfs*28|1|0.29|ENSG00000064687|chr19:1049359-1049359|G/-|frameshift_variant ENSG00000064687|ENST00000263094|ABCA7 ENSG00000064687|ENST00000263094|ABCA7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2492980957031 2 480.747847 959.481142 -0.26657 -0.00012815 0.18914 9.093E-05 -0.077422 -3.7221E-05 480.7478822860588 111.26 0.75894 106.84 106.48 107.23 -4.4231 52 21 4 0 0 0 0.19983 1 21979 21979 2.6312 0 1 6300800 42371 1341 28179 28196 41746 41746 -0.00021948784524283838 SLLEELVL 8 Unmodified _SLLEELVL_ 0 0 0 nc|ENSG00000132259|Q8IV77-2|CNGA4;ENSG00000132259|ENST00000379936|CNGA4 nc|ENSG00000132259|Q8IV77-2|CNGA4 nc|ENSG00000132259|Q8IV77-2|CNGA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2385559082031 2 458.273501 914.532449 NaN NaN NaN NaN NaN NaN NaN 115.96 1 111.61 111.11 112.11 -4.3585 0 0 0 0.20568 1 22325 22325 20.871 0 1 42372 3712 28180 28197 41747 41747 0.07176419980191895 SLLEKSLGL 9 Unmodified _SLLEKSLGL_ 0 0 0 nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23114013671875 2 480.292225 958.569897 -0.026078 -1.2525E-05 0.17757 8.5284E-05 0.15149 7.2758E-05 480.2922482041259 135.01 1.1477 135.01 134.49 135.64 0 102 32 4 0 0 0 0.0048521 5 26707 26658;26661;26707;26762;26821 114.19 17.902 1 153880000 42373 3334 28181 28198 41748;41749;41750;41751;41752 41750 0.08895511245816579 SLLEKSLGL 9 Unmodified _SLLEKSLGL_ 0 0 0 nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7658386230469 2 480.292225 958.569897 0.060849 2.9225E-05 -0.021879 -1.0508E-05 0.03897 1.8717E-05 480.29218411659514 139.21 1.3347 134.57 134.01 135.35 -4.6439 130 37 5 0 0 0 0.031786 3 27526 27459;27477;27526 81.552 30.137 1 222490000 42374 3334 28181 28198 41753;41754;41755 41755 0.08895511245816579 SLLEKSLGL 9 Unmodified _SLLEKSLGL_ 0 0 0 nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.254150390625 2 480.292225 958.569897 0.09427 4.5277E-05 -0.016413 -7.8831E-06 0.077856 3.7394E-05 480.29215779299295 139.62 1.1845 134.67 134.17 135.36 -4.952 120 33 5 0 0 0 0.007198 3 26900 26817;26900;26994 110.55 41.19 1 163180000 42375 3334 28181 28198 41756;41757;41758 41757 0.08895511245816579 SLLEKSLGL 9 Unmodified _SLLEKSLGL_ 0 0 0 nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2547912597656 2 480.292225 958.569897 0.21352 0.00010255 -0.15568 -7.4774E-05 0.057836 2.7778E-05 480.2921025244615 139.56 1.5403 134.71 134.18 135.72 -4.8492 135 43 5 0 0 0 0.0088712 1 26915 26915 106.94 10.829 1 156150000 42376 3334 28181 28198 41759 41759 0.08895511245816579 SLLESNKDLLL 11 Unmodified _SLLESNKDLLL_ 0 0 0 ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;ENST00000535768.1_1_11:62651934-62652955:+|nuORF;ENST00000538682.5_1_11:62651934-62653989:+|nuORF;ENST00000457660.6_1_11:62649366-62653989:+|nuORF ENSG00000168003|ENST00000338663|SLC3A2 ENSG00000168003|ENST00000338663|SLC3A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.769775390625 2 622.85846 1243.70237 1.1304 0.00070408 -0.26765 -0.00016671 0.86276 0.00053738 622.8582101560503 157.99 0.60399 153.2 152.84 153.44 -4.7929 22 16 2 0 0 0 0.2642 1 31381 31381 40.239 28.064 1 2260300 42377 5866 28182 28199 41760 41760 0.09026491191957575 SLLESNKDLLL 11 Unmodified _SLLESNKDLLL_ 0 0 0 ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;ENST00000535768.1_1_11:62651934-62652955:+|nuORF;ENST00000538682.5_1_11:62651934-62653989:+|nuORF;ENST00000457660.6_1_11:62649366-62653989:+|nuORF ENSG00000168003|ENST00000338663|SLC3A2 ENSG00000168003|ENST00000338663|SLC3A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7777099609375 2 622.85846 1243.70237 0.4116 0.00025637 0.068047 4.2384E-05 0.47965 0.00029875 623.3597753792909 158.67 0.74232 153.39 153.09 153.83 -5.2748 26 20 2 0 0 0 0.3625 1 30805 30805 47.732 3.7501 1 3277400 42378 5866 28182 28199 41761 41761 0.09026491191957575 SLLESNKDLLL 11 Unmodified _SLLESNKDLLL_ 0 0 0 ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;ENST00000535768.1_1_11:62651934-62652955:+|nuORF;ENST00000538682.5_1_11:62651934-62653989:+|nuORF;ENST00000457660.6_1_11:62649366-62653989:+|nuORF ENSG00000168003|ENST00000338663|SLC3A2 ENSG00000168003|ENST00000338663|SLC3A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7760009765625 2 622.85846 1243.70237 0.62912 0.00039185 -0.47471 -0.00029568 0.15441 9.6176E-05 622.8583582602453 158.66 0.54416 153.39 153.11 153.66 -5.2712 23 14 2 0 0 0 0.47074 1 30759 30759 39.213 1.239 1 1993500 42379 5866 28182 28199 41762 41762 0.09026491191957575 SLLESNTPP 9 Unmodified _SLLESNTPP_ 0 0 0 REV__DNAJC6|p.K798Rfs*6|1|0.2|ENSG00000116675|chr1:65408709-65408709|A/-|frameshift_variant REV__DNAJC6|p.K798Rfs*6|1|0.2|ENSG00000116675|chr1:65408709-65408709|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73052978515625 2 479.248015 956.481476 -0.053262 -2.5526E-05 -0.007001 -3.3552E-06 -0.060263 -2.8881E-05 479.2479551794184 41.772 1.4718 39.121 38.272 39.744 -2.651 74 41 2 0 0 0 0.11171 1 7623 7623 68.081 15.812 1 11571000 + 42380 13729 28183 28200 41763 41763 0.001494709353323742 SLLGAGAM 8 Unmodified _SLLGAGAM_ 0 0 0 ENST00000575919.1_1_17:4936254-4936696:-|nuORF;ENST00000573674.1_1_17:4936254-4937771:-|nuORF;ENSG00000132517|ENST00000254853|SLC52A1 ENST00000575919.1_1_17:4936254-4936696:-|nuORF ENST00000575919.1_1_17:4936254-4936696:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2062072753906 2 360.191457 718.368361 0.080371 2.8949E-05 -3.1611 -0.0011386 -3.0807 -0.0011096 360.19115419817985 37.742 0.4486 35.394 35.202 35.651 -2.3479 19 12 3 0 0 0 1.0095 1 6701 6701 2.5775 0 1 641270 42381 3738 28184 28201 41764 41764 -0.002088759915409355 SLLGPEHPL 9 Unmodified _SLLGPEHPL_ 0 0 0 ENSG00000184083|ENST00000375180|FAM120C;FAM120A|p.V551Sfs*6|1|0.21|ENSG00000048828|chr9:93529491-93529491|C/-|frameshift_variant;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7701721191406 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 149.37 1 144.25 143.75 144.75 -5.1204 0 0 0 0.12288 1 28942 28942 34.102 3.8776 1 42382 6889 28185 28202 41765 41765 0.04098071414523474 SLLGTENASV 10 Unmodified _SLLGTENASV_ 0 0 0 ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000102804|Q15714-2|TSC22D1 ENST00000487881.2_1_13:45010128-45010713:-|nuORF ENST00000487881.2_1_13:45010128-45010713:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 990.4087524414062 1 990.510216 989.50294 0.38788 0.0003842 -0.21177 -0.00020976 0.17611 0.00017444 990.5099590921772 97.452 0.44368 93.217 92.949 93.392 -4.2348 20 12 2 0 0 0 5.9283E-11 1 18637 18637 154.75 54.997 1 2248300 42383 10478 28186 28203 41766 41766 0.007768559640453532 SLLGTENASV 10 Unmodified _SLLGTENASV_ 0 0 0 ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000102804|Q15714-2|TSC22D1 ENST00000487881.2_1_13:45010128-45010713:-|nuORF ENST00000487881.2_1_13:45010128-45010713:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 495.2564697265625 2 495.758746 989.50294 0.1041 5.1608E-05 0.26501 0.00013138 0.36911 0.00018299 495.7588339525861 97.409 0.92587 93.175 92.746 93.672 -4.2348 74 26 4 0 0 0 0.98004 1 18562 18562 34.967 30.309 1 28015000 42384 10478 28186 28203 41767 41767 0.007768559640453532 SLLGTENASV 10 Unmodified _SLLGTENASV_ 0 0 0 ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000102804|Q15714-2|TSC22D1 ENST00000487881.2_1_13:45010128-45010713:-|nuORF ENST00000487881.2_1_13:45010128-45010713:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 990.510216 989.50294 0.30554 0.00030264 -0.52273 -0.00051777 -0.21719 -0.00021513 990.510157988537 93.126 0.43931 93.126 92.886 93.326 0 -0.037403 -0.0005388 NaN 154.75 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1750000 42385 10478 28186 28203 0.007768559640453532 SLLGTENASV 10 Unmodified _SLLGTENASV_ 0 0 0 ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000102804|Q15714-2|TSC22D1 ENST00000487881.2_1_13:45010128-45010713:-|nuORF ENST00000487881.2_1_13:45010128-45010713:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 495.758746 989.50294 -0.034176 -1.6943E-05 0.41228 0.00020439 0.3781 0.00018745 495.75882150309565 93.05 0.89969 93.05 92.678 93.578 0 -0.0838 6.9905E-05 NaN 34.967 65 25 4 NaN NaN NaN NaN 0 NaN NaN 0 16663000 42386 10478 28186 28203 0.007768559640453532 SLLGTENASV 10 Unmodified _SLLGTENASV_ 0 0 0 ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000102804|Q15714-2|TSC22D1 ENST00000487881.2_1_13:45010128-45010713:-|nuORF ENST00000487881.2_1_13:45010128-45010713:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 990.510216 989.50294 -0.015207 -1.5063E-05 0.32447 0.00032139 0.30926 0.00030633 990.5104966948563 97.197 0.55463 93.099 92.769 93.324 -4.0978 -0.063895 0.00030036 NaN 154.75 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3283800 42387 10478 28186 28203 0.007768559640453532 SLLGTENASV 10 Unmodified _SLLGTENASV_ 0 0 0 ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000102804|Q15714-2|TSC22D1 ENST00000487881.2_1_13:45010128-45010713:-|nuORF ENST00000487881.2_1_13:45010128-45010713:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 495.758746 989.50294 0.090444 4.4838E-05 0.13429 6.6573E-05 0.22473 0.00011141 495.7587716076529 97.157 0.79504 93.059 92.669 93.464 -4.0978 -0.074467 -0.00020573 NaN 34.967 72 22 4 NaN NaN NaN NaN 0 NaN NaN 0 32903000 42388 10478 28186 28203 0.007768559640453532 SLLGTENASV 10 Unmodified _SLLGTENASV_ 0 0 0 ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000102804|Q15714-2|TSC22D1 ENST00000487881.2_1_13:45010128-45010713:-|nuORF ENST00000487881.2_1_13:45010128-45010713:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 990.510216 989.50294 0.10314 0.00010216 0.2035 0.00020157 0.30664 0.00030373 990.510230419895 97.129 0.47925 93.21 92.953 93.433 -3.9194 0.046867 0.00018053 NaN 154.75 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 4179500 42389 10478 28186 28203 0.007768559640453532 SLLGTENASV 10 Unmodified _SLLGTENASV_ 0 0 0 ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000102804|Q15714-2|TSC22D1 ENST00000487881.2_1_13:45010128-45010713:-|nuORF ENST00000487881.2_1_13:45010128-45010713:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 495.758746 989.50294 -0.20635 -0.0001023 0.54264 0.00026902 0.33629 0.00016672 495.75897453232807 97.17 1.0381 93.251 92.818 93.856 -3.9194 0.11727 0.00019916 NaN 34.967 72 29 4 NaN NaN NaN NaN 0 NaN NaN 0 30060000 42390 10478 28186 28203 0.007768559640453532 SLLGWTMEE 9 Unmodified _SLLGWTMEE_ 0 0 0 ENST00000499178.2_1_4:100010392-100023551:+|nuORF ENST00000499178.2_1_4:100010392-100023551:+|nuORF ENST00000499178.2_1_4:100010392-100023551:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2858276367188 2 533.2497 1064.48485 NaN NaN NaN NaN NaN NaN NaN 152.21 1 147.03 146.53 147.53 -5.1759 0 0 0 0.23508 1 29499 29499 7.2892 1.5288 1 42391 10612 28187 28204 41768 41768 -0.04481602282316999 SLLGYGFY 8 Unmodified _SLLGYGFY_ 0 0 0 nc|ENSG00000100422|Q8TCT0-2|CERK;ENSG00000100422|ENST00000216264|CERK nc|ENSG00000100422|Q8TCT0-2|CERK nc|ENSG00000100422|Q8TCT0-2|CERK MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2334289550781 2 460.231636 918.448719 NaN NaN NaN NaN NaN NaN NaN 134.6 1 129.73 129.23 130.23 -4.8726 0 0 0 0.21323 1 25856 25856 14.582 0 1 42392 1976 28188 28205 41769 41769 -0.013766913968538574 SLLHSNLRF 9 Unmodified _SLLHSNLRF_ 0 0 0 REV__ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant REV__ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7943725585938 2 543.806365 1085.59818 NaN NaN NaN NaN NaN NaN NaN 135.1 1 135.1 134.6 135.6 0 0 0 0 0.23277 1 26755 26755 13.906 0.39817 1 + 42393 17523 28189 28206 41770 41770 0.05880253945747427 SLLHTLDIWY 10 Unmodified _SLLHTLDIWY_ 0 0 0 ENST00000436950.5_1_2:64455600-64456705:+|nuORF ENST00000436950.5_1_2:64455600-64456705:+|nuORF ENST00000436950.5_1_2:64455600-64456705:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7493286132812 2 630.834788 1259.65502 NaN NaN NaN NaN NaN NaN NaN 77.664 1 77.664 77.164 78.164 0 0 0 0 0.22588 1 15105 15105 7.2892 1.5574 1 42394 9846 28190 28207 41771 41771 0.03558256711630747 SLLKETAMP 9 Unmodified _SLLKETAMP_ 0 0 0 REV__ENSG00000121892|ENST00000303538|PDS5A REV__ENSG00000121892|ENST00000303538|PDS5A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 495.2711181640625 2 495.270435 988.526318 NaN NaN NaN NaN NaN NaN NaN 131.92 1 127.28 126.78 127.78 -4.6399 0 0 0 0.18966 1 26000 26000 1.6919 0.47705 1 + 42395 15668 28191 28208 41772 41772 0.03159578477016112 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2559509277344 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 24.885 1 24.885 24.385 25.385 0 0 0 0 0.22588 1 4298 4298 0.13989 0 1 42396 5434 28192 28209 41773 41773 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2436828613281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 142.52 1 142.52 142.02 143.02 0 0 0 0 2.8426 1 28414 28414 0.13989 0.13933 1 42397 5434 28192 28209 41774 41774 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24578857421875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 143.44 1 143.44 142.94 143.94 0 0 0 0 2.8426 1 28621 28621 0.13989 0.12663 1 42398 5434 28192 28209 41775 41775 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2443542480469 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 99.398 1 95.265 94.765 95.765 -4.1326 0 0 0 2.8426 1 19525 19525 0.13989 0 1 42399 5434 28192 28209 41776 41776 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.250732421875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 108.32 1 104 103.5 104.5 -4.32 0 0 0 2.8426 1 21341 21341 0 0 1 42400 5434 28192 28209 41777 41777 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2411804199219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 134.24 1 129.61 129.11 130.11 -4.6399 0 0 0 0.22588 1 26471 26471 0.13989 0 1 42401 5434 28192 28209 41778 41778 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.251708984375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 139.71 1 135.07 134.57 135.57 -4.6439 0 0 0 2.8426 1 27582 27582 0.13989 0.04505 1 42402 5434 28192 28209 41779 41779 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2430419921875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 139.54 1 134.59 134.09 135.09 -4.952 0 0 0 2.8426 1 26843 26843 0.13989 0.04505 1 42403 5434 28192 28209 41780 41780 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2514953613281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 140.49 1 135.5 135 136 -4.9877 0 0 0 2.8426 1 27041 27041 0.13989 0.13989 1 42404 5434 28192 28209 41781 41781 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.251953125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 150.62 1 145.42 144.92 145.92 -5.1994 0 0 0 2.8426 1 29187 29187 0.13989 0.13989 1 42405 5434 28192 28209 41782 41782 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2519226074219 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 156.15 1 150.87 150.37 151.37 -5.2854 0 0 0 2.8426 1 30291 30291 0.13989 0.13989 1 42406 5434 28192 28209 41783 41783 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2441711425781 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 21.928 1 20.207 19.707 20.707 -1.7211 0 0 0 2.8426 1 3457 3457 0.043787 0 1 42407 5434 28192 28209 41784 41784 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.246826171875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 49.682 1 46.676 46.176 47.176 -3.0068 0 0 0 2.8426 1 9115 9115 0.13989 0.096105 1 42408 5434 28192 28209 41785 41785 0.21390489652844735 SLLKKRIRFL 10 Unmodified _SLLKKRIRFL_ 0 0 0 ENSG00000163512|ENST00000479665|AZI2;AZI2|p.R228Pfs*7|1|0.03|ENSG00000163512|chr3:28326916-28326917|-/GCTTTGG|frameshift_variant;ENST00000463512.5_1_3:28368296-28390095:-|nuORF;nc|ENSG00000163512|Q9H6S1-3|AZI2;nc|ENSG00000163512|Q9H6S1-5|AZI2;nc|ENSG00000163512|Q9H6S1-4|AZI2 ENSG00000163512|ENST00000479665|AZI2 ENSG00000163512|ENST00000479665|AZI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2518005371094 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 151.88 1 146.7 146.2 147.2 -5.1759 0 0 0 2.8426 1 29433 29433 0.13989 0.04505 1 42409 5434 28192 28209 41786 41786 0.21390489652844735 SLLLHKRTAI 10 Unmodified _SLLLHKRTAI_ 0 0 0 ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;TPCN1|p.L349Sfs*26|1|0.08|ENSG00000186815|chr12:113277020-113277020|G/-|frameshift_variant ENST00000428632.7_1_12:113682520-113726187:+|nuORF ENST00000428632.7_1_12:113682520-113726187:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3231201171875 2 576.36659 1150.71863 NaN NaN NaN NaN NaN NaN NaN 163.53 1 158.47 157.97 158.97 -5.0648 0 0 0 0.22588 1 31824 31824 5.7319 0 1 42410 9755 28193 28210 41787 41787 0.14929661939368088 SLLLHLLKSQ 10 Unmodified _SLLLHLLKSQ_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3348999023438 2 576.360973 1150.70739 NaN NaN NaN NaN NaN NaN NaN 155.97 1 155.97 155.47 156.47 0 0 0 0 0.22588 1 31275 31275 6.2058 0 1 42411 6679 28194 28211 41788 41788 0.13806839845233299 SLLLKKLVLP 10 Unmodified _SLLLKKLVLP_ 0 0 0 REV__ENSG00000167077|ENST00000401548|MEI1 REV__ENSG00000167077|ENST00000401548|MEI1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 562.375 2 562.394285 1122.77402 NaN NaN NaN NaN NaN NaN NaN 164.37 1 164.37 163.87 164.87 0 0 0 0 2.8426 1 33233 33233 0.13989 0 1 + 42412 17898 28195 28212 41789 41789 0.2175407540710239 SLLLLPLLLV 10 Unmodified _SLLLLPLLLV_ 0 0 0 IL27|p.A139Pfs*2|1|0.32|ENSG00000197272|chr16:28502023-28502023|C/-|frameshift_variant;ENSG00000197272|ENST00000356897|IL27 IL27|p.A139Pfs*2|1|0.32|ENSG00000197272|chr16:28502023-28502023|C/-|frameshift_variant IL27|p.A139Pfs*2|1|0.32|ENSG00000197272|chr16:28502023-28502023|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7692260742188 2 547.383386 1092.75222 0.33239 0.00018195 -2.481 -0.001358 -2.1486 -0.0011761 547.3816691374777 143.41 0.20648 143.41 143.31 143.52 0 6 5 2 0 0 0 0.91149 1 28632 28632 0.40072 0 1 1810500 42413 7348 28196 28213 41790 41790 0.20955270658555492 SLLLLRLLGP 10 Unmodified _SLLLLRLLGP_ 0 0 0 ENSG00000139540|ENST00000454355|SLC39A5 ENSG00000139540|ENST00000454355|SLC39A5 ENSG00000139540|ENST00000454355|SLC39A5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.76806640625 2 547.868434 1093.72232 NaN NaN NaN NaN NaN NaN NaN 160.91 1 156.12 155.62 156.62 -4.7952 0 0 0 0.22588 1 31999 31999 1.6526 0 1 42414 4253 28197 28214 41791 41791 0.1792033171325329 SLLLLWGLAT 10 Unmodified _SLLLLWGLAT_ 0 0 0 ENSG00000186190|ENST00000375494|BPIFB3 ENSG00000186190|ENST00000375494|BPIFB3 ENSG00000186190|ENST00000375494|BPIFB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7926025390625 2 543.831517 1085.64848 NaN NaN NaN NaN NaN NaN NaN 156.39 1 156.39 155.89 156.89 0 0 0 0 0.22588 1 31376 31376 10.074 0 1 42415 7042 28198 28215 41792 41792 0.10908363550902322 SLLLPILKH 9 Unmodified _SLLLPILKH_ 0 0 0 REV__ENSG00000164818|ENST00000297440|DNAAF5 REV__ENSG00000164818|ENST00000297440|DNAAF5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 345.2315979003906 3 345.23046 1032.66955 NaN NaN NaN NaN NaN NaN NaN 38.667 1 36.262 35.762 36.762 -2.4049 0 0 0 0.23508 1 6887 6887 1.0715 0.29493 1 + 42416 17712 28199 28216 41793 41793 0.1545237365041885 SLLLRLLLPL 10 Unmodified _SLLLRLLLPL_ 0 0 0 REV__ENSG00000262179|ENST00000573382|MYMX REV__ENSG00000262179|ENST00000573382|MYMX MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3350830078125 2 575.899734 1149.78492 0.45918 0.00026444 4.3322 0.0024949 4.7914 0.0027594 575.8999937463042 161 0.17682 155.75 155.67 155.84 -5.2526 6 4 2 0 0 0 0.91149 1 31231 31231 0.40072 0 1 1562800 + 42417 19891 28200 28217 41794 41794 0.21601477781428002 SLLLWFIA 8 Unmodified _SLLLWFIA_ 0 0 0 REV__nc|ENSG00000211815|A0A075B6V5|TRAV36DV7 REV__nc|ENSG00000211815|A0A075B6V5|TRAV36DV7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7871398925781 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 118.34 1 118.34 117.84 118.84 0 0 0 0 0.21323 1 23308 23308 14.582 0 1 + 42418 24257 28201 28218 41795 41795 0.08137037804942793 SLLNDGRPSQ 10 Unmodified _SLLNDGRPSQ_ 0 0 0 REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;REV__nc|ENSG00000134668|Q6ZMY3-5|SPOCD1 REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7783203125 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 169.28 1 164.4 163.9 164.9 -4.873 0 0 0 0.22559 1 33423 33423 17.113 5.4726 1 + 42419 16221;24047 28202 28219 41796 41796 0.0071846546118194965 SLLNEPALV 9 Unmodified _SLLNEPALV_ 0 0 0 TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7373046875 2 478.276575 954.538597 -0.073562 -3.5183E-05 0.31219 0.00014931 0.23863 0.00011413 478.2767174556204 149.16 0.65704 149.16 148.82 149.48 0 25 18 2 0 0 0 0.15889 1 29875 29875 26.995 12.009 1 1994200 42420 3788 28203 28220 41797 41797 0.05950938211697121 SLLNEPALV 9 Unmodified _SLLNEPALV_ 0 0 0 TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73748779296875 2 478.276575 954.538597 0.13949 6.6716E-05 -0.0099483 -4.758E-06 0.12954 6.1958E-05 478.2764770550877 154.03 0.67683 149.26 148.9 149.58 -4.7684 36 18 2 0 0 0 0.066439 1 30633 30633 36.81 21.824 1 3131900 42421 3788 28203 28220 41798 41798 0.05950938211697121 SLLNEPALV 9 Unmodified _SLLNEPALV_ 0 0 0 TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.77825927734375 2 478.276575 954.538597 0.40048 0.00019154 -0.18985 -9.0801E-05 0.21063 0.00010074 478.276453553953 154.6 0.7448 149.35 148.94 149.69 -5.2527 36 20 2 0 0 0 0.58921 1 30038 30038 8.1555 1.9497 1 2715100 42422 3788 28203 28220 41799 41799 0.05950938211697121 SLLNEPALV 9 Unmodified _SLLNEPALV_ 0 0 0 TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.276575 954.538597 0.14554 6.9606E-05 -0.020351 -9.7335E-06 0.12518 5.9873E-05 478.27657075889596 154.58 0.70038 149.29 148.98 149.68 -5.2854 0.026753 -7.7294E-06 NaN 36.81 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2194600 42423 3788 28203 28220 0.05950938211697121 SLLNNVALN 9 Unmodified _SLLNNVALN_ 0 0 0 REV__ENST00000518145.1_1_8:103358389-103359193:-|nuORF;REV__nc|ENSG00000104517|O95071-2|UBR5 REV__ENST00000518145.1_1_8:103358389-103359193:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7378845214844 2 479.271824 956.529095 0.33046 0.00015838 -0.066965 -3.2094E-05 0.26349 0.00012629 479.27172952965964 70.754 0.74059 67.286 66.919 67.66 -3.467 46 20 3 0 0 0 0.11171 1 13402 13402 27.629 0 1 7578200 + 42424 22603;14924 28204 28221 41800 41800 0.049091699261907706 SLLNRISVAL 10 Unmodified _SLLNRISVAL_ 0 0 0 REV__ENST00000477312.1_1_3:196863310-196867015:-|nuORF REV__ENST00000477312.1_1_3:196863310-196867015:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.780029296875 2 543.337498 1084.66044 0.39554 0.00021491 1.5824 0.0008598 1.978 0.0010747 543.8423984545968 159.31 0.25526 154.52 154.37 154.62 -4.7952 9 6 2 0 0 0 0.90091 1 31681 31681 3.2813 0 1 990660 + 42425 22118 28205 28222 41801 41801 0.12149980294088891 SLLNSSLDLKI 11 Unmodified _SLLNSSLDLKI_ 0 0 0 REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2947387695312 2 601.853178 1201.6918 1.172 0.00070536 -0.93571 -0.00056316 0.23627 0.0001422 601.8525334364215 117.39 0.80778 112.9 112.49 113.3 -4.486 74 22 4 0 0 0 0.06442 1 23129 23129 111.31 20.224 1 34502000 + 42426 16513 28206 28223 41802 41802 0.09902508537516042 SLLNSSLDLKI 11 Unmodified _SLLNSSLDLKI_ 0 0 0 REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2736206054688 2 601.853178 1201.6918 0.74328 0.00044734 -0.35562 -0.00021403 0.38766 0.00023331 601.8529047306215 117.52 0.80158 112.91 112.55 113.35 -4.6106 74 22 4 0 0 0 0.084202 1 22570 22570 121.5 20.795 1 35207000 + 42427 16513 28206 28223 41803 41803 0.09902508537516042 SLLNSSLDLKI 11 Unmodified _SLLNSSLDLKI_ 0 0 0 REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.29736328125 2 601.853178 1201.6918 0.74328 0.00044734 -0.35562 -0.00021403 0.38766 0.00023331 601.8529047306215 117.52 0.80158 112.91 112.55 113.35 -4.6106 74 22 4 0 0 0 0.32236 1 22499 22499 49.742 9.017 1 35207000 + 42428 16513 28206 28223 41804 41804 0.09902508537516042 SLLNSSLDLKI 11 Unmodified _SLLNSSLDLKI_ 0 0 0 REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2833251953125 2 601.853178 1201.6918 0.53409 0.00032144 -0.11841 -7.1264E-05 0.41568 0.00025018 601.8530384174348 117.32 0.86001 112.96 112.62 113.48 -4.3585 80 23 5 0 0 0 0.3898 1 22534 22534 46.022 5.2974 1 27375000 + 42429 16513 28206 28223 41805 41805 0.09902508537516042 SLLNSSLDLKI 11 Unmodified _SLLNSSLDLKI_ 0 0 0 REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 601.853178 1201.6918 1.172 0.00070536 -0.93571 -0.00056316 0.23627 0.0001422 601.8525334364215 117.39 0.80778 112.9 112.49 113.3 -4.486 -0.022551 -0.00058097 NaN 111.31 74 22 4 NaN NaN NaN NaN 0 NaN NaN 0 34502000 + 42430 16513 28206 28223 0.09902508537516042 SLLPPDALVGL 11 Unmodified _SLLPPDALVGL_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.787109375 2 547.826432 1093.63831 0.34084 0.00018672 -0.10001 -5.4786E-05 0.24084 0.00013194 547.8265691908948 172.32 0.79572 172.32 172.08 172.87 0 29 22 2 0 0 0 4.6631E-10 4 35586 35586;35588;35603;35608 114.65 63.019 1 7623300 42431 2056 28207 28224 41806;41807;41808;41809 41806 0.0952375582564855 SLLPPDALVGL 11 Unmodified _SLLPPDALVGL_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.5742797851562 2 547.826432 1093.63831 0.45622 0.00024993 -0.0058124 -3.1842E-06 0.45041 0.00024675 547.8264657751026 173.28 0.94049 168.49 168.3 169.25 -4.7898 32 26 2 0 0 0 1.0337E-25 4 35343 35343;35368;35514;35518 118.89 60.845 1 11904000 42432 2056 28207 28224 41810;41811;41812;41813 41810 0.0952375582564855 SLLPPDALVGL 11 Unmodified _SLLPPDALVGL_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7822875976562 2 547.826432 1093.63831 NaN NaN NaN NaN NaN NaN NaN 173.54 1 168.65 168.15 169.15 -4.8977 0 0 0 0.0049198 1 34463 34463 54.032 31.923 1 42433 2056 28207 28224 41814 41814 0.0952375582564855 SLLPPDALVGL 11 Unmodified _SLLPPDALVGL_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7681884765625 2 547.826432 1093.63831 NaN NaN NaN NaN NaN NaN NaN 173.93 1 169.04 168.54 169.54 -4.8845 0 0 0 0.12979 1 34544 34544 31.268 10.854 1 42434 2056 28207 28224 41815 41815 0.0952375582564855 SLLPPDALVGL 11 Unmodified _SLLPPDALVGL_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7711181640625 2 547.826432 1093.63831 NaN NaN NaN NaN NaN NaN NaN 173.85 1 168.96 168.46 169.46 -4.8916 0 0 0 0.00014659 1 34580 34580 88.954 49.004 1 42435 2056 28207 28224 41816 41816 0.0952375582564855 SLLPRPYHL 9 Unmodified _SLLPRPYHL_ 0 0 0 REV__ENST00000246015.8_2_20:1099282-1099507:+|nuORF REV__ENST00000246015.8_2_20:1099282-1099507:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7669677734375 2 548.319109 1094.62366 0.098884 5.422E-05 -2.412 -0.0013226 -2.3131 -0.0012683 548.3186345999729 138.76 0.18042 133.81 133.7 133.88 -4.952 6 4 2 0 0 0 0.8319 1 26670 26670 4.3292 0 1 1027900 + 42436 20098 28208 28225 41817 41817 0.0801372846817685 SLLQTLYKV 9 Unmodified _SLLQTLYKV_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2781982421875 2 532.82115 1063.62775 0.09864 5.2558E-05 0.32005 0.00017053 0.41869 0.00022309 532.8214426648802 156.46 0.61469 156.46 156.21 156.83 0 25 17 2 0 0 0 0.46882 1 31455 31455 21.537 6.6987 1 2587500 42437 1971 28209 28226 41818 41818 0.09847773171213703 SLLQTLYKV 9 Unmodified _SLLQTLYKV_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27392578125 2 532.82115 1063.62775 0.25011 0.00013327 0.54351 0.00028959 0.79362 0.00042286 532.8213963923583 160.98 0.59676 156.18 155.86 156.45 -4.7952 25 16 2 0 0 0 0.10537 1 31969 31969 37.075 29.598 1 2228800 42438 1971 28209 28226 41819 41819 0.09847773171213703 SLLQTLYKV 9 Unmodified _SLLQTLYKV_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.267578125 2 532.82115 1063.62775 0.50867 0.00027103 -1.5661 -0.00083444 -1.0574 -0.00056342 532.8207807815834 161.56 0.49504 156.37 156.22 156.72 -5.1878 24 13 2 0 0 0 0.27464 1 31361 31361 37.075 33.971 1 1880100 42439 1971 28209 28226 41820 41820 0.09847773171213703 SLLRAVFFE 9 Unmodified _SLLRAVFFE_ 0 0 0 ENST00000335420.9_1_7:129772789-129772981:+|nuORF ENST00000335420.9_1_7:129772789-129772981:+|nuORF ENST00000335420.9_1_7:129772789-129772981:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2716674804688 2 541.305667 1080.59678 0.31089 0.00016829 -1.4657 -0.00079339 -1.1548 -0.0006251 541.3064973022716 111.33 0.17078 111.33 111.24 111.41 0 5 4 2 0 0 0 0.74655 1 21894 21894 10.824 0 1 1152200 42440 8799 28210 28227 41821 41821 0.059706198569983826 SLLRQKHLA 9 Unmodified _SLLRQKHLA_ 0 0 0 REV__ENSG00000007545|ENST00000397412|CRAMP1 REV__ENSG00000007545|ENST00000397412|CRAMP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2638549804688 2 533.330008 1064.64546 NaN NaN NaN NaN NaN NaN NaN 148.01 1 143.3 142.8 143.8 -4.7095 0 0 0 0.23508 1 29385 29385 4.756 0.42677 1 + 42441 13892 28211 28228 41822 41822 0.1157253321675853 SLLRRLVLKY 10 Unmodified _SLLRRLVLKY_ 0 0 0 ENST00000519314.5_1_8:58055402-58113609:+|nuORF ENST00000519314.5_1_8:58055402-58113609:+|nuORF ENST00000519314.5_1_8:58055402-58113609:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7547607421875 2 630.911165 1259.80778 NaN NaN NaN NaN NaN NaN NaN 148.24 1 143.18 142.68 143.68 -5.0595 0 0 0 0.22588 1 28711 28711 3.9444 0.66309 1 42442 10818 28212 28229 41823 41823 0.1882649689889604 SLLRSLDYE 9 Unmodified _SLLRSLDYE_ 0 0 0 nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-3|PCDH15;PCDH15|p.K1263Rfs*2|2|0.31|ENSG00000150275|chr10:53857193-53857193|T/-|frameshift_variant;nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15 nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15 nc|ENSG00000150275|Q96QU1|PCDH15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7772827148438 2 548.287671 1094.56079 0.023736 1.3014E-05 0.28058 0.00015384 0.30431 0.00016685 548.2877701584541 43.667 0.34957 40.92 40.73 41.08 -2.7475 13 9 2 0 0 0 0.84208 1 7850 7850 7.2892 1.5288 1 902960 42443 12384;12383 28213 28230 41824 41824 0.017291178894765835 SLLRVGWSV 9 Unmodified _SLLRVGWSV_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 508.3287048339844 2 508.798009 1015.58147 -0.22739 -0.0001157 -0.019933 -1.0142E-05 -0.24732 -0.00012584 508.79808743939714 156.21 0.59131 150.93 150.65 151.24 -5.2854 22 16 2 0 0 0 0.58921 1 30286 30286 8.1555 0 1 1581300 42444 7732 28214 28231 41825 41825 0.07429753059807354 SLLRVGWSV 9 Unmodified _SLLRVGWSV_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 508.798009 1015.58147 0.20614 0.00010488 0.009585 4.8768E-06 0.21572 0.00010976 508.79776947801736 151.04 0.42152 151.04 150.85 151.27 0 0.080397 0.00040512 NaN 12.241 17 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1746400 42445 7732 28214 28231 0.07429753059807354 SLLRVGWSV 9 Unmodified _SLLRVGWSV_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 508.798009 1015.58147 0.052859 2.6895E-05 -0.66452 -0.00033811 -0.61166 -0.00031121 508.7976549183942 155.67 0.60706 150.89 150.48 151.09 -4.7791 -0.068791 -0.00028085 NaN 12.241 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1911700 42446 7732 28214 28231 0.07429753059807354 SLLSGRISTL 10 Unmodified _SLLSGRISTL_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;ENST00000600552.5_1_19:41083005-41084032:+|nuORF;ENST00000598558.5_1_19:41083239-41086365:+|nuORF;KCTD3|p.G267Efs*15|1|0.26|ENSG00000136636|chr1:215586664-215586664|G/-|frameshift_variant;KCTD3|p.R348Afs*5|1|0.41|ENSG00000136636|chr1:215602097-215602098|-/C|frameshift_variant;ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000136636|ENST00000259154|KCTD3 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.68212890625 2 523.813856 1045.61316 0.1809 9.4756E-05 -0.60051 -0.00031456 -0.41962 -0.0002198 523.8133440436742 128.97 0.56387 128.97 128.56 129.13 0 22 15 2 0 0 0 0.52698 1 25461 25461 42.312 4.1369 1 1156000 42447 5252;4025 28215 28232 41826 41826 0.0921770102308983 SLLSGRISTL 10 Unmodified _SLLSGRISTL_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;ENST00000600552.5_1_19:41083005-41084032:+|nuORF;ENST00000598558.5_1_19:41083239-41086365:+|nuORF;KCTD3|p.G267Efs*15|1|0.26|ENSG00000136636|chr1:215586664-215586664|G/-|frameshift_variant;KCTD3|p.R348Afs*5|1|0.41|ENSG00000136636|chr1:215602097-215602098|-/C|frameshift_variant;ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000136636|ENST00000259154|KCTD3 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6771240234375 2 523.813856 1045.61316 -0.18713 -9.8023E-05 0.12408 6.4995E-05 -0.063052 -3.3028E-05 523.8137529111133 133.03 0.87749 128.39 127.95 128.82 -4.6399 31 24 2 0 0 0 0.37762 1 26244 26244 51.488 7.5061 1 3039300 42448 5252;4025 28215 28232 41827 41827 0.0921770102308983 SLLSGRISTL 10 Unmodified _SLLSGRISTL_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;ENST00000600552.5_1_19:41083005-41084032:+|nuORF;ENST00000598558.5_1_19:41083239-41086365:+|nuORF;KCTD3|p.G267Efs*15|1|0.26|ENSG00000136636|chr1:215586664-215586664|G/-|frameshift_variant;KCTD3|p.R348Afs*5|1|0.41|ENSG00000136636|chr1:215602097-215602098|-/C|frameshift_variant;ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000136636|ENST00000259154|KCTD3 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6962280273438 2 523.813856 1045.61316 -0.49886 -0.00026131 0.85374 0.0004472 0.35488 0.00018589 523.8142690281616 133.37 0.62851 128.5 128.19 128.82 -4.8726 24 17 2 0 0 0 0.092113 3 25649 25615;25649;25668 63.227 5.7717 1 2019900 42449 5252;4025 28215 28232 41828;41829;41830 41829 0.0921770102308983 SLLSGRISTL 10 Unmodified _SLLSGRISTL_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;ENST00000600552.5_1_19:41083005-41084032:+|nuORF;ENST00000598558.5_1_19:41083239-41086365:+|nuORF;KCTD3|p.G267Efs*15|1|0.26|ENSG00000136636|chr1:215586664-215586664|G/-|frameshift_variant;KCTD3|p.R348Afs*5|1|0.41|ENSG00000136636|chr1:215602097-215602098|-/C|frameshift_variant;ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000136636|ENST00000259154|KCTD3 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.813856 1045.61316 0.25281 0.00013243 0.49908 0.00026142 0.75189 0.00039385 523.8139685126779 133.38 0.5356 128.56 128.31 128.84 -4.8175 0.077237 -2.4924E-05 NaN 63.227 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2262300 42450 5252;4025 28215 28232 0.0921770102308983 SLLSQLNALQ 10 Unmodified _SLLSQLNALQ_ 0 0 0 REV__ENSG00000171431|ENST00000167588|KRT20 REV__ENSG00000171431|ENST00000167588|KRT20 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7696533203125 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 169.8 1 165.01 164.51 165.51 -4.7898 0 0 0 0.22588 1 34413 34413 13.042 0.80181 1 + + 42451 13528 28216 28233 41831 41831 0.06869397160471635 SLLSSPYY 8 Unmodified _SLLSSPYY_ 0 0 0 nc|ENSG00000125618|Q06710-2|PAX8;ENST00000465084.1_1_2:113976112-113984685:-|nuORF;ENST00000480684.1_1_2:113976112-113977768:-|nuORF;ENSG00000125618|ENST00000429538|PAX8 nc|ENSG00000125618|Q06710-2|PAX8 nc|ENSG00000125618|Q06710-2|PAX8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2384033203125 2 465.234376 928.454199 0.36331 0.00016902 3.0162 0.0014032 3.3795 0.0015723 465.2366503319144 21.161 0.52382 19.687 19.456 19.98 -1.4742 23 14 2 0 0 0 0.72861 1 3627 3627 10.183 4.423 1 516130 42452 12305 28217 28234 41832 41832 -0.012890126050479012 SLLSSSLFAPE 11 Unmodified _SLLSSSLFAPE_ 0 0 0 REV__ENST00000489830.5_1_3:185782080-185797655:-|nuORF REV__ENST00000489830.5_1_3:185782080-185797655:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3326416015625 2 575.803154 1149.59175 0.15135 8.7149E-05 -0.06021 -3.4669E-05 0.091142 5.248E-05 575.8031031243903 135.6 0.49661 130.7 130.46 130.96 -4.8951 21 13 2 0 0 0 0.64855 1 26079 26079 15.248 5.8654 1 3769000 + 42453 22297 28218 28235 41833 41833 0.02294271203709286 SLLTKLPRQP 10 Unmodified _SLLTKLPRQP_ 0 0 0 ENST00000470338.1_1_22:22316666-22317191:-|nuORF ENST00000470338.1_1_22:22316666-22317191:-|nuORF ENST00000470338.1_1_22:22316666-22317191:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3314819335938 2 576.858598 1151.70264 0.080653 4.6525E-05 -0.74138 -0.00042767 -0.66073 -0.00038115 577.3613632664413 141.64 0.1387 136.99 136.89 137.02 -4.6493 5 3 2 0 0 0 0.91149 1 27975 27975 3.5965 0 1 1826200 42454 10196 28219 28236 41834 41834 0.13285955702440333 SLLTLRATDP 10 Unmodified _SLLTLRATDP_ 0 0 0 DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant;ENSG00000166341|ENST00000299441|DCHS1 DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7861938476562 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 96.244 1 92.363 91.863 92.863 -3.881 0 0 0 2.8426 1 18472 18472 0.26539 0.20152 1 42455 789 28220 28237 41835 41835 0.06869397160448898 SLLTSLMLV 9 Unmodified _SLLTSLMLV_ 0 0 0 nc|ENSG00000172426|Q9H1X1-2|RSPH9;ENSG00000172426|ENST00000372163|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 326.2236328125 3 326.196428 975.567454 NaN NaN NaN NaN NaN NaN NaN 116 1 111.51 111.01 112.01 -4.486 0 0 0 0.23508 1 22870 22870 1.0715 0 1 42456 12464 28221 28238 41836 41836 0.07869339516491891 SLLVLILFY 9 Unmodified _SLLVLILFY_ 0 0 0 ENST00000344836.8_1_16:8987722-8987791:-|nuORF ENST00000344836.8_1_16:8987722-8987791:-|nuORF ENST00000344836.8_1_16:8987722-8987791:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.27197265625 2 540.838811 1079.66307 0.18431 9.9684E-05 1.8464 0.00099862 2.0307 0.0010983 541.3422324511597 145.67 0.34413 140.56 140.45 140.79 -5.1108 15 9 2 0 0 0 0.86532 1 28158 28158 4.756 0 1 6516600 42457 8898 28222 28239 41837 41837 0.1264243569903556 SLMAGAGG 8 Unmodified _SLMAGAGG_ 0 0 0 ENST00000345097.8_1_14:89626539-89626743:-|nuORF ENST00000345097.8_1_14:89626539-89626743:-|nuORF ENST00000345097.8_1_14:89626539-89626743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.1695556640625 2 332.160157 662.30576 NaN NaN NaN NaN NaN NaN NaN 60.48 1 57.546 57.046 58.046 -2.9333 0 0 0 0.21486 1 11638 11638 5.2307 2.3415 1 42458 8903 28223 28240 41838 41838 -0.03890022059738385 SLMAGAGG 8 Unmodified _SLMAGAGG_ 0 0 0 ENST00000345097.8_1_14:89626539-89626743:-|nuORF ENST00000345097.8_1_14:89626539-89626743:-|nuORF ENST00000345097.8_1_14:89626539-89626743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.2058410644531 2 332.160157 662.30576 NaN NaN NaN NaN NaN NaN NaN 60.229 1 56.915 56.415 57.415 -3.3139 0 0 0 0.21486 1 11215 11215 5.7604 2.8712 1 42459 8903 28223 28240 41839 41839 -0.03890022059738385 SLMAGAGG 8 Unmodified _SLMAGAGG_ 0 0 0 ENST00000345097.8_1_14:89626539-89626743:-|nuORF ENST00000345097.8_1_14:89626539-89626743:-|nuORF ENST00000345097.8_1_14:89626539-89626743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.186279296875 2 332.160157 662.30576 NaN NaN NaN NaN NaN NaN NaN 60.527 1 57.213 56.713 57.713 -3.3139 0 0 0 0.21486 1 11274 11274 5.7604 2.8712 1 42460 8903 28223 28240 41840 41840 -0.03890022059738385 SLMCFSRGCEK 11 Unmodified _SLMCFSRGCEK_ 0 0 0 REV__ENSG00000197372|ENST00000359788|ZNF675 REV__ENSG00000197372|ENST00000359788|ZNF675 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.77734375 2 630.780318 1259.54608 NaN NaN NaN NaN NaN NaN NaN 145.21 1 140.54 140.04 141.04 -4.6694 0 0 0 0.23476 1 28776 28776 4.5289 0.58447 1 + 42461 19330 28224 28241 41841 41841 -0.07330736846188302 SLMDMIRTD 9 Unmodified _SLMDMIRTD_ 0 0 0 nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3 nc|ENSG00000107864|Q8NE35-2|CPEB3 nc|ENSG00000107864|Q8NE35-2|CPEB3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.259033203125 2 541.254459 1080.49437 NaN NaN NaN NaN NaN NaN NaN 137.26 1 132.62 132.12 133.12 -4.6413 0 0 0 0.21469 1 27088 27088 19.257 2.3147 1 42462 2444 28225 28242 41842 41842 -0.042661572684210114 SLMELRKKVG 10 Unmodified _SLMELRKKVG_ 0 0 0 tr|U7STC6|U7STC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01437PE=3SV=1 tr|U7STC6|U7STC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01437PE=3SV=1 tr|U7STC6|U7STC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01437PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7214050292969 3 387.565514 1159.67471 0.32768 0.000127 -0.39641 -0.00015363 -0.068724 -2.6635E-05 387.5654097276279 71.346 0.42478 67.767 67.47 67.895 -3.5798 19 11 2 0 0 0 0.91149 1 13454 13454 5.7834 5.7834 1 735960 42463 26139 28226 28243 41843 41843 0.10126309450720328 SLMETEGNY 9 Unmodified _SLMETEGNY_ 0 0 0 CON__Q148H6 CON__Q148H6 CON__Q148H6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.27978515625 2 522.221139 1042.42773 NaN NaN NaN NaN NaN NaN NaN 160.03 1 155.23 154.73 155.73 -4.7952 0 0 0 0.23508 1 31821 31821 7.2892 1.5574 1 + 42464 682 28227 28244 41844 41844 -0.09179069558695119 SLMFTVRC 8 Unmodified _SLMFTVRC_ 0 0 0 PSAP|p.A285Pfs*38|1|0.45|ENSG00000197746|chr10:71821933-71821933|G/-|frameshift_variant PSAP|p.A285Pfs*38|1|0.45|ENSG00000197746|chr10:71821933-71821933|G/-|frameshift_variant PSAP|p.A285Pfs*38|1|0.45|ENSG00000197746|chr10:71821933-71821933|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7388916015625 2 478.738248 955.461943 NaN NaN NaN NaN NaN NaN NaN 139.51 1 134.66 134.16 135.16 -4.8492 0 0 0 0.21486 1 26894 26894 11.64 0 1 42465 12836 28228 28245 41845 41845 -0.01756899880774654 SLMKCDLRAS 10 Unmodified _SLMKCDLRAS_ 0 0 0 NLRP11|p.N817Ifs*7|1|0.4|ENSG00000179873|chr19:55792364-55792364|T/-|frameshift_variant;nc|ENSG00000179873|P59045-3|NLRP11;nc|ENSG00000179873|P59045-2|NLRP11;ENSG00000179873|ENST00000589093|NLRP11 NLRP11|p.N817Ifs*7|1|0.4|ENSG00000179873|chr19:55792364-55792364|T/-|frameshift_variant NLRP11|p.N817Ifs*7|1|0.4|ENSG00000179873|chr19:55792364-55792364|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 562.28759765625 2 562.283551 1122.55255 0.28928 0.00016266 2.6567 0.0014938 2.946 0.0016565 562.7861577353436 137.84 0.20583 137.84 137.77 137.97 0 6 5 2 0 0 0 0.88533 1 27372 27372 5.2969 1.3525 1 2706300 42466 6647 28229 28246 41846 41846 -0.0038247562315518735 SLMKNTRI 8 Unmodified _SLMKNTRI_ 0 0 0 REV__RPL10|p.I99T|1|0.35|ENSG00000147403|chrX:154399908-154399908|T/C|missense_variant REV__RPL10|p.I99T|1|0.35|ENSG00000147403|chrX:154399908-154399908|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77691650390625 2 481.776219 961.537886 0.22642 0.00010908 1.4899 0.0007178 1.7163 0.00082688 481.7769056849545 34.42 0.41668 32.168 31.907 32.324 -2.2527 16 11 2 0 0 0 8448 1 6053 6053 3.5871 2.9057 1 949300 + 42467 24579 28230 28247 41847 41847 0.05557820291005555 SLMKPAWS 8 Unmodified _SLMKPAWS_ 0 0 0 NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant;nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3 NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.240234375 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 39.456 1 39.456 38.956 39.956 0 0 0 0 0.20462 1 7325 7325 21.747 7.8406 1 42468 7256 28231 28248 41848 41848 0.0008305747962822352 SLMLKKKL 8 Unmodified _SLMLKKKL_ 0 0 0 ENST00000569028.2_1_16:34712445-34712784:-|nuORF ENST00000569028.2_1_16:34712445-34712784:-|nuORF ENST00000569028.2_1_16:34712445-34712784:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2505187988281 2 480.817356 959.620159 NaN NaN NaN NaN NaN NaN NaN 52.617 1 49.733 49.233 50.233 -2.8837 0 0 0 0.21486 1 10017 10017 2.5775 0 1 42469 11403 28232 28249 41849 41849 0.1387334236994775 SLMLLTLSLK 10 Unmodified _SLMLLTLSLK_ 0 0 0 REV__ENST00000359276.8_1_X:16716417-16717072:-|nuORF REV__ENST00000359276.8_1_X:16716417-16717072:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 560.2147216796875 2 559.84631 1117.67807 NaN NaN NaN NaN NaN NaN NaN 168.91 1 163.98 163.48 164.48 -4.9295 0 0 0 0.22588 1 33319 33319 6.2058 2.6093 1 + 42470 20849 28233 28250 41850 41850 0.12393559504721452 SLMLRLYV 8 Unmodified _SLMLRLYV_ 0 0 0 nc|ENSG00000137491|O94956-4|SLCO2B1;nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1 nc|ENSG00000137491|O94956-4|SLCO2B1 nc|ENSG00000137491|O94956-4|SLCO2B1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.1961975097656 3 332.196651 993.568123 NaN NaN NaN NaN NaN NaN NaN 60.586 1 57.653 57.153 58.153 -2.9333 0 0 0 0.21486 1 11662 11662 6.7232 0 1 42471 4087 28234 28251 41851 41851 0.07108178956184474 SLMQKDYPP 9 Unmodified _SLMQKDYPP_ 0 0 0 REV__TBX4|p.Q376K|1|0.37|ENSG00000121075|chr17:61483004-61483004|C/A|missense_variant REV__TBX4|p.Q376K|1|0.37|ENSG00000121075|chr17:61483004-61483004|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2378234863281 3 360.179437 1077.51648 NaN NaN NaN NaN NaN NaN NaN 58.318 1 58.318 57.818 58.818 0 0 0 0 0.23508 1 11157 11157 1.0715 0.3738 1 + 42472 24776 28235 28252 41852 41852 -0.019176095283455652 SLMRCIVPGA 10 Unmodified _SLMRCIVPGA_ 0 0 0 REV__SLC2A13|p.T491Qfs*41|1|0.08|ENSG00000151229|chr12:39764833-39764833|T/-|frameshift_variant REV__SLC2A13|p.T491Qfs*41|1|0.08|ENSG00000151229|chr12:39764833-39764833|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6915283203125 2 523.777905 1045.54126 0.59714 0.00031277 -1.2394 -0.00064916 -0.64223 -0.00033639 523.7772878015147 80.059 0.24657 80.059 79.864 80.11 0 8 6 2 0 0 0 1.09 1 15556 15556 0.51642 0 1 1104300 + 42473 17054 28236 28253 41853 41853 0.02030747073376915 SLMRQSCQI 9 Unmodified _SLMRQSCQI_ 0 0 0 REV__ENSG00000127419|ENST00000264771|TMEM175 REV__ENSG00000127419|ENST00000264771|TMEM175 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2627563476562 2 533.262619 1064.51068 NaN NaN NaN NaN NaN NaN NaN 158.65 1 158.65 158.15 159.15 0 0 0 0 0.23508 1 31854 31854 12.532 0 1 + 42474 15886 28237 28254 41854 41854 -0.018990313116773905 SLMTKEISSV 10 Unmodified _SLMTKEISSV_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7916870117188 2 547.791732 1093.56891 0.17788 9.744E-05 0.26582 0.00014562 0.4437 0.00024306 547.7920538564452 95.448 0.79821 95.448 95.142 95.94 0 35 22 3 0 0 0 0.07367 2 18705 18662;18705 73.196 6.7396 1 2803300 42475 7917 28238 28255 41855;41856 41856 0.025869288145713654 SLMTKEISSV 10 Unmodified _SLMTKEISSV_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.791748046875 2 547.791732 1093.56891 0.21895 0.00011994 0.2154 0.00011799 0.43435 0.00023793 547.7917141956357 99.196 0.65858 95.064 94.679 95.338 -4.1326 44 18 3 0 0 0 0.00095953 1 19481 19481 117.84 32.196 1 6327900 42476 7917 28238 28255 41857 41857 0.025869288145713654 SLMTKEISSV 10 Unmodified _SLMTKEISSV_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7918090820312 2 547.791732 1093.56891 0.26007 0.00014247 0.10724 5.8743E-05 0.36731 0.00020121 547.7916294054138 99.416 0.61961 95.147 94.791 95.411 -4.2692 32 17 2 0 0 0 0.00016845 3 18999 18956;18999;19048 124.95 32.3 1 7255400 42477 7917 28238 28255 41858;41859;41860 41859 0.025869288145713654 SLMTKEISSV 10 Unmodified _SLMTKEISSV_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7919921875 2 547.791732 1093.56891 0.2615 0.00014325 0.11901 6.5193E-05 0.38051 0.00020844 547.7917859795388 99.132 0.75658 95.176 94.799 95.555 -3.9564 39 21 3 0 0 0 0.016887 2 19051 19002;19051 97.741 31.284 1 4687800 42478 7917 28238 28255 41861;41862 41862 0.025869288145713654 SLMTNPVSI 9 Unmodified _SLMTNPVSI_ 0 0 0 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2549743652344 2 481.254785 960.495018 0.075178 3.618E-05 -0.40324 -0.00019406 -0.32806 -0.00015788 481.2547901951694 139.93 0.52573 135.28 134.89 135.42 -4.6439 16 14 2 0 0 0 0.019872 1 27624 27624 92.491 42.558 1 1312600 42479 2690 28239 28256 41863 41863 0.013190054429401243 SLMTNPVSI 9 Unmodified _SLMTNPVSI_ 0 0 0 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25482177734375 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 140.19 1 135.24 134.74 135.74 -4.952 0 0 0 0.05968 1 26981 26981 47.749 9.7747 1 42480 2690 28239 28256 41864 41864 0.013190054429401243 SLMTNPVSI 9 Unmodified _SLMTNPVSI_ 0 0 0 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2539978027344 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 140.46 1 135.47 134.97 135.97 -4.9877 0 0 0 0.070386 1 27034 27034 43.858 14.777 1 42481 2690 28239 28256 41865 41865 0.013190054429401243 SLMTNPVSI 9 Unmodified _SLMTNPVSI_ 0 0 0 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25469970703125 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 140.29 1 135.45 134.95 135.95 -4.8492 0 0 0 0.11195 1 27051 27051 36.127 5.4905 1 42482 2690 28239 28256 41866 41866 0.013190054429401243 SLMYTLFLFIF 11 Unmodified _SLMYTLFLFIF_ 0 0 0 REV__OR6C4|p.F101Lfs*31|1|0.49|ENSG00000179626|chr12:55551523-55551523|T/-|frameshift_variant REV__OR6C4|p.F101Lfs*31|1|0.49|ENSG00000179626|chr12:55551523-55551523|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 697.843505859375 2 697.875068 1393.73558 NaN NaN NaN NaN NaN NaN NaN 162.56 1 162.56 162.06 163.06 0 0 0 0 0.23634 1 32690 32690 3.2813 0 1 + 42483 18663 28240 28257 41867 41867 0.05446401710264581 SLNDFYGK 8 Unmodified _SLNDFYGK_ 0 0 0 REV__DNAJC28|p.D216Y|1|0.35|ENSG00000177692|chr21:33488748-33488748|C/A|missense_variant REV__DNAJC28|p.D216Y|1|0.35|ENSG00000177692|chr21:33488748-33488748|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1571044921875 3 315.155509 942.444697 NaN NaN NaN NaN NaN NaN NaN 122.9 1 118.31 117.81 118.81 -4.5926 0 0 0 0.21486 1 23658 23658 1.4819 0.15237 1 + 42484 13726 28241 28258 41868 41868 -0.028827808905589336 SLNDGFYAG 9 Unmodified _SLNDGFYAG_ 0 0 0 REV__tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1 REV__tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1563415527344 3 315.14338 942.408311 NaN NaN NaN NaN NaN NaN NaN 82.878 1 79.27 78.77 79.77 -3.6079 0 0 0 0.23508 1 16198 16198 1.0715 0 1 + 42485 25159 28242 28259 41869 41869 -0.0651965778728254 SLNDHMGQ 8 Unmodified _SLNDHMGQ_ 0 0 0 ATP8B3|p.L486M|1|0.4|ENSG00000130270|chr19:1800043-1800043|G/T|missense_variant ATP8B3|p.L486M|1|0.4|ENSG00000130270|chr19:1800043-1800043|G/T|missense_variant ATP8B3|p.L486M|1|0.4|ENSG00000130270|chr19:1800043-1800043|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 301.13287353515625 3 301.132598 900.375965 NaN NaN NaN NaN NaN NaN NaN 116.98 1 112.62 112.12 113.12 -4.3585 0 0 0 0.21486 1 22519 22519 0.40072 0 1 42486 277 28243 28260 41870 41870 -0.07820768461920125 SLNHFTHS 8 Unmodified _SLNHFTHS_ 0 0 0 nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7 nc|ENSG00000083223|Q5VYS8-4|TUT7 nc|ENSG00000083223|Q5VYS8-4|TUT7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.8190612792969 3 314.819119 941.435529 NaN NaN NaN NaN NaN NaN NaN 97.777 1 93.858 93.358 94.358 -3.9194 0 0 0 0.23025 1 18767 18767 0.30703 0 1 42487 1651 28244 28261 41871 41871 -0.03753129456254101 SLNKELDTY 9 Unmodified _SLNKELDTY_ 0 0 0 CCDC180|p.L667Tfs*8|1|0.13|ENSG00000197816|chr9:97330353-97330354|-/A|frameshift_variant;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF;CCDC180|p.S1054Lfs*19|1|0.44|ENSG00000197816|chr9:97354591-97354591|T/-|frameshift_variant;CCDC180|p.K1351Sfs*28|1|0.14|ENSG00000197816|chr9:97364063-97364063|C/-|frameshift_variant;CCDC180|p.K1583Nfs*17|3|0.32|ENSG00000197816|chr9:97374551-97374551|C/-|frameshift_variant;ENSG00000197816|ENST00000529487|CCDC180;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000529787.2_1_9:100053158-100088872:+|nuORF CCDC180|p.L667Tfs*8|1|0.13|ENSG00000197816|chr9:97330353-97330354|-/A|frameshift_variant CCDC180|p.L667Tfs*8|1|0.13|ENSG00000197816|chr9:97330353-97330354|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2584838867188 2 541.771854 1081.52915 0.37491 0.00020312 -0.12064 -6.536E-05 0.25427 0.00013776 541.7718691880441 124.48 0.5172 119.9 119.63 120.14 -4.5757 19 14 2 0 0 0 0.80521 1 24556 24556 6.7232 0.51738 1 1200700 42488 418 28245 28262 41872 41872 -0.0083487486449485 SLNKLCTH 8 Unmodified _SLNKLCTH_ 0 0 0 REV__ENST00000556605.5_1_14:69865950-69866031:+|nuORF REV__ENST00000556605.5_1_14:69865950-69866031:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2388916015625 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 71.072 1 67.605 67.105 68.105 -3.467 0 0 0 0.21486 1 13465 13465 12.532 3.1841 1 + 42489 22999 28246 28263 41873 41873 0.003732718485366604 SLNLIEQK 8 Unmodified _SLNLIEQK_ 0 0 0 REV__ENSG00000215421|ENST00000299687|ZNF407 REV__ENSG00000215421|ENST00000299687|ZNF407 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1563415527344 3 315.518559 943.533846 0.096995 3.0604E-05 -0.24144 -7.6177E-05 -0.14444 -4.5574E-05 315.51842304689234 20.912 0.42571 19.438 19.24 19.665 -1.4742 26 11 3 0 0 0 1.0267 1 3491 3491 3.5965 2.1146 1 2348700 + 42490 19688 28247 28264 41874 41874 0.059820540689429436 SLNLIEQK 8 Unmodified _SLNLIEQK_ 0 0 0 REV__ENSG00000215421|ENST00000299687|ZNF407 REV__ENSG00000215421|ENST00000299687|ZNF407 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 315.518559 943.533846 -0.51977 -0.000164 0.41728 0.00013166 -0.10249 -3.2337E-05 315.51864425392023 19.526 0.44805 19.526 19.31 19.758 0 0.065773 0.00029053 NaN 3.5965 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3085600 + 42491 19688 28247 28264 0.059820540689429436 SLNLIEQK 8 Unmodified _SLNLIEQK_ 0 0 0 REV__ENSG00000215421|ENST00000299687|ZNF407 REV__ENSG00000215421|ENST00000299687|ZNF407 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 315.518559 943.533846 -0.21998 -6.9407E-05 0.088546 2.7938E-05 -0.13143 -4.1469E-05 315.5185307695919 20.801 0.37596 19.417 19.202 19.578 -1.3847 -0.043391 -2.0636E-05 NaN 3.5965 26 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2103700 + 42492 19688 28247 28264 0.059820540689429436 SLNLNLHIY 9 Unmodified _SLNLNLHIY_ 0 0 0 ENST00000556777.1_1_14:22932097-22932142:-|nuORF ENST00000556777.1_1_14:22932097-22932142:-|nuORF ENST00000556777.1_1_14:22932097-22932142:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7783203125 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 118.31 1 113.81 113.31 114.31 -4.502 0 0 0 0.21065 1 23327 23327 20.454 3.5113 1 42493 11248 28248 28265 41875 41875 0.04757431851635374 SLNNQKYI 8 Unmodified _SLNNQKYI_ 0 0 0 REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2641296386719 2 490.263999 978.513445 0.080788 3.9608E-05 0.21972 0.00010772 0.3005 0.00014733 490.2641523399602 102.54 0.52681 98.359 98.027 98.554 -4.1861 21 14 2 0 0 0 0.49114 3 20150 20107;20124;20150 28.487 1.6032 1 1418700 + 42494 23940 28249 28266 41876;41877;41878 41878 0.023328834091330464 SLNNQKYI 8 Unmodified _SLNNQKYI_ 0 0 0 REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2636413574219 2 490.263999 978.513445 0.37748 0.00018506 0.58669 0.00028763 0.96416 0.00047269 490.264405409272 102.73 0.90856 98.413 98.045 98.954 -4.3208 30 25 2 0 0 0 0.49114 1 19640 19640 28.487 1.6032 1 1115300 + 42495 23940 28249 28266 41879 41879 0.023328834091330464 SLNNQKYI 8 Unmodified _SLNNQKYI_ 0 0 0 REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2648620605469 2 490.263999 978.513445 0.27829 0.00013644 0.5434 0.00026641 0.8217 0.00040285 490.2643432041311 102.48 0.57997 98.46 98.009 98.589 -4.0212 21 16 2 0 0 0 0.49114 2 19687 19662;19687 28.487 1.6032 1 937770 + 42496 23940 28249 28266 41880;41881 41881 0.023328834091330464 SLNTEKILSQA 11 Unmodified _SLNTEKILSQA_ 0 0 0 TTC13|p.R627Nfs*8|1|0.19|ENSG00000143643|chr1:230921438-230921439|TC/-|frameshift_variant;nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13 TTC13|p.R627Nfs*8|1|0.19|ENSG00000143643|chr1:230921438-230921439|TC/-|frameshift_variant TTC13|p.R627Nfs*8|1|0.19|ENSG00000143643|chr1:230921438-230921439|TC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2776489257812 2 602.33261 1202.65067 NaN NaN NaN NaN NaN NaN NaN 163.36 1 158.29 157.79 158.79 -5.0648 0 0 0 0.22595 1 31783 31783 11.495 0 1 42497 4510 28250 28267 41882 41882 0.05744747498056313 SLNTGIITV 9 Unmodified _SLNTGIITV_ 0 0 0 ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;nc|ENSG00000137845|O14672-2|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.93939208984375 2 459.26875 916.522947 0.23946 0.00010998 -0.071185 -3.2693E-05 0.16827 7.7282E-05 459.2686801873659 134.25 0.73177 134.25 133.87 134.6 0 39 20 3 0 0 0 0.0061515 1 26538 26538 47.987 32.509 1 5942400 42498 4121 28251 28268 41883 41883 0.06134651694662807 SLNTGIITV 9 Unmodified _SLNTGIITV_ 0 0 0 ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;nc|ENSG00000137845|O14672-2|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.26875 916.522947 0.024304 1.1162E-05 0.36269 0.00016657 0.38699 0.00017773 459.26884977446264 139.13 0.85692 134.18 133.78 134.64 -4.952 -0.011626 0.00014768 NaN 47.987 54 23 3 NaN NaN NaN NaN 0 NaN NaN 0 9570800 42499 4121 28251 28268 0.06134651694662807 SLNTGIITV 9 Unmodified _SLNTGIITV_ 0 0 0 ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;nc|ENSG00000137845|O14672-2|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.26875 916.522947 0.24854 0.00011415 0.17141 7.8724E-05 0.41995 0.00019287 459.26871741418773 139.1 0.70087 134.25 133.83 134.53 -4.8492 0.054679 -2.8014E-05 NaN 47.987 51 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6207800 42500 4121 28251 28268 0.06134651694662807 SLNTREFTL 9 Unmodified _SLNTREFTL_ 0 0 0 ENST00000435989.6_1_19:58384023-58384878:-|nuORF ENST00000435989.6_1_19:58384023-58384878:-|nuORF ENST00000435989.6_1_19:58384023-58384878:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2775268554688 2 540.787838 1079.56112 0.1429 7.7278E-05 0.40715 0.00022018 0.55005 0.00029746 540.7880639576412 135.27 0.70247 130.37 129.94 130.64 -4.8951 26 19 2 0 0 0 0.52242 1 26003 26003 22.736 0.98964 1 3225300 42501 9834 28252 28269 41884 41884 0.024525376093379236 SLNTSLPSP 9 Unmodified _SLNTSLPSP_ 0 0 0 nc|ENSG00000100354|Q9UPQ9-2|TNRC6B;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;ENSG00000100354|ENST00000454349|TNRC6B nc|ENSG00000100354|Q9UPQ9-2|TNRC6B nc|ENSG00000100354|Q9UPQ9-2|TNRC6B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2291259765625 2 458.242732 914.470912 -0.050696 -2.3231E-05 0.15706 7.1974E-05 0.10637 4.8743E-05 458.2427294345381 95.931 1.2375 91.882 91.479 92.717 -4.0496 73 35 3 0 0 0 0.30056 1 18920 18920 2.6312 1.4164 1 7306200 42502 1963 28253 28270 41885 41885 0.010254882809135779 SLNTSYREPN 10 Unmodified _SLNTSYREPN_ 0 0 0 REV__EDNRA|p.Y106Tfs*6|1|0.29|ENSG00000151617|chr4:147485995-147485995|T/-|frameshift_variant REV__EDNRA|p.Y106Tfs*6|1|0.29|ENSG00000151617|chr4:147485995-147485995|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.249755859375 2 590.783284 1179.55202 0.45823 0.00027072 0.038326 2.2642E-05 0.49656 0.00029336 590.7833150718621 46.004 0.3078 43.163 43.003 43.311 -2.8409 12 8 2 0 0 0 0.86856 1 8702 8702 11.495 2.7493 1 727840 + 42503 13775 28254 28271 41886 41886 -0.030578557470107626 SLPCGHLF 8 Unmodified _SLPCGHLF_ 0 0 0 ENST00000507522.1_1_5:251472-253152:+|nuORF ENST00000507522.1_1_5:251472-253152:+|nuORF ENST00000507522.1_1_5:251472-253152:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21649169921875 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 91.728 1 87.802 87.302 88.302 -3.9251 0 0 0 0.21323 1 17956 17956 14.582 1.0738 1 42504 10700 28255 28272 41887 41887 -0.01985498208887293 SLPCPRMSA 9 Unmodified _SLPCPRMSA_ 0 0 0 REV__nc|ENSG00000104368|P00750-2|PLAT REV__nc|ENSG00000104368|P00750-2|PLAT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2336120605469 2 481.23333 960.452107 NaN NaN NaN NaN NaN NaN NaN 127.2 1 122.5 122 123 -4.6998 0 0 0 0.22962 1 24470 24470 14.838 1.3304 1 + 42505 23984 28256 28273 41888 41888 -0.02970087886149031 SLPDLTTPL 9 Unmodified _SLPDLTTPL_ 0 0 0 KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.K873Nfs*8|4|0.41|ENSG00000005483|chr7:105106538-105106538|A/-|frameshift_variant KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7214050292969 2 478.768583 955.522613 NaN NaN NaN NaN NaN NaN NaN 157.17 1 152.38 151.88 152.88 -4.7885 0 0 0 0.12288 1 31255 31255 34.102 0 1 42506 993 28257 28274 41889 41889 0.043072319748034715 SLPDSGVVEY 10 Unmodified _SLPDSGVVEY_ 0 0 0 nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6 nc|ENSG00000138767|Q96LI5-2|CNOT6L nc|ENSG00000138767|Q96LI5-2|CNOT6L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27392578125 2 533.258579 1064.50261 0.44098 0.00023516 1.6961 0.00090444 2.137 0.0011396 533.2591156414857 47.827 0.35159 47.827 47.577 47.929 0 17 9 2 0 0 0 0.66352 1 9023 9023 25.399 6.1423 1 700090 42507 4209 28258 28275 41890 41890 -0.02706563755782554 SLPEDELI 8 Unmodified _SLPEDELI_ 0 0 0 nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5 nc|ENSG00000111731|Q86YS7|C2CD5 nc|ENSG00000111731|Q86YS7|C2CD5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23876953125 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 105.39 1 101.13 100.63 101.63 -4.2638 0 0 0 0.19492 1 20740 20740 26.341 0 1 42508 2643 28259 28276 41891 41891 -0.0009733381323258072 SLPEQLTR 8 Unmodified _SLPEQLTR_ 0 0 0 REV__ENSG00000181036|ENST00000368106|FCRL6 REV__ENSG00000181036|ENST00000368106|FCRL6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.16644287109375 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 22.725 1 22.725 22.225 23.225 0 0 0 0 0.21486 1 3854 3854 0.45834 0 1 + 42509 18712 28260 28277 41892 41892 0.03988883409124355 SLPEQLTR 8 Unmodified _SLPEQLTR_ 0 0 0 REV__ENSG00000181036|ENST00000368106|FCRL6 REV__ENSG00000181036|ENST00000368106|FCRL6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.2894592285156 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 5.8771 1 5.2508 4.7508 5.7508 -0.62626 0 0 0 0.21486 1 369 369 0.45834 0 1 + 42510 18712 28260 28277 41893 41893 0.03988883409124355 SLPEQLTR 8 Unmodified _SLPEQLTR_ 0 0 0 REV__ENSG00000181036|ENST00000368106|FCRL6 REV__ENSG00000181036|ENST00000368106|FCRL6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.28912353515625 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 6.9594 1 6.2803 5.7803 6.7803 -0.67913 0 0 0 0.21486 1 581 581 0.45834 0 1 + 42511 18712 28260 28277 41894 41894 0.03988883409124355 SLPEQLTR 8 Unmodified _SLPEQLTR_ 0 0 0 REV__ENSG00000181036|ENST00000368106|FCRL6 REV__ENSG00000181036|ENST00000368106|FCRL6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.3258056640625 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 7.066 1 6.3869 5.8869 6.8869 -0.67913 0 0 0 0.21486 1 602 602 0.45834 0 1 + 42512 18712 28260 28277 41895 41895 0.03988883409124355 SLPEQLTR 8 Unmodified _SLPEQLTR_ 0 0 0 REV__ENSG00000181036|ENST00000368106|FCRL6 REV__ENSG00000181036|ENST00000368106|FCRL6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1011657714844 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 134.7 1 130.06 129.56 130.56 -4.6399 0 0 0 0.21486 1 26565 26565 0.40072 0 1 + 42513 18712 28260 28277 41896 41896 0.03988883409124355 SLPFHGCL 8 Unmodified _SLPFHGCL_ 0 0 0 nc|nan|Q5W0N0-2|C9orf57;ENSG00000204669|ENST00000651200|C9orf57;nc|nan|Q5W0N0|C9orf57 nc|nan|Q5W0N0-2|C9orf57 nc|nan|Q5W0N0-2|C9orf57 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.216552734375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 137.21 1 132.29 131.79 132.79 -4.9216 0 0 0 0.21486 1 26375 26375 9.3474 2.9933 1 42514 7603 28261 28278 41897 41897 -0.019854982088986617 SLPGEDSLT 9 Unmodified _SLPGEDSLT_ 0 0 0 ENST00000319136.8_1_22:36649172-36649925:+|nuORF ENST00000319136.8_1_22:36649172-36649925:+|nuORF ENST00000319136.8_1_22:36649172-36649925:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.224853515625 3 306.818674 917.434192 -0.93156 -0.00028582 0.2177 6.6796E-05 -0.71386 -0.00021902 306.8190276774881 8.2128 0.34564 7.5337 7.2624 7.608 -0.67913 12 9 2 0 0 0 0.88413 1 802 802 0.23584 0 1 111880 42515 8698 28262 28279 41898 41898 -0.027828083356666866 SLPGMDFPDPQ 11 Unmodified _SLPGMDFPDPQ_ 0 0 0 ENSG00000178522|ENST00000322937|AMBN;nc|ENSG00000178522|Q9NP70-2|AMBN ENSG00000178522|ENST00000322937|AMBN ENSG00000178522|ENST00000322937|AMBN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.29345703125 2 602.271164 1202.52777 NaN NaN NaN NaN NaN NaN NaN 166.85 1 161.9 161.4 162.4 -4.948 0 0 0 0.22501 1 32756 32756 12.241 2.1667 1 42516 6582 28263 28280 41899 41899 -0.06538832224896396 SLPGMSRGKSM 11 Unmodified _SLPGMSRGKSM_ 0 0 0 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3374633789062 2 575.789001 1149.56345 0.0057896 3.3336E-06 -0.43258 -0.00024908 -0.42679 -0.00024574 575.7894366071829 65.316 1.4242 62.269 61.385 62.809 -3.047 53 41 2 0 0 0 0.59903 2 12650 12650;12662 18.146 18.146 1 3646300 42517 1424 28264 28281 41900;41901 41900 -0.0053507324885231355 SLPGRILLLVV 11 Unmodified _SLPGRILLLVV_ 0 0 0 REV__ENST00000216185.6_1_22:36863607-36863694:-|nuORF REV__ENST00000216185.6_1_22:36863607-36863694:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2561645507812 2 590.394816 1178.77508 NaN NaN NaN NaN NaN NaN NaN 156.97 1 156.97 156.47 157.47 0 0 0 0 0.23324 1 31498 31498 5.7319 2.9967 1 + 42518 20010 28265 28282 41902 41902 0.19284289776032892 SLPGRILLLVV 11 Unmodified _SLPGRILLLVV_ 0 0 0 REV__ENST00000216185.6_1_22:36863607-36863694:-|nuORF REV__ENST00000216185.6_1_22:36863607-36863694:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2662353515625 2 590.394816 1178.77508 NaN NaN NaN NaN NaN NaN NaN 158.16 1 158.16 157.66 158.66 0 0 0 0 0.23324 1 31753 31753 5.7319 4.0792 1 + 42519 20010 28265 28282 41903 41903 0.19284289776032892 SLPGRILLLVV 11 Unmodified _SLPGRILLLVV_ 0 0 0 REV__ENST00000216185.6_1_22:36863607-36863694:-|nuORF REV__ENST00000216185.6_1_22:36863607-36863694:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.248779296875 2 590.394816 1178.77508 NaN NaN NaN NaN NaN NaN NaN 161.97 1 161.97 161.47 162.47 0 0 0 0 0.23324 1 32538 32538 5.7319 3.8876 1 + 42520 20010 28265 28282 41904 41904 0.19284289776032892 SLPGSSPLTA 10 Unmodified _SLPGSSPLTA_ 0 0 0 OSBPL10|p.G266S|1|0.2|ENSG00000144645|chr3:31748054-31748054|C/T|missense_variant OSBPL10|p.G266S|1|0.2|ENSG00000144645|chr3:31748054-31748054|C/T|missense_variant OSBPL10|p.G266S|1|0.2|ENSG00000144645|chr3:31748054-31748054|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.4992065429688 1 929.493838 928.486562 0.12466 0.00011587 0.22175 0.00020611 0.3464 0.00032198 929.4938198797588 76.787 0.65604 73.371 73.075 73.732 -3.4151 29 18 2 0 0 0 0.23765 1 14958 14958 41.84 5.7126 1 6185400 42521 12739 28266 28283 41905 41905 0.019457747979458873 SLPHSVGIAY 10 Unmodified _SLPHSVGIAY_ 0 0 0 REV__nc|ENSG00000168906|P31153-2|MAT2A REV__nc|ENSG00000168906|P31153-2|MAT2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.277587890625 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 128.59 1 123.96 123.46 124.46 -4.6292 0 0 0 0.22588 1 25351 25351 10.824 2.9138 1 + 42522 18063 28267 28284 41906 41906 0.025174564432290936 SLPHSVGIAY 10 Unmodified _SLPHSVGIAY_ 0 0 0 REV__nc|ENSG00000168906|P31153-2|MAT2A REV__nc|ENSG00000168906|P31153-2|MAT2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2796630859375 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 119.35 1 114.88 114.38 115.38 -4.467 0 0 0 0.22588 1 22973 22973 10.824 0 1 + 42523 18063 28267 28284 41907 41907 0.025174564432290936 SLPKGVVEV 9 Unmodified _SLPKGVVEV_ 0 0 0 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2527770996094 2 464.279118 926.543683 0.28604 0.0001328 -0.48294 -0.00022422 -0.1969 -9.1417E-05 464.27887172088896 91.027 2.6684 86.932 85.903 88.572 -4.0946 245 76 5 0 0 0 0.21532 1 17465 17465 36.506 7.4246 1 200030000 42524 4778 28268 28285 41908 41908 0.07747242074322003 SLPKLELTVKQ 11 Unmodified _SLPKLELTVKQ_ 0 0 0 REV__ENST00000554157.5_1_14:20763469-20774096:-|nuORF REV__ENST00000554157.5_1_14:20763469-20774096:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 420.5969543457031 3 419.258856 1254.75474 0.47094 0.00019745 0.54435 0.00022822 1.0153 0.00042567 419.25910601162474 122.76 1.5682 118.03 117.5 119.07 -4.731 148 44 5 0 0 0 0.65389 1 23660 23660 0.172 0.17062 1 163630000 + 42525 16323 28269 28286 41909 41909 0.13755074325536043 SLPLHTSTIL 10 Unmodified _SLPLHTSTIL_ 0 0 0 ENST00000338110.9_1_16:30075281-30075485:+|nuORF ENST00000338110.9_1_16:30075281-30075485:+|nuORF ENST00000338110.9_1_16:30075281-30075485:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2745361328125 2 541.316232 1080.61791 NaN NaN NaN NaN NaN NaN NaN 153.03 1 153.03 152.53 153.53 0 0 0 0 0.22583 1 30656 30656 13.906 1.3745 1 42526 8825 28270 28287 41910 41910 0.08082585165857381 SLPLKNPFY 9 Unmodified _SLPLKNPFY_ 0 0 0 NKX2-2|p.D124Tfs*60|1|0.43|ENSG00000125820|chr20:21512375-21512375|C/-|frameshift_variant;ENSG00000125820|ENST00000377142|NKX2-2 NKX2-2|p.D124Tfs*60|1|0.43|ENSG00000125820|chr20:21512375-21512375|C/-|frameshift_variant NKX2-2|p.D124Tfs*60|1|0.43|ENSG00000125820|chr20:21512375-21512375|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20166015625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 82.046 1 82.046 81.546 82.546 0 0 0 0 0.23508 1 15982 15982 7.609 0.57187 1 42527 3394 28271 28288 41911 41911 0.05019217482708882 SLPLKNPFY 9 Unmodified _SLPLKNPFY_ 0 0 0 NKX2-2|p.D124Tfs*60|1|0.43|ENSG00000125820|chr20:21512375-21512375|C/-|frameshift_variant;ENSG00000125820|ENST00000377142|NKX2-2 NKX2-2|p.D124Tfs*60|1|0.43|ENSG00000125820|chr20:21512375-21512375|C/-|frameshift_variant NKX2-2|p.D124Tfs*60|1|0.43|ENSG00000125820|chr20:21512375-21512375|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20123291015625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 85.83 1 82.101 81.601 82.601 -3.7289 0 0 0 0.23508 1 16403 16403 4.5289 0.33936 1 42528 3394 28271 28288 41912 41912 0.05019217482708882 SLPLLMVYF 9 Unmodified _SLPLLMVYF_ 0 0 0 ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;DPAGT1|p.T234Hfs*116|1|0.35|ENSG00000172269|chr11:119098432-119098433|-/A|frameshift_variant;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000533687.1_1_11:118971334-118971544:-|nuORF ENST00000414373.5_1_11:118967985-118971732:-|nuORF ENST00000414373.5_1_11:118967985-118971732:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2821044921875 2 541.801371 1081.58819 0.6981 0.00037823 -1.0441 -0.00056569 -0.346 -0.00018746 541.8014955499438 111.18 0.20718 106.95 106.87 107.08 -4.2289 6 5 2 0 0 0 0.86532 1 21417 21417 8.5933 0 1 1646000 42529 882 28272 28289 41913 41913 0.05065929896159105 SLPLTELKVGF 11 Unmodified _SLPLTELKVGF_ 0 0 0 REV__nc|ENSG00000275410|P35680-3|HNF1B REV__nc|ENSG00000275410|P35680-3|HNF1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2981567382812 2 602.352814 1202.69108 NaN NaN NaN NaN NaN NaN NaN 135.71 1 130.88 130.38 131.38 -4.8307 0 0 0 0.23018 1 26129 26129 8.1555 2.4237 1 + 42530 19934 28273 28290 41914 41914 0.09783713888441525 SLPPFSKAP 9 Unmodified _SLPPFSKAP_ 0 0 0 nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.17999267578125 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 83.718 1 80.11 79.61 80.61 -3.6079 0 0 0 0.23508 1 16368 16368 2.7352 0.23671 1 42531 3330 28274 28291 41915 41915 0.043909729028428046 SLPPFSKAP 9 Unmodified _SLPPFSKAP_ 0 0 0 nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1802673339844 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 95.212 1 91.162 90.662 91.662 -4.0496 0 0 0 0.23508 1 18662 18662 2.4985 1.0166 1 42532 3330 28274 28291 41916 41916 0.043909729028428046 SLPPFSKAP 9 Unmodified _SLPPFSKAP_ 0 0 0 nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.18048095703125 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 83.575 1 79.876 79.376 80.376 -3.6985 0 0 0 0.23508 1 15956 15956 5.2969 0.39987 1 42533 3330 28274 28291 41917 41917 0.043909729028428046 SLPPFSKAP 9 Unmodified _SLPPFSKAP_ 0 0 0 nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1963195800781 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 97.712 1 93.792 93.292 94.292 -3.9194 0 0 0 0.23508 1 18753 18753 4.897 1.3005 1 42534 3330 28274 28291 41918 41918 0.043909729028428046 SLPPKKKRKY 10 Unmodified _SLPPKKKRKY_ 0 0 0 REV__ENSG00000146576|ENST00000344417|INTS15 REV__ENSG00000146576|ENST00000344417|INTS15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7568359375 2 622.895515 1243.77648 NaN NaN NaN NaN NaN NaN NaN 130.28 1 125.64 125.14 126.14 -4.6359 0 0 0 0.22588 1 25675 25675 6.7232 2.3939 1 + 42535 16894 28275 28292 41919 41919 0.16433923864792632 SLPPLLFSS 9 Unmodified _SLPPLLFSS_ 0 0 0 REV__ENST00000439290.5_1_9:131833323-131833761:+|nuORF REV__ENST00000439290.5_1_9:131833323-131833761:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2528076171875 2 480.773668 959.532783 0.18441 8.866E-05 0.12255 5.892E-05 0.30696 0.00014758 480.77353175966124 156.17 0.5954 150.89 150.54 151.14 -5.2854 25 16 2 0 0 0 0.42844 1 30327 30327 24.021 2.2739 1 2086600 + 42536 21693 28276 28293 41920 41920 0.05139839700052562 SLPQGSDCCW 10 Unmodified _SLPQGSDCCW_ 0 0 0 ENST00000336095.10_1_20:3914522-3914756:-|nuORF ENST00000336095.10_1_20:3914522-3914756:-|nuORF ENST00000336095.10_1_20:3914522-3914756:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7900390625 2 548.215334 1094.41612 -0.091038 -4.9908E-05 1.0177 0.00055794 0.9267 0.00050803 548.2159635556609 108.52 1.3064 104.07 103.61 104.91 -4.4518 88 37 3 0 0 0 0.85223 1 20870 20870 8.7454 0 1 9460400 42537 8804 28277 28294 41921 41921 -0.12731589853683545 SLPRLLPAL 9 Unmodified _SLPRLLPAL_ 0 0 0 ENST00000565695.2_1_6:101329383-101329548:+|nuORF ENST00000565695.2_1_6:101329383-101329548:+|nuORF ENST00000565695.2_1_6:101329383-101329548:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27105712890625 2 490.318577 978.622602 NaN NaN NaN NaN NaN NaN NaN 159.84 1 154.59 154.09 155.09 -5.2526 0 0 0 0.23508 1 31015 31015 7.9102 0 1 42538 11360 28278 28295 41922 41922 0.1324351409925839 SLPRQIGC 8 Unmodified _SLPRQIGC_ 0 0 0 nc|ENSG00000135502|Q8NG04-2|SLC26A10P;nc|ENSG00000135502|Q8NG04|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2357177734375 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 65.657 1 65.657 65.157 66.157 0 0 0 0 0.21486 1 12666 12666 9.3474 0 1 42539 12341 28279 28296 41923 41923 0.012492891941064954 SLPRQIGC 8 Unmodified _SLPRQIGC_ 0 0 0 nc|ENSG00000135502|Q8NG04-2|SLC26A10P;nc|ENSG00000135502|Q8NG04|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2352294921875 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 66.194 1 66.194 65.694 66.694 0 0 0 0 0.21486 1 12781 12781 9.3474 0 1 42540 12341 28279 28296 41924 41924 0.012492891941064954 SLPRQIGC 8 Unmodified _SLPRQIGC_ 0 0 0 nc|ENSG00000135502|Q8NG04-2|SLC26A10P;nc|ENSG00000135502|Q8NG04|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2163391113281 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 69.035 1 65.645 65.145 66.145 -3.3903 0 0 0 0.21486 1 13046 13046 9.3474 0 1 42541 12341 28279 28296 41925 41925 0.012492891941064954 SLPTGSSSHTL 11 Unmodified _SLPTGSSSHTL_ 0 0 0 REV__ENST00000418945.1_1_6:99873046-99873130:+|nuORF REV__ENST00000418945.1_1_6:99873046-99873130:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7788696289062 2 543.774928 1085.5353 0.4609 0.00025062 2.8108 0.0015284 3.2717 0.001779 543.7770991617006 118.12 0.57185 113.51 113.21 113.78 -4.6106 21 15 2 0 0 0 0.42348 1 22710 22710 27.629 2.2295 1 1839300 + 42542 21488 28280 28297 41926 41926 -0.004043566329301029 SLPTKRRW 8 Unmodified _SLPTKRRW_ 0 0 0 REV__ENST00000381312.5_1_10:1230972-1279682:-|nuORF REV__ENST00000381312.5_1_10:1230972-1279682:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2814331054688 2 522.309075 1042.6036 NaN NaN NaN NaN NaN NaN NaN 163.74 1 158.67 158.17 159.17 -5.0648 0 0 0 0.21486 1 31880 31880 9.3474 0.75416 1 + 42543 21166 28281 28298 41927 41927 0.08399977528233649 SLPTTLFAA 9 Unmodified _SLPTTLFAA_ 0 0 0 REV__ENST00000360415.7_1_7:65617938-65618154:+|nuORF REV__ENST00000360415.7_1_7:65617938-65618154:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2403869628906 2 460.758018 919.501483 0.099587 4.5886E-05 0.4539 0.00020914 0.55348 0.00025502 460.75819321993106 97.232 0.78439 92.998 92.573 93.358 -4.2348 30 22 2 0 0 0 0.72864 1 18604 18604 23.148 0 1 2086800 + 42544 20866 28282 28299 41928 41928 0.03851266665958519 SLPVFPFR 8 Unmodified _SLPVFPFR_ 0 0 0 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7769775390625 2 481.776545 961.538538 0.021333 1.0278E-05 1.0726 0.00051674 1.0939 0.00052702 481.7769687252516 32.183 0.38455 32.183 31.978 32.363 0 14 10 2 0 0 0 8448 1 5820 5820 3.2813 3.2813 1 947030 42545 828 28283 28300 41929 41929 0.056229830023767136 SLPWDSGAP 9 Unmodified _SLPWDSGAP_ 0 0 0 REV__ENST00000573366.5_1_17:4870348-4870435:-|nuORF REV__ENST00000573366.5_1_17:4870348-4870435:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2488098144531 2 465.2218 928.429047 0.51056 0.00023752 -0.9702 -0.00045136 -0.45964 -0.00021384 465.22124678101346 119.5 0.88535 114.85 114.42 115.31 -4.645 41 24 2 0 0 0 0.37087 1 22973 22973 0.37959 0 1 2141400 + 42546 23185 28284 28301 41930 41930 -0.0380306740761398 SLQDEIQRV 9 Unmodified _SLQDEIQRV_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7921752929688 2 544.290745 1086.56694 0.14379 7.8263E-05 -0.032343 -1.7604E-05 0.11145 6.0659E-05 544.2906415856544 91.688 0.76921 91.688 91.323 92.092 0 60 21 4 0 0 0 0.029993 1 17897 17897 106.94 50.763 1 15357000 42547 1353 28285 28302 41931 41931 0.027116361209891693 SLQDEIQRV 9 Unmodified _SLQDEIQRV_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7698974609375 2 544.290745 1086.56694 0.14899 8.1095E-05 -0.0052956 -2.8823E-06 0.1437 7.8212E-05 544.2906903850404 95.787 0.74831 91.596 91.21 91.958 -4.1911 54 21 3 0 0 0 0.0034036 1 18309 18309 93.938 36.216 1 15469000 42548 1353 28285 28302 41932 41932 0.027116361209891693 SLQDEIQRV 9 Unmodified _SLQDEIQRV_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7847290039062 2 544.290745 1086.56694 0.075317 4.0994E-05 -0.019963 -1.0866E-05 0.055354 3.0129E-05 544.2907241149097 95.55 0.8 91.669 91.228 92.028 -3.881 65 22 4 0 0 0 0.054822 1 18310 18310 86.332 36.399 1 14144000 42549 1353 28285 28302 41933 41933 0.027116361209891693 SLQDEIQRV 9 Unmodified _SLQDEIQRV_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 544.290745 1086.56694 0.26098 0.00014205 -0.29077 -0.00015827 -0.029793 -1.6216E-05 544.2905831883926 95.619 0.75714 91.569 91.168 91.925 -4.0496 -0.061549 -0.00022047 NaN 93.938 55 21 3 NaN NaN NaN NaN 0 NaN NaN 0 13742000 42550 1353 28285 28302 0.027116361209891693 SLQDIDSRL 9 Unmodified _SLQDIDSRL_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6978759765625 2 523.77747 1045.54039 -0.043863 -2.2974E-05 0.22508 0.00011789 0.18121 9.4916E-05 523.7776651900937 94.708 0.55965 94.708 94.379 94.938 0 23 15 2 0 0 0 0.19171 1 18570 18570 38.176 2.0485 1 1900300 42551 6863 28286 28303 41934 41934 0.019439472296653548 SLQDIDSRL 9 Unmodified _SLQDIDSRL_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.77747 1045.54039 -0.33602 -0.000176 0.67853 0.0003554 0.34251 0.0001794 523.7780151629022 98.798 0.49626 94.529 94.261 94.757 -4.2692 -0.023236 0.00019433 NaN 38.176 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2277600 42552 6863 28286 28303 0.019439472296653548 SLQDVIDRV 9 Unmodified _SLQDVIDRV_ 0 0 0 nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant nc|ENSG00000183495|Q96L91-3|EP400 nc|ENSG00000183495|Q96L91-3|EP400 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2821044921875 2 522.787838 1043.56112 -0.19605 -0.00010249 0.68917 0.00036029 0.49313 0.0002578 522.7880940511196 135.71 0.51945 131.07 130.77 131.29 -4.6399 20 14 2 0 0 0 0.6202 1 26763 26763 33.445 4.3633 1 2062500 42553 12505 28287 28304 41935 41935 0.04108537609317864 SLQDVIDRV 9 Unmodified _SLQDVIDRV_ 0 0 0 nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant nc|ENSG00000183495|Q96L91-3|EP400 nc|ENSG00000183495|Q96L91-3|EP400 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2754516601562 2 522.787838 1043.56112 -0.60221 -0.00031483 1.4895 0.0007787 0.88731 0.00046388 522.7886492302974 136.07 0.5952 131.17 130.82 131.41 -4.8951 24 16 2 0 0 0 0.74927 1 26137 26137 23.79 4.5328 1 2632100 42554 12505 28287 28304 41936 41936 0.04108537609317864 SLQDVIFK 8 Unmodified _SLQDVIFK_ 0 0 0 ENSG00000087502|ENST00000360150|ERGIC2 ENSG00000087502|ENST00000360150|ERGIC2 ENSG00000087502|ENST00000360150|ERGIC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1829528808594 3 317.183287 948.528032 NaN NaN NaN NaN NaN NaN NaN 41.238 1 38.698 38.198 39.198 -2.5398 0 0 0 0.21486 1 7404 7404 3.5965 0 1 42555 1719 28288 28305 41937 41937 0.05170955557275647 SLQDYMQRCT 10 Unmodified _SLQDYMQRCT_ 0 0 0 ENSG00000118898|ENST00000345988|PPL;PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant;PPL|p.T455Hfs*4|1|0.5|ENSG00000118898|chr16:4894498-4894499|-/G|frameshift_variant;PPL|p.T455Qfs*37|2|0.3|ENSG00000118898|chr16:4894499-4894499|G/-|frameshift_variant;PPL|p.Q990Rfs*31|1|0.12|ENSG00000118898|chr16:4885688-4885688|C/-|frameshift_variant ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7710571289062 2 622.773548 1243.53254 NaN NaN NaN NaN NaN NaN NaN 48.878 1 45.88 45.38 46.38 -2.999 0 0 0 2.8426 1 8928 8928 3.8763 0 1 42556 3052 28289 28306 41938 41938 -0.07948271353780001 SLQELPDQY 9 Unmodified _SLQELPDQY_ 0 0 0 REV__ENST00000476202.5_3_3:145924377-145968784:-|nuORF REV__ENST00000476202.5_3_3:145924377-145968784:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.787353515625 2 546.764029 1091.5135 0.06555 3.584E-05 -0.81734 -0.00044689 -0.75179 -0.00041105 546.7639547669477 51.094 0.49438 48.048 47.768 48.262 -3.0453 40 13 4 0 0 0 0.55979 1 9351 9351 15.847 1.4418 1 4865100 + 42557 21877 28290 28307 41939 41939 -0.02859161381525155 SLQEPTLQ 8 Unmodified _SLQEPTLQ_ 0 0 0 REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2418212890625 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 97.299 1 93.064 92.564 93.564 -4.2348 0 0 0 0.1328 1 18584 18584 39.957 0 1 + 42558 14103 28291 28308 41940 41940 0.010254882809135779 SLQEPTLQ 8 Unmodified _SLQEPTLQ_ 0 0 0 REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2341613769531 2 458.242732 914.470912 -0.029793 -1.3653E-05 0.15914 7.2924E-05 0.12934 5.9271E-05 458.2427614944362 95.916 1.447 92.035 91.579 93.026 -3.881 86 41 3 0 0 0 0.25515 1 18588 18588 39.957 3.9131 1 5856900 + 42559 14103 28291 28308 41941 41941 0.010254882809135779 SLQFLAVQFV 10 Unmodified _SLQFLAVQFV_ 0 0 0 REV__nc|ENSG00000143469|Q8NB59-3|SYT14 REV__nc|ENSG00000143469|Q8NB59-3|SYT14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3194580078125 2 576.326599 1150.63865 0.058975 3.3989E-05 0.18524 0.00010676 0.24422 0.00014075 576.3270926484349 141.96 0.21452 137.31 137.13 137.35 -4.6493 7 5 2 0 0 0 0.71097 1 28032 28032 10.074 0 1 7641600 + 42560 16731 28292 28309 41942 41942 0.06935175545481798 SLQGARNQ 8 Unmodified _SLQGARNQ_ 0 0 0 REV__ENST00000397863.5_1_18:74726690-74726957:-|nuORF REV__ENST00000397863.5_1_18:74726690-74726957:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.228515625 2 437.230491 872.446428 NaN NaN NaN NaN NaN NaN NaN 73.121 1 69.81 69.31 70.31 -3.3107 0 0 0 0.22692 1 14255 14255 0.25148 0.12861 1 + 42561 21314 28293 28310 41943 41943 0.00510272918040755 SLQGLTGTP 9 Unmodified _SLQGLTGTP_ 0 0 0 ENSG00000159556|ENST00000290759|ISL2 ENSG00000159556|ENST00000290759|ISL2 ENSG00000159556|ENST00000290759|ISL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2288818359375 2 437.23745 872.460347 -0.11444 -5.0038E-05 -0.19368 -8.4683E-05 -0.30812 -0.00013472 437.23734473216797 85.896 0.772 82.167 81.853 82.625 -3.7289 40 21 3 0 0 0 0.36931 1 16455 16455 27.629 0.74515 1 2468100 42562 5211 28294 28311 41944 41944 0.019015056264720442 SLQGNFLH 8 Unmodified _SLQGNFLH_ 0 0 0 STAB2|p.P2450Lfs*4|1|0.51|ENSG00000136011|chr12:103761396-103761396|C/-|frameshift_variant;ENSG00000136011|ENST00000388887|STAB2;STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant;STAB2|p.F1633Lfs*22|1|0.36|ENSG00000136011|chr12:103727310-103727310|T/-|frameshift_variant;STAB2|p.R1889Pfs*3|1|0.41|ENSG00000136011|chr12:103737740-103737741|-/G|frameshift_variant STAB2|p.P2450Lfs*4|1|0.51|ENSG00000136011|chr12:103761396-103761396|C/-|frameshift_variant STAB2|p.P2450Lfs*4|1|0.51|ENSG00000136011|chr12:103761396-103761396|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2374267578125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 152.71 1 147.95 147.45 148.45 -4.762 0 0 0 0.21452 1 30343 30343 13.508 0 1 42563 3976 28295 28312 41945 41945 0.00036345066178000707 SLQHLPKESL 10 Unmodified _SLQHLPKESL_ 0 0 0 REV__ENST00000488380.5_1_3:52515663-52515903:+|nuORF REV__ENST00000488380.5_1_3:52515663-52515903:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3251342773438 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 143.31 1 138.29 137.79 138.79 -5.0261 0 0 0 0.22588 1 27629 27629 11.495 2.7493 1 + 42564 22275 28296 28313 41946 41946 0.06533086051808823 SLQHLPKESL 10 Unmodified _SLQHLPKESL_ 0 0 0 REV__ENST00000488380.5_1_3:52515663-52515903:+|nuORF REV__ENST00000488380.5_1_3:52515663-52515903:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3314819335938 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 143.38 1 138.35 137.85 138.85 -5.0261 0 0 0 0.22579 1 27641 27641 14.405 2.1647 1 + 42565 22275 28296 28313 41947 41947 0.06533086051808823 SLQHSLHLDWH 11 Unmodified _SLQHSLHLDWH_ 0 0 0 REV__ENST00000259526.3_1_8:120435239-120435314:+|nuORF REV__ENST00000259526.3_1_8:120435239-120435314:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.228515625 3 458.230071 1371.66838 NaN NaN NaN NaN NaN NaN NaN 138.18 1 133.25 132.75 133.75 -4.9216 0 0 0 0.22031 1 26568 26568 0.2986 0 1 + 42566 20153 28297 28314 41948 41948 -0.002584924564416724 SLQILRFRVK 10 Unmodified _SLQILRFRVK_ 0 0 0 ENST00000375946.8_1_10:27443914-27444118:+|nuORF ENST00000375946.8_1_10:27443914-27444118:+|nuORF ENST00000375946.8_1_10:27443914-27444118:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.760009765625 2 630.400964 1258.78738 1.0709 0.00067508 2.1312 0.0013435 3.202 0.0020186 630.4021491634733 152.24 0.71558 147.48 147.17 147.88 -4.7523 25 19 2 0 0 0 1.1094 1 30213 30213 0.51642 0.40538 1 3608900 42567 9242 28298 28315 41949 41949 0.16833326239066082 SLQILRFRVK 10 Unmodified _SLQILRFRVK_ 0 0 0 ENST00000375946.8_1_10:27443914-27444118:+|nuORF ENST00000375946.8_1_10:27443914-27444118:+|nuORF ENST00000375946.8_1_10:27443914-27444118:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7639770507812 2 630.400964 1258.78738 0.38106 0.00024022 2.1935 0.0013828 2.5746 0.001623 630.4013994924251 152.77 0.52499 147.5 147.29 147.81 -5.2669 20 14 2 0 0 0 1.1187 1 29608 29608 0.51642 0.40538 1 2431100 42568 9242 28298 28315 41950 41950 0.16833326239066082 SLQILRFRVK 10 Unmodified _SLQILRFRVK_ 0 0 0 ENST00000375946.8_1_10:27443914-27444118:+|nuORF ENST00000375946.8_1_10:27443914-27444118:+|nuORF ENST00000375946.8_1_10:27443914-27444118:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.775390625 2 630.400964 1258.78738 0.61424 0.00038722 2.7125 0.00171 3.3268 0.0020972 630.4023443734716 152.67 0.60196 147.45 147.19 147.8 -5.214 24 16 2 0 0 0 0.72988 1 29553 29553 8.1555 2.4237 1 2461400 42569 9242 28298 28315 41951 41951 0.16833326239066082 SLQKILHQL 9 Unmodified _SLQKILHQL_ 0 0 0 ENST00000399022.8_1_18:33613695-33613761:-|nuORF ENST00000399022.8_1_18:33613695-33613761:-|nuORF ENST00000399022.8_1_18:33613695-33613761:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20159912109375 3 360.557236 1078.64988 -0.31551 -0.00011376 0.57336 0.00020673 0.25784 9.2968E-05 360.8918126770719 114.49 0.60356 110.02 109.76 110.36 -4.4726 22 16 2 0 0 0 0.82357 1 22593 22593 15.248 7.6395 1 1695000 42570 9490 28299 28316 41952 41952 0.11369997639667417 SLQKKLLL 8 Unmodified _SLQKKLLL_ 0 0 0 REV__P2RY13|p.V235Yfs*81|3|0.39|ENSG00000181631|chr3:151328354-151328354|T/-|frameshift_variant REV__P2RY13|p.V235Yfs*81|3|0.39|ENSG00000181631|chr3:151328354-151328354|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.8861999511719 3 314.883061 941.627353 NaN NaN NaN NaN NaN NaN NaN 9.5949 1 8.8006 8.3006 9.3006 -0.79424 0 0 0 0.21486 1 1122 1122 0.45834 0 1 + 42571 24421 28300 28317 41953 41953 0.15420398242054034 SLQKKLLL 8 Unmodified _SLQKKLLL_ 0 0 0 REV__P2RY13|p.V235Yfs*81|3|0.39|ENSG00000181631|chr3:151328354-151328354|T/-|frameshift_variant REV__P2RY13|p.V235Yfs*81|3|0.39|ENSG00000181631|chr3:151328354-151328354|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.8824768066406 3 314.883061 941.627353 NaN NaN NaN NaN NaN NaN NaN 9.6435 1 8.8492 8.3492 9.3492 -0.79424 0 0 0 0.21486 1 1132 1132 0.45834 0 1 + 42572 24421 28300 28317 41954 41954 0.15420398242054034 SLQKKLQHV 9 Unmodified _SLQKKLQHV_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000196873|ENST00000360171|ZNG1C;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000460896.1_9:42685444-42714533:+|nuORF;ENST00000487575.6_1_9:121469-150531:-|nuORF;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000479583.5_1_2:114228547-114253317:+|nuORF;ENST00000486387.2_9:42689759-42714533:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000456188.5_1_2:114214762-114253317:+|nuORF;ENST00000382436.3_9:42674366-42714533:+|nuORF;ENSG00000215126|ENST00000377391|ZNG1F;chr9:65301476-65306364|257|12.42|0.18|6.15|-|1|ZNG1DP,None|1;chr9:65715164-65720041|261|13.71|0.25|5.8|+|1|None,ZNG1E|1;ENST00000468763.2_9:69204965-69234056:-|nuORF;ENST00000468061.1_9:69204965-69229730:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.1941833496094 3 360.888986 1079.64513 -0.10141 -3.6598E-05 -0.34341 -0.00012393 -0.44482 -0.00016053 360.8890275981548 22.624 0.31779 21.171 20.978 21.296 -1.4535 15 8 2 0 0 0 0.25976 1 3599 3599 17.113 8.9574 1 691780 42573 4027 28301 28318 41955 41955 0.10849113496897189 SLQKKLQHV 9 Unmodified _SLQKKLQHV_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000196873|ENST00000360171|ZNG1C;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000460896.1_9:42685444-42714533:+|nuORF;ENST00000487575.6_1_9:121469-150531:-|nuORF;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000479583.5_1_2:114228547-114253317:+|nuORF;ENST00000486387.2_9:42689759-42714533:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000456188.5_1_2:114214762-114253317:+|nuORF;ENST00000382436.3_9:42674366-42714533:+|nuORF;ENSG00000215126|ENST00000377391|ZNG1F;chr9:65301476-65306364|257|12.42|0.18|6.15|-|1|ZNG1DP,None|1;chr9:65715164-65720041|261|13.71|0.25|5.8|+|1|None,ZNG1E|1;ENST00000468763.2_9:69204965-69234056:-|nuORF;ENST00000468061.1_9:69204965-69229730:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 360.888986 1079.64513 -0.24975 -9.0134E-05 -0.14802 -5.3417E-05 -0.39777 -0.00014355 360.8890527269491 21.105 0.27996 21.105 20.951 21.231 0 -0.049174 7.4275E-05 NaN 17.113 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 759690 42574 4027 28301 28318 0.10849113496897189 SLQKKLQHV 9 Unmodified _SLQKKLQHV_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000196873|ENST00000360171|ZNG1C;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000460896.1_9:42685444-42714533:+|nuORF;ENST00000487575.6_1_9:121469-150531:-|nuORF;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000479583.5_1_2:114228547-114253317:+|nuORF;ENST00000486387.2_9:42689759-42714533:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000456188.5_1_2:114214762-114253317:+|nuORF;ENST00000382436.3_9:42674366-42714533:+|nuORF;ENSG00000215126|ENST00000377391|ZNG1F;chr9:65301476-65306364|257|12.42|0.18|6.15|-|1|ZNG1DP,None|1;chr9:65715164-65720041|261|13.71|0.25|5.8|+|1|None,ZNG1E|1;ENST00000468763.2_9:69204965-69234056:-|nuORF;ENST00000468061.1_9:69204965-69229730:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 360.888986 1079.64513 -1.1792 -0.00042554 0.55488 0.00020025 -0.62427 -0.00022529 361.22316460494176 22.961 0.40453 21.173 20.92 21.324 -1.7886 0.018577 0.00083528 NaN 17.113 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 614860 42575 4027 28301 28318 0.10849113496897189 SLQKKRKR 8 Unmodified _SLQKKRKR_ 0 0 0 ENST00000348579.6_1_16:67428515-67429028:-|nuORF ENST00000348579.6_1_16:67428515-67429028:-|nuORF ENST00000348579.6_1_16:67428515-67429028:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2728881835938 2 522.343449 1042.67235 NaN NaN NaN NaN NaN NaN NaN 159.37 1 159.37 158.87 159.87 0 0 0 0 0.21486 1 31998 31998 2.5775 0 1 42576 8918 28302 28319 41956 41956 0.15271641827916937 SLQKQLINV 9 Unmodified _SLQKQLINV_ 0 0 0 nc|ENSG00000114473|Q9H095-2|IQCG;IQCG|p.E412Dfs*8|1|0.52|ENSG00000114473|chr3:197889675-197889676|TT/-|frameshift_variant;ENSG00000114473|ENST00000265239|IQCG nc|ENSG00000114473|Q9H095-2|IQCG nc|ENSG00000114473|Q9H095-2|IQCG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2715454101562 2 521.816399 1041.61824 0.16336 8.5242E-05 0.35407 0.00018476 0.51743 0.00027 521.8165330831043 98.462 0.3333 94.505 94.233 94.566 -3.9564 11 9 2 0 0 0 0.80264 1 18904 18904 12.241 2.8575 1 831590 42577 2792 28303 28320 41957 41957 0.09910004885705348 SLQNLYVNL 9 Unmodified _SLQNLYVNL_ 0 0 0 ENST00000521636.1_1_8:39775423-39780236:+|nuORF ENST00000521636.1_1_8:39775423-39780236:+|nuORF ENST00000521636.1_1_8:39775423-39780236:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2615356445312 2 532.292756 1062.57096 0.49968 0.00026598 -1.0052 -0.00053506 -0.50552 -0.00026908 532.2923409142331 101.09 0.66875 101.09 100.73 101.4 0 49 18 3 0 0 0 0.48644 1 19896 19896 20.454 1.0146 1 6068200 42578 10853 28304 28321 41958 41958 0.042177256146942455 SLQNLYVNL 9 Unmodified _SLQNLYVNL_ 0 0 0 ENST00000521636.1_1_8:39775423-39780236:+|nuORF ENST00000521636.1_1_8:39775423-39780236:+|nuORF ENST00000521636.1_1_8:39775423-39780236:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2745361328125 2 532.292756 1062.57096 -0.073874 -3.9323E-05 -2.9923 -0.0015928 -3.0662 -0.0016321 532.7908313149013 103.78 0.41065 99.562 99.278 99.689 -4.2183 19 11 3 0 0 0 0.52396 1 20397 20397 18.146 1.0335 1 782890 42579 10853 28304 28321 41959 41959 0.042177256146942455 SLQNYRTY 8 Unmodified _SLQNYRTY_ 0 0 0 REV__ENSG00000177971|ENST00000403490|IMP3 REV__ENSG00000177971|ENST00000403490|IMP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.280517578125 2 522.759081 1043.50361 0.55514 0.0002902 -0.66686 -0.00034861 -0.11172 -5.8404E-05 522.7586284136131 47.156 0.59873 47.156 46.836 47.435 0 43 16 3 0 0 0 0.9455 1 8859 8859 16.942 0 1 4326600 + 42580 18582 28305 28322 41960 41960 -0.01640304596230635 SLQQIDQFD 9 Unmodified _SLQQIDQFD_ 0 0 0 REV__ENST00000576487.5_1_17:7011095-7018009:-|nuORF REV__ENST00000576487.5_1_17:7011095-7018009:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7866821289062 2 547.261653 1092.50875 0.32432 0.00017749 -0.16338 -8.9411E-05 0.16094 8.8078E-05 547.2616202051753 121.54 0.6769 121.54 121.18 121.86 0 40 18 3 0 0 0 0.73268 1 23907 23907 18.146 5.1039 1 5650800 + 42581 17474 28306 28323 41961 41961 -0.03380045524272646 SLQRLNVTI 9 Unmodified _SLQRLNVTI_ 0 0 0 SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;ENST00000477049.1_1_9:135141603-135150683:-|nuORF SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2581176757812 2 522.314023 1042.61349 NaN NaN NaN NaN NaN NaN NaN 128.85 1 124.23 123.73 124.73 -4.6292 0 0 0 0.23508 1 25404 25404 6.7232 0.99131 1 42582 2419 28307 28324 41962 41962 0.0938912074293512 SLQRSGGAAP 10 Unmodified _SLQRSGGAAP_ 0 0 0 nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3 nc|ENSG00000158055|Q8TE85-4|GRHL3 nc|ENSG00000158055|Q8TE85-4|GRHL3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1705017089844 3 315.170041 942.488293 NaN NaN NaN NaN NaN NaN NaN 77.415 1 77.415 76.915 77.915 0 0 0 0 0.22588 1 15053 15053 1.9064 0.062138 1 42583 5150 28308 28325 41963 41963 0.014748286065696448 SLQRSGGAAP 10 Unmodified _SLQRSGGAAP_ 0 0 0 nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3 nc|ENSG00000158055|Q8TE85-4|GRHL3 nc|ENSG00000158055|Q8TE85-4|GRHL3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1802673339844 3 315.170041 942.488293 NaN NaN NaN NaN NaN NaN NaN 79.729 1 79.729 79.229 80.229 0 0 0 0 0.22588 1 15515 15515 1.9064 0.25375 1 42584 5150 28308 28325 41964 41964 0.014748286065696448 SLQRSGGAAP 10 Unmodified _SLQRSGGAAP_ 0 0 0 nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3 nc|ENSG00000158055|Q8TE85-4|GRHL3 nc|ENSG00000158055|Q8TE85-4|GRHL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1942443847656 3 315.170041 942.488293 NaN NaN NaN NaN NaN NaN NaN 74.659 1 71.065 70.565 71.565 -3.594 0 0 0 0.22588 1 14183 14183 2.086 0.24177 1 42585 5150 28308 28325 41965 41965 0.014748286065696448 SLQRSGGAAP 10 Unmodified _SLQRSGGAAP_ 0 0 0 nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3 nc|ENSG00000158055|Q8TE85-4|GRHL3 nc|ENSG00000158055|Q8TE85-4|GRHL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1703186035156 3 315.170041 942.488293 NaN NaN NaN NaN NaN NaN NaN 83.462 1 79.763 79.263 80.263 -3.6985 0 0 0 0.22588 1 15931 15931 1.9064 0 1 42586 5150 28308 28325 41966 41966 0.014748286065696448 SLQRSGGAAP 10 Unmodified _SLQRSGGAAP_ 0 0 0 nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3 nc|ENSG00000158055|Q8TE85-4|GRHL3 nc|ENSG00000158055|Q8TE85-4|GRHL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.19146728515625 3 315.170041 942.488293 NaN NaN NaN NaN NaN NaN NaN 88.367 1 84.617 84.117 85.117 -3.7501 0 0 0 0.22588 1 16913 16913 1.9064 0.25375 1 42587 5150 28308 28325 41967 41967 0.014748286065696448 SLQRSGGAAP 10 Unmodified _SLQRSGGAAP_ 0 0 0 nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3 nc|ENSG00000158055|Q8TE85-4|GRHL3 nc|ENSG00000158055|Q8TE85-4|GRHL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1788635253906 3 315.170041 942.488293 NaN NaN NaN NaN NaN NaN NaN 112.77 1 108.5 108 109 -4.2725 0 0 0 0.22588 1 21715 21715 1.9064 0.25375 1 42588 5150 28308 28325 41968 41968 0.014748286065696448 SLQRVFTDL 9 Unmodified _SLQRVFTDL_ 0 0 0 ENST00000472045.1_1_5:131819645-131819816:-|nuORF;ENSG00000125347|ENST00000245414|IRF1 ENST00000472045.1_1_5:131819645-131819816:-|nuORF ENST00000472045.1_1_5:131819645-131819816:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2008972167969 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 118.31 1 113.7 113.2 114.2 -4.6106 0 0 0 0.23508 1 22701 22701 10.8 2.644 1 42589 3351 28309 28326 41969 41969 0.0461712798901317 SLQSLETSV 9 Unmodified _SLQSLETSV_ 0 0 0 ENST00000484746.1_3_1:203702465-203708979:+|nuORF;ENST00000367218.7_1_1:203702465-203708979:+|nuORF;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4 ENST00000484746.1_3_1:203702465-203708979:+|nuORF ENST00000484746.1_3_1:203702465-203708979:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77239990234375 2 482.253297 962.492041 -0.30549 -0.00014733 1.0725 0.00051723 0.76702 0.0003699 482.25340512367944 106.4 0.77104 102.14 101.76 102.53 -4.2638 48 21 3 0 0 0 0.27865 1 20899 20899 41.84 17.819 1 3133200 42590 1293 28310 28327 41970 41970 0.009294535897765854 SLQSLQSTV 9 Unmodified _SLQSLQSTV_ 0 0 0 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7886047363281 2 481.761289 961.508025 0.37614 0.00018121 -1.0374 -0.00049978 -0.66127 -0.00031857 481.76127137261483 90.796 0.48637 86.735 86.393 86.879 -4.0609 22 13 3 0 0 0 0.40602 1 17310 17310 25.399 0 1 886840 42591 2045 28311 28328 41971 41971 0.02573159826670235 SLQSLQSTV 9 Unmodified _SLQSLQSTV_ 0 0 0 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 481.761289 961.508025 0.082043 3.9525E-05 -0.79863 -0.00038475 -0.71659 -0.00034522 481.7612088517271 90.52 0.42012 86.742 86.468 86.888 -3.7779 0.052449 -0.00028238 NaN 25.399 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 742960 42592 2045 28311 28328 0.02573159826670235 SLQSQQNFAK 10 Unmodified _SLQSQQNFAK_ 0 0 0 REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3378295898438 2 575.796195 1149.57784 0.18245 0.00010506 0.45384 0.00026132 0.63629 0.00036638 575.7964399111246 14.616 0.63075 14.616 14.457 15.087 0 36 17 5 0 0 0 0.66827 1 2210 2210 14.405 1.3629 1 15765000 + 42593 19201 28312 28329 41972 41972 0.009030384952893655 SLQSQQNFAK 10 Unmodified _SLQSQQNFAK_ 0 0 0 REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3155517578125 2 575.796195 1149.57784 0.18245 0.00010506 0.45384 0.00026132 0.63629 0.00036638 575.7964399111246 14.616 0.63075 14.616 14.457 15.087 0 36 17 5 0 0 0 0.66019 1 2199 2199 34.932 3.6637 1 15765000 + 42594 19201 28312 28329 41973 41973 0.009030384952893655 SLQSQQNFAK 10 Unmodified _SLQSQQNFAK_ 0 0 0 REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.314208984375 2 575.796195 1149.57784 -0.55017 -0.00031679 1.0494 0.00060425 0.49925 0.00028746 575.7968302614328 15.571 0.27418 14.355 14.204 14.479 -1.2159 22 7 4 0 0 0 0.3248 1 2412 2412 53.404 11.448 1 7601800 + 42595 19201 28312 28329 41974 41974 0.009030384952893655 SLQSQQNFAK 10 Unmodified _SLQSQQNFAK_ 0 0 0 REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3177490234375 2 575.796195 1149.57784 -0.46784 -0.00026938 0.93161 0.00053642 0.46377 0.00026704 575.7967646858577 15.573 0.40925 14.351 14.2 14.609 -1.2219 21 11 3 0 0 0 0.51622 1 2201 2201 23.79 1.0535 1 5488600 + 42596 19201 28312 28329 41975 41975 0.009030384952893655 SLQSTILGV 9 Unmodified _SLQSTILGV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2439270019531 2 459.26875 916.522947 0.24291 0.00011156 0.03111 1.4288E-05 0.27402 0.00012585 459.26871031341443 147.5 1.2837 147.5 146.94 148.23 0 97 36 4 0 0 0 0.037776 1 29502 29502 113.93 50.765 1 74709000 42597 2153 28313 28330 41976 41976 0.06134651694674176 SLQSTILGV 9 Unmodified _SLQSTILGV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.229736328125 2 459.26875 916.522947 0.031699 1.4558E-05 0.14995 6.8865E-05 0.18164 8.3424E-05 459.26876766492796 152.11 1.2847 147.36 146.88 148.17 -4.7523 105 35 4 0 0 0 0.19171 1 30193 30193 38.176 5.8701 1 116010000 42598 2153 28313 28330 41977 41977 0.06134651694674176 SLQSTILGV 9 Unmodified _SLQSTILGV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23468017578125 2 459.26875 916.522947 0.094863 4.3568E-05 0.13932 6.3986E-05 0.23418 0.00010755 459.2687699656362 152.77 1.3338 147.51 146.93 148.26 -5.2669 107 37 4 0 0 0 0.5428 1 29707 29707 12.517 7.6203 1 83275000 42599 2153 28313 28330 41978 41978 0.06134651694674176 SLQSTILGV 9 Unmodified _SLQSTILGV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.26875 916.522947 0.37165 0.00017069 -0.16443 -7.5518E-05 0.20722 9.5169E-05 459.268620678139 152.73 1.4476 147.51 146.9 148.35 -5.2209 0.039119 -0.00017506 NaN 113.93 122 40 5 NaN NaN NaN NaN 0 NaN NaN 0 89188000 42600 2153 28313 28330 0.06134651694674176 SLQSWTLECH 10 Unmodified _SLQSWTLECH_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.30029296875 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 161.63 1 161.63 161.13 162.13 0 0 0 0 0.22588 1 32464 32464 5.2969 0 1 + 42601 18334 28314 28331 41979 41979 -0.054160101307388686 SLQTSQHSPP 10 Unmodified _SLQTSQHSPP_ 0 0 0 REV__HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant REV__HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2840576171875 2 541.26727 1080.51999 -0.1809 -9.7918E-05 -0.26177 -0.00014169 -0.44267 -0.00023961 541.7688157414201 20.449 0.63242 19.064 18.811 19.444 -1.3847 25 17 2 0 0 0 0.88533 1 3137 3137 8.7454 2.5396 1 1557900 + 42602 14618 28315 28332 41980 41980 -0.017052234301445424 SLQYNKNL 8 Unmodified _SLQYNKNL_ 0 0 0 ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant;ZBTB41|p.K238Nfs*4|2|0.33|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant;ZBTB41|p.H239Tfs*24|2|0.36|ENSG00000177888|chr1:197199759-197199760|-/T|frameshift_variant;ZBTB41|p.E538*|1|0.36|ENSG00000177888|chr1:197181052-197181053|-/TA|frameshift_variant;nc|ENSG00000177888|Q5SVQ8-2|ZBTB41;ENST00000467322.1_1_1:197145142-197169603:-|nuORF;ZBTB41|p.D754Tfs*3|1|0.04|ENSG00000177888|chr1:197159829-197159830|-/AGAATGT|frameshift_variant;ZBTB41|p.D754Vfs*8|1|0.04|ENSG00000177888|chr1:197159828-197159829|-/GTTA|frameshift_variant;ENSG00000177888|ENST00000367405|ZBTB41 ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2662048339844 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 47.427 1 44.478 43.978 44.978 -2.9499 0 0 0 0.18898 1 8658 8658 28.487 0.85804 1 42603 26592 28316 28333 41981 41981 0.023328834091330464 SLQYRKVFY 9 Unmodified _SLQYRKVFY_ 0 0 0 REV__ENST00000480436.5_1_20:13370602-13370710:-|nuORF REV__ENST00000480436.5_1_20:13370602-13370710:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2774658203125 2 602.329673 1202.64479 NaN NaN NaN NaN NaN NaN NaN 156.04 1 151.26 150.76 151.76 -4.7791 0 0 0 0.22962 1 31022 31022 14.838 0.43289 1 + 42604 22164 28317 28334 41982 41982 0.051576937770278164 SLRARHLHGR 10 Unmodified _SLRARHLHGR_ 0 0 0 REV__ZNF644|p.G990R|1|0.14|ENSG00000122482|chr1:90938386-90938386|C/T|missense_variant REV__ZNF644|p.G990R|1|0.14|ENSG00000122482|chr1:90938386-90938386|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2788696289062 2 601.852504 1201.69046 1.2181 0.00073309 0.86068 0.000518 2.0787 0.0012511 602.3557938285757 163.74 0.13849 158.95 158.88 159.02 -4.7898 5 3 2 0 0 0 0.73527 1 32674 32674 7.609 0.88579 1 5054600 + 42605 25588 28318 28335 41983 41983 0.09767776802618755 SLRCLWRYWWT 11 Unmodified _SLRCLWRYWWT_ 0 0 0 REV__ENST00000474734.5_1_9:136325188-136330196:+|nuORF REV__ENST00000474734.5_1_9:136325188-136330196:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6781005859375 3 523.930968 1568.77107 -0.12633 -6.619E-05 2.4084 0.0012619 2.2821 0.0011957 524.2671483273193 128.55 0.17665 123.92 123.87 124.05 -4.6292 6 4 2 0 0 0 0.96197 1 25363 25363 0.40827 0 1 1581600 + 42606 17416 28319 28336 41984 41984 0.00943877010649885 SLRCLWRYWWT 11 Unmodified _SLRCLWRYWWT_ 0 0 0 REV__ENST00000474734.5_1_9:136325188-136330196:+|nuORF REV__ENST00000474734.5_1_9:136325188-136330196:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6849975585938 3 523.930968 1568.77107 NaN NaN NaN NaN NaN NaN NaN 88.636 1 84.641 84.141 85.141 -3.9953 0 0 0 0.23698 1 16886 16886 0.45452 0 1 + 42607 17416 28319 28336 41985 41985 0.00943877010649885 SLRCLWRYWWT 11 Unmodified _SLRCLWRYWWT_ 0 0 0 REV__ENST00000474734.5_1_9:136325188-136330196:+|nuORF REV__ENST00000474734.5_1_9:136325188-136330196:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3943481445312 2 785.392813 1568.77107 NaN NaN NaN NaN NaN NaN NaN 137.6 1 132.76 132.26 133.26 -4.84 0 0 0 0.23698 1 26512 26512 1.3295 0 1 + 42608 17416 28319 28336 41986 41986 0.00943877010649885 SLRCLWRYWWT 11 Unmodified _SLRCLWRYWWT_ 0 0 0 REV__ENST00000474734.5_1_9:136325188-136330196:+|nuORF REV__ENST00000474734.5_1_9:136325188-136330196:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3932495117188 2 785.392813 1568.77107 NaN NaN NaN NaN NaN NaN NaN 150.16 1 145.04 144.54 145.54 -5.1204 0 0 0 0.23698 1 29099 29099 1.3295 0 1 + 42609 17416 28319 28336 41987 41987 0.00943877010649885 SLRDKRRRRLQ 11 Unmodified _SLRDKRRRRLQ_ 0 0 0 REV__ENST00000570168.1_1_16:919345-920044:-|nuORF REV__ENST00000570168.1_1_16:919345-920044:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3826904296875 2 742.455656 1482.89676 NaN NaN NaN NaN NaN NaN NaN 178.1 1 178.1 177.6 178.6 0 0 0 0 0.23698 1 36901 36901 1.3295 0 1 + 42610 23161 28320 28337 41988 41988 0.17462724911092664 SLREFQRF 8 Unmodified _SLREFQRF_ 0 0 0 nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENSG00000048342|ENST00000424120|CC2D2A;ENST00000510220.1_1_4:15534861-15534957:+|nuORF;ENST00000513811.5_1_4:15471657-15545375:+|nuORF nc|ENSG00000048342|Q9P2K1-2|CC2D2A nc|ENSG00000048342|Q9P2K1-2|CC2D2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2739868164062 2 541.790715 1081.56688 0.32626 0.00017676 -3.5986 -0.0019497 -3.2723 -0.0017729 542.2896697672795 143.14 0.3105 143.14 142.89 143.21 0 12 8 2 0 0 0 0.97173 1 28539 28539 7.9102 0 1 3197800 42611 1226 28321 28338 41989 41989 0.029356809116507065 SLRFPGLYI 9 Unmodified _SLRFPGLYI_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2716674804688 2 533.30821 1064.60187 NaN NaN NaN NaN NaN NaN NaN 140.71 1 135.84 135.34 136.34 -4.8678 0 0 0 0.23508 1 27136 27136 11.495 3.5846 1 42612 1631 28322 28339 41990 41990 0.07214923719607214 SLRFRHQV 8 Unmodified _SLRFRHQV_ 0 0 0 REV__ENSG00000141519|ENST00000397545|CCDC40 REV__ENSG00000141519|ENST00000397545|CCDC40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.28173828125 2 521.798875 1041.5832 0.62173 0.00032442 -2.0759 -0.0010832 -1.4541 -0.00075876 521.797928614461 102.15 0.48701 102.15 101.96 102.45 0 16 13 2 0 0 0 0.68827 1 20064 20064 20.454 3.5113 1 2156900 + 42613 16634 28323 28340 41991 41991 0.06406806868426429 SLRFRHQV 8 Unmodified _SLRFRHQV_ 0 0 0 REV__ENSG00000141519|ENST00000397545|CCDC40 REV__ENSG00000141519|ENST00000397545|CCDC40 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2670288085938 2 521.798875 1041.5832 -0.69504 -0.00036267 -0.85244 -0.0004448 -1.5475 -0.00080747 521.7984928925442 106.37 0.55127 101.99 101.72 102.27 -4.3764 23 15 2 0 0 0 0.68827 1 20408 20408 20.454 3.5113 1 2702300 + 42614 16634 28323 28340 41992 41992 0.06406806868426429 SLRHLLPVM 9 Unmodified _SLRHLLPVM_ 0 0 0 nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;AP5Z1|p.Q696Rfs*6|3|0.43|ENSG00000242802|chr7:4790814-4790814|C/-|frameshift_variant;ENSG00000242802|ENST00000649063|AP5Z1;ENST00000491375.1_1_7:4822973-4823147:+|nuORF;ENST00000477680.5_1_7:4815294-4829561:+|nuORF nc|ENSG00000242802|O43299-2|AP5Z1 nc|ENSG00000242802|O43299-2|AP5Z1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2649536132812 2 533.315512 1064.61647 NaN NaN NaN NaN NaN NaN NaN 157.96 1 157.96 157.46 158.46 0 0 0 0 0.22251 1 31712 31712 16.942 1.0951 1 42615 178 28324 28341 41993 41993 0.08674672596112032 SLRIIRLRP 9 Unmodified _SLRIIRLRP_ 0 0 0 REV__ENST00000507013.5_2_4:166249006-166254516:+|nuORF REV__ENST00000507013.5_2_4:166249006-166254516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21343994140625 3 375.252258 1122.73495 NaN NaN NaN NaN NaN NaN NaN 177 1 172.12 171.62 172.62 -4.8739 0 0 0 0.1963 1 35219 35219 0 0 1 + 42616 22495 28325 28342 41994 41994 0.17848787896105023 SLRKAIETVY 10 Unmodified _SLRKAIETVY_ 0 0 0 MLH1|p.N287Tfs*10|1|0.36|ENSG00000076242|chr3:37017571-37017571|A/-|frameshift_variant;nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1;ENSG00000076242|ENST00000231790|MLH1 MLH1|p.N287Tfs*10|1|0.36|ENSG00000076242|chr3:37017571-37017571|A/-|frameshift_variant MLH1|p.N287Tfs*10|1|0.36|ENSG00000076242|chr3:37017571-37017571|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.262939453125 2 590.340238 1178.66592 NaN NaN NaN NaN NaN NaN NaN 143.86 1 139.2 138.7 139.7 -4.656 0 0 0 0.22588 1 28465 28465 7.2892 1.0834 1 42617 1536 28326 28343 41995 41995 0.08373659085896179 SLRKAKKK 8 Unmodified _SLRKAKKK_ 0 0 0 ENSG00000204131|ENST00000633930|NHSL2;nc|ENSG00000204131|Q5HYW2-2|NHSL2 ENSG00000204131|ENST00000633930|NHSL2 ENSG00000204131|ENST00000633930|NHSL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.22235107421875 3 320.222188 957.644734 NaN NaN NaN NaN NaN NaN NaN 97.523 1 93.425 92.925 93.925 -4.0978 0 0 0 0.21486 1 19137 19137 0.45834 0 1 42618 7562 28327 28344 41996 41996 0.16421738567692046 SLRKMPNL 8 Unmodified _SLRKMPNL_ 0 0 0 REV__ENSG00000205832|ENST00000444310|C16orf96 REV__ENSG00000205832|ENST00000444310|C16orf96 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 479.7779235839844 2 479.778762 957.542971 NaN NaN NaN NaN NaN NaN NaN 150.96 1 150.96 150.46 151.46 0 0 0 0 0.21486 1 30232 30232 9.3474 0 1 + 42619 19602 28328 28345 41997 41997 0.06250124153632441 SLRKNHFDY 9 Unmodified _SLRKNHFDY_ 0 0 0 ENST00000442481.5_1_22:22899305-22899988:-|nuORF ENST00000442481.5_1_22:22899305-22899988:-|nuORF ENST00000442481.5_1_22:22899305-22899988:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2755737304688 2 590.298904 1178.58326 NaN NaN NaN NaN NaN NaN NaN 136.25 1 131.42 130.92 131.92 -4.8307 0 0 0 0.23508 1 26233 26233 7.2892 0 1 42620 9901 28329 28346 41998 41998 0.0011076207774749491 SLRLAVIVFLL 11 Unmodified _SLRLAVIVFLL_ 0 0 0 REV__ENST00000432176.6_1_7:22984841-22985015:-|nuORF REV__ENST00000432176.6_1_7:22984841-22985015:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7728881835938 2 622.410466 1242.80638 1.1332 0.00070531 -1.1248 -0.0007001 0.0083759 5.2133E-06 622.4104715079442 158.3 0.32408 153.51 153.26 153.58 -4.7952 10 8 2 0 0 0 0.88504 1 31437 31437 0.172 0 1 891110 + 42621 21631 28330 28347 41999 41999 0.19468862810140308 SLRLGNVAT 9 Unmodified _SLRLGNVAT_ 0 0 0 REV__nc|ENSG00000069869|P46934-3|NEDD4 REV__nc|ENSG00000069869|P46934-3|NEDD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2412414550781 2 465.771991 929.529429 0.054465 2.5368E-05 -0.073936 -3.4438E-05 -0.019472 -9.0693E-06 465.7719299363865 17.785 0.36303 17.785 17.589 17.952 0 28 9 4 0 0 0 0.77734 1 2805 2805 13.906 0 1 21759000 + 42622 23946 28331 28348 42000 42000 0.06184589646022687 SLRLGNVAT 9 Unmodified _SLRLGNVAT_ 0 0 0 REV__nc|ENSG00000069869|P46934-3|NEDD4 REV__nc|ENSG00000069869|P46934-3|NEDD4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.771991 929.529429 -0.3789 -0.00017648 0.21347 9.9429E-05 -0.16543 -7.7054E-05 465.7720983818791 19.027 0.42626 17.702 17.469 17.895 -1.3251 -0.024031 0.00019585 NaN 13.906 32 11 4 NaN NaN NaN NaN 0 NaN NaN 0 18106000 + 42623 23946 28331 28348 0.06184589646022687 SLRLHTAL 8 Unmodified _SLRLHTAL_ 0 0 0 ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1;nc|ENSG00000124126|Q8TCU6-2|PREX1 ENSG00000124126|ENST00000371941|PREX1 ENSG00000124126|ENST00000371941|PREX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.18670654296875 3 304.187143 909.5396 NaN NaN NaN NaN NaN NaN NaN 114.33 1 110.02 109.52 110.52 -4.3136 0 0 0 0.21486 1 22024 22024 1.6526 0 1 42624 3291 28332 28349 42001 42001 0.08121197371247035 SLRMKRKK 8 Unmodified _SLRMKRKK_ 0 0 0 MAP4K4|p.S9Vfs*62|1|0.09|ENSG00000071054|chr2:101698101-101698101|A/-|frameshift_variant MAP4K4|p.S9Vfs*62|1|0.09|ENSG00000071054|chr2:101698101-101698101|A/-|frameshift_variant MAP4K4|p.S9Vfs*62|1|0.09|ENSG00000071054|chr2:101698101-101698101|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69580078125 2 523.834403 1045.65425 NaN NaN NaN NaN NaN NaN NaN 103.97 1 103.97 103.47 104.47 0 0 0 0 0.21486 1 20437 20437 8.5933 0 1 42625 12112 28333 28350 42002 42002 0.13325183581582678 SLRPRGTLT 9 Unmodified _SLRPRGTLT_ 0 0 0 REV__ENSG00000272031|ENST00000606888|ANKRD34A REV__ENSG00000272031|ENST00000606888|ANKRD34A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 334.0345764160156 3 334.201452 999.582528 0.055874 1.8673E-05 -0.87771 -0.00029333 -0.82183 -0.00027466 334.2013907464112 53.391 0.14363 50.304 50.178 50.321 -3.0876 5 3 2 0 0 0 0.88284 1 9819 9819 0.96228 0.18574 1 195220 + 42626 19918 28334 28351 42003 42003 0.08271967428709104 SLRQATEMDE 10 Unmodified _SLRQATEMDE_ 0 0 0 REV__nc|ENSG00000277260|A6NL05|FAM74A7 REV__nc|ENSG00000277260|A6NL05|FAM74A7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2724609375 2 590.269152 1178.52375 NaN NaN NaN NaN NaN NaN NaN 141.15 1 136.17 135.67 136.67 -4.9877 0 0 0 0.22588 1 27178 27178 6.2058 0.47393 1 + 42627 24309 28335 28352 42004 42004 -0.05836921718605481 SLRQILRHKRK 11 Unmodified _SLRQILRHKRK_ 0 0 0 ENST00000537025.6_1_17:66040173-66040476:+|nuORF ENST00000537025.6_1_17:66040173-66040476:+|nuORF ENST00000537025.6_1_17:66040173-66040476:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72406005859375 3 478.975788 1433.90553 0.20206 9.6783E-05 -2.0309 -0.00097273 -1.8288 -0.00087595 479.3090571851952 85.167 0.27647 81.258 81.083 81.359 -3.9093 9 7 2 0 0 0 0.9622 1 16202 16202 0.32927 0.23443 1 992140 42628 11030 28336 28353 42005 42005 0.20593698547577333 SLRQMWRYRSW 11 Unmodified _SLRQMWRYRSW_ 0 0 0 ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-7|DGKZ;ENST00000528615.5_3_11:46366959-46391044:+|nuORF ENST00000531879.5_1_11:46367016-46400221:+|nuORF ENST00000531879.5_1_11:46367016-46400221:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6931762695312 3 523.601622 1567.78304 NaN NaN NaN NaN NaN NaN NaN 154.35 1 154.35 153.85 154.85 0 0 0 0 0.23698 1 30937 30937 0.45452 0 1 42629 10973 28337 28354 42006 42006 0.02185493753836454 SLRQVMFGPGS 11 Unmodified _SLRQVMFGPGS_ 0 0 0 REV__ENST00000580878.1_1_19:40742201-40744828:-|nuORF REV__ENST00000580878.1_1_19:40742201-40744828:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2509765625 2 589.802965 1177.59138 0.34571 0.0002039 0.73992 0.0004364 1.0856 0.0006403 589.8009960067861 134.69 0.14268 134.69 134.6 134.74 0 5 3 2 0 0 0 0.75285 1 26655 26655 8.1555 0.54658 1 1265300 + 42630 23238 28338 28355 42007 42007 0.009685730028650141 SLRQWWPHY 9 Unmodified _SLRQWWPHY_ 0 0 0 ENST00000380502.7_2_9:19102810-19102879:-|nuORF ENST00000380502.7_2_9:19102810-19102879:-|nuORF ENST00000380502.7_2_9:19102810-19102879:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2538757324219 3 424.880602 1271.61998 0.018032 7.6615E-06 -0.47071 -0.0002 -0.45268 -0.00019233 424.88016503314753 100.18 1.339 96.19 95.727 97.066 -3.9895 67 38 3 0 0 0 0.72108 1 19403 19403 5.2969 1.7098 1 2996600 42631 9316 28339 28356 42008 42008 -0.004969413056869598 SLRQWWPHY 9 Unmodified _SLRQWWPHY_ 0 0 0 ENST00000380502.7_2_9:19102810-19102879:-|nuORF ENST00000380502.7_2_9:19102810-19102879:-|nuORF ENST00000380502.7_2_9:19102810-19102879:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 424.880602 1271.61998 0.018512 7.8653E-06 -0.6519 -0.00027698 -0.63339 -0.00026911 424.8801298317535 96.162 0.8324 96.162 95.731 96.563 0 -0.079142 9.7605E-06 NaN 5.2969 37 23 2 NaN NaN NaN NaN 0 NaN NaN 0 3376500 42632 9316 28339 28356 -0.004969413056869598 SLRQWWPHY 9 Unmodified _SLRQWWPHY_ 0 0 0 ENST00000380502.7_2_9:19102810-19102879:-|nuORF ENST00000380502.7_2_9:19102810-19102879:-|nuORF ENST00000380502.7_2_9:19102810-19102879:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 424.880602 1271.61998 -0.12836 -5.4539E-05 -0.52081 -0.00022128 -0.64917 -0.00027582 424.88024188917296 100.55 1.1817 96.39 95.728 96.91 -4.1594 0.14898 0.00017685 NaN 5.2969 70 33 4 NaN NaN NaN NaN 0 NaN NaN 0 5175500 42633 9316 28339 28356 -0.004969413056869598 SLRQWWPHY 9 Unmodified _SLRQWWPHY_ 0 0 0 ENST00000380502.7_2_9:19102810-19102879:-|nuORF ENST00000380502.7_2_9:19102810-19102879:-|nuORF ENST00000380502.7_2_9:19102810-19102879:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 424.880602 1271.61998 0.24783 0.0001053 -0.94573 -0.00040182 -0.6979 -0.00029653 424.8800781946618 100.52 0.7573 96.221 95.782 96.539 -4.297 -0.019397 -0.00036477 NaN 5.2969 49 21 3 NaN NaN NaN NaN 0 NaN NaN 0 3823300 42634 9316 28339 28356 -0.004969413056869598 SLRQYLGEL 9 Unmodified _SLRQYLGEL_ 0 0 0 REV__ENST00000431998.1_1_19:11849633-11849717:-|nuORF REV__ENST00000431998.1_1_19:11849633-11849717:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 116.13 1 111.64 111.14 112.14 -4.486 0 0 0 0.23508 1 22897 22897 2.086 0.60411 1 + 42635 21629 28340 28357 42009 42009 0.0461712798901317 SLRQYLGEL 9 Unmodified _SLRQYLGEL_ 0 0 0 REV__ENST00000431998.1_1_19:11849633-11849717:-|nuORF REV__ENST00000431998.1_1_19:11849633-11849717:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2012939453125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 131.78 1 127.14 126.64 127.64 -4.6399 0 0 0 0.23508 1 25968 25968 2.2828 0 1 + 42636 21629 28340 28357 42010 42010 0.0461712798901317 SLRQYLGEL 9 Unmodified _SLRQYLGEL_ 0 0 0 REV__ENST00000431998.1_1_19:11849633-11849717:-|nuORF REV__ENST00000431998.1_1_19:11849633-11849717:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 104.46 1 100.11 99.611 100.61 -4.346 0 0 0 0.23508 1 20011 20011 4.1895 0.24511 1 + 42637 21629 28340 28357 42011 42011 0.0461712798901317 SLRQYLGEL 9 Unmodified _SLRQYLGEL_ 0 0 0 REV__ENST00000431998.1_1_19:11849633-11849717:-|nuORF REV__ENST00000431998.1_1_19:11849633-11849717:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 132.13 1 127.33 126.83 127.83 -4.799 0 0 0 0.23508 1 25438 25438 2.2828 0 1 + 42638 21629 28340 28357 42012 42012 0.0461712798901317 SLRRATEF 8 Unmodified _SLRRATEF_ 0 0 0 REV__ENST00000496955.1_1_6:30571493-30571981:-|nuORF REV__ENST00000496955.1_1_6:30571493-30571981:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2684631347656 2 490.269616 978.524678 NaN NaN NaN NaN NaN NaN NaN 161.66 1 156.52 156.02 157.02 -5.1438 0 0 0 0.21486 1 31401 31401 7.2892 0 1 + 42639 19548 28341 28358 42013 42013 0.03455705503279205 SLRRAWYL 8 Unmodified _SLRRAWYL_ 0 0 0 KALRN|p.T114Rfs*55|1|0.17|ENSG00000160145|chr3:124264577-124264577|A/-|frameshift_variant KALRN|p.T114Rfs*55|1|0.17|ENSG00000160145|chr3:124264577-124264577|A/-|frameshift_variant KALRN|p.T114Rfs*55|1|0.17|ENSG00000160145|chr3:124264577-124264577|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2675170898438 2 532.803626 1063.5927 0.21261 0.00011328 -1.3691 -0.00072945 -1.1565 -0.00061617 532.8028175561213 125.03 0.81143 120.43 120.02 120.83 -4.5984 55 22 3 0 0 0 8448 1 24601 24601 9.544 0 1 5976000 42640 11974 28342 28359 42014 42014 0.06344575153934784 SLRRHFNI 8 Unmodified _SLRRHFNI_ 0 0 0 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2662963867188 2 521.798875 1041.5832 0.62173 0.00032442 -2.0759 -0.0010832 -1.4541 -0.00075876 521.797928614461 102.15 0.48701 102.15 101.96 102.45 0 16 13 2 0 0 0 0.81042 1 20087 20087 16.942 2.104 1 2156900 42641 6517 28343 28360 42015 42015 0.06406806868426429 SLRRNLGF 8 Unmodified _SLRRNLGF_ 0 0 0 nc|ENSG00000067191|Q02641-3|CACNB1;nc|ENSG00000067191|Q02641-2|CACNB1 nc|ENSG00000067191|Q02641-3|CACNB1 nc|ENSG00000067191|Q02641-3|CACNB1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7804870605469 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 147.77 1 142.71 142.21 143.21 -5.0595 0 0 0 0.21486 1 28613 28613 8.5933 0.68312 1 42642 12229 28344 28361 42016 42016 0.06343715602793054 SLRRRLIL 8 Unmodified _SLRRRLIL_ 0 0 0 PAPPA|p.L1144Dfs*7|1|0.39|ENSG00000182752|chr9:116334893-116334894|CT/-|frameshift_variant;PAPPA|p.L1488Qfs*6|1|0.82|ENSG00000182752|chr9:116362706-116362707|CT/-|frameshift_variant;ENSG00000182752|ENST00000328252|PAPPA;PAPPA|p.T1006Nfs*4|1|0.27|ENSG00000182752|chr9:116302813-116302814|-/A|frameshift_variant PAPPA|p.L1144Dfs*7|1|0.39|ENSG00000182752|chr9:116334893-116334894|CT/-|frameshift_variant PAPPA|p.L1144Dfs*7|1|0.39|ENSG00000182752|chr9:116334893-116334894|CT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 513.899658203125 2 513.848368 1025.68218 NaN NaN NaN NaN NaN NaN NaN 165.44 1 160.65 160.15 161.15 -4.7898 0 0 0 0.23025 1 33134 33134 0.063987 0 1 42643 6809 28345 28362 42017 42017 0.17036829833318734 SLRRRVRRL 9 Unmodified _SLRRRVRRL_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 606.4015502929688 2 606.399622 1210.78469 NaN NaN NaN NaN NaN NaN NaN 167.56 1 162.77 162.27 163.27 -4.7898 0 0 0 0.23508 1 33807 33807 2.0598 0.21551 1 42644 7246 28346 28363 42018 42018 0.1877291562479968 SLRRSLSGS 9 Unmodified _SLRRSLSGS_ 0 0 0 SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2 SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77386474609375 2 481.772522 961.530492 NaN NaN NaN NaN NaN NaN NaN 162.14 1 162.14 161.64 162.64 0 0 0 0 0.23508 1 32578 32578 13.042 0.51092 1 42645 5863 28347 28364 42019 42019 0.04818804014962552 SLRTAGVITAY 11 Unmodified _SLRTAGVITAY_ 0 0 0 REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|146|3|sense REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|146|3|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3281860351562 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 142.37 1 137.34 136.84 137.84 -5.0261 0 0 0 0.22862 1 27439 27439 9.3831 0.63772 1 + 42646 23611 28348 28365 42020 42020 0.06533086051786086 SLRTCIIGV 9 Unmodified _SLRTCIIGV_ 0 0 0 REV__nc|ENSG00000103507|O14874-2|BCKDK REV__nc|ENSG00000103507|O14874-2|BCKDK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7806091308594 2 481.278595 960.542637 0.20578 9.9036E-05 -0.19525 -9.3968E-05 0.010531 5.0682E-06 481.27845266105317 106.77 0.66539 106.77 106.43 107.1 0 29 18 2 0 0 0 0.36931 1 20966 20966 27.629 2.9549 1 1959200 + 42647 14887 28349 28366 42021 42021 0.060787044337757834 SLRTCIIGV 9 Unmodified _SLRTCIIGV_ 0 0 0 REV__nc|ENSG00000103507|O14874-2|BCKDK REV__nc|ENSG00000103507|O14874-2|BCKDK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7803039550781 2 481.278595 960.542637 0.56144 0.00027021 -0.32592 -0.00015686 0.23552 0.00011335 481.2783110632123 110.65 0.56775 106.42 106.12 106.69 -4.2289 23 15 2 0 0 0 0.36931 1 21304 21304 27.629 4.4804 1 1219700 + 42648 14887 28349 28366 42022 42022 0.060787044337757834 SLRTLYRFYHE 11 Unmodified _SLRTLYRFYHE_ 0 0 0 ENST00000481082.1_1_1:157512505-157514867:-|nuORF;nc|ENSG00000143297|Q96RD9-4|FCRL5;FCRL5|p.S707Lfs*11|1|0.33|ENSG00000143297|chr1:157524400-157524400|G/-|frameshift_variant;nc|ENSG00000143297|Q96RD9-3|FCRL5;FCRL5|p.H788Sfs*2|1|0.35|ENSG00000143297|chr1:157521170-157521171|-/A|frameshift_variant;ENSG00000143297|ENST00000361835|FCRL5 ENST00000481082.1_1_1:157512505-157514867:-|nuORF ENST00000481082.1_1_1:157512505-157514867:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3911743164062 2 742.885875 1483.7572 0.64992 0.00048282 -1.0522 -0.00078165 -0.40226 -0.00029883 742.8849616854983 93.612 1.0676 89.622 89.109 90.176 -3.9907 46 30 2 0 0 0 0.96166 1 18265 18265 1.3295 1.3295 1 2603700 42649 4470 28350 28367 42023 42023 0.034669227832182514 SLRTRRNLR 9 Unmodified _SLRTRRNLR_ 0 0 0 nc|ENSG00000133103|Q9Y2V7-2|COG6;ENSG00000133103|ENST00000455146|COG6 nc|ENSG00000133103|Q9Y2V7-2|COG6 nc|ENSG00000133103|Q9Y2V7-2|COG6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 586.3827514648438 2 586.360162 1170.70577 NaN NaN NaN NaN NaN NaN NaN 166.02 1 161.04 160.54 161.54 -4.9811 0 0 0 0.23508 1 32502 32502 6.7232 0.09279 1 42650 3782 28351 28368 42024 42024 0.12724643599835872 SLRWYQHP 8 Unmodified _SLRWYQHP_ 0 0 0 ENST00000503943.5_1_5:87524260-87546470:-|nuORF;ENST00000515477.5_1_5:87517271-87564570:-|nuORF;TMEM161B|p.F179Lfs*20|1|0.22|ENSG00000164180|chr5:88207093-88207094|-/A|frameshift_variant;nc|ENSG00000164180|Q8NDZ6-2|TMEM161B;TMEM161B|p.L243Ffs*90|1|0.27|ENSG00000164180|chr5:88205885-88205886|-/A|frameshift_variant;ENSG00000164180|ENST00000296595|TMEM161B ENST00000503943.5_1_5:87524260-87546470:-|nuORF ENST00000503943.5_1_5:87524260-87546470:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7775268554688 2 543.777608 1085.54066 NaN NaN NaN NaN NaN NaN NaN 113.52 1 113.52 113.02 114.02 0 0 0 0 0.18898 1 22323 22323 28.487 4.6971 1 42651 5520 28352 28369 42025 42025 0.001314117401761905 SLRWYQHP 8 Unmodified _SLRWYQHP_ 0 0 0 ENST00000503943.5_1_5:87524260-87546470:-|nuORF;ENST00000515477.5_1_5:87517271-87564570:-|nuORF;TMEM161B|p.F179Lfs*20|1|0.22|ENSG00000164180|chr5:88207093-88207094|-/A|frameshift_variant;nc|ENSG00000164180|Q8NDZ6-2|TMEM161B;TMEM161B|p.L243Ffs*90|1|0.27|ENSG00000164180|chr5:88205885-88205886|-/A|frameshift_variant;ENSG00000164180|ENST00000296595|TMEM161B ENST00000503943.5_1_5:87524260-87546470:-|nuORF ENST00000503943.5_1_5:87524260-87546470:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7962646484375 2 543.777608 1085.54066 0.44033 0.00023944 -1.9904 -0.0010823 -1.5501 -0.00084291 543.7769220983378 118.14 0.34111 113.64 113.46 113.8 -4.502 14 9 2 0 0 0 0.54916 1 23260 23260 25.399 5.7734 1 2052200 42652 5520 28352 28369 42026 42026 0.001314117401761905 SLSADVPKV 9 Unmodified _SLSADVPKV_ 0 0 0 nc|ENSG00000143845|Q9NVF9-3|ETNK2;ENSG00000143845|ENST00000367202|ETNK2;nc|ENSG00000143845|Q9NVF9-2|ETNK2 nc|ENSG00000143845|Q9NVF9-3|ETNK2 nc|ENSG00000143845|Q9NVF9-3|ETNK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2203063964844 2 458.260925 914.507297 0.27842 0.00012759 0.051199 2.3463E-05 0.32961 0.00015105 458.26091785251447 85.247 0.91719 85.247 84.942 85.859 0 32 25 2 0 0 0 0.19171 1 16632 16632 38.176 5.3899 1 1407500 42653 4523 28353 28370 42027 42027 0.04662365177614447 SLSADVPKV 9 Unmodified _SLSADVPKV_ 0 0 0 nc|ENSG00000143845|Q9NVF9-3|ETNK2;ENSG00000143845|ENST00000367202|ETNK2;nc|ENSG00000143845|Q9NVF9-2|ETNK2 nc|ENSG00000143845|Q9NVF9-3|ETNK2 nc|ENSG00000143845|Q9NVF9-3|ETNK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2382507324219 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 89.139 1 85.346 84.846 85.846 -3.7926 0 0 0 0.14378 1 17440 17440 31.268 5.0002 1 42654 4523 28353 28370 42028 42028 0.04662365177614447 SLSADVPKV 9 Unmodified _SLSADVPKV_ 0 0 0 nc|ENSG00000143845|Q9NVF9-3|ETNK2;ENSG00000143845|ENST00000367202|ETNK2;nc|ENSG00000143845|Q9NVF9-2|ETNK2 nc|ENSG00000143845|Q9NVF9-3|ETNK2 nc|ENSG00000143845|Q9NVF9-3|ETNK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2383728027344 2 458.260925 914.507297 0.34459 0.00015791 -0.26443 -0.00012118 0.080157 3.6733E-05 458.260732939496 89.173 1 85.128 84.587 85.587 -4.0443 42 28 2 0 0 0 0.55539 1 16912 16912 16.149 0.30192 1 1110300 42655 4523 28353 28370 42029 42029 0.04662365177614447 SLSADVPKV 9 Unmodified _SLSADVPKV_ 0 0 0 nc|ENSG00000143845|Q9NVF9-3|ETNK2;ENSG00000143845|ENST00000367202|ETNK2;nc|ENSG00000143845|Q9NVF9-2|ETNK2 nc|ENSG00000143845|Q9NVF9-3|ETNK2 nc|ENSG00000143845|Q9NVF9-3|ETNK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23858642578125 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 89.226 1 85.462 84.962 85.962 -3.7642 0 0 0 0.21078 1 17085 17085 20.415 1.1575 1 42656 4523 28353 28370 42030 42030 0.04662365177614447 SLSCCCCCYP 10 Unmodified _SLSCCCCCYP_ 0 0 0 REV__ENST00000377988.6_1_9:35829886-35834472:+|nuORF REV__ENST00000377988.6_1_9:35829886-35834472:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2733154296875 2 541.167627 1080.3207 0.30795 0.00016665 -1.5487 -0.0008381 -1.2407 -0.00067145 541.1670941913414 156.97 0.20367 156.97 156.83 157.03 0 6 5 2 0 0 0 0.91149 1 31483 31483 1.6526 0.96225 1 2348700 + 42657 21108 28354 28371 42031 42031 -0.21624725632250374 SLSCCCCCYP 10 Unmodified _SLSCCCCCYP_ 0 0 0 REV__ENST00000377988.6_1_9:35829886-35834472:+|nuORF REV__ENST00000377988.6_1_9:35829886-35834472:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2822875976562 2 541.167627 1080.3207 0.4133 0.00022366 2.8669 0.0015515 3.2802 0.0017752 541.1708215364946 147.67 0.20786 142.61 142.46 142.66 -5.0595 7 5 2 0 0 0 0.91149 1 28574 28574 0.40072 0.40072 1 2804500 + 42658 21108 28354 28371 42032 42032 -0.21624725632250374 SLSDQYSLLG 10 Unmodified _SLSDQYSLLG_ 0 0 0 REV__ENSG00000112164|ENST00000373256|GLP1R REV__ENSG00000112164|ENST00000373256|GLP1R MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2654418945312 2 541.771854 1081.52915 0.15814 8.5678E-05 -0.63035 -0.00034151 -0.47221 -0.00025583 541.7714607876458 25.972 0.52064 24.338 24.062 24.583 -1.6347 33 14 4 0 0 0 1.1258 1 4334 4334 0.26539 0.2216 1 10909000 + 42659 15280 28355 28372 42033 42033 -0.0083487486449485 SLSEKTVLL 9 Unmodified _SLSEKTVLL_ 0 0 0 ENSG00000085063|ENST00000642928|CD59 ENSG00000085063|ENST00000642928|CD59 ENSG00000085063|ENST00000642928|CD59 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 990.4134521484375 1 989.587738 988.580462 0.91968 0.0009101 -0.84001 -0.00083126 0.079669 7.8839E-05 989.5868435555733 102.81 0.41612 102.81 102.55 102.97 0 16 11 2 0 0 0 0.063365 1 20207 20207 66.457 24.617 1 1636200 42660 1674 28356 28373 42034 42034 0.08571493900228688 SLSFMDSCSLN 11 Unmodified _SLSFMDSCSLN_ 0 0 0 MEP1B|p.F267Lfs*9|1|0.21|ENSG00000141434|chr18:32208150-32208150|T/-|frameshift_variant MEP1B|p.F267Lfs*9|1|0.21|ENSG00000141434|chr18:32208150-32208150|T/-|frameshift_variant MEP1B|p.F267Lfs*9|1|0.21|ENSG00000141434|chr18:32208150-32208150|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2880859375 2 602.254656 1202.49476 NaN NaN NaN NaN NaN NaN NaN 140.41 1 135.42 134.92 135.92 -4.9877 0 0 0 0.22632 1 27024 27024 0.03141 0 1 42661 12129 28357 28374 42035 42035 -0.09838782339238605 SLSGCSIP 8 Unmodified _SLSGCSIP_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1;PKHD1|p.H2893Pfs*2|1|0.4|ENSG00000170927|chr6:51754903-51754904|-/G|frameshift_variant;PKHD1|p.V1347M|1|0.19|ENSG00000170927|chr6:52025771-52025771|C/T|missense_variant;PKHD1|p.P1545Qfs*47|1|0.37|ENSG00000170927|chr6:52025176-52025176|G/-|frameshift_variant;PKHD1|p.F1531Lfs*61|1|0.39|ENSG00000170927|chr6:52025217-52025217|A/-|frameshift_variant nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 382.4864501953125 2 382.186371 762.35819 NaN NaN NaN NaN NaN NaN NaN 95.149 1 95.149 94.649 95.649 0 0 0 0 0.23749 1 18638 18638 0.0082765 0 1 42662 6113 28358 28375 42036 42036 -0.032494837167973856 SLSGDGPS 8 Unmodified _SLSGDGPS_ 0 0 0 REV__ENST00000406438.4_1_17:18230495-18230729:+|nuORF REV__ENST00000406438.4_1_17:18230495-18230729:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2020263671875 2 360.163951 718.313348 NaN NaN NaN NaN NaN NaN NaN 134.59 1 129.77 129.27 130.27 -4.8175 0 0 0 0.21486 1 25909 25909 5.2307 0 1 + 42663 21390 28359 28376 42037 42037 -0.05707591258465072 SLSGGDLA 8 Unmodified _SLSGGDLA_ 0 0 0 BEND3|p.E692Rfs*21|1|0.28|ENSG00000178409|chr6:107069117-107069118|-/G|frameshift_variant;ENSG00000178409|ENST00000369042|BEND3 BEND3|p.E692Rfs*21|1|0.28|ENSG00000178409|chr6:107069117-107069118|-/G|frameshift_variant BEND3|p.E692Rfs*21|1|0.28|ENSG00000178409|chr6:107069117-107069118|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.1645812988281 2 360.182143 718.349734 NaN NaN NaN NaN NaN NaN NaN 79.28 1 79.28 78.78 79.78 0 0 0 0 0.23366 1 15427 15427 0.62683 0.50396 1 42664 314 28360 28377 42038 42038 -0.02070714361775572 SLSGGLFRSNL 11 Unmodified _SLSGGLFRSNL_ 0 0 0 NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000574894.1_1_16:16367711-16371421:+|nuORF NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3148193359375 2 575.814387 1149.61422 0.62152 0.00035788 -1.1278 -0.00064942 -0.50632 -0.00029154 575.8133193729882 111.28 0.55864 107.05 106.69 107.25 -4.2289 32 15 3 0 0 0 0.59903 1 21432 21432 18.146 3.3081 1 1882200 42665 2176 28361 28378 42039 42039 0.04539915392001603 SLSHFSTWLPV 11 Unmodified _SLSHFSTWLPV_ 0 0 0 REV__ENST00000381482.7_1_20:2126675-2127125:+|nuORF REV__ENST00000381482.7_1_20:2126675-2127125:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2426452636719 3 425.224034 1272.65027 -1.7882 -0.00076039 -1.2665 -0.00053856 -3.0547 -0.0012989 425.2234828512212 16.053 0.41083 14.699 14.546 14.957 -1.3534 35 11 4 0 0 0 0.96089 1 2297 2297 7.4771 1.6936 1 9286000 + 42666 21169 28362 28379 42040 42040 0.024853725688444683 SLSHHATP 8 Unmodified _SLSHHATP_ 0 0 0 ENSG00000035141|ENST00000430566|FAM136A ENSG00000035141|ENST00000430566|FAM136A ENSG00000035141|ENST00000430566|FAM136A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25299072265625 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 103.75 1 103.75 103.25 104.25 0 0 0 0 0.21486 1 20388 20388 4.756 0 1 42667 1166 28363 28380 42041 42041 -0.01620514484955038 SLSKSVSNLYY 11 Unmodified _SLSKSVSNLYY_ 0 0 0 REV__ENSG00000149488|ENST00000358864|TMC2 REV__ENSG00000149488|ENST00000358864|TMC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7601318359375 2 630.82716 1259.63977 NaN NaN NaN NaN NaN NaN NaN 121.72 1 121.72 121.22 122.22 0 0 0 0 0.22632 1 23994 23994 0.03141 0 1 + 42668 17008 28364 28381 42042 42042 0.02033345123777508 SLSLALTFQ 9 Unmodified _SLSLALTFQ_ 0 0 0 REV__ENSG00000183878|ENST00000545955|UTY REV__ENSG00000183878|ENST00000545955|UTY MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2765808105469 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 150.02 1 150.02 149.52 150.52 0 0 0 0 0.23508 1 30031 30031 10.074 0 1 + 42669 18874 28365 28382 42043 42043 0.048469382116991255 SLSLRLEEV 9 Unmodified _SLSLRLEEV_ 0 0 0 REV__tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1 REV__tr|U7SM68|U7SM68_FUSNUOutermembraneproteinTolCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02098PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7006225585938 2 523.298039 1044.58152 0.086087 4.5049E-05 -0.40031 -0.00020948 -0.31422 -0.00016443 523.2979464039696 88.27 0.76365 88.27 87.919 88.682 0 55 21 3 0 0 0 0.17396 1 17199 17199 51.63 0 1 13657000 + 42670 24957 28366 28383 42044 42044 0.061017082691250835 SLSLYGKRY 9 Unmodified _SLSLYGKRY_ 0 0 0 REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7741088867188 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 125.63 1 120.98 120.48 121.48 -4.6495 0 0 0 0.22621 1 24173 24173 15.847 0 1 + 42671 19534 28367 28384 42045 42045 0.04757431851635374 SLSLYGKRY 9 Unmodified _SLSLYGKRY_ 0 0 0 REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7899169921875 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 125.66 1 121.01 120.51 121.51 -4.6495 0 0 0 0.19652 1 24179 24179 0.40827 0 1 + 42672 19534 28367 28384 42046 42046 0.04757431851635374 SLSMEMEEM 9 Unmodified _SLSMEMEEM_ 0 0 0 REV__ENST00000396667.7_2_7:12254545-12258110:+|nuORF REV__ENST00000396667.7_2_7:12254545-12258110:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7899780273438 2 543.711236 1085.40792 0.2114 0.00011494 2.5141 0.001367 2.7255 0.0014819 543.7121762723606 89.171 0.34685 89.171 88.896 89.243 0 16 9 2 0 0 0 0.8319 1 17391 17391 4.3292 0 1 1742600 + 42673 21282 28368 28385 42047 42047 -0.13136904885300282 SLSNGGSK 8 Unmodified _SLSNGGSK_ 0 0 0 REV__ENST00000554086.1_1_14:61773915-61789493:-|nuORF REV__ENST00000554086.1_1_14:61773915-61789493:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2124328613281 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 89.618 1 85.84 85.34 86.34 -3.7779 0 0 0 0.23782 1 17155 17155 0.12286 0 1 + 42674 22970 28369 28386 42048 42048 -0.012719096131945662 SLSPLPSRPGA 11 Unmodified _SLSPLPSRPGA_ 0 0 0 REV__ENST00000498154.5_1_3:71630834-71631062:-|nuORF REV__ENST00000498154.5_1_3:71630834-71631062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.260986328125 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 148.94 1 144.23 143.73 144.73 -4.7095 0 0 0 0.19759 1 29580 29580 19.362 5.4559 1 + 42675 22409 28370 28387 42049 42049 0.055685303633026706 SLSQNLISPQ 10 Unmodified _SLSQNLISPQ_ 0 0 0 REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1 REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7952880859375 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 169.56 1 164.63 164.13 165.13 -4.9295 0 0 0 0.22518 1 33486 33486 22.736 2.3217 1 + 42676 17550 28371 28388 42050 42050 0.032325202637593975 SLSQSKSQP 9 Unmodified _SLSQSKSQP_ 0 0 0 REV__ENSG00000183840|ENST00000329321|GPR39 REV__ENSG00000183840|ENST00000329321|GPR39 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.177734375 2 481.251089 960.487624 0.00093799 4.5141E-07 0.12975 6.244E-05 0.13068 6.2891E-05 481.25114282534514 147.47 0.41809 147.47 147.26 147.68 0 19 11 2 0 0 0 0.39168 1 29522 29522 0.40827 0 1 2012400 + 42677 18870 28372 28389 42051 42051 0.005799891668630153 SLSRDSLVLP 10 Unmodified _SLSRDSLVLP_ 0 0 0 REV__ENST00000511015.1_1_5:462030-464560:+|nuORF REV__ENST00000511015.1_1_5:462030-464560:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7794189453125 2 543.811313 1085.60807 0.3348 0.00018207 0.071287 3.8766E-05 0.40609 0.00022083 544.3128044170626 134.39 0.48952 134.39 134.11 134.6 0 18 13 2 0 0 0 0.23665 1 26543 26543 0.51642 0.3886 1 2357500 + 42678 22544 28373 28390 42052 42052 0.06869397160448898 SLSRELMEV 9 Unmodified _SLSRELMEV_ 0 0 0 nc|ENSG00000167780|O75908-2|SOAT2 nc|ENSG00000167780|O75908-2|SOAT2 nc|ENSG00000167780|O75908-2|SOAT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2653198242188 2 532.276249 1062.53795 0.10228 5.4442E-05 -0.82776 -0.00044059 -0.72547 -0.00038615 532.2746135541951 57.283 0.7886 54.107 53.751 54.54 -3.1761 51 21 3 0 0 0 0.48644 1 10695 10695 20.454 0 1 2451400 42679 12448 28374 28391 42053 42053 0.00917775500352036 SLSRPRTSL 9 Unmodified _SLSRPRTSL_ 0 0 0 REV__ENSG00000006638|ENST00000375190|TBXA2R REV__ENSG00000006638|ENST00000375190|TBXA2R MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 509.3078308105469 2 508.795998 1015.57744 0.33829 0.00017212 2.7686 0.0014087 3.1069 0.0015808 508.79793961712187 156.24 0.52731 150.97 150.63 151.16 -5.2712 21 14 2 0 0 0 0.63075 1 30234 30234 0.40827 0 1 903860 + 42680 13877 28375 28392 42054 42054 0.07027663566088904 SLSRRRQY 8 Unmodified _SLSRRRQY_ 0 0 0 REV__ENST00000550722.5_1_12:112688073-112690246:-|nuORF REV__ENST00000550722.5_1_12:112688073-112690246:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2618408203125 2 533.299239 1064.58392 NaN NaN NaN NaN NaN NaN NaN 31.222 1 29.074 28.574 29.574 -2.1483 0 0 0 0.21486 1 5373 5373 9.3474 0.75416 1 + 42681 22926 28376 28393 42055 42055 0.05421601517468844 SLSRRRRP 8 Unmodified _SLSRRRRP_ 0 0 0 AEBP1|p.G73Afs*219|1|0.17|ENSG00000106624|chr7:44104878-44104878|G/-|frameshift_variant AEBP1|p.G73Afs*219|1|0.17|ENSG00000106624|chr7:44104878-44104878|G/-|frameshift_variant AEBP1|p.G73Afs*219|1|0.17|ENSG00000106624|chr7:44104878-44104878|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.1946716308594 3 343.212574 1026.61589 NaN NaN NaN NaN NaN NaN NaN 83.298 1 83.298 82.798 83.798 0 0 0 0 0.21486 1 16242 16242 1.4819 0 1 42682 87 28377 28394 42056 42056 0.10365013991281558 SLSRRRRP 8 Unmodified _SLSRRRRP_ 0 0 0 AEBP1|p.G73Afs*219|1|0.17|ENSG00000106624|chr7:44104878-44104878|G/-|frameshift_variant AEBP1|p.G73Afs*219|1|0.17|ENSG00000106624|chr7:44104878-44104878|G/-|frameshift_variant AEBP1|p.G73Afs*219|1|0.17|ENSG00000106624|chr7:44104878-44104878|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.222900390625 3 343.212574 1026.61589 NaN NaN NaN NaN NaN NaN NaN 83.771 1 80.163 79.663 80.663 -3.6079 0 0 0 0.21486 1 16379 16379 3.5965 0 1 42683 87 28377 28394 42057 42057 0.10365013991281558 SLSSAITA 8 Unmodified _SLSSAITA_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;SYNE1|p.I2756*|1|0.12|ENSG00000131018|chr6:152387293-152387293|T/-|frameshift_variant;SYNE1|p.N2333Kfs*2|1|0.32|ENSG00000131018|chr6:152401168-152401169|-/T|frameshift_variant;SYNE1|p.S2126Pfs*10|1|0.33|ENSG00000131018|chr6:152409564-152409564|A/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-6|SYNE1;SYNE1|p.M2832Nfs*53|1|0.25|ENSG00000131018|chr6:152385831-152385832|-/T|frameshift_variant;SYNE1|p.F1612L|1|0.25|ENSG00000131018|chr6:152428345-152428345|G/C|missense_variant;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.F1612L|1|0.25|ENSG00000131018|chr6:152428345-152428345|G/C|missense_variant;nc|ENSG00000041515|Q9Y6X6|MYO16 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21728515625 2 375.205618 748.396684 NaN NaN NaN NaN NaN NaN NaN 50.71 1 47.665 47.165 48.165 -3.0453 0 0 0 0.23749 1 9297 9297 0.0082765 0 1 42684 3655;1196;25804 28378 28395 42058 42058 0.012421451893601443 SLSSPFYK 8 Unmodified _SLSSPFYK_ 0 0 0 REV__ENST00000590901.5_1_18:47808965-47812340:-|nuORF REV__ENST00000590901.5_1_18:47808965-47812340:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 118.87 1 118.87 118.37 119.37 0 0 0 0 0.21486 1 23414 23414 6.2058 2.2614 1 + 42685 17198 28379 28396 42059 42059 0.00354693631857117 SLSSPFYK 8 Unmodified _SLSSPFYK_ 0 0 0 REV__ENST00000590901.5_1_18:47808965-47812340:-|nuORF REV__ENST00000590901.5_1_18:47808965-47812340:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646728515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 122.48 1 117.79 117.29 118.29 -4.6873 0 0 0 0.21486 1 23520 23520 1.4819 0.28856 1 + 42686 17198 28379 28396 42060 42060 0.00354693631857117 SLSSSARAWT 10 Unmodified _SLSSSARAWT_ 0 0 0 REV__ENSG00000063169|ENST00000594866|BICRA REV__ENSG00000063169|ENST00000594866|BICRA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.269775390625 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 92.006 1 88.081 87.581 88.581 -3.9251 0 0 0 2.8426 1 18016 18016 0.26539 0.13757 1 + 42687 14157 28380 28397 42061 42061 -0.004609195675357114 SLSSSLFPAA 10 Unmodified _SLSSSLFPAA_ 0 0 0 REV__SLC39A7|p.F151Lfs*87|1|0.37|ENSG00000112473|chr6:33201781-33201781|T/-|frameshift_variant REV__SLC39A7|p.F151Lfs*87|1|0.37|ENSG00000112473|chr6:33201781-33201781|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25836181640625 2 490.258382 978.502212 0.21652 0.00010615 -0.15497 -7.5974E-05 0.061553 3.0177E-05 490.25831527336044 149.91 0.6346 145.18 144.79 145.43 -4.7323 33 17 3 0 0 0 0.33163 1 29716 29716 5.8681 3.2251 1 3295100 + 42688 24642 28381 28398 42062 42062 0.012100613149982564 SLSSYPRQQL 10 Unmodified _SLSSYPRQQL_ 0 0 0 chr2:134362144-134362275|311|14.0|0.0|14.52|+|1|None,MGAT5|2 chr2:134362144-134362275|311|14.0|0.0|14.52|+|1|None,MGAT5|2 chr2:134362144-134362275|311|14.0|0.0|14.52|+|1|None,MGAT5|2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.29095458984375 3 393.543655 1177.60914 -0.21285 -8.3767E-05 0.15297 6.0201E-05 -0.059882 -2.3566E-05 393.543746865563 77.465 0.53303 74.001 73.719 74.252 -3.4633 24 14 2 0 0 0 0.91149 1 15094 15094 1.7423 1.1791 1 902190 42689 545 28382 28399 42063 42063 0.027436115293767216 SLSTEQLFR 9 Unmodified _SLSTEQLFR_ 0 0 0 ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000466762.1_1_3:137982955-138014731:+|nuORF ENST00000460495.5_1_3:137956301-138014731:+|nuORF ENST00000460495.5_1_3:137956301-138014731:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2600708007812 2 540.787838 1079.56112 0.33009 0.00017851 4.4281 0.0023947 4.7582 0.0025732 540.7890491504629 153.08 0.21603 148.32 148.26 148.48 -4.7684 7 5 2 0 0 0 0.79204 1 30445 30445 3.9444 1.6417 1 761500 42690 2774 28383 28400 42064 42064 0.024525376093379236 SLSYTITSV 9 Unmodified _SLSYTITSV_ 0 0 0 tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1 tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1 tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1746826171875 3 324.174569 969.501877 NaN NaN NaN NaN NaN NaN NaN 75.647 1 72.013 71.513 72.513 -3.6337 0 0 0 0.23508 1 14381 14381 2.4985 1.3051 1 42691 25962 28384 28401 42065 42065 0.015906415951462805 SLTAGSQRKV 10 Unmodified _SLTAGSQRKV_ 0 0 0 ENSG00000175711|ENST00000320865|B3GNTL1;ENST00000571394.1_1_17:80904781-80918254:-|nuORF ENSG00000175711|ENST00000320865|B3GNTL1 ENSG00000175711|ENST00000320865|B3GNTL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6778564453125 2 523.80128 1045.58801 -0.48882 -0.00025604 0.85236 0.00044647 0.36355 0.00019043 523.7993260915616 134.78 0.13974 129.91 129.86 130 -4.8726 5 3 2 0 0 0 0.88533 1 25891 25891 8.7454 1.4562 1 1108600 42692 6429 28385 28402 42066 42066 0.06703646220512383 SLTAVGAT 8 Unmodified _SLTAVGAT_ 0 0 0 ENSG00000241878|ENST00000439502|PISD;ENST00000473770.5_1_22:32015600-32017204:-|nuORF;ENST00000460723.5_1_22:32015600-32017569:-|nuORF;nc|ENSG00000241878|Q9UG56-2|PISD ENSG00000241878|ENST00000439502|PISD ENSG00000241878|ENST00000439502|PISD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2008361816406 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 65.807 1 62.524 62.024 63.024 -3.2832 0 0 0 0.21486 1 12376 12376 8.5933 0 1 42693 7860 28386 28403 42067 42067 0.015661625349594033 SLTELRAAEP 10 Unmodified _SLTELRAAEP_ 0 0 0 ENSG00000175294|ENST00000312106|CATSPER1;ENST00000529244.1_1_11:65786296-65788320:-|nuORF ENSG00000175294|ENST00000312106|CATSPER1 ENSG00000175294|ENST00000312106|CATSPER1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7940673828125 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 124.97 1 120.32 119.82 120.82 -4.6495 0 0 0 0.22573 1 24045 24045 15.248 1.3424 1 42694 6398 28387 28404 42068 42068 0.032325202637593975 SLTETEAAP 9 Unmodified _SLTETEAAP_ 0 0 0 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22662353515625 2 459.724372 917.434192 -0.023569 -1.0835E-05 -0.29686 -0.00013648 -0.32043 -0.00014731 459.7241750783211 62.989 0.95081 60.002 59.614 60.565 -2.9878 40 27 2 0 0 0 0.44262 1 12209 12209 23.148 2.6948 1 2057700 42695 7151 28388 28405 42069 42069 -0.027828083356780553 SLTFQSLLPS 10 Unmodified _SLTFQSLLPS_ 0 0 0 ENST00000268058.7_1_15:74337649-74338387:+|nuORF ENST00000268058.7_1_15:74337649-74338387:+|nuORF ENST00000268058.7_1_15:74337649-74338387:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77734375 2 546.800414 1091.58628 0.61237 0.00033484 0.90991 0.00049754 1.5223 0.00083238 546.8001278011925 120.01 0.74525 115.37 114.95 115.69 -4.645 61 20 4 0 0 0 0.4551 1 23083 23083 0.20733 0.19406 1 9199500 42696 8387 28389 28406 42070 42070 0.04414592411922058 SLTFVSLASAR 11 Unmodified _SLTFVSLASAR_ 0 0 0 ENST00000591806.5_1_19:1377879-1378284:+|nuORF ENST00000591806.5_1_19:1377879-1378284:+|nuORF ENST00000591806.5_1_19:1377879-1378284:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3194580078125 2 576.324588 1150.63462 0.058975 3.3989E-05 3.6752 0.0021181 3.7342 0.0021521 576.3270926484349 141.96 0.21452 137.31 137.13 137.35 -4.6493 7 5 2 0 0 0 0.60996 1 28027 28027 0.03141 0 1 7641600 42697 11630 28390 28407 42071 42071 0.06533086051786086 SLTGHISTV 9 Unmodified _SLTGHISTV_ 0 0 0 nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1 nc|ENSG00000171566|O43660-2|PLRG1 nc|ENSG00000171566|O43660-2|PLRG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23748779296875 2 457.750724 913.486896 -0.040578 -1.8574E-05 0.16685 7.6377E-05 0.12628 5.7803E-05 457.75076041292374 60.471 1.6011 60.471 60.065 61.666 0 134 45 5 0 0 0 0.13832 1 11534 11534 30.703 21.791 1 226210000 42698 6155 28391 28408 42072 42072 0.02669194517818596 SLTGHISTV 9 Unmodified _SLTGHISTV_ 0 0 0 nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1 nc|ENSG00000171566|O43660-2|PLRG1 nc|ENSG00000171566|O43660-2|PLRG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23809814453125 2 457.750724 913.486896 0.12519 5.7304E-05 -0.26584 -0.00012169 -0.14065 -6.4384E-05 457.75062940912346 63.684 1.7844 60.269 59.831 61.615 -3.4158 139 50 5 0 0 0 0.019872 1 11841 11841 92.491 31.134 1 361480000 42699 6155 28391 28408 42073 42073 0.02669194517818596 SLTGHISTV 9 Unmodified _SLTGHISTV_ 0 0 0 nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1 nc|ENSG00000171566|O43660-2|PLRG1 nc|ENSG00000171566|O43660-2|PLRG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23858642578125 2 457.750724 913.486896 0.2514 0.00011508 -0.34857 -0.00015956 -0.097169 -4.4479E-05 457.75056826164115 63.541 1.7334 60.284 59.88 61.614 -3.2567 146 49 5 0 0 0 2.4497E-07 2 11879 11879;12005 144.35 39.551 1 296930000 42700 6155 28391 28408 42074;42075 42074 0.02669194517818596 SLTGLPPPVSR 11 Unmodified _SLTGLPPPVSR_ 0 0 0 nc|ENSG00000141577|Q9UPN4-3|CEP131;ENSG00000141577|ENST00000450824|CEP131;nc|ENSG00000141577|Q9UPN4|CEP131 nc|ENSG00000141577|Q9UPN4-3|CEP131 nc|ENSG00000141577|Q9UPN4-3|CEP131 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.22100830078125 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 43.243 1 40.524 40.024 41.024 -2.7191 0 0 0 0.22243 1 8102 8102 13.535 1.3073 1 42701 4387 28392 28409 42076 42076 0.08329389914410967 SLTGPDNDP 9 Unmodified _SLTGPDNDP_ 0 0 0 REV__ENSG00000196600|ENST00000306494|SLC22A25 REV__ENSG00000196600|ENST00000306494|SLC22A25 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23028564453125 2 458.206347 914.39814 0.2683 0.00012294 0.49693 0.0002277 0.76523 0.00035063 458.2064416188811 32.785 0.34689 32.785 32.642 32.989 0 11 9 2 0 0 0 0.80521 1 5949 5949 10.824 0.75 1 681810 + 42702 19262 28393 28410 42077 42077 -0.062482655125222664 SLTIQSPNP 9 Unmodified _SLTIQSPNP_ 0 0 0 ENST00000590320.2_1_19:10333357-10333468:-|nuORF ENST00000590320.2_1_19:10333357-10333468:-|nuORF ENST00000590320.2_1_19:10333357-10333468:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73193359375 2 478.756007 955.497461 0.0091334 4.3727E-06 0.13347 6.3899E-05 0.1426 6.8271E-05 478.7560266078721 94.82 0.69209 90.938 90.536 91.228 -3.881 34 19 3 0 0 0 0.73268 1 18130 18130 18.146 0 1 2715800 42703 11600 28394 28411 42078 42078 0.017931771722373924 SLTLEPNQY 9 Unmodified _SLTLEPNQY_ 0 0 0 tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1 tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1 tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26708984375 2 532.766571 1063.51859 -0.17916 -9.5452E-05 -0.069194 -3.6864E-05 -0.24836 -0.00013232 532.7665429378338 69.405 0.60101 69.405 69.071 69.672 0 21 16 2 0 0 0 0.35443 1 13435 13435 28.487 6.7402 1 1813300 42704 26398 28395 28412 42079 42079 -0.010628575189002731 SLTLEPNQY 9 Unmodified _SLTLEPNQY_ 0 0 0 tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1 tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1 tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2860717773438 2 532.766571 1063.51859 -0.04957 -2.6409E-05 0.12626 6.7266E-05 0.076689 4.0857E-05 532.7665502126906 72.757 0.75295 69.447 68.99 69.743 -3.3107 28 20 2 0 0 0 0.65155 1 14149 14149 6.7232 0 1 2050000 42705 26398 28395 28412 42080 42080 -0.010628575189002731 SLTLEPNQY 9 Unmodified _SLTLEPNQY_ 0 0 0 tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1 tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1 tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2688598632812 2 532.766571 1063.51859 0.64735 0.00034489 -0.50925 -0.00027131 0.1381 7.3577E-05 532.7661420178142 73.084 0.60658 69.457 68.985 69.591 -3.6275 27 16 2 0 0 0 0.46541 1 13736 13736 21.747 0 1 2539100 42706 26398 28395 28412 42081 42081 -0.010628575189002731 SLTLEPNQY 9 Unmodified _SLTLEPNQY_ 0 0 0 tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1 tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1 tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.766571 1063.51859 0.42046 0.000224 -0.3069 -0.00016351 0.11355 6.0497E-05 532.7663625267593 72.96 0.48605 69.422 69.124 69.61 -3.5385 -0.01066 -9.1586E-05 NaN 28.487 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3032500 42707 26398 28395 28412 -0.010628575189002731 SLTLRFNDI 9 Unmodified _SLTLRFNDI_ 0 0 0 REV__PAPOLA|p.R225S|1|0.23|ENSG00000090060|chr14:96532398-96532398|A/T|missense_variant REV__PAPOLA|p.R225S|1|0.23|ENSG00000090060|chr14:96532398-96532398|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 99.066 1 95.11 94.61 95.61 -3.9564 0 0 0 0.23508 1 19017 19017 7.1017 0.47135 1 + 42708 24431 28396 28413 42082 42082 0.046171279889904326 SLTLVPHY 8 Unmodified _SLTLVPHY_ 0 0 0 REV__FCRL5|p.S285Y|1|0.14|ENSG00000143297|chr1:157543128-157543128|G/T|missense_variant REV__FCRL5|p.S285Y|1|0.14|ENSG00000143297|chr1:157543128-157543128|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25860595703125 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 116.8 1 112.44 111.94 112.94 -4.3585 0 0 0 0.21486 1 22484 22484 9.3474 0.75416 1 + 42709 23532 28397 28414 42083 42083 0.034706863857991266 SLTPDVPEA 9 Unmodified _SLTPDVPEA_ 0 0 0 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.236328125 2 464.73474 927.454927 0.27526 0.00012792 -0.27197 -0.0001264 0.003281 1.5248E-06 464.73462122573306 91.317 0.47643 87.222 86.985 87.461 -4.0946 22 13 2 0 0 0 0.54354 1 17408 17408 16.942 0 1 2147000 42710 4167 28398 28415 42084 42084 -0.011702179559961223 SLTPDVPEA 9 Unmodified _SLTPDVPEA_ 0 0 0 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2364196777344 2 464.73474 927.454927 0.14169 6.585E-05 -0.13658 -6.3471E-05 0.0051193 2.3791E-06 464.73464293332887 91.024 0.55143 87.216 86.927 87.479 -3.8083 27 15 2 0 0 0 0.54354 1 17420 17420 16.942 0 1 1526300 42711 4167 28398 28415 42085 42085 -0.011702179559961223 SLTPPPRPP 9 Unmodified _SLTPPPRPP_ 0 0 0 REV__ENSG00000176182|ENST00000322217|MYPOP REV__ENSG00000176182|ENST00000322217|MYPOP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77783203125 2 481.276909 960.539266 0.028372 1.3655E-05 0.078599 3.7828E-05 0.10697 5.1483E-05 481.27695501245694 60.203 1.8683 57.27 56.469 58.337 -2.9333 76 53 2 0 0 0 0.48181 1 11531 11531 0.12781 0.0049496 1 1561600 + 42712 18500 28399 28416 42086 42086 0.05741777651417124 SLTPPPRPP 9 Unmodified _SLTPPPRPP_ 0 0 0 REV__ENSG00000176182|ENST00000322217|MYPOP REV__ENSG00000176182|ENST00000322217|MYPOP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7781066894531 2 481.276909 960.539266 0.093983 4.5232E-05 0.02894 1.3928E-05 0.12292 5.916E-05 481.27692959380755 60.579 1.8293 57.355 56.533 58.362 -3.2237 85 51 2 0 0 0 0.48181 1 11337 11337 0.12781 0 1 1364400 + 42713 18500 28399 28416 42087 42087 0.05741777651417124 SLTRLETQV 9 Unmodified _SLTRLETQV_ 0 0 0 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.68505859375 2 523.795663 1045.57677 0.45085 0.00023616 -2.2189 -0.0011622 -1.768 -0.00092608 523.7964027952426 155.33 0.21162 150.08 149.97 150.18 -5.2526 6 5 2 0 0 0 0.65155 1 30127 30127 28.487 3.813 1 543620 + 42714 19412 28400 28417 42088 42088 0.055808241263775926 SLTRVPWDL 9 Unmodified _SLTRVPWDL_ 0 0 0 REV__ENST00000358442.4_1_5:177309478-177348133:+|nuORF REV__ENST00000358442.4_1_5:177309478-177348133:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7809448242188 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 114.05 1 114.05 113.55 114.55 0 0 0 0 0.23508 1 22431 22431 10.824 0 1 + 42715 14089 28401 28418 42089 42089 0.04757431851612637 SLTSLSLSV 9 Unmodified _SLTSLSLSV_ 0 0 0 ENST00000467638.1_1_7:139757417-139762332:-|nuORF ENST00000467638.1_1_7:139757417-139762332:-|nuORF ENST00000467638.1_1_7:139757417-139762332:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7607116699219 2 453.760758 905.506963 NaN NaN NaN NaN NaN NaN NaN 160.7 1 160.7 160.2 161.2 0 0 0 0 0.17505 1 32269 32269 2.8827 0 1 42716 10154 28402 28419 42090 42090 0.0504294545777384 SLTSLSLSV 9 Unmodified _SLTSLSLSV_ 0 0 0 ENST00000467638.1_1_7:139757417-139762332:-|nuORF ENST00000467638.1_1_7:139757417-139762332:-|nuORF ENST00000467638.1_1_7:139757417-139762332:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76031494140625 2 453.760758 905.506963 NaN NaN NaN NaN NaN NaN NaN 164.62 1 159.57 159.07 160.07 -5.0446 0 0 0 1.6193E-18 1 32120 32120 31.728 4.733 1 42717 10154 28402 28419 42091 42091 0.0504294545777384 SLTSLSLSV 9 Unmodified _SLTSLSLSV_ 0 0 0 ENST00000467638.1_1_7:139757417-139762332:-|nuORF ENST00000467638.1_1_7:139757417-139762332:-|nuORF ENST00000467638.1_1_7:139757417-139762332:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76031494140625 2 453.760758 905.506963 NaN NaN NaN NaN NaN NaN NaN 164.63 1 159.59 159.09 160.09 -5.0446 0 0 0 0.091359 1 32122 32122 39.957 0 1 42718 10154 28402 28419 42092 42092 0.0504294545777384 SLTSLSLSV 9 Unmodified _SLTSLSLSV_ 0 0 0 ENST00000467638.1_1_7:139757417-139762332:-|nuORF ENST00000467638.1_1_7:139757417-139762332:-|nuORF ENST00000467638.1_1_7:139757417-139762332:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.76116943359375 2 453.760758 905.506963 NaN NaN NaN NaN NaN NaN NaN 164.55 1 159.49 158.99 159.99 -5.0648 0 0 0 4.2671E-05 1 32098 32098 26.995 4.3748 1 42719 10154 28402 28419 42093 42093 0.0504294545777384 SLTSSGSSTQ 10 Unmodified _SLTSSGSSTQ_ 0 0 0 REV__nc|ENSG00000153317|Q9ULH1-2|ASAP1 REV__nc|ENSG00000153317|Q9ULH1-2|ASAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72515869140625 2 477.722361 953.430169 0.063938 3.0545E-05 -1.2515 -0.00059785 -1.1875 -0.00056731 477.72170936634257 76.494 0.75463 72.772 72.447 73.202 -3.7227 61 21 4 0 0 0 0.65108 2 14515 14495;14515 16.149 16.149 1 13233000 + 42720 17145 28403 28420 42094;42095 42095 -0.04840897829365076 SLTTENSGN 9 Unmodified _SLTTENSGN_ 0 0 0 ENST00000481082.1_1_1:157512505-157514867:-|nuORF;nc|ENSG00000143297|Q96RD9-4|FCRL5;FCRL5|p.S707Lfs*11|1|0.33|ENSG00000143297|chr1:157524400-157524400|G/-|frameshift_variant;nc|ENSG00000143297|Q96RD9-3|FCRL5;FCRL5|p.H788Sfs*2|1|0.35|ENSG00000143297|chr1:157521170-157521171|-/A|frameshift_variant;ENSG00000143297|ENST00000361835|FCRL5 ENST00000481082.1_1_1:157512505-157514867:-|nuORF ENST00000481082.1_1_1:157512505-157514867:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5333251953125 2 461.709254 921.403954 NaN NaN NaN NaN NaN NaN NaN 26.174 1 24.539 24.039 25.039 -1.6347 0 0 0 0.19649 1 4332 4332 0.37959 0.35031 1 42721 4470 28404 28421 42096 42096 -0.059891670008482834 SLTTLAAAAP 10 Unmodified _SLTTLAAAAP_ 0 0 0 REV__DYTN|p.I115T|1|0.36|ENSG00000232125|chr2:206705826-206705826|A/G|missense_variant REV__DYTN|p.I115T|1|0.36|ENSG00000232125|chr2:206705826-206705826|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2239685058594 2 458.260925 914.507297 -0.0896 -4.106E-05 0.18624 8.5348E-05 0.096643 4.4288E-05 458.26098146193027 48.224 0.52486 45.274 45.016 45.541 -2.9499 26 14 3 0 0 0 0.48338 1 8822 8822 32.305 0 1 1778300 + 42722 13768 28405 28422 42097 42097 0.04662365177603078 SLTTLISLFS 10 Unmodified _SLTTLISLFS_ 0 0 0 REV__nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3 REV__nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2647094726562 2 541.310615 1080.60668 0.18438 9.9805E-05 -3.6307 -0.0019654 -3.4464 -0.0018656 541.3081597200401 146.95 0.31107 141.84 141.65 141.96 -5.1108 12 8 2 0 0 0 0.871 1 28402 28402 3.2813 0 1 9602500 + 42723 18604 28406 28423 42098 42098 0.06959763071699854 SLTTNLLSM 9 Unmodified _SLTTNLLSM_ 0 0 0 REV__ENSG00000156222|ENST00000394573|SLC28A1 REV__ENSG00000156222|ENST00000394573|SLC28A1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2579040527344 2 490.260068 978.505582 NaN NaN NaN NaN NaN NaN NaN 130.55 1 125.91 125.41 126.41 -4.6359 0 0 0 0.21065 1 25726 25726 20.454 1.0146 1 + 42724 17252 28407 28424 42099 42099 0.015469880973682848 SLTVRCWP 8 Unmodified _SLTVRCWP_ 0 0 0 REV__ENST00000471540.5_1_21:46684211-46684493:-|nuORF REV__ENST00000471540.5_1_21:46684211-46684493:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25030517578125 2 481.249837 960.485122 NaN NaN NaN NaN NaN NaN NaN 152 1 147.25 146.75 147.75 -4.7523 0 0 0 0.23107 1 30203 30203 0.25148 0 1 + 42725 22041 28408 28425 42100 42100 0.0032986222820454714 SLTYTESE 8 Unmodified _SLTYTESE_ 0 0 0 REV__nc|ENSG00000131355|Q9BY15-2|ADGRE3 REV__nc|ENSG00000131355|Q9BY15-2|ADGRE3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24432373046875 2 465.208555 928.402557 NaN NaN NaN NaN NaN NaN NaN 92.734 1 88.9 88.4 89.4 -3.8346 0 0 0 0.21486 1 17772 17772 12.532 2.3482 1 + 42726 16067 28409 28426 42101 42101 -0.06450801089613378 SLVAGSFSPP 10 Unmodified _SLVAGSFSPP_ 0 0 0 ENST00000564629.1_1_16:31470274-31471003:-|nuORF ENST00000564629.1_1_16:31470274-31471003:-|nuORF ENST00000564629.1_1_16:31470274-31471003:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25213623046875 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 84.37 1 80.706 80.206 81.206 -3.6641 0 0 0 0.22583 1 16491 16491 13.906 0 1 42727 11345 28410 28427 42102 42102 0.009820786605587273 SLVCCRAV 8 Unmodified _SLVCCRAV_ 0 0 0 ENST00000373178.4_1_1:36559103-36559385:+|nuORF ENST00000373178.4_1_1:36559103-36559385:+|nuORF ENST00000373178.4_1_1:36559103-36559385:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2515869140625 2 425.717316 849.420079 0.41542 0.00017685 1.0089 0.00042952 1.4243 0.00060637 425.71755252277836 108.16 0.38444 104.03 103.77 104.16 -4.135 14 10 2 0 0 0 0.98676 1 20778 20778 15.847 15.847 1 467750 42728 9191 28411 28428 42103 42103 -0.01065455569300866 SLVCCRAV 8 Unmodified _SLVCCRAV_ 0 0 0 ENST00000373178.4_1_1:36559103-36559385:+|nuORF ENST00000373178.4_1_1:36559103-36559385:+|nuORF ENST00000373178.4_1_1:36559103-36559385:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 425.717316 849.420079 -0.65995 -0.00028095 1.7069 0.00072668 1.047 0.00044573 425.71797940763855 108.31 0.59017 103.99 103.55 104.14 -4.32 -0.018764 0.00029028 NaN 15.847 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 934430 42729 9191 28411 28428 -0.01065455569300866 SLVCNHQQ 8 Unmodified _SLVCNHQQ_ 0 0 0 GCFC2|p.V549Sfs*42|1|0.27|ENSG00000005436|chr2:75687872-75687873|-/T|frameshift_variant GCFC2|p.V549Sfs*42|1|0.27|ENSG00000005436|chr2:75687872-75687873|-/T|frameshift_variant GCFC2|p.V549Sfs*42|1|0.27|ENSG00000005436|chr2:75687872-75687873|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649475097656 3 310.14836 927.42325 0.56761 0.00017604 -1.5128 -0.00046919 -0.94517 -0.00029314 310.14787057831916 119.7 0.32788 115.06 114.84 115.17 -4.645 11 8 2 0 0 0 1.0273 1 22954 22954 0.35063 0 1 549740 42730 11843 28412 28429 42104 42104 -0.04336489190939119 SLVCVSKQV 9 Unmodified _SLVCVSKQV_ 0 0 0 REV__nc|ENSG00000105778|Q8NBF6-2|AVL9 REV__nc|ENSG00000105778|Q8NBF6-2|AVL9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7682189941406 2 481.770603 961.526652 NaN NaN NaN NaN NaN NaN NaN 81.88 1 78.041 77.541 78.541 -3.8392 0 0 0 0.21469 1 15549 15549 19.257 1.122 1 + 42731 15018 28413 28430 42105 42105 0.04434998196882134 SLVCVSKQV 9 Unmodified _SLVCVSKQV_ 0 0 0 REV__nc|ENSG00000105778|Q8NBF6-2|AVL9 REV__nc|ENSG00000105778|Q8NBF6-2|AVL9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7684326171875 2 481.770603 961.526652 NaN NaN NaN NaN NaN NaN NaN 81.751 1 78.064 77.564 78.564 -3.6879 0 0 0 0.21844 1 15579 15579 18.146 3.5647 1 + 42732 15018 28413 28430 42106 42106 0.04434998196882134 SLVEAEPVA 9 Unmodified _SLVEAEPVA_ 0 0 0 REV__MAD2L1BP|p.A3V|1|0.37|ENSG00000124688|chr6:43635883-43635883|C/T|missense_variant REV__MAD2L1BP|p.A3V|1|0.37|ENSG00000124688|chr6:43635883-43635883|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23876953125 2 457.745108 913.475663 -0.47318 -0.0002166 0.60526 0.00027705 0.13208 6.0458E-05 457.7453354799359 106.6 1.2181 102.34 101.62 102.84 -4.2638 71 34 4 0 0 0 0.026587 1 20981 20981 85.357 14.223 1 16430000 + 42733 23829 28414 28431 42107 42107 0.015463724236610688 SLVFKVAETAN 11 Unmodified _SLVFKVAETAN_ 0 0 0 ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602816-23603164:-|nuORF ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602816-23603164:-|nuORF ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2689819335938 2 589.824421 1177.63429 0.27199 0.00016042 0.24349 0.00014362 0.51548 0.00030404 589.8246121442747 140.32 0.91129 135.46 134.91 135.82 -4.8557 55 25 3 0 0 0 0.33787 1 27090 27090 7.0341 0 1 6337300 42734 5516;9920 28415 28432 42108 42108 0.052576663319541694 SLVFPGGKKPG 11 Unmodified _SLVFPGGKKPG_ 0 0 0 nc|ENSG00000171649|Q3SY52-3|ZIK1;nc|ENSG00000171649|Q3SY52-2|ZIK1;ENST00000307468.4_1_19:58095687-58102640:+|nuORF;ENSG00000171649|ENST00000597850|ZIK1 nc|ENSG00000171649|Q3SY52-3|ZIK1 nc|ENSG00000171649|Q3SY52-3|ZIK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7932739257812 2 543.818941 1085.62333 NaN NaN NaN NaN NaN NaN NaN 100.42 1 96.123 95.623 96.623 -4.297 0 0 0 0.20277 1 19206 19206 18.146 2.2992 1 42735 6158 28416 28433 42109 42109 0.08394308748324875 SLVGRQFVEPE 11 Unmodified _SLVGRQFVEPE_ 0 0 0 BEST4|p.A347Rfs*2|1|0.13|ENSG00000142959|chr1:44784738-44784739|-/G|frameshift_variant;BEST4|p.A347Lfs*38|1|0.35|ENSG00000142959|chr1:44784739-44784739|G/-|frameshift_variant;ENSG00000142959|ENST00000372207|BEST4 BEST4|p.A347Rfs*2|1|0.13|ENSG00000142959|chr1:44784738-44784739|-/G|frameshift_variant BEST4|p.A347Rfs*2|1|0.13|ENSG00000142959|chr1:44784738-44784739|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.76025390625 2 630.832777 1259.651 NaN NaN NaN NaN NaN NaN NaN 166.95 1 162.06 161.56 162.56 -4.8916 0 0 0 0.21513 1 32770 32770 15.248 5.0979 1 42736 315 28417 28434 42110 42110 0.031561672178895606 SLVHHILLY 9 Unmodified _SLVHHILLY_ 0 0 0 nc|ENSG00000079931|Q6UVY6-2|MOXD1;ENSG00000079931|ENST00000367963|MOXD1 nc|ENSG00000079931|Q6UVY6-2|MOXD1 nc|ENSG00000079931|Q6UVY6-2|MOXD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7874145507812 2 547.821484 1093.62842 NaN NaN NaN NaN NaN NaN NaN 57.29 1 54.114 53.614 54.614 -3.1761 0 0 0 0.23508 1 10677 10677 4.756 0 1 42737 1602 28418 28435 42111 42111 0.08534612610947079 SLVKDMTI 8 Unmodified _SLVKDMTI_ 0 0 0 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75067138671875 2 453.751879 905.489204 NaN NaN NaN NaN NaN NaN NaN 146.35 1 141.35 140.85 141.85 -5 0 0 0 0.18898 1 28319 28319 28.487 1.6032 1 42738 26254 28419 28436 42112 42112 0.03267906931262132 SLVKFLKFL 9 Unmodified _SLVKFLKFL_ 0 0 0 REV__ENST00000361830.7_2_20:57253146-57253287:+|nuORF REV__ENST00000361830.7_2_20:57253146-57253287:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.78759765625 2 547.852253 1093.68995 NaN NaN NaN NaN NaN NaN NaN 138.04 1 133.2 132.7 133.7 -4.84 0 0 0 0.19626 1 26598 26598 0.0033805 0 1 + 42739 20892 28420 28437 42113 42113 0.14685544310236764 SLVKQSPNTL 10 Unmodified _SLVKQSPNTL_ 0 0 0 nc|ENSG00000001460|Q5TH74-2|STPG1;nc|ENSG00000001460|Q5TH74-3|STPG1;ENSG00000001460|ENST00000337248|STPG1;ENST00000497384.1_1_1:24696162-24710359:-|nuORF nc|ENSG00000001460|Q5TH74-2|STPG1 nc|ENSG00000001460|Q5TH74-2|STPG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7838745117188 2 543.811313 1085.60807 0.2382 0.00012953 0.048463 2.6355E-05 0.28666 0.00015589 543.8112893218746 129.62 0.77094 124.99 124.6 125.37 -4.6292 47 21 3 0 0 0 0.070715 1 25561 25561 8.7518 0 1 8964500 42740 955 28421 28438 42114 42114 0.06869397160471635 SLVKQSPNTL 10 Unmodified _SLVKQSPNTL_ 0 0 0 nc|ENSG00000001460|Q5TH74-2|STPG1;nc|ENSG00000001460|Q5TH74-3|STPG1;ENSG00000001460|ENST00000337248|STPG1;ENST00000497384.1_1_1:24696162-24710359:-|nuORF nc|ENSG00000001460|Q5TH74-2|STPG1 nc|ENSG00000001460|Q5TH74-2|STPG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7830810546875 2 543.811313 1085.60807 0.25489 0.00013861 -0.0098281 -5.3446E-06 0.24506 0.00013327 543.8112684268742 129.87 0.78322 125.1 124.71 125.5 -4.7725 52 21 3 0 0 0 0.070715 1 24962 24962 8.7518 0 1 8025900 42741 955 28421 28438 42115 42115 0.06869397160471635 SLVKQWQLK 9 Unmodified _SLVKQWQLK_ 0 0 0 REV__nc|ENSG00000164674|Q4VX76-2|SYTL3 REV__nc|ENSG00000164674|Q4VX76-2|SYTL3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 565.8065795898438 2 565.340041 1128.66553 NaN NaN NaN NaN NaN NaN NaN 171.69 1 166.9 166.4 167.4 -4.7898 0 0 0 0.19638 1 34926 34926 0.37959 0 1 + 42742 17701 28422 28439 42116 42116 0.1063428415668568 SLVKSSSLVK 10 Unmodified _SLVKSSSLVK_ 0 0 0 REV__nc|ENSG00000158486|Q8TD57|DNAH3 REV__nc|ENSG00000158486|Q8TD57|DNAH3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 349.8490905761719 3 349.88513 1046.63356 0.086086 3.012E-05 1.2758 0.00044637 1.3618 0.00047649 349.88545040455347 31.159 0.48911 29.043 28.754 29.243 -2.1167 27 13 3 0 0 0 0.75765 1 5633 5633 3.3196 0.58445 1 1343200 + 42743 17337 28423 28440 42117 42117 0.11210871682919787 SLVKSSSLVK 10 Unmodified _SLVKSSSLVK_ 0 0 0 REV__nc|ENSG00000158486|Q8TD57|DNAH3 REV__nc|ENSG00000158486|Q8TD57|DNAH3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 349.88513 1046.63356 0.086086 3.012E-05 1.2758 0.00044637 1.3618 0.00047649 349.88545040455347 31.159 0.48911 29.043 28.754 29.243 -2.1167 0.070333 8.4941E-05 NaN 3.3196 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1343200 + 42744 17337 28423 28440 0.11210871682919787 SLVKSSSLVK 10 Unmodified _SLVKSSSLVK_ 0 0 0 REV__nc|ENSG00000158486|Q8TD57|DNAH3 REV__nc|ENSG00000158486|Q8TD57|DNAH3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 349.88513 1046.63356 0.31222 0.00010924 0.90148 0.00031541 1.2137 0.00042465 349.8853980099592 30.943 0.56421 28.916 28.599 29.163 -2.0264 -0.056258 -0.00030793 NaN 3.3196 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1385600 + 42745 17337 28423 28440 0.11210871682919787 SLVKSSSLVK 10 Unmodified _SLVKSSSLVK_ 0 0 0 REV__nc|ENSG00000158486|Q8TD57|DNAH3 REV__nc|ENSG00000158486|Q8TD57|DNAH3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 349.88513 1046.63356 -0.17318 -6.0595E-05 1.4156 0.0004953 1.2424 0.00043471 349.885559270681 31.033 0.55939 28.958 28.641 29.201 -2.0743 -0.014075 0.00023174 NaN 3.3196 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1413400 + 42746 17337 28423 28440 0.11210871682919787 SLVLNDTVQY 10 Unmodified _SLVLNDTVQY_ 0 0 0 REV__ENSG00000181790|ENST00000517894|ADGRB1 REV__ENSG00000181790|ENST00000517894|ADGRB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3184814453125 2 576.300778 1150.587 NaN NaN NaN NaN NaN NaN NaN 98.607 1 94.338 93.838 94.838 -4.2692 0 0 0 0.22448 1 18851 18851 23.79 3.3362 1 + 42747 18740 28424 28441 42118 42118 0.01773387060939058 SLVLNNIT 8 Unmodified _SLVLNNIT_ 0 0 0 ENST00000471909.1_1_21:45217249-45223652:+|nuORF;ENST00000467112.5_1_21:45213150-45223652:+|nuORF;ENSG00000160214|ENST00000497547|RRP1 ENST00000471909.1_1_21:45217249-45223652:+|nuORF ENST00000471909.1_1_21:45217249-45223652:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2161865234375 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 80.901 1 77.344 76.844 77.844 -3.557 0 0 0 0.21404 1 15796 15796 13.906 0.86358 1 42748 5239 28425 28442 42119 42119 0.055383825231729134 SLVLNRWFIL 10 Unmodified _SLVLNRWFIL_ 0 0 0 REV__ENST00000216181.9_1_22:36716845-36717844:-|nuORF REV__ENST00000216181.9_1_22:36716845-36717844:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7499389648438 2 630.876791 1259.73903 0.5175 0.00032648 0.49478 0.00031214 1.0123 0.00063862 630.876938688743 142 0.10596 137.13 137.06 137.17 -4.8678 4 2 2 0 0 0 0.90091 1 27384 27384 10.074 0 1 732810 + 42749 20009 28426 28443 42120 42120 0.11954832599190013 SLVLNRWFIL 10 Unmodified _SLVLNRWFIL_ 0 0 0 REV__ENST00000216181.9_1_22:36716845-36717844:-|nuORF REV__ENST00000216181.9_1_22:36716845-36717844:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 630.876791 1259.73903 0.40327 0.00025441 4.1682 0.0026296 4.5715 0.0028841 630.8803870550478 137.19 0.16887 137.19 137.07 137.23 0 0.0304 0.0020198 NaN 10.074 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 4146600 + 42750 20009 28426 28443 0.11954832599190013 SLVLPFLAEY 10 Unmodified _SLVLPFLAEY_ 0 0 0 REV__ENSG00000197563|ENST00000640252|PIGN REV__ENSG00000197563|ENST00000640252|PIGN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3229370117188 2 576.320983 1150.62741 NaN NaN NaN NaN NaN NaN NaN 115.49 1 110.94 110.44 111.44 -4.555 0 0 0 0.22583 1 22173 22173 13.906 0.86358 1 + 42751 19348 28427 28444 42121 42121 0.05812353451369745 SLVLSSAVFR 10 Unmodified _SLVLSSAVFR_ 0 0 0 ENST00000462494.5_1_7:5568599-5569288:-|nuORF ENST00000462494.5_1_7:5568599-5569288:-|nuORF ENST00000462494.5_1_7:5568599-5569288:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21258544921875 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 58.759 1 58.759 58.259 59.259 0 0 0 0 0.22588 1 11250 11250 5.0475 0.15051 1 42752 10084 28428 28445 42122 42122 0.0825400488570267 SLVLVTGGAL 10 Unmodified _SLVLVTGGAL_ 0 0 0 REV__ENST00000332995.11_1_6:13287467-13287647:+|nuORF REV__ENST00000332995.11_1_6:13287467-13287647:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2460632324219 2 465.286943 928.559333 0.11706 5.4466E-05 -0.23576 -0.0001097 -0.1187 -5.523E-05 465.2867728641379 115.39 1.3642 115.39 114.72 116.08 0 64 38 2 0 0 0 0.096811 1 22797 22797 61.357 2.6787 1 5407400 + 42753 20635 28429 28446 42123 42123 0.09219528591370363 SLVLVTGGAL 10 Unmodified _SLVLVTGGAL_ 0 0 0 REV__ENST00000332995.11_1_6:13287467-13287647:+|nuORF REV__ENST00000332995.11_1_6:13287467-13287647:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24212646484375 2 465.286943 928.559333 0.51924 0.0002416 -0.56838 -0.00026446 -0.049143 -2.2866E-05 465.286576869503 119.6 1.1325 114.95 114.39 115.52 -4.645 79 31 3 0 0 0 1.0167 1 22968 22968 18.007 0 1 5347900 + 42754 20635 28429 28446 42124 42124 0.09219528591370363 SLVLVTGGAL 10 Unmodified _SLVLVTGGAL_ 0 0 0 REV__ENST00000332995.11_1_6:13287467-13287647:+|nuORF REV__ENST00000332995.11_1_6:13287467-13287647:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.242919921875 2 465.286943 928.559333 0.39592 0.00018421 -0.48735 -0.00022676 -0.091432 -4.2542E-05 465.2866661929507 119.46 1.285 115 114.26 115.54 -4.467 85 36 3 0 0 0 0.054572 1 23026 23026 108 8.2418 1 5047300 + 42755 20635 28429 28446 42125 42125 0.09219528591370363 SLVNLTNI 8 Unmodified _SLVNLTNI_ 0 0 0 REV__ENST00000399878.7_2_4:25749903-25749993:-|nuORF REV__ENST00000399878.7_2_4:25749903-25749993:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2164306640625 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 81.32 1 77.481 76.981 77.981 -3.8392 0 0 0 0.21486 1 15437 15437 10.074 0 1 + 42756 21347 28430 28447 42126 42126 0.055383825231729134 SLVNTVQL 8 Unmodified _SLVNTVQL_ 0 0 0 REV__nc|ENSG00000118705|P04844-2|RPN2 REV__nc|ENSG00000118705|P04844-2|RPN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2359619140625 2 437.255643 872.496732 -0.12878 -5.6311E-05 0.24918 0.00010895 0.12039 5.2643E-05 437.2556883666659 69.042 0.67051 69.042 68.718 69.389 0 32 18 3 0 0 0 0.16655 1 13392 13392 49.933 11.959 1 2659100 + 42757 15562 28431 28448 42127 42127 0.055383825231729134 SLVNTVQL 8 Unmodified _SLVNTVQL_ 0 0 0 REV__nc|ENSG00000118705|P04844-2|RPN2 REV__nc|ENSG00000118705|P04844-2|RPN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21685791015625 2 437.255643 872.496732 0.24043 0.00010513 -0.097997 -4.285E-05 0.14243 6.228E-05 437.25554187369295 72.379 0.686 68.751 68.371 69.057 -3.6275 39 18 3 0 0 0 0.44108 1 13624 13624 30.637 3.7529 1 4497400 + 42758 15562 28431 28448 42128 42128 0.055383825231729134 SLVPNALDYIR 11 Unmodified _SLVPNALDYIR_ 0 0 0 nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF nc|ENSG00000105618|Q8WWY3-2|PRPF31 nc|ENSG00000105618|Q8WWY3-2|PRPF31 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7758178710938 2 630.85097 1259.68739 NaN NaN NaN NaN NaN NaN NaN 153.27 1 153.27 152.77 153.77 0 0 0 0 0.23087 1 30706 30706 7.609 0.50723 1 42759 12272 28432 28449 42129 42129 0.06793044114579061 SLVQLLPTGHS 11 Unmodified _SLVQLLPTGHS_ 0 0 0 ENST00000252512.13_1_8:21863862-21863988:+|nuORF ENST00000252512.13_1_8:21863862-21863988:+|nuORF ENST00000252512.13_1_8:21863862-21863988:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3189697265625 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 121.76 1 117.21 116.71 117.71 -4.5476 0 0 0 0.22943 1 23999 23999 8.7454 0.15213 1 42760 8225 28433 28450 42130 42130 0.06533086051808823 SLVQQYVTQ 9 Unmodified _SLVQQYVTQ_ 0 0 0 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.271484375 2 533.282389 1064.55022 0.42705 0.00022774 0.043554 2.3227E-05 0.4706 0.00025096 533.2827033400284 73.58 0.87363 69.986 69.489 70.362 -3.594 53 24 4 0 0 0 0.44932 1 14015 14015 22.736 0 1 4877800 + 42761 14261 28434 28451 42131 42131 0.020531352350417365 SLVQRVETI 9 Unmodified _SLVQRVETI_ 0 0 0 ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2 ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.271484375 2 522.806031 1043.59751 -0.32468 -0.00016974 0.9666 0.00050534 0.64192 0.0003356 522.8063144522097 103.68 0.30559 99.462 99.213 99.519 -4.2183 11 8 2 0 0 0 0.82765 1 20337 20337 2.9952 0 1 589170 42762 912 28435 28452 42132 42132 0.07745414506052839 SLVRFSFLL 9 Unmodified _SLVRFSFLL_ 0 0 0 nc|ENSG00000179085|Q9P2X0-2|DPM3 nc|ENSG00000179085|Q9P2X0-2|DPM3 nc|ENSG00000179085|Q9P2X0-2|DPM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2837524414062 2 541.32386 1080.63317 0.5072 0.00027456 -1.9803 -0.001072 -1.4731 -0.0007974 541.3249719727689 158.01 0.10587 152.74 152.69 152.8 -5.2712 4 2 2 0 0 0 0.48644 1 30649 30649 20.454 2.3186 1 382650 42763 12489 28436 28453 42133 42133 0.0960749675371062 SLVSHSLSP 9 Unmodified _SLVSHSLSP_ 0 0 0 REV__ENSG00000160469|ENST00000309383|BRSK1 REV__ENSG00000160469|ENST00000309383|BRSK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2555236816406 2 463.750724 925.486896 -0.15504 -7.19E-05 -0.083754 -3.8841E-05 -0.23879 -0.00011074 463.750661464487 61.786 1.2637 61.786 61.325 62.589 0 116 36 5 0 0 0 0.25702 1 11809 11809 34.102 0 1 245260000 + 42764 17422 28437 28454 42134 42134 0.021171945178025453 SLVSHSLSP 9 Unmodified _SLVSHSLSP_ 0 0 0 REV__ENSG00000160469|ENST00000309383|BRSK1 REV__ENSG00000160469|ENST00000309383|BRSK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2547912597656 2 463.750724 925.486896 -0.041387 -1.9193E-05 -0.25198 -0.00011686 -0.29337 -0.00013605 463.75061363579965 64.654 1.2411 61.656 61.153 62.394 -2.9975 115 35 5 0 0 0 0.1793 3 12459 12459;12542;12555 39.957 0 1 230730000 + 42765 17422 28437 28454 42135;42136;42137 42135 0.021171945178025453 SLVSHSLSP 9 Unmodified _SLVSHSLSP_ 0 0 0 REV__ENSG00000160469|ENST00000309383|BRSK1 REV__ENSG00000160469|ENST00000309383|BRSK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.254638671875 2 463.750724 925.486896 0.18093 8.3907E-05 -0.4435 -0.00020567 -0.26257 -0.00012177 463.7505252073514 65.158 1.6781 61.7 61.192 62.87 -3.4581 134 47 5 0 0 0 0.28819 1 12223 12223 32.305 0 1 210120000 + 42766 17422 28437 28454 42138 42138 0.021171945178025453 SLVSHSLSP 9 Unmodified _SLVSHSLSP_ 0 0 0 REV__ENSG00000160469|ENST00000309383|BRSK1 REV__ENSG00000160469|ENST00000309383|BRSK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25482177734375 2 463.750724 925.486896 0.30067 0.00013944 -0.50047 -0.00023209 -0.1998 -9.2656E-05 463.7505042894462 64.922 1.6165 61.638 61.103 62.719 -3.2832 141 46 5 0 0 0 0.1793 3 12198 12152;12198;12240 39.957 0 1 210300000 + 42767 17422 28437 28454 42139;42140;42141 42140 0.021171945178025453 SLVSLALNI 9 Unmodified _SLVSLALNI_ 0 0 0 ENSG00000152661|ENST00000282561|GJA1 ENSG00000152661|ENST00000282561|GJA1 ENSG00000152661|ENST00000282561|GJA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2460632324219 2 465.286943 928.559333 0.11706 5.4466E-05 -0.23576 -0.0001097 -0.1187 -5.523E-05 465.2867728641379 115.39 1.3642 115.39 114.72 116.08 0 64 38 2 0 0 0 0.10537 1 22794 22794 10.899 3.4219 1 5407400 42768 4936 28438 28455 42142 42142 0.09219528591347625 SLVSTISSATV 11 Unmodified _SLVSTISSATV_ 0 0 0 REV__ENSG00000231396|ENST00000417945|USP17L10 REV__ENSG00000231396|ENST00000417945|USP17L10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2872314453125 2 532.795329 1063.5761 0.4508 0.00024018 0.67845 0.00036147 1.1292 0.00060166 532.7955891228833 47.302 0.52493 47.302 46.98 47.505 0 24 14 2 0 0 0 0.53231 1 8915 8915 21.537 1.1224 1 1520300 + 42769 19746 28439 28456 42143 42143 0.04685984686648226 SLVTSEGTKLD 11 Unmodified _SLVTSEGTKLD_ 0 0 0 REV__nc|ENSG00000099260|Q9NP74-3|PALMD REV__nc|ENSG00000099260|Q9NP74-3|PALMD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.333740234375 2 575.303518 1148.59248 0.12344 7.1017E-05 0.88992 0.00051197 1.0134 0.00058299 575.3036456455652 49.967 0.50482 46.968 46.798 47.303 -2.999 22 14 3 0 0 0 0.67257 1 9158 9158 13.615 2.8154 1 773730 + 42770 14632 28440 28457 42144 42144 0.02413065852761065 SLVVATLAT 9 Unmodified _SLVVATLAT_ 0 0 0 REV__ENST00000609041.1_1_20:60581499-60581991:-|nuORF REV__ENST00000609041.1_1_20:60581499-60581991:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2151184082031 2 437.765843 873.517133 0.1435 6.2818E-05 0.026464 1.1585E-05 0.16996 7.4403E-05 437.76575350525525 127.74 0.76672 122.94 122.59 123.36 -4.7958 46 21 3 0 0 0 0.74655 1 24562 24562 15.847 0 1 4966100 + 42771 16025 28441 28458 42145 42145 0.0753155318300287 SLVVFCTKW 9 Unmodified _SLVVFCTKW_ 0 0 0 REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2742919921875 2 541.788795 1081.56304 0.29653 0.00016066 0.90525 0.00049045 1.2018 0.00065111 541.7888831125855 145.98 0.14038 141.29 141.19 141.33 -4.6868 5 3 2 0 0 0 0.84208 1 28940 28940 1.6526 0 1 1802500 + 42772 15500 28442 28459 42146 42146 0.025518750935589196 SLVVYYENG 9 Unmodified _SLVVYYENG_ 0 0 0 tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1 tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1 tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2569580078125 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 47.478 1 47.478 46.978 47.978 0 0 0 0 0.21065 1 8953 8953 20.454 3.5113 1 42773 26464 28443 28460 42147 42147 -0.022422425476406715 SLWADLPL 8 Unmodified _SLWADLPL_ 0 0 0 REV__ENST00000461304.5_1_20:428607-428664:-|nuORF REV__ENST00000461304.5_1_20:428607-428664:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22808837890625 2 457.752736 913.490919 NaN NaN NaN NaN NaN NaN NaN 67.056 1 63.559 63.059 64.059 -3.4965 0 0 0 0.23366 1 12577 12577 0.0082765 0 1 + 42774 21893 28444 28461 42148 42148 0.030712840115256768 SLWAEPKV 8 Unmodified _SLWAEPKV_ 0 0 0 REV__nc|ENSG00000158488|P15812-10|CD1E REV__nc|ENSG00000158488|P15812-10|CD1E MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24847412109375 2 465.258185 928.501818 -0.044582 -2.0742E-05 0.10502 4.8863E-05 0.060443 2.8121E-05 465.25825872414526 53.367 0.60969 50.272 49.934 50.544 -3.0954 35 17 3 0 0 0 0.73426 1 9807 9807 9.3474 1.4373 1 2401000 + 42775 13326 28445 28462 42149 42149 0.03470686385810495 SLWARAPD 8 Unmodified _SLWARAPD_ 0 0 0 ENST00000583655.5_1_17:73127274-73127514:-|nuORF ENST00000583655.5_1_17:73127274-73127514:-|nuORF ENST00000583655.5_1_17:73127274-73127514:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2391357421875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 43.177 1 43.177 42.677 43.677 0 0 0 0 0.21171 1 8088 8088 15.847 2.3393 1 42776 11517 28446 28463 42150 42150 0.00036345066178000707 SLWARAPD 8 Unmodified _SLWARAPD_ 0 0 0 ENST00000583655.5_1_17:73127274-73127514:-|nuORF ENST00000583655.5_1_17:73127274-73127514:-|nuORF ENST00000583655.5_1_17:73127274-73127514:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23883056640625 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 49.426 1 49.426 48.926 49.926 0 0 0 0 0.21171 1 9347 9347 15.847 2.3393 1 42777 11517 28446 28463 42151 42151 0.00036345066178000707 SLWARAPD 8 Unmodified _SLWARAPD_ 0 0 0 ENST00000583655.5_1_17:73127274-73127514:-|nuORF ENST00000583655.5_1_17:73127274-73127514:-|nuORF ENST00000583655.5_1_17:73127274-73127514:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2378845214844 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 98.218 1 94.261 93.761 94.761 -3.9564 0 0 0 0.21486 1 18851 18851 10.824 0.64053 1 42778 11517 28446 28463 42152 42152 0.00036345066178000707 SLWCYHDTGY 10 Unmodified _SLWCYHDTGY_ 0 0 0 REV__ENSG00000135298|ENST00000370598|ADGRB3 REV__ENSG00000135298|ENST00000370598|ADGRB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7542724609375 2 622.755681 1243.49681 NaN NaN NaN NaN NaN NaN NaN 39.449 1 39.449 38.949 39.949 0 0 0 0 0.22588 1 7323 7323 3.5965 0.31518 1 + 42779 16256 28447 28464 42153 42153 -0.1151998553912108 SLWEDTMCLY 10 Unmodified _SLWEDTMCLY_ 0 0 0 REV__BLMH|p.F415L|1|0.5|ENSG00000108578|chr17:30249140-30249140|G/T|missense_variant REV__BLMH|p.F415L|1|0.5|ENSG00000108578|chr17:30249140-30249140|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.752197265625 2 630.7674 1259.52025 NaN NaN NaN NaN NaN NaN NaN 123 1 118.42 117.92 118.92 -4.5757 0 0 0 0.22588 1 24248 24248 6.7232 1.9672 1 + 42780 13196 28448 28465 42154 42154 -0.09913307816805172 SLWEDTMCLY 10 Unmodified _SLWEDTMCLY_ 0 0 0 REV__BLMH|p.F415L|1|0.5|ENSG00000108578|chr17:30249140-30249140|G/T|missense_variant REV__BLMH|p.F415L|1|0.5|ENSG00000108578|chr17:30249140-30249140|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7688598632812 2 630.7674 1259.52025 NaN NaN NaN NaN NaN NaN NaN 123.1 1 118.53 118.03 119.03 -4.5757 0 0 0 0.22588 1 24269 24269 6.7232 2.7788 1 + 42781 13196 28448 28465 42155 42155 -0.09913307816805172 SLWEHCPA 8 Unmodified _SLWEHCPA_ 0 0 0 REV__ENSG00000107872|ENST00000369956|FBXL15 REV__ENSG00000107872|ENST00000369956|FBXL15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1705017089844 3 314.809456 941.406537 -0.21179 -6.6673E-05 -4.3097 -0.0013567 -4.5215 -0.0014234 314.80664398312217 105.33 0.49732 105.33 105.14 105.64 0 19 13 2 0 0 0 0.86089 1 20674 20674 1.6526 0.17072 1 800700 + 42782 15096 28449 28466 42156 42156 -0.0665099007688923 SLWERYLG 8 Unmodified _SLWERYLG_ 0 0 0 REV__nc|ENSG00000150281|Q16619-2|CTF1 REV__nc|ENSG00000150281|Q16619-2|CTF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.21246337890625 3 341.846787 1022.51853 -0.6654 -0.00022746 0.19718 6.7407E-05 -0.46821 -0.00016006 341.84689344929865 59.217 0.39024 59.217 58.969 59.359 0 16 10 2 0 0 0 1.0265 1 11352 11352 1.6526 0 1 864090 + 42783 17026 28450 28467 42157 42157 0.008171872717639417 SLWESLSV 8 Unmodified _SLWESLSV_ 0 0 0 REV__UTRN|p.A1554V|1|0.39|ENSG00000152818|chr6:144499324-144499324|C/T|missense_variant REV__UTRN|p.A1554V|1|0.39|ENSG00000152818|chr6:144499324-144499324|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2383728027344 2 460.739825 919.465098 -0.093544 -4.31E-05 0.32001 0.00014744 0.22647 0.00010434 460.7398981391748 60.177 0.66338 60.177 59.859 60.522 0 42 18 3 0 0 0 0.81042 1 11542 11542 23.148 3.8914 1 5163200 + 42784 25529 28451 28468 42158 42158 0.002143897692576502 SLWFKEIY 8 Unmodified _SLWFKEIY_ 0 0 0 ENST00000448120.6_1_12:3050000-3050282:+|nuORF ENST00000448120.6_1_12:3050000-3050282:+|nuORF ENST00000448120.6_1_12:3050000-3050282:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79345703125 2 543.286943 1084.55933 0.61951 0.00033657 -1.2759 -0.00069316 -0.65635 -0.00035659 543.2862761657457 121.16 1.4759 116.47 115.69 117.16 -4.6873 123 41 4 0 0 0 0.96284 1 23121 23121 8.5933 1.304 1 16645000 42785 9953 28452 28469 42159 42159 0.020435285913663392 SLWGKRLQY 9 Unmodified _SLWGKRLQY_ 0 0 0 ENST00000253122.9_1_X:152961590-152961851:+|nuORF ENST00000253122.9_1_X:152961590-152961851:+|nuORF ENST00000253122.9_1_X:152961590-152961851:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3248291015625 2 575.822015 1149.62948 -0.081686 -4.7037E-05 3.286 0.0018922 3.2043 0.0018451 575.8261811947118 74.424 0.17648 71.06 70.951 71.127 -3.3643 5 4 2 0 0 0 0.46598 1 14515 14515 0.40827 0.28045 1 399750 42786 8234 28453 28470 42160 42160 0.060648269798548426 SLWKENYF 8 Unmodified _SLWKENYF_ 0 0 0 REV__ENST00000483698.5_1_2:122513280-122515022:+|nuORF REV__ENST00000483698.5_1_2:122513280-122515022:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7962036132812 2 543.766374 1085.5182 NaN NaN NaN NaN NaN NaN NaN 153.57 1 148.3 147.8 148.8 -5.2669 0 0 0 0.21486 1 29768 29768 10.183 0.83596 1 + 42787 22203 28454 28471 42161 42161 -0.021142324481161268 SLWKVNIEV 9 Unmodified _SLWKVNIEV_ 0 0 0 REV__ENST00000399501.2_10:47595144-47595348:+|nuORF REV__ENST00000399501.2_10:47595144-47595348:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7815551757812 2 544.310949 1086.60735 0.11842 6.4459E-05 -0.49699 -0.00027052 -0.37857 -0.00020606 544.310481718362 76.16 0.7225 72.437 71.964 72.686 -3.7227 37 20 3 0 0 0 0.77734 1 14443 14443 1.1933 0 1 3231800 + 42788 21343 28455 28472 42162 42162 0.06750602511419856 SLWQTYRWY 9 Unmodified _SLWQTYRWY_ 0 0 0 REV__ENST00000369578.6_1_6:87925633-87925750:+|nuORF REV__ENST00000369578.6_1_6:87925633-87925750:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 434.914794921875 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 39.957 1 39.957 39.457 40.457 0 0 0 0 0.23508 1 7424 7424 2.7352 0.30041 1 + 42789 20962 28456 28473 42163 42163 -0.019437807453869027 SLWRRYSEFE 10 Unmodified _SLWRRYSEFE_ 0 0 0 ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4 ENST00000473417.5_1_3:125188296-125239016:-|nuORF ENST00000473417.5_1_3:125188296-125239016:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2239685058594 3 458.226326 1371.65715 NaN NaN NaN NaN NaN NaN NaN 48.195 1 45.246 44.746 45.746 -2.9499 0 0 0 2.8426 1 8818 8818 0.013265 0 1 42790 2796 28457 28474 42164 42164 -0.013813145505764624 SLYAIFFSF 9 Unmodified _SLYAIFFSF_ 0 0 0 ENST00000367097.7_1_6:158734381-158734558:+|nuORF ENST00000367097.7_1_6:158734381-158734558:+|nuORF ENST00000367097.7_1_6:158734381-158734558:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7671508789062 2 547.781493 1093.54843 NaN NaN NaN NaN NaN NaN NaN 120.91 1 116.38 115.88 116.88 -4.5221 0 0 0 0.23508 1 23834 23834 11.64 0.81637 1 42791 9057 28458 28475 42165 42165 0.005401262170835253 SLYDFEEEEDR 11 Unmodified _SLYDFEEEEDR_ 0 0 0 REV__ENSG00000182224|ENST00000332439|CYB5D1 REV__ENSG00000182224|ENST00000332439|CYB5D1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 477.8681945800781 3 477.868533 1430.58377 NaN NaN NaN NaN NaN NaN NaN 17.359 1 16.087 15.587 16.587 -1.2722 0 0 0 0.23698 1 2552 2552 0.45452 0 1 + 42792 18768 28459 28476 42166 42166 -0.11429952574371782 SLYDQAEKL 9 Unmodified _SLYDQAEKL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2861938476562 2 533.774396 1065.53424 -0.028244 -1.5076E-05 0.28398 0.00015158 0.25574 0.00013651 533.7745200064454 89.826 0.61997 89.826 89.495 90.115 0 29 17 2 0 0 0 0.39339 1 17533 17533 43.772 13.136 1 3863500 42793 2466 28460 28477 42167 42167 0.004094289981367183 SLYDQAEKL 9 Unmodified _SLYDQAEKL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2830810546875 2 533.774396 1065.53424 0.094133 5.0246E-05 0.60981 0.0003255 0.70395 0.00037575 533.7748187270058 93.857 0.58633 89.867 89.521 90.107 -3.9907 35 16 3 0 0 0 0.77644 1 18414 18414 20.415 0 1 5364400 42794 2466 28460 28477 42168 42168 0.004094289981367183 SLYDQAEKL 9 Unmodified _SLYDQAEKL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27490234375 2 533.774396 1065.53424 0.55754 0.0002976 0.28416 0.00015168 0.8417 0.00044928 533.7745312569506 94.026 0.58398 89.882 89.517 90.101 -4.1435 39 16 3 0 0 0 0.078741 1 17931 17931 70.332 26.474 1 4573600 42795 2466 28460 28477 42169 42169 0.004094289981367183 SLYDQAEKL 9 Unmodified _SLYDQAEKL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.283203125 2 533.774396 1065.53424 0.10797 5.763E-05 0.41115 0.00021946 0.51912 0.00027709 533.7746425941509 93.735 0.52013 89.891 89.608 90.128 -3.844 30 14 3 0 0 0 0.080602 1 17972 17972 71.708 25.968 1 4077300 42796 2466 28460 28477 42170 42170 0.004094289981367183 SLYDVPVGA 9 Unmodified _SLYDVPVGA_ 0 0 0 ENST00000379312.7_3_16:67562815-67572402:+|nuORF;ENST00000566920.5_3_16:67563967-67572402:+|nuORF;ENST00000565176.5_3_16:67565474-67572402:+|nuORF;ENST00000566559.5_3_16:67572255-67572402:+|nuORF;ENST00000540839.7_3_16:67563547-67572402:+|nuORF ENST00000379312.7_3_16:67562815-67572402:+|nuORF ENST00000379312.7_3_16:67562815-67572402:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5236511230469 2 460.739825 919.465098 0.016777 7.7297E-06 0.17104 7.8806E-05 0.18782 8.6536E-05 460.73989711417875 116.58 0.83743 112.09 111.65 112.49 -4.486 56 23 3 0 0 0 0.41781 1 22941 22941 24.674 6.5389 1 8443100 42797 9294 28461 28478 42171 42171 0.002143897692462815 SLYDVPVGA 9 Unmodified _SLYDVPVGA_ 0 0 0 ENST00000379312.7_3_16:67562815-67572402:+|nuORF;ENST00000566920.5_3_16:67563967-67572402:+|nuORF;ENST00000565176.5_3_16:67565474-67572402:+|nuORF;ENST00000566559.5_3_16:67572255-67572402:+|nuORF;ENST00000540839.7_3_16:67563547-67572402:+|nuORF ENST00000379312.7_3_16:67562815-67572402:+|nuORF ENST00000379312.7_3_16:67562815-67572402:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2325439453125 2 460.739825 919.465098 0.48162 0.0002219 -0.23339 -0.00010753 0.24822 0.00011437 460.7396257841434 116.4 0.77782 112.05 111.7 112.48 -4.3585 55 21 3 0 0 0 0.18739 1 22414 22414 53.576 15.424 1 6769700 42798 9294 28461 28478 42172 42172 0.002143897692462815 SLYDVPVGA 9 Unmodified _SLYDVPVGA_ 0 0 0 ENST00000379312.7_3_16:67562815-67572402:+|nuORF;ENST00000566920.5_3_16:67563967-67572402:+|nuORF;ENST00000565176.5_3_16:67565474-67572402:+|nuORF;ENST00000566559.5_3_16:67572255-67572402:+|nuORF;ENST00000540839.7_3_16:67563547-67572402:+|nuORF ENST00000379312.7_3_16:67562815-67572402:+|nuORF ENST00000379312.7_3_16:67562815-67572402:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.739825 919.465098 0.19826 9.1346E-05 0.091576 4.2192E-05 0.28983 0.00013354 460.7397949141571 111.82 0.77112 111.82 111.48 112.25 0 -0.21748 7.6336E-05 NaN 53.576 45 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5650600 42799 9294 28461 28478 0.002143897692462815 SLYEFVQNS 9 Unmodified _SLYEFVQNS_ 0 0 0 REV__GIN1|p.L518F|1|0.27|ENSG00000145723|chr5:103087915-103087915|G/A|missense_variant REV__GIN1|p.L518F|1|0.27|ENSG00000145723|chr5:103087915-103087915|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7840576171875 2 543.758746 1085.50294 NaN NaN NaN NaN NaN NaN NaN 135.3 1 130.4 129.9 130.9 -4.8951 0 0 0 0.22962 1 25988 25988 14.838 0 1 + 42800 23575 28462 28479 42173 42173 -0.03639144035946629 SLYEIFMY 8 Unmodified _SLYEIFMY_ 0 0 0 ENSG00000196944|ENST00000366473|OR2T4;nc|ENSG00000196944|Q8NH00|OR2T4 ENSG00000196944|ENST00000366473|OR2T4 ENSG00000196944|ENST00000366473|OR2T4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2640380859375 2 533.251711 1064.48887 NaN NaN NaN NaN NaN NaN NaN 153.34 1 153.34 152.84 153.84 0 0 0 0 0.21486 1 30722 30722 5.7604 0 1 42801 7318 28463 28480 42174 42174 -0.040795127885985494 SLYFTDNG 8 Unmodified _SLYFTDNG_ 0 0 0 MUC4|p.I4367T|1|0.17|ENSG00000145113|chr3:195771794-195771794|A/G|missense_variant;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4 MUC4|p.I4367T|1|0.17|ENSG00000145113|chr3:195771794-195771794|A/G|missense_variant MUC4|p.I4367T|1|0.17|ENSG00000145113|chr3:195771794-195771794|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2374267578125 2 458.705983 915.397412 NaN NaN NaN NaN NaN NaN NaN 134.72 1 129.9 129.4 130.4 -4.8175 0 0 0 0.23749 1 25936 25936 0.0082765 0 1 42802 4594 28464 28481 42175 42175 -0.06367060161551308 SLYGFSLLSV 10 Unmodified _SLYGFSLLSV_ 0 0 0 REV__ENSG00000183876|ENST00000328668|ARSI REV__ENSG00000183876|ENST00000328668|ARSI MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.776611328125 2 543.297507 1084.58046 0.40422 0.00021961 0.17234 9.3634E-05 0.57656 0.00031324 543.297456199691 160.59 0.70088 155.79 155.48 156.18 -4.7952 34 19 3 0 0 0 0.093758 1 31955 31955 62.573 3.2043 1 3779900 + 42803 18873 28465 28482 42176 42176 0.04155493900225338 SLYGFSLLSV 10 Unmodified _SLYGFSLLSV_ 0 0 0 REV__ENSG00000183876|ENST00000328668|ARSI REV__ENSG00000183876|ENST00000328668|ARSI MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.297507 1084.58046 0.20493 0.00011134 0.44916 0.00024403 0.65409 0.00035536 543.2975856652276 161.11 0.49942 155.88 155.58 156.08 -5.2299 0.074274 0.00046202 NaN 62.573 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2140300 + 42804 18873 28465 28482 0.04155493900225338 SLYGGDSKFL 10 Unmodified _SLYGGDSKFL_ 0 0 0 ENSG00000103544|ENST00000417362|VPS35L;nc|ENSG00000103544|Q7Z3J2-2|VPS35L ENSG00000103544|ENST00000417362|VPS35L ENSG00000103544|ENST00000417362|VPS35L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7783203125 2 543.776939 1085.53933 0.44033 0.00023944 -0.76069 -0.00041365 -0.32036 -0.0001742 543.7769220983378 118.14 0.34111 113.64 113.46 113.8 -4.502 14 9 2 0 0 0 0.086838 2 23323 23277;23323 43.982 36.896 1 2052200 42805 2196 28466 28483 42177;42178 42178 -2.2671392343909247E-05 SLYGGDSKFL 10 Unmodified _SLYGGDSKFL_ 0 0 0 ENSG00000103544|ENST00000417362|VPS35L;nc|ENSG00000103544|Q7Z3J2-2|VPS35L ENSG00000103544|ENST00000417362|VPS35L ENSG00000103544|ENST00000417362|VPS35L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7788696289062 2 543.776939 1085.53933 0.46089 0.00025062 -0.88814 -0.00048295 -0.42724 -0.00023232 543.7770991617006 118.12 0.57185 113.51 113.21 113.78 -4.6106 21 15 2 0 0 0 0.086838 1 22707 22707 31.636 24.159 1 1839300 42806 2196 28466 28483 42179 42179 -2.2671392343909247E-05 SLYGGDSKFL 10 Unmodified _SLYGGDSKFL_ 0 0 0 ENSG00000103544|ENST00000417362|VPS35L;nc|ENSG00000103544|Q7Z3J2-2|VPS35L ENSG00000103544|ENST00000417362|VPS35L ENSG00000103544|ENST00000417362|VPS35L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7770385742188 2 543.776939 1085.53933 0.52399 0.00028493 -0.4501 -0.00024475 0.073888 4.0179E-05 543.77669083001 117.96 0.53789 113.55 113.24 113.78 -4.4088 26 14 2 0 0 0 0.15354 1 22724 22724 31.636 19.395 1 1190600 42807 2196 28466 28483 42180 42180 -2.2671392343909247E-05 SLYGGTITI 9 Unmodified _SLYGGTITI_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 462.2340393066406 2 462.755475 923.496398 0.17709 8.195E-05 0.047878 2.2156E-05 0.22497 0.00010411 462.7554532575544 141.05 0.9214 141.05 140.61 141.54 0 63 26 3 0 0 0 0.074448 1 28163 28163 26.995 17.451 1 28908000 42808 5064 28467 28484 42181 42181 0.03158962803343002 SLYGGTITI 9 Unmodified _SLYGGTITI_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 462.73809814453125 2 462.755475 923.496398 0.0061208 2.8324E-06 0.20213 9.3537E-05 0.20825 9.6369E-05 462.7555158264669 146.04 0.8279 141.36 140.98 141.81 -4.6868 56 23 3 0 0 0 0.0022766 1 28927 28927 67.187 55.438 1 23106000 42809 5064 28467 28484 42182 42182 0.03158962803343002 SLYGGTITI 9 Unmodified _SLYGGTITI_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 462.755475 923.496398 0.068508 3.1702E-05 0.23294 0.00010779 0.30144 0.00013949 462.7555012953695 146.49 0.96021 141.37 140.96 141.93 -5.1108 0.12668 0.00012759 NaN 67.187 75 27 4 NaN NaN NaN NaN 0 NaN NaN 0 27785000 42810 5064 28467 28484 0.03158962803343002 SLYGGTITI 9 Unmodified _SLYGGTITI_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 462.755475 923.496398 0.31675 0.00014658 -0.069199 -3.2022E-05 0.24755 0.00011456 462.7553945298688 146.21 0.83385 141.21 140.91 141.75 -5 -0.039674 -0.00015204 NaN 67.187 67 23 4 NaN NaN NaN NaN 0 NaN NaN 0 28951000 42811 5064 28467 28484 0.03158962803343002 SLYHPQPC 8 Unmodified _SLYHPQPC_ 0 0 0 ENST00000589123.5_2_19:3465565-3466177:+|nuORF ENST00000589123.5_2_19:3465565-3466177:+|nuORF ENST00000589123.5_2_19:3465565-3466177:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1445007324219 3 315.481339 943.422187 -0.23989 -7.568E-05 1.0684 0.00033705 0.82848 0.00026137 315.48161827766603 97.914 0.87117 93.816 93.254 94.125 -4.0978 31 24 2 0 0 0 0.89225 1 19222 19222 1.7423 1.7423 1 2017500 42812 11581 28468 28485 42183 42183 -0.05178703559840869 SLYIITCGYF 10 Unmodified _SLYIITCGYF_ 0 0 0 REV__ENST00000485364.1_1_20:31136574-31172692:-|nuORF REV__ENST00000485364.1_1_20:31136574-31172692:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.250244140625 2 590.291368 1178.56818 NaN NaN NaN NaN NaN NaN NaN 160.02 1 160.02 159.52 160.52 0 0 0 0 0.22588 1 32131 32131 10.074 2.1638 1 + 42813 22220 28469 28486 42184 42184 -0.013958658344563446 SLYKGLLSV 9 Unmodified _SLYKGLLSV_ 0 0 0 RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant;ENSG00000197275|ENST00000336148|RAD54B RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2716064453125 2 490.294768 978.574983 0.19001 9.3162E-05 0.34603 0.00016966 0.53604 0.00026282 490.29467488329317 136.91 0.6834 136.91 136.66 137.34 0 28 19 2 0 0 0 0.067911 2 27149 27149;27180 47.987 33.001 1 4620200 42814 7349 28470 28487 42185;42186 42185 0.0848381510844547 SLYKGLLSV 9 Unmodified _SLYKGLLSV_ 0 0 0 RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant;ENSG00000197275|ENST00000336148|RAD54B RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26556396484375 2 490.294768 978.574983 0.15803 7.748E-05 0.064008 3.1383E-05 0.22204 0.00010886 490.29476573354884 141.34 0.7278 136.69 136.26 136.99 -4.6493 35 20 2 0 0 0 0.13904 3 27865 27862;27865;27965 45.74 21.853 1 5114300 42815 7349 28470 28487 42187;42188;42189 42188 0.0848381510844547 SLYKGLLSV 9 Unmodified _SLYKGLLSV_ 0 0 0 RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant;ENSG00000197275|ENST00000336148|RAD54B RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2672119140625 2 490.294768 978.574983 0.17985 8.8179E-05 0.055899 2.7407E-05 0.23575 0.00011559 490.29466862402774 141.65 0.76752 136.66 136.27 137.04 -4.9877 34 21 2 0 0 0 0.075017 5 27247 27242;27247;27291;27318;27322 63.227 19.369 1 3948900 42816 7349 28470 28487 42190;42191;42192;42193;42194 42191 0.0848381510844547 SLYKGLLSV 9 Unmodified _SLYKGLLSV_ 0 0 0 RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant;ENSG00000197275|ENST00000336148|RAD54B RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant RAD54B|p.F714Lfs*5|1|0.29|ENSG00000197275|chr8:94380250-94380250|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27587890625 2 490.294768 978.574983 0.035434 1.7373E-05 0.27872 0.00013666 0.31416 0.00015403 490.2947815189751 141.55 0.70114 136.68 136.36 137.06 -4.8678 43 19 3 0 0 0 0.048406 3 27326 27278;27326;27353 71.708 23.959 1 3946900 42817 7349 28470 28487 42195;42196;42197 42196 0.0848381510844547 SLYNPLSY 8 Unmodified _SLYNPLSY_ 0 0 0 REV__nc|ENSG00000138119|Q9NZM1-5|MYOF REV__nc|ENSG00000138119|Q9NZM1-5|MYOF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7415466308594 2 478.739825 955.465098 NaN NaN NaN NaN NaN NaN NaN 120.04 1 115.58 115.08 116.08 -4.467 0 0 0 0.21039 1 23109 23109 16.942 2.104 1 + 42818 16440 28471 28488 42198 42198 -0.014416102307677647 SLYPFLALID 10 Unmodified _SLYPFLALID_ 0 0 0 REV__ENSG00000180432|ENST00000316161|CYP8B1 REV__ENSG00000180432|ENST00000316161|CYP8B1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3314208984375 2 576.320983 1150.62741 NaN NaN NaN NaN NaN NaN NaN 147.68 1 142.97 142.47 143.47 -4.7095 0 0 0 0.22583 1 29310 29310 13.906 0.86358 1 + 42819 18688 28472 28489 42199 42199 0.05812353451369745 SLYQVLASV 9 Unmodified _SLYQVLASV_ 0 0 0 ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2579040527344 2 490.276575 978.538597 0.19247 9.4366E-05 -0.15521 -7.6096E-05 0.037263 1.8269E-05 490.2763969812373 144.96 0.86562 144.96 144.61 145.48 0 37 24 2 0 0 0 0.17734 2 28912 28907;28912 40.239 0 1 4469700 42820 5513 28473 28490 42200;42201 42201 0.04846938211710494 SLYRDIMEQPG 11 Unmodified _SLYRDIMEQPG_ 0 0 0 REV__nc|ENSG00000110514|Q8WXG6-6|MADD REV__nc|ENSG00000110514|Q8WXG6-6|MADD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21575927734375 3 436.879939 1307.61799 0.14508 6.3384E-05 -0.77066 -0.00033668 -0.62557 -0.0002733 436.8792909318269 34.731 0.59203 32.478 32.116 32.708 -2.2527 21 16 2 0 0 0 0.80907 1 6073 6073 2.4348 0 1 506700 + 42821 15205 28474 28491 42202 42202 -0.02351782896471377 SLYRFTTI 8 Unmodified _SLYRFTTI_ 0 0 0 ENST00000427755.2_1_11:33037501-33047701:+|nuORF;ENST00000532078.1_1_11:33037501-33049388:+|nuORF;DEPDC7|p.F420Lfs*11|1|0.37|ENSG00000121690|chr11:33032786-33032786|T/-|frameshift_variant;nc|ENSG00000121690|Q96QD5-2|DEPDC7;ENSG00000121690|ENST00000241051|DEPDC7 ENST00000427755.2_1_11:33037501-33047701:+|nuORF ENST00000427755.2_1_11:33037501-33047701:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.1860656738281 3 334.18692 999.538931 NaN NaN NaN NaN NaN NaN NaN 93.175 1 89.331 88.831 89.831 -3.844 0 0 0 0.21486 1 17860 17860 1.6526 0 1 42822 819 28475 28492 42203 42203 0.03914357931569157 SLYRNNLY 8 Unmodified _SLYRNNLY_ 0 0 0 REV__ENST00000463863.5_1_3:150264547-150276361:+|nuORF REV__ENST00000463863.5_1_3:150264547-150276361:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2821655273438 2 521.769448 1041.52434 -0.37903 -0.00019776 0.50115 0.00026149 0.12213 6.3721E-05 521.7696465337839 88.102 0.4579 84.107 83.833 84.291 -3.9953 21 12 2 0 0 0 1.0095 1 16811 16811 2.5775 2.5775 1 1336600 + 42823 21928 28476 28493 42204 42204 0.005242857834218739 SLYSALRWR 9 Unmodified _SLYSALRWR_ 0 0 0 REV__ENSG00000180921|ENST00000388913|FAM83H REV__ENSG00000180921|ENST00000388913|FAM83H MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3167724609375 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 116.31 1 116.31 115.81 116.81 0 0 0 0 0.19652 1 22902 22902 0.029283 0 1 + 42824 18706 28477 28494 42205 42205 0.055439428370846144 SLYSALRWR 9 Unmodified _SLYSALRWR_ 0 0 0 REV__ENSG00000180921|ENST00000388913|FAM83H REV__ENSG00000180921|ENST00000388913|FAM83H MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3292236328125 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 116.55 1 116.55 116.05 117.05 0 0 0 0 0.19674 1 22951 22951 0.12781 0.06395 1 + 42825 18706 28477 28494 42206 42206 0.055439428370846144 SLYSVRSAP 9 Unmodified _SLYSVRSAP_ 0 0 0 REV__ENST00000447668.2_1_2:122407746-122408084:+|nuORF REV__ENST00000447668.2_1_2:122407746-122408084:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25384521484375 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 0.60061 1 11266 11266 13.042 0 1 39769000 + 42826 21773 28478 28495 42207 42207 0.02332883409144415 SLYTIWLQK 9 Unmodified _SLYTIWLQK_ 0 0 0 ENSG00000151779|ENST00000281513|NBAS;nc|ENSG00000151779|A2RRP1-2|NBAS ENSG00000151779|ENST00000281513|NBAS ENSG00000151779|ENST00000281513|NBAS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3189697265625 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 121.75 1 117.2 116.7 117.7 -4.5476 0 0 0 0.19632 1 23996 23996 0.073264 0.029476 1 42827 4887 28479 28496 42208 42208 0.06935175545504535 SLYTKVVHYRK 11 Unmodified _SLYTKVVHYRK_ 0 0 0 nc|ENSG00000142515|P07288-3|KLK3;ENSG00000142515|ENST00000326003|KLK3 nc|ENSG00000142515|P07288-3|KLK3 nc|ENSG00000142515|P07288-3|KLK3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2468566894531 3 465.269866 1392.78777 NaN NaN NaN NaN NaN NaN NaN 122.64 1 118.11 117.61 118.61 -4.5305 0 0 0 0.22632 1 23610 23610 0.026206 0 1 42828 4422 28480 28497 42209 42209 0.10708701168255175 SLYVSNIGTL 10 Unmodified _SLYVSNIGTL_ 0 0 0 REV__tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1 REV__tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2853393554688 2 533.792589 1065.57063 0.083695 4.4676E-05 0.0054962 2.9338E-06 0.089191 4.761E-05 534.2938750760533 82.38 0.49572 78.772 78.531 79.027 -3.6079 18 13 2 0 0 0 0.85881 1 16113 16113 18.373 0 1 630070 + 42829 25330 28481 28498 42210 42210 0.040463058948716935 SLYVSNIGTL 10 Unmodified _SLYVSNIGTL_ 0 0 0 REV__tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1 REV__tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.792589 1065.57063 0.53328 0.00028466 -0.22673 -0.00012103 0.30655 0.00016364 533.7929256395431 78.951 0.28214 78.951 78.749 79.031 0 0.087799 -0.0002731 NaN 18.373 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 948760 + 42830 25330 28481 28498 0.040463058948716935 SMAEVDAAMAA 11 Unmodified _SMAEVDAAMAA_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2859497070312 2 533.730817 1065.44708 -0.010628 -5.6723E-06 -0.34003 -0.00018149 -0.35066 -0.00018716 533.7309365043213 89.106 0.56575 89.106 88.86 89.425 0 25 15 2 0 0 0 0.08675 1 17420 17420 62.573 39.836 1 2737300 42831 3233 28482 28499 42211 42211 -0.08302436539429436 SMAEVDAAMAA 11 Unmodified _SMAEVDAAMAA_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2686767578125 2 533.730817 1065.44708 0.080149 4.2778E-05 -0.014543 -7.7622E-06 0.065606 3.5016E-05 533.7308816080929 93.215 0.75803 89.224 88.795 89.553 -3.9907 57 21 4 0 0 0 0.048039 1 18248 18248 88.954 59.872 1 5061100 42832 3233 28482 28499 42212 42212 -0.08302436539429436 SMAEVDAAMAA 11 Unmodified _SMAEVDAAMAA_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2869262695312 2 533.730817 1065.44708 0.58551 0.0003125 -0.041885 -2.2355E-05 0.54362 0.00029015 533.7305858554469 93.322 0.77774 89.179 88.874 89.651 -4.1435 50 22 3 0 0 0 0.048039 1 17802 17802 88.954 54.552 1 5100900 42833 3233 28482 28499 42213 42213 -0.08302436539429436 SMAEVDAAMAA 11 Unmodified _SMAEVDAAMAA_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2841796875 2 533.730817 1065.44708 0.12759 6.8099E-05 0.56263 0.00030029 0.69022 0.00036839 533.7308831644673 93.072 0.69144 89.228 88.983 89.674 -3.844 45 19 4 0 0 0 0.08675 1 17820 17820 62.573 42.119 1 3594100 42834 3233 28482 28499 42214 42214 -0.08302436539429436 SMAEVDAAMAA 11 Oxidation (M) _SMAEVDAAM(Oxidation (M))AA_ SMAEVDAAM(1)AA SM(-68)AEVDAAM(68)AA 0 0 1 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2621459960938 2 541.728274 1081.442 0.28409 0.0001539 -0.39081 -0.00021171 -0.10672 -5.7811E-05 541.7279864040643 54.016 0.53777 54.016 53.744 54.282 0 23 14 2 0 0 0 0.089118 1 10283 10283 69.105 40.023 2 2204900 42835 3233 28482 28500 42215 42215 47 -0.09546740402061005 SMAEVDAAMAA 11 Oxidation (M) _SMAEVDAAM(Oxidation (M))AA_ SMAEVDAAM(1)AA SM(-69)AEVDAAM(69)AA 0 0 1 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2630615234375 2 541.728274 1081.442 0.083609 4.5293E-05 -0.036915 -1.9998E-05 0.046694 2.5295E-05 541.7280850996559 56.987 0.62664 54.092 53.786 54.413 -2.8944 26 17 2 0 0 0 0.08675 1 10938 10938 71.922 44.293 2 2944700 42836 3233 28482 28500 42216 42216 47 -0.09546740402061005 SMAEVDAAMAA 11 Oxidation (M) _SMAEVDAAM(Oxidation (M))AA_ SMAEVDAAM(1)AA SM(-75)AEVDAAM(75)AA 0 0 1 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2623901367188 2 541.728274 1081.442 0.11613 6.2913E-05 -0.1449 -7.8498E-05 -0.028769 -1.5585E-05 541.7281623206418 57.315 0.52523 54.063 53.833 54.358 -3.2517 31 14 4 0 0 0 0.074541 1 10662 10662 78.728 38.778 2 1927700 42837 3233 28482 28500 42217 42217 47 -0.09546740402061005 SMAEVDAAMAA 11 Oxidation (M) _SMAEVDAAM(Oxidation (M))AA_ SMAEVDAAM(1)AA SM(-68)AEVDAAM(68)AA 0 0 1 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.263916015625 2 541.728274 1081.442 0.1388 7.5191E-05 -0.44625 -0.00024175 -0.30745 -0.00016656 541.7281447121185 57.465 0.64272 54.289 53.932 54.575 -3.1761 34 17 3 0 0 0 0.074541 1 10711 10711 69.105 34.703 2 1929500 42838 3233 28482 28500 42218 42218 47 -0.09546740402061005 SMAFPDNQRPF 11 Unmodified _SMAFPDNQRPF_ 0 0 0 ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5 ENSG00000244405|ENST00000306376|ETV5 ENSG00000244405|ENST00000306376|ETV5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2253112792969 3 437.204645 1308.59211 NaN NaN NaN NaN NaN NaN NaN 157.97 1 152.7 152.2 153.2 -5.2748 0 0 0 0.22632 1 30660 30660 0.026206 0.024825 1 42839 7879 28483 28501 42219 42219 -0.049846323480778665 SMANPPAAV 9 Oxidation (M) _SM(Oxidation (M))ANPPAAV_ SM(1)ANPPAAV SM(69)ANPPAAV 0 0 1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21893310546875 2 437.210378 872.406203 -0.55304 -0.00024179 0.52193 0.00022819 -0.031102 -1.3598E-05 437.2106168275681 36.19 0.77665 33.796 33.451 34.228 -2.3938 36 21 2 0 0 0 0.11402 1 6711 6711 69.105 23.405 1 1713300 42840 899 28484 28502 42220 42220 5 -0.03510409796740532 SMANPPAAV 9 Oxidation (M) _SM(Oxidation (M))ANPPAAV_ SM(1)ANPPAAV SM(69)ANPPAAV 0 0 1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2192687988281 2 437.210378 872.406203 0.090958 3.9768E-05 0.012523 5.475E-06 0.10348 4.5243E-05 437.2103740351452 36.228 0.83654 33.88 33.406 34.243 -2.3479 41 23 2 0 0 0 0.11402 1 6400 6400 69.105 19.172 1 1775200 42841 899 28484 28502 42221 42221 5 -0.03510409796740532 SMANPPAAV 9 Oxidation (M) _SM(Oxidation (M))ANPPAAV_ SM(1)ANPPAAV SM(69)ANPPAAV 0 0 1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2273254394531 2 437.210378 872.406203 0.10517 4.5983E-05 0.53574 0.00023423 0.64092 0.00028022 437.2108167637014 36.119 1.2687 33.843 33.455 34.724 -2.2766 53 35 2 0 0 0 0.053942 1 6401 6401 69.105 19.172 1 1109300 42842 899 28484 28502 42222 42222 5 -0.03510409796740532 SMCDECCFEEL 11 Unmodified _SMCDECCFEEL_ 0 0 0 REV__ZMYM6|p.F804Lfs*6|1|0.38|ENSG00000163867|chr1:34988670-34988670|A/-|frameshift_variant;REV__ZMYM6|p.I637Yfs*14|1|0.36|ENSG00000163867|chr1:35005177-35005177|T/-|frameshift_variant REV__ZMYM6|p.F804Lfs*6|1|0.38|ENSG00000163867|chr1:34988670-34988670|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2161560058594 3 436.81322 1307.41783 NaN NaN NaN NaN NaN NaN NaN 119.82 1 115.29 114.79 115.79 -4.5221 0 0 0 0.23698 1 23626 23626 0.45452 0.046251 1 + 42843 17623;25566 28485 28503 42223 42223 -0.22358084942220557 SMCVEGSE 8 Unmodified _SMCVEGSE_ 0 0 0 REV__nc|ENSG00000205189|Q96DT7-2|ZBTB10 REV__nc|ENSG00000205189|Q96DT7-2|ZBTB10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 421.3351135253906 2 421.156954 840.299354 NaN NaN NaN NaN NaN NaN NaN 115 1 115 114.5 115.5 0 0 0 0 0.21486 1 22626 22626 1.8442 1.0506 1 + 42844 19581 28486 28504 42224 42224 -0.12718328073412977 SMDKVMLRWLY 11 Unmodified _SMDKVMLRWLY_ 0 0 0 REV__ENSG00000120800|ENST00000261637|UTP20 REV__ENSG00000120800|ENST00000261637|UTP20 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2484436035156 3 481.249197 1440.72576 NaN NaN NaN NaN NaN NaN NaN 105.81 1 101.43 100.93 101.93 -4.3764 0 0 0 0.22632 1 20285 20285 0.0059557 0.0053913 1 + 42845 15634 28487 28505 42225 42225 0.023028904332932143 SMDRDDNQ 8 Unmodified _SMDRDDNQ_ 0 0 0 nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2;R3HDM2|p.P672Lfs*34|2|0.2|ENSG00000179912|chr12:57266805-57266805|G/-|frameshift_variant;R3HDM2|p.D913Gfs*7|1|0.51|ENSG00000179912|chr12:57254966-57254967|-/C|frameshift_variant;R3HDM2|p.D913Tfs*41|1|0.42|ENSG00000179912|chr12:57254967-57254967|C/-|frameshift_variant nc|ENSG00000179912|Q9Y2K5|R3HDM2 nc|ENSG00000179912|Q9Y2K5|R3HDM2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27178955078125 2 490.690538 979.366523 NaN NaN NaN NaN NaN NaN NaN 157.34 1 157.34 156.84 157.84 0 0 0 0 0.23782 1 31576 31576 0.0082765 0 1 42846 6648 28488 28506 42226 42226 -0.12398581538116105 SMDSSHVSL 9 Unmodified _SMDSSHVSL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77850341796875 2 481.716024 961.417496 -0.19847 -9.5605E-05 0.068924 3.3202E-05 -0.12954 -6.2403E-05 481.7161094950413 56.849 0.80803 56.849 56.499 57.307 0 34 22 2 0 0 0 0.086188 1 10890 10890 65.235 38.351 1 3314200 42847 3751 28489 28507 42227 42227 -0.0647563249325458 SMDSSHVSL 9 Oxidation (M) _SM(Oxidation (M))DSSHVSL_ SM(1)DSSHVSL SM(59)DSSHVSL 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25860595703125 2 489.713482 977.41241 0.22909 0.00011219 -0.5452 -0.00026699 -0.31611 -0.0001548 489.7133348823312 36.274 0.45487 36.274 36.07 36.525 0 17 12 2 0 0 0 0.14967 1 6688 6688 58.679 34.005 1 2501000 42848 3751 28489 28508 42228 42228 61 -0.0771993635586341 SMDSSHVSL 9 Oxidation (M) _SM(Oxidation (M))DSSHVSL_ SM(1)DSSHVSL SM(42)DSSHVSL 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2736511230469 2 489.713482 977.41241 -0.21127 -0.00010346 -0.10563 -5.1731E-05 -0.31691 -0.00015519 489.7134125693135 38.423 0.80105 35.874 35.63 36.431 -2.5491 30 22 2 0 0 0 0.27865 1 7136 7136 41.84 21.386 1 2665300 42849 3751 28489 28508 42229 42229 61 -0.0771993635586341 SMDSSHVSL 9 Oxidation (M) _SM(Oxidation (M))DSSHVSL_ SM(1)DSSHVSL SM(42)DSSHVSL 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2586669921875 2 489.713482 977.41241 0.16459 8.0603E-05 -0.42255 -0.00020693 -0.25796 -0.00012633 489.71332377078096 38.371 0.63238 35.929 35.74 36.373 -2.4419 25 17 2 0 0 0 0.27865 1 6836 6836 41.84 25.992 1 2423000 42850 3751 28489 28508 42230 42230 61 -0.0771993635586341 SMDTRSILY 9 Unmodified _SMDTRSILY_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.769775390625 2 543.268424 1084.5223 0.10522 5.7163E-05 -0.3436 -0.00018667 -0.23838 -0.0001295 543.268114357696 93.268 1.0117 93.268 92.783 93.794 0 49 28 2 0 0 0 0.24263 1 18174 18174 34.932 2.1464 1 3204000 42851 12588 28490 28509 42231 42231 -0.016585110166943196 SMDTRSILY 9 Unmodified _SMDTRSILY_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7698364257812 2 543.268424 1084.5223 0.26317 0.00014297 -0.55148 -0.0002996 -0.28831 -0.00015663 543.2678748701496 97.302 0.69933 93.204 92.873 93.572 -4.0978 44 19 3 0 0 0 0.10083 1 19078 19078 55.503 29.161 1 3160400 42852 12588 28490 28509 42232 42232 -0.016585110166943196 SMDTRSILY 9 Unmodified _SMDTRSILY_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7815551757812 2 543.268424 1084.5223 0.17613 9.5687E-05 -0.37041 -0.00020123 -0.19428 -0.00010555 543.2679509430748 97.525 1.0294 93.291 92.818 93.847 -4.2348 69 29 3 0 0 0 0.048406 3 18613 18580;18613;18634 71.708 43.221 1 3857200 42853 12588 28490 28509 42233;42234;42235 42234 -0.016585110166943196 SMDTRSILY 9 Unmodified _SMDTRSILY_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7703857421875 2 543.268424 1084.5223 0.082585 4.4866E-05 -0.24745 -0.00013443 -0.16486 -8.9564E-05 543.2680066788417 97.213 0.83319 93.293 92.987 93.821 -3.9194 51 23 3 0 0 0 0.088942 1 18628 18628 59.368 36.22 1 2631300 42854 12588 28490 28509 42236 42236 -0.016585110166943196 SMDTRSILY 9 Unmodified _SMDTRSILY_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.268424 1084.5223 0.10522 5.7163E-05 -0.3436 -0.00018667 -0.23838 -0.0001295 543.268114357696 93.268 1.0117 93.268 92.783 93.794 0 0.0039359 3.4058E-05 NaN 71.708 49 28 2 NaN NaN NaN NaN 0 NaN NaN 0 3204000 42855 12588 28490 28509 -0.016585110166943196 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21575927734375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 62.873 1 62.873 62.373 63.373 0 0 0 0 0.21486 1 12081 12081 9.3474 0 1 42856 2738 28491 28510 42237 42237 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2166748046875 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 77.164 1 77.164 76.664 77.664 0 0 0 0 0.21486 1 14999 14999 10.183 0.83596 1 42857 2738 28491 28510 42238 42238 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2170715332031 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 96.675 1 96.675 96.175 97.175 0 0 0 0 0.21486 1 18941 18941 10.183 0 1 42858 2738 28491 28510 42239 42239 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.216552734375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 121.33 1 121.33 120.83 121.83 0 0 0 0 0.21486 1 23917 23917 10.183 0 1 42859 2738 28491 28510 42240 42240 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.216796875 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 122.43 1 122.43 121.93 122.93 0 0 0 0 0.21486 1 24132 24132 10.183 0 1 42860 2738 28491 28510 42241 42241 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.216552734375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 125.72 1 125.72 125.22 126.22 0 0 0 0 0.21486 1 24799 24799 5.7604 0 1 42861 2738 28491 28510 42242 42242 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2280578613281 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 98.159 1 94.038 93.538 94.538 -4.1209 0 0 0 0.23749 1 19273 19273 0.0082765 0 1 42862 2738 28491 28510 42243 42243 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2164001464844 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 101.69 1 97.374 96.874 97.874 -4.3208 0 0 0 0.21486 1 19462 19462 10.183 0 1 42863 2738 28491 28510 42244 42244 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.228271484375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 113.07 1 108.55 108.05 109.05 -4.5259 0 0 0 0.23749 1 21705 21705 0.0082765 0 1 42864 2738 28491 28510 42245 42245 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2164001464844 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 125.99 1 121.22 120.72 121.72 -4.7681 0 0 0 0.21486 1 24182 24182 10.183 0 1 42865 2738 28491 28510 42246 42246 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2327575683594 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 100.82 1 96.835 96.335 97.335 -3.9895 0 0 0 0.21486 1 19375 19375 10.183 0 1 42866 2738 28491 28510 42247 42247 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.228271484375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 108.21 1 104.07 103.57 104.57 -4.135 0 0 0 0.23749 1 20820 20820 0.0082765 0 1 42867 2738 28491 28510 42248 42248 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2166748046875 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 121.89 1 117.36 116.86 117.86 -4.5305 0 0 0 0.21486 1 23467 23467 10.183 0 1 42868 2738 28491 28510 42249 42249 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2152099609375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 125.49 1 120.84 120.34 121.34 -4.6495 0 0 0 0.21486 1 24146 24146 10.183 0 1 42869 2738 28491 28510 42250 42250 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21630859375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 125.77 1 121.12 120.62 121.62 -4.6495 0 0 0 0.21486 1 24200 24200 10.183 0 1 42870 2738 28491 28510 42251 42251 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2284240722656 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 125.89 1 121.24 120.74 121.74 -4.6495 0 0 0 0.23366 1 24221 24221 0.12286 0 1 42871 2738 28491 28510 42252 42252 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21636962890625 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 129.57 1 124.83 124.33 125.33 -4.7408 0 0 0 0.21486 1 24934 24934 5.7604 0 1 42872 2738 28491 28510 42253 42253 -0.019854982088986617 SMFAHAPL 8 Unmodified _SMFAHAPL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2168884277344 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 130.13 1 125.36 124.86 125.86 -4.7725 0 0 0 0.21486 1 25039 25039 10.183 0 1 42873 2738 28491 28510 42254 42254 -0.019854982088986617 SMFAWMKDY 9 Unmodified _SMFAWMKDY_ 0 0 0 REV__nc|ENSG00000164418|Q13002-6|GRIK2 REV__nc|ENSG00000164418|Q13002-6|GRIK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2554931640625 2 589.754095 1177.49364 0.68685 0.00040508 -4.239 -0.0024999 -3.5521 -0.0020949 589.7517639254095 86.618 0.37951 82.668 82.546 82.926 -3.9503 14 10 2 0 0 0 0.5428 1 16492 16492 7.4771 3.6007 1 1165100 + 42874 17683 28492 28511 42255 42255 -0.08800951917464772 SMGKKLSR 8 Unmodified _SMGKKLSR_ 0 0 0 ENST00000451644.5_1_2:12246998-12271622:+|nuORF ENST00000451644.5_1_2:12246998-12271622:+|nuORF ENST00000451644.5_1_2:12246998-12271622:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7642517089844 2 453.763112 905.511671 NaN NaN NaN NaN NaN NaN NaN 13.819 1 12.704 12.204 13.204 -1.1142 0 0 0 0.2396 1 2029 2029 0.12286 0 1 42875 9979 28493 28512 42256 42256 0.05513551119543081 SMKQVWWLRAY 11 Unmodified _SMKQVWWLRAY_ 0 0 0 REV__ENST00000379644.8_2_8:43055194-43055551:+|nuORF REV__ENST00000379644.8_2_8:43055194-43055551:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2577209472656 3 489.923702 1466.74928 -0.96836 -0.00047442 0.32815 0.00016077 -0.64021 -0.00031365 489.9238247552893 21.361 0.73347 19.64 19.353 20.087 -1.7211 34 20 2 0 0 0 0.66234 1 3355 3355 0.50596 0 1 1343600 + 42876 21142 28494 28513 42257 42257 0.03457072262085603 SMLEDVQRA 9 Oxidation (M) _SM(Oxidation (M))LEDVQRA_ SM(1)LEDVQRA SM(76)LEDVQRA 0 0 1 ENSG00000106344|ENST00000223073|RBM28;RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant;RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant ENSG00000106344|ENST00000223073|RBM28 ENSG00000106344|ENST00000223073|RBM28 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2705078125 2 532.755681 1063.49681 0.097171 5.1768E-05 -0.21491 -0.00011449 -0.11774 -6.2724E-05 532.7555803975475 33.093 0.80381 33.093 32.467 33.271 0 40 22 3 0 0 0 0.031602 1 6024 6024 75.761 37.585 1 6963800 42877 2378 28495 28514 42258 42258 27 -0.032399855391076926 SMLEDVQRA 9 Oxidation (M) _SM(Oxidation (M))LEDVQRA_ SM(1)LEDVQRA SM(86)LEDVQRA 0 0 1 ENSG00000106344|ENST00000223073|RBM28;RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant;RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant ENSG00000106344|ENST00000223073|RBM28 ENSG00000106344|ENST00000223073|RBM28 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2872314453125 2 532.755681 1063.49681 -0.23169 -0.00012343 0.5813 0.00030969 0.3496 0.00018625 532.7558677131876 35.364 0.60653 32.97 32.774 33.381 -2.3938 37 16 3 0 0 0 0.027495 1 6517 6517 85.642 39.942 1 7331800 42878 2378 28495 28514 42259 42259 27 -0.032399855391076926 SMLEDVQRA 9 Oxidation (M) _SM(Oxidation (M))LEDVQRA_ SM(1)LEDVQRA SM(93)LEDVQRA 0 0 1 ENSG00000106344|ENST00000223073|RBM28;RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant;RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant ENSG00000106344|ENST00000223073|RBM28 ENSG00000106344|ENST00000223073|RBM28 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2697143554688 2 532.755681 1063.49681 0.55205 0.00029411 -0.093797 -4.9971E-05 0.45825 0.00024414 532.7554626983058 35.347 0.65523 33.095 32.811 33.466 -2.2527 41 18 3 0 0 0 0.028725 1 6224 6224 93.166 51.326 1 5377300 42879 2378 28495 28514 42260 42260 27 -0.032399855391076926 SMLEDVQRA 9 Oxidation (M) _SM(Oxidation (M))LEDVQRA_ SM(1)LEDVQRA SM(96)LEDVQRA 0 0 1 ENSG00000106344|ENST00000223073|RBM28;RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant;RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant ENSG00000106344|ENST00000223073|RBM28 ENSG00000106344|ENST00000223073|RBM28 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2691650390625 2 532.755681 1063.49681 0.37439 0.00019946 -0.0076889 -4.0963E-06 0.3667 0.00019536 532.7555836996356 35.311 0.59106 33.034 32.795 33.386 -2.2766 41 16 3 0 0 0 0.00807 1 6199 6199 96.367 50.667 1 6411000 42880 2378 28495 28514 42261 42261 27 -0.032399855391076926 SMLEDVQRA 9 Oxidation (M) _SM(Oxidation (M))LEDVQRA_ SM(1)LEDVQRA SM(73)LEDVQRA 0 0 1 ENSG00000106344|ENST00000223073|RBM28;RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant;RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant ENSG00000106344|ENST00000223073|RBM28 ENSG00000106344|ENST00000223073|RBM28 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2698974609375 2 532.755681 1063.49681 0.30867 0.00016445 -0.51628 -0.00027505 -0.20761 -0.00011061 532.755678900287 36.837 0.67243 34.5 34.169 34.842 -2.3375 62 18 4 0 0 0 0.065291 1 6486 6486 72.968 41.7 1 4639000 42881 2378 28495 28514 42262 42262 27 -0.032399855391076926 SMLKKKKG 8 Unmodified _SMLKKKKG_ 0 0 0 REV__NAA16|p.E63Kfs*38|2|0.32|ENSG00000172766|chr13:41318846-41318846|A/-|frameshift_variant REV__NAA16|p.E63Kfs*38|2|0.32|ENSG00000172766|chr13:41318846-41318846|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23309326171875 2 460.291505 918.568457 NaN NaN NaN NaN NaN NaN NaN 175.88 1 175.88 175.38 176.38 0 0 0 0 0.23811 1 36436 36436 0.12286 0 1 + 42882 23910 28496 28515 42263 42263 0.10591598676069225 SMLRNCWVFGV 11 Unmodified _SMLRNCWVFGV_ 0 0 0 ENST00000400274.5_1_21:47989006-47989108:+|nuORF ENST00000400274.5_1_21:47989006-47989108:+|nuORF ENST00000400274.5_1_21:47989006-47989108:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.8901062011719 3 437.882737 1310.62638 NaN NaN NaN NaN NaN NaN NaN 10.581 1 10.581 10.081 11.081 0 0 0 0 0.23698 1 1331 1331 0.094841 0 1 42883 9507 28497 28516 42264 42264 -0.016505074608403447 SMMDPNHFL 9 Unmodified _SMMDPNHFL_ 0 0 0 ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2 ENSG00000024048|ENST00000372901|UBR2 ENSG00000024048|ENST00000372901|UBR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.771728515625 2 546.23607 1090.45759 0.22513 0.00012297 -0.58621 -0.00032021 -0.36108 -0.00019723 546.2360683301935 138.01 0.93643 133.37 132.94 133.88 -4.6413 77 26 4 0 0 0 0.58804 2 27208 27208;27222 13.906 4.6214 1 16921000 42884 1135 28498 28517 42265;42266 42265 -0.08402409094333052 SMMDPNHFL 9 Unmodified _SMMDPNHFL_ 0 0 0 ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2 ENSG00000024048|ENST00000372901|UBR2 ENSG00000024048|ENST00000372901|UBR2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.23607 1090.45759 0.33077 0.00018068 -0.62084 -0.00033912 -0.29006 -0.00015844 546.2359512694086 133.38 0.93358 133.38 132.93 133.87 0 -0.0075224 -0.0002685 NaN 13.906 53 26 3 NaN NaN NaN NaN 0 NaN NaN 0 6825700 42885 1135 28498 28517 -0.08402409094333052 SMMDPNHFL 9 Unmodified _SMMDPNHFL_ 0 0 0 ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2 ENSG00000024048|ENST00000372901|UBR2 ENSG00000024048|ENST00000372901|UBR2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.23607 1090.45759 0.22513 0.00012297 -0.58621 -0.00032021 -0.36108 -0.00019723 546.2360683301935 138.01 0.93643 133.37 132.94 133.88 -4.6413 -0.025493 -0.00023067 NaN 13.906 77 26 4 NaN NaN NaN NaN 0 NaN NaN 0 16921000 42886 1135 28498 28517 -0.08402409094333052 SMMDPNHFL 9 Unmodified _SMMDPNHFL_ 0 0 0 ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2 ENSG00000024048|ENST00000372901|UBR2 ENSG00000024048|ENST00000372901|UBR2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.23607 1090.45759 0.093044 5.0824E-05 -0.17683 -9.6592E-05 -0.083789 -4.5768E-05 546.2362007556285 138.35 1.1218 133.43 132.76 133.88 -4.9215 0.034933 0.00021656 NaN 13.906 81 31 4 NaN NaN NaN NaN 0 NaN NaN 0 16535000 42887 1135 28498 28517 -0.08402409094333052 SMMDPNHFL 9 Unmodified _SMMDPNHFL_ 0 0 0 ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2 ENSG00000024048|ENST00000372901|UBR2 ENSG00000024048|ENST00000372901|UBR2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.23607 1090.45759 0.32431 0.00017715 -0.26964 -0.00014729 0.054668 2.9862E-05 546.2360502871114 138.23 0.88271 133.39 132.99 133.87 -4.84 -0.0019176 0.00011517 NaN 13.906 55 24 3 NaN NaN NaN NaN 0 NaN NaN 0 13200000 42888 1135 28498 28517 -0.08402409094333052 SMMPPPPAL 9 Oxidation (M) _SM(Oxidation (M))MPPPPAL_ SM(0.832)M(0.168)PPPPAL SM(7)M(-7)PPPPAL 0 0 1 nc|ENSG00000148737|Q9NQB0-17|TCF7L2;VTI1A-TCF7L2|9|fusion;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;CHD7-TCF7L2|9|fusion;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;CHD7-TCF7L2|5|fusion;CHD7-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;VTI1A-TCF7L2|5|fusion;VTI1A-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-13|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73272705078125 2 478.732632 955.45071 -0.2494 -0.00011939 0.17685 8.4664E-05 -0.072546 -3.473E-05 478.7326417747176 105.35 1.4033 101.08 100.18 101.59 -4.2638 66 39 2 0 0 0 0.060164 3 20764 20711;20741;20764 67.344 43.365 2 1897600 42889 517 28499 28518 42267;42268;42269 42269 1 -0.028797219749208125 SMMPPPPAL 9 Oxidation (M) _SM(Oxidation (M))MPPPPAL_ SM(0.621)M(0.379)PPPPAL SM(2.1)M(-2.1)PPPPAL 0 0 1 nc|ENSG00000148737|Q9NQB0-17|TCF7L2;VTI1A-TCF7L2|9|fusion;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;CHD7-TCF7L2|9|fusion;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;CHD7-TCF7L2|5|fusion;CHD7-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;VTI1A-TCF7L2|5|fusion;VTI1A-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-13|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7334289550781 2 478.732632 955.45071 NaN NaN NaN NaN NaN NaN NaN 95.351 1 91.301 90.801 91.801 -4.0496 0 0 0 0.079869 1 18689 18689 42.095 28.189 2 42890 517 28499 28518 42270 42270 1 -0.028797219749208125 SMMPPPPAL 9 Oxidation (M) _SM(Oxidation (M))MPPPPAL_ SM(0.621)M(0.379)PPPPAL SM(2.1)M(-2.1)PPPPAL 0 0 1 nc|ENSG00000148737|Q9NQB0-17|TCF7L2;VTI1A-TCF7L2|9|fusion;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;CHD7-TCF7L2|9|fusion;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;CHD7-TCF7L2|5|fusion;CHD7-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;VTI1A-TCF7L2|5|fusion;VTI1A-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-13|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7328186035156 2 478.732632 955.45071 NaN NaN NaN NaN NaN NaN NaN 95.567 1 91.517 91.017 92.017 -4.0496 0 0 0 0.079869 1 18732 18732 42.095 13.608 2 42891 517 28499 28518 42271 42271 1 -0.028797219749208125 SMMPPPPAL 9 Oxidation (M) _SM(Oxidation (M))MPPPPAL_ SM(0.621)M(0.379)PPPPAL SM(2.1)M(-2.1)PPPPAL 0 0 1 nc|ENSG00000148737|Q9NQB0-17|TCF7L2;VTI1A-TCF7L2|9|fusion;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;CHD7-TCF7L2|9|fusion;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;CHD7-TCF7L2|5|fusion;CHD7-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;VTI1A-TCF7L2|5|fusion;VTI1A-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-13|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7425842285156 2 478.732632 955.45071 NaN NaN NaN NaN NaN NaN NaN 96.621 1 92.523 92.023 93.023 -4.0978 0 0 0 0.079869 1 18951 18951 42.095 13.608 2 42892 517 28499 28518 42272 42272 1 -0.028797219749208125 SMMPPPPAL 9 Oxidation (M) _SM(Oxidation (M))MPPPPAL_ SM(0.808)M(0.192)PPPPAL SM(6.3)M(-6.3)PPPPAL 0 0 1 nc|ENSG00000148737|Q9NQB0-17|TCF7L2;VTI1A-TCF7L2|9|fusion;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;CHD7-TCF7L2|9|fusion;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;CHD7-TCF7L2|5|fusion;CHD7-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;VTI1A-TCF7L2|5|fusion;VTI1A-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-13|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.732421875 2 478.732632 955.45071 NaN NaN NaN NaN NaN NaN NaN 105.46 1 101.08 100.58 101.58 -4.3764 0 0 0 0.05839 1 20216 20216 48.346 12.302 2 42893 517 28499 28518 42273 42273 1 -0.028797219749208125 SMMPPPPAL 9 Oxidation (M) _SM(Oxidation (M))MPPPPAL_ SM(0.808)M(0.192)PPPPAL SM(6.3)M(-6.3)PPPPAL 0 0 1 nc|ENSG00000148737|Q9NQB0-17|TCF7L2;VTI1A-TCF7L2|9|fusion;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;CHD7-TCF7L2|9|fusion;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;CHD7-TCF7L2|5|fusion;CHD7-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;VTI1A-TCF7L2|5|fusion;VTI1A-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-13|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73199462890625 2 478.732632 955.45071 NaN NaN NaN NaN NaN NaN NaN 105.9 1 101.52 101.02 102.02 -4.3764 0 0 0 0.05839 1 20305 20305 48.346 19.859 2 42894 517 28499 28518 42274 42274 1 -0.028797219749208125 SMMPPPPAL 9 Oxidation (M) _SM(Oxidation (M))MPPPPAL_ SM(0.821)M(0.179)PPPPAL SM(6.6)M(-6.6)PPPPAL 0 0 1 nc|ENSG00000148737|Q9NQB0-17|TCF7L2;VTI1A-TCF7L2|9|fusion;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;CHD7-TCF7L2|9|fusion;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;CHD7-TCF7L2|5|fusion;CHD7-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;VTI1A-TCF7L2|5|fusion;VTI1A-TCF7L2|2|fusion;nc|ENSG00000148737|Q9NQB0-13|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 nc|ENSG00000148737|Q9NQB0-17|TCF7L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7319641113281 2 478.732632 955.45071 0.74768 0.00035794 -0.47176 -0.00022585 0.27592 0.00013209 478.7321851011205 104.98 1.4772 100.92 100.38 101.86 -4.0543 56 41 2 0 0 0 0.095051 3 20277 20257;20277;20327 57.471 39.336 2 1622900 42895 517 28499 28518 42275;42276;42277 42276 1 -0.028797219749208125 SMPAFPALL 9 Unmodified _SMPAFPALL_ 0 0 0 nc|ENSG00000167566|Q9HCH0-2|NCKAP5L;ENSG00000167566|ENST00000335999|NCKAP5L nc|ENSG00000167566|Q9HCH0-2|NCKAP5L nc|ENSG00000167566|Q9HCH0-2|NCKAP5L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1601867675781 3 316.173735 945.499375 NaN NaN NaN NaN NaN NaN NaN 99.107 1 94.838 94.338 95.338 -4.2692 0 0 0 0.23508 1 18947 18947 2.9952 0.26005 1 42896 5819 28500 28519 42278 42278 0.024445146564858078 SMPISIPKA 9 Unmodified _SMPISIPKA_ 0 0 0 nc|ENSG00000182795|Q9BW04-2|SARG;ENSG00000182795|ENST00000359470|C1orf116 nc|ENSG00000182795|Q9BW04-2|SARG nc|ENSG00000182795|Q9BW04-2|SARG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.17919921875 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 70.071 1 70.071 69.571 70.571 0 0 0 0 0.23508 1 13568 13568 1.0715 0 1 42897 6813 28501 28520 42279 42279 0.04727899685201464 SMPISIPKA 9 Unmodified _SMPISIPKA_ 0 0 0 nc|ENSG00000182795|Q9BW04-2|SARG;ENSG00000182795|ENST00000359470|C1orf116 nc|ENSG00000182795|Q9BW04-2|SARG nc|ENSG00000182795|Q9BW04-2|SARG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1699523925781 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 85.511 1 85.511 85.011 86.011 0 0 0 0 0.23508 1 16688 16688 1.0715 0 1 42898 6813 28501 28520 42280 42280 0.04727899685201464 SMPISIPKA 9 Unmodified _SMPISIPKA_ 0 0 0 nc|ENSG00000182795|Q9BW04-2|SARG;ENSG00000182795|ENST00000359470|C1orf116 nc|ENSG00000182795|Q9BW04-2|SARG nc|ENSG00000182795|Q9BW04-2|SARG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.196044921875 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 91.507 1 91.507 91.007 92.007 0 0 0 0 0.23508 1 17884 17884 1.0715 0 1 42899 6813 28501 28520 42281 42281 0.04727899685201464 SMPISIPKA 9 Unmodified _SMPISIPKA_ 0 0 0 nc|ENSG00000182795|Q9BW04-2|SARG;ENSG00000182795|ENST00000359470|C1orf116 nc|ENSG00000182795|Q9BW04-2|SARG nc|ENSG00000182795|Q9BW04-2|SARG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1859130859375 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 92.301 1 92.301 91.801 92.801 0 0 0 0 0.23508 1 18044 18044 1.0715 0 1 42900 6813 28501 28520 42282 42282 0.04727899685201464 SMPISIPKA 9 Unmodified _SMPISIPKA_ 0 0 0 nc|ENSG00000182795|Q9BW04-2|SARG;ENSG00000182795|ENST00000359470|C1orf116 nc|ENSG00000182795|Q9BW04-2|SARG nc|ENSG00000182795|Q9BW04-2|SARG MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1777038574219 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 88.423 1 84.631 84.131 85.131 -3.7926 0 0 0 0.23508 1 17299 17299 1.0715 0 1 42901 6813 28501 28520 42283 42283 0.04727899685201464 SMRTGLESV 9 Unmodified _SMRTGLESV_ 0 0 0 ENST00000371520.5_1_1:53379680-53387220:-|nuORF ENST00000371520.5_1_1:53379680-53387220:-|nuORF ENST00000371520.5_1_1:53379680-53387220:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2648620605469 2 490.247492 978.48043 0.27667 0.00013564 -1.2009 -0.00058872 -0.9242 -0.00045309 490.2468552939899 63.809 0.52012 60.393 60.149 60.669 -3.4158 25 14 2 0 0 0 0.55539 1 11936 11936 16.149 0 1 1464400 42902 9161 28502 28521 42284 42284 -0.009670667051977944 SMSADVPLV 9 Unmodified _SMSADVPLV_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2443542480469 2 459.733686 917.452819 0.2281 0.00010486 -0.075539 -3.4728E-05 0.15256 7.0137E-05 459.73358325366416 125.51 1.0264 125.51 125.04 126.07 0 74 28 3 0 0 0 0.00025058 5 24738 24734;24738;24780;24798;24829 89.427 57.465 1 30571000 42903 3751 28503 28522 42285;42286;42287;42288;42289 42286 -0.00920969965443419 SMSADVPLV 9 Unmodified _SMSADVPLV_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2353210449219 2 459.733686 917.452819 -0.081761 -3.7588E-05 0.14074 6.4704E-05 0.058981 2.7116E-05 459.7337440535443 130.06 1.1344 125.42 124.87 126 -4.6359 95 31 4 0 0 0 0.00025058 8 25589 25538;25543;25589;25593;25641;25682;25685;25728 97.075 57.465 1 66294000 42904 3751 28503 28522 42290;42291;42292;42293;42294;42295;42296;42297 42292 -0.00920969965443419 SMSADVPLV 9 Unmodified _SMSADVPLV_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2352294921875 2 459.733686 917.452819 -0.018783 -8.6353E-06 0.14878 6.8398E-05 0.12999 5.9763E-05 459.73373712538245 130.32 1.054 125.49 124.97 126.03 -4.8355 92 29 4 0 0 0 8.5224E-05 6 25077 24938;24981;24985;25033;25077;25117 105.38 68.574 1 64621000 42905 3751 28503 28522 42298;42299;42300;42301;42302;42303 42302 -0.00920969965443419 SMSADVPLV 9 Unmodified _SMSADVPLV_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23529052734375 2 459.733686 917.452819 0.16969 7.8012E-05 0.061718 2.8374E-05 0.23141 0.00010639 459.7336629819251 130.26 1.2199 125.49 124.93 126.15 -4.7725 100 34 4 0 0 0 0.00025058 7 25042 24993;24996;25032;25042;25044;25090;25139 97.138 65.409 1 49590000 42906 3751 28503 28522 42304;42305;42306;42307;42308;42309;42310 42307 -0.00920969965443419 SMTIGFLYFGH 11 Unmodified _SMTIGFLYFGH_ 0 0 0 nc|ENSG00000143921|Q9H221-2|ABCG8;ENSG00000143921|ENST00000272286|ABCG8 nc|ENSG00000143921|Q9H221-2|ABCG8 nc|ENSG00000143921|Q9H221-2|ABCG8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.04766845703125 4 318.907496 1271.60088 -0.67059 -0.00021386 -0.17049 -5.437E-05 -0.84108 -0.00026823 319.15817446684133 6.7554 0.99585 5.7108 5.4446 6.4405 -1.0446 44 28 2 0 0 0 0.96216 1 545 545 0.45452 0 1 617760 42907 4530 28504 28523 42311 42311 -0.024056587116092487 SMTVSLPPP 9 Unmodified _SMTVSLPPP_ 0 0 0 REV__ENST00000593095.5_1_19:10227779-10227836:-|nuORF REV__ENST00000593095.5_1_19:10227779-10227836:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1392517089844 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 77.785 1 77.785 77.285 78.285 0 0 0 0 0.23508 1 15131 15131 2.9952 0 1 + 42908 23357 28505 28524 42312 42312 0.00691620414204408 SMTVSLPPP 9 Unmodified _SMTVSLPPP_ 0 0 0 REV__ENST00000593095.5_1_19:10227779-10227836:-|nuORF REV__ENST00000593095.5_1_19:10227779-10227836:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649169921875 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 84.455 1 84.455 83.955 84.955 0 0 0 0 0.1964 1 16473 16473 0.40827 0.34428 1 + 42909 23357 28505 28524 42313 42313 0.00691620414204408 SMTVSLPPP 9 Unmodified _SMTVSLPPP_ 0 0 0 REV__ENST00000593095.5_1_19:10227779-10227836:-|nuORF REV__ENST00000593095.5_1_19:10227779-10227836:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1646728515625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 87.266 1 83.538 83.038 84.038 -3.727 0 0 0 0.1964 1 17061 17061 0.40827 0 1 + 42910 23357 28505 28524 42314 42314 0.00691620414204408 SMTVSLPPP 9 Unmodified _SMTVSLPPP_ 0 0 0 REV__ENST00000593095.5_1_19:10227779-10227836:-|nuORF REV__ENST00000593095.5_1_19:10227779-10227836:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1704406738281 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 136.81 1 131.89 131.39 132.39 -4.9216 0 0 0 0.23508 1 26297 26297 2.9952 0 1 + 42911 23357 28505 28524 42315 42315 0.00691620414204408 SMVLYCQI 8 Unmodified _SMVLYCQI_ 0 0 0 ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8 ENST00000552128.2_1_12:71519116-71532942:-|nuORF ENST00000552128.2_1_12:71519116-71532942:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73138427734375 2 478.732632 955.45071 NaN NaN NaN NaN NaN NaN NaN 147.64 1 142.48 141.98 142.98 -5.1557 0 0 0 0.22934 1 28570 28570 0.25148 0 1 42912 3470 28506 28525 42316 42316 -0.028797219749094438 SMVPGSYI 8 Unmodified _SMVPGSYI_ 0 0 0 ENSG00000166152|ENST00000299191|C16orf78 ENSG00000166152|ENST00000299191|C16orf78 ENSG00000166152|ENST00000299191|C16orf78 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.2083740234375 2 427.209847 852.40514 NaN NaN NaN NaN NaN NaN NaN 54.145 1 51.262 50.762 51.762 -2.8837 0 0 0 0.22847 1 10326 10326 10.074 0 1 42913 5692 28507 28526 42317 42317 -0.02696624165639605 SMWDDINNV 9 Unmodified _SMWDDINNV_ 0 0 0 ENST00000559483.5_1_14:24761442-24768312:-|nuORF;ENST00000561273.5_1_14:24761833-24768312:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1 ENST00000559483.5_1_14:24761442-24768312:-|nuORF ENST00000559483.5_1_14:24761442-24768312:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7723999023438 2 547.234581 1092.45461 0.24263 0.00013277 0.39623 0.00021683 0.63886 0.0003496 547.7359667945325 141.73 0.5632 137.09 136.71 137.27 -4.6493 21 15 2 0 0 0 0.25976 1 27980 27980 26.995 25.781 1 2725300 42914 5125 28508 28527 42318 42318 -0.08791960947519328 SNAKYTDSQL 10 Unmodified _SNAKYTDSQL_ 0 0 0 REV__ENST00000525987.5_1_11:111959732-112064455:+|nuORF REV__ENST00000525987.5_1_11:111959732-112064455:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 563.7703857421875 2 563.772385 1125.53022 NaN NaN NaN NaN NaN NaN NaN 170 1 165.12 164.62 165.62 -4.873 0 0 0 2.8426 1 33618 33618 3.104 0.98037 1 + 42915 19351 28509 28528 42319 42319 -0.027526604955710354 SNCECHCD 8 Unmodified _SNCECHCD_ 0 0 0 REV__ENSG00000257594|ENST00000529983|GALNT4 REV__ENSG00000257594|ENST00000529983|GALNT4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.0872497558594 3 304.087784 909.241522 NaN NaN NaN NaN NaN NaN NaN 177.8 1 173.01 172.51 173.51 -4.7898 0 0 0 0.21486 1 36367 36367 0 0 1 + 42916 19872 28510 28529 42320 42320 -0.21672913270515437 SNDKATKDPS 10 Unmodified _SNDKATKDPS_ 0 0 0 ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF ENSG00000137947|ENST00000370500|GTF2B ENSG00000137947|ENST00000370500|GTF2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2783813476562 2 531.756735 1061.49892 0.079801 4.2435E-05 0.11816 6.2833E-05 0.19796 0.00010527 531.7567540690753 21.049 0.58328 21.049 20.779 21.362 0 40 16 4 0 0 0 0.4942 2 3517 3505;3517 24.991 3.8278 1 7371300 42917 4127 28511 28530 42321;42322 42322 -0.029372335296784513 SNDKATKDPS 10 Unmodified _SNDKATKDPS_ 0 0 0 ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF ENSG00000137947|ENST00000370500|GTF2B ENSG00000137947|ENST00000370500|GTF2B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 531.756735 1061.49892 0.67196 0.00035732 -0.46457 -0.00024704 0.20739 0.00011028 531.7564539501441 22.355 0.55121 20.881 20.66 21.211 -1.4742 -0.042685 -0.00040424 NaN 24.991 45 15 4 NaN NaN NaN NaN 0 NaN NaN 0 5165000 42918 4127 28511 28530 -0.029372335296784513 SNDKATKDPS 10 Unmodified _SNDKATKDPS_ 0 0 0 ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF ENSG00000137947|ENST00000370500|GTF2B ENSG00000137947|ENST00000370500|GTF2B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 531.756735 1061.49892 0.19913 0.00010589 0.087067 4.6299E-05 0.28619 0.00015219 531.7567347081571 22.295 0.4218 20.841 20.661 21.083 -1.4535 -0.082581 0.00018243 NaN 24.991 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3067000 42919 4127 28511 28530 -0.029372335296784513 SNEATPSKK 9 Unmodified _SNEATPSKK_ 0 0 0 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.251220703125 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 86.134 1 82.405 81.905 82.905 -3.7289 0 0 0 0.22193 1 16468 16468 17.113 0.96379 1 42920 6333 28512 28531 42323 42323 0.005799891668516466 SNEPECIGND 10 Unmodified _SNEPECIGND_ 0 0 0 REV__ENST00000392771.1_2_2:160803104-160803332:-|nuORF REV__ENST00000392771.1_2_2:160803104-160803332:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20147705078125 3 359.809961 1076.40805 -0.24806 -8.9254E-05 -0.62929 -0.00022642 -0.87735 -0.00031568 360.1435253318321 121.84 0.82628 121.84 121.51 122.34 0 62 23 3 0 0 0 0.82223 1 24021 24021 8.7518 5.7565 1 12886000 + 42921 21224 28513 28532 42324 42324 -0.12709445569453237 SNETLQFSDY 10 Unmodified _SNETLQFSDY_ 0 0 0 REV__ENST00000585141.5_1_17:62481823-62493086:-|nuORF REV__ENST00000585141.5_1_17:62481823-62493086:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.297607421875 2 602.26185 1202.50915 NaN NaN NaN NaN NaN NaN NaN 128.16 1 123.34 122.84 123.84 -4.817 0 0 0 0.22588 1 24603 24603 5.7319 0.83484 1 + 42922 19865 28514 28533 42325 42325 -0.08400670595074189 SNFADSYYDY 10 Unmodified _SNFADSYYDY_ 0 0 0 ENSG00000104626|ENST00000250263|ERI1;ERI1|p.V210Sfs*3|1|0.16|ENSG00000104626|chr8:9018334-9018335|-/A|frameshift_variant ENSG00000104626|ENST00000250263|ERI1 ENSG00000104626|ENST00000250263|ERI1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7582397460938 2 622.740751 1243.46695 NaN NaN NaN NaN NaN NaN NaN 139.76 1 134.91 134.41 135.41 -4.8492 0 0 0 2.8426 1 26949 26949 0.063865 0 1 42923 2245 28515 28534 42326 42326 -0.14504646003479138 SNFSTQHF 8 Unmodified _SNFSTQHF_ 0 0 0 ENSG00000142606|ENST00000378412|MMEL1;nc|ENSG00000142606|Q495T6-3|MMEL1 ENSG00000142606|ENST00000378412|MMEL1 ENSG00000142606|ENST00000378412|MMEL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1488952636719 3 323.147125 966.419545 NaN NaN NaN NaN NaN NaN NaN 116.29 1 111.81 111.31 112.31 -4.486 0 0 0 0.21486 1 22931 22931 0.45834 0 1 42924 4429 28516 28535 42327 42327 -0.06500835693134377 SNFVIHAAG 9 Unmodified _SNFVIHAAG_ 0 0 0 ENST00000427998.5_1_1:995191-995768:+|nuORF ENST00000427998.5_1_1:995191-995768:+|nuORF ENST00000427998.5_1_1:995191-995768:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23809814453125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 176.12 1 171.33 170.83 171.83 -4.7898 0 0 0 0.23508 1 36009 36009 1.8442 1.0506 1 42925 9747 28517 28536 42328 42328 0.0003634506618936939 SNHRQRHFY 9 Unmodified _SNHRQRHFY_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7643432617188 2 622.80522 1243.59589 NaN NaN NaN NaN NaN NaN NaN 24.084 1 22.23 21.73 22.73 -1.8534 0 0 0 0.23508 1 3902 3902 3.9444 1.2092 1 + 42926 18377 28518 28537 42329 42329 -0.01616781739335238 SNISAAKA 8 Unmodified _SNISAAKA_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21044921875 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 175.36 1 170.57 170.07 171.07 -4.7898 0 0 0 0.2396 1 35855 35855 0.12286 0 1 42927 437 28519 28538 42330 42330 0.018129672835129895 SNKIFEVKN 9 Unmodified _SNKIFEVKN_ 0 0 0 REV__nc|ENSG00000129159|P48547|KCNC1 REV__nc|ENSG00000129159|P48547|KCNC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 92.389 1 88.294 87.794 88.794 -4.0946 0 0 0 0.23508 1 17600 17600 2.7352 0 1 + 42928 15950 28520 28539 42331 42331 0.0461712798901317 SNKQKLFRM 9 Unmodified _SNKQKLFRM_ 0 0 0 nc|ENSG00000185760|Q9NR82-3|KCNQ5;nc|ENSG00000185760|Q9NR82-6|KCNQ5 nc|ENSG00000185760|Q9NR82-3|KCNQ5 nc|ENSG00000185760|Q9NR82-3|KCNQ5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3228149414062 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 55.274 1 52.136 51.636 52.636 -3.1377 0 0 0 0.19687 1 10257 10257 8.1555 7.7473 1 42929 12517 28521 28540 42332 42332 0.058808696194319054 SNKSERAK 8 Unmodified _SNKSERAK_ 0 0 0 REV__RERE|p.E33K|1|0.22|ENSG00000142599|chr1:8656201-8656201|C/T|missense_variant REV__RERE|p.E33K|1|0.22|ENSG00000142599|chr1:8656201-8656201|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2491149902344 2 460.251423 918.488293 NaN NaN NaN NaN NaN NaN NaN 17.942 1 16.631 16.131 17.131 -1.3109 0 0 0 0.21452 1 2900 2900 13.508 1.8676 1 + 42930 24558 28522 28541 42333 42333 0.025788286065676402 SNKVMEEM 8 Unmodified _SNKVMEEM_ 0 0 0 REV__nc|ENSG00000075292|Q14966-3|ZNF638 REV__nc|ENSG00000075292|Q14966-3|ZNF638 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.10748291015625 3 323.145627 966.415053 NaN NaN NaN NaN NaN NaN NaN 117.27 1 112.69 112.19 113.19 -4.5815 0 0 0 0.21486 1 22504 22504 0.45834 0 1 + 42931 14328 28523 28542 42334 42334 -0.06949804222563216 SNLEERAP 8 Unmodified _SNLEERAP_ 0 0 0 ENST00000546006.5_1_16:30773150-30773405:-|nuORF ENST00000546006.5_1_16:30773150-30773405:-|nuORF ENST00000546006.5_1_16:30773150-30773405:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2316589355469 2 458.230156 914.445759 0.29872 0.00013688 -0.079651 -3.6499E-05 0.21907 0.00010038 458.23007197269425 29.628 0.52203 27.735 27.439 27.961 -1.8928 33 14 3 0 0 0 8448 1 5006 5006 1.7423 0.52744 1 6266200 42932 11125 28524 28543 42335 42335 -0.0148856652166387 SNLESSRMY 9 Unmodified _SNLESSRMY_ 0 0 0 SPHKAP|p.P530Qfs*32|1|0.43|ENSG00000153820|chr2:228019265-228019265|G/-|frameshift_variant;SPHKAP|p.S939Pfs*31|1|0.11|ENSG00000153820|chr2:228018039-228018039|A/-|frameshift_variant;SPHKAP|p.D1487*|1|0.39|ENSG00000153820|chr2:227995684-227995685|-/A|frameshift_variant;nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP SPHKAP|p.P530Qfs*32|1|0.43|ENSG00000153820|chr2:228019265-228019265|G/-|frameshift_variant SPHKAP|p.P530Qfs*32|1|0.43|ENSG00000153820|chr2:228019265-228019265|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7882080078125 2 543.747856 1085.48116 NaN NaN NaN NaN NaN NaN NaN 44.71 1 44.71 44.21 45.21 0 0 0 0 0.22621 1 8394 8394 15.847 1.2655 1 42933 4980 28525 28544 42336 42336 -0.05816272056154048 SNLLIALAIV 10 Unmodified _SNLLIALAIV_ 0 0 0 tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1 tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1 tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 514.21923828125 2 513.831517 1025.64848 NaN NaN NaN NaN NaN NaN NaN 8.985 1 7.9206 7.4206 8.4206 -1.0645 0 0 0 2.8426 1 932 932 0 0 1 42934 26024 28526 28545 42337 42337 0.1366836355086889 SNLSQPRKN 9 Unmodified _SNLSQPRKN_ 0 0 0 DDX25|p.R437Afs*11|1|0.24|ENSG00000109832|chr11:125921294-125921294|G/-|frameshift_variant;ENSG00000109832|ENST00000263576|DDX25 DDX25|p.R437Afs*11|1|0.24|ENSG00000109832|chr11:125921294-125921294|G/-|frameshift_variant DDX25|p.R437Afs*11|1|0.24|ENSG00000109832|chr11:125921294-125921294|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2659301757812 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 46.959 1 44.009 43.509 44.509 -2.9499 0 0 0 0.19643 1 8559 8559 0.12781 0 1 42935 799 28527 28546 42338 42338 0.032381890436681715 SNLSSHKKIH 10 Unmodified _SNLSSHKKIH_ 0 0 0 ENSG00000197013|ENST00000358491|ZNF429 ENSG00000197013|ENST00000358491|ZNF429 ENSG00000197013|ENST00000358491|ZNF429 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.337890625 2 575.820004 1149.62546 -0.65763 -0.00037868 1.1315 0.00065155 0.47389 0.00027287 575.8207720995426 14.891 0.24549 13.777 13.641 13.887 -1.1142 14 6 3 0 0 0 0.75565 1 2279 2279 3.9444 0 1 1148400 42936 7321 28528 28547 42339 42339 0.05662737486136393 SNLSSSQSF 9 Unmodified _SNLSSSQSF_ 0 0 0 REV__ENSG00000180884|ENST00000404801|ZNF792 REV__ENSG00000180884|ENST00000404801|ZNF792 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72088623046875 2 478.719621 955.42469 0.41591 0.0001991 1.966 0.00094117 2.3819 0.0011403 478.7203629956438 118.65 0.77334 114.24 113.89 114.66 -4.4088 30 21 2 0 0 0 0.25183 1 22844 22844 34.402 0.29928 1 1530900 + 42937 18702 28529 28548 42340 42340 -0.054805766211757145 SNMVKTSIAK 10 Unmodified _SNMVKTSIAK_ 0 0 0 REV__ENSG00000097046|ENST00000234626|CDC7 REV__ENSG00000097046|ENST00000234626|CDC7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015686035156 3 360.202353 1077.58523 NaN NaN NaN NaN NaN NaN NaN 76.906 1 76.906 76.406 77.406 0 0 0 0 0.22588 1 14945 14945 5.4027 0.35519 1 + 42938 14628 28530 28549 42341 42341 0.04954054771360461 SNNIQTNR 8 Unmodified _SNNIQTNR_ 0 0 0 REV__nc|ENSG00000170298|Q3B8N2-2|LGALS9B REV__nc|ENSG00000170298|Q3B8N2-2|LGALS9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.15972900390625 3 316.161545 945.462806 NaN NaN NaN NaN NaN NaN NaN 14.522 1 13.349 12.849 13.849 -1.173 0 0 0 0.21486 1 1971 1971 0.35063 0 1 + 42939 18153 28531 28550 42342 42342 -0.012106459158758298 SNNLTQFQTV 10 Unmodified _SNNLTQFQTV_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3342895507812 2 576.288202 1150.56185 0.10522 6.0639E-05 -0.17094 -9.851E-05 -0.065717 -3.7872E-05 576.2883043047059 46.959 0.58889 44.017 43.684 44.273 -2.9421 39 16 3 0 0 0 0.12336 1 8543 8543 53.833 0 1 10980000 42940 4896 28532 28551 42343 42343 -0.0074066774163839 SNPQGPPLNY 10 Unmodified _SNPQGPPLNY_ 0 0 0 TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.L888Wfs*31|1|0.45|ENSG00000129566|chr14:20387928-20387928|G/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7952880859375 2 543.764363 1085.51417 NaN NaN NaN NaN NaN NaN NaN 122.09 1 122.09 121.59 122.59 0 0 0 0 0.22588 1 24070 24070 10.074 2.1638 1 42941 3570 28533 28552 42344 42344 -0.025163219418118388 SNQDPHEYG 9 Unmodified _SNQDPHEYG_ 0 0 0 REV__DSE|p.H450Y|1|0.05|ENSG00000111817|chr6:116435816-116435816|C/T|missense_variant REV__DSE|p.H450Y|1|0.05|ENSG00000111817|chr6:116435816-116435816|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6858520507812 2 523.712328 1045.4101 0.18057 9.4565E-05 0.44291 0.00023196 0.62347 0.00032652 523.7127068820903 122.4 0.71576 122.4 121.99 122.71 0 34 20 2 0 0 0 0.50943 1 24080 24080 0.12781 0 1 2915000 + 42942 13753 28534 28553 42345 42345 -0.11078648769330357 SNQFDMFCCC 10 Unmodified _SNQFDMFCCC_ 0 0 0 REV__ENST00000370383.4_1_1:92498086-92508399:+|nuORF REV__ENST00000370383.4_1_1:92498086-92508399:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 599.2406005859375 2 599.19523 1196.37591 NaN NaN NaN NaN NaN NaN NaN 166.31 1 161.33 160.83 161.83 -4.9811 0 0 0 2.8426 1 32586 32586 0 0 1 + 42943 20982 28535 28554 42346 42346 -0.21442595840085232 SNQKQQQQQQQ 11 Unmodified _SNQKQQQQQQQ_ 0 0 0 ENSG00000136451|ENST00000581208|VEZF1;ENST00000423931.1_1_3:192873384-192874521:-|nuORF ENSG00000136451|ENST00000581208|VEZF1 ENSG00000136451|ENST00000581208|VEZF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22540283203125 3 458.223644 1371.6491 NaN NaN NaN NaN NaN NaN NaN 17.785 1 16.474 15.974 16.974 -1.3109 0 0 0 0.22632 1 2865 2865 0.11104 0.10509 1 42944 4012 28536 28555 42347 42347 -0.021854935379906237 SNQNDGVCM 9 Unmodified _SNQNDGVCM_ 0 0 0 ENST00000465870.5_1_2:238536269-238629540:+|nuORF ENST00000465870.5_1_2:238536269-238629540:+|nuORF ENST00000465870.5_1_2:238536269-238629540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.10748291015625 3 323.125115 966.353515 NaN NaN NaN NaN NaN NaN NaN 117.9 1 113.29 112.79 113.79 -4.6106 0 0 0 0.23508 1 22626 22626 1.1933 0.41681 1 42945 10128 28537 28556 42348 42348 -0.13100735921852902 SNQPPPPL 8 Unmodified _SNQPPPPL_ 0 0 0 REV__DDR1|p.P593Qfs*60|1|0.38|ENSG00000204580|chr6:30896770-30896770|C/-|frameshift_variant REV__DDR1|p.P593Qfs*60|1|0.38|ENSG00000204580|chr6:30896770-30896770|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2450256347656 2 425.226885 848.439217 NaN NaN NaN NaN NaN NaN NaN 89.632 1 85.773 85.273 86.273 -3.8595 0 0 0 0.21486 1 17537 17537 12.532 0 1 + 42946 13653 28538 28557 42349 42349 0.0089354031762241 SNQRFLKG 8 Unmodified _SNQRFLKG_ 0 0 0 REV__nc|ENSG00000171649|Q3SY52-2|ZIK1 REV__nc|ENSG00000171649|Q3SY52-2|ZIK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.178955078125 3 317.178648 948.514114 NaN NaN NaN NaN NaN NaN NaN 97.338 1 93.103 92.603 93.603 -4.2348 0 0 0 0.21486 1 18592 18592 3.2813 0 1 + 42947 18238 28539 28558 42350 42350 0.03779722848867095 SNRISFRMLH 10 Unmodified _SNRISFRMLH_ 0 0 0 REV__nc|ENSG00000184979|Q9UMW8-2|USP18 REV__nc|ENSG00000184979|Q9UMW8-2|USP18 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7708129882812 2 630.835131 1259.65571 NaN NaN NaN NaN NaN NaN NaN 66.274 1 62.778 62.278 63.278 -3.4965 0 0 0 2.8426 1 12420 12420 0.063865 0 1 + 42948 18925 28540 28559 42351 42351 0.036267728796701704 SNRNLSNAS 9 Unmodified _SNRNLSNAS_ 0 0 0 REV__TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant REV__TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2506103515625 2 481.736137 961.457721 0.28625 0.0001379 -4.142 -0.0019954 -3.8558 -0.0018575 481.7331259541645 44.429 0.31563 44.429 44.254 44.57 0 10 8 2 0 0 0 0.73268 1 8341 8341 24.021 8.1734 1 643580 + 42949 16863 28541 28560 42352 42352 -0.02454949778473292 SNRPLPLL 8 Unmodified _SNRPLPLL_ 0 0 0 REV__ENST00000534407.5_1_11:124754789-124756747:-|nuORF REV__ENST00000534407.5_1_11:124754789-124756747:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 455.2397155761719 2 455.279452 908.544351 -0.4065 -0.00018507 0.17136 7.8017E-05 -0.23513 -0.00010705 455.2794288729819 105.8 0.66751 101.54 101.17 101.83 -4.2638 20 18 2 0 0 0 8448 1 20774 20774 0.12286 0 1 1136800 + 42950 22802 28542 28561 42353 42353 0.08642081514040001 SNSFEYKF 8 Unmodified _SNSFEYKF_ 0 0 0 REV__nc|ENSG00000186960|Q86U37|LINC01551 REV__nc|ENSG00000186960|Q86U37|LINC01551 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.1703186035156 3 341.15903 1020.45526 NaN NaN NaN NaN NaN NaN NaN 67.68 1 64.353 63.853 64.853 -3.3268 0 0 0 0.21486 1 12766 12766 6.2058 0 1 + 42951 21341 28543 28562 42354 42354 -0.05414798236131446 SNSIKAAA 8 Unmodified _SNSIKAAA_ 0 0 0 HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|30|3|anti-sense HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|30|3|anti-sense HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|30|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.209716796875 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 122.19 1 117.64 117.14 118.14 -4.5476 0 0 0 0.2396 1 24087 24087 0.30703 0 1 42952 11894 28544 28563 42355 42355 0.018129672835129895 SNSINQFKK 9 Unmodified _SNSINQFKK_ 0 0 0 tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2871704101562 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 21.391 1 21.391 20.891 21.891 0 0 0 0 0.18705 1 3578 3578 25.399 3.6527 1 42953 26191 28545 28564 42356 42356 0.03175957329199264 SNSSAAQS 8 Unmodified _SNSSAAQS_ 0 0 0 REV__ENST00000383620.4_1_6:29857122-29858256:+|nuORF REV__ENST00000383620.4_1_6:29857122-29858256:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 376.1840515136719 2 376.164482 750.314411 NaN NaN NaN NaN NaN NaN NaN 20.823 1 19.102 18.602 19.602 -1.7211 0 0 0 0.23107 1 3225 3225 0.12286 0 1 + 42954 21184 28546 28565 42357 42357 -0.07073376889559313 SNTRVRKG 8 Unmodified _SNTRVRKG_ 0 0 0 REV__ENSG00000168916|ENST00000513986|ZNF608 REV__ENSG00000168916|ENST00000513986|ZNF608 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 459.2672119140625 2 459.267407 916.520262 NaN NaN NaN NaN NaN NaN NaN 166.57 1 166.57 166.07 167.07 0 0 0 0 0.23487 1 33950 33950 0.62683 0 1 + 42955 18066 28547 28566 42358 42358 0.058662410803776766 SNVKIVKVKKE 11 Unmodified _SNVKIVKVKKE_ 0 0 0 ENSG00000124172|ENST00000243997|ATP5F1E ENSG00000124172|ENST00000243997|ATP5F1E ENSG00000124172|ENST00000243997|ATP5F1E MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.9217224121094 4 318.706594 1270.79727 -0.57618 -0.00018363 0.53854 0.00017164 -0.037639 -1.1996E-05 318.706693342617 15.59 0.20081 15.59 15.473 15.673 0 12 5 3 0 0 0 0.018061 1 2380 2380 66.683 0 1 1066100 42956 3295 28548 28567 42359 42359 0.17270469453796977 SNVKIVKVKKE 11 Unmodified _SNVKIVKVKKE_ 0 0 0 ENSG00000124172|ENST00000243997|ATP5F1E ENSG00000124172|ENST00000243997|ATP5F1E ENSG00000124172|ENST00000243997|ATP5F1E MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 318.706594 1270.79727 -0.61229 -0.00019514 0.34444 0.00010978 -0.26785 -8.5365E-05 318.957491424416 16.801 0.17563 15.585 15.495 15.67 -1.2159 0.003874 -0.00022162 NaN 66.683 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 265610 42957 3295 28548 28567 0.17270469453796977 SNVKIVKVKKE 11 Unmodified _SNVKIVKVKKE_ 0 0 0 ENSG00000124172|ENST00000243997|ATP5F1E ENSG00000124172|ENST00000243997|ATP5F1E ENSG00000124172|ENST00000243997|ATP5F1E MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 318.706594 1270.79727 -0.47976 -0.0001529 0.87812 0.00027986 0.39835 0.00012696 318.7067159145382 16.841 0.2034 15.569 15.421 15.625 -1.2722 -0.012413 0.00045872 NaN 66.683 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 265660 42958 3295 28548 28567 0.17270469453796977 SNWLKENA 8 Unmodified _SNWLKENA_ 0 0 0 REV__ENST00000588855.5_1_19:45457868-45457934:+|nuORF REV__ENST00000588855.5_1_19:45457868-45457934:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2404479980469 2 481.240524 960.466495 0.010224 4.9203E-06 0.36844 0.00017731 0.37867 0.00018223 481.2405605685041 35.432 0.55369 35.432 35.203 35.757 0 24 15 2 0 0 0 8448 1 6549 6549 6.2058 5.579 1 946150 + 42959 23302 28549 28568 42360 42360 -0.015319761420073519 SNYVFTINE 9 Unmodified _SNYVFTINE_ 0 0 0 REV__nc|ENSG00000090530|Q8IVL5-2|P3H2 REV__nc|ENSG00000090530|Q8IVL5-2|P3H2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7840576171875 2 543.758746 1085.50294 NaN NaN NaN NaN NaN NaN NaN 135.28 1 130.39 129.89 130.89 -4.8951 0 0 0 0.097865 1 25986 25986 2.6312 0 1 + 42960 14549 28550 28569 42361 42361 -0.03639144035946629 SPAEAKEAA 9 Unmodified _SPAEAKEAA_ 0 0 0 REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1 REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2196044921875 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 39.568 1 39.568 39.068 40.068 0 0 0 0 0.19687 1 7348 7348 8.1555 1.5252 1 + 42961 14249 28551 28570 42362 42362 -0.017353712702515622 SPAKHHVRF 9 Unmodified _SPAKHHVRF_ 0 0 0 ENST00000291900.6_1_9:131517914-131533958:-|nuORF ENST00000291900.6_1_9:131517914-131533958:-|nuORF ENST00000291900.6_1_9:131517914-131533958:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 77.124 1 77.124 76.624 77.624 0 0 0 0 0.23508 1 14991 14991 2.7352 0 1 42962 8479 28552 28571 42363 42363 0.047508068684237514 SPAPHFGG 8 Unmodified _SPAPHFGG_ 0 0 0 REV__ENST00000597778.5_1_19:47995938-47996286:-|nuORF REV__ENST00000597778.5_1_19:47995938-47996286:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 385.219970703125 2 385.18502 768.355488 NaN NaN NaN NaN NaN NaN NaN 91.104 1 87.244 86.744 87.744 -3.8595 0 0 0 0.21486 1 17829 17829 5.2307 0 1 + 42963 23391 28553 28572 42364 42364 -0.03795571059424674 SPAPPSARWS 10 Unmodified _SPAPPSARWS_ 0 0 0 REV__nc|ENSG00000119535|Q99062-2|CSF3R REV__nc|ENSG00000119535|Q99062-2|CSF3R MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 352.5276184082031 3 352.513807 1054.51959 NaN NaN NaN NaN NaN NaN NaN 33.745 1 31.428 30.928 31.928 -2.3175 0 0 0 2.8426 1 6179 6179 0.51642 0 1 + 42964 24014 28554 28573 42365 42365 -0.005485983593416677 SPAQPAQPAP 10 Unmodified _SPAQPAQPAP_ 0 0 0 REV__ENSG00000142235|ENST00000600059|LMTK3 REV__ENSG00000142235|ENST00000600059|LMTK3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7823181152344 2 482.248349 962.482145 0.3857 0.000186 -0.18027 -8.6934E-05 0.20543 9.9068E-05 482.2482911157651 29.628 1.2586 27.735 27.123 28.381 -1.8928 66 35 2 0 0 0 0.84281 1 4956 4956 13.906 0 1 1746100 + 42965 16663 28555 28574 42366 42366 -0.0005968962495899177 SPARSFAY 8 Unmodified _SPARSFAY_ 0 0 0 REV__RTP1|p.T216A|1|0.09|ENSG00000175077|chr3:187199924-187199924|A/G|missense_variant REV__RTP1|p.T216A|1|0.09|ENSG00000175077|chr3:187199924-187199924|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 300.15264892578125 3 300.152099 897.434466 NaN NaN NaN NaN NaN NaN NaN 112.12 1 107.7 107.2 108.2 -4.4231 0 0 0 0.21486 1 22097 22097 0.45834 0 1 + 42966 24585 28556 28575 42367 42367 -0.018353438251438092 SPASPMRQ 8 Unmodified _SPASPMRQ_ 0 0 0 REV__ENST00000278840.8_1_11:61595644-61605301:+|nuORF REV__ENST00000278840.8_1_11:61595644-61605301:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21484375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 105.85 1 105.85 105.35 106.35 0 0 0 0 0.21486 1 20804 20804 12.532 2.4576 1 + 42967 20299 28557 28576 42368 42368 -0.023875877025943737 SPASTERPA 9 Unmodified _SPASTERPA_ 0 0 0 ENSG00000197245|ENST00000374268|FAM110D ENSG00000197245|ENST00000374268|FAM110D ENSG00000197245|ENST00000374268|FAM110D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2310791015625 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 73.435 1 69.841 69.341 70.341 -3.594 0 0 0 0.17788 1 13938 13938 1.6919 1.4404 1 42968 7344 28558 28577 42369 42369 -0.0148856652166387 SPCCCLGEAI 10 Unmodified _SPCCCLGEAI_ 0 0 0 ENST00000596892.5_1_19:47996374-48000675:-|nuORF ENST00000596892.5_1_19:47996374-48000675:-|nuORF ENST00000596892.5_1_19:47996374-48000675:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.2069396972656 3 332.471346 994.392209 -0.43104 -0.00014331 0.26684 8.8718E-05 -0.1642 -5.4591E-05 332.47151326229704 119.95 0.27682 119.95 119.87 120.14 0 10 7 2 0 0 0 0.91149 1 23636 23636 1.7423 1.5354 1 1020000 42969 11672 28559 28578 42370 42370 -0.10521146611699805 SPCSWWTGIS 10 Unmodified _SPCSWWTGIS_ 0 0 0 NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;ENST00000324932.11_1_11:3714574-3716803:-|nuORF NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2164306640625 3 375.16742 1122.48043 0.074719 2.8032E-05 0.85175 0.00031955 0.92647 0.00034758 375.1676246916716 113.51 0.55579 108.98 108.72 109.27 -4.5259 24 15 2 0 0 0 0.51803 1 21745 21745 0.013265 0.0098847 1 1128300 42970 12720 28560 28579 42371 42371 -0.07591066705231242 SPCSWWTGIS 10 Unmodified _SPCSWWTGIS_ 0 0 0 NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant;ENST00000324932.11_1_11:3714574-3716803:-|nuORF NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.16742 1122.48043 -0.37646 -0.00014124 0.98543 0.0003697 0.60897 0.00022847 375.1677149142142 113.42 0.60498 108.97 108.58 109.18 -4.4539 -0.0065407 5.0369E-05 NaN 0.013265 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1214300 42971 12720 28560 28579 -0.07591066705231242 SPCTNETLD 9 Unmodified _SPCTNETLD_ 0 0 0 REV__nc|ENSG00000279331|Q9P1G2|RBM12B-AS1 REV__nc|ENSG00000279331|Q9P1G2|RBM12B-AS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25250244140625 2 490.205489 978.396426 NaN NaN NaN NaN NaN NaN NaN 31.995 1 29.765 29.265 30.265 -2.2305 0 0 0 0.20628 1 5820 5820 21.747 1.293 1 + 42972 24312 28561 28580 42372 42372 -0.09363642592768429 SPDAPGLL 8 Unmodified _SPDAPGLL_ 0 0 0 REV__nc|ENSG00000130518|Q9H0B3-5|IQCN;REV__nc|ENSG00000130518|Q9H0B3-3|IQCN REV__nc|ENSG00000130518|Q9H0B3-3|IQCN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 384.87664794921875 2 385.208161 768.401769 NaN NaN NaN NaN NaN NaN NaN 55.087 1 51.952 51.452 52.452 -3.1352 0 0 0 0.22847 1 10173 10173 10.074 0 1 + 42973 16011;23405 28562 28581 42373 42373 0.008304490520004038 SPDMDTTLK 9 Unmodified _SPDMDTTLK_ 0 0 0 REV__nc|ENSG00000205726|Q15811-12|ITSN1 REV__nc|ENSG00000205726|Q15811-12|ITSN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.85137939453125 3 336.495314 1006.46411 -0.39057 -0.00013143 -1.1029 -0.00037111 -1.4934 -0.00050253 336.49492727275793 22.449 0.24282 22.449 22.293 22.536 0 10 6 2 0 0 0 0.88284 1 3795 3795 0 0 1 466680 + 42974 19600 28563 28582 42374 42374 -0.038861926619802034 SPDPCAKR 8 Unmodified _SPDPCAKR_ 0 0 0 REV__ENST00000395882.5_1_9:87426376-87426628:+|nuORF REV__ENST00000395882.5_1_9:87426376-87426628:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2171936035156 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 102.82 1 98.802 98.302 99.302 -4.0212 0 0 0 0.21486 1 19767 19767 9.3474 0 1 + 42975 21271 28564 28583 42375 42375 -0.023875877026057424 SPDVLKTN 8 Unmodified _SPDVLKTN_ 0 0 0 ENST00000606851.5_1_6:22020665-22056887:+|nuORF ENST00000606851.5_1_6:22020665-22056887:+|nuORF ENST00000606851.5_1_6:22020665-22056887:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2154541015625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 103.23 1 99.045 98.545 99.545 -4.1861 0 0 0 0.20896 1 20293 20293 18.135 3.2967 1 42976 11749 28565 28584 42376 42376 0.01901505626483413 SPDVLKTN 8 Unmodified _SPDVLKTN_ 0 0 0 ENST00000606851.5_1_6:22020665-22056887:+|nuORF ENST00000606851.5_1_6:22020665-22056887:+|nuORF ENST00000606851.5_1_6:22020665-22056887:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23577880859375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 103.48 1 99.13 98.63 99.63 -4.346 0 0 0 0.21486 1 19819 19819 11.64 0.81637 1 42977 11749 28565 28584 42377 42377 0.01901505626483413 SPEARLAECA 10 Unmodified _SPEARLAECA_ 0 0 0 REV__LONRF1|p.I553Nfs*3|2|0.18|ENSG00000154359|chr8:12731766-12731767|-/T|frameshift_variant REV__LONRF1|p.I553Nfs*3|2|0.18|ENSG00000154359|chr8:12731766-12731767|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.695556640625 2 523.750398 1045.48624 NaN NaN NaN NaN NaN NaN NaN 117.76 1 113.15 112.65 113.65 -4.6106 0 0 0 2.8426 1 22601 22601 0.26539 0 1 + 42978 23804 28566 28585 42378 42378 -0.034679681935585904 SPEDLTDP 8 Unmodified _SPEDLTDP_ 0 0 0 nc|ENSG00000176945|Q8N307-3|MUC20;ENSG00000176945|ENST00000447234|MUC20 nc|ENSG00000176945|Q8N307-3|MUC20 nc|ENSG00000176945|Q8N307-3|MUC20 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2301025390625 2 437.195448 872.376342 NaN NaN NaN NaN NaN NaN NaN 25.447 1 23.799 23.299 24.299 -1.6482 0 0 0 0.21486 1 4463 4463 8.5933 0 1 42979 6489 28567 28586 42379 42379 -0.06495070261087221 SPEEAHRAGLI 11 Unmodified _SPEEAHRAGLI_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2623291015625 2 590.309469 1178.60439 NaN NaN NaN NaN NaN NaN NaN 119.97 1 119.97 119.47 120.47 0 0 0 0 0.22943 1 23643 23643 8.7454 0.58988 1 42980 3052 28568 28587 42380 42380 0.022227273866064934 SPEEEAHLREL 11 Unmodified _SPEEEAHLREL_ 0 0 0 ENSG00000111602|ENST00000553532|TIMELESS;nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENST00000557589.1_1_12:56815505-56817595:-|nuORF ENSG00000111602|ENST00000553532|TIMELESS ENSG00000111602|ENST00000553532|TIMELESS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21575927734375 3 437.217608 1308.63099 NaN NaN NaN NaN NaN NaN NaN 104.63 1 100.28 99.782 100.78 -4.346 0 0 0 0.23001 1 20045 20045 8.2864 1.2493 1 42981 2629 28569 28588 42381 42381 -0.010976285127071606 SPEFEQTFY 9 Unmodified _SPEFEQTFY_ 0 0 0 PCDHB11|p.A245T|1|0.34|ENSG00000197479|chr5:141200507-141200507|G/A|missense_variant PCDHB11|p.A245T|1|0.34|ENSG00000197479|chr5:141200507-141200507|G/A|missense_variant PCDHB11|p.A245T|1|0.34|ENSG00000197479|chr5:141200507-141200507|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 383.72613525390625 3 383.169595 1146.48696 -0.17576 -6.7345E-05 1.2552 0.00048097 1.0795 0.00041362 383.170028826987 61.726 1.022 58.764 58.514 59.536 -2.9614 34 28 2 0 0 0 0.61771 1 11896 11896 0.073264 0 1 1412600 42982 12757 28570 28589 42382 42382 -0.08042850272863689 SPEFEQTFY 9 Unmodified _SPEFEQTFY_ 0 0 0 PCDHB11|p.A245T|1|0.34|ENSG00000197479|chr5:141200507-141200507|G/A|missense_variant PCDHB11|p.A245T|1|0.34|ENSG00000197479|chr5:141200507-141200507|G/A|missense_variant PCDHB11|p.A245T|1|0.34|ENSG00000197479|chr5:141200507-141200507|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 383.169595 1146.48696 -0.4213 -0.00016143 2.1899 0.00083912 1.7686 0.00067769 383.1703853013646 58.729 0.56114 58.729 58.513 59.074 0 -0.017747 0.0004646 NaN 0.073264 18 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1080400 42983 12757 28570 28589 -0.08042850272863689 SPEHAMRL 8 Unmodified _SPEHAMRL_ 0 0 0 TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant;TENM3|p.Y2250Mfs*4|1|0.24|ENSG00000218336|chr4:182793414-182793414|T/-|frameshift_variant;ENSG00000218336|ENST00000511685|TENM3;ENST00000513201.1_1_4:183245173-183270995:+|nuORF TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.15936279296875 3 314.160488 939.459635 NaN NaN NaN NaN NaN NaN NaN 81.696 1 78.139 77.639 78.639 -3.557 0 0 0 0.21486 1 15959 15959 10.824 0 1 42984 7756 28571 28590 42383 42383 -0.012516122942315633 SPEHAMRL 8 Unmodified _SPEHAMRL_ 0 0 0 TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant;TENM3|p.Y2250Mfs*4|1|0.24|ENSG00000218336|chr4:182793414-182793414|T/-|frameshift_variant;ENSG00000218336|ENST00000511685|TENM3;ENST00000513201.1_1_4:183245173-183270995:+|nuORF TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.17498779296875 3 314.160488 939.459635 NaN NaN NaN NaN NaN NaN NaN 81.831 1 78.274 77.774 78.774 -3.557 0 0 0 0.21486 1 15988 15988 10.824 0 1 42985 7756 28571 28590 42384 42384 -0.012516122942315633 SPEHPPTTIY 10 Unmodified _SPEHPPTTIY_ 0 0 0 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2100524902344 3 381.188989 1140.54514 NaN NaN NaN NaN NaN NaN NaN 121.15 1 116.6 116.1 117.1 -4.5476 0 0 0 2.8426 1 23882 23882 0.043787 0 1 42986 7893 28572 28591 42385 42385 -0.019511686275791362 SPEKPRLC 8 Unmodified _SPEKPRLC_ 0 0 0 REV__ENSG00000178343|ENST00000319234|SHISA3 REV__ENSG00000178343|ENST00000319234|SHISA3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2489318847656 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 75.245 1 71.523 71.023 72.023 -3.7227 0 0 0 0.21486 1 14230 14230 5.2307 0 1 + 42987 18602 28573 28592 42386 42386 0.012935583655917071 SPEPAKAIK 9 Unmodified _SPEPAKAIK_ 0 0 0 nc|ENSG00000291092|Q13401|PMS2P3;nc|ENSG00000291092|Q13401-2|PMS2P3;ENST00000437568.6_1_7:75140404-75155248:-|nuORF;ENST00000418756.5_1_7:75141716-75156997:-|nuORF nc|ENSG00000291092|Q13401|PMS2P3 nc|ENSG00000291092|Q13401|PMS2P3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.18621826171875 3 314.18692 939.538931 NaN NaN NaN NaN NaN NaN NaN 63.559 1 60.561 60.061 61.061 -2.9975 0 0 0 0.23508 1 12285 12285 2.7352 0 1 42988 9644 28574 28593 42387 42387 0.06674357931558461 SPESRYWRVE 10 Unmodified _SPESRYWRVE_ 0 0 0 REV__nc|ENSG00000204290|Q9UIR0-3|BTNL2 REV__nc|ENSG00000204290|Q9UIR0-3|BTNL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.214599609375 3 436.882559 1307.62585 -0.15343 -6.703E-05 -3.9376 -0.0017203 -4.0911 -0.0017873 436.87935174678046 83.721 0.20364 80.113 80.049 80.252 -3.6079 8 5 2 0 0 0 0.75099 1 16374 16374 5.4027 0.99656 1 496280 + 42989 19521 28575 28594 42388 42388 -0.015658875847066156 SPESRYWRVE 10 Unmodified _SPESRYWRVE_ 0 0 0 REV__nc|ENSG00000204290|Q9UIR0-3|BTNL2 REV__nc|ENSG00000204290|Q9UIR0-3|BTNL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.214599609375 3 436.882559 1307.62585 -0.15343 -6.703E-05 -3.9376 -0.0017203 -4.0911 -0.0017873 436.87935174678046 83.721 0.20364 80.113 80.049 80.252 -3.6079 8 5 2 0 0 0 0.91149 1 16374 16374 5.4027 0.99656 1 496280 + 42990 19521 28575 28594 42389 42389 -0.015658875847066156 SPEVDMDY 8 Unmodified _SPEVDMDY_ 0 0 0 REV__nc|ENSG00000137802|O60336-4|MAPKBP1 REV__nc|ENSG00000137802|O60336-4|MAPKBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7342834472656 2 478.189308 954.364063 0.35109 0.00016789 0.45308 0.00021666 0.80417 0.00038455 478.18941321044804 125 0.62528 120.23 119.85 120.47 -4.7681 17 17 2 0 0 0 0.87562 1 24017 24017 0.68139 0.42991 1 1008100 + 42991 16409 28576 28595 42390 42390 -0.11494429995786959 SPFFRNLLQRR 11 Unmodified _SPFFRNLLQRR_ 0 0 0 BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant;ENSG00000011114|ENST00000334746|BTBD7;BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant;BTBD7|p.P760Lfs*61|1|0.45|ENSG00000011114|chr14:93246129-93246129|G/-|frameshift_variant;ENST00000554644.1_1_14:93723510-93760888:-|nuORF;BTBD7|p.N566Mfs*22|1|0.26|ENSG00000011114|chr14:93253702-93253702|T/-|frameshift_variant;nc|ENSG00000011114|Q9P203-3|BTBD7;BTBD7|p.Y440Mfs*28|1|0.11|ENSG00000011114|chr14:93263838-93263838|A/-|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73065185546875 3 478.608993 1432.80515 NaN NaN NaN NaN NaN NaN NaN 159.7 1 154.91 154.41 155.41 -4.7952 0 0 0 0.22632 1 31753 31753 0.026206 0 1 42992 343 28577 28596 42391 42391 0.1060604149390656 SPFTKPLSFR 10 Unmodified _SPFTKPLSFR_ 0 0 0 ENST00000503063.5_1_17:48625445-48628667:+|nuORF;ENST00000504265.5_1_17:48627490-48628667:+|nuORF ENST00000503063.5_1_17:48625445-48628667:+|nuORF ENST00000503063.5_1_17:48625445-48628667:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2625122070312 2 590.329673 1178.64479 NaN NaN NaN NaN NaN NaN NaN 119.74 1 119.74 119.24 120.24 0 0 0 0 0.22535 1 23596 23596 20.454 0 1 42993 10641 28578 28597 42392 42392 0.0626169377703718 SPGGELFY 8 Unmodified _SPGGELFY_ 0 0 0 REV__ENST00000442528.2_1_11:45826023-45827525:+|nuORF REV__ENST00000442528.2_1_11:45826023-45827525:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21636962890625 2 435.205618 868.396684 0.46727 0.00020336 -0.34648 -0.00015079 0.12079 5.2569E-05 435.2053268011341 103.82 0.84827 99.765 99.347 100.2 -4.0543 70 23 5 0 0 0 0.70613 1 19942 19942 13.508 0.97634 1 14054000 + 42994 21720 28579 28598 42393 42393 -0.04277854810629833 SPGGELFY 8 Unmodified _SPGGELFY_ 0 0 0 REV__ENST00000442528.2_1_11:45826023-45827525:+|nuORF REV__ENST00000442528.2_1_11:45826023-45827525:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 435.205618 868.396684 0.39545 0.0001721 -0.48206 -0.00020979 -0.086612 -3.7694E-05 435.20532195334795 99.332 0.97325 99.332 98.889 99.862 0 -0.29982 -0.00024716 NaN 13.508 49 27 2 NaN NaN NaN NaN 0 NaN NaN 0 14768000 + 42995 21720 28579 28598 -0.04277854810629833 SPGGELFY 8 Unmodified _SPGGELFY_ 0 0 0 REV__ENST00000442528.2_1_11:45826023-45827525:+|nuORF REV__ENST00000442528.2_1_11:45826023-45827525:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 435.205618 868.396684 -0.28889 -0.00012573 0.30647 0.00013338 0.017577 7.6498E-06 435.2056482909852 103.94 0.85259 99.719 99.343 100.2 -4.2183 0.086653 0.00043918 NaN 13.508 61 24 3 NaN NaN NaN NaN 0 NaN NaN 0 7953200 + 42996 21720 28579 28598 -0.04277854810629833 SPGGELFY 8 Unmodified _SPGGELFY_ 0 0 0 REV__ENST00000442528.2_1_11:45826023-45827525:+|nuORF REV__ENST00000442528.2_1_11:45826023-45827525:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 435.205618 868.396684 0.15158 6.5968E-05 -0.23101 -0.00010054 -0.079428 -3.4567E-05 435.20543380260784 104.06 0.93319 99.713 99.315 100.25 -4.346 0.080559 -2.8642E-05 NaN 13.508 64 26 3 NaN NaN NaN NaN 0 NaN NaN 0 11346000 + 42997 21720 28579 28598 -0.04277854810629833 SPGGELFY 8 Unmodified _SPGGELFY_ 0 0 0 REV__ENST00000442528.2_1_11:45826023-45827525:+|nuORF REV__ENST00000442528.2_1_11:45826023-45827525:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 435.205618 868.396684 0.46727 0.00020336 -0.34648 -0.00015079 0.12079 5.2569E-05 435.2053268011341 103.82 0.84827 99.765 99.347 100.2 -4.0543 0.13261 -0.00012915 NaN 13.508 70 23 5 NaN NaN NaN NaN 0 NaN NaN 0 14054000 + 42998 21720 28579 28598 -0.04277854810629833 SPGGGALE 8 Unmodified _SPGGGALE_ 0 0 0 ENST00000591688.5_1_19:13875372-13879601:+|nuORF ENST00000591688.5_1_19:13875372-13879601:+|nuORF ENST00000591688.5_1_19:13875372-13879601:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.86492919921875 2 344.169036 686.323519 NaN NaN NaN NaN NaN NaN NaN 96.584 1 92.349 91.849 92.849 -4.2348 0 0 0 0.23749 1 18442 18442 0.13829 0 1 42999 11629 28580 28599 42394 42394 -0.03218983533224673 SPGGVGPG 8 Unmodified _SPGGVGPG_ 0 0 0 REV__ENSG00000138080|ENST00000380320|EMILIN1 REV__ENSG00000138080|ENST00000380320|EMILIN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.3132629394531 2 314.158471 626.30239 NaN NaN NaN NaN NaN NaN NaN 22.233 1 20.759 20.259 21.259 -1.4742 0 0 0 0.21486 1 3791 3791 2.5775 0 1 + 43000 16435 28581 28600 42395 42395 -0.025709488420829985 SPGPCGLP 8 Unmodified _SPGPCGLP_ 0 0 0 ENST00000253063.3_1_1:28586049-28586106:+|nuORF ENST00000253063.3_1_1:28586049-28586106:+|nuORF ENST00000253063.3_1_1:28586049-28586106:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 364.17413330078125 2 364.175807 726.337061 NaN NaN NaN NaN NaN NaN NaN 91.961 1 91.961 91.461 92.461 0 0 0 0 0.23899 1 17980 17980 1.3295 0 1 43001 8232 28582 28601 42396 42396 -0.037054490256537065 SPGPGGTT 8 Unmodified _SPGPGGTT_ 0 0 0 MMP20|p.R32Gfs*37|1|0.59|ENSG00000137674|chr11:102625227-102625227|G/-|frameshift_variant MMP20|p.R32Gfs*37|1|0.59|ENSG00000137674|chr11:102625227-102625227|G/-|frameshift_variant MMP20|p.R32Gfs*37|1|0.59|ENSG00000137674|chr11:102625227-102625227|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.1622619628906 2 337.161211 672.307869 NaN NaN NaN NaN NaN NaN NaN 143.62 1 138.59 138.09 139.09 -5.0261 0 0 0 0.21486 1 27687 27687 0.69038 0 1 43002 12150 28583 28602 42397 42397 -0.0413927005027972 SPGYGRLDV 9 Unmodified _SPGYGRLDV_ 0 0 0 REV__ENSG00000105131|ENST00000221730|EPHX3 REV__ENSG00000105131|ENST00000221730|EPHX3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7818298339844 2 482.248349 962.482145 0.61657 0.00029734 -0.4896 -0.00023611 0.12698 6.1235E-05 482.2481217032964 29.709 1.3337 27.593 27.066 28.399 -2.1167 63 37 2 0 0 0 0.74655 1 5284 5284 15.847 0 1 1559800 + 43003 14962 28584 28603 42398 42398 -0.0005968962494762309 SPHPAVSAIT 10 Unmodified _SPHPAVSAIT_ 0 0 0 ENST00000555208.1_1_14:77795315-77795561:+|nuORF ENST00000555208.1_1_14:77795315-77795561:+|nuORF ENST00000555208.1_1_14:77795315-77795561:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2640686035156 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 82.297 1 78.74 78.24 79.24 -3.557 0 0 0 2.8426 1 16084 16084 0.51642 0.10815 1 43004 11229 28585 28604 42399 42399 0.023328834091330464 SPHPAVSAIT 10 Unmodified _SPHPAVSAIT_ 0 0 0 ENST00000555208.1_1_14:77795315-77795561:+|nuORF ENST00000555208.1_1_14:77795315-77795561:+|nuORF ENST00000555208.1_1_14:77795315-77795561:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26556396484375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 169.11 1 164.24 163.74 164.74 -4.873 0 0 0 0.22588 1 33386 33386 9.3831 0.78985 1 43005 11229 28585 28604 42400 42400 0.023328834091330464 SPHSPTLLL 9 Unmodified _SPHSPTLLL_ 0 0 0 ENST00000521970.1_1_5:133473560-133474730:+|nuORF ENST00000521970.1_1_5:133473560-133474730:+|nuORF ENST00000521970.1_1_5:133473560-133474730:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.1871337890625 3 322.18692 963.538931 NaN NaN NaN NaN NaN NaN NaN 131.07 1 126.43 125.93 126.93 -4.6359 0 0 0 0.23508 1 25830 25830 1.0715 0 1 43006 10857 28586 28605 42401 42401 0.05570357931583203 SPHVSLKH 8 Unmodified _SPHVSLKH_ 0 0 0 REV__ENST00000380237.5_1_11:5291247-5291382:-|nuORF REV__ENST00000380237.5_1_11:5291247-5291382:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.0624694824219 3 302.171493 903.49265 NaN NaN NaN NaN NaN NaN NaN 55.524 1 55.524 55.024 56.024 0 0 0 0 0.21486 1 10603 10603 3.5965 1.098 1 + 43007 21151 28587 28606 42402 42402 0.0370433782014743 SPHVTPEDY 9 Unmodified _SPHVTPEDY_ 0 0 0 nc|ENSG00000005469|Q9UKG9-3|CROT;ENSG00000005469|ENST00000331536|CROT;ENST00000479014.1_1_7:87005212-87011518:+|nuORF nc|ENSG00000005469|Q9UKG9-3|CROT nc|ENSG00000005469|Q9UKG9-3|CROT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2771606445312 2 522.735271 1043.45599 0.41984 0.00021946 0.49648 0.00025953 0.91632 0.00047899 522.7358691614592 73.001 0.13589 69.463 69.375 69.511 -3.5385 6 3 2 0 0 0 0.58066 1 13840 13840 0.40827 0 1 491460 43008 992 28588 28607 42403 42403 -0.064000035871004 SPIDPKTTA 9 Unmodified _SPIDPKTTA_ 0 0 0 REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2501525878906 2 465.250557 928.486562 0.14592 6.7889E-05 0.16043 7.4641E-05 0.30635 0.00014253 465.2505513393172 73.346 0.95748 73.346 72.886 73.843 0 62 26 4 0 0 0 0.22334 1 14165 14165 36.044 3.7387 1 9363400 + 43009 19033 28589 28608 42404 42404 0.019457747979458873 SPIHYAYE 8 Unmodified _SPIHYAYE_ 0 0 0 REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1 REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2554626464844 2 490.229625 978.444697 -1.4178 -0.00069506 3.8578 0.0018912 2.44 0.0011961 490.2309637960554 18.322 0.23843 16.807 16.712 16.95 -1.5148 10 6 2 0 0 0 0.96284 1 2699 2699 13.508 0 1 249510 + 43010 24228 28590 28609 42405 42405 -0.0453878089057298 SPISATPPC 9 Unmodified _SPISATPPC_ 0 0 0 ENST00000459892.5_1_2:26533861-26534227:-|nuORF ENST00000459892.5_1_2:26533861-26534227:-|nuORF ENST00000459892.5_1_2:26533861-26534227:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2156677246094 2 436.712753 871.410954 0.41121 0.00017958 -0.65085 -0.00028423 -0.23963 -0.00010465 436.71178058244703 112.09 0.59116 107.86 107.67 108.26 -4.2289 29 16 2 0 0 0 0.54354 1 21593 21593 16.942 0 1 605450 43011 10049 28591 28610 42406 42406 -0.029895256539816728 SPIYLNQYRRR 11 Unmodified _SPIYLNQYRRR_ 0 0 0 REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 489.30322265625 3 489.27227 1464.79498 NaN NaN NaN NaN NaN NaN NaN 127.73 1 127.73 127.23 128.23 0 0 0 0 0.22632 1 25217 25217 1.4551 0 1 + 43012 13277 28592 28611 42407 42407 0.0811743376866616 SPKDPGGGG 9 Unmodified _SPKDPGGGG_ 0 0 0 IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant;ENSG00000170604|ENST00000302165|IRF2BP1 IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 386.1875305175781 2 386.185217 770.355882 NaN NaN NaN NaN NaN NaN NaN 27.156 1 25.374 24.874 25.874 -1.7821 0 0 0 0.19343 1 4817 4817 4.7159 1.1289 1 43013 6083 28593 28612 42408 42408 -0.038481961302181844 SPKILKTTL 9 Unmodified _SPKILKTTL_ 0 0 0 REV__ENSG00000187860|ENST00000338306|CCDC157 REV__ENSG00000187860|ENST00000338306|CCDC157 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.2127685546875 3 334.21822 999.632832 -0.53068 -0.00017736 0.18763 6.271E-05 -0.34305 -0.00011465 334.55255473889616 88.879 0.38566 88.879 88.613 88.999 0 16 10 2 0 0 0 0.81492 1 17306 17306 1.0715 0 1 1187900 + 43014 19117 28594 28613 42409 42409 0.13300077033841262 SPKILKTTL 9 Unmodified _SPKILKTTL_ 0 0 0 REV__ENSG00000187860|ENST00000338306|CCDC157 REV__ENSG00000187860|ENST00000338306|CCDC157 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.2016296386719 3 334.21822 999.632832 -0.53068 -0.00017736 0.18763 6.271E-05 -0.34305 -0.00011465 334.55255473889616 88.879 0.38566 88.879 88.613 88.999 0 16 10 2 0 0 0 0.88413 1 17363 17363 1.0715 0 1 1187900 + 43015 19117 28594 28613 42410 42410 0.13300077033841262 SPKILKTTL 9 Unmodified _SPKILKTTL_ 0 0 0 REV__ENSG00000187860|ENST00000338306|CCDC157 REV__ENSG00000187860|ENST00000338306|CCDC157 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 334.21822 999.632832 -0.29706 -9.9283E-05 0.20372 6.8086E-05 -0.093342 -3.1196E-05 334.21824026403846 92.504 0.45599 88.578 88.303 88.759 -3.9251 -0.059687 4.8847E-05 NaN 1.0715 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1264100 + 43016 19117 28594 28613 0.13300077033841262 SPKILKTTL 9 Unmodified _SPKILKTTL_ 0 0 0 REV__ENSG00000187860|ENST00000338306|CCDC157 REV__ENSG00000187860|ENST00000338306|CCDC157 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 334.21822 999.632832 0.26486 8.8522E-05 -0.5392 -0.00018021 -0.27433 -9.1688E-05 334.217956361699 92.62 0.41455 88.476 88.281 88.696 -4.1435 -0.16204 -0.00069604 NaN 1.0715 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 917040 + 43017 19117 28594 28613 0.13300077033841262 SPKILKTTL 9 Unmodified _SPKILKTTL_ 0 0 0 REV__ENSG00000187860|ENST00000338306|CCDC157 REV__ENSG00000187860|ENST00000338306|CCDC157 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 334.21822 999.632832 -0.59099 -0.00019752 0.52599 0.0001758 -0.065001 -2.1725E-05 334.21826901206475 92.427 0.40813 88.619 88.377 88.785 -3.8083 -0.019104 0.00037198 NaN 1.0715 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 972560 + 43018 19117 28594 28613 0.13300077033841262 SPKRGCSS 8 Unmodified _SPKRGCSS_ 0 0 0 ENST00000345306.10_2_5:68665685-68667980:+|nuORF ENST00000345306.10_2_5:68665685-68667980:+|nuORF ENST00000345306.10_2_5:68665685-68667980:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1397705078125 2 411.200344 820.386136 NaN NaN NaN NaN NaN NaN NaN 66.174 1 63.127 62.627 63.627 -3.047 0 0 0 0.21486 1 12818 12818 2.5775 0 1 43019 8904 28595 28614 42411 42411 -0.031241607366837343 SPKVLSLTLPP 11 Unmodified _SPKVLSLTLPP_ 0 0 0 REV__ENSG00000181085|ENST00000338033|MAPK15 REV__ENSG00000181085|ENST00000338033|MAPK15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3265380859375 2 576.355357 1150.69616 0.39832 0.00022957 2.6891 0.0015499 3.0874 0.0017794 576.8580148987706 119.57 0.31163 115.11 115.02 115.34 -4.467 10 8 2 0 0 0 0.79336 1 23023 23023 4.5289 0.58447 1 949160 + 43020 18716 28596 28615 42412 42412 0.12684017751098509 SPLCPSNR 8 Unmodified _SPLCPSNR_ 0 0 0 ENSG00000186185|ENST00000593135|KIF18B ENSG00000186185|ENST00000593135|KIF18B ENSG00000186185|ENST00000593135|KIF18B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2176513671875 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 54.981 1 52.097 51.597 52.597 -2.8837 0 0 0 0.21039 1 10508 10508 16.942 3.0362 1 43021 7041 28597 28616 42413 42413 -0.023875877025943737 SPLFLPCP 8 Unmodified _SPLFLPCP_ 0 0 0 REV__ENST00000593393.1_1_19:58917799-58918078:-|nuORF REV__ENST00000593393.1_1_19:58917799-58918078:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2295837402344 2 437.230582 872.446611 NaN NaN NaN NaN NaN NaN NaN 55.29 1 52.406 51.906 52.906 -2.8837 0 0 0 0.22676 1 10577 10577 0.25148 0 1 + 43022 23358 28598 28617 42414 42414 0.005285565936674175 SPLLALTKG 9 Unmodified _SPLLALTKG_ 0 0 0 REV__ENST00000487667.5_1_6:33380068-33381198:+|nuORF REV__ENST00000487667.5_1_6:33380068-33381198:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.2806701660156 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 52.66 1 49.565 49.065 50.065 -3.0954 0 0 0 0.23508 1 9725 9725 7.2892 0 1 + 43023 22260 28599 28618 42415 42415 0.09543545936935516 SPLLGGGTWPG 11 Unmodified _SPLLGGGTWPG_ 0 0 0 ENST00000560763.5_2_14:103800742-103802031:+|nuORF;ENST00000558316.5_2_14:103800742-103802173:+|nuORF;ENST00000558265.5_2_14:103800742-103802258:+|nuORF ENST00000560763.5_2_14:103800742-103802031:+|nuORF ENST00000560763.5_2_14:103800742-103802031:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2626342773438 2 521.271824 1040.5291 -0.68282 -0.00035593 0.019948 1.0398E-05 -0.66287 -0.00034553 521.2720987008792 131.33 0.61781 126.5 126.24 126.86 -4.8355 23 17 3 0 0 0 0.74417 1 25240 25240 8.7454 0.83525 1 2067400 43024 11264 28600 28619 42416 42416 0.010451699261693648 SPLLLLLLLLA 11 Unmodified _SPLLLLLLLLA_ 0 0 0 ENSG00000109255|ENST00000264218|NMU ENSG00000109255|ENST00000264218|NMU ENSG00000109255|ENST00000264218|NMU MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2557983398438 2 589.909768 1177.80498 NaN NaN NaN NaN NaN NaN NaN 39.962 1 37.472 36.972 37.972 -2.4896 0 0 0 0.22632 1 7140 7140 0 0 1 43025 2523 28601 28620 42417 42417 0.22319228721403306 SPLLQSTLQR 10 Unmodified _SPLLQSTLQR_ 0 0 0 ENST00000316292.13_1_6:74228237-74228423:-|nuORF;EEF1A1|p.P263Lfs*27|1|0.36|ENSG00000156508|chr6:73518595-73518595|G/-|frameshift_variant ENST00000316292.13_1_6:74228237-74228423:-|nuORF ENST00000316292.13_1_6:74228237-74228423:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2394104003906 3 381.555784 1141.64552 -0.2616 -9.9813E-05 -0.84297 -0.00032164 -1.1046 -0.00042146 381.55580114283606 59.545 0.69967 56.611 56.156 56.856 -2.9333 31 19 3 0 0 0 1.1264 1 11394 11394 0.26539 0 1 955580 43026 918 28602 28621 42418 42418 0.08036488426091637 SPLLRRLLL 9 Unmodified _SPLLRRLLL_ 0 0 0 VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant;nc|ENSG00000173511|P49765-2|VEGFB;ENSG00000173511|ENST00000309422|VEGFB VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.280029296875 2 540.866226 1079.7179 0.28126 0.00015212 1.7759 0.00096055 2.0572 0.0011127 541.3679635566552 113.06 0.13677 113.06 113 113.14 0 5 3 2 0 0 0 0.88278 1 22233 22233 0 0 1 2292900 43027 6297 28603 28622 42419 42419 0.18122867290321665 SPLNAEDY 8 Unmodified _SPLNAEDY_ 0 0 0 REV__tr|U7T5B5|U7T5B5_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00510PE=4SV=1 REV__tr|U7T5B5|U7T5B5_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00510PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 454.7044372558594 2 454.70344 907.392327 NaN NaN NaN NaN NaN NaN NaN 54.405 1 51.27 50.77 51.77 -3.1352 0 0 0 0.21323 1 10036 10036 14.582 2.0501 1 + 43028 25409 28604 28623 42420 42420 -0.0650736402418488 SPLNAEDY 8 Unmodified _SPLNAEDY_ 0 0 0 REV__tr|U7T5B5|U7T5B5_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00510PE=4SV=1 REV__tr|U7T5B5|U7T5B5_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00510PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 454.7049865722656 2 454.70344 907.392327 NaN NaN NaN NaN NaN NaN NaN 55.333 1 52.198 51.698 52.698 -3.1352 0 0 0 0.21323 1 10223 10223 14.582 2.0501 1 + 43029 25409 28604 28623 42421 42421 -0.0650736402418488 SPLPSSTGK 9 Unmodified _SPLPSSTGK_ 0 0 0 JPH3|p.L354Cfs*117|1|0.57|ENSG00000154118|chr16:87644931-87644931|C/-|frameshift_variant JPH3|p.L354Cfs*117|1|0.57|ENSG00000154118|chr16:87644931-87644931|C/-|frameshift_variant JPH3|p.L354Cfs*117|1|0.57|ENSG00000154118|chr16:87644931-87644931|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23602294921875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 56.331 1 56.331 55.831 56.831 0 0 0 0 0.16428 1 10756 10756 28.487 0 1 43030 11972 28605 28624 42422 42422 0.019015056264720442 SPLRFALAPD 10 Unmodified _SPLRFALAPD_ 0 0 0 REV__ENST00000315366.7_1_4:114900563-114900782:-|nuORF REV__ENST00000315366.7_1_4:114900563-114900782:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7769775390625 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 50.599 1 47.718 47.218 48.218 -2.8811 0 0 0 0.22588 1 9601 9601 9.3831 1.473 1 + 43031 20518 28606 28625 42423 42423 0.04757431851612637 SPLRNVDSL 9 Unmodified _SPLRNVDSL_ 0 0 0 REV__nc|ENSG00000167525|Q8NCQ7|PROCA1 REV__nc|ENSG00000167525|Q8NCQ7|PROCA1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.200927734375 3 334.185579 999.534909 NaN NaN NaN NaN NaN NaN NaN 100.87 1 96.711 96.211 97.211 -4.1594 0 0 0 0.23508 1 19830 19830 4.897 0.95262 1 + 43032 24151 28607 28626 42424 42424 0.03512268437839339 SPLSETKL 8 Unmodified _SPLSETKL_ 0 0 0 REV__nc|ENSG00000156299|Q13009-2|TIAM1 REV__nc|ENSG00000156299|Q13009-2|TIAM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2232971191406 2 437.74765 873.480748 -0.18318 -8.0188E-05 0.1628 7.1266E-05 -0.02038 -8.9215E-06 437.74765979206035 59.156 0.88085 56.246 55.784 56.665 -2.9105 34 24 2 0 0 0 0.58903 1 11415 11415 30.225 0 1 1675900 + 43033 17255 28608 28627 42425 42425 0.03894676286279264 SPLSETKL 8 Unmodified _SPLSETKL_ 0 0 0 REV__nc|ENSG00000156299|Q13009-2|TIAM1 REV__nc|ENSG00000156299|Q13009-2|TIAM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2231750488281 2 437.74765 873.480748 0.044901 1.9655E-05 -0.41632 -0.00018224 -0.37141 -0.00016259 437.74756607971966 59.506 0.55647 56.192 55.924 56.48 -3.3139 23 15 2 0 0 0 0.58903 1 11105 11105 38.151 0 1 1134300 + 43034 17255 28608 28627 42426 42426 0.03894676286279264 SPLSETKL 8 Unmodified _SPLSETKL_ 0 0 0 REV__nc|ENSG00000156299|Q13009-2|TIAM1 REV__nc|ENSG00000156299|Q13009-2|TIAM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2232360839844 2 437.74765 873.480748 -0.049137 -2.151E-05 0.10203 4.4665E-05 0.052897 2.3156E-05 437.74769345849097 59.458 0.62134 56.234 55.912 56.533 -3.2237 28 17 2 0 0 0 0.81042 1 11147 11147 30.225 0 1 1121800 + 43035 17255 28608 28627 42427 42427 0.03894676286279264 SPLSYRPV 8 Unmodified _SPLSYRPV_ 0 0 0 PKLR|p.V280Wfs*41|1|0.25|ENSG00000143627|chr1:155294609-155294609|C/-|frameshift_variant;PKLR|p.D339Tfs*2|1|0.39|ENSG00000143627|chr1:155294336-155294336|C/-|frameshift_variant;nc|ENSG00000143627|P30613-2|PKLR;ENSG00000143627|ENST00000342741|PKLR PKLR|p.V280Wfs*41|1|0.25|ENSG00000143627|chr1:155294609-155294609|C/-|frameshift_variant PKLR|p.V280Wfs*41|1|0.25|ENSG00000143627|chr1:155294609-155294609|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2439270019531 2 459.75581 917.497067 -0.052095 -2.3951E-05 0.21402 9.8396E-05 0.16192 7.4445E-05 459.7558997300659 97.888 0.86781 93.79 93.324 94.192 -4.0978 39 24 2 0 0 0 0.49114 1 19215 19215 28.487 6.7402 1 2327700 43036 4507 28609 28628 42428 42428 0.035018022430335805 SPLYMQKL 8 Unmodified _SPLYMQKL_ 0 0 0 REV__ENST00000415922.6_1_6:26638669-26638894:-|nuORF REV__ENST00000415922.6_1_6:26638669-26638894:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26678466796875 2 490.267696 978.520839 NaN NaN NaN NaN NaN NaN NaN 25.758 1 25.758 25.258 26.258 0 0 0 0 0.2343 1 4486 4486 0.62683 0.50396 1 + 43037 21459 28610 28629 42429 42429 0.03071899685221524 SPMVLSLTV 9 Unmodified _SPMVLSLTV_ 0 0 0 REV__TAB1|p.T433Pfs*9|2|0.37|ENSG00000100324|chr22:39428168-39428168|C/-|frameshift_variant REV__TAB1|p.T433Pfs*9|2|0.37|ENSG00000100324|chr22:39428168-39428168|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1752624511719 3 316.180778 945.520504 NaN NaN NaN NaN NaN NaN NaN 138.52 1 133.57 133.07 134.07 -4.952 0 0 0 0.23508 1 26636 26636 8.1555 1.4324 1 + 43038 14691 28611 28630 42430 42430 0.04556479965356175 SPMVLSLTV 9 Unmodified _SPMVLSLTV_ 0 0 0 REV__TAB1|p.T433Pfs*9|2|0.37|ENSG00000100324|chr22:39428168-39428168|C/-|frameshift_variant REV__TAB1|p.T433Pfs*9|2|0.37|ENSG00000100324|chr22:39428168-39428168|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1818542480469 3 316.180778 945.520504 NaN NaN NaN NaN NaN NaN NaN 137.9 1 133.06 132.56 133.56 -4.84 0 0 0 0.23508 1 26574 26574 4.897 0 1 + 43039 14691 28611 28630 42431 42431 0.04556479965356175 SPNIAMNKEQK 11 Unmodified _SPNIAMNKEQK_ 0 0 0 REV__CON__P02663 REV__CON__P02663 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7489013671875 2 630.324262 1258.63397 NaN NaN NaN NaN NaN NaN NaN 38.884 1 38.884 38.384 39.384 0 0 0 0 0.22683 1 7212 7212 10.8 0 1 + + 43040 13518 28612 28631 42432 42432 0.01499923340429632 SPNSSPVP 8 Unmodified _SPNSSPVP_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3883666992188 1 784.383559 783.376283 0.55082 0.00043205 0.16277 0.00012767 0.71359 0.00055973 784.383569730959 37.775 1.2937 37.775 37.06 38.354 0 79 36 3 0 0 0 8448 2 6878 6878;7057 0.25148 0 1 8153900 43041 3249 28613 28632 42433;42434 42433 -0.02407025470415647 SPNSSPVP 8 Unmodified _SPNSSPVP_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3875732421875 1 784.383559 783.376283 0.28989 0.00022738 0.24137 0.00018933 0.53126 0.00041671 784.3837015817328 40.257 1.3429 37.623 36.914 38.257 -2.6348 82 37 3 0 0 0 8448 2 7392 7392;7588 0.62683 0 1 7948700 43042 3249 28613 28632 42435;42436 42435 -0.02407025470415647 SPNSSPVP 8 Unmodified _SPNSSPVP_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3883666992188 1 784.383559 783.376283 0.23154 0.00018162 0.41269 0.00032371 0.64423 0.00050533 784.3837515836874 40.125 1.2028 37.585 37.039 38.242 -2.5398 80 33 3 0 0 0 8448 2 7090 7090;7272 0.68139 0.27313 1 9886900 43043 3249 28613 28632 42437;42438 42437 -0.02407025470415647 SPNSSPVP 8 Unmodified _SPNSSPVP_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3869018554688 1 784.383559 783.376283 0.29466 0.00023112 0.36493 0.00028624 0.65958 0.00051737 784.3837568888655 40.146 1.3005 37.657 37.019 38.319 -2.4896 78 36 3 0 0 0 8448 1 7084 7084 0.25148 0 1 8910900 43044 3249 28613 28632 42439 42439 -0.02407025470415647 SPPAPRPK 8 Unmodified _SPPAPRPK_ 0 0 0 ENSG00000099625|ENST00000650044|CBARP;ENST00000590083.5_1_19:1229180-1230152:-|nuORF ENSG00000099625|ENST00000650044|CBARP ENSG00000099625|ENST00000650044|CBARP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2383728027344 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 112.77 1 108.5 108 109 -4.2725 0 0 0 0.21486 1 21714 21714 4.3292 0 1 43045 1897 28614 28633 42440 42440 0.05653239308469438 SPPAVRRPSW 10 Unmodified _SPPAVRRPSW_ 0 0 0 REV__ENST00000538731.2_1_12:132671869-132672118:-|nuORF REV__ENST00000538731.2_1_12:132671869-132672118:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3126220703125 2 576.817264 1151.61998 0.6625 0.00038214 -0.50785 -0.00029293 0.15466 8.9208E-05 577.3191837776816 122.06 0.10307 117.37 117.3 117.4 -4.6873 4 2 2 0 0 0 0.87854 1 23426 23426 5.7319 2.9967 1 723990 + 43046 22843 28615 28634 42441 42441 0.05023058694314386 SPPGSKSY 8 Unmodified _SPPGSKSY_ 0 0 0 REV__ENSG00000160051|ENST00000291358|IQCC REV__ENSG00000160051|ENST00000291358|IQCC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.1073913574219 2 411.703243 821.391933 -0.32664 -0.00013448 0.65423 0.00026935 0.32759 0.00013487 411.7034041537966 40.396 1.6558 37.906 37.301 38.957 -2.4896 81 46 2 0 0 0 0.9455 1 7419 7419 11.64 1.5664 1 1793800 + 43047 17390 28616 28635 42442 42442 -0.02590738953381333 SPPGSKSY 8 Unmodified _SPPGSKSY_ 0 0 0 REV__ENSG00000160051|ENST00000291358|IQCC REV__ENSG00000160051|ENST00000291358|IQCC MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 411.703243 821.391933 0.11639 4.7916E-05 0.092058 3.7901E-05 0.20844 8.5817E-05 411.7031638838325 37.931 1.5072 37.931 37.06 38.567 0 -0.096525 -0.00022188 NaN 11.64 71 42 2 NaN NaN NaN NaN 0 NaN NaN 0 1963900 + 43048 17390 28616 28635 -0.02590738953381333 SPPGSKSY 8 Unmodified _SPPGSKSY_ 0 0 0 REV__ENSG00000160051|ENST00000291358|IQCC REV__ENSG00000160051|ENST00000291358|IQCC MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 411.703243 821.391933 -0.044437 -1.8295E-05 0.10093 4.1555E-05 0.056498 2.326E-05 411.7032600152085 40.74 1.5427 38.2 37.323 38.866 -2.5398 0.17275 -0.00021457 NaN 11.64 66 43 2 NaN NaN NaN NaN 0 NaN NaN 0 2297800 + 43049 17390 28616 28635 -0.02590738953381333 SPPLDSAEN 9 Unmodified _SPPLDSAEN_ 0 0 0 COL5A3|p.P277L|1|0.03|ENSG00000080573|chr19:10003584-10003584|G/A|missense_variant COL5A3|p.P277L|1|0.03|ENSG00000080573|chr19:10003584-10003584|G/A|missense_variant COL5A3|p.P277L|1|0.03|ENSG00000080573|chr19:10003584-10003584|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2586669921875 2 465.214172 928.413791 NaN NaN NaN NaN NaN NaN NaN 148.14 1 143.08 142.58 143.58 -5.0595 0 0 0 0.22251 1 28691 28691 16.942 0 1 43050 629 28617 28636 42443 42443 -0.053279789954672196 SPPLRTWLGP 10 Unmodified _SPPLRTWLGP_ 0 0 0 REV__ENST00000575301.5_1_17:7308303-7308447:+|nuORF REV__ENST00000575301.5_1_17:7308303-7308447:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2135009765625 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 15.437 1 15.437 14.937 15.937 0 0 0 0 0.22588 1 2349 2349 8.9762 3.1928 1 + 43051 23202 28618 28637 42444 42444 0.06217424605551969 SPPPGKKRL 9 Unmodified _SPPPGKKRL_ 0 0 0 nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ADCY10|p.N1597Tfs*4|1|0.07|ENSG00000143199|chr1:167809721-167809721|T/-|frameshift_variant;ENSG00000143199|ENST00000367851|ADCY10;nc|ENSG00000143199|Q96PN6-3|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2669677734375 2 490.306001 978.597449 NaN NaN NaN NaN NaN NaN NaN 137.72 1 132.8 132.3 133.3 -4.9216 0 0 0 0.23508 1 26476 26476 11.64 0.52583 1 43052 70 28619 28638 42445 42445 0.1072945929670368 SPPPPAGH 8 Unmodified _SPPPPAGH_ 0 0 0 ENSG00000170549|ENST00000302006|IRX1 ENSG00000170549|ENST00000302006|IRX1 ENSG00000170549|ENST00000302006|IRX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 380.5794677734375 2 380.192845 758.371138 NaN NaN NaN NaN NaN NaN NaN 178.98 1 174.12 173.62 174.62 -4.8686 0 0 0 0.23711 1 35639 35639 0.62683 0 1 43053 6079 28620 28639 42446 42446 -0.017712845423830004 SPPPSRRS 8 Unmodified _SPPPSRRS_ 0 0 0 REV__nc|ENSG00000197959|Q9UQ16-4|DNM3 REV__nc|ENSG00000197959|Q9UQ16-4|DNM3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 442.2433776855469 2 442.240858 882.467164 NaN NaN NaN NaN NaN NaN NaN 56.864 1 53.97 53.47 54.47 -2.8944 0 0 0 0.2074 1 10906 10906 19.439 0 1 + 43054 19378 28621 28640 42447 42447 0.021228632977113193 SPPSGGIWK 9 Unmodified _SPPSGGIWK_ 0 0 0 REV__GABBR1|p.A575Sfs*2|3|0.31|ENSG00000204681|chr6:29609366-29609367|-/G|frameshift_variant REV__GABBR1|p.A575Sfs*2|3|0.31|ENSG00000204681|chr6:29609366-29609367|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2490539550781 2 464.747985 927.481417 -0.025214 -1.1718E-05 0.13554 6.2993E-05 0.11033 5.1275E-05 464.74827170890916 97.211 0.38076 93.113 92.873 93.254 -4.0978 13 10 2 0 0 0 0.25976 1 19070 19070 17.113 0 1 886790 + 43055 23557 28622 28641 42448 42448 0.014775157260032756 SPPVPAPP 8 Unmodified _SPPVPAPP_ 0 0 0 ENST00000555997.1_1_14:69255564-69255801:-|nuORF ENST00000555997.1_1_14:69255564-69255801:-|nuORF ENST00000555997.1_1_14:69255564-69255801:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2123718261719 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 53.192 1 50.105 49.605 50.605 -3.0876 0 0 0 0.2343 1 9789 9789 0.12286 0 1 43056 11235 28623 28642 42449 42449 0.02215056777231439 SPQERPPP 8 Unmodified _SPQERPPP_ 0 0 0 ENSG00000074181|ENST00000263388|NOTCH3 ENSG00000074181|ENST00000263388|NOTCH3 ENSG00000074181|ENST00000263388|NOTCH3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7492980957031 2 454.235242 906.45593 0.17864 8.1145E-05 -0.022737 -1.0328E-05 0.1559 7.0817E-05 454.235198993261 17.008 1.8935 17.008 16.164 18.057 0 85 53 2 0 0 0 0.86749 1 2697 2697 21.747 0 1 2427700 43057 1493 28624 28643 42450 42450 -0.0010395879643283479 SPQQPVPY 8 Unmodified _SPQQPVPY_ 0 0 0 SCML2|p.T503P|1|0.61|ENSG00000102098|chrX:18247832-18247832|T/G|missense_variant SCML2|p.T503P|1|0.61|ENSG00000102098|chrX:18247832-18247832|T/G|missense_variant SCML2|p.T503P|1|0.61|ENSG00000102098|chrX:18247832-18247832|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2326354980469 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 178.62 1 173.71 173.21 174.21 -4.9088 0 0 0 0.21486 1 35634 35634 0.79363 0 1 43058 25639 28625 28644 42451 42451 -0.010864770279567892 SPQRSPCY 8 Unmodified _SPQRSPCY_ 0 0 0 REV__ENST00000356554.7_1_1:117910109-117910343:+|nuORF REV__ENST00000356554.7_1_1:117910109-117910343:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 469.2145080566406 2 469.213452 936.412351 NaN NaN NaN NaN NaN NaN NaN 80.049 1 76.539 76.039 77.039 -3.5102 0 0 0 0.23312 1 15633 15633 0.68139 0.6174 1 + 43059 20813 28626 28645 42452 42452 -0.05839891565221933 SPRCKRTV 8 Unmodified _SPRCKRTV_ 0 0 0 ENSG00000164283|ENST00000381405|ESM1;nc|ENSG00000164283|Q9NQ30-2|ESM1 ENSG00000164283|ENST00000381405|ESM1 ENSG00000164283|ENST00000381405|ESM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.18084716796875 3 316.179883 945.517819 NaN NaN NaN NaN NaN NaN NaN 133.15 1 133.15 132.65 133.65 0 0 0 0 0.21486 1 26337 26337 3.5965 1.098 1 43060 5527 28627 28646 42453 42453 0.042880693510710444 SPRGSTDSL 9 Unmodified _SPRGSTDSL_ 0 0 0 ENSG00000111252|ENST00000341259|SH2B3;SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant;SH2B3|p.L347Cfs*26|1|0.23|ENSG00000111252|chr12:111447341-111447341|G/-|frameshift_variant ENSG00000111252|ENST00000341259|SH2B3 ENSG00000111252|ENST00000341259|SH2B3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2273254394531 2 460.227613 918.440674 NaN NaN NaN NaN NaN NaN NaN 102.35 1 98.16 97.66 98.66 -4.1861 0 0 0 0.23508 1 20114 20114 10.074 0.72649 1 43061 2611 28628 28647 42454 42454 -0.021808703842907562 SPRISPHI 8 Unmodified _SPRISPHI_ 0 0 0 REV__ENST00000501520.1_1_16:28303156-28303378:-|nuORF REV__ENST00000501520.1_1_16:28303156-28303378:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7595520019531 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 133.07 1 133.07 132.57 133.57 0 0 0 0 0.22692 1 26320 26320 0.68139 0.42991 1 + 43062 22432 28629 28648 42455 42455 0.051766243371730525 SPRRPRPP 8 Unmodified _SPRRPRPP_ 0 0 0 ENST00000510442.1_2_5:32585827-32586016:+|nuORF ENST00000510442.1_2_5:32585827-32586016:+|nuORF ENST00000510442.1_2_5:32585827-32586016:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7864990234375 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 15.429 1 14.207 13.707 14.707 -1.2219 0 0 0 0.21486 1 2159 2159 5.7604 0 1 43063 10742 28630 28649 42456 42456 0.07466537696939213 SPSEREDP 8 Unmodified _SPSEREDP_ 0 0 0 REV__nc|ENSG00000081189|Q06413-4|MEF2C REV__nc|ENSG00000081189|Q06413-4|MEF2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23797607421875 2 458.703971 915.393389 0.086562 3.9706E-05 -0.20479 -9.394E-05 -0.11823 -5.4234E-05 458.7038322344006 56.088 0.70304 56.088 55.904 56.607 0 23 19 2 0 0 0 0.96284 1 10747 10747 13.508 0 1 1006200 + 43064 14428 28631 28650 42457 42457 -0.06769149655281126 SPSFAPCPD 9 Unmodified _SPSFAPCPD_ 0 0 0 ENST00000400147.6_1_18:3498882-3499149:-|nuORF ENST00000400147.6_1_18:3498882-3499149:-|nuORF ENST00000400147.6_1_18:3498882-3499149:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2413024902344 2 460.694561 919.374568 0.18618 8.5771E-05 -1.4471 -0.00066666 -1.2609 -0.00058089 460.6937312316675 27.762 0.66968 26.007 25.72 26.39 -1.7552 44 18 3 0 0 0 0.84208 1 4716 4716 3.9444 0 1 2197300 43065 9504 28632 28651 42458 42458 -0.08834402550689902 SPSFTTPLPP 10 Unmodified _SPSFTTPLPP_ 0 0 0 ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant;nc|ENSG00000116539|Q9NR48|ASH1L ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2711181640625 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 83.949 1 80.039 79.539 80.539 -3.9093 0 0 0 2.8426 1 15953 15953 6.6304 0.32528 1 43066 232 28633 28652 42459 42459 0.013946343490943036 SPSLSATEVA 10 Unmodified _SPSLSATEVA_ 0 0 0 REV__nc|ENSG00000038532|Q2KHT3-3|CLEC16A REV__nc|ENSG00000038532|Q2KHT3-3|CLEC16A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2447814941406 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 15.446 1 14.332 13.832 14.832 -1.1142 0 0 0 0.22588 1 2379 2379 6.7232 0.96273 1 + 43067 14042 28634 28653 42460 42460 -0.005428329272831434 SPSLSQAPS 9 Unmodified _SPSLSQAPS_ 0 0 0 REV__ENST00000270190.8_2_21:37529109-37537056:+|nuORF REV__ENST00000270190.8_2_21:37529109-37537056:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2190246582031 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 78.728 1 75.052 74.552 75.552 -3.676 0 0 0 0.19687 1 14997 14997 8.1555 0 1 + 43068 20268 28635 28654 42461 42461 -0.017353712702401936 SPSPVPSPA 9 Unmodified _SPSPVPSPA_ 0 0 0 nc|ENSG00000100842|O43281-3|EFS;nc|ENSG00000100842|O43281-2|EFS;ENSG00000100842|ENST00000216733|EFS nc|ENSG00000100842|O43281-3|EFS nc|ENSG00000100842|O43281-3|EFS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 421.2306213378906 2 419.718893 837.423233 0.31818 0.00013355 -0.23603 -9.9066E-05 0.082148 3.4479E-05 419.7187530684227 49.318 2.887 49.318 48.244 51.131 0 256 82 4 0 0 0 0.26282 1 9432 9432 4.7159 0 1 121660000 43069 2017 28636 28655 42462 42462 -0.0019816591927792615 SPSQMDVEVV 10 Unmodified _SPSQMDVEVV_ 0 0 0 TOX4|p.L558V|1|0.44|ENSG00000092203|chr14:21495259-21495259|T/G|missense_variant TOX4|p.L558V|1|0.44|ENSG00000092203|chr14:21495259-21495259|T/G|missense_variant TOX4|p.L558V|1|0.44|ENSG00000092203|chr14:21495259-21495259|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 364.1846618652344 3 364.174352 1089.50123 NaN NaN NaN NaN NaN NaN NaN 109.42 1 105.24 104.74 105.74 -4.1826 0 0 0 0.22588 1 21058 21058 1.9064 0 1 43070 25872 28637 28656 42463 42463 -0.03994521116192118 SPSRHKSKSK 10 Unmodified _SPSRHKSKSK_ 0 0 0 ENSG00000116350|ENST00000373795|SRSF4 ENSG00000116350|ENST00000373795|SRSF4 ENSG00000116350|ENST00000373795|SRSF4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21917724609375 3 381.219395 1140.63635 NaN NaN NaN NaN NaN NaN NaN 26.466 1 24.544 24.044 25.044 -1.9222 0 0 0 2.8426 1 4386 4386 1.9064 1.8331 1 43071 2925 28638 28657 42464 42464 0.07166139860419207 SPSRLGCPV 9 Unmodified _SPSRLGCPV_ 0 0 0 REV__ENST00000360222.8_1_19:14857708-14876689:-|nuORF REV__ENST00000360222.8_1_19:14857708-14876689:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.239013671875 2 458.23947 914.464386 -0.083272 -3.8159E-05 0.36748 0.00016839 0.28421 0.00013023 458.2396660907569 18.819 0.61798 17.508 17.142 17.76 -1.3109 28 17 2 0 0 0 0.62102 1 3041 3041 11.64 0 1 848200 + 43072 20861 28639 28658 42465 42465 0.003732718485480291 SPSVFLSH 8 Unmodified _SPSVFLSH_ 0 0 0 ENST00000405914.1_1_2:26204855-26205579:-|nuORF ENST00000405914.1_1_2:26204855-26205579:-|nuORF ENST00000405914.1_1_2:26204855-26205579:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2294921875 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 112.89 1 108.62 108.12 109.12 -4.2725 0 0 0 0.21486 1 21737 21737 8.5933 0 1 43073 9537 28640 28659 42466 42466 -0.0021045968237558554 SPSVLDQPL 9 Unmodified _SPSVLDQPL_ 0 0 0 REV__ENST00000583577.1_1_17:56283442-56283917:-|nuORF REV__ENST00000583577.1_1_17:56283442-56283917:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74456787109375 2 478.258382 954.502212 0.24731 0.00011828 0.054652 2.6138E-05 0.30196 0.00014442 478.2582765288923 124.6 0.67231 119.95 119.68 120.35 -4.6495 27 18 2 0 0 0 0.52414 1 23930 23930 18.135 0 1 1043200 + 43074 13929 28641 28660 42467 42467 0.023140613150076206 SPSVVYPAAA 10 Unmodified _SPSVVYPAAA_ 0 0 0 REV__ENSG00000148411|ENST00000277554|NACC2 REV__ENSG00000148411|ENST00000277554|NACC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2530517578125 2 481.2531 960.491647 0.28221 0.00013581 0.1207 5.8085E-05 0.40291 0.0001939 481.25311837758886 70.408 0.77477 66.941 66.569 67.343 -3.467 34 21 2 0 0 0 0.37773 1 13370 13370 32.305 3.8186 1 2969000 + 43075 16976 28642 28661 42468 42468 0.009820786605587273 SPSWESWF 8 Unmodified _SPSWESWF_ 0 0 0 REV__nc|ENSG00000168685|P16871-4|IL7R REV__nc|ENSG00000168685|P16871-4|IL7R MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.01702880859375 3 342.483625 1024.42905 NaN NaN NaN NaN NaN NaN NaN 58.472 1 55.267 54.767 55.767 -3.2052 0 0 0 0.21486 1 10913 10913 1.6526 0 1 + 43076 18045 28643 28662 42469 42469 -0.082190674076287 SPTAELGVGV 10 Unmodified _SPTAELGVGV_ 0 0 0 REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25048828125 2 465.250557 928.486562 0.13197 6.1398E-05 -0.025199 -1.1724E-05 0.10677 4.9675E-05 465.25041396622487 141.28 0.71574 141.28 140.96 141.67 0 31 20 2 0 0 0 0.072053 2 28145 28145;28198 74.929 12.356 1 7457000 + 43077 18299 28644 28663 42470;42471 42470 0.019457747979799933 SPTAELGVGV 10 Unmodified _SPTAELGVGV_ 0 0 0 REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25054931640625 2 465.250557 928.486562 0.018513 8.613E-06 -0.015609 -7.2622E-06 0.0029033 1.3508E-06 465.25043988460214 146.08 0.72443 141.39 141.09 141.81 -4.6868 47 20 3 0 0 0 0.069049 2 28968 28968;29018 78.149 15.577 1 10205000 + 43078 18299 28644 28663 42472;42473 42472 0.019457747979799933 SPTAELGVGV 10 Unmodified _SPTAELGVGV_ 0 0 0 REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2504577636719 2 465.250557 928.486562 0.073203 3.4058E-05 -0.16092 -7.487E-05 -0.087722 -4.0813E-05 465.25042840454887 146.58 0.71353 141.47 141.11 141.82 -5.1108 37 20 2 0 0 0 0.069049 1 28331 28331 78.149 16.792 1 7563000 + 43079 18299 28644 28663 42474 42474 0.019457747979799933 SPTAELGVGV 10 Unmodified _SPTAELGVGV_ 0 0 0 REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2503356933594 2 465.250557 928.486562 0.32002 0.00014889 -0.36322 -0.00016899 -0.043204 -2.0101E-05 465.2503211409724 146.44 0.80167 141.44 141.02 141.82 -5 44 22 3 0 0 0 0.069049 2 28315 28315;28365 78.149 12.914 1 6211000 + 43080 18299 28644 28663 42475;42476 42475 0.019457747979799933 SPTAELGVGV 10 Unmodified _SPTAELGVGV_ 0 0 0 REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 465.250557 928.486562 0.13197 6.1398E-05 -0.025199 -1.1724E-05 0.10677 4.9675E-05 465.25041396622487 141.28 0.71574 141.28 140.96 141.67 0 -0.11402 0.00011644 NaN 78.149 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 7457000 + 43081 18299 28644 28663 0.019457747979799933 SPTAELGVGV 10 Unmodified _SPTAELGVGV_ 0 0 0 REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.250557 928.486562 0.073203 3.4058E-05 -0.16092 -7.487E-05 -0.087722 -4.0813E-05 465.25042840454887 146.58 0.71353 141.47 141.11 141.82 -5.1108 0.073785 -9.8479E-06 NaN 78.149 37 20 2 NaN NaN NaN NaN 0 NaN NaN 0 7563000 + 43082 18299 28644 28663 0.019457747979799933 SPTAELGVGV 10 Unmodified _SPTAELGVGV_ 0 0 0 REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 465.250557 928.486562 0.32002 0.00014889 -0.36322 -0.00016899 -0.043204 -2.0101E-05 465.2503211409724 146.44 0.80167 141.44 141.02 141.82 -5 0.04136 -0.00019809 NaN 78.149 44 22 3 NaN NaN NaN NaN 0 NaN NaN 0 6211000 + 43083 18299 28644 28663 0.019457747979799933 SPTAQESYSQY 11 Unmodified _SPTAQESYSQY_ 0 0 0 nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10 nc|ENSG00000182872|P98175-4|RBM10 nc|ENSG00000182872|P98175-4|RBM10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7772216796875 2 630.772582 1259.53061 NaN NaN NaN NaN NaN NaN NaN 103.77 1 99.426 98.926 99.926 -4.346 0 0 0 0.21872 1 19878 19878 14.405 1.3629 1 43084 6816 28645 28664 42477 42477 -0.08877285566359205 SPTGRRCGSCQ 11 Unmodified _SPTGRRCGSCQ_ 0 0 0 nc|ENSG00000163689|Q6ZVT6|CFAP20DC;ENSG00000163689|ENST00000482387|CFAP20DC;ENST00000468415.6_1_3:58739536-58855213:-|nuORF nc|ENSG00000163689|Q6ZVT6|CFAP20DC nc|ENSG00000163689|Q6ZVT6|CFAP20DC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3114624023438 2 576.255856 1150.49716 0.040115 2.3117E-05 3.245 0.00187 3.2851 0.0018931 576.7596962207986 138.23 0.17281 133.58 133.5 133.67 -4.6413 5 4 2 0 0 0 0.93546 1 27277 27277 4.897 3.0528 1 2341500 43085 5453 28646 28665 42478 42478 -0.07206889090912227 SPTISVTGSA 10 Unmodified _SPTISVTGSA_ 0 0 0 REV__ENST00000437600.8_1_7:101926770-101927016:+|nuORF REV__ENST00000437600.8_1_7:101926770-101927016:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2386779785156 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 71.704 1 68.455 67.955 68.955 -3.2492 0 0 0 0.18733 1 13966 13966 30.637 3.7529 1 + 43086 21678 28647 28666 42479 42479 0.0033318441828669165 SPTQCSLTA 9 Unmodified _SPTQCSLTA_ 0 0 0 nc|ENSG00000063322|Q9NX70-2|MED29 nc|ENSG00000063322|Q9NX70-2|MED29 nc|ENSG00000063322|Q9NX70-2|MED29 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7501525878906 2 454.213117 906.411682 -0.057331 -2.6041E-05 0.1519 6.8994E-05 0.094568 4.2954E-05 454.21317613460786 46.545 0.93648 43.68 43.275 44.211 -2.8653 45 26 2 0 0 0 0.42844 1 8426 8426 24.021 2.2739 1 2180600 43087 12224 28648 28667 42480 42480 -0.045267310049325715 SPTQCSLTA 9 Unmodified _SPTQCSLTA_ 0 0 0 nc|ENSG00000063322|Q9NX70-2|MED29 nc|ENSG00000063322|Q9NX70-2|MED29 nc|ENSG00000063322|Q9NX70-2|MED29 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 454.213117 906.411682 -0.13658 -6.2035E-05 0.31235 0.00014187 0.17577 7.9838E-05 454.21322176050467 46.42 0.79995 43.579 43.206 44.006 -2.8409 -0.080335 0.00021581 NaN 24.021 46 22 3 NaN NaN NaN NaN 0 NaN NaN 0 3256500 43088 12224 28648 28667 -0.045267310049325715 SPTQCSLTA 9 Unmodified _SPTQCSLTA_ 0 0 0 nc|ENSG00000063322|Q9NX70-2|MED29 nc|ENSG00000063322|Q9NX70-2|MED29 nc|ENSG00000063322|Q9NX70-2|MED29 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 454.213117 906.411682 -0.1344 -6.1045E-05 0.26487 0.00012031 0.13048 5.9264E-05 454.21323986775417 46.544 0.76544 43.677 43.3 44.066 -2.8666 0.018054 0.00017268 NaN 24.021 38 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1557900 43089 12224 28648 28667 -0.045267310049325715 SPTRERSP 8 Unmodified _SPTRERSP_ 0 0 0 ENSG00000161217|ENST00000431016|PCYT1A ENSG00000161217|ENST00000431016|PCYT1A ENSG00000161217|ENST00000431016|PCYT1A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24310302734375 2 465.243598 928.472643 NaN NaN NaN NaN NaN NaN NaN 27.374 1 25.452 24.952 25.952 -1.9222 0 0 0 0.23182 1 4575 4575 3.5871 0 1 43090 5286 28649 28668 42481 42481 0.0055454208951459805 SPTSGGAI 8 Unmodified _SPTSGGAI_ 0 0 0 REV__PROSER1|p.T447A|1|0.2|ENSG00000120685|chr13:39013913-39013913|T/C|missense_variant REV__PROSER1|p.T447A|1|0.2|ENSG00000120685|chr13:39013913-39013913|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.2742919921875 2 345.176861 688.339169 NaN NaN NaN NaN NaN NaN NaN 4.4501 1 4.4501 3.9501 4.9501 0 0 0 0 0.21486 1 89 89 0.79363 0 1 + 43091 15627 28650 28669 42482 42482 -0.017466970161990503 SPVDDNLVP 9 Unmodified _SPVDDNLVP_ 0 0 0 REV__ENSG00000094963|ENST00000209929|FMO2 REV__ENSG00000094963|ENST00000209929|FMO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7330322265625 2 478.24019 954.465826 -0.036935 -1.7664E-05 1.3654 0.00065299 1.3285 0.00063533 478.24074174626116 18.516 0.27958 17.205 17.037 17.317 -1.3109 13 7 2 0 0 0 0.15889 1 3019 3019 2.6312 1.7561 1 2132300 + 43092 14599 28651 28670 42483 42483 -0.013228155817159859 SPVDDNLVP 9 Unmodified _SPVDDNLVP_ 0 0 0 REV__ENSG00000094963|ENST00000209929|FMO2 REV__ENSG00000094963|ENST00000209929|FMO2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.24019 954.465826 -0.036935 -1.7664E-05 1.3654 0.00065299 1.3285 0.00063533 478.24074174626116 18.516 0.27958 17.205 17.037 17.317 -1.3109 -0.0011913 -0.00034048 NaN 2.6312 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2132300 + 43093 14599 28651 28670 -0.013228155817159859 SPVLLEEQ 8 Unmodified _SPVLLEEQ_ 0 0 0 REV__ENST00000409512.5_1_2:143743523-143787200:+|nuORF REV__ENST00000409512.5_1_2:143743523-143787200:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 459.2458801269531 2 457.745108 913.475663 -0.47318 -0.0002166 0.60526 0.00027705 0.13208 6.0458E-05 457.7453354799359 106.6 1.2181 102.34 101.62 102.84 -4.2638 71 34 4 0 0 0 8448 1 20989 20989 9.544 5.9569 1 16430000 + 43094 21414 28652 28671 42484 42484 0.015463724236724374 SPVPLWVSGSL 11 Unmodified _SPVPLWVSGSL_ 0 0 0 ENST00000594030.2_1_19:53930128-53930377:+|nuORF ENST00000594030.2_1_19:53930128-53930377:+|nuORF ENST00000594030.2_1_19:53930128-53930377:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.212890625 3 381.213246 1140.61791 NaN NaN NaN NaN NaN NaN NaN 51.168 1 48.123 47.623 48.623 -3.0453 0 0 0 0.23018 1 9391 9391 4.1166 1.6181 1 43095 11650 28653 28672 42485 42485 0.05322585165868077 SPVPSSQLD 9 Unmodified _SPVPSSQLD_ 0 0 0 REV__FBLIM1|p.P142Rfs*59|1|0.38|ENSG00000162458|chr1:15767546-15767546|C/-|frameshift_variant REV__FBLIM1|p.P142Rfs*59|1|0.38|ENSG00000162458|chr1:15767546-15767546|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2471618652344 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 27.009 1 25.087 24.587 25.587 -1.9222 0 0 0 0.19687 1 4494 4494 8.1555 4.5685 1 + 43096 23529 28654 28673 42486 42486 -0.01691102098743613 SPVSSLGTSLY 11 Unmodified _SPVSSLGTSLY_ 0 0 0 REV__ENST00000546869.1_1_12:113614643-113615134:-|nuORF REV__ENST00000546869.1_1_12:113614643-113615134:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 370.8598327636719 3 370.860761 1109.56045 NaN NaN NaN NaN NaN NaN NaN 9.6255 1 8.5908 8.0908 9.0908 -1.0347 0 0 0 0.23698 1 995 995 0 0 1 + 43097 22899 28655 28674 42487 42487 0.010056981696607181 SPVVAPPP 8 Unmodified _SPVVAPPP_ 0 0 0 REV__SIGLEC8|p.A436V|1|0.36|ENSG00000105366|chr19:51452572-51452572|G/A|missense_variant REV__SIGLEC8|p.A436V|1|0.36|ENSG00000105366|chr19:51452572-51452572|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 383.72613525390625 2 382.221072 762.42759 -0.17229 -6.5853E-05 0.17286 6.607E-05 0.0005676 2.1695E-07 382.22108752733504 61.88 2.1143 58.919 58.444 60.558 -2.9614 141 60 4 0 0 0 8448 1 11896 11896 8.966 5.379 1 183610000 + 43098 24617 28656 28675 42488 42488 0.03687343294279799 SPVVAPPP 8 Unmodified _SPVVAPPP_ 0 0 0 REV__SIGLEC8|p.A436V|1|0.36|ENSG00000105366|chr19:51452572-51452572|G/A|missense_variant REV__SIGLEC8|p.A436V|1|0.36|ENSG00000105366|chr19:51452572-51452572|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 382.221072 762.42759 -0.4271 -0.00016325 0.57941 0.00022146 0.15231 5.8216E-05 382.2212462231096 59.124 2.8476 59.124 58.477 61.325 0 0.1603 0.00022986 NaN 8.966 148 80 5 NaN NaN NaN NaN 0 NaN NaN 0 137600000 + 43099 24617 28656 28675 0.03687343294279799 SPVVAPPP 8 Unmodified _SPVVAPPP_ 0 0 0 REV__SIGLEC8|p.A436V|1|0.36|ENSG00000105366|chr19:51452572-51452572|G/A|missense_variant REV__SIGLEC8|p.A436V|1|0.36|ENSG00000105366|chr19:51452572-51452572|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 382.221072 762.42759 -0.17229 -6.5853E-05 0.17286 6.607E-05 0.0005676 2.1695E-07 382.22108752733504 61.88 2.1143 58.919 58.444 60.558 -2.9614 -0.045486 -8.0928E-05 NaN 8.966 141 60 4 NaN NaN NaN NaN 0 NaN NaN 0 183610000 + 43100 24617 28656 28675 0.03687343294279799 SPVVAPPP 8 Unmodified _SPVVAPPP_ 0 0 0 REV__SIGLEC8|p.A436V|1|0.36|ENSG00000105366|chr19:51452572-51452572|G/A|missense_variant REV__SIGLEC8|p.A436V|1|0.36|ENSG00000105366|chr19:51452572-51452572|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 382.221072 762.42759 0.13022 4.9772E-05 -0.069695 -2.6639E-05 0.060522 2.3133E-05 382.22100785214604 62.272 1.9715 58.902 58.462 60.434 -3.3694 -0.061673 -0.00026635 NaN 8.966 131 55 4 NaN NaN NaN NaN 0 NaN NaN 0 144360000 + 43101 24617 28656 28675 0.03687343294279799 SPVVAPPP 8 Unmodified _SPVVAPPP_ 0 0 0 REV__SIGLEC8|p.A436V|1|0.36|ENSG00000105366|chr19:51452572-51452572|G/A|missense_variant REV__SIGLEC8|p.A436V|1|0.36|ENSG00000105366|chr19:51452572-51452572|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 382.221072 762.42759 -0.45779 -0.00017498 0.51916 0.00019844 0.061373 2.3458E-05 382.2212365358051 62.15 2.2793 58.911 58.381 60.66 -3.2395 -0.053141 0.0001838 NaN 8.966 149 65 5 NaN NaN NaN NaN 0 NaN NaN 0 166260000 + 43102 24617 28656 28675 0.03687343294279799 SPWFQWQMRWV 11 Unmodified _SPWFQWQMRWV_ 0 0 0 REV__ENST00000464839.5_1_1:89615102-89615213:-|nuORF REV__ENST00000464839.5_1_1:89615102-89615213:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 518.0135498046875 3 517.583568 1549.72887 NaN NaN NaN NaN NaN NaN NaN 171.26 1 166.35 165.85 166.85 -4.9149 0 0 0 0.22632 1 33902 33902 0.0059557 0 1 + 43103 21942 28657 28676 42489 42489 -0.024000983977430224 SPWTRWWQYFI 11 Unmodified _SPWTRWWQYFI_ 0 0 0 OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant OR4C11|p.P260Rfs*28|1|0.31|ENSG00000172188|chr11:55603595-55603595|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3848266601562 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 127.63 1 123.01 122.51 123.51 -4.6172 0 0 0 0.22632 1 25167 25167 0.026206 0 1 43104 12728 28658 28677 42490 42490 -0.005158718658321959 SPYITGHVLV 10 Unmodified _SPYITGHVLV_ 0 0 0 ENSG00000145439|ENST00000306193|CBR4 ENSG00000145439|ENST00000306193|CBR4 ENSG00000145439|ENST00000306193|CBR4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7864990234375 2 543.303124 1084.5917 0.33304 0.00018094 0.10041 5.4552E-05 0.43344 0.00023549 543.3031469472272 126.48 0.81723 126.48 126.03 126.85 0 44 22 3 0 0 0 0.67319 1 25020 25020 13.906 1.3745 1 6767800 43105 4608 28659 28678 42491 42491 0.05278315994382865 SPYVPNTLA 9 Unmodified _SPYVPNTLA_ 0 0 0 REV__ENSG00000109991|ENST00000263314|P2RX3 REV__ENSG00000109991|ENST00000263314|P2RX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7794189453125 2 481.2531 960.491647 -0.1499 -7.2139E-05 -1.077 -0.00051832 -1.2269 -0.00059046 481.2530802264014 25.602 0.65879 23.748 23.638 24.297 -1.8534 27 18 3 0 0 0 0.45972 1 4237 4237 8.1555 0 1 696730 + 43106 15185 28660 28679 42492 42492 0.009820786605587273 SQAGGRSC 8 Unmodified _SQAGGRSC_ 0 0 0 ENST00000376494.1_1_13:99373362-99378793:-|nuORF ENST00000376494.1_1_13:99373362-99378793:-|nuORF ENST00000376494.1_1_13:99373362-99378793:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 382.8766784667969 2 383.169044 764.323536 NaN NaN NaN NaN NaN NaN NaN 90.696 1 86.836 86.336 87.336 -3.8595 0 0 0 0.23538 1 17746 17746 0.62683 0 1 43107 9248 28661 28680 42493 42493 -0.06805306804881184 SQALERCSFY 10 Unmodified _SQALERCSFY_ 0 0 0 REV__NLRP1|p.K583Rfs*14|2|0.29|ENSG00000091592|chr17:5558948-5558948|T/-|frameshift_variant REV__NLRP1|p.K583Rfs*14|2|0.29|ENSG00000091592|chr17:5558948-5558948|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2788696289062 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 34.085 1 34.085 33.585 34.585 0 0 0 0 0.22552 1 6231 6231 18.146 5.9057 1 + 43108 14575 28662 28681 42494 42494 -0.054160101307388686 SQALERCSFY 10 Unmodified _SQALERCSFY_ 0 0 0 REV__NLRP1|p.K583Rfs*14|2|0.29|ENSG00000091592|chr17:5558948-5558948|T/-|frameshift_variant REV__NLRP1|p.K583Rfs*14|2|0.29|ENSG00000091592|chr17:5558948-5558948|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2903442382812 2 602.27678 1202.53901 NaN NaN NaN NaN NaN NaN NaN 36.047 1 33.77 33.27 34.27 -2.2766 0 0 0 0.22323 1 6352 6352 24.021 0 1 + 43109 14575 28662 28681 42495 42495 -0.054160101307388686 SQDARKQPVCE 11 Unmodified _SQDARKQPVCE_ 0 0 0 REV__ENST00000456660.1_1_7:53929927-53930191:+|nuORF REV__ENST00000456660.1_1_7:53929927-53930191:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.77978515625 2 630.803694 1259.59283 NaN NaN NaN NaN NaN NaN NaN 90.573 1 86.795 86.295 87.295 -3.7779 0 0 0 0.1931 1 17334 17334 20.415 3.3016 1 + 43110 21854 28663 28682 42496 42496 -0.026578376990073593 SQDCSRDF 8 Unmodified _SQDCSRDF_ 0 0 0 CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN;CUBN|p.N1904Tfs*7|1|0.22|ENSG00000107611|chr10:16938985-16938985|T/-|frameshift_variant;CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7327880859375 2 479.190174 956.365795 NaN NaN NaN NaN NaN NaN NaN 87.82 1 83.824 83.324 84.324 -3.9953 0 0 0 0.23107 1 16725 16725 0.063987 0.055711 1 43111 754 28664 28683 42497 42497 -0.1141337618715852 SQDDLKKK 8 Unmodified _SQDDLKKK_ 0 0 0 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7688293457031 2 481.269281 960.52401 -0.12662 -6.094E-05 0.030202 1.4535E-05 -0.096421 -4.6404E-05 481.2691950871591 51.61 0.59782 48.559 48.272 48.87 -3.0517 41 16 3 0 0 0 0.7147 1 9477 9477 15.847 0 1 3220500 + 43112 14304 28665 28684 42498 42498 0.042168660635638844 SQDELLSKY 9 Unmodified _SQDELLSKY_ 0 0 0 tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1 tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1 tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2694091796875 2 541.771854 1081.52915 0.28528 0.00015456 -0.65325 -0.00035391 -0.36797 -0.00019935 541.771680987147 19.793 0.44227 19.793 19.658 20.1 0 16 12 2 0 0 0 0.65155 1 3249 3249 21.747 2.4897 1 559210 43113 26056 28666 28685 42499 42499 -0.008348748644721127 SQDELLSKY 9 Unmodified _SQDELLSKY_ 0 0 0 tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1 tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1 tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.771854 1081.52915 0.66681 0.00036126 -0.1175 -6.366E-05 0.54931 0.0002976 541.7717536040484 21.346 0.28108 19.872 19.735 20.016 -1.4742 0.03947 0.00017103 NaN 21.747 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 435740 43114 26056 28666 28685 -0.008348748644721127 SQDFKIKN 8 Unmodified _SQDFKIKN_ 0 0 0 REV__nc|ENSG00000136758|Q96TA2-3|YME1L1 REV__nc|ENSG00000136758|Q96TA2-3|YME1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2652587890625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 26.691 1 24.769 24.269 25.269 -1.9222 0 0 0 0.22847 1 4431 4431 18.373 8.8291 1 + 43115 16347 28667 28686 42500 42500 0.023328834091330464 SQDGVTWEA 9 Unmodified _SQDGVTWEA_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.L1167Sfs*9|1|0.07|ENSG00000077235|chr16:27488566-27488566|G/-|frameshift_variant;GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant;GTF3C1|p.V2028Sfs*25|1|0.14|ENSG00000077235|chr16:27462329-27462329|C/-|frameshift_variant nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.48370361328125 3 331.482173 991.42469 NaN NaN NaN NaN NaN NaN NaN 54.416 1 51.281 50.781 51.781 -3.1352 0 0 0 0.14817 1 10038 10038 0.37959 0.072559 1 43116 1555 28668 28687 42501 42501 -0.0713657662120113 SQDLPSSAFK 10 Unmodified _SQDLPSSAFK_ 0 0 0 REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27587890625 2 540.272021 1078.52949 -0.050773 -2.7431E-05 -0.012189 -6.5855E-06 -0.062962 -3.4017E-05 540.2719604723553 67.844 0.9558 67.844 67.368 68.324 0 71 26 4 0 0 0 0.62483 1 13044 13044 20.415 0 1 18193000 + 43117 20248 28669 28688 42502 42502 -0.006634551446268233 SQDPPADLH 9 Unmodified _SQDPPADLH_ 0 0 0 ENST00000474489.5_1_2:220402379-220402472:+|nuORF;ENST00000347842.7_2_2:220402379-220402749:+|nuORF ENST00000474489.5_1_2:220402379-220402472:+|nuORF ENST00000474489.5_1_2:220402379-220402472:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2662353515625 2 490.227613 978.440674 0.13496 6.6161E-05 -0.30771 -0.00015085 -0.17275 -8.4688E-05 490.2274684173461 50.727 3.2905 47.682 46.266 49.556 -3.0453 144 94 2 0 0 0 0.13708 1 9420 9420 46.021 0 1 4439400 43118 8914 28670 28689 42503 42503 -0.04940870384291429 SQDRDSEGP 9 Unmodified _SQDRDSEGP_ 0 0 0 REV__ENST00000538035.5_3_6:24861250-24865655:-|nuORF REV__ENST00000538035.5_3_6:24861250-24865655:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 331.009765625 3 330.808949 989.405017 -0.404 -0.00013365 -1.3675 -0.00045238 -1.7715 -0.00058603 330.80845025394586 49.945 0.98649 47.064 46.729 47.715 -2.8811 67 27 3 0 0 0 0.88338 1 9547 9547 0.77653 0.37582 1 4955500 + 43119 22836 28671 28690 42504 42504 -0.09010952631933833 SQDRDSEGP 9 Unmodified _SQDRDSEGP_ 0 0 0 REV__ENST00000538035.5_3_6:24861250-24865655:-|nuORF REV__ENST00000538035.5_3_6:24861250-24865655:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 330.808949 989.405017 -0.074019 -2.4486E-05 -1.4973 -0.00049531 -1.5713 -0.00051979 330.808380279811 47.056 0.95014 47.056 46.661 47.612 0 -0.061665 -0.00011086 NaN 0.77653 58 26 3 NaN NaN NaN NaN 0 NaN NaN 0 2398900 + 43120 22836 28671 28690 -0.09010952631933833 SQDRDSEGP 9 Unmodified _SQDRDSEGP_ 0 0 0 REV__ENST00000538035.5_3_6:24861250-24865655:-|nuORF REV__ENST00000538035.5_3_6:24861250-24865655:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 330.808949 989.405017 0.03884 1.2848E-05 -1.7609 -0.00058253 -1.7221 -0.00056968 330.80834081638375 50.2 1.0181 47.202 46.763 47.782 -2.999 0.084258 -0.00037253 NaN 0.77653 65 29 3 NaN NaN NaN NaN 0 NaN NaN 0 3657000 + 43121 22836 28671 28690 -0.09010952631933833 SQDRDSEGP 9 Unmodified _SQDRDSEGP_ 0 0 0 REV__ENST00000538035.5_3_6:24861250-24865655:-|nuORF REV__ENST00000538035.5_3_6:24861250-24865655:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 330.808949 989.405017 -0.75641 -0.00025023 -0.94587 -0.0003129 -1.7023 -0.00056313 330.8085811671017 50.155 1.0535 47.148 46.74 47.793 -3.0068 0.030733 0.00043635 NaN 0.77653 66 30 3 NaN NaN NaN NaN 0 NaN NaN 0 2884800 + 43122 22836 28671 28690 -0.09010952631933833 SQDTREPF 8 Unmodified _SQDTREPF_ 0 0 0 REV__ENST00000309859.8_1_16:23503092-23504756:-|nuORF REV__ENST00000309859.8_1_16:23503092-23504756:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2549743652344 2 490.227613 978.440674 0.50943 0.00024974 -0.54345 -0.00026642 -0.034022 -1.6679E-05 490.2273458093358 47.561 5.9984 47.561 44.849 50.848 0 217 171 2 0 0 0 0.078324 2 8954 8954;8969 67.344 9.8725 1 7435900 + 43123 20472 28672 28691 42505;42506 42505 -0.04940870384291429 SQEEEEEGNE 10 Unmodified _SQEEEEEGNE_ 0 0 0 REV__ENSG00000115760|ENST00000421745|BIRC6 REV__ENSG00000115760|ENST00000421745|BIRC6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2623291015625 2 590.217837 1178.42112 NaN NaN NaN NaN NaN NaN NaN 140.61 1 140.61 140.11 141.11 0 0 0 0 0.22588 1 28000 28000 2.9952 0.26005 1 + 43124 15448 28673 28692 42507 42507 -0.1609533597634254 SQEEEEEGNE 10 Unmodified _SQEEEEEGNE_ 0 0 0 REV__ENSG00000115760|ENST00000421745|BIRC6 REV__ENSG00000115760|ENST00000421745|BIRC6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2529907226562 2 590.217837 1178.42112 0.52545 0.00031013 3.1941 0.0018852 3.7195 0.0021953 590.2176101917497 144.52 0.2097 139.85 139.78 139.99 -4.6694 7 5 2 0 0 0 0.91149 1 28613 28613 8.1555 5.8528 1 2372500 + 43125 15448 28673 28692 42508 42508 -0.1609533597634254 SQEESELDDQ 10 Unmodified _SQEESELDDQ_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;CNTRL|p.N1300Tfs*22|1|0.32|ENSG00000119397|chr9:121150412-121150412|C/-|frameshift_variant;CNTRL|p.K1802Sfs*9|2|0.21|ENSG00000119397|chr9:121162247-121162247|A/-|frameshift_variant;ENST00000431571.5_1_9:123906333-123914781:+|nuORF nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.260498046875 2 590.236029 1178.45751 NaN NaN NaN NaN NaN NaN NaN 140.05 1 140.05 139.55 140.55 0 0 0 0 0.22588 1 27862 27862 11.495 5.2889 1 43126 3073 28674 28693 42509 42509 -0.12458459079653039 SQEESELDDQ 10 Unmodified _SQEESELDDQ_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;CNTRL|p.N1300Tfs*22|1|0.32|ENSG00000119397|chr9:121150412-121150412|C/-|frameshift_variant;CNTRL|p.K1802Sfs*9|2|0.21|ENSG00000119397|chr9:121162247-121162247|A/-|frameshift_variant;ENST00000431571.5_1_9:123906333-123914781:+|nuORF nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2759399414062 2 590.236029 1178.45751 NaN NaN NaN NaN NaN NaN NaN 145.57 1 140.63 140.13 141.13 -4.9445 0 0 0 0.22588 1 28151 28151 10.151 3.4274 1 43127 3073 28674 28693 42510 42510 -0.12458459079653039 SQEEVEKSF 9 Unmodified _SQEEVEKSF_ 0 0 0 REV__EIF4G1|p.R1193Q|1|0.22|ENSG00000114867|chr3:184327365-184327365|G/A|missense_variant REV__EIF4G1|p.R1193Q|1|0.22|ENSG00000114867|chr3:184327365-184327365|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2843017578125 2 541.753661 1081.49277 0.10407 5.6383E-05 2.6252 0.0014222 2.7293 0.0014786 541.7535745630763 53.954 0.10419 50.819 50.731 50.835 -3.1352 4 2 2 0 0 0 0.73268 1 9937 9937 5.2969 1.7004 1 314480 + 43128 13796 28675 28694 42511 42511 -0.044717517611843505 SQEEVEKSF 9 Unmodified _SQEEVEKSF_ 0 0 0 REV__EIF4G1|p.R1193Q|1|0.22|ENSG00000114867|chr3:184327365-184327365|G/A|missense_variant REV__EIF4G1|p.R1193Q|1|0.22|ENSG00000114867|chr3:184327365-184327365|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 541.753661 1081.49277 0.043171 2.3388E-05 5.1098 0.0027683 5.153 0.0027916 542.2574007682757 53.814 0.24503 50.718 50.614 50.859 -3.0954 -0.050239 0.00099155 NaN 5.2969 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 410460 + 43129 13796 28675 28694 -0.044717517611843505 SQEFPFPET 9 Unmodified _SQEFPFPET_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2651977539062 2 541.245472 1080.47639 NaN NaN NaN NaN NaN NaN NaN 47.127 1 44.286 43.786 44.786 -2.8409 0 0 0 0.10963 1 8896 8896 4.7159 0.11217 1 43130 6763 28676 28695 42512 42512 -0.06062832927273121 SQEGEEGSGLS 11 Unmodified _SQEGEEGSGLS_ 0 0 0 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2821044921875 2 540.228007 1078.44146 0.12878 6.9571E-05 0.633 0.00034197 0.76178 0.00041154 540.2283170986744 47.596 0.84206 44.727 44.357 45.199 -2.869 62 23 3 0 0 0 0.45791 1 8947 8947 32.786 11.039 1 19457000 43131 5664 28677 28696 42513 42513 -0.09462120525881801 SQEGEEGSGLS 11 Unmodified _SQEGEEGSGLS_ 0 0 0 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2789306640625 2 540.228007 1078.44146 -0.0082215 -4.4415E-06 0.75355 0.00040709 0.74533 0.00040265 540.2284032901069 47.877 0.82666 44.927 44.469 45.295 -2.9499 61 23 3 0 0 0 0.45791 1 8679 8679 32.786 11.039 1 11193000 43132 5664 28677 28696 42514 42514 -0.09462120525881801 SQEGEEGSGLS 11 Unmodified _SQEGEEGSGLS_ 0 0 0 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.228007 1078.44146 0.11041 5.9649E-05 0.6134 0.00033137 0.72381 0.00039102 540.2283047544311 47.756 0.87644 44.814 44.41 45.287 -2.9421 0.057103 2.448E-05 NaN 32.786 67 24 4 NaN NaN NaN NaN 0 NaN NaN 0 14422000 43133 5664 28677 28696 -0.09462120525881801 SQERVEALY 9 Unmodified _SQERVEALY_ 0 0 0 ENSG00000187105|ENST00000553558|HEATR4 ENSG00000187105|ENST00000553558|HEATR4 ENSG00000187105|ENST00000553558|HEATR4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7748413085938 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 93.428 1 89.437 88.937 89.937 -3.9907 0 0 0 0.19512 1 18300 18300 12.241 0 1 43134 7095 28678 28697 42515 42515 -0.0026405277030789875 SQEVGLLGEPG 11 Unmodified _SQEVGLLGEPG_ 0 0 0 REV__NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant REV__NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7965087890625 2 543.277303 1084.54005 0.18673 0.00010144 -4.4642 -0.0024253 -4.2775 -0.0023238 543.7748792451532 58.9 0.76597 55.695 55.264 56.03 -3.2052 40 21 3 0 0 0 0.44778 1 10970 10970 31.268 7.2478 1 686480 + 43135 16039 28679 28698 42516 42516 0.0011652750984012528 SQEVGLLGEPG 11 Unmodified _SQEVGLLGEPG_ 0 0 0 REV__NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant REV__NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.277303 1084.54005 0.1467 7.9697E-05 -4.6743 -0.0025394 -4.5276 -0.0024597 543.7749161482025 58.631 0.83362 55.72 55.168 56.001 -2.9105 0.01278 -0.00010245 NaN 31.268 46 23 3 NaN NaN NaN NaN 0 NaN NaN 0 1845200 + 43136 16039 28679 28698 0.0011652750984012528 SQEVGLLGEPG 11 Unmodified _SQEVGLLGEPG_ 0 0 0 REV__NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant REV__NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.277303 1084.54005 0.18673 0.00010144 -4.4642 -0.0024253 -4.2775 -0.0023238 543.7748792451532 58.9 0.76597 55.695 55.264 56.03 -3.2052 -0.01278 0.00012581 NaN 31.268 40 21 3 NaN NaN NaN NaN 0 NaN NaN 0 686480 + 43137 16039 28679 28698 0.0011652750984012528 SQFLAVGSYD 10 Unmodified _SQFLAVGSYD_ 0 0 0 ENST00000469643.1_1_1:3549956-3551942:-|nuORF;ENST00000471223.1_1_1:3551627-3552044:-|nuORF;ENST00000497940.5_1_1:3549956-3553597:-|nuORF;ENSG00000116213|ENST00000270708|WRAP73 ENST00000469643.1_1_1:3549956-3551942:-|nuORF ENST00000469643.1_1_1:3549956-3551942:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7699584960938 2 543.758746 1085.50294 0.15468 8.4107E-05 -0.052909 -2.877E-05 0.10177 5.5337E-05 543.7586835859865 96.962 0.78553 92.727 92.338 93.124 -4.2348 54 22 3 0 0 0 0.78938 1 18580 18580 21.537 0 1 8210000 43138 2916 28680 28699 42517 42517 -0.03639144035946629 SQFSFPCDY 9 Unmodified _SQFSFPCDY_ 0 0 0 ENST00000486758.5_1_4:77631429-77663226:+|nuORF ENST00000486758.5_1_4:77631429-77663226:+|nuORF ENST00000486758.5_1_4:77631429-77663226:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7721557617188 2 547.2184 1092.42225 0.133 7.278E-05 0.39785 0.00021771 0.53085 0.00029049 547.2185574455691 36.892 0.81973 34.544 34.208 35.028 -2.3479 46 23 3 0 0 0 0.48644 1 6486 6486 20.454 1.1966 1 1857400 43139 10459 28681 28700 42518 42518 -0.12026748350513117 SQGCLHCAF 9 Unmodified _SQGCLHCAF_ 0 0 0 REV__nc|ENSG00000214022|Q9BWE0|REPIN1 REV__nc|ENSG00000214022|Q9BWE0|REPIN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 483.13470458984375 2 483.20203 964.389507 NaN NaN NaN NaN NaN NaN NaN 94.504 1 90.513 90.013 91.013 -3.9907 0 0 0 0.23508 1 18519 18519 6.7232 0.96273 1 + 43140 19657 28682 28701 42519 42519 -0.09411233954347153 SQGISPIVY 9 Unmodified _SQGISPIVY_ 0 0 0 ENST00000457422.6_1_17:42755944-42756196:-|nuORF ENST00000457422.6_1_17:42755944-42756196:-|nuORF ENST00000457422.6_1_17:42755944-42756196:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7653503417969 2 482.260925 962.507297 -0.28928 -0.00013951 0.47918 0.00023109 0.18989 9.1579E-05 482.2611003700825 61.317 0.68569 61.317 60.946 61.631 0 43 19 3 0 0 0 0.45788 1 11764 11764 32.786 0 1 4262800 43141 10039 28683 28702 42520 42520 0.02454365177618456 SQGQPVPT 8 Unmodified _SQGQPVPT_ 0 0 0 nc|ENSG00000082014|Q6STE5-2|SMARCD3;ENSG00000082014|ENST00000262188|SMARCD3 nc|ENSG00000082014|Q6STE5-2|SMARCD3 nc|ENSG00000082014|Q6STE5-2|SMARCD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3637084960938 1 813.410108 812.402832 0.60799 0.00049454 -0.12737 -0.0001036 0.48061 0.00039094 813.4099153950148 32.902 0.76171 30.686 30.316 31.078 -2.2158 51 21 3 0 0 0 8448 1 5690 5690 4.2837 0.69098 1 5023000 43142 1632 28684 28703 42521 42521 -0.01087336579098519 SQGVGVQSVVC 11 Unmodified _SQGVGVQSVVC_ 0 0 0 REV__ENSG00000070729|ENST00000251102|CNGB1 REV__ENSG00000070729|ENST00000251102|CNGB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2799072265625 2 531.766049 1061.51754 0.39045 0.00020763 -0.56195 -0.00029883 -0.1715 -9.1196E-05 531.7658985911612 55.808 0.97763 52.618 52.113 53.09 -3.1895 85 27 4 0 0 0 0.67257 1 10238 10238 13.615 0.5724 1 40427000 + 43143 14263 28685 28704 42522 42522 -0.010753951594551836 SQHARRPE 8 Unmodified _SQHARRPE_ 0 0 0 NOS1|p.M688Cfs*52|1|0.39|ENSG00000089250|chr12:117265391-117265391|G/-|frameshift_variant;NOS1|p.G676Afs*64|2|0.23|ENSG00000089250|chr12:117265425-117265425|C/-|frameshift_variant;NOS1|p.L911Qfs*6|1|0.04|ENSG00000089250|chr12:117247436-117247439|CCCA/-|frameshift_variant;nc|ENSG00000089250|P29475-3|NOS1;nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1 NOS1|p.M688Cfs*52|1|0.39|ENSG00000089250|chr12:117265391-117265391|G/-|frameshift_variant NOS1|p.M688Cfs*52|1|0.39|ENSG00000089250|chr12:117265391-117265391|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2642517089844 2 490.754664 979.494775 0.54197 0.00026597 -0.37623 -0.00018464 0.16573 8.1335E-05 490.7549313707066 47.511 0.56353 47.511 47.295 47.858 0 22 15 2 0 0 0 0.93477 1 8969 8969 24.674 24.674 1 973260 43144 1758 28686 28705 42523 42523 0.004207665579428976 SQIEADFRL 9 Unmodified _SQIEADFRL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1;TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant;TOP1|p.C453Mfs*40|1|0.27|ENSG00000198900|chr20:41112823-41112824|-/A|frameshift_variant;TOP1|p.T639Lfs*6|1|0.45|ENSG00000198900|chr20:41118257-41118257|A/-|frameshift_variant ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.284912109375 2 539.780013 1077.54547 0.26622 0.0001437 0.16985 9.1679E-05 0.43607 0.00023538 539.780056362511 125.51 1.0613 125.51 124.94 126 0 74 29 4 0 0 0 0.60333 1 24722 24722 17.443 8.0595 1 33372000 43145 7518 28687 28706 42524 42524 0.009802510922781948 SQIEADFRL 9 Unmodified _SQIEADFRL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1;TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant;TOP1|p.C453Mfs*40|1|0.27|ENSG00000198900|chr20:41112823-41112824|-/A|frameshift_variant;TOP1|p.T639Lfs*6|1|0.45|ENSG00000198900|chr20:41118257-41118257|A/-|frameshift_variant ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2845458984375 2 539.780013 1077.54547 0.19908 0.00010746 -0.12443 -6.7164E-05 0.074657 4.0298E-05 539.7799051165958 129.86 1.3308 125.23 124.43 125.76 -4.6359 107 37 5 0 0 0 0.39629 2 25567 25567;25612 33.445 7.1768 1 45054000 43146 7518 28687 28706 42525;42526 42525 0.009802510922781948 SQIEADFRL 9 Unmodified _SQIEADFRL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1;TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant;TOP1|p.C453Mfs*40|1|0.27|ENSG00000198900|chr20:41112823-41112824|-/A|frameshift_variant;TOP1|p.T639Lfs*6|1|0.45|ENSG00000198900|chr20:41118257-41118257|A/-|frameshift_variant ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2843017578125 2 539.780013 1077.54547 0.16173 8.7298E-05 -0.0062769 -3.3881E-06 0.15545 8.391E-05 539.7799560493539 130.02 1.2904 125.18 124.52 125.81 -4.8355 99 36 4 0 0 0 0.44869 2 24979 24979;25004 29.841 4.8496 1 38110000 43147 7518 28687 28706 42527;42528 42527 0.009802510922781948 SQIEADFRL 9 Unmodified _SQIEADFRL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1;TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant;TOP1|p.C453Mfs*40|1|0.27|ENSG00000198900|chr20:41112823-41112824|-/A|frameshift_variant;TOP1|p.T639Lfs*6|1|0.45|ENSG00000198900|chr20:41118257-41118257|A/-|frameshift_variant ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2844848632812 2 539.780013 1077.54547 0.24902 0.00013442 -0.1672 -9.0249E-05 0.081825 4.4168E-05 539.7798781885076 130.02 1.3414 125.25 124.4 125.74 -4.7725 95 37 4 0 0 0 0.37855 2 25008 24991;25008 34.932 34.932 1 27069000 43148 7518 28687 28706 42529;42530 42530 0.009802510922781948 SQIEPWVG 8 Unmodified _SQIEPWVG_ 0 0 0 ENST00000562622.5_1_16:58149118-58163019:-|nuORF ENST00000562622.5_1_16:58149118-58163019:-|nuORF ENST00000562622.5_1_16:58149118-58163019:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2326354980469 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 7.5035 1 6.4588 5.9588 6.9588 -1.0446 0 0 0 0.2396 1 644 644 0.12286 0 1 43149 11320 28688 28707 42531 42531 -0.010864770279567892 SQISISVEEWE 11 Unmodified _SQISISVEEWE_ 0 0 0 nc|ENSG00000162687|Q6UVM3-4|KCNT2;ENST00000610076.1_1_1:196227273-196577439:-|nuORF;nc|ENSG00000162687|Q6UVM3-3|KCNT2;nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2;ENST00000451324.6_1_1:196197356-196228734:-|nuORF;ENST00000498426.5_1_1:196197356-196286329:-|nuORF nc|ENSG00000162687|Q6UVM3-4|KCNT2 nc|ENSG00000162687|Q6UVM3-4|KCNT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21539306640625 3 436.21023 1305.60886 0.18418 8.0339E-05 0.61535 0.00026842 0.79953 0.00034876 436.21045052718716 72.946 2.0171 69.407 68.295 70.312 -3.5385 118 57 4 0 0 0 0.74408 1 13878 13878 8.7518 1.3227 1 31977000 43150 5353 28689 28708 42532 42532 -0.03171852981131451 SQIVIQQEH 9 Unmodified _SQIVIQQEH_ 0 0 0 REV__ENST00000432228.1_1_2:222827655-222828180:+|nuORF REV__ENST00000432228.1_1_2:222827655-222828180:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2840576171875 2 541.285463 1080.55637 -0.010674 -5.7779E-06 -0.56364 -0.00030509 -0.57431 -0.00031087 541.2852404459895 62.723 0.4214 62.723 62.381 62.803 0 16 11 2 0 0 0 0.5059 1 12000 12000 19.257 3.4098 1 1748100 + 43151 21632 28690 28709 42533 42533 0.019316534665676954 SQIWTNTCL 9 Unmodified _SQIWTNTCL_ 0 0 0 REV__ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant REV__ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.273193359375 2 533.255317 1064.49608 0.32429 0.00017293 0.34914 0.00018618 0.67344 0.00035911 533.2555533395137 49.752 0.3455 49.752 49.547 49.893 0 15 9 2 0 0 0 0.71527 1 9390 9390 9.3831 0 1 549270 + 43152 14623 28691 28710 42534 42534 -0.03358780188182209 SQKAKCESV 9 Unmodified _SQKAKCESV_ 0 0 0 REV__ENSG00000225950|ENST00000593537|NTF4 REV__ENSG00000225950|ENST00000593537|NTF4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25738525390625 2 490.247492 978.48043 0.16955 8.3121E-05 -1.0781 -0.00052854 -0.90855 -0.00044542 490.2469923261547 63.387 0.63887 60.389 59.951 60.59 -2.9975 29 18 2 0 0 0 0.73481 1 12196 12196 14.405 0.49933 1 2332500 + 43153 19726 28692 28711 42535 42535 -0.00967066705209163 SQKKKKKS 8 Unmodified _SQKKKKKS_ 0 0 0 ENSG00000100281|ENST00000216106|HMGXB4;ENST00000418170.5_1_22:35660034-35689641:+|nuORF;HMGXB4|p.K222Nfs*16|1|0.23|ENSG00000100281|chr22:35265049-35265049|A/-|frameshift_variant ENSG00000100281|ENST00000216106|HMGXB4 ENSG00000100281|ENST00000216106|HMGXB4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.249267578125 2 481.311284 960.608014 NaN NaN NaN NaN NaN NaN NaN 55.746 1 52.556 52.056 53.056 -3.1895 0 0 0 0.2396 1 10312 10312 0 0 1 43154 1945 28693 28712 42536 42536 0.12613441951134519 SQKPKFNFR 9 Unmodified _SQKPKFNFR_ 0 0 0 nc|ENSG00000141485|Q86YT5-2|SLC13A5;nc|ENSG00000141485|Q86YT5-4|SLC13A5;nc|ENSG00000141485|Q86YT5-3|SLC13A5;ENSG00000141485|ENST00000433363|SLC13A5 nc|ENSG00000141485|Q86YT5-2|SLC13A5 nc|ENSG00000141485|Q86YT5-2|SLC13A5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3167724609375 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 116.33 1 116.33 115.83 116.83 0 0 0 0 0.23508 1 22906 22906 10.824 0.024421 1 43155 4372 28694 28713 42537 42537 0.055439428370846144 SQKWKIFQ 8 Unmodified _SQKWKIFQ_ 0 0 0 REV__ENSG00000164291|ENST00000380009|ARSK REV__ENSG00000164291|ENST00000380009|ARSK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2669067382812 2 532.798009 1063.58147 0.098277 5.2362E-05 0.38447 0.00020484 0.48274 0.0002572 532.7981721605126 160.45 0.60486 160.45 160.17 160.78 0 27 16 2 0 0 0 0.53558 1 32192 32192 26.268 0.24744 1 3636200 + 43156 17668 28695 28714 42538 42538 0.052217530597772566 SQLAGSLSAAG 11 Unmodified _SQLAGSLSAAG_ 0 0 0 ENST00000441284.5_2_13:46917522-46942212:-|nuORF;nc|ENSG00000102445|Q9H714-6|RUBCNL;nc|ENSG00000102445|Q9H714-3|RUBCNL;nc|ENSG00000102445|Q9H714-4|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL ENST00000441284.5_2_13:46917522-46942212:-|nuORF ENST00000441284.5_2_13:46917522-46942212:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2477722167969 2 481.251089 960.487624 0.08258 3.9742E-05 -0.81517 -0.0003923 -0.73259 -0.00035256 481.2505084892255 37.909 2.4506 37.909 36.887 39.338 0 134 69 4 0 0 0 0.25463 1 6863 6863 6.6924 5.6273 1 99259000 43157 2131 28696 28715 42539 42539 0.005799891668402779 SQLEHRPSQ 9 Unmodified _SQLEHRPSQ_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.273681640625 2 541.272887 1080.53122 0.12046 6.5199E-05 2.8562 0.001546 2.9766 0.0016112 541.2740162816084 129.91 0.38815 125.08 124.8 125.19 -4.8355 17 10 2 0 0 0 0.42844 1 24949 24949 24.021 2.2739 1 1054900 43158 6931 28697 28716 42540 42540 -0.005824013360097524 SQLEHRPSQ 9 Unmodified _SQLEHRPSQ_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2689208984375 2 541.272887 1080.53122 NaN NaN NaN NaN NaN NaN NaN 130.06 1 125.29 124.79 125.79 -4.7725 0 0 0 0.22519 1 25025 25025 16.149 5.3252 1 43159 6931 28697 28716 42541 42541 -0.005824013360097524 SQLLLPAFQY 10 Unmodified _SQLLLPAFQY_ 0 0 0 REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2 REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2767333984375 2 590.324057 1178.63356 NaN NaN NaN NaN NaN NaN NaN 145.81 1 141.13 140.63 141.63 -4.6868 0 0 0 0.22588 1 28908 28908 5.7319 0.43497 1 + 43160 15519 28698 28717 42542 42542 0.05138871682879653 SQLTSNLAQ 9 Unmodified _SQLTSNLAQ_ 0 0 0 ZBTB2|p.N188Y|1|0.22|ENSG00000181472|chr6:151366504-151366504|T/A|missense_variant;ZBTB2|p.F476Lfs*3|1|0.24|ENSG00000181472|chr6:151365638-151365638|A/-|frameshift_variant;ENSG00000181472|ENST00000325144|ZBTB2 ZBTB2|p.N188Y|1|0.22|ENSG00000181472|chr6:151366504-151366504|T/A|missense_variant ZBTB2|p.N188Y|1|0.22|ENSG00000181472|chr6:151366504-151366504|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.249755859375 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 94.54 1 90.549 90.049 91.049 -3.9907 0 0 0 0.1756 1 18526 18526 4.7159 0 1 43161 6725 28699 28718 42543 42543 0.005799891668402779 SQPHHQQW 8 Unmodified _SQPHHQQW_ 0 0 0 REV__nc|ENSG00000139697|A3KN83-3|SBNO1 REV__nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6773071289062 2 524.24139 1046.46823 0.35879 0.00018809 -3.3603 -0.0017616 -3.0015 -0.0015735 524.2391801925038 50.361 0.54172 50.361 50.2 50.741 0 19 15 2 0 0 0 0.86749 1 9566 9566 21.747 10.252 1 1052000 + 43162 16537 28700 28719 42544 42544 -0.05314922333400318 SQPLLIGIILI 11 Unmodified _SQPLLIGIILI_ 0 0 0 REV__ENSG00000122884|ENST00000394890|P4HA1 REV__ENSG00000122884|ENST00000394890|P4HA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.257080078125 2 590.389199 1178.76385 NaN NaN NaN NaN NaN NaN NaN 145.88 1 140.88 140.38 141.38 -5 0 0 0 0.23698 1 28219 28219 2.4985 0 1 + 43163 15707 28701 28720 42545 42545 0.1816146768192084 SQQEIQHIV 9 Unmodified _SQQEIQHIV_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2620239257812 2 541.285463 1080.55637 -0.010674 -5.7779E-06 -0.56364 -0.00030509 -0.57431 -0.00031087 541.2852404459895 62.723 0.4214 62.723 62.381 62.803 0 16 11 2 0 0 0 0.10083 2 12028 12012;12028 55.503 30.512 1 1748100 43164 3342 28702 28721 42546;42547 42547 0.01931653466544958 SQQEIQHIV 9 Unmodified _SQQEIQHIV_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.284912109375 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 65.394 1 62.347 61.847 62.847 -3.047 0 0 0 0.070848 1 12657 12657 43.772 21.036 1 43165 3342 28702 28721 42548 42548 0.01931653466544958 SQQEIQHIV 9 Unmodified _SQQEIQHIV_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2849731445312 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 65.637 1 62.59 62.09 63.09 -3.047 0 0 0 3.6106E-08 1 12706 12706 103.35 57.654 1 43166 3342 28702 28721 42549 42549 0.01931653466544958 SQQEIQHIV 9 Unmodified _SQQEIQHIV_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2838134765625 2 541.285463 1080.55637 0.31659 0.00017136 -0.15633 -8.462E-05 0.16026 8.6745E-05 541.2853762873034 66.046 0.45098 62.588 62.419 62.87 -3.4581 23 12 3 0 0 0 0.19171 1 12399 12399 38.176 17.761 1 1762800 43167 3342 28702 28721 42550 42550 0.01931653466544958 SQQEIQHIV 9 Unmodified _SQQEIQHIV_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2647705078125 2 541.285463 1080.55637 0.3922 0.00021229 -0.18602 -0.00010069 0.20618 0.0001116 541.2852892120643 65.838 0.56025 62.555 62.23 62.791 -3.2832 22 15 2 0 0 0 0.19359 1 12403 12403 56.177 46.103 1 1287200 43168 3342 28702 28721 42551 42551 0.01931653466544958 SQQHYSTL 8 Unmodified _SQQHYSTL_ 0 0 0 ENSG00000178033|ENST00000368599|CALHM5 ENSG00000178033|ENST00000368599|CALHM5 ENSG00000178033|ENST00000368599|CALHM5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7687683105469 2 482.230156 962.445759 0.37461 0.00018065 -0.83728 -0.00040376 -0.46267 -0.00022312 482.22978876068174 46.934 0.59824 46.934 46.764 47.362 0 24 16 2 0 0 0 0.95515 1 8902 8902 10.824 5.0921 1 1030900 43169 6552 28703 28722 42552 42552 -0.03696566521659861 SQQKFTIQ 8 Unmodified _SQQKFTIQ_ 0 0 0 ENST00000473824.1_1_10:60124507-60124564:+|nuORF;UBE2D1|p.P57Rfs*22|1|0.39|ENSG00000072401|chr10:58363653-58363653|T/-|frameshift_variant ENST00000473824.1_1_10:60124507-60124564:+|nuORF ENST00000473824.1_1_10:60124507-60124564:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2646484375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 47.999 1 47.999 47.499 48.499 0 0 0 0 0.22757 1 9056 9056 0.68139 0 1 43170 10245 28704 28723 42553 42553 0.023328834091330464 SQQKFTIQ 8 Unmodified _SQQKFTIQ_ 0 0 0 ENST00000473824.1_1_10:60124507-60124564:+|nuORF;UBE2D1|p.P57Rfs*22|1|0.39|ENSG00000072401|chr10:58363653-58363653|T/-|frameshift_variant ENST00000473824.1_1_10:60124507-60124564:+|nuORF ENST00000473824.1_1_10:60124507-60124564:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2649230957031 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 50.981 1 48.098 47.598 48.598 -2.8824 0 0 0 0.22757 1 9681 9681 0.25148 0.18749 1 43171 10245 28704 28723 42554 42554 0.023328834091330464 SQQLRMKG 8 Unmodified _SQQLRMKG_ 0 0 0 ENSG00000169962|ENST00000339381|TAS1R3;TAS1R3|p.L606Wfs*43|1|0.42|ENSG00000169962|chr1:1333711-1333711|G/-|frameshift_variant;TAS1R3|p.H387Sfs*13|1|0.24|ENSG00000169962|chr1:1332688-1332689|-/T|frameshift_variant ENSG00000169962|ENST00000339381|TAS1R3 ENSG00000169962|ENST00000339381|TAS1R3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 474.26092529296875 2 474.258194 946.501834 NaN NaN NaN NaN NaN NaN NaN 151.48 1 146.25 145.75 146.75 -5.2365 0 0 0 0.22647 1 29361 29361 1.7423 1.0609 1 43172 6025 28705 28724 42555 42555 0.026443631141660262 SQQPYPPC 8 Unmodified _SQQPYPPC_ 0 0 0 REV__nc|ENSG00000175832|P43268-2|ETV4 REV__nc|ENSG00000175832|P43268-2|ETV4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23101806640625 2 460.202553 918.390553 NaN NaN NaN NaN NaN NaN NaN 16.784 1 15.512 15.012 16.012 -1.2722 0 0 0 0.2396 1 2434 2434 0.30703 0 1 + 43173 18487 28706 28725 42556 42556 -0.07190696313796252 SQQQIETRY 9 Unmodified _SQQQIETRY_ 0 0 0 REV__ENST00000528744.5_1_11:126137442-126138699:-|nuORF REV__ENST00000528744.5_1_11:126137442-126138699:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3203735351562 2 576.785827 1151.5571 NaN NaN NaN NaN NaN NaN NaN 54.611 1 51.473 50.973 51.973 -3.1377 0 0 0 0.23508 1 10112 10112 7.2892 2.0586 1 + 43174 18810 28707 28726 42557 42557 -0.012615518843858808 SQQTQLLAA 9 Unmodified _SQQTQLLAA_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2550964355469 2 480.261456 958.50836 0.094419 4.5346E-05 -0.055697 -2.6749E-05 0.038721 1.8596E-05 480.2614100577544 62.43 0.87563 59.469 58.899 59.775 -2.9614 53 24 3 0 0 0 0.5685 1 11994 11994 15.248 0.41021 1 3923100 43175 3070 28708 28727 42558 42558 0.027445795465155243 SQQTQLLAA 9 Unmodified _SQQTQLLAA_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.261456 958.50836 0.16248 7.8035E-05 -0.17467 -8.3887E-05 -0.012185 -5.8521E-06 480.26138091384263 62.821 1.0247 59.406 58.769 59.794 -3.4158 -0.11775 -0.00014379 NaN 15.248 42 28 2 NaN NaN NaN NaN 0 NaN NaN 0 3963200 43176 3070 28708 28727 0.027445795465155243 SQQTQLLAA 9 Unmodified _SQQTQLLAA_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.261456 958.50836 0.1873 8.9955E-05 -0.067008 -3.2181E-05 0.1203 5.7774E-05 480.2613839567713 62.685 1.0041 59.446 58.893 59.898 -3.2395 -0.07774 -4.038E-05 NaN 15.248 48 28 2 NaN NaN NaN NaN 0 NaN NaN 0 3583500 43177 3070 28708 28727 0.027445795465155243 SQQTWIQA 8 Unmodified _SQQTWIQA_ 0 0 0 REV__ENST00000587238.5_1_19:19752858-19754364:-|nuORF REV__ENST00000587238.5_1_19:19752858-19754364:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2410583496094 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 94.762 1 90.571 90.071 91.071 -4.1911 0 0 0 0.22594 1 18084 18084 1.7423 0 1 + 43178 23271 28709 28728 42559 42559 -0.015319761420187206 SQRLELYA 8 Unmodified _SQRLELYA_ 0 0 0 ENSG00000103356|ENST00000449606|EARS2;nc|ENSG00000103356|Q5JPH6-2|EARS2;ENST00000564461.5_1_16:23555833-23563620:-|nuORF ENSG00000103356|ENST00000449606|EARS2 ENSG00000103356|ENST00000449606|EARS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2652893066406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 49.998 1 49.998 49.498 50.498 0 0 0 0 0.21486 1 9459 9459 8.5933 1.8701 1 43179 2185 28710 28729 42560 42560 0.023328834091330464 SQRYQAEI 8 Unmodified _SQRYQAEI_ 0 0 0 ENST00000468058.1_1_19:7975099-7977313:+|nuORF;nc|ENSG00000076984|O14733-2|MAP2K7 ENST00000468058.1_1_19:7975099-7977313:+|nuORF ENST00000468058.1_1_19:7975099-7977313:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.005615234375 3 332.169929 993.487959 NaN NaN NaN NaN NaN NaN NaN 74.119 1 70.754 70.254 71.254 -3.3643 0 0 0 0.21486 1 14458 14458 6.7232 0 1 43180 10161 28711 28730 42561 42561 -0.00904591113294373 SQRYQAEI 8 Unmodified _SQRYQAEI_ 0 0 0 ENST00000468058.1_1_19:7975099-7977313:+|nuORF;nc|ENSG00000076984|O14733-2|MAP2K7 ENST00000468058.1_1_19:7975099-7977313:+|nuORF ENST00000468058.1_1_19:7975099-7977313:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.0057067871094 3 332.169929 993.487959 NaN NaN NaN NaN NaN NaN NaN 78.607 1 75.143 74.643 75.643 -3.4633 0 0 0 0.21486 1 15349 15349 3.5965 0 1 43181 10161 28711 28730 42562 42562 -0.00904591113294373 SQSDISKIT 9 Unmodified _SQSDISKIT_ 0 0 0 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2602844238281 2 489.758746 977.50294 0.37036 0.00018139 -1.0852 -0.00053151 -0.71488 -0.00035012 489.7579600134409 100.15 0.84235 95.857 95.417 96.26 -4.297 51 24 3 0 0 0 0.44932 1 19150 19150 22.736 2.3217 1 3636000 + 43182 646 28712 28731 42563 42563 0.013288559640386666 SQSDISKIT 9 Unmodified _SQSDISKIT_ 0 0 0 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.758746 977.50294 0.089635 4.39E-05 -0.31235 -0.00015298 -0.22271 -0.00010908 489.7584166444476 95.9 0.72643 95.9 95.558 96.285 0 0.010749 0.00042072 NaN 22.736 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 3730100 + 43183 646 28712 28731 0.013288559640386666 SQSHFSTVS 9 Unmodified _SQSHFSTVS_ 0 0 0 REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.265625 2 490.227613 978.440674 0.50943 0.00024974 -0.54345 -0.00026642 -0.034022 -1.6679E-05 490.2273458093358 47.561 5.9984 47.561 44.849 50.848 0 217 171 2 0 0 0 0.39168 2 9612 9570;9612 0.40827 0 1 7435900 + 43184 17748 28713 28732 42564;42565 42565 -0.049408703842800605 SQSPVTTWVS 10 Unmodified _SQSPVTTWVS_ 0 0 0 REV__ENST00000216259.7_1_22:41973000-41973228:-|nuORF REV__ENST00000216259.7_1_22:41973000-41973228:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7754516601562 2 546.272021 1090.52949 -0.30912 -0.00016886 0.36919 0.00020168 0.060068 3.2813E-05 546.2721874417598 23.688 2.7126 21.899 20.851 23.564 -1.7886 234 78 5 0 0 0 0.51405 1 3694 3694 3.8763 0 1 74350000 + 43185 20012 28714 28733 42566 42566 -0.01215455144642874 SQTRQLFV 8 Unmodified _SQTRQLFV_ 0 0 0 MED14|p.R91Q|1|0.29|ENSG00000180182|chrX:40726822-40726822|C/T|missense_variant MED14|p.R91Q|1|0.29|ENSG00000180182|chrX:40726822-40726822|C/T|missense_variant MED14|p.R91Q|1|0.29|ENSG00000180182|chrX:40726822-40726822|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2744140625 2 489.771991 977.529429 0.32789 0.00016059 0.20377 9.9803E-05 0.53167 0.00026039 489.77214228308696 39.77 0.4523 39.77 39.372 39.824 0 17 12 2 0 0 0 0.71273 1 7312 7312 12.532 0 1 641450 43186 12122 28715 28734 42567 42567 0.03976589646049433 SQVESGLTV 9 Unmodified _SQVESGLTV_ 0 0 0 ENST00000598360.5_1_19:4722635-4722716:-|nuORF ENST00000598360.5_1_19:4722635-4722716:-|nuORF ENST00000598360.5_1_19:4722635-4722716:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2392883300781 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 48.374 1 48.374 47.874 48.874 0 0 0 0 0.19657 1 9135 9135 4.897 0 1 43187 11684 28716 28735 42568 42568 0.0033318441827532297 SQVSKLDPG 9 Unmodified _SQVSKLDPG_ 0 0 0 REV__nc|ENSG00000164078|Q04912-3|MST1R REV__nc|ENSG00000164078|Q04912-3|MST1R MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2512512207031 2 465.748182 929.481811 -0.1419 -6.6087E-05 0.21308 9.9241E-05 0.071182 3.3153E-05 465.7481978127233 69.249 0.53339 66.069 65.798 66.331 -3.1796 34 14 3 0 0 0 0.69192 1 13447 13447 10.074 6.4774 1 6183500 + 43188 17645 28717 28736 42569 42569 0.014248906551983964 SQVYDGHLY 9 Unmodified _SQVYDGHLY_ 0 0 0 REV__ENSG00000175294|ENST00000312106|CATSPER1 REV__ENSG00000175294|ENST00000312106|CATSPER1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.27197265625 2 541.251089 1080.48762 NaN NaN NaN NaN NaN NaN NaN 49.103 1 46.104 45.604 46.604 -2.999 0 0 0 0.22962 1 8973 8973 14.838 0.43289 1 + 43189 18469 28718 28737 42570 42570 -0.049400108331155934 SQWAGEPTPD 10 Unmodified _SQWAGEPTPD_ 0 0 0 REV__ENST00000481536.2_1_3:128749483-128758688:+|nuORF REV__ENST00000481536.2_1_3:128749483-128758688:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7794799804688 2 544.238178 1086.4618 0.33704 0.00018343 -0.19638 -0.00010688 0.14065 7.6549E-05 544.2380429373482 63.386 0.3779 60.129 59.952 60.329 -3.2567 15 10 3 0 0 0 0.85084 1 11918 11918 6.6304 0 1 864130 + 43190 15382 28719 28738 42571 42571 -0.07796905075429095 SQWETDFPSRY 11 Unmodified _SQWETDFPSRY_ 0 0 0 REV__nc|ENSG00000292363|Q9HC73-3|CRLF2 REV__nc|ENSG00000292363|Q9HC73-3|CRLF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 708.313720703125 2 708.314948 1414.61534 NaN NaN NaN NaN NaN NaN NaN 36.567 1 36.567 36.067 37.067 0 0 0 0 0.2367 1 6744 6744 2.9952 0 1 + 43191 19601 28720 28739 42572 42572 -0.07537915029774922 SQYHPNLA 8 Unmodified _SQYHPNLA_ 0 0 0 ENST00000528624.5_1_1:26149786-26150235:+|nuORF ENST00000528624.5_1_1:26149786-26150235:+|nuORF ENST00000528624.5_1_1:26149786-26150235:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2391357421875 2 465.227417 928.44028 NaN NaN NaN NaN NaN NaN NaN 51.202 1 51.202 50.702 51.702 0 0 0 0 0.21452 1 9707 9707 13.508 0 1 43192 10938 28721 28740 42573 42573 -0.02680245313490559 SRAFGTCSK 9 Unmodified _SRAFGTCSK_ 0 0 0 ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35 ENSG00000118965|ENST00000281405|WDR35 ENSG00000118965|ENST00000281405|WDR35 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73291015625 2 478.734551 955.45455 NaN NaN NaN NaN NaN NaN NaN 95.994 1 91.803 91.303 92.303 -4.1911 0 0 0 0.19687 1 18326 18326 8.1555 7.904 1 43193 3056 28722 28741 42574 42574 -0.024959161568290256 SRAHKTVPQQ 10 Unmodified _SRAHKTVPQQ_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.32177734375 2 576.317628 1150.6207 NaN NaN NaN NaN NaN NaN NaN 142.93 1 142.93 142.43 143.43 0 0 0 0 0.22588 1 28510 28510 11.495 2.7493 1 43194 5449 28723 28742 42575 42575 0.05141853343366165 SRAKRLVL 8 Unmodified _SRAKRLVL_ 0 0 0 REV__ENSG00000167291|ENST00000310924|TBC1D16 REV__ENSG00000167291|ENST00000310924|TBC1D16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.8775329589844 3 314.878421 941.613434 NaN NaN NaN NaN NaN NaN NaN 9.4662 1 8.672 8.172 9.172 -0.79424 0 0 0 0.21486 1 1095 1095 0.35063 0 1 + 43195 17915 28724 28743 42576 42576 0.14029165533600008 SRAPVFLQF 9 Unmodified _SRAPVFLQF_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2769165039062 2 532.798009 1063.58147 0.098277 5.2362E-05 0.38447 0.00020484 0.48274 0.0002572 532.7981721605126 160.45 0.60486 160.45 160.17 160.78 0 27 16 2 0 0 0 0.17734 3 32214 32177;32212;32214 40.239 27.445 1 3636200 43196 6763 28725 28744 42577;42578;42579 42579 0.052217530597772566 SRAPVFLQF 9 Unmodified _SRAPVFLQF_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.798009 1063.58147 0.098277 5.2362E-05 0.38447 0.00020484 0.48274 0.0002572 532.7981721605126 160.45 0.60486 160.45 160.17 160.78 0 0 0 NaN 40.239 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3636200 43197 6763 28725 28744 0.052217530597772566 SRAQQQGAVV 10 Unmodified _SRAQQQGAVV_ 0 0 0 REV__ENST00000567644.5_1_15:74208706-74212300:-|nuORF REV__ENST00000567644.5_1_15:74208706-74212300:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279296875 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 16.986 1 16.986 16.486 17.486 0 0 0 0 0.21103 1 2668 2668 26.268 11.43 1 + 43198 23131 28726 28745 42580 42580 0.032381890436681715 SRAQQQGAVV 10 Unmodified _SRAQQQGAVV_ 0 0 0 REV__ENST00000567644.5_1_15:74208706-74212300:-|nuORF REV__ENST00000567644.5_1_15:74208706-74212300:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2667236328125 2 522.283254 1042.55196 -0.2896 -0.00015125 0.18927 9.8851E-05 -0.10033 -5.2401E-05 522.282949887815 18.315 0.30923 17.004 16.868 17.177 -1.3109 11 8 2 0 0 0 0.4708 2 2954 2954;2978 26.268 11.43 1 399480 + 43199 23131 28726 28745 42581;42582 42581 0.032381890436681715 SRAQQQGAVV 10 Unmodified _SRAQQQGAVV_ 0 0 0 REV__ENST00000567644.5_1_15:74208706-74212300:-|nuORF REV__ENST00000567644.5_1_15:74208706-74212300:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.283254 1042.55196 -0.2896 -0.00015125 0.18927 9.8851E-05 -0.10033 -5.2401E-05 522.282949887815 18.315 0.30923 17.004 16.868 17.177 -1.3109 -0.011757 -0.00070491 NaN 26.268 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 399480 + 43200 23131 28726 28745 0.032381890436681715 SRCCFCLCCG 10 Unmodified _SRCCFCLCCG_ 0 0 0 ENST00000269321.11_1_17:79826145-79826631:-|nuORF ENST00000269321.11_1_17:79826145-79826631:-|nuORF ENST00000269321.11_1_17:79826145-79826631:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.49859619140625 3 365.461799 1093.36357 -0.21414 -7.826E-05 -1.5904 -0.00058124 -1.8046 -0.0006595 365.79592920913944 97.678 0.90366 93.58 93.254 94.158 -4.0978 48 25 2 0 0 0 0.48849 1 19117 19117 0.51642 0 1 5979900 43201 8396 28727 28746 42583 42583 -0.1793791078414415 SRCHFDMTTY 10 Unmodified _SRCHFDMTTY_ 0 0 0 nc|ENSG00000091128|A4D0S4-2|LAMB4;ENST00000475469.1_1_7:107703197-107763609:-|nuORF;nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4 nc|ENSG00000091128|A4D0S4-2|LAMB4 nc|ENSG00000091128|A4D0S4-2|LAMB4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.765380859375 2 630.76044 1259.50633 NaN NaN NaN NaN NaN NaN NaN 117.19 1 112.6 112.1 113.1 -4.5815 0 0 0 2.8426 1 22486 22486 0.26539 0 1 43202 1803 28728 28747 42584 42584 -0.11304540525225093 SRCHFDMTTY 10 Unmodified _SRCHFDMTTY_ 0 0 0 nc|ENSG00000091128|A4D0S4-2|LAMB4;ENST00000475469.1_1_7:107703197-107763609:-|nuORF;nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4 nc|ENSG00000091128|A4D0S4-2|LAMB4 nc|ENSG00000091128|A4D0S4-2|LAMB4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7598876953125 2 630.76044 1259.50633 NaN NaN NaN NaN NaN NaN NaN 134.71 1 129.84 129.34 130.34 -4.8726 0 0 0 2.8426 1 25876 25876 0.013265 0 1 43203 1803 28728 28747 42585 42585 -0.11304540525225093 SRCMAVLFL 9 Unmodified _SRCMAVLFL_ 0 0 0 ENST00000575894.1_1_16:697354-697711:+|nuORF ENST00000575894.1_1_16:697354-697711:+|nuORF ENST00000575894.1_1_16:697354-697711:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 347.2539367675781 3 347.185757 1038.53544 NaN NaN NaN NaN NaN NaN NaN 104.76 1 100.71 100.21 101.21 -4.0543 0 0 0 0.23508 1 20149 20149 2.4985 0 1 43204 11459 28729 28748 42586 42586 0.01771648561702932 SRCPETRAGS 10 Unmodified _SRCPETRAGS_ 0 0 0 REV__ENST00000562782.1_1_16:89180808-89181345:-|nuORF REV__ENST00000562782.1_1_16:89180808-89181345:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2776489257812 2 532.251097 1062.48764 1.091 0.00058066 -0.67256 -0.00035797 0.4184 0.00022269 532.2506193191916 24.718 1.5656 23.07 22.365 23.931 -1.6482 101 44 3 0 0 0 0.72988 1 4329 4329 8.1555 0.24537 1 5178400 + 43205 23068 28730 28749 42587 42587 -0.0411033410480286 SRCQGASG 8 Unmodified _SRCQGASG_ 0 0 0 ENSG00000196227|ENST00000360816|FAM217B;FAM217B|p.T210Lfs*9|1|0.28|ENSG00000196227|chr20:59944565-59944565|C/-|frameshift_variant ENSG00000196227|ENST00000360816|FAM217B ENSG00000196227|ENST00000360816|FAM217B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 383.2054443359375 2 383.169044 764.323536 NaN NaN NaN NaN NaN NaN NaN 79.938 1 76.134 75.634 76.634 -3.8048 0 0 0 0.21486 1 15169 15169 2.3027 0 1 43206 7248 28731 28750 42588 42588 -0.06805306804869815 SRDKFIREL 9 Unmodified _SRDKFIREL_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 389.545654296875 3 388.555895 1162.64586 -0.21245 -8.2548E-05 0.12136 4.7153E-05 -0.091092 -3.5394E-05 388.55591535329745 55.508 0.78437 55.508 55.086 55.87 0 56 21 4 0 0 0 0.25976 1 10630 10630 22.109 11.341 1 5903400 43207 7286 28732 28751 42589 42589 0.071039081459503 SRDKFIREL 9 Unmodified _SRDKFIREL_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 388.555895 1162.64586 -0.29846 -0.00011597 0.13877 5.3921E-05 -0.15969 -6.2047E-05 388.55593701321254 58.252 0.75517 55.342 54.928 55.683 -2.9105 -0.022328 -2.7691E-05 NaN 22.109 51 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6266500 43208 7286 28732 28751 0.071039081459503 SRDKFIREL 9 Unmodified _SRDKFIREL_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 388.555895 1162.64586 0.072998 2.8364E-05 -0.040447 -1.5716E-05 0.032551 1.2648E-05 388.5558301724696 58.492 0.73977 55.24 54.927 55.666 -3.2517 -0.12375 -0.0002366 NaN 22.109 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3641300 43209 7286 28732 28751 0.071039081459503 SRDKFIREL 9 Unmodified _SRDKFIREL_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 388.555895 1162.64586 -0.54279 -0.00021091 0.44793 0.00017404 -0.094867 -3.6861E-05 388.55605610423333 58.571 0.65551 55.366 54.99 55.646 -3.2052 0.0018006 0.00033268 NaN 22.109 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4459700 43210 7286 28732 28751 0.071039081459503 SRDKGAER 8 Unmodified _SRDKGAER_ 0 0 0 REV__ENSG00000196118|ENST00000543610|CFAP119 REV__ENSG00000196118|ENST00000543610|CFAP119 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2427062988281 2 459.741222 917.467892 -0.022191 -1.0202E-05 0.55997 0.00025744 0.53778 0.00024724 459.741429740106 84.22 2.3722 80.508 79.816 82.188 -3.7117 142 67 3 0 0 0 8448 1 16283 16283 0.68139 0 1 4900000 + 43211 19218 28733 28752 42590 42590 0.005856579467604206 SRDRLYRRRRM 11 Unmodified _SRDRLYRRRRM_ 0 0 0 REV__ADCY2|p.R914Sfs*9|1|0.46|ENSG00000078295|chr5:7802326-7802327|-/T|frameshift_variant REV__ADCY2|p.R914Sfs*9|1|0.46|ENSG00000078295|chr5:7802326-7802327|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2799682617188 3 522.295303 1563.86408 -0.56751 -0.00029641 4.3914 0.0022936 3.8239 0.0019972 522.633199892022 152.1 0.10928 146.87 146.81 146.92 -5.2365 4 2 2 0 0 0 0.96218 1 29483 29483 0.40827 0 1 1012100 + 43212 12955 28734 28753 42591 42591 0.10470194516574338 SRDRNGVL 8 Unmodified _SRDRNGVL_ 0 0 0 REV__ENST00000525337.1_1_11:59522139-59522391:-|nuORF REV__ENST00000525337.1_1_11:59522139-59522391:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.1694641113281 3 306.170152 915.488627 NaN NaN NaN NaN NaN NaN NaN 79.248 1 79.248 78.748 79.748 0 0 0 0 0.21486 1 15420 15420 0.45834 0 1 + 43213 22681 28735 28754 42592 42592 0.02750248326435667 SRDWIRGW 8 Unmodified _SRDWIRGW_ 0 0 0 REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 359.0455322265625 3 359.185914 1074.53591 -0.78625 -0.00028241 -0.54361 -0.00019526 -1.3299 -0.00047767 359.18569775750757 46.235 0.44595 43.369 43.165 43.611 -2.8665 15 12 2 0 0 0 0.99885 1 8434 8434 5.7319 2.4505 1 884960 + 43214 21968 28736 28755 42593 42593 0.0016252759742201306 SRDWIRGW 8 Unmodified _SRDWIRGW_ 0 0 0 REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 359.185914 1074.53591 -0.0024986 -8.9745E-07 -1.3313 -0.00047819 -1.3338 -0.00047909 359.18540884760876 43.239 0.37844 43.239 43.054 43.433 0 -0.081772 -0.00034512 NaN 5.7319 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 998610 + 43215 21968 28736 28755 0.0016252759742201306 SRDWIRGW 8 Unmodified _SRDWIRGW_ 0 0 0 REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.185914 1074.53591 -0.28801 -0.00010345 -1.1066 -0.00039748 -1.3946 -0.00050093 359.18552653745877 46.168 0.41732 43.328 43.068 43.486 -2.8409 0.0063759 -0.000103 NaN 5.7319 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 733160 + 43216 21968 28736 28755 0.0016252759742201306 SRDWIRGW 8 Unmodified _SRDWIRGW_ 0 0 0 REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.185914 1074.53591 -0.0080853 -2.9041E-06 -1.3041 -0.0004684 -1.3122 -0.00047131 359.1853870638005 46.214 0.44981 43.349 43.138 43.588 -2.8653 0.027728 -0.00031577 NaN 5.7319 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 452110 + 43217 21968 28736 28755 0.0016252759742201306 SREFFFLLSQ 10 Unmodified _SREFFFLLSQ_ 0 0 0 HECW1|p.F1315*|1|0.35|ENSG00000002746|chr7:43509045-43509046|TT/-|frameshift_variant;nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1 HECW1|p.F1315*|1|0.35|ENSG00000002746|chr7:43509045-43509046|TT/-|frameshift_variant HECW1|p.F1315*|1|0.35|ENSG00000002746|chr7:43509045-43509046|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.251220703125 3 425.224034 1272.65027 0.10059 4.2774E-05 0.41232 0.00017533 0.51291 0.0002181 425.2242508337979 95.684 0.7133 91.493 91.173 91.886 -4.1911 33 20 2 0 0 0 0.51405 1 18238 18238 3.8763 2.4212 1 1383000 43218 963 28737 28756 42594 42594 0.024853725688672057 SREFFFLLSQ 10 Unmodified _SREFFFLLSQ_ 0 0 0 HECW1|p.F1315*|1|0.35|ENSG00000002746|chr7:43509045-43509046|TT/-|frameshift_variant;nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1 HECW1|p.F1315*|1|0.35|ENSG00000002746|chr7:43509045-43509046|TT/-|frameshift_variant HECW1|p.F1315*|1|0.35|ENSG00000002746|chr7:43509045-43509046|TT/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 425.224034 1272.65027 -0.10659 -4.5326E-05 0.47644 0.0002026 0.36985 0.00015727 425.55859230816776 95.86 0.65211 91.811 91.374 92.026 -4.0496 0.22799 -3.4856E-05 NaN 3.8763 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1426900 43219 963 28737 28756 0.024853725688672057 SREFSRAC 8 Unmodified _SREFSRAC_ 0 0 0 REV__nc|ENSG00000286025|P0DSO1|FAM246C REV__nc|ENSG00000286025|P0DSO1|FAM246C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.19482421875 3 319.151993 954.434149 NaN NaN NaN NaN NaN NaN NaN 128.06 1 123.32 122.82 123.82 -4.7408 0 0 0 0.21486 1 24638 24638 0.45834 0 1 + 43220 24320 28738 28757 42595 42595 -0.04489086816647614 SRELEKKL 8 Unmodified _SRELEKKL_ 0 0 0 GNAT1|p.Q90Pfs*16|1|0.34|ENSG00000114349|chr3:50193378-50193379|-/CATCC|frameshift_variant;ENSG00000114349|ENST00000232461|GNAT1 GNAT1|p.Q90Pfs*16|1|0.34|ENSG00000114349|chr3:50193378-50193379|-/CATCC|frameshift_variant GNAT1|p.Q90Pfs*16|1|0.34|ENSG00000114349|chr3:50193378-50193379|-/CATCC|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.83001708984375 3 334.869591 1001.58694 -0.33643 -0.00011266 0.21174 7.0906E-05 -0.12469 -4.1755E-05 334.8696325546693 70.778 0.63806 67.311 66.954 67.592 -3.467 40 17 3 0 0 0 0.89687 1 13340 13340 3.2813 0 1 2570900 43221 2784 28739 28758 42596 42596 0.08621431851622674 SRELEKKL 8 Unmodified _SRELEKKL_ 0 0 0 GNAT1|p.Q90Pfs*16|1|0.34|ENSG00000114349|chr3:50193378-50193379|-/CATCC|frameshift_variant;ENSG00000114349|ENST00000232461|GNAT1 GNAT1|p.Q90Pfs*16|1|0.34|ENSG00000114349|chr3:50193378-50193379|-/CATCC|frameshift_variant GNAT1|p.Q90Pfs*16|1|0.34|ENSG00000114349|chr3:50193378-50193379|-/CATCC|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 334.869591 1001.58694 -0.38548 -0.00012908 0.21244 7.114E-05 -0.17304 -5.7945E-05 334.86964301375656 70.446 0.70535 67.196 66.79 67.495 -3.2492 -0.051687 0.00014613 NaN 3.2813 39 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2990100 43222 2784 28739 28758 0.08621431851622674 SRELEKKL 8 Unmodified _SRELEKKL_ 0 0 0 GNAT1|p.Q90Pfs*16|1|0.34|ENSG00000114349|chr3:50193378-50193379|-/CATCC|frameshift_variant;ENSG00000114349|ENST00000232461|GNAT1 GNAT1|p.Q90Pfs*16|1|0.34|ENSG00000114349|chr3:50193378-50193379|-/CATCC|frameshift_variant GNAT1|p.Q90Pfs*16|1|0.34|ENSG00000114349|chr3:50193378-50193379|-/CATCC|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 334.869591 1001.58694 0.35863 0.00012009 -0.24888 -8.3344E-05 0.10975 3.675E-05 334.86942449480233 70.817 0.69811 67.237 66.911 67.609 -3.5798 -0.011137 -0.00031732 NaN 3.2813 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2194600 43223 2784 28739 28758 0.08621431851622674 SREPTVPPP 9 Unmodified _SREPTVPPP_ 0 0 0 REV__ENSG00000167992|ENST00000335613|VWCE REV__ENSG00000167992|ENST00000335613|VWCE MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26513671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 63.309 1 63.309 62.809 63.809 0 0 0 0 0.23508 1 12171 12171 10.074 0 1 + 43224 17984 28740 28759 42597 42597 0.02332883409144415 SREQTVYY 8 Unmodified _SREQTVYY_ 0 0 0 ENST00000443722.5_1_7:102939135-102952660:+|nuORF;ENST00000498530.5_1_7:102937906-102949569:+|nuORF;ENST00000453466.1_1_7:102939135-102952715:+|nuORF;ENST00000444457.5_1_7:102938385-102969496:+|nuORF;ENSG00000105819|ENST00000249269|PMPCB ENST00000443722.5_1_7:102939135-102952660:+|nuORF ENST00000443722.5_1_7:102939135-102952660:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6766967773438 2 523.251089 1044.48762 0.18668 9.7678E-05 -0.47549 -0.0002488 -0.28882 -0.00015112 523.2508166249489 34.039 1.587 34.039 33.616 35.203 0 105 45 4 0 0 0 0.31324 1 6189 6189 36.127 2.0246 1 68901000 43225 2344 28741 28760 42598 42598 -0.03284010833135653 SRFAKVHIL 9 Unmodified _SRFAKVHIL_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENST00000471049.5_1_10:99197505-99205308:-|nuORF ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5538024902344 3 357.553826 1069.63965 -0.58812 -0.00021029 0.69117 0.00024713 0.10305 3.6846E-05 357.55403690479693 67.593 0.59819 67.593 67.227 67.826 0 43 16 3 0 0 0 0.19452 1 13068 13068 37.771 17.19 1 2397000 43226 6137 28742 28761 42599 42599 0.10761434705091233 SRFAKVHIL 9 Unmodified _SRFAKVHIL_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENST00000471049.5_1_10:99197505-99205308:-|nuORF ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5537414550781 3 357.553826 1069.63965 -0.37777 -0.00013507 0.30183 0.00010792 -0.075936 -2.7151E-05 357.55392026250104 70.549 1.0609 67.3 66.755 67.816 -3.2492 57 29 3 0 0 0 0.21725 1 13735 13735 36.395 12.605 1 3354700 43227 6137 28742 28761 42600 42600 0.10761434705091233 SRFAKVHIL 9 Unmodified _SRFAKVHIL_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENST00000471049.5_1_10:99197505-99205308:-|nuORF ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5539855957031 3 357.553826 1069.63965 0.36112 0.00012912 -0.22493 -8.0423E-05 0.13619 4.8695E-05 357.5537345978107 70.761 0.63213 67.181 66.838 67.47 -3.5798 37 17 3 0 0 0 0.41321 2 13352 13314;13352 24.957 11.342 1 1608300 43228 6137 28742 28761 42601;42602 42602 0.10761434705091233 SRFAKVHIL 9 Unmodified _SRFAKVHIL_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENST00000471049.5_1_10:99197505-99205308:-|nuORF ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5539245605469 3 357.553826 1069.63965 -0.33684 -0.00012044 0.40389 0.00014441 0.067052 2.3975E-05 357.5539125020173 70.652 0.81473 67.185 66.777 67.592 -3.467 49 22 3 0 0 0 0.25495 2 13380 13380;13428 34.222 11.564 1 2851600 43229 6137 28742 28761 42603;42604 42603 0.10761434705091233 SRFAKVHIL 9 Unmodified _SRFAKVHIL_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENST00000471049.5_1_10:99197505-99205308:-|nuORF ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.553826 1069.63965 -0.37777 -0.00013507 0.30183 0.00010792 -0.075936 -2.7151E-05 357.55392026250104 70.549 1.0609 67.3 66.755 67.816 -3.2492 -0.014714 1.4171E-05 NaN 37.771 57 29 3 NaN NaN NaN NaN 0 NaN NaN 0 3354700 43230 6137 28742 28761 0.10761434705091233 SRFMFHQL 8 Unmodified _SRFMFHQL_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2704467773438 2 533.268561 1064.52257 0.17015 9.0737E-05 1.2419 0.00066227 1.4121 0.00075301 533.2696479088426 126.87 0.77079 122.25 121.84 122.61 -4.6172 47 21 3 0 0 0 8448 1 24953 24953 3.5871 0 1 2899600 + 43231 13287 28743 28762 42605 42605 -0.007110465061714422 SRFSNVYHL 9 Unmodified _SRFSNVYHL_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2047424316406 3 374.861207 1121.56179 0.2713 0.0001017 -0.30332 -0.0001137 -0.032018 -1.2002E-05 374.86102616784206 79.771 0.69807 79.771 79.377 80.075 0 44 19 3 0 0 0 0.84094 1 15446 15446 6.1918 0 1 7686200 43232 1287 28744 28763 42606 42606 0.005873770490552488 SRFSNVYHL 9 Unmodified _SRFSNVYHL_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.20526123046875 3 374.861207 1121.56179 -0.24862 -9.3197E-05 0.17581 6.5905E-05 -0.072807 -2.7293E-05 374.86120519176853 83.276 0.78233 79.668 79.231 80.013 -3.6079 52 21 3 0 0 0 0.84094 1 16206 16206 13.615 13.615 1 6061000 43233 1287 28744 28763 42607 42607 0.005873770490552488 SRFSNVYHL 9 Unmodified _SRFSNVYHL_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.20538330078125 3 374.861207 1121.56179 0.12404 4.6497E-05 -0.15626 -5.8577E-05 -0.032225 -1.208E-05 374.8611019249539 83.456 0.67477 79.582 79.223 79.897 -3.8736 43 18 3 0 0 0 0.79986 1 15791 15791 18.373 8.2225 1 4426300 43234 1287 28744 28763 42608 42608 0.005873770490552488 SRFSNVYHL 9 Unmodified _SRFSNVYHL_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2051696777344 3 374.861207 1121.56179 -0.76841 -0.00028805 0.82501 0.00030926 0.056594 2.1215E-05 374.8614393730815 83.294 0.75674 79.596 79.178 79.935 -3.6985 50 21 3 0 0 0 0.81963 1 15839 15839 16.566 16.566 1 5382700 43235 1287 28744 28763 42609 42609 0.005873770490552488 SRFVGSELAE 10 Unmodified _SRFVGSELAE_ 0 0 0 REV__POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant REV__POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7799682617188 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 57.953 1 57.953 57.453 58.453 0 0 0 0 2.8426 1 11087 11087 5.8681 0 1 + 43236 18538 28745 28764 42610 42610 -0.0026405277030789875 SRGGSGGK 8 Unmodified _SRGGSGGK_ 0 0 0 REV__ENST00000346213.8_1_17:40282588-40307016:-|nuORF REV__ENST00000346213.8_1_17:40282588-40307016:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.1858825683594 2 353.185552 704.35655 NaN NaN NaN NaN NaN NaN NaN 42.479 1 39.873 39.373 40.373 -2.606 0 0 0 0.2396 1 7642 7642 0.30703 0 1 + 43237 20755 28746 28765 42611 42611 -0.00745356690515564 SRGKKKKKK 9 Unmodified _SRGKKKKKK_ 0 0 0 ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.N409Kfs*17|1|0.25|ENSG00000139767|chr12:119151159-119151160|-/C|frameshift_variant ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.1766662597656 3 363.252258 1086.73495 NaN NaN NaN NaN NaN NaN NaN 16.758 1 15.542 15.042 16.042 -1.2159 0 0 0 0.19635 1 2654 2654 0 0 1 43238 4266 28747 28766 42612 42612 0.19504787896130438 SRGKKKKKK 9 Unmodified _SRGKKKKKK_ 0 0 0 ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.N409Kfs*17|1|0.25|ENSG00000139767|chr12:119151159-119151160|-/C|frameshift_variant ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.21490478515625 3 363.252258 1086.73495 NaN NaN NaN NaN NaN NaN NaN 30.211 1 28.095 27.595 28.595 -2.1167 0 0 0 0.19635 1 5449 5449 0 0 1 43239 4266 28747 28766 42613 42613 0.19504787896130438 SRGKKKKKK 9 Unmodified _SRGKKKKKK_ 0 0 0 ENSG00000139767|ENST00000267260|SRRM4;SRRM4|p.N409Kfs*17|1|0.25|ENSG00000139767|chr12:119151159-119151160|-/C|frameshift_variant ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.51849365234375 3 363.252258 1086.73495 NaN NaN NaN NaN NaN NaN NaN 30.101 1 28.208 27.708 28.708 -1.8928 0 0 0 0.19635 1 5146 5146 0 0 1 43240 4266 28747 28766 42614 42614 0.19504787896130438 SRGPGTSF 8 Unmodified _SRGPGTSF_ 0 0 0 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.21197509765625 2 404.701035 807.387516 0.029076 1.1767E-05 0.02627 1.0632E-05 0.055346 2.2399E-05 404.7009886080116 29.511 0.51867 29.511 29.263 29.782 0 24 14 2 0 0 0 0.71876 1 5250 5250 11.64 0 1 1289800 43241 2923 28748 28767 42615 42615 -0.023882033762788524 SRGPGTSF 8 Unmodified _SRGPGTSF_ 0 0 0 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 404.701035 807.387516 0.27805 0.00011253 -0.62048 -0.00025111 -0.34243 -0.00013858 404.7008060118699 31.311 0.53214 29.285 29.057 29.589 -2.0264 -0.072275 -0.0003475 NaN 11.64 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 953640 43242 2923 28748 28767 -0.023882033762788524 SRGPGTSF 8 Unmodified _SRGPGTSF_ 0 0 0 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 404.701035 807.387516 0.0083323 3.3721E-06 -0.022555 -9.128E-06 -0.014223 -5.7559E-06 404.7010243810485 31.476 0.49386 29.328 29.057 29.551 -2.1483 -0.029255 0.00013647 NaN 11.64 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 723020 43243 2923 28748 28767 -0.023882033762788524 SRGPGTSFEF 10 Unmodified _SRGPGTSFEF_ 0 0 0 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.771728515625 2 542.756538 1083.49852 0.5412 0.00029374 -0.5162 -0.00028017 0.024996 1.3567E-05 542.7562573310619 99.024 0.86919 99.024 98.54 99.41 0 82 24 5 0 0 0 0.11758 2 19393 19393;19459 55.235 32.498 1 43430000 43244 2923 28749 28768 42616;42617 42616 -0.0398860845884883 SRGPGTSFEF 10 Unmodified _SRGPGTSFEF_ 0 0 0 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7777099609375 2 542.756538 1083.49852 0.26717 0.00014501 -0.041013 -2.226E-05 0.22616 0.00012275 542.7564407776412 103.2 0.97954 98.851 98.371 99.35 -4.346 83 27 4 0 0 0 0.25377 1 19794 19794 40.725 17.989 1 30904000 43245 2923 28749 28768 42618 42618 -0.0398860845884883 SRGPGTSFEF 10 Unmodified _SRGPGTSFEF_ 0 0 0 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.756538 1083.49852 0.14096 7.6507E-05 -0.19958 -0.00010833 -0.058624 -3.1818E-05 542.7564937328857 103.18 1.0018 98.99 98.481 99.482 -4.1861 0.046941 0.0001737 NaN 55.235 125 28 7 NaN NaN NaN NaN 0 NaN NaN 0 68390000 43246 2923 28749 28768 -0.0398860845884883 SRGPGTSFEF 10 Unmodified _SRGPGTSFEF_ 0 0 0 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 ENSG00000116288|ENST00000338639|PARK7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.756538 1083.49852 0.6604 0.00035844 -0.71081 -0.0003858 -0.050407 -2.7359E-05 542.7562727644778 102.93 1.4139 98.908 98.388 99.802 -4.0212 -0.034801 -0.00038124 NaN 55.235 128 39 6 NaN NaN NaN NaN 0 NaN NaN 0 40083000 43247 2923 28749 28768 -0.0398860845884883 SRHARLIDDP 10 Unmodified _SRHARLIDDP_ 0 0 0 REV__KIF19|p.H272Tfs*16|1|0.15|ENSG00000196169|chr17:74346412-74346412|C/-|frameshift_variant REV__KIF19|p.H272Tfs*16|1|0.15|ENSG00000196169|chr17:74346412-74346412|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.263916015625 2 590.315086 1178.61562 NaN NaN NaN NaN NaN NaN NaN 135.4 1 130.76 130.26 131.26 -4.6399 0 0 0 0.22588 1 26705 26705 10.074 0 1 + 43248 19223 28750 28769 42619 42619 0.03345549480764021 SRHESLVNDF 10 Unmodified _SRHESLVNDF_ 0 0 0 ENSG00000197361|ENST00000638704|FBXL22;nc|ENSG00000197361|Q6P050|FBXL22 ENSG00000197361|ENST00000638704|FBXL22 ENSG00000197361|ENST00000638704|FBXL22 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2898559570312 2 602.291276 1202.568 NaN NaN NaN NaN NaN NaN NaN 73.215 1 69.538 69.038 70.038 -3.6764 0 0 0 2.8426 1 13836 13836 5.8681 5.8367 1 43249 7359 28751 28770 42620 42620 -0.025181495101151086 SRHFLPEAS 9 Unmodified _SRHFLPEAS_ 0 0 0 ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000574671.5_1_17:79478712-79478850:-|nuORF ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENST00000576214.2_1_17:79478712-79479765:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2717895507812 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 18.56 1 17.235 16.735 17.735 -1.3251 0 0 0 0.22193 1 2791 2791 17.113 1.2657 1 43250 11461 28752 28771 42621 42621 3.401640651645721E-05 SRHHTGTTGAV 11 Unmodified _SRHHTGTTGAV_ 0 0 0 REV__AluJr_dup72800|chr17:59204747-59205047:+|1.9610225923897493|0.1893768988027336|3.37|478.0|14|1|anti-sense REV__AluJr_dup72800|chr17:59204747-59205047:+|1.9610225923897493|0.1893768988027336|3.37|478.0|14|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2116394042969 3 375.191616 1122.55302 NaN NaN NaN NaN NaN NaN NaN 63.29 1 60.293 59.793 60.793 -2.9975 0 0 0 0.22718 1 12226 12226 10.527 2.5821 1 + 43251 13020 28753 28772 42622 42622 -0.003355965874334288 SRHPCPLF 8 Unmodified _SRHPCPLF_ 0 0 0 ENST00000371975.8_1_1:46713425-46713950:+|nuORF ENST00000371975.8_1_1:46713425-46713950:+|nuORF ENST00000371975.8_1_1:46713425-46713950:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.741943359375 2 478.742179 955.469806 NaN NaN NaN NaN NaN NaN NaN 88.495 1 84.702 84.202 85.202 -3.7926 0 0 0 0.19954 1 17312 17312 24.674 0 1 43252 9170 28754 28773 42623 42623 -0.009710045689985236 SRHPCPLF 8 Unmodified _SRHPCPLF_ 0 0 0 ENST00000371975.8_1_1:46713425-46713950:+|nuORF ENST00000371975.8_1_1:46713425-46713950:+|nuORF ENST00000371975.8_1_1:46713425-46713950:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74310302734375 2 478.742179 955.469806 NaN NaN NaN NaN NaN NaN NaN 112.17 1 107.75 107.25 108.25 -4.4231 0 0 0 0.21323 1 22107 22107 14.582 0 1 43253 9170 28754 28773 42624 42624 -0.009710045689985236 SRHPEAEM 8 Unmodified _SRHPEAEM_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7294921875 2 478.716359 955.418164 NaN NaN NaN NaN NaN NaN NaN 94.08 1 90.089 89.589 90.589 -3.9907 0 0 0 0.22699 1 18430 18430 0.25148 0 1 43254 6310 28755 28774 42625 42625 -0.06132793053552632 SRHRRKIL 8 Unmodified _SRHRRKIL_ 0 0 0 REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|47|3|sense REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|47|3|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2737426757812 2 533.341241 1064.66793 NaN NaN NaN NaN NaN NaN NaN 162.22 1 157.03 156.53 157.53 -5.1878 0 0 0 0.2396 1 31491 31491 0.12286 0 1 + 43255 23745 28756 28775 42626 42626 0.1381817740502811 SRHRSWWRERW 11 Unmodified _SRHRSWWRERW_ 0 0 0 ENST00000466885.5_1_20:61872851-61879872:-|nuORF;ENSG00000101198|ENST00000370316|NKAIN4 ENST00000466885.5_1_20:61872851-61879872:-|nuORF ENST00000466885.5_1_20:61872851-61879872:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7876586914062 3 547.94678 1640.81851 NaN NaN NaN NaN NaN NaN NaN 70.712 1 67.463 66.963 67.963 -3.2492 0 0 0 0.23698 1 13765 13765 0.40827 0.31342 1 43256 2047 28757 28776 42627 42627 0.023732923258876326 SRHRYFYWRRD 11 Unmodified _SRHRYFYWRRD_ 0 0 0 REV__ENST00000450775.2_1_16:725790-727700:+|nuORF REV__ENST00000450775.2_1_16:725790-727700:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7759399414062 3 547.943035 1640.80728 0.18347 0.00010053 -0.058538 -3.2076E-05 0.12493 6.8455E-05 548.2786903690255 155.24 0.17694 149.95 149.86 150.03 -5.2854 5 4 2 0 0 0 0.89134 1 30124 30124 0.094841 0 1 1220200 + 43257 14872 28758 28777 42628 42628 0.01250470231707368 SRKDHWVQIKY 11 Unmodified _SRKDHWVQIKY_ 0 0 0 REV__LOXHD1|p.R490Q|1|0.19|ENSG00000167210|chr18:46592547-46592547|C/T|missense_variant REV__LOXHD1|p.R490Q|1|0.19|ENSG00000167210|chr18:46592547-46592547|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 487.2532958984375 3 487.265004 1458.77318 NaN NaN NaN NaN NaN NaN NaN 73.997 1 70.321 69.821 70.821 -3.6764 0 0 0 0.22632 1 13994 13994 0.58532 0 1 + 43258 23806 28759 28778 42629 42629 0.06214629020132634 SRKKKKDKKK 10 Unmodified _SRKKKKDKKK_ 0 0 0 NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2401428222656 3 425.285739 1272.83539 NaN NaN NaN NaN NaN NaN NaN 112.04 1 107.62 107.12 108.12 -4.4231 0 0 0 2.8426 1 22080 22080 0.0013812 0 1 43259 12709 28760 28779 42630 42630 0.20988400159126286 SRKKKKDKKK 10 Unmodified _SRKKKKDKKK_ 0 0 0 NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2559814453125 3 425.285739 1272.83539 NaN NaN NaN NaN NaN NaN NaN 39.236 1 36.831 36.331 37.331 -2.4049 0 0 0 0.22588 1 7000 7000 0.62683 0.4675 1 43260 12709 28760 28779 42631 42631 0.20988400159126286 SRKKKKDKKK 10 Unmodified _SRKKKKDKKK_ 0 0 0 NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23724365234375 3 425.285739 1272.83539 NaN NaN NaN NaN NaN NaN NaN 122.58 1 118.05 117.55 118.55 -4.5305 0 0 0 0.22588 1 23599 23599 0.62683 0 1 43261 12709 28760 28779 42632 42632 0.20988400159126286 SRKKKKDKKK 10 Unmodified _SRKKKKDKKK_ 0 0 0 NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24224853515625 3 425.285739 1272.83539 NaN NaN NaN NaN NaN NaN NaN 122.61 1 118.08 117.58 118.58 -4.5305 0 0 0 2.8426 1 23605 23605 0.0013812 0 1 43262 12709 28760 28779 42633 42633 0.20988400159126286 SRKLRLTS 8 Unmodified _SRKLRLTS_ 0 0 0 REV__ENST00000461555.1_1_17:16471140-16472262:-|nuORF REV__ENST00000461555.1_1_17:16471140-16472262:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77728271484375 2 480.801083 959.587613 0.39404 0.00018946 -0.13477 -6.4798E-05 0.25927 0.00012466 480.8008900294023 160.94 1.0892 155.68 155.25 156.33 -5.2527 84 30 4 0 0 0 8448 1 31283 31283 0.063987 0 1 37787000 + 43263 21895 28761 28780 42634 42634 0.1062027129131593 SRKRRKGKA 9 Unmodified _SRKRRKGKA_ 0 0 0 IGFBP7|p.K167Rfs*13|1|0.26|ENSG00000163453|chr4:57040911-57040911|G/-|frameshift_variant;nc|ENSG00000163453|Q16270-2|IGFBP7;ENSG00000163453|ENST00000295666|IGFBP7 IGFBP7|p.K167Rfs*13|1|0.26|ENSG00000163453|chr4:57040911-57040911|G/-|frameshift_variant IGFBP7|p.K167Rfs*13|1|0.26|ENSG00000163453|chr4:57040911-57040911|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.9043273925781 3 362.903741 1085.68939 NaN NaN NaN NaN NaN NaN NaN 9.7082 1 9.7082 9.2082 10.208 0 0 0 0 0.23508 1 1152 1152 0 0 1 43264 5429 28762 28781 42635 42635 0.14997562433768508 SRKRRKGKA 9 Unmodified _SRKRRKGKA_ 0 0 0 IGFBP7|p.K167Rfs*13|1|0.26|ENSG00000163453|chr4:57040911-57040911|G/-|frameshift_variant;nc|ENSG00000163453|Q16270-2|IGFBP7;ENSG00000163453|ENST00000295666|IGFBP7 IGFBP7|p.K167Rfs*13|1|0.26|ENSG00000163453|chr4:57040911-57040911|G/-|frameshift_variant IGFBP7|p.K167Rfs*13|1|0.26|ENSG00000163453|chr4:57040911-57040911|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.9034118652344 3 362.903741 1085.68939 NaN NaN NaN NaN NaN NaN NaN 11.267 1 11.267 10.767 11.767 0 0 0 0 0.23508 1 1480 1480 0 0 1 43265 5429 28762 28781 42636 42636 0.14997562433768508 SRKRRKGKA 9 Unmodified _SRKRRKGKA_ 0 0 0 IGFBP7|p.K167Rfs*13|1|0.26|ENSG00000163453|chr4:57040911-57040911|G/-|frameshift_variant;nc|ENSG00000163453|Q16270-2|IGFBP7;ENSG00000163453|ENST00000295666|IGFBP7 IGFBP7|p.K167Rfs*13|1|0.26|ENSG00000163453|chr4:57040911-57040911|G/-|frameshift_variant IGFBP7|p.K167Rfs*13|1|0.26|ENSG00000163453|chr4:57040911-57040911|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.9034423828125 3 362.903741 1085.68939 NaN NaN NaN NaN NaN NaN NaN 11.678 1 11.678 11.178 12.178 0 0 0 0 0.23508 1 1568 1568 0 0 1 43266 5429 28762 28781 42637 42637 0.14997562433768508 SRKRRKGKA 9 Unmodified _SRKRRKGKA_ 0 0 0 IGFBP7|p.K167Rfs*13|1|0.26|ENSG00000163453|chr4:57040911-57040911|G/-|frameshift_variant;nc|ENSG00000163453|Q16270-2|IGFBP7;ENSG00000163453|ENST00000295666|IGFBP7 IGFBP7|p.K167Rfs*13|1|0.26|ENSG00000163453|chr4:57040911-57040911|G/-|frameshift_variant IGFBP7|p.K167Rfs*13|1|0.26|ENSG00000163453|chr4:57040911-57040911|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7833251953125 2 543.851973 1085.68939 NaN NaN NaN NaN NaN NaN NaN 10.041 1 9.2471 8.7471 9.7471 -0.79424 0 0 0 0.23508 1 1217 1217 0 0 1 43267 5429 28762 28781 42638 42638 0.14997562433768508 SRKTKEVYL 9 Unmodified _SRKTKEVYL_ 0 0 0 REV__ENSG00000171487|ENST00000390649|NLRP5 REV__ENSG00000171487|ENST00000390649|NLRP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2205810546875 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 137.2 1 137.2 136.7 137.7 0 0 0 0 0.23508 1 27204 27204 2.4985 0 1 + 43268 18228 28763 28782 42639 42639 0.08329389914410967 SRKWLSWPSY 10 Unmodified _SRKWLSWPSY_ 0 0 0 ENST00000532477.1_1_4:8456189-8477725:+|nuORF ENST00000532477.1_1_4:8456189-8477725:+|nuORF ENST00000532477.1_1_4:8456189-8477725:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2273864746094 3 437.227779 1308.66151 0.1724 7.5377E-05 -0.45332 -0.00019821 -0.28093 -0.00012283 437.2275428787456 32.896 0.55784 32.896 32.571 33.129 0 36 15 3 0 0 0 0.75587 1 6030 6030 3.8763 1.033 1 2262500 43269 10983 28764 28783 42640 42640 0.01952194662999318 SRLEILLLL 9 Unmodified _SRLEILLLL_ 0 0 0 tr|U7T298|U7T298_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00631PE=3SV=1 tr|U7T298|U7T298_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00631PE=3SV=1 tr|U7T298|U7T298_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00631PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0672607421875 3 357.237504 1068.69068 NaN NaN NaN NaN NaN NaN NaN 143.22 1 143.22 142.72 143.72 0 0 0 0 0.23508 1 28574 28574 0.96228 0 1 43270 26352 28765 28784 42641 42641 0.15908338959297907 SRLKSLFEV 9 Unmodified _SRLKSLFEV_ 0 0 0 REV__RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant REV__RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2133483886719 3 360.213358 1077.61824 -0.25879 -9.322E-05 0.31652 0.00011402 0.057731 2.0795E-05 360.2133985812754 20.725 0.42408 20.725 20.495 20.919 0 33 11 4 0 0 0 0.65153 1 3474 3474 9.544 2.4423 1 5264700 + 43271 18503 28766 28785 42642 42642 0.0825400488570267 SRLKSLFEV 9 Unmodified _SRLKSLFEV_ 0 0 0 REV__RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant REV__RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2132873535156 3 360.213358 1077.61824 0.3485 0.00012553 -0.28954 -0.0001043 0.058953 2.1236E-05 360.2131953692514 22.287 0.37768 20.813 20.593 20.971 -1.4742 31 10 4 0 0 0 0.65153 1 3827 3827 9.544 1.5986 1 3899700 + 43272 18503 28766 28785 42643 42643 0.0825400488570267 SRLNFFSAK 9 Unmodified _SRLNFFSAK_ 0 0 0 REV__ENSG00000180530|ENST00000318948|NRIP1 REV__ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5596618652344 3 357.197819 1068.57163 -1.37 -0.00048937 1.1679 0.00041716 -0.20216 -7.2211E-05 357.53259661343037 21.682 0.23779 19.961 19.815 20.053 -1.7211 8 6 2 0 0 0 0.79239 1 3411 3411 2.086 0 1 240430 + 43273 18692 28767 28786 42644 42644 0.04008565054414248 SRLPRARRVHL 11 Unmodified _SRLPRARRVHL_ 0 0 0 REV__ENST00000563365.1_2_2:55509501-55509765:+|nuORF REV__ENST00000563365.1_2_2:55509501-55509765:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 454.2832336425781 3 454.284733 1359.83237 NaN NaN NaN NaN NaN NaN NaN 105.01 1 105.01 104.51 105.51 0 0 0 0 0.22632 1 20642 20642 0.172 0.14579 1 + 43274 23079 28768 28787 42645 42645 0.1668456982497446 SRLWLCITF 9 Unmodified _SRLWLCITF_ 0 0 0 REV__ENSG00000106236|ENST00000265634|NPTX2 REV__ENSG00000106236|ENST00000265634|NPTX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 380.207275390625 3 380.207438 1137.60049 NaN NaN NaN NaN NaN NaN NaN 94.903 1 90.853 90.353 91.353 -4.0496 0 0 0 0.19694 1 18602 18602 0.87518 0.80191 1 + 43275 15036 28769 28788 42646 42646 0.03718966359178921 SRMGAIPVM 9 Unmodified _SRMGAIPVM_ 0 0 0 nc|ENSG00000154639|P78310-7|CXADR;ENSG00000154639|ENST00000284878|CXADR nc|ENSG00000154639|P78310-7|CXADR nc|ENSG00000154639|P78310-7|CXADR MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2515869140625 2 481.251523 960.488493 0.38 0.00018287 0.24287 0.00011688 0.62287 0.00029976 481.25159336220605 102.89 0.75591 102.89 102.48 103.24 0 45 21 3 0 0 0 0.12505 4 20210 20191;20194;20210;20237 47.749 35.068 1 4840000 43276 5018 28770 28789 42647;42648;42649;42650 42649 0.006667890105632068 SRMGAIPVM 9 Unmodified _SRMGAIPVM_ 0 0 0 nc|ENSG00000154639|P78310-7|CXADR;ENSG00000154639|ENST00000284878|CXADR nc|ENSG00000154639|P78310-7|CXADR nc|ENSG00000154639|P78310-7|CXADR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2516784667969 2 481.251523 960.488493 -0.36248 -0.00017445 0.56155 0.00027025 0.19907 9.5801E-05 481.2518328932423 106.89 0.90648 102.63 102.15 103.05 -4.2638 55 25 3 0 0 0 0.11219 4 21029 20995;21029;21080;21123 51.63 26.956 1 11243000 43277 5018 28770 28789 42651;42652;42653;42654 42652 0.006667890105632068 SRMGAIPVM 9 Unmodified _SRMGAIPVM_ 0 0 0 nc|ENSG00000154639|P78310-7|CXADR;ENSG00000154639|ENST00000284878|CXADR nc|ENSG00000154639|P78310-7|CXADR nc|ENSG00000154639|P78310-7|CXADR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25146484375 2 481.251523 960.488493 0.016103 7.7498E-06 0.24577 0.00011828 0.26188 0.00012603 481.25165324421954 107 0.72173 102.59 102.2 102.92 -4.4121 39 20 2 0 0 0 0.17935 2 20519 20505;20519 39.95 16.801 1 6962000 43278 5018 28770 28789 42655;42656 42656 0.006667890105632068 SRMGAIPVM 9 Unmodified _SRMGAIPVM_ 0 0 0 nc|ENSG00000154639|P78310-7|CXADR;ENSG00000154639|ENST00000284878|CXADR nc|ENSG00000154639|P78310-7|CXADR nc|ENSG00000154639|P78310-7|CXADR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25177001953125 2 481.251523 960.488493 0.65251 0.00031402 -0.13608 -6.5487E-05 0.51644 0.00024854 481.2515083554574 106.73 0.75903 102.64 102.26 103.02 -4.0913 39 21 2 0 0 0 0.17935 1 20528 20528 39.95 9.7249 1 3656300 43279 5018 28770 28789 42657 42657 0.006667890105632068 SRMLAQQYYMI 11 Unmodified _SRMLAQQYYMI_ 0 0 0 REV__nc|ENSG00000108370|O75916-2|RGS9 REV__nc|ENSG00000108370|O75916-2|RGS9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 702.480224609375 2 702.34414 1402.67373 NaN NaN NaN NaN NaN NaN NaN 167.11 1 162.16 161.66 162.66 -4.948 0 0 0 0.22632 1 32836 32836 0.50596 0.50457 1 + 43280 15117 28771 28790 42658 42658 -0.011502729804988121 SRMPTQQLY 9 Unmodified _SRMPTQQLY_ 0 0 0 NSUN7|p.H674Q|1|0.35|ENSG00000179299|chr4:40808804-40808804|T/G|missense_variant NSUN7|p.H674Q|1|0.35|ENSG00000179299|chr4:40808804-40808804|T/G|missense_variant NSUN7|p.H674Q|1|0.35|ENSG00000179299|chr4:40808804-40808804|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2201232910156 3 375.190336 1122.54918 -0.49629 -0.0001862 -1.5183 -0.00056965 -2.0146 -0.00075585 375.18980748924287 68.054 0.57631 68.054 67.963 68.539 0 18 15 2 0 0 0 0.72996 1 13204 13204 4.897 0.36815 1 1136500 43281 12711 28772 28791 42659 42659 -0.00719402405479741 SRNFYWIWNDY 11 Unmodified _SRNFYWIWNDY_ 0 0 0 REV__NAALADL1|p.R489W|1|0.29|ENSG00000168060|chr11:65047690-65047690|G/A|missense_variant REV__NAALADL1|p.R489W|1|0.29|ENSG00000168060|chr11:65047690-65047690|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2698974609375 3 521.905364 1562.69426 -0.37256 -0.00019444 -1.716 -0.00089559 -2.0886 -0.00109 521.9031973591441 69.366 0.18096 65.83 65.688 65.869 -3.5362 5 4 2 0 0 0 0.66234 1 13046 13046 0.50596 0.27741 1 936600 + 43282 23913 28773 28792 42660 42660 -0.06457643004819147 SRNLSAFF 8 Unmodified _SRNLSAFF_ 0 0 0 ENSG00000135702|ENST00000336257|CHST5;nc|ENSG00000135702|Q9GZS9-2|CHST5 ENSG00000135702|ENST00000336257|CHST5 ENSG00000135702|ENST00000336257|CHST5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 471.2447204589844 2 471.245609 940.476666 NaN NaN NaN NaN NaN NaN NaN 142.48 1 137.45 136.95 137.95 -5.0261 0 0 0 0.23182 1 27464 27464 0.25148 0.12861 1 43283 3945 28774 28793 42661 42661 0.0040463158322836534 SRPLPLLGGG 10 Unmodified _SRPLPLLGGG_ 0 0 0 ENST00000470356.3_1_19:3572943-3574226:+|nuORF;ENST00000488973.6_1_19:3573129-3574226:+|nuORF ENST00000470356.3_1_19:3572943-3574226:+|nuORF ENST00000470356.3_1_19:3572943-3574226:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 322.8680419921875 3 322.862548 965.565815 NaN NaN NaN NaN NaN NaN NaN 7.3046 1 6.2898 5.7898 6.7898 -1.0148 0 0 0 0.22588 1 576 576 0 0 1 43284 10197 28775 28794 42662 42662 0.0816546654278909 SRQEFKKLKIR 11 Unmodified _SRQEFKKLKIR_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.29827880859375 3 478.296415 1431.86742 NaN NaN NaN NaN NaN NaN NaN 12.258 1 11.248 10.748 11.748 -1.0098 0 0 0 0.22632 1 1687 1687 0 0 1 43285 3804 28776 28795 42663 42663 0.1687576784227076 SRRHRRHLRRR 11 Unmodified _SRRHRRHLRRR_ 0 0 0 REV__ENST00000370651.5_1_6:64282454-64282589:+|nuORF REV__ENST00000370651.5_1_6:64282454-64282589:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 396.8694763183594 4 397.245341 1584.95226 -0.045637 -1.8129E-05 -1.4886 -0.00059134 -1.5342 -0.00060947 397.24440674235984 21.904 0.41736 21.904 21.704 22.121 0 26 11 3 0 0 0 0.89134 1 3718 3718 0.094841 0.094841 1 5222700 + 43286 20988 28777 28796 42664 42664 0.18317995942084053 SRRHRRHLRRR 11 Unmodified _SRRHRRHLRRR_ 0 0 0 REV__ENST00000370651.5_1_6:64282454-64282589:+|nuORF REV__ENST00000370651.5_1_6:64282454-64282589:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 397.245341 1584.95226 -0.95759 -0.0003804 -0.54966 -0.00021835 -1.5072 -0.00059875 397.2447761873808 23.616 0.45679 21.828 21.593 22.049 -1.7886 -0.037878 0.00068915 NaN 0.094841 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3446200 + 43287 20988 28777 28796 0.18317995942084053 SRRKHRRRRRR 11 Unmodified _SRRKHRRRRRR_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;nc|ENSG00000176444|P49760-2|CLK2;ENST00000476983.5_1_1:155238132-155243105:-|nuORF;ENST00000484699.1_1_1:155239218-155239476:-|nuORF nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.274169921875 3 540.675729 1619.00536 0.23147 0.00012515 0.40932 0.00022131 0.64079 0.00034646 540.6750806828732 139.36 0.20535 134.72 134.55 134.76 -4.6439 6 5 2 0 0 0 0.89126 1 27501 27501 0.00056442 0 1 1200600 43288 6468 28778 28797 42665 42665 0.22061373724727673 SRRKKRFLK 9 Unmodified _SRRKKRFLK_ 0 0 0 REV__KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant REV__KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 609.7678833007812 2 609.898923 1217.78329 NaN NaN NaN NaN NaN NaN NaN 165.02 1 160.04 159.54 160.54 -4.9811 0 0 0 0.19628 1 32225 32225 0.073264 0 1 + 43289 14520 28779 28798 42666 42666 0.18311281536011847 SRRLIRTYQLY 11 Unmodified _SRRLIRTYQLY_ 0 0 0 nc|ENSG00000107831|P55075-2|FGF8;nc|ENSG00000107831|P55075-3|FGF8;nc|ENSG00000107831|P55075|FGF8;ENSG00000107831|ENST00000320185|FGF8 nc|ENSG00000107831|P55075-2|FGF8 nc|ENSG00000107831|P55075-2|FGF8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2652587890625 3 490.284287 1467.83103 NaN NaN NaN NaN NaN NaN NaN 72.395 1 69.084 68.584 69.584 -3.3107 0 0 0 0.22632 1 14109 14109 0.50596 0 1 43290 2442 28780 28799 42667 42667 0.11582890945578583 SRRLRTPWLLL 11 Unmodified _SRRLRTPWLLL_ 0 0 0 REV__nc|ENSG00000161091|Q6NUT3-3|MFSD12 REV__nc|ENSG00000161091|Q6NUT3-3|MFSD12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 705.9383544921875 2 705.938245 1409.86194 NaN NaN NaN NaN NaN NaN NaN 179.46 1 174.55 174.05 175.05 -4.9114 0 0 0 0.22632 1 35810 35810 0 0 1 + 43291 24122 28781 28800 42668 42668 0.17340089050480856 SRRQGKRL 8 Unmodified _SRRQGKRL_ 0 0 0 REV__DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant REV__DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.20953369140625 3 334.208941 999.604994 NaN NaN NaN NaN NaN NaN NaN 158.04 1 152.77 152.27 153.27 -5.2712 0 0 0 0.21486 1 30662 30662 1.6526 0 1 + 43292 13702 28782 28801 42669 42669 0.10517611617001421 SRRQGKRL 8 Unmodified _SRRQGKRL_ 0 0 0 REV__DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant REV__DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.2095642089844 3 334.208941 999.604994 NaN NaN NaN NaN NaN NaN NaN 158.72 1 153.45 152.95 153.95 -5.2712 0 0 0 0.21486 1 30795 30795 1.6526 0 1 + 43293 13702 28782 28801 42670 42670 0.10517611617001421 SRRQGKRL 8 Unmodified _SRRQGKRL_ 0 0 0 REV__DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant REV__DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.2098388671875 3 334.208941 999.604994 NaN NaN NaN NaN NaN NaN NaN 159.01 1 153.74 153.24 154.24 -5.2712 0 0 0 0.21486 1 30854 30854 1.6526 0 1 + 43294 13702 28782 28801 42671 42671 0.10517611617001421 SRRQHPTPT 9 Unmodified _SRRQHPTPT_ 0 0 0 REV__BMPR1B|p.I86T|1|0.12|ENSG00000138696|chr4:95115695-95115695|T/C|missense_variant REV__BMPR1B|p.I86T|1|0.12|ENSG00000138696|chr4:95115695-95115695|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.279052734375 2 540.288871 1078.56319 0.41914 0.00022646 0.24776 0.00013386 0.6669 0.00036032 540.2889454730002 101.47 0.65086 97.152 96.856 97.507 -4.3208 46 18 3 0 0 0 0.44932 1 19399 19399 22.736 22.736 1 7471300 + 43295 13199 28783 28802 42672 42672 0.02705011137800284 SRRRKRKWRRR 11 Unmodified _SRRRKRKWRRR_ 0 0 0 REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.785400390625 3 547.68048 1640.01961 0.13973 7.6525E-05 -0.74325 -0.00040706 -0.60352 -0.00033054 548.0156690553985 146.88 0.13919 141.77 141.68 141.82 -5.1108 5 3 2 0 0 0 0.89136 1 28424 28424 0 0 1 2321100 + 43296 20157 28784 28803 42673 42673 0.22520026153028994 SRRSFRWRQRW 11 Unmodified _SRRSFRWRQRW_ 0 0 0 REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.36962890625 2 810.940173 1619.86579 0.73382 0.00059508 -2.0441 -0.0016577 -1.3103 -0.0010626 810.9380732648754 174.97 0.1712 170.18 170.06 170.23 -4.7898 5 4 2 0 0 0 0.66234 1 35753 35753 0.50596 0.47975 1 12399000 + 43297 22984 28785 28804 42674 42674 0.08065571596875998 SRRSFRWRQRW 11 Unmodified _SRRSFRWRQRW_ 0 0 0 REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2738037109375 3 540.962541 1619.86579 0.39467 0.0002135 -0.38225 -0.00020679 0.012416 6.7167E-06 540.9621153413265 116.54 0.17257 111.96 111.84 112.01 -4.5815 6 4 2 0 0 0 0.89122 1 22365 22365 0.50596 0 1 1394300 + 43298 22984 28785 28804 42675 42675 0.08065571596875998 SRRTRRKTA 9 Unmodified _SRRTRRKTA_ 0 0 0 ENST00000520239.1_1_8:70041855-70042335:+|nuORF ENST00000520239.1_1_8:70041855-70042335:+|nuORF ENST00000520239.1_1_8:70041855-70042335:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.905517578125 3 377.898767 1130.67447 NaN NaN NaN NaN NaN NaN NaN 10.996 1 10.092 9.5918 10.592 -0.90401 0 0 0 0.23508 1 1423 1423 0 0 1 43299 10833 28786 28805 42676 42676 0.11436070565764567 SRRVKIVA 8 Unmodified _SRRVKIVA_ 0 0 0 REV__HSPA12A|p.P534L|1|0.58|ENSG00000165868|chr10:116675208-116675208|G/A|missense_variant REV__HSPA12A|p.P534L|1|0.58|ENSG00000165868|chr10:116675208-116675208|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2452087402344 2 464.806168 927.597784 NaN NaN NaN NaN NaN NaN NaN 131.6 1 126.96 126.46 127.46 -4.6386 0 0 0 0.2396 1 25933 25933 0.12286 0 1 + 43300 23641 28787 28806 42677 42677 0.1310887901655633 SRSHGMGRR 9 Unmodified _SRSHGMGRR_ 0 0 0 ENSG00000283267|ENST00000692316|FAM237B ENSG00000283267|ENST00000692316|FAM237B ENSG00000283267|ENST00000692316|FAM237B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.267578125 2 522.267416 1042.52028 NaN NaN NaN NaN NaN NaN NaN 16.402 1 15.18 14.68 15.68 -1.2219 0 0 0 0.19657 1 2357 2357 4.897 0 1 43301 8055 28788 28807 42678 42678 0.0007191780873654352 SRSKSERPP 9 Unmodified _SRSKSERPP_ 0 0 0 nc|ENSG00000079691|Q5VZK9-2|CARMIL1;ENSG00000079691|ENST00000329474|CARMIL1 nc|ENSG00000079691|Q5VZK9-2|CARMIL1 nc|ENSG00000079691|Q5VZK9-2|CARMIL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2786865234375 2 522.283254 1042.55196 0.21642 0.00011303 -0.18281 -9.5476E-05 0.033618 1.7558E-05 522.2832129131903 22.908 0.3128 22.908 22.713 23.026 0 20 8 3 0 0 0 0.5059 1 3851 3851 19.257 4.4187 1 3903100 43302 1599 28789 28808 42679 42679 0.03238189043690909 SRSRFLSG 8 Unmodified _SRSRFLSG_ 0 0 0 ABCA3|p.S746Pfs*15|1|0.32|ENSG00000167972|chr16:2297357-2297357|C/-|frameshift_variant;ENST00000563623.5_1_16:2339371-2378589:-|nuORF;ABCA3|p.G1334Afs*12|1|0.4|ENSG00000167972|chr16:2283220-2283220|C/-|frameshift_variant;ENSG00000167972|ENST00000301732|ABCA3;ENST00000469908.5_2_16:2429513-2445843:+|nuORF ABCA3|p.S746Pfs*15|1|0.32|ENSG00000167972|chr16:2297357-2297357|C/-|frameshift_variant ABCA3|p.S746Pfs*15|1|0.32|ENSG00000167972|chr16:2297357-2297357|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.049072265625 3 303.834881 908.482814 -0.45293 -0.00013762 0.52173 0.00015852 0.0688 2.0904E-05 303.83501578870835 23.933 0.30721 23.933 23.758 24.066 0 14 8 2 0 0 0 1.0278 1 4104 4104 0.35063 0 1 787420 43303 11 28790 28809 42680 42680 0.024911498147730526 SRSRHSSI 8 Unmodified _SRSRHSSI_ 0 0 0 nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;CDK13|p.V736Yfs*32|1|0.2|ENSG00000065883|chr7:40001877-40001877|A/-|frameshift_variant;CDK13|p.K911Nfs*13|1|0.17|ENSG00000065883|chr7:40063048-40063048|A/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.P538Lfs*72|1|0.39|ENSG00000167258|chr17:39471441-39471441|C/-|frameshift_variant;CDK12|p.P536Hfs*74|1|0.37|ENSG00000167258|chr17:39471435-39471435|C/-|frameshift_variant;CDK12|p.P526Lfs*84|1|0.16|ENSG00000167258|chr17:39471406-39471406|C/-|frameshift_variant;CDK12|p.P683Qfs*70|1|0.34|ENSG00000167258|chr17:39490669-39490669|C/-|frameshift_variant;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12 nc|ENSG00000167258|Q9NYV4-2|CDK12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.250732421875 2 465.249215 928.483876 NaN NaN NaN NaN NaN NaN NaN 94.916 1 90.725 90.225 91.225 -4.1911 0 0 0 0.18898 1 18113 18113 28.487 0 1 43304 1361;5797 28791 28810 42681 42681 0.016773641836607567 SRSRRRRRRRK 11 Unmodified _SRSRRRRRRRK_ 0 0 0 REV__ENST00000370010.6_1_6:76311739-76312006:+|nuORF REV__ENST00000370010.6_1_6:76311739-76312006:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4107666015625 2 785.496513 1568.97847 NaN NaN NaN NaN NaN NaN NaN 102.23 1 97.91 97.41 98.41 -4.3208 0 0 0 0.23698 1 19572 19572 1.3295 0 1 + 43305 20970 28792 28811 42682 42682 0.21674265113551883 SRSSSHQILCA 11 Unmodified _SRSSSHQILCA_ 0 0 0 ENST00000591223.5_1_21:47660768-47663350:+|nuORF;ENST00000590829.5_1_21:47660768-47678876:+|nuORF;ENST00000588753.1_1_21:47660768-47664506:+|nuORF;ENST00000414659.5_1_21:47650273-47669514:+|nuORF ENST00000591223.5_1_21:47660768-47663350:+|nuORF ENST00000591223.5_1_21:47660768-47663350:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 396.8647766113281 3 396.864511 1187.5717 NaN NaN NaN NaN NaN NaN NaN 9.077 1 9.077 8.577 9.577 0 0 0 0 0.23698 1 1013 1013 0 0 1 43306 9605 28793 28812 42683 42683 -0.014578030078610027 SRTKFEDKL 9 Unmodified _SRTKFEDKL_ 0 0 0 REV__ENSG00000216937|ENST00000639629|CCDC7 REV__ENSG00000216937|ENST00000639629|CCDC7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2089538574219 3 375.208384 1122.60332 NaN NaN NaN NaN NaN NaN NaN 155.77 1 155.77 155.27 156.27 0 0 0 0 0.23508 1 31232 31232 10.8 3.1906 1 + 43307 19699 28794 28813 42684 42684 0.04692513017721467 SRTKLPPP 8 Unmodified _SRTKLPPP_ 0 0 0 REV__nc|ENSG00000095539|Q9NTN9|SEMA4G REV__nc|ENSG00000095539|Q9NTN9|SEMA4G MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 448.27166748046875 2 448.271627 894.528701 NaN NaN NaN NaN NaN NaN NaN 65.11 1 61.826 61.326 62.326 -3.2832 0 0 0 0.21486 1 12233 12233 2.8892 0 1 + 43308 14610 28795 28814 42685 42685 0.07721794996984954 SRTTSRSHC 9 Unmodified _SRTTSRSHC_ 0 0 0 NTN1|p.E123Cfs*19|1|0.33|ENSG00000065320|chr17:9022738-9022747|CCGAGAACTA/-|frameshift_variant NTN1|p.E123Cfs*19|1|0.33|ENSG00000065320|chr17:9022738-9022747|CCGAGAACTA/-|frameshift_variant NTN1|p.E123Cfs*19|1|0.33|ENSG00000065320|chr17:9022738-9022747|CCGAGAACTA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 346.1800537109375 3 345.498052 1033.47233 -0.21703 -7.4984E-05 0.71044 0.00024546 0.49341 0.00017047 345.4982699304558 20.648 0.87262 19.263 19.096 19.969 -1.3847 34 24 2 0 0 0 0.79239 1 3276 3276 2.086 0 1 359480 43309 12712 28796 28815 42686 42686 -0.0430720090196246 SRTVLQTRY 9 Unmodified _SRTVLQTRY_ 0 0 0 nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM;ENST00000485078.1_1_7:141794591-141795514:+|nuORF nc|ENSG00000257335|O43451-1|MGAM nc|ENSG00000257335|O43451-1|MGAM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2121887207031 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 89.324 1 85.532 85.032 86.032 -3.7926 0 0 0 0.23508 1 17479 17479 7.1017 0.89594 1 43310 7944 28797 28816 42687 42687 0.058153351118335195 SRVFTSPSV 9 Unmodified _SRVFTSPSV_ 0 0 0 ENST00000406438.4_1_17:18226882-18227203:+|nuORF ENST00000406438.4_1_17:18226882-18227203:+|nuORF ENST00000406438.4_1_17:18226882-18227203:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2640075683594 2 490.263999 978.513445 0.080788 3.9608E-05 0.21972 0.00010772 0.3005 0.00014733 490.2641523399602 102.54 0.52681 98.359 98.027 98.554 -4.1861 21 14 2 0 0 0 0.48181 1 20105 20105 1.2148 0.83524 1 1418700 43311 9542 28798 28817 42688 42688 0.02332883409144415 SRVFTSPSV 9 Unmodified _SRVFTSPSV_ 0 0 0 ENST00000406438.4_1_17:18226882-18227203:+|nuORF ENST00000406438.4_1_17:18226882-18227203:+|nuORF ENST00000406438.4_1_17:18226882-18227203:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2646179199219 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 77.71 1 74.051 73.551 74.551 -3.6588 0 0 0 0.19704 1 14800 14800 0.40827 0.3444 1 43312 9542 28798 28817 42689 42689 0.02332883409144415 SRVNSFLP 8 Unmodified _SRVNSFLP_ 0 0 0 ENSG00000066735|ENST00000423312|KIF26A;KIF26A|p.V265Wfs*43|1|0.37|ENSG00000066735|chr14:104157805-104157805|C/-|frameshift_variant;KIF26A|p.R1269Gfs*7|1|0.38|ENSG00000066735|chr14:104176588-104176588|C/-|frameshift_variant;KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant;KIF26A|p.L1096Wfs*152|1|0.43|ENSG00000066735|chr14:104176064-104176064|G/-|frameshift_variant;KIF26A|p.G1145Afs*103|1|0.2|ENSG00000066735|chr14:104176218-104176218|G/-|frameshift_variant ENSG00000066735|ENST00000423312|KIF26A;KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2269592285156 2 460.253434 918.492316 0.2378 0.00010945 0.23876 0.00010989 0.47655 0.00021934 460.25348435073363 63.038 0.68975 59.781 59.332 60.022 -3.2567 30 19 3 0 0 0 0.64512 1 11751 11751 19.257 0 1 1241400 43313 1376;12001 28799 28818 42690 42690 0.029809181002860896 SRWDGVSI 8 Unmodified _SRWDGVSI_ 0 0 0 REV__FCGBP-ACSS2|1|fusion REV__FCGBP-ACSS2|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23492431640625 2 460.235242 918.45593 -0.080304 -3.6959E-05 0.34312 0.00015792 0.26282 0.00012096 460.23538480978965 44.307 0.83736 41.56 41.08 41.917 -2.7475 41 23 2 0 0 0 8448 1 8087 8087 6.3914 3.7484 1 1502300 + 43314 19933 28800 28819 42691 42691 -0.006559587964147795 SRYAVGVGF 9 Unmodified _SRYAVGVGF_ 0 0 0 REV__ENSG00000105255|ENST00000221856|FSD1 REV__ENSG00000105255|ENST00000221856|FSD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7367858886719 2 478.253434 954.492316 NaN NaN NaN NaN NaN NaN NaN 108.71 1 108.71 108.21 109.21 0 0 0 0 0.23508 1 21379 21379 13.906 0.86358 1 + 43315 14973 28801 28820 42692 42692 0.013249181002947807 SRYGNRAVR 9 Unmodified _SRYGNRAVR_ 0 0 0 REV__ENSG00000116191|ENST00000367635|RALGPS2 REV__ENSG00000116191|ENST00000367635|RALGPS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015075683594 3 360.200334 1077.57917 NaN NaN NaN NaN NaN NaN NaN 83.372 1 79.764 79.264 80.264 -3.6079 0 0 0 0.23508 1 16297 16297 10.8 1.2555 1 + 43316 15475 28802 28821 42693 42693 0.04348717374705302 SRYKLTRRA 9 Unmodified _SRYKLTRRA_ 0 0 0 REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3262939453125 2 575.843813 1149.67307 0.41432 0.00023858 -1.0362 -0.00059668 -0.62187 -0.0003581 575.8430798815533 155.69 1.8796 150.44 150.08 151.95 -5.2526 77 52 2 0 0 0 0.75884 1 30280 30280 3.5965 0 1 3268100 + 43317 23028 28803 28822 42694 42694 0.10422436476983421 SRYLFILKAY 10 Unmodified _SRYLFILKAY_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1;REV__nc|ENSG00000154864|Q9H5I5-4|PIEZO2 REV__ENSG00000103335|ENST00000301015|PIEZO1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2469177246094 3 425.248291 1272.72304 NaN NaN NaN NaN NaN NaN NaN 35.496 1 33.219 32.719 33.719 -2.2766 0 0 0 0.22588 1 6243 6243 5.4027 0 1 + 43318 14875;17201 28804 28823 42695 42695 0.09759126362268944 SSAARANLKAY 11 Unmodified _SSAARANLKAY_ 0 0 0 REV__ENSG00000175229|ENST00000312006|GAL3ST3 REV__ENSG00000175229|ENST00000312006|GAL3ST3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3110961914062 2 576.312012 1150.60947 0.19379 0.00011168 -0.53182 -0.00030649 -0.33803 -0.00019481 576.3117603352754 60.286 0.31969 56.972 56.731 57.05 -3.3139 12 8 2 0 0 0 0.7348 1 11199 11199 9.3831 2.0939 1 828660 + 43319 18464 28805 28824 42696 42696 0.04019031249231375 SSAARVVLHPD 11 Unmodified _SSAARVVLHPD_ 0 0 0 nc|ENSG00000127241|P48740-4|MASP1;ENSG00000127241|ENST00000296280|MASP1 nc|ENSG00000127241|P48740-4|MASP1 nc|ENSG00000127241|P48740-4|MASP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3361206054688 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 67.744 1 64.247 63.747 64.747 -3.4965 0 0 0 0.23018 1 12715 12715 8.1555 0.54658 1 43320 3467 28806 28825 42697 42697 0.04019031249231375 SSAASDCD 8 Unmodified _SSAASDCD_ 0 0 0 REV__ENSG00000258643|ENST00000678502|BCL2L2-PABPN1 REV__ENSG00000258643|ENST00000678502|BCL2L2-PABPN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.12908935546875 2 378.12925 754.243948 NaN NaN NaN NaN NaN NaN NaN 179.4 1 179.4 178.9 179.9 0 0 0 0 0.21486 1 37162 37162 0.69038 0 1 + 43321 19875 28807 28826 42698 42698 -0.14300418269544934 SSAGKGKK 8 Unmodified _SSAGKGKK_ 0 0 0 REV__CPD|p.S890T|1|0.44|ENSG00000108582|chr17:30445816-30445816|G/C|missense_variant REV__CPD|p.S890T|1|0.44|ENSG00000108582|chr17:30445816-30445816|G/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 382.2374572753906 2 381.727052 761.439552 -0.13132 -5.0129E-05 -1.0718 -0.00040913 -1.2031 -0.00045926 381.72656609110913 123.58 0.8861 123.58 123.24 124.13 0 47 24 3 0 0 0 8448 1 24345 24345 0 0 1 6753900 + 43322 13568 28808 28827 42699 42699 0.04928960037466368 SSAGKGKK 8 Unmodified _SSAGKGKK_ 0 0 0 REV__CPD|p.S890T|1|0.44|ENSG00000108582|chr17:30445816-30445816|G/C|missense_variant REV__CPD|p.S890T|1|0.44|ENSG00000108582|chr17:30445816-30445816|G/C|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 381.727052 761.439552 -0.13132 -5.0129E-05 -1.0718 -0.00040913 -1.2031 -0.00045926 381.72656609110913 123.58 0.8861 123.58 123.24 124.13 0 -0.25803 5.2134E-05 NaN 0 47 24 3 NaN NaN NaN NaN 0 NaN NaN 0 6753900 + 43323 13568 28808 28827 0.04928960037466368 SSAGKGKK 8 Unmodified _SSAGKGKK_ 0 0 0 REV__CPD|p.S890T|1|0.44|ENSG00000108582|chr17:30445816-30445816|G/C|missense_variant REV__CPD|p.S890T|1|0.44|ENSG00000108582|chr17:30445816-30445816|G/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 381.727052 761.439552 -0.17375 -6.6323E-05 -1.0966 -0.0004186 -1.2703 -0.00048492 381.7265377032516 128.48 0.64342 123.85 123.54 124.19 -4.6292 0.0069875 3.3206E-05 NaN 0 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2174800 + 43324 13568 28808 28827 0.04928960037466368 SSAGKGKK 8 Unmodified _SSAGKGKK_ 0 0 0 REV__CPD|p.S890T|1|0.44|ENSG00000108582|chr17:30445816-30445816|G/C|missense_variant REV__CPD|p.S890T|1|0.44|ENSG00000108582|chr17:30445816-30445816|G/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 381.727052 761.439552 0.11904 4.5442E-05 -1.4185 -0.00054148 -1.2995 -0.00049604 381.7264258248912 128.79 0.85295 123.97 123.52 124.37 -4.817 0.1317 -0.00021256 NaN 0 57 23 3 NaN NaN NaN NaN 0 NaN NaN 0 9892700 + 43325 13568 28808 28827 0.04928960037466368 SSAGKGKK 8 Unmodified _SSAGKGKK_ 0 0 0 REV__CPD|p.S890T|1|0.44|ENSG00000108582|chr17:30445816-30445816|G/C|missense_variant REV__CPD|p.S890T|1|0.44|ENSG00000108582|chr17:30445816-30445816|G/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 381.727052 761.439552 -0.51348 -0.00019601 -0.89806 -0.00034281 -1.4115 -0.00053882 381.7266337234035 128.7 0.76846 123.96 123.52 124.29 -4.7408 0.11934 0.00018478 NaN 0 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 4433900 + 43326 13568 28808 28827 0.04928960037466368 SSAKPSCPYC 10 Unmodified _SSAKPSCPYC_ 0 0 0 HIRA|p.R605Efs*31|1|0.26|ENSG00000100084|chr22:19361894-19361894|G/-|frameshift_variant;nc|ENSG00000100084|P54198-2|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF;ENSG00000100084|ENST00000263208|HIRA HIRA|p.R605Efs*31|1|0.26|ENSG00000100084|chr22:19361894-19361894|G/-|frameshift_variant HIRA|p.R605Efs*31|1|0.26|ENSG00000100084|chr22:19361894-19361894|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2579345703125 2 521.720252 1041.42595 -0.78337 -0.0004087 0.57016 0.00029746 -0.21321 -0.00011124 521.7205682027318 42.452 1.0083 39.802 39.321 40.329 -2.651 53 28 2 0 0 0 0.90091 1 7648 7648 1.3295 1.3295 1 4344300 43327 1927 28809 28828 42700 42700 -0.09310401848301808 SSAKQSGG 8 Unmodified _SSAKQSGG_ 0 0 0 REV__U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant REV__U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.2134704589844 2 361.177392 720.340232 NaN NaN NaN NaN NaN NaN NaN 61.944 1 61.944 61.444 62.444 0 0 0 0 0.2396 1 11884 11884 0.0082765 0 1 + 43328 17605 28810 28829 42701 42701 -0.031124826472705536 SSAKTILKY 9 Unmodified _SSAKTILKY_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.5374450683594 3 337.534209 1009.5808 0.046501 1.5696E-05 0.32717 0.00011043 0.37367 0.00012613 337.5342632924808 51.529 0.73543 48.484 48.084 48.82 -3.0453 63 20 5 0 0 0 0.25976 1 9443 9443 17.572 7.4213 1 6925700 43329 2534 28811 28830 42702 42702 0.07638913620087351 SSAKTILKY 9 Unmodified _SSAKTILKY_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.48370361328125 3 337.534209 1009.5808 -0.74644 -0.00025195 0.93294 0.0003149 0.1865 6.2952E-05 337.5345050590843 51.462 0.80581 48.41 48.027 48.833 -3.0517 56 22 3 0 0 0 0.15889 2 9428 9428;9434 24.882 20.994 1 6168600 43330 2534 28811 28830 42703;42704 42703 0.07638913620087351 SSAKTILKY 9 Unmodified _SSAKTILKY_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 337.534209 1009.5808 -0.11154 -3.765E-05 0.36977 0.00012481 0.25822 8.7158E-05 337.5342581575058 48.768 0.67261 48.768 48.382 49.055 0 0.23932 -0.00023079 NaN 22.736 45 18 3 NaN NaN NaN NaN 0 NaN NaN 0 5762300 43331 2534 28811 28830 0.07638913620087351 SSAKTILKY 9 Unmodified _SSAKTILKY_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 337.534209 1009.5808 -0.4395 -0.00014835 0.81982 0.00027672 0.38032 0.00012837 337.53443258298915 51.336 0.69022 48.453 48.141 48.831 -2.8824 -0.075567 0.00022494 NaN 22.736 51 19 3 NaN NaN NaN NaN 0 NaN NaN 0 8590500 43332 2534 28811 28830 0.07638913620087351 SSANAEESFT 10 Unmodified _SSANAEESFT_ 0 0 0 REV__BEND5|p.T278A|1|0.07|ENSG00000162373|chr1:48742685-48742685|T/C|missense_variant REV__BEND5|p.T278A|1|0.07|ENSG00000162373|chr1:48742685-48742685|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2825317382812 2 521.719818 1041.42508 0.35557 0.00018551 0.24836 0.00012957 0.60393 0.00031508 521.7199221348973 40.015 0.70726 40.015 39.644 40.352 0 32 19 2 0 0 0 0.88533 1 7499 7499 5.2969 2.0156 1 6548400 + 43333 13194 28812 28831 42705 42705 -0.09397201691990631 SSANYEKPAL 10 Unmodified _SSANYEKPAL_ 0 0 0 ENSG00000204291|ENST00000375001|COL15A1 ENSG00000204291|ENST00000375001|COL15A1 ENSG00000204291|ENST00000375001|COL15A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2761840820312 2 540.272021 1078.52949 0.23798 0.00012858 -0.042862 -2.3157E-05 0.19512 0.00010542 540.2719397391652 35.993 0.59839 33.74 33.466 34.065 -2.2527 47 16 4 0 0 0 0.57502 1 6338 6338 30.637 3.0077 1 6805500 43334 7570 28813 28832 42706 42706 -0.006634551446268233 SSAQCSATY 9 Unmodified _SSAQCSATY_ 0 0 0 ENST00000399413.3_1_17:7983135-7983387:+|nuORF ENST00000399413.3_1_17:7983135-7983387:+|nuORF ENST00000399413.3_1_17:7983135-7983387:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2398986816406 2 459.1871 916.359646 0.23756 0.00010909 1.1209 0.0005147 1.3585 0.00062378 459.18754882414765 34.462 1.9764 34.462 33.439 35.416 0 114 56 3 0 0 0 0.66537 1 6230 6230 8.5933 0.68312 1 2716000 43335 9496 28814 28833 42707 42707 -0.10187894418697852 SSAQCSATY 9 Unmodified _SSAQCSATY_ 0 0 0 ENST00000399413.3_1_17:7983135-7983387:+|nuORF ENST00000399413.3_1_17:7983135-7983387:+|nuORF ENST00000399413.3_1_17:7983135-7983387:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 459.1871 916.359646 0.23756 0.00010909 1.1209 0.0005147 1.3585 0.00062378 459.18754882414765 34.462 1.9764 34.462 33.439 35.416 0 -0.13626 -0.00027817 NaN 8.5933 114 56 3 NaN NaN NaN NaN 0 NaN NaN 0 2716000 43336 9496 28814 28833 -0.10187894418697852 SSAQCSATY 9 Unmodified _SSAQCSATY_ 0 0 0 ENST00000399413.3_1_17:7983135-7983387:+|nuORF ENST00000399413.3_1_17:7983135-7983387:+|nuORF ENST00000399413.3_1_17:7983135-7983387:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.1871 916.359646 -0.49022 -0.0002251 1.7246 0.0007919 1.2344 0.0005668 459.1878704494843 37.203 1.427 34.734 33.833 35.26 -2.4688 0.13588 0.00027624 NaN 8.5933 79 40 3 NaN NaN NaN NaN 0 NaN NaN 0 1250200 43337 9496 28814 28833 -0.10187894418697852 SSAQCSATY 9 Unmodified _SSAQCSATY_ 0 0 0 ENST00000399413.3_1_17:7983135-7983387:+|nuORF ENST00000399413.3_1_17:7983135-7983387:+|nuORF ENST00000399413.3_1_17:7983135-7983387:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.1871 916.359646 0.055696 2.5575E-05 1.5959 0.00073284 1.6516 0.00075841 459.1878098933735 37.017 2.1001 34.669 33.478 35.578 -2.3479 0.070199 0.00015811 NaN 8.5933 102 60 2 NaN NaN NaN NaN 0 NaN NaN 0 2324000 43338 9496 28814 28833 -0.10187894418697852 SSAQCSATY 9 Unmodified _SSAQCSATY_ 0 0 0 ENST00000399413.3_1_17:7983135-7983387:+|nuORF ENST00000399413.3_1_17:7983135-7983387:+|nuORF ENST00000399413.3_1_17:7983135-7983387:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.1871 916.359646 0.2432 0.00011167 1.0804 0.00049609 1.3236 0.00060776 459.18757356747705 36.866 1.5083 34.529 33.889 35.398 -2.3375 -0.069824 -0.00031539 NaN 8.5933 92 42 3 NaN NaN NaN NaN 0 NaN NaN 0 1660900 43339 9496 28814 28833 -0.10187894418697852 SSCCCCCCSSR 11 Unmodified _SSCCCCCCSSR_ 0 0 0 ENSG00000080709|ENST00000673685|KCNN2 ENSG00000080709|ENST00000673685|KCNN2 ENSG00000080709|ENST00000673685|KCNN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2044982910156 3 381.105575 1140.2949 NaN NaN NaN NaN NaN NaN NaN 6.1701 1 5.1612 4.6612 5.6612 -1.0089 0 0 0 0.23698 1 367 367 0 0 1 43340 1617 28815 28834 42708 42708 -0.2696394314616555 SSCCCCCCSSR 11 Unmodified _SSCCCCCCSSR_ 0 0 0 ENSG00000080709|ENST00000673685|KCNN2 ENSG00000080709|ENST00000673685|KCNN2 ENSG00000080709|ENST00000673685|KCNN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.13616943359375 3 381.105575 1140.2949 NaN NaN NaN NaN NaN NaN NaN 6.7367 1 5.7219 5.2219 6.2219 -1.0148 0 0 0 0.23698 1 473 473 0 0 1 43341 1617 28815 28834 42709 42709 -0.2696394314616555 SSCCCCCCSSR 11 Unmodified _SSCCCCCCSSR_ 0 0 0 ENSG00000080709|ENST00000673685|KCNN2 ENSG00000080709|ENST00000673685|KCNN2 ENSG00000080709|ENST00000673685|KCNN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2103576660156 3 381.105575 1140.2949 NaN NaN NaN NaN NaN NaN NaN 16.589 1 15.235 14.735 15.735 -1.3534 0 0 0 0.22632 1 2360 2360 0 0 1 43342 1617 28815 28834 42710 42710 -0.2696394314616555 SSCCCCCL 8 Unmodified _SSCCCCCL_ 0 0 0 REV__ENSG00000180758|ENST00000377411|GPR157 REV__ENSG00000180758|ENST00000377411|GPR157 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.10791015625 2 411.10958 820.204608 NaN NaN NaN NaN NaN NaN NaN 25.649 1 23.796 23.296 24.296 -1.8534 0 0 0 0.21486 1 4226 4226 0.69038 0.69038 1 + 43343 18697 28816 28835 42711 42711 -0.2126862441227786 SSCCGTCCCP 10 Unmodified _SSCCGTCCCP_ 0 0 0 ENST00000541550.5_1_10:75936529-75936631:+|nuORF ENST00000541550.5_1_10:75936529-75936631:+|nuORF ENST00000541550.5_1_10:75936529-75936631:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 964.2503051757812 1 963.249726 962.24245 0.54441 0.0005244 -0.017253 -1.6619E-05 0.52716 0.00050779 963.2504436746686 179.45 0.55096 179.45 179.22 179.78 0 19 15 2 0 0 0 0.53453 2 37157 37157;37177 0 0 1 127320 43344 11078 28817 28836 42712;42713 42712 -0.24018158217472774 SSCCHPCH 8 Unmodified _SSCCHPCH_ 0 0 0 REV__ENST00000396504.6_1_22:41923998-41924697:-|nuORF REV__ENST00000396504.6_1_22:41923998-41924697:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23358154296875 2 437.143658 872.272763 NaN NaN NaN NaN NaN NaN NaN 15.865 1 14.643 14.143 15.143 -1.2219 0 0 0 0.21486 1 2250 2250 0.79363 0 1 + 43345 21280 28818 28837 42714 42714 -0.16848295445754502 SSCDETESDY 10 Unmodified _SSCDETESDY_ 0 0 0 CHD1|p.R211Efs*4|1|0.2|ENSG00000153922|chr5:98901040-98901041|-/T|frameshift_variant;CHD1|p.K210Rfs*39|2|0.17|ENSG00000153922|chr5:98901041-98901041|T/-|frameshift_variant;CHD1|p.K432Vfs*6|1|0.22|ENSG00000153922|chr5:98898326-98898327|TT/-|frameshift_variant;CHD1|p.A616Gfs*13|1|0.09|ENSG00000153922|chr5:98893560-98893561|-/GATATTATGTTTAGTGGGAATAAACC|frameshift_variant;CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant;CHD1|p.E1321Rfs*17|1|0.48|ENSG00000153922|chr5:98870704-98870705|-/T|frameshift_variant;CHD1|p.E1321Kfs*22|3|0.3|ENSG00000153922|chr5:98870705-98870705|T/-|frameshift_variant;nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1 CHD1|p.R211Efs*4|1|0.2|ENSG00000153922|chr5:98901040-98901041|-/T|frameshift_variant CHD1|p.R211Efs*4|1|0.2|ENSG00000153922|chr5:98901040-98901041|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 568.1900634765625 2 568.190233 1134.36591 NaN NaN NaN NaN NaN NaN NaN 5.8818 1 4.8729 4.3729 5.3729 -1.0089 0 0 0 0.22588 1 320 320 0.40072 0.40072 1 43346 510 28819 28838 42715 42715 -0.195894657684903 SSCPGDPS 8 Unmodified _SSCPGDPS_ 0 0 0 ENST00000203630.9_2_12:6862424-6862610:-|nuORF ENST00000203630.9_2_12:6862424-6862610:-|nuORF ENST00000203630.9_2_12:6862424-6862610:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2076110839844 2 375.142161 748.269769 NaN NaN NaN NaN NaN NaN NaN 110.17 1 105.79 105.29 106.29 -4.3776 0 0 0 0.21486 1 21713 21713 2.5775 0 1 43347 8089 28820 28839 42716 42716 -0.1144352402725417 SSCSGCTACDL 11 Unmodified _SSCSGCTACDL_ 0 0 0 REV__CD2AP-MDFI|1|fusion REV__CD2AP-MDFI|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.684326171875 2 523.68301 1045.35147 NaN NaN NaN NaN NaN NaN NaN 69.164 1 65.984 65.484 66.484 -3.1796 0 0 0 0.23634 1 13446 13446 3.2813 0.70383 1 + 43348 13333 28821 28840 42717 42717 -0.16939532721971773 SSDDDDDDDDD 11 Unmodified _SSDDDDDDDDD_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 410.113037109375 3 410.112979 1227.31711 NaN NaN NaN NaN NaN NaN NaN 148.54 1 148.54 148.04 149.04 0 0 0 0 0.23698 1 29730 29730 0 0 1 43349 12546 28822 28841 42718 42718 -0.28745707594544 SSDDDDDDDDD 11 Unmodified _SSDDDDDDDDD_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 410.1133117675781 3 410.112979 1227.31711 NaN NaN NaN NaN NaN NaN NaN 161.31 1 161.31 160.81 161.81 0 0 0 0 0.23698 1 32399 32399 0 0 1 43350 12546 28822 28841 42719 42719 -0.28745707594544 SSDDDDDDDDD 11 Unmodified _SSDDDDDDDDD_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.1128234863281 3 410.112979 1227.31711 NaN NaN NaN NaN NaN NaN NaN 47.337 1 44.468 43.968 44.968 -2.869 0 0 0 0.23698 1 8942 8942 0 0 1 43351 12546 28822 28841 42720 42720 -0.28745707594544 SSDDDDDDDDD 11 Unmodified _SSDDDDDDDDD_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 410.10919189453125 3 410.112979 1227.31711 NaN NaN NaN NaN NaN NaN NaN 30.208 1 28.315 27.815 28.815 -1.8928 0 0 0 0.23698 1 5167 5167 0 0 1 43352 12546 28822 28841 42721 42721 -0.28745707594544 SSDDDDDDDDD 11 Unmodified _SSDDDDDDDDD_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 410.1132507324219 3 410.112979 1227.31711 NaN NaN NaN NaN NaN NaN NaN 148.78 1 143.62 143.12 144.12 -5.1557 0 0 0 0.23698 1 28809 28809 0 0 1 43353 12546 28822 28841 42722 42722 -0.28745707594544 SSDDDDDDDDE 11 Unmodified _SSDDDDDDDDE_ 0 0 0 REV__ENSG00000118096|ENST00000264021|IFT46 REV__ENSG00000118096|ENST00000264021|IFT46 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 621.6265258789062 2 621.673656 1241.33276 NaN NaN NaN NaN NaN NaN NaN 165.5 1 165.5 165 166 0 0 0 0 0.22632 1 33597 33597 0 0 1 + 43354 15539 28823 28842 42723 42723 -0.27825421077500323 SSDDGRVLI 9 Unmodified _SSDDGRVLI_ 0 0 0 nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5 nc|ENSG00000139990|Q96JK2-2|DCAF5 nc|ENSG00000139990|Q96JK2-2|DCAF5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2510681152344 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 69.423 1 65.886 65.386 66.386 -3.5362 0 0 0 0.12773 1 13070 13070 33.445 4.9581 1 43355 4276 28824 28843 42724 42724 0.005799891668516466 SSDDGRVLI 9 Unmodified _SSDDGRVLI_ 0 0 0 nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5 nc|ENSG00000139990|Q96JK2-2|DCAF5 nc|ENSG00000139990|Q96JK2-2|DCAF5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2518005371094 2 481.251089 960.487624 0.27244 0.00013111 -0.26644 -0.00012823 0.0059994 2.8872E-06 481.25129092979915 69.299 0.24456 65.908 65.736 65.981 -3.3903 8 6 2 0 0 0 0.26842 1 13086 13086 33.445 4.9581 1 777080 43356 4276 28824 28843 42725 42725 0.005799891668516466 SSDDKDAFY 9 Unmodified _SSDDKDAFY_ 0 0 0 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6764526367188 2 524.216911 1046.41927 -0.49408 -0.00025901 0.65665 0.00034423 0.16257 8.5223E-05 524.2171540752212 48.309 0.4938 45.367 45.144 45.638 -2.9421 16 13 2 0 0 0 0.70212 1 8835 8835 16.149 3.1066 1 1106000 43357 2882 28825 28844 42726 42726 -0.10208300203657927 SSDDSKLEY 9 Unmodified _SSDDSKLEY_ 0 0 0 ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2730102539062 2 522.230019 1042.44548 NaN NaN NaN NaN NaN NaN NaN 38.594 1 38.594 38.094 39.094 0 0 0 0 0.19512 1 7158 7158 12.241 6.0349 1 43358 31 28826 28845 42727 42727 -0.07404031032183411 SSDDSKLEY 9 Unmodified _SSDDSKLEY_ 0 0 0 ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2720336914062 2 522.230019 1042.44548 -0.50883 -0.00026573 -0.016663 -8.702E-06 -0.5255 -0.00027443 522.230183844502 39.248 1.2966 36.699 36.088 37.385 -2.5491 110 31 4 0 0 0 1.6991E-06 2 7245 7245;7350 76.825 60.55 1 367660000 43359 31 28826 28845 42728;42729 42728 -0.07404031032183411 SSDDSKLEY 9 Unmodified _SSDDSKLEY_ 0 0 0 ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2765502929688 2 522.230019 1042.44548 -0.67287 -0.00035139 0.06279 3.2791E-05 -0.61008 -0.0003186 522.2302210489624 39.133 1.613 36.691 36.054 37.667 -2.4419 146 45 5 0 0 0 8.7315E-17 1 6939 6939 168.54 107.18 1 334280000 43360 31 28826 28845 42730 42730 -0.07404031032183411 SSDDSKLEY 9 Unmodified _SSDDSKLEY_ 0 0 0 ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6918334960938 2 522.230019 1042.44548 0.2038 0.00010643 -0.82764 -0.00043222 -0.62384 -0.00032579 522.2297620102274 39.11 1.7472 36.705 36.058 37.805 -2.4049 152 49 5 0 0 0 0.084379 6 6957 6957;7050;7053;7144;7152;7155 55.235 35.745 1 272820000 43361 31 28826 28845 42731;42732;42733;42734;42735;42736 42731 -0.07404031032183411 SSDEEACPED 10 Unmodified _SSDEEACPED_ 0 0 0 ENSG00000162063|ENST00000397066|CCNF ENSG00000162063|ENST00000397066|CCNF ENSG00000162063|ENST00000397066|CCNF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2794799804688 2 541.184951 1080.35535 NaN NaN NaN NaN NaN NaN NaN 40.497 1 40.497 39.997 40.997 0 0 0 0 2.8426 1 7532 7532 0.043787 0 1 43362 5311 28827 28846 42737 42737 -0.18161448422915782 SSDEETQSLS 10 Unmodified _SSDEETQSLS_ 0 0 0 ENST00000503088.1_1_5:38490841-38530749:-|nuORF;LIFR|p.F700Sfs*16|1|0.11|ENSG00000113594|chr5:38490258-38490258|A/-|frameshift_variant;ENSG00000113594|ENST00000453190|LIFR ENST00000503088.1_1_5:38490841-38530749:-|nuORF ENST00000503088.1_1_5:38490841-38530749:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2823486328125 2 541.72784 1081.44113 0.37144 0.00020122 -3.1687 -0.0017166 -2.7973 -0.0015154 541.7259093339392 36.783 0.14659 36.783 36.704 36.851 0 5 3 2 0 0 0 0.83242 1 6787 6787 10.074 1.3285 1 399060 43363 2752 28828 28847 42738 42738 -0.0963354024572709 SSDFDPLVY 9 Unmodified _SSDFDPLVY_ 0 0 0 nc|ENSG00000108375|Q68DV7-4|RNF43;RNF43|p.G659Vfs*41|19|0.36|ENSG00000108375|chr17:58357800-58357800|C/-|frameshift_variant;RNF43|p.A629Pfs*71|1|0.56|ENSG00000108375|chr17:58357891-58357891|C/-|frameshift_variant;nc|ENSG00000108375|Q68DV7-2|RNF43;ENSG00000108375|ENST00000407977|RNF43;chr17:58415759-58417017|443|15.45|0.8|4.27|-|ENST00000577716|RNF43,RNF43;nc|ENSG00000108375|Q68DV7-3|RNF43 nc|ENSG00000108375|Q68DV7-4|RNF43 nc|ENSG00000108375|Q68DV7-4|RNF43 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2613525390625 2 521.740022 1041.46549 -0.11792 -6.1522E-05 1.0667 0.00055655 0.9488 0.00049503 521.740302319785 151.03 0.38536 146.28 146.18 146.57 -4.7523 14 10 2 0 0 0 0.28819 1 30052 30052 32.305 16.458 1 2133300 43364 12279 28829 28848 42739 42739 -0.05358235301559944 SSDGKKHIG 9 Unmodified _SSDGKKHIG_ 0 0 0 REV__nc|ENSG00000167526|P26373-2|RPL13 REV__nc|ENSG00000167526|P26373-2|RPL13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16485595703125 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 122.47 1 122.47 121.97 122.97 0 0 0 0 0.19622 1 24140 24140 0.96228 0.96228 1 + 43365 24152 28830 28849 42740 42740 0.010754262322734576 SSDGKKHIG 9 Unmodified _SSDGKKHIG_ 0 0 0 REV__nc|ENSG00000167526|P26373-2|RPL13 REV__nc|ENSG00000167526|P26373-2|RPL13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1644592285156 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 138.89 1 134.04 133.54 134.54 -4.8492 0 0 0 0.19622 1 26773 26773 0.96228 0.96228 1 + 43366 24152 28830 28849 42741 42741 0.010754262322734576 SSDGKSYV 8 Unmodified _SSDGKSYV_ 0 0 0 nc|ENSG00000188394|Q9Y3P9-3|RABGAP1;nc|ENSG00000188394|Q9Y3P9-2|RABGAP1;ENSG00000011454|ENST00000373647|RABGAP1 nc|ENSG00000188394|Q9Y3P9-3|RABGAP1 nc|ENSG00000188394|Q9Y3P9-3|RABGAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.392333984375 1 842.389039 841.381762 0.46145 0.00038872 -0.5766 -0.00048572 -0.11515 -9.7E-05 842.3887709636614 85.561 0.485 81.611 81.422 81.907 -3.9503 19 13 2 0 0 0 0.56049 1 16281 16281 24.674 0 1 1740700 43367 1080 28831 28850 42742 42742 -0.0452734667861705 SSDGLRRE 8 Unmodified _SSDGLRRE_ 0 0 0 REV__nc|ENSG00000107581|Q14152-2|EIF3A REV__nc|ENSG00000107581|Q14152-2|EIF3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.235107421875 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 118.72 1 118.72 118.22 119.22 0 0 0 0 0.21486 1 23383 23383 11.64 0.81637 1 + 43368 15085 28832 28851 42743 42743 -0.010580482901445976 SSDGSILCLKA 11 Unmodified _SSDGSILCLKA_ 0 0 0 REV__COL28A1|p.R200C|1|0.43|ENSG00000215018|chr7:7531431-7531431|G/A|missense_variant REV__COL28A1|p.R200C|1|0.43|ENSG00000215018|chr7:7531431-7531431|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7845458984375 2 547.281531 1092.54851 0.057189 3.1298E-05 -0.040007 -2.1895E-05 0.017182 9.4032E-06 547.7840574427826 49.859 0.17662 46.86 46.727 46.904 -2.999 6 4 2 0 0 0 0.60113 1 9116 9116 0.0059557 0 1 705380 + 43369 13486 28833 28852 42744 42744 0.005937581547641457 SSDIDKLQY 9 Unmodified _SSDIDKLQY_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 535.2871704101562 2 534.764029 1067.5135 0.55266 0.00029554 -0.82221 -0.00043969 -0.26955 -0.00014415 534.7635521969447 73.3 0.70717 69.624 69.26 69.967 -3.6764 49 19 3 0 0 0 0.036303 1 13818 13818 67.187 52.23 1 11543000 43370 1659 28834 28853 42745 42745 -0.017551613814930533 SSDIDKLQY 9 Unmodified _SSDIDKLQY_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 534.764029 1067.5135 -0.11246 -6.0142E-05 -0.19356 -0.00010351 -0.30602 -0.00016365 534.7640074287698 69.616 0.744 69.616 69.214 69.958 0 -0.049634 0.00039218 NaN 67.187 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6204000 43371 1659 28834 28853 -0.017551613814930533 SSDIDKLQY 9 Unmodified _SSDIDKLQY_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 534.764029 1067.5135 -0.0091429 -4.8893E-06 -0.44898 -0.0002401 -0.45812 -0.00024499 534.763694044904 73.009 0.82503 69.698 69.349 70.174 -3.3107 0.032454 0.000119 NaN 67.187 53 22 3 NaN NaN NaN NaN 0 NaN NaN 0 11873000 43372 1659 28834 28853 -0.017551613814930533 SSDIDKLQY 9 Unmodified _SSDIDKLQY_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 534.764029 1067.5135 0.43032 0.00023012 -0.75931 -0.00040605 -0.32898 -0.00017593 534.7635916487131 73.263 0.79985 69.724 69.339 70.138 -3.5385 0.058948 -0.0002129 NaN 67.187 61 22 3 NaN NaN NaN NaN 0 NaN NaN 0 9424500 43373 1659 28834 28853 -0.017551613814930533 SSDLPERL 8 Unmodified _SSDLPERL_ 0 0 0 ENSG00000113812|ENST00000335754|ACTR8;nc|ENSG00000113812|Q9H981-2|ACTR8;ENST00000495993.1_1_3:53905208-53907064:-|nuORF;nc|ENSG00000113812|Q9H981-3|ACTR8 ENSG00000113812|ENST00000335754|ACTR8 ENSG00000113812|ENST00000335754|ACTR8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23822021484375 2 458.740357 915.46616 -0.082793 -3.798E-05 -0.15128 -6.94E-05 -0.23408 -0.00010738 458.74029385541513 67.703 0.34855 67.703 67.477 67.826 0 14 9 2 0 0 0 0.88839 1 13087 13087 29.082 8.628 1 983850 43374 2765 28835 28854 42746 42746 0.005046041381433497 SSDLTQGT 8 Unmodified _SSDLTQGT_ 0 0 0 REV__nc|ENSG00000187258|Q6W5P4-9|NPSR1 REV__nc|ENSG00000187258|Q6W5P4-9|NPSR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.6986999511719 2 404.68779 807.361027 -0.3296 -0.00013338 -1.84 -0.00074461 -2.1695 -0.00087799 404.6860626287433 65.053 1.0432 65.053 64.751 65.794 0 72 29 3 0 0 0 8448 1 12537 12537 1.7423 0 1 9528400 + 43375 19083 28836 28855 42747 42747 -0.0503593705827825 SSDPAKLVV 9 Unmodified _SSDPAKLVV_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2322692871094 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 69.927 1 69.927 69.427 70.427 0 0 0 0 0.23508 1 13539 13539 7.2892 0.93513 1 + 43376 14106;24761 28837 28856 42748 42748 0.04662365177614447 SSDPAKLVV 9 Unmodified _SSDPAKLVV_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2310485839844 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 73.173 1 69.862 69.362 70.362 -3.3107 0 0 0 0.13613 1 14263 14263 32.305 11.852 1 + 43377 14106;24761 28837 28856 42749 42749 0.04662365177614447 SSDPDPAAY 9 Unmodified _SSDPDPAAY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 923.3817749023438 1 922.378868 921.371591 0.0066483 6.1322E-06 0.3409 0.00031444 0.34755 0.00032057 922.3791379301317 41.956 0.86756 39.237 38.829 39.697 -2.7191 42 24 2 0 0 0 0.38188 1 7789 7789 26.884 11.036 1 2139100 43378 3187 28838 28857 42750 42750 -0.09223954403864809 SSDPDPAAY 9 Unmodified _SSDPDPAAY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 922.378868 921.371591 0.65494 0.00060411 -0.33532 -0.00030929 0.31963 0.00029482 922.3785540735663 39.202 1.0773 39.202 38.675 39.752 0 -0.050088 -0.00034779 NaN 26.884 49 30 2 NaN NaN NaN NaN 0 NaN NaN 0 2290700 43379 3187 28838 28857 -0.09223954403864809 SSDPDPAAY 9 Unmodified _SSDPDPAAY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 922.378868 921.371591 0.17466 0.0001611 0.20221 0.00018652 0.37687 0.00034762 922.3789262832987 42.073 0.77802 39.422 38.829 39.607 -2.651 0.16989 0.00014802 NaN 26.884 40 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1613200 43380 3187 28838 28857 -0.09223954403864809 SSDPDPAAY 9 Unmodified _SSDPDPAAY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 922.378868 921.371591 0.16847 0.00015539 0.025064 2.3119E-05 0.19353 0.00017851 922.3788944013127 41.754 1.0134 39.148 38.737 39.75 -2.606 -0.10475 -1.5381E-05 NaN 26.884 45 28 2 NaN NaN NaN NaN 0 NaN NaN 0 1459600 43381 3187 28838 28857 -0.09223954403864809 SSDPLRVRL 9 Unmodified _SSDPLRVRL_ 0 0 0 ENSG00000135547|ENST00000368364|HEY2 ENSG00000135547|ENST00000368364|HEY2 ENSG00000135547|ENST00000368364|HEY2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2777099609375 2 521.803823 1041.59309 -0.5159 -0.0002692 0.17077 8.9107E-05 -0.34514 -0.00018009 521.8041867621263 39.395 0.87986 36.846 36.431 37.311 -2.5491 66 24 4 0 0 0 0.65155 1 7374 7374 21.747 10.106 1 35526000 43382 3935 28839 28858 42751 42751 0.073959500831279 SSDPLRVRL 9 Unmodified _SSDPLRVRL_ 0 0 0 ENSG00000135547|ENST00000368364|HEY2 ENSG00000135547|ENST00000368364|HEY2 ENSG00000135547|ENST00000368364|HEY2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.803823 1041.59309 -0.69195 -0.00036106 0.33979 0.0001773 -0.35216 -0.00018376 521.8041962379505 39.343 0.83832 36.901 36.513 37.352 -2.4419 0.036104 0.00055754 NaN 21.747 72 23 5 NaN NaN NaN NaN 0 NaN NaN 0 33613000 43383 3935 28839 28858 0.073959500831279 SSDPLTQTL 9 Unmodified _SSDPLTQTL_ 0 0 0 REV__FDXACB1|p.E429D|1|0.38|ENSG00000255561|chr11:111875510-111875510|C/A|missense_variant REV__FDXACB1|p.E429D|1|0.38|ENSG00000255561|chr11:111875510-111875510|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2444152832031 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 66.252 1 66.252 65.752 66.752 0 0 0 0 0.18064 1 12791 12791 26.268 0 1 + 43384 23533 28840 28859 42752 42752 -0.0054283292729451205 SSDPNPDPS 9 Unmodified _SSDPNPDPS_ 0 0 0 REV__ENSG00000283697|ENST00000431993|HSFX3 REV__ENSG00000283697|ENST00000431993|HSFX3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2260437011719 2 458.188154 914.361755 NaN NaN NaN NaN NaN NaN NaN 73.229 1 69.552 69.052 70.052 -3.6764 0 0 0 0.18525 1 13838 13838 0.12781 0 1 + 43385 19958 28841 28860 42753 42753 -0.09885142409234504 SSDPNPDPS 9 Unmodified _SSDPNPDPS_ 0 0 0 REV__ENSG00000283697|ENST00000431993|HSFX3 REV__ENSG00000283697|ENST00000431993|HSFX3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2296447753906 2 458.188154 914.361755 NaN NaN NaN NaN NaN NaN NaN 73.152 1 69.613 69.113 70.113 -3.5385 0 0 0 0.22251 1 13880 13880 16.942 2.104 1 + 43386 19958 28841 28860 42754 42754 -0.09885142409234504 SSDPNPDPS 9 Unmodified _SSDPNPDPS_ 0 0 0 REV__ENSG00000283697|ENST00000431993|HSFX3 REV__ENSG00000283697|ENST00000431993|HSFX3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2203369140625 2 458.188154 914.361755 NaN NaN NaN NaN NaN NaN NaN 73.217 1 69.678 69.178 70.178 -3.5385 0 0 0 0.20628 1 13893 13893 21.747 3.6117 1 + 43387 19958 28841 28860 42755 42755 -0.09885142409234504 SSDRRVYDRR 10 Unmodified _SSDRRVYDRR_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;nc|ENSG00000176444|P49760-2|CLK2;ENST00000476983.5_1_1:155238132-155243105:-|nuORF nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21954345703125 3 437.228841 1308.66469 NaN NaN NaN NaN NaN NaN NaN 69.677 1 69.677 69.177 70.177 0 0 0 0 2.8426 1 13489 13489 0.013265 0 1 43388 6468 28842 28861 42756 42756 0.022708377696972093 SSDSCCCCCC 10 Unmodified _SSDSCCCCCC_ 0 0 0 REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 507.1004943847656 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 8.2633 1 8.2633 7.7633 8.7633 0 0 0 0 0.22588 1 846 846 0 0 1 + 43389 22772 28843 28862 42757 42757 -0.3169069871149759 SSDSCCCCCC 10 Unmodified _SSDSCCCCCC_ 0 0 0 REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 507.2368469238281 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 130.58 1 130.58 130.08 131.08 0 0 0 0 2.8426 1 25812 25812 0 0 1 + 43390 22772 28843 28862 42758 42758 -0.3169069871149759 SSDSCCCCCC 10 Unmodified _SSDSCCCCCC_ 0 0 0 REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.10174560546875 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 7.5913 1 6.9122 6.4122 7.4122 -0.67913 0 0 0 0.22588 1 705 705 0 0 1 + 43391 22772 28843 28862 42759 42759 -0.3169069871149759 SSDSCCCCCC 10 Unmodified _SSDSCCCCCC_ 0 0 0 REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.1008605957031 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 8.8573 1 8.0631 7.5631 8.5631 -0.79424 0 0 0 0.22588 1 968 968 0 0 1 + 43392 22772 28843 28862 42760 42760 -0.3169069871149759 SSDSCCCCCC 10 Unmodified _SSDSCCCCCC_ 0 0 0 REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 507.1022033691406 2 507.101626 1012.1887 NaN NaN NaN NaN NaN NaN NaN 179.78 1 174.99 174.49 175.49 -4.7898 0 0 0 0.22588 1 36779 36779 0 0 1 + 43393 22772 28843 28862 42761 42761 -0.3169069871149759 SSDSDEMDY 9 Unmodified _SSDSDEMDY_ 0 0 0 nc|ENSG00000074356|Q53F19-2|NCBP3;ENSG00000074356|ENST00000389005|NCBP3 nc|ENSG00000074356|Q53F19-2|NCBP3 nc|ENSG00000074356|Q53F19-2|NCBP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.09381103515625 3 350.118572 1047.33389 NaN NaN NaN NaN NaN NaN NaN 7.956 1 6.9412 6.4412 7.4412 -1.0148 0 0 0 0.23508 1 705 705 0.23584 0 1 43394 1497 28844 28863 42762 42762 -0.1878883345164013 SSDSGFSNY 9 Unmodified _SSDSGFSNY_ 0 0 0 ENSG00000185000|ENST00000528718|DGAT1;ENST00000525371.1_1_8:145542526-145550314:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF ENSG00000185000|ENST00000528718|DGAT1 ENSG00000185000|ENST00000528718|DGAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7652893066406 2 482.188154 962.361755 0.26099 0.00012585 -0.12555 -6.0538E-05 0.13544 6.5309E-05 482.1880539586593 49.269 1.0426 49.269 48.915 49.958 0 50 29 2 0 0 0 0.11032 1 9335 9335 52.268 32.829 1 2148900 43395 6951 28845 28864 42763 42763 -0.12093142409230495 SSDSGFSNY 9 Unmodified _SSDSGFSNY_ 0 0 0 ENSG00000185000|ENST00000528718|DGAT1;ENST00000525371.1_1_8:145542526-145550314:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF ENSG00000185000|ENST00000528718|DGAT1 ENSG00000185000|ENST00000528718|DGAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78363037109375 2 482.188154 962.361755 -0.14194 -6.8441E-05 0.29411 0.00014182 0.15217 7.3375E-05 482.1882172633209 52.305 1.1443 49.423 49.07 50.214 -2.8824 58 32 2 0 0 0 0.042631 1 10030 10030 74.423 49.749 1 3773800 43396 6951 28845 28864 42764 42764 -0.12093142409230495 SSDSGFSNY 9 Unmodified _SSDSGFSNY_ 0 0 0 ENSG00000185000|ENST00000528718|DGAT1;ENST00000525371.1_1_8:145542526-145550314:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF ENSG00000185000|ENST00000528718|DGAT1 ENSG00000185000|ENST00000528718|DGAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76580810546875 2 482.188154 962.361755 0.091548 4.4143E-05 -0.0024063 -1.1603E-06 0.089141 4.2983E-05 482.1881050568938 52.517 1.2953 49.429 48.952 50.248 -3.0876 71 36 3 0 0 0 0.057505 1 9690 9690 68.081 29.93 1 2999100 43397 6951 28845 28864 42765 42765 -0.12093142409230495 SSDSGFSNY 9 Unmodified _SSDSGFSNY_ 0 0 0 ENSG00000185000|ENST00000528718|DGAT1;ENST00000525371.1_1_8:145542526-145550314:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF ENSG00000185000|ENST00000528718|DGAT1 ENSG00000185000|ENST00000528718|DGAT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7683410644531 2 482.188154 962.361755 -0.13952 -6.7273E-05 0.44956 0.00021677 0.31004 0.0001495 482.18832941865037 52.512 1.3797 49.417 48.893 50.272 -3.0954 65 39 2 0 0 0 0.79204 1 9815 9815 11.64 6.4096 1 2276900 43398 6951 28845 28864 42766 42766 -0.12093142409230495 SSDSKIQKDS 10 Unmodified _SSDSKIQKDS_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7689819335938 2 547.769842 1093.52513 NaN NaN NaN NaN NaN NaN NaN 73.467 1 69.791 69.291 70.291 -3.6764 0 0 0 0.22583 1 13882 13882 13.906 0.86358 1 43399 1180 28846 28865 42767 42767 -0.017889643581838754 SSDSKYVG 8 Unmodified _SSDSKYVG_ 0 0 0 REV__nc|ENSG00000277399|Q6PRD1|GPR179 REV__nc|ENSG00000277399|Q6PRD1|GPR179 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3935546875 1 842.389039 841.381762 0.33879 0.00028539 0.050908 4.2884E-05 0.38969 0.00032827 842.3889367930543 85.447 0.53397 81.783 81.466 82 -3.6641 23 14 2 0 0 0 0.56049 1 16669 16669 24.674 0 1 2269600 + 43400 19942 28847 28866 42768 42768 -0.045273466786056815 SSDTSALSY 9 Unmodified _SSDTSALSY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 930.5103759765625 1 930.405083 929.397806 0.45414 0.00042253 0.1031 9.5925E-05 0.55724 0.00051846 930.4050407643175 54.738 0.70369 54.738 54.419 55.122 0 32 19 2 0 0 0 0.010349 1 10448 10448 103.75 42.391 1 2737800 43401 3187 28848 28867 42769 42769 -0.06971685232372238 SSDTSALSY 9 Unmodified _SSDTSALSY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.247802734375 2 465.70618 929.397806 0.040103 1.8676E-05 -0.068747 -3.2016E-05 -0.028644 -1.334E-05 465.70616617754365 54.82 0.9496 54.82 54.386 55.335 0 48 26 2 0 0 0 0.10777 1 10434 10434 67.344 40.46 1 4609700 43402 3187 28848 28867 42770 42770 -0.06971685232372238 SSDTSALSY 9 Unmodified _SSDTSALSY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2580261230469 2 465.70618 929.397806 -0.16501 -7.6847E-05 0.12484 5.8141E-05 -0.040167 -1.8706E-05 465.70619351626243 57.737 0.94121 54.827 54.363 55.304 -2.9105 63 26 3 0 0 0 0.14834 1 11123 11123 57.471 35.725 1 6134200 43403 3187 28848 28867 42771 42771 -0.06971685232372238 SSDTSALSY 9 Unmodified _SSDTSALSY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2493591308594 2 465.70618 929.397806 0.038139 1.7762E-05 -0.043367 -2.0196E-05 -0.005228 -2.4347E-06 465.7061147652118 58.049 0.95539 54.797 54.319 55.274 -3.2517 61 26 3 0 0 0 0.14834 1 10785 10785 57.471 25.166 1 3729200 43404 3187 28848 28867 42772 42772 -0.06971685232372238 SSDTSALSY 9 Unmodified _SSDTSALSY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2486572265625 2 465.70618 929.397806 0.076065 3.5424E-05 -0.098366 -4.581E-05 -0.022302 -1.0386E-05 465.7060946954444 58.034 1.2552 54.829 54.145 55.401 -3.2052 67 35 3 0 0 0 0.10777 1 10849 10849 67.344 51.497 1 4231000 43405 3187 28848 28867 42773 42773 -0.06971685232372238 SSDTSALSY 9 Unmodified _SSDTSALSY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 930.405083 929.397806 0.040967 3.8116E-05 0.36173 0.00033656 0.4027 0.00037467 930.4054742273706 57.742 0.70005 54.832 54.503 55.203 -2.9105 0.047156 4.0176E-05 NaN 103.75 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3360700 43406 3187 28848 28867 -0.06971685232372238 SSDTSALSY 9 Unmodified _SSDTSALSY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 930.405083 929.397806 0.3106 0.00028899 0.34964 0.0003253 0.66024 0.00061429 930.4053470831274 58.01 0.81071 54.759 54.43 55.241 -3.2517 -0.025657 2.8924E-05 NaN 103.75 37 22 3 NaN NaN NaN NaN 0 NaN NaN 0 2890800 43407 3187 28848 28867 -0.06971685232372238 SSDTSALSY 9 Unmodified _SSDTSALSY_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 930.405083 929.397806 0.21236 0.00019758 0.43737 0.00040693 0.64973 0.00060451 930.4054281492224 58.014 0.78823 54.809 54.511 55.299 -3.2052 0.024818 0.00011055 NaN 103.75 43 22 3 NaN NaN NaN NaN 0 NaN NaN 0 3120600 43408 3187 28848 28867 -0.06971685232372238 SSDVSFLIER 10 Unmodified _SSDVSFLIER_ 0 0 0 REV__ENSG00000136872|ENST00000647789|ALDOB REV__ENSG00000136872|ENST00000647789|ALDOB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.336181640625 2 576.798403 1151.58225 0.093254 5.3789E-05 -0.99311 -0.00057282 -0.89985 -0.00051903 576.7979522408863 62.211 0.28033 59.25 59.111 59.392 -2.9614 13 7 3 0 0 0 0.90091 1 11979 11979 10.074 4.3421 1 1440100 + 43409 16358 28849 28868 42774 42774 0.01252502918191567 SSDVSFLIER 10 Unmodified _SSDVSFLIER_ 0 0 0 REV__ENSG00000136872|ENST00000647789|ALDOB REV__ENSG00000136872|ENST00000647789|ALDOB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.798403 1151.58225 0.26384 0.00015218 -0.4062 -0.0002343 -0.14236 -8.2113E-05 576.7984952886852 62.77 0.2767 59.354 59.228 59.504 -3.4158 0.052189 0.00028344 NaN 10.074 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 744270 + 43410 16358 28849 28868 0.01252502918191567 SSEAHLQQY 9 Unmodified _SSEAHLQQY_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant;NRIP1|p.R281Q|1|0.17|ENSG00000180530|chr21:14967351-14967351|C/T|missense_variant ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2621459960938 2 531.74617 1061.47779 0.1332 7.0831E-05 -0.26203 -0.00013933 -0.12883 -6.8503E-05 531.7461359807256 32.861 1.0449 30.63 30.331 31.376 -2.2305 99 29 7 0 0 0 0.40602 1 6044 6044 25.399 11.493 1 185360000 43411 6679 28850 28869 42775 42775 -0.050491988385147124 SSEAHLQQY 9 Unmodified _SSEAHLQQY_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant;NRIP1|p.R281Q|1|0.17|ENSG00000180530|chr21:14967351-14967351|C/T|missense_variant ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 531.74617 1061.47779 0.1193 6.3438E-05 -0.14873 -7.9088E-05 -0.029431 -1.565E-05 531.746122802874 30.585 0.83643 30.585 30.272 31.108 0 -0.015891 0.00027136 NaN 25.399 73 23 5 NaN NaN NaN NaN 0 NaN NaN 0 137840000 43412 6679 28850 28869 -0.050491988385147124 SSEAHLQQY 9 Unmodified _SSEAHLQQY_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant;NRIP1|p.R281Q|1|0.17|ENSG00000180530|chr21:14967351-14967351|C/T|missense_variant ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 531.74617 1061.47779 0.57044 0.00030333 -0.65701 -0.00034936 -0.086574 -4.6035E-05 531.7459277975286 32.718 1.4353 30.571 30.272 31.707 -2.1468 -0.029895 -0.00026919 NaN 25.399 117 40 6 NaN NaN NaN NaN 0 NaN NaN 0 207530000 43413 6679 28850 28869 -0.050491988385147124 SSEAHLQQY 9 Unmodified _SSEAHLQQY_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant;NRIP1|p.R281Q|1|0.17|ENSG00000180530|chr21:14967351-14967351|C/T|missense_variant ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 531.74617 1061.47779 0.48565 0.00025824 -0.58234 -0.00030966 -0.096691 -5.1415E-05 531.7459956116821 32.827 1.4565 30.618 30.22 31.677 -2.2088 0.016726 -0.00018978 NaN 25.399 120 41 6 NaN NaN NaN NaN 0 NaN NaN 0 145260000 43414 6679 28850 28869 -0.050491988385147124 SSEDSEDSDFQ 11 Unmodified _SSEDSEDSDFQ_ 0 0 0 nc|ENSG00000085224|P46100-6|ATRX;nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX nc|ENSG00000085224|P46100-6|ATRX nc|ENSG00000085224|P46100-6|ATRX MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7675170898438 2 623.223119 1244.43169 0.37809 0.00023563 1.0068 0.00062745 1.3849 0.00086308 623.2238027113109 62.557 0.55376 59.188 58.997 59.551 -3.3694 26 15 2 0 0 0 0.93546 1 11707 11707 4.897 1.9018 1 2768800 43415 1675 28851 28870 42776 42776 -0.18075353321933108 SSEDTCCSY 9 Unmodified _SSEDTCCSY_ 0 0 0 REV__RTKN2|p.E182D|1|0.25|ENSG00000182010|chr10:62236206-62236206|T/G|missense_variant REV__RTKN2|p.E182D|1|0.25|ENSG00000182010|chr10:62236206-62236206|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.00579833984375 3 332.10913 993.305562 NaN NaN NaN NaN NaN NaN NaN 120.83 1 120.83 120.33 121.33 0 0 0 0 0.23508 1 23815 23815 0.23584 0 1 + 43416 24584 28852 28871 42777 42777 -0.1913585463257732 SSEEESGDGS 10 Unmodified _SSEEESGDGS_ 0 0 0 nc|ENSG00000185739|Q86TD4-1|SRL nc|ENSG00000185739|Q86TD4-1|SRL nc|ENSG00000185739|Q86TD4-1|SRL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 492.1732482910156 2 492.175441 982.336328 NaN NaN NaN NaN NaN NaN NaN 7.845 1 6.8302 6.3302 7.3302 -1.0148 0 0 0 0.22588 1 684 684 0 0 1 43417 12516 28853 28872 42778 42778 -0.15554661722296714 SSEELPLYY 9 Unmodified _SSEELPLYY_ 0 0 0 TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant;nc|ENSG00000163728|Q96N46-3|TTC14;TTC14|p.D534Gfs*2|1|0.04|ENSG00000163728|chr3:180609828-180609829|-/G|frameshift_variant;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14 TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 551.06884765625 2 550.760955 1099.50736 0.12769 7.0327E-05 0.34105 0.00018784 0.46874 0.00025817 551.2626826422704 144.45 0.86116 139.39 138.9 139.76 -5.0671 37 24 2 0 0 0 0.79204 1 27904 27904 16.942 6.1184 1 5338000 43418 5457 28854 28873 42779 42779 -0.038416796130377406 SSEELPLYY 9 Unmodified _SSEELPLYY_ 0 0 0 TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant;nc|ENSG00000163728|Q96N46-3|TTC14;TTC14|p.D534Gfs*2|1|0.04|ENSG00000163728|chr3:180609828-180609829|-/G|frameshift_variant;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14 TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 550.760955 1099.50736 0.2209 0.00012166 0.46379 0.00025544 0.68469 0.0003771 550.760944455193 144 0.55185 139.33 139.02 139.57 -4.6694 0.014075 3.522E-05 NaN 16.942 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 5289500 43419 5457 28854 28873 -0.038416796130377406 SSEELPLYY 9 Unmodified _SSEELPLYY_ 0 0 0 TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant;nc|ENSG00000163728|Q96N46-3|TTC14;TTC14|p.D534Gfs*2|1|0.04|ENSG00000163728|chr3:180609828-180609829|-/G|frameshift_variant;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14 TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 550.760955 1099.50736 0.36587 0.0002015 0.49262 0.00027131 0.85848 0.00047282 550.7609961033542 144.17 0.73434 139.22 138.81 139.55 -4.9445 -0.088027 6.6975E-05 NaN 16.942 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 6084700 43420 5457 28854 28873 -0.038416796130377406 SSEFQALGY 9 Unmodified _SSEFQALGY_ 0 0 0 ENST00000429541.6_1_11:3392284-3398995:-|nuORF;ENST00000427810.6_1_11:3392926-3398995:-|nuORF ENST00000429541.6_1_11:3392284-3398995:-|nuORF ENST00000429541.6_1_11:3392284-3398995:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 500.6728515625 2 501.232364 1000.45018 0.29612 0.00014842 0.0074234 3.7209E-06 0.30354 0.00015215 501.2323213682377 118.82 0.93362 114.21 113.67 114.6 -4.6106 61 25 3 0 0 0 0.60698 1 22817 22817 11.64 0 1 5475500 43421 9762 28855 28874 42780 42780 -0.05003102098748968 SSEFQALGY 9 Unmodified _SSEFQALGY_ 0 0 0 ENST00000429541.6_1_11:3392284-3398995:-|nuORF;ENST00000427810.6_1_11:3392926-3398995:-|nuORF ENST00000429541.6_1_11:3392284-3398995:-|nuORF ENST00000429541.6_1_11:3392284-3398995:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 501.232364 1000.45018 0.18215 9.1302E-05 0.21937 0.00010996 0.40153 0.00020126 501.2323226810218 113.8 0.87949 113.8 113.34 114.22 0 -0.28734 0.00011418 NaN 11.64 51 24 3 NaN NaN NaN NaN 0 NaN NaN 0 5485800 43422 9762 28855 28874 -0.05003102098748968 SSEFQALGY 9 Unmodified _SSEFQALGY_ 0 0 0 ENST00000429541.6_1_11:3392284-3398995:-|nuORF;ENST00000427810.6_1_11:3392926-3398995:-|nuORF ENST00000429541.6_1_11:3392284-3398995:-|nuORF ENST00000429541.6_1_11:3392284-3398995:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 501.232364 1000.45018 0.25056 0.00012559 0.1159 5.8092E-05 0.36646 0.00018368 501.2322977229741 118.65 0.97784 114.15 113.7 114.68 -4.502 0.066843 1.0454E-05 NaN 11.64 61 27 3 NaN NaN NaN NaN 0 NaN NaN 0 6144300 43423 9762 28855 28874 -0.05003102098748968 SSEFQALGY 9 Unmodified _SSEFQALGY_ 0 0 0 ENST00000429541.6_1_11:3392284-3398995:-|nuORF;ENST00000427810.6_1_11:3392926-3398995:-|nuORF ENST00000429541.6_1_11:3392284-3398995:-|nuORF ENST00000429541.6_1_11:3392284-3398995:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 501.232364 1000.45018 0.2826 0.00014165 0.075714 3.795E-05 0.35831 0.0001796 501.2323747722687 118.59 1.0237 114.18 113.64 114.66 -4.4088 0.095664 -2.983E-05 NaN 11.64 48 28 2 NaN NaN NaN NaN 0 NaN NaN 0 6329100 43424 9762 28855 28874 -0.05003102098748968 SSEKLIYS 8 Unmodified _SSEKLIYS_ 0 0 0 REV__nc|ENSG00000129675|Q15052-2|ARHGEF6 REV__nc|ENSG00000129675|Q15052-2|ARHGEF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2486572265625 2 463.745108 925.475663 0.072031 3.3404E-05 0.064231 2.9787E-05 0.13626 6.3191E-05 463.74505306808356 58.025 1.0852 54.82 54.179 55.264 -3.2052 92 30 4 0 0 0 0.64227 1 10849 10849 19.439 0 1 18564000 + 43425 15970 28856 28875 42781 42781 0.009943724236677554 SSEKVDKAQRY 11 Unmodified _SSEKVDKAQRY_ 0 0 0 ENST00000430020.5_1_3:9704013-9725062:+|nuORF;ENST00000414996.1_1_3:9710441-9730764:+|nuORF;MTMR14|p.L397*|1|0.24|ENSG00000163719|chr3:9687841-9687841|T/-|frameshift_variant;nc|ENSG00000163719|Q8NCE2-3|MTMR14;nc|ENSG00000163719|Q8NCE2-2|MTMR14;ENSG00000163719|ENST00000296003|MTMR14 ENST00000430020.5_1_3:9704013-9725062:+|nuORF ENST00000430020.5_1_3:9704013-9725062:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23095703125 3 437.561486 1309.66263 -0.78703 -0.00034438 0.73102 0.00031987 -0.056013 -2.4509E-05 437.5617537057901 14.549 0.23945 13.435 13.297 13.536 -1.1142 17 6 4 0 0 0 0.81637 1 2200 2200 31.462 21.698 1 2124100 43426 5456 28857 28876 42782 42782 0.02018364241234849 SSEKVDKAQRY 11 Unmodified _SSEKVDKAQRY_ 0 0 0 ENST00000430020.5_1_3:9704013-9725062:+|nuORF;ENST00000414996.1_1_3:9710441-9730764:+|nuORF;MTMR14|p.L397*|1|0.24|ENSG00000163719|chr3:9687841-9687841|T/-|frameshift_variant;nc|ENSG00000163719|Q8NCE2-3|MTMR14;nc|ENSG00000163719|Q8NCE2-2|MTMR14;ENSG00000163719|ENST00000296003|MTMR14 ENST00000430020.5_1_3:9704013-9725062:+|nuORF ENST00000430020.5_1_3:9704013-9725062:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2152099609375 3 437.561486 1309.66263 -1.7803 -0.00077898 1.4358 0.00062825 -0.34448 -0.00015073 437.56222510790997 14.576 0.26759 13.365 13.246 13.513 -1.2106 20 7 4 0 0 0 0.09334 1 1944 1944 72.187 49.171 1 1334500 43427 5456 28857 28876 42783 42783 0.02018364241234849 SSEKVDKAQRY 11 Unmodified _SSEKVDKAQRY_ 0 0 0 ENST00000430020.5_1_3:9704013-9725062:+|nuORF;ENST00000414996.1_1_3:9710441-9730764:+|nuORF;MTMR14|p.L397*|1|0.24|ENSG00000163719|chr3:9687841-9687841|T/-|frameshift_variant;nc|ENSG00000163719|Q8NCE2-3|MTMR14;nc|ENSG00000163719|Q8NCE2-2|MTMR14;ENSG00000163719|ENST00000296003|MTMR14 ENST00000430020.5_1_3:9704013-9725062:+|nuORF ENST00000430020.5_1_3:9704013-9725062:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 437.561486 1309.66263 0.042218 1.8473E-05 -0.056663 -2.4794E-05 -0.014445 -6.3206E-06 437.56140745395953 13.738 0.24835 13.738 13.615 13.863 0 0.21071 -0.00053905 NaN 31.462 21 6 5 NaN NaN NaN NaN 0 NaN NaN 0 4465900 43428 5456 28857 28876 0.02018364241234849 SSEKVDKAQRY 11 Unmodified _SSEKVDKAQRY_ 0 0 0 ENST00000430020.5_1_3:9704013-9725062:+|nuORF;ENST00000414996.1_1_3:9710441-9730764:+|nuORF;MTMR14|p.L397*|1|0.24|ENSG00000163719|chr3:9687841-9687841|T/-|frameshift_variant;nc|ENSG00000163719|Q8NCE2-3|MTMR14;nc|ENSG00000163719|Q8NCE2-2|MTMR14;ENSG00000163719|ENST00000296003|MTMR14 ENST00000430020.5_1_3:9704013-9725062:+|nuORF ENST00000430020.5_1_3:9704013-9725062:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 437.561486 1309.66263 -0.66909 -0.00029277 0.40068 0.00017532 -0.26841 -0.00011745 437.5617462686977 14.581 0.32002 13.408 13.21 13.53 -1.173 -0.1187 6.129E-05 NaN 31.462 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2279900 43429 5456 28857 28876 0.02018364241234849 SSELGKVRDP 10 Unmodified _SSELGKVRDP_ 0 0 0 REV__nc|ENSG00000221994|Q2M218-2|ZNF630 REV__nc|ENSG00000221994|Q2M218-2|ZNF630 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79541015625 2 544.290745 1086.56694 0.64309 0.00035003 -0.3339 -0.00018174 0.30918 0.00016829 544.2905238000177 45.387 0.49199 45.387 45.199 45.691 0 34 13 4 0 0 0 0.90091 1 8491 8491 3.2813 3.2813 1 6072300 + 43430 19712 28858 28877 42784 42784 0.027116361209891693 SSELNEEKYY 10 Unmodified _SSELNEEKYY_ 0 0 0 REV__tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1 REV__tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7667846679688 2 631.282783 1260.55101 0.73839 0.00046613 0.40802 0.00025758 1.1464 0.00072371 631.7842928307149 102.28 0.61784 98.258 97.87 98.488 -4.0212 39 17 3 0 0 0 0.79872 1 19629 19629 19.257 0 1 2374400 + 43431 25049 28859 28878 42785 42785 -0.06884114906529248 SSELTEYK 8 Unmodified _SSELTEYK_ 0 0 0 REV__ENST00000400430.6_1_13:41034522-41044285:-|nuORF REV__ENST00000400430.6_1_13:41034522-41044285:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7318115234375 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 8.5502 1 8.5502 8.0502 9.0502 0 0 0 0 0.23782 1 907 907 0.063987 0 1 + 43432 21352 28860 28879 42786 42786 -0.029665218186096354 SSENPWMTEY 10 Oxidation (M) _SSENPWM(Oxidation (M))TEY_ SSENPWM(1)TEY SSENPWM(110)TEY 0 0 1 nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF;ENSG00000154429|ENST00000284617|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7493896484375 2 630.247886 1258.48122 0.45067 0.00028404 0.001585 9.9894E-07 0.45226 0.00028503 630.2478753501274 97.436 0.69075 97.436 97.119 97.81 0 33 19 2 0 0 0 0.001747 3 19081 19037;19081;19132 114.2 92.665 1 2992000 43433 5012 28861 28880 42787;42788;42789 42788 79 -0.1376831684683566 SSENPWMTEY 10 Oxidation (M) _SSENPWM(Oxidation (M))TEY_ SSENPWM(1)TEY SSENPWM(150)TEY 0 0 1 nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF;ENSG00000154429|ENST00000284617|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7493286132812 2 630.247886 1258.48122 0.93708 0.00059059 -0.57899 -0.00036491 0.35809 0.00022568 630.2474348962252 102.27 0.72979 98.088 97.715 98.445 -4.1861 45 20 3 0 0 0 4.7187E-07 3 20078 20030;20078;20131 145.13 117.5 1 4354700 43434 5012 28861 28880 42790;42791;42792 42791 79 -0.1376831684683566 SSENPWMTEY 10 Oxidation (M) _SSENPWM(Oxidation (M))TEY_ SSENPWM(1)TEY SSENPWM(140)TEY 0 0 1 nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF;ENSG00000154429|ENST00000284617|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.75 2 630.247886 1258.48122 0.56259 0.00035457 -0.31833 -0.00020063 0.24426 0.00015394 630.247743842717 101.68 0.65166 97.361 97.021 97.673 -4.3208 38 18 3 0 0 0 3.7351E-05 2 19486 19443;19486 137.42 115.89 1 2843500 43435 5012 28861 28880 42793;42794 42794 79 -0.1376831684683566 SSENPWMTEY 10 Oxidation (M) _SSENPWM(Oxidation (M))TEY_ SSENPWM(1)TEY SSENPWM(100)TEY 0 0 1 nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF;ENSG00000154429|ENST00000284617|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7496948242188 2 630.247886 1258.48122 0.5483 0.00034556 0.1072 6.7564E-05 0.6555 0.00041313 630.247828083937 102.24 0.7556 97.916 97.64 98.396 -4.3208 46 21 3 0 0 0 0.012097 2 19607 19546;19607 103.42 87.27 1 2844800 43436 5012 28861 28880 42795;42796 42796 79 -0.1376831684683566 SSENPWMTEY 10 Oxidation (M) _SSENPWM(Oxidation (M))TEY_ SSENPWM(1)TEY SSENPWM(160)TEY 0 0 1 nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF;ENSG00000154429|ENST00000284617|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.74951171875 2 630.247886 1258.48122 0.65362 0.00041194 -0.4505 -0.00028393 0.20312 0.00012802 630.2476499809075 101.45 0.70438 97.465 96.957 97.662 -3.9895 48 19 3 0 0 0 3.7614E-11 2 19454 19454;19500 157.8 136.26 1 3066300 43437 5012 28861 28880 42797;42798 42797 79 -0.1376831684683566 SSENPWMTEY 10 Oxidation (M) _SSENPWM(Oxidation (M))TEY_ SSENPWM(1)TEY SSENPWM(110)TEY 0 0 1 nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF;ENSG00000154429|ENST00000284617|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.75 2 630.247886 1258.48122 0.71553 0.00045096 -0.36977 -0.00023304 0.34576 0.00021792 630.2476134251627 101.97 0.82265 97.953 97.598 98.42 -4.0212 53 23 3 0 0 0 0.001747 2 19610 19548;19610 114.2 92.665 1 4169800 43438 5012 28861 28880 42799;42800 42800 79 -0.1376831684683566 SSENPWMTEY 10 Unmodified _SSENPWMTEY_ 0 0 0 nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF;ENSG00000154429|ENST00000284617|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.75146484375 2 622.250428 1242.4863 0.39493 0.00024574 -0.15019 -9.3453E-05 0.24474 0.00015229 622.2503475191287 122.62 0.79438 122.62 122.17 122.96 0 50 22 3 0 0 0 6.1421E-24 7 24203 24088;24096;24116;24159;24176;24179;24203 173.69 136.67 1 8401400 43439 5012 28861 28881 42801;42802;42803;42804;42805;42806;42807 42807 -0.1252401298422683 SSENPWMTEY 10 Unmodified _SSENPWMTEY_ 0 0 0 nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF;ENSG00000154429|ENST00000284617|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7520141601562 2 622.250428 1242.4863 1.0349 0.00064394 -0.8612 -0.00053588 0.17366 0.00010806 622.2499946698316 127.87 0.92516 123.25 122.81 123.74 -4.6172 77 25 4 0 0 0 3.7096E-57 3 25206 25157;25206;25258 209.87 179.65 1 15898000 43440 5012 28861 28881 42808;42809;42810 42809 -0.1252401298422683 SSENPWMTEY 10 Unmodified _SSENPWMTEY_ 0 0 0 nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF;ENSG00000154429|ENST00000284617|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7515869140625 2 622.250428 1242.4863 0.40906 0.00025453 -0.19689 -0.00012251 0.21217 0.00013202 622.2503061610666 127.93 0.91399 123.12 122.71 123.63 -4.817 76 25 5 0 0 0 1.3874E-72 6 24554 24479;24505;24544;24545;24554;24601 225.01 190.91 1 15581000 43441 5012 28861 28881 42811;42812;42813;42814;42815;42816 42815 -0.1252401298422683 SSENPWMTEY 10 Unmodified _SSENPWMTEY_ 0 0 0 nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF;ENSG00000154429|ENST00000284617|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP nc|ENSG00000154429|Q6IQ19-2|CCSAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7705078125 2 622.250428 1242.4863 0.34875 0.00021701 -0.061816 -3.8465E-05 0.28694 0.00017855 622.2504466208644 127.82 0.95479 123.12 122.64 123.6 -4.6998 65 26 3 0 0 0 2.8286E-33 6 24595 24529;24571;24592;24595;24622;24636 187.3 158.81 1 10159000 43442 5012 28861 28881 42817;42818;42819;42820;42821;42822 42820 -0.1252401298422683 SSEPEPVVP 9 Unmodified _SSEPEPVVP_ 0 0 0 ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1593933105469 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 96.683 1 92.449 91.949 92.949 -4.2348 0 0 0 0.23508 1 18462 18462 1.1933 0 1 43443 2829 28862 28882 42823 42823 -0.017222179559894357 SSEPRPPPP 9 Unmodified _SSEPRPPPP_ 0 0 0 REV__ENST00000438423.6_1_15:57210887-57211004:+|nuORF REV__ENST00000438423.6_1_15:57210887-57211004:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78790283203125 2 482.248349 962.482145 -0.089553 -4.3187E-05 0.24913 0.00012014 0.15958 7.6957E-05 482.2484705747603 22.087 1.2621 20.633 20.245 21.507 -1.4535 64 35 2 0 0 0 0.58699 1 3484 3484 32.305 0 1 2526100 + 43444 21684 28863 28883 42824 42824 -0.0005968962494762309 SSEPRPPPP 9 Unmodified _SSEPRPPPP_ 0 0 0 REV__ENST00000438423.6_1_15:57210887-57211004:+|nuORF REV__ENST00000438423.6_1_15:57210887-57211004:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77099609375 2 482.248349 962.482145 -0.646 -0.00031153 0.65823 0.00031743 0.012224 5.8951E-06 482.2486599640695 22.403 1.3362 20.614 20.222 21.558 -1.7886 68 38 2 0 0 0 0.5059 1 3629 3629 19.257 0 1 1949400 + 43445 21684 28863 28883 42825 42825 -0.0005968962494762309 SSESAADEENL 11 Unmodified _SSESAADEENL_ 0 0 0 REV__ENST00000590599.1_1_18:77496339-77513787:+|nuORF REV__ENST00000590599.1_1_18:77496339-77513787:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3135986328125 2 576.238572 1150.46259 NaN NaN NaN NaN NaN NaN NaN 65.436 1 65.436 64.936 65.936 0 0 0 0 0.23324 1 12618 12618 5.7319 1.7875 1 + 43446 14141 28864 28884 42826 42826 -0.10662155217028157 SSESGHYYSY 10 Unmodified _SSESGHYYSY_ 0 0 0 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.259033203125 2 590.233093 1178.45163 0.50514 0.00029815 -0.10187 -6.0125E-05 0.40327 0.00023803 590.2329901206847 40.328 0.78065 40.328 39.895 40.675 0 58 21 4 0 0 0 0.087069 1 7412 7412 65.235 41.214 1 5614400 43447 6047 28865 28885 42827 42827 -0.13045512800658798 SSESGHYYSY 10 Unmodified _SSESGHYYSY_ 0 0 0 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2486572265625 2 590.233093 1178.45163 0.37978 0.00022416 0.03284 1.9383E-05 0.41262 0.00024354 590.2330134994938 43.51 0.84295 40.791 40.482 41.325 -2.7191 66 23 4 0 0 0 3.4712E-11 2 8108 8108;8244 158.2 105.93 1 13978000 43448 6047 28865 28885 42828;42829 42828 -0.13045512800658798 SSESGHYYSY 10 Unmodified _SSESGHYYSY_ 0 0 0 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2655029296875 2 590.233093 1178.45163 0.36869 0.00021761 0.010288 6.072E-06 0.37898 0.00022368 590.2329443572081 43.369 1.3486 40.603 40.146 41.495 -2.7661 67 37 3 0 0 0 1.3486E-08 2 7875 7873;7875 152.41 102.48 1 11741000 43449 6047 28865 28885 42830;42831 42831 -0.13045512800658798 SSESGHYYSY 10 Unmodified _SSESGHYYSY_ 0 0 0 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 590.233093 1178.45163 -0.025653 -1.5141E-05 0.28528 0.00016838 0.25963 0.00015324 590.2331845375226 43.298 0.9734 40.692 40.315 41.289 -2.606 -0.0031925 0.00022717 NaN 158.2 69 27 4 NaN NaN NaN NaN 0 NaN NaN 0 9966900 43450 6047 28865 28885 -0.13045512800658798 SSESYRPKK 9 Unmodified _SSESYRPKK_ 0 0 0 REV__ENST00000509702.5_1_4:23766811-23826805:-|nuORF REV__ENST00000509702.5_1_4:23766811-23826805:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.284423828125 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 166.45 1 161.66 161.16 162.16 -4.7898 0 0 0 0.22251 1 33443 33443 16.942 2.104 1 + 43451 15178 28866 28886 42832 42832 0.019316534665676954 SSETEIRWA 9 Unmodified _SSETEIRWA_ 0 0 0 AKNA|p.K380Sfs*30|1|0.3|ENSG00000106948|chr9:114376670-114376670|G/-|frameshift_variant;nc|ENSG00000106948|Q7Z591-6|AKNA;nc|ENSG00000106948|Q7Z591-3|AKNA;ENSG00000106948|ENST00000374088|AKNA AKNA|p.K380Sfs*30|1|0.3|ENSG00000106948|chr9:114376670-114376670|G/-|frameshift_variant AKNA|p.K380Sfs*30|1|0.3|ENSG00000106948|chr9:114376670-114376670|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2640380859375 2 539.76182 1077.50909 0.17542 9.4683E-05 -0.22905 -0.00012363 -0.053638 -2.8952E-05 539.761692699391 53.534 0.80562 50.446 50.111 50.917 -3.0876 56 22 4 0 0 0 0.54933 1 9840 9840 12.241 12.241 1 30692000 43452 112 28867 28887 42833 42833 -0.026566258044113056 SSEYYYCSRS 10 Unmodified _SSEYYYCSRS_ 0 0 0 REV__ENST00000509702.5_1_4:23766811-23826805:-|nuORF REV__ENST00000509702.5_1_4:23766811-23826805:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7678833007812 2 622.748053 1243.48155 NaN NaN NaN NaN NaN NaN NaN 24.469 1 22.615 22.115 23.115 -1.8534 0 0 0 0.22588 1 3979 3979 10.074 1.3285 1 + 43453 15178 28868 28888 42834 42834 -0.1304489712697432 SSFDSQNFY 9 Unmodified _SSFDSQNFY_ 0 0 0 REV__nc|ENSG00000054523|O60333-2|KIF1B REV__nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7710571289062 2 547.724904 1093.43525 0.23332 0.0001278 0.58959 0.00032293 0.82291 0.00045073 547.7253119434175 71.827 0.67313 71.827 71.416 72.089 0 27 18 2 0 0 0 0.31714 1 13886 13886 30.637 0 1 2570400 + 43454 14104 28869 28889 42835 42835 -0.107725939667489 SSFDSQNFY 9 Unmodified _SSFDSQNFY_ 0 0 0 REV__nc|ENSG00000054523|O60333-2|KIF1B REV__nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7748413085938 2 547.724904 1093.43525 0.14194 7.7741E-05 0.59204 0.00032428 0.73398 0.00040202 547.7251818970276 75.736 0.897 72.013 71.652 72.549 -3.7227 42 25 2 0 0 0 0.31714 3 14382 14319;14382;14389 30.637 8.727 1 4896800 + 43455 14104 28869 28889 42836;42837;42838 42837 -0.107725939667489 SSFDSQNFY 9 Unmodified _SSFDSQNFY_ 0 0 0 REV__nc|ENSG00000054523|O60333-2|KIF1B REV__nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7843017578125 2 547.724904 1093.43525 0.31871 0.00017457 0.23335 0.00012781 0.55206 0.00030238 547.7250964645431 75.667 0.76561 72.033 71.643 72.409 -3.6337 43 21 3 0 0 0 0.41081 1 14370 14370 10.899 3.4219 1 4113900 + 43456 14104 28869 28889 42839 42839 -0.107725939667489 SSFEIHDDTE 10 Unmodified _SSFEIHDDTE_ 0 0 0 ENSG00000183434|ENST00000310125|TFDP3 ENSG00000183434|ENST00000310125|TFDP3 ENSG00000183434|ENST00000310125|TFDP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2973937988281 3 393.83153 1178.47276 -0.057999 -2.2842E-05 1.2193 0.00048021 1.1613 0.00045737 394.1660381333053 153.75 0.56633 153.75 153.51 154.08 0 23 15 2 0 0 0 0.91149 1 30851 30851 0.62683 0.21856 1 4461500 43457 6846 28870 28890 42840 42840 -0.10933547491822537 SSFLKAHLY 9 Unmodified _SSFLKAHLY_ 0 0 0 REV__ENST00000415030.6_1_11:118005707-118005986:-|nuORF REV__ENST00000415030.6_1_11:118005707-118005986:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2818603515625 2 533.290017 1064.56548 NaN NaN NaN NaN NaN NaN NaN 151.61 1 146.37 145.87 146.87 -5.2365 0 0 0 0.23508 1 29388 29388 12.532 3.1841 1 + 43458 21449 28871 28891 42841 42841 0.03578046822894976 SSFRKNYYS 9 Unmodified _SSFRKNYYS_ 0 0 0 nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;BDP1|p.T1314Qfs*10|1|0.15|ENSG00000145734|chr5:71511028-71511028|A/-|frameshift_variant;nc|ENSG00000145734|A6H8Y1-4|BDP1;nc|ENSG00000145734|A6H8Y1-3|BDP1;BDP1|p.L313*|1|0.33|ENSG00000145734|chr5:71470406-71470406|T/-|frameshift_variant;BDP1|p.L313Ffs*9|1|0.2|ENSG00000145734|chr5:71470405-71470406|-/T|frameshift_variant;BDP1|p.N597Ifs*16|1|0.21|ENSG00000145734|chr5:71495394-71495394|A/-|frameshift_variant nc|ENSG00000145734|A6H8Y1-2|BDP1 nc|ENSG00000145734|A6H8Y1-2|BDP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3361206054688 2 576.277638 1150.54072 NaN NaN NaN NaN NaN NaN NaN 66.653 1 63.157 62.657 63.657 -3.4965 0 0 0 0.23508 1 12495 12495 7.9102 0.62092 1 43459 4618 28872 28892 42842 42842 -0.028526330504973885 SSFSICFF 8 Unmodified _SSFSICFF_ 0 0 0 L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1140441894531 3 313.142323 936.40514 NaN NaN NaN NaN NaN NaN NaN 31.893 1 29.745 29.245 30.245 -2.1483 0 0 0 0.21486 1 5509 5509 1.8442 0 1 43460 12042 28873 28893 42843 42843 -0.06560624165649642 SSFSICFF 8 Unmodified _SSFSICFF_ 0 0 0 L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.12744140625 3 313.142323 936.40514 NaN NaN NaN NaN NaN NaN NaN 51.228 1 48.176 47.676 48.676 -3.0517 0 0 0 0.21486 1 9435 9435 1.8442 0 1 43461 12042 28873 28893 42844 42844 -0.06560624165649642 SSFSICFF 8 Unmodified _SSFSICFF_ 0 0 0 L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1369934082031 3 313.142323 936.40514 NaN NaN NaN NaN NaN NaN NaN 51.335 1 48.283 47.783 48.783 -3.0517 0 0 0 0.21486 1 9457 9457 1.8442 0 1 43462 12042 28873 28893 42845 42845 -0.06560624165649642 SSFSICFF 8 Unmodified _SSFSICFF_ 0 0 0 L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.12066650390625 3 313.142323 936.40514 NaN NaN NaN NaN NaN NaN NaN 58.375 1 55.17 54.67 55.67 -3.2052 0 0 0 0.21486 1 10892 10892 1.8442 0 1 43463 12042 28873 28893 42846 42846 -0.06560624165649642 SSFSICFF 8 Unmodified _SSFSICFF_ 0 0 0 L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1853332519531 3 313.142323 936.40514 NaN NaN NaN NaN NaN NaN NaN 66.782 1 63.455 62.955 63.955 -3.3268 0 0 0 0.21486 1 12580 12580 1.8442 0 1 43464 12042 28873 28893 42847 42847 -0.06560624165649642 SSFSICFF 8 Unmodified _SSFSICFF_ 0 0 0 L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1405334472656 3 313.142323 936.40514 NaN NaN NaN NaN NaN NaN NaN 67.2 1 63.873 63.373 64.373 -3.3268 0 0 0 0.21486 1 12667 12667 1.8442 0 1 43465 12042 28873 28893 42848 42848 -0.06560624165649642 SSFSICFF 8 Unmodified _SSFSICFF_ 0 0 0 L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1496276855469 3 313.142323 936.40514 NaN NaN NaN NaN NaN NaN NaN 67.914 1 64.588 64.088 65.088 -3.3268 0 0 0 0.21486 1 12814 12814 1.8442 0 1 43466 12042 28873 28893 42849 42849 -0.06560624165649642 SSFSICFF 8 Unmodified _SSFSICFF_ 0 0 0 L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1322021484375 3 313.142323 936.40514 NaN NaN NaN NaN NaN NaN NaN 103.82 1 99.769 99.269 100.27 -4.0543 0 0 0 0.21486 1 19962 19962 1.8442 0 1 43467 12042 28873 28893 42850 42850 -0.06560624165649642 SSFSICFF 8 Unmodified _SSFSICFF_ 0 0 0 L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense L1MEc_dup3336|chr2:240608187-240609964:-|1.13586293163383|0.2420686587065728|2.23|478.0|117|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.164794921875 3 313.142323 936.40514 NaN NaN NaN NaN NaN NaN NaN 142.42 1 137.52 137.02 138.02 -4.8982 0 0 0 0.21486 1 27481 27481 1.8442 0 1 43468 12042 28873 28893 42851 42851 -0.06560624165649642 SSFSVEKMNI 10 Unmodified _SSFSVEKMNI_ 0 0 0 REV__tr|U7T2G6|U7T2G6_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00444PE=4SV=1 REV__tr|U7T2G6|U7T2G6_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00444PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21954345703125 3 381.190113 1140.54851 NaN NaN NaN NaN NaN NaN NaN 46.217 1 43.352 42.852 43.852 -2.8653 0 0 0 0.22588 1 8396 8396 3.3196 0 1 + 43469 25326 28874 28894 42852 42852 -0.01614241845209108 SSFTHTPP 8 Unmodified _SSFTHTPP_ 0 0 0 REV__ENST00000534515.1_1_11:67119998-67120379:-|nuORF REV__ENST00000534515.1_1_11:67119998-67120379:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.218994140625 2 437.208692 872.402832 NaN NaN NaN NaN NaN NaN NaN 42.949 1 40.23 39.73 40.73 -2.7191 0 0 0 0.23749 1 8043 8043 0.62683 0.37535 1 + 43470 22803 28875 28895 42853 42853 -0.03847336579099192 SSGAGGPG 8 Unmodified _SSGAGGPG_ 0 0 0 ENSG00000105538|ENST00000222145|RASIP1 ENSG00000105538|ENST00000222145|RASIP1 ENSG00000105538|ENST00000222145|RASIP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2485961914062 1 589.257631 588.250354 0.3344 0.00019705 2.0896 0.0012313 2.424 0.0014283 589.2623306876941 121.76 0.18182 117.23 117.15 117.33 -4.5305 5 4 2 0 0 0 0.76728 1 23430 23430 5.7604 0 1 411380 43471 2316 28876 28896 42854 42854 -0.06024112255840919 SSGGDHCS 8 Unmodified _SSGGDHCS_ 0 0 0 REV__ENSG00000130584|ENST00000245663|ZBTB46 REV__ENSG00000130584|ENST00000245663|ZBTB46 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2204284667969 2 375.129585 748.244617 NaN NaN NaN NaN NaN NaN NaN 69.043 1 69.043 68.543 69.543 0 0 0 0 0.21486 1 13359 13359 5.7604 0 1 + 43472 16017 28877 28897 42855 42855 -0.13957578829831618 SSGGGGSN 8 Unmodified _SSGGGGSN_ 0 0 0 REV__ENSG00000139800|ENST00000267294|ZIC5 REV__ENSG00000139800|ENST00000267294|ZIC5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.778076171875 1 622.242709 621.235432 0.41914 0.0002608 -3.5115 -0.002185 -3.0923 -0.0019242 622.2382953159982 135.58 0.17569 130.75 130.63 130.81 -4.8307 5 4 2 0 0 0 1.028 1 26102 26102 0.69038 0 1 1071200 + 43473 16544 28878 28898 42856 42856 -0.09033604123851546 SSGGYLDIVKL 11 Unmodified _SSGGYLDIVKL_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3190307617188 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 73.048 1 69.738 69.238 70.238 -3.3107 0 0 0 0.22943 1 14240 14240 8.7454 0.58988 1 43474 3680 28879 28899 42857 42857 0.05410263957674033 SSGHFSNIPP 10 Unmodified _SSGHFSNIPP_ 0 0 0 ENSG00000124827|ENST00000379491|GCM2;GCM2|p.A398Cfs*6|1|0.45|ENSG00000124827|chr6:10874325-10874326|-/G|frameshift_variant ENSG00000124827|ENST00000379491|GCM2 ENSG00000124827|ENST00000379491|GCM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2774047851562 2 521.751256 1041.48796 -0.05682 -2.9646E-05 0.48395 0.0002525 0.42713 0.00022286 521.7503787131119 44.995 0.17147 42.248 42.134 42.306 -2.7475 6 4 2 0 0 0 0.72406 1 8164 8164 8.7454 2.5396 1 310830 43475 3336 28880 28900 42858 42858 -0.03112591113290364 SSGHMHAL 8 Unmodified _SSGHMHAL_ 0 0 0 OBSL1-MRPL2|1|fusion;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1 OBSL1-MRPL2|1|fusion OBSL1-MRPL2|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 420.31915283203125 2 420.195062 838.375571 -0.12363 -5.1949E-05 -0.40122 -0.00016859 -0.52485 -0.00022054 420.1947988538459 132.99 0.3913 128.19 127.9 128.29 -4.799 11 10 2 0 0 0 1.0147 1 25583 25583 5.2307 0 1 822990 43476 12722 28881 28901 42859 42859 -0.0500814339113731 SSGHMHAL 8 Unmodified _SSGHMHAL_ 0 0 0 OBSL1-MRPL2|1|fusion;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1 OBSL1-MRPL2|1|fusion OBSL1-MRPL2|1|fusion MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 420.195062 838.375571 0.014832 6.2324E-06 -0.72809 -0.00030594 -0.71326 -0.00029971 420.1946975347885 133.03 0.57454 128.18 127.81 128.39 -4.8528 -0.0061065 -0.00012506 NaN 5.2307 26 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1188300 43477 12722 28881 28901 -0.0500814339113731 SSGKLQAA 8 Unmodified _SSGKLQAA_ 0 0 0 ACTR3B-JMJD1C|1|fusion;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C ACTR3B-JMJD1C|1|fusion ACTR3B-JMJD1C|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21014404296875 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 108.11 1 103.69 103.19 104.19 -4.4121 0 0 0 0.2396 1 20741 20741 0.0082765 0 1 43478 44 28882 28902 42860 42860 0.018129672835129895 SSGKNLSG 8 Unmodified _SSGKNLSG_ 0 0 0 ENST00000607322.1_1_9:100000884-100000956:-|nuORF ENST00000607322.1_1_9:100000884-100000956:-|nuORF ENST00000607322.1_1_9:100000884-100000956:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2182922363281 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 51.029 1 47.977 47.477 48.477 -3.0517 0 0 0 0.23664 1 9394 9394 3.2813 0 1 43479 11760 28883 28903 42861 42861 -0.012719096131945662 SSGLSLKMM 9 Unmodified _SSGLSLKMM_ 0 0 0 REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 477.24481201171875 2 477.243363 952.472174 NaN NaN NaN NaN NaN NaN NaN 152.3 1 147.54 147.04 148.04 -4.7523 0 0 0 0.19711 1 30262 30262 4.7159 0 1 + 43480 15651 28884 28904 42862 42862 -0.005963369461937873 SSGSGADVIY 10 Unmodified _SSGSGADVIY_ 0 0 0 REV__ENSG00000156006|ENST00000286479|NAT2 REV__ENSG00000156006|ENST00000286479|NAT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72369384765625 2 478.221997 954.429441 -0.23091 -0.00011043 0.46485 0.0002223 0.23395 0.00011188 478.22218828217626 35.003 0.56136 32.609 32.318 32.88 -2.3938 36 15 3 0 0 0 0.40256 1 6454 6454 30.637 0 1 4437300 + 43481 17236 28885 28905 42863 42863 -0.04959692478416855 SSGSSPIRY 9 Unmodified _SSGSSPIRY_ 0 0 0 CCDC88A|p.Q1644R|1|0.16|ENSG00000115355|chr2:55296418-55296418|T/C|missense_variant CCDC88A|p.Q1644R|1|0.16|ENSG00000115355|chr2:55296418-55296418|T/C|missense_variant CCDC88A|p.Q1644R|1|0.16|ENSG00000115355|chr2:55296418-55296418|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.5278015136719 3 318.494413 952.461409 NaN NaN NaN NaN NaN NaN NaN 44.03 1 44.03 43.53 44.53 0 0 0 0 0.19632 1 8253 8253 2.6312 2.5084 1 43482 425 28886 28906 42864 42864 -0.01672280004629556 SSGSVLIG 8 Unmodified _SSGSVLIG_ 0 0 0 ENST00000471095.5_1_3:141713860-141724285:-|nuORF;nc|ENSG00000114126|Q14188-2|TFDP2;nc|ENSG00000114126|Q14188-3|TFDP2;nc|ENSG00000114126|Q14188-4|TFDP2;nc|ENSG00000114126|Q14188-5|TFDP2;nc|ENSG00000114126|Q14188-8|TFDP2;ENSG00000114126|ENST00000489671|TFDP2 ENST00000471095.5_1_3:141713860-141724285:-|nuORF ENST00000471095.5_1_3:141713860-141724285:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013854980469 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 81.445 1 81.445 80.945 81.945 0 0 0 0 0.21486 1 15861 15861 5.7604 0 1 43483 2777 28887 28907 42865 42865 0.01566162534970772 SSHEAPHGCDL 11 Unmodified _SSHEAPHGCDL_ 0 0 0 REV__GPR101|p.S141Vfs*36|1|0.29|ENSG00000165370|chrX:137031255-137031256|-/G|frameshift_variant REV__GPR101|p.S141Vfs*36|1|0.29|ENSG00000165370|chrX:137031255-137031256|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3361206054688 2 576.740562 1151.46657 -0.020205 -1.1653E-05 3.6912 0.0021289 3.671 0.0021172 577.2432171983427 63.452 0.17205 63.452 63.296 63.468 0 6 4 2 0 0 0 0.91954 1 12170 12170 9.3831 0 1 1177100 + 43484 23586 28888 28908 42866 42866 -0.10310344204299327 SSHEDWDLRD 10 Unmodified _SSHEDWDLRD_ 0 0 0 REV__ENST00000461981.5_1_2:201718031-201721754:-|nuORF REV__ENST00000461981.5_1_2:201718031-201721754:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.769287109375 2 630.267998 1258.52144 0.087913 5.5409E-05 0.79442 0.0005007 0.88234 0.00055611 630.2690754943947 62.744 1.0496 62.744 62.106 63.156 0 48 26 3 0 0 0 0.744 1 12062 12062 6.7232 2.7788 1 14455000 + 43485 13949 28889 28909 42867 42867 -0.09747634132054372 SSHEDWDLRD 10 Unmodified _SSHEDWDLRD_ 0 0 0 REV__ENST00000461981.5_1_2:201718031-201721754:-|nuORF REV__ENST00000461981.5_1_2:201718031-201721754:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7694702148438 2 630.267998 1258.52144 0.94849 0.0005978 -1.9875 -0.0012527 -1.039 -0.00065487 630.2667559816301 60.6 0.62177 57.667 57.375 57.996 -2.9333 25 17 2 0 0 0 0.91149 1 11604 11604 6.7232 0.99131 1 2470000 + 43486 13949 28889 28909 42868 42868 -0.09747634132054372 SSHEMVEDI 9 Unmodified _SSHEMVEDI_ 0 0 0 REV__TUBGCP5|p.G336E|1|0.25|ENSG00000275835|chr15:23024108-23024108|C/T|missense_variant REV__TUBGCP5|p.G336E|1|0.25|ENSG00000275835|chr15:23024108-23024108|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6980590820312 2 523.726589 1045.43863 NaN NaN NaN NaN NaN NaN NaN 70.424 1 66.957 66.457 67.457 -3.467 0 0 0 0.23508 1 13338 13338 12.532 0.89125 1 + 43487 25504 28890 28910 42869 42869 -0.08227667184405618 SSHEMVEDI 9 Unmodified _SSHEMVEDI_ 0 0 0 REV__TUBGCP5|p.G336E|1|0.25|ENSG00000275835|chr15:23024108-23024108|C/T|missense_variant REV__TUBGCP5|p.G336E|1|0.25|ENSG00000275835|chr15:23024108-23024108|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6995849609375 2 523.726589 1045.43863 NaN NaN NaN NaN NaN NaN NaN 70.709 1 67.242 66.742 67.742 -3.467 0 0 0 0.23508 1 13394 13394 12.532 0.89125 1 + 43488 25504 28890 28910 42870 42870 -0.08227667184405618 SSHKTFRIK 9 Unmodified _SSHKTFRIK_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 368.87078857421875 3 368.548852 1102.62473 -0.50421 -0.00018583 0.64405 0.00023737 0.13985 5.154E-05 368.5491375484658 17.25 0.17838 16.034 15.912 16.09 -1.2159 8 4 2 0 0 0 0.35556 1 2746 2746 12.241 9.7422 1 431680 43489 7525 28891 28911 42871 42871 0.07751942837080605 SSHKTFRIK 9 Unmodified _SSHKTFRIK_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 368.548852 1102.62473 -0.45282 -0.00016689 0.52415 0.00019317 0.071325 2.6287E-05 368.54883292309984 17.207 0.17234 15.935 15.868 16.041 -1.2722 -0.049689 -0.0001254 NaN 12.241 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 221500 43490 7525 28891 28911 0.07751942837080605 SSHLKKLNRY 10 Unmodified _SSHLKKLNRY_ 0 0 0 nc|ENSG00000061337|Q9Y250-7|LZTS1;nc|ENSG00000061337|Q9Y250-6|LZTS1;nc|ENSG00000061337|Q9Y250-5|LZTS1;nc|ENSG00000061337|Q9Y250-4|LZTS1;nc|ENSG00000061337|Q9Y250-3|LZTS1;nc|ENSG00000061337|Q9Y250-2|LZTS1;ENSG00000061337|ENST00000381569|LZTS1 nc|ENSG00000061337|Q9Y250-7|LZTS1 nc|ENSG00000061337|Q9Y250-7|LZTS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7748413085938 2 623.356754 1244.69895 0.89324 0.00055681 3.3283 0.0020747 4.2215 0.0026315 623.8615442386144 68.936 0.21025 65.756 65.588 65.798 -3.1795 7 5 2 0 0 0 0.84281 1 13369 13369 5.7319 0.43497 1 2396900 43491 1315 28892 28912 42872 42872 0.08639285928620666 SSHLTTHKKI 10 Unmodified _SSHLTTHKKI_ 0 0 0 ENSG00000196081|ENST00000418100|ZNF724;nc|ENSG00000081665|Q5JVG8-2|ZNF506;ENSG00000081665|ENST00000540806|ZNF506 ENSG00000196081|ENST00000418100|ZNF724 ENSG00000196081|ENST00000418100|ZNF724 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3358154296875 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 63.743 1 63.743 63.243 64.243 0 0 0 0 0.22588 1 12262 12262 10.824 0 1 43492 7230 28893 28913 42873 42873 0.0765590814596635 SSHPSCCCT 9 Unmodified _SSHPSCCCT_ 0 0 0 nc|ENSG00000100422|Q8TCT0-2|CERK;ENSG00000100422|ENST00000216264|CERK nc|ENSG00000100422|Q8TCT0-2|CERK nc|ENSG00000100422|Q8TCT0-2|CERK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 462.65234375 2 462.654055 923.293558 NaN NaN NaN NaN NaN NaN NaN 146.78 1 146.78 146.28 147.28 0 0 0 0 0.1963 1 29359 29359 0.073264 0 1 43493 1976 28894 28914 42874 42874 -0.17115749856748153 SSHPSKNPKGL 11 Unmodified _SSHPSKNPKGL_ 0 0 0 REV__NCKAP5L|p.P949Rfs*23|1|0.14|ENSG00000167566|chr12:49795014-49795014|G/-|frameshift_variant REV__NCKAP5L|p.P949Rfs*23|1|0.14|ENSG00000167566|chr12:49795014-49795014|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.312744140625 2 576.312012 1150.60947 0.095036 5.477E-05 0.14944 8.6126E-05 0.24448 0.0001409 576.312056406261 56.748 0.27537 56.748 56.641 56.916 0 11 7 2 0 0 0 0.66829 1 10839 10839 13.906 0.86358 1 1051700 + 43494 17940 28895 28915 42875 42875 0.04019031249231375 SSHPSKNPKGL 11 Unmodified _SSHPSKNPKGL_ 0 0 0 REV__NCKAP5L|p.P949Rfs*23|1|0.14|ENSG00000167566|chr12:49795014-49795014|G/-|frameshift_variant REV__NCKAP5L|p.P949Rfs*23|1|0.14|ENSG00000167566|chr12:49795014-49795014|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.312012 1150.60947 0.15276 8.804E-05 -0.11517 -6.6376E-05 0.037591 2.1664E-05 576.3119482266259 60.076 0.35342 56.853 56.709 57.063 -3.2237 -0.0049634 5.4957E-05 NaN 13.906 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1000000 + 43495 17940 28895 28915 0.04019031249231375 SSHTDIDWYH 10 Unmodified _SSHTDIDWYH_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7684326171875 2 630.767634 1259.52072 0.10026 6.324E-05 -0.055191 -3.4813E-05 0.045068 2.8428E-05 630.7686509523778 59.158 0.71231 59.158 58.9 59.612 0 27 19 2 0 0 0 0.744 1 11344 11344 6.7232 0 1 3691800 43496 1498 28896 28916 42876 42876 -0.09866428781083414 SSHTDIDWYH 10 Unmodified _SSHTDIDWYH_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7667236328125 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 55.124 1 55.124 54.624 55.624 0 0 0 0 0.22588 1 10516 10516 6.7232 0.99131 1 43497 1498 28896 28916 42877 42877 -0.09866428781083414 SSHTDIDWYH 10 Unmodified _SSHTDIDWYH_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.755126953125 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 66.134 1 66.134 65.634 66.634 0 0 0 0 0.22588 1 12766 12766 6.7232 0.99131 1 43498 1498 28896 28916 42878 42878 -0.09866428781083414 SSHTDIDWYH 10 Unmodified _SSHTDIDWYH_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7713012695312 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 67.938 1 67.938 67.438 68.438 0 0 0 0 0.22588 1 13134 13134 6.7232 1.9672 1 43499 1498 28896 28916 42879 42879 -0.09866428781083414 SSHTDIDWYH 10 Unmodified _SSHTDIDWYH_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7697143554688 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 59.221 1 56.311 55.811 56.811 -2.9105 0 0 0 0.22588 1 11381 11381 6.7232 0.51738 1 43500 1498 28896 28916 42880 42880 -0.09866428781083414 SSHTDIDWYH 10 Unmodified _SSHTDIDWYH_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7534790039062 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 59.546 1 56.613 56.113 57.113 -2.9333 0 0 0 0.22588 1 11451 11451 6.7232 0 1 43501 1498 28896 28916 42881 42881 -0.09866428781083414 SSHTDIDWYH 10 Unmodified _SSHTDIDWYH_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.769287109375 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 59.822 1 56.889 56.389 57.389 -2.9333 0 0 0 0.22588 1 11505 11505 10.074 3.3508 1 43502 1498 28896 28916 42882 42882 -0.09866428781083414 SSHTDIDWYH 10 Unmodified _SSHTDIDWYH_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7550048828125 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 69.556 1 66.02 65.52 66.52 -3.5362 0 0 0 0.22588 1 13096 13096 6.7232 0 1 43503 1498 28896 28916 42883 42883 -0.09866428781083414 SSHTDIDWYH 10 Unmodified _SSHTDIDWYH_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.765869140625 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 69.588 1 66.051 65.551 66.551 -3.5362 0 0 0 0.22588 1 13102 13102 6.7232 0.51738 1 43504 1498 28896 28916 42884 42884 -0.09866428781083414 SSHTDIDWYH 10 Unmodified _SSHTDIDWYH_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7708740234375 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 70.07 1 66.491 65.991 66.991 -3.5798 0 0 0 0.22588 1 13203 13203 3.5965 0.31518 1 43505 1498 28896 28916 42885 42885 -0.09866428781083414 SSHTDIDWYH 10 Unmodified _SSHTDIDWYH_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7628173828125 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 69.208 1 65.818 65.318 66.318 -3.3903 0 0 0 0.22588 1 13082 13082 6.7232 0.99131 1 43506 1498 28896 28916 42886 42886 -0.09866428781083414 SSHVETTSFSY 11 Unmodified _SSHVETTSFSY_ 0 0 0 ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant;ZDBF2|p.L2270*|1|0.42|ENSG00000204186|chr2:206311334-206311334|T/-|frameshift_variant;ENSG00000204186|ENST00000374423|ZDBF2;ZDBF2|p.L298Yfs*10|1|0.13|ENSG00000204186|chr2:206305420-206305421|-/ATTTGATTCTTTATGTTTC|frameshift_variant;ZDBF2|p.K613Nfs*34|1|0.38|ENSG00000204186|chr2:206306364-206306364|A/-|frameshift_variant;ZDBF2|p.T1000Qfs*3|1|0.17|ENSG00000204186|chr2:206307522-206307522|A/-|frameshift_variant ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7557373046875 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 61.019 1 61.019 60.519 61.519 0 0 0 0 0.23264 1 11706 11706 6.2058 0.47393 1 43507 7565 28897 28917 42887 42887 -0.07632981703750374 SSIDIERKKGI 11 Unmodified _SSIDIERKKGI_ 0 0 0 REV__CCDC87|p.P639Hfs*3|2|0.25|ENSG00000182791|chr11:66591100-66591100|G/-|frameshift_variant REV__CCDC87|p.P639Hfs*3|2|0.25|ENSG00000182791|chr11:66591100-66591100|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7821655273438 2 623.361702 1244.70885 1.0205 0.00063612 -1.3623 -0.00084924 -0.34188 -0.00021312 623.8625862822155 62.023 0.13705 59.062 58.974 59.111 -2.9614 5 3 2 0 0 0 0.94712 1 11945 11945 0.30703 0 1 990500 + 43508 13305 28898 28918 42888 42888 0.09628429143322137 SSIFIAFLCLF 11 Unmodified _SSIFIAFLCLF_ 0 0 0 REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|91|2|anti-sense REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|91|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.76220703125 2 630.838485 1259.66242 NaN NaN NaN NaN NaN NaN NaN 72.075 1 68.447 67.947 68.947 -3.6275 0 0 0 0.23264 1 13603 13603 6.2058 0.47393 1 + 43509 23754 28899 28919 42889 42889 0.04297272987651013 SSIKPLEQSY 10 Unmodified _SSIKPLEQSY_ 0 0 0 nc|ENSG00000185739|Q86TD4-1|SRL;nc|ENSG00000185739|Q86TD4-3|SRL;ENSG00000185739|ENST00000399609|SRL nc|ENSG00000185739|Q86TD4-1|SRL nc|ENSG00000185739|Q86TD4-1|SRL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3359985351562 2 576.300778 1150.587 NaN NaN NaN NaN NaN NaN NaN 65.694 1 62.411 61.911 62.911 -3.2832 0 0 0 0.22569 1 12353 12353 15.847 2.3393 1 43510 12516 28900 28920 42890 42890 0.01773387060939058 SSIKPLEQSY 10 Unmodified _SSIKPLEQSY_ 0 0 0 nc|ENSG00000185739|Q86TD4-1|SRL;nc|ENSG00000185739|Q86TD4-3|SRL;ENSG00000185739|ENST00000399609|SRL nc|ENSG00000185739|Q86TD4-1|SRL nc|ENSG00000185739|Q86TD4-1|SRL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3236694335938 2 576.300778 1150.587 NaN NaN NaN NaN NaN NaN NaN 65.758 1 62.475 61.975 62.975 -3.2832 0 0 0 0.22569 1 12366 12366 15.847 1.2655 1 43511 12516 28900 28920 42891 42891 0.01773387060939058 SSILDWCICSD 11 Unmodified _SSILDWCICSD_ 0 0 0 REV__ENST00000480630.5_1_1:40430901-40433516:+|nuORF REV__ENST00000480630.5_1_1:40430901-40433516:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7677001953125 2 621.262481 1240.51041 0.94294 0.00058581 1.0015 0.00062217 1.9444 0.001208 621.2634044980759 84.319 2.5188 80.655 80.059 82.577 -3.6641 256 71 6 0 0 0 0.46893 1 16584 16584 0.58532 0 1 925800000 + 43512 22167 28901 28921 42892 42892 -0.10022495822204291 SSILLQIKHI 10 Unmodified _SSILLQIKHI_ 0 0 0 ENST00000476615.1_1_2:113258880-113278003:+|nuORF;ENSG00000114999|ENST00000233336|TTL ENST00000476615.1_1_2:113258880-113278003:+|nuORF ENST00000476615.1_1_2:113258880-113278003:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.336669921875 2 576.360973 1150.70739 NaN NaN NaN NaN NaN NaN NaN 59.156 1 55.951 55.451 56.451 -3.2052 0 0 0 0.22588 1 11045 11045 10.074 2.7847 1 43513 2820 28902 28922 42893 42893 0.13806839845233299 SSIPQAVAA 9 Unmodified _SSIPQAVAA_ 0 0 0 REV__ENST00000569796.1_1_16:2281646-2281928:+|nuORF REV__ENST00000569796.1_1_16:2281646-2281928:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3780517578125 1 843.457059 842.449782 0.69294 0.00058447 -0.435 -0.0003669 0.25794 0.00021756 843.4566442918318 50.113 1.5833 50.113 49.547 51.131 0 132 45 5 0 0 0 0.39189 1 9380 9380 26.268 4.5215 1 156130000 + 43514 23156 28903 28923 42894 42894 0.022255229720371972 SSKASSVV 8 Unmodified _SSKASSVV_ 0 0 0 REV__ENSG00000162419|ENST00000373816|GMEB1 REV__ENSG00000162419|ENST00000373816|GMEB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 382.8900451660156 2 382.711068 763.407583 0.079566 3.0451E-05 -4.3874 -0.0016791 -4.3078 -0.0016486 382.7097011534403 20.516 0.21569 19.119 18.964 19.18 -1.3966 8 5 2 0 0 0 0.89712 1 3410 3410 0.30703 0 1 330360 + 43515 17497 28904 28924 42895 42895 0.01641547563679069 SSKASSVV 8 Unmodified _SSKASSVV_ 0 0 0 REV__ENSG00000162419|ENST00000373816|GMEB1 REV__ENSG00000162419|ENST00000373816|GMEB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 382.711068 763.407583 -1.5092 -0.00057757 -3.2597 -0.0012475 -4.7688 -0.0018251 382.7102373837338 20.576 0.21067 18.855 18.765 18.975 -1.7211 -0.13209 0.0004023 NaN 0.30703 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 168190 + 43516 17497 28904 28924 0.01641547563679069 SSKGVGGK 8 Unmodified _SSKGVGGK_ 0 0 0 REV__tr|U7T6Q9|U7T6Q9_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00168PE=3SV=1 REV__tr|U7T6Q9|U7T6Q9_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00168PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2051696777344 2 360.205953 718.397353 NaN NaN NaN NaN NaN NaN NaN 80.64 1 77.083 76.583 77.583 -3.557 0 0 0 0.23538 1 15749 15749 0.12286 0 1 + 43517 25453 28905 28925 42896 42896 0.02688984629105562 SSKGVGGK 8 Unmodified _SSKGVGGK_ 0 0 0 REV__tr|U7T6Q9|U7T6Q9_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00168PE=3SV=1 REV__tr|U7T6Q9|U7T6Q9_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00168PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20477294921875 2 360.205953 718.397353 NaN NaN NaN NaN NaN NaN NaN 80.849 1 77.292 76.792 77.792 -3.557 0 0 0 0.23107 1 15786 15786 0.25148 0.12861 1 + 43518 25453 28905 28925 42897 42897 0.02688984629105562 SSKHSPLTA 9 Unmodified _SSKHSPLTA_ 0 0 0 nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L;ENST00000482433.1_1_19:2221901-2222597:+|nuORF nc|ENSG00000104885|Q8TEK3-1|DOT1L nc|ENSG00000104885|Q8TEK3-1|DOT1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2509765625 2 464.248349 926.482145 -0.08553 -3.9707E-05 -0.018023 -8.3673E-06 -0.10355 -4.8074E-05 464.24827390518686 41.362 1.2634 38.822 38.348 39.611 -2.5398 81 35 4 0 0 0 0.60061 1 7418 7418 13.042 0 1 10123000 43519 12268 28906 28926 42898 42898 0.015963103750209484 SSKHSPLTA 9 Unmodified _SSKHSPLTA_ 0 0 0 nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L;ENST00000482433.1_1_19:2221901-2222597:+|nuORF nc|ENSG00000104885|Q8TEK3-1|DOT1L nc|ENSG00000104885|Q8TEK3-1|DOT1L MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.248349 926.482145 0.26275 0.00012198 -0.50957 -0.00023657 -0.24682 -0.00011459 464.24808623848753 38.84 1.1617 38.84 38.247 39.409 0 0.0068042 -0.00037149 NaN 13.042 84 32 4 NaN NaN NaN NaN 0 NaN NaN 0 10231000 43520 12268 28906 28926 0.015963103750209484 SSKHSPLTA 9 Unmodified _SSKHSPLTA_ 0 0 0 nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L;ENST00000482433.1_1_19:2221901-2222597:+|nuORF nc|ENSG00000104885|Q8TEK3-1|DOT1L nc|ENSG00000104885|Q8TEK3-1|DOT1L MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.248349 926.482145 -0.2504 -0.00011625 0.18396 8.5402E-05 -0.066444 -3.0846E-05 464.2483655171451 41.443 1.1378 38.809 38.396 39.534 -2.6348 -0.024499 0.00027244 NaN 13.042 84 32 4 NaN NaN NaN NaN 0 NaN NaN 0 11160000 43521 12268 28906 28926 0.015963103750209484 SSKHSPLTA 9 Unmodified _SSKHSPLTA_ 0 0 0 nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L;ENST00000482433.1_1_19:2221901-2222597:+|nuORF nc|ENSG00000104885|Q8TEK3-1|DOT1L nc|ENSG00000104885|Q8TEK3-1|DOT1L MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.248349 926.482145 0.053144 2.4672E-05 -0.084047 -3.9019E-05 -0.030904 -1.4347E-05 464.24823590479514 41.352 1.1615 38.862 38.386 39.547 -2.4896 0.028913 2.36E-05 NaN 13.042 86 32 4 NaN NaN NaN NaN 0 NaN NaN 0 8307800 43522 12268 28906 28926 0.015963103750209484 SSKIIHWYWQK 11 Unmodified _SSKIIHWYWQK_ 0 0 0 nc|ENSG00000211693|A0A075B6L2|TRGV11 nc|ENSG00000211693|A0A075B6L2|TRGV11 nc|ENSG00000211693|A0A075B6L2|TRGV11 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 738.3928833007812 2 738.393336 1474.77212 NaN NaN NaN NaN NaN NaN NaN 54.717 1 51.582 51.082 52.082 -3.1352 0 0 0 0.23698 1 10103 10103 1.3295 0 1 43523 12574 28907 28927 42899 42899 0.05372414651219515 SSKKKLTK 8 Unmodified _SSKKKLTK_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1;ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.1900634765625 3 307.202682 918.586216 NaN NaN NaN NaN NaN NaN NaN 82.449 1 78.841 78.341 79.341 -3.6079 0 0 0 0.21486 1 16114 16114 0 0 1 43524 4962;9664 28908 28928 42900 42900 0.12366637202546826 SSKLLLHQII 10 Unmodified _SSKLLLHQII_ 0 0 0 ENSG00000183309|ENST00000526926|ZNF623;nc|ENSG00000183309|O75123|ZNF623 ENSG00000183309|ENST00000526926|ZNF623 ENSG00000183309|ENST00000526926|ZNF623 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3209838867188 2 576.360973 1150.70739 NaN NaN NaN NaN NaN NaN NaN 59.136 1 55.93 55.43 56.43 -3.2052 0 0 0 0.22588 1 11039 11039 7.2892 0 1 43525 6840 28909 28929 42901 42901 0.13806839845233299 SSKLLPKR 8 Unmodified _SSKLLPKR_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1646728515625 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 133.24 1 133.24 132.74 133.74 0 0 0 0 0.23899 1 26357 26357 1.3295 0 1 + 43526 24099 28910 28930 42902 42902 0.11986056922410171 SSKLLPKR 8 Unmodified _SSKLLPKR_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1644592285156 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 137.68 1 132.84 132.34 133.34 -4.84 0 0 0 0.23899 1 26529 26529 1.3295 0 1 + 43527 24099 28910 28930 42903 42903 0.11986056922410171 SSKLQSHM 8 Unmodified _SSKLQSHM_ 0 0 0 LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant;LRRK2|p.R1639Kfs*13|1|0.36|ENSG00000188906|chr12:40320067-40320068|-/A|frameshift_variant;LRRK2|p.R1639Gfs*15|1|0.59|ENSG00000188906|chr12:40320068-40320068|A/-|frameshift_variant;LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2 LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2317810058594 2 459.229102 916.443651 0.22441 0.00010306 0.21768 9.9964E-05 0.44209 0.00020302 459.2292388457041 72.471 0.68587 68.844 68.514 69.2 -3.6275 42 18 3 0 0 0 0.70344 1 13720 13720 13.906 0 1 10925000 43528 7206 28911 28931 42904 42904 -0.017913185311158486 SSKPLEDPG 9 Unmodified _SSKPLEDPG_ 0 0 0 ENST00000416994.6_1_19:40785143-40785479:-|nuORF ENST00000416994.6_1_19:40785143-40785479:-|nuORF ENST00000416994.6_1_19:40785143-40785479:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2486267089844 2 465.232364 928.450176 -0.098086 -4.5633E-05 -0.35489 -0.00016511 -0.45297 -0.00021074 465.232136197706 79.533 1.0482 75.729 75.128 76.176 -3.8048 43 29 2 0 0 0 0.55979 1 15159 15159 15.847 0 1 1501600 43529 9626 28912 28932 42905 42905 -0.01691102098754982 SSKSWGFC 8 Unmodified _SSKSWGFC_ 0 0 0 ENST00000558831.5_1_15:63886913-63892859:-|nuORF ENST00000558831.5_1_15:63886913-63892859:-|nuORF ENST00000558831.5_1_15:63886913-63892859:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 301.1270751953125 3 301.133939 900.379988 NaN NaN NaN NaN NaN NaN NaN 89.726 1 89.726 89.226 90.226 0 0 0 0 0.21486 1 17525 17525 0.45834 0.057624 1 43530 11269 28913 28933 42906 42906 -0.07418678968224413 SSKSWGFC 8 Unmodified _SSKSWGFC_ 0 0 0 ENST00000558831.5_1_15:63886913-63892859:-|nuORF ENST00000558831.5_1_15:63886913-63892859:-|nuORF ENST00000558831.5_1_15:63886913-63892859:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 301.1329650878906 3 301.133939 900.379988 NaN NaN NaN NaN NaN NaN NaN 89.779 1 89.779 89.279 90.279 0 0 0 0 0.21486 1 17536 17536 0.45834 0.057624 1 43531 11269 28913 28933 42907 42907 -0.07418678968224413 SSKVQRFKAT 10 Unmodified _SSKVQRFKAT_ 0 0 0 ENST00000507915.1_1_11:67067469-67068955:+|nuORF;ENST00000513750.5_1_11:67067055-67069800:+|nuORF;ENST00000512231.5_1_11:67066841-67069800:+|nuORF;nc|ENSG00000172932|Q6ZTN6-1|ANKRD13D;ENSG00000172932|ENST00000511455|ANKRD13D ENST00000507915.1_1_11:67067469-67068955:+|nuORF ENST00000507915.1_1_11:67067469-67068955:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3286743164062 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 51.283 1 51.283 50.783 51.783 0 0 0 0 0.22588 1 9725 9725 10.824 3.215 1 43532 6253 28914 28934 42908 42908 0.07655908145943613 SSLAAAAC 8 Unmodified _SSLAAAAC_ 0 0 0 ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2 ENSG00000160999|ENST00000444095|SH2B2 ENSG00000160999|ENST00000444095|SH2B2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.0825500488281 2 347.165439 692.316325 NaN NaN NaN NaN NaN NaN NaN 7.7585 1 7.0793 6.5793 7.5793 -0.67913 0 0 0 0.21486 1 738 738 0.79363 0 1 43533 5279 28915 28935 42909 42909 -0.04214039405326275 SSLCSIDRY 9 Unmodified _SSLCSIDRY_ 0 0 0 REV__HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant REV__HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.271240234375 2 522.244949 1042.47534 -0.03817 -1.9934E-05 -0.15709 -8.2037E-05 -0.19526 -0.00010197 522.2447581899926 44.615 0.94754 41.868 41.219 42.167 -2.7475 52 22 3 0 0 0 0.86532 1 8138 8138 2.0598 0 1 3774900 + 43534 13925 28916 28936 42910 42910 -0.04419370567848091 SSLEELQL 8 Unmodified _SSLEELQL_ 0 0 0 ENST00000269143.7_1_18:12340228-12340279:-|nuORF ENST00000269143.7_1_18:12340228-12340279:-|nuORF ENST00000269143.7_1_18:12340228-12340279:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5382385253906 2 459.742565 917.470577 0.12832 5.8996E-05 0.13763 6.3276E-05 0.26596 0.00012227 459.74255461188 118.1 0.97391 113.6 113.1 114.08 -4.502 76 27 4 0 0 0 8448 1 23313 23313 0.12286 0 1 22845000 43535 8394 28917 28937 42911 42911 0.008540685610569199 SSLEMDDERY 10 Unmodified _SSLEMDDERY_ 0 0 0 ENSG00000108091|ENST00000263102|CCDC6 ENSG00000108091|ENST00000263102|CCDC6 ENSG00000108091|ENST00000263102|CCDC6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.771484375 2 622.758617 1243.50268 NaN NaN NaN NaN NaN NaN NaN 60.347 1 60.347 59.847 60.847 0 0 0 0 0.22588 1 11567 11567 3.9444 0 1 43536 2458 28918 28938 42912 42912 -0.10932931818115321 SSLGDLLGEGP 11 Unmodified _SSLGDLLGEGP_ 0 0 0 nc|ENSG00000241839|Q8TD55-2|PLEKHO2;ENSG00000241839|ENST00000323544|PLEKHO2 nc|ENSG00000241839|Q8TD55-2|PLEKHO2 nc|ENSG00000241839|Q8TD55-2|PLEKHO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26220703125 2 522.764029 1043.5135 0.33467 0.00017495 -1.3694 -0.00071588 -1.0347 -0.00054092 522.7626433895894 39.734 0.79845 39.734 39.166 39.964 0 29 22 2 0 0 0 0.89764 1 7331 7331 4.897 1.9018 1 1404700 43537 7858 28919 28939 42913 42913 -0.0065116138150642655 SSLKPNPDG 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SSLKPNPDG_ 1 0 0 REV__ENST00000469420.1_1_22:39267486-39267531:-|nuORF REV__ENST00000469420.1_1_22:39267486-39267531:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7387390136719 2 478.737814 955.461075 0.0030207 1.4461E-06 -0.64509 -0.00030883 -0.64207 -0.00030738 478.7374090536517 47.72 1.2903 44.778 44.134 45.425 -2.9421 58 36 2 0 0 0 0.15214 1 8654 8654 43.858 11.073 1 1317200 + 43538 22009 28920 28940 42914 42914 -0.018436997244748454 SSLLLFPVIY 10 Unmodified _SSLLLFPVIY_ 0 0 0 REV__tr|U7T6U8|U7T6U8_FUSNUConjugaltransferproteinTrbCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00015PE=4SV=1 REV__tr|U7T6U8|U7T6U8_FUSNUConjugaltransferproteinTrbCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00015PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3338012695312 2 576.339175 1150.6638 NaN NaN NaN NaN NaN NaN NaN 61.295 1 61.295 60.795 61.795 0 0 0 0 0.22588 1 11762 11762 7.2892 0.56607 1 + 43539 25455 28921 28941 42915 42915 0.09449230348081983 SSLLLFPVIY 10 Unmodified _SSLLLFPVIY_ 0 0 0 REV__tr|U7T6U8|U7T6U8_FUSNUConjugaltransferproteinTrbCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00015PE=4SV=1 REV__tr|U7T6U8|U7T6U8_FUSNUConjugaltransferproteinTrbCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00015PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3364868164062 2 576.339175 1150.6638 NaN NaN NaN NaN NaN NaN NaN 70.033 1 66.454 65.954 66.954 -3.5798 0 0 0 0.22588 1 13195 13195 7.2892 1.0834 1 + 43540 25455 28921 28941 42916 42916 0.09449230348081983 SSLLNMVTP 9 Unmodified _SSLLNMVTP_ 0 0 0 REV__tr|U7T138|U7T138_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00885PE=4SV=1 REV__tr|U7T138|U7T138_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00885PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2540283203125 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 62.356 1 59.117 58.617 59.617 -3.2395 0 0 0 0.18705 1 11690 11690 25.399 1.3787 1 + 43541 25288 28922 28942 42917 42917 0.013190054429401243 SSLLWTLIPSK 11 Unmodified _SSLLWTLIPSK_ 0 0 0 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.757080078125 2 622.866089 1243.71762 0.091429 5.6948E-05 -1.2333 -0.00076818 -1.1419 -0.00071123 622.864404845945 60.758 0.14037 60.758 60.662 60.802 0 5 3 2 0 0 0 0.95337 1 11657 11657 1.1933 0 1 1260800 + 43542 12964 28923 28943 42918 42918 0.10551402779788077 SSLPLGLLPF 10 Unmodified _SSLPLGLLPF_ 0 0 0 REV__ENST00000329073.8_1_12:132627992-132628085:-|nuORF REV__ENST00000329073.8_1_12:132627992-132628085:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2825317382812 2 522.310418 1042.60628 0.36569 0.000191 -0.72267 -0.00037746 -0.35698 -0.00018645 522.3100410336982 40.555 0.53201 40.555 40.281 40.813 0 32 14 3 0 0 0 0.91149 1 7499 7499 1.6526 1.2519 1 8320700 + 43543 20600 28924 28944 42919 42919 0.08668388142518779 SSLRRREPERR 11 Unmodified _SSLRRREPERR_ 0 0 0 REV__PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant REV__PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25177001953125 3 481.274673 1440.80219 -0.60663 -0.00029196 2.7525 0.0013247 2.1458 0.0010327 481.27580192755136 14.475 0.179 13.302 13.21 13.389 -1.173 5 4 2 0 0 0 0.81736 1 1964 1964 1.3296 0.21989 1 136670 + 43544 15312 28925 28945 42920 42920 0.09942166369091865 SSLSFKSSN 9 Unmodified _SSLSFKSSN_ 0 0 0 ENST00000252674.8_2_19:6211645-6212743:-|nuORF ENST00000252674.8_2_19:6211645-6212743:-|nuORF ENST00000252674.8_2_19:6211645-6212743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7381591796875 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 60.311 1 56.997 56.497 57.497 -3.3139 0 0 0 0.19223 1 11231 11231 4.477 0 1 43545 8227 28926 28946 42921 42921 -0.018436997244634767 SSLSILLKQY 10 Unmodified _SSLSILLKQY_ 0 0 0 REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3366088867188 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 53.421 1 53.421 52.921 53.921 0 0 0 0 0.22588 1 10173 10173 7.2892 0.56607 1 + 43546 13386 28927 28947 42922 42922 0.09047140854363533 SSLSILLKQY 10 Unmodified _SSLSILLKQY_ 0 0 0 REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3363037109375 2 576.337164 1150.65977 0.043198 2.4897E-05 -1.0374 -0.00059788 -0.99419 -0.00057299 576.838883869355 64.63 0.17157 61.632 61.571 61.743 -2.9975 6 4 2 0 0 0 0.73842 1 12515 12515 7.2892 0 1 2305100 + 43547 13386 28927 28947 42923 42923 0.09047140854363533 SSLSILLKQY 10 Unmodified _SSLSILLKQY_ 0 0 0 REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3385620117188 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 59.559 1 56.245 55.745 56.745 -3.3139 0 0 0 0.22588 1 11076 11076 7.2892 0.56607 1 + 43548 13386 28927 28947 42924 42924 0.09047140854363533 SSLSILLKQY 10 Unmodified _SSLSILLKQY_ 0 0 0 REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3383178710938 2 576.337164 1150.65977 0.32196 0.00018556 1.3036 0.00075129 1.6255 0.00093684 576.8396472987012 66.3 0.45678 63.017 62.824 63.281 -3.2832 13 12 2 0 0 0 0.73842 1 12483 12483 7.2892 0 1 1411100 + 43549 13386 28927 28947 42925 42925 0.09047140854363533 SSLSILLKQY 10 Unmodified _SSLSILLKQY_ 0 0 0 REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant REV__CFAP43|p.V1381Wfs*7|1|0.2|ENSG00000197748|chr10:104143444-104143444|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 576.337164 1150.65977 0.043198 2.4897E-05 -1.0374 -0.00059788 -0.99419 -0.00057299 576.838883869355 64.63 0.17157 61.632 61.571 61.743 -2.9975 0 0 NaN 7.2892 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2305100 + 43550 13386 28927 28947 0.09047140854363533 SSLVQVTTETI 11 Unmodified _SSLVQVTTETI_ 0 0 0 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2598876953125 2 589.319168 1176.62378 0.43261 0.00025494 -0.25438 -0.00014991 0.17822 0.00010503 589.3189703389662 81.861 0.72982 78.304 77.959 78.689 -3.557 51 20 3 0 0 0 0.6353 1 15987 15987 16.149 1.7437 1 6657500 + 43551 15625 28928 28948 42926 42926 0.04253638886871158 SSLYKGPAGPS 11 Unmodified _SSLYKGPAGPS_ 0 0 0 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2822875976562 2 532.274564 1062.53457 -0.071792 -3.8213E-05 2.0658 0.0010996 1.994 0.0010613 532.2746057433005 57.015 0.62664 54.121 53.786 54.413 -2.8944 55 17 4 0 0 0 0.48798 1 10961 10961 23.79 2.0431 1 5133300 + 43552 15857 28929 28949 42927 42927 0.0058084871798200766 SSNFLDMRKY 10 Unmodified _SSNFLDMRKY_ 0 0 0 REV__tr|U7SXX4|U7SXX4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00916PE=3SV=1 REV__tr|U7SXX4|U7SXX4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00916PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7669677734375 2 630.805705 1259.59686 NaN NaN NaN NaN NaN NaN NaN 69.83 1 66.25 65.75 66.75 -3.5798 0 0 0 0.22588 1 13153 13153 10.074 1.9184 1 + 43553 25222 28930 28950 42928 42928 -0.022557482053116473 SSNPFLNRM 9 Unmodified _SSNPFLNRM_ 0 0 0 BCAS3-CA10|1|fusion;nc|ENSG00000154975|Q9NS85-2|CA10;ENSG00000154975|ENST00000451037|CA10 BCAS3-CA10|1|fusion BCAS3-CA10|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2759399414062 2 533.260933 1064.50731 NaN NaN NaN NaN NaN NaN NaN 119.4 1 114.88 114.38 115.38 -4.5221 0 0 0 0.19669 1 23544 23544 0.12781 0 1 43554 304 28931 28951 42929 42929 -0.02235958094047419 SSNPRENEY 9 Unmodified _SSNPRENEY_ 0 0 0 REV__SLC10A5|p.K53E|1|0.27|ENSG00000253598|chr8:81694816-81694816|T/C|missense_variant REV__SLC10A5|p.K53E|1|0.27|ENSG00000253598|chr8:81694816-81694816|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7713623046875 2 548.238709 1094.46287 0.22484 0.00012327 -1.5293 -0.00083841 -1.3044 -0.00071515 548.2378111331856 97.224 0.55301 93.127 92.839 93.392 -4.0978 27 15 2 0 0 0 0.71527 1 19067 19067 25.399 4.9457 1 2350800 + 43555 24621 28932 28952 42930 42930 -0.08058690706502603 SSNPRENEY 9 Unmodified _SSNPRENEY_ 0 0 0 REV__SLC10A5|p.K53E|1|0.27|ENSG00000253598|chr8:81694816-81694816|T/C|missense_variant REV__SLC10A5|p.K53E|1|0.27|ENSG00000253598|chr8:81694816-81694816|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7886962890625 2 548.238709 1094.46287 0.17589 9.6427E-05 -1.6153 -0.00088557 -1.4394 -0.00078914 548.2377391455389 97.342 0.71893 93.108 92.709 93.428 -4.2348 35 20 2 0 0 0 0.42289 1 18541 18541 25.399 0 1 2733200 + 43556 24621 28932 28952 42931 42931 -0.08058690706502603 SSNRGMGL 8 Unmodified _SSNRGMGL_ 0 0 0 REV__ENSG00000087152|ENST00000587097|ATXN7L3 REV__ENSG00000087152|ENST00000587097|ATXN7L3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.200927734375 2 411.200344 820.386136 NaN NaN NaN NaN NaN NaN NaN 77.764 1 74.301 73.801 74.801 -3.4633 0 0 0 0.21486 1 15183 15183 2.8892 0 1 + 43557 14495 28933 28953 42932 42932 -0.031241607366723656 SSNRLLYWL 9 Unmodified _SSNRLLYWL_ 0 0 0 ASIC2|p.T213Dfs*15|1|0.38|ENSG00000108684|chr17:33111986-33111987|-/C|frameshift_variant;ASIC2|p.T213Qfs*32|1|0.35|ENSG00000108684|chr17:33111987-33111987|C/-|frameshift_variant;ASIC2|p.K353Rfs*14|1|0.38|ENSG00000108684|chr17:33023999-33023999|T/-|frameshift_variant;ENSG00000108684|ENST00000225823|ASIC2 ASIC2|p.T213Dfs*15|1|0.38|ENSG00000108684|chr17:33111986-33111987|-/C|frameshift_variant ASIC2|p.T213Dfs*15|1|0.38|ENSG00000108684|chr17:33111986-33111987|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3121948242188 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 67.875 1 64.361 63.861 64.861 -3.5143 0 0 0 0.23508 1 12743 12743 8.5933 0.43775 1 43558 234 28934 28954 42933 42933 0.044211207429498245 SSPAPGTPA 9 Unmodified _SSPAPGTPA_ 0 0 0 FCGRT|p.G107Efs*29|1|0.3|ENSG00000104870|chr19:49514123-49514123|G/-|frameshift_variant;ENST00000595881.1_1_19:50017122-50017545:+|nuORF;ENST00000598936.1_1_19:50016657-50017545:+|nuORF;ENST00000595677.5_1_19:50017155-50024968:+|nuORF;ENST00000452439.1_1_19:50016657-50027781:+|nuORF;ENSG00000104870|ENST00000221466|FCGRT FCGRT|p.G107Efs*29|1|0.3|ENSG00000104870|chr19:49514123-49514123|G/-|frameshift_variant FCGRT|p.G107Efs*29|1|0.3|ENSG00000104870|chr19:49514123-49514123|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3873291015625 1 784.383559 783.376283 0.48026 0.00037671 0.37328 0.0002928 0.85354 0.0006695 784.3837993528858 22.557 0.66869 22.557 22.258 22.927 0 37 18 3 0 0 0 0.56709 1 3791 3791 1.2148 0 1 3659400 43559 2262 28935 28955 42934 42934 -0.02407025470415647 SSPAPTRVSLH 11 Unmodified _SSPAPTRVSLH_ 0 0 0 ENST00000468380.1_1_3:183165652-183170079:+|nuORF ENST00000468380.1_1_3:183165652-183170079:+|nuORF ENST00000468380.1_1_3:183165652-183170079:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3374633789062 2 576.312012 1150.60947 0.19379 0.00011168 -0.53182 -0.00030649 -0.33803 -0.00019481 576.3117603352754 60.286 0.31969 56.972 56.731 57.05 -3.3139 12 8 2 0 0 0 0.75285 1 11211 11211 8.1555 0.8663 1 828660 43560 10168 28936 28956 42935 42935 0.04019031249231375 SSPCKNGG 8 Unmodified _SSPCKNGG_ 0 0 0 NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1 NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2168273925781 2 375.16597 748.317388 NaN NaN NaN NaN NaN NaN NaN 70.321 1 66.742 66.242 67.242 -3.5798 0 0 0 0.2343 1 13252 13252 0.12286 0 1 43561 4744 28937 28957 42936 42936 -0.06683825036395774 SSPCKNGG 8 Unmodified _SSPCKNGG_ 0 0 0 NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1 NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2117004394531 2 375.16597 748.317388 NaN NaN NaN NaN NaN NaN NaN 86.432 1 82.703 82.203 83.203 -3.7289 0 0 0 0.2343 1 16527 16527 0.12286 0 1 43562 4744 28937 28957 42937 42937 -0.06683825036395774 SSPGKPRIYF 10 Unmodified _SSPGKPRIYF_ 0 0 0 L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|31|1|anti-sense L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|31|1|anti-sense L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|31|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3141479492188 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 56.156 1 52.967 52.467 53.467 -3.1895 0 0 0 0.22588 1 10401 10401 9.3831 2.0939 1 43563 12026 28938 28958 42938 42938 0.04421120742927087 SSPGNSFGNPP 11 Unmodified _SSPGNSFGNPP_ 0 0 0 REV__nc|ENSG00000079102|Q06455-6|RUNX1T1 REV__nc|ENSG00000079102|Q06455-6|RUNX1T1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2706298828125 2 530.738345 1059.46214 0.29554 0.00015686 -1.1622 -0.00061683 -0.86666 -0.00045997 530.7379425666813 37.878 0.7018 35.437 35.073 35.775 -2.4419 70 19 6 0 0 0 0.71397 1 6715 6715 10.8 0.72558 1 27512000 + 43564 14390 28939 28959 42939 42939 -0.06521485355574441 SSPLKPQTG 9 Unmodified _SSPLKPQTG_ 0 0 0 REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2234802246094 2 457.750724 913.486896 -0.13402 -6.135E-05 0.60769 0.00027817 0.47367 0.00021682 457.75096028743826 22.979 0.73768 21.525 21.226 21.963 -1.4535 47 20 4 0 0 0 0.66788 1 3719 3719 22.736 2.3217 1 10372000 + 43565 14319 28940 28960 42940 42940 0.02669194517818596 SSPNDQPTSA 10 Unmodified _SSPNDQPTSA_ 0 0 0 REV__KCTD8|p.E365D|1|0.36|ENSG00000183783|chr4:44175117-44175117|C/A|missense_variant REV__KCTD8|p.E365D|1|0.36|ENSG00000183783|chr4:44175117-44175117|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 335.8241271972656 3 335.149082 1002.42542 0.044677 1.4973E-05 2.3529 0.00078857 2.3976 0.00080355 335.48467263170494 51.149 0.66788 48.104 47.802 48.47 -3.0453 75 18 5 0 0 0 0.42535 1 9408 9408 1.9275 1.8636 1 2899000 + 43566 18864 28941 28961 42941 42941 -0.07569781972142664 SSPNDQPTSA 10 Unmodified _SSPNDQPTSA_ 0 0 0 REV__KCTD8|p.E365D|1|0.36|ENSG00000183783|chr4:44175117-44175117|C/A|missense_variant REV__KCTD8|p.E365D|1|0.36|ENSG00000183783|chr4:44175117-44175117|C/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 335.149082 1002.42542 0.044677 1.4973E-05 2.3529 0.00078857 2.3976 0.00080355 335.48467263170494 51.149 0.66788 48.104 47.802 48.47 -3.0453 -0.036972 -0.00022967 NaN 1.9275 75 18 5 NaN NaN NaN NaN 0 NaN NaN 0 2899000 + 43567 18864 28941 28961 -0.07569781972142664 SSPRHQFEY 9 Unmodified _SSPRHQFEY_ 0 0 0 REV__nc|ENSG00000172828|Q6UWW8-2|CES3 REV__nc|ENSG00000172828|Q6UWW8-2|CES3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3134155273438 2 575.767437 1149.52032 0.26553 0.00015288 1.8744 0.0010792 2.1399 0.0012321 575.76786879157 72.753 0.31044 72.753 72.575 72.886 0 11 8 2 0 0 0 0.54354 1 14126 14126 16.942 4.4107 1 1655900 + 43568 18311 28942 28962 42942 42942 -0.04845803710281871 SSPSPTPIG 9 Unmodified _SSPSPTPIG_ 0 0 0 REV__ENST00000357529.7_1_12:8850703-8852541:+|nuORF REV__ENST00000357529.7_1_12:8850703-8852541:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3768920898438 1 842.425424 841.418148 0.066911 5.6368E-05 0.14794 0.00012463 0.21485 0.000181 842.4255401438044 46.246 0.64989 43.379 42.996 43.646 -2.8666 29 18 2 0 0 0 0.22334 2 8366 8366;8418 36.044 0 1 1483600 + 43569 20826 28943 28963 42943;42944 42943 -0.00890469781882075 SSPSPTPIG 9 Unmodified _SSPSPTPIG_ 0 0 0 REV__ENST00000357529.7_1_12:8850703-8852541:+|nuORF REV__ENST00000357529.7_1_12:8850703-8852541:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 842.425424 841.418148 0.73648 0.00062043 -0.43099 -0.00036307 0.3055 0.00025736 842.4248729716461 43.197 0.61964 43.197 42.847 43.467 0 -0.062138 -0.00034714 NaN 36.044 20 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1309800 + 43570 20826 28943 28963 -0.00890469781882075 SSPSPTPIG 9 Unmodified _SSPSPTPIG_ 0 0 0 REV__ENST00000357529.7_1_12:8850703-8852541:+|nuORF REV__ENST00000357529.7_1_12:8850703-8852541:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 842.425424 841.418148 0.36073 0.00030389 -0.0071872 -6.0547E-06 0.35354 0.00029783 842.4253426430091 46.042 0.66034 43.201 42.861 43.521 -2.8409 -0.058024 9.8741E-06 NaN 36.044 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1793900 + 43571 20826 28943 28963 -0.00890469781882075 SSPSPTPIG 9 Unmodified _SSPSPTPIG_ 0 0 0 REV__ENST00000357529.7_1_12:8850703-8852541:+|nuORF REV__ENST00000357529.7_1_12:8850703-8852541:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 842.425424 841.418148 0.066911 5.6368E-05 0.14794 0.00012463 0.21485 0.000181 842.4255401438044 46.246 0.64989 43.379 42.996 43.646 -2.8666 0.12016 0.00014056 NaN 36.044 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1483600 + 43572 20826 28943 28963 -0.00890469781882075 SSPSRLLR 8 Unmodified _SSPSRLLR_ 0 0 0 REV__ENST00000581002.1_1_6:32938681-32939746:+|nuORF REV__ENST00000581002.1_1_6:32938681-32939746:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2255554199219 2 458.272158 914.529764 -0.17666 -8.0957E-05 0.92452 0.00042368 0.74786 0.00034272 458.27263350880764 43.508 0.38729 40.789 40.666 41.053 -2.7191 13 10 2 0 0 0 8448 1 8148 8148 0.063987 0 1 689170 + 43573 23239 28944 28964 42945 42945 0.06908009365918133 SSPSRLLR 8 Unmodified _SSPSRLLR_ 0 0 0 REV__ENST00000581002.1_1_6:32938681-32939746:+|nuORF REV__ENST00000581002.1_1_6:32938681-32939746:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.225341796875 2 458.272158 914.529764 -0.04447 -2.0379E-05 0.913 0.0004184 0.86853 0.00039802 458.2725190944972 43.474 0.17348 40.726 40.591 40.765 -2.7475 6 4 2 0 0 0 8448 1 7849 7849 0.0082765 0 1 492120 + 43574 23239 28944 28964 42946 42946 0.06908009365918133 SSPTAQPP 8 Unmodified _SSPTAQPP_ 0 0 0 REV__nc|ENSG00000161558|Q96AN5-2|TMEM143 REV__nc|ENSG00000161558|Q96AN5-2|TMEM143 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3871459960938 1 784.383559 783.376283 0.28989 0.00022738 0.24137 0.00018933 0.53126 0.00041671 784.3837015817328 40.257 1.3429 37.623 36.914 38.257 -2.6348 82 37 3 0 0 0 0.68128 1 7591 7591 16.942 2.3606 1 7948700 + 43575 17459 28945 28965 42947 42947 -0.02407025470415647 SSQGGTSKR 9 Unmodified _SSQGGTSKR_ 0 0 0 ENST00000469480.1_1_11:62342568-62343792:-|nuORF;ENSG00000149016|ENST00000476907|TUT1 ENST00000469480.1_1_11:62342568-62343792:-|nuORF ENST00000469480.1_1_11:62342568-62343792:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 303.15869140625 3 303.157912 906.451907 NaN NaN NaN NaN NaN NaN NaN 71.098 1 67.849 67.349 68.349 -3.2492 0 0 0 0.23508 1 13840 13840 1.0715 0.61312 1 43576 4767 28946 28966 42948 42948 -0.005060482901399155 SSQGYSHKTS 10 Unmodified _SSQGYSHKTS_ 0 0 0 REV__ITIH2|p.T368Hfs*32|2|0.36|ENSG00000151655|chr10:7727063-7727063|A/-|frameshift_variant REV__ITIH2|p.T368Hfs*32|2|0.36|ENSG00000151655|chr10:7727063-7727063|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2809448242188 2 541.249077 1080.4836 -0.12917 -6.9915E-05 0.78123 0.00042284 0.65206 0.00035292 541.249483675443 35.613 0.60452 33.219 32.915 33.52 -2.3938 25 16 2 0 0 0 0.44731 1 6577 6577 27.629 3.839 1 2541500 + 43577 23682 28947 28967 42949 42949 -0.0534210032685678 SSQGYSHKTS 10 Unmodified _SSQGYSHKTS_ 0 0 0 REV__ITIH2|p.T368Hfs*32|2|0.36|ENSG00000151655|chr10:7727063-7727063|A/-|frameshift_variant REV__ITIH2|p.T368Hfs*32|2|0.36|ENSG00000151655|chr10:7727063-7727063|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.260498046875 2 541.249077 1080.4836 0.22119 0.00011972 0.46341 0.00025082 0.6846 0.00037054 541.2492022215841 35.451 0.37825 33.198 33.055 33.433 -2.2527 19 10 2 0 0 0 0.44731 1 6283 6283 27.629 4.8925 1 1871600 + 43578 23682 28947 28967 42950 42950 -0.0534210032685678 SSQNMQFFY 9 Unmodified _SSQNMQFFY_ 0 0 0 REV__nc|ENSG00000174233|O43306-2|ADCY6 REV__nc|ENSG00000174233|O43306-2|ADCY6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3154296875 2 576.244949 1150.47534 NaN NaN NaN NaN NaN NaN NaN 58.188 1 58.188 57.688 58.688 0 0 0 0 0.23508 1 11132 11132 4.756 0 1 + 43579 18403 28948 28968 42951 42951 -0.09387370567833386 SSQRSTLTY 9 Unmodified _SSQRSTLTY_ 0 0 0 nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4 nc|ENSG00000144283|Q99569-2|PKP4 nc|ENSG00000144283|Q99569-2|PKP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2723388671875 2 521.76182 1041.50909 -0.59625 -0.0003111 0.8763 0.00045722 0.28005 0.00014612 521.7622360325649 37.741 0.62434 35.272 34.985 35.609 -2.4688 36 17 3 0 0 0 0.15274 1 6948 6948 43.772 14.691 1 2434400 43580 4546 28949 28969 42952 42952 -0.01000625804408628 SSQRSTLTY 9 Unmodified _SSQRSTLTY_ 0 0 0 nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4 nc|ENSG00000144283|Q99569-2|PKP4 nc|ENSG00000144283|Q99569-2|PKP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.263427734375 2 521.76182 1041.50909 -0.63739 -0.00033256 1.0761 0.00056145 0.43867 0.00022888 521.7623230661377 37.632 0.5504 35.284 35.028 35.578 -2.3479 36 15 3 0 0 0 0.10537 4 6696 6647;6649;6689;6696 51.63 22.334 1 2748600 43581 4546 28949 28969 42953;42954;42955;42956 42956 -0.01000625804408628 SSQRSTLTY 9 Unmodified _SSQRSTLTY_ 0 0 0 nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4 nc|ENSG00000144283|Q99569-2|PKP4 nc|ENSG00000144283|Q99569-2|PKP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.28076171875 2 521.76182 1041.50909 0.27178 0.0001418 0.14622 7.6291E-05 0.418 0.00021809 521.7618042751785 37.589 0.62095 35.252 34.981 35.602 -2.3375 39 17 3 0 0 0 0.088942 3 6665 6632;6665;6682 59.368 22.862 1 2211000 43582 4546 28949 28969 42957;42958;42959 42958 -0.01000625804408628 SSQRSTLTY 9 Unmodified _SSQRSTLTY_ 0 0 0 nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4 nc|ENSG00000144283|Q99569-2|PKP4 nc|ENSG00000144283|Q99569-2|PKP4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.76182 1041.50909 0.21797 0.00011373 0.17208 8.9785E-05 0.39005 0.00020351 521.7618272742092 35.307 0.59149 35.307 34.995 35.586 0 0.028116 -0.00040547 NaN 59.368 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2150300 43583 4546 28949 28969 -0.01000625804408628 SSQSCCCCS 9 Unmodified _SSQSCCCCS_ 0 0 0 REV__ENST00000399199.7_1_6:30646961-30647066:-|nuORF REV__ENST00000399199.7_1_6:30646961-30647066:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 303.084716796875 3 303.085274 906.233994 NaN NaN NaN NaN NaN NaN NaN 178.77 1 178.77 178.27 179.27 0 0 0 0 0.23508 1 37031 37031 0 0 1 + 43584 21339 28950 28970 42960 42960 -0.22287388862446278 SSQSCCCCS 9 Unmodified _SSQSCCCCS_ 0 0 0 REV__ENST00000399199.7_1_6:30646961-30647066:-|nuORF REV__ENST00000399199.7_1_6:30646961-30647066:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 303.08905029296875 3 303.085274 906.233994 NaN NaN NaN NaN NaN NaN NaN 179.18 1 174.27 173.77 174.77 -4.9114 0 0 0 0.23508 1 35752 35752 0 0 1 + 43585 21339 28950 28970 42961 42961 -0.22287388862446278 SSREKSFEEY 10 Unmodified _SSREKSFEEY_ 0 0 0 REV__CASP8|p.V205Gfs*13|1|0.13|ENSG00000064012|chr2:201274902-201274903|-/G|frameshift_variant REV__CASP8|p.V205Gfs*13|1|0.13|ENSG00000064012|chr2:201274902-201274903|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7694702148438 2 631.288399 1260.56225 0.46291 0.00029223 -0.16802 -0.00010607 0.29488 0.00018615 631.2882517152277 62.524 0.62526 59.284 59.002 59.627 -3.2395 45 17 3 0 0 0 0.84281 1 11710 11710 19.257 9.1831 1 7286000 + 43586 13265 28951 28971 42962 42962 -0.05761292812417196 SSREKSFEEY 10 Unmodified _SSREKSFEEY_ 0 0 0 REV__CASP8|p.V205Gfs*13|1|0.13|ENSG00000064012|chr2:201274902-201274903|-/G|frameshift_variant REV__CASP8|p.V205Gfs*13|1|0.13|ENSG00000064012|chr2:201274902-201274903|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 631.288399 1260.56225 1.0075 0.00063604 -0.8933 -0.00056393 0.11423 7.2112E-05 631.2878206625809 62.244 0.63153 59.282 58.974 59.606 -2.9614 -0.01957 -0.00069662 NaN 19.257 43 17 3 NaN NaN NaN NaN 0 NaN NaN 0 7918700 + 43587 13265 28951 28971 -0.05761292812417196 SSRGRRRGY 9 Unmodified _SSRGRRRGY_ 0 0 0 REV__nc|ENSG00000137449|Q7Z5Q1-7|CPEB2 REV__nc|ENSG00000137449|Q7Z5Q1-7|CPEB2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7723388671875 2 547.799937 1093.58532 NaN NaN NaN NaN NaN NaN NaN 72.138 1 68.511 68.011 69.011 -3.6275 0 0 0 0.23508 1 13618 13618 4.756 0.42677 1 + 43588 13569 28952 28972 42963 42963 0.04227235606231261 SSRHRFMFRLH 11 Unmodified _SSRHRFMFRLH_ 0 0 0 REV__DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant REV__DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 737.3853759765625 2 737.385854 1472.75715 NaN NaN NaN NaN NaN NaN NaN 54.376 1 51.492 50.992 51.992 -2.8837 0 0 0 0.23698 1 10377 10377 1.3295 0 1 + 43589 13735 28953 28973 42964 42964 0.039686443022219464 SSRKSWNQKHF 11 Unmodified _SSRKSWNQKHF_ 0 0 0 CYLC1|p.N205Ffs*7|1|0.15|ENSG00000183035|chrX:83873321-83873322|AA/-|frameshift_variant;CYLC1|p.N291Efs*7|1|0.24|ENSG00000183035|chrX:83873571-83873572|-/A|frameshift_variant;CYLC1|p.D425Gfs*2|1|0.26|ENSG00000183035|chrX:83873972-83873973|-/A|frameshift_variant;CYLC1|p.K424Rfs*69|2|0.17|ENSG00000183035|chrX:83873973-83873973|A/-|frameshift_variant;ENSG00000183035|ENST00000329312|CYLC1 CYLC1|p.N205Ffs*7|1|0.15|ENSG00000183035|chrX:83873321-83873322|AA/-|frameshift_variant CYLC1|p.N205Ffs*7|1|0.15|ENSG00000183035|chrX:83873321-83873322|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 702.8604736328125 2 702.860192 1403.70583 NaN NaN NaN NaN NaN NaN NaN 55.515 1 52.344 51.844 52.844 -3.1711 0 0 0 0.23379 1 10264 10264 5.2969 1.3525 1 43590 763 28954 28974 42965 42965 0.02012598809164956 SSRLAGKLRY 10 Unmodified _SSRLAGKLRY_ 0 0 0 ENSG00000140598|ENST00000268206|EFL1 ENSG00000140598|ENST00000268206|EFL1 ENSG00000140598|ENST00000268206|EFL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3360595703125 2 575.838197 1149.66184 0.31477 0.00018126 0.071358 4.1091E-05 0.38613 0.00022235 575.8389163574911 65.062 0.2416 61.604 61.404 61.646 -3.4581 9 6 2 0 0 0 0.73842 1 12148 12148 7.2892 0 1 1264900 43591 4316 28955 28975 42966 42966 0.09299614382848631 SSRPKKLI 8 Unmodified _SSRPKKLI_ 0 0 0 REV__PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant REV__PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647644042969 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 140.04 1 135.19 134.69 135.69 -4.8492 0 0 0 0.2396 1 27003 27003 0.30703 0 1 + 43592 24433 28956 28976 42967 42967 0.11986056922410171 SSRRIVPHSL 10 Unmodified _SSRRIVPHSL_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3367309570312 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 57.106 1 57.106 56.606 57.606 0 0 0 0 0.22588 1 10913 10913 10.824 0.75 1 + 43593 14487 28957 28977 42968 42968 0.08778730240078403 SSRSKFIGY 9 Unmodified _SSRSKFIGY_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENST00000539541.1_1_1:110586362-110587715:+|nuORF;ENST00000473429.5_1_1:110584363-110592127:+|nuORF;nc|ENSG00000143093|Q5VSL9-3|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.271240234375 2 522.777274 1043.53999 -0.034041 -1.7796E-05 0.80171 0.00041912 0.76767 0.00040132 522.7771843346873 44.516 0.80637 41.768 41.361 42.167 -2.7475 50 22 3 0 0 0 0.86532 1 8138 8138 2.0598 0 1 1837200 43594 4452 28958 28978 42969 42969 0.019965723004588654 SSRSPLWS 8 Unmodified _SSRSPLWS_ 0 0 0 ENST00000560616.5_3_15:91450651-91453805:+|nuORF ENST00000560616.5_3_15:91450651-91453805:+|nuORF ENST00000560616.5_3_15:91450651-91453805:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353515625 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 16.339 1 15.117 14.617 15.617 -1.2219 0 0 0 0.2396 1 2345 2345 0.12286 0 1 43595 11291 28959 28979 42970 42970 -0.006559587964375169 SSSAIPGG 8 Unmodified _SSSAIPGG_ 0 0 0 nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54 nc|ENSG00000143952|Q9P1Q0-3|VPS54 nc|ENSG00000143952|Q9P1Q0-3|VPS54 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 338.1705017089844 2 338.169036 674.323519 NaN NaN NaN NaN NaN NaN NaN 37.948 1 35.61 35.11 36.11 -2.3375 0 0 0 0.2396 1 6734 6734 0.30703 0 1 43596 4533 28960 28980 42971 42971 -0.02666983533219991 SSSCPGSH 8 Unmodified _SSSCPGSH_ 0 0 0 REV__ENST00000310564.10_2_7:43690152-43769078:-|nuORF REV__ENST00000310564.10_2_7:43690152-43769078:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21856689453125 2 381.147778 760.281002 NaN NaN NaN NaN NaN NaN NaN 50.181 1 47.175 46.675 47.675 -3.0068 0 0 0 0.21486 1 9217 9217 9.3474 3.587 1 + 43597 20481 28961 28981 42972 42972 -0.10872701933112694 SSSDCSSMQDM 11 Unmodified _SSSDCSSMQDM_ 0 0 0 REV__nc|ENSG00000145088|Q96CJ1-2|EAF2 REV__nc|ENSG00000145088|Q96CJ1-2|EAF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 393.30206298828125 3 393.131718 1176.37332 0.52179 0.00020513 0.65936 0.00025921 1.1811 0.00046435 393.13202000384024 122.24 0.44602 117.55 117.3 117.75 -4.6873 17 12 2 0 0 0 0.96216 1 23465 23465 0.08335 0 1 1236500 + 43598 16820 28962 28982 42973 42973 -0.20780772764055655 SSSGESAPDSY 11 Unmodified _SSSGESAPDSY_ 0 0 0 ENSG00000139209|ENST00000266579|SLC38A4;SLC38A4|p.N218Kfs*21|1|0.34|ENSG00000139209|chr12:46779784-46779785|-/T|frameshift_variant ENSG00000139209|ENST00000266579|SLC38A4 ENSG00000139209|ENST00000266579|SLC38A4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.783935546875 2 543.714733 1085.41491 0.031936 1.7364E-05 -0.84365 -0.0004587 -0.81171 -0.00044134 543.7142681036639 52.343 0.68987 49.461 49.136 49.826 -2.8824 47 19 3 0 0 0 0.24161 1 9969 9969 49.933 9.9833 1 11481000 43599 4230 28963 28983 42974 42974 -0.12437809417224344 SSSGESAPDSY 11 Unmodified _SSSGESAPDSY_ 0 0 0 ENSG00000139209|ENST00000266579|SLC38A4;SLC38A4|p.N218Kfs*21|1|0.34|ENSG00000139209|chr12:46779784-46779785|-/T|frameshift_variant ENSG00000139209|ENST00000266579|SLC38A4 ENSG00000139209|ENST00000266579|SLC38A4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7933349609375 2 543.714733 1085.41491 0.066579 3.62E-05 -0.80908 -0.00043991 -0.7425 -0.00040371 543.7142419411176 52.482 0.70017 49.394 49.061 49.761 -3.0876 45 19 3 0 0 0 0.40042 1 9689 9689 41.84 9.0539 1 7946600 43600 4230 28963 28983 42975 42975 -0.12437809417224344 SSSGGGGGG 9 Unmodified _SSSGGGGGG_ 0 0 0 ENSG00000171403|ENST00000246662|KRT9;PRRC2A|p.G1884Afs*12|1|0.18|ENSG00000204469|chr6:31636228-31636228|C/-|frameshift_variant;PRRC2A|p.G1731Wfs*35|1|0.59|ENSG00000204469|chr6:31635155-31635156|-/C|frameshift_variant;PRRC2A|p.K1685Rfs*9|1|0.21|ENSG00000204469|chr6:31634864-31634864|C/-|frameshift_variant;PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant;ENSG00000120738|ENST00000239938|EGR1;ENST00000545606.5_1_12:67663381-67663543:+|nuORF;ENST00000487509.6_1_16:31191511-31196501:+|nuORF;ENST00000511242.1_1_5:112783941-112824318:-|nuORF;ENST00000405737.2_2_13:41556342-41635296:-|nuORF;ENSG00000204469|ENST00000376033|PRRC2A;ENSG00000089280|ENST00000254108|FUS;nc|ENSG00000089280|P35637-2|FUS;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A ENSG00000171403|ENST00000246662|KRT9;REV__nc|ENSG00000103342|P15170-2|GSPT1;REV__ENSG00000130449|ENST00000252744|ZSWIM6;ENSG00000089280|ENST00000254108|FUS;nc|ENSG00000204469|P48634-2|PRRC2A;REV__ENST00000405737.2_2_13:41556342-41635296:-|nuORF ENSG00000171403|ENST00000246662|KRT9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.755126953125 1 622.242709 621.235432 0.40431 0.00025158 -3.7396 -0.0023269 -3.3353 -0.0020753 622.2397517214905 151.64 0.21387 151.64 151.55 151.76 0 7 5 2 0 0 0 0.88478 1 30365 30365 0 0 1 1445200 43601 6142;14876;16005;1759;12560;21384 28964 28984 42976 42976 -0.09033604123851546 SSSHRKKGKH 10 Unmodified _SSSHRKKGKH_ 0 0 0 REV__ITGB1BP1|p.R3H|1|0.05|ENSG00000119185|chr2:9418690-9418690|C/T|missense_variant REV__ITGB1BP1|p.R3H|1|0.05|ENSG00000119185|chr2:9418690-9418690|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3356323242188 2 576.323245 1150.63194 NaN NaN NaN NaN NaN NaN NaN 66.189 1 62.693 62.193 63.193 -3.4965 0 0 0 0.22588 1 12401 12401 6.7232 0.51738 1 + 43602 23680 28965 28985 42977 42977 0.06264675437523692 SSSIFSIFR 9 Unmodified _SSSIFSIFR_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|349|3|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|349|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.259765625 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 148.64 1 148.64 148.14 149.14 0 0 0 0 0.23508 1 29750 29750 9.3831 2.0939 1 + 43603 23761 28966 28986 42978 42978 0.025174564432290936 SSSKGDLHWCN 11 Unmodified _SSSKGDLHWCN_ 0 0 0 REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.5447082519531 3 411.84875 1232.52442 0.53783 0.00022151 -0.16973 -6.9902E-05 0.36811 0.0001516 411.84871512845444 28.885 0.62318 26.929 26.603 27.226 -1.9561 39 17 3 0 0 0 0.88957 1 5213 5213 3.0723 2.11 1 2689000 + 43604 22754 28967 28987 42979 42979 -0.08254082278858732 SSSKGDLHWCN 11 Unmodified _SSSKGDLHWCN_ 0 0 0 REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 411.84875 1232.52442 0.087544 3.6055E-05 0.4707 0.00019386 0.55825 0.00022991 411.8489209976236 27.051 0.57869 27.051 26.773 27.351 0 0.11766 0.00041509 NaN 3.0723 43 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5569200 + 43605 22754 28967 28987 -0.08254082278858732 SSSKGDLHWCN 11 Unmodified _SSSKGDLHWCN_ 0 0 0 REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 411.84875 1232.52442 0.27057 0.00011143 0.031967 1.3166E-05 0.30254 0.0001246 411.8487231153433 28.693 0.62937 26.938 26.665 27.294 -1.7552 0.0041634 -0.00012699 NaN 3.0723 48 17 4 NaN NaN NaN NaN 0 NaN NaN 0 3676500 + 43606 22754 28967 28987 -0.08254082278858732 SSSKGDLHWCN 11 Unmodified _SSSKGDLHWCN_ 0 0 0 REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 411.84875 1232.52442 -0.025351 -1.0441E-05 0.31071 0.00012796 0.28536 0.00011752 411.84886632967806 28.812 0.55948 26.816 26.519 27.078 -1.9962 -0.11742 0.00021741 NaN 3.0723 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2104000 + 43607 22754 28967 28987 -0.08254082278858732 SSSKIFFK 8 Unmodified _SSSKIFFK_ 0 0 0 nc|ENSG00000172159|A2A2Y4-5|FRMD3;ENSG00000172159|ENST00000304195|FRMD3;nc|ENSG00000172159|A2A2Y4-3|FRMD3;FRMD3|p.I435Nfs*10|1|0.21|ENSG00000172159|chr9:83248408-83248409|-/T|frameshift_variant;nc|ENSG00000172159|A2A2Y4-2|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1995544433594 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 121.27 1 116.72 116.22 117.22 -4.5476 0 0 0 0.21486 1 23905 23905 1.6526 0 1 43608 6196 28968 28988 42980 42980 0.043909729028428046 SSSKKSKV 8 Unmodified _SSSKKSKV_ 0 0 0 ENST00000560957.1_1_15:86225432-86228206:+|nuORF ENST00000560957.1_1_15:86225432-86228206:+|nuORF ENST00000560957.1_1_15:86225432-86228206:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2350769042969 2 425.753267 849.491981 0.062311 2.6529E-05 -1.0911 -0.00046453 -1.0288 -0.000438 425.75273958305166 142.84 0.73453 137.81 137.51 138.25 -5.0261 44 20 3 0 0 0 1.0271 1 27589 27589 0 0 1 8870700 43609 11295 28969 28989 42981 42981 0.06121498380423418 SSSKKSKV 8 Unmodified _SSSKKSKV_ 0 0 0 ENST00000560957.1_1_15:86225432-86228206:+|nuORF ENST00000560957.1_1_15:86225432-86228206:+|nuORF ENST00000560957.1_1_15:86225432-86228206:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 425.753267 849.491981 -0.09607 -4.0902E-05 -0.82713 -0.00035215 -0.9232 -0.00039306 425.75285642071736 142.49 0.52054 137.83 137.58 138.1 -4.656 0.033011 9.3449E-05 NaN 0 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2770600 43610 11295 28969 28989 0.06121498380423418 SSSLLVHMGL 10 Unmodified _SSSLLVHMGL_ 0 0 0 REV__ENST00000591160.1_1_19:5903831-5904008:-|nuORF REV__ENST00000591160.1_1_19:5903831-5904008:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2809448242188 2 522.281334 1042.54812 NaN NaN NaN NaN NaN NaN NaN 150.99 1 145.82 145.32 146.32 -5.1759 0 0 0 0.22588 1 29268 29268 7.9102 0.62092 1 + 43611 23331 28970 28990 42982 42982 0.02854383225599122 SSSNRSNNN 9 Unmodified _SSSNRSNNN_ 0 0 0 ENST00000359486.7_2_22:42610329-42610413:-|nuORF ENST00000359486.7_2_22:42610329-42610413:-|nuORF ENST00000359486.7_2_22:42610329-42610413:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.21417236328125 2 490.213026 978.411499 NaN NaN NaN NaN NaN NaN NaN 7.374 1 6.3294 5.8294 6.8294 -1.0446 0 0 0 0.23508 1 622 622 0 0 1 43612 9000 28971 28991 42983 42983 -0.07857014680575958 SSSPGSSLFS 10 Unmodified _SSSPGSSLFS_ 0 0 0 SYN3|p.F52del|1|0.22|ENSG00000185666|chr22:33006506-33006508|AGA/-|inframe_deletion SYN3|p.F52del|1|0.22|ENSG00000185666|chr22:33006506-33006508|AGA/-|inframe_deletion SYN3|p.F52del|1|0.22|ENSG00000185666|chr22:33006506-33006508|AGA/-|inframe_deletion MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7231750488281 2 478.221997 954.429441 -0.068337 -3.268E-05 0.17054 8.1557E-05 0.1022 4.8877E-05 478.2220308468999 32.755 0.62608 32.755 32.399 33.025 0 40 17 4 0 0 0 0.34654 1 5956 5956 34.402 1.616 1 5939200 43613 25803 28972 28992 42984 42984 -0.04959692478416855 SSSPGSSLFS 10 Unmodified _SSSPGSSLFS_ 0 0 0 SYN3|p.F52del|1|0.22|ENSG00000185666|chr22:33006506-33006508|AGA/-|inframe_deletion SYN3|p.F52del|1|0.22|ENSG00000185666|chr22:33006506-33006508|AGA/-|inframe_deletion SYN3|p.F52del|1|0.22|ENSG00000185666|chr22:33006506-33006508|AGA/-|inframe_deletion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7234191894531 2 478.221997 954.429441 0.1666 7.9673E-05 -0.046174 -2.2082E-05 0.12043 5.7591E-05 478.22196724218344 34.899 0.62822 32.646 32.324 32.952 -2.2527 41 17 3 0 0 0 0.34654 2 6125 6125;6138 34.402 3.7652 1 4220400 43614 25803 28972 28992 42985;42986 42985 -0.04959692478416855 SSSPGSSLFS 10 Unmodified _SSSPGSSLFS_ 0 0 0 SYN3|p.F52del|1|0.22|ENSG00000185666|chr22:33006506-33006508|AGA/-|inframe_deletion SYN3|p.F52del|1|0.22|ENSG00000185666|chr22:33006506-33006508|AGA/-|inframe_deletion SYN3|p.F52del|1|0.22|ENSG00000185666|chr22:33006506-33006508|AGA/-|inframe_deletion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7235412597656 2 478.221997 954.429441 0.34843 0.00016663 -0.17126 -8.1901E-05 0.17717 8.4726E-05 478.22187615007914 34.908 0.55302 32.631 32.308 32.861 -2.2766 39 15 3 0 0 0 0.34654 1 6132 6132 34.402 3.7652 1 3655000 43615 25803 28972 28992 42987 42987 -0.04959692478416855 SSSRSGKG 8 Unmodified _SSSRSGKG_ 0 0 0 REV__nc|ENSG00000172493|P51825|AFF1 REV__nc|ENSG00000172493|P51825|AFF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 383.2000732421875 2 383.196116 764.37768 NaN NaN NaN NaN NaN NaN NaN 53.416 1 50.328 49.828 50.828 -3.0876 0 0 0 0.2396 1 9833 9833 0.12286 0 1 + 43616 18289 28973 28993 42988 42988 -0.013933913816572385 SSSSAYKAK 9 Unmodified _SSSSAYKAK_ 0 0 0 REV__KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant REV__KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2416076660156 2 464.740357 927.46616 -0.02779 -1.2915E-05 -0.63319 -0.00029427 -0.66098 -0.00030718 464.74006698050044 48.157 0.31488 45.215 45.11 45.425 -2.9421 11 8 2 0 0 0 0.45972 1 8795 8795 8.1555 0 1 283010 + 43617 14202 28974 28994 42989 42989 -0.0004739586187270106 SSSSDSEEEGY 11 Unmodified _SSSSDSEEEGY_ 0 0 0 ENSG00000139174|ENST00000345127|PRICKLE1 ENSG00000139174|ENST00000345127|PRICKLE1 ENSG00000139174|ENST00000345127|PRICKLE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2520141601562 2 588.712387 1175.41022 0.70378 0.00041432 -0.64194 -0.00037792 0.061833 3.6402E-05 588.7119240176168 87.463 0.85011 83.467 83.018 83.868 -3.9953 77 23 4 0 0 0 0.7876 1 16644 16644 5.2969 1.7004 1 22798000 43618 4228 28975 28995 42990 42990 -0.1704673835063204 SSSSKLKL 8 Unmodified _SSSSKLKL_ 0 0 0 REV__ENST00000593279.5_1_19:11670316-11674898:+|nuORF REV__ENST00000593279.5_1_19:11670316-11674898:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2380065917969 2 425.255643 848.496732 NaN NaN NaN NaN NaN NaN NaN 25.08 1 23.546 23.046 24.046 -1.5342 0 0 0 0.21486 1 4107 4107 2.3027 0 1 + 43619 23297 28976 28996 42991 42991 0.06642382523170909 SSSSQSQSSY 10 Unmodified _SSSSQSQSSY_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;ENST00000519528.1_1_8:103299768-103305927:-|nuORF nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6978149414062 2 524.2149 1046.41525 -0.20699 -0.00010851 -1.0415 -0.00054596 -1.2485 -0.00065447 524.2143063327864 85.375 0.87896 81.711 81.231 82.11 -3.6641 59 24 3 0 0 0 0.79872 1 16685 16685 25.399 10.818 1 6669600 43620 2240 28977 28997 42992 42992 -0.1061038969735364 SSSSRDSESWD 11 Unmodified _SSSSRDSESWD_ 0 0 0 ENST00000549913.6_1_12:113307544-113334582:+|nuORF;nc|ENSG00000089169|Q9Y2J0-2|RPH3A;ENSG00000089169|ENST00000389385|RPH3A ENST00000549913.6_1_12:113307544-113334582:+|nuORF ENST00000549913.6_1_12:113307544-113334582:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7713623046875 2 621.747096 1241.47964 1.9172 0.001192 -1.1048 -0.0006869 0.81238 0.00050509 621.746643366627 24.156 0.83611 22.603 22.252 23.088 -1.5532 48 23 3 0 0 0 0.78434 1 4235 4235 5.7319 1.7875 1 1304000 43621 1755 28978 28998 42993 42993 -0.1314423461124079 SSSSSCCTTN 10 Unmodified _SSSSSCCTTN_ 0 0 0 REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 326.1160583496094 3 326.116396 975.32736 NaN NaN NaN NaN NaN NaN NaN 169.53 1 164.65 164.15 165.15 -4.873 0 0 0 0.22588 1 33488 33488 0 0 1 + 43622 15103 28979 28999 42994 42994 -0.16129049884011692 SSSTDSETLRY 11 Unmodified _SSSTDSETLRY_ 0 0 0 SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2 SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7710571289062 2 623.283314 1244.55207 0.25684 0.00016008 -0.70449 -0.0004391 -0.44765 -0.00027902 623.2830685961479 48.801 0.4855 45.802 45.616 46.102 -2.999 21 13 2 0 0 0 0.091154 1 8931 8931 70.929 44.045 1 1933300 43623 4089 28980 29000 42995 42995 -0.06041900537661604 SSSTDSETLRY 11 Unmodified _SSSTDSETLRY_ 0 0 0 SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2 SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76513671875 2 623.283314 1244.55207 0.12213 7.6121E-05 -0.44148 -0.00027517 -0.31935 -0.00019904 623.2831075091804 48.844 0.44972 45.837 45.622 46.071 -3.0068 22 12 2 0 0 0 0.28959 1 8918 8918 51.488 20.22 1 1097900 43624 4089 28980 29000 42996 42996 -0.06041900537661604 SSSTDSETLRY 11 Unmodified _SSSTDSETLRY_ 0 0 0 SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENSG00000137501|ENST00000359152|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2 SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 623.283314 1244.55207 0.87293 0.00054408 -0.91302 -0.00056907 -0.040094 -2.499E-05 623.2825919983994 48.794 0.45103 45.925 45.693 46.144 -2.869 0.070084 -0.0002291 NaN 70.929 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1069600 43625 4089 28980 29000 -0.06041900537661604 SSSVHPRRLL 10 Unmodified _SSSVHPRRLL_ 0 0 0 ENST00000464180.1_1_17:39976744-39976852:+|nuORF ENST00000464180.1_1_17:39976744-39976852:+|nuORF ENST00000464180.1_1_17:39976744-39976852:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3355102539062 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 58.743 1 55.492 54.992 55.992 -3.2517 0 0 0 0.22588 1 10919 10919 7.2892 0 1 43626 10106 28981 29001 42997 42997 0.08778730240078403 SSSVHPRRLL 10 Unmodified _SSSVHPRRLL_ 0 0 0 ENST00000464180.1_1_17:39976744-39976852:+|nuORF ENST00000464180.1_1_17:39976744-39976852:+|nuORF ENST00000464180.1_1_17:39976744-39976852:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3358764648438 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 58.937 1 55.731 55.231 56.231 -3.2052 0 0 0 0.22588 1 11003 11003 7.2892 0 1 43627 10106 28981 29001 42998 42998 0.08778730240078403 SSSYPISPA 9 Unmodified _SSSYPISPA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.3946533203125 1 908.435989 907.428712 0.24342 0.00022113 -0.0019198 -1.744E-06 0.2415 0.00021939 908.4358783635411 115.74 0.85692 111.27 110.88 111.74 -4.4726 58 24 3 0 0 0 0.62102 1 22760 22760 11.64 0.52583 1 25132000 43628 6567 28982 29002 42999 42999 -0.028704871274612742 SSSYRESKT 9 Unmodified _SSSYRESKT_ 0 0 0 REV__ENSG00000103319|ENST00000263026|EEF2K REV__ENSG00000103319|ENST00000263026|EEF2K MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6953125 2 522.751453 1043.48835 0.50746 0.00026528 -2.332 -0.0012191 -1.8245 -0.00095378 522.750991844128 104.5 0.82597 104.5 104.04 104.86 0 58 23 3 0 0 0 0.68435 1 20502 20502 7.2892 0.56607 1 7139700 + 43629 14874 28983 29003 43000 43000 -0.031652161840838744 SSTCSCCWCC 10 Unmodified _SSTCSCCWCC_ 0 0 0 ENST00000566894.1_1_15:75194962-75197073:-|nuORF;ENSG00000178761|ENST00000357635|FAM219B ENST00000566894.1_1_15:75194962-75197073:-|nuORF ENST00000566894.1_1_15:75194962-75197073:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.277587890625 2 541.647058 1081.27956 0.086001 4.6582E-05 -0.35708 -0.00019341 -0.27108 -0.00014683 541.6455995297098 130.85 0.13962 126.02 125.92 126.06 -4.8355 5 3 2 0 0 0 1.1347 1 25114 25114 0 0 1 1041600 43630 6592 28984 29004 43001 43001 -0.25782486671710103 SSTDQKFLR 9 Unmodified _SSTDQKFLR_ 0 0 0 REV__ENST00000495714.1_1_7:36447357-36456706:+|nuORF REV__ENST00000495714.1_1_7:36447357-36456706:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2835083007812 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 138.41 1 138.41 137.91 138.91 0 0 0 0 0.21844 1 27479 27479 18.146 8.7632 1 + 43631 13936 28985 29005 43002 43002 0.01931653466544958 SSTEEKTTLK 10 Unmodified _SSTEEKTTLK_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21051025390625 3 375.199554 1122.57683 -0.11514 -4.32E-05 1.6529 0.00062017 1.5378 0.00057697 375.20016305786277 25.02 0.47259 25.02 24.681 25.153 0 17 13 2 0 0 0 0.75844 1 4266 4266 3.0723 1.4196 1 564600 43632 4552 28986 29006 43003 43003 0.020447793357107003 SSTEEKTTLK 10 Unmodified _SSTEEKTTLK_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2060546875 3 375.199554 1122.57683 0.16046 6.0204E-05 1.0566 0.00039645 1.2171 0.00045665 375.1999874035007 26.665 0.31829 25.03 24.789 25.107 -1.6347 13 8 2 0 0 0 0.75917 1 4390 4390 2.8433 1.1907 1 780410 43633 4552 28986 29006 43004 43004 0.020447793357107003 SSTGSIAC 8 Unmodified _SSTGSIAC_ 0 0 0 REV__ENSG00000147251|ENST00000276202|DOCK11 REV__ENSG00000147251|ENST00000276202|DOCK11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 363.1507873535156 2 363.160354 724.306154 NaN NaN NaN NaN NaN NaN NaN 178.89 1 173.99 173.49 174.49 -4.9088 0 0 0 0.21486 1 35692 35692 0.79363 0 1 + 43634 16930 28987 29007 43005 43005 -0.06702647130566675 SSTGSTPFPY 10 Unmodified _SSTGSTPFPY_ 0 0 0 NCOR2|p.A2454T|1|0.49|ENSG00000196498|chr12:124326194-124326194|C/T|missense_variant NCOR2|p.A2454T|1|0.49|ENSG00000196498|chr12:124326194-124326194|C/T|missense_variant NCOR2|p.A2454T|1|0.49|ENSG00000196498|chr12:124326194-124326194|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.277587890625 2 522.237647 1042.46074 -0.71724 -0.00037457 -2.8563 -0.0014917 -3.5736 -0.0018662 522.2359102889073 39.845 0.18018 37.306 37.143 37.323 -2.5398 7 4 2 0 0 0 0.79872 1 7118 7118 13.906 0 1 1132500 43635 12677 28988 29008 43006 43006 -0.05879119444330172 SSTISEDASPW 11 Unmodified _SSTISEDASPW_ 0 0 0 REV__IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant REV__IMPG2|p.F1232Lfs*2|1|0.3|ENSG00000081148|chr3:101228814-101228814|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2608642578125 2 590.26185 1178.50915 NaN NaN NaN NaN NaN NaN NaN 139.54 1 139.54 139.04 140.04 0 0 0 0 0.22501 1 27740 27740 12.241 1.4167 1 + 43636 14426 28989 29009 43007 43007 -0.072966705951103 SSTLSDGTILT 11 Unmodified _SSTLSDGTILT_ 0 0 0 REV__nc|ENSG00000160867|P22455-2|FGFR4 REV__nc|ENSG00000160867|P22455-2|FGFR4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7827758789062 2 547.782418 1093.55028 NaN NaN NaN NaN NaN NaN NaN 49.29 1 46.283 45.783 46.783 -3.0068 0 0 0 0.16232 1 9040 9040 26.268 0 1 + 43637 24121 28990 29010 43008 43008 0.007250904443935724 SSTPKRSPVK 10 Unmodified _SSTPKRSPVK_ 0 0 0 ENST00000529262.5_1_6:135518089-135539115:+|nuORF;nc|ENSG00000118513|P10242-8|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB ENST00000529262.5_1_6:135518089-135539115:+|nuORF ENST00000529262.5_1_6:135518089-135539115:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.783935546875 2 543.81693 1085.61931 0.030008 1.6319E-05 4.4228 0.0024052 4.4528 0.0024215 544.3216690907667 52.324 0.41766 49.441 49.273 49.691 -2.8824 24 11 3 0 0 0 0.87854 1 9969 9969 5.7319 0 1 1571200 43638 3041 28991 29011 43009 43009 0.07992219254606425 SSTQSLHGATP 11 Unmodified _SSTQSLHGATP_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16;REV__MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7811279296875 2 543.264727 1084.5149 0.22088 0.00011999 0.22514 0.00012231 0.44602 0.00024231 543.2647602531777 33.401 1.3895 31.083 30.559 31.949 -2.3175 92 39 3 0 0 0 0.51138 1 6155 6155 0.2986 0 1 2125600 + 43639 18720;23888 28992 29012 43010 43010 -0.0239752729276006 SSTRKLRL 8 Unmodified _SSTRKLRL_ 0 0 0 REV__APBB3|p.M441V|1|0.21|ENSG00000113108|chr5:140558725-140558725|T/C|missense_variant REV__APBB3|p.M441V|1|0.21|ENSG00000113108|chr5:140558725-140558725|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77069091796875 2 480.801083 959.587613 0.21119 0.00010154 0.10989 5.2835E-05 0.32108 0.00015437 480.80104403592907 161.07 1.0284 155.84 155.33 156.36 -5.2298 79 28 4 0 0 0 8448 1 31348 31348 0.62683 0.49901 1 26114000 + 43640 13080 28993 29013 43011 43011 0.1062027129131593 SSTRKLRL 8 Unmodified _SSTRKLRL_ 0 0 0 REV__APBB3|p.M441V|1|0.21|ENSG00000113108|chr5:140558725-140558725|T/C|missense_variant REV__APBB3|p.M441V|1|0.21|ENSG00000113108|chr5:140558725-140558725|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77227783203125 2 480.801083 959.587613 0.39404 0.00018946 -0.13477 -6.4798E-05 0.25927 0.00012466 480.8008900294023 160.94 1.0892 155.68 155.25 156.33 -5.2527 84 30 4 0 0 0 8448 2 31157 31157;31245 0.62683 0.37535 1 37787000 + 43641 13080 28993 29013 43012;43013 43012 0.1062027129131593 SSTVEAPSAL 10 Unmodified _SSTVEAPSAL_ 0 0 0 REV__nc|ENSG00000141448|Q92908-2|GATA6 REV__nc|ENSG00000141448|Q92908-2|GATA6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23553466796875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 66.181 1 66.181 65.681 66.681 0 0 0 0 0.22518 1 12777 12777 22.736 3.4793 1 + 43642 16627 28994 29014 43014 43014 -0.0054283292729451205 SSTVQNGG 8 Unmodified _SSTVQNGG_ 0 0 0 tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2120056152344 2 375.17485 748.335146 NaN NaN NaN NaN NaN NaN NaN 63.758 1 60.501 60.001 61.001 -3.2567 0 0 0 0.23782 1 11964 11964 0.12286 0 1 43643 26274 28995 29015 43015 43015 -0.04908786509895435 SSTWGSLKQA 10 Unmodified _SSTWGSLKQA_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2706909179688 2 532.772188 1063.52982 -0.00049477 -2.636E-07 -2.5056 -0.0013349 -2.5061 -0.0013352 533.2728229156176 47.796 0.3491 44.927 44.776 45.125 -2.869 14 9 2 0 0 0 0.6817 1 9029 9029 13.042 1.4022 1 625660 43644 2370 28996 29016 43016 43016 0.0005996457523451681 SSVLELLI 8 Unmodified _SSVLELLI_ 0 0 0 REV__STKLD1|p.P629L|1|0.26|ENSG00000198870|chr9:133405264-133405264|C/T|missense_variant REV__STKLD1|p.P629L|1|0.26|ENSG00000198870|chr9:133405264-133405264|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23095703125 2 437.268219 872.521884 NaN NaN NaN NaN NaN NaN NaN 14.608 1 13.493 12.993 13.993 -1.1142 0 0 0 0.21486 1 2200 2200 5.7604 0 1 + 43645 24745 28997 29017 43017 43017 0.08052437325773099 SSVLSLSFAQL 11 Unmodified _SSVLSLSFAQL_ 0 0 0 REV__nc|ENSG00000112053|Q96RN1-4|SLC26A8 REV__nc|ENSG00000112053|Q96RN1-4|SLC26A8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3204345703125 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 55.665 1 52.781 52.281 53.281 -2.8837 0 0 0 0.23018 1 10656 10656 8.1555 0.8663 1 + 43646 24000 28998 29018 43018 43018 0.05410263957674033 SSVPTPLPIQL 11 Unmodified _SSVPTPLPIQL_ 0 0 0 KIF19|p.P729L|1|0.34|ENSG00000196169|chr17:74353267-74353267|C/T|missense_variant KIF19|p.P729L|1|0.34|ENSG00000196169|chr17:74353267-74353267|C/T|missense_variant KIF19|p.P729L|1|0.34|ENSG00000196169|chr17:74353267-74353267|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3367919921875 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 59.835 1 56.521 56.021 57.021 -3.3139 0 0 0 0.23324 1 11134 11134 5.7319 0.43497 1 43647 11998 28999 29019 43019 43019 0.09047140854386271 SSVSCSGFSSV 11 Unmodified _SSVSCSGFSSV_ 0 0 0 ENST00000585809.5_2_19:994339-994534:+|nuORF ENST00000585809.5_2_19:994339-994534:+|nuORF ENST00000585809.5_2_19:994339-994534:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6904296875 2 523.726589 1045.43863 NaN NaN NaN NaN NaN NaN NaN 75.924 1 72.509 72.009 73.009 -3.4151 0 0 0 0.18831 1 14812 14812 21.537 5.3879 1 43648 11537 29000 29020 43020 43020 -0.08227667184405618 SSVTPVSRRY 10 Unmodified _SSVTPVSRRY_ 0 0 0 REV__ENST00000528074.1_1_11:17098819-17099188:-|nuORF REV__ENST00000528074.1_1_11:17098819-17099188:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3136596679688 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 65.066 1 61.608 61.108 62.108 -3.4581 0 0 0 0.22588 1 12170 12170 10.074 2.7847 1 + 43649 22720 29001 29021 43021 43021 0.04019031249231375 SSVTPVSRRY 10 Unmodified _SSVTPVSRRY_ 0 0 0 REV__ENST00000528074.1_1_11:17098819-17099188:-|nuORF REV__ENST00000528074.1_1_11:17098819-17099188:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3123168945312 2 576.312012 1150.60947 0.15276 8.804E-05 -0.11517 -6.6376E-05 0.037591 2.1664E-05 576.3119482266259 60.076 0.35342 56.853 56.709 57.063 -3.2237 14 9 2 0 0 0 0.71097 1 11226 11226 10.074 0 1 1000000 + 43650 22720 29001 29021 43022 43022 0.04019031249231375 SSVVTAVKFTI 11 Unmodified _SSVVTAVKFTI_ 0 0 0 nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1 nc|ENSG00000111530|Q86VP6-2|CAND1 nc|ENSG00000111530|Q86VP6-2|CAND1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3110961914062 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 62.64 1 59.224 58.724 59.724 -3.4158 0 0 0 0.22943 1 11695 11695 8.7454 0.58988 1 43651 2625 29002 29022 43023 43023 0.09047140854386271 SSVWGHTV 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SSVWGHTV_ 1 0 0 REV__ENST00000517833.1_1_8:144063596-144063734:-|nuORF REV__ENST00000517833.1_1_8:144063596-144063734:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2407531738281 2 457.721967 913.429381 0.26568 0.00012161 0.28653 0.00013115 0.55222 0.00025276 457.7219793661411 21.803 0.34284 21.803 21.602 21.945 0 25 9 3 0 0 0 0.25036 1 3657 3657 40.449 6.3461 1 3896200 + 43652 22602 29003 29023 43024 43024 -0.030796476877753776 SSVWGHTV 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SSVWGHTV_ 1 0 0 REV__ENST00000517833.1_1_8:144063596-144063734:-|nuORF REV__ENST00000517833.1_1_8:144063596-144063734:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 457.721967 913.429381 0.69526 0.00031824 -0.47733 -0.00021848 0.21793 9.9753E-05 457.72171361155773 23.335 0.39792 21.781 21.578 21.976 -1.5532 0.015739 -0.0005856 NaN 40.449 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3774900 + 43653 22602 29003 29023 -0.030796476877753776 SSWKFFQLRER 11 Unmodified _SSWKFFQLRER_ 0 0 0 REV__nc|ENSG00000136381|P48200-2|IREB2 REV__nc|ENSG00000136381|P48200-2|IREB2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3907470703125 2 742.393867 1482.77318 NaN NaN NaN NaN NaN NaN NaN 56.143 1 52.954 52.454 53.454 -3.1895 0 0 0 0.23698 1 10397 10397 2.7352 0.23671 1 + 43654 16327 29004 29024 43025 43025 0.051106290201232696 SSWLWASSY 9 Unmodified _SSWLWASSY_ 0 0 0 PTCH1|p.N97Tfs*20|1|0.17|ENSG00000185920|chr9:95506511-95506511|T/-|frameshift_variant PTCH1|p.N97Tfs*20|1|0.17|ENSG00000185920|chr9:95506511-95506511|T/-|frameshift_variant PTCH1|p.N97Tfs*20|1|0.17|ENSG00000185920|chr9:95506511-95506511|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7839965820312 2 543.748182 1085.48181 0.065039 3.5365E-05 0.25478 0.00013854 0.31982 0.0001739 543.7481725753496 52.19 0.98345 49.102 48.67 49.654 -3.0876 60 27 3 0 0 0 0.72864 1 9696 9696 16.942 8.1969 1 9151600 43655 12843 29005 29025 43026 43026 -0.057511093448283646 SSWPVPSR 8 Unmodified _SSWPVPSR_ 0 0 0 REV__ENST00000484061.5_1_2:47238570-47256396:+|nuORF REV__ENST00000484061.5_1_2:47238570-47256396:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2386779785156 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 62.858 1 59.601 59.101 60.101 -3.2567 0 0 0 0.21486 1 11788 11788 9.3474 0 1 + 43656 21701 29006 29026 43027 43027 0.0003634506618936939 SSWSAGENDSY 11 Unmodified _SSWSAGENDSY_ 0 0 0 CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR;HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant CON__Q86YZ3 CON__Q86YZ3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2791748046875 2 601.733457 1201.45236 1.0362 0.00062351 -0.96189 -0.0005788 0.074293 4.4705E-05 601.7328590473974 18.914 0.51384 17.604 17.42 17.934 -1.3109 39 14 4 0 0 0 0.22021 1 3094 3094 63.961 5.2817 1 8319400 + 43657 703 29007 29027 43028 43028 -0.14030718151616384 SSWSAGENDSY 11 Unmodified _SSWSAGENDSY_ 0 0 0 CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR;HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant CON__Q86YZ3 CON__Q86YZ3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2791748046875 2 601.733457 1201.45236 -0.00081575 -4.9087E-07 0.21461 0.00012914 0.21379 0.00012864 601.7335704227422 18.832 0.49623 17.507 17.331 17.827 -1.3251 36 13 4 0 0 0 0.35468 1 2832 2832 55.503 5.5697 1 5368500 + 43658 703 29007 29027 43029 43029 -0.14030718151616384 SSWSIYYY 8 Unmodified _SSWSIYYY_ 0 0 0 ENST00000287859.10_2_1:186352263-186355193:+|nuORF ENST00000287859.10_2_1:186352263-186355193:+|nuORF ENST00000287859.10_2_1:186352263-186355193:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0731201171875 3 356.827281 1067.46001 -0.20027 -7.1462E-05 2.873 0.0010252 2.6727 0.0009537 357.1618810062589 26.683 0.68503 26.683 26.359 27.044 0 54 19 4 0 0 0 1.0243 1 4692 4692 7.2892 6.0959 1 4604000 43659 8464 29008 29028 43030 43030 -0.07101914093368578 SSWSNCYDY 9 Unmodified _SSWSNCYDY_ 0 0 0 REV__nc|ENSG00000240053|Q8NDX9-2|LY6G5B REV__nc|ENSG00000240053|Q8NDX9-2|LY6G5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.220703125 3 375.471168 1123.39167 -0.13393 -5.0287E-05 0.25537 9.5883E-05 0.12144 4.5596E-05 375.8054160123675 30.574 0.20612 30.574 30.519 30.725 0 6 5 2 0 0 0 0.87918 1 5500 5500 2.7352 0.82882 1 482330 + 43660 19778 29009 29029 43031 43031 -0.16508526735537998 SSWSNCYDY 9 Unmodified _SSWSNCYDY_ 0 0 0 REV__nc|ENSG00000240053|Q8NDX9-2|LY6G5B REV__nc|ENSG00000240053|Q8NDX9-2|LY6G5B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.471168 1123.39167 0.25142 9.4401E-05 -1.8148 -0.0006814 -1.5634 -0.000587 375.80511602903715 32.727 0.20346 30.58 30.452 30.655 -2.1468 0.0031015 -0.0020016 NaN 2.7352 11 5 3 NaN NaN NaN NaN 0 NaN NaN 0 313820 + 43661 19778 29009 29029 -0.16508526735537998 SSYDQFNSF 9 Unmodified _SSYDQFNSF_ 0 0 0 tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1 tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1 tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7767944335938 2 547.724904 1093.43525 0.31871 0.00017457 0.23335 0.00012781 0.55206 0.00030238 547.7250964645431 75.667 0.76561 72.033 71.643 72.409 -3.6337 43 21 3 0 0 0 0.16619 1 14409 14409 41.84 11.203 1 4113900 43662 26327 29010 29030 43032 43032 -0.10772593966771637 SSYHGNHCSW 10 Unmodified _SSYHGNHCSW_ 0 0 0 REV__ENSG00000231396|ENST00000417945|USP17L10 REV__ENSG00000231396|ENST00000417945|USP17L10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.26513671875 2 589.227622 1176.44069 0.32877 0.00019372 -0.12434 -7.3265E-05 0.20443 0.00012045 589.2275312827933 121.91 0.89786 117.38 117 117.9 -4.5305 60 24 3 0 0 0 0.6817 1 23476 23476 13.042 2.2185 1 7875600 + 43663 19746 29011 29031 43033 43033 -0.14047193655937917 SSYRLPNHI 9 Unmodified _SSYRLPNHI_ 0 0 0 REV__ENSG00000176895|ENST00000641490|OR51A7 REV__ENSG00000176895|ENST00000641490|OR51A7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7944946289062 2 543.788173 1085.56179 NaN NaN NaN NaN NaN NaN NaN 53.267 1 50.172 49.672 50.672 -3.0954 0 0 0 0.23508 1 9843 9843 12.532 0 1 + 43664 18524 29012 29032 43034 43034 0.02243377049035189 SSYRSHDHY 9 Unmodified _SSYRSHDHY_ 0 0 0 ENSG00000148840|ENST00000278070|PPRC1 ENSG00000148840|ENST00000278070|PPRC1 ENSG00000148840|ENST00000278070|PPRC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3218383789062 2 576.246869 1150.47918 NaN NaN NaN NaN NaN NaN NaN 64.251 1 60.994 60.494 61.494 -3.2567 0 0 0 0.23508 1 12062 12062 7.9102 1.187 1 43665 4763 29013 29033 43035 43035 -0.09003564749764337 STAAKIMGV 9 Unmodified _STAAKIMGV_ 0 0 0 nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF nc|ENSG00000105618|Q8WWY3-2|PRPF31 nc|ENSG00000105618|Q8WWY3-2|PRPF31 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 439.2073974609375 2 439.244221 876.473888 -0.2604 -0.00011438 0.22029 9.676E-05 -0.04011 -1.7618E-05 439.24428507991234 71.37 0.56375 68.121 67.85 68.414 -3.2492 25 15 2 0 0 0 0.51337 1 13870 13870 19.626 19.374 1 2515700 43666 12272 29014 29034 43036 43036 0.030710401340684257 STAAKIMGV 9 Unmodified _STAAKIMGV_ 0 0 0 nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF nc|ENSG00000105618|Q8WWY3-2|PRPF31 nc|ENSG00000105618|Q8WWY3-2|PRPF31 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 439.244221 876.473888 -0.15821 -6.9493E-05 0.11896 5.2253E-05 -0.039249 -1.724E-05 439.244228824021 68.42 0.64393 68.42 68.144 68.788 0 0.23471 0.00010941 NaN 10.899 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1525400 43667 12272 29014 29034 0.030710401340684257 STAAKIMGV 9 Unmodified _STAAKIMGV_ 0 0 0 nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF nc|ENSG00000105618|Q8WWY3-2|PRPF31 nc|ENSG00000105618|Q8WWY3-2|PRPF31 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 439.244221 876.473888 0.27278 0.00011982 -0.25127 -0.00011037 0.02151 9.4482E-06 439.2440434897417 71.753 0.59995 68.125 67.737 68.337 -3.6275 -0.060545 -0.00021583 NaN 10.899 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1746600 43668 12272 29014 29034 0.030710401340684257 STAAKIMGV 9 Unmodified _STAAKIMGV_ 0 0 0 nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF nc|ENSG00000105618|Q8WWY3-2|PRPF31 nc|ENSG00000105618|Q8WWY3-2|PRPF31 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 439.244221 876.473888 0.19822 8.7067E-05 -0.21176 -9.3014E-05 -0.013541 -5.9477E-06 439.2440335859944 71.615 0.49481 68.076 67.869 68.364 -3.5385 -0.10927 -0.00018112 NaN 10.899 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1635900 43669 12272 29014 29034 0.030710401340684257 STAEEHVLA 9 Unmodified _STAEEHVLA_ 0 0 0 ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9;BRD9|p.T291M|1|0.35|ENSG00000028310|chr5:884032-884032|G/A|missense_variant;ENST00000490814.6_1_5:883556-888427:-|nuORF;ENST00000466684.5_1_5:879980-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-4|BRD9;ENST00000495794.5_1_5:883971-889814:-|nuORF ENSG00000028310|ENST00000467963|BRD9 ENSG00000028310|ENST00000467963|BRD9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73736572265625 2 478.737814 955.461075 -0.040002 -1.9151E-05 0.24185 0.00011578 0.20185 9.6632E-05 478.73785610711644 30.427 0.42554 30.427 30.235 30.66 0 20 11 2 0 0 0 0.46541 2 5451 5443;5451 21.747 4.8044 1 1380200 43670 1149 29015 29035 43037;43038 43038 -0.018436997244634767 STAEEHVLA 9 Unmodified _STAEEHVLA_ 0 0 0 ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9;BRD9|p.T291M|1|0.35|ENSG00000028310|chr5:884032-884032|G/A|missense_variant;ENST00000490814.6_1_5:883556-888427:-|nuORF;ENST00000466684.5_1_5:879980-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-4|BRD9;ENST00000495794.5_1_5:883971-889814:-|nuORF ENSG00000028310|ENST00000467963|BRD9 ENSG00000028310|ENST00000467963|BRD9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7377624511719 2 478.737814 955.461075 0.26109 0.000125 -0.44413 -0.00021262 -0.18303 -8.7625E-05 478.737750013159 32.249 0.38449 30.223 30.042 30.427 -2.0264 17 10 2 0 0 0 0.54354 1 5619 5619 16.942 3.4344 1 1343400 43671 1149 29015 29035 43039 43039 -0.018436997244634767 STAEEHVLA 9 Unmodified _STAEEHVLA_ 0 0 0 ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9;BRD9|p.T291M|1|0.35|ENSG00000028310|chr5:884032-884032|G/A|missense_variant;ENST00000490814.6_1_5:883556-888427:-|nuORF;ENST00000466684.5_1_5:879980-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-4|BRD9;ENST00000495794.5_1_5:883971-889814:-|nuORF ENSG00000028310|ENST00000467963|BRD9 ENSG00000028310|ENST00000467963|BRD9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72918701171875 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 32.498 1 30.35 29.85 30.85 -2.1483 0 0 0 0.20628 1 5632 5632 21.747 8.2388 1 43672 1149 29015 29035 43040 43040 -0.018436997244634767 STAEREGYM 9 Unmodified _STAEREGYM_ 0 0 0 REV__ENSG00000087074|ENST00000200453|PPP1R15A REV__ENSG00000087074|ENST00000200453|PPP1R15A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2617797851562 2 522.226756 1042.43896 0.23357 0.00012198 -0.79479 -0.00041506 -0.56121 -0.00029308 522.2262582046595 23.917 0.4082 23.917 23.758 24.167 0 17 11 2 0 0 0 0.73268 1 4097 4097 18.146 5.1039 1 1729600 + 43673 14491 29016 29036 43041 43041 -0.08056247464537591 STAEREGYM 9 Unmodified _STAEREGYM_ 0 0 0 REV__ENSG00000087074|ENST00000200453|PPP1R15A REV__ENSG00000087074|ENST00000200453|PPP1R15A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2610473632812 2 522.226756 1042.43896 -0.048965 -2.5571E-05 -0.36118 -0.00018862 -0.41014 -0.00021419 522.226574259199 25.592 0.41827 23.739 23.465 23.883 -1.8534 26 11 3 0 0 0 0.62921 1 4199 4199 24.021 5.8742 1 1854200 + 43674 14491 29016 29036 43042 43042 -0.08056247464537591 STAFPYLY 8 Unmodified _STAFPYLY_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A nc|ENSG00000155975|Q8NEZ2-2|VPS37A nc|ENSG00000155975|Q8NEZ2-2|VPS37A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2456970214844 2 481.236919 960.459284 NaN NaN NaN NaN NaN NaN NaN 25.87 1 25.87 25.37 26.37 0 0 0 0 0.22625 1 4509 4509 3.5871 0 1 43675 5073 29017 29037 43043 43043 -0.02252708742435061 STAFPYLY 8 Unmodified _STAFPYLY_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A nc|ENSG00000155975|Q8NEZ2-2|VPS37A nc|ENSG00000155975|Q8NEZ2-2|VPS37A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23712158203125 2 481.236919 960.459284 NaN NaN NaN NaN NaN NaN NaN 27.603 1 25.848 25.348 26.348 -1.7552 0 0 0 0.22676 1 4625 4625 3.5871 0 1 43676 5073 29017 29037 43044 43044 -0.02252708742435061 STAIEPVTIR 10 Unmodified _STAIEPVTIR_ 0 0 0 REV__ENST00000426186.1_3_2:87121966-87144635:+|nuORF REV__ENST00000426186.1_3_2:87121966-87144635:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7949829101562 2 543.811313 1085.60807 0.16144 8.7791E-05 0.35672 0.00019399 0.51816 0.00028178 543.8113503408806 62.683 0.44779 59.268 58.985 59.433 -3.4158 22 12 3 0 0 0 0.71097 1 11663 11663 10.074 2.465 1 1207200 + 43677 21563 29018 29038 43045 43045 0.06869397160471635 STAILCPSGA 10 Unmodified _STAILCPSGA_ 0 0 0 ENST00000525340.5_1_11:62340999-62341314:-|nuORF ENST00000525340.5_1_11:62340999-62341314:-|nuORF ENST00000525340.5_1_11:62340999-62341314:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2294616699219 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 30.08 1 28.006 27.506 28.506 -2.0743 0 0 0 0.22544 1 5136 5136 19.257 2.3147 1 43678 10894 29019 29039 43046 43046 -0.014418541082136471 STAKHLLLY 9 Unmodified _STAKHLLLY_ 0 0 0 ENSG00000103356|ENST00000449606|EARS2;nc|ENSG00000103356|Q5JPH6-2|EARS2;ENST00000564987.1_1_16:23541198-23555881:-|nuORF ENSG00000103356|ENST00000449606|EARS2 ENSG00000103356|ENST00000449606|EARS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6826171875 2 523.305667 1044.59678 -0.023541 -1.2319E-05 -1.5345 -0.00080301 -1.558 -0.00081533 524.3075347326832 83.417 0.24246 79.718 79.587 79.829 -3.6985 8 6 3 0 0 0 0.47592 1 15918 15918 12.241 11.614 1 1030800 43679 2185 29020 29040 43047 43047 0.07626619857023798 STAQESCPP 9 Unmodified _STAQESCPP_ 0 0 0 nc|ENSG00000157617|Q9Y426-2|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2;ENSG00000157617|ENST00000380486|C2CD2 nc|ENSG00000157617|Q9Y426-2|C2CD2 nc|ENSG00000157617|Q9Y426-2|C2CD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2372741699219 2 460.194925 918.375297 NaN NaN NaN NaN NaN NaN NaN 34.735 1 32.458 31.958 32.958 -2.2766 0 0 0 0.23508 1 6094 6094 8.5933 0 1 43680 5132 29021 29041 43048 43048 -0.08715607901638123 STAQVVLVY 9 Unmodified _STAQVVLVY_ 0 0 0 REV__CELSR1|p.R1068W|1|0.31|ENSG00000075275|chr22:46533969-46533969|G/A|missense_variant REV__CELSR1|p.R1068W|1|0.31|ENSG00000075275|chr22:46533969-46533969|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27587890625 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 49.004 1 45.997 45.497 46.497 -3.0068 0 0 0 0.23508 1 8979 8979 8.5933 0 1 + 43681 13363 29022 29042 43049 43049 0.04846938211710494 STASIVPSAS 10 Unmodified _STASIVPSAS_ 0 0 0 REV__DACH2|p.I497Kfs*24|1|0.17|ENSG00000126733|chrX:86813216-86813217|-/AG|frameshift_variant REV__DACH2|p.I497Kfs*24|1|0.17|ENSG00000126733|chrX:86813216-86813217|-/AG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23974609375 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 22.311 1 20.837 20.337 21.337 -1.4742 0 0 0 0.22588 1 3807 3807 8.7454 0.83525 1 + 43682 13636 29023 29043 43050 43050 0.0033318441828669165 STCHGKQL 8 Unmodified _STCHGKQL_ 0 0 0 REV__ENST00000261461.6_2_1:212530325-212530547:+|nuORF REV__ENST00000261461.6_2_1:212530325-212530547:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2174987792969 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 133.92 1 129.11 128.61 129.61 -4.8175 0 0 0 0.21486 1 25780 25780 5.7604 0 1 + 43683 20180 29024 29044 43051 43051 -0.023875877025943737 STDDHGITSY 10 Unmodified _STDDHGITSY_ 0 0 0 ENST00000485551.5_1_1:35906621-35936502:-|nuORF;KIAA0319L|p.W910Gfs*10|1|0.3|ENSG00000142687|chr1:35442957-35442957|A/-|frameshift_variant;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L ENST00000485551.5_1_1:35906621-35936502:-|nuORF ENST00000485551.5_1_1:35906621-35936502:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7742919921875 2 548.233093 1094.45163 0.0038755 2.1247E-06 0.45817 0.00025119 0.46205 0.00025331 548.2333652413929 41.564 0.30694 38.93 38.71 39.017 -2.6348 15 8 2 0 0 0 0.41575 1 7747 7747 29.082 0 1 983860 43684 4439 29025 29045 43052 43052 -0.0918151280066013 STDGHRYLF 9 Unmodified _STDGHRYLF_ 0 0 0 PREX2|p.S565Rfs*10|1|0.31|ENSG00000046889|chr8:68080486-68080486|T/-|frameshift_variant;PREX2|p.S552Kfs*6|1|0.33|ENSG00000046889|chr8:68080448-68080449|-/A|frameshift_variant;ENST00000517617.1_1_8:68864752-69023167:+|nuORF;nc|ENSG00000046889|Q70Z35-3|PREX2;ENST00000529398.5_1_8:68864629-69017594:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2;ENSG00000046889|ENST00000288368|PREX2 PREX2|p.S565Rfs*10|1|0.31|ENSG00000046889|chr8:68080486-68080486|T/-|frameshift_variant PREX2|p.S565Rfs*10|1|0.31|ENSG00000046889|chr8:68080486-68080486|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7718505859375 2 548.26453 1094.51451 -0.011812 -6.4763E-06 0.33718 0.00018487 0.32537 0.00017839 548.7663959499622 79.362 0.66908 75.686 75.408 76.077 -3.676 44 18 3 0 0 0 0.8319 1 15086 15086 12.532 0 1 3985000 43685 12827 29026 29046 43053 43053 -0.028969022219598628 STDGKHWWEY 10 Unmodified _STDGKHWWEY_ 0 0 0 ENSG00000129315|ENST00000261900|CCNT1;nc|ENSG00000082258|O60583-2|CCNT2;ENSG00000082258|ENST00000264157|CCNT2 ENSG00000129315|ENST00000261900|CCNT1 ENSG00000129315|ENST00000261900|CCNT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156982421875 3 436.859643 1307.5571 0.17701 7.7328E-05 -0.28319 -0.00012372 -0.10618 -4.6388E-05 436.8594779874099 103.73 0.86883 99.383 98.929 99.798 -4.346 64 24 3 0 0 0 0.40561 1 19849 19849 30.431 20.667 1 7827600 43686 3561 29027 29047 43054 43054 -0.08437551884389904 STDGKHWWEY 10 Unmodified _STDGKHWWEY_ 0 0 0 ENSG00000129315|ENST00000261900|CCNT1;nc|ENSG00000082258|O60583-2|CCNT2;ENSG00000082258|ENST00000264157|CCNT2 ENSG00000129315|ENST00000261900|CCNT1 ENSG00000129315|ENST00000261900|CCNT1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 436.859643 1307.5571 0.39111 0.00017086 -0.6122 -0.00026745 -0.22109 -9.6585E-05 436.8593146661729 99.254 0.93639 99.254 98.789 99.725 0 -0.056759 -0.00019882 NaN 30.431 60 26 3 NaN NaN NaN NaN 0 NaN NaN 0 6591900 43687 3561 29027 29047 -0.08437551884389904 STDGKHWWEY 10 Unmodified _STDGKHWWEY_ 0 0 0 ENSG00000129315|ENST00000261900|CCNT1;nc|ENSG00000082258|O60583-2|CCNT2;ENSG00000082258|ENST00000264157|CCNT2 ENSG00000129315|ENST00000261900|CCNT1 ENSG00000129315|ENST00000261900|CCNT1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 436.859643 1307.5571 0.43794 0.00019132 -0.47544 -0.0002077 -0.037507 -1.6385E-05 436.8593765661556 103.33 0.88542 99.294 98.864 99.75 -4.0395 -0.016145 -1.9589E-05 NaN 30.431 74 24 4 NaN NaN NaN NaN 0 NaN NaN 0 9051600 43688 3561 29027 29047 -0.08437551884389904 STDGYLPLI 9 Unmodified _STDGYLPLI_ 0 0 0 REV__ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant REV__ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2641296386719 2 489.760758 977.506963 -0.027329 -1.3385E-05 0.77266 0.00037842 0.74534 0.00036504 489.76080246851734 62.363 0.69323 59.123 58.69 59.383 -3.2395 40 19 3 0 0 0 0.46598 1 11622 11622 0.029283 0 1 1994200 + 43689 13108 29028 29048 43055 43055 0.017309454577798533 STDHIIRVY 9 Unmodified _STDHIIRVY_ 0 0 0 PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant;ENSG00000146247|ENST00000275034|PHIP;PHIP|p.G351Wfs*16|1|0.05|ENSG00000146247|chr6:79017527-79017528|-/A|frameshift_variant;PHIP|p.F350Lfs*32|1|0.15|ENSG00000146247|chr6:79017528-79017528|A/-|frameshift_variant PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 369.2018737792969 3 368.532979 1102.57711 -0.34964 -0.00012885 0.41851 0.00015424 0.068868 2.538E-05 368.53298636217545 69.202 0.62998 65.812 65.491 66.121 -3.3903 40 17 3 0 0 0 0.069179 1 13090 13090 51.415 31.789 1 3924900 43690 4647 29029 29049 43056 43056 0.02992243846256315 STDHIIRVY 9 Unmodified _STDHIIRVY_ 0 0 0 PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant;ENSG00000146247|ENST00000275034|PHIP;PHIP|p.G351Wfs*16|1|0.05|ENSG00000146247|chr6:79017527-79017528|-/A|frameshift_variant;PHIP|p.F350Lfs*32|1|0.15|ENSG00000146247|chr6:79017528-79017528|A/-|frameshift_variant PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 368.532979 1102.57711 -0.52325 -0.00019284 0.48259 0.00017785 -0.04066 -1.4984E-05 368.53310936435804 65.882 0.58456 65.882 65.552 66.136 0 0.050508 0.00039983 NaN 51.415 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5099800 43691 4647 29029 29049 0.02992243846256315 STDHIIRVY 9 Unmodified _STDHIIRVY_ 0 0 0 PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant;ENSG00000146247|ENST00000275034|PHIP;PHIP|p.G351Wfs*16|1|0.05|ENSG00000146247|chr6:79017527-79017528|-/A|frameshift_variant;PHIP|p.F350Lfs*32|1|0.15|ENSG00000146247|chr6:79017528-79017528|A/-|frameshift_variant PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 368.532979 1102.57711 -0.31942 -0.00011772 0.11136 4.1041E-05 -0.20806 -7.6676E-05 368.532984104533 69.005 0.59869 65.826 65.447 66.046 -3.1796 -0.0058646 -1.0605E-05 NaN 51.415 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 4625900 43692 4647 29029 29049 0.02992243846256315 STDHIIRVY 9 Unmodified _STDHIIRVY_ 0 0 0 PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant;ENSG00000146247|ENST00000275034|PHIP;PHIP|p.G351Wfs*16|1|0.05|ENSG00000146247|chr6:79017527-79017528|-/A|frameshift_variant;PHIP|p.F350Lfs*32|1|0.15|ENSG00000146247|chr6:79017528-79017528|A/-|frameshift_variant PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 368.532979 1102.57711 0.36043 0.00013283 -0.34258 -0.00012625 0.017851 6.5788E-06 368.5327594533057 69.343 0.6489 65.806 65.433 66.082 -3.5362 -0.025088 -0.00051248 NaN 51.415 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3444500 43693 4647 29029 29049 0.02992243846256315 STDHVIRMY 9 Unmodified _STDHVIRMY_ 0 0 0 BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant;BRWD1|p.A1391Rfs*13|1|0.54|ENSG00000185658|chr21:39210022-39210022|T/-|frameshift_variant;BRWD1|p.M1415Nfs*7|1|0.21|ENSG00000185658|chr21:39206228-39206229|-/T|frameshift_variant;BRWD1|p.R1901Kfs*6|1|0.34|ENSG00000185658|chr21:39197367-39197368|-/T|frameshift_variant;nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;BRWD1|p.D556Vfs*9|1|0.08|ENSG00000185658|chr21:39264678-39264679|-/TCCA|frameshift_variant BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.22064208984375 3 374.518453 1120.53353 -0.40886 -0.00015312 0.10389 3.891E-05 -0.30496 -0.00011421 374.5184884725522 57.52 0.65704 57.52 57.237 57.894 0 44 18 3 0 0 0 0.63326 1 11031 11031 10.8 5.0161 1 5960800 43694 338 29030 29050 43057 43057 -0.021916889225394698 STDHVIRMY 9 Unmodified _STDHVIRMY_ 0 0 0 BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant;BRWD1|p.A1391Rfs*13|1|0.54|ENSG00000185658|chr21:39210022-39210022|T/-|frameshift_variant;BRWD1|p.M1415Nfs*7|1|0.21|ENSG00000185658|chr21:39206228-39206229|-/T|frameshift_variant;BRWD1|p.R1901Kfs*6|1|0.34|ENSG00000185658|chr21:39197367-39197368|-/T|frameshift_variant;nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;BRWD1|p.D556Vfs*9|1|0.08|ENSG00000185658|chr21:39264678-39264679|-/TCCA|frameshift_variant BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21429443359375 3 374.518453 1120.53353 -0.52416 -0.00019631 0.24622 9.2213E-05 -0.27795 -0.0001041 374.51851418189267 60.659 0.56308 57.436 57.171 57.734 -3.2237 44 15 4 0 0 0 0.41266 1 11353 11353 24.991 8.8419 1 6441400 43695 338 29030 29050 43058 43058 -0.021916889225394698 STDHVIRMY 9 Unmodified _STDHVIRMY_ 0 0 0 BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant;BRWD1|p.A1391Rfs*13|1|0.54|ENSG00000185658|chr21:39210022-39210022|T/-|frameshift_variant;BRWD1|p.M1415Nfs*7|1|0.21|ENSG00000185658|chr21:39206228-39206229|-/T|frameshift_variant;BRWD1|p.R1901Kfs*6|1|0.34|ENSG00000185658|chr21:39197367-39197368|-/T|frameshift_variant;nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;BRWD1|p.D556Vfs*9|1|0.08|ENSG00000185658|chr21:39264678-39264679|-/TCCA|frameshift_variant BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.518453 1120.53353 -0.2381 -8.9174E-05 -0.20245 -7.5821E-05 -0.44055 -0.00016499 374.5183917712971 60.527 0.65382 57.594 57.238 57.891 -2.9333 0.084358 -0.00011352 NaN 24.991 55 18 4 NaN NaN NaN NaN 0 NaN NaN 0 6648500 43696 338 29030 29050 -0.021916889225394698 STDHVIRMY 9 Unmodified _STDHVIRMY_ 0 0 0 BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant;BRWD1|p.A1391Rfs*13|1|0.54|ENSG00000185658|chr21:39210022-39210022|T/-|frameshift_variant;BRWD1|p.M1415Nfs*7|1|0.21|ENSG00000185658|chr21:39206228-39206229|-/T|frameshift_variant;BRWD1|p.R1901Kfs*6|1|0.34|ENSG00000185658|chr21:39197367-39197368|-/T|frameshift_variant;nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;BRWD1|p.D556Vfs*9|1|0.08|ENSG00000185658|chr21:39264678-39264679|-/TCCA|frameshift_variant BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 374.518453 1120.53353 0.093921 3.5175E-05 -0.50983 -0.00019094 -0.41591 -0.00015576 374.51828648448634 60.857 0.66159 57.488 57.065 57.727 -3.3694 -0.021446 -0.00045887 NaN 24.991 47 18 3 NaN NaN NaN NaN 0 NaN NaN 0 5748600 43697 338 29030 29050 -0.021916889225394698 STDILTHDIRE 11 Unmodified _STDILTHDIRE_ 0 0 0 UNC13C|p.F542Sfs*65|1|0.06|ENSG00000137766|chr15:54014523-54014523|T/-|frameshift_variant;UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant;UNC13C|p.W1592Gfs*7|1|0.85|ENSG00000137766|chr15:54393104-54393104|T/-|frameshift_variant;UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant;UNC13C|p.P2056Qfs*10|1|0.33|ENSG00000137766|chr15:54622384-54622384|C/-|frameshift_variant;ENSG00000137766|ENST00000260323|UNC13C UNC13C|p.F542Sfs*65|1|0.06|ENSG00000137766|chr15:54014523-54014523|T/-|frameshift_variant UNC13C|p.F542Sfs*65|1|0.06|ENSG00000137766|chr15:54014523-54014523|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 433.888671875 3 433.889491 1298.64664 0.25978 0.00011272 -3.6309 -0.0015754 -3.3711 -0.0014627 434.22180837929534 87.041 0.10233 83.09 83.03 83.133 -3.9503 4 2 2 0 0 0 0.79196 1 16564 16564 4.7159 0.30977 1 682190 43698 4106 29031 29051 43059 43059 0.009266580043458816 STDISSLY 8 Unmodified _STDISSLY_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 885.4209594726562 1 885.420004 884.412728 0.27904 0.00024707 0.43177 0.0003823 0.71081 0.00062937 885.4202779824251 94.585 0.55492 94.585 94.312 94.867 0 21 15 2 0 0 0 0.05639 6 18532 18469;18488;18529;18532;18576;18577 86.121 7.4677 1 2402400 43699 3180 29032 29052 43060;43061;43062;43063;43064;43065 43063 -0.034101933643796656 STDISSLY 8 Unmodified _STDISSLY_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 885.4203491210938 1 885.420004 884.412728 0.29864 0.00026442 0.20082 0.00017781 0.49946 0.00044223 885.4201368856754 98.8 0.55424 94.667 94.37 94.925 -4.1326 25 15 2 0 0 0 0.036929 4 19392 19343;19388;19392;19439 93.883 0 1 2715100 43700 3180 29032 29052 43066;43067;43068;43069 43068 -0.034101933643796656 STDISSLY 8 Unmodified _STDISSLY_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 885.4193115234375 1 885.420004 884.412728 0.45285 0.00040097 0.023672 2.096E-05 0.47653 0.00042193 885.4199325260038 99.066 0.41753 94.796 94.511 94.929 -4.2692 19 11 2 0 0 0 0.039878 3 18905 18902;18905;18949 101.72 7.8386 1 1975700 43701 3180 29032 29052 43070;43071;43072 43071 -0.034101933643796656 STDISSLY 8 Unmodified _STDISSLY_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 885.4203491210938 1 885.420004 884.412728 0.29334 0.00025972 0.11254 9.9646E-05 0.40588 0.00035937 885.4199529838095 98.655 0.67467 94.699 94.396 95.071 -3.9564 31 19 2 0 0 0 0.036592 4 18942 18939;18942;18986;18989 98.807 12.686 1 2489800 43702 3180 29032 29052 43073;43074;43075;43076 43074 -0.034101933643796656 STDKQMGY 8 Unmodified _STDKQMGY_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2454833984375 2 465.205292 928.396032 0.1254 5.8337E-05 -0.86273 -0.00040135 -0.73733 -0.00034301 465.2049993055901 21.585 1.1344 21.585 21.298 22.432 0 87 32 5 0 0 0 5.4895E-05 1 3611 3611 96.111 54.016 1 83332000 43703 1667 29033 29053 43077 43077 -0.07103017521967558 STDKQMGY 8 Unmodified _STDKQMGY_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23736572265625 2 465.205292 928.396032 -0.12374 -5.7563E-05 -0.24324 -0.00011316 -0.36698 -0.00017072 465.2052055996752 22.909 1.0822 21.455 21.19 22.272 -1.4535 63 30 4 0 0 0 0.16168 1 3636 3636 85.642 49.597 1 21342000 43704 1667 29033 29053 43078 43078 -0.07103017521967558 STDKQMGY 8 Unmodified _STDKQMGY_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2373046875 2 465.205292 928.396032 -0.4616 -0.00021474 0.23076 0.00010735 -0.23085 -0.00010739 465.2053838223602 23.153 0.64523 21.364 21.091 21.736 -1.7886 47 18 4 0 0 0 0.0034293 1 3687 3687 118.89 64.121 1 8806400 43705 1667 29033 29053 43079 43079 -0.07103017521967558 STDKQMGY 8 Unmodified _STDKQMGY_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 465.205292 928.396032 0.6794 0.00031606 -1.4822 -0.00068953 -0.8028 -0.00037347 465.20475779658324 23.041 0.98457 21.488 21.132 22.117 -1.5532 0.014545 -0.00085592 NaN 114.65 77 27 5 NaN NaN NaN NaN 0 NaN NaN 0 108110000 43706 1667 29033 29053 -0.07103017521967558 STDLEFDRVV 10 Unmodified _STDLEFDRVV_ 0 0 0 ENSG00000215203|ENST00000399770|GRXCR1 ENSG00000215203|ENST00000399770|GRXCR1 ENSG00000215203|ENST00000399770|GRXCR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2654418945312 2 590.79586 1179.57717 0.40023 0.00023645 -0.062862 -3.7139E-05 0.33736 0.00019931 590.7955675434523 78.439 0.52804 74.673 74.423 74.951 -3.7664 27 14 3 0 0 0 0.82238 1 14853 14853 22.736 0 1 2419300 43707 7741 29034 29054 43080 43080 -0.005438009444560521 STDLEFDRVV 10 Unmodified _STDLEFDRVV_ 0 0 0 ENSG00000215203|ENST00000399770|GRXCR1 ENSG00000215203|ENST00000399770|GRXCR1 ENSG00000215203|ENST00000399770|GRXCR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2693481445312 2 590.79586 1179.57717 0.026637 1.5737E-05 -0.24862 -0.00014688 -0.22198 -0.00013115 590.7955800558209 78.246 0.60212 74.587 74.302 74.904 -3.6588 29 16 3 0 0 0 0.80147 1 14938 14938 26.268 0 1 1818900 43708 7741 29034 29054 43081 43081 -0.005438009444560521 STDLLRQFN 9 Unmodified _STDLLRQFN_ 0 0 0 REV__ENSG00000163344|ENST00000368467|PMVK REV__ENSG00000163344|ENST00000368467|PMVK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7864990234375 2 547.285463 1092.55637 0.10831 5.9277E-05 -0.89273 -0.00048858 -0.78442 -0.0004293 547.2848098579692 59.294 0.64128 55.981 55.671 56.312 -3.3139 34 17 3 0 0 0 0.44262 1 11046 11046 23.148 1.4018 1 1787500 + 43709 17560 29035 29055 43082 43082 0.01379653466574382 STDLLRQFN 9 Unmodified _STDLLRQFN_ 0 0 0 REV__ENSG00000163344|ENST00000368467|PMVK REV__ENSG00000163344|ENST00000368467|PMVK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7861938476562 2 547.285463 1092.55637 0.19445 0.00010642 -0.68635 -0.00037563 -0.49189 -0.00026921 547.2850144617096 59.357 0.5178 56.134 55.843 56.361 -3.2237 28 14 2 0 0 0 0.46541 1 11098 11098 21.747 5.5975 1 2372700 + 43710 17560 29035 29055 43083 43083 0.01379653466574382 STDLLYPGQT 10 Unmodified _STDLLYPGQT_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16;REV__MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant REV__ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7717895507812 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 78.854 1 75.344 74.844 75.844 -3.5102 0 0 0 0.17567 1 15397 15397 32.786 0 1 + 43711 18720;23888 29036 29056 43084 43084 -0.01386874864465426 STDLVSLIMS 10 Unmodified _STDLVSLIMS_ 0 0 0 REV__ENSG00000251322|ENST00000262795|SHANK3 REV__ENSG00000251322|ENST00000262795|SHANK3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.279296875 2 533.278457 1064.54236 NaN NaN NaN NaN NaN NaN NaN 76.371 1 72.738 72.238 73.238 -3.6337 0 0 0 2.8426 1 14540 14540 0.69767 0.6338 1 + 43712 19830 29037 29057 43085 43085 0.012672399232769749 STDMLTVEKA 10 Unmodified _STDMLTVEKA_ 0 0 0 REV__nc|ENSG00000146904|P21709-3|EPHA1 REV__nc|ENSG00000146904|P21709-3|EPHA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7714233398438 2 547.773539 1093.53253 0.47638 0.00026095 4.429 0.0024261 4.9054 0.002687 547.775220209795 75.108 0.69482 75.108 74.851 75.546 0 28 19 2 0 0 0 0.4942 1 14652 14652 24.991 4.5373 1 2565200 + 43713 16909 29038 29058 43086 43086 -0.01049948082118135 STDMMAWE 8 Unmodified _STDMMAWE_ 0 0 0 REV__nc|ENSG00000214534|A8MWA4|ZNF705EP REV__nc|ENSG00000214534|A8MWA4|ZNF705EP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 486.24322509765625 2 485.685878 969.357204 -0.053063 -2.5772E-05 -0.77797 -0.00037785 -0.83104 -0.00040362 485.6854474834242 41.85 0.97011 39.215 38.847 39.817 -2.6348 48 27 2 0 0 0 0.87562 1 7937 7937 0.063987 0.063987 1 1560900 + 43714 19289 29039 29059 43087 43087 -0.1287006614799111 STDMMAWE 8 Unmodified _STDMMAWE_ 0 0 0 REV__nc|ENSG00000214534|A8MWA4|ZNF705EP REV__nc|ENSG00000214534|A8MWA4|ZNF705EP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 485.685878 969.357204 0.061609 2.9923E-05 -0.61874 -0.00030051 -0.55713 -0.00027059 485.6855356640812 42.244 1.3027 39.593 38.755 40.058 -2.651 0.29059 -5.0933E-05 NaN 0.063987 50 36 2 NaN NaN NaN NaN 0 NaN NaN 0 2435400 + 43715 19289 29039 29059 -0.1287006614799111 STDMMAWE 8 Unmodified _STDMMAWE_ 0 0 0 REV__nc|ENSG00000214534|A8MWA4|ZNF705EP REV__nc|ENSG00000214534|A8MWA4|ZNF705EP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 485.685878 969.357204 -0.17294 -8.3996E-05 -0.18677 -9.0712E-05 -0.35971 -0.00017471 485.68567974698607 41.706 0.97921 39.1 38.737 39.716 -2.606 -0.20299 0.00036867 NaN 0.063987 32 27 2 NaN NaN NaN NaN 0 NaN NaN 0 780280 + 43716 19289 29039 29059 -0.1287006614799111 STDNSDNC 8 Unmodified _STDNSDNC_ 0 0 0 KIAA1614|p.N687Mfs*3|1|0.24|ENSG00000135835|chr1:180935966-180935966|A/-|frameshift_variant;ENSG00000135835|ENST00000367588|KIAA1614;KIAA1614|p.L612M|1|0.39|ENSG00000135835|chr1:180935743-180935743|C/A|missense_variant;nc|ENSG00000135835|Q5VZ46-2|KIAA1614 KIAA1614|p.N687Mfs*3|1|0.24|ENSG00000135835|chr1:180935966-180935966|A/-|frameshift_variant KIAA1614|p.N687Mfs*3|1|0.24|ENSG00000135835|chr1:180935966-180935966|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 428.1425476074219 2 428.142889 854.271225 NaN NaN NaN NaN NaN NaN NaN 4.1444 1 3.5182 3.0182 4.0182 -0.62626 0 0 0 0.21486 1 28 28 0 0 1 43717 3957 29040 29060 43088 43088 -0.16173934729158645 STDPREALQY 10 Unmodified _STDPREALQY_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93;NUP93|p.F699Lfs*19|1|0.34|ENSG00000102900|chr16:56839025-56839025|T/-|frameshift_variant nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.253173828125 2 590.28566 1178.55677 0.13212 7.7991E-05 0.10969 6.4746E-05 0.24181 0.00014274 590.2857444092564 70.12 1.4135 70.12 69.455 70.868 0 147 39 5 0 0 0 0.22509 1 13456 13456 42.312 30.072 1 173790000 43718 2151 29041 29061 43089 43089 -0.025369716042405344 STDPREALQY 10 Unmodified _STDPREALQY_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93;NUP93|p.F699Lfs*19|1|0.34|ENSG00000102900|chr16:56839025-56839025|T/-|frameshift_variant nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2586059570312 2 590.28566 1178.55677 0.3695 0.00021811 -0.13969 -8.2455E-05 0.22981 0.00013565 590.2856341605846 73.705 1.5097 70.341 69.582 71.092 -3.3643 160 42 6 0 0 0 0.018324 3 14284 14234;14284;14483 93.166 49.308 1 242230000 43719 2151 29041 29061 43090;43091;43092 43091 -0.025369716042405344 STDPREALQY 10 Unmodified _STDPREALQY_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93;NUP93|p.F699Lfs*19|1|0.34|ENSG00000102900|chr16:56839025-56839025|T/-|frameshift_variant nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2491455078125 2 590.28566 1178.55677 0.6144 0.00036267 -0.37456 -0.0002211 0.23984 0.00014157 590.2854712774399 74.042 2.0487 70.366 69.542 71.591 -3.6764 177 58 5 0 0 0 0.01714 2 13919 13919;14205 96.936 53.163 1 208770000 43720 2151 29041 29061 43093;43094 43093 -0.025369716042405344 STDPREALQY 10 Unmodified _STDPREALQY_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93;NUP93|p.F699Lfs*19|1|0.34|ENSG00000102900|chr16:56839025-56839025|T/-|frameshift_variant nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2708740234375 2 590.28566 1178.55677 0.38455 0.00022699 -0.02766 -1.6327E-05 0.35689 0.00021067 590.2856956163664 73.974 1.9518 70.38 69.555 71.507 -3.594 173 55 5 0 0 0 0.4144 1 14190 14190 29.841 11.694 1 247950000 43721 2151 29041 29061 43095 43095 -0.025369716042405344 STDPSVLGKY 10 Unmodified _STDPSVLGKY_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2849731445312 2 533.774396 1065.53424 0.047123 2.5153E-05 -0.15253 -8.1416E-05 -0.10541 -5.6263E-05 533.7746048718175 72.072 1.1164 72.072 71.633 72.749 0 146 31 6 0 0 0 9.9541E-28 1 13947 13947 197.81 125.88 1 1112100000 43722 2782 29042 29062 43096 43096 0.004094289981594557 STDPSVLGKY 10 Unmodified _STDPSVLGKY_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2833251953125 2 533.774396 1065.53424 0.034056 1.8178E-05 -0.029855 -1.5936E-05 0.0042015 2.2426E-06 533.7748932667134 75.481 1.6721 72.066 71.647 73.319 -3.4151 201 47 6 0 0 0 3.9493999999999996E-38 1 14676 14676 184.36 112.43 1 1630299999.9999998 43723 2782 29042 29062 43097 43097 0.004094289981594557 STDPSVLGKY 10 Unmodified _STDPSVLGKY_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2865600585938 2 533.774396 1065.53424 0.46036 0.00024573 -0.46117 -0.00024616 -0.00080538 -4.2989E-07 533.7746390741102 75.847 1.4781 72.125 71.688 73.166 -3.7227 200 42 6 0 0 0 2.4343E-49 1 14369 14369 218.2 152.96 1 1096300000 43724 2782 29042 29062 43098 43098 0.004094289981594557 STDPSVLGKY 10 Unmodified _STDPSVLGKY_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2852172851562 2 533.774396 1065.53424 0.28191 0.00015047 -0.30363 -0.00016207 -0.021726 -1.1597E-05 533.7747735457406 75.821 1.462 72.188 71.679 73.141 -3.6337 190 41 6 0 0 0 1.1894E-37 1 14460 14460 203.64 138.4 1 1378500000 43725 2782 29042 29062 43099 43099 0.004094289981594557 STDPYRTIL 9 Unmodified _STDPYRTIL_ 0 0 0 REV__ENST00000562158.1_1_3:108895753-108896005:-|nuORF REV__ENST00000562158.1_1_3:108895753-108896005:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2833251953125 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 75.234 1 71.87 71.37 72.37 -3.3643 0 0 0 0.22251 1 14676 14676 16.942 1.0951 1 + 43726 23063 29043 29063 43100 43100 0.020531352350417365 STDRQVTI 8 Unmodified _STDRQVTI_ 0 0 0 ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2 ENST00000547048.5_1_12:53862529-53873223:+|nuORF ENST00000547048.5_1_12:53862529-53873223:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2460632324219 2 460.245806 918.47706 0.28136 0.00012949 -0.069617 -3.2041E-05 0.21174 9.7452E-05 460.2456666405888 36.88 0.38373 36.88 36.743 37.126 0 14 10 2 0 0 0 0.39104 1 6806 6806 32.786 3.7041 1 972820 43727 7328 29044 29064 43101 43101 0.014560065124328503 STDRQVTI 8 Unmodified _STDRQVTI_ 0 0 0 ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2 ENST00000547048.5_1_12:53862529-53873223:+|nuORF ENST00000547048.5_1_12:53862529-53873223:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2458190917969 2 460.245806 918.47706 -0.37917 -0.00017451 0.44557 0.00020507 0.066405 3.0563E-05 460.2459557018889 39.225 0.36027 36.676 36.501 36.861 -2.5491 15 9 2 0 0 0 0.17924 1 7293 7293 47.749 3.8904 1 888570 43728 7328 29044 29064 43102 43102 0.014560065124328503 STDRQVTI 8 Unmodified _STDRQVTI_ 0 0 0 ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2 ENST00000547048.5_1_12:53862529-53873223:+|nuORF ENST00000547048.5_1_12:53862529-53873223:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24578857421875 2 460.245806 918.47706 -0.016339 -7.5198E-06 0.15048 6.9256E-05 0.13414 6.1736E-05 460.24588007797564 39.13 0.34187 36.688 36.479 36.821 -2.4419 14 9 2 0 0 0 0.13517 1 6974 6974 56.177 12.319 1 958120 43729 7328 29044 29064 43103 43103 0.014560065124328503 STDSAHESFT 10 Unmodified _STDSAHESFT_ 0 0 0 ENSG00000116544|ENST00000373347|DLGAP3 ENSG00000116544|ENST00000373347|DLGAP3 ENSG00000116544|ENST00000373347|DLGAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2705078125 2 541.225268 1080.43598 0.29166 0.00015785 1.2471 0.00067498 1.5388 0.00083283 541.2257640901988 113.41 0.97533 113.41 112.97 113.94 0 75 27 4 0 0 0 0.32088 1 22324 22324 36.127 0 1 14369000 43730 2932 29045 29065 43104 43104 -0.1010179931768107 STDSAHESFT 10 Unmodified _STDSAHESFT_ 0 0 0 ENSG00000116544|ENST00000373347|DLGAP3 ENSG00000116544|ENST00000373347|DLGAP3 ENSG00000116544|ENST00000373347|DLGAP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26025390625 2 541.225268 1080.43598 0.44463 0.00024065 0.83171 0.00045014 1.2763 0.00069079 541.2256590224587 118.29 1.1864 113.79 113.28 114.47 -4.502 88 33 4 0 0 0 0.41575 1 23354 23354 36.127 36.127 1 18207000 43731 2932 29045 29065 43105 43105 -0.1010179931768107 STDSAHESFT 10 Unmodified _STDSAHESFT_ 0 0 0 ENSG00000116544|ENST00000373347|DLGAP3 ENSG00000116544|ENST00000373347|DLGAP3 ENSG00000116544|ENST00000373347|DLGAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2794189453125 2 541.225268 1080.43598 0.51715 0.0002799 0.92008 0.00049797 1.4372 0.00077787 541.2256406084152 118.1 1.3115 113.69 113.07 114.38 -4.4088 98 36 4 0 0 0 0.32088 1 22706 22706 36.127 0 1 17693000 43732 2932 29045 29065 43106 43106 -0.1010179931768107 STDSGWPWES 10 Unmodified _STDSGWPWES_ 0 0 0 REV__ENST00000344318.3_1_22:30144457-30162862:-|nuORF REV__ENST00000344318.3_1_22:30144457-30162862:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3372802734375 2 576.235635 1150.45672 0.17996 0.0001037 -0.54451 -0.00031377 -0.36455 -0.00021007 576.2357015877436 56.646 0.45706 53.456 53.302 53.759 -3.1895 28 12 3 0 0 0 0.67319 1 10477 10477 13.906 0.86358 1 3627800 + 43733 20741 29046 29066 43107 43107 -0.11249208938033917 STDSGWPWES 10 Unmodified _STDSGWPWES_ 0 0 0 REV__ENST00000344318.3_1_22:30144457-30162862:-|nuORF REV__ENST00000344318.3_1_22:30144457-30162862:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3139038085938 2 576.235635 1150.45672 0.17996 0.0001037 -0.54451 -0.00031377 -0.36455 -0.00021007 576.2357015877436 56.646 0.45706 53.456 53.302 53.759 -3.1895 28 12 3 0 0 0 0.79872 1 10507 10507 25.399 0 1 3627800 + 43734 20741 29046 29066 43108 43108 -0.11249208938033917 STDSGWPWES 10 Unmodified _STDSGWPWES_ 0 0 0 REV__ENST00000344318.3_1_22:30144457-30162862:-|nuORF REV__ENST00000344318.3_1_22:30144457-30162862:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3324584960938 2 576.235635 1150.45672 0.037499 2.1609E-05 -1.0551 -0.00060797 -1.0176 -0.00058636 576.2350931996252 56.65 0.63396 53.474 53.224 53.858 -3.1761 31 17 3 0 0 0 0.48196 3 10521 10521;10522;10568 13.906 0.86358 1 2653300 + 43735 20741 29046 29066 43109;43110;43111 43109 -0.11249208938033917 STDSGWPWES 10 Unmodified _STDSGWPWES_ 0 0 0 REV__ENST00000344318.3_1_22:30144457-30162862:-|nuORF REV__ENST00000344318.3_1_22:30144457-30162862:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3324584960938 2 576.235635 1150.45672 0.037499 2.1609E-05 -1.0551 -0.00060797 -1.0176 -0.00058636 576.2350931996252 56.65 0.63396 53.474 53.224 53.858 -3.1761 31 17 3 0 0 0 0.84281 1 10522 10522 13.906 0 1 2653300 + 43736 20741 29046 29066 43112 43112 -0.11249208938033917 STDSHMDEDG 10 Unmodified _STDSHMDEDG_ 0 0 0 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7721557617188 2 547.190568 1092.36658 0.13564 7.4219E-05 -3.2343 -0.0017698 -3.0986 -0.0016955 547.6901623205274 59.038 0.21429 56.127 55.964 56.179 -2.9105 7 5 2 0 0 0 1.1181 1 11351 11351 0.69767 0 1 557120 43737 4883 29047 29067 43113 43113 -0.17590626328774306 STDSSYQMY 9 Unmodified _STDSSYQMY_ 0 0 0 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2849731445312 2 541.210772 1080.40699 0.0056811 3.0747E-06 0.24546 0.00013285 0.25114 0.00013592 541.2109758444797 59.059 0.9955 59.059 58.617 59.612 0 75 27 4 0 0 0 0.28156 1 11337 11337 48.346 8.3885 1 8378500 43738 6047 29048 29068 43114 43114 -0.12999659938327568 STDSSYQMY 9 Unmodified _STDSSYQMY_ 0 0 0 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26171875 2 541.210772 1080.40699 0.27761 0.00015025 -0.39188 -0.00021209 -0.11427 -6.1844E-05 541.2106182808064 62.421 1.1783 59.46 59.009 60.188 -2.9614 96 33 4 0 0 0 0.00071729 1 12032 12032 120.45 80.493 1 18114000 43739 6047 29048 29068 43115 43115 -0.12999659938327568 STDSSYQMY 9 Unmodified _STDSSYQMY_ 0 0 0 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2599487304688 2 541.210772 1080.40699 0.21142 0.00011442 -0.081618 -4.4172E-05 0.1298 7.0248E-05 541.2107810462771 62.762 1.2065 59.346 58.838 60.045 -3.4158 96 33 5 0 0 0 0.00071729 1 11736 11736 120.45 74.429 1 12591000 43740 6047 29048 29068 43116 43116 -0.12999659938327568 STDSSYQMY 9 Unmodified _STDSSYQMY_ 0 0 0 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2847290039062 2 541.210772 1080.40699 0.31089 0.00016826 -0.24728 -0.00013383 0.06361 3.4426E-05 541.2107069029682 62.647 1.2461 59.407 58.86 60.106 -3.2395 98 35 4 0 0 0 0.017753 1 11749 11749 120.45 80.493 1 12384000 43741 6047 29048 29068 43117 43117 -0.12999659938327568 STDTDEESY 9 Unmodified _STDTDEESY_ 0 0 0 HIVEP2|p.S286Y|1|0.21|ENSG00000010818|chr6:142773882-142773882|G/T|missense_variant HIVEP2|p.S286Y|1|0.21|ENSG00000010818|chr6:142773882-142773882|G/T|missense_variant HIVEP2|p.S286Y|1|0.21|ENSG00000010818|chr6:142773882-142773882|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.691650390625 2 523.693466 1045.37238 0.21697 0.00011363 -2.1837 -0.0011436 -1.9667 -0.0010299 523.691861108312 24.109 0.40402 24.109 23.863 24.267 0 37 11 4 0 0 0 0.25702 2 4152 4110;4152 34.102 22.462 1 3801900 43742 11907 29049 29069 43118;43119 43119 -0.14849204545453176 STDTDEESY 9 Unmodified _STDTDEESY_ 0 0 0 HIVEP2|p.S286Y|1|0.21|ENSG00000010818|chr6:142773882-142773882|G/T|missense_variant HIVEP2|p.S286Y|1|0.21|ENSG00000010818|chr6:142773882-142773882|G/T|missense_variant HIVEP2|p.S286Y|1|0.21|ENSG00000010818|chr6:142773882-142773882|G/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.693466 1045.37238 -0.4302 -0.00022529 -2.6411 -0.0013831 -3.0713 -0.0016084 523.6916965260189 25.76 0.37929 24.125 23.995 24.374 -1.6347 0.0080115 -0.00025169 NaN 34.102 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 605120 43743 11907 29049 29069 -0.14849204545453176 STDTGEAVY 9 Unmodified _STDTGEAVY_ 0 0 0 MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant;MKS1|p.F377Lfs*53|1|0.3|ENSG00000011143|chr17:58208139-58208139|A/-|frameshift_variant;nc|ENSG00000011143|Q9NXB0-2|MKS1;ENSG00000011143|ENST00000393119|MKS1 MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 944.3806762695312 1 942.405083 941.397806 0.32414 0.00030547 -0.1141 -0.00010753 0.21003 0.00019793 942.4050027220113 38.287 1.1133 35.882 35.397 36.51 -2.4049 66 31 3 0 0 0 0.62314 1 6805 6805 16.942 7.5949 1 3784700 43744 1070 29050 29070 43120 43120 -0.0752368523237692 STDTLTKTK 9 Unmodified _STDTLTKTK_ 0 0 0 REV__ENSG00000159337|ENST00000290472|PLA2G4D REV__ENSG00000159337|ENST00000290472|PLA2G4D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 331.99420166015625 3 332.185356 993.53424 NaN NaN NaN NaN NaN NaN NaN 125.39 1 120.74 120.24 121.24 -4.6495 0 0 0 0.23508 1 24126 24126 2.4985 0 1 + 43745 17368 29051 29071 43121 43121 0.03721428998153442 STDTYFKNCT 10 Unmodified _STDTYFKNCT_ 0 0 0 nc|ENSG00000185518|Q7L1I2-2|SV2B;ENSG00000185518|ENST00000394232|SV2B;SV2B|p.G586Wfs*4|2|0.27|ENSG00000185518|chr15:91289561-91289562|-/T|frameshift_variant nc|ENSG00000185518|Q7L1I2-2|SV2B nc|ENSG00000185518|Q7L1I2-2|SV2B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2498779296875 2 590.252971 1178.49139 NaN NaN NaN NaN NaN NaN NaN 36.129 1 33.735 33.235 34.235 -2.3938 0 0 0 0.22535 1 6666 6666 20.454 1.1966 1 43746 6997 29052 29072 43122 43122 -0.0907170912159927 STDVAQPPL 9 Unmodified _STDVAQPPL_ 0 0 0 ZNF276|p.S312L|1|0.38|ENSG00000158805|chr16:89723638-89723638|C/T|missense_variant ZNF276|p.S312L|1|0.38|ENSG00000158805|chr16:89723638-89723638|C/T|missense_variant ZNF276|p.S312L|1|0.38|ENSG00000158805|chr16:89723638-89723638|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2454833984375 2 464.242732 926.470912 0.14457 6.7114E-05 -0.34172 -0.00015864 -0.19715 -9.1525E-05 464.2426775631921 21.687 1.6962 21.687 21.33 23.026 0 116 48 4 0 0 0 0.26282 1 3610 3610 0.40827 0 1 305380000 43747 26610 29053 29073 43123 43123 0.004734882809088958 STDWIPSPY 9 Unmodified _STDWIPSPY_ 0 0 0 REV__ENST00000548977.5_1_12:52448117-52448165:+|nuORF REV__ENST00000548977.5_1_12:52448117-52448165:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2802734375 2 533.248015 1064.48148 0.055227 2.945E-05 -0.058029 -3.0944E-05 -0.0028019 -1.4941E-06 533.2484874443625 76.819 2.8935 73.404 72.791 75.685 -3.4151 298 81 6 0 0 0 0.52414 1 14896 14896 18.135 4.6271 1 1319800000 + 43748 22914 29054 29074 43124 43124 -0.048185290646415524 STDYETHEF 9 Unmodified _STDYETHEF_ 0 0 0 nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB nc|ENSG00000163069|Q16585-2|SGCB nc|ENSG00000163069|Q16585-2|SGCB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.90667724609375 3 376.820854 1127.44073 -0.28288 -0.00010659 2.5068 0.00094462 2.2239 0.00083802 376.82337995706257 75.5 1.568 72.085 71.716 73.284 -3.4151 131 44 6 0 0 0 0.50726 1 14792 14792 2.6312 0.70373 1 6939700 43749 5396 29055 29075 43125 43125 -0.11788915174952308 STDYETHEF 9 Unmodified _STDYETHEF_ 0 0 0 nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB nc|ENSG00000163069|Q16585-2|SGCB nc|ENSG00000163069|Q16585-2|SGCB MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 376.820854 1127.44073 -0.22317 -8.4094E-05 2.501 0.00094244 2.2779 0.00085835 376.82340224590325 72.056 0.94138 72.056 71.707 72.648 0 -0.052873 0.00031269 NaN 2.6312 107 26 6 NaN NaN NaN NaN 0 NaN NaN 0 8290200 43750 5396 29055 29075 -0.11788915174952308 STDYETHEF 9 Unmodified _STDYETHEF_ 0 0 0 nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB nc|ENSG00000163069|Q16585-2|SGCB nc|ENSG00000163069|Q16585-2|SGCB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 376.820854 1127.44073 0.10968 4.1329E-05 1.7011 0.00064099 1.8107 0.00068232 376.82331264621035 75.909 0.92627 72.186 71.862 72.789 -3.7227 0.076987 -0.00059166 NaN 2.6312 109 26 6 NaN NaN NaN NaN 0 NaN NaN 0 6950400 43751 5396 29055 29075 -0.11788915174952308 STEAARRQ 8 Unmodified _STEAARRQ_ 0 0 0 REV__RC3H1|p.D854N|1|0.31|ENSG00000135870|chr1:173947546-173947546|C/T|missense_variant REV__RC3H1|p.D854N|1|0.31|ENSG00000135870|chr1:173947546-173947546|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2427062988281 2 459.741222 917.467892 0.60909 0.00028003 -0.018698 -8.5963E-06 0.5904 0.00027143 459.74122701871744 80.17 1.6476 80.17 79.828 81.475 0 63 46 2 0 0 0 0.71876 1 15619 15619 11.64 0 1 1957800 + 43752 16293 29056 29076 43126 43126 0.005856579467604206 STEALLQEA 9 Unmodified _STEALLQEA_ 0 0 0 nc|ENSG00000141644|Q9UIS9-7|MBD1;nc|ENSG00000141644|Q9UIS9-5|MBD1;nc|ENSG00000141644|Q9UIS9-10|MBD1;ENSG00000141644|ENST00000269468|MBD1;nc|ENSG00000141644|Q9UIS9-9|MBD1;nc|ENSG00000141644|Q9UIS9-12|MBD1 nc|ENSG00000141644|Q9UIS9-7|MBD1 nc|ENSG00000141644|Q9UIS9-7|MBD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2377624511719 2 481.245472 960.476391 0.10602 5.102E-05 -0.47546 -0.00022881 -0.36944 -0.00017779 481.24457546735755 61.033 0.38508 57.799 57.689 58.074 -3.2347 17 10 3 0 0 0 0.12935 1 11444 11444 1.6919 0.8167 1 668460 43753 4391 29057 29077 43127 43127 -0.005428329272717747 STEHKSRLLQY 11 Unmodified _STEHKSRLLQY_ 0 0 0 ENST00000409916.5_1_2:198380362-198400291:+|nuORF ENST00000409916.5_1_2:198380362-198400291:+|nuORF ENST00000409916.5_1_2:198380362-198400291:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 454.7526550292969 3 454.577247 1360.70991 NaN NaN NaN NaN NaN NaN NaN 116.29 1 111.8 111.3 112.3 -4.486 0 0 0 0.22632 1 22930 22930 0.03141 0 1 43754 9572 29058 29078 43128 43128 0.043986435122405965 STEHSIPTPP 10 Unmodified _STEHSIPTPP_ 0 0 0 KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant;nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319 KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2640991210938 2 533.264196 1064.51384 0.27549 0.00014691 -0.39859 -0.00021256 -0.1231 -6.5646E-05 533.264001601987 40.739 1.1674 40.739 40.173 41.34 0 79 32 4 0 0 0 0.12982 2 7589 7491;7589 52.268 8.8899 1 15087000 43755 4074 29059 29079 43129;43130 43130 -0.015837416616705013 STEHSIPTPP 10 Unmodified _STEHSIPTPP_ 0 0 0 KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant;nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319 KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2640991210938 2 533.264196 1064.51384 -0.0022705 -1.2108E-06 0.027735 1.479E-05 0.025465 1.358E-05 533.2641804702288 43.638 0.94849 40.87 40.433 41.381 -2.7683 71 26 3 0 0 0 0.096811 1 8158 8158 61.357 11.424 1 16928000 43756 4074 29059 29079 43131 43131 -0.015837416616705013 STEHSIPTPP 10 Unmodified _STEHSIPTPP_ 0 0 0 KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant;nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319 KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2643432617188 2 533.264196 1064.51384 0.33125 0.00017664 -0.26311 -0.0001403 0.068141 3.6337E-05 533.2640072268089 43.578 1.0702 40.812 40.392 41.462 -2.7661 72 29 3 0 0 0 0.12982 1 7903 7903 52.268 2.3353 1 18739000 43757 4074 29059 29079 43132 43132 -0.015837416616705013 STEHSIPTPP 10 Unmodified _STEHSIPTPP_ 0 0 0 KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant;nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319 KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26416015625 2 533.264196 1064.51384 0.0087992 4.6923E-06 0.077146 4.1139E-05 0.085946 4.5832E-05 533.2642090971848 43.561 0.97993 40.813 40.381 41.361 -2.7475 72 27 3 0 0 0 0.096811 2 7876 7833;7876 61.357 2.6787 1 13351000 43758 4074 29059 29079 43133;43134 43134 -0.015837416616705013 STEIPNDQLY 10 Unmodified _STEIPNDQLY_ 0 0 0 REV__nc|ENSG00000184347|O75094-3|SLIT3 REV__nc|ENSG00000184347|O75094-3|SLIT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2695922851562 2 590.280043 1178.54553 0.49078 0.0002897 -0.51451 -0.0003037 -0.023726 -1.4005E-05 590.2799097206871 58.035 0.67361 54.783 54.358 55.032 -3.2517 43 18 3 0 0 0 0.18186 1 10747 10747 45.7 11.298 1 3317900 + 43759 18892 29060 29080 43135 43135 -0.03659793698375324 STEIPNDQLY 10 Unmodified _STEIPNDQLY_ 0 0 0 REV__nc|ENSG00000184347|O75094-3|SLIT3 REV__nc|ENSG00000184347|O75094-3|SLIT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2606811523438 2 590.280043 1178.54553 0.49078 0.0002897 -0.51451 -0.0003037 -0.023726 -1.4005E-05 590.2799097206871 58.035 0.67361 54.783 54.358 55.032 -3.2517 43 18 3 0 0 0 0.23651 1 10802 10802 78.728 48.092 1 3317900 + 43760 18892 29060 29080 43136 43136 -0.03659793698375324 STEIPNDQLY 10 Unmodified _STEIPNDQLY_ 0 0 0 REV__nc|ENSG00000184347|O75094-3|SLIT3 REV__nc|ENSG00000184347|O75094-3|SLIT3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 590.280043 1178.54553 0.27482 0.00016222 -0.018816 -1.1107E-05 0.256 0.00015111 590.2800513447268 54.68 0.62703 54.68 54.354 54.981 0 -0.078098 0.00024289 NaN 78.728 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3022000 + 43761 18892 29060 29080 -0.03659793698375324 STEIPNDQLY 10 Unmodified _STEIPNDQLY_ 0 0 0 REV__nc|ENSG00000184347|O75094-3|SLIT3 REV__nc|ENSG00000184347|O75094-3|SLIT3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 590.280043 1178.54553 0.35588 0.00021007 -0.20387 -0.00012034 0.15201 8.9726E-05 590.2800432355682 57.65 0.5293 54.755 54.519 55.048 -2.8944 -0.0033785 2.4424E-05 NaN 78.728 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3299200 + 43762 18892 29060 29080 -0.03659793698375324 STEIPNDQLY 10 Unmodified _STEIPNDQLY_ 0 0 0 REV__nc|ENSG00000184347|O75094-3|SLIT3 REV__nc|ENSG00000184347|O75094-3|SLIT3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 590.280043 1178.54553 0.083412 4.9237E-05 -0.25695 -0.00015167 -0.17353 -0.00010243 590.2801958135835 58.021 0.6176 54.815 54.511 55.128 -3.2052 0.056914 -3.8237E-05 NaN 78.728 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3632500 + 43763 18892 29060 29080 -0.03659793698375324 STEIREVGPV 10 Unmodified _STEIREVGPV_ 0 0 0 EPHA3|p.N165S|1|0.81|ENSG00000044524|chr3:89210200-89210200|A/G|missense_variant EPHA3|p.N165S|1|0.81|ENSG00000044524|chr3:89210200-89210200|A/G|missense_variant EPHA3|p.N165S|1|0.81|ENSG00000044524|chr3:89210200-89210200|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7927856445312 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 42.88 1 40.229 39.729 40.729 -2.651 0 0 0 0.22544 1 7728 7728 19.257 0 1 43764 11774 29061 29081 43137 43137 0.032325202637593975 STEKEWTGK 9 Unmodified _STEKEWTGK_ 0 0 0 REV__ENST00000515834.1_1_5:180651698-180652007:+|nuORF REV__ENST00000515834.1_1_5:180651698-180652007:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2640991210938 2 533.264196 1064.51384 0.27549 0.00014691 -0.39859 -0.00021256 -0.1231 -6.5646E-05 533.264001601987 40.739 1.1674 40.739 40.173 41.34 0 79 32 4 0 0 0 0.11717 1 7637 7637 49.933 8.0934 1 15087000 + 43765 22595 29062 29082 43138 43138 -0.015837416616705013 STEKEWTGK 9 Unmodified _STEKEWTGK_ 0 0 0 REV__ENST00000515834.1_1_5:180651698-180652007:+|nuORF REV__ENST00000515834.1_1_5:180651698-180652007:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.26416015625 2 533.264196 1064.51384 -0.0022705 -1.2108E-06 0.027735 1.479E-05 0.025465 1.358E-05 533.2641804702288 43.638 0.94849 40.87 40.433 41.381 -2.7683 71 26 3 0 0 0 0.09143 1 8203 8203 58.679 8.7458 1 16928000 + 43766 22595 29062 29082 43139 43139 -0.015837416616705013 STEKEWTGK 9 Unmodified _STEKEWTGK_ 0 0 0 REV__ENST00000515834.1_1_5:180651698-180652007:+|nuORF REV__ENST00000515834.1_1_5:180651698-180652007:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2642211914062 2 533.264196 1064.51384 0.0087992 4.6923E-06 0.077146 4.1139E-05 0.085946 4.5832E-05 533.2642090971848 43.561 0.97993 40.813 40.381 41.361 -2.7475 72 27 3 0 0 0 0.11032 1 7922 7922 52.268 8.2865 1 13351000 + 43767 22595 29062 29082 43140 43140 -0.015837416616705013 STEKLVNK 8 Unmodified _STEKLVNK_ 0 0 0 REV__AKAP9|p.N2420S|1|0.25|ENSG00000127914|chr7:92079392-92079392|A/G|missense_variant REV__AKAP9|p.N2420S|1|0.25|ENSG00000127914|chr7:92079392-92079392|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2267761230469 2 459.766374 917.518196 0.21055 9.6803E-05 -0.12236 -5.6256E-05 0.088191 4.0547E-05 459.76626096806007 28.191 0.31365 26.436 26.283 26.597 -1.7552 11 8 2 0 0 0 0.93477 1 4774 4774 24.674 2.9272 1 478870 + 43768 13001 29063 29083 43141 43141 0.05613767551892579 STELDDITVT 10 Unmodified _STELDDITVT_ 0 0 0 ENSG00000174417|ENST00000518632|TRHR ENSG00000174417|ENST00000518632|TRHR ENSG00000174417|ENST00000518632|TRHR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7689819335938 2 547.266601 1092.51865 0.17134 9.3767E-05 1.295 0.00070873 1.4664 0.00080249 547.2672517050387 46.074 0.86757 43.234 42.825 43.693 -2.8409 47 24 2 0 0 0 0.29353 2 8744 8695;8744 37.974 5.6685 1 25558000 43769 6348 29064 29084 43142;43143 43143 -0.023909023095711746 STELDTQL 8 Unmodified _STELDTQL_ 0 0 0 REV__ENSG00000133454|ENST00000335473|MYO18B REV__ENSG00000133454|ENST00000335473|MYO18B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7520446777344 2 453.724372 905.434192 0.084431 3.8308E-05 0.14698 6.6688E-05 0.23141 0.000105 453.7243818542077 56.158 0.97811 56.158 55.836 56.814 0 71 27 4 0 0 0 0.077908 1 10741 10741 81.864 3.8797 1 7610100 + 43770 16167 29065 29085 43144 43144 -0.022308083356620045 STELKTNL 8 Unmodified _STELKTNL_ 0 0 0 REV__ENST00000537553.5_1_12:30904036-30906345:-|nuORF REV__ENST00000537553.5_1_12:30904036-30906345:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75201416015625 2 453.250557 904.486562 0.032182 1.4587E-05 -0.28754 -0.00013033 -0.25536 -0.00011574 453.25036723649913 59.012 0.63927 55.76 55.488 56.127 -3.2517 43 17 3 0 0 0 8448 1 11025 11025 4.2837 1.6406 1 3656500 + 43771 22826 29066 29086 43145 43145 0.030497747979552514 STENGNFLY 9 Unmodified _STENGNFLY_ 0 0 0 nc|ENSG00000289758|Q92902-3|HPS1;nc|ENSG00000289758|Q92902-2|HPS1;nc|ENSG00000289758|Q92902-4|HPS1;ENSG00000107521|ENST00000361490|HPS1;ENST00000474873.5_1_10:100195027-100205113:-|nuORF;ENST00000498219.5_1_10:100185741-100202985:-|nuORF;ENST00000467246.5_1_10:100191016-100205113:-|nuORF nc|ENSG00000289758|Q92902-3|HPS1 nc|ENSG00000289758|Q92902-3|HPS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27490234375 2 522.735271 1043.45599 0.10486 5.4813E-05 -0.020079 -1.0496E-05 0.084779 4.4317E-05 522.7351767126937 96.054 0.8293 96.054 95.661 96.491 0 50 23 3 0 0 0 0.32263 1 18792 18792 30.637 1.555 1 3898900 43772 2425 29067 29087 43146 43146 -0.06400003587077663 STEPAQKL 8 Unmodified _STEPAQKL_ 0 0 0 REV__ENST00000304834.11_1_17:73143658-73143733:-|nuORF REV__ENST00000304834.11_1_17:73143658-73143733:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23583984375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 99.106 1 99.106 98.606 99.606 0 0 0 0 0.21452 1 19434 19434 13.508 2.684 1 + 43773 20428 29068 29088 43147 43147 0.019015056264720442 STEPIGTIGS 10 Unmodified _STEPIGTIGS_ 0 0 0 REV__ENSG00000205592|ENST00000454784|MUC19 REV__ENSG00000205592|ENST00000454784|MUC19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2377624511719 2 481.245472 960.476391 0.10602 5.102E-05 -0.47546 -0.00022881 -0.36944 -0.00017779 481.24457546735755 61.033 0.38508 57.799 57.689 58.074 -3.2347 17 10 3 0 0 0 0.59928 1 11447 11447 19.257 1.122 1 668460 + 43774 19595 29069 29089 43148 43148 -0.00542832927260406 STEPSLKL 8 Unmodified _STEPSLKL_ 0 0 0 REV__ENSG00000184908|ENST00000375679|CLCNKB REV__ENSG00000184908|ENST00000375679|CLCNKB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23602294921875 2 437.74765 873.480748 -0.014696 -6.433E-06 0.033168 1.4519E-05 0.018473 8.0863E-06 437.74764661651875 56.529 0.38235 56.529 56.258 56.641 0 17 10 2 0 0 0 0.66066 1 10756 10756 21.747 0 1 830550 + 43775 18921 29070 29090 43149 43149 0.03894676286279264 STEQGFYS 8 Unmodified _STEQGFYS_ 0 0 0 ENST00000376227.3_1_X:49091999-49093594:+|nuORF ENST00000376227.3_1_X:49091999-49093594:+|nuORF ENST00000376227.3_1_X:49091999-49093594:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2311096191406 2 459.695615 917.376677 0.29669 0.00013639 1.3419 0.00061689 1.6386 0.00075328 459.6960230819162 26.066 0.68673 26.066 25.808 26.495 0 25 19 2 0 0 0 0.86208 1 4581 4581 0.25148 0 1 1202700 43776 9245 29071 29091 43150 43150 -0.08531650541226554 STEQLRTIIRY 11 Unmodified _STEQLRTIIRY_ 0 0 0 BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.I2261Yfs*13|1|0.3|ENSG00000115760|chr2:32476268-32476268|A/-|frameshift_variant;BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22869873046875 3 460.592898 1378.75686 -0.12732 -5.8643E-05 0.6514 0.00030003 0.52408 0.00024139 460.5930937662745 102.63 0.21452 98.444 98.377 98.591 -4.1861 6 5 2 0 0 0 0.96123 1 20169 20169 7.0341 2.9175 1 602140 43777 319 29072 29092 43151 43151 0.08263503063380995 STERETRQEY 10 Unmodified _STERETRQEY_ 0 0 0 ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 650.1611328125 2 649.802205 1297.58986 0.34639 0.00022509 -0.074006 -4.8089E-05 0.27239 0.000177 649.8024559584945 15.554 0.17425 14.338 14.238 14.412 -1.2159 6 4 2 0 0 0 0.83236 1 2397 2397 22.658 9.6156 1 474160 43778 1213 29073 29093 43152 43152 -0.04703389552196313 STERETRQEY 10 Unmodified _STERETRQEY_ 0 0 0 ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 649.802205 1297.58986 0.30012 0.00019502 0.017357 1.1279E-05 0.31748 0.0002063 649.8021168742355 14.617 0.17441 14.617 14.525 14.7 0 0.13919 4.7688E-05 NaN 22.658 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 645300 43779 1213 29073 29093 -0.04703389552196313 STERKLPE 8 Unmodified _STERKLPE_ 0 0 0 ENSG00000076706|ENST00000264036|MCAM;ENST00000528976.1_1_11:119180930-119182089:-|nuORF ENSG00000076706|ENST00000264036|MCAM ENSG00000076706|ENST00000264036|MCAM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7655944824219 2 480.261456 958.50836 0.13998 6.7228E-05 -0.024237 -1.164E-05 0.11575 5.5588E-05 480.2614212296994 61.289 0.938 58.05 57.581 58.519 -3.2395 76 26 4 0 0 0 0.68128 1 11439 11439 16.942 0 1 17779000 43780 1543 29074 29094 43153 43153 0.02744579546526893 STETINHVY 9 Unmodified _STETINHVY_ 0 0 0 REV__ENSG00000145087|ENST00000471454|STXBP5L REV__ENSG00000145087|ENST00000471454|STXBP5L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2843017578125 2 532.256371 1062.49819 0.67782 0.00036078 -0.77379 -0.00041186 -0.09597 -5.1081E-05 532.2559517380239 67.618 0.38699 64.122 63.924 64.311 -3.4965 19 10 3 0 0 0 0.54354 1 12680 12680 16.942 5.302 1 1327700 + 43781 16819 29075 29095 43154 43154 -0.030560281787074928 STETINHVY 9 Unmodified _STETINHVY_ 0 0 0 REV__ENSG00000145087|ENST00000471454|STXBP5L REV__ENSG00000145087|ENST00000471454|STXBP5L MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.256371 1062.49819 -0.2328 -0.00012391 -0.64995 -0.00034594 -0.88274 -0.00046985 532.2559707839283 64.166 0.34686 64.166 63.994 64.341 0 0.051531 -4.1771E-05 NaN 16.942 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1489300 + 43782 16819 29075 29095 -0.030560281787074928 STETINHVY 9 Unmodified _STETINHVY_ 0 0 0 REV__ENSG00000145087|ENST00000471454|STXBP5L REV__ENSG00000145087|ENST00000471454|STXBP5L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.256371 1062.49819 0.019951 1.0619E-05 -0.14243 -7.5808E-05 -0.12248 -6.5189E-05 532.2564086848207 67.224 0.45382 64.115 63.899 64.353 -3.1086 0.00042602 0.00049849 NaN 16.942 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1421200 + 43783 16819 29075 29095 -0.030560281787074928 STETINHVY 9 Unmodified _STETINHVY_ 0 0 0 REV__ENSG00000145087|ENST00000471454|STXBP5L REV__ENSG00000145087|ENST00000471454|STXBP5L MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.256371 1062.49819 0.67782 0.00036078 -0.77379 -0.00041186 -0.09597 -5.1081E-05 532.2559517380239 67.618 0.38699 64.122 63.924 64.311 -3.4965 0.0068536 -0.00017361 NaN 16.942 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1327700 + 43784 16819 29075 29095 -0.030560281787074928 STETINHVY 9 Unmodified _STETINHVY_ 0 0 0 REV__ENSG00000145087|ENST00000471454|STXBP5L REV__ENSG00000145087|ENST00000471454|STXBP5L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.256371 1062.49819 0.37339 0.00019874 -0.72517 -0.00038598 -0.35178 -0.00018724 532.2561695732364 67.383 0.37532 64.056 63.9 64.275 -3.3268 -0.058811 -0.00012185 NaN 16.942 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 814700 + 43785 16819 29075 29095 -0.030560281787074928 STETRGPAP 9 Unmodified _STETRGPAP_ 0 0 0 ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF ENST00000531526.5_1_11:45944386-45945084:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2303161621094 2 458.230156 914.445759 0.47873 0.00021937 -0.32433 -0.00014862 0.1544 7.0749E-05 458.22999017772673 29.743 0.49048 27.626 27.386 27.877 -2.1167 32 13 3 0 0 0 0.33512 1 5395 5395 0.40827 0 1 7166100 43786 10970 29076 29096 43155 43155 -0.0148856652166387 STEVILFTQG 10 Unmodified _STEVILFTQG_ 0 0 0 ENST00000482210.5_1_9:75538907-75567871:-|nuORF ENST00000482210.5_1_9:75538907-75567871:-|nuORF ENST00000482210.5_1_9:75538907-75567871:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7896118164062 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 45.768 1 42.927 42.427 43.427 -2.8409 0 0 0 0.22588 1 8627 8627 13.042 1.4022 1 43787 10390 29077 29097 43156 43156 0.022500020322468117 STEVMTPLLC 10 Unmodified _STEVMTPLLC_ 0 0 0 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7688598632812 2 547.267035 1092.51952 0.011935 6.5314E-06 0.58626 0.00032084 0.59819 0.00032737 547.2673030759396 46.1 0.93012 43.234 42.796 43.726 -2.8653 50 26 2 0 0 0 0.17721 1 8361 8361 46.021 6.0636 1 26864000 + 43788 15432 29078 29098 43157 43157 -0.023041024658596143 STEVMTPLLC 10 Unmodified _STEVMTPLLC_ 0 0 0 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7686767578125 2 547.267035 1092.51952 -0.024287 -1.3291E-05 0.63083 0.00034523 0.60654 0.00033194 547.2673313557348 46.125 1.0059 43.259 42.783 43.789 -2.8666 52 28 2 0 0 0 0.17721 2 8360 8360;8468 46.021 7.253 1 21031000 + 43789 15432 29078 29098 43158;43159 43158 -0.023041024658596143 STEVMTPLLC 10 Unmodified _STEVMTPLLC_ 0 0 0 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7933959960938 2 547.267035 1092.51952 -0.024287 -1.3291E-05 0.63083 0.00034523 0.60654 0.00033194 547.2673313557348 46.125 1.0059 43.259 42.783 43.789 -2.8666 52 28 2 0 0 0 0.66352 1 8456 8456 25.399 6.1423 1 21031000 + 43790 15432 29078 29098 43160 43160 -0.023041024658596143 STEVMTPLLC 10 Unmodified _STEVMTPLLC_ 0 0 0 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 547.267035 1092.51952 0.56964 0.00031175 -0.014731 -8.0619E-06 0.55491 0.00030368 547.2669792801496 43.05 0.93079 43.05 42.639 43.569 0 -0.14452 -0.00052452 NaN 46.021 52 26 2 NaN NaN NaN NaN 0 NaN NaN 0 30342000 + 43791 15432 29078 29098 -0.023041024658596143 STFADVAPDG 10 Unmodified _STFADVAPDG_ 0 0 0 REV__PRR23B|p.L57F|1|0.33|ENSG00000184814|chr3:139020493-139020493|G/A|missense_variant REV__PRR23B|p.L57F|1|0.33|ENSG00000184814|chr3:139020493-139020493|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2690124511719 2 490.221997 978.429441 NaN NaN NaN NaN NaN NaN NaN 57.46 1 54.208 53.708 54.708 -3.2517 0 0 0 0.22535 1 10669 10669 20.454 0 1 + 43792 24515 29079 29099 43161 43161 -0.06063692478426219 STFDHPELV 9 Unmodified _STFDHPELV_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.28125 2 522.753464 1043.49238 -0.059145 -3.0918E-05 0.13731 7.1782E-05 0.07817 4.0863E-05 522.7535122637255 94.372 0.65742 94.372 93.97 94.628 0 41 18 3 0 0 0 0.23744 1 18447 18447 52.268 29.12 1 5905300 43793 5705 29080 29100 43162 43162 -0.027631266904108998 STFDHPELV 9 Unmodified _STFDHPELV_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2632446289062 2 522.753464 1043.49238 -0.16878 -8.8231E-05 0.69249 0.000362 0.52371 0.00027377 522.7537013317356 98.515 0.73055 94.383 93.915 94.645 -4.1326 55 20 4 0 0 0 0.07121 1 19338 19338 78.149 55.001 1 7621300 43794 5705 29080 29100 43163 43163 -0.027631266904108998 STFDHPELV 9 Unmodified _STFDHPELV_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2807006835938 2 522.753464 1043.49238 -0.43603 -0.00022794 0.89102 0.00046578 0.45499 0.00023785 522.7538379632987 98.63 0.73382 94.361 93.987 94.721 -4.2692 56 20 4 0 0 0 0.11171 1 18893 18893 68.081 44.932 1 5940500 43795 5705 29080 29100 43164 43164 -0.027631266904108998 STFDHPELV 9 Unmodified _STFDHPELV_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2749633789062 2 522.753464 1043.49238 0.15435 8.0689E-05 0.1264 6.6075E-05 0.28075 0.00014676 522.7535020790821 98.311 0.80851 94.355 93.922 94.73 -3.9564 54 23 3 0 0 0 0.13686 1 18860 18860 61.357 38.209 1 5416200 43796 5705 29080 29100 43165 43165 -0.027631266904108998 STFDHPELVKL 11 Unmodified _STFDHPELVKL_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 430.2337646484375 3 429.231077 1284.6714 0.089141 3.8262E-05 -0.28778 -0.00012352 -0.19864 -8.5261E-05 429.2309276154936 121.7 1.0134 117.17 116.68 117.69 -4.5305 104 27 6 0 0 0 0.22786 1 23393 23393 24.884 24.773 1 79006000 43797 5705 29081 29101 43166 43166 0.04045337877687416 STFDHPELVKL 11 Unmodified _STFDHPELVKL_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 429.231077 1284.6714 0.11279 4.8411E-05 -0.21311 -9.1472E-05 -0.10032 -4.3061E-05 429.2309572658311 117.46 0.9868 117.46 117.05 118.04 0 0.24207 0.00024001 NaN 24.884 84 27 4 NaN NaN NaN NaN 0 NaN NaN 0 55906000 43798 5705 29081 29101 0.04045337877687416 STFDHPELVKL 11 Unmodified _STFDHPELVKL_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 429.231077 1284.6714 0.088602 3.8031E-05 -0.303 -0.00013006 -0.2144 -9.2026E-05 429.2309241423276 121.68 0.99802 117.13 116.67 117.67 -4.5476 -0.086754 0.00012426 NaN 24.884 105 27 5 NaN NaN NaN NaN 0 NaN NaN 0 94505000 43799 5705 29081 29101 0.04045337877687416 STFDHPELVKL 11 Unmodified _STFDHPELVKL_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 429.231077 1284.6714 0.52341 0.00022466 -0.64537 -0.00027701 -0.12196 -5.2349E-05 429.23078147014877 121.8 1.1204 117.11 116.6 117.72 -4.6873 -0.10569 -0.00031661 NaN 24.884 115 31 5 NaN NaN NaN NaN 0 NaN NaN 0 104770000 43800 5705 29081 29101 0.04045337877687416 STFDRRKR 8 Unmodified _STFDRRKR_ 0 0 0 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2762451171875 2 533.299239 1064.58392 NaN NaN NaN NaN NaN NaN NaN 75.106 1 71.741 71.241 72.241 -3.3643 0 0 0 0.21486 1 14654 14654 8.5933 0 1 + 43801 14084 29082 29102 43167 43167 0.05421601517468844 STFDRRKR 8 Unmodified _STFDRRKR_ 0 0 0 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27783203125 2 533.299239 1064.58392 NaN NaN NaN NaN NaN NaN NaN 31.209 1 29.061 28.561 29.561 -2.1483 0 0 0 0.21452 1 5369 5369 13.508 2.684 1 + 43802 14084 29082 29102 43168 43168 0.05421601517468844 STFHNQVFY 9 Unmodified _STFHNQVFY_ 0 0 0 REV__ENSG00000140740|ENST00000268379|UQCRC2 REV__ENSG00000140740|ENST00000268379|UQCRC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.22320556640625 3 381.513696 1141.51926 -0.27684 -0.00010562 1.1063 0.00042208 0.8295 0.00031647 381.5141041097104 44.166 0.45591 41.376 41.186 41.642 -2.79 18 12 2 0 0 0 0.5685 1 8312 8312 15.248 15.248 1 1235800 + 43803 16594 29083 29103 43169 43169 -0.045840180791856255 STFHNQVFY 9 Unmodified _STFHNQVFY_ 0 0 0 REV__ENSG00000140740|ENST00000268379|UQCRC2 REV__ENSG00000140740|ENST00000268379|UQCRC2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 381.513696 1141.51926 -0.27684 -0.00010562 1.1063 0.00042208 0.8295 0.00031647 381.5141041097104 44.166 0.45591 41.376 41.186 41.642 -2.79 0.014519 0.00036626 NaN 15.248 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1235800 + 43804 16594 29083 29103 -0.045840180791856255 STFHNQVFY 9 Unmodified _STFHNQVFY_ 0 0 0 REV__ENSG00000140740|ENST00000268379|UQCRC2 REV__ENSG00000140740|ENST00000268379|UQCRC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 381.513696 1141.51926 -0.039805 -1.5186E-05 0.50401 0.00019229 0.46421 0.0001771 381.51383997056007 44.113 0.59529 41.347 40.867 41.462 -2.7661 -0.014519 -0.00032313 NaN 15.248 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 713570 + 43805 16594 29083 29103 -0.045840180791856255 STFHQGSPQP 10 Unmodified _STFHQGSPQP_ 0 0 0 REV__MYO6|p.D540G|1|0.4|ENSG00000196586|chr6:75862668-75862668|A/G|missense_variant REV__MYO6|p.D540G|1|0.4|ENSG00000196586|chr6:75862668-75862668|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78076171875 2 543.254163 1084.49377 0.17255 9.374E-05 0.95559 0.00051913 1.1281 0.00061287 543.7559198341166 44.207 0.099972 41.417 41.359 41.459 -2.79 4 2 2 0 0 0 0.67319 1 8291 8291 13.906 3.8321 1 481830 + 43806 23904 29084 29104 43170 43170 -0.045094926016190584 STFMSRFY 8 Unmodified _STFMSRFY_ 0 0 0 REV__ENSG00000163376|ENST00000417314|KBTBD8 REV__ENSG00000163376|ENST00000417314|KBTBD8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 520.153564453125 2 519.739302 1037.46405 0.47065 0.00024461 2.1883 0.0011373 2.6589 0.001382 519.7408389801421 43.816 0.41709 43.816 43.64 44.057 0 24 11 3 0 0 0 1.0147 1 8189 8189 5.2307 0.90143 1 1028800 + 43807 17564 29085 29105 43171 43171 -0.05318147871321344 STFMSRFY 8 Unmodified _STFMSRFY_ 0 0 0 REV__ENSG00000163376|ENST00000417314|KBTBD8 REV__ENSG00000163376|ENST00000417314|KBTBD8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 519.739302 1037.46405 -0.25943 -0.00013484 3.8794 0.0020163 3.62 0.0018815 519.7409981977523 46.829 0.68605 43.988 43.593 44.279 -2.8409 0.015281 0.0010243 NaN 5.2307 32 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1665100 + 43808 17564 29085 29105 -0.05318147871321344 STFMSRFY 8 Unmodified _STFMSRFY_ 0 0 0 REV__ENSG00000163376|ENST00000417314|KBTBD8 REV__ENSG00000163376|ENST00000417314|KBTBD8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 519.739302 1037.46405 -0.060435 -3.1411E-05 2.358 0.0012256 2.2976 0.0011942 519.7408036138105 47.063 0.6248 44.113 43.67 44.295 -2.9499 0.14098 -0.00055716 NaN 5.2307 21 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1008900 + 43809 17564 29085 29105 -0.05318147871321344 STFRLCSEP 9 Unmodified _STFRLCSEP_ 0 0 0 REV__SLC22A6|p.F259Lfs*27|3|0.38|ENSG00000197901|chr11:62981862-62981862|A/-|frameshift_variant REV__SLC22A6|p.F259Lfs*27|3|0.38|ENSG00000197901|chr11:62981862-62981862|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2705688476562 2 520.247492 1038.48043 -0.26356 -0.00013712 0.12804 6.6614E-05 -0.13552 -7.0504E-05 520.2476345878875 85.236 1.0528 81.572 81.057 82.11 -3.6641 118 29 5 0 0 0 0.34411 1 16671 16671 29.082 5.9332 1 85507000 + 43810 19371 29086 29106 43172 43172 -0.037270667052325734 STFRLCSEP 9 Unmodified _STFRLCSEP_ 0 0 0 REV__SLC22A6|p.F259Lfs*27|3|0.38|ENSG00000197901|chr11:62981862-62981862|A/-|frameshift_variant REV__SLC22A6|p.F259Lfs*27|3|0.38|ENSG00000197901|chr11:62981862-62981862|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 520.247492 1038.48043 0.50472 0.00026258 -0.67331 -0.00035029 -0.16859 -8.7709E-05 520.2472115359784 81.602 1.0157 81.602 81.127 82.143 0 0.034848 -0.00061466 NaN 29.082 106 28 5 NaN NaN NaN NaN 0 NaN NaN 0 69046000 + 43811 19371 29086 29106 -0.037270667052325734 STFRLCSEP 9 Unmodified _STFRLCSEP_ 0 0 0 REV__SLC22A6|p.F259Lfs*27|3|0.38|ENSG00000197901|chr11:62981862-62981862|A/-|frameshift_variant REV__SLC22A6|p.F259Lfs*27|3|0.38|ENSG00000197901|chr11:62981862-62981862|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 520.247492 1038.48043 -0.26356 -0.00013712 0.12804 6.6614E-05 -0.13552 -7.0504E-05 520.2476345878875 85.236 1.0528 81.572 81.057 82.11 -3.6641 0.0044317 0.00021914 NaN 29.082 118 29 5 NaN NaN NaN NaN 0 NaN NaN 0 85507000 + 43812 19371 29086 29106 -0.037270667052325734 STFRLCSEP 9 Unmodified _STFRLCSEP_ 0 0 0 REV__SLC22A6|p.F259Lfs*27|3|0.38|ENSG00000197901|chr11:62981862-62981862|A/-|frameshift_variant REV__SLC22A6|p.F259Lfs*27|3|0.38|ENSG00000197901|chr11:62981862-62981862|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 520.247492 1038.48043 -0.47277 -0.00024596 0.36302 0.00018886 -0.10974 -5.7094E-05 520.2477424516849 85.488 1.1499 81.579 81.049 82.199 -3.9093 0.011829 0.00046364 NaN 29.082 106 32 4 NaN NaN NaN NaN 0 NaN NaN 0 66353000 + 43813 19371 29086 29106 -0.037270667052325734 STFRLCSEP 9 Unmodified _STFRLCSEP_ 0 0 0 REV__SLC22A6|p.F259Lfs*27|3|0.38|ENSG00000197901|chr11:62981862-62981862|A/-|frameshift_variant REV__SLC22A6|p.F259Lfs*27|3|0.38|ENSG00000197901|chr11:62981862-62981862|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 520.247492 1038.48043 0.063475 3.3023E-05 -0.15569 -8.1E-05 -0.092219 -4.7977E-05 520.2475262628357 85.228 1.2074 81.516 81.015 82.222 -3.7117 -0.051109 -7.6084E-05 NaN 29.082 120 34 5 NaN NaN NaN NaN 0 NaN NaN 0 77261000 + 43814 19371 29086 29106 -0.037270667052325734 STFWYSGL 8 Unmodified _STFWYSGL_ 0 0 0 ENST00000421112.1_1_2:13142712-13143995:-|nuORF;ENST00000414661.1_1_2:13143779-13143995:-|nuORF ENST00000421112.1_1_2:13142712-13143995:-|nuORF ENST00000421112.1_1_2:13142712-13143995:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24456787109375 2 480.726718 959.438883 -0.15771 -7.5818E-05 -1.0727 -0.00051567 -1.2304 -0.00059149 480.72613846980414 52.368 0.48402 49.486 49.273 49.757 -2.8824 19 13 2 0 0 0 0.89552 1 9960 9960 19.439 0 1 1027400 43815 9606 29087 29107 43173 43173 -0.04245879402230912 STGADAGPCPS 11 Unmodified _STGADAGPCPS_ 0 0 0 nc|ENSG00000184730|Q0VD83-2|APOBR;APOBR|p.L868Ffs*2|1|0.24|ENSG00000184730|chr16:28497664-28497664|G/-|frameshift_variant;nc|ENSG00000184730|Q0VD83-3|APOBR;ENSG00000184730|ENST00000564831|APOBR nc|ENSG00000184730|Q0VD83-2|APOBR nc|ENSG00000184730|Q0VD83-2|APOBR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2549743652344 2 481.697832 961.38111 0.3215 0.00015486 -0.31499 -0.00015173 0.0065064 3.1341E-06 481.6977487252556 28.636 0.20986 26.881 26.736 26.946 -1.7552 8 5 2 0 0 0 0.89764 1 4842 4842 17.113 6.289 1 393800 43816 186 29088 29108 43174 43174 -0.10112509389978186 STGAPVMRP 9 Unmodified _STGAPVMRP_ 0 0 0 MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22991943359375 2 458.23947 914.464386 -1.0917 -0.00050027 1.2566 0.00057583 0.16489 7.5561E-05 458.2400396736449 19.004 0.52061 17.369 17.078 17.598 -1.6351 24 14 2 0 0 0 0.84208 1 2887 2887 11.64 3.047 1 491690 43817 12126 29089 29109 43175 43175 0.003732718485366604 STGIEVARP 9 Unmodified _STGIEVARP_ 0 0 0 ENST00000535325.5_1_3:45961332-45961530:-|nuORF ENST00000535325.5_1_3:45961332-45961530:-|nuORF ENST00000535325.5_1_3:45961332-45961530:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2567138671875 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 31.338 1 29.311 28.811 29.811 -2.0264 0 0 0 0.23508 1 5406 5406 11.64 0 1 43818 11015 29090 29110 43176 43176 0.030685968920806772 STGIVIVKY 9 Unmodified _STGIVIVKY_ 0 0 0 tr|U7SYH7|U7SYH7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00884PE=4SV=1 tr|U7SYH7|U7SYH7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00884PE=4SV=1 tr|U7SYH7|U7SYH7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00884PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2656555175781 2 490.294768 978.574983 1.2042 0.00059042 -0.93317 -0.00045753 0.27104 0.00013289 490.2942281984316 26.404 0.3781 24.622 24.416 24.794 -1.7821 24 10 3 0 0 0 0.84208 1 4644 4644 3.9444 3.9444 1 1676600 43819 26281 29091 29111 43177 43177 0.08483815108422732 STGLPEKAQ 9 Unmodified _STGLPEKAQ_ 0 0 0 ENST00000430334.7_1_17:43514711-43515125:-|nuORF ENST00000430334.7_1_17:43514711-43515125:-|nuORF ENST00000430334.7_1_17:43514711-43515125:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.238525390625 2 465.748182 929.481811 0.56581 0.00026353 -0.93146 -0.00043383 -0.36565 -0.0001703 465.74761342664374 29.485 0.42723 27.529 27.191 27.618 -1.9561 13 11 2 0 0 0 0.71527 1 5276 5276 25.399 14.575 1 359280 43820 9774 29092 29112 43178 43178 0.014248906551870277 STGLQCEMDPV 11 Unmodified _STGLQCEMDPV_ 0 0 0 ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;nc|ENSG00000162601|Q5VVJ2-3|MYSM1 ENSG00000162601|ENST00000472487|MYSM1 ENSG00000162601|ENST00000472487|MYSM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.255126953125 2 590.254656 1178.49476 NaN NaN NaN NaN NaN NaN NaN 44.528 1 41.761 41.261 42.261 -2.7661 0 0 0 0.22632 1 8063 8063 0.0059557 0.0025752 1 43821 5346 29093 29113 43179 43179 -0.08734782339251979 STGNMLDNV 9 Unmodified _STGNMLDNV_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1781311035156 3 317.479775 949.417496 0.32442 0.000103 0.13301 4.2227E-05 0.45742 0.00014522 317.47974789885376 30.496 1.4038 28.604 28.032 29.436 -1.8928 92 39 3 0 0 0 0.78802 1 5239 5239 2.2828 0.3764 1 2759000 43822 7388 29094 29114 43180 43180 -0.05923632493261266 STGNMLDNV 9 Unmodified _STGNMLDNV_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 317.479775 949.417496 -0.4408 -0.00013995 0.88486 0.00028093 0.44406 0.00014098 317.479996356951 28.875 1.5011 28.875 28.18 29.681 0 0.19999 0.00035955 NaN 2.2828 105 42 3 NaN NaN NaN NaN 0 NaN NaN 0 5274600 43823 7388 29094 29114 -0.05923632493261266 STGNMLDNV 9 Unmodified _STGNMLDNV_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 317.479775 949.417496 0.15015 4.767E-05 0.35573 0.00011294 0.50588 0.00016061 317.4798323389861 30.751 1.232 28.634 28.011 29.243 -2.1167 -0.041131 -0.00014442 NaN 2.2828 70 34 3 NaN NaN NaN NaN 0 NaN NaN 0 1919000 43824 7388 29094 29114 -0.05923632493261266 STGNMLDNV 9 Unmodified _STGNMLDNV_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 317.479775 949.417496 0.32442 0.000103 0.13301 4.2227E-05 0.45742 0.00014522 317.47974789885376 30.496 1.4038 28.604 28.032 29.436 -1.8928 -0.071676 -0.00035654 NaN 2.2828 92 39 3 NaN NaN NaN NaN 0 NaN NaN 0 2759000 43825 7388 29094 29114 -0.05923632493261266 STGNMLDNV 9 Unmodified _STGNMLDNV_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 317.479775 949.417496 -0.15697 -4.9836E-05 0.68811 0.00021846 0.53113 0.00016862 317.4799332170226 30.662 1.4024 28.588 27.972 29.374 -2.0743 -0.087178 0.00017216 NaN 2.2828 84 39 3 NaN NaN NaN NaN 0 NaN NaN 0 1617300 43826 7388 29094 29114 -0.05923632493261266 STGPPFLLSF 10 Unmodified _STGPPFLLSF_ 0 0 0 ENST00000542977.5_2_11:71746988-71752151:-|nuORF ENST00000542977.5_2_11:71746988-71752151:-|nuORF ENST00000542977.5_2_11:71746988-71752151:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2841796875 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 122.98 1 118.39 117.89 118.89 -4.5926 0 0 0 0.22535 1 23673 23673 20.454 7.9221 1 43827 11095 29095 29115 43181 43181 0.024552247287601858 STGSLGSSPGA 11 Unmodified _STGSLGSSPGA_ 0 0 0 nc|ENSG00000179750|Q9UH17-2|APOBEC3B nc|ENSG00000179750|Q9UH17-2|APOBEC3B nc|ENSG00000179750|Q9UH17-2|APOBEC3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2340393066406 2 460.719621 919.42469 0.97874 0.00045093 -0.48187 -0.00022201 0.49687 0.00022892 460.71940044454703 26.632 0.81828 24.85 24.383 25.202 -1.7821 58 23 3 0 0 0 0.62025 1 4680 4680 21.537 10.713 1 2581600 43828 12490 29096 29116 43182 43182 -0.03824576621173037 STGTKFALKL 10 Unmodified _STGTKFALKL_ 0 0 0 ENSG00000186364|ENST00000334513|NUDT17 ENSG00000186364|ENST00000334513|NUDT17 ENSG00000186364|ENST00000334513|NUDT17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2864379882812 2 533.318774 1064.623 NaN NaN NaN NaN NaN NaN NaN 75.388 1 71.754 71.254 72.254 -3.6337 0 0 0 0.22588 1 14328 14328 10.824 0 1 43829 7053 29097 29117 43183 43183 0.09326889028443475 STGTNKRCL 9 Unmodified _STGTNKRCL_ 0 0 0 REV__ENST00000419546.1_1_7:88194857-88195094:-|nuORF REV__ENST00000419546.1_1_7:88194857-88195094:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25244140625 2 490.253108 978.491664 NaN NaN NaN NaN NaN NaN NaN 24.651 1 24.651 24.151 25.151 0 0 0 0 0.23508 1 4254 4254 11.64 0.81637 1 + 43830 21496 29098 29118 43184 43184 0.0015575538891425822 STGVPSPPTA 10 Unmodified _STGVPSPPTA_ 0 0 0 REV__ENSG00000132478|ENST00000589666|UNK REV__ENSG00000132478|ENST00000589666|UNK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2420654296875 2 457.234907 912.455261 0.2745 0.00012551 3.9326 0.0017981 4.2071 0.0019236 457.2348113065787 36.149 1.0916 33.872 33.49 34.582 -2.2766 75 30 4 0 0 0 0.40156 1 6345 6345 36.127 5.9022 1 2392800 + 43831 16119 29099 29119 43185 43185 -0.004467982361347822 STGVPSPPTA 10 Unmodified _STGVPSPPTA_ 0 0 0 REV__ENSG00000132478|ENST00000589666|UNK REV__ENSG00000132478|ENST00000589666|UNK MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 457.234907 912.455261 0.078629 3.5952E-05 4.105 0.0018769 4.1836 0.0019129 457.2348968437209 36.22 1.1102 33.872 33.406 34.516 -2.3479 -0.00010677 6.8153E-05 NaN 36.127 73 31 4 NaN NaN NaN NaN 0 NaN NaN 0 2316900 + 43832 16119 29099 29119 -0.004467982361347822 STGVPSPPTA 10 Unmodified _STGVPSPPTA_ 0 0 0 REV__ENSG00000132478|ENST00000589666|UNK REV__ENSG00000132478|ENST00000589666|UNK MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 457.234907 912.455261 0.2745 0.00012551 3.9326 0.0017981 4.2071 0.0019236 457.2348113065787 36.149 1.0916 33.872 33.49 34.582 -2.2766 0.00010677 -8.949E-05 NaN 36.127 75 30 4 NaN NaN NaN NaN 0 NaN NaN 0 2392800 + 43833 16119 29099 29119 -0.004467982361347822 STHPYAAAP 9 Unmodified _STHPYAAAP_ 0 0 0 REV__RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant REV__RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2237243652344 2 457.721967 913.429381 0.13073 5.9836E-05 0.04076 1.8657E-05 0.17149 7.8493E-05 457.72191262901134 55.684 0.71173 55.684 55.369 56.081 0 33 19 2 0 0 0 0.16442 1 10672 10672 42.095 11.87 1 1614800 + 43834 16678 29100 29120 43186 43186 -0.030796476877753776 STHPYAAAP 9 Unmodified _STHPYAAAP_ 0 0 0 REV__RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant REV__RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23870849609375 2 457.721967 913.429381 0.097145 4.4465E-05 0.078414 3.5892E-05 0.17556 8.0357E-05 457.7218964639377 58.941 0.73195 55.736 55.368 56.1 -3.2052 38 20 2 0 0 0 0.44262 1 11073 11073 23.148 5.0134 1 1638800 + 43835 16678 29100 29120 43187 43187 -0.030796476877753776 STHPYAAAP 9 Unmodified _STHPYAAAP_ 0 0 0 REV__RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant REV__RERE|p.T1358Dfs*37|1|0.36|ENSG00000142599|chr1:8358464-8358465|-/G|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 457.721967 913.429381 0.13073 5.9836E-05 0.04076 1.8657E-05 0.17149 7.8493E-05 457.72191262901134 55.684 0.71173 55.684 55.369 56.081 0 -0.045767 -8.2222E-05 NaN 42.095 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1614800 + 43836 16678 29100 29120 -0.030796476877753776 STHQNKHLQ 9 Unmodified _STHQNKHLQ_ 0 0 0 REV__ENST00000447898.1_22:16151684-16151795:-|nuORF REV__ENST00000447898.1_22:16151684-16151795:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.793212890625 2 546.780879 1091.5472 -0.38768 -0.00021198 0.61215 0.00033471 0.22446 0.00012273 546.7812168364638 15.369 0.38276 14.255 14.061 14.443 -1.1142 22 10 4 0 0 0 0.7009 1 2350 2350 6.2058 0 1 5758500 + 43837 21776 29101 29121 43188 43188 0.00509304900879215 STINHSKE 8 Unmodified _STINHSKE_ 0 0 0 ENSG00000162739|ENST00000368057|SLAMF6;nc|ENSG00000162739|Q96DU3-2|SLAMF6;nc|ENSG00000162739|Q96DU3-3|SLAMF6 ENSG00000162739|ENST00000368057|SLAMF6 ENSG00000162739|ENST00000368057|SLAMF6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2291259765625 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 96.132 1 91.897 91.397 92.397 -4.2348 0 0 0 0.18481 1 18354 18354 3.5871 0 1 43838 5363 29102 29122 43189 43189 -0.0148856652166387 STIPTIKYEE 10 Unmodified _STIPTIKYEE_ 0 0 0 REV__RPS6KA6|p.Q571Ffs*11|1|0.02|ENSG00000072133|chrX:84102102-84102103|-/AA|frameshift_variant REV__RPS6KA6|p.Q571Ffs*11|1|0.02|ENSG00000072133|chrX:84102102-84102103|-/AA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.269287109375 2 590.808436 1179.60232 0.18958 0.000112 0.076083 4.495E-05 0.26566 0.00015695 590.8084573938444 61.142 0.6255 57.902 57.581 58.206 -3.2395 36 17 3 0 0 0 0.91149 1 11494 11494 1.4819 0 1 2026900 + 43839 14281 29103 29123 43190 43190 0.019702538581668705 STITFNITF 9 Unmodified _STITFNITF_ 0 0 0 REV__MUC16|p.N13489S|1|0.21|ENSG00000181143|chr19:8889842-8889842|T/C|missense_variant REV__MUC16|p.N13489S|1|0.21|ENSG00000181143|chr19:8889842-8889842|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2723999023438 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 166.65 1 166.65 166.15 167.15 0 0 0 0 0.19512 1 33970 33970 0.87518 0.74736 1 + 43840 23889 29104 29124 43191 43191 0.013946343490715662 STKAVTPNP 9 Unmodified _STKAVTPNP_ 0 0 0 REV__ENST00000573539.5_1_17:3442880-3458098:-|nuORF REV__ENST00000573539.5_1_17:3442880-3458098:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2236328125 2 457.750724 913.486896 0.54784 0.00025077 0.034882 1.5967E-05 0.58272 0.00026674 457.7506579691153 22.541 0.58454 21.036 20.63 21.215 -1.5045 22 16 2 0 0 0 0.80521 1 3819 3819 10.824 2.9138 1 176270 + 43841 17963 29105 29125 43192 43192 0.026691945177958587 STKFRLVTL 9 Unmodified _STKFRLVTL_ 0 0 0 REV__ENST00000495650.1_3_1:179834953-179846902:-|nuORF REV__ENST00000495650.1_3_1:179834953-179846902:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2728271484375 2 532.826766 1063.63898 NaN NaN NaN NaN NaN NaN NaN 122.78 1 118.19 117.69 118.69 -4.5926 0 0 0 0.19636 1 23635 23635 2.4985 0 1 + 43842 22379 29106 29126 43193 43193 0.10970595265393968 STKGSLPQY 9 Unmodified _STKGSLPQY_ 0 0 0 REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2583923339844 2 490.756007 979.497461 -0.068964 -3.3844E-05 0.46643 0.0002289 0.39746 0.00019506 490.7561994145847 38.735 0.49313 36.33 36.162 36.655 -2.4049 19 13 2 0 0 0 0.80521 1 6871 6871 10.824 3.5347 1 654430 + 43843 15928 29107 29127 43194 43194 0.006891771722280282 STKLLVNG 8 Unmodified _STKLLVNG_ 0 0 0 REV__tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 REV__tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 416.535888671875 2 416.25036 830.486168 -0.23848 -9.9266E-05 0.09236 3.8445E-05 -0.14612 -6.0821E-05 416.2503072867808 74.663 0.71049 71.299 70.987 71.698 -3.3643 32 19 2 0 0 0 0.86877 1 14630 14630 1.7423 1.1154 1 2752700 + 43844 25331 29108 29128 43195 43195 0.06414399868754117 STKLLVNG 8 Unmodified _STKLLVNG_ 0 0 0 REV__tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 REV__tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 416.25036 830.486168 0.12751 5.3075E-05 -0.64589 -0.00026885 -0.51838 -0.00021578 416.2499404271376 75.038 0.79816 71.315 70.854 71.652 -3.7227 -0.011407 -0.00021232 NaN 1.7423 34 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1539900 + 43845 25331 29108 29128 0.06414399868754117 STKLLVNG 8 Unmodified _STKLLVNG_ 0 0 0 REV__tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 REV__tr|U7T2I7|U7T2I7_FUSNUPhosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsXPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 416.25036 830.486168 -0.056241 -2.3411E-05 -0.77263 -0.00032161 -0.82887 -0.00034502 416.2498775437509 74.96 1.0108 71.366 70.849 71.86 -3.594 0.039388 -0.00031783 NaN 1.7423 43 28 2 NaN NaN NaN NaN 0 NaN NaN 0 2480500 + 43846 25331 29108 29128 0.06414399868754117 STKRRPRRKKR 11 Unmodified _STKRRPRRKKR_ 0 0 0 ENST00000280571.9_1_12:123907644-123915066:-|nuORF;RILPL2|p.N129Kfs*57|1|0.09|ENSG00000150977|chr12:123430612-123430613|-/T|frameshift_variant ENST00000280571.9_1_12:123907644-123915066:-|nuORF ENST00000280571.9_1_12:123907644-123915066:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2970275878906 3 490.318436 1467.93348 NaN NaN NaN NaN NaN NaN NaN 155.32 1 155.32 154.82 155.82 0 0 0 0 0.22632 1 31138 31138 0.094841 0.094841 1 43847 8438 29109 29129 43196 43196 0.21823021527643505 STLDKQTNW 9 Unmodified _STLDKQTNW_ 0 0 0 NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant;nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;ENSG00000188158|ENST00000676302|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7726440429688 2 546.769645 1091.52474 0.18827 0.00010294 -0.037912 -2.0729E-05 0.15036 8.2212E-05 546.7695777215364 55.88 0.99169 55.88 55.335 56.327 0 69 27 3 0 0 0 0.2219 1 10670 10670 36.127 4.8587 1 6157500 43848 7154 29110 29130 43197 43197 -0.017363392873676275 STLDKQTNW 9 Unmodified _STLDKQTNW_ 0 0 0 NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant;nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;ENSG00000188158|ENST00000676302|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.769645 1091.52474 0.13951 7.6279E-05 0.03509 1.9186E-05 0.1746 9.5465E-05 546.7696126504239 58.969 1.1901 56.058 55.475 56.665 -2.9105 0.015919 3.6753E-06 NaN 36.127 62 33 2 NaN NaN NaN NaN 0 NaN NaN 0 8162200 43849 7154 29110 29130 -0.017363392873676275 STLDKQTNW 9 Unmodified _STLDKQTNW_ 0 0 0 NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant;nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;ENSG00000188158|ENST00000676302|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.769645 1091.52474 0.19319 0.00010563 -0.023478 -1.2837E-05 0.16971 9.2793E-05 546.7695783315227 59.349 1.1193 56.125 55.484 56.603 -3.2237 0.082635 -6.0371E-05 NaN 36.127 80 31 4 NaN NaN NaN NaN 0 NaN NaN 0 6462400 43850 7154 29110 29130 -0.017363392873676275 STLFLLGYV 9 Unmodified _STLFLLGYV_ 0 0 0 ENST00000498392.1_1_3:49070551-49070749:-|nuORF ENST00000498392.1_1_3:49070551-49070749:-|nuORF ENST00000498392.1_1_3:49070551-49070749:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.1964111328125 3 338.195304 1011.56408 NaN NaN NaN NaN NaN NaN NaN 110.29 1 105.8 105.3 106.3 -4.4915 0 0 0 0.23508 1 21169 21169 2.7352 0.89096 1 43851 10601 29111 29131 43198 43198 0.05876412734153291 STLGGAVSHS 10 Unmodified _STLGGAVSHS_ 0 0 0 ENST00000473038.5_1_1:46033610-46035625:+|nuORF ENST00000473038.5_1_1:46033610-46035625:+|nuORF ENST00000473038.5_1_1:46033610-46035625:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2307434082031 2 458.230156 914.445759 -0.21896 -0.00010034 0.44789 0.00020524 0.22893 0.0001049 458.23033238578546 21.613 0.45533 20.228 20.072 20.527 -1.3847 23 12 2 0 0 0 0.59928 1 3398 3398 19.257 0 1 2670200 43852 10235 29112 29132 43199 43199 -0.0148856652166387 STLGGAVSHS 10 Unmodified _STLGGAVSHS_ 0 0 0 ENST00000473038.5_1_1:46033610-46035625:+|nuORF ENST00000473038.5_1_1:46033610-46035625:+|nuORF ENST00000473038.5_1_1:46033610-46035625:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2306213378906 2 458.230156 914.445759 -0.64671 -0.00029634 0.93979 0.00043064 0.29308 0.0001343 458.2305646554005 21.937 0.51357 20.216 20.019 20.533 -1.7211 23 14 2 0 0 0 0.59928 1 3439 3439 19.257 3.1079 1 1507100 43853 10235 29112 29132 43200 43200 -0.0148856652166387 STLGNNGP 8 Unmodified _STLGNNGP_ 0 0 0 ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 380.19293212890625 2 380.185217 758.355882 NaN NaN NaN NaN NaN NaN NaN 29.717 1 29.717 29.217 30.217 0 0 0 0 0.22684 1 5321 5321 3.5871 3.4592 1 43854 1241 29113 29133 43201 43201 -0.03296196130224871 STLKRKKSKK 10 Unmodified _STLKRKKSKK_ 0 0 0 REV__ENSG00000125482|ENST00000334270|TTF1 REV__ENSG00000125482|ENST00000334270|TTF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2786865234375 2 602.398422 1202.78229 NaN NaN NaN NaN NaN NaN NaN 134.03 1 129.39 128.89 129.89 -4.6399 0 0 0 2.8426 1 26426 26426 0.69767 0 1 + 43855 15816 29114 29134 43202 43202 0.18901022376462606 STLNREPL 8 Unmodified _STLNREPL_ 0 0 0 REV__MPHOSPH9|p.K886Rfs*15|1|0.31|ENSG00000051825|chr12:123165407-123165414|TTTGCTTT/-|frameshift_variant REV__MPHOSPH9|p.K886Rfs*15|1|0.31|ENSG00000051825|chr12:123165407-123165414|TTTGCTTT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2479248046875 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 62.941 1 59.685 59.185 60.185 -3.2567 0 0 0 0.21452 1 11806 11806 13.508 0.46542 1 + 43856 14090 29115 29135 43203 43203 0.03068596892092046 STLPDVTEV 9 Unmodified _STLPDVTEV_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2496032714844 2 480.747847 959.481142 -0.26657 -0.00012815 0.18914 9.093E-05 -0.077422 -3.7221E-05 480.7478822860588 111.26 0.75894 106.84 106.48 107.23 -4.4231 52 21 4 0 0 0 0.069179 3 21885 21885;21928;21932 48.346 17.934 1 6300800 43857 190 29116 29136 43204;43205;43206 43204 -0.00021948784524283838 STLPDVTEV 9 Unmodified _STLPDVTEV_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24945068359375 2 480.747847 959.481142 -0.066966 -3.2194E-05 0.036749 1.7667E-05 -0.030217 -1.4527E-05 480.74776180197085 111.48 0.62951 106.99 106.64 107.27 -4.4915 38 17 3 0 0 0 0.066709 2 21402 21402;21406 32.305 23.19 1 6050200 43858 190 29116 29136 43207;43208 43207 -0.00021948784524283838 STLPDVTEV 9 Unmodified _STLPDVTEV_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24951171875 2 480.747847 959.481142 0.56124 0.00026981 -0.46281 -0.0002225 0.098426 4.7318E-05 480.74752045048274 111.16 0.58965 106.93 106.62 107.21 -4.2289 39 16 3 0 0 0 0.1793 1 21401 21401 39.957 7.6518 1 4555000 43859 190 29116 29136 43209 43209 -0.00021948784524283838 STLPSCPSL 9 Carbamidomethyl (C) _STLPSC(Carbamidomethyl (C))PSL_ STLPSC(1)PSL STLPSC(48)PSL 0 1 0 REV__ARHGAP1|p.L237Rfs*135|1|0.37|ENSG00000175220|chr11:46680673-46680673|A/-|frameshift_variant REV__ARHGAP1|p.L237Rfs*135|1|0.37|ENSG00000175220|chr11:46680673-46680673|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77764892578125 2 481.236593 960.458632 0.01144 5.5053E-06 -0.52721 -0.00025371 -0.51577 -0.00024821 481.23630111684673 76.625 0.83253 73.21 72.83 73.662 -3.4151 62 23 3 0 0 0 0.12183 1 14918 14918 48.346 12.302 1 6351100 + 43860 13096 29117 29137 43210 43210 15 -0.023178714537721135 STLQNRSLY 9 Unmodified _STLQNRSLY_ 0 0 0 REV__ENSG00000147324|ENST00000276282|MFHAS1 REV__ENSG00000147324|ENST00000276282|MFHAS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2849731445312 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 54.145 1 54.145 53.645 54.645 0 0 0 0 0.23508 1 10323 10323 12.532 1.7076 1 + 43861 16932 29118 29138 43211 43211 0.019316534665676954 STLQNWQTT 9 Unmodified _STLQNWQTT_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT;ENST00000443317.1_1_20:32802260-32803361:-|nuORF;XPOT|p.F594Lfs*9|1|0.32|ENSG00000184575|chr12:64430089-64430089|T/-|frameshift_variant;XPOT|p.L602Hfs*4|1|0.04|ENSG00000184575|chr12:64430115-64430116|-/A|frameshift_variant;ENST00000542958.5_1_12:64816967-64819028:+|nuORF ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.26416015625 2 539.76182 1077.50909 0.44806 0.00024185 -0.44507 -0.00024023 0.0029914 1.6146E-06 539.7615290411529 50.468 0.67965 50.468 50.095 50.775 0 59 19 4 0 0 0 0.5354 1 9539 9539 18.146 3.3081 1 16545000 43862 6921 29119 29139 43212 43212 -0.02656625804434043 STLQNWQTT 9 Unmodified _STLQNWQTT_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT;ENST00000443317.1_1_20:32802260-32803361:-|nuORF;XPOT|p.F594Lfs*9|1|0.32|ENSG00000184575|chr12:64430089-64430089|T/-|frameshift_variant;XPOT|p.L602Hfs*4|1|0.04|ENSG00000184575|chr12:64430115-64430116|-/A|frameshift_variant;ENST00000542958.5_1_12:64816967-64819028:+|nuORF ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 539.76182 1077.50909 -0.029606 -1.598E-05 -0.043995 -2.3747E-05 -0.073602 -3.9727E-05 539.7617599019832 53.318 0.62839 50.435 50.141 50.769 -2.8837 -0.00068531 0.00016036 NaN 18.146 54 17 4 NaN NaN NaN NaN 0 NaN NaN 0 29020000 43863 6921 29119 29139 -0.02656625804434043 STLQNWQTT 9 Unmodified _STLQNWQTT_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT;ENST00000443317.1_1_20:32802260-32803361:-|nuORF;XPOT|p.F594Lfs*9|1|0.32|ENSG00000184575|chr12:64430089-64430089|T/-|frameshift_variant;XPOT|p.L602Hfs*4|1|0.04|ENSG00000184575|chr12:64430115-64430116|-/A|frameshift_variant;ENST00000542958.5_1_12:64816967-64819028:+|nuORF ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 539.76182 1077.50909 0.17542 9.4683E-05 -0.22905 -0.00012363 -0.053638 -2.8952E-05 539.761692699391 53.534 0.80562 50.446 50.111 50.917 -3.0876 0.011017 -3.9413E-05 NaN 18.146 56 22 4 NaN NaN NaN NaN 0 NaN NaN 0 30692000 43864 6921 29119 29139 -0.02656625804434043 STLQNWQTT 9 Unmodified _STLQNWQTT_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT;ENST00000443317.1_1_20:32802260-32803361:-|nuORF;XPOT|p.F594Lfs*9|1|0.32|ENSG00000184575|chr12:64430089-64430089|T/-|frameshift_variant;XPOT|p.L602Hfs*4|1|0.04|ENSG00000184575|chr12:64430115-64430116|-/A|frameshift_variant;ENST00000542958.5_1_12:64816967-64819028:+|nuORF ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 539.76182 1077.50909 0.033294 1.7971E-05 -0.01749 -9.4402E-06 0.015804 8.5303E-06 539.7617671815734 53.488 0.72211 50.392 50.103 50.825 -3.0954 -0.043112 0.00018898 NaN 18.146 50 20 3 NaN NaN NaN NaN 0 NaN NaN 0 31802000 43865 6921 29119 29139 -0.02656625804434043 STLSAHVTV 9 Unmodified _STLSAHVTV_ 0 0 0 ENSG00000182854|ENST00000332238|OR4F15 ENSG00000182854|ENST00000332238|OR4F15 ENSG00000182854|ENST00000332238|OR4F15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23785400390625 2 457.750724 913.486896 -0.036346 -1.6637E-05 -0.22884 -0.00010475 -0.26519 -0.00012139 457.7506710360116 63.164 1.7301 60.167 59.704 61.435 -2.9975 144 49 5 0 0 0 0.096847 1 12303 12303 52.268 0 1 379430000 43866 6815 29120 29140 43213 43213 0.02669194517818596 STLSKPAA 8 Unmodified _STLSKPAA_ 0 0 0 nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2 nc|ENSG00000065243|Q16513-4|PKN2 nc|ENSG00000065243|Q16513-4|PKN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.72161865234375 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 68.941 1 65.761 65.261 66.261 -3.1796 0 0 0 0.23664 1 13395 13395 3.2813 0 1 43867 1354 29121 29141 43214 43214 0.03254137943326896 STLSRVCCS 9 Unmodified _STLSRVCCS_ 0 0 0 REV__ENST00000554730.1_1_14:23233822-23235636:-|nuORF REV__ENST00000554730.1_1_14:23233822-23235636:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72271728515625 2 478.22042 954.426286 -0.22057 -0.00010548 1.597 0.00076374 1.3765 0.00065826 478.2211015778475 53.669 0.45693 50.785 50.52 50.977 -2.8837 18 12 2 0 0 0 0.62102 1 10218 10218 11.64 0 1 1516100 + 43868 22977 29122 29142 43215 43215 -0.05274982128435113 STLYEQPN 8 Unmodified _STLYEQPN_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 953.4490356445312 1 951.441802 950.434526 -0.15106 -0.00014373 -0.064648 -6.1509E-05 -0.21571 -0.00020523 951.4417633146359 54.243 1.0349 51.36 50.837 51.872 -2.8837 68 29 3 0 0 0 0.40222 1 10310 10310 32.305 3.2239 1 46479000 + 43869 16525 29123 29143 43216 43216 -0.04267388615812706 STLYEQPN 8 Unmodified _STLYEQPN_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 951.441802 950.434526 -0.15106 -0.00014373 -0.064648 -6.1509E-05 -0.21571 -0.00020523 951.4417633146359 54.243 1.0349 51.36 50.837 51.872 -2.8837 -0.04059 0.00023616 NaN 32.305 68 29 3 NaN NaN NaN NaN 0 NaN NaN 0 46479000 + 43870 16525 29123 29143 -0.04267388615812706 STLYEQPN 8 Unmodified _STLYEQPN_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2|SMARCC2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 951.441802 950.434526 0.095097 9.048E-05 -0.39838 -0.00037904 -0.30328 -0.00028856 951.4413375355613 54.496 1.1899 51.358 50.886 52.075 -3.1377 -0.042176 -8.1363E-05 NaN 32.305 74 33 3 NaN NaN NaN NaN 0 NaN NaN 0 42772000 + 43871 16525 29123 29143 -0.04267388615812706 STLYIDAF 8 Unmodified _STLYIDAF_ 0 0 0 REV__ENST00000460175.5_1_1:20396894-20397378:+|nuORF REV__ENST00000460175.5_1_1:20396894-20397378:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2461853027344 2 465.234376 928.454199 NaN NaN NaN NaN NaN NaN NaN 74.709 1 71.344 70.844 71.844 -3.3643 0 0 0 0.21323 1 14575 14575 14.582 1.0738 1 + 43872 21874 29124 29144 43217 43217 -0.012890126050479012 STLYRYIQ 8 Unmodified _STLYRYIQ_ 0 0 0 ENST00000380629.6_1_8:26270525-26270594:+|nuORF ENST00000380629.6_1_8:26270525-26270594:+|nuORF ENST00000380629.6_1_8:26270525-26270594:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.28125 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 94.217 1 94.217 93.717 94.717 0 0 0 0 0.20896 1 18447 18447 18.135 3.2967 1 43873 9319 29125 29145 43218 43218 0.025174564432290936 STMEGGTLKY 10 Unmodified _STMEGGTLKY_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.T943Pfs*5|1|0.19|ENSG00000197943|chr16:81934513-81934513|A/-|frameshift_variant ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7758178710938 2 543.760432 1085.50631 0.15445 8.3983E-05 -0.96305 -0.00052367 -0.8086 -0.00043969 543.7596361441608 62.477 0.3187 59.107 58.922 59.24 -3.3694 13 8 2 0 0 0 0.42762 1 11632 11632 12.228 11.819 1 869890 43874 7413 29126 29146 43219 43219 -0.033022172535766 STMEGGTLKY 10 Unmodified _STMEGGTLKY_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.T943Pfs*5|1|0.19|ENSG00000197943|chr16:81934513-81934513|A/-|frameshift_variant ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.760432 1085.50631 0.27507 0.00014957 -0.32358 -0.00017595 -0.048514 -2.638E-05 543.7601010211218 61.934 0.31496 58.972 58.864 59.179 -2.9614 -0.067483 0.0002623 NaN 12.228 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 929370 43875 7413 29126 29146 -0.033022172535766 STMHKPTQ 8 Unmodified _STMHKPTQ_ 0 0 0 REV__ENST00000263228.3_1_9:33918836-33919046:+|nuORF REV__ENST00000263228.3_1_9:33918836-33919046:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25341796875 2 465.229102 928.443651 0.52787 0.00024558 -1.0627 -0.0004944 -0.53482 -0.00024881 465.22864447627643 30.031 3.5999 27.957 26.893 30.493 -2.0743 269 102 4 0 0 0 0.56049 1 4908 4908 24.674 6.5389 1 14243000 + 43876 20206 29127 29147 43220 43220 -0.023433185311205307 STMLARQL 8 Unmodified _STMLARQL_ 0 0 0 REV__ECT2|p.R852Q|1|0.23|ENSG00000114346|chr3:172816737-172816737|G/A|missense_variant REV__ECT2|p.R852Q|1|0.23|ENSG00000114346|chr3:172816737-172816737|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22869873046875 2 460.25512 918.495686 NaN NaN NaN NaN NaN NaN NaN 102.61 1 98.422 97.922 98.922 -4.1861 0 0 0 0.21452 1 20169 20169 13.508 2.3934 1 + 43877 13773 29128 29148 43221 43221 0.03317844882644749 STMLNRPP 8 Unmodified _STMLNRPP_ 0 0 0 REV__ENST00000489602.1_1_3:157213259-157223189:-|nuORF REV__ENST00000489602.1_1_3:157213259-157223189:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2391052246094 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 24.634 1 22.781 22.281 23.281 -1.8534 0 0 0 0.21486 1 4014 4014 5.7604 0.52976 1 + 43878 22293 29129 29149 43222 43222 0.003732718485366604 STMNKLRKY 9 Unmodified _STMNKLRKY_ 0 0 0 REV__ENSG00000163823|ENST00000296140|CCR1 REV__ENSG00000163823|ENST00000296140|CCR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21240234375 3 380.877981 1139.61211 0.30693 0.0001169 -0.447 -0.00017025 -0.14007 -5.335E-05 380.87782592498274 87.289 0.77537 83.326 82.913 83.688 -3.9634 60 21 4 0 0 0 0.72108 1 16562 16562 5.2969 1.4206 1 4953900 + 43879 17620 29130 29150 43223 43223 0.04789163382542938 STMRDEAFD 9 Unmodified _STMRDEAFD_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5627746582031 3 357.818568 1070.43387 -0.34288 -0.00012269 0.99346 0.00035548 0.65058 0.00023279 357.8188830977905 74.582 0.63804 71.217 70.849 71.487 -3.3643 28 17 2 0 0 0 0.6427 1 14584 14584 10.151 5.2536 1 1906200 43880 3296 29131 29151 43224 43224 -0.09852551327162473 STMRDEAFD 9 Unmodified _STMRDEAFD_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5635681152344 3 357.818568 1070.43387 0.16242 5.8118E-05 0.3074 0.00010999 0.46982 0.00016811 357.81864925131356 74.89 0.52144 71.214 70.968 71.49 -3.6764 24 14 2 0 0 0 0.86168 1 14134 14134 11.518 10.036 1 1857900 43881 3296 29131 29151 43225 43225 -0.09852551327162473 STMRDEAFD 9 Unmodified _STMRDEAFD_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5635986328125 3 357.818568 1070.43387 -0.36561 -0.00013082 0.97836 0.00035008 0.61275 0.00021925 357.81887580902514 74.705 0.52283 71.111 70.884 71.407 -3.594 27 14 2 0 0 0 0.65397 1 14193 14193 20.581 17.3 1 3105800 43882 3296 29131 29151 43226 43226 -0.09852551327162473 STMRDEAFD 9 Unmodified _STMRDEAFD_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 357.818568 1070.43387 -0.4012 -0.00014356 1.3347 0.00047759 0.93352 0.00033403 357.81900011246404 71.134 0.48177 71.134 70.8 71.282 0 -0.035086 0.00047989 NaN 10.151 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2327800 43883 3296 29131 29151 -0.09852551327162473 STMRDEAFD 9 Unmodified _STMRDEAFD_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.818568 1070.43387 -0.34288 -0.00012269 0.99346 0.00035548 0.65058 0.00023279 357.8188830977905 74.582 0.63804 71.217 70.849 71.487 -3.3643 0.048376 0.00011356 NaN 10.151 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1906200 43884 3296 29131 29151 -0.09852551327162473 STNGCNGA 8 Unmodified _STNGCNGA_ 0 0 0 REV__ENSG00000118600|ENST00000261234|RXYLT1 REV__ENSG00000118600|ENST00000261234|RXYLT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 362.138671875 2 362.139953 722.265352 NaN NaN NaN NaN NaN NaN NaN 117.91 1 113.5 113 114 -4.4088 0 0 0 0.2343 1 22692 22692 0.12286 0.11459 1 + 43885 15559 29132 29152 43227 43227 -0.10688988450169745 STNKEKPD 8 Unmodified _STNKEKPD_ 0 0 0 REV__ENSG00000010292|ENST00000315579|NCAPD2 REV__ENSG00000010292|ENST00000315579|NCAPD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2315979003906 2 459.729989 917.445425 0.2651 0.00012188 0.18887 8.6828E-05 0.45397 0.0002087 459.7300143599207 29.843 0.52034 29.843 29.61 30.13 0 21 14 2 0 0 0 0.60622 1 5329 5329 21.747 3.6117 1 816120 + 43886 13918 29133 29153 43228 43228 -0.016599862415318967 STNLTHTAVHY 11 Unmodified _STNLTHTAVHY_ 0 0 0 sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1 sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1 sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76611328125 2 622.306926 1242.5993 0.093676 5.8295E-05 0.19767 0.00012301 0.29135 0.00018131 622.3069506649058 45.87 0.59082 43.003 42.607 43.198 -2.8665 27 16 3 0 0 0 0.78079 1 8376 8376 6.2058 0.47393 1 2453900 43887 25750 29134 29154 43229 43229 -0.012295764760210659 STNMSPQYGP 10 Unmodified _STNMSPQYGP_ 0 0 0 REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2815551757812 2 541.234581 1080.45461 0.22698 0.00012285 -0.040344 -2.1835E-05 0.18663 0.00010101 541.2346255673856 60.131 0.81403 56.907 56.498 57.312 -3.2237 34 22 2 0 0 0 0.64074 1 11220 11220 21.537 0 1 1045400 + 43888 13114 29135 29155 43230 43230 -0.08239960947503278 STPAGILHY 9 Unmodified _STPAGILHY_ 0 0 0 REV__SLITRK3|p.S630Y|1|0.45|ENSG00000121871|chr3:165188942-165188942|G/T|missense_variant REV__SLITRK3|p.S630Y|1|0.45|ENSG00000121871|chr3:165188942-165188942|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24212646484375 2 479.753267 957.491981 -0.29056 -0.0001394 0.27505 0.00013196 -0.015505 -7.4387E-06 479.7533668296587 94.151 1.1893 94.151 93.54 94.73 0 107 33 4 0 0 0 0.46882 1 18446 18446 23.148 1.4018 1 23767000 + 43889 24656 29136 29156 43231 43231 0.011534983804153853 STPAGILHY 9 Unmodified _STPAGILHY_ 0 0 0 REV__SLITRK3|p.S630Y|1|0.45|ENSG00000121871|chr3:165188942-165188942|G/T|missense_variant REV__SLITRK3|p.S630Y|1|0.45|ENSG00000121871|chr3:165188942-165188942|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25408935546875 2 479.753267 957.491981 0.05911 2.8358E-05 -0.021417 -1.0275E-05 0.037693 1.8083E-05 479.7532291007727 97.873 1.288 93.775 93.081 94.369 -4.0978 111 36 4 0 0 0 0.54076 1 19192 19192 18.135 1.1927 1 20584000 + 43890 24656 29136 29156 43232 43232 0.011534983804153853 STPAGILHY 9 Unmodified _STPAGILHY_ 0 0 0 REV__SLITRK3|p.S630Y|1|0.45|ENSG00000121871|chr3:165188942-165188942|G/T|missense_variant REV__SLITRK3|p.S630Y|1|0.45|ENSG00000121871|chr3:165188942-165188942|G/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.753267 957.491981 -0.29056 -0.0001394 0.27505 0.00013196 -0.015505 -7.4387E-06 479.7533668296587 94.151 1.1893 94.151 93.54 94.73 0 0.24487 0.0001369 NaN 23.148 107 33 4 NaN NaN NaN NaN 0 NaN NaN 0 23767000 + 43891 24656 29136 29156 0.011534983804153853 STPAGILHY 9 Unmodified _STPAGILHY_ 0 0 0 REV__SLITRK3|p.S630Y|1|0.45|ENSG00000121871|chr3:165188942-165188942|G/T|missense_variant REV__SLITRK3|p.S630Y|1|0.45|ENSG00000121871|chr3:165188942-165188942|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 479.753267 957.491981 0.19009 9.1197E-05 0.041777 2.0043E-05 0.23187 0.00011124 479.75317593896773 98.129 1.8662 93.86 92.712 94.578 -4.2692 -0.045539 -8.6929E-05 NaN 23.148 134 53 4 NaN NaN NaN NaN 0 NaN NaN 0 18388000 + 43892 24656 29136 29156 0.011534983804153853 STPAGILHY 9 Unmodified _STPAGILHY_ 0 0 0 REV__SLITRK3|p.S630Y|1|0.45|ENSG00000121871|chr3:165188942-165188942|G/T|missense_variant REV__SLITRK3|p.S630Y|1|0.45|ENSG00000121871|chr3:165188942-165188942|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 479.753267 957.491981 0.013525 6.4885E-06 0.24529 0.00011768 0.25882 0.00012417 479.75324259020977 97.757 1.8504 93.837 92.818 94.668 -3.9194 -0.068548 0.00010834 NaN 23.148 89 53 2 NaN NaN NaN NaN 0 NaN NaN 0 20360000 + 43893 24656 29136 29156 0.011534983804153853 STPDKKASQ 9 Unmodified _STPDKKASQ_ 0 0 0 nc|ENSG00000183814|Q5TKA1-3|LIN9;ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9 nc|ENSG00000183814|Q5TKA1-3|LIN9 nc|ENSG00000183814|Q5TKA1-3|LIN9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24969482421875 2 481.251089 960.487624 0.039845 1.9176E-05 -1.0501 -0.00050534 -1.0102 -0.00048616 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 0.54076 1 6970 6970 17.113 0.96379 1 69706000 43894 6873 29137 29157 43233 43233 0.005799891668630153 STPDYYPDY 9 Unmodified _STPDYYPDY_ 0 0 0 REV__COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant;REV__nc|ENSG00000130635|P20908-2|COL5A1 REV__COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2077941894531 3 374.153833 1119.43967 0.10363 3.8775E-05 0.31612 0.00011828 0.41976 0.00015705 374.15389623331714 44.101 0.75299 44.101 43.78 44.533 0 61 21 4 0 0 0 0.66537 1 8250 8250 5.2969 0 1 24575000 + 43895 13492;16020 29138 29158 43234 43234 -0.11527129543856063 STPDYYPDY 9 Unmodified _STPDYYPDY_ 0 0 0 REV__COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant;REV__nc|ENSG00000130635|P20908-2|COL5A1 REV__COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2110290527344 3 374.153833 1119.43967 -0.28658 -0.00010722 0.60134 0.00022499 0.31476 0.00011777 374.1540173036296 47.117 0.79758 44.276 43.972 44.77 -2.8409 66 22 4 0 0 0 0.5326 1 8880 8880 0.073264 0 1 27502000 + 43896 13492;16020 29138 29158 43235 43235 -0.11527129543856063 STPDYYPDY 9 Unmodified _STPDYYPDY_ 0 0 0 REV__COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant;REV__nc|ENSG00000130635|P20908-2|COL5A1 REV__COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20440673828125 3 374.153833 1119.43967 -0.77911 -0.00029151 1.102 0.00041232 0.32289 0.00012081 374.1541961407303 47.125 0.86103 44.175 43.948 44.809 -2.9499 77 24 4 0 0 0 0.66537 1 8617 8617 5.2969 0 1 26451000 + 43897 13492;16020 29138 29158 43236 43236 -0.11527129543856063 STPEGARDF 9 Unmodified _STPEGARDF_ 0 0 0 tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2536315917969 2 490.227613 978.440674 NaN NaN NaN NaN NaN NaN NaN 120.28 1 115.82 115.32 116.32 -4.467 0 0 0 0.23508 1 23160 23160 10.824 0.64053 1 43898 26274 29139 29159 43237 43237 -0.04940870384291429 STPLQHLY 8 Unmodified _STPLQHLY_ 0 0 0 ENST00000489895.5_1_3:52512001-52514911:+|nuORF ENST00000489895.5_1_3:52512001-52514911:+|nuORF ENST00000489895.5_1_3:52512001-52514911:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2423400878906 2 479.753267 957.491981 0.05911 2.8358E-05 -0.021417 -1.0275E-05 0.037693 1.8083E-05 479.7532291007727 97.873 1.288 93.775 93.081 94.369 -4.0978 111 36 4 0 0 0 0.73833 1 19265 19265 11.64 0.81637 1 20584000 43899 10507 29140 29160 43238 43238 0.011534983804153853 STPLSNTPL 9 Unmodified _STPLSNTPL_ 0 0 0 MYOCD|p.S481Pfs*18|2|0.35|ENSG00000141052|chr17:12752724-12752724|C/-|frameshift_variant;MYOCD|p.P457Rfs*42|2|0.26|ENSG00000141052|chr17:12752653-12752653|C/-|frameshift_variant;nc|ENSG00000141052|Q8IZQ8-2|MYOCD;MYOCD|p.Q636Sfs*59|1|0.39|ENSG00000141052|chr17:12753188-12753189|-/C|frameshift_variant;nc|ENSG00000141052|Q8IZQ8|MYOCD;ENSG00000141052|ENST00000425538|MYOCD MYOCD|p.S481Pfs*18|2|0.35|ENSG00000141052|chr17:12752724-12752724|C/-|frameshift_variant MYOCD|p.S481Pfs*18|2|0.35|ENSG00000141052|chr17:12752724-12752724|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25811767578125 2 465.250557 928.486562 0.15128 7.0383E-05 -0.24554 -0.00011424 -0.094264 -4.3856E-05 465.2504925341325 31.323 0.56074 31.323 31.04 31.6 0 22 15 2 0 0 0 0.5059 1 5703 5703 19.257 0 1 851050 43900 4345 29141 29161 43239 43239 0.01945774797957256 STPLTATA 8 Unmodified _STPLTATA_ 0 0 0 REV__ENST00000528056.5_1_Y:7239805-7239886:+|nuORF REV__ENST00000528056.5_1_Y:7239805-7239886:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2070617675781 2 381.205618 760.396684 NaN NaN NaN NaN NaN NaN NaN 19.534 1 18.208 17.708 18.708 -1.3251 0 0 0 0.21486 1 2982 2982 8.5933 2.8329 1 + 43901 22719 29142 29162 43240 43240 0.006901451893895683 STPLTQSMC 9 Unmodified _STPLTQSMC_ 0 0 0 REV__KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant REV__KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.14849853515625 3 323.145627 966.415053 NaN NaN NaN NaN NaN NaN NaN 121.48 1 116.93 116.43 117.43 -4.5476 0 0 0 0.23508 1 23947 23947 1.1933 0 1 + 43902 15633 29143 29163 43241 43241 -0.06949804222563216 STPPTFHEDDD 11 Unmodified _STPPTFHEDDD_ 0 0 0 REV__MMP21|p.S449Kfs*9|1|0.13|ENSG00000154485|chr10:125767596-125767597|-/T|frameshift_variant REV__MMP21|p.S449Kfs*9|1|0.13|ENSG00000154485|chr10:125767596-125767597|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.75634765625 2 630.754389 1259.49423 NaN NaN NaN NaN NaN NaN NaN 138.68 1 138.68 138.18 139.18 0 0 0 0 0.22632 1 27545 27545 0.0059557 0 1 + 43903 17183 29144 29164 43242 43242 -0.1251416246309418 STPPTFHEDDD 11 Unmodified _STPPTFHEDDD_ 0 0 0 REV__MMP21|p.S449Kfs*9|1|0.13|ENSG00000154485|chr10:125767596-125767597|-/T|frameshift_variant REV__MMP21|p.S449Kfs*9|1|0.13|ENSG00000154485|chr10:125767596-125767597|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7530517578125 2 630.754389 1259.49423 NaN NaN NaN NaN NaN NaN NaN 142.97 1 138.31 137.81 138.81 -4.656 0 0 0 0.23379 1 28265 28265 5.2969 2.0156 1 + 43904 17183 29144 29164 43243 43243 -0.1251416246309418 STPPTFHEDDD 11 Unmodified _STPPTFHEDDD_ 0 0 0 REV__MMP21|p.S449Kfs*9|1|0.13|ENSG00000154485|chr10:125767596-125767597|-/T|frameshift_variant REV__MMP21|p.S449Kfs*9|1|0.13|ENSG00000154485|chr10:125767596-125767597|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7548828125 2 630.754389 1259.49423 NaN NaN NaN NaN NaN NaN NaN 142.85 1 137.82 137.32 138.32 -5.0261 0 0 0 0.22632 1 27540 27540 0.0059557 0.0025752 1 + 43905 17183 29144 29164 43244 43244 -0.1251416246309418 STPQISSLQ 9 Unmodified _STPQISSLQ_ 0 0 0 REV__ENST00000439581.1_1_X:108872572-108872794:-|nuORF REV__ENST00000439581.1_1_X:108872572-108872794:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2549133300781 2 480.753464 959.492375 0.18943 9.107E-05 0.050473 2.4265E-05 0.2399 0.00011533 480.7533866743533 41.966 0.49384 41.966 41.689 42.183 0 19 13 2 0 0 0 0.39189 1 7829 7829 26.268 3.5319 1 1774300 + 43906 21696 29145 29165 43245 43245 0.011008733096218748 STPQISSLQ 9 Unmodified _STPQISSLQ_ 0 0 0 REV__ENST00000439581.1_1_X:108872572-108872794:-|nuORF REV__ENST00000439581.1_1_X:108872572-108872794:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25457763671875 2 480.753464 959.492375 -0.14524 -6.9823E-05 0.19949 9.5905E-05 0.054251 2.6081E-05 480.75356676950435 44.682 0.56671 41.935 41.533 42.1 -2.7475 22 15 2 0 0 0 0.42844 1 8062 8062 24.021 0 1 2373500 + 43907 21696 29145 29165 43246 43246 0.011008733096218748 STPQRHPP 8 Unmodified _STPQRHPP_ 0 0 0 ENST00000489671.5_2_3:141668120-141668426:-|nuORF ENST00000489671.5_2_3:141668120-141668426:-|nuORF ENST00000489671.5_2_3:141668120-141668426:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.241455078125 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 19.519 1 19.519 19.019 20.019 0 0 0 0 0.21486 1 3194 3194 5.7604 0 1 43908 10502 29146 29166 43247 43247 0.004668632977086418 STPRSAAAAP 10 Unmodified _STPRSAAAAP_ 0 0 0 ENST00000388741.6_1_8:72246408-72274070:-|nuORF ENST00000388741.6_1_8:72246408-72274070:-|nuORF ENST00000388741.6_1_8:72246408-72274070:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2389221191406 2 464.745973 927.477394 0.91648 0.00042593 -1.4843 -0.00068982 -0.56781 -0.00026389 464.7452584650176 24.385 0.69278 22.737 22.507 23.199 -1.6482 22 19 2 0 0 0 0.85223 1 4307 4307 13.042 0 1 365590 43909 9348 29147 29167 43248 43248 0.010754262322620889 STPRYSSY 8 Unmodified _STPRYSSY_ 0 0 0 REV__ENSG00000188694|ENST00000340345|KRTAP24-1 REV__ENSG00000188694|ENST00000340345|KRTAP24-1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24957275390625 2 480.724707 959.43486 0.036633 1.761E-05 0.31466 0.00015127 0.3513 0.00016888 480.7249097879319 36.759 0.84515 36.759 36.248 37.093 0 57 23 4 0 0 0 0.38287 1 6721 6721 46.021 11.919 1 7102200 + 43910 19164 29148 29168 43249 43249 -0.0464796889596073 STPSDCPPEL 10 Unmodified _STPSDCPPEL_ 0 0 0 ENSG00000205927|ENST00000382357|OLIG2 ENSG00000205927|ENST00000382357|OLIG2 ENSG00000205927|ENST00000382357|OLIG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6900024414062 2 523.228965 1044.44338 0.53894 0.00028199 -0.55468 -0.00029022 -0.015741 -8.2362E-06 523.2286582997817 31.764 3.5593 29.616 27.792 31.351 -2.1483 236 101 4 0 0 0 0.61964 1 5742 5742 18.146 3.3081 1 8858300 43911 7661 29149 29169 43250 43250 -0.07706783041658127 STPSLPASAE 10 Unmodified _STPSLPASAE_ 0 0 0 SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2516784667969 2 480.237647 958.460741 -0.030259 -1.4532E-05 0.23096 0.00011092 0.2007 9.6386E-05 480.23770063007976 44.074 0.80135 41.284 40.876 41.677 -2.79 50 22 3 0 0 0 0.42569 1 8246 8246 29.082 0.59474 1 13477000 43912 25686 29150 29170 43251 43251 -0.02015119444342872 STPVHEQY 8 Unmodified _STPVHEQY_ 0 0 0 REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23687744140625 2 480.724707 959.43486 0.036633 1.761E-05 0.31466 0.00015127 0.3513 0.00016888 480.7249097879319 36.759 0.84515 36.759 36.248 37.093 0 57 23 4 0 0 0 0.36038 1 6705 6705 34.102 3.4659 1 7102200 + 43913 17748 29151 29171 43252 43252 -0.0464796889596073 STPVTDRGP 9 Unmodified _STPVTDRGP_ 0 0 0 ENSG00000119403|ENST00000373896|PHF19;ENST00000487555.5_1_9:123623373-123629236:-|nuORF ENSG00000119403|ENST00000373896|PHF19 ENSG00000119403|ENST00000373896|PHF19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24017333984375 2 465.237981 928.461409 0.012042 5.6023E-06 1.4334 0.00066686 1.4454 0.00067246 465.23885899129203 32.95 0.9733 30.719 30.331 31.304 -2.2305 33 27 2 0 0 0 0.40602 1 6121 6121 25.399 3.6527 1 638140 43914 3076 29152 29172 43253 43253 -0.005682800046088232 STQGRRGTG 9 Unmodified _STQGRRGTG_ 0 0 0 ENST00000584063.5_1_17:46052038-46052245:+|nuORF ENST00000584063.5_1_17:46052038-46052245:+|nuORF ENST00000584063.5_1_17:46052038-46052245:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2379150390625 2 460.238847 918.463141 NaN NaN NaN NaN NaN NaN NaN 51.553 1 48.671 48.171 49.171 -2.8824 0 0 0 0.23277 1 9796 9796 13.906 0.39817 1 43915 11521 29153 29173 43254 43254 0.0006477380399019239 STQKKLDH 8 Unmodified _STQKKLDH_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2;FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant;FAT2|p.V3716Ffs*44|1|0.22|ENSG00000086570|chr5:151521447-151521447|C/-|frameshift_variant;FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant;FAT2|p.P2377Qfs*41|1|0.34|ENSG00000086570|chr5:151543997-151543997|G/-|frameshift_variant ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7230529785156 2 478.761623 955.508694 -0.044775 -2.1437E-05 1.1917 0.00057054 1.1469 0.00054911 478.76228615821196 54.076 0.17355 50.938 50.816 50.99 -3.1377 6 4 2 0 0 0 0.72565 1 9973 9973 26.884 14.352 1 1933000 43916 1696 29154 29174 43255 43255 0.029159992663721823 STQKQVLNY 9 Unmodified _STQKQVLNY_ 0 0 0 POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant;POLR1B|p.F613Lfs*14|1|0.08|ENSG00000125630|chr2:112568055-112568055|T/-|frameshift_variant;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2606811523438 2 540.787838 1079.56112 0.65249 0.00035286 -0.78459 -0.0004243 -0.1321 -7.1437E-05 540.7873399605729 47.381 0.48895 47.381 47.123 47.612 0 20 13 2 0 0 0 0.35202 1 8936 8936 45.7 29.551 1 1870100 43917 3369 29155 29175 43256 43256 0.024525376093151863 STQKQVLNY 9 Unmodified _STQKQVLNY_ 0 0 0 POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant;POLR1B|p.F613Lfs*14|1|0.08|ENSG00000125630|chr2:112568055-112568055|T/-|frameshift_variant;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2606811523438 2 540.787838 1079.56112 0.071106 3.8453E-05 0.0005918 3.2004E-07 0.071698 3.8773E-05 541.2891595070599 50.225 0.56396 47.344 47.045 47.609 -2.8811 30 15 3 0 0 0 0.66788 1 9567 9567 17.113 5.6182 1 2672700 43918 3369 29155 29175 43257 43257 0.024525376093151863 STQKQVLNY 9 Unmodified _STQKQVLNY_ 0 0 0 POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant;POLR1B|p.F613Lfs*14|1|0.08|ENSG00000125630|chr2:112568055-112568055|T/-|frameshift_variant;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2792358398438 2 540.787838 1079.56112 0.11839 6.4024E-05 -0.092905 -5.0242E-05 0.025485 1.3782E-05 540.7877145499057 50.353 0.54085 47.308 47.057 47.598 -3.0453 31 15 3 0 0 0 0.44932 1 9259 9259 22.736 6.5872 1 2949200 43919 3369 29155 29175 43258 43258 0.024525376093151863 STQKQVLNY 9 Unmodified _STQKQVLNY_ 0 0 0 POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant;POLR1B|p.F613Lfs*14|1|0.08|ENSG00000125630|chr2:112568055-112568055|T/-|frameshift_variant;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2605590820312 2 540.787838 1079.56112 0.012627 6.8286E-06 -0.15299 -8.2736E-05 -0.14037 -7.5908E-05 540.7877411695096 50.251 0.50809 47.244 47.042 47.551 -3.0068 31 14 3 0 0 0 0.45788 1 9277 9277 15.248 0 1 1821900 43920 3369 29155 29175 43259 43259 0.024525376093151863 STQNHKQN 8 Unmodified _STQNHKQN_ 0 0 0 ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451 ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7296142578125 2 478.730855 955.447156 NaN NaN NaN NaN NaN NaN NaN 108.46 1 104.14 103.64 104.64 -4.32 0 0 0 0.21039 1 21371 21371 16.942 0 1 43921 2673 29156 29176 43260 43260 -0.032349324329061346 STQNHKQN 8 Unmodified _STQNHKQN_ 0 0 0 ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451 ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7292785644531 2 478.730855 955.447156 NaN NaN NaN NaN NaN NaN NaN 108.7 1 104.36 103.86 104.86 -4.3428 0 0 0 0.21039 1 21420 21420 16.942 2.104 1 43922 2673 29156 29176 43261 43261 -0.032349324329061346 STQSHQPP 8 Unmodified _STQSHQPP_ 0 0 0 REV__ENST00000315150.9_1_3:128809278-128809476:-|nuORF REV__ENST00000315150.9_1_3:128809278-128809476:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 441.06903076171875 2 441.209224 880.403895 NaN NaN NaN NaN NaN NaN NaN 21.006 1 19.531 19.031 20.031 -1.4742 0 0 0 0.21486 1 3534 3534 5.7604 0 1 + 43923 20516 29157 29177 43262 43262 -0.04109122210195437 STRAGFKAQE 10 Unmodified _STRAGFKAQE_ 0 0 0 REV__ENST00000307826.4_1_5:180220053-180229749:-|nuORF REV__ENST00000307826.4_1_5:180220053-180229749:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7827758789062 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 58.686 1 55.776 55.276 56.276 -2.9105 0 0 0 2.8426 1 11274 11274 0.063865 0 1 + 43924 20455 29158 29178 43263 43263 0.008587693238041538 STRDPEQP 8 Unmodified _STRDPEQP_ 0 0 0 REV__ENSG00000131503|ENST00000360839|ANKHD1 REV__ENSG00000131503|ENST00000360839|ANKHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24169921875 2 465.219788 928.425024 1.0602 0.00049321 0.47699 0.00022191 1.5372 0.00071511 465.2207080040469 26.198 0.16872 24.415 24.349 24.517 -1.7821 7 4 2 0 0 0 0.97173 1 4623 4623 18.135 6.4947 1 158130 + 43925 16080 29159 29179 43264 43264 -0.0420515690133243 STRGGRWGY 9 Unmodified _STRGGRWGY_ 0 0 0 REV__ENST00000602227.1_1_19:7598291-7598678:+|nuORF REV__ENST00000602227.1_1_19:7598291-7598678:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2609252929688 2 520.25704 1038.49953 -0.61283 -0.00031883 -0.71096 -0.00036988 -1.3238 -0.00068871 520.2566661878933 25.369 0.6883 23.835 23.609 24.297 -1.5342 76 19 5 0 0 0 0.52414 2 4161 4142;4161 18.135 0 1 77504000 + 43926 23422 29160 29180 43265;43266 43266 -0.018183492992875472 STRGVDSPP 9 Unmodified _STRGVDSPP_ 0 0 0 ENST00000539405.1_1_13:111303270-111319801:-|nuORF ENST00000539405.1_1_13:111303270-111319801:-|nuORF ENST00000539405.1_1_13:111303270-111319801:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2301025390625 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 22.676 1 21.222 20.722 21.722 -1.4535 0 0 0 0.23508 1 3624 3624 11.64 0 1 43927 11055 29161 29181 43267 43267 -0.014885665216752386 STRKHYRP 8 Unmodified _STRKHYRP_ 0 0 0 REV__nc|ENSG00000149503|Q9NQS7-2|INCENP REV__nc|ENSG00000149503|Q9NQS7-2|INCENP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2630004882812 2 522.788507 1043.56246 0.067656 3.537E-05 -1.7276 -0.00090318 -1.66 -0.00086781 522.7876159754948 31.777 0.70424 29.547 29.129 29.833 -2.2305 26 19 2 0 0 0 1.0066 1 5704 5704 11.64 0.81637 1 653160 + 43928 17010 29162 29182 43268 43268 0.042422164887511826 STRLPSRI 8 Unmodified _STRLPSRI_ 0 0 0 REV__JPH3|p.L354Cfs*117|1|0.57|ENSG00000154118|chr16:87644931-87644931|C/-|frameshift_variant;REV__ENSG00000104369|ENST00000342232|JPH1 REV__ENSG00000104369|ENST00000342232|JPH1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2416687011719 2 465.279983 928.545414 NaN NaN NaN NaN NaN NaN NaN 68.229 1 64.692 64.192 65.192 -3.5362 0 0 0 0.21486 1 12817 12817 11.64 1.4569 1 + 43929 23692;14919 29163 29183 43269 43269 0.07828295882939074 STRNETPKT 9 Unmodified _STRNETPKT_ 0 0 0 tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1 tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1 tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.2174377441406 3 345.180605 1032.51999 NaN NaN NaN NaN NaN NaN NaN 64.131 1 64.131 63.631 64.631 0 0 0 0 0.23508 1 12344 12344 4.5289 1.2476 1 43930 26454 29164 29184 43270 43270 0.005027765698514486 STRNKEKV 8 Unmodified _STRNKEKV_ 0 0 0 REV__ENSG00000168229|ENST00000306051|PTGDR REV__ENSG00000168229|ENST00000306051|PTGDR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2537841796875 2 481.274898 960.535243 NaN NaN NaN NaN NaN NaN NaN 83.512 1 83.512 83.012 84.012 0 0 0 0 0.21486 1 16284 16284 12.532 0 1 + 43931 18008 29165 29185 43271 43271 0.05339688157710043 STRNPSLMK 9 Unmodified _STRNPSLMK_ 0 0 0 nc|ENSG00000133816|O94851|MICAL2;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF nc|ENSG00000133816|O94851|MICAL2 nc|ENSG00000133816|O94851|MICAL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.2307434082031 3 345.186814 1032.53861 NaN NaN NaN NaN NaN NaN NaN 38.645 1 36.096 35.596 36.596 -2.5491 0 0 0 0.23508 1 7169 7169 2.2828 0.95324 1 43932 12332 29166 29186 43272 43272 0.02364614940051979 STRPGQKSP 9 Unmodified _STRPGQKSP_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7313232421875 2 479.259248 956.503943 1.1954 0.00057289 -3.296 -0.0015796 -2.1006 -0.0010067 479.2573636843866 25.639 0.31315 23.991 23.722 24.035 -1.6482 11 8 2 0 0 0 0.74655 1 4502 4502 3.5965 0 1 639680 43933 4201 29167 29187 43273 43273 0.023951151236246915 STRPLPPPP 9 Unmodified _STRPLPPPP_ 0 0 0 REV__ENST00000228918.8_1_12:6493298-6493809:+|nuORF REV__ENST00000228918.8_1_12:6493298-6493809:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25360107421875 2 481.276909 960.539266 -0.24277 -0.00011684 0.50743 0.00024421 0.26466 0.00012737 481.277128205733 57.277 1.9408 57.277 56.536 58.477 0 96 55 2 0 0 0 0.64382 1 10807 10807 10.074 2.1638 1 1919100 + 43934 20057 29168 29188 43274 43274 0.05741777651417124 STRPSDLGP 9 Unmodified _STRPSDLGP_ 0 0 0 REV__ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant REV__ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.23651123046875 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 28.358 1 28.358 27.858 28.858 0 0 0 0 0.20155 1 5033 5033 23.148 2.6948 1 + 43935 13108 29169 29189 43275 43275 -0.005682800046088232 STRPSDLGP 9 Unmodified _STRPSDLGP_ 0 0 0 REV__ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant REV__ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2369384765625 2 465.237981 928.461409 0.46314 0.00021547 -0.72578 -0.00033766 -0.26264 -0.00012219 465.2376239059564 30.078 0.24105 27.961 27.843 28.084 -2.1167 10 6 2 0 0 0 0.25702 1 5417 5417 34.102 7.2188 1 415520 + 43936 13108 29169 29189 43276 43276 -0.005682800046088232 STRPSGVEP 9 Unmodified _STRPSGVEP_ 0 0 0 REV__nc|ENSG00000174516|Q8N2H9-4|PELI3 REV__nc|ENSG00000174516|Q8N2H9-4|PELI3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23956298828125 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 29.628 1 27.512 27.012 28.012 -2.1167 0 0 0 0.20155 1 5330 5330 23.148 0 1 + 43937 18417 29170 29190 43277 43277 -0.005682800046088232 STRSLARRP 9 Unmodified _STRSLARRP_ 0 0 0 REV__ENSG00000170085|ENST00000429602|SIMC1 REV__ENSG00000170085|ENST00000429602|SIMC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.256591796875 2 522.307064 1042.59957 0.40132 0.00020961 -3.0227 -0.0015788 -2.6214 -0.0013692 522.3046688587817 70.769 0.1796 67.302 67.235 67.414 -3.467 5 4 2 0 0 0 0.87634 1 13421 13421 3.5965 0 1 524700 + 43938 18140 29171 29191 43278 43278 0.07997888034515199 STRVEYITP 9 Unmodified _STRVEYITP_ 0 0 0 nc|ENSG00000137491|O94956-4|SLCO2B1;nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1;nc|ENSG00000137491|O94956-2|SLCO2B1;ENST00000528108.1_1_11:74907538-74911433:+|nuORF;ENST00000531756.5_1_11:74862426-74914042:+|nuORF nc|ENSG00000137491|O94956-4|SLCO2B1 nc|ENSG00000137491|O94956-4|SLCO2B1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2784423828125 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 54.028 1 54.028 53.528 54.528 0 0 0 0 0.19721 1 10298 10298 24.021 7.8715 1 43939 4087 29172 29192 43279 43279 0.02053135235018999 STRVEYITP 9 Unmodified _STRVEYITP_ 0 0 0 nc|ENSG00000137491|O94956-4|SLCO2B1;nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1;nc|ENSG00000137491|O94956-2|SLCO2B1;ENST00000528108.1_1_11:74907538-74911433:+|nuORF;ENST00000531756.5_1_11:74862426-74914042:+|nuORF nc|ENSG00000137491|O94956-4|SLCO2B1 nc|ENSG00000137491|O94956-4|SLCO2B1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2838745117188 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 54.112 1 54.112 53.612 54.612 0 0 0 0 0.21844 1 10316 10316 18.146 1.2041 1 43940 4087 29172 29192 43280 43280 0.02053135235018999 STRVLAFLTA 10 Unmodified _STRVLAFLTA_ 0 0 0 REV__nc|ENSG00000102001|O60840-5|CACNA1F REV__nc|ENSG00000102001|O60840-5|CACNA1F MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2130432128906 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 16.925 1 16.925 16.425 17.425 0 0 0 0 0.22588 1 2654 2654 1.7423 0.089654 1 + 43941 14814 29173 29193 43281 43281 0.0825400488570267 STRVYNDRI 9 Unmodified _STRVYNDRI_ 0 0 0 REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant REV__SCAPER|p.E946Rfs*19|1|0.15|ENSG00000140386|chr15:76574160-76574161|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2181701660156 3 375.2 1122.57817 0.0086351 3.2399E-06 0.0077592 2.9112E-06 0.016394 6.1511E-06 375.19986900304673 47.687 0.73195 44.745 44.342 45.074 -2.9421 42 20 3 0 0 0 0.59228 1 8750 8750 13.615 2.1202 1 5739000 + 43942 16571 29174 29194 43282 43282 0.02178458215144019 STRWFHTRRHW 11 Unmodified _STRWFHTRRHW_ 0 0 0 REV__ENST00000322893.11_1_14:63483627-63512140:-|nuORF REV__ENST00000322893.11_1_14:63483627-63512140:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3976440429688 2 785.40035 1568.78615 NaN NaN NaN NaN NaN NaN NaN 126.05 1 126.05 125.55 126.55 0 0 0 0 0.22632 1 24872 24872 0.172 0.14579 1 + 43943 20562 29175 29195 43283 43283 0.024505049228537246 STRWFHTRRHW 11 Unmodified _STRWFHTRRHW_ 0 0 0 REV__ENST00000322893.11_1_14:63483627-63512140:-|nuORF REV__ENST00000322893.11_1_14:63483627-63512140:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.39892578125 2 785.40035 1568.78615 NaN NaN NaN NaN NaN NaN NaN 129.19 1 124.45 123.95 124.95 -4.7408 0 0 0 0.22632 1 24862 24862 0.026206 0 1 + 43944 20562 29175 29195 43284 43284 0.024505049228537246 STSGSGSH 8 Unmodified _STSGSGSH_ 0 0 0 REV__ENSG00000169071|ENST00000375708|ROR2 REV__ENSG00000169071|ENST00000375708|ROR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 15.287 1 13.934 13.434 14.434 -1.3534 0 0 0 0.21486 1 2095 2095 0.69038 0 1 + 43945 18075 29176 29196 43285 43285 -0.08221646061053889 STSHIKLDW 9 Unmodified _STSHIKLDW_ 0 0 0 REV__ENST00000529112.5_3_11:57193529-57194064:-|nuORF REV__ENST00000529112.5_3_11:57193529-57194064:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7811889648438 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 59.588 1 56.655 56.155 57.155 -2.9333 0 0 0 0.23508 1 11459 11459 11.64 0.81637 1 + 43946 21258 29177 29197 43286 43286 0.011205549548776617 STSLQLRIPI 10 Unmodified _STSLQLRIPI_ 0 0 0 REV__ENST00000465368.5_1_3:100064708-100064834:+|nuORF REV__ENST00000465368.5_1_3:100064708-100064834:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.8121337890625 3 376.564279 1126.67101 -0.28921 -0.0001089 0.055289 2.082E-05 -0.23392 -8.8084E-05 376.56423935700565 86.439 0.8514 82.712 82.369 83.22 -3.727 41 16 3 0 0 0 1.1318 1 16965 16965 0.13989 0.12663 1 9882000 + 43947 21948 29178 29198 43287 43287 0.11273962948507688 STSLQLRIPI 10 Unmodified _STSLQLRIPI_ 0 0 0 REV__ENST00000465368.5_1_3:100064708-100064834:+|nuORF REV__ENST00000465368.5_1_3:100064708-100064834:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 376.564279 1126.67101 0.03111 1.1715E-05 -0.25781 -9.7081E-05 -0.2267 -8.5366E-05 376.5641338610751 83.072 0.7021 83.072 82.806 83.508 0 0.26099 -7.5736E-05 NaN 0.13989 47 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7112200 + 43948 21948 29178 29198 0.11273962948507688 STSLQLRIPI 10 Unmodified _STSLQLRIPI_ 0 0 0 REV__ENST00000465368.5_1_3:100064708-100064834:+|nuORF REV__ENST00000465368.5_1_3:100064708-100064834:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 376.564279 1126.67101 0.27973 0.00010534 -0.71501 -0.00026925 -0.43528 -0.00016391 376.56400544730786 86.674 0.66384 82.723 82.366 83.03 -3.9503 -0.087668 -0.00059223 NaN 0.13989 46 18 3 NaN NaN NaN NaN 0 NaN NaN 0 8627400 + 43949 21948 29178 29198 0.11273962948507688 STSLQLRIPI 10 Unmodified _STSLQLRIPI_ 0 0 0 REV__ENST00000465368.5_1_3:100064708-100064834:+|nuORF REV__ENST00000465368.5_1_3:100064708-100064834:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 376.564279 1126.67101 -0.5945 -0.00022387 0.22292 8.3945E-05 -0.37157 -0.00013992 376.5643357161098 86.465 1.0593 82.737 82.413 83.472 -3.7289 -0.074391 0.00046734 NaN 0.13989 53 19 4 NaN NaN NaN NaN 0 NaN NaN 0 9940400 + 43950 21948 29178 29198 0.11273962948507688 STSPYTNW 8 Unmodified _STSPYTNW_ 0 0 0 REV__ENSG00000214160|ENST00000397676|ALG3 REV__ENSG00000214160|ENST00000397676|ALG3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.1422119140625 3 319.14338 954.408311 NaN NaN NaN NaN NaN NaN NaN 102.53 1 102.53 102.03 103.03 0 0 0 0 0.21486 1 20138 20138 1.6526 0 1 + 43951 19662 29179 29199 43288 43288 -0.07071657787298591 STSSLSLGPA 10 Unmodified _STSSLSLGPA_ 0 0 0 REV__nc|ENSG00000171992|Q8N3V7|SYNPO REV__nc|ENSG00000171992|Q8N3V7|SYNPO MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2389831542969 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 33.46 1 31.314 30.814 31.814 -2.1468 0 0 0 2.8426 1 5837 5837 0.26539 0 1 + 43952 24170 29180 29200 43289 43289 0.0033318441828669165 STSYNLCK 8 Unmodified _STSYNLCK_ 0 0 0 REV__MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant REV__MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2383728027344 2 458.21566 914.416767 NaN NaN NaN NaN NaN NaN NaN 59.414 1 56.101 55.601 56.601 -3.3139 0 0 0 0.21486 1 11048 11048 11.64 0 1 + 43953 23878 29181 29201 43290 43290 -0.04386427142321736 STSYPHEGT 9 Unmodified _STSYPHEGT_ 0 0 0 ENST00000257897.7_2_12:58119581-58120334:-|nuORF ENST00000257897.7_2_12:58119581-58120334:-|nuORF ENST00000257897.7_2_12:58119581-58120334:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2729187011719 2 489.711796 977.40904 0.24861 0.00012175 0.57579 0.00028197 0.8244 0.00040372 489.71230241167046 26.708 0.58043 26.708 26.327 26.907 0 21 16 2 0 0 0 0.80521 1 4702 4702 10.824 0.75 1 497720 43954 8268 29182 29202 43291 43291 -0.08056863138244807 STSYRQLG 8 Unmodified _STSYRQLG_ 0 0 0 REV__ENST00000465065.5_1_3:180322667-180322859:+|nuORF REV__ENST00000465065.5_1_3:180322667-180322859:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 456.7320556640625 2 456.232699 910.450845 0.20029 9.1377E-05 -0.17947 -8.1882E-05 0.020811 9.4948E-06 456.2325799799997 27.766 1.2286 25.77 25.255 26.484 -1.9962 70 34 4 0 0 0 0.88303 1 4588 4588 2.643 0 1 65997000 + 43955 21945 29183 29203 43292 43292 -0.007962626590483524 STTAASLFAS 10 Unmodified _STTAASLFAS_ 0 0 0 REV__EGR2|p.S277Vfs*4|1|0.09|ENSG00000122877|chr10:62813810-62813810|G/-|frameshift_variant REV__EGR2|p.S277Vfs*4|1|0.09|ENSG00000122877|chr10:62813810-62813810|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2454528808594 2 478.24019 954.465826 0.74927 0.00035833 -0.98535 -0.00047123 -0.23608 -0.0001129 478.23973074039884 28.678 0.65169 26.722 26.468 27.12 -1.9561 67 18 7 0 0 0 0.69026 1 5145 5145 13.906 0.39817 1 5845800 + 43956 13791 29184 29204 43293 43293 -0.013228155817046172 STTDDQVPSTY 11 Unmodified _STTDDQVPSTY_ 0 0 0 REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.2994079589844 3 405.178819 1212.51463 0.21055 8.531E-05 -0.6569 -0.00026616 -0.44635 -0.00018085 405.1786733146984 27.749 0.52509 25.994 25.65 26.175 -1.7552 22 14 2 0 0 0 0.81736 1 4637 4637 1.3296 0 1 637220 + 43957 12882 29185 29205 43294 43294 -0.08312991803268233 STTQLHTE 8 Unmodified _STTQLHTE_ 0 0 0 REV__nc|nan|Q7Z6I8-2|C5orf24 REV__nc|nan|Q7Z6I8-2|C5orf24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24127197265625 2 458.722164 915.429775 0.22688 0.00010407 -0.0040056 -1.8375E-06 0.22287 0.00010224 458.7221357660463 28.388 1.5798 26.633 26.175 27.755 -1.7552 81 44 2 0 0 0 0.64512 1 4948 4948 19.257 3.1079 1 7307100 + 43958 18745 29186 29206 43295 43295 -0.03132272758568888 STTVRFIR 8 Unmodified _STTVRFIR_ 0 0 0 REV__ENSG00000171219|ENST00000342711|CDC42BPG REV__ENSG00000171219|ENST00000342711|CDC42BPG MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2657775878906 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 95.346 1 91.155 90.655 91.655 -4.1911 0 0 0 0.23107 1 18197 18197 1.7423 1.6783 1 + 43959 18211 29187 29207 43296 43296 0.07092582399991443 STTYHHLLPAC 11 Unmodified _STTYHHLLPAC_ 0 0 0 REV__GPR52|p.S332Rfs*10|1|0.36|ENSG00000203737|chr1:174449102-174449105|CTGT/-|frameshift_variant REV__GPR52|p.S332Rfs*10|1|0.36|ENSG00000203737|chr1:174449102-174449105|CTGT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2541809082031 3 414.869374 1241.58629 -0.46695 -0.00019372 -0.28349 -0.00011761 -0.75043 -0.00031133 414.8691137808714 17.434 0.31007 16.161 16.041 16.351 -1.2722 10 8 2 0 0 0 0.81621 1 2570 2570 0.50596 0.23694 1 285620 + 43960 19497 29188 29208 43297 43297 -0.024837308597398078 STTYHHLLPAC 11 Unmodified _STTYHHLLPAC_ 0 0 0 REV__GPR52|p.S332Rfs*10|1|0.36|ENSG00000203737|chr1:174449102-174449105|CTGT/-|frameshift_variant REV__GPR52|p.S332Rfs*10|1|0.36|ENSG00000203737|chr1:174449102-174449105|CTGT/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 414.869374 1241.58629 -0.39287 -0.00016299 -0.48401 -0.0002008 -0.87688 -0.00036379 415.2033796929446 17.457 0.24383 16.146 15.995 16.239 -1.3109 -0.0076321 -0.00015525 NaN 0.50596 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 167330 + 43961 19497 29188 29208 -0.024837308597398078 STTYHHLLPAC 11 Unmodified _STTYHHLLPAC_ 0 0 0 REV__GPR52|p.S332Rfs*10|1|0.36|ENSG00000203737|chr1:174449102-174449105|CTGT/-|frameshift_variant REV__GPR52|p.S332Rfs*10|1|0.36|ENSG00000203737|chr1:174449102-174449105|CTGT/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 414.869374 1241.58629 -0.46695 -0.00019372 -0.28349 -0.00011761 -0.75043 -0.00031133 414.8691137808714 17.434 0.31007 16.161 16.041 16.351 -1.2722 0.0076321 9.432E-05 NaN 0.50596 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 285620 + 43962 19497 29188 29208 -0.024837308597398078 STVDIGAPAE 10 Unmodified _STVDIGAPAE_ 0 0 0 ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000136531|Q99250-2|SCN2A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF ENSG00000136531|ENST00000375437|SCN2A ENSG00000136531|ENST00000375437|SCN2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25372314453125 2 480.237647 958.460741 -0.019667 -9.4446E-06 0.2131 0.00010234 0.19343 9.2894E-05 480.23774840718045 44.13 0.97803 41.364 40.722 41.7 -2.7661 74 27 5 0 0 0 0.53552 1 7933 7933 22.736 2.2827 1 8695400 43963 4017 29189 29209 43298 43298 -0.020151194443315035 STVDPKLN 8 Unmodified _STVDPKLN_ 0 0 0 SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant;nc|ENSG00000116754|Q05519-2|SRSF11;ENSG00000116754|ENST00000370949|SRSF11 SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant;nc|ENSG00000116754|Q05519-2|SRSF11 nc|ENSG00000116754|Q05519-2|SRSF11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2294921875 2 437.23745 872.460347 0.78218 0.000342 -1.3624 -0.00059568 -0.58019 -0.00025368 437.2368282613484 24.048 0.2823 22.495 22.319 22.602 -1.5532 12 7 2 0 0 0 8448 1 4190 4190 1.7423 0 1 674700 43964 2952;25790 29190 29210 43299 43299 0.019015056264606756 STVEESNKFY 10 Unmodified _STVEESNKFY_ 0 0 0 MUT|p.M182Nfs*29|1|0.34|ENSG00000146085|chr6:49457899-49457900|-/T|frameshift_variant;ENSG00000146085|ENST00000274813|MMUT MUT|p.M182Nfs*29|1|0.34|ENSG00000146085|chr6:49457899-49457900|-/T|frameshift_variant MUT|p.M182Nfs*29|1|0.34|ENSG00000146085|chr6:49457899-49457900|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2796020507812 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 57.764 1 54.558 54.058 55.058 -3.2052 0 0 0 0.22588 1 10766 10766 7.2892 0 1 43965 4638 29191 29211 43300 43300 -0.047637936983846885 STVFPYSHK 9 Unmodified _STVFPYSHK_ 0 0 0 REV__NXPE1|p.F408S|1|0.28|ENSG00000095110|chr11:114522389-114522389|A/G|missense_variant REV__NXPE1|p.F408S|1|0.28|ENSG00000095110|chr11:114522389-114522389|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.271484375 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 18.408 1 16.893 16.393 17.393 -1.5148 0 0 0 0.23508 1 2726 2726 3.5965 0.31518 1 + 43966 24393 29192 29212 43301 43301 -0.0005883007381726202 STVHVDSAGAT 11 Unmodified _STVHVDSAGAT_ 0 0 0 REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2728271484375 2 522.751453 1043.48835 0.53367 0.00027898 -0.56575 -0.00029575 -0.032086 -1.6773E-05 522.75115426909 31.728 0.34982 29.579 29.409 29.759 -2.1483 16 9 2 0 0 0 0.89764 1 5478 5478 12.241 0 1 1441900 + 43967 12998 29193 29213 43302 43302 -0.03165216184106612 STVHYFIPD 9 Unmodified _STVHYFIPD_ 0 0 0 tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1 tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1 tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2664794921875 2 539.763832 1077.51311 0.25543 0.00013787 -0.34308 -0.00018518 -0.087646 -4.7308E-05 539.7637711768191 20.946 0.58839 20.946 20.742 21.33 0 34 16 4 0 0 0 0.62314 1 3481 3481 7.2892 0 1 3179900 43968 26365 29194 29214 43303 43303 -0.022545363107155936 STVKPVIY 8 Unmodified _STVKPVIY_ 0 0 0 REV__tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1 REV__tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7664794921875 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 38.003 1 38.003 37.503 38.503 0 0 0 0 0.21486 1 7038 7038 8.5933 0.68312 1 + 43969 24950 29195 29215 43304 43304 0.0656785704561571 STVKTHIS 8 Unmodified _STVKTHIS_ 0 0 0 nc|ENSG00000167766|P51522-2|ZNF83;ENSG00000167766|ENST00000597597|ZNF83 nc|ENSG00000167766|P51522-2|ZNF83 nc|ENSG00000167766|P51522-2|ZNF83 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2275085449219 2 436.745442 871.476331 0.036929 1.6129E-05 -0.36688 -0.00016023 -0.32995 -0.00014411 436.745391990288 57.745 0.64634 54.494 54.246 54.892 -3.2517 22 17 2 0 0 0 0.9455 1 10749 10749 16.942 0 1 830060 43970 5846 29196 29216 43305 43305 0.03545211863388431 STVLATAG 8 Unmodified _STVLATAG_ 0 0 0 nc|ENSG00000104415|O95388-3|CCN4 nc|ENSG00000104415|O95388-3|CCN4 nc|ENSG00000104415|O95388-3|CCN4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2020568847656 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 71.571 1 71.571 71.071 72.071 0 0 0 0 0.21452 1 13867 13867 13.508 4.1604 1 43971 12266 29197 29217 43306 43306 0.015661625349594033 STVLRIERC 9 Unmodified _STVLRIERC_ 0 0 0 nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant;PIEZO2|p.Y2489Sfs*7|1|0.06|ENSG00000154864|chr18:10680346-10680347|-/GG|frameshift_variant;PIEZO2|p.L2716Ffs*33|1|0.12|ENSG00000154864|chr18:10671638-10671639|-/A|frameshift_variant nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5-2|PIEZO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 538.2169189453125 2 538.797683 1075.58081 0.42539 0.0002292 -1.2353 -0.00066556 -0.80988 -0.00043636 538.7975375424332 70.935 0.5301 67.468 67.201 67.731 -3.467 21 14 2 0 0 0 0.87511 1 13415 13415 7.2892 0 1 1586500 43972 5030 29198 29218 43307 43307 0.046045903484582595 STVLRIERC 9 Unmodified _STVLRIERC_ 0 0 0 nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant;PIEZO2|p.Y2489Sfs*7|1|0.06|ENSG00000154864|chr18:10680346-10680347|-/GG|frameshift_variant;PIEZO2|p.L2716Ffs*33|1|0.12|ENSG00000154864|chr18:10671638-10671639|-/A|frameshift_variant nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5-2|PIEZO2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 538.797683 1075.58081 -0.089796 -4.8382E-05 -0.39619 -0.00021347 -0.48599 -0.00026185 538.7971972234387 67.644 0.52515 67.644 67.403 67.928 0 0.087919 0.00027401 NaN 7.2892 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1413400 43973 5030 29198 29218 0.046045903484582595 STVPYKELTG 10 Unmodified _STVPYKELTG_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant;MUC16|p.A4923T|1|0.08|ENSG00000181143|chr19:8962003-8962003|C/T|missense_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7915649414062 2 547.790047 1093.56554 -0.017797 -9.7489E-06 0.8422 0.00046135 0.8244 0.0004516 548.291669622462 79.064 0.41787 75.259 75.092 75.51 -3.8048 16 11 2 0 0 0 0.65108 1 14995 14995 16.149 2.2431 1 840220 43974 6711 29199 29219 43308 43308 0.022500020322240744 STVRHARFA 9 Unmodified _STVRHARFA_ 0 0 0 REV__ENSG00000164898|ENST00000297534|FMC1 REV__ENSG00000164898|ENST00000297534|FMC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2642211914062 2 522.788507 1043.56246 0.28214 0.0001475 -1.1622 -0.00060758 -0.88005 -0.00046008 523.289497331375 37.336 0.34619 34.999 34.842 35.188 -2.3375 14 9 2 0 0 0 0.87258 1 6632 6632 0.45834 0 1 398050 + 43975 17721 29200 29220 43309 43309 0.042422164887511826 STVSCFFF 8 Unmodified _STVSCFFF_ 0 0 0 REV__ENST00000413272.6_1_8:27931962-27941382:-|nuORF REV__ENST00000413272.6_1_8:27931962-27941382:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1175842285156 3 313.142323 936.40514 NaN NaN NaN NaN NaN NaN NaN 90.102 1 86.325 85.825 86.825 -3.7779 0 0 0 0.21486 1 17242 17242 4.3292 2.485 1 + 43976 21440 29201 29221 43310 43310 -0.06560624165638274 STWFRRDNP 9 Unmodified _STWFRRDNP_ 0 0 0 ENST00000337702.4_1_5:40716550-40728504:-|nuORF ENST00000337702.4_1_5:40716550-40728504:-|nuORF ENST00000337702.4_1_5:40716550-40728504:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2724609375 2 589.788704 1177.56285 0.065485 3.8623E-05 -1.4329 -0.00084512 -1.3674 -0.0008065 590.2882908542041 77.7 0.34959 74.041 73.919 74.268 -3.6588 12 9 2 0 0 0 0.81703 1 14838 14838 3.2813 0 1 1146500 43977 8819 29202 29222 43311 43311 -0.018824085820597247 STWHRRAPI 9 Unmodified _STWHRRAPI_ 0 0 0 REV__ENST00000396671.6_1_3:24174900-24185076:-|nuORF REV__ENST00000396671.6_1_3:24174900-24185076:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20782470703125 3 375.20883 1122.60466 NaN NaN NaN NaN NaN NaN NaN 54.393 1 54.393 53.893 54.893 0 0 0 0 0.23508 1 10371 10371 4.897 1.3005 1 + 43978 21284 29203 29223 43312 43312 0.04826191897132048 STWRATSTA 9 Unmodified _STWRATSTA_ 0 0 0 REV__ENST00000579152.1_1_17:17398683-17399571:-|nuORF REV__ENST00000579152.1_1_17:17398683-17399571:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25433349609375 2 490.743431 979.472308 0.24186 0.00011869 -0.14591 -7.1606E-05 0.095945 4.7084E-05 490.74332317782336 27.6 1.0362 27.6 27.216 28.252 0 84 29 4 0 0 0 0.71527 1 4947 4947 13.906 0 1 67941000 + 43979 23226 29204 29224 43313 43313 -0.018248776303494196 STWRKKLY 8 Unmodified _STWRKKLY_ 0 0 0 nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8|DNAH14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2642211914062 2 541.311284 1080.60801 NaN NaN NaN NaN NaN NaN NaN 63.55 1 63.55 63.05 64.05 0 0 0 0 0.21323 1 12221 12221 14.582 4.5078 1 43980 12518 29205 29225 43314 43314 0.07093441951133173 STWRLLERLV 10 Unmodified _STWRLLERLV_ 0 0 0 REV__nc|ENSG00000136305|Q9UHD4|CIDEB REV__nc|ENSG00000136305|Q9UHD4|CIDEB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.254638671875 3 424.918945 1271.73501 -0.45056 -0.00019145 0.58224 0.0002474 0.13168 5.5951E-05 424.9191900865207 81.469 0.83269 77.781 77.456 78.289 -3.6879 37 23 2 0 0 0 0.75765 1 15513 15513 3.3196 3.3196 1 1520100 + 43981 24051 29206 29226 43315 43315 0.11000743105455513 STYEYLEL 8 Unmodified _STYEYLEL_ 0 0 0 ENSG00000256870|ENST00000536262|SLC5A8 ENSG00000256870|ENST00000536262|SLC5A8 ENSG00000256870|ENST00000536262|SLC5A8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.0776672363281 3 339.830691 1016.47024 -2.2943 -0.00077966 -0.30222 -0.0001027 -2.5965 -0.00088236 339.8305041694883 14.713 1.2139 13.503 12.923 14.137 -1.2106 60 34 3 0 0 0 1.0277 1 2102 2102 0 0 1 517370 43982 7939 29207 29227 43316 43316 -0.037333511588144574 STYLHGSDP 9 Unmodified _STYLHGSDP_ 0 0 0 REV__PITRM1|p.A722T|1|0.34|ENSG00000107959|chr10:3147643-3147643|C/T|missense_variant REV__PITRM1|p.A722T|1|0.34|ENSG00000107959|chr10:3147643-3147643|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2558288574219 2 488.722164 975.429775 -0.16916 -8.2672E-05 0.3296 0.00016108 0.16044 7.841E-05 488.7222996780578 39.141 1.2969 36.592 36.157 37.454 -2.5491 129 36 5 0 0 0 0.28819 1 7267 7267 32.305 10.769 1 177600000 + 43983 24475 29208 29228 43317 43317 -0.05892272758569561 STYLHGSDP 9 Unmodified _STYLHGSDP_ 0 0 0 REV__PITRM1|p.A722T|1|0.34|ENSG00000107959|chr10:3147643-3147643|C/T|missense_variant REV__PITRM1|p.A722T|1|0.34|ENSG00000107959|chr10:3147643-3147643|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 488.722164 975.429775 0.23766 0.00011615 -0.074832 -3.6572E-05 0.16283 7.9578E-05 488.7221012892247 36.653 1.4006 36.653 36.282 37.683 0 0.02528 -0.00025005 NaN 32.305 146 39 5 NaN NaN NaN NaN 0 NaN NaN 0 162980000 + 43984 24475 29208 29228 -0.05892272758569561 STYLHGSDP 9 Unmodified _STYLHGSDP_ 0 0 0 REV__PITRM1|p.A722T|1|0.34|ENSG00000107959|chr10:3147643-3147643|C/T|missense_variant REV__PITRM1|p.A722T|1|0.34|ENSG00000107959|chr10:3147643-3147643|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 488.722164 975.429775 -0.16916 -8.2672E-05 0.3296 0.00016108 0.16044 7.841E-05 488.7222996780578 39.141 1.2969 36.592 36.157 37.454 -2.5491 -0.035888 0.00014526 NaN 32.305 129 36 5 NaN NaN NaN NaN 0 NaN NaN 0 177600000 + 43985 24475 29208 29228 -0.05892272758569561 STYLHGSDP 9 Unmodified _STYLHGSDP_ 0 0 0 REV__PITRM1|p.A722T|1|0.34|ENSG00000107959|chr10:3147643-3147643|C/T|missense_variant REV__PITRM1|p.A722T|1|0.34|ENSG00000107959|chr10:3147643-3147643|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 488.722164 975.429775 -0.097408 -4.7605E-05 0.34077 0.00016654 0.24336 0.00011894 488.72233643689856 39.004 1.5385 36.599 36.231 37.77 -2.4049 -0.028753 0.00015618 NaN 32.305 164 43 6 NaN NaN NaN NaN 0 NaN NaN 0 142430000 + 43986 24475 29208 29228 -0.05892272758569561 STYQAKPDPS 10 Unmodified _STYQAKPDPS_ 0 0 0 REV__ENST00000517923.1_1_8:23399285-23423875:+|nuORF REV__ENST00000517923.1_1_8:23399285-23423875:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7772216796875 2 547.261653 1092.50875 0.38315 0.00020968 -0.062145 -3.401E-05 0.32101 0.00017568 547.2615555348377 25.408 0.30787 25.408 25.186 25.494 0 19 8 3 0 0 0 0.12513 1 4379 4379 53.404 7.3831 1 4130500 + 43987 16934 29209 29229 43318 43318 -0.03380045524295383 STYQAKPDPS 10 Unmodified _STYQAKPDPS_ 0 0 0 REV__ENST00000517923.1_1_8:23399285-23423875:+|nuORF REV__ENST00000517923.1_1_8:23399285-23423875:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 547.261653 1092.50875 0.38315 0.00020968 -0.062145 -3.401E-05 0.32101 0.00017568 547.2615555348377 25.408 0.30787 25.408 25.186 25.494 0 0.041645 -4.462E-06 NaN 53.404 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 4130500 + 43988 16934 29209 29229 -0.03380045524295383 STYQAKPDPS 10 Unmodified _STYQAKPDPS_ 0 0 0 REV__ENST00000517923.1_1_8:23399285-23423875:+|nuORF REV__ENST00000517923.1_1_8:23399285-23423875:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.261653 1092.50875 0.2094 0.0001146 0.026962 1.4755E-05 0.23636 0.00012935 547.2615437025025 27.006 0.34883 25.371 25.178 25.527 -1.6347 0.0048086 9.3068E-05 NaN 53.404 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 4966500 + 43989 16934 29209 29229 -0.03380045524295383 STYQAKPDPS 10 Unmodified _STYQAKPDPS_ 0 0 0 REV__ENST00000517923.1_1_8:23399285-23423875:+|nuORF REV__ENST00000517923.1_1_8:23399285-23423875:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 547.261653 1092.50875 0.22169 0.00012132 -0.1406 -7.6946E-05 0.081089 4.4377E-05 547.2615641636613 27.242 0.24328 25.32 25.155 25.399 -1.9222 -0.046453 -9.0335E-05 NaN 53.404 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 4411000 + 43990 16934 29209 29229 -0.03380045524295383 STYSAPSPP 9 Unmodified _STYSAPSPP_ 0 0 0 REV__ENST00000380243.8_2_14:99981271-99981430:-|nuORF REV__ENST00000380243.8_2_14:99981271-99981430:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74749755859375 2 453.713808 905.413062 0.2806 0.00012731 -0.097689 -4.4323E-05 0.18291 8.2988E-05 453.7137237477538 35.247 1.8483 32.971 32.274 34.122 -2.2766 92 52 2 0 0 0 0.081249 1 6276 6276 54.774 0 1 1859400 + 43991 21152 29210 29230 43319 43319 -0.04342773644521003 SVAAAFAV 8 Unmodified _SVAAAFAV_ 0 0 0 ENST00000309755.8_2_5:137071438-137071570:-|nuORF ENST00000309755.8_2_5:137071438-137071570:-|nuORF ENST00000309755.8_2_5:137071438-137071570:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 368.2066650390625 2 368.205421 734.39629 NaN NaN NaN NaN NaN NaN NaN 103.71 1 99.492 98.992 99.992 -4.2183 0 0 0 0.22834 1 20391 20391 0.62683 0.50396 1 43992 8634 29211 29231 43320 43320 0.018467702601810743 SVAAVLEAN 9 Unmodified _SVAAVLEAN_ 0 0 0 REV__tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1 REV__tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2359619140625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 64.449 1 61.192 60.692 61.692 -3.2567 0 0 0 0.21065 1 12100 12100 20.454 0 1 + 43993 25239 29212 29232 43321 43321 0.019015056264606756 SVAITLNG 8 Unmodified _SVAITLNG_ 0 0 0 REV__nc|ENSG00000143921|Q9H221-2|ABCG8 REV__nc|ENSG00000143921|Q9H221-2|ABCG8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7203369140625 2 387.721436 773.428318 -0.42911 -0.00016638 0.57334 0.0002223 0.14423 5.5921E-05 387.72155409995565 67.776 0.59303 67.776 67.514 68.107 0 27 16 2 0 0 0 8448 1 13058 13058 0.25148 0.18749 1 2117700 + 43994 16758 29213 29233 43322 43322 0.03254137943326896 SVALLGSGP 9 Unmodified _SVALLGSGP_ 0 0 0 REV__nc|ENSG00000160199|P55347-2|PKNOX1 REV__nc|ENSG00000160199|P55347-2|PKNOX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 402.24810791015625 2 400.729261 799.443968 -0.19578 -7.8454E-05 0.14161 5.6748E-05 -0.054166 -2.1706E-05 400.7292699794213 68.437 2.4355 65.047 64.56 66.996 -3.3903 186 69 5 0 0 0 0.37087 1 13074 13074 7.4771 3.89 1 170160000 + 43995 24116 29214 29234 43323 43323 0.03622424460388629 SVALQHVLID 10 Unmodified _SVALQHVLID_ 0 0 0 REV__ENSG00000151005|ENST00000280605|TKTL2 REV__ENSG00000151005|ENST00000280605|TKTL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7715454101562 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 167.12 1 162.23 161.73 162.73 -4.8916 0 0 0 0.22588 1 32820 32820 12.241 0 1 + 43996 17049 29215 29235 43324 43324 0.07009701023071102 SVALSTSHN 9 Unmodified _SVALSTSHN_ 0 0 0 PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant;ENSG00000110851|ENST00000228437|PRDM4 PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.230712890625 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 23.733 1 23.733 23.233 24.233 0 0 0 0 0.23508 1 4060 4060 11.64 1.4569 1 43997 2592 29216 29236 43325 43325 -0.014885665216752386 SVALYSFQAT 10 Unmodified _SVALYSFQAT_ 0 0 0 GRAPL|p.L41Pfs*48|1|0.46|ENSG00000189152|chr17:19132684-19132685|CT/-|frameshift_variant;nc|ENSG00000189152|Q8TC17-2|GRAPL;ENSG00000189152|ENST00000344415|GRAPL;ENST00000571380.1_1_17:18939269-18950305:-|nuORF;ENSG00000154016|ENST00000284154|GRAP GRAPL|p.L41Pfs*48|1|0.46|ENSG00000189152|chr17:19132684-19132685|CT/-|frameshift_variant GRAPL|p.L41Pfs*48|1|0.46|ENSG00000189152|chr17:19132684-19132685|CT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7738037109375 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 22.142 1 20.688 20.188 21.188 -1.4535 0 0 0 0.22588 1 3516 3516 13.042 2.2185 1 43998 4990 29217 29237 43326 43326 -2.2671392343909247E-05 SVANERPG 8 Unmodified _SVANERPG_ 0 0 0 REV__sp|F5HF35|UL136_HCMVMProteinUL136OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL136PE=1SV=1 REV__sp|F5HF35|UL136_HCMVMProteinUL136OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL136PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.25384521484375 2 415.211766 828.40898 NaN NaN NaN NaN NaN NaN NaN 29.69 1 27.797 27.297 28.297 -1.8928 0 0 0 0.21323 1 5060 5060 14.582 5.2343 1 + 43999 24692 29218 29238 43327 43327 -0.0120881834757256 SVAPKEEVA 9 Unmodified _SVAPKEEVA_ 0 0 0 ENSG00000105641|ENST00000222248|SLC5A5 ENSG00000105641|ENST00000222248|SLC5A5 ENSG00000105641|ENST00000222248|SLC5A5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2502136230469 2 465.250557 928.486562 0.20579 9.5744E-05 -0.060177 -2.7997E-05 0.14561 6.7746E-05 465.2504088624888 84.55 0.77205 84.55 84.243 85.015 0 39 21 2 0 0 0 0.44262 1 16578 16578 23.148 6.2061 1 3958000 44000 2325 29219 29239 43328 43328 0.01945774797957256 SVASALSELS 10 Unmodified _SVASALSELS_ 0 0 0 ATG2A|p.G1473Afs*14|1|0.28|ENSG00000110046|chr11:64900540-64900540|C/-|frameshift_variant;ATG2A|p.G1888Afs*2|2|0.3|ENSG00000110046|chr11:64895127-64895127|C/-|frameshift_variant;ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A ATG2A|p.G1473Afs*14|1|0.28|ENSG00000110046|chr11:64900540-64900540|C/-|frameshift_variant ATG2A|p.G1473Afs*14|1|0.28|ENSG00000110046|chr11:64900540-64900540|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78814697265625 2 482.253297 962.492041 0.057575 2.7766E-05 0.82963 0.00040009 0.8872 0.00042786 482.25345995368826 106.6 1.0319 102.22 101.86 102.89 -4.3764 57 29 3 0 0 0 0.66352 1 20402 20402 5.7319 0 1 4326800 44001 249 29220 29240 43329 43329 0.009294535897652167 SVASLHWD 8 Unmodified _SVASLHWD_ 0 0 0 ADAMTS4|p.A158Gfs*2|2|0.1|ENSG00000158859|chr1:161198155-161198156|-/C|frameshift_variant;ADAMTS4|p.Q616Pfs*48|1|0.31|ENSG00000158859|chr1:161193277-161193278|-/G|frameshift_variant;ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4 ADAMTS4|p.A158Gfs*2|2|0.1|ENSG00000158859|chr1:161198155-161198156|-/C|frameshift_variant ADAMTS4|p.A158Gfs*2|2|0.1|ENSG00000158859|chr1:161198155-161198156|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2237548828125 2 457.721967 913.429381 -0.16744 -7.6643E-05 0.26588 0.0001217 0.098436 4.5056E-05 457.7220342159175 58.684 0.77122 55.773 55.407 56.179 -2.9105 39 21 2 0 0 0 0.45067 2 11235 11235;11282 30.225 3.3412 1 1422100 44002 65 29221 29241 43330;43331 43330 -0.030796476877753776 SVASLHWD 8 Unmodified _SVASLHWD_ 0 0 0 ADAMTS4|p.A158Gfs*2|2|0.1|ENSG00000158859|chr1:161198155-161198156|-/C|frameshift_variant;ADAMTS4|p.Q616Pfs*48|1|0.31|ENSG00000158859|chr1:161193277-161193278|-/G|frameshift_variant;ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4 ADAMTS4|p.A158Gfs*2|2|0.1|ENSG00000158859|chr1:161198155-161198156|-/C|frameshift_variant ADAMTS4|p.A158Gfs*2|2|0.1|ENSG00000158859|chr1:161198155-161198156|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2369689941406 2 457.721967 913.429381 0.029082 1.3312E-05 0.15704 7.1883E-05 0.18613 8.5194E-05 457.72195699896855 58.978 0.74511 55.726 55.348 56.093 -3.2517 34 20 2 0 0 0 0.45067 1 10921 10921 30.225 3.3412 1 1471300 44003 65 29221 29241 43332 43332 -0.030796476877753776 SVASLHWD 8 Unmodified _SVASLHWD_ 0 0 0 ADAMTS4|p.A158Gfs*2|2|0.1|ENSG00000158859|chr1:161198155-161198156|-/C|frameshift_variant;ADAMTS4|p.Q616Pfs*48|1|0.31|ENSG00000158859|chr1:161193277-161193278|-/G|frameshift_variant;ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4 ADAMTS4|p.A158Gfs*2|2|0.1|ENSG00000158859|chr1:161198155-161198156|-/C|frameshift_variant ADAMTS4|p.A158Gfs*2|2|0.1|ENSG00000158859|chr1:161198155-161198156|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2237243652344 2 457.721967 913.429381 0.097145 4.4465E-05 0.078414 3.5892E-05 0.17556 8.0357E-05 457.7218964639377 58.941 0.73195 55.736 55.368 56.1 -3.2052 38 20 2 0 0 0 0.45067 1 11002 11002 30.225 1.738 1 1638800 44004 65 29221 29241 43333 43333 -0.030796476877753776 SVASRTTK 8 Unmodified _SVASRTTK_ 0 0 0 ENST00000335727.13_2_22:40657916-40658036:+|nuORF ENST00000335727.13_2_22:40657916-40658036:+|nuORF ENST00000335727.13_2_22:40657916-40658036:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2414245605469 2 425.243067 848.47158 NaN NaN NaN NaN NaN NaN NaN 134.52 1 129.65 129.15 130.15 -4.8726 0 0 0 0.2074 1 25840 25840 19.439 4.8573 1 44005 8801 29222 29242 43334 43334 0.0412832772060483 SVATFLYQ 8 Unmodified _SVATFLYQ_ 0 0 0 ASIC3|p.Y66Sfs*9|1|0.07|ENSG00000213199|chr7:151049044-151049045|-/GCCACCTTCCTCTACCAGGTGGCTGAGAGGGTGCGCA|frameshift_variant;nc|ENSG00000213199|Q9UHC3-4|ASIC3;ENSG00000213199|ENST00000349064|ASIC3;nc|ENSG00000213199|Q9UHC3-2|ASIC3;nc|ENSG00000213199|Q9UHC3-3|ASIC3 ASIC3|p.Y66Sfs*9|1|0.07|ENSG00000213199|chr7:151049044-151049045|-/GCCACCTTCCTCTACCAGGTGGCTGAGAGGGTGCGCA|frameshift_variant ASIC3|p.Y66Sfs*9|1|0.07|ENSG00000213199|chr7:151049044-151049045|-/GCCACCTTCCTCTACCAGGTGGCTGAGAGGGTGCGCA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 127.65 1 123.03 122.53 123.53 -4.6172 0 0 0 0.2386 1 25170 25170 0.12286 0 1 44006 235 29223 29243 43335 43335 0.00354693631857117 SVAVLEHQLV 10 Unmodified _SVAVLEHQLV_ 0 0 0 TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant;nc|ENSG00000177238|Q6ZMU5-2|TRIM72;ENSG00000177238|ENST00000322122|TRIM72 TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7892456054688 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 165.27 1 160.32 159.82 160.82 -4.9484 0 0 0 0.22527 1 32283 32283 21.537 4.4241 1 44007 26520 29224 29244 43336 43336 0.07009701023071102 SVCPQPHYL 9 Unmodified _SVCPQPHYL_ 0 0 0 DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENST00000545453.5_2_13:73355107-73355970:-|nuORF DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2782592773438 2 522.252577 1042.4906 NaN NaN NaN NaN NaN NaN NaN 133.36 1 128.72 128.22 129.22 -4.6399 0 0 0 0.23508 1 26292 26292 8.5933 0 1 44008 838 29225 29245 43337 43337 -0.028944589799721143 SVDAHTAEV 9 Unmodified _SVDAHTAEV_ 0 0 0 nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4 nc|ENSG00000162521|Q09028-3|RBBP4 nc|ENSG00000162521|Q09028-3|RBBP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25848388671875 2 464.722164 927.429775 0.19923 9.2587E-05 -0.63095 -0.00029322 -0.43172 -0.00020063 464.7219284473338 26.899 0.51555 26.899 26.635 27.15 0 23 14 2 0 0 0 0.034704 1 4714 4714 78.149 44.047 1 1589800 44009 5339 29226 29246 43338 43338 -0.036842727585622015 SVDAHTAEV 9 Unmodified _SVDAHTAEV_ 0 0 0 nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4 nc|ENSG00000162521|Q09028-3|RBBP4 nc|ENSG00000162521|Q09028-3|RBBP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.246826171875 2 464.722164 927.429775 0.68784 0.00031965 -0.99388 -0.00046188 -0.30604 -0.00014223 464.72168068347173 28.611 0.447 26.655 26.399 26.846 -1.9561 31 12 3 0 0 0 0.07121 1 5141 5141 78.149 49.663 1 3251900 44010 5339 29226 29246 43339 43339 -0.036842727585622015 SVDCSTNNPSQ 11 Unmodified _SVDCSTNNPSQ_ 0 0 0 nc|ENSG00000120885|P10909-3|CLU;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU nc|ENSG00000120885|P10909-3|CLU nc|ENSG00000120885|P10909-3|CLU MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.335205078125 2 576.23531 1150.45607 -0.14543 -8.3801E-05 -0.63906 -0.00036825 -0.78449 -0.00045205 576.235114523732 56.344 0.55116 53.45 53.2 53.751 -2.8944 24 15 2 0 0 0 0.72351 1 10833 10833 10.151 3.0488 1 2482700 44011 3159 29227 29247 43340 43340 -0.11314371649382338 SVDESRRI 8 Unmodified _SVDESRRI_ 0 0 0 tr|U7SU71|U7SU71_FUSNUImidazolonepropionaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutIPE=3SV=1 tr|U7SU71|U7SU71_FUSNUImidazolonepropionaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutIPE=3SV=1 tr|U7SU71|U7SU71_FUSNUImidazolonepropionaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutIPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2543029785156 2 481.256705 960.498858 NaN NaN NaN NaN NaN NaN NaN 90.656 1 86.797 86.297 87.297 -3.8595 0 0 0 0.2074 1 17737 17737 19.439 5.5329 1 44012 26192 29228 29248 43341 43341 0.017028112609978052 SVDFDGLKY 9 Unmodified _SVDFDGLKY_ 0 0 0 REV__ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant REV__ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2823486328125 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 105.23 1 105.23 104.73 105.73 0 0 0 0 0.22193 1 20685 20685 17.113 2.2746 1 + 44013 19518 29229 29249 43342 43342 -0.022422425476179342 SVDISHFLY 9 Unmodified _SVDISHFLY_ 0 0 0 ENST00000281141.8_1_10:12292344-12292536:+|nuORF ENST00000281141.8_1_10:12292344-12292536:+|nuORF ENST00000281141.8_1_10:12292344-12292536:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2742309570312 2 540.771657 1079.52876 0.29207 0.00015795 -1.4789 -0.00079974 -1.1868 -0.0006418 541.2725645136616 127.59 0.83769 127.59 127.3 128.14 0 34 23 2 0 0 0 0.28819 1 25163 25163 32.305 7.6316 1 5245800 44014 8440 29230 29250 43343 43343 -0.007822497936558648 SVDKKGHVHYL 11 Unmodified _SVDKKGHVHYL_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant;ENST00000536999.1_1_12:6705170-6707214:-|nuORF CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 428.1724548339844 3 428.234933 1281.68297 -0.66898 -0.00028648 0.47202 0.00020213 -0.19696 -8.4345E-05 428.2351270533587 23.445 0.41829 21.657 21.426 21.844 -1.7886 28 11 3 0 0 0 0.96187 1 3739 3739 1.4551 0.34536 1 2636700 44015 514 29231 29251 43344 43344 0.053395796917357075 SVDKSQIP 8 Unmodified _SVDKSQIP_ 0 0 0 REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2355651855469 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 66.414 1 66.414 65.914 66.914 0 0 0 0 0.21486 1 12827 12827 12.532 0 1 + 44016 17671 29232 29252 43345 43345 0.019015056264720442 SVDPTQTEY 9 Unmodified _SVDPTQTEY_ 0 0 0 ENST00000483030.1_1_1:115263111-115268953:-|nuORF;nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 ENST00000483030.1_1_1:115263111-115268953:-|nuORF ENST00000483030.1_1_1:115263111-115268953:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.274169921875 2 520.232561 1038.45057 -0.04005 -2.0835E-05 -0.61241 -0.0003186 -0.65246 -0.00033943 520.2321954386304 48.859 2.6264 45.852 45.238 47.865 -3.0068 252 75 6 0 0 0 0.67531 1 9011 9011 7.9102 1.7044 1 140930000 44017 1050 29233 29253 43346 43346 -0.06711727169567894 SVDSPPAAA 9 Unmodified _SVDSPPAAA_ 0 0 0 nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A nc|ENSG00000115355|Q3V6T2-5|CCDC88A nc|ENSG00000115355|Q3V6T2-5|CCDC88A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3547973632812 1 814.394124 813.386848 0.015403 1.2544E-05 0.70399 0.00057333 0.71939 0.00058587 814.3944452257571 25.127 0.4539 23.274 23.116 23.57 -1.8534 20 12 2 0 0 0 0.6171 1 4154 4154 0.40827 0.335 1 909160 44018 2849 29234 29254 43347 43347 -0.02731042816003537 SVDSPPAAA 9 Unmodified _SVDSPPAAA_ 0 0 0 nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A nc|ENSG00000115355|Q3V6T2-5|CCDC88A nc|ENSG00000115355|Q3V6T2-5|CCDC88A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 814.394124 813.386848 0.50761 0.0004134 0.41416 0.00033729 0.92177 0.00075068 814.3942648362307 23.548 0.45573 23.548 23.303 23.758 0 0.11985 -0.00012921 NaN 0.40827 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 717320 44019 2849 29234 29254 -0.02731042816003537 SVDSPPAAA 9 Unmodified _SVDSPPAAA_ 0 0 0 nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A nc|ENSG00000115355|Q3V6T2-5|CCDC88A nc|ENSG00000115355|Q3V6T2-5|CCDC88A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 814.394124 813.386848 0.28545 0.00023247 0.54307 0.00044227 0.82852 0.00067475 814.3943423284461 24.997 0.55529 23.462 23.195 23.751 -1.5342 0.034387 -2.4224E-05 NaN 0.40827 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 801840 44020 2849 29234 29254 -0.02731042816003537 SVDSQILYY 9 Unmodified _SVDSQILYY_ 0 0 0 ENST00000484580.6_1_17:26883511-26887327:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS ENST00000484580.6_1_17:26883511-26887327:-|nuORF ENST00000484580.6_1_17:26883511-26887327:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.794677734375 2 544.268947 1086.52334 0.25639 0.00013954 0.404 0.00021989 0.66039 0.00035943 544.2690220607024 128.82 0.8028 124.19 123.8 124.6 -4.6292 60 22 4 0 0 0 0.026905 1 25390 25390 103.75 57.727 1 12369000 44021 1705 29235 29255 43348 43348 -0.01645973376139409 SVDSQILYY 9 Unmodified _SVDSQILYY_ 0 0 0 ENST00000484580.6_1_17:26883511-26887327:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS ENST00000484580.6_1_17:26883511-26887327:-|nuORF ENST00000484580.6_1_17:26883511-26887327:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78955078125 2 544.268947 1086.52334 0.12604 6.8601E-05 0.52712 0.0002869 0.65316 0.0003555 544.2690998087345 128.99 0.83707 124.17 123.77 124.61 -4.817 56 23 3 0 0 0 2.4099E-05 1 24728 24728 60.47 53.983 1 11796000 44022 1705 29235 29255 43349 43349 -0.01645973376139409 SVDSQILYY 9 Unmodified _SVDSQILYY_ 0 0 0 ENST00000484580.6_1_17:26883511-26887327:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS ENST00000484580.6_1_17:26883511-26887327:-|nuORF ENST00000484580.6_1_17:26883511-26887327:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7835693359375 2 544.268947 1086.52334 0.2444 0.00013302 0.74093 0.00040326 0.98533 0.00053628 544.2691016063945 128.88 0.94736 124.14 123.66 124.61 -4.7408 58 26 4 0 0 0 0.061087 1 24784 24784 81.89 35.869 1 11501000 44023 1705 29235 29255 43350 43350 -0.01645973376139409 SVDVRQIY 8 Unmodified _SVDVRQIY_ 0 0 0 nc|ENSG00000074219|Q15562-3|TEAD2;nc|ENSG00000074219|Q15562|TEAD2;nc|ENSG00000074219|Q15562-2|TEAD2;ENSG00000074219|ENST00000593945|TEAD2 nc|ENSG00000074219|Q15562-3|TEAD2 nc|ENSG00000074219|Q15562-3|TEAD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27130126953125 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 8448 1 11301 11301 0.68139 0 1 39769000 44024 1496 29236 29256 43351 43351 0.02332883409144415 SVDVSAPKA 9 Unmodified _SVDVSAPKA_ 0 0 0 AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant;AHNAK2|p.D4448Gfs*6|1|0.2|ENSG00000185567|chr14:104942108-104942109|-/C|frameshift_variant;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant;AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2279357910156 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 66.444 1 66.444 65.944 66.944 0 0 0 0 0.23508 1 12835 12835 11.64 0.81637 1 44025 104 29237 29257 43352 43352 0.019015056264720442 SVEAAAPPP 9 Unmodified _SVEAAAPPP_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;EIF2AK4|p.L856Wfs*7|1|0.47|ENSG00000128829|chr15:39990307-39990307|T/-|frameshift_variant;EIF2AK4|p.P1003Hfs*17|1|0.32|ENSG00000128829|chr15:40001069-40001069|C/-|frameshift_variant nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.493896484375 1 838.430509 837.423233 0.11727 9.8326E-05 0.3036 0.00025455 0.42087 0.00035287 838.4306563304006 52.507 2.3138 49.412 48.476 50.79 -3.0954 165 66 3 0 0 0 0.097781 2 9805 9805;9900 56.541 1.4018 1 19870000 44026 3543 29238 29258 43353;43354 43353 -0.0019816591928929483 SVEAIIVAD 9 Unmodified _SVEAIIVAD_ 0 0 0 REV__tr|U7SSC8|U7SSC8_FUSNUPolaraminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01586PE=3SV=1 REV__tr|U7SSC8|U7SSC8_FUSNUPolaraminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01586PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2378845214844 2 458.752933 915.491313 -0.51017 -0.00023404 0.54522 0.00025012 0.035051 1.608E-05 458.75322009956676 107.11 0.66174 102.79 102.47 103.14 -4.32 31 18 3 0 0 0 0.54076 1 21037 21037 34.102 0 1 3167500 + 44027 25050 29239 29259 43355 43355 0.030186589407207975 SVEAIVNAI 9 Unmodified _SVEAIVNAI_ 0 0 0 ENSG00000117408|ENST00000372343|IPO13 ENSG00000117408|ENST00000372343|IPO13 ENSG00000117408|ENST00000372343|IPO13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2404479980469 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 86.254 1 82.527 82.027 83.027 -3.727 0 0 0 0.23508 1 16859 16859 10.074 0 1 44028 2983 29240 29260 43356 43356 0.04662365177614447 SVEDSRNLY 9 Unmodified _SVEDSRNLY_ 0 0 0 ENSG00000116147|ENST00000367674|TNR;nc|ENSG00000116147|Q92752-2|TNR ENSG00000116147|ENST00000367674|TNR ENSG00000116147|ENST00000367674|TNR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.265380859375 2 541.759278 1081.504 0.43659 0.00023652 -0.55082 -0.00029841 -0.11423 -6.1887E-05 541.759079655223 38.966 0.34728 38.966 38.783 39.13 0 14 9 2 0 0 0 0.7906 1 7221 7221 18.146 5.1039 1 684090 44029 2911 29241 29261 43357 43357 -0.033489296670495605 SVEETGIHG 9 Unmodified _SVEETGIHG_ 0 0 0 ENST00000449228.5_1_19:47735894-47735990:-|nuORF ENST00000449228.5_1_19:47735894-47735990:-|nuORF ENST00000449228.5_1_19:47735894-47735990:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2528381347656 2 464.722164 927.429775 0.24102 0.00011201 -0.47779 -0.00022204 -0.23677 -0.00011003 464.7219174775505 28.502 0.51907 26.747 26.531 27.05 -1.7552 31 14 3 0 0 0 0.55979 1 4776 4776 15.847 2.3393 1 3021800 44030 9963 29242 29262 43358 43358 -0.036842727585622015 SVEKEREY 8 Unmodified _SVEKEREY_ 0 0 0 REV__ENST00000559630.1_1_15:49097750-49103222:-|nuORF REV__ENST00000559630.1_1_15:49097750-49103222:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26416015625 2 520.256371 1038.49819 -0.61283 -0.00031883 0.57437 0.00029882 -0.038452 -2.0005E-05 520.2566661878933 25.369 0.6883 23.835 23.609 24.297 -1.5342 76 19 5 0 0 0 0.76793 1 4210 4210 7.9102 3.1541 1 77504000 + 44031 23033 29243 29263 43359 43359 -0.019520281786981286 SVELHKVKE 9 Unmodified _SVELHKVKE_ 0 0 0 REV__nc|ENSG00000068400|Q4V328-4|GRIPAP1 REV__nc|ENSG00000068400|Q4V328-4|GRIPAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5596923828125 3 356.873113 1067.59751 -0.90456 -0.00032281 1.1125 0.00039703 0.20797 7.422E-05 356.8734681839499 24.791 0.58185 22.938 22.71 23.292 -1.8534 41 16 4 0 0 0 0.45972 1 4056 4056 8.1555 0 1 3377600 + 44032 14227 29244 29264 43360 43360 0.06641414506043475 SVELSLSNL 9 Unmodified _SVELSLSNL_ 0 0 0 ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant;ITGAL|p.D890Tfs*9|3|0.12|ENSG00000005844|chr16:30510924-30510924|G/-|frameshift_variant;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL;nc|ENSG00000005844|P20701-3|ITGAL ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76519775390625 2 481.263665 960.512776 -0.082619 -3.9761E-05 0.21511 0.00010353 0.13249 6.3765E-05 481.26367077639276 87.263 0.66069 87.263 86.946 87.607 0 31 18 2 0 0 0 0.10297 1 17004 17004 54.774 6.4277 1 3147000 44033 997 29245 29265 43361 43361 0.030940439694290944 SVERLNVY 8 Unmodified _SVERLNVY_ 0 0 0 REV__ENSG00000203697|ENST00000366872|CAPN8 REV__ENSG00000203697|ENST00000366872|CAPN8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2540588378906 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 57.855 1 57.855 57.355 58.355 0 0 0 0 0.21039 1 11065 11065 16.942 3.8998 1 + 44034 19495 29246 29266 43362 43362 0.02332883409144415 SVESSDYSYS 10 Unmodified _SVESSDYSYS_ 0 0 0 REV__ENST00000573209.1_1_17:7350776-7358776:+|nuORF REV__ENST00000573209.1_1_17:7350776-7358776:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2184143066406 3 375.152381 1122.43531 NaN NaN NaN NaN NaN NaN NaN 43.272 1 40.506 40.006 41.006 -2.7661 0 0 0 0.22588 1 7810 7810 6.6304 2.754 1 + 44035 18145 29247 29267 43363 43363 -0.12100638757397064 SVETADVKA 9 Unmodified _SVETADVKA_ 0 0 0 REV__P4HB|p.E87V|1|0.39|ENSG00000185624|chr17:81859273-81859273|T/A|missense_variant REV__P4HB|p.E87V|1|0.39|ENSG00000185624|chr17:81859273-81859273|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24072265625 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 60.461 1 60.461 59.961 60.961 0 0 0 0 0.1761 1 11590 11590 26.884 2.8631 1 + 44036 24422 29248 29268 43364 43364 0.0033318441828669165 SVETADVKA 9 Unmodified _SVETADVKA_ 0 0 0 REV__P4HB|p.E87V|1|0.39|ENSG00000185624|chr17:81859273-81859273|T/A|missense_variant REV__P4HB|p.E87V|1|0.39|ENSG00000185624|chr17:81859273-81859273|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23846435546875 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 60.711 1 60.711 60.211 61.211 0 0 0 0 0.16428 1 11644 11644 28.487 6.7402 1 + 44037 24422 29248 29268 43365 43365 0.0033318441828669165 SVETADVKA 9 Unmodified _SVETADVKA_ 0 0 0 REV__P4HB|p.E87V|1|0.39|ENSG00000185624|chr17:81859273-81859273|T/A|missense_variant REV__P4HB|p.E87V|1|0.39|ENSG00000185624|chr17:81859273-81859273|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2384338378906 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 63.178 1 60.18 59.68 60.68 -2.9975 0 0 0 0.12288 1 12201 12201 34.102 10.082 1 + 44038 24422 29248 29268 43366 43366 0.0033318441828669165 SVETRPPPP 9 Unmodified _SVETRPPPP_ 0 0 0 nc|ENSG00000104885|Q8TEK3-1|DOT1L nc|ENSG00000104885|Q8TEK3-1|DOT1L nc|ENSG00000104885|Q8TEK3-1|DOT1L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.263916015625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 49.553 1 46.554 46.054 47.054 -2.999 0 0 0 0.22621 1 9062 9062 15.847 0 1 44039 12268 29249 29269 43367 43367 0.023328834091330464 SVEVKFNKQ 9 Unmodified _SVEVKFNKQ_ 0 0 0 REV__ENSG00000115423|ENST00000389394|DNAH6 REV__ENSG00000115423|ENST00000389394|DNAH6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2012939453125 3 360.201229 1077.58186 -0.34917 -0.00012577 0.53242 0.00019178 0.18325 6.6009E-05 360.20134004286604 48.532 0.51903 45.663 45.382 45.901 -2.869 28 14 3 0 0 0 0.72996 1 9146 9146 4.897 0 1 2552300 + 44040 15430 29250 29270 43368 43368 0.0461712798901317 SVEVKFNKQ 9 Unmodified _SVEVKFNKQ_ 0 0 0 REV__ENSG00000115423|ENST00000389394|DNAH6 REV__ENSG00000115423|ENST00000389394|DNAH6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 360.201229 1077.58186 0.078162 2.8154E-05 -0.16306 -5.8733E-05 -0.084894 -3.0579E-05 360.2011373067734 45.754 0.44904 45.754 45.554 46.003 0 0.068752 -0.00056229 NaN 4.897 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1227800 + 44041 15430 29250 29270 0.0461712798901317 SVFERALSSV 10 Unmodified _SVFERALSSV_ 0 0 0 ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-4|SART3;nc|ENSG00000075856|Q15020-2|SART3 ENSG00000075856|ENST00000546815|SART3 ENSG00000075856|ENST00000546815|SART3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7720947265625 2 547.795663 1093.57677 0.16834 9.2214E-05 -0.045703 -2.5036E-05 0.12263 6.7178E-05 547.7955077691245 131.09 0.43192 126.46 126.17 126.61 -4.6359 18 11 2 0 0 0 0.15354 1 25864 25864 31.636 18.021 1 2470400 44042 1529 29251 29271 43369 43369 0.03372824126358864 SVFGDAYY 8 Unmodified _SVFGDAYY_ 0 0 0 CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant;CRTC1|p.S572Afs*6|3|0.59|ENSG00000105662|chr19:18777183-18777183|C/-|frameshift_variant;ENSG00000105662|ENST00000321949|CRTC1;nc|ENSG00000105662|Q6UUV9-2|CRTC1 CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5278015136719 2 461.203076 920.391599 0.37972 0.00017513 -0.58626 -0.00027038 -0.20653 -9.5255E-05 461.20286116463916 50.56 0.74891 50.56 50.166 50.914 0 26 21 2 0 0 0 0.98792 1 9516 9516 2.3027 0 1 763970 44043 727 29252 29272 43370 43370 -0.0717815867325271 SVFGDAYY 8 Unmodified _SVFGDAYY_ 0 0 0 CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant;CRTC1|p.S572Afs*6|3|0.59|ENSG00000105662|chr19:18777183-18777183|C/-|frameshift_variant;ENSG00000105662|ENST00000321949|CRTC1;nc|ENSG00000105662|Q6UUV9-2|CRTC1 CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.203076 920.391599 -0.04587 -2.1155E-05 -0.34269 -0.00015805 -0.38856 -0.00017921 461.20300082943663 53.627 0.65554 50.531 50.272 50.928 -3.0954 -0.014258 0.00010104 NaN 2.3027 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 735610 44044 727 29252 29272 -0.0717815867325271 SVFILYISH 9 Unmodified _SVFILYISH_ 0 0 0 REV__ENST00000397457.6_2_6:8015064-8015154:-|nuORF REV__ENST00000397457.6_2_6:8015064-8015154:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2008361816406 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 51.713 1 48.83 48.33 49.33 -2.8824 0 0 0 0.23508 1 9829 9829 5.2969 0.39987 1 + 44045 21304 29253 29273 43371 43371 0.05019217482708882 SVFRGIEAT 9 Unmodified _SVFRGIEAT_ 0 0 0 ENSG00000127362|ENST00000247879|TAS2R3 ENSG00000127362|ENST00000247879|TAS2R3 ENSG00000127362|ENST00000247879|TAS2R3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2645263671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 61.45 1 58.21 57.71 58.71 -3.2395 0 0 0 0.22962 1 11503 11503 14.838 1.7958 1 44046 3472 29254 29274 43372 43372 0.023328834091330464 SVFRITEQ 8 Unmodified _SVFRITEQ_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2635803222656 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 160.78 1 160.78 160.28 161.28 0 0 0 0 0.21039 1 32285 32285 16.942 0 1 44047 4896;12387 29255 29275 43373 43373 0.023328834091216777 SVFTSDLMS 9 Unmodified _SVFTSDLMS_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 329.0213317871094 3 329.488159 985.442648 -0.5074 -0.00016718 1.2161 0.00040068 0.70867 0.0002335 329.48850372165373 130.95 1.0095 126.17 125.67 126.67 -4.7725 83 28 4 0 0 0 0.88048 1 25148 25148 0.86438 0.51374 1 14126000 44048 6411 29256 29276 43374 43374 -0.05065577690686496 SVFTSDLMS 9 Unmodified _SVFTSDLMS_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 329.488159 985.442648 -0.44299 -0.00014596 1.0651 0.00035093 0.62209 0.00020497 329.48848628315704 125.98 0.89452 125.98 125.53 126.43 0 -0.11485 0.00010454 NaN 0.86438 63 24 3 NaN NaN NaN NaN 0 NaN NaN 0 13604000 44049 6411 29256 29276 -0.05065577690686496 SVFTSDLMS 9 Unmodified _SVFTSDLMS_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 329.488159 985.442648 -0.28846 -9.5045E-05 0.94928 0.00031278 0.66082 0.00021773 329.4884138021401 130.69 1.0245 126.06 125.65 126.68 -4.6359 -0.037058 -9.916E-06 NaN 0.86438 70 28 3 NaN NaN NaN NaN 0 NaN NaN 0 13889000 44050 6411 29256 29276 -0.05065577690686496 SVFTSDLMS 9 Unmodified _SVFTSDLMS_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 329.488159 985.442648 0.035092 1.1562E-05 0.64022 0.00021094 0.67531 0.00022251 329.4883189937347 131 1.1514 126.17 125.64 126.79 -4.8355 0.071204 -0.00031541 NaN 0.86438 89 32 4 NaN NaN NaN NaN 0 NaN NaN 0 24927000 44051 6411 29256 29276 -0.05065577690686496 SVFVGHPTP 9 Unmodified _SVFVGHPTP_ 0 0 0 REV__ENST00000585805.5_1_17:40985593-40985860:+|nuORF REV__ENST00000585805.5_1_17:40985593-40985860:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.1683349609375 3 314.167749 939.481417 NaN NaN NaN NaN NaN NaN NaN 97.574 1 93.476 92.976 93.976 -4.0978 0 0 0 0.23508 1 19148 19148 4.5289 0.93237 1 + 44052 23259 29257 29277 43375 43375 0.009255157259872249 SVGALVDEE 9 Unmodified _SVGALVDEE_ 0 0 0 REV__nc|ENSG00000008382|Q8N594-2|MPND REV__nc|ENSG00000008382|Q8N594-2|MPND MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2264709472656 2 459.724372 917.434192 -0.057234 -2.6312E-05 0.63254 0.0002908 0.57531 0.00026448 459.72457041776227 80.025 0.63398 76.515 76.121 76.755 -3.5102 27 17 2 0 0 0 0.55979 1 15575 15575 15.847 2.3393 1 1728500 + 44053 13900 29258 29278 43376 43376 -0.027828083356666866 SVGALVDEE 9 Unmodified _SVGALVDEE_ 0 0 0 REV__nc|ENSG00000008382|Q8N594-2|MPND REV__nc|ENSG00000008382|Q8N594-2|MPND MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2264404296875 2 459.724372 917.434192 -0.081281 -3.7367E-05 0.68874 0.00031663 0.60746 0.00027927 459.72467051823236 80.305 0.58743 76.466 76.18 76.767 -3.8392 24 16 2 0 0 0 0.46541 1 15247 15247 21.747 4.8044 1 724870 + 44054 13900 29258 29278 43377 43377 -0.027828083356666866 SVGALVDEE 9 Unmodified _SVGALVDEE_ 0 0 0 REV__nc|ENSG00000008382|Q8N594-2|MPND REV__nc|ENSG00000008382|Q8N594-2|MPND MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.226318359375 2 459.724372 917.434192 -0.15701 -7.218E-05 0.66076 0.00030377 0.50376 0.00023159 459.72459270699613 80.182 0.48438 76.506 76.247 76.731 -3.676 22 13 2 0 0 0 0.46541 1 15265 15265 21.747 4.8044 1 960800 + 44055 13900 29258 29278 43378 43378 -0.027828083356666866 SVGAPVKYPVY 11 Unmodified _SVGAPVKYPVY_ 0 0 0 REV__ENST00000517958.1_1_5:153783663-153789251:+|nuORF REV__ENST00000517958.1_1_5:153783663-153789251:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2755126953125 2 590.324057 1178.63356 NaN NaN NaN NaN NaN NaN NaN 165.47 1 160.49 159.99 160.99 -4.9811 0 0 0 0.22842 1 32345 32345 9.544 0.16085 1 + 44056 17690 29259 29279 43379 43379 0.051388716829023906 SVGECQQRNSH 11 Unmodified _SVGECQQRNSH_ 0 0 0 REV__ENST00000357700.10_1_10:5681695-5681884:-|nuORF REV__ENST00000357700.10_1_10:5681695-5681884:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7774658203125 2 622.775468 1243.53638 NaN NaN NaN NaN NaN NaN NaN 19.771 1 18.374 17.874 18.874 -1.3966 0 0 0 0.22501 1 3273 3273 12.241 3.6474 1 + 44057 20828 29260 29280 43380 43380 -0.07564465535688214 SVGFCFCESC 10 Unmodified _SVGFCFCESC_ 0 0 0 REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2645874023438 2 541.193013 1080.37147 0.30615 0.00016569 -3.1727 -0.001717 -2.8665 -0.0015513 541.1895899985994 144.58 0.10815 144.58 144.51 144.61 0 4 2 2 0 0 0 0.91149 1 28881 28881 1.4819 0 1 1053200 + 44058 14796 29261 29281 43381 43381 -0.1654973699137372 SVGFGQTIT 9 Unmodified _SVGFGQTIT_ 0 0 0 tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1 tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1 tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 455.35064697265625 2 455.23745 908.460347 NaN NaN NaN NaN NaN NaN NaN 74.009 1 70.645 70.145 71.145 -3.3643 0 0 0 0.23508 1 14434 14434 10.824 0 1 44059 25919 29262 29282 43382 43382 0.002455056264693667 SVGFRLSVD 9 Unmodified _SVGFRLSVD_ 0 0 0 nc|ENSG00000077942|P23142-2|FBLN1;nc|ENSG00000077942|P23142-3|FBLN1;nc|ENSG00000077942|P23142-4|FBLN1;ENSG00000077942|ENST00000327858|FBLN1;ENST00000476366.1_1_22:45937122-45946826:+|nuORF nc|ENSG00000077942|P23142-2|FBLN1 nc|ENSG00000077942|P23142-2|FBLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2642822265625 2 490.263999 978.513445 0.064146 3.1448E-05 0.10466 5.1312E-05 0.16881 8.2761E-05 490.2640316435626 59.279 1.7152 56.368 55.784 57.5 -2.9105 129 48 4 0 0 0 0.57447 1 11297 11297 14.838 0 1 42586000 44060 1565 29263 29283 43383 43383 0.02332883409144415 SVGGLFWMF 9 Unmodified _SVGGLFWMF_ 0 0 0 nc|ENSG00000120925|Q96K19-4|RNF170;nc|ENSG00000120925|Q96K19-6|RNF170;ENSG00000120925|ENST00000527424|RNF170 nc|ENSG00000120925|Q96K19-4|RNF170 nc|ENSG00000120925|Q96K19-4|RNF170 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2694702148438 2 522.254588 1042.49462 NaN NaN NaN NaN NaN NaN NaN 121.9 1 117.35 116.85 117.85 -4.5476 0 0 0 0.20155 1 24026 24026 23.148 5.0021 1 44061 3163 29264 29284 43384 43384 -0.024923694862764023 SVGIITKNM 9 Unmodified _SVGIITKNM_ 0 0 0 REV__nc|ENSG00000136869|O00206-3|TLR4 REV__nc|ENSG00000136869|O00206-3|TLR4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7716979980469 2 481.770603 961.526652 NaN NaN NaN NaN NaN NaN NaN 164.99 1 164.99 164.49 165.49 0 0 0 0 0.23508 1 33428 33428 7.2892 0.93513 1 + 44062 16357 29265 29285 43385 43385 0.04434998196882134 SVGILWPDVT 10 Unmodified _SVGILWPDVT_ 0 0 0 ENST00000273317.4_1_3:45720128-45720437:+|nuORF ENST00000273317.4_1_3:45720128-45720437:+|nuORF ENST00000273317.4_1_3:45720128-45720437:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7838745117188 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 165.47 1 160.48 159.98 160.98 -4.9811 0 0 0 0.22576 1 32344 32344 14.838 2.5976 1 44063 8420 29266 29286 43386 43386 0.03634609757477847 SVGKQRRPPG 10 Unmodified _SVGKQRRPPG_ 0 0 0 REV__ENST00000519909.1_1_8:575958-577112:-|nuORF REV__ENST00000519909.1_1_8:575958-577112:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2598266601562 2 541.314889 1080.61522 NaN NaN NaN NaN NaN NaN NaN 140.66 1 135.67 135.17 136.17 -4.9877 0 0 0 0.22588 1 27074 27074 13.042 2.9685 1 + 44064 22628 29267 29287 43387 43387 0.0781417455157225 SVGLFSLIHL 10 Unmodified _SVGLFSLIHL_ 0 0 0 REV__ENSG00000172772|ENST00000395079|OR10W1 REV__ENSG00000172772|ENST00000395079|OR10W1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7786865234375 2 543.321317 1084.62808 0.33671 0.00018294 1.7036 0.00092561 2.0403 0.0011085 543.824908025243 138.08 0.2108 138.08 137.94 138.15 0 7 5 2 0 0 0 0.71097 1 27379 27379 10.074 0.6908 1 2197800 + 44065 18307 29268 29288 43388 43388 0.08915192891095103 SVGLQTDPPR 10 Unmodified _SVGLQTDPPR_ 0 0 0 nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.56024169921875 3 357.192734 1068.55637 -1.3278 -0.00047429 -0.54754 -0.00019558 -1.8754 -0.00066987 357.1922531756651 21.852 1.4451 20.131 19.779 21.224 -1.7211 60 41 3 0 0 0 0.75318 1 3468 3468 4.7159 0 1 984840 44066 4806 29269 29289 43389 43389 0.02483653466561009 SVGLVYWEI 9 Unmodified _SVGLVYWEI_ 0 0 0 nc|ENSG00000123612|Q8NER5-2|ACVR1C;nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000123612|Q8NER5-4|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C nc|ENSG00000123612|Q8NER5-2|ACVR1C nc|ENSG00000123612|Q8NER5-2|ACVR1C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2709350585938 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 85.524 1 81.86 81.36 82.36 -3.6641 0 0 0 0.21065 1 16720 16720 20.454 1.1966 1 44067 3277 29270 29290 43390 43390 0.024552247287601858 SVGNLFFLF 9 Unmodified _SVGNLFFLF_ 0 0 0 REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.28125 2 522.28166 1042.54877 NaN NaN NaN NaN NaN NaN NaN 121.66 1 117.11 116.61 117.61 -4.5476 0 0 0 0.1924 1 23979 23979 24.674 4.2203 1 + 44068 20821 29271 29291 43391 43391 0.029195459369248056 SVGQVVVSGP 10 Unmodified _SVGQVVVSGP_ 0 0 0 REV__ENST00000492310.5_1_7:43153648-43477745:+|nuORF REV__ENST00000492310.5_1_7:43153648-43477745:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2372741699219 2 464.758549 927.502546 0.28911 0.00013437 -0.92518 -0.00042999 -0.63607 -0.00029562 464.75811833437945 30.345 0.49264 28.453 28.134 28.627 -1.8928 28 13 3 0 0 0 0.83271 1 5158 5158 16.149 0 1 1537000 + 44069 22333 29272 29292 43392 43392 0.03589481034862274 SVGSSNHQPD 10 Unmodified _SVGSSNHQPD_ 0 0 0 ENST00000551245.5_1_12:49724607-49724727:+|nuORF ENST00000551245.5_1_12:49724607-49724727:+|nuORF ENST00000551245.5_1_12:49724607-49724727:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.2017517089844 3 343.152827 1026.43665 NaN NaN NaN NaN NaN NaN NaN 90.879 1 86.784 86.284 87.284 -4.0946 0 0 0 0.22588 1 17314 17314 3.5871 0 1 44070 11183 29273 29293 43393 43393 -0.07550959877994501 SVGSVSIL 8 Unmodified _SVGSVSIL_ 0 0 0 REV__nc|ENSG00000053770|Q9H0R1-2|AP5M1 REV__nc|ENSG00000053770|Q9H0R1-2|AP5M1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2098388671875 2 381.223811 760.433069 NaN NaN NaN NaN NaN NaN NaN 139.26 1 134.31 133.81 134.81 -4.952 0 0 0 0.23899 1 26789 26789 1.3295 0 1 + 44071 14099 29274 29294 43394 43394 0.04327022086101806 SVGWLFNTY 9 Unmodified _SVGWLFNTY_ 0 0 0 ENST00000307063.8_1_5:159519224-159519386:-|nuORF ENST00000307063.8_1_5:159519224-159519386:-|nuORF ENST00000307063.8_1_5:159519224-159519386:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7794799804688 2 543.766374 1085.5182 NaN NaN NaN NaN NaN NaN NaN 44.78 1 42.032 41.532 42.532 -2.7475 0 0 0 0.22962 1 8109 8109 14.838 3.198 1 44072 8611 29275 29295 43395 43395 -0.021142324480933894 SVGYLISLDD 10 Unmodified _SVGYLISLDD_ 0 0 0 ENST00000485741.6_1_7:72418925-72423926:-|nuORF;ENST00000388955.8_1_7:72418925-72423926:-|nuORF ENST00000485741.6_1_7:72418925-72423926:-|nuORF ENST00000485741.6_1_7:72418925-72423926:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27294921875 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 139.92 1 139.92 139.42 140.42 0 0 0 0 0.22588 1 27829 27829 10.074 1.3285 1 44073 9349 29276 29296 43396 43396 -0.0031399072170188447 SVGYRRNNQ 9 Unmodified _SVGYRRNNQ_ 0 0 0 REV__ENST00000557163.1_1_14:61746812-61748042:-|nuORF REV__ENST00000557163.1_1_14:61746812-61748042:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 546.7947387695312 2 547.278503 1092.54245 NaN NaN NaN NaN NaN NaN NaN 165.8 1 165.8 165.3 166.3 0 0 0 0 0.23508 1 33692 33692 10.824 0.75 1 + 44074 18755 29277 29297 43397 43397 -0.00011579241868275858 SVHGPPPA 8 Unmodified _SVHGPPPA_ 0 0 0 REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2103271484375 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 91.991 1 91.991 91.491 92.491 0 0 0 0 0.23366 1 17985 17985 0.12286 0 1 + 44075 24467 29278 29298 43398 43398 -0.0029899802534600894 SVHGPPPA 8 Unmodified _SVHGPPPA_ 0 0 0 REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20904541015625 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 60.754 1 57.821 57.321 58.321 -2.9333 0 0 0 0.23366 1 11697 11697 0.12286 0 1 + 44076 24467 29278 29298 43399 43399 -0.0029899802534600894 SVHGPPPA 8 Unmodified _SVHGPPPA_ 0 0 0 REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2186279296875 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 63.737 1 60.739 60.239 61.239 -2.9975 0 0 0 0.2343 1 12320 12320 0.30703 0.18417 1 + 44077 24467 29278 29298 43400 43400 -0.0029899802534600894 SVHGPPPA 8 Unmodified _SVHGPPPA_ 0 0 0 REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21075439453125 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 63.906 1 60.908 60.408 61.408 -2.9975 0 0 0 0.23749 1 12354 12354 0.0082765 0 1 + 44078 24467 29278 29298 43401 43401 -0.0029899802534600894 SVHGPPPA 8 Unmodified _SVHGPPPA_ 0 0 0 REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20843505859375 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 81.72 1 78.163 77.663 78.663 -3.557 0 0 0 0.23749 1 15964 15964 0.0082765 0 1 + 44079 24467 29278 29298 43402 43402 -0.0029899802534600894 SVHGPPPA 8 Unmodified _SVHGPPPA_ 0 0 0 REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2102966308594 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 108.28 1 103.96 103.46 104.46 -4.32 0 0 0 0.23749 1 21334 21334 0.0082765 0 1 + 44080 24467 29278 29298 43403 43403 -0.0029899802534600894 SVHGPPPA 8 Unmodified _SVHGPPPA_ 0 0 0 REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2120361328125 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 127.47 1 122.85 122.35 123.35 -4.6172 0 0 0 0.23749 1 25137 25137 0.0082765 0 1 + 44081 24467 29278 29298 43404 43404 -0.0029899802534600894 SVHGPPPA 8 Unmodified _SVHGPPPA_ 0 0 0 REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2102355957031 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 81.657 1 77.818 77.318 78.318 -3.8392 0 0 0 0.23749 1 15505 15505 0.0082765 0 1 + 44082 24467 29278 29298 43405 43405 -0.0029899802534600894 SVHGPPPA 8 Unmodified _SVHGPPPA_ 0 0 0 REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2109069824219 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 99.09 1 95.133 94.633 95.633 -3.9564 0 0 0 0.23366 1 19022 19022 0.12286 0 1 + 44083 24467 29278 29298 43406 43406 -0.0029899802534600894 SVHGPPPA 8 Unmodified _SVHGPPPA_ 0 0 0 REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2113037109375 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 125.44 1 120.79 120.29 121.29 -4.6495 0 0 0 0.23749 1 24134 24134 0.0082765 0 1 + 44084 24467 29278 29298 43407 43407 -0.0029899802534600894 SVHGPPPA 8 Unmodified _SVHGPPPA_ 0 0 0 REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant REV__PIAS3|p.R592H|1|0.66|ENSG00000131788|chr1:145849558-145849558|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.20916748046875 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 127.7 1 123 122.5 123.5 -4.6998 0 0 0 0.23749 1 24567 24567 0.0082765 0 1 + 44085 24467 29278 29298 43408 43408 -0.0029899802534600894 SVHLYYLF 8 Unmodified _SVHLYYLF_ 0 0 0 nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-3|DROSHA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 347.8519287109375 3 347.851649 1040.53312 NaN NaN NaN NaN NaN NaN NaN 13.283 1 13.283 12.783 13.783 0 0 0 0 0.23899 1 1907 1907 1.3295 1.0641 1 44086 2738 29279 29299 43409 43409 0.014472594198878141 SVHPGPTR 8 Unmodified _SVHPGPTR_ 0 0 0 REV__ENST00000397068.7_2_11:3661554-3663324:-|nuORF REV__ENST00000397068.7_2_11:3661554-3663324:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2506103515625 2 425.730126 849.4457 0.28705 0.0001222 -0.23033 -9.806E-05 0.056711 2.4144E-05 425.72997793030174 30.625 0.35437 28.508 28.329 28.683 -2.1167 18 9 2 0 0 0 0.99312 1 5567 5567 10.074 0 1 1189100 + 44087 21293 29280 29300 43410 43410 0.014954782689869717 SVHVNAIQPN 10 Unmodified _SVHVNAIQPN_ 0 0 0 ENST00000312655.8_1_17:57474537-57474684:+|nuORF ENST00000312655.8_1_17:57474537-57474684:+|nuORF ENST00000312655.8_1_17:57474537-57474684:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2661743164062 2 539.78563 1077.55671 0.33322 0.00017987 0.066727 3.6018E-05 0.39995 0.00021589 539.7856646092016 26.105 1.3415 26.105 25.632 26.974 0 127 38 5 0 0 0 0.72703 1 4483 4483 9.3831 6.1018 1 164040000 44088 8660 29281 29301 43411 43411 0.02103073186435722 SVHVNAIQPN 10 Unmodified _SVHVNAIQPN_ 0 0 0 ENST00000312655.8_1_17:57474537-57474684:+|nuORF ENST00000312655.8_1_17:57474537-57474684:+|nuORF ENST00000312655.8_1_17:57474537-57474684:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2724609375 2 539.78563 1077.55671 1.0407 0.00056174 -0.54882 -0.00029624 0.49186 0.0002655 539.7853414324657 27.953 1.2467 25.997 25.563 26.81 -1.9561 116 35 5 0 0 0 0.4204 1 4994 4994 27.629 0 1 155050000 44089 8660 29281 29301 43412 43412 0.02103073186435722 SVIDGVTVLG 10 Unmodified _SVIDGVTVLG_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77642822265625 2 480.274032 958.533512 -0.039729 -1.9081E-05 -0.054104 -2.5985E-05 -0.093833 -4.5066E-05 480.27403874747176 72.874 1.2632 72.874 72.471 73.734 0 130 35 5 0 0 0 0.51199 1 14125 14125 24.021 0 1 214700000 44090 1097 29282 29302 43413 43413 0.052586343490816034 SVIDGVTVLG 10 Unmodified _SVIDGVTVLG_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7779846191406 2 480.274032 958.533512 0.10429 5.0086E-05 -0.19538 -9.3834E-05 -0.091089 -4.3748E-05 480.27396075148965 76.328 1.6615 72.605 72.135 73.796 -3.7227 155 47 5 0 0 0 0.32088 2 14453 14453;14501 36.127 12.106 1 209230000 44091 1097 29282 29302 43414;43415 43414 0.052586343490816034 SVIDHIHLI 9 Unmodified _SVIDHIHLI_ 0 0 0 nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000123159|ENST00000393033|GIPC1 nc|ENSG00000123159|O14908-2|GIPC1 nc|ENSG00000123159|O14908-2|GIPC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.70166015625 2 523.803291 1045.59203 -0.12825 -6.718E-05 -3.3501 -0.0017548 -3.4783 -0.001822 523.8008084705688 141.73 0.7049 137.08 136.68 137.38 -4.6493 25 19 2 0 0 0 0.49001 1 28023 28023 21.747 4.6338 1 6243400 44092 3254 29283 29303 43416 43416 0.07105735714230832 SVIDHIHLI 9 Unmodified _SVIDHIHLI_ 0 0 0 nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000123159|ENST00000393033|GIPC1 nc|ENSG00000123159|O14908-2|GIPC1 nc|ENSG00000123159|O14908-2|GIPC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6981811523438 2 523.803291 1045.59203 -0.45652 -0.00023913 -1.7548 -0.00091917 -2.2113 -0.0011583 523.8018244011515 142.19 0.57678 137.17 136.93 137.51 -5.0261 24 16 2 0 0 0 0.36689 1 27400 27400 26.884 9.9414 1 6341000 44093 3254 29283 29303 43417 43417 0.07105735714230832 SVIEQIVYV 9 Unmodified _SVIEQIVYV_ 0 0 0 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 525.0482788085938 2 525.297507 1048.58046 NaN NaN NaN NaN NaN NaN NaN 162.25 1 162.25 161.75 162.75 0 0 0 0 0.15147 1 32608 32608 30.225 8.4782 1 44094 1553 29284 29304 43418 43418 0.05811493900228015 SVITVTLKQ 9 Unmodified _SVITVTLKQ_ 0 0 0 REV__SYT16|p.R373S|1|0.18|ENSG00000139973|chr14:62080959-62080959|G/T|missense_variant REV__SYT16|p.R373S|1|0.18|ENSG00000139973|chr14:62080959-62080959|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 494.7557678222656 2 494.8055 987.596446 NaN NaN NaN NaN NaN NaN NaN 149.49 1 144.36 143.86 144.86 -5.1204 0 0 0 0.19704 1 28966 28966 0.87518 0.75231 1 + 44095 24764 29285 29305 43419 43419 0.10215200137133706 SVIVSSTG 8 Unmodified _SVIVSSTG_ 0 0 0 REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11 REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2048645019531 2 375.205618 748.396684 NaN NaN NaN NaN NaN NaN NaN 123.72 1 123.72 123.22 124.22 0 0 0 0 0.21486 1 24388 24388 2.3027 0 1 + 44096 14293 29286 29306 43420 43420 0.012421451893828817 SVKEYKEV 8 Unmodified _SVKEYKEV_ 0 0 0 ENST00000461247.1_1_9:17415842-17444242:+|nuORF;CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant;CNTLN|p.M1308*|1|0.36|ENSG00000044459|chr9:17484355-17484355|A/-|frameshift_variant;CNTLN|p.M1308Nfs*9|1|0.46|ENSG00000044459|chr9:17484354-17484355|-/A|frameshift_variant;CNTLN|p.T1324Dfs*27|1|0.14|ENSG00000044459|chr9:17484406-17484407|-/A|frameshift_variant;CNTLN|p.I1388Nfs*3|1|0.3|ENSG00000044459|chr9:17502587-17502588|-/A|frameshift_variant;nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN ENST00000461247.1_1_9:17415842-17444242:+|nuORF ENST00000461247.1_1_9:17415842-17444242:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.7623596191406 2 491.266207 980.517862 0.087802 4.3134E-05 1.5889 0.00078058 1.6767 0.00082371 491.2661140110092 88.275 0.76365 88.275 87.919 88.682 0 31 21 3 0 0 0 0.8748 1 17228 17228 14.838 2.5976 1 1304400 44097 598 29287 29307 43421 43421 0.026823478320466165 SVKEYKEV 8 Unmodified _SVKEYKEV_ 0 0 0 ENST00000461247.1_1_9:17415842-17444242:+|nuORF;CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant;CNTLN|p.M1308*|1|0.36|ENSG00000044459|chr9:17484355-17484355|A/-|frameshift_variant;CNTLN|p.M1308Nfs*9|1|0.46|ENSG00000044459|chr9:17484354-17484355|-/A|frameshift_variant;CNTLN|p.T1324Dfs*27|1|0.14|ENSG00000044459|chr9:17484406-17484407|-/A|frameshift_variant;CNTLN|p.I1388Nfs*3|1|0.3|ENSG00000044459|chr9:17502587-17502588|-/A|frameshift_variant;nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN ENST00000461247.1_1_9:17415842-17444242:+|nuORF ENST00000461247.1_1_9:17415842-17444242:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 491.266207 980.517862 0.076386 3.7526E-05 0.63706 0.00031297 0.71345 0.00035049 491.26643433938284 92.26 0.96985 88.335 87.857 88.827 -3.9251 0.077325 0.00019348 NaN 14.838 30 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1618100 44098 598 29287 29307 0.026823478320466165 SVKEYKEV 8 Unmodified _SVKEYKEV_ 0 0 0 ENST00000461247.1_1_9:17415842-17444242:+|nuORF;CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant;CNTLN|p.M1308*|1|0.36|ENSG00000044459|chr9:17484355-17484355|A/-|frameshift_variant;CNTLN|p.M1308Nfs*9|1|0.46|ENSG00000044459|chr9:17484354-17484355|-/A|frameshift_variant;CNTLN|p.T1324Dfs*27|1|0.14|ENSG00000044459|chr9:17484406-17484407|-/A|frameshift_variant;CNTLN|p.I1388Nfs*3|1|0.3|ENSG00000044459|chr9:17502587-17502588|-/A|frameshift_variant;nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN ENST00000461247.1_1_9:17415842-17444242:+|nuORF ENST00000461247.1_1_9:17415842-17444242:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 491.266207 980.517862 0.34412 0.00016905 -0.20604 -0.00010122 0.13808 6.7834E-05 491.26612566968424 92.282 0.51906 88.187 87.948 88.467 -4.0946 -0.070622 -0.00063489 NaN 14.838 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1166800 44099 598 29287 29307 0.026823478320466165 SVKEYKEV 8 Unmodified _SVKEYKEV_ 0 0 0 ENST00000461247.1_1_9:17415842-17444242:+|nuORF;CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant;CNTLN|p.M1308*|1|0.36|ENSG00000044459|chr9:17484355-17484355|A/-|frameshift_variant;CNTLN|p.M1308Nfs*9|1|0.46|ENSG00000044459|chr9:17484354-17484355|-/A|frameshift_variant;CNTLN|p.T1324Dfs*27|1|0.14|ENSG00000044459|chr9:17484406-17484407|-/A|frameshift_variant;CNTLN|p.I1388Nfs*3|1|0.3|ENSG00000044459|chr9:17502587-17502588|-/A|frameshift_variant;nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN ENST00000461247.1_1_9:17415842-17444242:+|nuORF ENST00000461247.1_1_9:17415842-17444242:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 491.266207 980.517862 -0.12563 -6.1717E-05 0.53742 0.00026402 0.41179 0.0002023 491.2664606161613 92.042 0.65348 88.234 87.928 88.582 -3.8083 -0.024042 9.5587E-05 NaN 14.838 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1271200 44100 598 29287 29307 0.026823478320466165 SVKKGKKM 8 Unmodified _SVKKGKKM_ 0 0 0 REV__nc|ENSG00000142949|P10586-2|PTPRF REV__nc|ENSG00000142949|P10586-2|PTPRF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.28424072265625 2 453.28368 904.552807 NaN NaN NaN NaN NaN NaN NaN 65.593 1 62.546 62.046 63.046 -3.047 0 0 0 0.21486 1 12698 12698 2.5775 0.27475 1 + 44101 16695 29288 29308 43422 43422 0.09671312159014178 SVKKLVQNEKH 11 Unmodified _SVKKLVQNEKH_ 0 0 0 REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 655.4011840820312 2 655.382968 1308.75138 NaN NaN NaN NaN NaN NaN NaN 171.47 1 166.55 166.05 167.05 -4.9149 0 0 0 0.22632 1 33961 33961 0.026206 0 1 + 44102 23489 29289 29309 43423 43423 0.10935824271518868 SVKLVTKTLY 10 Unmodified _SVKLVTKTLY_ 0 0 0 REV__nc|ENSG00000166448|Q8N3G9|TMEM130 REV__nc|ENSG00000166448|Q8N3G9|TMEM130 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3245239257812 2 576.355357 1150.69616 0.28545 0.00016452 4.167 0.0024017 4.4524 0.0025662 576.8585078455635 120.43 0.30592 115.91 115.72 116.02 -4.5221 14 8 2 0 0 0 1.1302 1 23743 23743 0.043787 0 1 2699800 + 44103 17851 29290 29310 43424 43424 0.12684017751121246 SVKVKGPI 8 Unmodified _SVKVKGPI_ 0 0 0 REV__nc|ENSG00000165525|O60524-2|NEMF REV__nc|ENSG00000165525|O60524-2|NEMF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 414.269287109375 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 132.5 1 127.65 127.15 128.15 -4.8527 0 0 0 0.21486 1 25451 25451 1.8442 1.0506 1 + 44104 17779 29291 29311 43425 43425 0.10743580628081872 SVKVNRKL 8 Unmodified _SVKVNRKL_ 0 0 0 REV__ENSG00000233412|ENST00000641450|OR5H15 REV__ENSG00000233412|ENST00000641450|OR5H15 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.199462890625 3 315.206426 942.597449 NaN NaN NaN NaN NaN NaN NaN 97.065 1 92.83 92.33 93.33 -4.2348 0 0 0 0.21486 1 18535 18535 1.3295 0 1 + 44105 19756 29292 29312 43426 43426 0.12385459296706358 SVKVNRKL 8 Unmodified _SVKVNRKL_ 0 0 0 REV__ENSG00000233412|ENST00000641450|OR5H15 REV__ENSG00000233412|ENST00000641450|OR5H15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.2067565917969 3 315.206426 942.597449 NaN NaN NaN NaN NaN NaN NaN 82.141 1 78.453 77.953 78.953 -3.6879 0 0 0 0.21486 1 15662 15662 3.2813 0 1 + 44106 19756 29292 29312 43427 43427 0.12385459296706358 SVLAHSHR 8 Unmodified _SVLAHSHR_ 0 0 0 REV__ENSG00000140443|ENST00000650285|IGF1R REV__ENSG00000140443|ENST00000650285|IGF1R MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.74993896484375 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 116.39 1 111.9 111.4 112.4 -4.486 0 0 0 0.21486 1 22949 22949 10.824 0.64053 1 + 44107 16574 29293 29313 43428 43428 0.026625695346069733 SVLDSTAKV 9 Unmodified _SVLDSTAKV_ 0 0 0 TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B;nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;TBC1D8B|p.V302Kfs*5|1|0.05|ENSG00000133138|chrX:106826105-106826106|-/AAAATGG|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24072265625 2 460.258382 918.502212 -0.085243 -3.9234E-05 0.086452 3.979E-05 0.0012087 5.5629E-07 460.2583875788687 60.472 0.59273 60.472 60.245 60.838 0 36 16 3 0 0 0 0.34246 1 11590 11590 40.239 10.399 1 5052800 44108 3788 29294 29314 43429 43429 0.039700613149989294 SVLDSTAKV 9 Unmodified _SVLDSTAKV_ 0 0 0 TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B;nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;TBC1D8B|p.V302Kfs*5|1|0.05|ENSG00000133138|chrX:106826105-106826106|-/AAAATGG|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2384338378906 2 460.258382 918.502212 -0.024406 -1.1233E-05 -0.62679 -0.00028848 -0.65119 -0.00029972 460.2580295948752 63.17 0.60687 60.172 59.915 60.522 -2.9975 45 17 3 0 0 0 0.23009 1 12201 12201 47.594 7.3552 1 9406300 44109 3788 29294 29314 43430 43430 0.039700613149989294 SVLDSTAKV 9 Unmodified _SVLDSTAKV_ 0 0 0 TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B;nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;TBC1D8B|p.V302Kfs*5|1|0.05|ENSG00000133138|chrX:106826105-106826106|-/AAAATGG|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2265319824219 2 460.258382 918.502212 0.1291 5.942E-05 -0.61202 -0.00028169 -0.48292 -0.00022227 460.25803518712695 63.684 0.62466 60.269 60.009 60.634 -3.4158 39 17 3 0 0 0 0.11261 1 11920 11920 55.503 7.9084 1 8833000 44110 3788 29294 29314 43431 43431 0.039700613149989294 SVLDSTAKV 9 Unmodified _SVLDSTAKV_ 0 0 0 TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B;nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;TBC1D8B|p.V302Kfs*5|1|0.05|ENSG00000133138|chrX:106826105-106826106|-/AAAATGG|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.226318359375 2 460.258382 918.502212 0.25576 0.00011772 -0.63429 -0.00029194 -0.37853 -0.00017422 460.2580689240068 63.617 0.62047 60.36 60.022 60.643 -3.2567 41 17 3 0 0 0 0.14842 1 11935 11935 55.503 7.9084 1 7056800 44111 3788 29294 29314 43432 43432 0.039700613149989294 SVLEDPVHAV 10 Unmodified _SVLEDPVHAV_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.28271484375 2 533.282389 1064.55022 0.018092 9.6479E-06 0.15838 8.4459E-05 0.17647 9.4107E-05 533.7839308423785 102.88 0.66844 98.698 98.307 98.975 -4.1861 32 18 2 0 0 0 0.12982 3 20239 20166;20189;20239 52.268 28.248 1 2960000 44112 1291 29295 29315 43433;43434;43435 43435 0.02053135235018999 SVLEDPVHAV 10 Unmodified _SVLEDPVHAV_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2825317382812 2 533.282389 1064.55022 0.63683 0.00033961 -0.50249 -0.00026797 0.13434 7.1641E-05 533.2821447010242 103.05 0.59492 98.733 98.431 99.026 -4.3208 27 16 2 0 0 0 0.12982 6 19739 19695;19708;19739;19747;19752;19786 52.268 28.248 1 1513100 44113 1291 29295 29315 43436;43437;43438;43439;43440;43441 43438 0.02053135235018999 SVLEDPVHAV 10 Unmodified _SVLEDPVHAV_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.282958984375 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 102.68 1 98.657 98.157 99.157 -4.0212 0 0 0 0.18733 1 19736 19736 30.637 3.7529 1 44114 1291 29295 29315 43442 43442 0.02053135235018999 SVLEDPVHAV 10 Unmodified _SVLEDPVHAV_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825927734375 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 102.95 1 98.925 98.425 99.425 -4.0212 0 0 0 0.18733 1 19790 19790 30.637 12.49 1 44115 1291 29295 29315 43443 43443 0.02053135235018999 SVLFNNKK 8 Unmodified _SVLFNNKK_ 0 0 0 REV__KBTBD3|p.Q36Lfs*14|1|0.05|ENSG00000182359|chr11:106058992-106058993|-/ATTTGGATAA|frameshift_variant REV__KBTBD3|p.Q36Lfs*14|1|0.05|ENSG00000182359|chr11:106058992-106058993|-/ATTTGGATAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1588439941406 3 317.187032 948.539266 NaN NaN NaN NaN NaN NaN NaN 85.037 1 81.128 80.628 81.628 -3.9093 0 0 0 0.21486 1 16168 16168 3.5965 0 1 + 44116 18779 29296 29316 43444 43444 0.06293777651421806 SVLGLYKGL 9 Unmodified _SVLGLYKGL_ 0 0 0 ENSG00000197119|ENST00000359232|SLC25A29 ENSG00000197119|ENST00000359232|SLC25A29 ENSG00000197119|ENST00000359232|SLC25A29 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1744384765625 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 99.795 1 95.663 95.163 96.163 -4.1326 0 0 0 0.23508 1 19610 19610 1.0715 0 1 44117 7330 29297 29317 43445 43445 0.08807832453999254 SVLGRLDGY 9 Unmodified _SVLGRLDGY_ 0 0 0 REV__KIFC2|p.C347Y|1|0.45|ENSG00000167702|chr8:144468761-144468761|G/A|missense_variant REV__KIFC2|p.C347Y|1|0.45|ENSG00000167702|chr8:144468761-144468761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2635803222656 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 47.847 1 44.897 44.397 45.397 -2.9499 0 0 0 0.19711 1 8747 8747 4.7159 3.5011 1 + 44118 23718 29298 29318 43446 43446 0.023328834091330464 SVLGSLSSV 9 Unmodified _SVLGSLSSV_ 0 0 0 ENST00000502634.1_1_5:20304521-20305535:-|nuORF;ENST00000469163.1_1_22:45574147-45579448:+|nuORF;ENST00000556933.1_1_14:65067322-65068336:-|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENSG00000093000|ENST00000347635|NUP50 ENST00000502634.1_1_5:20304521-20305535:-|nuORF ENST00000502634.1_1_5:20304521-20305535:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2415466308594 2 424.739825 847.465098 0.097198 4.1284E-05 0.1375 5.8401E-05 0.2347 9.9685E-05 424.73984715162476 129.49 0.82396 129.49 129.06 129.88 0 50 23 3 0 0 0 0.027022 5 25535 25535;25582;25595;25625;25627 60.47 23.66 1 9338400 44119 10629 29299 29319 43447;43448;43449;43450;43451 43447 0.03526389769228899 SVLGSLSSV 9 Unmodified _SVLGSLSSV_ 0 0 0 ENST00000502634.1_1_5:20304521-20305535:-|nuORF;ENST00000469163.1_1_22:45574147-45579448:+|nuORF;ENST00000556933.1_1_14:65067322-65068336:-|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENSG00000093000|ENST00000347635|NUP50 ENST00000502634.1_1_5:20304521-20305535:-|nuORF ENST00000502634.1_1_5:20304521-20305535:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2413330078125 2 424.739825 847.465098 -0.15695 -6.6663E-05 0.30078 0.00012775 0.14383 6.109E-05 424.7399133457692 133.94 0.8083 129.3 128.82 129.63 -4.6399 49 22 3 0 0 0 0.011131 2 26425 26376;26425 54.068 36.238 1 11012000 44120 10629 29299 29319 43452;43453 43453 0.03526389769228899 SVLGSLSSV 9 Unmodified _SVLGSLSSV_ 0 0 0 ENST00000502634.1_1_5:20304521-20305535:-|nuORF;ENST00000469163.1_1_22:45574147-45579448:+|nuORF;ENST00000556933.1_1_14:65067322-65068336:-|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENSG00000093000|ENST00000347635|NUP50 ENST00000502634.1_1_5:20304521-20305535:-|nuORF ENST00000502634.1_1_5:20304521-20305535:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2509460449219 2 424.739825 847.465098 0.018209 7.734E-06 0.1754 7.45E-05 0.19361 8.2234E-05 424.7398590238801 134.25 0.75615 129.38 128.96 129.72 -4.8726 38 21 2 0 0 0 0.011131 4 25829 25756;25791;25794;25829 88.904 20.992 1 8467900 44121 10629 29299 29319 43454;43455;43456;43457 43457 0.03526389769228899 SVLGSLSSV 9 Unmodified _SVLGSLSSV_ 0 0 0 ENST00000502634.1_1_5:20304521-20305535:-|nuORF;ENST00000469163.1_1_22:45574147-45579448:+|nuORF;ENST00000556933.1_1_14:65067322-65068336:-|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENSG00000093000|ENST00000347635|NUP50 ENST00000502634.1_1_5:20304521-20305535:-|nuORF ENST00000502634.1_1_5:20304521-20305535:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2413330078125 2 424.739825 847.465098 -0.068996 -2.9305E-05 0.27719 0.00011773 0.20819 8.8427E-05 424.73990243093994 134.21 0.73816 129.39 129.02 129.76 -4.8175 37 20 2 0 0 0 0.037776 5 25782 25782;25832;25836;25879;25896 68.081 22.34 1 6344500 44122 10629 29299 29319 43458;43459;43460;43461;43462 43458 0.03526389769228899 SVLLLLLLLRR 11 Unmodified _SVLLLLLLLRR_ 0 0 0 nc|ENSG00000166557|Q9Y3Q3-2|TMED3;ENSG00000166557|ENST00000299705|TMED3 nc|ENSG00000166557|Q9Y3Q3-2|TMED3 nc|ENSG00000166557|Q9Y3Q3-2|TMED3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 654.958740234375 2 654.958115 1307.90168 NaN NaN NaN NaN NaN NaN NaN 177.1 1 172.23 171.73 172.73 -4.8739 0 0 0 0.22632 1 35242 35242 0.094841 0.094841 1 44123 5732 29300 29320 43463 43463 0.26004216001160785 SVLLVLLLVI 10 Unmodified _SVLLVLLLVI_ 0 0 0 SUSD4|p.P412Qfs*51|2|0.24|ENSG00000143502|chr1:223223458-223223458|G/-|frameshift_variant;nc|ENSG00000143502|Q5VX71-2|SUSD4;ENSG00000143502|ENST00000366878|SUSD4 SUSD4|p.P412Qfs*51|2|0.24|ENSG00000143502|chr1:223223458-223223458|G/-|frameshift_variant SUSD4|p.P412Qfs*51|2|0.24|ENSG00000143502|chr1:223223458-223223458|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2648315429688 2 541.383386 1080.75222 0.025915 1.403E-05 3.1544 0.0017077 3.1803 0.0017217 541.3853366534763 79.039 0.24585 75.234 75.055 75.301 -3.8048 8 6 2 0 0 0 0.91149 1 14967 14967 1.4819 0 1 1468200 44124 4497 29301 29321 43464 43464 0.21507270658548805 SVLQKCSH 8 Unmodified _SVLQKCSH_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;ENST00000490135.6_1_6:152637953-152655276:-|nuORF ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 451.2406005859375 2 451.231645 900.448736 NaN NaN NaN NaN NaN NaN NaN 32.126 1 29.977 29.477 30.477 -2.1483 0 0 0 0.21323 1 5557 5557 14.582 5.2343 1 44125 3655 29302 29322 43465 43465 -0.005470146685070176 SVLSTGVPTV 10 Unmodified _SVLSTGVPTV_ 0 0 0 nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF nc|ENSG00000115806|Q9H8Y8-2|GORASP2 nc|ENSG00000115806|Q9H8Y8-2|GORASP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7655944824219 2 480.274032 958.533512 -0.039729 -1.9081E-05 -0.054104 -2.5985E-05 -0.093833 -4.5066E-05 480.27403874747176 72.874 1.2632 72.874 72.471 73.734 0 130 35 5 0 0 0 0.42569 2 14150 14150;14178 29.082 5.061 1 214700000 44126 2884 29303 29323 43466;43467 43466 0.05258634349104341 SVLTLQEYE 9 Unmodified _SVLTLQEYE_ 0 0 0 ENSG00000170522|ENST00000302274|ELOVL6 ENSG00000170522|ENST00000302274|ELOVL6 ENSG00000170522|ENST00000302274|ELOVL6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2749633789062 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 134.43 1 129.56 129.06 130.06 -4.8726 0 0 0 0.19684 1 25826 25826 0.029283 0 1 44127 6077 29304 29324 43468 43468 -0.0031399072172462184 SVLVCFVSC 9 Unmodified _SVLVCFVSC_ 0 0 0 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7339172363281 2 478.732632 955.45071 NaN NaN NaN NaN NaN NaN NaN 120.66 1 120.66 120.16 121.16 0 0 0 0 0.19687 1 23782 23782 8.1555 7.7473 1 44128 1723 29305 29325 43469 43469 -0.028797219749094438 SVLVGSEVIG 10 Unmodified _SVLVGSEVIG_ 0 0 0 REV__nc|ENSG00000290649|Q8NH63|OR51H1 REV__nc|ENSG00000290649|Q8NH63|OR51H1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77752685546875 2 480.274032 958.533512 0.14242 6.8398E-05 -0.25384 -0.00012191 -0.11143 -5.3515E-05 480.2739507243183 76.293 1.7046 72.659 72.136 73.841 -3.6337 147 48 5 0 0 0 0.51199 1 14529 14529 24.021 1.2843 1 205490000 + 44129 24324 29306 29326 43470 43470 0.05258634349104341 SVLVSVSEV 9 Unmodified _SVLVSVSEV_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2449035644531 2 459.760758 917.506963 0.22343 0.00010272 -0.028812 -1.3246E-05 0.19462 8.9477E-05 459.76068346479735 120.58 0.71201 120.58 120.18 120.89 0 38 19 3 0 0 0 0.095051 1 23789 23789 57.471 13.064 1 3639600 44130 7767 29307 29327 43471 43471 0.04490945457769158 SVLVWLIV 8 Unmodified _SVLVWLIV_ 0 0 0 ENSG00000169860|ENST00000305097|P2RY1 ENSG00000169860|ENST00000305097|P2RY1 ENSG00000169860|ENST00000305097|P2RY1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1651306152344 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 156.46 1 151.19 150.69 151.69 -5.2712 0 0 0 0.21486 1 30345 30345 0.40072 0 1 44131 6013 29308 29328 43472 43472 0.1126532432199383 SVLVWLIV 8 Unmodified _SVLVWLIV_ 0 0 0 ENSG00000169860|ENST00000305097|P2RY1 ENSG00000169860|ENST00000305097|P2RY1 ENSG00000169860|ENST00000305097|P2RY1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.230224609375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 158.85 1 153.58 153.08 154.08 -5.2712 0 0 0 0.21486 1 30823 30823 0.40072 0 1 44132 6013 29308 29328 43473 43473 0.1126532432199383 SVMDQEMRV 9 Unmodified _SVMDQEMRV_ 0 0 0 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1;nc|ENSG00000002822|Q9Y6D9-4|MAD1L1;ENSG00000002822|ENST00000265854|MAD1L1 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.783935546875 2 547.752084 1093.48961 NaN NaN NaN NaN NaN NaN NaN 80.327 1 80.327 79.827 80.827 0 0 0 0 0.21434 1 15638 15638 19.362 7.7216 1 44133 964 29309 29329 43474 43474 -0.05339041411184553 SVMSSCCC 8 Unmodified _SVMSSCCC_ 0 0 0 REV__nc|ENSG00000128253|O75678-3|RFPL2 REV__nc|ENSG00000128253|O75678-3|RFPL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 410.12957763671875 2 410.128827 818.243102 NaN NaN NaN NaN NaN NaN NaN 141.72 1 141.72 141.22 142.22 0 0 0 0 0.21486 1 28247 28247 0.69038 0.69038 1 + 44134 15916 29310 29330 43475 43475 -0.17328995506113642 SVNEEEQEE 9 Unmodified _SVNEEEQEE_ 0 0 0 ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10 ENSG00000103194|ENST00000219473|USP10 ENSG00000103194|ENST00000219473|USP10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 546.7759399414062 2 546.720015 1091.42548 NaN NaN NaN NaN NaN NaN NaN 18.181 1 16.909 16.409 17.409 -1.2722 0 0 0 0.23508 1 2715 2715 3.9444 0.66309 1 44135 2172 29311 29331 43476 43476 -0.11657826762780132 SVNERLVY 8 Unmodified _SVNERLVY_ 0 0 0 nc|ENSG00000141391|Q96N28-2|PRELID3A;ENSG00000141391|ENST00000440960|PRELID3A nc|ENSG00000141391|Q96N28-2|PRELID3A nc|ENSG00000141391|Q96N28-2|PRELID3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.275634765625 2 490.263999 978.513445 0.0073845 3.6203E-06 0.13078 6.4117E-05 0.13816 6.7737E-05 490.264027526858 56.438 1.1201 56.438 55.973 57.093 0 97 31 4 0 0 0 0.71876 1 10903 10903 11.64 1.5664 1 20526000 44136 4358 29312 29332 43477 43477 0.023328834091330464 SVPAWWAAPP 10 Unmodified _SVPAWWAAPP_ 0 0 0 KCP|p.E906Kfs*119|1|0.14|ENSG00000135253|chr7:128885242-128885242|G/-|frameshift_variant;KCP|p.D914Tfs*111|1|0.3|ENSG00000135253|chr7:128885218-128885218|G/-|frameshift_variant;KCP|p.Q841Ifs*185|1|0.15|ENSG00000135253|chr7:128886727-128886728|-/TC|frameshift_variant KCP|p.E906Kfs*119|1|0.14|ENSG00000135253|chr7:128885242-128885242|G/-|frameshift_variant KCP|p.E906Kfs*119|1|0.14|ENSG00000135253|chr7:128885242-128885242|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2775268554688 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 58.258 1 55.348 54.848 55.848 -2.9105 0 0 0 0.22588 1 11188 11188 10.074 0.72649 1 44137 11984 29313 29333 43478 43478 0.0022177765142714634 SVPESPEFVRV 11 Unmodified _SVPESPEFVRV_ 0 0 0 ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7740478515625 2 623.327328 1244.6401 1.1219 0.00069933 -1.0381 -0.00064709 0.083808 5.224E-05 623.3267788033454 117.22 0.76785 112.74 112.46 113.23 -4.486 29 21 2 0 0 0 0.96034 1 23072 23072 8.9762 1.3673 1 1160000 44138 1662 29314 29334 43479 43479 0.027567648436161107 SVPLVLLLVL 10 Unmodified _SVPLVLLLVL_ 0 0 0 nc|ENSG00000197487|Q9UBC7-2|GALP;ENSG00000197487|ENST00000357330|GALP nc|ENSG00000197487|Q9UBC7-2|GALP nc|ENSG00000197487|Q9UBC7-2|GALP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 533.367736 1064.72092 NaN NaN NaN NaN NaN NaN NaN 156.43 1 151.14 150.64 151.64 -5.2854 0 0 0 0.22588 1 30347 30347 3.5965 0 1 44139 7371 29315 29335 43480 43480 0.19114697624468135 SVPPAPPP 8 Unmodified _SVPPAPPP_ 0 0 0 ENSG00000167771|ENST00000301459|RCOR2 ENSG00000167771|ENST00000301459|RCOR2 ENSG00000167771|ENST00000301459|RCOR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2132873535156 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 17.337 1 17.337 16.837 17.837 0 0 0 0 0.21452 1 2741 2741 13.508 2.3934 1 44140 5848 29316 29336 43481 43481 0.02215056777231439 SVPPASCT 8 Unmodified _SVPPASCT_ 0 0 0 REV__PTPN5|p.E272Dfs*40|1|0.08|ENSG00000110786|chr11:18740702-18740703|-/CCATG|frameshift_variant REV__PTPN5|p.E272Dfs*40|1|0.08|ENSG00000110786|chr11:18740702-18740703|-/CCATG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21807861328125 2 381.178546 760.34254 NaN NaN NaN NaN NaN NaN NaN 50.879 1 50.879 50.379 51.379 0 0 0 0 0.2396 1 9641 9641 0.12286 0 1 + 44141 24529 29317 29337 43482 43482 -0.04721770233845746 SVPRMTPQ 8 Unmodified _SVPRMTPQ_ 0 0 0 ENST00000338272.8_1_1:109637211-109637328:+|nuORF ENST00000338272.8_1_1:109637211-109637328:+|nuORF ENST00000338272.8_1_1:109637211-109637328:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23870849609375 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 59.891 1 59.891 59.391 60.391 0 0 0 0 0.21486 1 11477 11477 13.042 0.51092 1 44142 8830 29318 29338 43483 43483 0.003732718485366604 SVPSVSTTSV 10 Unmodified _SVPSVSTTSV_ 0 0 0 ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7746276855469 2 482.253297 962.492041 0.077236 3.7247E-05 -0.10326 -4.9798E-05 -0.026025 -1.2551E-05 482.2531658587811 36.87 0.76787 36.87 36.525 37.293 0 30 21 2 0 0 0 0.78938 1 6818 6818 16.149 3.1066 1 840730 44143 7265 29319 29339 43484 43484 0.009294535897765854 SVPSVSTTSV 10 Unmodified _SVPSVSTTSV_ 0 0 0 ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7746276855469 2 482.253297 962.492041 0.059066 2.8485E-05 0.2689 0.00012968 0.32797 0.00015816 482.25325276055975 39.144 0.76838 36.739 36.441 37.21 -2.4049 35 21 2 0 0 0 0.82238 1 6993 6993 17.113 2.2746 1 1226800 44144 7265 29319 29339 43485 43485 0.009294535897765854 SVPVFPAHS 9 Unmodified _SVPVFPAHS_ 0 0 0 ENSG00000239620|ENST00000465482|PRR20G ENSG00000239620|ENST00000465482|PRR20G ENSG00000239620|ENST00000465482|PRR20G MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1678771972656 3 314.167749 939.481417 NaN NaN NaN NaN NaN NaN NaN 86.822 1 83.093 82.593 83.593 -3.7289 0 0 0 0.23508 1 16607 16607 4.897 1.6157 1 44145 7835 29320 29340 43486 43486 0.009255157259985936 SVQKLPICA 9 Unmodified _SVQKLPICA_ 0 0 0 ENSG00000109445|ENST00000262990|ZNF330 ENSG00000109445|ENST00000262990|ZNF330 ENSG00000109445|ENST00000262990|ZNF330 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.1855163574219 3 320.184522 957.531738 NaN NaN NaN NaN NaN NaN NaN 85.906 1 82.177 81.677 82.677 -3.7289 0 0 0 0.23508 1 16420 16420 1.1933 0.12188 1 44146 2528 29321 29341 43487 43487 0.05127302059486283 SVQTRHES 8 Unmodified _SVQTRHES_ 0 0 0 REV__nc|ENSG00000183765|O96017-11|CHEK2 REV__nc|ENSG00000183765|O96017-11|CHEK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1437683105469 3 315.157912 942.451907 NaN NaN NaN NaN NaN NaN NaN 178.18 1 173.27 172.77 173.77 -4.9088 0 0 0 0.21486 1 35542 35542 3.2813 0 1 + 44147 18860 29322 29342 43488 43488 -0.02162048290142593 SVQTRHES 8 Unmodified _SVQTRHES_ 0 0 0 REV__nc|ENSG00000183765|O96017-11|CHEK2 REV__nc|ENSG00000183765|O96017-11|CHEK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.12542724609375 3 315.157912 942.451907 NaN NaN NaN NaN NaN NaN NaN 178.27 1 173.36 172.86 173.86 -4.9088 0 0 0 0.21486 1 35560 35560 3.2813 0.78282 1 + 44148 18860 29322 29342 43489 43489 -0.02162048290142593 SVRAPRAPGPA 11 Unmodified _SVRAPRAPGPA_ 0 0 0 REV__ENSG00000139865|ENST00000553443|TTC6 REV__ENSG00000139865|ENST00000553443|TTC6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21002197265625 3 360.208718 1077.60433 NaN NaN NaN NaN NaN NaN NaN 87.992 1 84.242 83.742 84.742 -3.7501 0 0 0 0.22632 1 16838 16838 3.0723 0.57378 1 + 44149 16547 29323 29343 43490 43490 0.0686277217728275 SVRAVREGKQ 10 Unmodified _SVRAVREGKQ_ 0 0 0 tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1 tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1 tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 565.254638671875 2 565.325454 1128.63635 NaN NaN NaN NaN NaN NaN NaN 164.68 1 159.63 159.13 160.13 -5.0446 0 0 0 0.22588 1 32134 32134 8.1555 0.54658 1 44150 26267 29324 29344 43491 43491 0.0771813986041252 SVRIAERVR 9 Unmodified _SVRIAERVR_ 0 0 0 REV__SPAM1|p.K450Rfs*3|1|0.35|ENSG00000106304|chr7:123959786-123959787|AA/-|frameshift_variant REV__SPAM1|p.K450Rfs*3|1|0.35|ENSG00000106304|chr7:123959786-123959787|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7818603515625 2 543.330539 1084.64652 0.33718 0.0001832 -1.1327 -0.00061542 -0.7955 -0.00043222 543.8317270605911 139.73 0.16936 139.73 139.64 139.81 0 5 4 2 0 0 0 0.5428 1 27784 27784 4.897 0 1 2373600 + 44151 15039 29325 29345 43492 43492 0.10758747585646233 SVRRIRDMQWH 11 Unmodified _SVRRIRDMQWH_ 0 0 0 ENSG00000244752|ENST00000398215|CRYBB2 ENSG00000244752|ENST00000398215|CRYBB2 ENSG00000244752|ENST00000398215|CRYBB2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.38671875 2 742.388593 1482.76263 NaN NaN NaN NaN NaN NaN NaN 107.22 1 107.22 106.72 107.72 0 0 0 0 0.23634 1 21081 21081 3.2813 0 1 44152 7886 29326 29346 43493 43493 0.0405632309405064 SVRRRYRRWRM 11 Unmodified _SVRRRYRRWRM_ 0 0 0 ENST00000488071.1_1_11:64494766-64496427:-|nuORF;ENST00000421556.5_1_11:64494482-64496427:-|nuORF;ENST00000464324.5_1_11:64494482-64496427:-|nuORF ENST00000488071.1_1_11:64494766-64496427:-|nuORF ENST00000488071.1_1_11:64494766-64496427:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2738037109375 3 541.307543 1620.9008 NaN NaN NaN NaN NaN NaN NaN 157.8 1 152.53 152.03 153.03 -5.2712 0 0 0 0.22632 1 30611 30611 0.172 0.172 1 44153 9670 29327 29347 43494 43494 0.11518491133142561 SVRVTKWFQ 9 Unmodified _SVRVTKWFQ_ 0 0 0 REV__ENST00000369713.9_1_10:106019395-106019437:+|nuORF REV__ENST00000369713.9_1_10:106019395-106019437:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32763671875 2 575.822015 1149.62948 0.28096 0.00016179 4.0015 0.0023042 4.2825 0.002466 576.3251663250642 119.97 0.59245 115.45 115.26 115.85 -4.5221 18 16 2 0 0 0 0.6329 1 23644 23644 10.824 1.4408 1 2689800 + 44154 20969 29328 29348 43495 43495 0.060648269798548426 SVRVTKWFQ 9 Unmodified _SVRVTKWFQ_ 0 0 0 REV__ENST00000369713.9_1_10:106019395-106019437:+|nuORF REV__ENST00000369713.9_1_10:106019395-106019437:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 575.822015 1149.62948 0.28096 0.00016179 4.0015 0.0023042 4.2825 0.002466 576.3251663250642 119.97 0.59245 115.45 115.26 115.85 -4.5221 0 0 NaN 10.824 18 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2689800 + 44155 20969 29328 29348 0.060648269798548426 SVSCRKHYS 9 Unmodified _SVSCRKHYS_ 0 0 0 LGSN|p.R368H|1|0.12|ENSG00000146166|chr6:63280448-63280448|C/T|missense_variant LGSN|p.R368H|1|0.12|ENSG00000146166|chr6:63280448-63280448|C/T|missense_variant LGSN|p.R368H|1|0.12|ENSG00000146166|chr6:63280448-63280448|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2835083007812 2 533.758558 1065.50256 NaN NaN NaN NaN NaN NaN NaN 85.858 1 81.907 81.407 82.407 -3.9503 0 0 0 0.22621 1 16336 16336 15.847 3.3156 1 44156 12074 29329 29349 43496 43496 -0.02756842236817647 SVSEEDVSSR 10 Unmodified _SVSEEDVSSR_ 0 0 0 PAWR|p.K270Rfs*10|1|0.42|ENSG00000177425|chr12:79596533-79596533|T/-|frameshift_variant;ENSG00000177425|ENST00000328827|PAWR PAWR|p.K270Rfs*10|1|0.42|ENSG00000177425|chr12:79596533-79596533|T/-|frameshift_variant PAWR|p.K270Rfs*10|1|0.42|ENSG00000177425|chr12:79596533-79596533|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.771728515625 2 547.75165 1093.48875 NaN NaN NaN NaN NaN NaN NaN 84.429 1 80.519 80.019 81.019 -3.9093 0 0 0 0.22559 1 16047 16047 17.113 3.2068 1 44157 6510 29330 29350 43497 43497 -0.05425841254873376 SVSGRHSKA 9 Unmodified _SVSGRHSKA_ 0 0 0 nc|ENSG00000288591|Q9Y2I9-3|TBC1D30;nc|ENSG00000288591|Q9Y2I9-4|TBC1D30;ENSG00000111490|ENST00000539867|TBC1D30;nc|ENSG00000288591|Q9Y2I9|TBC1D30 nc|ENSG00000288591|Q9Y2I9-3|TBC1D30 nc|ENSG00000288591|Q9Y2I9-3|TBC1D30 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700439453125 3 310.170152 927.488627 NaN NaN NaN NaN NaN NaN NaN 88.892 1 88.892 88.392 89.392 0 0 0 0 0.23508 1 17352 17352 1.0715 0.61312 1 44158 2624 29331 29351 43498 43498 0.021982483264196162 SVSGSAARPP 10 Unmodified _SVSGSAARPP_ 0 0 0 ENST00000392607.7_2_10:134901465-134902304:+|nuORF ENST00000392607.7_2_10:134901465-134902304:+|nuORF ENST00000392607.7_2_10:134901465-134902304:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1695251464844 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 62.439 1 62.439 61.939 62.939 0 0 0 0 2.8426 1 11991 11991 0.043787 0 1 44159 9376 29332 29352 43499 43499 0.010754262322734576 SVSGSAARPP 10 Unmodified _SVSGSAARPP_ 0 0 0 ENST00000392607.7_2_10:134901465-134902304:+|nuORF ENST00000392607.7_2_10:134901465-134902304:+|nuORF ENST00000392607.7_2_10:134901465-134902304:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649169921875 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 98.532 1 98.532 98.032 99.032 0 0 0 0 2.8426 1 19315 19315 0.043787 0 1 44160 9376 29332 29352 43500 43500 0.010754262322734576 SVSIGYLLVK 10 Unmodified _SVSIGYLLVK_ 0 0 0 ENSG00000134871|ENST00000360467|COL4A2 ENSG00000134871|ENST00000360467|COL4A2 ENSG00000134871|ENST00000360467|COL4A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2077941894531 3 360.221742 1077.6434 NaN NaN NaN NaN NaN NaN NaN 39.511 1 36.962 36.462 37.462 -2.5491 0 0 0 2.8426 1 7344 7344 0.013265 0 1 44161 3878 29333 29353 43501 43501 0.10768059688280118 SVSLGGAPNR 10 Unmodified _SVSLGGAPNR_ 0 0 0 REV__SOWAHB|p.H581Pfs*14|1|0.25|ENSG00000186212|chr4:76896108-76896109|-/GG|frameshift_variant REV__SOWAHB|p.H581Pfs*14|1|0.25|ENSG00000186212|chr4:76896108-76896109|-/GG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.2664489746094 3 319.841924 956.503943 NaN NaN NaN NaN NaN NaN NaN 26.735 1 24.953 24.453 25.453 -1.7821 0 0 0 0.22588 1 4729 4729 1.9064 0.062138 1 + 44162 19022 29334 29354 43502 43502 0.023951151236133228 SVSLISKEV 9 Unmodified _SVSLISKEV_ 0 0 0 ENSG00000214842|ENST00000399080|RAD51AP2 ENSG00000214842|ENST00000399080|RAD51AP2 ENSG00000214842|ENST00000399080|RAD51AP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7835693359375 2 481.281857 960.549162 -0.16922 -8.1442E-05 0.24163 0.00011629 0.07241 3.485E-05 481.28187481887477 82.966 0.55395 79.267 78.933 79.487 -3.6985 30 15 3 0 0 0 0.58804 1 15832 15832 13.906 0 1 2588800 44163 7734 29335 29355 43503 43503 0.06730920866141332 SVSVQGIIIY 10 Unmodified _SVSVQGIIIY_ 0 0 0 ENSG00000169100|ENST00000381401|SLC25A6 ENSG00000169100|ENST00000381401|SLC25A6 ENSG00000169100|ENST00000381401|SLC25A6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20989990234375 3 360.209613 1077.60701 NaN NaN NaN NaN NaN NaN NaN 84.379 1 84.379 83.879 84.879 0 0 0 0 0.22588 1 16456 16456 5.4027 0.5057 1 44164 5964 29336 29356 43504 43504 0.07131182791590618 SVSWTGKPV 9 Unmodified _SVSWTGKPV_ 0 0 0 nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L nc|ENSG00000104885|Q8TEK3-1|DOT1L nc|ENSG00000104885|Q8TEK3-1|DOT1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2425842285156 2 480.761092 959.507631 0.014086 6.7719E-06 -0.098864 -4.753E-05 -0.084778 -4.0758E-05 480.7612531697523 66.647 0.34702 63.538 63.271 63.618 -3.1086 14 9 2 0 0 0 0.57447 1 12913 12913 14.838 1.3304 1 702030 44165 12268 29337 29357 43505 43505 0.02625784897475114 SVSWWLWGTEK 11 Unmodified _SVSWWLWGTEK_ 0 0 0 ENST00000272418.6_1_2:95766602-95770453:-|nuORF ENST00000272418.6_1_2:95766602-95770453:-|nuORF ENST00000272418.6_1_2:95766602-95770453:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23114013671875 3 460.231189 1377.67174 NaN NaN NaN NaN NaN NaN NaN 65.765 1 65.765 65.265 66.265 0 0 0 0 0.22632 1 12688 12688 0.172 0 1 44166 8408 29338 29358 43506 43506 -0.0019924240241380176 SVSWWLWGTEK 11 Unmodified _SVSWWLWGTEK_ 0 0 0 ENST00000272418.6_1_2:95766602-95770453:-|nuORF ENST00000272418.6_1_2:95766602-95770453:-|nuORF ENST00000272418.6_1_2:95766602-95770453:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2315368652344 3 460.231189 1377.67174 NaN NaN NaN NaN NaN NaN NaN 66.07 1 66.07 65.57 66.57 0 0 0 0 0.22632 1 12754 12754 0.172 0.14579 1 44167 8408 29338 29358 43507 43507 -0.0019924240241380176 SVSWWLWGTEK 11 Unmodified _SVSWWLWGTEK_ 0 0 0 ENST00000272418.6_1_2:95766602-95770453:-|nuORF ENST00000272418.6_1_2:95766602-95770453:-|nuORF ENST00000272418.6_1_2:95766602-95770453:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23138427734375 3 460.231189 1377.67174 NaN NaN NaN NaN NaN NaN NaN 84.943 1 81.033 80.533 81.533 -3.9093 0 0 0 0.22632 1 16149 16149 0.65807 0.48607 1 44168 8408 29338 29358 43508 43508 -0.0019924240241380176 SVSYTIRGP 9 Unmodified _SVSYTIRGP_ 0 0 0 nc|ENSG00000179526|Q9H0F6-2|SHARPIN;ENSG00000179526|ENST00000398712|SHARPIN nc|ENSG00000179526|Q9H0F6-2|SHARPIN nc|ENSG00000179526|Q9H0F6-2|SHARPIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26409912109375 2 490.263999 978.513445 0.064146 3.1448E-05 0.10466 5.1312E-05 0.16881 8.2761E-05 490.2640316435626 59.279 1.7152 56.368 55.784 57.5 -2.9105 129 48 4 0 0 0 0.38188 1 11390 11390 26.884 0 1 42586000 44169 6632 29339 29359 43509 43509 0.023328834091557837 SVSYTIRGP 9 Unmodified _SVSYTIRGP_ 0 0 0 nc|ENSG00000179526|Q9H0F6-2|SHARPIN;ENSG00000179526|ENST00000398712|SHARPIN nc|ENSG00000179526|Q9H0F6-2|SHARPIN nc|ENSG00000179526|Q9H0F6-2|SHARPIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26409912109375 2 490.263999 978.513445 0.17497 8.5784E-05 0.35871 0.00017586 0.53368 0.00026164 490.26396477223466 59.697 1.4825 56.384 55.742 57.224 -3.3139 148 41 6 0 0 0 0.38188 1 11089 11089 26.884 0 1 37594000 44170 6632 29339 29359 43510 43510 0.023328834091557837 SVTAELPDV 9 Unmodified _SVTAELPDV_ 0 0 0 REV__ADGRF5|p.Q619Tfs*21|1|0.29|ENSG00000069122|chr6:46865177-46865178|-/T|frameshift_variant REV__ADGRF5|p.Q619Tfs*21|1|0.29|ENSG00000069122|chr6:46865177-46865178|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2369079589844 2 465.742565 929.470577 0.15824 7.37E-05 0.91998 0.00042847 1.0782 0.00050217 465.7430005049155 29.047 0.45294 29.047 28.81 29.263 0 24 12 3 0 0 0 0.80521 1 5131 5131 15.847 3.3156 1 3125300 + 44171 12963 29340 29360 43511 43511 0.003020685610522378 SVTGHNCMI 9 Unmodified _SVTGHNCMI_ 0 0 0 REV__ENST00000485560.5_3_10:38146171-38146261:-|nuORF REV__ENST00000485560.5_3_10:38146171-38146261:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7889099121094 2 481.215137 960.415722 -0.19046 -9.165E-05 -0.014821 -7.1321E-06 -0.20528 -9.8782E-05 481.21516884004535 53.859 0.51773 50.976 50.632 51.15 -2.8837 25 14 3 0 0 0 0.72864 1 10236 10236 16.942 2.104 1 3862100 + 44172 22223 29341 29361 43512 43512 -0.06606964782861269 SVTGYDGNWFV 11 Unmodified _SVTGYDGNWFV_ 0 0 0 nc|ENSG00000177707|Q9NQS3-3|NECTIN3;nc|ENSG00000177707|Q9NQS3-2|NECTIN3;ENSG00000177707|ENST00000485303|NECTIN3 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7807006835938 2 622.782753 1243.55095 NaN NaN NaN NaN NaN NaN NaN 117.2 1 112.84 112.34 113.34 -4.3585 0 0 0 0.22943 1 22559 22559 8.7454 1.4562 1 44173 12484 29342 29362 43513 43513 -0.061080701159198725 SVTHKPIH 8 Unmodified _SVTHKPIH_ 0 0 0 REV__nc|ENSG00000095637|Q9BX66-12|SORBS1 REV__nc|ENSG00000095637|Q9BX66-12|SORBS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2338562011719 2 459.761426 917.5083 NaN NaN NaN NaN NaN NaN NaN 120.97 1 120.97 120.47 121.47 0 0 0 0 0.22934 1 23845 23845 0.063987 0 1 + 44174 23965 29343 29363 43514 43514 0.046246243371683704 SVTMYMTEQL 10 Unmodified _SVTMYMTEQL_ 0 0 0 REV__nc|ENSG00000134057|P14635-2|CCNB1 REV__nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2942504882812 2 601.775225 1201.5359 0.49765 0.00029947 -4.2905 -0.0025819 -3.7929 -0.0022825 602.2761831784995 153.2 0.10309 147.93 147.88 147.98 -5.2669 4 2 2 0 0 0 0.59928 1 29690 29690 19.257 2.1441 1 1366200 + 44175 16191 29344 29364 43515 43515 -0.05681021299756139 SVTPDEETY 9 Unmodified _SVTPDEETY_ 0 0 0 GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1040.4429931640625 1 1040.44186 1039.43459 0.045483 4.7323E-05 0.1237 0.0001287 0.16918 0.00017602 1040.4419084833805 51.842 0.5487 48.79 48.589 49.138 -3.0517 21 15 2 0 0 0 0.25702 1 9554 9554 34.102 5.6156 1 656340 44176 2443 29345 29365 43516 43516 -0.08355433406472912 SVTPRKEY 8 Unmodified _SVTPRKEY_ 0 0 0 REV__MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;REV__MYO3A|p.N727Kfs*9|1|0.22|ENSG00000095777|chr10:26128448-26128449|-/A|frameshift_variant REV__MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.263916015625 2 490.263999 978.513445 0.0073845 3.6203E-06 0.13078 6.4117E-05 0.13816 6.7737E-05 490.264027526858 56.438 1.1201 56.438 55.973 57.093 0 97 31 4 0 0 0 0.69713 1 10866 10866 14.838 0 1 20526000 + 44177 14615;23903 29346 29366 43517 43517 0.023328834091330464 SVTTSYNLA 9 Unmodified _SVTTSYNLA_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7331237792969 2 478.24019 954.465826 0.74927 0.00035833 -0.98535 -0.00047123 -0.23608 -0.0001129 478.23973074039884 28.678 0.65169 26.722 26.468 27.12 -1.9561 67 18 7 0 0 0 0.52027 1 5169 5169 19.257 0 1 5845800 44178 7480 29347 29367 43518 43518 -0.013228155817159859 SVTVSLTGAK 10 Unmodified _SVTVSLTGAK_ 0 0 0 ENST00000607140.1_1_2:10260940-10261045:+|nuORF ENST00000607140.1_1_2:10260940-10261045:+|nuORF ENST00000607140.1_1_2:10260940-10261045:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7810974121094 2 481.779482 961.544411 NaN NaN NaN NaN NaN NaN NaN 54.58 1 51.442 50.942 51.942 -3.1377 0 0 0 0.21574 1 10105 10105 25.399 2.663 1 44179 11755 29348 29368 43519 43519 0.06210036723371104 SVVDSFTVS 9 Unmodified _SVVDSFTVS_ 0 0 0 REV__ENSG00000064300|ENST00000172229|NGFR REV__ENSG00000064300|ENST00000172229|NGFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.1598815917969 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 87.024 1 83.297 82.797 83.797 -3.727 0 0 0 0.23508 1 17014 17014 4.5289 0.93237 1 + 44180 14165 29349 29369 43520 43520 -0.017222179559894357 SVVENGVTIG 10 Unmodified _SVVENGVTIG_ 0 0 0 tr|U7T3S4|U7T3S4_FUSNUBifunctionalproteinGlmUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmUPE=3SV=1 tr|U7T3S4|U7T3S4_FUSNUBifunctionalproteinGlmUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmUPE=3SV=1 tr|U7T3S4|U7T3S4_FUSNUBifunctionalproteinGlmUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmUPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2662658691406 2 487.761289 973.508025 0.33795 0.00016484 -0.19277 -9.4026E-05 0.14518 7.0813E-05 487.76202154045313 40.55 3.361 40.55 40.208 43.569 0 290 95 6 0 0 0 0.4942 1 7582 7582 24.991 2.2547 1 3347699999.9999995 44181 26417 29350 29370 43521 43521 0.02021159826699659 SVVFDFRQP 9 Unmodified _SVVFDFRQP_ 0 0 0 REV__ENSG00000164010|ENST00000372517|ERMAP REV__ENSG00000164010|ENST00000372517|ERMAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7697143554688 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 80.486 1 80.486 79.986 80.986 0 0 0 0 0.23508 1 15670 15670 8.7454 0.58988 1 + 44182 17635 29351 29371 43522 43522 0.012608588175226032 SVWFKQYIYVY 11 Unmodified _SVWFKQYIYVY_ 0 0 0 ENST00000446265.3_1:149648157-149648721:+|nuORF;nc|ENSG00000291158|P0C866|LINC00869;ENST00000456826.2_1_1:149262279-149263299:+|nuORF ENST00000446265.3_1:149648157-149648721:+|nuORF ENST00000446265.3_1:149648157-149648721:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 499.28143310546875 3 499.258856 1494.75474 NaN NaN NaN NaN NaN NaN NaN 158.83 1 153.56 153.06 154.06 -5.2712 0 0 0 0.22632 1 30818 30818 0.11104 0.067254 1 44183 9943 29352 29372 43523 43523 0.027150743255560883 SVWIDFYI 8 Unmodified _SVWIDFYI_ 0 0 0 REV__ENSG00000115486|ENST00000233838|GGCX REV__ENSG00000115486|ENST00000233838|GGCX MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2665405273438 2 521.765843 1041.51713 0.49639 0.000259 -1.4108 -0.00073611 -0.91441 -0.00047711 521.765052332357 104.95 0.62468 104.95 104.62 105.24 0 34 17 3 0 0 0 0.64227 1 20655 20655 19.439 2.3261 1 2469900 + 44184 15433 29353 29373 43524 43524 -0.0019644681699446664 SVWQALCI 8 Unmodified _SVWQALCI_ 0 0 0 REV__ENST00000419179.5_1_7:87838740-87846454:-|nuORF REV__ENST00000419179.5_1_7:87838740-87846454:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.238525390625 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 63.064 1 59.807 59.307 60.307 -3.2567 0 0 0 0.21171 1 11832 11832 15.847 0.078963 1 + 44185 21495 29354 29374 43525 43525 0.0008305747961685483 SVWSPTRS 8 Unmodified _SVWSPTRS_ 0 0 0 REV__ENST00000567385.5_1_16:48265837-48278487:-|nuORF REV__ENST00000567385.5_1_16:48265837-48278487:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2358093261719 2 460.235242 918.45593 -0.16976 -7.8128E-05 0.73492 0.00033824 0.56516 0.00026011 460.2354332241904 48.34 0.49319 45.471 45.236 45.729 -2.869 21 13 2 0 0 0 8448 1 9118 9118 0.62683 0 1 1098500 + 44186 23128 29355 29375 43526 43526 -0.006559587964261482 SVYDKNNLL 9 Unmodified _SVYDKNNLL_ 0 0 0 ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA ENST00000477618.1_1_9:74817496-74842957:+|nuORF ENST00000477618.1_1_9:74817496-74842957:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.28466796875 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 85.66 1 81.995 81.495 82.495 -3.6641 0 0 0 0.13259 1 16745 16745 32.786 5.1569 1 44187 3060 29356 29376 43527 43527 0.020531352350417365 SVYTQIWRV 9 Unmodified _SVYTQIWRV_ 0 0 0 ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR ENST00000577161.5_1_17:78519375-78883449:+|nuORF ENST00000577161.5_1_17:78519375-78883449:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3276977539062 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 149.81 1 145.08 144.58 145.58 -4.7323 0 0 0 0.17061 1 29749 29749 27.629 9.4825 1 44188 4384 29357 29377 43528 43528 0.0442112074290435 SVYTQIWRV 9 Unmodified _SVYTQIWRV_ 0 0 0 ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR ENST00000577161.5_1_17:78519375-78883449:+|nuORF ENST00000577161.5_1_17:78519375-78883449:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3169555664062 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 149.93 1 145.19 144.69 145.69 -4.7323 0 0 0 0.20294 1 29774 29774 22.736 8.8302 1 44189 4384 29357 29377 43529 43529 0.0442112074290435 SWAAWPAWTQ 10 Unmodified _SWAAWPAWTQ_ 0 0 0 CLEC11A|p.D63Mfs*77|1|0.09|ENSG00000105472|chr19:50723939-50723939|G/-|frameshift_variant CLEC11A|p.D63Mfs*77|1|0.09|ENSG00000105472|chr19:50723939-50723939|G/-|frameshift_variant CLEC11A|p.D63Mfs*77|1|0.09|ENSG00000105472|chr19:50723939-50723939|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.294921875 2 602.282723 1202.55089 NaN NaN NaN NaN NaN NaN NaN 78.893 1 75.217 74.717 75.717 -3.676 0 0 0 2.8426 1 15028 15028 0.043787 0 1 44190 575 29358 29378 43530 43530 -0.04228025325255658 SWEEERLF 8 Unmodified _SWEEERLF_ 0 0 0 AKNA|p.K380Sfs*30|1|0.3|ENSG00000106948|chr9:114376670-114376670|G/-|frameshift_variant;nc|ENSG00000106948|Q7Z591-6|AKNA;nc|ENSG00000106948|Q7Z591-3|AKNA;ENSG00000106948|ENST00000374088|AKNA AKNA|p.K380Sfs*30|1|0.3|ENSG00000106948|chr9:114376670-114376670|G/-|frameshift_variant AKNA|p.K380Sfs*30|1|0.3|ENSG00000106948|chr9:114376670-114376670|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77490234375 2 548.258914 1094.50327 0.34545 0.0001894 -0.41243 -0.00022612 -0.066978 -3.6721E-05 548.7606367618207 157.78 0.17517 152.99 152.91 153.08 -4.7885 5 4 2 0 0 0 0.89687 1 31390 31390 3.2813 0.78282 1 710840 44191 112 29359 29379 43531 43531 -0.0401972431611739 SWHIDSAN 8 Unmodified _SWHIDSAN_ 0 0 0 REV__nc|ENSG00000164520|Q8TD07-5|RAET1E REV__nc|ENSG00000164520|Q8TD07-5|RAET1E MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2480163574219 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 78.627 1 78.627 78.127 79.127 0 0 0 0 0.21486 1 15301 15301 7.9102 0.62092 1 + 44192 17689 29360 29380 43532 43532 -0.06317122210202797 SWPIPEPEWPA 11 Unmodified _SWPIPEPEWPA_ 0 0 0 ENSG00000181215|ENST00000531445|C4orf50 ENSG00000181215|ENST00000531445|C4orf50 ENSG00000181215|ENST00000531445|C4orf50 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.216064453125 3 436.880156 1307.61864 -0.15668 -6.845E-05 1.6872 0.00073709 1.5305 0.00066864 436.8797931674178 83.981 0.20158 80.373 80.288 80.489 -3.6079 6 5 2 0 0 0 0.60461 1 16421 16421 17.863 4.9906 1 648720 44193 6714 29361 29381 43533 43533 -0.022866201851002188 SWRALRFWYKR 11 Unmodified _SWRALRFWYKR_ 0 0 0 ENST00000527483.5_1_10:127395624-127396187:-|nuORF ENST00000527483.5_1_10:127395624-127396187:-|nuORF ENST00000527483.5_1_10:127395624-127396187:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4029541015625 2 784.933494 1567.85244 NaN NaN NaN NaN NaN NaN NaN 173.27 1 173.27 172.77 173.77 0 0 0 0 0.23698 1 35818 35818 1.1933 0 1 44194 10926 29362 29382 43534 43534 0.09122320764913638 SWREPYVR 8 Unmodified _SWREPYVR_ 0 0 0 REV__NRP2|p.R688Vfs*6|1|0.02|ENSG00000118257|chr2:205763690-205763691|-/GTAT|frameshift_variant REV__NRP2|p.R688Vfs*6|1|0.02|ENSG00000118257|chr2:205763690-205763691|-/GTAT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.78515625 2 546.78289 1091.55123 0.18861 0.00010313 0.37596 0.00020557 0.56456 0.00030869 546.7829102287636 86.753 0.80914 83.024 82.8 83.609 -3.7289 49 20 4 0 0 0 0.71273 1 16591 16591 12.532 0.89125 1 7762600 + 44195 15547 29363 29383 43535 43535 0.009113943946204017 SWRRRWQHRYW 11 Unmodified _SWRRRWQHRYW_ 0 0 0 ENST00000570069.5_1_16:1826945-1827407:+|nuORF;ENST00000561903.6_1_16:1826945-1828699:+|nuORF ENST00000570069.5_1_16:1826945-1827407:+|nuORF ENST00000570069.5_1_16:1826945-1827407:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 572.3992919921875 3 572.962541 1715.86579 0.29193 0.00016726 2.0597 0.0011801 2.3516 0.0013474 572.9637260413308 162.89 0.20828 162.89 162.83 163.04 0 6 5 2 0 0 0 0.96228 1 32778 32778 0 0 1 21210000 44196 11309 29364 29384 43536 43536 0.03649571596884016 SWRRRWQHRYW 11 Unmodified _SWRRRWQHRYW_ 0 0 0 ENST00000570069.5_1_16:1826945-1827407:+|nuORF;ENST00000561903.6_1_16:1826945-1828699:+|nuORF ENST00000570069.5_1_16:1826945-1827407:+|nuORF ENST00000570069.5_1_16:1826945-1827407:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 572.4640502929688 3 572.962541 1715.86579 0.1431 8.199E-05 4.1576 0.0023822 4.3007 0.0024642 573.2993496597687 167.08 0.099045 162.29 162.22 162.32 -4.7898 4 2 2 0 0 0 0.89136 1 33626 33626 0 0 1 17918000 44197 11309 29364 29384 43537 43537 0.03649571596884016 SWRSFERR 8 Unmodified _SWRSFERR_ 0 0 0 ENST00000478509.1_1_X:153674683-153677303:+|nuORF ENST00000478509.1_1_X:153674683-153677303:+|nuORF ENST00000478509.1_1_X:153674683-153677303:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.0745544433594 3 375.196701 1122.56827 -0.62804 -0.00023564 0.1892 7.0988E-05 -0.43884 -0.00016465 375.19667780524884 14.542 0.3176 13.369 13.279 13.597 -1.173 15 8 3 0 0 0 0.86089 1 1969 1969 1.6526 0 1 1289900 44198 10321 29365 29385 43538 43538 0.011893150004198105 SWRSFERR 8 Unmodified _SWRSFERR_ 0 0 0 ENST00000478509.1_1_X:153674683-153677303:+|nuORF ENST00000478509.1_1_X:153674683-153677303:+|nuORF ENST00000478509.1_1_X:153674683-153677303:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.196701 1122.56827 -0.28773 -0.00010795 0.058648 2.2004E-05 -0.22908 -8.595E-05 375.1967415860896 13.668 0.20657 13.668 13.549 13.755 0 0.18536 -0.00028073 NaN 1.6526 12 5 3 NaN NaN NaN NaN 0 NaN NaN 0 2121500 44199 10321 29365 29385 0.011893150004198105 SWRSFERR 8 Unmodified _SWRSFERR_ 0 0 0 ENST00000478509.1_1_X:153674683-153677303:+|nuORF ENST00000478509.1_1_X:153674683-153677303:+|nuORF ENST00000478509.1_1_X:153674683-153677303:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.196701 1122.56827 -0.88936 -0.00033369 0.75486 0.00028322 -0.1345 -5.0464E-05 375.1969542954132 14.526 0.23765 13.411 13.263 13.501 -1.1142 -0.071677 0.00050292 NaN 1.6526 17 6 4 NaN NaN NaN NaN 0 NaN NaN 0 1692300 44200 10321 29365 29385 0.011893150004198105 SWSLLLDQ 8 Unmodified _SWSLLLDQ_ 0 0 0 REV__ENST00000342245.8_1_11:6415895-6416042:+|nuORF REV__ENST00000342245.8_1_11:6415895-6416042:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23651123046875 2 481.2531 960.491647 -0.1499 -7.2139E-05 -1.077 -0.00051832 -1.2269 -0.00059046 481.2530802264014 25.602 0.65879 23.748 23.638 24.297 -1.8534 27 18 3 0 0 0 8448 1 4314 4314 0.25148 0.23821 1 696730 + 44201 20720 29366 29386 43539 43539 0.00982078660570096 SWTRRRRWLRP 11 Unmodified _SWTRRRRWLRP_ 0 0 0 ENST00000344697.2_1_3:43122992-43147513:-|nuORF ENST00000344697.2_1_3:43122992-43147513:-|nuORF ENST00000344697.2_1_3:43122992-43147513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3882446289062 2 785.452917 1568.89128 NaN NaN NaN NaN NaN NaN NaN 136.74 1 131.82 131.32 132.32 -4.9216 0 0 0 0.23698 1 26281 26281 1.0715 0.72083 1 44202 8896 29367 29387 43540 43540 0.12959046119317463 SWVTHSTV 8 Unmodified _SWVTHSTV_ 0 0 0 ENST00000370163.7_2_1:100316155-100316559:+|nuORF ENST00000370163.7_2_1:100316155-100316559:+|nuORF ENST00000370163.7_2_1:100316155-100316559:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 306.15478515625 3 306.15562 915.445031 NaN NaN NaN NaN NaN NaN NaN 111.43 1 107.01 106.51 107.51 -4.4231 0 0 0 0.21486 1 21955 21955 3.9444 0 1 44203 9136 29368 29388 43541 43541 -0.016073611707270175 SWWRTSRTWL 10 Unmodified _SWWRTSRTWL_ 0 0 0 ENST00000589707.5_1_19:44732617-44732743:+|nuORF;ENST00000588219.5_1_19:44732617-44738899:+|nuORF ENST00000589707.5_1_19:44732617-44732743:+|nuORF ENST00000589707.5_1_19:44732617-44732743:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2390441894531 3 460.238678 1377.6942 NaN NaN NaN NaN NaN NaN NaN 73.492 1 69.816 69.316 70.316 -3.6764 0 0 0 2.8426 1 13888 13888 0.063865 0.032455 1 44204 11569 29369 29389 43542 43542 0.02046401785855778 SWWRTSRTWL 10 Unmodified _SWWRTSRTWL_ 0 0 0 ENST00000589707.5_1_19:44732617-44732743:+|nuORF;ENST00000588219.5_1_19:44732617-44738899:+|nuORF ENST00000589707.5_1_19:44732617-44732743:+|nuORF ENST00000589707.5_1_19:44732617-44732743:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2388610839844 3 460.238678 1377.6942 NaN NaN NaN NaN NaN NaN NaN 64.224 1 60.967 60.467 61.467 -3.2567 0 0 0 2.8426 1 12057 12057 0.26539 0.093389 1 44205 11569 29369 29389 43543 43543 0.02046401785855778 SWWSAVSP 8 Unmodified _SWWSAVSP_ 0 0 0 ENST00000483405.5_2_16:29916187-29917348:+|nuORF ENST00000483405.5_2_16:29916187-29917348:+|nuORF ENST00000483405.5_2_16:29916187-29917348:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23260498046875 2 460.21906 918.423567 NaN NaN NaN NaN NaN NaN NaN 92.57 1 92.57 92.07 93.07 0 0 0 0 0.23025 1 18100 18100 0.62683 0.21856 1 44206 10414 29370 29390 43544 43544 -0.03890746199431305 SWYIPICLMPS 11 Unmodified _SWYIPICLMPS_ 0 0 0 ENST00000564747.1_1_16:27472673-27473321:-|nuORF ENST00000564747.1_1_16:27472673-27473321:-|nuORF ENST00000564747.1_1_16:27472673-27473321:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21759033203125 3 437.215494 1308.62465 NaN NaN NaN NaN NaN NaN NaN 68.468 1 68.468 67.968 68.968 0 0 0 0 0.22745 1 13239 13239 10.315 2.8382 1 44207 11349 29371 29391 43545 43545 -0.017315612694574156 SWYLDQTLRK 10 Unmodified _SWYLDQTLRK_ 0 0 0 ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B ENSG00000120733|ENST00000314358|KDM3B ENSG00000120733|ENST00000314358|KDM3B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22784423828125 3 437.234822 1308.68264 NaN NaN NaN NaN NaN NaN NaN 70.784 1 67.317 66.817 67.817 -3.467 0 0 0 2.8426 1 13408 13408 0.043787 0 1 44208 3152 29372 29392 43546 43546 0.04064159971835579 SYAVEFHPD 9 Unmodified _SYAVEFHPD_ 0 0 0 ENST00000568463.1_1_16:68389580-68391124:+|nuORF;ENST00000568975.5_1_16:68386292-68391124:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7 ENST00000568463.1_1_16:68389580-68391124:+|nuORF ENST00000568463.1_1_16:68389580-68391124:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2731323242188 2 532.737814 1063.46108 -0.046199 -2.4612E-05 -1.169 -0.00062274 -1.2151 -0.00064736 532.7373085629465 83.012 0.68758 79.313 78.933 79.621 -3.6985 33 19 2 0 0 0 0.84208 1 15776 15776 7.2892 1.5288 1 3153000 44209 3746 29373 29393 43547 43547 -0.0681169972447151 SYCCCCCD 8 Unmodified _SYCCCCCD_ 0 0 0 REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.0965881347656 2 450.09667 898.178787 NaN NaN NaN NaN NaN NaN NaN 176.55 1 171.76 171.26 172.26 -4.7898 0 0 0 0.21486 1 36103 36103 0 0 1 + 44210 21038 29374 29394 43548 43548 -0.2743751865457398 SYCCCCCD 8 Unmodified _SYCCCCCD_ 0 0 0 REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.09588623046875 2 450.09667 898.178787 NaN NaN NaN NaN NaN NaN NaN 158.87 1 153.59 153.09 154.09 -5.2712 0 0 0 0.21486 1 30825 30825 0.79363 0.79363 1 + 44211 21038 29374 29394 43549 43549 -0.2743751865457398 SYCCNSDWWP 10 Unmodified _SYCCNSDWWP_ 0 0 0 REV__ENST00000574306.1_1_17:1616268-1616457:-|nuORF REV__ENST00000574306.1_1_17:1616268-1616457:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7508544921875 2 630.726066 1259.43758 NaN NaN NaN NaN NaN NaN NaN 105.31 1 101.22 100.72 101.72 -4.0913 0 0 0 0.22588 1 20254 20254 4.3292 0.38484 1 + 44212 23193 29375 29395 43550 43550 -0.18176204824953857 SYCSREWGCAE 11 Unmodified _SYCSREWGCAE_ 0 0 0 ENSG00000136383|ENST00000258888|ALPK3 ENSG00000136383|ENST00000258888|ALPK3 ENSG00000136383|ENST00000258888|ALPK3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 431.0933532714844 3 430.834112 1289.48051 0.05513 2.3752E-05 -0.16521 -7.1178E-05 -0.11008 -4.7426E-05 430.83408543252415 32.127 0.56719 29.897 29.657 30.224 -2.2305 21 15 2 0 0 0 0.96225 1 5857 5857 0 0 1 794350 44213 4009 29376 29396 43551 43551 -0.1526543476752522 SYDANTVASLY 11 Unmodified _SYDANTVASLY_ 0 0 0 CHD9|p.F2295L|1|0.38|ENSG00000177200|chr16:53307785-53307785|C/A|missense_variant CHD9|p.F2295L|1|0.38|ENSG00000177200|chr16:53307785-53307785|C/A|missense_variant CHD9|p.F2295L|1|0.38|ENSG00000177200|chr16:53307785-53307785|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2816162109375 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 83.276 1 79.669 79.169 80.169 -3.6079 0 0 0 0.22862 1 16278 16278 9.3831 0 1 44214 521 29377 29397 43552 43552 -0.047637936983846885 SYDCACSPGY 10 Unmodified _SYDCACSPGY_ 0 0 0 ADGRE5|p.V92A|1|0.23|ENSG00000123146|chr19:14391008-14391008|T/C|missense_variant ADGRE5|p.V92A|1|0.23|ENSG00000123146|chr19:14391008-14391008|T/C|missense_variant ADGRE5|p.V92A|1|0.23|ENSG00000123146|chr19:14391008-14391008|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26123046875 2 533.186242 1064.35793 NaN NaN NaN NaN NaN NaN NaN 85.161 1 85.161 84.661 85.661 0 0 0 0 0.22588 1 16619 16619 7.2892 2.5332 1 44215 78 29378 29398 43553 43553 -0.17167271498942682 SYDFTLGQD 9 Unmodified _SYDFTLGQD_ 0 0 0 REV__B4GALT3|p.P44L|1|0.29|ENSG00000158850|chr1:161175930-161175930|G/A|missense_variant REV__B4GALT3|p.P44L|1|0.29|ENSG00000158850|chr1:161175930-161175930|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6940307617188 2 523.227279 1044.44001 -0.3723 -0.0001948 -1.5862 -0.00082995 -1.9585 -0.0010248 523.2265434980433 85.665 1.0128 81.714 81.248 82.261 -3.9503 57 28 3 0 0 0 0.30056 1 16221 16221 0.40827 0 1 9089400 + 44216 13172 29379 29399 43554 43554 -0.08043709823959944 SYDGCDDMGDC 11 Unmodified _SYDGCDDMGDC_ 0 0 0 REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant REV__SORL1|p.F2103Lfs*44|1|0.22|ENSG00000137642|chr11:121625218-121625218|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2598876953125 2 590.665014 1179.31547 NaN NaN NaN NaN NaN NaN NaN 46.784 1 43.918 43.418 44.418 -2.8666 0 0 0 0.23324 1 8524 8524 5.7319 3.8876 1 + 44217 16401 29380 29400 43555 43555 -0.2670103468949492 SYDLGKKP 8 Unmodified _SYDLGKKP_ 0 0 0 ENSG00000124145|ENST00000372733|SDC4 ENSG00000124145|ENST00000372733|SDC4 ENSG00000124145|ENST00000372733|SDC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7621154785156 2 454.247818 906.481082 -0.056593 -2.5707E-05 -0.63006 -0.0002862 -0.68665 -0.00031191 454.24740356584385 61.58 0.54572 61.58 61.291 61.837 0 21 15 2 0 0 0 0.87247 1 11854 11854 0.063987 0 1 1427500 44218 3293 29381 29401 43556 43556 0.024100960061332444 SYDPPMKEMF 10 Unmodified _SYDPPMKEMF_ 0 0 0 REV__ENST00000512630.5_1_4:143007384-143094853:-|nuORF REV__ENST00000512630.5_1_4:143007384-143094853:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7726440429688 2 622.769942 1243.52533 NaN NaN NaN NaN NaN NaN NaN 92.958 1 88.967 88.467 89.467 -3.9907 0 0 0 0.22588 1 18209 18209 6.2058 0.47393 1 + 44219 22559 29382 29402 43557 43557 -0.08669003954196342 SYDVWKTVWQ 10 Unmodified _SYDVWKTVWQ_ 0 0 0 REV__ENSG00000145632|ENST00000274289|PLK2 REV__ENSG00000145632|ENST00000274289|PLK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.88287353515625 3 437.883789 1310.62954 NaN NaN NaN NaN NaN NaN NaN 5.0481 1 4.4218 3.9218 4.9218 -0.62626 0 0 0 0.22588 1 206 206 0.15932 0 1 + 44220 16844 29383 29403 43558 43558 -0.013352178108107182 SYDWSACHPD 10 Unmodified _SYDWSACHPD_ 0 0 0 REV__nc|ENSG00000121753|O60241-4|ADGRB2 REV__nc|ENSG00000121753|O60241-4|ADGRB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2630615234375 2 590.721838 1179.42912 0.71948 0.00042501 0.75542 0.00044624 1.4749 0.00087125 591.2239479376179 125.76 0.76842 120.99 120.69 121.46 -4.7681 29 21 2 0 0 0 1.127 1 24155 24155 0.20733 0.19406 1 2058200 + 44221 15665 29384 29404 43559 43559 -0.15341435469940734 SYDWSDYSQP 10 Unmodified _SYDWSDYSQP_ 0 0 0 REV__nc|ENSG00000184949|F5H4B4-2|FAM227A REV__nc|ENSG00000184949|F5H4B4-2|FAM227A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 624.134033203125 2 624.2462 1246.47785 NaN NaN NaN NaN NaN NaN NaN 163.8 1 158.76 158.26 159.26 -5.0446 0 0 0 0.22588 1 31899 31899 3.5965 0.31518 1 + 44222 18923 29385 29405 43560 43560 -0.13553243629189637 SYDYRNAVY 9 Unmodified _SYDYRNAVY_ 0 0 0 REV__ENSG00000162639|ENST00000651461|HENMT1 REV__ENSG00000162639|ENST00000651461|HENMT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3276977539062 2 575.76182 1149.50909 -0.14351 -8.2625E-05 0.71023 0.00040892 0.56672 0.0003263 575.762178022003 82.034 0.61704 78.346 77.945 78.562 -3.6879 28 17 2 0 0 0 0.34411 1 15650 15650 29.082 0.59474 1 1898600 + 44223 17513 29386 29406 43561 43561 -0.05968625804439398 SYDYRNAVY 9 Unmodified _SYDYRNAVY_ 0 0 0 REV__ENSG00000162639|ENST00000651461|HENMT1 REV__ENSG00000162639|ENST00000651461|HENMT1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.76182 1149.50909 -0.14351 -8.2625E-05 0.71023 0.00040892 0.56672 0.0003263 575.762178022003 82.034 0.61704 78.346 77.945 78.562 -3.6879 -0.022002 -0.00018143 NaN 29.082 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1898600 + 44224 17513 29386 29406 -0.05968625804439398 SYEDIKNVV 9 Unmodified _SYEDIKNVV_ 0 0 0 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2820434570312 2 533.774396 1065.53424 0.062439 3.3329E-05 0.08955 4.7799E-05 0.15199 8.1128E-05 533.7743732821614 83.971 0.82436 80.363 79.907 80.731 -3.6079 66 23 4 0 0 0 0.061087 1 16413 16413 71.922 19.654 1 17720000 44225 5075 29387 29407 43562 43562 0.004094289981367183 SYEDIKNVV 9 Unmodified _SYEDIKNVV_ 0 0 0 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2830200195312 2 533.774396 1065.53424 0.51184 0.00027321 -0.22331 -0.0001192 0.28853 0.00015401 533.7742684403645 84.257 0.79813 80.348 79.936 80.734 -3.9093 57 22 4 0 0 0 0.23744 1 16010 16010 52.268 16.141 1 13587000 44226 5075 29387 29407 43563 43563 0.004094289981367183 SYEDIKNVV 9 Unmodified _SYEDIKNVV_ 0 0 0 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2828979492188 2 533.774396 1065.53424 0.016349 8.7267E-06 0.16763 8.9475E-05 0.18398 9.8202E-05 533.7744612125704 84.041 0.87976 80.33 79.992 80.871 -3.7117 62 24 4 0 0 0 0.07121 1 16023 16023 68.081 35.295 1 20236000 44227 5075 29387 29407 43564 43564 0.004094289981367183 SYEENSADTTK 11 Unmodified _SYEENSADTTK_ 0 0 0 REV__ENST00000460720.5_1_2:9546965-9548358:-|nuORF REV__ENST00000460720.5_1_2:9546965-9548358:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7779541015625 2 622.767497 1243.52044 NaN NaN NaN NaN NaN NaN NaN 86.124 1 82.395 81.895 82.895 -3.7289 0 0 0 0.22683 1 16466 16466 10.8 2.8894 1 + 44228 15571 29388 29408 43565 43565 -0.09157893291626351 SYELHKFY 8 Unmodified _SYELHKFY_ 0 0 0 nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.D1813G|1|0.75|ENSG00000115306|chr2:54649850-54649850|A/G|missense_variant nc|ENSG00000115306|Q01082-3|SPTBN1 nc|ENSG00000115306|Q01082-3|SPTBN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7754516601562 2 543.766374 1085.5182 NaN NaN NaN NaN NaN NaN NaN 122.89 1 118.16 117.66 118.66 -4.731 0 0 0 0.21323 1 23606 23606 14.582 2.9414 1 44229 2844 29389 29409 43566 43566 -0.021142324480933894 SYEPVVLKRL 10 Unmodified _SYEPVVLKRL_ 0 0 0 REV__ENST00000528063.5_1_11:66049809-66051065:+|nuORF REV__ENST00000528063.5_1_11:66049809-66051065:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2775268554688 2 602.358431 1202.70231 NaN NaN NaN NaN NaN NaN NaN 57.403 1 57.403 56.903 57.903 0 0 0 0 0.22588 1 10973 10973 6.7232 3.1267 1 + 44230 18435 29390 29410 43567 43567 0.1090653598262179 SYEQFAAY 8 Unmodified _SYEQFAAY_ 0 0 0 REV__ENST00000493579.1_1_3:180041073-180041484:+|nuORF REV__ENST00000493579.1_1_3:180041073-180041484:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27069091796875 2 489.713808 977.413062 0.18784 9.1987E-05 -0.81265 -0.00039796 -0.62481 -0.00030598 489.7134222891415 21.764 0.69565 21.764 21.46 22.155 0 32 19 2 0 0 0 0.98792 1 3710 3710 14.582 9.351 1 2207400 + 44231 22352 29391 29411 43568 43568 -0.07654773644526358 SYERLVSPD 9 Unmodified _SYERLVSPD_ 0 0 0 REV__tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1 REV__tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26220703125 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 84.432 1 80.523 80.023 81.023 -3.9093 0 0 0 0.1599 1 16048 16048 29.082 10.947 1 + 44232 24896 29392 29412 43569 43569 -0.01583741661647764 SYFEIPTKEF 10 Unmodified _SYFEIPTKEF_ 0 0 0 CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.T718Pfs*5|1|0.11|ENSG00000143702|chr1:243165808-243165808|T/-|frameshift_variant;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;CEP170|p.N481Ifs*26|1|0.13|ENSG00000143702|chr1:243185903-243185903|T/-|frameshift_variant;ENST00000502249.6_1_4:119401524-119435218:+|nuORF CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76953125 2 630.810979 1259.6074 NaN NaN NaN NaN NaN NaN NaN 80.406 1 76.896 76.396 77.396 -3.5102 0 0 0 0.22588 1 15702 15702 6.2058 0.47393 1 44233 490 29393 29413 43570 43570 -0.012014422792390178 SYFGVTEA 8 Unmodified _SYFGVTEA_ 0 0 0 REV__ENSG00000149150|ENST00000278426|SLC43A1 REV__ENSG00000149150|ENST00000278426|SLC43A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2153015136719 2 437.203076 872.391599 NaN NaN NaN NaN NaN NaN NaN 137.83 1 132.99 132.49 133.49 -4.84 0 0 0 0.21486 1 26558 26558 9.3474 0 1 + 44234 16999 29394 29414 43571 43571 -0.04970158673245351 SYFHCTLIGY 10 Unmodified _SYFHCTLIGY_ 0 0 0 nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF;ENST00000392495.7_1_12:121202804-121206971:-|nuORF;ENSG00000157837|ENST00000353487|SPPL3 nc|ENSG00000157837|Q8TCT6-3|SPPL3 nc|ENSG00000157837|Q8TCT6-3|SPPL3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.28125 2 602.278792 1202.54303 NaN NaN NaN NaN NaN NaN NaN 72.828 1 72.828 72.328 73.328 0 0 0 0 0.22588 1 14128 14128 11.64 3.7301 1 44235 5143 29395 29415 43572 43572 -0.05013920637020419 SYFHQVAK 8 Unmodified _SYFHQVAK_ 0 0 0 REV__ENSG00000119715|ENST00000644823|ESRRB REV__ENSG00000119715|ENST00000644823|ESRRB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.254638671875 2 490.253434 978.492316 NaN NaN NaN NaN NaN NaN NaN 103.46 1 99.403 98.903 99.903 -4.0543 0 0 0 0.20462 1 19893 19893 21.747 2.3076 1 + 44236 15594 29396 29416 43573 43573 0.002209181002854166 SYFKYQDN 8 Unmodified _SYFKYQDN_ 0 0 0 REV__ENSG00000189043|ENST00000339600|NDUFA4 REV__ENSG00000189043|ENST00000339600|NDUFA4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2717895507812 2 532.737814 1063.46108 -0.38423 -0.0002047 0.84213 0.00044864 0.4579 0.00024394 532.7380208989604 109.27 0.94254 104.89 104.5 105.44 -4.3776 32 26 2 0 0 0 1.0066 1 21492 21492 7.2892 0 1 1230400 + 44237 19186 29397 29417 43574 43574 -0.0681169972447151 SYFLTLNHYFM 11 Unmodified _SYFLTLNHYFM_ 0 0 0 REV__ENST00000492102.1_1_1:75172708-75172849:-|nuORF REV__ENST00000492102.1_1_1:75172708-75172849:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7411193847656 3 479.228679 1434.66421 NaN NaN NaN NaN NaN NaN NaN 104.15 1 99.932 99.432 100.43 -4.2183 0 0 0 0.20745 1 20482 20482 17.049 6.7333 1 + 44238 22329 29398 29418 43575 43575 -0.035737179943907904 SYFYEGDPT 9 Unmodified _SYFYEGDPT_ 0 0 0 REV__nc|ENSG00000121101|Q8IWB6-2|TEX14 REV__nc|ENSG00000121101|Q8IWB6-2|TEX14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2137756347656 3 360.150312 1077.42911 NaN NaN NaN NaN NaN NaN NaN 14.721 1 13.548 13.048 14.048 -1.173 0 0 0 0.19622 1 2012 2012 0.96228 0.26461 1 + 44239 24016 29399 29419 43576 43576 -0.10651112198274859 SYGQESGPD 9 Unmodified _SYGQESGPD_ 0 0 0 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B nc|ENSG00000116514|Q6ZMZ0-3|RNF19B nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 470.1445617675781 2 470.188154 938.361755 NaN NaN NaN NaN NaN NaN NaN 13.229 1 12.219 11.719 12.719 -1.0098 0 0 0 0.23508 1 1901 1901 4.3292 1.7518 1 44240 2929 29400 29420 43577 43577 -0.109891424092325 SYGQKKHKVGI 11 Unmodified _SYGQKKHKVGI_ 0 0 0 REV__ENSG00000145087|ENST00000471454|STXBP5L REV__ENSG00000145087|ENST00000471454|STXBP5L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7689208984375 2 622.859129 1243.70371 NaN NaN NaN NaN NaN NaN NaN 74.556 1 70.962 70.462 71.462 -3.594 0 0 0 0.23379 1 14162 14162 5.2969 0 1 + 44241 16819 29401 29421 43578 43578 0.09160170071368157 SYGRSSPLL 9 Unmodified _SYGRSSPLL_ 0 0 0 ENSG00000168143|ENST00000306858|FAM83B ENSG00000168143|ENST00000306858|FAM83B ENSG00000168143|ENST00000306858|FAM83B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2647705078125 2 490.263999 978.513445 0.27829 0.00013644 0.5434 0.00026641 0.8217 0.00040285 490.2643432041311 102.48 0.57997 98.46 98.009 98.589 -4.0212 21 16 2 0 0 0 0.37087 1 19645 19645 0.40827 0 1 937770 44242 5885 29402 29422 43579 43579 0.023328834091330464 SYGVAPNYVAY 11 Unmodified _SYGVAPNYVAY_ 0 0 0 REV__ENSG00000167291|ENST00000310924|TBC1D16 REV__ENSG00000167291|ENST00000310924|TBC1D16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2896728515625 2 602.287671 1202.56079 NaN NaN NaN NaN NaN NaN NaN 107.08 1 102.76 102.26 103.26 -4.32 0 0 0 0.23324 1 21082 21082 5.7319 0.50118 1 + 44243 17915 29403 29423 43580 43580 -0.03238882110531449 SYGWHRLY 8 Unmodified _SYGWHRLY_ 0 0 0 REV__ENST00000526755.5_1_8:42911676-42932640:+|nuORF REV__ENST00000526755.5_1_8:42911676-42932640:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2618408203125 2 541.264333 1080.51411 NaN NaN NaN NaN NaN NaN NaN 54.215 1 54.215 53.715 54.715 0 0 0 0 0.21039 1 10335 10335 16.942 2.3606 1 + 44244 22694 29404 29424 43581 43581 -0.022922771511503015 SYGWHRLY 8 Unmodified _SYGWHRLY_ 0 0 0 REV__ENST00000526755.5_1_8:42911676-42932640:+|nuORF REV__ENST00000526755.5_1_8:42911676-42932640:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2623901367188 2 541.264333 1080.51411 NaN NaN NaN NaN NaN NaN NaN 57.431 1 54.179 53.679 54.679 -3.2517 0 0 0 0.21039 1 10662 10662 16.942 0.79319 1 + 44245 22694 29404 29424 43582 43582 -0.022922771511503015 SYGWHRLY 8 Unmodified _SYGWHRLY_ 0 0 0 REV__ENST00000526755.5_1_8:42911676-42932640:+|nuORF REV__ENST00000526755.5_1_8:42911676-42932640:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2625732421875 2 541.264333 1080.51411 NaN NaN NaN NaN NaN NaN NaN 43.451 1 40.704 40.204 41.204 -2.7475 0 0 0 0.21323 1 7844 7844 14.582 2.0501 1 + 44246 22694 29404 29424 43583 43583 -0.022922771511503015 SYIALLHYWEF 11 Unmodified _SYIALLHYWEF_ 0 0 0 ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2428283691406 3 481.243206 1440.70779 NaN NaN NaN NaN NaN NaN NaN 66.336 1 63.289 62.789 63.789 -3.047 0 0 0 0.22632 1 12851 12851 0.026206 0 1 44247 5869 29405 29425 43584 43584 0.005062147743956302 SYIALLHYWEF 11 Unmodified _SYIALLHYWEF_ 0 0 0 ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2420349121094 3 481.243206 1440.70779 NaN NaN NaN NaN NaN NaN NaN 149.92 1 145.19 144.69 145.69 -4.7323 0 0 0 0.22632 1 29773 29773 0.026206 0 1 44248 5869 29405 29425 43585 43585 0.005062147743956302 SYIALLHYWEF 11 Unmodified _SYIALLHYWEF_ 0 0 0 ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2430419921875 3 481.243206 1440.70779 NaN NaN NaN NaN NaN NaN NaN 87.301 1 83.324 82.824 83.824 -3.9775 0 0 0 0.22632 1 16625 16625 0.026206 0 1 44249 5869 29405 29425 43586 43586 0.005062147743956302 SYIALLHYWEF 11 Unmodified _SYIALLHYWEF_ 0 0 0 ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24273681640625 3 481.243206 1440.70779 NaN NaN NaN NaN NaN NaN NaN 56.036 1 52.86 52.36 53.36 -3.1761 0 0 0 0.22632 1 10416 10416 0.026206 0 1 44250 5869 29405 29425 43587 43587 0.005062147743956302 SYIALLHYWEF 11 Unmodified _SYIALLHYWEF_ 0 0 0 ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2444152832031 3 481.243206 1440.70779 NaN NaN NaN NaN NaN NaN NaN 70.838 1 67.371 66.871 67.871 -3.467 0 0 0 0.22632 1 13419 13419 0.172 0 1 44251 5869 29405 29425 43588 43588 0.005062147743956302 SYIFPNLMP 9 Unmodified _SYIFPNLMP_ 0 0 0 REV__nc|ENSG00000171459|Q8NGR2|OR1L6;REV__ENSG00000094661|ENST00000641398|OR1I1;REV__ENSG00000127530|ENST00000641666|OR7C1;REV__ENSG00000136834|ENST00000259357|OR1J1;REV__ENSG00000188000|ENST00000641288|OR7D2;REV__ENSG00000197233|ENST00000335302|OR1J2 REV__ENSG00000188000|ENST00000641288|OR7D2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2723999023438 2 541.272978 1080.5314 NaN NaN NaN NaN NaN NaN NaN 56.16 1 53.266 52.766 53.766 -2.8944 0 0 0 0.21469 1 10755 10755 19.257 0 1 + 44252 19124;24166;14595;15891;16353;19315 29406 29426 43589 43589 -0.0056411766038309 SYIGTFDPG 9 Unmodified _SYIGTFDPG_ 0 0 0 nc|ENSG00000013392|Q9UIY3-2|RWDD2A;ENSG00000013392|ENST00000369724|RWDD2A nc|ENSG00000013392|Q9UIY3-2|RWDD2A nc|ENSG00000013392|Q9UIY3-2|RWDD2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72332763671875 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 105.09 1 100.87 100.37 101.37 -4.2183 0 0 0 0.20155 1 20676 20676 23.148 2.2772 1 44253 1098 29407 29427 43590 43590 -0.050784871274800025 SYIKTVFW 8 Unmodified _SYIKTVFW_ 0 0 0 REV__ENSG00000125304|ENST00000376387|TM9SF2 REV__ENSG00000125304|ENST00000376387|TM9SF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2814331054688 2 522.28166 1042.54877 NaN NaN NaN NaN NaN NaN NaN 91.709 1 87.784 87.284 88.284 -3.9251 0 0 0 0.21452 1 17951 17951 13.508 0.97634 1 + 44254 15807 29408 29428 43591 43591 0.029195459369248056 SYILQKSTF 9 Unmodified _SYILQKSTF_ 0 0 0 BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant;BRCA2|p.N1642Mfs*2|1|0.08|ENSG00000139618|chr13:32339277-32339277|A/-|frameshift_variant;BRCA2|p.K1691Nfs*15|1|0.11|ENSG00000139618|chr13:32339422-32339422|A/-|frameshift_variant;BRCA2|p.N1784Tfs*7|1|0.4|ENSG00000139618|chr13:32339700-32339700|A/-|frameshift_variant;BRCA2|p.T2515Nfs*24|1|0.35|ENSG00000139618|chr13:32356530-32356531|-/A|frameshift_variant;BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7947387695312 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 162.75 1 162.75 162.25 163.25 0 0 0 0 0.23508 1 32745 32745 10.074 0.6908 1 44255 328 29409 29429 43592 43592 0.036346097574551095 SYIRTEKLL 9 Unmodified _SYIRTEKLL_ 0 0 0 nc|ENSG00000150627|Q8IZU2|WDR17;ENSG00000150627|ENST00000508596|WDR17 nc|ENSG00000150627|Q8IZU2|WDR17 nc|ENSG00000150627|Q8IZU2|WDR17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2225646972656 3 374.888763 1121.64446 0.15488 5.8063E-05 -0.27632 -0.00010359 -0.12144 -4.5526E-05 374.8886276337769 77.532 0.82784 77.532 77.048 77.876 0 77 23 4 0 0 0 0.68708 1 14992 14992 7.1017 0.90987 1 20807000 44256 4829 29410 29430 43593 43593 0.08850274057181196 SYIRTEKLL 9 Unmodified _SYIRTEKLL_ 0 0 0 nc|ENSG00000150627|Q8IZU2|WDR17;ENSG00000150627|ENST00000508596|WDR17 nc|ENSG00000150627|Q8IZU2|WDR17 nc|ENSG00000150627|Q8IZU2|WDR17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.22296142578125 3 374.888763 1121.64446 0.0026937 1.0099E-06 -0.20217 -7.579E-05 -0.19947 -7.478E-05 374.8886676564766 81.007 1.0488 77.168 76.664 77.713 -3.8392 101 29 5 0 0 0 0.1629 1 15362 15362 42.312 0 1 16763000 44257 4829 29410 29430 43594 43594 0.08850274057181196 SYIYEEFM 8 Unmodified _SYIYEEFM_ 0 0 0 nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant;PPIP5K2|p.V1179Yfs*3|2|0.15|ENSG00000145725|chr5:103194934-103194934|A/-|frameshift_variant;nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1 nc|ENSG00000168781|Q6PFW1-6|PPIP5K1 nc|ENSG00000168781|Q6PFW1-6|PPIP5K1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2711791992188 2 541.230976 1080.4474 0.41098 0.00022244 -2.874 -0.0015555 -2.463 -0.0013331 541.2293609532001 163.77 0.20947 158.98 158.88 159.09 -4.7898 7 5 2 0 0 0 0.77935 1 32687 32687 5.2307 0 1 4328700 44258 4616 29411 29431 43595 43595 -0.08960693547942356 SYKATENDIY 10 Unmodified _SYKATENDIY_ 0 0 0 HNRNPF|p.P297S|1|0.08|ENSG00000169813|chr10:43386996-43386996|G/A|missense_variant HNRNPF|p.P297S|1|0.08|ENSG00000169813|chr10:43386996-43386996|G/A|missense_variant HNRNPF|p.P297S|1|0.08|ENSG00000169813|chr10:43386996-43386996|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2942504882812 2 602.280043 1202.54553 0.34061 0.00020514 -0.5752 -0.00034643 -0.23459 -0.00014129 602.2796461333897 54.214 0.45763 54.214 54.103 54.561 0 15 12 2 0 0 0 0.744 1 10364 10364 6.7232 0 1 838530 44259 11911 29412 29432 43596 43596 -0.047637936983846885 SYKATENDIY 10 Unmodified _SYKATENDIY_ 0 0 0 HNRNPF|p.P297S|1|0.08|ENSG00000169813|chr10:43386996-43386996|G/A|missense_variant HNRNPF|p.P297S|1|0.08|ENSG00000169813|chr10:43386996-43386996|G/A|missense_variant HNRNPF|p.P297S|1|0.08|ENSG00000169813|chr10:43386996-43386996|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.29296875 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 61.902 1 61.902 61.402 62.402 0 0 0 0 0.22588 1 11873 11873 10.074 0.6908 1 44260 11911 29412 29432 43597 43597 -0.047637936983846885 SYKCSMEQGLY 11 Unmodified _SYKCSMEQGLY_ 0 0 0 ENST00000460505.5_1_3:49053470-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-2|DALRD3;ENSG00000178149|ENST00000341949|DALRD3;ENST00000498794.1_1_3:49053470-49053815:-|nuORF;ENST00000467457.5_1_3:49053470-49054225:-|nuORF;ENST00000472331.5_1_3:49053470-49054132:-|nuORF;nc|ENSG00000178149|Q5D0E6-4|DALRD3 ENST00000460505.5_1_3:49053470-49055997:-|nuORF ENST00000460505.5_1_3:49053470-49055997:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2273254394531 3 436.858146 1307.55261 -0.16175 -7.066E-05 -1.5196 -0.00066383 -1.6813 -0.00073449 437.1920884878767 68.559 0.71257 68.559 68.254 68.966 0 37 19 3 0 0 0 0.63394 1 13272 13272 0.026206 0 1 3049800 44261 6559 29413 29433 43598 43598 -0.08886520413807375 SYKDPFTEP 9 Unmodified _SYKDPFTEP_ 0 0 0 REV__nc|ENSG00000166073|Q14439-2|GPR176 REV__nc|ENSG00000166073|Q14439-2|GPR176 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7960205078125 2 542.253297 1082.49204 0.042404 2.2994E-05 0.00738 4.0018E-06 0.049784 2.6995E-05 542.253242396384 112.86 0.92667 108.4 107.98 108.9 -4.4539 73 25 4 0 0 0 0.60805 1 22238 22238 12.532 0.89125 1 16713000 + 44262 17823 29414 29434 43599 43599 -0.04590546410258867 SYLIVSDKAR 10 Unmodified _SYLIVSDKAR_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;nc|ENSG00000141556|Q9BTW9-5|TBCD ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3220825195312 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 157.54 1 152.75 152.25 153.25 -4.7885 0 0 0 2.8426 1 31332 31332 0.043787 0 1 44263 4383 29415 29435 43600 43600 0.06533086051786086 SYLKVAYP 8 Unmodified _SYLKVAYP_ 0 0 0 ENST00000529230.5_1_11:46784652-46784697:-|nuORF ENST00000529230.5_1_11:46784652-46784697:-|nuORF ENST00000529230.5_1_11:46784652-46784697:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1748962402344 3 314.176133 939.506569 NaN NaN NaN NaN NaN NaN NaN 84.408 1 84.408 83.908 84.908 0 0 0 0 0.21486 1 16464 16464 1.8442 0.36234 1 44264 10946 29416 29436 43601 43601 0.03439570528553304 SYLQYTRILRR 11 Unmodified _SYLQYTRILRR_ 0 0 0 REV__nc|ENSG00000107831|P55075-2|FGF8 REV__nc|ENSG00000107831|P55075-2|FGF8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.265869140625 3 490.284287 1467.83103 NaN NaN NaN NaN NaN NaN NaN 117.89 1 117.89 117.39 118.39 0 0 0 0 0.22632 1 23223 23223 0.50596 0 1 + 44265 15094 29417 29437 43602 43602 0.11582890945510371 SYMERWFMRHK 11 Unmodified _SYMERWFMRHK_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.410888671875 2 785.87393 1569.73331 NaN NaN NaN NaN NaN NaN NaN 102.7 1 98.515 98.015 99.015 -4.1861 0 0 0 0.23698 1 20188 20188 1.3295 0.9789 1 + 44266 19411 29418 29438 43603 43603 -0.0287695724648529 SYMPFPSK 8 Unmodified _SYMPFPSK_ 0 0 0 REV__ENSG00000072364|ENST00000265343|AFF4 REV__ENSG00000072364|ENST00000265343|AFF4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7330017089844 2 478.730946 955.447339 NaN NaN NaN NaN NaN NaN NaN 61.56 1 58.598 58.098 59.098 -2.9614 0 0 0 0.23025 1 11870 11870 0.12286 0 1 + 44267 14285 29419 29439 43604 43604 -0.03216648757256735 SYNDKFYKD 9 Unmodified _SYNDKFYKD_ 0 0 0 ENST00000467022.1_1_3:113442441-113464796:-|nuORF;NAA50|p.D103Mfs*40|2|0.21|ENSG00000121579|chr3:113722932-113722932|T/-|frameshift_variant;ENSG00000121579|ENST00000240922|NAA50 ENST00000467022.1_1_3:113442441-113464796:-|nuORF ENST00000467022.1_1_3:113442441-113464796:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2697143554688 2 590.269478 1178.5244 0.48159 0.00028427 -0.13303 -7.8525E-05 0.34856 0.00020574 590.2694817082587 74.85 1.219 74.85 74.497 75.716 0 77 34 3 0 0 0 0.31714 1 14529 14529 30.637 0.79596 1 8026200 44268 3184 29420 29440 43605 43605 -0.0577175900725706 SYNEQRIREN 10 Unmodified _SYNEQRIREN_ 0 0 0 ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000198610|ENST00000263126|AKR1C4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2309875488281 3 436.881219 1307.62183 NaN NaN NaN NaN NaN NaN NaN 77.28 1 77.28 76.78 77.78 0 0 0 0 2.8426 1 15024 15024 3.8763 3.8501 1 44269 7464 29421 29441 43606 43606 -0.019679770784023276 SYNQRSDFY 9 Unmodified _SYNQRSDFY_ 0 0 0 REV__ENST00000527167.5_1_22:42967159-42969648:+|nuORF REV__ENST00000527167.5_1_22:42967159-42969648:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2684326171875 2 590.256902 1178.49925 NaN NaN NaN NaN NaN NaN NaN 109.02 1 104.84 104.34 105.34 -4.1826 0 0 0 0.23508 1 20982 20982 8.5933 0.68312 1 + 44270 18843 29422 29442 43607 43607 -0.0828581380981177 SYPLGQWKCY 10 Unmodified _SYPLGQWKCY_ 0 0 0 REV__CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant REV__CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7805786132812 2 622.792066 1243.56958 NaN NaN NaN NaN NaN NaN NaN 136.61 1 131.72 131.22 132.22 -4.8951 0 0 0 0.22588 1 26254 26254 10.824 2.0785 1 + 44271 13397 29423 29443 43608 43608 -0.04246231745696605 SYPLSFPYL 9 Unmodified _SYPLSFPYL_ 0 0 0 REV__ENSG00000105364|ENST00000253099|MRPL4 REV__ENSG00000105364|ENST00000253099|MRPL4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77685546875 2 543.778951 1085.54335 0.41711 0.00022681 1.4784 0.00080394 1.8955 0.0010308 543.777044619537 147.85 0.10759 142.79 142.74 142.84 -5.0595 4 2 2 0 0 0 0.5428 1 28640 28640 4.897 4.7692 1 1006900 + 44272 14981 29424 29444 43609 43609 0.003998223544613211 SYPPLRHMIF 10 Unmodified _SYPPLRHMIF_ 0 0 0 REV__nc|ENSG00000170854|Q8IUF8-3|RIOX2 REV__nc|ENSG00000170854|Q8IUF8-3|RIOX2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7525634765625 2 630.831526 1259.6485 NaN NaN NaN NaN NaN NaN NaN 124.66 1 119.89 119.39 120.39 -4.7681 0 0 0 0.22588 1 23940 23940 10.824 1.4408 1 + 44273 18183 29425 29445 43610 43610 0.029060402792538298 SYPVYQEPT 9 Unmodified _SYPVYQEPT_ 0 0 0 REV__ENSG00000184752|ENST00000327772|NDUFA12 REV__ENSG00000184752|ENST00000327772|NDUFA12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7939453125 2 542.253297 1082.49204 0.48882 0.00026506 0.17784 9.6432E-05 0.66665 0.0003615 542.2534394339344 108.08 1.6741 108.08 107.13 108.81 0 114 47 4 0 0 0 0.62102 1 21283 21283 11.64 0.81637 1 13488000 + 44274 18914 29426 29446 43611 43611 -0.04590546410236129 SYQAYAAGTY 10 Unmodified _SYQAYAAGTY_ 0 0 0 REV__ENST00000510826.1_1_6:17290237-17292347:+|nuORF REV__ENST00000510826.1_1_6:17290237-17292347:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7830810546875 2 547.743096 1093.47164 NaN NaN NaN NaN NaN NaN NaN 134.22 1 134.22 133.72 134.72 0 0 0 0 0.22588 1 26565 26565 6.7232 0 1 + 44275 15283 29427 29447 43612 43612 -0.07135717070036662 SYQEIPFY 8 Unmodified _SYQEIPFY_ 0 0 0 nc|ENSG00000113763|Q6ZN44-3|UNC5A;ENSG00000113763|ENST00000329542|UNC5A nc|ENSG00000113763|Q6ZN44-3|UNC5A nc|ENSG00000113763|Q6ZN44-3|UNC5A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6991577148438 2 523.745108 1045.47566 NaN NaN NaN NaN NaN NaN NaN 52.527 1 52.527 52.027 53.027 0 0 0 0 0.21486 1 9985 9985 12.532 0.89125 1 44276 2763 29428 29448 43613 43613 -0.045256275763449594 SYQKELANE 9 Unmodified _SYQKELANE_ 0 0 0 REV__ENSG00000182645|ENST00000333254|CCDC172 REV__ENSG00000182645|ENST00000333254|CCDC172 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2647705078125 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 65.946 1 62.663 62.163 63.163 -3.2832 0 0 0 0.23508 1 12403 12403 13.042 0 1 + 44277 18792 29429 29449 43614 43614 -0.028280455242793323 SYQNHYVR 8 Unmodified _SYQNHYVR_ 0 0 0 REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2769775390625 2 533.756872 1065.49919 0.16377 8.7412E-05 -1.2755 -0.00068082 -1.1118 -0.00059341 533.7562075056409 86.752 0.81134 83.023 82.553 83.364 -3.7289 36 16 3 0 0 0 0.99494 1 16498 16498 8.5933 0.68312 1 6220200 + 44278 13202 29430 29450 43615 43615 -0.030937690191422007 SYRDALRY 8 Unmodified _SYRDALRY_ 0 0 0 ENSG00000213047|ENST00000620048|DENND1B;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B ENSG00000213047|ENST00000620048|DENND1B ENSG00000213047|ENST00000620048|DENND1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27099609375 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 90.887 1 90.887 90.387 91.387 0 0 0 0 0.21486 1 17760 17760 8.5933 0 1 44279 7685 29431 29451 43616 43616 3.401640651645721E-05 SYRDALRY 8 Unmodified _SYRDALRY_ 0 0 0 ENSG00000213047|ENST00000620048|DENND1B;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B ENSG00000213047|ENST00000620048|DENND1B ENSG00000213047|ENST00000620048|DENND1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2661743164062 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 141.54 1 136.89 136.39 137.39 -4.6493 0 0 0 0.23025 1 27960 27960 0.62683 0 1 44280 7685 29431 29451 43617 43617 3.401640651645721E-05 SYRLRPRM 8 Unmodified _SYRLRPRM_ 0 0 0 REV__nc|ENSG00000135111|O15119-3|TBX3 REV__nc|ENSG00000135111|O15119-3|TBX3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20159912109375 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 71.073 1 67.824 67.324 68.324 -3.2492 0 0 0 0.21486 1 13834 13834 3.2813 0 1 + 44281 16247 29432 29452 43618 43618 0.05087733650748305 SYRPRTEQRKY 11 Unmodified _SYRPRTEQRKY_ 0 0 0 REV__ENSG00000138696|ENST00000515059|BMPR1B REV__ENSG00000138696|ENST00000515059|BMPR1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3887939453125 2 742.391856 1482.76916 NaN NaN NaN NaN NaN NaN NaN 126.69 1 121.99 121.49 122.49 -4.6998 0 0 0 0.23698 1 24369 24369 1.3295 0.13619 1 + 44282 16482 29433 29453 43619 43619 0.04708539526382083 SYRRKTLY 8 Unmodified _SYRRKTLY_ 0 0 0 ENST00000602063.5_1_19:52497291-52497378:-|nuORF;ENST00000395505.6_1_9:95609563-95609653:-|nuORF ENST00000602063.5_1_19:52497291-52497378:-|nuORF ENST00000602063.5_1_19:52497291-52497378:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7826538085938 2 543.806365 1085.59818 NaN NaN NaN NaN NaN NaN NaN 160.64 1 160.64 160.14 161.14 0 0 0 0 0.21486 1 32258 32258 11.64 0 1 44283 9430 29434 29454 43620 43620 0.05880253945770164 SYRRMLKRYNP 11 Unmodified _SYRRMLKRYNP_ 0 0 0 REV__ENSG00000147234|ENST00000683843|FRMPD3 REV__ENSG00000147234|ENST00000683843|FRMPD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4036254882812 2 742.40117 1482.78779 NaN NaN NaN NaN NaN NaN NaN 59.357 1 56.043 55.543 56.543 -3.3139 0 0 0 0.23698 1 11036 11036 1.3295 0 1 + 44284 16928 29435 29455 43621 43621 0.06570377896650825 SYRRRFNLEEV 11 Unmodified _SYRRRFNLEEV_ 0 0 0 ENSG00000167771|ENST00000301459|RCOR2;ENST00000489217.1_1_11:63679764-63680410:-|nuORF ENSG00000167771|ENST00000301459|RCOR2 ENSG00000167771|ENST00000301459|RCOR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2580871582031 3 490.26003 1467.75826 NaN NaN NaN NaN NaN NaN NaN 125.7 1 120.93 120.43 121.43 -4.7681 0 0 0 0.22632 1 24123 24123 0.03141 0 1 44285 5848 29436 29456 43622 43622 0.043091371521313704 SYRTRGEF 8 Unmodified _SYRTRGEF_ 0 0 0 REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55 REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 508.2808837890625 2 508.251423 1014.48829 0.18454 9.3792E-05 1.1225 0.00057052 1.3071 0.00066431 508.25356309194984 139.66 0.17407 134.81 134.7 134.88 -4.8492 6 4 2 0 0 0 8448 1 26937 26937 1.7423 1.1154 1 600720 + 44286 18909 29437 29457 43623 43623 -0.018371713934243417 SYRWRRRKRTR 11 Unmodified _SYRWRRRKRTR_ 0 0 0 REV__ENST00000433071.2_1_21:32931573-32932426:+|nuORF REV__ENST00000433071.2_1_21:32931573-32932426:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2792358398438 3 540.985457 1619.93454 0.059743 3.232E-05 -0.11392 -6.1628E-05 -0.054175 -2.9308E-05 540.9854319151931 103.88 0.16904 99.662 99.552 99.721 -4.2183 5 4 2 0 0 0 0.89134 1 20421 20421 0 0 1 486900 + 44287 21637 29438 29458 43624 43624 0.14937235896559287 SYRWRRRKRTR 11 Unmodified _SYRWRRRKRTR_ 0 0 0 REV__ENST00000433071.2_1_21:32931573-32932426:+|nuORF REV__ENST00000433071.2_1_21:32931573-32932426:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2821044921875 3 540.985457 1619.93454 0.37218 0.00020134 2.4783 0.0013407 2.8504 0.001542 540.9863282714781 126.07 0.1039 121.3 121.21 121.32 -4.7681 4 2 2 0 0 0 0.82531 1 24186 24186 0.073264 0.073264 1 558960 + 44288 21637 29438 29458 43625 43625 0.14937235896559287 SYSCSCDPGYY 11 Unmodified _SYSCSCDPGYY_ 0 0 0 CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2215Wfs*26|2|0.42|ENSG00000143126|chr1:109269115-109269115|C/-|frameshift_variant CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7529907226562 2 622.715364 1243.41618 NaN NaN NaN NaN NaN NaN NaN 130.81 1 126.04 125.54 126.54 -4.7725 0 0 0 0.23594 1 25180 25180 3.5965 0.8613 1 44289 480 29439 29459 43626 43626 -0.19579634644333055 SYSKIKHLRL 10 Unmodified _SYSKIKHLRL_ 0 0 0 ENSG00000139329|ENST00000266718|LUM;CON__Q05443 ENSG00000139329|ENST00000266718|LUM ENSG00000139329|ENST00000266718|LUM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7677001953125 2 622.877322 1243.74009 0.92133 0.00057387 -0.53364 -0.00033239 0.38769 0.00024148 622.8769717442574 59.212 0.66401 56.302 56.001 56.665 -2.9105 27 18 2 0 0 0 0.91149 1 11345 11345 6.7232 5.2413 1 2038600 + 44290 4240 29440 29460 43627 43627 0.12797046968057657 SYSNRSSASQ 10 Unmodified _SYSNRSSASQ_ 0 0 0 REV__ENST00000429979.5_2_13:46952026-46952128:-|nuORF REV__ENST00000429979.5_2_13:46952026-46952128:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7752685546875 2 543.744159 1085.47377 0.25831 0.00014046 1.0737 0.0005838 1.332 0.00072426 544.2463310982016 61.018 0.20862 57.79 57.661 57.87 -3.228 7 5 2 0 0 0 0.61964 1 11427 11427 18.146 0.011366 1 685360 + 44291 21124 29441 29461 43628 43628 -0.06555288332242526 SYSSIKYAY 9 Unmodified _SYSSIKYAY_ 0 0 0 REV__nc|ENSG00000243480|P04746-2|AMY2A REV__nc|ENSG00000243480|P04746-2|AMY2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2637939453125 2 541.263665 1080.51278 0.23557 0.0001275 -0.50553 -0.00027363 -0.26997 -0.00014612 541.2632871978684 79.016 0.98419 75.506 75.029 76.013 -3.5102 44 27 2 0 0 0 0.59384 1 15476 15476 13.508 0.97634 1 1142300 + + 44292 24291 29442 29462 43629 43629 -0.02425956030560883 SYSSIKYAY 9 Unmodified _SYSSIKYAY_ 0 0 0 REV__nc|ENSG00000243480|P04746-2|AMY2A REV__nc|ENSG00000243480|P04746-2|AMY2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2645874023438 2 541.263665 1080.51278 0.01516 8.2058E-06 0.052112 2.8206E-05 0.067273 3.6412E-05 541.2637370892986 79.385 0.94772 75.581 74.984 75.932 -3.8048 35 26 2 0 0 0 0.50294 1 15104 15104 19.439 6.9074 1 1213200 + + 44293 24291 29442 29462 43630 43630 -0.02425956030560883 SYSVMDSPKK 10 Unmodified _SYSVMDSPKK_ 0 0 0 nc|ENSG00000174796|Q8TBB0-2|THAP6;ENSG00000174796|ENST00000311638|THAP6 nc|ENSG00000174796|Q8TBB0-2|THAP6 nc|ENSG00000174796|Q8TBB0-2|THAP6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2097473144531 3 381.190113 1140.54851 NaN NaN NaN NaN NaN NaN NaN 97.78 1 97.78 97.28 98.28 0 0 0 0 0.22588 1 19163 19163 1.9064 0.71303 1 44294 6372 29443 29463 43631 43631 -0.01614241845209108 SYTEYIFFRPP 11 Unmodified _SYTEYIFFRPP_ 0 0 0 KCTD8|p.A396Hfs*39|2|0.35|ENSG00000183783|chr4:44175027-44175027|T/-|frameshift_variant;ENSG00000183783|ENST00000360029|KCTD8 KCTD8|p.A396Hfs*39|2|0.35|ENSG00000183783|chr4:44175027-44175027|T/-|frameshift_variant KCTD8|p.A396Hfs*39|2|0.35|ENSG00000183783|chr4:44175027-44175027|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 710.32080078125 2 710.350803 1418.68705 NaN NaN NaN NaN NaN NaN NaN 162.97 1 162.97 162.47 163.47 0 0 0 0 0.2367 1 32809 32809 2.9952 0.26005 1 44295 6870 29444 29464 43632 43632 -0.005543756052475146 SYTGDPYTHY 10 Unmodified _SYTGDPYTHY_ 0 0 0 REV__TIGIT|p.T119S|1|0.24|ENSG00000181847|chr3:114295839-114295839|C/G|missense_variant REV__TIGIT|p.T119S|1|0.24|ENSG00000181847|chr3:114295839-114295839|C/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.27587890625 2 602.251286 1202.48802 1.0471 0.00063061 -0.65058 -0.00039181 0.3965 0.00023879 602.2508488640804 61.395 0.58612 58.434 58.172 58.758 -2.9614 39 16 3 0 0 0 0.37773 1 11850 11850 32.305 3.8186 1 8618300 + 44296 24803 29445 29465 43633 43633 -0.10512635903955925 SYTGDPYTHY 10 Unmodified _SYTGDPYTHY_ 0 0 0 REV__TIGIT|p.T119S|1|0.24|ENSG00000181847|chr3:114295839-114295839|C/G|missense_variant REV__TIGIT|p.T119S|1|0.24|ENSG00000181847|chr3:114295839-114295839|C/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2722778320312 2 602.251286 1202.48802 0.27245 0.00016409 0.47001 0.00028306 0.74246 0.00044715 602.251535966866 61.591 0.62222 58.351 58.034 58.656 -3.2395 43 17 3 0 0 0 0.37773 2 11502 11476;11502 32.305 5.4218 1 6077300 + 44297 24803 29445 29465 43634;43635 43635 -0.10512635903955925 SYTGDPYTHY 10 Unmodified _SYTGDPYTHY_ 0 0 0 REV__TIGIT|p.T119S|1|0.24|ENSG00000181847|chr3:114295839-114295839|C/G|missense_variant REV__TIGIT|p.T119S|1|0.24|ENSG00000181847|chr3:114295839-114295839|C/G|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 602.251286 1202.48802 1.0471 0.00063061 -0.65058 -0.00039181 0.3965 0.00023879 602.2508488640804 61.395 0.58612 58.434 58.172 58.758 -2.9614 0.024582 -0.00084827 NaN 32.305 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 8618300 + 44298 24803 29445 29465 -0.10512635903955925 SYTGDPYTHY 10 Unmodified _SYTGDPYTHY_ 0 0 0 REV__TIGIT|p.T119S|1|0.24|ENSG00000181847|chr3:114295839-114295839|C/G|missense_variant REV__TIGIT|p.T119S|1|0.24|ENSG00000181847|chr3:114295839-114295839|C/G|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 602.251286 1202.48802 0.46333 0.00027904 0.095014 5.7223E-05 0.55834 0.00033626 602.2513313076471 61.812 0.59524 58.443 58.112 58.707 -3.3694 0.033363 4.98E-05 NaN 32.305 47 16 4 NaN NaN NaN NaN 0 NaN NaN 0 6161600 + 44299 24803 29445 29465 -0.10512635903955925 SYTGDPYTHY 10 Unmodified _SYTGDPYTHY_ 0 0 0 REV__TIGIT|p.T119S|1|0.24|ENSG00000181847|chr3:114295839-114295839|C/G|missense_variant REV__TIGIT|p.T119S|1|0.24|ENSG00000181847|chr3:114295839-114295839|C/G|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 602.251286 1202.48802 0.27245 0.00016409 0.47001 0.00028306 0.74246 0.00044715 602.251535966866 61.591 0.62222 58.351 58.034 58.656 -3.2395 -0.057945 0.00050148 NaN 32.305 43 17 3 NaN NaN NaN NaN 0 NaN NaN 0 6077300 + 44300 24803 29445 29465 -0.10512635903955925 SYTLSHKET 9 Unmodified _SYTLSHKET_ 0 0 0 REV__ENST00000506258.2_1_5:14610455-14614889:+|nuORF REV__ENST00000506258.2_1_5:14610455-14614889:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2633666992188 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 151.21 1 151.21 150.71 151.71 0 0 0 0 0.22251 1 30280 30280 16.942 3.0362 1 + 44301 22487 29446 29466 43636 43636 -0.015837416616705013 SYTQTKDWFAL 11 Unmodified _SYTQTKDWFAL_ 0 0 0 ENST00000520923.5_1_8:101051146-101092499:-|nuORF;RGS22|p.K914Nfs*18|3|0.3|ENSG00000132554|chr8:100002250-100002250|T/-|frameshift_variant;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;nc|ENSG00000132554|Q8NE09-2|RGS22 ENST00000520923.5_1_8:101051146-101092499:-|nuORF ENST00000520923.5_1_8:101051146-101092499:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7686462402344 3 453.890832 1358.65067 0.20568 9.3358E-05 -2.2039 -0.0010003 -1.9982 -0.00090698 453.88989696901507 96.465 0.27827 96.465 96.32 96.598 0 10 7 2 0 0 0 0.77537 1 18876 18876 6.6235 0.75532 1 957040 44302 3742 29447 29467 43637 43637 -0.01431252501970448 SYTRLHKFQSE 11 Unmodified _SYTRLHKFQSE_ 0 0 0 REV__ENST00000534532.6_1_11:134054823-134055313:-|nuORF REV__ENST00000534532.6_1_11:134054823-134055313:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 466.221923828125 3 465.905364 1394.69426 -0.20285 -9.4507E-05 -0.12408 -5.7811E-05 -0.32693 -0.00015232 466.2397100343445 42.309 0.38617 39.59 39.347 39.733 -2.7191 14 10 2 0 0 0 0.65962 1 7935 7935 0.172 0 1 1626900 + 44303 22804 29448 29468 43638 43638 0.012703569951781901 SYTRLHKFQSE 11 Unmodified _SYTRLHKFQSE_ 0 0 0 REV__ENST00000534532.6_1_11:134054823-134055313:-|nuORF REV__ENST00000534532.6_1_11:134054823-134055313:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 465.905364 1394.69426 0.24903 0.00011603 0.13278 6.1863E-05 0.38181 0.00017789 466.23990527925065 39.485 0.51388 39.485 39.201 39.715 0 -0.075148 0.0004425 NaN 0.172 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1479100 + 44304 22804 29448 29468 0.012703569951781901 SYTRLHKFQSE 11 Unmodified _SYTRLHKFQSE_ 0 0 0 REV__ENST00000534532.6_1_11:134054823-134055313:-|nuORF REV__ENST00000534532.6_1_11:134054823-134055313:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 465.905364 1394.69426 -0.20285 -9.4507E-05 -0.12408 -5.7811E-05 -0.32693 -0.00015232 466.2397100343445 42.309 0.38617 39.59 39.347 39.733 -2.7191 0.029188 8.3475E-05 NaN 0.172 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1626900 + 44305 22804 29448 29468 0.012703569951781901 SYTRLHKFQSE 11 Unmodified _SYTRLHKFQSE_ 0 0 0 REV__ENST00000534532.6_1_11:134054823-134055313:-|nuORF REV__ENST00000534532.6_1_11:134054823-134055313:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 465.905364 1394.69426 -0.09789 -4.5608E-05 -0.0078138 -3.6405E-06 -0.1057 -4.9248E-05 465.90523539766616 42.179 0.4201 39.528 39.39 39.811 -2.651 -0.0322 0.00024599 NaN 0.172 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1179600 + 44306 22804 29448 29468 0.012703569951781901 SYTRLHKFQSE 11 Unmodified _SYTRLHKFQSE_ 0 0 0 REV__ENST00000534532.6_1_11:134054823-134055313:-|nuORF REV__ENST00000534532.6_1_11:134054823-134055313:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 465.905364 1394.69426 0.017951 8.3633E-06 -0.61224 -0.00028525 -0.59429 -0.00027688 465.9050142081544 42.245 0.35644 39.639 39.36 39.716 -2.606 0.078161 -0.00059883 NaN 0.172 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1146700 + 44307 22804 29448 29468 0.012703569951781901 SYTSTVIC 8 Unmodified _SYTSTVIC_ 0 0 0 REV__nc|ENSG00000205940|Q58FF8|HSP90AB2P REV__nc|ENSG00000205940|Q58FF8|HSP90AB2P MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2156982421875 2 437.204761 872.394969 NaN NaN NaN NaN NaN NaN NaN 157.38 1 152.59 152.09 153.09 -4.7885 0 0 0 0.21486 1 31299 31299 2.8892 0 1 + 44308 24245 29449 29469 43639 43639 -0.046332318908980596 SYVAWDREKR 10 Unmodified _SYVAWDREKR_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2268371582031 3 437.226438 1308.65748 NaN NaN NaN NaN NaN NaN NaN 23.456 1 21.903 21.403 22.403 -1.5532 0 0 0 2.8426 1 4047 4047 1.9064 1.8931 1 44309 7917 29450 29470 43640 43640 0.015501051692581314 SYVEIWRRKRW 11 Unmodified _SYVEIWRRKRW_ 0 0 0 REV__ENSG00000115548|ENST00000312912|KDM3A REV__ENSG00000115548|ENST00000312912|KDM3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 526.9614868164062 3 526.959915 1577.85791 NaN NaN NaN NaN NaN NaN NaN 163.65 1 163.65 163.15 164.15 0 0 0 0 0.23698 1 33002 33002 0.40827 0.32491 1 + 44310 15438 29451 29471 43641 43641 0.09209999556719595 SYVLIPAAQ 9 Unmodified _SYVLIPAAQ_ 0 0 0 ENSG00000184925|ENST00000371633|LCN12 ENSG00000184925|ENST00000371633|LCN12 ENSG00000184925|ENST00000371633|LCN12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2542724609375 2 481.271293 960.528032 0.037653 1.8121E-05 0.74297 0.00035757 0.78063 0.00037569 481.27163721412944 65.895 0.74491 62.848 62.446 63.191 -3.047 41 21 3 0 0 0 0.31714 1 12795 12795 30.637 8.8899 1 2511500 44311 6943 29452 29472 43642 43642 0.04618955557270965 SYWHGGYDYL 10 Unmodified _SYWHGGYDYL_ 0 0 0 nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT;nc|ENSG00000054392|Q5VTY9-4|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.770263671875 2 630.769645 1259.52474 NaN NaN NaN NaN NaN NaN NaN 45.465 1 42.599 42.099 43.099 -2.8666 0 0 0 2.8426 1 8252 8252 0.043787 0 1 44312 1263 29453 29473 43643 43643 -0.09464339287387702 SYYILSKNV 9 Unmodified _SYYILSKNV_ 0 0 0 REV__ENST00000463632.1_1_7:7678661-7680452:-|nuORF REV__ENST00000463632.1_1_7:7678661-7680452:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7946166992188 2 543.795132 1085.57571 0.33006 0.00017948 -0.76609 -0.0004166 -0.43603 -0.00023711 543.7947577454911 96.936 0.66383 96.936 96.563 97.227 0 27 18 2 0 0 0 0.52396 2 19023 19023;19038 18.146 1.2041 1 1863200 + 44313 21911 29454 29474 43644;43645 43644 0.036346097574551095 SYYILSKNV 9 Unmodified _SYYILSKNV_ 0 0 0 REV__ENST00000463632.1_1_7:7678661-7680452:-|nuORF REV__ENST00000463632.1_1_7:7678661-7680452:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7952880859375 2 543.795132 1085.57571 0.24293 0.0001321 0.05027 2.7337E-05 0.2932 0.00015944 543.7951375762208 101.1 0.59512 96.936 96.529 97.125 -4.1594 27 16 2 0 0 0 0.19311 1 19866 19866 37.974 9.4795 1 1742800 + 44314 21911 29454 29474 43646 43646 0.036346097574551095 TAAAAAEHSQ 10 Unmodified _TAAAAAEHSQ_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72711181640625 2 478.725238 955.435923 0.44814 0.00021454 -0.37871 -0.0001813 0.069434 3.324E-05 478.72505362028545 30.822 1.3641 28.705 27.634 28.998 -2.1167 57 38 2 0 0 0 0.46962 1 5607 5607 1.9275 0 1 893010 44315 2466 29455 29475 43647 43647 -0.04357754527052293 TAAACSSPAA 10 Unmodified _TAAACSSPAA_ 0 0 0 ENST00000437972.1_2_3:48229358-48229863:-|nuORF ENST00000437972.1_2_3:48229358-48229863:-|nuORF ENST00000437972.1_2_3:48229358-48229863:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.23590087890625 2 425.192185 848.369817 NaN NaN NaN NaN NaN NaN NaN 33.777 1 33.777 33.277 34.277 0 0 0 0 0.22588 1 6173 6173 6.7232 0.51738 1 44316 9858 29456 29476 43648 43648 -0.06043286693466143 TAAAMIEQ 8 Unmodified _TAAAMIEQ_ 0 0 0 REV__ENST00000470474.1_1_3:11314090-11340334:+|nuORF REV__ENST00000470474.1_1_3:11314090-11340334:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 417.2296447753906 2 417.704928 833.395304 -0.13619 -5.6888E-05 0.71188 0.00029736 0.57569 0.00024047 417.7050223864874 80.205 0.77821 76.694 76.33 77.108 -3.5102 29 21 2 0 0 0 0.71273 1 15636 15636 12.532 0 1 982010 + 44317 22031 29457 29477 43649 43649 -0.028058121710273554 TAAAPIISSV 10 Unmodified _TAAAPIISSV_ 0 0 0 ENSG00000112367|ENST00000230124|FIG4 ENSG00000112367|ENST00000230124|FIG4 ENSG00000112367|ENST00000230124|FIG4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2492370605469 2 465.26875 928.522947 -0.10602 -4.9328E-05 -0.5334 -0.00024818 -0.63942 -0.0002975 465.26836545118334 57.459 0.94323 57.459 56.951 57.894 0 42 26 2 0 0 0 0.54036 1 10981 10981 24.021 10.115 1 1556900 44318 2693 29458 29478 43650 43650 0.05582651694658125 TAAAQQLDP 9 Unmodified _TAAAQQLDP_ 0 0 0 nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-5|RTEL1;ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;ENST00000496816.5_1_20:62325699-62327208:+|nuORF;ENST00000496281.1_1_20:62323608-62327208:+|nuORF nc|ENSG00000258366|Q9NZ71-2|RTEL1 nc|ENSG00000258366|Q9NZ71-2|RTEL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2418518066406 2 457.732532 913.45051 -0.043188 -1.9768E-05 0.10181 4.6604E-05 0.058627 2.6835E-05 457.732552595794 39.811 0.80859 37.271 36.831 37.64 -2.5398 68 22 4 0 0 0 0.79204 1 7033 7033 3.9444 0 1 25860000 44319 12634 29459 29479 43651 43651 -0.009676823789163791 TAAARLVPLEY 11 Unmodified _TAAARLVPLEY_ 0 0 0 REV__ENST00000312637.4_1_5:99871039-99871213:+|nuORF REV__ENST00000312637.4_1_5:99871039-99871213:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.298828125 2 602.340238 1202.66592 NaN NaN NaN NaN NaN NaN NaN 78.977 1 75.173 74.673 75.673 -3.8048 0 0 0 0.22943 1 14980 14980 8.7454 2.0222 1 + 44320 20499 29460 29480 43652 43652 0.07269659085909552 TAAASLVAGL 10 Unmodified _TAAASLVAGL_ 0 0 0 REV__nc|ENSG00000064201|Q96QS1-4|TSPAN32 REV__nc|ENSG00000064201|Q96QS1-4|TSPAN32 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2286071777344 2 437.255643 872.496732 0.30726 0.00013435 -0.15324 -6.7003E-05 0.15402 6.7348E-05 437.25543409655506 29.792 0.55847 27.9 27.685 28.243 -1.8928 23 15 3 0 0 0 0.871 1 5126 5126 10.074 1.4806 1 606600 + 44321 14164 29461 29481 43653 43653 0.055383825231729134 TAACELRAMT 10 Unmodified _TAACELRAMT_ 0 0 0 REV__LRIG1|p.H868Qfs*44|1|0.18|ENSG00000144749|chr3:66382276-66382286|TGCTCTCAATG/-|frameshift_variant REV__LRIG1|p.H868Qfs*44|1|0.18|ENSG00000144749|chr3:66382276-66382286|TGCTCTCAATG/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2678833007812 2 533.754627 1065.4947 0.56524 0.0003017 -3.5308 -0.0018846 -2.9656 -0.0015829 534.2551666306902 85.355 0.3803 81.446 81.289 81.67 -3.9093 13 10 2 0 0 0 0.86078 1 16237 16237 12.241 2.8932 1 875250 + 44322 16801 29462 29482 43654 43654 -0.035427375485824086 TAADILDR 8 Unmodified _TAADILDR_ 0 0 0 nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.N1793Kfs*14|1|0.21|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant;FAT3|p.V1884Sfs*21|1|0.26|ENSG00000165323|chr11:92799110-92799110|G/-|frameshift_variant;FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant;FAT3|p.P4078Rfs*36|1|0.42|ENSG00000165323|chr11:92883135-92883135|C/-|frameshift_variant;FAT3|p.V4210Cfs*6|1|0.05|ENSG00000165323|chr11:92889212-92889213|-/T|frameshift_variant;FAT3|p.F1046Lfs*9|1|0.5|ENSG00000165323|chr11:92524923-92524923|T/-|frameshift_variant;FAT3|p.A1047Cfs*51|2|0.18|ENSG00000165323|chr11:92524922-92524923|-/T|frameshift_variant;nc|ENSG00000165323|Q8TDW7-2|FAT3 nc|ENSG00000165323|Q8TDW7|FAT3 nc|ENSG00000165323|Q8TDW7|FAT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21826171875 2 437.735074 873.455596 0.37279 0.00016318 -0.46105 -0.00020182 -0.088261 -3.8635E-05 437.7350060538617 30.216 0.31755 28.099 27.941 28.259 -2.1167 13 8 2 0 0 0 0.99494 1 5425 5425 13.508 2.3934 1 402510 44323 5619 29463 29483 43655 43655 0.01380621483701816 TAADWPEM 8 Unmodified _TAADWPEM_ 0 0 0 ENSG00000171487|ENST00000390649|NLRP5;NLRP5|p.T265M|1|0.09|ENSG00000171487|chr19:56027027-56027027|C/T|missense_variant;NLRP5|p.Q264H|1|0.55|ENSG00000171487|chr19:56027025-56027025|A/T|missense_variant ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2414855957031 2 460.694561 919.374568 0.25481 0.00011739 -1.2648 -0.00058267 -1.01 -0.00046529 460.6936435432926 28.022 0.66542 26.025 25.644 26.31 -1.9962 24 18 2 0 0 0 1.0011 1 4751 4751 7.9102 7.9102 1 806120 44324 6147 29464 29484 43656 43656 -0.08834402550689902 TAAGGFPYR 9 Unmodified _TAAGGFPYR_ 0 0 0 ENST00000598304.5_1_19:40170059-40172766:+|nuORF ENST00000598304.5_1_19:40170059-40172766:+|nuORF ENST00000598304.5_1_19:40170059-40172766:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 470.27520751953125 2 470.237784 938.461016 NaN NaN NaN NaN NaN NaN NaN 66.417 1 63.37 62.87 63.87 -3.047 0 0 0 0.23508 1 12869 12869 11.64 0 1 44325 11683 29465 29485 43657 43657 -0.010676549338199948 TAAGIINLTG 10 Unmodified _TAAGIINLTG_ 0 0 0 nc|ENSG00000165186|Q96NR3-3|PTCHD1;PTCHD1|p.N608Ifs*6|1|0.24|ENSG00000165186|chrX:23393337-23393337|A/-|frameshift_variant;nc|ENSG00000165186|Q96NR3-2|PTCHD1;PTCHD1|p.N789Mfs*8|1|0.33|ENSG00000165186|chrX:23393879-23393879|A/-|frameshift_variant;ENSG00000165186|ENST00000379361|PTCHD1 nc|ENSG00000165186|Q96NR3-3|PTCHD1 nc|ENSG00000165186|Q96NR3-3|PTCHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2386779785156 2 465.766374 929.518196 -0.041785 -1.9462E-05 -1.7523 -0.00081615 -1.7941 -0.00083561 465.7664115151981 40.215 0.31561 37.675 37.429 37.745 -2.5398 11 8 2 0 0 0 0.85223 1 7175 7175 2.7352 0 1 496050 44326 5604 29466 29486 43658 43658 0.050617675518992655 TAAIAEVAK 9 Unmodified _TAAIAEVAK_ 0 0 0 ENST00000484389.6_1_13:61058882-61083684:+|nuORF;TDRD3|p.R406Kfs*3|1|0.3|ENSG00000083544|chr13:60528713-60528714|-/A|frameshift_variant;nc|ENSG00000083544|Q9H7E2-2|TDRD3;nc|ENSG00000083544|Q9H7E2|TDRD3;ENSG00000083544|ENST00000377881|TDRD3 ENST00000484389.6_1_13:61058882-61083684:+|nuORF ENST00000484389.6_1_13:61058882-61083684:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21533203125 2 437.255643 872.496732 0.37179 0.00016257 -0.54503 -0.00023832 -0.17324 -7.575E-05 437.2554310142187 29.944 0.52236 27.869 27.624 28.146 -2.0743 20 14 3 0 0 0 0.55979 1 5153 5153 15.847 3.3156 1 636510 44327 1656 29467 29487 43659 43659 0.05538382523184282 TAAKRAPLL 9 Unmodified _TAAKRAPLL_ 0 0 0 REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1811828613281 3 314.202793 939.58655 0.27546 8.6552E-05 -0.2783 -8.7442E-05 -0.0028339 -8.9042E-07 314.2026639803666 32.002 0.55726 29.976 29.73 30.287 -2.0264 45 15 4 0 0 0 0.72996 1 5496 5496 4.897 0 1 5084000 + 44328 22717 29468 29488 43660 43660 0.11434056922405489 TAAKRAPLL 9 Unmodified _TAAKRAPLL_ 0 0 0 REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 314.202793 939.58655 -0.45298 -0.00014233 0.56489 0.00017749 0.11191 3.5162E-05 314.2029157727384 30.071 0.56038 30.071 29.749 30.31 0 0.079761 0.00032154 NaN 4.897 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4185300 + 44329 22717 29468 29488 0.11434056922405489 TAAKRAPLL 9 Unmodified _TAAKRAPLL_ 0 0 0 REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 314.202793 939.58655 -0.077349 -2.4303E-05 0.15036 4.7242E-05 0.073007 2.2939E-05 314.2027851652502 32.155 0.56719 29.924 29.657 30.224 -2.2305 -0.067113 -6.92E-05 NaN 4.897 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4889200 + 44330 22717 29468 29488 0.11434056922405489 TAAKRAPLL 9 Unmodified _TAAKRAPLL_ 0 0 0 REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 314.202793 939.58655 0.27546 8.6552E-05 -0.2783 -8.7442E-05 -0.0028339 -8.9042E-07 314.2026639803666 32.002 0.55726 29.976 29.73 30.287 -2.0264 -0.015613 -0.00047325 NaN 4.897 45 15 4 NaN NaN NaN NaN 0 NaN NaN 0 5084000 + 44331 22717 29468 29488 0.11434056922405489 TAAKRAPLL 9 Unmodified _TAAKRAPLL_ 0 0 0 REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 314.202793 939.58655 -0.22094 -6.9419E-05 0.4483 0.00014086 0.22736 7.1436E-05 314.202871260317 32.143 0.6615 29.994 29.654 30.316 -2.1483 0.0029644 0.00021164 NaN 4.897 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4938200 + 44332 22717 29468 29488 0.11434056922405489 TAAKSVGER 9 Unmodified _TAAKSVGER_ 0 0 0 REV__ENST00000393389.7_1_11:82905209-82905431:+|nuORF REV__ENST00000393389.7_1_11:82905209-82905431:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2398376464844 2 459.753798 917.493044 -0.18589 -8.5463E-05 2.496 0.0011476 2.3101 0.0010621 459.7559099577473 81.62 0.90397 77.932 77.214 78.118 -3.6879 36 25 2 0 0 0 0.6329 1 15434 15434 10.824 0 1 1086900 + 44333 21236 29469 29489 43661 43661 0.030997127493378684 TAAKTRRLFKA 11 Unmodified _TAAKTRRLFKA_ 0 0 0 REV__MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant REV__MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 631.8078002929688 2 631.888221 1261.76189 NaN NaN NaN NaN NaN NaN NaN 45.826 1 42.961 42.461 43.461 -2.8653 0 0 0 0.23324 1 8320 8320 5.7319 2.7366 1 + 44334 19344 29470 29490 43662 43662 0.14147851716620607 TAAKVKEV 8 Unmodified _TAAKVKEV_ 0 0 0 nc|ENSG00000186439|Q13061-2|TRDN;TRDN|p.P386Tfs*34|1|0.13|ENSG00000186439|chr6:123382127-123382128|-/T|frameshift_variant;TRDN|p.E519Gfs*9|1|0.07|ENSG00000186439|chr6:123278331-123278332|-/T|frameshift_variant;TRDN|p.V538Cfs*8|1|0.28|ENSG00000186439|chr6:123273350-123273350|T/-|frameshift_variant;TRDN|p.T573Nfs*11|1|0.39|ENSG00000186439|chr6:123271141-123271142|-/T|frameshift_variant;TRDN|p.E606Sfs*14|1|0.05|ENSG00000186439|chr6:123260627-123260628|-/CCAAAAGGCT|frameshift_variant;ENSG00000186439|ENST00000334268|TRDN nc|ENSG00000186439|Q13061-2|TRDN nc|ENSG00000186439|Q13061-2|TRDN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 424.2625427246094 2 423.258185 844.501818 -0.12989 -5.4977E-05 0.36858 0.00015601 0.23869 0.00010103 423.2582840877036 27.27 0.81098 25.348 25.122 25.933 -1.9222 58 22 3 0 0 0 8448 1 4548 4548 33.593 0 1 15539000 44335 7057 29471 29491 43663 43663 0.07334686385809164 TAAKVRGK 8 Unmodified _TAAKVRGK_ 0 0 0 ENST00000468619.5_1_11:70515690-70672680:-|nuORF ENST00000468619.5_1_11:70515690-70672680:-|nuORF ENST00000468619.5_1_11:70515690-70672680:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.7644348144531 2 415.763969 829.513385 NaN NaN NaN NaN NaN NaN NaN 137.84 1 137.84 137.34 138.34 0 0 0 0 0.23749 1 27353 27353 0.0082765 0 1 44336 10172 29472 29492 43664 43664 0.09180928199805294 TAALDHPPTTQ 11 Unmodified _TAALDHPPTTQ_ 0 0 0 REV__nc|ENSG00000146842|Q96SK2-4|TMEM209 REV__nc|ENSG00000146842|Q96SK2-4|TMEM209 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.315185546875 2 576.288202 1150.56185 -0.030485 -1.7568E-05 -0.040095 -2.3106E-05 -0.07058 -4.0674E-05 576.2883512119017 46.861 0.76078 44.02 43.728 44.489 -2.8409 42 21 3 0 0 0 0.51025 1 8800 8800 22.658 2.2045 1 14483000 + 44337 16905 29473 29493 43665 43665 -0.0074066774163839 TAALQKEL 8 Unmodified _TAALQKEL_ 0 0 0 ENSG00000101425|ENST00000642449|BPI;nc|ENSG00000101425|P17213|BPI ENSG00000101425|ENST00000642449|BPI ENSG00000101425|ENST00000642449|BPI MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2268371582031 2 437.255643 872.496732 0.37179 0.00016257 -0.54503 -0.00023832 -0.17324 -7.575E-05 437.2554310142187 29.944 0.52236 27.869 27.624 28.146 -2.0743 20 14 3 0 0 0 0.73936 1 5146 5146 8.5933 0 1 636510 44338 2066 29474 29494 43666 43666 0.055383825231729134 TAALRRAPP 9 Unmodified _TAALRRAPP_ 0 0 0 REV__ENST00000374825.8_1_6:32939382-32940003:+|nuORF REV__ENST00000374825.8_1_6:32939382-32940003:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.22760009765625 3 318.194409 951.561398 NaN NaN NaN NaN NaN NaN NaN 34.279 1 32.063 31.563 32.563 -2.2158 0 0 0 0.23508 1 6002 6002 2.7352 0 1 + 44339 21059 29475 29495 43667 43667 0.08368002119834728 TAAPLLTGY 9 Unmodified _TAAPLLTGY_ 0 0 0 REV__ENST00000490491.5_2_1:156203516-156212950:+|nuORF REV__ENST00000490491.5_2_1:156203516-156212950:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.75091552734375 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 35.374 1 35.374 34.874 35.874 0 0 0 0 0.23508 1 6492 6492 12.532 0 1 + 44340 22304 29476 29496 43668 43668 0.029309801489034726 TAAPSPCRL 9 Unmodified _TAAPSPCRL_ 0 0 0 IRS1|p.P368Rfs*95|1|0.18|ENSG00000169047|chr2:226797636-226797636|G/-|frameshift_variant IRS1|p.P368Rfs*95|1|0.18|ENSG00000169047|chr2:226797636-226797636|G/-|frameshift_variant IRS1|p.P368Rfs*95|1|0.18|ENSG00000169047|chr2:226797636-226797636|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2390441894531 2 458.23947 914.464386 0.42832 0.00019627 -1.8401 -0.00084319 -1.4117 -0.00064692 458.23840926846736 50.558 0.20279 50.558 50.438 50.641 0 9 5 3 0 0 0 0.52414 1 9578 9578 18.135 1.1927 1 271500 44341 11954 29477 29497 43669 43669 0.003732718485366604 TAAPTPDQSPP 11 Unmodified _TAAPTPDQSPP_ 0 0 0 REV__nc|ENSG00000138162|O95359-2|TACC2 REV__nc|ENSG00000138162|O95359-2|TACC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2617797851562 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 29.289 1 27.396 26.896 27.896 -1.8928 0 0 0 0.21872 1 4976 4976 14.405 1.8738 1 + 44342 16444 29478 29498 43670 43670 -0.028280455243020697 TAAPYPTPP 9 Unmodified _TAAPYPTPP_ 0 0 0 ZNF469|p.D3286Tfs*124|1|0.31|ENSG00000225614|chr16:88437405-88437405|C/-|frameshift_variant;ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant;ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant;ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant;ZNF469|p.R3818Gfs*95|1|0.46|ENSG00000225614|chr16:88439000-88439000|C/-|frameshift_variant;ENSG00000225614|ENST00000565624|ZNF469;ZNF469|p.L482Cfs*20|1|0.58|ENSG00000225614|chr16:88428909-88428909|C/-|frameshift_variant;ZNF469|p.H655Tfs*77|1|0.31|ENSG00000225614|chr16:88429427-88429427|C/-|frameshift_variant;ZNF469|p.H655Pfs*83|1|0.27|ENSG00000225614|chr16:88429426-88429427|-/C|frameshift_variant;ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant;ZNF469|p.I1874Yfs*24|1|0.39|ENSG00000225614|chr16:88433167-88433167|C/-|frameshift_variant;ZNF469|p.Q2396Kfs*49|1|0.23|ENSG00000225614|chr16:88434735-88434735|C/-|frameshift_variant ZNF469|p.D3286Tfs*124|1|0.31|ENSG00000225614|chr16:88437405-88437405|C/-|frameshift_variant ZNF469|p.D3286Tfs*124|1|0.31|ENSG00000225614|chr16:88437405-88437405|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2246398925781 2 457.734543 913.454533 -0.048503 -2.2201E-05 2.76 0.0012634 2.7115 0.0012412 457.73582751935857 54.006 0.103 50.868 50.783 50.886 -3.1377 4 2 2 0 0 0 0.72864 1 9982 9982 11.64 6.8843 1 298720 44343 7786 29479 29499 43671 43671 -0.005655928851979297 TAARAAAPGAA 11 Unmodified _TAARAAAPGAA_ 0 0 0 TNXB|p.G314Afs*257|1|0.07|ENSG00000168477|chr6:32096912-32096912|C/-|frameshift_variant TNXB|p.G314Afs*257|1|0.07|ENSG00000168477|chr6:32096912-32096912|C/-|frameshift_variant TNXB|p.G314Afs*257|1|0.07|ENSG00000168477|chr6:32096912-32096912|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25714111328125 2 464.253966 926.493378 1.0083 0.0004681 -0.46871 -0.0002176 0.53956 0.00025049 464.2534634555402 26.518 0.78966 24.736 24.483 25.272 -1.7821 44 22 4 0 0 0 0.68099 1 4671 4671 13.042 0 1 3744300 44344 25869 29480 29500 43672 43672 0.02719132469167107 TAARAAAPGAA 11 Unmodified _TAARAAAPGAA_ 0 0 0 TNXB|p.G314Afs*257|1|0.07|ENSG00000168477|chr6:32096912-32096912|C/-|frameshift_variant TNXB|p.G314Afs*257|1|0.07|ENSG00000168477|chr6:32096912-32096912|C/-|frameshift_variant TNXB|p.G314Afs*257|1|0.07|ENSG00000168477|chr6:32096912-32096912|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23638916015625 2 464.253966 926.493378 0.1032 4.7911E-05 0.65481 0.000304 0.75801 0.00035191 464.253894989852 26.37 0.69917 24.735 24.548 25.247 -1.6347 33 19 3 0 0 0 0.68099 1 4360 4360 13.042 0 1 1865600 44345 25869 29480 29500 43673 43673 0.02719132469167107 TAARPAPPLVM 11 Unmodified _TAARPAPPLVM_ 0 0 0 ENST00000320583.9_3_7:99156274-99158253:+|nuORF ENST00000320583.9_3_7:99156274-99158253:+|nuORF ENST00000320583.9_3_7:99156274-99158253:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2126770019531 3 375.214593 1122.62195 NaN NaN NaN NaN NaN NaN NaN 38.54 1 36.098 35.598 36.598 -2.4419 0 0 0 0.23491 1 6861 6861 4.4062 0.52982 1 44346 8712 29481 29501 43674 43674 0.06554351387921997 TAARPRRASR 10 Unmodified _TAARPRRASR_ 0 0 0 ENST00000568202.5_1_16:5075546-5083878:-|nuORF ENST00000568202.5_1_16:5075546-5083878:-|nuORF ENST00000568202.5_1_16:5075546-5083878:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2157897949219 3 381.226883 1140.65882 NaN NaN NaN NaN NaN NaN NaN 20.119 1 18.723 18.223 19.223 -1.3966 0 0 0 0.22588 1 3348 3348 2.8433 0 1 44347 11394 29482 29502 43675 43675 0.09411784048688787 TAARVTINIAK 11 Unmodified _TAARVTINIAK_ 0 0 0 REV__nc|ENSG00000113721|P09619-2|PDGFRB REV__nc|ENSG00000113721|P09619-2|PDGFRB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 578.8915405273438 2 579.35368 1156.69281 0.11314 6.5545E-05 3.6328 0.0021047 3.7459 0.0021702 579.8566841739967 18.728 0.51609 17.417 17.177 17.693 -1.3109 17 14 2 0 0 0 0.96175 1 3046 3046 0.26902 0 1 310650 + 44348 24005 29483 29503 43676 43676 0.12072767697077325 TAARVTINIAK 11 Unmodified _TAARVTINIAK_ 0 0 0 REV__nc|ENSG00000113721|P09619-2|PDGFRB REV__nc|ENSG00000113721|P09619-2|PDGFRB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 579.35368 1156.69281 -0.16192 -9.3807E-05 4.2473 0.0024607 4.0854 0.0023669 579.3562197973079 19.129 0.46198 17.804 17.469 17.931 -1.3251 0.19367 0.00023473 NaN 1.0715 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 306700 + 44349 24005 29483 29503 0.12072767697077325 TAASATRP 8 Unmodified _TAASATRP_ 0 0 0 GFRA1|p.P177Rfs*68|1|0.28|ENSG00000151892|chr10:116125461-116125461|G/-|frameshift_variant GFRA1|p.P177Rfs*68|1|0.28|ENSG00000151892|chr10:116125461-116125461|G/-|frameshift_variant GFRA1|p.P177Rfs*68|1|0.28|ENSG00000151892|chr10:116125461-116125461|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7091369628906 2 387.70886 773.403166 NaN NaN NaN NaN NaN NaN NaN 23.947 1 22.158 21.658 22.658 -1.7886 0 0 0 0.21486 1 3875 3875 9.3474 0 1 44350 11846 29484 29504 43677 43677 0.007400831407608166 TAASFVGYSY 10 Unmodified _TAASFVGYSY_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2774047851562 2 533.248015 1064.48148 0.35532 0.00018947 -0.95753 -0.0005106 -0.60221 -0.00032113 533.7487224101305 82.257 0.4691 82.257 81.963 82.432 0 15 12 2 0 0 0 0.79872 1 16026 16026 19.257 1.1106 1 920420 44351 3765 29485 29505 43678 43678 -0.048185290646415524 TAASGYGTQNI 11 Unmodified _TAASGYGTQNI_ 0 0 0 ENST00000593345.1_1_19:50063189-50083776:-|nuORF;ENST00000601340.5_1_19:50061444-50083809:-|nuORF;ENST00000598820.5_1_19:50061979-50083776:-|nuORF;ENSG00000142546|ENST00000596358|NOSIP ENST00000593345.1_1_19:50063189-50083776:-|nuORF ENST00000593345.1_1_19:50063189-50083776:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2823486328125 2 541.759278 1081.504 0.32553 0.00017636 -0.14607 -7.9136E-05 0.17946 9.7223E-05 541.7591778985859 22.184 0.45362 22.184 21.945 22.398 0 24 12 3 0 0 0 0.89764 1 3702 3702 12.241 5.5175 1 2058000 44352 4426 29486 29506 43679 43679 -0.033489296670495605 TAASGYGTQNI 11 Unmodified _TAASGYGTQNI_ 0 0 0 ENST00000593345.1_1_19:50063189-50083776:-|nuORF;ENST00000601340.5_1_19:50061444-50083809:-|nuORF;ENST00000598820.5_1_19:50061979-50083776:-|nuORF;ENSG00000142546|ENST00000596358|NOSIP ENST00000593345.1_1_19:50063189-50083776:-|nuORF ENST00000593345.1_1_19:50063189-50083776:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.759278 1081.504 1.0609 0.00057477 -0.48492 -0.00026271 0.57602 0.00031206 541.7588565167537 23.608 0.34882 22.054 21.868 22.217 -1.5532 -0.010246 -0.00046815 NaN 12.241 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1070300 44353 4426 29486 29506 -0.033489296670495605 TAASGYGTQNI 11 Unmodified _TAASGYGTQNI_ 0 0 0 ENST00000593345.1_1_19:50063189-50083776:-|nuORF;ENST00000601340.5_1_19:50061444-50083809:-|nuORF;ENST00000598820.5_1_19:50061979-50083776:-|nuORF;ENSG00000142546|ENST00000596358|NOSIP ENST00000593345.1_1_19:50063189-50083776:-|nuORF ENST00000593345.1_1_19:50063189-50083776:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 541.759278 1081.504 -0.0029601 -1.6036E-06 0.51783 0.00028054 0.51487 0.00027894 541.7593622965868 23.529 0.28527 22.076 21.888 22.173 -1.4535 0.011036 0.00061835 NaN 12.241 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 626320 44354 4426 29486 29506 -0.033489296670495605 TAASGYGTQNI 11 Unmodified _TAASGYGTQNI_ 0 0 0 ENST00000593345.1_1_19:50063189-50083776:-|nuORF;ENST00000601340.5_1_19:50061444-50083809:-|nuORF;ENST00000598820.5_1_19:50061979-50083776:-|nuORF;ENSG00000142546|ENST00000596358|NOSIP ENST00000593345.1_1_19:50063189-50083776:-|nuORF ENST00000593345.1_1_19:50063189-50083776:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 541.759278 1081.504 -0.29175 -0.00015806 0.016891 9.1508E-06 -0.27486 -0.00014891 541.7592837177959 23.733 0.31119 21.944 21.773 22.084 -1.7886 -0.12061 7.5571E-05 NaN 12.241 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 457110 44355 4426 29486 29506 -0.033489296670495605 TAASPAVRHSP 11 Unmodified _TAASPAVRHSP_ 0 0 0 ENST00000486442.5_1_2:23865217-23865691:+|nuORF ENST00000486442.5_1_2:23865217-23865691:+|nuORF ENST00000486442.5_1_2:23865217-23865691:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7904052734375 2 547.291079 1092.56761 -0.20443 -0.00011188 1.9863 0.0010871 1.7819 0.0009752 547.2924122009214 106.91 0.31498 102.65 102.46 102.77 -4.2638 12 8 2 0 0 0 0.69278 1 21051 21051 12.241 2.1667 1 871060 44356 10455 29487 29507 43680 43680 0.025024755606864346 TAASTSTLPA 10 Unmodified _TAASTSTLPA_ 0 0 0 ENSG00000115884|ENST00000254351|SDC1 ENSG00000115884|ENST00000254351|SDC1 ENSG00000115884|ENST00000254351|SDC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2403259277344 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 25.858 1 24.223 23.723 24.723 -1.6347 0 0 0 2.8426 1 4269 4269 0.51642 0.13683 1 44357 2890 29488 29508 43681 43681 0.0033318441827532297 TAASVLWFVW 10 Unmodified _TAASVLWFVW_ 0 0 0 REV__ENSG00000179292|ENST00000327259|TMEM151A REV__ENSG00000179292|ENST00000327259|TMEM151A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.259765625 2 590.313492 1178.61243 NaN NaN NaN NaN NaN NaN NaN 50.784 1 47.739 47.239 48.239 -3.0453 0 0 0 0.22588 1 9312 9312 6.7232 1.9672 1 + 44358 18650 29489 29509 43682 43682 0.03026906374043392 TAASVPTPTA 10 Unmodified _TAASVPTPTA_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2223205566406 2 458.242732 914.470912 0.22735 0.00010418 0.15335 7.0271E-05 0.3807 0.00017445 458.2426503725637 37.418 0.59328 35.081 34.663 35.256 -2.3375 24 16 2 0 0 0 0.29353 1 6598 6598 37.974 1.4678 1 762080 44359 1969 29490 29510 43683 43683 0.010254882809022092 TAATKVYGVI 10 Unmodified _TAATKVYGVI_ 0 0 0 REV__nc|ENSG00000137210|Q9NUH8-2|TMEM14B REV__nc|ENSG00000137210|Q9NUH8-2|TMEM14B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.0167236328125 3 341.534209 1021.5808 -0.72777 -0.00024856 0.59992 0.00020489 -0.12784 -4.3663E-05 341.53442098279595 16.138 0.45514 14.922 14.727 15.182 -1.2159 40 12 5 0 0 0 0.91149 1 2577 2577 3.5871 0 1 49949000 + 44360 24056 29491 29511 43684 43684 0.07086913620082669 TAATKVYGVI 10 Unmodified _TAATKVYGVI_ 0 0 0 REV__nc|ENSG00000137210|Q9NUH8-2|TMEM14B REV__nc|ENSG00000137210|Q9NUH8-2|TMEM14B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.0176086425781 3 341.534209 1021.5808 -0.52259 -0.00017848 0.40866 0.00013957 -0.11392 -3.8909E-05 341.53434984725243 16.161 0.82279 14.939 14.747 15.57 -1.2219 55 23 5 0 0 0 0.91149 1 2382 2382 0.62683 0 1 39977000 + 44361 24056 29491 29511 43685 43685 0.07086913620082669 TAATPSTTV 9 Unmodified _TAATPSTTV_ 0 0 0 REV__ENSG00000196233|ENST00000421806|LCOR REV__ENSG00000196233|ENST00000421806|LCOR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2512512207031 2 424.721633 847.428712 0.10347 4.3948E-05 -0.12596 -5.3499E-05 -0.02249 -9.5518E-06 424.7214871711666 31.796 0.70042 29.566 29.2 29.9 -2.2305 45 19 3 0 0 0 0.17664 1 5799 5799 2.8827 0.25143 1 6666800 + 44362 19229 29492 29512 43686 43686 -0.0011048712749470724 TAATTSPGASG 11 Unmodified _TAATTSPGASG_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2480163574219 2 460.719621 919.42469 0.053642 2.4714E-05 0.67857 0.00031263 0.73221 0.00033734 460.7199776360127 26.608 0.71967 24.686 24.335 25.054 -1.9222 48 20 3 0 0 0 0.89764 1 4417 4417 17.113 0 1 806010 44363 7651 29493 29513 43687 43687 -0.03824576621173037 TAAVAEVRC 9 Unmodified _TAAVAEVRC_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23590087890625 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 24.719 1 24.719 24.219 25.219 0 0 0 0 0.20628 1 4265 4265 21.747 5.8995 1 44364 12220 29494 29514 43688 43688 -0.0031903201407885717 TAAVLDRES 9 Unmodified _TAAVLDRES_ 0 0 0 nc|ENSG00000179242|P55283-2|CDH4;CDH4|p.Y862Mfs*22|2|0.33|ENSG00000179242|chr20:61936770-61936770|C/-|frameshift_variant;ENSG00000179242|ENST00000614565|CDH4 nc|ENSG00000179242|P55283-2|CDH4 nc|ENSG00000179242|P55283-2|CDH4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.250732421875 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 71.673 1 68.423 67.923 68.923 -3.2492 0 0 0 0.16428 1 13960 13960 28.487 8.0332 1 44365 463 29495 29515 43689 43689 0.005799891668630153 TAAVLGAF 8 Unmodified _TAAVLGAF_ 0 0 0 ENSG00000184497|ENST00000375353|TMEM255B ENSG00000184497|ENST00000375353|TMEM255B ENSG00000184497|ENST00000375353|TMEM255B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2126159667969 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 69.966 1 66.499 65.999 66.999 -3.467 0 0 0 0.21486 1 13240 13240 5.2307 0 1 44366 6913 29496 29516 43690 43690 0.02767056777236121 TAAVPSKPRV 10 Unmodified _TAAVPSKPRV_ 0 0 0 REV__ENST00000374116.3_1_6:34213385-34213451:+|nuORF REV__ENST00000374116.3_1_6:34213385-34213451:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.0176086425781 3 342.541586 1024.60293 -0.48911 -0.00016754 0.32326 0.00011073 -0.16585 -5.6811E-05 342.5416737346906 16.665 0.33914 15.443 15.263 15.602 -1.2219 13 9 2 0 0 0 0.91149 1 2382 2382 0.62683 0.62683 1 336310 + 44367 21050 29497 29517 43691 43691 0.09161138088529697 TAAVPSKPRV 10 Unmodified _TAAVPSKPRV_ 0 0 0 REV__ENST00000374116.3_1_6:34213385-34213451:+|nuORF REV__ENST00000374116.3_1_6:34213385-34213451:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 342.541586 1024.60293 -0.45642 -0.00015634 0.61012 0.00020899 0.1537 5.265E-05 342.54168008707717 15.462 0.24293 15.462 15.33 15.572 0 0.009325 0.0002361 NaN 0.62683 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 357570 + 44368 21050 29497 29517 0.09161138088529697 TAAVPSKPRV 10 Unmodified _TAAVPSKPRV_ 0 0 0 REV__ENST00000374116.3_1_6:34213385-34213451:+|nuORF REV__ENST00000374116.3_1_6:34213385-34213451:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 342.541586 1024.60293 -0.63751 -0.00021837 0.024963 8.5509E-06 -0.61255 -0.00020982 343.20976583397993 16.669 0.31642 15.453 15.285 15.601 -1.2159 0.00052853 -0.00036523 NaN 0.62683 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 307210 + 44369 21050 29497 29517 0.09161138088529697 TAAVSAIS 8 Unmodified _TAAVSAIS_ 0 0 0 REV__ENST00000591160.1_1_19:5902597-5903854:-|nuORF REV__ENST00000591160.1_1_19:5902597-5903854:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 61.564 1 58.324 57.824 58.824 -3.2395 0 0 0 0.21486 1 11525 11525 8.5933 0 1 + 44370 23330 29498 29518 43692 43692 0.015661625349594033 TACGSRCR 8 Unmodified _TACGSRCR_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.139892578125 2 427.191997 852.36944 NaN NaN NaN NaN NaN NaN NaN 37.736 1 35.267 34.767 35.767 -2.4688 0 0 0 0.21486 1 6976 6976 5.2307 0 1 44371 7315 29499 29519 43693 43693 -0.06264984894301051 TACHLEEL 8 Unmodified _TACHLEEL_ 0 0 0 REV__ENSG00000077942|ENST00000327858|FBLN1 REV__ENSG00000077942|ENST00000327858|FBLN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23291015625 2 458.21566 914.416767 NaN NaN NaN NaN NaN NaN NaN 101.9 1 97.584 97.084 98.084 -4.3208 0 0 0 0.21486 1 19505 19505 8.5933 0 1 + + 44372 13505 29500 29520 43694 43694 -0.04386427142298999 TACIWFPGY 9 Unmodified _TACIWFPGY_ 0 0 0 REV__ENSG00000058799|ENST00000072644|YIPF1 REV__ENSG00000058799|ENST00000072644|YIPF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 353.1653137207031 3 353.165239 1056.47389 -0.0044771 -1.5812E-06 -0.58427 -0.00020634 -0.58875 -0.00020792 353.165062022137 40.302 0.46587 37.762 37.533 37.999 -2.5398 19 12 2 0 0 0 0.77797 1 7255 7255 2.7352 1.0826 1 4764900 + 44373 14132 29501 29521 43695 43695 -0.05208959865922225 TACIWFPGY 9 Unmodified _TACIWFPGY_ 0 0 0 REV__ENSG00000058799|ENST00000072644|YIPF1 REV__ENSG00000058799|ENST00000072644|YIPF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 353.165239 1056.47389 -0.20108 -7.1016E-05 -0.27187 -9.6014E-05 -0.47295 -0.00016703 353.1652079186951 37.779 0.3835 37.779 37.508 37.892 0 0.018785 9.571E-06 NaN 2.7352 18 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1907400 + 44374 14132 29501 29521 -0.05208959865922225 TACIWFPGY 9 Unmodified _TACIWFPGY_ 0 0 0 REV__ENSG00000058799|ENST00000072644|YIPF1 REV__ENSG00000058799|ENST00000072644|YIPF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 353.165239 1056.47389 -0.51093 -0.00018044 -0.0013181 -4.6552E-07 -0.51224 -0.00018091 353.16526875322967 40.408 0.46437 37.773 37.506 37.97 -2.6348 0.013248 0.00029622 NaN 2.7352 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3868200 + 44375 14132 29501 29521 -0.05208959865922225 TACIWFPGY 9 Unmodified _TACIWFPGY_ 0 0 0 REV__ENSG00000058799|ENST00000072644|YIPF1 REV__ENSG00000058799|ENST00000072644|YIPF1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 353.165239 1056.47389 -0.0044771 -1.5812E-06 -0.58427 -0.00020634 -0.58875 -0.00020792 353.165062022137 40.302 0.46587 37.762 37.533 37.999 -2.5398 0.0026672 -0.00032142 NaN 2.7352 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4764900 + 44376 14132 29501 29521 -0.05208959865922225 TACIWFPGY 9 Unmodified _TACIWFPGY_ 0 0 0 REV__ENSG00000058799|ENST00000072644|YIPF1 REV__ENSG00000058799|ENST00000072644|YIPF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 353.165239 1056.47389 -0.57991 -0.00020481 -0.084586 -2.9873E-05 -0.6645 -0.00023468 353.16522132426275 40.215 0.39141 37.725 37.439 37.83 -2.4896 -0.034701 0.000208 NaN 2.7352 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2464100 + 44377 14132 29501 29521 -0.05208959865922225 TACMHNLLI 9 Unmodified _TACMHNLLI_ 0 0 0 tr|U7SE86|U7SE86_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1 tr|U7SE86|U7SE86_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1 tr|U7SE86|U7SE86_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.1746520996094 3 339.173629 1014.49906 NaN NaN NaN NaN NaN NaN NaN 29.308 1 29.308 28.808 29.808 0 0 0 0 0.23508 1 5232 5232 1.0715 0 1 44378 25873 29502 29522 43696 43696 -0.007612283349999416 TADAVYQPP 9 Unmodified _TADAVYQPP_ 0 0 0 REV__ENST00000594676.1_1_19:40023193-40023817:+|nuORF REV__ENST00000594676.1_1_19:40023193-40023817:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2503967285156 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 23.117 1 21.328 20.828 21.828 -1.7886 0 0 0 0.22251 1 3704 3704 16.942 1.0951 1 + 44379 23367 29503 29523 43697 43697 -0.02654798236142142 TADDPSLSL 9 Unmodified _TADDPSLSL_ 0 0 0 ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF;nc|ENSG00000244038|P39656-3|DDOST ENSG00000244038|ENST00000602624|DDOST ENSG00000244038|ENST00000602624|DDOST MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2265625 2 459.724372 917.434192 -0.015679 -7.2081E-06 0.29151 0.00013401 0.27583 0.00012681 459.7244736162628 93.836 0.84031 93.836 93.506 94.346 0 49 23 3 0 0 0 0.057505 1 18365 18365 68.081 10.609 1 6061200 44380 7877 29504 29524 43698 43698 -0.027828083356666866 TADDPSLSL 9 Unmodified _TADDPSLSL_ 0 0 0 ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF;nc|ENSG00000244038|P39656-3|DDOST ENSG00000244038|ENST00000602624|DDOST ENSG00000244038|ENST00000602624|DDOST MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2264099121094 2 459.724372 917.434192 -0.052373 -2.4077E-05 0.45141 0.00020753 0.39904 0.00018345 459.72443508620967 97.868 0.72824 93.77 93.464 94.192 -4.0978 47 20 3 0 0 0 0.071377 2 19205 19205;19263 64.236 13.381 1 9518400 44381 7877 29504 29524 43699;43700 43699 -0.027828083356666866 TADDPSLSL 9 Unmodified _TADDPSLSL_ 0 0 0 ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF;nc|ENSG00000244038|P39656-3|DDOST ENSG00000244038|ENST00000602624|DDOST ENSG00000244038|ENST00000602624|DDOST MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22637939453125 2 459.724372 917.434192 0.13682 6.2899E-05 0.22471 0.0001033 0.36153 0.0001662 459.72438849318274 98.236 0.76313 93.967 93.604 94.367 -4.2692 52 21 4 0 0 0 0.049627 2 18798 18798;18829 71.134 13.662 1 10504000 44382 7877 29504 29524 43701;43702 43701 -0.027828083356666866 TADDPSLSL 9 Unmodified _TADDPSLSL_ 0 0 0 ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF;nc|ENSG00000244038|P39656-3|DDOST ENSG00000244038|ENST00000602624|DDOST ENSG00000244038|ENST00000602624|DDOST MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.724372 917.434192 0.052941 2.4338E-05 0.35869 0.0001649 0.41164 0.00018924 459.72442758881283 97.761 0.76265 93.841 93.574 94.336 -3.9194 -0.01209 2.391E-05 NaN 71.134 47 21 3 NaN NaN NaN NaN 0 NaN NaN 0 9069000 44383 7877 29504 29524 -0.027828083356666866 TADEDVEFSCE 11 Unmodified _TADEDVEFSCE_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7667846679688 2 622.734808 1243.45506 0.45441 0.00028297 0.084878 5.2856E-05 0.53928 0.00033583 622.7351021936323 63.467 0.4809 60.211 59.952 60.432 -3.2567 24 13 3 0 0 0 0.78434 1 11946 11946 5.7319 1.4026 1 1402100 44384 5009 29505 29525 43703 43703 -0.1569263080896235 TADGAHFEL 9 Unmodified _TADGAHFEL_ 0 0 0 ENST00000546538.1_1_19:16643407-16652813:-|nuORF;CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP ENST00000546538.1_1_19:16643407-16652813:-|nuORF ENST00000546538.1_1_19:16643407-16652813:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2436218261719 2 480.724707 959.43486 -0.14189 -6.8211E-05 0.87066 0.00041855 0.72877 0.00035034 480.7251643707303 89.15 0.84521 89.15 88.754 89.599 0 54 23 3 0 0 0 0.13708 2 17449 17339;17449 46.021 17.534 1 13091000 44385 524 29506 29526 43704;43705 43705 -0.0464796889596073 TADGAHFEL 9 Unmodified _TADGAHFEL_ 0 0 0 ENST00000546538.1_1_19:16643407-16652813:-|nuORF;CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP ENST00000546538.1_1_19:16643407-16652813:-|nuORF ENST00000546538.1_1_19:16643407-16652813:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2545471191406 2 480.724707 959.43486 0.020569 9.8881E-06 0.9483 0.00045587 0.96886 0.00046576 480.72512832720827 92.842 0.83096 88.916 88.549 89.38 -3.9251 57 23 3 0 0 0 0.19311 2 18133 18133;18257 37.974 11.09 1 10558000 44386 524 29506 29526 43706;43707 43706 -0.0464796889596073 TADGAHFEL 9 Unmodified _TADGAHFEL_ 0 0 0 ENST00000546538.1_1_19:16643407-16652813:-|nuORF;CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP ENST00000546538.1_1_19:16643407-16652813:-|nuORF ENST00000546538.1_1_19:16643407-16652813:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24761962890625 2 480.724707 959.43486 0.26627 0.000128 0.64596 0.00031053 0.91222 0.00043853 480.72498325810034 93.024 0.99536 88.881 88.418 89.413 -4.1435 60 28 3 0 0 0 0.057505 2 17756 17671;17756 68.081 33.978 1 8812800 44387 524 29506 29526 43708;43709 43709 -0.0464796889596073 TADGAHFEL 9 Unmodified _TADGAHFEL_ 0 0 0 ENST00000546538.1_1_19:16643407-16652813:-|nuORF;CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP ENST00000546538.1_1_19:16643407-16652813:-|nuORF ENST00000546538.1_1_19:16643407-16652813:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.239990234375 2 480.724707 959.43486 0.029123 1.4E-05 0.967 0.00046486 0.99613 0.00047886 480.7250756696323 92.76 0.95485 88.916 88.476 89.431 -3.844 68 27 3 0 0 0 0.0083817 1 17786 17786 108 55.729 1 8438600 44388 524 29506 29526 43710 43710 -0.0464796889596073 TADGKTYYY 9 Unmodified _TADGKTYYY_ 0 0 0 nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;TCERG1|p.I983Nfs*3|1|0.36|ENSG00000113649|chr5:146507901-146507902|-/A|frameshift_variant;TCERG1|p.I983Sfs*41|1|0.35|ENSG00000113649|chr5:146507902-146507902|A/-|frameshift_variant;ENST00000513298.5_1_5:145838810-145849312:+|nuORF;ENST00000507175.5_1_5:145826912-145859658:+|nuORF;TCERG1|p.K627Nfs*37|1|0.1|ENSG00000113649|chr5:146480083-146480083|A/-|frameshift_variant;TCERG1|p.M735Nfs*8|1|0.26|ENSG00000113649|chr5:146493003-146493004|-/A|frameshift_variant;TCERG1|p.K957Rfs*17|1|0.28|ENSG00000113649|chr5:146507160-146507160|A/-|frameshift_variant nc|ENSG00000113649|O14776-2|TCERG1 nc|ENSG00000113649|O14776-2|TCERG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2651977539062 2 541.245472 1080.47639 0.56477 0.00030568 -0.46391 -0.00025109 0.10086 5.4588E-05 541.2452273328491 43.721 0.694 43.721 43.329 44.023 0 46 19 3 0 0 0 0.037506 1 8201 8201 60.47 55.811 1 10140000 44389 2757 29507 29527 43711 43711 -0.06062832927295858 TADGKTYYY 9 Unmodified _TADGKTYYY_ 0 0 0 nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;TCERG1|p.I983Nfs*3|1|0.36|ENSG00000113649|chr5:146507901-146507902|-/A|frameshift_variant;TCERG1|p.I983Sfs*41|1|0.35|ENSG00000113649|chr5:146507902-146507902|A/-|frameshift_variant;ENST00000513298.5_1_5:145838810-145849312:+|nuORF;ENST00000507175.5_1_5:145826912-145859658:+|nuORF;TCERG1|p.K627Nfs*37|1|0.1|ENSG00000113649|chr5:146480083-146480083|A/-|frameshift_variant;TCERG1|p.M735Nfs*8|1|0.26|ENSG00000113649|chr5:146493003-146493004|-/A|frameshift_variant;TCERG1|p.K957Rfs*17|1|0.28|ENSG00000113649|chr5:146507160-146507160|A/-|frameshift_variant nc|ENSG00000113649|O14776-2|TCERG1 nc|ENSG00000113649|O14776-2|TCERG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2754516601562 2 541.245472 1080.47639 -0.012082 -6.5393E-06 0.49296 0.00026681 0.48088 0.00026027 541.2457141216828 46.866 0.69712 43.999 43.611 44.308 -2.8665 38 19 3 0 0 0 0.010315 1 8520 8520 103.82 49.05 1 13207000 44390 2757 29507 29527 43712 43712 -0.06062832927295858 TADGLYLY 8 Unmodified _TADGLYLY_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;HECTD4|p.L1880Pfs*22|1|0.19|ENSG00000173064|chr12:112231674-112231675|-/TAGGA|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2284851074219 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 138.24 1 133.59 133.09 134.09 -4.6413 0 0 0 0.22934 1 27291 27291 0.25148 0 1 44391 6261 29508 29528 43713 43713 -0.02209299122102948 TADGLYLY 8 Unmodified _TADGLYLY_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;HECTD4|p.L1880Pfs*22|1|0.19|ENSG00000173064|chr12:112231674-112231675|-/TAGGA|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2358093261719 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 113.67 1 109.15 108.65 109.65 -4.5259 0 0 0 0.23366 1 21823 21823 0.12286 0 1 44392 6261 29508 29528 43714 43714 -0.02209299122102948 TADHFYGY 8 Unmodified _TADHFYGY_ 0 0 0 REV__chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA REV__chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.1847839355469 3 325.139859 972.397747 -0.43792 -0.00014239 0.60685 0.00019731 0.16893 5.4924E-05 325.14001919617675 31.14 0.77503 31.14 30.825 31.6 0 35 21 2 0 0 0 0.89712 1 5685 5685 0.0082765 0 1 1721700 + 44393 13424 29509 29529 43715 43715 -0.0895564044171806 TADHFYGY 8 Unmodified _TADHFYGY_ 0 0 0 REV__chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA REV__chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.52178955078125 3 325.139859 972.397747 -0.23214 -7.5479E-05 0.27155 8.8292E-05 0.039409 1.2813E-05 325.1399088717862 33.187 0.58927 30.869 30.593 31.182 -2.3175 26 16 2 0 0 0 0.89147 1 6109 6109 0.12286 0.12286 1 1955000 + 44394 13424 29509 29529 43716 43716 -0.0895564044171806 TADHFYGY 8 Unmodified _TADHFYGY_ 0 0 0 REV__chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA REV__chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 325.139859 972.397747 0.23677 7.6985E-05 -0.055436 -1.8024E-05 0.18134 5.896E-05 325.13981232241696 33.101 0.7375 30.955 30.655 31.393 -2.1468 -0.028718 -0.00037285 NaN 0.12286 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2199700 + 44395 13424 29509 29529 -0.0895564044171806 TADHFYGY 8 Unmodified _TADHFYGY_ 0 0 0 REV__chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA REV__chr20:56390665-56392154|451|11.2|0.64|4.13|-|ENST00000441357|AURKA,AURKA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 325.139859 972.397747 -0.26947 -8.7616E-05 0.45313 0.00014733 0.18365 5.9713E-05 325.1399652969511 33.185 0.68491 30.97 30.704 31.389 -2.2158 -0.013718 0.00012321 NaN 0.12286 37 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1793800 + 44396 13424 29509 29529 -0.0895564044171806 TADHNLLLYEA 11 Unmodified _TADHNLLLYEA_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7655639648438 2 630.31696 1258.61937 0.79392 0.00050042 -1.4044 -0.00088521 -0.61047 -0.00038479 630.3162570992785 119.66 0.25504 115.01 114.81 115.06 -4.645 10 6 2 0 0 0 0.6637 1 22952 22952 14.218 4.835 1 980380 44397 6864 29510 29530 43717 43717 0.0004017446399302571 TADLHAFST 9 Unmodified _TADLHAFST_ 0 0 0 REV__ENST00000411980.1_1_2:98823421-98823919:+|nuORF REV__ENST00000411980.1_1_2:98823421-98823919:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78607177734375 2 481.732532 961.45051 NaN NaN NaN NaN NaN NaN NaN 58.178 1 54.927 54.427 55.427 -3.2517 0 0 0 0.21469 1 10807 10807 19.257 1.1106 1 + 44398 21430 29511 29531 43718 43718 -0.0317568237891237 TADLNRGFL 9 Unmodified _TADLNRGFL_ 0 0 0 GNPNAT1|p.F54Lfs*7|2|0.29|ENSG00000100522|chr14:52783478-52783478|A/-|frameshift_variant GNPNAT1|p.F54Lfs*7|2|0.29|ENSG00000100522|chr14:52783478-52783478|A/-|frameshift_variant GNPNAT1|p.F54Lfs*7|2|0.29|ENSG00000100522|chr14:52783478-52783478|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.0468444824219 3 336.182058 1005.52434 0.054368 1.8278E-05 -0.19321 -6.4955E-05 -0.13885 -4.6678E-05 336.181876843969 53.098 0.66172 50.01 49.586 50.248 -3.0876 23 18 2 0 0 0 0.8825 1 9702 9702 2.7352 2.2769 1 667500 44399 11856 29512 29532 43719 43719 0.021802857834245515 TADLYEKNK 9 Unmodified _TADLYEKNK_ 0 0 0 REV__PLCL1|p.N333T|1|0.07|ENSG00000115896|chr2:198084515-198084515|A/C|missense_variant REV__PLCL1|p.N333T|1|0.07|ENSG00000115896|chr2:198084515-198084515|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2797241210938 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 31.985 1 29.836 29.336 30.336 -2.1483 0 0 0 0.23508 1 5528 5528 11.64 1.5664 1 + 44400 24481 29513 29533 43720 43720 0.008088313724329055 TADNIKPD 8 Unmodified _TADNIKPD_ 0 0 0 REV__ENST00000468586.5_1_1:62149184-62190652:-|nuORF REV__ENST00000468586.5_1_1:62149184-62190652:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2181701660156 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 32.53 1 30.299 29.799 30.799 -2.2305 0 0 0 0.21486 1 5930 5930 9.3474 0 1 + 44401 17508 29514 29534 43721 43721 -0.017353712702401936 TADPESPAPA 10 Unmodified _TADPESPAPA_ 0 0 0 REV__ENSG00000171794|ENST00000304477|UTF1 REV__ENSG00000171794|ENST00000304477|UTF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72344970703125 2 478.221997 954.429441 -0.021298 -1.0185E-05 0.44885 0.00021465 0.42756 0.00020447 478.2220334707345 46.101 0.65635 43.236 43.001 43.657 -2.8653 25 18 2 0 0 0 0.65405 1 8347 8347 15.847 1.2655 1 939470 + 44402 18249 29515 29535 43722 43722 -0.04959692478428224 TADPESPAPA 10 Unmodified _TADPESPAPA_ 0 0 0 REV__ENSG00000171794|ENST00000304477|UTF1 REV__ENSG00000171794|ENST00000304477|UTF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7260437011719 2 478.221997 954.429441 -0.092656 -4.431E-05 0.011354 5.4296E-06 -0.081302 -3.8881E-05 478.221966016396 46.171 0.65068 43.304 43.031 43.681 -2.8665 27 18 2 0 0 0 0.65405 1 8355 8355 15.847 3.3156 1 685700 + 44403 18249 29515 29535 43723 43723 -0.04959692478428224 TADPLDYRL 9 Unmodified _TADPLDYRL_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2799072265625 2 532.274564 1062.53457 0.75063 0.00039954 -0.18699 -9.953E-05 0.56364 0.00030001 532.2742693273545 124.64 0.60284 119.87 119.52 120.13 -4.7681 39 16 3 0 0 0 0.50419 1 23963 23963 19.362 1.2156 1 4560800 44404 2583 29516 29536 43724 43724 0.0058084871798200766 TADPLDYRL 9 Unmodified _TADPLDYRL_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.274564 1062.53457 0.08201 4.3652E-05 -0.39042 -0.00020781 -0.30841 -0.00016416 532.2741479984383 119.93 0.59308 119.93 119.65 120.25 0 0.037506 -0.00040798 NaN 19.362 32 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2947600 44405 2583 29516 29536 0.0058084871798200766 TADPLDYRL 9 Unmodified _TADPLDYRL_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.274564 1062.53457 0.21262 0.00011317 0.26107 0.00013896 0.47369 0.00025213 532.2745906250318 124.5 0.87286 119.92 119.48 120.35 -4.5757 0.030694 0.00028557 NaN 19.362 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 5407400 44406 2583 29516 29536 0.0058084871798200766 TADPLDYRL 9 Unmodified _TADPLDYRL_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.274564 1062.53457 0.29677 0.00015796 0.11271 5.9995E-05 0.40948 0.00021796 532.2744141734591 124.47 1.0077 119.84 119.33 120.33 -4.6295 -0.049269 0.00012763 NaN 19.362 41 27 2 NaN NaN NaN NaN 0 NaN NaN 0 4228000 44407 2583 29516 29536 0.0058084871798200766 TADPMLMH 8 Unmodified _TADPMLMH_ 0 0 0 REV__ENSG00000198759|ENST00000361306|EGFL6 REV__ENSG00000198759|ENST00000361306|EGFL6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2398681640625 2 458.206781 914.399009 0.22068 0.00010112 -0.88758 -0.0004067 -0.6669 -0.00030558 458.20629788755843 19.224 1.4831 19.224 18.687 20.17 0 89 42 3 0 0 0 0.64227 1 3036 3036 19.439 1.2926 1 2465200 + 44408 19446 29517 29537 43725 43725 -0.06161465668810706 TADPSRPSTY 10 Unmodified _TADPSRPSTY_ 0 0 0 REV__ENSG00000205277|ENST00000536621|MUC12 REV__ENSG00000205277|ENST00000536621|MUC12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7800903320312 2 547.759278 1093.504 NaN NaN NaN NaN NaN NaN NaN 60.492 1 60.492 59.992 60.992 0 0 0 0 0.22569 1 11596 11596 15.847 3.3156 1 + 44409 19584 29518 29538 43726 43726 -0.03900929667042874 TADQAIIFV 9 Unmodified _TADQAIIFV_ 0 0 0 nc|ENSG00000158079|A2A3K4|PTPDC1;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.273681640625 2 489.26875 976.522947 0.1291 6.3164E-05 0.020512 1.0036E-05 0.14961 7.32E-05 489.2688246258822 135.75 0.77206 131.11 130.69 131.47 -4.6399 40 21 3 0 0 0 0.48644 1 26738 26738 20.454 2.3073 1 4692200 44410 5153 29519 29539 43727 43727 0.03374651694673503 TADRIPIAV 9 Unmodified _TADRIPIAV_ 0 0 0 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7335510253906 2 478.282192 954.549831 -0.077598 -3.7114E-05 -1.3711 -0.00065579 -1.4487 -0.00069291 478.28122593656514 107.74 0.3801 103.33 103.27 103.65 -4.4121 12 10 2 0 0 0 0.54058 1 20692 20692 12.241 11.861 1 1151400 44411 1752 29520 29540 43728 43728 0.07073760305854648 TADSQPPVF 9 Unmodified _TADSQPPVF_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23492431640625 2 481.234907 960.455261 0.2628 0.00012647 -0.032533 -1.5656E-05 0.23027 0.00011081 481.23480211227474 82.031 1.0903 82.031 81.546 82.636 0 71 30 3 0 0 0 0.0038583 5 15957 15927;15933;15957;16002;16047 115.69 85.055 1 5942000 44412 3631 29521 29541 43729;43730;43731;43732;43733 43731 -0.02654798236130773 TADSQPPVF 9 Unmodified _TADSQPPVF_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2350769042969 2 481.234907 960.455261 -0.011043 -5.3143E-06 0.12168 5.8559E-05 0.11064 5.3245E-05 481.23490011849407 85.844 1.0769 82.148 81.539 82.616 -3.6958 72 29 3 0 0 0 7.7434E-05 7 16760 16719;16747;16760;16768;16803;16817;16848 128.37 98.141 1 9996300 44413 3631 29521 29541 43734;43735;43736;43737;43738;43739;43740 43736 -0.02654798236130773 TADSQPPVF 9 Unmodified _TADSQPPVF_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23492431640625 2 481.234907 960.455261 0.27817 0.00013387 -0.096153 -4.6272E-05 0.18202 8.7595E-05 481.23475711008933 86.025 0.8469 82.074 81.663 82.51 -3.9503 64 23 3 0 0 0 1.3328E-06 11 16364 16314;16338;16348;16351;16364;16367;16400;16407;16437;16449;16458 141.83 103.68 1 9381000 44414 3631 29521 29541 43741;43742;43743;43744;43745;43746;43747;43748;43749;43750;43751 43745 -0.02654798236130773 TADSQPPVF 9 Unmodified _TADSQPPVF_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23504638671875 2 481.234907 960.455261 -0.0080367 -3.8675E-06 0.19386 9.3291E-05 0.18582 8.9423E-05 481.23488196873967 85.802 1.1181 82.073 81.681 82.8 -3.7289 75 31 3 0 0 0 1.3328E-06 7 16389 16322;16336;16367;16389;16417;16441;16493 141.83 103.68 1 8187000 44415 3631 29521 29541 43752;43753;43754;43755;43756;43757;43758 43755 -0.02654798236130773 TADSSSHFA 9 Unmodified _TADSSSHFA_ 0 0 0 REV__ENSG00000205277|ENST00000536621|MUC12 REV__ENSG00000205277|ENST00000536621|MUC12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.52947998046875 2 461.698689 921.382825 0.57958 0.00026759 -0.69472 -0.00032075 -0.11513 -5.3157E-05 461.6983302987321 100.75 0.81269 100.75 100.41 101.22 0 46 22 3 0 0 0 0.55728 1 19730 19730 0.12781 0.12781 1 3683700 + 44416 19584 29522 29542 43759 43759 -0.08101132309707282 TADSSSHFA 9 Unmodified _TADSSSHFA_ 0 0 0 REV__ENSG00000205277|ENST00000536621|MUC12 REV__ENSG00000205277|ENST00000536621|MUC12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5271301269531 2 461.698689 921.382825 NaN NaN NaN NaN NaN NaN NaN 43.094 1 43.094 42.594 43.594 0 0 0 0 0.23508 1 8070 8070 10.824 2.2306 1 + 44417 19584 29522 29542 43760 43760 -0.08101132309707282 TADSSSHFA 9 Unmodified _TADSSSHFA_ 0 0 0 REV__ENSG00000205277|ENST00000536621|MUC12 REV__ENSG00000205277|ENST00000536621|MUC12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.52984619140625 2 461.698689 921.382825 NaN NaN NaN NaN NaN NaN NaN 56.878 1 53.984 53.484 54.484 -2.8944 0 0 0 0.19652 1 10909 10909 0.073264 0.064987 1 + 44418 19584 29522 29542 43761 43761 -0.08101132309707282 TADSSSHFA 9 Unmodified _TADSSSHFA_ 0 0 0 REV__ENSG00000205277|ENST00000536621|MUC12 REV__ENSG00000205277|ENST00000536621|MUC12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.698689 921.382825 0.75525 0.0003487 -0.92606 -0.00042756 -0.17081 -7.8861E-05 461.6982281498994 104.95 0.60873 100.9 100.55 101.16 -4.0543 0.071456 -0.00010029 NaN 0.12781 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1913800 + 44419 19584 29522 29542 -0.08101132309707282 TADTPSPNL 9 Unmodified _TADTPSPNL_ 0 0 0 REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1 REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23773193359375 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 79.591 1 75.915 75.415 76.415 -3.676 0 0 0 0.14843 1 15164 15164 30.637 2.1497 1 + 44420 15129 29523 29543 43762 43762 -0.026113886158100286 TADTPSPSPPP 11 Unmodified _TADTPSPSPPP_ 0 0 0 MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant;MCTP1|p.K875Rfs*4|3|0.53|ENSG00000175471|chr5:94714873-94714873|T/-|frameshift_variant;ENSG00000175471|ENST00000515393|MCTP1;MCTP1|p.D177Tfs*66|1|0.12|ENSG00000175471|chr5:95284047-95284047|C/-|frameshift_variant MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 534.742431640625 2 533.756204 1065.49785 0.64999 0.00034693 -0.28814 -0.0001538 0.36184 0.00019314 533.7559893230763 31.264 0.67157 29.237 28.845 29.517 -2.0264 30 18 3 0 0 0 0.7348 1 5428 5428 9.3831 1.473 1 1255300 44421 6414 29524 29544 43763 43763 -0.03227447898552782 TADVSHTNL 9 Unmodified _TADVSHTNL_ 0 0 0 nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7232666015625 2 479.235439 956.456324 -0.040073 -1.9205E-05 0.1619 7.7591E-05 0.12183 5.8386E-05 479.2352765070336 32.076 0.51939 32.076 31.809 32.329 0 28 14 3 0 0 0 0.028725 1 5797 5797 74.2 32.36 1 3538300 44422 2342 29525 29545 43764 43764 -0.023645838672450736 TADVSHTNL 9 Unmodified _TADVSHTNL_ 0 0 0 nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7222595214844 2 479.235439 956.456324 -0.093963 -4.503E-05 0.10402 4.9851E-05 0.010058 4.8202E-06 479.2354130971937 34.191 0.41914 31.874 31.63 32.049 -2.3175 28 11 3 0 0 0 0.089388 1 6293 6293 57.722 17.772 1 2789100 44423 2342 29525 29545 43765 43765 -0.023645838672450736 TADVSHTNL 9 Unmodified _TADVSHTNL_ 0 0 0 nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7440490722656 2 479.235439 956.456324 0.20424 9.7881E-05 -0.30808 -0.00014764 -0.10384 -4.9763E-05 479.2352544905073 34.119 0.55173 31.972 31.67 32.222 -2.1468 27 15 2 0 0 0 0.029747 1 5990 5990 79.596 46.811 1 3643700 44424 2342 29525 29545 43766 43766 -0.023645838672450736 TADVSHTNL 9 Unmodified _TADVSHTNL_ 0 0 0 nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7225646972656 2 479.235439 956.456324 0.35537 0.0001703 -0.34448 -0.00016509 0.010891 5.2193E-06 479.2351325424584 34.155 0.63149 31.939 31.633 32.264 -2.2158 40 17 4 0 0 0 1.6154E-06 1 5978 5978 121.53 60.177 1 2559500 44425 2342 29525 29545 43767 43767 -0.023645838672450736 TADVSSLQV 9 Unmodified _TADVSSLQV_ 0 0 0 REV__ENSG00000164620|ENST00000297164|RELL2 REV__ENSG00000164620|ENST00000297164|RELL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2388916015625 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 64.964 1 64.964 64.464 65.464 0 0 0 0 0.23508 1 12513 12513 11.64 0 1 + 44426 17696 29526 29546 43768 43768 0.0033318441829806034 TAEAAQQPSY 10 Unmodified _TAEAAQQPSY_ 0 0 0 RBM47|p.A336T|1|0.26|ENSG00000163694|chr4:40437888-40437888|C/T|missense_variant RBM47|p.A336T|1|0.26|ENSG00000163694|chr4:40437888-40437888|C/T|missense_variant RBM47|p.A336T|1|0.26|ENSG00000163694|chr4:40437888-40437888|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2821655273438 2 533.246003 1064.47745 0.31729 0.00016919 0.99915 0.00053279 1.3164 0.00070198 533.2462686763221 79.755 1.3269 75.951 75.475 76.801 -3.8048 88 37 4 0 0 0 0.61743 1 15109 15109 23.79 12.295 1 14171000 44427 12872 29527 29547 43769 43769 -0.05220618558360002 TAEDQGGILG 10 Unmodified _TAEDQGGILG_ 0 0 0 ENST00000342202.8_1_11:65360478-65360745:-|nuORF;ENSG00000173338|ENST00000340313|KCNK7 ENST00000342202.8_1_11:65360478-65360745:-|nuORF ENST00000342202.8_1_11:65360478-65360745:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23675537109375 2 480.735271 959.45599 0.2394 0.00011509 -0.11919 -5.7299E-05 0.12021 5.779E-05 480.73517754774167 49.194 0.88139 49.194 48.703 49.584 0 56 24 3 0 0 0 0.47533 1 9320 9320 30.637 0 1 10694000 44428 6289 29528 29548 43770 43770 -0.025360035870676256 TAEDSDHYK 9 Unmodified _TAEDSDHYK_ 0 0 0 REV__ENSG00000129187|ENST00000438320|DCTD REV__ENSG00000129187|ENST00000438320|DCTD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.271484375 2 533.22781 1064.44107 0.41763 0.00022269 -0.51705 -0.00027571 -0.09942 -5.3014E-05 533.2275024625266 34.367 0.41797 32.151 31.951 32.369 -2.2158 15 11 2 0 0 0 0.74257 1 5976 5976 4.3292 0 1 509280 + 44429 15951 29529 29549 43771 43771 -0.08857495455094977 TAEENLCCEE 10 Unmodified _TAEENLCCEE_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21929931640625 3 380.810973 1139.41109 0.87748 0.00033416 -0.51366 -0.00019561 0.36383 0.00013855 380.81076935900103 26.385 0.20449 24.602 24.416 24.62 -1.7821 7 5 2 0 0 0 0.91149 1 4638 4638 1.9064 1.7835 1 298850 44430 1610 29530 29550 43772 43772 -0.1530393850694054 TAEFAPEY 8 Unmodified _TAEFAPEY_ 0 0 0 REV__ENSG00000160111|ENST00000443236|CPAMD8 REV__ENSG00000160111|ENST00000443236|CPAMD8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 464.1264343261719 2 464.208358 926.402163 -0.36396 -0.00016895 0.1121 5.2038E-05 -0.25186 -0.00011692 464.2083895902428 39.137 0.42904 36.588 36.396 36.825 -2.5491 20 11 2 0 0 0 1.0147 1 7271 7271 2.3027 2.3027 1 1778700 + 44431 17394 29531 29551 43773 43773 -0.06398176018808499 TAEFAPEY 8 Unmodified _TAEFAPEY_ 0 0 0 REV__ENSG00000160111|ENST00000443236|CPAMD8 REV__ENSG00000160111|ENST00000443236|CPAMD8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.208358 926.402163 0.20723 9.6198E-05 -0.14687 -6.8177E-05 0.060364 2.8021E-05 464.20823652388856 36.905 0.59693 36.905 36.595 37.192 0 0.19254 -0.00019741 NaN 2.3027 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1663500 + 44432 17394 29531 29551 -0.06398176018808499 TAEFAPEY 8 Unmodified _TAEFAPEY_ 0 0 0 REV__ENSG00000160111|ENST00000443236|CPAMD8 REV__ENSG00000160111|ENST00000443236|CPAMD8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.208358 926.402163 -0.0084994 -3.9455E-06 0.17669 8.202E-05 0.16819 7.8074E-05 464.20839481480374 39.085 0.4856 36.643 36.408 36.893 -2.4419 -0.068665 0.00010299 NaN 2.3027 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1693300 + 44433 17394 29531 29551 -0.06398176018808499 TAEGLSVAPA 10 Unmodified _TAEGLSVAPA_ 0 0 0 ENSG00000180044|ENST00000326474|C3orf80 ENSG00000180044|ENST00000326474|C3orf80 ENSG00000180044|ENST00000326474|C3orf80 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2195739746094 2 458.242732 914.470912 0.26368 0.00012083 0.25039 0.00011474 0.51407 0.00023557 458.2425359554667 35.154 0.34843 35.154 34.925 35.274 0 20 9 3 0 0 0 0.66352 1 6469 6469 13.906 0 1 1563700 44434 6656 29532 29552 43774 43774 0.010254882809022092 TAEGLSVAPA 10 Unmodified _TAEGLSVAPA_ 0 0 0 ENSG00000180044|ENST00000326474|C3orf80 ENSG00000180044|ENST00000326474|C3orf80 ENSG00000180044|ENST00000326474|C3orf80 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2244873046875 2 458.242732 914.470912 -0.47622 -0.00021822 1.3083 0.00059952 0.83209 0.0003813 458.2431655603706 37.367 0.37876 34.898 34.772 35.151 -2.4688 14 10 2 0 0 0 0.45952 1 6913 6913 26.884 1.4843 1 824530 44435 6656 29532 29552 43775 43775 0.010254882809022092 TAEIPCPEP 9 Unmodified _TAEIPCPEP_ 0 0 0 RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant;ENSG00000124784|ENST00000379834|RIOK1 RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant RIOK1|p.E533Rfs*20|1|0.19|ENSG00000124784|chr6:7414384-7414385|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7231750488281 2 478.723318 955.432083 0.16304 7.8049E-05 0.71606 0.00034279 0.87909 0.00042084 478.72360444283004 84.341 2.4156 80.432 79.43 81.846 -3.9093 116 68 2 0 0 0 0.5059 1 16042 16042 19.257 3.4098 1 2218600 44436 3332 29533 29553 43776 43776 -0.04741560345121343 TAEKLYEC 8 Unmodified _TAEKLYEC_ 0 0 0 ENSG00000142065|ENST00000270001|ZFP14 ENSG00000142065|ENST00000270001|ZFP14 ENSG00000142065|ENST00000270001|ZFP14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.724853515625 2 478.723318 955.432083 0.12699 6.0791E-05 0.1679 8.0378E-05 0.29489 0.00014117 478.72333407830916 41.54 0.90764 41.54 40.92 41.828 0 58 25 3 0 0 0 0.60622 1 7644 7644 21.747 5.9784 1 6870400 44437 4404 29534 29554 43777 43777 -0.047415603451327115 TAEKPTLQQA 10 Unmodified _TAEKPTLQQA_ 0 0 0 REV__ENST00000482856.1_1_1:223116165-223116675:+|nuORF REV__ENST00000482856.1_1_1:223116165-223116675:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.793701171875 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 31.571 1 29.545 29.045 30.045 -2.0264 0 0 0 0.22588 1 5453 5453 12.241 0 1 + 44438 13686 29535 29555 43778 43778 0.03232520263782135 TAELVAQW 8 Unmodified _TAELVAQW_ 0 0 0 REV__ENST00000310160.7_1_19:49252991-49253306:-|nuORF REV__ENST00000310160.7_1_19:49252991-49253306:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2447204589844 2 459.239993 916.465432 -0.10257 -4.7106E-05 0.16162 7.4221E-05 0.059043 2.7115E-05 459.2399116331518 83.001 1.7227 79.303 78.212 79.935 -3.6985 133 49 4 0 0 0 0.66265 1 15754 15754 18.135 1.1927 1 48379000 + 44439 20477 29536 29556 43779 43779 0.0038580948909157087 TAEPVTLEDL 10 Unmodified _TAEPVTLEDL_ 0 0 0 nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-3|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-2|OGA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7913818359375 2 544.279512 1086.54447 0.58782 0.00031994 0.75166 0.00040912 1.3395 0.00072906 544.2799291486243 43.592 1.0025 43.592 43.02 44.023 0 61 28 3 0 0 0 0.66352 1 8186 8186 19.257 0 1 2579600 44440 7451 29537 29557 43780 43780 0.004659919327195894 TAEQAKAWG 9 Unmodified _TAEQAKAWG_ 0 0 0 REV__nc|ENSG00000162398|Q3ZCV2-2|CIMAP2 REV__nc|ENSG00000162398|Q3ZCV2-2|CIMAP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2414855957031 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 98.184 1 93.914 93.414 94.414 -4.2692 0 0 0 0.21469 1 18763 18763 19.257 3.4098 1 + 44441 17493 29538 29558 43781 43781 -0.015319761420073519 TAEQFRCH 8 Unmodified _TAEQFRCH_ 0 0 0 ENSG00000134569|ENST00000378623|LRP4 ENSG00000134569|ENST00000378623|LRP4 ENSG00000134569|ENST00000378623|LRP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 330.99700927734375 3 331.151993 990.434149 0.04215 1.3958E-05 0.67606 0.00022388 0.71821 0.00023784 331.1521276741775 38.944 0.4194 36.502 36.23 36.649 -2.4419 17 11 2 0 0 0 1.0277 1 6920 6920 0.40072 0 1 538410 44442 3861 29539 29559 43782 43782 -0.061450868166502914 TAEQGGQLFAR 11 Unmodified _TAEQGGQLFAR_ 0 0 0 REV__nc|ENSG00000204843|Q14203-5|DCTN1 REV__nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 393.29107666015625 3 393.203522 1176.58874 0.29168 0.00011469 -0.38305 -0.00015062 -0.091377 -3.593E-05 393.2034052767754 31.139 0.49279 29.112 28.879 29.372 -2.0264 46 13 5 0 0 0 0.96201 1 5318 5318 1.1098 0.96986 1 7983200 + 44443 19567 29540 29560 43783 43783 0.007504408695467646 TAERRLCL 8 Unmodified _TAERRLCL_ 0 0 0 REV__ENST00000266712.10_1_12:88542252-88547098:+|nuORF REV__ENST00000266712.10_1_12:88542252-88547098:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2444763183594 2 481.266019 960.517485 NaN NaN NaN NaN NaN NaN NaN 45.576 1 42.735 42.235 43.235 -2.8409 0 0 0 0.21486 1 8588 8588 5.7604 0.52976 1 + 44444 20253 29541 29561 43784 43784 0.035646496311983356 TAERSRQA 8 Unmodified _TAERSRQA_ 0 0 0 ENST00000431561.7_1_16:3283645-3284759:-|nuORF ENST00000431561.7_1_16:3283645-3284759:-|nuORF ENST00000431561.7_1_16:3283645-3284759:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2438049316406 2 459.741222 917.467892 0.13533 6.2217E-05 0.47176 0.00021689 0.60709 0.00027911 459.74133542838473 84.65 2.2989 80.741 79.79 82.088 -3.9093 142 65 3 0 0 0 8448 1 15945 15945 1.7423 0 1 4340800 44445 9788 29542 29562 43785 43785 0.005856579467604206 TAESWVIPAA 10 Unmodified _TAESWVIPAA_ 0 0 0 ENST00000318238.8_1_7:92775319-92776248:-|nuORF ENST00000318238.8_1_7:92775319-92776248:-|nuORF ENST00000318238.8_1_7:92775319-92776248:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2617797851562 2 522.771657 1043.52876 0.94691 0.00049502 -3.7422 -0.0019563 -2.7953 -0.0014613 522.7685822314778 25.442 0.45512 23.794 23.545 24 -1.6482 21 12 2 0 0 0 0.77872 1 4468 4468 26.884 2.2098 1 746090 44446 8692 29543 29563 43786 43786 0.008737502063240754 TAETSVKPS 9 Unmodified _TAETSVKPS_ 0 0 0 IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant;ENSG00000152580|ENST00000282466|IGSF10;IGSF10|p.N1400Tfs*18|1|0.29|ENSG00000152580|chr3:151445782-151445782|T/-|frameshift_variant;IGSF10|p.K1527Rfs*29|1|0.18|ENSG00000152580|chr3:151445403-151445403|G/-|frameshift_variant IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2308654785156 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 39.976 1 37.486 36.986 37.986 -2.4896 0 0 0 0.23508 1 7142 7142 7.2892 0 1 44447 4932 29544 29564 43787 43787 0.0033318441828669165 TAEYTMLK 8 Unmodified _TAEYTMLK_ 0 0 0 REV__tr|U7SGN5|U7SGN5_FUSNUUracilphosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPE=3SV=1 REV__tr|U7SGN5|U7SGN5_FUSNUUracilphosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7396545410156 2 478.741511 955.468469 NaN NaN NaN NaN NaN NaN NaN 148.53 1 143.37 142.87 143.87 -5.1557 0 0 0 0.20135 1 28758 28758 24.021 8.1734 1 + 44448 24878 29545 29565 43788 43788 -0.01104683448409105 TAFAVPTSSV 10 Unmodified _TAFAVPTSSV_ 0 0 0 ENST00000587016.5_1_19:4501842-4502019:+|nuORF ENST00000587016.5_1_19:4501842-4502019:+|nuORF ENST00000587016.5_1_19:4501842-4502019:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25811767578125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 83.203 1 83.203 82.703 83.703 0 0 0 0 2.8426 1 16223 16223 3.5927 0 1 44449 11557 29546 29566 43789 43789 0.012100613149982564 TAFEVEED 8 Unmodified _TAFEVEED_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.3138427734375 3 313.802912 938.386907 -0.51192 -0.00016064 2.2654 0.0007109 1.7535 0.00055026 313.80356845764976 35.01 0.38649 32.616 32.388 32.774 -2.3938 16 10 2 0 0 0 0.83982 1 6407 6407 1.6526 0 1 452150 44450 5525 29547 29567 43790 43790 -0.08475087606655052 TAFEVEED 8 Unmodified _TAFEVEED_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 313.802912 938.386907 0.17739 5.5665E-05 2.9979 0.00094075 3.1753 0.00099642 313.8033475137969 34.921 0.41885 32.668 32.392 32.811 -2.2527 0.02593 0.00039133 NaN 1.6526 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 452170 44451 5525 29547 29567 -0.08475087606655052 TAFKEGPDP 9 Unmodified _TAFKEGPDP_ 0 0 0 REV__tr|U7T5J0|U7T5J0_FUSNUGlycolateoxidase,subunitGlcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00166PE=4SV=1 REV__tr|U7T5J0|U7T5J0_FUSNUGlycolateoxidase,subunitGlcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00166PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23370361328125 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 20.307 1 20.307 19.807 20.807 0 0 0 0 0.23508 1 3356 3356 10.824 0 1 + 44452 25414 29548 29568 43791 43791 -0.02654798236130773 TAFKKLRV 8 Unmodified _TAFKKLRV_ 0 0 0 ENSG00000132823|ENST00000255174|OSER1 ENSG00000132823|ENST00000255174|OSER1 ENSG00000132823|ENST00000255174|OSER1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.86785888671875 3 321.543038 961.607286 -0.51121 -0.00016438 0.29455 9.4711E-05 -0.21666 -6.9667E-05 321.54305297211334 19.387 0.20991 19.387 19.276 19.486 0 9 5 2 0 0 0 1.0277 1 3160 3160 0.40072 0 1 474990 44453 3766 29549 29569 43792 43792 0.12494647302094108 TAFKKPAH 8 Unmodified _TAFKKPAH_ 0 0 0 ENST00000395066.7_1_15:74907619-74907901:+|nuORF ENST00000395066.7_1_15:74907619-74907901:+|nuORF ENST00000395066.7_1_15:74907619-74907901:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.2572326660156 2 450.25852 898.502486 NaN NaN NaN NaN NaN NaN NaN 65.602 1 62.555 62.055 63.055 -3.047 0 0 0 0.21486 1 12700 12700 10.183 3.8293 1 44454 9423 29550 29570 43793 43793 0.04917525825510438 TAFTAQQLEA 10 Unmodified _TAFTAQQLEA_ 0 0 0 DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant;ENSG00000197587|ENST00000360032|DMBX1;nc|ENSG00000197587|Q8NFW5|DMBX1 DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.275390625 2 540.272021 1078.52949 -0.050773 -2.7431E-05 -0.012189 -6.5855E-06 -0.062962 -3.4017E-05 540.2719604723553 67.844 0.9558 67.844 67.368 68.324 0 71 26 4 0 0 0 0.58591 2 13093 13093;13101 22.658 8.752 1 18193000 44455 851 29551 29571 43794;43795 43794 -0.0066345514460408594 TAFTAQQLEA 10 Unmodified _TAFTAQQLEA_ 0 0 0 DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant;ENSG00000197587|ENST00000360032|DMBX1;nc|ENSG00000197587|Q8NFW5|DMBX1 DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2750244140625 2 540.272021 1078.52949 0.42752 0.00023098 -0.41925 -0.00022651 0.0082715 4.4689E-06 540.2717944448862 71.48 0.87927 67.853 67.353 68.233 -3.6275 52 24 3 0 0 0 0.67011 1 13481 13481 16.149 2.2431 1 5490500 44456 851 29551 29571 43796 43796 -0.0066345514460408594 TAFTAQQLEA 10 Unmodified _TAFTAQQLEA_ 0 0 0 DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant;ENSG00000197587|ENST00000360032|DMBX1;nc|ENSG00000197587|Q8NFW5|DMBX1 DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2744140625 2 540.272021 1078.52949 0.43535 0.00023521 -0.62708 -0.00033879 -0.19173 -0.00010359 540.2716323921825 71.346 0.88075 67.879 67.521 68.402 -3.467 56 24 3 0 0 0 0.67011 1 13506 13506 16.149 2.2431 1 6341800 44457 851 29551 29571 43797 43797 -0.0066345514460408594 TAFVAFYEPP 10 Unmodified _TAFVAFYEPP_ 0 0 0 REV__DNAH6|p.D772Y|1|0.32|ENSG00000115423|chr2:84584083-84584083|G/T|missense_variant REV__DNAH6|p.D772Y|1|0.32|ENSG00000115423|chr2:84584083-84584083|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2191162109375 3 381.19033 1140.54916 0.40093 0.00015283 0.14246 5.4305E-05 0.54339 0.00020713 381.19038536498806 22.288 1.1501 20.814 20.266 21.417 -1.4742 47 32 2 0 0 0 0.76216 1 3895 3895 1.9064 0.062138 1 636290 + 44458 13714 29552 29572 43798 43798 -0.015490791338379495 TAFWTLTF 8 Unmodified _TAFWTLTF_ 0 0 0 REV__nc|ENSG00000183780|Q8IY50|SLC35F3 REV__nc|ENSG00000183780|Q8IY50|SLC35F3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.0134582519531 3 329.504249 985.490919 -0.40454 -0.0001333 -1.0596 -0.00034914 -1.4641 -0.00048244 329.504057404206 29.569 0.42001 29.569 29.329 29.749 0 18 11 2 0 0 0 1.0265 1 5314 5314 0.40072 0 1 782900 + 44459 18863 29553 29573 43799 43799 -0.0024071598847967834 TAFWTLTF 8 Unmodified _TAFWTLTF_ 0 0 0 REV__nc|ENSG00000183780|Q8IY50|SLC35F3 REV__nc|ENSG00000183780|Q8IY50|SLC35F3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 329.504249 985.490919 -0.1932 -6.366E-05 -0.90939 -0.00029965 -1.1026 -0.00036331 329.5039721381683 31.505 0.35271 29.356 29.162 29.514 -2.1483 -0.10626 3.93E-05 NaN 0.40072 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 790050 + 44460 18863 29553 29573 -0.0024071598847967834 TAGAPEAQW 9 Unmodified _TAGAPEAQW_ 0 0 0 REV__ENST00000467075.1_1_1:24018334-24018445:+|nuORF REV__ENST00000467075.1_1_1:24018334-24018445:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2465515136719 2 465.719424 929.424296 0.010869 5.0618E-06 -0.086325 -4.0203E-05 -0.075456 -3.5142E-05 465.71950591380084 52.745 0.5983 49.657 49.334 49.932 -3.0876 19 16 2 0 0 0 0.80264 1 9736 9736 12.241 10.181 1 1027000 + 44461 21975 29554 29574 43800 43800 -0.043239515503842085 TAGDLGVTVVL 11 Unmodified _TAGDLGVTVVL_ 0 0 0 REV__nc|ENSG00000129566|Q99973-2|TEP1 REV__nc|ENSG00000129566|Q99973-2|TEP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.269287109375 2 522.800414 1043.58628 0.22398 0.00011709 -0.093479 -4.8871E-05 0.1305 6.8224E-05 522.8005105015928 85.329 0.59698 85.329 84.942 85.539 0 24 16 2 0 0 0 0.83822 1 16591 16591 19.362 8.5624 1 1644000 + 44462 15967 29555 29575 43801 43801 0.06622592411918049 TAGDLGVTVVL 11 Unmodified _TAGDLGVTVVL_ 0 0 0 REV__nc|ENSG00000129566|Q99973-2|TEP1 REV__nc|ENSG00000129566|Q99973-2|TEP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2801513671875 2 522.800414 1043.58628 0.26196 0.00013695 -0.0078086 -4.0824E-06 0.25416 0.00013287 522.8003950636589 88.952 0.59804 85.201 84.743 85.341 -3.7501 22 16 2 0 0 0 0.83822 1 16992 16992 14.405 0 1 1036700 + 44463 15967 29555 29575 43802 43802 0.06622592411918049 TAGEAEIAEA 10 Unmodified _TAGEAEIAEA_ 0 0 0 REV__ENST00000485265.1_1_3:41277322-41278230:+|nuORF REV__ENST00000485265.1_1_3:41277322-41278230:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2536315917969 2 481.227279 960.440005 0.23364 0.00011243 -0.28315 -0.00013626 -0.049513 -2.3827E-05 481.22727926912927 64.578 1.1586 61.119 60.414 61.573 -3.4581 48 32 3 0 0 0 0.71097 1 11974 11974 10.074 10.074 1 1314700 + 44464 17991 29556 29576 43803 43803 -0.0417970982400675 TAGEVAEEN 9 Unmodified _TAGEVAEEN_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23187255859375 2 460.203804 918.393055 NaN NaN NaN NaN NaN NaN NaN 29.328 1 27.265 26.765 27.765 -2.0637 0 0 0 0.23508 1 4982 4982 10.824 0 1 + 44465 17178;24395 29557 29577 43804 43804 -0.06940569375137784 TAGGASSH 8 Unmodified _TAGGASSH_ 0 0 0 REV__ENST00000451737.1_1_10:96990486-96990897:-|nuORF REV__ENST00000451737.1_1_10:96990486-96990897:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.1734619140625 2 344.15646 686.298367 NaN NaN NaN NaN NaN NaN NaN 34.473 1 32.22 31.72 32.72 -2.2527 0 0 0 0.2343 1 6048 6048 0.62683 0 1 + 44466 21811 29558 29578 43805 43805 -0.05733038335802121 TAGHGDLDSRA 11 Unmodified _TAGHGDLDSRA_ 0 0 0 RASGRP3|p.R584G|1|0.58|ENSG00000152689|chr2:33558716-33558716|A/G|missense_variant RASGRP3|p.R584G|1|0.58|ENSG00000152689|chr2:33558716-33558716|A/G|missense_variant RASGRP3|p.R584G|1|0.58|ENSG00000152689|chr2:33558716-33558716|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.174072265625 3 367.175743 1098.5054 NaN NaN NaN NaN NaN NaN NaN 57.84 1 54.93 54.43 55.43 -2.9105 0 0 0 0.23698 1 11101 11101 1.2148 0.021489 1 44467 12867 29559 29579 43806 43806 -0.0399129557829383 TAGHNIDTCY 10 Unmodified _TAGHNIDTCY_ 0 0 0 nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;ENST00000486886.1_1_3:111680917-111693407:+|nuORF nc|ENSG00000144824|Q86SQ0-2|PHLDB2 nc|ENSG00000144824|Q86SQ0-2|PHLDB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7738647460938 2 547.732206 1093.44986 -0.11636 -6.3732E-05 0.014421 7.8988E-06 -0.10194 -5.5833E-05 547.7323169278412 38.922 1.2283 36.373 35.944 37.172 -2.5491 85 34 3 0 0 0 0.82238 1 7347 7347 17.113 11.381 1 6460300 44468 4581 29560 29580 43807 43807 -0.09312845090289557 TAGIPRSQ 8 Unmodified _TAGIPRSQ_ 0 0 0 KLK15|p.S156I|1|0.14|ENSG00000174562|chr19:50826892-50826892|C/A|missense_variant KLK15|p.S156I|1|0.14|ENSG00000174562|chr19:50826892-50826892|C/A|missense_variant KLK15|p.S156I|1|0.14|ENSG00000174562|chr19:50826892-50826892|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2530212402344 2 415.229959 828.445365 0.052815 2.1931E-05 -0.053633 -2.227E-05 -0.00081756 -3.3947E-07 415.22989198930844 25.417 0.45411 23.882 23.538 23.992 -1.5342 18 12 2 0 0 0 1.0011 1 4129 4129 4.3292 1.7518 1 983120 44469 12009 29561 29581 43808 43808 0.024280585491396778 TAGIPRSQ 8 Unmodified _TAGIPRSQ_ 0 0 0 KLK15|p.S156I|1|0.14|ENSG00000174562|chr19:50826892-50826892|C/A|missense_variant KLK15|p.S156I|1|0.14|ENSG00000174562|chr19:50826892-50826892|C/A|missense_variant KLK15|p.S156I|1|0.14|ENSG00000174562|chr19:50826892-50826892|C/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 415.229959 828.445365 0.081665 3.391E-05 0.21358 8.8684E-05 0.29524 0.00012259 415.22995678119827 24.06 0.54413 24.06 23.657 24.201 0 0.16047 4.7752E-05 NaN 4.3292 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1496600 44470 12009 29561 29581 0.024280585491396778 TAGIPRSQ 8 Unmodified _TAGIPRSQ_ 0 0 0 KLK15|p.S156I|1|0.14|ENSG00000174562|chr19:50826892-50826892|C/A|missense_variant KLK15|p.S156I|1|0.14|ENSG00000174562|chr19:50826892-50826892|C/A|missense_variant KLK15|p.S156I|1|0.14|ENSG00000174562|chr19:50826892-50826892|C/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 415.229959 828.445365 -0.47121 -0.00019566 0.46988 0.00019511 -0.0013241 -5.498E-07 415.23007079986576 25.609 0.38433 23.756 23.499 23.883 -1.8534 -0.14342 0.0002606 NaN 4.3292 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 838650 44471 12009 29561 29581 0.024280585491396778 TAGLACEDCGF 11 Unmodified _TAGLACEDCGF_ 0 0 0 REV__ENSG00000181444|ENST00000302017|ZNF467 REV__ENSG00000181444|ENST00000302017|ZNF467 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.791748046875 2 543.715167 1085.41578 0.073785 4.0118E-05 -0.33003 -0.00017944 -0.25625 -0.00013932 543.7146957635554 53.98 0.34732 50.845 50.593 50.94 -3.1352 14 9 2 0 0 0 0.68099 1 9895 9895 13.042 2.9685 1 1198700 + 44472 18732 29562 29582 43809 43809 -0.12351009573535521 TAGLACEDCGF 11 Unmodified _TAGLACEDCGF_ 0 0 0 REV__ENSG00000181444|ENST00000302017|ZNF467 REV__ENSG00000181444|ENST00000302017|ZNF467 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79296875 2 543.715167 1085.41578 0.044441 2.4163E-05 -0.4793 -0.0002606 -0.43486 -0.00023644 543.71488461288 54.06 0.55997 50.923 50.467 51.027 -3.1377 23 15 2 0 0 0 0.86301 1 9947 9947 16.149 8.239 1 4562900 + 44473 18732 29562 29582 43810 43810 -0.12351009573535521 TAGLPHGKSIL 11 Unmodified _TAGLPHGKSIL_ 0 0 0 REV__nc|ENSG00000116171|P22307-3|SCP2 REV__nc|ENSG00000116171|P22307-3|SCP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.772705078125 2 547.321848 1092.62914 0.20903 0.00011441 0.39123 0.00021413 0.60026 0.00032853 547.3219674758691 88.959 0.48815 88.959 88.718 89.206 0 21 13 2 0 0 0 0.45291 1 17383 17383 32.037 0.76914 1 1815400 + 44474 15473 29563 29583 43811 43811 0.08653407259998858 TAGMAFSLFMQ 11 Unmodified _TAGMAFSLFMQ_ 0 0 0 REV__nc|ENSG00000179443|Q8NH95|OR13C6P REV__nc|ENSG00000179443|Q8NH95|OR13C6P MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2824096679688 2 602.280477 1202.5464 NaN NaN NaN NaN NaN NaN NaN 80.69 1 77.133 76.633 77.633 -3.557 0 0 0 0.23476 1 15758 15758 4.5289 0 1 + 44475 24189 29564 29584 43812 43812 -0.04676993854673128 TAGNKCPTHH 10 Unmodified _TAGNKCPTHH_ 0 0 0 REV__DLL1|p.K296T|1|0.11|ENSG00000198719|chr6:170285399-170285399|T/G|missense_variant REV__DLL1|p.K296T|1|0.11|ENSG00000198719|chr6:170285399-170285399|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2706909179688 2 533.248357 1064.48216 NaN NaN NaN NaN NaN NaN NaN 18.419 1 17.108 16.608 17.608 -1.3109 0 0 0 0.22588 1 2990 2990 8.1555 1.9497 1 + 44476 13695 29565 29585 43813 43813 -0.04750012896624867 TAGNTIAIF 9 Unmodified _TAGNTIAIF_ 0 0 0 REV__ENSG00000144909|ENST00000296220|OSBPL11 REV__ENSG00000144909|ENST00000296220|OSBPL11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7472839355469 2 454.247818 906.481082 0.5139 0.00023344 -0.46602 -0.00021169 0.047881 2.175E-05 454.24745835764685 76.677 1.0532 76.677 76.131 77.185 0 51 29 2 0 0 0 0.74655 1 14806 14806 10.824 0 1 2424000 + 44477 16812 29566 29586 43814 43814 0.024100960061218757 TAGPPHAAPP 10 Unmodified _TAGPPHAAPP_ 0 0 0 REV__ENSG00000130700|ENST00000252997|GATA5 REV__ENSG00000130700|ENST00000252997|GATA5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2384033203125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 53.728 1 50.845 50.345 51.345 -2.8837 0 0 0 0.22535 1 10237 10237 20.454 4.6064 1 + 44478 16026 29567 29587 43815 43815 0.00036345066178000707 TAGPTSLDL 9 Unmodified _TAGPTSLDL_ 0 0 0 nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA;CDC42BPA|p.A1183*|1|0.41|ENSG00000143776|chr1:227031454-227031461|TGTCTGCT/-|frameshift_variant;nc|ENSG00000143776|Q5VT25-3|CDC42BPA;CDC42BPA|p.T746Nfs*8|1|0.24|ENSG00000143776|chr1:227101004-227101005|-/T|frameshift_variant;CDC42BPA|p.V770Cfs*3|1|0.23|ENSG00000143776|chr1:227091934-227091934|T/-|frameshift_variant nc|ENSG00000143776|Q5VT25-4|CDC42BPA nc|ENSG00000143776|Q5VT25-4|CDC42BPA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2176513671875 2 437.729458 873.444362 0.37154 0.00016263 -0.47266 -0.0002069 -0.10112 -4.4263E-05 437.72916466683546 41.887 0.49749 41.887 41.653 42.15 0 18 13 2 0 0 0 0.65155 1 7848 7848 15.847 0 1 599720 44479 4518 29568 29588 43816 43816 0.0025779938957839477 TAGTSCSSR 9 Unmodified _TAGTSCSSR_ 0 0 0 REV__ENST00000355703.3_1_11:65402051-65403000:+|nuORF REV__ENST00000355703.3_1_11:65402051-65403000:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.8916320800781 2 435.192716 868.37088 0.77322 0.0003365 -0.13542 -5.8933E-05 0.6378 0.00027757 435.1925875808343 23.963 0.62629 22.409 22.151 22.778 -1.5532 31 17 2 0 0 0 0.88048 1 4225 4225 1.6526 1.6526 1 1085000 + 44480 20797 29569 29589 43817 43817 -0.06857072324544333 TAGTSCSSR 9 Unmodified _TAGTSCSSR_ 0 0 0 REV__ENST00000355703.3_1_11:65402051-65403000:+|nuORF REV__ENST00000355703.3_1_11:65402051-65403000:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 435.192716 868.37088 0.16578 7.2148E-05 0.66791 0.00029067 0.83369 0.00036282 435.192944726042 22.757 0.73279 22.757 22.293 23.026 0 0.36187 9.2276E-05 NaN 1.6526 38 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2264100 + 44481 20797 29569 29589 -0.06857072324544333 TAGTSCSSR 9 Unmodified _TAGTSCSSR_ 0 0 0 REV__ENST00000355703.3_1_11:65402051-65403000:+|nuORF REV__ENST00000355703.3_1_11:65402051-65403000:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 435.192716 868.37088 -0.057692 -2.5107E-05 0.75559 0.00032883 0.6979 0.00030372 435.1930479209838 23.777 0.65463 22.243 22.06 22.714 -1.5342 -0.15211 0.00016859 NaN 1.6526 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1038200 + 44482 20797 29569 29589 -0.06857072324544333 TAGTSCSSR 9 Unmodified _TAGTSCSSR_ 0 0 0 REV__ENST00000355703.3_1_11:65402051-65403000:+|nuORF REV__ENST00000355703.3_1_11:65402051-65403000:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 435.192716 868.37088 -0.52026 -0.00022641 1.184 0.00051529 0.66379 0.00028888 435.19314588891666 24.025 0.48629 22.172 21.985 22.471 -1.8534 -0.2238 0.00054151 NaN 1.6526 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 626660 + 44483 20797 29569 29589 -0.06857072324544333 TAGVDGHSW 9 Unmodified _TAGVDGHSW_ 0 0 0 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2489929199219 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 108.08 1 103.76 103.26 104.26 -4.32 0 0 0 0.22621 1 21294 21294 15.847 6.4997 1 44484 2750 29570 29590 43818 43818 -0.06317122210191428 TAGVMRGPM 9 Unmodified _TAGVMRGPM_ 0 0 0 REV__ENST00000510885.2_1_4:57459582-57460608:+|nuORF REV__ENST00000510885.2_1_4:57459582-57460608:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2476806640625 2 460.228048 918.441542 0.19906 9.1614E-05 -1.0422 -0.00047967 -0.84317 -0.00038805 460.22760648378363 20.38 1.4726 20.38 19.825 21.298 0 101 41 5 0 0 0 0.68435 1 3313 3313 7.2892 0.56607 1 75994000 + 44485 22541 29571 29591 43819 43819 -0.02094070540579196 TAGVPGLPAF 10 Unmodified _TAGVPGLPAF_ 0 0 0 REV__ENST00000595369.1_1_19:6760922-6763743:-|nuORF REV__ENST00000595369.1_1_19:6760922-6763743:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25823974609375 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 47.233 1 44.283 43.783 44.783 -2.9499 0 0 0 0.22588 1 8618 8618 10.824 0.75 1 + 44486 23374 29572 29592 43820 43820 0.034706863857991266 TAGVSATL 8 Unmodified _TAGVSATL_ 0 0 0 REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.1040954589844 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 103.81 1 99.462 98.962 99.962 -4.346 0 0 0 0.21486 1 19886 19886 2.3027 0 1 + 44487 20418 29573 29593 43821 43821 0.015661625349594033 TAGWALGYGW 10 Unmodified _TAGWALGYGW_ 0 0 0 REV__ENSG00000147027|ENST00000275954|TMEM47 REV__ENSG00000147027|ENST00000275954|TMEM47 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2615966796875 2 541.258717 1080.50288 NaN NaN NaN NaN NaN NaN NaN 76.088 1 76.088 75.588 76.588 0 0 0 0 0.22526 1 14785 14785 21.747 1.3321 1 + 44488 16915 29574 29594 43822 43822 -0.03415099245307829 TAHADKGTK 9 Unmodified _TAHADKGTK_ 0 0 0 REV__ENSG00000176679|ENST00000321217|TGIF2LY REV__ENSG00000176679|ENST00000321217|TGIF2LY MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1651916503906 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 128.51 1 123.77 123.27 124.27 -4.7408 0 0 0 0.23508 1 24730 24730 1.0715 0 1 + 44489 17155 29575 29595 43823 43823 0.010754262322734576 TAHADKGTK 9 Unmodified _TAHADKGTK_ 0 0 0 REV__ENSG00000176679|ENST00000321217|TGIF2LY REV__ENSG00000176679|ENST00000321217|TGIF2LY MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16571044921875 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 178.52 1 173.61 173.11 174.11 -4.9088 0 0 0 0.19623 1 35612 35612 0.029283 0 1 + 44490 17155 29575 29595 43824 43824 0.010754262322734576 TAHCRGGTH 9 Unmodified _TAHCRGGTH_ 0 0 0 ENST00000517938.5_2_5:154214216-154230085:-|nuORF ENST00000517938.5_2_5:154214216-154230085:-|nuORF ENST00000517938.5_2_5:154214216-154230085:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.3134460449219 3 313.81197 938.414082 -0.27922 -8.7621E-05 -0.89051 -0.00027945 -1.1697 -0.00036707 313.8118359013296 33.378 0.41323 31.162 31.01 31.423 -2.2158 19 11 2 0 0 0 0.88284 1 5862 5862 0.96228 0 1 439270 44491 10801 29576 29596 43825 43825 -0.057588377565934934 TAHELNWQ 8 Unmodified _TAHELNWQ_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;REV__SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.9988708496094 3 333.494524 997.461744 -0.74657 -0.00024898 0.62581 0.00020871 -0.12075 -4.027E-05 333.49469746993447 51.493 0.3139 48.441 48.206 48.52 -3.0517 13 8 2 0 0 0 1.0267 1 9445 9445 1.4819 0.51963 1 381710 + 44492 14106;24761;24760 29577 29597 43826 43826 -0.0370886028475752 TAHPRVVPC 9 Unmodified _TAHPRVVPC_ 0 0 0 REV__RGS3|p.R851Gfs*5|1|0.42|ENSG00000138835|chr9:113583958-113583958|C/-|frameshift_variant REV__RGS3|p.R851Gfs*5|1|0.42|ENSG00000138835|chr9:113583958-113583958|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2577819824219 2 490.260736 978.50692 NaN NaN NaN NaN NaN NaN NaN 86.958 1 83.231 82.731 83.731 -3.727 0 0 0 0.19674 1 17001 17001 2.6312 2.3798 1 + 44493 16498 29578 29598 43827 43827 0.016806669767788662 TAIDVTKPA 9 Unmodified _TAIDVTKPA_ 0 0 0 REV__ENST00000324822.15_1_17:7293274-7293649:-|nuORF REV__ENST00000324822.15_1_17:7293274-7293649:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2245178222656 2 458.260925 914.507297 -0.17018 -7.7987E-05 0.45353 0.00020784 0.28335 0.00012985 458.2610473917214 48.065 0.43616 45.196 44.946 45.382 -2.869 24 11 3 0 0 0 0.45788 1 9089 9089 39.95 3.4435 1 2417300 + 44494 20573 29579 29599 43828 43828 0.04662365177614447 TAIDVTKPA 9 Unmodified _TAIDVTKPA_ 0 0 0 REV__ENST00000324822.15_1_17:7293274-7293649:-|nuORF REV__ENST00000324822.15_1_17:7293274-7293649:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2249450683594 2 458.260925 914.507297 -0.039154 -1.7943E-05 0.4563 0.0002091 0.41715 0.00019116 458.2610266189994 48.234 0.45246 45.292 45.04 45.493 -2.9421 22 12 2 0 0 0 0.45788 1 8812 8812 32.786 8.7651 1 2152000 + 44495 20573 29579 29599 43829 43829 0.04662365177614447 TAIENLPGF 9 Unmodified _TAIENLPGF_ 0 0 0 TADA2B|p.A340T|1|0.35|ENSG00000173011|chr4:7054809-7054809|G/A|missense_variant TADA2B|p.A340T|1|0.35|ENSG00000173011|chr4:7054809-7054809|G/A|missense_variant TADA2B|p.A340T|1|0.35|ENSG00000173011|chr4:7054809-7054809|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2549133300781 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 52.5 1 49.405 48.905 49.905 -3.0954 0 0 0 0.22251 1 9691 9691 16.942 0 1 44496 25815 29580 29600 43830 43830 0.00982078660570096 TAIFAFARI 9 Unmodified _TAIFAFARI_ 0 0 0 PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant;ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant PTPRQ|p.N2031Kfs*10|1|0.46|ENSG00000139304|chr12:80652805-80652806|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.06201171875 3 337.19916 1008.57565 NaN NaN NaN NaN NaN NaN NaN 40.815 1 38.326 37.826 38.826 -2.4896 0 0 0 0.23508 1 7315 7315 2.7352 0.89096 1 44497 4236 29581 29601 43831 43831 0.07170654548122002 TAIFTDHWYET 11 Unmodified _TAIFTDHWYET_ 0 0 0 nc|ENSG00000152154|Q8NBL3-2|TMEM178A;ENSG00000152154|ENST00000281961|TMEM178A nc|ENSG00000152154|Q8NBL3-2|TMEM178A nc|ENSG00000152154|Q8NBL3-2|TMEM178A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53179931640625 3 461.878704 1382.61428 -0.13892 -6.4165E-05 0.079287 3.6621E-05 -0.059634 -2.7544E-05 462.2129808800856 67.28 0.42555 67.28 67.124 67.549 0 19 11 2 0 0 0 0.96165 1 13031 13031 2.4348 2.4348 1 1547900 44498 4905 29582 29602 43832 43832 -0.06172129398646575 TAIHPPPL 8 Unmodified _TAIHPPPL_ 0 0 0 REV__nc|ENSG00000142920|Q96A70-2|AZIN2 REV__nc|ENSG00000142920|Q96A70-2|AZIN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 423.24749755859375 2 423.247621 844.480688 NaN NaN NaN NaN NaN NaN NaN 50.675 1 50.675 50.175 51.175 0 0 0 0 0.22834 1 9601 9601 1.7423 0 1 + 44499 24079 29583 29603 43833 43833 0.052227210769387966 TAIIPTCQLRK 11 Unmodified _TAIIPTCQLRK_ 0 0 0 ENST00000493268.1_1_7:154595624-154650193:+|nuORF ENST00000493268.1_1_7:154595624-154650193:+|nuORF ENST00000493268.1_1_7:154595624-154650193:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.778076171875 2 622.36319 1242.71183 0.59839 0.00037241 -1.7905 -0.0011143 -1.1921 -0.0007419 622.8633526215644 69.382 0.56593 65.846 65.688 66.253 -3.5362 20 15 2 0 0 0 0.94227 1 13057 13057 4.5289 3.6645 1 3225200 44500 10544 29584 29604 43834 43834 0.10017980996440201 TAIKDGVKY 9 Unmodified _TAIKDGVKY_ 0 0 0 REV__ENSG00000151005|ENST00000280605|TKTL2 REV__ENSG00000151005|ENST00000280605|TKTL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.0155944824219 3 332.190442 993.549496 -0.27997 -9.3005E-05 0.069 2.2921E-05 -0.21097 -7.0084E-05 332.1904109594712 29.018 0.62497 27.022 26.694 27.319 -1.9962 49 17 4 0 0 0 0.8825 1 4965 4965 0.23584 0.23584 1 3147800 + 44501 17049 29585 29605 43835 43835 0.05246340585995313 TAIKDGVKY 9 Unmodified _TAIKDGVKY_ 0 0 0 REV__ENSG00000151005|ENST00000280605|TKTL2 REV__ENSG00000151005|ENST00000280605|TKTL2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 332.190442 993.549496 -0.3702 -0.00012298 0.227 7.5408E-05 -0.1432 -4.7569E-05 332.19047176679504 27.288 0.62291 27.288 26.974 27.597 0 0.16411 0.00039563 NaN 0.23584 54 17 4 NaN NaN NaN NaN 0 NaN NaN 0 4918000 + 44502 17049 29585 29605 0.05246340585995313 TAIKDGVKY 9 Unmodified _TAIKDGVKY_ 0 0 0 REV__ENSG00000151005|ENST00000280605|TKTL2 REV__ENSG00000151005|ENST00000280605|TKTL2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 332.190442 993.549496 0.30679 0.00010191 -0.45801 -0.00015215 -0.15122 -5.0234E-05 332.19022032306174 28.857 0.70022 27.102 26.736 27.436 -1.7552 -0.021754 -0.00028704 NaN 0.23584 50 19 4 NaN NaN NaN NaN 0 NaN NaN 0 4292100 + 44503 17049 29585 29605 0.05246340585995313 TAIKKVIASL 10 Unmodified _TAIKKVIASL_ 0 0 0 MGAT4C|p.L276Yfs*2|1|0.09|ENSG00000182050|chr12:85979899-85979899|A/-|frameshift_variant;MGAT4C|p.N300Mfs*2|1|0.24|ENSG00000182050|chr12:85979827-85979827|T/-|frameshift_variant;ENSG00000182050|ENST00000611864|MGAT4C;nc|ENSG00000182050|Q9UBM8-2|MGAT4C MGAT4C|p.L276Yfs*2|1|0.09|ENSG00000182050|chr12:85979899-85979899|A/-|frameshift_variant MGAT4C|p.L276Yfs*2|1|0.09|ENSG00000182050|chr12:85979899-85979899|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2825927734375 2 522.344792 1042.67503 NaN NaN NaN NaN NaN NaN NaN 133.2 1 133.2 132.7 133.7 0 0 0 0 0.22588 1 26349 26349 6.7232 1.9672 1 44504 6761 29586 29606 43836 43836 0.15540052442202068 TAIKSEKPIKE 11 Unmodified _TAIKSEKPIKE_ 0 0 0 REV__nc|ENSG00000186300|Q8NEP9-2|ZNF555 REV__nc|ENSG00000186300|Q8NEP9-2|ZNF555 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7530517578125 2 622.366453 1242.71835 NaN NaN NaN NaN NaN NaN NaN 58.771 1 55.565 55.065 56.065 -3.2052 0 0 0 0.23379 1 10973 10973 5.2969 1.3525 1 + 44505 19026 29587 29607 43837 43837 0.10670197428817119 TAISMAGTAP 10 Unmodified _TAISMAGTAP_ 0 0 0 REV__FAM71B|p.L538*|2|0.27|ENSG00000170613|chr5:157162652-157162652|A/-|frameshift_variant REV__FAM71B|p.L538*|2|0.27|ENSG00000170613|chr5:157162652-157162652|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2297058105469 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 25.728 1 24.08 23.58 24.58 -1.6482 0 0 0 0.22544 1 4519 4519 19.257 2.3147 1 + 44506 18170 29588 29608 43838 43838 -0.014418541082136471 TAITLRILKI 10 Unmodified _TAITLRILKI_ 0 0 0 SCN7A|p.R209I|2|0.23|ENSG00000136546|chr2:166470653-166470653|C/A|missense_variant SCN7A|p.R209I|2|0.23|ENSG00000136546|chr2:166470653-166470653|C/A|missense_variant SCN7A|p.R209I|2|0.23|ENSG00000136546|chr2:166470653-166470653|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2052917480469 3 381.26042 1140.75943 NaN NaN NaN NaN NaN NaN NaN 14.674 1 13.56 13.06 14.06 -1.1142 0 0 0 0.22588 1 2215 2215 0.69767 0 1 44507 25645 29589 29609 43839 43839 0.1946800325897584 TAITMPQAS 9 Unmodified _TAITMPQAS_ 0 0 0 REV__ENST00000396593.6_2_16:8948778-8948955:-|nuORF REV__ENST00000396593.6_2_16:8948778-8948955:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2293395996094 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 32.731 1 30.585 30.085 31.085 -2.1468 0 0 0 0.23508 1 5688 5688 11.64 0.81637 1 + 44508 21281 29590 29610 43840 43840 -0.014418541082136471 TAKCSKKY 8 Unmodified _TAKCSKKY_ 0 0 0 nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A nc|ENSG00000066933|B2RTY4-5|MYO9A nc|ENSG00000066933|B2RTY4-5|MYO9A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1702575683594 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 39.663 1 39.663 39.163 40.163 0 0 0 0 0.21486 1 7367 7367 6.7232 0 1 44509 1381 29591 29611 43841 43841 0.018144425083505666 TAKCSKKY 8 Unmodified _TAKCSKKY_ 0 0 0 nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A nc|ENSG00000066933|B2RTY4-5|MYO9A nc|ENSG00000066933|B2RTY4-5|MYO9A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1693420410156 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 155.6 1 150.35 149.85 150.85 -5.2526 0 0 0 0.2396 1 30176 30176 0 0 1 44510 1381 29591 29611 43842 43842 0.018144425083505666 TAKFVRGG 8 Unmodified _TAKFVRGG_ 0 0 0 REV__ENSG00000169933|ENST00000675598|FRMPD4 REV__ENSG00000169933|ENST00000675598|FRMPD4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 418.24371337890625 2 418.24287 834.471186 NaN NaN NaN NaN NaN NaN NaN 63.839 1 60.842 60.342 61.342 -2.9975 0 0 0 0.21486 1 12341 12341 2.5775 0 1 + 44511 18130 29592 29612 43843 43843 0.04732952791437128 TAKGERPP 8 Unmodified _TAKGERPP_ 0 0 0 ENST00000556310.1_1_14:78200380-78227103:+|nuORF ENST00000556310.1_1_14:78200380-78227103:+|nuORF ENST00000556310.1_1_14:78200380-78227103:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 428.1338195800781 2 428.237784 854.461016 0.25737 0.00011022 -0.47793 -0.00020467 -0.22056 -9.4452E-05 428.2375559925605 31.455 1.1622 29.429 28.952 30.114 -2.0264 52 32 3 0 0 0 1.0249 1 5338 5338 2.5775 0 1 8779500 44512 11239 29593 29613 43844 43844 0.027963450661786737 TAKGERPP 8 Unmodified _TAKGERPP_ 0 0 0 ENST00000556310.1_1_14:78200380-78227103:+|nuORF ENST00000556310.1_1_14:78200380-78227103:+|nuORF ENST00000556310.1_1_14:78200380-78227103:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 428.237784 854.461016 0.15341 6.5695E-05 -0.18589 -7.9605E-05 -0.032483 -1.3911E-05 428.2376382553023 29.545 0.48483 29.545 29.297 29.782 0 0.08235 0.00012125 NaN 2.5775 37 13 3 NaN NaN NaN NaN 0 NaN NaN 0 5651600 44513 11239 29593 29613 0.027963450661786737 TAKGERPP 8 Unmodified _TAKGERPP_ 0 0 0 ENST00000556310.1_1_14:78200380-78227103:+|nuORF ENST00000556310.1_1_14:78200380-78227103:+|nuORF ENST00000556310.1_1_14:78200380-78227103:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 428.237784 854.461016 0.13893 5.9497E-05 -0.30521 -0.0001307 -0.16628 -7.1206E-05 428.2376281699338 31.622 0.49241 29.391 29.129 29.621 -2.2305 -0.070705 1.9052E-05 NaN 2.5775 35 13 3 NaN NaN NaN NaN 0 NaN NaN 0 8434600 44514 11239 29593 29613 0.027963450661786737 TAKGERPP 8 Unmodified _TAKGERPP_ 0 0 0 ENST00000556310.1_1_14:78200380-78227103:+|nuORF ENST00000556310.1_1_14:78200380-78227103:+|nuORF ENST00000556310.1_1_14:78200380-78227103:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 428.237784 854.461016 0.24053 0.000103 -0.35976 -0.00015406 -0.11923 -5.1057E-05 428.2375961609231 31.632 0.56249 29.484 29.196 29.759 -2.1483 0.021479 -2.7666E-05 NaN 2.5775 40 15 3 NaN NaN NaN NaN 0 NaN NaN 0 5683900 44515 11239 29593 29613 0.027963450661786737 TAKGNGGL 8 Unmodified _TAKGNGGL_ 0 0 0 REV__CON__Q99PS0 REV__CON__Q99PS0 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 359.19671630859375 2 359.198128 716.381703 NaN NaN NaN NaN NaN NaN NaN 63.66 1 60.663 60.163 61.163 -2.9975 0 0 0 0.23749 1 12305 12305 0.12286 0 1 + + 44516 13559 29594 29614 43845 43845 0.012166981120458331 TAKKGGRG 8 Unmodified _TAKKGGRG_ 0 0 0 ENST00000493894.1_1_22:29661211-29661415:-|nuORF ENST00000493894.1_1_22:29661211-29661415:-|nuORF ENST00000493894.1_1_22:29661211-29661415:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7097473144531 2 387.732669 773.450785 NaN NaN NaN NaN NaN NaN NaN 26.634 1 24.712 24.212 25.212 -1.9222 0 0 0 0.21486 1 4419 4419 4.756 2.1785 1 44517 10552 29595 29615 43846 43846 0.05499782131619213 TAKKGKTT 8 Unmodified _TAKKGKTT_ 0 0 0 REV__ENSG00000157578|ENST00000288350|LCA5L REV__ENSG00000157578|ENST00000288350|LCA5L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 417.2225646972656 2 417.75581 833.497067 -0.25239 -0.00010544 -0.54963 -0.00022961 -0.80202 -0.00033505 417.7555254839044 62.608 0.31612 62.608 62.414 62.73 0 11 8 2 0 0 0 1.0271 1 12034 12034 2.5775 0 1 734370 + 44518 17299 29596 29616 43847 43847 0.07365802243032249 TAKKGKTT 8 Unmodified _TAKKGKTT_ 0 0 0 REV__ENSG00000157578|ENST00000288350|LCA5L REV__ENSG00000157578|ENST00000288350|LCA5L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 417.75581 833.497067 -0.035014 -1.4627E-05 -0.63071 -0.00026348 -0.66572 -0.00027811 417.7554882495981 65.958 0.3829 62.675 62.511 62.894 -3.2832 0.0057274 4.9505E-05 NaN 2.5775 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 575910 + 44519 17299 29596 29616 0.07365802243032249 TAKLHKKRL 9 Unmodified _TAKLHKKRL_ 0 0 0 REV__nc|ENSG00000124782|Q92766-5|RREB1 REV__nc|ENSG00000124782|Q92766-5|RREB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.778564453125 2 547.861475 1093.7084 NaN NaN NaN NaN NaN NaN NaN 60.25 1 60.25 59.75 60.75 0 0 0 0 0.23508 1 11548 11548 4.756 1.1595 1 + 44520 15794 29597 29617 43848 43848 0.16529099004787895 TAKLHKKRL 9 Unmodified _TAKLHKKRL_ 0 0 0 REV__nc|ENSG00000124782|Q92766-5|RREB1 REV__nc|ENSG00000124782|Q92766-5|RREB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7847290039062 2 547.861475 1093.7084 NaN NaN NaN NaN NaN NaN NaN 60.263 1 60.263 59.763 60.763 0 0 0 0 0.19632 1 11552 11552 0.0033805 0.0028161 1 + 44521 15794 29597 29617 43849 43849 0.16529099004787895 TAKMWTWR 8 Unmodified _TAKMWTWR_ 0 0 0 REV__ENST00000405315.8_2_19:49403351-49403540:+|nuORF REV__ENST00000405315.8_2_19:49403351-49403540:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2133483886719 3 360.520016 1078.53822 -0.25525 -9.2023E-05 4.0743 0.0014689 3.8191 0.0013769 360.52092584111773 20.868 0.20957 20.868 20.742 20.951 0 6 5 2 0 0 0 1.0197 1 3474 3474 5.7319 0.83484 1 145820 + 44522 21382 29598 29618 43850 43850 0.0020924001087223587 TAKNATLS 8 Unmodified _TAKNATLS_ 0 0 0 REV__ENSG00000135912|ENST00000392102|TTLL4 REV__ENSG00000135912|ENST00000392102|TTLL4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 403.200439453125 2 403.224342 804.434132 NaN NaN NaN NaN NaN NaN NaN 31.261 1 29.145 28.645 29.645 -2.1167 0 0 0 0.23487 1 5669 5669 0.30703 0 1 + 44523 16298 29599 29619 43851 43851 0.024092364550028833 TAKNYESIVFH 11 Unmodified _TAKNYESIVFH_ 0 0 0 REV__ENSG00000170369|ENST00000304725|CST2 REV__ENSG00000170369|ENST00000304725|CST2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21746826171875 3 436.890944 1307.651 NaN NaN NaN NaN NaN NaN NaN 19.316 1 19.316 18.816 19.816 0 0 0 0 0.23698 1 3152 3152 2.6312 0.72486 1 + 44524 18155 29600 29620 43852 43852 0.009481672178935696 TAKPKKAPKSP 11 Unmodified _TAKPKKAPKSP_ 0 0 0 HIST1H1E|p.A178T|1|0.14|ENSG00000168298|chr6:26156922-26156922|G/A|missense_variant HIST1H1E|p.A178T|1|0.14|ENSG00000168298|chr6:26156922-26156922|G/A|missense_variant HIST1H1E|p.A178T|1|0.14|ENSG00000168298|chr6:26156922-26156922|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.31103515625 2 576.858598 1151.70264 0.28002 0.00016153 -0.31712 -0.00018293 -0.037094 -2.1398E-05 577.3607214519692 35.361 0.10553 33.108 33.055 33.16 -2.2527 4 2 2 0 0 0 0.95337 1 6219 6219 2.9952 0 1 448060 44525 11905 29601 29621 43853 43853 0.1328595570246307 TAKQIKRQA 9 Unmodified _TAKQIKRQA_ 0 0 0 L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|51|3|sense L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|51|3|sense L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|51|3|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2807006835938 2 522.31964 1042.62473 NaN NaN NaN NaN NaN NaN NaN 30.971 1 28.896 28.396 29.396 -2.0743 0 0 0 0.23508 1 5319 5319 7.9102 3.9658 1 44526 12036 29602 29622 43854 43854 0.10511942837092647 TAKRSVVR 8 Unmodified _TAKRSVVR_ 0 0 0 TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2332763671875 2 458.787976 915.561398 0.39482 0.00018114 -0.059639 -2.7362E-05 0.33518 0.00015378 458.7878530374467 155.2 1.3496 149.95 149.51 150.86 -5.2526 110 37 4 0 0 0 8448 1 30148 30148 0.12286 0 1 50044000 44527 7343 29603 29623 43855 43855 0.10024002119860143 TAKVMCVAP 9 Unmodified _TAKVMCVAP_ 0 0 0 ENST00000554859.1_1_14:102262905-102263151:-|nuORF ENST00000554859.1_1_14:102262905-102263151:-|nuORF ENST00000554859.1_1_14:102262905-102263151:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24005126953125 2 460.240624 918.466695 0.21635 9.9575E-05 -1.6774 -0.00077199 -1.461 -0.00067241 460.2398651508732 37.616 0.44846 35.279 35.016 35.464 -2.3375 16 12 2 0 0 0 0.62102 1 6634 6634 11.64 6.4096 1 483580 44528 11226 29604 29624 43856 43856 0.004199842619868832 TALFYLAY 8 Unmodified _TALFYLAY_ 0 0 0 REV__ENSG00000177042|ENST00000397510|TMEM80 REV__ENSG00000177042|ENST00000397510|TMEM80 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7662353515625 2 481.255111 960.49567 0.084111 4.0479E-05 -1.0193 -0.00049055 -0.9352 -0.00045007 481.25468184900694 53.752 0.87826 50.654 50.029 50.907 -3.0972 38 24 3 0 0 0 0.69085 1 9848 9848 15.768 1.1865 1 3934500 + 44529 18535 29605 29625 43857 43857 0.013841681542771767 TALGDSRVP 9 Unmodified _TALGDSRVP_ 0 0 0 ENST00000567216.5_1_16:586060-586114:+|nuORF ENST00000567216.5_1_16:586060-586114:+|nuORF ENST00000567216.5_1_16:586060-586114:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2307434082031 2 458.248349 914.482145 0.31032 0.0001422 -0.13954 -6.3944E-05 0.17078 7.8261E-05 458.2483223004367 52.568 0.39099 52.568 52.394 52.785 0 18 10 2 0 0 0 0.39168 1 10036 10036 0.40827 0 1 2525500 44530 11379 29606 29626 43858 43858 0.02148310375048368 TALGFLGA 8 Unmodified _TALGFLGA_ 0 0 0 ENST00000421890.5_1_7:5862807-5863047:+|nuORF ENST00000421890.5_1_7:5862807-5863047:+|nuORF ENST00000421890.5_1_7:5862807-5863047:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2115173339844 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 15.28 1 13.926 13.426 14.426 -1.3534 0 0 0 0.21486 1 2093 2093 2.5775 0 1 44531 9674 29607 29627 43859 43859 0.027670567772474897 TALGGAPY 8 Unmodified _TALGGAPY_ 0 0 0 ENST00000429630.1_1_7:143077188-143077587:-|nuORF ENST00000429630.1_1_7:143077188-143077587:-|nuORF ENST00000429630.1_1_7:143077188-143077587:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2178039550781 2 375.195054 748.375555 NaN NaN NaN NaN NaN NaN NaN 58.365 1 55.113 54.613 55.613 -3.2517 0 0 0 0.21486 1 10845 10845 5.7604 0.52976 1 44532 9763 29608 29628 43860 43860 -0.008698201194761168 TALILAGIQTE 11 Unmodified _TALILAGIQTE_ 0 0 0 REV__nc|ENSG00000205268|Q13946-3|PDE7A REV__nc|ENSG00000205268|Q13946-3|PDE7A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.23431396484375 3 377.22029 1128.63904 NaN NaN NaN NaN NaN NaN NaN 14.354 1 13.24 12.74 13.74 -1.1142 0 0 0 0.22632 1 2147 2147 0 0 1 + 44533 19583 29609 29629 43861 43861 0.07986550474720389 TALIYQGDK 9 Unmodified _TALIYQGDK_ 0 0 0 REV__nc|ENSG00000115761|Q9BSC4-2|NOL10 REV__nc|ENSG00000115761|Q9BSC4-2|NOL10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.073974609375 3 336.850197 1007.52876 0.14754 4.9698E-05 -0.032365 -1.0902E-05 0.11517 3.8795E-05 336.8501613415125 26.446 0.42023 24.811 24.616 25.037 -1.6347 23 11 3 0 0 0 0.88109 1 4355 4355 2.086 0.60411 1 995010 + 44534 15449 29610 29630 43862 43862 0.02529750206326753 TALIYQGDK 9 Unmodified _TALIYQGDK_ 0 0 0 REV__nc|ENSG00000115761|Q9BSC4-2|NOL10 REV__nc|ENSG00000115761|Q9BSC4-2|NOL10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 336.850197 1007.52876 -0.35251 -0.00011874 0.27945 9.4133E-05 -0.073062 -2.4611E-05 336.8502420139976 24.787 0.33179 24.787 24.615 24.947 0 0.010914 -4.1214E-05 NaN 2.086 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1152600 + 44535 15449 29610 29630 0.02529750206326753 TALIYQGDK 9 Unmodified _TALIYQGDK_ 0 0 0 REV__nc|ENSG00000115761|Q9BSC4-2|NOL10 REV__nc|ENSG00000115761|Q9BSC4-2|NOL10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 336.850197 1007.52876 -0.62936 -0.000212 0.63937 0.00021537 0.01001 3.3717E-06 336.85035895331777 26.652 0.47854 24.73 24.469 24.947 -1.9222 -0.046162 0.0003225 NaN 2.086 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1061200 + 44536 15449 29610 29630 0.02529750206326753 TALLLASKY 9 Unmodified _TALLLASKY_ 0 0 0 ENSG00000157456|ENST00000288207|CCNB2 ENSG00000157456|ENST00000288207|CCNB2 ENSG00000157456|ENST00000288207|CCNB2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2648010253906 2 490.294768 978.574983 NaN NaN NaN NaN NaN NaN NaN 60.074 1 60.074 59.574 60.574 0 0 0 0 0.23508 1 11515 11515 7.9102 0.62092 1 44537 5127 29611 29631 43863 43863 0.08483815108422732 TALLRRSY 8 Unmodified _TALLRRSY_ 0 0 0 REV__nc|ENSG00000196408|Q8NFA2-4|NOXO1 REV__nc|ENSG00000196408|Q8NFA2-4|NOXO1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2563171386719 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 53.208 1 50.325 49.825 50.825 -2.8837 0 0 0 0.21486 1 10134 10134 8.5933 0.68312 1 + 44538 13418 29612 29632 43864 43864 0.07092582399991443 TALMKACKRG 10 Unmodified _TALMKACKRG_ 0 0 0 ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8 ENSG00000196199|ENST00000361479|MPHOSPH8 ENSG00000196199|ENST00000361479|MPHOSPH8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20159912109375 3 360.200178 1077.5787 NaN NaN NaN NaN NaN NaN NaN 67.855 1 64.528 64.028 65.028 -3.3268 0 0 0 0.22588 1 12800 12800 3.5871 0.85186 1 44539 7244 29613 29633 43865 43865 0.04301838338960806 TALPLLEAQ 9 Unmodified _TALPLLEAQ_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7304382324219 2 478.276575 954.538597 0.41999 0.00020087 0.32111 0.00015358 0.7411 0.00035445 478.27646479825364 123.86 1.0594 119.13 118.57 119.63 -4.731 72 29 4 0 0 0 0.7009 1 23716 23716 6.2058 0 1 9631300 44540 7957 29614 29634 43866 43866 0.0595093821170849 TALQEWQI 8 Unmodified _TALQEWQI_ 0 0 0 ENST00000565368.5_1_16:57474764-57481287:-|nuORF;ENST00000567518.5_1_16:57474764-57481287:-|nuORF ENST00000565368.5_1_16:57474764-57481287:-|nuORF ENST00000565368.5_1_16:57474764-57481287:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 329.99609375 3 330.174792 987.502546 0.31416 0.00010373 -0.60132 -0.00019854 -0.28716 -9.4814E-05 330.174566198526 30.855 1.0609 28.829 28.493 29.554 -2.0264 79 29 5 0 0 0 1.0265 1 5411 5411 3.9444 0 1 79109000 44541 11356 29615 29635 43867 43867 0.008294810348388637 TALQEWQI 8 Unmodified _TALQEWQI_ 0 0 0 ENST00000565368.5_1_16:57474764-57481287:-|nuORF;ENST00000567518.5_1_16:57474764-57481287:-|nuORF ENST00000565368.5_1_16:57474764-57481287:-|nuORF ENST00000565368.5_1_16:57474764-57481287:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 330.174792 987.502546 -0.39619 -0.00013081 0.097752 3.2275E-05 -0.29844 -9.8537E-05 330.17479149832405 29.002 0.94042 29.002 28.704 29.644 0 0.089948 0.00038025 NaN 3.9444 73 26 4 NaN NaN NaN NaN 0 NaN NaN 0 91177000 44542 11356 29615 29635 0.008294810348388637 TALQEWQI 8 Unmodified _TALQEWQI_ 0 0 0 ENST00000565368.5_1_16:57474764-57481287:-|nuORF;ENST00000567518.5_1_16:57474764-57481287:-|nuORF ENST00000565368.5_1_16:57474764-57481287:-|nuORF ENST00000565368.5_1_16:57474764-57481287:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 330.174792 987.502546 0.098 3.2357E-05 -0.32018 -0.00010572 -0.22218 -7.3358E-05 330.17465803552057 31.025 0.80812 28.908 28.573 29.381 -2.1167 -0.003948 -3.3723E-05 NaN 3.9444 78 22 5 NaN NaN NaN NaN 0 NaN NaN 0 64544000 44543 11356 29615 29635 0.008294810348388637 TALQEWQI 8 Unmodified _TALQEWQI_ 0 0 0 ENST00000565368.5_1_16:57474764-57481287:-|nuORF;ENST00000567518.5_1_16:57474764-57481287:-|nuORF ENST00000565368.5_1_16:57474764-57481287:-|nuORF ENST00000565368.5_1_16:57474764-57481287:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 330.174792 987.502546 -0.17114 -5.6507E-05 -0.21336 -7.0446E-05 -0.3845 -0.00012695 330.17470874007216 30.983 1.1232 28.909 28.605 29.728 -2.0743 -0.0031636 7.2085E-05 NaN 3.9444 100 31 5 NaN NaN NaN NaN 0 NaN NaN 0 74737000 44544 11356 29615 29635 0.008294810348388637 TALRCEPD 8 Unmodified _TALRCEPD_ 0 0 0 REV__ENST00000427624.2_1_19:58880485-58892377:-|nuORF REV__ENST00000427624.2_1_19:58880485-58892377:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 302.0461120605469 3 302.144615 903.412016 NaN NaN NaN NaN NaN NaN NaN 35.251 1 32.857 32.357 33.357 -2.3938 0 0 0 0.21486 1 6489 6489 1.6526 0 1 + 44545 21582 29616 29636 43868 43868 -0.04355311285087282 TALSASARK 9 Unmodified _TALSASARK_ 0 0 0 SYNE1|p.F1612L|1|0.25|ENSG00000131018|chr6:152428345-152428345|G/C|missense_variant SYNE1|p.F1612L|1|0.25|ENSG00000131018|chr6:152428345-152428345|G/C|missense_variant SYNE1|p.F1612L|1|0.25|ENSG00000131018|chr6:152428345-152428345|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 452.7652282714844 2 452.764166 903.513779 NaN NaN NaN NaN NaN NaN NaN 151.72 1 151.72 151.22 152.22 0 0 0 0 0.18039 1 30390 30390 0.40827 0 1 44546 25804 29617 29637 43869 43869 0.05816303128983691 TALSPQEAP 9 Unmodified _TALSPQEAP_ 0 0 0 ENSG00000167676|ENST00000301286|PLIN4 ENSG00000167676|ENST00000301286|PLIN4 ENSG00000167676|ENST00000301286|PLIN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2382507324219 2 457.234907 912.455261 -0.095985 -4.3888E-05 -0.00064064 -2.9292E-07 -0.096626 -4.4181E-05 457.23485309025426 82.001 0.58683 78.444 78.136 78.723 -3.557 30 16 3 0 0 0 0.43219 1 16015 16015 25.399 0 1 1369200 44547 5832 29618 29638 43870 43870 -0.004467982361461509 TALSRGPLD 9 Unmodified _TALSRGPLD_ 0 0 0 REV__nc|ENSG00000174332|Q8NBF1|GLIS1 REV__nc|ENSG00000174332|Q8NBF1|GLIS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2559509277344 2 465.256174 928.497795 -0.076635 -3.5655E-05 -0.70715 -0.00032901 -0.78379 -0.00036466 465.25577871493516 49.191 0.83467 46.185 45.765 46.599 -3.0068 72 23 5 0 0 0 0.57447 1 9093 9093 14.838 0 1 14254000 + 44548 18406 29619 29639 43871 43871 0.03068596892092046 TALSSKLIS 9 Unmodified _TALSSKLIS_ 0 0 0 nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7 nc|ENSG00000135624|Q99832-4|CCT7 nc|ENSG00000135624|Q99832-4|CCT7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2278747558594 2 460.276575 918.538597 NaN NaN NaN NaN NaN NaN NaN 30.411 1 30.411 29.911 30.911 0 0 0 0 0.23508 1 5464 5464 6.7232 1.9672 1 44549 3940 29620 29640 43872 43872 0.07606938211711167 TALVGEAAAA 10 Unmodified _TALVGEAAAA_ 0 0 0 REV__ENST00000361832.2_1_10:102045868-102046416:-|nuORF REV__ENST00000361832.2_1_10:102045868-102046416:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23602294921875 2 437.23745 872.460347 0.78218 0.000342 -1.3624 -0.00059568 -0.58019 -0.00025368 437.2368282613484 24.048 0.2823 22.495 22.319 22.602 -1.5532 12 7 2 0 0 0 0.20847 1 4162 4162 43.858 3.901 1 674700 + 44550 19209 29621 29641 43873 43873 0.01901505626449307 TALVKTMR 8 Unmodified _TALVKTMR_ 0 0 0 ENST00000244670.12_1_6:42984979-42985060:+|nuORF ENST00000244670.12_1_6:42984979-42985060:+|nuORF ENST00000244670.12_1_6:42984979-42985060:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2617492675781 2 460.273312 918.532072 NaN NaN NaN NaN NaN NaN NaN 93.353 1 89.362 88.862 89.862 -3.9907 0 0 0 0.23698 1 18283 18283 0.62683 0.50396 1 44551 8200 29622 29642 43874 43874 0.06954721779345618 TALVMRCI 8 Unmodified _TALVMRCI_ 0 0 0 REV__nc|ENSG00000171310|Q9NPF2-2|CHST11 REV__nc|ENSG00000171310|Q9NPF2-2|CHST11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7481994628906 2 453.748616 905.482679 NaN NaN NaN NaN NaN NaN NaN 34.061 1 31.845 31.345 32.345 -2.2158 0 0 0 0.21486 1 5956 5956 5.7604 0.028577 1 + 44552 18219 29623 29643 43875 43875 0.026156904988965834 TALWAWELP 9 Unmodified _TALWAWELP_ 0 0 0 ENST00000507123.1_1_4:8201036-8206947:+|nuORF ENST00000507123.1_1_4:8201036-8206947:+|nuORF ENST00000507123.1_1_4:8201036-8206947:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7844848632812 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 56.454 1 56.454 55.954 56.954 0 0 0 0 0.19679 1 10784 10784 0.12781 0 1 44553 10692 29624 29644 43876 43876 0.01522644448596111 TALWGEEYY 9 Unmodified _TALWGEEYY_ 0 0 0 REV__ENSG00000130338|ENST00000367097|TULP4 REV__ENSG00000130338|ENST00000367097|TULP4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.8604736328125 3 377.837957 1130.49204 NaN NaN NaN NaN NaN NaN NaN 66.452 1 66.452 65.952 66.952 0 0 0 0 0.19661 1 12837 12837 0.073264 0 1 + 44554 15998 29625 29645 43877 43877 -0.0679854641023212 TALWMFNRTY 10 Unmodified _TALWMFNRTY_ 0 0 0 ENTPD6|p.R281W|1|0.41|ENSG00000197586|chr20:25217544-25217544|C/T|missense_variant ENTPD6|p.R281W|1|0.41|ENSG00000197586|chr20:25217544-25217544|C/T|missense_variant ENTPD6|p.R281W|1|0.41|ENSG00000197586|chr20:25217544-25217544|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.8948059082031 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 23.205 1 21.651 21.151 22.151 -1.5532 0 0 0 0.22588 1 3996 3996 3.5871 0 1 44555 11773 29626 29646 43878 43878 -0.016068539630396117 TAMAPRPTGPP 11 Unmodified _TAMAPRPTGPP_ 0 0 0 REV__ENST00000477683.5_1_17:19250580-19265912:-|nuORF REV__ENST00000477683.5_1_17:19250580-19265912:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7899169921875 2 548.284408 1094.55426 0.77455 0.00042467 -0.86705 -0.00047539 -0.092508 -5.0721E-05 548.2840752656637 79.609 0.69787 79.609 79.166 79.864 0 37 19 3 0 0 0 0.96036 1 15418 15418 0.96228 0 1 2314600 + 44556 22123 29627 29647 43879 43879 0.010769014571224034 TAMCVCCPCC 10 Unmodified _TAMCVCCPCC_ 0 0 0 TRIM42|p.N363Kfs*4|1|0.08|ENSG00000155890|chr3:140687764-140687765|-/A|frameshift_variant;nc|ENSG00000155890|Q8IWZ5-2|TRIM42;TRIM42|p.N363Tfs*36|1|0.16|ENSG00000155890|chr3:140687765-140687765|A/-|frameshift_variant;ENSG00000155890|ENST00000286349|TRIM42 TRIM42|p.N363Kfs*4|1|0.08|ENSG00000155890|chr3:140687764-140687765|-/A|frameshift_variant TRIM42|p.N363Kfs*4|1|0.08|ENSG00000155890|chr3:140687764-140687765|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 517.3034057617188 2 517.158747 1032.30294 NaN NaN NaN NaN NaN NaN NaN 8.2288 1 7.5497 7.0497 8.0497 -0.67913 0 0 0 2.8426 1 833 833 0.13989 0.11369 1 44557 5067 29628 29648 43880 43880 -0.21191764158743354 TAMDQVFHV 9 Unmodified _TAMDQVFHV_ 0 0 0 ENSG00000145012|ENST00000617246|LPP ENSG00000145012|ENST00000617246|LPP ENSG00000145012|ENST00000617246|LPP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.696533203125 2 524.250034 1046.48552 -0.38725 -0.00020302 0.71781 0.00037631 0.33056 0.0001733 524.7520308375928 129.11 0.56148 124.3 123.98 124.54 -4.817 24 15 2 0 0 0 0.60663 1 24822 24822 32.786 11.039 1 1983100 44558 4588 29629 29649 43881 43881 -0.03586762842610369 TAMDQVFHV 9 Unmodified _TAMDQVFHV_ 0 0 0 ENSG00000145012|ENST00000617246|LPP ENSG00000145012|ENST00000617246|LPP ENSG00000145012|ENST00000617246|LPP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 524.250034 1046.48552 -0.12254 -6.4241E-05 -0.30275 -0.00015872 -0.42529 -0.00022296 524.2500714142558 129.04 0.65547 124.41 124.05 124.7 -4.6292 0.056887 -0.00065081 NaN 32.786 31 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1348500 44559 4588 29629 29649 -0.03586762842610369 TAMHMHIL 8 Unmodified _TAMHMHIL_ 0 0 0 REV__ENST00000427832.2_1_1:111923053-111923173:+|nuORF REV__ENST00000427832.2_1_1:111923053-111923173:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7428894042969 2 477.238415 952.462278 -0.025579 -1.2207E-05 0.98667 0.00047088 0.96109 0.00045867 477.23882363121993 52.23 0.53203 52.23 51.898 52.43 0 35 14 4 0 0 0 0.70613 2 9913 9913;9943 13.508 1.4373 1 17216000 + 44560 21585 29630 29650 43882;43883 43882 -0.015854801609179958 TAMHMHIL 8 Unmodified _TAMHMHIL_ 0 0 0 REV__ENST00000427832.2_1_1:111923053-111923173:+|nuORF REV__ENST00000427832.2_1_1:111923053-111923173:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.238415 952.462278 -0.21985 -0.00010492 1.4242 0.00067968 1.2043 0.00057476 477.2390585639748 54.817 0.50741 51.933 51.635 52.142 -2.8837 -0.010015 0.00022905 NaN 13.508 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 20424000 + 44561 21585 29630 29650 -0.015854801609179958 TAMHMHIL 8 Unmodified _TAMHMHIL_ 0 0 0 REV__ENST00000427832.2_1_1:111923053-111923173:+|nuORF REV__ENST00000427832.2_1_1:111923053-111923173:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.238415 952.462278 0.040397 1.9279E-05 1.0864 0.00051846 1.1268 0.00053774 477.2388496226896 54.869 0.59743 51.734 51.535 52.133 -3.1352 -0.20932 -9.3386E-05 NaN 13.508 33 16 3 NaN NaN NaN NaN 0 NaN NaN 0 23901000 + 44562 21585 29630 29650 -0.015854801609179958 TAMHMHIL 8 Unmodified _TAMHMHIL_ 0 0 0 REV__ENST00000427832.2_1_1:111923053-111923173:+|nuORF REV__ENST00000427832.2_1_1:111923053-111923173:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.238415 952.462278 -0.016846 -8.0394E-06 1.2402 0.00059185 1.2233 0.00058382 477.238937175263 55.014 0.6272 51.876 51.519 52.146 -3.1377 -0.067032 5.3395E-05 NaN 13.508 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 15084000 + 44563 21585 29630 29650 -0.015854801609179958 TAMITSPI 8 Unmodified _TAMITSPI_ 0 0 0 REV__ENSG00000173705|ENST00000309558|SUSD5 REV__ENSG00000173705|ENST00000309558|SUSD5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 417.2232666015625 2 417.225497 832.43644 NaN NaN NaN NaN NaN NaN NaN 64.328 1 61.331 60.831 61.831 -2.9975 0 0 0 0.21323 1 12441 12441 14.582 1.0738 1 + 44564 18369 29631 29651 43884 43884 0.013519488684551106 TAMKKVFRV 9 Unmodified _TAMKKVFRV_ 0 0 0 ENSG00000132781|ENST00000456914|MUTYH;nc|ENSG00000132781|Q9UIF7-5|MUTYH;nc|ENSG00000132781|Q9UIF7-4|MUTYH;nc|ENSG00000132781|Q9UIF7-3|MUTYH;nc|ENSG00000132781|Q9UIF7-2|MUTYH;nc|ENSG00000132781|Q9UIF7|MUTYH;ENST00000467459.5_1_1:45794980-45797699:-|nuORF;ENST00000482094.5_1_1:45794980-45797552:-|nuORF ENSG00000132781|ENST00000456914|MUTYH ENSG00000132781|ENST00000456914|MUTYH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2041320800781 3 360.551317 1078.63212 NaN NaN NaN NaN NaN NaN NaN 45.557 1 42.691 42.191 43.191 -2.8653 0 0 0 0.19636 1 8268 8268 2.4985 0.59211 1 44565 3763 29632 29652 43885 43885 0.0959495911315571 TAMNPVSD 8 Unmodified _TAMNPVSD_ 0 0 0 REV__ENSG00000135976|ENST00000420699|ANKRD36 REV__ENSG00000135976|ENST00000420699|ANKRD36 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 417.2225646972656 2 417.686736 833.358918 -0.2528 -0.00010559 1.1057 0.00046184 0.85291 0.00035625 417.68717682095087 62.677 0.63255 62.677 62.277 62.909 0 25 17 2 0 0 0 1.0254 1 12034 12034 2.3027 0 1 2170400 + 44566 16305 29633 29653 43886 43886 -0.06442689067728224 TAMSVTRY 8 Unmodified _TAMSVTRY_ 0 0 0 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2417297363281 2 464.731477 927.448402 0.0028502 1.3246E-06 -2.3679 -0.0011005 -2.3651 -0.0010991 464.7303760881641 63.009 0.48097 60.011 59.671 60.151 -2.9975 18 13 2 0 0 0 0.71273 1 12109 12109 12.532 0.89125 1 992840 44567 6801 29634 29654 43887 43887 -0.018224343883503025 TANAGGND 8 Unmodified _TANAGGND_ 0 0 0 LINGO1|p.A499T|1|0.39|ENSG00000169783|chr15:77614412-77614412|C/T|missense_variant LINGO1|p.A499T|1|0.39|ENSG00000169783|chr15:77614412-77614412|C/T|missense_variant LINGO1|p.A499T|1|0.39|ENSG00000169783|chr15:77614412-77614412|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.21356201171875 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 43.714 1 40.948 40.448 41.448 -2.7661 0 0 0 0.21486 1 7897 7897 2.5775 0 1 44568 12078 29635 29655 43888 43888 -0.08221646061053889 TANFYPLRP 9 Unmodified _TANFYPLRP_ 0 0 0 REV__ENST00000425916.4_1_10:77167483-77167783:+|nuORF REV__ENST00000425916.4_1_10:77167483-77167783:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013244628906 3 360.194186 1077.56073 NaN NaN NaN NaN NaN NaN NaN 43.883 1 43.883 43.383 44.383 0 0 0 0 0.23508 1 8222 8222 4.5289 1.5336 1 + 44569 21561 29636 29656 43889 43889 0.02505162680131434 TANQGSEATY 10 Unmodified _TANQGSEATY_ 0 0 0 nc|ENSG00000232869|A0A5B7|TRBV29-1 nc|ENSG00000232869|A0A5B7|TRBV29-1 nc|ENSG00000232869|A0A5B7|TRBV29-1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2640991210938 2 521.22781 1040.44107 0.62877 0.00032773 -0.59142 -0.00030826 0.037356 1.9471E-05 521.2272733572082 102.02 0.70343 102.02 101.71 102.41 0 39 19 3 0 0 0 0.71778 1 20007 20007 9.3831 1.473 1 3943600 44570 12609 29637 29657 43890 43890 -0.07753495455085613 TAPARRPPP 9 Unmodified _TAPARRPPP_ 0 0 0 REV__ENST00000326237.3_1_3:10044409-10044886:+|nuORF REV__ENST00000326237.3_1_3:10044409-10044886:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7790832519531 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 42.203 1 39.484 38.984 39.984 -2.7191 0 0 0 0.19656 1 7889 7889 0.40827 0 1 + 44571 20579 29638 29658 43891 43891 0.06343715602793054 TAPDGRPPG 9 Unmodified _TAPDGRPPG_ 0 0 0 ENST00000381486.6_1_2:11780435-11780513:+|nuORF ENST00000381486.6_1_2:11780435-11780513:+|nuORF ENST00000381486.6_1_2:11780435-11780513:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 433.8995666503906 2 434.219591 866.42463 -0.89486 -0.00038857 0.41351 0.00017956 -0.48135 -0.00020901 434.21975821856756 21.817 0.86314 20.096 19.427 20.29 -1.7211 33 24 2 0 0 0 0.87974 1 3423 3423 0.45834 0.45834 1 306170 44572 9331 29639 29659 43892 43892 -0.013925318305268775 TAPDGRPPG 9 Unmodified _TAPDGRPPG_ 0 0 0 ENST00000381486.6_1_2:11780435-11780513:+|nuORF ENST00000381486.6_1_2:11780435-11780513:+|nuORF ENST00000381486.6_1_2:11780435-11780513:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 434.219591 866.42463 0.29811 0.00012944 -0.57514 -0.00024974 -0.27704 -0.00012029 434.2192502259811 21.254 0.34888 19.78 19.597 19.946 -1.4742 -0.15783 -0.00061892 NaN 0.45834 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 297650 44573 9331 29639 29659 -0.013925318305268775 TAPFFLHF 8 Unmodified _TAPFFLHF_ 0 0 0 ENSG00000213903|ENST00000345363|LTB4R ENSG00000213903|ENST00000345363|LTB4R ENSG00000213903|ENST00000345363|LTB4R MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2735290527344 2 490.255446 978.496338 NaN NaN NaN NaN NaN NaN NaN 17.419 1 16.147 15.647 16.647 -1.2722 0 0 0 0.21486 1 2564 2564 10.183 0.83596 1 44574 7706 29640 29660 43893 43893 0.006230075939924973 TAPHFPVVVK 10 Unmodified _TAPHFPVVVK_ 0 0 0 ENSG00000185666|ENST00000358763|SYN3 ENSG00000185666|ENST00000358763|SYN3 ENSG00000185666|ENST00000358763|SYN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7785034179688 2 547.821484 1093.62842 -1.5321 -0.00083931 -0.79653 -0.00043635 -2.3286 -0.0012757 547.8208501297484 15 0.16896 13.789 13.683 13.852 -1.2106 6 4 2 0 0 0 0.75676 1 2020 2020 3.5965 1.5367 1 206480 44575 7007 29641 29661 43894 43894 0.08534612610947079 TAPHLLFY 8 Unmodified _TAPHLLFY_ 0 0 0 REV__ENST00000411846.6_1_1:108815923-108880006:+|nuORF REV__ENST00000411846.6_1_1:108815923-108880006:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2547912597656 2 481.260728 960.506903 0.21499 0.00010346 -3.0752 -0.00148 -2.8602 -0.0013765 481.2587630495795 42.316 0.17322 42.316 42.249 42.422 0 6 4 2 0 0 0 0.72861 1 7914 7914 10.183 1.5901 1 189930 + 44576 21428 29642 29662 43895 43895 0.025069902484233353 TAPHQSGN 8 Unmodified _TAPHQSGN_ 0 0 0 REV__ENSG00000184454|ENST00000374392|NCMAP REV__ENSG00000184454|ENST00000374392|NCMAP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 406.1883544921875 2 406.188291 810.36203 NaN NaN NaN NaN NaN NaN NaN 53.307 1 50.22 49.72 50.72 -3.0876 0 0 0 0.21039 1 9812 9812 16.942 9.0321 1 + 44577 18899 29643 29663 43896 43896 -0.050736778987015896 TAPHRIQGW 9 Unmodified _TAPHRIQGW_ 0 0 0 REV__UROC1|p.K307Rfs*77|1|0.35|ENSG00000159650|chr3:126501263-126501263|T/-|frameshift_variant REV__UROC1|p.K307Rfs*77|1|0.35|ENSG00000159650|chr3:126501263-126501263|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.282958984375 2 533.283057 1064.55156 NaN NaN NaN NaN NaN NaN NaN 113.97 1 109.51 109.01 110.01 -4.4566 0 0 0 0.23508 1 22456 22456 12.532 0 1 + 44578 25521 29644 29664 43897 43897 0.021868141144750552 TAPHSHRD 8 Unmodified _TAPHSHRD_ 0 0 0 ENSG00000140471|ENST00000314742|LINS1;ENST00000559169.1_1_15:101109445-101112292:-|nuORF ENSG00000140471|ENST00000314742|LINS1 ENSG00000140471|ENST00000314742|LINS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2344665527344 2 460.72029 919.426027 NaN NaN NaN NaN NaN NaN NaN 51.789 1 51.789 51.289 52.289 0 0 0 0 0.21171 1 9834 9834 15.847 0 1 44579 4303 29645 29665 43898 43898 -0.036908977417624556 TAPIPKRA 8 Unmodified _TAPIPKRA_ 0 0 0 REV__ENSG00000185823|ENST00000329468|NPAP1 REV__ENSG00000185823|ENST00000329468|NPAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 427.2645568847656 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 23.28 1 23.28 22.78 23.78 0 0 0 0 0.21486 1 3967 3967 2.5775 0 1 + 44580 18989 29646 29666 43899 43899 0.08597812342554789 TAPKENLT 8 Unmodified _TAPKENLT_ 0 0 0 nc|ENSG00000170954|Q09FC8-4|ZNF415;nc|ENSG00000170954|Q09FC8-6|ZNF415;ENSG00000170954|ENST00000243643|ZNF415;nc|ENSG00000170954|Q09FC8-2|ZNF415;nc|ENSG00000170954|Q09FC8|ZNF415 nc|ENSG00000170954|Q09FC8-4|ZNF415 nc|ENSG00000170954|Q09FC8-4|ZNF415 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2252197265625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 23.83 1 23.83 23.33 24.33 0 0 0 0 0.21486 1 4081 4081 8.5933 0 1 44581 6116 29647 29667 43900 43900 0.019015056264720442 TAPKMPEFILY 11 Unmodified _TAPKMPEFILY_ 0 0 0 EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000585906.5_1_18:43437816-43497657:-|nuORF EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21685791015625 3 437.233542 1308.6788 NaN NaN NaN NaN NaN NaN NaN 50.156 1 47.15 46.65 47.65 -3.0068 0 0 0 0.23562 1 9212 9212 3.8459 0.52627 1 44582 4910 29648 29668 43901 43901 0.03680354153789267 TAPLKKGI 8 Unmodified _TAPLKKGI_ 0 0 0 REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1 REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.269287109375 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 29.923 1 27.806 27.306 28.306 -2.1167 0 0 0 0.21486 1 5389 5389 5.2307 0 1 + 44583 16914 29649 29669 43902 43902 0.10743580628081872 TAPLRAMF 8 Unmodified _TAPLRAMF_ 0 0 0 nc|ENSG00000163357|Q5T197-2|DCST1;nc|ENSG00000163357|Q5T197-3|DCST1;ENSG00000163357|ENST00000295542|DCST1 nc|ENSG00000163357|Q5T197-2|DCST1 nc|ENSG00000163357|Q5T197-2|DCST1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75885009765625 2 453.746931 905.479308 NaN NaN NaN NaN NaN NaN NaN 90.873 1 87.095 86.595 87.595 -3.7779 0 0 0 0.21486 1 17392 17392 5.7604 0 1 44584 5420 29650 29670 43903 43903 0.022787637165379238 TAPPGRAS 8 Unmodified _TAPPGRAS_ 0 0 0 REV__ENSG00000114853|ENST00000232974|ZBTB47 REV__ENSG00000114853|ENST00000232974|ZBTB47 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.2239685058594 2 378.703577 755.392602 0.53682 0.0002033 -0.7715 -0.00029217 -0.23468 -8.8872E-05 378.7032011971305 23.213 0.46158 21.66 21.407 21.868 -1.5532 23 12 3 0 0 0 0.89687 1 4011 4011 3.5871 3.4642 1 1182600 + 44585 15391 29651 29671 43904 43904 0.005121004863212875 TAPPGRAS 8 Unmodified _TAPPGRAS_ 0 0 0 REV__ENSG00000114853|ENST00000232974|ZBTB47 REV__ENSG00000114853|ENST00000232974|ZBTB47 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 378.703577 755.392602 -0.14445 -5.4703E-05 -0.0089993 -3.408E-06 -0.15345 -5.8111E-05 378.7036276890352 21.856 0.45011 21.856 21.602 22.052 0 0.0981 0.00026965 NaN 3.5871 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2073800 + 44586 15391 29651 29671 0.005121004863212875 TAPPLGPP 8 Unmodified _TAPPLGPP_ 0 0 0 REV__PEAR1|p.G1005Afs*57|3|0.33|ENSG00000187800|chr1:156914691-156914691|C/-|frameshift_variant REV__PEAR1|p.G1005Afs*57|3|0.33|ENSG00000187800|chr1:156914691-156914691|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2187194824219 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 51.582 1 48.7 48.2 49.2 -2.8824 0 0 0 0.21486 1 9802 9802 5.7604 0 1 + 44587 24453 29652 29672 43905 43905 0.02767056777236121 TAPPQPLAAP 10 Unmodified _TAPPQPLAAP_ 0 0 0 REV__ENSG00000167513|ENST00000301019|CDT1 REV__ENSG00000167513|ENST00000301019|CDT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7686462402344 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 16.485 1 15.263 14.763 15.763 -1.2219 0 0 0 0.22588 1 2373 2373 3.9444 0 1 + 44588 17932 29653 29673 43906 43906 0.04098071414500737 TAPRMLAN 8 Unmodified _TAPRMLAN_ 0 0 0 REV__HGFAC|p.R190Gfs*57|1|0.54|ENSG00000109758|chr4:3444127-3444127|C/-|frameshift_variant REV__HGFAC|p.R190Gfs*57|1|0.54|ENSG00000109758|chr4:3444127-3444127|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2360534667969 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 68.165 1 64.775 64.275 65.275 -3.3903 0 0 0 0.21039 1 12863 12863 16.942 1.0951 1 + 44589 23631 29654 29674 43907 43907 0.012492891941064954 TAPRMLAN 8 Unmodified _TAPRMLAN_ 0 0 0 REV__HGFAC|p.R190Gfs*57|1|0.54|ENSG00000109758|chr4:3444127-3444127|C/-|frameshift_variant REV__HGFAC|p.R190Gfs*57|1|0.54|ENSG00000109758|chr4:3444127-3444127|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2359313964844 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 68.407 1 65.017 64.517 65.517 -3.3903 0 0 0 0.21486 1 12912 12912 11.64 0.81637 1 + 44590 23631 29654 29674 43908 43908 0.012492891941064954 TAPSDLRF 8 Unmodified _TAPSDLRF_ 0 0 0 REV__ENSG00000158125|ENST00000379416|XDH REV__ENSG00000158125|ENST00000379416|XDH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.750732421875 2 453.737617 905.460681 NaN NaN NaN NaN NaN NaN NaN 50.992 1 47.946 47.446 48.446 -3.0453 0 0 0 0.21452 1 9352 9352 13.508 1.8676 1 + 44591 17325 29655 29675 43909 43909 0.004169253463260247 TAPSTNLCL 9 Unmodified _TAPSTNLCL_ 0 0 0 nc|ENSG00000148735|Q5SXH7|PLEKHS1 nc|ENSG00000148735|Q5SXH7|PLEKHS1 nc|ENSG00000148735|Q5SXH7|PLEKHS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23040771484375 2 460.23131 918.448068 -0.099178 -4.5645E-05 -0.048251 -2.2207E-05 -0.14743 -6.7851E-05 460.23131516641246 45.784 0.52029 42.944 42.548 43.068 -2.8409 20 14 2 0 0 0 0.60805 1 8570 8570 12.532 0 1 1391100 44592 12379 29656 29676 43910 43910 -0.014418541082250158 TAPSYYAPS 9 Unmodified _TAPSYYAPS_ 0 0 0 REV__nc|ENSG00000171056|Q9BT81-2|SOX7 REV__nc|ENSG00000171056|Q9BT81-2|SOX7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72113037109375 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 22.552 1 21.02 20.52 21.52 -1.5323 0 0 0 0.23508 1 3858 3858 7.9102 0 1 + 44593 24163 29657 29677 43911 43911 -0.050784871274800025 TAPTGFVFGPS 11 Unmodified _TAPTGFVFGPS_ 0 0 0 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.276611328125 2 540.771657 1079.52876 0.017982 9.7241E-06 -2.2514 -0.0012175 -2.2334 -0.0012078 540.7699140416374 44.011 0.38434 41.264 41.011 41.395 -2.7475 19 10 3 0 0 0 0.43589 1 7953 7953 41.956 10.687 1 478560 44594 7684 29658 29678 43912 43912 -0.007822497936558648 TAQAETTMH 9 Unmodified _TAQAETTMH_ 0 0 0 REV__ENSG00000125999|ENST00000253354|BPIFB1 REV__ENSG00000125999|ENST00000253354|BPIFB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.0318603515625 3 330.483408 988.428395 0.020411 6.7454E-06 0.34728 0.00011477 0.36769 0.00012151 330.483472991983 48.517 1.6801 45.518 44.767 46.447 -2.999 90 47 3 0 0 0 0.8825 1 8804 8804 0.23584 0 1 1935000 + 44595 15847 29659 29679 43913 43913 -0.06628230118974443 TAQAETTMH 9 Unmodified _TAQAETTMH_ 0 0 0 REV__ENSG00000125999|ENST00000253354|BPIFB1 REV__ENSG00000125999|ENST00000253354|BPIFB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 330.483408 988.428395 -0.12048 -3.9816E-05 0.90396 0.00029874 0.78348 0.00025893 330.4836626560904 45.72 0.6653 45.72 45.233 45.898 0 0.13007 7.0065E-05 NaN 0.23584 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 817100 + 44596 15847 29659 29679 -0.06628230118974443 TAQAETTMH 9 Unmodified _TAQAETTMH_ 0 0 0 REV__ENSG00000125999|ENST00000253354|BPIFB1 REV__ENSG00000125999|ENST00000253354|BPIFB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 330.483408 988.428395 -0.36308 -0.00011999 0.75282 0.0002488 0.38975 0.0001288 330.4836067064223 48.519 1.409 45.65 44.91 46.319 -2.869 0.05987 -7.9774E-05 NaN 0.23584 62 39 2 NaN NaN NaN NaN 0 NaN NaN 0 1661600 + 44597 15847 29659 29679 -0.06628230118974443 TAQAPHPPP 9 Unmodified _TAQAPHPPP_ 0 0 0 REV__ENST00000446176.6_1_9:132652446-132652740:-|nuORF REV__ENST00000446176.6_1_9:132652446-132652740:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2376403808594 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 53.691 1 53.691 53.191 54.191 0 0 0 0 0.23508 1 10230 10230 8.5933 0.68312 1 + 44598 21757 29660 29680 43914 43914 0.00036345066178000707 TAQAPHPPP 9 Unmodified _TAQAPHPPP_ 0 0 0 REV__ENST00000446176.6_1_9:132652446-132652740:-|nuORF REV__ENST00000446176.6_1_9:132652446-132652740:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2388000488281 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 56.953 1 54.059 53.559 54.559 -2.8944 0 0 0 0.23508 1 10925 10925 8.5933 0.68312 1 + 44599 21757 29660 29680 43915 43915 0.00036345066178000707 TAQFSSALQL 10 Unmodified _TAQFSSALQL_ 0 0 0 REV__ENSG00000121270|ENST00000356608|ABCC11 REV__ENSG00000121270|ENST00000356608|ABCC11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2826538085938 2 533.282389 1064.55022 0.53429 0.00028493 -0.75392 -0.00040205 -0.21964 -0.00011713 533.2819794295052 97.731 2.3489 93.496 92.231 94.58 -4.2348 212 67 4 0 0 0 0.70357 1 18819 18819 10.824 1.4408 1 69160000 + 44600 15648 29661 29681 43916 43916 0.020531352350417365 TAQHGKRH 8 Unmodified _TAQHGKRH_ 0 0 0 ENST00000302079.10_2_18:10871411-10979568:-|nuORF ENST00000302079.10_2_18:10871411-10979568:-|nuORF ENST00000302079.10_2_18:10871411-10979568:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.1387023925781 3 312.170375 933.489296 NaN NaN NaN NaN NaN NaN NaN 91.344 1 87.419 86.919 87.919 -3.9251 0 0 0 0.21486 1 17881 17881 1.6526 0 1 44601 8569 29662 29682 43917 43917 0.01989087766139619 TAQHGKRH 8 Unmodified _TAQHGKRH_ 0 0 0 ENST00000302079.10_2_18:10871411-10979568:-|nuORF ENST00000302079.10_2_18:10871411-10979568:-|nuORF ENST00000302079.10_2_18:10871411-10979568:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 312.1453552246094 3 312.170375 933.489296 NaN NaN NaN NaN NaN NaN NaN 107.11 1 102.7 102.2 103.2 -4.4121 0 0 0 0.21486 1 20548 20548 0.45834 0 1 44602 8569 29662 29682 43918 43918 0.01989087766139619 TAQHLKKGLTY 11 Unmodified _TAQHLKKGLTY_ 0 0 0 REV__SLC47A1|p.I235T|1|0.12|ENSG00000142494|chr17:19555655-19555655|T/C|missense_variant REV__SLC47A1|p.I235T|1|0.12|ENSG00000142494|chr17:19555655-19555655|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.757080078125 2 630.358962 1258.70337 NaN NaN NaN NaN NaN NaN NaN 47.322 1 44.38 43.88 44.88 -2.9421 0 0 0 0.23379 1 8624 8624 5.2969 0.39987 1 + 44603 24647 29663 29683 43919 43919 0.08436750351506817 TAQHRILK 8 Unmodified _TAQHRILK_ 0 0 0 REV__ENSG00000167384|ENST00000592529|ZNF180 REV__ENSG00000167384|ENST00000592529|ZNF180 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.9050598144531 3 322.866293 965.577048 NaN NaN NaN NaN NaN NaN NaN 16.707 1 16.707 16.207 17.207 0 0 0 0 0.21486 1 2608 2608 1.6526 0 1 + 44604 17922 29664 29684 43920 43920 0.09288288636901143 TAQPGQLAPP 10 Unmodified _TAQPGQLAPP_ 0 0 0 ENSG00000143001|ENST00000371268|TMEM61 ENSG00000143001|ENST00000371268|TMEM61 ENSG00000143001|ENST00000371268|TMEM61 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2645263671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 60.983 1 57.76 57.26 58.26 -3.2237 0 0 0 2.8426 1 11411 11411 0.063865 0 1 44605 4450 29665 29685 43921 43921 0.023328834091216777 TAQRCINE 8 Unmodified _TAQRCINE_ 0 0 0 REV__CNTD1|p.A88T|1|0.38|ENSG00000176563|chr17:42804241-42804241|G/A|missense_variant REV__CNTD1|p.A88T|1|0.38|ENSG00000176563|chr17:42804241-42804241|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.15185546875 3 312.151881 933.433814 NaN NaN NaN NaN NaN NaN NaN 51.218 1 48.167 47.667 48.667 -3.0517 0 0 0 0.21486 1 9433 9433 1.6526 0 1 + 44606 13465 29666 29686 43922 43922 -0.035565065365062765 TAQRLRPFY 9 Unmodified _TAQRLRPFY_ 0 0 0 ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000512908.2_1_5:70398727-70422449:-|nuORF ENST00000315147.8_1_5:70265933-70281744:-|nuORF ENST00000315147.8_1_5:70265933-70281744:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3216552734375 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 68.829 1 65.439 64.939 65.939 -3.3903 0 0 0 0.19632 1 13005 13005 0.40827 0.28045 1 44607 7896 29667 29687 43923 43923 0.05543942837107352 TAQYDLEKA 9 Unmodified _TAQYDLEKA_ 0 0 0 REV__nc|ENSG00000127603|O94854|MACF1 REV__nc|ENSG00000127603|O94854|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 347.1963806152344 3 346.84159 1037.50294 0.088408 3.0664E-05 0.47044 0.00016317 0.55885 0.00019383 346.84177141881725 59.738 0.73363 56.424 56.031 56.764 -3.3139 27 20 2 0 0 0 0.73814 1 11121 11121 4.5289 0 1 717820 + 44608 24029 29668 29688 43924 43924 -0.014311440359506378 TAQYDLEKA 9 Unmodified _TAQYDLEKA_ 0 0 0 REV__nc|ENSG00000127603|O94854|MACF1 REV__nc|ENSG00000127603|O94854|MACF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 346.84159 1037.50294 -0.51274 -0.00017784 1.182 0.00040998 0.6693 0.00023214 346.8419838458603 56.464 0.73083 56.464 56.151 56.882 0 -0.0094527 0.00036259 NaN 4.5289 41 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1619900 + 44609 24029 29668 29688 -0.014311440359506378 TAQYDLEKA 9 Unmodified _TAQYDLEKA_ 0 0 0 REV__nc|ENSG00000127603|O94854|MACF1 REV__nc|ENSG00000127603|O94854|MACF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 346.84159 1037.50294 -0.31932 -0.00011075 0.6823 0.00023665 0.36298 0.0001259 346.84190203728275 59.49 0.55932 56.556 56.226 56.785 -2.9333 0.082897 -0.00015741 NaN 4.5289 24 15 3 NaN NaN NaN NaN 0 NaN NaN 0 771540 + 44610 24029 29668 29688 -0.014311440359506378 TAQYDLEKA 9 Unmodified _TAQYDLEKA_ 0 0 0 REV__nc|ENSG00000127603|O94854|MACF1 REV__nc|ENSG00000127603|O94854|MACF1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 346.84159 1037.50294 0.088408 3.0664E-05 0.47044 0.00016317 0.55885 0.00019383 346.84177141881725 59.738 0.73363 56.424 56.031 56.764 -3.3139 -0.049586 -0.00037785 NaN 4.5289 27 20 2 NaN NaN NaN NaN 0 NaN NaN 0 717820 + 44611 24029 29668 29688 -0.014311440359506378 TAQYDLEKA 9 Unmodified _TAQYDLEKA_ 0 0 0 REV__nc|ENSG00000127603|O94854|MACF1 REV__nc|ENSG00000127603|O94854|MACF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 346.84159 1037.50294 -0.5581 -0.00019357 1.0459 0.00036277 0.48782 0.0001692 346.8419856195628 59.673 0.5918 56.45 56.082 56.674 -3.2237 -0.023858 0.00022095 NaN 4.5289 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 629490 + 44612 24029 29668 29688 -0.014311440359506378 TARCHPGTG 9 Unmodified _TARCHPGTG_ 0 0 0 nc|ENSG00000087303|Q14112-2|NID2;NID2|p.K1297Nfs*26|1|0.42|ENSG00000087303|chr14:52006650-52006650|T/-|frameshift_variant;ENSG00000087303|ENST00000216286|NID2;ENST00000554284.1_1_14:52495365-52507549:-|nuORF nc|ENSG00000087303|Q14112-2|NID2 nc|ENSG00000087303|Q14112-2|NID2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 450.1542663574219 2 450.211244 898.407934 NaN NaN NaN NaN NaN NaN NaN 63.344 1 63.344 62.844 63.844 0 0 0 0 0.23508 1 12179 12179 7.2892 0.93513 1 44613 1717 29669 29689 43925 43925 -0.04533355988121457 TARCYTER 8 Unmodified _TARCYTER_ 0 0 0 ENSG00000110852|ENST00000228438|CLEC2B ENSG00000110852|ENST00000228438|CLEC2B ENSG00000110852|ENST00000228438|CLEC2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 334.0346374511719 3 333.827398 998.460364 0.28988 9.6768E-05 -1.1123 -0.00037133 -0.82246 -0.00027456 333.8270199389184 28.622 0.24523 26.867 26.7 26.946 -1.7552 8 6 2 0 0 0 1.0277 1 4820 4820 0 0 1 176300 44614 2593 29670 29690 43926 43926 -0.038928176451804575 TARDEESL 8 Unmodified _TARDEESL_ 0 0 0 REV__ENSG00000099821|ENST00000588649|POLRMT REV__ENSG00000099821|ENST00000588649|POLRMT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23284912109375 2 460.719621 919.42469 -0.062937 -2.8996E-05 -1.2002 -0.00055296 -1.2631 -0.00058195 460.719032925011 101.21 0.73919 97.05 96.732 97.471 -4.1594 45 20 3 0 0 0 0.78482 1 19888 19888 25.399 8.457 1 6684000 + 44615 14643 29671 29691 43927 43927 -0.03824576621173037 TARDLLVQY 9 Unmodified _TARDLLVQY_ 0 0 0 ENST00000513089.5_1_4:76886972-76894529:-|nuORF;SDAD1|p.K275Rfs*15|1|0.22|ENSG00000198301|chr4:75970368-75970368|T/-|frameshift_variant;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF;ENSG00000198301|ENST00000356260|SDAD1 ENST00000513089.5_1_4:76886972-76894529:-|nuORF ENST00000513089.5_1_4:76886972-76894529:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 94.039 1 94.039 93.539 94.539 0 0 0 0 0.23508 1 18411 18411 2.7352 0 1 44616 7443 29672 29692 43928 43928 0.0461712798901317 TAREFLVSEK 10 Unmodified _TAREFLVSEK_ 0 0 0 nc|ENSG00000164509|Q8NI17-6|IL31RA;nc|ENSG00000164509|Q8NI17|IL31RA;nc|ENSG00000164509|Q8NI17-12|IL31RA;ENSG00000164509|ENST00000652347|IL31RA nc|ENSG00000164509|Q8NI17-6|IL31RA nc|ENSG00000164509|Q8NI17-6|IL31RA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2485961914062 2 590.322045 1178.62954 0.18812 0.00011105 0.24339 0.00014368 0.43151 0.00025473 590.8235670208289 105.5 0.56085 101.23 100.99 101.55 -4.2638 31 15 3 0 0 0 0.68961 1 20806 20806 12.241 0.74595 1 1795300 44617 5550 29673 29693 43929 43929 0.04736782189183941 TAREFLVSEK 10 Unmodified _TAREFLVSEK_ 0 0 0 nc|ENSG00000164509|Q8NI17-6|IL31RA;nc|ENSG00000164509|Q8NI17|IL31RA;nc|ENSG00000164509|Q8NI17-12|IL31RA;ENSG00000164509|ENST00000652347|IL31RA nc|ENSG00000164509|Q8NI17-6|IL31RA nc|ENSG00000164509|Q8NI17-6|IL31RA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2493896484375 2 590.322045 1178.62954 0.48835 0.00028828 -0.25645 -0.00015139 0.2319 0.0001369 590.3218845691003 105.86 0.56648 101.48 101.08 101.65 -4.3764 23 15 2 0 0 0 0.9068 1 20289 20289 12.241 10.396 1 2163800 44618 5550 29673 29693 43930 43930 0.04736782189183941 TAREKRAF 8 Unmodified _TAREKRAF_ 0 0 0 RPL3L|p.Q383R|1|0.14|ENSG00000140986|chr16:1945518-1945518|T/C|missense_variant RPL3L|p.Q383R|1|0.14|ENSG00000140986|chr16:1945518-1945518|T/C|missense_variant RPL3L|p.Q383R|1|0.14|ENSG00000140986|chr16:1945518-1945518|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2671203613281 2 489.777608 977.540663 0.0083456 4.0875E-06 -0.29798 -0.00014594 -0.28963 -0.00014185 489.77742404068914 17.958 1.771 16.647 16.307 18.078 -1.3109 139 50 5 0 0 0 8448 1 3085 3085 0.68139 0 1 13658000 44619 25622 29674 29694 43931 43931 0.05099411740184223 TARELNLP 8 Unmodified _TARELNLP_ 0 0 0 REV__ENST00000480136.1_1_1:171303670-171311201:+|nuORF REV__ENST00000480136.1_1_1:171303670-171311201:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22357177734375 2 457.258717 912.50288 0.71842 0.0003285 -0.72132 -0.00032983 -0.0028999 -1.326E-06 457.2584451693532 79.394 0.51816 79.394 79.097 79.616 0 38 14 3 0 0 0 0.68827 1 15474 15474 20.454 0 1 1679600 + 44620 14348 29675 29695 43932 43932 0.04312900754700877 TARELNLP 8 Unmodified _TARELNLP_ 0 0 0 REV__ENST00000480136.1_1_1:171303670-171311201:+|nuORF REV__ENST00000480136.1_1_1:171303670-171311201:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 457.258717 912.50288 0.71842 0.0003285 -0.72132 -0.00032983 -0.0028999 -1.326E-06 457.2584451693532 79.394 0.51816 79.394 79.097 79.616 0 0 0 NaN 20.454 38 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1679600 + 44621 14348 29675 29695 0.04312900754700877 TARHFQER 8 Unmodified _TARHFQER_ 0 0 0 ENST00000497456.1_1_7:100210444-100211397:+|nuORF ENST00000497456.1_1_7:100210444-100211397:+|nuORF ENST00000497456.1_1_7:100210444-100211397:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2609252929688 2 522.770314 1043.52608 -0.60224 -0.00031483 1.1095 0.00058003 0.5073 0.0002652 522.7699099627116 24.872 1.072 23.338 22.955 24.027 -1.5342 57 30 3 0 0 0 0.81042 1 4161 4161 11.64 0.81637 1 1950600 44622 10590 29676 29696 43933 43933 0.006053395920389448 TARHQIIVQ 9 Unmodified _TARHQIIVQ_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2774658203125 2 533.311815 1064.60908 NaN NaN NaN NaN NaN NaN NaN 120.11 1 120.11 119.61 120.61 0 0 0 0 0.19652 1 23673 23673 0.073264 0.043981 1 44623 6779 29677 29697 43934 43934 0.07935656320046292 TARIQATS 8 Unmodified _TARIQATS_ 0 0 0 ENSG00000140443|ENST00000650285|IGF1R ENSG00000140443|ENST00000650285|IGF1R ENSG00000140443|ENST00000650285|IGF1R MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 424.2340087890625 2 424.235242 846.45593 NaN NaN NaN NaN NaN NaN NaN 65.822 1 65.822 65.322 66.322 0 0 0 0 0.23782 1 12700 12700 0.12286 0 1 44624 4299 29678 29698 43935 43935 0.026560412035564696 TARIWEQYL 9 Unmodified _TARIWEQYL_ 0 0 0 ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1 ENST00000473458.5_1_22:25240737-25320238:+|nuORF ENST00000473458.5_1_22:25240737-25320238:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2572631835938 2 590.31148 1178.60841 NaN NaN NaN NaN NaN NaN NaN 97.773 1 93.675 93.175 94.175 -4.0978 0 0 0 0.22621 1 19190 19190 15.847 0 1 44625 5778 29679 29699 43936 43936 0.026248168803249428 TARKKKKKKKK 11 Unmodified _TARKKKKKKKK_ 0 0 0 ENST00000567998.5_1_16:28621482-28621938:-|nuORF ENST00000567998.5_1_16:28621482-28621938:-|nuORF ENST00000567998.5_1_16:28621482-28621938:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2294921875 3 457.992667 1370.95617 NaN NaN NaN NaN NaN NaN NaN 155.05 1 155.05 154.55 155.55 0 0 0 0 0.22632 1 31079 31079 0.0072825 0.0067181 1 44626 11389 29680 29700 43937 43937 0.2855322787256682 TARLESVLH 9 Unmodified _TARLESVLH_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16;REV__MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.9974060058594 3 342.529458 1024.56654 -0.20751 -7.1077E-05 -0.51386 -0.00017601 -0.72137 -0.00024709 342.52916546311155 31.851 0.48741 29.702 29.444 29.932 -2.1483 31 12 3 0 0 0 0.8825 1 5458 5458 2.7352 0 1 1193400 + 44627 18720;23888 29681 29701 43938 43938 0.055242611917947215 TARLESVLH 9 Unmodified _TARLESVLH_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16;REV__MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 342.529458 1024.56654 -0.027123 -9.2905E-06 -0.70297 -0.00024079 -0.7301 -0.00025008 342.5291589602381 31.867 0.49751 29.637 29.336 29.833 -2.2305 -0.033933 4.0679E-05 NaN 2.7352 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1913100 + 44628 18720;23888 29681 29701 0.055242611917947215 TARLESVLH 9 Unmodified _TARLESVLH_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16;REV__MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 342.529458 1024.56654 0.28628 9.8059E-05 -0.95896 -0.00032847 -0.67268 -0.00023041 342.52898872162876 31.699 0.46082 29.673 29.444 29.905 -2.0264 0.0023781 -0.00022237 NaN 2.7352 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1453500 + 44629 18720;23888 29681 29701 0.055242611917947215 TARNINWKYV 10 Unmodified _TARNINWKYV_ 0 0 0 ENST00000496524.5_1_2:110889257-110901337:-|nuORF ENST00000496524.5_1_2:110889257-110901337:-|nuORF ENST00000496524.5_1_2:110889257-110901337:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.18597412109375 4 316.925378 1263.67241 -0.78665 -0.00024931 -0.46045 -0.00014593 -1.2471 -0.00039524 316.92532948458216 46.199 0.34346 43.333 43.097 43.441 -2.8666 11 9 2 0 0 0 0.91149 1 8378 8378 0 0 1 366150 44630 10580 29682 29702 43939 43939 0.05111597037262072 TARPGDRKQCL 11 Unmodified _TARPGDRKQCL_ 0 0 0 REV__ENSG00000239713|ENST00000407997|APOBEC3G REV__ENSG00000239713|ENST00000407997|APOBEC3G MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7642211914062 2 622.830046 1243.64554 NaN NaN NaN NaN NaN NaN NaN 142.83 1 138.18 137.68 138.68 -4.656 0 0 0 0.22943 1 28236 28236 8.7454 3.0136 1 + 44631 19775 29683 29703 43940 43940 0.033461651544484994 TARQALLT 8 Unmodified _TARQALLT_ 0 0 0 ENST00000474787.1_1_9:139974763-139976621:+|nuORF;nc|ENSG00000197355|Q3KQV9-2|UAP1L1;ENSG00000197355|ENST00000409858|UAP1L1 ENST00000474787.1_1_9:139974763-139976621:+|nuORF ENST00000474787.1_1_9:139974763-139976621:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2238464355469 2 437.261259 872.507966 NaN NaN NaN NaN NaN NaN NaN 23.002 1 23.002 22.502 23.502 0 0 0 0 0.21486 1 3908 3908 7.2892 0 1 44632 7358 29684 29704 43941 43941 0.06661204617319072 TARQRRPW 8 Unmodified _TARQRRPW_ 0 0 0 ENST00000318782.8_1_16:3022587-3022926:+|nuORF ENST00000318782.8_1_16:3022587-3022926:+|nuORF ENST00000318782.8_1_16:3022587-3022926:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.07244873046875 3 357.537058 1069.58934 0.065503 2.342E-05 -1.8466 -0.00066023 -1.7811 -0.00063681 357.5365721499014 38.129 0.71046 35.687 35.484 36.195 -2.4419 25 19 2 0 0 0 1.027 1 6749 6749 3.2813 1.9518 1 2119200 44633 8694 29685 29705 43942 43942 0.05733325099936337 TARRGKLEPN 10 Unmodified _TARRGKLEPN_ 0 0 0 REV__ENST00000372583.5_1_1:42050833-42094437:-|nuORF REV__ENST00000372583.5_1_1:42050833-42094437:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21942138671875 3 381.219395 1140.63635 0.27388 0.00010441 -0.25569 -9.7475E-05 0.01819 6.9345E-06 381.2192615177341 31.899 0.38463 29.873 29.73 30.114 -2.0264 17 10 2 0 0 0 0.73195 1 5558 5558 7.9454 0.90831 1 665780 + 44634 21026 29686 29706 43943 43943 0.07166139860441945 TARRRLCA 8 Unmodified _TARRRLCA_ 0 0 0 ENST00000593345.1_1_19:50063082-50063928:-|nuORF ENST00000593345.1_1_19:50063082-50063928:-|nuORF ENST00000593345.1_1_19:50063082-50063928:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.28466796875 3 316.183627 945.529052 NaN NaN NaN NaN NaN NaN NaN 31.553 1 29.405 28.905 29.905 -2.1483 0 0 0 0.21486 1 5440 5440 1.6526 0 1 44635 11643 29687 29707 43944 43944 0.05410891445205834 TARRRPWQ 8 Unmodified _TARRRPWQ_ 0 0 0 REV__DACT2|p.Q529Sfs*228|1|0.39|ENSG00000164488|chr6:168308172-168308172|G/-|frameshift_variant REV__DACT2|p.Q529Sfs*228|1|0.39|ENSG00000164488|chr6:168308172-168308172|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0492858886719 3 357.537058 1069.58934 -0.12785 -4.5711E-05 -0.95858 -0.00034273 -1.0864 -0.00038844 357.53665655644664 39.317 1.0058 39.317 38.783 39.789 0 87 28 4 0 0 0 1.0252 1 7390 7390 3.2813 0 1 18932000 + 44636 13637 29688 29708 43945 43945 0.05733325099936337 TARRRPWQ 8 Unmodified _TARRRPWQ_ 0 0 0 REV__DACT2|p.Q529Sfs*228|1|0.39|ENSG00000164488|chr6:168308172-168308172|G/-|frameshift_variant REV__DACT2|p.Q529Sfs*228|1|0.39|ENSG00000164488|chr6:168308172-168308172|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0675354003906 3 357.537058 1069.58934 -0.6128 -0.0002191 -0.95621 -0.00034188 -1.569 -0.00056098 357.87009990484415 38.213 0.24178 35.744 35.537 35.779 -2.4688 9 6 2 0 0 0 1.027 1 7073 7073 1.3295 0 1 1324700 + 44637 13637 29688 29708 43946 43946 0.05733325099936337 TARRRPWQ 8 Unmodified _TARRRPWQ_ 0 0 0 REV__DACT2|p.Q529Sfs*228|1|0.39|ENSG00000164488|chr6:168308172-168308172|G/-|frameshift_variant REV__DACT2|p.Q529Sfs*228|1|0.39|ENSG00000164488|chr6:168308172-168308172|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.06689453125 3 357.537058 1069.58934 -0.49008 -0.00017522 0.22025 7.8749E-05 -0.26983 -9.6474E-05 357.5369977182674 38.158 0.59053 35.753 35.501 36.091 -2.4049 19 16 2 0 0 0 1.027 1 6755 6755 1.3295 0 1 1268900 + 44638 13637 29688 29708 43947 43947 0.05733325099936337 TARSRKLWIN 10 Unmodified _TARSRKLWIN_ 0 0 0 ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3 ENSG00000146197|ENST00000274938|SCUBE3 ENSG00000146197|ENST00000274938|SCUBE3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.761474609375 2 622.864746 1243.71494 NaN NaN NaN NaN NaN NaN NaN 57.343 1 57.343 56.843 57.843 0 0 0 0 0.22588 1 10959 10959 3.5965 0 1 44639 4643 29689 29709 43948 43948 0.10282992165525684 TARVSVLRD 9 Unmodified _TARVSVLRD_ 0 0 0 REV__nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 REV__nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.01885986328125 3 339.533091 1015.57744 -1.8588 -0.00063112 1.472 0.00049978 -0.38682 -0.00013134 339.5335431966111 18.366 0.20452 16.851 16.746 16.95 -1.5148 9 5 2 0 0 0 0.88413 1 2733 2733 1.0715 0 1 173240 + 44640 15003 29690 29710 43949 43949 0.07027663566100273 TARWNDFR 8 Unmodified _TARWNDFR_ 0 0 0 REV__ENST00000369306.7_1_1:145517283-145517373:+|nuORF REV__ENST00000369306.7_1_1:145517283-145517373:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.0747985839844 3 355.845669 1064.51518 -1.6859 -0.00059992 0.41114 0.0001463 -1.2747 -0.00045361 355.8457751244923 19.563 0.44658 17.928 17.67 18.117 -1.6351 25 12 3 0 0 0 1.0277 1 2988 2988 1.6526 0 1 1245400 + 44641 20958 29691 29711 43950 43950 -0.0145006278225992 TARYIVYH 8 Unmodified _TARYIVYH_ 0 0 0 REV__ENST00000469529.6_1_17:27074825-27075044:+|nuORF REV__ENST00000469529.6_1_17:27074825-27075044:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.0169372558594 3 341.518781 1021.53451 -0.22984 -7.8496E-05 -3.1068 -0.001061 -3.3366 -0.0011395 341.517459648655 32.336 0.28121 30.187 29.999 30.281 -2.1483 9 7 2 0 0 0 0.80867 1 5610 5610 3.9444 1.2092 1 286050 + 44642 20197 29692 29712 43951 43951 0.024608935086462225 TARYPLGRM 9 Unmodified _TARYPLGRM_ 0 0 0 REV__HNRNPH2|p.H292R|1|0.63|ENSG00000126945|chrX:101412863-101412863|A/G|missense_variant REV__HNRNPH2|p.H292R|1|0.63|ENSG00000126945|chrX:101412863-101412863|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26171875 2 532.787118 1063.55968 0.28572 0.00015223 -0.71135 -0.000379 -0.42563 -0.00022677 532.7866355556176 22.493 0.31441 21.04 20.876 21.19 -1.4535 14 8 2 0 0 0 0.86627 1 3562 3562 2.9952 0 1 237800 + 44643 15874 29693 29713 43952 43952 0.03044625039569837 TASARLVVV 9 Unmodified _TASARLVVV_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2387390136719 2 458.284734 914.554916 0.28345 0.0001299 -0.17054 -7.8158E-05 0.11291 5.1743E-05 458.28462200005987 75.159 0.59025 71.526 71.23 71.82 -3.6337 27 16 2 0 0 0 0.52396 1 14259 14259 18.146 2.2992 1 1813500 + 44644 17221 29694 29714 43953 43953 0.09422064168472843 TASARLVVV 9 Unmodified _TASARLVVV_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2279357910156 2 458.284734 914.554916 0.28345 0.0001299 -0.17054 -7.8158E-05 0.11291 5.1743E-05 458.28462200005987 75.159 0.59025 71.526 71.23 71.82 -3.6337 27 16 2 0 0 0 0.7906 1 14226 14226 13.042 2.2185 1 1813500 + 44645 17221 29694 29714 43954 43954 0.09422064168472843 TASELQPK 8 Unmodified _TASELQPK_ 0 0 0 ENST00000551688.1_1_12:101790345-101801520:-|nuORF;ENST00000539055.5_1_12:101796714-101801520:-|nuORF;ENST00000551092.5_1_12:101799623-101801520:-|nuORF;ENST00000261636.12_1_12:101796714-101801562:-|nuORF ENST00000551688.1_1_12:101790345-101801520:-|nuORF ENST00000551688.1_1_12:101790345-101801520:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2188720703125 2 437.23745 872.460347 -0.091219 -3.9884E-05 1.7804 0.00077846 1.6892 0.00073858 437.2379980407641 23.37 0.32253 21.917 21.818 22.14 -1.4535 10 8 2 0 0 0 1.0191 1 3791 3791 4.756 2.6963 1 328180 44646 8303 29695 29715 43955 43955 0.01901505626483413 TASFHQQIY 9 Unmodified _TASFHQQIY_ 0 0 0 REV__DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant REV__DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7694091796875 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 109.41 1 109.41 108.91 109.91 0 0 0 0 0.23508 1 21513 21513 8.5933 0 1 + 44647 13735 29696 29716 43956 43956 -0.023760180791668972 TASFNEPFE 9 Unmodified _TASFNEPFE_ 0 0 0 REV__ENSG00000181192|ENST00000263035|DHTKD1 REV__ENSG00000181192|ENST00000263035|DHTKD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 521.1183471679688 2 521.229822 1040.44509 -0.52768 -0.00027504 -0.21308 -0.00011106 -0.74076 -0.00038611 521.2296570819915 34.566 0.5917 32.313 32.083 32.675 -2.2527 23 16 2 0 0 0 0.87634 1 6047 6047 1.4819 1.4819 1 868310 + 44648 18722 29697 29717 43957 43957 -0.07351405961367163 TASGGKAK 8 Unmodified _TASGGKAK_ 0 0 0 REV__ENSG00000197299|ENST00000355112|BLM REV__ENSG00000197299|ENST00000355112|BLM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2057800292969 2 360.205953 718.397353 NaN NaN NaN NaN NaN NaN NaN 19.363 1 17.966 17.466 18.466 -1.3966 0 0 0 0.2396 1 3188 3188 0.0082765 0 1 + 44649 19320 29698 29718 43958 43958 0.026889846290941932 TASGGKAK 8 Unmodified _TASGGKAK_ 0 0 0 REV__ENSG00000197299|ENST00000355112|BLM REV__ENSG00000197299|ENST00000355112|BLM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21136474609375 2 360.205953 718.397353 NaN NaN NaN NaN NaN NaN NaN 19.497 1 18.1 17.6 18.6 -1.3966 0 0 0 0.23749 1 3215 3215 0.0082765 0 1 + 44650 19320 29698 29718 43959 43959 0.026889846290941932 TASHWPGSL 9 Unmodified _TASHWPGSL_ 0 0 0 ENST00000452465.1_1_1:156426171-156426288:-|nuORF ENST00000452465.1_1_1:156426171-156426288:-|nuORF ENST00000452465.1_1_1:156426171-156426288:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.736572265625 2 478.235242 954.45593 0.042413 2.0283E-05 0.10477 5.0106E-05 0.14718 7.0389E-05 478.23517891422085 97.83 0.9046 93.732 93.186 94.091 -4.0978 44 25 3 0 0 0 0.37087 1 19231 19231 1.2148 0.80657 1 3037000 44651 9991 29699 29719 43960 43960 -0.02311958796417457 TASRGGGR 8 Unmodified _TASRGGGR_ 0 0 0 REV__ENST00000414563.6_1_6:157802491-157802860:+|nuORF REV__ENST00000414563.6_1_6:157802491-157802860:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2043762207031 2 381.204276 760.393999 NaN NaN NaN NaN NaN NaN NaN 30.314 1 30.314 29.814 30.814 0 0 0 0 0.21486 1 5444 5444 7.9102 0 1 + 44652 21446 29700 29720 43961 43961 0.004217345751044377 TASSHPSATP 10 Unmodified _TASSHPSATP_ 0 0 0 REV__ENST00000496262.1_1_1:45079940-45092094:+|nuORF REV__ENST00000496262.1_1_1:45079940-45092094:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7288818359375 2 478.227613 954.440674 0.037218 1.7799E-05 -0.32292 -0.00015443 -0.2857 -0.00013663 478.2275012898465 24.905 0.62152 23.371 23.129 23.751 -1.5342 30 17 2 0 0 0 0.664 1 4105 4105 14.838 1.7958 1 1652100 + 44653 19078 29701 29721 43962 43962 -0.03836870384282065 TASSLAADLA 10 Unmodified _TASSLAADLA_ 0 0 0 REV__ENST00000607031.1_1_1:2318600-2318942:-|nuORF REV__ENST00000607031.1_1_1:2318600-2318942:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2395324707031 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 67.196 1 63.869 63.369 64.369 -3.3268 0 0 0 0.22552 1 12666 12666 18.146 0 1 + 44654 23465 29702 29722 43963 43963 0.0033318441827532297 TATADRRE 8 Unmodified _TATADRRE_ 0 0 0 AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant;AHNAK2|p.D4448Gfs*6|1|0.2|ENSG00000185567|chr14:104942108-104942109|-/C|frameshift_variant;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant;AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.D983Tfs*9|1|0.16|ENSG00000185567|chr14:104952504-104952504|C/-|frameshift_variant;AHNAK2|p.D1643Tfs*9|1|0.12|ENSG00000185567|chr14:104950524-104950524|C/-|frameshift_variant;AHNAK2|p.P2536Lfs*14|1|0.11|ENSG00000185567|chr14:104947844-104947844|G/-|frameshift_variant AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2350158691406 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 130.84 1 126.2 125.7 126.7 -4.6359 0 0 0 0.23182 1 25785 25785 0.62683 0.37535 1 44655 104 29703 29723 43964 43964 -0.010580482901445976 TATANPDLL 9 Unmodified _TATANPDLL_ 0 0 0 REV__nc|ENSG00000197891|Q96S37-2|SLC22A12 REV__nc|ENSG00000197891|Q96S37-2|SLC22A12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22479248046875 2 458.242732 914.470912 0.30321 0.00013895 0.49559 0.0002271 0.7988 0.00036605 458.2430133777562 28.388 1.8803 28.388 27.801 29.681 0 155 53 5 0 0 0 0.25976 1 5128 5128 17.113 16.848 1 86017000 + 44656 19369 29704 29724 43965 43965 0.010254882809135779 TATAPDIVK 9 Unmodified _TATAPDIVK_ 0 0 0 REV__CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant REV__CCT4|p.T490Lfs*30|1|0.4|ENSG00000115484|chr2:61872105-61872105|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.229736328125 2 458.260925 914.507297 0.34459 0.00015791 -0.26443 -0.00012118 0.080157 3.6733E-05 458.260732939496 89.173 1 85.128 84.587 85.587 -4.0443 42 28 2 0 0 0 0.6329 1 16888 16888 10.824 2.9138 1 1110300 + 44657 13319 29705 29725 43966 43966 0.04662365177614447 TATAVVTV 8 Unmodified _TATAVVTV_ 0 0 0 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.20428466796875 2 381.223811 760.433069 NaN NaN NaN NaN NaN NaN NaN 20.193 1 18.558 18.058 19.058 -1.6351 0 0 0 0.21486 1 3095 3095 5.2307 0 1 44658 12413 29706 29726 43967 43967 0.04327022086113175 TATGNKGI 8 Unmodified _TATGNKGI_ 0 0 0 REV__ENSG00000196159|ENST00000394329|FAT4 REV__ENSG00000196159|ENST00000394329|FAT4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21929931640625 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 26.302 1 24.52 24.02 25.02 -1.7821 0 0 0 0.21486 1 4638 4638 4.756 0 1 + 44659 19222 29707 29727 43968 43968 0.018129672835243582 TATGQTPLAPE 11 Unmodified _TATGQTPLAPE_ 0 0 0 ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant;KDM3B|p.P1317Rfs*10|1|0.45|ENSG00000120733|chr5:138420936-138420936|C/-|frameshift_variant;nc|ENSG00000120733|Q7LBC6-2|KDM3B ENSG00000120733|ENST00000314358|KDM3B ENSG00000120733|ENST00000314358|KDM3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7783203125 2 543.277303 1084.54005 -0.01943 -1.0556E-05 -1.0877 -0.00059093 -1.1071 -0.00060149 543.2766699394045 45.519 0.80889 42.652 42.154 42.963 -2.8665 57 22 3 0 0 0 0.46434 1 8247 8247 24.991 0 1 5272900 44660 3152 29708 29728 43969 43969 0.001165275098173879 TATKHGTGR 9 Unmodified _TATKHGTGR_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16943359375 3 310.170152 927.488627 NaN NaN NaN NaN NaN NaN NaN 4.8107 1 3.8019 3.3019 4.3019 -1.0089 0 0 0 0.23508 1 137 137 0.26902 0 1 44661 2339 29709 29729 43970 43970 0.02198248326430985 TATKHGTGR 9 Unmodified _TATKHGTGR_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.169677734375 3 310.170152 927.488627 NaN NaN NaN NaN NaN NaN NaN 5.4855 1 4.4766 3.9766 4.9766 -1.0089 0 0 0 0.23508 1 251 251 0.26902 0 1 44662 2339 29709 29729 43971 43971 0.02198248326430985 TATKHGTGR 9 Unmodified _TATKHGTGR_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1700134277344 3 310.170152 927.488627 NaN NaN NaN NaN NaN NaN NaN 7.0508 1 6.036 5.536 6.536 -1.0148 0 0 0 0.23508 1 533 533 0.26902 0 1 44663 2339 29709 29729 43972 43972 0.02198248326430985 TATKKKER 8 Unmodified _TATKKKER_ 0 0 0 REV__ENST00000266557.3_1_12:6554080-6554389:+|nuORF REV__ENST00000266557.3_1_12:6554080-6554389:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25445556640625 2 481.293091 960.571629 NaN NaN NaN NaN NaN NaN NaN 15.848 1 15.848 15.348 16.348 0 0 0 0 0.21486 1 2438 2438 2.5775 0 1 + 44664 20251 29710 29730 43973 43973 0.08976565054422281 TATKKSTL 8 Unmodified _TATKKSTL_ 0 0 0 ENSG00000145012|ENST00000617246|LPP;LPP|p.C364Lfs*29|1|0.29|ENSG00000145012|chr3:188609815-188609816|-/C|frameshift_variant ENSG00000145012|ENST00000617246|LPP ENSG00000145012|ENST00000617246|LPP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25469970703125 2 425.255643 848.496732 NaN NaN NaN NaN NaN NaN NaN 25.098 1 23.564 23.064 24.064 -1.5342 0 0 0 0.21486 1 4111 4111 2.5775 0 1 44665 4588 29711 29731 43974 43974 0.06642382523193646 TATLEKRKEK 10 Unmodified _TATLEKRKEK_ 0 0 0 ENST00000478813.1_1_8:81177882-81177960:-|nuORF ENST00000478813.1_1_8:81177882-81177960:-|nuORF ENST00000478813.1_1_8:81177882-81177960:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2897338867188 2 602.356419 1202.69829 NaN NaN NaN NaN NaN NaN NaN 52.084 1 52.084 51.584 52.584 0 0 0 0 0.22588 1 9894 9894 5.7319 0.83484 1 44666 10330 29712 29732 43975 43975 0.10504446488880603 TATNRIEW 8 Unmodified _TATNRIEW_ 0 0 0 REV__ENSG00000108854|ENST00000262435|SMURF2 REV__ENSG00000108854|ENST00000262435|SMURF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 331.010009765625 3 330.838291 989.493044 -0.36951 -0.00012225 1.2798 0.0004234 0.91028 0.00030115 330.8386416228357 26.212 0.65066 26.212 25.95 26.601 0 31 18 3 0 0 0 1.0267 1 4646 4646 1.4819 0.61753 1 1611600 + 44667 15144 29713 29733 43976 43976 -0.0021228725067885534 TATPAYTNNK 10 Unmodified _TATPAYTNNK_ 0 0 0 REV__GABRA1|p.P402Tfs*9|1|0.29|ENSG00000022355|chr5:161897251-161897261|CAAGCCCGAAA/-|frameshift_variant REV__GABRA1|p.P402Tfs*9|1|0.29|ENSG00000022355|chr5:161897251-161897261|CAAGCCCGAAA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2724609375 2 540.769645 1079.52474 -0.03153 -1.7051E-05 0.47662 0.00025774 0.44509 0.00024069 540.7696783336779 64.919 0.38452 64.919 64.682 65.067 0 15 10 2 0 0 0 0.59928 1 12526 12526 19.257 4.4187 1 1785100 + 44668 13988 29714 29734 43977 43977 -0.011843392873970515 TATQPRRY 8 Unmodified _TATQPRRY_ 0 0 0 REV__sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1 REV__sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 331.0096130371094 3 331.513919 991.519927 -0.40633 -0.00013471 -0.38516 -0.00012769 -0.79149 -0.00026239 331.51278823665797 23.39 0.35564 23.39 23.233 23.589 0 14 9 2 0 0 0 1.0265 1 4011 4011 1.6526 0 1 776410 + 44669 24721 29715 29735 43978 43978 0.023828213605156634 TATRVNFY 8 Unmodified _TATRVNFY_ 0 0 0 nc|ENSG00000198039|Q14593-2|ZNF273;ENSG00000198039|ENST00000476120|ZNF273 nc|ENSG00000198039|Q14593-2|ZNF273 nc|ENSG00000198039|Q14593-2|ZNF273 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.1645202636719 3 324.50302 970.48723 -0.20979 -6.8077E-05 0.15057 4.8862E-05 -0.059213 -1.9215E-05 324.5030151232304 43.523 1.7182 43.523 42.605 44.323 0 116 49 3 0 0 0 8448 1 8113 8113 0.25148 0 1 2577300 44670 7425 29716 29736 43979 43979 0.0008061423766321241 TATSPRWP 8 Unmodified _TATSPRWP_ 0 0 0 HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant HNF1A|p.H500Tfs*31|1|0.15|ENSG00000135100|chr12:120997658-120997658|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2375793457031 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 92.258 1 88.45 87.95 88.95 -3.8083 0 0 0 0.21486 1 17676 17676 12.532 2.3482 1 44671 11909 29717 29737 43980 43980 0.00036345066178000707 TATSSITERW 10 Unmodified _TATSSITERW_ 0 0 0 REV__ENSG00000143772|ENST00000429204|ITPKB REV__ENSG00000143772|ENST00000429204|ITPKB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3280639648438 2 576.288202 1150.56185 NaN NaN NaN NaN NaN NaN NaN 122.53 1 117.99 117.49 118.49 -4.5476 0 0 0 2.8426 1 24156 24156 3.8763 1.3778 1 + 44672 16749 29718 29738 43981 43981 -0.0074066774163839 TATSSTPP 8 Unmodified _TATSSTPP_ 0 0 0 ISM1|p.D157Tfs*119|1|0.12|ENSG00000101230|chr20:13279719-13279719|C/-|frameshift_variant ISM1|p.D157Tfs*119|1|0.12|ENSG00000101230|chr20:13279719-13279719|C/-|frameshift_variant ISM1|p.D157Tfs*119|1|0.12|ENSG00000101230|chr20:13279719-13279719|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.219482421875 2 381.187426 760.360298 NaN NaN NaN NaN NaN NaN NaN 16.966 1 15.75 15.25 16.25 -1.2159 0 0 0 0.21486 1 2697 2697 5.7604 0.52976 1 44673 11957 29719 29739 43982 43982 -0.029467317073226695 TATTTAIA 8 Unmodified _TATTTAIA_ 0 0 0 REV__nc|ENSG00000033178|A0AVT1-2|UBA6 REV__nc|ENSG00000033178|A0AVT1-2|UBA6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20672607421875 2 375.205618 748.396684 NaN NaN NaN NaN NaN NaN NaN 85.079 1 81.367 80.867 81.867 -3.7117 0 0 0 0.21486 1 16254 16254 5.2307 2.6532 1 + 44674 14022 29720 29740 43983 43983 0.012421451893828817 TATTTLETL 9 Unmodified _TATTTLETL_ 0 0 0 REV__ENSG00000117983|ENST00000529681|MUC5B REV__ENSG00000117983|ENST00000529681|MUC5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 475.7691955566406 2 475.755672 949.496792 NaN NaN NaN NaN NaN NaN NaN 110.83 1 106.41 105.91 106.91 -4.4231 0 0 0 0.19704 1 21834 21834 2.8827 0 1 + 44675 15534 29721 29741 43984 43984 0.02002337732540127 TATTVVGA 8 Unmodified _TATTVVGA_ 0 0 0 REV__ENST00000422292.2_1_9:15055292-15055805:+|nuORF REV__ENST00000422292.2_1_9:15055292-15055805:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016296386719 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 98.263 1 94.131 93.631 94.631 -4.1326 0 0 0 0.21486 1 19294 19294 5.7604 0 1 + 44676 17733 29722 29742 43985 43985 0.015661625349594033 TATTVVGA 8 Unmodified _TATTVVGA_ 0 0 0 REV__ENST00000422292.2_1_9:15055292-15055805:+|nuORF REV__ENST00000422292.2_1_9:15055292-15055805:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20123291015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 98.105 1 94.148 93.648 94.648 -3.9564 0 0 0 0.21486 1 18830 18830 5.7604 0 1 + 44677 17733 29722 29742 43986 43986 0.015661625349594033 TATVDNANI 9 Unmodified _TATVDNANI_ 0 0 0 CON__Q04695;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;ENSG00000128422|ENST00000311208|KRT17;ENST00000491673.1_1_17:39779200-39780782:-|nuORF CON__Q04695 CON__Q04695 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2315673828125 2 459.729989 917.445425 0.45193 0.00020777 -0.59532 -0.00027369 -0.14339 -6.592E-05 459.72979858023075 42.444 0.62048 42.444 42.083 42.703 0 25 17 2 0 0 0 0.1793 1 7954 7954 39.957 9.3208 1 1330200 + 44678 678 29723 29743 43987 43987 -0.016599862415432654 TATVRGWE 8 Unmodified _TATVRGWE_ 0 0 0 ENST00000296930.9_1_5:170814684-170814831:+|nuORF ENST00000296930.9_1_5:170814684-170814831:+|nuORF ENST00000296930.9_1_5:170814684-170814831:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.244140625 2 460.235242 918.45593 -0.16976 -7.8128E-05 0.73492 0.00033824 0.56516 0.00026011 460.2354332241904 48.34 0.49319 45.471 45.236 45.729 -2.869 21 13 2 0 0 0 0.66265 1 9175 9175 18.135 0 1 1098500 44679 8517 29724 29744 43988 43988 -0.006559587964261482 TATVRGWE 8 Unmodified _TATVRGWE_ 0 0 0 ENST00000296930.9_1_5:170814684-170814831:+|nuORF ENST00000296930.9_1_5:170814684-170814831:+|nuORF ENST00000296930.9_1_5:170814684-170814831:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23553466796875 2 460.235242 918.45593 -0.086344 -3.9739E-05 0.32173 0.00014807 0.23538 0.00010833 460.23554159284356 48.42 0.662 45.471 45.226 45.888 -2.9499 38 18 3 0 0 0 0.66265 1 8891 8891 18.135 0 1 1488000 44680 8517 29724 29744 43989 43989 -0.006559587964261482 TATVVHSPAP 10 Unmodified _TATVVHSPAP_ 0 0 0 REV__ENST00000463857.1_1_3:51718392-51738029:+|nuORF REV__ENST00000463857.1_1_3:51718392-51738029:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640075683594 2 490.263999 978.513445 0.17497 8.5784E-05 0.35871 0.00017586 0.53368 0.00026164 490.26396477223466 59.697 1.4825 56.384 55.742 57.224 -3.3139 148 41 6 0 0 0 0.16385 1 11038 11038 1.9275 0 1 37594000 + 44681 17647 29725 29745 43990 43990 0.023328834091330464 TATVVHSPAP 10 Unmodified _TATVVHSPAP_ 0 0 0 REV__ENST00000463857.1_1_3:51718392-51738029:+|nuORF REV__ENST00000463857.1_1_3:51718392-51738029:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26348876953125 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 0.28382 1 11033 11033 1.9275 0 1 39769000 + 44682 17647 29725 29745 43991 43991 0.023328834091330464 TATWLLSQ 8 Unmodified _TATWLLSQ_ 0 0 0 CON__P01030 CON__P01030 CON__P01030 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23199462890625 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 21.299 1 19.915 19.415 20.415 -1.3847 0 0 0 0.21486 1 3345 3345 9.3474 0.75416 1 + 44683 649 29726 29746 43992 43992 0.01858096006139931 TAVAGLTS 8 Unmodified _TAVAGLTS_ 0 0 0 ENST00000463551.1_1_X:118604271-118605018:+|nuORF;ENSG00000005022|ENST00000317881|SLC25A5 ENST00000463551.1_1_X:118604271-118605018:+|nuORF ENST00000463551.1_1_X:118604271-118605018:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20159912109375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 113.89 1 109.59 109.09 110.09 -4.2918 0 0 0 0.21486 1 21935 21935 5.2307 0 1 44684 982 29727 29747 43993 43993 0.015661625349594033 TAVCFHPV 8 Unmodified _TAVCFHPV_ 0 0 0 ENST00000520132.1_1_5:150073697-150073820:-|nuORF ENST00000520132.1_1_5:150073697-150073820:-|nuORF ENST00000520132.1_1_5:150073697-150073820:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2169494628906 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 58.322 1 55.411 54.911 55.911 -2.9105 0 0 0 0.21486 1 11200 11200 10.183 3.8293 1 44685 10831 29728 29748 43994 43994 -0.01985498208887293 TAVFKAVI 8 Unmodified _TAVFKAVI_ 0 0 0 CON__P50448 CON__P50448 CON__P50448 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2532043457031 2 424.765646 847.516739 0.12817 5.4442E-05 0.37446 0.00015906 0.50263 0.0002135 424.7657534721825 23.81 0.58557 23.81 23.48 24.066 0 24 16 2 0 0 0 1.0271 1 4029 4029 0.69038 0 1 1244600 + 44686 674 29729 29749 43995 43995 0.08688178253805745 TAVFVVTLLC 10 Unmodified _TAVFVVTLLC_ 0 0 0 REV__ENST00000539526.5_1_11:117708658-117708883:-|nuORF REV__ENST00000539526.5_1_11:117708658-117708883:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2695922851562 2 533.304278 1064.594 0.44458 0.0002371 -0.19064 -0.00010167 0.25394 0.00013543 533.3040949669727 56.14 0.56244 52.95 52.492 53.055 -3.1895 21 15 2 0 0 0 0.81109 1 10352 10352 24.021 16.731 1 4148300 + 44687 22848 29730 29750 43996 43996 0.0642902840786519 TAVGALAG 8 Unmodified _TAVGALAG_ 0 0 0 ENSG00000112473|ENST00000374677|SLC39A7 ENSG00000112473|ENST00000374677|SLC39A7 ENSG00000112473|ENST00000374677|SLC39A7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.00872802734375 2 330.189771 658.36499 NaN NaN NaN NaN NaN NaN NaN 141.97 1 141.97 141.47 142.47 0 0 0 0 0.21486 1 28302 28302 2.5775 0 1 44688 2697 29731 29751 43997 43997 0.02214197226101078 TAVGNPEYL 9 Unmodified _TAVGNPEYL_ 0 0 0 ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78131103515625 2 482.242732 962.470912 NaN NaN NaN NaN NaN NaN NaN 17.241 1 16.025 15.525 16.525 -1.2159 0 0 0 0.23508 1 2754 2754 4.3292 0 1 44689 4664 29732 29752 43998 43998 -0.01182511719082413 TAVLKVFK 8 Unmodified _TAVLKVFK_ 0 0 0 ENST00000463003.1_1_13:115086670-115089303:+|nuORF ENST00000463003.1_1_13:115086670-115089303:+|nuORF ENST00000463003.1_1_13:115086670-115089303:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76873779296875 2 453.294571 904.574589 1.0612 0.00048102 -0.80925 -0.00036683 0.25191 0.00011419 453.2941926430291 25.932 0.37587 24.284 24.071 24.447 -1.6482 18 10 2 0 0 0 0.83982 1 4520 4520 2.5775 0 1 1387400 44690 10096 29733 29753 43999 43999 0.11848440179232966 TAVLRRDV 8 Unmodified _TAVLRRDV_ 0 0 0 REV__ENSG00000251692|ENST00000447419|PTX4 REV__ENSG00000251692|ENST00000447419|PTX4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.23809814453125 2 465.279983 928.545414 NaN NaN NaN NaN NaN NaN NaN 20.097 1 20.097 19.597 20.597 0 0 0 0 0.21486 1 3312 3312 5.2307 0.47466 1 + 44691 19832 29734 29754 44000 44000 0.07828295882939074 TAVNSLLIS 9 Unmodified _TAVNSLLIS_ 0 0 0 ENST00000440126.7_1_21:27512552-27512660:-|nuORF ENST00000440126.7_1_21:27512552-27512660:-|nuORF ENST00000440126.7_1_21:27512552-27512660:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2293395996094 2 459.26875 916.522947 -0.061114 -2.8068E-05 0.3036 0.00013944 0.24249 0.00011137 459.26882654383206 138.74 0.74237 134.09 133.7 134.45 -4.6439 48 20 3 0 0 0 0.52396 1 27331 27331 18.146 1.2041 1 9695300 44692 9882 29735 29755 44001 44001 0.06134651694674176 TAVPKTLG 8 Unmodified _TAVPKTLG_ 0 0 0 ENSG00000151779|ENST00000281513|NBAS;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.F322Lfs*3|1|0.13|ENSG00000151779|chr2:15489011-15489011|A/-|frameshift_variant ENSG00000151779|ENST00000281513|NBAS ENSG00000151779|ENST00000281513|NBAS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 394.1669616699219 2 393.739628 785.464704 -0.060824 -2.3949E-05 0.27112 0.00010675 0.2103 8.2802E-05 393.7396570156125 33.371 0.45073 33.371 33.129 33.58 0 24 12 3 0 0 0 1.0271 1 6042 6042 2.5775 1.8871 1 1464600 44693 4887 29736 29756 44002 44002 0.06339014840057189 TAVPKTLG 8 Unmodified _TAVPKTLG_ 0 0 0 ENSG00000151779|ENST00000281513|NBAS;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.F322Lfs*3|1|0.13|ENSG00000151779|chr2:15489011-15489011|A/-|frameshift_variant ENSG00000151779|ENST00000281513|NBAS ENSG00000151779|ENST00000281513|NBAS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 393.739628 785.464704 0.14871 5.8554E-05 -0.56766 -0.00022351 -0.41895 -0.00016496 393.7393302836639 35.406 0.48488 33.154 32.881 33.366 -2.2527 -0.01731 -0.00030687 NaN 2.5775 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1699300 44694 4887 29736 29756 0.06339014840057189 TAVPKTLG 8 Unmodified _TAVPKTLG_ 0 0 0 ENSG00000151779|ENST00000281513|NBAS;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS;NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.F322Lfs*3|1|0.13|ENSG00000151779|chr2:15489011-15489011|A/-|frameshift_variant ENSG00000151779|ENST00000281513|NBAS ENSG00000151779|ENST00000281513|NBAS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 393.739628 785.464704 -0.27465 -0.00010814 -0.11267 -4.4363E-05 -0.38732 -0.0001525 393.73951425574757 35.407 0.49082 33.131 32.861 33.352 -2.2766 -0.040396 5.1428E-05 NaN 2.5775 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1456100 44695 4887 29736 29756 0.06339014840057189 TAVPPHEPGG 10 Unmodified _TAVPPHEPGG_ 0 0 0 ENST00000552365.1_1_12:53874968-53878035:-|nuORF;nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12;ENST00000547020.1_1_12:53876285-53877059:-|nuORF ENST00000552365.1_1_12:53874968-53878035:-|nuORF ENST00000552365.1_1_12:53874968-53878035:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2406005859375 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 46.812 1 43.971 43.471 44.471 -2.8409 0 0 0 0.22588 1 8832 8832 10.074 0.72649 1 44696 4255 29737 29757 44003 44003 -0.015319761419959832 TAVSTSAI 8 Unmodified _TAVSTSAI_ 0 0 0 REV__ENSG00000205592|ENST00000454784|MUC19 REV__ENSG00000205592|ENST00000454784|MUC19 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2046203613281 2 375.205618 748.396684 NaN NaN NaN NaN NaN NaN NaN 46.334 1 43.467 42.967 43.967 -2.8666 0 0 0 0.21486 1 8431 8431 5.7604 0 1 + 44697 19595 29738 29758 44004 44004 0.01242145189371513 TAVVCVLSRE 10 Unmodified _TAVVCVLSRE_ 0 0 0 REV__ENST00000463943.1_1_20:49457191-49493142:+|nuORF REV__ENST00000463943.1_1_20:49457191-49493142:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2145690917969 3 359.53047 1075.56958 0.028475 1.0238E-05 0.1344 4.8321E-05 0.16287 5.8558E-05 359.53046429624845 44.28 0.89255 44.28 43.712 44.605 0 61 25 3 0 0 0 0.72406 1 8240 8240 5.0475 0 1 7081700 + 44698 21929 29739 29759 44005 44005 0.03481768254300732 TAVVSVPEN 9 Unmodified _TAVVSVPEN_ 0 0 0 REV__ENST00000517448.5_1_5:154210261-154230090:-|nuORF REV__ENST00000517448.5_1_5:154210261-154230090:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2491760253906 2 458.242732 914.470912 0.54107 0.00024794 -0.16533 -7.5762E-05 0.37574 0.00017218 458.2426248242289 30.327 1.7832 28.252 27.556 29.339 -2.0743 150 50 5 0 0 0 0.52396 1 5171 5171 18.146 3.3081 1 61841000 + 44699 22598 29740 29760 44006 44006 0.010254882809135779 TAWFSVHF 8 Unmodified _TAWFSVHF_ 0 0 0 ENST00000486520.1_1_21:48081621-48084236:+|nuORF;nc|ENSG00000160310|P55345-3|PRMT2;ENSG00000160310|ENST00000355680|PRMT2 ENST00000486520.1_1_21:48081621-48084236:+|nuORF ENST00000486520.1_1_21:48081621-48084236:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.0054931640625 3 332.164227 993.470852 -0.40637 -0.00013498 -0.13632 -4.5282E-05 -0.5427 -0.00018026 332.1641228027059 23.162 0.48091 23.162 22.857 23.338 0 18 13 2 0 0 0 1.0277 1 3944 3944 0.40072 0 1 725120 44700 5249 29741 29761 44007 44007 -0.026144669284235533 TAWLYEDPSY 10 Unmodified _TAWLYEDPSY_ 0 0 0 REV__ENSG00000187210|ENST00000376730|GCNT1 REV__ENSG00000187210|ENST00000376730|GCNT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7645874023438 2 622.777136 1243.53972 0.26948 0.00016783 -3.8126 -0.0023744 -3.5431 -0.0022066 622.7746785715352 55.588 0.39793 55.588 55.404 55.802 0 15 10 2 0 0 0 0.26486 1 10647 10647 39.957 5.5556 1 1360900 + 44701 19079 29742 29762 44008 44008 -0.07230892210054662 TAWMLHMA 8 Unmodified _TAWMLHMA_ 0 0 0 CHST4|p.V94Gfs*4|1|0.25|ENSG00000140835|chr16:71536958-71536958|T/-|frameshift_variant;ENSG00000140835|ENST00000539698|CHST4 CHST4|p.V94Gfs*4|1|0.25|ENSG00000140835|chr16:71536958-71536958|T/-|frameshift_variant CHST4|p.V94Gfs*4|1|0.25|ENSG00000140835|chr16:71536958-71536958|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2541198730469 2 480.725141 959.435729 0.029123 1.4E-05 0.063785 3.0663E-05 0.092909 4.4664E-05 480.7250756696323 92.76 0.95485 88.916 88.476 89.431 -3.844 68 27 3 0 0 0 0.53444 1 17839 17839 26.341 7.0843 1 8438600 44702 558 29743 29763 44009 44009 -0.0456116905224917 TAWNELKVV 9 Unmodified _TAWNELKVV_ 0 0 0 ENSG00000030304|ENST00000374448|MUSK ENSG00000030304|ENST00000374448|MUSK ENSG00000030304|ENST00000374448|MUSK MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 354.22381591796875 3 353.865958 1058.57605 -0.095685 -3.386E-05 -0.04886 -1.729E-05 -0.14454 -5.1149E-05 353.8659141279004 50.606 2.6646 50.606 48.843 51.507 0 272 76 5 0 0 0 0.55219 1 9352 9352 0.40827 0 1 63399000 44703 1155 29744 29764 44010 44010 0.04910029477309763 TAWNELKVV 9 Unmodified _TAWNELKVV_ 0 0 0 ENSG00000030304|ENST00000374448|MUSK ENSG00000030304|ENST00000374448|MUSK ENSG00000030304|ENST00000374448|MUSK MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 353.865958 1058.57605 -0.095685 -3.386E-05 -0.04886 -1.729E-05 -0.14454 -5.1149E-05 353.8659141279004 50.606 2.6646 50.606 48.843 51.507 0 0.11661 -8.4645E-05 NaN 0.40827 272 76 5 NaN NaN NaN NaN 0 NaN NaN 0 63399000 44704 1155 29744 29764 0.04910029477309763 TAWNELKVV 9 Unmodified _TAWNELKVV_ 0 0 0 ENSG00000030304|ENST00000374448|MUSK ENSG00000030304|ENST00000374448|MUSK ENSG00000030304|ENST00000374448|MUSK MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 353.865958 1058.57605 -0.48382 -0.00017121 0.30744 0.00010879 -0.17638 -6.2413E-05 353.86604811722253 53.243 2.4877 50.359 48.73 51.218 -2.8837 -0.13006 0.00029361 NaN 0.40827 264 71 5 NaN NaN NaN NaN 0 NaN NaN 0 59790000 44705 1155 29744 29764 0.04910029477309763 TAWNELKVV 9 Unmodified _TAWNELKVV_ 0 0 0 ENSG00000030304|ENST00000374448|MUSK ENSG00000030304|ENST00000374448|MUSK ENSG00000030304|ENST00000374448|MUSK MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 353.865958 1058.57605 0.056272 1.9913E-05 -0.17638 -6.2415E-05 -0.12011 -4.2502E-05 353.8658777858679 53.59 2.7331 50.503 48.742 51.475 -3.0876 0.013447 -0.00022002 NaN 0.40827 277 77 5 NaN NaN NaN NaN 0 NaN NaN 0 48210000 44706 1155 29744 29764 0.04910029477309763 TAWPEQPV 8 Unmodified _TAWPEQPV_ 0 0 0 REV__nc|ENSG00000162222|Q8N5M4-2|TTC9C REV__nc|ENSG00000162222|Q8N5M4-2|TTC9C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23724365234375 2 464.232168 926.449782 -0.50916 -0.00023637 -2.8549 -0.0013253 -3.3641 -0.0015617 464.23037410158946 16.252 0.56295 15.036 14.619 15.182 -1.2159 28 15 3 0 0 0 0.74398 1 2515 2515 7.9102 0 1 728660 + 44707 24124 29745 29765 44011 44011 -0.016384770279501026 TAWQDLYGK 9 Unmodified _TAWQDLYGK_ 0 0 0 REV__ENSG00000116183|ENST00000367662|PAPPA2 REV__ENSG00000116183|ENST00000367662|PAPPA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.268798828125 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 42.122 1 39.516 39.016 40.016 -2.606 0 0 0 0.22193 1 7569 7569 17.113 1.2657 1 + 44708 15474 29746 29766 44012 44012 -0.013031339364488304 TAWTVRSV 8 Unmodified _TAWTVRSV_ 0 0 0 nc|ENSG00000137103|A6NDV4|TMEM8B;ENSG00000137103|ENST00000643932|TMEM8B nc|ENSG00000137103|A6NDV4|TMEM8B nc|ENSG00000137103|A6NDV4|TMEM8B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.249267578125 2 460.253434 918.492316 NaN NaN NaN NaN NaN NaN NaN 88.758 1 84.763 84.263 85.263 -3.9953 0 0 0 0.21486 1 16910 16910 7.9102 0 1 44709 4067 29747 29767 44013 44013 0.029809181002860896 TAYILFYTLDK 11 Unmodified _TAYILFYTLDK_ 0 0 0 ENSG00000187323|ENST00000442544|DCC ENSG00000187323|ENST00000442544|DCC ENSG00000187323|ENST00000442544|DCC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 450.1565856933594 3 449.911345 1346.7122 NaN NaN NaN NaN NaN NaN NaN 29.056 1 29.056 28.556 29.556 0 0 0 0 0.23698 1 5180 5180 1.3296 0.11481 1 44710 7105 29748 29768 44014 44014 0.05271679197312551 TAYRADVRDY 10 Unmodified _TAYRADVRDY_ 0 0 0 ENST00000513319.5_1_5:121402440-121412860:-|nuORF;ENSG00000113083|ENST00000231004|LOX ENST00000513319.5_1_5:121402440-121412860:-|nuORF ENST00000513319.5_1_5:121402440-121412860:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.1146240234375 3 410.53516 1228.58365 -0.33368 -0.00013699 0.23539 9.6635E-05 -0.098289 -4.0351E-05 410.8695998827367 17.821 0.69861 16.51 16.169 16.868 -1.3109 26 19 2 0 0 0 0.91149 1 2879 2879 1.9064 1.2087 1 446950 44711 2723 29749 29769 44015 44015 -0.021498629930420066 TAYTDPFDP 9 Unmodified _TAYTDPFDP_ 0 0 0 REV__ENSG00000183762|ENST00000400335|KREMEN1 REV__ENSG00000183762|ENST00000400335|KREMEN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.2220153808594 3 342.818674 1025.43419 -0.65785 -0.00022552 0.9731 0.0003336 0.31525 0.00010807 342.81883631688146 58.986 1.1024 58.986 58.581 59.683 0 45 30 2 0 0 0 0.77797 1 11327 11327 2.7352 0.23671 1 1865700 + 44712 18859 29750 29770 44016 44016 -0.0775080833566335 TAYTDPFDP 9 Unmodified _TAYTDPFDP_ 0 0 0 REV__ENSG00000183762|ENST00000400335|KREMEN1 REV__ENSG00000183762|ENST00000400335|KREMEN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.818674 1025.43419 -0.47534 -0.00016295 0.55818 0.00019135 0.08284 2.8399E-05 342.8187548995713 62.119 0.7261 58.879 58.554 59.28 -3.2395 -0.032503 0.00014525 NaN 2.7352 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3699500 + 44713 18859 29750 29770 -0.0775080833566335 TAYTDPFDPSY 11 Unmodified _TAYTDPFDPSY_ 0 0 0 REV__ENSG00000183762|ENST00000400335|KREMEN1 REV__ENSG00000183762|ENST00000400335|KREMEN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.1405334472656 3 426.183793 1275.52955 -0.0096529 -4.1139E-06 1.4126 0.00060202 1.4029 0.0005979 426.18444959480036 39.391 0.48582 36.949 36.721 37.207 -2.4419 42 13 5 0 0 0 0.806 1 7013 7013 2.8433 1.5136 1 1567100 + 44714 18859 29751 29771 44017 44017 -0.09719499935272324 TAYTDPFDPSY 11 Unmodified _TAYTDPFDPSY_ 0 0 0 REV__ENSG00000183762|ENST00000400335|KREMEN1 REV__ENSG00000183762|ENST00000400335|KREMEN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 426.183793 1275.52955 -0.43213 -0.00018417 1.4911 0.00063549 1.059 0.00045132 426.184493812242 39.448 0.4255 36.899 36.681 37.106 -2.5491 -0.02494 6.778E-05 NaN 2.8433 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1377100 + 44715 18859 29751 29771 -0.09719499935272324 TAYTDPFDPSY 11 Unmodified _TAYTDPFDPSY_ 0 0 0 REV__ENSG00000183762|ENST00000400335|KREMEN1 REV__ENSG00000183762|ENST00000400335|KREMEN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 426.183793 1275.52955 -0.0096529 -4.1139E-06 1.4126 0.00060202 1.4029 0.0005979 426.18444959480036 39.391 0.48582 36.949 36.721 37.207 -2.4419 0.02494 -3.2621E-05 NaN 2.8433 42 13 5 NaN NaN NaN NaN 0 NaN NaN 0 1567100 + 44716 18859 29751 29771 -0.09719499935272324 TAYVAIDGAV 10 Unmodified _TAYVAIDGAV_ 0 0 0 REV__ENSG00000112972|ENST00000325110|HMGCS1 REV__ENSG00000112972|ENST00000325110|HMGCS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25787353515625 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 44.545 1 41.798 41.298 42.298 -2.7475 0 0 0 2.8426 1 8065 8065 0.51642 0 1 + 44717 15321 29752 29772 44018 44018 0.012100613149982564 TCCCCCCWA 9 Unmodified _TCCCCCCWA_ 0 0 0 ENST00000526531.1_1_11:830548-831706:+|nuORF;ENSG00000177685|ENST00000525077|CRACR2B;ENST00000527763.5_1_11:829331-831706:+|nuORF ENST00000526531.1_1_11:830548-831706:+|nuORF ENST00000526531.1_1_11:830548-831706:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 498.1201171875 2 498.122165 994.229777 NaN NaN NaN NaN NaN NaN NaN 166.27 1 161.33 160.83 161.83 -4.9484 0 0 0 0.23508 1 32565 32565 0 0 1 44718 6531 29753 29773 44019 44019 -0.2675689288136027 TCCYCCCCLC 10 Unmodified _TCCYCCCCLC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.1336975097656 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 89.738 1 89.738 89.238 90.238 0 0 0 0 0.22588 1 17527 17527 0 0 1 44719 2039 29754 29774 44020 44020 -0.2835571427310697 TCCYCCCCLC 10 Unmodified _TCCYCCCCLC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.1046447753906 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 127.41 1 127.41 126.91 127.91 0 0 0 0 0.22588 1 25149 25149 0 0 1 44720 2039 29754 29774 44021 44021 -0.2835571427310697 TCCYCCCCLC 10 Unmodified _TCCYCCCCLC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.09228515625 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 128.35 1 128.35 127.85 128.85 0 0 0 0 0.22588 1 25348 25348 0 0 1 44721 2039 29754 29774 44022 44022 -0.2835571427310697 TCCYCCCCLC 10 Unmodified _TCCYCCCCLC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.10443115234375 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 132.47 1 132.47 131.97 132.97 0 0 0 0 0.22588 1 26189 26189 0 0 1 44722 2039 29754 29774 44023 44023 -0.2835571427310697 TCCYCCCCLC 10 Unmodified _TCCYCCCCLC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.10443115234375 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 143.24 1 138.21 137.71 138.71 -5.0261 0 0 0 0.22588 1 27615 27615 0 0 1 44723 2039 29754 29774 44024 44024 -0.2835571427310697 TCCYCCCCLC 10 Unmodified _TCCYCCCCLC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.10443115234375 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 145.01 1 139.94 139.44 140.44 -5.0671 0 0 0 0.22588 1 28002 28002 0 0 1 44724 2039 29754 29774 44025 44025 -0.2835571427310697 TCCYCCCCLC 10 Unmodified _TCCYCCCCLC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.10443115234375 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 149.14 1 143.94 143.44 144.44 -5.1994 0 0 0 0.22588 1 28885 28885 0 0 1 44725 2039 29754 29774 44026 44026 -0.2835571427310697 TCCYCCCCLC 10 Unmodified _TCCYCCCCLC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.0802307128906 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 149.21 1 144.01 143.51 144.51 -5.1994 0 0 0 0.22588 1 28903 28903 0 0 1 44726 2039 29754 29774 44027 44027 -0.2835571427310697 TCCYCCCCLC 10 Unmodified _TCCYCCCCLC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.1038513183594 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 149.53 1 144.33 143.83 144.83 -5.1994 0 0 0 0.22588 1 28965 28965 0 0 1 44727 2039 29754 29774 44028 44028 -0.2835571427310697 TCCYCCCCLC 10 Unmodified _TCCYCCCCLC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 373.09814453125 3 373.097252 1116.26993 NaN NaN NaN NaN NaN NaN NaN 174.74 1 169.85 169.35 170.35 -4.8916 0 0 0 0.22588 1 34797 34797 0 0 1 44728 2039 29754 29774 44029 44029 -0.2835571427310697 TCEDIDECA 9 Unmodified _TCEDIDECA_ 0 0 0 CON__ENSEMBL:ENSBTAP00000016046;nc|ENSG00000077942|P23142-2|FBLN1;nc|ENSG00000077942|P23142-3|FBLN1;nc|ENSG00000077942|P23142-4|FBLN1;ENSG00000077942|ENST00000327858|FBLN1 CON__ENSEMBL:ENSBTAP00000016046;nc|ENSG00000077942|P23142-2|FBLN1 nc|ENSG00000077942|P23142-2|FBLN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.2173156738281 3 333.452897 997.336862 -0.42812 -0.00014276 -2.3012 -0.00076735 -2.7293 -0.00091011 333.4523861856034 117.49 0.66772 117.49 117.16 117.83 0 25 18 2 0 0 0 0.81221 1 23102 23102 1.1933 0 1 2222000 + 44729 640;1565 29755 29775 44030 44030 -0.16191281598469232 TCEHCDYY 8 Unmodified _TCEHCDYY_ 0 0 0 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.117431640625 3 345.117849 1032.33172 NaN NaN NaN NaN NaN NaN NaN 24.173 1 24.173 23.673 24.673 0 0 0 0 0.23837 1 4154 4154 0.62683 0.61855 1 + 44730 19404 29756 29776 44031 44031 -0.1831554067041452 TCEHCDYY 8 Unmodified _TCEHCDYY_ 0 0 0 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.1243896484375 3 345.117849 1032.33172 NaN NaN NaN NaN NaN NaN NaN 24.304 1 24.304 23.804 24.804 0 0 0 0 0.23584 1 4182 4182 0.62683 0.61855 1 + 44731 19404 29756 29776 44032 44032 -0.1831554067041452 TCEPTSESPFY 11 Unmodified _TCEPTSESPFY_ 0 0 0 NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1 NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7587890625 2 630.758086 1259.50162 NaN NaN NaN NaN NaN NaN NaN 110.91 1 110.91 110.41 111.41 0 0 0 0 0.22632 1 21817 21817 0.0059557 0 1 44732 4744 29757 29777 44033 44033 -0.11775146187005703 TCEPTSESPFY 11 Unmodified _TCEPTSESPFY_ 0 0 0 NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1 NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7587890625 2 630.758086 1259.50162 NaN NaN NaN NaN NaN NaN NaN 110.92 1 110.92 110.42 111.42 0 0 0 0 0.23324 1 21819 21819 5.7319 0.83484 1 44733 4744 29757 29777 44034 44034 -0.11775146187005703 TCHPAPGA 8 Unmodified _TCHPAPGA_ 0 0 0 REV__ENST00000549114.5_1_16:779204-779453:+|nuORF REV__ENST00000549114.5_1_16:779204-779453:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.1787414550781 2 377.171056 752.327559 NaN NaN NaN NaN NaN NaN NaN 59.906 1 59.906 59.406 60.406 0 0 0 0 0.23899 1 11481 11481 1.3295 0 1 + 44734 22917 29758 29778 44035 44035 -0.05851217311169421 TCIRTTLDR 9 Unmodified _TCIRTTLDR_ 0 0 0 ENSG00000136560|ENST00000392749|TANK ENSG00000136560|ENST00000392749|TANK ENSG00000136560|ENST00000392749|TANK MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2022705078125 3 360.193969 1077.56008 NaN NaN NaN NaN NaN NaN NaN 77.676 1 77.676 77.176 78.176 0 0 0 0 0.23508 1 15108 15108 5.4027 0.5057 1 44735 4023 29759 29779 44036 44036 0.024399999687602758 TCIVKVLFTLL 11 Unmodified _TCIVKVLFTLL_ 0 0 0 ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3 ENSG00000144357|ENST00000272793|UBR3 ENSG00000144357|ENST00000272793|UBR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 417.21612548828125 3 417.257799 1248.75157 NaN NaN NaN NaN NaN NaN NaN 64.47 1 61.213 60.713 61.713 -3.2567 0 0 0 0.23634 1 12105 12105 1.3296 0 1 44736 4548 29760 29780 44037 44037 0.13714107947203047 TCKKEENDD 9 Unmodified _TCKKEENDD_ 0 0 0 ENSG00000068784|ENST00000263736|SRBD1;SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant ENSG00000068784|ENST00000263736|SRBD1 ENSG00000068784|ENST00000263736|SRBD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.1332092285156 3 361.153728 1080.43935 NaN NaN NaN NaN NaN NaN NaN 76.419 1 76.419 75.919 76.919 0 0 0 0 0.23508 1 14851 14851 0.96228 0.45632 1 44737 1410 29761 29781 44038 44038 -0.09764872535356517 TCKKEENDD 9 Unmodified _TCKKEENDD_ 0 0 0 ENSG00000068784|ENST00000263736|SRBD1;SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant ENSG00000068784|ENST00000263736|SRBD1 ENSG00000068784|ENST00000263736|SRBD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.03131103515625 3 361.153728 1080.43935 NaN NaN NaN NaN NaN NaN NaN 4.4561 1 3.8299 3.3299 4.3299 -0.62626 0 0 0 0.23508 1 89 89 0.96228 0.55401 1 44738 1410 29761 29781 44039 44039 -0.09764872535356517 TCKKEENDD 9 Unmodified _TCKKEENDD_ 0 0 0 ENSG00000068784|ENST00000263736|SRBD1;SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant ENSG00000068784|ENST00000263736|SRBD1 ENSG00000068784|ENST00000263736|SRBD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.0312194824219 3 361.153728 1080.43935 NaN NaN NaN NaN NaN NaN NaN 4.7823 1 4.156 3.656 4.656 -0.62626 0 0 0 0.23508 1 153 153 0.96228 0.55401 1 44739 1410 29761 29781 44040 44040 -0.09764872535356517 TCKKEENDD 9 Unmodified _TCKKEENDD_ 0 0 0 ENSG00000068784|ENST00000263736|SRBD1;SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant ENSG00000068784|ENST00000263736|SRBD1 ENSG00000068784|ENST00000263736|SRBD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1407775878906 3 361.153728 1080.43935 NaN NaN NaN NaN NaN NaN NaN 79.782 1 76.272 75.772 76.772 -3.5102 0 0 0 0.23508 1 15582 15582 0.96228 0 1 44740 1410 29761 29781 44041 44041 -0.09764872535356517 TCKKEENDD 9 Unmodified _TCKKEENDD_ 0 0 0 ENSG00000068784|ENST00000263736|SRBD1;SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant ENSG00000068784|ENST00000263736|SRBD1 ENSG00000068784|ENST00000263736|SRBD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.1531066894531 3 361.153728 1080.43935 NaN NaN NaN NaN NaN NaN NaN 143.28 1 138.25 137.75 138.75 -5.0261 0 0 0 0.23508 1 27623 27623 0.96228 0.55401 1 44741 1410 29761 29781 44042 44042 -0.09764872535356517 TCKKEENDD 9 Unmodified _TCKKEENDD_ 0 0 0 ENSG00000068784|ENST00000263736|SRBD1;SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant ENSG00000068784|ENST00000263736|SRBD1 ENSG00000068784|ENST00000263736|SRBD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.16326904296875 3 361.153728 1080.43935 NaN NaN NaN NaN NaN NaN NaN 132.9 1 128.1 127.6 128.6 -4.799 0 0 0 0.23508 1 25579 25579 0.96228 0.55401 1 44742 1410 29761 29781 44043 44043 -0.09764872535356517 TCLTVFKVS 9 Unmodified _TCLTVFKVS_ 0 0 0 ENST00000436336.6_1_7:99054622-99054787:+|nuORF ENST00000436336.6_1_7:99054622-99054787:+|nuORF ENST00000436336.6_1_7:99054622-99054787:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.2062683105469 3 333.184411 996.531403 NaN NaN NaN NaN NaN NaN NaN 118.94 1 114.44 113.94 114.94 -4.502 0 0 0 0.23508 1 23453 23453 4.5289 0 1 44743 9839 29762 29782 44044 44044 0.032998823396496846 TCRQLKTL 8 Unmodified _TCRQLKTL_ 0 0 0 ENSG00000154237|ENST00000388948|LRRK1 ENSG00000154237|ENST00000388948|LRRK1 ENSG00000154237|ENST00000388948|LRRK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7763366699219 2 481.776219 961.537886 NaN NaN NaN NaN NaN NaN NaN 153.29 1 148.02 147.52 148.52 -5.2669 0 0 0 0.23107 1 29712 29712 0.62683 0 1 44744 5001 29763 29783 44045 44045 0.055578202910282926 TDACALRMV 9 Unmodified _TDACALRMV_ 0 0 0 REV__ENSG00000172289|ENST00000307552|OR10V1 REV__ENSG00000172289|ENST00000307552|OR10V1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2646179199219 2 490.238612 978.462672 -0.020275 -9.9396E-06 0.037023 1.815E-05 0.016748 8.2106E-06 490.23868719260764 72.041 0.53076 68.73 68.494 69.025 -3.3107 18 14 2 0 0 0 0.52396 1 13987 13987 18.146 5.6148 1 1396000 + 44745 18279 29764 29784 44046 44046 -0.027421052317322392 TDACALRMV 9 Unmodified _TDACALRMV_ 0 0 0 REV__ENSG00000172289|ENST00000307552|OR10V1 REV__ENSG00000172289|ENST00000307552|OR10V1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 490.238612 978.462672 -0.020275 -9.9396E-06 0.037023 1.815E-05 0.016748 8.2106E-06 490.23868719260764 72.041 0.53076 68.73 68.494 69.025 -3.3107 -0.054258 -0.00022586 NaN 18.146 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1396000 + 44746 18279 29764 29784 -0.027421052317322392 TDACALRMV 9 Unmodified _TDACALRMV_ 0 0 0 REV__ENSG00000172289|ENST00000307552|OR10V1 REV__ENSG00000172289|ENST00000307552|OR10V1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.238612 978.462672 0.3737 0.0001832 0.15383 7.5415E-05 0.52753 0.00025862 490.2386715734399 72.424 0.47002 68.797 68.552 69.022 -3.6275 0.011944 -0.00011133 NaN 18.146 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1074300 + 44747 18279 29764 29784 -0.027421052317322392 TDACALRMV 9 Unmodified _TDACALRMV_ 0 0 0 REV__ENSG00000172289|ENST00000307552|OR10V1 REV__ENSG00000172289|ENST00000307552|OR10V1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 490.238612 978.462672 0.1216 5.9612E-05 1.1448 0.00056124 1.2664 0.00062085 490.23926545582333 72.365 0.58559 68.827 68.501 69.087 -3.5385 0.042314 0.00086032 NaN 18.146 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 936910 + 44748 18279 29764 29784 -0.027421052317322392 TDACLSAT 8 Unmodified _TDACLSAT_ 0 0 0 ENST00000244174.10_2_X:155239695-155239764:+|nuORF ENST00000244174.10_2_X:155239695-155239764:+|nuORF ENST00000244174.10_2_X:155239695-155239764:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 391.1734313964844 2 391.173461 780.332369 NaN NaN NaN NaN NaN NaN NaN 81.527 1 77.97 77.47 78.47 -3.557 0 0 0 0.23025 1 15924 15924 0.25148 0 1 44749 8199 29765 29785 44047 44047 -0.06658377959058726 TDAERQAVTP 10 Unmodified _TDAERQAVTP_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.769775390625 2 544.272552 1086.53055 0.26979 0.00014684 0.16362 8.9056E-05 0.43342 0.0002359 544.2728174124335 17.664 0.25001 17.664 17.517 17.767 0 12 6 2 0 0 0 0.85084 1 2818 2818 19.362 0 1 1343400 44750 1097 29766 29786 44048 44048 -0.009252407757003311 TDAERQAVTP 10 Unmodified _TDAERQAVTP_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 544.272552 1086.53055 0.24871 0.00013537 -0.8755 -0.00047651 -0.62678 -0.00034114 544.2724222038895 18.921 0.37374 17.61 17.42 17.794 -1.3109 -0.027003 -0.00061934 NaN 19.362 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 947620 44751 1097 29766 29786 -0.009252407757003311 TDAEVLQRL 9 Unmodified _TDAEVLQRL_ 0 0 0 REV__CON__A2AB72 REV__CON__A2AB72 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2749633789062 2 522.787838 1043.56112 0.14806 7.7406E-05 -0.82092 -0.00042917 -0.67285 -0.00035176 522.7870737218162 98.195 0.40606 94.239 94.127 94.533 -3.9564 18 11 2 0 0 0 0.85111 1 18860 18860 6.7232 0 1 724620 + + 44752 13500 29767 29787 44049 44049 0.04108537609317864 TDAGDLPVQ 9 Unmodified _TDAGDLPVQ_ 0 0 0 REV__ENSG00000146834|ENST00000310512|MEPCE REV__ENSG00000146834|ENST00000310512|MEPCE MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22412109375 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 28.148 1 26.192 25.692 26.692 -1.9561 0 0 0 0.091359 1 5025 5025 39.957 17.221 1 + 44753 16903 29768 29788 44050 44050 -0.0261138861579866 TDAKAREAAL 10 Unmodified _TDAKAREAAL_ 0 0 0 PCNT|p.E1401K|1|0.38|ENSG00000160299|chr21:46391361-46391361|G/A|missense_variant PCNT|p.E1401K|1|0.38|ENSG00000160299|chr21:46391361-46391361|G/A|missense_variant PCNT|p.E1401K|1|0.38|ENSG00000160299|chr21:46391361-46391361|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6909790039062 2 523.285463 1044.55637 0.40704 0.000213 0.034201 1.7897E-05 0.44124 0.0002309 523.2853608608167 49.791 0.40792 49.791 49.584 49.992 0 17 11 2 0 0 0 0.82238 1 9412 9412 17.113 3.2068 1 798670 44754 12763 29769 29789 44051 44051 0.035876534665476356 TDAKAREAAL 10 Unmodified _TDAKAREAAL_ 0 0 0 PCNT|p.E1401K|1|0.38|ENSG00000160299|chr21:46391361-46391361|G/A|missense_variant PCNT|p.E1401K|1|0.38|ENSG00000160299|chr21:46391361-46391361|G/A|missense_variant PCNT|p.E1401K|1|0.38|ENSG00000160299|chr21:46391361-46391361|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.285463 1044.55637 -0.56085 -0.00029349 1.1652 0.00060971 0.60431 0.00031623 523.2860095167669 52.703 0.35632 49.615 49.405 49.761 -3.0876 -0.087873 0.00060793 NaN 17.113 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 863920 44755 12763 29769 29789 0.035876534665476356 TDAKDQSSQ 9 Unmodified _TDAKDQSSQ_ 0 0 0 ENSG00000132854|ENST00000371153|KANK4 ENSG00000132854|ENST00000371153|KANK4 ENSG00000132854|ENST00000371153|KANK4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2543640136719 2 490.219985 978.425418 0.45689 0.00022397 -2.0325 -0.00099639 -1.5757 -0.00077242 490.2188001909158 104.17 0.71642 100.11 99.735 100.45 -4.0543 22 19 2 0 0 0 0.76271 1 20006 20006 10.074 1.3285 1 742750 44756 3767 29770 29790 44052 44052 -0.064657819721333 TDAKPRQDAAM 11 Unmodified _TDAKPRQDAAM_ 0 0 0 REV__ENSG00000175309|ENST00000308158|PHYKPL REV__ENSG00000175309|ENST00000308158|PHYKPL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2944946289062 2 602.292962 1202.57137 NaN NaN NaN NaN NaN NaN NaN 76.142 1 72.508 72.008 73.008 -3.6337 0 0 0 0.20277 1 14492 14492 18.146 9.9908 1 + 44757 18470 29771 29791 44053 44053 -0.021812227277450802 TDAPERHM 8 Unmodified _TDAPERHM_ 0 0 0 REV__ENSG00000109265|ENST00000682029|CRACD REV__ENSG00000109265|ENST00000682029|CRACD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7228698730469 2 478.716359 955.418164 NaN NaN NaN NaN NaN NaN NaN 41.906 1 39.3 38.8 39.8 -2.606 0 0 0 0.21171 1 7528 7528 15.847 2.3393 1 + 44758 15158 29772 29792 44054 44054 -0.06132793053552632 TDAQIARPL 9 Unmodified _TDAQIARPL_ 0 0 0 ENST00000344756.8_1_7:155089988-155093980:+|nuORF ENST00000344756.8_1_7:155089988-155093980:+|nuORF ENST00000344756.8_1_7:155089988-155093980:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 493.2890930175781 2 492.777274 983.539994 -0.012837 -6.3258E-06 0.047374 2.3345E-05 0.034537 1.7019E-05 492.77728595353176 73.674 0.87537 70.31 69.867 70.742 -3.3643 84 24 4 0 0 0 0.12369 1 14322 14322 37.075 15.324 1 39633000 44759 8897 29773 29793 44055 44055 0.04756572300470907 TDAQIARPL 9 Unmodified _TDAQIARPL_ 0 0 0 ENST00000344756.8_1_7:155089988-155093980:+|nuORF ENST00000344756.8_1_7:155089988-155093980:+|nuORF ENST00000344756.8_1_7:155089988-155093980:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 492.777274 983.539994 0.0022531 1.1103E-06 0.04858 2.3939E-05 0.050833 2.5049E-05 492.7772861193469 70.513 0.97357 70.513 70.032 71.006 0 0.12941 8.7148E-05 NaN 37.075 103 27 5 NaN NaN NaN NaN 0 NaN NaN 0 49794000 44760 8897 29773 29793 0.04756572300470907 TDAQIARPL 9 Unmodified _TDAQIARPL_ 0 0 0 ENST00000344756.8_1_7:155089988-155093980:+|nuORF ENST00000344756.8_1_7:155089988-155093980:+|nuORF ENST00000344756.8_1_7:155089988-155093980:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 492.777274 983.539994 0.22762 0.00011217 -0.14578 -7.1836E-05 0.081842 4.033E-05 492.77718266359045 74.01 0.97071 70.334 69.861 70.832 -3.6764 -0.049535 -0.0001044 NaN 37.075 93 27 4 NaN NaN NaN NaN 0 NaN NaN 0 38374000 44761 8897 29773 29793 0.04756572300470907 TDAQIARPL 9 Unmodified _TDAQIARPL_ 0 0 0 ENST00000344756.8_1_7:155089988-155093980:+|nuORF ENST00000344756.8_1_7:155089988-155093980:+|nuORF ENST00000344756.8_1_7:155089988-155093980:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 492.777274 983.539994 0.15855 7.813E-05 -0.12412 -6.1165E-05 0.034428 1.6965E-05 492.77721653724046 73.971 1.0173 70.377 69.867 70.884 -3.594 -0.0063832 -8.3059E-05 NaN 37.075 99 28 5 NaN NaN NaN NaN 0 NaN NaN 0 47995000 44762 8897 29773 29793 0.04756572300470907 TDARPLRRP 9 Unmodified _TDARPLRRP_ 0 0 0 REV__ENST00000498631.5_1_X:48455913-48456412:+|nuORF REV__ENST00000498631.5_1_X:48455913-48456412:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.268310546875 2 541.314889 1080.61522 NaN NaN NaN NaN NaN NaN NaN 102.59 1 98.568 98.068 99.068 -4.0212 0 0 0 0.23508 1 19719 19719 6.7232 0.51738 1 + 44763 22418 29774 29794 44056 44056 0.0781417455157225 TDASALHTF 9 Unmodified _TDASALHTF_ 0 0 0 ENST00000267859.7_1_15:59955471-59955648:-|nuORF ENST00000267859.7_1_15:59955471-59955648:-|nuORF ENST00000267859.7_1_15:59955471-59955648:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77386474609375 2 481.732532 961.45051 NaN NaN NaN NaN NaN NaN NaN 58.046 1 54.794 54.294 55.294 -3.2517 0 0 0 0.21469 1 10778 10778 19.257 1.1106 1 44764 8386 29775 29795 44057 44057 -0.031756823789010014 TDASNPAPAL 10 Unmodified _TDASNPAPAL_ 0 0 0 nc|ENSG00000233718|P40205|MYCNOS nc|ENSG00000233718|P40205|MYCNOS nc|ENSG00000233718|P40205|MYCNOS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73785400390625 2 478.737814 955.461075 0.22197 0.00010627 -0.28599 -0.00013691 -0.064021 -3.0649E-05 478.73780590664893 44.664 0.87637 44.664 44.357 45.233 0 34 24 2 0 0 0 0.59736 1 8442 8442 19.362 2.249 1 857820 44765 12611 29776 29796 44058 44058 -0.018436997244748454 TDCDEMEHD 9 Unmodified _TDCDEMEHD_ 0 0 0 REV__ENSG00000010017|ENST00000011619|RANBP9 REV__ENSG00000010017|ENST00000011619|RANBP9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7933959960938 2 547.673696 1093.33284 0.36417 0.00019945 1.4369 0.00078694 1.801 0.00098638 547.6747030184866 36.096 0.45646 33.819 33.56 34.017 -2.2766 17 12 2 0 0 0 0.87888 1 6322 6322 2.0598 1.6014 1 430220 + 44766 13915 29777 29797 44059 44059 -0.21009371092191031 TDCGCSPA 8 Unmodified _TDCGCSPA_ 0 0 0 ENST00000603624.1_1_9:138360069-138360393:-|nuORF ENST00000603624.1_1_9:138360069-138360393:-|nuORF ENST00000603624.1_1_9:138360069-138360393:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.8741149902344 2 377.130739 752.246925 NaN NaN NaN NaN NaN NaN NaN 59.169 1 56.259 55.759 56.759 -2.9105 0 0 0 0.23749 1 11370 11370 0.12286 0 1 44767 11725 29778 29798 44060 44060 -0.13910866416392764 TDCRPRPLH 9 Unmodified _TDCRPRPLH_ 0 0 0 REV__ENST00000583938.5_1_18:72178083-72181050:+|nuORF REV__ENST00000583938.5_1_18:72178083-72181050:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.76904296875 2 547.779825 1093.5451 NaN NaN NaN NaN NaN NaN NaN 20.858 1 20.858 20.358 21.358 0 0 0 0 0.23508 1 3468 3468 11.64 0.81637 1 + 44768 23253 29779 29799 44061 44061 0.002065528914272363 TDCRVRVA 8 Unmodified _TDCRVRVA_ 0 0 0 ENST00000256458.4_1_3:10255026-10264411:+|nuORF;IRAK2|p.N268Mfs*102|1|0.23|ENSG00000134070|chr3:10216943-10216943|C/-|frameshift_variant ENST00000256458.4_1_3:10255026-10264411:+|nuORF ENST00000256458.4_1_3:10255026-10264411:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2426452636719 2 460.242544 918.470534 NaN NaN NaN NaN NaN NaN NaN 100.7 1 100.7 100.2 101.2 0 0 0 0 0.22692 1 19757 19757 0.62683 0.21856 1 44769 8256 29780 29800 44062 44062 0.008037900800673015 TDCSCPDTYD 10 Unmodified _TDCSCPDTYD_ 0 0 0 REV__nc|ENSG00000198369|Q7Z698-2|SPRED2 REV__nc|ENSG00000198369|Q7Z698-2|SPRED2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 374.1863098144531 3 373.79169 1118.35324 0.14985 5.6013E-05 0.48091 0.00017976 0.63076 0.00023577 373.79185076435294 62.832 0.91676 59.416 58.914 59.831 -3.4158 33 25 2 0 0 0 1.1309 1 11740 11740 0.043787 0.042406 1 1291100 + 44770 19408 29781 29801 44063 44063 -0.2012020043237044 TDCSCPDTYD 10 Unmodified _TDCSCPDTYD_ 0 0 0 REV__nc|ENSG00000198369|Q7Z698-2|SPRED2 REV__nc|ENSG00000198369|Q7Z698-2|SPRED2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 373.79169 1118.35324 -0.16807 -6.2824E-05 0.55529 0.00020756 0.38721 0.00014474 373.79193336229105 62.267 0.59599 59.305 59.179 59.775 -2.9614 -0.034515 -6.9697E-05 NaN 0.043787 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1031700 + 44771 19408 29781 29801 -0.2012020043237044 TDCSCPDTYD 10 Unmodified _TDCSCPDTYD_ 0 0 0 REV__nc|ENSG00000198369|Q7Z698-2|SPRED2 REV__nc|ENSG00000198369|Q7Z698-2|SPRED2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 373.79169 1118.35324 -0.45916 -0.00017163 0.91485 0.00034196 0.45569 0.00017033 373.792040239009 62.537 0.62129 59.298 59.073 59.694 -3.2395 -0.04189 0.00033351 NaN 0.043787 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1352200 + 44772 19408 29781 29801 -0.2012020043237044 TDCSDDSDGE 10 Unmodified _TDCSDDSDGE_ 0 0 0 REV__ENSG00000167778|ENST00000301463|SPRYD3 REV__ENSG00000167778|ENST00000301463|SPRYD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2800903320312 2 522.158933 1042.30331 -0.81641 -0.0004263 -4.0712 -0.0021258 -4.8877 -0.0025521 522.1564331753584 108.27 0.13366 103.85 103.75 103.89 -4.4121 5 3 2 0 0 0 0.91149 1 20778 20778 3.2813 0 1 416310 + 44773 17970 29782 29802 44064 44064 -0.21614611836662334 TDCWPCQP 8 Unmodified _TDCWPCQP_ 0 0 0 ZNF837|p.P266Rfs*141|1|0.3|ENSG00000152475|chr19:58368536-58368536|G/-|frameshift_variant;ENSG00000152475|ENST00000597582|ZNF837 ZNF837|p.P266Rfs*141|1|0.3|ENSG00000152475|chr19:58368536-58368536|G/-|frameshift_variant ZNF837|p.P266Rfs*141|1|0.3|ENSG00000152475|chr19:58368536-58368536|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.70989990234375 3 317.122934 948.346973 NaN NaN NaN NaN NaN NaN NaN 66.973 1 63.864 63.364 64.364 -3.1086 0 0 0 0.2386 1 12987 12987 0.0082765 0 1 44774 4925 29783 29803 44065 44065 -0.1292662908258535 TDDCGLGLSY 10 Unmodified _TDDCGLGLSY_ 0 0 0 nc|ENSG00000008735|Q13387-4|MAPK8IP2;ENSG00000008735|ENST00000329492|MAPK8IP2 nc|ENSG00000008735|Q13387-4|MAPK8IP2 nc|ENSG00000008735|Q13387-4|MAPK8IP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2763671875 2 522.221139 1042.42773 NaN NaN NaN NaN NaN NaN NaN 53.242 1 50.155 49.655 50.655 -3.0876 0 0 0 0.22552 1 9798 9798 18.146 0 1 44775 1048 29784 29804 44066 44066 -0.09179069558672381 TDDDITHKV 9 Unmodified _TDDDITHKV_ 0 0 0 nc|ENSG00000149927|Q14183-2|DOC2A;ENST00000564233.5_1_16:30020315-30023028:-|nuORF;ENSG00000149927|ENST00000350119|DOC2A nc|ENSG00000149927|Q14183-2|DOC2A nc|ENSG00000149927|Q14183-2|DOC2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2739868164062 2 522.253828 1042.4931 0.38991 0.00020363 0.41283 0.0002156 0.80274 0.00041923 522.2540313814814 75.75 1.2462 75.75 74.921 76.167 0 64 35 3 0 0 0 0.68435 1 14604 14604 7.2892 0 1 12316000 44776 4815 29785 29805 44067 44067 -0.026443320413363836 TDDGRLLEY 9 Unmodified _TDDGRLLEY_ 0 0 0 ENSG00000101474|ENST00000217456|APMAP;APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant;nc|ENSG00000101474|Q9HDC9-2|APMAP;APMAP|p.F346Lfs*9|1|0.19|ENSG00000101474|chr20:24968895-24968895|A/-|frameshift_variant ENSG00000101474|ENST00000217456|APMAP ENSG00000101474|ENST00000217456|APMAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2616577148438 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 105.67 1 101.41 100.91 101.91 -4.2638 0 0 0 0.11195 1 20798 20798 36.127 3.8215 1 44777 2073 29786 29806 44068 44068 -0.028280455243020697 TDDGRLLEY 9 Unmodified _TDDGRLLEY_ 0 0 0 ENSG00000101474|ENST00000217456|APMAP;APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant;nc|ENSG00000101474|Q9HDC9-2|APMAP;APMAP|p.F346Lfs*9|1|0.19|ENSG00000101474|chr20:24968895-24968895|A/-|frameshift_variant ENSG00000101474|ENST00000217456|APMAP ENSG00000101474|ENST00000217456|APMAP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2614135742188 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 105.82 1 101.44 100.94 101.94 -4.3764 0 0 0 0.11195 1 20287 20287 36.127 5.4905 1 44778 2073 29786 29806 44069 44069 -0.028280455243020697 TDDGRLLEY 9 Unmodified _TDDGRLLEY_ 0 0 0 ENSG00000101474|ENST00000217456|APMAP;APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant;nc|ENSG00000101474|Q9HDC9-2|APMAP;APMAP|p.F346Lfs*9|1|0.19|ENSG00000101474|chr20:24968895-24968895|A/-|frameshift_variant ENSG00000101474|ENST00000217456|APMAP ENSG00000101474|ENST00000217456|APMAP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2626342773438 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 105.56 1 101.47 100.97 101.97 -4.0913 0 0 0 0.070386 1 20306 20306 43.858 7.7313 1 44779 2073 29786 29806 44070 44070 -0.028280455243020697 TDDHFKPSP 9 Unmodified _TDDHFKPSP_ 0 0 0 MAP9|p.D594Rfs*2|1|0.11|ENSG00000164114|chr4:155352637-155352638|-/T|frameshift_variant;ENSG00000164114|ENST00000311277|MAP9;MAP9|p.K567Rfs*13|5|0.22|ENSG00000164114|chr4:155352717-155352717|T/-|frameshift_variant;nc|ENSG00000164114|Q49MG5-2|MAP9 MAP9|p.D594Rfs*2|1|0.11|ENSG00000164114|chr4:155352637-155352638|-/T|frameshift_variant MAP9|p.D594Rfs*2|1|0.11|ENSG00000164114|chr4:155352637-155352638|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2703857421875 2 522.243264 1042.47197 NaN NaN NaN NaN NaN NaN NaN 135.5 1 130.86 130.36 131.36 -4.6399 0 0 0 0.19162 1 26726 26726 0.37959 0.17226 1 44780 5510 29787 29807 44071 44071 -0.04756297350195382 TDDKNILT 8 Unmodified _TDDKNILT_ 0 0 0 MIA3|p.N374T|1|0.06|ENSG00000154305|chr1:222628341-222628341|A/C|missense_variant MIA3|p.N374T|1|0.06|ENSG00000154305|chr1:222628341-222628341|A/C|missense_variant MIA3|p.N374T|1|0.06|ENSG00000154305|chr1:222628341-222628341|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23358154296875 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 75 1 71.277 70.777 71.777 -3.7227 0 0 0 0.22757 1 14180 14180 0.68139 0.27313 1 44781 12145 29788 29808 44072 44072 0.0033318441828669165 TDDKRTAI 8 Unmodified _TDDKRTAI_ 0 0 0 REV__ANK2|p.A200T|1|0.36|ENSG00000145362|chr4:113237101-113237101|G/A|missense_variant REV__ANK2|p.A200T|1|0.36|ENSG00000145362|chr4:113237101-113237101|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2440185546875 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 96.421 1 92.501 92.001 93.001 -3.9194 0 0 0 0.21486 1 18502 18502 11.64 0 1 + 44782 13044 29789 29809 44073 44073 0.01456006512410113 TDDKTIVKF 9 Unmodified _TDDKTIVKF_ 0 0 0 REV__ENSG00000100558|ENST00000216446|PLEK2 REV__ENSG00000100558|ENST00000216446|PLEK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.0863037109375 3 356.197485 1065.57063 -0.39463 -0.00014057 0.40587 0.00014457 0.011236 4.0023E-06 356.19753670290015 72.392 0.85551 69.082 68.67 69.526 -3.3107 78 23 4 0 0 0 0.8319 1 14060 14060 8.1555 0 1 24396000 + 44783 14720 29790 29810 44074 44074 0.04046305894848956 TDDKTIVKF 9 Unmodified _TDDKTIVKF_ 0 0 0 REV__ENSG00000100558|ENST00000216446|PLEK2 REV__ENSG00000100558|ENST00000216446|PLEK2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 356.197485 1065.57063 -0.5345 -0.00019039 0.52849 0.00018825 -0.0060112 -2.1412E-06 356.1975734761049 69.4 0.98888 69.4 68.788 69.777 0 0.15917 5.5706E-05 NaN 8.1555 70 27 4 NaN NaN NaN NaN 0 NaN NaN 0 28469000 + 44784 14720 29790 29810 0.04046305894848956 TDDKYWTVEPE 11 Unmodified _TDDKYWTVEPE_ 0 0 0 REV__ENSG00000136383|ENST00000258888|ALPK3 REV__ENSG00000136383|ENST00000258888|ALPK3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5415344238281 3 461.541869 1381.60378 NaN NaN NaN NaN NaN NaN NaN 75.823 1 72.101 71.601 72.601 -3.7227 0 0 0 0.23103 1 14346 14346 7.4771 0 1 + 44785 16328 29791 29811 44075 44075 -0.07176156843775061 TDDPPTTK 8 Unmodified _TDDPPTTK_ 0 0 0 ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF;ENSG00000184752|ENST00000327772|NDUFA12 ENST00000538372.6_1_12:95365218-95388109:-|nuORF ENST00000538372.6_1_12:95365218-95388109:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2170715332031 2 437.711265 873.407977 0.37969 0.00016619 -0.2059 -9.0125E-05 0.17379 7.6069E-05 437.711146302212 49.936 0.65238 49.936 49.547 50.2 0 31 18 2 0 0 0 0.96284 1 9422 9422 8.5933 0 1 768180 44786 6934 29792 29812 44076 44076 -0.03379077507145212 TDDPRKLAQ 9 Unmodified _TDDPRKLAQ_ 0 0 0 REV__ENST00000475971.5_1_7:893033-912965:+|nuORF REV__ENST00000475971.5_1_7:893033-912965:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2780151367188 2 522.277638 1042.54072 0.43878 0.00022917 -0.52904 -0.0002763 -0.090258 -4.714E-05 522.2775426432585 49.501 0.45409 49.501 49.232 49.686 0 18 12 2 0 0 0 0.65387 1 9381 9381 9.3831 0.78985 1 1006300 + 44787 17715 29793 29813 44077 44077 0.021153669495106442 TDDRARQYG 9 Unmodified _TDDRARQYG_ 0 0 0 REV__ENSG00000179041|ENST00000320270|RRS1 REV__ENSG00000179041|ENST00000320270|RRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2658081054688 2 541.254694 1080.49483 0.10089 5.4609E-05 -2.1548 -0.0011663 -2.0539 -0.0011117 541.7546124152707 51.364 1.6466 48.319 47.53 49.177 -3.0453 78 46 3 0 0 0 0.48644 1 9360 9360 20.454 9.6297 1 1933800 + 44788 18633 29794 29814 44078 44078 -0.0421927823272199 TDDRARQYG 9 Unmodified _TDDRARQYG_ 0 0 0 REV__ENSG00000179041|ENST00000320270|RRS1 REV__ENSG00000179041|ENST00000320270|RRS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2703857421875 2 541.254694 1080.49483 0.10089 5.4609E-05 -2.1548 -0.0011663 -2.0539 -0.0011117 541.7546124152707 51.364 1.6466 48.319 47.53 49.177 -3.0453 78 46 3 0 0 0 0.74655 1 9464 9464 6.7232 0 1 1933800 + 44789 18633 29794 29814 44079 44079 -0.0421927823272199 TDDSCFDPY 9 Unmodified _TDDSCFDPY_ 0 0 0 ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-11|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF;ENST00000480024.1_1_2:216232580-216235161:-|nuORF ENSG00000115414|ENST00000354785|FN1 ENSG00000115414|ENST00000354785|FN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 354.487548828125 3 354.79554 1061.36479 0.084029 2.9813E-05 0.46896 0.00016638 0.55299 0.0001962 354.795679164621 78.058 0.69875 78.058 77.737 78.436 0 45 19 3 0 0 0 0.64023 1 15252 15252 1.2148 0.80657 1 5540100 44790 2853 29795 29815 44080 44080 -0.16343635346720475 TDDSRTGLP 9 Unmodified _TDDSRTGLP_ 0 0 0 REV__GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant REV__GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.232666015625 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 38.308 1 35.84 35.34 36.34 -2.4688 0 0 0 0.10094 1 7095 7095 38.176 0.20157 1 + 44791 18959 29796 29816 44081 44081 -0.030568877298492225 TDDSRTGLP 9 Unmodified _TDDSRTGLP_ 0 0 0 REV__GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant REV__GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2330627441406 2 481.232896 960.451239 0.089284 4.2967E-05 -0.10273 -4.9435E-05 -0.013442 -6.4687E-06 481.2330550048895 38.186 0.95617 35.744 35.38 36.336 -2.4419 37 26 2 0 0 0 0.25183 1 6792 6792 34.402 3.1334 1 1487200 + 44792 18959 29796 29816 44082 44082 -0.030568877298492225 TDDSRTGLP 9 Unmodified _TDDSRTGLP_ 0 0 0 REV__GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant REV__GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2546081542969 2 481.232896 960.451239 0.12747 6.1343E-05 -0.012197 -5.8698E-06 0.11527 5.5473E-05 481.2331582178105 38.155 0.79995 35.75 35.569 36.369 -2.4049 36 22 2 0 0 0 0.19171 3 6796 6761;6773;6796 38.176 9.094 1 1740400 + 44793 18959 29796 29816 44083;44084;44085 44085 -0.030568877298492225 TDDYEDEYY 9 Unmodified _TDDYEDEYY_ 0 0 0 REV__ASCC2|p.R715Efs*40|1|0.04|ENSG00000100325|chr22:29789144-29789144|G/-|frameshift_variant REV__ASCC2|p.R715Efs*40|1|0.04|ENSG00000100325|chr22:29789144-29789144|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 606.7122192382812 2 606.714398 1211.41424 NaN NaN NaN NaN NaN NaN NaN 179.22 1 179.22 178.72 179.72 0 0 0 0 0.19626 1 37125 37125 0.0033805 0.0019993 1 + 44794 13130 29797 29817 44086 44086 -0.18300648856939006 TDEARGPVA 9 Unmodified _TDEARGPVA_ 0 0 0 REV__ENSG00000173905|ENST00000470487|GOLIM4 REV__ENSG00000173905|ENST00000470487|GOLIM4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23028564453125 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 32.705 1 32.705 32.205 33.205 0 0 0 0 0.23508 1 5949 5949 13.042 0.51092 1 + 44795 18382 29798 29818 44087 44087 -0.0148856652166387 TDEDIKKA 8 Unmodified _TDEDIKKA_ 0 0 0 tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.239013671875 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 74.25 1 70.885 70.385 71.385 -3.3643 0 0 0 0.21486 1 14485 14485 12.532 0 1 44796 26071 29799 29819 44088 44088 0.0033318441827532297 TDEDLSLVA 9 Unmodified _TDEDLSLVA_ 0 0 0 REV__ENSG00000182197|ENST00000378204|EXT1 REV__ENSG00000182197|ENST00000378204|EXT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7707214355469 2 481.73748 961.460406 0.3896 0.00018768 1.861 0.00089651 2.2506 0.0010842 481.7383824866358 29.446 0.31236 27.371 27.17 27.483 -2.0743 14 8 2 0 0 0 0.46541 1 4981 4981 21.747 3.6003 1 306560 + 44797 18765 29800 29820 44089 44089 -0.021865391641881615 TDEEDRCL 8 Unmodified _TDEEDRCL_ 0 0 0 REV__ENSG00000136560|ENST00000392749|TANK REV__ENSG00000136560|ENST00000392749|TANK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2568664550781 2 490.703114 979.391675 0.2675 0.00013126 -1.6155 -0.00079275 -1.348 -0.00066149 490.7022288068745 74.232 0.48258 70.556 70.45 70.933 -3.6764 23 13 2 0 0 0 0.89552 1 14065 14065 13.508 0 1 1967500 + 44798 16341 29801 29821 44090 44090 -0.09884526735538657 TDEEEHGNI 9 Unmodified _TDEEEHGNI_ 0 0 0 ENSG00000185798|ENST00000332629|WDR53 ENSG00000185798|ENST00000332629|WDR53 ENSG00000185798|ENST00000332629|WDR53 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2635498046875 2 522.217443 1042.42033 -0.082765 -4.3221E-05 0.24106 0.00012588 0.15829 8.2663E-05 522.2176631376233 79.932 0.51721 76.256 76.077 76.594 -3.676 20 14 2 0 0 0 0.84208 1 15273 15273 3.9444 0 1 1061400 44799 7013 29802 29822 44091 44091 -0.09918085834760859 TDEEEKDP 8 Unmodified _TDEEEKDP_ 0 0 0 REV__nc|ENSG00000198881|Q8WXK4|ASB12 REV__nc|ENSG00000198881|Q8WXK4|ASB12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2355651855469 2 481.701094 961.387635 0.028736 1.3842E-05 0.8056 0.00038806 0.83434 0.0004019 481.7014061517284 23.32 1.0053 23.32 23.026 24.032 0 39 28 2 0 0 0 0.93477 1 4036 4036 12.532 0 1 653810 + 44800 19472 29803 29823 44092 44092 -0.09460292957601268 TDEEGKFRL 9 Unmodified _TDEEGKFRL_ 0 0 0 NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000572932.1_1_16:16374097-16382502:+|nuORF NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7764892578125 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 140.09 1 140.09 139.59 140.59 0 0 0 0 0.22621 1 27872 27872 15.847 5.7733 1 44801 2176 29804 29824 44093 44093 -0.0026405277030789875 TDEEIVECWH 10 Unmodified _TDEEIVECWH_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;ENST00000471834.1_1_6:152690575-152702320:-|nuORF;nc|ENSG00000131018|Q8NF91-12|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7661743164062 2 630.763703 1259.51285 NaN NaN NaN NaN NaN NaN NaN 28.465 1 26.71 26.21 27.21 -1.7552 0 0 0 0.22576 1 4805 4805 14.838 0 1 44802 3655 29805 29825 44094 44094 -0.1065232409289365 TDEERLAE 8 Unmodified _TDEERLAE_ 0 0 0 nc|ENSG00000101246|Q13795-4|ARFRP1;ENST00000609537.5_1_20:62333085-62338084:-|nuORF;nc|ENSG00000101246|Q13795-3|ARFRP1;nc|ENSG00000101246|Q13795-2|ARFRP1;ENSG00000101246|ENST00000622789|ARFRP1 nc|ENSG00000101246|Q13795-4|ARFRP1 nc|ENSG00000101246|Q13795-4|ARFRP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2423400878906 2 481.724904 961.435254 0.016484 7.9406E-06 -1.584 -0.00076304 -1.5675 -0.0007551 481.7242212623121 22.571 0.60043 22.571 22.223 22.823 0 21 16 2 0 0 0 0.67743 1 3862 3862 3.5871 0 1 724320 44803 2051 29806 29826 44095 44095 -0.047005939667656094 TDEGLKQLG 9 Unmodified _TDEGLKQLG_ 0 0 0 FBXL17|p.C627*|1|0.1|ENSG00000145743|chr5:107881121-107881121|A/-|frameshift_variant;ENSG00000145743|ENST00000542267|FBXL17;nc|ENSG00000145743|Q9UF56-3|FBXL17;nc|ENSG00000145743|Q9UF56-2|FBXL17 FBXL17|p.C627*|1|0.1|ENSG00000145743|chr5:107881121-107881121|A/-|frameshift_variant FBXL17|p.C627*|1|0.1|ENSG00000145743|chr5:107881121-107881121|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24151611328125 2 480.753464 959.492375 0.18943 9.107E-05 0.050473 2.4265E-05 0.2399 0.00011533 480.7533866743533 41.966 0.49384 41.966 41.689 42.183 0 19 13 2 0 0 0 0.5059 1 7856 7856 19.257 0 1 1774300 44804 4619 29807 29827 44096 44096 0.011008733096332435 TDEGYLQHR 9 Unmodified _TDEGYLQHR_ 0 0 0 ENST00000578926.1_1_7:86811567-86815316:+|nuORF ENST00000578926.1_1_7:86811567-86815316:+|nuORF ENST00000578926.1_1_7:86811567-86815316:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.11468505859375 3 373.512355 1117.51524 -0.47346 -0.00017684 2.5858 0.00096583 2.1123 0.00078898 373.84692963627856 59.414 0.64194 59.414 59.108 59.75 0 52 17 4 0 0 0 0.88054 1 11350 11350 0.86438 0.68287 1 4702000 44805 11478 29808 29828 44097 44097 -0.03882107572917448 TDEITKNV 8 Unmodified _TDEITKNV_ 0 0 0 REV__nc|ENSG00000164144|P53367-3|ARFIP1 REV__nc|ENSG00000164144|P53367-3|ARFIP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2392578125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 74.034 1 70.67 70.17 71.17 -3.3643 0 0 0 0.21452 1 14439 14439 13.508 0 1 + 44806 13093 29809 29829 44098 44098 0.0033318441828669165 TDELKARF 8 Unmodified _TDELKARF_ 0 0 0 tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1 tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1 tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2677307128906 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 50.913 1 47.868 47.368 48.368 -3.0453 0 0 0 0.22934 1 9337 9337 0.68139 0.42991 1 44807 26442 29810 29830 44099 44099 0.023328834091330464 TDENIMTR 8 Unmodified _TDENIMTR_ 0 0 0 SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant;ENSG00000177409|ENST00000318238|SAMD9L SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant SAMD9L|p.N1174Tfs*28|1|0.24|ENSG00000177409|chr7:93132451-93132451|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2540283203125 2 490.229299 978.444045 0.16568 8.1221E-05 -1.3228 -0.00064846 -1.1571 -0.00056724 490.22849255440644 56.82 0.62524 53.63 53.336 53.962 -3.1895 22 17 2 0 0 0 0.71876 1 10594 10594 11.64 0 1 1255500 44808 6509 29811 29831 44100 44100 -0.04603943601910032 TDERLNWIYY 10 Unmodified _TDERLNWIYY_ 0 0 0 ENSG00000102104|ENST00000379984|RS1 ENSG00000102104|ENST00000379984|RS1 ENSG00000102104|ENST00000379984|RS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2293701171875 3 458.222582 1371.64592 NaN NaN NaN NaN NaN NaN NaN 83.322 1 79.448 78.948 79.948 -3.8736 0 0 0 2.8426 1 15826 15826 0.013265 0 1 44809 2109 29812 29832 44101 44101 -0.025041366447112523 TDFGPSTRY 9 Unmodified _TDFGPSTRY_ 0 0 0 ENSG00000109182|ENST00000226432|CWH43 ENSG00000109182|ENST00000226432|CWH43 ENSG00000109182|ENST00000226432|CWH43 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2797241210938 2 522.243264 1042.47197 NaN NaN NaN NaN NaN NaN NaN 63.632 1 63.632 63.132 64.132 0 0 0 0 0.23508 1 12238 12238 10.074 0 1 44810 2521 29813 29833 44102 44102 -0.04756297350195382 TDFHRCIYNCY 11 Unmodified _TDFHRCIYNCY_ 0 0 0 ENST00000443765.5_2_13:37569680-37573477:-|nuORF ENST00000443765.5_2_13:37569680-37573477:-|nuORF ENST00000443765.5_2_13:37569680-37573477:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7211608886719 3 478.869157 1433.58564 NaN NaN NaN NaN NaN NaN NaN 18.137 1 16.826 16.326 17.326 -1.3109 0 0 0 0.23698 1 2938 2938 1.3296 0.11481 1 44811 9916 29814 29834 44103 44103 -0.11380893571072193 TDFHRCIYNCY 11 Unmodified _TDFHRCIYNCY_ 0 0 0 ENST00000443765.5_2_13:37569680-37573477:-|nuORF ENST00000443765.5_2_13:37569680-37573477:-|nuORF ENST00000443765.5_2_13:37569680-37573477:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7423400878906 3 478.869157 1433.58564 NaN NaN NaN NaN NaN NaN NaN 19.305 1 17.67 17.17 18.17 -1.6351 0 0 0 0.23698 1 2905 2905 1.3296 0 1 44812 9916 29814 29834 44104 44104 -0.11380893571072193 TDFNRKYLQRQ 11 Unmodified _TDFNRKYLQRQ_ 0 0 0 REV__ENST00000510666.1_1_5:68840710-68849495:+|nuORF REV__ENST00000510666.1_1_5:68840710-68849495:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2590637207031 3 490.26003 1467.75826 NaN NaN NaN NaN NaN NaN NaN 46.056 1 43.19 42.69 43.69 -2.8666 0 0 0 0.22632 1 8375 8375 1.4551 1.4546 1 + 44813 19365 29815 29835 44105 44105 0.04309137152108633 TDFPAGKGY 9 Unmodified _TDFPAGKGY_ 0 0 0 nc|ENSG00000113761|Q9UL40-3|ZNF346;ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346 nc|ENSG00000113761|Q9UL40-3|ZNF346 nc|ENSG00000113761|Q9UL40-3|ZNF346 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7235412597656 2 478.229625 954.444697 -0.0053045 -2.5368E-06 0.26297 0.00012576 0.25767 0.00012322 478.2296431906772 81.116 0.73647 77.277 76.942 77.678 -3.8392 31 20 2 0 0 0 0.58699 1 15354 15354 25.399 25.399 1 1858900 44814 2762 29816 29836 44106 44106 -0.03434780890563616 TDFPAGKGY 9 Unmodified _TDFPAGKGY_ 0 0 0 nc|ENSG00000113761|Q9UL40-3|ZNF346;ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346 nc|ENSG00000113761|Q9UL40-3|ZNF346 nc|ENSG00000113761|Q9UL40-3|ZNF346 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.229625 954.444697 0.023095 1.1045E-05 0.18697 8.9413E-05 0.21006 0.00010046 478.2295757147646 80.925 0.77003 77.368 76.885 77.655 -3.557 0.060334 3.5036E-05 NaN 25.399 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1358100 44815 2762 29816 29836 -0.03434780890563616 TDFPAGKGY 9 Unmodified _TDFPAGKGY_ 0 0 0 nc|ENSG00000113761|Q9UL40-3|ZNF346;ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346 nc|ENSG00000113761|Q9UL40-3|ZNF346 nc|ENSG00000113761|Q9UL40-3|ZNF346 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.229625 954.444697 -0.19551 -9.35E-05 0.23842 0.00011402 0.042905 2.0519E-05 478.2296538641055 80.986 0.86939 77.298 76.827 77.696 -3.6879 -0.009475 8.4249E-05 NaN 25.399 32 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2209200 44816 2762 29816 29836 -0.03434780890563616 TDFQTRSRL 9 Unmodified _TDFQTRSRL_ 0 0 0 ENSG00000235034|ENST00000425202|C19orf81 ENSG00000235034|ENST00000425202|C19orf81 ENSG00000235034|ENST00000425202|C19orf81 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21673583984375 3 375.2 1122.57817 NaN NaN NaN NaN NaN NaN NaN 100.03 1 100.03 99.528 100.53 0 0 0 0 0.19654 1 19621 19621 0.073264 0.059998 1 44817 7820 29817 29837 44107 44107 0.021784582151667564 TDGALSHSK 9 Unmodified _TDGALSHSK_ 0 0 0 REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2292175292969 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 132.83 1 132.83 132.33 133.33 0 0 0 0 0.18755 1 26266 26266 0.12781 0 1 + 44818 21235 29818 29838 44108 44108 -0.0148856652166387 TDGDESEEDP 10 Unmodified _TDGDESEEDP_ 0 0 0 TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant;ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1 TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7760620117188 2 547.19383 1092.37311 0.32763 0.00017928 -0.50552 -0.00027662 -0.17789 -9.7341E-05 547.19342784182 21.7 0.38093 21.7 21.528 21.909 0 23 10 3 0 0 0 0.871 1 3647 3647 1.3295 0 1 1523600 44819 4095 29819 29839 44109 44109 -0.16938409896397388 TDGELLRRY 9 Unmodified _TDGELLRRY_ 0 0 0 REV__CON__Q99PS0 REV__CON__Q99PS0 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2043151855469 3 374.86825 1121.58292 -0.25135 -9.4222E-05 0.19202 7.1981E-05 -0.05933 -2.2241E-05 374.86836007592785 32.88 0.42287 30.664 30.316 30.739 -2.2158 15 11 2 0 0 0 0.84582 1 5659 5659 4.897 0 1 451100 + + 44820 13559 29820 29840 44110 44110 0.026993423579142473 TDGELLRRY 9 Unmodified _TDGELLRRY_ 0 0 0 REV__CON__Q99PS0 REV__CON__Q99PS0 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 374.86825 1121.58292 0.25152 9.4286E-05 -1.3125 -0.00049203 -1.061 -0.00039774 374.8678275190524 32.692 0.37941 30.546 30.38 30.759 -2.1468 -0.059241 -0.0014851 NaN 4.897 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 766260 + + 44821 13559 29820 29840 0.026993423579142473 TDGFVTMC 8 Unmodified _TDGFVTMC_ 0 0 0 REV__DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant REV__DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23614501953125 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 77.622 1 73.963 73.463 74.463 -3.6588 0 0 0 0.21486 1 14781 14781 8.5933 2.2392 1 + 44822 13731 29821 29841 44111 44111 -0.10045147314099268 TDGGRYDVY 9 Unmodified _TDGGRYDVY_ 0 0 0 nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6944580078125 2 523.232896 1044.45124 NaN NaN NaN NaN NaN NaN NaN 48.228 1 45.286 44.786 45.786 -2.9421 0 0 0 0.20699 1 8802 8802 21.537 8.0291 1 44823 2433 29822 29842 44112 44112 -0.06920887729847891 TDGHLVVAPA 10 Unmodified _TDGHLVVAPA_ 0 0 0 REV__nc|ENSG00000005961|P08514-3|ITGA2B REV__nc|ENSG00000005961|P08514-3|ITGA2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2644348144531 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 58.626 1 58.626 58.126 59.126 0 0 0 0 0.22576 1 11223 11223 14.838 0.25658 1 + 44824 13866 29823 29843 44113 44113 0.023328834091330464 TDGKKSYY 8 Unmodified _TDGKKSYY_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2350769042969 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 18.247 1 16.975 16.475 17.475 -1.2722 0 0 0 0.21452 1 2727 2727 13.508 4.9146 1 44825 3641 29824 29844 44114 44114 -0.02654798236142142 TDGLHRGQY 9 Unmodified _TDGLHRGQY_ 0 0 0 REV__nc|ENSG00000148082|Q92529-2|SHC3 REV__nc|ENSG00000148082|Q92529-2|SHC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6768798828125 2 523.75433 1045.49411 NaN NaN NaN NaN NaN NaN NaN 63.354 1 60.097 59.597 60.597 -3.2567 0 0 0 0.23508 1 11887 11887 10.824 2.0785 1 + 44826 16960 29825 29845 44115 44115 -0.02682072881748354 TDGLTFSCI 9 Unmodified _TDGLTFSCI_ 0 0 0 REV__VN1R2|p.S106Hfs*21|1|0.32|ENSG00000196131|chr19:53258687-53258687|T/-|frameshift_variant REV__VN1R2|p.S106Hfs*21|1|0.32|ENSG00000196131|chr19:53258687-53258687|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7241516113281 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 100.52 1 100.52 100.02 101.02 0 0 0 0 0.23508 1 19722 19722 12.532 0 1 + 44827 25535 29826 29846 44116 44116 -0.04741560345121343 TDGNFCNC 8 Unmodified _TDGNFCNC_ 0 0 0 REV__nc|ENSG00000133740|Q15329-3|E2F5 REV__nc|ENSG00000133740|Q15329-3|E2F5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2316589355469 2 437.14692 872.279288 NaN NaN NaN NaN NaN NaN NaN 15.258 1 14.144 13.644 14.644 -1.1142 0 0 0 0.21486 1 2341 2341 2.5775 1.7838 1 + 44828 16176 29827 29847 44117 44117 -0.16196079013388953 TDGPPHHL 8 Unmodified _TDGPPHHL_ 0 0 0 REV__ENST00000462794.1_1_22:36912452-36912849:-|nuORF REV__ENST00000462794.1_1_22:36912452-36912849:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2162170410156 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 100.7 1 96.537 96.037 97.037 -4.1594 0 0 0 0.21486 1 19793 19793 9.3474 0 1 + 44829 21912 29828 29848 44118 44118 -0.027245144849530334 TDGSVLAVGT 10 Unmodified _TDGSVLAVGT_ 0 0 0 WSB1|p.A368V|1|0.28|ENSG00000109046|chr17:27311613-27311613|C/T|missense_variant WSB1|p.A368V|1|0.28|ENSG00000109046|chr17:27311613-27311613|C/T|missense_variant WSB1|p.A368V|1|0.28|ENSG00000109046|chr17:27311613-27311613|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2399597167969 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 92.248 1 88.153 87.653 88.653 -4.0946 0 0 0 2.8426 1 17572 17572 0.20733 0.079513 1 44830 26582 29829 29849 44119 44119 0.0033318441828669165 TDGTKLEKLF 10 Unmodified _TDGTKLEKLF_ 0 0 0 ENSG00000158023|ENST00000288912|CFAP251;nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENST00000535257.1_1_12:122391860-122397069:+|nuORF ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3338012695312 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 73.656 1 70.062 69.562 70.562 -3.594 0 0 0 0.22576 1 13980 13980 14.838 0.93222 1 44831 5147 29830 29850 44120 44120 0.05410263957674033 TDGWIDYQP 9 Unmodified _TDGWIDYQP_ 0 0 0 REV__ADCY6|p.N1109D|1|0.11|ENSG00000174233|chr12:48768993-48768993|T/C|missense_variant REV__ADCY6|p.N1109D|1|0.11|ENSG00000174233|chr12:48768993-48768993|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7681884765625 2 547.743096 1093.47164 NaN NaN NaN NaN NaN NaN NaN 82.985 1 79.287 78.787 79.787 -3.6985 0 0 0 0.22251 1 15833 15833 16.942 6.1184 1 + 44832 12957 29831 29851 44121 44121 -0.07135717070036662 TDGWLPVQ 8 Unmodified _TDGWLPVQ_ 0 0 0 REV__ENST00000322088.10_1_19:52729261-52729453:+|nuORF REV__ENST00000322088.10_1_19:52729261-52729453:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2322692871094 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 28.243 1 26.487 25.987 26.987 -1.7552 0 0 0 0.22684 1 4761 4761 0.62683 0 1 + 44833 20557 29832 29852 44122 44122 -0.010864770279567892 TDHGKGRH 8 Unmodified _TDHGKGRH_ 0 0 0 REV__ENST00000502665.1_1_4:187126176-187131792:+|nuORF REV__ENST00000502665.1_1_4:187126176-187131792:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7680969238281 2 454.228282 906.442011 0.30627 0.00013912 0.037952 1.7239E-05 0.34422 0.00015635 454.22952309104204 34.916 1.9189 32.64 31.258 33.177 -2.2766 85 54 3 0 0 0 0.95284 1 6013 6013 9.3474 0 1 3796200 + 44834 22443 29833 29853 44123 44123 -0.01495191504864124 TDIALNNL 8 Unmodified _TDIALNNL_ 0 0 0 nc|ENSG00000165164|Q6ZTR5-6|CFAP47;CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant;CFAP47|p.H2345Afs*15|1|0.09|ENSG00000165164|chrX:36236809-36236810|-/A|frameshift_variant;ENSG00000165164|ENST00000378653|CFAP47;CFAP47|p.K734Nfs*6|1|0.13|ENSG00000165164|chrX:35971909-35971909|A/-|frameshift_variant;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;CFAP47|p.F1567Vfs*4|1|0.31|ENSG00000165164|chrX:36098829-36098830|-/G|frameshift_variant;CFAP47|p.G416Efs*26|1|0.04|ENSG00000165164|chrX:35956032-35956033|-/AATATATTTGCTTA|frameshift_variant nc|ENSG00000165164|Q6ZTR5-6|CFAP47 nc|ENSG00000165164|Q6ZTR5-6|CFAP47 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2356872558594 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 71.172 1 67.705 67.205 68.205 -3.467 0 0 0 0.21486 1 13486 13486 9.3474 0 1 44835 12428 29834 29854 44124 44124 0.019015056264720442 TDIELRLRA 9 Unmodified _TDIELRLRA_ 0 0 0 REV__ENST00000434304.2_1_22:17154630-17158220:-|nuORF REV__ENST00000434304.2_1_22:17154630-17158220:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.781982421875 2 543.81693 1085.61931 NaN NaN NaN NaN NaN NaN NaN 128.99 1 128.99 128.49 129.49 0 0 0 0 0.23508 1 25475 25475 11.64 0.81637 1 + 44836 13066 29835 29855 44125 44125 0.07992219254606425 TDIQNKLYA 9 Unmodified _TDIQNKLYA_ 0 0 0 ACTRT1|p.L307Pfs*9|1|0.17|ENSG00000123165|chrX:128051287-128051287|A/-|frameshift_variant;ENSG00000123165|ENST00000371124|ACTRT1 ACTRT1|p.L307Pfs*9|1|0.17|ENSG00000123165|chrX:128051287-128051287|A/-|frameshift_variant ACTRT1|p.L307Pfs*9|1|0.17|ENSG00000123165|chrX:128051287-128051287|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2825317382812 2 533.282389 1064.55022 0.54775 0.0002921 -0.43132 -0.00023001 0.11643 6.209E-05 533.2820457707753 94.681 1.0863 90.49 89.842 90.928 -4.1911 92 30 4 0 0 0 0.40602 1 18148 18148 25.399 0.40835 1 34282000 44837 46 29836 29856 44126 44126 0.02053135235018999 TDISNYKLI 9 Unmodified _TDISNYKLI_ 0 0 0 tr|U7SJA5|U7SJA5_FUSNUCRISPR-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02170PE=4SV=1 tr|U7SJA5|U7SJA5_FUSNUCRISPR-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02170PE=4SV=1 tr|U7SJA5|U7SJA5_FUSNUCRISPR-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02170PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2868041992188 2 533.792589 1065.57063 0.24992 0.00013341 -0.17986 -9.6005E-05 0.070064 3.74E-05 533.7924358023189 124.19 0.63691 119.62 119.27 119.91 -4.5757 30 17 2 0 0 0 0.81703 1 24465 24465 3.2813 0 1 1939300 44838 25938 29837 29857 44127 44127 0.04046305894848956 TDIVDSAQI 9 Unmodified _TDIVDSAQI_ 0 0 0 REV__ENST00000425406.5_1_7:86817376-86824453:+|nuORF REV__ENST00000425406.5_1_7:86817376-86824453:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2547302246094 2 481.245472 960.476391 -0.039409 -1.8965E-05 0.02721 1.3095E-05 -0.012199 -5.8708E-06 481.24538744658315 74.415 2.2491 71.051 69.582 71.831 -3.3643 164 63 7 0 0 0 0.22334 2 14420 14369;14420 36.044 3.9272 1 81098000 + 44839 16249 29838 29858 44128;44129 44129 -0.0054283292729451205 TDIVVDHYK 9 Unmodified _TDIVVDHYK_ 0 0 0 nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.78955078125 2 545.282389 1088.55022 0.28908 0.00015763 -0.55516 -0.00030272 -0.26608 -0.00014509 545.2820463941205 86.477 1.4464 82.527 82.012 83.458 -3.9503 136 40 7 0 0 0 0.6329 1 16475 16475 10.824 0.75 1 223190000 44840 3439 29839 29859 44130 44130 0.009491352350323723 TDIYGRLAA 9 Unmodified _TDIYGRLAA_ 0 0 0 ENSG00000160959|ENST00000292524|LRRC14 ENSG00000160959|ENST00000292524|LRRC14 ENSG00000160959|ENST00000292524|LRRC14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2632751464844 2 490.263999 978.513445 -0.13005 -6.3758E-05 0.0030815 1.5107E-06 -0.12697 -6.2248E-05 490.26381972535773 64.046 0.41918 64.046 63.852 64.271 0 25 11 3 0 0 0 0.39168 1 12356 12356 0.87518 0 1 5356300 44841 5277 29840 29860 44131 44131 0.023328834091330464 TDKAKQLI 8 Unmodified _TDKAKQLI_ 0 0 0 REV__nc|ENSG00000107186|O75970-5|MPDZ REV__nc|ENSG00000107186|O75970-5|MPDZ MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2306213378906 2 458.776742 915.538931 -0.68558 -0.00031453 1.612 0.00073953 0.92638 0.000425 458.77700830202303 21.656 0.30521 19.935 19.815 20.121 -1.7211 12 8 2 0 0 0 0.86877 1 3436 3436 0.25148 0 1 232450 + 44842 15077 29841 29861 44132 44132 0.07778357931567825 TDKERYENEER 11 Unmodified _TDKERYENEER_ 0 0 0 nc|ENSG00000102383|Q96MV8-3|ZDHHC15;ENSG00000102383|ENST00000373367|ZDHHC15;nc|ENSG00000102383|Q96MV8-2|ZDHHC15 nc|ENSG00000102383|Q96MV8-3|ZDHHC15 nc|ENSG00000102383|Q96MV8-3|ZDHHC15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2699279785156 3 490.226943 1467.659 NaN NaN NaN NaN NaN NaN NaN 152.34 1 147.16 146.66 147.66 -5.1759 0 0 0 0.22632 1 29524 29524 1.4551 0.8698 1 44843 2129 29842 29862 44133 44133 -0.056123503232811345 TDKFNGSKF 9 Unmodified _TDKFNGSKF_ 0 0 0 REV__ENST00000469266.1_1_3:146246374-146246461:-|nuORF REV__ENST00000469266.1_1_3:146246374-146246461:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2632446289062 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 85.041 1 81.329 80.829 81.829 -3.7117 0 0 0 0.18064 1 16246 16246 26.268 4.5215 1 + 44844 22007 29843 29863 44134 44134 -0.011194204534604069 TDKLCKHA 8 Unmodified _TDKLCKHA_ 0 0 0 REV__ENST00000333188.9_1_3:139096938-139097891:-|nuORF REV__ENST00000333188.9_1_3:139096938-139097891:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2387390136719 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 81.204 1 77.647 77.147 78.147 -3.557 0 0 0 0.21486 1 15855 15855 11.64 0 1 + 44845 20638 29844 29864 44135 44135 0.003732718485366604 TDKLERKH 8 Unmodified _TDKLERKH_ 0 0 0 NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.03143310546875 3 342.861207 1025.56179 -0.18171 -6.23E-05 0.24283 8.3256E-05 0.061121 2.0956E-05 342.86122781738965 31.262 0.42086 29.113 28.917 29.338 -2.1483 17 11 2 0 0 0 0.86089 1 5374 5374 1.6526 0 1 604520 44846 5523 29845 29865 44136 44136 0.05003377049047231 TDKLERKH 8 Unmodified _TDKLERKH_ 0 0 0 NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 342.861207 1025.56179 0.061159 2.0969E-05 -0.09722 -3.3333E-05 -0.036061 -1.2364E-05 342.8610862507851 31.262 0.34869 29.145 28.965 29.313 -2.1167 0.044693 -3.1832E-05 NaN 1.6526 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 732390 44847 5523 29845 29865 0.05003377049047231 TDKLERKH 8 Unmodified _TDKLERKH_ 0 0 0 NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 342.861207 1025.56179 0.30636 0.00010504 -0.37068 -0.00012709 -0.064323 -2.2054E-05 342.8610644023926 31.069 0.38647 29.043 28.845 29.232 -2.0264 -0.057707 -0.00031311 NaN 1.6526 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 711360 44848 5523 29845 29865 0.05003377049047231 TDKLLKVY 8 Unmodified _TDKLLKVY_ 0 0 0 tr|U7STA7|U7STA7_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00988PE=4SV=1 tr|U7STA7|U7STA7_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00988PE=4SV=1 tr|U7STA7|U7STA7_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00988PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26513671875 2 490.294768 978.574983 0.22586 0.00011074 0.047249 2.3166E-05 0.27311 0.00013391 490.29477012397916 26.274 0.483 24.639 24.408 24.891 -1.6347 27 13 3 0 0 0 0.99494 1 4385 4385 8.5933 0.68312 1 1482200 44849 26134 29846 29866 44137 44137 0.08483815108422732 TDKLLKVY 8 Unmodified _TDKLLKVY_ 0 0 0 tr|U7STA7|U7STA7_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00988PE=4SV=1 tr|U7STA7|U7STA7_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00988PE=4SV=1 tr|U7STA7|U7STA7_FUSNULipidAbiosynthesislauroylacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00988PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2652587890625 2 490.294768 978.574983 -0.2068 -0.00010139 0.4211 0.00020646 0.21429 0.00010507 490.29493114518107 26.476 0.47394 24.554 24.335 24.808 -1.9222 28 13 3 0 0 0 0.99494 1 4434 4434 8.5933 2.8329 1 1273200 44850 26134 29846 29866 44138 44138 0.08483815108422732 TDKLSFGPP 9 Unmodified _TDKLSFGPP_ 0 0 0 ENST00000514900.5_1_3:129122974-129137267:-|nuORF ENST00000514900.5_1_3:129122974-129137267:-|nuORF ENST00000514900.5_1_3:129122974-129137267:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25421142578125 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 21.044 1 19.569 19.069 20.069 -1.4742 0 0 0 0.23508 1 3542 3542 4.756 0 1 44851 10777 29847 29867 44139 44139 0.00982078660570096 TDKMKEKY 8 Unmodified _TDKMKEKY_ 0 0 0 REV__ENST00000527439.5_1_1:163307827-163315644:+|nuORF REV__ENST00000527439.5_1_1:163307827-163315644:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2667846679688 2 521.765517 1041.51648 -0.103 -5.3741E-05 1.0792 0.00056307 0.97616 0.00050932 521.7655725780784 61.415 0.40697 61.415 61.224 61.631 0 15 11 2 0 0 0 0.76728 1 11747 11747 5.7604 0 1 793510 + 44852 16707 29848 29868 44140 44140 -0.00261609528365625 TDKMKFSH 8 Unmodified _TDKMKFSH_ 0 0 0 REV__ENSG00000101751|ENST00000579534|POLI REV__ENSG00000101751|ENST00000579534|POLI MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.0054931640625 3 331.83226 992.474951 0.64742 0.00021484 -0.84967 -0.00028195 -0.20225 -6.7112E-05 331.8320196416158 24.092 0.31909 22.539 22.355 22.675 -1.5532 17 8 3 0 0 0 1.0243 1 4167 4167 1.6526 0 1 1250200 + 44853 14797 29849 29869 44141 44141 -0.021587454970244835 TDKNGTVNL 9 Unmodified _TDKNGTVNL_ 0 0 0 REV__ENST00000590023.5_1_17:76626114-76626249:-|nuORF REV__ENST00000590023.5_1_17:76626114-76626249:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2535095214844 2 481.251089 960.487624 0.081303 3.9127E-05 2.8034 0.0013491 2.8847 0.0013883 481.25321062497557 96.585 0.96274 92.487 91.944 92.907 -4.0978 57 27 3 0 0 0 0.52396 1 18864 18864 18.146 0.011366 1 3569800 + 44854 23317 29850 29870 44142 44142 0.0057998916687438395 TDKPKPPFL 9 Unmodified _TDKPKPPFL_ 0 0 0 REV__nc|ENSG00000211893|P01859-1|IGHG2 REV__nc|ENSG00000211893|P01859-1|IGHG2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 348.2174987792969 3 348.20257 1041.58588 NaN NaN NaN NaN NaN NaN NaN 78.649 1 74.844 74.344 75.344 -3.8048 0 0 0 0.23508 1 14917 14917 2.9952 0 1 + 44855 24258 29851 29871 44143 44143 0.0667521748271156 TDKPLYTAML 10 Unmodified _TDKPLYTAML_ 0 0 0 REV__nc|ENSG00000173692|Q99460-2|PSMD1 REV__nc|ENSG00000173692|Q99460-2|PSMD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3294677734375 2 576.8021 1151.58965 NaN NaN NaN NaN NaN NaN NaN 30.453 1 28.336 27.836 28.836 -2.1167 0 0 0 0.22583 1 5501 5501 13.906 3.8321 1 + 44856 18368 29852 29872 44144 44144 0.019915191942573074 TDKSGDKIP 9 Unmodified _TDKSGDKIP_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.Q563Hfs*5|1|0.04|ENSG00000167632|chr8:140300548-140300549|-/ATGCATGTGCA|frameshift_variant nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.236572265625 2 480.753464 959.492375 0.30401 0.00014615 -0.69523 -0.00033424 -0.39123 -0.00018808 480.7529714587665 28.519 1.0496 26.764 26.211 27.26 -1.7552 42 29 2 0 0 0 0.57447 1 4775 4775 14.838 0 1 552470 44857 5824 29853 29873 44145 44145 0.011008733096218748 TDKSLHQP 8 Unmodified _TDKSLHQP_ 0 0 0 ENST00000417549.1_1_13:28788954-28789521:+|nuORF ENST00000417549.1_1_13:28788954-28789521:+|nuORF ENST00000417549.1_1_13:28788954-28789521:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 463.14788818359375 2 463.240524 924.466495 0.8402 0.00038921 -0.96564 -0.00044732 -0.12544 -5.8108E-05 463.2401845756844 27.501 0.69757 25.719 25.456 26.153 -1.7821 36 19 3 0 0 0 1.0147 1 4863 4863 5.2307 0 1 1241300 44858 9631 29854 29874 44146 44146 0.0012402385799532567 TDKSMVDKY 9 Unmodified _TDKSMVDKY_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7695922851562 2 543.760432 1085.50631 -0.20688 -0.00011249 0.22738 0.00012364 0.020501 1.1148E-05 543.7605178372783 36.417 0.39043 34.023 33.837 34.228 -2.3938 16 10 2 0 0 0 0.024993 1 6738 6738 87.123 55.086 1 840070 44859 4038 29855 29875 44147 44147 -0.033022172535766 TDKSMVDKY 9 Unmodified _TDKSMVDKY_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7762451171875 2 543.760432 1085.50631 0.36311 0.00019745 -0.30211 -0.00016428 0.060997 3.3168E-05 543.7602721310128 36.347 0.28038 34.07 33.913 34.193 -2.2766 12 7 2 0 0 0 0.12517 1 6428 6428 47.732 20.848 1 815730 44860 4038 29855 29875 44148 44148 -0.033022172535766 TDKSMVDKY 9 Unmodified _TDKSMVDKY_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 543.760432 1085.50631 0.14194 7.7184E-05 -0.27193 -0.00014786 -0.12998 -7.0679E-05 543.7601326560649 36.417 0.41394 34.069 33.863 34.277 -2.3479 0.014858 -0.00020257 NaN 87.123 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 755850 44861 4038 29855 29875 -0.033022172535766 TDKWRVRY 8 Unmodified _TDKWRVRY_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20452880859375 3 375.205085 1122.59343 NaN NaN NaN NaN NaN NaN NaN 36.394 1 36.394 35.894 36.894 0 0 0 0 0.21486 1 6707 6707 6.7232 0 1 44862 7954 29856 29876 44149 44149 0.037033698029972584 TDKWRVRY 8 Unmodified _TDKWRVRY_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2049255371094 3 375.205085 1122.59343 NaN NaN NaN NaN NaN NaN NaN 38.713 1 36.308 35.808 36.808 -2.4049 0 0 0 0.21486 1 6896 6896 7.2892 0 1 44863 7954 29856 29876 44150 44150 0.037033698029972584 TDLAQQQGV 9 Unmodified _TDLAQQQGV_ 0 0 0 KCNA4|p.G429Vfs*53|5|0.21|ENSG00000182255|chr11:30011393-30011393|C/-|frameshift_variant KCNA4|p.G429Vfs*53|5|0.21|ENSG00000182255|chr11:30011393-30011393|C/-|frameshift_variant KCNA4|p.G429Vfs*53|5|0.21|ENSG00000182255|chr11:30011393-30011393|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2454833984375 2 480.243264 958.471974 0.11615 5.578E-05 -0.42101 -0.00020219 -0.30486 -0.00014641 480.2430155524691 32.892 0.69718 30.661 30.259 30.956 -2.2305 59 19 4 0 0 0 0.6329 1 5964 5964 10.824 1.4408 1 10369000 44864 11978 29857 29877 44151 44151 -0.008922973501739762 TDLDIKFQ 8 Unmodified _TDLDIKFQ_ 0 0 0 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2585144042969 2 490.258382 978.502212 -0.12892 -6.3204E-05 0.94463 0.00046311 0.81571 0.00039991 490.2588079783634 63.751 0.45085 63.751 63.401 63.852 0 17 12 2 0 0 0 8448 1 12260 12260 2.643 1.188 1 1786600 44865 2993 29858 29878 44152 44152 0.012100613150096251 TDLEAFAMLA 10 Unmodified _TDLEAFAMLA_ 0 0 0 ENSG00000095464|ENST00000371447|PDE6C ENSG00000095464|ENST00000371447|PDE6C ENSG00000095464|ENST00000371447|PDE6C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2789306640625 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 108.21 1 103.8 103.3 104.3 -4.4121 0 0 0 0.22544 1 20761 20761 19.257 5.3509 1 44866 1860 29859 29879 44153 44153 -0.02089029248213592 TDLEQVPK 8 Unmodified _TDLEQVPK_ 0 0 0 nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54;VPS54|p.L398Ffs*6|1|0.13|ENSG00000143952|chr2:63947434-63947435|-/A|frameshift_variant nc|ENSG00000143952|Q9P1Q0-3|VPS54 nc|ENSG00000143952|Q9P1Q0-3|VPS54 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2499694824219 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 116.28 1 111.7 111.2 112.2 -4.5815 0 0 0 0.21486 1 22314 22314 8.5933 0 1 44867 4533 29860 29880 44154 44154 0.01945774797957256 TDLGLFSVQ 9 Unmodified _TDLGLFSVQ_ 0 0 0 PCDHB1|p.E786Rfs*2|1|0.4|ENSG00000171815|chr5:141053822-141053822|T/-|frameshift_variant;ENSG00000171815|ENST00000306549|PCDHB1 PCDHB1|p.E786Rfs*2|1|0.4|ENSG00000171815|chr5:141053822-141053822|T/-|frameshift_variant PCDHB1|p.E786Rfs*2|1|0.4|ENSG00000171815|chr5:141053822-141053822|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2582702636719 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 112.03 1 112.03 111.53 112.53 0 0 0 0 0.16777 1 22040 22040 8.9129 4.197 1 44868 6176 29861 29881 44155 44155 0.012100613150096251 TDLHFTQRLRL 11 Unmodified _TDLHFTQRLRL_ 0 0 0 REV__nc|ENSG00000177640|Q6XLA1|CASC2 REV__nc|ENSG00000177640|Q6XLA1|CASC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 467.29132080078125 3 467.265004 1398.77318 NaN NaN NaN NaN NaN NaN NaN 121.07 1 116.39 115.89 116.89 -4.6873 0 0 0 0.22632 1 23243 23243 0.172 0 1 + 44869 24187 29862 29882 44156 44156 0.08974629020121938 TDLIYAEKE 9 Unmodified _TDLIYAEKE_ 0 0 0 ENST00000478055.1_1_5:131553347-131562829:-|nuORF;ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2 ENST00000478055.1_1_5:131553347-131562829:-|nuORF ENST00000478055.1_1_5:131553347-131562829:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2689208984375 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 130.04 1 125.27 124.77 125.77 -4.7725 0 0 0 0.10963 1 25021 25021 6.4869 0.61875 1 44870 1471 29863 29883 44157 44157 -0.0031399072172462184 TDLKEEHKS 9 Unmodified _TDLKEEHKS_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;PCLO|p.Q3062Tfs*25|1|0.2|ENSG00000186472|chr7:82951405-82951406|-/G|frameshift_variant;PCLO|p.T3933Nfs*47|1|0.06|ENSG00000186472|chr7:82916188-82916189|-/T|frameshift_variant;PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant;PCLO|p.M3036Tfs*24|1|0.06|ENSG00000186472|chr7:82951481-82951482|-/G|frameshift_variant;PCLO|p.Y3007Lfs*2|1|0.28|ENSG00000186472|chr7:82951935-82951936|-/A|frameshift_variant;PCLO|p.P2408Lfs*36|1|0.44|ENSG00000186472|chr7:82953730-82953730|G/-|frameshift_variant;PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant;PCLO|p.P1234Afs*11|1|0.31|ENSG00000186472|chr7:82966089-82966090|-/T|frameshift_variant;PCLO|p.E1944Sfs*8|1|0.34|ENSG00000186472|chr7:82955124-82955124|T/-|frameshift_variant;PCLO|p.S1913Vfs*9|1|0.32|ENSG00000186472|chr7:82955216-82955216|T/-|frameshift_variant;PCLO|p.V1883Ffs*29|1|0.09|ENSG00000186472|chr7:82955307-82955307|T/-|frameshift_variant;PCLO|p.I247Lfs*42|1|0.14|ENSG00000186472|chr7:83155902-83155902|T/-|frameshift_variant ENSG00000186472|ENST00000333891|PCLO;PCLO|p.I247Lfs*42|1|0.14|ENSG00000186472|chr7:83155902-83155902|T/-|frameshift_variant ENSG00000186472|ENST00000333891|PCLO MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.775146484375 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 59.551 1 59.551 59.051 60.051 0 0 0 0 0.20628 1 11409 11409 21.747 2.4897 1 44871 7060;12761 29864 29884 44158 44158 -0.004043566329528403 TDLKKKKKKK 10 Unmodified _TDLKKKKKKK_ 0 0 0 REV__ENST00000377291.2_1_5:175110088-175110163:+|nuORF REV__ENST00000377291.2_1_5:175110088-175110163:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7775268554688 2 622.924272 1243.83399 NaN NaN NaN NaN NaN NaN NaN 114.02 1 109.47 108.97 109.97 -4.555 0 0 0 0.22588 1 21889 21889 6.2058 4.146 1 + 44872 21093 29865 29885 44159 44159 0.2218276607034113 TDLLEGDQA 9 Unmodified _TDLLEGDQA_ 0 0 0 REV__ENSG00000178607|ENST00000433197|ERN1 REV__ENSG00000178607|ENST00000433197|ERN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24237060546875 2 481.227279 960.440005 NaN NaN NaN NaN NaN NaN NaN 59.263 1 56.353 55.853 56.853 -2.9105 0 0 0 0.22621 1 11391 11391 15.847 4.2069 1 + 44873 18615 29866 29886 44160 44160 -0.04179709823995381 TDLLMVDDTA 10 Unmodified _TDLLMVDDTA_ 0 0 0 REV__ENST00000373806.1_2_9:124089055-124094878:+|nuORF REV__ENST00000373806.1_2_9:124089055-124094878:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7816772460938 2 547.257722 1092.50089 0.20992 0.00011488 1.3524 0.00074009 1.5623 0.00085497 547.2589215091332 39.712 1.1182 37.307 36.51 37.628 -2.4049 81 31 3 0 0 0 0.53552 1 6962 6962 22.736 4.5899 1 2917200 + + 44874 13544 29867 29887 44161 44161 -0.041659408360601446 TDLNDELV 8 Unmodified _TDLNDELV_ 0 0 0 REV__ENSG00000118156|ENST00000391901|ZNF541 REV__ENSG00000118156|ENST00000391901|ZNF541 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2265930175781 2 459.724372 917.434192 0.34362 0.00015797 0.060831 2.7966E-05 0.40445 0.00018594 459.72444463586214 89.451 0.74639 85.406 85.101 85.847 -4.0443 25 20 2 0 0 0 0.60622 1 17058 17058 21.747 0 1 1378000 + 44875 15540 29868 29888 44162 44162 -0.02782808335655318 TDLQGLRLY 9 Unmodified _TDLQGLRLY_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2024841308594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 85.644 1 85.644 85.144 86.144 0 0 0 0 0.23508 1 16714 16714 2.7352 0 1 44876 7781 29869 29889 44163 44163 0.0461712798901317 TDLQGLRLY 9 Unmodified _TDLQGLRLY_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2174377441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 89.625 1 85.765 85.265 86.265 -3.8595 0 0 0 0.23508 1 17535 17535 4.897 0 1 44877 7781 29869 29889 44164 44164 0.0461712798901317 TDLQGLRLY 9 Unmodified _TDLQGLRLY_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2019348144531 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 114.08 1 109.52 109.02 110.02 -4.555 0 0 0 0.23508 1 21900 21900 2.7352 0 1 44878 7781 29869 29889 44165 44165 0.0461712798901317 TDLRRSPI 8 Unmodified _TDLRRSPI_ 0 0 0 REV__nc|ENSG00000110721|P35790-2|CHKA REV__nc|ENSG00000110721|P35790-2|CHKA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7428894042969 2 479.277441 956.540328 0.19778 9.4791E-05 0.40969 0.00019636 0.60747 0.00029115 479.27730842397614 134.7 1.4442 129.89 129.38 130.82 -4.8175 70 40 2 0 0 0 1.0095 1 26045 26045 5.7604 0 1 2700800 + 44879 15215 29870 29890 44166 44166 0.06031992020314192 TDLRTEGRPD 10 Unmodified _TDLRTEGRPD_ 0 0 0 nc|ENSG00000204444|O95445-2|APOM;ENSG00000204444|ENST00000375916|APOM nc|ENSG00000204444|O95445-2|APOM nc|ENSG00000204444|O95445-2|APOM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7105407714844 3 387.194915 1158.56291 -0.34285 -0.00013275 0.76067 0.00029453 0.41782 0.00016178 387.1951534835518 28.288 0.28024 26.292 26.169 26.449 -1.9962 12 7 2 0 0 0 0.75318 1 4794 4794 4.7159 0.52642 1 439470 44880 7581 29871 29891 44167 44167 -0.010024533727346352 TDLRTEGRPD 10 Unmodified _TDLRTEGRPD_ 0 0 0 nc|ENSG00000204444|O95445-2|APOM;ENSG00000204444|ENST00000375916|APOM nc|ENSG00000204444|O95445-2|APOM nc|ENSG00000204444|O95445-2|APOM MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 387.194915 1158.56291 -0.036747 -1.4228E-05 0.45514 0.00017623 0.41839 0.000162 387.19525911502717 26.357 0.13164 26.357 26.294 26.426 0 0.023757 2.8745E-05 NaN 4.7159 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 268200 44881 7581 29871 29891 -0.010024533727346352 TDLRTEGRPD 10 Unmodified _TDLRTEGRPD_ 0 0 0 nc|ENSG00000204444|O95445-2|APOM;ENSG00000204444|ENST00000375916|APOM nc|ENSG00000204444|O95445-2|APOM nc|ENSG00000204444|O95445-2|APOM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 387.194915 1158.56291 0.24834 9.6155E-05 -0.17674 -6.8432E-05 0.071599 2.7723E-05 387.19487505884126 28.106 0.28481 26.351 26.211 26.496 -1.7552 0.017689 -0.00070523 NaN 4.7159 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 497180 44882 7581 29871 29891 -0.010024533727346352 TDLRTEGRPD 10 Unmodified _TDLRTEGRPD_ 0 0 0 nc|ENSG00000204444|O95445-2|APOM;ENSG00000204444|ENST00000375916|APOM nc|ENSG00000204444|O95445-2|APOM nc|ENSG00000204444|O95445-2|APOM MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 387.194915 1158.56291 -0.34285 -0.00013275 0.76067 0.00029453 0.41782 0.00016178 387.1951534835518 28.288 0.28024 26.292 26.169 26.449 -1.9962 -0.041446 0.00038364 NaN 4.7159 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 439470 44883 7581 29871 29891 -0.010024533727346352 TDLRVKGIY 9 Unmodified _TDLRVKGIY_ 0 0 0 REV__tr|U7SEA9|U7SEA9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02373PE=4SV=1 REV__tr|U7SEA9|U7SEA9_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02373PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.283447265625 2 532.808574 1063.60259 0.090411 4.8172E-05 0.94007 0.00050087 1.0305 0.00054905 532.8098224509934 78.825 0.20878 75.333 75.224 75.433 -3.4926 7 5 2 0 0 0 0.84208 1 15386 15386 7.2892 0 1 556400 + 44884 24844 29872 29892 44168 44168 0.07333718368658992 TDLSLGFY 8 Unmodified _TDLSLGFY_ 0 0 0 REV__ENSG00000197375|ENST00000245407|SLC22A5 REV__ENSG00000197375|ENST00000245407|SLC22A5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2272033691406 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 109.78 1 105.4 104.9 105.9 -4.3776 0 0 0 0.23366 1 21634 21634 1.7423 0 1 + 44885 19331 29873 29893 44169 44169 -0.02209299122102948 TDLTDRPV 8 Unmodified _TDLTDRPV_ 0 0 0 REV__ENSG00000182162|ENST00000381297|P2RY8 REV__ENSG00000182162|ENST00000381297|P2RY8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23895263671875 2 458.740357 915.46616 0.4665 0.000214 -0.33209 -0.00015234 0.13441 6.166E-05 458.74015273228986 42.26 0.74193 42.26 41.897 42.639 0 28 20 2 0 0 0 0.97174 1 7927 7927 19.257 10.664 1 718110 + 44886 18762 29874 29894 44170 44170 0.005046041381433497 TDLTIEYEV 9 Unmodified _TDLTIEYEV_ 0 0 0 TXN2|p.A125T|1|0.19|ENSG00000100348|chr22:36476747-36476747|C/T|missense_variant TXN2|p.A125T|1|0.19|ENSG00000100348|chr22:36476747-36476747|C/T|missense_variant TXN2|p.A125T|1|0.19|ENSG00000100348|chr22:36476747-36476747|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.28369140625 2 541.766237 1081.51792 0.34017 0.00018429 -1.0121 -0.00054831 -0.67191 -0.00036402 541.7655702048938 91.907 0.65602 87.813 87.461 88.117 -4.0946 26 18 2 0 0 0 0.49001 1 17511 17511 28.487 3.0875 1 1837800 44887 26538 29875 29895 44171 44171 -0.019576969586069026 TDLTIEYEV 9 Unmodified _TDLTIEYEV_ 0 0 0 TXN2|p.A125T|1|0.19|ENSG00000100348|chr22:36476747-36476747|C/T|missense_variant TXN2|p.A125T|1|0.19|ENSG00000100348|chr22:36476747-36476747|C/T|missense_variant TXN2|p.A125T|1|0.19|ENSG00000100348|chr22:36476747-36476747|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.766237 1081.51792 0.22579 0.00012232 -0.74206 -0.00040202 -0.51627 -0.0002797 541.7656352080294 87.788 0.5539 87.788 87.466 88.02 0 0.047644 0.00013257 NaN 28.487 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2030700 44888 26538 29875 29895 -0.019576969586069026 TDLVDRFL 8 Unmodified _TDLVDRFL_ 0 0 0 REV__ENST00000502585.1_1_5:14716909-14716963:-|nuORF REV__ENST00000502585.1_1_5:14716909-14716963:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2654724121094 2 489.766374 977.518196 0.0048389 2.37E-06 -0.1083 -5.3041E-05 -0.10346 -5.0671E-05 489.7666763547845 70.555 0.52539 70.555 70.242 70.767 0 21 14 2 0 0 0 0.3584 2 13634 13634;13679 34.187 7.8461 1 2160600 + 44889 20327 29876 29896 44172;44173 44172 0.028537675519032746 TDLVDRFL 8 Unmodified _TDLVDRFL_ 0 0 0 REV__ENST00000502585.1_1_5:14716909-14716963:-|nuORF REV__ENST00000502585.1_1_5:14716909-14716963:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2680969238281 2 489.766374 977.518196 0.024042 1.1775E-05 0.21991 0.0001077 0.24395 0.00011948 489.7665166712795 73.751 0.55514 70.387 70.12 70.675 -3.3643 27 15 2 0 0 0 0.3584 1 14403 14403 34.187 2.0704 1 4639600 + 44890 20327 29876 29896 44174 44174 0.028537675519032746 TDLVDRFL 8 Unmodified _TDLVDRFL_ 0 0 0 REV__ENST00000502585.1_1_5:14716909-14716963:-|nuORF REV__ENST00000502585.1_1_5:14716909-14716963:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2568664550781 2 489.766374 977.518196 0.30506 0.00014941 -0.14266 -6.9868E-05 0.1624 7.954E-05 489.7663241177722 74.095 0.62267 70.419 70.14 70.763 -3.6764 27 17 2 0 0 0 0.64227 1 14065 14065 19.439 0 1 2580500 + 44891 20327 29876 29896 44175 44175 0.028537675519032746 TDLVDRFL 8 Unmodified _TDLVDRFL_ 0 0 0 REV__ENST00000502585.1_1_5:14716909-14716963:-|nuORF REV__ENST00000502585.1_1_5:14716909-14716963:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2678527832031 2 489.766374 977.518196 0.13047 6.39E-05 0.040832 1.9998E-05 0.1713 8.3899E-05 489.766516150163 74.006 0.55913 70.412 70.151 70.71 -3.594 27 15 2 0 0 0 0.3584 1 14044 14044 34.187 7.8461 1 3466800 + 44892 20327 29876 29896 44176 44176 0.028537675519032746 TDLVKLHE 8 Unmodified _TDLVKLHE_ 0 0 0 ENSG00000120051|ENST00000369704|CFAP58 ENSG00000120051|ENST00000369704|CFAP58 ENSG00000120051|ENST00000369704|CFAP58 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7209777832031 2 477.766374 953.518196 0.11466 5.4781E-05 0.23444 0.00011201 0.3491 0.00016679 477.7664723894165 104.99 0.83077 100.61 100.15 100.98 -4.3764 65 23 4 0 0 0 0.66247 1 20058 20058 23.148 0 1 9660000 44893 3114 29877 29897 44177 44177 0.039577675518899014 TDLVLLVI 8 Unmodified _TDLVLLVI_ 0 0 0 REV__ENST00000564398.5_1_1:25598999-25633293:+|nuORF REV__ENST00000564398.5_1_1:25598999-25633293:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 443.7297668457031 2 443.286411 884.55827 NaN NaN NaN NaN NaN NaN NaN 98.717 1 94.584 94.084 95.084 -4.1326 0 0 0 0.22934 1 19386 19386 0.063987 0 1 + 44894 19070 29878 29898 44178 44178 0.11137314222469286 TDLVLRQA 8 Unmodified _TDLVLRQA_ 0 0 0 REV__ENST00000503044.5_1_5:176798183-176798888:+|nuORF REV__ENST00000503044.5_1_5:176798183-176798888:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2400207519531 2 458.266542 914.51853 0.13101 6.0036E-05 0.36181 0.00016581 0.49282 0.00022584 458.2666630100497 20.008 0.24386 18.611 18.516 18.76 -1.3966 11 6 2 0 0 0 0.71273 1 3315 3315 12.532 0 1 457950 + 44895 18087 29879 29899 44179 44179 0.05785187271760606 TDLVLRQA 8 Unmodified _TDLVLRQA_ 0 0 0 REV__ENST00000503044.5_1_5:176798183-176798888:+|nuORF REV__ENST00000503044.5_1_5:176798183-176798888:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.266542 914.51853 0.13101 6.0036E-05 0.36181 0.00016581 0.49282 0.00022584 458.2666630100497 20.008 0.24386 18.611 18.516 18.76 -1.3966 0.023149 -8.1489E-05 NaN 12.532 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 457950 + 44896 18087 29879 29899 0.05785187271760606 TDLVLRQA 8 Unmodified _TDLVLRQA_ 0 0 0 REV__ENST00000503044.5_1_5:176798183-176798888:+|nuORF REV__ENST00000503044.5_1_5:176798183-176798888:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.266542 914.51853 -0.33137 -0.00015186 0.51436 0.00023571 0.18299 8.3858E-05 458.26685015898823 19.89 0.31485 18.565 18.451 18.766 -1.3251 -0.023149 5.8327E-05 NaN 12.532 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 436160 + 44897 18087 29879 29899 0.05785187271760606 TDLYYEYDY 9 Unmodified _TDLYYEYDY_ 0 0 0 tr|U7SK88|U7SK88_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02141PE=4SV=1 tr|U7SK88|U7SK88_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02141PE=4SV=1 tr|U7SK88|U7SK88_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02141PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7531127929688 2 622.753327 1243.4921 NaN NaN NaN NaN NaN NaN NaN 125.63 1 120.98 120.48 121.48 -4.6495 0 0 0 0.23508 1 24172 24172 7.9102 1.187 1 44898 25956 29880 29900 44180 44180 -0.1199059120090169 TDMLVMKKE 9 Unmodified _TDMLVMKKE_ 0 0 0 ENST00000414423.6_1_1:224577357-224577483:-|nuORF ENST00000414423.6_1_1:224577357-224577483:-|nuORF ENST00000414423.6_1_1:224577357-224577483:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7836303710938 2 547.782853 1093.55115 0.27627 0.00015134 1.7231 0.00094388 1.9994 0.0010952 547.7828877591268 32.683 0.48864 30.536 30.306 30.795 -2.1468 24 13 3 0 0 0 0.66316 1 5660 5660 8.7454 0 1 930060 44899 9602 29881 29901 44181 44181 0.008118902880823953 TDMLVMKKE 9 Unmodified _TDMLVMKKE_ 0 0 0 ENST00000414423.6_1_1:224577357-224577483:-|nuORF ENST00000414423.6_1_1:224577357-224577483:-|nuORF ENST00000414423.6_1_1:224577357-224577483:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 547.782853 1093.55115 0.35558 0.00019478 0.97384 0.00053345 1.3294 0.00072824 547.7830995644395 30.631 0.37399 30.631 30.451 30.825 0 0.024005 0.00034647 NaN 8.7454 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 772950 44900 9602 29881 29901 0.008118902880823953 TDMLVMKKE 9 Unmodified _TDMLVMKKE_ 0 0 0 ENST00000414423.6_1_1:224577357-224577483:-|nuORF ENST00000414423.6_1_1:224577357-224577483:-|nuORF ENST00000414423.6_1_1:224577357-224577483:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.782853 1093.55115 0.28156 0.00015423 0.29206 0.00015998 0.57362 0.00031422 547.7829333294596 32.878 0.31498 30.648 30.47 30.785 -2.2305 0.041112 -0.00040048 NaN 8.7454 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 645400 44901 9602 29881 29901 0.008118902880823953 TDMLVMKKE 9 Unmodified _TDMLVMKKE_ 0 0 0 ENST00000414423.6_1_1:224577357-224577483:-|nuORF ENST00000414423.6_1_1:224577357-224577483:-|nuORF ENST00000414423.6_1_1:224577357-224577483:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 547.782853 1093.55115 0.51271 0.00028085 0.64267 0.00035205 1.1554 0.0006329 547.7827703957947 32.761 0.49206 30.613 30.35 30.842 -2.1483 0.0059486 -1.6352E-05 NaN 8.7454 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 856810 44902 9602 29881 29901 0.008118902880823953 TDNDQLGWK 9 Unmodified _TDNDQLGWK_ 0 0 0 REV__RAB3GAP2|p.I261N|1|0.25|ENSG00000118873|chr1:220202305-220202305|A/T|missense_variant REV__RAB3GAP2|p.I261N|1|0.25|ENSG00000118873|chr1:220202305-220202305|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2842407226562 2 538.753995 1075.49344 -0.21075 -0.00011354 0.037917 2.0428E-05 -0.17283 -9.3114E-05 538.7541740323338 18.531 1.4384 17.205 17.013 18.451 -1.3251 122 40 6 0 0 0 0.68435 1 2825 2825 7.2892 1.5574 1 272510000 + 44903 24540 29882 29902 44182 44182 -0.041289123214710344 TDNEEHDDL 9 Unmodified _TDNEEHDDL_ 0 0 0 tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1 tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1 tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7894287109375 2 544.212357 1086.41016 0.04939 2.6879E-05 -0.77688 -0.00042279 -0.72749 -0.00039591 544.212041882627 39.172 0.48521 36.73 36.444 36.929 -2.4419 30 13 3 0 0 0 0.79204 1 6964 6964 1.6526 0 1 1200200 44904 26018 29883 29903 44183 44183 -0.12958693559994572 TDNEKLTP 8 Unmodified _TDNEKLTP_ 0 0 0 REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2330322265625 2 459.232364 916.450176 -0.058157 -2.6708E-05 0.3012 0.00013832 0.24304 0.00011161 459.23248829100226 61.495 1.0003 58.534 57.863 58.864 -2.9614 50 28 3 0 0 0 0.27274 2 11842 11842;11855 38.151 4.0487 1 4459700 + 44905 19211 29884 29904 44184;44185 44184 -0.011391020987730371 TDNEKLTP 8 Unmodified _TDNEKLTP_ 0 0 0 REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 459.232364 916.450176 -0.0606 -2.783E-05 0.45734 0.00021002 0.39674 0.00018219 459.2325603622224 58.634 0.66455 58.634 58.409 59.074 0 0.031354 0.0001278 NaN 38.151 33 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3379000 + 44906 19211 29884 29904 -0.011391020987730371 TDNEKLTP 8 Unmodified _TDNEKLTP_ 0 0 0 REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.232364 916.450176 -0.058157 -2.6708E-05 0.3012 0.00013832 0.24304 0.00011161 459.23248829100226 61.495 1.0003 58.534 57.863 58.864 -2.9614 -0.069165 -1.5604E-05 NaN 38.151 50 28 3 NaN NaN NaN NaN 0 NaN NaN 0 4459700 + 44907 19211 29884 29904 -0.011391020987730371 TDNEKLTP 8 Unmodified _TDNEKLTP_ 0 0 0 REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.232364 916.450176 0.070578 3.2412E-05 0.31219 0.00014337 0.38277 0.00017578 459.2324430827947 61.956 1.1684 58.586 57.829 58.997 -3.3694 -0.016877 -5.5066E-06 NaN 38.151 48 32 3 NaN NaN NaN NaN 0 NaN NaN 0 3471600 + 44908 19211 29884 29904 -0.011391020987730371 TDNELEKI 8 Unmodified _TDNELEKI_ 0 0 0 nc|ENSG00000148672|P00367-2|GLUD1;GLUD1|p.K386Nfs*22|1|0.05|ENSG00000148672|chr10:87060727-87060728|-/ACATACCATACAG|frameshift_variant;nc|ENSG00000148672|P00367-3|GLUD1;ENSG00000148672|ENST00000277865|GLUD1 nc|ENSG00000148672|P00367-2|GLUD1 nc|ENSG00000148672|P00367-2|GLUD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2457275390625 2 481.245472 960.476391 0.10602 5.102E-05 -0.47546 -0.00022881 -0.36944 -0.00017779 481.24457546735755 61.033 0.38508 57.799 57.689 58.074 -3.2347 17 10 3 0 0 0 8448 1 11473 11473 9.544 0 1 668460 44909 4755 29885 29905 44186 44186 -0.005428329272717747 TDNMQEDP 8 Unmodified _TDNMQEDP_ 0 0 0 REV__SALL1|p.A362Pfs*19|1|0.3|ENSG00000103449|chr16:51141138-51141138|C/-|frameshift_variant REV__SALL1|p.A362Pfs*19|1|0.3|ENSG00000103449|chr16:51141138-51141138|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.2069091796875 3 317.123768 948.349476 -0.80301 -0.00025465 0.6834 0.00021672 -0.11961 -3.7932E-05 317.12442388700816 64.537 1.1432 64.537 63.781 64.924 0 60 32 3 0 0 0 1.0271 1 12294 12294 1.1933 0.23107 1 2241200 + 44910 14881 29886 29906 44187 44187 -0.12676502143915513 TDNTYTKH 8 Unmodified _TDNTYTKH_ 0 0 0 ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;CCNB1|p.V272G|1|0.16|ENSG00000134057|chr5:69174986-69174986|T/G|missense_variant ENSG00000134057|ENST00000256442|CCNB1 ENSG00000134057|ENST00000256442|CCNB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2559814453125 2 490.227613 978.440674 0.24487 0.00012004 -0.28223 -0.00013835 -0.03736 -1.8315E-05 490.22750229766433 27.133 0.68382 27.133 26.807 27.49 0 28 19 2 0 0 0 0.66265 1 4813 4813 18.135 2.2878 1 766040 44911 3824 29887 29907 44188 44188 -0.049408703842800605 TDPAKKKK 8 Unmodified _TDPAKKKK_ 0 0 0 REV__ENSG00000147679|ENST00000309822|UTP23 REV__ENSG00000147679|ENST00000309822|UTP23 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2243957519531 2 458.284734 914.554916 NaN NaN NaN NaN NaN NaN NaN 76.985 1 73.569 73.069 74.069 -3.4151 0 0 0 0.2074 1 15028 15028 19.439 4.8573 1 + 44912 16948 29888 29908 44189 44189 0.09422064168472843 TDPGKVSGL 9 Unmodified _TDPGKVSGL_ 0 0 0 ENST00000606259.5_1_3:50402861-50402981:+|nuORF ENST00000606259.5_1_3:50402861-50402981:+|nuORF ENST00000606259.5_1_3:50402861-50402981:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.236083984375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 56.585 1 56.585 56.085 57.085 0 0 0 0 0.23508 1 10808 10808 10.824 1.4765 1 44913 11744 29889 29909 44190 44190 0.019015056264720442 TDPHALHPR 9 Unmodified _TDPHALHPR_ 0 0 0 ENST00000300131.7_1_12:57488507-57488825:+|nuORF ENST00000300131.7_1_12:57488507-57488825:+|nuORF ENST00000300131.7_1_12:57488507-57488825:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2710571289062 2 522.27269 1042.53083 0.4378 0.00022865 -0.44678 -0.00023334 -0.0089803 -4.6902E-06 522.2724026544236 42.99 0.80316 42.99 42.491 43.295 0 35 22 2 0 0 0 0.46598 1 7950 7950 0.029283 0 1 1394700 44914 8544 29890 29910 44191 44191 0.011262237347864357 TDPHALHPR 9 Unmodified _TDPHALHPR_ 0 0 0 ENST00000300131.7_1_12:57488507-57488825:+|nuORF ENST00000300131.7_1_12:57488507-57488825:+|nuORF ENST00000300131.7_1_12:57488507-57488825:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2723388671875 2 522.27269 1042.53083 -0.2337 -0.00012205 0.47322 0.00024715 0.23952 0.0001251 522.2728782980041 45.82 0.72786 42.979 42.619 43.347 -2.8409 34 20 2 0 0 0 0.62102 1 8572 8572 11.64 4.3511 1 1425400 44915 8544 29890 29910 44192 44192 0.011262237347864357 TDPHALHPR 9 Unmodified _TDPHALHPR_ 0 0 0 ENST00000300131.7_1_12:57488507-57488825:+|nuORF ENST00000300131.7_1_12:57488507-57488825:+|nuORF ENST00000300131.7_1_12:57488507-57488825:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.274169921875 2 522.27269 1042.53083 -0.051402 -2.6846E-05 -0.26442 -0.0001381 -0.31582 -0.00016494 522.2726330422474 45.942 0.69477 43.075 42.677 43.371 -2.8666 32 19 2 0 0 0 0.54354 1 8399 8399 16.942 1.0951 1 1156800 44916 8544 29890 29910 44193 44193 0.011262237347864357 TDPHALHPR 9 Unmodified _TDPHALHPR_ 0 0 0 ENST00000300131.7_1_12:57488507-57488825:+|nuORF ENST00000300131.7_1_12:57488507-57488825:+|nuORF ENST00000300131.7_1_12:57488507-57488825:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2721557617188 2 522.27269 1042.53083 0.41326 0.00021583 -1.5038 -0.0007854 -1.0906 -0.00056957 522.2716787823192 72.207 0.79309 68.669 68.258 69.051 -3.5385 36 22 3 0 0 0 0.48181 1 13648 13648 2.6312 0 1 1407700 44917 8544 29890 29910 44194 44194 0.011262237347864357 TDPKRIAK 8 Unmodified _TDPKRIAK_ 0 0 0 ENO1|p.N324D|1|0.2|ENSG00000074800|chr1:8863988-8863988|T/C|missense_variant ENO1|p.N324D|1|0.2|ENSG00000074800|chr1:8863988-8863988|T/C|missense_variant ENO1|p.N324D|1|0.2|ENSG00000074800|chr1:8863988-8863988|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25653076171875 2 464.782359 927.550165 0.17605 8.1823E-05 -0.24558 -0.00011414 -0.069529 -3.2316E-05 464.7822226448932 29.498 0.28048 29.498 29.329 29.61 0 13 7 2 0 0 0 0.752 1 5244 5244 6.7232 0 1 689530 44918 947 29891 29911 44195 44195 0.08349180025709302 TDPKRIAK 8 Unmodified _TDPKRIAK_ 0 0 0 ENO1|p.N324D|1|0.2|ENSG00000074800|chr1:8863988-8863988|T/C|missense_variant ENO1|p.N324D|1|0.2|ENSG00000074800|chr1:8863988-8863988|T/C|missense_variant ENO1|p.N324D|1|0.2|ENSG00000074800|chr1:8863988-8863988|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25732421875 2 464.782359 927.550165 0.49674 0.00023088 -0.85425 -0.00039704 -0.35751 -0.00016616 464.7819543004098 31.468 0.42299 29.32 29.091 29.514 -2.1483 17 11 2 0 0 0 0.72428 1 5415 5415 10.824 0.75 1 792810 44919 947 29891 29911 44196 44196 0.08349180025709302 TDPKRIAK 8 Unmodified _TDPKRIAK_ 0 0 0 ENO1|p.N324D|1|0.2|ENSG00000074800|chr1:8863988-8863988|T/C|missense_variant ENO1|p.N324D|1|0.2|ENSG00000074800|chr1:8863988-8863988|T/C|missense_variant ENO1|p.N324D|1|0.2|ENSG00000074800|chr1:8863988-8863988|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2307434082031 3 310.190665 927.550165 -0.75626 -0.00023458 0.61731 0.00019148 -0.13895 -4.31E-05 310.19076548501477 25.776 0.44911 23.878 23.661 24.11 -1.8982 16 12 2 0 0 0 1.0271 1 4276 4276 0 0 1 647730 44920 947 29891 29911 44197 44197 0.08349180025709302 TDPKRIAK 8 Unmodified _TDPKRIAK_ 0 0 0 ENO1|p.N324D|1|0.2|ENSG00000074800|chr1:8863988-8863988|T/C|missense_variant ENO1|p.N324D|1|0.2|ENSG00000074800|chr1:8863988-8863988|T/C|missense_variant ENO1|p.N324D|1|0.2|ENSG00000074800|chr1:8863988-8863988|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.782359 927.550165 0.25093 0.00011663 -0.23147 -0.00010758 0.019464 9.0466E-06 464.7822754059469 31.388 0.34565 29.158 28.99 29.336 -2.2305 -0.152 0.00018889 NaN 10.824 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1006700 44921 947 29891 29911 0.08349180025709302 TDPLEPDE 8 Unmodified _TDPLEPDE_ 0 0 0 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23834228515625 2 458.20073 914.386907 NaN NaN NaN NaN NaN NaN NaN 77.308 1 73.542 73.042 74.042 -3.7664 0 0 0 0.2074 1 14645 14645 19.439 1.304 1 + 44922 15857 29892 29912 44198 44198 -0.07371087606668425 TDPLSKATE 9 Unmodified _TDPLSKATE_ 0 0 0 REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2438659667969 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 67.252 1 63.925 63.425 64.425 -3.3268 0 0 0 0.19638 1 12678 12678 0.12781 0 1 + 44923 15972 29893 29913 44199 44199 -0.005428329272831434 TDPLVIKG 8 Unmodified _TDPLVIKG_ 0 0 0 REV__SACS|p.L2452V|1|0.39|ENSG00000151835|chr13:23336522-23336522|A/C|missense_variant REV__SACS|p.L2452V|1|0.39|ENSG00000151835|chr13:23336522-23336522|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.3353576660156 2 421.752736 841.490919 -0.13753 -5.8004E-05 0.039082 1.6483E-05 -0.098448 -4.1521E-05 421.7527378387153 61.074 0.41005 58.14 57.961 58.371 -2.9333 19 11 2 0 0 0 0.99494 1 11748 11748 8.5933 0 1 1088700 + 44924 24589 29894 29914 44200 44200 0.06383284011531032 TDPLVIKG 8 Unmodified _TDPLVIKG_ 0 0 0 REV__SACS|p.L2452V|1|0.39|ENSG00000151835|chr13:23336522-23336522|A/C|missense_variant REV__SACS|p.L2452V|1|0.39|ENSG00000151835|chr13:23336522-23336522|A/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 421.752736 841.490919 0.079838 3.3672E-05 -0.14773 -6.2306E-05 -0.067894 -2.8634E-05 421.75259361881336 61.627 0.46151 58.257 57.967 58.429 -3.3694 0.047123 -0.00011935 NaN 8.5933 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 742330 + 44925 24589 29894 29914 0.06383284011531032 TDPLVIKG 8 Unmodified _TDPLVIKG_ 0 0 0 REV__SACS|p.L2452V|1|0.39|ENSG00000151835|chr13:23336522-23336522|A/C|missense_variant REV__SACS|p.L2452V|1|0.39|ENSG00000151835|chr13:23336522-23336522|A/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 421.752736 841.490919 -0.11785 -4.9702E-05 0.15306 6.4553E-05 0.035212 1.4851E-05 421.7527237584632 61.472 0.45412 58.233 57.926 58.381 -3.2395 0.022649 0.00013437 NaN 8.5933 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 857750 + 44926 24589 29894 29914 0.06383284011531032 TDPPGCTVE 9 Unmodified _TDPPGCTVE_ 0 0 0 REV__UNC5D|p.M610T|1|0.29|ENSG00000156687|chr8:35748589-35748589|T/C|missense_variant REV__UNC5D|p.M610T|1|0.29|ENSG00000156687|chr8:35748589-35748589|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.248046875 2 459.6973 917.380048 0.5841 0.00026851 0.13414 6.1663E-05 0.71824 0.00033017 459.69726879549665 100.49 0.59137 100.49 100.1 100.69 0 26 16 2 0 0 0 0.40602 1 19734 19734 25.399 0.72543 1 1795000 + 44927 25518 29895 29915 44201 44201 -0.08194723758879263 TDPPSAPCQ 9 Unmodified _TDPPSAPCQ_ 0 0 0 REV__ENST00000561344.5_1_15:96826128-96833920:-|nuORF REV__ENST00000561344.5_1_15:96826128-96833920:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2248229980469 2 458.197467 914.380382 0.10135 4.644E-05 1.0573 0.00048445 1.1587 0.00053089 458.1979172723756 35.613 0.72363 33.36 32.917 33.641 -2.2527 34 20 3 0 0 0 0.68435 1 6217 6217 7.2892 0 1 1360500 + 44928 22433 29896 29916 44202 44202 -0.08023304039022605 TDPSGLGY 8 Unmodified _TDPSGLGY_ 0 0 0 REV__tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1 REV__tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3003845214844 2 405.187426 808.360298 NaN NaN NaN NaN NaN NaN NaN 32.633 1 30.402 29.902 30.902 -2.2305 0 0 0 0.21486 1 5952 5952 5.7604 0 1 + 44929 25337 29897 29917 44203 44203 -0.05154731707330029 TDPSLGITDY 10 Unmodified _TDPSLGITDY_ 0 0 0 REV__nc|ENSG00000184571|Q7Z3Z3|PIWIL3 REV__nc|ENSG00000184571|Q7Z3Z3|PIWIL3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2694091796875 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 19.787 1 19.787 19.287 20.287 0 0 0 0 0.17827 1 3249 3249 32.305 8.2849 1 + 44930 18905 29898 29918 44204 44204 -0.03950867618414122 TDPYRTIL 8 Unmodified _TDPYRTIL_ 0 0 0 REV__ENST00000562158.1_1_3:108895753-108896005:-|nuORF REV__ENST00000562158.1_1_3:108895753-108896005:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2760925292969 2 489.766374 977.518196 0.0048389 2.37E-06 -0.1083 -5.3041E-05 -0.10346 -5.0671E-05 489.7666763547845 70.555 0.52539 70.555 70.242 70.767 0 21 14 2 0 0 0 0.99494 1 13618 13618 8.5933 0 1 2160600 + 44931 23063 29899 29919 44205 44205 0.028537675519032746 TDQAKEGVD 9 Unmodified _TDQAKEGVD_ 0 0 0 REV__ENSG00000165406|ENST00000453424|MARCHF8 REV__ENSG00000165406|ENST00000453424|MARCHF8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7859802246094 2 481.724904 961.435254 NaN NaN NaN NaN NaN NaN NaN 146.6 1 146.6 146.1 147.1 0 0 0 0 0.1761 1 29316 29316 26.884 7.4447 1 + 44932 17766 29900 29920 44206 44206 -0.04700593966754241 TDQDLKEL 8 Unmodified _TDQDLKEL_ 0 0 0 ENSG00000122870|ENST00000373886|BICC1 ENSG00000122870|ENST00000373886|BICC1 ENSG00000122870|ENST00000373886|BICC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24554443359375 2 481.245472 960.476391 -0.10135 -4.8773E-05 0.060523 2.9127E-05 -0.040824 -1.9647E-05 481.2454865115772 95.925 1.4896 95.925 95.456 96.945 0 129 42 5 0 0 0 0.45067 1 18893 18893 30.225 0 1 164850000 44933 3245 29901 29921 44207 44207 -0.005428329272717747 TDQGCHPQA 9 Unmodified _TDQGCHPQA_ 0 0 0 nc|ENSG00000124429|Q8WVV4-3|POF1B;ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B nc|ENSG00000124429|Q8WVV4-3|POF1B nc|ENSG00000124429|Q8WVV4-3|POF1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7237854003906 2 478.698166 955.381779 -0.064513 -3.0882E-05 0.86879 0.00041589 0.80428 0.00038501 478.69836334673374 79.661 0.91359 75.856 75.475 76.388 -3.8048 66 25 3 0 0 0 0.85111 1 15213 15213 6.7232 6.7232 1 12707000 44934 3315 29902 29922 44208 44208 -0.0976966995026487 TDQILSKL 8 Unmodified _TDQILSKL_ 0 0 0 REV__N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant REV__N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2292785644531 2 459.26875 916.522947 0.15931 7.3165E-05 0.66241 0.00030423 0.82172 0.00037739 459.2689153708691 33.861 0.34271 31.714 31.532 31.875 -2.1468 14 9 2 0 0 0 0.79017 1 5898 5898 4.756 0 1 309990 + 44935 14855 29903 29923 44209 44209 0.06134651694674176 TDQPRLADY 9 Unmodified _TDQPRLADY_ 0 0 0 REV__ENSG00000133056|ENST00000684373|PIK3C2B REV__ENSG00000133056|ENST00000684373|PIK3C2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.265380859375 2 539.76182 1077.50909 0.46624 0.00025166 1.3629 0.00073562 1.8291 0.00098728 539.7627531628249 29.688 1.0524 27.796 27.226 28.279 -1.8928 103 29 5 0 0 0 0.63326 1 5115 5115 10.824 4.6181 1 15073000 + 44936 16152 29904 29924 44210 44210 -0.02656625804434043 TDQQLNTVY 9 Unmodified _TDQQLNTVY_ 0 0 0 REV__ENSG00000158270|ENST00000400256|COLEC12 REV__ENSG00000158270|ENST00000400256|COLEC12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2622680664062 2 541.261653 1080.50875 0.13655 7.3911E-05 1.1169 0.00060456 1.2535 0.00067847 541.2625147130084 57.552 0.71692 54.347 53.829 54.546 -3.2052 28 19 2 0 0 0 0.60061 1 10751 10751 13.042 0 1 763420 + 44937 17329 29905 29925 44211 44211 -0.028280455242793323 TDQSHHHGY 9 Unmodified _TDQSHHHGY_ 0 0 0 REV__nc|ENSG00000153094|O43521-17|BCL2L11 REV__nc|ENSG00000153094|O43521-17|BCL2L11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.280029296875 2 541.225936 1080.43732 0.29166 0.00015785 0.011592 6.2741E-06 0.30325 0.00016413 541.2257640901988 113.41 0.97533 113.41 112.97 113.94 0 75 27 4 0 0 0 0.64382 1 22233 22233 10.074 0 1 14369000 + 44938 24103 29906 29926 44212 44212 -0.09968120438270489 TDQSHHHGY 9 Unmodified _TDQSHHHGY_ 0 0 0 REV__nc|ENSG00000153094|O43521-17|BCL2L11 REV__nc|ENSG00000153094|O43521-17|BCL2L11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2606811523438 2 541.225936 1080.43732 0.52858 0.00028608 -0.48184 -0.00026078 0.046743 2.5298E-05 541.2256639184816 118.37 1.3629 113.76 113.03 114.39 -4.6106 89 37 3 0 0 0 0.57447 1 22645 22645 14.838 0.93222 1 25115000 + 44939 24103 29906 29926 44213 44213 -0.09968120438270489 TDQVKQKI 8 Unmodified _TDQVKQKI_ 0 0 0 REV__ENST00000489546.5_1_2:99635091-99688291:-|nuORF REV__ENST00000489546.5_1_2:99635091-99688291:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78662109375 2 480.279649 958.544745 0.61327 0.00029454 0.056798 2.7279E-05 0.67007 0.00032182 480.2793134345563 109.15 0.77321 104.97 104.63 105.4 -4.1826 64 21 5 0 0 0 0.68128 1 20971 20971 16.942 1.0951 1 2748100 + 44940 16302 29907 29927 44214 44214 0.06381456443239131 TDQVKQKI 8 Unmodified _TDQVKQKI_ 0 0 0 REV__ENST00000489546.5_1_2:99635091-99688291:-|nuORF REV__ENST00000489546.5_1_2:99635091-99688291:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.279649 958.544745 -0.4236 -0.00020345 0.19178 9.211E-05 -0.23182 -0.00011134 480.2798261423082 109.27 0.74002 104.9 104.54 105.28 -4.3776 -0.057031 5.2817E-06 NaN 16.942 44 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2986400 + 44941 16302 29907 29927 0.06381456443239131 TDQVKQKI 8 Unmodified _TDQVKQKI_ 0 0 0 REV__ENST00000489546.5_1_2:99635091-99688291:-|nuORF REV__ENST00000489546.5_1_2:99635091-99688291:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.279649 958.544745 -0.16055 -7.711E-05 0.24315 0.00011678 0.082599 3.9671E-05 480.2797923432424 109.44 0.73658 104.99 104.57 105.3 -4.4518 0.040465 5.4623E-05 NaN 16.942 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2612900 + 44942 16302 29907 29927 0.06381456443239131 TDQVKQKI 8 Unmodified _TDQVKQKI_ 0 0 0 REV__ENST00000489546.5_1_2:99635091-99688291:-|nuORF REV__ENST00000489546.5_1_2:99635091-99688291:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.279649 958.544745 0.61327 0.00029454 0.056798 2.7279E-05 0.67007 0.00032182 480.2793134345563 109.15 0.77321 104.97 104.63 105.4 -4.1826 0.016566 -0.00012438 NaN 16.942 64 21 5 NaN NaN NaN NaN 0 NaN NaN 0 2748100 + 44943 16302 29907 29927 0.06381456443239131 TDQVTVLW 8 Unmodified _TDQVTVLW_ 0 0 0 REV__ENSG00000013364|ENST00000357402|MVP REV__ENSG00000013364|ENST00000357402|MVP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78741455078125 2 481.2531 960.491647 -0.15687 -7.5492E-05 0.28137 0.00013541 0.1245 5.9918E-05 481.2532178760344 109.54 0.66756 105.09 104.71 105.38 -4.4518 30 18 2 0 0 0 0.68128 1 20965 20965 16.942 1.0951 1 1373100 + 44944 13947 29908 29928 44215 44215 0.00982078660570096 TDRALPGW 8 Unmodified _TDRALPGW_ 0 0 0 REV__nc|ENSG00000154930|Q9NUB1-2|ACSS1 REV__nc|ENSG00000154930|Q9NUB1-2|ACSS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23846435546875 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 110.87 1 106.64 106.14 107.14 -4.2289 0 0 0 0.21486 1 21334 21334 10.183 0.83596 1 + 44945 17203 29909 29929 44216 44216 0.0003634506618936939 TDRETCMT 8 Unmodified _TDRETCMT_ 0 0 0 REV__LTN1|p.S725Ifs*7|1|0.06|ENSG00000198862|chr21:28960696-28960697|-/ATGTTAAAAA|frameshift_variant REV__LTN1|p.S725Ifs*7|1|0.06|ENSG00000198862|chr21:28960696-28960697|-/ATGTTAAAAA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7416076660156 2 478.694235 955.373916 0.26646 0.00012755 0.71348 0.00034154 0.97994 0.00046909 478.6946391049477 28.222 0.73465 26.467 26.211 26.946 -1.7552 37 20 2 0 0 0 0.95624 1 4794 4794 21.747 21.747 1 769670 + 44946 19465 29910 29930 44217 44217 -0.10555565262052369 TDRFYNLF 8 Unmodified _TDRFYNLF_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 538.2169189453125 2 538.263999 1074.51345 NaN NaN NaN NaN NaN NaN NaN 70.819 1 67.352 66.852 67.852 -3.467 0 0 0 0.21486 1 13415 13415 8.5933 0 1 + 44947 19398 29911 29931 44218 44218 -0.020831165908703042 TDRGVMSY 8 Unmodified _TDRGVMSY_ 0 0 0 IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant;ENST00000602190.1_1_19:50164877-50165571:-|nuORF;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3 IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2502746582031 2 464.713285 927.412016 -0.20791 -9.6621E-05 0.057005 2.6491E-05 -0.15091 -7.0129E-05 464.7135768383823 50.567 0.39146 47.686 47.537 47.928 -2.8811 19 10 2 0 0 0 0.54916 1 9581 9581 25.399 3.6527 1 1253200 44948 3429 29912 29932 44219 44219 -0.05459311285073909 TDRHSLSL 8 Unmodified _TDRHSLSL_ 0 0 0 ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;nc|ENSG00000139926|Q96NE9-3|FRMD6 ENSG00000139926|ENST00000344768|FRMD6 ENSG00000139926|ENST00000344768|FRMD6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648254394531 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 108.34 1 108.34 107.84 108.84 0 0 0 0 0.23584 1 21307 21307 0.12286 0 1 44949 4271 29913 29933 44220 44220 0.010754262322848263 TDRIVKIW 8 Unmodified _TDRIVKIW_ 0 0 0 WDFY1|p.T396P|1|0.11|ENSG00000085449|chr2:223878718-223878718|T/G|missense_variant;ENSG00000085449|ENST00000233055|WDFY1 WDFY1|p.T396P|1|0.11|ENSG00000085449|chr2:223878718-223878718|T/G|missense_variant WDFY1|p.T396P|1|0.11|ENSG00000085449|chr2:223878718-223878718|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.19635009765625 3 344.206315 1029.59712 NaN NaN NaN NaN NaN NaN NaN 124.17 1 119.6 119.1 120.1 -4.5757 0 0 0 0.21486 1 24482 24482 1.6526 0 1 44950 1679 29914 29934 44221 44221 0.08350039576839663 TDRIVKIW 8 Unmodified _TDRIVKIW_ 0 0 0 WDFY1|p.T396P|1|0.11|ENSG00000085449|chr2:223878718-223878718|T/G|missense_variant;ENSG00000085449|ENST00000233055|WDFY1 WDFY1|p.T396P|1|0.11|ENSG00000085449|chr2:223878718-223878718|T/G|missense_variant WDFY1|p.T396P|1|0.11|ENSG00000085449|chr2:223878718-223878718|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.17877197265625 3 344.206315 1029.59712 NaN NaN NaN NaN NaN NaN NaN 124.41 1 119.82 119.32 120.32 -4.5926 0 0 0 0.21486 1 23938 23938 1.6526 0 1 44951 1679 29914 29934 44222 44222 0.08350039576839663 TDRKLKFPL 9 Unmodified _TDRKLKFPL_ 0 0 0 ENST00000423961.1_1_7:27502029-27502443:+|nuORF ENST00000423961.1_1_7:27502029-27502443:+|nuORF ENST00000423961.1_1_7:27502029-27502443:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 373.1138610839844 3 373.229119 1116.66553 -0.79223 -0.00029568 0.84223 0.00031434 0.049998 1.8661E-05 373.2293460787951 45.491 0.67168 42.625 42.291 42.963 -2.8665 49 18 4 0 0 0 0.88054 1 8200 8200 2.2828 0 1 4513700 44952 9696 29915 29935 44223 44223 0.11186284156724469 TDRLEITFS 9 Unmodified _TDRLEITFS_ 0 0 0 REV__ENSG00000080618|ENST00000181383|CPB2 REV__ENSG00000080618|ENST00000181383|CPB2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2796020507812 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 29.61 1 29.61 29.11 30.11 0 0 0 0 0.21469 1 5296 5296 19.257 2.1441 1 + 44953 14415 29916 29936 44224 44224 0.008088313724329055 TDRLHEKKP 9 Unmodified _TDRLHEKKP_ 0 0 0 REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2;REV__nc|ENSG00000152404|Q2TBE0-2|CWF19L2 REV__nc|ENSG00000152404|Q2TBE0-2|CWF19L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2225646972656 3 375.212128 1122.61456 -0.25444 -9.5468E-05 -0.33799 -0.00012682 -0.59243 -0.00022229 375.21201776444997 15.831 0.41683 15.831 15.641 16.058 0 34 11 4 0 0 0 0.78802 1 2405 2405 2.2828 0 1 20845000 + 44954 13621;13622 29917 29937 44225 44225 0.058153351118335195 TDRLLQIHR 9 Unmodified _TDRLLQIHR_ 0 0 0 ENST00000308724.9_1_14:24035815-24036431:-|nuORF ENST00000308724.9_1_14:24035815-24036431:-|nuORF ENST00000308724.9_1_14:24035815-24036431:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.33642578125 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 30.663 1 28.546 28.046 29.046 -2.1167 0 0 0 0.23508 1 5546 5546 4.3292 0 1 44955 8629 29918 29938 44226 44226 0.08778730240078403 TDRLRSALGY 10 Unmodified _TDRLRSALGY_ 0 0 0 REV__nc|ENSG00000172053|P47897-2|QARS1 REV__nc|ENSG00000172053|P47897-2|QARS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3138427734375 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 100.12 1 95.958 95.458 96.458 -4.1594 0 0 0 0.22588 1 19672 19672 10.074 0.6908 1 + 44956 18270 29919 29939 44227 44227 0.04019031249231375 TDRQPEAP 8 Unmodified _TDRQPEAP_ 0 0 0 ENSG00000158863|ENST00000289921|FHIP2B ENSG00000158863|ENST00000289921|FHIP2B ENSG00000158863|ENST00000289921|FHIP2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2249755859375 2 457.222331 912.430109 0.21134 9.6629E-05 0.41263 0.00018866 0.62397 0.00028529 457.2225727190995 18.092 0.31411 18.092 17.952 18.266 0 17 8 3 0 0 0 8448 1 2900 2900 0.68139 0 1 1203500 44957 5182 29920 29940 44228 44228 -0.0296085303871223 TDRWLVIDHK 10 Unmodified _TDRWLVIDHK_ 0 0 0 FADS2|p.R41H|1|0.37|ENSG00000134824|chr11:61828512-61828512|G/A|missense_variant FADS2|p.R41H|1|0.37|ENSG00000134824|chr11:61828512-61828512|G/A|missense_variant FADS2|p.R41H|1|0.37|ENSG00000134824|chr11:61828512-61828512|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 428.13336181640625 3 428.234933 1281.68297 0.43752 0.00018736 3.3477 0.0014336 3.7852 0.001621 428.23656376136455 22.075 0.2434 20.601 20.519 20.763 -1.4742 9 6 2 0 0 0 0.75587 1 3787 3787 3.8763 0.28927 1 531340 44958 11791 29921 29941 44229 44229 0.05339579691690233 TDSDDDKNDSY 11 Unmodified _TDSDDDKNDSY_ 0 0 0 REV__ZNF639|p.F53_D54insKYS|1|0.05|ENSG00000121864|chr3:179329717-179329718|-/CAAGTACAG|inframe_insertion REV__ZNF639|p.F53_D54insKYS|1|0.05|ENSG00000121864|chr3:179329717-179329718|-/CAAGTACAG|inframe_insertion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2461853027344 3 425.493355 1273.45823 -0.53732 -0.00022863 1.2132 0.00051619 0.67584 0.00028757 425.4939635448918 35.906 0.74252 33.513 33.201 33.943 -2.3938 38 20 2 0 0 0 0.96147 1 6614 6614 2.8433 0 1 1543700 + 44959 25587 29922 29942 44230 44230 -0.16755664430593242 TDSDHTYEVI 10 Unmodified _TDSDHTYEVI_ 0 0 0 REV__nc|ENSG00000174516|Q8N2H9-4|PELI3 REV__nc|ENSG00000174516|Q8N2H9-4|PELI3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.26171875 2 590.26185 1178.50915 NaN NaN NaN NaN NaN NaN NaN 51.387 1 48.342 47.842 48.842 -3.0453 0 0 0 0.22576 1 9435 9435 14.838 0 1 + 44960 18417 29923 29943 44231 44231 -0.072966705951103 TDSDLASFLI 10 Unmodified _TDSDLASFLI_ 0 0 0 REV__ENSG00000120071|ENST00000432791|KANSL1 REV__ENSG00000120071|ENST00000432791|KANSL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2755737304688 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 161.94 1 156.75 156.25 157.25 -5.1878 0 0 0 2.8426 1 31434 31434 25.997 13.757 1 + 44961 15609 29924 29944 44232 44232 -0.0031399072170188447 TDSDRWSL 8 Unmodified _TDSDRWSL_ 0 0 0 ENSG00000158246|ENST00000289166|TENT5B ENSG00000158246|ENST00000289166|TENT5B ENSG00000158246|ENST00000289166|TENT5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2755432128906 2 490.227613 978.440674 0.50943 0.00024974 -0.54345 -0.00026642 -0.034022 -1.6679E-05 490.2273458093358 47.561 5.9984 47.561 44.849 50.848 0 217 171 2 0 0 0 0.45067 1 9164 9164 30.225 1.738 1 7435900 44962 5158 29925 29945 44233 44233 -0.04940870384291429 TDSDVEVPFG 10 Unmodified _TDSDVEVPFG_ 0 0 0 REV__nc|ENSG00000185345|O60260-6|PRKN REV__nc|ENSG00000185345|O60260-6|PRKN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2832641601562 2 533.240386 1064.46622 0.53018 0.00028271 1.229 0.00065536 1.7592 0.00093808 533.7442398407778 116.72 0.27816 112.37 112.2 112.48 -4.3585 10 7 2 0 0 0 0.83242 1 22459 22459 14.838 2.3067 1 436610 + 44963 18960 29926 29946 44234 44234 -0.06343440652517529 TDSFHTELH 9 Unmodified _TDSFHTELH_ 0 0 0 ENSG00000104901|ENST00000221498|DKKL1 ENSG00000104901|ENST00000221498|DKKL1 ENSG00000104901|ENST00000221498|DKKL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77685546875 2 543.74617 1085.47779 -2.293E-06 -1.2468E-09 3.602 0.0019586 3.602 0.0019586 543.7478574720387 48.14 0.34878 45.19 45.016 45.365 -2.9499 13 9 2 0 0 0 0.48644 1 8837 8837 20.454 0 1 927120 44964 2266 29927 29947 44235 44235 -0.061531988385240766 TDSGFLFPP 9 Unmodified _TDSGFLFPP_ 0 0 0 REV__ENSG00000176273|ENST00000427197|SLC35G1 REV__ENSG00000176273|ENST00000427197|SLC35G1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2556457519531 2 490.739825 979.465098 0.12429 6.0993E-05 0.2323 0.000114 0.35659 0.00017499 490.7398775076049 51.254 0.60142 48.209 47.802 48.403 -3.0453 28 16 2 0 0 0 0.60698 1 9436 9436 23.148 1.4018 1 5820500 + 44965 18505 29928 29948 44236 44236 -0.025456102307657602 TDSHEGSLQL 10 Unmodified _TDSHEGSLQL_ 0 0 0 nc|ENSG00000174332|Q8NBF1|GLIS1;GLIS1|p.H410Ifs*53|1|0.33|ENSG00000174332|chr1:53514755-53514755|G/-|frameshift_variant;ENSG00000174332|ENST00000628545|GLIS1 nc|ENSG00000174332|Q8NBF1|GLIS1 nc|ENSG00000174332|Q8NBF1|GLIS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7731323242188 2 543.756735 1085.49892 NaN NaN NaN NaN NaN NaN NaN 139.05 1 139.05 138.55 139.55 0 0 0 0 0.22583 1 27627 27627 13.906 0.39817 1 44966 6343 29929 29949 44237 44237 -0.04041233529642341 TDSIGNKDFP 10 Unmodified _TDSIGNKDFP_ 0 0 0 ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;ZFHX4|p.R2647Gfs*44|1|0.25|ENSG00000091656|chr8:76854854-76854854|A/-|frameshift_variant;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.D2246*|1|0.34|ENSG00000091656|chr8:76853650-76853651|-/T|frameshift_variant;ZFHX4|p.P2056Hfs*26|1|0.19|ENSG00000091656|chr8:76853081-76853084|CCTC/-|frameshift_variant;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ZFHX4|p.I2143Nfs*7|1|0.31|ENSG00000091656|chr8:76853343-76853344|-/A|frameshift_variant;ZFHX4|p.P2057Hfs*26|2|0.17|ENSG00000091656|chr8:76853084-76853084|C/-|frameshift_variant;ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant;ZFHX4|p.L1719Cfs*6|1|0.13|ENSG00000091656|chr8:76852073-76852073|T/-|frameshift_variant;ZFHX4|p.Q1674Afs*4|1|0.14|ENSG00000091656|chr8:76851934-76851935|-/A|frameshift_variant;ZFHX4|p.H1565Tfs*5|1|0.28|ENSG00000091656|chr8:76851613-76851613|T/-|frameshift_variant;ZFHX4|p.K1442Nfs*10|1|0.18|ENSG00000091656|chr8:76851241-76851241|A/-|frameshift_variant;ZFHX4|p.V1343Sfs*4|1|0.08|ENSG00000091656|chr8:76850945-76850946|-/A|frameshift_variant;ZFHX4|p.K1867Nfs*7|1|0.09|ENSG00000091656|chr8:76852518-76852518|A/-|frameshift_variant;ENST00000458716.2_1_8:77616323-77620415:+|nuORF;nc|ENSG00000091656|Q86UP3-3|ZFHX4 ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7754516601562 2 547.261653 1092.50875 -0.40365 -0.0002209 0.80869 0.00044257 0.40505 0.00022167 547.2619962923743 23.075 0.29953 21.286 21.059 21.358 -1.7886 14 8 2 0 0 0 0.85223 1 3697 3697 13.042 13.042 1 537090 44967 1815 29930 29950 44238 44238 -0.03380045524272646 TDSNQEFFY 9 Unmodified _TDSNQEFFY_ 0 0 0 ENST00000379277.6_1_20:5080870-5080996:-|nuORF ENST00000379277.6_1_20:5080870-5080996:-|nuORF ENST00000379277.6_1_20:5080870-5080996:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3135986328125 2 575.738011 1149.46147 0.15683 9.0296E-05 -0.28779 -0.00016569 -0.13095 -7.5394E-05 576.2393955789424 95.534 0.51838 95.534 95.318 95.836 0 20 14 3 0 0 0 0.86532 1 18731 18731 8.5933 0 1 1199100 44968 9293 29931 29951 44239 44239 -0.10728324795263688 TDSPGTASPS 10 Unmodified _TDSPGTASPS_ 0 0 0 ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3;nc|ENSG00000136636|Q9Y597-3|KCTD3 ENSG00000136636|ENST00000259154|KCTD3 ENSG00000136636|ENST00000259154|KCTD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2288818359375 2 460.203804 918.393055 NaN NaN NaN NaN NaN NaN NaN 27.776 1 27.776 27.276 28.276 0 0 0 0 0.22588 1 4911 4911 9.3831 0.035688 1 44969 4025 29932 29952 44240 44240 -0.06940569375126415 TDSRVSPAS 9 Unmodified _TDSRVSPAS_ 0 0 0 ENST00000468963.1_1_9:139301473-139302406:-|nuORF;nc|ENSG00000165689|Q96C92-4|ENTR1;nc|ENSG00000165689|Q96C92-3|ENTR1;nc|ENSG00000165689|Q96C92-2|ENTR1;ENSG00000165689|ENST00000357365|ENTR1 ENST00000468963.1_1_9:139301473-139302406:-|nuORF ENST00000468963.1_1_9:139301473-139302406:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22845458984375 2 460.227613 918.440674 NaN NaN NaN NaN NaN NaN NaN 22.27 1 20.796 20.296 21.296 -1.4742 0 0 0 0.23508 1 3799 3799 18.146 5.1039 1 44970 5652 29933 29953 44241 44241 -0.021808703842793875 TDSSDDDEEES 11 Unmodified _TDSSDDDEEES_ 0 0 0 REV__sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1 REV__sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.019287109375 4 307.854746 1227.38988 -0.67027 -0.00020635 0.12973 3.9939E-05 -0.54053 -0.00016641 307.85507595223925 6.8468 1.2044 5.8022 5.4446 6.649 -1.0446 60 34 2 0 0 0 0.96228 1 494 494 0 0 1 501180 + 44971 24702 29934 29954 44242 44242 -0.21471953801096788 TDSSMTSQAPG 11 Unmodified _TDSSMTSQAPG_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2767333984375 2 541.226953 1080.43935 NaN NaN NaN NaN NaN NaN NaN 58.682 1 58.682 58.182 59.182 0 0 0 0 0.224 1 11234 11234 13.042 0.51092 1 + 44972 18720 29935 29955 44243 44243 -0.0976487253533378 TDSSTTIAYK 10 Unmodified _TDSSTTIAYK_ 0 0 0 REV__ENST00000521980.1_1_8:124096343-124109714:+|nuORF REV__ENST00000521980.1_1_8:124096343-124109714:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7711791992188 2 543.769311 1085.52407 0.14353 7.8045E-05 1.2429 0.00067583 1.3864 0.00075388 543.7699900254216 26.679 1.1695 24.757 24.02 25.19 -1.9222 58 32 2 0 0 0 0.67319 1 4322 4322 13.906 2.4113 1 1279400 + 44973 17269 29936 29956 44244 44244 -0.015271787271103676 TDSSYKES 8 Unmodified _TDSSYKES_ 0 0 0 LTN1|p.G1459Rfs*7|1|0.05|ENSG00000198862|chr21:28941327-28941328|-/T|frameshift_variant;LTN1|p.V1458Efs*10|1|0.05|ENSG00000198862|chr21:28941329-28941330|-/TATGCTT|frameshift_variant;ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1 LTN1|p.G1459Rfs*7|1|0.05|ENSG00000198862|chr21:28941327-28941328|-/T|frameshift_variant LTN1|p.G1459Rfs*7|1|0.05|ENSG00000198862|chr21:28941327-28941328|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23028564453125 2 458.698355 915.382156 0.21536 9.8783E-05 -1.639 -0.00075179 -1.4236 -0.00065301 458.6985561444252 19.62 0.44735 19.62 19.344 19.791 0 15 12 2 0 0 0 0.97966 1 3216 3216 11.64 3.047 1 206130 44974 7511 29937 29957 44245 44245 -0.07891971749415916 TDSTEFDK 8 Unmodified _TDSTEFDK_ 0 0 0 REV__BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant REV__BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 944.4118041992188 1 942.405083 941.397806 0.29306 0.00027619 -0.20312 -0.00019142 0.089944 8.4764E-05 942.4048094074599 38.3 1.0995 35.858 35.38 36.479 -2.4419 64 30 3 0 0 0 0.69713 1 6801 6801 13.508 0 1 5341100 + 44975 13203 29938 29958 44246 44246 -0.07523685232365551 TDSTGTHSLY 10 Unmodified _TDSTGTHSLY_ 0 0 0 ENSG00000116991|ENST00000674635|SIPA1L2;ENSG00000105738|ENST00000222345|SIPA1L3;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant;SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1 ENSG00000116991|ENST00000674635|SIPA1L2;ENSG00000105738|ENST00000222345|SIPA1L3;nc|ENSG00000197555|O43166-3|SIPA1L1;SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant ENSG00000105738|ENST00000222345|SIPA1L3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2793579101562 2 541.24346 1080.47237 NaN NaN NaN NaN NaN NaN NaN 38.968 1 36.526 36.026 37.026 -2.4419 0 0 0 0.10244 1 6948 6948 62.573 26.528 1 44976 2339;7377;2967;7695 29939 29959 44247 44247 -0.06464922420968833 TDSVKPSPM 9 Unmodified _TDSVKPSPM_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000025008;REV__ENSG00000101162|ENST00000217133|TUBB1 REV__CON__ENSEMBL:ENSBTAP00000025008 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.236572265625 2 481.236593 960.458632 0.14098 6.7843E-05 -0.15715 -7.5627E-05 -0.016173 -7.7831E-06 481.2365003535211 32.767 0.69718 30.537 30.259 30.956 -2.2305 22 19 2 0 0 0 0.39189 1 5989 5989 26.268 3.5319 1 569530 + + 44977 13509;14765 29940 29960 44248 44248 -0.023178714537721135 TDSVKPSPM 9 Unmodified _TDSVKPSPM_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000025008;REV__ENSG00000101162|ENST00000217133|TUBB1 REV__CON__ENSEMBL:ENSBTAP00000025008 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2362365722656 2 481.236593 960.458632 0.27789 0.00013373 -0.41644 -0.00020041 -0.13855 -6.6677E-05 481.2363543073945 32.673 0.55774 30.527 30.237 30.795 -2.1468 20 15 2 0 0 0 0.44932 1 5681 5681 22.736 3.4793 1 517190 + + 44978 13509;14765 29940 29960 44249 44249 -0.023178714537721135 TDSVKPSPM 9 Unmodified _TDSVKPSPM_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000025008;REV__ENSG00000101162|ENST00000217133|TUBB1 REV__CON__ENSEMBL:ENSBTAP00000025008 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2364501953125 2 481.236593 960.458632 0.37368 0.00017983 -0.40986 -0.00019724 -0.036181 -1.7412E-05 481.23644226214935 32.724 0.8062 30.576 30.171 30.977 -2.1483 26 22 2 0 0 0 0.44932 1 5674 5674 22.736 5.6234 1 673620 + + 44979 13509;14765 29940 29960 44250 44250 -0.023178714537721135 TDSVLWIWLLF 11 Unmodified _TDSVLWIWLLF_ 0 0 0 REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5 REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2456970214844 3 464.923585 1391.74892 0.15174 7.0547E-05 -0.89262 -0.000415 -0.74088 -0.00034445 464.92310645444803 31.978 0.34329 31.978 31.809 32.153 0 17 9 2 0 0 0 0.80759 2 5772 5772;5778 2.6312 0.70373 1 703400 + 44980 15600 29941 29961 44251;44252 44251 0.06871975813896825 TDSYPVGKL 9 Unmodified _TDSYPVGKL_ 0 0 0 nc|ENSG859|P60507|ERVFC1 nc|ENSG859|P60507|ERVFC1 nc|ENSG859|P60507|ERVFC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2574157714844 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 70.599 1 70.599 70.099 71.099 0 0 0 0 0.16473 1 13675 13675 0.87518 0.19379 1 44981 12670 29942 29962 44253 44253 0.012100613150096251 TDTAVTYW 8 Unmodified _TDTAVTYW_ 0 0 0 REV__IL6ST|p.S731Lfs*57|1|0.13|ENSG00000134352|chr5:55941649-55941649|C/-|frameshift_variant REV__IL6ST|p.S731Lfs*57|1|0.13|ENSG00000134352|chr5:55941649-55941649|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7239685058594 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 94.984 1 90.935 90.435 91.435 -4.0496 0 0 0 0.19954 1 18617 18617 24.674 5.2349 1 + 44982 23656 29943 29963 44254 44254 -0.05078487127468634 TDTGVSLQTY 10 Unmodified _TDTGVSLQTY_ 0 0 0 ENSG00000130513|ENST00000252809|GDF15 ENSG00000130513|ENST00000252809|GDF15 ENSG00000130513|ENST00000252809|GDF15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7811889648438 2 542.761486 1083.50842 0.25349 0.00013759 -0.35478 -0.00019256 -0.10129 -5.4974E-05 542.7612808286754 87.464 0.73107 87.464 87.152 87.883 0 45 20 3 0 0 0 0.71778 1 17090 17090 9.3831 0.63772 1 5365900 44983 3614 29944 29964 44255 44255 -0.029994652441246217 TDTKQRKAA 9 Unmodified _TDTKQRKAA_ 0 0 0 REV__ENSG00000250782|ENST00000512227|TAF11L14 REV__ENSG00000250782|ENST00000512227|TAF11L14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 509.7323913574219 2 509.78563 1017.55671 0.083348 4.249E-05 -0.90995 -0.00046388 -0.8266 -0.00042139 509.78533063745766 14.163 0.31363 14.163 13.965 14.279 0 10 8 2 0 0 0 0.62649 1 2112 2112 0.029283 0.021006 1 607760 + 44984 19820 29945 29965 44256 44256 0.04863073186413658 TDTKTGDHGY 10 Unmodified _TDTKTGDHGY_ 0 0 0 REV__ENSG00000003509|ENST00000002125|NDUFAF7 REV__ENSG00000003509|ENST00000002125|NDUFAF7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7741088867188 2 547.741085 1093.46762 0.19527 0.00010696 -0.36412 -0.00019944 -0.16885 -9.2485E-05 547.7407163649153 81.76 1.0342 78.203 77.689 78.723 -3.557 83 29 4 0 0 0 0.744 1 16067 16067 6.7232 0 1 12859000 + 44985 13830 29946 29966 44257 44257 -0.07537806563732374 TDTLCSLQSP 10 Unmodified _TDTLCSLQSP_ 0 0 0 ENST00000488258.5_1_7:151265789-151372578:-|nuORF ENST00000488258.5_1_7:151265789-151372578:-|nuORF ENST00000488258.5_1_7:151265789-151372578:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2813110351562 2 532.750064 1063.48558 -0.056277 -2.9981E-05 -0.31915 -0.00017003 -0.37543 -0.00020001 532.7498503383349 45.059 0.41703 42.312 42.134 42.551 -2.7475 19 11 3 0 0 0 0.75233 1 8163 8163 29.082 0 1 981700 44986 10481 29947 29967 44258 44258 -0.0436280763326522 TDTLKPKVPVY 11 Unmodified _TDTLKPKVPVY_ 0 0 0 REV__ENSG00000204548|ENST00000376314|DEFB121 REV__ENSG00000204548|ENST00000376314|DEFB121 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.75 2 630.863546 1259.71254 NaN NaN NaN NaN NaN NaN NaN 39.411 1 36.969 36.469 37.469 -2.4419 0 0 0 0.23264 1 7039 7039 6.2058 0 1 + 44987 19545 29948 29968 44259 44259 0.09307098917201984 TDTLTEYS 8 Unmodified _TDTLTEYS_ 0 0 0 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant;ADGRL3|p.W832Lfs*13|1|0.39|ENSG00000150471|chr4:61948167-61948168|-/T|frameshift_variant;ADGRL3|p.Y966Lfs*9|1|0.19|ENSG00000150471|chr4:61983464-61983465|-/T|frameshift_variant;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;ADGRL3|p.H1275Lfs*11|1|0.08|ENSG00000150471|chr4:62070322-62070322|A/-|frameshift_variant;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-3|ADGRL3;ADGRL3|p.P254Lfs*10|1|0.22|ENSG00000150471|chr4:61733117-61733117|C/-|frameshift_variant ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2592468261719 2 465.208555 928.402557 NaN NaN NaN NaN NaN NaN NaN 104.36 1 100.14 99.642 100.64 -4.2183 0 0 0 0.21452 1 20527 20527 13.508 0 1 44988 82 29949 29969 44260 44260 -0.06450801089613378 TDTLTQVK 8 Unmodified _TDTLTQVK_ 0 0 0 PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1 PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75201416015625 2 453.250557 904.486562 0.032182 1.4587E-05 -0.28754 -0.00013033 -0.25536 -0.00011574 453.25036723649913 59.012 0.63927 55.76 55.488 56.127 -3.2517 43 17 3 0 0 0 0.40661 1 11030 11030 32.117 0 1 3656500 44989 973 29950 29970 44261 44261 0.030497747979552514 TDTQLPLIY 9 Unmodified _TDTQLPLIY_ 0 0 0 REV__ENSG00000187720|ENST00000261862|THSD4 REV__ENSG00000187720|ENST00000261862|THSD4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2736206054688 2 532.28714 1062.55973 0.094357 5.0225E-05 0.27355 0.00014561 0.36791 0.00019583 532.2872150514914 149.62 0.71472 149.62 149.23 149.94 0 57 19 4 0 0 0 0.12612 1 29935 29935 47.594 3.822 1 11291000 + 44990 19106 29951 29971 44262 44262 0.03094903520582193 TDTQLPLIY 9 Unmodified _TDTQLPLIY_ 0 0 0 REV__ENSG00000187720|ENST00000261862|THSD4 REV__ENSG00000187720|ENST00000261862|THSD4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2758178710938 2 532.28714 1062.55973 0.44813 0.00023854 -0.073222 -3.8975E-05 0.37491 0.00019956 532.2870002035962 154.95 0.92567 149.7 149.33 150.25 -5.2526 79 25 4 0 0 0 0.053942 2 30044 30044;30135 69.105 0 1 11503000 + 44991 19106 29951 29971 44263;44264 44263 0.03094903520582193 TDTQLPLIY 9 Unmodified _TDTQLPLIY_ 0 0 0 REV__ENSG00000187720|ENST00000261862|THSD4 REV__ENSG00000187720|ENST00000261862|THSD4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.28714 1062.55973 0.094357 5.0225E-05 0.27355 0.00014561 0.36791 0.00019583 532.2872150514914 149.62 0.71472 149.62 149.23 149.94 0 -0.12745 0.0002334 NaN 69.105 57 19 4 NaN NaN NaN NaN 0 NaN NaN 0 11291000 + 44992 19106 29951 29971 0.03094903520582193 TDTQLPLIY 9 Unmodified _TDTQLPLIY_ 0 0 0 REV__ENSG00000187720|ENST00000261862|THSD4 REV__ENSG00000187720|ENST00000261862|THSD4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.28714 1062.55973 0.19686 0.00010478 0.13815 7.3534E-05 0.335 0.00017832 532.2871257003703 154.56 1.1209 149.78 149.11 150.23 -4.7791 0.035922 8.9255E-05 NaN 69.105 86 31 4 NaN NaN NaN NaN 0 NaN NaN 0 19678000 + 44993 19106 29951 29971 0.03094903520582193 TDTQLPLIY 9 Unmodified _TDTQLPLIY_ 0 0 0 REV__ENSG00000187720|ENST00000261862|THSD4 REV__ENSG00000187720|ENST00000261862|THSD4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.28714 1062.55973 0.52858 0.00028136 -0.14004 -7.454E-05 0.38855 0.00020682 532.2869529674897 155.17 1.0748 149.88 149.29 150.36 -5.2854 0.13794 -0.00020689 NaN 69.105 74 29 3 NaN NaN NaN NaN 0 NaN NaN 0 13543000 + 44994 19106 29951 29971 0.03094903520582193 TDTQLPLIY 9 Unmodified _TDTQLPLIY_ 0 0 0 REV__ENSG00000187720|ENST00000261862|THSD4 REV__ENSG00000187720|ENST00000261862|THSD4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.28714 1062.55973 0.44813 0.00023854 -0.073222 -3.8975E-05 0.37491 0.00019956 532.2870002035962 154.95 0.92567 149.7 149.33 150.25 -5.2526 -0.046412 -0.00013576 NaN 69.105 79 25 4 NaN NaN NaN NaN 0 NaN NaN 0 11503000 + 44995 19106 29951 29971 0.03094903520582193 TDTSLTEEQA 10 Unmodified _TDTSLTEEQA_ 0 0 0 nc|ENSG00000155657|Q8WZ42-6|TTN;TTN|p.P1407Lfs*5|1|0.18|ENSG00000155657|chr2:178777964-178777965|-/GA|frameshift_variant;TTN|p.L1709Tfs*7|2|0.3|ENSG00000155657|chr2:178776739-178776740|-/T|frameshift_variant;TTN|p.V1964Wfs*14|1|0.32|ENSG00000155657|chr2:178775975-178775975|T/-|frameshift_variant;TTN|p.N2114Mfs*25|1|0.05|ENSG00000155657|chr2:178775523-178775523|T/-|frameshift_variant;TTN|p.D2189Tfs*17|1|0.23|ENSG00000155657|chr2:178775147-178775147|T/-|frameshift_variant;TTN|p.S2859Qfs*30|1|0.21|ENSG00000155657|chr2:178770127-178770127|G/-|frameshift_variant;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.M4154Nfs*4|1|0.21|ENSG00000155657|chr2:178739821-178739822|-/T|frameshift_variant;TTN|p.T4116Sfs*25|1|0.04|ENSG00000155657|chr2:178739937-178739938|-/CTATTATATATGAGGAA|frameshift_variant;TTN|p.P4036Qfs*14|1|0.19|ENSG00000155657|chr2:178740175-178740175|G/-|frameshift_variant;TTN|p.I3592Lfs*36|1|0.25|ENSG00000155657|chr2:178741508-178741508|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant nc|ENSG00000155657|Q8WZ42-6|TTN;ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7890014648438 2 547.746033 1093.47751 NaN NaN NaN NaN NaN NaN NaN 51.627 1 48.745 48.245 49.245 -2.8824 0 0 0 0.22535 1 9811 9811 20.454 4.3045 1 44996 5053;26536;12390 29952 29972 44265 44265 -0.06548663349030903 TDTTVPHC 8 Unmodified _TDTTVPHC_ 0 0 0 ENST00000422735.1_1_9:88989919-88990300:-|nuORF ENST00000422735.1_1_9:88989919-88990300:-|nuORF ENST00000422735.1_1_9:88989919-88990300:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22711181640625 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 67.748 1 64.251 63.751 64.751 -3.4965 0 0 0 0.21486 1 12716 12716 9.3474 0 1 44997 9683 29953 29973 44266 44266 -0.0714728669345277 TDTVPLTPS 9 Unmodified _TDTVPLTPS_ 0 0 0 REV__POM121L2|p.P496Qfs*17|1|0.14|ENSG00000158553|chr6:27310684-27310684|G/-|frameshift_variant REV__POM121L2|p.P496Qfs*17|1|0.14|ENSG00000158553|chr6:27310684-27310684|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.250732421875 2 465.742565 929.470577 0.11521 5.366E-05 -0.20758 -9.668E-05 -0.092367 -4.3019E-05 465.74246492057637 95.225 0.73083 91.034 90.614 91.345 -4.1911 38 20 2 0 0 0 0.79204 1 18113 18113 3.9444 0 1 2643400 + 44998 17338 29954 29974 44267 44267 0.003020685610408691 TDVDDLIFK 9 Unmodified _TDVDDLIFK_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2615356445312 2 533.276772 1064.53899 0.088792 4.7351E-05 2.1722 0.0011584 2.261 0.0012057 533.2780572648004 21.035 0.13575 21.035 20.951 21.087 0 5 3 2 0 0 0 0.84208 1 3505 3505 7.2892 0 1 231770 44999 3551 29955 29975 44268 44268 0.009303131409069465 TDVEKIQE 8 Unmodified _TDVEKIQE_ 0 0 0 ENSG00000134853|ENST00000257290|PDGFRA;ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA;PDGFRA|p.N780Tfs*17|1|0.45|ENSG00000134853|chr4:54285382-54285382|A/-|frameshift_variant ENSG00000134853|ENST00000257290|PDGFRA ENSG00000134853|ENST00000257290|PDGFRA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24273681640625 2 481.245472 960.476391 0.10602 5.102E-05 -0.47546 -0.00022881 -0.36944 -0.00017779 481.24457546735755 61.033 0.38508 57.799 57.689 58.074 -3.2347 17 10 3 0 0 0 8448 1 11418 11418 0.25148 0 1 668460 45000 3877 29956 29976 44269 44269 -0.005428329272831434 TDVFIKMDL 9 Unmodified _TDVFIKMDL_ 0 0 0 REV__nc|ENSG00000198276|Q9NWZ5-3|UCKL1 REV__nc|ENSG00000198276|Q9NWZ5-3|UCKL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2838134765625 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 64.838 1 61.555 61.055 62.055 -3.2832 0 0 0 0.22621 1 12178 12178 15.847 0 1 + 45001 19403 29957 29977 44270 44270 0.015478476485213832 TDVFKDTM 8 Unmodified _TDVFKDTM_ 0 0 0 REV__nc|ENSG00000005471|P21439-3|ABCB4 REV__nc|ENSG00000005471|P21439-3|ABCB4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7235412597656 2 478.723318 955.432083 -0.024174 -1.1573E-05 -0.18247 -8.7351E-05 -0.20664 -9.8924E-05 478.72330885316893 80.608 0.97417 76.769 76.218 77.192 -3.8392 72 27 4 0 0 0 0.19607 1 15354 15354 46.021 15.384 1 9759400 + 45002 13859 29958 29978 44271 44271 -0.04741560345109974 TDVGLHRL 8 Unmodified _TDVGLHRL_ 0 0 0 PCDH9|p.A818Cfs*77|1|0.16|ENSG00000184226|chr13:67225989-67225990|-/A|frameshift_variant;nc|ENSG00000184226|Q9HC56-2|PCDH9;ENSG00000184226|ENST00000377865|PCDH9 PCDH9|p.A818Cfs*77|1|0.16|ENSG00000184226|chr13:67225989-67225990|-/A|frameshift_variant PCDH9|p.A818Cfs*77|1|0.16|ENSG00000184226|chr13:67225989-67225990|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.03973388671875 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 35.24 1 32.846 32.346 33.346 -2.3938 0 0 0 0.21486 1 6487 6487 1.6526 0 1 45003 6898 29959 29979 44272 44272 0.044843204745689036 TDVGMQQPA 9 Unmodified _TDVGMQQPA_ 0 0 0 nc|ENSG00000156925|O60481-2|ZIC3 nc|ENSG00000156925|O60481-2|ZIC3 nc|ENSG00000156925|O60481-2|ZIC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1470031738281 3 316.148137 945.422581 NaN NaN NaN NaN NaN NaN NaN 99.515 1 95.558 95.058 96.058 -3.9564 0 0 0 0.23508 1 19106 19106 2.4985 0.65425 1 45004 12394 29960 29980 44273 44273 -0.052313286306457485 TDVGRITL 8 Unmodified _TDVGRITL_ 0 0 0 REV__SCN5A|p.Y1009Tfs*136|3|0.35|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant REV__SCN5A|p.Y1009Tfs*136|3|0.35|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2358703613281 2 437.753267 873.491981 0.15063 6.5941E-05 -0.33735 -0.00014768 -0.18671 -8.1735E-05 437.75297666371546 67.438 0.37532 64.111 63.9 64.275 -3.3268 14 10 2 0 0 0 0.44257 1 12672 12672 34.402 7.5181 1 754280 + 45005 18872 29961 29981 44274 44274 0.050174983804254225 TDVKAVLGT 9 Unmodified _TDVKAVLGT_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.N1135*|1|0.36|ENSG00000175054|chr3:142542712-142542713|-/A|frameshift_variant;ATR|p.S927Qfs*4|1|0.34|ENSG00000175054|chr3:142553254-142553255|-/A|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 452.52587890625 2 452.260925 902.507297 NaN NaN NaN NaN NaN NaN NaN 87.876 1 83.88 83.38 84.38 -3.9953 0 0 0 0.18691 1 16736 16736 11.749 5.2624 1 45006 6383 29962 29982 44275 44275 0.05214365177630498 TDVLNDNW 8 Unmodified _TDVLNDNW_ 0 0 0 REV__ENSG00000165434|ENST00000298198|PGM2L1 REV__ENSG00000165434|ENST00000298198|PGM2L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2664489746094 2 488.722164 975.429775 -0.16916 -8.2672E-05 0.3296 0.00016108 0.16044 7.841E-05 488.7222996780578 39.141 1.2969 36.592 36.157 37.454 -2.5491 129 36 5 0 0 0 0.67861 1 7217 7217 17.113 0.1706 1 177600000 + 45007 17769 29963 29983 44276 44276 -0.05892272758569561 TDVPEVLFY 9 Unmodified _TDVPEVLFY_ 0 0 0 REV__nc|ENSG00000067141|Q92859-3|NEO1 REV__nc|ENSG00000067141|Q92859-3|NEO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2796020507812 2 541.773865 1081.53318 0.36155 0.00019588 -1.3654 -0.00073976 -1.0039 -0.00054388 542.274925978769 29.542 0.76468 29.542 28.985 29.749 0 26 21 2 0 0 0 0.70873 1 5296 5296 18.135 0 1 1260700 + 45008 14208 29964 29984 44277 44277 -0.004327853707536633 TDVRFVTQL 9 Unmodified _TDVRFVTQL_ 0 0 0 ENST00000487863.5_1_19:53057832-53058279:+|nuORF ENST00000487863.5_1_19:53057832-53058279:+|nuORF ENST00000487863.5_1_19:53057832-53058279:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201171875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 124.48 1 124.48 123.98 124.98 0 0 0 0 0.23508 1 24546 24546 4.5289 0 1 45009 10477 29965 29985 44278 44278 0.0461712798901317 TDVRIESAA 9 Unmodified _TDVRIESAA_ 0 0 0 REV__ENSG00000139988|ENST00000551171|RDH12 REV__ENSG00000139988|ENST00000551171|RDH12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25091552734375 2 481.251089 960.487624 1.1091 0.00053375 -0.90467 -0.00043537 0.20443 9.8383E-05 481.2505970223823 26.544 0.37486 24.762 24.552 24.926 -1.7821 14 10 2 0 0 0 0.52396 1 4709 4709 18.146 2.2992 1 929680 + 45010 16556 29966 29986 44279 44279 0.005799891668630153 TDVSGCSSDS 10 Unmodified _TDVSGCSSDS_ 0 0 0 ENSG00000268041|ENST00000597630|ERFL ENSG00000268041|ENST00000597630|ERFL ENSG00000268041|ENST00000597630|ERFL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72882080078125 2 479.176929 956.339305 NaN NaN NaN NaN NaN NaN NaN 74.602 1 70.926 70.426 71.426 -3.6764 0 0 0 2.8426 1 14104 14104 0.20733 0.14334 1 45011 7992 29967 29987 44280 44280 -0.14061109869146549 TDVSHQYP 8 Unmodified _TDVSHQYP_ 0 0 0 REV__SMAD9|p.P227Q|1|0.29|ENSG00000120693|chr13:36867374-36867374|G/T|missense_variant REV__SMAD9|p.P227Q|1|0.29|ENSG00000120693|chr13:36867374-36867374|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.14697265625 3 316.147013 945.41921 NaN NaN NaN NaN NaN NaN NaN 50.792 1 47.747 47.247 48.247 -3.0453 0 0 0 0.21486 1 9314 9314 3.5965 0 1 + 45012 15628 29968 29988 44281 44281 -0.055682554129930395 TDVSLARL 8 Unmodified _TDVSLARL_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2348327636719 2 437.753267 873.491981 0.26244 0.00011489 0.077159 3.3777E-05 0.3396 0.00014866 437.75325284520574 67.585 0.38699 64.088 63.924 64.311 -3.4965 16 10 2 0 0 0 0.64118 1 12693 12693 24.021 1.2843 1 939690 45013 4590 29969 29989 44282 44282 0.050174983804254225 TDVSLMQAP 9 Unmodified _TDVSLMQAP_ 0 0 0 REV__ENSG00000146216|ENST00000259750|TTBK1 REV__ENSG00000146216|ENST00000259750|TTBK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2469177246094 2 481.236593 960.458632 0.021375 1.0286E-05 -0.11105 -5.3441E-05 -0.089674 -4.3154E-05 481.23667380436785 30.535 0.52114 30.535 30.272 30.793 0 22 14 2 0 0 0 0.54076 2 5471 5471;5509 17.113 0.1706 1 794770 + 45014 16876 29970 29990 44283;44284 44283 -0.02317871453783482 TDVSLMQAP 9 Unmodified _TDVSLMQAP_ 0 0 0 REV__ENSG00000146216|ENST00000259750|TTBK1 REV__ENSG00000146216|ENST00000259750|TTBK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.236572265625 2 481.236593 960.458632 0.37368 0.00017983 -0.40986 -0.00019724 -0.036181 -1.7412E-05 481.23644226214935 32.724 0.8062 30.576 30.171 30.977 -2.1483 26 22 2 0 0 0 0.58804 1 5721 5721 13.906 2.2658 1 673620 + 45015 16876 29970 29990 44285 44285 -0.02317871453783482 TDVSSPRGP 9 Unmodified _TDVSSPRGP_ 0 0 0 REV__ENST00000532338.5_1_8:145534845-145537990:+|nuORF REV__ENST00000532338.5_1_8:145534845-145537990:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23028564453125 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 20.816 1 19.342 18.842 19.842 -1.4742 0 0 0 0.18489 1 3495 3495 0.37959 0 1 + 45016 18943 29971 29991 44286 44286 -0.014885665216525013 TDVTLQTK 8 Unmodified _TDVTLQTK_ 0 0 0 nc|ENSG00000164808|Q14159-3|SPIDR;ENST00000524141.5_1_8:48173550-48625457:+|nuORF;nc|ENSG00000164808|Q14159-2|SPIDR;ENSG00000164808|ENST00000297423|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7521667480469 2 453.250557 904.486562 0.06416 2.908E-05 -0.31688 -0.00014363 -0.25272 -0.00011455 453.25038713576816 59.084 0.62993 55.879 55.538 56.168 -3.2052 41 17 3 0 0 0 0.27274 1 11064 11064 38.151 2.107 1 4450800 45017 12427 29972 29992 44287 44287 0.0304977479796662 TDVVEAKSL 9 Unmodified _TDVVEAKSL_ 0 0 0 nc|ENSG00000140479|P29122-3|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;nc|ENSG00000140479|P29122-6|PCSK6 nc|ENSG00000140479|P29122-3|PCSK6 nc|ENSG00000140479|P29122-3|PCSK6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76666259765625 2 481.263665 960.512776 0.11957 5.7542E-05 -1.8199 -0.00087588 -1.7004 -0.00081833 481.26306355452203 60.756 0.48535 57.442 57.154 57.64 -3.3139 17 13 2 0 0 0 0.52396 1 11312 11312 18.146 0 1 373310 45018 4304 29973 29993 44288 44288 0.030940439694290944 TDVVEAQSL 9 Unmodified _TDVVEAQSL_ 0 0 0 PCSK4|p.I240V|1|0.24|ENSG00000115257|chr19:1487278-1487278|T/C|missense_variant PCSK4|p.I240V|1|0.24|ENSG00000115257|chr19:1487278-1487278|T/C|missense_variant PCSK4|p.I240V|1|0.24|ENSG00000115257|chr19:1487278-1487278|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24383544921875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 61.092 1 57.722 57.222 58.222 -3.3694 0 0 0 0.21844 1 11385 11385 18.146 1.0335 1 45019 12766 29974 29994 44289 44289 -0.005428329272717747 TDVVNRLP 8 Unmodified _TDVVNRLP_ 0 0 0 REV__ENST00000474908.5_1_9:35813053-35813759:-|nuORF REV__ENST00000474908.5_1_9:35813053-35813759:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.238037109375 2 457.258717 912.50288 -0.12488 -5.7104E-05 0.15059 6.8857E-05 0.025703 1.1753E-05 457.25878984045323 82.731 0.83796 79.032 78.551 79.389 -3.6985 49 23 3 0 0 0 0.70344 1 15745 15745 18.135 3.5533 1 2907700 + 45020 22088 29975 29995 44290 44290 0.04312900754723614 TDVVRYLL 8 Unmodified _TDVVRYLL_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25848388671875 2 489.784567 977.554582 0.13799 6.7588E-05 -0.18081 -8.8557E-05 -0.042813 -2.0969E-05 489.78449549461686 130.92 0.46249 126.08 125.78 126.24 -4.8355 17 12 2 0 0 0 0.89552 1 25121 25121 4.756 0 1 1448400 45021 5956 29976 29996 44291 44291 0.06490644448626881 TDVWLAVDY 9 Unmodified _TDVWLAVDY_ 0 0 0 ENSG00000206579|ENST00000327381|XKR4 ENSG00000206579|ENST00000327381|XKR4 ENSG00000206579|ENST00000327381|XKR4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2628173828125 2 541.263665 1080.51278 0.20456 0.00011072 -0.090175 -4.8809E-05 0.11439 6.1915E-05 541.7657771961107 91.661 0.5575 87.853 87.548 88.106 -3.8083 29 15 3 0 0 0 0.62102 1 17553 17553 11.64 0.81637 1 2144500 45022 7675 29977 29997 44292 44292 -0.02425956030560883 TDWGALRT 8 Unmodified _TDWGALRT_ 0 0 0 ENST00000266771.9_1_12:129278576-129278744:-|nuORF ENST00000266771.9_1_12:129278576-129278744:-|nuORF ENST00000266771.9_1_12:129278576-129278744:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2344665527344 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 104.45 1 104.45 103.95 104.95 0 0 0 0 0.23487 1 20526 20526 0.12286 0.079078 1 45023 8376 29978 29998 44293 44293 -0.006559587964147795 TDWLGEKI 8 Unmodified _TDWLGEKI_ 0 0 0 tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1 tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1 tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25189208984375 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 74.235 1 70.641 70.141 71.141 -3.594 0 0 0 0.20568 1 14098 14098 20.871 0 1 45024 26300 29979 29999 44294 44294 0.00982078660570096 TDWNFHRKRY 10 Unmodified _TDWNFHRKRY_ 0 0 0 NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 474.7434387207031 3 474.905698 1421.69527 0.020308 9.6443E-06 -1.0897 -0.00051753 -1.0694 -0.00050788 474.90595970935925 54.619 1.4342 51.484 50.905 52.339 -3.1352 60 40 3 0 0 0 1.1284 1 10175 10175 3.5927 2.1852 1 14190000 45025 12698 29980 30000 44295 44295 0.001286161547568554 TDWNFHRKRY 10 Unmodified _TDWNFHRKRY_ 0 0 0 NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 474.905698 1421.69527 0.0057849 2.7473E-06 -1.4897 -0.00070748 -1.4839 -0.00070474 474.90592485482927 51.335 0.51862 51.335 51.165 51.684 0 -0.08559 -0.00015319 NaN 3.5927 28 14 3 NaN NaN NaN NaN 0 NaN NaN 0 8984900 45026 12698 29980 30000 0.001286161547568554 TDWNFHRKRY 10 Unmodified _TDWNFHRKRY_ 0 0 0 NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 474.905698 1421.69527 -0.25542 -0.0001213 -1.588 -0.00075414 -1.8434 -0.00087544 475.2379918352026 54.336 0.92989 51.452 50.942 51.872 -2.8837 0.031082 -0.00029315 NaN 3.5927 50 26 3 NaN NaN NaN NaN 0 NaN NaN 0 17115000 45027 12698 29980 30000 0.001286161547568554 TDWNFHRKRY 10 Unmodified _TDWNFHRKRY_ 0 0 0 NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant NOM1|p.L490Tfs*11|1|0.2|ENSG00000146909|chr7:156960003-156960004|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 474.905698 1421.69527 -0.026861 -1.2756E-05 -1.4628 -0.00069467 -1.4896 -0.00070743 474.9060581756348 54.55 1.0882 51.412 50.954 52.042 -3.1377 -0.0084459 -0.00011476 NaN 3.5927 53 30 3 NaN NaN NaN NaN 0 NaN NaN 0 12563000 45028 12698 29980 30000 0.001286161547568554 TDYDHWFGGF 10 Unmodified _TDYDHWFGGF_ 0 0 0 REV__ENSG00000133962|ENST00000256343|CATSPERB REV__ENSG00000133962|ENST00000256343|CATSPERB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.755126953125 2 622.753995 1243.49344 NaN NaN NaN NaN NaN NaN NaN 73.697 1 70.333 69.833 70.833 -3.3643 0 0 0 0.22588 1 14366 14366 6.7232 0.99131 1 + 45029 16185 29981 30001 44296 44296 -0.11856912321491109 TDYDPFLPLA 10 Unmodified _TDYDPFLPLA_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.31591796875 2 576.284597 1150.55464 0.073969 4.2627E-05 1.1592 0.00066804 1.2332 0.00071067 576.7876980663664 57.679 1.6056 54.474 53.829 55.434 -3.2052 54 45 2 0 0 0 0.57735 2 10745 10745;10771 20.454 0 1 1638200 45030 7178;12859 29982 30002 44297;44298 44297 -0.014614003420319932 TDYEGPGSP 9 Unmodified _TDYEGPGSP_ 0 0 0 TSC22D4|p.P40Rfs*36|1|0.45|ENSG00000166925|chr7:100477920-100477920|G/-|frameshift_variant;TSC22D4|p.P196Qfs*21|1|0.32|ENSG00000166925|chr7:100477452-100477452|G/-|frameshift_variant;ENST00000493217.1_1_7:100071895-100075661:-|nuORF;ENSG00000166925|ENST00000300181|TSC22D4 TSC22D4|p.P40Rfs*36|1|0.45|ENSG00000166925|chr7:100477920-100477920|G/-|frameshift_variant;ENSG00000166925|ENST00000300181|TSC22D4 ENSG00000166925|ENST00000300181|TSC22D4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5337829589844 2 461.693072 921.371591 NaN NaN NaN NaN NaN NaN NaN 41.939 1 39.22 38.72 39.72 -2.7191 0 0 0 0.22621 1 7836 7836 15.847 0 1 45031 26530;5766 29983 30003 44299 44299 -0.09223954403842072 TDYHVRVYA 9 Unmodified _TDYHVRVYA_ 0 0 0 FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21234130859375 3 375.189212 1122.54581 -0.59774 -0.00022427 0.72505 0.00027203 0.12731 4.7764E-05 375.18953141673524 58.435 0.47694 55.229 55.026 55.503 -3.2052 14 13 2 0 0 0 0.8799 1 10879 10879 2.4985 0 1 369950 45032 1517 29984 30004 44300 44300 -0.010563291878497694 TDYITEDLI 9 Unmodified _TDYITEDLI_ 0 0 0 tr|U7T277|U7T277_FUSNUPTSsystem,fructose-specificIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00577PE=4SV=1 tr|U7T277|U7T277_FUSNUPTSsystem,fructose-specificIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00577PE=4SV=1 tr|U7T277|U7T277_FUSNUPTSsystem,fructose-specificIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00577PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7890014648438 2 541.766237 1081.51792 0.53189 0.00028816 0.74648 0.00040442 1.2784 0.00069257 541.7665870548185 82.752 1.0759 82.752 82.396 83.472 0 94 30 5 0 0 0 0.46541 1 16152 16152 21.747 8.7042 1 85364000 45033 26348 29985 30005 44301 44301 -0.019576969586069026 TDYIYQGP 8 Unmodified _TDYIYQGP_ 0 0 0 nc|ENSG00000263715|P34998-5|CRHR1;nc|ENSG00000263715|P34998-3|CRHR1;nc|ENSG00000263715|P34998-4|CRHR1;ENSG00000120088|ENST00000314537|CRHR1;nc|ENSG00000263715|P34998-1|CRHR1 nc|ENSG00000263715|P34998-5|CRHR1 nc|ENSG00000263715|P34998-5|CRHR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72296142578125 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 22.891 1 21.103 20.603 21.603 -1.7886 0 0 0 0.21486 1 3656 3656 5.7604 0.52976 1 45034 3119 29986 30006 44302 44302 -0.05078487127468634 TDYQLYAS 8 Unmodified _TDYQLYAS_ 0 0 0 ENSG00000135801|ENST00000258281|TAF5L;TAF5L|p.L294Ffs*9|1|0.43|ENSG00000135801|chr1:229602287-229602287|G/-|frameshift_variant;nc|ENSG00000135801|O75529-2|TAF5L ENSG00000135801|ENST00000258281|TAF5L ENSG00000135801|ENST00000258281|TAF5L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2540588378906 2 480.71909 959.423627 0.15646 7.5212E-05 -0.12829 -6.1673E-05 0.028163 1.3539E-05 480.7210840487139 50.538 0.13293 50.538 50.471 50.604 0 5 3 2 0 0 0 1.0147 1 9567 9567 5.2307 0 1 301370 45035 3953 29987 30007 44303 44303 -0.0577079099009552 TDYRAIQL 8 Unmodified _TDYRAIQL_ 0 0 0 ENSG00000070476|ENST00000389709|ZXDC ENSG00000070476|ENST00000389709|ZXDC ENSG00000070476|ENST00000389709|ZXDC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2651062011719 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 55.274 1 52.139 51.639 52.639 -3.1352 0 0 0 0.23025 1 10211 10211 1.7423 0 1 45036 1432 29988 30008 44304 44304 0.023328834091330464 TDYTDSWAE 9 Unmodified _TDYTDSWAE_ 0 0 0 REV__ENST00000596510.5_1_19:48556252-48575644:-|nuORF REV__ENST00000596510.5_1_19:48556252-48575644:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7919921875 2 544.214369 1086.41418 0.09012 4.9045E-05 -1.7912 -0.00097479 -1.7011 -0.00092575 544.2138170033853 138.64 0.20628 133.68 133.5 133.7 -4.952 9 5 2 0 0 0 0.79204 1 26633 26633 16.942 2.104 1 1201300 + 45037 14996 29989 30009 44305 44305 -0.12556604066276122 TDYVLTIKAK 10 Unmodified _TDYVLTIKAK_ 0 0 0 REV__tr|U7T012|U7T012_FUSNUPeptidaseS8/S53domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00769PE=3SV=1 REV__tr|U7T012|U7T012_FUSNUPeptidaseS8/S53domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00769PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3355712890625 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 57.7 1 54.448 53.948 54.948 -3.2517 0 0 0 0.22588 1 10715 10715 10.824 0 1 + 45038 25260 29990 30010 44306 44306 0.09047140854363533 TDYVVRPSTG 10 Unmodified _TDYVVRPSTG_ 0 0 0 nc|ENSG00000170322|Q6P4R8-2|NFRKB;nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB nc|ENSG00000170322|Q6P4R8-2|NFRKB nc|ENSG00000170322|Q6P4R8-2|NFRKB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7816162109375 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 22.124 1 20.671 20.171 21.171 -1.4535 0 0 0 0.22588 1 3512 3512 13.042 0.51092 1 45039 12456 29991 30011 44307 44307 -0.0026405277033063612 TDYYHDSF 8 Unmodified _TDYYHDSF_ 0 0 0 REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6854858398438 2 524.206347 1046.39814 -0.45228 -0.00023709 1.7634 0.00092439 1.3111 0.0006873 524.2072780300078 54.022 0.20703 50.887 50.698 50.905 -3.1352 9 5 2 0 0 0 0.99494 1 9916 9916 13.508 4.1604 1 1224300 + 45040 14259 29992 30012 44308 44308 -0.12320265512539663 TDYYHDSF 8 Unmodified _TDYYHDSF_ 0 0 0 REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 524.206347 1046.39814 0.32043 0.00016797 1.8525 0.00097107 2.1729 0.001139 524.2071926830698 51.076 0.25059 51.076 50.914 51.165 0 0.12634 4.3257E-05 NaN 13.508 15 6 3 NaN NaN NaN NaN 0 NaN NaN 0 7216700 + 45041 14259 29992 30012 -0.12320265512539663 TDYYHDSF 8 Unmodified _TDYYHDSF_ 0 0 0 REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.206347 1046.39814 0.010203 5.3486E-06 1.5733 0.00082476 1.5835 0.00083011 524.2075855345192 54.024 0.20809 50.886 50.712 50.92 -3.1377 -0.063615 -0.00024937 NaN 13.508 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 632150 + 45042 14259 29992 30012 -0.12320265512539663 TEAACLIDDFY 11 Unmodified _TEAACLIDDFY_ 0 0 0 REV__nc|ENSG851|Q9QC07|ERVK-18_pol REV__nc|ENSG851|Q9QC07|ERVK-18_pol MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7756958007812 2 630.776279 1259.538 NaN NaN NaN NaN NaN NaN NaN 95.266 1 91.075 90.575 91.575 -4.1911 0 0 0 0.224 1 18179 18179 13.042 1.4022 1 + 45043 24335 29993 30013 44309 44309 -0.08138269290316202 TEAAIYQPS 9 Unmodified _TEAAIYQPS_ 0 0 0 nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1 nc|ENSG00000104413|Q6NXG1-2|ESRP1 nc|ENSG00000104413|Q6NXG1-2|ESRP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.274169921875 2 490.24019 978.465826 0.1282 6.2849E-05 0.093783 4.5976E-05 0.22198 0.00010883 490.24027383840007 39.109 0.7997 36.667 36.301 37.1 -2.4419 33 22 2 0 0 0 0.55979 1 7004 7004 15.847 2.8047 1 1710400 45044 2234 29994 30014 44310 44310 -0.024268155817139814 TEAAIYQPS 9 Unmodified _TEAAIYQPS_ 0 0 0 nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1 nc|ENSG00000104413|Q6NXG1-2|ESRP1 nc|ENSG00000104413|Q6NXG1-2|ESRP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 490.24019 978.465826 -0.084727 -4.1536E-05 0.8363 0.00040999 0.75157 0.00036845 490.2404192618144 39.072 0.87231 36.667 36.231 37.103 -2.4049 0.0325 0.00074374 NaN 15.847 57 24 3 NaN NaN NaN NaN 0 NaN NaN 0 1308000 45045 2234 29994 30014 -0.024268155817139814 TEAATRLSAY 10 Unmodified _TEAATRLSAY_ 0 0 0 ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H ENST00000476003.1_1_3:184084469-184086079:+|nuORF ENST00000476003.1_1_3:184084469-184086079:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2762451171875 2 541.77747 1081.54039 0.98472 0.0005335 -0.80112 -0.00043403 0.18359 9.9466E-05 541.7769938110847 23.171 0.70127 21.618 21.132 21.834 -1.5532 44 19 4 0 0 0 0.88533 1 3922 3922 8.7454 0 1 12642000 45046 5477 29995 30015 44311 44311 0.0028794722966267727 TEAAVSSFV 9 Unmodified _TEAAVSSFV_ 0 0 0 ENSG00000153292|ENST00000371253|ADGRF1;ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant;ADGRF1|p.S617Afs*12|1|0.14|ENSG00000153292|chr6:47009586-47009586|T/-|frameshift_variant ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.4183349609375 1 910.451639 909.444362 0.25289 0.00023025 -0.093899 -8.549E-05 0.15899 0.00014476 910.4513402721882 128.26 0.50853 123.63 123.44 123.94 -4.6292 25 13 2 0 0 0 0.1793 1 25333 25333 39.957 3.9131 1 2665600 45047 4966 29996 30016 44312 44312 -0.013982006104129141 TEAAVSSFV 9 Unmodified _TEAAVSSFV_ 0 0 0 ENSG00000153292|ENST00000371253|ADGRF1;ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant;ADGRF1|p.S617Afs*12|1|0.14|ENSG00000153292|chr6:47009586-47009586|T/-|frameshift_variant ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 910.451639 909.444362 0.36788 0.00033494 0.40725 0.00037078 0.77513 0.00070572 910.4514442413325 128.57 0.60724 123.75 123.45 124.06 -4.817 0.021105 0.00029613 NaN 39.957 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2543900 45048 4966 29996 30016 -0.013982006104129141 TEAAVSSFV 9 Unmodified _TEAAVSSFV_ 0 0 0 ENSG00000153292|ENST00000371253|ADGRF1;ADGRF1|p.S523Pfs*3|1|0.35|ENSG00000153292|chr6:47009868-47009868|A/-|frameshift_variant;ADGRF1|p.S617Afs*12|1|0.14|ENSG00000153292|chr6:47009586-47009586|T/-|frameshift_variant ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 910.451639 909.444362 0.30178 0.00027475 0.028706 2.6135E-05 0.33048 0.00030089 910.4512573844459 128.55 0.56332 123.81 123.45 124.01 -4.7408 0.081893 -4.8522E-05 NaN 39.957 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2729800 45049 4966 29996 30016 -0.013982006104129141 TEADLALRPP 10 Unmodified _TEADLALRPP_ 0 0 0 WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant;WNK4|p.V608Cfs*53|4|0.4|ENSG00000126562|chr17:42787852-42787852|G/-|frameshift_variant;WNK4|p.L778Sfs*157|1|0.58|ENSG00000126562|chr17:42794646-42794646|C/-|frameshift_variant;nc|ENSG00000126562|Q96J92-3|WNK4;WNK4|p.V1234*|1|0.28|ENSG00000126562|chr17:42796545-42796545|G/-|frameshift_variant;ENSG00000126562|ENST00000246914|WNK4;WNK4|p.R467Afs*194|2|0.56|ENSG00000126562|chr17:42785399-42785399|G/-|frameshift_variant WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant WNK4|p.S637Pfs*14|1|0.42|ENSG00000126562|chr17:42788172-42788173|TT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2808227539062 2 541.795663 1081.57677 0.45396 0.00024595 -1.255 -0.00067997 -0.80107 -0.00043402 541.7939672532057 39.525 0.097374 39.525 39.445 39.542 0 4 2 2 0 0 0 0.86261 1 7330 7330 10.824 4.6181 1 473010 45050 3437 29997 30017 44313 44313 0.03924824126352178 TEADSDDEV 9 Unmodified _TEADSDDEV_ 0 0 0 REV__ENSG00000169857|ENST00000306730|AVEN REV__ENSG00000169857|ENST00000306730|AVEN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25543212890625 2 490.688184 979.361815 0.10925 5.3607E-05 1.5112 0.00074154 1.6205 0.00079515 490.6908556568318 130.02 0.74921 125.38 125.08 125.83 -4.6359 65 20 4 0 0 0 0.74655 1 25620 25620 10.824 2.2306 1 4571000 + 45051 18122 29998 30018 44314 44314 -0.12869187199885346 TEADYEDDS 9 Unmodified _TEADYEDDS_ 0 0 0 ENSG00000164675|ENST00000324698|IQUB ENSG00000164675|ENST00000324698|IQUB ENSG00000164675|ENST00000324698|IQUB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2822265625 2 522.685641 1043.35673 0.36213 0.00018928 3.5839 0.0018732 3.946 0.0020625 523.186871072564 75.454 0.23457 75.454 75.344 75.578 0 11 6 3 0 0 0 0.8319 1 14654 14654 7.9102 1.187 1 1036300 45052 5561 29999 30019 44315 44315 -0.16321491062512905 TEADYQLH 8 Unmodified _TEADYQLH_ 0 0 0 ENSG00000154856|ENST00000355285|APCDD1 ENSG00000154856|ENST00000355285|APCDD1 ENSG00000154856|ENST00000355285|APCDD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2644958496094 2 488.722164 975.429775 0.16229 7.9317E-05 -0.0017432 -8.5195E-07 0.16055 7.8465E-05 488.72214588116015 39.109 1.5429 36.667 36.195 37.738 -2.4419 148 43 6 0 0 0 0.68128 1 6899 6899 16.942 3.4344 1 192660000 45053 5029 30000 30020 44316 44316 -0.0589227275858093 TEAEIAHIA 9 Unmodified _TEAEIAHIA_ 0 0 0 ENSG00000137312|ENST00000376389|FLOT1 ENSG00000137312|ENST00000376389|FLOT1 ENSG00000137312|ENST00000376389|FLOT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7232971191406 2 477.748182 953.481811 -0.40041 -0.0001913 0.4696 0.00022435 0.069189 3.3055E-05 477.7484038010592 61.006 0.80463 61.006 60.626 61.431 0 34 22 2 0 0 0 0.54354 1 11724 11724 16.942 4.4107 1 2744700 45054 4078 30001 30021 44317 44317 0.003208906551662949 TEAEIAHIA 9 Unmodified _TEAEIAHIA_ 0 0 0 ENSG00000137312|ENST00000376389|FLOT1 ENSG00000137312|ENST00000376389|FLOT1 ENSG00000137312|ENST00000376389|FLOT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7320556640625 2 477.748182 953.481811 0.051032 2.4381E-05 0.60011 0.0002867 0.65114 0.00031108 477.7483416925767 63.63 0.76447 60.633 60.285 61.05 -2.9975 39 21 3 0 0 0 0.22334 2 12299 12278;12299 36.044 5.8194 1 3595200 45055 4078 30001 30021 44318;44319 44319 0.003208906551662949 TEAEIAHIA 9 Unmodified _TEAEIAHIA_ 0 0 0 ENSG00000137312|ENST00000376389|FLOT1 ENSG00000137312|ENST00000376389|FLOT1 ENSG00000137312|ENST00000376389|FLOT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.748182 953.481811 0.17486 8.3537E-05 0.24644 0.00011774 0.4213 0.00020127 477.74821656022834 64.102 0.77875 60.686 60.388 61.166 -3.4158 -0.056767 -8.3628E-05 NaN 36.044 34 21 2 NaN NaN NaN NaN 0 NaN NaN 0 3124400 45056 4078 30001 30021 0.003208906551662949 TEAEIAHIA 9 Unmodified _TEAEIAHIA_ 0 0 0 ENSG00000137312|ENST00000376389|FLOT1 ENSG00000137312|ENST00000376389|FLOT1 ENSG00000137312|ENST00000376389|FLOT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.748182 953.481811 0.28149 0.00013448 0.085052 4.0634E-05 0.36654 0.00017512 477.7481401958204 63.904 0.86979 60.647 60.296 61.165 -3.2567 -0.096141 -0.00023783 NaN 36.044 47 24 3 NaN NaN NaN NaN 0 NaN NaN 0 3357400 45057 4078 30001 30021 0.003208906551662949 TEAEVMVM 8 Unmodified _TEAEVMVM_ 0 0 0 ENST00000576129.5_1_17:1936818-1940251:+|nuORF;nc|ENSG00000108963|Q9BZG8-2|DPH1;ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1 ENST00000576129.5_1_17:1936818-1940251:+|nuORF ENST00000576129.5_1_17:1936818-1940251:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.4097900390625 1 909.405617 908.39834 0.22134 0.00020129 0.11913 0.00010834 0.34047 0.00030962 909.4056609292338 101.54 0.6561 97.385 97.05 97.706 -4.1594 29 18 2 0 0 0 0.0799 1 19928 19928 67.035 10.494 1 2910200 45058 2508 30002 30022 44320 44320 -0.0595230510851934 TEAEVMVM 8 Unmodified _TEAEVMVM_ 0 0 0 ENST00000576129.5_1_17:1936818-1940251:+|nuORF;nc|ENSG00000108963|Q9BZG8-2|DPH1;ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1 ENST00000576129.5_1_17:1936818-1940251:+|nuORF ENST00000576129.5_1_17:1936818-1940251:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 910.4086303710938 1 909.405617 908.39834 0.56118 0.00051034 -0.3467 -0.00031529 0.21449 0.00019506 909.4052664527352 101.71 0.61928 97.393 97.118 97.738 -4.3208 27 17 2 0 0 0 0.097641 4 19483 19436;19438;19479;19483 63.563 7.5109 1 2838600 45059 2508 30002 30022 44321;44322;44323;44324 44324 -0.0595230510851934 TEAEVMVM 8 Unmodified _TEAEVMVM_ 0 0 0 ENST00000576129.5_1_17:1936818-1940251:+|nuORF;nc|ENSG00000108963|Q9BZG8-2|DPH1;ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1 ENST00000576129.5_1_17:1936818-1940251:+|nuORF ENST00000576129.5_1_17:1936818-1940251:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 910.4096069335938 1 909.405617 908.39834 0.56581 0.00051455 -0.40387 -0.00036728 0.16194 0.00014727 909.4052279068735 101.41 0.73145 97.424 97.1 97.832 -3.9895 26 20 2 0 0 0 8448 2 19472 19472;19509 2.643 1.9616 1 2206400 45060 2508 30002 30022 44325;44326 44325 -0.0595230510851934 TEAGSNVFR 9 Unmodified _TEAGSNVFR_ 0 0 0 tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1 tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1 tr|U7T616|U7T616_FUSNUBranched-chainaminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00058PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2558288574219 2 490.743431 979.472308 -0.19403 -9.5218E-05 -3.0639 -0.0015036 -3.2579 -0.0015988 490.7414043200603 39.137 0.56414 36.588 36.225 36.789 -2.5491 23 15 2 0 0 0 0.76271 1 7267 7267 14.838 2.3067 1 1103500 45061 26485 30003 30023 44327 44327 -0.01824877630338051 TEAIYPRFS 9 Unmodified _TEAIYPRFS_ 0 0 0 nc|ENSG00000066294|Q9UIB8-4|CD84;ENST00000360056.7_1_1:160523087-160549236:-|nuORF nc|ENSG00000066294|Q9UIB8-4|CD84 nc|ENSG00000066294|Q9UIB8-4|CD84 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7808227539062 2 542.277106 1082.53966 0.023038 1.2493E-05 0.019353 1.0495E-05 0.042391 2.2987E-05 542.2770493977222 50.977 0.73247 47.925 47.574 48.306 -3.0517 62 20 4 0 0 0 0.5059 1 9354 9354 19.257 2.1441 1 13266000 45062 9009 30004 30024 44328 44328 0.0016915258061089844 TEAKLDFR 8 Unmodified _TEAKLDFR_ 0 0 0 REV__tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1 REV__tr|U7STC5|U7STC5_FUSNUThreonine/serineexporter-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01363PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26531982421875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 79.297 1 79.297 78.797 79.797 0 0 0 0 0.2343 1 15430 15430 0.12286 0 1 + 45063 25100 30005 30025 44329 44329 0.023328834091330464 TEALDLQTA 9 Unmodified _TEALDLQTA_ 0 0 0 REV__ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant REV__ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2453918457031 2 481.245472 960.476391 0.33107 0.00015933 -0.67529 -0.00032498 -0.34421 -0.00016565 481.24511053279184 67.672 0.45659 64.176 63.89 64.346 -3.4965 14 12 2 0 0 0 0.30056 1 12711 12711 2.6312 1.4164 1 1053500 + 45064 14218 30006 30026 44330 44330 -0.005428329272831434 TEALHFVAA 9 Unmodified _TEALHFVAA_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB;CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant ENSG00000125817|ENST00000379751|CENPB;CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant ENSG00000125817|ENST00000379751|CENPB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2438659667969 2 479.753267 957.491981 0.05911 2.8358E-05 -0.021417 -1.0275E-05 0.037693 1.8083E-05 479.7532291007727 97.873 1.288 93.775 93.081 94.369 -4.0978 111 36 4 0 0 0 0.63326 1 19219 19219 15.847 2.3393 1 20584000 45065 3392;481 30007 30027 44331 44331 0.01153498380426754 TEAPGGTS 8 Unmodified _TEAPGGTS_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2013244628906 2 360.163951 718.313348 NaN NaN NaN NaN NaN NaN NaN 93.73 1 89.587 89.087 90.087 -4.1435 0 0 0 0.21486 1 17870 17870 8.5933 0 1 45066 7651 30008 30028 44332 44332 -0.05707591258465072 TEAPPTLPP 9 Unmodified _TEAPPTLPP_ 0 0 0 NBL1|p.H173Tfs*37|2|0.39|ENSG00000158747|chr1:19657095-19657095|C/-|frameshift_variant NBL1|p.H173Tfs*37|2|0.39|ENSG00000158747|chr1:19657095-19657095|C/-|frameshift_variant NBL1|p.H173Tfs*37|2|0.39|ENSG00000158747|chr1:19657095-19657095|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5287780761719 2 461.74765 921.480748 NaN NaN NaN NaN NaN NaN NaN 74.393 1 74.393 73.893 74.893 0 0 0 0 0.20155 1 14443 14443 23.148 5.0134 1 45067 12200 30009 30029 44333 44333 0.01686676286283273 TEAPRWPLP 9 Unmodified _TEAPRWPLP_ 0 0 0 nc|ENSG00000140451|Q9H611-2|PIF1;ENST00000560444.1_1_15:65114569-65116540:-|nuORF;PIF1|p.T248Kfs*34|1|0.52|ENSG00000140451|chr15:64822340-64822340|G/-|frameshift_variant;PIF1|p.A479Pfs*3|1|0.3|ENSG00000140451|chr15:64819122-64819122|C/-|frameshift_variant;nc|ENSG00000140451|Q9H611-4|PIF1;ENSG00000140451|ENST00000559239|PIF1;nc|ENSG00000140451|Q9H611-3|PIF1 nc|ENSG00000140451|Q9H611-2|PIF1 nc|ENSG00000140451|Q9H611-2|PIF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2857055664062 2 533.787641 1065.56073 0.10552 5.6324E-05 2.1926 0.0011704 2.2982 0.0012267 534.291049743455 137.39 1.0532 132.75 132.41 133.46 -4.6413 36 29 2 0 0 0 0.46882 1 27178 27178 21.537 5.6898 1 5043200 45068 4300 30010 30030 44334 44334 0.030571626801247476 TEAPSGPAPQ 10 Unmodified _TEAPSGPAPQ_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.733154296875 2 477.729989 953.445425 -0.11994 -5.7298E-05 -0.53915 -0.00025757 -0.65909 -0.00031487 477.7295978081922 19.937 0.70086 19.937 19.758 20.459 0 31 19 3 0 0 0 0.57807 1 3279 3279 20.415 2.2682 1 1337800 + 45069 15439 30011 30031 44335 44335 -0.03315986241511837 TEAPSGPAPQ 10 Unmodified _TEAPSGPAPQ_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.729989 953.445425 -0.11994 -5.7298E-05 -0.53915 -0.00025757 -0.65909 -0.00031487 477.7295978081922 19.937 0.70086 19.937 19.758 20.459 0 0.085404 -0.00063641 NaN 20.415 31 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1337800 + 45070 15439 30011 30031 -0.03315986241511837 TEAPSGPAPQ 10 Unmodified _TEAPSGPAPQ_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.729989 953.445425 0.44507 0.00021262 -0.29563 -0.00014123 0.14944 7.139E-05 477.7297829581803 21.349 0.31496 19.875 19.701 20.016 -1.4742 0.023109 -0.00040373 NaN 20.415 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1127700 + 45071 15439 30011 30031 -0.03315986241511837 TEAPSGPAPQ 10 Unmodified _TEAPSGPAPQ_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.729989 953.445425 -0.20977 -0.00010021 0.59725 0.00028532 0.38748 0.00018511 477.7300963773161 21.231 0.32001 19.846 19.649 19.969 -1.3847 -0.0053128 0.00044938 NaN 20.415 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1033500 + 45072 15439 30011 30031 -0.03315986241511837 TEAPSGPAPQ 10 Unmodified _TEAPSGPAPQ_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.729989 953.445425 -0.6965 -0.00033274 0.6823 0.00032595 -0.014203 -6.7851E-06 477.73028486464733 21.469 0.32044 19.748 19.598 19.919 -1.7211 -0.1032 0.00053064 NaN 20.415 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 654030 + 45073 15439 30011 30031 -0.03315986241511837 TEAQIKHLA 9 Unmodified _TEAQIKHLA_ 0 0 0 nc|ENSG00000125755|Q92797-2|SYMPK;SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant;SYMPK|p.S1168Pfs*46|1|0.35|ENSG00000125755|chr19:45816037-45816037|G/-|frameshift_variant;ENSG00000125755|ENST00000245934|SYMPK nc|ENSG00000125755|Q92797-2|SYMPK nc|ENSG00000125755|Q92797-2|SYMPK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0621337890625 3 337.525825 1009.55564 -0.23861 -8.0537E-05 0.22206 7.4952E-05 -0.01655 -5.586E-06 337.52586824475367 29.234 0.73098 27.238 26.971 27.702 -1.9962 48 20 3 0 0 0 0.87262 1 4947 4947 5.2969 0 1 3895700 45074 3384 30012 30032 44336 44336 0.05124858817521272 TEAQIKHLA 9 Unmodified _TEAQIKHLA_ 0 0 0 nc|ENSG00000125755|Q92797-2|SYMPK;SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant;SYMPK|p.S1168Pfs*46|1|0.35|ENSG00000125755|chr19:45816037-45816037|G/-|frameshift_variant;ENSG00000125755|ENST00000245934|SYMPK nc|ENSG00000125755|Q92797-2|SYMPK nc|ENSG00000125755|Q92797-2|SYMPK MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 337.525825 1009.55564 0.37745 0.0001274 -0.41371 -0.00013964 -0.036262 -1.2239E-05 337.52564425223085 29.249 0.56617 27.293 27.015 27.581 -1.9561 -0.00013665 -0.00035389 NaN 5.2969 44 15 4 NaN NaN NaN NaN 0 NaN NaN 0 4487700 45075 3384 30012 30032 0.05124858817521272 TEAQIKHLA 9 Unmodified _TEAQIKHLA_ 0 0 0 nc|ENSG00000125755|Q92797-2|SYMPK;SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant;SYMPK|p.S1168Pfs*46|1|0.35|ENSG00000125755|chr19:45816037-45816037|G/-|frameshift_variant;ENSG00000125755|ENST00000245934|SYMPK nc|ENSG00000125755|Q92797-2|SYMPK nc|ENSG00000125755|Q92797-2|SYMPK MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 337.525825 1009.55564 0.32359 0.00010922 -0.35931 -0.00012128 -0.035714 -1.2055E-05 337.5256690253655 29.101 0.7044 27.208 26.878 27.583 -1.8928 -0.084793 -0.00029881 NaN 5.2969 57 19 4 NaN NaN NaN NaN 0 NaN NaN 0 5797600 45076 3384 30012 30032 0.05124858817521272 TEARARPGW 9 Unmodified _TEARARPGW_ 0 0 0 REV__ENSG00000182798|ENST00000400004|MAGEB17 REV__ENSG00000182798|ENST00000400004|MAGEB17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2625122070312 2 522.27269 1042.53083 -0.10962 -5.725E-05 -1.2573 -0.00065666 -1.3669 -0.00071391 522.2719422474294 68.788 0.49663 68.788 68.539 69.036 0 17 13 2 0 0 0 0.6329 1 13265 13265 10.824 0.024421 1 1768500 + 45077 18800 30013 30033 44337 44337 0.01126223734809173 TEARGLPGD 9 Unmodified _TEARGLPGD_ 0 0 0 ENST00000545255.1_1_11:114182877-114183027:+|nuORF ENST00000545255.1_1_11:114182877-114183027:+|nuORF ENST00000545255.1_1_11:114182877-114183027:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2383117675781 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 80.137 1 76.332 75.832 76.832 -3.8048 0 0 0 0.1761 1 15205 15205 26.884 1.4843 1 45078 11118 30014 30034 44338 44338 -0.014885665216525013 TEARRLGL 8 Unmodified _TEARRLGL_ 0 0 0 REV__XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant REV__XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.225341796875 2 458.272158 914.529764 -0.04447 -2.0379E-05 0.913 0.0004184 0.86853 0.00039802 458.2725190944972 43.474 0.17348 40.726 40.591 40.765 -2.7475 6 4 2 0 0 0 0.64227 1 7852 7852 19.439 0 1 492120 + 45079 14883 30015 30035 44339 44339 0.06908009365906764 TEARRLGL 8 Unmodified _TEARRLGL_ 0 0 0 REV__XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant REV__XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.272158 914.529764 -0.17666 -8.0957E-05 0.92452 0.00042368 0.74786 0.00034272 458.27263350880764 43.508 0.38729 40.789 40.666 41.053 -2.7191 0.031567 4.6901E-06 NaN 19.439 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 689170 + 45080 14883 30015 30035 0.06908009365906764 TEARRLGL 8 Unmodified _TEARRLGL_ 0 0 0 REV__XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant REV__XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 458.272158 914.529764 -0.04447 -2.0379E-05 0.913 0.0004184 0.86853 0.00039802 458.2725190944972 43.474 0.17348 40.726 40.591 40.765 -2.7475 -0.031567 -5.8671E-06 NaN 19.439 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 492120 + 45081 14883 30015 30035 0.06908009365906764 TEARVRILI 9 Unmodified _TEARVRILI_ 0 0 0 ENSG00000182631|ENST00000330120|RXFP3;RXFP3|p.A74V|1|0.35|ENSG00000182631|chr5:33936961-33936961|C/T|missense_variant ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.560546875 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 24.237 1 22.684 22.184 23.184 -1.5532 0 0 0 0.23508 1 4213 4213 2.7352 0 1 45082 6801 30016 30036 44340 44340 0.1287340001395023 TEARVRILI 9 Unmodified _TEARVRILI_ 0 0 0 ENSG00000182631|ENST00000330120|RXFP3;RXFP3|p.A74V|1|0.35|ENSG00000182631|chr5:33936961-33936961|C/T|missense_variant ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5619201660156 3 357.560869 1069.66078 -0.0019464 -6.9595E-07 1.7958 0.00064212 1.7939 0.00064143 357.56141217705937 24.116 0.20738 22.582 22.507 22.714 -1.5342 8 5 2 0 0 0 0.77797 1 3923 3923 2.7352 0 1 405900 45083 6801 30016 30036 44341 44341 0.1287340001395023 TEASASURUK 10 Unmodified _TEASASURUK_ 0 0 0 ENSG00000250722|ENST00000514985|SELENOP ENSG00000250722|ENST00000514985|SELENOP ENSG00000250722|ENST00000514985|SELENOP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3218383789062 2 576.178509 1150.34247 NaN NaN NaN NaN NaN NaN NaN 173 1 168.11 167.61 168.61 -4.8977 0 0 0 2.8426 1 34336 34336 0 0 0 45084 7906 30017 30037 44342 44342 -0.22669166090167892 TEAWHGVKLY 10 Unmodified _TEAWHGVKLY_ 0 0 0 REV__ENSG00000198822|ENST00000361669|GRM3 REV__ENSG00000198822|ENST00000361669|GRM3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2803344726562 2 602.31148 1202.60841 NaN NaN NaN NaN NaN NaN NaN 83.721 1 83.721 83.221 84.221 0 0 0 0 0.22588 1 16323 16323 10.824 1.4408 1 + 45085 19454 30018 30038 44343 44343 0.01520816880338316 TEAYRLVQ 8 Unmodified _TEAYRLVQ_ 0 0 0 nc|ENSG00000117791|Q969Z3-2|MTARC2;ENSG00000117791|ENST00000366913|MTARC2 nc|ENSG00000117791|Q969Z3-2|MTARC2 nc|ENSG00000117791|Q969Z3-2|MTARC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.264892578125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 132.14 1 127.5 127 128 -4.6399 0 0 0 0.22699 1 26046 26046 0.62683 0 1 45086 3003 30019 30039 44344 44344 0.02332883409144415 TEAYVRAF 8 Unmodified _TEAYVRAF_ 0 0 0 ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7314453125 2 478.745442 955.476331 -0.18196 -8.7113E-05 0.43255 0.00020708 0.25059 0.00011997 478.74576824877226 81.454 0.45669 77.766 77.558 78.015 -3.6879 13 12 2 0 0 0 0.64512 1 15523 15523 19.257 2.3147 1 466430 45087 5299 30020 30040 44345 44345 -0.003187881366216061 TEAYVRAF 8 Unmodified _TEAYVRAF_ 0 0 0 ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.745442 955.476331 0.02443 1.1696E-05 0.71159 0.00034067 0.73602 0.00035237 478.7451620495851 81.64 0.34858 77.801 77.508 77.856 -3.8392 0.017727 0.00022582 NaN 19.257 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 443590 45088 5299 30020 30040 -0.003187881366216061 TECFKWQQKED 11 Unmodified _TECFKWQQKED_ 0 0 0 REV__ENSG00000169393|ENST00000339841|ELSPBP1 REV__ENSG00000169393|ENST00000339841|ELSPBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7784118652344 3 481.218731 1440.63436 -0.004877 -2.3469E-06 0.18924 9.1064E-05 0.18436 8.8717E-05 481.2187266387464 85.476 0.81496 81.812 81.365 82.18 -3.6641 60 22 4 0 0 0 0.66124 1 16655 16655 0.094841 0.088886 1 4298300 + 45089 18097 30021 30041 44346 44346 -0.06832701730354529 TECINPQDY 9 Unmodified _TECINPQDY_ 0 0 0 ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant;ADH1C|p.K249I|1|0.31|ENSG00000248144|chr4:99342877-99342877|T/A|missense_variant;nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000248144|ENST00000515683|ADH1C;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2582397460938 2 541.726589 1081.43863 0.30004 0.00016254 -0.2193 -0.0001188 0.080737 4.3737E-05 541.7266503992998 28.114 0.73341 26.359 26.072 26.805 -1.7552 52 20 3 0 0 0 0.80521 1 4781 4781 10.824 2.9138 1 4218100 45090 83 30022 30042 44347 44347 -0.09883667184408296 TECNTKKEPNP 11 Unmodified _TECNTKKEPNP_ 0 0 0 REV__ENST00000519507.5_1_8:104165483-104240324:+|nuORF REV__ENST00000519507.5_1_8:104165483-104240324:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.75634765625 2 630.798077 1259.5816 NaN NaN NaN NaN NaN NaN NaN 76.899 1 73.484 72.984 73.984 -3.4151 0 0 0 0.22595 1 15011 15011 11.495 0.6952 1 + 45091 17724 30023 30043 44348 44348 -0.03780659793142149 TECRDDFE 8 Unmodified _TECRDDFE_ 0 0 0 REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 338.5284423828125 3 338.799285 1013.37602 NaN NaN NaN NaN NaN NaN NaN 29.36 1 27.286 26.786 27.786 -2.0743 0 0 0 0.23749 1 4989 4989 0.0082765 0 1 + 45092 14319 30024 30044 44349 44349 -0.13012813252589694 TECRNSNR 8 Unmodified _TECRNSNR_ 0 0 0 ENST00000333319.6_1_7:156431510-156431657:-|nuORF ENST00000333319.6_1_7:156431510-156431657:-|nuORF ENST00000333319.6_1_7:156431510-156431657:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2648620605469 2 490.22234 978.430126 NaN NaN NaN NaN NaN NaN NaN 139.26 1 139.26 138.76 139.76 0 0 0 0 0.2325 1 27675 27675 0.62683 0.21856 1 45093 8789 30025 30045 44350 44350 -0.0599517631035269 TECTLPSMV 9 Unmodified _TECTLPSMV_ 0 0 0 nc|ENSG00000213471|A6NNM8|TTLL13;ENSG00000213471|ENST00000641754|TTLL13;ENST00000561573.1_1_15:90806992-90815017:+|nuORF nc|ENSG00000213471|A6NNM8|TTLL13;ENST00000561573.1_1_15:90806992-90815017:+|nuORF ENST00000561573.1_1_15:90806992-90815017:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2586975097656 2 490.725003 979.435454 NaN NaN NaN NaN NaN NaN NaN 113.17 1 108.89 108.39 109.39 -4.2725 0 0 0 0.23508 1 21793 21793 10.824 0.64053 1 45094 12590;11304 30026 30046 44351 44351 -0.055086335627606786 TEDARHGPP 9 Unmodified _TEDARHGPP_ 0 0 0 REV__ENST00000333651.10_1_19:3578522-3579050:+|nuORF REV__ENST00000333651.10_1_19:3578522-3579050:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2540283203125 2 490.23323 978.451907 NaN NaN NaN NaN NaN NaN NaN 71.232 1 67.653 67.153 68.153 -3.5798 0 0 0 0.23508 1 13432 13432 10.824 2.9138 1 + 45095 20640 30027 30047 44352 44352 -0.038180482901452706 TEDDGRPIY 9 Unmodified _TEDDGRPIY_ 0 0 0 ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF ENSG00000169189|ENST00000361439|NSMCE1 ENSG00000169189|ENST00000361439|NSMCE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2864990234375 2 533.246003 1064.47745 0.2093 0.00011161 0.38939 0.00020764 0.5987 0.00031925 533.2461322997171 38.607 0.50155 38.607 38.354 38.856 0 22 13 2 0 0 0 0.50308 1 7165 7165 38.176 10.547 1 1147900 45096 5969 30028 30048 44353 44353 -0.05220618558360002 TEDDGRPIY 9 Unmodified _TEDDGRPIY_ 0 0 0 ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF ENSG00000169189|ENST00000361439|NSMCE1 ENSG00000169189|ENST00000361439|NSMCE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2864379882812 2 533.246003 1064.47745 -0.11481 -6.1224E-05 0.4874 0.0002599 0.37259 0.00019868 533.2462445890801 41.324 0.58525 38.689 38.432 39.017 -2.6348 28 16 2 0 0 0 0.19141 1 7700 7700 57.722 17.772 1 1591500 45097 5969 30028 30048 44354 44354 -0.05220618558360002 TEDDGRPIY 9 Unmodified _TEDDGRPIY_ 0 0 0 ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF ENSG00000169189|ENST00000361439|NSMCE1 ENSG00000169189|ENST00000361439|NSMCE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2859497070312 2 533.246003 1064.47745 0.3343 0.00017826 0.43065 0.00022964 0.76495 0.0004079 533.2459888680977 41.129 0.62856 38.589 38.348 38.977 -2.5398 30 17 3 0 0 0 0.063365 1 7401 7401 66.457 18.708 1 1242400 45098 5969 30028 30048 44355 44355 -0.05220618558360002 TEDDGRPIY 9 Unmodified _TEDDGRPIY_ 0 0 0 ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF ENSG00000169189|ENST00000361439|NSMCE1 ENSG00000169189|ENST00000361439|NSMCE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26806640625 2 533.246003 1064.47745 0.11404 6.0812E-05 0.30798 0.00016423 0.42202 0.00022504 533.2460622013039 41.215 0.60595 38.726 38.386 38.992 -2.4896 27 16 2 0 0 0 0.64397 1 7367 7367 24.991 4.5764 1 1295800 45099 5969 30028 30048 44356 44356 -0.05220618558360002 TEDEDWRGS 9 Unmodified _TEDEDWRGS_ 0 0 0 REV__ENST00000341184.6_1_22:39853433-39883480:+|nuORF REV__ENST00000341184.6_1_22:39853433-39883480:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.786865234375 2 547.722892 1093.43123 NaN NaN NaN NaN NaN NaN NaN 62.039 1 58.799 58.299 59.299 -3.2395 0 0 0 0.21065 1 11624 11624 20.454 3.5113 1 + 45100 20712 30029 30049 44357 44357 -0.1117468346046735 TEDNNNNNNNS 11 Unmodified _TEDNNNNNNNS_ 0 0 0 REV__ENST00000403491.7_1_1:61922313-61922541:+|nuORF REV__ENST00000403491.7_1_1:61922313-61922541:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 625.2374267578125 2 625.237426 1248.4603 NaN NaN NaN NaN NaN NaN NaN 4.0505 1 4.0505 3.5505 4.5505 0 0 0 0 0.23698 1 10 10 0 0 1 + 45101 21369 30030 30050 44358 44358 -0.15399190902121518 TEDPDRLGY 9 Unmodified _TEDPDRLGY_ 0 0 0 tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1 tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1 tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2838134765625 2 533.246003 1064.47745 0.2984 0.00015912 0.90513 0.00048265 1.2035 0.00064177 533.2463383957437 75.722 1.5318 75.722 75.344 76.875 0 77 43 2 0 0 0 0.42844 1 14838 14838 24.021 2.4304 1 10273000 45102 26051 30031 30051 44359 44359 -0.05220618558360002 TEDPDRLGY 9 Unmodified _TEDPDRLGY_ 0 0 0 tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1 tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1 tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 533.246003 1064.47745 0.11275 6.0125E-05 0.19429 0.0001036 0.30704 0.00016373 533.2460582180454 79.458 1.0232 75.948 75.555 76.578 -3.5102 0.074573 -0.00035132 NaN 24.021 62 28 4 NaN NaN NaN NaN 0 NaN NaN 0 12779000 45103 26051 30031 30051 -0.05220618558360002 TEDRQSVPNQS 11 Unmodified _TEDRQSVPNQS_ 0 0 0 REV__GRIN2A|p.A1037T|1|0.38|ENSG00000183454|chr16:9764435-9764435|C/T|missense_variant REV__GRIN2A|p.A1037T|1|0.38|ENSG00000183454|chr16:9764435-9764435|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7662963867188 2 630.79438 1259.57421 NaN NaN NaN NaN NaN NaN NaN 146.81 1 141.81 141.31 142.31 -5 0 0 0 0.22632 1 28414 28414 0.0059557 0 1 + 45104 23592 30032 30052 44360 44360 -0.04519676069230627 TEDSKCVREH 10 Unmodified _TEDSKCVREH_ 0 0 0 REV__ENSG00000167384|ENST00000592529|ZNF180 REV__ENSG00000167384|ENST00000592529|ZNF180 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2732543945312 2 602.274769 1202.53499 NaN NaN NaN NaN NaN NaN NaN 13.729 1 12.556 12.056 13.056 -1.173 0 0 0 0.22588 1 1807 1807 5.2969 0.54088 1 + 45105 17922 30033 30053 44361 44361 -0.05818099624457318 TEDTIKKSF 9 Unmodified _TEDTIKKSF_ 0 0 0 RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant;nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47 RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0492248535156 3 356.85724 1067.54989 -0.46152 -0.0001647 0.80179 0.00028612 0.34027 0.00012143 356.8575039856059 34.72 0.59212 32.402 32.118 32.71 -2.3175 49 16 4 0 0 0 0.81359 1 6368 6368 11.495 4.393 1 5571800 45106 5454 30034 30054 44362 44362 0.01881715515196447 TEDTIKKSF 9 Unmodified _TEDTIKKSF_ 0 0 0 RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant;nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47 RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5526428222656 3 356.85724 1067.54989 0.18776 6.7004E-05 0.056161 2.0041E-05 0.24392 8.7046E-05 356.8572164698517 34.605 0.62682 32.352 32.048 32.675 -2.2527 51 17 4 0 0 0 0.6748 1 6088 6088 7.9454 1.315 1 4751700 45107 5454 30034 30054 44363 44363 0.01881715515196447 TEDTIKKSF 9 Unmodified _TEDTIKKSF_ 0 0 0 RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant;nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000163694|ENST00000295971|RBM47 RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.1033935546875 3 356.85724 1067.54989 -0.33279 -0.00011876 0.63167 0.00022542 0.29888 0.00010666 356.85741326242675 34.641 0.70026 32.364 32.061 32.761 -2.2766 49 19 3 0 0 0 0.81359 1 6063 6063 7.609 0 1 5213600 45108 5454 30034 30054 44364 44364 0.01881715515196447 TEDVKGRIY 9 Unmodified _TEDVKGRIY_ 0 0 0 NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENSG00000010292|ENST00000315579|NCAPD2;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.268310546875 2 540.787838 1079.56112 0.30481 0.00016484 0.15681 8.48E-05 0.46162 0.00024964 540.7880337133083 33.537 0.41114 31.39 31.222 31.634 -2.1468 16 11 2 0 0 0 0.31714 1 5834 5834 30.637 13.694 1 383810 45109 1061;11089 30035 30055 44365 44365 0.024525376093379236 TEDVKGRIY 9 Unmodified _TEDVKGRIY_ 0 0 0 NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENSG00000010292|ENST00000315579|NCAPD2;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.787838 1079.56112 0.15705 8.493E-05 0.70425 0.00038085 0.8613 0.00046578 540.7881654906489 33.725 0.27857 31.407 31.252 31.531 -2.3175 0.0039099 0.00067523 NaN 30.637 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 639560 45110 1061;11089 30035 30055 0.024525376093379236 TEDVKGRIY 9 Unmodified _TEDVKGRIY_ 0 0 0 NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENSG00000010292|ENST00000315579|NCAPD2;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENST00000542472.1_1_12:6626979-6631036:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.787838 1079.56112 0.48176 0.00026053 -0.45511 -0.00024612 0.026654 1.4414E-05 540.7877585135482 33.628 0.31016 31.412 31.182 31.492 -2.2158 0.009261 -0.0005787 NaN 30.637 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 421340 45111 1061;11089 30035 30055 0.024525376093379236 TEDVVRVY 8 Unmodified _TEDVVRVY_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2761535644531 2 490.756007 979.497461 -0.14278 -7.007E-05 0.38611 0.00018949 0.24333 0.00011942 490.756117427837 67.746 1.166 67.746 67.193 68.359 0 62 32 3 0 0 0 0.44257 1 13053 13053 49.933 15.831 1 4804900 45112 1097 30036 30056 44366 44366 0.006891771722393969 TEDVVRVY 8 Unmodified _TEDVVRVY_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2540283203125 2 490.756007 979.497461 0.40636 0.00019942 -0.068066 -3.3404E-05 0.33829 0.00016602 490.7559565669095 71.338 0.9495 67.759 67.435 68.384 -3.5798 54 26 3 0 0 0 0.35245 1 13432 13432 58.679 28.042 1 3960200 45113 1097 30036 30056 44367 44367 0.006891771722393969 TEDVVRVY 8 Unmodified _TEDVVRVY_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26483154296875 2 490.756007 979.497461 0.11915 5.8473E-05 0.17344 8.5114E-05 0.29258 0.00014359 490.75604552851047 71.216 1.0561 67.749 67.379 68.435 -3.467 60 29 3 0 0 0 0.38349 1 13494 13494 56.177 42.271 1 4748200 45114 1097 30036 30056 44368 44368 0.006891771722393969 TEEALGFTTGG 11 Unmodified _TEEALGFTTGG_ 0 0 0 REV__tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1 REV__tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7877807617188 2 541.753661 1081.49277 0.55647 0.00030147 -0.10613 -5.7496E-05 0.45034 0.00024397 541.7535479225426 116.92 1.096 112.56 111.99 113.09 -4.3585 102 30 5 0 0 0 0.34662 1 22509 22509 0.11104 0 1 34110000 + 45115 25250 30037 30057 44369 44369 -0.04471751761207088 TEEDPILRA 9 Unmodified _TEEDPILRA_ 0 0 0 nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27197265625 2 522.272021 1042.52949 -0.10962 -5.725E-05 0.023057 1.2042E-05 -0.08656 -4.5208E-05 522.2719422474294 68.788 0.49663 68.788 68.539 69.036 0 17 13 2 0 0 0 0.15274 1 13321 13321 43.772 21.036 1 1768500 45116 4586 30038 30058 44370 44370 0.009925448553985916 TEEDPILRA 9 Unmodified _TEEDPILRA_ 0 0 0 nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26171875 2 522.272021 1042.52949 -0.35647 -0.00018617 0.36082 0.00018845 0.0043501 2.2719E-06 522.2721591784377 71.902 0.56467 68.591 68.283 68.848 -3.3107 26 15 2 0 0 0 0.063365 4 14022 13968;14018;14022;14032 66.457 38.828 1 1819500 45117 4586 30038 30058 44371;44372;44373;44374 44373 0.009925448553985916 TEEDPILRA 9 Unmodified _TEEDPILRA_ 0 0 0 nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2716064453125 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 72.078 1 68.451 67.951 68.951 -3.6275 0 0 0 0.19006 1 13604 13604 24.991 5.734 1 45118 4586 30038 30058 44375 44375 0.009925448553985916 TEEDPILRA 9 Unmodified _TEEDPILRA_ 0 0 0 nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2822265625 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 72.161 1 68.534 68.034 69.034 -3.6275 0 0 0 0.055781 1 13623 13623 49.554 26.406 1 45119 4586 30038 30058 44376 44376 0.009925448553985916 TEEDPILRA 9 Unmodified _TEEDPILRA_ 0 0 0 nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2625122070312 2 522.272021 1042.52949 0.41326 0.00021583 -0.22345 -0.0001167 0.18981 9.9131E-05 522.2716787823192 72.207 0.79309 68.669 68.258 69.051 -3.5385 36 22 3 0 0 0 0.25976 2 13710 13697;13710 24.882 20.166 1 1407700 45120 4586 30038 30058 44377;44378 44378 0.009925448553985916 TEEEAWRFPP 10 Unmodified _TEEEAWRFPP_ 0 0 0 REV__nc|ENSG00000144061|O15259-3|NPHP1 REV__nc|ENSG00000144061|O15259-3|NPHP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.3221435546875 3 421.199777 1260.5775 -0.4185 -0.00017627 -0.47706 -0.00020094 -0.89556 -0.00037721 421.1996184581418 25.519 0.38433 23.666 23.499 23.883 -1.8534 16 10 2 0 0 0 0.91149 1 4228 4228 0.69767 0 1 537090 + 45121 16769 30039 30059 44379 44379 -0.042363812245639565 TEEEAWRFPP 10 Unmodified _TEEEAWRFPP_ 0 0 0 REV__nc|ENSG00000144061|O15259-3|NPHP1 REV__nc|ENSG00000144061|O15259-3|NPHP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 421.199777 1260.5775 0.041979 1.7682E-05 -0.6902 -0.00029071 -0.64822 -0.00027303 421.19946614949095 25.28 0.38571 23.745 23.538 23.924 -1.5342 0.039673 -0.00012374 NaN 0.69767 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 981170 + 45122 16769 30039 30059 -0.042363812245639565 TEEEKNFKA 9 Unmodified _TEEEKNFKA_ 0 0 0 ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13 ENST00000570149.1_1_16:89628679-89629447:+|nuORF ENST00000570149.1_1_16:89628679-89629447:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7747802734375 2 548.269478 1094.5244 0.2732 0.00014979 -0.074885 -4.1057E-05 0.19832 0.00010873 548.2695687301858 18.269 0.93812 18.269 18.057 18.996 0 90 26 5 0 0 0 3.2827E-10 1 2966 2966 165.72 100.49 1 456860000 45123 5815 30040 30060 44380 44380 -0.019077590072356543 TEEEKNFKA 9 Unmodified _TEEEKNFKA_ 0 0 0 ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13 ENST00000570149.1_1_16:89628679-89629447:+|nuORF ENST00000570149.1_1_16:89628679-89629447:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7850952148438 2 548.269478 1094.5244 0.34737 0.00019045 -0.11146 -6.1112E-05 0.23591 0.00012934 548.2695103152462 19.689 1.0443 18.292 18.066 19.111 -1.3966 85 29 6 0 0 0 0.62314 1 3386 3386 11.495 2.7493 1 273010000 45124 5815 30040 30060 44381 44381 -0.019077590072356543 TEEEKNFKA 9 Unmodified _TEEEKNFKA_ 0 0 0 ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13 ENST00000570149.1_1_16:89628679-89629447:+|nuORF ENST00000570149.1_1_16:89628679-89629447:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7664794921875 2 548.269478 1094.5244 -0.27642 -0.00015155 0.47767 0.00026189 0.20125 0.00011034 548.2698611294838 19.555 1.0844 18.23 18.002 19.086 -1.3251 108 30 7 0 0 0 0.029747 1 2991 2991 99.755 55.897 1 276070000 45125 5815 30040 30060 44382 44382 -0.019077590072356543 TEEEKNFKA 9 Unmodified _TEEEKNFKA_ 0 0 0 ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13 ENST00000570149.1_1_16:89628679-89629447:+|nuORF ENST00000570149.1_1_16:89628679-89629447:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7736206054688 2 548.269478 1094.5244 -0.87683 -0.00048074 1.1814 0.00064773 0.30457 0.00016699 548.2701660360583 19.845 1.0809 18.21 17.981 19.061 -1.6351 99 30 7 0 0 0 0.02787 1 3046 3046 103.42 61.58 1 171850000 45126 5815 30040 30060 44383 44383 -0.019077590072356543 TEEEMSINE 9 Unmodified _TEEEMSINE_ 0 0 0 REV__ENST00000442937.5_1_3:177159829-177347330:+|nuORF REV__ENST00000442937.5_1_3:177159829-177347330:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2738037109375 2 541.221336 1080.42812 NaN NaN NaN NaN NaN NaN NaN 117.53 1 112.92 112.42 113.42 -4.6106 0 0 0 0.23508 1 22555 22555 7.2892 0 1 + 45127 21724 30041 30061 44384 44384 -0.1088769462946857 TEEETQFY 8 Unmodified _TEEETQFY_ 0 0 0 nc|ENSG00000211455|Q9Y2H1-2|STK38L;STK38L|p.F383Lfs*9|1|0.1|ENSG00000211455|chr12:27319392-27319392|T/-|frameshift_variant;STK38|p.F382Lfs*70|1|0.16|ENSG00000112079|chr6:36497806-36497806|A/-|frameshift_variant;ENSG00000211455|ENST00000389032|STK38L;ENSG00000112079|ENST00000229812|STK38 nc|ENSG00000211455|Q9Y2H1-2|STK38L nc|ENSG00000211455|Q9Y2H1-2|STK38L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6995849609375 2 523.719287 1045.42402 NaN NaN NaN NaN NaN NaN NaN 132.02 1 127.22 126.72 127.72 -4.799 0 0 0 0.21039 1 25415 25415 16.942 5.302 1 45128 2668 30042 30062 44385 44385 -0.09687416060887699 TEEFPPPP 8 Unmodified _TEEFPPPP_ 0 0 0 XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.R1906Nfs*2|1|0.48|ENSG00000163092|chr2:167247632-167247635|CAGA/-|frameshift_variant;XIRP2|p.K589Rfs*4|1|0.21|ENSG00000163092|chr2:167243680-167243680|A/-|frameshift_variant;XIRP2|p.I658Nfs*14|1|0.22|ENSG00000163092|chr2:167243883-167243884|-/A|frameshift_variant;XIRP2|p.V839Afs*7|1|0.04|ENSG00000163092|chr2:167244432-167244433|-/CATCAAA|frameshift_variant;XIRP2|p.F1104Lfs*11|1|0.09|ENSG00000163092|chr2:167245228-167245229|-/ATCTTATCAATTGG|frameshift_variant;XIRP2|p.E1445Dfs*2|1|0.27|ENSG00000163092|chr2:167246249-167246262|TGAAAGAGAGATTT/-|frameshift_variant XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 457.2194519042969 2 457.218726 912.422899 NaN NaN NaN NaN NaN NaN NaN 57.003 1 53.827 53.327 54.327 -3.1761 0 0 0 0.23294 1 10620 10620 1.7423 0 1 45129 5399 30043 30063 44386 44386 -0.03681585639139939 TEEHLVLPE 9 Unmodified _TEEHLVLPE_ 0 0 0 REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2860107421875 2 533.774396 1065.53424 0.79231 0.00042291 -0.82161 -0.00043856 -0.029306 -1.5643E-05 533.7739103720608 105.85 1.5642 101.75 100.87 102.43 -4.0913 78 44 2 0 0 0 0.65155 1 20391 20391 21.747 0 1 14846000 + 45130 16369 30044 30064 44387 44387 0.004094289981594557 TEEKDRSIFW 10 Unmodified _TEEKDRSIFW_ 0 0 0 REV__EPHX1|p.F157Lfs*2|1|0.23|ENSG00000143819|chr1:225838758-225838759|TT/-|frameshift_variant REV__EPHX1|p.F157Lfs*2|1|0.23|ENSG00000143819|chr1:225838758-225838759|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2304992675781 3 437.550698 1309.63027 -0.12381 -5.4172E-05 0.12534 5.4843E-05 0.0015329 6.7071E-07 437.5506654049202 41.475 1.2708 38.986 38.386 39.657 -2.4896 31 14 3 0 0 0 0.75679 2 7377 7377;7497 3.5871 0.95582 1 1964400 + 45131 16753 30045 30065 44388;44389 44388 -0.012164231617589394 TEEKFIVKA 9 Unmodified _TEEKFIVKA_ 0 0 0 ENST00000554952.5_1_14:53173937-53176322:+|nuORF;ENST00000458604.6_1_14:53173986-53184887:+|nuORF;PSMC6|p.T181Hfs*16|1|0.28|ENSG00000100519|chr14:52718088-52718088|A/-|frameshift_variant;ENSG00000100519|ENST00000445930|PSMC6 ENST00000554952.5_1_14:53173937-53176322:+|nuORF ENST00000554952.5_1_14:53173937-53176322:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2698364257812 2 532.802957 1063.59136 0.06174 3.2895E-05 -0.1934 -0.00010304 -0.13166 -7.0149E-05 532.8027483058736 56.095 0.38947 52.919 52.693 53.082 -3.1761 24 10 3 0 0 0 0.066912 2 10404 10401;10404 65.474 42.737 1 6269800 45132 1986 30046 30066 44390;44391 44391 0.0621089627454694 TEEKFIVKA 9 Unmodified _TEEKFIVKA_ 0 0 0 ENST00000554952.5_1_14:53173937-53176322:+|nuORF;ENST00000458604.6_1_14:53173986-53184887:+|nuORF;PSMC6|p.T181Hfs*16|1|0.28|ENSG00000100519|chr14:52718088-52718088|A/-|frameshift_variant;ENSG00000100519|ENST00000445930|PSMC6 ENST00000554952.5_1_14:53173937-53176322:+|nuORF ENST00000554952.5_1_14:53173937-53176322:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.069580078125 3 355.53773 1063.59136 -0.67731 -0.00024081 0.68301 0.00024284 0.0056964 2.0253E-06 355.5378917255529 56.095 0.49659 52.919 52.622 53.119 -3.1761 27 13 3 0 0 0 0.8319 1 10455 10455 2.4985 0 1 5992600 45133 1986 30046 30066 44392 44392 0.0621089627454694 TEEKFIVKA 9 Unmodified _TEEKFIVKA_ 0 0 0 ENST00000554952.5_1_14:53173937-53176322:+|nuORF;ENST00000458604.6_1_14:53173986-53184887:+|nuORF;PSMC6|p.T181Hfs*16|1|0.28|ENSG00000100519|chr14:52718088-52718088|A/-|frameshift_variant;ENSG00000100519|ENST00000445930|PSMC6 ENST00000554952.5_1_14:53173937-53176322:+|nuORF ENST00000554952.5_1_14:53173937-53176322:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.802957 1063.59136 0.11364 6.055E-05 -0.56393 -0.00030047 -0.45029 -0.00023992 532.8026691139615 53.093 0.53236 53.093 52.785 53.317 0 0.12525 -0.00021134 NaN 65.474 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 9642100 45134 1986 30046 30066 0.0621089627454694 TEEKFIVKA 9 Unmodified _TEEKFIVKA_ 0 0 0 ENST00000554952.5_1_14:53173937-53176322:+|nuORF;ENST00000458604.6_1_14:53173986-53184887:+|nuORF;PSMC6|p.T181Hfs*16|1|0.28|ENSG00000100519|chr14:52718088-52718088|A/-|frameshift_variant;ENSG00000100519|ENST00000445930|PSMC6 ENST00000554952.5_1_14:53173937-53176322:+|nuORF ENST00000554952.5_1_14:53173937-53176322:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 355.53773 1063.59136 -0.24629 -8.7567E-05 0.1264 4.4938E-05 -0.1199 -4.2629E-05 355.8720674660323 53.126 0.5698 53.126 52.785 53.354 0 0.14525 -0.0003039 NaN 2.4985 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4514400 45135 1986 30046 30066 0.0621089627454694 TEEKFIVKA 9 Unmodified _TEEKFIVKA_ 0 0 0 ENST00000554952.5_1_14:53173937-53176322:+|nuORF;ENST00000458604.6_1_14:53173986-53184887:+|nuORF;PSMC6|p.T181Hfs*16|1|0.28|ENSG00000100519|chr14:52718088-52718088|A/-|frameshift_variant;ENSG00000100519|ENST00000445930|PSMC6 ENST00000554952.5_1_14:53173937-53176322:+|nuORF ENST00000554952.5_1_14:53173937-53176322:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.802957 1063.59136 -0.10833 -5.7719E-05 -0.2897 -0.00015435 -0.39803 -0.00021207 532.80281328594 55.775 0.48321 52.891 52.626 53.11 -2.8837 -0.076518 8.0888E-05 NaN 65.474 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 10414000 45136 1986 30046 30066 0.0621089627454694 TEEKIREY 8 Unmodified _TEEKIREY_ 0 0 0 ENST00000406003.2_1_12:10264431-10264902:+|nuORF;nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB ENST00000406003.2_1_12:10264431-10264902:+|nuORF ENST00000406003.2_1_12:10264431-10264902:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.55999755859375 3 356.517106 1066.52949 -0.95002 -0.0003387 1.3293 0.00047392 0.37928 0.00013522 356.51751507088136 24.48 0.61642 22.627 22.398 23.015 -1.8534 53 17 4 0 0 0 0.58432 1 3971 3971 18.146 3.3081 1 10739000 45137 7368 30047 30067 44393 44393 -0.0011145514461077255 TEEKIREY 8 Unmodified _TEEKIREY_ 0 0 0 ENST00000406003.2_1_12:10264431-10264902:+|nuORF;nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB ENST00000406003.2_1_12:10264431-10264902:+|nuORF ENST00000406003.2_1_12:10264431-10264902:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 356.517106 1066.52949 -0.24977 -8.9047E-05 0.62173 0.00022166 0.37196 0.00013261 356.51727759307636 22.719 0.52815 22.719 22.466 22.994 0 0.0462 -0.00039896 NaN 18.146 44 13 4 NaN NaN NaN NaN 0 NaN NaN 0 10362000 45138 7368 30047 30067 -0.0011145514461077255 TEEKLKEVF 9 Unmodified _TEEKLKEVF_ 0 0 0 RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19 RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2062072753906 3 374.87289 1121.59684 -0.49587 -0.00018589 0.45601 0.00017095 -0.039855 -1.4941E-05 374.8730908244092 67.555 0.52719 67.555 67.262 67.79 0 26 14 2 0 0 0 0.5354 1 13045 13045 17.443 5.9479 1 1552000 45139 3247 30048 30068 44394 44394 0.04090575066334168 TEEKLKEVF 9 Unmodified _TEEKLKEVF_ 0 0 0 RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19 RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2073059082031 3 374.87289 1121.59684 -0.3463 -0.00012982 0.50174 0.00018809 0.15544 5.8269E-05 374.87301329183623 70.537 0.66924 67.288 67.001 67.67 -3.2492 29 18 3 0 0 0 0.58077 2 13711 13711;13755 14.405 1.5328 1 1769600 45140 3247 30048 30068 44395;44396 44395 0.04090575066334168 TEEKLKEVF 9 Unmodified _TEEKLKEVF_ 0 0 0 RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19 RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2073669433594 3 374.87289 1121.59684 0.35441 0.00013286 -0.28466 -0.00010671 0.069747 2.6146E-05 374.8727095064825 71.018 0.48685 67.438 67.052 67.538 -3.5798 23 13 2 0 0 0 0.85359 1 13403 13403 4.5289 1.7937 1 1191100 45141 3247 30048 30068 44397 44397 0.04090575066334168 TEEKLKEVF 9 Unmodified _TEEKLKEVF_ 0 0 0 RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19 RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant RBM19|p.F841Sfs*18|1|0.28|ENSG00000122965|chr12:113915007-113915007|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2074890136719 3 374.87289 1121.59684 -0.33596 -0.00012594 0.42937 0.00016096 0.093414 3.5018E-05 374.8729552673279 70.764 0.52973 67.297 67.096 67.626 -3.467 23 14 2 0 0 0 0.45059 1 13427 13427 22.658 2.0772 1 1496700 45142 3247 30048 30068 44398 44398 0.04090575066334168 TEEKRQEEEPP 11 Unmodified _TEEKRQEEEPP_ 0 0 0 ENSG00000158639|ENST00000374955|PAGE5;ENSG00000238269|ENST00000374971|PAGE2B;ENSG00000234068|ENST00000374968|PAGE2;nc|ENSG00000158639|Q96GU1|PAGE5 ENSG00000158639|ENST00000374955|PAGE5 ENSG00000158639|ENST00000374955|PAGE5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2416687011719 3 457.884406 1370.63139 0.32871 0.00015051 -0.082048 -3.7569E-05 0.24666 0.00011294 457.8844953893973 37.069 0.44239 37.069 36.851 37.293 0 25 12 3 0 0 0 0.96089 1 6845 6845 7.4771 4.6338 1 714490 45143 5175 30049 30069 44399 44399 -0.039102535834899754 TEELRPGLE 9 Unmodified _TEELRPGLE_ 0 0 0 REV__LZTS2|p.R430W|1|0.16|ENSG00000107816|chr10:101005677-101005677|C/T|missense_variant REV__LZTS2|p.R430W|1|0.16|ENSG00000107816|chr10:101005677-101005677|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2722778320312 2 522.272021 1042.52949 -0.10962 -5.725E-05 0.023057 1.2042E-05 -0.08656 -4.5208E-05 522.2719422474294 68.788 0.49663 68.788 68.539 69.036 0 17 13 2 0 0 0 0.33512 1 13275 13275 1.2148 0.53344 1 1768500 + 45144 15092 30050 30070 44400 44400 0.009925448553985916 TEELRQYF 8 Unmodified _TEELRQYF_ 0 0 0 ENSG00000046647|ENST00000680255|GEMIN8;ENST00000460203.1_1_X:14032428-14038575:-|nuORF ENSG00000046647|ENST00000680255|GEMIN8 ENSG00000046647|ENST00000680255|GEMIN8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7947998046875 2 543.266739 1084.51892 0.74191 0.00040306 -0.04484 -2.436E-05 0.69707 0.0003787 543.2664274842398 103.83 0.60176 99.772 99.347 99.949 -4.0543 35 16 3 0 0 0 0.69031 1 19888 19888 15.847 1.0089 1 2197400 45145 1210 30051 30071 44401 44401 -0.019954377990416106 TEELYSSS 8 Unmodified _TEELYSSS_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2386474609375 2 458.20073 914.386907 NaN NaN NaN NaN NaN NaN NaN 59.158 1 56.248 55.748 56.748 -2.9105 0 0 0 0.21452 1 11367 11367 13.508 4.1604 1 45146 6711 30052 30072 44402 44402 -0.07371087606645688 TEELYSSS 8 Unmodified _TEELYSSS_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2373352050781 2 458.20073 914.386907 NaN NaN NaN NaN NaN NaN NaN 70.855 1 67.606 67.106 68.106 -3.2492 0 0 0 0.2343 1 13793 13793 0.12286 0 1 45147 6711 30052 30072 44403 44403 -0.07371087606645688 TEEMLFPSE 9 Unmodified _TEEMLFPSE_ 0 0 0 ENST00000456385.5_1_2:29397265-29397322:+|nuORF ENST00000456385.5_1_2:29397265-29397322:+|nuORF ENST00000456385.5_1_2:29397265-29397322:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2589721679688 2 541.739165 1081.46378 0.37752 0.00020452 0.74699 0.00040467 1.1245 0.00060919 541.7395099749572 26.452 0.68411 26.452 26.189 26.873 0 31 19 2 0 0 0 0.84208 1 4654 4654 7.2892 0 1 1339500 45148 10027 30053 30073 44404 44404 -0.07369612381830848 TEEMLFPSE 9 Unmodified _TEEMLFPSE_ 0 0 0 ENST00000456385.5_1_2:29397265-29397322:+|nuORF ENST00000456385.5_1_2:29397265-29397322:+|nuORF ENST00000456385.5_1_2:29397265-29397322:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2802124023438 2 541.739165 1081.46378 1.0192 0.00055216 -0.14298 -7.7456E-05 0.87626 0.0004747 541.7392230824922 28.303 0.51374 26.347 26.124 26.638 -1.9561 28 14 3 0 0 0 0.80521 1 5069 5069 10.824 3.5347 1 822260 45149 10027 30053 30073 44405 44405 -0.07369612381830848 TEENRYVGI 9 Unmodified _TEENRYVGI_ 0 0 0 REV__tr|U7SGN5|U7SGN5_FUSNUUracilphosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPE=3SV=1 REV__tr|U7SGN5|U7SGN5_FUSNUUracilphosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.279541015625 2 540.769645 1079.52474 0.042789 2.3139E-05 2.8169 0.0015233 2.8597 0.0015464 540.7715956130287 96.919 0.34169 93 92.818 93.159 -3.9194 14 9 2 0 0 0 0.48644 1 18580 18580 20.454 4.3045 1 970840 + 45150 24878 30054 30074 44406 44406 -0.011843392873743142 TEENRYVGI 9 Unmodified _TEENRYVGI_ 0 0 0 REV__tr|U7SGN5|U7SGN5_FUSNUUracilphosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPE=3SV=1 REV__tr|U7SGN5|U7SGN5_FUSNUUracilphosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.769645 1079.52474 0.24001 0.00012979 3.35 0.0018116 3.59 0.0019414 540.7713240358166 97.274 0.44949 93.176 92.839 93.289 -4.0978 0.086666 0.00012524 NaN 20.454 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1226700 + 45151 24878 30054 30074 -0.011843392873743142 TEENRYVGI 9 Unmodified _TEENRYVGI_ 0 0 0 REV__tr|U7SGN5|U7SGN5_FUSNUUracilphosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPE=3SV=1 REV__tr|U7SGN5|U7SGN5_FUSNUUracilphosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uppPE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.769645 1079.52474 0.042789 2.3139E-05 2.8169 0.0015233 2.8597 0.0015464 540.7715956130287 96.919 0.34169 93 92.818 93.159 -3.9194 -0.089744 -0.00045133 NaN 20.454 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 970840 + 45152 24878 30054 30074 -0.011843392873743142 TEEPFQRGD 9 Unmodified _TEEPFQRGD_ 0 0 0 sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1;sp|F5HC97|VPAP_HCMVMDNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL44PE=3SV=1 sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1 sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2019958496094 3 360.164844 1077.4727 NaN NaN NaN NaN NaN NaN NaN 125.54 1 120.94 120.44 121.44 -4.5984 0 0 0 0.23508 1 24751 24751 4.897 0 1 45153 25725 30055 30075 44407 44407 -0.06293502701123543 TEEQTPDPY 9 Unmodified _TEEQTPDPY_ 0 0 0 REV__CENPJ|p.Q357Tfs*28|1|0.25|ENSG00000151849|chr13:24907099-24907100|-/T|frameshift_variant REV__CENPJ|p.Q357Tfs*28|1|0.25|ENSG00000151849|chr13:24907099-24907100|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.19964599609375 3 360.489105 1078.44548 NaN NaN NaN NaN NaN NaN NaN 47.496 1 44.546 44.046 45.046 -2.9499 0 0 0 0.23508 1 8673 8673 2.7352 0 1 + 45154 13371 30056 30076 44408 44408 -0.09060031032186089 TEERRKLF 8 Unmodified _TEERRKLF_ 0 0 0 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2052307128906 3 360.204974 1077.59309 0.00036751 1.3238E-07 -0.18832 -6.7834E-05 -0.18795 -6.7702E-05 360.20482034451817 80.869 0.46352 77.029 76.869 77.332 -3.8392 18 12 2 0 0 0 0.89687 1 15330 15330 0.25148 0 1 465670 45155 6728 30057 30077 44409 44409 0.057399500831252226 TEESVIHN 8 Unmodified _TEESVIHN_ 0 0 0 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.240478515625 2 464.722164 927.429775 -0.029436 -1.368E-05 -0.97098 -0.00045124 -1.0004 -0.00046492 464.7217371117178 61.411 1.0738 58.45 58.071 59.145 -2.9614 51 30 2 0 0 0 0.31517 1 11846 11846 36.044 0 1 3479800 + 45156 16173 30058 30078 44410 44410 -0.036842727585622015 TEESVIHN 8 Unmodified _TEESVIHN_ 0 0 0 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.722164 927.429775 -0.14821 -6.8877E-05 -1.6606 -0.00077174 -1.8089 -0.00084062 464.721345234173 58.231 0.68899 58.231 57.928 58.617 0 -0.1947 -0.00031155 NaN 36.044 35 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1905300 + 45157 16173 30058 30078 -0.036842727585622015 TEESVIHN 8 Unmodified _TEESVIHN_ 0 0 0 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 REV__nc|ENSG00000133687|Q8IUR5-4|TMTC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.722164 927.429775 0.080907 3.7599E-05 -0.84272 -0.00039163 -0.76182 -0.00035403 464.7217326837562 61.909 0.98336 58.539 58.185 59.168 -3.3694 0.11321 0.00044866 NaN 36.044 48 27 2 NaN NaN NaN NaN 0 NaN NaN 0 3018400 + 45158 16173 30058 30078 -0.036842727585622015 TEETLKESF 9 Unmodified _TEETLKESF_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;NCL|p.D593G|1|0.32|ENSG00000115053|chr2:231456064-231456064|T/C|missense_variant;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7828979492188 2 542.263862 1082.51317 0.011584 6.2813E-06 0.0047106 2.5544E-06 0.016294 8.8357E-06 542.2637933307287 64.341 1.1756 64.341 63.749 64.924 0 110 33 4 0 0 0 0.11219 3 12402 12331;12368;12402 51.63 13.454 1 34766000 45159 2821;10069 30059 30079 44411;44412;44413 44413 -0.02478581101377131 TEETLKESF 9 Unmodified _TEETLKESF_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;NCL|p.D593G|1|0.32|ENSG00000115053|chr2:231456064-231456064|T/C|missense_variant;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7788696289062 2 542.263862 1082.51317 0.18533 0.0001005 -0.31847 -0.00017269 -0.13314 -7.2196E-05 542.2636264701433 67.513 1.0398 64.405 63.791 64.831 -3.1086 103 29 5 0 0 0 0.41266 1 13149 13149 24.991 6.8446 1 62367000 45160 2821;10069 30059 30079 44414 44414 -0.02478581101377131 TEETLKESF 9 Unmodified _TEETLKESF_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;NCL|p.D593G|1|0.32|ENSG00000115053|chr2:231456064-231456064|T/C|missense_variant;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7860107421875 2 542.263862 1082.51317 0.33865 0.00018364 -0.2362 -0.00012809 0.10245 5.5554E-05 542.2636390845257 67.931 0.94376 64.395 63.884 64.828 -3.5362 84 26 4 0 0 0 0.039965 1 12761 12761 67.838 42.957 1 38538000 45161 2821;10069 30059 30079 44415 44415 -0.02478581101377131 TEETLKESF 9 Unmodified _TEETLKESF_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;NCL|p.D593G|1|0.32|ENSG00000115053|chr2:231456064-231456064|T/C|missense_variant;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.263862 1082.51317 0.41139 0.00022308 -0.56298 -0.00030529 -0.15159 -8.2201E-05 542.2634661154613 67.686 1.1491 64.359 63.791 64.94 -3.3268 -0.015741 -0.00031258 NaN 67.838 107 32 5 NaN NaN NaN NaN 0 NaN NaN 0 49221000 45162 2821;10069 30059 30079 -0.02478581101377131 TEETLQEVF 9 Unmodified _TEETLQEVF_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.76708984375 2 548.263862 1094.51317 0.3266 0.00017906 0.052381 2.8719E-05 0.37898 0.00020778 548.2638771114606 129.58 0.99986 129.58 129.16 130.16 0 45 28 2 0 0 0 0.12542 1 25653 25653 47.749 36.925 1 5412600 45163 2821;10069 30060 30080 44416 44416 -0.030305811013704442 TEETLQEVF 9 Unmodified _TEETLQEVF_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7708740234375 2 548.263862 1094.51317 0.18428 0.00010104 0.081064 4.4444E-05 0.26535 0.00014548 548.2638664956137 134.27 0.9534 129.63 129.21 130.17 -4.6399 44 26 2 0 0 0 0.017753 1 26456 26456 120.45 72.105 1 8615000 45164 2821;10069 30060 30080 44417 44417 -0.030305811013704442 TEETLQEVF 9 Unmodified _TEETLQEVF_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.79345703125 2 548.263862 1094.51317 0.077498 4.249E-05 0.81255 0.00044549 0.89004 0.00048798 548.2640408685108 134.58 1.3626 129.7 129.26 130.63 -4.8726 63 38 3 0 0 0 0.54076 1 25887 25887 20.454 0 1 6539100 45165 2821;10069 30060 30080 44418 44418 -0.030305811013704442 TEETLQEVF 9 Unmodified _TEETLQEVF_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77001953125 2 548.263862 1094.51317 0.28572 0.00015665 0.053687 2.9435E-05 0.33941 0.00018608 548.2638468793718 134.55 0.77916 129.73 129.23 130.01 -4.8175 38 21 2 0 0 0 0.028313 1 25908 25908 108 59.651 1 5415400 45166 2821;10069 30060 30080 44419 44419 -0.030305811013704442 TEETPKNTY 9 Unmodified _TEETPKNTY_ 0 0 0 ENSG00000182261|ENST00000691676|NLRP10 ENSG00000182261|ENST00000691676|NLRP10 ENSG00000182261|ENST00000691676|NLRP10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7901611328125 2 541.753661 1081.49277 -0.0071135 -3.8537E-06 0.12259 6.6414E-05 0.11548 6.256E-05 541.7544902333074 47.156 1.8018 44.206 43.563 45.365 -2.9499 211 51 6 0 0 0 0.52396 1 8659 8659 18.146 0.011366 1 1168900000 45167 6778 30061 30081 44420 44420 -0.044717517611843505 TEEWAARHGF 10 Unmodified _TEEWAARHGF_ 0 0 0 REV__KLF3|p.Q227Afs*37|1|0.46|ENSG00000109787|chr4:38689854-38689855|-/C|frameshift_variant REV__KLF3|p.Q227Afs*37|1|0.46|ENSG00000109787|chr4:38689854-38689855|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2808837890625 2 602.280712 1202.54687 NaN NaN NaN NaN NaN NaN NaN 37.068 1 37.068 36.568 37.568 0 0 0 0 0.22588 1 6846 6846 6.7232 0 1 + 45168 23720 30062 30082 44421 44421 -0.04630114818974107 TEEWAARHGF 10 Unmodified _TEEWAARHGF_ 0 0 0 REV__KLF3|p.Q227Afs*37|1|0.46|ENSG00000109787|chr4:38689854-38689855|-/C|frameshift_variant REV__KLF3|p.Q227Afs*37|1|0.46|ENSG00000109787|chr4:38689854-38689855|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2810668945312 2 602.280712 1202.54687 NaN NaN NaN NaN NaN NaN NaN 39.52 1 37.115 36.615 37.615 -2.4049 0 0 0 0.22588 1 7055 7055 6.7232 1.4263 1 + 45169 23720 30062 30082 44422 44422 -0.04630114818974107 TEFAPPPTP 9 Unmodified _TEFAPPPTP_ 0 0 0 PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant;PYGO2|p.G109Afs*52|1|0.38|ENSG00000163348|chr1:154959674-154959674|C/-|frameshift_variant;PYGO2|p.F136Sfs*25|1|0.26|ENSG00000163348|chr1:154959595-154959595|G/-|frameshift_variant;PYGO2|p.Q150Pfs*27|2|0.31|ENSG00000163348|chr1:154959551-154959552|-/G|frameshift_variant;ENSG00000163348|ENST00000368457|PYGO2 PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7398376464844 2 478.739825 955.465098 -0.16905 -8.0932E-05 0.223 0.00010676 0.053949 2.5828E-05 478.7399213372384 88.246 1.1167 88.246 87.743 88.86 0 55 31 2 0 0 0 0.067773 2 17223 17223;17323 65.235 36.153 1 5329400 45170 5418 30063 30083 44423;44424 44423 -0.01441610230756396 TEFAPPPTP 9 Unmodified _TEFAPPPTP_ 0 0 0 PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant;PYGO2|p.G109Afs*52|1|0.38|ENSG00000163348|chr1:154959674-154959674|C/-|frameshift_variant;PYGO2|p.F136Sfs*25|1|0.26|ENSG00000163348|chr1:154959595-154959595|G/-|frameshift_variant;PYGO2|p.Q150Pfs*27|2|0.31|ENSG00000163348|chr1:154959551-154959552|-/G|frameshift_variant;ENSG00000163348|ENST00000368457|PYGO2 PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7399597167969 2 478.739825 955.465098 -0.0061266 -2.933E-06 0.01419 6.7934E-06 0.0080636 3.8604E-06 478.739841572029 92.617 1.1154 88.692 88.125 89.241 -3.9251 84 31 3 0 0 0 0.0038583 4 18153 18050;18106;18153;18203 115.69 63.424 1 4714600 45171 5418 30063 30083 44425;44426;44427;44428 44427 -0.01441610230756396 TEFAPPPTP 9 Unmodified _TEFAPPPTP_ 0 0 0 PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant;PYGO2|p.G109Afs*52|1|0.38|ENSG00000163348|chr1:154959674-154959674|C/-|frameshift_variant;PYGO2|p.F136Sfs*25|1|0.26|ENSG00000163348|chr1:154959595-154959595|G/-|frameshift_variant;PYGO2|p.Q150Pfs*27|2|0.31|ENSG00000163348|chr1:154959551-154959552|-/G|frameshift_variant;ENSG00000163348|ENST00000368457|PYGO2 PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7397766113281 2 478.739825 955.465098 0.25489 0.00012203 -0.13021 -6.2338E-05 0.12468 5.9688E-05 478.7397577464762 92.736 1.079 88.592 88.068 89.147 -4.1435 83 30 3 0 0 0 0.006766 3 17698 17599;17649;17698 111.29 52.608 1 3875500 45172 5418 30063 30083 44429;44430;44431 44431 -0.01441610230756396 TEFAPPPTP 9 Unmodified _TEFAPPPTP_ 0 0 0 PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant;PYGO2|p.G109Afs*52|1|0.38|ENSG00000163348|chr1:154959674-154959674|C/-|frameshift_variant;PYGO2|p.F136Sfs*25|1|0.26|ENSG00000163348|chr1:154959595-154959595|G/-|frameshift_variant;PYGO2|p.Q150Pfs*27|2|0.31|ENSG00000163348|chr1:154959551-154959552|-/G|frameshift_variant;ENSG00000163348|ENST00000368457|PYGO2 PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant PYGO2|p.Q150Rfs*11|1|0.37|ENSG00000163348|chr1:154959552-154959552|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7297058105469 2 478.739825 955.465098 0.08796 4.211E-05 0.12152 5.8178E-05 0.20948 0.00010029 478.73988056262385 92.409 1.1233 88.601 88.07 89.193 -3.8083 79 32 3 0 0 0 0.019872 5 17738 17667;17719;17738;17763;17811 92.491 40.223 1 4329000 45173 5418 30063 30083 44432;44433;44434;44435;44436 44434 -0.01441610230756396 TEFHAKEQY 9 Unmodified _TEFHAKEQY_ 0 0 0 ENSG00000140471|ENST00000314742|LINS1;ENST00000561073.1_1_15:101116892-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1 ENSG00000140471|ENST00000314742|LINS1 ENSG00000140471|ENST00000314742|LINS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3365478515625 2 576.769645 1151.52474 0.40085 0.0002312 0.14599 8.4201E-05 0.54684 0.0003154 576.7695723777305 28.895 0.31472 26.899 26.728 27.043 -1.9962 12 8 2 0 0 0 0.84208 1 4873 4873 11.64 0 1 419340 45174 4303 30064 30084 44437 44437 -0.04496339287379669 TEFHEDCY 8 Unmodified _TEFHEDCY_ 0 0 0 REV__nc|ENSG00000116785|Q02985-2|CFHR3 REV__nc|ENSG00000116785|Q02985-2|CFHR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6928100585938 2 522.192382 1042.37021 0.28754 0.00015015 -0.16427 -8.5779E-05 0.12327 6.437E-05 522.6944788521337 124.8 0.82037 120.15 119.78 120.6 -4.6495 68 22 5 0 0 0 0.76728 2 23993 23990;23993 5.7604 0.11691 1 3617800 + 45175 13390 30065 30085 44438;44439 44439 -0.14927911764243618 TEFIMNEY 8 Unmodified _TEFIMNEY_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7009887695312 2 523.7286 1045.44265 NaN NaN NaN NaN NaN NaN NaN 123.81 1 123.81 123.31 124.31 0 0 0 0 0.21452 1 24406 24406 13.508 4.1604 1 45176 899 30066 30086 44440 44440 -0.07825577690687169 TEFIMNEY 8 Unmodified _TEFIMNEY_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6781005859375 2 523.7286 1045.44265 -0.13618 -7.1324E-05 1.1449 0.00059961 1.0087 0.00052828 523.7290781601113 128.66 0.63785 124.03 123.69 124.33 -4.6292 20 17 2 0 0 0 0.68128 1 25363 25363 16.942 1.0951 1 2014300 45177 899 30066 30086 44441 44441 -0.07825577690687169 TEFIMNEY 8 Unmodified _TEFIMNEY_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.7286 1045.44265 -0.43438 -0.0002275 1.0565 0.00055334 0.62215 0.00032584 524.230476616648 128.91 0.49194 124.09 123.81 124.3 -4.817 0.031594 -2.9866E-05 NaN 16.942 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1576800 45178 899 30066 30086 -0.07825577690687169 TEFPGVVV 8 Unmodified _TEFPGVVV_ 0 0 0 ENST00000521583.5_1_5:154238316-154247291:+|nuORF;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8 ENST00000521583.5_1_5:154238316-154247291:+|nuORF ENST00000521583.5_1_5:154238316-154247291:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 424.7789001464844 2 424.231636 846.448719 0.066965 2.8409E-05 0.31796 0.00013489 0.38492 0.0001633 424.23170557293673 143.5 1.985 138.47 137.51 139.5 -5.0261 105 56 3 0 0 0 0.55462 1 27561 27561 18.373 15.73 1 7598700 45179 5047 30067 30087 44442 44442 0.019353086031514977 TEFPGVVV 8 Unmodified _TEFPGVVV_ 0 0 0 ENST00000521583.5_1_5:154238316-154247291:+|nuORF;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8 ENST00000521583.5_1_5:154238316-154247291:+|nuORF ENST00000521583.5_1_5:154238316-154247291:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2353820800781 2 424.231636 846.448719 0.0097104 4.1195E-06 0.35083 0.00014883 0.36054 0.00015295 424.2317242179217 143.27 1.6919 138.38 137.52 139.21 -4.8982 98 47 3 0 0 0 0.40661 2 27638 27583;27638 32.117 11.246 1 5612400 45180 5047 30067 30087 44443;44444 44444 0.019353086031514977 TEFPGVVV 8 Unmodified _TEFPGVVV_ 0 0 0 ENST00000521583.5_1_5:154238316-154247291:+|nuORF;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8 ENST00000521583.5_1_5:154238316-154247291:+|nuORF ENST00000521583.5_1_5:154238316-154247291:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 424.231636 846.448719 0.097144 4.1212E-05 0.22702 9.6308E-05 0.32416 0.00013752 424.2317149105818 138.25 1.7439 138.25 137.52 139.26 0 -0.062131 -5.5278E-05 NaN 32.117 77 49 2 NaN NaN NaN NaN 0 NaN NaN 0 6854400 45181 5047 30067 30087 0.019353086031514977 TEFPGVVV 8 Unmodified _TEFPGVVV_ 0 0 0 ENST00000521583.5_1_5:154238316-154247291:+|nuORF;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8 ENST00000521583.5_1_5:154238316-154247291:+|nuORF ENST00000521583.5_1_5:154238316-154247291:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 424.231636 846.448719 -0.093481 -3.9658E-05 0.32568 0.00013816 0.2322 9.8507E-05 424.2316937594893 143.31 1.6964 138.65 137.65 139.34 -4.656 0.089469 3.8425E-06 NaN 18.373 99 48 3 NaN NaN NaN NaN 0 NaN NaN 0 15124000 45182 5047 30067 30087 0.019353086031514977 TEFPNFKY 8 Unmodified _TEFPNFKY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6890258789062 2 523.2531 1044.49165 0.1789 9.3612E-05 -0.61882 -0.0003238 -0.43991 -0.00023019 523.2530759916165 119.08 1.5028 119.08 118.43 119.94 0 136 42 5 0 0 0 0.044961 5 23458 23365;23369;23377;23458;23568 103.75 63.799 1 28562000 45183 3722 30068 30088 44445;44446;44447;44448;44449 44448 -0.02881921339417204 TEFPNFKY 8 Unmodified _TEFPNFKY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6893310546875 2 523.2531 1044.49165 -0.014062 -7.3582E-06 -0.1594 -8.3408E-05 -0.17347 -9.0766E-05 523.2531148046733 123.89 1.6177 119.31 118.56 120.18 -4.5757 153 45 5 0 0 0 0.032794 6 24408 24333;24336;24363;24364;24408;24494 128.37 85.397 1 31549000 45184 3722 30068 30088 44450;44451;44452;44453;44454;44455 44454 -0.02881921339417204 TEFPNFKY 8 Unmodified _TEFPNFKY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.693603515625 2 523.2531 1044.49165 -0.16805 -8.7931E-05 0.096665 5.058E-05 -0.071382 -3.7351E-05 523.2532395744826 123.94 1.9385 119.21 118.5 120.44 -4.731 161 54 4 0 0 0 8448 1 23697 23697 29.841 26.248 1 27567000 45185 3722 30068 30088 44456 44456 -0.02881921339417204 TEFPNFKY 8 Unmodified _TEFPNFKY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.2531 1044.49165 -0.16805 -8.7931E-05 0.096665 5.058E-05 -0.071382 -3.7351E-05 523.2532395744826 123.94 1.9385 119.21 118.5 120.44 -4.731 0.01773 0.0003852 NaN 128.37 161 54 4 NaN NaN NaN NaN 0 NaN NaN 0 27567000 45186 3722 30068 30088 -0.02881921339417204 TEFPNVVQM 9 Unmodified _TEFPNVVQM_ 0 0 0 ENSG00000076864|ENST00000374765|RAP1GAP;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP ENSG00000076864|ENST00000374765|RAP1GAP ENSG00000076864|ENST00000374765|RAP1GAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2863159179688 2 532.757692 1063.50083 0.14516 7.7334E-05 -0.38025 -0.00020258 -0.23509 -0.00012525 532.7572941177333 146.03 0.62839 141.35 140.81 141.44 -4.6868 27 17 2 0 0 0 0.09885 1 28870 28870 56.177 3.9087 1 2769600 45187 1546 30069 30089 44457 44457 -0.028378960453892432 TEFPNVVQM 9 Unmodified _TEFPNVVQM_ 0 0 0 ENSG00000076864|ENST00000374765|RAP1GAP;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP ENSG00000076864|ENST00000374765|RAP1GAP ENSG00000076864|ENST00000374765|RAP1GAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2684936523438 2 532.757692 1063.50083 0.50751 0.00027038 -0.56393 -0.00030044 -0.056423 -3.006E-05 532.7575838883245 146.14 0.48354 141.03 140.93 141.41 -5.1108 21 13 2 0 0 0 0.09885 1 28301 28301 56.177 25.541 1 2792600 45188 1546 30069 30089 44458 44458 -0.028378960453892432 TEFPSKQVF 9 Unmodified _TEFPSKQVF_ 0 0 0 ENST00000535871.1_1_12:6958551-6959649:-|nuORF;ENST00000544610.1_1_12:6958209-6958939:-|nuORF;ENST00000536241.1_1_12:6958687-6959760:-|nuORF;ENST00000545368.5_1_12:6958360-6960430:-|nuORF;ENSG00000111665|ENST00000538862|CDCA3 ENST00000535871.1_1_12:6958551-6959649:-|nuORF ENST00000535871.1_1_12:6958551-6959649:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2642211914062 2 541.779482 1081.54441 0.076093 4.1226E-05 0.076477 4.1434E-05 0.15257 8.2659E-05 541.7794742361004 93.706 1.2203 93.706 93.059 94.279 0 64 34 2 0 0 0 0.66788 1 18420 18420 17.113 0.1706 1 2771700 45189 2631 30070 30090 44459 44459 0.0069003672338112665 TEFPSKQVF 9 Unmodified _TEFPSKQVF_ 0 0 0 ENST00000535871.1_1_12:6958551-6959649:-|nuORF;ENST00000544610.1_1_12:6958209-6958939:-|nuORF;ENST00000536241.1_1_12:6958687-6959760:-|nuORF;ENST00000545368.5_1_12:6958360-6960430:-|nuORF;ENSG00000111665|ENST00000538862|CDCA3 ENST00000535871.1_1_12:6958551-6959649:-|nuORF ENST00000535871.1_1_12:6958551-6959649:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2815551757812 2 541.779482 1081.54441 0.22402 0.00012137 -0.32133 -0.00017409 -0.097305 -5.2718E-05 541.7792947753687 98.171 1.3752 93.902 92.817 94.192 -4.2692 59 39 2 0 0 0 0.545 1 18619 18619 36.506 27.123 1 3336000 45190 2631 30070 30090 44460 44460 0.0069003672338112665 TEFPSKQVF 9 Unmodified _TEFPSKQVF_ 0 0 0 ENST00000535871.1_1_12:6958551-6959649:-|nuORF;ENST00000544610.1_1_12:6958209-6958939:-|nuORF;ENST00000536241.1_1_12:6958687-6959760:-|nuORF;ENST00000545368.5_1_12:6958360-6960430:-|nuORF;ENSG00000111665|ENST00000538862|CDCA3 ENST00000535871.1_1_12:6958551-6959649:-|nuORF ENST00000535871.1_1_12:6958551-6959649:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2802734375 2 541.779482 1081.54441 0.12354 6.6929E-05 -0.1605 -8.6954E-05 -0.036962 -2.0025E-05 541.7792922206145 97.636 1.2449 93.716 92.953 94.198 -3.9194 54 35 3 0 0 0 0.45788 1 18640 18640 39.95 24.103 1 4718300 45191 2631 30070 30090 44461 44461 0.0069003672338112665 TEFQTLLAR 9 Unmodified _TEFQTLLAR_ 0 0 0 REV__ENSG00000170234|ENST00000307063|PWWP2A REV__ENSG00000170234|ENST00000307063|PWWP2A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013854980469 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 63.011 1 60.013 59.513 60.513 -2.9975 0 0 0 0.23508 1 12163 12163 6.6304 2.1015 1 + 45192 18148 30071 30091 44462 44462 0.0461712798901317 TEFSEGLVY 9 Unmodified _TEFSEGLVY_ 0 0 0 REV__ENSG00000018510|ENST00000264167|AGPS REV__ENSG00000018510|ENST00000264167|AGPS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.272705078125 2 522.747847 1043.48114 -0.35555 -0.00018586 1.2408 0.00064861 0.88521 0.00046274 522.7478496153601 113.2 0.75372 108.75 108.4 109.15 -4.4538 44 20 3 0 0 0 0.69192 1 22362 22362 14.838 0.25658 1 1970800 + 45193 13972 30072 30092 44463 44463 -0.03885948784522952 TEFSKLHNF 9 Unmodified _TEFSKLHNF_ 0 0 0 nc|ENSG00000146833|Q9C037-3|TRIM4;TRIM4|p.N373Tfs*57|1|0.3|ENSG00000146833|chr7:99892548-99892548|T/-|frameshift_variant;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037|TRIM4;ENST00000496896.1_1_7:99506123-99507211:-|nuORF nc|ENSG00000146833|Q9C037-3|TRIM4 nc|ENSG00000146833|Q9C037-3|TRIM4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.210205078125 3 374.857463 1121.55056 -0.29721 -0.00011141 0.52894 0.00019828 0.23172 8.6863E-05 374.85765861950927 75.205 0.51837 71.841 71.45 71.969 -3.3643 24 14 2 0 0 0 0.72996 2 14615 14607;14615 4.897 0.59211 1 1071200 45194 4673 30073 30093 44464;44465 44465 -0.005354450451022785 TEFSKLHNF 9 Unmodified _TEFSKLHNF_ 0 0 0 nc|ENSG00000146833|Q9C037-3|TRIM4;TRIM4|p.N373Tfs*57|1|0.3|ENSG00000146833|chr7:99892548-99892548|T/-|frameshift_variant;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037|TRIM4;ENST00000496896.1_1_7:99506123-99507211:-|nuORF nc|ENSG00000146833|Q9C037-3|TRIM4 nc|ENSG00000146833|Q9C037-3|TRIM4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 374.857463 1121.55056 -0.26488 -9.9291E-05 0.094896 3.5572E-05 -0.16998 -6.3719E-05 374.85744206568205 71.761 0.6385 71.761 71.349 71.988 0 0.0037255 -0.00022592 NaN 4.897 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1412800 45195 4673 30073 30093 -0.005354450451022785 TEFSKLHNF 9 Unmodified _TEFSKLHNF_ 0 0 0 nc|ENSG00000146833|Q9C037-3|TRIM4;TRIM4|p.N373Tfs*57|1|0.3|ENSG00000146833|chr7:99892548-99892548|T/-|frameshift_variant;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037|TRIM4;ENST00000496896.1_1_7:99506123-99507211:-|nuORF nc|ENSG00000146833|Q9C037-3|TRIM4 nc|ENSG00000146833|Q9C037-3|TRIM4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 374.857463 1121.55056 -0.41709 -0.00015635 0.22522 8.4424E-05 -0.19188 -7.1927E-05 374.857596074544 75.303 0.49347 71.67 71.433 71.927 -3.6337 -0.087654 -7.9364E-05 NaN 4.897 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1152800 45196 4673 30073 30093 -0.005354450451022785 TEFSYIDL 8 Unmodified _TEFSYIDL_ 0 0 0 tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1 tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1 tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 990.412841796875 1 987.466955 986.459678 0.26129 0.00025802 -0.22941 -0.00022653 0.031886 3.1486E-05 987.466607132469 112.93 1.3333 108.4 107.66 108.99 -4.5259 94 37 4 0 0 0 0.64227 1 21639 21639 19.439 1.304 1 37870000 45197 25876 30074 30094 44466 44466 -0.03409333813226567 TEFYHVPTH 9 Unmodified _TEFYHVPTH_ 0 0 0 PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant;nc|ENSG00000163110|Q96HC4-3|PDLIM5;nc|ENSG00000163110|Q96HC4-2|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5 PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 378.1830139160156 3 377.513696 1129.51926 0.13333 5.0336E-05 -0.037422 -1.4127E-05 0.095912 3.6208E-05 377.51367212508967 62.327 0.5699 58.958 58.671 59.24 -3.3694 36 15 3 0 0 0 0.62314 1 11598 11598 11.495 3.8858 1 2334400 45198 5401 30075 30095 44467 44467 -0.04032018079192312 TEFYHVPTH 9 Unmodified _TEFYHVPTH_ 0 0 0 PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant;nc|ENSG00000163110|Q96HC4-3|PDLIM5;nc|ENSG00000163110|Q96HC4-2|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5 PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 377.513696 1129.51926 -0.4509 -0.00017022 0.54043 0.00020402 0.089537 3.3801E-05 377.51385137794875 58.871 0.59432 58.871 58.547 59.141 0 -0.05064 0.00017824 NaN 11.495 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1534200 45199 5401 30075 30095 -0.04032018079192312 TEFYHVPTH 9 Unmodified _TEFYHVPTH_ 0 0 0 PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant;nc|ENSG00000163110|Q96HC4-3|PDLIM5;nc|ENSG00000163110|Q96HC4-2|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5 PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 377.513696 1129.51926 -0.17966 -6.7824E-05 0.33158 0.00012517 0.15192 5.7351E-05 377.5138039883253 61.923 0.59995 58.961 58.688 59.288 -2.9614 0.039406 -5.8293E-05 NaN 11.495 38 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2990100 45200 5401 30075 30095 -0.04032018079192312 TEFYHVPTH 9 Unmodified _TEFYHVPTH_ 0 0 0 PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant;nc|ENSG00000163110|Q96HC4-3|PDLIM5;nc|ENSG00000163110|Q96HC4-2|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5 PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 377.513696 1129.51926 -0.47328 -0.00017867 0.7794 0.00029423 0.30611 0.00011556 377.5139302066764 62.137 0.619 58.898 58.554 59.173 -3.2395 -0.02438 0.00044888 NaN 11.495 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3264600 45201 5401 30075 30095 -0.04032018079192312 TEGASSWPP 9 Unmodified _TEGASSWPP_ 0 0 0 ENST00000406386.7_1_22:38170154-38170496:+|nuORF ENST00000406386.7_1_22:38170154-38170496:+|nuORF ENST00000406386.7_1_22:38170154-38170496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.1981506347656 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 39.99 1 37.45 36.95 37.95 -2.5398 0 0 0 0.23508 1 7155 7155 1.1933 0 1 45202 9541 30076 30096 44468 44468 -0.05967657787277858 TEGASSWPP 9 Unmodified _TEGASSWPP_ 0 0 0 ENST00000406386.7_1_22:38170154-38170496:+|nuORF ENST00000406386.7_1_22:38170154-38170496:+|nuORF ENST00000406386.7_1_22:38170154-38170496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2005920410156 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 27.156 1 25.234 24.734 25.734 -1.9222 0 0 0 0.23508 1 4526 4526 1.1933 0 1 45203 9541 30076 30096 44469 44469 -0.05967657787277858 TEGDRVEIY 9 Unmodified _TEGDRVEIY_ 0 0 0 REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2819213867188 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 54.402 1 54.402 53.902 54.902 0 0 0 0 0.20628 1 10374 10374 21.747 2.4897 1 + 45204 13614 30077 30097 44470 44470 -0.028280455242793323 TEGGILVH 8 Unmodified _TEGGILVH_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 413.19207763671875 2 413.226885 824.439217 -0.47735 -0.00019726 0.67355 0.00027833 0.19619 8.1073E-05 413.2271313429304 48.319 0.79976 45.369 44.879 45.679 -2.9499 44 22 3 0 0 0 0.72861 1 8899 8899 10.183 3.8293 1 4636200 45205 4590 30078 30098 44471 44471 0.019975403176204054 TEGGILVH 8 Unmodified _TEGGILVH_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 413.226885 824.439217 0.34662 0.00014323 -0.22949 -9.4829E-05 0.11714 4.8405E-05 413.2267221909601 45.394 0.63457 45.394 45.057 45.691 0 0.042682 -0.00036839 NaN 10.183 43 17 3 NaN NaN NaN NaN 0 NaN NaN 0 5986900 45206 4590 30078 30098 0.019975403176204054 TEGGILVH 8 Unmodified _TEGGILVH_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 413.226885 824.439217 -0.2488 -0.00010281 0.41387 0.00017102 0.16507 6.8211E-05 413.22701837657155 48.17 0.64256 45.301 44.91 45.552 -2.869 -0.049423 0.00016332 NaN 10.183 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 5928300 45207 4590 30078 30098 0.019975403176204054 TEGGILVH 8 Unmodified _TEGGILVH_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 413.226885 824.439217 -0.0094833 -3.9188E-06 0.2226 9.1985E-05 0.21312 8.8066E-05 413.22691940514864 48.282 0.88035 45.34 44.899 45.78 -2.9421 -0.011294 5.2396E-06 NaN 10.183 49 24 3 NaN NaN NaN NaN 0 NaN NaN 0 5499300 45208 4590 30078 30098 0.019975403176204054 TEGKVGYELK 10 Unmodified _TEGKVGYELK_ 0 0 0 nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31 nc|ENSG00000105618|Q8WWY3-2|PRPF31 nc|ENSG00000105618|Q8WWY3-2|PRPF31 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2042236328125 3 375.20464 1122.59209 NaN NaN NaN NaN NaN NaN NaN 36.623 1 36.623 36.123 37.123 0 0 0 0 0.22588 1 6757 6757 3.3196 0.58445 1 45209 12272 30079 30099 44472 44472 0.035696909235639396 TEGLADPEV 9 Unmodified _TEGLADPEV_ 0 0 0 ENSG00000198690|ENST00000362065|FAN1;ENST00000565280.5_1_15:31198658-31229456:+|nuORF ENSG00000198690|ENST00000362065|FAN1 ENSG00000198690|ENST00000362065|FAN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2589111328125 2 465.724372 929.434192 0.36015 0.00016773 -0.44764 -0.00020848 -0.087491 -4.0747E-05 465.72405293532927 42.992 0.59089 42.992 42.771 43.362 0 26 16 2 0 0 0 0.76271 1 8111 8111 10.074 0 1 797640 45210 7473 30080 30100 44473 44473 -0.0333480833566 TEGLLRIPG 9 Unmodified _TEGLLRIPG_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7276916503906 2 478.282192 954.549831 0.29566 0.00014141 -0.26759 -0.00012798 0.028077 1.3429E-05 478.28191799284025 103.16 0.5452 103.16 102.76 103.31 0 21 15 2 0 0 0 0.58077 1 20199 20199 20.454 2.3073 1 1137300 45211 4649 30081 30101 44474 44474 0.0707376030584328 TEGLPSYR 8 Unmodified _TEGLPSYR_ 0 0 0 POM121L2|p.H949Y|1|0.47|ENSG00000158553|chr6:27309326-27309326|G/A|missense_variant POM121L2|p.H949Y|1|0.47|ENSG00000158553|chr6:27309326-27309326|G/A|missense_variant POM121L2|p.H949Y|1|0.47|ENSG00000158553|chr6:27309326-27309326|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.54339599609375 2 461.735074 921.455596 NaN NaN NaN NaN NaN NaN NaN 61.723 1 58.762 58.262 59.262 -2.9614 0 0 0 0.20618 1 11903 11903 20.454 0 1 45212 12815 30082 30102 44475 44475 -0.008273785162828062 TEGPRSLY 8 Unmodified _TEGPRSLY_ 0 0 0 ENSG00000175567|ENST00000663595|UCP2 ENSG00000175567|ENST00000663595|UCP2 ENSG00000175567|ENST00000663595|UCP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5346984863281 2 461.735074 921.455596 0.00076254 3.5209E-07 0.21818 0.00010074 0.21894 0.00010109 461.73513711009315 42.486 0.98109 39.88 39.577 40.558 -2.606 73 27 4 0 0 0 0.81042 1 7705 7705 11.64 0 1 61681000 45213 6421 30083 30103 44476 44476 -0.008273785162828062 TEHDLLGTEA 10 Unmodified _TEHDLLGTEA_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7791137695312 2 543.259111 1084.50367 0.024227 1.3162E-05 0.89713 0.00048737 0.92135 0.00050053 543.2592356796606 61.827 0.57663 61.827 61.563 62.14 0 33 16 3 0 0 0 0.78938 1 11816 11816 27.629 20.906 1 3168800 45214 7405 30084 30104 44477 44477 -0.0352034938689485 TEHDLLGTEA 10 Unmodified _TEHDLLGTEA_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7791748046875 2 543.259111 1084.50367 0.38596 0.00020968 -0.25755 -0.00013992 0.12841 6.976E-05 543.2589457535539 64.822 0.64949 61.539 61.21 61.86 -3.2832 46 18 3 0 0 0 0.0023783 2 12165 12165;12187 111.29 73.313 1 3243300 45215 7405 30084 30104 44478;44479 44478 -0.0352034938689485 TEHDLLGTEA 10 Unmodified _TEHDLLGTEA_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.259111 1084.50367 0.25489 0.00013847 -0.030254 -1.6436E-05 0.22463 0.00012203 543.2588164742695 64.468 0.5583 61.471 61.219 61.778 -2.9975 -0.13529 -3.6996E-05 NaN 111.29 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2631400 45216 7405 30084 30104 -0.0352034938689485 TEHESFTA 8 Unmodified _TEHESFTA_ 0 0 0 RALB|p.E106K|1|0.18|ENSG00000144118|chr2:120286075-120286075|G/A|missense_variant;ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB RALB|p.E106K|1|0.18|ENSG00000144118|chr2:120286075-120286075|G/A|missense_variant RALB|p.E106K|1|0.18|ENSG00000144118|chr2:120286075-120286075|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5330810546875 2 461.201064 920.387576 NaN NaN NaN NaN NaN NaN NaN 28.599 1 28.599 28.099 29.099 0 0 0 0 0.02669 1 5084 5084 60.39 29.753 1 45217 4541 30085 30105 44480 44480 -0.07580248166937054 TEHESFTA 8 Unmodified _TEHESFTA_ 0 0 0 RALB|p.E106K|1|0.18|ENSG00000144118|chr2:120286075-120286075|G/A|missense_variant;ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB RALB|p.E106K|1|0.18|ENSG00000144118|chr2:120286075-120286075|G/A|missense_variant RALB|p.E106K|1|0.18|ENSG00000144118|chr2:120286075-120286075|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5244140625 2 461.201064 920.387576 0.5349 0.0002467 -0.83179 -0.00038362 -0.29689 -0.00013693 461.20066393239273 30.474 0.42076 28.4 28.22 28.641 -2.0743 18 11 2 0 0 0 0.16192 1 5213 5213 50.855 23.971 1 597990 45218 4541 30085 30105 44481 44481 -0.07580248166937054 TEHESFTA 8 Unmodified _TEHESFTA_ 0 0 0 RALB|p.E106K|1|0.18|ENSG00000144118|chr2:120286075-120286075|G/A|missense_variant;ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB RALB|p.E106K|1|0.18|ENSG00000144118|chr2:120286075-120286075|G/A|missense_variant RALB|p.E106K|1|0.18|ENSG00000144118|chr2:120286075-120286075|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.201064 920.387576 0.36356 0.00016767 -0.87824 -0.00040505 -0.51468 -0.00023737 461.20059863178045 30.571 0.46002 28.454 28.259 28.719 -2.1167 -0.002933 -8.0759E-05 NaN 50.855 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1152600 45219 4541 30085 30105 -0.07580248166937054 TEHESFTA 8 Unmodified _TEHESFTA_ 0 0 0 RALB|p.E106K|1|0.18|ENSG00000144118|chr2:120286075-120286075|G/A|missense_variant;ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB RALB|p.E106K|1|0.18|ENSG00000144118|chr2:120286075-120286075|G/A|missense_variant RALB|p.E106K|1|0.18|ENSG00000144118|chr2:120286075-120286075|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.201064 920.387576 0.27994 0.00012911 -0.5849 -0.00026976 -0.30496 -0.00014065 461.20075829234094 30.41 0.42041 28.517 28.312 28.732 -1.8928 0.060039 0.00018982 NaN 50.855 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 878170 45220 4541 30085 30105 -0.07580248166937054 TEHINQAVV 9 Unmodified _TEHINQAVV_ 0 0 0 REV__ENSG00000185950|ENST00000375856|IRS2 REV__ENSG00000185950|ENST00000375856|IRS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.842041015625 3 337.513696 1009.51926 -0.47341 -0.00015978 0.42141 0.00014223 -0.052002 -1.7551E-05 337.51382227171104 17.769 1.0049 16.458 15.682 16.686 -1.3109 53 28 2 0 0 0 0.45972 1 2789 2789 8.1555 0 1 1682300 + 45221 18999 30086 30106 44482 44482 0.014879819208204026 TEHINQAVV 9 Unmodified _TEHINQAVV_ 0 0 0 REV__ENSG00000185950|ENST00000375856|IRS2 REV__ENSG00000185950|ENST00000375856|IRS2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 337.513696 1009.51926 -0.47341 -0.00015978 0.42141 0.00014223 -0.052002 -1.7551E-05 337.51382227171104 17.769 1.0049 16.458 15.682 16.686 -1.3109 -0.014379 -7.2329E-05 NaN 8.1555 53 28 2 NaN NaN NaN NaN 0 NaN NaN 0 1682300 + 45222 18999 30086 30106 0.014879819208204026 TEHINQAVV 9 Unmodified _TEHINQAVV_ 0 0 0 REV__ENSG00000185950|ENST00000375856|IRS2 REV__ENSG00000185950|ENST00000375856|IRS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 337.513696 1009.51926 -0.4284 -0.00014459 0.46016 0.00015531 0.031758 1.0719E-05 337.51380725325015 17.68 0.93107 16.408 15.731 16.662 -1.2722 -0.063925 -3.3097E-05 NaN 8.1555 43 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1176000 + 45223 18999 30086 30106 0.014879819208204026 TEHLHPDL 8 Unmodified _TEHLHPDL_ 0 0 0 ENST00000487563.1_1_7:100853563-100853710:-|nuORF;ENST00000460132.5_1_7:100853286-100853899:-|nuORF;ENSG00000106397|ENST00000223127|PLOD3 ENST00000487563.1_1_7:100853563-100853710:-|nuORF;ENST00000460132.5_1_7:100853286-100853899:-|nuORF ENST00000460132.5_1_7:100853286-100853899:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2392578125 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 145.31 1 145.31 144.81 145.81 0 0 0 0 0.23107 1 29039 29039 1.7423 1.669 1 45224 10471;2381 30087 30107 44483 44483 -0.015319761420073519 TEHNSGTSHLP 11 Unmodified _TEHNSGTSHLP_ 0 0 0 ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.273681640625 2 590.273084 1178.53161 0.33562 0.0001981 -0.73116 -0.00043158 -0.39554 -0.00023348 590.2731398516729 21.214 0.54599 21.214 20.816 21.362 0 17 15 2 0 0 0 0.48776 1 3530 3530 23.801 4.5441 1 356750 45225 3927 30088 30108 44484 44484 -0.05051026406795245 TEHNSGTSHLP 11 Unmodified _TEHNSGTSHLP_ 0 0 0 ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2728271484375 2 590.273084 1178.53161 NaN NaN NaN NaN NaN NaN NaN 21.388 1 21.388 20.888 21.888 0 0 0 0 0.22842 1 3577 3577 9.544 0.79857 1 45226 3927 30088 30108 44485 44485 -0.05051026406795245 TEHNSGTSHLP 11 Unmodified _TEHNSGTSHLP_ 0 0 0 ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2733154296875 2 590.273084 1178.53161 NaN NaN NaN NaN NaN NaN NaN 22.561 1 21.008 20.508 21.508 -1.5532 0 0 0 0.18809 1 3861 3861 21.59 2.3332 1 45227 3927 30088 30108 44486 44486 -0.05051026406795245 TEHNSGTSHLP 11 Unmodified _TEHNSGTSHLP_ 0 0 0 ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2736206054688 2 590.273084 1178.53161 NaN NaN NaN NaN NaN NaN NaN 22.425 1 20.971 20.471 21.471 -1.4535 0 0 0 0.2018 1 3574 3574 18.373 3.5348 1 45228 3927 30088 30108 44487 44487 -0.05051026406795245 TEHNSGTSHLP 11 Unmodified _TEHNSGTSHLP_ 0 0 0 ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2731323242188 2 590.273084 1178.53161 NaN NaN NaN NaN NaN NaN NaN 22.672 1 21.218 20.718 21.718 -1.4535 0 0 0 0.19646 1 3623 3623 19.626 5.7199 1 45229 3927 30088 30108 44488 44488 -0.05051026406795245 TEHNSGTSHLP 11 Unmodified _TEHNSGTSHLP_ 0 0 0 ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.273193359375 2 590.273084 1178.53161 NaN NaN NaN NaN NaN NaN NaN 22.684 1 20.896 20.396 21.396 -1.7886 0 0 0 0.19239 1 3613 3613 20.581 1.3239 1 45230 3927 30088 30108 44489 44489 -0.05051026406795245 TEHRSYEY 8 Unmodified _TEHRSYEY_ 0 0 0 ZNF709|p.K312Nfs*44|1|0.18|ENSG00000242852|chr19:12464986-12464986|T/-|frameshift_variant;ZNF709|p.K278Nfs*78|1|0.14|ENSG00000242852|chr19:12465088-12465088|T/-|frameshift_variant;ENSG00000242852|ENST00000397732|ZNF709 ZNF709|p.K312Nfs*44|1|0.18|ENSG00000242852|chr19:12464986-12464986|T/-|frameshift_variant ZNF709|p.K312Nfs*44|1|0.18|ENSG00000242852|chr19:12464986-12464986|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7825317382812 2 542.738345 1083.46214 0.007191 3.9029E-06 0.49205 0.00026705 0.49924 0.00027096 542.7384761822179 48.88 1.1104 45.874 45.029 46.139 -3.0068 50 31 3 0 0 0 0.71273 1 8966 8966 12.532 0 1 3220000 45231 7868 30089 30109 44490 44490 -0.07625485355561068 TEHSSEHHQYG 11 Unmodified _TEHSSEHHQYG_ 0 0 0 REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.8831787109375 3 437.849807 1310.52759 NaN NaN NaN NaN NaN NaN NaN 5.129 1 4.0891 3.5891 4.5891 -1.04 0 0 0 0.23698 1 217 217 0 0 1 + 45232 21817 30090 30110 44491 44491 -0.11525115900508354 TEIAHNMN 8 Unmodified _TEIAHNMN_ 0 0 0 REV__ENSG00000102221|ENST00000614628|JADE3;REV__JADE1|p.R394Gfs*20|2|0.47|ENSG00000077684|chr4:128861897-128861897|C/-|frameshift_variant REV__ENSG00000102221|ENST00000614628|JADE3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24554443359375 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 76.321 1 72.687 72.187 73.187 -3.6337 0 0 0 0.22676 1 14528 14528 0.063987 0 1 + 45233 14828;23688 30091 30111 44492 44492 -0.05980195427844137 TEIGSIHSA 9 Unmodified _TEIGSIHSA_ 0 0 0 ENST00000551692.5_1_14:105834472-105850026:+|nuORF;nc|ENSG00000179364|Q86VP3-4|PACS2;nc|ENSG00000179364|Q86VP3|PACS2;ENSG00000179364|ENST00000447393|PACS2 ENST00000551692.5_1_14:105834472-105850026:+|nuORF ENST00000551692.5_1_14:105834472-105850026:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2340393066406 2 457.732532 913.45051 0.33897 0.00015516 -0.16962 -7.7641E-05 0.16935 7.7515E-05 457.73241257039155 37.383 0.7933 37.383 36.957 37.751 0 63 22 4 0 0 0 0.00011526 2 6928 6881;6928 125.62 51.202 1 19285000 45234 6628 30092 30112 44493;44494 44494 -0.009676823789050104 TEIGSIHSA 9 Unmodified _TEIGSIHSA_ 0 0 0 ENST00000551692.5_1_14:105834472-105850026:+|nuORF;nc|ENSG00000179364|Q86VP3-4|PACS2;nc|ENSG00000179364|Q86VP3|PACS2;ENSG00000179364|ENST00000447393|PACS2 ENST00000551692.5_1_14:105834472-105850026:+|nuORF ENST00000551692.5_1_14:105834472-105850026:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2339782714844 2 457.732532 913.45051 -0.36136 -0.00016541 0.50496 0.00023113 0.1436 6.5728E-05 457.7327531807679 39.844 0.91867 37.295 36.896 37.815 -2.5491 72 25 4 0 0 0 0.023387 2 7373 7373;7467 88.904 21.56 1 26305000 45235 6628 30092 30112 44495;44496 44495 -0.009676823789050104 TEIGSIHSA 9 Unmodified _TEIGSIHSA_ 0 0 0 ENST00000551692.5_1_14:105834472-105850026:+|nuORF;nc|ENSG00000179364|Q86VP3-4|PACS2;nc|ENSG00000179364|Q86VP3|PACS2;ENSG00000179364|ENST00000447393|PACS2 ENST00000551692.5_1_14:105834472-105850026:+|nuORF ENST00000551692.5_1_14:105834472-105850026:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2340393066406 2 457.732532 913.45051 0.11808 5.4051E-05 -0.015715 -7.1931E-06 0.10237 4.6857E-05 457.7324950921364 39.742 0.80874 37.337 36.925 37.734 -2.4049 70 22 5 0 0 0 0.0059038 1 7115 7115 112.59 38.17 1 19907000 45236 6628 30092 30112 44497 44497 -0.009676823789050104 TEIGSLRRY 9 Unmodified _TEIGSLRRY_ 0 0 0 REV__ENST00000588567.5_1_19:44716725-44717313:+|nuORF REV__ENST00000588567.5_1_19:44716725-44717313:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7850341796875 2 547.80128 1093.58801 NaN NaN NaN NaN NaN NaN NaN 63.604 1 60.188 59.688 60.688 -3.4158 0 0 0 0.20628 1 11884 11884 21.747 3.3736 1 + 45237 23296 30093 30113 44498 44498 0.044956462205163916 TEIHLFVHR 9 Unmodified _TEIHLFVHR_ 0 0 0 nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5 nc|ENSG00000111445|P40937-2|RFC5 nc|ENSG00000111445|P40937-2|RFC5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3228759765625 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 69.293 1 65.903 65.403 66.403 -3.3903 0 0 0 0.23508 1 13102 13102 7.2892 0 1 45238 2621 30094 30114 44499 44499 0.055439428370846144 TEIKGSVY 8 Unmodified _TEIKGSVY_ 0 0 0 ENST00000471919.1_1_6:116981518-116989864:-|nuORF;ZUFSP|p.N219Kfs*9|1|0.45|ENSG00000153975|chr6:116660749-116660750|-/T|frameshift_variant;ENSG00000153975|ENST00000368576|ZUP1 ENST00000471919.1_1_6:116981518-116989864:-|nuORF ENST00000471919.1_1_6:116981518-116989864:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 448.71051025390625 2 448.739825 895.465098 -0.068346 -3.0669E-05 0.42497 0.0001907 0.35662 0.00016003 448.739873022892 40.69 0.53014 38.15 37.925 38.455 -2.5398 30 14 3 0 0 0 0.83982 1 7261 7261 2.5775 0 1 3755700 45239 4987 30095 30115 44500 44500 0.01318389769244277 TEIKVGVAY 9 Unmodified _TEIKVGVAY_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2765808105469 2 490.276575 978.538597 0.21628 0.00010604 -0.006844 -3.3554E-06 0.20944 0.00010268 490.2765256571965 85.268 1.2727 85.268 84.803 86.076 0 117 35 5 0 0 0 0.0022896 5 16616 16571;16616;16669;16713;16757 118.07 70.32 1 134110000 45240 1168 30096 30116 44501;44502;44503;44504;44505 44502 0.04846938211710494 TEIKVGVAY 9 Unmodified _TEIKVGVAY_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.276611328125 2 490.276575 978.538597 0.020017 9.8137E-06 0.16665 8.1703E-05 0.18666 9.1517E-05 490.2766217399608 88.986 1.2708 85.193 84.734 86.005 -3.7926 125 35 5 0 0 0 5.8017E-05 6 17389 17344;17366;17389;17437;17487;17528 129.77 73.595 1 160670000 45241 1168 30096 30116 44506;44507;44508;44509;44510;44511 44508 0.04846938211710494 TEIKVGVAY 9 Unmodified _TEIKVGVAY_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2767028808594 2 490.276575 978.538597 0.48926 0.00023987 -0.25854 -0.00012676 0.23072 0.00011312 490.27641419179724 89.221 1.6526 85.177 84.721 86.374 -4.0443 137 46 5 0 0 0 5.8017E-05 6 17020 16933;16971;17020;17066;17118;17172 129.77 73.595 1 105750000 45242 1168 30096 30116 44512;44513;44514;44515;44516;44517 44514 0.04846938211710494 TEIKVGVAY 9 Unmodified _TEIKVGVAY_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.276611328125 2 490.276575 978.538597 -0.030993 -1.5195E-05 0.2381 0.00011674 0.20711 0.00010154 490.27665324732504 88.934 1.822 85.184 84.743 86.565 -3.7501 135 51 5 0 0 0 5.8017E-05 5 17056 16968;17012;17056;17104;17185 129.77 73.595 1 121060000 45243 1168 30096 30116 44518;44519;44520;44521;44522 44520 0.04846938211710494 TEINNPTQ 8 Unmodified _TEINNPTQ_ 0 0 0 CDH9|p.K467T|1|0.33|ENSG00000113100|chr5:26889948-26889948|T/G|missense_variant CDH9|p.K467T|1|0.33|ENSG00000113100|chr5:26889948-26889948|T/G|missense_variant CDH9|p.K467T|1|0.33|ENSG00000113100|chr5:26889948-26889948|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23876953125 2 458.722164 915.429775 -0.35165 -0.00016131 0.32239 0.00014789 -0.029252 -1.3419E-05 458.722362756147 19.621 0.27068 18.296 18.145 18.416 -1.3251 11 7 2 0 0 0 0.52597 1 2974 2974 26.884 0 1 1267800 45244 466 30097 30117 44523 44523 -0.03132272758580257 TEIRDVGPLS 10 Unmodified _TEIRDVGPLS_ 0 0 0 EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant;nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4;EPHA4|p.M245Cfs*89|1|0.35|ENSG00000116106|chr2:221563821-221563821|T/-|frameshift_variant EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.792236328125 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 42.788 1 40.182 39.682 40.682 -2.606 0 0 0 0.22583 1 7704 7704 13.906 0 1 45245 2906 30098 30118 44524 44524 0.032325202637593975 TEIVLENNY 9 Unmodified _TEIVLENNY_ 0 0 0 nc|ENSG00000107831|P55075-2|FGF8;nc|ENSG00000107831|P55075-3|FGF8;nc|ENSG00000107831|P55075|FGF8;ENSG00000107831|ENST00000320185|FGF8;nc|ENSG00000158815|O60258-2|FGF17;ENSG00000158815|ENST00000359441|FGF17 nc|ENSG00000107831|P55075-2|FGF8 nc|ENSG00000107831|P55075-2|FGF8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.771728515625 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 100.93 1 100.93 100.43 101.43 0 0 0 0 0.16428 1 19801 19801 28.487 6.9499 1 45246 2442 30099 30119 44525 44525 -0.013868748644881634 TEIVPLVLR 9 Unmodified _TEIVPLVLR_ 0 0 0 nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP nc|ENSG00000114650|Q12770-4|SCAP nc|ENSG00000114650|Q12770-4|SCAP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 347.2210998535156 3 347.221853 1038.64373 NaN NaN NaN NaN NaN NaN NaN 176.63 1 171.76 171.26 172.26 -4.8739 0 0 0 0.23508 1 35140 35140 1.0715 0 1 45247 2803 30100 30120 44526 44526 0.12595479408105348 TEKAGGRGP 9 Unmodified _TEKAGGRGP_ 0 0 0 REV__ENSG00000149499|ENST00000394773|EML3 REV__ENSG00000149499|ENST00000394773|EML3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.229736328125 2 436.732866 871.451179 0.40576 0.00017721 0.32434 0.00014165 0.7301 0.00031886 436.7326379495933 21.842 0.4649 20.368 20.195 20.66 -1.4742 19 12 2 0 0 0 0.66537 1 3765 3765 8.5933 0 1 1142000 + 45248 17009 30101 30121 44527 44527 0.010311570608109832 TEKCGHTPG 9 Unmodified _TEKCGHTPG_ 0 0 0 REV__ENST00000301067.11_1_12:49415144-49415345:-|nuORF REV__ENST00000301067.11_1_12:49415144-49415345:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24169921875 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 76.297 1 72.575 72.075 73.075 -3.7227 0 0 0 0.18274 1 14442 14442 0.40827 0 1 + 45249 20406 30102 30122 44528 44528 -0.059801954278327685 TEKCKPGCG 9 Unmodified _TEKCKPGCG_ 0 0 0 REV__COL28A1|p.V898Wfs*18|1|0.41|ENSG00000215018|chr7:7373215-7373215|T/-|frameshift_variant REV__COL28A1|p.V898Wfs*18|1|0.41|ENSG00000215018|chr7:7373215-7373215|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.53662109375 2 461.709688 921.404823 0.099027 4.5722E-05 0.83158 0.00038395 0.93061 0.00042967 461.71000326069316 58.838 1.2462 55.633 54.99 56.236 -3.2052 79 35 3 0 0 0 0.57596 1 10869 10869 0.12781 0 1 9554900 + 45250 13485 30103 30123 44529 44529 -0.05902367157148092 TEKDFSRY 8 Unmodified _TEKDFSRY_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 349.51080322265625 3 349.169818 1044.48762 -0.27409 -9.5703E-05 0.13539 4.7275E-05 -0.1387 -4.8428E-05 349.1698209060051 29.021 0.41942 27.025 26.829 27.248 -1.9962 19 11 2 0 0 0 8448 1 4918 4918 60.074 50 1 926550 45251 190 30104 30124 44530 44530 -0.03284010833135653 TEKDFSRY 8 Unmodified _TEKDFSRY_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 349.169818 1044.48762 0.40326 0.00014081 -0.62933 -0.00021974 -0.22607 -7.8937E-05 349.1695257128941 29.047 0.38891 27.091 26.912 27.301 -1.9561 0.010985 -0.00029566 NaN 60.074 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 847580 45252 190 30104 30124 -0.03284010833135653 TEKDFSRY 8 Unmodified _TEKDFSRY_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 349.169818 1044.48762 0.30942 0.00010804 -0.63945 -0.00022328 -0.33003 -0.00011523 349.1695716997695 28.878 0.41955 27.123 26.981 27.4 -1.7552 0.043421 -0.00030627 NaN 60.074 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 818520 45253 190 30104 30124 -0.03284010833135653 TEKDKVEIY 9 Unmodified _TEKDKVEIY_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2184753417969 3 375.532645 1123.5761 -0.34734 -0.00013044 0.25013 9.3931E-05 -0.097216 -3.6508E-05 375.53263023823257 42.923 0.24568 40.204 40.057 40.303 -2.7191 10 6 2 0 0 0 0.57221 1 8044 8044 7.4771 2.7611 1 1206600 45254 6137 30105 30125 44531 44531 0.019259846866816588 TEKDKVEIY 9 Unmodified _TEKDKVEIY_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.532645 1123.5761 -0.048982 -1.8394E-05 -0.27722 -0.0001041 -0.3262 -0.0001225 375.53253886812263 42.875 0.27152 40.224 40.058 40.329 -2.651 -0.031684 -0.00034426 NaN 10.899 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 849380 45255 6137 30105 30125 0.019259846866816588 TEKDKVEIY 9 Unmodified _TEKDKVEIY_ 0 0 0 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 ENSG00000171311|ENST00000370902|EXOSC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 375.532645 1123.5761 -0.69951 -0.00026269 0.61599 0.00023133 -0.083517 -3.1363E-05 375.53305050453844 42.852 0.27126 40.246 40.109 40.38 -2.606 -0.0097541 0.00066203 NaN 10.899 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 338850 45256 6137 30105 30125 0.019259846866816588 TEKEKKPP 8 Unmodified _TEKEKKPP_ 0 0 0 ENST00000560801.5_2_15:31320559-31354823:-|nuORF;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;TRPM1|p.Q811Tfs*12|1|0.28|ENSG00000134160|chr15:31037785-31037786|-/T|frameshift_variant;TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant ENST00000560801.5_2_15:31320559-31354823:-|nuORF ENST00000560801.5_2_15:31320559-31354823:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74188232421875 2 478.7742 955.533846 0.12183 5.833E-05 -1.3731 -0.00065739 -1.2512 -0.00059906 478.7739747431416 59.591 0.2107 56.367 56.253 56.464 -3.2237 7 5 2 0 0 0 0.73426 1 11117 11117 9.3474 0 1 404970 45257 3830 30106 30126 44532 44532 0.054300540689382615 TEKELQALY 9 Unmodified _TEKELQALY_ 0 0 0 nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7908325195312 2 547.790047 1093.56554 0.12148 6.6547E-05 0.093034 5.0963E-05 0.21452 0.00011751 547.7898105857336 87.194 0.42253 83.467 83.22 83.643 -3.727 18 11 2 0 0 0 0.16539 1 17041 17041 41.956 7.5538 1 1778200 45258 1510 30107 30127 44533 44533 0.022500020322468117 TEKELQALY 9 Unmodified _TEKELQALY_ 0 0 0 nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.790771484375 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 87.476 1 83.481 82.981 83.981 -3.9953 0 0 0 0.21844 1 16658 16658 18.146 0 1 45259 1510 30107 30127 44534 44534 0.022500020322468117 TEKENQIG 8 Unmodified _TEKENQIG_ 0 0 0 REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2458801269531 2 459.729989 917.445425 0.23517 0.00010811 0.10379 4.7717E-05 0.33896 0.00015583 459.7299280996031 31.59 0.56872 29.563 29.336 29.905 -2.0264 21 15 2 0 0 0 0.9455 1 5470 5470 16.942 0 1 745460 + 45260 22984 30108 30128 44535 44535 -0.016599862415091593 TEKENQIG 8 Unmodified _TEKENQIG_ 0 0 0 REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.232177734375 2 459.729989 917.445425 0.47918 0.00022029 -0.074278 -3.4148E-05 0.4049 0.00018615 459.72986617493484 31.744 0.49079 29.596 29.338 29.829 -2.1483 20 13 2 0 0 0 0.9455 1 5504 5504 23.148 7.3012 1 470130 + 45261 22984 30108 30128 44536 44536 -0.016599862415091593 TEKGTWRES 9 Unmodified _TEKGTWRES_ 0 0 0 SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant;nc|ENSG00000106868|Q6UWL2-3|SUSD1;ENSG00000106868|ENST00000374270|SUSD1;nc|ENSG00000106868|Q6UWL2-2|SUSD1 SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7694091796875 2 547.26727 1092.51999 0.30177 0.00016515 0.28407 0.00015546 0.58584 0.00032061 547.2674286090414 20.053 0.34549 20.053 19.859 20.204 0 22 9 3 0 0 0 0.35429 1 3298 3298 28.495 3.0952 1 2315500 45262 2408 30109 30129 44537 44537 -0.022572234301378558 TEKHLQKY 8 Unmodified _TEKHLQKY_ 0 0 0 DCPS|p.R145H|1|0.42|ENSG00000110063|chr11:126331462-126331462|G/A|missense_variant;ENSG00000110063|ENST00000263579|DCPS DCPS|p.R145H|1|0.42|ENSG00000110063|chr11:126331462-126331462|G/A|missense_variant DCPS|p.R145H|1|0.42|ENSG00000110063|chr11:126331462-126331462|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6991577148438 2 523.785099 1045.55564 NaN NaN NaN NaN NaN NaN NaN 14.033 1 14.033 13.533 14.533 0 0 0 0 0.21292 1 2064 2064 14.838 5.4551 1 45263 793 30110 30130 44538 44538 0.03468858817518594 TEKIVNQF 8 Unmodified _TEKIVNQF_ 0 0 0 REV__ENST00000513504.1_1_4:152592328-152612815:-|nuORF REV__ENST00000513504.1_1_4:152592328-152612815:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2764892578125 2 489.766374 977.518196 0.024042 1.1775E-05 0.21991 0.0001077 0.24395 0.00011948 489.7665166712795 73.751 0.55514 70.387 70.12 70.675 -3.3643 27 15 2 0 0 0 0.69887 1 14340 14340 14.582 0 1 4639600 + 45264 14137 30111 30131 44539 44539 0.028537675519032746 TEKIWYRR 8 Unmodified _TEKIWYRR_ 0 0 0 REV__ENST00000461741.1_1_7:48075147-48081223:+|nuORF REV__ENST00000461741.1_1_7:48075147-48081223:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3222045898438 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 20.62 1 19.235 18.735 19.735 -1.3847 0 0 0 0.21486 1 3206 3206 5.7604 1.0044 1 + 45265 17706 30112 30132 44540 44540 0.055439428370846144 TEKKSLLT 8 Unmodified _TEKKSLLT_ 0 0 0 REV__ENSG00000184117|ENST00000216121|NIPSNAP1 REV__ENSG00000184117|ENST00000216121|NIPSNAP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2324523925781 2 460.276575 918.538597 NaN NaN NaN NaN NaN NaN NaN 88.291 1 84.541 84.041 85.041 -3.7501 0 0 0 0.23182 1 16897 16897 0.25148 0.18749 1 + 45266 18879 30113 30133 44541 44541 0.07606938211711167 TEKKTGRS 8 Unmodified _TEKKTGRS_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|94|3|sense REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|94|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75341796875 2 453.753798 905.493044 0.42678 0.00019365 -1.8624 -0.00084508 -1.4356 -0.00065143 453.7530870201892 29.383 0.48722 27.309 27.102 27.59 -2.0743 18 13 2 0 0 0 0.74818 1 5013 5013 7.2892 0.93513 1 298320 + 45267 23768 30114 30134 44542 44542 0.03651712749331182 TEKLFNDL 8 Unmodified _TEKLFNDL_ 0 0 0 REV__CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant REV__CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25274658203125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 62.644 1 59.228 58.728 59.728 -3.4158 0 0 0 0.20896 1 11696 11696 18.135 2.2878 1 + 45268 13439 30115 30135 44543 44543 0.012100613149868877 TEKLNDPV 8 Unmodified _TEKLNDPV_ 0 0 0 REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22454833984375 2 458.242732 914.470912 -0.37439 -0.00017156 -0.022591 -1.0352E-05 -0.39698 -0.00018191 458.2426826556746 39.556 0.41838 37.007 36.754 37.172 -2.5491 18 11 2 0 0 0 0.91917 1 7339 7339 20.454 1.1966 1 575030 + 45269 15453 30116 30136 44544 44544 0.010254882809022092 TEKLTQPG 8 Unmodified _TEKLTQPG_ 0 0 0 REV__ENSG00000198793|ENST00000361445|MTOR REV__ENSG00000198793|ENST00000361445|MTOR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23614501953125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 34.838 1 32.509 32.009 33.009 -2.3285 0 0 0 0.21486 1 6405 6405 5.7604 0 1 + 45270 19450 30117 30137 44545 44545 0.01901505626483413 TEKPDGSGQY 10 Unmodified _TEKPDGSGQY_ 0 0 0 REV__ENST00000499853.2_1_3:129104111-129112228:+|nuORF REV__ENST00000499853.2_1_3:129104111-129112228:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.258056640625 2 541.24346 1080.47237 NaN NaN NaN NaN NaN NaN NaN 70.638 1 67.389 66.889 67.889 -3.2492 0 0 0 0.13367 1 13747 13747 38.176 0 1 + 45271 22424 30118 30138 44546 44546 -0.06464922420968833 TEKQRSLPAS 10 Unmodified _TEKQRSLPAS_ 0 0 0 ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant;ENSG00000162714|ENST00000682384|ZNF496;nc|ENSG00000162714|Q96IT1-2|ZNF496 ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 373.10443115234375 3 372.871772 1115.59349 0.71933 0.00026822 -1.0069 -0.00037544 -0.28757 -0.00010723 372.87132855265463 24.239 0.56075 22.686 22.46 23.021 -1.5532 35 15 3 0 0 0 0.91149 1 4240 4240 0.62683 0.063655 1 1001700 45272 5357 30119 30139 44547 44547 0.04031325012351772 TEKQRSLPAS 10 Unmodified _TEKQRSLPAS_ 0 0 0 ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant;ENSG00000162714|ENST00000682384|ZNF496;nc|ENSG00000162714|Q96IT1-2|ZNF496 ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 372.871772 1115.59349 -0.1616 -6.0257E-05 -0.071534 -2.6673E-05 -0.23314 -8.693E-05 372.8717099264134 22.769 0.62828 22.769 22.432 23.06 0 0.079211 0.00056363 NaN 0.62683 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1278800 45273 5357 30119 30139 0.04031325012351772 TEKQRSLPAS 10 Unmodified _TEKQRSLPAS_ 0 0 0 ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant;ENSG00000162714|ENST00000682384|ZNF496;nc|ENSG00000162714|Q96IT1-2|ZNF496 ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 372.871772 1115.59349 0.00034519 1.2871E-07 -0.57792 -0.00021549 -0.57757 -0.00021536 372.87151965900193 24.148 0.5915 22.614 22.328 22.919 -1.5342 -0.075282 -2.8194E-06 NaN 0.62683 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 864120 45274 5357 30119 30139 0.04031325012351772 TEKRRAGI 8 Unmodified _TEKRRAGI_ 0 0 0 ENST00000427624.2_1_19:58880485-58892377:-|nuORF ENST00000427624.2_1_19:58880485-58892377:-|nuORF ENST00000427624.2_1_19:58880485-58892377:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.23846435546875 2 465.777608 929.540663 0.21351 9.9448E-05 -0.17887 -8.3314E-05 0.034639 1.6134E-05 465.7774517976895 125.9 2.7546 121.25 119.31 122.06 -4.6495 141 76 2 0 0 0 1.0095 1 24147 24147 0.69038 0 1 3832200 45275 9745 30120 30140 44548 44548 0.07307411740168845 TEKSNCHNKNW 11 Unmodified _TEKSNCHNKNW_ 0 0 0 ENST00000554784.2_1_12:56775935-56776031:-|nuORF;nc|ENSG00000113838|Q9NVR7-2|TBCCD1;ENSG00000113838|ENST00000338733|TBCCD1 ENST00000554784.2_1_12:56775935-56776031:-|nuORF ENST00000554784.2_1_12:56775935-56776031:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.74798583984375 3 454.206937 1359.59898 0.07665 3.4815E-05 0.89027 0.00040437 0.96692 0.00043918 454.20722768893324 104.94 0.6606 100.58 100.33 100.99 -4.3686 36 18 3 0 0 0 0.96117 1 20088 20088 4.1166 0.79699 1 2238100 45276 2766 30121 30141 44549 44549 -0.06643319467525544 TEKSRWSEA 9 Unmodified _TEKSRWSEA_ 0 0 0 ENSG00000125652|ENST00000245812|ALKBH7 ENSG00000125652|ENST00000245812|ALKBH7 ENSG00000125652|ENST00000245812|ALKBH7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7825317382812 2 547.26727 1092.51999 0.68326 0.00037393 -0.094287 -5.16E-05 0.58897 0.00032233 547.2671299893702 21.559 0.35478 20.085 19.912 20.266 -1.4742 22 9 3 0 0 0 0.17396 1 3660 3660 40.725 6.3232 1 1951700 45277 3374 30122 30142 44550 44550 -0.022572234301378558 TEKSRWSEA 9 Unmodified _TEKSRWSEA_ 0 0 0 ENSG00000125652|ENST00000245812|ALKBH7 ENSG00000125652|ENST00000245812|ALKBH7 ENSG00000125652|ENST00000245812|ALKBH7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.76904296875 2 547.26727 1092.51999 -0.15725 -8.6056E-05 1.0759 0.00058879 0.91863 0.00050274 547.2677754405648 21.421 0.41785 20.036 19.793 20.211 -1.3847 33 11 4 0 0 0 0.20546 1 3371 3371 37.075 4.289 1 2060800 45278 3374 30122 30142 44551 44551 -0.022572234301378558 TEKTLPSGS 9 Unmodified _TEKTLPSGS_ 0 0 0 MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant;MYO9B|p.K1385Sfs*68|1|0.45|ENSG00000099331|chr19:17198220-17198220|A/-|frameshift_variant;nc|ENSG00000099331|Q13459-2|MYO9B;MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant;ENSG00000099331|ENST00000682292|MYO9B MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2398376464844 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 64.007 1 64.007 63.507 64.507 0 0 0 0 0.21065 1 12316 12316 20.454 5.6154 1 45279 12194 30123 30143 44552 44552 0.0033318441829806034 TEKTPQGL 8 Unmodified _TEKTPQGL_ 0 0 0 ENSG00000172315|ENST00000372114|TP53RK ENSG00000172315|ENST00000372114|TP53RK ENSG00000172315|ENST00000372114|TP53RK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2362060546875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 72.59 1 69.052 68.552 69.552 -3.5385 0 0 0 0.20896 1 13763 13763 18.135 4.2289 1 45280 6207 30124 30144 44553 44553 0.019015056264720442 TEKVDKLLE 9 Unmodified _TEKVDKLLE_ 0 0 0 REV__nc|ENSG00000268235|B4DZS4-2|TCP11X1 REV__nc|ENSG00000268235|B4DZS4-2|TCP11X1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 538.1837768554688 2 537.805697 1073.59684 0.27779 0.0001494 -0.15371 -8.2667E-05 0.12407 6.6728E-05 537.8056072644952 36.919 0.56062 36.919 36.632 37.192 0 36 15 3 0 0 0 0.87511 1 6765 6765 3.9444 0 1 3438900 + 45281 19681 30125 30145 44554 44554 0.06298575066307421 TEKVDKLLE 9 Unmodified _TEKVDKLLE_ 0 0 0 REV__nc|ENSG00000268235|B4DZS4-2|TCP11X1 REV__nc|ENSG00000268235|B4DZS4-2|TCP11X1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 537.805697 1073.59684 -0.13561 -7.2932E-05 0.12178 6.5493E-05 -0.013833 -7.4392E-06 537.805746872348 39.306 0.67411 36.757 36.466 37.14 -2.5491 -0.071929 0.00026537 NaN 3.9444 38 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2993900 + 45282 19681 30125 30145 0.06298575066307421 TEKVDKLLE 9 Unmodified _TEKVDKLLE_ 0 0 0 REV__nc|ENSG00000268235|B4DZS4-2|TCP11X1 REV__nc|ENSG00000268235|B4DZS4-2|TCP11X1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 537.805697 1073.59684 0.22556 0.00012131 -0.1595 -8.5781E-05 0.066062 3.5528E-05 537.8055470650686 39.256 0.65826 36.814 36.549 37.207 -2.4419 -0.014539 -3.7174E-05 NaN 3.9444 40 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4339200 + 45283 19681 30125 30145 0.06298575066307421 TEKVDKLLE 9 Unmodified _TEKVDKLLE_ 0 0 0 REV__nc|ENSG00000268235|B4DZS4-2|TCP11X1 REV__nc|ENSG00000268235|B4DZS4-2|TCP11X1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 537.805697 1073.59684 0.22073 0.00011871 -0.29584 -0.00015911 -0.075113 -4.0396E-05 537.8054554422412 39.23 0.59348 36.825 36.51 37.103 -2.4049 -0.0041134 -0.00018382 NaN 3.9444 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2830500 + 45284 19681 30125 30145 0.06298575066307421 TEKVGFLY 8 Unmodified _TEKVGFLY_ 0 0 0 nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3 nc|ENSG00000088280|Q8TDY4-3|ASAP3 nc|ENSG00000088280|Q8TDY4-3|ASAP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7214660644531 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 106.97 1 106.97 106.47 107.47 0 0 0 0 0.21171 1 21031 21031 15.847 1.2655 1 45285 1727 30126 30146 44555 44555 0.021952666659558417 TEKVGFLY 8 Unmodified _TEKVGFLY_ 0 0 0 nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3 nc|ENSG00000088280|Q8TDY4-3|ASAP3 nc|ENSG00000088280|Q8TDY4-3|ASAP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7225036621094 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 111.2 1 106.71 106.21 107.21 -4.4915 0 0 0 0.20462 1 21343 21343 21.747 3.6117 1 45286 1727 30126 30146 44556 44556 0.021952666659558417 TEKVVPTF 8 Unmodified _TEKVVPTF_ 0 0 0 REV__ENST00000495910.6_1_17:29490228-29576996:+|nuORF REV__ENST00000495910.6_1_17:29490228-29576996:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5317077636719 2 460.758018 919.501483 0.2074 9.5562E-05 0.10836 4.9927E-05 0.31576 0.00014549 460.75798477244456 134.37 0.80962 129.55 129.13 129.94 -4.8175 55 22 3 0 0 0 0.73426 1 25931 25931 9.3474 0 1 9540800 + 45287 22386 30127 30147 44557 44557 0.03851266665958519 TEKYFLAPP 9 Unmodified _TEKYFLAPP_ 0 0 0 REV__nc|ENSG00000163946|Q9UK61-2|TASOR REV__nc|ENSG00000163946|Q9UK61-2|TASOR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2693481445312 2 533.2844 1064.55425 -0.093542 -4.9884E-05 2.9846 0.0015916 2.891 0.0015417 533.786067780299 41.661 0.382 39.026 38.947 39.329 -2.6348 12 10 2 0 0 0 0.60698 1 7769 7769 30.225 13.112 1 730620 + 45288 17631 30128 30148 44558 44558 0.024552247287829232 TELARIVLL 9 Unmodified _TELARIVLL_ 0 0 0 ENSG00000141542|ENST00000571995|RAB40B;ENST00000576359.1_1_17:80616295-80616565:-|nuORF;ENSG00000172476|ENST00000304236|RAB40A;ENSG00000102128|ENST00000218249|RAB40AL ENSG00000141542|ENST00000571995|RAB40B ENSG00000141542|ENST00000571995|RAB40B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 514.2982177734375 2 514.329142 1026.64373 0.41636 0.00021414 -0.93594 -0.00048138 -0.51958 -0.00026724 514.3287305667742 159.1 0.57935 153.83 153.48 154.06 -5.2712 19 15 2 0 0 0 0.32967 1 30842 30842 2.8827 0 1 1164000 45289 4381 30129 30149 44559 44559 0.13147479408144136 TELARIVLL 9 Unmodified _TELARIVLL_ 0 0 0 ENSG00000141542|ENST00000571995|RAB40B;ENST00000576359.1_1_17:80616295-80616565:-|nuORF;ENSG00000172476|ENST00000304236|RAB40A;ENSG00000102128|ENST00000218249|RAB40AL ENSG00000141542|ENST00000571995|RAB40B ENSG00000141542|ENST00000571995|RAB40B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 514.329142 1026.64373 0.0097752 5.0277E-06 -0.18403 -9.4653E-05 -0.17426 -8.9626E-05 514.3290119411133 158.45 0.60704 153.66 153.3 153.91 -4.7952 -0.18189 0.00013234 NaN 2.8827 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1178400 45290 4381 30129 30149 0.13147479408144136 TELARIVLL 9 Unmodified _TELARIVLL_ 0 0 0 ENSG00000141542|ENST00000571995|RAB40B;ENST00000576359.1_1_17:80616295-80616565:-|nuORF;ENSG00000172476|ENST00000304236|RAB40A;ENSG00000102128|ENST00000218249|RAB40AL ENSG00000141542|ENST00000571995|RAB40B ENSG00000141542|ENST00000571995|RAB40B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 514.329142 1026.64373 -0.35916 -0.00018473 0.17761 9.135E-05 -0.18155 -9.3376E-05 514.3291833927118 159.11 0.64708 153.84 153.43 154.08 -5.2748 -0.00035574 0.00050435 NaN 2.8827 23 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1705900 45291 4381 30129 30149 0.13147479408144136 TELDNLTEF 9 Unmodified _TELDNLTEF_ 0 0 0 nc|ENSG00000117751|Q12972-2|PPP1R8;ENSG00000117751|ENST00000311772|PPP1R8 nc|ENSG00000117751|Q12972-2|PPP1R8 nc|ENSG00000117751|Q12972-2|PPP1R8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2777709960938 2 541.256037 1080.49752 0.31129 0.00016849 -0.023334 -1.263E-05 0.28796 0.00015586 541.2560306874882 141.97 0.83485 141.97 141.57 142.41 0 54 23 3 0 0 0 0.71527 1 28285 28285 25.399 15.325 1 9393900 45292 3002 30130 30150 44560 44560 -0.039508676184368596 TELDNLTEF 9 Unmodified _TELDNLTEF_ 0 0 0 nc|ENSG00000117751|Q12972-2|PPP1R8;ENSG00000117751|ENST00000311772|PPP1R8 nc|ENSG00000117751|Q12972-2|PPP1R8 nc|ENSG00000117751|Q12972-2|PPP1R8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2789916992188 2 541.256037 1080.49752 0.29647 0.00016046 -0.16215 -8.7766E-05 0.13431 7.2698E-05 541.2559565062028 146.79 0.93689 142.1 141.75 142.68 -4.6868 58 26 3 0 0 0 0.010349 1 29163 29163 103.75 45.069 1 12759000 45293 3002 30130 30150 44561 44561 -0.039508676184368596 TELDNLTEF 9 Unmodified _TELDNLTEF_ 0 0 0 nc|ENSG00000117751|Q12972-2|PPP1R8;ENSG00000117751|ENST00000311772|PPP1R8 nc|ENSG00000117751|Q12972-2|PPP1R8 nc|ENSG00000117751|Q12972-2|PPP1R8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2806396484375 2 541.256037 1080.49752 0.18021 9.754E-05 -0.1674 -9.0607E-05 0.012809 6.933E-06 541.255908886364 147.37 0.95261 142.22 141.78 142.73 -5.1558 57 26 3 0 0 0 0.019872 1 28533 28533 92.491 42.558 1 9182500 45294 3002 30130 30150 44562 44562 -0.039508676184368596 TELDNLTEF 9 Unmodified _TELDNLTEF_ 0 0 0 nc|ENSG00000117751|Q12972-2|PPP1R8;ENSG00000117751|ENST00000311772|PPP1R8 nc|ENSG00000117751|Q12972-2|PPP1R8 nc|ENSG00000117751|Q12972-2|PPP1R8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2822875976562 2 541.256037 1080.49752 0.40962 0.00022171 -0.29219 -0.00015815 0.11743 6.3559E-05 541.2558002983145 147.21 0.80176 142.21 141.78 142.59 -5 59 22 3 0 0 0 0.67531 1 28574 28574 7.9102 0.62092 1 10264000 45295 3002 30130 30150 44563 44563 -0.039508676184368596 TELEAWLQP 9 Unmodified _TELEAWLQP_ 0 0 0 REV__ENST00000528623.5_3_19:50183412-50183496:+|nuORF REV__ENST00000528623.5_3_19:50183412-50183496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.783447265625 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 115.19 1 115.19 114.69 115.69 0 0 0 0 0.19692 1 22668 22668 1.6919 1.2836 1 + 45296 22728 30131 30151 44564 44564 -2.2671392343909247E-05 TELEEVEYL 9 Unmodified _TELEEVEYL_ 0 0 0 REV__ENST00000559491.1_1_14:24629014-24629779:+|nuORF REV__ENST00000559491.1_1_14:24629014-24629779:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 562.2589721679688 2 562.771519 1123.52849 -0.049889 -2.8076E-05 -0.51191 -0.00028809 -0.5618 -0.00031616 562.7712418171924 44.71 0.5261 41.944 41.629 42.155 -2.7661 24 14 2 0 0 0 0.86532 1 8093 8093 2.0598 0 1 1057300 + 45297 14581 30132 30152 44565 44565 -0.028337143041881063 TELEEVEYL 9 Unmodified _TELEEVEYL_ 0 0 0 REV__ENST00000559491.1_1_14:24629014-24629779:+|nuORF REV__ENST00000559491.1_1_14:24629014-24629779:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 562.771519 1123.52849 0.48879 0.00027508 -1.0092 -0.00056795 -0.52041 -0.00029287 562.7710959301746 41.776 0.49034 41.776 41.444 41.935 0 -0.075415 -0.00054748 NaN 2.0598 15 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1407200 + 45298 14581 30132 30152 -0.028337143041881063 TELEEVEYL 9 Unmodified _TELEEVEYL_ 0 0 0 REV__ENST00000559491.1_1_14:24629014-24629779:+|nuORF REV__ENST00000559491.1_1_14:24629014-24629779:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 562.771519 1123.52849 -0.1088 -6.1229E-05 -0.2177 -0.00012251 -0.32649 -0.00018374 562.771635299587 44.585 0.45287 41.795 41.642 42.095 -2.79 -0.056824 0.00034339 NaN 2.0598 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1381700 + 45299 14581 30132 30152 -0.028337143041881063 TELEEVEYL 9 Unmodified _TELEEVEYL_ 0 0 0 REV__ENST00000559491.1_1_14:24629014-24629779:+|nuORF REV__ENST00000559491.1_1_14:24629014-24629779:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 562.771519 1123.52849 -0.062444 -3.5142E-05 -0.54803 -0.00030842 -0.61048 -0.00034356 562.7712291121942 44.639 0.53228 41.892 41.568 42.1 -2.7475 0.040107 -2.8417E-05 NaN 2.0598 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1471900 + 45300 14581 30132 30152 -0.028337143041881063 TELEKTSAT 9 Unmodified _TELEKTSAT_ 0 0 0 REV__TEFM|p.A87T|1|0.08|ENSG00000172171|chr17:30904302-30904302|C/T|missense_variant REV__TEFM|p.A87T|1|0.08|ENSG00000172171|chr17:30904302-30904302|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25341796875 2 490.250754 978.486955 NaN NaN NaN NaN NaN NaN NaN 100.57 1 100.57 100.07 101.07 0 0 0 0 0.22962 1 19732 19732 14.838 1.3304 1 + 45301 24784 30133 30153 44566 44566 -0.003148502728549829 TELERAFGY 9 Unmodified _TELERAFGY_ 0 0 0 nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7955932617188 2 543.266739 1084.51892 0.60302 0.0003276 -0.34398 -0.00018687 0.25904 0.00014073 543.2665390858932 99.639 0.73534 99.639 99.267 100 0 34 20 2 0 0 0 0.028327 1 19547 19547 83.429 41.334 1 4048100 45302 2669 30134 30154 44567 44567 -0.019954377990416106 TELERAFGY 9 Unmodified _TELERAFGY_ 0 0 0 nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7965698242188 2 543.266739 1084.51892 0.20783 0.00011291 -0.29406 -0.00015975 -0.086235 -4.6849E-05 543.2665438838396 104.02 0.62265 99.671 99.35 99.973 -4.346 25 17 2 0 0 0 0.037522 1 19933 19933 76.825 42.423 1 1538300 45303 2669 30134 30154 44568 44568 -0.019954377990416106 TELERAFGY 9 Unmodified _TELERAFGY_ 0 0 0 nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.266739 1084.51892 0.071265 3.8716E-05 0.031581 1.7157E-05 0.10285 5.5873E-05 543.2667361947636 103.99 0.44073 99.774 99.519 99.96 -4.2183 0.059939 0.00021035 NaN 83.429 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2546400 45304 2669 30134 30154 -0.019954377990416106 TELFSLSSP 9 Unmodified _TELFSLSSP_ 0 0 0 REV__ST6GAL2|p.P93Lfs*81|1|0.33|ENSG00000144057|chr2:106843702-106843702|C/-|frameshift_variant REV__ST6GAL2|p.P93Lfs*81|1|0.33|ENSG00000144057|chr2:106843702-106843702|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.73077392578125 2 490.75039 979.486227 NaN NaN NaN NaN NaN NaN NaN 133.04 1 128.4 127.9 128.9 -4.6399 0 0 0 0.19679 1 26229 26229 0.12781 0.0049496 1 + 45305 16768 30135 30155 44569 44569 -0.004336449219067617 TELGNELFY 9 Unmodified _TELGNELFY_ 0 0 0 SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant;ENSG00000126821|ENST00000247225|SGPP1 SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7814331054688 2 543.261122 1084.50769 0.2153 0.00011696 0.0082287 4.4703E-06 0.22353 0.00012143 543.2610297444536 130.67 0.99155 126.03 125.51 126.5 -4.6359 82 27 4 0 0 0 0.34411 1 25789 25789 29.082 0.59474 1 13741000 45306 3448 30136 30156 44570 44570 -0.03118259893199138 TELGSTHTA 9 Unmodified _TELGSTHTA_ 0 0 0 nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2408142089844 2 458.722164 915.429775 0.19619 8.9999E-05 0.28593 0.00013116 0.48212 0.00022116 458.7222272334418 18.417 0.38628 18.417 18.23 18.616 0 22 10 3 0 0 0 0.0057446 1 2968 2968 125.62 85.667 1 5776700 45307 1739 30137 30157 44571 44571 -0.031322727585916255 TELGSTHTA 9 Unmodified _TELGSTHTA_ 0 0 0 nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2410888671875 2 458.722164 915.429775 0.071531 3.2813E-05 0.25976 0.00011916 0.33129 0.00015197 458.7222532812319 19.689 0.37962 18.292 18.102 18.481 -1.3966 17 10 2 0 0 0 0.027812 1 3250 3250 92.822 52.865 1 3871000 45308 1739 30137 30157 44572 44572 -0.031322727585916255 TELGSTHTA 9 Unmodified _TELGSTHTA_ 0 0 0 nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS nc|ENSG00000088888|Q7Z434-4|MAVS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2295227050781 2 458.722164 915.429775 -0.95799 -0.00043945 1.3543 0.00062125 0.39632 0.0001818 458.722737363542 19.809 0.24551 18.173 18.083 18.328 -1.6351 10 6 2 0 0 0 0.74655 1 3036 3036 21.747 10.106 1 711650 45309 1739 30137 30157 44573 44573 -0.031322727585916255 TELHQRELREM 11 Unmodified _TELHQRELREM_ 0 0 0 REV__PHLDB2|p.R449H|1|0.29|ENSG00000144824|chr3:111913329-111913329|G/A|missense_variant REV__PHLDB2|p.R449H|1|0.29|ENSG00000144824|chr3:111913329-111913329|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2432861328125 3 481.245392 1440.71435 NaN NaN NaN NaN NaN NaN NaN 153 1 153 152.5 153.5 0 0 0 0 0.22632 1 30650 30650 0.026206 0 1 + 45310 24464 30138 30158 44574 44574 0.011617846634635498 TELHVISY 8 Unmodified _TELHVISY_ 0 0 0 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.253173828125 2 481.2531 960.491647 -0.21581 -0.00010386 0.58551 0.00028178 0.3697 0.00017792 481.2534324401002 92.565 0.62455 92.565 92.226 92.851 0 38 17 3 0 0 0 0.07308 5 18101 18053;18101;18129;18136;18153 77.984 28.315 1 3296900 45311 6312 30139 30159 44575;44576;44577;44578;44579 44576 0.009820786605587273 TELHVISY 8 Unmodified _TELHVISY_ 0 0 0 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2433166503906 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 83.053 1 83.053 82.553 83.553 0 0 0 0 0.21323 1 16191 16191 14.582 3.7578 1 45312 6312 30139 30159 44580 44580 0.009820786605587273 TELHVISY 8 Unmodified _TELHVISY_ 0 0 0 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2532958984375 2 481.2531 960.491647 0.081303 3.9127E-05 -1.376 -0.00066223 -1.2947 -0.0006231 481.25321062497557 96.585 0.96274 92.487 91.944 92.907 -4.0978 57 27 3 0 0 0 0.060254 3 18959 18911;18959;18974 85.357 31.781 1 3569800 45313 6312 30139 30159 44581;44582;44583 44582 0.009820786605587273 TELHVISY 8 Unmodified _TELHVISY_ 0 0 0 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2530212402344 2 481.2531 960.491647 0.15328 7.3766E-05 -0.81561 -0.00039252 -0.66233 -0.00031875 481.25313689118605 96.71 0.9654 92.475 91.951 92.916 -4.2348 45 27 2 0 0 0 0.060254 2 18479 18432;18479 85.357 33.974 1 3681000 45314 6312 30139 30159 44584;44585 44585 0.009820786605587273 TELHVISY 8 Unmodified _TELHVISY_ 0 0 0 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2529602050781 2 481.2531 960.491647 -0.10342 -4.9772E-05 -1.5229 -0.00073288 -1.6263 -0.00078265 481.2532946354363 96.335 1.0014 92.416 91.918 92.919 -3.9194 63 28 3 0 0 0 0.060254 6 18497 18453;18497;18509;18540;18551;18564 85.357 51.113 1 3603100 45315 6312 30139 30159 44586;44587;44588;44589;44590;44591 44587 0.009820786605587273 TELHVISY 8 Unmodified _TELHVISY_ 0 0 0 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2381591796875 2 481.2531 960.491647 0.59517 0.00028643 -0.17498 -8.4212E-05 0.42019 0.00020222 481.252948308135 109.18 0.70125 105 104.7 105.4 -4.1826 30 19 2 0 0 0 0.68128 1 21049 21049 16.942 0 1 1173300 45316 6312 30139 30159 44592 44592 0.009820786605587273 TELHVISY 8 Unmodified _TELHVISY_ 0 0 0 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25408935546875 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 71.232 1 67.765 67.265 68.265 -3.467 0 0 0 0.21486 1 13498 13498 9.3474 0 1 45317 6312 30139 30159 44593 44593 0.009820786605587273 TELIKHQLL 9 Unmodified _TELIKHQLL_ 0 0 0 REV__ENSG00000158863|ENST00000289921|FHIP2B REV__ENSG00000158863|ENST00000289921|FHIP2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.78466796875 2 547.832049 1093.64954 NaN NaN NaN NaN NaN NaN NaN 79.364 1 75.688 75.188 76.188 -3.676 0 0 0 0.19632 1 15120 15120 0.0033805 0 1 + 45318 17351 30140 30160 44594 44594 0.10646577919806077 TELINLHLK 9 Unmodified _TELINLHLK_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2719116210938 2 540.824224 1079.63389 0.28609 0.00015473 3.9493 0.0021359 4.2354 0.0022906 540.8272567720303 146.97 0.10315 142.28 142.23 142.33 -4.6868 4 2 2 0 0 0 0.74655 1 29150 29150 10.824 0 1 1955600 45319 1299 30141 30161 44595 44595 0.09726291402739662 TELIRPEP 8 Unmodified _TELIRPEP_ 0 0 0 REV__ADAD1|p.E528Rfs*4|1|0.31|ENSG00000164113|chr4:122421348-122421349|-/A|frameshift_variant REV__ADAD1|p.E528Rfs*4|1|0.31|ENSG00000164113|chr4:122421348-122421349|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 477.7650451660156 2 477.766374 953.518196 NaN NaN NaN NaN NaN NaN NaN 139.75 1 139.75 139.25 140.25 0 0 0 0 0.22757 1 27794 27794 0.62683 0 1 + 45320 12935 30142 30162 44596 44596 0.039577675518899014 TELISLLLE 9 Unmodified _TELISLLLE_ 0 0 0 CASKIN1|p.L618Pfs*10|1|0.31|ENSG00000167971|chr16:2181520-2181521|-/C|frameshift_variant;CASKIN1|p.Q778Rfs*27|1|0.23|ENSG00000167971|chr16:2181036-2181036|G/-|frameshift_variant;CASKIN1|p.Q778Pfs*91|1|0.45|ENSG00000167971|chr16:2181035-2181036|-/G|frameshift_variant;ENSG00000167971|ENST00000343516|CASKIN1 CASKIN1|p.L618Pfs*10|1|0.31|ENSG00000167971|chr16:2181520-2181521|-/C|frameshift_variant CASKIN1|p.L618Pfs*10|1|0.31|ENSG00000167971|chr16:2181520-2181521|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.22564697265625 3 344.205869 1029.59578 NaN NaN NaN NaN NaN NaN NaN 137.58 1 132.74 132.24 133.24 -4.84 0 0 0 0.23508 1 26509 26509 4.5289 0 1 45321 396 30143 30163 44597 44597 0.08216360697429081 TELKLRGLPV 10 Unmodified _TELKLRGLPV_ 0 0 0 nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB nc|ENSG00000186260|Q9ULH7-4|MRTFB nc|ENSG00000186260|Q9ULH7-4|MRTFB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.9072265625 3 375.904524 1124.69174 NaN NaN NaN NaN NaN NaN NaN 94.427 1 90.583 90.083 91.083 -3.844 0 0 0 2.8426 1 18116 18116 0.013265 0 1 45322 7048 30144 30164 44598 44598 0.13438553328182934 TELLAERF 8 Unmodified _TELLAERF_ 0 0 0 SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant;ENSG00000198952|ENST00000361813|SMG5 SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25286865234375 2 489.766374 977.518196 0.17325 8.4852E-05 -0.36512 -0.00017882 -0.19187 -9.397E-05 489.7664283133343 112.44 0.72343 112.44 112.01 112.73 0 35 20 2 0 0 0 0.67739 1 22147 22147 24.991 3.2443 1 2109700 45323 7531 30145 30165 44599 44599 0.028537675519032746 TELLAERF 8 Unmodified _TELLAERF_ 0 0 0 SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant;ENSG00000198952|ENST00000361813|SMG5 SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2688903808594 2 489.766374 977.518196 0.22517 0.00011028 0.30335 0.00014857 0.52852 0.00025885 489.7666087340678 116.7 0.65879 112.22 111.87 112.52 -4.486 33 18 2 0 0 0 0.47729 1 23049 23049 29.082 0.59474 1 2034200 45324 7531 30145 30165 44600 44600 0.028537675519032746 TELLAERF 8 Unmodified _TELLAERF_ 0 0 0 SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant;ENSG00000198952|ENST00000361813|SMG5 SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26776123046875 2 489.766374 977.518196 0.43624 0.00021366 -0.26515 -0.00012986 0.1711 8.3798E-05 489.7662900132418 116.83 0.66875 112.25 111.84 112.5 -4.5815 30 18 2 0 0 0 0.55554 1 22438 22438 24.991 3.454 1 1348400 45325 7531 30145 30165 44601 44601 0.028537675519032746 TELLAERF 8 Unmodified _TELLAERF_ 0 0 0 SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant;ENSG00000198952|ENST00000361813|SMG5 SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25762939453125 2 489.766374 977.518196 0.23562 0.0001154 0.093792 4.5936E-05 0.32941 0.00016134 489.76645378254216 116.48 0.70712 112.12 111.84 112.55 -4.3585 34 19 2 0 0 0 0.9383 1 22485 22485 19.257 3.4098 1 1703100 45326 7531 30145 30165 44602 44602 0.028537675519032746 TELLIRKL 8 Unmodified _TELLIRKL_ 0 0 0 ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000163041|ENST00000366815|H3-3A;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;ENSG00000273983|ENST00000614378|H3C8;ENSG00000274750|ENST00000614911|H3C6;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000277775|ENST00000618052|H3C7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000168148|ENST00000366696|H3-4 ENST00000401004.2_1:120904811-120905087:+|nuORF ENST00000401004.2_1:120904811-120905087:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 493.2237548828125 2 493.32386 984.633166 -0.11073 -5.4627E-05 0.31137 0.00015361 0.20064 9.8978E-05 493.323999861215 98.296 0.64108 94.339 93.99 94.631 -3.9564 47 18 3 0 0 0 0.8748 1 18821 18821 18.373 0 1 2277300 45327 3732 30146 30166 44603 44603 0.14023496753691234 TELLIRKL 8 Unmodified _TELLIRKL_ 0 0 0 ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000163041|ENST00000366815|H3-3A;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;ENSG00000273983|ENST00000614378|H3C8;ENSG00000274750|ENST00000614911|H3C6;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000277775|ENST00000618052|H3C7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000168148|ENST00000366696|H3-4 ENST00000401004.2_1:120904811-120905087:+|nuORF ENST00000401004.2_1:120904811-120905087:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 493.32386 984.633166 0.11096 5.4739E-05 0.41276 0.00020363 0.52372 0.00025836 493.3238682346286 98.281 0.76522 94.148 93.773 94.538 -4.1326 -0.13114 0.00014215 NaN 18.373 49 21 3 NaN NaN NaN NaN 0 NaN NaN 0 2891100 45328 3732 30146 30166 0.14023496753691234 TELLIRKL 8 Unmodified _TELLIRKL_ 0 0 0 ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000163041|ENST00000366815|H3-3A;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;ENSG00000273983|ENST00000614378|H3C8;ENSG00000274750|ENST00000614911|H3C6;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000277775|ENST00000618052|H3C7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000168148|ENST00000366696|H3-4 ENST00000401004.2_1:120904811-120905087:+|nuORF ENST00000401004.2_1:120904811-120905087:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 493.32386 984.633166 0.2131 0.00010513 0.092714 4.5738E-05 0.30582 0.00015087 493.32378583139507 98.62 0.6569 94.35 93.954 94.61 -4.2692 0.071043 -0.00017363 NaN 18.373 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3177500 45329 3732 30146 30166 0.14023496753691234 TELLRRYK 8 Unmodified _TELLRRYK_ 0 0 0 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2163391113281 3 360.217102 1077.62948 NaN NaN NaN NaN NaN NaN NaN 156.99 1 151.7 151.2 152.2 -5.2854 0 0 0 0.21486 1 30460 30460 1.6526 0 1 + 45330 18990 30147 30167 44604 44604 0.0937682697983746 TELMPPPPP 9 Unmodified _TELMPPPPP_ 0 0 0 nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT nc|ENSG00000111880|O60942-2|RNGTT nc|ENSG00000111880|O60942-2|RNGTT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2532958984375 2 489.751879 977.489204 -0.11556 -5.6598E-05 0.034791 1.7039E-05 -0.080773 -3.9559E-05 489.75178018796424 104.66 2.227 100.44 99.756 101.98 -4.2183 99 63 2 0 0 0 0.022915 10 20625 20510;20568;20625;20637;20661;20675;20700;20722;20757;20769 89.427 18.711 1 2515000 45331 2656 30148 30168 44605;44606;44607;44608;44609;44610;44611;44612;44613;44614 44607 -0.0004409306874322283 TELMPPPPP 9 Unmodified _TELMPPPPP_ 0 0 0 nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT nc|ENSG00000111880|O60942-2|RNGTT nc|ENSG00000111880|O60942-2|RNGTT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25262451171875 2 489.751879 977.489204 0.23042 0.00011285 -0.1888 -9.2466E-05 0.041615 2.0381E-05 489.75172336060007 104.98 2.2947 100.6 99.731 102.03 -4.3764 100 65 2 0 0 0 0.0076257 7 20084 19985;20033;20084;20097;20115;20140;20190 109.63 20.202 1 2633900 45332 2656 30148 30168 44615;44616;44617;44618;44619;44620;44621 44617 -0.0004409306874322283 TELMPPPPP 9 Unmodified _TELMPPPPP_ 0 0 0 nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT nc|ENSG00000111880|O60942-2|RNGTT nc|ENSG00000111880|O60942-2|RNGTT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2528381347656 2 489.751879 977.489204 0.49118 0.00024056 -0.38463 -0.00018837 0.10656 5.2186E-05 489.7516922615597 104.6 1.6656 100.55 99.802 101.47 -4.0543 85 46 2 0 0 0 0.022915 9 20161 19990;20006;20048;20100;20124;20161;20205;20249;20298 89.427 29.037 1 1901000 45333 2656 30148 30168 44622;44623;44624;44625;44626;44627;44628;44629;44630 44627 -0.0004409306874322283 TELNKFEY 8 Unmodified _TELNKFEY_ 0 0 0 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.25830078125 2 522.25584 1042.49713 -0.21316 -0.00011132 1.0062 0.00052548 0.79301 0.00041416 522.2562688118581 65.595 0.60502 62.548 62.105 62.71 -3.047 20 17 2 0 0 0 0.73426 1 12625 12625 9.3474 1.4373 1 1834700 45334 26090 30149 30169 44631 44631 -0.022422425476179342 TELNKFNL 8 Unmodified _TELNKFNL_ 0 0 0 REV__ENSG00000183346|ENST00000648843|CABCOCO1 REV__ENSG00000183346|ENST00000648843|CABCOCO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27667236328125 2 489.766374 977.518196 0.43624 0.00021366 -0.26515 -0.00012986 0.1711 8.3798E-05 489.7662900132418 116.83 0.66875 112.25 111.84 112.5 -4.5815 30 18 2 0 0 0 0.36038 2 22391 22391;22399 34.102 3.4659 1 1348400 + 45335 18830 30150 30170 44632;44633 44632 0.028537675519032746 TELQGMNEY 9 Unmodified _TELQGMNEY_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.79248046875 2 542.734414 1083.45428 0.44338 0.00024064 -1.5558 -0.00084441 -1.1125 -0.00060377 542.7337531432021 74.561 1.2942 74.561 74.116 75.41 0 103 36 4 0 0 0 0.053942 2 14479 14436;14479 69.105 58.556 1 11760000 45336 514 30151 30171 44634;44635 44635 -0.08411380667348567 TELQGMNEY 9 Unmodified _TELQGMNEY_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.769775390625 2 542.734414 1083.45428 0.23979 0.00013014 -0.51843 -0.00028137 -0.27864 -0.00015123 542.7342808898925 78.392 1.1716 74.929 74.359 75.53 -3.4633 109 32 5 0 0 0 0.080883 1 15273 15273 61.602 27.2 1 25081000 45337 514 30151 30171 44636 44636 -0.08411380667348567 TELQGMNEY 9 Unmodified _TELQGMNEY_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7697143554688 2 542.734414 1083.45428 0.07442 4.039E-05 -0.21505 -0.00011672 -0.14063 -7.6325E-05 542.7343734886396 78.637 1.1909 74.969 74.329 75.52 -3.6678 106 33 4 0 0 0 0.010502 1 14962 14962 103.42 51.79 1 21046000 45338 514 30151 30171 44637 44637 -0.08411380667348567 TELQGMNEY 9 Unmodified _TELQGMNEY_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.734414 1083.45428 -0.010222 -5.5478E-06 -0.31961 -0.00017346 -0.32983 -0.00017901 542.73442583668 78.761 0.91714 74.956 74.522 75.439 -3.8048 0.10245 0.00029776 NaN 103.42 103 25 5 NaN NaN NaN NaN 0 NaN NaN 0 19322000 45339 514 30151 30171 -0.08411380667348567 TELQIAVV 8 Unmodified _TELQIAVV_ 0 0 0 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2153015136719 2 436.758018 871.501483 0.071733 3.133E-05 -0.11259 -4.9175E-05 -0.040858 -1.7845E-05 436.7579200288605 138.94 0.95491 134.09 133.54 134.49 -4.8492 44 26 2 0 0 0 0.64512 1 26707 26707 19.257 2.3147 1 5811900 45340 6363 30152 30172 44638 44638 0.0605926666595451 TELQPALSA 9 Unmodified _TELQPALSA_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000551842.5_1_12:57881873-57883359:+|nuORF;ENST00000553162.5_1_12:57881873-57883795:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2503662109375 2 465.250557 928.486562 -0.064934 -3.021E-05 -0.51619 -0.00024016 -0.58113 -0.00027037 465.2504629351444 82.439 0.87493 78.831 78.464 79.339 -3.6079 29 24 2 0 0 0 0.58077 1 16146 16146 14.405 1.3629 1 656750 45341 5775 30153 30173 44639 44639 0.019457747979458873 TELQVGLRY 9 Unmodified _TELQVGLRY_ 0 0 0 ENST00000547062.5_1_12:57882954-57883182:+|nuORF;ENST00000550449.5_1_12:57881846-57883182:+|nuORF ENST00000547062.5_1_12:57882954-57883182:+|nuORF ENST00000547062.5_1_12:57882954-57883182:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 75.853 1 72.438 71.938 72.938 -3.4151 0 0 0 0.23508 1 14798 14798 2.7352 0 1 45342 11138 30154 30174 44640 44640 0.0461712798901317 TELQWPWGY 9 Unmodified _TELQWPWGY_ 0 0 0 ENST00000308696.10_1_2:232003505-232010972:+|nuORF ENST00000308696.10_1_2:232003505-232010972:+|nuORF ENST00000308696.10_1_2:232003505-232010972:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2763061523438 2 590.277106 1178.53966 NaN NaN NaN NaN NaN NaN NaN 48.034 1 48.034 47.534 48.534 0 0 0 0 0.23508 1 9063 9063 8.5933 1.304 1 45343 8628 30155 30175 44641 44641 -0.042468474193810835 TELRSLSSS 9 Unmodified _TELRSLSSS_ 0 0 0 ENST00000572179.5_1_17:3620076-3623623:-|nuORF ENST00000572179.5_1_17:3620076-3623623:-|nuORF ENST00000572179.5_1_17:3620076-3623623:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2546691894531 2 490.256371 978.498189 NaN NaN NaN NaN NaN NaN NaN 121.94 1 121.94 121.44 122.44 0 0 0 0 0.18705 1 24039 24039 25.399 0.72543 1 45344 11430 30156 30176 44642 44642 0.008079718212911757 TELRSVKEEL 10 Unmodified _TELRSVKEEL_ 0 0 0 REV__ENSG00000143375|ENST00000271636|CGN REV__ENSG00000143375|ENST00000271636|CGN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2879638671875 2 602.33261 1202.65067 NaN NaN NaN NaN NaN NaN NaN 154.55 1 154.55 154.05 155.05 0 0 0 0 2.8426 1 30976 30976 1.9064 0 1 + 45345 16722 30157 30177 44643 44643 0.05744747498056313 TELSAAEQL 9 Unmodified _TELSAAEQL_ 0 0 0 REV__nc|ENSG00000081177|Q9NVH0-2|EXD2 REV__nc|ENSG00000081177|Q9NVH0-2|EXD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.2058410644531 3 321.166073 960.476391 NaN NaN NaN NaN NaN NaN NaN 41.173 1 38.683 38.183 39.183 -2.4896 0 0 0 0.19669 1 7385 7385 0.40827 0.2854 1 + 45346 14427 30158 30178 44644 44644 -0.0054283292729451205 TELSAVTGH 9 Unmodified _TELSAVTGH_ 0 0 0 REV__ENST00000308973.8_1_4:38777424-38777762:-|nuORF REV__ENST00000308973.8_1_4:38777424-38777762:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2339172363281 2 457.732532 913.45051 -0.043188 -1.9768E-05 0.10181 4.6604E-05 0.058627 2.6835E-05 457.732552595794 39.811 0.80859 37.271 36.831 37.64 -2.5398 68 22 4 0 0 0 0.6329 1 7053 7053 10.824 0 1 25860000 + 45347 20465 30159 30179 44645 44645 -0.009676823789050104 TELSGNQVFA 10 Unmodified _TELSGNQVFA_ 0 0 0 ENSG00000117643|ENST00000374332|MAN1C1;ENST00000473891.1_1_1:26013020-26085338:+|nuORF ENSG00000117643|ENST00000374332|MAN1C1 ENSG00000117643|ENST00000374332|MAN1C1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2633056640625 2 533.264196 1064.51384 -0.1413 -7.5352E-05 0.51763 0.00027603 0.37633 0.00020068 533.2643514791258 34.867 0.31568 32.473 32.283 32.599 -2.3938 14 8 2 0 0 0 0.6817 1 6393 6393 13.042 2.2185 1 902270 45348 2997 30160 30180 44646 44646 -0.01583741661647764 TELTEEKAY 9 Unmodified _TELTEEKAY_ 0 0 0 ENST00000447266.6_1_6:76376439-76376544:+|nuORF ENST00000447266.6_1_6:76376439-76376544:+|nuORF ENST00000447266.6_1_6:76376439-76376544:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7711791992188 2 542.263862 1082.51317 0.011584 6.2813E-06 0.0047106 2.5544E-06 0.016294 8.8357E-06 542.2637933307287 64.341 1.1756 64.341 63.749 64.924 0 110 33 4 0 0 0 0.40602 1 12451 12451 25.399 7.253 1 34766000 45349 9946 30161 30181 44647 44647 -0.02478581101377131 TELTVLKSA 9 Unmodified _TELTVLKSA_ 0 0 0 REV__nc|ENSG00000114541|Q9Y2L6-2|FRMD4B REV__nc|ENSG00000114541|Q9Y2L6-2|FRMD4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78302001953125 2 481.281857 960.549162 -0.19101 -9.1932E-05 -0.02042 -9.8278E-06 -0.21144 -0.00010176 481.2817725501397 79.831 0.94025 76.155 75.69 76.63 -3.676 59 26 3 0 0 0 0.31714 1 15169 15169 30.637 0 1 5761200 + 45350 15379 30162 30182 44648 44648 0.06730920866129964 TELVKQIKV 9 Unmodified _TELVKQIKV_ 0 0 0 sp|F5HCM1|VIE1_HCMVMImmediateearlyproteinIE1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL123PE=3SV=1 sp|F5HCM1|VIE1_HCMVMImmediateearlyproteinIE1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL123PE=3SV=1 sp|F5HCM1|VIE1_HCMVMImmediateearlyproteinIE1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL123PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 353.2199401855469 3 353.225375 1056.6543 0.15453 5.4584E-05 -0.005582 -1.9717E-06 0.14895 5.2612E-05 353.2253219288315 26.528 0.28257 24.893 24.754 25.037 -1.6347 11 7 2 0 0 0 0.43879 1 4427 4427 1.2148 0 1 437360 45351 25727 30163 30183 44649 44649 0.12823462062578983 TELVPQMC 8 Unmodified _TELVPQMC_ 0 0 0 REV__ENSG00000080298|ENST00000617270|RFX3 REV__ENSG00000080298|ENST00000617270|RFX3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2379455566406 2 460.714439 919.414325 0.21013 9.681E-05 -3.4799 -0.0016033 -3.2698 -0.0015064 460.7124119655962 122.79 0.21217 122.79 122.61 122.82 0 6 5 2 0 0 0 0.89687 1 24200 24200 3.2813 0 1 839720 + 45352 14407 30164 30184 44650 44650 -0.04860598871619004 TELVVRKLN 9 Unmodified _TELVVRKLN_ 0 0 0 REV__tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1 REV__tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5606384277344 3 357.888874 1070.64479 -0.25789 -9.2297E-05 0.10841 3.88E-05 -0.14948 -5.3496E-05 357.8889135773676 81.519 2.2557 77.962 77.274 79.53 -3.557 88 64 2 0 0 0 0.6226 1 16128 16128 4.897 4.8532 1 36559000 + 45353 25226 30165 30185 44651 44651 0.1122969377706795 TELYEYLL 8 Unmodified _TELYEYLL_ 0 0 0 REV__ANO5|p.F670L|1|0.3|ENSG00000171714|chr11:22270423-22270423|C/A|missense_variant REV__ANO5|p.F670L|1|0.3|ENSG00000171714|chr11:22270423-22270423|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2659912109375 2 522.268416 1042.52228 NaN NaN NaN NaN NaN NaN NaN 20.862 1 19.388 18.888 19.888 -1.4742 0 0 0 0.21486 1 3504 3504 5.2307 0.47466 1 + 45354 13069 30166 30186 44652 44652 0.002718122549367763 TELYEYLL 8 Unmodified _TELYEYLL_ 0 0 0 REV__ANO5|p.F670L|1|0.3|ENSG00000171714|chr11:22270423-22270423|C/A|missense_variant REV__ANO5|p.F670L|1|0.3|ENSG00000171714|chr11:22270423-22270423|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2604370117188 2 522.268416 1042.52228 NaN NaN NaN NaN NaN NaN NaN 21.04 1 19.319 18.819 19.819 -1.7211 0 0 0 0.21486 1 3268 3268 5.2307 0.47466 1 + 45355 13069 30166 30186 44653 44653 0.002718122549367763 TELYEYLL 8 Unmodified _TELYEYLL_ 0 0 0 REV__ANO5|p.F670L|1|0.3|ENSG00000171714|chr11:22270423-22270423|C/A|missense_variant REV__ANO5|p.F670L|1|0.3|ENSG00000171714|chr11:22270423-22270423|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2670288085938 2 522.268416 1042.52228 NaN NaN NaN NaN NaN NaN NaN 21.083 1 19.362 18.862 19.862 -1.7211 0 0 0 0.21486 1 3277 3277 5.2307 0.47466 1 + 45356 13069 30166 30186 44654 44654 0.002718122549367763 TEMINDDSY 9 Unmodified _TEMINDDSY_ 0 0 0 REV__ENSG00000154553|ENST00000284767|PDLIM3 REV__ENSG00000154553|ENST00000284767|PDLIM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.787353515625 2 544.216054 1086.41756 0.10454 5.6891E-05 0.9984 0.00054335 1.1029 0.00060024 544.2166160763472 56.527 1.1653 53.351 52.693 53.858 -3.1761 49 32 2 0 0 0 0.67531 1 10492 10492 7.9102 0.62092 1 4532000 + 45357 17187 30167 30187 44655 44655 -0.12219677283906094 TEMLVHNA 8 Unmodified _TEMLVHNA_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2254638671875 2 457.723652 913.432752 0.43988 0.00020134 0.33476 0.00015323 0.77464 0.00035457 457.7239182290234 40.741 0.34903 40.741 40.64 40.989 0 12 9 2 0 0 0 0.44108 2 7584 7584;7591 30.637 10.183 1 556150 45358 1167 30168 30188 44656;44657 44656 -0.027427209054053492 TEMLVHNA 8 Unmodified _TEMLVHNA_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22528076171875 2 457.723652 913.432752 -0.099405 -4.55E-05 1.216 0.00055661 1.1166 0.00051111 457.72428805851496 43.249 0.36526 40.483 40.32 40.685 -2.7661 13 9 2 0 0 0 0.14223 1 7808 7808 54.774 12.679 1 1144600 45359 1167 30168 30188 44658 44658 -0.027427209054053492 TENEAIFEQ 9 Unmodified _TENEAIFEQ_ 0 0 0 REV__ENSG00000110925|ENST00000228515|CSRNP2 REV__ENSG00000110925|ENST00000228515|CSRNP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2593383789062 2 540.745836 1079.47712 0.56511 0.00030558 2.4629 0.0013318 3.028 0.0016374 540.7473576268162 44.131 0.61173 44.131 43.883 44.495 0 21 17 2 0 0 0 0.19311 1 8313 8313 37.974 0 1 1008400 + 45360 15224 30169 30189 44659 44659 -0.05944038278221342 TENEKIYYNRL 11 Unmodified _TENEKIYYNRL_ 0 0 0 REV__TLR6|p.N423Tfs*8|1|0.09|ENSG00000174130|chr4:38828206-38828206|T/-|frameshift_variant REV__TLR6|p.N423Tfs*8|1|0.09|ENSG00000174130|chr4:38828206-38828206|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2413330078125 3 481.580658 1441.72014 0.0012681 6.1068E-07 -0.0080795 -3.8909E-06 -0.0068114 -3.2802E-06 481.5805668003522 98.003 0.51283 94.079 93.851 94.364 -3.9238 22 14 2 0 0 0 0.96197 1 18773 18773 1.2148 0.84816 1 1218700 + 45361 18394 30170 30190 44660 44660 0.01695206446811426 TENEKLFAL 9 Unmodified _TENEKLFAL_ 0 0 0 UROC1|p.Y191N|1|0.1|ENSG00000159650|chr3:126507773-126507773|A/T|missense_variant UROC1|p.Y191N|1|0.1|ENSG00000159650|chr3:126507773-126507773|A/T|missense_variant UROC1|p.Y191N|1|0.1|ENSG00000159650|chr3:126507773-126507773|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2870483398438 2 532.784764 1063.55498 0.20325 0.00010829 0.39191 0.00020881 0.59517 0.0003171 532.7846462276576 38.684 0.70395 38.684 38.32 39.024 0 41 19 4 0 0 0 0.62102 1 7214 7214 11.64 0 1 2132700 45362 26557 30171 30191 44661 44661 0.025740193778119647 TENEKLFAL 9 Unmodified _TENEKLFAL_ 0 0 0 UROC1|p.Y191N|1|0.1|ENSG00000159650|chr3:126507773-126507773|A/T|missense_variant UROC1|p.Y191N|1|0.1|ENSG00000159650|chr3:126507773-126507773|A/T|missense_variant UROC1|p.Y191N|1|0.1|ENSG00000159650|chr3:126507773-126507773|A/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.26953125 2 532.784764 1063.55498 -0.13096 -6.9771E-05 0.63691 0.00033934 0.50595 0.00026956 532.7849701266742 41.188 0.48838 38.554 38.257 38.745 -2.6348 20 13 2 0 0 0 0.48644 1 7717 7717 20.454 5.6154 1 1447000 45363 26557 30171 30191 44662 44662 0.025740193778119647 TENGSFTQPL 10 Unmodified _TENGSFTQPL_ 0 0 0 CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;CSMD3|p.G3063Rfs*5|1|0.06|ENSG00000164796|chr8:112287208-112287209|-/G|frameshift_variant;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;CSMD3|p.A3641Cfs*13|1|0.36|ENSG00000164796|chr8:112228799-112228800|-/A|frameshift_variant;nc|ENSG00000164796|Q7Z407-2|CSMD3;CSMD3|p.F3640Lfs*61|7|0.35|ENSG00000164796|chr8:112228800-112228800|A/-|frameshift_variant;ENSG00000164796|ENST00000297405|CSMD3;CSMD3|p.L2190Yfs*46|1|0.29|ENSG00000164796|chr8:112341560-112341560|A/-|frameshift_variant;nc|ENSG00000121904|Q7Z408|CSMD2;ENSG00000121904|ENST00000373381|CSMD2 CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant;nc|ENSG00000121904|Q7Z408|CSMD2 CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7846069335938 2 547.261653 1092.50875 -0.13481 -7.3777E-05 0.48535 0.00026562 0.35054 0.00019184 547.2619175041351 24.847 0.8925 22.994 22.435 23.328 -1.8534 54 25 4 0 0 0 0.664 1 3957 3957 14.838 0 1 6368000 45364 729;3197 30172 30192 44663 44663 -0.03380045524272646 TENLLLEE 8 Unmodified _TENLLLEE_ 0 0 0 REV__KIFAP3|p.C203Vfs*22|2|0.18|ENSG00000075945|chr1:170035464-170035464|A/-|frameshift_variant REV__KIFAP3|p.C203Vfs*22|2|0.18|ENSG00000075945|chr1:170035464-170035464|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2492980957031 2 480.747847 959.481142 0.18554 8.9199E-05 -0.65316 -0.00031401 -0.46762 -0.00022481 480.74745718828655 75.841 1.9103 75.841 75.138 77.048 0 138 54 4 0 0 0 0.49114 1 14861 14861 28.487 2.1456 1 138950000 + 45365 14341 30173 30193 44664 44664 -0.00021948784524283838 TENLQCNIV 9 Unmodified _TENLQCNIV_ 0 0 0 ENST00000338222.6_1_X:56592946-56593084:+|nuORF ENST00000338222.6_1_X:56592946-56593084:+|nuORF ENST00000338222.6_1_X:56592946-56593084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.21697998046875 3 345.170941 1032.491 NaN NaN NaN NaN NaN NaN NaN 89.557 1 89.557 89.057 90.057 0 0 0 0 0.23508 1 17491 17491 2.7352 0 1 45366 8829 30174 30194 44665 44665 -0.023950840508177862 TENLQCNIV 9 Unmodified _TENLQCNIV_ 0 0 0 ENST00000338222.6_1_X:56592946-56593084:+|nuORF ENST00000338222.6_1_X:56592946-56593084:+|nuORF ENST00000338222.6_1_X:56592946-56593084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.2010498046875 3 345.170941 1032.491 NaN NaN NaN NaN NaN NaN NaN 79.209 1 75.699 75.199 76.199 -3.5102 0 0 0 0.23508 1 15471 15471 2.7352 0 1 45367 8829 30174 30194 44666 44666 -0.023950840508177862 TENMMHSL 8 Unmodified _TENMMHSL_ 0 0 0 ENST00000584052.5_1_18:21043977-21044085:+|nuORF ENST00000584052.5_1_18:21043977-21044085:+|nuORF ENST00000584052.5_1_18:21043977-21044085:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2414855957031 2 481.707145 961.399737 0.21949 0.00010573 -0.26237 -0.00012639 -0.042883 -2.0657E-05 481.7069924074264 98.176 0.58798 93.907 93.638 94.226 -4.2692 24 16 2 0 0 0 0.93477 1 18763 18763 7.9102 0.62092 1 1844700 45368 11520 30175 30195 44667 44667 -0.08250671019754918 TENMYSTI 8 Unmodified _TENMYSTI_ 0 0 0 REV__GPR160|p.I239Yfs*22|5|0.32|ENSG00000173890|chr3:170084681-170084681|A/-|frameshift_variant REV__GPR160|p.I239Yfs*22|5|0.32|ENSG00000173890|chr3:170084681-170084681|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.14031982421875 3 320.144392 957.411348 NaN NaN NaN NaN NaN NaN NaN 95.947 1 91.897 91.397 92.397 -4.0496 0 0 0 0.21486 1 18810 18810 6.7232 0 1 + 45369 18381 30176 30196 44668 44668 -0.06906150724773852 TENPAMTR 8 Unmodified _TENPAMTR_ 0 0 0 ENSG00000126947|ENST00000372829|ARMCX1 ENSG00000126947|ENST00000372829|ARMCX1 ENSG00000126947|ENST00000372829|ARMCX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.24285888671875 2 460.218734 918.422915 NaN NaN NaN NaN NaN NaN NaN 108.58 1 104.44 103.94 104.94 -4.135 0 0 0 0.21486 1 20892 20892 11.64 1.5664 1 45370 3456 30177 30197 44669 44669 -0.03955908910791095 TEPAARMW 8 Unmodified _TEPAARMW_ 0 0 0 ENST00000546155.5_1_19:41116125-41119449:+|nuORF;ENST00000204005.13_1_19:41114149-41118026:+|nuORF ENST00000546155.5_1_19:41116125-41119449:+|nuORF ENST00000546155.5_1_19:41116125-41119449:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2314147949219 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 4.4564 1 3.4475 2.9475 3.9475 -1.0089 0 0 0 0.21486 1 77 77 0.79363 0 1 45371 8090 30178 30198 44670 44670 -0.03307014668507691 TEPAEREP 8 Unmodified _TEPAEREP_ 0 0 0 nc|ENSG00000181031|Q9UNE2-2|RPH3AL;ENSG00000181031|ENST00000331302|RPH3AL nc|ENSG00000181031|Q9UNE2-2|RPH3AL nc|ENSG00000181031|Q9UNE2-2|RPH3AL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2485656738281 2 464.722164 927.429775 0.1993 9.2618E-05 -1.4077 -0.00065419 -1.2084 -0.00056157 464.72170265152073 61.724 0.96791 58.484 58.069 59.037 -3.2395 47 27 3 0 0 0 0.40222 1 11581 11581 32.305 0 1 2104000 45372 6708 30179 30199 44671 44671 -0.036842727585622015 TEPAQRWR 8 Unmodified _TEPAQRWR_ 0 0 0 REV__ENST00000472057.1_1_22:29727525-29736761:-|nuORF REV__ENST00000472057.1_1_22:29727525-29736761:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2733764648438 2 522.27269 1042.53083 -0.35647 -0.00018617 -0.91955 -0.00048026 -1.276 -0.00066643 522.2721591784377 71.902 0.56467 68.591 68.283 68.848 -3.3107 26 15 2 0 0 0 8448 1 13964 13964 1.7423 1.334 1 1819500 + 45373 22048 30180 30200 44672 44672 0.01126223734809173 TEPDENFYY 9 Unmodified _TEPDENFYY_ 0 0 0 REV__ENSG00000172023|ENST00000305089|REG1B REV__ENSG00000172023|ENST00000305089|REG1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 393.29071044921875 3 393.160988 1176.46113 0.3358 0.00013202 0.4939 0.00019418 0.82971 0.00032621 393.1612237020793 29.837 0.48811 27.944 27.719 28.207 -1.8928 23 13 2 0 0 0 0.87918 1 5046 5046 1.0715 0.67075 1 666930 + 45374 18266 30181 30201 44673 44673 -0.1200374451514108 TEPDENFYY 9 Unmodified _TEPDENFYY_ 0 0 0 REV__ENSG00000172023|ENST00000305089|REG1B REV__ENSG00000172023|ENST00000305089|REG1B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 393.160988 1176.46113 0.32506 0.0001278 0.48516 0.00019074 0.81022 0.00031855 393.4954604881701 29.977 0.38341 27.86 27.735 28.119 -2.1167 -0.04194 -5.1564E-06 NaN 1.0715 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 495770 + 45375 18266 30181 30201 -0.1200374451514108 TEPFFYKY 8 Unmodified _TEPFFYKY_ 0 0 0 REV__tr|U7STD1|U7STD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01368PE=4SV=1 REV__tr|U7STD1|U7STD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01368PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7805786132812 2 547.7633 1093.51205 NaN NaN NaN NaN NaN NaN NaN 26.609 1 24.687 24.187 25.187 -1.9222 0 0 0 0.21486 1 4413 4413 5.7604 0 1 + 45376 25101 30182 30202 44674 44674 -0.030967506796287125 TEPGVHKKGI 10 Unmodified _TEPGVHKKGI_ 0 0 0 REV__ENSG00000181523|ENST00000326317|SGSH;REV__ENST00000575282.5_1_17:78187814-78194112:-|nuORF REV__ENSG00000181523|ENST00000326317|SGSH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2868041992188 2 533.306198 1064.59784 NaN NaN NaN NaN NaN NaN NaN 64.409 1 64.409 63.909 64.909 0 0 0 0 0.22588 1 12400 12400 7.2892 0 1 + 45377 18733;23201 30183 30203 44675 44675 0.06812834225888764 TEPHVSPY 8 Unmodified _TEPHVSPY_ 0 0 0 REV__nc|ENSG00000151136|A6QL63-5|ABTB3 REV__nc|ENSG00000151136|A6QL63-5|ABTB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24176025390625 2 465.2218 928.429047 NaN NaN NaN NaN NaN NaN NaN 58.485 1 55.234 54.734 55.734 -3.2517 0 0 0 0.2343 1 10869 10869 0.25148 0.17821 1 + 45378 24097 30184 30204 44676 44676 -0.0380306740761398 TEPIECEH 8 Unmodified _TEPIECEH_ 0 0 0 REV__ENSG00000205856|ENST00000382097|C22orf42 REV__ENSG00000205856|ENST00000382097|C22orf42 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7362060546875 2 479.20275 956.390947 -0.3391 -0.0001625 -1.3614 -0.00065237 -1.7005 -0.00081487 479.20383995855667 58.279 1.2136 58.279 57.894 59.108 0 97 34 4 0 0 0 0.74718 1 11161 11161 24.674 13.034 1 7788700 + 45379 19603 30185 30205 44677 44677 -0.08899321384581071 TEPKGLFQY 9 Unmodified _TEPKGLFQY_ 0 0 0 ENST00000369014.9_1_1:150594640-150594709:-|nuORF ENST00000369014.9_1_1:150594640-150594709:-|nuORF ENST00000369014.9_1_1:150594640-150594709:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2772216796875 2 541.779482 1081.54441 0.2537 0.00013745 -0.72449 -0.00039251 -0.47079 -0.00025507 541.7790299598839 97.721 1.3188 93.623 92.873 94.192 -4.0978 65 37 2 0 0 0 0.72864 1 19258 19258 16.942 6.1184 1 3077400 45380 9107 30186 30206 44678 44678 0.0069003672338112665 TEPLSSGSE 9 Unmodified _TEPLSSGSE_ 0 0 0 REV__ENSG00000163820|ENST00000296137|FYCO1 REV__ENSG00000163820|ENST00000296137|FYCO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7533264160156 2 453.70618 905.397806 0.2978 0.00013511 -0.038185 -1.7325E-05 0.25962 0.00011779 453.7059813369014 29.56 0.69839 27.667 27.402 28.101 -1.8928 24 19 2 0 0 0 0.8319 1 4992 4992 12.532 2.3482 1 545090 + 45381 17619 30187 30207 44679 44679 -0.058676852323628736 TEPLSSGSE 9 Unmodified _TEPLSSGSE_ 0 0 0 REV__ENSG00000163820|ENST00000296137|FYCO1 REV__ENSG00000163820|ENST00000296137|FYCO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 453.70618 905.397806 0.30066 0.00013641 0.0029043 1.3177E-06 0.30356 0.00013773 453.70604766489987 27.814 0.75824 27.814 27.528 28.286 0 0.1363 0.00015414 NaN 12.532 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 761250 + 45382 17619 30187 30207 -0.058676852323628736 TEPLSSGSE 9 Unmodified _TEPLSSGSE_ 0 0 0 REV__ENSG00000163820|ENST00000296137|FYCO1 REV__ENSG00000163820|ENST00000296137|FYCO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.70618 905.397806 0.48482 0.00021996 -0.46998 -0.00021323 0.014842 6.7338E-06 453.705938701734 29.508 1.0137 27.552 27.301 28.314 -1.9561 -0.12553 -0.00027496 NaN 12.532 39 28 2 NaN NaN NaN NaN 0 NaN NaN 0 458240 + 45383 17619 30187 30207 -0.058676852323628736 TEPLVKEY 8 Unmodified _TEPLVKEY_ 0 0 0 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2632751464844 2 489.760758 977.506963 0.17318 8.4816E-05 0.26347 0.00012904 0.43665 0.00021385 489.7605590391963 62.112 0.70257 59.151 58.725 59.427 -2.9614 30 19 2 0 0 0 0.31324 1 11965 11965 36.127 14.38 1 2135800 45384 3151 30188 30208 44680 44680 0.01730945457757116 TEPLVKEY 8 Unmodified _TEPLVKEY_ 0 0 0 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2629699707031 2 489.760758 977.506963 0.24624 0.0001206 0.62915 0.00030813 0.87539 0.00042873 489.7608411250966 62.5 0.62773 59.131 58.816 59.443 -3.3694 28 17 2 0 0 0 0.31324 2 11681 11646;11681 36.127 3.5669 1 1750300 45385 3151 30188 30208 44681;44682 44682 0.01730945457757116 TEPLVKEY 8 Unmodified _TEPLVKEY_ 0 0 0 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2540283203125 2 489.760758 977.506963 -0.027329 -1.3385E-05 0.77266 0.00037842 0.74534 0.00036504 489.76080246851734 62.363 0.69323 59.123 58.69 59.383 -3.2395 40 19 3 0 0 0 0.47729 1 11681 11681 29.082 8.628 1 1994200 45386 3151 30188 30208 44683 44683 0.01730945457757116 TEPNISEVPP 10 Unmodified _TEPNISEVPP_ 0 0 0 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2581787109375 2 541.771854 1081.52915 0.26228 0.0001421 -0.43074 -0.00023337 -0.16847 -9.127E-05 541.7717173896782 73.847 0.52103 70.171 69.79 70.311 -3.6764 19 14 2 0 0 0 0.78938 1 13955 13955 21.537 9.8967 1 847770 + 45387 18324 30189 30209 44684 44684 -0.008348748644721127 TEPNSLRL 8 Unmodified _TEPNSLRL_ 0 0 0 ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25616455078125 2 465.256174 928.497795 -0.033748 -1.5701E-05 -0.27419 -0.00012757 -0.30794 -0.00014327 465.25601911782445 47.634 0.63005 44.691 44.41 45.04 -2.9421 30 17 2 0 0 0 0.52597 1 8729 8729 26.884 0 1 9390000 45388 1653 30190 30210 44685 44685 0.03068596892092046 TEPPPPPPP 9 Unmodified _TEPPPPPPP_ 0 0 0 QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;QSER1|p.I1584*|1|0.24|ENSG00000060749|chr11:32969069-32969069|A/-|frameshift_variant;ENSG00000060749|ENST00000650167|QSER1;QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant;QSER1|p.A60Lfs*35|1|0.11|ENSG00000060749|chr11:32931813-32931814|-/TC|frameshift_variant;QSER1|p.S379Lfs*7|1|0.35|ENSG00000060749|chr11:32932776-32932776|T/-|frameshift_variant;COL22A1|p.I680Nfs*21|1|0.2|ENSG00000169436|chr8:138751504-138751505|-/T|frameshift_variant;COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1 QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1645202636719 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 71.333 1 67.866 67.366 68.366 -3.467 0 0 0 0.19665 1 13518 13518 0.40827 0 1 45389 1313;624 30191 30211 44686 44686 0.00354693631857117 TEPQIRTI 8 Unmodified _TEPQIRTI_ 0 0 0 REV__PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant REV__PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.725341796875 2 479.271824 956.529095 -0.24203 -0.000116 0.61622 0.00029534 0.37419 0.00017934 479.2721326696525 56.624 0.52084 56.624 56.294 56.814 0 19 14 2 0 0 0 0.91917 1 10780 10780 20.454 0 1 736250 + 45390 19261 30192 30212 44687 44687 0.04909169926202139 TEPQPGPELP 10 Unmodified _TEPQPGPELP_ 0 0 0 ENSG00000139970|ENST00000267484|RTN1;ENST00000432103.6_1_14:60063465-60194426:-|nuORF;nc|ENSG00000139970|Q16799-2|RTN1 ENSG00000139970|ENST00000267484|RTN1 ENSG00000139970|ENST00000267484|RTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.268310546875 2 532.766571 1063.51859 0.64735 0.00034489 -0.50925 -0.00027131 0.1381 7.3577E-05 532.7661420178142 73.084 0.60658 69.457 68.985 69.591 -3.6275 27 16 2 0 0 0 0.5575 1 13790 13790 21.537 2.28 1 2539100 45391 4272 30193 30213 44688 44688 -0.010628575189002731 TEPQPGPELP 10 Unmodified _TEPQPGPELP_ 0 0 0 ENSG00000139970|ENST00000267484|RTN1;ENST00000432103.6_1_14:60063465-60194426:-|nuORF;nc|ENSG00000139970|Q16799-2|RTN1 ENSG00000139970|ENST00000267484|RTN1 ENSG00000139970|ENST00000267484|RTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2681884765625 2 532.766571 1063.51859 0.42046 0.000224 -0.3069 -0.00016351 0.11355 6.0497E-05 532.7663625267593 72.96 0.48605 69.422 69.124 69.61 -3.5385 26 13 3 0 0 0 0.5575 1 13841 13841 21.537 2.098 1 3032500 45392 4272 30193 30213 44689 44689 -0.010628575189002731 TEPVDRKL 8 Unmodified _TEPVDRKL_ 0 0 0 ENSG00000125878|ENST00000246080|TCF15 ENSG00000125878|ENST00000246080|TCF15 ENSG00000125878|ENST00000246080|TCF15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7237243652344 2 479.271824 956.529095 0.072305 3.4654E-05 0.63759 0.00030558 0.70989 0.00034023 479.27201374610564 56.343 0.66647 53.154 52.811 53.478 -3.1895 35 18 3 0 0 0 0.93477 1 10466 10466 7.9102 0 1 10691000 45393 3400 30194 30214 44690 44690 0.04909169926202139 TEQAIHNY 8 Unmodified _TEQAIHNY_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.233154296875 2 488.230156 974.445759 0.33956 0.00016579 -0.12901 -6.2985E-05 0.21056 0.0001028 488.23000525120784 27.278 0.52971 25.549 25.326 25.855 -1.7296 27 14 3 0 0 0 0.23433 1 4558 4558 42.095 28.587 1 5409800 45394 2220 30195 30215 44691 44691 -0.04248566521664543 TEQAIHNY 8 Unmodified _TEQAIHNY_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 488.230156 974.445759 0.23543 0.00011494 0.018063 8.8189E-06 0.25349 0.00012376 488.23005798990755 25.529 0.45263 25.529 25.391 25.843 0 -0.05228 0.00025288 NaN 42.095 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 5723400 45395 2220 30195 30215 -0.04248566521664543 TEQAIHNY 8 Unmodified _TEQAIHNY_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 488.230156 974.445759 1.0613 0.00051817 -0.96435 -0.00047083 0.096966 4.7342E-05 488.22962843420754 27.446 0.52863 25.664 25.415 25.943 -1.7821 0.082471 -0.00070641 NaN 42.095 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4955900 45396 2220 30195 30215 -0.04248566521664543 TEQAIHNY 8 Unmodified _TEQAIHNY_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 488.230156 974.445759 -0.071024 -3.4676E-05 0.24321 0.00011874 0.17219 8.4067E-05 488.23016398937585 27.506 0.53162 25.584 25.329 25.861 -1.9222 0.0024959 0.00047273 NaN 42.095 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4547100 45397 2220 30195 30215 -0.04248566521664543 TEQASGWPLP 10 Unmodified _TEQASGWPLP_ 0 0 0 ENST00000592323.5_1_17:42426762-42426843:+|nuORF;ENST00000053867.7_1_17:42426588-42426843:+|nuORF ENST00000592323.5_1_17:42426762-42426843:+|nuORF ENST00000592323.5_1_17:42426762-42426843:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7793579101562 2 543.266739 1084.51892 0.27991 0.00015207 -0.51068 -0.00027744 -0.23077 -0.00012537 543.2665001304274 142.48 1.6257 137.82 136.84 138.47 -4.656 67 46 2 0 0 0 0.23598 2 28200 28200;28235 41.956 30.315 1 4586400 45398 8069 30196 30216 44692;44693 44692 -0.019954377990416106 TEQASGWPLP 10 Unmodified _TEQASGWPLP_ 0 0 0 ENST00000592323.5_1_17:42426762-42426843:+|nuORF;ENST00000053867.7_1_17:42426588-42426843:+|nuORF ENST00000592323.5_1_17:42426762-42426843:+|nuORF ENST00000592323.5_1_17:42426762-42426843:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7699584960938 2 543.266739 1084.51892 0.10939 5.9427E-05 0.152 8.2576E-05 0.26139 0.000142 543.2667734452239 142.65 1.3806 137.63 137 138.38 -5.0261 67 39 2 0 0 0 0.53695 2 27408 27408;27608 22.658 11.834 1 3462400 45399 8069 30196 30216 44694;44695 44694 -0.019954377990416106 TEQASGWPLP 10 Unmodified _TEQASGWPLP_ 0 0 0 ENST00000592323.5_1_17:42426762-42426843:+|nuORF;ENST00000053867.7_1_17:42426588-42426843:+|nuORF ENST00000592323.5_1_17:42426762-42426843:+|nuORF ENST00000592323.5_1_17:42426762-42426843:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77001953125 2 543.266739 1084.51892 0.36945 0.00020071 -0.42129 -0.00022888 -0.051848 -2.8167E-05 543.266478725647 142.41 1.5525 137.51 136.79 138.34 -4.8982 67 43 2 0 0 0 0.18128 3 27476 27372;27431;27476 45.74 29.893 1 2598700 45400 8069 30196 30216 44696;44697;44698 44698 -0.019954377990416106 TEQDKVKA 8 Unmodified _TEQDKVKA_ 0 0 0 ENST00000302472.3_1_5:40680399-40680531:+|nuORF ENST00000302472.3_1_5:40680399-40680531:+|nuORF ENST00000302472.3_1_5:40680399-40680531:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23553466796875 2 459.748182 917.481811 -0.12056 -5.5427E-05 0.054417 2.5018E-05 -0.066144 -3.0409E-05 459.7483985716278 44.646 0.45493 41.856 41.569 42.024 -2.79 14 12 2 0 0 0 0.81042 1 8370 8370 30.225 14.378 1 859330 45401 8573 30197 30217 44699 44699 0.019768906551917098 TEQDMNDWL 9 Unmodified _TEQDMNDWL_ 0 0 0 nc|ENSG00000205356|Q7Z6L1-3|TECPR1;TECPR1|p.I932Sfs*105|1|0.13|ENSG00000205356|chr7:98223125-98223125|G/-|frameshift_variant;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3129272460938 2 576.237321 1150.46009 NaN NaN NaN NaN NaN NaN NaN 23.527 1 21.738 21.238 22.238 -1.7886 0 0 0 0.22621 1 3787 3787 15.847 1.0089 1 45402 7643 30198 30218 44700 44700 -0.10912282155686626 TEQEKMDY 8 Unmodified _TEQEKMDY_ 0 0 0 nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;ENSG00000091428|ENST00000397081|RAPGEF4;nc|ENSG00000091428|Q8WZA2-2|RAPGEF4 nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2791748046875 2 522.221139 1042.42773 NaN NaN NaN NaN NaN NaN NaN 53.87 1 50.735 50.235 51.235 -3.1352 0 0 0 0.21486 1 9922 9922 7.2892 1.5288 1 45403 1809 30199 30219 44701 44701 -0.09179069558695119 TEQFTHAF 8 Unmodified _TEQFTHAF_ 0 0 0 ENST00000565396.5_1_16:2050390-2052694:-|nuORF;ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598 ENST00000565396.5_1_16:2050390-2052694:-|nuORF ENST00000565396.5_1_16:2050390-2052694:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2566223144531 2 490.727249 979.439946 0.39176 0.00019225 -1.0347 -0.00050776 -0.64295 -0.00031552 490.72682312069793 75.905 0.83221 75.905 75.512 76.344 0 39 23 2 0 0 0 0.11963 1 14740 14740 81.864 47.762 1 4627400 45404 5862 30200 30220 44702 44702 -0.050596650333318394 TEQFTHAF 8 Unmodified _TEQFTHAF_ 0 0 0 ENST00000565396.5_1_16:2050390-2052694:-|nuORF;ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598 ENST00000565396.5_1_16:2050390-2052694:-|nuORF ENST00000565396.5_1_16:2050390-2052694:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2734375 2 490.727249 979.439946 0.14182 6.9596E-05 -0.48762 -0.00023929 -0.3458 -0.00016969 490.72701619632 79.54 0.81124 76.029 75.519 76.33 -3.5102 40 22 2 0 0 0 0.14574 1 15525 15525 88.904 48.946 1 4892400 45405 5862 30200 30220 44703 44703 -0.050596650333318394 TEQFTHAF 8 Unmodified _TEQFTHAF_ 0 0 0 ENST00000565396.5_1_16:2050390-2052694:-|nuORF;ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598 ENST00000565396.5_1_16:2050390-2052694:-|nuORF ENST00000565396.5_1_16:2050390-2052694:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2648620605469 2 490.727249 979.439946 0.016222 7.9605E-06 -0.84361 -0.00041398 -0.82738 -0.00040602 490.7268583983032 79.671 0.77808 75.866 75.475 76.253 -3.8048 43 21 3 0 0 0 0.18066 1 15083 15083 74.423 43.786 1 3073500 45406 5862 30200 30220 44704 44704 -0.050596650333318394 TEQFTHAF 8 Unmodified _TEQFTHAF_ 0 0 0 ENST00000565396.5_1_16:2050390-2052694:-|nuORF;ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598 ENST00000565396.5_1_16:2050390-2052694:-|nuORF ENST00000565396.5_1_16:2050390-2052694:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2646179199219 2 490.727249 979.439946 -0.33068 -0.00016227 -0.45963 -0.00022555 -0.79031 -0.00038783 490.72704190586563 79.509 0.77058 75.833 75.476 76.247 -3.676 51 21 3 0 0 0 0.58903 1 15094 15094 38.151 25.62 1 3837500 45407 5862 30200 30220 44705 44705 -0.050596650333318394 TEQIETLNF 9 Unmodified _TEQIETLNF_ 0 0 0 REV__CON__A2I7N1 REV__CON__A2I7N1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7708740234375 2 547.771854 1093.52915 0.18801 0.00010299 0.9544 0.00052279 1.1424 0.00062578 547.7714955107144 134.17 0.20485 129.53 129.43 129.63 -4.6399 6 5 2 0 0 0 0.13708 1 26456 26456 46.021 9.8939 1 1868900 + + 45408 13501 30201 30221 44706 44706 -0.01386874864465426 TEQIIQTF 8 Unmodified _TEQIIQTF_ 0 0 0 nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25970458984375 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 127.34 1 127.34 126.84 127.84 0 0 0 0 0.22757 1 25134 25134 6.3914 5.9831 1 45409 5966 30202 30222 44707 44707 0.012100613149982564 TEQLGQAVA 9 Unmodified _TEQLGQAVA_ 0 0 0 REV__nc|ENSG00000187627|P0DJD0|RGPD1 REV__nc|ENSG00000187627|P0DJD0|RGPD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.24029541015625 2 458.740357 915.46616 -0.10039 -4.6054E-05 0.40274 0.00018475 0.30235 0.0001387 458.74065945100966 43.082 0.66781 40.431 40.024 40.692 -2.651 28 18 2 0 0 0 0.19271 1 7749 7749 37.974 3.8716 1 2669400 + 45410 18957 30203 30223 44708 44708 0.005046041381433497 TEQLGQAVA 9 Unmodified _TEQLGQAVA_ 0 0 0 REV__nc|ENSG00000187627|P0DJD0|RGPD1 REV__nc|ENSG00000187627|P0DJD0|RGPD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.740357 915.46616 0.41008 0.00018812 -0.1167 -5.3533E-05 0.29339 0.00013459 458.7402343102523 40.458 0.53885 40.458 40.136 40.675 0 0.04361 -0.00040736 NaN 37.974 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2931000 + 45411 18957 30203 30223 0.005046041381433497 TEQLGQAVA 9 Unmodified _TEQLGQAVA_ 0 0 0 REV__nc|ENSG00000187627|P0DJD0|RGPD1 REV__nc|ENSG00000187627|P0DJD0|RGPD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.740357 915.46616 -0.20494 -9.4015E-05 0.48278 0.00022147 0.27784 0.00012745 458.7405657864194 43.041 0.64204 40.322 39.84 40.482 -2.7191 -0.092322 0.00014265 NaN 37.974 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3475800 + 45412 18957 30203 30223 0.005046041381433497 TEQLKPLHE 9 Unmodified _TEQLKPLHE_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25246445-25268811:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.781982421875 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 134.23 1 129.41 128.91 129.91 -4.8175 0 0 0 0.22962 1 25841 25841 14.838 0 1 45413 4703 30204 30224 44709 44709 0.03372824126358864 TEQLRRLT 8 Unmodified _TEQLRRLT_ 0 0 0 ENSG00000197557|ENST00000355689|TTC30A ENSG00000197557|ENST00000355689|TTC30A ENSG00000197557|ENST00000355689|TTC30A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.4920959472656 3 339.533091 1015.57744 -0.39502 -0.00013412 0.043842 1.4886E-05 -0.35118 -0.00011924 339.5330745751202 18.129 0.19991 16.857 16.73 16.93 -1.2722 8 5 2 0 0 0 0.89811 1 2682 2682 0.063987 0.034705 1 208280 45414 7378 30205 30225 44710 44710 0.07027663566088904 TEQLRRLT 8 Unmodified _TEQLRRLT_ 0 0 0 ENSG00000197557|ENST00000355689|TTC30A ENSG00000197557|ENST00000355689|TTC30A ENSG00000197557|ENST00000355689|TTC30A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 339.533091 1015.57744 -0.45401 -0.00015415 0.27171 9.2254E-05 -0.1823 -6.1896E-05 339.53307618636853 16.972 0.17854 16.972 16.851 17.03 0 0.057573 0.00013834 NaN 0.063987 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 260510 45415 7378 30205 30225 0.07027663566088904 TEQMTQEL 8 Unmodified _TEQMTQEL_ 0 0 0 REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant REV__DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2584533691406 2 490.223682 978.432811 NaN NaN NaN NaN NaN NaN NaN 97.494 1 93.396 92.896 93.896 -4.0978 0 0 0 0.20135 1 19130 19130 24.021 2.2739 1 + 45416 13707 30206 30226 44711 44711 -0.057267656960675595 TEQNNTEYP 9 Unmodified _TEQNNTEYP_ 0 0 0 REV__ENST00000422161.2_1_10:97604371-97605854:+|nuORF REV__ENST00000422161.2_1_10:97604371-97605854:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7716064453125 2 548.233093 1094.45163 -0.092005 -5.044E-05 -1.5598 -0.00085513 -1.6518 -0.00090557 548.2323618636722 105.42 0.56123 101.16 100.89 101.45 -4.2638 28 15 2 0 0 0 0.77734 1 20748 20748 19.257 4.6753 1 1699200 + 45417 16446 30207 30227 44712 44712 -0.0918151280066013 TEQPQTLP 8 Unmodified _TEQPQTLP_ 0 0 0 POLE|p.A456P|1|0.39|ENSG00000177084|chr12:132673271-132673271|C/G|missense_variant POLE|p.A456P|1|0.39|ENSG00000177084|chr12:132673271-132673271|C/G|missense_variant POLE|p.A456P|1|0.39|ENSG00000177084|chr12:132673271-132673271|C/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2380065917969 2 457.234907 912.455261 0.26582 0.00012154 -0.018199 -8.3212E-06 0.24762 0.00011322 457.23487050396375 34.146 1.1698 34.146 33.654 34.823 0 74 33 3 0 0 0 0.71974 1 6281 6281 10.074 0 1 2978800 45418 12809 30208 30228 44713 44713 -0.004467982361461509 TEQVQRAYA 9 Unmodified _TEQVQRAYA_ 0 0 0 BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant;ENSG00000011114|ENST00000334746|BTBD7;BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant;BTBD7|p.P760Lfs*61|1|0.45|ENSG00000011114|chr14:93246129-93246129|G/-|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2865600585938 2 533.269813 1064.52507 -0.082584 -4.4039E-05 0.10522 5.611E-05 0.022635 1.2071E-05 533.2698127370397 41.989 0.82595 39.27 38.763 39.589 -2.7191 51 23 4 0 0 0 0.60805 1 7762 7762 12.532 0 1 8064100 45419 343 30209 30229 44714 44714 -0.004609195675357114 TERCRAFP 8 Unmodified _TERCRAFP_ 0 0 0 REV__ENST00000532009.1_1_11:117863994-117864732:+|nuORF REV__ENST00000532009.1_1_11:117863994-117864732:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.255126953125 2 490.242544 978.470534 NaN NaN NaN NaN NaN NaN NaN 67.413 1 67.413 66.913 67.913 0 0 0 0 0.20896 1 13030 13030 18.135 5.6034 1 + 45420 22776 30210 30230 44715 44715 -0.019562099199447402 TERCRAFP 8 Unmodified _TERCRAFP_ 0 0 0 REV__ENST00000532009.1_1_11:117863994-117864732:+|nuORF REV__ENST00000532009.1_1_11:117863994-117864732:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2641906738281 2 490.242544 978.470534 -0.14472 -7.0946E-05 -0.6775 -0.00033214 -0.82221 -0.00040308 490.24206236411067 68.162 0.67969 68.162 67.79 68.469 0 24 18 2 0 0 0 0.8784 1 13119 13119 0.25148 0 1 2314800 + 45421 22776 30210 30230 44716 44716 -0.019562099199447402 TERCRAFP 8 Unmodified _TERCRAFP_ 0 0 0 REV__ENST00000532009.1_1_11:117863994-117864732:+|nuORF REV__ENST00000532009.1_1_11:117863994-117864732:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2649841308594 2 490.242544 978.470534 NaN NaN NaN NaN NaN NaN NaN 92.717 1 88.791 88.291 89.291 -3.9251 0 0 0 0.23025 1 18160 18160 0.12286 0 1 + 45422 22776 30210 30230 44717 44717 -0.019562099199447402 TEREAAEI 8 Unmodified _TEREAAEI_ 0 0 0 ENSG00000114738|ENST00000621469|MAPKAPK3 ENSG00000114738|ENST00000621469|MAPKAPK3 ENSG00000114738|ENST00000621469|MAPKAPK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2316589355469 2 459.729989 917.445425 0.285 0.00013102 0.073802 3.3929E-05 0.3588 0.00016495 459.7299936342706 27.45 0.24436 27.45 27.318 27.562 0 9 6 2 0 0 0 0.66247 1 4837 4837 18.146 0 1 331180 45423 2807 30211 30231 44718 44718 -0.016599862415432654 TEREEQKDFV 10 Unmodified _TEREEQKDFV_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2;SPTLC2|p.A102V|1|0.07|ENSG00000100596|chr14:77597208-77597208|G/A|missense_variant;ENST00000557566.1_1_14:78045296-78063654:-|nuORF ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.1419677734375 3 427.542091 1279.60444 -1.019 -0.00043567 0.94493 0.000404 -0.074069 -3.1668E-05 427.5424170268536 21.106 0.41696 19.385 19.149 19.566 -1.7211 21 11 3 0 0 0 0.91149 1 3286 3286 3.3196 1.7274 1 544130 45424 1994 30212 30232 44719 44719 -0.02417317404069763 TEREILIS 8 Unmodified _TEREILIS_ 0 0 0 XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.R1906Nfs*2|1|0.48|ENSG00000163092|chr2:167247632-167247635|CAGA/-|frameshift_variant XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2541809082031 2 480.771657 959.528761 -0.13466 -6.4741E-05 0.10884 5.2326E-05 -0.025823 -1.2415E-05 480.7715965080076 48.716 0.48225 45.709 45.415 45.897 -3.0068 24 13 2 0 0 0 0.58432 2 8875 8875;8881 23.148 0 1 1662300 45425 5399 30213 30233 44720;44721 44720 0.04737750206345481 TERKEGTKC 9 Unmodified _TERKEGTKC_ 0 0 0 ENST00000453096.6_1_11:18387575-18387641:+|nuORF ENST00000453096.6_1_11:18387575-18387641:+|nuORF ENST00000453096.6_1_11:18387575-18387641:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.1798400878906 3 351.178207 1050.51279 NaN NaN NaN NaN NaN NaN NaN 120.66 1 116.01 115.51 116.51 -4.645 0 0 0 0.23508 1 23162 23162 1.1933 0 1 45426 10002 30214 30234 44722 44722 -0.010442793022320984 TERKEGTKC 9 Unmodified _TERKEGTKC_ 0 0 0 ENST00000453096.6_1_11:18387575-18387641:+|nuORF ENST00000453096.6_1_11:18387575-18387641:+|nuORF ENST00000453096.6_1_11:18387575-18387641:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 351.17822265625 3 351.178207 1050.51279 NaN NaN NaN NaN NaN NaN NaN 105.54 1 101.44 100.94 101.94 -4.0913 0 0 0 0.23508 1 20301 20301 1.1933 0 1 45427 10002 30214 30234 44723 44723 -0.010442793022320984 TERKEGTKC 9 Unmodified _TERKEGTKC_ 0 0 0 ENST00000453096.6_1_11:18387575-18387641:+|nuORF ENST00000453096.6_1_11:18387575-18387641:+|nuORF ENST00000453096.6_1_11:18387575-18387641:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 351.1494445800781 3 351.178207 1050.51279 NaN NaN NaN NaN NaN NaN NaN 150.72 1 145.6 145.1 146.1 -5.1204 0 0 0 0.23508 1 29213 29213 1.1933 0 1 45428 10002 30214 30234 44724 44724 -0.010442793022320984 TERKETKA 8 Unmodified _TERKETKA_ 0 0 0 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7751159667969 2 481.766906 961.519259 NaN NaN NaN NaN NaN NaN NaN 90.212 1 90.212 89.712 90.712 0 0 0 0 0.21486 1 17621 17621 11.64 1.4569 1 45429 3151 30215 30235 44725 44725 0.03695981920805025 TERMAAQR 8 Unmodified _TERMAAQR_ 0 0 0 REV__nc|ENSG00000274026|Q08E93|FAM27E3 REV__nc|ENSG00000274026|Q08E93|FAM27E3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7818298339844 2 481.74545 961.476348 NaN NaN NaN NaN NaN NaN NaN 29.4 1 27.444 26.944 27.944 -1.9561 0 0 0 0.21292 1 5284 5284 14.838 1.3304 1 + 45430 24306 30216 30236 44726 44726 -0.005931114082727618 TERQKYSGP 9 Unmodified _TERQKYSGP_ 0 0 0 REV__ENSG00000138433|ENST00000342016|CIR1 REV__ENSG00000138433|ENST00000342016|CIR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2716674804688 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 18.222 1 18.222 17.722 18.722 0 0 0 0 0.23508 1 2919 2919 10.074 1.3285 1 + 45431 16460 30217 30237 44727 44727 -0.004609195675357114 TERRREREQRE 11 Unmodified _TERRREREQRE_ 0 0 0 SAFB2|p.G824Afs*8|2|0.21|ENSG00000130254|chr19:5590332-5590332|C/-|frameshift_variant;SAFB2|p.P839Lfs*16|1|0.2|ENSG00000130254|chr19:5590287-5590287|G/-|frameshift_variant;SAFB2|p.L837Cfs*18|1|0.18|ENSG00000130254|chr19:5590295-5590295|C/-|frameshift_variant;ENSG00000130254|ENST00000252542|SAFB2 SAFB2|p.G824Afs*8|2|0.21|ENSG00000130254|chr19:5590332-5590332|C/-|frameshift_variant SAFB2|p.G824Afs*8|2|0.21|ENSG00000130254|chr19:5590332-5590332|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 772.6773681640625 2 772.903651 1543.79275 NaN NaN NaN NaN NaN NaN NaN 178.07 1 173.2 172.7 173.7 -4.8686 0 0 0 0.22632 1 35450 35450 0.172 0 1 45432 3595 30218 30238 44728 44728 0.04260353292943364 TERSELWSA 9 Unmodified _TERSELWSA_ 0 0 0 CAPN11|p.F210L|1|0.39|ENSG00000137225|chr6:44173041-44173041|C/A|missense_variant CAPN11|p.F210L|1|0.39|ENSG00000137225|chr6:44173041-44173041|C/A|missense_variant CAPN11|p.F210L|1|0.39|ENSG00000137225|chr6:44173041-44173041|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2651977539062 2 539.76182 1077.50909 0.75583 0.00040797 0.99837 0.00053888 1.7542 0.00094685 539.7625516434124 29.77 1.0512 27.654 27.102 28.154 -2.1167 99 29 4 0 0 0 0.60308 1 5403 5403 18.146 5.6148 1 13706000 45433 382 30219 30239 44729 44729 -0.026566258044113056 TERTANKRC 9 Unmodified _TERTANKRC_ 0 0 0 REV__IRX6|p.R149C|1|0.17|ENSG00000159387|chr16:55327617-55327617|C/T|missense_variant REV__IRX6|p.R149C|1|0.17|ENSG00000159387|chr16:55327617-55327617|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016906738281 3 360.185585 1077.53493 0.3202 0.00011533 -0.69738 -0.00025119 -0.37717 -0.00013585 360.1852956829572 29.18 0.59568 27.287 26.843 27.439 -1.8928 28 16 2 0 0 0 0.68435 1 4930 4930 4.5289 2.0304 1 542940 + 45434 23677 30220 30240 44730 44730 -0.0007405483379443467 TERTANKRC 9 Unmodified _TERTANKRC_ 0 0 0 REV__IRX6|p.R149C|1|0.17|ENSG00000159387|chr16:55327617-55327617|C/T|missense_variant REV__IRX6|p.R149C|1|0.17|ENSG00000159387|chr16:55327617-55327617|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 360.185585 1077.53493 -0.248 -8.9327E-05 -0.22406 -8.0703E-05 -0.47206 -0.00017003 360.18547712866837 29.184 0.55874 27.187 26.9 27.459 -1.9962 -0.072326 0.00038997 NaN 4.5289 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 577110 + 45435 23677 30220 30240 -0.0007405483379443467 TERTRLPG 8 Unmodified _TERTRLPG_ 0 0 0 nc|ENSG00000185736|Q9NS39-2|ADARB2 nc|ENSG00000185736|Q9NS39-2|ADARB2 nc|ENSG00000185736|Q9NS39-2|ADARB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2372741699219 2 465.261791 928.509028 -0.082415 -3.8344E-05 0.87655 0.00040783 0.79414 0.00036948 465.262112338943 25.707 0.31334 23.854 23.672 23.986 -1.8534 12 8 2 0 0 0 0.99494 1 4214 4214 4.756 0.81161 1 493300 45436 12515 30221 30241 44731 44731 0.04191418986226836 TERVVRAVL 9 Unmodified _TERVVRAVL_ 0 0 0 ENST00000376552.6_1_9:82186844-82187042:+|nuORF ENST00000376552.6_1_9:82186844-82187042:+|nuORF ENST00000376552.6_1_9:82186844-82187042:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 347.8542785644531 3 348.217102 1041.62948 -0.00073614 -2.5634E-07 1.2572 0.00043777 1.2565 0.00043752 348.21742607239844 24.163 0.2435 22.629 22.507 22.751 -1.5342 11 6 2 0 0 0 0.61568 1 3903 3903 0.0033805 0 1 330900 45437 9251 30222 30242 44732 44732 0.11032826979840138 TERWFVLK 8 Unmodified _TERWFVLK_ 0 0 0 SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant;ENST00000534562.1_1_11:9749605-9771962:+|nuORF;ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70 SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant SWAP70|p.L276Sfs*2|1|0.22|ENSG00000133789|chr11:9729374-9729374|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2071838378906 3 360.206315 1077.59712 NaN NaN NaN NaN NaN NaN NaN 111.73 1 107.5 107 108 -4.2289 0 0 0 0.23584 1 21509 21509 0.0082765 0 1 45438 3815 30223 30243 44733 44733 0.06142039576843672 TESAASPG 8 Unmodified _TESAASPG_ 0 0 0 REV__ENSG00000254585|ENST00000650528|MAGEL2 REV__ENSG00000254585|ENST00000650528|MAGEL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20123291015625 2 360.163951 718.313348 NaN NaN NaN NaN NaN NaN NaN 129.72 1 129.72 129.22 130.22 0 0 0 0 0.21486 1 25631 25631 2.3027 0 1 + 45439 19848 30224 30244 44734 44734 -0.05707591258465072 TESATKPDM 9 Unmodified _TESATKPDM_ 0 0 0 REV__ENSG00000145819|ENST00000645722|ARHGAP26 REV__ENSG00000145819|ENST00000645722|ARHGAP26 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27410888671875 2 490.223682 978.432811 NaN NaN NaN NaN NaN NaN NaN 81.941 1 78.384 77.884 78.884 -3.557 0 0 0 0.20628 1 16010 16010 21.747 3.6117 1 + 45440 16855 30225 30245 44735 44735 -0.057267656960675595 TESCKCRSNCD 11 Unmodified _TESCKCRSNCD_ 0 0 0 REV__nc|ENSG00000139155|Q9NYB5-4|SLCO1C1 REV__nc|ENSG00000139155|Q9NYB5-4|SLCO1C1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.232666015625 3 415.82674 1244.45839 -0.2557 -0.00010633 -0.94903 -0.00039463 -1.2047 -0.00050096 415.8262985332944 103.08 1.8952 98.89 98.027 99.923 -4.1861 154 54 3 0 0 0 0.88867 1 20406 20406 0.094841 0 1 10346000 + 45441 16503 30226 30246 44736 44736 -0.1540598250758194 TESDDHQYV 9 Unmodified _TESDDHQYV_ 0 0 0 REV__ENST00000567704.5_1_15:78190746-78191211:+|nuORF REV__ENST00000567704.5_1_15:78190746-78191211:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7689208984375 2 547.225268 1092.43598 0.56093 0.00030696 0.19602 0.00010727 0.75695 0.00041422 547.225547361228 42.854 0.59837 42.854 42.422 43.02 0 27 16 2 0 0 0 0.8319 1 8039 8039 7.9102 0 1 1511500 + 45442 13599 30227 30247 44737 44737 -0.10653799317719859 TESDDLHTF 9 Unmodified _TESDDLHTF_ 0 0 0 nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENST00000525980.5_1_9:134025776-134070755:+|nuORF;NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant nc|ENSG00000126883|P35658-2|NUP214 nc|ENSG00000126883|P35658-2|NUP214 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.282470703125 2 532.730186 1063.44582 0.32067 0.00017083 -0.17486 -9.3154E-05 0.14581 7.7675E-05 532.7301038522083 63.834 0.58599 60.577 60.329 60.915 -3.2567 22 16 2 0 0 0 0.13686 1 11981 11981 61.357 21.4 1 1415900 45443 3454 30228 30248 44738 44738 -0.08336611312347486 TESEFTEF 8 Unmodified _TESEFTEF_ 0 0 0 ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 990.4135131835938 1 989.409834 988.402557 0.69186 0.00068453 -0.083909 -8.3021E-05 0.60795 0.00060151 989.4089718206401 107.94 0.55838 107.94 107.62 108.18 0 24 15 2 0 0 0 0.25036 2 21201 21201;21251 40.449 21.01 1 2594800 45444 2022 30229 30249 44739;44740 44739 -0.09210801089614051 TESEFTEF 8 Unmodified _TESEFTEF_ 0 0 0 ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 990.4118041992188 1 989.409834 988.402557 0.70743 0.00069994 -0.16642 -0.00016466 0.54101 0.00053528 989.4086482089223 112.26 0.51707 107.99 107.77 108.28 -4.2725 19 14 2 0 0 0 0.13334 1 21627 21627 56.541 37.102 1 1255100 45445 2022 30229 30249 44741 44741 -0.09210801089614051 TESELQQSY 9 Unmodified _TESELQQSY_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7924194335938 2 542.743293 1083.47203 0.049971 2.7121E-05 -0.12459 -6.7618E-05 -0.074615 -4.0497E-05 542.7433477251653 49.915 1.2996 46.916 46.136 47.436 -2.999 51 33 3 0 0 0 0.11717 1 9143 9143 49.933 31.787 1 2061700 45446 1503 30230 30250 44742 44742 -0.0663634214083686 TESELQQSY 9 Unmodified _TESELQQSY_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.743293 1083.47203 0.68078 0.00036949 -0.76325 -0.00041425 -0.082472 -4.4761E-05 542.7428417694821 46.68 0.84129 46.68 46.139 46.98 0 -0.14425 -0.00075948 NaN 49.933 38 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1607900 45447 1503 30230 30250 -0.0663634214083686 TESELQQSY 9 Unmodified _TESELQQSY_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.743293 1083.47203 0.10739 5.8283E-05 0.33973 0.00018439 0.44712 0.00024267 542.7431302748496 49.724 0.97973 46.843 46.38 47.36 -2.8811 0.019255 0.0004378 NaN 49.933 58 27 4 NaN NaN NaN NaN 0 NaN NaN 0 3461600 45448 1503 30230 30250 -0.0663634214083686 TESELQQSY 9 Unmodified _TESELQQSY_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.743293 1083.47203 0.014931 8.1039E-06 0.41595 0.00022576 0.43088 0.00023386 542.7433832482221 49.864 0.89384 46.857 46.416 47.309 -3.0068 0.033309 0.00052053 NaN 49.933 55 25 4 NaN NaN NaN NaN 0 NaN NaN 0 2209100 45449 1503 30230 30250 -0.0663634214083686 TESKEALATP 10 Unmodified _TESKEALATP_ 0 0 0 ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25 ENSG00000136197|ENST00000350427|C7orf25 ENSG00000136197|ENST00000350427|C7orf25 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6853637695312 2 523.771854 1045.52915 -0.65248 -0.00034175 1.5159 0.00079398 0.8634 0.00045222 523.7721711050659 22.277 1.1827 20.824 19.867 21.049 -1.4535 67 33 4 0 0 0 0.80147 1 3541 3541 20.415 7.883 1 1332400 45450 3990 30231 30251 44743 44743 0.008211251355078275 TESKLRREFEV 11 Unmodified _TESKLRREFEV_ 0 0 0 nc|ENSG00000104852|P08621-3|SNRNP70;nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70 nc|ENSG00000104852|P08621-3|SNRNP70 nc|ENSG00000104852|P08621-3|SNRNP70 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2544860839844 3 465.252652 1392.73613 NaN NaN NaN NaN NaN NaN NaN 102.68 1 98.499 97.999 98.999 -4.1861 0 0 0 0.22632 1 20186 20186 0.0059557 0 1 45451 2260 30232 30252 44744 44744 0.055469126836896976 TESPPSLAA 9 Unmodified _TESPPSLAA_ 0 0 0 nc|ENSG00000187609|Q8N9H8-4|EXD3;ENSG00000187609|ENST00000340951|EXD3;ENST00000475006.1_1_9:140262369-140269195:-|nuORF nc|ENSG00000187609|Q8N9H8-4|EXD3;ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2230224609375 2 436.721633 871.428712 -0.0035868 -1.5664E-06 -0.24771 -0.00010818 -0.25129 -0.00010975 436.72148353489786 56.132 0.90868 56.132 55.766 56.675 0 62 25 3 0 0 0 0.049627 5 10779 10684;10698;10711;10730;10779 71.134 25.113 1 8301900 45452 7115;10271 30233 30253 44745;44746;44747;44748;44749 44749 -0.01214487127481334 TESPPSLAA 9 Unmodified _TESPPSLAA_ 0 0 0 nc|ENSG00000187609|Q8N9H8-4|EXD3;ENSG00000187609|ENST00000340951|EXD3;ENST00000475006.1_1_9:140262369-140269195:-|nuORF nc|ENSG00000187609|Q8N9H8-4|EXD3;ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2232971191406 2 436.721633 871.428712 -0.18202 -7.9493E-05 0.10897 4.7591E-05 -0.073051 -3.1903E-05 436.7216244253488 59.267 1.1614 56.356 55.784 56.946 -2.9105 87 32 4 0 0 0 0.026664 4 11415 11361;11415;11435;11463 85.272 26.84 1 25700000 45453 7115;10271 30233 30253 44750;44751;44752;44753 44751 -0.01214487127481334 TESPPSLAA 9 Unmodified _TESPPSLAA_ 0 0 0 nc|ENSG00000187609|Q8N9H8-4|EXD3;ENSG00000187609|ENST00000340951|EXD3;ENST00000475006.1_1_9:140262369-140269195:-|nuORF nc|ENSG00000187609|Q8N9H8-4|EXD3;ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2231750488281 2 436.721633 871.428712 0.046111 2.0138E-05 -0.15584 -6.8058E-05 -0.10973 -4.792E-05 436.7214840093368 59.705 1.1993 56.392 55.637 56.836 -3.3139 77 33 3 0 0 0 0.026664 3 11105 11067;11105;11157 85.272 33.004 1 14419000 45454 7115;10271 30233 30253 44754;44755;44756 44755 -0.01214487127481334 TESPPSLAA 9 Unmodified _TESPPSLAA_ 0 0 0 nc|ENSG00000187609|Q8N9H8-4|EXD3;ENSG00000187609|ENST00000340951|EXD3;ENST00000475006.1_1_9:140262369-140269195:-|nuORF nc|ENSG00000187609|Q8N9H8-4|EXD3;ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22308349609375 2 436.721633 871.428712 -0.05427 -2.3701E-05 0.059973 2.6191E-05 0.005703 2.4906E-06 436.7215909204355 59.601 1.0841 56.378 55.734 56.818 -3.2237 68 30 3 0 0 0 0.029966 4 11097 11097;11147;11155;11202 81.613 29.345 1 13565000 45455 7115;10271 30233 30253 44757;44758;44759;44760 44757 -0.01214487127481334 TESPQEPPA 9 Unmodified _TESPQEPPA_ 0 0 0 REV__ENSG00000169895|ENST00000380155|SYAP1 REV__ENSG00000169895|ENST00000380155|SYAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.724365234375 2 478.221997 954.429441 0.42851 0.00020492 0.7075 0.00033834 1.136 0.00054327 478.22155861109513 32.992 1.2464 30.776 30.177 31.423 -2.2158 97 35 4 0 0 0 0.54354 1 5860 5860 16.942 0 1 3450700 + 45456 18125 30234 30254 44761 44761 -0.04959692478428224 TESPQRVI 8 Unmodified _TESPQRVI_ 0 0 0 CCDC47-PMPCA|1|fusion;ENST00000584112.1_1_17:61843235-61843535:-|nuORF;CCDC47|p.N116Kfs*2|1|0.32|ENSG00000108588|chr17:63764764-63764765|-/T|frameshift_variant;nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47 CCDC47-PMPCA|1|fusion CCDC47-PMPCA|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2561950683594 2 465.256174 928.497795 -0.12311 -5.7278E-05 0.011768 5.475E-06 -0.11134 -5.1803E-05 465.2561486702916 47.546 0.66132 44.677 44.357 45.018 -2.869 32 18 2 0 0 0 0.62642 1 9036 9036 20.454 2.3073 1 8493400 45457 421 30235 30255 44762 44762 0.03068596892092046 TESQRVLFV 9 Unmodified _TESQRVLFV_ 0 0 0 REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1 REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 106.61 1 106.61 106.11 107.11 0 0 0 0 0.23508 1 20960 20960 5.2969 0 1 + 45458 24188 30236 30256 44763 44763 0.0461712798901317 TESQRVLFV 9 Unmodified _TESQRVLFV_ 0 0 0 REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1 REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2018737792969 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 106.87 1 106.87 106.37 107.37 0 0 0 0 0.23508 1 21011 21011 5.2969 0 1 + 45459 24188 30236 30256 44764 44764 0.0461712798901317 TESQRVLFV 9 Unmodified _TESQRVLFV_ 0 0 0 REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1 REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2012634277344 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 111.16 1 106.93 106.43 107.43 -4.2289 0 0 0 0.23508 1 21392 21392 5.2969 0 1 + 45460 24188 30236 30256 44765 44765 0.0461712798901317 TESSDITEY 9 Unmodified _TESSDITEY_ 0 0 0 ENST00000440362.5_1_7:100962235-100964990:-|nuORF;nc|ENSG00000128581|Q9H7X7-2|IFT22;ENSG00000128581|ENST00000315322|IFT22 ENST00000440362.5_1_7:100962235-100964990:-|nuORF ENST00000440362.5_1_7:100962235-100964990:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2733154296875 2 522.722027 1043.4295 -0.60098 -0.00031414 0.82604 0.00043179 0.22506 0.00011764 522.7224347053722 53.458 0.94685 50.37 49.832 50.779 -3.0876 40 26 3 0 0 0 0.79204 1 9855 9855 11.64 7.6959 1 1814900 45461 3529 30237 30257 44766 44766 -0.0904773726908843 TESSQSFVA 9 Unmodified _TESSQSFVA_ 0 0 0 PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72357177734375 2 478.221997 954.429441 0.25707 0.00012294 -0.16387 -7.8365E-05 0.093208 4.4574E-05 478.2218582607028 47.743 1.1589 47.743 47.295 48.454 0 81 32 3 0 0 0 0.07738 5 9001 8958;9001;9045;9050;9098 62.573 30.267 1 7587900 45462 7534 30238 30258 44767;44768;44769;44770;44771 44768 -0.04959692478416855 TESSQSFVA 9 Unmodified _TESSQSFVA_ 0 0 0 PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72357177734375 2 478.221997 954.429441 -0.13812 -6.6052E-05 0.005426 2.5948E-06 -0.13269 -6.3458E-05 478.22192268506035 50.538 1.2764 47.657 47.182 48.458 -2.8811 86 35 3 0 0 0 0.04795 3 9580 9580;9627;9671 71.922 29.597 1 14339000 45463 7534 30238 30258 44772;44773;44774 44772 -0.04959692478416855 TESSQSFVA 9 Unmodified _TESSQSFVA_ 0 0 0 PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7236328125 2 478.221997 954.429441 0.031053 1.485E-05 -0.15025 -7.1855E-05 -0.1192 -5.7005E-05 478.22186531913195 50.681 1.177 47.636 47.191 48.368 -3.0453 96 33 4 0 0 0 0.04795 4 9282 9282;9298;9338;9388 71.922 33.948 1 11589000 45464 7534 30238 30258 44775;44776;44777;44778 44775 -0.04959692478416855 TESSQSFVA 9 Unmodified _TESSQSFVA_ 0 0 0 PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7236022949219 2 478.221997 954.429441 -0.059273 -2.8346E-05 -0.068631 -3.2821E-05 -0.1279 -6.1167E-05 478.2219006779079 50.779 1.3234 47.728 47.129 48.453 -3.0517 91 37 3 0 0 0 0.09143 4 9311 9311;9359;9412;9455 58.679 26.373 1 11511000 45465 7534 30238 30258 44779;44780;44781;44782 44779 -0.04959692478416855 TESSVAVY 8 Unmodified _TESSVAVY_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1;ENST00000411676.6_1_18:55274615-55283204:-|nuORF ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 855.4092407226562 1 855.40944 854.402163 0.11162 9.5482E-05 -2.08 -0.0017793 -1.9684 -0.0016838 855.4092258633408 54.161 1.2159 51.277 50.52 51.736 -2.8837 69 34 3 0 0 0 0.036592 1 10302 10302 98.807 46.114 1 51856000 45466 3852 30239 30259 44783 44783 -0.03086176018803144 TESSVAVY 8 Unmodified _TESSVAVY_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1;ENST00000411676.6_1_18:55274615-55283204:-|nuORF ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 855.40944 854.402163 0.62773 0.00053696 -2.1349 -0.0018262 -1.5071 -0.0012892 855.4088773338533 51.317 1.254 51.317 50.536 51.79 0 0.063129 6.8849E-05 NaN 98.807 70 35 3 NaN NaN NaN NaN 0 NaN NaN 0 55044000 45467 3852 30239 30259 -0.03086176018803144 TESSVKDPV 9 Unmodified _TESSVKDPV_ 0 0 0 ENSG00000214107|ENST00000397548|MAGEB1 ENSG00000214107|ENST00000397548|MAGEB1 ENSG00000214107|ENST00000397548|MAGEB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24578857421875 2 481.245472 960.476391 -0.30752 -0.00014799 1.0211 0.0004914 0.71358 0.00034341 481.24591869732234 19.152 0.49875 17.827 17.469 17.968 -1.3251 26 13 2 0 0 0 0.33512 1 2927 2927 0.40827 0 1 1447400 45468 7721 30240 30260 44784 44784 -0.005428329272831434 TESTDGHYGNY 11 Unmodified _TESTDGHYGNY_ 0 0 0 REV__ENST00000392582.2_1_2:172930337-172937166:+|nuORF REV__ENST00000392582.2_1_2:172930337-172937166:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7767944335938 2 622.246731 1242.47891 0.54431 0.00033869 0.71594 0.00044549 1.2602 0.00078418 622.24715948621 98.354 2.0451 98.354 97.401 99.446 0 172 58 4 0 0 0 0.46434 2 19402 19402;19447 24.991 1.2156 1 16829000 + 45469 18314 30241 30261 44785;44786 44785 -0.13263029260247094 TESTDGHYGNY 11 Unmodified _TESTDGHYGNY_ 0 0 0 REV__ENST00000392582.2_1_2:172930337-172937166:+|nuORF REV__ENST00000392582.2_1_2:172930337-172937166:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7777099609375 2 622.246731 1242.47891 0.88122 0.00054833 0.15001 9.3344E-05 1.0312 0.00064168 622.2467629287659 103.16 2.3082 98.976 97.855 100.16 -4.1861 197 66 4 0 0 0 0.43824 1 20364 20364 29.841 5.82 1 24200000 + 45470 18314 30241 30261 44787 44787 -0.13263029260247094 TESTDGHYGNY 11 Unmodified _TESTDGHYGNY_ 0 0 0 REV__ENST00000392582.2_1_2:172930337-172937166:+|nuORF REV__ENST00000392582.2_1_2:172930337-172937166:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7816162109375 2 622.246731 1242.47891 0.48109 0.00029936 0.71186 0.00044295 1.193 0.00074231 622.2470983646757 103.29 2.4689 98.945 97.745 100.21 -4.346 225 70 4 0 0 0 0.43824 2 19710 19710;19973 29.841 5.82 1 34757000 + 45471 18314 30241 30261 44788;44789 44788 -0.13263029260247094 TESTDGHYGNY 11 Unmodified _TESTDGHYGNY_ 0 0 0 REV__ENST00000392582.2_1_2:172930337-172937166:+|nuORF REV__ENST00000392582.2_1_2:172930337-172937166:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7764282226562 2 622.246731 1242.47891 0.76789 0.00047782 0.38278 0.00023819 1.1507 0.000716 622.2469512613121 102.93 2.3603 98.912 97.8 100.16 -4.0212 204 66 4 0 0 0 0.44778 1 19738 19738 31.268 7.2478 1 26001000 + 45472 18314 30241 30261 44790 44790 -0.13263029260247094 TESTSLPHG 9 Unmodified _TESTSLPHG_ 0 0 0 REV__ENST00000580483.5_1_18:10525983-10526091:+|nuORF REV__ENST00000580483.5_1_18:10525983-10526091:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25604248046875 2 464.722164 927.429775 0.080907 3.7599E-05 -0.84272 -0.00039163 -0.76182 -0.00035403 464.7217326837562 61.909 0.98336 58.539 58.185 59.168 -3.3694 48 27 2 0 0 0 0.44262 1 11495 11495 23.148 1.4018 1 3018400 + 45473 23237 30242 30262 44791 44791 -0.036842727585622015 TESTWHAVY 9 Unmodified _TESTWHAVY_ 0 0 0 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7763061523438 2 547.251089 1092.48762 0.44336 0.00024263 -2.3673 -0.0012955 -1.924 -0.0010529 547.2497799874936 34.4 0.55672 32.184 31.812 32.369 -2.2158 22 15 2 0 0 0 0.86532 1 6059 6059 4.756 1.1595 1 852430 + 45474 12964 30243 30263 44792 44792 -0.054920108331543815 TESVDKFIR 9 Unmodified _TESVDKFIR_ 0 0 0 REV__ENST00000460781.1_1_2:118709102-118709207:-|nuORF REV__ENST00000460781.1_1_2:118709102-118709207:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7909545898438 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 149.04 1 144.34 143.84 144.84 -4.7095 0 0 0 0.23508 1 29599 29599 13.042 3.6593 1 + 45475 21882 30244 30264 44793 44793 0.03372824126358864 TESVMINGKY 10 Unmodified _TESVMINGKY_ 0 0 0 SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant;nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1;SFMBT1|p.A664Pfs*50|1|0.1|ENSG00000163935|chr3:52907651-52907651|T/-|frameshift_variant SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.213134765625 3 381.190113 1140.54851 NaN NaN NaN NaN NaN NaN NaN 63.305 1 60.048 59.548 60.548 -3.2567 0 0 0 0.22588 1 11876 11876 6.1918 1.2948 1 45476 5485 30245 30265 44794 44794 -0.01614241845209108 TESWTGLY 8 Unmodified _TESWTGLY_ 0 0 0 ENST00000457107.5_1_6:29760033-29761240:+|nuORF ENST00000457107.5_1_6:29760033-29761240:+|nuORF ENST00000457107.5_1_6:29760033-29761240:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7215881347656 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 111.27 1 106.85 106.35 107.35 -4.4231 0 0 0 0.21486 1 21922 21922 10.183 0 1 45477 10034 30246 30266 44795 44795 -0.05078487127491371 TESYMMSI 8 Unmodified _TESYMMSI_ 0 0 0 REV__tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1 REV__tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2550048828125 2 481.203904 960.393255 NaN NaN NaN NaN NaN NaN NaN 92.277 1 88.183 87.683 88.683 -4.0946 0 0 0 0.21486 1 17579 17579 9.3474 0 1 + 45478 25241 30247 30267 44796 44796 -0.08852608971130849 TETASIKLV 9 Unmodified _TETASIKLV_ 0 0 0 REV__ENSG00000188738|ENST00000424728|FSIP2 REV__ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7830810546875 2 481.281857 960.549162 0.032904 1.5836E-05 0.24236 0.00011664 0.27526 0.00013248 481.2818768342257 82.743 0.63844 79.135 78.775 79.413 -3.6079 41 17 3 0 0 0 0.46598 1 16136 16136 0.20686 0 1 2621100 + 45479 19166 30248 30268 44797 44797 0.06730920866141332 TETASPLFL 9 Unmodified _TETASPLFL_ 0 0 0 ENST00000454792.2_1_12:56321013-56321545:-|nuORF ENST00000454792.2_1_12:56321013-56321545:-|nuORF ENST00000454792.2_1_12:56321013-56321545:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2638854980469 2 489.760758 977.506963 0.24624 0.0001206 0.62915 0.00030813 0.87539 0.00042873 489.7608411250966 62.5 0.62773 59.131 58.816 59.443 -3.3694 28 17 2 0 0 0 0.37087 1 11631 11631 0.40827 0 1 1750300 45480 10016 30249 30269 44798 44798 0.01730945457757116 TETDWTEA 8 Unmodified _TETDWTEA_ 0 0 0 REV__ENST00000458236.1_1_6:29706493-29716746:-|nuORF REV__ENST00000458236.1_1_6:29706493-29716746:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.1544494628906 3 318.134662 951.382156 -0.47847 -0.00015222 1.7512 0.00055712 1.2727 0.0004049 318.13561347112164 96.919 0.63213 96.919 96.664 97.296 0 34 17 3 0 0 0 8448 1 19004 19004 10.074 1.9184 1 2844500 + 45481 21863 30250 30270 44799 44799 -0.09547971749418593 TETDWTEA 8 Unmodified _TETDWTEA_ 0 0 0 REV__ENST00000458236.1_1_6:29706493-29716746:-|nuORF REV__ENST00000458236.1_1_6:29706493-29716746:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 318.134662 951.382156 -0.47847 -0.00015222 1.7512 0.00055712 1.2727 0.0004049 318.13561347112164 96.919 0.63213 96.919 96.664 97.296 0 -0.13093 0.00091143 NaN 10.074 34 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2844500 + 45482 21863 30250 30270 -0.09547971749418593 TETDWTEA 8 Unmodified _TETDWTEA_ 0 0 0 REV__ENST00000458236.1_1_6:29706493-29716746:-|nuORF REV__ENST00000458236.1_1_6:29706493-29716746:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 318.134662 951.382156 0.32003 0.00010181 -0.65499 -0.00020837 -0.33496 -0.00010656 318.13527325612773 101.5 0.54443 97.181 96.82 97.364 -4.3208 0.13093 -0.001385 NaN 10.074 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1189000 + 45483 21863 30250 30270 -0.09547971749418593 TETEMFEKY 9 Unmodified _TETEMFEKY_ 0 0 0 ENSG00000103021|ENST00000219299|CCDC113;nc|ENSG00000103021|Q9H0I3-2|CFAP263 ENSG00000103021|ENST00000219299|CCDC113 ENSG00000103021|ENST00000219299|CCDC113 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.259521484375 2 589.257722 1176.50089 0.38402 0.00022629 -0.94165 -0.00055487 -0.55763 -0.00032859 589.2576682825561 85.257 0.66189 81.593 81.265 81.927 -3.6641 39 18 3 0 0 0 0.10083 2 16648 16646;16648 55.503 39.656 1 4668500 45484 2159 30251 30271 44800;44801 44801 -0.08029940836058813 TETEMFEKY 9 Unmodified _TETEMFEKY_ 0 0 0 ENSG00000103021|ENST00000219299|CCDC113;nc|ENSG00000103021|Q9H0I3-2|CFAP263 ENSG00000103021|ENST00000219299|CCDC113 ENSG00000103021|ENST00000219299|CCDC113 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2575073242188 2 589.257722 1176.50089 0.6198 0.00036522 -3.1487 -0.0018554 -2.5289 -0.0014902 589.2574706715853 85.466 0.62899 81.557 81.217 81.846 -3.9093 43 17 3 0 0 0 0.086396 1 16250 16250 60.074 36.053 1 3413000 45485 2159 30251 30271 44802 44802 -0.08029940836058813 TETEMFEKY 9 Unmodified _TETEMFEKY_ 0 0 0 ENSG00000103021|ENST00000219299|CCDC113;nc|ENSG00000103021|Q9H0I3-2|CFAP263 ENSG00000103021|ENST00000219299|CCDC113 ENSG00000103021|ENST00000219299|CCDC113 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.257080078125 2 589.257722 1176.50089 0.030575 1.8017E-05 -1.2219 -0.00072002 -1.1913 -0.000702 589.2578598024223 85.241 0.82196 81.53 81.015 81.837 -3.7117 48 23 3 0 0 0 0.086396 3 16284 16243;16247;16284 60.074 36.053 1 3102100 45486 2159 30251 30271 44803;44804;44805 44805 -0.08029940836058813 TETGGAAG 8 Unmodified _TETGGAAG_ 0 0 0 ENST00000527696.5_1_11:209264-209561:+|nuORF;ENST00000532373.1_1_11:208854-209561:+|nuORF ENST00000527696.5_1_11:209264-209561:+|nuORF ENST00000527696.5_1_11:209264-209561:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.00628662109375 2 332.150843 662.287133 NaN NaN NaN NaN NaN NaN NaN 82.374 1 82.374 81.874 82.874 0 0 0 0 0.21486 1 16048 16048 2.5775 0 1 45487 10929 30252 30272 44806 44806 -0.05751860429950284 TETHSGNAY 9 Unmodified _TETHSGNAY_ 0 0 0 REV__PRSS23|p.R96H|1|0.08|ENSG00000150687|chr11:86807930-86807930|G/A|missense_variant REV__PRSS23|p.R96H|1|0.08|ENSG00000150687|chr11:86807930-86807930|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2737731933594 2 490.209421 978.404288 -0.11475 -5.6254E-05 0.030317 1.4862E-05 -0.084438 -4.1392E-05 490.2093935976565 59.646 0.63373 59.646 59.396 60.029 0 37 17 3 0 0 0 0.74655 1 11395 11395 21.747 19.169 1 5507500 + 45488 24517 30253 30273 44807 44807 -0.08577747280992298 TETHSGNAY 9 Unmodified _TETHSGNAY_ 0 0 0 REV__PRSS23|p.R96H|1|0.08|ENSG00000150687|chr11:86807930-86807930|G/A|missense_variant REV__PRSS23|p.R96H|1|0.08|ENSG00000150687|chr11:86807930-86807930|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25738525390625 2 490.209421 978.404288 0.17745 8.699E-05 -0.83872 -0.00041115 -0.66126 -0.00032416 490.20894985005174 63.007 0.61487 60.01 59.671 60.285 -2.9975 42 17 3 0 0 0 0.74655 1 12196 12196 15.847 9.124 1 4068200 + 45489 24517 30253 30273 44808 44808 -0.08577747280992298 TETHSGNAY 9 Unmodified _TETHSGNAY_ 0 0 0 REV__PRSS23|p.R96H|1|0.08|ENSG00000150687|chr11:86807930-86807930|G/A|missense_variant REV__PRSS23|p.R96H|1|0.08|ENSG00000150687|chr11:86807930-86807930|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25677490234375 2 490.209421 978.404288 0.26136 0.00012812 -1.1291 -0.00055347 -0.86769 -0.00042535 490.2089430818722 63.442 0.63406 60.027 59.72 60.354 -3.4158 37 17 3 0 0 0 0.74655 1 11885 11885 10.824 4.1008 1 3921100 + 45490 24517 30253 30273 44809 44809 -0.08577747280992298 TETHSGNAY 9 Unmodified _TETHSGNAY_ 0 0 0 REV__PRSS23|p.R96H|1|0.08|ENSG00000150687|chr11:86807930-86807930|G/A|missense_variant REV__PRSS23|p.R96H|1|0.08|ENSG00000150687|chr11:86807930-86807930|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2657165527344 2 490.209421 978.404288 0.0074884 3.6709E-06 -0.85349 -0.00041839 -0.84601 -0.00041472 490.2089213386238 63.226 0.62011 59.969 59.709 60.329 -3.2567 43 17 3 0 0 0 0.74655 1 11853 11853 21.747 21.747 1 3397500 + 45491 24517 30253 30273 44810 44810 -0.08577747280992298 TETIAKLV 8 Unmodified _TETIAKLV_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.216064453125 2 437.765843 873.517133 -0.0029176 -1.2772E-06 -0.1991 -8.7159E-05 -0.20202 -8.8437E-05 437.7656739170265 90.878 0.56442 90.878 90.58 91.144 0 20 15 2 0 0 0 0.44459 1 17745 17745 48.346 14.243 1 1149000 45492 7447 30254 30274 44811 44811 0.07531553182991502 TETIIDPGHV 10 Unmodified _TETIIDPGHV_ 0 0 0 REV__ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant REV__ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2648315429688 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 64.521 1 61.523 61.023 62.023 -2.9975 0 0 0 2.8426 1 12480 12480 1.9275 0 1 + 45493 25590 30255 30275 44812 44812 0.008088313724329055 TETISSLPA 9 Unmodified _TETISSLPA_ 0 0 0 nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A nc|ENSG00000169894|Q02505-2|MUC3A nc|ENSG00000169894|Q02505-2|MUC3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.232421875 2 459.742565 917.470577 -0.47885 -0.00022015 1.6709 0.00076821 1.1921 0.00054806 459.7435128696365 37.21 0.51745 34.741 34.5 35.017 -2.4688 24 14 2 0 0 0 0.67531 1 6919 6919 7.9102 0.62092 1 1155400 45494 6017 30256 30276 44813 44813 0.008540685610455512 TETKSMIF 8 Unmodified _TETKSMIF_ 0 0 0 STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;ENST00000467011.5_1_4:27022655-27024615:+|nuORF STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7410888671875 2 478.741511 955.468469 NaN NaN NaN NaN NaN NaN NaN 88.36 1 84.61 84.11 85.11 -3.7501 0 0 0 0.19342 1 16911 16911 26.884 2.2098 1 45495 2539 30257 30277 44814 44814 -0.01104683448409105 TETKTITY 8 Unmodified _TETKTITY_ 0 0 0 EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant;ENST00000462032.1_1_1:29424324-29436027:+|nuORF;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;EPB41|p.K805Rfs*3|1|0.19|ENSG00000159023|chr1:29109433-29109433|C/-|frameshift_variant;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant;ENST00000452150.6_1_6:131179278-131188835:-|nuORF ENST00000452150.6_1_6:131179278-131188835:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7242431640625 2 478.75039 955.486227 NaN NaN NaN NaN NaN NaN NaN 38.774 1 36.225 35.725 36.725 -2.5491 0 0 0 0.17841 1 7197 7197 32.305 3.8186 1 45496 1601;1638 30258 30278 44815 44815 0.006703550780912337 TETKTITY 8 Unmodified _TETKTITY_ 0 0 0 EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant;ENST00000462032.1_1_1:29424324-29436027:+|nuORF;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;EPB41|p.K805Rfs*3|1|0.19|ENSG00000159023|chr1:29109433-29109433|C/-|frameshift_variant;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 EPB41L3|p.S989L|1|0.22|ENSG00000082397|chr18:5396208-5396208|G/A|missense_variant;ENST00000452150.6_1_6:131179278-131188835:-|nuORF ENST00000452150.6_1_6:131179278-131188835:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72161865234375 2 478.75039 955.486227 NaN NaN NaN NaN NaN NaN NaN 38.712 1 36.271 35.771 36.771 -2.4419 0 0 0 0.027494 1 6898 6898 60.074 12.325 1 45497 1601;1638 30258 30278 44816 44816 0.006703550780912337 TETLQAKE 8 Unmodified _TETLQAKE_ 0 0 0 REV__ENST00000490303.5_1_3:182583321-182631816:+|nuORF REV__ENST00000490303.5_1_3:182583321-182631816:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2399597167969 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 21.175 1 21.175 20.675 21.675 0 0 0 0 0.23487 1 3535 3535 0.12286 0 1 + 45498 14128 30259 30279 44817 44817 0.0033318441827532297 TETQRTLA 8 Unmodified _TETQRTLA_ 0 0 0 ENST00000302017.3_1_7:149461591-149461777:-|nuORF ENST00000302017.3_1_7:149461591-149461777:-|nuORF ENST00000302017.3_1_7:149461591-149461777:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2452697753906 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 78.259 1 74.493 73.993 74.993 -3.7664 0 0 0 0.20896 1 14839 14839 18.135 4.6271 1 45499 8568 30260 30280 44818 44818 0.014560065124214816 TETRLQFDETA 11 Unmodified _TETRLQFDETA_ 0 0 0 ENSG00000128408|ENST00000614167|RIBC2 ENSG00000128408|ENST00000614167|RIBC2 ENSG00000128408|ENST00000614167|RIBC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22161865234375 3 437.545613 1309.61501 0.28914 0.00012651 0.85286 0.00037316 1.142 0.00049968 437.54593235398266 32.196 0.65992 30.047 29.759 30.419 -2.1483 56 18 4 0 0 0 0.80759 1 5626 5626 2.6312 0.19645 1 7513100 45500 3522 30261 30281 44819 44819 -0.027413347496121787 TETSGESY 8 Unmodified _TETSGESY_ 0 0 0 tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1 tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1 tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2354736328125 2 437.177255 872.339957 NaN NaN NaN NaN NaN NaN NaN 70.851 1 67.271 66.771 67.771 -3.5798 0 0 0 0.21486 1 13356 13356 8.5933 2.2392 1 45501 25930 30262 30282 44820 44820 -0.10131947157799459 TETSGESY 8 Unmodified _TETSGESY_ 0 0 0 tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1 tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1 tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21575927734375 2 437.177255 872.339957 NaN NaN NaN NaN NaN NaN NaN 82.224 1 78.35 77.85 78.85 -3.8736 0 0 0 0.21486 1 15620 15620 10.183 0.83596 1 45502 25930 30262 30282 44821 44821 -0.10131947157799459 TETSGVHGDSP 11 Unmodified _TETSGVHGDSP_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;SVIL|p.Q209Rfs*10|1|0.09|ENSG00000197321|chr10:29550799-29550800|GA/-|frameshift_variant;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7877807617188 2 543.738542 1085.46253 NaN NaN NaN NaN NaN NaN NaN 53.792 1 53.792 53.292 54.292 0 0 0 0 0.08514 1 10248 10248 38.176 7.9508 1 45503 7353 30263 30283 44822 44822 -0.07678110426354579 TETSHNQY 8 Unmodified _TETSHNQY_ 0 0 0 REV__nc|ENSG00000157193|Q14114-4|LRP8 REV__nc|ENSG00000157193|Q14114-4|LRP8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2747802734375 2 490.209421 978.404288 -0.10232 -5.0158E-05 -0.42503 -0.00020836 -0.52735 -0.00025851 490.20893001178763 69.029 0.46168 69.029 68.858 69.32 0 14 12 2 0 0 0 0.99494 1 13405 13405 8.5933 6.2905 1 1554200 + 45504 17287 30264 30284 44823 44823 -0.08577747280992298 TETVFNRVL 9 Unmodified _TETVFNRVL_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 112.09 1 112.09 111.59 112.59 0 0 0 0 0.23508 1 22051 22051 2.7352 0 1 45505 2020 30265 30285 44824 44824 0.0461712798901317 TETVFNRVL 9 Unmodified _TETVFNRVL_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 76.994 1 73.227 72.727 73.727 -3.7664 0 0 0 0.23508 1 14584 14584 4.897 0 1 45506 2020 30265 30285 44825 44825 0.0461712798901317 TETVFNRVL 9 Unmodified _TETVFNRVL_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013244628906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 76.951 1 73.292 72.792 73.792 -3.6588 0 0 0 0.23508 1 14648 14648 4.897 0 1 45507 2020 30265 30285 44826 44826 0.0461712798901317 TETVFNRVL 9 Unmodified _TETVFNRVL_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2012939453125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 125.64 1 120.99 120.49 121.49 -4.6495 0 0 0 0.23508 1 24176 24176 2.7352 0 1 45508 2020 30265 30285 44827 44827 0.0461712798901317 TETVTKSY 8 Unmodified _TETVTKSY_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.23870849609375 2 464.73474 927.454927 0.13042 6.0609E-05 0.25763 0.00011973 0.38804 0.00018034 464.7347175918162 21.464 0.3349 21.464 21.231 21.566 0 32 9 4 0 0 0 0.35341 2 3567 3563;3567 34.402 5.9149 1 5238700 45509 367 30266 30286 44828;44829 44829 -0.011702179559961223 TETVTKSY 8 Unmodified _TETVTKSY_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2381286621094 2 464.73474 927.454927 0.65761 0.00030561 -0.39752 -0.00018474 0.26008 0.00012087 464.73458746967225 22.943 0.34168 21.39 21.132 21.474 -1.5532 22 9 3 0 0 0 0.45962 2 3913 3913;3920 29.841 25.364 1 5016200 45510 367 30266 30286 44830;44831 44830 -0.011702179559961223 TETVTKSY 8 Unmodified _TETVTKSY_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.23736572265625 2 464.73474 927.454927 -0.12992 -6.0378E-05 0.38355 0.00017825 0.25363 0.00011787 464.7349023553455 22.875 0.35348 21.422 21.154 21.507 -1.4535 31 9 4 0 0 0 0.27251 1 3636 3636 38.176 12.776 1 4429400 45511 367 30266 30286 44832 44832 -0.011702179559961223 TETVTKSY 8 Unmodified _TETVTKSY_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2373046875 2 464.73474 927.454927 -0.46944 -0.00021816 0.61594 0.00028625 0.1465 6.8085E-05 464.7349539704391 23.105 0.33457 21.317 21.091 21.426 -1.7886 22 9 3 0 0 0 0.12741 1 3687 3687 57.722 25.416 1 3265500 45512 367 30266 30286 44833 44833 -0.011702179559961223 TEVAPPPPP 9 Unmodified _TEVAPPPPP_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7691345214844 2 452.742368 903.470183 -0.044141 -1.9985E-05 0.13151 5.9538E-05 0.087365 3.9554E-05 452.7423725819779 58.263 2.4878 58.263 57.614 60.102 0 206 70 4 0 0 0 0.11447 1 11339 11339 50.855 0 1 74661000 45513 514 30267 30287 44834 44834 0.014586936318551125 TEVAPPPPP 9 Unmodified _TEVAPPPPP_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75640869140625 2 452.742368 903.470183 -0.069736 -3.1572E-05 0.11358 5.1422E-05 0.043843 1.985E-05 452.74235996266907 61.389 3.2874 58.427 57.968 61.256 -2.9614 260 94 6 0 0 0 0.022915 1 11860 11860 89.427 18.711 1 113280000 45514 514 30267 30287 44835 44835 0.014586936318551125 TEVAPPPPP 9 Unmodified _TEVAPPPPP_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 452.742368 903.470183 0.074767 3.385E-05 0.025945 1.1746E-05 0.10071 4.5597E-05 452.7423381671782 61.885 3.3464 58.516 57.967 61.313 -3.3694 0.083419 -2.4098E-05 NaN 89.427 259 94 5 NaN NaN NaN NaN 0 NaN NaN 0 94365000 45515 514 30267 30287 0.014586936318551125 TEVAPPPPP 9 Unmodified _TEVAPPPPP_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 452.742368 903.470183 0.15574 7.0512E-05 0.0042153 1.9085E-06 0.15996 7.2421E-05 452.7423199929468 61.763 3.6723 58.524 57.892 61.565 -3.2395 0.091059 -4.3773E-05 NaN 89.427 265 105 5 NaN NaN NaN NaN 0 NaN NaN 0 78936000 45516 514 30267 30287 0.014586936318551125 TEVEVPEL 8 Unmodified _TEVEVPEL_ 0 0 0 nc|ENSG00000117640|Q9H019-3|MTFR1L;ENSG00000117640|ENST00000374303|MTFR1L;MTFR1L|p.E191D|1|0.42|ENSG00000117640|chr1:25829630-25829630|G/T|missense_variant nc|ENSG00000117640|Q9H019-3|MTFR1L nc|ENSG00000117640|Q9H019-3|MTFR1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2384033203125 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 126 1 126 125.5 126.5 0 0 0 0 0.21039 1 24861 24861 16.942 3.4344 1 45517 2996 30268 30288 44836 44836 -0.0009733381323258072 TEVEVPEL 8 Unmodified _TEVEVPEL_ 0 0 0 nc|ENSG00000117640|Q9H019-3|MTFR1L;ENSG00000117640|ENST00000374303|MTFR1L;MTFR1L|p.E191D|1|0.42|ENSG00000117640|chr1:25829630-25829630|G/T|missense_variant nc|ENSG00000117640|Q9H019-3|MTFR1L nc|ENSG00000117640|Q9H019-3|MTFR1L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2372741699219 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 130.15 1 125.52 125.02 126.02 -4.6359 0 0 0 0.16002 1 25651 25651 36.044 7.5574 1 45518 2996 30268 30288 44837 44837 -0.0009733381323258072 TEVGLHEM 8 Unmodified _TEVGLHEM_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2383117675781 2 458.21566 914.416767 0.0072684 3.3305E-06 -0.29098 -0.00013333 -0.28371 -0.00013 458.2155812151515 57.642 0.45024 57.642 57.41 57.86 0 17 12 2 0 0 0 0.58903 1 11009 11009 30.225 5.5509 1 1203700 45519 3982;10375 30269 30289 44838 44838 -0.04386427142298999 TEVGLHEM 8 Unmodified _TEVGLHEM_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.223388671875 2 458.21566 914.416767 -0.099138 -4.5426E-05 -0.16111 -7.3823E-05 -0.26025 -0.00011925 458.2155532086612 60.427 0.72165 57.494 57.204 57.926 -2.9333 29 20 2 0 0 0 0.49114 1 11669 11669 28.487 9.0478 1 1663200 45520 3982;10375 30269 30289 44839 44839 -0.04386427142298999 TEVGLHEM 8 Unmodified _TEVGLHEM_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-5|FLNB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23846435546875 2 458.21566 914.416767 0.16185 7.4162E-05 -0.42604 -0.00019522 -0.26419 -0.00012105 458.21541805824637 60.736 0.52693 57.512 57.312 57.839 -3.2237 24 14 2 0 0 0 0.41341 1 11360 11360 42.095 22.838 1 1093500 45521 3982;10375 30269 30289 44840 44840 -0.04386427142298999 TEVHGERA 8 Unmodified _TEVHGERA_ 0 0 0 REV__nc|ENSG00000029534|P16157-14|ANK1 REV__nc|ENSG00000029534|P16157-14|ANK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 450.1128234863281 2 449.722498 897.430444 -1.615 -0.0007263 0.70909 0.00031889 -0.90591 -0.00040741 449.72290550424896 15.91 0.13774 14.557 14.443 14.581 -1.3534 6 3 2 0 0 0 1.0254 1 2218 2218 5.2307 0 1 169620 + 45522 23933 30270 30290 44841 44841 -0.022374333188622586 TEVHGERA 8 Unmodified _TEVHGERA_ 0 0 0 REV__nc|ENSG00000029534|P16157-14|ANK1 REV__nc|ENSG00000029534|P16157-14|ANK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 449.722498 897.430444 0.12467 5.6066E-05 -0.021858 -9.8299E-06 0.10281 4.6236E-05 449.72245537939085 14.933 0.28052 14.933 14.807 15.087 0 0.23591 -6.2248E-05 NaN 5.2307 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1194400 + 45523 23933 30270 30290 -0.022374333188622586 TEVHGERA 8 Unmodified _TEVHGERA_ 0 0 0 REV__nc|ENSG00000029534|P16157-14|ANK1 REV__nc|ENSG00000029534|P16157-14|ANK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 449.722498 897.430444 -0.61181 -0.00027514 0.078242 3.5187E-05 -0.53357 -0.00023996 449.7224697446989 15.852 0.17685 14.636 14.514 14.691 -1.2159 -0.060437 2.7786E-05 NaN 5.2307 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 825450 + 45524 23933 30270 30290 -0.022374333188622586 TEVHGERA 8 Unmodified _TEVHGERA_ 0 0 0 REV__nc|ENSG00000029534|P16157-14|ANK1 REV__nc|ENSG00000029534|P16157-14|ANK1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 449.722498 897.430444 -0.59163 -0.00026607 -0.51942 -0.00023359 -1.111 -0.00049966 449.7225419127204 15.883 0.13898 14.661 14.572 14.711 -1.2219 -0.035656 -0.00050978 NaN 5.2307 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 298120 + 45525 23933 30270 30290 -0.022374333188622586 TEVHIRPK 8 Unmodified _TEVHIRPK_ 0 0 0 nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3 nc|ENSG00000002549|P28838-2|LAP3 nc|ENSG00000002549|P28838-2|LAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2641296386719 2 490.287808 978.561064 -0.019265 -9.4455E-06 -0.9271 -0.00045454 -0.94636 -0.00046399 490.28714880805177 71.387 0.45816 68.138 67.886 68.345 -3.2492 22 12 2 0 0 0 0.70613 1 13849 13849 13.508 2.3934 1 1987100 45526 962 30271 30291 44842 44842 0.07092582399991443 TEVHIRPK 8 Unmodified _TEVHIRPK_ 0 0 0 nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3 nc|ENSG00000002549|P28838-2|LAP3 nc|ENSG00000002549|P28838-2|LAP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2756042480469 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 71.295 1 67.716 67.216 68.216 -3.5798 0 0 0 0.21452 1 13443 13443 13.508 0 1 45527 962 30271 30291 44843 44843 0.07092582399991443 TEVHIRPK 8 Unmodified _TEVHIRPK_ 0 0 0 nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3 nc|ENSG00000002549|P28838-2|LAP3 nc|ENSG00000002549|P28838-2|LAP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26483154296875 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 71.211 1 67.744 67.244 68.244 -3.467 0 0 0 0.2074 1 13494 13494 19.439 4.8573 1 45528 962 30271 30291 44844 44844 0.07092582399991443 TEVHVEEL 8 Unmodified _TEVHVEEL_ 0 0 0 nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131 nc|ENSG00000172262|P52739-2|ZNF131 nc|ENSG00000172262|P52739-2|ZNF131 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73187255859375 2 478.24019 954.465826 -0.19804 -9.4713E-05 0.70929 0.00033921 0.51124 0.0002445 478.2406092578945 104.55 0.13655 100.33 100.27 100.4 -4.2183 5 3 2 0 0 0 0.58903 1 20569 20569 30.225 3.8835 1 442460 45529 6203 30272 30292 44845 44845 -0.013228155817046172 TEVHVEELH 9 Unmodified _TEVHVEELH_ 0 0 0 nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131 nc|ENSG00000172262|P52739-2|ZNF131 nc|ENSG00000172262|P52739-2|ZNF131 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7846069335938 2 546.769645 1091.52474 -0.72986 -0.00039907 0.1596 8.7267E-05 -0.57026 -0.0003118 546.7697253918928 20.783 0.76003 19.062 18.873 19.633 -1.7211 79 21 5 0 0 0 0.73309 1 3179 3179 4.756 0 1 91853000 45530 6203 30273 30293 44846 44846 -0.017363392873676275 TEVIVPHL 8 Unmodified _TEVIVPHL_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7537536621094 2 454.26601 906.517468 0.24847 0.00011287 -0.13438 -6.1046E-05 0.11409 5.1827E-05 454.26583413240377 121.16 0.79448 121.16 120.78 121.58 0 35 21 2 0 0 0 0.16877 1 23880 23880 75.128 38.662 1 2961300 45531 1162 30274 30294 44847 44847 0.06046972902856851 TEVIVPHL 8 Unmodified _TEVIVPHL_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75360107421875 2 454.26601 906.517468 0.0331 1.5036E-05 0.042934 1.9503E-05 0.076034 3.454E-05 454.265980250943 125.34 0.81939 120.74 120.19 121.01 -4.5984 50 22 3 0 0 0 0.24322 1 24703 24703 52.693 31.822 1 3270900 45532 1162 30274 30294 44848 44848 0.06046972902856851 TEVIVPHL 8 Unmodified _TEVIVPHL_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 454.26601 906.517468 0.27595 0.00012535 -0.27764 -0.00012612 -0.0016934 -7.6925E-07 454.26580936607127 125.51 0.80492 120.74 120.3 121.11 -4.7681 -0.0034669 -0.00010487 NaN 52.693 46 22 3 NaN NaN NaN NaN 0 NaN NaN 0 2693800 45533 1162 30274 30294 0.06046972902856851 TEVIVPHL 8 Unmodified _TEVIVPHL_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 454.26601 906.517468 0.18386 8.352E-05 -0.22072 -0.00010027 -0.036867 -1.6747E-05 454.26594754279955 125.39 0.91137 120.74 120.28 121.19 -4.6495 0.0023686 -5.3156E-05 NaN 52.693 50 25 3 NaN NaN NaN NaN 0 NaN NaN 0 2877000 45534 1162 30274 30294 0.06046972902856851 TEVKKREELDL 11 Unmodified _TEVKKREELDL_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7537536621094 3 453.920791 1358.74054 NaN NaN NaN NaN NaN NaN NaN 121.15 1 121.15 120.65 121.65 0 0 0 0 0.23452 1 23880 23880 4.7159 0.30977 1 + 45535 14286 30275 30295 44849 44849 0.07552377106617314 TEVKRFIS 8 Unmodified _TEVKRFIS_ 0 0 0 REV__ENST00000467224.5_1_3:25761125-25775431:-|nuORF REV__ENST00000467224.5_1_3:25761125-25775431:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2567138671875 2 490.282192 978.549831 0.16635 8.1556E-05 -0.17223 -8.4444E-05 -0.0058887 -2.8871E-06 490.28205087120296 115.97 0.65967 111.49 111.17 111.83 -4.486 33 18 2 0 0 0 0.64227 1 22804 22804 19.439 0 1 3598300 + 45536 17052 30276 30296 44850 44850 0.05969760305856653 TEVKRFIS 8 Unmodified _TEVKRFIS_ 0 0 0 REV__ENST00000467224.5_1_3:25761125-25775431:-|nuORF REV__ENST00000467224.5_1_3:25761125-25775431:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2600402832031 2 490.282192 978.549831 0.37078 0.00018179 -0.56423 -0.00027663 -0.19345 -9.4843E-05 490.28201553139513 116.09 0.61252 111.51 111.22 111.84 -4.5815 38 17 3 0 0 0 0.64227 2 22246 22246;22260 19.439 0 1 2477100 + 45537 17052 30276 30296 44851;44852 44851 0.05969760305856653 TEVKSVEM 8 Unmodified _TEVKSVEM_ 0 0 0 ENST00000547505.2_1_12:44054314-44054545:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2 ENST00000547505.2_1_12:44054314-44054545:+|nuORF ENST00000547505.2_1_12:44054314-44054545:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53271484375 2 461.731143 921.447733 0.30689 0.0001417 -0.19692 -9.0924E-05 0.10997 5.0776E-05 461.7311209802954 38.796 0.95013 38.796 38.388 39.338 0 86 26 5 0 0 0 0.11043 1 7208 7208 51.264 32.65 1 91394000 45538 2049 30277 30297 44853 44853 -0.01613273828070305 TEVKSVEM 8 Unmodified _TEVKSVEM_ 0 0 0 ENST00000547505.2_1_12:44054314-44054545:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2 ENST00000547505.2_1_12:44054314-44054545:+|nuORF ENST00000547505.2_1_12:44054314-44054545:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5249328613281 2 461.731143 921.447733 -0.082851 -3.8255E-05 0.20099 9.2806E-05 0.11814 5.4551E-05 461.7312902956722 41.148 1.2243 38.608 38.242 39.466 -2.5398 94 34 5 0 0 0 0.05075 1 7382 7382 118.07 56.711 1 87545000 45539 2049 30277 30297 44854 44854 -0.01613273828070305 TEVKSVEM 8 Unmodified _TEVKSVEM_ 0 0 0 ENST00000547505.2_1_12:44054314-44054545:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2 ENST00000547505.2_1_12:44054314-44054545:+|nuORF ENST00000547505.2_1_12:44054314-44054545:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 461.731143 921.447733 -0.27398 -0.00012651 0.44864 0.00020715 0.17466 8.0644E-05 461.73139231407134 41.227 0.89685 38.592 38.257 39.153 -2.6348 -0.067389 0.00026551 NaN 118.07 78 25 5 NaN NaN NaN NaN 0 NaN NaN 0 100570000 45540 2049 30277 30297 -0.01613273828070305 TEVKSVEM 8 Unmodified _TEVKSVEM_ 0 0 0 ENST00000547505.2_1_12:44054314-44054545:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2 ENST00000547505.2_1_12:44054314-44054545:+|nuORF ENST00000547505.2_1_12:44054314-44054545:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.731143 921.447733 0.061161 2.824E-05 0.044733 2.0655E-05 0.10589 4.8895E-05 461.73123694856855 41.132 1.2236 38.643 38.217 39.441 -2.4896 -0.01685 -0.00010748 NaN 118.07 98 34 5 NaN NaN NaN NaN 0 NaN NaN 0 70151000 45541 2049 30277 30297 -0.01613273828070305 TEVLDLHY 8 Unmodified _TEVLDLHY_ 0 0 0 REV__nc|ENSG00000095203|Q9H329-2|EPB41L4B REV__nc|ENSG00000095203|Q9H329-2|EPB41L4B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 329.9969177246094 3 330.502797 988.486562 -0.052673 -1.7409E-05 -0.0048768 -1.6118E-06 -0.05755 -1.902E-05 330.5027624292609 23.359 0.42485 21.906 21.716 22.14 -1.4535 26 11 4 0 0 0 1.0243 1 3757 3757 3.9444 0 1 1602900 + 45542 14604 30278 30298 44855 44855 -0.008142252020547858 TEVLERLKY 9 Unmodified _TEVLERLKY_ 0 0 0 REV__ENSG00000158480|ENST00000289431|SPATA2 REV__ENSG00000158480|ENST00000289431|SPATA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 384.2074890136719 3 384.220401 1149.63937 NaN NaN NaN NaN NaN NaN NaN 50.452 1 47.571 47.071 48.071 -2.8811 0 0 0 0.23508 1 9572 9572 2.7352 0.23671 1 + 45543 17336 30279 30299 44856 44856 0.07053970194556314 TEVLKACR 8 Unmodified _TEVLKACR_ 0 0 0 nc|ENSG00000183878|O14607|UTY;nc|ENSG00000183878|O14607-4|UTY;ENSG00000183878|ENST00000545955|UTY;nc|ENSG00000183878|O14607-2|UTY;nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-3|UTY nc|ENSG00000183878|O14607|UTY nc|ENSG00000183878|O14607|UTY MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2337341308594 2 460.25512 918.495686 NaN NaN NaN NaN NaN NaN NaN 78.202 1 74.543 74.043 75.043 -3.6588 0 0 0 0.21486 1 14897 14897 9.3474 0 1 45544 6878 30280 30300 44857 44857 0.033178448826333806 TEVLKSRKY 9 Unmodified _TEVLKSRKY_ 0 0 0 ENST00000256707.7_2_2:8870236-8870326:-|nuORF ENST00000256707.7_2_2:8870236-8870326:-|nuORF ENST00000256707.7_2_2:8870236-8870326:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2217102050781 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 33.273 1 31.126 30.626 31.626 -2.1468 0 0 0 0.23508 1 5800 5800 8.1555 3.2585 1 45545 8259 30281 30301 44858 44858 0.08329389914433705 TEVNMARVY 9 Unmodified _TEVNMARVY_ 0 0 0 nc|ENSG00000155959|P61758-2|VBP1;ENSG00000155959|ENST00000286428|VBP1 nc|ENSG00000155959|P61758-2|VBP1 nc|ENSG00000155959|P61758-2|VBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.283203125 2 541.768591 1081.52263 0.19939 0.00010802 3.4733 0.0018817 3.6727 0.0019898 541.770424172877 75.011 0.21473 71.289 71.162 71.377 -3.7227 8 5 2 0 0 0 0.54076 1 14190 14190 20.454 0 1 624480 45546 5072 30282 30302 44859 44859 -0.014870912968262928 TEVPEIDGQV 10 Unmodified _TEVPEIDGQV_ 0 0 0 REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7703857421875 2 543.769311 1085.52407 NaN NaN NaN NaN NaN NaN NaN 166.08 1 161.29 160.79 161.79 -4.7898 0 0 0 0.22576 1 33321 33321 14.838 0 1 + 45547 15062 30283 30303 44860 44860 -0.015271787270876303 TEVPVHPLS 9 Unmodified _TEVPVHPLS_ 0 0 0 nc|ENSG00000205213|Q9BXB1-2|LGR4;ENSG00000205213|ENST00000379214|LGR4;ENST00000527773.1_1_11:27405881-27407050:-|nuORF nc|ENSG00000205213|Q9BXB1-2|LGR4 nc|ENSG00000205213|Q9BXB1-2|LGR4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.267333984375 2 489.766374 977.518196 0.22517 0.00011028 0.30335 0.00014857 0.52852 0.00025885 489.7666087340678 116.7 0.65879 112.22 111.87 112.52 -4.486 33 18 2 0 0 0 0.25702 2 22964 22951;22964 34.102 7.2188 1 2034200 45548 7633 30284 30304 44861;44862 44862 0.028537675519032746 TEVQALNYK 9 Unmodified _TEVQALNYK_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.271484375 2 533.282389 1064.55022 0.42705 0.00022774 0.043554 2.3227E-05 0.4706 0.00025096 533.2827033400284 73.58 0.87363 69.986 69.489 70.362 -3.594 53 24 4 0 0 0 0.30056 1 14012 14012 2.6312 1.4164 1 4877800 45549 5053 30285 30305 44863 44863 0.02053135235018999 TEVQDEPEPH 10 Unmodified _TEVQDEPEPH_ 0 0 0 REV__ENSG00000130287|ENST00000252575|NCAN REV__ENSG00000130287|ENST00000252575|NCAN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.86724853515625 3 394.175409 1179.5044 0.22859 9.0105E-05 -0.67212 -0.00026493 -0.44353 -0.00017483 394.17505203615104 99.785 0.58778 99.785 99.582 100.17 0 20 16 2 0 0 0 1.1258 1 19611 19611 0.013265 0.011884 1 1205900 + 45550 15993 30286 30306 44864 44864 -0.07817554737835053 TEVQDEPEPH 10 Unmodified _TEVQDEPEPH_ 0 0 0 REV__ENSG00000130287|ENST00000252575|NCAN REV__ENSG00000130287|ENST00000252575|NCAN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 394.175409 1179.5044 -0.38358 -0.0001512 -0.18251 -7.1942E-05 -0.56609 -0.00022314 394.1752929955452 104.3 0.6442 100.08 99.791 100.44 -4.2183 0.0626 0.00032859 NaN 0.013265 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2322700 + 45551 15993 30286 30306 -0.07817554737835053 TEVQDEPEPH 10 Unmodified _TEVQDEPEPH_ 0 0 0 REV__ENSG00000130287|ENST00000252575|NCAN REV__ENSG00000130287|ENST00000252575|NCAN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 394.175409 1179.5044 0.15096 5.9504E-05 -0.56029 -0.00022085 -0.40933 -0.00016135 394.1751418775854 104.56 0.72442 100.21 99.798 100.52 -4.346 0.19231 -0.00011814 NaN 0.013265 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1462100 + 45552 15993 30286 30306 -0.07817554737835053 TEVQDEPEPH 10 Unmodified _TEVQDEPEPH_ 0 0 0 REV__ENSG00000130287|ENST00000252575|NCAN REV__ENSG00000130287|ENST00000252575|NCAN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 394.175409 1179.5044 0.1031 4.064E-05 -0.54263 -0.00021389 -0.43952 -0.00017325 394.1751763629929 104.05 0.71642 99.999 99.735 100.45 -4.0543 -0.020409 -9.7258E-05 NaN 0.013265 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1257800 + 45553 15993 30286 30306 -0.07817554737835053 TEVSKTPEA 9 Unmodified _TEVSKTPEA_ 0 0 0 MAGED2|p.A66V|1|0.22|ENSG00000102316|chrX:54809873-54809873|C/T|missense_variant;nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2 MAGED2|p.A66V|1|0.22|ENSG00000102316|chrX:54809873-54809873|C/T|missense_variant MAGED2|p.A66V|1|0.22|ENSG00000102316|chrX:54809873-54809873|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24560546875 2 481.245472 960.476391 -0.063622 -3.0618E-05 0.5599 0.00026945 0.49628 0.00023883 481.2456572671339 17.91 0.39696 17.91 17.693 18.09 0 22 10 3 0 0 0 0.10537 2 2844 2844;2845 38.615 21.999 1 1663100 45554 2125 30287 30307 44865;44866 44865 -0.0054283292729451205 TEVSPGQP 8 Unmodified _TEVSPGQP_ 0 0 0 REV__ENST00000456414.2_1_1:117035720-117035894:-|nuORF REV__ENST00000456414.2_1_1:117035720-117035894:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3582763671875 1 814.394124 813.386848 0.84205 0.00068576 -0.378 -0.00030784 0.46405 0.00037792 814.3936926806284 47.16 0.66916 47.16 46.836 47.505 0 29 18 2 0 0 0 8448 1 8927 8927 0.62683 0 1 1976400 + 45555 21853 30288 30308 44867 44867 -0.027310428159921685 TEVSPKTAE 9 Unmodified _TEVSPKTAE_ 0 0 0 nc|ENSG00000205838|Q6PF05-3|TTC23L;ENSG00000205838|ENST00000505624|TTC23L nc|ENSG00000205838|Q6PF05-3|TTC23L nc|ENSG00000205838|Q6PF05-3|TTC23L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23651123046875 2 481.245472 960.476391 0.11598 5.5813E-05 0.69407 0.00033402 0.81005 0.00038983 481.24571755041194 19.235 0.55682 17.838 17.435 17.992 -1.3966 38 15 3 0 0 0 0.065291 1 3170 3170 72.968 0 1 1587700 45556 12567 30289 30309 44868 44868 -0.0054283292729451205 TEVSPLSVE 9 Unmodified _TEVSPLSVE_ 0 0 0 REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2353515625 2 480.747847 959.481142 0.19023 9.1453E-05 -0.35059 -0.00016855 -0.16036 -7.7094E-05 480.7475154583246 106.76 0.59617 106.76 106.5 107.1 0 26 16 2 0 0 0 0.35443 1 20994 20994 28.487 3.813 1 1754800 + 45557 12988 30290 30310 44869 44869 -0.00021948784524283838 TEVSPLSVE 9 Unmodified _TEVSPLSVE_ 0 0 0 REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2496032714844 2 480.747847 959.481142 -0.26657 -0.00012815 0.18914 9.093E-05 -0.077422 -3.7221E-05 480.7478822860588 111.26 0.75894 106.84 106.48 107.23 -4.4231 52 21 4 0 0 0 0.25702 2 21887 21887;21976 34.102 3.813 1 6300800 + 45558 12988 30290 30310 44870;44871 44870 -0.00021948784524283838 TEVTTYTD 8 Unmodified _TEVTTYTD_ 0 0 0 REV__ENSG00000089101|ENST00000245957|CFAP61 REV__ENSG00000089101|ENST00000245957|CFAP61 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2462158203125 2 465.208555 928.402557 NaN NaN NaN NaN NaN NaN NaN 126.59 1 121.79 121.29 122.29 -4.7958 0 0 0 0.23025 1 24296 24296 0.62683 0 1 + 45559 14521 30291 30311 44872 44872 -0.06450801089613378 TEVVLSKM 8 Unmodified _TEVVLSKM_ 0 0 0 ENST00000552395.5_1_12:54854238-54867343:-|nuORF ENST00000552395.5_1_12:54854238-54867343:-|nuORF ENST00000552395.5_1_12:54854238-54867343:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7520751953125 2 453.751879 905.489204 -0.13913 -6.3132E-05 0.025326 1.1492E-05 -0.11381 -5.1641E-05 453.75201471082636 76.342 0.27969 72.927 72.83 73.109 -3.4151 10 7 2 0 0 0 0.6095 1 14903 14903 21.537 7.6309 1 665650 45560 11194 30292 30312 44873 44873 0.03267906931262132 TEVVNTGTV 9 Unmodified _TEVVNTGTV_ 0 0 0 REV__tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1 REV__tr|U7SIU1|U7SIU1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02231PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2392883300781 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 48.395 1 48.395 47.895 48.895 0 0 0 0 0.22962 1 9138 9138 14.838 1.3304 1 + 45561 24896 30293 30313 44874 44874 0.0033318441829806034 TEVVSISNL 9 Unmodified _TEVVSISNL_ 0 0 0 IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7652893066406 2 481.263665 960.512776 -0.0090808 -4.3702E-06 0.070022 3.3699E-05 0.060941 2.9329E-05 481.2635604250816 91.113 0.68057 87.253 86.929 87.61 -3.8595 40 19 3 0 0 0 0.10573 1 17862 17862 53.833 1.5644 1 3245800 45562 7326 30294 30314 44875 44875 0.030940439694290944 TEYCNGTSSN 10 Unmodified _TEYCNGTSSN_ 0 0 0 ADAM18|p.N559Mfs*23|1|0.28|ENSG00000168619|chr8:39680077-39680077|A/-|frameshift_variant;nc|ENSG00000168619|Q9Y3Q7-2|ADAM18;ENSG00000168619|ENST00000265707|ADAM18 ADAM18|p.N559Mfs*23|1|0.28|ENSG00000168619|chr8:39680077-39680077|A/-|frameshift_variant ADAM18|p.N559Mfs*23|1|0.28|ENSG00000168619|chr8:39680077-39680077|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 538.1402587890625 2 538.203478 1074.3924 0.2404 0.00012938 0.90926 0.00048937 1.1497 0.00061875 538.2038223530008 25.105 0.41832 23.571 23.332 23.751 -1.5342 24 11 3 0 0 0 0.91149 1 4064 4064 1.3295 0.87119 1 990660 45563 53 30295 30315 44876 44876 -0.1418173208646749 TEYCNGTSSN 10 Unmodified _TEYCNGTSSN_ 0 0 0 ADAM18|p.N559Mfs*23|1|0.28|ENSG00000168619|chr8:39680077-39680077|A/-|frameshift_variant;nc|ENSG00000168619|Q9Y3Q7-2|ADAM18;ENSG00000168619|ENST00000265707|ADAM18 ADAM18|p.N559Mfs*23|1|0.28|ENSG00000168619|chr8:39680077-39680077|A/-|frameshift_variant ADAM18|p.N559Mfs*23|1|0.28|ENSG00000168619|chr8:39680077-39680077|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 538.203478 1074.3924 0.25405 0.00013673 0.68201 0.00036706 0.93606 0.00050379 538.2038698671503 23.543 0.52441 23.543 23.303 23.827 0 0.016412 -0.00015342 NaN 1.3295 26 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1736800 45564 53 30295 30315 -0.1418173208646749 TEYGFYHDF 9 Unmodified _TEYGFYHDF_ 0 0 0 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2630004882812 2 589.743096 1177.47164 0.33982 0.00020041 0.82562 0.00048691 1.1654 0.00068731 589.7432805316505 120.96 0.68853 120.96 120.6 121.29 0 37 18 3 0 0 0 0.57447 1 23886 23886 14.838 6.9281 1 4553000 45565 4480 30296 30316 44877 44877 -0.10999717070058068 TEYGFYHDF 9 Unmodified _TEYGFYHDF_ 0 0 0 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2630004882812 2 589.743096 1177.47164 0.5617 0.00033126 -0.20732 -0.00012227 0.35437 0.00020899 589.7428343361353 125.87 0.70747 121.27 120.83 121.54 -4.5984 43 19 3 0 0 0 0.47479 1 24791 24791 37.974 17.52 1 4080600 45566 4480 30296 30316 44878 44878 -0.10999717070058068 TEYGFYHDF 9 Unmodified _TEYGFYHDF_ 0 0 0 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2630615234375 2 589.743096 1177.47164 0.70896 0.0004181 -0.30511 -0.00017994 0.40385 0.00023817 589.743049805134 125.95 0.69868 121.18 120.76 121.46 -4.7681 41 19 3 0 0 0 0.10782 1 24155 24155 51.415 50.54 1 3499800 45567 4480 30296 30316 44879 44879 -0.10999717070058068 TEYGFYHDF 9 Unmodified _TEYGFYHDF_ 0 0 0 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.262939453125 2 589.743096 1177.47164 0.21657 0.00012772 0.85855 0.00050633 1.0751 0.00063405 589.7430809167055 125.77 0.84147 121.12 120.67 121.51 -4.6495 48 23 3 0 0 0 0.73268 1 24161 24161 18.146 7.3224 1 3148700 45568 4480 30296 30316 44880 44880 -0.10999717070058068 TEYKLRTLQ 9 Unmodified _TEYKLRTLQ_ 0 0 0 nc|ENSG00000111679|P29350-4|PTPN6;nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6 nc|ENSG00000111679|P29350-4|PTPN6 nc|ENSG00000111679|P29350-4|PTPN6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3223876953125 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 66.534 1 63.207 62.707 63.707 -3.3268 0 0 0 0.23508 1 12527 12527 4.3292 0.38484 1 45569 12283 30297 30317 44881 44881 0.06533086051808823 TEYPVEKL 8 Unmodified _TEYPVEKL_ 0 0 0 ENST00000526129.5_1_1:76198579-76227103:+|nuORF;ENSG00000117054|ENST00000370841|ACADM;nc|ENSG00000117054|P11310-2|ACADM;ENST00000481374.1_1_1:76226824-76228992:+|nuORF ENST00000526129.5_1_1:76198579-76227103:+|nuORF ENST00000526129.5_1_1:76198579-76227103:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2544860839844 2 489.760758 977.506963 0.17876 8.7547E-05 0.57666 0.00028243 0.75542 0.00036997 489.76049121606115 82.406 0.48233 78.532 78.366 78.848 -3.8736 20 13 2 0 0 0 0.54916 1 15652 15652 25.399 4.9457 1 582240 45570 2972 30298 30318 44882 44882 0.01730945457757116 TEYPYPDY 8 Unmodified _TEYPYPDY_ 0 0 0 REV__FMOD|p.A267Rfs*14|2|0.19|ENSG00000122176|chr1:203347472-203347472|C/-|frameshift_variant REV__FMOD|p.A267Rfs*14|2|0.19|ENSG00000122176|chr1:203347472-203347472|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7005004882812 2 524.218923 1046.42329 0.27116 0.00014215 3.8431 0.0020146 4.1143 0.0021568 524.7216029698687 125.37 0.10194 120.72 120.64 120.74 -4.6495 4 2 2 0 0 0 1.0147 1 24124 24124 9.3474 6.77 1 680410 + 45571 15678 30299 30319 44883 44883 -0.09806210709962215 TEYTADYLA 9 Unmodified _TEYTADYLA_ 0 0 0 REV__ENST00000508046.1_1_5:68609355-68609532:-|nuORF REV__ENST00000508046.1_1_5:68609355-68609532:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6770629882812 2 523.73748 1045.46041 -0.52316 -0.000274 0.62487 0.00032727 0.10171 5.3271E-05 523.7377801821307 81.608 0.62207 77.768 77.474 78.096 -3.8392 28 17 2 0 0 0 0.5059 1 15459 15459 19.257 2.3147 1 8337100 + 45572 17768 30300 30320 44884 44884 -0.06050539164175461 TFAQNETF 8 Unmodified _TFAQNETF_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF;DNAH1|p.A3964V|1|0.2|ENSG00000114841|chr3:52397810-52397810|C/T|missense_variant nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7400207519531 2 479.219257 956.423961 0.040461 1.939E-05 -0.070308 -3.3693E-05 -0.029848 -1.4304E-05 479.2192105813803 138.15 0.62036 133.51 133.19 133.81 -4.6413 26 17 2 0 0 0 0.94038 1 27232 27232 20.415 20.415 1 2373000 45573 2813 30301 30321 44885 44885 -0.05599371270238862 TFARCIKER 9 Unmodified _TFARCIKER_ 0 0 0 REV__tr|U7T5Y6|U7T5Y6_FUSNUTypeIVsecretionsystemproteinVirB3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00022PE=4SV=1 REV__tr|U7T5Y6|U7T5Y6_FUSNUTypeIVsecretionsystemproteinVirB3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00022PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20611572265625 3 375.206209 1122.5968 NaN NaN NaN NaN NaN NaN NaN 39.516 1 37.111 36.611 37.611 -2.4049 0 0 0 0.23508 1 7054 7054 6.6304 0.43853 1 + 45574 25430 30302 30322 44886 44886 0.040402965853445494 TFCCVWPGAT 10 Unmodified _TFCCVWPGAT_ 0 0 0 REV__ENST00000261402.6_1_12:106461703-106466548:-|nuORF REV__ENST00000261402.6_1_12:106461703-106466548:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7932739257812 2 542.733163 1083.45177 0.30769 0.000167 -0.72576 -0.00039389 -0.41807 -0.0002269 542.7326667414335 37.642 0.65643 35.305 34.946 35.602 -2.3375 31 18 3 0 0 0 0.664 1 6688 6688 14.838 14.838 1 1326900 + 45575 20175 30303 30323 44887 44887 -0.08661507606007035 TFDALLSWL 9 Unmodified _TFDALLSWL_ 0 0 0 REV__CON__REFSEQ:XP_585019 REV__CON__REFSEQ:XP_585019 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2861938476562 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 89.769 1 89.769 89.269 90.269 0 0 0 0 0.16428 1 17533 17533 28.487 0 1 + + 45576 13561 30304 30324 44888 44888 0.024552247287829232 TFDIAVTFQ 9 Unmodified _TFDIAVTFQ_ 0 0 0 REV__ENSG00000196353|ENST00000429747|CPNE4 REV__ENSG00000196353|ENST00000429747|CPNE4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2689208984375 2 521.266207 1040.51786 -0.093511 -4.8744E-05 -0.015571 -8.1168E-06 -0.10908 -5.6861E-05 521.2663435886626 125.25 0.50117 120.65 120.36 120.86 -4.5984 32 13 3 0 0 0 0.36931 2 24675 24663;24675 27.629 2.6378 1 3619100 + 45577 19238 30305 30325 44889;44890 44890 -0.0007765216794268781 TFDQKPPP 8 Unmodified _TFDQKPPP_ 0 0 0 REV__nc|ENSG00000171016|Q9Y3Y4|PYGO1 REV__nc|ENSG00000171016|Q9Y3Y4|PYGO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.15972900390625 3 310.495754 928.465432 -0.92834 -0.00028825 0.49597 0.000154 -0.43238 -0.00013425 310.4959545924874 24.645 0.3409 22.791 22.606 22.947 -1.8534 15 9 3 0 0 0 1.0249 1 4038 4038 1.6526 1.1943 1 378280 + 45578 18195 30306 30326 44891 44891 -0.0016619051090174253 TFDRPPVP 8 Unmodified _TFDRPPVP_ 0 0 0 REV__nc|ENSG00000180574|Q2VIR3-2|EIF2S3B REV__nc|ENSG00000180574|Q2VIR3-2|EIF2S3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2501220703125 2 464.747985 927.481417 0.15013 6.9774E-05 -0.13155 -6.1137E-05 0.018583 8.6364E-06 464.74782734701677 60.211 0.60175 56.987 56.784 57.386 -3.2237 29 16 2 0 0 0 8448 1 11306 11306 0.063987 0 1 1361500 + 45579 24194 30307 30327 44892 44892 0.014775157260032756 TFDTNKDGF 9 Unmodified _TFDTNKDGF_ 0 0 0 nc|ENSG00000138472|O95843-2|GUCA1C;ENSG00000138472|ENST00000261047|GUCA1C nc|ENSG00000138472|O95843-2|GUCA1C nc|ENSG00000138472|O95843-2|GUCA1C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2796630859375 2 522.735271 1043.45599 0.18746 9.7995E-05 -0.52154 -0.00027263 -0.33408 -0.00017463 522.7349721602236 120.69 0.71983 120.69 120.32 121.04 0 41 19 3 0 0 0 0.80521 1 23829 23829 10.824 9.1713 1 6457000 45580 4177 30308 30328 44893 44893 -0.06400003587077663 TFDTNKDGF 9 Unmodified _TFDTNKDGF_ 0 0 0 nc|ENSG00000138472|O95843-2|GUCA1C;ENSG00000138472|ENST00000261047|GUCA1C nc|ENSG00000138472|O95843-2|GUCA1C nc|ENSG00000138472|O95843-2|GUCA1C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2705688476562 2 522.735271 1043.45599 -0.077616 -4.0572E-05 -0.37192 -0.00019442 -0.44954 -0.00023499 522.7350027319106 125.65 0.67499 121.05 120.72 121.4 -4.5984 41 18 3 0 0 0 0.80521 1 24736 24736 10.824 2.2306 1 4765200 45581 4177 30308 30328 44894 44894 -0.06400003587077663 TFDTNKDGF 9 Unmodified _TFDTNKDGF_ 0 0 0 nc|ENSG00000138472|O95843-2|GUCA1C;ENSG00000138472|ENST00000261047|GUCA1C nc|ENSG00000138472|O95843-2|GUCA1C nc|ENSG00000138472|O95843-2|GUCA1C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2779541015625 2 522.735271 1043.45599 -0.34514 -0.00018042 0.098519 5.1499E-05 -0.24662 -0.00012892 522.7352723734477 125.79 0.80243 121.02 120.73 121.53 -4.7681 49 22 3 0 0 0 0.77732 1 24092 24092 12.532 3.9383 1 4831600 45582 4177 30308 30328 44895 44895 -0.06400003587077663 TFDTNKDGF 9 Unmodified _TFDTNKDGF_ 0 0 0 nc|ENSG00000138472|O95843-2|GUCA1C;ENSG00000138472|ENST00000261047|GUCA1C nc|ENSG00000138472|O95843-2|GUCA1C nc|ENSG00000138472|O95843-2|GUCA1C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2789916992188 2 522.735271 1043.45599 0.26182 0.00013686 -0.63431 -0.00033158 -0.37249 -0.00019471 522.7348075290179 125.55 0.76707 120.9 120.64 121.41 -4.6495 49 21 3 0 0 0 0.74655 1 24138 24138 10.824 2.9138 1 3239900 45583 4177 30308 30328 44896 44896 -0.06400003587077663 TFDYGANVEY 10 Unmodified _TFDYGANVEY_ 0 0 0 REV__TRPS1|p.T237Afs*9|1|0.11|ENSG00000104447|chr8:115619351-115619352|-/TTTTCTGGTGTGCTGCA|frameshift_variant REV__TRPS1|p.T237Afs*9|1|0.11|ENSG00000104447|chr8:115619351-115619352|-/TTTTCTGGTGTGCTGCA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.268798828125 2 589.753661 1177.49277 0.38331 0.00022606 0.18178 0.0001072 0.56509 0.00033326 589.7533655686685 75.414 0.37319 71.999 71.781 72.154 -3.4151 16 10 2 0 0 0 0.13246 2 14718 14718;14732 51.63 7.7715 1 1093200 + 45584 14923 30309 30329 44897;44898 44897 -0.08887751761176332 TFDYGANVEY 10 Unmodified _TFDYGANVEY_ 0 0 0 REV__TRPS1|p.T237Afs*9|1|0.11|ENSG00000104447|chr8:115619351-115619352|-/TTTTCTGGTGTGCTGCA|frameshift_variant REV__TRPS1|p.T237Afs*9|1|0.11|ENSG00000104447|chr8:115619351-115619352|-/TTTTCTGGTGTGCTGCA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2557983398438 2 589.753661 1177.49277 0.26099 0.00015392 0.75828 0.0004472 1.0193 0.00060112 589.7541812024301 75.529 0.56387 71.896 71.608 72.171 -3.6337 23 15 2 0 0 0 0.29062 1 14349 14349 38.176 2.0485 1 2038200 + 45585 14923 30309 30329 44899 44899 -0.08887751761176332 TFDYGANVEY 10 Unmodified _TFDYGANVEY_ 0 0 0 REV__TRPS1|p.T237Afs*9|1|0.11|ENSG00000104447|chr8:115619351-115619352|-/TTTTCTGGTGTGCTGCA|frameshift_variant REV__TRPS1|p.T237Afs*9|1|0.11|ENSG00000104447|chr8:115619351-115619352|-/TTTTCTGGTGTGCTGCA|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.753661 1177.49277 0.52922 0.00031211 0.77867 0.00045923 1.3079 0.00077133 589.7540861635338 75.694 0.48195 71.971 71.688 72.17 -3.7227 0.015972 0.00015586 NaN 51.63 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2098100 + 45586 14923 30309 30329 -0.08887751761176332 TFDYGANVEY 10 Unmodified _TFDYGANVEY_ 0 0 0 REV__TRPS1|p.T237Afs*9|1|0.11|ENSG00000104447|chr8:115619351-115619352|-/TTTTCTGGTGTGCTGCA|frameshift_variant REV__TRPS1|p.T237Afs*9|1|0.11|ENSG00000104447|chr8:115619351-115619352|-/TTTTCTGGTGTGCTGCA|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 589.753661 1177.49277 0.26099 0.00015392 0.75828 0.0004472 1.0193 0.00060112 589.7541812024301 75.529 0.56387 71.896 71.608 72.171 -3.6337 -0.059831 0.00013181 NaN 51.63 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2038200 + 45587 14923 30309 30329 -0.08887751761176332 TFEDLVARAA 10 Unmodified _TFEDLVARAA_ 0 0 0 REV__N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant REV__N4BP1|p.N610Mfs*8|2|0.17|ENSG00000102921|chr16:48560814-48560814|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7905883789062 2 546.787838 1091.56112 0.11132 6.0867E-05 -0.14727 -8.0526E-05 -0.035954 -1.9659E-05 546.7877309304573 58.263 1.003 55.353 54.998 56.001 -2.9105 92 28 5 0 0 0 0.65405 1 11255 11255 15.847 0 1 80543000 + 45588 14855 30310 30330 44900 44900 0.019005376093446102 TFEDVCRYF 9 Unmodified _TFEDVCRYF_ 0 0 0 ENSG00000149260|ENST00000648180|CAPN5 ENSG00000149260|ENST00000648180|CAPN5 ENSG00000149260|ENST00000648180|CAPN5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.261962890625 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 115.35 1 110.88 110.38 111.38 -4.4726 0 0 0 0.21848 1 22736 22736 18.135 3.5533 1 45589 4779 30311 30331 44901 44901 -0.0754679753374603 TFEKKKDW 8 Unmodified _TFEKKKDW_ 0 0 0 REV__NHLRC2|p.R486Kfs*15|1|0.18|ENSG00000196865|chr10:113902548-113902549|-/A|frameshift_variant REV__NHLRC2|p.R486Kfs*15|1|0.18|ENSG00000196865|chr10:113902548-113902549|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27197265625 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 92.705 1 92.705 92.205 93.205 0 0 0 0 0.22676 1 18127 18127 1.3295 0 1 + 45590 24357 30312 30332 44902 44902 0.023337429602634074 TFETKDES 8 Unmodified _TFETKDES_ 0 0 0 REV__ENSG00000090861|ENST00000261772|AARS1 REV__ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73724365234375 2 478.714005 955.413456 -0.026539 -1.2705E-05 -0.031062 -1.487E-05 -0.057601 -2.7574E-05 478.71393878271743 67.4 1.4883 64.292 63.514 65.003 -3.1086 64 42 2 0 0 0 0.40661 2 12923 12919;12923 32.117 10.37 1 1941000 + 45591 14554 30313 30333 44903;44904 44904 -0.06603398715321873 TFETKDES 8 Unmodified _TFETKDES_ 0 0 0 REV__ENSG00000090861|ENST00000261772|AARS1 REV__ENSG00000090861|ENST00000261772|AARS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.739501953125 2 478.714005 955.413456 NaN NaN NaN NaN NaN NaN NaN 67.221 1 63.724 63.224 64.224 -3.4965 0 0 0 0.19954 1 12608 12608 24.674 10.092 1 + 45592 14554 30313 30333 44905 44905 -0.06603398715321873 TFEVTIGNY 9 Unmodified _TFEVTIGNY_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant;nc|ENSG00000115155|Q9HC10-5|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.256591796875 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 70.852 1 67.385 66.885 67.885 -3.467 0 0 0 0.011905 1 13421 13421 71.134 3.0529 1 45593 2824 30314 30334 44906 44906 -0.022422425476179342 TFFYIREF 8 Unmodified _TFFYIREF_ 0 0 0 ENST00000590414.6_1_19:38230075-38230369:-|nuORF ENST00000590414.6_1_19:38230075-38230369:-|nuORF ENST00000590414.6_1_19:38230075-38230369:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.1419982910156 3 374.858804 1121.55458 NaN NaN NaN NaN NaN NaN NaN 75.337 1 71.615 71.115 72.115 -3.7227 0 0 0 0.21486 1 14249 14249 3.9444 1.2092 1 45594 11601 30315 30335 44907 44907 -0.0013335555140656652 TFGKGLLI 8 Unmodified _TFGKGLLI_ 0 0 0 REV__ENSG00000167619|ENST00000301204|TMEM145 REV__ENSG00000167619|ENST00000301204|TMEM145 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.23699951171875 2 424.765646 847.516739 0.12817 5.4442E-05 0.37446 0.00015906 0.50263 0.0002135 424.7657534721825 23.81 0.58557 23.81 23.48 24.066 0 24 16 2 0 0 0 0.84608 1 4073 4073 2.3027 0 1 1244600 + 45595 17946 30316 30336 44908 44908 0.08688178253805745 TFGKGLLI 8 Unmodified _TFGKGLLI_ 0 0 0 REV__ENSG00000167619|ENST00000301204|TMEM145 REV__ENSG00000167619|ENST00000301204|TMEM145 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 424.765646 847.516739 -0.3631 -0.00015423 0.66153 0.00028099 0.29842 0.00012676 424.7660047426143 25.729 0.45157 23.876 23.57 24.022 -1.8534 0.032993 0.00011801 NaN 2.3027 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 559410 + 45596 17946 30316 30336 0.08688178253805745 TFGKLVRLV 9 Unmodified _TFGKLVRLV_ 0 0 0 nc|ENSG00000196460|Q6ZV50|RFX8 nc|ENSG00000196460|Q6ZV50|RFX8 nc|ENSG00000196460|Q6ZV50|RFX8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.8910827636719 3 344.890327 1031.64915 NaN NaN NaN NaN NaN NaN NaN 13.642 1 13.642 13.142 14.142 0 0 0 0 0.1964 1 1983 1983 0.12781 0.063827 1 45597 12535 30317 30337 44909 44909 0.1345920299061163 TFGKMKPN 8 Unmodified _TFGKMKPN_ 0 0 0 REV__ENST00000591433.5_1_19:1358605-1371443:+|nuORF REV__ENST00000591433.5_1_19:1358605-1371443:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.52239990234375 2 461.744388 921.474223 -0.063348 -2.9251E-05 1.2244 0.00056536 1.1611 0.00053611 461.74488500297434 136.63 1.0899 131.99 131.57 132.66 -4.6399 90 30 4 0 0 0 1.0011 1 27031 27031 7.9102 2.1497 1 35055000 + 45598 23334 30318 30338 44910 44910 0.010344598539177241 TFGLNDSAKL 10 Unmodified _TFGLNDSAKL_ 0 0 0 REV__ENST00000433116.2_1_12:69079612-69079708:-|nuORF REV__ENST00000433116.2_1_12:69079612-69079708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.281494140625 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 52.778 1 49.683 49.183 50.183 -3.0954 0 0 0 2.8426 1 9749 9749 0.26539 0 1 + 45599 21639 30319 30339 44911 44911 0.020531352350417365 TFGNRTLSKK 10 Unmodified _TFGNRTLSKK_ 0 0 0 nc|ENSG00000164830|Q8N573-7|OXR1;nc|ENSG00000164830|Q8N573-4|OXR1;nc|ENSG00000164830|Q8N573-6|OXR1;nc|ENSG00000164830|Q8N573-2|OXR1;nc|ENSG00000164830|Q8N573-5|OXR1;ENSG00000164830|ENST00000517566|OXR1;nc|ENSG00000164830|Q8N573|OXR1 nc|ENSG00000164830|Q8N573-7|OXR1 nc|ENSG00000164830|Q8N573-7|OXR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3319702148438 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 127.42 1 122.8 122.3 123.3 -4.6172 0 0 0 2.8426 1 25128 25128 0.043787 0 1 45600 5570 30320 30340 44912 44912 0.0765590814596635 TFGPILGP 8 Unmodified _TFGPILGP_ 0 0 0 REV__nc|ENSG00000135018|Q9UMX0-3|UBQLN1 REV__nc|ENSG00000135018|Q9UMX0-3|UBQLN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 401.2272644042969 2 401.228897 800.44324 NaN NaN NaN NaN NaN NaN NaN 72.372 1 69.061 68.561 69.561 -3.3107 0 0 0 0.21486 1 14104 14104 10.183 0 1 + 45601 16240 30321 30341 44913 44913 0.035036298113254816 TFGPKEPLQY 10 Unmodified _TFGPKEPLQY_ 0 0 0 REV__ENST00000422154.6_1_X:102940158-102941669:-|nuORF REV__ENST00000422154.6_1_X:102940158-102941669:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2607421875 2 590.305864 1178.59717 0.23233 0.00013715 -2.4261 -0.0014321 -2.1938 -0.001295 590.3034269492395 75.905 0.30912 72.271 72.1 72.409 -3.6337 11 8 2 0 0 0 0.70357 1 14438 14438 10.824 0.75 1 1299600 + 45602 21519 30322 30342 44914 44914 0.015019947861901528 TFGQSAQA 8 Unmodified _TFGQSAQA_ 0 0 0 ENSG00000165507|ENST00000298295|DEPP1 ENSG00000165507|ENST00000298295|DEPP1 ENSG00000165507|ENST00000298295|DEPP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.29998779296875 2 405.193042 808.371532 NaN NaN NaN NaN NaN NaN NaN 69.979 1 66.512 66.012 67.012 -3.467 0 0 0 0.21486 1 13243 13243 9.3474 0 1 45603 5636 30323 30343 44915 44915 -0.04031909613195239 TFGRRKQLL 9 Unmodified _TFGRRKQLL_ 0 0 0 REV__ENST00000439819.5_1_14:95624562-95625308:+|nuORF REV__ENST00000439819.5_1_14:95624562-95625308:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.1279296875 3 373.564614 1117.67201 0.18009 6.7275E-05 0.2102 7.8523E-05 0.39029 0.0001458 373.56458442763676 46.891 0.45785 46.891 46.559 47.017 0 14 12 2 0 0 0 0.8825 1 8801 8801 0 0 1 508790 + 45604 21698 30324 30344 44916 44916 0.1178822210808903 TFGRRKQLL 9 Unmodified _TFGRRKQLL_ 0 0 0 REV__ENST00000439819.5_1_14:95624562-95625308:+|nuORF REV__ENST00000439819.5_1_14:95624562-95625308:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 373.564614 1117.67201 -0.34537 -0.00012902 0.15244 5.6946E-05 -0.19294 -7.2074E-05 373.89890521738084 49.421 0.56227 46.54 46.132 46.695 -2.8811 -0.10398 -0.0002132 NaN 0 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 662140 + 45605 21698 30324 30344 0.1178822210808903 TFGRRKQLL 9 Unmodified _TFGRRKQLL_ 0 0 0 REV__ENST00000439819.5_1_14:95624562-95625308:+|nuORF REV__ENST00000439819.5_1_14:95624562-95625308:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 373.564614 1117.67201 0.032448 1.2122E-05 0.33545 0.00012531 0.3679 0.00013743 373.564566575655 49.586 0.52372 46.587 46.344 46.868 -2.999 -0.056782 -8.1048E-06 NaN 0 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 702710 + 45606 21698 30324 30344 0.1178822210808903 TFGRRKQLL 9 Unmodified _TFGRRKQLL_ 0 0 0 REV__ENST00000439819.5_1_14:95624562-95625308:+|nuORF REV__ENST00000439819.5_1_14:95624562-95625308:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 373.564614 1117.67201 -0.76065 -0.00028415 0.89531 0.00033446 0.13466 5.0302E-05 373.56493597698346 49.564 0.63274 46.557 46.207 46.839 -3.0068 -0.086499 0.00061933 NaN 0 20 17 2 NaN NaN NaN NaN 0 NaN NaN 0 816030 + 45607 21698 30324 30344 0.1178822210808903 TFGSIIQY 8 Unmodified _TFGSIIQY_ 0 0 0 REV__ENST00000493087.5_1_12:32755237-32793464:+|nuORF REV__ENST00000493087.5_1_12:32755237-32793464:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 125.37 1 120.77 120.27 121.27 -4.5984 0 0 0 0.23881 1 24717 24717 0.62683 0.62345 1 + 45608 16502 30325 30345 44917 44917 0.00354693631857117 TFIDRYYEL 9 Unmodified _TFIDRYYEL_ 0 0 0 REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1 REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 407.87200927734375 3 407.20464 1218.59209 -1.4571 -0.00059333 -0.76335 -0.00031084 -2.2204 -0.00090417 407.204361264712 19.577 0.73033 17.942 17.462 18.192 -1.6351 39 20 3 0 0 0 0.64764 1 2987 2987 0.96228 0.26461 1 831410 + 45609 16569 30326 30346 44918 44918 -0.008463090764280423 TFIDSDSHY 9 Unmodified _TFIDSDSHY_ 0 0 0 REV__FUT3|p.R160H|1|0.21|ENSG00000171124|chr19:5844361-5844361|C/T|missense_variant REV__FUT3|p.R160H|1|0.21|ENSG00000171124|chr19:5844361-5844361|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7919921875 2 542.732729 1083.4509 0.34139 0.00018528 0.26567 0.00014419 0.60705 0.00032947 542.7328796052806 35.087 1.2403 35.087 34.483 35.723 0 53 35 4 0 0 0 0.46882 1 6417 6417 30.225 9.7712 1 3482400 + 45610 23555 30327 30347 44919 44919 -0.08748307449695858 TFIDSDSHY 9 Unmodified _TFIDSDSHY_ 0 0 0 REV__FUT3|p.R160H|1|0.21|ENSG00000171124|chr19:5844361-5844361|C/T|missense_variant REV__FUT3|p.R160H|1|0.21|ENSG00000171124|chr19:5844361-5844361|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.732729 1083.4509 -0.13584 -7.3726E-05 0.17517 9.5069E-05 0.039326 2.1344E-05 542.7328185549484 37.748 0.58889 35.279 34.915 35.504 -2.4688 0.025184 8.1686E-05 NaN 30.225 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1791200 + 45611 23555 30327 30347 -0.08748307449695858 TFIDSDSHY 9 Unmodified _TFIDSDSHY_ 0 0 0 REV__FUT3|p.R160H|1|0.21|ENSG00000171124|chr19:5844361-5844361|C/T|missense_variant REV__FUT3|p.R160H|1|0.21|ENSG00000171124|chr19:5844361-5844361|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.732729 1083.4509 0.09692 5.2601E-05 -0.06599 -3.5815E-05 0.030929 1.6786E-05 542.7326161001669 37.692 0.55048 35.344 35.063 35.614 -2.3479 0.090156 -0.00018008 NaN 30.225 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1596500 + 45612 23555 30327 30347 -0.08748307449695858 TFIDSDSHY 9 Unmodified _TFIDSDSHY_ 0 0 0 REV__FUT3|p.R160H|1|0.21|ENSG00000171124|chr19:5844361-5844361|C/T|missense_variant REV__FUT3|p.R160H|1|0.21|ENSG00000171124|chr19:5844361-5844361|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.732729 1083.4509 0.3077 0.000167 0.074261 4.0304E-05 0.38196 0.0002073 542.7326667414335 37.642 0.65643 35.305 34.946 35.602 -2.3375 0.051057 -2.7844E-05 NaN 30.225 31 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1326900 + 45613 23555 30327 30347 -0.08748307449695858 TFITIVIKLIL 11 Unmodified _TFITIVIKLIL_ 0 0 0 REV__nc|ENSG00000171365|P51795-1|CLCN5 REV__nc|ENSG00000171365|P51795-1|CLCN5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25018310546875 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 35.644 1 33.391 32.891 33.891 -2.2527 0 0 0 0.22632 1 6286 6286 0.00056442 0 1 + 45614 18220 30328 30348 44920 44920 0.21658900267129866 TFITIVIKLIL 11 Unmodified _TFITIVIKLIL_ 0 0 0 REV__nc|ENSG00000171365|P51795-1|CLCN5 REV__nc|ENSG00000171365|P51795-1|CLCN5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25128173828125 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 66.962 1 63.466 62.966 63.966 -3.4965 0 0 0 0.23698 1 12557 12557 1.3296 0.55311 1 + 45615 18220 30328 30348 44921 44921 0.21658900267129866 TFITIVIKLIL 11 Unmodified _TFITIVIKLIL_ 0 0 0 REV__nc|ENSG00000171365|P51795-1|CLCN5 REV__nc|ENSG00000171365|P51795-1|CLCN5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25079345703125 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 66.669 1 63.342 62.842 63.842 -3.3268 0 0 0 0.23698 1 12554 12554 0.45452 0.29519 1 + 45616 18220 30328 30348 44922 44922 0.21658900267129866 TFIWEHLFYWK 11 Unmodified _TFIWEHLFYWK_ 0 0 0 nc|ENSG00000183454|Q12879-2|GRIN2A;GRIN2A|p.S1341Afs*56|4|0.26|ENSG00000183454|chr16:9763523-9763523|T/-|frameshift_variant;ENSG00000183454|ENST00000330684|GRIN2A nc|ENSG00000183454|Q12879-2|GRIN2A nc|ENSG00000183454|Q12879-2|GRIN2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3988037109375 2 785.398087 1568.78162 NaN NaN NaN NaN NaN NaN NaN 106.89 1 102.76 102.26 103.26 -4.135 0 0 0 0.22632 1 20555 20555 0 0 1 45617 6847 30329 30349 44923 44923 0.019981829367225146 TFLALRGSCLY 11 Unmodified _TFLALRGSCLY_ 0 0 0 nc|ENSG00000147481|Q9NSN8-2|SNTG1;ENSG00000147481|ENST00000642720|SNTG1 nc|ENSG00000147481|Q9NSN8-2|SNTG1 nc|ENSG00000147481|Q9NSN8-2|SNTG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7783813476562 2 622.328816 1242.64308 1.1406 0.00070981 -2.3043 -0.001434 -1.1637 -0.0007242 622.325866140649 123.97 0.17667 119.39 119.34 119.52 -4.5757 5 4 2 0 0 0 0.7876 1 24446 24446 5.2969 1.3525 1 487970 45618 4705 30330 30350 44924 44924 0.031463166967796496 TFLEEVRKG 9 Unmodified _TFLEEVRKG_ 0 0 0 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 70.34 1 70.34 69.84 70.84 0 0 0 0 0.23508 1 13623 13623 2.4985 0 1 45619 6661 30331 30351 44925 44925 0.0461712798901317 TFLEEVRKG 9 Unmodified _TFLEEVRKG_ 0 0 0 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2011413574219 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 125.26 1 125.26 124.76 125.76 0 0 0 0 0.23508 1 24703 24703 1.0715 0.10919 1 45620 6661 30331 30351 44926 44926 0.0461712798901317 TFLEEVRKG 9 Unmodified _TFLEEVRKG_ 0 0 0 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 73.771 1 70.407 69.907 70.907 -3.3643 0 0 0 0.23508 1 14382 14382 4.897 0 1 45621 6661 30331 30351 44927 44927 0.0461712798901317 TFLEEVRKG 9 Unmodified _TFLEEVRKG_ 0 0 0 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 74.03 1 70.666 70.166 71.166 -3.3643 0 0 0 0.23508 1 14438 14438 4.5289 0 1 45622 6661 30331 30351 44928 44928 0.0461712798901317 TFLEEVRKG 9 Unmodified _TFLEEVRKG_ 0 0 0 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2019348144531 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 74.134 1 70.458 69.958 70.958 -3.6764 0 0 0 0.23508 1 14020 14020 4.897 0 1 45623 6661 30331 30351 44929 44929 0.0461712798901317 TFLEEVRKG 9 Unmodified _TFLEEVRKG_ 0 0 0 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 74.198 1 70.604 70.104 71.104 -3.594 0 0 0 0.23508 1 14089 14089 4.897 0 1 45624 6661 30331 30351 44930 44930 0.0461712798901317 TFLEEVRKG 9 Unmodified _TFLEEVRKG_ 0 0 0 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 ENSG00000180210|ENST00000311907|F2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 100.77 1 96.784 96.284 97.284 -3.9895 0 0 0 0.23508 1 19365 19365 4.5289 0 1 45625 6661 30331 30351 44931 44931 0.0461712798901317 TFLFHQRLFGQ 11 Unmodified _TFLFHQRLFGQ_ 0 0 0 TMEM117|p.K84T|1|0.16|ENSG00000139173|chr12:43844902-43844902|A/C|missense_variant TMEM117|p.K84T|1|0.16|ENSG00000139173|chr12:43844902-43844902|A/C|missense_variant TMEM117|p.K84T|1|0.16|ENSG00000139173|chr12:43844902-43844902|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2467041015625 3 465.250695 1392.73025 NaN NaN NaN NaN NaN NaN NaN 118.06 1 113.45 112.95 113.95 -4.6106 0 0 0 0.22632 1 22655 22655 0.58532 0.55911 1 45626 25858 30332 30352 44932 44932 0.04959858962706676 TFLRGKVFIY 10 Unmodified _TFLRGKVFIY_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7633666992188 2 622.363516 1242.71248 NaN NaN NaN NaN NaN NaN NaN 108.87 1 104.68 104.18 105.18 -4.1826 0 0 0 2.8426 1 20951 20951 0.26539 0.20152 1 45627 4836 30333 30353 44933 44933 0.10083143707856834 TFLRWWQWHRL 11 Unmodified _TFLRWWQWHRL_ 0 0 0 REV__nc|ENSG00000105357|Q7Z406|MYH14 REV__nc|ENSG00000105357|Q7Z406|MYH14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7785034179688 3 543.624755 1627.85244 NaN NaN NaN NaN NaN NaN NaN 103.64 1 99.424 98.924 99.924 -4.2183 0 0 0 0.22632 1 20378 20378 0.094841 0.094841 1 + 45628 14980 30334 30354 44934 44934 0.06362320764901597 TFLVEEASKV 10 Unmodified _TFLVEEASKV_ 0 0 0 REV__ENST00000505757.2_1_4:77266070-77266346:+|nuORF REV__ENST00000505757.2_1_4:77266070-77266346:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2078857421875 3 374.87289 1121.59684 -0.039244 -1.4711E-05 1.2801 0.00047988 1.2409 0.00046517 374.8733659248068 109.72 0.56281 105.53 105.33 105.89 -4.1826 23 15 2 0 0 0 0.75099 1 21147 21147 5.4027 0 1 1461400 + 45629 22480 30335 30355 44935 44935 0.04090575066334168 TFNVFYYL 8 Unmodified _TFNVFYYL_ 0 0 0 nc|ENSG00000196535|Q92614-5|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;ENST00000588791.1_1_17:27442450-27447678:-|nuORF nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-5|MYO18A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2825927734375 2 533.765843 1065.51713 -0.18018 -9.6174E-05 -0.18147 -9.6862E-05 -0.36165 -0.00019304 533.7656259087784 59.829 0.81728 59.829 59.321 60.138 0 55 22 4 0 0 0 0.9455 1 11370 11370 30.198 20.124 1 5198900 45630 7280 30336 30356 44936 44936 -0.013004468170265682 TFNVFYYL 8 Unmodified _TFNVFYYL_ 0 0 0 nc|ENSG00000196535|Q92614-5|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;ENST00000588791.1_1_17:27442450-27447678:-|nuORF nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-5|MYO18A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2826538085938 2 533.765843 1065.51713 0.15506 8.2765E-05 -0.69678 -0.00037192 -0.54172 -0.00028915 533.7653511834181 62.861 1.0001 59.9 59.288 60.288 -2.9614 67 28 3 0 0 0 0.9455 1 12014 12014 22.453 12.379 1 5028900 45631 7280 30336 30356 44937 44937 -0.013004468170265682 TFNVFYYL 8 Unmodified _TFNVFYYL_ 0 0 0 nc|ENSG00000196535|Q92614-5|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;ENST00000588791.1_1_17:27442450-27447678:-|nuORF nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-5|MYO18A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2830810546875 2 533.765843 1065.51713 0.30033 0.00016031 -0.98216 -0.00052424 -0.68183 -0.00036394 533.7652429914082 63.153 0.96439 59.896 59.298 60.263 -3.2567 69 27 3 0 0 0 0.9455 1 11728 11728 30.198 8.4517 1 4796600 45632 7280 30336 30356 44938 44938 -0.013004468170265682 TFNVIERVT 9 Unmodified _TFNVIERVT_ 0 0 0 ENST00000600178.5_1_19:39307991-39322412:-|nuORF ENST00000600178.5_1_19:39307991-39322412:-|nuORF ENST00000600178.5_1_19:39307991-39322412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2099304199219 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 128.99 1 124.25 123.75 124.75 -4.7408 0 0 0 0.23508 1 24822 24822 10.151 3.5202 1 45633 11699 30337 30357 44939 44939 0.0461712798901317 TFPKPTPAA 9 Unmodified _TFPKPTPAA_ 0 0 0 ROBO2|p.W347Lfs*21|1|0.36|ENSG00000185008|chr3:77546436-77546437|-/T|frameshift_variant ROBO2|p.W347Lfs*21|1|0.36|ENSG00000185008|chr3:77546436-77546437|-/T|frameshift_variant ROBO2|p.W347Lfs*21|1|0.36|ENSG00000185008|chr3:77546436-77546437|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2572021484375 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 60.151 1 60.151 59.651 60.651 0 0 0 0 0.22519 1 11529 11529 16.149 1.3108 1 45634 25618 30338 30358 44940 44940 0.034706863857991266 TFPKPTPAA 9 Unmodified _TFPKPTPAA_ 0 0 0 ROBO2|p.W347Lfs*21|1|0.36|ENSG00000185008|chr3:77546436-77546437|-/T|frameshift_variant ROBO2|p.W347Lfs*21|1|0.36|ENSG00000185008|chr3:77546436-77546437|-/T|frameshift_variant ROBO2|p.W347Lfs*21|1|0.36|ENSG00000185008|chr3:77546436-77546437|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2576599121094 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 137.7 1 133.06 132.56 133.56 -4.6413 0 0 0 0.23508 1 27181 27181 11.64 1.4569 1 45635 25618 30338 30358 44941 44941 0.034706863857991266 TFPRLRPVT 9 Unmodified _TFPRLRPVT_ 0 0 0 REV__ENST00000272647.9_1_2:128620851-128620953:-|nuORF REV__ENST00000272647.9_1_2:128620851-128620953:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77685546875 2 543.824558 1085.63456 NaN NaN NaN NaN NaN NaN NaN 147.91 1 142.85 142.35 143.35 -5.0595 0 0 0 0.22962 1 28643 28643 14.838 0 1 + 45636 20279 30339 30359 44942 44942 0.09517130842459665 TFQEPLYPA 9 Unmodified _TFQEPLYPA_ 0 0 0 ENSG00000106785|ENST00000341469|TRIM14 ENSG00000106785|ENST00000341469|TRIM14 ENSG00000106785|ENST00000341469|TRIM14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.264404296875 2 533.266207 1064.51786 NaN NaN NaN NaN NaN NaN NaN 50.405 1 50.405 49.905 50.905 0 0 0 0 0.23508 1 9543 9543 12.241 0.60036 1 45637 2405 30340 30360 44943 44943 -0.011816521679747893 TFQKESRSV 9 Unmodified _TFQKESRSV_ 0 0 0 ENST00000483617.5_2_2:131126744-131127839:+|nuORF;PTPN18|p.H302Pfs*51|1|0.35|ENSG00000072135|chr2:130370939-130370940|-/C|frameshift_variant;nc|ENSG00000072135|Q99952-2|PTPN18;ENSG00000072135|ENST00000175756|PTPN18 ENST00000483617.5_2_2:131126744-131127839:+|nuORF ENST00000483617.5_2_2:131126744-131127839:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2831420898438 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 92.723 1 92.723 92.223 93.223 0 0 0 0 0.22519 1 18130 18130 16.149 0.30192 1 45638 1460 30341 30361 44944 44944 0.019316534665676954 TFQPFQRSI 9 Unmodified _TFQPFQRSI_ 0 0 0 nc|ENSG00000204356|P18615-4|NELFE;ENST00000488426.5_1_6:31922795-31926316:-|nuORF;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE;ENST00000481121.5_1_6:31921790-31926696:-|nuORF;ENST00000492185.5_1_6:31922795-31926696:-|nuORF nc|ENSG00000204356|P18615-4|NELFE;ENST00000481121.5_1_6:31921790-31926696:-|nuORF ENST00000481121.5_1_6:31921790-31926696:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2113342285156 3 375.201341 1122.58219 -0.45736 -0.0001716 -2.6316 -0.00098738 -3.089 -0.001159 375.2006886945557 62.577 0.75814 59.337 59.105 59.864 -3.2395 33 21 2 0 0 0 0.68708 1 11814 11814 7.1017 2.2047 1 1145500 45639 12559;10367 30342 30362 44945 44945 0.025805477088624684 TFQSSEAPSLL 11 Unmodified _TFQSSEAPSLL_ 0 0 0 nc|ENSG00000198026|Q9H4Z2-2|ZNF335;ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant;ENSG00000198026|ENST00000322927|ZNF335 nc|ENSG00000198026|Q9H4Z2-2|ZNF335 nc|ENSG00000198026|Q9H4Z2-2|ZNF335 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2578735351562 2 590.298236 1178.58192 NaN NaN NaN NaN NaN NaN NaN 110.39 1 110.39 109.89 110.89 0 0 0 0 0.22085 1 21712 21712 13.906 3.8321 1 45640 7424 30343 30363 44946 44946 -0.00022916801663086517 TFRALSHPYS 10 Unmodified _TFRALSHPYS_ 0 0 0 ENSG00000174279|ENST00000308618|EVX2 ENSG00000174279|ENST00000308618|EVX2 ENSG00000174279|ENST00000308618|EVX2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.25146484375 2 589.80128 1177.58801 NaN NaN NaN NaN NaN NaN NaN 72.257 1 68.718 68.218 69.218 -3.5385 0 0 0 0.22588 1 13703 13703 10.074 2.7847 1 45641 6339 30344 30364 44947 44947 0.006316462205177231 TFRPHYWEWWL 11 Unmodified _TFRPHYWEWWL_ 0 0 0 REV__ENSG00000184908|ENST00000375679|CLCNKB;REV__nc|ENSG00000186510|P51800-2|CLCNKA REV__ENSG00000184908|ENST00000375679|CLCNKB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2640380859375 3 540.929733 1619.76737 0.48412 0.00026188 1.4551 0.00078711 1.9392 0.001049 540.9318142503048 118.95 0.17381 114.45 114.36 114.53 -4.502 5 4 2 0 0 0 0.89074 1 23444 23444 1.4551 1.4289 1 1156000 + 45642 18921;19036 30345 30365 44948 44948 -0.017724694915386863 TFRRDHPPG 9 Unmodified _TFRRDHPPG_ 0 0 0 REV__nc|ENSG00000055332|P19525-2|EIF2AK2 REV__nc|ENSG00000055332|P19525-2|EIF2AK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2611694335938 2 541.778139 1081.54173 0.41435 0.00022449 -3.0202 -0.0016363 -2.6059 -0.0014118 541.7762831729304 74.412 0.17324 74.412 74.29 74.463 0 5 4 2 0 0 0 0.70212 1 14428 14428 16.149 2.2431 1 983650 + 45643 14115 30346 30366 44949 44949 0.004216261090732587 TFRVKPKKKL 10 Unmodified _TFRVKPKKKL_ 0 0 0 REV__ENSG00000175018|ENST00000368821|TEX36 REV__ENSG00000175018|ENST00000368821|TEX36 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7555541992188 2 622.913707 1243.81286 NaN NaN NaN NaN NaN NaN NaN 119.03 1 119.03 118.53 119.53 0 0 0 0 0.22588 1 23446 23446 1.6526 0 1 + 45644 18445 30347 30367 44950 44950 0.2007080076150487 TFSCDCHFY 9 Unmodified _TFSCDCHFY_ 0 0 0 L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|98|3|anti-sense L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|98|3|anti-sense L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|98|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 374.8056945800781 3 374.805494 1121.39465 NaN NaN NaN NaN NaN NaN NaN 100.78 1 96.787 96.287 97.287 -3.9895 0 0 0 0.23508 1 19366 19366 5.2969 1.3525 1 45645 12016 30348 30368 44951 44951 -0.16118974882397197 TFSCFDCC 8 Unmodified _TFSCFDCC_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|240|3|anti-sense REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|240|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 463.1468200683594 2 463.148074 924.281596 NaN NaN NaN NaN NaN NaN NaN 143.49 1 143.49 142.99 143.99 0 0 0 0 0.21486 1 28635 28635 2.5775 1.8871 1 + 45646 23767 30349 30369 44952 44952 -0.1835736659994609 TFSCFDCC 8 Unmodified _TFSCFDCC_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|240|3|anti-sense REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|240|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 463.1462707519531 2 463.148074 924.281596 NaN NaN NaN NaN NaN NaN NaN 144.18 1 139.51 139.01 140.01 -4.6694 0 0 0 0.21486 1 28540 28540 5.7604 4.9668 1 + 45647 23767 30349 30369 44953 44953 -0.1835736659994609 TFSCFDCC 8 Unmodified _TFSCFDCC_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|240|3|anti-sense REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|240|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 463.146240234375 2 463.148074 924.281596 NaN NaN NaN NaN NaN NaN NaN 147.12 1 142.01 141.51 142.51 -5.1108 0 0 0 0.21486 1 28464 28464 2.5775 1.7838 1 + 45648 23767 30349 30369 44954 44954 -0.1835736659994609 TFSCFDCC 8 Unmodified _TFSCFDCC_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|240|3|anti-sense REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|240|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 309.1004333496094 3 309.101142 924.281596 NaN NaN NaN NaN NaN NaN NaN 178.88 1 174.01 173.51 174.51 -4.8686 0 0 0 0.21486 1 35617 35617 0 0 1 + 45649 23767 30349 30369 44955 44955 -0.1835736659994609 TFSDIGKY 8 Unmodified _TFSDIGKY_ 0 0 0 LRRIQ3|p.D424G|1|0.14|ENSG00000162620|chr1:74041660-74041660|T/C|missense_variant LRRIQ3|p.D424G|1|0.14|ENSG00000162620|chr1:74041660-74041660|T/C|missense_variant LRRIQ3|p.D424G|1|0.14|ENSG00000162620|chr1:74041660-74041660|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2384948730469 2 465.732 929.449448 0.45795 0.00021328 -0.58744 -0.00027359 -0.12949 -6.0309E-05 465.7316715364143 32.327 0.62296 30.179 29.864 30.487 -2.1483 34 17 3 0 0 0 0.9455 1 5607 5607 16.942 0 1 4630700 45650 12091 30350 30370 44956 44956 -0.018098967478067607 TFSFTCLQTS 10 Unmodified _TFSFTCLQTS_ 0 0 0 REV__SLC25A35|p.S189F|1|0.69|ENSG00000125434|chr17:8291361-8291361|G/A|missense_variant REV__SLC25A35|p.S189F|1|0.69|ENSG00000125434|chr17:8291361-8291361|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.5070495605469 3 378.842713 1133.50631 0.87423 0.0003312 2.2477 0.00085153 3.122 0.0011827 379.177651093149 26.366 0.30989 24.584 24.416 24.726 -1.7821 13 8 2 0 0 0 0.51405 1 4654 4654 3.8763 1.3778 1 392240 + 45651 24634 30351 30371 44957 44957 -0.05510217253595329 TFSKLDYS 8 Unmodified _TFSKLDYS_ 0 0 0 ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000159346|ENST00000340990|ADIPOR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2377014160156 2 480.737283 959.460012 -0.051469 -2.4743E-05 -1.822 -0.00087591 -1.8735 -0.00090066 480.73638483703803 43.436 0.38755 40.717 40.595 40.982 -2.7191 11 10 2 0 0 0 8448 1 8166 8166 10.074 3.8681 1 457820 45652 5203 30352 30372 44958 44958 -0.02133914093394651 TFSLSQEDDRY 11 Unmodified _TFSLSQEDDRY_ 0 0 0 nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-3|ATRN nc|ENSG00000088812|O75882-2|ATRN nc|ENSG00000088812|O75882-2|ATRN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7532043457031 3 454.205368 1359.59427 NaN NaN NaN NaN NaN NaN NaN 64.887 1 61.604 61.104 62.104 -3.2832 0 0 0 0.22632 1 12191 12191 0.58532 0.41332 1 45653 1734 30353 30373 44959 44959 -0.07113925129283416 TFSSTVPST 9 Unmodified _TFSSTVPST_ 0 0 0 ENSG00000244462|ENST00000374114|RBM12;RBM12|p.K519Rfs*9|1|0.04|ENSG00000244462|chr20:35653767-35653768|-/C|frameshift_variant;RBM12|p.C431Vfs*4|1|0.33|ENSG00000244462|chr20:35654032-35654032|A/-|frameshift_variant;RBM12|p.F450Lfs*13|1|0.15|ENSG00000244462|chr20:35653973-35653973|A/-|frameshift_variant ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2417907714844 2 463.726915 925.439277 0.14114 6.5449E-05 -0.26485 -0.00012282 -0.12371 -5.7369E-05 463.72675495115374 104.09 1.8986 99.742 99.249 101.15 -4.346 161 54 5 0 0 0 0.28819 1 19939 19939 32.305 5.4218 1 101170000 45654 7880 30354 30374 44960 44960 -0.026425044730444824 TFSSTVPST 9 Unmodified _TFSSTVPST_ 0 0 0 ENSG00000244462|ENST00000374114|RBM12;RBM12|p.K519Rfs*9|1|0.04|ENSG00000244462|chr20:35653767-35653768|-/C|frameshift_variant;RBM12|p.C431Vfs*4|1|0.33|ENSG00000244462|chr20:35654032-35654032|A/-|frameshift_variant;RBM12|p.F450Lfs*13|1|0.15|ENSG00000244462|chr20:35653973-35653973|A/-|frameshift_variant ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 463.726915 925.439277 -0.22469 -0.0001042 0.038884 1.8032E-05 -0.18581 -8.6165E-05 463.72686832936137 103.89 1.9617 99.671 99.181 101.14 -4.2183 -0.026461 0.00026399 NaN 32.305 146 56 4 NaN NaN NaN NaN 0 NaN NaN 0 78962000 45655 7880 30354 30374 -0.026425044730444824 TFSYRAPG 8 Unmodified _TFSYRAPG_ 0 0 0 REV__ENST00000573578.1_1_16:3335724-3336376:+|nuORF REV__ENST00000573578.1_1_16:3335724-3336376:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 300.15185546875 3 300.152099 897.434466 NaN NaN NaN NaN NaN NaN NaN 119.95 1 115.42 114.92 115.92 -4.5221 0 0 0 0.21486 1 23651 23651 0.45834 0 1 + 45656 23186 30355 30375 44961 44961 -0.018353438251438092 TFTCQASFDPS 11 Unmodified _TFTCQASFDPS_ 0 0 0 nc|ENSG00000198910|P32004-3|L1CAM;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM nc|ENSG00000198910|P32004-3|L1CAM nc|ENSG00000198910|P32004-3|L1CAM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.298828125 2 602.252971 1202.49139 NaN NaN NaN NaN NaN NaN NaN 103.4 1 99.217 98.717 99.717 -4.1861 0 0 0 0.0038097 1 20329 20329 72.968 29.196 1 45657 7521 30356 30376 44962 44962 -0.10175709121585896 TFTCQASFDPS 11 Unmodified _TFTCQASFDPS_ 0 0 0 nc|ENSG00000198910|P32004-3|L1CAM;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM nc|ENSG00000198910|P32004-3|L1CAM nc|ENSG00000198910|P32004-3|L1CAM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3004760742188 2 602.252971 1202.49139 NaN NaN NaN NaN NaN NaN NaN 103.08 1 98.762 98.262 99.262 -4.3208 0 0 0 0.017003 1 19740 19740 53.404 16.898 1 45658 7521 30356 30376 44963 44963 -0.10175709121585896 TFTCQASFDPS 11 Unmodified _TFTCQASFDPS_ 0 0 0 nc|ENSG00000198910|P32004-3|L1CAM;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM nc|ENSG00000198910|P32004-3|L1CAM nc|ENSG00000198910|P32004-3|L1CAM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2977905273438 2 602.252971 1202.49139 NaN NaN NaN NaN NaN NaN NaN 103.73 1 99.386 98.886 99.886 -4.346 0 0 0 0.19759 1 19869 19869 19.362 0.10495 1 45659 7521 30356 30376 44964 44964 -0.10175709121585896 TFTCQASFDPS 11 Unmodified _TFTCQASFDPS_ 0 0 0 nc|ENSG00000198910|P32004-3|L1CAM;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM nc|ENSG00000198910|P32004-3|L1CAM nc|ENSG00000198910|P32004-3|L1CAM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2911987304688 2 602.252971 1202.49139 NaN NaN NaN NaN NaN NaN NaN 103.8 1 99.458 98.958 99.958 -4.346 0 0 0 0.20718 1 19885 19885 17.113 1.2657 1 45660 7521 30356 30376 44965 44965 -0.10175709121585896 TFTCQASFDPS 11 Unmodified _TFTCQASFDPS_ 0 0 0 nc|ENSG00000198910|P32004-3|L1CAM;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM nc|ENSG00000198910|P32004-3|L1CAM nc|ENSG00000198910|P32004-3|L1CAM MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.29345703125 2 602.252971 1202.49139 NaN NaN NaN NaN NaN NaN NaN 102.86 1 98.841 98.341 99.341 -4.0212 0 0 0 0.0038097 1 19775 19775 72.968 29.196 1 45661 7521 30356 30376 44966 44966 -0.10175709121585896 TFTSFGEY 8 Unmodified _TFTSFGEY_ 0 0 0 ENST00000525623.1_1_11:130106686-130108390:-|nuORF;nc|ENSG00000196323|Q8NCP5|ZBTB44;ENSG00000196323|ENST00000357899|ZBTB44 ENST00000525623.1_1_11:130106686-130108390:-|nuORF ENST00000525623.1_1_11:130106686-130108390:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 476.2513427734375 2 476.208358 950.402163 NaN NaN NaN NaN NaN NaN NaN 102.2 1 97.878 97.378 98.378 -4.3208 0 0 0 0.23312 1 19566 19566 6.2058 0 1 45662 7254 30357 30377 44967 44967 -0.07502176018795126 TFVKSIKKK 9 Unmodified _TFVKSIKKK_ 0 0 0 REV__ENST00000537192.1_1_12:5480728-5487080:+|nuORF REV__ENST00000537192.1_1_12:5480728-5487080:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016906738281 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 124.14 1 124.14 123.64 124.64 0 0 0 0 0.23508 1 24474 24474 1.0715 0.83562 1 + 45663 22820 30358 30378 44968 44968 0.15527758679127146 TFYCPWGRLWL 11 Unmodified _TFYCPWGRLWL_ 0 0 0 REV__ENST00000281382.10_1_2:46808647-46819662:-|nuORF REV__ENST00000281382.10_1_2:46808647-46819662:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2412414550781 3 481.241031 1440.70126 NaN NaN NaN NaN NaN NaN NaN 153.12 1 147.86 147.36 148.36 -5.2669 0 0 0 0.22632 1 29679 29679 0.58532 0.41332 1 + 45664 20306 30359 30379 44969 44969 -0.0014600165793581255 TFYTEYAHDVL 11 Unmodified _TFYTEYAHDVL_ 0 0 0 REV__ENSG00000173208|ENST00000308666|ABCD2 REV__ENSG00000173208|ENST00000308666|ABCD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.2584228515625 3 453.546954 1357.61903 -0.3618 -0.00016409 0.59599 0.00027031 0.23419 0.00010622 453.8816539477068 19.418 0.21253 18.093 18.002 18.214 -1.3251 12 5 3 0 0 0 0.96192 1 2964 2964 1.3296 0.87513 1 646490 + 45665 18336 30360 30380 44970 44970 -0.04547245255935195 TFYTEYAHDVL 11 Unmodified _TFYTEYAHDVL_ 0 0 0 REV__ENSG00000173208|ENST00000308666|ABCD2 REV__ENSG00000173208|ENST00000308666|ABCD2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 453.546954 1357.61903 0.04524 2.0519E-05 0.54796 0.00024853 0.59321 0.00026905 453.547249862572 19.64 0.24305 18.244 18.066 18.309 -1.3966 0.15732 -0.00038122 NaN 1.3296 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 408980 + 45666 18336 30360 30380 -0.04547245255935195 TFYTEYAHDVL 11 Unmodified _TFYTEYAHDVL_ 0 0 0 REV__ENSG00000173208|ENST00000308666|ABCD2 REV__ENSG00000173208|ENST00000308666|ABCD2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 453.546954 1357.61903 -1.0271 -0.00046585 1.2989 0.00058913 0.27181 0.00012328 453.5475925402407 19.558 0.55323 17.923 17.775 18.328 -1.6351 -0.16368 0.00064058 NaN 1.3296 23 15 3 NaN NaN NaN NaN 0 NaN NaN 0 818310 + 45667 18336 30360 30380 -0.04547245255935195 TGAAHTRY 8 Unmodified _TGAAHTRY_ 0 0 0 REV__CON__Q2KJF1 REV__CON__Q2KJF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 438.7201232910156 2 438.719759 875.424964 NaN NaN NaN NaN NaN NaN NaN 52.227 1 52.227 51.727 52.727 0 0 0 0 0.23025 1 9925 9925 1.7423 1.6783 1 + + 45668 13538 30361 30381 44971 44971 -0.017731121106635328 TGAGGGAG 8 Unmodified _TGAGGGAG_ 0 0 0 REV__ENST00000469480.1_1_11:62342568-62343792:-|nuORF REV__ENST00000469480.1_1_11:62342568-62343792:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7794799804688 1 547.247066 546.239789 0.0061442 3.3624E-06 2.7112 0.0014837 2.7173 0.0014871 547.2510758997354 78.555 0.28583 74.75 74.663 74.949 -3.8048 9 7 2 0 0 0 1.0273 1 14926 14926 0 0 1 1116200 + 45669 16993 30362 30382 44972 44972 -0.051480949102824525 TGAHHGPG 8 Unmodified _TGAHHGPG_ 0 0 0 IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant;ENSG00000163395|ENST00000335211|IGFN1;IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 367.1737365722656 2 367.172444 732.330336 NaN NaN NaN NaN NaN NaN NaN 123.61 1 119.04 118.54 119.54 -4.5757 0 0 0 0.21486 1 24368 24368 2.5775 0 1 45670 5423 30363 30383 44973 44973 -0.046536258619880755 TGAIQFEGP 9 Unmodified _TGAIQFEGP_ 0 0 0 REV__ADAMTS17|p.R1041Afs*5|1|0.5|ENSG00000140470|chr15:99976051-99976051|G/-|frameshift_variant REV__ADAMTS17|p.R1041Afs*5|1|0.5|ENSG00000140470|chr15:99976051-99976051|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2310791015625 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 36.942 1 34.473 33.973 34.973 -2.4688 0 0 0 0.23508 1 6821 6821 10.824 0 1 + 45671 12945 30364 30384 44974 44974 -0.01778780890560938 TGAKASSVT 9 Unmodified _TGAKASSVT_ 0 0 0 REV__ENSG00000205592|ENST00000454784|MUC19 REV__ENSG00000205592|ENST00000454784|MUC19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.10760498046875 2 411.2218 820.429047 NaN NaN NaN NaN NaN NaN NaN 48.325 1 45.456 44.956 45.956 -2.869 0 0 0 0.23508 1 9140 9140 7.9102 0 1 + 45672 19595 30365 30385 44975 44975 0.01164932592371315 TGAKGAKG 8 Unmodified _TGAKGAKG_ 0 0 0 COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant;ENSG00000196739|ENST00000356083|COL27A1;nc|ENSG00000196739|Q8IZC6-2|COL27A1 COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant COL27A1|p.V1419Sfs*148|1|0.14|ENSG00000196739|chr9:114290101-114290101|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.2576599121094 2 345.20067 688.386788 NaN NaN NaN NaN NaN NaN NaN 63.779 1 60.782 60.282 61.282 -2.9975 0 0 0 0.21486 1 12329 12329 5.2307 0 1 45673 625 30366 30386 44976 44976 0.03013001974670715 TGAKPSATGYL 11 Unmodified _TGAKPSATGYL_ 0 0 0 nc|ENSG00000011451|O95785-2|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ nc|ENSG00000011451|O95785-2|WIZ nc|ENSG00000011451|O95785-2|WIZ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.282470703125 2 533.282389 1064.55022 0.055047 2.9355E-05 -0.38666 -0.0002062 -0.33161 -0.00017684 533.2821746204484 97.397 2.6122 93.477 92.023 94.636 -3.9194 213 75 4 0 0 0 0.57511 1 18872 18872 19.362 0.98885 1 79282000 45674 1079 30367 30387 44977 44977 0.020531352350417365 TGAPPLPP 8 Unmodified _TGAPPLPP_ 0 0 0 ENSG00000131398|ENST00000477616|KCNC3 ENSG00000131398|ENST00000477616|KCNC3 ENSG00000131398|ENST00000477616|KCNC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.212646484375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 48.22 1 45.278 44.778 45.778 -2.9421 0 0 0 0.21486 1 8800 8800 9.3474 0 1 45675 3675 30368 30388 44978 44978 0.02767056777236121 TGAPSEKP 8 Unmodified _TGAPSEKP_ 0 0 0 REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.2911682128906 2 393.703243 785.391933 -0.63097 -0.00024842 0.60939 0.00023992 -0.021582 -8.497E-06 393.70335032896577 36.224 0.5311 33.83 33.593 34.124 -2.3938 23 14 2 0 0 0 0.99494 1 6718 6718 2.0598 0.21551 1 1265100 + 45676 13211 30369 30389 44979 44979 -0.009347389533786554 TGARTRLPPP 10 Unmodified _TGARTRLPPP_ 0 0 0 ENST00000254190.3_1_15:101791750-101792119:-|nuORF ENST00000254190.3_1_15:101791750-101792119:-|nuORF ENST00000254190.3_1_15:101791750-101792119:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2621459960938 2 533.311815 1064.60908 0.54172 0.00028891 -0.36305 -0.00019362 0.17867 9.5289E-05 533.3115738697659 21.439 0.42555 19.964 19.735 20.16 -1.4742 29 11 4 0 0 0 0.89521 1 3666 3666 3.5965 0 1 3951400 45677 8243 30370 30390 44980 44980 0.07935656320023554 TGARVVDI 8 Unmodified _TGARVVDI_ 0 0 0 REV__ENSG00000104689|ENST00000221132|TNFRSF10A REV__ENSG00000104689|ENST00000221132|TNFRSF10A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.2445373535156 2 415.74016 829.465767 -0.47692 -0.00019827 -0.012305 -5.1155E-06 -0.48922 -0.00020339 415.7403832040009 82.752 0.93945 79.053 78.515 79.455 -3.6985 57 26 3 0 0 0 0.98792 1 15713 15713 9.3474 0 1 3879300 + 45678 14933 30371 30391 44981 44981 0.044212292089468974 TGARYLVTY 9 Unmodified _TGARYLVTY_ 0 0 0 REV__nc|ENSG00000007516|O94812-7|BAIAP3 REV__nc|ENSG00000007516|O94812-7|BAIAP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2785034179688 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 124.93 1 120.16 119.66 120.66 -4.7681 0 0 0 0.23508 1 23990 23990 12.532 2.3482 1 + 45679 13889 30372 30392 44982 44982 0.025174564432290936 TGATTGSP 8 Unmodified _TGATTGSP_ 0 0 0 REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant REV__DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 346.18194580078125 2 346.166493 690.318434 NaN NaN NaN NaN NaN NaN NaN 22.335 1 20.547 20.047 21.047 -1.7886 0 0 0 0.23664 1 3541 3541 3.2813 0 1 + 45680 13642 30373 30393 44983 44983 -0.03911287395851559 TGAVTALS 8 Unmodified _TGAVTALS_ 0 0 0 REV__EPHA2|p.E241*|1|0.21|ENSG00000142627|chr1:16148481-16148482|-/C|frameshift_variant REV__EPHA2|p.E241*|1|0.21|ENSG00000142627|chr1:16148481-16148482|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2021179199219 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 114.97 1 114.97 114.47 115.47 0 0 0 0 0.21486 1 22620 22620 2.3027 0 1 + 45681 16682 30374 30394 44984 44984 0.015661625349594033 TGAWFLIIAPD 11 Unmodified _TGAWFLIIAPD_ 0 0 0 ENST00000254942.7_1_16:69390540-69390804:-|nuORF ENST00000254942.7_1_16:69390540-69390804:-|nuORF ENST00000254942.7_1_16:69390540-69390804:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2816772460938 2 602.324057 1202.63356 NaN NaN NaN NaN NaN NaN NaN 79.934 1 76.258 75.758 76.758 -3.676 0 0 0 0.23018 1 15234 15234 8.1555 1.4324 1 45682 8248 30375 30395 44985 44985 0.04034871682915764 TGAWVHPLRS 10 Unmodified _TGAWVHPLRS_ 0 0 0 REV__ENST00000329082.11_1_15:93588006-93588219:-|nuORF REV__ENST00000329082.11_1_15:93588006-93588219:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.204833984375 3 375.205085 1122.59343 NaN NaN NaN NaN NaN NaN NaN 38.934 1 36.529 36.029 37.029 -2.4049 0 0 0 0.22588 1 6941 6941 5.4027 1.4583 1 + 45683 20601 30376 30396 44986 44986 0.03703369802974521 TGCCCCCCASQ 11 Unmodified _TGCCCCCCASQ_ 0 0 0 ENST00000562592.5_1_16:57770947-57775680:+|nuORF ENST00000562592.5_1_16:57770947-57775680:+|nuORF ENST00000562592.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.142578125 2 541.138543 1080.26253 NaN NaN NaN NaN NaN NaN NaN 163.38 1 163.38 162.88 163.88 0 0 0 0 0.22632 1 32928 32928 0 0 1 45684 11318 30377 30397 44987 44987 -0.2743873054917003 TGCCCCCCASQ 11 Unmodified _TGCCCCCCASQ_ 0 0 0 ENST00000562592.5_1_16:57770947-57775680:+|nuORF ENST00000562592.5_1_16:57770947-57775680:+|nuORF ENST00000562592.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2681274414062 2 541.138543 1080.26253 NaN NaN NaN NaN NaN NaN NaN 164.16 1 159.37 158.87 159.87 -4.7898 0 0 0 0.23698 1 32784 32784 0 0 1 45685 11318 30377 30397 44988 44988 -0.2743873054917003 TGCCCCCCASQ 11 Unmodified _TGCCCCCCASQ_ 0 0 0 ENST00000562592.5_1_16:57770947-57775680:+|nuORF ENST00000562592.5_1_16:57770947-57775680:+|nuORF ENST00000562592.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2748413085938 2 541.138543 1080.26253 NaN NaN NaN NaN NaN NaN NaN 77.493 1 73.834 73.334 74.334 -3.6588 0 0 0 0.22632 1 14756 14756 0 0 1 45686 11318 30377 30397 44989 44989 -0.2743873054917003 TGCCCCCCASQ 11 Unmodified _TGCCCCCCASQ_ 0 0 0 ENST00000562592.5_1_16:57770947-57775680:+|nuORF ENST00000562592.5_1_16:57770947-57775680:+|nuORF ENST00000562592.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2579956054688 2 541.138543 1080.26253 NaN NaN NaN NaN NaN NaN NaN 159 1 153.72 153.22 154.22 -5.2712 0 0 0 0.23698 1 30850 30850 0 0 1 45687 11318 30377 30397 44990 44990 -0.2743873054917003 TGCCCCCCGRD 11 Unmodified _TGCCCCCCGRD_ 0 0 0 ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2050476074219 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 38.929 1 36.487 35.987 36.987 -2.4419 0 0 0 0.23698 1 6941 6941 0.45452 0.45452 1 45688 11370 30378 30398 44991 44991 -0.2719192580057097 TGCCCCCCGRD 11 Unmodified _TGCCCCCCGRD_ 0 0 0 ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2124938964844 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 13.265 1 12.144 11.644 12.644 -1.1206 0 0 0 0.22632 1 1661 1661 0 0 1 45689 11370 30378 30398 44992 44992 -0.2719192580057097 TGCCCCCCGRD 11 Unmodified _TGCCCCCCGRD_ 0 0 0 ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2206726074219 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 13.553 1 12.342 11.842 12.842 -1.2106 0 0 0 0.23698 1 1724 1724 0 0 1 45690 11370 30378 30398 44993 44993 -0.2719192580057097 TGCCCCCCGRD 11 Unmodified _TGCCCCCCGRD_ 0 0 0 ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2108459472656 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 13.803 1 12.592 12.092 13.092 -1.2106 0 0 0 0.22632 1 1778 1778 0 0 1 45691 11370 30378 30398 44994 44994 -0.2719192580057097 TGCCCCCCGRD 11 Unmodified _TGCCCCCCGRD_ 0 0 0 ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.1014099121094 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 13.998 1 12.787 12.287 13.287 -1.2106 0 0 0 0.23698 1 1819 1819 0 0 1 45692 11370 30378 30398 44995 44995 -0.2719192580057097 TGCCCCCCGRD 11 Unmodified _TGCCCCCCGRD_ 0 0 0 ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2166748046875 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 14.275 1 13.064 12.564 13.564 -1.2106 0 0 0 0.22632 1 1878 1878 0 0 1 45693 11370 30378 30398 44996 44996 -0.2719192580057097 TGCCCCCCGRD 11 Unmodified _TGCCCCCCGRD_ 0 0 0 ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF ENST00000566726.5_1_16:57770947-57775680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2102966308594 3 375.102054 1122.28433 NaN NaN NaN NaN NaN NaN NaN 14.854 1 13.643 13.143 14.143 -1.2106 0 0 0 0.22632 1 2003 2003 0 0 1 45694 11370 30378 30398 44997 44997 -0.2719192580057097 TGDDSHPDHYV 11 Unmodified _TGDDSHPDHYV_ 0 0 0 REV__ENSG00000008086|ENST00000623535|CDKL5 REV__ENSG00000008086|ENST00000623535|CDKL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7560424804688 2 621.754724 1241.49489 0.42621 0.000265 -0.3498 -0.00021749 0.076413 4.751E-05 621.7546816205776 23.638 0.31234 23.638 23.48 23.792 0 18 8 3 0 0 0 0.68099 1 4058 4058 13.042 3.6593 1 934430 + 45695 13896 30379 30399 44998 44998 -0.11619323023387551 TGDDSHPDHYV 11 Unmodified _TGDDSHPDHYV_ 0 0 0 REV__ENSG00000008086|ENST00000623535|CDKL5 REV__ENSG00000008086|ENST00000623535|CDKL5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7543334960938 2 621.754724 1241.49489 0.08541 5.3104E-05 -0.018387 -1.1432E-05 0.067023 4.1672E-05 621.7546625275086 25.56 0.41827 23.706 23.465 23.883 -1.8534 27 11 3 0 0 0 0.78434 1 4183 4183 5.7319 0.83484 1 1027700 + 45696 13896 30379 30399 44999 44999 -0.11619323023387551 TGDDSHPDHYV 11 Unmodified _TGDDSHPDHYV_ 0 0 0 REV__ENSG00000008086|ENST00000623535|CDKL5 REV__ENSG00000008086|ENST00000623535|CDKL5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 621.754724 1241.49489 0.42621 0.000265 -0.3498 -0.00021749 0.076413 4.751E-05 621.7546816205776 23.638 0.31234 23.638 23.48 23.792 0 -0.066398 -0.00022344 NaN 13.042 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 934430 + 45697 13896 30379 30399 -0.11619323023387551 TGDDSHPDHYV 11 Unmodified _TGDDSHPDHYV_ 0 0 0 REV__ENSG00000008086|ENST00000623535|CDKL5 REV__ENSG00000008086|ENST00000623535|CDKL5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 621.754724 1241.49489 0.31229 0.00019417 -0.19496 -0.00012122 0.11733 7.2949E-05 621.7545782347316 25.303 0.41862 23.769 23.574 23.992 -1.5342 0.064613 -3.0894E-05 NaN 13.042 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1979700 + 45698 13896 30379 30399 -0.11619323023387551 TGDQLLFEY 9 Unmodified _TGDQLLFEY_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7896118164062 2 543.261122 1084.50769 0.33281 0.0001808 0.18874 0.00010254 0.52155 0.00028334 543.2611860491558 125.54 1.202 125.54 124.9 126.1 0 64 33 3 0 0 0 0.66316 1 24853 24853 8.7454 0.15213 1 14297000 45699 1581 30380 30400 45000 45000 -0.031182598931764005 TGDWIIHD 8 Unmodified _TGDWIIHD_ 0 0 0 REV__ENSG00000160051|ENST00000291358|IQCC REV__ENSG00000160051|ENST00000291358|IQCC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.727783203125 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 43.445 1 43.445 42.945 43.945 0 0 0 0 0.20896 1 8137 8137 18.135 1.9859 1 + 45700 17390 30381 30401 45001 45001 -0.03955665033333844 TGDWIIHD 8 Unmodified _TGDWIIHD_ 0 0 0 REV__ENSG00000160051|ENST00000291358|IQCC REV__ENSG00000160051|ENST00000291358|IQCC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74127197265625 2 478.727249 955.439946 -0.023616 -1.1305E-05 -0.92363 -0.00044216 -0.94724 -0.00045347 478.72695698739716 46.592 0.62304 43.751 43.486 44.109 -2.8409 29 17 3 0 0 0 0.74398 1 8758 8758 7.9102 1.187 1 1037800 + 45701 17390 30381 30401 45002 45002 -0.03955665033333844 TGEAAGGG 8 Unmodified _TGEAAGGG_ 0 0 0 ENST00000260746.5_1_10:104465169-104474087:-|nuORF ENST00000260746.5_1_10:104465169-104474087:-|nuORF ENST00000260746.5_1_10:104465169-104474087:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1640930175781 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 150.98 1 145.8 145.3 146.3 -5.1759 0 0 0 0.2396 1 29265 29265 0.12286 0 1 45702 8288 30382 30402 45003 45003 -0.06348129601428809 TGEHKEAGQ 9 Unmodified _TGEHKEAGQ_ 0 0 0 REV__CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant REV__CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7230224609375 2 478.725238 955.435923 NaN NaN NaN NaN NaN NaN NaN 105.42 1 101.05 100.55 101.55 -4.3764 0 0 0 0.21844 1 20208 20208 18.146 0 1 + 45703 13462 30383 30403 45004 45004 -0.043577545270409246 TGEKMSDIY 9 Unmodified _TGEKMSDIY_ 0 0 0 ENSG00000135636|ENST00000410020|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-7|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923-3|DYSF;DYSF|p.F1960Lfs*6|1|0.23|ENSG00000135636|chr2:71679165-71679165|T/-|frameshift_variant;nc|ENSG00000135636|O75923-15|DYSF ENSG00000135636|ENST00000410020|DYSF ENSG00000135636|ENST00000410020|DYSF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2642211914062 2 522.239332 1042.46411 NaN NaN NaN NaN NaN NaN NaN 160.65 1 155.86 155.36 156.36 -4.7952 0 0 0 0.21848 1 31949 31949 18.135 1.1927 1 45704 903 30384 30404 45005 45005 -0.055421926619601436 TGENSFVHS 9 Unmodified _TGENSFVHS_ 0 0 0 ENST00000480188.1_1_9:123719518-123724970:-|nuORF ENST00000480188.1_1_9:123719518-123724970:-|nuORF ENST00000480188.1_1_9:123719518-123724970:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 489.21795654296875 2 489.219788 976.425024 NaN NaN NaN NaN NaN NaN NaN 97.983 1 93.714 93.214 94.214 -4.2692 0 0 0 0.18272 1 18725 18725 0.37959 0.12811 1 45705 10352 30385 30405 45006 45006 -0.0641315690132842 TGESPTPVTA 10 Unmodified _TGESPTPVTA_ 0 0 0 REV__ENSG00000277258|ENST00000620225|PCGF2 REV__ENSG00000277258|ENST00000620225|PCGF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.251708984375 2 480.237647 958.460741 -0.1127 -5.4125E-05 0.48374 0.00023231 0.37104 0.00017819 480.23781131259335 44.068 0.83871 41.321 40.941 41.779 -2.7475 60 23 4 0 0 0 0.51199 1 8006 8006 24.021 0 1 7797800 + 45706 19940 30386 30406 45007 45007 -0.020151194443201348 TGGGGGAG 8 Unmodified _TGGGGGAG_ 0 0 0 ENSG00000182759|ENST00000333480|MAFA ENSG00000182759|ENST00000333480|MAFA ENSG00000182759|ENST00000333480|MAFA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2684326171875 1 533.231416 532.224139 0.2727 0.00014541 2.2343 0.0011914 2.507 0.0013368 533.2296501815171 135.3 0.14365 130.47 130.38 130.52 -4.8307 5 3 2 0 0 0 8448 1 26049 26049 0 0 1 516510 45707 6810 30387 30407 45008 45008 -0.060683814273261305 TGGLSSLG 8 Unmodified _TGGLSSLG_ 0 0 0 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;ENSG00000163623|ENST00000295886|NKX6-1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant;REV__ENSG00000134760|ENST00000257192|DSG1 NKX6-1|p.E277Vfs*66|1|0.12|ENSG00000163623|chr4:84495682-84495685|CTCT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 346.185791015625 2 346.184686 690.354819 NaN NaN NaN NaN NaN NaN NaN 72.154 1 68.616 68.116 69.116 -3.5385 0 0 0 0.23664 1 13688 13688 3.2813 0 1 45708 5448;16225 30388 30408 45009 45009 -0.002744104991279528 TGGRFATLP 9 Unmodified _TGGRFATLP_ 0 0 0 sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1;sp|F5HEN8|HELI_HCMVMDNAreplicationhelicaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=HELIPE=3SV=1 sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1 sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23907470703125 2 460.253434 918.492316 NaN NaN NaN NaN NaN NaN NaN 52.021 1 48.969 48.469 49.469 -3.0517 0 0 0 0.23508 1 9594 9594 10.074 0 1 45709 25735 30389 30409 45010 45010 0.029809181002860896 TGGSPSPQFVY 11 Unmodified _TGGSPSPQFVY_ 0 0 0 REV__nc|ENSG00000134668|Q6ZMY3-5|SPOCD1 REV__nc|ENSG00000134668|Q6ZMY3-5|SPOCD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21038818359375 3 380.517106 1138.52949 0.012084 4.5983E-06 0.15322 5.8301E-05 0.1653 6.29E-05 380.5170974120101 48.277 0.66245 45.335 44.937 45.599 -2.9421 45 18 3 0 0 0 0.78947 1 8831 8831 5.0475 1.1712 1 2623400 + 45710 24047 30390 30410 45011 45011 -0.03423455144616128 TGIDYPVRAA 10 Unmodified _TGIDYPVRAA_ 0 0 0 ENST00000264192.7_1_2:158272517-158272613:-|nuORF ENST00000264192.7_1_2:158272517-158272613:-|nuORF ENST00000264192.7_1_2:158272517-158272613:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2871704101562 2 531.782556 1061.55056 0.082529 4.3887E-05 0.053087 2.8231E-05 0.13562 7.2118E-05 531.7825542921472 117.89 1.1598 117.89 117.38 118.54 0 107 32 4 0 0 0 0.57807 2 23272 23181;23272 20.415 3.3016 1 123050000 45711 8334 30391 30411 45012;45013 45013 0.022245549549097632 TGIEGGGWFR 10 Unmodified _TGIEGGGWFR_ 0 0 0 REV__ENST00000296978.3_1_6:130686962-130687400:+|nuORF REV__ENST00000296978.3_1_6:130686962-130687400:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.5212707519531 3 360.513807 1078.51959 -0.21478 -7.7431E-05 0.15996 5.7669E-05 -0.054818 -1.9763E-05 360.51383838502784 23.483 0.97284 23.483 22.96 23.933 0 71 27 5 0 0 0 0.47611 1 3945 3945 6.6304 6.6304 1 29011000 + 45712 20376 30392 30412 45014 45014 -0.01652598359351032 TGIWTTWP 8 Unmodified _TGIWTTWP_ 0 0 0 REV__ENST00000590427.1_1_2:223183467-223206961:+|nuORF REV__ENST00000590427.1_1_2:223183467-223206961:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24285888671875 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 55.728 1 52.844 52.344 53.344 -2.8837 0 0 0 0.21486 1 10668 10668 12.532 0.89125 1 + 45713 23321 30393 30413 45015 45015 -0.011298866483002712 TGIWTTWP 8 Unmodified _TGIWTTWP_ 0 0 0 REV__ENST00000590427.1_1_2:223183467-223206961:+|nuORF REV__ENST00000590427.1_1_2:223183467-223206961:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24273681640625 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 56.054 1 52.878 52.378 53.378 -3.1761 0 0 0 0.21486 1 10420 10420 8.5933 0 1 + 45714 23321 30393 30413 45016 45016 -0.011298866483002712 TGKRICEI 8 Unmodified _TGKRICEI_ 0 0 0 ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3 ENSG00000136636|ENST00000259154|KCTD3 ENSG00000136636|ENST00000259154|KCTD3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 307.1739501953125 3 307.172505 918.495686 NaN NaN NaN NaN NaN NaN NaN 115.01 1 110.69 110.19 111.19 -4.3136 0 0 0 0.21486 1 22143 22143 1.6526 0 1 45715 4025 30394 30414 45017 45017 0.03317844882644749 TGKTLFKGK 9 Unmodified _TGKTLFKGK_ 0 0 0 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2698059082031 2 490.300384 978.586216 NaN NaN NaN NaN NaN NaN NaN 138.96 1 134.01 133.51 134.51 -4.952 0 0 0 0.19646 1 26730 26730 0.029283 0 1 45716 5100 30395 30415 45018 45018 0.0960663720256889 TGKYTVVPD 9 Unmodified _TGKYTVVPD_ 0 0 0 tr|U7SYF9|U7SYF9_FUSNUToxinHicAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00849PE=3SV=1 tr|U7SYF9|U7SYF9_FUSNUToxinHicAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00849PE=3SV=1 tr|U7SYF9|U7SYF9_FUSNUToxinHicAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00849PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2584228515625 2 490.258382 978.502212 0.47722 0.00023396 0.16827 8.2494E-05 0.64548 0.00031645 490.2583573887621 70.132 0.56149 66.552 66.276 66.838 -3.5798 21 15 2 0 0 0 0.46796 1 13189 13189 21.59 0.053175 1 1342400 45717 26279 30396 30416 45019 45019 0.012100613149868877 TGLPGVQGPPG 11 Unmodified _TGLPGVQGPPG_ 0 0 0 ENST00000486080.5_1_6:70926602-70955360:-|nuORF;ENST00000489611.5_1_6:70926602-70990065:-|nuORF;nc|ENSG00000112280|P20849-2|COL9A1;ENSG00000112280|ENST00000357250|COL9A1 ENST00000486080.5_1_6:70926602-70955360:-|nuORF ENST00000486080.5_1_6:70926602-70955360:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2643127441406 2 490.263999 978.513445 0.064146 3.1448E-05 0.10466 5.1312E-05 0.16881 8.2761E-05 490.2640316435626 59.279 1.7152 56.368 55.784 57.5 -2.9105 129 48 4 0 0 0 0.081879 1 11337 11337 1.2503 0 1 42586000 45718 2680 30397 30417 45020 45020 0.02332883409144415 TGLPGVQGPPG 11 Unmodified _TGLPGVQGPPG_ 0 0 0 ENST00000486080.5_1_6:70926602-70955360:-|nuORF;ENST00000489611.5_1_6:70926602-70990065:-|nuORF;nc|ENSG00000112280|P20849-2|COL9A1;ENSG00000112280|ENST00000357250|COL9A1 ENST00000486080.5_1_6:70926602-70955360:-|nuORF ENST00000486080.5_1_6:70926602-70955360:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.263916015625 2 490.263999 978.513445 0.17497 8.5784E-05 0.35871 0.00017586 0.53368 0.00026164 490.26396477223466 59.697 1.4825 56.384 55.742 57.224 -3.3139 148 41 6 0 0 0 0.41843 1 10999 10999 0.65807 0 1 37594000 45719 2680 30397 30417 45021 45021 0.02332883409144415 TGLSGLLGG 9 Unmodified _TGLSGLLGG_ 0 0 0 ENSG00000124143|ENST00000373345|ARHGAP40;ARHGAP40|p.K441Sfs*20|1|0.15|ENSG00000124143|chr20:38643815-38643815|C/-|frameshift_variant ENSG00000124143|ENST00000373345|ARHGAP40 ENSG00000124143|ENST00000373345|ARHGAP40 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7215576171875 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 42.704 1 39.985 39.485 40.485 -2.7191 0 0 0 0.19649 1 7993 7993 1.2148 0 1 45720 3292 30398 30418 45022 45022 0.03254137943349633 TGMAGGMP 8 Unmodified _TGMAGGMP_ 0 0 0 nc|ENSG00000183495|Q96L91-3|EP400 nc|ENSG00000183495|Q96L91-3|EP400 nc|ENSG00000183495|Q96L91-3|EP400 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.15399169921875 2 361.154017 720.293481 NaN NaN NaN NaN NaN NaN NaN 136.56 1 131.73 131.23 132.23 -4.8307 0 0 0 0.21486 1 26299 26299 2.5775 0 1 45721 12505 30399 30419 45023 45023 -0.07785381794440127 TGNAPGGGG 9 Unmodified _TGNAPGGGG_ 0 0 0 REV__ENSG00000116991|ENST00000674635|SIPA1L2 REV__ENSG00000116991|ENST00000674635|SIPA1L2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.2872314453125 2 344.15646 686.298367 NaN NaN NaN NaN NaN NaN NaN 4.6547 1 4.6547 4.1547 5.1547 0 0 0 0 0.23508 1 129 129 0 0 1 + 45722 15510 30400 30420 45024 45024 -0.057330383357793835 TGPAAGPA 8 Unmodified _TGPAAGPA_ 0 0 0 ENST00000466256.6_1_1:17066814-17263353:+|nuORF ENST00000466256.6_1_1:17066814-17263353:+|nuORF ENST00000466256.6_1_1:17066814-17263353:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.1396789550781 2 321.166296 640.31804 NaN NaN NaN NaN NaN NaN NaN 24.573 1 24.573 24.073 25.073 0 0 0 0 0.2396 1 4238 4238 0 0 1 45723 10132 30401 30421 45025 45025 -0.016506623250734265 TGPKRCPD 8 Unmodified _TGPKRCPD_ 0 0 0 REV__ENST00000315930.10_3_X:137793708-137793795:-|nuORF REV__ENST00000315930.10_3_X:137793708-137793795:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2168884277344 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 96.849 1 92.615 92.115 93.115 -4.2348 0 0 0 0.21486 1 18495 18495 10.824 3.5347 1 + 45724 20521 30402 30422 45026 45026 -0.023875877026057424 TGPRPHGGK 9 Unmodified _TGPRPHGGK_ 0 0 0 ENST00000565022.1_1_16:31212908-31213633:-|nuORF ENST00000565022.1_1_16:31212908-31213633:-|nuORF ENST00000565022.1_1_16:31212908-31213633:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7478942871094 2 453.74885 905.483148 NaN NaN NaN NaN NaN NaN NaN 48.782 1 45.913 45.413 46.413 -2.869 0 0 0 0.21065 1 9232 9232 20.454 2.3186 1 45725 11353 30403 30423 45027 45027 0.02662569534618342 TGPTEEKSEKV 11 Unmodified _TGPTEEKSEKV_ 0 0 0 REV__nc|ENSG00000175416|P09497-2|CLTB REV__nc|ENSG00000175416|P09497-2|CLTB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2728881835938 2 602.806425 1203.5983 0.50588 0.00030495 -0.06632 -3.9978E-05 0.43956 0.00026497 602.8063943843867 63.223 0.57568 59.807 59.433 60.009 -3.4158 29 15 3 0 0 0 0.95337 1 11774 11774 5.7319 0 1 2257200 + 45726 18475 30404 30424 45028 45028 0.004641643644163196 TGQASQPRA 9 Unmodified _TGQASQPRA_ 0 0 0 ENST00000400762.7_1_4:1198785-1202445:-|nuORF ENST00000400762.7_1_4:1198785-1202445:-|nuORF ENST00000400762.7_1_4:1198785-1202445:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2340087890625 2 458.235773 914.456993 NaN NaN NaN NaN NaN NaN NaN 26.702 1 26.702 26.202 27.202 0 0 0 0 0.12123 1 4684 4684 34.402 2.2848 1 45727 9509 30405 30425 45029 45029 -0.0036574442752908 TGQHQVRM 8 Unmodified _TGQHQVRM_ 0 0 0 VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant;nc|ENSG00000173511|P49765-2|VEGFB;ENSG00000173511|ENST00000309422|VEGFB VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7400207519531 2 478.740168 955.465783 NaN NaN NaN NaN NaN NaN NaN 8.4892 1 7.695 7.195 8.195 -0.79424 0 0 0 0.21486 1 886 886 0.69038 0 1 45728 6297 30406 30426 45030 45030 -0.013730940626942356 TGQLYPLLY 9 Unmodified _TGQLYPLLY_ 0 0 0 REV__ZMYM6|p.I637Yfs*14|1|0.36|ENSG00000163867|chr1:35005177-35005177|T/-|frameshift_variant REV__ZMYM6|p.I637Yfs*14|1|0.36|ENSG00000163867|chr1:35005177-35005177|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.0750732421875 3 356.530576 1066.5699 -0.53017 -0.00018902 -2.532 -0.00090275 -3.0622 -0.0010918 356.5298001093062 39.895 0.45023 37.346 37.106 37.556 -2.5491 15 11 2 0 0 0 0.8825 1 7403 7403 1.0715 0 1 557000 + 45729 25566 30407 30427 45031 45031 0.039275112458199146 TGQLYPLLY 9 Unmodified _TGQLYPLLY_ 0 0 0 REV__ZMYM6|p.I637Yfs*14|1|0.36|ENSG00000163867|chr1:35005177-35005177|T/-|frameshift_variant REV__ZMYM6|p.I637Yfs*14|1|0.36|ENSG00000163867|chr1:35005177-35005177|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 356.530576 1066.5699 -0.19206 -6.8474E-05 -4.4015 -0.0015693 -4.5936 -0.0016377 356.5290928983271 37.318 0.2467 37.318 37.227 37.473 0 -0.023023 -0.00086358 NaN 1.0715 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 688710 + 45730 25566 30407 30427 0.039275112458199146 TGQLYPLLY 9 Unmodified _TGQLYPLLY_ 0 0 0 REV__ZMYM6|p.I637Yfs*14|1|0.36|ENSG00000163867|chr1:35005177-35005177|T/-|frameshift_variant REV__ZMYM6|p.I637Yfs*14|1|0.36|ENSG00000163867|chr1:35005177-35005177|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 356.530576 1066.5699 0.010099 3.6005E-06 -3.3504 -0.0011945 -3.3403 -0.0011909 356.86378516524206 39.898 0.35432 37.359 37.109 37.463 -2.5398 0.017816 0.00026066 NaN 1.0715 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 572890 + 45731 25566 30407 30427 0.039275112458199146 TGRAGVLR 8 Unmodified _TGRAGVLR_ 0 0 0 REV__ENST00000331343.11_1_21:46685399-46685879:-|nuORF REV__ENST00000331343.11_1_21:46685399-46685879:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.25286865234375 2 415.253769 828.492984 NaN NaN NaN NaN NaN NaN NaN 82.47 1 78.862 78.362 79.362 -3.6079 0 0 0 0.17894 1 16118 16118 32.117 0 1 + 45732 20614 30408 30428 45032 45032 0.07187757539975337 TGRLPAGRGY 10 Unmodified _TGRLPAGRGY_ 0 0 0 nc|ENSG00000008130|O95544-3|NADK nc|ENSG00000008130|O95544-3|NADK nc|ENSG00000008130|O95544-3|NADK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6941528320312 2 524.28834 1046.56213 0.40736 0.00021358 -1.5286 -0.0008014 -1.1212 -0.00058783 524.2874735568618 106.41 0.73141 106.41 105.88 106.61 0 28 20 2 0 0 0 0.75233 1 20881 20881 12.241 0 1 1686700 45733 12206 30409 30429 45033 45033 0.04070796768905893 TGRRGGSIK 9 Unmodified _TGRRGGSIK_ 0 0 0 ENST00000319481.7_1_18:21743105-21745110:-|nuORF ENST00000319481.7_1_18:21743105-21745110:-|nuORF ENST00000319481.7_1_18:21743105-21745110:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.19744873046875 3 311.185914 930.535912 NaN NaN NaN NaN NaN NaN NaN 17.464 1 15.949 15.449 16.449 -1.5148 0 0 0 0.23508 1 2537 2537 0 0 1 45734 8702 30410 30430 45034 45034 0.06786527597432723 TGRRGGSIK 9 Unmodified _TGRRGGSIK_ 0 0 0 ENST00000319481.7_1_18:21743105-21745110:-|nuORF ENST00000319481.7_1_18:21743105-21745110:-|nuORF ENST00000319481.7_1_18:21743105-21745110:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.23175048828125 3 311.185914 930.535912 NaN NaN NaN NaN NaN NaN NaN 17.568 1 16.053 15.553 16.553 -1.5148 0 0 0 0.23508 1 2558 2558 0 0 1 45735 8702 30410 30430 45035 45035 0.06786527597432723 TGRTCKPPP 9 Unmodified _TGRTCKPPP_ 0 0 0 TBC1D12|p.K750Nfs*9|2|0.34|ENSG00000108239|chr10:94531446-94531446|A/-|frameshift_variant;ENSG00000108239|ENST00000225235|TBC1D12 TBC1D12|p.K750Nfs*9|2|0.34|ENSG00000108239|chr10:94531446-94531446|A/-|frameshift_variant TBC1D12|p.K750Nfs*9|2|0.34|ENSG00000108239|chr10:94531446-94531446|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74212646484375 2 478.752744 955.490935 NaN NaN NaN NaN NaN NaN NaN 33.88 1 31.733 31.233 32.233 -2.1468 0 0 0 0.23508 1 5923 5923 10.824 1.4765 1 45736 2463 30411 30431 45036 45036 0.011409607398718435 TGRVTEEKPY 10 Unmodified _TGRVTEEKPY_ 0 0 0 ENST00000485065.1_1_10:116698192-116719580:+|nuORF;ENSG00000165832|ENST00000298746|TRUB1 ENST00000485065.1_1_10:116698192-116719580:+|nuORF ENST00000485065.1_1_10:116698192-116719580:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.27099609375 2 590.303852 1178.59315 NaN NaN NaN NaN NaN NaN NaN 102.97 1 98.783 98.283 99.283 -4.1861 0 0 0 0.22583 1 20242 20242 13.906 0.39817 1 45737 5667 30412 30432 45037 45037 0.010999052924717034 TGRYEFSP 8 Unmodified _TGRYEFSP_ 0 0 0 REV__MON2|p.A444S|1|0.3|ENSG00000061987|chr12:62526032-62526032|G/T|missense_variant REV__MON2|p.A444S|1|0.3|ENSG00000061987|chr12:62526032-62526032|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72662353515625 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 178.64 1 178.64 178.14 179.14 0 0 0 0 0.21486 1 37004 37004 1.8442 0.36234 1 + 45738 23872 30413 30433 45038 45038 -0.03955665033333844 TGRYPHPE 8 Unmodified _TGRYPHPE_ 0 0 0 REV__NAP1L2|p.D316E|1|0.46|ENSG00000186462|chrX:73213545-73213545|A/T|missense_variant REV__NAP1L2|p.D316E|1|0.46|ENSG00000186462|chrX:73213545-73213545|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73193359375 2 478.732866 955.451179 NaN NaN NaN NaN NaN NaN NaN 105.66 1 101.28 100.78 101.78 -4.3764 0 0 0 0.22665 1 20257 20257 0.68139 0 1 + 45739 23917 30414 30434 45039 45039 -0.02832842939199054 TGSARRGG 8 Unmodified _TGSARRGG_ 0 0 0 REV__nc|ENSG00000149091|Q13574-1|DGKZ REV__nc|ENSG00000149091|Q13574-1|DGKZ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2089538574219 2 381.204276 760.393999 NaN NaN NaN NaN NaN NaN NaN 178.58 1 173.67 173.17 174.17 -4.9088 0 0 0 0.2396 1 35626 35626 0.0082765 0 1 + 45740 24091 30415 30435 45040 45040 0.004217345751044377 TGSGRIAL 8 Unmodified _TGSGRIAL_ 0 0 0 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.E2016Rfs*13|1|0.27|ENSG00000053747|chr18:23901164-23901164|G/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7266845703125 2 387.727052 773.439552 NaN NaN NaN NaN NaN NaN NaN 48.363 1 45.494 44.994 45.994 -2.869 0 0 0 0.21486 1 9148 9148 5.2307 0 1 45741 1257 30416 30436 45041 45041 0.04376960037450317 TGSKRRPQ 8 Unmodified _TGSKRRPQ_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25732421875 2 465.267407 928.520262 NaN NaN NaN NaN NaN NaN NaN 43.917 1 41.17 40.67 41.67 -2.7475 0 0 0 0.21486 1 7943 7943 11.64 0.81637 1 45742 528 30417 30437 45042 45042 0.053142410803729945 TGSLQHYSA 9 Unmodified _TGSLQHYSA_ 0 0 0 REV__ENSG00000150457|ENST00000382592|LATS2 REV__ENSG00000150457|ENST00000382592|LATS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 482.22705078125 2 482.230156 962.445759 -0.071796 -3.4622E-05 -1.8726 -0.00090301 -1.9444 -0.00093763 482.2291405872723 42.192 0.39067 39.586 39.36 39.75 -2.606 13 10 2 0 0 0 0.35556 1 7611 7611 12.241 2.0901 1 1536400 + 45743 17032 30418 30438 45043 45043 -0.036965665216712296 TGSSSERIY 9 Unmodified _TGSSSERIY_ 0 0 0 REV__ENST00000230340.8_1_6:41888940-41889138:+|nuORF REV__ENST00000230340.8_1_6:41888940-41889138:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 333.82257080078125 3 333.829573 998.466889 NaN NaN NaN NaN NaN NaN NaN 45.403 1 42.536 42.036 43.036 -2.8666 0 0 0 0.18755 1 8239 8239 10.899 9.1567 1 + 45744 20065 30419 30439 45044 45044 -0.03240601212792171 TGSTYAPIGEV 11 Unmodified _TGSTYAPIGEV_ 0 0 0 ENST00000550262.1_1_12:110770401-110771957:+|nuORF;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ATP2A2|p.I1027Cfs*4|1|0.37|ENSG00000174437|chr12:110346394-110346395|-/TGTGCTGCTCATAATGCCCCTGG|frameshift_variant;ENSG00000174437|ENST00000539276|ATP2A2 ENST00000550262.1_1_12:110770401-110771957:+|nuORF ENST00000550262.1_1_12:110770401-110771957:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7739868164062 2 547.771854 1093.52915 0.29889 0.00016373 0.021343 1.1691E-05 0.32024 0.00017542 547.7718861767562 102.86 0.69543 98.543 98.22 98.915 -4.3208 35 19 3 0 0 0 0.69278 1 19765 19765 12.241 0.60036 1 2951300 45745 266 30420 30440 45045 45045 -0.013868748644881634 TGSVRISFGY 10 Unmodified _TGSVRISFGY_ 0 0 0 ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7784423828125 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 125.98 1 121.33 120.83 121.83 -4.6495 0 0 0 2.8426 1 24238 24238 0.84494 0 1 45746 1522 30421 30441 45046 45046 0.011205549549231364 TGTPERAQP 9 Unmodified _TGTPERAQP_ 0 0 0 nc|ENSG00000236438|C9JC47|FAM157A;nc|ENSG00000233013|P0CG42|FAM157B;nc|ENSG00000260528|P0CG43|FAM157C;ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL nc|ENSG00000236438|C9JC47|FAM157A nc|ENSG00000236438|C9JC47|FAM157A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74371337890625 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 81.509 1 77.952 77.452 78.452 -3.557 0 0 0 0.23277 1 15919 15919 13.906 0.39817 1 45747 12610 30422 30442 45047 45047 -0.007208776303286868 TGTSGAGG 8 Unmodified _TGTSGAGG_ 0 0 0 REV__ENST00000531236.1_1_11:71192815-71195619:+|nuORF REV__ENST00000531236.1_1_11:71192815-71195619:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.03973388671875 2 304.137736 606.260919 NaN NaN NaN NaN NaN NaN NaN 34.923 1 34.923 34.423 35.423 0 0 0 0 0.21486 1 6402 6402 0 0 1 + 45748 22767 30423 30443 45048 45048 -0.0579612960140139 TGTVHPLSAP 10 Unmodified _TGTVHPLSAP_ 0 0 0 nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1;ENSG00000178188|ENST00000684370|SH2B1;ENST00000569471.1_1_16:28880556-28883354:+|nuORF nc|ENSG00000178188|Q9NRF2-2|SH2B1 nc|ENSG00000178188|Q9NRF2-2|SH2B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2642822265625 2 490.263999 978.513445 0.064146 3.1448E-05 0.10466 5.1312E-05 0.16881 8.2761E-05 490.2640316435626 59.279 1.7152 56.368 55.784 57.5 -2.9105 129 48 4 0 0 0 0.38778 1 11294 11294 1.0651 0 1 42586000 45749 6564 30424 30444 45049 45049 0.02332883409144415 TGVGLCPK 8 Unmodified _TGVGLCPK_ 0 0 0 nc|ENSG00000184481|P98177-2|FOXO4;ENSG00000184481|ENST00000374259|FOXO4 nc|ENSG00000184481|P98177-2|FOXO4 nc|ENSG00000184481|P98177-2|FOXO4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7119445800781 2 387.712556 773.41056 NaN NaN NaN NaN NaN NaN NaN 44.16 1 44.16 43.66 44.66 0 0 0 0 0.21486 1 8279 8279 5.2307 0 1 45750 6912 30425 30445 45050 45050 0.01479099416826557 TGVSILLVSL 10 Unmodified _TGVSILLVSL_ 0 0 0 REV__ENST00000155674.9_1_22:17618446-17618698:-|nuORF REV__ENST00000155674.9_1_22:17618446-17618698:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 500.80267333984375 2 501.3157 1000.61685 0.18902 9.4758E-05 0.10288 5.1578E-05 0.2919 0.00014634 501.31563950073604 119.82 0.80182 119.82 119.37 120.18 0 55 22 3 0 0 0 1.1149 1 23588 23588 3.104 2.2288 1 5605200 + 45751 19976 30426 30446 45051 45051 0.11656370796947613 TGVWRTTPGA 10 Unmodified _TGVWRTTPGA_ 0 0 0 REV__ENST00000589613.1_1_17:40761741-40762767:+|nuORF REV__ENST00000589613.1_1_17:40761741-40762767:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6854858398438 2 523.274898 1044.53524 -0.85685 -0.00044837 0.73211 0.00038309 -0.12474 -6.5276E-05 523.2750979385627 20.134 0.34793 18.809 18.664 19.012 -1.3251 19 9 3 0 0 0 0.75233 1 3103 3103 22.736 8.8302 1 1408600 + 45752 23313 30427 30447 45052 45052 0.014756881576886371 TGVWRTTPGA 10 Unmodified _TGVWRTTPGA_ 0 0 0 REV__ENST00000589613.1_1_17:40761741-40762767:+|nuORF REV__ENST00000589613.1_1_17:40761741-40762767:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.274898 1044.53524 0.14173 7.4163E-05 0.36638 0.00019172 0.50811 0.00026588 523.2751602258508 18.828 0.27388 18.828 18.687 18.961 0 0.0097883 -0.00014267 NaN 22.736 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1184800 + 45753 23313 30427 30447 0.014756881576886371 TGWGGGLL 8 Unmodified _TGWGGGLL_ 0 0 0 REV__ENST00000550412.5_2_12:56117861-56118326:+|nuORF REV__ENST00000550412.5_2_12:56117861-56118326:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2056579589844 2 380.703046 759.391539 -0.64354 -0.000245 0.6795 0.00025869 0.03596 1.369E-05 380.703287044799 56.717 0.55971 53.541 53.298 53.858 -3.1761 25 15 2 0 0 0 0.76728 1 10573 10573 5.7604 0 1 823940 + 45754 22924 30428 30448 45053 45053 0.0022188611743558795 TGYFGVRF 8 Unmodified _TGYFGVRF_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1631164550781 3 316.164227 945.470852 -1.6341 -0.00051664 -2.5276 -0.00079913 -4.1617 -0.0013158 316.1633625953889 19.857 0.27843 18.222 18.083 18.361 -1.6351 11 7 2 0 0 0 0.81659 1 3016 3016 3.5965 0.31518 1 923130 + 45755 15487 30429 30449 45054 45054 -0.004064669284275624 TGYFGVRF 8 Unmodified _TGYFGVRF_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 316.164227 945.470852 -0.53757 -0.00016996 -3.6998 -0.0011697 -4.2374 -0.0013397 316.1630513505808 18.319 0.20715 18.319 18.23 18.437 0 0.040157 -0.00024189 NaN 3.5965 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1556800 + 45756 15487 30429 30449 -0.004064669284275624 TGYFGVRF 8 Unmodified _TGYFGVRF_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 316.164227 945.470852 -0.29677 -9.3828E-05 -4.538 -0.0014348 -4.8348 -0.0015286 316.16259857713726 19.621 0.34212 18.296 18.145 18.487 -1.3251 0.016814 -0.0010369 NaN 3.5965 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 905040 + 45757 15487 30429 30449 -0.004064669284275624 TGYFGVRF 8 Unmodified _TGYFGVRF_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 316.164227 945.470852 -1.6341 -0.00051664 -2.5276 -0.00079913 -4.1617 -0.0013158 316.1633625953889 19.857 0.27843 18.222 18.083 18.361 -1.6351 -0.056971 0.00086997 NaN 3.5965 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 923130 + 45758 15487 30429 30449 -0.004064669284275624 TGYNREFLA 9 Unmodified _TGYNREFLA_ 0 0 0 tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1 tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1 tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.0926513671875 3 357.513696 1069.51926 -0.57207 -0.00020452 0.5049 0.00018051 -0.067173 -2.4015E-05 357.5138094662556 62.891 0.67172 62.891 62.589 63.26 0 56 18 5 0 0 0 0.77797 1 12036 12036 2.7352 0 1 26725000 45759 26231 30430 30450 45055 45055 -0.012720180792030078 THDHAQLIF 9 Unmodified _THDHAQLIF_ 0 0 0 ENST00000490993.5_1_3:132412532-132416205:-|nuORF ENST00000490993.5_1_3:132412532-132416205:-|nuORF ENST00000490993.5_1_3:132412532-132416205:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2750854492188 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 82.264 1 78.707 78.207 79.207 -3.557 0 0 0 0.19704 1 16077 16077 0.12781 0.063827 1 45760 10522 30431 30451 45056 45056 -0.001803118423140404 THDQVHFY 8 Unmodified _THDQVHFY_ 0 0 0 ENSG00000243477|ENST00000443094|NAA80;nc|ENSG00000243477|Q93015-2|NAA80 ENSG00000243477|ENST00000443094|NAA80 ENSG00000243477|ENST00000443094|NAA80 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6761474609375 2 523.738148 1045.46174 NaN NaN NaN NaN NaN NaN NaN 131.77 1 127.13 126.63 127.63 -4.6399 0 0 0 0.20896 1 25967 25967 18.135 1.1927 1 45761 7871 30432 30452 45057 45057 -0.059168602847421425 THEESRGK 8 Unmodified _THEESRGK_ 0 0 0 ENST00000468590.1_1_20:57227170-57245628:+|nuORF ENST00000468590.1_1_20:57227170-57245628:+|nuORF ENST00000468590.1_1_20:57227170-57245628:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1559143066406 3 315.157912 942.451907 NaN NaN NaN NaN NaN NaN NaN 79.658 1 75.982 75.482 76.482 -3.676 0 0 0 0.22847 1 15180 15180 0.25148 0 1 45762 10171 30433 30453 45058 45058 -0.021620482901312243 THKRFKKL 8 Unmodified _THKRFKKL_ 0 0 0 REV__ENST00000319888.10_1_18:2538642-2538774:-|nuORF REV__ENST00000319888.10_1_18:2538642-2538774:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.51556396484375 3 353.225821 1056.65563 -0.70437 -0.0002488 -0.4832 -0.00017068 -1.1876 -0.00041948 353.22562421113975 26.084 0.58688 24.162 23.953 24.54 -1.9222 28 16 2 0 0 0 0.89879 1 4279 4279 0.0082765 0.0082765 1 618180 + 45763 20540 30434 30454 45059 45059 0.12957140941989564 THKSMFLP 8 Unmodified _THKSMFLP_ 0 0 0 ENST00000529851.5_1_2:68694778-68729972:+|nuORF ENST00000529851.5_1_2:68694778-68729972:+|nuORF ENST00000529851.5_1_2:68694778-68729972:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2374572753906 2 480.752213 959.489873 0.78466 0.00037723 1.2882 0.00061929 2.0728 0.00099652 480.7528675041002 28.673 1.1465 26.717 26.192 27.338 -1.9561 37 32 2 0 0 0 0.62642 1 5091 5091 20.454 3.3407 1 675360 45764 10950 30435 30455 45060 45060 0.008507463709747753 THLELPDH 8 Unmodified _THLELPDH_ 0 0 0 REV__ENSG00000155850|ENST00000286298|SLC26A2 REV__ENSG00000155850|ENST00000286298|SLC26A2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23968505859375 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 171.41 1 166.5 166 167 -4.9149 0 0 0 0.23487 1 33947 33947 0.12286 0.058877 1 + 45765 17228 30436 30456 45061 45061 -0.015319761420073519 THLKDQIG 8 Unmodified _THLKDQIG_ 0 0 0 REV__ENSG00000171109|ENST00000471841|MFN1 REV__ENSG00000171109|ENST00000471841|MFN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 457.23040771484375 2 456.250892 910.48723 -0.031454 -1.4351E-05 0.079558 3.6298E-05 0.048104 2.1948E-05 456.2509631686674 42.846 0.44825 40.24 39.932 40.38 -2.606 20 12 2 0 0 0 8448 1 7699 7699 3.2813 0 1 1105600 + 45766 18200 30437 30457 45062 45062 0.02840614237675254 THLKDQIG 8 Unmodified _THLKDQIG_ 0 0 0 REV__ENSG00000171109|ENST00000471841|MFN1 REV__ENSG00000171109|ENST00000471841|MFN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 456.250892 910.48723 0.42238 0.00019271 -0.31937 -0.00014571 0.10301 4.6998E-05 456.2507750460446 40.172 0.42962 40.172 40.032 40.462 0 -0.056536 -0.00034654 NaN 3.2813 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 923370 + 45767 18200 30437 30457 0.02840614237675254 THLKDQIG 8 Unmodified _THLKDQIG_ 0 0 0 REV__ENSG00000171109|ENST00000471841|MFN1 REV__ENSG00000171109|ENST00000471841|MFN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 456.250892 910.48723 -0.21837 -9.9633E-05 0.46217 0.00021086 0.24379 0.00011123 456.2511113162042 42.989 0.42594 40.27 39.914 40.34 -2.7191 0.041537 0.00036662 NaN 3.2813 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1754500 + 45768 18200 30437 30457 0.02840614237675254 THLKDQIG 8 Unmodified _THLKDQIG_ 0 0 0 REV__ENSG00000171109|ENST00000471841|MFN1 REV__ENSG00000171109|ENST00000471841|MFN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 456.250892 910.48723 -0.10364 -4.7285E-05 0.19473 8.8846E-05 0.091093 4.1561E-05 456.25088595502865 42.882 0.40874 40.231 39.954 40.363 -2.651 0.0027624 0.00012258 NaN 3.2813 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1210200 + 45769 18200 30437 30457 0.02840614237675254 THLKDQIG 8 Unmodified _THLKDQIG_ 0 0 0 REV__ENSG00000171109|ENST00000471841|MFN1 REV__ENSG00000171109|ENST00000471841|MFN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 456.250892 910.48723 -0.031454 -1.4351E-05 0.079558 3.6298E-05 0.048104 2.1948E-05 456.2509631686674 42.846 0.44825 40.24 39.932 40.38 -2.606 0.012237 1.7484E-05 NaN 3.2813 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1105600 + 45770 18200 30437 30457 0.02840614237675254 THLLVLYPFYK 11 Unmodified _THLLVLYPFYK_ 0 0 0 REV__ENSG00000136802|ENST00000372600|LRRC8A REV__ENSG00000136802|ENST00000372600|LRRC8A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2462158203125 3 465.267463 1392.78056 NaN NaN NaN NaN NaN NaN NaN 83.743 1 80.045 79.545 80.545 -3.6985 0 0 0 0.22632 1 15991 15991 3.0723 0 1 + 45771 16348 30438 30458 45063 45063 0.09987968567838834 THLRRHYVLYS 11 Unmodified _THLRRHYVLYS_ 0 0 0 REV__ENSG00000213799|ENST00000458035|ZNF845 REV__ENSG00000213799|ENST00000458035|ZNF845 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7788391113281 3 482.265115 1443.77352 NaN NaN NaN NaN NaN NaN NaN 77.179 1 73.716 73.216 74.216 -3.4633 0 0 0 0.22632 1 15066 15066 0.026206 0 1 + 45772 19646 30439 30459 45064 45064 0.06938048739993974 THLRRHYVLYS 11 Unmodified _THLRRHYVLYS_ 0 0 0 REV__ENSG00000213799|ENST00000458035|ZNF845 REV__ENSG00000213799|ENST00000458035|ZNF845 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77703857421875 3 482.265115 1443.77352 NaN NaN NaN NaN NaN NaN NaN 77.973 1 74.206 73.706 74.706 -3.7664 0 0 0 0.22632 1 14779 14779 0.026206 0 1 + 45773 19646 30439 30459 45065 45065 0.06938048739993974 THLSFLPQGE 10 Unmodified _THLSFLPQGE_ 0 0 0 nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3;ENST00000540057.1_1_11:73796630-73801976:-|nuORF nc|ENSG00000168014|Q4AC94-2|C2CD3 nc|ENSG00000168014|Q4AC94-2|C2CD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.871826171875 3 376.860984 1127.56112 -0.59448 -0.00022404 -2.9992 -0.0011303 -3.5937 -0.0013543 377.1946260441964 16.676 0.24448 15.46 15.25 15.495 -1.2159 9 6 2 0 0 0 0.52989 1 2616 2616 1.9064 0 1 159780 45774 5868 30440 30460 45066 45066 0.002445376093419327 THLSFLPQGE 10 Unmodified _THLSFLPQGE_ 0 0 0 nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3;ENST00000540057.1_1_11:73796630-73801976:-|nuORF nc|ENSG00000168014|Q4AC94-2|C2CD3 nc|ENSG00000168014|Q4AC94-2|C2CD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 376.860984 1127.56112 -2.1041 -0.00079296 -1.4567 -0.00054896 -3.5608 -0.0013419 376.8595656609533 16.72 0.20082 15.367 15.237 15.437 -1.3534 -0.046464 0.0010823 NaN 1.9064 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 89450 45775 5868 30440 30460 0.002445376093419327 THNQQRQKHHQ 11 Unmodified _THNQQRQKHHQ_ 0 0 0 REV__sp|F5HAM0|UL144_HCMVMMembraneglycoproteinUL144OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL144PE=3SV=1 REV__sp|F5HAM0|UL144_HCMVMMembraneglycoproteinUL144OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL144PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2443542480469 3 481.243373 1440.70829 NaN NaN NaN NaN NaN NaN NaN 78.673 1 75.21 74.71 75.71 -3.4633 0 0 0 0.21779 1 15362 15362 0.58532 0.55391 1 + 45776 24677 30441 30461 45067 45067 0.005564472668311282 THNQQRQKHHQ 11 Unmodified _THNQQRQKHHQ_ 0 0 0 REV__sp|F5HAM0|UL144_HCMVMMembraneglycoproteinUL144OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL144PE=3SV=1 REV__sp|F5HAM0|UL144_HCMVMMembraneglycoproteinUL144OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL144PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2432556152344 3 481.243373 1440.70829 NaN NaN NaN NaN NaN NaN NaN 56.276 1 53.1 52.6 53.6 -3.1761 0 0 0 0.22632 1 10468 10468 0.172 0 1 + 45777 24677 30441 30461 45068 45068 0.005564472668311282 THPAAPAP 8 Unmodified _THPAAPAP_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2021179199219 2 381.20067 760.386788 NaN NaN NaN NaN NaN NaN NaN 42.392 1 42.392 41.892 42.892 0 0 0 0 0.23711 1 7931 7931 0.62683 0 1 + 45778 15439 30442 30462 45069 45069 -0.0029899802534600894 THPHGVPE 8 Unmodified _THPHGVPE_ 0 0 0 ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant;ROS1|p.L1167*|1|0.19|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant;ROS1|p.N1247Mfs*14|1|0.11|ENSG00000047936|chr6:117357918-117357918|T/-|frameshift_variant;ROS1|p.Y363Lfs*25|1|0.38|ENSG00000047936|chr6:117394238-117394239|-/A|frameshift_variant;ROS1|p.N1821Tfs*2|1|0.44|ENSG00000047936|chr6:117326319-117326319|T/-|frameshift_variant;ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1 ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant;ROS1|p.N1821Tfs*2|1|0.44|ENSG00000047936|chr6:117326319-117326319|T/-|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21661376953125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 100.94 1 96.954 96.454 97.454 -3.9895 0 0 0 0.21486 1 19400 19400 9.3474 0.75416 1 45779 25620;1224 30443 30463 45070 45070 -0.027245144849416647 THPTPPSH 8 Unmodified _THPTPPSH_ 0 0 0 REV__ENST00000310771.8_1_7:99950889-99951396:+|nuORF REV__ENST00000310771.8_1_7:99950889-99951396:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2148742675781 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 161.5 1 156.35 155.85 156.85 -5.1438 0 0 0 0.21486 1 31367 31367 4.756 0 1 + 45780 20483 30444 30464 45071 45071 -0.027245144849530334 THPTPPSH 8 Unmodified _THPTPPSH_ 0 0 0 REV__ENST00000310771.8_1_7:99950889-99951396:+|nuORF REV__ENST00000310771.8_1_7:99950889-99951396:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21563720703125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 175.5 1 170.62 170.12 171.12 -4.8815 0 0 0 0.21486 1 34901 34901 2.3027 0 1 + 45781 20483 30444 30464 45072 45072 -0.027245144849530334 THPTPPSH 8 Unmodified _THPTPPSH_ 0 0 0 REV__ENST00000310771.8_1_7:99950889-99951396:+|nuORF REV__ENST00000310771.8_1_7:99950889-99951396:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156066894531 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 175.76 1 170.88 170.38 171.38 -4.8739 0 0 0 0.21486 1 34952 34952 2.3027 0 1 + 45782 20483 30444 30464 45073 45073 -0.027245144849530334 THPTPPSH 8 Unmodified _THPTPPSH_ 0 0 0 REV__ENST00000310771.8_1_7:99950889-99951396:+|nuORF REV__ENST00000310771.8_1_7:99950889-99951396:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2153015136719 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 176 1 171.13 170.63 171.63 -4.8739 0 0 0 0.21486 1 35002 35002 2.3027 0 1 + 45783 20483 30444 30464 45074 45074 -0.027245144849530334 THPTYMKSTDK 11 Unmodified _THPTYMKSTDK_ 0 0 0 REV__EXPH5|p.I783T|1|0.19|ENSG00000110723|chr11:108513159-108513159|A/G|missense_variant REV__EXPH5|p.I783T|1|0.19|ENSG00000110723|chr11:108513159-108513159|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2159118652344 3 436.879939 1307.61799 NaN NaN NaN NaN NaN NaN NaN 158.06 1 152.79 152.29 153.29 -5.2712 0 0 0 0.23698 1 30667 30667 1.1098 0 1 + 45784 23507 30445 30465 45075 45075 -0.02351782896471377 THQLREVQL 9 Unmodified _THQLREVQL_ 0 0 0 REV__nc|ENSG00000025434|Q13133-2|NR1H3 REV__nc|ENSG00000025434|Q13133-2|NR1H3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2062683105469 3 375.212128 1122.61456 -0.15154 -5.6859E-05 -0.23886 -8.9623E-05 -0.3904 -0.00014648 375.21206885853184 21.837 0.41777 20.452 20.246 20.664 -1.3847 27 11 3 0 0 0 0.75263 1 3413 3413 3.8763 0.28927 1 2615100 + 45785 14001 30446 30466 45076 45076 0.05815335111856257 THRRLMRR 8 Unmodified _THRRLMRR_ 0 0 0 REV__ENSG00000105186|ENST00000306065|ANKRD27 REV__ENSG00000105186|ENST00000306065|ANKRD27 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.8894348144531 3 375.889326 1124.64615 NaN NaN NaN NaN NaN NaN NaN 10.297 1 10.297 9.7972 10.797 0 0 0 0 0.21486 1 1277 1277 0 0 1 + 45786 14967 30447 30467 45077 45077 0.08881049384808648 THRYRGSY 8 Unmodified _THRYRGSY_ 0 0 0 ENST00000507297.5_1_5:138860740-138860965:-|nuORF;ENST00000511850.1_1_5:138858703-138860965:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENST00000507297.5_1_5:138860740-138860965:-|nuORF ENST00000507297.5_1_5:138860740-138860965:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2627563476562 2 520.25704 1038.49953 0.2394 0.00012455 -1.3949 -0.00072568 -1.1555 -0.00060113 520.2562678039903 23.918 0.78312 23.918 23.623 24.406 0 84 22 6 0 0 0 0.79017 1 4144 4144 4.756 0 1 82477000 45787 10697 30448 30468 45078 45078 -0.018183492992648098 THSCSSGHL 9 Unmodified _THSCSSGHL_ 0 0 0 REV__ENST00000356245.7_1_5:151183648-151183774:+|nuORF REV__ENST00000356245.7_1_5:151183648-151183774:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16363525390625 3 310.136231 927.386864 NaN NaN NaN NaN NaN NaN NaN 150.67 1 145.55 145.05 146.05 -5.1204 0 0 0 0.19622 1 29202 29202 0.96228 0.954 1 + 45788 20809 30449 30469 45079 45079 -0.0797336608762862 THSRVISY 8 Unmodified _THSRVISY_ 0 0 0 OR7E24|p.F122Lfs*12|1|0.39|ENSG00000237521|chr19:9251403-9251403|T/-|frameshift_variant;OR7E24|p.L148Cfs*7|1|0.26|ENSG00000237521|chr19:9251481-9251481|C/-|frameshift_variant;OR7E24|p.F168Lfs*12|2|0.36|ENSG00000237521|chr19:9251541-9251541|T/-|frameshift_variant;ENSG00000237521|ENST00000456448|OR7E24 OR7E24|p.F122Lfs*12|1|0.39|ENSG00000237521|chr19:9251403-9251403|T/-|frameshift_variant OR7E24|p.F122Lfs*12|1|0.39|ENSG00000237521|chr19:9251403-9251403|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78692626953125 2 481.756341 961.498129 NaN NaN NaN NaN NaN NaN NaN 122.46 1 117.91 117.41 118.41 -4.5476 0 0 0 0.21452 1 24140 24140 13.508 0 1 45789 7830 30450 30470 45080 45080 0.01584016611957395 THSSLFLALY 10 Unmodified _THSSLFLALY_ 0 0 0 ENSG00000204710|ENST00000377185|SPDYC ENSG00000204710|ENST00000377185|SPDYC ENSG00000204710|ENST00000377185|SPDYC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32958984375 2 576.308406 1150.60226 NaN NaN NaN NaN NaN NaN NaN 156.45 1 151.17 150.67 151.67 -5.2854 0 0 0 2.8426 1 30353 30353 0.84494 0.57955 1 45790 7607 30451 30471 45081 45081 0.032982986488150345 THTLALTAK 9 Unmodified _THTLALTAK_ 0 0 0 EIF2B2|p.A257T|1|0.31|ENSG00000119718|chr14:75006652-75006652|G/A|missense_variant EIF2B2|p.A257T|1|0.31|ENSG00000119718|chr14:75006652-75006652|G/A|missense_variant EIF2B2|p.A257T|1|0.31|ENSG00000119718|chr14:75006652-75006652|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.19012451171875 3 319.190553 954.549831 NaN NaN NaN NaN NaN NaN NaN 123.57 1 123.57 123.07 124.07 0 0 0 0 0.23508 1 24360 24360 0.96228 0 1 45791 928 30452 30472 45082 45082 0.07073760305831911 THTLALTAK 9 Unmodified _THTLALTAK_ 0 0 0 EIF2B2|p.A257T|1|0.31|ENSG00000119718|chr14:75006652-75006652|G/A|missense_variant EIF2B2|p.A257T|1|0.31|ENSG00000119718|chr14:75006652-75006652|G/A|missense_variant EIF2B2|p.A257T|1|0.31|ENSG00000119718|chr14:75006652-75006652|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.1532287597656 3 319.190553 954.549831 NaN NaN NaN NaN NaN NaN NaN 114.3 1 109.82 109.32 110.32 -4.4726 0 0 0 0.23508 1 22526 22526 0.96228 0 1 45792 928 30452 30472 45083 45083 0.07073760305831911 THTRLHRF 8 Unmodified _THTRLHRF_ 0 0 0 REV__ENSG00000250571|ENST00000340042|GLI4 REV__ENSG00000250571|ENST00000340042|GLI4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.07489013671875 3 356.533425 1066.57845 -0.42187 -0.00015041 -0.14141 -5.0416E-05 -0.56328 -0.00020083 356.53330677681805 28.062 0.48755 26.066 25.822 26.31 -1.9962 32 13 3 0 0 0 1.0265 1 4677 4677 0 0 1 1861100 + 45793 19828 30453 30473 45084 45084 0.047819227256468366 THVTLRIVK 9 Unmodified _THVTLRIVK_ 0 0 0 REV__nc|ENSG00000171790|Q499Z3-2|SLFNL1 REV__nc|ENSG00000171790|Q499Z3-2|SLFNL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.07489013671875 3 356.229231 1065.66586 0.90217 0.00032138 -1.0305 -0.0003671 -0.12836 -4.5724E-05 356.2288602245077 25.709 0.86852 24.061 23.442 24.311 -1.6482 36 24 2 0 0 0 0.88313 1 4528 4528 2.2828 2.2828 1 939630 + 45794 18248 30454 30474 45085 45085 0.1356570387656575 TIADSSHSV 9 Unmodified _TIADSSHSV_ 0 0 0 REV__nc|ENSG00000111405|P21128-3|ENDOU REV__nc|ENSG00000111405|P21128-3|ENDOU MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2326354980469 2 458.722164 915.429775 0.23828 0.0001093 -2.1625 -0.00099197 -1.9242 -0.00088266 458.72071310541503 37.129 0.21031 34.791 34.701 34.911 -2.3375 6 5 2 0 0 0 0.84208 1 6568 6568 3.9444 1.3669 1 160150 + 45795 15242 30455 30475 45086 45086 -0.031322727585575194 TIAQRCNRQL 10 Unmodified _TIAQRCNRQL_ 0 0 0 REV__SENP6|p.F580Lfs*72|2|0.17|ENSG00000112701|chr6:75677142-75677142|T/-|frameshift_variant REV__SENP6|p.F580Lfs*72|2|0.17|ENSG00000112701|chr6:75677142-75677142|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.282958984375 2 601.824763 1201.63497 0.80073 0.0004819 -1.0245 -0.00061659 -0.2238 -0.00013469 601.8240856639068 101.05 0.60034 101.05 100.76 101.36 0 24 16 2 0 0 0 0.86078 1 19885 19885 8.1555 0 1 2376100 + 45796 15310 30456 30476 45087 45087 0.04222182500006966 TICFLMIFY 9 Unmodified _TICFLMIFY_ 0 0 0 REV__ENSG00000157916|ENST00000605895|RER1 REV__ENSG00000157916|ENST00000605895|RER1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.336669921875 2 575.787407 1149.56026 0.043019 2.477E-05 -4.1948 -0.0024153 -4.1518 -0.0023906 575.7852370979363 79.281 0.13827 75.477 75.372 75.51 -3.8048 5 3 2 0 0 0 0.77732 1 15025 15025 7.9102 4.9149 1 477050 + 45797 17315 30457 30477 45088 45088 -0.008537163555956795 TICPAAARA 9 Unmodified _TICPAAARA_ 0 0 0 REV__ENST00000594784.1_1_19:17534850-17535995:+|nuORF REV__ENST00000594784.1_1_19:17534850-17535995:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23382568359375 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 50.277 1 47.232 46.732 47.732 -3.0453 0 0 0 0.23508 1 9207 9207 5.7319 0.50118 1 + 45798 23369 30458 30478 45089 45089 0.012492891941064954 TICTHYKPSPY 11 Unmodified _TICTHYKPSPY_ 0 0 0 REV__ENST00000588933.5_1_19:9529842-9529914:-|nuORF REV__ENST00000588933.5_1_19:9529842-9529914:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2243347167969 3 437.213029 1308.61726 -0.11564 -5.056E-05 -1.2534 -0.00054801 -1.3691 -0.00059857 437.21273654411436 57.627 0.36369 54.422 54.216 54.579 -3.2052 16 9 2 0 0 0 0.79645 1 10716 10716 4.1166 0.2403 1 1177500 + 45799 23303 30459 30479 45090 45090 -0.024705775455004186 TICTHYKPSPY 11 Unmodified _TICTHYKPSPY_ 0 0 0 REV__ENST00000588933.5_1_19:9529842-9529914:-|nuORF REV__ENST00000588933.5_1_19:9529842-9529914:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 437.213029 1308.61726 -0.25674 -0.00011225 -1.4851 -0.00064929 -1.7418 -0.00076154 437.2129075310308 57.21 0.38544 54.316 54.098 54.484 -2.8944 -0.053058 -0.00016472 NaN 4.1166 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1346000 + 45800 23303 30459 30479 -0.024705775455004186 TICTHYKPSPY 11 Unmodified _TICTHYKPSPY_ 0 0 0 REV__ENST00000588933.5_1_19:9529842-9529914:-|nuORF REV__ENST00000588933.5_1_19:9529842-9529914:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 437.213029 1308.61726 -0.11564 -5.056E-05 -1.2534 -0.00054801 -1.3691 -0.00059857 437.21273654411436 57.627 0.36369 54.422 54.216 54.579 -3.2052 0.053058 0.00013912 NaN 4.1166 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1177500 + 45801 23303 30459 30479 -0.024705775455004186 TICTYKVT 8 Unmodified _TICTYKVT_ 0 0 0 ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647033691406 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 118.85 1 118.85 118.35 119.35 0 0 0 0 0.23626 1 23411 23411 0.12286 0 1 45802 10890 30460 30480 45091 45091 0.00691620414204408 TICTYKVT 8 Unmodified _TICTYKVT_ 0 0 0 ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16461181640625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 119.09 1 119.09 118.59 119.59 0 0 0 0 0.23626 1 23462 23462 0.12286 0 1 45803 10890 30460 30480 45092 45092 0.00691620414204408 TICTYKVT 8 Unmodified _TICTYKVT_ 0 0 0 ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16485595703125 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 136.89 1 136.89 136.39 137.39 0 0 0 0 0.23626 1 27134 27134 0.12286 0 1 45804 10890 30460 30480 45093 45093 0.00691620414204408 TICTYKVT 8 Unmodified _TICTYKVT_ 0 0 0 ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 133.01 1 128.37 127.87 128.87 -4.6399 0 0 0 0.23626 1 26220 26220 0.12286 0 1 45805 10890 30460 30480 45094 45094 0.00691620414204408 TICTYKVT 8 Unmodified _TICTYKVT_ 0 0 0 ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646728515625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 122.46 1 117.77 117.27 118.27 -4.6873 0 0 0 0.23626 1 23517 23517 0.12286 0 1 45806 10890 30460 30480 45095 45095 0.00691620414204408 TICTYKVT 8 Unmodified _TICTYKVT_ 0 0 0 ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 121.41 1 116.88 116.38 117.38 -4.5305 0 0 0 0.23626 1 23373 23373 0.12286 0 1 45807 10890 30460 30480 45096 45096 0.00691620414204408 TICTYKVT 8 Unmodified _TICTYKVT_ 0 0 0 ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF ENST00000525056.1_1_11:108203545-108206748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1644592285156 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 131.71 1 126.92 126.42 127.42 -4.799 0 0 0 0.23626 1 25356 25356 0.12286 0 1 45808 10890 30460 30480 45097 45097 0.00691620414204408 TIDDFVGY 8 Unmodified _TIDDFVGY_ 0 0 0 REV__ENST00000482891.5_1_2:202587756-202633608:-|nuORF REV__ENST00000482891.5_1_2:202587756-202633608:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2489318847656 2 465.216183 928.417813 NaN NaN NaN NaN NaN NaN NaN 127.64 1 122.94 122.44 123.44 -4.6998 0 0 0 0.21323 1 24555 24555 14.582 2.9414 1 + 45809 13827 30461 30481 45098 45098 -0.0492588950174877 TIDEFTRGR 9 Unmodified _TIDEFTRGR_ 0 0 0 REV__ENST00000469295.1_1_12:8074011-8075632:-|nuORF REV__ENST00000469295.1_1_12:8074011-8075632:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7825317382812 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 106.48 1 106.48 105.98 106.98 0 0 0 0 0.20628 1 20933 20933 21.747 1.293 1 + 45810 14139 30462 30482 45099 45099 0.008587693238041538 TIDELQKI 8 Unmodified _TIDELQKI_ 0 0 0 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2401428222656 2 480.274032 958.533512 -0.042736 -2.0525E-05 0.057831 2.7775E-05 0.015095 7.2498E-06 480.2740039057794 87.338 0.9357 83.611 83.291 84.227 -3.727 56 25 3 0 0 0 0.10891 2 17062 17052;17062 61.357 0 1 9699400 45811 26200 30463 30483 45100;45101 45101 0.05258634349092972 TIDELQKI 8 Unmodified _TIDELQKI_ 0 0 0 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2550964355469 2 480.274032 958.533512 0.34554 0.00016596 -0.18178 -8.7305E-05 0.16376 7.8651E-05 480.2738247208183 87.673 0.88796 83.678 83.263 84.151 -3.9953 60 24 3 0 0 0 0.087478 1 16672 16672 78.149 0 1 8905100 45812 26200 30463 30483 45102 45102 0.05258634349092972 TIDELQKI 8 Unmodified _TIDELQKI_ 0 0 0 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2535095214844 2 480.274032 958.533512 0.10109 4.8552E-05 -0.17199 -8.2602E-05 -0.070896 -3.4049E-05 480.2738924171376 87.465 0.84502 83.715 83.273 84.118 -3.7501 57 23 3 0 0 0 0.16655 1 16703 16703 49.933 0 1 10172000 45813 26200 30463 30483 45103 45103 0.05258634349092972 TIDELQKI 8 Unmodified _TIDELQKI_ 0 0 0 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 480.274032 958.533512 0.10624 5.1024E-05 -0.92962 -0.00044647 -0.82338 -0.00039545 480.2739227933658 83.881 1.1281 83.881 83.149 84.277 0 0.15954 -0.00073257 NaN 78.149 60 31 3 NaN NaN NaN NaN 0 NaN NaN 0 9786300 45814 26200 30463 30483 0.05258634349092972 TIDGAKKP 8 Unmodified _TIDGAKKP_ 0 0 0 REV__ENSG00000029559|ENST00000226284|IBSP REV__ENSG00000029559|ENST00000226284|IBSP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2810363769531 2 415.242535 828.470518 NaN NaN NaN NaN NaN NaN NaN 87.332 1 83.337 82.837 83.837 -3.9953 0 0 0 0.21323 1 16631 16631 14.582 4.3983 1 + 45815 14011 30464 30484 45104 45104 0.04942113351705757 TIDINKDPY 9 Unmodified _TIDINKDPY_ 0 0 0 ENST00000592839.6_1_19:2243417-2245742:+|nuORF;ENST00000590034.2_1_19:2243417-2244653:+|nuORF;ENST00000592314.5_1_19:2243417-2246882:+|nuORF;SF3A2|p.T267Qfs*179|1|0.62|ENSG00000104897|chr19:2247944-2247944|C/-|frameshift_variant;SF3A2|p.P297Lfs*149|1|0.56|ENSG00000104897|chr19:2248037-2248037|C/-|frameshift_variant;ENSG00000104897|ENST00000221494|SF3A2 ENST00000592839.6_1_19:2243417-2245742:+|nuORF;ENSG00000104897|ENST00000221494|SF3A2 ENST00000592839.6_1_19:2243417-2245742:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2793579101562 2 539.774396 1077.53424 0.4454 0.00024041 0.11404 6.1556E-05 0.55944 0.00030197 539.7743729550697 72.757 0.62979 69.218 68.914 69.544 -3.5385 45 17 4 0 0 0 0.54354 1 13772 13772 16.942 6.1184 1 4067900 45816 11638;2265 30465 30485 45105 45105 -0.001425710018565951 TIDINKDPY 9 Unmodified _TIDINKDPY_ 0 0 0 ENST00000592839.6_1_19:2243417-2245742:+|nuORF;ENST00000590034.2_1_19:2243417-2244653:+|nuORF;ENST00000592314.5_1_19:2243417-2246882:+|nuORF;SF3A2|p.T267Qfs*179|1|0.62|ENSG00000104897|chr19:2247944-2247944|C/-|frameshift_variant;SF3A2|p.P297Lfs*149|1|0.56|ENSG00000104897|chr19:2248037-2248037|C/-|frameshift_variant;ENSG00000104897|ENST00000221494|SF3A2 ENST00000592839.6_1_19:2243417-2245742:+|nuORF;ENSG00000104897|ENST00000221494|SF3A2 ENST00000592839.6_1_19:2243417-2245742:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 539.774396 1077.53424 -0.027813 -1.5013E-05 0.3998 0.0002158 0.37198 0.00020079 539.7745834972965 69.019 0.60101 69.019 68.684 69.285 0 -0.12142 0.00015777 NaN 16.942 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 5001700 45817 11638;2265 30465 30485 -0.001425710018565951 TIDINKDPY 9 Unmodified _TIDINKDPY_ 0 0 0 ENST00000592839.6_1_19:2243417-2245742:+|nuORF;ENST00000590034.2_1_19:2243417-2244653:+|nuORF;ENST00000592314.5_1_19:2243417-2246882:+|nuORF;SF3A2|p.T267Qfs*179|1|0.62|ENSG00000104897|chr19:2247944-2247944|C/-|frameshift_variant;SF3A2|p.P297Lfs*149|1|0.56|ENSG00000104897|chr19:2248037-2248037|C/-|frameshift_variant;ENSG00000104897|ENST00000221494|SF3A2 ENST00000592839.6_1_19:2243417-2245742:+|nuORF;ENSG00000104897|ENST00000221494|SF3A2 ENST00000592839.6_1_19:2243417-2245742:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 539.774396 1077.53424 0.06276 3.3876E-05 0.24876 0.00013427 0.31152 0.00016815 539.7744702216918 72.466 0.57105 69.156 68.884 69.455 -3.3107 0.01495 -5.28E-06 NaN 16.942 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4339000 45818 11638;2265 30465 30485 -0.001425710018565951 TIDINKDPY 9 Unmodified _TIDINKDPY_ 0 0 0 ENST00000592839.6_1_19:2243417-2245742:+|nuORF;ENST00000590034.2_1_19:2243417-2244653:+|nuORF;ENST00000592314.5_1_19:2243417-2246882:+|nuORF;SF3A2|p.T267Qfs*179|1|0.62|ENSG00000104897|chr19:2247944-2247944|C/-|frameshift_variant;SF3A2|p.P297Lfs*149|1|0.56|ENSG00000104897|chr19:2248037-2248037|C/-|frameshift_variant;ENSG00000104897|ENST00000221494|SF3A2 ENST00000592839.6_1_19:2243417-2245742:+|nuORF;ENSG00000104897|ENST00000221494|SF3A2 ENST00000592839.6_1_19:2243417-2245742:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 539.774396 1077.53424 0.38084 0.00020557 0.099576 5.3749E-05 0.48042 0.00025932 539.7743295590974 72.797 0.57959 69.17 68.873 69.452 -3.6275 0.02903 -0.00016633 NaN 16.942 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3564700 45819 11638;2265 30465 30485 -0.001425710018565951 TIDLGEKKLY 10 Unmodified _TIDLGEKKLY_ 0 0 0 ENST00000444995.7_1_22:25771803-25801278:-|nuORF ENST00000444995.7_1_22:25771803-25801278:-|nuORF ENST00000444995.7_1_22:25771803-25801278:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.265869140625 2 590.334621 1178.65469 NaN NaN NaN NaN NaN NaN NaN 167.38 1 162.44 161.94 162.94 -4.948 0 0 0 0.22588 1 32921 32921 9.3831 0 1 45820 9926 30466 30486 45106 45106 0.07250836991761389 TIDRFDCFY 9 Unmodified _TIDRFDCFY_ 0 0 0 REV__ENSG00000105397|ENST00000525621|TYK2 REV__ENSG00000105397|ENST00000525621|TYK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2671508789062 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 152.2 1 147.03 146.53 147.53 -5.1759 0 0 0 0.23508 1 29498 29498 8.5933 3.8373 1 + 45821 14987 30467 30487 45107 45107 -0.0754679753374603 TIDRKWLG 8 Unmodified _TIDRKWLG_ 0 0 0 REV__ENST00000282356.8_1_5:110712633-110784871:+|nuORF REV__ENST00000282356.8_1_5:110712633-110784871:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.2271423339844 3 330.190665 987.550165 NaN NaN NaN NaN NaN NaN NaN 83.056 1 83.056 82.556 83.556 0 0 0 0 0.21486 1 16192 16192 10.824 2.6684 1 + 45822 20310 30468 30488 45108 45108 0.0558918002569726 TIDTENSTV 9 Unmodified _TIDTENSTV_ 0 0 0 LSM14A|p.H275Sfs*19|1|0.21|ENSG00000257103|chr19:34219425-34219426|-/G|frameshift_variant;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A LSM14A|p.H275Sfs*19|1|0.21|ENSG00000257103|chr19:34219425-34219426|-/G|frameshift_variant LSM14A|p.H275Sfs*19|1|0.21|ENSG00000257103|chr19:34219425-34219426|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2715148925781 2 490.232561 978.45057 -0.30035 -0.00014724 0.77687 0.00038085 0.47652 0.0002336 490.2328696654196 36.769 1.1161 34.3 33.869 34.985 -2.4688 66 31 3 0 0 0 0.15889 1 6799 6799 22.736 10.496 1 1486800 45823 7940 30469 30489 45109 45109 -0.03951727169567221 TIDTENSTV 9 Unmodified _TIDTENSTV_ 0 0 0 LSM14A|p.H275Sfs*19|1|0.21|ENSG00000257103|chr19:34219425-34219426|-/G|frameshift_variant;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A LSM14A|p.H275Sfs*19|1|0.21|ENSG00000257103|chr19:34219425-34219426|-/G|frameshift_variant LSM14A|p.H275Sfs*19|1|0.21|ENSG00000257103|chr19:34219425-34219426|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2586364746094 2 490.232561 978.45057 0.20125 9.8659E-05 0.19794 9.7036E-05 0.39919 0.00019569 490.23267969791794 36.806 1.0573 34.458 34.006 35.063 -2.3479 67 30 3 0 0 0 0.69192 1 6523 6523 20.454 1.1966 1 1664200 45824 7940 30469 30489 45110 45110 -0.03951727169567221 TIDTLTVRE 9 Unmodified _TIDTLTVRE_ 0 0 0 REV__ENST00000434365.1_1_X:114937583-114938135:+|nuORF REV__ENST00000434365.1_1_X:114937583-114938135:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6900634765625 2 524.287671 1046.56079 -0.69247 -0.00036305 1.1792 0.00061826 0.48676 0.0002552 524.2881925280033 110.08 0.8726 105.62 105.38 106.25 -4.4518 40 24 2 0 0 0 0.66788 1 21154 21154 22.736 0.078198 1 2393900 + 45825 21649 30470 30490 45111 45111 0.039371178894725745 TIDYVNCRLY 10 Unmodified _TIDYVNCRLY_ 0 0 0 LRP1B|p.R3186C|1|0.29|ENSG00000168702|chr2:140475207-140475207|G/A|missense_variant LRP1B|p.R3186C|1|0.29|ENSG00000168702|chr2:140475207-140475207|G/A|missense_variant LRP1B|p.R3186C|1|0.29|ENSG00000168702|chr2:140475207-140475207|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.779296875 2 630.308081 1258.60161 NaN NaN NaN NaN NaN NaN NaN 112.34 1 107.88 107.38 108.38 -4.4539 0 0 0 0.22544 1 22139 22139 19.257 1.1106 1 45826 12085 30471 30491 45112 45112 -0.01734864062541419 TIEEDNCCGC 10 Unmodified _TIEEDNCCGC_ 0 0 0 ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.769775390625 2 543.680467 1085.34638 NaN NaN NaN NaN NaN NaN NaN 103.8 1 99.451 98.951 99.951 -4.346 0 0 0 0.22588 1 19883 19883 3.5965 1.019 1 45827 3875 30472 30492 45113 45113 -0.19287836584612705 TIEESLIYR 9 Unmodified _TIEESLIYR_ 0 0 0 SYCP2|p.N1164Tfs*34|1|0.15|ENSG00000196074|chr20:59873920-59873920|T/-|frameshift_variant;SYCP2|p.I1202*|1|0.2|ENSG00000196074|chr20:59869935-59869935|T/-|frameshift_variant;SYCP2|p.I1202Nfs*14|1|0.35|ENSG00000196074|chr20:59869934-59869935|-/T|frameshift_variant;SYCP2|p.L1317Tfs*3|1|0.49|ENSG00000196074|chr20:59868452-59868453|-/T|frameshift_variant;SYCP2|p.K1410Nfs*10|1|0.29|ENSG00000196074|chr20:59866383-59866383|T/-|frameshift_variant;SYCP2|p.S1456Afs*9|1|0.28|ENSG00000196074|chr20:59865820-59865820|T/-|frameshift_variant;ENSG00000196074|ENST00000357552|SYCP2 SYCP2|p.N1164Tfs*34|1|0.15|ENSG00000196074|chr20:59873920-59873920|T/-|frameshift_variant SYCP2|p.N1164Tfs*34|1|0.15|ENSG00000196074|chr20:59873920-59873920|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21234130859375 3 375.20464 1122.59209 NaN NaN NaN NaN NaN NaN NaN 47.105 1 44.155 43.655 44.655 -2.9499 0 0 0 0.21434 1 8591 8591 19.362 1.9193 1 45828 7229 30473 30493 45114 45114 0.035696909235639396 TIEGTQPQ 8 Unmodified _TIEGTQPQ_ 0 0 0 REV__ENSG00000151690|ENST00000392328|MFSD6 REV__ENSG00000151690|ENST00000392328|MFSD6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21868896484375 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 63.224 1 60.226 59.726 60.726 -2.9975 0 0 0 0.21452 1 12212 12212 13.508 0.97634 1 + 45829 17078 30474 30494 45115 45115 -0.017353712702401936 TIEQMLPP 8 Unmodified _TIEQMLPP_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648864746094 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 72.647 1 72.647 72.147 73.147 0 0 0 0 0.23837 1 14090 14090 0.13829 0 1 + 45830 16048 30475 30495 45116 45116 0.00691620414204408 TIEQMLPP 8 Unmodified _TIEQMLPP_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1608581542969 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 110.24 1 105.86 105.36 106.36 -4.3776 0 0 0 0.23837 1 21729 21729 0.12286 0 1 + 45831 16048 30475 30495 45117 45117 0.00691620414204408 TIERTNFY 8 Unmodified _TIERTNFY_ 0 0 0 REV__ENST00000341164.8_1_19:58489676-58489772:-|nuORF REV__ENST00000341164.8_1_19:58489676-58489772:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2612915039062 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 140.95 1 136.3 135.8 136.8 -4.6493 0 0 0 0.20896 1 27836 27836 18.135 1.1927 1 + 45832 20711 30476 30496 45118 45118 -0.011194204534604069 TIETCEDPG 9 Unmodified _TIETCEDPG_ 0 0 0 ENSG00000101216|ENST00000370077|GMEB2 ENSG00000101216|ENST00000370077|GMEB2 ENSG00000101216|ENST00000370077|GMEB2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.1492004394531 3 322.135785 963.385527 NaN NaN NaN NaN NaN NaN NaN 102.78 1 98.462 97.962 98.962 -4.3208 0 0 0 0.19512 1 19679 19679 0.40827 0 1 45833 2050 30477 30497 45119 45119 -0.09763044967064616 TIFAGTLITA 10 Unmodified _TIFAGTLITA_ 0 0 0 ENSG00000198763|ENST00000361453|MT-ND2;ENST00000457540.1_1_1:565028-565094:+|nuORF ENSG00000198763|ENST00000361453|MT-ND2 ENSG00000198763|ENST00000361453|MT-ND2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 504.41497802734375 2 504.292225 1006.5699 0.17284 8.716E-05 0.21437 0.00010811 0.38721 0.00019527 504.2922657868261 165.85 0.24284 161.06 160.91 161.16 -4.7898 15 6 3 0 0 0 0.0049802 1 33240 33240 34.967 26.074 1 13274000 45834 7489 30478 30498 45120 45120 0.0668751124579785 TIFAGTLITA 10 Unmodified _TIFAGTLITA_ 0 0 0 ENSG00000198763|ENST00000361453|MT-ND2;ENST00000457540.1_1_1:565028-565094:+|nuORF ENSG00000198763|ENST00000361453|MT-ND2 ENSG00000198763|ENST00000361453|MT-ND2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 504.79400634765625 2 504.292225 1006.5699 0.38446 0.00019388 0.14801 7.4641E-05 0.53247 0.00026852 504.29217305310243 165.97 0.27872 161.03 160.9 161.18 -4.9484 10 7 2 0 0 0 6.146E-08 1 32501 32501 76.471 61.86 1 10421000 45835 7489 30478 30498 45121 45121 0.0668751124579785 TIGEVTDDI 9 Unmodified _TIGEVTDDI_ 0 0 0 REV__ENSG00000165280|ENST00000358901|VCP REV__ENSG00000165280|ENST00000358901|VCP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2359924316406 2 481.73748 961.460406 -0.20525 -9.8874E-05 -0.37849 -0.00018233 -0.58373 -0.00028121 481.7376386220014 105.1 0.4248 100.88 100.68 101.11 -4.2183 15 11 2 0 0 0 0.79204 1 20662 20662 11.64 0 1 575860 + 45836 17753 30479 30499 45122 45122 -0.021865391641881615 TIHFAIIF 8 Unmodified _TIHFAIIF_ 0 0 0 REV__ENST00000342147.4_1_16:10641279-10641510:-|nuORF REV__ENST00000342147.4_1_16:10641279-10641510:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2416076660156 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 120.16 1 115.69 115.19 116.19 -4.467 0 0 0 0.21486 1 23133 23133 9.3474 0 1 + 45837 19648 30480 30500 45123 45123 0.06143867145135573 TIHPLVRR 8 Unmodified _TIHPLVRR_ 0 0 0 nc|ENSG00000115705|P07202-6|TPO;nc|ENSG00000115705|P07202-5|TPO;nc|ENSG00000115705|P07202-8|TPO;nc|ENSG00000115705|P07202-7|TPO;nc|ENSG00000115705|P07202-2|TPO;nc|ENSG00000115705|P07202-4|TPO;nc|ENSG00000115705|P07202-3|TPO;ENSG00000115705|ENST00000329066|TPO nc|ENSG00000115705|P07202-6|TPO nc|ENSG00000115705|P07202-6|TPO MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 331.2103576660156 3 331.210171 990.608683 NaN NaN NaN NaN NaN NaN NaN 105.76 1 101.67 101.17 102.17 -4.0913 0 0 0 0.21486 1 20347 20347 0.45834 0 1 45838 2879 30481 30501 45124 45124 0.11300281390833788 TIHRRKRR 8 Unmodified _TIHRRKRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 561.8582153320312 2 561.85759 1121.70063 NaN NaN NaN NaN NaN NaN NaN 10.744 1 9.6503 9.1503 10.15 -1.0936 0 0 0 0.21486 1 1239 1239 0 0 1 45839 12222 30482 30502 45125 45125 0.14464384527877883 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 359.8460693359375 4 359.482989 1433.90285 -0.045107 -1.6215E-05 -0.55315 -0.00019885 -0.59825 -0.00021506 359.48275008876163 82.877 0.79889 82.877 82.636 83.435 0 41 22 3 0 0 0 0.53419 1 16141 16141 0.13989 0.13989 1 3296100 45840 12222 30483 30503 45126 45126 0.20325287933292202 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.738037109375 3 478.974893 1433.90285 NaN NaN NaN NaN NaN NaN NaN 66.638 1 66.638 66.138 67.138 0 0 0 0 2.8426 1 12874 12874 0.0013812 0.0013812 1 45841 12222 30483 30503 45127 45127 0.20325287933292202 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 359.21771240234375 4 359.482989 1433.90285 -0.22803 -8.1975E-05 -0.036612 -1.3161E-05 -0.26465 -9.5136E-05 359.48289622883914 98.041 0.34547 93.944 93.676 94.021 -4.0978 12 9 2 0 0 0 0.91149 1 19243 19243 0 0 1 472910 45842 12222 30483 30503 45128 45128 0.20325287933292202 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20721435546875 4 359.482989 1433.90285 0.31303 0.00011253 -0.50127 -0.0001802 -0.18824 -6.767E-05 359.48271782002337 91.333 1.2723 87.238 86.742 88.014 -4.0946 84 36 4 0 0 0 0.53414 1 17381 17381 0.01381 0 1 3495600 45843 12222 30483 30503 45129 45129 0.20325287933292202 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73724365234375 3 478.974893 1433.90285 NaN NaN NaN NaN NaN NaN NaN 91.244 1 87.436 86.936 87.936 -3.8083 0 0 0 2.8426 1 17467 17467 0.13989 0.13989 1 45844 12222 30483 30503 45130 45130 0.20325287933292202 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 359.482989 1433.90285 -0.32781 -0.00011784 0.077788 2.7964E-05 -0.25003 -8.988E-05 359.7338043466025 86.894 0.91884 83.166 82.655 83.574 -3.727 0.14561 0.00061657 NaN 0.13989 50 25 3 NaN NaN NaN NaN 0 NaN NaN 0 2570900 45845 12222 30483 30503 0.20325287933292202 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 359.482989 1433.90285 0.29483 0.00010599 -0.8388 -0.00030153 -0.54397 -0.00019555 359.48261357227824 86.906 1.0165 82.955 82.51 83.526 -3.9503 -0.065647 -0.00070142 NaN 0.13989 49 28 2 NaN NaN NaN NaN 0 NaN NaN 0 1906100 45846 12222 30483 30503 0.20325287933292202 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 359.482989 1433.90285 -0.57812 -0.00020782 0.07037 2.5297E-05 -0.50775 -0.00018253 359.48296763952663 86.814 0.84727 83.085 82.625 83.472 -3.7289 0.064384 0.00060591 NaN 0.13989 38 23 2 NaN NaN NaN NaN 0 NaN NaN 0 2088200 45847 12222 30483 30503 0.20325287933292202 TIICPNQPMY 10 Unmodified _TIICPNQPMY_ 0 0 0 REV__ENST00000502424.1_1_5:14797477-14798464:-|nuORF REV__ENST00000502424.1_1_5:14797477-14798464:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2660522460938 2 590.280477 1178.5464 NaN NaN NaN NaN NaN NaN NaN 156.4 1 151.61 151.11 152.11 -4.7885 0 0 0 0.22588 1 31099 31099 13.042 1.5478 1 + 45848 22437 30484 30504 45131 45131 -0.03572993854663764 TIIIHKKIV 9 Unmodified _TIIIHKKIV_ 0 0 0 REV__nc|ENSG00000182545|Q5GAN6-2|RNASE10 REV__nc|ENSG00000182545|Q5GAN6-2|RNASE10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2769165039062 2 532.863152 1063.71175 0.10315 5.4965E-05 0.56964 0.00030354 0.6728 0.00035851 533.3664448811262 160.4 0.18077 160.4 160.31 160.49 0 6 4 2 0 0 0 0.86532 1 32214 32214 4.756 2.9118 1 1824400 + 45849 18785 30485 30505 45132 45132 0.18244349058795706 TIIRSAYKL 9 Unmodified _TIIRSAYKL_ 0 0 0 nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L;nc|ENSG00000166938|Q8TF46-3|DIS3L;ENST00000564909.5_1_15:66585934-66618751:+|nuORF nc|ENSG00000166938|Q8TF46-2|DIS3L nc|ENSG00000166938|Q8TF46-2|DIS3L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.271484375 2 532.826766 1063.63898 NaN NaN NaN NaN NaN NaN NaN 164.39 1 159.35 158.85 159.85 -5.0446 0 0 0 0.10963 1 32055 32055 7.4771 2.7611 1 45850 5768 30486 30506 45133 45133 0.1097059526537123 TIIVVGGG 8 Unmodified _TIIVVGGG_ 0 0 0 ENST00000278071.6_1_10:106073096-106073477:-|nuORF ENST00000278071.6_1_10:106073096-106073477:-|nuORF ENST00000278071.6_1_10:106073096-106073477:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.0681457519531 2 358.221072 714.42759 NaN NaN NaN NaN NaN NaN NaN 63.613 1 63.613 63.113 64.113 0 0 0 0 0.21486 1 12234 12234 2.5775 0 1 45851 8431 30487 30507 45134 45134 0.05895343294298527 TIIVVGGG 8 Unmodified _TIIVVGGG_ 0 0 0 ENST00000278071.6_1_10:106073096-106073477:-|nuORF ENST00000278071.6_1_10:106073096-106073477:-|nuORF ENST00000278071.6_1_10:106073096-106073477:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 358.04840087890625 2 358.221072 714.42759 NaN NaN NaN NaN NaN NaN NaN 66.747 1 63.421 62.921 63.921 -3.3268 0 0 0 0.21486 1 12572 12572 2.5775 0 1 45852 8431 30487 30507 45135 45135 0.05895343294298527 TIIYRSGSRV 10 Unmodified _TIIYRSGSRV_ 0 0 0 REV__nc|ENSG00000018236|Q12860-2|CNTN1 REV__nc|ENSG00000018236|Q12860-2|CNTN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3335571289062 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 160.14 1 155.35 154.85 155.85 -4.7952 0 0 0 0.22588 1 31843 31843 7.609 0.31972 1 + 45853 13970 30488 30508 45136 45136 0.07655908145943613 TIKAGSNA 8 Unmodified _TIKAGSNA_ 0 0 0 REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2112121582031 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 107.38 1 103.24 102.74 103.74 -4.135 0 0 0 0.2396 1 20652 20652 0 0 1 + 45854 25206 30489 30509 45137 45137 0.018129672835129895 TIKDEGYKI 9 Unmodified _TIKDEGYKI_ 0 0 0 REV__tr|U7SUH8|U7SUH8_FUSNUHPr(Ser)kinase/phosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01425PE=3SV=1 REV__tr|U7SUH8|U7SUH8_FUSNUHPr(Ser)kinase/phosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01425PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2673950195312 2 533.792589 1065.57063 0.32811 0.00017514 0.64645 0.00034507 0.97456 0.00052021 533.7926497368588 121.35 0.46835 116.8 116.53 117 -4.5476 18 12 2 0 0 0 0.73268 1 23944 23944 18.146 8.0724 1 1756800 + 45855 25168 30490 30510 45138 45138 0.04046305894848956 TIKFFWQELEK 11 Unmodified _TIKFFWQELEK_ 0 0 0 REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2637939453125 3 490.26601 1467.7762 NaN NaN NaN NaN NaN NaN NaN 59.766 1 59.766 59.266 60.266 0 0 0 0 0.22632 1 11454 11454 0.58532 0.54153 1 + 45856 25320 30491 30511 45139 45139 0.0610245935426974 TIKFFWQELEK 11 Unmodified _TIKFFWQELEK_ 0 0 0 REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.263427734375 3 490.26601 1467.7762 NaN NaN NaN NaN NaN NaN NaN 131.71 1 131.71 131.21 132.21 0 0 0 0 0.22632 1 26034 26034 2.732 2.7314 1 + 45857 25320 30491 30511 45140 45140 0.0610245935426974 TIKFFWQELEK 11 Unmodified _TIKFFWQELEK_ 0 0 0 REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2626037597656 3 490.26601 1467.7762 NaN NaN NaN NaN NaN NaN NaN 80.062 1 76.386 75.886 76.886 -3.676 0 0 0 0.22632 1 15257 15257 1.4551 0 1 + 45858 25320 30491 30511 45141 45141 0.0610245935426974 TIKKRRKI 8 Unmodified _TIKKRRKI_ 0 0 0 ENSG00000156802|ENST00000287394|ATAD2 ENSG00000156802|ENST00000287394|ATAD2 ENSG00000156802|ENST00000287394|ATAD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2583618164062 2 521.864018 1041.71348 0.047408 2.474E-05 -0.95675 -0.00049929 -0.90934 -0.00047455 521.8637560740864 119.97 0.17676 115.45 115.29 115.47 -4.5221 6 4 2 0 0 0 1.0249 1 23645 23645 0.69038 0 1 1123300 45859 5104 30492 30512 45142 45142 0.1942940286742214 TIKQASSTA 9 Unmodified _TIKQASSTA_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7474670410156 2 453.748182 905.481811 NaN NaN NaN NaN NaN NaN NaN 94.909 1 90.718 90.218 91.218 -4.1911 0 0 0 0.22251 1 18111 18111 16.942 2.104 1 + 45860 17221 30493 30513 45143 45143 0.02528890655196392 TIKVNIPVKVV 11 Unmodified _TIKVNIPVKVV_ 0 0 0 ZNF518B|p.S557I|1|0.03|ENSG00000178163|chr4:10444659-10444659|C/A|missense_variant ZNF518B|p.S557I|1|0.03|ENSG00000178163|chr4:10444659-10444659|C/A|missense_variant ZNF518B|p.S557I|1|0.03|ENSG00000178163|chr4:10444659-10444659|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 605.4017944335938 2 605.400099 1208.78564 NaN NaN NaN NaN NaN NaN NaN 175.02 1 170.14 169.64 170.64 -4.8845 0 0 0 0.23698 1 34789 34789 2.7352 0.89096 1 45861 26626 30494 30514 45144 45144 0.18960272430445002 TILDLKIAKP 10 Unmodified _TILDLKIAKP_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 556.577392578125 2 556.357899 1110.70125 NaN NaN NaN NaN NaN NaN NaN 165.52 1 165.52 165.02 166.02 0 0 0 0 2.8426 1 33602 33602 0.063865 0 1 + 45862 15894 30495 30515 45145 45145 0.15032321613693966 TILFFVVG 8 Unmodified _TILFFVVG_ 0 0 0 REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 448.24945068359375 2 448.268022 894.521491 NaN NaN NaN NaN NaN NaN NaN 118.16 1 118.16 117.66 118.66 0 0 0 0 0.21486 1 23276 23276 5.7604 1.0044 1 + 45863 12880 30496 30516 45146 45146 0.07001062396579982 TILGNYVKA 9 Unmodified _TILGNYVKA_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26263427734375 2 489.784567 977.554582 0.27176 0.0001331 0.50728 0.00024846 0.77904 0.00038156 489.78454527432996 156.98 0.67712 152.2 151.84 152.52 -4.7885 29 18 2 0 0 0 0.50943 1 31267 31267 1.2148 0 1 1337700 45864 7651 30497 30517 45147 45147 0.06490644448615512 TILHLIQRREY 11 Unmodified _TILHLIQRREY_ 0 0 0 REV__ENSG00000174016|ENST00000308293|TENT5D REV__ENSG00000174016|ENST00000308293|TENT5D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2437438964844 3 481.280654 1440.82013 NaN NaN NaN NaN NaN NaN NaN 135.72 1 131.08 130.58 131.58 -4.6399 0 0 0 0.22632 1 26771 26771 0.00056442 0 1 + 45865 18388 30498 30518 45148 45148 0.11735488571298447 TILILLTILEI 11 Unmodified _TILILLTILEI_ 0 0 0 ENST00000514057.1_1_1:569411-569753:+|nuORF;ENSG00000198899|ENST00000361899|MT-ATP6 ENST00000514057.1_1_1:569411-569753:+|nuORF ENST00000514057.1_1_1:569411-569753:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 418.93109130859375 3 418.947619 1253.82103 NaN NaN NaN NaN NaN NaN NaN 10.918 1 10.014 9.5139 10.514 -0.90401 0 0 0 0.23698 1 1407 1407 0 0 1 45866 7517 30499 30519 45149 45149 0.20426890167641432 TILLDTRF 8 Unmodified _TILLDTRF_ 0 0 0 UNC13B|p.K120T|1|0.34|ENSG00000198722|chr9:35237791-35237791|A/C|missense_variant UNC13B|p.K120T|1|0.34|ENSG00000198722|chr9:35237791-35237791|A/C|missense_variant UNC13B|p.K120T|1|0.34|ENSG00000198722|chr9:35237791-35237791|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26116943359375 2 489.784567 977.554582 0.27176 0.0001331 0.50728 0.00024846 0.77904 0.00038156 489.78454527432996 156.98 0.67712 152.2 151.84 152.52 -4.7885 29 18 2 0 0 0 8448 1 31182 31182 0.62683 0 1 1337700 45867 26551 30500 30520 45150 45150 0.06490644448626881 TILPILRP 8 Unmodified _TILPILRP_ 0 0 0 REV__nc|ENSG00000163539|O75122|CLASP2 REV__nc|ENSG00000163539|O75122|CLASP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5289306640625 2 461.807845 921.601138 NaN NaN NaN NaN NaN NaN NaN 30.372 1 30.372 29.872 30.872 0 0 0 0 0.23899 1 5456 5456 1.7423 0 1 + 45868 13441 30501 30521 45151 45151 0.13720129070566145 TILVKKVK 8 Unmodified _TILVKKVK_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2486267089844 2 464.83132 927.648088 NaN NaN NaN NaN NaN NaN NaN 105.69 1 105.69 105.19 106.19 0 0 0 0 0.2386 1 20771 20771 0.0082765 0 1 45869 3154 30502 30522 45152 45152 0.18136988621711225 TILVLLIFY 9 Unmodified _TILVLLIFY_ 0 0 0 tr|U7SNI1|U7SNI1_FUSNUGAFdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01767PE=4SV=1 tr|U7SNI1|U7SNI1_FUSNUGAFdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01767PE=4SV=1 tr|U7SNI1|U7SNI1_FUSNUGAFdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01767PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7741088867188 2 547.846636 1093.67872 NaN NaN NaN NaN NaN NaN NaN 68.033 1 68.033 67.533 68.533 0 0 0 0 0.19634 1 13152 13152 0.40827 0 1 45870 26026 30503 30523 45153 45153 0.13562722216101974 TIMDYEEF 8 Unmodified _TIMDYEEF_ 0 0 0 nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B nc|ENSG00000179750|Q9UH17-2|APOBEC3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6889038085938 2 524.220608 1046.42666 -0.19359 -0.00010148 -1.1651 -0.00061079 -1.3587 -0.00071227 524.2199214727342 101.14 0.70703 96.838 96.469 97.176 -4.297 45 20 3 0 0 0 0.96284 1 19312 19312 8.5933 3.8373 1 5187800 45871 6641;12490 30504 30524 45154 45154 -0.09469283927592187 TIMDYEEF 8 Unmodified _TIMDYEEF_ 0 0 0 nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B nc|ENSG00000179750|Q9UH17-2|APOBEC3B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 524.220608 1046.42666 -0.14313 -7.5031E-05 -1.2744 -0.00066807 -1.4175 -0.0007431 524.2199511571433 100.94 0.73143 96.783 96.461 97.192 -4.1594 -0.027555 -6.1761E-05 NaN 8.5933 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4693500 45872 6641;12490 30504 30524 -0.09469283927592187 TINARKTLK 9 Unmodified _TINARKTLK_ 0 0 0 OR4S1|p.M79Dfs*4|1|0.06|ENSG00000176555|chr11:48306453-48306454|-/A|frameshift_variant;OR4S1|p.F210Lfs*12|1|0.23|ENSG00000176555|chr11:48306847-48306847|T/-|frameshift_variant;OR4S1|p.M253Cfs*23|1|0.25|ENSG00000176555|chr11:48306973-48306973|C/-|frameshift_variant;ENSG00000176555|ENST00000319988|OR4S1 OR4S1|p.M79Dfs*4|1|0.06|ENSG00000176555|chr11:48306453-48306454|-/A|frameshift_variant OR4S1|p.M79Dfs*4|1|0.06|ENSG00000176555|chr11:48306453-48306454|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2728881835938 2 522.82984 1043.64513 -0.028453 -1.4876E-05 1.623 0.00084854 1.5945 0.00083366 523.3302636377896 159.49 0.21071 154.7 154.55 154.76 -4.7952 6 5 2 0 0 0 0.76271 1 31688 31688 14.838 3.198 1 584070 45873 6473 30505 30525 45155 45155 0.1250511349687713 TINGHNAEV 9 Unmodified _TINGHNAEV_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7384033203125 2 477.735606 953.456658 -0.065938 -3.1501E-05 -0.31424 -0.00015012 -0.38018 -0.00018163 477.73543994135247 23.455 0.66436 23.455 23.199 23.863 0 51 18 4 0 0 0 0.48707 1 4027 4027 20.415 3.4722 1 23184000 45874 3233 30506 30526 45156 45156 -0.021931641473884156 TINGHNAEV 9 Unmodified _TINGHNAEV_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73846435546875 2 477.735606 953.456658 -0.16062 -7.6734E-05 -0.23725 -0.00011334 -0.39788 -0.00019008 477.7354459547916 25.092 0.72511 23.239 23.015 23.74 -1.8534 40 20 3 0 0 0 0.10537 1 4097 4097 40.317 35.713 1 13144000 45875 3233 30506 30526 45157 45157 -0.021931641473884156 TINGHNAEV 9 Unmodified _TINGHNAEV_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.735606 953.456658 -0.065938 -3.1501E-05 -0.31424 -0.00015012 -0.38018 -0.00018163 477.73543994135247 23.455 0.66436 23.455 23.199 23.863 0 0.10684 1.6331E-05 NaN 40.317 51 18 4 NaN NaN NaN NaN 0 NaN NaN 0 23184000 45876 3233 30506 30526 -0.021931641473884156 TINLSVVAL 9 Unmodified _TINLSVVAL_ 0 0 0 REV__ENSG00000146648|ENST00000275493|EGFR REV__ENSG00000146648|ENST00000275493|EGFR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.259033203125 2 465.286943 928.559333 0.40953 0.00019055 -0.56638 -0.00026353 -0.15685 -7.2979E-05 465.2866485426695 99.761 0.6558 99.761 99.446 100.1 0 29 18 2 0 0 0 0.56623 1 19609 19609 11.495 0 1 2243700 + 45877 16895 30507 30527 45158 45158 0.09219528591370363 TINRLVAYE 9 Unmodified _TINRLVAYE_ 0 0 0 REV__nc|ENSG00000169402|B2RC85-2|RSPH10B2 REV__nc|ENSG00000169402|B2RC85-2|RSPH10B2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012634277344 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 91.698 1 87.604 87.104 88.104 -4.0946 0 0 0 0.23508 1 17464 17464 2.2828 0.63015 1 + 45878 17206 30508 30528 45159 45159 0.046171279889904326 TINVDDPI 8 Unmodified _TINVDDPI_ 0 0 0 REV__ENSG00000181817|ENST00000315732|LSM10 REV__ENSG00000181817|ENST00000315732|LSM10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 443.2294616699219 2 443.729458 885.444362 -0.090575 -4.0191E-05 0.45041 0.00019986 0.35984 0.00015967 443.72960754267604 79.199 0.81028 75.689 75.311 76.121 -3.5102 43 22 3 0 0 0 0.46555 1 15547 15547 4.2837 0 1 1650500 + 45879 18742 30509 30529 45160 45160 -0.00294200610437656 TIPASREAA 9 Unmodified _TIPASREAA_ 0 0 0 ENST00000579480.1_1_18:75695260-75695575:-|nuORF ENST00000579480.1_1_18:75695260-75695575:-|nuORF ENST00000579480.1_1_18:75695260-75695575:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23052978515625 2 458.248349 914.482145 -0.10656 -4.8832E-05 0.16822 7.7086E-05 0.061655 2.8253E-05 458.248536691792 45.043 0.32508 42.253 42.095 42.42 -2.79 11 8 2 0 0 0 0.50943 1 8494 8494 0.40827 0 1 425660 45880 11485 30510 30530 45161 45161 0.021483103750369992 TIPEPPLPA 9 Unmodified _TIPEPPLPA_ 0 0 0 TRIOBP|p.Q326Kfs*553|1|0.36|ENSG00000100106|chr22:37723530-37723530|C/-|frameshift_variant TRIOBP|p.Q326Kfs*553|1|0.36|ENSG00000100106|chr22:37723530-37723530|C/-|frameshift_variant TRIOBP|p.Q326Kfs*553|1|0.36|ENSG00000100106|chr22:37723530-37723530|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.146484375 3 312.179654 933.517133 NaN NaN NaN NaN NaN NaN NaN 156.93 1 151.66 151.16 152.16 -5.2712 0 0 0 0.23508 1 30443 30443 1.1933 0 1 45881 26523 30511 30531 45162 45162 0.047715531829908286 TIPHSNLKLE 10 Unmodified _TIPHSNLKLE_ 0 0 0 REV__GBP6|p.G191S|1|0.17|ENSG00000183347|chr1:89378559-89378559|G/A|missense_variant REV__GBP6|p.G191S|1|0.17|ENSG00000183347|chr1:89378559-89378559|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3223876953125 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 141.14 1 136.49 135.99 136.99 -4.6493 0 0 0 0.22588 1 27872 27872 9.3831 2.0939 1 + 45882 23564 30512 30532 45163 45163 0.06533086051786086 TIPHTHFSF 9 Unmodified _TIPHTHFSF_ 0 0 0 ENST00000549739.1_1_12:53579221-53580407:+|nuORF ENST00000549739.1_1_12:53579221-53580407:+|nuORF ENST00000549739.1_1_12:53579221-53580407:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7848510742188 2 543.771991 1085.52943 NaN NaN NaN NaN NaN NaN NaN 146.66 1 141.97 141.47 142.47 -4.6868 0 0 0 0.19684 1 29091 29091 0.40827 0 1 45883 11166 30513 30533 45164 45164 -0.009914103539585994 TIPSGGNDLPP 11 Unmodified _TIPSGGNDLPP_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2734985351562 2 534.272021 1066.52949 -0.05549 -2.9647E-05 1.7454 0.00093249 1.6899 0.00090285 534.2729525009886 50.844 0.78306 47.961 47.427 48.21 -2.8824 37 18 3 0 0 0 0.61937 1 9608 9608 17.113 3.605 1 3292600 + 45884 17221 30514 30534 45165 45165 -0.0011145514463350992 TIQCSNQY 8 Unmodified _TIQCSNQY_ 0 0 0 REV__ENST00000281419.7_1_2:9543485-9543617:+|nuORF REV__ENST00000281419.7_1_2:9543485-9543617:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7287292480469 2 478.710742 955.406931 NaN NaN NaN NaN NaN NaN NaN 143.92 1 138.85 138.35 139.35 -5.0671 0 0 0 0.21452 1 27749 27749 13.508 2.684 1 + 45885 20307 30515 30535 45166 45166 -0.0725561514769879 TIQELKEKIAY 11 Unmodified _TIQELKEKIAY_ 0 0 0 nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1 nc|ENSG00000143367|Q9NNX1-3|TUFT1 nc|ENSG00000143367|Q9NNX1-3|TUFT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 668.2589721679688 2 668.37956 1334.74457 NaN NaN NaN NaN NaN NaN NaN 174.82 1 174.82 174.32 175.32 0 0 0 0 0.22632 1 36203 36203 0.172 0.12821 1 45886 4476 30516 30536 45167 45167 0.09058466600345128 TIQITPMGAY 10 Unmodified _TIQITPMGAY_ 0 0 0 REV__ENSG00000119285|ENST00000366582|HEATR1 REV__ENSG00000119285|ENST00000366582|HEATR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7777099609375 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 86.386 1 82.435 81.935 82.935 -3.9503 0 0 0 0.22569 1 16444 16444 15.847 3.3156 1 + 45887 15575 30517 30537 45168 45168 0.004749635057351043 TIQIYPPP 8 Unmodified _TIQIYPPP_ 0 0 0 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 21.991 1 21.991 21.491 22.491 0 0 0 0 0.21486 1 3703 3703 1.8442 0 1 45888 12261 30518 30538 45169 45169 0.03991570528569355 TIQIYPPP 8 Unmodified _TIQIYPPP_ 0 0 0 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700439453125 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 22.25 1 22.25 21.75 22.75 0 0 0 0 0.21486 1 3757 3757 1.8442 0 1 45889 12261 30518 30538 45170 45170 0.03991570528569355 TIQIYPPP 8 Unmodified _TIQIYPPP_ 0 0 0 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2305908203125 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 26.498 1 26.498 25.998 26.998 0 0 0 0 0.21486 1 4641 4641 1.8442 0 1 45890 12261 30518 30538 45171 45171 0.03991570528569355 TIQIYPPP 8 Unmodified _TIQIYPPP_ 0 0 0 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.22235107421875 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 26.713 1 26.713 26.213 27.213 0 0 0 0 0.21486 1 4687 4687 1.8442 0 1 45891 12261 30518 30538 45172 45172 0.03991570528569355 TIQIYPPP 8 Unmodified _TIQIYPPP_ 0 0 0 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1635437011719 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 28.363 1 26.608 26.108 27.108 -1.7552 0 0 0 0.21486 1 4784 4784 1.8442 0 1 45892 12261 30518 30538 45173 45173 0.03991570528569355 TIQIYPPP 8 Unmodified _TIQIYPPP_ 0 0 0 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16455078125 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 39.407 1 36.965 36.465 37.465 -2.4419 0 0 0 0.21486 1 7038 7038 1.8442 0 1 45893 12261 30518 30538 45174 45174 0.03991570528569355 TIQIYPPP 8 Unmodified _TIQIYPPP_ 0 0 0 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 nc|ENSG00000102554|Q13887-3|KLF5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1726379394531 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 177.09 1 172.21 171.71 172.71 -4.8739 0 0 0 0.21486 1 35238 35238 0.45834 0 1 45894 12261 30518 30538 45175 45175 0.03991570528569355 TIQKEDMC 8 Unmodified _TIQKEDMC_ 0 0 0 REV__nc|ENSG00000163606|Q8TD46-3|CD200R1 REV__nc|ENSG00000163606|Q8TD46-3|CD200R1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.163330078125 3 323.145627 966.415053 NaN NaN NaN NaN NaN NaN NaN 121.32 1 116.63 116.13 117.13 -4.6873 0 0 0 0.21486 1 23290 23290 0.45834 0 1 + 45895 17589 30519 30539 45176 45176 -0.06949804222574585 TIQLPTELMEM 11 Unmodified _TIQLPTELMEM_ 0 0 0 REV__ENSG00000143171|ENST00000359842|RXRG REV__ENSG00000143171|ENST00000359842|RXRG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 435.8774108886719 3 435.885813 1304.63561 NaN NaN NaN NaN NaN NaN NaN 9.7585 1 9.7585 9.2585 10.259 0 0 0 0 0.23698 1 1163 1163 0 0 1 + 45896 16703 30520 30540 45177 45177 -0.004522036858588763 TIQQDSNKL 9 Unmodified _TIQQDSNKL_ 0 0 0 nc|ENSG00000126787|Q15398-1|DLGAP5;DLGAP5|p.E743Rfs*25|1|0.45|ENSG00000126787|chr14:55151836-55151837|-/T|frameshift_variant;nc|ENSG00000126787|Q15398-3|DLGAP5;ENSG00000126787|ENST00000247191|DLGAP5 nc|ENSG00000126787|Q15398-1|DLGAP5 nc|ENSG00000126787|Q15398-1|DLGAP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.694580078125 2 523.77747 1045.54039 -0.14575 -7.6342E-05 0.80054 0.0004193 0.65479 0.00034296 523.7777076405137 98.569 0.6238 94.437 94.123 94.747 -4.1326 25 17 2 0 0 0 0.77732 1 19295 19295 4.3292 0 1 1857200 45897 847 30521 30541 45178 45178 0.019439472296653548 TIRDVDTLY 9 Unmodified _TIRDVDTLY_ 0 0 0 REV__GNA11|p.A168T|1|0.18|ENSG00000088256|chr19:3114969-3114969|G/A|missense_variant REV__GNA11|p.A168T|1|0.18|ENSG00000088256|chr19:3114969-3114969|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7932739257812 2 548.287671 1094.56079 0.095775 5.2512E-05 0.06613 3.6258E-05 0.16191 8.8771E-05 548.2876960558666 48.563 0.51825 45.694 45.453 45.971 -2.869 35 14 3 0 0 0 0.11171 1 9202 9202 68.081 9.4019 1 4085700 + 45898 23581 30522 30542 45179 45179 0.01729117889499321 TIRDVDTLY 9 Unmodified _TIRDVDTLY_ 0 0 0 REV__GNA11|p.A168T|1|0.18|ENSG00000088256|chr19:3114969-3114969|G/A|missense_variant REV__GNA11|p.A168T|1|0.18|ENSG00000088256|chr19:3114969-3114969|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 548.287671 1094.56079 0.6429 0.00035249 -0.52581 -0.00028829 0.11709 6.4198E-05 548.2873438874533 45.602 0.4517 45.602 45.378 45.83 0 -0.076213 -0.00054867 NaN 68.081 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4149600 + 45899 23581 30522 30542 0.01729117889499321 TIRVLTLVR 9 Unmodified _TIRVLTLVR_ 0 0 0 REV__VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant REV__VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55712890625 3 357.572998 1069.69716 -0.75735 -0.00027081 1.0879 0.00038899 0.33052 0.00011818 357.90758594718795 108.83 0.24276 104.45 104.26 104.5 -4.3776 8 6 2 0 0 0 0.64764 1 21441 21441 0.96228 0 1 638940 + 45900 16123 30523 30543 45180 45180 0.16510276910639732 TIRYNGRW 8 Unmodified _TIRYNGRW_ 0 0 0 REV__ENST00000357277.7_1_X:17043263-17065533:+|nuORF REV__ENST00000357277.7_1_X:17043263-17065533:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2677612304688 2 533.283057 1064.55156 NaN NaN NaN NaN NaN NaN NaN 146.41 1 141.41 140.91 141.91 -5 0 0 0 0.2343 1 28334 28334 0.0082765 0.004896 1 + 45901 20825 30524 30544 45181 45181 0.021868141144750552 TISDDAGGEIC 11 Unmodified _TISDDAGGEIC_ 0 0 0 REV__HAO2|p.F24C|1|0.38|ENSG00000116882|chr1:119381156-119381156|T/G|missense_variant REV__HAO2|p.F24C|1|0.38|ENSG00000116882|chr1:119381156-119381156|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2653198242188 2 540.729329 1079.4441 0.29778 0.00016102 3.4815 0.0018825 3.7792 0.0020435 540.7313488201613 156.5 0.10046 156.5 156.42 156.52 0 4 2 2 0 0 0 0.68099 1 31397 31397 13.042 4.4492 1 814510 + 45902 23601 30525 30545 45182 45182 -0.09243988392586289 TISDTPFMHM 10 Unmodified _TISDTPFMHM_ 0 0 0 TLR6|p.I344M|1|0.27|ENSG00000174130|chr4:38828442-38828442|T/C|missense_variant TLR6|p.I344M|1|0.27|ENSG00000174130|chr4:38828442-38828442|T/C|missense_variant TLR6|p.I344M|1|0.27|ENSG00000174130|chr4:38828442-38828442|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.249755859375 2 590.262284 1178.51002 NaN NaN NaN NaN NaN NaN NaN 159.3 1 154.51 154.01 155.01 -4.7952 0 0 0 0.22535 1 31671 31671 20.454 4.3045 1 45903 25855 30526 30546 45183 45183 -0.07209870751398739 TISEELSSSL 10 Unmodified _TISEELSSSL_ 0 0 0 REV__nc|ENSG00000188107|Q5T1H1|EYS REV__nc|ENSG00000188107|Q5T1H1|EYS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2847900390625 2 533.269144 1064.52373 NaN NaN NaN NaN NaN NaN NaN 159.75 1 154.52 154.02 155.02 -5.2299 0 0 0 0.22569 1 31008 31008 15.847 0 1 + 45904 24215 30527 30547 45184 45184 -0.005945984469462928 TISGSGWLRV 10 Unmodified _TISGSGWLRV_ 0 0 0 REV__ENST00000423353.1_2_6:170863730-170866045:+|nuORF REV__ENST00000423353.1_2_6:170863730-170866045:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 359.5103759765625 3 359.201341 1074.58219 -0.22859 -8.211E-05 0.37532 0.00013481 0.14673 5.2705E-05 359.20145450907376 31.641 0.69907 31.641 31.18 31.879 0 50 19 4 0 0 0 1.1254 1 5625 5625 0.84494 0.78095 1 5533500 + 45905 21533 30528 30548 45185 45185 0.047885477088584594 TISGSGWLRV 10 Unmodified _TISGSGWLRV_ 0 0 0 REV__ENST00000423353.1_2_6:170863730-170866045:+|nuORF REV__ENST00000423353.1_2_6:170863730-170866045:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.201341 1074.58219 -0.29937 -0.00010753 0.36832 0.0001323 0.068951 2.4767E-05 359.20141717643213 33.701 0.58721 31.384 31.043 31.63 -2.3175 -0.062093 0.00013842 NaN 0.84494 52 16 4 NaN NaN NaN NaN 0 NaN NaN 0 6360300 + 45906 21533 30528 30548 0.047885477088584594 TISGSGWLRV 10 Unmodified _TISGSGWLRV_ 0 0 0 REV__ENST00000423353.1_2_6:170863730-170866045:+|nuORF REV__ENST00000423353.1_2_6:170863730-170866045:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.201341 1074.58219 0.22406 8.0484E-05 -0.14463 -5.1951E-05 0.079435 2.8533E-05 359.2012600962358 33.533 0.76895 31.386 30.902 31.67 -2.1468 -0.059692 -0.00041433 NaN 0.84494 56 21 4 NaN NaN NaN NaN 0 NaN NaN 0 7864600 + 45907 21533 30528 30548 0.047885477088584594 TISGSGWLRV 10 Unmodified _TISGSGWLRV_ 0 0 0 REV__ENST00000423353.1_2_6:170863730-170866045:+|nuORF REV__ENST00000423353.1_2_6:170863730-170866045:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 359.201341 1074.58219 -0.28695 -0.00010307 0.39599 0.00014224 0.10904 3.9168E-05 359.2014499757604 33.588 0.7677 31.373 31.044 31.812 -2.2158 -0.073517 0.00016824 NaN 0.84494 54 21 4 NaN NaN NaN NaN 0 NaN NaN 0 6626700 + 45908 21533 30528 30548 0.047885477088584594 TISKAGQLVY 10 Unmodified _TISKAGQLVY_ 0 0 0 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2831420898438 2 540.308406 1078.60226 0.29074 0.00015709 0.012317 6.655E-06 0.30305 0.00016374 540.3083302607614 161.96 0.95721 156.81 156.31 157.26 -5.1438 92 27 4 0 0 0 0.71021 1 31359 31359 10.151 0.076642 1 79833000 + 45909 17709 30529 30549 45186 45186 0.0661029864882039 TISKKIKY 8 Unmodified _TISKKIKY_ 0 0 0 REV__MAGEB2|p.V132I|1|0.44|ENSG00000099399|chrX:30218974-30218974|G/A|missense_variant REV__MAGEB2|p.V132I|1|0.44|ENSG00000099399|chrX:30218974-30218974|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2649230957031 2 490.810585 979.606617 0.037416 1.8364E-05 0.10746 5.2741E-05 0.14487 7.1106E-05 490.81064797536783 95.45 0.48565 95.45 95.142 95.628 0 19 13 2 0 0 0 0.98792 1 18673 18673 5.2307 0 1 1016400 + 45910 23830 30530 30550 45187 45187 0.11599807862364742 TISLTNWKCN 10 Unmodified _TISLTNWKCN_ 0 0 0 REV__DGKK|p.D376N|1|0.22|ENSG00000274588|chrX:50403550-50403550|C/T|missense_variant REV__DGKK|p.D376N|1|0.22|ENSG00000274588|chrX:50403550-50403550|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2634887695312 2 590.294973 1178.57539 NaN NaN NaN NaN NaN NaN NaN 152.22 1 147.47 146.97 147.97 -4.7523 0 0 0 0.22588 1 30245 30245 10.074 1.3285 1 + 45911 13673 30531 30551 45188 45188 -0.006751332340172667 TISSLKQE 8 Unmodified _TISSLKQE_ 0 0 0 ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1;nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1 ENST00000473581.5_1_X:48834665-48847670:-|nuORF ENST00000473581.5_1_X:48834665-48847670:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7530212402344 2 453.250557 904.486562 0.040268 1.8251E-05 -0.15717 -7.1237E-05 -0.1169 -5.2985E-05 453.25029125502584 92.743 0.50688 88.899 88.616 89.123 -3.844 22 14 2 0 0 0 8448 1 17749 17749 6.2058 0 1 1513400 45912 1404 30532 30552 45189 45189 0.030497747979552514 TISTVQEK 8 Unmodified _TISTVQEK_ 0 0 0 ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENSG00000121858|ENST00000241261|TNFSF10 ENST00000494851.5_1_3:172226989-172241222:-|nuORF ENST00000494851.5_1_3:172226989-172241222:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75213623046875 2 453.250557 904.486562 0.040268 1.8251E-05 -0.15717 -7.1237E-05 -0.1169 -5.2985E-05 453.25029125502584 92.743 0.50688 88.899 88.616 89.123 -3.844 22 14 2 0 0 0 8448 1 17806 17806 0.25148 0 1 1513400 45913 3193 30533 30553 45190 45190 0.030497747979552514 TISVKKNLI 9 Unmodified _TISVKKNLI_ 0 0 0 REV__ENSG00000204947|ENST00000378061|ZNF425 REV__ENSG00000204947|ENST00000378061|ZNF425 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.525390625 3 339.221853 1014.64373 NaN NaN NaN NaN NaN NaN NaN 27.026 1 25.244 24.744 25.744 -1.7821 0 0 0 0.19677 1 4790 4790 0.40827 0.15679 1 + 45914 19573 30534 30554 45191 45191 0.1369947940813745 TISWKHFY 8 Unmodified _TISWKHFY_ 0 0 0 ENST00000395699.3_1_7:44922485-44922656:-|nuORF ENST00000395699.3_1_7:44922485-44922656:-|nuORF ENST00000395699.3_1_7:44922485-44922656:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.275146484375 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 161.47 1 156.32 155.82 156.82 -5.1438 0 0 0 0.23711 1 31361 31361 0.12286 0 1 45915 9433 30535 30555 45192 45192 0.0022177765142714634 TITERTVDI 9 Unmodified _TITERTVDI_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6896362304688 2 524.287671 1046.56079 -0.55961 -0.0002934 0.89357 0.00046849 0.33396 0.00017509 524.288039180932 109.98 0.58721 105.61 105.34 105.93 -4.3776 33 16 3 0 0 0 0.35995 1 21728 21728 1.2148 0.80657 1 4997100 + 45916 17221 30536 30556 45193 45193 0.039371178894725745 TITERTVDI 9 Unmodified _TITERTVDI_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6895141601562 2 524.287671 1046.56079 0.69279 0.00036322 -0.52822 -0.00027694 0.16457 8.628E-05 524.2873351093216 109.88 0.83649 105.7 105.44 106.27 -4.1826 39 23 2 0 0 0 0.52768 1 21183 21183 1.2148 0 1 1818000 + 45917 17221 30536 30556 45194 45194 0.039371178894725745 TITVEPRN 8 Unmodified _TITVEPRN_ 0 0 0 REV__nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9 REV__nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2545166015625 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 95.85 1 91.659 91.159 92.159 -4.1911 0 0 0 0.19492 1 18295 18295 26.341 1.6674 1 + 45918 19890 30537 30557 45195 45195 0.03068596892092046 TIVAVMVMMV 10 Unmodified _TIVAVMVMMV_ 0 0 0 REV__PMEPA1|p.V56A|1|0.44|ENSG00000124225|chr20:57659640-57659640|A/G|missense_variant REV__PMEPA1|p.V56A|1|0.44|ENSG00000124225|chr20:57659640-57659640|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.771728515625 2 547.294542 1092.57453 0.74314 0.00040672 2.3007 0.0012592 3.0438 0.0016659 547.29646829571 101.06 0.46342 101.06 100.83 101.29 0 26 12 3 0 0 0 0.37929 1 19801 19801 30.637 0 1 3998500 + 45919 24491 30538 30558 45196 45196 0.03194612801053154 TIVDIVGSYFM 11 Unmodified _TIVDIVGSYFM_ 0 0 0 REV__ENST00000523701.1_1_8:104413742-104414267:-|nuORF REV__ENST00000523701.1_1_8:104413742-104414267:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7636108398438 2 622.815207 1243.61586 NaN NaN NaN NaN NaN NaN NaN 97.125 1 97.125 96.625 97.625 0 0 0 0 0.22943 1 19031 19031 8.7454 1.4562 1 + 45920 17725 30539 30559 45197 45197 0.0037978836573984154 TIVVPLIMLLG 11 Unmodified _TIVVPLIMLLG_ 0 0 0 REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1 REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 584.87060546875 2 584.872328 1167.7301 NaN NaN NaN NaN NaN NaN NaN 152.49 1 152.49 151.99 152.99 0 0 0 0 0.23634 1 30543 30543 3.2813 2.9307 1 + 45921 25327 30540 30560 45198 45198 0.1529472291847469 TIWKKRRKKK 10 Unmodified _TIWKKRRKKK_ 0 0 0 REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22589111328125 3 457.973496 1370.89866 NaN NaN NaN NaN NaN NaN NaN 45.289 1 42.499 41.999 42.999 -2.79 0 0 0 0.22588 1 8525 8525 0.69767 0.53834 1 + 45922 21697 30541 30561 45199 45199 0.22804385666995586 TIYERAGRV 9 Unmodified _TIYERAGRV_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20072298-20072553:+|nuORF;ENSG00000116039|ENST00000234396|ATP6V1B1 ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26904296875 2 532.795998 1063.57744 0.0053309 2.8403E-06 0.095637 5.0955E-05 0.10097 5.3795E-05 532.7959802242206 53.197 0.78789 50.101 49.656 50.444 -3.0954 60 22 4 0 0 0 0.5428 1 9784 9784 4.897 0 1 5966500 45923 4700;2903 30542 30562 45200 45200 0.048196635660815446 TIYSGADRY 9 Unmodified _TIYSGADRY_ 0 0 0 ENSG00000123810|ENST00000243578|B9D2 ENSG00000123810|ENST00000243578|B9D2 ENSG00000123810|ENST00000243578|B9D2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.697998046875 2 523.251089 1044.48762 -0.41096 -0.00021504 1.2687 0.00066385 0.85773 0.00044881 523.2515463010486 64.173 0.28288 60.758 60.563 60.846 -3.4158 9 7 2 0 0 0 0.84208 1 12013 12013 7.2892 0 1 577490 45924 3282 30543 30563 45201 45201 -0.032840108331583906 TIYSGADRY 9 Unmodified _TIYSGADRY_ 0 0 0 ENSG00000123810|ENST00000243578|B9D2 ENSG00000123810|ENST00000243578|B9D2 ENSG00000123810|ENST00000243578|B9D2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.251089 1044.48762 -0.14074 -7.364E-05 0.41511 0.0002172 0.27437 0.00014356 523.2512272943991 63.609 0.38462 60.611 60.455 60.839 -2.9975 -0.073243 -0.00024867 NaN 7.2892 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 789190 45925 3282 30543 30563 -0.032840108331583906 TIYTTIRRV 9 Unmodified _TIYTTIRRV_ 0 0 0 NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant;NBEA|p.N854Kfs*18|1|0.22|ENSG00000172915|chr13:35156110-35156111|-/A|frameshift_variant;NBEA|p.N1121Kfs*2|1|0.35|ENSG00000172915|chr13:35159525-35159526|-/A|frameshift_variant;NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant;NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant;nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant NBEA|p.N718Kfs*4|1|0.12|ENSG00000172915|chr13:35118380-35118381|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.212890625 3 374.892507 1121.65569 -0.64914 -0.00024336 0.41616 0.00015602 -0.23297 -8.7339E-05 374.89262007001196 41.732 0.73359 39.126 38.807 39.54 -2.606 58 20 4 0 0 0 0.59831 1 7566 7566 0.0033805 0 1 5531000 45926 6251 30544 30564 45202 45202 0.09973096151315985 TKARKRRRRRR 11 Unmodified _TKARKRRRRRR_ 0 0 0 nc|ENSG00000105549|Q9P2T0-2|SPMAP2;ENSG00000105549|ENST00000342640|THEG nc|ENSG00000105549|Q9P2T0-2|SPMAP2 nc|ENSG00000105549|Q9P2T0-2|SPMAP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 514.003173828125 3 514.004963 1538.99306 NaN NaN NaN NaN NaN NaN NaN 120.82 1 116.36 115.86 116.86 -4.467 0 0 0 0.22632 1 23265 23265 0 0 1 45927 2317 30545 30565 45203 45203 0.24512337261694483 TKCFEPPQ 8 Unmodified _TKCFEPPQ_ 0 0 0 CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant;CYSLTR1|p.N224Ifs*9|1|0.59|ENSG00000173198|chrX:78273076-78273076|T/-|frameshift_variant;ENSG00000173198|ENST00000373304|CYSLTR1 CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.12713623046875 3 317.153111 948.437503 NaN NaN NaN NaN NaN NaN NaN 44.234 1 41.468 40.968 41.968 -2.7661 0 0 0 0.21486 1 8002 8002 3.2813 0.28607 1 45928 773 30546 30566 45204 45204 -0.03877836762649167 TKCFEPPQ 8 Unmodified _TKCFEPPQ_ 0 0 0 CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant;CYSLTR1|p.N224Ifs*9|1|0.59|ENSG00000173198|chrX:78273076-78273076|T/-|frameshift_variant;ENSG00000173198|ENST00000373304|CYSLTR1 CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant CYSLTR1|p.K219Nfs*3|1|0.33|ENSG00000173198|chrX:78273090-78273090|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1532897949219 3 317.153111 948.437503 NaN NaN NaN NaN NaN NaN NaN 44.648 1 41.882 41.382 42.382 -2.7661 0 0 0 0.21486 1 8088 8088 3.2813 0.28607 1 45929 773 30546 30566 45205 45205 -0.03877836762649167 TKCGGQGA 8 Unmodified _TKCGGQGA_ 0 0 0 REV__ENST00000457671.1_1_1:161860623-161860854:+|nuORF REV__ENST00000457671.1_1_1:161860623-161860854:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.15362548828125 2 361.168513 720.322473 NaN NaN NaN NaN NaN NaN NaN 136.25 1 131.61 131.11 132.11 -4.6399 0 0 0 0.21486 1 26884 26884 2.3027 1.5091 1 + 45930 21860 30547 30567 45206 45206 -0.0488752117379363 TKCGILLVR 9 Unmodified _TKCGILLVR_ 0 0 0 REV__ENSG00000172602|ENST00000309739|RND1 REV__ENSG00000172602|ENST00000309739|RND1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 335.173828125 3 334.8758 1001.60557 NaN NaN NaN NaN NaN NaN NaN 40.039 1 37.49 36.99 37.99 -2.5491 0 0 0 0.19622 1 7452 7452 0.0033805 0 1 + 45931 18297 30548 30568 45207 45207 0.10483270221834573 TKDNATLTV 9 Unmodified _TKDNATLTV_ 0 0 0 REV__ENSG00000064115|ENST00000343028|TM7SF3 REV__ENSG00000064115|ENST00000343028|TM7SF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77069091796875 2 481.761289 961.508025 -0.066683 -3.2125E-05 0.35394 0.00017052 0.28726 0.00013839 481.76144636370134 103.38 0.67719 99.197 98.907 99.584 -4.1861 30 19 2 0 0 0 0.52396 1 20359 20359 18.146 1.0335 1 1749300 + 45932 14163 30549 30569 45208 45208 0.02573159826670235 TKEKKGQEF 9 Unmodified _TKEKKGQEF_ 0 0 0 REV__LRP2|p.G4301E|1|0.76|ENSG00000081479|chr2:169145833-169145833|C/T|missense_variant REV__LRP2|p.G4301E|1|0.76|ENSG00000081479|chr2:169145833-169145833|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.781982421875 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 134.21 1 129.39 128.89 129.89 -4.8175 0 0 0 0.19711 1 25838 25838 1.2148 0.33965 1 + 45933 23815 30550 30570 45209 45209 0.03372824126381602 TKEKVSTQDQP 11 Unmodified _TKEKVSTQDQP_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7664184570312 2 630.825149 1259.63574 NaN NaN NaN NaN NaN NaN NaN 171.74 1 166.95 166.45 167.45 -4.7898 0 0 0 0.22421 1 34939 34939 12.873 2.0731 1 45934 3680 30551 30571 45210 45210 0.016312556300590586 TKEQTLETP 9 Unmodified _TKEQTLETP_ 0 0 0 REV__THSD7B|p.A1522Sfs*2|1|0.16|ENSG00000144229|chr2:137663475-137663476|-/A|frameshift_variant REV__THSD7B|p.A1522Sfs*2|1|0.16|ENSG00000144229|chr2:137663475-137663476|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.693115234375 2 523.771854 1045.52915 -0.65248 -0.00034175 1.5159 0.00079398 0.8634 0.00045222 523.7721711050659 22.277 1.1827 20.824 19.867 21.049 -1.4535 67 33 4 0 0 0 0.46882 2 3513 3513;3518 21.537 1.1224 1 1332400 + 45935 16774 30552 30572 45211;45212 45211 0.008211251355305649 TKESVTQAV 9 Unmodified _TKESVTQAV_ 0 0 0 REV__ENST00000529970.5_1_11:120278459-120348246:+|nuORF REV__ENST00000529970.5_1_11:120278459-120348246:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2550354003906 2 481.761289 961.508025 0.047919 2.3085E-05 -0.58551 -0.00028208 -0.53759 -0.00025899 481.7609679181657 24.445 0.51355 24.445 24.267 24.781 0 32 14 3 0 0 0 0.58699 1 4187 4187 19.257 4.4187 1 6364400 + 45936 13109 30553 30573 45213 45213 0.025731598266588662 TKFLIILL 8 Unmodified _TKFLIILL_ 0 0 0 ENST00000423082.1_1_1:111550392-111550686:-|nuORF ENST00000423082.1_1_1:111550392-111550686:-|nuORF ENST00000423082.1_1_1:111550392-111550686:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24322509765625 2 480.828246 959.64194 -0.14704 -7.0701E-05 0.36761 0.00017676 0.22057 0.00010606 480.82837287837333 112.83 0.67896 108.38 108.04 108.72 -4.4539 32 18 2 0 0 0 0.84608 1 22265 22265 2.3027 0 1 3393900 45937 9687 30554 30574 45214 45214 0.16050470390189275 TKGAGQTV 8 Unmodified _TKGAGQTV_ 0 0 0 tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2099304199219 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 175.57 1 170.78 170.28 171.28 -4.7898 0 0 0 0.2396 1 35898 35898 0.12286 0 1 45938 26092 30555 30575 45215 45215 0.018129672835129895 TKGRSRPKK 9 Unmodified _TKGRSRPKK_ 0 0 0 REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 353.2250671386719 3 353.22448 1056.65161 NaN NaN NaN NaN NaN NaN NaN 25.46 1 25.46 24.96 25.96 0 0 0 0 0.19699 1 4419 4419 0.40827 0 1 + 45939 23940 30556 30576 45216 45216 0.12555051448271115 TKHCRTSRL 9 Unmodified _TKHCRTSRL_ 0 0 0 ENST00000394105.6_1_9:128111695-128112590:+|nuORF ENST00000394105.6_1_9:128111695-128112590:+|nuORF ENST00000394105.6_1_9:128111695-128112590:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 368.13836669921875 3 367.869708 1100.5873 -0.26 -9.5647E-05 -0.29154 -0.00010725 -0.55154 -0.0002029 367.8694267106894 96.337 0.61908 96.337 96.081 96.7 0 26 17 2 0 0 0 0.81221 1 18829 18829 1.1933 0 1 3376000 45940 9402 30557 30577 45217 45217 0.04102528299813457 TKHCRTSRL 9 Unmodified _TKHCRTSRL_ 0 0 0 ENST00000394105.6_1_9:128111695-128112590:+|nuORF ENST00000394105.6_1_9:128111695-128112590:+|nuORF ENST00000394105.6_1_9:128111695-128112590:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 367.869708 1100.5873 -0.22069 -8.1184E-05 0.47807 0.00017587 0.25738 9.4682E-05 367.8695034854378 100.19 0.9424 96.03 95.519 96.461 -4.1594 -0.1044 0.00092026 NaN 1.1933 41 26 2 NaN NaN NaN NaN 0 NaN NaN 0 3800300 45941 9402 30557 30577 0.04102528299813457 TKHCRTSRL 9 Unmodified _TKHCRTSRL_ 0 0 0 ENST00000394105.6_1_9:128111695-128112590:+|nuORF ENST00000394105.6_1_9:128111695-128112590:+|nuORF ENST00000394105.6_1_9:128111695-128112590:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 367.869708 1100.5873 0.27436 0.00010093 -0.6842 -0.0002517 -0.40984 -0.00015077 367.86932861917126 100.33 0.68678 96.036 95.711 96.398 -4.297 -0.098397 -0.00036243 NaN 1.1933 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3589600 45942 9402 30557 30577 0.04102528299813457 TKHKKKKKKK 10 Unmodified _TKHKKKKKKK_ 0 0 0 REV__ENSG00000189134|ENST00000343684|NKAPL REV__ENSG00000189134|ENST00000343684|NKAPL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 641.4220581054688 2 641.445706 1280.87686 NaN NaN NaN NaN NaN NaN NaN 177.47 1 177.47 176.97 177.97 0 0 0 0 0.22588 1 36762 36762 0 0 1 + 45943 19196 30558 30578 45218 45218 0.24765580918415253 TKHLRVAA 8 Unmodified _TKHLRVAA_ 0 0 0 UGT2A1|p.A471T|1|0.35|ENSG00000173610|chr4:69589545-69589545|C/T|missense_variant UGT2A1|p.A471T|1|0.35|ENSG00000173610|chr4:69589545-69589545|C/T|missense_variant UGT2A1|p.A471T|1|0.35|ENSG00000173610|chr4:69589545-69589545|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 448.3499755859375 2 448.277244 894.539935 NaN NaN NaN NaN NaN NaN NaN 55.129 1 52.245 51.745 52.745 -2.8837 0 0 0 0.21486 1 10542 10542 2.3027 0 1 45944 26549 30559 30579 45219 45219 0.08844617091131113 TKHLRVAA 8 Unmodified _TKHLRVAA_ 0 0 0 UGT2A1|p.A471T|1|0.35|ENSG00000173610|chr4:69589545-69589545|C/T|missense_variant UGT2A1|p.A471T|1|0.35|ENSG00000173610|chr4:69589545-69589545|C/T|missense_variant UGT2A1|p.A471T|1|0.35|ENSG00000173610|chr4:69589545-69589545|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 448.349365234375 2 448.277244 894.539935 NaN NaN NaN NaN NaN NaN NaN 55.53 1 52.392 51.892 52.892 -3.1377 0 0 0 0.21486 1 10311 10311 2.3027 0 1 45945 26549 30559 30579 45220 45220 0.08844617091131113 TKHTLFAK 8 Unmodified _TKHTLFAK_ 0 0 0 REV__ENST00000296785.7_1_5:72856986-72857109:-|nuORF REV__ENST00000296785.7_1_5:72856986-72857109:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 472.7873229980469 2 473.279452 944.544351 0.145 6.8624E-05 0.27968 0.00013237 0.42468 0.00020099 473.2795323862947 117.56 0.63622 113.05 112.82 113.46 -4.502 28 17 2 0 0 0 0.8748 1 23137 23137 14.838 12.195 1 1466900 + 45946 20375 30560 30580 45221 45221 0.06986081514025955 TKHTLFAK 8 Unmodified _TKHTLFAK_ 0 0 0 REV__ENST00000296785.7_1_5:72856986-72857109:-|nuORF REV__ENST00000296785.7_1_5:72856986-72857109:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 473.279452 944.544351 -0.11141 -5.2728E-05 -0.01326 -6.2755E-06 -0.12467 -5.9003E-05 473.27940183265406 113.16 0.5163 113.16 112.93 113.45 0 0.094024 0.00020827 NaN 14.838 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2069400 + 45947 20375 30560 30580 0.06986081514025955 TKHTLFAK 8 Unmodified _TKHTLFAK_ 0 0 0 REV__ENST00000296785.7_1_5:72856986-72857109:-|nuORF REV__ENST00000296785.7_1_5:72856986-72857109:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 473.279452 944.544351 0.35872 0.00016978 -0.32848 -0.00015546 0.03024 1.4312E-05 473.27918489607083 117.64 0.69963 113.03 112.72 113.42 -4.6106 -0.037681 -9.0109E-05 NaN 14.838 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 975300 + 45948 20375 30560 30580 0.06986081514025955 TKHTLFAK 8 Unmodified _TKHTLFAK_ 0 0 0 REV__ENST00000296785.7_1_5:72856986-72857109:-|nuORF REV__ENST00000296785.7_1_5:72856986-72857109:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 473.279452 944.544351 0.46252 0.0002189 -0.48564 -0.00022984 -0.023119 -1.0942E-05 473.27915371731507 117.4 0.82176 113.03 112.58 113.4 -4.367 -0.040651 -0.00023887 NaN 14.838 35 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1078500 + 45949 20375 30560 30580 0.06986081514025955 TKICDQDGNW 10 Unmodified _TKICDQDGNW_ 0 0 0 ENSG00000064989|ENST00000392370|CALCRL ENSG00000064989|ENST00000392370|CALCRL ENSG00000064989|ENST00000392370|CALCRL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2571411132812 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 60.209 1 56.986 56.486 57.486 -3.2237 0 0 0 2.8426 1 11258 11258 0.26539 0.23611 1 45950 1346 30561 30581 45222 45222 -0.07948887027441742 TKIDPTSGP 9 Unmodified _TKIDPTSGP_ 0 0 0 LMO7|p.D282Mfs*3|1|0.16|ENSG00000136153|chr13:75807821-75807821|A/-|frameshift_variant;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7 LMO7|p.D282Mfs*3|1|0.16|ENSG00000136153|chr13:75807821-75807821|A/-|frameshift_variant LMO7|p.D282Mfs*3|1|0.16|ENSG00000136153|chr13:75807821-75807821|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2293701171875 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 19.648 1 18.323 17.823 18.823 -1.3251 0 0 0 0.21065 1 3007 3007 20.454 5.6154 1 45951 3987 30562 30582 45223 45223 0.010254882809022092 TKILKLINPY 10 Unmodified _TKILKLINPY_ 0 0 0 tr|U7T4U4|U7T4U4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00558PE=4SV=1 tr|U7T4U4|U7T4U4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00558PE=4SV=1 tr|U7T4U4|U7T4U4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00558PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2744140625 2 601.878999 1201.74344 0.39102 0.00023535 -0.69147 -0.00041618 -0.30045 -0.00018083 601.8789926619178 137.9 0.31097 137.9 137.7 138.01 0 12 8 2 0 0 0 0.91149 1 27348 27348 3.5965 0 1 5522600 45952 26436 30563 30583 45224 45224 0.1506429702208152 TKIMSPLGIS 10 Unmodified _TKIMSPLGIS_ 0 0 0 nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;CACNA1C|p.E1194Gfs*8|1|0.17|ENSG00000151067|chr12:2608669-2608670|-/G|frameshift_variant;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;CACNA1C|p.V618M|1|0.35|ENSG00000151067|chr12:2567751-2567751|G/A|missense_variant nc|ENSG00000151067|Q13936-2|CACNA1C nc|ENSG00000151067|Q13936-2|CACNA1C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.685546875 2 523.79936 1045.58417 NaN NaN NaN NaN NaN NaN NaN 57.918 1 54.667 54.167 55.167 -3.2517 0 0 0 2.8426 1 10758 10758 0.84494 0 1 45953 359 30564 30584 45225 45225 0.06319840402443333 TKKEKKEKKI 10 Unmodified _TKKEKKEKKI_ 0 0 0 REV__ENST00000303391.10_2_X:153289994-153290270:-|nuORF REV__ENST00000303391.10_2_X:153289994-153290270:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7577514648438 2 630.405912 1258.79727 NaN NaN NaN NaN NaN NaN NaN 100.87 1 100.87 100.37 101.37 0 0 0 0 2.8426 1 19789 19789 1.9064 1.8626 1 + 45954 20420 30565 30585 45226 45226 0.1782246945379029 TKKEKKEKKI 10 Unmodified _TKKEKKEKKI_ 0 0 0 REV__ENST00000303391.10_2_X:153289994-153290270:-|nuORF REV__ENST00000303391.10_2_X:153289994-153290270:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7720336914062 2 630.405912 1258.79727 NaN NaN NaN NaN NaN NaN NaN 105.17 1 100.95 100.45 101.45 -4.2188 0 0 0 2.8426 1 20692 20692 1.9064 1.8626 1 + 45955 20420 30565 30585 45227 45227 0.1782246945379029 TKKFFEWYLFR 11 Unmodified _TKKFFEWYLFR_ 0 0 0 REV__ENST00000287218.8_1_6:38120967-38121303:+|nuORF REV__ENST00000287218.8_1_6:38120967-38121303:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2689208984375 3 522.281883 1563.82382 NaN NaN NaN NaN NaN NaN NaN 128.48 1 123.86 123.36 124.36 -4.6292 0 0 0 0.22632 1 25331 25331 0.50596 0.50539 1 + 45956 20339 30566 30586 45228 45228 0.06446158345124786 TKKFFEWYLFR 11 Unmodified _TKKFFEWYLFR_ 0 0 0 REV__ENST00000287218.8_1_6:38120967-38121303:+|nuORF REV__ENST00000287218.8_1_6:38120967-38121303:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2734375 3 522.281883 1563.82382 NaN NaN NaN NaN NaN NaN NaN 94.952 1 90.761 90.261 91.261 -4.1911 0 0 0 0.22632 1 18120 18120 0.50596 0 1 + 45957 20339 30566 30586 45229 45229 0.06446158345124786 TKKGKKRLK 9 Unmodified _TKKGKKRLK_ 0 0 0 REV__CCDC178|p.Y665Mfs*4|2|0.25|ENSG00000166960|chr18:33215635-33215635|A/-|frameshift_variant REV__CCDC178|p.Y665Mfs*4|2|0.25|ENSG00000166960|chr18:33215635-33215635|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7705688476562 2 543.877125 1085.7397 NaN NaN NaN NaN NaN NaN NaN 17.96 1 16.688 16.188 17.188 -1.2722 0 0 0 0.23508 1 2672 2672 1.6526 0 1 + 45958 13292 30567 30587 45230 45230 0.20025672038877929 TKKKKKILA 9 Unmodified _TKKKKKILA_ 0 0 0 REV__ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant REV__ABL1|p.L651Wfs*43|1|0.26|ENSG00000097007|chr9:130884236-130884236|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 353.2536926269531 3 353.253376 1056.7383 NaN NaN NaN NaN NaN NaN NaN 7.6768 1 7.6768 7.1768 8.1768 0 0 0 0 0.23508 1 726 726 0 0 1 + 45959 12907 30568 30588 45231 45231 0.21220037950138249 TKKKKKILMR 10 Unmodified _TKKKKKILMR_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2379455566406 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 85.837 1 81.886 81.386 82.386 -3.9503 0 0 0 0.22588 1 16331 16331 0.69767 0.07084 1 45960 4161 30569 30589 45232 45232 0.2172741643516929 TKKKKKILMR 10 Unmodified _TKKKKKILMR_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2402038574219 3 425.288204 1272.84278 NaN NaN NaN NaN NaN NaN NaN 86.077 1 82.127 81.627 82.627 -3.9503 0 0 0 0.22588 1 16380 16380 0.62683 0 1 45961 4161 30569 30589 45233 45233 0.2172741643516929 TKKKKKRKRKL 11 Unmodified _TKKKKKRKRKL_ 0 0 0 ENST00000437916.2_1_2:45148822-45149500:-|nuORF ENST00000437916.2_1_2:45148822-45149500:-|nuORF ENST00000437916.2_1_2:45148822-45149500:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7882385253906 3 481.3437 1441.00927 NaN NaN NaN NaN NaN NaN NaN 150.93 1 145.69 145.19 146.19 -5.2365 0 0 0 0.23698 1 29251 29251 0.094841 0.094841 1 45962 9857 30570 30590 45234 45234 0.306406056552305 TKKKKKRKRKL 11 Unmodified _TKKKKKRKRKL_ 0 0 0 ENST00000437916.2_1_2:45148822-45149500:-|nuORF ENST00000437916.2_1_2:45148822-45149500:-|nuORF ENST00000437916.2_1_2:45148822-45149500:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7864074707031 3 481.3437 1441.00927 NaN NaN NaN NaN NaN NaN NaN 21.606 1 19.885 19.385 20.385 -1.7211 0 0 0 0.23698 1 3387 3387 0 0 1 45963 9857 30570 30590 45235 45235 0.306406056552305 TKKKKKTIVT 10 Unmodified _TKKKKKTIVT_ 0 0 0 ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39;ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39 ENST00000493829.5_1_2:85843459-85872221:+|nuORF ENST00000493829.5_1_2:85843459-85872221:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 587.8272094726562 2 587.897723 1173.78089 NaN NaN NaN NaN NaN NaN NaN 172.64 1 172.64 172.14 173.14 0 0 0 0 2.8426 1 35651 35651 0.043787 0 1 45964 5942 30571 30591 45236 45236 0.20095388287677451 TKKKKLKKK 9 Unmodified _TKKKKLKKK_ 0 0 0 REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 565.409423828125 2 565.410801 1128.80705 NaN NaN NaN NaN NaN NaN NaN 176.55 1 171.76 171.26 172.26 -4.7898 0 0 0 0.23508 1 36102 36102 0 0 1 + 45965 21027 30572 30592 45237 45237 0.24779702249816182 TKKKLHSN 8 Unmodified _TKKKLHSN_ 0 0 0 REV__ENST00000508798.5_1_4:99393116-99393209:-|nuORF REV__ENST00000508798.5_1_4:99393116-99393209:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.2015686035156 3 319.194298 954.561064 NaN NaN NaN NaN NaN NaN NaN 97.534 1 93.436 92.936 93.936 -4.0978 0 0 0 0.21486 1 19139 19139 1.4819 0 1 + 45966 22519 30573 30593 45238 45238 0.08196582399989438 TKKKQKPA 8 Unmodified _TKKKQKPA_ 0 0 0 REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3 REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16485595703125 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 121.01 1 121.01 120.51 121.51 0 0 0 0 0.2396 1 23852 23852 0.30703 0.30703 1 + 45967 17515 30574 30594 45239 45239 0.11986056922410171 TKKKQKPA 8 Unmodified _TKKKQKPA_ 0 0 0 REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3 REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16436767578125 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 143.44 1 138.54 138.04 139.04 -4.8982 0 0 0 0.2396 1 27685 27685 0.30703 0.30703 1 + 45968 17515 30574 30594 45240 45240 0.11986056922410171 TKKKSKKRKL 10 Unmodified _TKKKSKKRKL_ 0 0 0 ENSG00000125482|ENST00000334270|TTF1 ENSG00000125482|ENST00000334270|TTF1 ENSG00000125482|ENST00000334270|TTF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7694091796875 2 622.929889 1243.84522 NaN NaN NaN NaN NaN NaN NaN 178.35 1 173.56 173.06 174.06 -4.7898 0 0 0 2.8426 1 36488 36488 0 0 1 45969 3362 30575 30595 45241 45241 0.23305588164498658 TKKLSARGGY 10 Unmodified _TKKLSARGGY_ 0 0 0 ENST00000505132.1_1_4:114680392-114682224:-|nuORF ENST00000505132.1_1_4:114680392-114682224:-|nuORF ENST00000505132.1_1_4:114680392-114682224:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2620849609375 2 540.811648 1079.60874 -0.015386 -8.3209E-06 -3.8895 -0.0021035 -3.9049 -0.0021118 540.8081924251093 60.424 0.17302 60.424 60.314 60.487 0 6 4 2 0 0 0 0.90091 1 11570 11570 6.2058 1.8765 1 810130 45970 10668 30576 30596 45242 45242 0.07212236600184951 TKKLSDYVG 9 Unmodified _TKKLSDYVG_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298;ENST00000483315.1_1_21:33975401-33976611:-|nuORF ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.0401916503906 3 337.52208 1009.54441 -0.47852 -0.00016151 0.49822 0.00016816 0.019703 6.6503E-06 337.52225790020475 16.262 0.5855 16.262 15.922 16.507 0 27 16 2 0 0 0 0.88284 1 2542 2542 0.96228 0 1 499410 45971 5186 30577 30597 45243 45243 0.04002036723375113 TKKNLLVRV 9 Unmodified _TKKNLLVRV_ 0 0 0 REV__DCX|p.K308Nfs*10|1|0.59|ENSG00000077279|chrX:111401014-111401014|T/-|frameshift_variant REV__DCX|p.K308Nfs*10|1|0.59|ENSG00000077279|chrX:111401014-111401014|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55712890625 3 357.572998 1069.69716 -0.75735 -0.00027081 1.0879 0.00038899 0.33052 0.00011818 357.90758594718795 108.83 0.24276 104.45 104.26 104.5 -4.3776 8 6 2 0 0 0 0.81734 1 21446 21446 0.96228 0.0979 1 638940 + 45972 13651 30578 30598 45244 45244 0.16510276910639732 TKKSSKKKE 9 Unmodified _TKKSSKKKE_ 0 0 0 REV__CEP57L1|p.F288Lfs*3|1|0.37|ENSG00000183137|chr6:109159307-109159307|T/-|frameshift_variant REV__CEP57L1|p.F288Lfs*3|1|0.37|ENSG00000183137|chr6:109159307-109159307|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 532.5692749023438 2 532.327131 1062.63971 NaN NaN NaN NaN NaN NaN NaN 172.96 1 168.07 167.57 168.57 -4.8977 0 0 0 0.23508 1 34326 34326 3.5965 0 1 + 45973 13382 30579 30599 45245 45245 0.11089389914445746 TKKTKKGLKTK 11 Unmodified _TKKTKKGLKTK_ 0 0 0 HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3 HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.765380859375 2 630.921729 1259.82891 NaN NaN NaN NaN NaN NaN NaN 47.784 1 44.915 44.415 45.415 -2.869 0 0 0 0.22632 1 9035 9035 0 0 1 45974 3463 30580 30600 45246 45246 0.20938462207709563 TKKYNRTGR 9 Unmodified _TKKYNRTGR_ 0 0 0 REV__nc|ENSG00000205189|Q96DT7-2|ZBTB10 REV__nc|ENSG00000205189|Q96DT7-2|ZBTB10 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2138977050781 3 375.215873 1122.62579 NaN NaN NaN NaN NaN NaN NaN 176.85 1 176.85 176.35 177.35 0 0 0 0 0.19622 1 36637 36637 0.96228 0.65524 1 + 45975 19581 30581 30601 45247 45247 0.06938157205991047 TKLFDNHFG 9 Unmodified _TKLFDNHFG_ 0 0 0 MYH15|p.F777Lfs*12|1|0.26|ENSG00000144821|chr3:108454134-108454134|A/-|frameshift_variant;MYH15|p.T1279Ifs*7|1|0.04|ENSG00000144821|chr3:108421141-108421142|-/ATAA|frameshift_variant;MYH15|p.E1364Vfs*7|1|0.04|ENSG00000144821|chr3:108414346-108414347|-/GGAGTTA|frameshift_variant;ENSG00000144821|ENST00000693548|MYH15 MYH15|p.F777Lfs*12|1|0.26|ENSG00000144821|chr3:108454134-108454134|A/-|frameshift_variant MYH15|p.F777Lfs*12|1|0.26|ENSG00000144821|chr3:108454134-108454134|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.205078125 3 360.182058 1077.52434 -0.43733 -0.00015752 -1.2924 -0.00046548 -1.7297 -0.000623 360.18153156626624 17.519 0.44509 16.246 15.974 16.419 -1.2722 20 12 2 0 0 0 0.59129 1 2581 2581 0.073264 0.069883 1 577390 45976 4580 30582 30602 45248 45248 -0.011317142165808036 TKLFQLTE 8 Unmodified _TKLFQLTE_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2765808105469 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 119.5 1 114.98 114.48 115.48 -4.5221 0 0 0 0.20488 1 23563 23563 21.537 0 1 45977 3477 30583 30603 45249 45249 0.048469382116991255 TKLFQTIE 8 Unmodified _TKLFQTIE_ 0 0 0 REV__ENST00000332629.6_1_3:196293846-196293930:-|nuORF REV__ENST00000332629.6_1_3:196293846-196293930:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2751770019531 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 119.49 1 114.84 114.34 115.34 -4.645 0 0 0 0.20488 1 22934 22934 21.537 0 1 + 45978 20629 30584 30604 45250 45250 0.04846938211721863 TKLLILKLRY 10 Unmodified _TKLLILKLRY_ 0 0 0 ENST00000452380.6_1_10:17194042-17210877:-|nuORF;nc|ENSG00000107614|O14717-3|TRDMT1;nc|ENSG00000107614|O14717-2|TRDMT1;ENSG00000107614|ENST00000377799|TRDMT1 ENST00000452380.6_1_10:17194042-17210877:-|nuORF ENST00000452380.6_1_10:17194042-17210877:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7489013671875 2 630.923741 1259.83293 NaN NaN NaN NaN NaN NaN NaN 17.557 1 16.246 15.746 16.746 -1.3109 0 0 0 0.22588 1 2817 2817 0.45834 0 1 45979 2431 30585 30605 45251 45251 0.2134055170145075 TKLLILKLRY 10 Unmodified _TKLLILKLRY_ 0 0 0 ENST00000452380.6_1_10:17194042-17210877:-|nuORF;nc|ENSG00000107614|O14717-3|TRDMT1;nc|ENSG00000107614|O14717-2|TRDMT1;ENSG00000107614|ENST00000377799|TRDMT1 ENST00000452380.6_1_10:17194042-17210877:-|nuORF ENST00000452380.6_1_10:17194042-17210877:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7786254882812 2 630.923741 1259.83293 NaN NaN NaN NaN NaN NaN NaN 48.496 1 45.627 45.127 46.127 -2.869 0 0 0 0.22588 1 9173 9173 0.45834 0 1 45980 2431 30585 30605 45252 45252 0.2134055170145075 TKLLLLFL 8 Unmodified _TKLLLLFL_ 0 0 0 REV__ENST00000422843.7_1_5:156638304-156665140:+|nuORF REV__ENST00000422843.7_1_5:156638304-156665140:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2489318847656 2 480.828246 959.64194 0.52517 0.00025252 -0.28256 -0.00013586 0.24261 0.00011665 480.8280190774722 112.57 0.76321 108.3 107.98 108.74 -4.2725 46 21 3 0 0 0 8448 1 21739 21739 1.3295 0 1 2539000 + 45981 21527 30586 30606 45253 45253 0.16050470390166538 TKLLLLFL 8 Unmodified _TKLLLLFL_ 0 0 0 REV__ENST00000422843.7_1_5:156638304-156665140:+|nuORF REV__ENST00000422843.7_1_5:156638304-156665140:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23846435546875 2 480.828246 959.64194 0.0071018 3.4147E-06 -0.096696 -4.6494E-05 -0.089594 -4.3079E-05 480.82814705782954 93.449 0.59223 89.605 89.33 89.922 -3.844 24 16 2 0 0 0 0.89225 1 17899 17899 6.2058 0 1 1468600 + 45982 21527 30586 30606 45254 45254 0.16050470390166538 TKLTIIKY 8 Unmodified _TKLTIIKY_ 0 0 0 REV__BTBD3|p.E51K|1|0.27|ENSG00000132640|chr20:11918426-11918426|G/A|missense_variant REV__BTBD3|p.E51K|1|0.27|ENSG00000132640|chr20:11918426-11918426|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2646179199219 2 490.312961 978.611368 NaN NaN NaN NaN NaN NaN NaN 79.229 1 75.553 75.053 76.053 -3.676 0 0 0 0.21486 1 15094 15094 2.5775 0 1 + 45983 13217 30587 30607 45255 45255 0.1212069200513497 TKLTLWPWVL 10 Unmodified _TKLTLWPWVL_ 0 0 0 REV__ENST00000508532.5_1_3:130613078-130613580:+|nuORF REV__ENST00000508532.5_1_3:130613078-130613580:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 419.58477783203125 3 419.584903 1255.73288 NaN NaN NaN NaN NaN NaN NaN 86.429 1 82.702 82.202 83.202 -3.727 0 0 0 2.8426 1 16895 16895 10.151 10.087 1 + 45984 22513 30588 30608 45256 45256 0.11524314367648003 TKLWMFRP 8 Unmodified _TKLWMFRP_ 0 0 0 REV__nc|ENSG00000115896|Q15111-2|PLCL1 REV__nc|ENSG00000115896|Q15111-2|PLCL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2008361816406 3 360.200395 1077.57936 NaN NaN NaN NaN NaN NaN NaN 52.394 1 49.307 48.807 49.807 -3.0876 0 0 0 0.21486 1 9637 9637 5.7319 0.43497 1 + 45985 15454 30589 30609 45257 45257 0.043670010503319645 TKMCLYEEY 9 Unmodified _TKMCLYEEY_ 0 0 0 REV__nc|ENSG00000113580|P04150-16|NR3C1 REV__nc|ENSG00000113580|P04150-16|NR3C1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2575073242188 2 590.256668 1178.49878 NaN NaN NaN NaN NaN NaN NaN 95.387 1 91.506 91.006 92.006 -3.881 0 0 0 0.23508 1 18301 18301 4.3292 0 1 + 45986 15348 30590 30610 45258 45258 -0.08332692845533529 TKMDMDKNDF 10 Unmodified _TKMDMDKNDF_ 0 0 0 REV__ENSG00000182156|ENST00000328313|ENPP7 REV__ENSG00000182156|ENST00000328313|ENPP7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7692260742188 2 622.767931 1243.52131 NaN NaN NaN NaN NaN NaN NaN 45.893 1 43.052 42.552 43.552 -2.8409 0 0 0 2.8426 1 8656 8656 1.9064 1.8626 1 + 45987 18761 30591 30611 45259 45259 -0.09071093447914791 TKMPLLII 8 Unmodified _TKMPLLII_ 0 0 0 REV__ZC3H13|p.A1112Vfs*54|1|0.23|ENSG00000123200|chr13:45969209-45969209|G/-|frameshift_variant REV__ZC3H13|p.A1112Vfs*54|1|0.23|ENSG00000123200|chr13:45969209-45969209|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16455078125 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 142.55 1 137.9 137.4 138.4 -4.656 0 0 0 0.2396 1 28178 28178 0 0 1 + 45988 25555 30592 30612 45260 45260 0.1160225110435249 TKNVNKAKQ 9 Unmodified _TKNVNKAKQ_ 0 0 0 REV__nc|ENSG00000175455|Q49A88-4|CCDC14 REV__nc|ENSG00000175455|Q49A88-4|CCDC14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.2130432128906 3 344.204974 1029.59309 NaN NaN NaN NaN NaN NaN NaN 24.203 1 22.65 22.15 23.15 -1.5532 0 0 0 0.19623 1 4207 4207 0.073264 0 1 + 45989 13282 30593 30613 45261 45261 0.07947950083121214 TKNVRCSW 8 Unmodified _TKNVRCSW_ 0 0 0 REV__ENSG00000121377|ENST00000240687|TAS2R7 REV__ENSG00000121377|ENST00000240687|TAS2R7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 497.2652587890625 2 497.250369 992.486184 NaN NaN NaN NaN NaN NaN NaN 157.51 1 152.23 151.73 152.73 -5.2854 0 0 0 0.22681 1 30569 30569 3.5871 1.8448 1 + 45990 15655 30594 30614 45262 45262 -0.010359234029010622 TKPIRRSR 8 Unmodified _TKPIRRSR_ 0 0 0 REV__ENST00000564006.5_1_16:77225374-77227441:+|nuORF REV__ENST00000564006.5_1_16:77225374-77227441:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 507.3507385253906 2 507.319974 1012.6254 NaN NaN NaN NaN NaN NaN NaN 148.13 1 148.13 147.63 148.63 0 0 0 0 0.23664 1 29641 29641 3.2813 0 1 + 45991 20103 30595 30615 45263 45263 0.1195878227679259 TKQLVDEF 8 Unmodified _TKQLVDEF_ 0 0 0 nc|ENSG00000095321|P43155-3|CRAT;nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT;ENST00000464290.5_1_9:131865327-131873452:-|nuORF nc|ENSG00000095321|P43155-3|CRAT nc|ENSG00000095321|P43155-3|CRAT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26214599609375 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 79.177 1 75.666 75.166 76.166 -3.5102 0 0 0 0.21452 1 15463 15463 13.508 0 1 45992 1857 30596 30616 45264 45264 0.012100613149868877 TKQLVDEF 8 Unmodified _TKQLVDEF_ 0 0 0 nc|ENSG00000095321|P43155-3|CRAT;nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT;ENST00000464290.5_1_9:131865327-131873452:-|nuORF nc|ENSG00000095321|P43155-3|CRAT nc|ENSG00000095321|P43155-3|CRAT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2577819824219 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 79.371 1 75.695 75.195 76.195 -3.676 0 0 0 0.22684 1 15121 15121 6.1918 4.4496 1 45993 1857 30596 30616 45265 45265 0.012100613149868877 TKRHELIF 8 Unmodified _TKRHELIF_ 0 0 0 REV__nc|ENSG00000106701|Q9BXM9-2|FSD1L REV__nc|ENSG00000106701|Q9BXM9-2|FSD1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27880859375 2 522.303458 1042.59236 NaN NaN NaN NaN NaN NaN NaN 134.82 1 134.82 134.32 135.32 0 0 0 0 0.21486 1 26693 26693 7.9102 1.187 1 + 45994 15061 30597 30617 45266 45266 0.07277155434076121 TKRQKISH 8 Unmodified _TKRQKISH_ 0 0 0 USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-6|USP48;ENST00000464577.1_1_1:22013654-22030763:-|nuORF USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.19390869140625 3 333.201564 996.582862 NaN NaN NaN NaN NaN NaN NaN 34.339 1 32.021 31.521 32.521 -2.3175 0 0 0 0.21486 1 6302 6302 3.9444 0 1 45995 1792 30598 30618 45267 45267 0.08443387148565762 TKRQLLEQTLK 11 Unmodified _TKRQLLEQTLK_ 0 0 0 ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.2781066894531 3 453.276909 1356.8089 NaN NaN NaN NaN NaN NaN NaN 151.73 1 151.73 151.23 152.23 0 0 0 0 0.22632 1 30392 30392 1.4551 0 1 45996 3545 30599 30619 45268 45268 0.1447666647711685 TKRRLRKVF 9 Unmodified _TKRRLRKVF_ 0 0 0 REV__nc|ENSG00000196460|Q6ZV50|RFX8 REV__nc|ENSG00000196460|Q6ZV50|RFX8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2985229492188 2 602.393474 1202.77239 NaN NaN NaN NaN NaN NaN NaN 122.11 1 117.56 117.06 118.06 -4.5476 0 0 0 0.23508 1 24070 24070 2.3027 0.24298 1 + 45997 19249 30600 30620 45269 45269 0.1791187916171566 TKSASSFST 9 Unmodified _TKSASSFST_ 0 0 0 ENST00000373299.4_1_9:130438176-130438215:+|nuORF ENST00000373299.4_1_9:130438176-130438215:+|nuORF ENST00000373299.4_1_9:130438176-130438215:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2245178222656 2 458.224539 914.434526 -0.1941 -8.8942E-05 -0.63213 -0.00028966 -0.82623 -0.0003786 458.2241915209431 48.902 1.8648 46.03 44.873 46.738 -2.872 108 52 4 0 0 0 0.27986 1 9089 9089 32.786 2.5609 1 40719000 45998 9194 30601 30621 45270 45270 -0.026113886158100286 TKSASSFST 9 Unmodified _TKSASSFST_ 0 0 0 ENST00000373299.4_1_9:130438176-130438215:+|nuORF ENST00000373299.4_1_9:130438176-130438215:+|nuORF ENST00000373299.4_1_9:130438176-130438215:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2239685058594 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 48.219 1 45.269 44.769 45.769 -2.9499 0 0 0 0.21078 1 8822 8822 20.415 1.1575 1 45999 9194 30601 30621 45271 45271 -0.026113886158100286 TKSTKKSA 8 Unmodified _TKSTKKSA_ 0 0 0 REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1 REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 426.2545471191406 2 425.753267 849.491981 0.1047 4.4575E-05 -1.2749 -0.0005428 -1.1702 -0.00049823 425.75260116400983 137.38 0.63271 137.38 137.13 137.77 0 27 17 2 0 0 0 8448 1 27239 27239 0 0 1 4260200 + 46000 16914 30602 30622 45272 45272 0.06121498380412049 TKSTKKSA 8 Unmodified _TKSTKKSA_ 0 0 0 REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1 REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2351379394531 2 425.753267 849.491981 0.1047 4.4575E-05 -1.2749 -0.0005428 -1.1702 -0.00049823 425.75260116400983 137.38 0.63271 137.38 137.13 137.77 0 27 17 2 0 0 0 1.0282 1 27313 27313 0 0 1 4260200 + 46001 16914 30602 30622 45273 45273 0.06121498380412049 TKSYACNGI 9 Unmodified _TKSYACNGI_ 0 0 0 REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.729736328125 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 152.99 1 152.99 152.49 153.49 0 0 0 0 0.19679 1 30649 30649 1.2148 0.588 1 + 46002 16404 30603 30623 45274 45274 -0.036187382509979216 TKTGDNRK 8 Unmodified _TKTGDNRK_ 0 0 0 ACTL7A|p.A107T|1|0.34|ENSG00000187003|chr9:108862641-108862641|G/A|missense_variant ACTL7A|p.A107T|1|0.34|ENSG00000187003|chr9:108862641-108862641|G/A|missense_variant ACTL7A|p.A107T|1|0.34|ENSG00000187003|chr9:108862641-108862641|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2491149902344 2 460.251423 918.488293 NaN NaN NaN NaN NaN NaN NaN 29.87 1 27.753 27.253 28.253 -2.1167 0 0 0 0.21486 1 5378 5378 9.3831 0.78985 1 46003 43 30604 30624 45275 45275 0.025788286065676402 TKTILEIGNY 10 Unmodified _TKTILEIGNY_ 0 0 0 tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1 tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1 tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3169555664062 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 48.739 1 48.739 48.239 49.239 0 0 0 0 0.22588 1 9206 9206 6.2058 0.47393 1 46004 26015 30605 30625 45276 45276 0.05410263957674033 TKTTKTKV 8 Unmodified _TKTTKTKV_ 0 0 0 REV__ENST00000396020.7_1_14:50043976-50044102:-|nuORF REV__ENST00000396020.7_1_14:50043976-50044102:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.76470947265625 2 453.784567 905.554582 0.41823 0.00018979 -1.1907 -0.00054033 -0.77248 -0.00035054 453.78397508139204 117.26 0.6759 112.9 112.58 113.26 -4.3585 28 18 2 0 0 0 0.89848 1 22547 22547 0.12286 0 1 1625500 + 46005 21273 30606 30626 45277 45277 0.09802644448609499 TKVDGLHPGSI 11 Unmodified _TKVDGLHPGSI_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2084045410156 3 375.208384 1122.60332 -0.22221 -8.3375E-05 1.4676 0.00055065 1.2454 0.00046727 375.2087235625191 17.934 0.35835 17.934 17.803 18.161 0 21 9 3 0 0 0 0.66124 1 2884 2884 0.00056442 0 1 3995800 + 46006 19707 30607 30627 45278 45278 0.04692513017721467 TKVGPYESV 9 Unmodified _TKVGPYESV_ 0 0 0 REV__nc|ENSG00000175344|P36544-2|CHRNA7 REV__nc|ENSG00000175344|P36544-2|CHRNA7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25653076171875 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 79.236 1 75.726 75.226 76.226 -3.5102 0 0 0 0.21844 1 15477 15477 18.146 1.2041 1 + 46007 18473 30608 30628 45279 45279 0.012100613149982564 TKVLHMSL 8 Unmodified _TKVLHMSL_ 0 0 0 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1;nc|ENSG00000002822|Q9Y6D9-4|MAD1L1;ENSG00000002822|ENST00000265854|MAD1L1 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1 nc|ENSG00000002822|Q9Y6D9-3|MAD1L1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650390625 3 310.181001 927.521173 NaN NaN NaN NaN NaN NaN NaN 133.92 1 129.1 128.6 129.6 -4.8175 0 0 0 0.21486 1 25778 25778 1.6526 0 1 46008 964 30609 30629 45280 45280 0.05451319405051436 TKVVLLHL 8 Unmodified _TKVVLLHL_ 0 0 0 REV__ENST00000452211.5_2_3:48341958-48342785:-|nuORF REV__ENST00000452211.5_2_3:48341958-48342785:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5277099609375 2 461.807845 921.601138 NaN NaN NaN NaN NaN NaN NaN 123.16 1 118.43 117.93 118.93 -4.731 0 0 0 0.21486 1 23658 23658 2.8892 0.31174 1 + 46009 21816 30610 30630 45281 45281 0.13720129070577514 TKWILLTA 8 Unmodified _TKWILLTA_ 0 0 0 REV__ENST00000423427.1_2_3:173322113-173322197:+|nuORF REV__ENST00000423427.1_2_3:173322113-173322197:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 473.7167053222656 2 473.292028 944.569503 NaN NaN NaN NaN NaN NaN NaN 68.099 1 64.99 64.49 65.49 -3.1086 0 0 0 0.23025 1 13220 13220 0.68139 0 1 + 46010 21534 30611 30631 45282 45282 0.09500136316603403 TKWRWCRRNMQ 11 Unmodified _TKWRWCRRNMQ_ 0 0 0 REV__OTOF|p.N184Tfs*29|1|0.39|ENSG00000115155|chr2:26503804-26503804|T/-|frameshift_variant REV__OTOF|p.N184Tfs*29|1|0.39|ENSG00000115155|chr2:26503804-26503804|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2618408203125 3 522.262723 1563.76634 NaN NaN NaN NaN NaN NaN NaN 131.04 1 126.41 125.91 126.91 -4.6359 0 0 0 0.22632 1 25826 25826 0.172 0 1 + 46011 24418 30612 30632 45283 45283 0.007006695962218146 TKYHSDEY 8 Unmodified _TKYHSDEY_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2630615234375 2 521.727446 1041.44034 -0.57491 -0.00029994 -1.1486 -0.00059926 -1.7235 -0.0008992 521.7265551525144 97.192 0.58298 92.957 92.573 93.156 -4.2348 34 16 3 0 0 0 0.73936 1 18515 18515 8.5933 0 1 1869900 46012 7288 30613 30633 45284 45284 -0.07872290104137392 TKYLINRED 9 Unmodified _TKYLINRED_ 0 0 0 REV__tr|U7SZE5|U7SZE5_FUSNU4-diphosphocytidyl-2-C-methyl-D-erythritolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispEPE=3SV=1 REV__tr|U7SZE5|U7SZE5_FUSNU4-diphosphocytidyl-2-C-methyl-D-erythritolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispEPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3356323242188 2 576.306395 1150.59824 NaN NaN NaN NaN NaN NaN NaN 48.51 1 48.51 48.01 49.01 0 0 0 0 0.23508 1 9163 9163 7.2892 2.96 1 + 46013 25244 30614 30634 45285 45285 0.028962091551193225 TKYRDSLP 8 Unmodified _TKYRDSLP_ 0 0 0 ENST00000607532.5_1_6:13307806-13327130:-|nuORF;nc|ENSG00000145979|Q9P0N9-3|TBC1D7;nc|ENSG00000145979|Q9P0N9-2|TBC1D7;ENSG00000145979|ENST00000379300|TBC1D7 ENST00000607532.5_1_6:13307806-13327130:-|nuORF ENST00000607532.5_1_6:13307806-13327130:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26251220703125 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 15.992 1 15.992 15.492 16.492 0 0 0 0 0.21486 1 2467 2467 10.824 0 1 46014 4632 30615 30635 45286 45286 0.023328834091330464 TLAALHER 8 Unmodified _TLAALHER_ 0 0 0 REV__MIXL1|p.R118H|1|0.46|ENSG00000185155|chr1:226224034-226224034|G/A|missense_variant REV__MIXL1|p.R118H|1|0.46|ENSG00000185155|chr1:226224034-226224034|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.0396423339844 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 43.926 1 41.179 40.679 41.679 -2.7475 0 0 0 0.21486 1 7945 7945 3.5965 0 1 + 46015 23858 30616 30636 45287 45287 0.044843204745689036 TLAASLLLAG 10 Unmodified _TLAASLLLAG_ 0 0 0 nc|ENSG00000197891|Q96S37-2|SLC22A12;nc|ENSG00000197891|Q96S37-4|SLC22A12;ENSG00000197891|ENST00000377574|SLC22A12;nc|ENSG00000197891|Q96S37-3|SLC22A12 nc|ENSG00000197891|Q96S37-2|SLC22A12 nc|ENSG00000197891|Q96S37-2|SLC22A12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 466.79144287109375 2 465.286943 928.559333 0.13576 6.3168E-05 0.0040645 1.8912E-06 0.13983 6.5059E-05 465.2868437709534 162.53 0.76349 162.53 162.1 162.86 0 64 21 4 0 0 0 0.23583 1 32646 32646 19.946 0 1 131510000 46016 12545 30617 30637 45288 45288 0.092195285913931 TLAEIAKVEL 10 Unmodified _TLAEIAKVEL_ 0 0 0 NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7844848632812 2 543.823889 1085.63323 0.33716 0.00018336 -0.32049 -0.00017429 0.016668 9.0646E-06 543.8236360879073 141.84 0.94165 141.84 141.57 142.51 0 53 26 3 0 0 0 0.0038844 5 28275 28219;28237;28275;28295;28348 76.471 65.03 1 11261000 46017 4686 30618 30638 45289;45290;45291;45292;45293 45291 0.09383451963026346 TLAEIAKVEL 10 Unmodified _TLAEIAKVEL_ 0 0 0 NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7791748046875 2 543.823889 1085.63323 0.30093 0.00016365 -0.087637 -4.7659E-05 0.21329 0.00011599 543.8237773835752 146.15 0.89891 141.46 141.02 141.92 -4.6868 62 25 3 0 0 0 1.3445E-16 6 28964 28959;28964;28969;29022;29039;29043 165.58 88.76 1 14620000 46018 4686 30618 30638 45294;45295;45296;45297;45298;45299 45295 0.09383451963026346 TLAEIAKVEL 10 Unmodified _TLAEIAKVEL_ 0 0 0 NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7880859375 2 543.823889 1085.63323 0.13146 7.149E-05 -0.12506 -6.8012E-05 0.0063953 3.4779E-06 543.823796187576 146.74 0.79257 141.63 141.28 142.07 -5.1108 39 22 2 0 0 0 0.0056447 3 28373 28366;28373;28426 63.167 54.27 1 10571000 46019 4686 30618 30638 45300;45301;45302 45301 0.09383451963026346 TLAEIAKVEL 10 Unmodified _TLAEIAKVEL_ 0 0 0 NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7950439453125 2 543.823889 1085.63323 0.40525 0.00022038 -0.4645 -0.0002526 -0.059248 -3.2221E-05 543.8238001229732 146.67 1.0883 141.67 140.98 142.07 -5 63 30 3 0 0 0 7.755E-05 3 28371 28371;28394;28430 132.22 72.851 1 10282000 46020 4686 30618 30638 45303;45304;45305 45303 0.09383451963026346 TLAESSCPDY 10 Unmodified _TLAESSCPDY_ 0 0 0 ENSG00000172927|ENST00000441339|MYEOV ENSG00000172927|ENST00000441339|MYEOV ENSG00000172927|ENST00000441339|MYEOV MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.2355346679688 2 543.226422 1084.43829 0.12941 7.0297E-05 1.971 0.0010707 2.1004 0.001141 543.2281769282686 146.54 0.1682 141.43 141.34 141.51 -5.1108 5 4 2 0 0 0 0.664 1 28355 28355 14.838 3.198 1 916830 46021 6252 30619 30639 45306 45306 -0.10055086904253585 TLAESSCPDY 10 Unmodified _TLAESSCPDY_ 0 0 0 ENSG00000172927|ENST00000441339|MYEOV ENSG00000172927|ENST00000441339|MYEOV ENSG00000172927|ENST00000441339|MYEOV MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.226422 1084.43829 0.4082 0.00022175 -1.1433 -0.00062105 -0.73507 -0.00039931 543.7259280397825 146.74 0.10928 141.74 141.67 141.78 -5 0.1538 -0.0028354 NaN 14.838 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1157100 46022 6252 30619 30639 -0.10055086904253585 TLAHERDDLY 10 Unmodified _TLAHERDDLY_ 0 0 0 REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.10748291015625 3 411.535048 1231.58332 0.23955 9.8583E-05 -0.21981 -9.046E-05 0.019738 8.1229E-06 411.534937379251 49.904 0.78821 49.904 49.512 50.3 0 60 21 4 0 0 0 0.91149 1 9490 9490 6.1918 2.3155 1 8411200 + 46023 18825 30620 30640 45307 45307 -0.023212827129100333 TLAHERDDLY 10 Unmodified _TLAHERDDLY_ 0 0 0 REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.1142272949219 3 411.535048 1231.58332 -0.45823 -0.00018858 0.56719 0.00023342 0.10896 4.4843E-05 411.5352586742771 53.178 0.88972 50.083 49.724 50.614 -3.0954 73 25 4 0 0 0 0.91149 1 9844 9844 6.6304 0.43853 1 14822000 + 46024 18825 30620 30640 45308 45308 -0.023212827129100333 TLAHERDDLY 10 Unmodified _TLAHERDDLY_ 0 0 0 REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 411.535048 1231.58332 -0.38081 -0.00015672 0.3646 0.00015004 -0.016218 -6.6742E-06 411.53518592027734 52.984 0.69763 50.1 49.756 50.453 -2.8837 0.043648 0.00019453 NaN 6.1918 63 19 5 NaN NaN NaN NaN 0 NaN NaN 0 18261000 + 46025 18825 30620 30640 -0.023212827129100333 TLAHERDDLY 10 Unmodified _TLAHERDDLY_ 0 0 0 REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 411.535048 1231.58332 0.030469 1.2539E-05 0.021356 8.7887E-06 0.051824 2.1328E-05 411.5350401044307 53.228 0.81207 50.14 49.761 50.573 -3.0876 0.083119 -0.00022923 NaN 6.1918 76 22 5 NaN NaN NaN NaN 0 NaN NaN 0 16242000 + 46026 18825 30620 30640 -0.023212827129100333 TLAHIHYGV 9 Unmodified _TLAHIHYGV_ 0 0 0 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.1961669921875 3 337.518781 1009.53451 -0.71762 -0.00024221 1.0791 0.00036422 0.36147 0.000122 337.51899964242415 65.668 0.24284 65.668 65.552 65.794 0 9 6 2 0 0 0 0.45972 1 12676 12676 8.1555 3.2585 1 1591500 46027 4137 30621 30641 45309 45309 0.030128935086622732 TLAHIHYGV 9 Unmodified _TLAHIHYGV_ 0 0 0 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 337.518781 1009.53451 -0.34294 -0.00011575 0.51218 0.00017287 0.16924 5.7122E-05 337.51882343800537 68.58 0.45244 65.401 65.241 65.694 -3.1796 -0.1182 0.00013035 NaN 8.1555 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1882000 46028 4137 30621 30641 0.030128935086622732 TLAHIHYGV 9 Unmodified _TLAHIHYGV_ 0 0 0 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 337.518781 1009.53451 0.35267 0.00011903 -0.044839 -1.5134E-05 0.30783 0.0001039 337.5186592799233 69.066 0.43663 65.529 65.326 65.763 -3.5362 0.010591 -0.00043366 NaN 8.1555 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 903180 46029 4137 30621 30641 0.030128935086622732 TLAHIHYGV 9 Unmodified _TLAHIHYGV_ 0 0 0 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 337.518781 1009.53451 -0.35169 -0.0001187 0.31247 0.00010547 -0.039214 -1.3235E-05 337.51883685731315 68.868 0.453 65.478 65.319 65.772 -3.3903 -0.041155 -7.1864E-05 NaN 8.1555 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1090700 46030 4137 30621 30641 0.030128935086622732 TLAHVSPRY 9 Unmodified _TLAHVSPRY_ 0 0 0 REV__DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant REV__DMBX1|p.G247Vfs*15|1|0.17|ENSG00000197587|chr1:46512081-46512081|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.266845703125 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 123.55 1 123.55 123.05 124.05 0 0 0 0 0.19162 1 24355 24355 1.2148 0.80657 1 + 46031 13699 30622 30642 45310 45310 0.03640278537386621 TLAKYLMEL 9 Unmodified _TLAKYLMEL_ 0 0 0 ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2 ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2 ENSG00000134057|ENST00000256442|CCNB1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2591552734375 2 541.301736 1080.58892 NaN NaN NaN NaN NaN NaN NaN 167.07 1 162.18 161.68 162.68 -4.8916 0 0 0 0.080616 1 32806 32806 41.956 7.0235 1 46032 3824;5127 30623 30643 45311 45311 0.05184724545210884 TLAPLLTVAL 10 Unmodified _TLAPLLTVAL_ 0 0 0 REV__ENST00000487676.1_1_6:32627706-32627964:-|nuORF REV__ENST00000487676.1_1_6:32627706-32627964:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 506.3273010253906 2 506.326068 1010.63758 NaN NaN NaN NaN NaN NaN NaN 169.31 1 164.52 164.02 165.02 -4.7898 0 0 0 2.8426 1 34292 34292 19.362 4.9566 1 + 46033 22261 30624 30644 45312 45312 0.13268961176606808 TLAPSVPSLPL 11 Unmodified _TLAPSVPSLPL_ 0 0 0 REV__ILDR2|p.N157Mfs*117|1|0.23|ENSG00000143195|chr1:166956762-166956762|T/-|frameshift_variant REV__ILDR2|p.N157Mfs*117|1|0.23|ENSG00000143195|chr1:166956762-166956762|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7786254882812 2 547.826432 1093.63831 NaN NaN NaN NaN NaN NaN NaN 152.63 1 152.63 152.13 153.13 0 0 0 0 0.22683 1 30575 30575 10.8 2.0541 1 + 46034 23657 30625 30645 45313 45313 0.0952375582564855 TLAQQPTAV 9 Unmodified _TLAQQPTAV_ 0 0 0 nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC nc|ENSG00000066136|Q13952-3|NFYC nc|ENSG00000066136|Q13952-3|NFYC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2428283691406 2 464.758549 927.502546 0.23409 0.00010879 -0.59495 -0.00027651 -0.36087 -0.00016772 464.75843985317556 51.772 0.74365 51.772 51.507 52.251 0 38 20 2 0 0 0 0.037522 4 9844 9805;9844;9865;9905 76.825 12.914 1 7708300 46035 12227 30626 30646 45314;45315;45316;45317 45315 0.03589481034839537 TLAQQPTAV 9 Unmodified _TLAQQPTAV_ 0 0 0 nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC nc|ENSG00000066136|Q13952-3|NFYC nc|ENSG00000066136|Q13952-3|NFYC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2406921386719 2 464.758549 927.502546 -0.27586 -0.00012821 0.60957 0.0002833 0.33371 0.00015509 464.7587651087695 54.829 0.75128 51.945 51.601 52.352 -2.8837 35 21 2 0 0 0 0.10573 3 10451 10435;10451;10539 53.833 10.183 1 16164000 46036 12227 30626 30646 45318;45319;45320 45319 0.03589481034839537 TLAQQPTAV 9 Unmodified _TLAQQPTAV_ 0 0 0 nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC nc|ENSG00000066136|Q13952-3|NFYC nc|ENSG00000066136|Q13952-3|NFYC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2365417480469 2 464.758549 927.502546 0.022271 1.0351E-05 0.21002 9.7611E-05 0.2323 0.00010796 464.7585984395865 55.218 0.69619 52.083 51.713 52.409 -3.1352 47 19 3 0 0 0 0.037522 3 10197 10153;10197;10268 76.825 15.223 1 10487000 46037 12227 30626 30646 45321;45322;45323 45322 0.03589481034839537 TLAQQPTAV 9 Unmodified _TLAQQPTAV_ 0 0 0 nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC nc|ENSG00000066136|Q13952-3|NFYC nc|ENSG00000066136|Q13952-3|NFYC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2366027832031 2 464.758549 927.502546 -0.017564 -8.163E-06 0.075261 3.4978E-05 0.057697 2.6815E-05 464.7585903213304 55.312 0.79194 52.174 51.729 52.521 -3.1377 50 22 3 0 0 0 0.065291 1 10253 10253 72.968 15.246 1 12518000 46038 12227 30626 30646 45324 45324 0.03589481034839537 TLAQRVKEV 9 Unmodified _TLAQRVKEV_ 0 0 0 ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000462297.1_1_2:74754523-74754670:-|nuORF ENST00000486234.1_1_2:74754275-74754965:-|nuORF ENST00000486234.1_1_2:74754275-74754965:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279296875 2 522.314023 1042.61349 0.26512 0.00013848 -0.30755 -0.00016064 -0.042427 -2.216E-05 522.3138076205579 37.155 0.48048 37.155 36.957 37.438 0 43 13 4 0 0 0 0.14687 1 6866 6866 64.927 26.312 1 23143000 46039 2845 30627 30647 45325 45325 0.0938912074293512 TLAQRVKEV 9 Unmodified _TLAQRVKEV_ 0 0 0 ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000462297.1_1_2:74754523-74754670:-|nuORF ENST00000486234.1_1_2:74754275-74754965:-|nuORF ENST00000486234.1_1_2:74754275-74754965:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2777099609375 2 522.314023 1042.61349 -0.48575 -0.00025372 0.46695 0.0002439 -0.018797 -9.818E-06 522.3142301819969 39.708 0.52451 37.159 36.93 37.454 -2.5491 47 14 4 0 0 0 0.10383 1 7374 7374 77.049 31.309 1 21124000 46040 2845 30627 30647 45326 45326 0.0938912074293512 TLAQRVKEV 9 Unmodified _TLAQRVKEV_ 0 0 0 ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000462297.1_1_2:74754523-74754670:-|nuORF ENST00000486234.1_1_2:74754275-74754965:-|nuORF ENST00000486234.1_1_2:74754275-74754965:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.277587890625 2 522.314023 1042.61349 -0.68274 -0.00035661 0.7275 0.00037998 0.044752 2.3374E-05 522.3143789064578 39.639 0.53098 37.176 36.94 37.471 -2.4629 44 14 4 0 0 0 0.14687 1 7118 7118 64.927 17.178 1 17312000 46041 2845 30627 30647 45327 45327 0.0938912074293512 TLAQRVKEV 9 Unmodified _TLAQRVKEV_ 0 0 0 ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000462297.1_1_2:74754523-74754670:-|nuORF ENST00000486234.1_1_2:74754275-74754965:-|nuORF ENST00000486234.1_1_2:74754275-74754965:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2774658203125 2 522.314023 1042.61349 0.18451 9.6372E-05 -0.20156 -0.00010528 -0.017053 -8.907E-06 522.3138988248638 39.563 0.56382 37.158 36.925 37.489 -2.4049 50 15 4 0 0 0 0.070861 1 7061 7061 68.76 30.145 1 17075000 46042 2845 30627 30647 45328 45328 0.0938912074293512 TLARAKLI 8 Unmodified _TLARAKLI_ 0 0 0 REV__nc|ENSG00000165533|Q8TAM2-6|TTC8 REV__nc|ENSG00000165533|Q8TAM2-6|TTC8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 443.2294616699219 2 443.297645 884.580737 -0.087475 -3.8778E-05 0.1223 5.4214E-05 0.034822 1.5437E-05 443.29762987534815 79.593 1.5882 76.082 74.955 76.543 -3.5102 74 44 3 0 0 0 0.60698 1 15547 15547 4.2837 0 1 5883400 + 46043 17780 30628 30648 45329 45329 0.13382958410738865 TLATVGTG 8 Unmodified _TLATVGTG_ 0 0 0 ENSG00000183943|ENST00000262848|PRKX ENSG00000183943|ENST00000262848|PRKX ENSG00000183943|ENST00000262848|PRKX MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.1921081542969 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 90.094 1 90.094 89.594 90.594 0 0 0 0 0.21486 1 17600 17600 2.5775 0 1 46044 6880 30629 30649 45330 45330 0.01566162534970772 TLCFMEGE 8 Unmodified _TLCFMEGE_ 0 0 0 REV__ENST00000514667.1_1_5:130940379-131080327:-|nuORF REV__ENST00000514667.1_1_5:130940379-131080327:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2484130859375 2 465.190796 928.36704 NaN NaN NaN NaN NaN NaN NaN 161.77 1 161.77 161.27 162.27 0 0 0 0 0.2343 1 32493 32493 0.12286 0 1 + 46045 20458 30630 30650 45331 45331 -0.10000878142614056 TLDAAISKV 9 Unmodified _TLDAAISKV_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.233642578125 2 459.26875 916.522947 0.66743 0.00030653 0.39367 0.0001808 1.0611 0.00048733 459.2686190367868 79.082 1.5663 79.082 78.191 79.758 0 74 44 3 0 0 0 0.35556 1 15280 15280 12.241 4.0851 1 4193700 46046 3477 30631 30651 45332 45332 0.06134651694674176 TLDAGPWR 8 Unmodified _TLDAGPWR_ 0 0 0 REV__ENST00000354910.9_1_3:134201735-134204815:-|nuORF REV__ENST00000354910.9_1_3:134201735-134204815:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2381286621094 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 105.72 1 105.72 105.22 106.22 0 0 0 0 0.21486 1 20778 20778 8.5933 0 1 + 46047 20784 30632 30652 45333 45333 0.0003634506618936939 TLDALNIN 8 Unmodified _TLDALNIN_ 0 0 0 REV__ENSG00000109111|ENST00000314616|SUPT6H REV__ENSG00000109111|ENST00000314616|SUPT6H MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22991943359375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 61.853 1 61.853 61.353 62.353 0 0 0 0 0.2343 1 11864 11864 0.0082765 0 1 + 46048 15153 30633 30653 45334 45334 0.019015056264606756 TLDAWIGP 8 Unmodified _TLDAWIGP_ 0 0 0 ENSG00000110108|ENST00000227525|TMEM109 ENSG00000110108|ENST00000227525|TMEM109 ENSG00000110108|ENST00000227525|TMEM109 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2302551269531 2 436.729261 871.443968 -0.38795 -0.00016943 -0.59558 -0.00026011 -0.98353 -0.00042954 436.72901988124397 40.185 0.91867 37.55 36.81 37.729 -2.6348 34 25 2 0 0 0 0.18731 1 7487 7487 46.921 2.5139 1 1008800 46049 2566 30634 30654 45335 45335 0.00310424460383274 TLDDESLKY 9 Unmodified _TLDDESLKY_ 0 0 0 nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2 nc|ENSG00000148426|Q86WR7-2|PROSER2 nc|ENSG00000148426|Q86WR7-2|PROSER2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7951049804688 2 542.263862 1082.51317 0.31914 0.00017306 -1.1736 -0.00063642 -0.8545 -0.00046337 542.263153548617 72.938 1.2583 72.938 72.404 73.663 0 117 35 4 0 0 0 0.34411 1 14146 14146 29.082 9.8246 1 73695000 46050 4745 30635 30655 45336 45336 -0.02478581101377131 TLDDESLKY 9 Unmodified _TLDDESLKY_ 0 0 0 nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2 nc|ENSG00000148426|Q86WR7-2|PROSER2 nc|ENSG00000148426|Q86WR7-2|PROSER2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7864379882812 2 542.263862 1082.51317 0.091099 4.94E-05 -0.50678 -0.00027481 -0.41568 -0.00022541 542.2635070733113 76.836 1.2518 73.07 72.678 73.93 -3.7664 124 35 5 0 0 0 0.5059 1 14593 14593 19.257 0 1 109510000 46051 4745 30635 30655 45337 45337 -0.02478581101377131 TLDDESLKY 9 Unmodified _TLDDESLKY_ 0 0 0 nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2 nc|ENSG00000148426|Q86WR7-2|PROSER2 nc|ENSG00000148426|Q86WR7-2|PROSER2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7814331054688 2 542.263862 1082.51317 0.23497 0.00012741 -0.8382 -0.00045453 -0.60323 -0.00032711 542.2633423924988 76.7 1.2627 73.067 72.681 73.944 -3.6337 122 35 5 0 0 0 0.10537 3 14595 14567;14595;14674 43.982 39.323 1 118610000 46052 4745 30635 30655 45338;45339;45340 45339 -0.02478581101377131 TLDDKKVYL 9 Unmodified _TLDDKKVYL_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7775268554688 2 547.808239 1093.60193 -0.00028135 -1.5413E-07 0.28327 0.00015518 0.28299 0.00015502 547.8083662800778 66.788 0.84827 66.788 66.379 67.227 0 66 23 4 0 0 0 0.02936 1 12887 12887 107.1 55.47 1 25274000 46053 3370 30636 30656 45341 45341 0.058868789289590495 TLDDKKVYL 9 Unmodified _TLDDKKVYL_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7897338867188 2 547.808239 1093.60193 0.09382 5.1395E-05 0.10021 5.4894E-05 0.19403 0.00010629 547.808233239882 69.81 0.7778 66.631 66.223 67 -3.1796 63 21 4 0 0 0 0.057483 1 13542 13542 87.258 62.267 1 17227000 46054 3370 30636 30656 45342 45342 0.058868789289590495 TLDDKKVYL 9 Unmodified _TLDDKKVYL_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7779541015625 2 547.808239 1093.60193 0.40762 0.0002233 -0.16526 -9.0532E-05 0.24236 0.00013277 547.8080723471152 70.223 0.77564 66.643 66.242 67.018 -3.5798 62 21 4 0 0 0 0.033674 1 13202 13202 69.338 25.566 1 17026000 46055 3370 30636 30656 45343 45343 0.058868789289590495 TLDDKKVYL 9 Unmodified _TLDDKKVYL_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7774658203125 2 547.808239 1093.60193 0.4198 0.00022997 -0.23842 -0.00013061 0.18138 9.9363E-05 547.8080764941163 70.091 0.94906 66.624 66.182 67.131 -3.467 66 26 3 0 0 0 0.02642 1 13263 13263 96.936 51.236 1 15144000 46056 3370 30636 30656 45344 45344 0.058868789289590495 TLDDTLRPL 9 Unmodified _TLDDTLRPL_ 0 0 0 tr|U7T4A5|U7T4A5_FUSNUBenzoyl-CoAreductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00400PE=3SV=1 tr|U7T4A5|U7T4A5_FUSNUBenzoyl-CoAreductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00400PE=3SV=1 tr|U7T4A5|U7T4A5_FUSNUBenzoyl-CoAreductase,subunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00400PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2819213867188 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 105.54 1 105.54 105.04 106.04 0 0 0 0 0.22251 1 20742 20742 16.942 0 1 46057 26430 30637 30657 45345 45345 0.04629421752088092 TLDEATPTL 9 Unmodified _TLDEATPTL_ 0 0 0 nc|ENSG00000100324|Q15750-2|TAB1;ENSG00000100324|ENST00000216160|TAB1 nc|ENSG00000100324|Q15750-2|TAB1 nc|ENSG00000100324|Q15750-2|TAB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.240234375 2 480.747847 959.481142 -0.060564 -2.9116E-05 0.034517 1.6594E-05 -0.026047 -1.2522E-05 480.74791441461934 95.564 0.62537 91.683 91.331 91.956 -3.881 24 17 2 0 0 0 0.31728 1 18356 18356 10.899 9.2071 1 1302500 46058 1953 30638 30658 45346 45346 -0.00021948784524283838 TLDEKGLVVI 10 Unmodified _TLDEKGLVVI_ 0 0 0 REV__ENST00000498190.1_1_7:95216954-95218999:-|nuORF REV__ENST00000498190.1_1_7:95216954-95218999:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7916870117188 2 543.823889 1085.63323 NaN NaN NaN NaN NaN NaN NaN 63.804 1 60.547 60.047 61.047 -3.2567 0 0 0 0.22588 1 11972 11972 8.1555 1.8014 1 + 46059 13839 30639 30659 45347 45347 0.09383451963049083 TLDELDTLFL 10 Unmodified _TLDELDTLFL_ 0 0 0 REV__ENST00000583834.5_1_17:72768345-72771837:-|nuORF REV__ENST00000583834.5_1_17:72768345-72771837:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2488403320312 2 590.310812 1178.60707 NaN NaN NaN NaN NaN NaN NaN 104.7 1 100.35 99.851 100.85 -4.346 0 0 0 0.22583 1 20060 20060 13.906 2.4113 1 + 46060 15148 30640 30660 45348 45348 0.02491138000891624 TLDEMYTG 8 Unmodified _TLDEMYTG_ 0 0 0 REV__ENSG00000189108|ENST00000372582|IL1RAPL2 REV__ENSG00000189108|ENST00000372582|IL1RAPL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2553405761719 2 465.199676 928.384799 -0.019611 -9.1229E-06 -0.038291 -1.7813E-05 -0.057901 -2.6936E-05 465.1995710945703 95.443 0.61969 91.393 91.134 91.754 -4.0496 29 17 2 0 0 0 0.69887 1 18778 18778 14.582 0 1 1338100 + 46061 19193 30641 30661 45349 45349 -0.08225839616125086 TLDEVTEEDE 10 Unmodified _TLDEVTEEDE_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2490844726562 2 590.248605 1178.48266 NaN NaN NaN NaN NaN NaN NaN 104.2 1 99.979 99.479 100.48 -4.2183 0 0 0 0.19577 1 20493 20493 29.082 9.8246 1 46062 1515 30642 30662 45350 45350 -0.09944404277075591 TLDEVTEEDE 10 Unmodified _TLDEVTEEDE_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2489624023438 2 590.248605 1178.48266 NaN NaN NaN NaN NaN NaN NaN 104.28 1 100.22 99.722 100.72 -4.0543 0 0 0 0.22552 1 20053 20053 18.146 1.0335 1 46063 1515 30642 30662 45351 45351 -0.09944404277075591 TLDGSLHAV 9 Unmodified _TLDGSLHAV_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23834228515625 2 456.742899 911.471246 0.34239 0.00015638 -0.17766 -8.1144E-05 0.16473 7.5238E-05 456.7427662852377 71.742 1.1831 68.203 67.731 68.914 -3.5385 77 33 4 0 0 0 0.40602 1 13615 13615 25.399 6.1423 1 28165000 46064 6585;11512 30643 30663 45352 45352 0.01196908000770236 TLDGSLHAV 9 Unmodified _TLDGSLHAV_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 456.742899 911.471246 -0.066457 -3.0354E-05 0.15813 7.2226E-05 0.091677 4.1873E-05 456.742949700385 68.271 0.89362 68.271 67.894 68.788 0 0.10546 -5.4455E-05 NaN 25.399 63 24 4 NaN NaN NaN NaN 0 NaN NaN 0 36512000 46065 6585;11512 30643 30663 0.01196908000770236 TLDGSLHAV 9 Unmodified _TLDGSLHAV_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 456.742899 911.471246 0.25975 0.00011864 0.96157 0.00043919 1.2213 0.00055783 456.74282836706215 71.715 0.95819 68.088 67.594 68.552 -3.6275 -0.077463 0.00067948 NaN 25.399 76 26 4 NaN NaN NaN NaN 0 NaN NaN 0 18883000 46066 6585;11512 30643 30663 0.01196908000770236 TLDHKCKI 8 Unmodified _TLDHKCKI_ 0 0 0 nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N725Mfs*11|1|0.12|ENSG00000152952|chr3:146070757-146070757|T/-|frameshift_variant;ENSG00000152952|ENST00000282903|PLOD2 nc|ENSG00000152952|O00469|PLOD2 nc|ENSG00000152952|O00469|PLOD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7218933105469 2 479.262945 956.511337 0.18626 8.9267E-05 0.23073 0.00011058 0.41699 0.00019985 479.2631688463516 99.283 0.59364 99.283 99.024 99.618 0 24 16 2 0 0 0 0.95284 1 19525 19525 9.3474 0 1 1684600 46067 4948 30644 30664 45353 45353 0.03134131399679063 TLDKYLADIE 10 Unmodified _TLDKYLADIE_ 0 0 0 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 394.3003845214844 3 394.20805 1179.60232 -0.41284 -0.00016274 0.17795 7.015E-05 -0.23488 -9.2593E-05 394.2080522651102 61.144 0.76585 57.905 57.51 58.276 -3.2395 60 21 3 0 0 0 0.91149 1 11497 11497 3.3196 0.58445 1 7450800 + 46068 16743 30645 30665 45354 45354 0.019702538581213958 TLDKYLADIE 10 Unmodified _TLDKYLADIE_ 0 0 0 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 394.20805 1179.60232 -0.33379 -0.00013158 0.31568 0.00012444 -0.018119 -7.1425E-06 394.20807227037807 58.01 0.73075 58.01 57.614 58.344 0 0.054805 0.00027914 NaN 3.3196 58 20 4 NaN NaN NaN NaN 0 NaN NaN 0 7200600 + 46069 16743 30645 30665 0.019702538581213958 TLDKYLADIE 10 Unmodified _TLDKYLADIE_ 0 0 0 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 394.20805 1179.60232 -0.19244 -7.5862E-05 0.026305 1.037E-05 -0.16614 -6.5492E-05 394.2079817224065 60.884 0.62405 57.951 57.609 58.233 -2.9333 -0.0044002 -6.3081E-05 NaN 3.3196 45 17 3 NaN NaN NaN NaN 0 NaN NaN 0 8168500 + 46070 16743 30645 30665 0.019702538581213958 TLDKYLADIE 10 Unmodified _TLDKYLADIE_ 0 0 0 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 REV__nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 394.20805 1179.60232 0.088639 3.4942E-05 -0.2129 -8.3929E-05 -0.12427 -4.8986E-05 394.207892757521 61.324 0.77491 57.955 57.513 58.288 -3.3694 3.8562E-05 -0.00034598 NaN 3.3196 57 21 4 NaN NaN NaN NaN 0 NaN NaN 0 6045900 + 46071 16743 30645 30665 0.019702538581213958 TLDLTRCYPP 10 Unmodified _TLDLTRCYPP_ 0 0 0 REV__KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant REV__KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2737426757812 2 589.797349 1177.58014 NaN NaN NaN NaN NaN NaN NaN 99.924 1 99.924 99.424 100.42 0 0 0 0 0.22518 1 19598 19598 22.736 2.2827 1 + 46072 16214 30646 30666 45355 45355 -0.0015424909124703845 TLDLTRCYPP 10 Unmodified _TLDLTRCYPP_ 0 0 0 REV__KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant REV__KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2479248046875 2 589.797349 1177.58014 NaN NaN NaN NaN NaN NaN NaN 100.03 1 100.03 99.535 100.53 0 0 0 0 0.22544 1 19622 19622 19.257 3.4098 1 + 46073 16214 30646 30666 45356 45356 -0.0015424909124703845 TLDMEDCGY 9 Unmodified _TLDMEDCGY_ 0 0 0 nc|ENSG00000186318|P56817-6|BACE1;nc|ENSG00000186318|P56817-5|BACE1;nc|ENSG00000186318|P56817-4|BACE1;nc|ENSG00000186318|P56817-3|BACE1;nc|ENSG00000186318|P56817-2|BACE1;ENSG00000186318|ENST00000313005|BACE1 nc|ENSG00000186318|P56817-6|BACE1 nc|ENSG00000186318|P56817-6|BACE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6832275390625 2 523.6939 1045.37325 NaN NaN NaN NaN NaN NaN NaN 160.72 1 155.47 154.97 155.97 -5.2526 0 0 0 0.23508 1 31189 31189 7.9102 0.62092 1 46074 7051 30647 30667 45357 45357 -0.14762404701764353 TLDNKLYI 8 Unmodified _TLDNKLYI_ 0 0 0 REV__tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1 REV__tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27655029296875 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 133.62 1 133.62 133.12 134.12 0 0 0 0 0.21039 1 26436 26436 16.942 0 1 + 46075 25388 30648 30668 45358 45358 0.04846938211687757 TLDQTLNEL 9 Unmodified _TLDQTLNEL_ 0 0 0 ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4 ENST00000520239.1_1_8:70042334-70042577:+|nuORF ENST00000520239.1_1_8:70042334-70042577:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.695068359375 2 523.771854 1045.52915 -0.39633 -0.00020759 0.95721 0.00050136 0.56088 0.00029377 523.7722373436652 128.33 0.46368 123.51 123.27 123.73 -4.817 15 12 2 0 0 0 0.57447 1 24657 24657 14.838 0 1 982280 46076 5809 30649 30669 45359 45359 0.008211251355305649 TLDRDRVRNV 10 Unmodified _TLDRDRVRNV_ 0 0 0 ENST00000314531.4_1_19:2934583-2934736:-|nuORF ENST00000314531.4_1_19:2934583-2934736:-|nuORF ENST00000314531.4_1_19:2934583-2934736:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.755126953125 2 622.346917 1242.67928 0.70427 0.0004383 2.3756 0.0014784 3.0798 0.0019167 622.8503873805212 167.26 0.20029 162.36 162.23 162.43 -4.8916 7 5 2 0 0 0 0.87854 1 32862 32862 9.3831 1.2276 1 24811000 46077 8671 30650 30670 45360 45360 0.06764909917842488 TLDRIRTWFW 10 Unmodified _TLDRIRTWFW_ 0 0 0 ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-4|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2 ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2491149902344 3 465.250695 1392.73025 NaN NaN NaN NaN NaN NaN NaN 141 1 136.35 135.85 136.85 -4.6493 0 0 0 2.8426 1 27847 27847 0.013265 0.0073095 1 46078 3948;12342 30651 30671 45361 45361 0.04959858962706676 TLDRIRTWFW 10 Unmodified _TLDRIRTWFW_ 0 0 0 ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-4|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2 ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25006103515625 3 465.250695 1392.73025 NaN NaN NaN NaN NaN NaN NaN 141.36 1 136.37 135.87 136.87 -4.9877 0 0 0 2.8426 1 27219 27219 0.013265 0.0073095 1 46079 3948;12342 30651 30671 45362 45362 0.04959858962706676 TLDSLLPCGY 10 Unmodified _TLDSLLPCGY_ 0 0 0 REV__ENSG00000126705|ENST00000673934|AHDC1 REV__ENSG00000126705|ENST00000673934|AHDC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.282958984375 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 72.595 1 69.284 68.784 69.784 -3.3107 0 0 0 0.22576 1 14148 14148 14.838 2.3067 1 + 46080 15861 30652 30672 45363 45363 -0.02089029248213592 TLDTMCCS 8 Unmodified _TLDTMCCS_ 0 0 0 REV__ENST00000316715.8_1_X:13789363-13789450:-|nuORF REV__ENST00000316715.8_1_X:13789363-13789450:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2271423339844 2 437.161182 872.307811 NaN NaN NaN NaN NaN NaN NaN 33.567 1 31.42 30.92 31.92 -2.1468 0 0 0 0.23782 1 5858 5858 0.30703 0.18417 1 + 46081 20526 30653 30673 45364 45364 -0.13345097428452846 TLDTRTVDY 9 Unmodified _TLDTRTVDY_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65;ENST00000463683.1_1_2:219894468-219900288:-|nuORF ENSG00000181378|ENST00000341552|CFAP65;ENST00000463683.1_1_2:219894468-219900288:-|nuORF ENSG00000181378|ENST00000341552|CFAP65 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7713012695312 2 542.269478 1082.5244 0.042195 2.2881E-05 0.37512 0.00020342 0.41731 0.0002263 542.2696253716831 41.482 0.721 38.848 38.468 39.189 -2.6348 58 20 4 0 0 0 0.36931 1 7727 7727 27.629 9.4825 1 7877800 46082 6721;10102 30654 30674 45365 45365 -0.013557590072423409 TLDTRTVDY 9 Unmodified _TLDTRTVDY_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65;ENST00000463683.1_1_2:219894468-219900288:-|nuORF ENSG00000181378|ENST00000341552|CFAP65;ENST00000463683.1_1_2:219894468-219900288:-|nuORF ENSG00000181378|ENST00000341552|CFAP65 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7747192382812 2 542.269478 1082.5244 -0.020017 -1.0855E-05 0.53477 0.00028999 0.51475 0.00027913 542.2696249800186 41.448 0.69453 38.797 38.409 39.103 -2.651 53 19 4 0 0 0 0.58804 1 7425 7425 13.906 0.86358 1 6941900 46083 6721;10102 30654 30674 45366 45366 -0.013557590072423409 TLDTRTVDY 9 Unmodified _TLDTRTVDY_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65;ENST00000463683.1_1_2:219894468-219900288:-|nuORF ENSG00000181378|ENST00000341552|CFAP65;ENST00000463683.1_1_2:219894468-219900288:-|nuORF ENSG00000181378|ENST00000341552|CFAP65 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.269478 1082.5244 0.44301 0.00024023 -0.18184 -9.8605E-05 0.26117 0.00014163 542.2693335749394 38.754 0.63633 38.754 38.354 38.99 0 -0.064268 -0.00048988 NaN 27.629 45 17 3 NaN NaN NaN NaN 0 NaN NaN 0 7438900 46084 6721;10102 30654 30674 -0.013557590072423409 TLDTRTVDY 9 Unmodified _TLDTRTVDY_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65;ENST00000463683.1_1_2:219894468-219900288:-|nuORF ENSG00000181378|ENST00000341552|CFAP65;ENST00000463683.1_1_2:219894468-219900288:-|nuORF ENSG00000181378|ENST00000341552|CFAP65 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.269478 1082.5244 0.1395 7.5646E-05 0.27171 0.00014734 0.41121 0.00022299 542.269538160346 41.365 0.80873 38.875 38.459 39.268 -2.4896 0.056584 2.01E-06 NaN 27.629 54 22 3 NaN NaN NaN NaN 0 NaN NaN 0 6389200 46085 6721;10102 30654 30674 -0.013557590072423409 TLDTYLVIE 9 Unmodified _TLDTYLVIE_ 0 0 0 nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;nc|ENSG00000160145|O60229-6|KALRN;nc|ENSG00000160145|O60229-4|KALRN nc|ENSG00000160145|O60229|KALRN nc|ENSG00000160145|O60229|KALRN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2846069335938 2 533.786973 1065.55939 0.25622 0.00013677 0.6936 0.00037023 0.94982 0.000507 533.7872821937945 159.32 0.64142 154.53 154.19 154.83 -4.7952 24 17 2 0 0 0 0.65155 1 31672 31672 28.487 10.352 1 2212900 46086 12404 30655 30675 45367 45367 0.02923483800714166 TLDVPDAFYY 10 Unmodified _TLDVPDAFYY_ 0 0 0 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2813110351562 2 602.282054 1202.54956 NaN NaN NaN NaN NaN NaN NaN 85.384 1 85.384 84.884 85.884 0 0 0 0 2.8426 1 16664 16664 0.51642 0 1 46087 2921 30656 30676 45368 45368 -0.04361704204666239 TLDVPDAFYY 10 Unmodified _TLDVPDAFYY_ 0 0 0 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2818603515625 2 602.282054 1202.54956 NaN NaN NaN NaN NaN NaN NaN 89.603 1 85.559 85.059 86.059 -4.0443 0 0 0 0.22535 1 17075 17075 20.454 7.4112 1 46088 2921 30656 30676 45369 45369 -0.04361704204666239 TLECTLKPG 9 Unmodified _TLECTLKPG_ 0 0 0 nc|ENSG00000188766|Q2MJR0-2|SPRED3;ENSG00000188766|ENST00000691638|SPRED3 nc|ENSG00000188766|Q2MJR0-2|SPRED3 nc|ENSG00000188766|Q2MJR0-2|SPRED3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2549133300781 2 481.254785 960.495018 -0.12099 -5.8229E-05 0.54791 0.00026368 0.42692 0.00020546 481.25499327573965 56.283 0.48399 53.388 53.166 53.65 -2.8944 21 13 2 0 0 0 0.25702 1 10795 10795 34.102 3.4659 1 4562100 46089 7193 30657 30677 45370 45370 0.013190054429401243 TLECTLKPG 9 Unmodified _TLECTLKPG_ 0 0 0 nc|ENSG00000188766|Q2MJR0-2|SPRED3;ENSG00000188766|ENST00000691638|SPRED3 nc|ENSG00000188766|Q2MJR0-2|SPRED3 nc|ENSG00000188766|Q2MJR0-2|SPRED3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2435607910156 2 481.254785 960.495018 -0.038298 -1.8431E-05 0.56838 0.00027354 0.53009 0.00025511 481.2550258070866 56.583 0.56422 53.407 53.187 53.751 -3.1761 22 15 2 0 0 0 0.16442 1 10516 10516 42.095 13.013 1 2399300 46090 7193 30657 30677 45371 45371 0.013190054429401243 TLEEELPKRVR 11 Unmodified _TLEEELPKRVR_ 0 0 0 ENST00000589104.5_1_19:5070919-5151519:+|nuORF;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B ENST00000589104.5_1_19:5070919-5151519:+|nuORF ENST00000589104.5_1_19:5070919-5151519:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 457.26568603515625 3 457.264781 1368.77251 NaN NaN NaN NaN NaN NaN NaN 159.88 1 155.09 154.59 155.59 -4.7952 0 0 0 0.22632 1 31790 31790 0.0059557 0 1 46091 3488 30658 30678 45372 45372 0.102877895804113 TLEEEPVL 8 Unmodified _TLEEEPVL_ 0 0 0 REV__tr|U7T3I8|U7T3I8_FUSNUTranscriptiontermination/antiterminationproteinNusGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusGPE=3SV=1 REV__tr|U7T3I8|U7T3I8_FUSNUTranscriptiontermination/antiterminationproteinNusGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusGPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2439270019531 2 465.244941 928.475328 NaN NaN NaN NaN NaN NaN NaN 108.27 1 103.95 103.45 104.45 -4.32 0 0 0 0.21486 1 21331 21331 9.3474 0 1 + 46092 25360 30659 30679 45373 45373 0.008229527038110973 TLEEEWTRLEK 11 Unmodified _TLEEEWTRLEK_ 0 0 0 REV__ENSG00000006432|ENST00000554752|MAP3K9 REV__ENSG00000006432|ENST00000554752|MAP3K9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7221984863281 3 478.580546 1432.71981 NaN NaN NaN NaN NaN NaN NaN 14.278 1 13.164 12.664 13.664 -1.1142 0 0 0 0.23698 1 2130 2130 1.3296 0 1 + 46093 13874 30660 30680 45374 45374 0.020757867269367125 TLEEFSYDYFR 11 Unmodified _TLEEFSYDYFR_ 0 0 0 nc|ENSG00000137474|Q13402-7|MYO7A;ENST00000481328.7_1_11:76905078-76923312:+|nuORF;nc|ENSG00000137474|Q13402-5|MYO7A;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A nc|ENSG00000137474|Q13402-7|MYO7A nc|ENSG00000137474|Q13402-7|MYO7A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.271240234375 3 490.55763 1468.65106 NaN NaN NaN NaN NaN NaN NaN 147.91 1 147.91 147.41 148.41 0 0 0 0 0.22632 1 29592 29592 0.50596 0 1 46094 12347 30661 30681 45375 45375 -0.06451877572794729 TLEERRWE 8 Unmodified _TLEERRWE_ 0 0 0 ENSG00000268350|ENST00000622447|FAM156A;ENSG00000179304|ENST00000416841|FAM156B ENSG00000268350|ENST00000622447|FAM156A ENSG00000268350|ENST00000622447|FAM156A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.5129699707031 3 373.524484 1117.55162 0.05831 2.178E-05 -0.50934 -0.00019025 -0.45103 -0.00016847 373.52428138023294 20.45 0.69816 19.053 18.585 19.283 -1.3966 49 19 5 0 0 0 0.79017 1 3402 3402 3.2813 0.78282 1 30097000 46095 6624 30662 30682 45376 45376 -0.0024523067620521033 TLEERRWE 8 Unmodified _TLEERRWE_ 0 0 0 ENSG00000268350|ENST00000622447|FAM156A;ENSG00000179304|ENST00000416841|FAM156B ENSG00000268350|ENST00000622447|FAM156A ENSG00000268350|ENST00000622447|FAM156A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 373.524484 1117.55162 -0.21632 -8.0802E-05 -0.055697 -2.0804E-05 -0.27202 -0.00010161 373.52446691344085 18.909 0.58829 18.909 18.548 19.136 0 -0.12016 0.00026926 NaN 3.2813 50 16 5 NaN NaN NaN NaN 0 NaN NaN 0 41004000 46096 6624 30662 30682 -0.0024523067620521033 TLEERRWE 8 Unmodified _TLEERRWE_ 0 0 0 ENSG00000268350|ENST00000622447|FAM156A;ENSG00000179304|ENST00000416841|FAM156B ENSG00000268350|ENST00000622447|FAM156A ENSG00000268350|ENST00000622447|FAM156A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 373.524484 1117.55162 -0.23591 -8.8117E-05 -2.5879 -0.00096666 -2.8239 -0.0010548 373.8579063813318 20.509 0.27942 19.125 19.062 19.341 -1.3847 0.095881 -0.0025683 NaN 3.2813 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 881910 46097 6624 30662 30682 -0.0024523067620521033 TLEESNSGPL 10 Unmodified _TLEESNSGPL_ 0 0 0 ENSG00000170836|ENST00000305921|PPM1D;ENST00000392995.7_1_17:58734367-58740910:+|nuORF ENSG00000170836|ENST00000305921|PPM1D ENSG00000170836|ENST00000305921|PPM1D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6773071289062 2 523.753661 1045.49277 NaN NaN NaN NaN NaN NaN NaN 159.95 1 154.7 154.2 155.2 -5.2526 0 0 0 0.22569 1 31038 31038 15.847 0 1 46098 6100 30663 30683 45377 45377 -0.02815751761181673 TLEHVIFA 8 Unmodified _TLEHVIFA_ 0 0 0 tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1 tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1 tr|U7STB6|U7STB6_FUSNUAdenosylmethionine-8-amino-7-oxononanoateaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bioAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2578430175781 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 137.92 1 137.92 137.42 138.42 0 0 0 0 0.18985 1 27369 27369 28.173 3.4993 1 46099 26138 30664 30684 45378 45378 0.034706863857991266 TLELFSVNR 9 Unmodified _TLELFSVNR_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 93.318 1 89.327 88.827 89.827 -3.9907 0 0 0 0.22823 1 18275 18275 15.248 3.0078 1 46100 5053 30665 30685 45379 45379 0.046171279889904326 TLELGDSALY 10 Unmodified _TLELGDSALY_ 0 0 0 nc|ENSG00000211734|A0A578|TRBV5-1 nc|ENSG00000211734|A0A578|TRBV5-1 nc|ENSG00000211734|A0A578|TRBV5-1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2759399414062 2 541.274229 1080.53391 0.10668 5.7745E-05 -1.3557 -0.00073379 -1.249 -0.00067605 541.7742580316257 52.541 0.56074 49.454 49.025 49.586 -3.0876 25 15 3 0 0 0 0.30531 1 9642 9642 14.611 2.3831 1 1466500 46101 12576 30666 30686 45380 45380 -0.0031399072172462184 TLELLDKRG 9 Unmodified _TLELLDKRG_ 0 0 0 REV__ENST00000332598.6_1_5:177022417-177022558:+|nuORF REV__ENST00000332598.6_1_5:177022417-177022558:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2749633789062 2 522.806031 1043.59751 0.13108 6.8527E-05 0.60423 0.00031589 0.7353 0.00038442 522.8063413935553 97.952 0.64596 94.032 93.856 94.502 -3.9194 24 18 2 0 0 0 0.85913 1 18860 18860 6.2058 0 1 1603500 + 46102 20628 30667 30687 45381 45381 0.07745414506052839 TLEMIQLVP 9 Unmodified _TLEMIQLVP_ 0 0 0 ENST00000530657.1_1_11:85906626-85907241:+|nuORF ENST00000530657.1_1_11:85906626-85907241:+|nuORF ENST00000530657.1_1_11:85906626-85907241:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.27734375 2 522.293911 1042.57327 -0.16827 -8.7885E-05 1.2781 0.00066756 1.1099 0.00057968 522.2964640514828 141.43 0.30672 136.78 136.51 136.81 -4.6493 14 8 3 0 0 0 0.069289 1 27882 27882 2.8827 0.25143 1 4051200 46103 10958 30668 30688 45382 45382 0.053684380281538324 TLEMIQLVP 9 Unmodified _TLEMIQLVP_ 0 0 0 ENST00000530657.1_1_11:85906626-85907241:+|nuORF ENST00000530657.1_1_11:85906626-85907241:+|nuORF ENST00000530657.1_1_11:85906626-85907241:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2576904296875 2 522.293911 1042.57327 0.32414 0.00016929 2.6772 0.0013983 3.0013 0.0015676 522.7963556838275 141.31 0.1367 136.45 136.36 136.5 -4.8678 5 3 2 0 0 0 0.46541 1 27268 27268 21.747 6.9084 1 1307400 46104 10958 30668 30688 45383 45383 0.053684380281538324 TLEQPELP 8 Unmodified _TLEQPELP_ 0 0 0 REV__ENSG00000105131|ENST00000221730|EPHX3 REV__ENSG00000105131|ENST00000221730|EPHX3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2493591308594 2 463.745108 925.475663 0.034495 1.5997E-05 0.036115 1.6748E-05 0.07061 3.2745E-05 463.74503435030874 58.021 1.1276 54.77 54.113 55.241 -3.2517 94 31 4 0 0 0 8448 1 10783 10783 2.643 0.90076 1 20153000 + 46105 14962 30669 30689 45384 45384 0.009943724236563867 TLETAALVY 9 Unmodified _TLETAALVY_ 0 0 0 REV__ENSG00000110628|ENST00000649076|SLC22A18 REV__ENSG00000110628|ENST00000649076|SLC22A18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2757873535156 2 490.768583 979.522613 0.18458 9.0586E-05 0.067525 3.3139E-05 0.2521 0.00012372 490.7684561889833 121.79 0.66422 121.79 121.4 122.06 0 37 18 3 0 0 0 0.32599 1 24009 24009 28.487 0 1 3413300 + 46106 15207 30670 30690 45385 45385 0.032032319747941074 TLETEKAQY 9 Unmodified _TLETEKAQY_ 0 0 0 ENST00000470322.5_1_10:104242584-104242881:-|nuORF;ENSG00000138107|ENST00000369905|ACTR1A ENST00000470322.5_1_10:104242584-104242881:-|nuORF ENST00000470322.5_1_10:104242584-104242881:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7839965820312 2 541.771854 1081.52915 0.084539 4.5801E-05 -0.10135 -5.491E-05 -0.016813 -9.1088E-06 541.7717103086392 55.809 0.62141 52.633 52.281 52.903 -3.1761 58 17 5 0 0 0 0.55979 1 10361 10361 15.847 3.3156 1 46587000 46107 4151 30671 30691 45386 45386 -0.008348748644721127 TLEVSEQR 8 Unmodified _TLEVSEQR_ 0 0 0 REV__FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant REV__FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2494812011719 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 126.01 1 121.41 120.91 121.91 -4.5984 0 0 0 0.22674 1 24843 24843 14.838 13.623 1 + 46108 14834 30672 30692 45387 45387 0.005799891668630153 TLFDPIYS 8 Unmodified _TLFDPIYS_ 0 0 0 REV__ENSG00000125962|ENST00000473968|ARMCX5 REV__ENSG00000125962|ENST00000473968|ARMCX5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72802734375 2 478.242201 954.469849 NaN NaN NaN NaN NaN NaN NaN 134.15 1 134.15 133.65 134.65 0 0 0 0 0.22692 1 26549 26549 3.5871 3.3356 1 + 46109 15845 30673 30693 45388 45388 -0.009207260879975365 TLFERSSRKW 10 Unmodified _TLFERSSRKW_ 0 0 0 REV__UBE3B|p.F731Lfs*71|1|0.07|ENSG00000151148|chr12:109521260-109521260|T/-|frameshift_variant REV__UBE3B|p.F731Lfs*71|1|0.07|ENSG00000151148|chr12:109521260-109521260|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2152404785156 3 437.238566 1308.69387 -1.7827 -0.00077948 -1.8227 -0.00079695 -3.6054 -0.0015764 437.23769485722784 13.743 0.13264 12.533 12.443 12.576 -1.2106 11 3 4 0 0 0 0.91149 1 1746 1746 8.4443 0 1 315980 + 46110 25512 30674 30694 45389 45389 0.051869820659931065 TLFIAHDHHES 11 Unmodified _TLFIAHDHHES_ 0 0 0 REV__ENSG00000156140|ENST00000286657|ADAMTS3 REV__ENSG00000156140|ENST00000286657|ADAMTS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21490478515625 3 436.210676 1305.6102 -0.25125 -0.0001096 0.058397 2.5474E-05 -0.19285 -8.4125E-05 436.21066752145816 72.768 1.183 69.457 68.954 70.137 -3.3107 89 32 5 0 0 0 0.78947 1 14112 14112 5.0475 5.0475 1 40616000 + 46111 17247 30675 30695 45390 45390 -0.030381741016981323 TLFLKYLY 8 Unmodified _TLFLKYLY_ 0 0 0 ENST00000583108.5_1_17:65735015-65739972:+|nuORF;ENSG00000130935|ENST00000253247|NOL11 ENST00000583108.5_1_17:65735015-65739972:+|nuORF ENST00000583108.5_1_17:65735015-65739972:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 530.5225219726562 2 530.807511 1059.60047 0.10499 5.5727E-05 -3.5397 -0.0018789 -3.4347 -0.0018231 530.8059951558503 137.86 0.48271 137.86 137.77 138.25 0 20 13 2 0 0 0 0.27927 1 27373 27373 6.3914 2.8044 1 3103500 46112 3649 30676 30696 45391 45391 0.07305289630835432 TLFLKYLY 8 Unmodified _TLFLKYLY_ 0 0 0 ENST00000583108.5_1_17:65735015-65739972:+|nuORF;ENSG00000130935|ENST00000253247|NOL11 ENST00000583108.5_1_17:65735015-65739972:+|nuORF ENST00000583108.5_1_17:65735015-65739972:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 530.807511 1059.60047 0.071508 3.7957E-05 -4.0416 -0.0021453 -3.9701 -0.0021074 530.8053754630919 142.39 0.45248 137.73 137.61 138.07 -4.656 -0.067813 3.443E-05 NaN 6.3914 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3336800 46113 3649 30676 30696 0.07305289630835432 TLFLKYLY 8 Unmodified _TLFLKYLY_ 0 0 0 ENST00000583108.5_1_17:65735015-65739972:+|nuORF;ENSG00000130935|ENST00000253247|NOL11 ENST00000583108.5_1_17:65735015-65739972:+|nuORF ENST00000583108.5_1_17:65735015-65739972:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 530.807511 1059.60047 0.33632 0.00017852 -4.4112 -0.0023415 -4.0749 -0.002163 530.8054276016625 142.71 0.56981 137.81 137.42 137.99 -4.8982 0.0094473 -0.00035788 NaN 6.3914 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1739900 46114 3649 30676 30696 0.07305289630835432 TLFMKLRMILI 11 Unmodified _TLFMKLRMILI_ 0 0 0 REV__ENSG00000177990|ENST00000324472|DPY19L2 REV__ENSG00000177990|ENST00000324472|DPY19L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23095703125 3 460.28195 1377.82402 NaN NaN NaN NaN NaN NaN NaN 83.361 1 79.753 79.253 80.253 -3.6079 0 0 0 0.22632 1 16295 16295 0.00056442 0 1 + 46115 18583 30677 30697 45392 45392 0.1502211874915247 TLFPLFQVN 9 Unmodified _TLFPLFQVN_ 0 0 0 REV__ENST00000484157.5_1_1:155108136-155110067:+|nuORF REV__ENST00000484157.5_1_1:155108136-155110067:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2029113769531 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 173.83 1 173.83 173.33 174.33 0 0 0 0 0.23508 1 35963 35963 1.0715 0 1 + 46116 18090 30678 30698 45393 45393 0.050192174827316194 TLFPSKIGV 9 Unmodified _TLFPSKIGV_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2471618652344 2 481.289485 960.564418 -0.0031017 -1.4928E-06 0.033234 1.5995E-05 0.030132 1.4502E-05 481.28953286726005 130.98 0.74345 130.98 130.62 131.36 0 46 20 3 0 0 0 0.041463 3 25894 25894;25926;25957 51.415 46.699 1 7761000 46117 2818 30679 30699 45394;45395;45396 45394 0.08255832453994572 TLFPSKIGV 9 Unmodified _TLFPSKIGV_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2427978515625 2 481.289485 960.564418 0.045182 2.1746E-05 -0.1201 -5.7804E-05 -0.074921 -3.6059E-05 481.2894924252617 135.26 0.80463 130.62 130.27 131.08 -4.6399 65 22 4 0 0 0 0.054027 6 26671 26659;26671;26674;26682;26706;26707 61.602 48.469 1 18604000 46118 2818 30679 30699 45397;45398;45399;45400;45401;45402 45398 0.08255832453994572 TLFPSKIGV 9 Unmodified _TLFPSKIGV_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77398681640625 2 481.289485 960.564418 0.085392 4.1098E-05 -0.13914 -6.6966E-05 -0.053747 -2.5868E-05 481.2894685775316 135.51 0.70528 130.62 130.29 131 -4.8951 50 19 3 0 0 0 0.054027 1 26025 26025 59.368 51.891 1 13998000 46119 2818 30679 30699 45403 45403 0.08255832453994572 TLFPSKIGV 9 Unmodified _TLFPSKIGV_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2415466308594 2 481.289485 960.564418 0.15258 7.3437E-05 -0.11945 -5.7488E-05 0.033138 1.5949E-05 481.2894509759794 135.48 0.85364 130.65 130.27 131.13 -4.8307 69 23 4 0 0 0 0.065852 4 26063 26043;26063;26065;26151 57.722 40.516 1 13468000 46120 2818 30679 30699 45404;45405;45406;45407 45405 0.08255832453994572 TLFTEKQL 8 Unmodified _TLFTEKQL_ 0 0 0 REV__nc|ENSG00000156299|Q13009-2|TIAM1 REV__nc|ENSG00000156299|Q13009-2|TIAM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.275634765625 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 138.18 1 133.54 133.04 134.04 -4.6413 0 0 0 0.18898 1 27278 27278 28.487 1.6032 1 + 46121 17255 30680 30700 45408 45408 0.04846938211710494 TLFWLFRI 8 Unmodified _TLFWLFRI_ 0 0 0 ENSG00000171492|ENST00000337338|LRRC8D ENSG00000171492|ENST00000337338|LRRC8D ENSG00000171492|ENST00000337338|LRRC8D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7884521484375 2 548.32112 1094.62769 0.31355 0.00017193 -2.354 -0.0012907 -2.0404 -0.0011188 548.3175988985506 153.15 0.21652 148.39 148.3 148.51 -4.7684 6 5 2 0 0 0 1.0011 1 30421 30421 7.9102 0 1 1067000 46122 6150 30681 30701 45409 45409 0.084158179618953 TLFYSCFY 8 Unmodified _TLFYSCFY_ 0 0 0 ENST00000553576.5_1_14:77901517-77909492:-|nuORF;nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39 ENST00000553576.5_1_14:77901517-77909492:-|nuORF ENST00000553576.5_1_14:77901517-77909492:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.263916015625 2 522.230779 1042.447 NaN NaN NaN NaN NaN NaN NaN 152.34 1 147.59 147.09 148.09 -4.7523 0 0 0 0.23711 1 30270 30270 0.12286 0 1 46123 4867 30682 30702 45410 45410 -0.0725206847712343 TLGAEQLAQL 10 Unmodified _TLGAEQLAQL_ 0 0 0 REV__ENSG00000124104|ENST00000491381|SNX21 REV__ENSG00000124104|ENST00000491381|SNX21 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2659912109375 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 127.48 1 122.86 122.36 123.36 -4.6172 0 0 0 0.14075 1 25139 25139 38.176 5.8701 1 + 46124 15750 30683 30703 45411 45411 0.04629421752088092 TLGELLDL 8 Unmodified _TLGELLDL_ 0 0 0 REV__ENSG00000198947|ENST00000357033|DMD;REV__UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant REV__UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2356872558594 2 437.250026 872.485499 NaN NaN NaN NaN NaN NaN NaN 92.137 1 92.137 91.637 92.637 0 0 0 0 0.21452 1 18012 18012 13.508 0 1 + 46125 17125;13700 30684 30704 45412 45412 0.04415560429049492 TLGELLDL 8 Unmodified _TLGELLDL_ 0 0 0 REV__ENSG00000198947|ENST00000357033|DMD;REV__UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant REV__UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21661376953125 2 437.250026 872.485499 NaN NaN NaN NaN NaN NaN NaN 92.162 1 92.162 91.662 92.662 0 0 0 0 0.2074 1 18017 18017 19.439 0 1 + 46126 17125;13700 30684 30704 45413 45413 0.04415560429049492 TLGFQGHR 8 Unmodified _TLGFQGHR_ 0 0 0 ENST00000574857.1_1_17:2275569-2275836:+|nuORF;nc|ENSG00000141258|O43147-3|SGSM2 ENST00000574857.1_1_17:2275569-2275836:+|nuORF ENST00000574857.1_1_17:2275569-2275836:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2416687011719 2 458.243401 914.472249 0.32305 0.00014804 -0.83648 -0.00038331 -0.51343 -0.00023528 458.2422567640981 37.144 0.37335 37.144 36.887 37.261 0 19 10 3 0 0 0 0.62642 1 6845 6845 20.454 0 1 744830 46127 11447 30685 30705 45414 45414 0.01159167160335528 TLGHLHDSY 9 Unmodified _TLGHLHDSY_ 0 0 0 nc|ENSG00000198369|Q7Z698-2|SPRED2;ENSG00000198369|ENST00000356388|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.279296875 2 521.751256 1041.48796 -0.48668 -0.00025392 4.1745 0.002178 3.6878 0.0019241 522.7538371749223 103.54 0.80096 99.196 98.854 99.655 -4.346 52 22 3 0 0 0 0.46541 1 19784 19784 21.747 8.2388 1 3832400 46128 7445 30686 30706 45415 45415 -0.031125911132676265 TLGHLHDSY 9 Unmodified _TLGHLHDSY_ 0 0 0 nc|ENSG00000198369|Q7Z698-2|SPRED2;ENSG00000198369|ENST00000356388|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2645263671875 2 521.751256 1041.48796 0.65868 0.00034367 3.2237 0.001682 3.8824 0.0020257 522.2549524661372 103.29 0.88866 99.273 98.77 99.659 -4.0212 57 22 3 0 0 0 0.55979 1 19811 19811 15.847 2.3393 1 2435300 46129 7445 30686 30706 45416 45416 -0.031125911132676265 TLGKGRCD 8 Unmodified _TLGKGRCD_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.237548828125 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 114.45 1 110.14 109.64 110.64 -4.3136 0 0 0 0.21486 1 22042 22042 7.2892 0 1 + 46130 16823 30687 30707 45417 45417 -0.012835877026077469 TLGLAAYGY 9 Unmodified _TLGLAAYGY_ 0 0 0 PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENSG00000068976|ENST00000164139|PYGM;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant;ENSG00000100994|ENST00000216962|PYGB;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;PYGM|p.M148T|1|0.18|ENSG00000068976|chr11:64758331-64758331|A/G|missense_variant;ENST00000530336.2_1_14:51390668-51411121:-|nuORF PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 175.53 1 170.65 170.15 171.15 -4.8739 0 0 0 0.19623 1 34907 34907 0.0033805 0 1 46131 1985 30688 30708 45418 45418 0.00354693631857117 TLGNVLVTV 9 Unmodified _TLGNVLVTV_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant;EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2288818359375 2 458.279118 914.543683 0.35976 0.00016487 -0.087313 -4.0014E-05 0.27244 0.00012486 458.2790459065881 151.41 0.87694 146.24 145.86 146.73 -5.1759 54 24 3 0 0 0 0.071315 1 29404 29404 22.621 13.655 1 11028000 46132 1798 30689 30709 45419 45419 0.08299242074349422 TLGNVLVTV 9 Unmodified _TLGNVLVTV_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant;EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.279118 914.543683 0.26129 0.00011974 -0.16657 -7.6336E-05 0.094722 4.3409E-05 458.2789839045333 146.3 0.79805 146.3 145.94 146.74 0 0.058733 -0.00013969 NaN 22.621 54 22 3 NaN NaN NaN NaN 0 NaN NaN 0 8887000 46133 1798 30689 30709 0.08299242074349422 TLGNVLVTV 9 Unmodified _TLGNVLVTV_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant;EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.279118 914.543683 0.017774 8.1455E-06 0.22619 0.00010366 0.24396 0.0001118 458.279174727588 150.87 0.80725 146.14 145.75 146.55 -4.7323 -0.1037 0.00022029 NaN 22.621 60 22 3 NaN NaN NaN NaN 0 NaN NaN 0 13464000 46134 1798 30689 30709 0.08299242074349422 TLGNVLVTV 9 Unmodified _TLGNVLVTV_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant;EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.279118 914.543683 0.086655 3.9712E-05 -0.012363 -5.6659E-06 0.074292 3.4046E-05 458.2791072552004 151.53 0.81035 146.29 145.9 146.71 -5.2365 0.051457 1.6492E-06 NaN 22.621 54 22 3 NaN NaN NaN NaN 0 NaN NaN 0 10410000 46135 1798 30689 30709 0.08299242074349422 TLGPAPPP 8 Unmodified _TLGPAPPP_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-4|CACNA1I REV__nc|ENSG00000100346|Q9P0X4-4|CACNA1I MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21282958984375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 60.222 1 60.222 59.722 60.722 0 0 0 0 0.21486 1 11543 11543 5.7604 0 1 + 46136 14696 30690 30710 45420 45420 0.02767056777236121 TLGPERSEGP 10 Unmodified _TLGPERSEGP_ 0 0 0 REV__ENST00000466134.5_1_21:45745049-45746742:+|nuORF REV__ENST00000466134.5_1_21:45745049-45746742:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.1764221191406 3 348.176972 1041.50909 NaN NaN NaN NaN NaN NaN NaN 14.032 1 12.918 12.418 13.418 -1.1142 0 0 0 2.8426 1 2076 2076 0.043787 0 1 + 46137 21964 30691 30711 45421 45421 -0.01000625804408628 TLGPGSSSPL 10 Unmodified _TLGPGSSSPL_ 0 0 0 REV__ENSG00000099991|ENST00000263119|CABIN1 REV__ENSG00000099991|ENST00000263119|CABIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2339172363281 2 458.242732 914.470912 -0.032546 -1.4914E-05 0.18169 8.3257E-05 0.14914 6.8343E-05 458.2426754166649 39.465 0.41989 37.023 36.821 37.241 -2.4419 19 11 2 0 0 0 0.78938 1 7053 7053 21.537 0 1 664610 + 46138 14653 30692 30712 45422 45422 0.010254882809135779 TLGPPCAP 8 Unmodified _TLGPPCAP_ 0 0 0 ENST00000425673.5_1_19:39903285-39903747:+|nuORF ENST00000425673.5_1_19:39903285-39903747:+|nuORF ENST00000425673.5_1_19:39903285-39903747:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.892578125 2 378.191457 754.368361 NaN NaN NaN NaN NaN NaN NaN 57.383 1 57.383 56.883 57.883 0 0 0 0 0.23366 1 10969 10969 0.12286 0 1 46139 9718 30693 30713 45423 45423 -0.018648759915549817 TLGPRGGVTV 10 Unmodified _TLGPRGGVTV_ 0 0 0 REV__ENSG00000124743|ENST00000370905|KLHL31 REV__ENSG00000124743|ENST00000370905|KLHL31 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7213134765625 2 478.779816 955.545079 -0.11808 -5.6536E-05 -0.19471 -9.3222E-05 -0.31279 -0.00014976 478.7796744387789 25.493 0.41562 23.64 23.432 23.847 -1.8534 24 11 3 0 0 0 0.85084 1 4218 4218 14.405 8.1996 1 797440 + 46140 15792 30694 30714 45424 45424 0.06552876163095789 TLHGEPDY 8 Unmodified _TLHGEPDY_ 0 0 0 REV__ENSG00000009694|ENST00000371130|TENM1 REV__ENSG00000009694|ENST00000371130|TENM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.2217102050781 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 4.6408 1 3.6008 3.1008 4.1008 -1.04 0 0 0 0.21486 1 129 129 0.45834 0 1 + 46141 13910 30695 30715 45425 45425 -0.059676577873005954 TLHPEIHSL 9 Unmodified _TLHPEIHSL_ 0 0 0 REV__ENSG00000253309|ENST00000681248|SERPINE3 REV__ENSG00000253309|ENST00000681248|SERPINE3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6956787109375 2 523.785099 1045.55564 0.30213 0.00015825 -1.1287 -0.00059119 -0.82655 -0.00043293 523.7843091297233 99.803 1.0684 95.816 95.077 96.145 -3.9864 58 30 3 0 0 0 0.54058 1 19084 19084 19.626 19.218 1 8711100 + 46142 19834 30696 30716 45426 45426 0.03468858817518594 TLHSPEWS 8 Unmodified _TLHSPEWS_ 0 0 0 ENSG00000122870|ENST00000373886|BICC1;BICC1|p.E49G|1|0.5|ENSG00000122870|chr10:58513289-58513289|A/G|missense_variant;BICC1|p.P501Hfs*18|1|0.03|ENSG00000122870|chr10:58798530-58798530|C/-|frameshift_variant;BICC1|p.I566Sfs*5|1|0.57|ENSG00000122870|chr10:58799217-58799217|A/-|frameshift_variant;nc|ENSG00000122870|Q9H694-2|BICC1;BICC1|p.I566Nfs*44|1|0.3|ENSG00000122870|chr10:58799216-58799217|-/A|frameshift_variant ENSG00000122870|ENST00000373886|BICC1;BICC1|p.I566Nfs*44|1|0.3|ENSG00000122870|chr10:58799216-58799217|-/A|frameshift_variant ENSG00000122870|ENST00000373886|BICC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7257080078125 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 143.8 1 138.91 138.41 139.41 -4.8982 0 0 0 0.21486 1 27756 27756 9.3474 1.4373 1 46143 3245;318 30697 30717 45427 45427 -0.03955665033333844 TLHTASSQMA 10 Unmodified _TLHTASSQMA_ 0 0 0 REV__CCDC15|p.S196Ifs*6|2|0.29|ENSG00000149548|chr11:124975152-124975153|-/A|frameshift_variant REV__CCDC15|p.S196Ifs*6|2|0.29|ENSG00000149548|chr11:124975152-124975153|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6773681640625 2 523.750398 1045.48624 NaN NaN NaN NaN NaN NaN NaN 93.827 1 89.836 89.336 90.336 -3.9907 0 0 0 0.22588 1 18380 18380 13.042 2.8591 1 + 46144 13285 30698 30718 45428 45428 -0.03467968193535853 TLHTPHEA 8 Unmodified _TLHTPHEA_ 0 0 0 ENST00000518928.1_1_8:143381726-143407541:-|nuORF ENST00000518928.1_1_8:143381726-143407541:-|nuORF ENST00000518928.1_1_8:143381726-143407541:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.2276306152344 2 453.227417 904.44028 NaN NaN NaN NaN NaN NaN NaN 33.608 1 31.461 30.961 31.961 -2.1468 0 0 0 0.23025 1 5868 5868 0.68139 0.42991 1 46145 10813 30699 30719 45429 45429 -0.01576245313481195 TLHTQLPTL 9 Unmodified _TLHTQLPTL_ 0 0 0 REV__ENSG00000254440|ENST00000527246|PBOV1 REV__ENSG00000254440|ENST00000527246|PBOV1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 512.2936401367188 2 512.295299 1022.57605 NaN NaN NaN NaN NaN NaN NaN 169.82 1 165.03 164.53 165.53 -4.7898 0 0 0 0.12107 1 34420 34420 0.87518 0.49559 1 + 46146 19846 30700 30720 45430 45430 0.0656602947731244 TLIAGHRY 8 Unmodified _TLIAGHRY_ 0 0 0 REV__ENST00000373115.4_1_10:73772609-73772870:+|nuORF REV__ENST00000373115.4_1_10:73772609-73772870:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.7603454589844 2 465.761426 929.5083 NaN NaN NaN NaN NaN NaN NaN 54.964 1 52.081 51.581 52.581 -2.8837 0 0 0 0.22636 1 10504 10504 6.1918 0 1 + 46147 21039 30701 30721 45431 45431 0.04072624337175057 TLIDIMTR 8 Unmodified _TLIDIMTR_ 0 0 0 ENST00000494253.1_1_10:71098016-71144300:+|nuORF;nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1 ENST00000494253.1_1_10:71098016-71144300:+|nuORF ENST00000494253.1_1_10:71098016-71144300:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7701110839844 2 481.770603 961.526652 NaN NaN NaN NaN NaN NaN NaN 166.99 1 162.2 161.7 162.7 -4.7898 0 0 0 0.21486 1 33616 33616 8.5933 0 1 46148 5092 30702 30722 45432 45432 0.04434998196882134 TLIDQIRV 8 Unmodified _TLIDQIRV_ 0 0 0 REV__ENSG00000134744|ENST00000257177|TUT4 REV__ENSG00000134744|ENST00000257177|TUT4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7348937988281 2 479.290017 956.565481 0.54259 0.00026006 -2.1802 -0.001045 -1.6376 -0.0007849 479.29005366261356 122.14 0.4481 117.46 117.27 117.72 -4.6873 24 12 3 0 0 0 0.98537 1 23499 23499 17.113 3.2068 1 883280 + 46149 16224 30703 30723 45433 45433 0.0854604682289164 TLIHQARQL 9 Unmodified _TLIHQARQL_ 0 0 0 REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2741088867188 2 540.31964 1078.62473 -0.027775 -1.5007E-05 -0.12065 -6.5191E-05 -0.14843 -8.0199E-05 540.3194955542867 61.21 0.55081 61.21 60.946 61.496 0 34 15 3 0 0 0 0.38188 1 11715 11715 26.884 1.8927 1 3840400 + 46150 20118 30704 30724 45434 45434 0.0885594283708997 TLIHQARQL 9 Unmodified _TLIHQARQL_ 0 0 0 REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27392578125 2 540.31964 1078.62473 0.23936 0.00012933 -0.69535 -0.00037571 -0.45599 -0.00024638 540.3196421341914 63.947 0.59395 60.949 60.661 61.255 -2.9975 35 16 3 0 0 0 0.6329 1 12336 12336 10.824 3.215 1 2137500 + 46151 20118 30704 30724 45435 45435 0.0885594283708997 TLIHQARQL 9 Unmodified _TLIHQARQL_ 0 0 0 REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.31964 1078.62473 -0.027775 -1.5007E-05 -0.12065 -6.5191E-05 -0.14843 -8.0199E-05 540.3194955542867 61.21 0.55081 61.21 60.946 61.496 0 0.18885 0.00027952 NaN 26.884 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3840400 + 46152 20118 30704 30724 0.0885594283708997 TLIHQARQL 9 Unmodified _TLIHQARQL_ 0 0 0 REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.31964 1078.62473 0.23936 0.00012933 -0.69535 -0.00037571 -0.45599 -0.00024638 540.3196421341914 63.947 0.59395 60.949 60.661 61.255 -2.9975 -0.071952 -0.00034153 NaN 26.884 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2137500 + 46153 20118 30704 30724 0.0885594283708997 TLIHQARQL 9 Unmodified _TLIHQARQL_ 0 0 0 REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.31964 1078.62473 0.30075 0.0001625 -0.35869 -0.00019381 -0.057939 -3.1306E-05 540.3193685197856 64.458 0.63519 61 60.662 61.297 -3.4581 -0.021312 2.2281E-05 NaN 26.884 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2170600 + 46154 20118 30704 30724 0.0885594283708997 TLIHQARQL 9 Unmodified _TLIHQARQL_ 0 0 0 REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.31964 1078.62473 0.36008 0.00019456 -0.54015 -0.00029185 -0.18007 -9.7296E-05 540.3194137974886 64.182 0.49 60.925 60.711 61.201 -3.2567 -0.095583 -0.00017381 NaN 26.884 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2053700 + 46155 20118 30704 30724 0.0885594283708997 TLIKIQKIK 9 Unmodified _TLIKIQKIK_ 0 0 0 DNAJB7|p.A22Lfs*28|1|0.09|ENSG00000172404|chr22:40861932-40861932|T/-|frameshift_variant DNAJB7|p.A22Lfs*28|1|0.09|ENSG00000172404|chr22:40861932-40861932|T/-|frameshift_variant DNAJB7|p.A22Lfs*28|1|0.09|ENSG00000172404|chr22:40861932-40861932|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 362.1971130371094 3 362.253265 1083.73797 NaN NaN NaN NaN NaN NaN NaN 135.34 1 130.44 129.94 130.94 -4.8951 0 0 0 0.23508 1 25997 25997 0.23584 0 1 46156 872 30705 30725 45436 45436 0.19944618230260858 TLIKIVKKT 9 Unmodified _TLIKIVKKT_ 0 0 0 nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2 nc|ENSG00000081803|Q86UW7-3|CADPS2 nc|ENSG00000081803|Q86UW7-3|CADPS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2689208984375 2 522.362985 1042.71142 NaN NaN NaN NaN NaN NaN NaN 151.54 1 146.78 146.28 147.28 -4.7523 0 0 0 0.23508 1 30106 30106 0.52476 0 1 46157 1628 30706 30726 45437 45437 0.1917692933895978 TLIKKLKK 8 Unmodified _TLIKKLKK_ 0 0 0 tr|U7SQK3|U7SQK3_FUSNUSirohydrochlorincobaltochelataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01667PE=4SV=1 tr|U7SQK3|U7SQK3_FUSNUSirohydrochlorincobaltochelataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01667PE=4SV=1 tr|U7SQK3|U7SQK3_FUSNUSirohydrochlorincobaltochelataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01667PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.5471496582031 3 324.570706 970.690287 NaN NaN NaN NaN NaN NaN NaN 13.373 1 13.373 12.873 13.873 0 0 0 0 0.2396 1 1926 1926 0.13829 0.015425 1 46158 26054 30707 30727 45438 45438 0.203769640300834 TLILKIVITIF 11 Unmodified _TLILKIVITIF_ 0 0 0 nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5 nc|ENSG00000171365|P51795-1|CLCN5 nc|ENSG00000171365|P51795-1|CLCN5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2470703125 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 12.608 1 12.608 12.108 13.108 0 0 0 0 0.22632 1 1767 1767 0 0 1 46159 6139 30708 30728 45439 45439 0.21658900267107128 TLILKIVITIF 11 Unmodified _TLILKIVITIF_ 0 0 0 nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5 nc|ENSG00000171365|P51795-1|CLCN5 nc|ENSG00000171365|P51795-1|CLCN5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2470703125 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 12.626 1 12.626 12.126 13.126 0 0 0 0 0.23698 1 1771 1771 0 0 1 46160 6139 30708 30728 45440 45440 0.21658900267107128 TLILKIVITIF 11 Unmodified _TLILKIVITIF_ 0 0 0 nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5 nc|ENSG00000171365|P51795-1|CLCN5 nc|ENSG00000171365|P51795-1|CLCN5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2395324707031 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 57.537 1 54.332 53.832 54.832 -3.2052 0 0 0 0.22632 1 10725 10725 0 0 1 46161 6139 30708 30728 45441 45441 0.21658900267107128 TLILLLFSILK 11 Unmodified _TLILLLFSILK_ 0 0 0 REV__tr|U7SZJ6|U7SZJ6_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00896PE=4SV=1 REV__tr|U7SZJ6|U7SZJ6_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00896PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2543029785156 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 71.631 1 68.092 67.592 68.592 -3.5385 0 0 0 0.23698 1 13579 13579 1.0136 0.38675 1 + 46162 25252 30709 30729 45442 45442 0.21658900267129866 TLILLLLLKV 10 Unmodified _TLILLLLLKV_ 0 0 0 nc|ENSG00000122223|Q9BZW8-4|CD244;nc|ENSG00000122223|Q9BZW8-3|CD244;ENSG00000122223|ENST00000368034|CD244;nc|ENSG00000122223|Q9BZW8|CD244 nc|ENSG00000122223|Q9BZW8-4|CD244 nc|ENSG00000122223|Q9BZW8-4|CD244 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 570.1331787109375 2 569.91231 1137.81007 0.28816 0.00016423 0.41571 0.00023692 0.70387 0.00040114 569.9146459335858 163.43 0.17084 163.43 163.35 163.52 0 5 4 2 0 0 0 1.1333 1 32922 32922 0.0013812 0 1 10394000 46163 3215 30710 30730 45443 45443 0.24667532583976026 TLILNSVTRY 10 Unmodified _TLILNSVTRY_ 0 0 0 REV__nc|ENSG00000155792|Q8TB45-2|DEPTOR REV__nc|ENSG00000155792|Q8TB45-2|DEPTOR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2603149414062 2 590.340238 1178.66592 NaN NaN NaN NaN NaN NaN NaN 116.4 1 111.81 111.31 112.31 -4.5815 0 0 0 0.22588 1 22334 22334 6.2058 0 1 + 46164 17226 30711 30731 45444 45444 0.08373659085918916 TLIRIILI 8 Unmodified _TLIRIILI_ 0 0 0 tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1 tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1 tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.9062805175781 3 318.895189 953.663738 NaN NaN NaN NaN NaN NaN NaN 10.007 1 9.2126 8.7126 9.7126 -0.79424 0 0 0 0.21486 1 1210 1210 0 0 1 46165 26414 30712 30732 45445 45445 0.18505275138772959 TLISDIEAV 9 Unmodified _TLISDIEAV_ 0 0 0 nc|ENSG00000108219|Q8NG11-3|TSPAN14;ENST00000265450.5_1_10:82275833-82277729:+|nuORF;nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14 nc|ENSG00000108219|Q8NG11-3|TSPAN14 nc|ENSG00000108219|Q8NG11-3|TSPAN14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2444152832031 2 480.76604 959.517527 -0.0069973 -3.3641E-06 0.31478 0.00015134 0.30779 0.00014797 480.7660018410483 161.07 0.32329 161.07 160.85 161.17 0 12 8 2 0 0 0 0.25702 1 32331 32331 34.102 5.6156 1 1403300 46166 12277 30713 30733 45446 45446 0.03614928112187954 TLITDGMRSV 10 Unmodified _TLITDGMRSV_ 0 0 0 CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;ENST00000397477.2_1_22:32665833-32665884:+|nuORF CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7921752929688 2 546.789524 1091.56449 -0.28559 -0.00015616 0.39423 0.00021556 0.10864 5.9402E-05 546.7897826775607 107.89 0.97192 103.57 103.03 104.01 -4.32 69 27 3 0 0 0 0.075059 1 21243 21243 71.708 3.6272 1 44829000 46167 717 30714 30734 45447 45447 0.022374643917146386 TLITDGMRSV 10 Unmodified _TLITDGMRSV_ 0 0 0 CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;ENST00000397477.2_1_22:32665833-32665884:+|nuORF CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7919921875 2 546.789524 1091.56449 -0.060036 -3.2827E-05 0.12328 6.7407E-05 0.063241 3.458E-05 546.7896364205251 108.06 0.92885 103.65 103.12 104.05 -4.4121 70 26 3 0 0 0 0.092113 1 20717 20717 63.227 7.0505 1 43712000 46168 717 30714 30734 45448 45448 0.022374643917146386 TLITDGMRSV 10 Unmodified _TLITDGMRSV_ 0 0 0 CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;ENST00000397477.2_1_22:32665833-32665884:+|nuORF CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.789524 1091.56449 0.77046 0.00042128 -0.66902 -0.00036581 0.10143 5.5463E-05 546.7891457544378 107.8 0.90594 103.66 103.15 104.05 -4.135 -0.0060391 -0.00054708 NaN 71.708 49 25 2 NaN NaN NaN NaN 0 NaN NaN 0 29829000 46169 717 30714 30734 0.022374643917146386 TLITTYRL 8 Unmodified _TLITTYRL_ 0 0 0 REV__ENSG00000280021|ENST00000624103|OR51F1;REV__ENSG00000221996|ENST00000624801|OR52B4;REV__nc|ENSG00000176925|Q8NH61|OR51F2 REV__nc|ENSG00000176925|Q8NH61|OR51F2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2757568359375 2 490.792392 979.570232 0.11728 5.7561E-05 -0.60322 -0.00029606 -0.48594 -0.0002385 490.7922581049474 150.32 0.49557 145.2 144.96 145.46 -5.1204 15 13 2 0 0 0 0.72565 1 29143 29143 34.102 3.8776 1 1011300 + 46170 19952;19713;18526 30715 30735 45449 45449 0.07962930965663872 TLITTYRL 8 Unmodified _TLITTYRL_ 0 0 0 REV__ENSG00000280021|ENST00000624103|OR51F1;REV__ENSG00000221996|ENST00000624801|OR52B4;REV__nc|ENSG00000176925|Q8NH61|OR51F2 REV__nc|ENSG00000176925|Q8NH61|OR51F2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.792392 979.570232 0.21268 0.00010438 0.36274 0.00017803 0.57542 0.00028241 490.7925028214119 150.43 0.56374 145.24 144.99 145.55 -5.1994 0.018615 0.00053795 NaN 26.884 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1324500 + 46171 19952;19713;18526 30715 30735 0.07962930965663872 TLIYKNPI 8 Unmodified _TLIYKNPI_ 0 0 0 REV__tr|U7T1W7|U7T1W7_FUSNUDNA-directedRNApolymerasesubunitomegaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoZPE=3SV=1 REV__tr|U7T1W7|U7T1W7_FUSNUDNA-directedRNApolymerasesubunitomegaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoZPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2539978027344 2 481.289485 960.564418 0.090567 4.3589E-05 0.1491 7.1758E-05 0.23966 0.00011535 481.28958264352485 136.69 0.73518 131.78 131.44 132.18 -4.9051 31 20 2 0 0 0 0.64227 1 26217 26217 19.439 2.4967 1 2469400 + 46172 25295 30716 30736 45450 45450 0.08255832453994572 TLKAVKSSK 9 Unmodified _TLKAVKSSK_ 0 0 0 ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant;KDM3B|p.P1317Rfs*10|1|0.45|ENSG00000120733|chr5:138420936-138420936|C/-|frameshift_variant ENSG00000120733|ENST00000314358|KDM3B ENSG00000120733|ENST00000314358|KDM3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.1905212402344 3 321.206203 960.596781 NaN NaN NaN NaN NaN NaN NaN 7.5319 1 6.8528 6.3528 7.3528 -0.67913 0 0 0 0.23508 1 694 694 0.26902 0 1 46173 3152 30717 30737 45451 45451 0.11490619856999729 TLKDDAVKKEL 11 Unmodified _TLKDDAVKKEL_ 0 0 0 ENSG00000132467|ENST00000254803|UTP3 ENSG00000132467|ENST00000254803|UTP3 ENSG00000132467|ENST00000254803|UTP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7525024414062 2 630.36391 1258.71327 1.0918 0.00068822 -2.8348 -0.001787 -1.743 -0.0010987 630.3631034035217 155.37 0.2178 150.59 150.41 150.63 -4.7791 7 5 2 0 0 0 0.8834 1 30849 30849 11.518 3.3624 1 886580 46174 3730 30718 30738 45452 45452 0.09425893566231025 TLKDTITSV 9 Unmodified _TLKDTITSV_ 0 0 0 ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5;COG5|p.K795Rfs*18|1|0.42|ENSG00000164597|chr7:107210547-107210547|T/-|frameshift_variant;nc|ENSG00000164597|Q9UP83-3|COG5 ENSG00000164597|ENST00000297135|COG5 ENSG00000164597|ENST00000297135|COG5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.264892578125 2 489.279315 976.544076 -0.41846 -0.00020475 0.86066 0.0004211 0.4422 0.00021636 489.27960058766627 80.392 1.3213 76.715 76.146 77.468 -3.6764 89 37 4 0 0 0 0.063365 1 15331 15331 66.457 5.0992 1 18300000 46175 5553 30719 30739 45453 45453 0.054866170035211326 TLKFLASLS 9 Unmodified _TLKFLASLS_ 0 0 0 ITGA1|p.F633Lfs*11|1|0.19|ENSG00000213949|chr5:52915500-52915500|T/-|frameshift_variant ITGA1|p.F633Lfs*11|1|0.19|ENSG00000213949|chr5:52915500-52915500|T/-|frameshift_variant ITGA1|p.F633Lfs*11|1|0.19|ENSG00000213949|chr5:52915500-52915500|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2387390136719 2 490.294768 978.574983 NaN NaN NaN NaN NaN NaN NaN 146.32 1 146.32 145.82 146.82 0 0 0 0 0.23508 1 29256 29256 7.2892 0 1 46176 11960 30720 30740 45454 45454 0.08483815108411363 TLKFVVVI 8 Unmodified _TLKFVVVI_ 0 0 0 ENSG00000173535|ENST00000356864|TNFRSF10C ENSG00000173535|ENST00000356864|TNFRSF10C ENSG00000173535|ENST00000356864|TNFRSF10C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2407531738281 2 459.804771 917.59499 NaN NaN NaN NaN NaN NaN NaN 57.052 1 54.158 53.658 54.658 -2.8944 0 0 0 0.23899 1 10946 10946 1.3295 0 1 46177 6299 30721 30741 45455 45455 0.13289610839046873 TLKGATNG 8 Unmodified _TLKGATNG_ 0 0 0 ENSG00000174358|ENST00000304460|SLC6A19 ENSG00000174358|ENST00000304460|SLC6A19 ENSG00000174358|ENST00000304460|SLC6A19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2105712890625 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 107.6 1 103.28 102.78 103.78 -4.32 0 0 0 0.23749 1 21193 21193 0.12286 0 1 46178 6345 30722 30742 45456 45456 0.018129672835243582 TLKILLYIII 10 Unmodified _TLKILLYIII_ 0 0 0 tr|U7SMB9|U7SMB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01894PE=4SV=1 tr|U7SMB9|U7SMB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01894PE=4SV=1 tr|U7SMB9|U7SMB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01894PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2738647460938 2 601.909768 1201.80498 NaN NaN NaN NaN NaN NaN NaN 173.6 1 168.81 168.31 169.31 -4.7898 0 0 0 0.22588 1 35426 35426 1.6526 0 1 46179 26005 30723 30743 45457 45457 0.21215228721348467 TLKIRKRLVF 10 Unmodified _TLKIRKRLVF_ 0 0 0 REV__nc|ENSG00000143036|Q8N4M1-5|SLC44A3 REV__nc|ENSG00000143036|Q8N4M1-5|SLC44A3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.23602294921875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 119.08 1 119.08 118.58 119.58 0 0 0 0 0.22588 1 23459 23459 1.3296 0.11481 1 + 46180 16697 30724 30744 45458 45458 0.21390489652821998 TLKIRKRLVF 10 Unmodified _TLKIRKRLVF_ 0 0 0 REV__nc|ENSG00000143036|Q8N4M1-5|SLC44A3 REV__nc|ENSG00000143036|Q8N4M1-5|SLC44A3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25372314453125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 70.683 1 67.434 66.934 67.934 -3.2492 0 0 0 0.22588 1 13758 13758 0.62683 0.4675 1 + 46181 16697 30724 30744 45459 45459 0.21390489652821998 TLKKAKLL 8 Unmodified _TLKKAKLL_ 0 0 0 REV__nc|ENSG00000166477|Q8WVC0-2|LEO1 REV__nc|ENSG00000166477|Q8WVC0-2|LEO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2324523925781 2 457.823495 913.632438 NaN NaN NaN NaN NaN NaN NaN 13.222 1 13.222 12.722 13.722 0 0 0 0 0.2396 1 1894 1894 0.30703 0 1 + 46182 17853 30725 30745 45460 45460 0.1721670210464481 TLKKGLLKKLF 11 Unmodified _TLKKGLLKKLF_ 0 0 0 REV__ENSG00000137860|ENST00000347644|SLC28A2 REV__ENSG00000137860|ENST00000347644|SLC28A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 645.1705322265625 2 644.939391 1287.86423 0.41805 0.00026962 -1.2984 -0.00083742 -0.88039 -0.0005678 644.9382168799435 164.46 0.17116 164.46 164.4 164.57 0 5 4 2 0 0 0 0.96209 1 33285 33285 0.30703 0.30703 1 12106000 + 46183 16421 30726 30746 45461 45461 0.23181124735560843 TLKKHKLKHK 10 Unmodified _TLKKHKLKHK_ 0 0 0 ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant;ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12;ANKRD12|p.L711Kfs*5|1|0.41|ENSG00000101745|chr18:9255395-9255396|TT/-|frameshift_variant;ANKRD12|p.K983Nfs*4|1|0.36|ENSG00000101745|chr18:9256209-9256209|A/-|frameshift_variant;ANKRD12|p.S984Ifs*7|1|0.2|ENSG00000101745|chr18:9256208-9256209|-/A|frameshift_variant;ANKRD12|p.D1018Rfs*2|1|0.34|ENSG00000101745|chr18:9256313-9256314|-/A|frameshift_variant ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7640380859375 2 630.916781 1259.81901 NaN NaN NaN NaN NaN NaN NaN 96.181 1 96.181 95.681 96.681 0 0 0 0 2.8426 1 18841 18841 0.0013812 0.0008168 1 46184 159 30727 30747 45462 45462 0.19949318993008092 TLKLEDKL 8 Unmodified _TLKLEDKL_ 0 0 0 CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.T718Pfs*5|1|0.11|ENSG00000143702|chr1:243165808-243165808|T/-|frameshift_variant;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;CEP170|p.N481Ifs*26|1|0.13|ENSG00000143702|chr1:243185903-243185903|T/-|frameshift_variant;CEP170|p.N204Tfs*11|1|0.26|ENSG00000143702|chr1:243199080-243199080|T/-|frameshift_variant;CEP170|p.A226Qfs*31|1|0.08|ENSG00000143702|chr1:243191450-243191451|-/CATTG|frameshift_variant;ENST00000522522.5_1_1:243375035-243388582:-|nuORF CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24359130859375 2 480.292225 958.569897 0.70962 0.00034082 -0.63538 -0.00030517 0.074239 3.5656E-05 480.291887158387 105.12 1.2646 101.03 100.27 101.53 -4.0913 52 35 2 0 0 0 8448 1 20270 20270 0.62683 0 1 1034500 46185 490 30728 30748 45463 45463 0.08895511245793841 TLKLKKVV 8 Unmodified _TLKLKKVV_ 0 0 0 REV__ENST00000443754.1_1_9:67328347-67334199:-|nuORF REV__ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698913574219 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 12.672 1 12.672 12.172 13.172 0 0 0 0 0.21486 1 1781 1781 1.3295 0 1 + 46186 21733 30729 30749 45464 45464 0.18136988621699857 TLKPLLSPLL 10 Unmodified _TLKPLLSPLL_ 0 0 0 ENST00000589246.1_1_17:75493182-75494737:+|nuORF ENST00000589246.1_1_17:75493182-75494737:+|nuORF ENST00000589246.1_1_17:75493182-75494737:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7745361328125 2 547.862818 1093.71108 NaN NaN NaN NaN NaN NaN NaN 142.45 1 137.79 137.29 138.29 -4.656 0 0 0 2.8426 1 28159 28159 0.043787 0 1 46187 11585 30730 30750 45465 45465 0.16797509619095763 TLKPVPLLKG 10 Unmodified _TLKPVPLLKG_ 0 0 0 REV__ENST00000520664.1_1_5:159845681-159845876:-|nuORF REV__ENST00000520664.1_1_5:159845681-159845876:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2755737304688 2 533.35516 1064.69577 NaN NaN NaN NaN NaN NaN NaN 115.18 1 110.87 110.37 111.37 -4.3136 0 0 0 2.8426 1 22177 22177 0.13989 0 1 + 46188 22639 30731 30751 45466 45466 0.16600642821890688 TLKRFCRSI 9 Unmodified _TLKRFCRSI_ 0 0 0 ENST00000432648.7_1_1:39469742-39469931:+|nuORF ENST00000432648.7_1_1:39469742-39469931:+|nuORF ENST00000432648.7_1_1:39469742-39469931:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2193298339844 3 375.218337 1122.63318 NaN NaN NaN NaN NaN NaN NaN 56.461 1 53.285 52.785 53.785 -3.1761 0 0 0 0.23508 1 10506 10506 7.609 1.4032 1 46189 9800 30732 30752 45467 45467 0.07677173482056787 TLKRKRKKKK 10 Unmodified _TLKRKRKKKK_ 0 0 0 REV__ENST00000437916.2_1_2:45148822-45149500:-|nuORF REV__ENST00000437916.2_1_2:45148822-45149500:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 438.5638122558594 3 438.645379 1312.91431 NaN NaN NaN NaN NaN NaN NaN 13.552 1 12.379 11.879 12.879 -1.173 0 0 0 2.8426 1 1768 1768 0 0 1 + 46190 21681 30733 30753 45468 45468 0.2703667218404462 TLKSEEFQKRL 11 Unmodified _TLKSEEFQKRL_ 0 0 0 ENSG00000014257|ENST00000336375|ACP3;nc|ENSG00000014257|P15309-2|ACP3 ENSG00000014257|ENST00000336375|ACP3 ENSG00000014257|ENST00000336375|ACP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2398986816406 3 460.261148 1377.76161 NaN NaN NaN NaN NaN NaN NaN 90.745 1 86.7 86.2 87.2 -4.0443 0 0 0 0.22632 1 17286 17286 3.0723 3.0409 1 46191 1106 30734 30754 45469 45469 0.08784387206128486 TLKSSQIFAKG 11 Unmodified _TLKSSQIFAKG_ 0 0 0 REV__ENSG00000197372|ENST00000359788|ZNF675 REV__ENSG00000197372|ENST00000359788|ZNF675 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2625732421875 2 590.340238 1178.66592 NaN NaN NaN NaN NaN NaN NaN 169.86 1 165.07 164.57 165.57 -4.7898 0 0 0 0.22595 1 34433 34433 11.495 3.3392 1 + 46192 19330 30735 30755 45470 45470 0.08373659085896179 TLKVDNLTY 9 Unmodified _TLKVDNLTY_ 0 0 0 nc|ENSG00000263465|Q9BRL6-2|SRSF8;ENSG00000263465|ENST00000587424|SRSF8 nc|ENSG00000263465|Q9BRL6-2|SRSF8 nc|ENSG00000263465|Q9BRL6-2|SRSF8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26806640625 2 533.792589 1065.57063 0.30839 0.00016462 -0.26763 -0.00014286 0.040754 2.1754E-05 533.7925129327595 124.27 0.61779 119.68 119.33 119.95 -4.5926 36 16 3 0 0 0 0.49746 1 23888 23888 2.6312 2.2516 1 2257700 46193 7972 30736 30756 45471 45471 0.04046305894848956 TLKVKDRKKKK 11 Unmodified _TLKVKDRKKKK_ 0 0 0 ENST00000484427.5_1_20:47835892-47850293:+|nuORF;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27 ENST00000484427.5_1_20:47835892-47850293:+|nuORF ENST00000484427.5_1_20:47835892-47850293:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 686.46142578125 2 686.461553 1370.90855 NaN NaN NaN NaN NaN NaN NaN 176.88 1 176.88 176.38 177.38 0 0 0 0 0.22632 1 36642 36642 0.026206 0 1 46194 3305 30737 30757 45472 45472 0.23793528881719794 TLKVRFLLRK 10 Unmodified _TLKVRFLLRK_ 0 0 0 REV__ENST00000451653.5_2_3:42589735-42590053:-|nuORF REV__ENST00000451653.5_2_3:42589735-42590053:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.23797607421875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 80.292 1 80.292 79.792 80.792 0 0 0 0 0.22588 1 15632 15632 0.69767 0 1 + 46195 21809 30738 30758 45473 45473 0.21390489652821998 TLLEEFIWPL 10 Unmodified _TLLEEFIWPL_ 0 0 0 REV__TEX19|p.R148I|1|0.29|ENSG00000182459|chr17:82362593-82362593|G/T|missense_variant REV__TEX19|p.R148I|1|0.29|ENSG00000182459|chr17:82362593-82362593|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7586669921875 2 630.847364 1259.68018 NaN NaN NaN NaN NaN NaN NaN 93.475 1 93.475 92.975 93.975 0 0 0 0 0.22588 1 18289 18289 6.7232 0.99131 1 + 46196 24787 30739 30759 45474 45474 0.06072311514208195 TLLFIKVL 8 Unmodified _TLLFIKVL_ 0 0 0 REV__tr|U7SFW4|U7SFW4_FUSNUTriacylglycerollipaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02258PE=4SV=1 REV__tr|U7SFW4|U7SFW4_FUSNUTriacylglycerollipaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02258PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 474.2789001464844 2 473.820421 945.62629 -0.096628 -4.5784E-05 0.29725 0.00014084 0.20062 9.5058E-05 473.8205627788296 107.56 0.54994 103.15 102.89 103.44 -4.4121 19 15 2 0 0 0 0.89712 1 20601 20601 0.0082765 0 1 1055500 + 46197 24863 30740 30760 45475 45475 0.15130183873145597 TLLFIKVL 8 Unmodified _TLLFIKVL_ 0 0 0 REV__tr|U7SFW4|U7SFW4_FUSNUTriacylglycerollipaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02258PE=4SV=1 REV__tr|U7SFW4|U7SFW4_FUSNUTriacylglycerollipaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02258PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 473.820421 945.62629 0.2595 0.00012296 0.34225 0.00016216 0.60175 0.00028512 473.82037954065873 103.27 0.54519 103.27 103 103.54 0 0.053924 -0.0001144 NaN 0.0082765 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1265300 + 46198 24863 30740 30760 0.15130183873145597 TLLFIKVL 8 Unmodified _TLLFIKVL_ 0 0 0 REV__tr|U7SFW4|U7SFW4_FUSNUTriacylglycerollipaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02258PE=4SV=1 REV__tr|U7SFW4|U7SFW4_FUSNUTriacylglycerollipaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02258PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 473.820421 945.62629 -0.48322 -0.00022896 0.75893 0.0003596 0.27572 0.00013064 473.82071187969666 107.55 0.45432 103.23 102.96 103.42 -4.32 0.011941 0.00028047 NaN 0.0082765 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1018100 + 46199 24863 30740 30760 0.15130183873145597 TLLHAGGLARA 11 Unmodified _TLLHAGGLARA_ 0 0 0 ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant;ENSG00000225968|ENST00000424383|ELFN1 ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015686035156 3 360.548852 1078.62473 -0.54861 -0.0001978 0.48959 0.00017652 -0.05902 -2.128E-05 360.549008660004 61.207 0.61904 61.207 60.911 61.53 0 53 17 4 0 0 0 0.30813 1 11755 11755 44.945 16.45 1 10282000 46200 936 30741 30761 45476 45476 0.08855942837112707 TLLHAGGLARA 11 Unmodified _TLLHAGGLARA_ 0 0 0 ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant;ENSG00000225968|ENST00000424383|ELFN1 ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2130126953125 3 360.548852 1078.62473 -0.21853 -7.8792E-05 0.14435 5.2045E-05 -0.074184 -2.6747E-05 360.54890087583925 63.957 0.70023 60.959 60.625 61.325 -2.9975 47 19 3 0 0 0 0.41687 1 12388 12388 39.923 16.133 1 7347100 46201 936 30741 30761 45477 45477 0.08855942837112707 TLLHAGGLARA 11 Unmodified _TLLHAGGLARA_ 0 0 0 ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant;ENSG00000225968|ENST00000424383|ELFN1 ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.21527099609375 3 360.548852 1078.62473 0.20407 7.3578E-05 -0.28032 -0.00010107 -0.076251 -2.7492E-05 360.5487265892155 64.468 0.77498 61.01 60.662 61.437 -3.4581 53 21 4 0 0 0 0.71831 1 12023 12023 29.281 13.542 1 6584100 46202 936 30741 30761 45478 45478 0.08855942837112707 TLLHAGGLARA 11 Unmodified _TLLHAGGLARA_ 0 0 0 ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant;ENSG00000225968|ENST00000424383|ELFN1 ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant ELFN1|p.Y51Tfs*115|1|0.16|ENSG00000225968|chr7:1744741-1744741|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 3 360.548852 1078.62473 -0.40609 -0.00014642 0.31677 0.00011421 -0.089319 -3.2204E-05 360.54893140081964 64.177 0.73699 60.92 60.606 61.343 -3.2567 55 20 4 0 0 0 0.75875 1 12019 12019 28.181 18.637 1 7095200 46203 936 30741 30761 45479 45479 0.08855942837112707 TLLHEPGY 8 Unmodified _TLLHEPGY_ 0 0 0 REV__nc|ENSG00000184056|Q9H267-2|VPS33B REV__nc|ENSG00000184056|Q9H267-2|VPS33B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24078369140625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 123.5 1 118.92 118.42 119.42 -4.5757 0 0 0 0.21452 1 24341 24341 13.508 0.97634 1 + 46204 18878 30742 30762 45480 45480 -0.0016619051090174253 TLLHKTFEV 9 Unmodified _TLLHKTFEV_ 0 0 0 REV__TRIM45|p.E332K|1|0.23|ENSG00000134253|chr1:117118262-117118262|C/T|missense_variant REV__TRIM45|p.E332K|1|0.23|ENSG00000134253|chr1:117118262-117118262|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7741088867188 2 544.310949 1086.60735 0.28616 0.00015576 -0.57303 -0.00031191 -0.28687 -0.00015615 544.3105974270723 72.471 0.45358 72.471 72.195 72.648 0 27 12 3 0 0 0 0.77734 1 14041 14041 5.7319 2.7366 1 4503900 + 46205 25480 30743 30763 45481 45481 0.06750602511419856 TLLHKTFEV 9 Unmodified _TLLHKTFEV_ 0 0 0 REV__TRIM45|p.E332K|1|0.23|ENSG00000134253|chr1:117118262-117118262|C/T|missense_variant REV__TRIM45|p.E332K|1|0.23|ENSG00000134253|chr1:117118262-117118262|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 544.310949 1086.60735 0.16924 9.2119E-05 -1.0392 -0.00056565 -0.86996 -0.00047353 544.3103984719681 75.766 0.62952 72.351 72.05 72.679 -3.4151 -0.064347 -0.00045466 NaN 5.7319 37 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3322300 + 46206 25480 30743 30763 0.06750602511419856 TLLHKTFEV 9 Unmodified _TLLHKTFEV_ 0 0 0 REV__TRIM45|p.E332K|1|0.23|ENSG00000134253|chr1:117118262-117118262|C/T|missense_variant REV__TRIM45|p.E332K|1|0.23|ENSG00000134253|chr1:117118262-117118262|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 544.310949 1086.60735 0.29211 0.000159 -0.38912 -0.0002118 -0.097007 -5.2802E-05 544.3106531584391 76.036 0.61476 72.403 72.066 72.681 -3.6337 -0.012617 0.00025304 NaN 5.7319 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4115400 + 46207 25480 30743 30763 0.06750602511419856 TLLIYRRLR 9 Unmodified _TLLIYRRLR_ 0 0 0 nc|ENSG00000122224|Q9HBG7-2|LY9;nc|ENSG00000122224|Q9HBG7-4|LY9;ENSG00000122224|ENST00000263285|LY9 nc|ENSG00000122224|Q9HBG7-2|LY9 nc|ENSG00000122224|Q9HBG7-2|LY9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2908325195312 2 602.387857 1202.76116 0.45105 0.0002717 1.3177 0.00079377 1.7688 0.0010655 602.8901693539498 105.29 0.35218 100.91 100.8 101.15 -4.3764 11 9 2 0 0 0 0.79297 1 20202 20202 2.0598 0 1 1154800 46208 3216 30744 30764 45482 45482 0.16789057067603608 TLLKCLSGK 9 Unmodified _TLLKCLSGK_ 0 0 0 nc|ENSG00000172350|Q9H172-3|ABCG4;nc|ENSG00000172350|Q9H172-2|ABCG4;ENSG00000172350|ENST00000619701|ABCG4 nc|ENSG00000172350|Q9H172-3|ABCG4 nc|ENSG00000172350|Q9H172-3|ABCG4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7655029296875 2 481.788795 961.563038 NaN NaN NaN NaN NaN NaN NaN 160.31 1 155.06 154.56 155.56 -5.2526 0 0 0 0.23508 1 31114 31114 12.241 2.8575 1 46209 6211 30745 30765 45483 45483 0.08071875093583003 TLLKLSLPDH 10 Unmodified _TLLKLSLPDH_ 0 0 0 REV__nc|ENSG00000153086|Q8TDX5-2|ACMSD REV__nc|ENSG00000153086|Q8TDX5-2|ACMSD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 568.8424072265625 2 568.837331 1135.66011 NaN NaN NaN NaN NaN NaN NaN 163.64 1 158.85 158.35 159.35 -4.7898 0 0 0 2.8426 1 32640 32640 0.26539 0 1 + 46210 17133 30746 30766 45484 45484 0.09770560574247611 TLLKQETKY 9 Unmodified _TLLKQETKY_ 0 0 0 XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2 XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2159423828125 3 375.216768 1122.62847 NaN NaN NaN NaN NaN NaN NaN 107.29 1 102.97 102.47 103.47 -4.32 0 0 0 0.23508 1 21125 21125 2.7352 0 1 46211 5399 30747 30767 45485 45485 0.07206567820298915 TLLKQLKEA 9 Unmodified _TLLKQLKEA_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27685546875 2 522.326599 1042.63865 -0.10727 -5.603E-05 0.38172 0.00019938 0.27445 0.00014335 522.3267577510268 60.424 0.5235 60.424 60.138 60.662 0 32 14 3 0 0 0 0.11518 1 11569 11569 64.927 9.6921 1 3786600 46212 26528 30748 30768 45486 45486 0.11903175545535305 TLLKQLKEA 9 Unmodified _TLLKQLKEA_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2822265625 2 522.326599 1042.63865 -0.14782 -7.7209E-05 0.34035 0.00017778 0.19254 0.00010057 522.326691693976 62.978 0.5809 60.003 59.727 60.308 -2.975 39 16 3 0 0 0 0.037046 1 12158 12158 77.049 21.814 1 3631100 46213 26528 30748 30768 45487 45487 0.11903175545535305 TLLKQLKEA 9 Unmodified _TLLKQLKEA_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2783813476562 2 522.326599 1042.63865 -0.53054 -0.00027711 0.80763 0.00042185 0.27709 0.00014473 522.3269985165869 63.547 0.73682 60.131 59.757 60.494 -3.4158 33 20 2 0 0 0 0.50174 1 11899 11899 34.222 19.816 1 2541900 46214 26528 30748 30768 45488 45488 0.11903175545535305 TLLKQLKEA 9 Unmodified _TLLKQLKEA_ 0 0 0 TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS TRRAP-ASNS|1|fusion TRRAP-ASNS|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2681884765625 2 522.326599 1042.63865 0.30267 0.00015809 -0.13294 -6.9437E-05 0.16973 8.8653E-05 522.3265260799403 63.358 0.65411 60.102 59.743 60.398 -3.2567 44 18 3 0 0 0 0.17363 1 11894 11894 55.249 19.636 1 2014700 46215 26528 30748 30768 45489 45489 0.11903175545535305 TLLMKFCLLY 10 Unmodified _TLLMKFCLLY_ 0 0 0 ENST00000443586.5_1_2:111806820-111858723:+|nuORF;nc|ENSG00000153093|Q9NUZ1-2|ACOXL;nc|ENSG00000153093|Q9NUZ1|ACOXL;ENSG00000153093|ENST00000439055|ACOXL ENST00000443586.5_1_2:111806820-111858723:+|nuORF ENST00000443586.5_1_2:111806820-111858723:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76171875 2 622.842713 1243.67087 NaN NaN NaN NaN NaN NaN NaN 89.365 1 85.587 85.087 86.087 -3.7779 0 0 0 0.22588 1 17111 17111 10.824 0 1 46216 4956 30749 30769 45490 45490 0.0587850363265261 TLLMYYLY 8 Unmodified _TLLMYYLY_ 0 0 0 ENST00000171757.2_1_X:78216246-78216354:+|nuORF ENST00000171757.2_1_X:78216246-78216354:+|nuORF ENST00000171757.2_1_X:78216246-78216354:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2801513671875 2 540.277729 1078.54091 0.15751 8.51E-05 1.1094 0.00059937 1.2669 0.00068447 541.280357726598 59.448 0.52409 56.538 56.284 56.808 -2.9105 33 14 3 0 0 0 0.69085 1 11419 11419 15.768 0.92995 1 1183800 46217 8077 30750 30770 45491 45491 0.004776506251801038 TLLNVIKSV 9 Unmodified _TLLNVIKSV_ 0 0 0 ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENST00000538984.1_1_12:26564247-26572125:-|nuORF;ITPR1|p.E2433D|1|0.29|ENSG00000150995|chr3:4811291-4811291|G/T|missense_variant;ITPR1|p.E2433K|1|0.46|ENSG00000150995|chr3:4811289-4811289|G/A|missense_variant ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 493.7790832519531 2 493.815867 985.617182 0.20299 0.00010024 0.18026 8.9013E-05 0.38325 0.00018925 493.8158840390105 153.37 0.56773 148.6 148.26 148.83 -4.7684 23 15 2 0 0 0 0.27464 1 30478 30478 43.982 33.083 1 2239000 46218 3250 30751 30771 45492 45492 0.12379790516808953 TLLNVIKSV 9 Unmodified _TLLNVIKSV_ 0 0 0 ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENST00000538984.1_1_12:26564247-26572125:-|nuORF;ITPR1|p.E2433D|1|0.29|ENSG00000150995|chr3:4811291-4811291|G/T|missense_variant;ITPR1|p.E2433K|1|0.46|ENSG00000150995|chr3:4811289-4811289|G/A|missense_variant ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 493.815867 985.617182 0.15297 7.5541E-05 0.074289 3.6685E-05 0.22726 0.00011223 493.8158277935449 154 0.49036 148.73 148.47 148.96 -5.2669 0.070499 -5.5511E-05 NaN 43.982 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1414300 46219 3250 30751 30771 0.12379790516808953 TLLNVIKSV 9 Unmodified _TLLNVIKSV_ 0 0 0 ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENST00000538984.1_1_12:26564247-26572125:-|nuORF;ITPR1|p.E2433D|1|0.29|ENSG00000150995|chr3:4811291-4811291|G/T|missense_variant;ITPR1|p.E2433K|1|0.46|ENSG00000150995|chr3:4811289-4811289|G/A|missense_variant ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 493.815867 985.617182 0.1788 8.8296E-05 0.14493 7.1569E-05 0.32374 0.00015987 493.81589174920344 153.87 0.49025 148.65 148.48 148.97 -5.2209 -0.0088841 1.4258E-05 NaN 43.982 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 992350 46220 3250 30751 30771 0.12379790516808953 TLLPQLEVM 9 Unmodified _TLLPQLEVM_ 0 0 0 REV__ENSG00000135451|ENST00000257909|TROAP REV__ENSG00000135451|ENST00000257909|TROAP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.273193359375 2 522.293911 1042.57327 NaN NaN NaN NaN NaN NaN NaN 160.78 1 155.52 155.02 156.02 -5.2526 0 0 0 0.18039 1 31198 31198 1.2148 0 1 + 46221 16271 30752 30772 45493 45493 0.053684380281538324 TLLPSYPQY 9 Unmodified _TLLPSYPQY_ 0 0 0 ENST00000545200.5_1_12:6666161-6669478:-|nuORF ENST00000545200.5_1_12:6666161-6669478:-|nuORF ENST00000545200.5_1_12:6666161-6669478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2836303710938 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 73.676 1 70.312 69.812 70.812 -3.3643 0 0 0 0.20628 1 14362 14362 21.747 1.293 1 46222 11116 30753 30773 45494 45494 0.012109208661513549 TLLPSYPQY 9 Unmodified _TLLPSYPQY_ 0 0 0 ENST00000545200.5_1_12:6666161-6669478:-|nuORF ENST00000545200.5_1_12:6666161-6669478:-|nuORF ENST00000545200.5_1_12:6666161-6669478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2835083007812 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 74.304 1 70.628 70.128 71.128 -3.6764 0 0 0 0.20628 1 14048 14048 21.747 1.293 1 46223 11116 30753 30773 45495 45495 0.012109208661513549 TLLPSYPQY 9 Unmodified _TLLPSYPQY_ 0 0 0 ENST00000545200.5_1_12:6666161-6669478:-|nuORF ENST00000545200.5_1_12:6666161-6669478:-|nuORF ENST00000545200.5_1_12:6666161-6669478:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2825927734375 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 74.349 1 70.755 70.255 71.255 -3.594 0 0 0 0.20628 1 14120 14120 21.747 1.293 1 46224 11116 30753 30773 45496 45496 0.012109208661513549 TLLQNKLM 8 Unmodified _TLLQNKLM_ 0 0 0 REV__ENST00000472011.5_1_1:235582749-235612074:+|nuORF REV__ENST00000472011.5_1_1:235582749-235612074:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7839660644531 2 480.78097 959.547388 -0.22484 -0.0001081 0.32769 0.00015755 0.10284 4.9445E-05 480.7810621627617 111.86 0.9481 107.43 106.93 107.87 -4.4231 65 26 3 0 0 0 0.40222 1 22010 22010 32.305 1.0371 1 10389000 + 46225 22045 30754 30774 45497 45497 0.06599588576534643 TLLQTPRH 8 Unmodified _TLLQTPRH_ 0 0 0 REV__nc|ENSG00000148288|Q8N5D6-3|GBGT1 REV__nc|ENSG00000148288|Q8N5D6-3|GBGT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 322.15057373046875 3 322.522414 964.545414 -0.36275 -0.000117 0.2962 9.5532E-05 -0.066549 -2.1464E-05 322.52248141763044 35.303 0.45333 33.026 32.828 33.281 -2.2766 30 12 3 0 0 0 1.0265 1 6177 6177 3.9444 0 1 2911700 + 46226 16966 30755 30775 45498 45498 0.06172295882947765 TLLQTPRH 8 Unmodified _TLLQTPRH_ 0 0 0 REV__nc|ENSG00000148288|Q8N5D6-3|GBGT1 REV__nc|ENSG00000148288|Q8N5D6-3|GBGT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 322.522414 964.545414 -0.46475 -0.00014989 0.47332 0.00015265 0.0085638 2.762E-06 322.52253640124997 33.189 0.42083 33.189 32.92 33.341 0 0.12843 0.0002391 NaN 3.9444 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2912300 + 46227 16966 30755 30775 0.06172295882947765 TLLQTPRH 8 Unmodified _TLLQTPRH_ 0 0 0 REV__nc|ENSG00000148288|Q8N5D6-3|GBGT1 REV__nc|ENSG00000148288|Q8N5D6-3|GBGT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 322.522414 964.545414 -0.57316 -0.00018486 0.39396 0.00012706 -0.1792 -5.7795E-05 322.52248040683344 35.359 0.42425 32.966 32.74 33.164 -2.3938 -0.094738 0.00016232 NaN 3.9444 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2758600 + 46228 16966 30755 30775 0.06172295882947765 TLLQTPRH 8 Unmodified _TLLQTPRH_ 0 0 0 REV__nc|ENSG00000148288|Q8N5D6-3|GBGT1 REV__nc|ENSG00000148288|Q8N5D6-3|GBGT1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 322.522414 964.545414 0.16411 5.2928E-05 -0.17395 -5.6102E-05 -0.0098407 -3.1738E-06 322.52231580937956 35.313 0.48981 33.06 32.776 33.266 -2.2527 0.00017822 -0.00038717 NaN 3.9444 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3211300 + 46229 16966 30755 30775 0.06172295882947765 TLLSDYEVC 9 Unmodified _TLLSDYEVC_ 0 0 0 ENSG00000053372|ENST00000330263|MRTO4 ENSG00000053372|ENST00000330263|MRTO4 ENSG00000053372|ENST00000330263|MRTO4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.28173828125 2 521.741708 1041.46886 -0.56936 -0.00029706 -1.4641 -0.00076389 -2.0335 -0.0010609 521.7409555747113 97.328 0.40553 93.093 92.783 93.189 -4.2348 23 11 3 0 0 0 0.55979 1 18560 18560 15.847 0 1 2899000 46230 1255 30756 30776 45499 45499 -0.05021308519212653 TLLSDYEVC 9 Unmodified _TLLSDYEVC_ 0 0 0 ENSG00000053372|ENST00000330263|MRTO4 ENSG00000053372|ENST00000330263|MRTO4 ENSG00000053372|ENST00000330263|MRTO4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.741708 1041.46886 0.016755 8.7417E-06 -2.556 -0.0013336 -2.5392 -0.0013248 521.7405333936151 96.974 0.37589 93.055 92.783 93.159 -3.9194 0.0080776 -0.00059684 NaN 15.847 18 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1448700 46231 1255 30756 30776 -0.05021308519212653 TLLTDPPTA 9 Unmodified _TLLTDPPTA_ 0 0 0 nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11 nc|ENSG00000160695|Q9H270|VPS11 nc|ENSG00000160695|Q9H270|VPS11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2553405761719 2 464.752933 927.491313 -0.01816 -8.4401E-06 0.22916 0.00010651 0.211 9.8065E-05 464.75287481537083 95.705 0.17545 91.656 91.579 91.754 -4.0496 7 4 2 0 0 0 0.10777 1 18778 18778 67.344 33.241 1 934770 46232 5262 30757 30777 45500 45500 0.024666589407047468 TLLTKPVEI 9 Unmodified _TLLTKPVEI_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;PLCG1|p.L868*|1|0.36|ENSG00000124181|chr20:41169474-41169474|C/-|frameshift_variant nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 507.8438720703125 2 507.3157 1012.61685 0.31048 0.00015751 -0.30429 -0.00015437 0.0061823 3.1364E-06 507.3156107910734 119.62 0.76201 115.15 114.68 115.44 -4.467 48 21 3 0 0 0 0.071486 1 22991 22991 37.075 25.325 1 3744700 46233 3296 30758 30778 45501 45501 0.11104370796954299 TLLTKPVEI 9 Unmodified _TLLTKPVEI_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;PLCG1|p.L868*|1|0.36|ENSG00000124181|chr20:41169474-41169474|C/-|frameshift_variant nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 507.3157 1012.61685 0.18766 9.5205E-05 -0.23749 -0.00012048 -0.049821 -2.5275E-05 507.3155890847861 115.38 0.77245 115.38 115.06 115.84 0 0.22654 -2.1565E-07 NaN 37.075 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 5097600 46234 3296 30758 30778 0.11104370796954299 TLLTKPVEI 9 Unmodified _TLLTKPVEI_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;PLCG1|p.L868*|1|0.36|ENSG00000124181|chr20:41169474-41169474|C/-|frameshift_variant nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 507.3157 1012.61685 0.21196 0.00010753 -0.067018 -3.3999E-05 0.14494 7.3529E-05 507.31561052762567 119.7 0.96111 115.05 114.46 115.42 -4.645 -0.10546 0.00017275 NaN 37.075 53 26 3 NaN NaN NaN NaN 0 NaN NaN 0 3922500 46235 3296 30758 30778 0.11104370796954299 TLMDRVWFWAT 11 Unmodified _TLMDRVWFWAT_ 0 0 0 REV__FOCAD|p.L935F|1|0.29|ENSG00000188352|chr9:20912950-20912950|C/T|missense_variant REV__FOCAD|p.L935F|1|0.29|ENSG00000188352|chr9:20912950-20912950|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 475.75250244140625 3 475.904307 1424.69109 -0.023332 -1.1104E-05 -0.19661 -9.3568E-05 -0.21994 -0.00010467 475.90403196546384 45.496 0.39011 42.655 42.334 42.724 -2.8409 17 10 2 0 0 0 0.65515 1 8558 8558 3.0723 1.6171 1 1046500 + 46236 23544 30759 30779 45502 45502 -0.004266093831802209 TLMDRVWFWAT 11 Unmodified _TLMDRVWFWAT_ 0 0 0 REV__FOCAD|p.L935F|1|0.29|ENSG00000188352|chr9:20912950-20912950|C/T|missense_variant REV__FOCAD|p.L935F|1|0.29|ENSG00000188352|chr9:20912950-20912950|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 475.904307 1424.69109 -0.023332 -1.1104E-05 -0.19661 -9.3568E-05 -0.21994 -0.00010467 475.90403196546384 45.496 0.39011 42.655 42.334 42.724 -2.8409 0.079736 -5.6732E-05 NaN 3.0723 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1046500 + 46237 23544 30759 30779 -0.004266093831802209 TLMDRVWFWAT 11 Unmodified _TLMDRVWFWAT_ 0 0 0 REV__FOCAD|p.L935F|1|0.29|ENSG00000188352|chr9:20912950-20912950|C/T|missense_variant REV__FOCAD|p.L935F|1|0.29|ENSG00000188352|chr9:20912950-20912950|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 475.904307 1424.69109 -0.096586 -4.5966E-05 -0.13715 -6.5269E-05 -0.23373 -0.00011123 475.9042233817259 45.363 0.45568 42.496 42.291 42.747 -2.8665 -0.079736 2.8167E-05 NaN 3.0723 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 894510 + 46238 23544 30759 30779 -0.004266093831802209 TLMELIKS 8 Unmodified _TLMELIKS_ 0 0 0 REV__ENST00000199389.10_1_7:6064410-6066384:-|nuORF REV__ENST00000199389.10_1_7:6064410-6066384:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.14447021484375 3 312.180778 933.520504 NaN NaN NaN NaN NaN NaN NaN 90.241 1 86.381 85.881 86.881 -3.8595 0 0 0 0.21486 1 17656 17656 1.4819 0 1 + 46239 19990 30760 30780 45503 45503 0.05108479965349488 TLMELIKS 8 Unmodified _TLMELIKS_ 0 0 0 REV__ENST00000199389.10_1_7:6064410-6066384:-|nuORF REV__ENST00000199389.10_1_7:6064410-6066384:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.1498107910156 3 312.180778 933.520504 NaN NaN NaN NaN NaN NaN NaN 90.795 1 86.936 86.436 87.436 -3.8595 0 0 0 0.21486 1 17767 17767 1.4819 0 1 + 46240 19990 30760 30780 45504 45504 0.05108479965349488 TLMELIKS 8 Unmodified _TLMELIKS_ 0 0 0 REV__ENST00000199389.10_1_7:6064410-6066384:-|nuORF REV__ENST00000199389.10_1_7:6064410-6066384:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.1342468261719 3 312.180778 933.520504 NaN NaN NaN NaN NaN NaN NaN 92.753 1 88.828 88.328 89.328 -3.9251 0 0 0 0.21486 1 18168 18168 1.4819 0 1 + 46241 19990 30760 30780 45505 45505 0.05108479965349488 TLMLQCPR 8 Unmodified _TLMLQCPR_ 0 0 0 ENST00000422154.6_1_X:102931267-102931336:-|nuORF ENST00000422154.6_1_X:102931267-102931336:-|nuORF ENST00000422154.6_1_X:102931267-102931336:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2516784667969 2 481.251523 960.488493 0.016103 7.7498E-06 0.24577 0.00011828 0.26188 0.00012603 481.25165324421954 107 0.72173 102.59 102.2 102.92 -4.4121 39 20 2 0 0 0 0.58432 1 20566 20566 23.148 0.41214 1 6962000 46242 9677 30761 30781 45506 45506 0.0066678901055183815 TLMMWDYS 8 Unmodified _TLMMWDYS_ 0 0 0 REV__ENSG00000133812|ENST00000256190|SBF2 REV__ENSG00000133812|ENST00000256190|SBF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.690673828125 2 523.719721 1045.42489 NaN NaN NaN NaN NaN NaN NaN 130.19 1 125.42 124.92 125.92 -4.7725 0 0 0 0.23749 1 25051 25051 0.0082765 0 1 + 46243 16179 30762 30782 45507 45507 -0.09600616217198876 TLMSFSPAEI 10 Unmodified _TLMSFSPAEI_ 0 0 0 ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant;ITGAL|p.D890Tfs*9|3|0.12|ENSG00000005844|chr16:30510924-30510924|G/-|frameshift_variant;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL;nc|ENSG00000005844|P20701-3|ITGAL ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant ITGAL|p.P825Rfs*11|2|0.31|ENSG00000005844|chr16:30506817-30506817|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7918090820312 2 548.273175 1094.5318 0.27011 0.00014809 2.3342 0.0012798 2.6043 0.0014279 548.274155270403 99.672 0.84466 95.375 94.971 95.816 -4.297 33 24 2 0 0 0 0.70987 1 19048 19048 30.637 2.1497 1 1967500 46244 997 30763 30783 45508 45508 -0.011687427311699139 TLNDGVVVQV 10 Unmodified _TLNDGVVVQV_ 0 0 0 ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF;ENSG00000145907|ENST00000356245|G3BP1 ENST00000413279.1_1_2:136269117-136269381:-|nuORF ENST00000413279.1_1_2:136269117-136269381:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2646484375 2 522.290214 1042.56587 0.18497 9.6605E-05 0.35513 0.00018548 0.54009 0.00028208 522.2905137699775 112.26 0.65966 112.26 111.9 112.56 0 25 18 2 0 0 0 0.23765 2 22084 22084;22139 41.84 5.4905 1 2204400 46245 4627 30764 30784 45509;45510 45509 0.046294217521108294 TLNDGVVVQV 10 Unmodified _TLNDGVVVQV_ 0 0 0 ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF;ENSG00000145907|ENST00000356245|G3BP1 ENST00000413279.1_1_2:136269117-136269381:-|nuORF ENST00000413279.1_1_2:136269117-136269381:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2803955078125 2 522.290214 1042.56587 -0.10574 -5.5225E-05 0.29688 0.00015506 0.19115 9.9835E-05 522.2903247001905 116.66 0.90848 112.17 111.9 112.81 -4.486 36 25 2 0 0 0 0.10004 2 22983 22983;23075 60.074 7.8056 1 2739200 46246 4627 30764 30784 45511;45512 45511 0.046294217521108294 TLNDGVVVQV 10 Unmodified _TLNDGVVVQV_ 0 0 0 ENST00000413279.1_1_2:136269117-136269381:-|nuORF;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF;ENSG00000145907|ENST00000356245|G3BP1 ENST00000413279.1_1_2:136269117-136269381:-|nuORF ENST00000413279.1_1_2:136269117-136269381:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2810668945312 2 522.290214 1042.56587 0.52689 0.00027519 0.023474 1.226E-05 0.55037 0.00028745 522.2902707481124 116.75 0.66788 112.39 111.99 112.66 -4.3585 34 18 2 0 0 0 0.29449 1 22518 22518 45.7 1.8413 1 2834000 46247 4627 30764 30784 45513 45513 0.046294217521108294 TLNDLMFNL 9 Unmodified _TLNDLMFNL_ 0 0 0 REV__CNOT6L|p.A163T|1|0.4|ENSG00000138767|chr4:77756865-77756865|C/T|missense_variant REV__CNOT6L|p.A163T|1|0.4|ENSG00000138767|chr4:77756865-77756865|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2747802734375 2 540.773342 1079.53213 0.27632 0.00014943 0.11616 6.2817E-05 0.39249 0.00021225 540.7738388281731 112.27 0.31467 112.27 112.14 112.46 0 10 8 2 0 0 0 0.62921 1 22111 22111 30.637 5.2372 1 3532600 + 46248 13463 30765 30785 45514 45514 -0.004453230113085738 TLNDMMTN 8 Unmodified _TLNDMMTN_ 0 0 0 tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 940.3977661132812 1 939.391029 938.383753 0.062275 5.8501E-05 0.80493 0.00075614 0.86721 0.00081464 939.3914279140166 44.004 0.51801 41.214 41.051 41.569 -2.79 18 14 2 0 0 0 0.71876 1 8282 8282 11.64 0 1 923570 46249 26173 30766 30786 45515 45515 -0.08790377256650572 TLNDMMTN 8 Unmodified _TLNDMMTN_ 0 0 0 tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 939.391029 938.383753 0.71957 0.00067596 -0.34948 -0.0003283 0.3701 0.00034767 939.390847649078 41.282 0.52407 41.282 41.023 41.547 0 -0.018517 -0.00052039 NaN 11.64 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1166300 46250 26173 30766 30786 -0.08790377256650572 TLNDMMTN 8 Unmodified _TLNDMMTN_ 0 0 0 tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 939.391029 938.383753 0.19698 0.00018504 1.0151 0.00095354 1.212 0.0011386 939.3915846917316 44.062 0.38157 41.296 41.113 41.495 -2.7661 -0.004498 0.00076145 NaN 11.64 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1028300 46251 26173 30766 30786 -0.08790377256650572 TLNDMMTN 8 Unmodified _TLNDMMTN_ 0 0 0 tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 939.391029 938.383753 0.063723 5.9861E-05 0.29705 0.00027905 0.36077 0.00033891 939.3914886034703 44.158 0.80511 41.41 41.045 41.85 -2.7475 0.10987 8.6952E-05 NaN 11.64 30 22 2 NaN NaN NaN NaN 0 NaN NaN 0 916400 46252 26173 30766 30786 -0.08790377256650572 TLNDPCGGFY 10 Unmodified _TLNDPCGGFY_ 0 0 0 REV__CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant REV__CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.781982421875 2 543.731674 1085.4488 NaN NaN NaN NaN NaN NaN NaN 129.06 1 124.24 123.74 124.74 -4.817 0 0 0 0.22588 1 24772 24772 13.042 0.51092 1 + 46253 13469 30767 30787 45516 45516 -0.09051059459147837 TLNDREYQL 9 Unmodified _TLNDREYQL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;CAD|p.Q638R|1|0.4|ENSG00000084774|chr2:27226201-27226201|A/G|missense_variant ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3233642578125 2 576.288202 1150.56185 0.31016 0.00017874 -0.70785 -0.00040793 -0.39769 -0.00022919 576.2878879722263 73.303 0.74397 73.303 72.953 73.697 0 59 20 4 0 0 0 0.03916 1 14206 14206 74.216 65.303 1 13793000 46254 1673 30768 30788 45517 45517 -0.007406677416156526 TLNDREYQL 9 Unmodified _TLNDREYQL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;CAD|p.Q638R|1|0.4|ENSG00000084774|chr2:27226201-27226201|A/G|missense_variant ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3147583007812 2 576.288202 1150.56185 -0.0071531 -4.1222E-06 -0.056824 -3.2747E-05 -0.063977 -3.6869E-05 576.288186631374 76.989 0.6606 73.574 73.25 73.91 -3.4151 45 18 3 0 0 0 4.2263E-11 1 15003 15003 155.95 59.587 1 17264000 46255 1673 30768 30788 45518 45518 -0.007406677416156526 TLNDREYQL 9 Unmodified _TLNDREYQL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;CAD|p.Q638R|1|0.4|ENSG00000084774|chr2:27226201-27226201|A/G|missense_variant ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.322998046875 2 576.288202 1150.56185 0.15246 8.7861E-05 -0.34283 -0.00019757 -0.19037 -0.00010971 576.2881257892869 77.292 0.66719 73.525 73.193 73.86 -3.7664 59 18 4 0 0 0 0.17734 1 14600 14600 40.239 13.971 1 17220000 46256 1673 30768 30788 45519 45519 -0.007406677416156526 TLNDREYQL 9 Unmodified _TLNDREYQL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant;CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;CAD|p.Q638R|1|0.4|ENSG00000084774|chr2:27226201-27226201|A/G|missense_variant ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3339233398438 2 576.288202 1150.56185 0.12134 6.9924E-05 -0.17563 -0.00010121 -0.054292 -3.1288E-05 576.2881140695393 77.138 0.768 73.48 73.116 73.884 -3.6588 63 21 4 0 0 0 1.4098E-16 1 14669 14669 171.46 64.524 1 15253000 46257 1673 30768 30788 45520 45520 -0.007406677416156526 TLNGLYLW 8 Unmodified _TLNGLYLW_ 0 0 0 ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant;ANKRD50|p.G1144Wfs*12|1|0.39|ENSG00000151458|chr4:124669847-124669848|-/A|frameshift_variant;ANKRD50|p.P1235Hfs*8|2|0.36|ENSG00000151458|chr4:124669573-124669573|G/-|frameshift_variant;nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50 ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26654052734375 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 91.158 1 87.349 86.849 87.849 -3.8083 0 0 0 0.23107 1 17449 17449 0.25148 0 1 46258 164 30769 30789 45521 45521 0.02734972902840127 TLNGYEEGY 9 Unmodified _TLNGYEEGY_ 0 0 0 REV__nc|ENSG00000160323|Q76LX8-3|ADAMTS13 REV__nc|ENSG00000160323|Q76LX8-3|ADAMTS13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6901245117188 2 523.227279 1044.44001 -0.60921 -0.00031875 1.9744 0.0010331 1.3652 0.00071431 523.2284678815489 109.78 0.34405 105.41 105.17 105.52 -4.3776 13 9 2 0 0 0 0.8319 1 21640 21640 12.532 8.2023 1 565790 + 46259 17415 30770 30790 45522 45522 -0.08043709823982681 TLNIPTEE 8 Unmodified _TLNIPTEE_ 0 0 0 ENSG00000102239|ENST00000370648|BRS3 ENSG00000102239|ENST00000370648|BRS3 ENSG00000102239|ENST00000370648|BRS3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22381591796875 2 458.73474 915.454927 -0.05588 -2.5634E-05 3.6971 0.001696 3.6412 0.0016703 458.73607200701815 25.893 0.66174 23.971 23.741 24.402 -1.9222 23 18 2 0 0 0 0.96386 1 4336 4336 10.074 0 1 573630 46260 2119 30771 30791 45523 45523 -0.006182179560028089 TLNIPTEE 8 Unmodified _TLNIPTEE_ 0 0 0 ENSG00000102239|ENST00000370648|BRS3 ENSG00000102239|ENST00000370648|BRS3 ENSG00000102239|ENST00000370648|BRS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.73474 915.454927 0.28783 0.00013204 1.0049 0.000461 1.2928 0.00059304 458.7344608729475 24.332 0.34358 24.332 24.132 24.475 0 0.1807 -0.0016035 NaN 10.074 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 899920 46261 2119 30771 30791 -0.006182179560028089 TLNKFTEEL 9 Unmodified _TLNKFTEEL_ 0 0 0 ENST00000590314.1_1_17:40685554-40685683:+|nuORF;ENST00000484483.1_1_1:32381486-32384666:-|nuORF;nc|ENSG00000184007|Q12974-2|PTP4A2;nc|ENSG00000184007|Q12974-4|PTP4A2;ENSG00000184007|ENST00000647444|PTP4A2 ENST00000590314.1_1_17:40685554-40685683:+|nuORF ENST00000590314.1_1_17:40685554-40685683:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7872314453125 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 105.65 1 101.39 100.89 101.89 -4.2638 0 0 0 0.21469 1 20794 20794 19.257 1.1106 1 46262 11599 30772 30792 45524 45524 0.022500020322468117 TLNLKSVLTY 10 Unmodified _TLNLKSVLTY_ 0 0 0 REV__ENSG00000214107|ENST00000397548|MAGEB1 REV__ENSG00000214107|ENST00000397548|MAGEB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.335693359375 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 64.789 1 64.789 64.289 65.289 0 0 0 0 0.22588 1 12475 12475 8.1555 1.4324 1 + 46263 19659 30773 30793 45525 45525 0.09047140854386271 TLNLYRGSY 9 Unmodified _TLNLYRGSY_ 0 0 0 REV__ENSG00000170364|ENST00000358065|SETMAR REV__ENSG00000170364|ENST00000358065|SETMAR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7839965820312 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 52.712 1 49.624 49.124 50.124 -3.0876 0 0 0 0.23508 1 9696 9696 12.532 0.29089 1 + 46264 18154 30774 30794 45526 45526 0.01120554954900399 TLNLYRGSY 9 Unmodified _TLNLYRGSY_ 0 0 0 REV__ENSG00000170364|ENST00000358065|SETMAR REV__ENSG00000170364|ENST00000358065|SETMAR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7836303710938 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 52.678 1 49.583 49.083 50.083 -3.0954 0 0 0 0.23508 1 9729 9729 12.532 0.89125 1 + 46265 18154 30774 30794 45527 45527 0.01120554954900399 TLNNDVISLY 10 Unmodified _TLNNDVISLY_ 0 0 0 nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4 nc|ENSG00000112769|Q16363-2|LAMA4 nc|ENSG00000112769|Q16363-2|LAMA4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3134155273438 2 576.300778 1150.587 NaN NaN NaN NaN NaN NaN NaN 105.64 1 105.64 105.14 106.14 0 0 0 0 0.22588 1 20762 20762 10.074 0 1 46266 2710 30775 30795 45528 45528 0.017733870609617952 TLNQPAFF 8 Unmodified _TLNQPAFF_ 0 0 0 REV__nc|ENSG00000055957|P19827-2|ITIH1 REV__nc|ENSG00000055957|P19827-2|ITIH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.15521240234375 3 313.164116 936.470518 NaN NaN NaN NaN NaN NaN NaN 104.93 1 100.72 100.22 101.22 -4.2183 0 0 0 0.21486 1 20646 20646 1.8442 0 1 + 46267 14120 30776 30796 45529 45529 -0.00025886648290907033 TLNRYNQW 8 Unmodified _TLNRYNQW_ 0 0 0 REV__ENSG00000141569|ENST00000269383|TRIM65 REV__ENSG00000141569|ENST00000269383|TRIM65 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7785034179688 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 83.246 1 79.638 79.138 80.138 -3.6079 0 0 0 0.23025 1 16273 16273 1.7423 1.4352 1 + 46268 16641 30777 30797 45530 45530 -0.01253195985077582 TLNSAAVTV 9 Unmodified _TLNSAAVTV_ 0 0 0 ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF ENSG00000115216|ENST00000379852|NRBP1 ENSG00000115216|ENST00000379852|NRBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 438.1724548339844 2 438.245275 874.475997 -0.17562 -7.6966E-05 0.27063 0.0001186 0.095007 4.1637E-05 438.2453486120077 75.901 0.56357 72.486 72.189 72.752 -3.4151 36 15 3 0 0 0 0.071315 1 14761 14761 14.987 8.4996 1 7230900 46269 2830 30778 30798 45531 45531 0.033737921435204044 TLNSAAVTV 9 Unmodified _TLNSAAVTV_ 0 0 0 ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF ENSG00000115216|ENST00000379852|NRBP1 ENSG00000115216|ENST00000379852|NRBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 438.245275 874.475997 0.13218 5.7929E-05 -0.12 -5.2589E-05 0.012184 5.3398E-06 438.24522949073423 72.585 0.65372 72.585 72.266 72.919 0 0.0020092 -0.00021459 NaN 14.987 39 18 3 NaN NaN NaN NaN 0 NaN NaN 0 7647900 46270 2830 30778 30798 0.033737921435204044 TLNSAAVTV 9 Unmodified _TLNSAAVTV_ 0 0 0 ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF ENSG00000115216|ENST00000379852|NRBP1 ENSG00000115216|ENST00000379852|NRBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 438.245275 874.475997 0.049593 2.1734E-05 0.10078 4.4166E-05 0.15037 6.59E-05 438.24526796108944 76.356 0.64543 72.633 72.31 72.955 -3.7227 0.049947 -2.1079E-05 NaN 14.987 39 18 3 NaN NaN NaN NaN 0 NaN NaN 0 7129300 46271 2830 30778 30798 0.033737921435204044 TLNSAAVTV 9 Unmodified _TLNSAAVTV_ 0 0 0 ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF ENSG00000115216|ENST00000379852|NRBP1 ENSG00000115216|ENST00000379852|NRBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 438.245275 874.475997 0.023059 1.0105E-05 0.2116 9.2732E-05 0.23466 0.00010284 438.24530442902187 76.263 0.62147 72.629 72.34 72.961 -3.6337 0.045622 7.6052E-05 NaN 14.987 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 7634200 46272 2830 30778 30798 0.033737921435204044 TLNSLKPN 8 Unmodified _TLNSLKPN_ 0 0 0 REV__ENSG00000174125|ENST00000308979|TLR1 REV__ENSG00000174125|ENST00000308979|TLR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 443.2294616699219 2 443.753267 885.491981 -0.086401 -3.8341E-05 0.22093 9.8037E-05 0.13453 5.9696E-05 443.75329487368924 79.453 0.67067 75.943 75.519 76.189 -3.5102 37 18 3 0 0 0 0.60698 1 15547 15547 0.25148 0 1 2696000 + 46273 18393 30779 30799 45532 45532 0.04465498380432109 TLPDTEKQI 9 Unmodified _TLPDTEKQI_ 0 0 0 CON__P02769 CON__P02769 CON__P02769 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6995849609375 2 522.782222 1043.54989 0.20305 0.00010615 0.17591 9.1964E-05 0.37897 0.00019812 522.7821920480276 127.81 0.63093 123.11 122.82 123.45 -4.6998 40 17 3 0 0 0 0.54354 1 24573 24573 16.942 0 1 1998100 + 46274 656 30780 30800 45533 45533 0.029857155152058112 TLPICWKCDY 10 Unmodified _TLPICWKCDY_ 0 0 0 REV__BCR|p.Y756C|1|0.32|ENSG00000186716|chr22:23285062-23285062|A/G|missense_variant REV__BCR|p.Y756C|1|0.32|ENSG00000186716|chr22:23285062-23285062|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7651977539062 2 621.288302 1240.56205 0.29439 0.0001829 -0.33636 -0.00020897 -0.041968 -2.6074E-05 622.2915613739318 92.264 0.57906 88.456 88.14 88.719 -3.8083 44 16 5 0 0 0 0.67319 1 17722 17722 13.906 0 1 2862200 + 46275 13190 30781 30801 45534 45534 -0.04860707337616077 TLPIYLYY 8 Unmodified _TLPIYLYY_ 0 0 0 ENST00000225728.7_1_17:6547672-6547756:-|nuORF ENST00000225728.7_1_17:6547672-6547756:-|nuORF ENST00000225728.7_1_17:6547672-6547756:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6954345703125 2 523.283869 1044.55318 NaN NaN NaN NaN NaN NaN NaN 55.504 1 52.621 52.121 53.121 -2.8837 0 0 0 0.21486 1 10624 10624 10.183 0 1 46276 8142 30782 30802 45535 45535 0.032690103598497444 TLPKLLVKS 9 Unmodified _TLPKLLVKS_ 0 0 0 REV__ENSG00000007376|ENST00000007264|RPUSD1 REV__ENSG00000007376|ENST00000007264|RPUSD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 333.1886291503906 3 333.558466 997.653567 -0.72381 -0.00024143 0.71769 0.00023939 -0.0061242 -2.0428E-06 333.55865825678694 78.865 0.69632 75.189 74.851 75.548 -3.676 44 19 3 0 0 0 0.88425 1 15080 15080 0.96228 0 1 3829900 + 46277 13888 30783 30803 45536 45536 0.15464667413527877 TLPLWAVY 8 Unmodified _TLPLWAVY_ 0 0 0 AGTR1|p.N200Ifs*10|1|0.44|ENSG00000144891|chr3:148741630-148741630|A/-|frameshift_variant;AGTR1|p.F239Lfs*3|1|0.33|ENSG00000144891|chr3:148741748-148741748|T/-|frameshift_variant;AGTR1|p.F309Ifs*2|1|0.56|ENSG00000144891|chr3:148741953-148741954|-/A|frameshift_variant;ENSG00000144891|ENST00000349243|AGTR1 AGTR1|p.N200Ifs*10|1|0.44|ENSG00000144891|chr3:148741630-148741630|A/-|frameshift_variant AGTR1|p.N200Ifs*10|1|0.44|ENSG00000144891|chr3:148741630-148741630|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7852478027344 2 481.770929 961.527304 NaN NaN NaN NaN NaN NaN NaN 84.097 1 84.097 83.597 84.597 0 0 0 0 0.19492 1 16397 16397 26.341 3.1929 1 46278 101 30784 30804 45537 45537 0.04500160908219186 TLPPRVASR 9 Unmodified _TLPPRVASR_ 0 0 0 ENST00000239938.4_1_5:137802790-137802892:+|nuORF ENST00000239938.4_1_5:137802790-137802892:+|nuORF ENST00000239938.4_1_5:137802790-137802892:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.8697204589844 3 332.869814 995.587613 NaN NaN NaN NaN NaN NaN NaN 35.948 1 33.554 33.054 34.054 -2.3938 0 0 0 0.23508 1 6631 6631 4.1895 0 1 46279 8180 30785 30805 45538 45538 0.08964271291324621 TLPRFLQRRS 10 Unmodified _TLPRFLQRRS_ 0 0 0 GAPT|p.S82Pfs*10|1|0.07|ENSG00000175857|chr5:58494779-58494780|-/CCACTAAGAG|frameshift_variant;ENSG00000175857|ENST00000502276|GAPT GAPT|p.S82Pfs*10|1|0.07|ENSG00000175857|chr5:58494779-58494780|-/CCACTAAGAG|frameshift_variant GAPT|p.S82Pfs*10|1|0.07|ENSG00000175857|chr5:58494779-58494780|-/CCACTAAGAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25213623046875 3 425.254439 1272.74149 NaN NaN NaN NaN NaN NaN NaN 128 1 123.18 122.68 123.68 -4.817 0 0 0 0.22588 1 24570 24570 3.0723 1.33 1 46280 6437 30786 30806 45539 45539 0.11602681056820074 TLPVDFVTA 9 Unmodified _TLPVDFVTA_ 0 0 0 nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1 nc|ENSG00000102144|P00558-2|PGK1 nc|ENSG00000102144|P00558-2|PGK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78497314453125 2 481.7633 961.512048 0.24281 0.00011698 -2.0282 -0.0009771 -1.7854 -0.00086012 481.7612682344536 67.39 0.69685 64.063 63.613 64.31 -3.3268 29 19 2 0 0 0 0.48644 1 12736 12736 20.454 3.3407 1 1163900 46281 2112 30787 30807 45540 45540 0.02975249320365947 TLQECQCIFC 10 Unmodified _TLQECQCIFC_ 0 0 0 ENST00000486622.1_1_6:18387777-18402208:+|nuORF;ENSG00000137393|ENST00000259939|RNF144B ENST00000486622.1_1_6:18387777-18402208:+|nuORF ENST00000486622.1_1_6:18387777-18402208:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 396.50128173828125 3 396.501305 1186.48209 NaN NaN NaN NaN NaN NaN NaN 153.61 1 148.84 148.34 149.34 -4.7684 0 0 0 2.8426 1 30528 30528 0.063865 0 1 46282 4081 30788 30808 45541 45541 -0.10369517003118744 TLQEQIEAI 9 Unmodified _TLQEQIEAI_ 0 0 0 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2675170898438 2 522.782222 1043.54989 0.18962 9.9129E-05 -0.5413 -0.00028298 -0.35168 -0.00018385 522.7820774000669 122.98 0.60078 122.98 122.67 123.27 0 26 16 3 0 0 0 0.38759 1 24199 24199 24.882 4.4279 1 3653400 46283 1916 30789 30809 45542 45542 0.029857155152058112 TLQEQIEAI 9 Unmodified _TLQEQIEAI_ 0 0 0 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2659912109375 2 522.782222 1043.54989 -0.13025 -6.8092E-05 0.36356 0.00019006 0.23331 0.00012197 522.7822155677992 127.6 0.53246 122.99 122.78 123.31 -4.6172 33 14 3 0 0 0 0.23492 1 25139 25139 53.833 9.9745 1 2410500 46284 1916 30789 30809 45543 45543 0.029857155152058112 TLQEQIEAI 9 Unmodified _TLQEQIEAI_ 0 0 0 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2705688476562 2 522.782222 1043.54989 -0.47162 -0.00024655 1.1064 0.0005784 0.63476 0.00033184 522.7827524841215 127.93 0.51814 123.11 122.86 123.37 -4.817 36 14 3 0 0 0 0.56623 1 24520 24520 34.402 12.865 1 1444400 46285 1916 30789 30809 45544 45544 0.029857155152058112 TLQKEGVIGV 10 Unmodified _TLQKEGVIGV_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2822265625 2 522.308406 1042.60226 0.37253 0.00019458 -0.58734 -0.00030677 -0.21481 -0.0001122 522.3080795125799 75.551 0.64647 75.551 75.103 75.75 0 25 18 2 0 0 0 0.38172 1 14654 14654 32.037 1.4009 1 1809700 46286 1943 30790 30810 45545 45545 0.08266298648823067 TLQKEGVIGV 10 Unmodified _TLQKEGVIGV_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2566528320312 2 522.308406 1042.60226 -0.1952 -0.00010195 0.15328 8.006E-05 -0.041919 -2.1894E-05 522.3084178922236 78.793 0.63611 75.33 74.929 75.565 -3.4633 37 17 3 0 0 0 0.4324 1 15364 15364 38.615 10.12 1 3825600 46287 1943 30790 30810 45546 45546 0.08266298648823067 TLQKEGVIGV 10 Unmodified _TLQKEGVIGV_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2788696289062 2 522.308406 1042.60226 -0.0011513 -6.0134E-07 -0.26113 -0.00013639 -0.26228 -0.00013699 522.3083803673462 79.062 0.52092 75.386 75.027 75.548 -3.676 33 14 4 0 0 0 0.22509 1 15078 15078 57.249 9.6547 1 3480000 46288 1943 30790 30810 45547 45547 0.08266298648823067 TLQKEIEKV 9 Unmodified _TLQKEIEKV_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7824096679688 2 544.321514 1086.62847 0.56283 0.00030636 -1.2372 -0.00067346 -0.67442 -0.0003671 544.3207631571688 49.661 0.45466 49.661 49.37 49.825 0 18 12 2 0 0 0 0.77644 1 9406 9406 20.415 5.5763 1 1586300 46289 4118 30791 30811 45548 45548 0.08862567820256118 TLQKEIEKV 9 Unmodified _TLQKEIEKV_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7933349609375 2 544.321514 1086.62847 0.068097 3.7066E-05 0.98685 0.00053716 1.0549 0.00057423 544.3216640368279 52.573 0.46242 49.486 49.299 49.761 -3.0876 17 11 2 0 0 0 0.57274 1 9689 9689 15.248 3.6082 1 1365700 46290 4118 30791 30811 45549 45549 0.08862567820256118 TLQNVLRKV 9 Unmodified _TLQNVLRKV_ 0 0 0 nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1 nc|ENSG00000108424|Q14974-2|KPNB1 nc|ENSG00000108424|Q14974-2|KPNB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.56085205078125 3 357.560869 1069.66078 0.19058 6.8145E-05 -0.030244 -1.0814E-05 0.16034 5.7331E-05 357.5606822573829 79.621 0.38237 79.621 79.34 79.722 0 14 10 2 0 0 0 0.74567 1 15512 15512 4.1895 0.60244 1 772760 46291 2473 30792 30812 45550 45550 0.12873400013927494 TLQNVLRKV 9 Unmodified _TLQNVLRKV_ 0 0 0 nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1 nc|ENSG00000108424|Q14974-2|KPNB1 nc|ENSG00000108424|Q14974-2|KPNB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5611572265625 3 357.560869 1069.66078 -0.26854 -9.6019E-05 0.30701 0.00010977 0.038467 1.3754E-05 357.56088497940516 82.349 0.52635 78.763 78.417 78.943 -3.586 20 14 2 0 0 0 0.68708 1 16086 16086 7.1017 1.8048 1 807680 46292 2473 30792 30812 45551 45551 0.12873400013927494 TLQNVLRKV 9 Unmodified _TLQNVLRKV_ 0 0 0 nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1 nc|ENSG00000108424|Q14974-2|KPNB1 nc|ENSG00000108424|Q14974-2|KPNB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.560546875 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 82.672 1 78.798 78.298 79.298 -3.8736 0 0 0 0.19636 1 15709 15709 2.4985 2.4252 1 46293 2473 30792 30812 45552 45552 0.12873400013927494 TLQNVLRKV 9 Unmodified _TLQNVLRKV_ 0 0 0 nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1 nc|ENSG00000108424|Q14974-2|KPNB1 nc|ENSG00000108424|Q14974-2|KPNB1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.56103515625 3 357.560869 1069.66078 NaN NaN NaN NaN NaN NaN NaN 82.735 1 79.037 78.537 79.537 -3.6985 0 0 0 0.23508 1 15780 15780 7.1017 1.8048 1 46294 2473 30792 30812 45553 45553 0.12873400013927494 TLQQFLVL 8 Unmodified _TLQQFLVL_ 0 0 0 REV__ENSG00000197496|ENST00000359271|SLC2A10 REV__ENSG00000197496|ENST00000359271|SLC2A10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77728271484375 2 481.289485 960.564418 0.15258 7.3437E-05 -0.11945 -5.7488E-05 0.033138 1.5949E-05 481.2894509759794 135.48 0.85364 130.65 130.27 131.13 -4.8307 69 23 4 0 0 0 8448 1 26012 26012 1.7423 0 1 13468000 + 46295 19341 30793 30813 45554 45554 0.08255832453994572 TLQQLEALK 9 Unmodified _TLQQLEALK_ 0 0 0 DRGX|p.E49K|1|0.29|ENSG00000165606|chr10:49390222-49390222|C/T|missense_variant DRGX|p.E49K|1|0.29|ENSG00000165606|chr10:49390222-49390222|C/T|missense_variant DRGX|p.E49K|1|0.29|ENSG00000165606|chr10:49390222-49390222|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2821655273438 2 522.308406 1042.60226 -0.75499 -0.00039434 0.8258 0.00043132 0.070811 3.6985E-05 522.3088403815505 79.178 0.59233 75.374 75.02 75.612 -3.8048 27 16 2 0 0 0 0.44932 1 15059 15059 22.736 3.4793 1 2991200 46296 889 30794 30814 45555 45555 0.0826629864880033 TLQQQINL 8 Unmodified _TLQQQINL_ 0 0 0 REV__nc|ENSG00000128487|Q5M775-2|SPECC1 REV__nc|ENSG00000128487|Q5M775-2|SPECC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73785400390625 2 479.271824 956.529095 0.36169 0.00017335 -0.28058 -0.00013448 0.08111 3.8874E-05 479.2716315725881 70.812 0.66425 67.232 66.874 67.538 -3.5798 44 18 3 0 0 0 0.93477 1 13293 13293 24.674 12.142 1 5840600 + 46297 15920 30795 30815 45556 45556 0.04909169926179402 TLQSWCRFY 9 Unmodified _TLQSWCRFY_ 0 0 0 FZD7|p.R558C|1|0.32|ENSG00000155760|chr2:202036319-202036319|C/T|missense_variant FZD7|p.R558C|1|0.32|ENSG00000155760|chr2:202036319-202036319|C/T|missense_variant FZD7|p.R558C|1|0.32|ENSG00000155760|chr2:202036319-202036319|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2825927734375 2 602.284408 1202.55426 NaN NaN NaN NaN NaN NaN NaN 109.66 1 105.21 104.71 105.71 -4.4518 0 0 0 0.23508 1 21047 21047 7.9102 0.62092 1 46298 11832 30796 30816 45557 45557 -0.03891098542885629 TLRDYQKY 8 Unmodified _TLRDYQKY_ 0 0 0 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7801513671875 2 543.782556 1085.55056 0.13947 7.5844E-05 0.14907 8.1061E-05 0.28854 0.00015691 543.782575676134 89.458 0.52493 85.598 85.338 85.863 -3.8595 25 14 2 0 0 0 8448 1 17474 17474 0.68139 0.16497 1 2905200 46299 25984 30797 30817 45558 45558 0.01120554954900399 TLREDWRC 8 Unmodified _TLREDWRC_ 0 0 0 ZNF114|p.Y315Ifs*6|1|0.23|ENSG00000178150|chr19:48286561-48286561|T/-|frameshift_variant;nc|ENSG00000178150|Q8NC26-2|ZNF114;ENSG00000178150|ENST00000595607|ZNF114 ZNF114|p.Y315Ifs*6|1|0.23|ENSG00000178150|chr19:48286561-48286561|T/-|frameshift_variant ZNF114|p.Y315Ifs*6|1|0.23|ENSG00000178150|chr19:48286561-48286561|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20611572265625 3 360.174797 1077.50256 -0.43262 -0.00015582 0.34774 0.00012525 -0.084884 -3.0573E-05 360.17484869076617 36.973 0.31444 34.636 34.349 34.663 -2.3375 12 8 2 0 0 0 1.0265 1 6512 6512 0 0 1 297920 46300 6560 30798 30818 45559 45559 -0.03308842236788223 TLRELLVYI 9 Unmodified _TLRELLVYI_ 0 0 0 PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant;PKD2L1|p.T462Pfs*2|1|0.36|ENSG00000107593|chr10:100295096-100295096|T/-|frameshift_variant;nc|ENSG00000107593|Q9P0L9-4|PKD2L1;nc|ENSG00000107593|Q9P0L9-3|PKD2L1;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1 PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 373.3216857910156 3 373.897258 1118.66995 -0.32924 -0.0001231 -0.19158 -7.1631E-05 -0.52082 -0.00019473 373.89717086808685 48.775 0.55629 45.906 45.588 46.144 -2.869 32 15 3 0 0 0 0.8825 1 9268 9268 1.0715 0.8646 1 2351700 46301 2430 30799 30819 45560 45560 0.11535748579603933 TLRELLVYI 9 Unmodified _TLRELLVYI_ 0 0 0 PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant;PKD2L1|p.T462Pfs*2|1|0.36|ENSG00000107593|chr10:100295096-100295096|T/-|frameshift_variant;nc|ENSG00000107593|Q9P0L9-4|PKD2L1;nc|ENSG00000107593|Q9P0L9-3|PKD2L1;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1 PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 373.897258 1118.66995 0.1593 5.956E-05 -0.75105 -0.00028082 -0.59176 -0.00022126 373.89688959167813 46.126 0.55567 46.126 45.759 46.315 0 0.13367 -0.00029293 NaN 1.0715 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1916900 46302 2430 30799 30819 0.11535748579603933 TLRELLVYI 9 Unmodified _TLRELLVYI_ 0 0 0 PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant;PKD2L1|p.T462Pfs*2|1|0.36|ENSG00000107593|chr10:100295096-100295096|T/-|frameshift_variant;nc|ENSG00000107593|Q9P0L9-4|PKD2L1;nc|ENSG00000107593|Q9P0L9-3|PKD2L1;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1 PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 373.897258 1118.66995 0.024338 9.0997E-06 -0.57724 -0.00021583 -0.5529 -0.00020673 374.2314213322018 48.945 0.55704 45.946 45.65 46.207 -2.999 -0.047078 -9.7964E-05 NaN 1.0715 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2881300 46303 2430 30799 30819 0.11535748579603933 TLREVSEPL 9 Unmodified _TLREVSEPL_ 0 0 0 REV__FLOT1|p.V414M|1|0.43|ENSG00000137312|chr6:30730036-30730036|C/T|missense_variant REV__FLOT1|p.V414M|1|0.43|ENSG00000137312|chr6:30730036-30730036|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2805786132812 2 522.290214 1042.56587 0.19947 0.00010418 1.7631 0.00092085 1.9626 0.001025 522.7931915412429 133.99 0.37744 133.99 133.77 134.14 0 15 10 2 0 0 0 0.71527 1 26496 26496 13.906 0 1 2428400 + 46304 16386 30800 30820 45561 45561 0.04629421752088092 TLRGHITRL 9 Unmodified _TLRGHITRL_ 0 0 0 ENST00000361671.9_1_9:88636889-88636997:+|nuORF ENST00000361671.9_1_9:88636889-88636997:+|nuORF ENST00000361671.9_1_9:88636889-88636997:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2715454101562 2 533.827632 1065.64071 0.34444 0.00018387 -0.71664 -0.00038256 -0.3722 -0.00019869 533.8276977324481 143.04 0.2113 138.15 138.06 138.27 -4.8982 6 5 2 0 0 0 0.79204 1 27614 27614 3.9444 0 1 1424200 46305 9030 30801 30821 45562 45562 0.11051649073965564 TLRINSDP 8 Unmodified _TLRINSDP_ 0 0 0 REV__ENSG00000129988|ENST00000217407|LBP REV__ENSG00000129988|ENST00000217407|LBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23028564453125 2 458.248349 914.482145 0.27115 0.00012425 0.60116 0.00027548 0.87231 0.00039973 458.24830280608495 32.449 0.66179 32.449 32.188 32.85 0 28 18 2 0 0 0 1.0147 1 5949 5949 0.6015 0 1 1518300 + 46306 15978 30802 30822 45563 45563 0.02148310375048368 TLRKKKKGK 9 Unmodified _TLRKKKKGK_ 0 0 0 nc|ENSG00000157119|Q2TBA0-2|KLHL40;ENSG00000157119|ENST00000287777|KLHL40 nc|ENSG00000157119|Q2TBA0-2|KLHL40 nc|ENSG00000157119|Q2TBA0-2|KLHL40 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7890014648438 2 543.877125 1085.7397 NaN NaN NaN NaN NaN NaN NaN 143.61 1 138.95 138.45 139.45 -4.656 0 0 0 0.19656 1 28408 28408 0.20686 0.20348 1 46307 5119 30803 30823 45564 45564 0.20025672038900666 TLRKKKKGK 9 Unmodified _TLRKKKKGK_ 0 0 0 nc|ENSG00000157119|Q2TBA0-2|KLHL40;ENSG00000157119|ENST00000287777|KLHL40 nc|ENSG00000157119|Q2TBA0-2|KLHL40 nc|ENSG00000157119|Q2TBA0-2|KLHL40 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7890014648438 2 543.877125 1085.7397 NaN NaN NaN NaN NaN NaN NaN 143.62 1 138.97 138.47 139.47 -4.656 0 0 0 0.23508 1 28411 28411 1.8442 0 1 46308 5119 30803 30823 45565 45565 0.20025672038900666 TLRLPSYMV 9 Unmodified _TLRLPSYMV_ 0 0 0 nc|ENSG00000241644|O95050-2|INMT;ENSG00000241644|ENST00000013222|INMT nc|ENSG00000241644|O95050-2|INMT nc|ENSG00000241644|O95050-2|INMT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015686035156 3 360.535444 1078.5845 -0.29265 -0.00010551 0.27151 9.7888E-05 -0.021145 -7.6235E-06 360.5355117912817 91.968 1.1696 88.043 87.098 88.267 -3.9251 38 14 3 0 0 0 0.79297 1 17897 17897 1.0715 0 1 4971700 46309 7854 30804 30824 45566 45566 0.04835260122285945 TLRQEHRK 8 Unmodified _TLRQEHRK_ 0 0 0 ENSG00000047662|ENST00000265018|FAM184B ENSG00000047662|ENST00000265018|FAM184B ENSG00000047662|ENST00000265018|FAM184B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.09600830078125 3 356.540468 1066.59957 -2.294 -0.00081789 -1.1194 -0.0003991 -3.4133 -0.001217 356.5399520669665 13.942 0.61043 12.731 12.208 12.819 -1.2106 26 17 2 0 0 0 1.0281 1 1702 1702 0.45834 0 1 316720 46310 1223 30805 30825 45567 45567 0.06893888034505835 TLRQFGSSW 9 Unmodified _TLRQFGSSW_ 0 0 0 ENST00000443026.6_1_7:20699166-20699316:+|nuORF ENST00000443026.6_1_7:20699166-20699316:+|nuORF ENST00000443026.6_1_7:20699166-20699316:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2713623046875 2 541.274898 1080.53524 0.24385 0.00013199 -1.1651 -0.00063066 -0.92128 -0.00049867 541.274074671899 98.641 0.6556 94.509 94.056 94.712 -4.1326 59 18 4 0 0 0 0.55979 1 19302 19302 15.847 3.3156 1 18499000 46311 9908 30806 30826 45568 45568 -0.0018031184229130304 TLRRKYTR 8 Unmodified _TLRRKYTR_ 0 0 0 ENST00000398497.2_1_21:43422514-43422670:-|nuORF ENST00000398497.2_1_21:43422514-43422670:-|nuORF ENST00000398497.2_1_21:43422514-43422670:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.780517578125 2 547.333082 1092.65161 0.53122 0.00029075 -0.43894 -0.00024024 0.09228 5.0508E-05 547.3327464227317 29.348 0.41469 27.274 27.033 27.448 -2.0743 17 11 2 0 0 0 1.0191 1 4943 4943 4.756 1.1595 1 568160 46312 9483 30807 30827 45569 45569 0.10899051448268438 TLRRRLLAP 9 Unmodified _TLRRRLLAP_ 0 0 0 ENSG00000169905|ENST00000609928|TOR1AIP2 ENSG00000169905|ENST00000609928|TOR1AIP2 ENSG00000169905|ENST00000609928|TOR1AIP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7879638671875 2 548.359099 1094.70365 0.33128 0.00018166 -1.7839 -0.0009782 -1.4526 -0.00079654 548.8577802676593 145.13 0.16814 145.13 145 145.17 0 5 4 2 0 0 0 0.61568 1 28990 28990 0 0 1 1128300 46313 6020 30808 30828 45570 45570 0.16008214862040404 TLRWQRWQRRR 11 Unmodified _TLRWQRWQRRR_ 0 0 0 TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant;TMC8|p.L494Pfs*7|1|0.38|ENSG00000167895|chr17:78138130-78138131|-/C|frameshift_variant;ENSG00000167895|ENST00000318430|TMC8 TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.786865234375 3 547.981824 1640.92364 NaN NaN NaN NaN NaN NaN NaN 66.173 1 66.173 65.673 66.673 0 0 0 0 0.23698 1 12775 12775 0 0 1 46314 5858 30809 30829 45571 45571 0.1288183352228316 TLRWQRWQRRR 11 Unmodified _TLRWQRWQRRR_ 0 0 0 TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant;TMC8|p.L494Pfs*7|1|0.38|ENSG00000167895|chr17:78138130-78138131|-/C|frameshift_variant;ENSG00000167895|ENST00000318430|TMC8 TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.768310546875 3 547.981824 1640.92364 NaN NaN NaN NaN NaN NaN NaN 66.19 1 66.19 65.69 66.69 0 0 0 0 0.23698 1 12780 12780 0 0 1 46315 5858 30809 30829 45572 45572 0.1288183352228316 TLRWQRWQRRR 11 Unmodified _TLRWQRWQRRR_ 0 0 0 TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant;TMC8|p.L494Pfs*7|1|0.38|ENSG00000167895|chr17:78138130-78138131|-/C|frameshift_variant;ENSG00000167895|ENST00000318430|TMC8 TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7828979492188 3 547.981824 1640.92364 NaN NaN NaN NaN NaN NaN NaN 113.82 1 109.26 108.76 109.76 -4.555 0 0 0 0.22632 1 21850 21850 0.0072825 0.0072825 1 46316 5858 30809 30829 45573 45573 0.1288183352228316 TLSDLLAGAAY 11 Unmodified _TLSDLLAGAAY_ 0 0 0 nc|ENSG00000180739|Q9H228-2|S1PR5;ENSG00000180739|ENST00000333430|S1PR5 nc|ENSG00000180739|Q9H228-2|S1PR5 nc|ENSG00000180739|Q9H228-2|S1PR5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7687377929688 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 101.64 1 101.64 101.14 102.14 0 0 0 0 0.20718 1 19954 19954 17.113 1.2657 1 46317 6691 30810 30830 45574 45574 0.022500020322468117 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2582397460938 2 540.308406 1078.60226 0.28971 0.00015653 -0.048237 -2.6063E-05 0.24147 0.00013047 540.3083306093672 156.48 1.0305 156.48 156.07 157.1 0 97 29 4 0 0 0 0.043105 1 31352 31352 74.2 30.427 1 107980000 46318 8001 30811 30831 45575 45575 0.06610298648797652 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.272705078125 2 540.308406 1078.60226 0.37996 0.00020529 -0.27534 -0.00014877 0.10461 5.6523E-05 540.3081975500783 161.2 1.3714 156.4 155.93 157.3 -4.7952 134 38 6 0 0 0 0.028327 4 32105 32091;32105;32128;32147 83.429 39.57 1 124330000 46319 8001 30811 30831 45576;45577;45578;45579 45577 0.06610298648797652 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2725830078125 2 540.308406 1078.60226 0.29074 0.00015709 0.012317 6.655E-06 0.30305 0.00016374 540.3083302607614 161.96 0.95721 156.81 156.31 157.26 -5.1438 92 27 4 0 0 0 0.043105 3 31429 31429;31448;31480 74.2 36.226 1 79833000 46320 8001 30811 30831 45580;45581;45582 45580 0.06610298648797652 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.28466796875 2 540.308406 1078.60226 0.53903 0.00029124 -0.26764 -0.00014461 0.27139 0.00014664 540.3082108680167 161.92 1.0734 156.73 156.16 157.23 -5.1878 102 30 5 0 0 0 0.028327 2 31459 31368;31459 83.429 39.656 1 79875000 46321 8001 30811 30831 45583;45584 45584 0.06610298648797652 TLSDSEDG 8 Unmodified _TLSDSEDG_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 412.16986083984375 2 412.16943 822.324307 NaN NaN NaN NaN NaN NaN NaN 56.774 1 53.585 53.085 54.085 -3.1895 0 0 0 0.23366 1 10531 10531 0.0082765 0 1 + 46322 24099 30812 30832 45585 45585 -0.0939623367484046 TLSEKPTE 8 Unmodified _TLSEKPTE_ 0 0 0 REV__nc|ENSG00000105486|P18858-2|LIG1 REV__nc|ENSG00000105486|P18858-2|LIG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.15972900390625 3 302.158919 903.454927 NaN NaN NaN NaN NaN NaN NaN 69.06 1 65.669 65.169 66.169 -3.3903 0 0 0 0.21486 1 13051 13051 1.4819 1.0812 1 + 46323 14994 30813 30833 45586 45586 -0.0006621795598675817 TLSESTHKY 9 Unmodified _TLSESTHKY_ 0 0 0 ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2;ENST00000478710.1_1_1:230825798-230827388:+|nuORF ENSG00000135775|ENST00000366669|COG2 ENSG00000135775|ENST00000366669|COG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2853393554688 2 533.264196 1064.51384 0.24626 0.00013132 -0.47714 -0.00025444 -0.23088 -0.00012312 533.2640824827868 83.597 0.49491 83.597 83.361 83.856 0 18 13 2 0 0 0 0.48707 1 16255 16255 20.415 1.0526 1 2571600 46324 3951 30814 30834 45587 45587 -0.015837416616705013 TLSESTHKY 9 Unmodified _TLSESTHKY_ 0 0 0 ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2;ENST00000478710.1_1_1:230825798-230827388:+|nuORF ENSG00000135775|ENST00000366669|COG2 ENSG00000135775|ENST00000366669|COG2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2650146484375 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 18.332 1 18.332 17.832 18.832 0 0 0 0 0.21078 1 2944 2944 20.415 2.2796 1 46325 3951 30814 30834 45588 45588 -0.015837416616705013 TLSESTHKY 9 Unmodified _TLSESTHKY_ 0 0 0 ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2;ENST00000478710.1_1_1:230825798-230827388:+|nuORF ENSG00000135775|ENST00000366669|COG2 ENSG00000135775|ENST00000366669|COG2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2649536132812 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 19.706 1 18.38 17.88 18.88 -1.3251 0 0 0 0.14378 1 3020 3020 31.268 8.5321 1 46326 3951 30814 30834 45589 45589 -0.015837416616705013 TLSFLGQY 8 Unmodified _TLSFLGQY_ 0 0 0 ENST00000412830.7_1_12:108098493-108102716:+|nuORF ENST00000412830.7_1_12:108098493-108102716:+|nuORF ENST00000412830.7_1_12:108098493-108102716:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 94.305 1 94.305 93.805 94.805 0 0 0 0 0.23626 1 18466 18466 0.62683 0 1 46327 9587 30815 30835 45590 45590 0.003546936318684857 TLSFLGQY 8 Unmodified _TLSFLGQY_ 0 0 0 ENST00000412830.7_1_12:108098493-108102716:+|nuORF ENST00000412830.7_1_12:108098493-108102716:+|nuORF ENST00000412830.7_1_12:108098493-108102716:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 86.84 1 83.113 82.613 83.613 -3.727 0 0 0 0.23584 1 16979 16979 0.62683 0 1 46328 9587 30815 30835 45591 45591 0.003546936318684857 TLSFLGQY 8 Unmodified _TLSFLGQY_ 0 0 0 ENST00000412830.7_1_12:108098493-108102716:+|nuORF ENST00000412830.7_1_12:108098493-108102716:+|nuORF ENST00000412830.7_1_12:108098493-108102716:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1652526855469 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 95.957 1 91.766 91.266 92.266 -4.1911 0 0 0 0.21486 1 18318 18318 1.6526 0 1 46329 9587 30815 30835 45592 45592 0.003546936318684857 TLSFLGQY 8 Unmodified _TLSFLGQY_ 0 0 0 ENST00000412830.7_1_12:108098493-108102716:+|nuORF ENST00000412830.7_1_12:108098493-108102716:+|nuORF ENST00000412830.7_1_12:108098493-108102716:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1700439453125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 98.633 1 94.364 93.864 94.864 -4.2692 0 0 0 0.21486 1 18857 18857 3.9444 0 1 46330 9587 30815 30835 45593 45593 0.003546936318684857 TLSFLGQY 8 Unmodified _TLSFLGQY_ 0 0 0 ENST00000412830.7_1_12:108098493-108102716:+|nuORF ENST00000412830.7_1_12:108098493-108102716:+|nuORF ENST00000412830.7_1_12:108098493-108102716:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 175.53 1 170.64 170.14 171.14 -4.8916 0 0 0 0.2386 1 34984 34984 0.0082765 0 1 46331 9587 30815 30835 45594 45594 0.003546936318684857 TLSGHSQEV 9 Unmodified _TLSGHSQEV_ 0 0 0 ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20 ENST00000488829.1_1_9:89626569-89628063:+|nuORF ENST00000488829.1_1_9:89626569-89628063:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7428894042969 2 479.235439 956.456324 -0.072 -3.4505E-05 0.11161 5.3487E-05 0.03961 1.8982E-05 479.2354627726514 20.66 0.73651 20.66 20.387 21.124 0 63 20 4 0 0 0 0.021579 1 3424 3424 99.755 33.299 1 23173000 46332 2982 30816 30836 45595 45595 -0.023645838672223363 TLSGHSQEV 9 Unmodified _TLSGHSQEV_ 0 0 0 ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20 ENST00000488829.1_1_9:89626569-89628063:+|nuORF ENST00000488829.1_1_9:89626569-89628063:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72113037109375 2 479.235439 956.456324 0.59325 0.00028431 -0.56876 -0.00027257 0.02449 1.1736E-05 479.2351367840003 22.085 0.63103 20.61 20.34 20.971 -1.4742 51 17 4 0 0 0 0.26627 1 3785 3785 53.404 24.917 1 14082000 46333 2982 30816 30836 45596 45596 -0.023645838672223363 TLSGHSQEV 9 Unmodified _TLSGHSQEV_ 0 0 0 ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20 ENST00000488829.1_1_9:89626569-89628063:+|nuORF ENST00000488829.1_1_9:89626569-89628063:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.728271484375 2 479.235439 956.456324 -0.14067 -6.7414E-05 0.23522 0.00011273 0.094555 4.5314E-05 479.2354968642705 21.994 0.59587 20.551 20.29 20.886 -1.4432 53 16 4 0 0 0 0.021579 1 3497 3497 110.67 34.914 1 13995000 46334 2982 30816 30836 45597 45597 -0.023645838672223363 TLSGHSQEV 9 Unmodified _TLSGHSQEV_ 0 0 0 ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20 ENST00000488829.1_1_9:89626569-89628063:+|nuORF ENST00000488829.1_1_9:89626569-89628063:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7224426269531 2 479.235439 956.456324 -0.60801 -0.00029138 0.53689 0.0002573 -0.071121 -3.4083E-05 479.2356314086048 22.297 0.59269 20.508 20.259 20.851 -1.7886 55 16 4 0 0 0 0.4398 1 3504 3504 41.956 10.687 1 8057600 46335 2982 30816 30836 45598 45598 -0.023645838672223363 TLSGLNYVI 9 Unmodified _TLSGLNYVI_ 0 0 0 ENST00000591360.1_1_18:56202681-56203395:+|nuORF ENST00000591360.1_1_18:56202681-56203395:+|nuORF ENST00000591360.1_1_18:56202681-56203395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27593994140625 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 145.77 1 145.77 145.27 146.27 0 0 0 0 0.23508 1 29139 29139 11.64 0.81637 1 46336 11620 30817 30837 45599 45599 0.04846938211710494 TLSIITKRRD 10 Unmodified _TLSIITKRRD_ 0 0 0 REV__tr|U7STM8|U7STM8_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01402PE=4SV=1 REV__tr|U7STM8|U7STM8_FUSNUHTHmarR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01402PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2899169921875 2 601.864412 1201.71427 NaN NaN NaN NaN NaN NaN NaN 169.54 1 169.54 169.04 170.04 0 0 0 0 2.8426 1 34804 34804 0.20733 0.19406 1 + 46337 25114 30818 30838 45600 45600 0.12148152725785621 TLSIRLLW 8 Unmodified _TLSIRLLW_ 0 0 0 REV__ENST00000377073.3_1_X:47270082-47271807:+|nuORF REV__ENST00000377073.3_1_X:47270082-47271807:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.5433654785156 3 334.542927 1000.60695 NaN NaN NaN NaN NaN NaN NaN 66.465 1 63.139 62.639 63.639 -3.3268 0 0 0 0.23837 1 12513 12513 0.12286 0 1 + 46338 21088 30819 30839 45601 45601 0.10667227582223404 TLSLHLYPT 9 Unmodified _TLSLHLYPT_ 0 0 0 REV__ENST00000429243.6_1_12:53839881-53840088:+|nuORF REV__ENST00000429243.6_1_12:53839881-53840088:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.272216796875 2 522.78985 1043.56515 -0.24791 -0.00012961 0.13745 7.1856E-05 -0.11046 -5.775E-05 522.7900528672076 89.179 0.13699 85.134 85.034 85.171 -4.0443 5 3 2 0 0 0 0.85111 1 16993 16993 6.7232 5.5298 1 630060 + 46339 21598 30820 30840 45602 45602 0.04510627103036313 TLSLKATEV 9 Unmodified _TLSLKATEV_ 0 0 0 ENST00000427814.5_1_7:27870244-27870370:-|nuORF ENST00000427814.5_1_7:27870244-27870370:-|nuORF ENST00000427814.5_1_7:27870244-27870370:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7831115722656 2 481.281857 960.549162 -0.023724 -1.1418E-05 -0.24255 -0.00011674 -0.26627 -0.00012815 481.28166765028675 79.91 0.92024 76.105 75.646 76.566 -3.8048 59 25 3 0 0 0 0.2219 1 15151 15151 36.127 0 1 5163900 46340 9746 30821 30841 45603 45603 0.06730920866129964 TLSLLKIKK 9 Unmodified _TLSLLKIKK_ 0 0 0 ENST00000344862.9_1_12:44119226-44119532:-|nuORF ENST00000344862.9_1_12:44119226-44119532:-|nuORF ENST00000344862.9_1_12:44119226-44119532:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2685546875 2 522.362985 1042.71142 NaN NaN NaN NaN NaN NaN NaN 160.1 1 154.87 154.37 155.37 -5.2299 0 0 0 0.19652 1 31080 31080 0.073264 0 1 46341 8899 30822 30842 45604 45604 0.19176929338937043 TLSLTEFRL 9 Unmodified _TLSLTEFRL_ 0 0 0 REV__ENST00000412364.2_1_3:197024222-197024414:-|nuORF REV__ENST00000412364.2_1_3:197024222-197024414:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.275146484375 2 540.308406 1078.60226 0.29074 0.00015709 0.012317 6.655E-06 0.30305 0.00016374 540.3083302607614 161.96 0.95721 156.81 156.31 157.26 -5.1438 92 27 4 0 0 0 0.54076 1 31364 31364 17.113 0 1 79833000 + 46342 21433 30823 30843 45605 45605 0.0661029864882039 TLSPQPHSP 9 Unmodified _TLSPQPHSP_ 0 0 0 ENSG00000006283|ENST00000359106|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;CACNA1G|p.P2298Afs*13|1|0.4|ENSG00000006283|chr17:50626502-50626503|-/G|frameshift_variant;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;CACNA1G|p.E2317Rfs*47|1|0.22|ENSG00000006283|chr17:50626559-50626559|C/-|frameshift_variant;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G ENSG00000006283|ENST00000359106|CACNA1G ENSG00000006283|ENST00000359106|CACNA1G MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7810363769531 2 482.248349 962.482145 -0.28919 -0.00013946 -0.34816 -0.0001679 -0.63735 -0.00030736 482.24830217679397 68.891 0.42397 68.891 68.612 69.036 0 14 11 2 0 0 0 0.74655 1 13308 13308 10.824 6.0679 1 1394600 46343 361 30824 30844 45606 45606 -0.0005968962494762309 TLSPVPESQ 9 Unmodified _TLSPVPESQ_ 0 0 0 REV__nc|ENSG00000124920|Q9Y2G1-2|MYRF REV__nc|ENSG00000124920|Q9Y2G1-2|MYRF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72479248046875 2 479.248015 956.481476 -0.021564 -1.0335E-05 -0.74495 -0.00035702 -0.76652 -0.00036735 479.24769164772573 76.189 1.1278 72.774 72.017 73.145 -3.4151 55 31 3 0 0 0 0.36689 1 14902 14902 26.884 5.137 1 11625000 + 46344 24023 30825 30845 45607 45607 0.001494709353437429 TLSPVPESQ 9 Unmodified _TLSPVPESQ_ 0 0 0 REV__nc|ENSG00000124920|Q9Y2G1-2|MYRF REV__nc|ENSG00000124920|Q9Y2G1-2|MYRF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74273681640625 2 479.248015 956.481476 0.075392 3.6131E-05 -0.84358 -0.00040428 -0.76819 -0.00036815 479.2476678737769 76.669 1.7636 72.936 72.057 73.821 -3.7337 75 50 3 0 0 0 0.36689 1 14544 14544 26.884 7.6267 1 6867300 + 46345 24023 30825 30845 45608 45608 0.001494709353437429 TLSQLRQLQ 9 Unmodified _TLSQLRQLQ_ 0 0 0 MIB1-MYO5B|1|fusion;ENSG00000101752|ENST00000261537|MIB1 MIB1-MYO5B|1|fusion MIB1-MYO5B|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7939453125 2 543.81693 1085.61931 NaN NaN NaN NaN NaN NaN NaN 147.5 1 142.35 141.85 142.85 -5.1557 0 0 0 0.23508 1 28543 28543 11.495 0.6952 1 46346 12146 30826 30846 45609 45609 0.07992219254606425 TLSQSPTFY 9 Unmodified _TLSQSPTFY_ 0 0 0 ENST00000343105.9_1_2:191381046-191390059:-|nuORF;nc|ENSG00000189362|A6NFY4-2|NEMP2;ENSG00000189362|ENST00000409150|NEMP2 ENST00000343105.9_1_2:191381046-191390059:-|nuORF ENST00000343105.9_1_2:191381046-191390059:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.263916015625 2 522.25584 1042.49713 -0.56933 -0.00029733 0.64855 0.00033871 0.079225 4.1376E-05 522.2561913159085 153.56 0.76666 148.3 147.95 148.72 -5.2669 32 21 2 0 0 0 0.2213 1 29711 29711 4.7159 0 1 2600200 46347 7226 30827 30847 45610 45610 -0.022422425476179342 TLSRPVTGV 9 Unmodified _TLSRPVTGV_ 0 0 0 REV__nc|ENSG00000151208|Q8TDM6-2|DLG5 REV__nc|ENSG00000151208|Q8TDM6-2|DLG5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25628662109375 2 465.274367 928.53418 NaN NaN NaN NaN NaN NaN NaN 92.423 1 88.329 87.829 88.829 -4.0946 0 0 0 0.23508 1 17607 17607 11.64 3.047 1 + 46348 13692 30828 30848 45611 45611 0.06705473788815652 TLSRPVTGV 9 Unmodified _TLSRPVTGV_ 0 0 0 REV__nc|ENSG00000151208|Q8TDM6-2|DLG5 REV__nc|ENSG00000151208|Q8TDM6-2|DLG5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2557373046875 2 465.274367 928.53418 NaN NaN NaN NaN NaN NaN NaN 92.679 1 88.535 88.035 89.035 -4.1435 0 0 0 0.23508 1 17658 17658 11.64 3.7301 1 + 46349 13692 30828 30848 45612 45612 0.06705473788815652 TLSRPVTGV 9 Unmodified _TLSRPVTGV_ 0 0 0 REV__nc|ENSG00000151208|Q8TDM6-2|DLG5 REV__nc|ENSG00000151208|Q8TDM6-2|DLG5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2569274902344 2 465.274367 928.53418 NaN NaN NaN NaN NaN NaN NaN 92.434 1 88.625 88.125 89.125 -3.8083 0 0 0 0.22251 1 17712 17712 16.942 1.0951 1 + 46350 13692 30828 30848 45613 45613 0.06705473788815652 TLSSDREYA 9 Unmodified _TLSSDREYA_ 0 0 0 REV__ENSG00000155858|ENST00000286307|LSM11 REV__ENSG00000155858|ENST00000286307|LSM11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2822875976562 2 521.246003 1040.47745 -0.46628 -0.00024305 1.1887 0.00061961 0.72242 0.00037656 521.7475914082097 66.088 0.37875 62.613 62.474 62.853 -3.475 22 10 3 0 0 0 0.67531 1 12393 12393 7.9102 2.1783 1 1028900 + 46351 17229 30829 30849 45614 45614 -0.04116618558373375 TLSSDREYA 9 Unmodified _TLSSDREYA_ 0 0 0 REV__ENSG00000155858|ENST00000286307|LSM11 REV__ENSG00000155858|ENST00000286307|LSM11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 521.246003 1040.47745 -0.10539 -5.4935E-05 4.2052 0.0021919 4.0998 0.002137 521.2483982505219 62.499 0.41868 62.499 62.347 62.766 0 -0.090241 0.0018691 NaN 7.9102 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1182300 + 46352 17229 30829 30849 -0.04116618558373375 TLSSDREYA 9 Unmodified _TLSSDREYA_ 0 0 0 REV__ENSG00000155858|ENST00000286307|LSM11 REV__ENSG00000155858|ENST00000286307|LSM11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.246003 1040.47745 -0.22979 -0.00011978 1.2112 0.00063134 0.98142 0.00051156 521.248253007427 65.702 0.43052 62.655 62.446 62.876 -3.047 0.065504 -0.0012521 NaN 7.9102 20 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1450300 + 46353 17229 30829 30849 -0.04116618558373375 TLSSDREYA 9 Unmodified _TLSSDREYA_ 0 0 0 REV__ENSG00000155858|ENST00000286307|LSM11 REV__ENSG00000155858|ENST00000286307|LSM11 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 521.246003 1040.47745 -0.46628 -0.00024305 1.1887 0.00061961 0.72242 0.00037656 521.7475914082097 66.088 0.37875 62.613 62.474 62.853 -3.475 0.023762 -0.0012756 NaN 7.9102 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1028900 + 46354 17229 30829 30849 -0.04116618558373375 TLSSDREYA 9 Unmodified _TLSSDREYA_ 0 0 0 REV__ENSG00000155858|ENST00000286307|LSM11 REV__ENSG00000155858|ENST00000286307|LSM11 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.246003 1040.47745 0.35807 0.00018664 0.43672 0.00022764 0.79479 0.00041428 521.247913544376 65.874 0.48847 62.591 62.406 62.894 -3.2832 0.00097562 -0.0020595 NaN 7.9102 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1425400 + 46355 17229 30829 30849 -0.04116618558373375 TLSSFAFF 8 Unmodified _TLSSFAFF_ 0 0 0 ENST00000519705.1_1_8:43052051-43054709:+|nuORF;ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT ENST00000519705.1_1_8:43052051-43054709:+|nuORF ENST00000519705.1_1_8:43052051-43054709:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23187255859375 2 460.231636 918.448719 NaN NaN NaN NaN NaN NaN NaN 72.265 1 72.265 71.765 72.765 0 0 0 0 0.21486 1 14008 14008 9.3474 0 1 46356 5596 30830 30850 45615 45615 -0.013766913968538574 TLSSFDPNY 9 Unmodified _TLSSFDPNY_ 0 0 0 REV__ENSG00000217236|ENST00000394967|SP9 REV__ENSG00000217236|ENST00000394967|SP9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2804565429688 2 522.237647 1042.46074 -0.4992 -0.0002607 0.86021 0.00044923 0.36102 0.00018854 522.2380546994033 111.57 0.48768 107.14 106.89 107.38 -4.4231 23 13 2 0 0 0 0.76271 1 22012 22012 10.074 0 1 1794900 + 46357 19701 30831 30851 45616 45616 -0.05879119444330172 TLSSGVNLPA 10 Unmodified _TLSSGVNLPA_ 0 0 0 POLQ|p.Y2285Ifs*7|1|0.44|ENSG00000051341|chr3:121467633-121467633|A/-|frameshift_variant;POLQ|p.H2496Tfs*59|1|0.11|ENSG00000051341|chr3:121436179-121436179|G/-|frameshift_variant;ENSG00000051341|ENST00000264233|POLQ;POLQ|p.K1535Nfs*4|1|0.38|ENSG00000051341|chr3:121488326-121488326|T/-|frameshift_variant;POLQ|p.R455C|1|0.22|ENSG00000051341|chr3:121519976-121519976|G/A|missense_variant;POLQ|p.F670Sfs*11|1|0.33|ENSG00000051341|chr3:121498621-121498621|A/-|frameshift_variant;POLQ|p.K1304Lfs*11|1|0.06|ENSG00000051341|chr3:121489022-121489023|-/GAAGGAGT|frameshift_variant;POLQ|p.L1430*|2|0.34|ENSG00000051341|chr3:121488642-121488642|A/-|frameshift_variant;POLQ|p.T546Sfs*41|1|0.05|ENSG00000051341|chr3:121510219-121510220|-/GGCTACTAGA|frameshift_variant POLQ|p.Y2285Ifs*7|1|0.44|ENSG00000051341|chr3:121467633-121467633|A/-|frameshift_variant;POLQ|p.T546Sfs*41|1|0.05|ENSG00000051341|chr3:121510219-121510220|-/GGCTACTAGA|frameshift_variant POLQ|p.Y2285Ifs*7|1|0.44|ENSG00000051341|chr3:121467633-121467633|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7691650390625 2 479.763832 957.513111 0.047665 2.2868E-05 0.11291 5.4169E-05 0.16057 7.7037E-05 479.7639539988803 50.252 0.88043 47.209 46.719 47.6 -3.0429 118 25 6 0 0 0 0.5575 1 9227 9227 21.537 3.3906 1 227000000 46358 1248;12810 30832 30852 45617 45617 0.03265463689274384 TLSSITQGV 9 Unmodified _TLSSITQGV_ 0 0 0 ENSG00000160741|ENST00000368633|CRTC2 ENSG00000160741|ENST00000368633|CRTC2 ENSG00000160741|ENST00000368633|CRTC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7525329589844 2 453.250557 904.486562 -0.12201 -5.5301E-05 -0.064637 -2.9297E-05 -0.18665 -8.4598E-05 453.250376152587 92.658 0.58802 88.733 88.446 89.034 -3.9251 24 16 2 0 0 0 0.11483 3 18173 18125;18173;18177 30.225 9.1062 1 886400 46359 5266 30833 30853 45618;45619;45620 45619 0.030497747979552514 TLSSITQGV 9 Unmodified _TLSSITQGV_ 0 0 0 ENSG00000160741|ENST00000368633|CRTC2 ENSG00000160741|ENST00000368633|CRTC2 ENSG00000160741|ENST00000368633|CRTC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75189208984375 2 453.250557 904.486562 0.19751 8.9519E-05 -0.17844 -8.088E-05 0.019062 8.6397E-06 453.2502835671052 93.021 0.35719 88.878 88.623 88.98 -4.1435 15 9 2 0 0 0 0.10537 1 17710 17710 24.882 16.726 1 959020 46360 5266 30833 30853 45621 45621 0.030497747979552514 TLSSPWLV 8 Unmodified _TLSSPWLV_ 0 0 0 REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 451.7525329589844 2 451.752736 901.490919 -0.039611 -1.7895E-05 0.31564 0.00014259 0.27603 0.0001247 451.75273327551906 127.81 0.67 123.19 122.81 123.48 -4.6172 33 18 2 0 0 0 8448 1 25133 25133 6.2058 6.0829 1 1787700 + 46361 22274 30834 30854 45622 45622 0.0362328401151899 TLSSPWLV 8 Unmodified _TLSSPWLV_ 0 0 0 REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 451.752736 901.490919 0.23749 0.00010729 0.10184 4.6008E-05 0.33933 0.00015329 451.7526365974648 123.15 0.6749 123.15 122.71 123.38 0 -0.04053 -1.728E-05 NaN 6.2058 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2501600 + 46362 22274 30834 30854 0.0362328401151899 TLSSPWLV 8 Unmodified _TLSSPWLV_ 0 0 0 REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 451.752736 901.490919 -0.039611 -1.7895E-05 0.31564 0.00014259 0.27603 0.0001247 451.75273327551906 127.81 0.67 123.19 122.81 123.48 -4.6172 -0.0010452 0.00017588 NaN 6.2058 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1787700 + 46363 22274 30834 30854 0.0362328401151899 TLSSPWLV 8 Unmodified _TLSSPWLV_ 0 0 0 REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 451.752736 901.490919 0.12048 5.4426E-05 -0.063883 -2.8859E-05 0.056595 2.5567E-05 451.7525887333644 128.01 0.95087 123.2 122.71 123.66 -4.817 0.0059187 -0.00016701 NaN 6.2058 34 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1808400 + 46364 22274 30834 30854 0.0362328401151899 TLSSPWLV 8 Unmodified _TLSSPWLV_ 0 0 0 REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 451.752736 901.490919 0.094559 4.2717E-05 0.092285 4.169E-05 0.18684 8.4407E-05 451.75275977779717 127.93 0.5261 123.23 122.93 123.45 -4.6998 0.035656 -2.5916E-05 NaN 6.2058 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2201200 + 46365 22274 30834 30854 0.0362328401151899 TLSSSKNL 8 Unmodified _TLSSSKNL_ 0 0 0 nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A nc|ENSG00000099290|Q641Q2-2|WASHC2A nc|ENSG00000099290|Q641Q2-2|WASHC2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23797607421875 2 425.23745 848.460347 NaN NaN NaN NaN NaN NaN NaN 114.07 1 109.76 109.26 110.26 -4.3136 0 0 0 0.21486 1 21971 21971 9.3474 0 1 46366 1884 30835 30855 45623 45623 0.030055056264700397 TLSSVSSV 8 Unmodified _TLSSVSSV_ 0 0 0 REV__nc|ENSG00000168333|Q8WWR9-2|PPDPFL REV__nc|ENSG00000168333|Q8WWR9-2|PPDPFL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.2125549316406 2 390.210901 778.407249 NaN NaN NaN NaN NaN NaN NaN 88.158 1 84.408 83.908 84.908 -3.7501 0 0 0 0.23899 1 16872 16872 1.3295 0 1 + 46367 18015 30836 30856 45624 45624 0.009181278438290974 TLSTSVMQI 9 Unmodified _TLSTSVMQI_ 0 0 0 IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant;ENSG00000152580|ENST00000282466|IGSF10;IGSF10|p.N1400Tfs*18|1|0.29|ENSG00000152580|chr3:151445782-151445782|T/-|frameshift_variant;IGSF10|p.K1527Rfs*29|1|0.18|ENSG00000152580|chr3:151445403-151445403|G/-|frameshift_variant IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26165771484375 2 490.260068 978.505582 NaN NaN NaN NaN NaN NaN NaN 154.31 1 149.05 148.55 149.55 -5.2671 0 0 0 0.19674 1 29921 29921 0.40827 0.2854 1 46368 4932 30837 30857 45625 45625 0.015469880973569161 TLSTSVMQI 9 Unmodified _TLSTSVMQI_ 0 0 0 IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant;ENSG00000152580|ENST00000282466|IGSF10;IGSF10|p.N1400Tfs*18|1|0.29|ENSG00000152580|chr3:151445782-151445782|T/-|frameshift_variant;IGSF10|p.K1527Rfs*29|1|0.18|ENSG00000152580|chr3:151445403-151445403|G/-|frameshift_variant IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2590026855469 2 490.260068 978.505582 NaN NaN NaN NaN NaN NaN NaN 133.03 1 128.23 127.73 128.73 -4.799 0 0 0 0.19704 1 25603 25603 0.87518 0 1 46369 4932 30837 30857 45626 45626 0.015469880973569161 TLSTVIATV 9 Unmodified _TLSTVIATV_ 0 0 0 ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.28082275390625 2 452.771126 903.527698 0.16079 7.2799E-05 0.0013763 6.2313E-07 0.16216 7.3422E-05 452.7710952743498 134.25 0.76775 129.43 129.09 129.86 -4.8175 36 21 2 0 0 0 1.2995E-06 1 25868 25868 36.81 14.19 1 3546700 46370 2635 30838 30858 45627 45627 0.07207535837437717 TLSTVIATV 9 Unmodified _TLSTVIATV_ 0 0 0 ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 452.771126 903.527698 -0.00035772 -1.6197E-07 0.18943 8.5767E-05 0.18907 8.5605E-05 452.77118790083296 134.23 0.69156 129.36 129.06 129.75 -4.8726 0.019226 4.7126E-05 NaN 36.81 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3533500 46371 2635 30838 30858 0.07207535837437717 TLSVGALGPD 10 Unmodified _TLSVGALGPD_ 0 0 0 REV__TNFSF9|p.G123Afs*2|1|0.49|ENSG00000125657|chr19:6534664-6534664|G/-|frameshift_variant REV__TNFSF9|p.G123Afs*2|1|0.49|ENSG00000125657|chr19:6534664-6534664|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 930.49658203125 1 929.493838 928.486562 0.27795 0.00025835 0.011007 1.0231E-05 0.28896 0.00026858 929.4937425511542 77.31 0.66719 73.544 73.193 73.86 -3.7664 28 18 2 0 0 0 0.5575 1 14654 14654 21.537 3.3906 1 4690600 + 46372 15821 30839 30859 45628 45628 0.019457747979686246 TLSVGALGPD 10 Unmodified _TLSVGALGPD_ 0 0 0 REV__TNFSF9|p.G123Afs*2|1|0.49|ENSG00000125657|chr19:6534664-6534664|G/-|frameshift_variant REV__TNFSF9|p.G123Afs*2|1|0.49|ENSG00000125657|chr19:6534664-6534664|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 930.4974975585938 1 929.493838 928.486562 0.25045 0.00023279 0.24991 0.00023229 0.50036 0.00046508 929.4939288268063 77.171 0.58949 73.512 73.191 73.78 -3.6588 30 16 2 0 0 0 0.5575 1 14710 14710 21.537 1.0834 1 5008200 + 46373 15821 30839 30859 45629 45629 0.019457747979686246 TLSVMEERT 9 Unmodified _TLSVMEERT_ 0 0 0 REV__ENST00000580285.1_1_17:62529306-62530930:+|nuORF REV__ENST00000580285.1_1_17:62529306-62530930:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.263916015625 2 533.265881 1064.51721 NaN NaN NaN NaN NaN NaN NaN 19.852 1 18.456 17.956 18.956 -1.3966 0 0 0 0.20699 1 3290 3290 21.537 1.1224 1 + 46374 23235 30840 30860 45630 45630 -0.01246814879300473 TLSYSVEK 8 Unmodified _TLSYSVEK_ 0 0 0 ENSG00000132357|ENST00000254691|CARD6 ENSG00000132357|ENST00000254691|CARD6 ENSG00000132357|ENST00000254691|CARD6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2490234375 2 463.745108 925.475663 -0.17856 -8.2808E-05 0.19107 8.861E-05 0.01251 5.8015E-06 463.74510945961146 57.68 1.0879 54.786 54.2 55.288 -2.8944 93 30 4 0 0 0 8448 1 11057 11057 0.62683 0 1 20725000 46375 3720 30841 30861 45631 45631 0.009943724236677554 TLTDIEQKV 9 Unmodified _TLTDIEQKV_ 0 0 0 nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62 nc|ENSG00000116525|Q9BVG3-2|TRIM62 nc|ENSG00000116525|Q9BVG3-2|TRIM62 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6978149414062 2 523.790047 1045.56554 -0.22108 -0.0001158 -0.045125 -2.3636E-05 -0.26621 -0.00013944 523.7900690498991 85.515 0.4632 81.851 81.501 81.964 -3.6641 19 12 2 0 0 0 0.71913 1 16685 16685 15.248 0 1 1222600 46376 2931 30842 30862 45632 45632 0.04458002032242803 TLTDIEQKV 9 Unmodified _TLTDIEQKV_ 0 0 0 nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62 nc|ENSG00000116525|Q9BVG3-2|TRIM62 nc|ENSG00000116525|Q9BVG3-2|TRIM62 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6790161132812 2 523.790047 1045.56554 -0.31846 -0.00016681 0.5523 0.00028929 0.23384 0.00012248 523.7903571909895 85.741 0.44987 81.791 81.526 81.976 -3.9503 19 12 2 0 0 0 0.27332 1 16330 16330 51.63 9.7902 1 1440700 46377 2931 30842 30862 45633 45633 0.04458002032242803 TLTDIEQKV 9 Unmodified _TLTDIEQKV_ 0 0 0 nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62 nc|ENSG00000116525|Q9BVG3-2|TRIM62 nc|ENSG00000116525|Q9BVG3-2|TRIM62 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.790047 1045.56554 0.45828 0.00024004 0.0011465 6.0052E-07 0.45943 0.00024064 523.7897624877858 81.897 0.35273 81.897 81.716 82.068 0 0.050688 -0.00021835 NaN 51.63 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1087500 46378 2931 30842 30862 0.04458002032242803 TLTHSARRVGF 11 Unmodified _TLTHSARRVGF_ 0 0 0 REV__ENST00000598463.5_1_19:51301120-51301306:-|nuORF REV__ENST00000598463.5_1_19:51301120-51301306:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7682495117188 2 622.846553 1243.67855 NaN NaN NaN NaN NaN NaN NaN 97.702 1 93.604 93.104 94.104 -4.0978 0 0 0 0.23324 1 19175 19175 5.7319 0 1 + 46379 23395 30843 30863 45634 45634 0.06646115268790709 TLTKKKKLK 9 Unmodified _TLTKKKKLK_ 0 0 0 REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7884521484375 2 544.381709 1086.74886 0.33549 0.00018263 -1.7809 -0.00096951 -1.4454 -0.00078688 544.3790361594711 139.07 0.13951 139.07 138.95 139.09 0 5 3 2 0 0 0 0.61568 1 27612 27612 0.20686 0 1 905720 + 46380 21027 30844 30864 45635 45635 0.20896020604550358 TLTKNVKKH 9 Unmodified _TLTKNVKKH_ 0 0 0 REV__tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 REV__tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5582275390625 3 356.888986 1067.64513 -0.35039 -0.00012505 0.53685 0.00019159 0.18646 6.6544E-05 356.8891507625935 16.003 0.48815 16.003 15.814 16.302 0 39 13 4 0 0 0 0.81492 1 2507 2507 1.0715 0 1 12985000 + 46381 25040 30845 30865 45636 45636 0.1140111349691324 TLTKQKNSY 9 Unmodified _TLTKQKNSY_ 0 0 0 ZNF92|p.H387Qfs*13|1|0.27|ENSG00000146757|chr7:65399274-65399275|AT/-|frameshift_variant ZNF92|p.H387Qfs*13|1|0.27|ENSG00000146757|chr7:65399274-65399275|AT/-|frameshift_variant ZNF92|p.H387Qfs*13|1|0.27|ENSG00000146757|chr7:65399274-65399275|AT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2642822265625 2 541.795663 1081.57677 0.64057 0.00034706 -1.072 -0.00058079 -0.4314 -0.00023373 541.7950257781164 45.755 0.69118 45.755 45.448 46.139 0 55 19 3 0 0 0 0.60663 1 8622 8622 26.268 7.0112 1 7372800 46382 26638 30846 30866 45637 45637 0.03924824126374915 TLTNLRKGY 9 Unmodified _TLTNLRKGY_ 0 0 0 nc|ENSG00000074696|Q9P035-2|HACD3;ENSG00000074696|ENST00000261875|HACD3 nc|ENSG00000074696|Q9P035-2|HACD3 nc|ENSG00000074696|Q9P035-2|HACD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2638549804688 2 533.306198 1064.59784 -0.077148 -4.1143E-05 1.043 0.00055623 0.96583 0.00051508 533.3061157656242 82.41 0.96484 78.711 78.246 79.211 -3.6985 77 27 4 0 0 0 0.60805 1 15630 15630 12.532 1.7076 1 14870000 46383 1501 30847 30867 45638 45638 0.06812834225888764 TLTQVKEK 8 Unmodified _TLTQVKEK_ 0 0 0 PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1 PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.159912109375 3 316.190442 945.549496 NaN NaN NaN NaN NaN NaN NaN 81.203 1 77.364 76.864 77.864 -3.8392 0 0 0 0.21486 1 15415 15415 1.6526 0 1 46384 973 30848 30868 45639 45639 0.07454340586002672 TLTQVKEK 8 Unmodified _TLTQVKEK_ 0 0 0 PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1 PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.16021728515625 3 316.190442 945.549496 NaN NaN NaN NaN NaN NaN NaN 159.78 1 154.55 154.05 155.05 -5.2299 0 0 0 0.21486 1 31015 31015 0.40072 0 1 46385 973 30848 30868 45640 45640 0.07454340586002672 TLTRKRGHLY 10 Unmodified _TLTRKRGHLY_ 0 0 0 REV__nc|ENSG00000126456|Q14653-4|IRF3 REV__nc|ENSG00000126456|Q14653-4|IRF3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.764404296875 2 622.864746 1243.71494 NaN NaN NaN NaN NaN NaN NaN 55.267 1 55.267 54.767 55.767 0 0 0 0 0.22588 1 10547 10547 3.9444 0 1 + 46386 24027 30849 30869 45641 45641 0.10282992165525684 TLTSPWKF 8 Unmodified _TLTSPWKF_ 0 0 0 REV__ENSG00000105750|ENST00000328178|ZNF85 REV__ENSG00000105750|ENST00000328178|ZNF85 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.267578125 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 50.957 1 47.905 47.405 48.405 -3.0517 0 0 0 0.22847 1 9378 9378 10.074 0 1 + 46387 15016 30850 30870 45642 45642 0.027349729028628644 TLTTGSHSL 9 Unmodified _TLTTGSHSL_ 0 0 0 ENST00000526048.1_1_11:64881042-64882849:+|nuORF ENST00000526048.1_1_11:64881042-64882849:+|nuORF ENST00000526048.1_1_11:64881042-64882849:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23822021484375 2 458.740357 915.46616 0.10921 5.0097E-05 0.17017 7.8063E-05 0.27937 0.00012816 458.7401792534244 122.85 0.56447 118.27 117.96 118.52 -4.5757 19 15 2 0 0 0 0.72864 1 24208 24208 11.64 0 1 1163100 46388 10908 30851 30871 45643 45643 0.005046041381433497 TLTTGVGA 8 Unmodified _TLTTGVGA_ 0 0 0 REV__ENSG00000169592|ENST00000563197|INO80E REV__ENSG00000169592|ENST00000563197|INO80E MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015686035156 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 89.983 1 89.983 89.483 90.483 0 0 0 0 0.21486 1 17575 17575 9.3474 0 1 + 46389 18111 30852 30872 45644 45644 0.015661625349594033 TLVDMDMADYS 11 Unmodified _TLVDMDMADYS_ 0 0 0 nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000101076|P41235-3|HNF4A nc|ENSG00000101076|P41235-3|HNF4A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7578125 2 630.759772 1259.50499 NaN NaN NaN NaN NaN NaN NaN 92.412 1 92.412 91.912 92.912 0 0 0 0 0.22943 1 18067 18067 8.7454 0.83525 1 46390 12260 30853 30873 45645 45645 -0.11438219404681149 TLVELDND 8 Unmodified _TLVELDND_ 0 0 0 REV__nc|ENSG00000156256|Q9Y5T5-4|USP16 REV__nc|ENSG00000156256|Q9Y5T5-4|USP16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.22650146484375 3 306.818674 917.434192 -0.93162 -0.00028584 -0.69684 -0.0002138 -1.6285 -0.00049964 306.8189344775921 8.8134 0.68563 8.0192 7.4929 8.1785 -0.79424 23 19 2 0 0 0 1.0281 1 933 933 0 0 1 107540 + 46391 17253 30854 30874 45646 45646 -0.027828083356780553 TLVGSVGS 8 Unmodified _TLVGSVGS_ 0 0 0 REV__CLDN20|p.L13M|1|0.09|ENSG00000171217|chr6:155275756-155275756|C/A|missense_variant REV__CLDN20|p.L13M|1|0.09|ENSG00000171217|chr6:155275756-155275756|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 119.84 1 119.84 119.34 120.34 0 0 0 0 0.21486 1 23617 23617 8.5933 0 1 + 46392 13446 30855 30875 45647 45647 0.015661625349594033 TLVIKKKV 8 Unmodified _TLVIKKKV_ 0 0 0 tr|U7SMK9|U7SMK9_FUSNUProbablecytosolaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepAPE=3SV=1 tr|U7SMK9|U7SMK9_FUSNUProbablecytosolaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepAPE=3SV=1 tr|U7SMK9|U7SMK9_FUSNUProbablecytosolaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2226867675781 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 17.476 1 16.166 15.666 16.666 -1.3109 0 0 0 0.21486 1 2800 2800 0.40072 0 1 46393 26011 30856 30876 45648 45648 0.18136988621699857 TLVILPLLLR 10 Unmodified _TLVILPLLLR_ 0 0 0 REV__EHHADH|p.L406Cfs*35|1|0.46|ENSG00000113790|chr3:185193181-185193181|A/-|frameshift_variant REV__EHHADH|p.L406Cfs*35|1|0.46|ENSG00000113790|chr3:185193181-185193181|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3158569335938 2 575.899734 1149.78492 NaN NaN NaN NaN NaN NaN NaN 39.033 1 39.033 38.533 39.533 0 0 0 0 0.22588 1 7243 7243 1.6526 0 1 + 46394 13792 30857 30877 45649 45649 0.21601477781405265 TLVKLRSKL 9 Unmodified _TLVKLRSKL_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 353.2418212890625 3 353.241248 1056.70191 NaN NaN NaN NaN NaN NaN NaN 14.621 1 13.507 13.007 14.007 -1.1142 0 0 0 0.23508 1 2203 2203 0.23584 0 1 + 46395 16048 30858 30878 45650 45650 0.1758316105342601 TLVKPVIKPA 10 Unmodified _TLVKPVIKPA_ 0 0 0 REV__nc|ENSG00000183621|Q7Z4V0-2|ZNF438 REV__nc|ENSG00000183621|Q7Z4V0-2|ZNF438 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2675170898438 2 533.35516 1064.69577 0.43535 0.0002322 3.2912 0.0017554 3.7266 0.0019876 533.3589239731104 137.06 0.10461 132.14 132.05 132.16 -4.9216 4 2 2 0 0 0 1.1246 1 26347 26347 0.0013812 0 1 598640 + 46396 18845 30859 30879 45651 45651 0.16600642821890688 TLVLAIPLLLI 11 Unmodified _TLVLAIPLLLI_ 0 0 0 OR10K2|p.S268Lfs*26|1|0.04|ENSG00000180708|chr1:158420066-158420067|-/AAATAAA|frameshift_variant;ENSG00000180708|ENST00000641042|OR10K2 OR10K2|p.S268Lfs*26|1|0.04|ENSG00000180708|chr1:158420066-158420067|-/AAATAAA|frameshift_variant OR10K2|p.S268Lfs*26|1|0.04|ENSG00000180708|chr1:158420066-158420067|-/AAATAAA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2692260742188 2 589.909768 1177.80498 0.35147 0.00020733 0.79693 0.00047011 1.1484 0.00067745 590.413614039255 151.06 0.17963 151.06 150.92 151.1 0 6 4 2 0 0 0 0.89055 1 30249 30249 0.00056442 0.00056442 1 1012200 46397 6689 30860 30880 45652 45652 0.22319228721380568 TLVLLMIKL 9 Unmodified _TLVLLMIKL_ 0 0 0 REV__ENST00000225296.7_1_17:5347294-5347528:-|nuORF REV__ENST00000225296.7_1_17:5347294-5347528:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2667236328125 2 522.348489 1042.68242 NaN NaN NaN NaN NaN NaN NaN 156.35 1 156.35 155.85 156.85 0 0 0 0 0.19656 1 31366 31366 0.073264 0 1 + 46398 20042 30861 30881 45653 45653 0.16279068718290546 TLVLRESL 8 Unmodified _TLVLRESL_ 0 0 0 COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2588806152344 2 465.784567 929.554582 -0.45128 -0.0002102 0.27282 0.00012707 -0.17846 -8.3123E-05 465.784641997828 110.05 0.48413 105.68 105.41 105.89 -4.3776 20 13 2 0 0 0 0.99494 1 21657 21657 4.756 0 1 2868400 46399 620 30862 30882 45654 45654 0.08698644448600135 TLVRKHNTIY 10 Unmodified _TLVRKHNTIY_ 0 0 0 REV__ENST00000444553.5_1_13:19625452-19630695:-|nuORF REV__ENST00000444553.5_1_13:19625452-19630695:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7815551757812 2 622.859129 1243.70371 NaN NaN NaN NaN NaN NaN NaN 95.27 1 91.079 90.579 91.579 -4.1911 0 0 0 0.22588 1 18180 18180 7.2892 2.96 1 + 46400 21739 30863 30883 45655 45655 0.09160170071390894 TLVRLRKLKF 10 Unmodified _TLVRLRKLKF_ 0 0 0 nc|ENSG00000100099|Q9NQG7-2|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000481910.1_1_22:26872952-26875347:-|nuORF;ENST00000466781.5_1_22:26864510-26877728:-|nuORF;ENST00000496385.5_1_22:26862186-26875401:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2373962402344 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 114.65 1 114.65 114.15 115.15 0 0 0 0 0.22588 1 22553 22553 0.69767 0 1 46401 12252 30864 30884 45656 45656 0.21390489652821998 TLVRLRKLKF 10 Unmodified _TLVRLRKLKF_ 0 0 0 nc|ENSG00000100099|Q9NQG7-2|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000481910.1_1_22:26872952-26875347:-|nuORF;ENST00000466781.5_1_22:26864510-26877728:-|nuORF;ENST00000496385.5_1_22:26862186-26875401:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.21905517578125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 74.041 1 70.677 70.177 71.177 -3.3643 0 0 0 2.8426 1 14441 14441 0.0013812 0 1 46402 12252 30864 30884 45657 45657 0.21390489652821998 TLVRLRKLKF 10 Unmodified _TLVRLRKLKF_ 0 0 0 nc|ENSG00000100099|Q9NQG7-2|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000481910.1_1_22:26872952-26875347:-|nuORF;ENST00000466781.5_1_22:26864510-26877728:-|nuORF;ENST00000496385.5_1_22:26862186-26875401:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2543029785156 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 129.79 1 125.16 124.66 125.66 -4.6292 0 0 0 0.22588 1 25578 25578 1.5923 0.81575 1 46403 12252 30864 30884 45658 45658 0.21390489652821998 TLVRLRKLKF 10 Unmodified _TLVRLRKLKF_ 0 0 0 nc|ENSG00000100099|Q9NQG7-2|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000481910.1_1_22:26872952-26875347:-|nuORF;ENST00000466781.5_1_22:26864510-26877728:-|nuORF;ENST00000496385.5_1_22:26862186-26875401:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2364196777344 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 49.98 1 46.981 46.481 47.481 -2.999 0 0 0 0.22588 1 9145 9145 0.62683 0.48693 1 46404 12252 30864 30884 45659 45659 0.21390489652821998 TLVRLRKLKF 10 Unmodified _TLVRLRKLKF_ 0 0 0 nc|ENSG00000100099|Q9NQG7-2|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000481910.1_1_22:26872952-26875347:-|nuORF;ENST00000466781.5_1_22:26864510-26877728:-|nuORF;ENST00000496385.5_1_22:26862186-26875401:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2475891113281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 56.576 1 53.387 52.887 53.887 -3.1895 0 0 0 2.8426 1 10490 10490 0.0013812 0 1 46405 12252 30864 30884 45660 45660 0.21390489652821998 TLVRLRKLKF 10 Unmodified _TLVRLRKLKF_ 0 0 0 nc|ENSG00000100099|Q9NQG7-2|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000481910.1_1_22:26872952-26875347:-|nuORF;ENST00000466781.5_1_22:26864510-26877728:-|nuORF;ENST00000496385.5_1_22:26862186-26875401:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2475891113281 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 56.603 1 53.413 52.913 53.913 -3.1895 0 0 0 0.22588 1 10494 10494 1.9064 0 1 46406 12252 30864 30884 45661 45661 0.21390489652821998 TLVRLRKLKF 10 Unmodified _TLVRLRKLKF_ 0 0 0 nc|ENSG00000100099|Q9NQG7-2|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000481910.1_1_22:26872952-26875347:-|nuORF;ENST00000466781.5_1_22:26864510-26877728:-|nuORF;ENST00000496385.5_1_22:26862186-26875401:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24591064453125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 121.25 1 116.72 116.22 117.22 -4.5305 0 0 0 2.8426 1 23345 23345 0.26539 0.2216 1 46407 12252 30864 30884 45662 45662 0.21390489652821998 TLVVPKYK 8 Unmodified _TLVVPKYK_ 0 0 0 REV__ENSG00000142444|ENST00000270502|TIMM29 REV__ENSG00000142444|ENST00000270502|TIMM29 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 474.3004150390625 2 474.299853 946.585153 NaN NaN NaN NaN NaN NaN NaN 114.08 1 109.53 109.03 110.03 -4.555 0 0 0 0.22674 1 21902 21902 14.838 0 1 + 46408 16671 30865 30885 45663 45663 0.10972422833663131 TLVWRLVGPY 10 Unmodified _TLVWRLVGPY_ 0 0 0 REV__ENSG00000178828|ENST00000375121|RNF186 REV__ENSG00000178828|ENST00000375121|RNF186 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2772216796875 2 602.347866 1202.68118 0.71756 0.00043222 -1.0009 -0.0006029 -0.28336 -0.00017068 602.850428566156 90.026 0.13867 85.982 85.883 86.021 -4.0443 5 3 2 0 0 0 0.65405 1 17133 17133 15.847 5.0233 1 629070 + 46409 18624 30866 30886 45664 45664 0.08794570673762792 TLWFFFSF 8 Unmodified _TLWFFFSF_ 0 0 0 ENSG00000189339|ENST00000617444|SLC35E2B;nc|ENSG00000215790|P0CK97-2|SLC35E2A;nc|ENSG00000215790|P0CK97|SLC35E2A;ENST00000481276.1_1_1:1602946-1608282:-|nuORF ENSG00000189339|ENST00000617444|SLC35E2B ENSG00000189339|ENST00000617444|SLC35E2B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7826538085938 2 547.770929 1093.5273 NaN NaN NaN NaN NaN NaN NaN 158.16 1 152.89 152.39 153.39 -5.2748 0 0 0 0.22684 1 30698 30698 0.25148 0.18761 1 46410 7225 30867 30887 45665 45665 -0.015718390917754732 TLWGIQKEL 9 Unmodified _TLWGIQKEL_ 0 0 0 ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000397561.3_1_9:14921337-14921451:-|nuORF ENST00000538451.1_1_11:18424358-18428825:+|nuORF ENST00000538451.1_1_11:18424358-18428825:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7731323242188 2 544.310949 1086.60735 0.33544 0.00018258 0.14407 7.842E-05 0.47951 0.000261 544.3107242783498 138.92 0.77138 138.92 138.63 139.4 0 48 21 3 0 0 0 0.14943 1 27627 27627 53.404 21.099 1 8787200 46411 3846 30868 30888 45666 45666 0.06750602511419856 TLWGIQKEL 9 Unmodified _TLWGIQKEL_ 0 0 0 ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000397561.3_1_9:14921337-14921451:-|nuORF ENST00000538451.1_1_11:18424358-18428825:+|nuORF ENST00000538451.1_1_11:18424358-18428825:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7890014648438 2 544.310949 1086.60735 0.27871 0.0001517 0.37277 0.0002029 0.65148 0.00035461 544.3107195605435 143.6 0.94287 138.94 138.44 139.38 -4.656 55 26 3 0 0 0 0.1155 1 28411 28411 71.708 40.44 1 11292000 46412 3846 30868 30888 45667 45667 0.06750602511419856 TLWGIQKEL 9 Unmodified _TLWGIQKEL_ 0 0 0 ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000397561.3_1_9:14921337-14921451:-|nuORF ENST00000538451.1_1_11:18424358-18428825:+|nuORF ENST00000538451.1_1_11:18424358-18428825:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.790771484375 2 544.310949 1086.60735 0.11873 6.4626E-05 0.62377 0.00033952 0.7425 0.00040415 544.3108415816207 143.94 1.1458 138.87 138.41 139.56 -5.0671 82 32 5 0 0 0 0.02936 1 27763 27763 117.76 52.526 1 12583000 46413 3846 30868 30888 45668 45668 0.06750602511419856 TLWGIQKEL 9 Unmodified _TLWGIQKEL_ 0 0 0 ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000397561.3_1_9:14921337-14921451:-|nuORF ENST00000538451.1_1_11:18424358-18428825:+|nuORF ENST00000538451.1_1_11:18424358-18428825:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7704467773438 2 544.310949 1086.60735 0.37856 0.00020606 1.3408 0.00072981 1.7194 0.00093587 544.3107553492322 143.83 1.0537 138.94 138.4 139.46 -4.8982 88 29 4 0 0 0 0.035659 1 27778 27778 83.429 41.473 1 13023000 46414 3846 30868 30888 45669 45669 0.06750602511419856 TLWRLTLKLKE 11 Unmodified _TLWRLTLKLKE_ 0 0 0 REV__PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant REV__PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 701.3388671875 2 700.934837 1399.85512 NaN NaN NaN NaN NaN NaN NaN 174.74 1 174.74 174.24 175.24 0 0 0 0 0.23698 1 36183 36183 1.3295 0 1 + 46415 24433 30869 30889 45670 45670 0.17118731379218843 TLWYRGKV 8 Unmodified _TLWYRGKV_ 0 0 0 RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant;nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17 RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 511.79296875 2 511.792727 1021.5709 NaN NaN NaN NaN NaN NaN NaN 169.87 1 164.99 164.49 165.49 -4.873 0 0 0 0.22636 1 33584 33584 4.2837 2.16 1 46416 3775 30870 30890 45671 45671 0.06097770405369829 TLWYRSPEV 9 Unmodified _TLWYRSPEV_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32861328125 2 575.798206 1149.58186 0.1501 8.6426E-05 1.1561 0.00066566 1.3062 0.00075208 575.798914957225 117.31 0.66049 112.83 112.42 113.08 -4.486 27 18 2 0 0 0 0.43219 2 23158 23096;23158 23.79 5.6434 1 2561200 46417 6059 30871 30891 45672;45673 45673 0.013051279889850775 TLYDFTGL 8 Unmodified _TLYDFTGL_ 0 0 0 REV__tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1 REV__tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.259033203125 2 465.234376 928.454199 NaN NaN NaN NaN NaN NaN NaN 55.659 1 52.522 52.022 53.022 -3.1377 0 0 0 0.2074 1 10339 10339 19.439 1.304 1 + 46418 25184 30872 30892 45674 45674 -0.012890126050479012 TLYEAVREV 9 Unmodified _TLYEAVREV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2642211914062 2 540.290214 1078.56587 0.029898 1.6154E-05 0.10695 5.7782E-05 0.13684 7.3936E-05 540.2902227483419 94.204 0.86916 94.204 93.759 94.628 0 81 24 5 0 0 0 0.039965 2 18417 18417;18420 76.825 47.743 1 32852000 46419 7487 30873 30893 45675;45676 45675 0.029734217520854145 TLYEAVREV 9 Unmodified _TLYEAVREV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2772216796875 2 540.290214 1078.56587 0.22912 0.00012379 -0.35817 -0.00019352 -0.12905 -6.9724E-05 540.2899865369043 98.156 0.86433 94.038 93.623 94.487 -4.1175 77 24 4 0 0 0 0.12612 2 19258 19255;19258 47.594 42.054 1 29092000 46420 7487 30873 30893 45677;45678 45678 0.029734217520854145 TLYEAVREV 9 Unmodified _TLYEAVREV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.290214 1078.56587 0.15217 8.2218E-05 -0.1691 -9.1361E-05 -0.016921 -9.1424E-06 540.2900756876354 97.994 0.96265 94.075 93.608 94.57 -3.9194 -0.013819 2.7035E-05 NaN 76.825 82 27 4 NaN NaN NaN NaN 0 NaN NaN 0 28789000 46421 7487 30873 30893 0.029734217520854145 TLYFIVFPGF 10 Unmodified _TLYFIVFPGF_ 0 0 0 REV__ENST00000492626.5_1_7:17929984-17937021:-|nuORF REV__ENST00000492626.5_1_7:17929984-17937021:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.27734375 2 602.326068 1202.63758 NaN NaN NaN NaN NaN NaN NaN 92.533 1 88.725 88.225 89.225 -3.8083 0 0 0 0.22588 1 17731 17731 7.2892 0.56607 1 + 46422 14271 30874 30894 45679 45679 0.044369611765887385 TLYLPSTSV 9 Unmodified _TLYLPSTSV_ 0 0 0 REV__ENST00000476966.5_1_1:156383111-156383222:-|nuORF REV__ENST00000476966.5_1_1:156383111-156383222:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2640686035156 2 490.768583 979.522613 -0.10144 -4.9781E-05 0.14981 7.3521E-05 0.048372 2.3739E-05 490.76862747212965 98.647 0.4374 94.691 94.429 94.866 -3.9564 19 12 2 0 0 0 0.79204 1 18902 18902 7.2892 0.56607 1 933110 + 46423 22111 30875 30895 45680 45680 0.03203231974805476 TLYNTSLE 8 Unmodified _TLYNTSLE_ 0 0 0 REV__CCDC168|p.K6094N|1|0.22|ENSG00000175820|chr13:102732415-102732415|T/G|missense_variant REV__CCDC168|p.K6094N|1|0.22|ENSG00000175820|chr13:102732415-102732415|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.16796875 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 115.41 1 111.1 110.6 111.6 -4.3136 0 0 0 0.21486 1 22218 22218 3.5965 0 1 + 46424 13288 30876 30896 45681 45681 -0.017222179559894357 TLYSFVAE 8 Unmodified _TLYSFVAE_ 0 0 0 REV__nc|ENSG00000110713|P52948-6|NUP98 REV__nc|ENSG00000110713|P52948-6|NUP98 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2378845214844 2 465.234376 928.454199 0.36331 0.00016902 3.0162 0.0014032 3.3795 0.0015723 465.2366503319144 21.161 0.52382 19.687 19.456 19.98 -1.4742 23 14 2 0 0 0 0.70613 1 3577 3577 13.508 0.97634 1 516130 + 46425 15212 30877 30897 45682 45682 -0.012890126050479012 TLYSPVYS 8 Unmodified _TLYSPVYS_ 0 0 0 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2591857910156 2 465.234376 928.454199 NaN NaN NaN NaN NaN NaN NaN 156.06 1 151.28 150.78 151.78 -4.7791 0 0 0 0.20294 1 31028 31028 23.148 0 1 46426 7743 30878 30898 45683 45683 -0.012890126050479012 TLYSPVYS 8 Unmodified _TLYSPVYS_ 0 0 0 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24249267578125 2 465.234376 928.454199 NaN NaN NaN NaN NaN NaN NaN 156.11 1 151.33 150.83 151.83 -4.7791 0 0 0 0.20294 1 31039 31039 23.148 0 1 46427 7743 30878 30898 45684 45684 -0.012890126050479012 TLYSPVYS 8 Unmodified _TLYSPVYS_ 0 0 0 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25640869140625 2 465.234376 928.454199 NaN NaN NaN NaN NaN NaN NaN 156.46 1 151.19 150.69 151.69 -5.2712 0 0 0 0.20294 1 30344 30344 23.148 0 1 46428 7743 30878 30898 45685 45685 -0.012890126050479012 TLYYSAELK 9 Unmodified _TLYYSAELK_ 0 0 0 REV__L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|3|1|sense REV__L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|3|1|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7732543945312 2 544.28714 1086.55973 0.3377 0.00018381 -1.9445 -0.0010584 -1.6068 -0.00087457 544.2863808825377 145.71 0.105 145.71 145.62 145.73 0 4 2 2 0 0 0 0.76271 1 29120 29120 6.2058 0.9089 1 1046700 + 46429 23762 30879 30899 45686 45686 0.019909035205728287 TMADQIVTV 9 Unmodified _TMADQIVTV_ 0 0 0 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2552795410156 2 489.252243 976.489932 0.2815 0.00013772 -0.23205 -0.00011353 0.04945 2.4194E-05 489.25211909610636 109.42 0.93189 109.42 108.92 109.85 0 64 26 3 0 0 0 0.15214 1 21489 21489 43.858 5.8843 1 24380000 46430 2921 30880 30900 45687 45687 0.0007470158031992469 TMADQIVTV 9 Unmodified _TMADQIVTV_ 0 0 0 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.257080078125 2 489.252243 976.489932 0.019971 9.7709E-06 0.03685 1.8029E-05 0.056821 2.78E-05 489.2522351500491 113.88 1.0512 109.43 108.94 109.99 -4.4538 70 29 3 0 0 0 0.16619 2 22387 22387;22436 41.84 5.7126 1 38285000 46431 2921 30880 30900 45688;45689 45688 0.0007470158031992469 TMADQIVTV 9 Unmodified _TMADQIVTV_ 0 0 0 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2548522949219 2 489.252243 976.489932 0.23726 0.00011608 -0.18304 -8.9555E-05 0.054215 2.6525E-05 489.2521320131954 114.11 1.2646 109.56 109.03 110.29 -4.555 78 35 3 0 0 0 0.09143 2 21878 21878;21909 58.679 14.821 1 35401000 46432 2921 30880 30900 45690;45691 45690 0.0007470158031992469 TMADQIVTV 9 Unmodified _TMADQIVTV_ 0 0 0 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3 STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2522888183594 2 489.252243 976.489932 0.30401 0.00014874 -0.12518 -6.1247E-05 0.17882 8.749E-05 489.25218890488986 113.77 1.1157 109.5 108.95 110.07 -4.2725 71 31 3 0 0 0 0.09143 1 21887 21887 58.679 14.821 1 31174000 46433 2921 30880 30900 45692 45692 0.0007470158031992469 TMDALKQL 8 Unmodified _TMDALKQL_ 0 0 0 REV__nc|ENSG00000106852|Q9UPM6-6|LHX6 REV__nc|ENSG00000106852|Q9UPM6-6|LHX6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2481994628906 2 460.249503 918.484453 NaN NaN NaN NaN NaN NaN NaN 7.9039 1 6.8891 6.3891 7.3891 -1.0148 0 0 0 0.21486 1 697 697 2.3027 0.4585 1 + 46434 15067 30881 30901 45693 45693 0.021950227884985907 TMDWGNVQ 8 Unmodified _TMDWGNVQ_ 0 0 0 REV__ENSG00000213977|ENST00000225525|TAX1BP3 REV__ENSG00000213977|ENST00000225525|TAX1BP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1589660644531 3 317.472732 949.396366 -0.20718 -6.5775E-05 1.0525 0.00033412 0.84527 0.00026835 317.47300335324564 99.67 0.83226 99.67 99.303 100.13 0 39 23 2 0 0 0 1.0267 1 19559 19559 3.5965 3.5965 1 4054400 + 46435 19655 30882 30902 45694 45694 -0.08035597802108896 TMDWGNVQ 8 Unmodified _TMDWGNVQ_ 0 0 0 REV__ENSG00000213977|ENST00000225525|TAX1BP3 REV__ENSG00000213977|ENST00000225525|TAX1BP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.14312744140625 3 317.472732 949.396366 -0.018544 -5.8873E-06 0.94185 0.00029901 0.92331 0.00029312 317.47294283578833 103.83 0.92568 99.773 99.417 100.34 -4.0543 51 25 3 0 0 0 1.0267 1 19944 19944 1.4819 1.1313 1 4204600 + 46436 19655 30882 30902 45695 45695 -0.08035597802108896 TMDWGNVQ 8 Unmodified _TMDWGNVQ_ 0 0 0 REV__ENSG00000213977|ENST00000225525|TAX1BP3 REV__ENSG00000213977|ENST00000225525|TAX1BP3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 317.472732 949.396366 -0.43009 -0.00013654 1.3301 0.00042228 0.90003 0.00028574 317.4730945737964 103.88 0.92388 99.661 99.376 100.3 -4.2183 -0.07177 0.0003011 NaN 3.5965 52 26 3 NaN NaN NaN NaN 0 NaN NaN 0 3559000 + 46437 19655 30882 30902 -0.08035597802108896 TMDWGNVQ 8 Unmodified _TMDWGNVQ_ 0 0 0 REV__ENSG00000213977|ENST00000225525|TAX1BP3 REV__ENSG00000213977|ENST00000225525|TAX1BP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 317.472732 949.396366 0.1882 5.9749E-05 0.62352 0.00019795 0.81172 0.0002577 317.47288996755293 104.17 0.86524 99.826 99.418 100.28 -4.346 0.093105 -0.00037187 NaN 3.5965 56 24 3 NaN NaN NaN NaN 0 NaN NaN 0 3727600 + 46438 19655 30882 30902 -0.08035597802108896 TMEGNGQWTR 10 Unmodified _TMEGNGQWTR_ 0 0 0 REV__ENSG00000154134|ENST00000397801|ROBO3 REV__ENSG00000154134|ENST00000397801|ROBO3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2618408203125 2 590.264204 1178.51386 NaN NaN NaN NaN NaN NaN NaN 39.634 1 37.229 36.729 37.729 -2.4049 0 0 0 2.8426 1 7075 7075 0.26539 0.14252 1 + 46439 17168 30883 30903 45696 45696 -0.0682606493332969 TMHDYAPLV 9 Unmodified _TMHDYAPLV_ 0 0 0 ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.7006225585938 2 523.75241 1045.49027 0.24663 0.00012917 -0.67371 -0.00035286 -0.42709 -0.00022369 523.7521909874743 97.589 0.5141 97.589 97.296 97.81 0 19 14 2 0 0 0 0.38188 1 19126 19126 26.884 5.137 1 1353600 46440 1876 30884 30904 45697 45697 -0.030658786998628784 TMHDYAPLV 9 Unmodified _TMHDYAPLV_ 0 0 0 ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6980590820312 2 523.75241 1045.49027 -0.164 -8.5895E-05 -0.65741 -0.00034432 -0.82141 -0.00043022 523.752177747587 101.71 0.89612 97.527 97.234 98.13 -4.1861 40 25 2 0 0 0 0.19311 1 20010 20010 37.974 18.535 1 2046200 46441 1876 30884 30904 45698 45698 -0.030658786998628784 TMHDYAPLV 9 Unmodified _TMHDYAPLV_ 0 0 0 ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.701416015625 2 523.75241 1045.49027 -0.22059 -0.00011553 0.18429 9.6521E-05 -0.036298 -1.9011E-05 523.7523811890928 101.81 0.58522 97.489 97.152 97.738 -4.3208 27 16 2 0 0 0 0.74655 1 19447 19447 15.847 11.903 1 2513200 46442 1876 30884 30904 45699 45699 -0.030658786998628784 TMHDYAPLV 9 Unmodified _TMHDYAPLV_ 0 0 0 ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.75241 1045.49027 0.48245 0.00025268 -0.65668 -0.00034394 -0.17423 -9.1256E-05 523.7522347802816 101.56 0.55172 97.545 97.22 97.772 -4.0159 0.0071977 -0.00032185 NaN 37.974 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1353100 46443 1876 30884 30904 -0.030658786998628784 TMHGILERS 9 Unmodified _TMHGILERS_ 0 0 0 ENSG00000078237|ENST00000179259|TIGAR ENSG00000078237|ENST00000179259|TIGAR ENSG00000078237|ENST00000179259|TIGAR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2647705078125 2 522.268758 1042.52296 NaN NaN NaN NaN NaN NaN NaN 146.2 1 141.2 140.7 141.7 -5 0 0 0 0.19636 1 28288 28288 2.4985 2.4951 1 46444 1573 30885 30905 45700 45700 0.003403284230216741 TMIDFPQMV 9 Unmodified _TMIDFPQMV_ 0 0 0 nc|ENSG00000058729|Q9BVS4-2|RIOK2;ENSG00000058729|ENST00000283109|RIOK2 nc|ENSG00000058729|Q9BVS4-2|RIOK2 nc|ENSG00000058729|Q9BVS4-2|RIOK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.492431640625 2 541.256471 1080.49839 NaN NaN NaN NaN NaN NaN NaN 169.72 1 164.79 164.29 165.29 -4.9295 0 0 0 0.20155 1 33525 33525 23.148 8.3102 1 46445 1294 30886 30906 45701 45701 -0.038640677747252994 TMILILFA 8 Unmodified _TMILILFA_ 0 0 0 REV__tr|U7T3J2|U7T3J2_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00296PE=3SV=1 REV__tr|U7T3J2|U7T3J2_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00296PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 307.2939453125 3 307.854114 920.540511 -0.16638 -5.1221E-05 -1.2852 -0.00039566 -1.4516 -0.00044688 307.85484500911014 179.12 0.76161 174.2 173.95 174.71 -4.9108 27 21 2 0 0 0 1.0277 1 35807 35807 0 0 1 73302 + 46446 25362 30887 30907 45702 45702 0.077062756959549 TMINAIPVA 9 Unmodified _TMINAIPVA_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2592468261719 2 465.259871 928.505189 NaN NaN NaN NaN NaN NaN NaN 134.79 1 129.92 129.42 130.42 -4.8726 0 0 0 0.12288 1 25892 25892 34.102 7.2188 1 46447 1830 30888 30908 45703 45703 0.03807613168157786 TMITKRLAQV 10 Unmodified _TMITKRLAQV_ 0 0 0 ENST00000461353.1_1_1:19545799-19546215:-|nuORF;nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 ENST00000461353.1_1_1:19545799-19546215:-|nuORF ENST00000461353.1_1_1:19545799-19546215:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7212829589844 3 387.565514 1159.67471 -0.3343 -0.00012956 -0.34711 -0.00013453 -0.68141 -0.00026409 387.56564807826567 70.9 0.53197 67.651 67.389 67.921 -3.2492 31 14 3 0 0 0 0.91149 1 13797 13797 8.4443 7.5799 1 1749900 46448 3476 30889 30909 45704 45704 0.1012630945069759 TMITKRLAQV 10 Unmodified _TMITKRLAQV_ 0 0 0 ENST00000461353.1_1_1:19545799-19546215:-|nuORF;nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 ENST00000461353.1_1_1:19545799-19546215:-|nuORF ENST00000461353.1_1_1:19545799-19546215:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.721435546875 3 387.565514 1159.67471 -0.28747 -0.00011141 0.21317 8.2618E-05 -0.074302 -2.8797E-05 387.56555707314897 71.265 0.38432 67.798 67.556 67.941 -3.467 15 10 2 0 0 0 1.1276 1 13511 13511 6.6304 2.754 1 837460 46449 3476 30889 30909 45705 45705 0.1012630945069759 TMLDFPQHV 9 Unmodified _TMLDFPQHV_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;NLN|p.G628Dfs*29|1|0.22|ENSG00000123213|chr5:65812290-65812290|G/-|frameshift_variant ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7701416015625 2 544.265684 1086.51682 0.33186 0.00018062 -0.23129 -0.00012588 0.10057 5.4737E-05 544.2655496607972 126.73 0.44986 126.73 126.54 126.99 0 20 12 2 0 0 0 0.40905 1 25009 25009 34.402 25.808 1 3240500 46450 3257 30890 30910 45706 45706 -0.022981898084935892 TMLDFPQHV 9 Unmodified _TMLDFPQHV_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;NLN|p.G628Dfs*29|1|0.22|ENSG00000123213|chr5:65812290-65812290|G/-|frameshift_variant ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7733154296875 2 544.265684 1086.51682 0.19489 0.00010607 0.74725 0.0004067 0.94214 0.00051277 544.2658193949301 131.39 0.64244 126.76 126.39 127.03 -4.6359 35 17 3 0 0 0 0.7906 1 25872 25872 18.146 12.386 1 3786000 46451 3257 30890 30910 45707 45707 -0.022981898084935892 TMLDFPQHV 9 Unmodified _TMLDFPQHV_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;NLN|p.G628Dfs*29|1|0.22|ENSG00000123213|chr5:65812290-65812290|G/-|frameshift_variant ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7728881835938 2 544.265684 1086.51682 0.26879 0.00014629 0.31837 0.00017328 0.58716 0.00031957 544.2656993074716 131.48 0.68134 126.71 126.46 127.14 -4.7725 36 18 3 0 0 0 0.7906 1 25340 25340 18.146 3.5647 1 2414100 46452 3257 30890 30910 45708 45708 -0.022981898084935892 TMLLIFGFH 9 Unmodified _TMLLIFGFH_ 0 0 0 REV__nc|ENSG00000183960|Q96L42-2|KCNH8 REV__nc|ENSG00000183960|Q96L42-2|KCNH8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 3 360.196651 1077.56812 NaN NaN NaN NaN NaN NaN NaN 178.97 1 178.97 178.47 179.47 0 0 0 0 0.23508 1 37072 37072 1.1933 0 1 + 46453 24204 30891 30911 45709 45709 0.03244178956219912 TMLRMRAA 8 Unmodified _TMLRMRAA_ 0 0 0 ENST00000343483.6_1_7:27203265-27204613:-|nuORF;ENST00000396345.1_1_7:27203265-27204918:-|nuORF ENST00000343483.6_1_7:27203265-27204613:-|nuORF ENST00000343483.6_1_7:27203265-27204613:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1748962402344 3 317.173852 948.499726 NaN NaN NaN NaN NaN NaN NaN 98.571 1 98.571 98.071 99.071 0 0 0 0 0.21486 1 19323 19323 3.5965 1.9439 1 46454 8877 30892 30912 45710 45710 0.02341611104702679 TMLRMRAA 8 Unmodified _TMLRMRAA_ 0 0 0 ENST00000343483.6_1_7:27203265-27204613:-|nuORF;ENST00000396345.1_1_7:27203265-27204918:-|nuORF ENST00000343483.6_1_7:27203265-27204613:-|nuORF ENST00000343483.6_1_7:27203265-27204613:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1595153808594 3 317.173852 948.499726 NaN NaN NaN NaN NaN NaN NaN 98.653 1 98.653 98.153 99.153 0 0 0 0 0.21486 1 19338 19338 3.5965 1.9439 1 46455 8877 30892 30912 45711 45711 0.02341611104702679 TMLRMRAA 8 Unmodified _TMLRMRAA_ 0 0 0 ENST00000343483.6_1_7:27203265-27204613:-|nuORF;ENST00000396345.1_1_7:27203265-27204918:-|nuORF ENST00000343483.6_1_7:27203265-27204613:-|nuORF ENST00000343483.6_1_7:27203265-27204613:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.17852783203125 3 317.173852 948.499726 NaN NaN NaN NaN NaN NaN NaN 94.515 1 90.524 90.024 91.024 -3.9907 0 0 0 0.21486 1 18521 18521 3.5965 1.9439 1 46456 8877 30892 30912 45712 45712 0.02341611104702679 TMLRMRAA 8 Unmodified _TMLRMRAA_ 0 0 0 ENST00000343483.6_1_7:27203265-27204613:-|nuORF;ENST00000396345.1_1_7:27203265-27204918:-|nuORF ENST00000343483.6_1_7:27203265-27204613:-|nuORF ENST00000343483.6_1_7:27203265-27204613:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1745910644531 3 317.173852 948.499726 NaN NaN NaN NaN NaN NaN NaN 104.73 1 100.51 100.01 101.01 -4.2183 0 0 0 0.21486 1 20604 20604 3.5965 1.098 1 46457 8877 30892 30912 45713 45713 0.02341611104702679 TMMCLMYG 8 Unmodified _TMMCLMYG_ 0 0 0 nc|ENSG00000167107|Q96CM8-4|ACSF2;nc|ENSG00000167107|Q96CM8-3|ACSF2;ENSG00000167107|ENST00000300441|ACSF2;nc|ENSG00000167107|Q96CM8-2|ACSF2;ENST00000513101.1_1_17:48540594-48548505:+|nuORF nc|ENSG00000167107|Q96CM8-4|ACSF2 nc|ENSG00000167107|Q96CM8-4|ACSF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 475.1879577636719 2 475.186145 948.357738 NaN NaN NaN NaN NaN NaN NaN 153.96 1 148.69 148.19 149.19 -5.2669 0 0 0 0.22834 1 29852 29852 0.12286 0 1 46458 5784 30893 30913 45714 45714 -0.11850686024149581 TMPERCGR 8 Unmodified _TMPERCGR_ 0 0 0 REV__ENST00000496583.1_1_19:54694392-54694767:+|nuORF REV__ENST00000496583.1_1_19:54694392-54694767:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1596984863281 3 317.149595 948.426955 NaN NaN NaN NaN NaN NaN NaN 100.41 1 100.41 99.914 100.91 0 0 0 0 0.21486 1 19702 19702 1.6526 0 1 + 46459 22391 30894 30914 45715 45715 -0.04932142688721797 TMPERCGR 8 Unmodified _TMPERCGR_ 0 0 0 REV__ENST00000496583.1_1_19:54694392-54694767:+|nuORF REV__ENST00000496583.1_1_19:54694392-54694767:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1184997558594 3 317.149595 948.426955 NaN NaN NaN NaN NaN NaN NaN 103.23 1 98.888 98.388 99.388 -4.346 0 0 0 0.21486 1 19770 19770 1.6526 0 1 + 46460 22391 30894 30914 45716 45716 -0.04932142688721797 TMPLLYVL 8 Unmodified _TMPLLYVL_ 0 0 0 REV__NMUR2|p.F224V|1|0.05|ENSG00000132911|chr5:152404444-152404444|A/C|missense_variant REV__NMUR2|p.F224V|1|0.05|ENSG00000132911|chr5:152404444-152404444|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1380615234375 3 317.185752 948.535426 NaN NaN NaN NaN NaN NaN NaN 100.42 1 96.26 95.76 96.76 -4.1594 0 0 0 0.21486 1 19737 19737 1.6526 0 1 + 46461 24370 30895 30915 45717 45717 0.05909971833352756 TMPLLYVL 8 Unmodified _TMPLLYVL_ 0 0 0 REV__NMUR2|p.F224V|1|0.05|ENSG00000132911|chr5:152404444-152404444|A/C|missense_variant REV__NMUR2|p.F224V|1|0.05|ENSG00000132911|chr5:152404444-152404444|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.14813232421875 3 317.185752 948.535426 NaN NaN NaN NaN NaN NaN NaN 105.34 1 101.07 100.57 101.57 -4.2638 0 0 0 0.21486 1 20729 20729 1.6526 0 1 + 46462 24370 30895 30915 45718 45718 0.05909971833352756 TMPRGRKKRVP 11 Unmodified _TMPRGRKKRVP_ 0 0 0 REV__ENSG00000168005|ENST00000294244|SPINDOC REV__ENSG00000168005|ENST00000294244|SPINDOC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 663.4027709960938 2 663.400973 1324.78739 NaN NaN NaN NaN NaN NaN NaN 68.36 1 65.18 64.68 65.68 -3.1796 0 0 0 0.2367 1 13275 13275 2.9952 0 1 + 46463 17987 30896 30916 45719 45719 0.13799002967425622 TMQRNLAL 8 Unmodified _TMQRNLAL_ 0 0 0 ENST00000531778.1_1_11:134251834-134254167:-|nuORF;ENSG00000109956|ENST00000312527|B3GAT1;nc|ENSG00000109956|Q9P2W7-2|B3GAT1 ENST00000531778.1_1_11:134251834-134254167:-|nuORF ENST00000531778.1_1_11:134251834-134254167:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.17547607421875 3 316.176138 945.506586 NaN NaN NaN NaN NaN NaN NaN 134.68 1 134.68 134.18 135.18 0 0 0 0 0.21486 1 26663 26663 0.45834 0 1 46464 2551 30897 30917 45720 45720 0.03165247256913517 TMRQGTVG 8 Unmodified _TMRQGTVG_ 0 0 0 ENST00000521817.1_1_8:95272332-95274320:-|nuORF;ENST00000523660.1_1_8:95272332-95274501:-|nuORF;ENSG00000164949|ENST00000297596|GEM ENST00000521817.1_1_8:95272332-95274320:-|nuORF ENST00000521817.1_1_8:95272332-95274320:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2449951171875 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 105.64 1 105.64 105.14 106.14 0 0 0 0 0.21486 1 20763 20763 4.756 0 1 46465 5581 30898 30918 45721 45721 -0.012835877025963782 TMSAVVKKV 9 Unmodified _TMSAVVKKV_ 0 0 0 ENSG00000186141|ENST00000334163|POLR3C;POLR3C|p.T412Hfs*15|1|0.39|ENSG00000186141|chr1:145839899-145839899|A/-|frameshift_variant ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7888488769531 2 481.788795 961.563038 0.13101 6.3121E-05 -0.52115 -0.00025109 -0.39014 -0.00018797 481.78837666286086 37.903 0.13792 35.565 35.464 35.602 -2.3375 5 3 2 0 0 0 0.54076 1 6722 6722 17.113 7.7655 1 303540 46466 7037 30899 30919 45722 45722 0.08071875093583003 TMSLTMTE 8 Unmodified _TMSLTMTE_ 0 0 0 REV__ENST00000296315.7_1_3:56762359-56762437:-|nuORF REV__ENST00000296315.7_1_3:56762359-56762437:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 305.1606140136719 3 305.138361 912.393255 NaN NaN NaN NaN NaN NaN NaN 66.688 1 63.58 63.08 64.08 -3.1086 0 0 0 0.21486 1 12928 12928 1.6526 0 1 + 46467 20373 30900 30920 45723 45723 -0.06644608971134858 TMTSSLYF 8 Unmodified _TMTSSLYF_ 0 0 0 PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4;nc|ENSG00000244694|Q6ZW05-4|PTCHD4 PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1543884277344 3 317.149366 948.426269 NaN NaN NaN NaN NaN NaN NaN 101.07 1 96.777 96.277 97.277 -4.297 0 0 0 0.21486 1 19339 19339 1.6526 0 1 46468 7885 30901 30921 45724 45724 -0.05000658856783957 TMTTTSRSCWA 11 Unmodified _TMTTTSRSCWA_ 0 0 0 ENST00000251582.11_1_5:178634527-178634626:-|nuORF ENST00000251582.11_1_5:178634527-178634626:-|nuORF ENST00000251582.11_1_5:178634527-178634626:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7747192382812 2 622.773548 1243.53254 NaN NaN NaN NaN NaN NaN NaN 165.59 1 165.59 165.09 166.09 0 0 0 0 0.22632 1 33624 33624 0.172 0.16862 1 46469 8222 30902 30922 45725 45725 -0.07948271353757264 TMVLTSIKG 9 Unmodified _TMVLTSIKG_ 0 0 0 ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36;STK36|p.T163I|1|0.26|ENSG00000163482|chr2:218676082-218676082|C/T|missense_variant ENSG00000163482|ENST00000295709|STK36 ENSG00000163482|ENST00000295709|STK36 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.22210693359375 3 317.184411 948.531403 NaN NaN NaN NaN NaN NaN NaN 97.545 1 97.545 97.045 98.045 0 0 0 0 0.19652 1 19118 19118 0.073264 0 1 46470 5432 30903 30923 45726 45726 0.05507882339634307 TMVLTSIKG 9 Unmodified _TMVLTSIKG_ 0 0 0 ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36;STK36|p.T163I|1|0.26|ENSG00000163482|chr2:218676082-218676082|C/T|missense_variant ENSG00000163482|ENST00000295709|STK36 ENSG00000163482|ENST00000295709|STK36 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.18389892578125 3 317.184411 948.531403 NaN NaN NaN NaN NaN NaN NaN 169.06 1 164.14 163.64 164.64 -4.9295 0 0 0 0.23508 1 33362 33362 0.96228 0.50394 1 46471 5432 30903 30923 45727 45727 0.05507882339634307 TMVLTSIKG 9 Unmodified _TMVLTSIKG_ 0 0 0 ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36;STK36|p.T163I|1|0.26|ENSG00000163482|chr2:218676082-218676082|C/T|missense_variant ENSG00000163482|ENST00000295709|STK36 ENSG00000163482|ENST00000295709|STK36 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1832275390625 3 317.184411 948.531403 NaN NaN NaN NaN NaN NaN NaN 169.36 1 164.43 163.93 164.93 -4.9295 0 0 0 0.23508 1 33437 33437 0.96228 0.50394 1 46472 5432 30903 30923 45728 45728 0.05507882339634307 TNAAVKDVP 9 Unmodified _TNAAVKDVP_ 0 0 0 REV__nc|ENSG00000163681|Q14BN4-7|SLMAP REV__nc|ENSG00000163681|Q14BN4-7|SLMAP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23443603515625 2 457.750724 913.486896 0.65484 0.00029975 -0.44597 -0.00020414 0.20887 9.5611E-05 457.7504735450487 28.611 0.30777 26.655 26.502 26.81 -1.9561 10 8 2 0 0 0 0.23744 1 5093 5093 36.127 0 1 302340 + 46473 17599 30904 30924 45729 45729 0.026691945178072274 TNACYMEEA 9 Unmodified _TNACYMEEA_ 0 0 0 HK3|p.E758Gfs*38|1|0.37|ENSG00000160883|chr5:176881812-176881813|-/C|frameshift_variant;ENSG00000160883|ENST00000292432|HK3 HK3|p.E758Gfs*38|1|0.37|ENSG00000160883|chr5:176881812-176881813|-/C|frameshift_variant HK3|p.E758Gfs*38|1|0.37|ENSG00000160883|chr5:176881812-176881813|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.8038330078125 3 344.465137 1030.37358 -0.72435 -0.00024951 -1.551 -0.00053425 -2.2753 -0.00078377 344.4646986494453 54.178 1.0162 51.04 50.816 51.833 -3.1377 41 28 2 0 0 0 0.49861 1 10162 10162 0.12781 0 1 8288200 46474 5272 30905 30925 45730 45730 -0.14038984981903013 TNCEDDSDSD 10 Unmodified _TNCEDDSDSD_ 0 0 0 REV__ENST00000532162.5_1_11:8715645-8720554:-|nuORF REV__ENST00000532162.5_1_11:8715645-8720554:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 550.5406494140625 2 550.669665 1099.32478 NaN NaN NaN NaN NaN NaN NaN 163.34 1 158.55 158.05 159.05 -4.7898 0 0 0 2.8426 1 32556 32556 0.0013812 0 1 + 46475 17850 30906 30926 45731 45731 -0.2209122680794735 TNDENNFLDY 10 Unmodified _TNDENNFLDY_ 0 0 0 nc|ENSG00000214694|A8MVX0|ARHGEF33;ENSG00000214694|ENST00000409978|ARHGEF33 nc|ENSG00000214694|A8MVX0|ARHGEF33 nc|ENSG00000214694|A8MVX0|ARHGEF33 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7549438476562 2 622.756932 1243.49931 NaN NaN NaN NaN NaN NaN NaN 54.54 1 51.656 51.156 52.156 -2.8837 0 0 0 0.22588 1 10413 10413 6.2058 1.3088 1 46476 7730 30907 30927 45732 45732 -0.11269858600462612 TNDHSPVFEQS 11 Unmodified _TNDHSPVFEQS_ 0 0 0 nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;CELSR1|p.G614Afs*54|3|0.27|ENSG00000075275|chr22:46535330-46535330|C/-|frameshift_variant;nc|ENSG00000075275|Q9NYQ6-2|CELSR1;CELSR1|p.G1602Vfs*104|1|0.17|ENSG00000075275|chr22:46410526-46410526|C/-|frameshift_variant;CELSR1|p.T1849Rfs*8|2|0.25|ENSG00000075275|chr22:46397831-46397831|C/-|frameshift_variant;CELSR1|p.R2275Qfs*18|1|0.18|ENSG00000075275|chr22:46384603-46384604|-/G|frameshift_variant;CELSR1|p.I2650Sfs*5|1|0.42|ENSG00000075275|chr22:46369187-46369187|T/-|frameshift_variant nc|ENSG00000075275|Q9NYQ6|CELSR1 nc|ENSG00000075275|Q9NYQ6|CELSR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7490234375 2 630.778199 1259.54184 NaN NaN NaN NaN NaN NaN NaN 90.364 1 86.586 86.086 87.086 -3.7779 0 0 0 0.17845 1 17293 17293 23.79 5.6434 1 46477 1514 30908 30928 45733 45733 -0.07754463472224415 TNDPGLFR 8 Unmodified _TNDPGLFR_ 0 0 0 REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2 REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2357482910156 2 460.235242 918.45593 0.022414 1.0316E-05 0.562 0.00025865 0.58441 0.00026897 460.2354198351024 76.828 0.82706 73.061 72.505 73.332 -3.7664 39 23 2 0 0 0 0.52597 2 14484 14484;14506 26.884 0 1 1550800 + 46478 17197 30909 30929 45734;45735 45734 -0.006559587964261482 TNDRYDVP 8 Unmodified _TNDRYDVP_ 0 0 0 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2636413574219 2 490.227613 978.440674 0.50943 0.00024974 -0.54345 -0.00026642 -0.034022 -1.6679E-05 490.2273458093358 47.561 5.9984 47.561 44.849 50.848 0 217 171 2 0 0 0 0.12867 5 8916 8597;8876;8916;9174;9307 57.471 8.3885 1 7435900 + 46479 16906 30910 30930 45736;45737;45738;45739;45740 45738 -0.04940870384291429 TNDRYDVP 8 Unmodified _TNDRYDVP_ 0 0 0 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26611328125 2 490.227613 978.440674 0.17593 8.6247E-05 1.5396 0.00075474 1.7155 0.00084099 490.2283613839824 53.761 0.75243 53.761 53.281 54.033 0 33 20 2 0 0 0 0.54916 1 10191 10191 25.399 0 1 1552500 + 46480 16906 30910 30930 45741 45741 -0.04940870384291429 TNDRYDVP 8 Unmodified _TNDRYDVP_ 0 0 0 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.256103515625 2 490.227613 978.440674 -0.03573 -1.7516E-05 -0.035553 -1.7429E-05 -0.071283 -3.4945E-05 490.22757605288115 50.734 3.179 47.851 46.413 49.592 -2.8824 144 90 2 0 0 0 0.17453 1 9651 9651 48.346 0 1 3563900 + 46481 16906 30910 30930 45742 45742 -0.04940870384291429 TNDRYDVP 8 Unmodified _TNDRYDVP_ 0 0 0 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27520751953125 2 490.227613 978.440674 -0.30668 -0.00015034 0.21113 0.0001035 -0.095556 -4.6844E-05 490.2277288453064 50.782 3.151 47.731 46.197 49.348 -3.0517 149 90 2 0 0 0 0.17453 1 9373 9373 48.346 0 1 4717000 + 46482 16906 30910 30930 45743 45743 -0.04940870384291429 TNDRYDVP 8 Unmodified _TNDRYDVP_ 0 0 0 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.227613 978.440674 0.16568 8.1221E-05 2.1152 0.001037 2.2809 0.0011182 490.22849255440644 56.82 0.62524 53.63 53.336 53.962 -3.1895 -0.051352 0.00036785 NaN 25.399 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1255500 + 46483 16906 30910 30930 -0.04940870384291429 TNEAGCFLPN 10 Unmodified _TNEAGCFLPN_ 0 0 0 REV__ENSG00000115816|ENST00000234170|CEBPZ REV__ENSG00000115816|ENST00000234170|CEBPZ MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.286865234375 2 533.237124 1064.45969 NaN NaN NaN NaN NaN NaN NaN 115.15 1 110.68 110.18 111.18 -4.4726 0 0 0 0.08475 1 22694 22694 74.2 22.57 1 + 46484 15451 30911 30931 45744 45744 -0.06995657084871709 TNEAGCFLPN 10 Unmodified _TNEAGCFLPN_ 0 0 0 REV__ENSG00000115816|ENST00000234170|CEBPZ REV__ENSG00000115816|ENST00000234170|CEBPZ MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2612915039062 2 533.237124 1064.45969 NaN NaN NaN NaN NaN NaN NaN 115.22 1 110.75 110.25 111.25 -4.4726 0 0 0 0.081306 1 22710 22710 61.602 13.853 1 + 46485 15451 30911 30931 45745 45745 -0.06995657084871709 TNEDFEFLY 9 Unmodified _TNEDFEFLY_ 0 0 0 ENSG00000164675|ENST00000324698|IQUB;nc|ENSG00000164675|Q8NA54-2|IQUB ENSG00000164675|ENST00000324698|IQUB ENSG00000164675|ENST00000324698|IQUB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2587890625 2 589.256037 1176.49752 0.030575 1.8017E-05 1.6383 0.00096539 1.6689 0.00098341 589.2578598024223 85.241 0.82196 81.53 81.015 81.837 -3.7117 48 23 3 0 0 0 0.5059 1 16233 16233 19.257 3.4098 1 3102100 46486 5561 30912 30932 45746 45746 -0.08366867618406104 TNEIFSLVR 9 Unmodified _TNEIFSLVR_ 0 0 0 REV__tr|U7T5S7|U7T5S7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00069PE=4SV=1 REV__tr|U7T5S7|U7T5S7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00069PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 80.032 1 80.032 79.532 80.532 0 0 0 0 0.23508 1 15578 15578 10.8 1.2555 1 + 46487 25423 30913 30933 45747 45747 0.0461712798901317 TNEIQSNIY 9 Unmodified _TNEIQSNIY_ 0 0 0 ENST00000411828.5_1_21:40547518-40555177:-|nuORF;nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1 ENST00000411828.5_1_21:40547518-40555177:-|nuORF ENST00000411828.5_1_21:40547518-40555177:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2615966796875 2 541.261653 1080.50875 0.080655 4.3655E-05 0.28145 0.00015234 0.3621 0.00019599 541.2624079180208 57.006 0.73027 54.111 53.718 54.448 -2.8944 32 20 3 0 0 0 0.5685 1 10982 10982 15.248 1.3424 1 1186400 46488 9579 30914 30934 45748 45748 -0.028280455242793323 TNEKLTEAK 9 Unmodified _TNEKLTEAK_ 0 0 0 REV__tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1 REV__tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.08349609375 3 345.188989 1032.54514 NaN NaN NaN NaN NaN NaN NaN 117.75 1 113.25 112.75 113.75 -4.502 0 0 0 0.23508 1 23212 23212 2.086 0 1 + 46489 25375 30915 30935 45749 45749 0.03016831372406159 TNELLHKLIA 10 Unmodified _TNELLHKLIA_ 0 0 0 REV__ENST00000490579.1_1_3:183995094-184008674:+|nuORF REV__ENST00000490579.1_1_3:183995094-184008674:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.333984375 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 104.32 1 99.973 99.473 100.47 -4.346 0 0 0 0.22583 1 19984 19984 13.906 1.7313 1 + 46490 16826 30916 30936 45750 45750 0.10169962948543798 TNELLHKLIA 10 Unmodified _TNELLHKLIA_ 0 0 0 REV__ENST00000490579.1_1_3:183995094-184008674:+|nuORF REV__ENST00000490579.1_1_3:183995094-184008674:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3345336914062 2 576.342781 1150.67101 0.71308 0.00041098 -3.1719 -0.0018281 -2.4589 -0.0014171 576.3422354239234 104.25 0.35658 100.19 99.949 100.31 -4.0543 10 9 2 0 0 0 0.71778 1 20008 20008 9.3831 0.035688 1 964990 + 46491 16826 30916 30936 45751 45751 0.10169962948543798 TNENVDIYN 9 Unmodified _TNENVDIYN_ 0 0 0 tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1 tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1 tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2801513671875 2 541.24346 1080.47237 NaN NaN NaN NaN NaN NaN NaN 47.131 1 44.29 43.79 44.79 -2.8409 0 0 0 0.18247 1 8897 8897 34.402 9.0024 1 46492 26002 30917 30937 45752 45752 -0.0646492242099157 TNFFINVRAY 10 Unmodified _TNFFINVRAY_ 0 0 0 REV__ENST00000488099.1_1_2:38809156-38812824:-|nuORF REV__ENST00000488099.1_1_2:38809156-38812824:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.781982421875 2 622.824755 1243.63496 NaN NaN NaN NaN NaN NaN NaN 114.04 1 109.72 109.22 110.22 -4.3136 0 0 0 0.22573 1 21963 21963 15.248 1.3424 1 + 46493 22267 30918 30938 45753 45753 0.022885057716621304 TNFFINVRAY 10 Unmodified _TNFFINVRAY_ 0 0 0 REV__ENST00000488099.1_1_2:38809156-38812824:-|nuORF REV__ENST00000488099.1_1_2:38809156-38812824:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.775390625 2 622.824755 1243.63496 NaN NaN NaN NaN NaN NaN NaN 114.07 1 109.76 109.26 110.26 -4.3136 0 0 0 0.22559 1 21970 21970 17.113 2.7075 1 + 46494 22267 30918 30938 45754 45754 0.022885057716621304 TNFRLLKRR 9 Unmodified _TNFRLLKRR_ 0 0 0 ENSG00000243811|ENST00000216099|APOBEC3D;ENSG00000244509|ENST00000361441|APOBEC3C ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2886962890625 2 602.375281 1202.73601 NaN NaN NaN NaN NaN NaN NaN 87.469 1 83.474 82.974 83.974 -3.9953 0 0 0 0.1963 1 16657 16657 0.0033805 0 1 46495 7875 30919 30939 45755 45755 0.1427500226502616 TNGDSFSPD 9 Unmodified _TNGDSFSPD_ 0 0 0 ENSG00000009780|ENST00000373954|FAM76A;nc|ENSG00000009780|Q8TAV0-3|FAM76A ENSG00000009780|ENST00000373954|FAM76A ENSG00000009780|ENST00000373954|FAM76A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.7952880859375 3 313.794528 938.361755 NaN NaN NaN NaN NaN NaN NaN 49.111 1 46.112 45.612 46.612 -2.999 0 0 0 0.19705 1 8975 8975 7.4771 6.8502 1 46496 1053 30920 30940 45756 45756 -0.10989142409221131 TNGLPLPEEP 10 Unmodified _TNGLPLPEEP_ 0 0 0 REV__ENST00000482990.1_1_2:27479185-27480240:-|nuORF REV__ENST00000482990.1_1_2:27479185-27480240:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2669677734375 2 533.774396 1065.53424 0.4075 0.00021751 -0.45856 -0.00024477 -0.051058 -2.7253E-05 533.7741244693741 106.11 1.5284 101.74 100.91 102.44 -4.3764 74 43 2 0 0 0 0.57141 1 20340 20340 31.268 11.906 1 14992000 + 46497 15408 30921 30941 45757 45757 0.004094289981367183 TNGPGGIR 8 Unmodified _TNGPGGIR_ 0 0 0 NUP133|p.S769N|1|0.41|ENSG00000069248|chr1:229464869-229464869|C/T|missense_variant NUP133|p.S769N|1|0.41|ENSG00000069248|chr1:229464869-229464869|C/T|missense_variant NUP133|p.S769N|1|0.41|ENSG00000069248|chr1:229464869-229464869|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 386.2099304199219 2 386.209027 770.403501 NaN NaN NaN NaN NaN NaN NaN 54.221 1 51.337 50.837 51.837 -2.8837 0 0 0 0.21486 1 10342 10342 12.532 0 1 46498 12717 30922 30942 45758 45758 0.009115028606174747 TNGQPWLL 8 Unmodified _TNGQPWLL_ 0 0 0 CORO7|p.A848T|1|0.19|ENSG00000262246|chr16:4358019-4358019|C/T|missense_variant CORO7|p.A848T|1|0.19|ENSG00000262246|chr16:4358019-4358019|C/T|missense_variant CORO7|p.A848T|1|0.19|ENSG00000262246|chr16:4358019-4358019|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2503967285156 2 464.747985 927.481417 0.019217 8.9312E-06 -2.7405 -0.0012737 -2.7213 -0.0012647 464.74575053579446 42.233 0.8832 39.627 38.98 39.863 -2.606 51 24 3 0 0 0 8448 1 7531 7531 6.2058 6.0829 1 4717600 46499 711 30923 30943 45759 45759 0.01477515725991907 TNGSGSAN 8 Unmodified _TNGSGSAN_ 0 0 0 REV__ENSG00000185742|ENST00000327419|C11orf87 REV__ENSG00000185742|ENST00000327419|C11orf87 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 354.24871826171875 2 354.151375 706.288196 NaN NaN NaN NaN NaN NaN NaN 6.5814 1 5.5665 5.0665 6.0665 -1.0148 0 0 0 0.21486 1 437 437 0 0 1 + 46500 18984 30924 30944 45760 45760 -0.07669646061049207 TNHGALRGGP 10 Unmodified _TNHGALRGGP_ 0 0 0 ENST00000498157.1_1_1:109816296-109816506:+|nuORF ENST00000498157.1_1_1:109816296-109816506:+|nuORF ENST00000498157.1_1_1:109816296-109816506:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2550354003906 2 490.25704 978.499526 NaN NaN NaN NaN NaN NaN NaN 56.22 1 53.03 52.53 53.53 -3.1895 0 0 0 0.22588 1 10414 10414 6.7232 0.96273 1 46501 10597 30925 30945 45761 45761 0.009416507007131258 TNHGALRGGP 10 Unmodified _TNHGALRGGP_ 0 0 0 ENST00000498157.1_1_1:109816296-109816506:+|nuORF ENST00000498157.1_1_1:109816296-109816506:+|nuORF ENST00000498157.1_1_1:109816296-109816506:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2587890625 2 490.25704 978.499526 NaN NaN NaN NaN NaN NaN NaN 46.341 1 43.475 42.975 43.975 -2.8666 0 0 0 0.22588 1 8433 8433 9.3831 0.035688 1 46502 10597 30925 30945 45762 45762 0.009416507007131258 TNHKPLPR 8 Unmodified _TNHKPLPR_ 0 0 0 nc|ENSG00000158816|Q5TIE3-4|VWA5B1;nc|ENSG00000158816|Q5TIE3-5|VWA5B1;ENSG00000158816|ENST00000289815|VWA5B1;nc|ENSG00000158816|Q5TIE3|VWA5B1;nc|ENSG00000158816|Q5TIE3-3|VWA5B1 nc|ENSG00000158816|Q5TIE3-4|VWA5B1 nc|ENSG00000158816|Q5TIE3-4|VWA5B1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78021240234375 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 110.97 1 106.54 106.04 107.04 -4.4231 0 0 0 0.18481 1 21859 21859 2.643 0.90076 1 46503 12400 30926 30946 45763 45763 0.06343715602804423 TNHKPLPR 8 Unmodified _TNHKPLPR_ 0 0 0 nc|ENSG00000158816|Q5TIE3-4|VWA5B1;nc|ENSG00000158816|Q5TIE3-5|VWA5B1;ENSG00000158816|ENST00000289815|VWA5B1;nc|ENSG00000158816|Q5TIE3|VWA5B1;nc|ENSG00000158816|Q5TIE3-3|VWA5B1 nc|ENSG00000158816|Q5TIE3-4|VWA5B1 nc|ENSG00000158816|Q5TIE3-4|VWA5B1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7820129394531 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 129.68 1 124.84 124.34 125.34 -4.8355 0 0 0 0.23025 1 24896 24896 0.12286 0 1 46504 12400 30926 30946 45764 45764 0.06343715602804423 TNHKVLGPP 9 Unmodified _TNHKVLGPP_ 0 0 0 ENST00000438282.6_1_3:2613181-3030164:+|nuORF;CNTN4|p.P504Lfs*18|4|0.33|ENSG00000144619|chr3:3026122-3026122|C/-|frameshift_variant;ENST00000430505.6_1_3:2613181-3079017:+|nuORF;CNTN4|p.G935Dfs*35|1|0.41|ENSG00000144619|chr3:3043692-3043692|A/-|frameshift_variant;ENSG00000144619|ENST00000418658|CNTN4 ENST00000438282.6_1_3:2613181-3030164:+|nuORF ENST00000438282.6_1_3:2613181-3030164:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77484130859375 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 114.57 1 110.02 109.52 110.52 -4.555 0 0 0 0.23508 1 21997 21997 7.9102 2.1497 1 46505 600 30927 30947 45765 45765 0.05220893508658264 TNHPARKERRE 11 Unmodified _TNHPARKERRE_ 0 0 0 ARHGAP31|p.A1199Rfs*106|1|0.34|ENSG00000031081|chr3:119415522-119415522|G/-|frameshift_variant;ENSG00000031081|ENST00000264245|ARHGAP31 ARHGAP31|p.A1199Rfs*106|1|0.34|ENSG00000031081|chr3:119415522-119415522|G/-|frameshift_variant ARHGAP31|p.A1199Rfs*106|1|0.34|ENSG00000031081|chr3:119415522-119415522|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2510986328125 3 465.251757 1392.73344 NaN NaN NaN NaN NaN NaN NaN 141.84 1 136.97 136.47 137.47 -4.8678 0 0 0 0.22632 1 27366 27366 1.4551 0 1 46506 206 30928 30948 45766 45766 0.052785020694273044 TNIIITEPY 9 Unmodified _TNIIITEPY_ 0 0 0 nc|ENSG00000075089|Q9GZN1-2|ACTR6;ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant;ENSG00000075089|ENST00000188312|ACTR6 nc|ENSG00000075089|Q9GZN1-2|ACTR6 nc|ENSG00000075089|Q9GZN1-2|ACTR6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2744140625 2 532.28714 1062.55973 0.43993 0.00023417 0.28871 0.00015367 0.72864 0.00038784 532.2870977751107 100.43 0.59355 100.43 100.13 100.73 0 48 16 4 0 0 0 0.44932 1 19716 19716 22.736 0.98964 1 5450400 46507 45 30929 30949 45767 45767 0.030949035205594555 TNIQVSTFAT 10 Unmodified _TNIQVSTFAT_ 0 0 0 REV__IMPAD1|p.P126T|1|0.32|ENSG00000104331|chr8:56993210-56993210|G/T|missense_variant REV__IMPAD1|p.P126T|1|0.32|ENSG00000104331|chr8:56993210-56993210|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2803344726562 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 25.436 1 23.902 23.402 24.402 -1.5342 0 0 0 0.22566 1 4180 4180 16.149 3.1066 1 + 46508 23658 30930 30950 45768 45768 0.008088313724329055 TNKEEKYGL 9 Unmodified _TNKEEKYGL_ 0 0 0 REV__VWF|p.N2635K|1|0.31|ENSG00000110799|chr12:5953577-5953577|A/T|missense_variant REV__VWF|p.N2635K|1|0.31|ENSG00000110799|chr12:5953577-5953577|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2806396484375 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 49.352 1 46.346 45.846 46.846 -3.0068 0 0 0 0.17061 1 9054 9054 27.629 2.2295 1 + 46509 25540 30931 30951 45769 45769 0.008088313724329055 TNKFIAVKLLL 11 Unmodified _TNKFIAVKLLL_ 0 0 0 ENST00000373840.8_1_9:123943038-123943272:-|nuORF ENST00000373840.8_1_9:123943038-123943272:-|nuORF ENST00000373840.8_1_9:123943038-123943272:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7694702148438 2 630.407924 1258.80129 0.4015 0.00025311 0.23882 0.00015055 0.64032 0.00040366 630.408082380283 90.351 0.62922 86.574 86.259 86.888 -3.7779 43 17 3 0 0 0 0.78434 2 17251 17251;17264 5.7319 0 1 4751200 46510 9206 30932 30952 45770;45771 45770 0.1822455894750874 TNKFYSGY 8 Unmodified _TNKFYSGY_ 0 0 0 REV__STK3|p.N442Ifs*2|1|0.33|ENSG00000104375|chr8:98455993-98455993|T/-|frameshift_variant REV__STK3|p.N442Ifs*2|1|0.33|ENSG00000104375|chr8:98455993-98455993|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26513671875 2 490.229625 978.444697 NaN NaN NaN NaN NaN NaN NaN 48.944 1 46.063 45.563 46.563 -2.8811 0 0 0 0.21486 1 9266 9266 12.532 0.89125 1 + 46511 14762 30933 30953 45772 45772 -0.04538780890561611 TNKNYEPN 8 Unmodified _TNKNYEPN_ 0 0 0 REV__ENST00000602224.5_1_19:35823460-35823868:+|nuORF REV__ENST00000602224.5_1_19:35823460-35823868:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640075683594 2 490.227613 978.440674 0.13496 6.6161E-05 -0.30771 -0.00015085 -0.17275 -8.4688E-05 490.2274684173461 50.727 3.2905 47.682 46.266 49.556 -3.0453 144 94 2 0 0 0 0.69713 1 9186 9186 14.838 0 1 4439400 + 46512 13329 30934 30954 45773 45773 -0.04940870384291429 TNKQNVIY 8 Unmodified _TNKQNVIY_ 0 0 0 REV__ANGPTL5|p.K229N|1|0.12|ENSG00000187151|chr11:101895039-101895039|C/A|missense_variant REV__ANGPTL5|p.K229N|1|0.12|ENSG00000187151|chr11:101895039-101895039|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2651672363281 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 49.751 1 49.751 49.251 50.251 0 0 0 0 0.23182 1 9410 9410 0.68139 0 1 + 46513 13043 30935 30955 45774 45774 0.02332883409144415 TNKQVIDY 8 Unmodified _TNKQVIDY_ 0 0 0 REV__STPG2|p.K169N|1|0.3|ENSG00000163116|chr4:98106058-98106058|C/A|missense_variant REV__STPG2|p.K169N|1|0.3|ENSG00000163116|chr4:98106058-98106058|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25555419921875 2 490.756007 979.497461 -0.024664 -1.2104E-05 -2.9441 -0.0014448 -2.9687 -0.0014569 490.7547286733734 50.188 0.52274 47.307 46.941 47.463 -2.8811 23 14 2 0 0 0 0.66066 1 9540 9540 21.747 3.6117 1 1065400 + 46514 24746 30936 30956 45775 45775 0.006891771722280282 TNKQVIDY 8 Unmodified _TNKQVIDY_ 0 0 0 REV__STPG2|p.K169N|1|0.3|ENSG00000163116|chr4:98106058-98106058|C/A|missense_variant REV__STPG2|p.K169N|1|0.3|ENSG00000163116|chr4:98106058-98106058|C/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.756007 979.497461 0.11899 5.8397E-05 -2.5928 -0.0012724 -2.4738 -0.001214 490.75500158998153 50.252 1.021 47.209 46.926 47.947 -3.043 -0.11121 -4.6872E-05 NaN 21.747 38 29 2 NaN NaN NaN NaN 0 NaN NaN 0 1952300 + 46515 24746 30936 30956 0.006891771722280282 TNLGEWSY 8 Unmodified _TNLGEWSY_ 0 0 0 REV__nc|ENSG00000160285|P48449-2|LSS REV__nc|ENSG00000160285|P48449-2|LSS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 484.7165832519531 2 485.219257 968.423961 -0.29229 -0.00014182 -0.80048 -0.00038841 -1.0928 -0.00053023 485.2191078265031 36.005 0.18192 33.611 33.52 33.701 -2.3938 6 4 2 0 0 0 0.67743 1 6632 6632 0.62683 0.62683 1 596410 + 46516 17412 30937 30957 45776 45776 -0.061513712702321754 TNLLLHFAK 9 Unmodified _TNLLLHFAK_ 0 0 0 REV__sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1 REV__sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.878662109375 3 352.878198 1055.61277 NaN NaN NaN NaN NaN NaN NaN 25.056 1 25.056 24.556 25.556 0 0 0 0 0.19657 1 4334 4334 4.897 0 1 + 46517 24723 30938 30958 45777 45777 0.08718326093890028 TNLNYSKLS 9 Unmodified _TNLNYSKLS_ 0 0 0 ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 347.1674499511719 3 347.185468 1038.53457 NaN NaN NaN NaN NaN NaN NaN 62.887 1 62.887 62.387 63.387 0 0 0 0 0.23508 1 12084 12084 2.086 0.34373 1 46518 258 30939 30959 45778 45778 0.016848487180141092 TNLPVLALLLL 11 Unmodified _TNLPVLALLLL_ 0 0 0 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant;ENSG00000165029|ENST00000374736|ABCA1 ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.267578125 2 590.389199 1178.76385 NaN NaN NaN NaN NaN NaN NaN 141.79 1 136.93 136.43 137.43 -4.8678 0 0 0 0.23698 1 27358 27358 2.4985 0 1 46519 6 30940 30960 45779 45779 0.18161467681898102 TNLRKNKK 8 Unmodified _TNLRKNKK_ 0 0 0 REV__nc|ENSG00000180481|Q4G1C9-2|GLIPR1L2 REV__nc|ENSG00000180481|Q4G1C9-2|GLIPR1L2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 501.3154296875 2 501.314358 1000.61416 NaN NaN NaN NaN NaN NaN NaN 168.98 1 164.11 163.61 164.61 -4.873 0 0 0 0.22674 1 33354 33354 14.838 0 1 + 46520 24193 30941 30961 45780 45780 0.11387960182651113 TNLYIQGDY 9 Unmodified _TNLYIQGDY_ 0 0 0 REV__KLHL1|p.T712I|1|0.21|ENSG00000150361|chr13:69707677-69707677|G/A|missense_variant REV__KLHL1|p.T712I|1|0.21|ENSG00000150361|chr13:69707677-69707677|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7702026367188 2 543.758746 1085.50294 0.26166 0.00014228 -0.20576 -0.00011189 0.055893 3.0393E-05 543.7585750208929 96.889 0.76622 92.791 92.385 93.151 -4.0978 47 21 3 0 0 0 0.034704 1 18989 18989 78.149 6.2271 1 7009700 + 46521 23724 30942 30962 45781 45781 -0.03639144035946629 TNLYIQGDY 9 Unmodified _TNLYIQGDY_ 0 0 0 REV__KLHL1|p.T712I|1|0.21|ENSG00000150361|chr13:69707677-69707677|G/A|missense_variant REV__KLHL1|p.T712I|1|0.21|ENSG00000150361|chr13:69707677-69707677|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7839965820312 2 543.758746 1085.50294 0.15468 8.4107E-05 -0.052909 -2.877E-05 0.10177 5.5337E-05 543.7586835859865 96.962 0.78553 92.727 92.338 93.124 -4.2348 54 22 3 0 0 0 0.034704 2 18534 18534;18553 78.149 2.3886 1 8210000 + 46522 23724 30942 30962 45782;45783 45782 -0.03639144035946629 TNLYIQGDY 9 Unmodified _TNLYIQGDY_ 0 0 0 REV__KLHL1|p.T712I|1|0.21|ENSG00000150361|chr13:69707677-69707677|G/A|missense_variant REV__KLHL1|p.T712I|1|0.21|ENSG00000150361|chr13:69707677-69707677|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.758746 1085.50294 0.03966 2.1566E-05 -0.10565 -5.7446E-05 -0.065986 -3.588E-05 543.7586823984241 96.643 0.69463 92.724 92.36 93.054 -3.9194 -0.020656 0.00010238 NaN 78.149 51 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7492000 + 46523 23724 30942 30962 -0.03639144035946629 TNMIHILS 8 Unmodified _TNMIHILS_ 0 0 0 REV__ENST00000394518.6_1_15:86118468-86118540:+|nuORF REV__ENST00000394518.6_1_15:86118468-86118540:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16949462890625 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 108.6 1 108.6 108.1 109.1 0 0 0 0 0.21486 1 21356 21356 1.6526 0 1 + 46524 21247 30943 30963 45784 45784 0.01814442508373304 TNMTHFTDSP 10 Unmodified _TNMTHFTDSP_ 0 0 0 REV__ENSG00000275004|ENST00000626650|ZNF280B REV__ENSG00000275004|ENST00000626650|ZNF280B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.33447265625 2 575.745313 1149.47607 -0.11334 -6.5254E-05 -0.66967 -0.00038556 -0.78301 -0.00045081 575.7452285131577 49.215 0.52726 46.334 46.132 46.66 -2.8811 26 14 2 0 0 0 0.68509 1 9330 9330 26.268 10.119 1 1674700 + 46525 19928 30944 30964 45785 45785 -0.09268575918781607 TNMVSLEGLT 10 Unmodified _TNMVSLEGLT_ 0 0 0 nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant nc|ENSG00000038382|O75962-4|TRIO nc|ENSG00000038382|O75962-4|TRIO MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2738037109375 2 532.768257 1063.52196 0.086261 4.5957E-05 2.8118 0.001498 2.8981 0.001544 532.7696847299757 96.746 1.661 96.746 96.149 97.81 0 113 47 4 0 0 0 0.39883 1 19077 19077 0.84494 0 1 19232000 46526 1182 30945 30965 45786 45786 -0.007259307365302448 TNPFRTPS 8 Unmodified _TNPFRTPS_ 0 0 0 REV__ENST00000561370.5_1_14:68048786-68054020:+|nuORF REV__ENST00000561370.5_1_14:68048786-68054020:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.235595703125 2 460.235242 918.45593 0.13523 6.2239E-05 0.070144 3.2283E-05 0.20538 9.4521E-05 460.23519803356106 54.909 0.56173 54.909 54.561 55.122 0 21 15 2 0 0 0 0.69031 1 10475 10475 15.847 0 1 785320 + 46527 23052 30946 30966 45787 45787 -0.006559587964147795 TNPFRTPS 8 Unmodified _TNPFRTPS_ 0 0 0 REV__ENST00000561370.5_1_14:68048786-68054020:+|nuORF REV__ENST00000561370.5_1_14:68048786-68054020:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23553466796875 2 460.235242 918.45593 -0.086344 -3.9739E-05 0.32173 0.00014807 0.23538 0.00010833 460.23554159284356 48.42 0.662 45.471 45.226 45.888 -2.9499 38 18 3 0 0 0 8448 1 8888 8888 0.62683 0 1 1488000 + 46528 23052 30946 30966 45788 45788 -0.006559587964147795 TNPSTQVGVSP 11 Unmodified _TNPSTQVGVSP_ 0 0 0 REV__ZNF311|p.T324Pfs*83|1|0.41|ENSG00000197935|chr6:28996032-28996032|T/-|frameshift_variant REV__ZNF311|p.T324Pfs*83|1|0.41|ENSG00000197935|chr6:28996032-28996032|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7750854492188 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 8.3739 1 7.6947 7.1947 8.1947 -0.67913 0 0 0 0.22632 1 863 863 0 0 1 + 46529 25572 30947 30967 45789 45789 -0.004043566329073656 TNQIPMLIRRK 11 Unmodified _TNQIPMLIRRK_ 0 0 0 ENSG00000114491|ENST00000232607|UMPS ENSG00000114491|ENST00000232607|UMPS ENSG00000114491|ENST00000232607|UMPS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 457.2519836425781 3 457.274734 1368.80237 NaN NaN NaN NaN NaN NaN NaN 141.55 1 141.55 141.05 142.05 0 0 0 0 0.22632 1 28204 28204 0.0059557 0 1 46530 2795 30948 30968 45790 45790 0.13272450044723882 TNQKLSAFA 9 Unmodified _TNQKLSAFA_ 0 0 0 ENSG00000198554|ENST00000360586|WDHD1;nc|ENSG00000198554|O75717-2|WDHD1;ENST00000475379.1_1_14:55408210-55411247:-|nuORF ENSG00000198554|ENST00000360586|WDHD1 ENSG00000198554|ENST00000360586|WDHD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.264404296875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 49.327 1 49.327 48.827 49.827 0 0 0 0 0.19512 1 9325 9325 0.37959 0.12811 1 46531 7459 30949 30969 45791 45791 0.02332883409144415 TNQPKALVR 9 Unmodified _TNQPKALVR_ 0 0 0 REV__nc|ENSG00000073008|P15151-3|PVR REV__nc|ENSG00000073008|P15151-3|PVR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.99725341796875 3 342.873336 1025.59818 -0.67926 -0.0002329 0.6685 0.00022921 -0.010761 -3.6895E-06 342.8735181983575 36.101 1.1003 33.707 33.127 34.228 -2.3938 47 30 2 0 0 0 0.78802 1 6574 6574 2.2828 0 1 1310100 + 46532 14296 30950 30970 45792 45792 0.08640253945759468 TNQPKALVR 9 Unmodified _TNQPKALVR_ 0 0 0 REV__nc|ENSG00000073008|P15151-3|PVR REV__nc|ENSG00000073008|P15151-3|PVR MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 342.873336 1025.59818 -0.35605 -0.00012208 0.18723 6.4197E-05 -0.16881 -5.7882E-05 342.8733800313454 33.896 1.0463 33.896 33.165 34.212 0 0.17809 -3.0071E-05 NaN 2.2828 50 29 2 NaN NaN NaN NaN 0 NaN NaN 0 1709300 + 46533 14296 30950 30970 0.08640253945759468 TNQPKALVR 9 Unmodified _TNQPKALVR_ 0 0 0 REV__nc|ENSG00000073008|P15151-3|PVR REV__nc|ENSG00000073008|P15151-3|PVR MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 342.873336 1025.59818 -0.67926 -0.0002329 0.6685 0.00022921 -0.010761 -3.6895E-06 342.8735181983575 36.101 1.1003 33.707 33.127 34.228 -2.3938 -0.010711 0.00046497 NaN 2.2828 47 30 2 NaN NaN NaN NaN 0 NaN NaN 0 1310100 + 46534 14296 30950 30970 0.08640253945759468 TNQPKALVR 9 Unmodified _TNQPKALVR_ 0 0 0 REV__nc|ENSG00000073008|P15151-3|PVR REV__nc|ENSG00000073008|P15151-3|PVR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 342.873336 1025.59818 0.14205 4.8707E-05 -0.16704 -5.7275E-05 -0.024989 -8.5679E-06 342.87318626787396 35.92 1.1108 33.668 33.09 34.201 -2.2527 -0.049927 -0.00039449 NaN 2.2828 49 31 2 NaN NaN NaN NaN 0 NaN NaN 0 1091900 + 46535 14296 30950 30970 0.08640253945759468 TNQPKALVR 9 Unmodified _TNQPKALVR_ 0 0 0 REV__nc|ENSG00000073008|P15151-3|PVR REV__nc|ENSG00000073008|P15151-3|PVR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.873336 1025.59818 -0.39172 -0.00013431 0.16156 5.5395E-05 -0.23016 -7.8915E-05 342.8733857167542 35.877 0.91102 33.6 33.246 34.157 -2.2766 -0.11745 -5.6477E-05 NaN 2.2828 48 25 2 NaN NaN NaN NaN 0 NaN NaN 0 928070 + 46536 14296 30950 30970 0.08640253945759468 TNRCKLHG 8 Unmodified _TNRCKLHG_ 0 0 0 REV__ENST00000360338.3_1_19:57802198-57802231:+|nuORF REV__ENST00000360338.3_1_19:57802198-57802231:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16937255859375 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 79.477 1 79.477 78.977 79.977 0 0 0 0 0.23899 1 15465 15465 1.3295 0 1 + 46537 20864 30951 30971 45793 45793 0.004232097999306461 TNRCKLHG 8 Unmodified _TNRCKLHG_ 0 0 0 REV__ENST00000360338.3_1_19:57802198-57802231:+|nuORF REV__ENST00000360338.3_1_19:57802198-57802231:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1645812988281 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 150.24 1 150.24 149.74 150.74 0 0 0 0 0.2396 1 30080 30080 0.30703 0 1 + 46538 20864 30951 30971 45794 45794 0.004232097999306461 TNRPLLRP 8 Unmodified _TNRPLLRP_ 0 0 0 REV__TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant REV__TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.877197265625 3 322.866293 965.577048 NaN NaN NaN NaN NaN NaN NaN 26.501 1 26.501 26.001 27.001 0 0 0 0 0.23881 1 4642 4642 0.0082765 0 1 + 46539 16863 30952 30972 45795 45795 0.09288288636901143 TNRRPHQA 8 Unmodified _TNRRPHQA_ 0 0 0 REV__ENST00000397861.6_1_17:54910427-54911098:-|nuORF REV__ENST00000397861.6_1_17:54910427-54911098:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26416015625 2 490.262656 978.51076 0.32661 0.00016012 0.91358 0.00044789 1.2402 0.00060802 490.263124562035 51.15 0.49485 51.15 50.775 51.27 0 21 13 3 0 0 0 0.71876 2 9671 9671;9685 11.64 11.64 1 18394000 + 46540 21312 30953 30973 45796;45797 45796 0.020644727948479158 TNSTPTYTY 9 Unmodified _TNSTPTYTY_ 0 0 0 sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1 sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1 sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6869506835938 2 524.235104 1046.45566 0.093638 4.9089E-05 -0.59936 -0.0003142 -0.50572 -0.00026511 524.2344892114388 121.36 0.85094 116.67 116.28 117.13 -4.6873 53 22 3 0 0 0 0.39168 1 23339 23339 2.6312 0 1 7001100 46541 25742 30954 30974 45798 45798 -0.06571423306922952 TNSVSISVI 9 Unmodified _TNSVSISVI_ 0 0 0 ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2 ENSG00000186049|ENST00000305748|KRT73 ENSG00000186049|ENST00000305748|KRT73 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2315368652344 2 460.258382 918.502212 -0.07538 -3.4694E-05 -0.014813 -6.8178E-06 -0.090193 -4.1512E-05 460.2583121007448 44.914 1.3269 42.119 41.331 42.658 -2.7949 51 37 3 0 0 0 0.71527 1 8114 8114 13.906 7.1829 1 2484200 + 46542 689 30955 30975 45799 45799 0.03970061315010298 TNTHSDYAH 9 Unmodified _TNTHSDYAH_ 0 0 0 REV__ENSG00000074803|ENST00000380993|SLC12A1 REV__ENSG00000074803|ENST00000380993|SLC12A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6853637695312 2 523.22032 1044.42609 0.01107 5.792E-06 1.2362 0.00064679 1.2472 0.00065258 523.2209186311953 54.076 1.1547 50.939 50.467 51.622 -3.1377 70 32 4 0 0 0 0.59847 1 9950 9950 0.40827 0 1 112350000 + 46543 14320 30956 30976 45800 45800 -0.09434942532425339 TNTNRSQE 8 Unmodified _TNTNRSQE_ 0 0 0 nc|ENSG00000224287|P0C860|MSL3B nc|ENSG00000224287|P0C860|MSL3B nc|ENSG00000224287|P0C860|MSL3B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.14923095703125 3 317.149305 948.426087 NaN NaN NaN NaN NaN NaN NaN 59.807 1 56.493 55.993 56.993 -3.3139 0 0 0 0.21486 1 11129 11129 1.4819 0 1 46544 12600 30957 30977 45801 45801 -0.05018942532421988 TNVAQLFSY 9 Unmodified _TNVAQLFSY_ 0 0 0 REV__OSR2|p.Y58Ifs*79|1|0.45|ENSG00000164920|chr8:98949120-98949120|G/-|frameshift_variant REV__OSR2|p.Y58Ifs*79|1|0.45|ENSG00000164920|chr8:98949120-98949120|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2657470703125 2 521.763832 1041.51311 -0.2644 -0.00013795 -2.3638 -0.0012333 -2.6282 -0.0013713 521.762656663633 84.61 0.27706 80.946 80.815 81.092 -3.6641 11 7 2 0 0 0 0.30056 1 16533 16533 1.2148 0 1 1314900 + 46545 17723 30958 30978 45802 45802 -0.00598536310712916 TNVCICIESL 10 Unmodified _TNVCICIESL_ 0 0 0 REV__ENST00000449913.6_1_5:10433951-10434029:+|nuORF REV__ENST00000449913.6_1_5:10433951-10434029:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.79296875 2 547.76466 1093.51477 0.27553 0.00015093 -0.31005 -0.00016983 -0.034514 -1.8906E-05 547.7642558103305 86.035 0.63583 82.084 81.874 82.51 -3.9503 33 17 3 0 0 0 0.10731 1 16335 16335 57.722 1.5449 1 3075000 + 46546 21791 30959 30979 45803 45803 -0.0282498660865258 TNVCICIESL 10 Unmodified _TNVCICIESL_ 0 0 0 REV__ENST00000449913.6_1_5:10433951-10434029:+|nuORF REV__ENST00000449913.6_1_5:10433951-10434029:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.76466 1093.51477 0.27553 0.00015093 -0.31005 -0.00016983 -0.034514 -1.8906E-05 547.7642558103305 86.035 0.63583 82.084 81.874 82.51 -3.9503 -0.0070454 0.00017562 NaN 57.722 33 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3075000 + 46547 21791 30959 30979 -0.0282498660865258 TNYKVINQ 8 Unmodified _TNYKVINQ_ 0 0 0 REV__EIF3H|p.D256N|1|0.08|ENSG00000147677|chr8:116648868-116648868|C/T|missense_variant REV__EIF3H|p.D256N|1|0.08|ENSG00000147677|chr8:116648868-116648868|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2652587890625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 49.897 1 47.016 46.516 47.516 -2.8811 0 0 0 0.22699 1 9457 9457 0.68139 0 1 + 46548 13795 30960 30980 45804 45804 0.02332883409144415 TNYVYLENY 9 Unmodified _TNYVYLENY_ 0 0 0 REV__ENST00000564484.5_1_16:87764169-87795686:-|nuORF REV__ENST00000564484.5_1_16:87764169-87795686:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 393.2911376953125 3 393.516995 1177.52915 -0.59534 -0.00023428 1.0628 0.00041824 0.46748 0.00018396 393.5175068732389 55.85 0.48787 52.674 52.381 52.869 -3.1761 22 13 2 0 0 0 0.87258 1 10391 10391 0.96228 0.33545 1 1254800 + 46549 14938 30961 30981 45805 45805 -0.052508748644640946 TNYVYLENY 9 Unmodified _TNYVYLENY_ 0 0 0 REV__ENST00000564484.5_1_16:87764169-87795686:-|nuORF REV__ENST00000564484.5_1_16:87764169-87795686:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 393.516995 1177.52915 -0.38934 -0.00015321 0.93726 0.00036883 0.54792 0.00021562 393.51735465522205 55.586 0.45142 52.702 52.458 52.909 -2.8837 0.014377 -5.7363E-05 NaN 0.96228 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2197900 + 46550 14938 30961 30981 -0.052508748644640946 TPAHHPPG 8 Unmodified _TPAHHPPG_ 0 0 0 ENST00000264552.13_1_19:55918184-55919114:-|nuORF;ENST00000589978.1_1_19:55915759-55919114:-|nuORF ENST00000264552.13_1_19:55918184-55919114:-|nuORF ENST00000264552.13_1_19:55918184-55919114:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 407.2054138183594 2 407.203744 812.392936 NaN NaN NaN NaN NaN NaN NaN 135.96 1 131.07 130.57 131.57 -4.8951 0 0 0 0.23749 1 26126 26126 0.12286 0 1 46551 8340 30962 30982 45806 45806 -0.02076479793811359 TPAHTSHV 8 Unmodified _TPAHTSHV_ 0 0 0 REV__ENSG00000173320|ENST00000308497|STOX2 REV__ENSG00000173320|ENST00000308497|STOX2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2510986328125 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 110.65 1 106.42 105.92 106.92 -4.2289 0 0 0 0.23749 1 21294 21294 0.0082765 0 1 + 46552 18350 30963 30983 45807 45807 -0.016205144849436692 TPAPSAGSNAG 11 Unmodified _TPAPSAGSNAG_ 0 0 0 ENSG00000160803|ENST00000368309|UBQLN4 ENSG00000160803|ENST00000368309|UBQLN4 ENSG00000160803|ENST00000368309|UBQLN4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2366027832031 2 465.219788 928.425024 -0.01474 -6.8573E-06 -1.0935 -0.0005087 -1.1082 -0.00051556 465.2208754806906 55.271 0.48007 52.133 51.972 52.452 -3.1377 17 13 2 0 0 0 0.61937 1 10253 10253 17.113 2.2746 1 1774200 46553 5270 30964 30984 45808 45808 -0.04205156901321061 TPARPQHVSPD 11 Unmodified _TPARPQHVSPD_ 0 0 0 sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1;sp|F5HIN9|TRX2_HCMVMTriplexcapsidprotein2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRX2PE=3SV=1 sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1 sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2845458984375 2 602.807094 1203.59963 0.32342 0.00019496 -1.0451 -0.00062999 -0.72168 -0.00043503 602.8065233359479 63.02 0.51641 59.763 59.471 59.988 -3.2567 33 14 3 0 0 0 0.89764 1 11783 11783 12.241 2.1667 1 2616000 46554 25744 30965 30985 45809 45809 0.0059784324387237575 TPASQQTPP 9 Unmodified _TPASQQTPP_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 464.143798828125 2 463.732532 925.45051 -0.25297 -0.00011731 0.47584 0.00022066 0.22288 0.00010336 463.7326297273262 55.886 1.0691 53.002 52.142 53.211 -2.8837 44 30 2 0 0 0 0.77732 1 10528 10528 4.3292 0 1 6149500 46555 5980 30966 30986 45810 45810 -0.015196823788983238 TPASVTSEL 9 Unmodified _TPASVTSEL_ 0 0 0 REV__nc|ENSG00000100485|Q07890-2|SOS2 REV__nc|ENSG00000100485|Q07890-2|SOS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 452.2280578613281 2 452.73474 903.454927 -0.059493 -2.6935E-05 0.19998 9.0536E-05 0.14048 6.3602E-05 452.734718796394 95.574 0.62424 91.693 91.403 92.028 -3.881 26 17 2 0 0 0 0.20132 1 18364 18364 8.9129 2.426 1 1241600 + 46556 14716 30967 30987 45811 45811 -0.0006621795599812685 TPASVTSEL 9 Unmodified _TPASVTSEL_ 0 0 0 REV__nc|ENSG00000100485|Q07890-2|SOS2 REV__nc|ENSG00000100485|Q07890-2|SOS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 452.73474 903.454927 -0.0622 -2.816E-05 0.44114 0.00019972 0.37894 0.00017156 452.73474247125193 95.631 0.6255 91.582 91.203 91.828 -4.0496 -0.055915 0.00011174 NaN 8.9129 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1425500 + 46557 14716 30967 30987 -0.0006621795599812685 TPCWMLKWKSV 11 Unmodified _TPCWMLKWKSV_ 0 0 0 REV__ENST00000491476.5_1_3:45017815-45031069:+|nuORF REV__ENST00000491476.5_1_3:45017815-45031069:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23944091796875 3 460.238521 1377.69373 NaN NaN NaN NaN NaN NaN NaN 65.543 1 65.543 65.043 66.043 0 0 0 0 0.22632 1 12641 12641 5.4027 0 1 + 46558 22320 30968 30988 45812 45812 0.019995227501340196 TPCWMLKWKSV 11 Unmodified _TPCWMLKWKSV_ 0 0 0 REV__ENST00000491476.5_1_3:45017815-45031069:+|nuORF REV__ENST00000491476.5_1_3:45017815-45031069:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2387390136719 3 460.238521 1377.69373 NaN NaN NaN NaN NaN NaN NaN 68.435 1 65.045 64.545 65.545 -3.3903 0 0 0 0.22632 1 12918 12918 5.4027 5.3968 1 + 46559 22320 30968 30988 45813 45813 0.019995227501340196 TPDDDDDDDE 10 Unmodified _TPDDDDDDDE_ 0 0 0 REV__nc|ENSG00000143061|O75054-2|IGSF3 REV__nc|ENSG00000143061|O75054-2|IGSF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32177734375 2 576.178377 1150.3422 NaN NaN NaN NaN NaN NaN NaN 163.5 1 158.46 157.96 158.96 -5.0446 0 0 0 2.8426 1 31822 31822 0 0 1 + 46560 16698 30969 30989 45814 45814 -0.2269560800129966 TPDEPWAF 8 Unmodified _TPDEPWAF_ 0 0 0 SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant;ENSG00000197157|ENST00000354725|SND1 SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2319030761719 2 481.71635 961.418148 0.06521 3.1413E-05 -1.0777 -0.00051915 -1.0125 -0.00048773 481.715766612306 130.28 0.80724 125.44 125.08 125.89 -4.8355 49 22 3 0 0 0 0.97994 1 25037 25037 5.7604 0 1 3065600 46561 7337 30970 30990 45815 45815 -0.06410469781906158 TPDESTPPP 9 Unmodified _TPDESTPPP_ 0 0 0 ENSG00000117899|ENST00000261758|MESD;nc|ENSG00000117899|Q14696-2|MESD ENSG00000117899|ENST00000261758|MESD ENSG00000117899|ENST00000261758|MESD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.3134460449219 3 314.14679 939.418542 NaN NaN NaN NaN NaN NaN NaN 34.047 1 31.729 31.229 32.229 -2.3175 0 0 0 0.23508 1 6242 6242 2.4985 0.65425 1 46562 3008 30971 30991 45816 45816 -0.053590948527016735 TPDPTVRFH 9 Unmodified _TPDPTVRFH_ 0 0 0 REV__nc|ENSG00000186377|Q8N118-2|CYP4X1 REV__nc|ENSG00000186377|Q8N118-2|CYP4X1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.072509765625 3 357.185691 1068.53524 -0.0095884 -3.4248E-06 0.13899 4.9644E-05 0.1294 4.6219E-05 357.1857002154639 40.525 1.6564 37.985 37.039 38.696 -2.5398 125 46 4 0 0 0 0.87262 1 7247 7247 5.2969 2.3016 1 14782000 + 46563 24211 30972 30992 45817 45817 0.0037168815770201036 TPDPTVRFH 9 Unmodified _TPDPTVRFH_ 0 0 0 REV__nc|ENSG00000186377|Q8N118-2|CYP4X1 REV__nc|ENSG00000186377|Q8N118-2|CYP4X1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.049560546875 3 357.185691 1068.53524 -0.58845 -0.00021019 0.69481 0.00024818 0.10636 3.799E-05 357.1859037707535 40.385 1.5127 37.895 37.053 38.565 -2.4896 114 42 3 0 0 0 0.87262 1 7266 7266 5.2969 2.0156 1 11576000 + 46564 24211 30972 30992 45818 45818 0.0037168815770201036 TPDPTVRFH 9 Unmodified _TPDPTVRFH_ 0 0 0 REV__nc|ENSG00000186377|Q8N118-2|CYP4X1 REV__nc|ENSG00000186377|Q8N118-2|CYP4X1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.185691 1068.53524 -0.4952 -0.00017688 0.65855 0.00023522 0.16335 5.8346E-05 357.18587219789885 40.679 1.5898 38.044 37.121 38.71 -2.6348 0.12727 0.00031828 NaN 5.2969 124 44 4 NaN NaN NaN NaN 0 NaN NaN 0 13103000 + 46565 24211 30972 30992 0.0037168815770201036 TPDVARAMT 9 Unmodified _TPDVARAMT_ 0 0 0 nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2508850097656 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 153.09 1 147.82 147.32 148.32 -5.2669 0 0 0 0.20628 1 29673 29673 21.747 7.165 1 46566 5842 30973 30993 45819 45819 -0.011950493596373235 TPEEEEEEEEE 11 Unmodified _TPEEEEEEEEE_ 0 0 0 EIF5B|p.N530T|1|0.18|ENSG00000158417|chr2:99376383-99376383|A/C|missense_variant;nc|ENSG00000066248|Q8N5V2-2|NGEF;nc|ENSG00000066248|Q8N5V2-3|NGEF;ENSG00000066248|ENST00000264051|NGEF EIF5B|p.N530T|1|0.18|ENSG00000158417|chr2:99376383-99376383|A/C|missense_variant EIF5B|p.N530T|1|0.18|ENSG00000158417|chr2:99376383-99376383|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2345275878906 3 460.172058 1377.49434 NaN NaN NaN NaN NaN NaN NaN 11.774 1 10.645 10.145 11.145 -1.1293 0 0 0 0.22632 1 1414 1414 0 0 1 46567 935 30974 30994 45820 45820 -0.17930252044379813 TPEIIHAQQ 9 Unmodified _TPEIIHAQQ_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.15057373046875 3 346.185579 1035.53491 NaN NaN NaN NaN NaN NaN NaN 126.18 1 121.59 121.09 122.09 -4.5984 0 0 0 0.23508 1 24878 24878 4.5289 1.7937 1 46568 6829 30975 30995 45821 45821 0.018562684378366612 TPEIPNELSS 10 Unmodified _TPEIPNELSS_ 0 0 0 nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1;ENSG00000204104|ENST00000373327|TRAF3IP1 nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1 nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7890014648438 2 543.769311 1085.52407 NaN NaN NaN NaN NaN NaN NaN 25.97 1 24.335 23.835 24.835 -1.6347 0 0 0 2.8426 1 4293 4293 0.26539 0 1 46569 7560 30976 30996 45822 45822 -0.015271787270876303 TPEKGRPFY 9 Unmodified _TPEKGRPFY_ 0 0 0 nc|ENSG00000148498|Q8TEW0-5|PARD3;nc|ENSG00000148498|Q8TEW0-3|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3 nc|ENSG00000148498|Q8TEW0-5|PARD3 nc|ENSG00000148498|Q8TEW0-5|PARD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7852783203125 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 59.721 1 59.721 59.221 60.221 0 0 0 0 0.21844 1 11442 11442 18.146 1.0335 1 46570 4748 30977 30997 45823 45823 0.012608588175226032 TPELPAPP 8 Unmodified _TPELPAPP_ 0 0 0 nc|ENSG00000176155|Q2TAC2|CCDC57;ENSG00000176155|ENST00000694881|CCDC57 nc|ENSG00000176155|Q2TAC2|CCDC57 nc|ENSG00000176155|Q2TAC2|CCDC57 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.0878601074219 2 411.223811 820.433069 NaN NaN NaN NaN NaN NaN NaN 48.905 1 45.898 45.398 46.398 -3.0068 0 0 0 0.21486 1 8959 8959 5.7604 0 1 46571 6451 30978 30998 45824 45824 0.015670220860897643 TPEMAPVPV 9 Unmodified _TPEMAPVPV_ 0 0 0 ENST00000464395.1_1_10:3185767-3189991:-|nuORF ENST00000464395.1_1_10:3185767-3189991:-|nuORF ENST00000464395.1_1_10:3185767-3189991:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.16497802734375 3 314.165128 939.473554 NaN NaN NaN NaN NaN NaN NaN 30.608 1 28.534 28.034 29.034 -2.0743 0 0 0 0.23508 1 5247 5247 1.1933 0 1 46572 10111 30979 30999 45825 45825 0.0013962041421109461 TPFAWKHSL 9 Unmodified _TPFAWKHSL_ 0 0 0 ENST00000472013.1_1_1:42922230-42922863:+|nuORF ENST00000472013.1_1_1:42922230-42922863:+|nuORF ENST00000472013.1_1_1:42922230-42922863:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77099609375 2 543.790184 1085.56581 0.1991 0.00010827 4.1184 0.0022395 4.3175 0.0023478 543.793453429122 159.87 0.14261 154.64 154.52 154.66 -5.2299 6 3 2 0 0 0 0.72864 1 31013 31013 7.2892 0 1 797520 46573 10218 30980 31000 45826 45826 0.026454665427536384 TPFDPGKIYN 10 Unmodified _TPFDPGKIYN_ 0 0 0 REV__tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1 REV__tr|U7T2L6|U7T2L6_FUSNUDNAgyrasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gyrAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.32275390625 2 576.290214 1150.56587 NaN NaN NaN NaN NaN NaN NaN 62.045 1 62.045 61.545 62.545 0 0 0 0 0.20365 1 11907 11907 27.629 2.6378 1 + 46574 25336 30981 31001 45827 45827 -0.0033857824789720325 TPFDYDVYQ 9 Unmodified _TPFDYDVYQ_ 0 0 0 REV__nc|ENSG00000087303|Q14112-2|NID2 REV__nc|ENSG00000087303|Q14112-2|NID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 383.1814880371094 3 383.169595 1146.48696 -0.26137 -0.00010015 0.30663 0.00011749 0.045259 1.7342E-05 383.16965745966735 67.58 0.82939 64.471 64.001 64.831 -3.1086 28 23 2 0 0 0 0.77797 1 13036 13036 2.7352 0 1 1000200 + 46575 14502 30982 31002 45828 45828 -0.08042850272863689 TPFHEMIIH 9 Unmodified _TPFHEMIIH_ 0 0 0 REV__ENST00000483871.6_1_20:42089718-42089748:+|nuORF REV__ENST00000483871.6_1_20:42089718-42089748:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1182556152344 3 375.523427 1123.54845 0.34686 0.00013025 -0.3676 -0.00013804 -0.020735 -7.7863E-06 375.5233804573608 29.898 1.1562 28.005 27.015 28.171 -1.8928 51 32 3 0 0 0 0.87918 1 4985 4985 1.0715 0 1 1030500 + 46576 22206 30983 31003 45829 45829 -0.008381970545542572 TPFPHPPG 8 Unmodified _TPFPHPPG_ 0 0 0 ENST00000360472.8_1_1:160183301-160183379:+|nuORF ENST00000360472.8_1_1:160183301-160183379:+|nuORF ENST00000360472.8_1_1:160183301-160183379:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2159423828125 2 425.216321 848.418088 NaN NaN NaN NaN NaN NaN NaN 97.643 1 93.545 93.045 94.045 -4.0978 0 0 0 0.21486 1 19163 19163 5.7604 0 1 46577 9013 30984 31004 45830 45830 -0.012184249912479572 TPFTFFAV 8 Unmodified _TPFTFFAV_ 0 0 0 ENSG00000173838|ENST00000311269|MARCHF10 ENSG00000173838|ENST00000311269|MARCHF10 ENSG00000173838|ENST00000311269|MARCHF10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2410583496094 2 465.242004 928.469455 -0.15134 -7.0408E-05 -0.83416 -0.00038809 -0.9855 -0.0004585 465.2415150200904 69.531 0.46107 66.351 66.188 66.649 -3.1796 16 12 2 0 0 0 8448 1 13512 13512 6.1918 0 1 1823400 46578 6314 30985 31005 45831 45831 0.0023589898280533816 TPGENISKKL 10 Unmodified _TPGENISKKL_ 0 0 0 ENST00000395834.5_1_14:50796549-50796777:-|nuORF ENST00000395834.5_1_14:50796549-50796777:-|nuORF ENST00000395834.5_1_14:50796549-50796777:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7835693359375 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 128.8 1 124.06 123.56 124.56 -4.7408 0 0 0 0.22544 1 24784 24784 19.257 4.0085 1 46579 9435 30986 31006 45832 45832 0.06869397160471635 TPGFPLHSV 9 Unmodified _TPGFPLHSV_ 0 0 0 REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7275390625 2 477.75581 953.497067 -0.10137 -4.8429E-05 0.24444 0.00011678 0.14307 6.8353E-05 477.75584668893777 111.73 0.79927 111.73 111.38 112.18 0 33 22 2 0 0 0 0.48644 1 21973 21973 20.454 2.3186 1 1104400 + 46580 21881 30987 31007 45833 45833 0.018458022430422716 TPGFPLHSV 9 Unmodified _TPGFPLHSV_ 0 0 0 REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.75581 953.497067 -0.10137 -4.8429E-05 0.24444 0.00011678 0.14307 6.8353E-05 477.75584668893777 111.73 0.79927 111.73 111.38 112.18 0 0.16322 0.00019038 NaN 20.454 33 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1104400 + 46581 21881 30987 31007 0.018458022430422716 TPGFPLHSV 9 Unmodified _TPGFPLHSV_ 0 0 0 REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.75581 953.497067 0.057987 2.7703E-05 -0.011106 -5.3058E-06 0.046881 2.2398E-05 477.7557497315143 115.99 0.65926 111.5 111.24 111.9 -4.486 -0.064249 -5.3797E-05 NaN 20.454 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1787800 + 46582 21881 30987 31007 0.018458022430422716 TPGFPLHSV 9 Unmodified _TPGFPLHSV_ 0 0 0 REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF REV__ENST00000460766.5_1_2:131100637-131104038:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.75581 953.497067 0.2603 0.00012436 -0.072537 -3.4655E-05 0.18777 8.9706E-05 477.7556370955547 116.05 0.57678 111.47 111.19 111.77 -4.5815 -0.098974 -0.0001125 NaN 20.454 28 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1448900 + 46583 21881 30987 31007 0.018458022430422716 TPGILIWY 8 Unmodified _TPGILIWY_ 0 0 0 REV__SLC44A5|p.L249P|1|0.3|ENSG00000137968|chr1:75234093-75234093|A/G|missense_variant REV__SLC44A5|p.L249P|1|0.3|ENSG00000137968|chr1:75234093-75234093|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7727355957031 2 481.770929 961.527304 NaN NaN NaN NaN NaN NaN NaN 113.32 1 108.79 108.29 109.29 -4.5259 0 0 0 0.21486 1 21752 21752 11.114 1.767 1 + 46584 24646 30988 31008 45834 45834 0.04500160908230555 TPGSCCCSSTT 11 Unmodified _TPGSCCCSSTT_ 0 0 0 ENST00000571875.2_1_17:1958394-1960072:+|nuORF ENST00000571875.2_1_17:1958394-1960072:+|nuORF ENST00000571875.2_1_17:1958394-1960072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6837158203125 2 523.68301 1045.35147 NaN NaN NaN NaN NaN NaN NaN 32.125 1 30.099 29.599 30.599 -2.0264 0 0 0 0.22632 1 5565 5565 0.00056442 0 1 46585 11426 30989 31009 45835 45835 -0.16939532721971773 TPGSKGSK 8 Unmodified _TPGSKGSK_ 0 0 0 ENST00000461489.1_1_6:55933831-55939077:-|nuORF;nc|ENSG00000124749|Q96P44-2|COL21A1;ENST00000488912.5_1_6:55922457-55942902:-|nuORF;COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant;COL21A1|p.E790Dfs*24|1|0.04|ENSG00000124749|chr6:56060778-56060779|-/AGAGGATATAAGTGAGGTGAAGAAGAAAACAGATAACA|frameshift_variant;COL21A1|p.G902Mfs*52|1|0.44|ENSG00000124749|chr6:56057828-56057829|-/GGAGGGCCCTCTGGACCTAAGATGGGACATT|frameshift_variant;nc|ENSG00000124749|Q96P44-3|COL21A1;ENSG00000124749|ENST00000244728|COL21A1 REV__ENST00000518253.5_1_6:90312741-90340720:+|nuORF REV__ENST00000518253.5_1_6:90312741-90340720:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.210205078125 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 48.832 1 45.963 45.463 46.463 -2.869 0 0 0 0.23366 1 9243 9243 0.0082765 0 1 46586 13065 30990 31010 45836 45836 0.01812967283535727 TPGYAFVTANY 11 Unmodified _TPGYAFVTANY_ 0 0 0 REV__KIF19|p.H272Tfs*16|1|0.15|ENSG00000196169|chr17:74346412-74346412|C/-|frameshift_variant REV__KIF19|p.H272Tfs*16|1|0.15|ENSG00000196169|chr17:74346412-74346412|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2901000976562 2 602.287671 1202.56079 NaN NaN NaN NaN NaN NaN NaN 26.916 1 25.134 24.634 25.634 -1.7821 0 0 0 0.2367 1 4765 4765 2.9952 0.69251 1 + 46587 19223 30991 31011 45837 45837 -0.03238882110508712 TPGYEECY 8 Unmodified _TPGYEECY_ 0 0 0 ENST00000579585.5_1_17:61771490-61771586:+|nuORF ENST00000579585.5_1_17:61771490-61771586:+|nuORF ENST00000579585.5_1_17:61771490-61771586:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2524719238281 2 481.184026 960.353498 NaN NaN NaN NaN NaN NaN NaN 143.94 1 138.87 138.37 139.37 -5.0671 0 0 0 0.21486 1 27754 27754 5.7604 0 1 46588 11486 30992 31012 45838 45838 -0.12826412650213115 TPHHTPPS 8 Unmodified _TPHHTPPS_ 0 0 0 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300 EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2165222167969 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 118.05 1 113.64 113.14 114.14 -4.4088 0 0 0 0.21486 1 22718 22718 9.3474 0.75416 1 46589 1969 30993 31013 45839 45839 -0.027245144849530334 TPHLRTAGLW 10 Unmodified _TPHLRTAGLW_ 0 0 0 ENST00000529986.5_1_11:57529333-57561533:+|nuORF ENST00000529986.5_1_11:57529333-57561533:+|nuORF ENST00000529986.5_1_11:57529333-57561533:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3128051757812 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 72.298 1 68.67 68.17 69.17 -3.6275 0 0 0 0.22588 1 13652 13652 7.1017 0.37856 1 46590 10952 30994 31014 45840 45840 0.055439428370846144 TPIMIKLI 8 Unmodified _TPIMIKLI_ 0 0 0 REV__tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1 REV__tr|U7T0S8|U7T0S8_FUSNUCitratetransporter-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00632PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1709899902344 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 137.55 1 132.71 132.21 133.21 -4.84 0 0 0 0.21486 1 26501 26501 0.40072 0 1 + 46591 25275 30995 31015 45841 45841 0.1160225110435249 TPIQQLDT 8 Unmodified _TPIQQLDT_ 0 0 0 REV__ENSG00000232125|ENST00000452335|DYTN REV__ENSG00000232125|ENST00000452335|DYTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2320251464844 2 458.242732 914.470912 0.30321 0.00013895 0.49559 0.0002271 0.7988 0.00036605 458.2430133777562 28.388 1.8803 28.388 27.801 29.681 0 155 53 5 0 0 0 8448 2 5133 5133;5286 20.454 16.861 1 86017000 + 46592 19749 30996 31016 45842;45843 45842 0.010254882808908405 TPIQQLDT 8 Unmodified _TPIQQLDT_ 0 0 0 REV__ENSG00000232125|ENST00000452335|DYTN REV__ENSG00000232125|ENST00000452335|DYTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23284912109375 2 458.242732 914.470912 0.54107 0.00024794 -0.16533 -7.5762E-05 0.37574 0.00017218 458.2426248242289 30.327 1.7832 28.252 27.556 29.339 -2.0743 150 50 5 0 0 0 8448 2 5301 5301;5361 20.454 3.3407 1 61841000 + 46593 19749 30996 31016 45844;45845 45844 0.010254882808908405 TPITTTITV 9 Unmodified _TPITTTITV_ 0 0 0 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1756896972656 3 316.186697 945.538263 NaN NaN NaN NaN NaN NaN NaN 41.582 1 39.092 38.592 39.592 -2.4896 0 0 0 0.23508 1 7465 7465 2.4985 0.65425 1 46594 12553 30997 31017 45846 45846 0.06331518491845145 TPKKESLA 8 Unmodified _TPKKESLA_ 0 0 0 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21502685546875 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 161.1 1 156.31 155.81 156.81 -4.7952 0 0 0 0.21486 1 32039 32039 5.7604 1.0044 1 + 46595 18324 30998 31018 45847 45847 0.05538382523184282 TPKKNKHKR 9 Unmodified _TPKKNKHKR_ 0 0 0 ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A ENST00000478196.6_1_2:55459960-55462152:+|nuORF ENST00000478196.6_1_2:55459960-55462152:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 569.3551025390625 2 568.854181 1135.69381 0.18371 0.0001045 -0.99368 -0.00056526 -0.80997 -0.00046076 568.8535913175419 168.82 0.24271 163.89 163.76 164 -4.9295 9 6 2 0 0 0 0.49624 1 33308 33308 0.029283 0 1 10708000 46596 4532 30999 31019 45848 45848 0.13139026856629243 TPKKSPES 8 Unmodified _TPKKSPES_ 0 0 0 REV__ENST00000305135.9_1_3:183432942-183435501:+|nuORF REV__ENST00000305135.9_1_3:183432942-183435501:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2234191894531 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 68.201 1 68.201 67.701 68.701 0 0 0 0 0.22934 1 13185 13185 0.62683 0 1 + 46597 20432 31000 31020 45849 45849 0.019015056264720442 TPKKSPES 8 Unmodified _TPKKSPES_ 0 0 0 REV__ENST00000305135.9_1_3:183432942-183435501:+|nuORF REV__ENST00000305135.9_1_3:183432942-183435501:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2362976074219 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 81.457 1 77.769 77.269 78.269 -3.6879 0 0 0 0.21323 1 15522 15522 14.582 1.0738 1 + 46598 20432 31000 31020 45850 45850 0.019015056264720442 TPKPGYFGL 9 Unmodified _TPKPGYFGL_ 0 0 0 ENSG00000156959|ENST00000287585|LHFPL4 ENSG00000156959|ENST00000287585|LHFPL4 ENSG00000156959|ENST00000287585|LHFPL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2641906738281 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 67.866 1 67.866 67.366 68.366 0 0 0 0 0.18755 1 13119 13119 2.6312 0 1 46599 5112 31001 31021 45851 45851 0.027349729028628644 TPKPSTPPP 9 Unmodified _TPKPSTPPP_ 0 0 0 REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.54119873046875 2 461.255643 920.496732 0.073514 3.3909E-05 0.16653 7.6814E-05 0.24005 0.00011072 461.25560355605296 61.884 0.6684 58.514 58.253 58.922 -3.3694 34 18 2 0 0 0 0.54354 1 11553 11553 16.942 1.0951 1 1335400 + 46600 19033 31002 31022 45852 45852 0.033303825231769224 TPKPSTPPP 9 Unmodified _TPKPSTPPP_ 0 0 0 REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant REV__PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.54315185546875 2 461.255643 920.496732 0.19665 9.0704E-05 0.23191 0.00010697 0.42856 0.00019767 461.25579237391486 61.727 0.93573 58.488 58.137 59.073 -3.2395 41 26 2 0 0 0 0.79204 1 11582 11582 16.942 6.1184 1 1807400 + 46601 19033 31002 31022 45853 45853 0.033303825231769224 TPKVPAHCSVL 11 Unmodified _TPKVPAHCSVL_ 0 0 0 ENST00000512062.5_1_16:69496477-69496735:+|nuORF ENST00000512062.5_1_16:69496477-69496735:+|nuORF ENST00000512062.5_1_16:69496477-69496735:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.314697265625 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 168.36 1 163.42 162.92 163.92 -4.948 0 0 0 0.21513 1 33188 33188 15.248 1.3424 1 46602 10752 31003 31023 45854 45854 0.047580475252971155 TPLLLLLLL 9 Unmodified _TPLLLLLLL_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ADAM33|p.A455Pfs*14|1|0.31|ENSG00000149451|chr20:3672575-3672575|C/-|frameshift_variant REV__CON__ENSEMBL:ENSBTAP00000024146;nc|ENSG00000149451|Q9BZ11-2|ADAM33;REV__ENSG00000182885|ENST00000333493|ADGRG3;REV__nc|ENSG00000167925|Q8N2G8-2|GHDC nc|ENSG00000149451|Q9BZ11-2|ADAM33 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.9075622558594 3 336.907095 1007.69945 NaN NaN NaN NaN NaN NaN NaN 10.523 1 9.6193 9.1193 10.119 -0.90401 0 0 0 0.19635 1 1323 1323 0 0 1 + 46603 4792;13508;18807;17980 31004 31024 45855 45855 0.1959131259576452 TPLLPLELG 9 Unmodified _TPLLPLELG_ 0 0 0 REV__ENST00000478085.5_1_22:40805026-40805658:+|nuORF REV__ENST00000478085.5_1_22:40805026-40805658:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.19598388671875 3 318.195304 951.564084 NaN NaN NaN NaN NaN NaN NaN 116.05 1 116.05 115.55 116.55 0 0 0 0 0.23508 1 22849 22849 1.0715 0 1 + 46604 22134 31005 31025 45856 45856 0.08636412734131227 TPLNRHIYSE 10 Unmodified _TPLNRHIYSE_ 0 0 0 REV__ENST00000511153.5_3_4:16004971-16040619:-|nuORF REV__ENST00000511153.5_3_4:16004971-16040619:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 411.1169128417969 3 410.547288 1228.62004 -0.098729 -4.0533E-05 0.28835 0.00011838 0.18962 7.7848E-05 410.8817810019865 67.616 0.34971 64.29 64.104 64.454 -3.3268 12 9 2 0 0 0 0.91149 1 12757 12757 1.7423 1.7423 1 830400 + 46605 13882 31006 31026 45857 45857 0.014870139036474939 TPLNSAFAKN 10 Unmodified _TPLNSAFAKN_ 0 0 0 REV__ENSG00000063169|ENST00000594866|BICRA REV__ENSG00000063169|ENST00000594866|BICRA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.28662109375 2 531.782556 1061.55056 0.2898 0.00015411 -0.21436 -0.00011399 0.075442 4.0119E-05 531.7824355645753 41.574 0.8128 41.574 41.305 42.117 0 72 22 4 0 0 0 0.57807 1 7750 7750 20.415 3.3016 1 20259000 + 46606 14157 31007 31027 45858 45858 0.022245549549097632 TPLPAPPG 8 Unmodified _TPLPAPPG_ 0 0 0 ENST00000425358.2_1_7:27135859-27138700:+|nuORF;ENST00000434063.3_1_7:27135859-27139525:+|nuORF ENST00000425358.2_1_7:27135859-27138700:+|nuORF ENST00000425358.2_1_7:27135859-27138700:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2116394042969 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 86.627 1 86.627 86.127 87.127 0 0 0 0 0.23366 1 16907 16907 0.12286 0 1 46607 9714 31008 31028 45859 45859 0.02767056777236121 TPLPLVPL 8 Unmodified _TPLPLVPL_ 0 0 0 REV__ENST00000478423.6_1_1:5964753-5964852:-|nuORF REV__ENST00000478423.6_1_1:5964753-5964852:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.246337890625 2 425.275847 848.537141 NaN NaN NaN NaN NaN NaN NaN 153.44 1 148.67 148.17 149.17 -4.7684 0 0 0 0.2396 1 30494 30494 0.30703 0 1 + 46608 22141 31009 31029 45860 45860 0.10681348913601596 TPLQDTVTS 9 Unmodified _TPLQDTVTS_ 0 0 0 nc|ENSG00000155657|Q8WZ42-6|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.M4154Nfs*4|1|0.21|ENSG00000155657|chr2:178739821-178739822|-/T|frameshift_variant;TTN|p.T4116Sfs*25|1|0.04|ENSG00000155657|chr2:178739937-178739938|-/CTATTATATATGAGGAA|frameshift_variant;TTN|p.P4036Qfs*14|1|0.19|ENSG00000155657|chr2:178740175-178740175|G/-|frameshift_variant;TTN|p.I3592Lfs*36|1|0.25|ENSG00000155657|chr2:178741508-178741508|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant nc|ENSG00000155657|Q8WZ42-6|TTN;ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2341613769531 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 64.032 1 64.032 63.532 64.532 0 0 0 0 0.1599 1 12322 12322 29.082 0 1 46609 5053;26536;12390 31010 31030 45861 45861 -0.005428329272717747 TPLQFRSL 8 Unmodified _TPLQFRSL_ 0 0 0 REV__ENST00000520388.5_1_5:78417029-78417170:-|nuORF REV__ENST00000520388.5_1_5:78417029-78417170:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7790832519531 2 481.276909 960.539266 -0.24277 -0.00011684 0.50743 0.00024421 0.26466 0.00012737 481.277128205733 57.277 1.9408 57.277 56.536 58.477 0 96 55 2 0 0 0 0.66265 1 11082 11082 18.135 1.1927 1 1919100 + 46610 22635 31011 31031 45862 45862 0.05741777651417124 TPLQKRFR 8 Unmodified _TPLQKRFR_ 0 0 0 ENSG00000135249|ENST00000257700|RINT1 ENSG00000135249|ENST00000257700|RINT1 ENSG00000135249|ENST00000257700|RINT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.5506286621094 3 349.213692 1044.61925 -1.5493 -0.00054103 0.048576 1.6963E-05 -1.5007 -0.00052406 349.21369754650766 20.468 0.56108 18.833 18.57 19.131 -1.6351 56 15 5 0 0 0 8448 1 3143 3143 6.2058 0 1 27448000 46611 3909 31012 31032 45863 45863 0.0987226404527064 TPMKNGGG 8 Unmodified _TPMKNGGG_ 0 0 0 ENST00000554578.5_1_12:57637929-57638930:-|nuORF ENST00000554578.5_1_12:57637929-57638930:-|nuORF ENST00000554578.5_1_12:57637929-57638930:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2120666503906 2 381.184163 760.353773 NaN NaN NaN NaN NaN NaN NaN 48.797 1 45.791 45.291 46.291 -3.0068 0 0 0 0.23366 1 8935 8935 0.0082765 0 1 46612 11221 31013 31033 45864 45864 -0.035989481396882184 TPMPHAAE 8 Unmodified _TPMPHAAE_ 0 0 0 REV__RBMXL3|p.G692Afs*282|1|0.46|ENSG00000175718|chrX:115191512-115191512|G/-|frameshift_variant REV__RBMXL3|p.G692Afs*282|1|0.46|ENSG00000175718|chrX:115191512-115191512|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 427.139892578125 2 427.19727 852.379988 NaN NaN NaN NaN NaN NaN NaN 41.026 1 41.026 40.526 41.526 0 0 0 0 0.21486 1 7645 7645 5.2307 0 1 + 46613 24553 31014 31034 45865 45865 -0.052106789682284216 TPNFKYAQL 9 Unmodified _TPNFKYAQL_ 0 0 0 ENSG00000166840|ENST00000532726|GLYATL1;ENST00000534119.1_1_11:58715222-58723497:+|nuORF;nc|ENSG00000166840|Q969I3-2|GLYATL1;ENSG00000255151|ENST00000527482|GLYATL1B ENSG00000166840|ENST00000532726|GLYATL1 ENSG00000166840|ENST00000532726|GLYATL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2711791992188 2 541.287474 1080.5604 0.12563 6.8005E-05 -0.17768 -9.6177E-05 -0.052047 -2.8172E-05 541.2872295151745 136.97 0.69952 132.05 131.67 132.37 -4.9215 51 19 3 0 0 0 0.12935 1 26353 26353 6.4869 0 1 6431000 46614 5752 31015 31035 45866 45866 0.023337429602634074 TPPFLGLAN 9 Unmodified _TPPFLGLAN_ 0 0 0 REV__ENSG00000136231|ENST00000258729|IGF2BP3 REV__ENSG00000136231|ENST00000258729|IGF2BP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2585144042969 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 126.84 1 126.84 126.34 127.34 0 0 0 0 0.20628 1 25035 25035 21.747 3.6117 1 + 46615 16318 31016 31036 45867 45867 0.034706863857991266 TPPGGPGG 8 Unmodified _TPPGGPGG_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 320.1585693359375 2 320.158471 638.30239 NaN NaN NaN NaN NaN NaN NaN 166.47 1 166.47 165.97 166.97 0 0 0 0 0.2396 1 33916 33916 0 0 1 46616 980 31017 31037 45868 45868 -0.031229488420876805 TPPKGHVEP 9 Unmodified _TPPKGHVEP_ 0 0 0 ENSG00000164978|ENST00000379158|NUDT2;NUDT2|p.T90Qfs*9|1|0.13|ENSG00000164978|chr9:34343261-34343261|A/-|frameshift_variant ENSG00000164978|ENST00000379158|NUDT2 ENSG00000164978|ENST00000379158|NUDT2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2355041503906 2 481.258717 960.50288 NaN NaN NaN NaN NaN NaN NaN 49.244 1 46.237 45.737 46.737 -3.0068 0 0 0 0.23508 1 9030 9030 11.64 2.2929 1 46617 5584 31018 31038 45869 45869 0.021049007547162546 TPPPAHAAGP 10 Unmodified _TPPPAHAAGP_ 0 0 0 REV__ENST00000476941.5_1_3:142442973-142443402:+|nuORF REV__ENST00000476941.5_1_3:142442973-142443402:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386474609375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 77.853 1 77.853 77.353 78.353 0 0 0 0 0.22588 1 15145 15145 10.824 0.64053 1 + 46618 22110 31019 31039 45870 45870 0.00036345066178000707 TPPPETGEL 9 Unmodified _TPPPETGEL_ 0 0 0 ENSG00000174326|ENST00000574600|SLC16A11;nc|ENSG00000174326|Q8NCK7|SLC16A11 ENSG00000174326|ENST00000574600|SLC16A11 ENSG00000174326|ENST00000574600|SLC16A11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.15948486328125 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 88.317 1 84.525 84.025 85.025 -3.7926 0 0 0 0.23508 1 17277 17277 8.1555 0 1 46619 6341 31020 31040 45871 45871 -0.01722217955978067 TPPPGAPA 8 Unmodified _TPPPGAPA_ 0 0 0 ENSG00000124827|ENST00000379491|GCM2;GCM2|p.A398Cfs*6|1|0.45|ENSG00000124827|chr6:10874325-10874326|-/G|frameshift_variant ENSG00000124827|ENST00000379491|GCM2 ENSG00000124827|ENST00000379491|GCM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 354.18536376953125 2 354.189771 706.36499 NaN NaN NaN NaN NaN NaN NaN 100.14 1 95.985 95.485 96.485 -4.1594 0 0 0 0.23664 1 19678 19678 3.2813 0 1 46620 3336 31021 31041 45872 45872 6.1972260937182E-05 TPPPGAPA 8 Unmodified _TPPPGAPA_ 0 0 0 ENSG00000124827|ENST00000379491|GCM2;GCM2|p.A398Cfs*6|1|0.45|ENSG00000124827|chr6:10874325-10874326|-/G|frameshift_variant ENSG00000124827|ENST00000379491|GCM2 ENSG00000124827|ENST00000379491|GCM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 354.2038269042969 2 354.189771 706.36499 NaN NaN NaN NaN NaN NaN NaN 100.25 1 96.093 95.593 96.593 -4.1594 0 0 0 0.22847 1 19701 19701 10.074 3.8681 1 46621 3336 31021 31041 45873 45873 6.1972260937182E-05 TPPPLLLLLL 10 Unmodified _TPPPLLLLLL_ 0 0 0 NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENSG00000110076|ENST00000265459|NRXN2;ENST00000466324.1_1_11:64444212-64481216:-|nuORF;nc|ENSG00000110076|Q9P2S2-2|NRXN2 NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;nc|ENSG00000110076|Q9P2S2-2|NRXN2 nc|ENSG00000110076|Q9P2S2-2|NRXN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.896728515625 3 363.914249 1088.72092 NaN NaN NaN NaN NaN NaN NaN 9.7244 1 9.7244 9.2244 10.224 0 0 0 0 0.22588 1 1155 1155 0 0 1 46622 2561;12280 31022 31042 45874 45874 0.18010697624504246 TPPPPAGL 8 Unmodified _TPPPPAGL_ 0 0 0 REV__WIPF3|p.P25T|1|0.08|ENSG00000122574|chr7:29834797-29834797|C/A|missense_variant REV__WIPF3|p.P25T|1|0.08|ENSG00000122574|chr7:29834797-29834797|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2161865234375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 176.65 1 171.86 171.36 172.36 -4.7898 0 0 0 0.21486 1 36123 36123 0.79363 0 1 + 46623 25542 31023 31043 45875 45875 0.027670567772474897 TPPPPGTAI 9 Unmodified _TPPPPGTAI_ 0 0 0 nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;TP73|p.Y487Tfs*11|1|0.33|ENSG00000078900|chr1:3731034-3731034|C/-|frameshift_variant;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73 nc|ENSG00000078900|O15350-10|TP73 nc|ENSG00000078900|O15350-10|TP73 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2354736328125 2 425.737086 849.459619 -0.014255 -6.0688E-06 0.26428 0.00011252 0.25003 0.00010645 425.73712962276267 48.707 1.2948 45.708 45.017 46.312 -2.999 58 36 2 0 0 0 0.36689 1 8898 8898 26.884 0 1 2037400 46624 12237 31024 31044 45876 45876 0.028867109774296296 TPPPPGTAI 9 Unmodified _TPPPPGTAI_ 0 0 0 nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;TP73|p.Y487Tfs*11|1|0.33|ENSG00000078900|chr1:3731034-3731034|C/-|frameshift_variant;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73 nc|ENSG00000078900|O15350-10|TP73 nc|ENSG00000078900|O15350-10|TP73 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 425.737086 849.459619 0.42922 0.00018273 -0.54996 -0.00023414 -0.12074 -5.1403E-05 425.73662231395207 45.914 0.24266 45.914 45.864 46.107 0 0.10318 -0.00060161 NaN 26.884 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 627450 46625 12237 31024 31044 0.028867109774296296 TPPPPPPPP 9 Unmodified _TPPPPPPPP_ 0 0 0 ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1;DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant;DIAPH1|p.P703Hfs*65|2|0.51|ENSG00000131504|chr5:141573742-141573742|G/-|frameshift_variant;ENSG00000152409|ENST00000396137|JMY;NYAP1|p.V572Cfs*2|2|0.43|ENSG00000166924|chr7:100489429-100489429|G/-|frameshift_variant;INF2|p.P438Lfs*120|1|1.0|ENSG00000203485|chr14:104707576-104707576|C/-|frameshift_variant;INF2|p.P472Qfs*86|1|0.43|ENSG00000203485|chr14:104707676-104707676|C/-|frameshift_variant;INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant;ENST00000361875.7_1_3:150126647-150126773:+|nuORF;ENST00000557932.5_1_15:102513813-102516466:+|nuORF;ENST00000400706.3_1_12:88275-90926:+|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;ZFHX4|p.R2647Gfs*44|1|0.25|ENSG00000091656|chr8:76854854-76854854|A/-|frameshift_variant;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.D2246*|1|0.34|ENSG00000091656|chr8:76853650-76853651|-/T|frameshift_variant;ZFHX4|p.P2056Hfs*26|1|0.19|ENSG00000091656|chr8:76853081-76853084|CCTC/-|frameshift_variant;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ZFHX4|p.I2143Nfs*7|1|0.31|ENSG00000091656|chr8:76853343-76853344|-/A|frameshift_variant;ZFHX4|p.P2057Hfs*26|2|0.17|ENSG00000091656|chr8:76853084-76853084|C/-|frameshift_variant;ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant;ENST00000360982.2_1_2:183902874-183903513:-|nuORF;ENSG00000151612|ENST00000508784|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;MYO16|p.A1585Rfs*18|2|0.37|ENSG00000041515|chr13:109141025-109141025|C/-|frameshift_variant;nc|ENSG00000103067|Q9H6T0|ESRP2;ENSG00000103067|ENST00000473183|ESRP2;NYAP1|p.R745Gfs*10|1|0.38|ENSG00000166924|chr7:100491057-100491057|C/-|frameshift_variant;ENSG00000166924|ENST00000300179|NYAP1;nc|ENSG00000166924|Q6ZVC0-2|NYAP1;ENSG00000170807|ENST00000458573|LMOD2;INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2;INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000292372|Q9NQA3|WASH6P;ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;ENST00000360982.2_1_2:183902874-183903513:-|nuORF;REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;ENSG00000151612|ENST00000508784|ZNF827;REV__ENSG00000100312|ENST00000216139|ACR;REV__RBM33|p.T776Qfs*17|1|0.24|ENSG00000184863|chr7:155742091-155742091|A/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6|MYO16;nc|ENSG00000103067|Q9H6T0|ESRP2;NYAP1|p.R745Gfs*10|1|0.38|ENSG00000166924|chr7:100491057-100491057|C/-|frameshift_variant;ENSG00000170807|ENST00000458573|LMOD2;INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant;REV__RAPH1|p.K1026Qfs*47|1|0.27|ENSG00000173166|chr2:203440114-203440115|-/G|frameshift_variant;REV__ENSG00000186648|ENST00000342740|CARMIL3;REV__nc|ENSG00000133816|O94851|MICAL2;REV__ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.2376708984375 2 448.747453 895.480354 -0.19023 -8.5365E-05 0.16344 7.3343E-05 -0.026789 -1.2021E-05 448.7475046792521 48.057 2.6947 45.188 44.116 46.81 -2.869 104 76 2 0 0 0 0.13407 1 8971 8971 4.7159 0 1 1704400 46626 13202;1815;1196;3681;9017;25562;4876;14689;24044;6097;7535;18332;6722;18918;2163;5765;19045 31025 31045 45877 45877 0.028433013570861476 TPPPPQLET 9 Unmodified _TPPPPQLET_ 0 0 0 ENST00000476372.1_1_11:291984-293434:+|nuORF;ENST00000474221.5_1_11:291984-293434:+|nuORF ENST00000476372.1_1_11:291984-293434:+|nuORF ENST00000476372.1_1_11:291984-293434:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2680358886719 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 86.902 1 83.175 82.675 83.675 -3.727 0 0 0 0.19711 1 16991 16991 1.2148 0.588 1 46627 10254 31026 31046 45878 45878 0.012100613150096251 TPPSHTTFPPP 11 Unmodified _TPPSHTTFPPP_ 0 0 0 REV__MUC6|p.N1717Tfs*10|1|0.03|ENSG00000184956|chr11:1017653-1017653|G/-|frameshift_variant REV__MUC6|p.N1717Tfs*10|1|0.03|ENSG00000184956|chr11:1017653-1017653|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2515869140625 2 589.795663 1177.57677 0.57719 0.00034042 -0.67363 -0.0003973 -0.096438 -5.6879E-05 589.7954928258204 104.39 0.2768 100.05 99.903 100.18 -4.346 11 7 2 0 0 0 0.6353 1 20006 20006 16.149 1.3108 1 934020 + 46628 18924 31027 31047 45879 45879 -0.004911758736170668 TPPTPPGHT 9 Unmodified _TPPTPPGHT_ 0 0 0 REV__ENST00000566034.1_1_16:1033566-1035383:+|nuORF REV__ENST00000566034.1_1_16:1033566-1035383:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7537536621094 2 452.729792 903.445031 -0.51946 -0.00023517 0.64461 0.00029183 0.12515 5.6659E-05 452.72999253154006 36.119 0.81275 33.725 33.276 34.089 -2.3938 71 22 5 0 0 0 0.39168 1 6594 6594 0.87518 0 1 19225000 + 46629 13861 31028 31048 45880 45880 -0.010553611707109667 TPPVPYRPG 9 Unmodified _TPPVPYRPG_ 0 0 0 REV__ENST00000571541.5_1_17:7297219-7297795:-|nuORF REV__ENST00000571541.5_1_17:7297219-7297795:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 328.0257568359375 3 328.515148 982.523616 -0.20597 -6.7666E-05 0.015449 5.0753E-06 -0.19053 -6.259E-05 328.5151905750301 49.445 0.77008 49.445 49.055 49.825 0 44 21 3 0 0 0 0.884 1 9298 9298 1.1933 0 1 1282500 + 46630 23166 31029 31049 45881 45881 0.03165491134382137 TPPVPYRPG 9 Unmodified _TPPVPYRPG_ 0 0 0 REV__ENST00000571541.5_1_17:7297219-7297795:-|nuORF REV__ENST00000571541.5_1_17:7297219-7297795:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 328.515148 982.523616 -0.45819 -0.00015052 0.5009 0.00016455 0.042716 1.4033E-05 328.5153185740579 52.011 0.72644 49.129 48.831 49.558 -2.8824 -0.082042 0.00016224 NaN 1.1933 38 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2320500 + 46631 23166 31029 31049 0.03165491134382137 TPPVPYRPG 9 Unmodified _TPPVPYRPG_ 0 0 0 REV__ENST00000571541.5_1_17:7297219-7297795:-|nuORF REV__ENST00000571541.5_1_17:7297219-7297795:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 328.515148 982.523616 0.050058 1.6445E-05 0.35418 0.00011635 0.40424 0.0001328 328.5151285626593 52.255 0.70243 49.168 48.811 49.514 -3.0876 -0.043123 1.7636E-05 NaN 1.1933 28 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1639100 + 46632 23166 31029 31049 0.03165491134382137 TPPVPYRPG 9 Unmodified _TPPVPYRPG_ 0 0 0 REV__ENST00000571541.5_1_17:7297219-7297795:-|nuORF REV__ENST00000571541.5_1_17:7297219-7297795:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 328.515148 982.523616 -0.74111 -0.00024347 0.5498 0.00018062 -0.19131 -6.2847E-05 328.5153563039832 52.154 0.80205 49.102 48.76 49.562 -3.0517 -0.10864 0.00021043 NaN 1.1933 37 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1241600 + 46633 23166 31029 31049 0.03165491134382137 TPQDTLSVP 9 Unmodified _TPQDTLSVP_ 0 0 0 ENST00000568229.5_1_15:74212299-74212341:-|nuORF ENST00000568229.5_1_15:74212299-74212341:-|nuORF ENST00000568229.5_1_15:74212299-74212341:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7381591796875 2 479.248015 956.481476 0.13029 6.2442E-05 -1.0691 -0.00051237 -0.93881 -0.00044992 479.247479669996 76.615 1.2624 72.981 72.646 73.909 -3.6337 60 35 3 0 0 0 0.32263 1 14548 14548 37.974 8.8924 1 7339400 46634 11395 31030 31050 45882 45882 0.001494709353437429 TPQIDGLSV 9 Unmodified _TPQIDGLSV_ 0 0 0 CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant;nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5;CNTNAP5|p.M432Nfs*7|1|0.35|ENSG00000155052|chr2:124504522-124504523|-/A|frameshift_variant CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2492370605469 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 57.439 1 57.439 56.939 57.939 0 0 0 0 0.23508 1 10981 10981 11.64 0.81637 1 46635 604 31031 31051 45883 45883 0.019457747979686246 TPQMPPPPP 9 Unmodified _TPQMPPPPP_ 0 0 0 REV__ENSG00000108091|ENST00000263102|CCDC6 REV__ENSG00000108091|ENST00000263102|CCDC6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7731018066406 2 481.244221 960.473888 0.039348 1.8936E-05 3.106 0.0014947 3.1453 0.0015137 481.24498764373243 24.797 0.50201 24.797 24.511 25.013 0 17 14 2 0 0 0 0.70873 1 4304 4304 12.532 0 1 635920 + 46636 15109 31032 31052 45884 45884 -0.007929598659416115 TPQNAIFF 8 Unmodified _TPQNAIFF_ 0 0 0 ENSG00000156076|ENST00000286574|WIF1 ENSG00000156076|ENST00000286574|WIF1 ENSG00000156076|ENST00000286574|WIF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1756591796875 3 313.164116 936.470518 NaN NaN NaN NaN NaN NaN NaN 84.545 1 80.834 80.334 81.334 -3.7117 0 0 0 0.21486 1 16150 16150 3.9444 0 1 46637 5076 31033 31053 45885 45885 -0.0002588664827953835 TPQYKGDISS 10 Unmodified _TPQYKGDISS_ 0 0 0 nc|ENSG00000068745|Q9UHH9-6|IP6K2 nc|ENSG00000068745|Q9UHH9-6|IP6K2 nc|ENSG00000068745|Q9UHH9-6|IP6K2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7865600585938 2 548.269478 1094.5244 -0.032171 -1.7638E-05 -3.8981 -0.0021372 -3.9302 -0.0021548 548.2674776243916 45.46 0.35149 42.593 42.291 42.643 -2.8665 13 9 2 0 0 0 0.90598 1 8225 8225 2.9952 0 1 431800 46638 12233 31034 31054 45886 45886 -0.019077590072356543 TPREGRLL 8 Unmodified _TPREGRLL_ 0 0 0 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2 REV__nc|ENSG00000149930|Q9UL54-3|TAOK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 471.27960205078125 2 471.279983 940.545414 NaN NaN NaN NaN NaN NaN NaN 159.56 1 154.77 154.27 155.27 -4.7952 0 0 0 0.21181 1 31724 31724 15.768 0 1 + 46639 17021 31035 31055 45887 45887 0.0727629588294576 TPRPEGLHY 9 Unmodified _TPRPEGLHY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0726013183594 3 357.185691 1068.53524 -0.1776 -6.3436E-05 0.12743 4.5517E-05 -0.050165 -1.7918E-05 357.1856970351672 37.744 1.6438 37.744 36.887 38.531 0 115 46 3 0 0 0 0.87918 1 6840 6840 1.0715 0.10919 1 10205000 46640 3487 31036 31056 45888 45888 0.0037168815772474773 TPRWPRERRRR 11 Unmodified _TPRWPRERRRR_ 0 0 0 REV__ENST00000278823.6_1_11:62366051-62368981:-|nuORF REV__ENST00000278823.6_1_11:62366051-62368981:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2761840820312 3 522.638057 1564.89234 0.29948 0.00015652 -3.9715 -0.0020757 -3.6721 -0.0019192 522.6364121560466 138.64 0.5321 133.79 133.5 134.04 -4.8492 17 14 2 0 0 0 0.89122 1 26700 26700 0.50596 0.33396 1 1588600 + 46641 20298 31037 31057 45889 45889 0.13249260488169057 TPSCSADDYAD 11 Unmodified _TPSCSADDYAD_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11 ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 382.56427001953125 3 382.141488 1143.40263 0.14742 5.6334E-05 -1.1587 -0.0004428 -1.0113 -0.00038647 382.14272349983554 44.107 0.54062 44.107 43.883 44.424 0 65 15 6 0 0 0 0.88824 1 8225 8225 0.094841 0 1 7724000 46642 5813 31038 31058 45890 45890 -0.16333169151926086 TPSCSADDYAD 11 Unmodified _TPSCSADDYAD_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11 ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 382.141488 1143.40263 -0.27328 -0.00010443 1.3285 0.00050768 1.0552 0.00040325 382.142985443907 47.135 0.65576 44.294 43.972 44.628 -2.8409 0.076814 0.00031216 NaN 0.094841 56 17 4 NaN NaN NaN NaN 0 NaN NaN 0 4114300 46643 5813 31038 31058 -0.16333169151926086 TPSCSADDYAD 11 Unmodified _TPSCSADDYAD_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11 ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 382.141488 1143.40263 -0.0014403 -5.504E-07 1.2177 0.00046532 1.2162 0.00046477 382.14301109643213 47.204 0.71816 44.262 43.968 44.686 -2.9421 0.045072 0.00018508 NaN 0.094841 62 20 4 NaN NaN NaN NaN 0 NaN NaN 0 6106600 46644 5813 31038 31058 -0.16333169151926086 TPSCSADDYAD 11 Unmodified _TPSCSADDYAD_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11 ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 382.141488 1143.40263 -0.76278 -0.00029149 1.7347 0.00066292 0.97196 0.00037142 382.1431005819843 47.155 0.65432 44.205 43.948 44.603 -2.9499 -0.011617 0.00077787 NaN 0.094841 54 18 4 NaN NaN NaN NaN 0 NaN NaN 0 5683900 46645 5813 31038 31058 -0.16333169151926086 TPSGVIKSPG 10 Unmodified _TPSGVIKSPG_ 0 0 0 nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1;ENSG00000099250|ENST00000374867|NRP1 nc|ENSG00000099250|O14786-3|NRP1 nc|ENSG00000099250|O14786-3|NRP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 471.7648010253906 2 471.766374 941.518196 NaN NaN NaN NaN NaN NaN NaN 141.39 1 136.74 136.24 137.24 -4.6493 0 0 0 2.8426 1 27929 27929 0.51642 0 1 46646 1883 31039 31059 45891 45891 0.04509767551905952 TPSQKEPTSL 10 Unmodified _TPSQKEPTSL_ 0 0 0 nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1;SIMC1|p.L204Cfs*39|1|0.28|ENSG00000170085|chr5:176290187-176290187|C/-|frameshift_variant nc|ENSG00000170085|Q8NDZ2|SIMC1 nc|ENSG00000170085|Q8NDZ2|SIMC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7852172851562 2 544.285128 1086.5557 0.5184 0.00028216 1.5436 0.00084014 2.062 0.0011223 544.2856737761684 159.11 0.39568 153.84 153.73 154.13 -5.2712 14 10 2 0 0 0 0.75233 1 30908 30908 22.736 5.6234 1 793040 46647 6037 31040 31060 45892 45892 0.015888140268771167 TPSSPNPFDEL 11 Unmodified _TPSSPNPFDEL_ 0 0 0 REV__ENST00000474359.6_1_12:58016417-58018310:+|nuORF REV__ENST00000474359.6_1_12:58016417-58018310:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.280517578125 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 42.134 1 42.134 41.634 42.634 0 0 0 0 0.22632 1 7875 7875 0.0059557 0 1 + 46648 22081 31041 31061 45893 45893 -0.047637936983846885 TPSTPRPHVS 10 Unmodified _TPSTPRPHVS_ 0 0 0 ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A ENSG00000141837|ENST00000360228|CACNA1A ENSG00000141837|ENST00000360228|CACNA1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2057189941406 3 360.192845 1077.55671 NaN NaN NaN NaN NaN NaN NaN 82.084 1 78.21 77.71 78.71 -3.8736 0 0 0 0.22588 1 15590 15590 12.873 4.7171 1 46649 4396 31042 31062 45894 45894 0.02103073186435722 TPTMGDEDS 9 Unmodified _TPTMGDEDS_ 0 0 0 REV__ENSG00000175311|ENST00000311620|ANKS4B REV__ENSG00000175311|ENST00000311620|ANKS4B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.12384033203125 3 318.123657 951.349141 NaN NaN NaN NaN NaN NaN NaN 60.952 1 57.582 57.082 58.082 -3.3694 0 0 0 0.23508 1 11357 11357 2.4985 0.84587 1 + 46650 18471 31043 31063 45895 45895 -0.12847921863772171 TPTMPAAALG 10 Unmodified _TPTMPAAALG_ 0 0 0 REV__CELF4|p.P346Hfs*54|2|0.22|ENSG00000101489|chr18:37270830-37270830|G/-|frameshift_variant REV__CELF4|p.P346Hfs*54|2|0.22|ENSG00000101489|chr18:37270830-37270830|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25347900390625 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 69.933 1 66.353 65.853 66.853 -3.5798 0 0 0 2.8426 1 13173 13173 8.7518 2.5599 1 + 46651 13362 31044 31064 45896 45896 0.0017073627144554848 TPTPATNPAS 10 Unmodified _TPTPATNPAS_ 0 0 0 REV__PHLDA1|p.C171Vfs*246|1|0.2|ENSG00000139289|chr12:76031232-76031233|-/T|frameshift_variant REV__PHLDA1|p.C171Vfs*246|1|0.2|ENSG00000139289|chr12:76031232-76031233|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73773193359375 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 32.523 1 30.375 29.875 30.875 -2.1483 0 0 0 2.8426 1 5638 5638 0.51642 0 1 + 46652 24463 31045 31065 45897 45897 -0.018436997244748454 TPVQREDIE 9 Unmodified _TPVQREDIE_ 0 0 0 REV__nc|ENSG00000197562|Q96S21-2|RAB40C REV__nc|ENSG00000197562|Q96S21-2|RAB40C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77099609375 2 543.774928 1085.5353 NaN NaN NaN NaN NaN NaN NaN 159.77 1 154.54 154.04 155.04 -5.2299 0 0 0 0.22621 1 31013 31013 15.847 1.9411 1 + 46653 24230 31046 31066 45898 45898 -0.004043566329528403 TPVRLELQ 8 Unmodified _TPVRLELQ_ 0 0 0 ISM2|p.L105V|1|0.21|ENSG00000100593|chr14:77484748-77484748|A/C|missense_variant ISM2|p.L105V|1|0.21|ENSG00000100593|chr14:77484748-77484748|A/C|missense_variant ISM2|p.L105V|1|0.21|ENSG00000100593|chr14:77484748-77484748|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7262268066406 2 478.282192 954.549831 NaN NaN NaN NaN NaN NaN NaN 150.78 1 146.04 145.54 146.54 -4.7323 0 0 0 0.21019 1 29949 29949 15.847 0 1 46654 11958 31047 31067 45899 45899 0.07073760305831911 TPVVQGQMNI 10 Unmodified _TPVVQGQMNI_ 0 0 0 REV__ENSG00000134852|ENST00000513440|CLOCK REV__ENSG00000134852|ENST00000513440|CLOCK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7850952148438 2 543.784241 1085.55393 0.38857 0.0002113 0.12755 6.9359E-05 0.51612 0.00028066 543.7844624628818 158.88 0.46585 154.08 153.69 154.15 -4.7952 18 12 2 0 0 0 0.34654 2 31569 31569;31599 34.402 6.7729 1 1411100 + 46655 16233 31048 31068 45900;45901 45900 0.014574817372704274 TPVVQGQMNI 10 Unmodified _TPVVQGQMNI_ 0 0 0 REV__ENSG00000134852|ENST00000513440|CLOCK REV__ENSG00000134852|ENST00000513440|CLOCK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7838745117188 2 543.784241 1085.55393 0.38857 0.0002113 0.12755 6.9359E-05 0.51612 0.00028066 543.7844624628818 158.88 0.46585 154.08 153.69 154.15 -4.7952 18 12 2 0 0 0 0.54036 1 31521 31521 37.974 3.5723 1 1411100 + 46656 16233 31048 31068 45902 45902 0.014574817372704274 TPVVQGQMNI 10 Unmodified _TPVVQGQMNI_ 0 0 0 REV__ENSG00000134852|ENST00000513440|CLOCK REV__ENSG00000134852|ENST00000513440|CLOCK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7852172851562 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 159.29 1 154.02 153.52 154.52 -5.2712 0 0 0 0.11575 1 30908 30908 41.84 7.4379 1 + 46657 16233 31048 31068 45903 45903 0.014574817372704274 TPVVQGQMNI 10 Unmodified _TPVVQGQMNI_ 0 0 0 REV__ENSG00000134852|ENST00000513440|CLOCK REV__ENSG00000134852|ENST00000513440|CLOCK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7837524414062 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 159.51 1 154.24 153.74 154.74 -5.2712 0 0 0 2.8426 1 30949 30949 0.51642 0.21782 1 + 46658 16233 31048 31068 45904 45904 0.014574817372704274 TPVVWLVTL 9 Unmodified _TPVVWLVTL_ 0 0 0 REV__ENST00000462857.5_1_6:30656440-30657876:-|nuORF REV__ENST00000462857.5_1_6:30656440-30657876:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.2113342285156 3 343.211066 1026.61137 NaN NaN NaN NaN NaN NaN NaN 144.15 1 144.15 143.65 144.65 0 0 0 0 0.23508 1 28792 28792 1.0715 0 1 + 46659 16388 31049 31069 45905 45905 0.0991269200512761 TPWGDDLMP 9 Unmodified _TPWGDDLMP_ 0 0 0 REV__ENSG00000137809|ENST00000315757|ITGA11 REV__ENSG00000137809|ENST00000315757|ITGA11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 344.5011291503906 3 344.488271 1030.44298 NaN NaN NaN NaN NaN NaN NaN 30.692 1 28.575 28.075 29.075 -2.1167 0 0 0 0.19657 1 5553 5553 4.897 1.6157 1 + 46660 16411 31050 31070 45906 45906 -0.07102157970848566 TPWRPGRPD 9 Unmodified _TPWRPGRPD_ 0 0 0 MMP15|p.R322W|1|0.62|ENSG00000102996|chr16:58041670-58041670|C/T|missense_variant MMP15|p.R322W|1|0.62|ENSG00000102996|chr16:58041670-58041670|C/T|missense_variant MMP15|p.R322W|1|0.62|ENSG00000102996|chr16:58041670-58041670|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.278076171875 2 541.280515 1080.54648 NaN NaN NaN NaN NaN NaN NaN 64.553 1 61.556 61.056 62.056 -2.9975 0 0 0 0.19665 1 12487 12487 0.40827 0 1 46661 12149 31051 31071 45907 45907 0.009425102518662243 TPWSRKSHP 9 Unmodified _TPWSRKSHP_ 0 0 0 NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant;nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;ENSG00000188158|ENST00000676302|NHS NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7909545898438 2 548.28834 1094.56213 0.60192 0.00033002 -0.97276 -0.00053335 -0.37084 -0.00020333 548.2875661073281 30.726 0.45603 28.652 28.394 28.85 -2.0743 21 12 3 0 0 0 0.80521 1 5292 5292 15.847 12.251 1 1026700 46662 7154 31052 31072 45908 45908 0.018627967689099023 TPYDTGLY 8 Unmodified _TPYDTGLY_ 0 0 0 REV__nc|ENSG00000132535|P78352-3|DLG4 REV__nc|ENSG00000132535|P78352-3|DLG4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2491455078125 2 465.216183 928.417813 NaN NaN NaN NaN NaN NaN NaN 102.02 1 97.702 97.202 98.202 -4.3208 0 0 0 0.19492 1 19531 19531 26.341 0 1 + 46663 16122 31053 31073 45909 45909 -0.04925889501760139 TPYLSEETTY 10 Unmodified _TPYLSEETTY_ 0 0 0 nc|ENSG00000103995|O94986-3|CEP152;CEP152|p.L1674Tfs*23|1|0.09|ENSG00000103995|chr15:48738362-48738363|-/T|frameshift_variant;ENSG00000103995|ENST00000380950|CEP152 nc|ENSG00000103995|O94986-3|CEP152 nc|ENSG00000103995|O94986-3|CEP152 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2728881835938 2 602.274426 1202.5343 NaN NaN NaN NaN NaN NaN NaN 63.038 1 59.622 59.122 60.122 -3.4158 0 0 0 0.20769 1 11774 11774 26.884 0.61551 1 46664 487 31054 31074 45910 45910 -0.058866157925194784 TPYRWYRY 8 Unmodified _TPYRWYRY_ 0 0 0 ENST00000395514.5_1_14:55309440-55309725:-|nuORF ENST00000395514.5_1_14:55309440-55309725:-|nuORF ENST00000395514.5_1_14:55309440-55309725:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2763671875 2 602.79854 1203.58253 0.30066 0.00018124 1.6093 0.00097009 1.91 0.0011513 603.3001141928645 135.18 0.21146 130.35 130.17 130.38 -4.8307 6 5 2 0 0 0 1.0249 1 26006 26006 0.69038 0 1 2738800 46665 9431 31055 31075 45911 45911 -0.011120325712909107 TQARSCWSCY 10 Unmodified _TQARSCWSCY_ 0 0 0 REV__ENST00000295066.3_1_2:32264543-32264697:-|nuORF REV__ENST00000295066.3_1_2:32264543-32264697:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2739868164062 2 602.747333 1203.48011 0.56953 0.00034328 -1.7548 -0.0010577 -1.1853 -0.00071445 602.7464733243123 115.41 0.10076 110.86 110.8 110.9 -4.555 4 2 2 0 0 0 0.84281 1 22154 22154 5.7319 1.5423 1 764680 + 46666 20367 31056 31076 45912 45912 -0.11348809696710305 TQDHYILST 9 Unmodified _TQDHYILST_ 0 0 0 REV__ZNF607|p.R581Q|1|0.23|ENSG00000198182|chr19:37698389-37698389|C/T|missense_variant REV__ZNF607|p.R581Q|1|0.23|ENSG00000198182|chr19:37698389-37698389|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20904541015625 3 359.845223 1076.51384 -0.22435 -8.0732E-05 0.48453 0.00017436 0.26018 9.3624E-05 359.84534065755184 23.102 0.44532 23.102 22.892 23.338 0 22 12 2 0 0 0 0.78323 1 3936 3936 2.4985 0 1 2151400 + 46667 25585 31057 31077 45913 45913 -0.021357416616638147 TQDLPKVL 8 Unmodified _TQDLPKVL_ 0 0 0 TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2392272949219 2 457.271293 912.528032 0.326 0.00014907 0.014836 6.7841E-06 0.34084 0.00015586 457.271216653942 110.19 0.62199 110.19 109.88 110.51 0 25 17 2 0 0 0 0.31517 1 21708 21708 36.044 9.7029 1 1570700 46668 1519 31058 31078 45914 45914 0.06826955557301062 TQDNNIVNY 9 Unmodified _TQDNNIVNY_ 0 0 0 nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2796630859375 2 540.751453 1079.48835 0.31205 0.00016874 0.012916 6.9844E-06 0.32497 0.00017573 540.7514158275188 23.075 0.44532 23.075 22.892 23.338 0 34 12 3 0 0 0 0.14967 1 3920 3920 58.679 8.7458 1 4529800 46669 5873 31059 31079 45915 45915 -0.04821216184086552 TQDNNIVNY 9 Unmodified _TQDNNIVNY_ 0 0 0 nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2802124023438 2 540.751453 1079.48835 1.2397 0.00067037 -1.0029 -0.0005423 0.23683 0.00012807 540.7508697922677 24.765 0.5482 23.116 22.789 23.337 -1.6482 37 15 3 0 0 0 0.11171 1 4349 4349 58.679 10.93 1 4228200 46670 5873 31059 31079 45916 45916 -0.04821216184086552 TQDPFPGP 8 Unmodified _TQDPFPGP_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF;ENST00000468157.5_1_6:33255793-33256956:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 430.0873718261719 2 429.703243 857.391933 0.12523 5.3811E-05 -0.52167 -0.00022416 -0.39644 -0.00017035 429.7031481052398 136.6 0.31583 136.6 136.48 136.8 0 11 8 2 0 0 0 0.73426 1 27063 27063 9.3474 9.3474 1 1657500 46671 7795 31060 31080 45917 45917 -0.04246738953372642 TQEGKAGSPVL 11 Unmodified _TQEGKAGSPVL_ 0 0 0 ENST00000243077.7_1_12:57606805-57607051:+|nuORF ENST00000243077.7_1_12:57606805-57607051:+|nuORF ENST00000243077.7_1_12:57606805-57607051:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7914428710938 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 168.82 1 163.89 163.39 164.39 -4.9295 0 0 0 0.21513 1 33298 33298 15.248 1.6336 1 46672 8193 31061 31081 45918 45918 0.032325202637593975 TQELAFATHQD 11 Unmodified _TQELAFATHQD_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7786865234375 2 630.796392 1259.57823 NaN NaN NaN NaN NaN NaN NaN 42.736 1 42.736 42.236 43.236 0 0 0 0 0.22209 1 7998 7998 13.615 0.5724 1 46673 2937 31062 31082 45919 45919 -0.04117586575534915 TQELAFATHQD 11 Unmodified _TQELAFATHQD_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.761962890625 2 630.796392 1259.57823 NaN NaN NaN NaN NaN NaN NaN 42.761 1 42.761 42.261 43.261 0 0 0 0 0.22842 1 8004 8004 9.544 0.16085 1 46674 2937 31062 31082 45920 45920 -0.04117586575534915 TQEMKEMYQNA 11 Unmodified _TQEMKEMYQNA_ 0 0 0 nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1;nc|ENSG00000229089|Q5CZ79-2|ANKRD20A8P nc|ENSG00000291287|Q5SQ80|ANKRD20A2P nc|ENSG00000291287|Q5SQ80|ANKRD20A2P MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.224365234375 3 458.200572 1371.57989 0.094212 4.3168E-05 2.7359 0.0012536 2.8301 0.0012968 458.2018529465636 56.26 0.14232 56.26 56.151 56.294 0 5 3 2 0 0 0 0.78834 1 10742 10742 5.1984 0.48252 1 434920 46675 7955 31063 31083 45921 45921 -0.09104036873395671 TQEQKQLAP 9 Unmodified _TQEQKQLAP_ 0 0 0 REV__ENST00000428457.1_1_7:47317502-47317613:-|nuORF REV__ENST00000428457.1_1_7:47317502-47317613:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2816162109375 2 521.780013 1041.54547 -0.4492 -0.00023439 1.1333 0.00059134 0.6841 0.00035695 522.2820180057693 72.458 0.21365 68.831 68.696 68.91 -3.6275 7 5 2 0 0 0 0.36931 1 13691 13691 27.629 3.6082 1 697090 + 46676 21593 31064 31084 45922 45922 0.026362510922808724 TQGGAIQLANN 11 Unmodified _TQGGAIQLANN_ 0 0 0 ENSG00000118260|ENST00000353267|CREB1;nc|ENSG00000118260|P16220-1|CREB1 ENSG00000118260|ENST00000353267|CREB1 ENSG00000118260|ENST00000353267|CREB1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7822265625 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 49.378 1 46.371 45.871 46.871 -3.0068 0 0 0 0.22632 1 9060 9060 5.4027 0.5057 1 46677 3025 31065 31085 45923 45923 0.00718465461204687 TQGKVSSVPY 10 Unmodified _TQGKVSSVPY_ 0 0 0 ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000172824|Q5XG92-4|CES4A;nc|ENSG00000172824|Q5XG92-7|CES4A;ENST00000535543.5_1_16:67034893-67043042:+|nuORF;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;ENSG00000172824|ENST00000648724|CES4A ENST00000543561.1_1_16:67034544-67038818:+|nuORF ENST00000543561.1_1_16:67034544-67038818:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2844848632812 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 63.481 1 60.484 59.984 60.984 -2.9975 0 0 0 0.22588 1 12267 12267 9.3831 0.035688 1 46678 6244 31066 31086 45924 45924 0.020531352350417365 TQHALRPKLS 10 Unmodified _TQHALRPKLS_ 0 0 0 REV__ENST00000542348.5_1_12:124403402-124428035:-|nuORF REV__ENST00000542348.5_1_12:124403402-124428035:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3392944335938 2 575.838197 1149.66184 -0.3245 -0.00018686 0.36948 0.00021276 0.04498 2.5901E-05 575.8384247770543 38.699 0.52287 36.15 35.873 36.396 -2.5491 24 14 2 0 0 0 0.59928 1 7173 7173 19.257 2.3147 1 1439200 + 46679 22871 31067 31087 45925 45925 0.09299614382848631 TQHALRPKLS 10 Unmodified _TQHALRPKLS_ 0 0 0 REV__ENST00000542348.5_1_12:124403402-124428035:-|nuORF REV__ENST00000542348.5_1_12:124403402-124428035:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.33935546875 2 575.838197 1149.66184 0.14648 8.435E-05 -0.30303 -0.0001745 -0.15655 -9.0145E-05 575.8379950284001 38.555 0.66832 36.113 35.845 36.513 -2.4419 28 18 2 0 0 0 0.59928 1 6896 6896 19.257 2.3147 1 1037500 + 46680 22871 31067 31087 45926 45926 0.09299614382848631 TQHALRPKLS 10 Unmodified _TQHALRPKLS_ 0 0 0 REV__ENST00000542348.5_1_12:124403402-124428035:-|nuORF REV__ENST00000542348.5_1_12:124403402-124428035:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3375244140625 2 575.838197 1149.66184 0.14648 8.435E-05 -0.30303 -0.0001745 -0.15655 -9.0145E-05 575.8379950284001 38.555 0.66832 36.113 35.845 36.513 -2.4419 28 18 2 0 0 0 0.84281 1 6940 6940 19.257 13.051 1 1037500 + 46681 22871 31067 31087 45927 45927 0.09299614382848631 TQHALRPKLS 10 Unmodified _TQHALRPKLS_ 0 0 0 REV__ENST00000542348.5_1_12:124403402-124428035:-|nuORF REV__ENST00000542348.5_1_12:124403402-124428035:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3394165039062 2 575.838197 1149.66184 0.18992 0.00010936 0.35479 0.0002043 0.5447 0.00031366 575.8384784818994 38.465 0.45665 36.06 35.844 36.301 -2.4049 22 12 2 0 0 0 0.59928 1 6884 6884 19.257 2.3147 1 1197300 + 46682 22871 31067 31087 45928 45928 0.09299614382848631 TQHLLQSIIA 10 Unmodified _TQHLLQSIIA_ 0 0 0 REV__ENSG00000138642|ENST00000264346|HERC6 REV__ENSG00000138642|ENST00000264346|HERC6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2229309082031 3 375.220513 1122.63971 -0.45151 -0.00016941 2.3903 0.0008969 1.9388 0.00072749 375.2205158287855 58.286 0.47827 58.286 58.068 58.547 0 17 13 2 0 0 0 0.73657 1 11123 11123 7.4771 1.2713 1 1323800 + 46683 16470 31068 31088 45929 45929 0.08329389914433705 TQHNKSFSTT 10 Unmodified _TQHNKSFSTT_ 0 0 0 REV__MUC4|p.A320S|1|0.4|ENSG00000145113|chr3:195790622-195790622|C/A|missense_variant REV__MUC4|p.A320S|1|0.4|ENSG00000145113|chr3:195790622-195790622|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3177490234375 2 575.778002 1149.54145 0.28861 0.00016618 -1.0166 -0.00058532 -0.72796 -0.00041914 575.7773351427725 20.407 0.45461 19.011 18.76 19.214 -1.3966 33 12 4 0 0 0 0.90091 1 3373 3373 3.2813 0 1 6151000 + 46684 23891 31069 31089 45930 45930 -0.027338384014456096 TQHNLFAM 8 Unmodified _TQHNLFAM_ 0 0 0 EGF|p.L788Pfs*6|1|0.03|ENSG00000138798|chr4:109980965-109980966|-/C|frameshift_variant;EGF|p.L789Rfs*9|1|0.03|ENSG00000138798|chr4:109980967-109980968|-/CC|frameshift_variant;nc|ENSG00000138798|P01133-2|EGF;nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF EGF|p.L788Pfs*6|1|0.03|ENSG00000138798|chr4:109980965-109980966|-/C|frameshift_variant EGF|p.L788Pfs*6|1|0.03|ENSG00000138798|chr4:109980965-109980966|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2315673828125 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 176.3 1 171.43 170.93 171.93 -4.8739 0 0 0 0.21486 1 35069 35069 0.79363 0 1 46685 922 31070 31090 45931 45931 -0.03307014668507691 TQIDHYVGI 9 Unmodified _TQIDHYVGI_ 0 0 0 nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-4|RTN3 nc|ENSG00000133318|O95197-7|RTN3 nc|ENSG00000133318|O95197-7|RTN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6820068359375 2 523.269281 1044.52401 -0.15751 -8.2423E-05 -0.24992 -0.00013077 -0.40743 -0.0002132 523.2692345173921 99.161 0.41251 95.028 94.82 95.233 -4.1326 23 11 3 0 0 0 0.41266 1 19446 19446 24.991 5.734 1 1784100 46686 3797 31071 31091 45932 45932 0.0035286606357658457 TQIDHYVGI 9 Unmodified _TQIDHYVGI_ 0 0 0 nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-4|RTN3 nc|ENSG00000133318|O95197-7|RTN3 nc|ENSG00000133318|O95197-7|RTN3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.269281 1044.52401 0.012906 6.7534E-06 0.21087 0.00011034 0.22378 0.0001171 523.2691712999103 95.159 0.44596 95.159 94.974 95.42 0 0.055279 0.00034164 NaN 24.991 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1581600 46687 3797 31071 31091 0.0035286606357658457 TQIDHYVGI 9 Unmodified _TQIDHYVGI_ 0 0 0 nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-4|RTN3 nc|ENSG00000133318|O95197-7|RTN3 nc|ENSG00000133318|O95197-7|RTN3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.269281 1044.52401 0.23046 0.00012059 -0.24981 -0.00013072 -0.019352 -1.0126E-05 523.2689413534332 99.08 0.40642 95.124 94.899 95.305 -3.9564 0.020147 -0.00014048 NaN 24.991 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1012000 46688 3797 31071 31091 0.0035286606357658457 TQIKVESL 8 Unmodified _TQIKVESL_ 0 0 0 REV__nc|ENSG00000100503|Q8N4C6-6|NIN REV__nc|ENSG00000100503|Q8N4C6-6|NIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2442932128906 2 459.26875 916.522947 -0.058529 -2.6881E-05 0.771 0.0003541 0.71247 0.00032722 459.268859756936 79.924 1.2708 76.414 75.979 77.249 -3.5102 83 35 4 0 0 0 8448 1 15689 15689 14.838 2.5976 1 18910000 + 46689 14717 31072 31092 45933 45933 0.06134651694674176 TQILSVPKV 9 Unmodified _TQILSVPKV_ 0 0 0 nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 492.2665710449219 2 492.808042 983.601532 0.33428 0.00016474 -0.23101 -0.00011385 0.10327 5.0892E-05 492.80790194342757 120.96 0.85372 116.44 116.09 116.95 -4.5221 58 23 3 0 0 0 0.27464 1 23851 23851 51.415 39.188 1 6925100 46690 12298 31073 31093 45934 45934 0.10907503999749224 TQILSVPKV 9 Unmodified _TQILSVPKV_ 0 0 0 nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 492.808042 983.601532 0.13107 6.459E-05 0.1255 6.1845E-05 0.25656 0.00012644 492.80807684501934 121.09 0.79028 116.56 116.1 116.89 -4.5305 0.041823 0.00026233 NaN 51.415 54 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5142400 46691 12298 31073 31093 0.10907503999749224 TQIQNHFLS 9 Unmodified _TQIQNHFLS_ 0 0 0 REV__ENST00000542527.6_1_16:22092304-22092481:+|nuORF REV__ENST00000542527.6_1_16:22092304-22092481:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7881469726562 2 544.28018 1086.54581 -0.011582 -6.304E-06 -0.11355 -6.1804E-05 -0.12513 -6.8108E-05 544.2800152516068 46.873 0.72974 44.006 43.542 44.272 -2.8665 39 20 3 0 0 0 0.66788 1 8567 8567 12.241 0 1 2098100 + 46692 22874 31074 31094 45935 45935 0.005996708121301708 TQITAYMIF 9 Unmodified _TQITAYMIF_ 0 0 0 REV__TXNDC15|p.R343Q|1|0.22|ENSG00000113621|chr5:134899630-134899630|G/A|missense_variant REV__TXNDC15|p.R343Q|1|0.22|ENSG00000113621|chr5:134899630-134899630|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7695922851562 2 544.27826 1086.54197 -0.21347 -0.00011619 -0.30814 -0.00016771 -0.52161 -0.0002839 544.2780460161335 36.342 0.3893 33.948 33.803 34.192 -2.3938 16 10 2 0 0 0 0.8372 1 6738 6738 13.042 0.80181 1 624070 + 46693 25507 31075 31095 45936 45936 0.0021586499406112125 TQITAYMIF 9 Unmodified _TQITAYMIF_ 0 0 0 REV__TXNDC15|p.R343Q|1|0.22|ENSG00000113621|chr5:134899630-134899630|G/A|missense_variant REV__TXNDC15|p.R343Q|1|0.22|ENSG00000113621|chr5:134899630-134899630|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 544.27826 1086.54197 0.14644 7.9706E-05 1.464 0.00079681 1.6104 0.00087651 544.2786493512026 36.268 0.34725 33.92 33.793 34.14 -2.3479 -0.013918 0.0014085 NaN 13.042 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 767450 + 46694 25507 31075 31095 0.0021586499406112125 TQIVEEAEY 9 Unmodified _TQIVEEAEY_ 0 0 0 REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2579956054688 2 541.256037 1080.49752 0.43246 0.00023407 -0.10433 -5.647E-05 0.32813 0.0001776 541.2559487473428 69.684 0.88217 66.104 65.568 66.45 -3.5798 58 24 4 0 0 0 0.55979 1 13058 13058 15.847 1.0089 1 15625000 + 46695 19211 31076 31096 45937 45937 -0.03950867618414122 TQIYLFFY 8 Unmodified _TQIYLFFY_ 0 0 0 ENST00000359297.6_1_1:36806610-36807063:-|nuORF ENST00000359297.6_1_1:36806610-36807063:-|nuORF ENST00000359297.6_1_1:36806610-36807063:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7822875976562 2 547.781493 1093.54843 0.051569 2.8249E-05 1.7366 0.00095129 1.7882 0.00097954 547.7824283740742 49.368 0.41219 46.369 46.067 46.479 -2.999 13 11 2 0 0 0 8448 1 8986 8986 1.7423 1.6784 1 606550 46696 8998 31077 31097 45938 45938 0.005401262171062626 TQKDFAQKI 9 Unmodified _TQKDFAQKI_ 0 0 0 tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1 tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1 tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 125.54 1 125.54 125.04 126.04 0 0 0 0 0.23508 1 24760 24760 4.1895 0 1 46697 26502 31078 31098 45939 45939 0.046171279889904326 TQKEHLLKY 9 Unmodified _TQKEHLLKY_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.22076416015625 3 387.220513 1158.63971 NaN NaN NaN NaN NaN NaN NaN 73.712 1 70.348 69.848 70.848 -3.3643 0 0 0 0.23508 1 14370 14370 4.897 2.3985 1 46698 1446 31079 31099 45940 45940 0.0667338991440829 TQKSAHTR 8 Unmodified _TQKSAHTR_ 0 0 0 ENSG00000075407|ENST00000685332|ZNF37A;ZNF37A|p.G296Efs*135|1|0.11|ENSG00000075407|chr10:38118034-38118034|G/-|frameshift_variant ENSG00000075407|ENST00000685332|ZNF37A ENSG00000075407|ENST00000685332|ZNF37A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.171142578125 3 310.170152 927.488627 NaN NaN NaN NaN NaN NaN NaN 20.602 1 19.205 18.705 19.705 -1.3966 0 0 0 0.21486 1 3449 3449 6.2058 1.3088 1 46699 1516 31080 31100 45941 45941 0.021982483264196162 TQLERVRRRLR 11 Unmodified _TQLERVRRRLR_ 0 0 0 REV__nc|ENSG00000171444|P23508|MCC REV__nc|ENSG00000171444|P23508|MCC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.39453125 2 741.958032 1481.90151 NaN NaN NaN NaN NaN NaN NaN 144.74 1 139.67 139.17 140.17 -5.0671 0 0 0 0.23558 1 27936 27936 3.8763 2.683 1 + 46700 18224 31081 31101 45942 45942 0.17983609053862892 TQLHYEASVPD 11 Unmodified _TQLHYEASVPD_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2;FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant;FAT2|p.V3716Ffs*44|1|0.22|ENSG00000086570|chr5:151521447-151521447|C/-|frameshift_variant;FAT2|p.D4043Tfs*8|1|0.1|ENSG00000086570|chr5:151507544-151507544|C/-|frameshift_variant;FAT2|p.P2377Qfs*41|1|0.34|ENSG00000086570|chr5:151543997-151543997|G/-|frameshift_variant ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7608642578125 2 630.298767 1258.58298 0.66748 0.00042071 -0.41477 -0.00026143 0.25272 0.00015929 630.2985374774529 82.051 0.57684 82.051 81.75 82.327 0 39 15 3 0 0 0 0.90723 1 15928 15928 7.609 7.609 1 8233500 46701 1696 31082 31102 45943 45943 -0.03596702432787424 TQLLIVLVR 9 Unmodified _TQLLIVLVR_ 0 0 0 REV__BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant REV__BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 352.2111511230469 3 352.237615 1053.69102 NaN NaN NaN NaN NaN NaN NaN 124.09 1 119.36 118.86 119.86 -4.731 0 0 0 0.23508 1 23832 23832 0.26902 0 1 + 46702 13181 31083 31103 45944 45944 0.1663175867913651 TQLLPRSTY 9 Unmodified _TQLLPRSTY_ 0 0 0 REV__ENST00000342665.4_2_20:307553-308057:+|nuORF REV__ENST00000342665.4_2_20:307553-308057:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2020263671875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 126.64 1 122.02 121.52 122.52 -4.6172 0 0 0 0.23508 1 24969 24969 2.4985 0 1 + 46703 20724 31084 31104 45945 45945 0.0461712798901317 TQLMLLWF 8 Unmodified _TQLMLLWF_ 0 0 0 REV__ENST00000341119.9_1_7:87488049-87505510:-|nuORF REV__ENST00000341119.9_1_7:87488049-87505510:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.1908264160156 3 351.193018 1050.55722 NaN NaN NaN NaN NaN NaN NaN 98.678 1 94.545 94.045 95.045 -4.1326 0 0 0 0.23312 1 19377 19377 6.2058 6.078 1 + 46704 20710 31085 31105 45946 45946 0.03396776581917038 TQPELSYF 8 Unmodified _TQPELSYF_ 0 0 0 REV__ENSG00000141569|ENST00000269383|TRIM65 REV__ENSG00000141569|ENST00000269383|TRIM65 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 329.0215759277344 3 328.827281 983.460012 0.14039 4.6164E-05 -0.65099 -0.00021406 -0.5106 -0.0001679 328.82706876347896 36.023 0.42042 33.77 33.538 33.958 -2.2527 19 11 3 0 0 0 1.0248 1 6359 6359 1.4819 0 1 1260000 + 46705 16641 31086 31106 45947 45947 -0.03237914093381278 TQPELSYF 8 Unmodified _TQPELSYF_ 0 0 0 REV__ENSG00000141569|ENST00000269383|TRIM65 REV__ENSG00000141569|ENST00000269383|TRIM65 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 328.827281 983.460012 -0.44494 -0.00014631 -0.02458 -8.0826E-06 -0.46952 -0.00015439 328.827244146888 33.935 0.48779 33.935 33.69 34.178 0 0.14207 0.00010124 NaN 1.4819 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1077300 + 46706 16641 31086 31106 -0.03237914093381278 TQPELSYF 8 Unmodified _TQPELSYF_ 0 0 0 REV__ENSG00000141569|ENST00000269383|TRIM65 REV__ENSG00000141569|ENST00000269383|TRIM65 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 328.827281 983.460012 -0.67626 -0.00022237 0.25999 8.5492E-05 -0.41627 -0.00013688 328.82737496798774 36.069 0.28307 33.675 33.52 33.803 -2.3938 -0.11854 0.00038197 NaN 1.4819 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1110100 + 46707 16641 31086 31106 -0.03237914093381278 TQPGLVPG 8 Unmodified _TQPGLVPG_ 0 0 0 ENSG00000136535|ENST00000389554|TBR1 ENSG00000136535|ENST00000389554|TBR1 ENSG00000136535|ENST00000389554|TBR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 384.8918762207031 2 384.716153 767.417754 NaN NaN NaN NaN NaN NaN NaN 129.84 1 129.84 129.34 130.34 0 0 0 0 0.2343 1 25655 25655 1.7423 0.52744 1 46708 4018 31087 31107 45948 45948 0.024741552889167906 TQPPTEPIP 9 Unmodified _TQPPTEPIP_ 0 0 0 REV__CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant;REV__ENST00000531150.5_1_1:26508531-26510633:+|nuORF REV__CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2584533691406 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 46.574 1 43.708 43.208 44.208 -2.8666 0 0 0 0.18489 1 8480 8480 2.8827 0 1 + 46709 13457;22765 31088 31108 45949 45949 0.012100613149868877 TQPVLRLA 8 Unmodified _TQPVLRLA_ 0 0 0 nc|ENSG00000104660|O95214-2|LEPROTL1 nc|ENSG00000104660|O95214-2|LEPROTL1 nc|ENSG00000104660|O95214-2|LEPROTL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.27825927734375 2 449.279452 896.544351 NaN NaN NaN NaN NaN NaN NaN 55.164 1 52.027 51.527 52.527 -3.1377 0 0 0 0.21486 1 10234 10234 6.7232 1.4925 1 46710 12267 31089 31109 45950 45950 0.09194081514033314 TQQLRCPLK 9 Unmodified _TQQLRCPLK_ 0 0 0 REV__nc|ENSG00000151835|Q9NZJ4-2|SACS REV__nc|ENSG00000151835|Q9NZJ4-2|SACS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.785400390625 2 543.808051 1085.60155 0.33749 0.00018353 -3.286 -0.001787 -2.9485 -0.0016034 543.8059183272659 151.36 0.42015 146.61 146.36 146.78 -4.7523 17 11 2 0 0 0 0.17664 2 30068 30037;30068 12.517 0.99017 1 1562800 + 46711 17086 31090 31110 45951;45952 45952 0.06217180728094718 TQQLRCPLK 9 Unmodified _TQQLRCPLK_ 0 0 0 REV__nc|ENSG00000151835|Q9NZJ4-2|SACS REV__nc|ENSG00000151835|Q9NZJ4-2|SACS MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.780029296875 2 543.808051 1085.60155 NaN NaN NaN NaN NaN NaN NaN 152.17 1 146.93 146.43 147.43 -5.2365 0 0 0 0.18525 1 29500 29500 2.6312 0 1 + 46712 17086 31090 31110 45953 45953 0.06217180728094718 TQRGKGEYDV 10 Unmodified _TQRGKGEYDV_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1;REV__LRP1|p.D1283Ifs*50|1|0.09|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant REV__ENSG00000123384|ENST00000243077|LRP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.314453125 2 576.785827 1151.5571 0.45483 0.00026234 -0.19081 -0.00011005 0.26402 0.00015228 576.786538788092 71.308 0.73685 67.728 67.122 67.858 -3.5798 25 20 2 0 0 0 0.82238 1 13335 13335 17.113 0 1 2035400 + 46713 15726;23808 31091 31111 45954 45954 -0.012615518844086182 TQRIRKKRELR 11 Unmodified _TQRIRKKRELR_ 0 0 0 ENST00000324871.11_1_12:58164900-58164960:-|nuORF ENST00000324871.11_1_12:58164900-58164960:-|nuORF ENST00000324871.11_1_12:58164900-58164960:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.37158203125 2 742.468232 1482.92191 NaN NaN NaN NaN NaN NaN NaN 163.82 1 159.03 158.53 159.53 -4.7898 0 0 0 0.23698 1 32683 32683 1.9064 0.71303 1 46714 8734 31092 31112 45955 45955 0.1997677971369285 TQRLLLPEL 9 Unmodified _TQRLLLPEL_ 0 0 0 REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant REV__DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2777099609375 2 541.832049 1081.64954 0.31744 0.000172 0.018995 1.0292E-05 0.33643 0.00018229 542.3335549219529 121.63 1.0195 121.63 121.18 122.2 0 40 28 2 0 0 0 0.51337 1 23971 23971 0.12781 0 1 2623600 + 46715 13708 31093 31113 45956 45956 0.1119857791979939 TQRRLMNF 8 Unmodified _TQRRLMNF_ 0 0 0 ENST00000524494.1_1_1:77763548-77806259:+|nuORF;ENST00000465146.5_1_1:77806124-77883412:+|nuORF;AK5|p.K399Nfs*26|1|0.15|ENSG00000154027|chr1:77518609-77518609|A/-|frameshift_variant;nc|ENSG00000154027|Q9Y6K8-3|AK5;ENSG00000154027|ENST00000354567|AK5 ENST00000524494.1_1_1:77763548-77806259:+|nuORF ENST00000524494.1_1_1:77763548-77806259:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2817993164062 2 533.284743 1064.55493 NaN NaN NaN NaN NaN NaN NaN 122.56 1 118.02 117.52 118.52 -4.5476 0 0 0 0.23107 1 24161 24161 0.063987 0 1 46716 108 31094 31114 45957 45957 0.02523740896799609 TQSEKQFVV 9 Unmodified _TQSEKQFVV_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2702026367188 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 63.722 1 60.725 60.225 61.225 -2.9975 0 0 0 0.16777 1 12318 12318 22.736 21.861 1 46717 5479 31095 31115 45958 45958 0.020531352350417365 TQSEKQFVV 9 Unmodified _TQSEKQFVV_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.280029296875 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 63.964 1 60.966 60.466 61.466 -2.9975 0 0 0 0.19687 1 12365 12365 8.1555 3.2585 1 46718 5479 31095 31115 45959 45959 0.020531352350417365 TQSEKQFVV 9 Unmodified _TQSEKQFVV_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2706909179688 2 533.282389 1064.55022 0.56807 0.00030294 -0.81118 -0.00043259 -0.24311 -0.00012965 533.2819118816406 64.161 0.45761 60.746 60.494 60.952 -3.4158 17 12 2 0 0 0 0.15889 2 11999 11999;12010 22.736 21.774 1 739170 46719 5479 31095 31115 45960;45961 45960 0.020531352350417365 TQSEKQFVV 9 Unmodified _TQSEKQFVV_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2687377929688 2 533.282389 1064.55022 0.32522 0.00017344 -1.2794 -0.00068231 -0.95422 -0.00050887 533.2817450740397 64.077 0.41419 60.821 60.468 60.882 -3.2567 15 11 2 0 0 0 0.35556 2 11969 11969;11981 12.241 11.026 1 1053200 46720 5479 31095 31115 45962;45963 45962 0.020531352350417365 TQSSGYSSNY 10 Unmodified _TQSSGYSSNY_ 0 0 0 YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant;YTHDF2|p.F459Sfs*15|1|0.27|ENSG00000198492|chr1:28743643-28743643|T/-|frameshift_variant;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2 YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7896118164062 2 547.225268 1092.43598 0.17508 9.5811E-05 0.029158 1.5956E-05 0.20424 0.00011177 547.2253494096461 45.936 0.76041 43.095 42.69 43.45 -2.8409 40 21 3 0 0 0 0.78938 1 8627 8627 16.149 0 1 3153400 46721 7456 31096 31116 45964 45964 -0.10653799317697121 TQSSGYSSNY 10 Unmodified _TQSSGYSSNY_ 0 0 0 YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant;YTHDF2|p.F459Sfs*15|1|0.27|ENSG00000198492|chr1:28743643-28743643|T/-|frameshift_variant;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2 YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7902221679688 2 547.225268 1092.43598 -0.025072 -1.372E-05 0.69395 0.00037975 0.66888 0.00036603 547.225655260649 45.98 1.0035 43.114 42.643 43.646 -2.8666 36 28 2 0 0 0 0.81109 1 8333 8333 13.042 0 1 2417000 46722 7456 31096 31116 45965 45965 -0.10653799317697121 TQSVSTLFRL 10 Unmodified _TQSVSTLFRL_ 0 0 0 REV__ENST00000479016.2_1_12:56619445-56620048:+|nuORF REV__ENST00000479016.2_1_12:56619445-56620048:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.326904296875 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 171.13 1 166.26 165.76 166.76 -4.873 0 0 0 2.8426 1 33903 33903 0.84494 0.43668 1 + 46723 22149 31097 31117 45966 45966 0.06533086051808823 TQTKLQLP 8 Unmodified _TQTKLQLP_ 0 0 0 REV__ENST00000464213.1_1_7:80300351-80300459:+|nuORF REV__ENST00000464213.1_1_7:80300351-80300459:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647644042969 3 310.18692 927.538931 NaN NaN NaN NaN NaN NaN NaN 18.798 1 17.163 16.663 17.663 -1.6351 0 0 0 0.2396 1 2803 2803 0.12286 0 1 + 46724 21933 31098 31118 45967 45967 0.07226357931563143 TQTLFRPG 8 Unmodified _TQTLFRPG_ 0 0 0 REV__ENST00000374202.6_1_X:70331291-70331453:-|nuORF REV__ENST00000374202.6_1_X:70331291-70331453:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2355041503906 2 460.253434 918.492316 NaN NaN NaN NaN NaN NaN NaN 48.636 1 45.767 45.267 46.267 -2.869 0 0 0 0.21039 1 9201 9201 16.942 1.0951 1 + 46725 21052 31099 31119 45968 45968 0.029809181002860896 TQTLPALSLPY 11 Unmodified _TQTLPALSLPY_ 0 0 0 ENST00000486172.1_1_3:62385083-62388968:-|nuORF ENST00000486172.1_1_3:62385083-62388968:-|nuORF ENST00000486172.1_1_3:62385083-62388968:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2782592773438 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 89.135 1 85.343 84.843 85.843 -3.7926 0 0 0 0.23324 1 17439 17439 5.7319 0 1 46726 10451 31100 31120 45969 45969 0.06146836991774762 TQVGTSKTV 9 Unmodified _TQVGTSKTV_ 0 0 0 REV__nc|ENSG00000188916|Q6ZSG2-2|INSYN2A REV__nc|ENSG00000188916|Q6ZSG2-2|INSYN2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2401428222656 2 460.756007 919.497461 0.40612 0.00018712 -0.88145 -0.00040613 -0.47533 -0.00021901 460.75542256118206 75.794 1.0978 75.794 75.103 76.201 0 59 31 3 0 0 0 0.11808 1 14743 14743 0.87518 0.35876 1 6449000 + 46727 19180 31101 31121 45970 45970 0.03449177172228701 TQVGTSKTV 9 Unmodified _TQVGTSKTV_ 0 0 0 REV__nc|ENSG00000188916|Q6ZSG2-2|INSYN2A REV__nc|ENSG00000188916|Q6ZSG2-2|INSYN2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2384033203125 2 460.756007 919.497461 -0.11016 -5.0755E-05 -0.43287 -0.00019945 -0.54303 -0.0002502 460.7557461704644 79.551 0.84635 75.746 75.475 76.321 -3.8048 42 23 2 0 0 0 0.11808 1 15098 15098 0.87518 0.19379 1 4273900 + 46728 19180 31101 31121 45971 45971 0.03449177172228701 TQVGTSKTV 9 Unmodified _TQVGTSKTV_ 0 0 0 REV__nc|ENSG00000188916|Q6ZSG2-2|INSYN2A REV__nc|ENSG00000188916|Q6ZSG2-2|INSYN2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2311706542969 2 460.756007 919.497461 -0.10048 -4.6295E-05 -0.55754 -0.00025689 -0.65801 -0.00030318 460.7556935112907 79.461 0.84 75.785 75.512 76.352 -3.676 56 23 3 0 0 0 0.11808 1 15175 15175 0.87518 0.19379 1 6051700 + 46729 19180 31101 31121 45972 45972 0.03449177172228701 TQVHCKGT 8 Unmodified _TQVHCKGT_ 0 0 0 REV__nc|ENSG00000100029|O00541-2|PES1 REV__nc|ENSG00000100029|O00541-2|PES1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2164001464844 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 73.474 1 69.88 69.38 70.38 -3.594 0 0 0 0.20896 1 13947 13947 18.135 0 1 + 46730 14656 31102 31122 45973 45973 -0.023875877025943737 TQVKLLKLVY 10 Unmodified _TQVKLLKLVY_ 0 0 0 REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2920532226562 2 602.886824 1203.7591 0.39158 0.00023608 -0.14628 -8.8188E-05 0.2453 0.00014789 603.388022869611 137.88 0.17398 137.88 137.83 138.01 0 6 4 2 0 0 0 1.133 1 27357 27357 0.043787 0 1 2751000 + 46731 16699 31103 31123 45974 45974 0.1653658353911851 TQVKLLKLVY 10 Unmodified _TQVKLLKLVY_ 0 0 0 REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2901611328125 2 602.886824 1203.7591 0.090355 5.4474E-05 0.57448 0.00034635 0.66484 0.00040082 602.8871359326699 78.361 0.49482 74.702 74.446 74.941 -3.6588 25 13 2 0 0 0 0.871 1 14893 14893 6.2058 2.2614 1 3327300 + 46732 16699 31103 31123 45975 45975 0.1653658353911851 TQVKLLKLVY 10 Unmodified _TQVKLLKLVY_ 0 0 0 REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 602.886824 1203.7591 1.0092 0.00060846 -0.51172 -0.00030851 0.49753 0.00029995 602.8864019361746 78.05 0.57106 74.587 74.323 74.894 -3.4633 -0.061551 -0.00071242 NaN 6.2058 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 5726200 + 46733 16699 31103 31123 0.1653658353911851 TQVKQQTE 8 Unmodified _TQVKQQTE_ 0 0 0 REV__nc|ENSG00000051128|Q9NSC5-2|HOMER3 REV__nc|ENSG00000051128|Q9NSC5-2|HOMER3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.16436767578125 3 321.169818 960.487624 NaN NaN NaN NaN NaN NaN NaN 75.778 1 72.144 71.644 72.644 -3.6337 0 0 0 0.21486 1 14410 14410 0.45834 0 1 + 46734 23939 31104 31124 45976 45976 0.005799891668630153 TQVKTEFLVS 10 Unmodified _TQVKTEFLVS_ 0 0 0 REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3251953125 2 576.318971 1150.62339 -0.082816 -4.7728E-05 0.23109 0.00013318 0.14827 8.5453E-05 576.3190559253896 47.337 0.62125 44.387 44.087 44.708 -2.9499 56 17 4 0 0 0 0.67319 1 8576 8576 13.906 0 1 16653000 + 46735 15690 31105 31125 45977 45977 0.05410263957674033 TQVMAPLPET 10 Unmodified _TQVMAPLPET_ 0 0 0 REV__ENSG00000188786|ENST00000373036|MTF1 REV__ENSG00000188786|ENST00000373036|MTF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7764282226562 2 543.778625 1085.5427 NaN NaN NaN NaN NaN NaN NaN 23.467 1 22.013 21.513 22.513 -1.4535 0 0 0 0.12865 1 3787 3787 39.95 7.6442 1 + 46736 19171 31106 31126 45978 45978 0.003346596431129001 TQVWRLYDWFR 11 Unmodified _TQVWRLYDWFR_ 0 0 0 REV__CON__Q03247 REV__CON__Q03247 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6896362304688 3 523.936887 1568.78883 -0.60502 -0.00031699 1.5391 0.00080642 0.93412 0.00048942 524.2718964115348 22.859 0.49473 21.405 21.083 21.578 -1.4535 24 13 3 0 0 0 0.96211 1 3597 3597 1.9275 0.59786 1 1199000 + + 46737 13529 31107 31127 45979 45979 0.02718915537138855 TQYWAGWY 8 Unmodified _TQYWAGWY_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 359.21746826171875 3 358.827504 1073.46068 -0.83837 -0.00030083 1.2248 0.0004395 0.38647 0.00013868 358.8278963558687 81.992 0.97692 78.304 77.831 78.808 -3.6879 84 27 5 0 0 0 8448 1 15612 15612 4.2837 4.2837 1 20059000 46738 2938 31108 31128 45980 45980 -0.07311074653671312 TRACSNYAR 9 Unmodified _TRACSNYAR_ 0 0 0 REV__RERE|p.G1140A|1|0.5|ENSG00000142599|chr1:8359963-8359963|C/G|missense_variant REV__RERE|p.G1140A|1|0.5|ENSG00000142599|chr1:8359963-8359963|C/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2686767578125 2 521.248357 1040.48216 0.2899 0.00015111 -0.59051 -0.0003078 -0.30061 -0.00015669 521.2479611711893 137.81 0.95905 132.97 132.52 133.48 -4.84 69 26 4 0 0 0 0.5059 2 26550 26550;26600 19.257 1.122 1 11398000 + 46739 24559 31109 31129 45981;45982 45981 -0.036460128966155025 TRAHIQLI 8 Unmodified _TRAHIQLI_ 0 0 0 REV__ZNF700|p.S687P|1|0.41|ENSG00000196757|chr19:11950083-11950083|T/C|missense_variant REV__ZNF700|p.S687P|1|0.41|ENSG00000196757|chr19:11950083-11950083|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.83447265625 3 317.86266 950.566149 -0.51454 -0.00016355 0.52712 0.00016755 0.012576 3.9975E-06 317.86274586417994 19.742 0.33804 19.742 19.52 19.859 0 14 9 2 0 0 0 0.86478 1 3237 3237 1.4819 0 1 1011700 + 46740 19278 31110 31130 45983 45983 0.08888886262627693 TRAHIQLI 8 Unmodified _TRAHIQLI_ 0 0 0 REV__ZNF700|p.S687P|1|0.41|ENSG00000196757|chr19:11950083-11950083|T/C|missense_variant REV__ZNF700|p.S687P|1|0.41|ENSG00000196757|chr19:11950083-11950083|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.17626953125 3 317.86266 950.566149 -1.3947 -0.00044333 1.1899 0.00037822 -0.20486 -6.5117E-05 317.8630368755698 21.519 0.32044 19.798 19.598 19.919 -1.7211 13 8 2 0 0 0 0.86478 1 3352 3352 1.4819 0 1 638900 + 46741 19278 31110 31130 45984 45984 0.08888886262627693 TRAHIQLI 8 Unmodified _TRAHIQLI_ 0 0 0 REV__ZNF700|p.S687P|1|0.41|ENSG00000196757|chr19:11950083-11950083|T/C|missense_variant REV__ZNF700|p.S687P|1|0.41|ENSG00000196757|chr19:11950083-11950083|T/C|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 317.86266 950.566149 -0.51454 -0.00016355 0.52712 0.00016755 0.012576 3.9975E-06 317.86274586417994 19.742 0.33804 19.742 19.52 19.859 0 -0.04241 1.446E-05 NaN 1.4819 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1011700 + 46742 19278 31110 31130 0.08888886262627693 TRAHIQLI 8 Unmodified _TRAHIQLI_ 0 0 0 REV__ZNF700|p.S687P|1|0.41|ENSG00000196757|chr19:11950083-11950083|T/C|missense_variant REV__ZNF700|p.S687P|1|0.41|ENSG00000196757|chr19:11950083-11950083|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 317.86266 950.566149 0.16739 5.3206E-05 -0.44575 -0.00014169 -0.27837 -8.8483E-05 317.8625814689942 21.298 0.35046 19.823 19.665 20.016 -1.4742 0.03906 -0.00091326 NaN 1.4819 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 679980 + 46743 19278 31110 31130 0.08888886262627693 TRAHIQLI 8 Unmodified _TRAHIQLI_ 0 0 0 REV__ZNF700|p.S687P|1|0.41|ENSG00000196757|chr19:11950083-11950083|T/C|missense_variant REV__ZNF700|p.S687P|1|0.41|ENSG00000196757|chr19:11950083-11950083|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 317.86266 950.566149 -0.19588 -6.2264E-05 -0.14974 -4.7598E-05 -0.34563 -0.00010986 317.86264730123537 21.159 0.28821 19.775 19.614 19.902 -1.3847 -0.0098564 -0.00063099 NaN 1.4819 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 486100 + 46744 19278 31110 31130 0.08888886262627693 TRAHIQLI 8 Unmodified _TRAHIQLI_ 0 0 0 REV__ZNF700|p.S687P|1|0.41|ENSG00000196757|chr19:11950083-11950083|T/C|missense_variant REV__ZNF700|p.S687P|1|0.41|ENSG00000196757|chr19:11950083-11950083|T/C|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 317.86266 950.566149 -1.3947 -0.00044333 1.1899 0.00037822 -0.20486 -6.5117E-05 317.8630368755698 21.519 0.32044 19.798 19.598 19.919 -1.7211 0.013206 0.00064646 NaN 1.4819 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 638900 + 46745 19278 31110 31130 0.08888886262627693 TRALFDKDL 9 Unmodified _TRALFDKDL_ 0 0 0 REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|30|2|sense REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|30|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201171875 3 360.201229 1077.58186 -0.025728 -9.2673E-06 0.13109 4.7218E-05 0.10536 3.795E-05 360.2012206955988 40.893 0.3463 38.354 38.208 38.554 -2.5398 12 9 2 0 0 0 0.74567 1 7352 7352 4.1895 0.60244 1 826160 + 46746 23752 31111 31131 45985 45985 0.046171279889904326 TRALFDKDL 9 Unmodified _TRALFDKDL_ 0 0 0 REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|30|2|sense REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|30|2|sense MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 360.201229 1077.58186 -0.13833 -4.9828E-05 0.42083 0.00015158 0.2825 0.00010176 360.20130367950105 38.397 0.31847 38.397 38.284 38.603 0 0.021808 0.00014975 NaN 4.1895 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 470600 + 46747 23752 31111 31131 0.046171279889904326 TRALFDKDL 9 Unmodified _TRALFDKDL_ 0 0 0 REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|30|2|sense REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|30|2|sense MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 360.201229 1077.58186 -0.025728 -9.2673E-06 0.13109 4.7218E-05 0.10536 3.795E-05 360.2012206955988 40.893 0.3463 38.354 38.208 38.554 -2.5398 -0.021808 -0.00016335 NaN 4.1895 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 826160 + 46748 23752 31111 31131 0.046171279889904326 TRAPAAAQG 9 Unmodified _TRAPAAAQG_ 0 0 0 REV__ENST00000379409.6_2_1:906220-907525:+|nuORF REV__ENST00000379409.6_2_1:906220-907525:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.726318359375 2 421.727584 841.440614 NaN NaN NaN NaN NaN NaN NaN 54.213 1 51.076 50.576 51.576 -3.1377 0 0 0 0.19674 1 10027 10027 1.2148 0.80657 1 + 46749 21137 31112 31132 45986 45986 0.013551744063761362 TRCGDGGK 8 Unmodified _TRCGDGGK_ 0 0 0 ENSG00000149256|ENST00000278550|TENM4;TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant;TENM4|p.E1344D|1|0.38|ENSG00000149256|chr11:78712504-78712504|T/A|missense_variant ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 397.148681640625 2 397.184694 792.354836 NaN NaN NaN NaN NaN NaN NaN 63.26 1 60.262 59.762 60.762 -2.9975 0 0 0 0.23782 1 12220 12220 0.0082765 0 1 46750 4777 31113 31133 45987 45987 -0.04964733770782459 TRCVGRSYLW 10 Unmodified _TRCVGRSYLW_ 0 0 0 REV__ENSG00000006116|ENST00000005284|CACNG3 REV__ENSG00000006116|ENST00000005284|CACNG3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 414.26873779296875 3 414.213364 1239.61826 NaN NaN NaN NaN NaN NaN NaN 128.98 1 124.23 123.73 124.73 -4.7408 0 0 0 0.22588 1 24818 24818 3.0723 0.81953 1 + 46751 13869 31114 31134 45988 45988 0.008036816140474912 TRDKKFQR 8 Unmodified _TRDKKFQR_ 0 0 0 ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4;ENTPD4|p.V203Cfs*14|1|0.3|ENSG00000197217|chr8:23443911-23443911|G/-|frameshift_variant;ENTPD4|p.N300Kfs*5|1|0.29|ENSG00000197217|chr8:23439898-23439899|-/T|frameshift_variant ENST00000523958.5_1_8:23291828-23307413:-|nuORF ENST00000523958.5_1_8:23291828-23307413:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2086486816406 3 360.208718 1077.60433 -0.2175 -7.8347E-05 -0.1836 -6.6133E-05 -0.4011 -0.00014448 360.2086474133823 32.018 0.44938 29.87 29.688 30.137 -2.1483 18 12 2 0 0 0 0.73402 1 5576 5576 9.3831 0 1 585360 46752 7342 31115 31135 45989 45989 0.0686277217728275 TRDLWMPRCC 10 Unmodified _TRDLWMPRCC_ 0 0 0 ENST00000264990.10_1_3:132378600-132378657:-|nuORF ENST00000264990.10_1_3:132378600-132378657:-|nuORF ENST00000264990.10_1_3:132378600-132378657:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 427.14178466796875 3 427.528077 1279.5624 NaN NaN NaN NaN NaN NaN NaN 53.96 1 53.96 53.46 54.46 0 0 0 0 0.22588 1 10285 10285 5.4027 0.35519 1 46753 8345 31116 31136 45990 45990 -0.06619610889401883 TREHRHRRRYY 11 Unmodified _TREHRHRRRYY_ 0 0 0 REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7940673828125 3 543.957567 1628.85087 0.32543 0.00017702 -0.55573 -0.00030229 -0.2303 -0.00012527 543.9576835633903 117.93 0.17998 117.93 117.86 118.04 0 6 4 2 0 0 0 0.96225 1 23250 23250 0.45452 0.45452 1 1063300 + 46754 18164 31117 31137 45991 45991 0.061600797288747344 TREHRHRRRYY 11 Unmodified _TREHRHRRRYY_ 0 0 0 REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3648071289062 2 815.432713 1628.85087 NaN NaN NaN NaN NaN NaN NaN 20.701 1 19.316 18.816 19.816 -1.3847 0 0 0 0.23698 1 3221 3221 0.35063 0 1 + 46755 18164 31117 31137 45992 45992 0.061600797288747344 TREPLNSY 8 Unmodified _TREPLNSY_ 0 0 0 REV__ENST00000238497.9_1_18:61067292-61067792:-|nuORF REV__ENST00000238497.9_1_18:61067292-61067792:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2577819824219 2 490.245806 978.47706 -0.33931 -0.00016635 0.97571 0.00047834 0.6364 0.00031199 490.24631159155433 44.784 0.77171 42.037 41.674 42.446 -2.7475 56 21 3 0 0 0 8448 1 8122 8122 6.1918 1.4759 1 8111600 + 46756 20084 31118 31138 45993 45993 -0.013039934875791914 TRFDLAKV 8 Unmodified _TRFDLAKV_ 0 0 0 REV__nc|ENSG00000082556|P41145-2|OPRK1 REV__nc|ENSG00000082556|P41145-2|OPRK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1937255859375 3 317.187032 948.539266 NaN NaN NaN NaN NaN NaN NaN 87.201 1 83.474 82.974 83.974 -3.727 0 0 0 0.21486 1 17048 17048 1.6526 0 1 + 46757 14441 31119 31139 45994 45994 0.06293777651410437 TRFTDYQL 8 Unmodified _TRFTDYQL_ 0 0 0 ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;ZFHX4|p.R2647Gfs*44|1|0.25|ENSG00000091656|chr8:76854854-76854854|A/-|frameshift_variant;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.D2246*|1|0.34|ENSG00000091656|chr8:76853650-76853651|-/T|frameshift_variant;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant;ZFHX3|p.H3611Tfs*83|1|0.4|ENSG00000140836|chr16:72787445-72787445|G/-|frameshift_variant;ZFHX3|p.T3266Rfs*18|1|0.31|ENSG00000140836|chr16:72788481-72788481|G/-|frameshift_variant;nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.P2490Sfs*44|1|0.33|ENSG00000140836|chr16:72795215-72795216|-/G|frameshift_variant;ENSG00000140836|ENST00000268489|ZFHX3 ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26220703125 2 522.261456 1042.50836 -0.024637 -1.2867E-05 -0.20761 -0.00010843 -0.23225 -0.00012129 522.2613034434548 93.037 0.275 93.037 92.851 93.126 0 17 7 3 0 0 0 0.69887 1 18187 18187 14.582 0.96682 1 6431800 46758 1815 31120 31140 45995 45995 -0.011194204534831442 TRFTDYQL 8 Unmodified _TRFTDYQL_ 0 0 0 ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;ZFHX4|p.R2647Gfs*44|1|0.25|ENSG00000091656|chr8:76854854-76854854|A/-|frameshift_variant;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.D2246*|1|0.34|ENSG00000091656|chr8:76853650-76853651|-/T|frameshift_variant;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant;ZFHX3|p.H3611Tfs*83|1|0.4|ENSG00000140836|chr16:72787445-72787445|G/-|frameshift_variant;ZFHX3|p.T3266Rfs*18|1|0.31|ENSG00000140836|chr16:72788481-72788481|G/-|frameshift_variant;nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.P2490Sfs*44|1|0.33|ENSG00000140836|chr16:72795215-72795216|-/G|frameshift_variant;ENSG00000140836|ENST00000268489|ZFHX3 ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26123046875 2 522.261456 1042.50836 -0.53716 -0.00028054 0.20404 0.00010656 -0.33312 -0.00017397 522.2617470525577 97.479 0.40904 93.244 92.949 93.358 -4.2348 34 11 4 0 0 0 0.69887 1 18635 18635 14.582 2.0501 1 3320100 46759 1815 31120 31140 45996 45996 -0.011194204534831442 TRFTDYQL 8 Unmodified _TRFTDYQL_ 0 0 0 ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;ZFHX4|p.R2647Gfs*44|1|0.25|ENSG00000091656|chr8:76854854-76854854|A/-|frameshift_variant;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.D2246*|1|0.34|ENSG00000091656|chr8:76853650-76853651|-/T|frameshift_variant;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant;ZFHX3|p.H3611Tfs*83|1|0.4|ENSG00000140836|chr16:72787445-72787445|G/-|frameshift_variant;ZFHX3|p.T3266Rfs*18|1|0.31|ENSG00000140836|chr16:72788481-72788481|G/-|frameshift_variant;nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.P2490Sfs*44|1|0.33|ENSG00000140836|chr16:72795215-72795216|-/G|frameshift_variant;ENSG00000140836|ENST00000268489|ZFHX3 ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2733154296875 2 522.261456 1042.50836 0.029713 1.5518E-05 0.11659 6.0888E-05 0.1463 7.6406E-05 522.2613958787681 97.094 0.44071 93.175 92.887 93.328 -3.9194 28 12 3 0 0 0 0.69887 2 18650 18650;18655 14.582 2.0501 1 3100700 46760 1815 31120 31140 45997;45998 45997 -0.011194204534831442 TRGFLLCP 8 Unmodified _TRGFLLCP_ 0 0 0 ENST00000605201.1_1_14:35591893-35592281:+|nuORF ENST00000605201.1_1_14:35591893-35592281:+|nuORF ENST00000605201.1_1_14:35591893-35592281:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7605895996094 2 453.746931 905.479308 NaN NaN NaN NaN NaN NaN NaN 79.912 1 76.402 75.902 76.902 -3.5102 0 0 0 0.23182 1 15606 15606 0.25148 0 1 46761 11732 31121 31141 45999 45999 0.022787637165492924 TRGSGUCSQDD 11 Unmodified _TRGSGUCSQDD_ 0 0 0 REV__nc|ENSG00000162430|Q9NZV5-2|SELENON REV__nc|ENSG00000162430|Q9NZV5-2|SELENON MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 589.1463623046875 2 588.678088 1175.34162 NaN NaN NaN NaN NaN NaN NaN 173.57 1 168.69 168.19 169.19 -4.881 0 0 0 0.23698 1 34512 34512 0 0 0 + 46762 17498 31122 31142 46000 46000 -0.2390350496643805 TRIKLLVRKF 10 Unmodified _TRIKLLVRKF_ 0 0 0 ENSG00000181523|ENST00000326317|SGSH;ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF ENSG00000181523|ENST00000326317|SGSH;ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF ENST00000570923.1_1_17:78185753-78194107:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.23699951171875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 100.79 1 100.79 100.29 101.29 0 0 0 0 0.22588 1 19775 19775 0.62683 0 1 46763 11418;6726;11453 31123 31143 46001 46001 0.21390489652821998 TRIKLLVRKF 10 Unmodified _TRIKLLVRKF_ 0 0 0 ENSG00000181523|ENST00000326317|SGSH;ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF ENSG00000181523|ENST00000326317|SGSH;ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF ENST00000570923.1_1_17:78185753-78194107:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.24774169921875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 106.05 1 106.05 105.55 106.55 0 0 0 0 2.8426 1 20844 20844 0.13989 0 1 46764 11418;6726;11453 31123 31143 46002 46002 0.21390489652821998 TRIKLLVRKF 10 Unmodified _TRIKLLVRKF_ 0 0 0 ENSG00000181523|ENST00000326317|SGSH;ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF ENSG00000181523|ENST00000326317|SGSH;ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF ENST00000570923.1_1_17:78185753-78194107:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25115966796875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 119.55 1 115.03 114.53 115.53 -4.5221 0 0 0 0.22588 1 23575 23575 1.4551 0 1 46765 11418;6726;11453 31123 31143 46003 46003 0.21390489652821998 TRIKLLVRKF 10 Unmodified _TRIKLLVRKF_ 0 0 0 ENSG00000181523|ENST00000326317|SGSH;ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF ENSG00000181523|ENST00000326317|SGSH;ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF ENST00000570923.1_1_17:78185753-78194107:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2535705566406 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 147.05 1 141.94 141.44 142.44 -5.1108 0 0 0 0.22588 1 28449 28449 0.69767 0 1 46766 11418;6726;11453 31123 31143 46004 46004 0.21390489652821998 TRKAKKKKRRR 11 Unmodified _TRKAKKKKRRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 485.997802734375 3 485.998815 1454.97462 NaN NaN NaN NaN NaN NaN NaN 8.1031 1 8.1031 7.6031 8.6031 0 0 0 0 0.22632 1 811 811 0 0 1 + 46767 22757 31124 31144 46005 46005 0.26532782567119284 TRKHKHFYWKH 11 Unmodified _TRKHKHFYWKH_ 0 0 0 SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6942138671875 3 523.284621 1566.83203 NaN NaN NaN NaN NaN NaN NaN 58.302 1 55.392 54.892 55.892 -2.9105 0 0 0 0.22632 1 11196 11196 0.00056442 0.00056442 1 46768 25801 31125 31145 46006 46006 0.07129150105106419 TRKIIRRYV 9 Unmodified _TRKIIRRYV_ 0 0 0 ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-7|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 603.0023803710938 2 602.885481 1203.75641 NaN NaN NaN NaN NaN NaN NaN 170.86 1 166.07 165.57 166.57 -4.7898 0 0 0 0.23508 1 34704 34704 3.9444 0.66309 1 46769 4604 31126 31146 46007 46007 0.1626817292483338 TRKKKAPS 8 Unmodified _TRKKKAPS_ 0 0 0 REV__ENSG00000183878|ENST00000545955|UTY REV__ENSG00000183878|ENST00000545955|UTY MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23828125 2 458.290351 914.566149 NaN NaN NaN NaN NaN NaN NaN 107.96 1 103.55 103.05 104.05 -4.4121 0 0 0 0.21171 1 20712 20712 15.847 0 1 + 46770 18874 31127 31147 46008 46008 0.10544886262607633 TRKKKKKKRRL 11 Unmodified _TRKKKKKKRRL_ 0 0 0 REV__ENST00000341049.6_1_7:116199659-116199932:+|nuORF REV__ENST00000341049.6_1_7:116199659-116199932:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 735.4609375 2 735.514986 1469.01542 NaN NaN NaN NaN NaN NaN NaN 173.48 1 168.69 168.19 169.19 -4.7898 0 0 0 0.23698 1 35392 35392 0 0 1 + 46771 20708 31128 31148 46009 46009 0.2996712388676315 TRKKKKLKKK 10 Unmodified _TRKKKKLKKK_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|194|3|sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|194|3|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 429.3092346191406 3 429.309996 1284.90816 NaN NaN NaN NaN NaN NaN NaN 65.921 1 62.463 61.963 62.963 -3.4581 0 0 0 0.22588 1 12346 12346 0 0 1 + 46772 23620 31129 31149 46010 46010 0.27710153952511973 TRKQPRLRYIQ 11 Unmodified _TRKQPRLRYIQ_ 0 0 0 REV__ENST00000430420.5_1_X:54948679-54949098:+|nuORF REV__ENST00000430420.5_1_X:54948679-54949098:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 729.8294677734375 2 729.936234 1457.85791 NaN NaN NaN NaN NaN NaN NaN 166.97 1 166.97 166.47 167.47 0 0 0 0 0.23476 1 34082 34082 4.5289 0 1 + 46773 21609 31130 31150 46011 46011 0.14729999556743678 TRKRRRKRKKR 11 Unmodified _TRKRRRKRKKR_ 0 0 0 ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6898803710938 3 523.688864 1568.04476 NaN NaN NaN NaN NaN NaN NaN 106.53 1 106.53 106.03 107.03 0 0 0 0 0.22632 1 20943 20943 0 0 1 46774 8627 31131 31151 46012 46012 0.2834608095558906 TRKRRRKRKKR 11 Unmodified _TRKRRRKRKKR_ 0 0 0 ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6884765625 3 523.688864 1568.04476 NaN NaN NaN NaN NaN NaN NaN 118.07 1 118.07 117.57 118.57 0 0 0 0 0.22632 1 23257 23257 0.00056442 0.00056442 1 46775 8627 31131 31151 46013 46013 0.2834608095558906 TRKRRRKRKKR 11 Unmodified _TRKRRRKRKKR_ 0 0 0 ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3757934570312 2 785.029657 1568.04476 NaN NaN NaN NaN NaN NaN NaN 139.81 1 135.16 134.66 135.66 -4.6439 0 0 0 0.23698 1 27601 27601 0 0 1 46776 8627 31131 31151 46014 46014 0.2834608095558906 TRKRRRKRKKR 11 Unmodified _TRKRRRKRKKR_ 0 0 0 ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.690673828125 3 523.688864 1568.04476 NaN NaN NaN NaN NaN NaN NaN 166.86 1 162.07 161.57 162.57 -4.7898 0 0 0 0.22632 1 33575 33575 0 0 1 46777 8627 31131 31151 46015 46015 0.2834608095558906 TRKRRRKRKKR 11 Unmodified _TRKRRRKRKKR_ 0 0 0 ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.692138671875 3 523.688864 1568.04476 NaN NaN NaN NaN NaN NaN NaN 78.708 1 74.903 74.403 75.403 -3.8048 0 0 0 0.22632 1 14929 14929 0 0 1 46778 8627 31131 31151 46016 46016 0.2834608095558906 TRKRRRKRKKR 11 Unmodified _TRKRRRKRKKR_ 0 0 0 ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6868896484375 3 523.688864 1568.04476 NaN NaN NaN NaN NaN NaN NaN 135.73 1 130.9 130.4 131.4 -4.8307 0 0 0 0.22632 1 26135 26135 0 0 1 46779 8627 31131 31151 46017 46017 0.2834608095558906 TRKRRRKRKKR 11 Unmodified _TRKRRRKRKKR_ 0 0 0 ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.68701171875 3 523.688864 1568.04476 NaN NaN NaN NaN NaN NaN NaN 167.41 1 162.52 162.02 163.02 -4.8916 0 0 0 0.22632 1 32921 32921 0 0 1 46780 8627 31131 31151 46018 46018 0.2834608095558906 TRKRRRWRYSL 11 Unmodified _TRKRRRWRYSL_ 0 0 0 ENST00000433071.2_1_21:32931573-32932426:+|nuORF ENST00000433071.2_1_21:32931573-32932426:+|nuORF ENST00000433071.2_1_21:32931573-32932426:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 789.8436889648438 2 789.466024 1576.9175 NaN NaN NaN NaN NaN NaN NaN 166.87 1 166.87 166.37 167.37 0 0 0 0 0.22632 1 34046 34046 0.00056442 0 1 46781 9805 31132 31152 46019 46019 0.15211315290775929 TRLDGDLGQI 10 Unmodified _TRLDGDLGQI_ 0 0 0 ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7963256835938 2 544.290745 1086.56694 0.037913 2.0636E-05 -3.0721 -0.0016721 -3.0342 -0.0016515 544.7922502695169 51.942 0.13397 49.06 48.969 49.103 -2.8824 5 3 2 0 0 0 0.88798 1 9877 9877 13.615 6.3256 1 371440 46782 5856 31133 31153 46020 46020 0.027116361209891693 TRLFNKFRHHI 11 Unmodified _TRLFNKFRHHI_ 0 0 0 REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2648010253906 3 490.280988 1467.82114 NaN NaN NaN NaN NaN NaN NaN 142.16 1 137.13 136.63 137.63 -5.0261 0 0 0 0.22632 1 27392 27392 1.4551 1.4551 1 + 46783 14298 31134 31154 46021 46021 0.10593747730831637 TRLLETVK 8 Unmodified _TRLLETVK_ 0 0 0 REV__nc|ENSG00000076944|Q15833-2|STXBP2 REV__nc|ENSG00000076944|Q15833-2|STXBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 480.27923583984375 2 480.297842 958.581131 NaN NaN NaN NaN NaN NaN NaN 136.14 1 131.31 130.81 131.81 -4.8307 0 0 0 0.22847 1 26214 26214 10.074 0 1 + 46784 14354 31135 31155 46022 46022 0.1001833333994 TRLLLPQQ 8 Unmodified _TRLLLPQQ_ 0 0 0 ENST00000269967.3_1_19:41829758-41829848:+|nuORF ENST00000269967.3_1_19:41829758-41829848:+|nuORF ENST00000269967.3_1_19:41829758-41829848:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 484.7956848144531 2 484.798009 967.581465 NaN NaN NaN NaN NaN NaN NaN 135.25 1 135.25 134.75 135.75 0 0 0 0 0.23107 1 26789 26789 0.063987 0 1 46785 8398 31136 31156 46023 46023 0.09637753059803345 TRLREEFQ 8 Unmodified _TRLREEFQ_ 0 0 0 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018737792969 3 360.192845 1077.55671 -0.43209 -0.00015564 0.77942 0.00028074 0.34733 0.00012511 360.19311426754683 27.948 1.3624 25.951 25.538 26.9 -1.9962 110 38 4 0 0 0 1.0256 1 4810 4810 2.9952 0 1 45432000 + 46786 18006 31137 31157 46024 46024 0.02103073186435722 TRLSLDTMK 9 Unmodified _TRLSLDTMK_ 0 0 0 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;DNAH8|p.V3263Sfs*23|1|0.16|ENSG00000124721|chr6:38918047-38918048|-/A|frameshift_variant;DNAH8|p.V3263Sfs*28|1|0.47|ENSG00000124721|chr6:38918048-38918048|A/-|frameshift_variant;DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant;DNAH8|p.L1333Ffs*8|1|0.2|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant;DNAH8|p.N1473Kfs*8|1|0.3|ENSG00000124721|chr6:38848663-38848664|-/A|frameshift_variant;DNAH8|p.S1932Lfs*8|1|0.39|ENSG00000124721|chr6:38864002-38864002|T/-|frameshift_variant;DNAH8|p.S2184Lfs*8|1|0.39|ENSG00000124721|chr6:38872741-38872741|T/-|frameshift_variant;DNAH8|p.F2607Lfs*22|2|0.32|ENSG00000124721|chr6:38886999-38886999|T/-|frameshift_variant;DNAH8|p.F2835Lfs*10|1|0.14|ENSG00000124721|chr6:38899865-38899865|T/-|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27099609375 2 532.792066 1063.56958 0.056146 2.9914E-05 -3.187 -0.001698 -3.1308 -0.0016681 532.7902765175718 83.106 0.56382 79.498 79.127 79.691 -3.6079 19 15 2 0 0 0 0.4376 1 16246 16246 0.12781 0 1 1117200 46787 867 31138 31158 46025 46025 0.040337682542940456 TRLSLDTMK 9 Unmodified _TRLSLDTMK_ 0 0 0 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;DNAH8|p.V3263Sfs*23|1|0.16|ENSG00000124721|chr6:38918047-38918048|-/A|frameshift_variant;DNAH8|p.V3263Sfs*28|1|0.47|ENSG00000124721|chr6:38918048-38918048|A/-|frameshift_variant;DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant;DNAH8|p.L1333Ffs*8|1|0.2|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant;DNAH8|p.N1473Kfs*8|1|0.3|ENSG00000124721|chr6:38848663-38848664|-/A|frameshift_variant;DNAH8|p.S1932Lfs*8|1|0.39|ENSG00000124721|chr6:38864002-38864002|T/-|frameshift_variant;DNAH8|p.S2184Lfs*8|1|0.39|ENSG00000124721|chr6:38872741-38872741|T/-|frameshift_variant;DNAH8|p.F2607Lfs*22|2|0.32|ENSG00000124721|chr6:38886999-38886999|T/-|frameshift_variant;DNAH8|p.F2835Lfs*10|1|0.14|ENSG00000124721|chr6:38899865-38899865|T/-|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 532.792066 1063.56958 -0.036891 -1.9655E-05 -2.6738 -0.0014246 -2.7106 -0.0014442 532.7903239190891 83.12 0.47937 79.421 79.246 79.726 -3.6985 -0.066179 0.00024113 NaN 0.12781 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1072200 46788 867 31138 31158 0.040337682542940456 TRMMHVYLD 9 Unmodified _TRMMHVYLD_ 0 0 0 REV__INTS8|p.T216M|1|0.13|ENSG00000164941|chr8:94832068-94832068|C/T|missense_variant REV__INTS8|p.T216M|1|0.13|ENSG00000164941|chr8:94832068-94832068|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 389.3449401855469 3 389.187938 1164.54198 -0.43195 -0.00016811 -2.0683 -0.00080495 -2.5002 -0.00097306 389.1870815871049 40.672 0.39007 38.037 37.866 38.257 -2.6348 14 10 2 0 0 0 0.74567 1 7618 7618 4.1895 0 1 678690 + 46789 23667 31139 31159 46026 46026 -0.03370458277572652 TRMRHVISY 9 Unmodified _TRMRHVISY_ 0 0 0 ENST00000498309.1_1_5:132202377-132202798:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ ENST00000498309.1_1_5:132202377-132202798:+|nuORF ENST00000498309.1_1_5:132202377-132202798:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.71234130859375 3 388.209842 1161.6077 -0.080333 -3.1186E-05 -0.41177 -0.00015985 -0.4921 -0.00019104 388.2097730719167 32.207 1.3882 32.207 31.566 32.954 0 113 39 6 0 0 0 0.6297 1 5830 5830 28.234 17.434 1 77996000 46790 5544 31140 31160 46027 46027 0.033356989596313724 TRMRHVISY 9 Unmodified _TRMRHVISY_ 0 0 0 ENST00000498309.1_1_5:132202377-132202798:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ ENST00000498309.1_1_5:132202377-132202798:+|nuORF ENST00000498309.1_1_5:132202377-132202798:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71234130859375 3 388.209842 1161.6077 -0.40832 -0.00015851 0.024399 9.472E-06 -0.38392 -0.00014904 388.2099391882181 34.718 1.0135 32.401 32.049 33.063 -2.3175 92 28 5 0 0 0 0.29034 1 6367 6367 53.317 32.736 1 56426000 46791 5544 31140 31160 46028 46028 0.033356989596313724 TRMRHVISY 9 Unmodified _TRMRHVISY_ 0 0 0 ENST00000498309.1_1_5:132202377-132202798:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ ENST00000498309.1_1_5:132202377-132202798:+|nuORF ENST00000498309.1_1_5:132202377-132202798:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.71173095703125 3 388.209842 1161.6077 -0.28048 -0.00010889 -0.095382 -3.7028E-05 -0.37587 -0.00014591 388.20988286290543 34.567 1.0765 32.351 31.984 33.061 -2.2158 99 30 5 0 0 0 0.70812 1 6027 6027 29.437 13.699 1 54733000 46792 5544 31140 31160 46029 46029 0.033356989596313724 TRMRHVISY 9 Unmodified _TRMRHVISY_ 0 0 0 ENST00000498309.1_1_5:132202377-132202798:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ ENST00000498309.1_1_5:132202377-132202798:+|nuORF ENST00000498309.1_1_5:132202377-132202798:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 388.209842 1161.6077 0.18054 7.0086E-05 -0.57591 -0.00022357 -0.39537 -0.00015349 388.20971327637903 34.526 1.1152 32.273 31.87 32.985 -2.2527 -0.034613 -0.00034974 NaN 53.317 112 31 6 NaN NaN NaN NaN 0 NaN NaN 0 71578000 46793 5544 31140 31160 0.033356989596313724 TRMRRRCR 8 Unmodified _TRMRRRCR_ 0 0 0 REV__ENST00000404169.7_1_12:121686461-121686515:-|nuORF REV__ENST00000404169.7_1_12:121686461-121686515:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.87786865234375 3 378.878432 1133.61347 NaN NaN NaN NaN NaN NaN NaN 10.721 1 9.8169 9.3169 10.317 -0.90401 0 0 0 0.21486 1 1365 1365 0 0 1 + 46794 21376 31141 31161 46030 46030 0.05200518990295677 TRNQEYLKRFE 11 Unmodified _TRNQEYLKRFE_ 0 0 0 KIZ|p.N428Kfs*11|1|0.35|ENSG00000088970|chr20:21163083-21163084|-/A|frameshift_variant;nc|ENSG00000088970|Q2M2Z5-3|KIZ;nc|ENSG00000088970|Q2M2Z5-4|KIZ;ENSG00000088970|ENST00000619189|KIZ KIZ|p.N428Kfs*11|1|0.35|ENSG00000088970|chr20:21163083-21163084|-/A|frameshift_variant KIZ|p.N428Kfs*11|1|0.35|ENSG00000088970|chr20:21163083-21163084|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3853149414062 2 742.386239 1482.75793 NaN NaN NaN NaN NaN NaN NaN 147.43 1 147.43 146.93 147.93 0 0 0 0 0.22632 1 29490 29490 0.0072825 0.0067181 1 46795 1742 31142 31162 46031 46031 0.035857174322245555 TRNQYEAL 8 Unmodified _TRNQYEAL_ 0 0 0 ENSG00000131738|ENST00000251646|KRT33B;CON__Q14525 ENSG00000131738|ENST00000251646|KRT33B ENSG00000131738|ENST00000251646|KRT33B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.1701354980469 3 332.169929 993.487959 NaN NaN NaN NaN NaN NaN NaN 139.6 1 134.64 134.14 135.14 -4.952 0 0 0 0.21486 1 26853 26853 1.6526 0 1 + 46796 681 31143 31163 46032 46032 -0.00904591113294373 TRPCPEGR 8 Unmodified _TRPCPEGR_ 0 0 0 ENST00000358201.8_2_16:28936921-28936999:-|nuORF ENST00000358201.8_2_16:28936921-28936999:-|nuORF ENST00000358201.8_2_16:28936921-28936999:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2358093261719 2 458.226894 914.439234 NaN NaN NaN NaN NaN NaN NaN 113.68 1 109.16 108.66 109.66 -4.5259 0 0 0 0.21486 1 21824 21824 6.7232 0.36906 1 46797 8985 31144 31164 46033 46033 -0.0214078295401805 TRPCVWGP 8 Unmodified _TRPCVWGP_ 0 0 0 nc|ENSG00000141576|Q96PX1-2|RNF157;ENSG00000141576|ENST00000269391|RNF157 nc|ENSG00000141576|Q96PX1-2|RNF157 nc|ENSG00000141576|Q96PX1-2|RNF157 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2306823730469 2 458.228905 914.443257 NaN NaN NaN NaN NaN NaN NaN 15.058 1 13.847 13.347 14.347 -1.2106 0 0 0 0.21486 1 2046 2046 2.8892 0.58649 1 46798 4386 31145 31165 46034 46034 -0.01738693460322338 TRPCVWGP 8 Unmodified _TRPCVWGP_ 0 0 0 nc|ENSG00000141576|Q96PX1-2|RNF157;ENSG00000141576|ENST00000269391|RNF157 nc|ENSG00000141576|Q96PX1-2|RNF157 nc|ENSG00000141576|Q96PX1-2|RNF157 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.230224609375 2 458.228905 914.443257 NaN NaN NaN NaN NaN NaN NaN 139.17 1 134.33 133.83 134.83 -4.8492 0 0 0 0.23782 1 26827 26827 0.12286 0 1 46799 4386 31145 31165 46035 46035 -0.01738693460322338 TRPHIAGR 8 Unmodified _TRPHIAGR_ 0 0 0 ENST00000471560.1_1_2:170680960-170681107:-|nuORF ENST00000471560.1_1_2:170680960-170681107:-|nuORF ENST00000471560.1_1_2:170680960-170681107:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 303.2062683105469 3 303.178871 906.514782 NaN NaN NaN NaN NaN NaN NaN 83.406 1 83.406 82.906 83.906 0 0 0 0 0.21486 1 16264 16264 0.40072 0 1 46800 10213 31146 31166 46036 46036 0.057785622885603516 TRPKPPPG 8 Unmodified _TRPKPPPG_ 0 0 0 REV__ENST00000310924.6_1_17:77987294-77987375:-|nuORF REV__ENST00000310924.6_1_17:77987294-77987375:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25054931640625 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 60.641 1 57.708 57.208 58.208 -2.9333 0 0 0 0.23664 1 11674 11674 3.5871 0.30575 1 + 46801 20484 31147 31167 46037 46037 0.05653239308469438 TRPKPPPG 8 Unmodified _TRPKPPPG_ 0 0 0 REV__ENST00000310924.6_1_17:77987294-77987375:-|nuORF REV__ENST00000310924.6_1_17:77987294-77987375:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.250732421875 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 60.884 1 57.951 57.451 58.451 -2.9333 0 0 0 0.23664 1 11725 11725 3.2813 0 1 + 46802 20484 31147 31167 46038 46038 0.05653239308469438 TRPLPRRHF 9 Unmodified _TRPLPRRHF_ 0 0 0 ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF ENST00000551127.5_1_12:113726380-113729792:+|nuORF ENST00000551127.5_1_12:113726380-113729792:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2678833007812 2 590.346523 1178.67849 NaN NaN NaN NaN NaN NaN NaN 158.48 1 153.21 152.71 153.71 -5.2712 0 0 0 0.1963 1 30751 30751 0.40827 0.14288 1 46803 11180 31148 31168 46039 46039 0.0963016005944155 TRQPLHQERLT 11 Unmodified _TRQPLHQERLT_ 0 0 0 REV__ENST00000470335.1_1_22:20838156-20850080:-|nuORF REV__ENST00000470335.1_1_22:20838156-20850080:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23370361328125 3 460.256508 1377.7477 NaN NaN NaN NaN NaN NaN NaN 114.87 1 110.39 109.89 110.89 -4.4726 0 0 0 0.22632 1 22638 22638 0.172 0 1 + 46804 22028 31149 31169 46040 46040 0.07393154497708565 TRRKQRRRWLL 11 Unmodified _TRRKQRRRWLL_ 0 0 0 REV__ENSG00000197471|ENST00000652691|SPN REV__ENSG00000197471|ENST00000652691|SPN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3836059570312 2 784.989666 1567.96478 NaN NaN NaN NaN NaN NaN NaN 146.79 1 146.79 146.29 147.29 0 0 0 0 0.22632 1 29361 29361 0 0 1 + 46805 19340 31150 31170 46041 46041 0.2035159456177098 TRRRHENP 8 Unmodified _TRRRHENP_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2725219726562 2 533.286663 1064.55877 NaN NaN NaN NaN NaN NaN NaN 122.46 1 117.91 117.41 118.41 -4.5476 0 0 0 0.21452 1 24141 24141 13.508 1.8676 1 46806 4201 31151 31171 46042 46042 0.029075467148913958 TRRRIRRAR 9 Unmodified _TRRRIRRAR_ 0 0 0 REV__ENSG00000171222|ENST00000305978|SCAND1 REV__ENSG00000171222|ENST00000305978|SCAND1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 414.26959228515625 3 414.269305 1239.78609 NaN NaN NaN NaN NaN NaN NaN 7.0941 1 6.0792 5.5792 6.5792 -1.0148 0 0 0 0.19631 1 541 541 0.073264 0 1 + 46807 18212 31152 31172 46043 46043 0.1757854971353936 TRRRLKPP 8 Unmodified _TRRRLKPP_ 0 0 0 REV__ENSG00000090889|ENST00000374403|KIF4A REV__ENSG00000090889|ENST00000374403|KIF4A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.8905029296875 3 341.88932 1022.64613 NaN NaN NaN NaN NaN NaN NaN 26.578 1 26.578 26.078 27.078 0 0 0 0 0.21486 1 4659 4659 0.45834 0 1 + 46808 14556 31153 31173 46044 46044 0.13571372656463154 TRRRRRSLRRR 11 Unmodified _TRRRRRSLRRR_ 0 0 0 REV__ENST00000263650.11_1_11:3143264-3147722:-|nuORF REV__ENST00000263650.11_1_11:3143264-3147722:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3878173828125 2 784.998888 1567.98322 NaN NaN NaN NaN NaN NaN NaN 145 1 140.05 139.55 140.55 -4.9445 0 0 0 0.22632 1 28022 28022 0 0 1 + 46809 20217 31154 31174 46045 46045 0.2219514925632211 TRRRRRSLRRR 11 Unmodified _TRRRRRSLRRR_ 0 0 0 REV__ENST00000263650.11_1_11:3143264-3147722:-|nuORF REV__ENST00000263650.11_1_11:3143264-3147722:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6906127929688 3 523.668351 1567.98322 0.0046391 2.4293E-06 1.239 0.00064883 1.2437 0.00065126 524.0031311774429 25.944 0.31148 24.022 23.882 24.194 -1.9222 10 8 2 0 0 0 0.96227 1 4286 4286 0.094841 0.094841 1 556620 + 46810 20217 31154 31174 46046 46046 0.2219514925632211 TRRRRTRRQKR 11 Unmodified _TRRRRTRRQKR_ 0 0 0 REV__MYH13|p.K1396Nfs*37|1|0.46|ENSG00000006788|chr17:10312751-10312751|T/-|frameshift_variant REV__MYH13|p.K1396Nfs*37|1|0.46|ENSG00000006788|chr17:10312751-10312751|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3976440429688 2 785.490896 1568.96724 NaN NaN NaN NaN NaN NaN NaN 118.56 1 118.56 118.06 119.06 0 0 0 0 0.22632 1 23352 23352 0 0 1 + 46811 23894 31155 31175 46047 46047 0.2055144301943983 TRRRYWPQES 10 Unmodified _TRRRYWPQES_ 0 0 0 REV__PIP5K1C|p.R548W|1|0.21|ENSG00000186111|chr19:3643250-3643250|G/A|missense_variant REV__PIP5K1C|p.R548W|1|0.21|ENSG00000186111|chr19:3643250-3643250|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2391357421875 3 460.237337 1377.69018 NaN NaN NaN NaN NaN NaN NaN 63.985 1 60.729 60.229 61.229 -3.2567 0 0 0 2.8426 1 12007 12007 0.063865 0 1 + 46812 24472 31156 31176 46048 46048 0.01644312292160066 TRRSRSRY 8 Unmodified _TRRSRSRY_ 0 0 0 REV__ENSG00000278803|ENST00000458091|PWWP4 REV__ENSG00000278803|ENST00000458091|PWWP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2843017578125 2 541.302313 1080.59007 NaN NaN NaN NaN NaN NaN NaN 118.08 1 113.47 112.97 113.97 -4.6106 0 0 0 0.21486 1 22658 22658 12.532 0.29089 1 + 46813 19949 31157 31177 46049 46049 0.053001197489948026 TRRYAFAHILT 11 Unmodified _TRRYAFAHILT_ 0 0 0 ENSG00000135956|ENST00000258439|TMEM127 ENSG00000135956|ENST00000258439|TMEM127 ENSG00000135956|ENST00000258439|TMEM127 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 675.1279296875 2 674.877853 1347.74115 NaN NaN NaN NaN NaN NaN NaN 168.53 1 163.74 163.24 164.24 -4.7898 0 0 0 0.22632 1 34071 34071 0.58532 0.55391 1 46814 3970 31158 31178 46050 46050 0.0811926133696943 TRSDELERHVH 11 Unmodified _TRSDELERHVH_ 0 0 0 SP7|p.R346H|1|0.24|ENSG00000170374|chr12:53328405-53328405|C/T|missense_variant SP7|p.R346H|1|0.24|ENSG00000170374|chr12:53328405-53328405|C/T|missense_variant SP7|p.R346H|1|0.24|ENSG00000170374|chr12:53328405-53328405|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23211669921875 3 460.232251 1377.67492 NaN NaN NaN NaN NaN NaN NaN 155.86 1 155.86 155.36 156.36 0 0 0 0 0.22632 1 31251 31251 0.026206 0 1 46815 25772 31159 31179 46051 46051 0.0011940070426135208 TRSDVLTTRK 10 Unmodified _TRSDVLTTRK_ 0 0 0 REV__nc|ENSG00000085415|Q96EE3|SEH1L REV__nc|ENSG00000085415|Q96EE3|SEH1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 588.8355102539062 2 588.838394 1175.66223 NaN NaN NaN NaN NaN NaN NaN 10.758 1 10.758 10.258 11.258 0 0 0 0 0.22588 1 1368 1368 0 0 1 + 46816 14475 31160 31180 46052 46052 0.08142989312000282 TRSQRKVG 8 Unmodified _TRSQRKVG_ 0 0 0 nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;ENST00000461023.5_1_16:338124-339729:-|nuORF nc|ENSG00000103126|O15169-2|AXIN1 nc|ENSG00000103126|O15169-2|AXIN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2213134765625 3 311.185914 930.535912 NaN NaN NaN NaN NaN NaN NaN 136.37 1 131.54 131.04 132.04 -4.8307 0 0 0 0.21486 1 26258 26258 0.45834 0 1 46817 2166 31161 31181 46053 46053 0.06786527597421355 TRSWKREA 8 Unmodified _TRSWKREA_ 0 0 0 ENSG00000278803|ENST00000458091|PWWP4 ENSG00000278803|ENST00000458091|PWWP4 ENSG00000278803|ENST00000458091|PWWP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.1392822265625 3 345.189435 1032.54648 NaN NaN NaN NaN NaN NaN NaN 114.66 1 110.19 109.69 110.69 -4.4726 0 0 0 0.21486 1 22594 22594 1.4819 0 1 46818 8046 31162 31182 46054 46054 0.03150510251839478 TRSYLEKLI 9 Unmodified _TRSYLEKLI_ 0 0 0 tr|U7SL62|U7SL62_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01994PE=3SV=1 tr|U7SL62|U7SL62_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01994PE=3SV=1 tr|U7SL62|U7SL62_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01994PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2229309082031 3 374.888763 1121.64446 0.15488 5.8063E-05 -0.27632 -0.00010359 -0.12144 -4.5526E-05 374.8886276337769 77.532 0.82784 77.532 77.048 77.876 0 77 23 4 0 0 0 0.20546 2 15102 15038;15102 37.075 0 1 20807000 46819 25978 31163 31183 46055;46056 46056 0.08850274057181196 TRSYLEKLI 9 Unmodified _TRSYLEKLI_ 0 0 0 tr|U7SL62|U7SL62_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01994PE=3SV=1 tr|U7SL62|U7SL62_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01994PE=3SV=1 tr|U7SL62|U7SL62_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01994PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.22296142578125 3 374.888763 1121.64446 0.0026937 1.0099E-06 -0.20217 -7.579E-05 -0.19947 -7.478E-05 374.8886676564766 81.007 1.0488 77.168 76.664 77.713 -3.8392 101 29 5 0 0 0 0.31598 1 15429 15429 30.703 0 1 16763000 46820 25978 31163 31183 46057 46057 0.08850274057181196 TRTKKKKKK 9 Unmodified _TRTKKKKKK_ 0 0 0 REV__ENST00000427154.1_1_1:23346896-23414436:-|nuORF REV__ENST00000427154.1_1_1:23346896-23414436:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 573.2368774414062 2 573.395682 1144.77681 0.14456 8.2892E-05 1.5827 0.00090749 1.7272 0.00099038 573.8968453740865 143.31 0.17102 138.29 138.21 138.38 -5.0261 6 4 2 0 0 0 0.65565 1 27624 27624 0 0 1 1472400 + 46821 21578 31164 31184 46058 46058 0.21021343584629903 TRTLATTTSR 10 Unmodified _TRTLATTTSR_ 0 0 0 ITLN1|p.G76Vfs*92|1|0.26|ENSG00000179914|chr1:160882135-160882135|C/-|frameshift_variant ITLN1|p.G76Vfs*92|1|0.26|ENSG00000179914|chr1:160882135-160882135|C/-|frameshift_variant ITLN1|p.G76Vfs*92|1|0.26|ENSG00000179914|chr1:160882135-160882135|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 369.87548828125 3 369.875405 1106.60439 NaN NaN NaN NaN NaN NaN NaN 9.7913 1 8.7566 8.2566 9.2566 -1.0347 0 0 0 0.22588 1 1021 1021 0 0 1 46822 11965 31165 31185 46059 46059 0.05534727386589111 TRTLYLRY 8 Unmodified _TRTLYLRY_ 0 0 0 nc|ENSG00000078124|Q9NUN7-2|ACER3;ENSG00000078124|ENST00000532485|ACER3 nc|ENSG00000078124|Q9NUN7-2|ACER3 nc|ENSG00000078124|Q9NUN7-2|ACER3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.77294921875 2 543.308741 1084.60293 0.40092 0.00021782 -2.6673 -0.0014491 -2.2663 -0.0012313 543.30948574281 145.93 0.17705 140.93 140.84 141.02 -5 6 4 2 0 0 0 0.70344 1 28226 28226 13.906 0 1 1671400 46823 1569 31166 31186 46060 46060 0.06401138088517655 TRTTRTRLK 9 Unmodified _TRTTRTRLK_ 0 0 0 ENST00000372523.1_1_20:44512804-44512897:+|nuORF ENST00000372523.1_1_20:44512804-44512897:+|nuORF ENST00000372523.1_1_20:44512804-44512897:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 566.8701171875 2 566.849096 1131.68364 NaN NaN NaN NaN NaN NaN NaN 9.8304 1 8.7368 8.2368 9.2368 -1.0936 0 0 0 0.23508 1 1074 1074 0 0 1 46824 9181 31167 31187 46061 46061 0.12306419131391522 TRTWSVERRRH 11 Unmodified _TRTWSVERRRH_ 0 0 0 nc|ENSG00000112053|Q96RN1-3|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8 nc|ENSG00000112053|Q96RN1-3|SLC26A8 nc|ENSG00000112053|Q96RN1-3|SLC26A8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.4014282226562 2 742.403089 1482.79163 NaN NaN NaN NaN NaN NaN NaN 150.51 1 150.51 150.01 151.01 0 0 0 0 0.23476 1 30132 30132 4.5289 1.5336 1 46825 2666 31168 31188 46062 46062 0.069541837146744 TRVDTILEF 9 Unmodified _TRVDTILEF_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000476585.5_1_2:61729332-61753650:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7930297851562 2 547.298039 1092.58152 0.33401 0.00018281 0.18195 9.9581E-05 0.51596 0.00028239 547.2982447402192 148.32 0.65735 148.32 147.95 148.61 0 28 18 2 0 0 0 0.33094 2 29653 29639;29653 29.841 2.2118 1 3806600 46826 1645 31169 31189 46063;46064 46064 0.0389370826915183 TRVDTILEF 9 Unmodified _TRVDTILEF_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000476585.5_1_2:61729332-61753650:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7825927734375 2 547.298039 1092.58152 0.31782 0.00017394 0.80916 0.00044285 1.127 0.00061679 547.2982356160137 152.66 0.64471 147.91 147.67 148.31 -4.7523 39 17 3 0 0 0 0.11219 3 30374 30310;30365;30374 51.63 7.8574 1 3451700 46827 1645 31169 31189 46065;46066;46067 46067 0.0389370826915183 TRVDTILEF 9 Unmodified _TRVDTILEF_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000476585.5_1_2:61729332-61753650:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.78955078125 2 547.298039 1092.58152 0.17244 9.4378E-05 0.27804 0.00015217 0.45049 0.00024655 547.2978948115647 153.3 0.61674 148.04 147.71 148.33 -5.2669 30 17 3 0 0 0 0.41266 3 29715 29662;29715;29740 24.991 3.2128 1 2354500 46828 1645 31169 31189 46068;46069;46070 46069 0.0389370826915183 TRVDTILEF 9 Unmodified _TRVDTILEF_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000476585.5_1_2:61729332-61753650:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7672729492188 2 547.298039 1092.58152 0.45646 0.00024982 0.10398 5.691E-05 0.56044 0.00030673 547.2981099911498 153.26 0.81064 148.04 147.5 148.31 -5.2209 45 22 3 0 0 0 0.15274 2 29690 29632;29690 43.772 1.9328 1 1993300 46829 1645 31169 31189 46071;46072 46072 0.0389370826915183 TRVIPRILAL 10 Unmodified _TRVIPRILAL_ 0 0 0 TPST1|p.F162Lfs*3|1|0.44|ENSG00000169902|chr7:66240908-66240908|T/-|frameshift_variant;ENSG00000169902|ENST00000304842|TPST1 TPST1|p.F162Lfs*3|1|0.44|ENSG00000169902|chr7:66240908-66240908|T/-|frameshift_variant TPST1|p.F162Lfs*3|1|0.44|ENSG00000169902|chr7:66240908-66240908|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3359375 2 576.384783 1150.75501 NaN NaN NaN NaN NaN NaN NaN 109.31 1 104.86 104.36 105.36 -4.4518 0 0 0 0.22588 1 20979 20979 1.4819 0 1 46830 6019 31170 31190 46073 46073 0.18566538836080326 TRWKILPR 8 Unmodified _TRWKILPR_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000476585.5_1_2:61729332-61753650:-|nuORF;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5598449707031 3 357.225821 1068.65563 0.10726 3.8314E-05 -0.96595 -0.00034506 -0.85869 -0.00030675 357.22544054061774 25.82 0.30657 24.185 23.995 24.301 -1.6347 15 8 2 0 0 0 0.79535 1 4242 4242 4.5289 4.5289 1 482980 46831 1645 31171 31191 46074 46074 0.12405140941973514 TRWKILPR 8 Unmodified _TRWKILPR_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000476585.5_1_2:61729332-61753650:-|nuORF;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.55987548828125 3 357.225821 1068.65563 -0.71292 -0.00025467 -0.2191 -7.8268E-05 -0.93202 -0.00033294 357.2257689053564 26.086 0.24591 24.164 24.053 24.299 -1.9222 9 6 2 0 0 0 0.79535 1 4308 4308 4.5289 0.65253 1 379600 46832 1645 31171 31191 46075 46075 0.12405140941973514 TRWKILPR 8 Unmodified _TRWKILPR_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000476585.5_1_2:61729332-61753650:-|nuORF;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.225821 1068.65563 0.89775 0.0003207 -1.7441 -0.00062305 -0.84637 -0.00030235 357.2250553096814 25.924 0.30813 24.276 24.106 24.414 -1.6482 0.067561 -0.00094286 NaN 4.5289 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 425760 46833 1645 31171 31191 0.12405140941973514 TRWKILPR 8 Unmodified _TRWKILPR_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000476585.5_1_2:61729332-61753650:-|nuORF;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.225821 1068.65563 -0.71292 -0.00025467 -0.2191 -7.8268E-05 -0.93202 -0.00033294 357.2257689053564 26.086 0.24591 24.164 24.053 24.299 -1.9222 -0.044439 0.00069147 NaN 4.5289 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 379600 46834 1645 31171 31191 0.12405140941973514 TRWLRWFMD 9 Unmodified _TRWLRWFMD_ 0 0 0 REV__ENST00000496992.1_1_2:192242611-192248009:+|nuORF REV__ENST00000496992.1_1_2:192242611-192248009:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 328.9793701171875 4 328.417026 1309.639 -0.42476 -0.0001395 -0.98233 -0.00032261 -1.4071 -0.00046211 328.41675200115077 23.242 0.45225 23.242 22.994 23.446 0 28 12 3 0 0 0 0.88425 1 3930 3930 0.96228 0 1 1430900 + 46835 22395 31172 31192 46076 46076 -0.0034372800628261757 TRWRWMSRRWT 11 Unmodified _TRWRWMSRRWT_ 0 0 0 REV__ENST00000330978.3_1_16:29465045-29465621:-|nuORF REV__ENST00000330978.3_1_16:29465045-29465621:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2665405273438 3 541.280882 1620.82082 0.20223 0.00010946 -0.35104 -0.00019001 -0.14881 -8.0548E-05 541.6151822045866 130.57 0.21376 125.94 125.76 125.97 -4.6359 6 5 2 0 0 0 0.66087 1 25714 25714 1.4551 0 1 954260 + 46836 20609 31173 31193 46077 46077 0.03524004739301745 TRWRWMSRRWT 11 Unmodified _TRWRWMSRRWT_ 0 0 0 REV__ENST00000330978.3_1_16:29465045-29465621:-|nuORF REV__ENST00000330978.3_1_16:29465045-29465621:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.27392578125 3 541.280882 1620.82082 NaN NaN NaN NaN NaN NaN NaN 19.953 1 18.627 18.127 19.127 -1.3251 0 0 0 0.22632 1 3073 3073 0 0 1 + 46837 20609 31173 31193 46078 46078 0.03524004739301745 TRWRWMSRRWT 11 Unmodified _TRWRWMSRRWT_ 0 0 0 REV__ENST00000330978.3_1_16:29465045-29465621:-|nuORF REV__ENST00000330978.3_1_16:29465045-29465621:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2725830078125 3 541.280882 1620.82082 NaN NaN NaN NaN NaN NaN NaN 99.573 1 95.617 95.117 96.117 -3.9564 0 0 0 0.22632 1 19120 19120 0.094841 0 1 + 46838 20609 31173 31193 46079 46079 0.03524004739301745 TRWRWMSRRWT 11 Unmodified _TRWRWMSRRWT_ 0 0 0 REV__ENST00000330978.3_1_16:29465045-29465621:-|nuORF REV__ENST00000330978.3_1_16:29465045-29465621:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 541.280882 1620.82082 0.20223 0.00010946 -0.35104 -0.00019001 -0.14881 -8.0548E-05 541.6151822045866 130.57 0.21376 125.94 125.76 125.97 -4.6359 0 0 NaN 1.4551 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 954260 + 46839 20609 31173 31193 0.03524004739301745 TRYFNLVHRFM 11 Unmodified _TRYFNLVHRFM_ 0 0 0 REV__ENSG00000102057|ENST00000218176|KCND1 REV__ENSG00000102057|ENST00000218176|KCND1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.384765625 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 138.39 1 133.47 132.97 133.97 -4.9216 0 0 0 0.23698 1 26610 26610 1.1933 0 1 + 46840 14819 31174 31194 46080 46080 0.03335590493588825 TRYHSVASA 9 Unmodified _TRYHSVASA_ 0 0 0 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.0313720703125 3 331.170041 990.488293 -0.10644 -3.5251E-05 -0.23181 -7.677E-05 -0.33826 -0.00011202 331.16991606110105 22.543 0.31541 21.089 20.91 21.226 -1.4535 16 8 2 0 0 0 0.88284 1 3613 3613 2.4985 0 1 1253300 46841 6801 31175 31195 46081 46081 -0.007331713934263462 TRYHSVASA 9 Unmodified _TRYHSVASA_ 0 0 0 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 331.170041 990.488293 -0.44212 -0.00014642 0.15474 5.1244E-05 -0.28739 -9.5174E-05 331.1700191918079 21.168 0.37891 21.168 20.984 21.362 0 0.042937 0.00043377 NaN 2.4985 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1364000 46842 6801 31175 31195 -0.007331713934263462 TRYHSVASA 9 Unmodified _TRYHSVASA_ 0 0 0 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 331.170041 990.488293 0.39711 0.00013151 -0.69479 -0.00023009 -0.29768 -9.8581E-05 331.16975946907786 22.671 0.37777 21.118 20.892 21.269 -1.5532 -0.0071468 -0.00041024 NaN 2.4985 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 933550 46843 6801 31175 31195 -0.007331713934263462 TSAAAESI 8 Unmodified _TSAAAESI_ 0 0 0 ENSG00000124214|ENST00000371856|STAU1 ENSG00000124214|ENST00000371856|STAU1 ENSG00000124214|ENST00000371856|STAU1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2184143066406 2 375.187426 748.360298 NaN NaN NaN NaN NaN NaN NaN 50.986 1 50.986 50.486 51.486 0 0 0 0 0.21486 1 9663 9663 5.2307 0 1 46844 3302 31176 31196 46082 46082 -0.02394731707329356 TSAESHIQP 9 Unmodified _TSAESHIQP_ 0 0 0 ENSG00000183273|ENST00000327554|CCDC60 ENSG00000183273|ENST00000327554|CCDC60 ENSG00000183273|ENST00000327554|CCDC60 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 487.2574157714844 2 485.235439 968.456324 1.0213 0.00049559 2.3193 0.0011254 3.3406 0.001621 485.23505365788515 27.563 0.41716 25.781 25.56 25.977 -1.7821 31 11 5 0 0 0 0.62102 1 4902 4902 11.64 0 1 2059900 46845 6837 31177 31197 46083 46083 -0.029165838672270183 TSAESHIQP 9 Unmodified _TSAESHIQP_ 0 0 0 ENSG00000183273|ENST00000327554|CCDC60 ENSG00000183273|ENST00000327554|CCDC60 ENSG00000183273|ENST00000327554|CCDC60 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 485.235439 968.456324 0.15063 7.3089E-05 1.8905 0.00091736 2.0412 0.00099045 485.2367242126449 25.826 0.69797 25.826 25.596 26.294 0 0.073822 -0.00030249 NaN 11.64 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2651600 46846 6837 31177 31197 -0.029165838672270183 TSAESHIQP 9 Unmodified _TSAESHIQP_ 0 0 0 ENSG00000183273|ENST00000327554|CCDC60 ENSG00000183273|ENST00000327554|CCDC60 ENSG00000183273|ENST00000327554|CCDC60 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 485.235439 968.456324 0.32595 0.00015816 2.5405 0.0012328 2.8665 0.0013909 485.2353890299554 27.404 0.38593 25.649 25.478 25.864 -1.7552 -0.10301 0.00032831 NaN 11.64 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1830900 46847 6837 31177 31197 -0.029165838672270183 TSAFQQQH 8 Unmodified _TSAFQQQH_ 0 0 0 ENSG00000110422|ENST00000303296|HIPK3;nc|ENSG00000110422|Q9H422-2|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1505432128906 3 316.150758 945.430444 NaN NaN NaN NaN NaN NaN NaN 33.186 1 31.039 30.539 31.539 -2.1468 0 0 0 0.21486 1 5782 5782 1.6526 0 1 46848 2574 31178 31198 46084 46084 -0.04445433318846881 TSALKPLLPR 10 Unmodified _TSALKPLLPR_ 0 0 0 ENST00000253023.7_1_19:59070165-59070261:-|nuORF ENST00000253023.7_1_19:59070165-59070261:-|nuORF ENST00000253023.7_1_19:59070165-59070261:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7688598632812 2 548.347866 1094.68118 0.014253 7.8158E-06 0.46265 0.0002537 0.47691 0.00026151 548.3489366220217 46.125 0.31168 43.259 43.067 43.378 -2.8653 10 8 2 0 0 0 0.91149 1 8361 8361 6.2058 2.9245 1 1026600 46849 8230 31179 31199 46085 46085 0.1376257067372535 TSALSKWSPA 10 Unmodified _TSALSKWSPA_ 0 0 0 REV__ENST00000370210.3_2_X:152736080-152736602:-|nuORF REV__ENST00000370210.3_2_X:152736080-152736602:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6849975585938 2 524.277106 1046.53966 -0.3082 -0.00016158 0.058649 3.0748E-05 -0.24955 -0.00013084 524.2771186366448 98.248 0.55383 93.979 93.813 94.367 -4.2692 26 15 2 0 0 0 0.78938 1 18843 18843 21.537 8.0291 1 1775100 + 46850 20973 31180 31200 46086 46086 0.01825152580613576 TSALSKWSPA 10 Unmodified _TSALSKWSPA_ 0 0 0 REV__ENST00000370210.3_2_X:152736080-152736602:-|nuORF REV__ENST00000370210.3_2_X:152736080-152736602:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 524.277106 1046.53966 -0.075235 -3.9444E-05 0.72161 0.00037833 0.64638 0.00033888 524.7791827345117 94.116 0.48233 94.116 93.864 94.346 0 0.073532 0.0007098 NaN 21.537 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1520100 + 46851 20973 31180 31200 0.01825152580613576 TSALSKWSPA 10 Unmodified _TSALSKWSPA_ 0 0 0 REV__ENST00000370210.3_2_X:152736080-152736602:-|nuORF REV__ENST00000370210.3_2_X:152736080-152736602:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.277106 1046.53966 0.12156 6.3733E-05 -0.6483 -0.00033989 -0.52673 -0.00027615 524.2767054356369 97.957 0.51555 94.037 93.821 94.336 -3.9194 -0.0054668 -0.00072663 NaN 21.537 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1332400 + 46852 20973 31180 31200 0.01825152580613576 TSAPHISAF 9 Unmodified _TSAPHISAF_ 0 0 0 REV__ENST00000582594.5_1_18:9547789-9550464:-|nuORF REV__ENST00000582594.5_1_18:9547789-9550464:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2477722167969 2 465.737617 929.460681 0.32873 0.0001531 1.1741 0.00054681 1.5028 0.00069991 465.73743650825384 74.642 0.31532 71.048 70.92 71.235 -3.594 14 8 2 0 0 0 0.77732 1 14213 14213 7.9102 0.62092 1 939740 + 46853 17199 31181 31201 46087 46087 -0.006870746536719707 TSAPTGHTF 9 Unmodified _TSAPTGHTF_ 0 0 0 nc|ENSG00000116685|Q8IYS2-2|KIAA2013;ENSG00000116685|ENST00000376572|KIAA2013 nc|ENSG00000116685|Q8IYS2-2|KIAA2013 nc|ENSG00000116685|Q8IYS2-2|KIAA2013 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2389831542969 2 459.719424 917.424296 0.18025 8.2864E-05 0.040978 1.8838E-05 0.22123 0.0001017 459.7194030187068 33.301 0.45605 31.154 30.937 31.393 -2.1468 20 12 2 0 0 0 0.6329 1 5839 5839 10.824 2.9138 1 721230 46854 12294 31182 31202 46088 46088 -0.037719515503795265 TSATTNWGDD 10 Unmodified _TSATTNWGDD_ 0 0 0 REV__nc|ENSG00000177675|Q9NR16-3|CD163L1 REV__nc|ENSG00000177675|Q9NR16-3|CD163L1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0617980957031 3 356.480721 1066.42033 -0.45015 -0.00016047 -0.95286 -0.00033968 -1.403 -0.00050015 356.4803062686986 104.28 0.57693 100.07 99.791 100.37 -4.2183 34 16 3 0 0 0 0.91149 1 20495 20495 0.62683 0.39098 1 3430700 + 46855 18570 31183 31203 46089 46089 -0.11022085834747486 TSATTNWGDD 10 Unmodified _TSATTNWGDD_ 0 0 0 REV__nc|ENSG00000177675|Q9NR16-3|CD163L1 REV__nc|ENSG00000177675|Q9NR16-3|CD163L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 356.480721 1066.42033 0.16586 5.9125E-05 -1.5468 -0.0005514 -1.3809 -0.00049228 356.480121854985 104.43 0.58757 100.09 99.833 100.42 -4.346 0.10554 -0.00020446 NaN 0.62683 32 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3162200 + 46856 18570 31183 31203 -0.11022085834747486 TSATTNWGDD 10 Unmodified _TSATTNWGDD_ 0 0 0 REV__nc|ENSG00000177675|Q9NR16-3|CD163L1 REV__nc|ENSG00000177675|Q9NR16-3|CD163L1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 356.480721 1066.42033 0.0050937 1.8158E-06 -1.5235 -0.00054311 -1.5184 -0.00054129 356.4801271157966 104.07 0.68048 100.01 99.698 100.38 -4.0543 0.029363 -0.00017958 NaN 0.62683 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3709900 + 46857 18570 31183 31203 -0.11022085834747486 TSAVPDKQD 9 Unmodified _TSAVPDKQD_ 0 0 0 REV__ENST00000481429.1_1_X:134713888-134715555:+|nuORF REV__ENST00000481429.1_1_X:134713888-134715555:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2368469238281 2 480.735271 959.45599 0.099132 4.7656E-05 0.00033381 1.6047E-07 0.099466 4.7817E-05 480.7352470842884 39.144 0.80424 36.739 36.369 37.173 -2.4049 40 22 2 0 0 0 0.52027 1 6934 6934 13.906 0 1 1383300 + 46858 17762 31184 31204 46090 46090 -0.02536003587090363 TSAWPALSP 9 Unmodified _TSAWPALSP_ 0 0 0 REV__ENST00000371655.3_1_1:52442605-52442692:-|nuORF REV__ENST00000371655.3_1_1:52442605-52442692:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.239990234375 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 56.468 1 56.468 55.968 56.968 0 0 0 0 0.20155 1 10786 10786 23.148 3.7094 1 + 46859 21011 31185 31205 46091 46091 -0.0016619051090174253 TSAYYNPG 8 Unmodified _TSAYYNPG_ 0 0 0 WBP2|p.A228T|1|0.37|ENSG00000132471|chr17:75846958-75846958|C/T|missense_variant WBP2|p.A228T|1|0.37|ENSG00000132471|chr17:75846958-75846958|C/T|missense_variant WBP2|p.A228T|1|0.37|ENSG00000132471|chr17:75846958-75846958|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2286071777344 2 436.692875 871.371197 0.30961 0.0001352 0.2333 0.00010188 0.54291 0.00023708 436.69306664773484 29.583 0.58739 27.69 27.547 28.134 -1.8928 30 16 2 0 0 0 1.0147 1 5126 5126 9.3474 9.3474 1 773140 46860 26575 31186 31206 46092 46092 -0.06963329333041202 TSCADTLRY 9 Carbamidomethyl (C) _TSC(Carbamidomethyl (C))ADTLRY_ TSC(1)ADTLRY TSC(140)ADTLRY 0 1 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;ENST00000588015.5_1_16:4721412-4726932:+|nuORF nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7893676757812 2 543.747856 1085.48116 0.5955 0.0003238 1.1908 0.00064751 1.7863 0.00097131 543.7483050991507 49.041 0.9172 49.041 48.667 49.584 0 75 25 4 0 0 0 1.4304E-05 4 9253 9252;9253;9259;9260 137.42 75.98 1 9270700 46861 2145 31187 31207 46093;46094;46095;46096 46094 2 -0.058162720561767856 TSCADTLRY 9 Carbamidomethyl (C) _TSC(Carbamidomethyl (C))ADTLRY_ TSC(1)ADTLRY TSC(150)ADTLRY 0 1 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;ENST00000588015.5_1_16:4721412-4726932:+|nuORF nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7963256835938 2 543.747856 1085.48116 NaN NaN NaN NaN NaN NaN NaN 51.952 1 49.07 48.57 49.57 -2.8824 0 0 0 4.333E-35 1 9877 9877 145.13 65.533 1 46862 2145 31187 31207 46097 46097 2 -0.058162720561767856 TSCADTLRY 9 Carbamidomethyl (C) _TSC(Carbamidomethyl (C))ADTLRY_ TSC(1)ADTLRY TSC(53)ADTLRY 0 1 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;ENST00000588015.5_1_16:4721412-4726932:+|nuORF nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.79638671875 2 543.747856 1085.48116 0.030317 1.6485E-05 0.76717 0.00041715 0.79749 0.00043363 543.7482482308766 52.169 1.0067 49.117 48.693 49.699 -3.0517 62 28 3 0 0 0 0.10699 1 9661 9661 53.404 24.917 1 9574600 46863 2145 31187 31207 46098 46098 2 -0.058162720561767856 TSCCCFRYTG 10 Unmodified _TSCCCFRYTG_ 0 0 0 REV__BMPR2|p.V231Cfs*21|1|0.4|ENSG00000204217|chr2:202518887-202518887|A/-|frameshift_variant REV__BMPR2|p.V231Cfs*21|1|0.4|ENSG00000204217|chr2:202518887-202518887|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21038818359375 3 380.813883 1139.41982 0.012514 4.7654E-06 -0.18468 -7.0328E-05 -0.17217 -6.5563E-05 380.8138031723395 48.347 0.80758 45.405 44.937 45.744 -2.9421 66 22 4 0 0 0 0.8316 1 8831 8831 14.218 0 1 13841000 + 46864 13200 31188 31208 46099 46099 -0.14431243351464218 TSCLKETYLR 10 Unmodified _TSCLKETYLR_ 0 0 0 PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.E359Kfs*96|1|0.36|ENSG00000166851|chr16:23687502-23687502|A/-|frameshift_variant PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.30010986328125 3 405.213029 1212.61726 NaN NaN NaN NaN NaN NaN NaN 37.391 1 34.922 34.422 35.422 -2.4688 0 0 0 0.22588 1 6905 6905 3.3196 1.4133 1 46865 5755 31189 31209 46100 46100 0.01945422454468826 TSDCKRVISG 10 Unmodified _TSDCKRVISG_ 0 0 0 nc|ENSG00000166596|Q8N1V2-3|CFAP52;ENSG00000166596|ENST00000352665|CFAP52;nc|ENSG00000166596|Q8N1V2-2|CFAP52;ENST00000576630.5_1_17:9487588-9546512:+|nuORF nc|ENSG00000166596|Q8N1V2-3|CFAP52 nc|ENSG00000166596|Q8N1V2-3|CFAP52 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.272216796875 2 533.271498 1064.52844 NaN NaN NaN NaN NaN NaN NaN 75.439 1 72.024 71.524 72.524 -3.4151 0 0 0 0.22544 1 14712 14712 19.257 3.4098 1 46866 5737 31190 31210 46101 46101 -0.0012399278516568302 TSDCKRVISG 10 Unmodified _TSDCKRVISG_ 0 0 0 nc|ENSG00000166596|Q8N1V2-3|CFAP52;ENSG00000166596|ENST00000352665|CFAP52;nc|ENSG00000166596|Q8N1V2-2|CFAP52;ENST00000576630.5_1_17:9487588-9546512:+|nuORF nc|ENSG00000166596|Q8N1V2-3|CFAP52 nc|ENSG00000166596|Q8N1V2-3|CFAP52 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2827758789062 2 533.271498 1064.52844 NaN NaN NaN NaN NaN NaN NaN 75.459 1 72.044 71.544 72.544 -3.4151 0 0 0 0.22544 1 14717 14717 19.257 3.1079 1 46867 5737 31190 31210 46102 46102 -0.0012399278516568302 TSDDDTWEPET 11 Unmodified _TSDDDTWEPET_ 0 0 0 ENST00000538078.1_1_12:7592002-7592584:-|nuORF ENST00000538078.1_1_12:7592002-7592584:-|nuORF ENST00000538078.1_1_12:7592002-7592584:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 432.4634094238281 3 432.50185 1294.48372 NaN NaN NaN NaN NaN NaN NaN 33.347 1 33.347 32.847 33.847 0 0 0 0 0.22632 1 6084 6084 0.0059557 0 1 46868 11046 31191 31211 46103 46103 -0.1517418990817987 TSDEIQPLY 9 Unmodified _TSDEIQPLY_ 0 0 0 ZFYVE16|p.K148Nfs*14|1|0.25|ENSG00000039319|chr5:80437124-80437124|A/-|frameshift_variant;ZFYVE16|p.N243*|1|0.25|ENSG00000039319|chr5:80437407-80437408|-/T|frameshift_variant;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ZFYVE16|p.T1329Hfs*11|2|0.35|ENSG00000039319|chr5:80459451-80459451|A/-|frameshift_variant;ENSG00000039319|ENST00000505560|ZFYVE16 ZFYVE16|p.K148Nfs*14|1|0.25|ENSG00000039319|chr5:80437124-80437124|A/-|frameshift_variant ZFYVE16|p.K148Nfs*14|1|0.25|ENSG00000039319|chr5:80437124-80437124|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2611083984375 2 533.258579 1064.50261 NaN NaN NaN NaN NaN NaN NaN 75.869 1 72.146 71.646 72.646 -3.7227 0 0 0 0.21848 1 14355 14355 18.135 3.2967 1 46869 1188 31192 31212 46104 46104 -0.02706563755782554 TSDEIQPLY 9 Unmodified _TSDEIQPLY_ 0 0 0 ZFYVE16|p.K148Nfs*14|1|0.25|ENSG00000039319|chr5:80437124-80437124|A/-|frameshift_variant;ZFYVE16|p.N243*|1|0.25|ENSG00000039319|chr5:80437407-80437408|-/T|frameshift_variant;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ZFYVE16|p.T1329Hfs*11|2|0.35|ENSG00000039319|chr5:80459451-80459451|A/-|frameshift_variant;ENSG00000039319|ENST00000505560|ZFYVE16 ZFYVE16|p.K148Nfs*14|1|0.25|ENSG00000039319|chr5:80437124-80437124|A/-|frameshift_variant ZFYVE16|p.K148Nfs*14|1|0.25|ENSG00000039319|chr5:80437124-80437124|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2850952148438 2 533.258579 1064.50261 NaN NaN NaN NaN NaN NaN NaN 75.674 1 72.04 71.54 72.54 -3.6337 0 0 0 0.21848 1 14387 14387 18.135 3.2967 1 46870 1188 31192 31212 46105 46105 -0.02706563755782554 TSDEIQPLY 9 Unmodified _TSDEIQPLY_ 0 0 0 ZFYVE16|p.K148Nfs*14|1|0.25|ENSG00000039319|chr5:80437124-80437124|A/-|frameshift_variant;ZFYVE16|p.N243*|1|0.25|ENSG00000039319|chr5:80437407-80437408|-/T|frameshift_variant;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ZFYVE16|p.T1329Hfs*11|2|0.35|ENSG00000039319|chr5:80459451-80459451|A/-|frameshift_variant;ENSG00000039319|ENST00000505560|ZFYVE16 ZFYVE16|p.K148Nfs*14|1|0.25|ENSG00000039319|chr5:80437124-80437124|A/-|frameshift_variant ZFYVE16|p.K148Nfs*14|1|0.25|ENSG00000039319|chr5:80437124-80437124|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2702026367188 2 533.258579 1064.50261 NaN NaN NaN NaN NaN NaN NaN 75.707 1 72.074 71.574 72.574 -3.6337 0 0 0 0.12545 1 14394 14394 2.6312 2.5034 1 46871 1188 31192 31212 46106 46106 -0.02706563755782554 TSDHDGKDNY 10 Unmodified _TSDHDGKDNY_ 0 0 0 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3145141601562 2 576.233624 1150.4527 -0.14543 -8.3801E-05 2.2858 0.0013172 2.1404 0.0012334 576.235114523732 56.344 0.55116 53.45 53.2 53.751 -2.8944 24 15 2 0 0 0 0.63858 1 10789 10789 17.113 3.2068 1 2482700 46872 7363 31193 31213 46107 46107 -0.11651298431752366 TSDHFETIMKY 11 Unmodified _TSDHFETIMKY_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2317810058594 3 457.879827 1370.61765 0.11668 5.3423E-05 -0.28063 -0.00012849 -0.16395 -7.5071E-05 457.8798172935259 95.451 1.1422 95.451 94.938 96.081 0 129 32 6 0 0 0 0.0022794 4 18739 18727;18739;18760;18810 111.33 92.191 1 194430000 46873 4024 31194 31214 46108;46109;46110;46111 46109 -0.05283202616305971 TSDHFETIMKY 11 Unmodified _TSDHFETIMKY_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2389221191406 3 457.879827 1370.61765 0.20706 9.4808E-05 -0.32987 -0.00015104 -0.12281 -5.6232E-05 457.87989284964846 96.353 0.68909 96.353 96.081 96.77 0 21 19 2 0 0 0 0.73684 1 18869 18869 9.2438 6.6125 1 1087600 46874 4024 31194 31214 46112 46112 -0.05283202616305971 TSDHFETIMKY 11 Unmodified _TSDHFETIMKY_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2380676269531 3 457.879827 1370.61765 -0.06809 -3.1177E-05 -0.1526 -6.9871E-05 -0.22069 -0.00010105 457.8799225222281 99.499 1.2188 95.366 94.854 96.073 -4.1326 155 34 7 0 0 0 0.0092061 2 19606 19606;19621 98.634 80.294 1 312500000 46875 4024 31194 31214 46113;46114 46113 -0.05283202616305971 TSDHFETIMKY 11 Unmodified _TSDHFETIMKY_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2388000488281 3 457.879827 1370.61765 0.1892 8.6632E-05 -0.48902 -0.00022391 -0.29982 -0.00013728 457.8797520227696 99.555 1.4956 95.285 94.861 96.356 -4.2692 161 43 6 0 0 0 0.095819 2 19124 18961;19124 70.321 59.793 1 310430000 46876 4024 31194 31214 46115;46116 46116 -0.05283202616305971 TSDHFETIMKY 11 Unmodified _TSDHFETIMKY_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.239013671875 3 457.879827 1370.61765 0.19195 8.7892E-05 -0.46324 -0.00021211 -0.27128 -0.00012422 457.87975214535993 99.182 1.374 95.225 94.764 96.138 -3.9564 155 39 6 0 0 0 0.064475 3 19016 19016;19039;19142 111.33 92.995 1 219150000 46877 4024 31194 31214 46117;46118;46119 46117 -0.05283202616305971 TSDHIFPL 8 Unmodified _TSDHIFPL_ 0 0 0 nc|ENSG00000168631|Q3MIW9|MUCL3;ENSG00000168631|ENST00000462446|MUCL3 nc|ENSG00000168631|Q3MIW9|MUCL3 nc|ENSG00000168631|Q3MIW9|MUCL3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.249755859375 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 33.856 1 31.538 31.038 32.038 -2.3175 0 0 0 0.19492 1 6202 6202 26.341 3.1929 1 46878 5924 31195 31215 46120 46120 -0.0016619051090174253 TSDHIFPL 8 Unmodified _TSDHIFPL_ 0 0 0 nc|ENSG00000168631|Q3MIW9|MUCL3;ENSG00000168631|ENST00000462446|MUCL3 nc|ENSG00000168631|Q3MIW9|MUCL3 nc|ENSG00000168631|Q3MIW9|MUCL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25836181640625 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 33.778 1 31.562 31.062 32.062 -2.2158 0 0 0 0.17294 1 5899 5899 34.187 5.7005 1 46879 5924 31195 31215 46121 46121 -0.0016619051090174253 TSDIFGSPVTA 11 Unmodified _TSDIFGSPVTA_ 0 0 0 nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2;ENST00000567717.1_1_16:1728292-1742376:+|nuORF nc|ENSG00000206053|Q9H910-2|JPT2 nc|ENSG00000206053|Q9H910-2|JPT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.77294921875 2 547.771854 1093.52915 0.1549 8.4849E-05 -0.13744 -7.5285E-05 0.01746 9.5643E-06 547.7717730735382 59.661 1.6126 56.727 55.625 57.238 -2.9333 105 45 4 0 0 0 0.61937 1 11400 11400 17.113 0 1 25489000 46880 7664 31196 31216 46122 46122 -0.01386874864465426 TSDKPLMY 8 Unmodified _TSDKPLMY_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7222595214844 2 477.733686 953.452819 -0.35981 -0.0001719 0.42064 0.00020095 0.060826 2.9059E-05 477.73383319211706 57.873 1.1713 57.873 57.41 58.581 0 91 33 4 0 0 0 0.081241 5 11061 11032;11061;11072;11117;11161 74.929 40.827 1 24413000 46881 5137 31197 31217 46123;46124;46125;46126;46127 46124 -0.02576969965457465 TSDKPLMY 8 Unmodified _TSDKPLMY_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72149658203125 2 477.733686 953.452819 0.012972 6.1972E-06 0.024448 1.168E-05 0.03742 1.7877E-05 477.7336301992111 60.902 1.1692 57.968 57.51 58.679 -2.9333 98 33 4 0 0 0 0.089098 2 11791 11770;11791 65.235 38.351 1 47501000 46882 5137 31197 31217 46128;46129 46129 -0.02576969965457465 TSDKPLMY 8 Unmodified _TSDKPLMY_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73590087890625 2 477.733686 953.452819 0.082039 3.9193E-05 0.28876 0.00013795 0.3708 0.00017714 477.73356130566987 61.079 1.6451 57.709 56.851 58.497 -3.3694 102 46 3 0 0 0 0.081241 4 11392 11392;11437;11483;11489 74.929 48.045 1 32394000 46883 5137 31197 31217 46130;46131;46132;46133 46130 -0.02576969965457465 TSDKPLMY 8 Unmodified _TSDKPLMY_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7364196777344 2 477.733686 953.452819 0.18654 8.9118E-05 -0.2102 -0.00010042 -0.023652 -1.1299E-05 477.7335494740394 61.062 1.2942 57.822 57.26 58.554 -3.2395 83 36 3 0 0 0 0.060682 3 11435 11382;11435;11475 85.272 51.17 1 32532000 46884 5137 31197 31217 46134;46135;46136 46135 -0.02576969965457465 TSDKPLQGDGY 11 Unmodified _TSDKPLQGDGY_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2603759765625 2 590.777667 1179.54078 0.26839 0.00015856 0.07562 4.4675E-05 0.34401 0.00020324 590.7776715994 40.725 0.49498 38.091 37.901 38.396 -2.6348 34 13 3 0 0 0 4.8992E-22 1 7625 7625 188.38 138.44 1 4878300 46885 4961 31198 31218 46137 46137 -0.04180677841122815 TSDKPLQGDGY 11 Unmodified _TSDKPLQGDGY_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2666015625 2 590.777667 1179.54078 0.39203 0.0002316 0.2574 0.00015206 0.64942 0.00038366 590.7777426168838 40.603 0.46243 38.063 37.85 38.313 -2.5398 30 12 3 0 0 0 1.9851E-85 1 7282 7282 240.78 190.85 1 4161200 46886 4961 31198 31218 46138 46138 -0.04180677841122815 TSDKPLQGDGY 11 Unmodified _TSDKPLQGDGY_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.261962890625 2 590.777667 1179.54078 0.1002 5.9197E-05 0.46935 0.00027728 0.56956 0.00033648 590.7778500688177 40.521 0.62883 38.032 37.83 38.459 -2.4896 23 17 2 0 0 0 0.94227 1 7320 7320 7.609 4.0125 1 2712400 46887 4961 31198 31218 46139 46139 -0.04180677841122815 TSDKPLQGDGY 11 Unmodified _TSDKPLQGDGY_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 590.777667 1179.54078 0.44044 0.0002602 0.05073 2.997E-05 0.49117 0.00029017 590.7776389825873 37.989 0.42463 37.989 37.823 38.247 0 -0.054998 -0.00020456 NaN 240.78 19 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3573000 46888 4961 31198 31218 -0.04180677841122815 TSDLGKTEL 9 Unmodified _TSDLGKTEL_ 0 0 0 ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant;ZMYM1|p.L587*|1|0.29|ENSG00000197056|chr1:35113585-35113585|T/-|frameshift_variant;ZMYM1|p.R756Sfs*8|1|0.05|ENSG00000197056|chr1:35114097-35114098|-/TGGTGCTATCATA|frameshift_variant;ENSG00000197056|ENST00000359858|ZMYM1 ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7672424316406 2 482.253297 962.492041 0.24431 0.00011782 -0.25626 -0.00012358 -0.011949 -5.7624E-06 482.25305527826396 49.67 0.58752 49.67 49.44 50.028 0 36 16 3 0 0 0 0.035659 1 9384 9384 93.166 37.663 1 4322000 46889 7324 31199 31219 46140 46140 0.009294535897652167 TSDLGKTEL 9 Unmodified _TSDLGKTEL_ 0 0 0 ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant;ZMYM1|p.L587*|1|0.29|ENSG00000197056|chr1:35113585-35113585|T/-|frameshift_variant;ZMYM1|p.R756Sfs*8|1|0.05|ENSG00000197056|chr1:35114097-35114098|-/TGGTGCTATCATA|frameshift_variant;ENSG00000197056|ENST00000359858|ZMYM1 ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76580810546875 2 482.253297 962.492041 0.091493 4.4123E-05 0.042292 2.0396E-05 0.13379 6.4518E-05 482.25323685898394 52.584 0.59331 49.497 49.168 49.761 -3.0876 28 16 2 0 0 0 0.033674 1 9690 9690 87.258 19.177 1 4246600 46890 7324 31199 31219 46141 46141 0.009294535897652167 TSDLGKTEL 9 Unmodified _TSDLGKTEL_ 0 0 0 ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant;ZMYM1|p.L587*|1|0.29|ENSG00000197056|chr1:35113585-35113585|T/-|frameshift_variant;ZMYM1|p.R756Sfs*8|1|0.05|ENSG00000197056|chr1:35114097-35114098|-/TGGTGCTATCATA|frameshift_variant;ENSG00000197056|ENST00000359858|ZMYM1 ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 482.253297 962.492041 -0.13954 -6.7296E-05 0.28479 0.00013734 0.14525 7.0047E-05 482.25337441480076 52.34 0.55296 49.457 49.17 49.723 -2.8824 -0.072848 0.00019023 NaN 78.06 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4036400 46891 7324 31199 31219 0.009294535897652167 TSDLGKTEL 9 Unmodified _TSDLGKTEL_ 0 0 0 ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant;ZMYM1|p.L587*|1|0.29|ENSG00000197056|chr1:35113585-35113585|T/-|frameshift_variant;ZMYM1|p.R756Sfs*8|1|0.05|ENSG00000197056|chr1:35114097-35114098|-/TGGTGCTATCATA|frameshift_variant;ENSG00000197056|ENST00000359858|ZMYM1 ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.253297 962.492041 -0.14551 -7.0173E-05 0.28964 0.00013968 0.14413 6.9508E-05 482.25331314822137 52.591 0.56021 49.496 49.164 49.724 -3.0954 -0.033899 0.0001949 NaN 78.06 38 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3252200 46892 7324 31199 31219 0.009294535897652167 TSDLQLAAEF 10 Unmodified _TSDLQLAAEF_ 0 0 0 ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.786376953125 2 547.771854 1093.52915 0.1549 8.4849E-05 -0.13744 -7.5285E-05 0.01746 9.5643E-06 547.7717730735382 59.661 1.6126 56.727 55.625 57.238 -2.9333 105 45 4 0 0 0 0.48672 2 11362 11268;11362 25.399 2.663 1 25489000 46893 5574 31200 31220 46142;46143 46143 -0.013868748644881634 TSDMMGRMSY 10 Unmodified _TSDMMGRMSY_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.258544921875 2 589.735577 1177.4566 0.39101 0.0002306 -0.37728 -0.0002225 0.013735 8.1001E-06 589.735325045227 36.473 0.49497 36.473 36.248 36.743 0 33 13 3 0 0 0 0.13246 1 6706 6706 51.63 11.68 1 10855000 46894 217 31201 31221 46144 46144 -0.1250299152552543 TSDMMGRMSY 10 Unmodified _TSDMMGRMSY_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 393.2909851074219 3 393.49281 1177.4566 -0.020133 -7.9221E-06 -0.17831 -7.0163E-05 -0.19844 -7.8085E-05 393.49277009216394 36.469 0.74478 36.469 36.213 36.957 0 60 20 4 0 0 0 0.91149 1 6761 6761 0.69767 0.07084 1 26737000 46895 217 31201 31221 46145 46145 -0.1250299152552543 TSDMMGRMSY 10 Unmodified _TSDMMGRMSY_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2515869140625 2 589.735577 1177.4566 0.13711 8.0858E-05 -0.30353 -0.000179 -0.16642 -9.8144E-05 589.7353423245646 38.963 0.56414 36.414 36.225 36.789 -2.5491 38 15 3 0 0 0 0.20972 1 7234 7234 43.772 9.3707 1 5467800 46896 217 31201 31221 46146 46146 -0.1250299152552543 TSDMMGRMSY 10 Unmodified _TSDMMGRMSY_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2666625976562 2 589.735577 1177.4566 0.1733 0.0001022 -0.40947 -0.00024148 -0.23617 -0.00013928 589.7353547103766 38.89 0.49176 36.485 36.198 36.69 -2.4049 34 13 3 0 0 0 0.20972 2 6924 6894;6924 43.772 9.3707 1 4707100 46897 217 31201 31221 46147;46148 46148 -0.1250299152552543 TSDMMGRMSY 10 Unmodified _TSDMMGRMSY_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 393.49281 1177.4566 -0.50841 -0.00020006 0.19319 7.6019E-05 -0.31522 -0.00012404 393.49292850713056 39.004 0.63076 36.455 36.123 36.754 -2.5491 9.632E-05 0.00029492 NaN 0.69767 57 17 5 NaN NaN NaN NaN 0 NaN NaN 0 17751000 46898 217 31201 31221 -0.1250299152552543 TSDMMGRMSY 10 Unmodified _TSDMMGRMSY_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.735577 1177.4566 0.44882 0.00026468 -0.06182 -3.6457E-05 0.387 0.00022823 589.7355127359656 38.897 0.5615 36.455 36.16 36.721 -2.4419 -0.0014736 0.00025472 NaN 51.63 46 15 4 NaN NaN NaN NaN 0 NaN NaN 0 9622100 46899 217 31201 31221 -0.1250299152552543 TSDMMGRMSY 10 Unmodified _TSDMMGRMSY_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 393.49281 1177.4566 0.030105 1.1846E-05 -0.38155 -0.00015014 -0.35145 -0.00013829 393.4926993654047 38.849 0.73202 36.407 36.089 36.821 -2.4419 -0.047841 -0.00038355 NaN 0.69767 65 20 4 NaN NaN NaN NaN 0 NaN NaN 0 25915000 46900 217 31201 31221 -0.1250299152552543 TSDMMGRMSY 10 Unmodified _TSDMMGRMSY_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 393.49281 1177.4566 -0.43133 -0.00016972 0.08466 3.3313E-05 -0.34667 -0.00013641 393.49287665495814 38.893 0.76464 36.488 36.125 36.89 -2.4049 0.033605 0.0001668 NaN 0.69767 58 21 5 NaN NaN NaN NaN 0 NaN NaN 0 16288000 46901 217 31201 31221 -0.1250299152552543 TSDNQVQYII 10 Unmodified _TSDNQVQYII_ 0 0 0 nc|ENSG00000198026|Q9H4Z2-2|ZNF335;ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant;ENSG00000198026|ENST00000322927|ZNF335 nc|ENSG00000198026|Q9H4Z2-2|ZNF335 nc|ENSG00000198026|Q9H4Z2-2|ZNF335 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2711181640625 2 590.79586 1179.57717 0.48681 0.00028761 -0.31833 -0.00018807 0.16848 9.9536E-05 590.7956469912382 78.073 0.6067 74.61 74.287 74.894 -3.4633 27 16 2 0 0 0 0.82238 1 15208 15208 22.736 5.6234 1 2785000 46902 7424 31202 31222 46149 46149 -0.005438009444333147 TSDNVIRIY 9 Unmodified _TSDNVIRIY_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2713012695312 2 540.787838 1079.56112 0.23518 0.00012718 -1.0078 -0.00054501 -0.77262 -0.00041782 540.7872293005041 98.798 0.70593 94.842 94.501 95.206 -3.9564 31 20 2 0 0 0 0.017738 1 18975 18975 114.2 60.369 1 4577400 46903 2483 31203 31223 46150 46150 0.024525376093379236 TSDPFKRKD 9 Unmodified _TSDPFKRKD_ 0 0 0 ENST00000580548.5_1_17:66244218-66245202:+|nuORF ENST00000580548.5_1_17:66244218-66245202:+|nuORF ENST00000580548.5_1_17:66244218-66245202:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7866821289062 2 547.285463 1092.55637 0.1742 9.5335E-05 -0.64907 -0.00035522 -0.47487 -0.00025989 547.2851115772969 56.049 0.52997 56.049 55.728 56.258 0 24 14 2 0 0 0 0.55979 1 10709 10709 15.847 2.8047 1 2409000 46904 11498 31204 31224 46151 46151 0.01379653466574382 TSDPPVHRW 9 Unmodified _TSDPPVHRW_ 0 0 0 REV__ENST00000298894.4_1_14:93650993-93651212:-|nuORF REV__ENST00000298894.4_1_14:93650993-93651212:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7714233398438 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 79.1 1 75.59 75.09 76.09 -3.5102 0 0 0 0.14843 1 15446 15446 30.637 9.0996 1 + 46905 20388 31205 31225 46152 46152 -0.012531959850548446 TSDPPVHRW 9 Unmodified _TSDPPVHRW_ 0 0 0 REV__ENST00000298894.4_1_14:93650993-93651212:-|nuORF REV__ENST00000298894.4_1_14:93650993-93651212:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7721557617188 2 547.772522 1093.53049 -0.017209 -9.4268E-06 0.53122 0.00029099 0.51401 0.00028156 547.7722624927029 79.048 0.84034 75.243 74.841 75.681 -3.8048 45 23 3 0 0 0 0.31714 1 15020 15020 30.637 7.9003 1 2719300 + 46906 20388 31205 31225 46153 46153 -0.012531959850548446 TSDPPVHRW 9 Unmodified _TSDPPVHRW_ 0 0 0 REV__ENST00000298894.4_1_14:93650993-93651212:-|nuORF REV__ENST00000298894.4_1_14:93650993-93651212:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7718505859375 2 547.772522 1093.53049 0.030699 1.6816E-05 0.22362 0.00012249 0.25432 0.00013931 547.7721046580657 78.961 0.8027 75.285 74.851 75.654 -3.676 35 22 2 0 0 0 0.31714 2 15086 15073;15086 30.637 5.6456 1 3052000 + 46907 20388 31205 31225 46154;46155 46155 -0.012531959850548446 TSDQATLLLY 10 Unmodified _TSDQATLLLY_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;nc|ENSG00000141627|Q7RTS9-2|DYM nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 562.8471069335938 2 562.795329 1123.5761 0.10258 5.7731E-05 0.73532 0.00041383 0.8379 0.00047157 562.7955530746796 148.55 0.91124 143.4 142.94 143.85 -5.1557 66 25 4 0 0 0 0.95675 1 28743 28743 69.679 62.202 1 11031000 46908 4388 31206 31226 46156 46156 0.01925984686704396 TSDQATLLLY 10 Unmodified _TSDQATLLLY_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;nc|ENSG00000141627|Q7RTS9-2|DYM nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 562.795329 1123.5761 0.28981 0.0001631 -0.34697 -0.00019527 -0.057157 -3.2168E-05 562.7952904151808 143.1 1.0353 143.1 142.62 143.65 0 -0.22306 -0.00053121 NaN 69.679 54 29 3 NaN NaN NaN NaN 0 NaN NaN 0 7584200 46909 4388 31206 31226 0.01925984686704396 TSDQATLLLY 10 Unmodified _TSDQATLLLY_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;nc|ENSG00000141627|Q7RTS9-2|DYM nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 562.795329 1123.5761 0.016642 9.366E-06 0.14836 8.3499E-05 0.16501 9.2865E-05 562.7954961838883 148.15 0.97047 143.44 142.93 143.9 -4.7095 0.12269 2.6333E-05 NaN 69.679 65 27 3 NaN NaN NaN NaN 0 NaN NaN 0 11178000 46910 4388 31206 31226 0.01925984686704396 TSDQATLLLY 10 Unmodified _TSDQATLLLY_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;nc|ENSG00000141627|Q7RTS9-2|DYM nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 562.795329 1123.5761 0.36654 0.00020629 -0.017708 -9.9659E-06 0.34884 0.00019632 562.7952992707754 148.4 0.86235 143.34 142.88 143.74 -5.0595 0.022369 -0.0001606 NaN 69.679 54 24 3 NaN NaN NaN NaN 0 NaN NaN 0 7778600 46911 4388 31206 31226 0.01925984686704396 TSDQEGDSSFG 11 Unmodified _TSDQEGDSSFG_ 0 0 0 ENSG00000106404|ENST00000308344|CLDN15 ENSG00000106404|ENST00000308344|CLDN15 ENSG00000106404|ENST00000308344|CLDN15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.8121337890625 3 377.147519 1128.42073 -0.29434 -0.00011101 -1.0601 -0.0003998 -1.3544 -0.00051081 377.14709308490694 86.848 0.73676 83.121 82.837 83.574 -3.727 52 20 3 0 0 0 0.87553 1 16965 16965 6.6924 5.8475 1 13585000 46912 2383 31207 31227 46157 46157 -0.13834710905553038 TSDQEGDSSFG 11 Unmodified _TSDQEGDSSFG_ 0 0 0 ENSG00000106404|ENST00000308344|CLDN15 ENSG00000106404|ENST00000308344|CLDN15 ENSG00000106404|ENST00000308344|CLDN15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 377.147519 1128.42073 0.29928 0.00011287 -1.6352 -0.0006167 -1.3359 -0.00050383 377.1468568355338 86.998 0.842 83.048 82.718 83.56 -3.9503 -0.054605 -0.000546 NaN 6.6924 62 23 4 NaN NaN NaN NaN 0 NaN NaN 0 8702200 46913 2383 31207 31227 -0.13834710905553038 TSDQEGDSSFG 11 Unmodified _TSDQEGDSSFG_ 0 0 0 ENSG00000106404|ENST00000308344|CLDN15 ENSG00000106404|ENST00000308344|CLDN15 ENSG00000106404|ENST00000308344|CLDN15 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 377.147519 1128.42073 -0.57402 -0.00021649 -0.75131 -0.00028335 -1.3253 -0.00049984 377.1471897589355 86.868 0.81397 83.139 82.728 83.542 -3.7289 0.036161 0.00045404 NaN 6.6924 57 22 3 NaN NaN NaN NaN 0 NaN NaN 0 8049900 46914 2383 31207 31227 -0.13834710905553038 TSDQLRAAT 9 Unmodified _TSDQLRAAT_ 0 0 0 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant;ADGRL3|p.W832Lfs*13|1|0.39|ENSG00000150471|chr4:61948167-61948168|-/T|frameshift_variant;ADGRL3|p.Y966Lfs*9|1|0.19|ENSG00000150471|chr4:61983464-61983465|-/T|frameshift_variant;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;ADGRL3|p.H1275Lfs*11|1|0.08|ENSG00000150471|chr4:62070322-62070322|A/-|frameshift_variant;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-3|ADGRL3 ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant ADGRL3|p.S1005Nfs*24|1|0.05|ENSG00000150471|chr4:61983584-61983585|-/ACATCCAG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2533264160156 2 481.748713 961.482873 1.1286 0.00054371 -2.5505 -0.0012287 -1.4219 -0.00068498 481.74563085853384 26.454 0.27653 24.672 24.517 24.794 -1.7821 10 7 2 0 0 0 0.76271 1 4664 4664 10.074 0 1 225780 46915 82 31208 31228 46158 46158 0.0005910502410415575 TSDQTGLAY 9 Unmodified _TSDQTGLAY_ 0 0 0 REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72369384765625 2 478.221997 954.429441 -0.23091 -0.00011043 0.46485 0.0002223 0.23395 0.00011188 478.22218828217626 35.003 0.56136 32.609 32.318 32.88 -2.3938 36 15 3 0 0 0 0.25183 1 6404 6404 34.402 1.616 1 4437300 + 46916 15966 31209 31229 46159 46159 -0.04959692478428224 TSDQTGLAY 9 Unmodified _TSDQTGLAY_ 0 0 0 REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.221997 954.429441 0.1666 7.9673E-05 -0.046174 -2.2082E-05 0.12043 5.7591E-05 478.22196724218344 34.899 0.62822 32.646 32.324 32.952 -2.2527 -0.01404 -0.00014119 NaN 34.402 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4220400 + 46917 15966 31209 31229 -0.04959692478428224 TSDQTGLAY 9 Unmodified _TSDQTGLAY_ 0 0 0 REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.221997 954.429441 0.34843 0.00016663 -0.17126 -8.1901E-05 0.17717 8.4726E-05 478.22187615007914 34.908 0.55302 32.631 32.308 32.861 -2.2766 -0.029298 -0.00026083 NaN 34.402 39 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3655000 + 46918 15966 31209 31229 -0.04959692478428224 TSDQVSVEEW 10 Unmodified _TSDQVSVEEW_ 0 0 0 REV__OSMR|p.N900Tfs*3|1|0.34|ENSG00000145623|chr5:38933197-38933197|A/-|frameshift_variant REV__OSMR|p.N900Tfs*3|1|0.34|ENSG00000145623|chr5:38933197-38933197|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2603759765625 2 590.26185 1178.50915 NaN NaN NaN NaN NaN NaN NaN 40.865 1 38.23 37.73 38.73 -2.6348 0 0 0 0.22544 1 7625 7625 19.257 2.1441 1 + 46919 16843 31210 31230 46160 46160 -0.07296670595087562 TSDSQFSSGM 10 Unmodified _TSDSQFSSGM_ 0 0 0 ENST00000586068.5_1_19:37721355-37726669:+|nuORF ENST00000586068.5_1_19:37721355-37726669:+|nuORF ENST00000586068.5_1_19:37721355-37726669:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6937255859375 2 523.708396 1045.40224 NaN NaN NaN NaN NaN NaN NaN 82.32 1 78.446 77.946 78.946 -3.8736 0 0 0 0.21103 1 15640 15640 26.268 0.86883 1 46920 11543 31211 31231 46161 46161 -0.11864544081095119 TSDTIHIS 8 Unmodified _TSDTIHIS_ 0 0 0 FLRT3|p.I542Rfs*9|1|0.03|ENSG00000125848|chr20:14325882-14325883|-/CTCTATCC|frameshift_variant;ENSG00000125848|ENST00000341420|FLRT3 FLRT3|p.I542Rfs*9|1|0.03|ENSG00000125848|chr20:14325882-14325883|-/CTCTATCC|frameshift_variant FLRT3|p.I542Rfs*9|1|0.03|ENSG00000125848|chr20:14325882-14325883|-/CTCTATCC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2190246582031 2 437.219257 872.423961 0.16678 7.2918E-05 -0.10627 -4.6462E-05 0.060511 2.6457E-05 437.2191843119361 33.54 1.1188 33.54 33.059 34.178 0 71 31 3 0 0 0 8448 1 6059 6059 0.25148 0.18749 1 5196100 46921 3397 31212 31232 46162 46162 -0.01735371270228825 TSDTTIKS 8 Unmodified _TSDTTIKS_ 0 0 0 REV__ENSG00000261272|ENST00000561890|MUC22 REV__ENSG00000261272|ENST00000561890|MUC22 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.2076721191406 2 426.71909 851.423627 NaN NaN NaN NaN NaN NaN NaN 54.962 1 51.824 51.324 52.324 -3.1377 0 0 0 0.21486 1 10189 10189 7.9102 0 1 + 46922 19887 31213 31233 46163 46163 -0.008027909900874874 TSDTVQHGAVY 11 Unmodified _TSDTVQHGAVY_ 0 0 0 ENSG00000143751|ENST00000272091|SDE2 ENSG00000143751|ENST00000272091|SDE2 ENSG00000143751|ENST00000272091|SDE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2763061523438 2 589.277835 1176.54112 0.29761 0.00017538 -0.52078 -0.00030689 -0.22317 -0.00013151 589.2776854686238 36.047 0.56168 33.77 33.49 34.052 -2.2766 35 15 3 0 0 0 0.22021 1 6346 6346 63.961 39.94 1 2751900 46923 4515 31214 31234 46164 46164 -0.04009258121277526 TSDTVQHGAVY 11 Unmodified _TSDTVQHGAVY_ 0 0 0 ENSG00000143751|ENST00000272091|SDE2 ENSG00000143751|ENST00000272091|SDE2 ENSG00000143751|ENST00000272091|SDE2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 589.277835 1176.54112 0.34558 0.00020364 -0.15829 -9.3274E-05 0.1873 0.00011037 589.2777640648601 33.606 0.63063 33.606 33.271 33.901 0 -0.1311 0.00012301 NaN 63.961 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3078400 46924 4515 31214 31234 -0.04009258121277526 TSDTVQHGAVY 11 Unmodified _TSDTVQHGAVY_ 0 0 0 ENSG00000143751|ENST00000272091|SDE2 ENSG00000143751|ENST00000272091|SDE2 ENSG00000143751|ENST00000272091|SDE2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 589.277835 1176.54112 0.0078922 4.6507E-06 -0.094227 -5.5526E-05 -0.086335 -5.0875E-05 589.2778276906026 36.161 0.63616 33.767 33.417 34.054 -2.3938 0.030363 0.0001985 NaN 63.961 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3298800 46925 4515 31214 31234 -0.04009258121277526 TSDTVQHGAVY 11 Unmodified _TSDTVQHGAVY_ 0 0 0 ENSG00000143751|ENST00000272091|SDE2 ENSG00000143751|ENST00000272091|SDE2 ENSG00000143751|ENST00000272091|SDE2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.277835 1176.54112 0.53579 0.00031573 -0.35724 -0.00021052 0.17855 0.00010521 589.277684653148 36.105 0.52701 33.805 33.49 34.017 -2.3003 0.06751 -0.00011148 NaN 63.961 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3581800 46926 4515 31214 31234 -0.04009258121277526 TSDVETGILF 10 Unmodified _TSDVETGILF_ 0 0 0 REV__tr|U7SQS6|U7SQS6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01672PE=4SV=1 REV__tr|U7SQS6|U7SQS6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01672PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.276123046875 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 113.58 1 113.58 113.08 114.08 0 0 0 0 2.8426 1 22335 22335 0.20733 0.19406 1 + 46927 25013 31215 31235 46165 46165 -0.0031399072172462184 TSDVLANVTY 10 Unmodified _TSDVLANVTY_ 0 0 0 nc|ENSG00000155066|Q8N271-3|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF;nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2 nc|ENSG00000155066|Q8N271-3|PROM2 nc|ENSG00000155066|Q8N271-3|PROM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.260986328125 2 541.771854 1081.52915 0.14427 7.8159E-05 -2.6516 -0.0014366 -2.5074 -0.0013584 541.7702842015665 74.639 0.35995 71.275 71.127 71.487 -3.3643 13 9 2 0 0 0 0.59264 1 14581 14581 22.736 11.242 1 758530 46928 5031 31216 31236 46166 46166 -0.008348748644721127 TSDVNKLSSFY 11 Unmodified _TSDVNKLSSFY_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5;SERPINB5|p.N223Ifs*59|1|0.37|ENSG00000206075|chr18:63499217-63499217|A/-|frameshift_variant ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7554321289062 2 630.808968 1259.60338 0.48244 0.00030433 -0.43472 -0.00027422 0.047727 3.0106E-05 630.808882860696 107.65 0.45078 103.33 103.07 103.52 -4.32 17 12 2 0 0 0 0.153 2 21200 21154;21200 66.683 33.897 1 1432600 46929 7665 31217 31237 46167;46168 46168 -0.016035317729574672 TSDVNKLSSFY 11 Unmodified _TSDVNKLSSFY_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5;SERPINB5|p.N223Ifs*59|1|0.37|ENSG00000206075|chr18:63499217-63499217|A/-|frameshift_variant ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7490844726562 2 630.808968 1259.60338 0.17151 0.00010819 -0.31461 -0.00019846 -0.1431 -9.0267E-05 630.8088067825147 107.74 0.45478 103.33 103.12 103.58 -4.4121 18 12 2 0 0 0 0.095872 3 20666 20655;20666;20683 70.496 47.17 1 1282400 46930 7665 31217 31237 46169;46170;46171 46170 -0.016035317729574672 TSDVPGFK 8 Unmodified _TSDVPGFK_ 0 0 0 REV__ENSG00000153989|ENST00000368494|NUS1 REV__ENSG00000153989|ENST00000368494|NUS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2446594238281 2 425.718893 849.423233 0.10024 4.2675E-05 0.41479 0.00017658 0.51503 0.00021926 425.7189686599831 36.192 0.38988 33.844 33.616 34.006 -2.3479 13 10 2 0 0 0 0.98792 1 6376 6376 9.3474 4.1168 1 268240 + 46931 17163 31218 31238 46172 46172 -0.0075016591927123955 TSDVPGFK 8 Unmodified _TSDVPGFK_ 0 0 0 REV__ENSG00000153989|ENST00000368494|NUS1 REV__ENSG00000153989|ENST00000368494|NUS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 425.718893 849.423233 0.10169 4.329E-05 0.31613 0.00013458 0.41782 0.00017787 425.71895224043203 34.006 0.41688 34.006 33.795 34.212 0 0.097829 -0.0001158 NaN 9.3474 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 524140 + 46932 17163 31218 31238 -0.0075016591927123955 TSDVPGFK 8 Unmodified _TSDVPGFK_ 0 0 0 REV__ENSG00000153989|ENST00000368494|NUS1 REV__ENSG00000153989|ENST00000368494|NUS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 425.718893 849.423233 -0.58134 -0.00024749 0.69359 0.00029528 0.11225 4.7788E-05 425.7192595169521 36.268 0.35209 33.874 33.701 34.054 -2.3938 -0.033773 0.00020558 NaN 9.3474 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 627670 + 46933 17163 31218 31238 -0.0075016591927123955 TSDWGWNKW 9 Unmodified _TSDWGWNKW_ 0 0 0 REV__ENST00000591501.1_1_19:10763903-10764383:-|nuORF REV__ENST00000591501.1_1_19:10763903-10764383:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2666015625 2 590.26453 1178.51451 NaN NaN NaN NaN NaN NaN NaN 40.618 1 38.078 37.578 38.578 -2.5398 0 0 0 0.22621 1 7282 7282 15.847 3.6065 1 + 46934 23340 31219 31239 46173 46173 -0.06760902221958531 TSDWYMNGNY 10 Unmodified _TSDWYMNGNY_ 0 0 0 SLC38A3|p.K181N|1|0.13|ENSG00000188338|chr3:50215816-50215816|A/C|missense_variant;SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant;ENSG00000188338|ENST00000614032|SLC38A3 SLC38A3|p.K181N|1|0.13|ENSG00000188338|chr3:50215816-50215816|A/C|missense_variant SLC38A3|p.K181N|1|0.13|ENSG00000188338|chr3:50215816-50215816|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 419.1671447753906 3 417.497606 1249.47099 0.36168 0.000151 1.2325 0.00051458 1.5942 0.00066558 417.49854240469693 48.364 0.77487 48.364 48.068 48.843 0 106 21 7 0 0 0 0.43598 1 9124 9124 0.063865 0.020077 1 41549000 46935 7164 31220 31240 46174 46174 -0.14376879781389107 TSDYSNNY 8 Unmodified _TSDYSNNY_ 0 0 0 tr|U7SSX8|U7SSX8_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01539PE=4SV=1 tr|U7SSX8|U7SSX8_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01539PE=4SV=1 tr|U7SSX8|U7SSX8_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01539PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7672424316406 2 482.188154 962.361755 0.26099 0.00012585 -0.12555 -6.0538E-05 0.13544 6.5309E-05 482.1880539586593 49.269 1.0426 49.269 48.915 49.958 0 50 29 2 0 0 0 0.56049 1 9384 9384 24.674 15.291 1 2148900 46936 26116 31221 31241 46175 46175 -0.12093142409230495 TSEACCCC 8 Unmodified _TSEACCCC_ 0 0 0 ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC;nc|ENSG00000135272|Q9P1T7-1|MDFIC ENST00000431629.5_2_7:114654517-114655986:+|nuORF ENST00000431629.5_2_7:114654517-114655986:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 410.1196594238281 2 410.110635 818.206716 NaN NaN NaN NaN NaN NaN NaN 79.691 1 76.015 75.515 76.515 -3.676 0 0 0 0.21486 1 15187 15187 0.69038 0 1 46937 3912 31222 31242 46176 46176 -0.20965872402814512 TSEAKLVCHV 10 Unmodified _TSEAKLVCHV_ 0 0 0 ENST00000546901.1_1_14:75287765-75294094:+|nuORF ENST00000546901.1_1_14:75287765-75294094:+|nuORF ENST00000546901.1_1_14:75287765-75294094:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7836303710938 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 52.666 1 49.57 49.07 50.07 -3.0954 0 0 0 2.8426 1 9727 9727 0.26539 0 1 46938 11136 31223 31243 46177 46177 0.0145748173724769 TSEALRID 8 Unmodified _TSEALRID_ 0 0 0 ENST00000548047.5_1_12:56333897-56335920:+|nuORF;ENST00000551739.5_1_12:56333995-56337187:+|nuORF;ENSG00000065357|ENST00000331886|DGKA ENST00000548047.5_1_12:56333897-56335920:+|nuORF ENST00000548047.5_1_12:56333897-56335920:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 452.2598571777344 2 452.740357 903.46616 0.23139 0.00010476 -0.67772 -0.00030683 -0.44634 -0.00020207 452.7400843787421 28.508 0.31367 26.753 26.597 26.911 -1.7552 13 8 2 0 0 0 0.89225 1 4789 4789 6.2058 0 1 780120 46939 1356 31224 31244 46178 46178 0.010566041381480318 TSEALRID 8 Unmodified _TSEALRID_ 0 0 0 ENST00000548047.5_1_12:56333897-56335920:+|nuORF;ENST00000551739.5_1_12:56333995-56337187:+|nuORF;ENSG00000065357|ENST00000331886|DGKA ENST00000548047.5_1_12:56333897-56335920:+|nuORF ENST00000548047.5_1_12:56333897-56335920:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 452.740357 903.46616 0.30417 0.00013771 -0.44186 -0.00020005 -0.13769 -6.234E-05 452.7401707944431 26.866 0.34246 26.866 26.702 27.044 0 0.12308 0.00015441 NaN 6.2058 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 691020 46940 1356 31224 31244 0.010566041381480318 TSEALRID 8 Unmodified _TSEALRID_ 0 0 0 ENST00000548047.5_1_12:56333897-56335920:+|nuORF;ENST00000551739.5_1_12:56333995-56337187:+|nuORF;ENSG00000065357|ENST00000331886|DGKA ENST00000548047.5_1_12:56333897-56335920:+|nuORF ENST00000548047.5_1_12:56333897-56335920:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 452.740357 903.46616 0.64267 0.00029096 -1.079 -0.00048852 -0.43636 -0.00019756 452.73986710876164 28.611 0.30777 26.655 26.502 26.81 -1.9561 -0.087711 -0.00042253 NaN 6.2058 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 804930 46941 1356 31224 31244 0.010566041381480318 TSEALRID 8 Unmodified _TSEALRID_ 0 0 0 ENST00000548047.5_1_12:56333897-56335920:+|nuORF;ENST00000551739.5_1_12:56333995-56337187:+|nuORF;ENSG00000065357|ENST00000331886|DGKA ENST00000548047.5_1_12:56333897-56335920:+|nuORF ENST00000548047.5_1_12:56333897-56335920:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 452.740357 903.46616 0.31076 0.00014069 -0.4397 -0.00019907 -0.12894 -5.8376E-05 452.74015840135087 28.694 0.31049 26.698 26.519 26.829 -1.9962 -0.04548 0.00015637 NaN 6.2058 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 495970 46942 1356 31224 31244 0.010566041381480318 TSEAPFLHY 9 Unmodified _TSEAPFLHY_ 0 0 0 ENSG00000102879|ENST00000219150|CORO1A ENSG00000102879|ENST00000219150|CORO1A ENSG00000102879|ENST00000219150|CORO1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2696533203125 2 532.756007 1063.49746 -0.050115 -2.6699E-05 -1.4222 -0.00075767 -1.4723 -0.00078436 533.2573230580421 45.948 0.10109 43.081 42.996 43.097 -2.8666 4 2 2 0 0 0 0.8319 1 8347 8347 12.532 3.5553 1 372380 46943 2148 31225 31245 46179 46179 -0.031748228277592716 TSECPRQEVC 10 Unmodified _TSECPRQEVC_ 0 0 0 ENST00000609106.5_1_7:124569519-124569627:-|nuORF ENST00000609106.5_1_7:124569519-124569627:-|nuORF ENST00000609106.5_1_7:124569519-124569627:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3348388671875 2 576.244623 1150.47469 NaN NaN NaN NaN NaN NaN NaN 53.127 1 53.127 52.627 53.627 0 0 0 0 0.22588 1 10111 10111 6.7232 0 1 46944 11767 31226 31246 46180 46180 -0.09452533279181807 TSEDGSYGT 9 Unmodified _TSEDGSYGT_ 0 0 0 KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.K873Nfs*8|4|0.41|ENSG00000005483|chr7:105106538-105106538|A/-|frameshift_variant;KMT2E|p.T553Nfs*4|1|0.43|ENSG00000005483|chr7:105091243-105091244|-/A|frameshift_variant;KMT2E|p.T553Lfs*7|1|0.44|ENSG00000005483|chr7:105091244-105091244|A/-|frameshift_variant;KMT2E|p.R802Kfs*8|1|0.35|ENSG00000005483|chr7:105105640-105105641|-/A|frameshift_variant;nc|ENSG00000005483|Q8IZD2-4|KMT2E;ENST00000468607.1_1_7:104702713-104704028:+|nuORF;KMT2E|p.R227Efs*77|1|0.13|ENSG00000005483|chr7:105074762-105074762|A/-|frameshift_variant;KMT2E|p.K347Rfs*5|1|0.04|ENSG00000005483|chr7:105077341-105077342|AA/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-3|KMT2E KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-3|KMT2E KMT2E|p.L1610Cfs*16|1|0.09|ENSG00000005483|chr7:105112580-105112580|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2396240234375 2 458.680162 915.345771 NaN NaN NaN NaN NaN NaN NaN 25.166 1 23.518 23.018 24.018 -1.6482 0 0 0 0.23508 1 4409 4409 11.64 1.4569 1 46945 993;12204 31227 31247 46181 46181 -0.11528848646116785 TSEDHSNQ 8 Unmodified _TSEDHSNQ_ 0 0 0 ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A ENSG00000075673|ENST00000381946|ATP12A ENSG00000075673|ENST00000381946|ATP12A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.7925720214844 3 306.458027 916.352253 NaN NaN NaN NaN NaN NaN NaN 33.45 1 33.45 32.95 33.95 0 0 0 0 0.23837 1 6106 6106 0 0 1 46946 1524 31228 31248 46182 46182 -0.10926910694740855 TSEDISQTSKY 11 Unmodified _TSEDISQTSKY_ 0 0 0 nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3;ENSG00000173210|ENST00000309868|ABLIM3 nc|ENSG00000173210|O94929-2|ABLIM3 nc|ENSG00000173210|O94929-2|ABLIM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7649536132812 2 629.793514 1257.57248 0.41161 0.00025923 -0.02287 -1.4403E-05 0.38874 0.00024483 629.793444349272 32.706 0.52108 32.706 32.399 32.92 0 45 14 4 0 0 0 0.059811 1 5923 5923 124.95 95.871 1 11714000 46947 6275 31229 31249 46183 46183 -0.04600729877847698 TSEDISQTSKY 11 Unmodified _TSEDISQTSKY_ 0 0 0 nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3;ENSG00000173210|ENST00000309868|ABLIM3 nc|ENSG00000173210|O94929-2|ABLIM3 nc|ENSG00000173210|O94929-2|ABLIM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.754638671875 2 629.793514 1257.57248 0.68589 0.00043197 -0.26703 -0.00016817 0.41886 0.00026379 629.7933162086733 35.168 0.59938 32.775 32.491 33.091 -2.3938 50 16 4 0 0 0 0.0072328 1 6460 6460 135.86 107.38 1 13480000 46948 6275 31229 31249 46184 46184 -0.04600729877847698 TSEDISQTSKY 11 Unmodified _TSEDISQTSKY_ 0 0 0 nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3;ENSG00000173210|ENST00000309868|ABLIM3 nc|ENSG00000173210|O94929-2|ABLIM3 nc|ENSG00000173210|O94929-2|ABLIM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7546997070312 2 629.793514 1257.57248 0.40338 0.00025405 -0.010486 -6.604E-06 0.3929 0.00024744 629.7934596152539 35.115 0.59039 32.862 32.57 33.16 -2.2527 50 16 4 0 0 0 0.009619 4 6194 6139;6141;6143;6194 97.741 71.473 1 13345000 46949 6275 31229 31249 46185;46186;46187;46188 46188 -0.04600729877847698 TSEDISQTSKY 11 Unmodified _TSEDISQTSKY_ 0 0 0 nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3;ENSG00000173210|ENST00000309868|ABLIM3 nc|ENSG00000173210|O94929-2|ABLIM3 nc|ENSG00000173210|O94929-2|ABLIM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7665405273438 2 629.793514 1257.57248 0.57121 0.00035974 -0.19172 -0.00012074 0.37949 0.000239 629.7933708015861 35.109 0.54965 32.832 32.556 33.106 -2.2766 47 15 4 0 0 0 0.021748 2 6190 6190;6193 73.196 46.928 1 12657000 46950 6275 31229 31249 46189;46190 46189 -0.04600729877847698 TSEDQGQRRML 11 Unmodified _TSEDQGQRRML_ 0 0 0 REV__nc|ENSG00000154743|Q8NCE0-5|TSEN2 REV__nc|ENSG00000154743|Q8NCE0-5|TSEN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 440.8841247558594 3 440.882342 1319.6252 NaN NaN NaN NaN NaN NaN NaN 23.55 1 23.55 23.05 24.05 0 0 0 0 0.23698 1 4021 4021 1.2148 0.51716 1 + 46951 17193 31230 31250 46191 46191 -0.021830502960256126 TSEEDEDYV 9 Unmodified _TSEEDEDYV_ 0 0 0 ENST00000566254.1_2_16:75453071-75467250:-|nuORF;ENST00000565646.5_1_16:75446626-75467250:-|nuORF;nc|ENSG00000153774|Q9UEE9-2|CFDP1;ENST00000566901.5_1_16:75428986-75467250:-|nuORF;ENSG00000153774|ENST00000283882|CFDP1 ENST00000566254.1_2_16:75453071-75467250:-|nuORF ENST00000566254.1_2_16:75453071-75467250:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7879028320312 2 543.709116 1085.40368 0.19141 0.00010407 -0.34722 -0.00018878 -0.1558 -8.4712E-05 543.708477418178 71.091 0.51398 71.091 70.868 71.382 0 24 14 2 0 0 0 0.79204 1 13772 13772 7.2892 0 1 4468100 46952 4976 31231 31251 46192 46192 -0.1356063151138187 TSEGPIKEAY 10 Unmodified _TSEGPIKEAY_ 0 0 0 REV__ENST00000478856.5_1_3:100053614-100067682:+|nuORF REV__ENST00000478856.5_1_3:100053614-100067682:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7841186523438 2 547.771854 1093.52915 0.43585 0.00023875 0.3068 0.00016806 0.74265 0.0004068 548.2743670531078 100.87 0.13962 96.876 96.753 96.892 -3.9895 5 3 2 0 0 0 0.59928 1 19376 19376 19.257 4.0085 1 464730 + 46953 15360 31232 31252 46193 46193 -0.013868748644881634 TSEIEKNLN 9 Unmodified _TSEIEKNLN_ 0 0 0 REV__nc|ENSG00000040275|Q96EA4-2|SPDL1 REV__nc|ENSG00000040275|Q96EA4-2|SPDL1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6787719726562 2 524.269478 1046.5244 0.21809 0.00011434 -0.57959 -0.00030386 -0.3615 -0.00018952 524.2691005878003 60.749 0.77125 57.525 57.242 58.013 -3.2237 47 21 3 0 0 0 0.76271 1 11455 11455 10.074 3.3508 1 13608000 + 46954 14047 31233 31253 46194 46194 0.0030024099276033667 TSEKRTEGW 9 Unmodified _TSEKRTEGW_ 0 0 0 REV__ENST00000486135.1_1_2:71356897-71357349:-|nuORF REV__ENST00000486135.1_1_2:71356897-71357349:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7689208984375 2 547.26727 1092.51999 0.56964 0.00031175 -0.44323 -0.00024256 0.12641 6.9181E-05 547.2669792801496 43.05 0.93079 43.05 42.639 43.569 0 52 26 2 0 0 0 0.28819 1 8039 8039 32.305 1.6689 1 30342000 + 46955 22232 31234 31254 46195 46195 -0.022572234301378558 TSEKRTEGW 9 Unmodified _TSEKRTEGW_ 0 0 0 REV__ENST00000486135.1_1_2:71356897-71357349:-|nuORF REV__ENST00000486135.1_1_2:71356897-71357349:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7933349609375 2 547.26727 1092.51999 0.17134 9.3767E-05 0.073134 4.0024E-05 0.24447 0.00013379 547.2672517050387 46.074 0.86757 43.234 42.825 43.693 -2.8409 47 24 2 0 0 0 0.28819 1 8676 8676 32.305 1.6689 1 25558000 + 46956 22232 31234 31254 46196 46196 -0.022572234301378558 TSEMSLSRGL 10 Unmodified _TSEMSLSRGL_ 0 0 0 REV__ENSG00000163354|ENST00000368424|DCST2 REV__ENSG00000163354|ENST00000368424|DCST2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.282958984375 2 540.771331 1079.52811 0.47487 0.0002568 0.64339 0.00034793 1.1183 0.00060473 540.7715781401893 119.52 2.7678 115.05 113.65 116.42 -4.467 207 78 3 0 0 0 0.67319 1 22777 22777 13.906 1.3745 1 19087000 + 46957 17562 31235 31255 46197 46197 -0.008474125050270231 TSENCYSSLSL 11 Unmodified _TSENCYSSLSL_ 0 0 0 REV__ENSG00000131864|ENST00000254181|USP29 REV__ENSG00000131864|ENST00000254181|USP29 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.27880859375 2 602.263536 1202.51252 NaN NaN NaN NaN NaN NaN NaN 117.95 1 113.54 113.04 114.04 -4.4088 0 0 0 0.23324 1 22698 22698 5.7319 0 1 + 46958 16091 31236 31256 46198 46198 -0.08063743812726898 TSENPFKDK 9 Unmodified _TSENPFKDK_ 0 0 0 GNG12|p.T68Nfs*9|1|0.3|ENSG00000172380|chr1:67705467-67705468|-/T|frameshift_variant;GNG12|p.T68Lfs*22|7|0.39|ENSG00000172380|chr1:67705468-67705468|T/-|frameshift_variant;ENSG00000172380|ENST00000370982|GNG12 GNG12|p.T68Nfs*9|1|0.3|ENSG00000172380|chr1:67705467-67705468|-/T|frameshift_variant GNG12|p.T68Nfs*9|1|0.3|ENSG00000172380|chr1:67705467-67705468|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2748413085938 2 533.264196 1064.51384 0.27549 0.00014691 -0.39859 -0.00021256 -0.1231 -6.5646E-05 533.264001601987 40.739 1.1674 40.739 40.173 41.34 0 79 32 4 0 0 0 0.069179 2 7570 7540;7570 41.84 4.8458 1 15087000 46959 6217 31237 31257 46199;46200 46200 -0.015837416616705013 TSENPFKDK 9 Unmodified _TSENPFKDK_ 0 0 0 GNG12|p.T68Nfs*9|1|0.3|ENSG00000172380|chr1:67705467-67705468|-/T|frameshift_variant;GNG12|p.T68Lfs*22|7|0.39|ENSG00000172380|chr1:67705468-67705468|T/-|frameshift_variant;ENSG00000172380|ENST00000370982|GNG12 GNG12|p.T68Nfs*9|1|0.3|ENSG00000172380|chr1:67705467-67705468|-/T|frameshift_variant GNG12|p.T68Nfs*9|1|0.3|ENSG00000172380|chr1:67705467-67705468|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2630004882812 2 533.264196 1064.51384 -0.0022705 -1.2108E-06 0.027735 1.479E-05 0.025465 1.358E-05 533.2641804702288 43.638 0.94849 40.87 40.433 41.381 -2.7683 71 26 3 0 0 0 0.15214 1 8116 8116 43.858 3.901 1 16928000 46960 6217 31237 31257 46201 46201 -0.015837416616705013 TSENPFKDK 9 Unmodified _TSENPFKDK_ 0 0 0 GNG12|p.T68Nfs*9|1|0.3|ENSG00000172380|chr1:67705467-67705468|-/T|frameshift_variant;GNG12|p.T68Lfs*22|7|0.39|ENSG00000172380|chr1:67705468-67705468|T/-|frameshift_variant;ENSG00000172380|ENST00000370982|GNG12 GNG12|p.T68Nfs*9|1|0.3|ENSG00000172380|chr1:67705467-67705468|-/T|frameshift_variant GNG12|p.T68Nfs*9|1|0.3|ENSG00000172380|chr1:67705467-67705468|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2640380859375 2 533.264196 1064.51384 0.33125 0.00017664 -0.26311 -0.0001403 0.068141 3.6337E-05 533.2640072268089 43.578 1.0702 40.812 40.392 41.462 -2.7661 72 29 3 0 0 0 0.11717 1 7855 7855 49.933 0 1 18739000 46961 6217 31237 31257 46202 46202 -0.015837416616705013 TSENPFKDK 9 Unmodified _TSENPFKDK_ 0 0 0 GNG12|p.T68Nfs*9|1|0.3|ENSG00000172380|chr1:67705467-67705468|-/T|frameshift_variant;GNG12|p.T68Lfs*22|7|0.39|ENSG00000172380|chr1:67705468-67705468|T/-|frameshift_variant;ENSG00000172380|ENST00000370982|GNG12 GNG12|p.T68Nfs*9|1|0.3|ENSG00000172380|chr1:67705467-67705468|-/T|frameshift_variant GNG12|p.T68Nfs*9|1|0.3|ENSG00000172380|chr1:67705467-67705468|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.263671875 2 533.264196 1064.51384 0.0087992 4.6923E-06 0.077146 4.1139E-05 0.085946 4.5832E-05 533.2642090971848 43.561 0.97993 40.813 40.381 41.361 -2.7475 72 27 3 0 0 0 0.2219 1 7784 7784 36.127 3.8215 1 13351000 46962 6217 31237 31257 46203 46203 -0.015837416616705013 TSEQNVMDY 9 Unmodified _TSEQNVMDY_ 0 0 0 nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38 nc|nan|Q5JPI3-2|C3orf38 nc|nan|Q5JPI3-2|C3orf38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77880859375 2 543.724046 1085.43354 0.011466 6.2342E-06 0.10964 5.9614E-05 0.12111 6.5848E-05 544.2254932442145 65.226 0.62843 65.226 64.889 65.518 0 26 17 2 0 0 0 0.61228 1 12557 12557 12.241 3.4953 1 2490700 46963 6603 31238 31258 46204 46204 -0.10575971047023813 TSEQNVMDY 9 Unmodified _TSEQNVMDY_ 0 0 0 nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38 nc|nan|Q5JPI3-2|C3orf38 nc|nan|Q5JPI3-2|C3orf38 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7761840820312 2 543.724046 1085.43354 0.15381 8.3628E-05 -0.15464 -8.4083E-05 -0.0008369 -4.5504E-07 543.7240288365756 68.666 0.69405 65.486 65.174 65.868 -3.1796 30 19 2 0 0 0 0.036636 1 13340 13340 78.728 46.423 1 4823600 46964 6603 31238 31258 46205 46205 -0.10575971047023813 TSEQNVMDY 9 Unmodified _TSEQNVMDY_ 0 0 0 nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38 nc|nan|Q5JPI3-2|C3orf38 nc|nan|Q5JPI3-2|C3orf38 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7892456054688 2 543.724046 1085.43354 0.3661 0.00019906 -0.53047 -0.00028843 -0.16438 -8.9375E-05 543.7239304969938 69.05 0.57877 65.514 65.22 65.799 -3.5362 31 15 3 0 0 0 0.09885 1 13015 13015 56.177 23.872 1 3801200 46965 6603 31238 31258 46206 46206 -0.10575971047023813 TSEQPIAAL 9 Unmodified _TSEQPIAAL_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2504577636719 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 129.2 1 124.57 124.07 125.07 -4.6292 0 0 0 0.21065 1 25468 25468 20.454 3.5113 1 46966 1158 31239 31259 46207 46207 0.01945774797957256 TSERLVTI 8 Unmodified _TSERLVTI_ 0 0 0 ENSG00000204624|ENST00000294484|DISP3;nc|ENSG00000204624|Q9P2K9-2|DISP3 ENSG00000204624|ENST00000294484|DISP3 ENSG00000204624|ENST00000294484|DISP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2408752441406 2 459.766374 917.518196 0.70983 0.00032636 -0.68245 -0.00031377 0.027379 1.2588E-05 459.7659350263309 28.283 0.34348 26.327 26.158 26.502 -1.9561 15 9 2 0 0 0 0.86208 1 5031 5031 0.68139 0 1 352530 46967 7598 31240 31260 46208 46208 0.056137675519039476 TSERTVLRY 9 Unmodified _TSERTVLRY_ 0 0 0 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2077941894531 3 375.540134 1123.59857 0.1125 4.2248E-05 -0.25529 -9.5873E-05 -0.1428 -5.3626E-05 375.54008578534894 44.12 1.5207 44.12 43.712 45.233 0 154 43 7 0 0 0 0.059185 1 8250 8250 79.427 16.2 1 159030000 46968 828 31241 31261 46209 46209 0.04171628874951239 TSERTVLRY 9 Unmodified _TSERTVLRY_ 0 0 0 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.8602294921875 3 375.540134 1123.59857 NaN NaN NaN NaN NaN NaN NaN 48.605 1 45.736 45.236 46.236 -2.869 0 0 0 0.16777 1 9195 9195 22.736 22.707 1 46969 828 31241 31261 46210 46210 0.04171628874951239 TSERTVLRY 9 Unmodified _TSERTVLRY_ 0 0 0 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21136474609375 3 375.540134 1123.59857 -0.30631 -0.00011503 0.33438 0.00012557 0.028064 1.0539E-05 375.5402363280127 47.935 0.5028 45.066 44.842 45.345 -2.869 25 13 3 0 0 0 0.74911 1 9021 9021 19.626 7.4512 1 1180200 46970 828 31241 31261 46211 46211 0.04171628874951239 TSERTVLRY 9 Unmodified _TSERTVLRY_ 0 0 0 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.20428466796875 3 375.540134 1123.59857 -0.28302 -0.00010628 0.10375 3.8962E-05 -0.17927 -6.7323E-05 375.54022087630426 47.103 1.1055 44.262 43.798 44.904 -2.8409 142 31 6 0 0 0 0.059185 1 8904 8904 88.364 33.129 1 217630000 46971 828 31241 31261 46212 46212 0.04171628874951239 TSERTVLRY 9 Unmodified _TSERTVLRY_ 0 0 0 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21319580078125 3 375.540134 1123.59857 0.002287 8.5888E-07 -0.28679 -0.0001077 -0.2845 -0.00010684 375.5400734041273 47.195 1.1824 44.253 43.754 44.937 -2.9421 137 33 6 0 0 0 0.5428 1 8511 8511 4.897 2.3985 1 207900000 46972 828 31241 31261 46213 46213 0.04171628874951239 TSERTVLRY 9 Unmodified _TSERTVLRY_ 0 0 0 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2181701660156 3 375.540134 1123.59857 0.012975 4.8726E-06 0.12797 4.8057E-05 0.14094 5.293E-05 375.5401465236963 48.091 0.31514 45.149 44.937 45.252 -2.9421 14 8 2 0 0 0 0.42092 1 8750 8750 43.982 16.759 1 836630 46973 828 31241 31261 46214 46214 0.04171628874951239 TSERTVLRY 9 Unmodified _TSERTVLRY_ 0 0 0 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16 DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20440673828125 3 375.540134 1123.59857 -0.77921 -0.00029263 0.52027 0.00019538 -0.25894 -9.7241E-05 375.54038150455307 47.142 1.59 44.192 43.705 45.295 -2.9499 159 45 6 0 0 0 0.026773 1 8617 8617 92.201 36.966 1 183270000 46974 828 31241 31261 46215 46215 0.04171628874951239 TSERWTGKE 9 Unmodified _TSERWTGKE_ 0 0 0 REV__SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant REV__SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7688598632812 2 547.26727 1092.51999 0.56964 0.00031175 -0.44323 -0.00024256 0.12641 6.9181E-05 547.2669792801496 43.05 0.93079 43.05 42.639 43.569 0 52 26 2 0 0 0 0.1793 3 8087 8029;8087;8126 39.957 0 1 30342000 + 46975 15069 31242 31262 46216;46217;46218 46217 -0.022572234301378558 TSERWTGKE 9 Unmodified _TSERWTGKE_ 0 0 0 REV__SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant REV__SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7688598632812 2 547.26727 1092.51999 0.17134 9.3767E-05 0.073134 4.0024E-05 0.24447 0.00013379 547.2672517050387 46.074 0.86757 43.234 42.825 43.693 -2.8409 47 24 2 0 0 0 0.1793 1 8649 8649 39.957 0 1 25558000 + 46976 15069 31242 31262 46219 46219 -0.022572234301378558 TSERWTGKE 9 Unmodified _TSERWTGKE_ 0 0 0 REV__SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant REV__SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7706298828125 2 547.26727 1092.51999 0.011935 6.5314E-06 0.15776 8.6335E-05 0.16969 9.2867E-05 547.2673030759396 46.1 0.93012 43.234 42.796 43.726 -2.8653 50 26 2 0 0 0 0.28819 2 8317 8317;8408 32.305 0 1 26864000 + 46977 15069 31242 31262 46220;46221 46220 -0.022572234301378558 TSERWTGKE 9 Unmodified _TSERWTGKE_ 0 0 0 REV__SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant REV__SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7902221679688 2 547.26727 1092.51999 -0.024287 -1.3291E-05 0.20233 0.00011073 0.17805 9.7438E-05 547.2673313557348 46.125 1.0059 43.259 42.783 43.789 -2.8666 52 28 2 0 0 0 0.28819 3 8333 8314;8333;8413 32.305 0 1 21031000 + 46978 15069 31242 31262 46222;46223;46224 46223 -0.022572234301378558 TSESEIRPY 9 Unmodified _TSESEIRPY_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-4|SMG1 REV__nc|ENSG00000157106|Q96Q15-4|SMG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2621459960938 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 53.953 1 53.953 53.453 54.453 0 0 0 0 0.22519 1 10283 10283 16.149 0.30192 1 + 46979 17282 31243 31263 46225 46225 -0.028280455243020697 TSESEIRPY 9 Unmodified _TSESEIRPY_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-4|SMG1 REV__nc|ENSG00000157106|Q96Q15-4|SMG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2625122070312 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 57.709 1 54.458 53.958 54.958 -3.2517 0 0 0 0.23508 1 10717 10717 13.042 1.4022 1 + 46980 17282 31243 31263 46226 46226 -0.028280455243020697 TSESEIRPY 9 Unmodified _TSESEIRPY_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-4|SMG1 REV__nc|ENSG00000157106|Q96Q15-4|SMG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.263916015625 2 541.261653 1080.50875 0.13655 7.3911E-05 1.1169 0.00060456 1.2535 0.00067847 541.2625147130084 57.552 0.71692 54.347 53.829 54.546 -3.2052 28 19 2 0 0 0 0.55539 1 10711 10711 16.149 4.6544 1 763420 + 46981 17282 31243 31263 46227 46227 -0.028280455243020697 TSETFLVGNV 10 Unmodified _TSETFLVGNV_ 0 0 0 ENST00000392582.2_1_2:172930337-172937166:+|nuORF;ENSG00000172878|ENST00000315796|METAP1D ENST00000392582.2_1_2:172930337-172937166:+|nuORF ENST00000392582.2_1_2:172930337-172937166:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2611694335938 2 533.774396 1065.53424 0.5016 0.00026774 -0.50721 -0.00027074 -0.0056175 -2.9985E-06 533.7741334556222 80.436 0.83784 80.436 80.002 80.84 0 67 23 4 0 0 0 0.59264 1 15601 15601 29.082 2.1979 1 17705000 46982 6248 31244 31264 46228 46228 0.004094289981594557 TSEWFAIPFFY 11 Unmodified _TSEWFAIPFFY_ 0 0 0 REV__ENST00000437099.6_1_17:9819894-9820095:-|nuORF REV__ENST00000437099.6_1_17:9819894-9820095:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 704.3082885742188 2 704.334621 1406.65469 NaN NaN NaN NaN NaN NaN NaN 170.59 1 165.8 165.3 166.3 -4.7898 0 0 0 0.22632 1 34631 34631 3.0723 0 1 + 46983 21675 31245 31265 46229 46229 -0.032371630082479896 TSEYIIQAY 9 Unmodified _TSEYIIQAY_ 0 0 0 NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25;NAA25|p.V720Gfs*6|1|0.14|ENSG00000111300|chr12:112043716-112043717|-/C|frameshift_variant;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7764892578125 2 544.268947 1086.52334 0.32311 0.00017586 -1.0182 -0.00055418 -0.69511 -0.00037833 544.2681929362979 116.27 0.55943 116.27 116.08 116.64 0 22 15 2 0 0 0 0.71527 1 22910 22910 13.906 0 1 1873400 46984 2614 31246 31266 46230 46230 -0.01645973376139409 TSEYIIQAY 9 Unmodified _TSEYIIQAY_ 0 0 0 NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25;NAA25|p.V720Gfs*6|1|0.14|ENSG00000111300|chr12:112043716-112043717|-/C|frameshift_variant;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7882080078125 2 544.268947 1086.52334 0.46034 0.00025055 -0.17547 -9.5503E-05 0.28487 0.00015505 544.2687223168707 121.37 0.6773 116.82 116.49 117.17 -4.5476 33 18 2 0 0 0 0.32967 1 23914 23914 22.621 22.493 1 3491200 46985 2614 31246 31266 46231 46231 -0.01645973376139409 TSEYIIQAY 9 Unmodified _TSEYIIQAY_ 0 0 0 NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25;NAA25|p.V720Gfs*6|1|0.14|ENSG00000111300|chr12:112043716-112043717|-/C|frameshift_variant;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7884521484375 2 544.268947 1086.52334 0.60205 0.00032768 -0.4386 -0.00023872 0.16345 8.896E-05 544.2685922774255 121.4 0.85372 116.71 116.24 117.09 -4.6873 36 23 2 0 0 0 0.13686 1 23318 23318 61.357 13.012 1 2484900 46986 2614 31246 31266 46232 46232 -0.01645973376139409 TSEYIIQAY 9 Unmodified _TSEYIIQAY_ 0 0 0 NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25;NAA25|p.V720Gfs*6|1|0.14|ENSG00000111300|chr12:112043716-112043717|-/C|frameshift_variant;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7759399414062 2 544.268947 1086.52334 0.42608 0.0002319 -0.29024 -0.00015797 0.13584 7.3934E-05 544.2687569539701 121.18 0.79266 116.65 116.28 117.08 -4.5305 32 21 2 0 0 0 0.58699 1 23314 23314 19.257 9.8739 1 1811800 46987 2614 31246 31266 46233 46233 -0.01645973376139409 TSFFFHGS 8 Unmodified _TSFFFHGS_ 0 0 0 REV__ENST00000368715.5_1_1:153516097-153516238:-|nuORF REV__ENST00000368715.5_1_1:153516097-153516238:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2505798339844 2 465.211235 928.407917 -0.065354 -3.0404E-05 0.22355 0.000104 0.15819 7.3594E-05 465.2114022234101 107.2 0.20397 102.78 102.68 102.89 -4.4121 7 5 2 0 0 0 0.89147 1 20584 20584 0.12286 0 1 323680 + 46988 20949 31247 31267 46234 46234 -0.05915032716472979 TSFFLYKS 8 Unmodified _TSFFLYKS_ 0 0 0 ENST00000283629.7_1_3:33430534-33430735:-|nuORF ENST00000283629.7_1_3:33430534-33430735:-|nuORF ENST00000283629.7_1_3:33430534-33430735:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 330.99176025390625 3 331.507771 991.501483 -0.30239 -0.00010024 -0.23447 -7.773E-05 -0.53686 -0.00017797 331.50770872082387 19.554 1.2286 18.228 17.469 18.698 -1.3251 114 34 4 0 0 0 1.0252 1 2947 2947 3.2813 0 1 24460000 46989 8449 31248 31268 46235 46235 0.005392666659417955 TSFFLYKS 8 Unmodified _TSFFLYKS_ 0 0 0 ENST00000283629.7_1_3:33430534-33430735:-|nuORF ENST00000283629.7_1_3:33430534-33430735:-|nuORF ENST00000283629.7_1_3:33430534-33430735:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 331.041015625 3 331.507771 991.501483 -1.6374 -0.0005428 1.0543 0.00034951 -0.58306 -0.00019329 331.5081674904349 19.946 1.3859 18.31 17.395 18.781 -1.6351 122 39 5 0 0 0 1.0252 1 2974 2974 3.2813 3.2813 1 19272000 46990 8449 31248 31268 46236 46236 0.005392666659417955 TSFGEYGGW 9 Unmodified _TSFGEYGGW_ 0 0 0 nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;KLC1|p.N469Tfs*18|1|0.15|ENSG00000126214|chr14:103677436-103677436|A/-|frameshift_variant;nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-6|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.14593505859375 3 335.14338 1002.40831 -0.30941 -0.0001037 0.28769 9.6419E-05 -0.021716 -7.2779E-06 335.1434489991195 51.731 2.2258 51.731 51.022 53.248 0 216 62 4 0 0 0 0.46598 1 9740 9740 0.073264 0.064987 1 100320000 46991 3417 31249 31269 46237 46237 -0.09279657787271844 TSFGKNKKA 9 Unmodified _TSFGKNKKA_ 0 0 0 APPL2|p.K407Nfs*11|1|0.39|ENSG00000136044|chr12:105195281-105195281|T/-|frameshift_variant APPL2|p.K407Nfs*11|1|0.39|ENSG00000136044|chr12:105195281-105195281|T/-|frameshift_variant APPL2|p.K407Nfs*11|1|0.39|ENSG00000136044|chr12:105195281-105195281|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2524108886719 2 490.779816 979.545079 1.1257 0.00055247 -0.83249 -0.00040857 0.29322 0.00014391 490.77914154005623 26.861 0.40995 25.079 24.828 25.238 -1.7821 17 11 2 0 0 0 0.84208 1 4711 4711 11.64 2.2929 1 777890 46992 189 31250 31270 46238 46238 0.05448876163075056 TSFKKKIKV 9 Unmodified _TSFKKKIKV_ 0 0 0 REV__tr|U7SX92|U7SX92_FUSNUSuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00915PE=4SV=1 REV__tr|U7SX92|U7SX92_FUSNUSuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00915PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20166015625 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 89.58 1 85.802 85.302 86.302 -3.7779 0 0 0 0.23508 1 17147 17147 0.86438 0.46366 1 + 46993 25214 31251 31271 46239 46239 0.15527758679127146 TSFRGQPQ 8 Unmodified _TSFRGQPQ_ 0 0 0 REV__KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant REV__KPRP|p.P340Hfs*31|1|0.22|ENSG00000203786|chr1:152760603-152760603|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22662353515625 2 460.732866 919.451179 -0.04189 -1.93E-05 -0.91923 -0.00042352 -0.96112 -0.00044282 460.73241681381535 61.63 0.4957 58.669 58.479 58.974 -2.9614 19 13 2 0 0 0 0.9455 1 11855 11855 7.2892 0 1 1891000 + 46994 19499 31252 31272 46240 46240 -0.011768429391850077 TSFSDMICLY 10 Unmodified _TSFSDMICLY_ 0 0 0 REV__ENSG00000177669|ENST00000320542|MBOAT4 REV__ENSG00000177669|ENST00000320542|MBOAT4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2606811523438 2 590.256668 1178.49878 NaN NaN NaN NaN NaN NaN NaN 58.157 1 54.905 54.405 55.405 -3.2517 0 0 0 0.22526 1 10802 10802 21.747 6.9084 1 + 46995 18569 31253 31273 46241 46241 -0.08332692845533529 TSFTYTESF 9 Unmodified _TSFTYTESF_ 0 0 0 REV__FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant REV__FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2841796875 2 541.73748 1081.46041 0.3336 0.00018072 -3.1587 -0.0017112 -2.8251 -0.0015304 542.2374508560273 138.51 0.46065 133.67 133.51 133.97 -4.84 20 12 2 0 0 0 0.79204 1 26747 26747 7.2892 6.6877 1 5633400 + 46996 14330 31254 31274 46242 46242 -0.07706539164178139 TSFVPTWSYKS 11 Unmodified _TSFVPTWSYKS_ 0 0 0 REV__ENST00000395292.6_2_11:47498928-47504295:-|nuORF REV__ENST00000395292.6_2_11:47498928-47504295:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 434.8919982910156 3 434.883677 1301.6292 NaN NaN NaN NaN NaN NaN NaN 51.244 1 48.361 47.861 48.861 -2.8824 0 0 0 0.23698 1 9736 9736 2.6312 0.72486 1 + 46997 21260 31255 31275 46243 46243 -0.009546375306626942 TSFVVTVRDK 10 Unmodified _TSFVVTVRDK_ 0 0 0 REV__ENSG00000163466|ENST00000315717|ARPC2 REV__ENSG00000163466|ENST00000315717|ARPC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.322021484375 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 120.21 1 115.74 115.24 116.24 -4.467 0 0 0 2.8426 1 23143 23143 0.013265 0.012701 1 + 46998 17573 31256 31276 46244 46244 0.06533086051786086 TSFWTSSY 8 Unmodified _TSFWTSSY_ 0 0 0 VGLL3|p.A202Cfs*4|1|0.11|ENSG00000206538|chr3:86968924-86968925|-/G|frameshift_variant;nc|ENSG00000206538|A8MV65-2|VGLL3;ENSG00000206538|ENST00000398399|VGLL3 VGLL3|p.A202Cfs*4|1|0.11|ENSG00000206538|chr3:86968924-86968925|-/G|frameshift_variant VGLL3|p.A202Cfs*4|1|0.11|ENSG00000206538|chr3:86968924-86968925|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25927734375 2 489.713808 977.413062 0.03325 1.6283E-05 -0.68046 -0.00033323 -0.64721 -0.00031695 489.71350562539277 23.089 0.59141 21.636 21.296 21.888 -1.4535 22 16 2 0 0 0 1.0147 1 3755 3755 9.3474 0 1 693920 46999 7672 31257 31277 46245 46245 -0.07654773644526358 TSGAHITGY 9 Unmodified _TSGAHITGY_ 0 0 0 REV__ENST00000454993.6_1_19:42503025-42546997:-|nuORF REV__ENST00000454993.6_1_19:42503025-42546997:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7513427734375 2 453.719424 905.424296 0.39829 0.00018071 0.8137 0.00036919 1.212 0.00054991 453.7199606653198 51.122 1.3101 51.122 50.13 51.441 0 68 37 3 0 0 0 0.44262 1 9574 9574 23.148 2.6948 1 8043600 + 47000 15014 31258 31278 46246 46246 -0.03219951550397582 TSGASSHHQHC 11 Unmodified _TSGASSHHQHC_ 0 0 0 SPATA31A1|p.H1335Q|1|0.38|ENSG00000204849|chr9:39361770-39361770|C/A|missense_variant SPATA31A1|p.H1335Q|1|0.38|ENSG00000204849|chr9:39361770-39361770|C/A|missense_variant SPATA31A1|p.H1335Q|1|0.38|ENSG00000204849|chr9:39361770-39361770|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3153076171875 2 576.235978 1150.4574 NaN NaN NaN NaN NaN NaN NaN 33.12 1 33.12 32.62 33.62 0 0 0 0 0.23018 1 6038 6038 8.1555 0.24537 1 47001 25777 31259 31279 46247 46247 -0.11180692769971756 TSGDGGVE 8 Unmodified _TSGDGGVE_ 0 0 0 ENST00000406875.7_1_7:139255655-139255937:-|nuORF ENST00000406875.7_1_7:139255655-139255937:-|nuORF ENST00000406875.7_1_7:139255655-139255937:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.8638000488281 2 361.153583 720.292613 NaN NaN NaN NaN NaN NaN NaN 65.231 1 62.184 61.684 62.684 -3.047 0 0 0 0.2343 1 12622 12622 0.62683 0 1 47002 9547 31260 31280 46248 46248 -0.07872181638140319 TSGDVRVW 8 Unmodified _TSGDVRVW_ 0 0 0 ENSG00000174989|ENST00000652555|FBXW8;nc|ENSG00000174989|Q8N3Y1-2|FBXW8;FBXW8|p.R238H|1|0.48|ENSG00000174989|chr12:116964732-116964732|G/A|missense_variant ENSG00000174989|ENST00000652555|FBXW8 ENSG00000174989|ENST00000652555|FBXW8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2351989746094 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 118.46 1 118.46 117.96 118.96 0 0 0 0 0.22699 1 23335 23335 0.62683 0.50396 1 47003 6379 31261 31281 46249 46249 -0.006559587964261482 TSGDVRVW 8 Unmodified _TSGDVRVW_ 0 0 0 ENSG00000174989|ENST00000652555|FBXW8;nc|ENSG00000174989|Q8N3Y1-2|FBXW8;FBXW8|p.R238H|1|0.48|ENSG00000174989|chr12:116964732-116964732|G/A|missense_variant ENSG00000174989|ENST00000652555|FBXW8 ENSG00000174989|ENST00000652555|FBXW8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.235107421875 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 118.7 1 118.7 118.2 119.2 0 0 0 0 0.23182 1 23380 23380 0.62683 0 1 47004 6379 31261 31281 46250 46250 -0.006559587964261482 TSGEVLLSSA 10 Unmodified _TSGEVLLSSA_ 0 0 0 REV__nc|ENSG00000162775|Q96T37-4|RBM15 REV__nc|ENSG00000162775|Q96T37-4|RBM15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78900146484375 2 482.253297 962.492041 -0.0073952 -3.5664E-06 0.12774 6.1605E-05 0.12035 5.8039E-05 482.25322775301265 44.076 0.62169 41.285 40.947 41.569 -2.79 31 17 2 0 0 0 0.29449 1 8274 8274 31.268 0 1 1880600 + 47005 17528 31262 31282 46251 46251 0.009294535897765854 TSGGAGHY 8 Unmodified _TSGGAGHY_ 0 0 0 nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1 nc|ENSG00000172175|Q9UDY8-2|MALT1 nc|ENSG00000172175|Q9UDY8-2|MALT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21246337890625 2 375.164285 748.314017 NaN NaN NaN NaN NaN NaN NaN 36.62 1 34.151 33.651 34.651 -2.4688 0 0 0 0.2396 1 6764 6764 0 0 1 47006 6197 31263 31283 46252 46252 -0.07020751818765802 TSGGAGHY 8 Unmodified _TSGGAGHY_ 0 0 0 nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1 nc|ENSG00000172175|Q9UDY8-2|MALT1 nc|ENSG00000172175|Q9UDY8-2|MALT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2096862792969 2 375.164285 748.314017 NaN NaN NaN NaN NaN NaN NaN 36.599 1 34.251 33.751 34.751 -2.3479 0 0 0 0.2396 1 6473 6473 0 0 1 47007 6197 31263 31283 46253 46253 -0.07020751818765802 TSGGAGHY 8 Unmodified _TSGGAGHY_ 0 0 0 nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1 nc|ENSG00000172175|Q9UDY8-2|MALT1 nc|ENSG00000172175|Q9UDY8-2|MALT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2139587402344 2 375.164285 748.314017 NaN NaN NaN NaN NaN NaN NaN 47.014 1 44.072 43.572 44.572 -2.9421 0 0 0 0.22834 1 8559 8559 0.12286 0 1 47008 6197 31263 31283 46254 46254 -0.07020751818765802 TSGGIFETKF 10 Unmodified _TSGGIFETKF_ 0 0 0 REV__ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant REV__ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7791748046875 2 543.776939 1085.53933 0.68206 0.00037089 3.0965 0.0016838 3.7786 0.0020547 544.2795955847763 103.72 0.31602 103.72 103.47 103.79 0 9 8 2 0 0 0 0.39316 1 20383 20383 31.268 8.1199 1 1138900 + 47009 13145 31264 31284 46255 46255 -2.2671392343909247E-05 TSGGSLVINAF 11 Unmodified _TSGGSLVINAF_ 0 0 0 REV__ENSG00000115073|ENST00000289228|ACTR1B REV__ENSG00000115073|ENST00000289228|ACTR1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2849731445312 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 71.966 1 71.966 71.466 72.466 0 0 0 0 0.20718 1 13947 13947 17.113 0.1706 1 + 47010 15400 31265 31285 46256 46256 0.02053135235018999 TSGGTFIGIGR 11 Unmodified _TSGGTFIGIGR_ 0 0 0 TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant;nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;TRPS1|p.N1276Kfs*5|1|0.21|ENSG00000104447|chr8:115414041-115414042|-/T|frameshift_variant;ENSG00000104447|ENST00000395715|TRPS1 TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2869873046875 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 72.309 1 72.309 71.809 72.809 0 0 0 0 0.11991 1 14018 14018 32.786 11.249 1 47011 2238 31266 31286 46257 46257 0.03175957329199264 TSGGTFIGIGR 11 Unmodified _TSGGTFIGIGR_ 0 0 0 TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant;nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;TRPS1|p.N1276Kfs*5|1|0.21|ENSG00000104447|chr8:115414041-115414042|-/T|frameshift_variant;ENSG00000104447|ENST00000395715|TRPS1 TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2869873046875 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 76.308 1 72.585 72.085 73.085 -3.7227 0 0 0 0.16232 1 14444 14444 26.268 4.7312 1 47012 2238 31266 31286 46258 46258 0.03175957329199264 TSGLLEAPE 9 Unmodified _TSGLLEAPE_ 0 0 0 REV__ENST00000441363.1_1_6:73973084-74008823:+|nuORF REV__ENST00000441363.1_1_6:73973084-74008823:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386474609375 2 458.73474 915.454927 0.65035 0.00029834 1.9057 0.00087419 2.556 0.0011725 458.73449616385494 78.758 1.4322 78.758 77.979 79.411 0 59 40 3 0 0 0 0.36034 1 15259 15259 43.858 16.975 1 3615900 + 47013 21711 31267 31287 46259 46259 -0.006182179560028089 TSGLLEAPE 9 Unmodified _TSGLLEAPE_ 0 0 0 REV__ENST00000441363.1_1_6:73973084-74008823:+|nuORF REV__ENST00000441363.1_1_6:73973084-74008823:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2384948730469 2 458.73474 915.454927 0.024803 1.1378E-05 0.072929 3.3455E-05 0.097732 4.4833E-05 458.73476983894585 82.517 1.267 78.643 78.095 79.362 -3.8736 50 36 2 0 0 0 0.12295 1 15679 15679 37.974 0 1 3011500 + 47014 21711 31267 31287 46260 46260 -0.006182179560028089 TSGLMESEDL 10 Unmodified _TSGLMESEDL_ 0 0 0 REV__ENSG00000089116|ENST00000261731|LHX5 REV__ENSG00000089116|ENST00000261731|LHX5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2833251953125 2 541.239529 1080.46451 NaN NaN NaN NaN NaN NaN NaN 130.35 1 125.51 125.01 126.01 -4.8355 0 0 0 0.22588 1 25027 25027 5.7319 0 1 + 47015 14522 31268 31288 46261 46261 -0.07250817732779069 TSGNAATK 8 Unmodified _TSGNAATK_ 0 0 0 ENSG00000090060|ENST00000216277|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2128601074219 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 66.066 1 62.608 62.108 63.108 -3.4581 0 0 0 0.23899 1 12374 12374 1.3295 0 1 47016 1777 31269 31289 46262 46262 -0.012719096131945662 TSGQQSAVIA 10 Unmodified _TSGQQSAVIA_ 0 0 0 REV__ENSG00000180357|ENST00000326648|ZNF609 REV__ENSG00000180357|ENST00000326648|ZNF609 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25152587890625 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 54.637 1 54.637 54.137 55.137 0 0 0 0 0.1839 1 10421 10421 31.268 3.6395 1 + 47017 18684 31270 31290 46263 46263 0.005799891668630153 TSGRLAEW 8 Unmodified _TSGRLAEW_ 0 0 0 ENST00000376592.5_2_1:11848712-11848931:-|nuORF ENST00000376592.5_2_1:11848712-11848931:-|nuORF ENST00000376592.5_2_1:11848712-11848931:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.234375 2 460.235242 918.45593 0.53053 0.00024417 -0.39333 -0.00018102 0.13721 6.3147E-05 460.2351061317001 45.421 0.52593 45.421 45.165 45.691 0 30 14 3 0 0 0 0.66265 1 8522 8522 18.135 2.2878 1 1302900 47018 9254 31271 31291 46264 46264 -0.006559587964375169 TSGRLAEW 8 Unmodified _TSGRLAEW_ 0 0 0 ENST00000376592.5_2_1:11848712-11848931:-|nuORF ENST00000376592.5_2_1:11848712-11848931:-|nuORF ENST00000376592.5_2_1:11848712-11848931:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.235242 918.45593 -0.032833 -1.5111E-05 0.42719 0.00019661 0.39436 0.0001815 460.23549934898404 48.476 0.49075 45.49 45.172 45.663 -2.9861 0.026842 0.00014505 NaN 18.135 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1073700 47019 9254 31271 31291 -0.006559587964375169 TSGSAGTIYSV 11 Unmodified _TSGSAGTIYSV_ 0 0 0 REV__nc|ENSG00000243708|P0C869-4|PLA2G4B REV__nc|ENSG00000243708|P0C869-4|PLA2G4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26611328125 2 521.756204 1041.49785 0.45331 0.00023652 -2.5037 -0.0013063 -2.0504 -0.0010698 521.7550451895137 99.43 0.52555 99.43 99.127 99.653 0 21 13 2 0 0 0 0.6353 1 19524 19524 16.149 5.3252 1 1738300 + 47020 19802 31272 31292 46265 46265 -0.021234478985661553 TSGSYWDY 8 Unmodified _TSGSYWDY_ 0 0 0 CFHR4|p.S63del|1|0.23|ENSG00000134365|chr1:196902547-196902549|CTT/-|inframe_deletion CFHR4|p.S63del|1|0.23|ENSG00000134365|chr1:196902547-196902549|CTT/-|inframe_deletion CFHR4|p.S63del|1|0.23|ENSG00000134365|chr1:196902547-196902549|CTT/-|inframe_deletion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.259033203125 2 489.695615 977.376677 -0.28452 -0.00013933 0.87473 0.00042835 0.59021 0.00028902 489.6960424537702 26.089 0.4505 24.167 23.849 24.299 -1.9222 21 12 2 0 0 0 1.0147 1 4307 4307 5.2307 5.2307 1 592130 47021 507 31273 31293 46266 46266 -0.11291650541238596 TSGVDVLSDPP 11 Unmodified _TSGVDVLSDPP_ 0 0 0 REV__DESI1|p.V71L|1|0.34|ENSG00000100418|chr22:41604123-41604123|C/A|missense_variant REV__DESI1|p.V71L|1|0.34|ENSG00000100418|chr22:41604123-41604123|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7704467773438 2 543.769311 1085.52407 0.14353 7.8045E-05 1.2429 0.00067583 1.3864 0.00075388 543.7699900254216 26.679 1.1695 24.757 24.02 25.19 -1.9222 58 32 2 0 0 0 0.6353 1 4513 4513 16.149 0.90062 1 1279400 + 47022 13669 31274 31294 46267 46267 -0.015271787270876303 TSGVRMRLY 9 Unmodified _TSGVRMRLY_ 0 0 0 REV__ENST00000377452.3_1_20:18576672-18576717:+|nuORF REV__ENST00000377452.3_1_20:18576672-18576717:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2738647460938 2 541.792401 1081.57025 0.39714 0.00021517 0.22126 0.00011988 0.6184 0.00033504 541.7913363440545 66.195 0.10378 62.912 62.824 62.928 -3.2832 4 2 2 0 0 0 0.84208 1 12456 12456 11.64 1.4569 1 430140 + 47023 21097 31275 31295 46268 46268 0.03272607694043472 TSGVRPGCP 9 Unmodified _TSGVRPGCP_ 0 0 0 CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant;nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5 CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2159423828125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 100.06 1 100.06 99.56 100.56 0 0 0 0 0.23508 1 19628 19628 7.2892 1.5288 1 47024 604 31276 31296 46269 46269 -0.023875877025943737 TSGYANDYPP 10 Unmodified _TSGYANDYPP_ 0 0 0 nc|ENSG00000170374|Q8TDD2-2|SP7;ENSG00000170374|ENST00000536324|SP7 nc|ENSG00000170374|Q8TDD2-2|SP7 nc|ENSG00000170374|Q8TDD2-2|SP7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7710571289062 2 542.732729 1083.4509 0.22068 0.00011977 0.16372 8.8854E-05 0.38439 0.00020862 542.7325703819457 77.479 1.1594 74.016 73.341 74.5 -3.4633 72 32 3 0 0 0 0.65512 1 15101 15101 18.146 3.3081 1 8162400 47025 6064 31277 31297 46270 46270 -0.08748307449718595 TSGYIEKQVHF 11 Unmodified _TSGYIEKQVHF_ 0 0 0 REV__TRAPPC9|p.Q563Hfs*5|1|0.04|ENSG00000167632|chr8:140300548-140300549|-/ATGCATGTGCA|frameshift_variant REV__TRAPPC9|p.Q563Hfs*5|1|0.04|ENSG00000167632|chr8:140300548-140300549|-/ATGCATGTGCA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23602294921875 3 436.890944 1307.651 NaN NaN NaN NaN NaN NaN NaN 26.869 1 25.234 24.734 25.734 -1.6347 0 0 0 0.23689 1 4470 4470 2.8433 0 1 + 47026 17947 31278 31298 46271 46271 0.009481672178935696 TSHPPHHC 8 Unmodified _TSHPPHHC_ 0 0 0 ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2;ENST00000459976.2_1_3:49002373-49005591:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF ENST00000452385.5_1_3:48982572-49020700:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22454833984375 2 458.198136 914.381719 -0.57509 -0.0002635 0.088323 4.0469E-05 -0.48676 -0.00022303 458.1981472122927 108.84 0.73383 104.46 104.15 104.89 -4.3776 44 20 3 0 0 0 8448 1 21534 21534 0.30703 0.30703 1 1573500 47027 6515 31279 31299 46272 46272 -0.07889625159600655 TSHRQQFY 8 Unmodified _TSHRQQFY_ 0 0 0 ENSG00000141431|ENST00000269197|ASXL3;ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant ENSG00000141431|ENST00000269197|ASXL3 ENSG00000141431|ENST00000269197|ASXL3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27783203125 2 533.756872 1065.49919 0.55318 0.00029526 -1.2478 -0.00066604 -0.69466 -0.00037078 533.7560785270963 31.518 0.87477 29.37 28.813 29.688 -2.1483 41 24 2 0 0 0 0.66066 1 5369 5369 28.487 2.2187 1 927290 47028 4362 31280 31300 46273 46273 -0.030937690191422007 TSHTQNQY 8 Unmodified _TSHTQNQY_ 0 0 0 SCAF4|p.E653Qfs*24|1|0.4|ENSG00000156304|chr21:31688393-31688394|-/TG|frameshift_variant SCAF4|p.E653Qfs*24|1|0.4|ENSG00000156304|chr21:31688393-31688394|-/TG|frameshift_variant SCAF4|p.E653Qfs*24|1|0.4|ENSG00000156304|chr21:31688393-31688394|-/TG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2633056640625 2 489.717413 977.420273 0.22953 0.00011241 -0.4878 -0.00023889 -0.25827 -0.00012648 489.71724741252297 28.982 0.49087 28.982 28.704 29.195 0 18 13 2 0 0 0 1.0095 1 5205 5205 0.69038 0 1 1222300 47029 25637 31281 31301 46274 46274 -0.06934041044098649 TSIAFLFY 8 Unmodified _TSIAFLFY_ 0 0 0 ENST00000451311.6_1_X:12994929-12994995:+|nuORF ENST00000451311.6_1_X:12994929-12994995:+|nuORF ENST00000451311.6_1_X:12994929-12994995:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25506591796875 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 56.049 1 52.859 52.359 53.359 -3.1895 0 0 0 0.21486 1 10377 10377 10.183 0 1 47030 9976 31282 31302 46275 46275 0.013841681542771767 TSIASPWGT 9 Unmodified _TSIASPWGT_ 0 0 0 ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2305603027344 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 22.099 1 22.099 21.599 22.599 0 0 0 0 0.21469 1 3725 3725 19.257 1.122 1 47031 163 31283 31303 46276 46276 -0.01778780890560938 TSIASPWGT 9 Unmodified _TSIASPWGT_ 0 0 0 ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2308044433594 2 460.229625 918.444697 0.7632 0.00035125 1.1341 0.00052193 1.8973 0.00087318 460.2310477008135 23.596 0.34733 22.043 21.904 22.252 -1.5532 14 9 2 0 0 0 0.55979 1 4057 4057 15.847 0.5987 1 322880 47032 163 31283 31303 46277 46277 -0.01778780890560938 TSIEGTYVG 9 Unmodified _TSIEGTYVG_ 0 0 0 REV__PCDHA7|p.L626V|1|0.32|ENSG00000204963|chr5:140836259-140836259|C/G|missense_variant REV__PCDHA7|p.L626V|1|0.32|ENSG00000204963|chr5:140836259-140836259|C/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24591064453125 2 463.726915 925.439277 0.67145 0.00031137 -0.82414 -0.00038218 -0.15269 -7.0809E-05 463.7264843215548 103.81 2.1902 99.755 99.278 101.47 -4.0543 156 61 4 0 0 0 0.11968 1 19929 19929 4.7159 0 1 96519000 + 47033 24443 31284 31304 46278 46278 -0.026425044730444824 TSIEPGYY 8 Unmodified _TSIEPGYY_ 0 0 0 ENSG00000122121|ENST00000371106|XPNPEP2 ENSG00000122121|ENST00000371106|XPNPEP2 ENSG00000122121|ENST00000371106|XPNPEP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2594299316406 2 465.216183 928.417813 NaN NaN NaN NaN NaN NaN NaN 40.773 1 40.773 40.273 41.273 0 0 0 0 0.2074 1 7590 7590 19.439 7.7987 1 47034 3208 31285 31305 46279 46279 -0.04925889501760139 TSIFAGQQK 9 Unmodified _TSIFAGQQK_ 0 0 0 REV__nc|ENSG00000101977|P10911|MCF2 REV__nc|ENSG00000101977|P10911|MCF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2646484375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 62.066 1 62.066 61.566 62.566 0 0 0 0 0.18489 1 11913 11913 22.109 20.195 1 + 47035 14813 31286 31306 46280 46280 0.02332883409144415 TSIIDAETA 9 Unmodified _TSIIDAETA_ 0 0 0 REV__PPP2R2B|p.G397Afs*31|1|0.1|ENSG00000156475|chr5:146590089-146590089|C/-|frameshift_variant REV__PPP2R2B|p.G397Afs*31|1|0.1|ENSG00000156475|chr5:146590089-146590089|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22650146484375 2 460.732197 919.449842 0.080309 3.7001E-05 0.40051 0.00018453 0.48082 0.00022153 460.73239010098337 62.21 0.53297 58.841 58.532 59.065 -3.3694 19 14 2 0 0 0 0.69192 1 11555 11555 14.838 0 1 974620 + 47036 17260 31287 31307 46281 46281 -0.013105218186069578 TSIKDCGVYT 10 Unmodified _TSIKDCGVYT_ 0 0 0 PAPPA|p.L1144Dfs*7|1|0.39|ENSG00000182752|chr9:116334893-116334894|CT/-|frameshift_variant;PAPPA|p.L1488Qfs*6|1|0.82|ENSG00000182752|chr9:116362706-116362707|CT/-|frameshift_variant;ENSG00000182752|ENST00000328252|PAPPA PAPPA|p.L1144Dfs*7|1|0.39|ENSG00000182752|chr9:116334893-116334894|CT/-|frameshift_variant PAPPA|p.L1144Dfs*7|1|0.39|ENSG00000182752|chr9:116334893-116334894|CT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7754516601562 2 543.760432 1085.50631 0.32557 0.00017703 1.6035 0.00087189 1.929 0.0010489 544.2626425333851 117.99 0.56315 117.99 117.55 118.11 0 24 15 2 0 0 0 0.65108 1 23210 23210 16.149 1.7437 1 2043700 47037 6809 31288 31308 46282 46282 -0.03302217253599338 TSIKLDSVK 9 Unmodified _TSIKLDSVK_ 0 0 0 REV__ENST00000323387.5_10:47380223-47380502:+|nuORF REV__ENST00000323387.5_10:47380223-47380502:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.0096130371094 3 330.865847 989.575711 0.10716 3.5457E-05 0.16975 5.6164E-05 0.27691 9.1621E-05 330.86582841590996 36.979 0.50872 34.631 34.38 34.889 -2.3479 34 14 3 0 0 0 0.87609 1 6561 6561 4.5289 0 1 2288200 + 47038 15686 31289 31309 46283 46283 0.08050609757481197 TSIKLDSVK 9 Unmodified _TSIKLDSVK_ 0 0 0 REV__ENST00000323387.5_10:47380223-47380502:+|nuORF REV__ENST00000323387.5_10:47380223-47380502:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 330.865847 989.575711 -0.43673 -0.0001445 0.97668 0.00032315 0.53995 0.00017865 330.8661826360026 34.816 0.82213 34.816 34.346 35.168 0 0.17454 0.00034067 NaN 4.5289 38 23 3 NaN NaN NaN NaN 0 NaN NaN 0 1765000 + 47039 15686 31289 31309 0.08050609757481197 TSIKLDSVK 9 Unmodified _TSIKLDSVK_ 0 0 0 REV__ENST00000323387.5_10:47380223-47380502:+|nuORF REV__ENST00000323387.5_10:47380223-47380502:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 330.865847 989.575711 -0.67976 -0.00022491 0.89052 0.00029464 0.21075 6.973E-05 330.8660753211485 36.975 0.61789 34.506 34.188 34.806 -2.4688 -0.1353 0.00025514 NaN 4.5289 37 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2169800 + 47040 15686 31289 31309 0.08050609757481197 TSIKLDSVK 9 Unmodified _TSIKLDSVK_ 0 0 0 REV__ENST00000323387.5_10:47380223-47380502:+|nuORF REV__ENST00000323387.5_10:47380223-47380502:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 330.865847 989.575711 -0.43532 -0.00014403 0.50097 0.00016575 0.065652 2.1722E-05 330.86593735895127 36.951 0.5657 34.613 34.312 34.877 -2.3375 -0.028266 -0.00013152 NaN 4.5289 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2107000 + 47041 15686 31289 31309 0.08050609757481197 TSILHRLK 8 Unmodified _TSILHRLK_ 0 0 0 SYNE1|p.R8101H|1|0.19|ENSG00000131018|chr6:152151969-152151969|C/T|missense_variant SYNE1|p.R8101H|1|0.19|ENSG00000131018|chr6:152151969-152151969|C/T|missense_variant SYNE1|p.R8101H|1|0.19|ENSG00000131018|chr6:152151969-152151969|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.29473876953125 3 323.206426 966.597449 NaN NaN NaN NaN NaN NaN NaN 8.2151 1 8.2151 7.7151 8.7151 0 0 0 0 0.21486 1 834 834 0.45834 0 1 47042 25806 31290 31310 46284 46284 0.11281459296696994 TSIPVVIDEA 10 Unmodified _TSIPVVIDEA_ 0 0 0 REV__MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant REV__MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2756958007812 2 522.284597 1042.55464 NaN NaN NaN NaN NaN NaN NaN 128.03 1 123.41 122.91 123.91 -4.6172 0 0 0 0.22583 1 25245 25245 13.906 1.3745 1 + 47043 18124 31291 31311 46285 46285 0.03506599657953302 TSISPHASY 9 Unmodified _TSISPHASY_ 0 0 0 REV__ENST00000257963.8_1_12:52388547-52388796:+|nuORF REV__ENST00000257963.8_1_12:52388547-52388796:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.765869140625 2 481.732532 961.45051 NaN NaN NaN NaN NaN NaN NaN 44.697 1 41.907 41.407 42.407 -2.79 0 0 0 0.20628 1 8404 8404 21.747 2.3076 1 + 47044 20146 31292 31312 46286 46286 -0.031756823789010014 TSITYTNK 8 Unmodified _TSITYTNK_ 0 0 0 ENST00000319357.5_1_7:43664520-43664628:+|nuORF ENST00000319357.5_1_7:43664520-43664628:+|nuORF ENST00000319357.5_1_7:43664520-43664628:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24603271484375 2 464.242732 926.470912 0.69353 0.00032197 -0.88827 -0.00041237 -0.19473 -9.0404E-05 464.24246147524565 23.148 1.1578 21.595 21.234 22.392 -1.5532 96 32 5 0 0 0 8448 1 3941 3941 1.4551 0.61013 1 213070000 47045 8699 31293 31313 46287 46287 0.004734882809088958 TSIVPPRSPQ 10 Unmodified _TSIVPPRSPQ_ 0 0 0 ENST00000290277.10_1_X:47424441-47424519:+|nuORF ENST00000290277.10_1_X:47424441-47424519:+|nuORF ENST00000290277.10_1_X:47424441-47424519:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2720947265625 2 541.303655 1080.59276 0.33284 0.00018017 -3.4225 -0.0018526 -3.0897 -0.0016725 541.3009784739273 138.68 0.32062 133.83 133.64 133.97 -4.8492 9 5 2 0 0 0 0.88533 1 26691 26691 5.2969 0 1 1085300 47046 8471 31294 31314 46288 46288 0.05568530363279933 TSIWPGNLR 9 Unmodified _TSIWPGNLR_ 0 0 0 REV__ENSG00000198768|ENST00000371149|APCDD1L REV__ENSG00000198768|ENST00000371149|APCDD1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2667236328125 2 522.285266 1042.55598 -1.0717 -0.00055976 -2.5969 -0.0013563 -3.6686 -0.0019161 522.7855499973078 18.38 0.34034 17.108 16.864 17.204 -1.2722 15 9 2 0 0 0 0.84208 1 2739 2739 3.9444 0 1 717740 + 47047 19447 31295 31315 46289 46289 0.036402785373638835 TSKAPESGP 9 Unmodified _TSKAPESGP_ 0 0 0 ADGRG4|p.R1598Qfs*86|1|0.06|ENSG00000156920|chrX:136348492-136348493|-/C|frameshift_variant;ADGRG4|p.N1783Kfs*3|1|0.45|ENSG00000156920|chrX:136349048-136349049|-/A|frameshift_variant;ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ADGRG4|p.D2874Rfs*16|1|0.45|ENSG00000156920|chrX:136403281-136403282|-/A|frameshift_variant;ADGRG4|p.F2955Vfs*21|1|0.32|ENSG00000156920|chrX:136405894-136405895|-/G|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4 ADGRG4|p.R1598Qfs*86|1|0.06|ENSG00000156920|chrX:136348492-136348493|-/C|frameshift_variant ADGRG4|p.R1598Qfs*86|1|0.06|ENSG00000156920|chrX:136348492-136348493|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2191162109375 2 437.219257 872.423961 -0.48688 -0.00021287 0.5538 0.00024213 0.06692 2.9259E-05 437.2194805166386 35.743 1.1014 33.349 32.915 34.016 -2.3938 62 30 3 0 0 0 0.24122 1 6657 6657 1.6919 0 1 3754500 47048 80 31296 31316 46290 46290 -0.017353712702401936 TSKDGEGSCY 10 Unmodified _TSKDGEGSCY_ 0 0 0 ENSG00000139970|ENST00000267484|RTN1;RTN1|p.I249Sfs*16|1|0.17|ENSG00000139970|chr14:59745978-59745978|T/-|frameshift_variant;RTN1|p.E302*|1|0.31|ENSG00000139970|chr14:59745820-59745821|-/T|frameshift_variant ENSG00000139970|ENST00000267484|RTN1 ENSG00000139970|ENST00000267484|RTN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6896362304688 2 523.708396 1045.40224 -0.090864 -4.7586E-05 -1.7542 -0.0009187 -1.8451 -0.00096628 523.707479432593 82.072 0.69025 78.384 78.187 78.878 -3.6879 31 19 2 0 0 0 0.5575 1 15721 15721 21.537 1.1224 1 1640300 47049 4272 31297 31317 46291 46291 -0.11864544081095119 TSKDVRSAFA 10 Unmodified _TSKDVRSAFA_ 0 0 0 REV__ENSG00000184305|ENST00000509176|CCSER1 REV__ENSG00000184305|ENST00000509176|CCSER1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2793579101562 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 66.888 1 63.391 62.891 63.891 -3.4965 0 0 0 2.8426 1 12543 12543 0.26539 0 1 + 47050 18889 31298 31318 46292 46292 0.019316534665676954 TSKFWYKPHLS 11 Unmodified _TSKFWYKPHLS_ 0 0 0 nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.246826171875 3 465.24695 1392.71902 NaN NaN NaN NaN NaN NaN NaN 26.87 1 25.088 24.588 25.588 -1.7821 0 0 0 0.22632 1 4756 4756 0.58532 0 1 47051 2604 31299 31319 46293 46293 0.03837036868571886 TSKGGKGG 8 Unmodified _TSKGGKGG_ 0 0 0 ENST00000472267.5_1_6:30585642-30587416:+|nuORF ENST00000472267.5_1_6:30585642-30587416:+|nuORF ENST00000472267.5_1_6:30585642-30587416:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 346.1909484863281 2 346.190303 690.366053 NaN NaN NaN NaN NaN NaN NaN 29.583 1 29.583 29.083 30.083 0 0 0 0 0.2396 1 5291 5291 0.0082765 0 1 47052 10222 31300 31320 46294 46294 0.008484115950068372 TSKHVPPPP 9 Unmodified _TSKHVPPPP_ 0 0 0 ENST00000445946.3_1_10:89621729-89621954:-|nuORF ENST00000445946.3_1_10:89621729-89621954:-|nuORF ENST00000445946.3_1_10:89621729-89621954:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.252685546875 2 480.269084 958.523616 0.12425 5.9673E-05 0.22506 0.00010809 0.34931 0.00016776 480.2691276392851 40.021 2.0358 40.021 39.477 41.513 0 104 57 3 0 0 0 0.48644 1 7387 7387 20.454 0 1 11984000 47053 9939 31301 31321 46295 46295 0.042694911343687636 TSKIKHVQRY 10 Unmodified _TSKIKHVQRY_ 0 0 0 REV__nc|ENSG00000130997|Q7Z5Q5-3|POLN REV__nc|ENSG00000130997|Q7Z5Q5-3|POLN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.754150390625 2 630.364579 1258.7146 -0.77104 -0.00048604 -2.4687 -0.0015562 -3.2397 -0.0020422 630.8645027891439 19.474 0.20719 17.839 17.739 17.946 -1.6351 8 5 2 0 0 0 0.75565 1 2929 2929 3.9444 0.94915 1 206470 + 47054 16047 31302 31322 46296 46296 0.09559572445664344 TSKKKDSR 8 Unmodified _TSKKKDSR_ 0 0 0 REV__ENSG00000204165|ENST00000374251|CXorf65 REV__ENSG00000204165|ENST00000374251|CXorf65 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.0385437011719 3 317.185691 948.535243 NaN NaN NaN NaN NaN NaN NaN 65.314 1 65.314 64.814 65.814 0 0 0 0 0.21486 1 12590 12590 1.4819 0 1 + 47055 19516 31303 31323 46297 46297 0.058916881577033564 TSKLRVKP 8 Unmodified _TSKLRVKP_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16961669921875 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 13.479 1 13.479 12.979 13.979 0 0 0 0 0.2396 1 1948 1948 0.0082765 0 1 47056 4752 31304 31324 46298 46298 0.11986056922410171 TSKQSSFTA 9 Unmodified _TSKQSSFTA_ 0 0 0 REV__EFCAB7|p.F431Lfs*3|2|0.41|ENSG00000203965|chr1:63557186-63557186|T/-|frameshift_variant REV__EFCAB7|p.F431Lfs*3|2|0.41|ENSG00000203965|chr1:63557186-63557186|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7398681640625 2 478.737814 955.461075 0.0030207 1.4461E-06 -0.64509 -0.00030883 -0.64207 -0.00030738 478.7374090536517 47.72 1.2903 44.778 44.134 45.425 -2.9421 58 36 2 0 0 0 0.37087 1 8601 8601 0.40827 0 1 1317200 + 47057 13784 31305 31325 46299 46299 -0.018436997244634767 TSKVHVQTIN 10 Unmodified _TSKVHVQTIN_ 0 0 0 ENSG00000137814|ENST00000260372|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2;nc|ENSG00000137814|Q9NVX0-2|HAUS2 ENSG00000137814|ENST00000260372|HAUS2 ENSG00000137814|ENST00000260372|HAUS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.0828857421875 3 376.212017 1125.61422 -0.017745 -6.6758E-06 -1.1958 -0.00044986 -1.2135 -0.00045654 376.21123286202436 45.474 1.1124 42.609 42.162 43.275 -2.8653 51 31 3 0 0 0 0.75099 1 8209 8209 5.4027 1.8157 1 1645300 47058 4114 31306 31326 46300 46300 0.056439153920109675 TSKVHVQTIN 10 Unmodified _TSKVHVQTIN_ 0 0 0 ENSG00000137814|ENST00000260372|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2;nc|ENSG00000137814|Q9NVX0-2|HAUS2 ENSG00000137814|ENST00000260372|HAUS2 ENSG00000137814|ENST00000260372|HAUS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 376.212017 1125.61422 0.074526 2.8038E-05 -0.44101 -0.00016591 -0.36649 -0.00013788 376.2117988643589 42.824 0.80293 42.824 42.387 43.19 0 0.16383 0.00023665 NaN 5.4027 35 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1475300 47059 4114 31306 31326 0.056439153920109675 TSKVHVQTIN 10 Unmodified _TSKVHVQTIN_ 0 0 0 ENSG00000137814|ENST00000260372|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2;nc|ENSG00000137814|Q9NVX0-2|HAUS2 ENSG00000137814|ENST00000260372|HAUS2 ENSG00000137814|ENST00000260372|HAUS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 376.212017 1125.61422 -0.24025 -9.0384E-05 -1.2471 -0.00046916 -1.4873 -0.00055954 376.21125461913545 45.42 1.1593 42.579 42.152 43.311 -2.8409 -0.081899 -0.00067308 NaN 5.4027 49 32 3 NaN NaN NaN NaN 0 NaN NaN 0 1833000 47060 4114 31306 31326 0.056439153920109675 TSKVHVQTIN 10 Unmodified _TSKVHVQTIN_ 0 0 0 ENSG00000137814|ENST00000260372|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2;nc|ENSG00000137814|Q9NVX0-2|HAUS2 ENSG00000137814|ENST00000260372|HAUS2 ENSG00000137814|ENST00000260372|HAUS2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 376.212017 1125.61422 -0.79157 -0.0002978 -0.57293 -0.00021554 -1.3645 -0.00051334 376.2114069932303 45.497 0.97708 42.63 42.154 43.131 -2.8666 -0.03021 8.7762E-05 NaN 5.4027 46 27 3 NaN NaN NaN NaN 0 NaN NaN 0 1340600 47061 4114 31306 31326 0.056439153920109675 TSLCNGHWTRS 11 Unmodified _TSLCNGHWTRS_ 0 0 0 REV__ENST00000512037.2_1_4:103650201-103650651:-|nuORF REV__ENST00000512037.2_1_4:103650201-103650651:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 421.3351745605469 3 421.196261 1260.56695 -0.0061519 -2.5912E-06 -0.35235 -0.00014841 -0.3585 -0.000151 421.1961038415119 39.416 0.59304 36.974 36.685 37.278 -2.4419 38 16 3 0 0 0 0.92792 1 6986 6986 4.4062 1.9714 1 6219700 + 47062 22553 31307 31327 46301 46301 -0.052906871506593234 TSLDQNLLG 9 Unmodified _TSLDQNLLG_ 0 0 0 tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1 tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1 tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.239501953125 2 480.753464 959.492375 -0.12042 -5.7895E-05 0.1536 7.3845E-05 0.033177 1.595E-05 480.7534521981586 50.706 0.55665 47.654 47.331 47.888 -3.0517 41 15 3 0 0 0 0.57447 1 9270 9270 14.838 1.7958 1 3165200 47063 26022 31308 31328 46302 46302 0.011008733096332435 TSLDRNTL 8 Unmodified _TSLDRNTL_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.246337890625 2 460.245806 918.47706 0.14982 6.8953E-05 -0.068564 -3.1556E-05 0.081253 3.7396E-05 460.24578921928605 39.134 0.4854 36.729 36.475 36.961 -2.4049 19 13 2 0 0 0 0.31324 1 6961 6961 36.127 0 1 633190 47064 3189 31309 31329 46303 46303 0.014560065124328503 TSLFECPVCFD 11 Unmodified _TSLFECPVCFD_ 0 0 0 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.767578125 2 630.7674 1259.52025 NaN NaN NaN NaN NaN NaN NaN 27.418 1 27.418 26.918 27.918 0 0 0 0 0.2367 1 4836 4836 2.9952 0 1 47065 6742 31310 31330 46304 46304 -0.0991330781682791 TSLILKLFVE 10 Unmodified _TSLILKLFVE_ 0 0 0 REV__ENSG00000164818|ENST00000297440|DNAAF5 REV__ENSG00000164818|ENST00000297440|DNAAF5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 581.8598022460938 2 581.857732 1161.70091 NaN NaN NaN NaN NaN NaN NaN 52.463 1 52.463 51.963 52.963 0 0 0 0 0.22588 1 9972 9972 6.7232 0.51738 1 + 47066 17712 31311 31331 46305 46305 0.1265290189382995 TSLLHRARL 9 Unmodified _TSLLHRARL_ 0 0 0 CEP170|p.R1104H|1|0.33|ENSG00000143702|chr1:243164649-243164649|C/T|missense_variant CEP170|p.R1104H|1|0.33|ENSG00000143702|chr1:243164649-243164649|C/T|missense_variant CEP170|p.R1104H|1|0.33|ENSG00000143702|chr1:243164649-243164649|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2725830078125 2 533.827632 1065.64071 0.33326 0.00017791 -1.0059 -0.000537 -0.67268 -0.00035909 533.8276212425105 80.579 0.58603 76.74 76.391 76.977 -3.8392 21 16 2 0 0 0 0.86532 1 15309 15309 2.0598 0 1 799690 47067 488 31312 31332 46306 46306 0.11051649073965564 TSLNYCES 8 Unmodified _TSLNYCES_ 0 0 0 REV__ENSG00000118322|ENST00000327245|ATP10B REV__ENSG00000118322|ENST00000327245|ATP10B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23785400390625 2 458.689475 915.364398 -0.043083 -1.9762E-05 1.1023 0.00050562 1.0592 0.00048586 458.6899263415829 63.676 0.45522 60.679 60.455 60.91 -2.9975 19 12 2 0 0 0 0.97173 1 12303 12303 7.9102 0 1 1371200 + 47068 15548 31313 31333 46307 46307 -0.09667010275927623 TSLPPSTAPG 10 Unmodified _TSLPPSTAPG_ 0 0 0 REV__ADGRL1|p.Q699Rfs*47|1|0.4|ENSG00000072071|chr19:14159159-14159159|G/-|frameshift_variant REV__ADGRL1|p.Q699Rfs*47|1|0.4|ENSG00000072071|chr19:14159159-14159159|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24603271484375 2 464.242732 926.470912 0.69353 0.00032197 -0.88827 -0.00041237 -0.19473 -9.0404E-05 464.24246147524565 23.148 1.1578 21.595 21.234 22.392 -1.5532 96 32 5 0 0 0 0.45952 1 3943 3943 26.884 5.137 1 213070000 + 47069 12965 31314 31334 46308 46308 0.004734882809088958 TSLPPSTAPG 10 Unmodified _TSLPPSTAPG_ 0 0 0 REV__ADGRL1|p.Q699Rfs*47|1|0.4|ENSG00000072071|chr19:14159159-14159159|G/-|frameshift_variant REV__ADGRL1|p.Q699Rfs*47|1|0.4|ENSG00000072071|chr19:14159159-14159159|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2457580566406 2 464.242732 926.470912 -0.43708 -0.00020291 0.16054 7.4529E-05 -0.27654 -0.00012838 464.24284583234964 23.318 1.8566 21.53 21.189 23.045 -1.7886 134 53 5 0 0 0 0.35262 1 3708 3708 0.84494 0.43668 1 137720000 + 47070 12965 31314 31334 46309 46309 0.004734882809088958 TSLSNEFY 8 Unmodified _TSLSNEFY_ 0 0 0 REV__ENSG00000145390|ENST00000692078|USP53 REV__ENSG00000145390|ENST00000692078|USP53 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2431945800781 2 480.71909 959.423627 0.020167 9.6944E-06 0.25901 0.00012451 0.27917 0.0001342 480.7190993046491 29.244 0.37941 29.244 29.09 29.469 0 14 10 2 0 0 0 0.96284 1 5243 5243 13.508 0 1 444790 + 47071 16836 31315 31335 46310 46310 -0.057707909900841514 TSLSNEFY 8 Unmodified _TSLSNEFY_ 0 0 0 REV__ENSG00000145390|ENST00000692078|USP53 REV__ENSG00000145390|ENST00000692078|USP53 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 480.71909 959.423627 0.33502 0.00016105 0.14754 7.0925E-05 0.48255 0.00023197 480.7191336754952 31.503 0.31711 29.272 29.129 29.446 -2.2305 0.0053424 -2.9008E-05 NaN 13.508 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 633900 + 47072 16836 31315 31335 -0.057707909900841514 TSLSNEFY 8 Unmodified _TSLSNEFY_ 0 0 0 REV__ENSG00000145390|ENST00000692078|USP53 REV__ENSG00000145390|ENST00000692078|USP53 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 480.71909 959.423627 0.31757 0.00015266 0.17509 8.4169E-05 0.49266 0.00023683 480.71900531635026 31.311 0.31538 29.285 29.093 29.409 -2.0264 0.017408 -2.5196E-06 NaN 13.508 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 590070 + 47073 16836 31315 31335 -0.057707909900841514 TSLYTNWY 8 Unmodified _TSLYTNWY_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6760864257812 2 524.242732 1046.47091 0.22625 0.00011861 -0.71136 -0.00037293 -0.48511 -0.00025432 524.2422967080964 24.989 0.26769 24.989 24.813 25.081 0 10 7 2 0 0 0 1.0191 1 4317 4317 8.5933 2.8614 1 676020 47074 1318 31316 31336 46311 46311 -0.050465117191151876 TSLYTNWY 8 Unmodified _TSLYTNWY_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.242732 1046.47091 0.12172 6.3813E-05 -0.84022 -0.00044048 -0.7185 -0.00037667 524.2424023489322 26.722 0.3742 24.8 24.609 24.984 -1.9222 -0.094247 -5.4324E-05 NaN 8.5933 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 374420 47075 1318 31316 31336 -0.050465117191151876 TSMESTVSS 9 Unmodified _TSMESTVSS_ 0 0 0 ENSG00000124198|ENST00000371917|ARFGEF2;ARFGEF2|p.Q1130Hfs*19|1|0.05|ENSG00000124198|chr20:48998462-48998463|-/CAAGCAAAGCCTC|frameshift_variant ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1630859375 3 310.135785 927.385527 NaN NaN NaN NaN NaN NaN NaN 148.48 1 143.77 143.27 144.27 -4.7095 0 0 0 0.19626 1 29486 29486 0.073264 0 1 47076 3298 31317 31337 46312 46312 -0.0810704496705057 TSMESTVSS 9 Unmodified _TSMESTVSS_ 0 0 0 ENSG00000124198|ENST00000371917|ARFGEF2;ARFGEF2|p.Q1130Hfs*19|1|0.05|ENSG00000124198|chr20:48998462-48998463|-/CAAGCAAAGCCTC|frameshift_variant ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1653137207031 3 310.135785 927.385527 NaN NaN NaN NaN NaN NaN NaN 152.5 1 147.74 147.24 148.24 -4.7523 0 0 0 0.19632 1 30303 30303 0.073264 0 1 47077 3298 31317 31337 46313 46313 -0.0810704496705057 TSMLKIDPG 9 Unmodified _TSMLKIDPG_ 0 0 0 ENST00000282441.9_1_11:102102101-102102167:+|nuORF ENST00000282441.9_1_11:102102101-102102167:+|nuORF ENST00000282441.9_1_11:102102101-102102167:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25445556640625 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 19.733 1 18.408 17.908 18.908 -1.3251 0 0 0 0.23508 1 3026 3026 7.9102 0 1 47078 8447 31318 31338 46314 46314 0.013190054429287557 TSNDMEYE 8 Unmodified _TSNDMEYE_ 0 0 0 KIF19|p.H272Tfs*16|1|0.15|ENSG00000196169|chr17:74346412-74346412|C/-|frameshift_variant;nc|ENSG00000196169|Q2TAC6-3|KIF19;ENST00000359939.10_1_17:72322488-72347101:+|nuORF;nc|ENSG00000196169|Q2TAC6-2|KIF19;ENST00000547389.1_1_17:72322488-72347101:+|nuORF;ENSG00000196169|ENST00000389916|KIF19 KIF19|p.H272Tfs*16|1|0.15|ENSG00000196169|chr17:74346412-74346412|C/-|frameshift_variant KIF19|p.H272Tfs*16|1|0.15|ENSG00000196169|chr17:74346412-74346412|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 495.6961364746094 2 494.681847 987.349141 0.46776 0.00023139 0.61937 0.00030639 1.0871 0.00053778 494.6837528069208 99.703 0.79675 99.703 99.338 100.13 0 81 22 4 0 0 0 8448 1 19572 19572 0.62683 0 1 10662000 47079 7239 31319 31339 46315 46315 -0.1450392186377485 TSNFCHPN 8 Unmodified _TSNFCHPN_ 0 0 0 A2ML1|p.Y351C|1|0.12|ENSG00000166535|chr12:8839194-8839194|A/G|missense_variant A2ML1|p.Y351C|1|0.12|ENSG00000166535|chr12:8839194-8839194|A/G|missense_variant A2ML1|p.Y351C|1|0.12|ENSG00000166535|chr12:8839194-8839194|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2315673828125 2 460.189977 918.365401 0.45328 0.0002086 0.97918 0.00045061 1.4325 0.00065921 460.1903632088125 42.639 0.73591 42.639 42.351 43.087 0 36 20 2 0 0 0 0.93477 1 7954 7954 12.532 0.89125 1 1692800 47080 1 31320 31340 46316 46316 -0.097047511163737 TSNFCHPN 8 Unmodified _TSNFCHPN_ 0 0 0 A2ML1|p.Y351C|1|0.12|ENSG00000166535|chr12:8839194-8839194|A/G|missense_variant A2ML1|p.Y351C|1|0.12|ENSG00000166535|chr12:8839194-8839194|A/G|missense_variant A2ML1|p.Y351C|1|0.12|ENSG00000166535|chr12:8839194-8839194|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 460.189977 918.365401 -0.066101 -3.0419E-05 1.2577 0.00057879 1.1916 0.00054837 460.19051661810494 45.61 0.82579 42.745 42.449 43.275 -2.8653 0.014237 3.7581E-05 NaN 12.532 41 23 2 NaN NaN NaN NaN 0 NaN NaN 0 3111200 47081 1 31320 31340 -0.097047511163737 TSNFCHPN 8 Unmodified _TSNFCHPN_ 0 0 0 A2ML1|p.Y351C|1|0.12|ENSG00000166535|chr12:8839194-8839194|A/G|missense_variant A2ML1|p.Y351C|1|0.12|ENSG00000166535|chr12:8839194-8839194|A/G|missense_variant A2ML1|p.Y351C|1|0.12|ENSG00000166535|chr12:8839194-8839194|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 460.189977 918.365401 -0.10737 -4.9409E-05 1.3535 0.00062286 1.2461 0.00057345 460.19057352018694 45.665 0.86658 42.798 42.469 43.336 -2.8665 0.067782 0.00012574 NaN 12.532 50 24 3 NaN NaN NaN NaN 0 NaN NaN 0 2281200 47082 1 31320 31340 -0.097047511163737 TSNIYDGSA 9 Unmodified _TSNIYDGSA_ 0 0 0 nc|ENSG00000159650|Q96N76-2|UROC1;ENSG00000159650|ENST00000290868|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 464.126220703125 2 464.206347 926.39814 0.43087 0.00020001 -0.81851 -0.00037996 -0.38764 -0.00017995 464.20587137279824 30.231 0.69914 28.114 27.807 28.507 -2.1167 33 19 2 0 0 0 0.8319 1 5398 5398 1.8442 0 1 751260 47083 12402 31321 31341 46317 46317 -0.0680026551251558 TSNIYDGSA 9 Unmodified _TSNIYDGSA_ 0 0 0 nc|ENSG00000159650|Q96N76-2|UROC1;ENSG00000159650|ENST00000290868|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.206347 926.39814 0.54892 0.00025481 -0.97779 -0.00045389 -0.42886 -0.00019908 464.20579772364596 30.318 0.56242 28.243 27.901 28.464 -2.0743 0.025897 -0.00010299 NaN 1.8442 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 459830 47084 12402 31321 31341 -0.0680026551251558 TSNLEPVVC 9 Unmodified _TSNLEPVVC_ 0 0 0 REV__SLC38A1|p.I246V|1|0.34|ENSG00000111371|chr12:46204387-46204387|T/C|missense_variant REV__SLC38A1|p.I246V|1|0.34|ENSG00000111371|chr12:46204387-46204387|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2533874511719 2 481.236593 960.458632 0.084425 4.0628E-05 -0.45929 -0.00022102 -0.37486 -0.0001804 481.2363737643982 77.071 0.73269 73.305 72.912 73.644 -3.7664 50 20 3 0 0 0 0.57447 1 14535 14535 14.838 0.93222 1 4851200 + 47085 24641 31322 31342 46318 46318 -0.02317871453783482 TSNLTQRT 8 Unmodified _TSNLTQRT_ 0 0 0 REV__nc|ENSG00000102606|Q14155-6|ARHGEF7 REV__nc|ENSG00000102606|Q14155-6|ARHGEF7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2405090332031 2 460.743431 919.472308 0.2414 0.00011122 1.4152 0.00065206 1.6566 0.00076328 460.7441694874324 28.653 0.34969 26.898 26.7 27.05 -1.7552 14 9 2 0 0 0 0.97173 1 4810 4810 12.532 12.532 1 775020 + 47086 14844 31323 31343 46319 46319 0.00935122369662622 TSNLTQRT 8 Unmodified _TSNLTQRT_ 0 0 0 REV__nc|ENSG00000102606|Q14155-6|ARHGEF7 REV__nc|ENSG00000102606|Q14155-6|ARHGEF7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.743431 919.472308 0.64386 0.00029665 0.546 0.00025157 1.1899 0.00054822 460.74386551751013 28.737 0.34302 26.781 26.638 26.981 -1.9561 -0.058671 -0.00026295 NaN 12.532 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 434260 + 47087 14844 31323 31343 0.00935122369662622 TSPCCDPNWG 10 Unmodified _TSPCCDPNWG_ 0 0 0 REV__ENST00000321037.4_1_6:46097759-46107324:+|nuORF REV__ENST00000321037.4_1_6:46097759-46107324:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.4715270996094 3 360.468882 1078.38482 NaN NaN NaN NaN NaN NaN NaN 100.78 1 96.791 96.291 97.291 -3.9895 0 0 0 2.8426 1 19367 19367 3.8763 3.2495 1 + 47088 20549 31324 31344 46320 46320 -0.15124162887764214 TSPGRPSEV 9 Unmodified _TSPGRPSEV_ 0 0 0 ENST00000268616.8_1_16:87441547-87441679:-|nuORF ENST00000268616.8_1_16:87441547-87441679:-|nuORF ENST00000268616.8_1_16:87441547-87441679:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2392883300781 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 40.623 1 40.623 40.123 41.123 0 0 0 0 0.22251 1 7559 7559 16.942 1.0951 1 47089 8389 31325 31345 46321 46321 -0.005682800046088232 TSPGTGLS 8 Unmodified _TSPGTGLS_ 0 0 0 ENST00000476153.6_1_1:205492708-205496295:+|nuORF ENST00000476153.6_1_1:205492708-205496295:+|nuORF ENST00000476153.6_1_1:205492708-205496295:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.1651306152344 2 360.182143 718.349734 NaN NaN NaN NaN NaN NaN NaN 108.09 1 103.96 103.46 104.46 -4.135 0 0 0 0.23664 1 20796 20796 3.2813 0 1 47090 10282 31326 31346 46322 46322 -0.020707143617642032 TSPGVAHNWL 10 Unmodified _TSPGVAHNWL_ 0 0 0 REV__TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant REV__TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2662963867188 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 160.64 1 160.64 160.14 161.14 0 0 0 0 2.8426 1 32257 32257 0.20733 0.16354 1 + 47091 24780 31327 31347 46323 46323 -0.001803118423140404 TSPLVQTSP 9 Unmodified _TSPLVQTSP_ 0 0 0 REV__ENST00000558912.1_1_15:40631124-40631346:-|nuORF REV__ENST00000558912.1_1_15:40631124-40631346:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2372741699219 2 465.250557 928.486562 -0.083326 -3.8768E-05 0.91713 0.00042669 0.8338 0.00038793 465.2507055986179 25.698 0.14371 23.845 23.74 23.883 -1.8534 5 3 2 0 0 0 0.82765 1 4214 4214 2.9952 1.151 1 268510 + 47092 23026 31328 31348 46324 46324 0.01945774797957256 TSPNRDED 8 Unmodified _TSPNRDED_ 0 0 0 REV__nc|ENSG00000196428|O75157|TSC22D2 REV__nc|ENSG00000196428|O75157|TSC22D2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.200439453125 3 311.801794 932.383553 -0.47383 -0.00014774 -1.2048 -0.00037566 -1.6786 -0.0005234 311.8014109869056 62.15 0.44956 58.911 58.69 59.139 -3.2395 16 12 2 0 0 0 1.0281 1 11669 11669 0.45834 0 1 931350 + 47093 24223 31329 31349 46325 46325 -0.08534337660671554 TSPNRDED 8 Unmodified _TSPNRDED_ 0 0 0 REV__nc|ENSG00000196428|O75157|TSC22D2 REV__nc|ENSG00000196428|O75157|TSC22D2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 311.801794 932.383553 -0.22831 -7.1187E-05 -1.507 -0.00046989 -1.7353 -0.00054108 311.8013136297482 61.892 0.63593 58.93 58.616 59.252 -2.9614 0.0096145 -0.00015949 NaN 0.45834 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1279100 + 47094 24223 31329 31349 -0.08534337660671554 TSPPYCCVDLY 11 Unmodified _TSPPYCCVDLY_ 0 0 0 BCAS3-CA10|1|fusion;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3 BCAS3-CA10|1|fusion BCAS3-CA10|1|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.76513671875 2 630.7674 1259.52025 NaN NaN NaN NaN NaN NaN NaN 37.167 1 37.167 36.667 37.667 0 0 0 0 0.22943 1 6867 6867 8.7454 2.5396 1 47095 304 31330 31350 46326 46326 -0.09913307816805172 TSPRTSPSPY 10 Unmodified _TSPRTSPSPY_ 0 0 0 ENSG00000186103|ENST00000334384|ARGFX ENSG00000186103|ENST00000334384|ARGFX ENSG00000186103|ENST00000334384|ARGFX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77294921875 2 546.769645 1091.52474 0.10732 5.8681E-05 0.13592 7.4317E-05 0.24324 0.000133 546.7696602907054 59.42 1.1623 56.106 55.426 56.588 -3.3139 82 32 4 0 0 0 0.4942 1 11017 11017 24.991 2.2547 1 7418100 47096 7034 31331 31351 46327 46327 -0.017363392873676275 TSPVLVDIR 9 Unmodified _TSPVLVDIR_ 0 0 0 nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6 nc|ENSG00000121236|Q9C030|TRIM6 nc|ENSG00000121236|Q9C030|TRIM6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.0342102050781 3 333.865958 998.576045 -0.19302 -6.4442E-05 0.54644 0.00018244 0.35342 0.000118 333.8659889234934 31.505 0.42438 29.356 29.126 29.551 -2.1483 14 11 2 0 0 0 0.88284 1 5396 5396 0.96228 0 1 412890 47097 3172 31332 31352 46328 46328 0.07670029477321805 TSPVLVDIR 9 Unmodified _TSPVLVDIR_ 0 0 0 nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6 nc|ENSG00000121236|Q9C030|TRIM6 nc|ENSG00000121236|Q9C030|TRIM6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 333.865958 998.576045 -0.3795 -0.0001267 0.72036 0.0002405 0.34086 0.0001138 333.86610578663954 29.463 0.31304 29.463 29.297 29.61 0 0.076458 0.00055543 NaN 0.96228 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 333930 47098 3172 31332 31352 0.07670029477321805 TSPVLVDIR 9 Unmodified _TSPVLVDIR_ 0 0 0 nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6 nc|ENSG00000121236|Q9C030|TRIM6 nc|ENSG00000121236|Q9C030|TRIM6 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 333.865958 998.576045 0.29711 9.9195E-05 -0.38437 -0.00012833 -0.087254 -2.9131E-05 333.8658491120346 31.367 0.39117 29.341 29.163 29.554 -2.0264 -0.04599 -0.00055106 NaN 0.96228 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 749130 47099 3172 31332 31352 0.07670029477321805 TSQEQPRRHYA 11 Unmodified _TSQEQPRRHYA_ 0 0 0 IDH2|p.T146Lfs*15|1|0.49|ENSG00000182054|chr15:90088686-90088686|C/-|frameshift_variant;ENSG00000182054|ENST00000330062|IDH2 IDH2|p.T146Lfs*15|1|0.49|ENSG00000182054|chr15:90088686-90088686|C/-|frameshift_variant IDH2|p.T146Lfs*15|1|0.49|ENSG00000182054|chr15:90088686-90088686|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22857666015625 3 458.22873 1371.66436 0.23647 0.00010836 -1.1493 -0.00052663 -0.91281 -0.00041827 458.2282745126759 28.66 0.28043 26.905 26.7 26.981 -1.7552 15 7 3 0 0 0 0.73684 1 4825 4825 9.2438 3.0094 1 523670 47100 6762 31333 31353 46329 46329 -0.006605819501373844 TSQEQPRRHYA 11 Unmodified _TSQEQPRRHYA_ 0 0 0 IDH2|p.T146Lfs*15|1|0.49|ENSG00000182054|chr15:90088686-90088686|C/-|frameshift_variant;ENSG00000182054|ENST00000330062|IDH2 IDH2|p.T146Lfs*15|1|0.49|ENSG00000182054|chr15:90088686-90088686|C/-|frameshift_variant IDH2|p.T146Lfs*15|1|0.49|ENSG00000182054|chr15:90088686-90088686|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 458.22873 1371.66436 0.62473 0.00028627 -1.1719 -0.00053698 -0.54714 -0.00025071 458.5626072374473 28.767 0.34187 26.811 26.707 27.049 -1.9561 -0.046588 -1.199E-05 NaN 9.2438 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 570540 47101 6762 31333 31353 -0.006605819501373844 TSQIERDA 8 Unmodified _TSQIERDA_ 0 0 0 REV__ENST00000216407.4_1_12:68867655-68868498:+|nuORF REV__ENST00000216407.4_1_12:68867655-68868498:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2277526855469 2 460.227613 918.440674 NaN NaN NaN NaN NaN NaN NaN 21.33 1 21.33 20.83 21.83 0 0 0 0 0.21486 1 3564 3564 7.2892 0 1 + 47102 20014 31334 31354 46330 46330 -0.021808703842907562 TSQLPLELK 9 Unmodified _TSQLPLELK_ 0 0 0 REV__nc|ENSG00000205084|Q9H6L2-2|TMEM231 REV__nc|ENSG00000205084|Q9H6L2-2|TMEM231 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 514.3223266601562 2 514.802957 1027.59136 0.20474 0.0001054 -1.3296 -0.0006845 -1.1249 -0.0005791 514.8022087627012 135.57 0.38235 135.57 135.29 135.67 0 19 10 2 0 0 0 0.27464 1 26845 26845 29.082 4.0906 1 1682300 + 47103 24242 31335 31355 46331 46331 0.07866896274504143 TSQLPLELK 9 Unmodified _TSQLPLELK_ 0 0 0 REV__nc|ENSG00000205084|Q9H6L2-2|TMEM231 REV__nc|ENSG00000205084|Q9H6L2-2|TMEM231 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 514.802957 1027.59136 -0.46402 -0.00023888 0.57714 0.00029711 0.11312 5.8233E-05 514.8031200407448 140.47 0.60075 135.48 135.25 135.85 -4.9877 -0.02651 0.00084921 NaN 22.736 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2750900 + 47104 24242 31335 31355 0.07866896274504143 TSQLPLELK 9 Unmodified _TSQLPLELK_ 0 0 0 REV__nc|ENSG00000205084|Q9H6L2-2|TMEM231 REV__nc|ENSG00000205084|Q9H6L2-2|TMEM231 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 514.802957 1027.59136 0.25187 0.00012967 -0.56279 -0.00028972 -0.31091 -0.00016006 514.8027039947779 140.33 0.52777 135.47 135.22 135.74 -4.8615 -0.03902 -0.00032446 NaN 22.736 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1135200 + 47105 24242 31335 31355 0.07866896274504143 TSQLPQAE 8 Unmodified _TSQLPQAE_ 0 0 0 nc|ENSG00000048162|Q9Y3C1-3|NOP16;nc|ENSG00000048162|Q9Y3C1-2|NOP16 nc|ENSG00000048162|Q9Y3C1-3|NOP16 nc|ENSG00000048162|Q9Y3C1-3|NOP16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2203063964844 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 129.46 1 129.46 128.96 129.96 0 0 0 0 0.22757 1 25575 25575 0.62683 0.49901 1 47106 12215 31336 31356 46332 46332 -0.017353712702515622 TSQPEPNR 8 Unmodified _TSQPEPNR_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2550964355469 2 464.727781 927.441008 0.1848 8.588E-05 0.087105 4.048E-05 0.2719 0.00012636 464.72786797359856 24.797 0.36526 24.797 24.615 24.98 0 16 10 2 0 0 0 0.70613 1 4264 4264 13.508 13.508 1 514950 47107 1641 31337 31357 46333 46333 -0.025614506644274115 TSQQPLVR 8 Unmodified _TSQQPLVR_ 0 0 0 nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-4|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5 nc|ENSG00000140691|Q96C12-3|ARMC5 nc|ENSG00000140691|Q96C12-3|ARMC5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.239990234375 2 464.764166 927.513779 0.24802 0.00011527 -0.11959 -5.5581E-05 0.12843 5.9689E-05 464.7639933061004 37.018 0.42578 34.681 34.486 34.911 -2.3375 22 11 3 0 0 0 1.0011 1 6511 6511 4.3292 0 1 734480 47108 4320 31338 31358 46334 46334 0.047123031289856954 TSQRQVSN 8 Unmodified _TSQRQVSN_ 0 0 0 REV__nc|ENSG00000198825|Q9Y2H2-2|INPP5F REV__nc|ENSG00000198825|Q9Y2H2-2|INPP5F MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2347717285156 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 123.14 1 118.55 118.05 119.05 -4.5926 0 0 0 0.22757 1 23704 23704 0.62683 0 1 + 47109 19456 31339 31359 46335 46335 -0.010580482901445976 TSQSNTIPL 9 Unmodified _TSQSNTIPL_ 0 0 0 CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant;ENSG00000160161|ENST00000291495|CILP2 CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant CILP2|p.P1036Hfs*17|1|0.12|ENSG00000160161|chr19:19545647-19545647|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23699951171875 2 480.753464 959.492375 0.31142 0.00014971 -0.82097 -0.00039468 -0.50955 -0.00024497 480.75295994801303 28.663 1.2197 26.667 26.134 27.354 -1.9962 45 34 2 0 0 0 0.64382 1 4815 4815 10.074 1.3285 1 416560 47110 561 31340 31360 46336 46336 0.011008733096218748 TSQSTAPIV 9 Unmodified _TSQSTAPIV_ 0 0 0 REV__ENST00000371897.8_1_9:136337013-136337103:-|nuORF REV__ENST00000371897.8_1_9:136337013-136337103:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7476501464844 2 452.242732 902.470912 -0.44402 -0.0002008 0.68778 0.00031104 0.24376 0.00011024 452.2429802767628 35.615 0.67491 33.222 32.845 33.52 -2.3938 51 18 4 0 0 0 0.54354 1 6559 6559 16.942 0 1 8030900 + 47111 21014 31341 31361 46337 46337 0.015774882809068913 TSQSTAPIV 9 Unmodified _TSQSTAPIV_ 0 0 0 REV__ENST00000371897.8_1_9:136337013-136337103:-|nuORF REV__ENST00000371897.8_1_9:136337013-136337103:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 452.242732 902.470912 0.24682 0.00011162 0.04293 1.9415E-05 0.28975 0.00013104 452.2427099165188 33.465 0.59661 33.465 33.129 33.726 0 0.13239 -0.00014071 NaN 16.942 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4072900 + 47112 21014 31341 31361 0.015774882809068913 TSQSTAPIV 9 Unmodified _TSQSTAPIV_ 0 0 0 REV__ENST00000371897.8_1_9:136337013-136337103:-|nuORF REV__ENST00000371897.8_1_9:136337013-136337103:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 452.242732 902.470912 0.10263 4.6412E-05 0.22322 0.00010095 0.32585 0.00014736 452.2427659791613 35.602 0.65588 33.35 32.985 33.641 -2.2527 0.017071 2.2361E-05 NaN 16.942 46 18 3 NaN NaN NaN NaN 0 NaN NaN 0 10227000 + 47113 21014 31341 31361 0.015774882809068913 TSQSTAPIV 9 Unmodified _TSQSTAPIV_ 0 0 0 REV__ENST00000371897.8_1_9:136337013-136337103:-|nuORF REV__ENST00000371897.8_1_9:136337013-136337103:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 452.242732 902.470912 0.25851 0.00011691 -0.056053 -2.535E-05 0.20245 9.1559E-05 452.24263953473763 35.571 0.7748 33.294 32.895 33.67 -2.2766 -0.038427 -0.00023024 NaN 16.942 51 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6718100 + 47114 21014 31341 31361 0.015774882809068913 TSQVFLVW 8 Unmodified _TSQVFLVW_ 0 0 0 ENST00000558674.5_1_14:24567646-24569225:+|nuORF ENST00000558674.5_1_14:24567646-24569225:+|nuORF ENST00000558674.5_1_14:24567646-24569225:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2644348144531 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 54.24 1 54.24 53.74 54.74 0 0 0 0 0.21486 1 10341 10341 10.183 0 1 47115 11267 31342 31362 46338 46338 0.027349729028514957 TSRCRSDR 8 Unmodified _TSRCRSDR_ 0 0 0 ENST00000486627.1_1_1:1179521-1179833:-|nuORF;ENST00000330388.2_1_1:1178525-1179833:-|nuORF ENST00000486627.1_1_1:1179521-1179833:-|nuORF ENST00000486627.1_1_1:1179521-1179833:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2662048339844 2 490.738157 979.461761 -0.32539 -0.00015968 -0.98159 -0.0004817 -1.307 -0.00064139 490.7381283604153 47.58 0.96563 44.63 44.33 45.295 -2.9499 55 27 3 0 0 0 0.9455 1 8658 8658 11.64 11.64 1 4623100 47116 8767 31343 31363 46339 46339 -0.028791835564106805 TSRCVATSVY 10 Unmodified _TSRCVATSVY_ 0 0 0 REV__SPP2|p.F151Lfs*24|1|0.13|ENSG00000072080|chr2:234066537-234066537|T/-|frameshift_variant REV__SPP2|p.F151Lfs*24|1|0.13|ENSG00000072080|chr2:234066537-234066537|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7749633789062 2 543.766049 1085.51754 NaN NaN NaN NaN NaN NaN NaN 82.333 1 78.46 77.96 78.96 -3.8736 0 0 0 0.21103 1 15643 15643 26.268 4.5215 1 + 47117 14279 31344 31364 46340 46340 -0.021793951594645478 TSRFKQDPD 9 Unmodified _TSRFKQDPD_ 0 0 0 nc|ENSG00000168916|Q9ULD9-2|ZNF608;ZNF608|p.N1313Mfs*8|1|0.11|ENSG00000168916|chr5:124644429-124644429|T/-|frameshift_variant;ENSG00000168916|ENST00000513986|ZNF608 nc|ENSG00000168916|Q9ULD9-2|ZNF608 nc|ENSG00000168916|Q9ULD9-2|ZNF608 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7689208984375 2 547.26727 1092.51999 0.011935 6.5314E-06 0.15776 8.6335E-05 0.16969 9.2867E-05 547.2673030759396 46.1 0.93012 43.234 42.796 43.726 -2.8653 50 26 2 0 0 0 0.55979 1 8450 8450 15.847 1.0089 1 26864000 47118 5950 31345 31365 46341 46341 -0.022572234301378558 TSRFRKSY 8 Unmodified _TSRFRKSY_ 0 0 0 REV__nc|ENSG00000182022|Q7LFX5-2|CHST15 REV__nc|ENSG00000182022|Q7LFX5-2|CHST15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2781372070312 2 522.78289 1043.55123 -0.18296 -9.5649E-05 0.2786 0.00014565 0.095635 4.9996E-05 522.7830041931765 100.79 0.41048 96.627 96.427 96.837 -4.1594 18 11 2 0 0 0 0.98792 1 19789 19789 5.2307 3.1709 1 1444000 + 47119 18751 31346 31366 46342 46342 0.031193943946163927 TSRGPRASP 9 Unmodified _TSRGPRASP_ 0 0 0 ENSG00000171798|ENST00000304613|KNDC1;nc|ENSG00000171798|Q76NI1-4|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1697998046875 3 310.170152 927.488627 NaN NaN NaN NaN NaN NaN NaN 5.563 1 4.523 4.023 5.023 -1.04 0 0 0 0.23508 1 290 290 0.26902 0 1 47120 6171 31347 31367 46343 46343 0.021982483264082475 TSRGPRASP 9 Unmodified _TSRGPRASP_ 0 0 0 ENSG00000171798|ENST00000304613|KNDC1;nc|ENSG00000171798|Q76NI1-4|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16961669921875 3 310.170152 927.488627 NaN NaN NaN NaN NaN NaN NaN 6.449 1 5.4044 4.9044 5.9044 -1.0446 0 0 0 0.23508 1 441 441 0.26902 0 1 47121 6171 31347 31367 46344 46344 0.021982483264082475 TSRGVQNAS 9 Unmodified _TSRGVQNAS_ 0 0 0 nc|ENSG00000151065|Q8IZD4-2|DCP1B;ENST00000543381.5_1_12:2055374-2100299:-|nuORF;ENSG00000151065|ENST00000280665|DCP1B nc|ENSG00000151065|Q8IZD4-2|DCP1B nc|ENSG00000151065|Q8IZD4-2|DCP1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.243896484375 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 118.49 1 118.49 117.99 118.99 0 0 0 0 0.19692 1 23340 23340 1.2148 0.588 1 47122 4848 31348 31368 46345 46345 -0.010580482901559662 TSRIVLKKL 9 Unmodified _TSRIVLKKL_ 0 0 0 tr|U7SQK3|U7SQK3_FUSNUSirohydrochlorincobaltochelataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01667PE=4SV=1 tr|U7SQK3|U7SQK3_FUSNUSirohydrochlorincobaltochelataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01667PE=4SV=1 tr|U7SQK3|U7SQK3_FUSNUSirohydrochlorincobaltochelataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01667PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.2415771484375 3 353.241248 1056.70191 NaN NaN NaN NaN NaN NaN NaN 18.604 1 17.09 16.59 17.59 -1.5148 0 0 0 0.23508 1 2764 2764 2.2828 0 1 47123 26054 31349 31369 46346 46346 0.1758316105342601 TSRKAAAWTS 10 Unmodified _TSRKAAAWTS_ 0 0 0 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2014465332031 3 360.192845 1077.55671 0.21519 7.751E-05 0.18401 6.6279E-05 0.3992 0.00014379 360.19285995720935 64.718 0.5522 61.26 61.057 61.609 -3.4581 36 15 3 0 0 0 0.66283 2 12068 12068;12072 14.957 4.1332 1 3018900 47124 6174 31350 31370 46347;46348 46347 0.021030731864129848 TSRKAFGY 8 Unmodified _TSRKAFGY_ 0 0 0 KIAA2012|p.H307Y|1|0.08|ENSG00000182329|chr2:202099703-202099703|C/T|missense_variant KIAA2012|p.H307Y|1|0.08|ENSG00000182329|chr2:202099703-202099703|C/T|missense_variant KIAA2012|p.H307Y|1|0.08|ENSG00000182329|chr2:202099703-202099703|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2582702636719 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 24.084 1 22.55 22.05 23.05 -1.5342 0 0 0 0.21486 1 3910 3910 10.183 1.5901 1 47125 11996 31351 31371 46349 46349 0.009566315832330474 TSRKDILDP 9 Unmodified _TSRKDILDP_ 0 0 0 REV__ENSG00000105298|ENST00000429344|CACTIN REV__ENSG00000105298|ENST00000429344|CACTIN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2608642578125 2 522.787838 1043.56112 -0.36129 -0.00018888 0.46004 0.0002405 0.098743 5.1622E-05 522.788007701928 31.647 0.81186 29.621 29.093 29.905 -2.0264 34 22 2 0 0 0 0.74655 1 5440 5440 15.847 7.6917 1 797860 + 47126 14977 31352 31372 46350 46350 0.04108537609317864 TSRLQLQTP 9 Unmodified _TSRLQLQTP_ 0 0 0 ENSG00000146216|ENST00000259750|TTBK1 ENSG00000146216|ENST00000259750|TTBK1 ENSG00000146216|ENST00000259750|TTBK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2659912109375 2 522.29583 1042.57711 0.18162 9.486E-05 -0.19993 -0.00010442 -0.018309 -9.5629E-06 522.2956361637711 21.09 0.38436 19.616 19.385 19.769 -1.4742 16 10 2 0 0 0 0.86627 1 3504 3504 2.9952 0 1 723190 47127 4644 31353 31373 46351 46351 0.05752243846222882 TSRLTKIT 8 Unmodified _TSRLTKIT_ 0 0 0 nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2401123046875 2 460.282192 918.549831 NaN NaN NaN NaN NaN NaN NaN 109.84 1 105.39 104.89 105.89 -4.4518 0 0 0 0.23487 1 21079 21079 0.063987 0 1 47128 2815 31354 31374 46352 46352 0.08729760305834589 TSRNFIVASA 10 Unmodified _TSRNFIVASA_ 0 0 0 REV__ENST00000517832.1_1_8:99446484-99539107:-|nuORF REV__ENST00000517832.1_1_8:99446484-99539107:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.287109375 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 49.987 1 47.106 46.606 47.606 -2.8811 0 0 0 0.22585 1 9476 9476 13.615 4.0709 1 + 47129 22601 31355 31375 46353 46353 0.03175957329199264 TSRPRLVT 8 Unmodified _TSRPRLVT_ 0 0 0 ENST00000466620.5_1_20:3653963-3654391:-|nuORF ENST00000466620.5_1_20:3653963-3654391:-|nuORF ENST00000466620.5_1_20:3653963-3654391:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24163818359375 2 465.279983 928.545414 0.34886 0.00016232 -0.31125 -0.00014482 0.037609 1.7499E-05 465.27982281023884 34.769 0.42012 32.492 32.239 32.659 -2.2766 17 11 2 0 0 0 1.0147 1 6134 6134 2.3027 0 1 981420 47130 10135 31356 31376 46354 46354 0.07828295882939074 TSRQTSVTY 9 Unmodified _TSRQTSVTY_ 0 0 0 REV__ENSG00000160294|ENST00000291688|MCM3AP REV__ENSG00000160294|ENST00000291688|MCM3AP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26416015625 2 521.76182 1041.50909 0.21797 0.00011373 0.17208 8.9785E-05 0.39005 0.00020351 521.7618272742092 35.307 0.59149 35.307 34.995 35.586 0 25 16 2 0 0 0 0.34411 1 6510 6510 29.082 0 1 2150300 + 47131 17413 31357 31377 46355 46355 -0.01000625804408628 TSRQTSVTY 9 Unmodified _TSRQTSVTY_ 0 0 0 REV__ENSG00000160294|ENST00000291688|MCM3AP REV__ENSG00000160294|ENST00000291688|MCM3AP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.263427734375 2 521.76182 1041.50909 -0.63739 -0.00033256 1.0761 0.00056145 0.43867 0.00022888 521.7623230661377 37.632 0.5504 35.284 35.028 35.578 -2.3479 36 15 3 0 0 0 0.25183 1 6698 6698 34.402 1.616 1 2748600 + 47132 17413 31357 31377 46356 46356 -0.01000625804408628 TSRQVQVL 8 Unmodified _TSRQVQVL_ 0 0 0 CPB2|p.K66Nfs*7|1|0.43|ENSG00000080618|chr13:46084296-46084296|T/-|frameshift_variant;CPB2|p.F71Lfs*2|1|0.25|ENSG00000080618|chr13:46084281-46084281|A/-|frameshift_variant;CPB2|p.V72Cfs*5|2|0.19|ENSG00000080618|chr13:46084280-46084281|-/A|frameshift_variant;CPB2|p.R114Efs*13|1|0.18|ENSG00000080618|chr13:46082485-46082485|G/-|frameshift_variant;nc|ENSG00000080618|Q96IY4-2|CPB2;ENSG00000080618|ENST00000181383|CPB2 CPB2|p.K66Nfs*7|1|0.43|ENSG00000080618|chr13:46084296-46084296|T/-|frameshift_variant CPB2|p.K66Nfs*7|1|0.43|ENSG00000080618|chr13:46084296-46084296|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24127197265625 2 465.771991 929.529429 -0.18547 -8.6387E-05 -0.42638 -0.0001986 -0.61185 -0.00028498 465.7716730254037 59.979 0.35176 59.979 59.75 60.102 0 12 9 2 0 0 0 0.91917 1 11458 11458 14.838 14.838 1 588780 47133 715 31358 31378 46357 46357 0.06184589646045424 TSRRKNAPD 9 Unmodified _TSRRKNAPD_ 0 0 0 REV__IL1R1|p.N283D|1|0.29|ENSG00000115594|chr2:102172694-102172694|A/G|missense_variant REV__IL1R1|p.N283D|1|0.29|ENSG00000115594|chr2:102172694-102172694|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2583618164062 2 522.780879 1043.5472 -0.25361 -0.00013258 3.5994 0.0018817 3.3458 0.0017491 523.283673493597 47.209 0.10547 44.34 44.251 44.357 -2.869 4 2 2 0 0 0 0.87258 1 8902 8902 0.45834 0 1 890280 + 47134 23654 31359 31379 46358 46358 0.027173049008979433 TSRRRTKK 8 Unmodified _TSRRRTKK_ 0 0 0 REV__nc|ENSG00000107262|Q99933-3|BAG1 REV__nc|ENSG00000107262|Q99933-3|BAG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.8535461425781 3 344.884346 1031.63121 NaN NaN NaN NaN NaN NaN NaN 13.895 1 13.895 13.395 14.395 0 0 0 0 0.23899 1 2037 2037 0.063987 0 1 + 47135 13174 31360 31380 46359 46359 0.11665880788450522 TSRRRTKK 8 Unmodified _TSRRRTKK_ 0 0 0 REV__nc|ENSG00000107262|Q99933-3|BAG1 REV__nc|ENSG00000107262|Q99933-3|BAG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.8778076171875 3 344.884346 1031.63121 NaN NaN NaN NaN NaN NaN NaN 18.83 1 18.83 18.33 19.33 0 0 0 0 0.21486 1 3050 3050 1.3295 0.25807 1 + 47136 13174 31360 31380 46360 46360 0.11665880788450522 TSRRRTKK 8 Unmodified _TSRRRTKK_ 0 0 0 REV__nc|ENSG00000107262|Q99933-3|BAG1 REV__nc|ENSG00000107262|Q99933-3|BAG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.8899841308594 3 344.884346 1031.63121 NaN NaN NaN NaN NaN NaN NaN 19.499 1 19.499 18.999 19.999 0 0 0 0 0.21486 1 3190 3190 0.30703 0 1 + 47137 13174 31360 31380 46361 46361 0.11665880788450522 TSSAGGQLLAG 11 Unmodified _TSSAGGQLLAG_ 0 0 0 ENST00000273038.7_1_3:11598948-11599056:-|nuORF ENST00000273038.7_1_3:11598948-11599056:-|nuORF ENST00000273038.7_1_3:11598948-11599056:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2489013671875 2 481.251089 960.487624 0.039845 1.9176E-05 -1.0501 -0.00050534 -1.0102 -0.00048616 481.25035063824083 40.179 3.2237 37.689 36.181 39.405 -2.4896 167 91 4 0 0 0 0.45265 1 7502 7502 0.03141 0.0021271 1 69706000 47138 8414 31361 31381 46362 46362 0.005799891668516466 TSSAVHKW 8 Unmodified _TSSAVHKW_ 0 0 0 USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant;ENSG00000162402|ENST00000294383|USP24;USP24|p.I478Ffs*12|1|0.09|ENSG00000162402|chr1:55156962-55156962|T/-|frameshift_variant;USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant;USP24|p.F796Lfs*4|1|0.37|ENSG00000162402|chr1:55144178-55144178|A/-|frameshift_variant USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22552490234375 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 51.085 1 51.085 50.585 51.585 0 0 0 0 0.21486 1 9684 9684 9.3474 0 1 47139 5329 31362 31382 46363 46363 0.00036345066178000707 TSSAVTPVAP 10 Unmodified _TSSAVTPVAP_ 0 0 0 REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25048828125 2 465.250557 928.486562 0.41222 0.00019178 0.38683 0.00017997 0.79904 0.00037176 465.2505814186107 33.379 0.51292 31.163 30.84 31.353 -2.2158 22 14 2 0 0 0 0.37773 1 5834 5834 32.305 0 1 735090 + 47140 18462 31363 31383 46364 46364 0.01945774797957256 TSSDDWKEN 9 Unmodified _TSSDDWKEN_ 0 0 0 REV__ENST00000586645.5_1_19:19868918-19869302:-|nuORF REV__ENST00000586645.5_1_19:19868918-19869302:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2694702148438 2 541.225268 1080.43598 0.29166 0.00015785 1.2471 0.00067498 1.5388 0.00083283 541.2257640901988 113.41 0.97533 113.41 112.97 113.94 0 75 27 4 0 0 0 0.44468 1 22402 22402 1.2148 0 1 14369000 + 47141 23266 31364 31384 46365 46365 -0.10101799317703808 TSSFDDEY 8 Unmodified _TSSFDDEY_ 0 0 0 REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.774658203125 2 482.182537 962.350522 -0.15662 -7.552E-05 0.89135 0.00042979 0.73473 0.00035427 482.1832421805272 109.72 0.71127 105.27 104.91 105.63 -4.4518 52 19 4 0 0 0 0.88646 1 21053 21053 3.5871 1.8448 1 9010800 + 47142 15888 31365 31385 46366 46366 -0.13215964503376654 TSSFPPQSPP 10 Unmodified _TSSFPPQSPP_ 0 0 0 REV__PRR30|p.L44F|1|0.28|ENSG00000186143|chr2:27138200-27138200|G/A|missense_variant REV__PRR30|p.L44F|1|0.28|ENSG00000186143|chr2:27138200-27138200|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.267822265625 2 522.753464 1043.49238 0.23325 0.00012193 0.84181 0.00044006 1.0751 0.00056199 522.7540277451554 21.303 0.28 19.829 19.632 19.912 -1.4742 13 7 2 0 0 0 0.89521 1 3579 3579 6.7232 0.99131 1 911010 + 47143 19016 31366 31386 46367 46367 -0.027631266903881624 TSSGHSGS 8 Unmodified _TSSGHSGS_ 0 0 0 REV__CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant REV__CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2137756347656 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 14.729 1 13.556 13.056 14.056 -1.173 0 0 0 0.21486 1 2013 2013 0.69038 0 1 + 47144 13440 31367 31387 46368 46368 -0.0822164606104252 TSSGHSGS 8 Unmodified _TSSGHSGS_ 0 0 0 REV__CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant REV__CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2140197753906 2 360.151375 718.288196 NaN NaN NaN NaN NaN NaN NaN 11.998 1 10.877 10.377 11.377 -1.1206 0 0 0 0.21486 1 1402 1402 0.69038 0 1 + 47145 13440 31367 31387 46369 46369 -0.0822164606104252 TSSGKAAK 8 Unmodified _TSSGKAAK_ 0 0 0 ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2105407714844 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 69.522 1 66.342 65.842 66.842 -3.1796 0 0 0 0.2396 1 13516 13516 0 0 1 47146 6120 31368 31388 46370 46370 0.02364967283506303 TSSGSCHA 8 Unmodified _TSSGSCHA_ 0 0 0 ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C;RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant ENSG00000275793|ENST00000619918|RIMBP3 ENSG00000275793|ENST00000619918|RIMBP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.212890625 2 375.147778 748.281002 NaN NaN NaN NaN NaN NaN NaN 48.187 1 45.237 44.737 45.737 -2.9499 0 0 0 0.2396 1 8816 8816 0.30703 0 1 47147 6836 31369 31389 46371 46371 -0.10320701933130749 TSSGSSYLK 9 Unmodified _TSSGSSYLK_ 0 0 0 REV__ENSG00000105738|ENST00000222345|SIPA1L3 REV__ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2486267089844 2 465.232364 928.450176 -0.098086 -4.5633E-05 -0.35489 -0.00016511 -0.45297 -0.00021074 465.232136197706 79.533 1.0482 75.729 75.128 76.176 -3.8048 43 29 2 0 0 0 0.41081 1 15155 15155 0.37959 0 1 1501600 + 47148 15015 31370 31390 46372 46372 -0.01691102098754982 TSSGSSYLK 9 Unmodified _TSSGSSYLK_ 0 0 0 REV__ENSG00000105738|ENST00000222345|SIPA1L3 REV__ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2523193359375 2 465.232364 928.450176 -0.074501 -3.466E-05 -0.13251 -6.1648E-05 -0.20701 -9.6309E-05 465.2322192041717 79.25 1.0153 75.574 75.096 76.111 -3.676 48 28 3 0 0 0 0.41081 1 15193 15193 0.87518 0 1 1633000 + 47149 15015 31370 31390 46373 46373 -0.01691102098754982 TSSIMVLV 8 Unmodified _TSSIMVLV_ 0 0 0 nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1 nc|ENSG00000018280|P49279-2|SLC11A1 nc|ENSG00000018280|P49279-2|SLC11A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2414245605469 2 425.241147 848.46774 NaN NaN NaN NaN NaN NaN NaN 134.5 1 129.63 129.13 130.13 -4.8726 0 0 0 0.22934 1 25838 25838 3.5871 2.9602 1 47150 1117 31371 31391 46374 46374 0.03744521902547149 TSSIRRTK 8 Unmodified _TSSIRRTK_ 0 0 0 REV__ENST00000467294.1_1_3:50386114-50386411:-|nuORF REV__ENST00000467294.1_1_3:50386114-50386411:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.85626220703125 3 316.857686 947.551228 NaN NaN NaN NaN NaN NaN NaN 9.1492 1 9.1492 8.6492 9.6492 0 0 0 0 0.21486 1 1027 1027 0 0 1 + 47151 21978 31372 31392 46375 46375 0.07535394394597006 TSSITCVRL 9 Unmodified _TSSITCVRL_ 0 0 0 REV__PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant REV__PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2656555175781 2 490.265684 978.516816 NaN NaN NaN NaN NaN NaN NaN 122.93 1 118.34 117.84 118.84 -4.5926 0 0 0 0.19674 1 23663 23663 0.40827 0.2854 1 + 47152 15086 31373 31393 46376 46376 0.02669810191491706 TSSNEMGTVRY 11 Unmodified _TSSNEMGTVRY_ 0 0 0 CLIP4|p.N665Mfs*20|1|0.1|ENSG00000115295|chr2:29181764-29181764|A/-|frameshift_variant;ENSG00000115295|ENST00000320081|CLIP4 CLIP4|p.N665Mfs*20|1|0.1|ENSG00000115295|chr2:29181764-29181764|A/-|frameshift_variant CLIP4|p.N665Mfs*20|1|0.1|ENSG00000115295|chr2:29181764-29181764|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7815551757812 2 622.782427 1243.5503 NaN NaN NaN NaN NaN NaN NaN 54.756 1 51.621 51.121 52.121 -3.1352 0 0 0 0.17134 1 10112 10112 24.882 10.476 1 47153 578 31374 31394 46377 46377 -0.06173232827245556 TSSPGIKSP 9 Unmodified _TSSPGIKSP_ 0 0 0 HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1;HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23626708984375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 103.73 1 99.382 98.882 99.882 -4.346 0 0 0 0.23508 1 19868 19868 11.64 2.2929 1 47154 6229 31375 31395 46378 46378 0.019015056264720442 TSSRLIRK 8 Unmodified _TSSRLIRK_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2441711425781 2 480.801083 959.587613 -0.0080674 -3.8788E-06 0.32618 0.00015683 0.31811 0.00015295 480.8011229832304 155.13 0.94371 155.13 154.71 155.66 0 65 26 3 0 0 0 8448 1 31150 31150 0.62683 0 1 23163000 47155 2423 31376 31396 46379 46379 0.10620271291338668 TSSSSFQY 8 Unmodified _TSSSSFQY_ 0 0 0 ENSG00000171564|ENST00000302068|FGB ENSG00000171564|ENST00000302068|FGB ENSG00000171564|ENST00000302068|FGB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7522277832031 2 453.695615 905.376677 NaN NaN NaN NaN NaN NaN NaN 37.727 1 35.389 34.889 35.889 -2.3375 0 0 0 0.21486 1 6686 6686 5.7604 0 1 47156 6154 31377 31397 46380 46380 -0.07979650541233241 TSSTSPAIY 9 Unmodified _TSSTSPAIY_ 0 0 0 REV__nc|ENSG00000196323|Q8NCP5-3|ZBTB44 REV__nc|ENSG00000196323|Q8NCP5-3|ZBTB44 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 464.15234375 2 463.726915 925.439277 0.30378 0.00014087 -3.8825 -0.0018004 -3.5787 -0.0016595 463.7267114472372 29.503 0.56156 27.611 27.332 27.893 -1.8928 36 15 3 0 0 0 0.8319 1 4988 4988 7.9102 2.6795 1 2718000 + 47157 19233 31378 31398 46381 46381 -0.02642504473055851 TSSTSPAIY 9 Unmodified _TSSTSPAIY_ 0 0 0 REV__nc|ENSG00000196323|Q8NCP5-3|ZBTB44 REV__nc|ENSG00000196323|Q8NCP5-3|ZBTB44 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 463.726915 925.439277 0.20488 9.5007E-05 -3.4462 -0.0015981 -3.2413 -0.0015031 463.726765482911 27.843 0.72411 27.843 27.528 28.252 0 0.2169 0.00018238 NaN 7.9102 44 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2547800 + 47158 19233 31378 31398 -0.02642504473055851 TSSTSPAIY 9 Unmodified _TSSTSPAIY_ 0 0 0 REV__nc|ENSG00000196323|Q8NCP5-3|ZBTB44 REV__nc|ENSG00000196323|Q8NCP5-3|ZBTB44 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 463.726915 925.439277 0.50013 0.00023192 -3.6448 -0.0016902 -3.1447 -0.0014583 463.72657334194787 29.625 0.48664 27.551 27.309 27.796 -2.0743 -0.075873 -1.7897E-06 NaN 7.9102 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1384100 + 47159 19233 31378 31398 -0.02642504473055851 TSSVRKRS 8 Unmodified _TSSVRKRS_ 0 0 0 ENST00000566045.5_1_16:53529153-53534189:-|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF;AKTIP|p.D205Ifs*26|1|0.32|ENSG00000166971|chr16:53494236-53494236|T/-|frameshift_variant;ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP ENST00000566045.5_1_16:53529153-53534189:-|nuORF ENST00000566045.5_1_16:53529153-53534189:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2330322265625 2 460.76724 919.519927 -0.050939 -2.3471E-05 0.71177 0.00032796 0.66084 0.00030449 460.7680190979641 61.451 0.20351 58.49 58.377 58.58 -2.9614 9 5 2 0 0 0 0.99494 1 11842 11842 8.5933 0.68312 1 522380 47160 116 31379 31399 46382 46382 0.056948213605210185 TSSVSPGSPP 10 Unmodified _TSSVSPGSPP_ 0 0 0 ENSG00000205517|ENST00000380456|RGL3 ENSG00000205517|ENST00000380456|RGL3 ENSG00000205517|ENST00000380456|RGL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2234802246094 2 458.224539 914.434526 -0.010362 -4.7479E-06 -0.062834 -2.8792E-05 -0.073196 -3.354E-05 458.2244716194021 32.861 0.76582 30.63 30.331 31.096 -2.2305 33 21 2 0 0 0 0.51199 1 5960 5960 24.021 1.2843 1 1958500 47161 7647 31380 31400 46383 46383 -0.0261138861579866 TSSYLIVH 8 Unmodified _TSSYLIVH_ 0 0 0 ENSG00000214029|ENST00000537226|ZNF891 ENSG00000214029|ENST00000537226|ZNF891 ENSG00000214029|ENST00000537226|ZNF891 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2478332519531 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 6.7117 1 5.6671 5.1671 6.1671 -1.0446 0 0 0 0.21486 1 493 493 0.79363 0 1 47162 7718 31381 31401 46384 46384 0.018580960061512997 TSTAIFWGP 9 Unmodified _TSTAIFWGP_ 0 0 0 REV__nc|ENSG00000136696|Q9NZH7-2|IL36B REV__nc|ENSG00000136696|Q9NZH7-2|IL36B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2744140625 2 490.247818 978.481082 0.31873 0.00015625 -1.9203 -0.00094144 -1.6016 -0.00078518 490.24717746920174 39.392 0.24387 39.392 39.201 39.445 0 10 6 2 0 0 0 0.77732 1 7312 7312 18.135 6.4947 1 452360 + 47163 24053 31382 31402 46385 46385 -0.00901903993860742 TSTALPRTTP 10 Unmodified _TSTALPRTTP_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2645874023438 2 522.787838 1043.56112 0.23026 0.00012038 -0.19826 -0.00010365 0.032001 1.673E-05 522.7875823070499 29.54 0.76043 29.54 29.195 29.955 0 30 21 2 0 0 0 0.85084 1 5266 5266 14.405 2.1647 1 753640 47164 6711 31383 31403 46386 46386 0.04108537609317864 TSTARPEPG 9 Unmodified _TSTARPEPG_ 0 0 0 REV__ENST00000402886.7_1_6:35444208-35454475:-|nuORF REV__ENST00000402886.7_1_6:35444208-35454475:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22991943359375 2 458.230156 914.445759 -1.0686 -0.00048965 1.349 0.00061817 0.28046 0.00012851 458.2306839667985 19.113 0.34463 17.478 17.254 17.598 -1.6351 14 9 2 0 0 0 0.48644 1 2887 2887 20.454 2.3073 1 259660 + 47165 21365 31384 31404 46387 46387 -0.0148856652166387 TSTENYHK 8 Unmodified _TSTENYHK_ 0 0 0 REV__EXPH5|p.N268T|1|0.07|ENSG00000110723|chr11:108514704-108514704|T/G|missense_variant REV__EXPH5|p.N268T|1|0.07|ENSG00000110723|chr11:108514704-108514704|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.256103515625 2 490.227613 978.440674 0.78743 0.00038602 -1.0361 -0.00050791 -0.24863 -0.00012189 490.22713403503593 29.217 0.70103 27.261 26.774 27.475 -1.9561 28 19 2 0 0 0 0.96284 1 5222 5222 13.508 5.5977 1 546190 + 47166 23508 31385 31405 46388 46388 -0.04940870384291429 TSTEQSLY 8 Unmodified _TSTEQSLY_ 0 0 0 nc|ENSG00000196208|Q4ZG55-4|GREB1;ENSG00000196208|ENST00000381486|GREB1 nc|ENSG00000196208|Q4ZG55-4|GREB1 nc|ENSG00000196208|Q4ZG55-4|GREB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.239990234375 2 464.716547 927.418542 0.24896 0.0001157 -0.0094339 -4.3841E-06 0.23953 0.00011131 464.7164365465122 36.919 0.70401 34.582 34.312 35.016 -2.3375 42 19 3 0 0 0 0.99494 1 6511 6511 4.756 0 1 1577800 47167 7245 31386 31406 46389 46389 -0.0480709485270836 TSTFQTQSPP 10 Unmodified _TSTFQTQSPP_ 0 0 0 nc|ENSG00000119977|Q6NUS6-4|TCTN3;nc|ENSG00000119977|Q6NUS6-3|TCTN3;nc|ENSG00000119977|Q6NUS6-2|TCTN3;ENSG00000119977|ENST00000371217|TCTN3 nc|ENSG00000119977|Q6NUS6-4|TCTN3 nc|ENSG00000119977|Q6NUS6-4|TCTN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7900390625 2 547.261653 1092.50875 0.2094 0.0001146 0.026962 1.4755E-05 0.23636 0.00012935 547.2615437025025 27.006 0.34883 25.371 25.178 25.527 -1.6347 16 9 3 0 0 0 0.61964 1 4480 4480 18.146 0 1 4966500 47168 3111 31387 31407 46390 46390 -0.03380045524272646 TSTGAAIHGT 10 Unmodified _TSTGAAIHGT_ 0 0 0 REV__ENSG00000038002|ENST00000264595|AGA REV__ENSG00000038002|ENST00000264595|AGA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22998046875 2 458.230156 914.445759 -0.052774 -2.4183E-05 0.29113 0.00013341 0.23836 0.00010922 458.2301901451368 18.961 0.40786 17.65 17.454 17.862 -1.3109 16 11 2 0 0 0 0.61964 1 3136 3136 18.146 3.3081 1 303190 + 47169 14036 31388 31408 46391 46391 -0.0148856652166387 TSTHFCAS 8 Unmodified _TSTHFCAS_ 0 0 0 GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant;GPR156|p.L789Wfs*15|1|0.18|ENSG00000175697|chr3:120167113-120167113|C/-|frameshift_variant;nc|ENSG00000175697|Q8NFN8-2|GPR156;ENSG00000175697|ENST00000464295|GPR156;GPR156|p.V264Sfs*13|1|0.43|ENSG00000175697|chr3:120181268-120181268|C/-|frameshift_variant;GPR156|p.V264Gfs*56|1|0.31|ENSG00000175697|chr3:120181267-120181268|-/C|frameshift_variant GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.14105224609375 2 427.179078 852.343602 NaN NaN NaN NaN NaN NaN NaN 56.582 1 53.688 53.188 54.188 -2.8944 0 0 0 0.21486 1 10845 10845 8.5933 1.8701 1 47170 6427 31389 31409 46392 46392 -0.0884755586492929 TSTHIQRN 8 Unmodified _TSTHIQRN_ 0 0 0 REV__L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|17|2|sense REV__L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|17|2|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.728759765625 2 478.749047 955.483542 NaN NaN NaN NaN NaN NaN NaN 23.592 1 22.038 21.538 22.538 -1.5532 0 0 0 0.21486 1 4077 4077 12.532 0.89125 1 + 47171 23748 31390 31410 46393 46393 0.004019444638174718 TSTHNDIK 8 Unmodified _TSTHNDIK_ 0 0 0 REV__FGD4|p.G57Efs*23|1|0.05|ENSG00000139132|chr12:32582036-32582037|-/AAAA|frameshift_variant REV__FGD4|p.G57Efs*23|1|0.05|ENSG00000139132|chr12:32582036-32582037|-/AAAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2320861816406 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 51.205 1 51.205 50.705 51.705 0 0 0 0 0.21292 1 9708 9708 14.838 0.25658 1 + 47172 23535 31391 31411 46394 46394 -0.014885665216752386 TSTKYWRIR 9 Unmodified _TSTKYWRIR_ 0 0 0 tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1 tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1 tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 605.857421875 2 605.838197 1209.66184 NaN NaN NaN NaN NaN NaN NaN 10.931 1 10.931 10.431 11.431 0 0 0 0 0.23508 1 1408 1408 0 0 1 47173 26261 31392 31412 46395 46395 0.0653961438283659 TSTPFIRSA 9 Unmodified _TSTPFIRSA_ 0 0 0 REV__SSH3|p.H335Tfs*25|1|0.12|ENSG00000172830|chr11:67308287-67308287|C/-|frameshift_variant REV__SSH3|p.H335Tfs*25|1|0.12|ENSG00000172830|chr11:67308287-67308287|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26702880859375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 57.796 1 54.591 54.091 55.091 -3.2052 0 0 0 0.22251 1 10773 10773 16.942 1.0951 1 + 47174 24739 31393 31413 46396 46396 0.023328834091330464 TSTQSYRSL 9 Unmodified _TSTQSYRSL_ 0 0 0 REV__ENSG00000155858|ENST00000286307|LSM11 REV__ENSG00000155858|ENST00000286307|LSM11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.264892578125 2 521.76182 1041.50909 0.13598 7.0948E-05 2.927 0.0015272 3.0629 0.0015981 521.763764114007 98.151 0.17355 94.195 94.093 94.267 -3.9564 8 4 3 0 0 0 0.19983 1 18845 18845 0.87518 0.46691 1 725080 + 47175 17229 31394 31414 46397 46397 -0.01000625804408628 TSTRLQPQ 8 Unmodified _TSTRLQPQ_ 0 0 0 nc|ENSG00000170983|Q96KT6|LINC00208 nc|ENSG00000170983|Q96KT6|LINC00208 nc|ENSG00000170983|Q96KT6|LINC00208 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2592468261719 2 465.753798 929.493044 0.16205 7.5474E-05 -1.7098 -0.00079636 -1.5478 -0.00072089 465.7531427106365 28.338 0.27593 28.338 28.215 28.491 0 13 7 3 0 0 0 0.97173 1 5056 5056 1.8442 0 1 578090 47176 12459 31395 31415 46398 46398 0.025477127493331864 TSTTSSKKKK 10 Unmodified _TSTTSSKKKK_ 0 0 0 REV__nc|ENSG00000151332|Q9NS73-3|MBIP REV__nc|ENSG00000151332|Q9NS73-3|MBIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.860595703125 3 365.883789 1094.62954 NaN NaN NaN NaN NaN NaN NaN 9.5764 1 8.7822 8.2822 9.2822 -0.79424 0 0 0 0.22588 1 1118 1118 0 0 1 + 47177 24098 31396 31416 46399 46399 0.0860078218918261 TSTTSSKKKK 10 Unmodified _TSTTSSKKKK_ 0 0 0 REV__nc|ENSG00000151332|Q9NS73-3|MBIP REV__nc|ENSG00000151332|Q9NS73-3|MBIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.8676452636719 3 365.883789 1094.62954 NaN NaN NaN NaN NaN NaN NaN 9.6687 1 8.8745 8.3745 9.3745 -0.79424 0 0 0 0.22588 1 1138 1138 0 0 1 + 47178 24098 31396 31416 46400 46400 0.0860078218918261 TSVDRVSGV 9 Unmodified _TSVDRVSGV_ 0 0 0 REV__nc|ENSG00000084112|Q8WYL5-5|SSH1 REV__nc|ENSG00000084112|Q8WYL5-5|SSH1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2470397949219 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 34.899 1 32.647 32.147 33.147 -2.2527 0 0 0 0.21469 1 6130 6130 19.257 0 1 + 47179 23958 31397 31417 46401 46401 0.014560065124328503 TSVDTVTKE 9 Unmodified _TSVDTVTKE_ 0 0 0 REV__nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2 REV__nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2524108886719 2 490.250754 978.486955 NaN NaN NaN NaN NaN NaN NaN 26.655 1 24.873 24.373 25.373 -1.7821 0 0 0 0.23508 1 4711 4711 10.824 0.64053 1 + 47180 24111 31398 31418 46402 46402 -0.003148502728549829 TSVEMLPGK 9 Unmodified _TSVEMLPGK_ 0 0 0 ENSG00000129315|ENST00000261900|CCNT1;CCNT1|p.N322S|1|0.18|ENSG00000129315|chr12:48694249-48694249|T/C|missense_variant ENSG00000129315|ENST00000261900|CCNT1 ENSG00000129315|ENST00000261900|CCNT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.765380859375 2 481.254785 960.495018 -0.12099 -5.8229E-05 0.54791 0.00026368 0.42692 0.00020546 481.25499327573965 56.283 0.48399 53.388 53.166 53.65 -2.8944 21 13 2 0 0 0 0.42844 1 10806 10806 24.021 0.87215 1 4562100 47181 3561 31399 31419 46403 46403 0.013190054429401243 TSVEMLPGK 9 Unmodified _TSVEMLPGK_ 0 0 0 ENSG00000129315|ENST00000261900|CCNT1;CCNT1|p.N322S|1|0.18|ENSG00000129315|chr12:48694249-48694249|T/C|missense_variant ENSG00000129315|ENST00000261900|CCNT1 ENSG00000129315|ENST00000261900|CCNT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2547912597656 2 481.254785 960.495018 0.097034 4.6698E-05 0.62508 0.00030082 0.72211 0.00034752 481.2549565406857 56.552 0.42427 53.363 53.194 53.618 -3.1895 21 11 2 0 0 0 0.34411 1 10473 10473 29.082 0.59474 1 3122000 47182 3561 31399 31419 46404 46404 0.013190054429401243 TSVEMLPGK 9 Unmodified _TSVEMLPGK_ 0 0 0 ENSG00000129315|ENST00000261900|CCNT1;CCNT1|p.N322S|1|0.18|ENSG00000129315|chr12:48694249-48694249|T/C|missense_variant ENSG00000129315|ENST00000261900|CCNT1 ENSG00000129315|ENST00000261900|CCNT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7652587890625 2 481.254785 960.495018 -0.038298 -1.8431E-05 0.56838 0.00027354 0.53009 0.00025511 481.2550258070866 56.583 0.56422 53.407 53.187 53.751 -3.1761 22 15 2 0 0 0 0.48644 1 10574 10574 20.454 5.6154 1 2399300 47183 3561 31399 31419 46405 46405 0.013190054429401243 TSVHIVPP 8 Unmodified _TSVHIVPP_ 0 0 0 ENST00000436587.6_1_7:7278335-7278389:+|nuORF ENST00000436587.6_1_7:7278335-7278389:+|nuORF ENST00000436587.6_1_7:7278335-7278389:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2461853027344 2 425.245078 848.475603 NaN NaN NaN NaN NaN NaN NaN 35.87 1 33.476 32.976 33.976 -2.3938 0 0 0 0.21486 1 6614 6614 9.3474 3.587 1 47184 9841 31400 31420 46406 46406 0.04530417214334648 TSVKTEFPA 9 Unmodified _TSVKTEFPA_ 0 0 0 REV__nc|ENSG00000121446|A5PLK6-6|RGSL1 REV__nc|ENSG00000121446|A5PLK6-6|RGSL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26849365234375 2 490.258382 978.502212 0.077007 3.7753E-05 0.18794 9.2141E-05 0.26495 0.00012989 490.25839915883455 107.09 0.8261 102.68 102.27 103.09 -4.4121 53 23 3 0 0 0 0.30833 1 20469 20469 4.7159 1.1232 1 2844600 + 47185 15660 31401 31421 46407 46407 0.012100613149982564 TSVMNVAK 8 Unmodified _TSVMNVAK_ 0 0 0 ENST00000396403.8_1_19:53994954-53995710:+|nuORF ENST00000396403.8_1_19:53994954-53995710:+|nuORF ENST00000396403.8_1_19:53994954-53995710:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2416687011719 2 425.228571 848.442588 NaN NaN NaN NaN NaN NaN NaN 60.646 1 57.332 56.832 57.832 -3.3139 0 0 0 0.21486 1 11296 11296 8.5933 0 1 47186 9443 31402 31422 46408 46408 0.01230467099969701 TSVPPGFKVF 10 Unmodified _TSVPPGFKVF_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;NPLOC4|p.F249Lfs*88|1|0.11|ENSG00000182446|chr17:81604635-81604635|A/-|frameshift_variant;ENST00000570300.1_1_17:79575918-79596804:-|nuORF ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20098876953125 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 74.923 1 71.22 70.72 71.72 -3.7026 0 0 0 0.22588 1 14167 14167 6.1918 0.89496 1 47187 6789 31403 31423 46409 46409 0.05019217482708882 TSVPTSVQGP 10 Unmodified _TSVPTSVQGP_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-4|WNK1 REV__nc|ENSG00000060237|Q9H4A3-4|WNK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 486.7550964355469 2 486.753464 971.492375 NaN NaN NaN NaN NaN NaN NaN 20.619 1 19.222 18.722 19.722 -1.3966 0 0 0 0.22588 1 3453 3453 6.2058 0.97511 1 + 47188 14142 31404 31424 46410 46410 0.005488733096171927 TSVQKQSIPV 10 Unmodified _TSVQKQSIPV_ 0 0 0 nc|ENSG00000125485|Q9H8H2-6|DDX31;nc|ENSG00000125485|Q9H8H2-3|DDX31;nc|ENSG00000125485|Q9H8H2-4|DDX31;ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31 nc|ENSG00000125485|Q9H8H2-6|DDX31 nc|ENSG00000125485|Q9H8H2-6|DDX31 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.790283203125 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 134.19 1 129.31 128.81 129.81 -4.8726 0 0 0 2.8426 1 25778 25778 0.51642 0 1 47189 3364 31405 31425 46411 46411 0.06869397160448898 TSVRPKKTT 9 Unmodified _TSVRPKKTT_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 339.8642883300781 3 339.873224 1016.59784 NaN NaN NaN NaN NaN NaN NaN 60.79 1 57.857 57.357 58.357 -2.9333 0 0 0 0.19634 1 11705 11705 0.029283 0 1 + 47190 18352 31406 31426 46412 46412 0.09020834225896124 TSVSAIAT 8 Unmodified _TSVSAIAT_ 0 0 0 REV__ENSG00000133962|ENST00000256343|CATSPERB REV__ENSG00000133962|ENST00000256343|CATSPERB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2048645019531 2 375.205618 748.396684 NaN NaN NaN NaN NaN NaN NaN 58.954 1 56.044 55.544 56.544 -2.9105 0 0 0 0.21486 1 11325 11325 12.532 3.9383 1 + 47191 16185 31407 31427 46413 46413 0.01242145189371513 TSVSGKGN 8 Unmodified _TSVSGKGN_ 0 0 0 REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1 REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2123107910156 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 48.137 1 48.137 47.637 48.637 0 0 0 0 0.23782 1 9083 9083 0.12286 0 1 + 47192 25108 31408 31428 46414 46414 -0.012719096131945662 TSVSGKGN 8 Unmodified _TSVSGKGN_ 0 0 0 REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1 REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21246337890625 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 48.381 1 48.381 47.881 48.881 0 0 0 0 0.23782 1 9136 9136 0.12286 0 1 + 47193 25108 31408 31428 46415 46415 -0.012719096131945662 TSVSGKGN 8 Unmodified _TSVSGKGN_ 0 0 0 REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1 REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21844482421875 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 50.96 1 47.914 47.414 48.414 -3.0453 0 0 0 0.23782 1 9346 9346 0.12286 0 1 + 47194 25108 31408 31428 46416 46416 -0.012719096131945662 TSVSGKGN 8 Unmodified _TSVSGKGN_ 0 0 0 REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1 REV__tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2124938964844 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 50.799 1 47.747 47.247 48.247 -3.0517 0 0 0 0.23749 1 9344 9344 0.0082765 0 1 + 47195 25108 31408 31428 46417 46417 -0.012719096131945662 TSVYLHFL 8 Unmodified _TSVYLHFL_ 0 0 0 REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant REV__ADARB2|p.C490Vfs*61|1|0.3|ENSG00000185736|chr10:1233740-1233740|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2662048339844 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 54.954 1 54.954 54.454 55.454 0 0 0 0 0.2074 1 10481 10481 19.439 2.4967 1 + 47196 12951 31409 31429 46418 46418 0.02734972902840127 TSWDCSVGPD 10 Unmodified _TSWDCSVGPD_ 0 0 0 ETV2|p.R314Efs*14|1|0.33|ENSG00000105672|chr19:35644757-35644757|G/-|frameshift_variant;ENSG00000105672|ENST00000402764|ETV2;nc|ENSG00000105672|O00321-2|ETV2 ETV2|p.R314Efs*14|1|0.33|ENSG00000105672|chr19:35644757-35644757|G/-|frameshift_variant ETV2|p.R314Efs*14|1|0.33|ENSG00000105672|chr19:35644757-35644757|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27001953125 2 533.710939 1065.40732 0.30748 0.0001641 0.86573 0.00046205 1.1732 0.00062615 533.7113049371245 41.668 0.3856 39.017 38.755 39.141 -2.651 17 10 2 0 0 0 0.90091 1 7478 7478 3.2813 0 1 1072700 47197 2333 31410 31430 46419 46419 -0.12276240218488965 TSWLLYYSF 9 Unmodified _TSWLLYYSF_ 0 0 0 ENST00000563579.1_1_16:18794333-18795003:-|nuORF ENST00000563579.1_1_16:18794333-18795003:-|nuORF ENST00000563579.1_1_16:18794333-18795003:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2645263671875 2 590.289682 1178.56481 0.45619 0.00026928 -4.0449 -0.0023877 -3.5887 -0.0021184 590.7888239765783 77.596 0.31792 74.133 73.934 74.252 -3.4633 9 8 2 0 0 0 0.79204 1 15118 15118 7.2892 0 1 1096800 47198 11334 31411 31431 46420 46420 -0.01732792616826373 TSWPLTKRY 9 Unmodified _TSWPLTKRY_ 0 0 0 REV__MEST|p.R302W|1|0.16|ENSG00000106484|chr7:130504952-130504952|C/T|missense_variant REV__MEST|p.R302W|1|0.16|ENSG00000106484|chr7:130504952-130504952|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3139038085938 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 56.662 1 53.472 52.972 53.972 -3.1895 0 0 0 0.23508 1 10507 10507 12.532 1.7076 1 + 47199 23847 31412 31432 46421 46421 0.044211207429498245 TSWSHWPP 8 Unmodified _TSWSHWPP_ 0 0 0 nc|ENSG00000158816|Q5TIE3-4|VWA5B1 nc|ENSG00000158816|Q5TIE3-4|VWA5B1 nc|ENSG00000158816|Q5TIE3-4|VWA5B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.8697204589844 3 333.155732 996.445365 -0.67925 -0.0002263 -0.45918 -0.00015298 -1.1384 -0.00037927 333.15562223827624 36.033 0.45696 33.64 33.451 33.908 -2.3938 19 12 2 0 0 0 1.0265 1 6631 6631 1.6526 0.58116 1 1548000 47200 12400 31413 31433 46422 46422 -0.05299941450869028 TSWSHWPP 8 Unmodified _TSWSHWPP_ 0 0 0 nc|ENSG00000158816|Q5TIE3-4|VWA5B1 nc|ENSG00000158816|Q5TIE3-4|VWA5B1 nc|ENSG00000158816|Q5TIE3-4|VWA5B1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 333.155732 996.445365 -0.421 -0.00014026 -0.9381 -0.00031253 -1.3591 -0.00045279 333.1554252686895 33.934 0.4899 33.934 33.654 34.144 0 0.14695 -0.00017939 NaN 1.6526 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1782000 47201 12400 31413 31433 -0.05299941450869028 TSYAKKRG 8 Unmodified _TSYAKKRG_ 0 0 0 REV__ENSG00000203663|ENST00000641771|OR2L2 REV__ENSG00000203663|ENST00000641771|OR2L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.03985595703125 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 33.556 1 31.238 30.738 31.738 -2.3175 0 0 0 0.21486 1 6140 6140 1.6526 0 1 + 47202 19339 31414 31434 46423 46423 0.044843204745689036 TSYAKKRG 8 Unmodified _TSYAKKRG_ 0 0 0 REV__ENSG00000203663|ENST00000641771|OR2L2 REV__ENSG00000203663|ENST00000641771|OR2L2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.0395812988281 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 50.249 1 47.368 46.868 47.868 -2.8811 0 0 0 0.21486 1 9532 9532 1.6526 0 1 + 47203 19339 31414 31434 46424 46424 0.044843204745689036 TSYGVNRSP 9 Unmodified _TSYGVNRSP_ 0 0 0 REV__ENSG00000151612|ENST00000508784|ZNF827 REV__ENSG00000151612|ENST00000508784|ZNF827 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2578430175781 2 490.743431 979.472308 0.23143 0.00011357 -0.12542 -6.1548E-05 0.10601 5.2022E-05 490.7433421125579 32.064 1.2922 29.916 29.514 30.806 -2.1483 110 36 5 0 0 0 0.82765 1 5469 5469 5.7319 0 1 58166000 + 47204 17074 31415 31435 46425 46425 -0.01824877630338051 TSYIRKKGKY 10 Unmodified _TSYIRKKGKY_ 0 0 0 tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1 tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1 tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.758056640625 2 622.361505 1242.70846 NaN NaN NaN NaN NaN NaN NaN 72.125 1 68.586 68.086 69.086 -3.5385 0 0 0 2.8426 1 13682 13682 0.26539 0.23918 1 47205 26044 31416 31436 46426 46426 0.09681054214138385 TSYLTRVGP 9 Unmodified _TSYLTRVGP_ 0 0 0 ENSG00000079393|ENST00000478873|DUSP13 ENSG00000079393|ENST00000478873|DUSP13 ENSG00000079393|ENST00000478873|DUSP13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.00543212890625 3 331.850308 992.529095 -0.68282 -0.00022659 0.72794 0.00024157 0.045124 1.4974E-05 331.85050118035326 36.437 2.2116 34.043 32.67 34.881 -2.3938 189 62 4 0 0 0 0.8825 1 6467 6467 2.7352 0 1 9621400 47206 1595 31417 31437 46427 46427 0.03253169926199462 TSYNANMQAPY 11 Unmodified _TSYNANMQAPY_ 0 0 0 REV__ENSG00000151474|ENST00000357447|FRMD4A REV__ENSG00000151474|ENST00000357447|FRMD4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7632446289062 2 630.271695 1258.52884 1.0139 0.00063903 1.1762 0.00074135 2.1901 0.0013804 630.2723374671044 19.12 0.41802 17.723 17.537 17.955 -1.3966 27 11 4 0 0 0 0.50871 2 3116 3116;3159 22.736 0.98964 1 2660700 + 47207 17069 31418 31438 46428;46429 46428 -0.09008617855965895 TSYQRSMHAY 10 Unmodified _TSYQRSMHAY_ 0 0 0 ENSG00000139437|ENST00000405876|TCHP;ENST00000537218.1_1_12:110338138-110342619:+|nuORF;TCHP|p.K174Nfs*26|1|0.41|ENSG00000139437|chr12:109906630-109906630|A/-|frameshift_variant ENSG00000139437|ENST00000405876|TCHP ENSG00000139437|ENST00000405876|TCHP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7660522460938 2 622.279854 1242.54516 0.35071 0.00021824 -1.1845 -0.0007371 -0.83379 -0.00051885 622.2792167883441 96.248 0.86258 92.013 91.676 92.539 -4.2348 48 24 3 0 0 0 0.18836 1 18387 18387 1.9275 0 1 4328700 47208 4247 31419 31439 46430 46430 -0.06641491899199536 TSYSSDYSDYS 11 Unmodified _TSYSSDYSDYS_ 0 0 0 REV__KHDRBS3|p.N289S|1|0.08|ENSG00000131773|chr8:135607013-135607013|A/G|missense_variant REV__KHDRBS3|p.N289S|1|0.08|ENSG00000131773|chr8:135607013-135607013|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24609375 3 425.494695 1273.46226 0.028341 1.2059E-05 -1.5415 -0.0006559 -1.5132 -0.00064384 425.49441999176776 35.782 0.73856 33.505 33.212 33.95 -2.2766 33 20 2 0 0 0 0.96072 1 6304 6304 7.9454 0.46833 1 1257900 + 47209 23710 31420 31440 46431 46431 -0.16353574936874793 TSYVAPVLL 9 Unmodified _TSYVAPVLL_ 0 0 0 REV__ENST00000506326.1_1_3:134085404-134085665:-|nuORF REV__ENST00000506326.1_1_3:134085404-134085665:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7828674316406 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 18.482 1 17.157 16.657 17.657 -1.3251 0 0 0 0.23508 1 2773 2773 4.3292 1.7518 1 + 47210 22489 31421 31441 46432 46432 0.06612126217100922 TSYVIKRK 8 Unmodified _TSYVIKRK_ 0 0 0 REV__ENST00000423022.1_1_7:32919436-32930752:-|nuORF REV__ENST00000423022.1_1_7:32919436-32930752:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.2064208984375 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 113.79 1 109.33 108.83 109.83 -4.4539 0 0 0 0.21486 1 22419 22419 1.6526 0 1 + 47211 21529 31422 31442 46433 46433 0.10006039576865078 TSYYSKNG 8 Unmodified _TSYYSKNG_ 0 0 0 tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1 tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1 tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23834228515625 2 460.211432 918.408311 0.47618 0.00021914 -0.33166 -0.00015264 0.14451 6.6506E-05 460.21125317297543 31.767 0.45516 29.619 29.444 29.9 -2.1483 20 12 2 0 0 0 0.99494 1 5457 5457 4.756 4.756 1 929030 47212 26016 31423 31443 46434 46434 -0.05415657787273176 TTAERSKGIG 10 Unmodified _TTAERSKGIG_ 0 0 0 REV__SHARPIN|p.P329Hfs*83|1|0.11|ENSG00000179526|chr8:144099142-144099142|G/-|frameshift_variant REV__SHARPIN|p.P329Hfs*83|1|0.11|ENSG00000179526|chr8:144099142-144099142|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 510.2473449707031 2 510.277638 1018.54072 NaN NaN NaN NaN NaN NaN NaN 153.35 1 148.58 148.08 149.08 -4.7684 0 0 0 2.8426 1 30476 30476 6.6304 1.7334 1 + 47213 24613 31424 31444 46435 46435 0.032193669495200083 TTAMLGDCEE 10 Unmodified _TTAMLGDCEE_ 0 0 0 REV__ENSG00000038219|ENST00000040738|BOD1L1;REV__BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant REV__ENSG00000038219|ENST00000040738|BOD1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.1430358886719 3 357.144064 1068.41036 NaN NaN NaN NaN NaN NaN NaN 97.717 1 93.619 93.119 94.119 -4.0978 0 0 0 2.8426 1 19179 19179 14.405 14.278 1 + 47214 14038;13201 31425 31445 46436 46436 -0.12110733155986964 TTAMPSSSWL 10 Unmodified _TTAMPSSSWL_ 0 0 0 REV__nc|ENSG00000168066|Q15637-6|SF1 REV__nc|ENSG00000168066|Q15637-6|SF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2732543945312 2 540.755149 1079.49575 0.47179 0.00025512 1.5003 0.00081127 1.972 0.0010664 541.2588048134088 120.39 0.2039 115.86 115.72 115.92 -4.5221 6 5 2 0 0 0 1.1001 1 23711 23711 3.5927 3.1844 1 554990 + 47215 24154 31426 31446 46437 46437 -0.040821999080208116 TTAQLNLL 8 Unmodified _TTAQLNLL_ 0 0 0 ENST00000220853.7_1_8:109498842-109498953:+|nuORF ENST00000220853.7_1_8:109498842-109498953:+|nuORF ENST00000220853.7_1_8:109498842-109498953:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.217529296875 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 97.776 1 97.776 97.276 98.276 0 0 0 0 0.14536 1 19162 19162 38.151 0 1 47216 8131 31427 31447 46438 46438 0.055383825231729134 TTATFQSRVA 10 Unmodified _TTATFQSRVA_ 0 0 0 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2603759765625 2 541.285463 1080.55637 0.22782 0.00012332 -0.16888 -9.1412E-05 0.058942 3.1905E-05 541.2853203193685 16.664 0.37766 16.664 16.473 16.851 0 29 10 4 0 0 0 0.28981 1 2600 2600 55.503 5.9485 1 12154000 47217 25728 31428 31448 46439 46439 0.019316534665676954 TTATFQSRVA 10 Unmodified _TTATFQSRVA_ 0 0 0 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2612915039062 2 541.285463 1080.55637 0.072002 3.8974E-05 0.026536 1.4364E-05 0.098538 5.3337E-05 541.2854630113176 17.938 0.42743 16.627 16.404 16.831 -1.3109 31 11 4 0 0 0 0.20972 1 2914 2914 43.772 1.8168 1 10297000 47218 25728 31428 31448 46440 46440 0.019316534665676954 TTATFQSRVA 10 Unmodified _TTATFQSRVA_ 0 0 0 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.285463 1080.55637 0.072002 3.8974E-05 0.026536 1.4364E-05 0.098538 5.3337E-05 541.2854630113176 17.938 0.42743 16.627 16.404 16.831 -1.3109 0.0044388 -7.3789E-05 NaN 43.772 31 11 4 NaN NaN NaN NaN 0 NaN NaN 0 10297000 47219 25728 31428 31448 0.019316534665676954 TTATFQSRVA 10 Unmodified _TTATFQSRVA_ 0 0 0 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 541.285463 1080.55637 -0.35229 -0.00019069 0.54964 0.00029751 0.19734 0.00010682 541.2857311010298 17.849 0.44438 16.577 16.419 16.864 -1.2722 -0.045833 0.0004925 NaN 43.772 32 12 4 NaN NaN NaN NaN 0 NaN NaN 0 5728600 47220 25728 31428 31448 0.019316534665676954 TTATPTHCAY 10 Unmodified _TTATPTHCAY_ 0 0 0 nc|ENSG00000213918|P24855-2|DNASE1;ENST00000571460.5_1_16:3704910-3712757:+|nuORF;ENSG00000213918|ENST00000246949|DNASE1 nc|ENSG00000213918|P24855-2|DNASE1 nc|ENSG00000213918|P24855-2|DNASE1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2847900390625 2 533.237124 1064.45969 NaN NaN NaN NaN NaN NaN NaN 61.095 1 57.726 57.226 58.226 -3.3694 0 0 0 0.22588 1 11386 11386 10.824 0.75 1 47221 7707 31429 31449 46441 46441 -0.06995657084894447 TTAVKIGII 9 Unmodified _TTAVKIGII_ 0 0 0 nc|ENSG00000099810|Q13126-7|MTAP;nc|ENSG00000099810|Q13126-4|MTAP;ENSG00000099810|ENST00000644715|MTAP;nc|ENSG00000099810|Q13126-6|MTAP;nc|ENSG00000099810|Q13126-5|MTAP;nc|ENSG00000099810|Q13126-3|MTAP;nc|ENSG00000099810|Q13126-2|MTAP nc|ENSG00000099810|Q13126-7|MTAP nc|ENSG00000099810|Q13126-7|MTAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2408447265625 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 88.209 1 84.416 83.916 84.916 -3.7926 0 0 0 0.23508 1 17252 17252 4.3292 1.44 1 47222 1900 31430 31450 46442 46442 0.11936118971038923 TTCTKSQPN 9 Unmodified _TTCTKSQPN_ 0 0 0 ENSG00000170367|ENST00000304710|CST5 ENSG00000170367|ENST00000304710|CST5 ENSG00000170367|ENST00000304710|CST5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2737731933594 2 490.229299 978.444045 NaN NaN NaN NaN NaN NaN NaN 75.69 1 75.69 75.19 76.19 0 0 0 0 0.22962 1 14705 14705 14.838 2.3067 1 47223 6063 31431 31451 46443 46443 -0.04603943601921401 TTCTSRTSM 9 Unmodified _TTCTSRTSM_ 0 0 0 REV__ENST00000217315.9_1_20:30729570-30730884:+|nuORF REV__ENST00000217315.9_1_20:30729570-30730884:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 494.217041015625 2 494.215334 986.416116 NaN NaN NaN NaN NaN NaN NaN 169.34 1 164.55 164.05 165.05 -4.7898 0 0 0 0.19679 1 34299 34299 0.073264 0 1 + 47224 20023 31432 31452 46444 46444 -0.07763589853652775 TTDAKQPI 8 Unmodified _TTDAKQPI_ 0 0 0 REV__nc|ENSG00000008300|Q9NYQ7-2|CELSR3 REV__nc|ENSG00000008300|Q9NYQ7-2|CELSR3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23614501953125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 98.849 1 98.849 98.349 99.349 0 0 0 0 0.21323 1 19378 19378 14.582 1.0738 1 + 47225 23926 31433 31453 46445 46445 0.019015056264720442 TTDAQKMDMY 10 Unmodified _TTDAQKMDMY_ 0 0 0 REV__ENST00000509092.5_1_4:55124935-55146696:+|nuORF REV__ENST00000509092.5_1_4:55124935-55146696:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2809448242188 2 602.254656 1202.49476 NaN NaN NaN NaN NaN NaN NaN 64.691 1 61.232 60.732 61.732 -3.4581 0 0 0 0.22569 1 12094 12094 15.847 5.7733 1 + 47226 22522 31434 31454 46446 46446 -0.09838782339238605 TTDAQKMDMY 10 Unmodified _TTDAQKMDMY_ 0 0 0 REV__ENST00000509092.5_1_4:55124935-55146696:+|nuORF REV__ENST00000509092.5_1_4:55124935-55146696:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2803955078125 2 602.254656 1202.49476 NaN NaN NaN NaN NaN NaN NaN 103.4 1 99.054 98.554 99.554 -4.346 0 0 0 2.8426 1 19804 19804 6.5879 0 1 + 47227 22522 31434 31454 46447 46447 -0.09838782339238605 TTDCPNLQPY 10 Unmodified _TTDCPNLQPY_ 0 0 0 ENSG00000163254|ENST00000282141|CRYGC;ENSG00000182187|ENST00000260988|CRYGB ENSG00000163254|ENST00000282141|CRYGC ENSG00000163254|ENST00000282141|CRYGC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.314453125 2 576.255514 1150.49647 0.18293 0.00010541 -0.061992 -3.5723E-05 0.12093 6.9689E-05 576.2554560779189 58.094 0.41571 54.843 54.616 55.032 -3.2517 19 11 2 0 0 0 0.57807 1 10779 10779 20.415 3.4722 1 1331300 47228 5411 31435 31455 46448 46448 -0.07275405258974388 TTDDSRHSER 10 Unmodified _TTDDSRHSER_ 0 0 0 VPS8|p.D867_D868insITNTT|1|0.03|ENSG00000156931|chr3:184926620-184926621|-/ATAACAAATACCACA|inframe_insertion VPS8|p.D867_D868insITNTT|1|0.03|ENSG00000156931|chr3:184926620-184926621|-/ATAACAAATACCACA|inframe_insertion VPS8|p.D867_D868insITNTT|1|0.03|ENSG00000156931|chr3:184926620-184926621|-/ATAACAAATACCACA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2733154296875 2 602.271072 1202.52759 NaN NaN NaN NaN NaN NaN NaN 28.234 1 28.234 27.734 28.734 0 0 0 0 0.22588 1 5008 5008 13.042 2.2185 1 47229 26571 31436 31456 46449 46449 -0.06557115900500321 TTDEHDYFTD 10 Unmodified _TTDEHDYFTD_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.1695861816406 3 415.163169 1242.46768 0.19626 8.148E-05 0.018291 7.5939E-06 0.21455 8.9074E-05 415.16319753464467 103.04 1.7929 99.014 98.009 99.802 -4.0212 92 50 2 0 0 0 0.47483 1 19698 19698 1.9064 0 1 3765400 + 47230 18352 31437 31457 46450 46450 -0.1438585135442736 TTDEHDYFTD 10 Unmodified _TTDEHDYFTD_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 415.163169 1242.46768 -0.25927 -0.00010764 0.45422 0.00018857 0.19495 8.0936E-05 415.1633688222082 103.15 1.6562 98.962 98.2 99.857 -4.1861 -0.0093716 0.00038007 NaN 1.9064 85 47 2 NaN NaN NaN NaN 0 NaN NaN 0 3103900 + 47231 18352 31437 31457 -0.1438585135442736 TTDEHDYFTD 10 Unmodified _TTDEHDYFTD_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 415.163169 1242.46768 0.22269 9.2451E-05 0.0029636 1.2304E-06 0.22565 9.3682E-05 415.16316994215083 103.28 1.8131 98.938 98.02 99.833 -4.346 -0.033495 -0.00018196 NaN 1.9064 78 51 2 NaN NaN NaN NaN 0 NaN NaN 0 3318300 + 47232 18352 31437 31457 -0.1438585135442736 TTDEHDYFTD 10 Unmodified _TTDEHDYFTD_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 415.163169 1242.46768 0.19626 8.148E-05 0.018291 7.5939E-06 0.21455 8.9074E-05 415.16319753464467 103.04 1.7929 99.014 98.009 99.802 -4.0212 0.042867 -0.00016287 NaN 1.9064 92 50 2 NaN NaN NaN NaN 0 NaN NaN 0 3765400 + 47233 18352 31437 31457 -0.1438585135442736 TTDENKVPY 9 Unmodified _TTDENKVPY_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2648315429688 2 533.756204 1065.49785 0.1451 7.7446E-05 0.0043611 2.3278E-06 0.14946 7.9774E-05 533.7561752435978 35.872 0.8329 35.872 35.52 36.353 0 76 23 4 0 0 0 2.8988000000000002E-24 1 6627 6627 191.38 131.31 1 94647000 47234 2532 31438 31458 46451 46451 -0.03227447898552782 TTDENKVPY 9 Unmodified _TTDENKVPY_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2645263671875 2 533.756204 1065.49785 -0.24685 -0.00013176 0.39621 0.00021148 0.14937 7.9727E-05 533.7563666374821 38.403 0.87022 35.854 35.492 36.363 -2.5491 77 24 4 0 0 0 3.7335E-10 1 7137 7137 163.04 95.692 1 71968000 47235 2532 31438 31458 46452 46452 -0.03227447898552782 TTDENKVPY 9 Unmodified _TTDENKVPY_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2633666992188 2 533.756204 1065.49785 0.41333 0.00022062 -0.33419 -0.00017837 0.079144 4.2244E-05 533.7559857021856 38.303 0.95962 35.861 35.52 36.479 -2.4419 81 26 4 0 0 0 3.7335E-10 1 6793 6793 149.91 111.74 1 76984000 47236 2532 31438 31458 46453 46453 -0.03227447898552782 TTDENKVPY 9 Unmodified _TTDENKVPY_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2647094726562 2 533.756204 1065.49785 0.24759 0.00013215 -0.12431 -6.6351E-05 0.12328 6.5804E-05 533.7560823263509 38.263 0.94084 35.858 35.535 36.475 -2.4049 81 26 4 0 0 0 1.0099E-10 1 6789 6789 168.66 101.31 1 56228000 47237 2532 31438 31458 46454 46454 -0.03227447898552782 TTDFKVDT 8 Unmodified _TTDFKVDT_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;FLNB|p.G1596Vfs*33|1|0.36|ENSG00000136068|chr3:58136090-58136090|G/-|frameshift_variant;FLNB|p.A832Rfs*9|1|0.26|ENSG00000136068|chr3:58111795-58111796|-/C|frameshift_variant;FLNB|p.H532Tfs*9|1|0.31|ENSG00000136068|chr3:58104060-58104061|-/G|frameshift_variant;FLNB|p.G531Dfs*42|3|0.4|ENSG00000136068|chr3:58104061-58104061|G/-|frameshift_variant nc|ENSG00000136068|O75369-5|FLNB nc|ENSG00000136068|O75369-5|FLNB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2536926269531 2 463.726915 925.439277 0.67145 0.00031137 -0.82414 -0.00038218 -0.15269 -7.0809E-05 463.7264843215548 103.81 2.1902 99.755 99.278 101.47 -4.0543 156 61 4 0 0 0 8448 1 19916 19916 0.25148 0 1 96519000 47238 3982 31439 31459 46455 46455 -0.026425044730444824 TTDKTKPSNLV 11 Unmodified _TTDKTKPSNLV_ 0 0 0 ENSG00000136560|ENST00000392749|TANK ENSG00000136560|ENST00000392749|TANK ENSG00000136560|ENST00000392749|TANK MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2803955078125 2 602.33261 1202.65067 NaN NaN NaN NaN NaN NaN NaN 103.42 1 99.077 98.577 99.577 -4.346 0 0 0 0.22862 1 19807 19807 9.3831 0 1 47239 4023 31440 31460 46456 46456 0.057447474980335755 TTDLELIKY 9 Unmodified _TTDLELIKY_ 0 0 0 ENSG00000164109|ENST00000296509|MAD2L1;nc|ENSG00000164109|Q13257-2|MAD2L1;ENST00000511295.1_1_4:120986776-120987958:-|nuORF ENSG00000164109|ENST00000296509|MAD2L1 ENSG00000164109|ENST00000296509|MAD2L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7783813476562 2 548.300247 1094.58594 0.32417 0.00017774 -0.91345 -0.00050085 -0.58928 -0.0003231 548.2995564776079 122.86 1.0127 122.86 122.34 123.35 0 79 26 4 0 0 0 7.1259E-34 2 24191 24191;24250 193.29 93.495 1 34336000 47240 5509 31441 31461 46457;46458 46457 0.042431726920540314 TTDLELIKY 9 Unmodified _TTDLELIKY_ 0 0 0 ENSG00000164109|ENST00000296509|MAD2L1;nc|ENSG00000164109|Q13257-2|MAD2L1;ENST00000511295.1_1_4:120986776-120987958:-|nuORF ENSG00000164109|ENST00000296509|MAD2L1 ENSG00000164109|ENST00000296509|MAD2L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7765502929688 2 548.300247 1094.58594 0.26721 0.00014651 -0.70706 -0.00038768 -0.43984 -0.00024117 548.2996732848045 127.26 0.94138 122.65 122.15 123.1 -4.6172 89 25 5 0 0 0 0.00011658 1 25146 25146 125.53 56.424 1 49993000 47241 5509 31441 31461 46459 46459 0.042431726920540314 TTDLELIKY 9 Unmodified _TTDLELIKY_ 0 0 0 ENSG00000164109|ENST00000296509|MAD2L1;nc|ENSG00000164109|Q13257-2|MAD2L1;ENST00000511295.1_1_4:120986776-120987958:-|nuORF ENSG00000164109|ENST00000296509|MAD2L1 ENSG00000164109|ENST00000296509|MAD2L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7699584960938 2 548.300247 1094.58594 0.2288 0.00012545 -0.592 -0.0003246 -0.36321 -0.00019915 548.2997596550049 127.46 0.98896 122.67 122.27 123.26 -4.7958 80 24 4 0 0 0 5.2769E-24 2 24426 24426;24471 176.84 98.109 1 52297000 47242 5509 31441 31461 46460;46461 46460 0.042431726920540314 TTDLELIKY 9 Unmodified _TTDLELIKY_ 0 0 0 ENSG00000164109|ENST00000296509|MAD2L1;nc|ENSG00000164109|Q13257-2|MAD2L1;ENST00000511295.1_1_4:120986776-120987958:-|nuORF ENSG00000164109|ENST00000296509|MAD2L1 ENSG00000164109|ENST00000296509|MAD2L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7850341796875 2 548.300247 1094.58594 0.23279 0.00012764 -0.71398 -0.00039148 -0.48119 -0.00026384 548.2996626659059 127.46 1.0272 122.76 122.25 123.28 -4.6998 87 28 4 0 0 0 5.2769E-24 4 24508 24457;24463;24508;24518 176.84 87.884 1 41312000 47243 5509 31441 31461 46462;46463;46464;46465 46464 0.042431726920540314 TTDLHSMGQY 10 Unmodified _TTDLHSMGQY_ 0 0 0 tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1 tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1 tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.334716796875 2 576.753138 1151.49172 0.14248 8.2176E-05 -1.2997 -0.00074963 -1.1573 -0.00066746 576.7524794163636 49.214 0.61777 46.215 45.895 46.513 -2.999 25 17 3 0 0 0 0.86261 1 9020 9020 10.824 0.75 1 2589000 47244 26313 31442 31462 46466 46466 -0.07796289401721879 TTDLSFLDKY 10 Unmodified _TTDLSFLDKY_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2753295898438 2 601.800611 1201.58667 0.39257 0.00023625 0.19086 0.00011486 0.58343 0.00035111 601.8005709324914 142.86 0.62108 142.86 142.58 143.21 0 31 17 2 0 0 0 3.493E-17 1 28485 28485 171.46 127.61 1 12665000 47245 1162 31443 31463 46467 46467 -0.006060326589022225 TTDLSFLDKY 10 Unmodified _TTDLSFLDKY_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3019409179688 2 601.800611 1201.58667 1.0992 0.00066149 -0.53622 -0.0003227 0.56296 0.00033879 601.8003120369573 147.66 0.7462 142.95 142.59 143.34 -4.7095 44 21 3 0 0 0 3.9946E-33 5 29298 29249;29298;29308;29318;29325 184.36 127.61 1 15558000 47246 1162 31443 31463 46468;46469;46470;46471;46472 46469 -0.006060326589022225 TTDLSFLDKY 10 Unmodified _TTDLSFLDKY_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2881469726562 2 601.800611 1201.58667 0.47119 0.00028356 0.30167 0.00018154 0.77285 0.0004651 601.8005789375492 148.08 0.73993 142.92 142.62 143.36 -5.1557 50 20 3 0 0 0 4.5066E-24 3 28674 28620;28674;28732 176.43 124.16 1 11303000 47247 1162 31443 31463 46473;46474;46475 46474 -0.006060326589022225 TTDLSFLDKY 10 Unmodified _TTDLSFLDKY_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3018798828125 2 601.800611 1201.58667 0.41002 0.00024675 0.0555 3.34E-05 0.46552 0.00028015 601.8006494476144 147.87 0.8403 142.81 142.46 143.3 -5.0595 51 23 3 0 0 0 1.6657E-16 3 28648 28620;28648;28700 163.69 117.67 1 9098200 47248 1162 31443 31463 46476;46477;46478 46477 -0.006060326589022225 TTDLVDTWL 9 Unmodified _TTDLVDTWL_ 0 0 0 CON__ENSEMBL:ENSBTAP00000013050 CON__ENSEMBL:ENSBTAP00000013050 CON__ENSEMBL:ENSBTAP00000013050 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2700805664062 2 532.268947 1062.52334 -1.5217 -0.00080998 -0.39832 -0.00021201 -1.9201 -0.001022 532.2687273088768 15.665 0.5527 14.312 14.029 14.581 -1.3534 31 15 3 0 0 0 0.69259 1 2187 2187 6.7232 0.99131 1 1021500 + 47249 639 31444 31464 46479 46479 -0.005419733761300449 TTDPNSTF 8 Unmodified _TTDPNSTF_ 0 0 0 ENST00000461981.5_1_2:201722417-201724542:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1 ENST00000461981.5_1_2:201722417-201724542:-|nuORF ENST00000461981.5_1_2:201722417-201724542:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 883.3860473632812 1 882.383953 881.376677 0.60594 0.00053468 -0.35789 -0.0003158 0.24805 0.00021888 882.3835989320435 38.026 1.1003 38.026 37.612 38.712 0 44 30 2 0 0 0 0.54916 1 7058 7058 25.399 2.2509 1 2128200 47250 1099 31445 31465 46480 46480 -0.06875650541223877 TTDQPVRI 8 Unmodified _TTDQPVRI_ 0 0 0 tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1 tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1 tr|U7T567|U7T567_FUSNU3-oxoacyl-[acyl-carrier-protein]synthase2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00460PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25628662109375 2 465.256174 928.497795 0.41972 0.00019528 -0.45895 -0.00021353 -0.039232 -1.8253E-05 465.255921268426 44.77 0.66988 44.77 44.459 45.129 0 34 18 2 0 0 0 0.68128 1 8459 8459 16.942 1.0951 1 7942800 47251 26454 31446 31466 46481 46481 0.03068596892092046 TTDTALAIIY 10 Unmodified _TTDTALAIIY_ 0 0 0 ENSG00000274252|ENST00000619998|GGTLC3;nc|ENSG00000197421|A6NGU5|GGT3P;nc|ENSG00000133475|P36268|GGT2P;nc|ENSG00000133475|P36268-3|GGT2P;nc|ENSG00000133475|P36268-2|GGT2P ENSG00000274252|ENST00000619998|GGTLC3 ENSG00000274252|ENST00000619998|GGTLC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2733764648438 2 541.292422 1080.57029 0.49028 0.00026539 -0.33874 -0.00018336 0.15154 8.2029E-05 541.2918438355723 119.03 0.62691 114.62 114.32 114.94 -4.4088 25 17 2 0 0 0 0.79872 1 22932 22932 9.3831 0 1 1219700 47252 8016 31447 31467 46482 46482 0.03322886175010353 TTDVDYDEE 9 Unmodified _TTDVDYDEE_ 0 0 0 ENSG00000204131|ENST00000633930|NHSL2;nc|ENSG00000204131|Q5HYW2-2|NHSL2 ENSG00000204131|ENST00000633930|NHSL2 ENSG00000204131|ENST00000633930|NHSL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7828979492188 2 543.709116 1085.40368 NaN NaN NaN NaN NaN NaN NaN 155.86 1 151.09 150.59 151.59 -4.7791 0 0 0 0.19624 1 30984 30984 0 0 1 47253 7562 31448 31468 46483 46483 -0.1356063151138187 TTDVKKSK 8 Unmodified _TTDVKKSK_ 0 0 0 ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1 ENST00000506125.1_1_4:170671685-170679028:-|nuORF ENST00000506125.1_1_4:170671685-170679028:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7682800292969 2 453.766374 905.518196 NaN NaN NaN NaN NaN NaN NaN 137.9 1 133.26 132.76 133.76 -4.6413 0 0 0 0.21323 1 27219 27219 14.582 2.0501 1 47254 1277 31449 31469 46484 46484 0.0616576755190863 TTDVPRIQ 8 Unmodified _TTDVPRIQ_ 0 0 0 REV__ENSG00000206531|ENST00000488794|CD200R1L REV__ENSG00000206531|ENST00000488794|CD200R1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2542724609375 2 465.256174 928.497795 NaN NaN NaN NaN NaN NaN NaN 98.446 1 98.446 97.946 98.946 0 0 0 0 0.19954 1 19296 19296 24.674 5.2349 1 + 47255 19623 31450 31470 46485 46485 0.03068596892092046 TTDVVKKREQ 10 Unmodified _TTDVVKKREQ_ 0 0 0 REV__nc|ENSG00000070814|Q13428-2|TCOF1 REV__nc|ENSG00000070814|Q13428-2|TCOF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2816162109375 2 602.338227 1202.6619 NaN NaN NaN NaN NaN NaN NaN 97.854 1 97.854 97.354 98.354 0 0 0 0 0.22588 1 19178 19178 10.074 1.3285 1 + 47256 14268 31451 31471 46486 46486 0.06867569592191103 TTDYGNFL 8 Unmodified _TTDYGNFL_ 0 0 0 ATP6V0D2|p.R77Dfs*24|1|0.39|ENSG00000147614|chr8:86113804-86113804|A/-|frameshift_variant;ENSG00000147614|ENST00000285393|ATP6V0D2 ATP6V0D2|p.R77Dfs*24|1|0.39|ENSG00000147614|chr8:86113804-86113804|A/-|frameshift_variant ATP6V0D2|p.R77Dfs*24|1|0.39|ENSG00000147614|chr8:86113804-86113804|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25390625 2 465.713808 929.413062 -0.062983 -2.9332E-05 0.29147 0.00013574 0.22849 0.00010641 465.7138625715289 102.18 0.72917 97.995 97.612 98.341 -4.1861 53 20 4 0 0 0 0.98792 1 20137 20137 9.3474 0 1 6612400 47257 274 31452 31472 46487 46487 -0.054467736445189985 TTDYGNFL 8 Unmodified _TTDYGNFL_ 0 0 0 ATP6V0D2|p.R77Dfs*24|1|0.39|ENSG00000147614|chr8:86113804-86113804|A/-|frameshift_variant;ENSG00000147614|ENST00000285393|ATP6V0D2 ATP6V0D2|p.R77Dfs*24|1|0.39|ENSG00000147614|chr8:86113804-86113804|A/-|frameshift_variant ATP6V0D2|p.R77Dfs*24|1|0.39|ENSG00000147614|chr8:86113804-86113804|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25439453125 2 465.713808 929.413062 0.47796 0.00022259 -0.19112 -8.9009E-05 0.28684 0.00013358 465.71368737283717 101.94 0.68945 97.918 97.63 98.32 -4.0212 42 19 3 0 0 0 0.98792 1 19641 19641 14.582 0 1 3747700 47258 274 31452 31472 46488 46488 -0.054467736445189985 TTECCAPRCC 10 Unmodified _TTECCAPRCC_ 0 0 0 REV__nc|ENSG00000198083|Q9BYP9|KRTAP9-9 REV__nc|ENSG00000198083|Q9BYP9|KRTAP9-9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7835083007812 2 543.695397 1085.37624 NaN NaN NaN NaN NaN NaN NaN 57.01 1 53.82 53.32 54.32 -3.1895 0 0 0 2.8426 1 10576 10576 0.063865 0 1 + 47259 18686 31453 31473 46489 46489 -0.16303176120254648 TTEETLTMLY 10 Unmodified _TTEETLTMLY_ 0 0 0 ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2 ENSG00000095002|ENST00000233146|MSH2 ENSG00000095002|ENST00000233146|MSH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2882080078125 2 601.286479 1200.55841 1.0962 0.00065911 0.46935 0.00028221 1.5655 0.00094132 601.2869226758214 149.56 1.0123 144.83 144.49 145.5 -4.7323 57 28 3 0 0 0 0.38172 1 29694 29694 46.021 30.772 1 7741500 47260 1850 31454 31474 46490 46490 -0.03385098630496941 TTEETLTMLY 10 Unmodified _TTEETLTMLY_ 0 0 0 ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2 ENSG00000095002|ENST00000233146|MSH2 ENSG00000095002|ENST00000233146|MSH2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.291748046875 2 601.286479 1200.55841 0.48425 0.00029117 1.3485 0.00081084 1.8328 0.001102 601.2874115892747 150 1.1898 144.8 144.47 145.66 -5.1994 60 33 3 0 0 0 0.64697 1 29091 29091 25.399 10.561 1 5776500 47261 1850 31454 31474 46491 46491 -0.03385098630496941 TTEETLTMLY 10 Unmodified _TTEETLTMLY_ 0 0 0 ENSG00000095002|ENST00000233146|MSH2;nc|ENSG00000095002|P43246-2|MSH2 ENSG00000095002|ENST00000233146|MSH2 ENSG00000095002|ENST00000233146|MSH2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 601.286479 1200.55841 0.42375 0.00025479 0.26219 0.00015765 0.68594 0.00041244 601.286706968172 149.95 0.56956 144.83 144.46 145.03 -5.1204 0.010637 -0.00038268 NaN 46.021 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3588700 47262 1850 31454 31474 -0.03385098630496941 TTEKPLKT 8 Unmodified _TTEKPLKT_ 0 0 0 REV__tr|U7SGC8|U7SGC8_FUSNU50SribosomalproteinL31OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02260PE=3SV=1 REV__tr|U7SGC8|U7SGC8_FUSNU50SribosomalproteinL31OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02260PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2336730957031 2 459.26875 916.522947 0.024304 1.1162E-05 0.36269 0.00016657 0.38699 0.00017773 459.26884977446264 139.13 0.85692 134.18 133.78 134.64 -4.952 54 23 3 0 0 0 8448 1 26845 26845 0.0082765 0 1 9570800 + 47263 24872 31455 31475 46492 46492 0.06134651694674176 TTELNHHAY 9 Unmodified _TTELNHHAY_ 0 0 0 RHOT1|p.K412Nfs*12|1|0.46|ENSG00000126858|chr17:32202799-32202799|A/-|frameshift_variant;RHOT1|p.N428Tfs*16|1|0.43|ENSG00000126858|chr17:32202847-32202847|A/-|frameshift_variant;nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1 RHOT1|p.K412Nfs*12|1|0.46|ENSG00000126858|chr17:32202799-32202799|A/-|frameshift_variant RHOT1|p.K412Nfs*12|1|0.46|ENSG00000126858|chr17:32202799-32202799|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7808837890625 2 543.254163 1084.49377 -0.099923 -5.4283E-05 0.37505 0.00020375 0.27513 0.00014947 543.2543250801929 22.448 0.24517 20.995 20.838 21.083 -1.4535 10 6 2 0 0 0 0.79204 1 3590 3590 16.942 3.0362 1 540630 47264 3451 31456 31476 46493 46493 -0.045094926016190584 TTENFVTADP 10 Unmodified _TTENFVTADP_ 0 0 0 nc|ENSG00000228789|E2RYF7|HCG22 nc|ENSG00000228789|E2RYF7|HCG22 nc|ENSG00000228789|E2RYF7|HCG22 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7733764648438 2 547.753661 1093.49277 -0.25119 -0.00013759 1.1745 0.00064332 0.92328 0.00050573 548.2571540404765 24.114 1.2091 22.261 21.672 22.881 -1.8534 52 32 2 0 0 0 0.72607 1 4030 4030 24.991 6.856 1 1598000 47265 12603 31457 31477 46494 46494 -0.05023751761200401 TTESEVMKY 9 Unmodified _TTESEVMKY_ 0 0 0 ENST00000555252.5_1_14:64855058-64907131:+|nuORF;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant ENST00000555252.5_1_14:64855058-64907131:+|nuORF ENST00000555252.5_1_14:64855058-64907131:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.782958984375 2 544.25244 1086.49033 0.32484 0.0001768 -0.29795 -0.00016216 0.026893 1.4637E-05 544.2522467100973 53.499 1.1719 53.499 53.11 54.282 0 92 32 4 0 0 0 1.6154E-06 1 10190 10190 157.8 105.53 1 16527000 47266 2007 31458 31478 46495 46495 -0.04945923490504356 TTESEVMKY 9 Unmodified _TTESEVMKY_ 0 0 0 ENST00000555252.5_1_14:64855058-64907131:+|nuORF;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant ENST00000555252.5_1_14:64855058-64907131:+|nuORF ENST00000555252.5_1_14:64855058-64907131:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7777099609375 2 544.25244 1086.49033 0.068472 3.7266E-05 -0.14924 -8.1225E-05 -0.080769 -4.3959E-05 544.2523973450475 56.45 1.074 53.555 53.235 54.309 -2.8944 88 30 4 0 0 0 0.54058 1 10970 10970 12.241 12.241 1 16020000 47267 2007 31458 31478 46496 46496 -0.04945923490504356 TTESEVMKY 9 Unmodified _TTESEVMKY_ 0 0 0 ENST00000555252.5_1_14:64855058-64907131:+|nuORF;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant ENST00000555252.5_1_14:64855058-64907131:+|nuORF ENST00000555252.5_1_14:64855058-64907131:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.795166015625 2 544.25244 1086.49033 0.089866 4.891E-05 -0.1009 -5.4918E-05 -0.011038 -6.0075E-06 544.2523903560483 56.686 1.1119 53.496 53.231 54.343 -3.1895 90 31 4 0 0 0 1.6154E-06 1 10497 10497 145.13 92.861 1 15963000 47268 2007 31458 31478 46497 46497 -0.04945923490504356 TTESEVMKY 9 Unmodified _TTESEVMKY_ 0 0 0 ENST00000555252.5_1_14:64855058-64907131:+|nuORF;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant ENST00000555252.5_1_14:64855058-64907131:+|nuORF ENST00000555252.5_1_14:64855058-64907131:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7893676757812 2 544.25244 1086.49033 0.1184 6.4439E-05 -0.25423 -0.00013837 -0.13583 -7.3927E-05 544.2523336098586 56.71 1.1329 53.534 53.224 54.357 -3.1761 103 31 4 0 0 0 0.10537 1 10631 10631 67.838 65.911 1 15258000 47269 2007 31458 31478 46498 46498 -0.04945923490504356 TTESWSNYY 9 Unmodified _TTESWSNYY_ 0 0 0 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3272094726562 2 575.738011 1149.46147 0.65325 0.0003761 -0.16769 -9.6548E-05 0.48555 0.00027955 575.7377641328404 103.45 0.58591 103.45 103.1 103.69 0 22 16 2 0 0 0 0.46004 1 20311 20311 14.987 12.104 1 1216300 47270 1799 31459 31479 46499 46499 -0.10728324795286426 TTESWSNYY 9 Unmodified _TTESWSNYY_ 0 0 0 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3279418945312 2 575.738011 1149.46147 -0.5215 -0.00030025 0.87104 0.00050149 0.34953 0.00020124 575.7385647464542 108.3 0.62538 103.98 103.76 104.39 -4.32 27 17 2 0 0 0 0.77732 1 21330 21330 18.135 8.7519 1 2087500 47271 1799 31459 31479 46500 46500 -0.10728324795286426 TTESWSNYY 9 Unmodified _TTESWSNYY_ 0 0 0 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27 RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3193359375 2 575.738011 1149.46147 -0.0080197 -4.6172E-06 0.73392 0.00042254 0.7259 0.00041793 575.7383787169498 108.38 0.78738 103.96 103.44 104.23 -4.4121 47 22 3 0 0 0 0.41781 1 20809 20809 24.674 10.768 1 2669800 47272 1799 31459 31479 46501 46501 -0.10728324795286426 TTETAEASL 9 Unmodified _TTETAEASL_ 0 0 0 REV__ENSG00000205592|ENST00000454784|MUC19 REV__ENSG00000205592|ENST00000454784|MUC19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.149169921875 3 308.150312 921.429106 NaN NaN NaN NaN NaN NaN NaN 99.441 1 95.308 94.808 95.808 -4.1326 0 0 0 0.23508 1 19534 19534 2.7352 0 1 + 47273 19595 31460 31480 46502 46502 -0.03475112198282204 TTETDMDMDT 10 Unmodified _TTETDMDMDT_ 0 0 0 REV__REM2|p.R64Dfs*20|1|0.35|ENSG00000139890|chr14:22884755-22884755|C/-|frameshift_variant REV__REM2|p.R64Dfs*20|1|0.35|ENSG00000139890|chr14:22884755-22884755|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.71234130859375 3 387.1425 1158.40567 -0.074893 -2.8994E-05 -0.55392 -0.00021445 -0.62882 -0.00024344 387.142247372678 30.84 1.1503 30.84 30.485 31.635 0 88 32 4 0 0 0 0.52989 1 5599 5599 0.0013812 0.0013812 1 8188200 + 47274 16549 31461 31481 46503 46503 -0.16719662089417398 TTETDMDMDT 10 Unmodified _TTETDMDMDT_ 0 0 0 REV__REM2|p.R64Dfs*20|1|0.35|ENSG00000139890|chr14:22884755-22884755|C/-|frameshift_variant REV__REM2|p.R64Dfs*20|1|0.35|ENSG00000139890|chr14:22884755-22884755|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7130432128906 3 387.1425 1158.40567 -0.1922 -7.4407E-05 -0.55502 -0.00021487 -0.74722 -0.00028928 387.14225551792856 33.264 1.1385 30.946 30.526 31.664 -2.3175 93 32 4 0 0 0 0.52989 1 6113 6113 0.0013812 0.0013812 1 7000700 + 47275 16549 31461 31481 46504 46504 -0.16719662089417398 TTETDMDMDT 10 Unmodified _TTETDMDMDT_ 0 0 0 REV__REM2|p.R64Dfs*20|1|0.35|ENSG00000139890|chr14:22884755-22884755|C/-|frameshift_variant REV__REM2|p.R64Dfs*20|1|0.35|ENSG00000139890|chr14:22884755-22884755|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.71197509765625 3 387.1425 1158.40567 -0.23049 -8.9232E-05 -0.4949 -0.0001916 -0.72539 -0.00028083 387.1422794710753 33.176 1.2175 30.96 30.56 31.777 -2.2158 88 34 3 0 0 0 0.52989 1 5841 5841 0.0013812 0 1 5997700 + 47276 16549 31461 31481 46505 46505 -0.16719662089417398 TTETDMDMDT 10 Unmodified _TTETDMDMDT_ 0 0 0 REV__REM2|p.R64Dfs*20|1|0.35|ENSG00000139890|chr14:22884755-22884755|C/-|frameshift_variant REV__REM2|p.R64Dfs*20|1|0.35|ENSG00000139890|chr14:22884755-22884755|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 387.1425 1158.40567 -0.1922 -7.4407E-05 -0.55502 -0.00021487 -0.74722 -0.00028928 387.14225551792856 33.264 1.1385 30.946 30.526 31.664 -2.3175 0.0059327 8.1143E-05 NaN 0.0013812 93 32 4 NaN NaN NaN NaN 0 NaN NaN 0 7000700 + 47277 16549 31461 31481 -0.16719662089417398 TTETDMDMDT 10 Unmodified _TTETDMDMDT_ 0 0 0 REV__REM2|p.R64Dfs*20|1|0.35|ENSG00000139890|chr14:22884755-22884755|C/-|frameshift_variant REV__REM2|p.R64Dfs*20|1|0.35|ENSG00000139890|chr14:22884755-22884755|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 387.1425 1158.40567 0.22623 8.7582E-05 -0.91342 -0.00035363 -0.6872 -0.00026604 387.1421130616317 33.162 1.1524 31.016 30.589 31.742 -2.1468 0.075117 -0.00033511 NaN 0.0013812 89 32 4 NaN NaN NaN NaN 0 NaN NaN 0 6352500 + 47278 16549 31461 31481 -0.16719662089417398 TTEWILAL 8 Unmodified _TTEWILAL_ 0 0 0 ENST00000580010.1_1_7:86823316-86823493:+|nuORF ENST00000580010.1_1_7:86823316-86823493:+|nuORF ENST00000580010.1_1_7:86823316-86823493:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1809997558594 3 316.179654 945.517133 NaN NaN NaN NaN NaN NaN NaN 169.9 1 165.03 164.53 165.53 -4.873 0 0 0 0.21486 1 33592 33592 1.6526 0.45928 1 47279 11490 31462 31482 46506 46506 0.042195531829861466 TTGKNVKKT 9 Unmodified _TTGKNVKKT_ 0 0 0 nc|ENSG00000109118|Q96QT6-2|PHF12;nc|ENSG00000109118|Q96QT6-5|PHF12;PHF12|p.P882Qfs*30|1|0.22|ENSG00000109118|chr17:28906891-28906891|G/-|frameshift_variant;ENSG00000109118|ENST00000332830|PHF12;ENST00000582655.5_1_17:27237828-27251299:-|nuORF;ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-3|PHF12 nc|ENSG00000109118|Q96QT6-2|PHF12 nc|ENSG00000109118|Q96QT6-2|PHF12 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 326.19659423828125 3 326.197708 975.571294 NaN NaN NaN NaN NaN NaN NaN 143.1 1 138.2 137.7 138.7 -4.8982 0 0 0 0.23508 1 27620 27620 2.4985 1.0166 1 47280 2518 31463 31483 46507 46507 0.0825314533456094 TTHESFDAED 10 Unmodified _TTHESFDAED_ 0 0 0 REV__AKNAD1|p.K314Nfs*22|1|0.2|ENSG00000162641|chr1:108851723-108851723|T/-|frameshift_variant REV__AKNAD1|p.K314Nfs*22|1|0.2|ENSG00000162641|chr1:108851723-108851723|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3331909179688 2 576.228007 1150.44146 0.25787 0.00014859 0.31647 0.00018236 0.57434 0.00033095 576.2281062318832 63.254 1.1697 59.997 59.436 60.606 -3.2567 79 33 3 0 0 0 0.372 1 11844 11844 0.51642 0 1 4861000 + 47281 13002 31464 31484 46508 46508 -0.12774120525909893 TTHEYEIYF 9 Unmodified _TTHEYEIYF_ 0 0 0 REV__tr|U7SRM7|U7SRM7_FUSNURqc2homologRqcHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rqcHPE=3SV=1 REV__tr|U7SRM7|U7SRM7_FUSNURqc2homologRqcHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rqcHPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2986450195312 2 601.771854 1201.52915 0.62119 0.00037382 -0.53412 -0.00032142 0.087076 5.24E-05 601.7713460718777 30.314 0.38944 28.239 28.074 28.464 -2.0743 16 10 2 0 0 0 0.68435 1 5160 5160 7.2892 0 1 637000 + 47282 25034 31465 31485 46509 46509 -0.06354874864496196 TTHLSSME 8 Unmodified _TTHLSSME_ 0 0 0 sp|P06473|GB_HCMVAEnvelopeglycoproteinBOS=Humancytomegalovirus(strainAD169)OX=10360GN=gBPE=1SV=1 sp|P06473|GB_HCMVAEnvelopeglycoproteinBOS=Humancytomegalovirus(strainAD169)OX=10360GN=gBPE=1SV=1 sp|P06473|GB_HCMVAEnvelopeglycoproteinBOS=Humancytomegalovirus(strainAD169)OX=10360GN=gBPE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.2424011230469 2 453.205292 904.396032 NaN NaN NaN NaN NaN NaN NaN 28.777 1 26.821 26.321 27.321 -1.9561 0 0 0 0.23749 1 5158 5158 0.0082765 0 1 47283 25745 31466 31486 46510 46510 -0.05999017521969563 TTIGAKAISI 10 Unmodified _TTIGAKAISI_ 0 0 0 REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 487.7959289550781 2 487.797675 973.580796 NaN NaN NaN NaN NaN NaN NaN 166.78 1 161.99 161.49 162.49 -4.7898 0 0 0 2.8426 1 33550 33550 5.8681 0 1 + 47284 14687 31467 31487 46511 46511 0.09294913620101397 TTIHQHIP 8 Unmodified _TTIHQHIP_ 0 0 0 ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000004864|Q9UJS0-2|SLC25A13 ENSG00000004864|ENST00000265631|SLC25A13 ENSG00000004864|ENST00000265631|SLC25A13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.1902770996094 3 316.175015 945.503215 NaN NaN NaN NaN NaN NaN NaN 82.953 1 82.953 82.453 83.453 0 0 0 0 0.21486 1 16171 16171 3.5965 0 1 47285 978 31468 31488 46512 46512 0.028283204745775947 TTIKPFPV 8 Unmodified _TTIKPFPV_ 0 0 0 nc|ENSG00000112303|O95498-6|VNN2;ENSG00000112303|ENST00000326499|VNN2 nc|ENSG00000112303|O95498-6|VNN2 nc|ENSG00000112303|O95498-6|VNN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 451.7715759277344 2 451.770929 901.527304 NaN NaN NaN NaN NaN NaN NaN 132.48 1 132.48 131.98 132.98 0 0 0 0 0.2343 1 26192 26192 0.62683 0.50396 1 47286 2686 31469 31489 46513 46513 0.07260160908242597 TTISKVSQV 9 Unmodified _TTISKVSQV_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7799072265625 2 481.779482 961.544411 NaN NaN NaN NaN NaN NaN NaN 42.979 1 40.373 39.873 40.873 -2.606 0 0 0 0.19687 1 7744 7744 8.1555 5.5243 1 47287 1353 31470 31490 46514 46514 0.062100367233938414 TTISKVSQV 9 Unmodified _TTISKVSQV_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7792663574219 2 481.779482 961.544411 NaN NaN NaN NaN NaN NaN NaN 137.68 1 132.84 132.34 133.34 -4.84 0 0 0 0.16001 1 26528 26528 2.8827 1.1404 1 47288 1353 31470 31490 46515 46515 0.062100367233938414 TTKEEAQL 8 Unmodified _TTKEEAQL_ 0 0 0 RBM46|p.R119I|1|0.24|ENSG00000151962|chr4:154798015-154798015|G/T|missense_variant;RBM46|p.N183Kfs*10|1|0.27|ENSG00000151962|chr4:154798202-154798203|-/A|frameshift_variant;RBM46|p.T343Lfs*2|1|0.28|ENSG00000151962|chr4:154799185-154799185|A/-|frameshift_variant;nc|ENSG00000151962|Q8TBY0-2|RBM46;nc|ENSG00000151962|Q8TBY0-3|RBM46;ENSG00000151962|ENST00000281722|RBM46 RBM46|p.R119I|1|0.24|ENSG00000151962|chr4:154798015-154798015|G/T|missense_variant RBM46|p.R119I|1|0.24|ENSG00000151962|chr4:154798015-154798015|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2384033203125 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 68.118 1 68.118 67.618 68.618 0 0 0 0 0.22695 1 13169 13169 1.7423 0 1 47289 4898 31471 31491 46516 46516 0.0033318441828669165 TTKEWALA 8 Unmodified _TTKEWALA_ 0 0 0 REV__ENSG00000198759|ENST00000361306|EGFL6 REV__ENSG00000198759|ENST00000361306|EGFL6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24853515625 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 71.344 1 68.095 67.595 68.595 -3.2492 0 0 0 0.19342 1 13889 13889 26.884 0 1 + 47290 19446 31472 31492 46517 46517 0.018580960061285623 TTKGSAPPGL 10 Unmodified _TTKGSAPPGL_ 0 0 0 REV__ENST00000477396.5_1_9:135702810-135749757:-|nuORF REV__ENST00000477396.5_1_9:135702810-135749757:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2591552734375 2 464.758549 927.502546 -0.23281 -0.0001082 -0.31938 -0.00014844 -0.5522 -0.00025664 464.7584600241275 104.21 0.50955 99.991 99.621 100.13 -4.2183 24 14 2 0 0 0 0.59928 1 20452 20452 19.257 4.4187 1 1281900 + 47291 17795 31473 31493 46518 46518 0.03589481034839537 TTKKKKKKK 9 Unmodified _TTKKKKKKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;chrX:154776324-154776804|185|14.46|0.53|4.78|+|1|DKC1,DKC1|1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 373.3215026855469 3 373.264164 1116.77066 NaN NaN NaN NaN NaN NaN NaN 72.129 1 68.819 68.319 69.319 -3.3107 0 0 0 0.23508 1 14056 14056 0 0 1 47292 3644 31474 31494 46519 46519 0.21694825353119995 TTKLITKIK 9 Unmodified _TTKLITKIK_ 0 0 0 tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1 tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1 tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 349.187255859375 3 349.237504 1044.69068 NaN NaN NaN NaN NaN NaN NaN 33.968 1 31.752 31.252 32.252 -2.2158 0 0 0 0.19635 1 5937 5937 0 0 1 47293 26051 31475 31495 46520 46520 0.1701233895923906 TTKLLQDL 8 Unmodified _TTKLLQDL_ 0 0 0 ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9;ENST00000497410.5_1_5:864585-865736:-|nuORF;nc|ENSG00000028310|Q9H8M2-2|BRD9;ENST00000495794.5_1_5:864585-881375:-|nuORF ENSG00000028310|ENST00000467963|BRD9;ENST00000495794.5_1_5:864585-881375:-|nuORF ENSG00000028310|ENST00000467963|BRD9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.20428466796875 3 311.186809 930.538597 NaN NaN NaN NaN NaN NaN NaN 93.753 1 93.753 93.253 94.253 0 0 0 0 0.21486 1 18351 18351 1.6526 1.1943 1 47294 1149;10569 31476 31496 46521 46521 0.07054938211717854 TTKLLQDL 8 Unmodified _TTKLLQDL_ 0 0 0 ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9;ENST00000497410.5_1_5:864585-865736:-|nuORF;nc|ENSG00000028310|Q9H8M2-2|BRD9;ENST00000495794.5_1_5:864585-881375:-|nuORF ENSG00000028310|ENST00000467963|BRD9;ENST00000495794.5_1_5:864585-881375:-|nuORF ENSG00000028310|ENST00000467963|BRD9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2048034667969 3 311.186809 930.538597 NaN NaN NaN NaN NaN NaN NaN 120 1 120 119.5 120.5 0 0 0 0 0.21486 1 23650 23650 1.4819 1.0236 1 47295 1149;10569 31476 31496 46522 46522 0.07054938211717854 TTKLLQDL 8 Unmodified _TTKLLQDL_ 0 0 0 ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9;ENST00000497410.5_1_5:864585-865736:-|nuORF;nc|ENSG00000028310|Q9H8M2-2|BRD9;ENST00000495794.5_1_5:864585-881375:-|nuORF ENSG00000028310|ENST00000467963|BRD9;ENST00000495794.5_1_5:864585-881375:-|nuORF ENSG00000028310|ENST00000467963|BRD9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1844177246094 3 311.186809 930.538597 NaN NaN NaN NaN NaN NaN NaN 108.23 1 103.91 103.41 104.41 -4.32 0 0 0 0.21486 1 21323 21323 3.9444 2.2918 1 47296 1149;10569 31476 31496 46523 46523 0.07054938211717854 TTKRKVAK 8 Unmodified _TTKRKVAK_ 0 0 0 REV__MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant REV__MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.22125244140625 3 311.206426 930.597449 NaN NaN NaN NaN NaN NaN NaN 98.151 1 98.151 97.651 98.651 0 0 0 0 0.21486 1 19237 19237 0.40072 0 1 + 47297 15590 31477 31497 46524 46524 0.12937459296699672 TTKRRKKK 8 Unmodified _TTKRRKKK_ 0 0 0 REV__ENSG00000011201|ENST00000262648|ANOS1 REV__ENSG00000011201|ENST00000262648|ANOS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 349.20172119140625 3 349.236608 1044.688 NaN NaN NaN NaN NaN NaN NaN 22.72 1 20.932 20.432 21.432 -1.7886 0 0 0 0.2396 1 3622 3622 0.0082765 0.004896 1 + 47298 13931 31478 31498 46525 46525 0.16743928344976666 TTKSSDCNSIF 11 Unmodified _TTKSSDCNSIF_ 0 0 0 REV__ENSG00000109586|ENST00000265000|GALNT7 REV__ENSG00000109586|ENST00000265000|GALNT7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2733154296875 2 601.771528 1201.5285 0.62119 0.00037382 0.007557 4.5476E-06 0.62875 0.00037836 601.7713460718777 30.314 0.38944 28.239 28.074 28.464 -2.0743 16 10 2 0 0 0 0.57511 1 5181 5181 19.362 3.2128 1 637000 + 47299 15167 31479 31499 46526 46526 -0.06420037575844617 TTKVIFVFNNQ 11 Unmodified _TTKVIFVFNNQ_ 0 0 0 REV__ENST00000496390.5_1_X:153928333-153979808:-|nuORF REV__ENST00000496390.5_1_X:153928333-153979808:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2357177734375 3 437.574955 1309.70304 NaN NaN NaN NaN NaN NaN NaN 103.36 1 99.178 98.678 99.678 -4.1861 0 0 0 0.22814 1 20321 20321 9.7643 1.8189 1 + 47300 17407 31480 31500 46527 46527 0.060573306316882736 TTKVIFVFNNQ 11 Unmodified _TTKVIFVFNNQ_ 0 0 0 REV__ENST00000496390.5_1_X:153928333-153979808:-|nuORF REV__ENST00000496390.5_1_X:153928333-153979808:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23590087890625 3 437.574955 1309.70304 0.42555 0.00018621 -0.58238 -0.00025483 -0.15683 -6.8624E-05 437.90886920539003 103.22 0.35385 99.194 98.957 99.311 -4.0212 14 9 2 0 0 0 0.96104 1 19812 19812 7.0371 1.1689 1 1281700 + 47301 17407 31480 31500 46528 46528 0.060573306316882736 TTLGAAPSR 9 Unmodified _TTLGAAPSR_ 0 0 0 ENST00000462590.1_1_X:153577879-153578094:-|nuORF ENST00000462590.1_1_X:153577879-153578094:-|nuORF ENST00000462590.1_1_X:153577879-153578094:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22747802734375 2 437.243067 872.47158 NaN NaN NaN NaN NaN NaN NaN 27.55 1 25.768 25.268 26.268 -1.7821 0 0 0 0.22621 1 4899 4899 15.847 1.0089 1 47302 10086 31481 31501 46529 46529 0.03024327720618203 TTLKGAKA 8 Unmodified _TTLKGAKA_ 0 0 0 tr|U7T614|U7T614_FUSNU7,8-dihydro-8-oxoguaninetriphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00337PE=4SV=1 tr|U7T614|U7T614_FUSNU7,8-dihydro-8-oxoguaninetriphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00337PE=4SV=1 tr|U7T614|U7T614_FUSNU7,8-dihydro-8-oxoguaninetriphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00337PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.2458190917969 2 395.245078 788.475603 NaN NaN NaN NaN NaN NaN NaN 143.27 1 138.62 138.12 139.12 -4.656 0 0 0 0.22628 1 28336 28336 2.643 0 1 47303 26484 31482 31502 46530 46530 0.07290417214335321 TTLKTISR 8 Unmodified _TTLKTISR_ 0 0 0 ENST00000484159.5_1_9:6434093-6493966:+|nuORF;ENSG00000147854|ENST00000276893|UHRF2;UHRF2|p.G427Afs*39|1|0.18|ENSG00000147854|chr9:6481759-6481759|G/-|frameshift_variant;nc|ENSG00000147854|Q96PU4-2|UHRF2 ENST00000484159.5_1_9:6434093-6493966:+|nuORF ENST00000484159.5_1_9:6434093-6493966:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 307.2240905761719 3 307.190553 918.549831 NaN NaN NaN NaN NaN NaN NaN 13.67 1 12.497 11.997 12.997 -1.173 0 0 0 0.21486 1 1794 1794 0 0 1 47304 4719 31483 31503 46531 46531 0.08729760305868695 TTLLLKNL 8 Unmodified _TTLLLKNL_ 0 0 0 REV__ENST00000528393.1_1_11:79699092-79699545:+|nuORF REV__ENST00000528393.1_1_11:79699092-79699545:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386474609375 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 90.547 1 90.547 90.047 91.047 0 0 0 0 0.21486 1 17690 17690 5.7604 0 1 + 47305 22723 31484 31504 46532 46532 0.11936118971038923 TTLLVDLST 9 Unmodified _TTLLVDLST_ 0 0 0 REV__nc|ENSG00000164270|Q13639-7|HTR4 REV__nc|ENSG00000164270|Q13639-7|HTR4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7728576660156 2 481.773865 961.533177 NaN NaN NaN NaN NaN NaN NaN 43.003 1 40.284 39.784 40.784 -2.7191 0 0 0 0.19679 1 8053 8053 1.2148 0 1 + 47306 17666 31485 31505 46533 46533 0.05087214629236314 TTLNNIDQGWF 11 Unmodified _TTLNNIDQGWF_ 0 0 0 REV__PDPR|p.E826Kfs*5|1|0.12|ENSG00000090857|chr16:70156711-70156711|G/-|frameshift_variant REV__PDPR|p.E826Kfs*5|1|0.12|ENSG00000090857|chr16:70156711-70156711|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22845458984375 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 102.09 1 97.907 97.407 98.407 -4.1861 0 0 0 0.22632 1 20063 20063 0.00056442 0 1 + 47307 14553 31486 31506 46534 46534 -0.026887096788186682 TTLTLGGG 8 Unmodified _TTLTLGGG_ 0 0 0 REV__nc|ENSG00000118058|Q03164-2|KMT2A REV__nc|ENSG00000118058|Q03164-2|KMT2A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017822265625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 117.23 1 112.65 112.15 113.15 -4.5815 0 0 0 0.21486 1 22494 22494 2.5775 0 1 + 47308 15538 31487 31507 46535 46535 0.01566162534970772 TTLWRRTWVPG 11 Unmodified _TTLWRRTWVPG_ 0 0 0 sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.229736328125 3 458.254328 1371.74115 NaN NaN NaN NaN NaN NaN NaN 88.629 1 84.634 84.134 85.134 -3.9953 0 0 0 0.22632 1 16885 16885 2.732 2.4334 1 47309 25767 31488 31508 46536 46536 0.07015261336960066 TTMDWVKVMKD 11 Unmodified _TTMDWVKVMKD_ 0 0 0 REV__ENSG00000127580|ENST00000293883|WDR24 REV__ENSG00000127580|ENST00000293883|WDR24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 452.7442321777344 3 451.889558 1352.64684 0.19147 8.6524E-05 0.45567 0.00020591 0.64714 0.00029244 451.8896218030967 93.108 0.61431 88.965 88.696 89.31 -4.1435 41 17 3 0 0 0 0.65903 1 17728 17728 0.172 0 1 2580800 + 47310 15892 31489 31509 46537 46537 -0.015373815916973399 TTMDWVKVMKD 11 Unmodified _TTMDWVKVMKD_ 0 0 0 REV__ENSG00000127580|ENST00000293883|WDR24 REV__ENSG00000127580|ENST00000293883|WDR24 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 451.889558 1352.64684 0.11362 5.1342E-05 0.22929 0.00010361 0.34291 0.00015496 451.8896677727359 89.34 0.49558 89.34 89.034 89.53 0 0.24899 -0.00049429 NaN 0.172 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3320900 + 47311 15892 31489 31509 -0.015373815916973399 TTMDWVKVMKD 11 Unmodified _TTMDWVKVMKD_ 0 0 0 REV__ENSG00000127580|ENST00000293883|WDR24 REV__ENSG00000127580|ENST00000293883|WDR24 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 451.889558 1352.64684 -0.11698 -5.2861E-05 0.79193 0.00035787 0.67495 0.000305 451.88982716610064 93.013 0.72777 89.022 88.659 89.387 -3.9907 -0.06892 0.00026846 NaN 0.172 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4119100 + 47312 15892 31489 31509 -0.015373815916973399 TTMDWVKVMKD 11 Unmodified _TTMDWVKVMKD_ 0 0 0 REV__ENSG00000127580|ENST00000293883|WDR24 REV__ENSG00000127580|ENST00000293883|WDR24 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 451.889558 1352.64684 0.19147 8.6524E-05 0.45567 0.00020591 0.64714 0.00029244 451.8896218030967 93.108 0.61431 88.965 88.696 89.31 -4.1435 -0.1263 -0.0001874 NaN 0.172 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2580800 + 47313 15892 31489 31509 -0.015373815916973399 TTMDWVKVMKD 11 Unmodified _TTMDWVKVMKD_ 0 0 0 REV__ENSG00000127580|ENST00000293883|WDR24 REV__ENSG00000127580|ENST00000293883|WDR24 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 451.889558 1352.64684 0.025678 1.1603E-05 0.96767 0.00043728 0.99334 0.00044888 451.88981647376875 92.881 0.61014 89.037 88.65 89.26 -3.844 -0.05377 0.0005067 NaN 0.172 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2781100 + 47314 15892 31489 31509 -0.015373815916973399 TTMRASISI 9 Unmodified _TTMRASISI_ 0 0 0 REV__ENST00000600610.5_1_19:17449524-17450024:+|nuORF REV__ENST00000600610.5_1_19:17449524-17450024:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2631530761719 2 490.265684 978.516816 NaN NaN NaN NaN NaN NaN NaN 66.256 1 63.209 62.709 63.709 -3.047 0 0 0 0.19692 1 12835 12835 1.2148 0.96335 1 + 47315 23412 31490 31510 46538 46538 0.02669810191491706 TTMRASISI 9 Unmodified _TTMRASISI_ 0 0 0 REV__ENST00000600610.5_1_19:17449524-17450024:+|nuORF REV__ENST00000600610.5_1_19:17449524-17450024:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26556396484375 2 490.265684 978.516816 NaN NaN NaN NaN NaN NaN NaN 169.1 1 164.23 163.73 164.73 -4.873 0 0 0 0.18272 1 33383 33383 1.2148 1.087 1 + 47316 23412 31490 31510 46539 46539 0.02669810191491706 TTMRTLWA 8 Unmodified _TTMRTLWA_ 0 0 0 REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant REV__UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26287841796875 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 113.39 1 109.12 108.62 109.62 -4.2725 0 0 0 0.22757 1 21836 21836 0.62683 0.21856 1 + 47317 15888 31491 31511 46540 46540 0.005578448826327076 TTNLRPTTY 9 Unmodified _TTNLRPTTY_ 0 0 0 nc|ENSG00000128683|Q99259-4|GAD1;nc|ENSG00000128683|Q99259-3|GAD1;GAD1|p.W516Gfs*30|1|0.16|ENSG00000128683|chr2:170858824-170858824|T/-|frameshift_variant;ENSG00000128683|ENST00000358196|GAD1 nc|ENSG00000128683|Q99259-4|GAD1 nc|ENSG00000128683|Q99259-4|GAD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2630615234375 2 533.780013 1065.54547 0.15195 8.1105E-05 0.18638 9.9488E-05 0.33833 0.00018059 533.7799347366453 92.47 0.6445 88.661 88.208 88.853 -3.8083 27 18 2 0 0 0 0.72864 1 17669 17669 23.148 2.5675 1 2781600 47318 12312 31492 31512 46541 46541 0.015322510922715082 TTPDGDLSL 9 Unmodified _TTPDGDLSL_ 0 0 0 REV__ENSG00000110395|ENST00000264033|CBL REV__ENSG00000110395|ENST00000264033|CBL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2263488769531 2 459.724372 917.434192 0.052941 2.4338E-05 0.35869 0.0001649 0.41164 0.00018924 459.72442758881283 97.761 0.76265 93.841 93.574 94.336 -3.9194 47 21 3 0 0 0 0.22334 1 18849 18849 36.044 0 1 9069000 + 47319 15199 31493 31513 46542 46542 -0.027828083356666866 TTPDVTIRY 9 Unmodified _TTPDVTIRY_ 0 0 0 REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2835693359375 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 80.738 1 77.05 76.55 77.55 -3.6879 0 0 0 0.18064 1 15393 15393 26.268 2.2476 1 + 47320 13475 31494 31514 46543 46543 0.020531352350417365 TTPERRRRKRR 11 Unmodified _TTPERRRRKRR_ 0 0 0 REV__ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant REV__ZNF428|p.Q121Rfs*113|1|0.43|ENSG00000131116|chr19:43607823-43607823|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 504.63214111328125 3 504.641579 1510.90291 NaN NaN NaN NaN NaN NaN NaN 137.4 1 132.47 131.97 132.97 -4.9216 0 0 0 0.22632 1 26413 26413 0.094841 0.094277 1 + 47321 25577 31495 31515 46544 46544 0.16789243142602572 TTPGGRTLERD 11 Unmodified _TTPGGRTLERD_ 0 0 0 ENSG00000105613|ENST00000251472|MAST1 ENSG00000105613|ENST00000251472|MAST1 ENSG00000105613|ENST00000251472|MAST1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.275146484375 2 601.809833 1201.60511 0.48379 0.00029115 -0.31161 -0.00018753 0.17217 0.00010362 601.8097182212714 33.428 0.34295 31.213 31.01 31.353 -2.2158 13 9 2 0 0 0 0.56992 1 5810 5810 19.626 5.7199 1 792280 47322 2322 31496 31516 46545 46545 0.01237522035648908 TTPGGRTLERD 11 Unmodified _TTPGGRTLERD_ 0 0 0 ENSG00000105613|ENST00000251472|MAST1 ENSG00000105613|ENST00000251472|MAST1 ENSG00000105613|ENST00000251472|MAST1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 601.809833 1201.60511 0.41287 0.00024847 -0.37639 -0.00022651 0.036489 2.1959E-05 601.8096419449724 31.126 0.28248 31.126 30.932 31.215 0 -0.076284 0.00013011 NaN 19.626 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1017800 47323 2322 31496 31516 0.01237522035648908 TTPGGRTLERD 11 Unmodified _TTPGGRTLERD_ 0 0 0 ENSG00000105613|ENST00000251472|MAST1 ENSG00000105613|ENST00000251472|MAST1 ENSG00000105613|ENST00000251472|MAST1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 601.809833 1201.60511 1.0076 0.00060636 -0.8357 -0.00050293 0.17187 0.00010343 601.8093601851481 33.516 0.31329 31.198 30.975 31.288 -2.3175 -0.0039761 -0.00042272 NaN 19.626 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1081700 47324 2322 31496 31516 0.01237522035648908 TTPNNFTL 8 Unmodified _TTPNNFTL_ 0 0 0 REV__MLLT1|p.Q461Rfs*46|2|0.33|ENSG00000130382|chr19:6213965-6213965|G/-|frameshift_variant REV__MLLT1|p.Q461Rfs*46|2|0.33|ENSG00000130382|chr19:6213965-6213965|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7483825683594 2 454.229625 906.444697 0.25047 0.00011377 2.777 0.0012614 3.0274 0.0013751 454.2295858999726 34.426 0.51244 34.426 34.108 34.62 0 23 14 3 0 0 0 0.97173 1 6252 6252 4.3292 0 1 602280 + 47325 16002 31497 31517 46546 46546 -0.012267808905676247 TTPQMPQL 8 Unmodified _TTPQMPQL_ 0 0 0 REV__ZSWIM3|p.V130M|1|0.07|ENSG00000132801|chr20:45876946-45876946|G/A|missense_variant REV__ZSWIM3|p.V130M|1|0.07|ENSG00000132801|chr20:45876946-45876946|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2339782714844 2 458.233853 914.453153 NaN NaN NaN NaN NaN NaN NaN 76.83 1 76.83 76.33 77.33 0 0 0 0 0.17894 1 14929 14929 32.117 1.4804 1 + 47326 25600 31498 31518 46547 46547 -0.0074955024559812955 TTPQNVPSRS 10 Unmodified _TTPQNVPSRS_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7798461914062 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 56.909 1 53.733 53.233 54.233 -3.1761 0 0 0 2.8426 1 10601 10601 0.013265 0 1 47327 6931 31499 31519 46548 46548 0.0071846546118194965 TTPRVAAL 8 Unmodified _TTPRVAAL_ 0 0 0 REV__ENST00000482031.5_1_2:238973007-238991399:+|nuORF REV__ENST00000482031.5_1_2:238973007-238991399:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.1695861816406 2 414.750527 827.486502 0.13359 5.5407E-05 1.3426 0.00055683 1.4762 0.00061224 414.75056720839154 102.4 1.0286 98.376 97.63 98.659 -4.0212 44 29 2 0 0 0 0.7226 1 19698 19698 1.4551 0 1 1389900 + 47328 16107 31500 31520 46549 46549 0.06585819588610775 TTQEITQV 8 Unmodified _TTQEITQV_ 0 0 0 ENST00000468590.1_1_20:57227170-57245628:+|nuORF ENST00000468590.1_1_20:57227170-57245628:+|nuORF ENST00000468590.1_1_20:57227170-57245628:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2390441894531 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 71.376 1 67.909 67.409 68.409 -3.467 0 0 0 0.20135 1 13527 13527 24.021 0 1 47329 10171 31501 31521 46550 46550 0.0033318441827532297 TTQKLVLEY 9 Unmodified _TTQKLVLEY_ 0 0 0 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7811889648438 2 547.808239 1093.60193 0.20353 0.0001115 -0.080429 -4.4059E-05 0.12311 6.7438E-05 547.807954768878 101.88 0.58282 97.696 97.445 98.027 -4.1861 23 16 2 0 0 0 0.17734 1 20060 20060 40.239 11.745 1 1561300 47330 4042 31502 31522 46551 46551 0.05886878928936312 TTQLRQRH 8 Unmodified _TTQLRQRH_ 0 0 0 REV__ENST00000345356.10_1_6:75823022-75823370:-|nuORF REV__ENST00000345356.10_1_6:75823022-75823370:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.1954040527344 3 347.196701 1038.56827 NaN NaN NaN NaN NaN NaN NaN 176.15 1 171.36 170.86 171.86 -4.7898 0 0 0 0.21486 1 36017 36017 1.6526 0 1 + 47331 20749 31503 31523 46552 46552 0.05053315000395742 TTRCWAET 8 Unmodified _TTRCWAET_ 0 0 0 REV__CLASRP|p.P95Lfs*81|3|0.29|ENSG00000104859|chr19:45052871-45052871|C/-|frameshift_variant REV__CLASRP|p.P95Lfs*81|3|0.29|ENSG00000104859|chr19:45052871-45052871|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1480407714844 3 323.148248 966.422915 NaN NaN NaN NaN NaN NaN NaN 121.49 1 116.96 116.46 117.46 -4.5305 0 0 0 0.21486 1 23392 23392 1.4819 0 1 + 47332 13442 31504 31524 46553 46553 -0.061639089107984546 TTRFRVSL 8 Unmodified _TTRFRVSL_ 0 0 0 REV__nc|ENSG00000136758|Q96TA2-3|YME1L1 REV__nc|ENSG00000136758|Q96TA2-3|YME1L1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.265869140625 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 95.619 1 91.428 90.928 91.928 -4.1911 0 0 0 0.23584 1 18250 18250 1.7423 0 1 + 47333 16347 31505 31525 46554 46554 0.07092582400002811 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.96392822265625 4 350.987572 1399.92118 -0.93123 -0.00032685 -0.70979 -0.00024913 -1.641 -0.00057598 350.9873253332204 10.736 1.5744 9.8325 8.9696 10.544 -0.90401 68 44 2 0 0 0 0.82733 1 1289 1289 0 0 1 316510 + 47334 22757 31506 31526 46555 46555 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.0475158691406 4 350.987572 1399.92118 -0.93122 -0.00032685 -0.71108 -0.00024958 -1.6423 -0.00057643 350.98732810432847 11.812 0.70026 10.908 10.544 11.244 -0.90401 29 19 2 0 0 0 0.82733 1 1589 1589 0 0 1 427050 + 47335 22757 31506 31526 46556 46556 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.0773010253906 4 350.987572 1399.92118 -0.93126 -0.00032686 -0.53102 -0.00018638 -1.4623 -0.00051324 351.2380697418677 12.672 1.485 11.662 11.139 12.624 -1.0098 70 42 2 0 0 0 0.82733 1 1675 1675 0 0 1 328890 + 47336 22757 31506 31526 46557 46557 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.07818603515625 4 350.987572 1399.92118 -0.93009 -0.00032645 -0.55577 -0.00019507 -1.4859 -0.00052152 350.98739670898624 14.511 1.4368 13.397 12.519 13.956 -1.1142 76 40 2 0 0 0 0.82733 1 2137 2137 0 0 1 288600 + 47337 22757 31506 31526 46558 46558 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.07073974609375 4 350.987572 1399.92118 -0.32089 -0.00011263 -0.85963 -0.00030172 -1.1805 -0.00041435 350.9872924031312 33.428 1.1478 31.111 30.833 31.981 -2.3175 48 32 2 0 0 0 0.82733 1 6216 6216 0 0 1 272160 + 47338 22757 31506 31526 46559 46559 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.8493957519531 4 350.987572 1399.92118 -0.5094 -0.00017879 -0.98835 -0.0003469 -1.4977 -0.00052569 350.98728155380314 17.6 2.2262 16.289 14.776 17.002 -1.3109 91 63 2 0 0 0 0.89136 1 2636 2636 0 0 1 287940 + 47339 22757 31506 31526 46560 46560 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.4772644042969 4 350.987572 1399.92118 -0.68702 -0.00024114 -0.76231 -0.00026756 -1.4493 -0.0005087 350.98731625072026 36.295 1.2542 33.902 33.593 34.847 -2.3938 50 35 2 0 0 0 0.89136 1 6733 6733 0 0 1 591190 + 47340 22757 31506 31526 46561 46561 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.8493957519531 4 350.987572 1399.92118 -0.78641 -0.00027602 -0.58998 -0.00020707 -1.3764 -0.00048309 350.9873995231683 16.14 1.888 14.924 13.889 15.777 -1.2159 76 53 2 0 0 0 0.89136 1 2636 2636 0 0 1 422530 + 47341 22757 31506 31526 46562 46562 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.2320556640625 4 350.987572 1399.92118 -0.67037 -0.00023529 -0.74332 -0.0002609 -1.4137 -0.00049619 350.98734553970917 9.1515 2.0025 8.087 7.3217 9.3243 -1.0645 81 56 2 0 0 0 0.82733 1 828 828 0 0 1 584460 + 47342 22757 31506 31526 46563 46563 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.0767822265625 4 350.987572 1399.92118 -0.67037 -0.00023529 -0.74332 -0.0002609 -1.4137 -0.00049619 350.98734553970917 9.1515 2.0025 8.087 7.3217 9.3243 -1.0645 81 56 2 0 0 0 0.96228 1 897 897 0 0 1 584460 + 47343 22757 31506 31526 46564 46564 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 351.0588073730469 4 350.987572 1399.92118 -0.16636 -5.8391E-05 -1.241 -0.00043558 -1.4074 -0.00049397 350.9871926755732 179.09 1.8763 174.18 173.23 175.1 -4.9091 94 53 2 0 0 0 0.96228 1 35882 35882 0 0 1 385600 + 47344 22757 31506 31526 46565 46565 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 351.1798095703125 4 350.987572 1399.92118 -1.1502 -0.00040369 -0.3517 -0.00012344 -1.5019 -0.00052714 351.2381055473593 23.187 1.2652 21.399 20.679 21.944 -1.7886 51 36 2 0 0 0 0.89136 1 3572 3572 0 0 1 243570 + 47345 22757 31506 31526 46566 46566 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 350.987572 1399.92118 -0.38903 -0.00013654 -0.92865 -0.00032595 -1.3177 -0.00046249 350.98728381969516 15.941 1.6927 15.941 15.087 16.78 0 -0.17394 3.2379E-05 NaN 0 71 48 2 NaN NaN NaN NaN 0 NaN NaN 0 298450 + 47346 22757 31506 31526 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 350.987572 1399.92118 -0.40722 -0.00014293 -1.0443 -0.00036655 -1.4515 -0.00050947 350.98728898898395 14.884 0.52657 14.884 14.525 15.052 0 -0.046205 -0.00036692 NaN 0 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 278990 + 47347 22757 31506 31526 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 350.987572 1399.92118 -0.93009 -0.00032645 -0.55577 -0.00019507 -1.4859 -0.00052152 350.98739670898624 14.511 1.4368 13.397 12.519 13.956 -1.1142 -0.050366 0.0002343 NaN 0 76 40 2 NaN NaN NaN NaN 0 NaN NaN 0 288600 + 47348 22757 31506 31526 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 350.987572 1399.92118 -0.93123 -0.00032685 -0.70979 -0.00024913 -1.641 -0.00057598 350.9873253332204 10.736 1.5744 9.8325 8.9696 10.544 -0.90401 0 0 NaN 0 68 44 2 NaN NaN NaN NaN 0 NaN NaN 0 316510 + 47349 22757 31506 31526 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 350.987572 1399.92118 -0.51812 -0.00018185 -0.82874 -0.00029088 -1.3469 -0.00047273 350.98735014727305 16.205 1.7573 14.983 14.301 16.058 -1.2219 0.052354 -6.4239E-05 NaN 0 78 50 2 NaN NaN NaN NaN 0 NaN NaN 0 276460 + 47350 22757 31506 31526 0.23721985064617002 TTRKAKKKKRR 11 Unmodified _TTRKAKKKKRR_ 0 0 0 REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 350.987572 1399.92118 -0.61162 -0.00021467 -0.85949 -0.00030167 -1.4711 -0.00051634 351.2379248848062 14.671 0.87055 13.498 13.107 13.978 -1.173 0.050366 -0.0001921 NaN 0 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 304010 + 47351 22757 31506 31526 0.23721985064617002 TTRKVRKKY 9 Unmodified _TTRKVRKKY_ 0 0 0 REV__tr|U7T3D1|U7T3D1_FUSNUSmallribosomalsubunitproteinuS17OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsQPE=3SV=1 REV__tr|U7T3D1|U7T3D1_FUSNUSmallribosomalsubunitproteinuS17OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsQPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2684326171875 2 590.369664 1178.72478 NaN NaN NaN NaN NaN NaN NaN 154.23 1 149.01 148.51 149.51 -5.2209 0 0 0 0.19624 1 29899 29899 0.073264 0 1 + 47352 25352 31507 31527 46567 46567 0.14256180170900734 TTSDWDAVNS 10 Unmodified _TTSDWDAVNS_ 0 0 0 ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant;ZNF462|p.P1613Rfs*11|1|0.4|ENSG00000148143|chr9:106928746-106928746|C/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.R1168Gfs*9|1|0.38|ENSG00000148143|chr9:106927409-106927409|C/-|frameshift_variant ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7927856445312 2 548.233093 1094.45163 0.11376 6.2364E-05 -1.275 -0.00069899 -1.1612 -0.00063662 548.2324030980769 105.56 0.63646 101.18 100.84 101.47 -4.3764 25 17 2 0 0 0 0.78938 1 20243 20243 21.537 8.0291 1 1366000 47353 4728 31508 31528 46568 46568 -0.09181512800682867 TTSGGSGG 8 Unmodified _TTSGGSGG_ 0 0 0 REV__ENST00000339738.9_1_20:30458201-30458438:-|nuORF REV__ENST00000339738.9_1_20:30458201-30458438:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7610473632812 1 623.26311 622.255833 0.60651 0.00037802 2.1312 0.0013283 2.7377 0.0017063 623.2636565417897 69.772 0.23991 66.192 66.002 66.242 -3.5798 9 6 2 0 0 0 0.9003 1 13146 13146 0 0 1 911190 + 47354 20701 31509 31529 46569 46569 -0.07040433464032958 TTSGVTTPGV 10 Unmodified _TTSGVTTPGV_ 0 0 0 REV__ENSG00000215182|ENST00000621226|MUC5AC REV__ENSG00000215182|ENST00000621226|MUC5AC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2388610839844 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 68.372 1 68.372 67.872 68.872 0 0 0 0 0.19577 1 13218 13218 29.082 0 1 + 47355 19683 31510 31530 46570 46570 0.0033318441828669165 TTSLWSSRQ 9 Unmodified _TTSLWSSRQ_ 0 0 0 REV__ENST00000418970.6_1_2:7055976-7056084:-|nuORF REV__ENST00000418970.6_1_2:7055976-7056084:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.268798828125 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 15.724 1 14.502 14.002 15.002 -1.2219 0 0 0 0.23508 1 2222 2222 6.7232 0.51738 1 + 47356 21489 31511 31531 46571 46571 -0.004609195675357114 TTSPSHPPQTV 11 Unmodified _TTSPSHPPQTV_ 0 0 0 ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1 ENSG00000183762|ENST00000400335|KREMEN1 ENSG00000183762|ENST00000400335|KREMEN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3179931640625 2 576.288202 1150.56185 0.55986 0.00032264 -0.74201 -0.00042761 -0.18215 -0.00010497 576.2879384110348 43.936 0.95749 43.936 43.433 44.39 0 57 27 4 0 0 0 0.47533 1 8260 8260 35.612 0 1 15356000 47357 6865 31512 31532 46572 46572 -0.0074066774163839 TTSPSHPPQTV 11 Unmodified _TTSPSHPPQTV_ 0 0 0 ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1 ENSG00000183762|ENST00000400335|KREMEN1 ENSG00000183762|ENST00000400335|KREMEN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3341674804688 2 576.288202 1150.56185 -0.030485 -1.7568E-05 -0.040095 -2.3106E-05 -0.07058 -4.0674E-05 576.2883512119017 46.861 0.76078 44.02 43.728 44.489 -2.8409 42 21 3 0 0 0 0.6627 1 8873 8873 35.612 10.621 1 14483000 47358 6865 31512 31532 46573 46573 -0.0074066774163839 TTSPSHPPQTV 11 Unmodified _TTSPSHPPQTV_ 0 0 0 ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1 ENSG00000183762|ENST00000400335|KREMEN1 ENSG00000183762|ENST00000400335|KREMEN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3125 2 576.288202 1150.56185 0.10522 6.0639E-05 -0.17094 -9.851E-05 -0.065717 -3.7872E-05 576.2883043047059 46.959 0.58889 44.017 43.684 44.273 -2.9421 39 16 3 0 0 0 0.33358 1 8530 8530 59.368 13.669 1 10980000 47359 6865 31512 31532 46574 46574 -0.0074066774163839 TTSPSHPPQTV 11 Unmodified _TTSPSHPPQTV_ 0 0 0 ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1 ENSG00000183762|ENST00000400335|KREMEN1 ENSG00000183762|ENST00000400335|KREMEN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33447265625 2 576.288202 1150.56185 -0.086041 -4.9585E-05 0.049725 2.8656E-05 -0.036316 -2.0929E-05 576.2883788990326 46.942 0.76757 44.011 43.546 44.313 -2.9312 53 21 4 0 0 0 0.35633 1 8534 8534 51.415 18.63 1 10480000 47360 6865 31512 31532 46575 46575 -0.0074066774163839 TTSQDSFPSSF 11 Unmodified _TTSQDSFPSSF_ 0 0 0 REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2889404296875 2 602.26185 1202.50915 NaN NaN NaN NaN NaN NaN NaN 115.45 1 115.45 114.95 115.95 0 0 0 0 0.22632 1 22722 22722 0.58532 0.41332 1 + 47361 17048 31513 31533 46576 46576 -0.08400670595096926 TTSRWNSK 8 Unmodified _TTSRWNSK_ 0 0 0 REV__nc|ENSG00000138606|Q7M4L6-2|SHF REV__nc|ENSG00000138606|Q7M4L6-2|SHF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2533264160156 2 490.251423 978.488293 NaN NaN NaN NaN NaN NaN NaN 29.393 1 27.5 27 28 -1.8928 0 0 0 0.20294 1 4998 4998 23.148 2.6948 1 + 47362 24062 31514 31534 46577 46577 -0.001811713934330328 TTSSWKAER 9 Unmodified _TTSSWKAER_ 0 0 0 ENST00000518201.1_1_8:8093783-8093813:-|nuORF ENST00000518201.1_1_8:8093783-8093813:-|nuORF ENST00000518201.1_1_8:8093783-8093813:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2701416015625 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 15.599 1 14.383 13.883 14.883 -1.2159 0 0 0 0.23508 1 2411 2411 10.074 0 1 47363 10804 31515 31535 46578 46578 -0.004609195675357114 TTTDTTEY 8 Unmodified _TTTDTTEY_ 0 0 0 REV__ENST00000519769.5_1_8:21777281-21827143:+|nuORF REV__ENST00000519769.5_1_8:21777281-21827143:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.22119140625 3 311.13455 930.381822 NaN NaN NaN NaN NaN NaN NaN 5.5034 1 5.5034 5.0034 6.0034 0 0 0 0 0.21486 1 298 298 0.45834 0 1 + 47364 15991 31516 31536 46579 46579 -0.08615391469277256 TTTDTTEY 8 Unmodified _TTTDTTEY_ 0 0 0 REV__ENST00000519769.5_1_8:21777281-21827143:+|nuORF REV__ENST00000519769.5_1_8:21777281-21827143:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2043762207031 3 311.13455 930.381822 NaN NaN NaN NaN NaN NaN NaN 5.551 1 5.551 5.051 6.051 0 0 0 0 0.21486 1 307 307 0.45834 0 1 + 47365 15991 31516 31536 46580 46580 -0.08615391469277256 TTTDTTEY 8 Unmodified _TTTDTTEY_ 0 0 0 REV__ENST00000519769.5_1_8:21777281-21827143:+|nuORF REV__ENST00000519769.5_1_8:21777281-21827143:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2042236328125 3 311.13455 930.381822 NaN NaN NaN NaN NaN NaN NaN 7.88 1 7.88 7.38 8.38 0 0 0 0 0.21486 1 765 765 0.45834 0 1 + 47366 15991 31516 31536 46581 46581 -0.08615391469277256 TTTFSRGAIQ 10 Unmodified _TTTFSRGAIQ_ 0 0 0 REV__sp|P16739|UL119_HCMVAViralFc-gammareceptor-likeproteinUL119OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL119/UL118PE=2SV=2 REV__sp|P16739|UL119_HCMVAViralFc-gammareceptor-likeproteinUL119OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL119/UL118PE=2SV=2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2620239257812 2 541.285463 1080.55637 -0.35229 -0.00019069 0.54964 0.00029751 0.19734 0.00010682 541.2857311010298 17.849 0.44438 16.577 16.419 16.864 -1.2722 32 12 4 0 0 0 0.4708 1 2673 2673 26.268 1.2772 1 5728600 + 47367 24683 31517 31537 46582 46582 0.019316534665676954 TTTQLWSA 8 Unmodified _TTTQLWSA_ 0 0 0 REV__KRTAP10-9|p.C178Afs*?|1|0.32|ENSG00000221837|chr21:44627698-44627698|C/-|frameshift_variant REV__KRTAP10-9|p.C178Afs*?|1|0.32|ENSG00000221837|chr21:44627698-44627698|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7547302246094 2 454.229625 906.444697 -0.52934 -0.00024044 0.71178 0.00032331 0.18244 8.2871E-05 454.2299373353908 36.5 0.39084 34.107 33.943 34.334 -2.3938 17 10 2 0 0 0 0.9455 1 6754 6754 16.942 0 1 779420 + 47368 23741 31518 31538 46583 46583 -0.012267808905789934 TTTRSKQWS 9 Unmodified _TTTRSKQWS_ 0 0 0 REV__ENSG00000215182|ENST00000621226|MUC5AC REV__ENSG00000215182|ENST00000621226|MUC5AC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.783203125 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 34.714 1 32.462 31.962 32.962 -2.2527 0 0 0 0.1964 1 6096 6096 0.40827 0 1 + 47369 19683 31519 31539 46584 46584 0.008587693238041538 TTTRTKVI 8 Unmodified _TTTRTKVI_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2445068359375 2 460.282192 918.549831 -0.19608 -9.0253E-05 0.72199 0.00033232 0.52591 0.00024207 460.28358693450156 103.48 0.81339 99.257 98.875 99.689 -4.2183 43 23 3 0 0 0 0.76728 1 20336 20336 5.7604 5.7604 1 1254200 47370 1648 31520 31540 46585 46585 0.08729760305857326 TTTRVTKL 8 Unmodified _TTTRVTKL_ 0 0 0 REV__CACNG7|p.A100T|1|0.31|ENSG00000105605|chr19:53915379-53915379|G/A|missense_variant REV__CACNG7|p.A100T|1|0.31|ENSG00000105605|chr19:53915379-53915379|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2325134277344 2 460.282192 918.549831 NaN NaN NaN NaN NaN NaN NaN 103.38 1 103.38 102.88 103.88 0 0 0 0 0.23782 1 20314 20314 0.13829 0 1 + 47371 13240 31521 31541 46586 46586 0.08729760305857326 TTTTEIHL 8 Unmodified _TTTTEIHL_ 0 0 0 ENST00000352536.7_1_6:117593658-117593937:+|nuORF ENST00000352536.7_1_6:117593658-117593937:+|nuORF ENST00000352536.7_1_6:117593658-117593937:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22906494140625 2 458.242732 914.470912 -0.029793 -1.3653E-05 0.15914 7.2924E-05 0.12934 5.9271E-05 458.2427614944362 95.916 1.447 92.035 91.579 93.026 -3.881 86 41 3 0 0 0 8448 1 18483 18483 0.68139 0 1 5856900 47372 8932 31522 31542 46587 46587 0.010254882809135779 TTTTIITTTI 10 Unmodified _TTTTIITTTI_ 0 0 0 SEZ6|p.P892Hfs*50|1|0.15|ENSG00000063015|chr17:28957062-28957062|G/-|frameshift_variant;SEZ6|p.P306Lfs*27|1|0.38|ENSG00000063015|chr17:28969896-28969896|C/-|frameshift_variant;nc|ENSG00000063015|Q53EL9-4|SEZ6;nc|ENSG00000063015|Q53EL9-2|SEZ6;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6 SEZ6|p.P892Hfs*50|1|0.15|ENSG00000063015|chr17:28957062-28957062|G/-|frameshift_variant SEZ6|p.P892Hfs*50|1|0.15|ENSG00000063015|chr17:28957062-28957062|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2864379882812 2 533.305529 1064.59651 NaN NaN NaN NaN NaN NaN NaN 69.166 1 65.63 65.13 66.13 -3.5362 0 0 0 0.22588 1 13021 13021 9.3831 0.78985 1 47373 25656 31523 31543 46588 46588 0.06679155346455445 TTTTPSPPI 9 Unmodified _TTTTPSPPI_ 0 0 0 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2372131347656 2 457.745108 913.475663 0.11144 5.101E-05 0.1289 5.9002E-05 0.24034 0.00011001 457.7450992069584 118.16 1.1132 113.66 112.89 114.01 -4.502 54 31 2 0 0 0 0.46598 1 23338 23338 0.40827 0.335 1 2864000 47374 12553 31524 31544 46589 46589 0.015463724236838061 TTTTRYGAS 9 Unmodified _TTTTRYGAS_ 0 0 0 REV__NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant REV__NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7345886230469 2 479.235439 956.456324 0.31151 0.00014929 -0.275 -0.00013179 0.036505 1.7494E-05 479.23526867033115 28.902 0.73481 27.147 26.805 27.54 -1.7552 36 20 2 0 0 0 0.80521 1 4866 4866 3.5965 0 1 1051400 + 47375 17436 31525 31545 46590 46590 -0.02364583867233705 TTTTRYGAS 9 Unmodified _TTTTRYGAS_ 0 0 0 REV__NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant REV__NBEAL2|p.C1705Vfs*45|1|0.24|ENSG00000160796|chr3:47002246-47002246|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.235439 956.456324 -0.0003953 -1.8944E-07 0.28072 0.00013453 0.28033 0.00013434 479.2355349765184 27.158 0.65466 27.158 26.873 27.528 0 0.0052769 0.00025699 NaN 3.5965 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1770200 + 47376 17436 31525 31545 -0.02364583867233705 TTVARLIAIFF 11 Unmodified _TTVARLIAIFF_ 0 0 0 ENST00000528098.5_1_11:57182763-57193651:-|nuORF;ENSG00000134802|ENST00000395124|SLC43A3;nc|ENSG00000134802|Q8NBI5-2|SLC43A3 ENST00000528098.5_1_11:57182763-57193651:-|nuORF ENST00000528098.5_1_11:57182763-57193651:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.1838684082031 4 313.69195 1250.73869 -0.58431 -0.00018329 1.4715 0.00046161 0.88722 0.00027831 313.6923922280743 88.108 0.34177 88.108 87.985 88.327 0 11 9 2 0 0 0 0.96224 1 17227 17227 0.094841 0.094841 1 937150 47377 3876 31526 31546 46591 46591 0.12335412879292562 TTVGGLTPSS 10 Unmodified _TTVGGLTPSS_ 0 0 0 REV__tr|U7SFS9|U7SFS9_FUSNUAdenylosuccinatesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purAPE=3SV=1 REV__tr|U7SFS9|U7SFS9_FUSNUAdenylosuccinatesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2388000488281 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 71.797 1 68.17 67.67 68.67 -3.6275 0 0 0 0.15474 1 13548 13548 36.127 8.4982 1 + 47378 24858 31527 31547 46592 46592 0.0033318441828669165 TTVGSTTVGP 10 Unmodified _TTVGSTTVGP_ 0 0 0 ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2384338378906 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 71.454 1 68.205 67.705 68.705 -3.2492 0 0 0 0.14213 1 13912 13912 37.974 1.847 1 47379 7740 31528 31548 46593 46593 0.0033318441828669165 TTVPLLLGY 9 Unmodified _TTVPLLLGY_ 0 0 0 nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;MROH1|p.P1048Qfs*9|1|0.21|ENSG00000179832|chr8:144248894-144248894|C/-|frameshift_variant;nc|ENSG00000179832|Q8NDA8-7|MROH1;MROH1|p.W579C|1|0.25|ENSG00000179832|chr8:144239718-144239718|G/T|missense_variant;ENST00000544576.1_1_8:145294015-145297158:+|nuORF;ENSG00000179832|ENST00000326134|MROH1 nc|ENSG00000179832|Q8NDA8-2|MROH1;ENSG00000179832|ENST00000326134|MROH1 nc|ENSG00000179832|Q8NDA8-2|MROH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 326.21624755859375 3 326.195304 975.564084 NaN NaN NaN NaN NaN NaN NaN 90.459 1 86.681 86.181 87.181 -3.7779 0 0 0 0.23508 1 17312 17312 1.1933 0 1 47380 10979;6645 31529 31549 46594 46594 0.075324127341446 TTVPRIYI 8 Unmodified _TTVPRIYI_ 0 0 0 REV__ENSG00000181927|ENST00000641760|OR4P4 REV__ENSG00000181927|ENST00000641760|OR4P4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.78515625 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 73.917 1 70.241 69.741 70.741 -3.6764 0 0 0 0.21452 1 13978 13978 13.508 1.8676 1 + 47381 18747 31530 31550 46595 46595 0.07734948311224343 TTVQVRVPY 9 Unmodified _TTVQVRVPY_ 0 0 0 ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2606811523438 2 531.800749 1061.58694 0.2293 0.00012194 -0.128 -6.8069E-05 0.1013 5.3874E-05 531.800703993371 38.517 0.83819 36.112 35.742 36.58 -2.4049 52 23 3 0 0 0 0.66537 1 6885 6885 8.5933 1.304 1 1934500 47382 6477 31531 31551 46596 46596 0.05861431851622001 TTVQVRVPY 9 Unmodified _TTVQVRVPY_ 0 0 0 ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 531.800749 1061.58694 0.13387 7.1193E-05 -0.21463 -0.00011414 -0.080761 -4.2949E-05 531.8006325022495 36.453 0.74372 36.453 35.999 36.743 0 0.24701 -7.9206E-05 NaN 8.5933 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3290300 47383 6477 31531 31551 0.05861431851622001 TTVQVRVPY 9 Unmodified _TTVQVRVPY_ 0 0 0 ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 531.800749 1061.58694 -0.27438 -0.00014592 0.17436 9.2724E-05 -0.10002 -5.3193E-05 531.8007927674938 38.665 0.80304 36.116 35.768 36.571 -2.5491 -0.08972 0.00033453 NaN 8.5933 53 22 3 NaN NaN NaN NaN 0 NaN NaN 0 3199400 47384 6477 31531 31551 0.05861431851622001 TTVQVRVPY 9 Unmodified _TTVQVRVPY_ 0 0 0 ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C ENSG00000176624|ENST00000406189|MEX3C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 531.800749 1061.58694 0.37597 0.00019994 -0.26836 -0.00014271 0.1076 5.7224E-05 531.8006027439227 38.584 0.90923 36.143 35.74 36.649 -2.4419 -0.063383 -0.00013635 NaN 8.5933 53 25 3 NaN NaN NaN NaN 0 NaN NaN 0 2249300 47385 6477 31531 31551 0.05861431851622001 TTVTFTVRPG 10 Unmodified _TTVTFTVRPG_ 0 0 0 nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2 nc|ENSG00000162105|Q9UPX8-4|SHANK2 nc|ENSG00000162105|Q9UPX8-4|SHANK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013244628906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 55.336 1 55.336 54.836 55.836 0 0 0 0 0.22588 1 10562 10562 2.8433 0.3448 1 47386 5314 31532 31552 46597 46597 0.046171279889904326 TTVTGAGL 8 Unmodified _TTVTGAGL_ 0 0 0 REV__ENSG00000146216|ENST00000259750|TTBK1 REV__ENSG00000146216|ENST00000259750|TTBK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018127441406 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 101.54 1 97.38 96.88 97.88 -4.1594 0 0 0 0.21486 1 19954 19954 5.2307 2.3415 1 + 47387 16876 31533 31553 46598 46598 0.015661625349594033 TTWSSWRSL 9 Unmodified _TTWSSWRSL_ 0 0 0 REV__C8B|p.S69R|1|0.15|ENSG00000021852|chr1:56960062-56960062|A/C|missense_variant REV__C8B|p.S69R|1|0.15|ENSG00000021852|chr1:56960062-56960062|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2073669433594 3 375.189212 1122.54581 NaN NaN NaN NaN NaN NaN NaN 71.09 1 67.51 67.01 68.01 -3.5798 0 0 0 0.23508 1 13403 13403 4.1895 0.31317 1 + 47388 13228 31534 31554 46599 46599 -0.010563291878725067 TTYLATSEA 9 Unmodified _TTYLATSEA_ 0 0 0 REV__ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant REV__ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7313537597656 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 55.345 1 52.207 51.707 52.707 -3.1377 0 0 0 0.19684 1 10272 10272 0.40827 0.335 1 + 47389 15981 31535 31555 46600 46600 -0.02966521818621004 TTYRNLLY 8 Unmodified _TTYRNLLY_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1091Lfs*4|1|0.38|ENSG00000116641|chr1:62539572-62539572|A/-|frameshift_variant;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant;nc|ENSG00000116641|Q96N67-7|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.26708984375 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 143.42 1 138.4 137.9 138.9 -5.0261 0 0 0 0.21486 1 27650 27650 7.9102 0.62092 1 47390 2937 31536 31556 46601 46601 0.025174564432290936 TTYSISDEM 9 Unmodified _TTYSISDEM_ 0 0 0 REV__CD22|p.G759S|1|0.28|ENSG00000012124|chr19:35345668-35345668|G/A|missense_variant REV__CD22|p.G759S|1|0.28|ENSG00000012124|chr19:35345668-35345668|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6889038085938 2 523.720972 1045.42739 -0.39669 -0.00020775 1.4024 0.00073447 1.0057 0.00052672 523.7215505749851 112.33 0.57907 107.87 107.67 108.25 -4.4539 21 16 2 0 0 0 0.38188 1 22153 22153 26.884 0 1 1027000 + 47391 13328 31537 31557 46602 46602 -0.09350489278540408 TTYSISDEM 9 Unmodified _TTYSISDEM_ 0 0 0 REV__CD22|p.G759S|1|0.28|ENSG00000012124|chr19:35345668-35345668|G/A|missense_variant REV__CD22|p.G759S|1|0.28|ENSG00000012124|chr19:35345668-35345668|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6895751953125 2 523.720972 1045.42739 -0.55455 -0.00029043 1.5735 0.00082407 1.0189 0.00053364 523.7217842818558 112.65 0.66203 108.13 107.66 108.32 -4.5259 31 18 2 0 0 0 0.55979 1 21580 21580 15.847 3.3156 1 1707100 + 47392 13328 31537 31557 46603 46603 -0.09350489278540408 TTYSISDEM 9 Unmodified _TTYSISDEM_ 0 0 0 REV__CD22|p.G759S|1|0.28|ENSG00000012124|chr19:35345668-35345668|G/A|missense_variant REV__CD22|p.G759S|1|0.28|ENSG00000012124|chr19:35345668-35345668|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.720972 1045.42739 0.35561 0.00018624 1.2072 0.00063223 1.5628 0.00081847 523.7216756053775 107.52 0.52402 107.52 107.37 107.9 0 -0.17655 -0.00014433 NaN 26.884 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1763200 + 47393 13328 31537 31557 -0.09350489278540408 TTYSISDEM 9 Unmodified _TTYSISDEM_ 0 0 0 REV__CD22|p.G759S|1|0.28|ENSG00000012124|chr19:35345668-35345668|G/A|missense_variant REV__CD22|p.G759S|1|0.28|ENSG00000012124|chr19:35345668-35345668|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 523.720972 1045.42739 -0.39669 -0.00020775 1.4024 0.00073447 1.0057 0.00052672 523.7215505749851 112.33 0.57907 107.87 107.67 108.25 -4.4539 0.17655 6.0154E-05 NaN 26.884 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1027000 + 47394 13328 31537 31557 -0.09350489278540408 TTYSISDEM 9 Unmodified _TTYSISDEM_ 0 0 0 REV__CD22|p.G759S|1|0.28|ENSG00000012124|chr19:35345668-35345668|G/A|missense_variant REV__CD22|p.G759S|1|0.28|ENSG00000012124|chr19:35345668-35345668|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.720972 1045.42739 -0.55455 -0.00029043 1.5735 0.00082407 1.0189 0.00053364 523.7217842818558 112.65 0.66203 108.13 107.66 108.32 -4.5259 0.095884 0.00052858 NaN 15.847 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1707100 + 47395 13328 31537 31557 -0.09350489278540408 TTYSISDEM 9 Unmodified _TTYSISDEM_ 0 0 0 REV__CD22|p.G759S|1|0.28|ENSG00000012124|chr19:35345668-35345668|G/A|missense_variant REV__CD22|p.G759S|1|0.28|ENSG00000012124|chr19:35345668-35345668|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.720972 1045.42739 0.64235 0.00033641 0.46817 0.00024519 1.1105 0.0005816 523.7211743557299 112.21 0.48955 107.94 107.59 108.08 -4.2725 -0.095884 -0.00062917 NaN 15.847 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1240800 + 47396 13328 31537 31557 -0.09350489278540408 TTYSQSGMSIE 11 Unmodified _TTYSQSGMSIE_ 0 0 0 REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2 REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.27880859375 2 602.263536 1202.51252 NaN NaN NaN NaN NaN NaN NaN 117.92 1 113.52 113.02 114.02 -4.4088 0 0 0 0.22632 1 22695 22695 0.58532 0.17705 1 + 47397 19410 31538 31558 46604 46604 -0.08063743812749635 TVAAAAVTA 9 Unmodified _TVAAAAVTA_ 0 0 0 nc|ENSG00000214655|A7E2V4-2|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;ENST00000433366.6_1_10:75557251-75561274:+|nuORF nc|ENSG00000214655|A7E2V4-2|ZSWIM8 nc|ENSG00000214655|A7E2V4-2|ZSWIM8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7215576171875 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 40.192 1 40.192 39.692 40.692 0 0 0 0 0.19649 1 7474 7474 0.40827 0 1 47398 12594 31539 31559 46605 46605 0.03254137943315527 TVAASGTL 8 Unmodified _TVAASGTL_ 0 0 0 ENST00000381858.5_1_9:4679709-4679820:+|nuORF ENST00000381858.5_1_9:4679709-4679820:+|nuORF ENST00000381858.5_1_9:4679709-4679820:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 104.43 1 100.37 99.871 100.87 -4.0543 0 0 0 0.21486 1 20080 20080 9.3474 0 1 47399 9337 31540 31560 46606 46606 0.015661625349594033 TVACHYYR 8 Unmodified _TVACHYYR_ 0 0 0 REV__ENSG00000213160|ENST00000392647|KLHL23 REV__ENSG00000213160|ENST00000392647|KLHL23 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.1303405761719 3 338.160488 1011.45964 NaN NaN NaN NaN NaN NaN NaN 100.47 1 96.168 95.668 96.668 -4.297 0 0 0 0.21486 1 19217 19217 3.5965 0.31518 1 + 47400 19636 31541 31561 46607 46607 -0.0456361229422555 TVADHIQKV 9 Unmodified _TVADHIQKV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.8327331542969 3 337.525825 1009.55564 -0.38768 -0.00013085 0.59755 0.00020169 0.20986 7.0834E-05 337.5259926159246 33.252 1.396 33.252 32.399 33.795 0 105 39 4 0 0 0 0.10782 1 6041 6041 67.838 61.351 1 24866000 47401 6743 31542 31562 46608 46608 0.051248588175326404 TVADHIQKV 9 Unmodified _TVADHIQKV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 337.525825 1009.55564 -0.60949 -0.00020572 0.53959 0.00018212 -0.069904 -2.3595E-05 337.5259990647599 35.612 1.2411 33.218 32.527 33.768 -2.3938 -0.026421 5.0481E-05 NaN 67.838 99 34 4 NaN NaN NaN NaN 0 NaN NaN 0 64355000 47402 6743 31542 31562 0.051248588175326404 TVAERFFS 8 Unmodified _TVAERFFS_ 0 0 0 REV__ENST00000355739.8_3_13:103498310-103498451:+|nuORF REV__ENST00000355739.8_3_13:103498310-103498451:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7229309082031 2 478.745442 955.476331 NaN NaN NaN NaN NaN NaN NaN 77.642 1 77.642 77.142 78.142 0 0 0 0 0.20294 1 15099 15099 23.148 1.4018 1 + 47403 20798 31543 31563 46609 46609 -0.003187881366102374 TVAERWPG 8 Unmodified _TVAERWPG_ 0 0 0 ENST00000491523.5_1_16:89627540-89627606:+|nuORF ENST00000491523.5_1_16:89627540-89627606:+|nuORF ENST00000491523.5_1_16:89627540-89627606:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2384948730469 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 84.279 1 80.568 80.068 81.068 -3.7117 0 0 0 0.21486 1 16095 16095 9.3474 0 1 47404 10527 31544 31564 46610 46610 0.0003634506618936939 TVAFLWTNL 9 Unmodified _TVAFLWTNL_ 0 0 0 REV__RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant REV__RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2684936523438 2 532.792392 1063.57023 -0.34239 -0.00018242 -2.4539 -0.0013074 -2.7963 -0.0014898 533.2927055401472 109.86 0.51091 105.48 105.17 105.68 -4.3776 23 14 2 0 0 0 0.36034 1 21630 21630 29.082 0 1 921780 + 47405 18186 31545 31565 46611 46611 0.040989309656424666 TVAGEERPG 9 Unmodified _TVAGEERPG_ 0 0 0 REV__ENST00000371370.7_1_1:54412125-54413474:+|nuORF REV__ENST00000371370.7_1_1:54412125-54413474:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22869873046875 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 137.59 1 132.95 132.45 133.45 -4.6413 0 0 0 0.19638 1 27156 27156 0.12781 0 1 + 47406 21002 31546 31566 46612 46612 -0.0148856652166387 TVAGVPLGPVN 11 Unmodified _TVAGVPLGPVN_ 0 0 0 REV__CEACAM4|p.A154T|2|0.23|ENSG00000105352|chr19:41621733-41621733|C/T|missense_variant REV__CEACAM4|p.A154T|2|0.23|ENSG00000105352|chr19:41621733-41621733|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.294921875 2 512.295299 1022.57605 NaN NaN NaN NaN NaN NaN NaN 168.68 1 168.68 168.18 169.18 0 0 0 0 0.1873 1 34570 34570 0.58532 0.4575 1 + 47407 13360 31547 31567 46613 46613 0.06566029477323809 TVAKKLMRKW 10 Unmodified _TVAKKLMRKW_ 0 0 0 ENSG00000182836|ENST00000377801|PLCXD3 ENSG00000182836|ENST00000377801|PLCXD3 ENSG00000182836|ENST00000377801|PLCXD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7485961914062 2 630.884093 1259.75363 NaN NaN NaN NaN NaN NaN NaN 143.48 1 138.45 137.95 138.95 -5.0261 0 0 0 0.22588 1 27660 27660 10.074 1.3285 1 47408 6814 31548 31568 46614 46614 0.13414581475672094 TVALHLSTVC 10 Unmodified _TVALHLSTVC_ 0 0 0 REV__ENSG00000160111|ENST00000443236|CPAMD8 REV__ENSG00000160111|ENST00000443236|CPAMD8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.271240234375 2 522.281334 1042.54812 NaN NaN NaN NaN NaN NaN NaN 147.78 1 143.07 142.57 143.57 -4.7095 0 0 0 0.22583 1 29336 29336 13.906 0.86358 1 + 47409 17394 31549 31569 46615 46615 0.02854383225599122 TVALSSLKTFL 11 Unmodified _TVALSSLKTFL_ 0 0 0 ENST00000457388.1_1_10:37627476-37627722:+|nuORF ENST00000457388.1_1_10:37627476-37627722:+|nuORF ENST00000457388.1_1_10:37627476-37627722:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.254638671875 2 590.352814 1178.69108 NaN NaN NaN NaN NaN NaN NaN 158.86 1 158.86 158.36 159.36 0 0 0 0 0.22595 1 31896 31896 11.495 0 1 47410 10038 31550 31570 46616 46616 0.10887713888473627 TVAQIGALLFF 11 Unmodified _TVAQIGALLFF_ 0 0 0 REV__ENSG00000110446|ENST00000227880|SLC15A3 REV__ENSG00000110446|ENST00000227880|SLC15A3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2568359375 2 590.342249 1178.66995 NaN NaN NaN NaN NaN NaN NaN 158.33 1 158.33 157.83 158.83 0 0 0 0 0.22775 1 31789 31789 10.074 2.9722 1 + 47411 15203 31551 31571 46617 46617 0.08775748579614628 TVASGSEVVL 10 Unmodified _TVASGSEVVL_ 0 0 0 nc|ENSG00000256590|A0JD37|TRDV3 nc|ENSG00000256590|A0JD37|TRDV3 nc|ENSG00000256590|A0JD37|TRDV3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7653503417969 2 481.263665 960.512776 0.58455 0.00028132 -0.40531 -0.00019506 0.17924 8.6261E-05 481.26347473543285 109.74 0.59766 105.56 105.12 105.72 -4.1826 26 16 2 0 0 0 0.45952 1 21088 21088 26.884 0 1 1265900 47412 12631 31552 31572 46618 46618 0.030940439694290944 TVATMISCYY 10 Unmodified _TVATMISCYY_ 0 0 0 nc|ENSG00000106633|P35557-3|GCK;ENSG00000106633|ENST00000403799|GCK;nc|ENSG00000106633|P35557-2|GCK nc|ENSG00000106633|P35557-3|GCK nc|ENSG00000106633|P35557-3|GCK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3385009765625 2 576.25921 1150.50387 0.27978 0.00016123 -3.3924 -0.0019549 -3.1126 -0.0017937 576.2581088357723 127.88 0.20558 123.08 123.01 123.22 -4.8034 7 5 2 0 0 0 0.90091 1 24537 24537 6.2058 1.8765 1 860920 47413 2398 31553 31573 46619 46619 -0.06536388982908647 TVAVTVEKG 9 Unmodified _TVAVTVEKG_ 0 0 0 REV__TGM4|p.L523Tfs*3|1|0.1|ENSG00000163810|chr3:44910324-44910325|-/A|frameshift_variant REV__TGM4|p.L523Tfs*3|1|0.1|ENSG00000163810|chr3:44910324-44910325|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76513671875 2 452.260925 902.507297 0.074574 3.3727E-05 0.25014 0.00011313 0.32472 0.00014686 452.26098614165585 75.643 0.73222 71.92 71.509 72.242 -3.7227 54 20 4 0 0 0 0.42842 1 14296 14296 0.40827 0.15679 1 12045000 + 47414 17615 31554 31574 46620 46620 0.05214365177619129 TVAVWQCN 8 Unmodified _TVAVWQCN_ 0 0 0 REV__ENST00000378230.7_1_1:3768861-3773562:-|nuORF REV__ENST00000378230.7_1_1:3768861-3773562:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2324523925781 2 460.71837 919.422187 0.26872 0.00012381 1.133 0.000522 1.4017 0.00064581 460.7188217294092 101.45 0.82603 97.13 96.714 97.54 -4.3208 55 23 3 0 0 0 0.97173 1 19461 19461 7.9102 2.1497 1 6381200 + 47415 21110 31555 31575 46621 46621 -0.04074703559842874 TVCGGKIYVF 10 Unmodified _TVCGGKIYVF_ 0 0 0 ENST00000471654.1_1_2:23914526-23929531:+|nuORF;ENSG00000119771|ENST00000486442|KLHL29 ENST00000471654.1_1_2:23914526-23929531:+|nuORF ENST00000471654.1_1_2:23914526-23929531:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7863159179688 2 543.786253 1085.55795 NaN NaN NaN NaN NaN NaN NaN 159.62 1 154.83 154.33 155.33 -4.7952 0 0 0 0.22588 1 31737 31737 6.7232 2.3939 1 47416 3101 31556 31576 46622 46622 0.01859571230943402 TVCKKRVE 8 Unmodified _TVCKKRVE_ 0 0 0 REV__ENST00000477159.1_1_6:47512400-47512532:+|nuORF REV__ENST00000477159.1_1_6:47512400-47512532:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7780456542969 2 481.776219 961.537886 NaN NaN NaN NaN NaN NaN NaN 154.98 1 150.2 149.7 150.7 -4.7791 0 0 0 0.21486 1 30811 30811 9.3474 0.75416 1 + 47417 22112 31557 31577 46623 46623 0.05557820291005555 TVDDEAPAV 9 Unmodified _TVDDEAPAV_ 0 0 0 ENST00000562816.5_1_16:89383456-89484700:-|nuORF;ENST00000378330.6_1_16:89383456-89484700:-|nuORF;ENST00000330736.9_1_16:89383456-89383540:-|nuORF ENST00000562816.5_1_16:89383456-89484700:-|nuORF ENST00000562816.5_1_16:89383456-89484700:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23883056640625 2 458.716547 915.418542 0.48622 0.00022304 -0.35507 -0.00016288 0.13115 6.016E-05 458.7163363356658 49.476 0.66302 49.476 49.197 49.86 0 30 18 2 0 0 0 0.32599 1 9347 9347 44.407 15.92 1 1656300 47418 8771 31558 31578 46624 46624 -0.04255094852715047 TVDDEAPAV 9 Unmodified _TVDDEAPAV_ 0 0 0 ENST00000562816.5_1_16:89383456-89484700:-|nuORF;ENST00000378330.6_1_16:89383456-89484700:-|nuORF;ENST00000330736.9_1_16:89383456-89383540:-|nuORF ENST00000562816.5_1_16:89383456-89484700:-|nuORF ENST00000562816.5_1_16:89383456-89484700:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2272033691406 2 458.716547 915.418542 -0.28429 -0.00013041 0.50206 0.0002303 0.21777 9.9896E-05 458.7167348203548 52.388 0.72563 49.506 49.204 49.93 -2.8824 33 20 2 0 0 0 0.0277 1 9985 9985 85.357 43.262 1 3398400 47419 8771 31558 31578 46625 46625 -0.04255094852715047 TVDDEAPAV 9 Unmodified _TVDDEAPAV_ 0 0 0 ENST00000562816.5_1_16:89383456-89484700:-|nuORF;ENST00000378330.6_1_16:89383456-89484700:-|nuORF;ENST00000330736.9_1_16:89383456-89383540:-|nuORF ENST00000562816.5_1_16:89383456-89484700:-|nuORF ENST00000562816.5_1_16:89383456-89484700:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23687744140625 2 458.716547 915.418542 -0.0013392 -6.1433E-07 0.051572 2.3657E-05 0.050233 2.3043E-05 458.7165484499349 52.724 0.67091 49.637 49.334 50.005 -3.0876 28 18 2 0 0 0 0.23667 1 9675 9675 50.855 14.811 1 2136400 47420 8771 31558 31578 46626 46626 -0.04255094852715047 TVDDEAPAV 9 Unmodified _TVDDEAPAV_ 0 0 0 ENST00000562816.5_1_16:89383456-89484700:-|nuORF;ENST00000378330.6_1_16:89383456-89484700:-|nuORF;ENST00000330736.9_1_16:89383456-89383540:-|nuORF ENST00000562816.5_1_16:89383456-89484700:-|nuORF ENST00000562816.5_1_16:89383456-89484700:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23828125 2 458.716547 915.418542 -0.054655 -2.5071E-05 0.33301 0.00015276 0.27836 0.00012769 458.71649097819613 52.584 0.69959 49.488 49.234 49.934 -3.0954 33 19 2 0 0 0 0.23667 1 9757 9757 50.855 22.368 1 1257300 47421 8771 31558 31578 46627 46627 -0.04255094852715047 TVDEKQLE 8 Unmodified _TVDEKQLE_ 0 0 0 tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24627685546875 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 81.186 1 77.629 77.129 78.129 -3.557 0 0 0 0.23107 1 15851 15851 0.68139 0.42991 1 47422 26274 31559 31579 46628 46628 -0.005428329272831434 TVDGEFLHY 9 Unmodified _TVDGEFLHY_ 0 0 0 ENSG00000132429|ENST00000254765|POPDC3;POPDC3|p.S232Qfs*3|1|0.22|ENSG00000132429|chr6:105158652-105158652|A/-|frameshift_variant ENSG00000132429|ENST00000254765|POPDC3 ENSG00000132429|ENST00000254765|POPDC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2650146484375 2 540.753464 1079.49238 0.42544 0.00023006 -0.29569 -0.00015989 0.12975 7.0164E-05 540.7535280353283 108.43 0.66663 108.43 108.07 108.74 0 29 18 2 0 0 0 0.14832 1 21330 21330 44.407 26.272 1 2682700 47423 3723 31560 31580 46629 46629 -0.044191266903681026 TVDGEFLHY 9 Unmodified _TVDGEFLHY_ 0 0 0 ENSG00000132429|ENST00000254765|POPDC3;POPDC3|p.S232Qfs*3|1|0.22|ENSG00000132429|chr6:105158652-105158652|A/-|frameshift_variant ENSG00000132429|ENST00000254765|POPDC3 ENSG00000132429|ENST00000254765|POPDC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2640380859375 2 540.753464 1079.49238 0.032569 1.7612E-05 -0.45868 -0.00024803 -0.42611 -0.00023042 540.7532384664008 113.03 0.65169 108.57 108.17 108.83 -4.4538 31 17 3 0 0 0 0.41781 1 22318 22318 24.674 2.9272 1 1326000 47424 3723 31560 31580 46630 46630 -0.044191266903681026 TVDGEFLHY 9 Unmodified _TVDGEFLHY_ 0 0 0 ENSG00000132429|ENST00000254765|POPDC3;POPDC3|p.S232Qfs*3|1|0.22|ENSG00000132429|chr6:105158652-105158652|A/-|frameshift_variant ENSG00000132429|ENST00000254765|POPDC3 ENSG00000132429|ENST00000254765|POPDC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2813720703125 2 540.753464 1079.49238 0.12481 6.7493E-05 -0.28788 -0.00015567 -0.16306 -8.8177E-05 540.7533965377648 113.13 0.60266 108.6 108.22 108.82 -4.5259 27 16 2 0 0 0 0.22334 3 21719 21670;21719;21737 36.044 15.63 1 1281600 47425 3723 31560 31580 46631;46632;46633 46632 -0.044191266903681026 TVDGEFLHY 9 Unmodified _TVDGEFLHY_ 0 0 0 ENSG00000132429|ENST00000254765|POPDC3;POPDC3|p.S232Qfs*3|1|0.22|ENSG00000132429|chr6:105158652-105158652|A/-|frameshift_variant ENSG00000132429|ENST00000254765|POPDC3 ENSG00000132429|ENST00000254765|POPDC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2781982421875 2 540.753464 1079.49238 0.65938 0.00035656 -0.40337 -0.00021812 0.25601 0.00013844 540.7532184007252 112.84 0.69527 108.56 108.08 108.78 -4.2725 31 19 2 0 0 0 0.11447 1 21701 21701 50.855 27.707 1 1305100 47426 3723 31560 31580 46634 46634 -0.044191266903681026 TVDGHSHY 8 Unmodified _TVDGHSHY_ 0 0 0 nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;SORCS1|p.D514Tfs*16|1|0.33|ENSG00000108018|chr10:106688212-106688212|C/-|frameshift_variant;SORCS1|p.L800Cfs*3|1|0.12|ENSG00000108018|chr10:106652460-106652460|C/-|frameshift_variant nc|ENSG00000108018|Q8WY21-4|SORCS1 nc|ENSG00000108018|Q8WY21-4|SORCS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2227478027344 2 458.201399 914.388245 0.30372 0.00013917 -0.045025 -2.063E-05 0.2587 0.00011854 458.20135553014524 24.741 0.43793 24.741 24.475 24.913 0 21 12 2 0 0 0 0.64227 1 4256 4256 19.439 1.304 1 844550 47427 2453 31561 31581 46635 46635 -0.07237408727223738 TVDGHSHY 8 Unmodified _TVDGHSHY_ 0 0 0 nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;SORCS1|p.D514Tfs*16|1|0.33|ENSG00000108018|chr10:106688212-106688212|C/-|frameshift_variant;SORCS1|p.L800Cfs*3|1|0.12|ENSG00000108018|chr10:106652460-106652460|C/-|frameshift_variant nc|ENSG00000108018|Q8WY21-4|SORCS1 nc|ENSG00000108018|Q8WY21-4|SORCS1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.201399 914.388245 0.094538 4.3318E-05 0.055724 2.5533E-05 0.15026 6.8851E-05 458.201410210806 26.485 0.52414 24.85 24.513 25.037 -1.6347 0.066537 6.19E-05 NaN 19.439 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1105300 47428 2453 31561 31581 -0.07237408727223738 TVDGNNDDEPQ 11 Unmodified _TVDGNNDDEPQ_ 0 0 0 REV__PEG3|p.S136G|1|0.18|ENSG00000198300|chr19:56823668-56823668|T/C|missense_variant REV__PEG3|p.S136G|1|0.18|ENSG00000198300|chr19:56823668-56823668|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2738037109375 2 602.241646 1202.46874 NaN NaN NaN NaN NaN NaN NaN 142.15 1 142.15 141.65 142.65 0 0 0 0 0.23324 1 28340 28340 5.7319 1.4026 1 + 47429 24454 31562 31582 46636 46636 -0.12439636985504876 TVDHLQGLY 9 Unmodified _TVDHLQGLY_ 0 0 0 ENSG00000164920|ENST00000297565|OSR2;nc|ENSG00000164920|Q8N2R0-3|OSR2;OSR2|p.Y58Ifs*79|1|0.45|ENSG00000164920|chr8:98949120-98949120|G/-|frameshift_variant;nc|ENSG00000164920|Q8N2R0-2|OSR2 ENSG00000164920|ENST00000297565|OSR2 ENSG00000164920|ENST00000297565|OSR2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6983642578125 2 523.269281 1044.52401 -0.53185 -0.0002783 0.76524 0.00040043 0.23339 0.00012213 523.2696414295674 138.74 0.66718 133.78 133.36 134.02 -4.952 25 18 2 0 0 0 0.70873 1 26695 26695 18.135 1.1927 1 2391200 47430 5575 31563 31583 46637 46637 0.0035286606357658457 TVDIHKEKV 9 Unmodified _TVDIHKEKV_ 0 0 0 nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;ENST00000473481.1_1_10:27065936-27112150:-|nuORF;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1 nc|ENSG00000138443|Q9NYB9|ABI2;nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000138443|Q9NYB9|ABI2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5597839355469 3 356.873113 1067.59751 -0.24201 -8.6367E-05 0.46844 0.00016717 0.22643 8.0806E-05 356.87325054012405 23.078 0.58563 23.078 22.823 23.409 0 46 16 4 0 0 0 0.32251 1 3933 3933 11.749 5.2624 1 6896100 47431 4172;12344 31564 31584 46638 46638 0.06641414506043475 TVDIHKEKV 9 Unmodified _TVDIHKEKV_ 0 0 0 nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;ENST00000473481.1_1_10:27065936-27112150:-|nuORF;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1 nc|ENSG00000138443|Q9NYB9|ABI2;nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000138443|Q9NYB9|ABI2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.0732727050781 3 356.873113 1067.59751 0.021441 7.6518E-06 0.1486 5.3031E-05 0.17004 6.0683E-05 356.87309890792244 24.504 0.51484 22.97 22.714 23.229 -1.5342 39 14 4 0 0 0 0.8606 1 4006 4006 4.1895 0.59301 1 5744400 47432 4172;12344 31564 31584 46639 46639 0.06641414506043475 TVDKHSDEY 9 Unmodified _TVDKHSDEY_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;nc|ENSG00000172216|P17676-3|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7833862304688 2 547.24346 1092.47237 -0.38064 -0.0002083 0.43234 0.00023659 0.051693 2.8289E-05 547.2436221179511 15.414 0.20584 14.3 14.167 14.373 -1.1142 9 5 2 0 0 0 0.80264 1 2360 2360 17.113 9.2027 1 1310300 47433 6200 31565 31585 46640 46640 -0.07016922420984884 TVDKHSDEY 9 Unmodified _TVDKHSDEY_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;nc|ENSG00000172216|P17676-3|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 547.24346 1092.47237 0.21801 0.00011931 0.41111 0.00022498 0.62912 0.00034428 547.2435941506418 14.58 0.24309 14.58 14.457 14.7 0 0.14016 -1.2858E-05 NaN 27.629 11 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1535200 47434 6200 31565 31585 -0.07016922420984884 TVDLHVWPD 9 Unmodified _TVDLHVWPD_ 0 0 0 ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENST00000493891.5_1_1:60103921-60223658:+|nuORF;ENST00000466791.5_1_1:60103921-60146476:+|nuORF ENSG00000172456|ENST00000303721|FGGY ENSG00000172456|ENST00000303721|FGGY MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.269775390625 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 94.158 1 90.314 89.814 90.814 -3.844 0 0 0 0.19711 1 18061 18061 0.40827 0 1 47435 6222 31566 31586 46641 46641 -0.01303133936426093 TVDLKRGKE 9 Unmodified _TVDLKRGKE_ 0 0 0 REV__nc|ENSG00000145284|Q86SK9-2|SCD5 REV__nc|ENSG00000145284|Q86SK9-2|SCD5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.698486328125 2 523.303655 1044.59276 0.30537 0.0001598 0.1928 0.00010089 0.49817 0.00026069 523.3035781153143 139.19 1.0864 134.34 133.83 134.91 -4.8492 50 30 2 0 0 0 0.69192 1 26746 26746 20.454 3.5113 1 2509400 + 47436 16833 31567 31587 46642 46642 0.07224530363305348 TVDNSWVDF 9 Unmodified _TVDNSWVDF_ 0 0 0 REV__nc|ENSG00000174233|O43306-2|ADCY6;REV__ADCY5|p.L820Tfs*74|1|0.32|ENSG00000173175|chr3:123304169-123304170|-/G|frameshift_variant REV__nc|ENSG00000174233|O43306-2|ADCY6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.269287109375 2 541.743096 1081.47164 0.083523 4.5248E-05 0.20697 0.00011213 0.2905 0.00015737 541.7429885592593 106.18 0.65848 101.8 101.58 102.24 -4.3764 32 18 4 0 0 0 0.73268 1 20416 20416 13.042 0 1 1640300 + 47437 18403;12956 31568 31588 46643 46643 -0.06583717070043349 TVDPASLWEY 10 Unmodified _TVDPASLWEY_ 0 0 0 ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1 ENST00000473330.1_1_7:5642709-5645102:+|nuORF ENST00000473330.1_1_7:5642709-5645102:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.268310546875 2 590.779679 1179.5448 0.35927 0.00021225 -0.30093 -0.00017778 0.058336 3.4464E-05 590.7797246735843 164.81 0.54605 164.81 164.47 165.01 0 32 15 3 0 0 0 0.068853 1 33359 33359 88.954 52.827 1 77928000 47438 1520 31569 31589 46644 46644 -0.03778588347427103 TVDPASLWEY 10 Unmodified _TVDPASLWEY_ 0 0 0 ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1 ENST00000473330.1_1_7:5642709-5645102:+|nuORF ENST00000473330.1_1_7:5642709-5645102:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2496948242188 2 590.779679 1179.5448 0.6043 0.00035701 0.25974 0.00015345 0.86405 0.00051046 590.7796647256763 166.99 0.38702 162.04 161.8 162.19 -4.948 26 10 4 0 0 0 0.068853 1 32797 32797 88.954 67.417 1 116110000 47439 1520 31569 31589 46645 46645 -0.03778588347427103 TVDPASLWEY 10 Unmodified _TVDPASLWEY_ 0 0 0 ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1 ENST00000473330.1_1_7:5642709-5645102:+|nuORF ENST00000473330.1_1_7:5642709-5645102:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.9732055664062 2 590.779679 1179.5448 0.51686 0.00030535 0.30683 0.00018127 0.8237 0.00048662 590.7796430740852 166.95 0.34943 162.05 161.88 162.23 -4.8916 24 9 3 0 0 0 0.002544 1 32809 32809 63.167 60.536 1 137580000 47440 1520 31569 31589 46646 46646 -0.03778588347427103 TVDPHAPQP 9 Unmodified _TVDPHAPQP_ 0 0 0 REV__PIAS3|p.V123A|1|0.34|ENSG00000131788|chr1:145856663-145856663|A/G|missense_variant REV__PIAS3|p.V123A|1|0.34|ENSG00000131788|chr1:145856663-145856663|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2408447265625 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 152.49 1 147.74 147.24 148.24 -4.7523 0 0 0 0.19638 1 30302 30302 0.40827 0 1 + 47441 24468 31570 31590 46647 46647 -0.015319761420073519 TVDPSELSQRE 11 Unmodified _TVDPSELSQRE_ 0 0 0 tr|U7SIW4|U7SIW4_FUSNUGlutamatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02256PE=3SV=1 tr|U7SIW4|U7SIW4_FUSNUGlutamatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02256PE=3SV=1 tr|U7SIW4|U7SIW4_FUSNUGlutamatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02256PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.753662109375 2 630.806956 1259.59936 NaN NaN NaN NaN NaN NaN NaN 98.18 1 93.911 93.411 94.411 -4.2692 0 0 0 0.22501 1 18762 18762 12.241 0 1 47442 25927 31571 31591 46648 46648 -0.020056212666759166 TVDSAVQQA 9 Unmodified _TVDSAVQQA_ 0 0 0 nc|ENSG00000101004|Q9Y2I6-2|NINL;NINL|p.L1201Tfs*2|1|0.42|ENSG00000101004|chr20:25461617-25461618|-/T|frameshift_variant;ENSG00000101004|ENST00000278886|NINL;NINL|p.N497Tfs*23|1|0.4|ENSG00000101004|chr20:25489981-25489981|T/-|frameshift_variant nc|ENSG00000101004|Q9Y2I6-2|NINL nc|ENSG00000101004|Q9Y2I6-2|NINL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2427062988281 2 459.729989 917.445425 -0.072714 -3.3429E-05 1.9598 0.00090099 1.8871 0.00086756 459.7301495691557 40.705 0.94946 38.165 37.78 38.73 -2.5398 43 26 2 0 0 0 0.30056 1 7269 7269 2.6312 1.4164 1 2320200 47443 2032 31572 31592 46649 46649 -0.01659986241520528 TVDSDGRPD 9 Unmodified _TVDSDGRPD_ 0 0 0 nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19 nc|ENSG00000172046|O94966|USP19 nc|ENSG00000172046|O94966|USP19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7652893066406 2 481.214703 960.414853 0.085024 4.0915E-05 0.87658 0.00042182 0.9616 0.00046274 481.21525805623924 54.096 0.41681 50.961 50.661 51.078 -3.1352 22 11 3 0 0 0 0.77734 1 9935 9935 13.906 2.2658 1 4991400 47444 12463 31573 31593 46650 46650 -0.0669376462656146 TVDSPCPAE 9 Unmodified _TVDSPCPAE_ 0 0 0 REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2477111816406 2 459.6973 917.380048 0.5841 0.00026851 0.13414 6.1663E-05 0.71824 0.00033017 459.69726879549665 100.49 0.59137 100.49 100.1 100.69 0 26 16 2 0 0 0 0.80521 1 19681 19681 10.824 2.9138 1 1795000 + 47445 19301 31574 31594 46651 46651 -0.08194723758879263 TVDTSRLFR 9 Unmodified _TVDTSRLFR_ 0 0 0 ENSG00000168792|ENST00000307201|ABHD15 ENSG00000168792|ENST00000307201|ABHD15 ENSG00000168792|ENST00000307201|ABHD15 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7898559570312 2 547.80128 1093.58801 NaN NaN NaN NaN NaN NaN NaN 140.41 1 140.41 139.91 140.91 0 0 0 0 0.23277 1 27954 27954 13.906 0 1 47446 5934 31575 31595 46652 46652 0.044956462205163916 TVDVGYWIL 9 Unmodified _TVDVGYWIL_ 0 0 0 REV__nc|ENSG00000157985|Q9UPQ3-2|AGAP1 REV__nc|ENSG00000157985|Q9UPQ3-2|AGAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2719116210938 2 533.2844 1064.55425 -0.0039677 -2.1159E-06 -1.9658 -0.0010484 -1.9698 -0.0010505 533.2824697228311 83.686 0.5292 79.988 79.795 80.324 -3.6985 17 14 2 0 0 0 0.38188 2 16008 16008;16023 26.884 1.293 1 959620 + 47447 17316 31576 31596 46653;46654 46653 0.024552247287829232 TVDVGYWIL 9 Unmodified _TVDVGYWIL_ 0 0 0 REV__nc|ENSG00000157985|Q9UPQ3-2|AGAP1 REV__nc|ENSG00000157985|Q9UPQ3-2|AGAP1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.2844 1064.55425 0.52467 0.0002798 -6.0011 -0.0032003 -5.4765 -0.0029205 533.7824880657354 79.95 0.21094 79.95 79.828 80.039 0 -0.019051 -0.0030029 NaN 26.884 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 814600 + 47448 17316 31576 31596 0.024552247287829232 TVDVWYRRVD 10 Unmodified _TVDVWYRRVD_ 0 0 0 REV__TRIM5|p.N390Kfs*2|1|0.25|ENSG00000132256|chr11:5665121-5665122|-/T|frameshift_variant REV__TRIM5|p.N390Kfs*2|1|0.25|ENSG00000132256|chr11:5665121-5665122|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2156982421875 3 436.894688 1307.66223 NaN NaN NaN NaN NaN NaN NaN 122.45 1 117.76 117.26 118.26 -4.6873 0 0 0 0.22588 1 23514 23514 1.7423 0 1 + 47449 16102 31577 31597 46655 46655 0.020709893120283596 TVDWIAGNIY 10 Unmodified _TVDWIAGNIY_ 0 0 0 LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.I3028Nfs*2|1|0.39|ENSG00000168702|chr2:140492645-140492646|-/T|frameshift_variant;LRP1B|p.N3100Kfs*6|1|0.21|ENSG00000168702|chr2:140485468-140485469|-/T|frameshift_variant;LRP1B|p.Y3120*|1|0.16|ENSG00000168702|chr2:140485402-140485408|AGTAGGG/-|frameshift_variant;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant;LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant;LRP1B|p.T2640Pfs*5|1|0.12|ENSG00000168702|chr2:140525952-140525952|T/-|frameshift_variant;LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3115234375 2 576.290214 1150.56587 NaN NaN NaN NaN NaN NaN NaN 62.283 1 62.283 61.783 62.783 0 0 0 0 0.1839 1 11960 11960 31.268 2.7738 1 47450 5927 31578 31598 46656 46656 -0.0033857824791994062 TVDWNHIY 8 Unmodified _TVDWNHIY_ 0 0 0 ENST00000545377.5_1_5:73218933-73236687:+|nuORF ENST00000545377.5_1_5:73218933-73236687:+|nuORF ENST00000545377.5_1_5:73218933-73236687:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6820068359375 2 524.248349 1046.48214 -0.12906 -6.7659E-05 2.9773 0.0015608 2.8482 0.0014932 524.7520898040955 99.055 0.21085 94.923 94.747 94.957 -4.1326 6 5 2 0 0 0 0.98792 1 19446 19446 2.3027 0 1 1190100 47451 11119 31579 31599 46657 46657 -0.03923689624934923 TVEAMQQL 8 Unmodified _TVEAMQQL_ 0 0 0 REV__PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant REV__PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23101806640625 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 113.36 1 113.36 112.86 113.86 0 0 0 0 0.21323 1 22289 22289 14.582 0 1 + 47452 15988 31580 31600 46658 46658 -0.014418541082022784 TVEAQELLY 9 Unmodified _TVEAQELLY_ 0 0 0 REV__LRRC14B|p.T256Pfs*36|2|0.23|ENSG00000185028|chr5:192298-192298|C/-|frameshift_variant REV__LRRC14B|p.T256Pfs*36|2|0.23|ENSG00000185028|chr5:192298-192298|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2767944335938 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 155.64 1 150.36 149.86 150.86 -5.2854 0 0 0 0.22251 1 30188 30188 16.942 1.0951 1 + 47453 18931 31581 31601 46659 46659 0.009303131409296839 TVEAQVNI 8 Unmodified _TVEAQVNI_ 0 0 0 PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant;PRF1|p.L478*|1|0.29|ENSG00000180644|chr10:70598293-70598293|C/-|frameshift_variant;ENSG00000180644|ENST00000441259|PRF1 PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2359619140625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 56.843 1 56.843 56.343 57.343 0 0 0 0 0.11793 1 10858 10858 42.095 6.0504 1 47454 6686 31582 31602 46660 46660 0.019015056264720442 TVEAQVNI 8 Unmodified _TVEAQVNI_ 0 0 0 PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant;PRF1|p.L478*|1|0.29|ENSG00000180644|chr10:70598293-70598293|C/-|frameshift_variant;ENSG00000180644|ENST00000441259|PRF1 PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2167663574219 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 86.529 1 82.802 82.302 83.302 -3.727 0 0 0 0.21323 1 16914 16914 14.582 0 1 47455 6686 31582 31602 46661 46661 0.019015056264720442 TVEAQVNI 8 Unmodified _TVEAQVNI_ 0 0 0 PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant;PRF1|p.L478*|1|0.29|ENSG00000180644|chr10:70598293-70598293|C/-|frameshift_variant;ENSG00000180644|ENST00000441259|PRF1 PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2356262207031 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 70.66 1 67.193 66.693 67.693 -3.467 0 0 0 0.21486 1 13383 13383 12.532 0 1 47456 6686 31582 31602 46662 46662 0.019015056264720442 TVEAQVNI 8 Unmodified _TVEAQVNI_ 0 0 0 PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant;PRF1|p.L478*|1|0.29|ENSG00000180644|chr10:70598293-70598293|C/-|frameshift_variant;ENSG00000180644|ENST00000441259|PRF1 PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant PRF1|p.D430Tfs*10|1|0.24|ENSG00000180644|chr10:70598433-70598433|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2275695800781 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 72 1 68.462 67.962 68.962 -3.5385 0 0 0 0.21323 1 13654 13654 14.582 0 1 47457 6686 31582 31602 46663 46663 0.019015056264720442 TVECHRRY 8 Unmodified _TVECHRRY_ 0 0 0 REV__ENST00000588021.5_1_19:6007990-6026242:-|nuORF REV__ENST00000588021.5_1_19:6007990-6026242:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 355.2112121582031 3 355.174909 1062.5029 NaN NaN NaN NaN NaN NaN NaN 75.817 1 75.817 75.317 76.317 0 0 0 0 0.21486 1 14731 14731 1.6526 0 1 + 47458 23283 31583 31603 46664 46664 -0.02585422516926883 TVEDRGRP 8 Unmodified _TVEDRGRP_ 0 0 0 REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2412109375 2 465.243598 928.472643 NaN NaN NaN NaN NaN NaN NaN 64.502 1 61.504 61.004 62.004 -2.9975 0 0 0 0.21015 1 12476 12476 1.7423 1.0609 1 + 47459 16539 31584 31604 46665 46665 0.005545420895259667 TVEECTCEDCI 11 Unmodified _TVEECTCEDCI_ 0 0 0 nc|ENSG00000048462|Q02223-2|TNFRSF17;ENSG00000048462|ENST00000053243|TNFRSF17 nc|ENSG00000048462|Q02223-2|TNFRSF17 nc|ENSG00000048462|Q02223-2|TNFRSF17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7755737304688 2 622.727614 1243.44068 NaN NaN NaN NaN NaN NaN NaN 162.62 1 162.62 162.12 163.12 0 0 0 0 0.23324 1 32707 32707 5.7319 2.7366 1 47460 1228 31585 31605 46666 46666 -0.17130742553104028 TVEEFVEIE 9 Unmodified _TVEEFVEIE_ 0 0 0 tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1 tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1 tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7669067382812 2 547.766237 1093.51792 NaN NaN NaN NaN NaN NaN NaN 111.73 1 107.31 106.81 107.81 -4.4231 0 0 0 0.20628 1 22018 22018 21.747 4.8044 1 47461 26213 31586 31606 46667 46667 -0.02509696958600216 TVEFHQQRAEK 11 Unmodified _TVEFHQQRAEK_ 0 0 0 ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2242431640625 3 458.237114 1371.68951 NaN NaN NaN NaN NaN NaN NaN 90.776 1 86.998 86.498 87.498 -3.7779 0 0 0 0.22632 1 17373 17373 0.094841 0 1 47462 5695 31587 31607 46668 46668 0.018534728523945887 TVEGLEPY 8 Unmodified _TVEGLEPY_ 0 0 0 ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant;ROS1|p.L1167*|1|0.19|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant;ROS1|p.N1247Mfs*14|1|0.11|ENSG00000047936|chr6:117357918-117357918|T/-|frameshift_variant;ROS1|p.N1821Tfs*2|1|0.44|ENSG00000047936|chr6:117326319-117326319|T/-|frameshift_variant;ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1 ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant;ROS1|p.N1821Tfs*2|1|0.44|ENSG00000047936|chr6:117326319-117326319|T/-|frameshift_variant ROS1|p.L1167Ffs*26|1|0.27|ENSG00000047936|chr6:117359956-117359957|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7555847167969 2 454.224008 906.433463 0.25578 0.00011618 0.5646 0.00025646 0.82039 0.00037264 454.2240792801756 122.81 0.88154 118.21 117.84 118.72 -4.5926 32 24 2 0 0 0 1.0095 1 23572 23572 5.7604 0 1 1400500 47463 25620;1224 31588 31608 46669 46669 -0.023496029847137834 TVEKDIQP 8 Unmodified _TVEKDIQP_ 0 0 0 REV__nc|ENSG00000134765|Q08554-2|DSC1 REV__nc|ENSG00000134765|Q08554-2|DSC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2496643066406 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 42.715 1 40.109 39.609 40.609 -2.606 0 0 0 0.20294 1 7689 7689 23.148 0 1 + 47464 16226 31589 31609 46670 46670 0.01945774797957256 TVEKTWKA 8 Unmodified _TVEKTWKA_ 0 0 0 ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7688293457031 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 84.124 1 84.124 83.624 84.624 0 0 0 0 0.20462 1 16403 16403 21.747 2.3076 1 47465 4107 31590 31610 46671 46671 0.04098071414500737 TVEKTWKA 8 Unmodified _TVEKTWKA_ 0 0 0 ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7687072753906 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 87.627 1 83.877 83.377 84.377 -3.7501 0 0 0 0.20462 1 16765 16765 21.747 0 1 47466 4107 31590 31610 46672 46672 0.04098071414500737 TVELDELVY 9 Unmodified _TVELDELVY_ 0 0 0 REV__ENSG00000158623|ENST00000425248|COPG2;REV__ENSG00000181789|ENST00000314797|COPG1 REV__ENSG00000158623|ENST00000425248|COPG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.262451171875 2 540.776605 1079.53866 0.32793 0.00017734 0.0038134 2.0622E-06 0.33174 0.0001794 540.7765932912179 152.72 0.88858 147.96 147.45 148.34 -4.7647 54 24 3 0 0 0 0.085258 2 30375 30375;30380 60.39 2.9182 1 5529600 + 47467 17339;18739 31591 31611 46673;46674 46673 0.0020689342104560637 TVELDELVY 9 Unmodified _TVELDELVY_ 0 0 0 REV__ENSG00000158623|ENST00000425248|COPG2;REV__ENSG00000181789|ENST00000314797|COPG1 REV__ENSG00000158623|ENST00000425248|COPG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2642211914062 2 540.776605 1079.53866 0.32793 0.00017734 0.0038134 2.0622E-06 0.33174 0.0001794 540.7765932912179 152.72 0.88858 147.96 147.45 148.34 -4.7647 54 24 3 0 0 0 0.091177 1 30329 30329 50.855 0 1 5529600 + 47468 17339;18739 31591 31611 46675 46675 0.0020689342104560637 TVELDELVY 9 Unmodified _TVELDELVY_ 0 0 0 REV__ENSG00000158623|ENST00000425248|COPG2;REV__ENSG00000181789|ENST00000314797|COPG1 REV__ENSG00000158623|ENST00000425248|COPG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.278564453125 2 540.776605 1079.53866 0.46256 0.00025014 0.25067 0.00013556 0.71323 0.0003857 540.7768694907782 153.15 1.2956 147.93 147.57 148.87 -5.2209 71 36 3 0 0 0 0.52414 2 29766 29624;29766 18.135 2.2878 1 4727400 + 47469 17339;18739 31591 31611 46676;46677 46677 0.0020689342104560637 TVELLDLD 8 Unmodified _TVELLDLD_ 0 0 0 ENSG00000132874|ENST00000255226|SLC14A2 ENSG00000132874|ENST00000255226|SLC14A2 ENSG00000132874|ENST00000255226|SLC14A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24786376953125 2 459.244941 916.475328 0.57729 0.00026512 -0.56511 -0.00025952 0.012187 5.5967E-06 459.24463068313037 100.34 0.75757 100.34 99.898 100.66 0 56 21 3 0 0 0 0.40661 1 19629 19629 32.117 0 1 11402000 47470 3769 31592 31612 46678 46678 0.013749527038044107 TVEMQSYEY 9 Unmodified _TVEMQSYEY_ 0 0 0 REV__KIF13B|p.A592S|1|0.37|ENSG00000197892|chr8:29148616-29148616|C/A|missense_variant REV__KIF13B|p.A592S|1|0.37|ENSG00000197892|chr8:29148616-29148616|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3159790039062 2 575.242072 1148.46959 0.50587 0.000291 0.65839 0.00037873 1.1643 0.00066973 575.242420399462 106.63 1.0503 106.63 106.19 107.24 0 91 29 4 0 0 0 0.48644 1 21023 21023 20.454 0 1 31325000 + 47471 23715 31593 31613 46679 46679 -0.09870513870146169 TVEPLEKHL 9 Unmodified _TVEPLEKHL_ 0 0 0 REV__nc|ENSG00000074416|Q99685-2|MGLL REV__nc|ENSG00000074416|Q99685-2|MGLL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.275390625 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 142.44 1 142.44 141.94 142.94 0 0 0 0 0.22193 1 28400 28400 17.113 0 1 + 47472 14314 31594 31614 46680 46680 0.05690012131753974 TVEQPVFAA 9 Unmodified _TVEQPVFAA_ 0 0 0 ENSG00000183066|ENST00000328823|WBP2NL ENSG00000183066|ENST00000328823|WBP2NL ENSG00000183066|ENST00000328823|WBP2NL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24273681640625 2 481.2531 960.491647 -0.33436 -0.00016091 0.65815 0.00031674 0.32379 0.00015582 481.25333464501205 66.996 0.67012 66.996 66.698 67.368 0 30 18 2 0 0 0 0.45972 1 12898 12898 8.1555 7.4741 1 4930600 47473 6826 31595 31615 46681 46681 0.009820786605587273 TVERHQQTRKW 11 Unmodified _TVERHQQTRKW_ 0 0 0 REV__ENST00000513967.5_1_5:31535868-31538638:+|nuORF REV__ENST00000513967.5_1_5:31535868-31538638:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2657165527344 3 490.263774 1467.76949 NaN NaN NaN NaN NaN NaN NaN 63.154 1 59.897 59.397 60.397 -3.2567 0 0 0 0.22632 1 11852 11852 0.03141 0 1 + 47474 22546 31596 31616 46682 46682 0.05431959246243423 TVESRTRRAQ 10 Unmodified _TVESRTRRAQ_ 0 0 0 REV__nc|ENSG00000047346|Q32MH5-2|ATOSA REV__nc|ENSG00000047346|Q32MH5-2|ATOSA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.28271484375 2 602.331267 1202.64798 NaN NaN NaN NaN NaN NaN NaN 65.976 1 65.976 65.476 66.476 0 0 0 0 0.22588 1 12734 12734 10.074 0.6908 1 + 47475 14061 31597 31617 46683 46683 0.05476336883748445 TVEVGVAQA 9 Unmodified _TVEVGVAQA_ 0 0 0 REV__ENST00000215832.10_1_22:22115420-22115609:-|nuORF REV__ENST00000215832.10_1_22:22115420-22115609:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22833251953125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 81.244 1 77.556 77.056 78.056 -3.6879 0 0 0 0.19674 1 15481 15481 0.87518 0 1 + 47476 20000 31598 31618 46684 46684 0.019015056264606756 TVEVIPRSG 9 Unmodified _TVEVIPRSG_ 0 0 0 CON__P00735 CON__P00735 CON__P00735 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 479.2802429199219 2 479.271824 956.529095 NaN NaN NaN NaN NaN NaN NaN 154.61 1 149.36 148.86 149.86 -5.2526 0 0 0 0.19162 1 29979 29979 2.6312 2.223 1 + 47477 648 31599 31619 46685 46685 0.04909169926202139 TVEYCEPC 8 Unmodified _TVEYCEPC_ 0 0 0 REV__DLG3|p.E469*|1|0.18|ENSG00000082458|chrX:70454311-70454312|-/TGAA|frameshift_variant REV__DLG3|p.E469*|1|0.18|ENSG00000082458|chrX:70454311-70454312|-/TGAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.04034423828125 3 315.122711 942.346305 NaN NaN NaN NaN NaN NaN NaN 8.2066 1 8.2066 7.7066 8.7066 0 0 0 0 0.21486 1 832 832 0.45834 0 1 + 47478 13691 31600 31620 46686 46686 -0.12717468522282616 TVFAESQISL 10 Unmodified _TVFAESQISL_ 0 0 0 ENSG00000204687|ENST00000377127|MAS1L ENSG00000204687|ENST00000377127|MAS1L ENSG00000204687|ENST00000377127|MAS1L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.790283203125 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 167.69 1 162.8 162.3 163.3 -4.8916 0 0 0 0.22588 1 33008 33008 13.042 0.51092 1 47479 7606 31601 31621 46687 46687 0.022500020322468117 TVFHKHYL 8 Unmodified _TVFHKHYL_ 0 0 0 TYK2|p.R895H|1|0.28|ENSG00000105397|chr19:10354543-10354543|C/T|missense_variant TYK2|p.R895H|1|0.28|ENSG00000105397|chr19:10354543-10354543|C/T|missense_variant TYK2|p.R895H|1|0.28|ENSG00000105397|chr19:10354543-10354543|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2683715820312 2 522.784902 1043.55525 -0.34252 -0.00017906 -2.4945 -0.0013041 -2.837 -0.0014832 522.7831907809633 100.85 0.58354 96.556 96.328 96.912 -4.297 24 16 3 0 0 0 1.0095 1 19280 19280 5.7604 0 1 1156700 47480 26540 31602 31622 46688 46688 0.03521483888312105 TVFHRDCYY 9 Unmodified _TVFHRDCYY_ 0 0 0 ENST00000452760.2_1_17:20516367-20517318:+|nuORF ENST00000452760.2_1_17:20516367-20517318:+|nuORF ENST00000452760.2_1_17:20516367-20517318:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.285888671875 2 602.266216 1202.51788 NaN NaN NaN NaN NaN NaN NaN 140.13 1 135.28 134.78 135.78 -4.8492 0 0 0 0.23508 1 27020 27020 4.756 0.81161 1 47481 9998 31603 31623 46689 46689 -0.07527975439597867 TVFNNRDL 8 Unmodified _TVFNNRDL_ 0 0 0 REV__TSPAN19|p.L43V|1|0.06|ENSG00000231738|chr12:85029731-85029731|A/C|missense_variant REV__TSPAN19|p.L43V|1|0.06|ENSG00000231738|chr12:85029731-85029731|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25445556640625 2 489.753798 977.493044 -0.073811 -3.6149E-05 -0.058959 -2.8875E-05 -0.13277 -6.5025E-05 489.7537287651154 130.13 0.59306 125.36 125.04 125.63 -4.7725 21 16 2 0 0 0 0.95284 1 25082 25082 5.2307 0 1 896490 + 47482 25492 31604 31624 46690 46690 0.0033971274932582674 TVFPFPRV 8 Unmodified _TVFPFPRV_ 0 0 0 REV__ENSG00000161692|ENST00000315005|DBF4B REV__ENSG00000161692|ENST00000315005|DBF4B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7774658203125 2 481.776545 961.538538 0.021333 1.0278E-05 1.0726 0.00051674 1.0939 0.00052702 481.7769687252516 32.183 0.38455 32.183 31.978 32.363 0 14 10 2 0 0 0 0.71273 1 5869 5869 12.532 1.4171 1 947030 + 47483 17466 31605 31625 46691 46691 0.056229830023767136 TVFPKQYP 8 Unmodified _TVFPKQYP_ 0 0 0 SPON2|p.A55V|1|0.37|ENSG00000159674|chr4:1171908-1171908|G/A|missense_variant SPON2|p.A55V|1|0.37|ENSG00000159674|chr4:1171908-1171908|G/A|missense_variant SPON2|p.A55V|1|0.37|ENSG00000159674|chr4:1171908-1171908|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2681884765625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 157.48 1 152.69 152.19 153.19 -4.7885 0 0 0 0.22692 1 31319 31319 0.25148 0 1 47484 25785 31606 31626 46692 46692 0.027349729028514957 TVFPKQYP 8 Unmodified _TVFPKQYP_ 0 0 0 SPON2|p.A55V|1|0.37|ENSG00000159674|chr4:1171908-1171908|G/A|missense_variant SPON2|p.A55V|1|0.37|ENSG00000159674|chr4:1171908-1171908|G/A|missense_variant SPON2|p.A55V|1|0.37|ENSG00000159674|chr4:1171908-1171908|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.257568359375 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 158.2 1 152.93 152.43 153.43 -5.2712 0 0 0 0.23538 1 30693 30693 0.25148 0.18761 1 47485 25785 31606 31626 46693 46693 0.027349729028514957 TVFQEEYQ 8 Unmodified _TVFQEEYQ_ 0 0 0 REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2672729492188 2 522.237647 1042.46074 NaN NaN NaN NaN NaN NaN NaN 129.29 1 124.47 123.97 124.97 -4.817 0 0 0 0.22934 1 24819 24819 0.12286 0 1 + 47486 14444 31607 31627 46694 46694 -0.05879119444330172 TVFQEEYQ 8 Unmodified _TVFQEEYQ_ 0 0 0 REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2626342773438 2 522.237647 1042.46074 NaN NaN NaN NaN NaN NaN NaN 129.13 1 124.39 123.89 124.89 -4.7408 0 0 0 0.23366 1 24849 24849 0.12286 0 1 + 47487 14444 31607 31627 46695 46695 -0.05879119444330172 TVFRPTSV 8 Unmodified _TVFRPTSV_ 0 0 0 ENST00000495184.5_1_9:286530-289568:+|nuORF ENST00000495184.5_1_9:286530-289568:+|nuORF ENST00000495184.5_1_9:286530-289568:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7557067871094 2 453.75581 905.497067 -0.32758 -0.00014864 0.50883 0.00023088 0.18125 8.2242E-05 453.75596330562263 104.77 0.59431 100.55 100.27 100.86 -4.2183 27 16 2 0 0 0 0.69031 1 20668 20668 15.847 1.9411 1 3225500 47488 10564 31608 31628 46696 46696 0.040538022430382625 TVFSRSQVY 9 Unmodified _TVFSRSQVY_ 0 0 0 ENSG00000188816|ENST00000339992|HMX2 ENSG00000188816|ENST00000339992|HMX2 ENSG00000188816|ENST00000339992|HMX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7965087890625 2 543.782556 1085.55056 0.76175 0.00041423 0.0010956 5.9574E-07 0.76285 0.00041482 543.7828641637442 108.51 0.58664 104.37 104.05 104.64 -4.135 24 16 2 0 0 0 0.52396 1 20865 20865 18.146 0.011366 1 1430300 47489 7197 31609 31629 46697 46697 0.01120554954900399 TVFVKEKHY 9 Unmodified _TVFVKEKHY_ 0 0 0 ENSG00000169618|ENST00000303786|PROKR1;ENSG00000101292|ENST00000678254|PROKR2 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3226318359375 2 575.816399 1149.61824 0.44596 0.00025679 4.4143 0.0025418 4.8602 0.0027986 576.3211464389049 159.54 0.18398 154.27 154.13 154.31 -5.2712 6 4 2 0 0 0 0.43879 1 30947 30947 2.6312 0.70373 1 1373700 47490 5993 31610 31630 46698 46698 0.04942004885697315 TVGAQDDPLAY 11 Unmodified _TVGAQDDPLAY_ 0 0 0 nc|ENSG00000188707|Q96FA7|ZBED10P nc|ENSG00000188707|Q96FA7|ZBED10P nc|ENSG00000188707|Q96FA7|ZBED10P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3305053710938 2 575.274761 1148.53497 0.16902 9.7231E-05 0.26403 0.00015189 0.43304 0.00024912 575.2748062654796 140.95 1.2728 135.96 135.43 136.7 -4.9877 80 35 3 0 0 0 0.61937 2 27148 27119;27148 17.113 0.96379 1 10826000 47491 12532 31611 31631 46699;46700 46700 -0.033357763528101714 TVGAQDDPLAY 11 Unmodified _TVGAQDDPLAY_ 0 0 0 nc|ENSG00000188707|Q96FA7|ZBED10P nc|ENSG00000188707|Q96FA7|ZBED10P nc|ENSG00000188707|Q96FA7|ZBED10P MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 575.274761 1148.53497 0.023244 1.3372E-05 0.43917 0.00025264 0.46242 0.00026602 575.2749561106901 140.56 1.3686 135.91 135.41 136.78 -4.6493 -0.02387 0.00011669 NaN 17.113 83 38 3 NaN NaN NaN NaN 0 NaN NaN 0 9793300 47492 12532 31611 31631 -0.033357763528101714 TVGATLTSV 9 Unmodified _TVGATLTSV_ 0 0 0 nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2542419433594 2 424.739825 847.465098 -0.068996 -2.9305E-05 0.27719 0.00011773 0.20819 8.8427E-05 424.73990243093994 134.21 0.73816 129.39 129.02 129.76 -4.8175 37 20 2 0 0 0 0.54354 1 25779 25779 16.942 0 1 6344500 47493 1306 31612 31632 46701 46701 0.03526389769228899 TVGATTSL 8 Unmodified _TVGATTSL_ 0 0 0 ENSG00000177202|ENST00000321762|SPACA4 ENSG00000177202|ENST00000321762|SPACA4 ENSG00000177202|ENST00000321762|SPACA4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20452880859375 2 375.205618 748.396684 NaN NaN NaN NaN NaN NaN NaN 80.993 1 80.993 80.493 81.493 0 0 0 0 0.2074 1 15770 15770 19.439 0 1 47494 6501 31613 31633 46702 46702 0.01242145189371513 TVGDNDDDDD 10 Unmodified _TVGDNDDDDD_ 0 0 0 REV__ENSG00000186340|ENST00000617924|THBS2 REV__ENSG00000186340|ENST00000617924|THBS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2647094726562 2 540.68363 1079.35271 0.46124 0.00024939 -2.339 -0.0012646 -1.8777 -0.0010153 541.1823885568133 153.11 0.17964 147.89 147.79 147.97 -5.2209 5 4 2 0 0 0 0.91149 1 29662 29662 1.6526 0 1 530740 + 47495 19028 31614 31634 46703 46703 -0.18379580556234032 TVGDVDKEPK 10 Unmodified _TVGDVDKEPK_ 0 0 0 REV__ENSG00000120254|ENST00000367321|MTHFD1L REV__ENSG00000120254|ENST00000367321|MTHFD1L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7937622070312 2 544.285128 1086.5557 0.12639 6.8793E-05 -0.19593 -0.00010664 -0.069544 -3.7852E-05 544.2851265576256 18.246 0.45871 16.935 16.649 17.108 -1.3109 27 12 3 0 0 0 0.91149 1 2916 2916 6.2058 0 1 429280 + 47496 15615 31615 31635 46704 46704 0.015888140268543793 TVGEWPRQA 9 Unmodified _TVGEWPRQA_ 0 0 0 ENST00000219478.10_1_16:4801199-4801274:-|nuORF ENST00000219478.10_1_16:4801199-4801274:-|nuORF ENST00000219478.10_1_16:4801199-4801274:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.266845703125 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 15.988 1 15.988 15.488 16.488 0 0 0 0 0.23508 1 2466 2466 6.7232 0.99131 1 47497 8129 31616 31636 46705 46705 3.401640651645721E-05 TVGFLKPSRF 10 Unmodified _TVGFLKPSRF_ 0 0 0 REV__tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1 REV__tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32958984375 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 141.82 1 136.84 136.34 137.34 -4.9877 0 0 0 0.22588 1 27319 27319 12.241 3.4953 1 + 47498 25094 31617 31637 46706 46706 0.08057997639662062 TVGHIILSEH 10 Unmodified _TVGHIILSEH_ 0 0 0 ENSG00000153208|ENST00000295408|MERTK ENSG00000153208|ENST00000295408|MERTK ENSG00000153208|ENST00000295408|MERTK MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 553.7167358398438 2 553.303655 1104.59276 0.17573 9.7233E-05 -0.80117 -0.00044329 -0.62544 -0.00034606 553.8082797090482 155.16 0.1825 149.88 149.75 149.93 -5.2854 8 4 3 0 0 0 1.1309 1 30077 30077 0.013265 0 1 862740 47499 4963 31618 31638 46707 46707 0.044645303632933064 TVGIKHIKF 9 Unmodified _TVGIKHIKF_ 0 0 0 EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant;EML6|p.R1767Efs*19|1|0.37|ENSG00000214595|chr2:54964127-54964127|C/-|frameshift_variant;nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6 EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2627563476562 2 521.824027 1041.6335 -0.64634 -0.00033727 1.5248 0.00079568 0.87848 0.00045841 522.3256660599169 139.93 0.20476 134.98 134.91 135.12 -4.952 6 5 2 0 0 0 0.87888 1 26926 26926 0.52476 0 1 3773700 47500 943 31619 31639 46708 46708 0.11434916473558587 TVGISIGLFR 10 Unmodified _TVGISIGLFR_ 0 0 0 REV__nc|ENSG00000106025|O95859-2|TSPAN12 REV__nc|ENSG00000106025|O95859-2|TSPAN12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2667236328125 2 531.818941 1061.62333 -0.0054627 -2.9051E-06 0.14112 7.505E-05 0.13566 7.2145E-05 531.8189705025287 88.062 0.93542 88.062 87.642 88.578 0 83 26 4 0 0 0 0.59928 1 17148 17148 19.257 1.1106 1 52529000 + 47501 15029 31620 31640 46709 46709 0.09498308748334239 TVGISIGLFR 10 Unmodified _TVGISIGLFR_ 0 0 0 REV__nc|ENSG00000106025|O95859-2|TSPAN12 REV__nc|ENSG00000106025|O95859-2|TSPAN12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.28662109375 2 531.818941 1061.62333 0.17435 9.2723E-05 -0.13008 -6.9177E-05 0.044276 2.3547E-05 531.8188030339395 91.543 1.0452 87.735 87.267 88.312 -3.8083 91 29 5 0 0 0 0.57735 1 17557 17557 20.454 2.3186 1 46811000 + 47502 15029 31620 31640 46710 46710 0.09498308748334239 TVGKESIDL 9 Unmodified _TVGKESIDL_ 0 0 0 nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8 nc|ENSG00000183785|Q9NY65-2|TUBA8 nc|ENSG00000183785|Q9NY65-2|TUBA8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25408935546875 2 481.263665 960.512776 0.072237 3.4765E-05 -0.084747 -4.0786E-05 -0.01251 -6.0204E-06 481.26350847832384 91.127 0.82681 87.319 86.892 87.719 -3.8083 38 23 2 0 0 0 0.60805 1 17520 17520 12.532 0 1 2524800 47503 6871 31621 31641 46711 46711 0.030940439694290944 TVGLDEFTY 9 Unmodified _TVGLDEFTY_ 0 0 0 REV__tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1 REV__tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2662963867188 2 522.747847 1043.48114 0.61172 0.00031977 -0.34592 -0.00018083 0.2658 0.00013895 522.7476204047365 102.07 0.6629 102.07 101.89 102.55 0 26 18 2 0 0 0 0.65155 1 20087 20087 21.747 0 1 2593100 + 47504 25335 31622 31642 46712 46712 -0.03885948784500215 TVGLGIHTLLQ 11 Unmodified _TVGLGIHTLLQ_ 0 0 0 REV__OR52A5|p.F142L|1|0.15|ENSG00000171944|chr11:5132219-5132219|A/G|missense_variant REV__OR52A5|p.F142L|1|0.15|ENSG00000171944|chr11:5132219-5132219|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3389282226562 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 160.83 1 155.6 155.1 156.1 -5.2299 0 0 0 0.23018 1 31232 31232 8.1555 1.4324 1 + 47505 24411 31623 31643 46713 46713 0.10169962948521061 TVGLLLEHSFE 11 Unmodified _TVGLLLEHSFE_ 0 0 0 EMC10|p.P194Qfs*45|1|0.19|ENSG00000161671|chr19:50480756-50480756|C/-|frameshift_variant;nc|ENSG00000161671|Q5UCC4-2|EMC10;ENSG00000161671|ENST00000334976|EMC10 EMC10|p.P194Qfs*45|1|0.19|ENSG00000161671|chr19:50480756-50480756|C/-|frameshift_variant EMC10|p.P194Qfs*45|1|0.19|ENSG00000161671|chr19:50480756-50480756|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7730712890625 2 622.829703 1243.64485 NaN NaN NaN NaN NaN NaN NaN 149.13 1 149.13 148.63 149.63 0 0 0 0 0.22943 1 29854 29854 8.7454 1.1365 1 47506 940 31624 31644 46714 46714 0.03277648986386339 TVGLWALMFL 10 Unmodified _TVGLWALMFL_ 0 0 0 REV__GPM6A|p.M154Ifs*48|1|0.08|ENSG00000150625|chr4:175651913-175651914|-/CTTTTCTACCACAGAG|frameshift_variant REV__GPM6A|p.M154Ifs*48|1|0.08|ENSG00000150625|chr4:175651913-175651914|-/CTTTTCTACCACAGAG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3313598632812 2 575.820095 1149.62564 0.29768 0.00017141 1.7774 0.0010235 2.0751 0.0011949 576.3222296330082 146.93 0.1709 146.93 146.81 146.98 0 5 4 2 0 0 0 0.87854 1 29368 29368 9.3831 4.0862 1 2870300 + 47507 17035 31625 31645 46715 46715 0.05681021161763056 TVGMFIFF 8 Unmodified _TVGMFIFF_ 0 0 0 REV__ENSG00000205329|ENST00000641740|OR6C3 REV__ENSG00000205329|ENST00000641740|OR6C3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2449645996094 2 481.246232 960.477911 NaN NaN NaN NaN NaN NaN NaN 27.145 1 25.223 24.723 25.723 -1.9222 0 0 0 0.21486 1 4523 4523 12.532 0.89125 1 + 47508 19587 31626 31646 46716 46716 -0.003908703722231621 TVGPEFGKGIF 11 Unmodified _TVGPEFGKGIF_ 0 0 0 REV__CON__Q2KJC7 REV__CON__Q2KJC7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3111572265625 2 576.308406 1150.60226 NaN NaN NaN NaN NaN NaN NaN 160.23 1 160.23 159.73 160.73 0 0 0 0 0.22501 1 32173 32173 12.241 3.4953 1 + + 47509 13537 31627 31647 46717 46717 0.032982986488150345 TVGQEDYDRLR 11 Unmodified _TVGQEDYDRLR_ 0 0 0 RHOA|p.A61V|1|0.27|ENSG00000067560|chr3:49368523-49368523|G/A|missense_variant RHOA|p.A61V|1|0.27|ENSG00000067560|chr3:49368523-49368523|G/A|missense_variant RHOA|p.A61V|1|0.27|ENSG00000067560|chr3:49368523-49368523|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 676.332275390625 2 676.333672 1350.65279 NaN NaN NaN NaN NaN NaN NaN 174.77 1 169.88 169.38 170.38 -4.8916 0 0 0 0.23379 1 34805 34805 5.2969 0 1 47510 25608 31628 31648 46718 46718 -0.008508237641535743 TVGRKIEI 8 Unmodified _TVGRKIEI_ 0 0 0 REV__ENSG00000169189|ENST00000361439|NSMCE1 REV__ENSG00000169189|ENST00000361439|NSMCE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2385559082031 2 458.284734 914.554916 0.2281 0.00010454 0.027604 1.2651E-05 0.25571 0.00011719 458.28470545515063 72.376 0.75473 68.748 68.337 69.091 -3.6275 33 20 2 0 0 0 0.0942 1 13640 13640 64.236 2.8788 1 5086800 + 47511 18083 31629 31649 46719 46719 0.09422064168461475 TVGRRMLI 8 Unmodified _TVGRRMLI_ 0 0 0 REV__ENST00000477571.5_1_7:139997281-140048561:-|nuORF REV__ENST00000477571.5_1_7:139997281-140048561:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.85205078125 3 315.860262 944.558955 NaN NaN NaN NaN NaN NaN NaN 9.4425 1 8.6482 8.1482 9.1482 -0.79424 0 0 0 0.21486 1 1091 1091 0.45834 0 1 + 47512 22121 31630 31650 46720 46720 0.08445830390542142 TVGSLIKQA 9 Unmodified _TVGSLIKQA_ 0 0 0 ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2308349609375 2 458.776742 915.538931 0.22021 0.00010103 0.85203 0.00039089 1.0722 0.00049192 458.77681054223007 19.961 0.30931 19.961 19.825 20.134 0 12 8 2 0 0 0 0.84208 1 3294 3294 7.2892 0 1 282230 47513 6202 31631 31651 46721 46721 0.07778357931567825 TVGSLIKQA 9 Unmodified _TVGSLIKQA_ 0 0 0 ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.776742 915.538931 0.36956 0.00016954 0.033053 1.5164E-05 0.40261 0.00018471 458.77670826106635 21.448 0.28303 19.974 19.769 20.052 -1.4742 0.017581 -0.00044118 NaN 7.2892 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 331400 47514 6202 31631 31651 0.07778357931567825 TVGTILWIY 9 Unmodified _TVGTILWIY_ 0 0 0 ENST00000302764.8_1_5:162880677-162880902:-|nuORF ENST00000302764.8_1_5:162880677-162880902:-|nuORF ENST00000302764.8_1_5:162880677-162880902:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2852172851562 2 533.302593 1064.59063 NaN NaN NaN NaN NaN NaN NaN 159.51 1 159.51 159.01 160.01 0 0 0 0 0.23508 1 32026 32026 7.9102 0 1 47515 8577 31632 31652 46722 46722 0.060921016254724236 TVGTILWIY 9 Unmodified _TVGTILWIY_ 0 0 0 ENST00000302764.8_1_5:162880677-162880902:-|nuORF ENST00000302764.8_1_5:162880677-162880902:-|nuORF ENST00000302764.8_1_5:162880677-162880902:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2743530273438 2 533.302593 1064.59063 0.22006 0.00011736 0.84243 0.00044927 1.0625 0.00056663 533.301324639122 117.15 0.13986 112.66 112.56 112.7 -4.486 5 3 2 0 0 0 0.8319 1 23082 23082 7.9102 0 1 497140 47516 8577 31632 31652 46723 46723 0.060921016254724236 TVGTLKTLF 9 Unmodified _TVGTLKTLF_ 0 0 0 REV__tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1 REV__tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2586669921875 2 490.294768 978.574983 0.15803 7.748E-05 0.064008 3.1383E-05 0.22204 0.00010886 490.29476573354884 141.34 0.7278 136.69 136.26 136.99 -4.6493 35 20 2 0 0 0 0.41081 1 27835 27835 0.12781 0 1 5114300 + 47517 25458 31633 31653 46724 46724 0.08483815108422732 TVGTTKPG 8 Unmodified _TVGTTKPG_ 0 0 0 ENSG00000100167|ENST00000644076|SEPTIN3 ENSG00000100167|ENST00000644076|SEPTIN3 ENSG00000100167|ENST00000644076|SEPTIN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2149658203125 2 380.713611 759.412668 -0.06096 -2.3208E-05 0.074958 2.8538E-05 0.013998 5.3291E-06 380.71358744583466 37.378 0.55472 37.378 37.093 37.647 0 34 15 3 0 0 0 0.69887 1 6851 6851 14.582 1.0738 1 3120000 47518 1935 31634 31654 46725 46725 0.023338514262945864 TVGVGRARF 9 Unmodified _TVGVGRARF_ 0 0 0 ENST00000465030.1_1_X:70280941-70288225:-|nuORF;ENST00000490561.6_1_X:70280209-70288156:-|nuORF;nc|ENSG00000147164|Q9UMY4-3|SNX12;ENSG00000147164|ENST00000374274|SNX12;nc|ENSG00000147164|Q9UMY4-1|SNX12 ENST00000465030.1_1_X:70280941-70288225:-|nuORF ENST00000465030.1_1_X:70280941-70288225:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7789001464844 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 148.75 1 144.04 143.54 144.54 -4.7095 0 0 0 0.23508 1 29540 29540 12.532 2.3482 1 47519 4688 31635 31655 46726 46726 0.06343715602793054 TVGVHGPIEVS 11 Unmodified _TVGVHGPIEVS_ 0 0 0 tr|U7T591|U7T591_FUSNULUDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00169PE=4SV=1 tr|U7T591|U7T591_FUSNULUDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00169PE=4SV=1 tr|U7T591|U7T591_FUSNULUDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00169PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.767333984375 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 126.96 1 126.96 126.46 127.46 0 0 0 0 0.1931 1 25060 25060 20.415 2.2682 1 47520 26458 31636 31656 46727 46727 0.03372824126381602 TVGWEKFL 8 Unmodified _TVGWEKFL_ 0 0 0 REV__nc|ENSG00000121671|Q49AN0-2|CRY2 REV__nc|ENSG00000121671|Q49AN0-2|CRY2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2726135253906 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 158.2 1 152.93 152.43 153.43 -5.2712 0 0 0 0.21323 1 30694 30694 14.582 0 1 + 47521 15663 31637 31657 46728 46728 0.027349729028628644 TVGYKRMRL 9 Unmodified _TVGYKRMRL_ 0 0 0 ENSG00000120057|ENST00000266066|SFRP5 ENSG00000120057|ENST00000266066|SFRP5 ENSG00000120057|ENST00000266066|SFRP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2174987792969 3 375.218337 1122.63318 -0.94401 -0.00035421 -2.3197 -0.00087039 -3.2637 -0.0012246 375.2174380446732 24.475 0.58359 22.622 22.363 22.947 -1.8534 30 16 3 0 0 0 0.55539 1 4001 4001 16.149 0.90062 1 874160 47522 3116 31638 31658 46729 46729 0.07677173482056787 TVHANLLARE 10 Unmodified _TVHANLLARE_ 0 0 0 REV__ENSG00000215186|ENST00000421285|GOLGA6B REV__ENSG00000215186|ENST00000421285|GOLGA6B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2124938964844 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 89.403 1 85.626 85.126 86.126 -3.7779 0 0 0 2.8426 1 17119 17119 0.0013812 0 1 + 47523 16577 31639 31659 46730 46730 0.058153351118335195 TVHCKEKA 8 Unmodified _TVHCKEKA_ 0 0 0 ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0|OTOG;OTOG|p.Q1138Rfs*24|1|0.12|ENSG00000188162|chr11:17594130-17594130|C/-|frameshift_variant ENSG00000188162|ENST00000399397|OTOG ENSG00000188162|ENST00000399397|OTOG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2388916015625 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 94.659 1 94.659 94.159 95.159 0 0 0 0 0.21486 1 18538 18538 12.532 2.3482 1 47524 7155 31640 31660 46731 46731 0.003732718485252917 TVHERCVSSNI 11 Unmodified _TVHERCVSSNI_ 0 0 0 DGKG|p.R316S|1|0.07|ENSG00000058866|chr3:186272306-186272306|T/G|missense_variant DGKG|p.R316S|1|0.07|ENSG00000058866|chr3:186272306-186272306|T/G|missense_variant DGKG|p.R316S|1|0.07|ENSG00000058866|chr3:186272306-186272306|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7638549804688 2 622.806236 1243.59792 NaN NaN NaN NaN NaN NaN NaN 161.99 1 156.8 156.3 157.3 -5.1878 0 0 0 0.21129 1 31444 31444 16.149 1.3108 1 47525 824 31641 31661 46732 46732 -0.014135338363985284 TVHERHYFD 9 Unmodified _TVHERHYFD_ 0 0 0 REV__ENST00000590637.1_1_17:40257054-40259850:-|nuORF REV__ENST00000590637.1_1_17:40257054-40259850:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.280517578125 2 602.280712 1202.54687 NaN NaN NaN NaN NaN NaN NaN 170.84 1 166.05 165.55 166.55 -4.7898 0 0 0 0.23508 1 34698 34698 7.9102 0.62092 1 + 47526 15135 31642 31662 46733 46733 -0.04630114818974107 TVHFGQAN 8 Unmodified _TVHFGQAN_ 0 0 0 ENST00000462245.1_1_9:126202450-126219642:-|nuORF ENST00000462245.1_1_9:126202450-126219642:-|nuORF ENST00000462245.1_1_9:126202450-126219642:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2147216796875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 129.06 1 129.06 128.56 129.56 0 0 0 0 0.21486 1 25492 25492 7.9102 2.6795 1 47527 10083 31643 31663 46734 46734 -0.027245144849530334 TVHIGDLQKL 10 Unmodified _TVHIGDLQKL_ 0 0 0 REV__nc|ENSG00000172349|Q14005-2|IL16 REV__nc|ENSG00000172349|Q14005-2|IL16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.22125244140625 3 375.220513 1122.63971 NaN NaN NaN NaN NaN NaN NaN 94.863 1 94.863 94.363 95.363 0 0 0 0 0.22588 1 18578 18578 3.0723 0.57378 1 + 47528 18284 31644 31664 46735 46735 0.08329389914410967 TVHIPKFG 8 Unmodified _TVHIPKFG_ 0 0 0 ENST00000379731.4_1_9:33113141-33113378:-|nuORF ENST00000379731.4_1_9:33113141-33113378:-|nuORF ENST00000379731.4_1_9:33113141-33113378:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.11383056640625 2 449.760895 897.507237 0.26884 0.00012091 0.030294 1.3625E-05 0.29914 0.00013454 449.7608174414346 71.652 0.49593 68.024 67.737 68.233 -3.6275 26 13 3 0 0 0 1.0147 1 13555 13555 2.3027 0 1 2164000 47529 9305 31645 31665 46736 46736 0.054384099682806664 TVHKRKLKA 9 Unmodified _TVHKRKLKA_ 0 0 0 CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant;nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-9|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23 CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2748413085938 2 540.85365 1079.69275 0.30067 0.00016262 3.3327 0.0018025 3.6334 0.0019651 541.3581903089228 115.4 0.21074 110.85 110.76 110.97 -4.555 6 5 2 0 0 0 0.87974 1 22162 22162 1.8442 0.36234 1 789400 47530 462 31646 31666 46737 46737 0.1560881248772148 TVHLDGRRSY 10 Unmodified _TVHLDGRRSY_ 0 0 0 REV__nc|ENSG00000175426|P29120-2|PCSK1 REV__nc|ENSG00000175426|P29120-2|PCSK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2738647460938 2 602.315086 1202.61562 NaN NaN NaN NaN NaN NaN NaN 43.888 1 41.122 40.622 41.622 -2.7661 0 0 0 0.22588 1 7932 7932 6.7232 0 1 + 47531 18476 31647 31667 46738 46738 0.022415494807546565 TVHLIQLLEN 10 Unmodified _TVHLIQLLEN_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.26904296875 2 590.340238 1178.66592 NaN NaN NaN NaN NaN NaN NaN 156.22 1 156.22 155.72 156.72 0 0 0 0 0.22588 1 31335 31335 9.3831 0 1 47532 7767 31648 31668 46739 46739 0.08373659085941654 TVHPLSAPYP 10 Unmodified _TVHPLSAPYP_ 0 0 0 nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1;ENSG00000178188|ENST00000684370|SH2B1;ENST00000569471.1_1_16:28880556-28883354:+|nuORF nc|ENSG00000178188|Q9NRF2-2|SH2B1 nc|ENSG00000178188|Q9NRF2-2|SH2B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2659301757812 2 541.287474 1080.5604 0.09351 5.0616E-05 -0.10487 -5.6766E-05 -0.011362 -6.1503E-06 541.2872863270691 113.8 0.80705 109.34 108.83 109.63 -4.4538 35 22 2 0 0 0 0.30531 1 22443 22443 4.6586 4.279 1 1402000 47533 6564 31649 31669 46740 46740 0.023337429602634074 TVHQNSVFH 9 Unmodified _TVHQNSVFH_ 0 0 0 ENST00000462722.5_1_9:131595865-131599118:-|nuORF;nc|ENSG00000286112|Q16773-2|KYAT1;ENSG00000171097|ENST00000302586|KYAT1 ENST00000462722.5_1_9:131595865-131599118:-|nuORF ENST00000462722.5_1_9:131595865-131599118:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.0732727050781 3 356.845557 1067.51484 0.030945 1.1043E-05 0.31556 0.00011261 0.34651 0.00012365 356.8455770958982 24.713 0.41477 23.179 22.85 23.265 -1.5342 18 11 2 0 0 0 0.87262 1 4006 4006 5.2969 0 1 467110 47534 6121 31650 31670 46741 46741 -0.01621482502082472 TVHYIKQKY 9 Unmodified _TVHYIKQKY_ 0 0 0 ENST00000445028.1_1_X:43137608-43138196:-|nuORF ENST00000445028.1_1_X:43137608-43138196:-|nuORF ENST00000445028.1_1_X:43137608-43138196:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2743530273438 2 590.329673 1178.64479 NaN NaN NaN NaN NaN NaN NaN 134.96 1 130.32 129.82 130.82 -4.6399 0 0 0 0.23508 1 26616 26616 10.824 3.215 1 47535 9927 31651 31671 46742 46742 0.06261693777059918 TVIAKVNNV 9 Unmodified _TVIAKVNNV_ 0 0 0 nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1 nc|ENSG00000113407|P26639-2|TARS1 nc|ENSG00000113407|P26639-2|TARS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7380676269531 2 479.290017 956.565481 -0.20737 -9.9388E-05 0.34173 0.00016379 0.13436 6.4399E-05 479.2901898014843 53.671 0.79861 50.787 50.317 51.116 -2.8837 56 22 4 0 0 0 0.061087 1 10200 10200 71.922 26.223 1 8187000 47536 2740 31652 31672 46743 46743 0.0854604682289164 TVIAKVNNV 9 Unmodified _TVIAKVNNV_ 0 0 0 nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1 nc|ENSG00000113407|P26639-2|TARS1 nc|ENSG00000113407|P26639-2|TARS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7218017578125 2 479.290017 956.565481 0.059562 2.8548E-05 0.6435 0.00030843 0.70307 0.00033697 479.2903115058312 53.944 0.80071 50.809 50.38 51.181 -3.1352 40 22 2 0 0 0 0.061087 1 9917 9917 71.922 28.064 1 6901600 47537 2740 31652 31672 46744 46744 0.0854604682289164 TVIAKVNNV 9 Unmodified _TVIAKVNNV_ 0 0 0 nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1 nc|ENSG00000113407|P26639-2|TARS1 nc|ENSG00000113407|P26639-2|TARS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7230529785156 2 479.290017 956.565481 -0.059833 -2.8677E-05 0.62384 0.000299 0.56401 0.00027032 479.29031990613646 53.94 0.59716 50.845 50.51 51.107 -3.0954 36 16 3 0 0 0 0.061087 1 9973 9973 71.922 28.064 1 6538000 47538 2740 31652 31672 46745 46745 0.0854604682289164 TVIAQPQSS 9 Unmodified _TVIAQPQSS_ 0 0 0 REV__nc|ENSG00000076242|P40692-2|MLH1 REV__nc|ENSG00000076242|P40692-2|MLH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25604248046875 2 465.748182 929.481811 0.076387 3.5577E-05 -0.72258 -0.00033654 -0.64619 -0.00030096 465.74807927265545 61.839 0.55806 58.469 58.149 58.707 -3.3694 27 15 3 0 0 0 0.73268 1 11495 11495 18.146 0 1 801050 + 47539 14346 31653 31673 46746 46746 0.014248906551983964 TVIAQPQSS 9 Unmodified _TVIAQPQSS_ 0 0 0 REV__nc|ENSG00000076242|P40692-2|MLH1 REV__nc|ENSG00000076242|P40692-2|MLH1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 465.748182 929.481811 0.19527 9.0946E-05 -0.24885 -0.0001159 -0.053578 -2.4954E-05 465.74806895923643 61.62 0.41703 58.38 58.137 58.554 -3.2395 -0.04444 8.5831E-05 NaN 18.146 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 794310 + 47540 14346 31653 31673 0.014248906551983964 TVIEGRAENY 10 Unmodified _TVIEGRAENY_ 0 0 0 ENST00000489628.1_1_3:195597236-195606066:-|nuORF;ENST00000481865.5_1_3:195596955-195610258:-|nuORF;TNK2|p.Q508Sfs*3|2|0.17|ENSG00000061938|chr3:195870135-195870135|G/-|frameshift_variant;nc|ENSG00000061938|Q07912-2|TNK2;TNK2|p.D495Rfs*25|1|0.24|ENSG00000061938|chr3:195870174-195870175|-/G|frameshift_variant;TNK2|p.Q831Rfs*2|1|0.24|ENSG00000061938|chr3:195867762-195867762|G/-|frameshift_variant;TNK2|p.L888Cfs*83|1|0.6|ENSG00000061938|chr3:195867591-195867591|G/-|frameshift_variant;nc|ENSG00000061938|Q07912|TNK2;nc|ENSG00000061938|Q07912-3|TNK2;ENSG00000061938|ENST00000672887|TNK2 ENST00000489628.1_1_3:195597236-195606066:-|nuORF ENST00000489628.1_1_3:195597236-195606066:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3107299804688 2 576.288202 1150.56185 -0.083378 -4.805E-05 -0.94934 -0.00054709 -1.0327 -0.00059514 576.2875691509897 48.818 1.4645 45.949 45.418 46.882 -2.869 75 41 3 0 0 0 0.664 1 9359 9359 14.838 3.198 1 10699000 47541 1321 31654 31674 46747 46747 -0.007406677416156526 TVIEGRAENY 10 Unmodified _TVIEGRAENY_ 0 0 0 ENST00000489628.1_1_3:195597236-195606066:-|nuORF;ENST00000481865.5_1_3:195596955-195610258:-|nuORF;TNK2|p.Q508Sfs*3|2|0.17|ENSG00000061938|chr3:195870135-195870135|G/-|frameshift_variant;nc|ENSG00000061938|Q07912-2|TNK2;TNK2|p.D495Rfs*25|1|0.24|ENSG00000061938|chr3:195870174-195870175|-/G|frameshift_variant;TNK2|p.Q831Rfs*2|1|0.24|ENSG00000061938|chr3:195867762-195867762|G/-|frameshift_variant;TNK2|p.L888Cfs*83|1|0.6|ENSG00000061938|chr3:195867591-195867591|G/-|frameshift_variant;nc|ENSG00000061938|Q07912|TNK2;nc|ENSG00000061938|Q07912-3|TNK2;ENSG00000061938|ENST00000672887|TNK2 ENST00000489628.1_1_3:195597236-195606066:-|nuORF ENST00000489628.1_1_3:195597236-195606066:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3257446289062 2 576.288202 1150.56185 -0.070143 -4.0423E-05 -0.9579 -0.00055203 -1.028 -0.00059245 576.2876836727982 48.951 1.2199 45.945 45.415 46.635 -3.0068 73 34 3 0 0 0 0.5575 1 9103 9103 21.537 4.5947 1 8176700 47542 1321 31654 31674 46748 46748 -0.007406677416156526 TVIPPPPHSA 10 Unmodified _TVIPPPPHSA_ 0 0 0 ENST00000537604.5_1_11:62469959-62472952:-|nuORF ENST00000537604.5_1_11:62469959-62472952:-|nuORF ENST00000537604.5_1_11:62469959-62472952:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.19146728515625 3 339.190553 1014.54983 NaN NaN NaN NaN NaN NaN NaN 87.029 1 87.029 86.529 87.529 0 0 0 0 0.22588 1 16985 16985 0.62683 0 1 47543 11039 31655 31675 46749 46749 0.043137603058426066 TVKATWSH 8 Unmodified _TVKATWSH_ 0 0 0 ENST00000298119.8_1_14:42077618-42077753:+|nuORF ENST00000298119.8_1_14:42077618-42077753:+|nuORF ENST00000298119.8_1_14:42077618-42077753:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2489013671875 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 83.682 1 80.074 79.574 80.574 -3.6079 0 0 0 0.22699 1 16360 16360 1.7423 0 1 47544 8523 31656 31676 46750 46750 0.009566315832216787 TVKAYRKNV 9 Unmodified _TVKAYRKNV_ 0 0 0 ENST00000506793.5_1_4:44680541-44700695:+|nuORF;GUF1|p.K645Sfs*2|5|0.23|ENSG00000151806|chr4:44698598-44698598|A/-|frameshift_variant;ENSG00000151806|ENST00000281543|GUF1 ENST00000506793.5_1_4:44680541-44700695:+|nuORF ENST00000506793.5_1_4:44680541-44700695:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2167663574219 3 360.217102 1077.62948 NaN NaN NaN NaN NaN NaN NaN 158.53 1 153.25 152.75 153.75 -5.2748 0 0 0 0.23508 1 30767 30767 1.0715 0.61312 1 47545 4890 31657 31677 46751 46751 0.0937682697983746 TVKEDAPVG 9 Unmodified _TVKEDAPVG_ 0 0 0 FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2409973144531 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 92.79 1 92.79 92.29 93.29 0 0 0 0 0.23508 1 18145 18145 12.532 0 1 47546 1659 31658 31678 46752 46752 0.010254882809022092 TVKGKVPLQFS 11 Unmodified _TVKGKVPLQFS_ 0 0 0 nc|ENSG00000038295|O43897-2|TLL1;TLL1|p.F391Lfs*19|1|0.33|ENSG00000038295|chr4:166039350-166039350|T/-|frameshift_variant;ENSG00000038295|ENST00000061240|TLL1 nc|ENSG00000038295|O43897-2|TLL1 nc|ENSG00000038295|O43897-2|TLL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.284912109375 2 602.358431 1202.70231 NaN NaN NaN NaN NaN NaN NaN 115.98 1 115.98 115.48 116.48 0 0 0 0 0.22862 1 22833 22833 9.3831 1.2276 1 47547 1181 31659 31679 46753 46753 0.10906535982599053 TVKHGAPSPS 10 Unmodified _TVKHGAPSPS_ 0 0 0 nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENST00000525980.5_1_9:134025776-134070755:+|nuORF;NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant nc|ENSG00000126883|P35658-2|NUP214 nc|ENSG00000126883|P35658-2|NUP214 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26251220703125 2 490.761623 979.508694 0.096533 4.7375E-05 0.038941 1.9111E-05 0.13547 6.6485E-05 490.76165982371253 15.797 0.69202 15.797 15.365 16.058 0 35 19 4 0 0 0 0.91149 1 2467 2467 7.609 0.88579 1 9719400 47548 3454 31660 31680 46754 46754 0.01811999266374187 TVKHKVKIL 9 Unmodified _TVKHKVKIL_ 0 0 0 PHF3|p.I876Yfs*26|1|0.08|ENSG00000118482|chr6:63694705-63694705|A/-|frameshift_variant;PHF3|p.R971Sfs*6|1|0.27|ENSG00000118482|chr6:63698526-63698527|-/T|frameshift_variant;PHF3|p.N993Tfs*9|1|0.33|ENSG00000118482|chr6:63698597-63698597|A/-|frameshift_variant;PHF3|p.V1137*|1|0.32|ENSG00000118482|chr6:63706063-63706063|A/-|frameshift_variant;PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant;PHF3|p.F1399Lfs*30|1|0.31|ENSG00000118482|chr6:63711780-63711780|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*10|2|0.05|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3 PHF3|p.I876Yfs*26|1|0.08|ENSG00000118482|chr6:63694705-63694705|A/-|frameshift_variant PHF3|p.I876Yfs*26|1|0.08|ENSG00000118482|chr6:63694705-63694705|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2841796875 2 533.360776 1064.707 NaN NaN NaN NaN NaN NaN NaN 159.98 1 155.19 154.69 155.69 -4.7952 0 0 0 0.23508 1 31811 31811 1.6526 0 1 47549 3037 31661 31681 46755 46755 0.17723464916048215 TVKKKDKGKS 10 Unmodified _TVKKKDKGKS_ 0 0 0 nc|ENSG00000216937|Q96M83-5|CCDC7;nc|ENSG00000216937|Q96M83-4|CCDC7;nc|ENSG00000216937|Q96M83-3|CCDC7;ENSG00000216937|ENST00000639629|CCDC7 nc|ENSG00000216937|Q96M83-5|CCDC7 nc|ENSG00000216937|Q96M83-5|CCDC7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 559.8037109375 2 559.84823 1117.68191 NaN NaN NaN NaN NaN NaN NaN 168.9 1 163.97 163.47 164.47 -4.9295 0 0 0 2.8426 1 33318 33318 0.013265 0 1 47550 12598 31662 31682 46756 46756 0.1277736532281324 TVKKRKTRK 9 Unmodified _TVKKRKTRK_ 0 0 0 REV__ENST00000536038.5_1_17:79870294-79871084:-|nuORF REV__ENST00000536038.5_1_17:79870294-79871084:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 572.3992919921875 2 572.885481 1143.75641 0.2925 0.00016757 3.0595 0.0017528 3.352 0.0019203 573.389043979111 162.85 0.10553 162.85 162.76 162.86 0 4 2 2 0 0 0 0.88312 1 32778 32778 1.8442 0.19162 1 14759000 + 47551 19092 31663 31683 46757 46757 0.19028172924822684 TVKNGHAVPG 10 Unmodified _TVKNGHAVPG_ 0 0 0 nc|ENSG00000186638|Q5T7B8-4|KIF24;nc|ENSG00000186638|Q5T7B8-2|KIF24;ENSG00000186638|ENST00000402558|KIF24 nc|ENSG00000186638|Q5T7B8-4|KIF24 nc|ENSG00000186638|Q5T7B8-4|KIF24 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26812744140625 2 490.269616 978.524678 NaN NaN NaN NaN NaN NaN NaN 135.62 1 130.79 130.29 131.29 -4.8307 0 0 0 2.8426 1 26113 26113 8.7518 0 1 47552 7071 31664 31684 46758 46758 0.03455705503279205 TVKPDLVGKL 10 Unmodified _TVKPDLVGKL_ 0 0 0 ENSG00000110042|ENST00000227451|DTX4;nc|ENSG00000110042|Q9Y2E6-2|DTX4 ENSG00000110042|ENST00000227451|DTX4 ENSG00000110042|ENST00000227451|DTX4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5596008300781 3 357.225375 1068.6543 0.020665 7.3821E-06 -0.18643 -6.6597E-05 -0.16576 -5.9215E-05 357.2252531134962 24.508 0.27488 22.974 22.785 23.06 -1.5342 12 7 2 0 0 0 0.75212 1 3993 3993 5.0475 0 1 420240 47553 2555 31665 31685 46759 46759 0.12271462062540195 TVKPSIEPR 9 Unmodified _TVKPSIEPR_ 0 0 0 REV__NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant REV__NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.22222900390625 3 342.869591 1025.58694 0.27748 9.5141E-05 -0.64558 -0.00022135 -0.3681 -0.00012621 342.86933660022885 86.588 0.66302 82.637 82.332 82.995 -3.9503 24 18 2 0 0 0 0.88054 1 16535 16535 0.86438 0 1 985800 + 47554 24394 31666 31686 46760 46760 0.07517431851601941 TVKPSIEPR 9 Unmodified _TVKPSIEPR_ 0 0 0 REV__NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant REV__NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 342.869591 1025.58694 -0.33226 -0.00011392 -0.010899 -3.737E-06 -0.34316 -0.00011766 342.8695540215781 86.306 0.43275 82.579 82.404 82.837 -3.727 -0.085176 0.00017858 NaN 0.86438 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1362600 + 47555 24394 31666 31686 0.07517431851601941 TVKPSIEPR 9 Unmodified _TVKPSIEPR_ 0 0 0 REV__NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant REV__NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 342.869591 1025.58694 -0.59846 -0.00020519 0.0048485 1.6624E-06 -0.59361 -0.00020353 342.8695332465147 86.505 0.59985 82.776 82.413 83.012 -3.7289 0.11172 0.00019478 NaN 0.86438 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1045800 + 47556 24394 31666 31686 0.07517431851601941 TVKRIWSVY 9 Unmodified _TVKRIWSVY_ 0 0 0 REV__ENSG00000197540|ENST00000264553|GZMM REV__ENSG00000197540|ENST00000264553|GZMM MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3325805664062 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 136.51 1 136.51 136.01 137.01 0 0 0 0 0.19656 1 27054 27054 0.073264 0 1 + 47557 19345 31667 31687 46761 46761 0.08057997639662062 TVKRKEVRY 9 Unmodified _TVKRKEVRY_ 0 0 0 REV__nc|ENSG00000142611|Q9HAZ2-3|PRDM16 REV__nc|ENSG00000142611|Q9HAZ2-3|PRDM16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.270263671875 2 589.853847 1177.69314 0.49537 0.00029219 -3.4821 -0.0020539 -2.9867 -0.0017617 590.352434189597 141.6 0.20949 136.95 136.89 137.1 -4.6493 6 5 2 0 0 0 0.87258 1 27998 27998 4.3292 2.6766 1 1951600 + 47558 24078 31668 31688 46762 46762 0.11140187416958724 TVKSQPNVTL 10 Unmodified _TVKSQPNVTL_ 0 0 0 REV__nc|ENSG00000055957|P19827-2|ITIH1 REV__nc|ENSG00000055957|P19827-2|ITIH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7720336914062 2 543.811313 1085.60807 0.25489 0.00013861 -0.0098281 -5.3446E-06 0.24506 0.00013327 543.8112684268742 129.87 0.78322 125.1 124.71 125.5 -4.7725 52 21 3 0 0 0 0.071277 1 24971 24971 75.761 0 1 8025900 + 47559 14120 31669 31689 46763 46763 0.06869397160471635 TVKTKSSV 8 Unmodified _TVKTKSSV_ 0 0 0 ENSG00000250254|ENST00000504686|PTTG2;nc|ENSG00000250254|Q9NZH5|PTTG2 ENSG00000250254|ENST00000504686|PTTG2 ENSG00000250254|ENST00000504686|PTTG2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25518798828125 2 425.255643 848.496732 NaN NaN NaN NaN NaN NaN NaN 133.59 1 128.95 128.45 129.45 -4.6399 0 0 0 0.2074 1 26340 26340 19.439 1.304 1 47560 7902 31670 31690 46764 46764 0.06642382523182278 TVKVCGSKSSV 11 Unmodified _TVKVCGSKSSV_ 0 0 0 nc|ENSG00000182973|Q9H9A5-6|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 nc|ENSG00000182973|Q9H9A5-6|CNOT10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7802734375 2 547.797349 1093.58014 0.059177 3.2417E-05 -2.7376 -0.0014997 -2.6784 -0.0014672 547.7961005268476 131.3 0.44585 126.47 126.1 126.55 -4.8355 13 12 2 0 0 0 0.50395 1 25197 25197 12.175 0 1 1430800 47561 12503 31671 31691 46765 46765 0.0370975090875163 TVKVLDRPGP 10 Unmodified _TVKVLDRPGP_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2840576171875 2 541.321848 1080.62914 NaN NaN NaN NaN NaN NaN NaN 91.359 1 87.264 86.764 87.764 -4.0946 0 0 0 0.22588 1 17410 17410 6.2058 0.44535 1 47562 5053 31672 31692 46766 46766 0.09205407259992171 TVKWQRSAF 9 Unmodified _TVKWQRSAF_ 0 0 0 REV__nc|ENSG00000197345|Q7Z2W9-2|MRPL21 REV__nc|ENSG00000197345|Q7Z2W9-2|MRPL21 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.207275390625 3 374.873336 1121.59818 0.0805 3.0177E-05 -0.32713 -0.00012263 -0.24663 -9.2455E-05 375.2075313083495 106.02 0.65379 106.02 105.67 106.33 0 26 18 2 0 0 0 0.6797 1 20859 20859 7.609 0 1 1474100 + 47563 19327 31673 31693 46767 46767 0.04224253945744749 TVKYTCIT 8 Unmodified _TVKYTCIT_ 0 0 0 REV__ENST00000525056.1_1_11:108203545-108206748:+|nuORF REV__ENST00000525056.1_1_11:108203545-108206748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700439453125 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 178.91 1 178.91 178.41 179.41 0 0 0 0 0.21486 1 37058 37058 0 0 1 + 47564 22679 31674 31694 46768 46768 0.006916204141816706 TVKYTCIT 8 Unmodified _TVKYTCIT_ 0 0 0 REV__ENST00000525056.1_1_11:108203545-108206748:+|nuORF REV__ENST00000525056.1_1_11:108203545-108206748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1646728515625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 179.6 1 179.6 179.1 180.1 0 0 0 0 0.21486 1 37206 37206 0 0 1 + 47565 22679 31674 31694 46769 46769 0.006916204141816706 TVKYTCIT 8 Unmodified _TVKYTCIT_ 0 0 0 REV__ENST00000525056.1_1_11:108203545-108206748:+|nuORF REV__ENST00000525056.1_1_11:108203545-108206748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1646423339844 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 179.87 1 179.87 179.37 180.37 0 0 0 0 0.21486 1 37262 37262 0 0 1 + 47566 22679 31674 31694 46770 46770 0.006916204141816706 TVKYTCIT 8 Unmodified _TVKYTCIT_ 0 0 0 REV__ENST00000525056.1_1_11:108203545-108206748:+|nuORF REV__ENST00000525056.1_1_11:108203545-108206748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650085449219 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 160.04 1 154.81 154.31 155.31 -5.2299 0 0 0 0.21486 1 31066 31066 0 0 1 + 47567 22679 31674 31694 46771 46771 0.006916204141816706 TVLELLDKY 9 Unmodified _TVLELLDKY_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7888793945312 2 547.310615 1092.60668 0.060014 3.2846E-05 -0.44898 -0.00024573 -0.38897 -0.00021289 547.3102436128393 131.44 0.82231 126.58 126.39 127.21 -4.8527 32 23 2 0 0 0 0.42844 1 25293 25293 24.021 5.8742 1 1250800 47568 3843 31675 31695 46772 46772 0.0640776307170654 TVLGQLNE 8 Unmodified _TVLGQLNE_ 0 0 0 REV__nc|ENSG00000154188|Q15389-2|ANGPT1 REV__nc|ENSG00000154188|Q15389-2|ANGPT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2354431152344 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.762 1 60.346 59.846 60.846 -3.4158 0 0 0 0.20462 1 11918 11918 21.747 0 1 + 47569 17172 31676 31696 46773 46773 0.019015056264720442 TVLGSVTVAI 10 Unmodified _TVLGSVTVAI_ 0 0 0 REV__MED16|p.V318*|1|0.26|ENSG00000175221|chr19:884936-884936|C/-|frameshift_variant REV__MED16|p.V318*|1|0.26|ENSG00000175221|chr19:884936-884936|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7767028808594 2 480.292225 958.569897 0.060849 2.9225E-05 -0.021879 -1.0508E-05 0.03897 1.8717E-05 480.29218411659514 139.21 1.3347 134.57 134.01 135.35 -4.6439 130 37 5 0 0 0 0.042378 1 27456 27456 30.239 12.231 1 222490000 + 47570 18463 31677 31697 46774 46774 0.08895511245816579 TVLHAWRLRQY 11 Unmodified _TVLHAWRLRQY_ 0 0 0 REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2548828125 3 481.60536 1441.79425 NaN NaN NaN NaN NaN NaN NaN 119.42 1 114.77 114.27 115.27 -4.645 0 0 0 0.23689 1 22919 22919 2.8433 0.75728 1 + 47571 20125 31678 31698 46775 46775 0.09102639119646483 TVLHRDLKPT 10 Unmodified _TVLHRDLKPT_ 0 0 0 NEK2|p.A145T|1|0.12|ENSG00000117650|chr1:211673605-211673605|C/T|missense_variant NEK2|p.A145T|1|0.12|ENSG00000117650|chr1:211673605-211673605|C/T|missense_variant NEK2|p.A145T|1|0.12|ENSG00000117650|chr1:211673605-211673605|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.267578125 2 590.345855 1178.67716 0.35447 0.00020926 4.053 0.0023926 4.4074 0.0026019 590.3488810006593 156.91 0.16861 156.91 156.79 156.96 0 6 4 2 0 0 0 0.72406 1 31489 31489 8.7454 0.58988 1 2513800 47572 12682 31679 31699 46776 46776 0.09496481180030969 TVLIIKSLR 9 Unmodified _TVLIIKSLR_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279541015625 2 521.852784 1041.69102 0.20648 0.00010775 1.3548 0.00070702 1.5613 0.00081478 521.8536054711407 138.4 0.13428 138.4 138.28 138.42 0 6 3 2 0 0 0 0.87741 1 27480 27480 1.3295 0 1 3102100 47573 7807 31680 31700 46777 46777 0.17183758679129824 TVLIRHKII 9 Unmodified _TVLIRHKII_ 0 0 0 nc|ENSG00000158691|O43309-2|ZSCAN12;ENSG00000158691|ENST00000684592|ZSCAN12 nc|ENSG00000158691|O43309-2|ZSCAN12 nc|ENSG00000158691|O43309-2|ZSCAN12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 364.8500671386719 3 364.913243 1091.7179 0.13747 5.0164E-05 -0.58819 -0.00021464 -0.45072 -0.00016447 364.91296085447925 26.227 0.5172 24.593 24.374 24.891 -1.6347 37 14 4 0 0 0 0.65126 1 4312 4312 0.0033805 0 1 2724600 47574 5178 31681 31701 46778 46778 0.17570867290305614 TVLIRHKII 9 Unmodified _TVLIRHKII_ 0 0 0 nc|ENSG00000158691|O43309-2|ZSCAN12;ENSG00000158691|ENST00000684592|ZSCAN12 nc|ENSG00000158691|O43309-2|ZSCAN12 nc|ENSG00000158691|O43309-2|ZSCAN12 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 364.913243 1091.7179 -0.17434 -6.3618E-05 -0.31936 -0.00011654 -0.4937 -0.00018016 364.9130759868559 24.657 0.4401 24.657 24.406 24.846 0 0.032212 0.00016503 NaN 0.0033805 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2942300 47575 5178 31681 31701 0.17570867290305614 TVLKAFFRL 9 Unmodified _TVLKAFFRL_ 0 0 0 REV__ENSG00000183690|ENST00000420999|EFHC2 REV__ENSG00000183690|ENST00000420999|EFHC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.775634765625 2 547.839677 1093.6648 NaN NaN NaN NaN NaN NaN NaN 141.96 1 136.97 136.47 137.47 -4.9877 0 0 0 0.19632 1 27346 27346 0.073264 0.029476 1 + 47576 18851 31682 31702 46779 46779 0.12171489507659317 TVLLGSSAVI 10 Unmodified _TVLLGSSAVI_ 0 0 0 ENST00000397559.3_1_5:32100984-32108238:+|nuORF;ENST00000513490.1_1_5:32100951-32108238:+|nuORF;ENST00000515115.5_1_5:32098703-32108238:+|nuORF ENST00000397559.3_1_5:32100984-32108238:+|nuORF ENST00000397559.3_1_5:32100984-32108238:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7755432128906 2 480.292225 958.569897 0.21352 0.00010255 -0.15568 -7.4774E-05 0.057836 2.7778E-05 480.2921025244615 139.56 1.5403 134.71 134.18 135.72 -4.8492 135 43 5 0 0 0 0.0044467 1 26927 26927 45.355 15.116 1 156150000 47577 9467 31683 31703 46780 46780 0.08895511245816579 TVLLQEVAAT 10 Unmodified _TVLLQEVAAT_ 0 0 0 PLCG1|p.L37Vfs*37|1|0.22|ENSG00000124181|chr20:41137749-41137750|TT/-|frameshift_variant PLCG1|p.L37Vfs*37|1|0.22|ENSG00000124181|chr20:41137749-41137750|TT/-|frameshift_variant PLCG1|p.L37Vfs*37|1|0.22|ENSG00000124181|chr20:41137749-41137750|TT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.281494140625 2 522.800414 1043.58628 0.76353 0.00039917 -0.84354 -0.000441 -0.080014 -4.1831E-05 522.7999686472573 104.28 0.81735 100.23 99.839 100.66 -4.0543 51 22 3 0 0 0 0.82238 1 20110 20110 8.1555 0 1 4280100 47578 12799 31684 31704 46781 46781 0.06622592411895312 TVLMGTRKG 9 Unmodified _TVLMGTRKG_ 0 0 0 REV__ENST00000475124.1_1_3:53892285-53892672:+|nuORF REV__ENST00000475124.1_1_3:53892285-53892672:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7750244140625 2 481.776219 961.537886 NaN NaN NaN NaN NaN NaN NaN 152.57 1 147.82 147.32 148.32 -4.7523 0 0 0 0.19162 1 30316 30316 0.40827 0 1 + 47579 22091 31685 31705 46782 46782 0.05557820291016924 TVLPQARR 8 Unmodified _TVLPQARR_ 0 0 0 REV__nc|ENSG00000115419|O94925-2|GLS REV__nc|ENSG00000115419|O94925-2|GLS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.19573974609375 3 314.194409 939.561398 NaN NaN NaN NaN NaN NaN NaN 173.87 1 168.98 168.48 169.48 -4.8916 0 0 0 0.21486 1 34586 34586 3.5965 0 1 + 47580 15429 31686 31706 46783 46783 0.08920002119850778 TVLSESSTTVA 11 Unmodified _TVLSESSTTVA_ 0 0 0 ENSG00000168005|ENST00000294244|SPINDOC ENSG00000168005|ENST00000294244|SPINDOC ENSG00000168005|ENST00000294244|SPINDOC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.783447265625 2 547.782418 1093.55028 0.51271 0.00028085 1.4353 0.00078624 1.948 0.0010671 547.7827703957947 32.761 0.49206 30.613 30.35 30.842 -2.1483 25 13 3 0 0 0 0.74417 1 5670 5670 8.7454 0 1 856810 47581 5867 31687 31707 46784 46784 0.007250904443935724 TVLSGAGRFED 11 Unmodified _TVLSGAGRFED_ 0 0 0 ENST00000549905.5_1_12:74686278-74686398:-|nuORF ENST00000549905.5_1_12:74686278-74686398:-|nuORF ENST00000549905.5_1_12:74686278-74686398:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.334716796875 2 576.288202 1150.56185 0.13058 7.5252E-05 -1.0766 -0.00062045 -0.94605 -0.0005452 576.2874971069701 49.021 1.33 46.022 45.468 46.798 -2.999 70 37 3 0 0 0 0.70375 1 9020 9020 11.495 0.67078 1 8820100 47582 11169 31688 31708 46785 46785 -0.007406677416156526 TVLSGAGRFED 11 Unmodified _TVLSGAGRFED_ 0 0 0 ENST00000549905.5_1_12:74686278-74686398:-|nuORF ENST00000549905.5_1_12:74686278-74686398:-|nuORF ENST00000549905.5_1_12:74686278-74686398:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3189697265625 2 576.288202 1150.56185 -0.070143 -4.0423E-05 -0.9579 -0.00055203 -1.028 -0.00059245 576.2876836727982 48.951 1.2199 45.945 45.415 46.635 -3.0068 73 34 3 0 0 0 0.45265 2 9080 9039;9080 15.248 0.41021 1 8176700 47583 11169 31688 31708 46786;46787 46787 -0.007406677416156526 TVMDEIHTV 9 Unmodified _TVMDEIHTV_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2771606445312 2 522.755149 1043.49575 0.045573 2.3823E-05 -0.36865 -0.00019271 -0.32308 -0.00016889 522.75505193087 95.411 0.72758 95.411 95.109 95.836 0 47 20 3 0 0 0 0.028313 1 18702 18702 96.285 46.352 1 12189000 47584 1307 31689 31709 46788 46788 -0.024261999080408714 TVMDEIHTV 9 Unmodified _TVMDEIHTV_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2781372070312 2 522.755149 1043.49575 -0.17579 -9.1895E-05 -0.093424 -4.8838E-05 -0.26921 -0.00014073 522.755142146011 99.426 0.76089 95.294 94.925 95.685 -4.1326 58 21 3 0 0 0 0.028313 1 19532 19532 96.285 46.352 1 18052000 47585 1307 31689 31709 46789 46789 -0.024261999080408714 TVMDEIHTV 9 Unmodified _TVMDEIHTV_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.701416015625 2 522.755149 1043.49575 -0.4027 -0.00021052 0.2091 0.00010931 -0.1936 -0.00010121 522.7552889695123 99.645 0.73984 95.361 94.985 95.724 -4.2839 59 21 4 0 0 0 0.31714 1 19006 19006 30.637 2.1497 1 15601000 47586 1307 31689 31709 46790 46790 -0.024261999080408714 TVMDEIHTV 9 Unmodified _TVMDEIHTV_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2777709960938 2 522.755149 1043.49575 0.25962 0.00013572 -0.429 -0.00022426 -0.16938 -8.8544E-05 522.7549564866958 99.351 0.82854 95.394 95.003 95.832 -3.9564 70 23 4 0 0 0 0.017753 1 19052 19052 96.285 54.445 1 13901000 47587 1307 31689 31709 46791 46791 -0.024261999080408714 TVMKVKQILG 10 Unmodified _TVMKVKQILG_ 0 0 0 ENST00000493178.1_1_10:14880401-14883177:+|nuORF;HSPA14|p.N95Mfs*8|2|0.47|ENSG00000187522|chr10:14848797-14848797|A/-|frameshift_variant;ENSG00000187522|ENST00000378372|HSPA14 ENST00000493178.1_1_10:14880401-14883177:+|nuORF ENST00000493178.1_1_10:14880401-14883177:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 558.9878540039062 2 558.844102 1115.67365 NaN NaN NaN NaN NaN NaN NaN 171.22 1 166.43 165.93 166.93 -4.7898 0 0 0 2.8426 1 34799 34799 0.063865 0 1 47588 7109 31690 31710 46792 46792 0.1204409508181925 TVMPHATIS 9 Unmodified _TVMPHATIS_ 0 0 0 REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7378845214844 2 478.747127 955.479702 0.34537 0.00016534 0.39531 0.00018925 0.74067 0.00035459 478.74714858301564 70.814 0.38959 67.347 67.096 67.486 -3.467 13 10 2 0 0 0 0.65155 1 13402 13402 10.824 0 1 685340 + 47589 14319 31691 31711 46793 46793 0.0001813864572568491 TVNATITPV 9 Unmodified _TVNATITPV_ 0 0 0 REV__ENSG00000169925|ENST00000303407|BRD3 REV__ENSG00000169925|ENST00000303407|BRD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2240295410156 2 458.260925 914.507297 0.12235 5.607E-05 -0.044559 -2.042E-05 0.077794 3.565E-05 458.2608333299838 84.514 0.80345 80.605 80.178 80.981 -3.9093 35 22 2 0 0 0 0.27986 1 15989 15989 32.786 3.7041 1 1510100 + 47590 18129 31692 31712 46794 46794 0.04662365177625816 TVNIIGQSHL 10 Unmodified _TVNIIGQSHL_ 0 0 0 nc|ENSG00000168310|P14316-2|IRF2 nc|ENSG00000168310|P14316-2|IRF2 nc|ENSG00000168310|P14316-2|IRF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.1895751953125 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 162.88 1 157.73 157.23 158.23 -5.1438 0 0 0 0.22588 1 31663 31663 8.7454 0 1 47591 12449 31693 31713 46795 46795 0.05568530363279933 TVNKLKRLIRK 11 Unmodified _TVNKLKRLIRK_ 0 0 0 REV__ENST00000443509.6_1_9:79322772-79322814:-|nuORF REV__ENST00000443509.6_1_9:79322772-79322814:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 684.9222412109375 2 684.96172 1367.90889 NaN NaN NaN NaN NaN NaN NaN 174.96 1 174.96 174.46 175.46 0 0 0 0 0.22632 1 36243 36243 0.0059557 0 1 + 47592 21731 31694 31714 46796 46796 0.2396494860158782 TVNKVSTPDRK 11 Unmodified _TVNKVSTPDRK_ 0 0 0 REV__ENST00000425869.1_22:16650633-16650708:+|nuORF REV__ENST00000425869.1_22:16650633-16650708:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7572021484375 2 622.851501 1243.68845 0.39713 0.00024735 -2.0934 -0.0013039 -1.6963 -0.0010565 623.3530776145108 128.11 0.21398 128.11 127.96 128.18 0 6 5 2 0 0 0 0.93119 1 25306 25306 6.1918 2.9105 1 2947000 + 47593 21560 31695 31715 46797 46797 0.0763525848349218 TVNMEGRGAF 10 Unmodified _TVNMEGRGAF_ 0 0 0 REV__ENSG00000068654|ENST00000263857|POLR1A REV__ENSG00000068654|ENST00000263857|POLR1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2598266601562 2 541.258391 1080.50223 NaN NaN NaN NaN NaN NaN NaN 130.28 1 125.64 125.14 126.14 -4.6359 0 0 0 0.22588 1 25676 25676 10.074 0.6908 1 + 47594 14230 31696 31716 46798 46798 -0.034802619566335125 TVNPMEVG 8 Unmodified _TVNPMEVG_ 0 0 0 ENST00000477264.1_1_1:9790568-9793533:-|nuORF ENST00000477264.1_1_1:9790568-9793533:-|nuORF ENST00000477264.1_1_1:9790568-9793533:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 423.70379638671875 2 423.704928 845.395304 NaN NaN NaN NaN NaN NaN NaN 143.68 1 138.78 138.28 139.28 -4.8982 0 0 0 0.22676 1 27735 27735 0.62683 0 1 47595 10302 31697 31717 46799 46799 -0.03357812171020669 TVNQAREEP 9 Unmodified _TVNQAREEP_ 0 0 0 REV__ENSG00000198947|ENST00000357033|DMD;REV__nc|ENSG00000198947|P11532-16|DMD REV__ENSG00000198947|ENST00000357033|DMD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2616577148438 2 522.259445 1042.50434 NaN NaN NaN NaN NaN NaN NaN 174.13 1 169.24 168.74 169.74 -4.8916 0 0 0 0.19721 1 34651 34651 24.021 4.6586 1 + 47596 13700;24235 31698 31718 46800 46800 -0.015215099472015936 TVNSVILLP 9 Unmodified _TVNSVILLP_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1;ENST00000379752.5_1_1:157029186-157029948:-|nuORF;nc|ENSG00000122692|Q2TAY7-2|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7339782714844 2 478.294768 954.574983 NaN NaN NaN NaN NaN NaN NaN 107.43 1 103.29 102.79 103.79 -4.135 0 0 0 0.22962 1 20662 20662 14.838 1.7958 1 47597 3239 31699 31719 46801 46801 0.09587815108432096 TVNTFDEKSY 10 Unmodified _TVNTFDEKSY_ 0 0 0 ENST00000563645.1_1_16:19514794-19516450:-|nuORF;ENSG00000006007|ENST00000353258|GDE1 ENST00000563645.1_1_16:19514794-19516450:-|nuORF ENST00000563645.1_1_16:19514794-19516450:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2783203125 2 602.280043 1202.54553 NaN NaN NaN NaN NaN NaN NaN 43.386 1 40.62 40.12 41.12 -2.7661 0 0 0 0.22588 1 7833 7833 10.824 2.6684 1 47598 1002 31700 31720 46802 46802 -0.047637936983846885 TVNVSEYT 8 Unmodified _TVNVSEYT_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;REV__SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2242126464844 2 456.71909 911.423627 -0.10878 -4.9682E-05 0.40827 0.00018646 0.29949 0.00013678 456.7191711577375 82.768 2.2728 79.16 78.05 80.323 -3.6079 159 64 4 0 0 0 0.62642 1 16216 16216 20.454 1.0146 1 11181000 + 47599 14106;24761;24760 31701 31721 46803 46803 -0.03562790990099529 TVNVSEYT 8 Unmodified _TVNVSEYT_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;REV__SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 456.71909 911.423627 -0.11719 -5.3525E-05 0.40524 0.00018508 0.28804 0.00013155 456.7192252310878 82.9 2.252 79.202 78.177 80.429 -3.6985 -0.099957 5.7075E-05 NaN 20.454 160 64 3 NaN NaN NaN NaN 0 NaN NaN 0 9257600 + 47600 14106;24761;24760 31701 31721 -0.03562790990099529 TVPALYPAFS 10 Unmodified _TVPALYPAFS_ 0 0 0 REV__nc|ENSG00000139793|Q5VZF2-3|MBNL2 REV__nc|ENSG00000139793|Q5VZF2-3|MBNL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.270751953125 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 139.15 1 134.51 134.01 135.01 -4.6439 0 0 0 0.22583 1 27470 27470 13.906 0 1 + 47601 16543 31702 31722 46804 46804 0.024552247287601858 TVPARSGW 8 Unmodified _TVPARSGW_ 0 0 0 REV__ENST00000188376.9_2_12:98987634-98987730:+|nuORF REV__ENST00000188376.9_2_12:98987634-98987730:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2313537597656 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 146.81 1 142.12 141.62 142.62 -4.6868 0 0 0 0.2074 1 29121 29121 19.439 0 1 + 47602 19989 31703 31723 46805 46805 0.009123624117705731 TVPDSSGG 8 Unmodified _TVPDSSGG_ 0 0 0 ENSG00000179168|ENST00000334928|GGN;GGN|p.A569Pfs*47|1|0.5|ENSG00000179168|chr19:38385557-38385557|C/-|frameshift_variant ENSG00000179168|ENST00000334928|GGN ENSG00000179168|ENST00000334928|GGN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015380859375 2 360.163951 718.313348 NaN NaN NaN NaN NaN NaN NaN 131.88 1 127.08 126.58 127.58 -4.799 0 0 0 0.21486 1 25388 25388 2.5775 0 1 47603 6618 31704 31724 46806 46806 -0.057075912584537036 TVPFMVPFTL 10 Unmodified _TVPFMVPFTL_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3365478515625 2 576.312103 1150.60965 NaN NaN NaN NaN NaN NaN NaN 107.47 1 103.05 102.55 103.55 -4.4121 0 0 0 0.22576 1 20619 20619 14.838 0.93222 1 47604 6711 31705 31725 46807 46807 0.04037314924880775 TVPGAELFFK 10 Unmodified _TVPGAELFFK_ 0 0 0 REV__WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant REV__WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 554.8049926757812 2 554.8055 1107.59645 NaN NaN NaN NaN NaN NaN NaN 169.47 1 169.47 168.97 169.97 0 0 0 0 0.22518 1 34790 34790 22.736 8.8302 1 + 47605 17846 31706 31726 46808 46808 0.04695200137120992 TVPHIWTVAA 10 Unmodified _TVPHIWTVAA_ 0 0 0 REV__MAP4K2|p.G667Lfs*24|1|0.38|ENSG00000168067|chr11:64792003-64792004|-/AC|frameshift_variant REV__MAP4K2|p.G667Lfs*24|1|0.38|ENSG00000168067|chr11:64792003-64792004|-/AC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.78125 2 547.803291 1093.59203 NaN NaN NaN NaN NaN NaN NaN 162.38 1 157.23 156.73 157.73 -5.1438 0 0 0 0.22588 1 31546 31546 10.074 0 1 + 47606 17995 31707 31727 46809 46809 0.04897735714234841 TVPHTDGYGV 10 Unmodified _TVPHTDGYGV_ 0 0 0 REV__ENSG00000170745|ENST00000304101|KCNS3 REV__ENSG00000170745|ENST00000304101|KCNS3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6846313476562 2 523.251089 1044.48762 -0.46411 -0.00024285 -4.025 -0.0021061 -4.4892 -0.002349 523.7504464385175 148.51 0.31673 143.35 143.22 143.54 -5.1557 11 8 2 0 0 0 0.871 1 28731 28731 10.074 1.3285 1 3288400 + 47607 18177 31708 31728 46810 46810 -0.032840108331583906 TVPHTLLQKD 10 Unmodified _TVPHTLLQKD_ 0 0 0 ENSG00000158321|ENST00000342771|AUTS2;AUTS2|p.H1148Tfs*70|1|0.36|ENSG00000158321|chr7:70790657-70790657|C/-|frameshift_variant;ENST00000481994.1_1_7:70229918-70239316:+|nuORF ENSG00000158321|ENST00000342771|AUTS2 ENSG00000158321|ENST00000342771|AUTS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.330322265625 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 146.92 1 142.24 141.74 142.74 -4.6868 0 0 0 0.22559 1 29145 29145 17.113 6.289 1 47608 282 31709 31729 46811 46811 0.06533086051786086 TVPNSLAQWND 11 Unmodified _TVPNSLAQWND_ 0 0 0 CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;CSMD3|p.G3063Rfs*5|1|0.06|ENSG00000164796|chr8:112287208-112287209|-/G|frameshift_variant;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;CSMD3|p.A3641Cfs*13|1|0.36|ENSG00000164796|chr8:112228799-112228800|-/A|frameshift_variant;nc|ENSG00000164796|Q7Z407-2|CSMD3;CSMD3|p.F3640Lfs*61|7|0.35|ENSG00000164796|chr8:112228800-112228800|A/-|frameshift_variant;ENSG00000164796|ENST00000297405|CSMD3;CSMD3|p.L2190Yfs*46|1|0.29|ENSG00000164796|chr8:112341560-112341560|A/-|frameshift_variant CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7698974609375 2 622.798934 1243.58332 NaN NaN NaN NaN NaN NaN NaN 169.2 1 169.2 168.7 169.7 0 0 0 0 0.22595 1 34719 34719 11.495 0 1 47609 729 31710 31730 46812 46812 -0.02873282712926084 TVPPAPPAA 9 Unmodified _TVPPAPPAA_ 0 0 0 REV__ENST00000535376.5_1_12:1023254-1025717:-|nuORF REV__ENST00000535376.5_1_12:1023254-1025717:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.2332458496094 2 410.731803 819.449054 -0.067847 -2.7867E-05 0.25177 0.00010341 0.18392 7.5543E-05 410.73185238377494 43.229 1.657 40.463 39.629 41.286 -2.7661 72 46 2 0 0 0 0.32442 1 7771 7771 4.7159 0 1 1654700 + 47610 13822 31711 31731 46813 46813 0.032107283229947825 TVPPAPPAA 9 Unmodified _TVPPAPPAA_ 0 0 0 REV__ENST00000535376.5_1_12:1023254-1025717:-|nuORF REV__ENST00000535376.5_1_12:1023254-1025717:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 410.731803 819.449054 -0.25553 -0.00010495 0.47179 0.00019378 0.21626 8.8826E-05 410.7319120868733 43.422 0.76647 40.703 40.558 41.325 -2.7191 0.13055 -2.6357E-05 NaN 4.7159 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1592600 + 47611 13822 31711 31731 0.032107283229947825 TVPPAPPAA 9 Unmodified _TVPPAPPAA_ 0 0 0 REV__ENST00000535376.5_1_12:1023254-1025717:-|nuORF REV__ENST00000535376.5_1_12:1023254-1025717:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 410.731803 819.449054 -0.067847 -2.7867E-05 0.25177 0.00010341 0.18392 7.5543E-05 410.73185238377494 43.229 1.657 40.463 39.629 41.286 -2.7661 -0.10938 -0.00020709 NaN 4.7159 72 46 2 NaN NaN NaN NaN 0 NaN NaN 0 1654700 + 47612 13822 31711 31731 0.032107283229947825 TVPPAPPAA 9 Unmodified _TVPPAPPAA_ 0 0 0 REV__ENST00000535376.5_1_12:1023254-1025717:-|nuORF REV__ENST00000535376.5_1_12:1023254-1025717:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 410.731803 819.449054 -0.45429 -0.00018659 0.76346 0.00031358 0.30917 0.00012699 410.73205208692764 43.158 1.7829 40.552 39.65 41.433 -2.606 -0.02117 0.00021324 NaN 4.7159 68 50 2 NaN NaN NaN NaN 0 NaN NaN 0 1295900 + 47613 13822 31711 31731 0.032107283229947825 TVPPMLLEL 9 Unmodified _TVPPMLLEL_ 0 0 0 REV__ENST00000524160.5_1_15:55703318-55731746:-|nuORF REV__ENST00000524160.5_1_15:55703318-55731746:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.1796875 3 338.196428 1011.56745 NaN NaN NaN NaN NaN NaN NaN 67.566 1 64.458 63.958 64.958 -3.1086 0 0 0 0.23508 1 13105 13105 1.0715 0 1 + 47614 19860 31712 31732 46814 46814 0.06213339516477845 TVPQVQREE 9 Unmodified _TVPQVQREE_ 0 0 0 ENSG00000253797|ENST00000521776|UTP14C ENSG00000253797|ENST00000521776|UTP14C ENSG00000253797|ENST00000521776|UTP14C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7939453125 2 543.28292 1084.55129 0.39376 0.00021392 1.8723 0.0010172 2.2661 0.0012311 543.7867608245411 159.06 0.10425 154.27 154.19 154.3 -4.7952 4 2 2 0 0 0 0.39189 1 31620 31620 26.268 6.9062 1 824000 47615 7918 31713 31733 46815 46815 0.012393496039521779 TVPTSTLKG 9 Unmodified _TVPTSTLKG_ 0 0 0 REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76513671875 2 452.260925 902.507297 0.074574 3.3727E-05 0.25014 0.00011313 0.32472 0.00014686 452.26098614165585 75.643 0.73222 71.92 71.509 72.242 -3.7227 54 20 4 0 0 0 0.64382 1 14297 14297 10.074 0 1 12045000 + 47616 15578 31714 31734 46816 46816 0.05214365177630498 TVPTSTLKG 9 Unmodified _TVPTSTLKG_ 0 0 0 REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 452.260925 902.507297 0.16673 7.5405E-05 0.18454 8.3462E-05 0.35127 0.00015887 452.26099300429433 72.049 0.66638 72.049 71.669 72.336 0 0.11501 -8.9374E-05 NaN 10.074 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 9923200 + 47617 15578 31714 31734 0.05214365177630498 TVPTSTLKG 9 Unmodified _TVPTSTLKG_ 0 0 0 REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 452.260925 902.507297 -0.16829 -7.6109E-05 0.58496 0.00026456 0.41668 0.00018845 452.2611898376224 75.177 0.72045 71.813 71.45 72.171 -3.3643 -0.12143 0.00027281 NaN 10.074 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 13180000 + 47618 15578 31714 31734 0.05214365177630498 TVPTSTLKG 9 Unmodified _TVPTSTLKG_ 0 0 0 REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 452.260925 902.507297 0.19779 8.9453E-05 0.05095 2.3043E-05 0.24874 0.0001125 452.2609160907603 75.589 0.80405 71.955 71.57 72.375 -3.6337 0.020796 -0.00021021 NaN 10.074 52 22 3 NaN NaN NaN NaN 0 NaN NaN 0 10687000 + 47619 15578 31714 31734 0.05214365177630498 TVQCLRLHL 9 Unmodified _TVQCLRLHL_ 0 0 0 ENST00000367294.3_1_6:151789937-151790003:+|nuORF ENST00000367294.3_1_6:151789937-151790003:+|nuORF ENST00000367294.3_1_6:151789937-151790003:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2639770507812 2 541.810593 1081.60663 0.3276 0.0001775 3.8552 0.0020888 4.1828 0.0022663 542.3145235793216 154.36 0.1772 154.36 154.25 154.43 0 6 4 2 0 0 0 0.80521 1 30930 30930 10.824 0.024421 1 827580 47620 9064 31715 31735 46817 46817 0.06909484590710235 TVQCLRTV 8 Unmodified _TVQCLRTV_ 0 0 0 REV__ENSG00000115488|ENST00000233840|NEU2 REV__ENSG00000115488|ENST00000233840|NEU2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22711181640625 2 460.25512 918.495686 NaN NaN NaN NaN NaN NaN NaN 87.227 1 83.5 83 84 -3.727 0 0 0 0.21486 1 17054 17054 12.532 0 1 + 47621 15434 31716 31736 46818 46818 0.033178448826333806 TVQDCYHGDG 10 Unmodified _TVQDCYHGDG_ 0 0 0 LPA|p.E1653Rfs*6|1|0.38|ENSG00000198670|chr6:160556042-160556043|-/G|frameshift_variant;LPA|p.C1824Vfs*27|1|0.35|ENSG00000198670|chr6:160542738-160542738|C/-|frameshift_variant;ENSG00000198670|ENST00000316300|LPA LPA|p.E1653Rfs*6|1|0.38|ENSG00000198670|chr6:160556042-160556043|-/G|frameshift_variant LPA|p.E1653Rfs*6|1|0.38|ENSG00000198670|chr6:160556042-160556043|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7796020507812 2 547.714013 1093.41347 NaN NaN NaN NaN NaN NaN NaN 129.65 1 125.02 124.52 125.52 -4.6292 0 0 0 2.8426 1 25548 25548 0.063865 0 1 47622 7469 31717 31737 46819 46819 -0.12949721986979057 TVQGPADLWG 10 Unmodified _TVQGPADLWG_ 0 0 0 REV__ENST00000496704.1_1_2:130897130-130898075:-|nuORF REV__ENST00000496704.1_1_2:130897130-130898075:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2601318359375 2 522.261456 1042.50836 0.6486 0.00033874 -0.97085 -0.00050704 -0.32225 -0.0001683 522.2609599188614 79.504 0.86813 79.504 79.031 79.899 0 46 24 2 0 0 0 0.6817 1 15381 15381 13.042 0 1 6833000 + 47623 22393 31718 31738 46820 46820 -0.011194204534831442 TVQLCLNGL 9 Unmodified _TVQLCLNGL_ 0 0 0 REV__ENST00000354700.9_1_1:1228553-1228895:-|nuORF REV__ENST00000354700.9_1_1:1228553-1228895:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2412414550781 2 480.762778 959.511002 0.50868 0.00024456 -0.20373 -9.7948E-05 0.30495 0.00014661 480.7627795991713 113.49 0.66495 109.22 108.81 109.48 -4.2725 28 18 2 0 0 0 0.40602 1 21833 21833 25.399 3.6527 1 1015800 + 47624 20782 31719 31739 46821 46821 0.02962711679822405 TVQPPPPPP 9 Unmodified _TVQPPPPPP_ 0 0 0 REV__ENSG00000099822|ENST00000251287|HCN2 REV__ENSG00000099822|ENST00000251287|HCN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25701904296875 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 56.694 1 53.799 53.299 54.299 -2.8944 0 0 0 0.21408 1 10868 10868 19.439 0 1 + 47625 14644 31720 31740 46822 46822 0.034706863857991266 TVQPYIRLP 9 Unmodified _TVQPYIRLP_ 0 0 0 REV__ENST00000369660.8_1_X:153713524-153713629:-|nuORF REV__ENST00000369660.8_1_X:153713524-153713629:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7936401367188 2 543.818941 1085.62333 NaN NaN NaN NaN NaN NaN NaN 135.89 1 135.89 135.39 136.39 0 0 0 0 0.22962 1 26923 26923 14.838 0 1 + 47626 20966 31721 31741 46823 46823 0.08394308748302137 TVQQKWSSY 9 Unmodified _TVQQKWSSY_ 0 0 0 nc|ENSG00000011347|O43581-6|SYT7;nc|ENSG00000011347|O43581-5|SYT7;nc|ENSG00000011347|O43581-4|SYT7;ENSG00000011347|ENST00000539008|SYT7;SYT7|p.G300Afs*7|1|0.2|ENSG00000011347|chr11:61523835-61523835|C/-|frameshift_variant;SYT7|p.T301Hfs*35|1|0.26|ENSG00000011347|chr11:61523834-61523835|-/C|frameshift_variant nc|ENSG00000011347|O43581-6|SYT7 nc|ENSG00000011347|O43581-6|SYT7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.17523193359375 3 376.189101 1125.54547 0.31312 0.00011779 -0.56657 -0.00021314 -0.25346 -9.5348E-05 376.18888948304067 71.716 1.4271 68.088 67.664 69.091 -3.6275 119 39 6 0 0 0 0.72996 1 13636 13636 4.897 0 1 136660000 47627 1075 31722 31742 46824 46824 -0.012277489077177961 TVQRRGRP 8 Unmodified _TVQRRGRP_ 0 0 0 ENST00000354371.6_1_2:237994566-237994623:+|nuORF ENST00000354371.6_1_2:237994566-237994623:+|nuORF ENST00000354371.6_1_2:237994566-237994623:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 485.2869873046875 2 485.288674 968.562795 NaN NaN NaN NaN NaN NaN NaN 40.408 1 37.773 37.273 38.273 -2.6348 0 0 0 0.23487 1 7530 7530 0.12286 0.049601 1 47628 8944 31723 31743 46825 46825 0.07725636208613196 TVQTNQNGPK 10 Unmodified _TVQTNQNGPK_ 0 0 0 REV__ENST00000418595.1_1_6:112938557-112938875:-|nuORF REV__ENST00000418595.1_1_6:112938557-112938875:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7803955078125 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 169.04 1 164.11 163.61 164.61 -4.9295 0 0 0 0.22588 1 33354 33354 13.042 0 1 + 47629 18168 31724 31744 46826 46826 0.0071846546118194965 TVQWLLDNY 9 Unmodified _TVQWLLDNY_ 0 0 0 ENST00000589239.5_1_19:14080804-14104655:-|nuORF;RFX1|p.D621Hfs*20|1|0.23|ENSG00000132005|chr19:13966500-13966522|ACTGCAGGTTCACCATGACGTCG/-|frameshift_variant;ENSG00000132005|ENST00000254325|RFX1 ENST00000589239.5_1_19:14080804-14104655:-|nuORF ENST00000589239.5_1_19:14080804-14104655:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3228149414062 2 576.290214 1150.56587 NaN NaN NaN NaN NaN NaN NaN 31.179 1 31.179 30.679 31.679 0 0 0 0 0.23508 1 5622 5622 12.532 1.7076 1 47630 3705 31725 31745 46827 46827 -0.0033857824791994062 TVRADPLDPC 10 Unmodified _TVRADPLDPC_ 0 0 0 ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL ENSG00000116990|ENST00000372816|MYCL ENSG00000116990|ENST00000372816|MYCL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78515625 2 543.766049 1085.51754 NaN NaN NaN NaN NaN NaN NaN 155.78 1 150.53 150.03 151.03 -5.2526 0 0 0 2.8426 1 30210 30210 0.26539 0.14252 1 47631 2966 31726 31746 46828 46828 -0.021793951594645478 TVRDRVIDP 9 Unmodified _TVRDRVIDP_ 0 0 0 REV__USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant REV__USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5646667480469 3 357.536612 1069.58801 NaN NaN NaN NaN NaN NaN NaN 72.477 1 69.167 68.667 69.667 -3.3107 0 0 0 0.23508 1 14124 14124 7.1017 2.2047 1 + 47632 15251 31727 31747 46829 46829 0.055996462205030184 TVREIQRLY 9 Unmodified _TVREIQRLY_ 0 0 0 ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-2|ARHGAP8;nc|ENSG00000241484|P85298-5|ARHGAP8;ENST00000460809.5_1_22:45182338-45244945:+|nuORF;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298|ARHGAP8 ENSG00000241484|ENST00000356099|ARHGAP8 ENSG00000241484|ENST00000356099|ARHGAP8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.2910461425781 3 393.227779 1176.66151 0.030662 1.2057E-05 -0.35215 -0.00013847 -0.32149 -0.00012642 393.22751431950553 31.884 0.35004 29.653 29.586 29.936 -2.2305 13 9 2 0 0 0 0.8825 1 5835 5835 2.7352 0.64919 1 455820 47633 7852 31728 31748 46830 46830 0.08024194662993978 TVREIQRLY 9 Unmodified _TVREIQRLY_ 0 0 0 ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-2|ARHGAP8;nc|ENSG00000241484|P85298-5|ARHGAP8;ENST00000460809.5_1_22:45182338-45244945:+|nuORF;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298|ARHGAP8 ENSG00000241484|ENST00000356099|ARHGAP8 ENSG00000241484|ENST00000356099|ARHGAP8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 393.227779 1176.66151 0.2735 0.00010755 -0.58098 -0.00022846 -0.30748 -0.00012091 393.56184009923317 31.686 0.31642 29.66 29.517 29.833 -2.0264 0.0033391 -0.00011504 NaN 2.7352 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 513310 47634 7852 31728 31748 0.08024194662993978 TVRIGRPY 8 Unmodified _TVRIGRPY_ 0 0 0 REV__ENST00000373018.7_1_6:41745774-41747608:-|nuORF REV__ENST00000373018.7_1_6:41745774-41747608:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2531433105469 2 481.282526 960.550499 NaN NaN NaN NaN NaN NaN NaN 65.209 1 65.209 64.709 65.709 0 0 0 0 0.21486 1 12567 12567 10.183 4.423 1 + 47635 21037 31729 31749 46831 46831 0.06864599745551914 TVRIRRKRRRR 11 Unmodified _TVRIRRKRRRR_ 0 0 0 ENST00000480896.5_1_21:47746291-47746405:+|nuORF ENST00000480896.5_1_21:47746291-47746405:+|nuORF ENST00000480896.5_1_21:47746291-47746405:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 776.911865234375 2 777.014007 1552.01346 NaN NaN NaN NaN NaN NaN NaN 174.98 1 170.08 169.58 170.58 -4.8916 0 0 0 0.22632 1 34859 34859 0 0 1 47636 10364 31730 31750 46832 46832 0.2595350792150839 TVRKLKSKLR 10 Unmodified _TVRKLKSKLR_ 0 0 0 nc|ENSG00000114487|Q86VD1-2|MORC1;MORC1|p.N978Kfs*2|2|0.38|ENSG00000114487|chr3:108958986-108958987|-/T|frameshift_variant;ENSG00000114487|ENST00000232603|MORC1 nc|ENSG00000114487|Q86VD1-2|MORC1 nc|ENSG00000114487|Q86VD1-2|MORC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 615.1209716796875 2 614.914239 1227.81392 0.47194 0.0002902 -1.9679 -0.0012101 -1.4959 -0.00091987 614.9138286911158 167.18 0.10413 162.24 162.16 162.26 -4.948 4 2 2 0 0 0 0.91149 1 32839 32839 1.4819 1.0812 1 23357000 47637 2794 31731 31751 46833 46833 0.2091301513041799 TVRLCLKKKKR 11 Unmodified _TVRLCLKKKKR_ 0 0 0 AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|14|3|sense AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|14|3|sense AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|14|3|sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2371520996094 3 458.302624 1371.88604 0.45032 0.00020638 -0.081842 -3.7509E-05 0.36848 0.00016888 458.30279876777934 117.41 0.63471 113.03 112.67 113.31 -4.3801 27 17 2 0 0 0 0.89134 1 22583 22583 0.094841 0 1 1231000 47638 137 31732 31752 46834 46834 0.2149760621243786 TVRLCLKKKKR 11 Unmodified _TVRLCLKKKKR_ 0 0 0 AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|14|3|sense AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|14|3|sense AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|14|3|sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 458.302624 1371.88604 0.082042 3.76E-05 0.19142 8.7727E-05 0.27346 0.00012533 458.3028034372706 117.63 0.5629 113.13 112.75 113.32 -4.502 0.066509 0.00010239 NaN 0.094841 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1626800 47639 137 31732 31752 0.2149760621243786 TVRLESTLY 9 Unmodified _TVRLESTLY_ 0 0 0 PRRG3|p.S193Pfs*5|1|0.3|ENSG00000130032|chrX:151700908-151700908|C/-|frameshift_variant;ENSG00000130032|ENST00000674457|PRRG3 PRRG3|p.S193Pfs*5|1|0.3|ENSG00000130032|chrX:151700908-151700908|C/-|frameshift_variant PRRG3|p.S193Pfs*5|1|0.3|ENSG00000130032|chrX:151700908-151700908|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2695922851562 2 541.298039 1080.58152 0.29672 0.00016062 0.090074 4.8757E-05 0.3868 0.00020937 541.2979468172663 119.32 0.72601 119.32 118.89 119.62 0 32 20 2 0 0 0 0.25183 2 23557 23473;23557 34.402 4.5611 1 3843600 47640 3579 31733 31753 46835;46836 46836 0.04445708269145143 TVRPSSGPHGS 11 Unmodified _TVRPSSGPHGS_ 0 0 0 ENSG00000152292|ENST00000469800|SH2D6 ENSG00000152292|ENST00000469800|SH2D6 ENSG00000152292|ENST00000469800|SH2D6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2623291015625 2 541.272887 1080.53122 0.43924 0.00023775 -1.359 -0.00073558 -0.91974 -0.00049783 541.273906681864 124.75 0.4582 119.99 119.74 120.2 -4.7681 15 12 2 0 0 0 0.87468 1 23949 23949 15.248 9.0427 1 1083000 47641 4915 31734 31754 46837 46837 -0.005824013360097524 TVRPSSVYR 9 Unmodified _TVRPSSVYR_ 0 0 0 ENSG00000164946|ENST00000380880|FREM1;nc|ENSG00000164946|Q5H8C1-3|FREM1;nc|ENSG00000164946|Q5H8C1-2|FREM1 ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.281494140625 2 532.795998 1063.57744 0.0053309 2.8403E-06 0.095637 5.0955E-05 0.10097 5.3795E-05 532.7959802242206 53.197 0.78789 50.101 49.656 50.444 -3.0954 60 22 4 0 0 0 0.55539 1 9751 9751 16.149 0 1 5966500 47642 5580 31735 31755 46838 46838 0.048196635660815446 TVRRTWRRRRR 11 Unmodified _TVRRTWRRRRR_ 0 0 0 REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2716064453125 3 533.661085 1597.96143 0.093159 4.9716E-05 -2.3526 -0.0012555 -2.2595 -0.0012058 533.6588671228394 136.36 0.14143 131.72 131.64 131.78 -4.6399 5 3 2 0 0 0 0.96225 1 26891 26891 0.073264 0 1 1596800 + 47643 20308 31736 31756 46839 46839 0.18636344507740432 TVRTSWLPQ 9 Unmodified _TVRTSWLPQ_ 0 0 0 REV__ENST00000219334.9_1_16:68405177-68405606:-|nuORF REV__ENST00000219334.9_1_16:68405177-68405606:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7908325195312 2 544.298373 1086.58219 0.33802 0.00018398 -2.3212 -0.0012634 -1.9832 -0.0010794 544.7973900824088 146.79 0.1711 146.79 146.67 146.84 0 5 4 2 0 0 0 0.79204 1 29342 29342 3.9444 0 1 762480 + 47644 20028 31737 31757 46840 46840 0.042365477088424086 TVRVQQHRQ 9 Unmodified _TVRVQQHRQ_ 0 0 0 AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant;nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2 AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.336181640625 2 576.323245 1150.63194 NaN NaN NaN NaN NaN NaN NaN 164.05 1 159.01 158.51 159.51 -5.0446 0 0 0 0.22962 1 31961 31961 14.838 0.93222 1 47645 98 31738 31758 46841 46841 0.06264675437500955 TVRYGTAGP 9 Unmodified _TVRYGTAGP_ 0 0 0 REV__COL7A1|p.P1990Qfs*15|1|0.14|ENSG00000114270|chr3:48575636-48575636|G/-|frameshift_variant REV__COL7A1|p.P1990Qfs*15|1|0.14|ENSG00000114270|chr3:48575636-48575636|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.52587890625 2 461.243067 920.47158 0.0091065 4.2003E-06 0.3645 0.00016812 0.3736 0.00017232 461.24308885116955 53.931 0.20916 50.796 50.626 50.835 -3.1352 9 5 2 0 0 0 0.77732 1 9902 9902 1.8442 0 1 372040 + 47646 13498 31739 31759 46842 46842 0.00816327720622212 TVRYTHNFG 9 Unmodified _TVRYTHNFG_ 0 0 0 tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1 tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1 tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7710571289062 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 167.43 1 162.54 162.04 163.04 -4.8916 0 0 0 0.22251 1 32927 32927 16.942 5.302 1 47647 26122 31740 31760 46843 46843 -0.01253195985077582 TVSATRPS 8 Unmodified _TVSATRPS_ 0 0 0 ENSG00000147234|ENST00000683843|FRMPD3;FRMPD3|p.S1014Afs*18|1|0.32|ENSG00000147234|chrX:107600973-107600973|C/-|frameshift_variant;FRMPD3|p.S345Pfs*19|1|0.19|ENSG00000147234|chrX:107560755-107560755|C/-|frameshift_variant ENSG00000147234|ENST00000683843|FRMPD3 ENSG00000147234|ENST00000683843|FRMPD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.2337646484375 2 409.721967 817.429381 -0.29356 -0.00012028 0.18318 7.5052E-05 -0.11038 -4.5227E-05 409.7220050313757 42.857 1.0385 40.138 39.803 40.842 -2.7191 80 28 4 0 0 0 8448 1 8088 8088 1.7423 0 1 32242000 47648 4692 31741 31761 46844 46844 0.01336352312227973 TVSCCCCC 8 Unmodified _TVSCCCCC_ 0 0 0 ENST00000307851.8_1_5:156533808-156536017:-|nuORF ENST00000307851.8_1_5:156533808-156536017:-|nuORF ENST00000307851.8_1_5:156533808-156536017:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.10791015625 2 411.10958 820.204608 NaN NaN NaN NaN NaN NaN NaN 27.056 1 25.421 24.921 25.921 -1.6347 0 0 0 0.21486 1 4511 4511 0.69038 0 1 47649 8619 31742 31762 46845 46845 -0.21268624412289228 TVSCCCCCYY 10 Unmodified _TVSCCCCCYY_ 0 0 0 ENST00000307851.8_1_5:156533808-156536017:-|nuORF ENST00000307851.8_1_5:156533808-156536017:-|nuORF ENST00000307851.8_1_5:156533808-156536017:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 574.424560546875 2 574.172909 1146.33126 0.16694 9.585E-05 -0.69989 -0.00040186 -0.53295 -0.00030601 574.6732845764811 145.15 0.17441 140.08 139.97 140.15 -5.0671 7 4 2 0 0 0 1.1344 1 28029 28029 0.043787 0 1 1972700 47650 8619 31743 31763 46846 46846 -0.23604742977795468 TVSCLKRAPA 10 Unmodified _TVSCLKRAPA_ 0 0 0 SNTG1|p.F138C|1|0.47|ENSG00000147481|chr8:50502827-50502827|T/G|missense_variant SNTG1|p.F138C|1|0.47|ENSG00000147481|chr8:50502827-50502827|T/G|missense_variant SNTG1|p.F138C|1|0.47|ENSG00000147481|chr8:50502827-50502827|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.684326171875 2 523.294776 1044.575 0.43751 0.00022895 -0.8352 -0.00043705 -0.39768 -0.00020811 523.2943031271218 49.269 0.45674 49.269 49.09 49.547 0 20 12 2 0 0 0 0.86261 1 9358 9358 6.7232 0.51738 1 3267700 47651 25703 31744 31764 46847 46847 0.05449491836748166 TVSCSATFDI 10 Unmodified _TVSCSATFDI_ 0 0 0 REV__RELN|p.A2383T|1|0.21|ENSG00000189056|chr7:103539111-103539111|C/T|missense_variant REV__RELN|p.A2383T|1|0.21|ENSG00000189056|chr7:103539111-103539111|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2701416015625 2 522.239332 1042.46411 -0.20071 -0.00010482 -0.2302 -0.00012022 -0.4309 -0.00022503 522.2386060565694 137.55 0.45947 132.9 132.59 133.05 -4.6413 16 12 2 0 0 0 0.36162 1 27125 27125 14.405 2.1647 1 1900400 + 47652 24557 31745 31765 46848 46848 -0.05542192661982881 TVSCSATFDI 10 Unmodified _TVSCSATFDI_ 0 0 0 REV__RELN|p.A2383T|1|0.21|ENSG00000189056|chr7:103539111-103539111|C/T|missense_variant REV__RELN|p.A2383T|1|0.21|ENSG00000189056|chr7:103539111-103539111|C/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 522.239332 1042.46411 -0.20071 -0.00010482 -0.2302 -0.00012022 -0.4309 -0.00022503 522.2386060565694 137.55 0.45947 132.9 132.59 133.05 -4.6413 0.15406 -0.00017263 NaN 14.405 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1900400 + 47653 24557 31745 31765 -0.05542192661982881 TVSDAPPPPP 10 Unmodified _TVSDAPPPPP_ 0 0 0 REV__ENST00000502687.1_1_4:40818111-40824073:-|nuORF REV__ENST00000502687.1_1_4:40818111-40824073:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2556457519531 2 489.250557 976.486562 0.77613 0.00037972 -2.4033 -0.0011758 -1.6271 -0.00079607 489.2482746343406 22.538 0.3798 21.04 20.808 21.188 -1.4977 20 10 3 0 0 0 0.70357 1 3859 3859 10.824 0 1 595270 + 47654 17602 31746 31766 46849 46849 -0.0026222520206147237 TVSDAPPPPP 10 Unmodified _TVSDAPPPPP_ 0 0 0 REV__ENST00000502687.1_1_4:40818111-40824073:-|nuORF REV__ENST00000502687.1_1_4:40818111-40824073:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.250557 976.486562 0.1771 8.6645E-05 -4.0379 -0.0019756 -3.8609 -0.0018889 489.2486803643697 21.128 0.27996 21.128 20.951 21.231 0 0.09567 -0.00041268 NaN 10.824 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 343980 + 47655 17602 31746 31766 -0.0026222520206147237 TVSDAPPPPP 10 Unmodified _TVSDAPPPPP_ 0 0 0 REV__ENST00000502687.1_1_4:40818111-40824073:-|nuORF REV__ENST00000502687.1_1_4:40818111-40824073:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.250557 976.486562 0.77613 0.00037972 -2.4033 -0.0011758 -1.6271 -0.00079607 489.2482746343406 22.538 0.3798 21.04 20.808 21.188 -1.4977 0.0078152 0.0011869 NaN 10.824 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 595270 + 47656 17602 31746 31766 -0.0026222520206147237 TVSDAPPPPP 10 Unmodified _TVSDAPPPPP_ 0 0 0 REV__ENST00000502687.1_1_4:40818111-40824073:-|nuORF REV__ENST00000502687.1_1_4:40818111-40824073:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.250557 976.486562 0.0051351 2.5123E-06 -3.341 -0.0016346 -3.3359 -0.0016321 489.2485976456202 22.451 0.24338 20.997 20.876 21.119 -1.4535 -0.035403 0.00026927 NaN 10.824 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 396840 + 47657 17602 31746 31766 -0.0026222520206147237 TVSDAPPPPP 10 Unmodified _TVSDAPPPPP_ 0 0 0 REV__ENST00000502687.1_1_4:40818111-40824073:-|nuORF REV__ENST00000502687.1_1_4:40818111-40824073:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.250557 976.486562 -0.76951 -0.00037649 -3.2714 -0.0016005 -4.0409 -0.001977 489.2488565444248 22.753 0.27245 20.964 20.851 21.124 -1.7886 -0.068082 0.00033738 NaN 10.824 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 298240 + 47658 17602 31746 31766 -0.0026222520206147237 TVSDEMCSPL 10 Unmodified _TVSDEMCSPL_ 0 0 0 REV__ITGAX|p.V723M|1|0.35|ENSG00000140678|chr16:31372384-31372384|G/A|missense_variant REV__ITGAX|p.V723M|1|0.35|ENSG00000140678|chr16:31372384-31372384|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2764892578125 2 541.23065 1080.44675 NaN NaN NaN NaN NaN NaN NaN 152.35 1 147.12 146.62 147.62 -5.2365 0 0 0 0.22588 1 29538 29538 6.7232 0 1 + 47659 23679 31747 31767 46850 46850 -0.09025856259290777 TVSEQGDQSP 10 Unmodified _TVSEQGDQSP_ 0 0 0 REV__ENSG00000123066|ENST00000281928|MED13L REV__ENSG00000123066|ENST00000281928|MED13L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6944580078125 2 524.233093 1046.45163 -0.10961 -5.7463E-05 -1.0639 -0.00055773 -1.1735 -0.00061519 524.2323072015917 89.877 0.60448 85.833 85.486 86.091 -4.0443 37 16 3 0 0 0 0.64074 1 17120 17120 34.402 2.0962 1 5028000 + 47660 15713 31748 31768 46851 46851 -0.06973512800664139 TVSEYHIL 8 Unmodified _TVSEYHIL_ 0 0 0 REV__CSMD1|p.P1459Qfs*24|1|0.09|ENSG00000183117|chr8:3223840-3223840|G/-|frameshift_variant REV__CSMD1|p.P1459Qfs*24|1|0.09|ENSG00000183117|chr8:3223840-3223840|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2543640136719 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 154.4 1 154.4 153.9 154.9 0 0 0 0 0.21486 1 30947 30947 10.183 0 1 + 47661 13591 31749 31769 46852 46852 0.00982078660570096 TVSHLKSPASP 11 Unmodified _TVSHLKSPASP_ 0 0 0 REV__nc|ENSG00000167995|O76090-3|BEST1 REV__nc|ENSG00000167995|O76090-3|BEST1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2086486816406 3 375.208384 1122.60332 -0.42428 -0.00015919 0.59826 0.00022447 0.17398 6.5278E-05 375.2086345148117 52.366 0.35032 49.484 49.308 49.658 -2.8824 16 9 2 0 0 0 0.79848 1 9993 9993 3.8459 0.25885 1 1154000 + 47662 24153 31750 31770 46853 46853 0.04692513017721467 TVSILQASP 9 Unmodified _TVSILQASP_ 0 0 0 ENST00000586361.5_1_19:36386955-36387291:-|nuORF ENST00000586361.5_1_19:36386955-36387291:-|nuORF ENST00000586361.5_1_19:36386955-36387291:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23883056640625 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 88.522 1 84.772 84.272 85.272 -3.7501 0 0 0 0.21844 1 16946 16946 18.146 2.2992 1 47663 11549 31751 31771 46854 46854 0.04662365177614447 TVSLYMIFL 9 Unmodified _TVSLYMIFL_ 0 0 0 REV__tr|U7SRU9|U7SRU9_FUSNUCobaltABCtransporter,permeaseCbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01438PE=4SV=1 REV__tr|U7SRU9|U7SRU9_FUSNUCobaltABCtransporter,permeaseCbiQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01438PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.795166015625 2 543.798829 1085.5831 NaN NaN NaN NaN NaN NaN NaN 125.94 1 121.17 120.67 121.67 -4.7681 0 0 0 0.22251 1 24171 24171 16.942 3.4344 1 + 47664 25038 31752 31772 46855 46855 0.04373626033543587 TVSPAALV 8 Unmodified _TVSPAALV_ 0 0 0 nc|ENSG00000099866|Q13477-2|MADCAM1;nc|ENSG00000099866|Q13477-3|MADCAM1;ENSG00000099866|ENST00000215637|MADCAM1;nc|ENSG00000099866|Q13477-4|MADCAM1 nc|ENSG00000099866|Q13477-2|MADCAM1 nc|ENSG00000099866|Q13477-2|MADCAM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 379.2254943847656 2 379.226354 756.438155 NaN NaN NaN NaN NaN NaN NaN 30.549 1 28.475 27.975 28.975 -2.0743 0 0 0 0.23664 1 5236 5236 3.2813 2.6545 1 47665 1907 31753 31773 46856 46856 0.05019325948705955 TVSRLAQGSPA 11 Unmodified _TVSRLAQGSPA_ 0 0 0 SH3PXD2A|p.S529Afs*43|5|0.21|ENSG00000107957|chr10:103603634-103603634|G/-|frameshift_variant;nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A;SH3PXD2A|p.Q1067Vfs*5|1|0.08|ENSG00000107957|chr10:103602018-103602019|TG/-|frameshift_variant;nc|ENSG00000107957|Q5TCZ1-3|SH3PXD2A;SH3PXD2A|p.V1096Cfs*22|1|0.36|ENSG00000107957|chr10:103601932-103601932|C/-|frameshift_variant;ENSG00000107957|ENST00000369774|SH3PXD2A SH3PXD2A|p.S529Afs*43|5|0.21|ENSG00000107957|chr10:103603634-103603634|G/-|frameshift_variant SH3PXD2A|p.S529Afs*43|5|0.21|ENSG00000107957|chr10:103603634-103603634|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7930908203125 2 543.798737 1085.58292 NaN NaN NaN NaN NaN NaN NaN 133.37 1 128.73 128.23 129.23 -4.6399 0 0 0 0.22683 1 26295 26295 10.8 2.644 1 47666 2452 31754 31774 46857 46857 0.043553423578941874 TVSRPLRN 8 Unmodified _TVSRPLRN_ 0 0 0 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.8656311035156 3 314.854164 941.540663 NaN NaN NaN NaN NaN NaN NaN 9.3002 1 8.506 8.006 9.006 -0.79424 0 0 0 0.21486 1 1061 1061 0.45834 0 1 + 47667 18402 31755 31775 46858 46858 0.06755411740175532 TVSSVGGG 8 Unmodified _TVSSVGGG_ 0 0 0 REV__ENST00000307564.8_1_9:117099024-117099306:-|nuORF REV__ENST00000307564.8_1_9:117099024-117099306:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.1700744628906 2 332.169036 662.323519 NaN NaN NaN NaN NaN NaN NaN 61.966 1 59.005 58.505 59.505 -2.9614 0 0 0 0.21486 1 11950 11950 5.7604 0 1 + 47668 20448 31756 31776 46859 46859 -0.02114983533215309 TVSVAGVQL 9 Unmodified _TVSVAGVQL_ 0 0 0 ENST00000304189.6_1_20:820148-825421:+|nuORF ENST00000304189.6_1_20:820148-825421:+|nuORF ENST00000304189.6_1_20:820148-825421:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2358093261719 2 437.255643 872.496732 0.18848 8.2414E-05 0.10724 4.6891E-05 0.29572 0.0001293 437.25565854682714 72.343 0.66009 68.805 68.501 69.162 -3.5385 43 18 3 0 0 0 0.10047 1 13721 13721 71.922 2.8174 1 3763600 47669 8590 31757 31777 46860 46860 0.05538382523195651 TVSVGHCH 8 Unmodified _TVSVGHCH_ 0 0 0 nc|ENSG00000113492|Q9BYV1-2|AGXT2;ENSG00000113492|ENST00000231420|AGXT2 nc|ENSG00000113492|Q9BYV1-2|AGXT2 nc|ENSG00000113492|Q9BYV1-2|AGXT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.1842041015625 2 420.195062 838.375571 -0.024972 -1.0493E-05 2.7733 0.0011653 2.7484 0.0011548 420.19533806268856 143.67 0.77425 138.77 138.4 139.18 -4.8982 49 21 3 0 0 0 8448 1 27729 27729 1.7423 0 1 4877300 47670 2745 31758 31778 46861 46861 -0.05008143391125941 TVSVGHCH 8 Unmodified _TVSVGHCH_ 0 0 0 nc|ENSG00000113492|Q9BYV1-2|AGXT2;ENSG00000113492|ENST00000231420|AGXT2 nc|ENSG00000113492|Q9BYV1-2|AGXT2 nc|ENSG00000113492|Q9BYV1-2|AGXT2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 420.195062 838.375571 -0.098674 -4.1462E-05 1.9526 0.00082048 1.8539 0.00077902 420.1953868622761 143.36 0.69835 138.71 138.37 139.07 -4.656 -0.031921 -0.0001713 NaN 1.7423 38 19 3 NaN NaN NaN NaN 0 NaN NaN 0 5764400 47671 2745 31758 31778 -0.05008143391125941 TVSVLQASL 9 Unmodified _TVSVLQASL_ 0 0 0 nc|ENSG00000075945|Q92845-4|KIFAP3 nc|ENSG00000075945|Q92845-4|KIFAP3 nc|ENSG00000075945|Q92845-4|KIFAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2362976074219 2 459.26875 916.522947 -0.090462 -4.1546E-05 0.57813 0.00026551 0.48766 0.00022397 459.2688288907388 82.299 0.73363 78.742 78.344 79.078 -3.557 49 20 3 0 0 0 0.19983 2 16030 16030;16044 1.2148 0.80657 1 4132200 47672 12235 31759 31779 46862;46863 46862 0.061346516946514384 TVSVLQASL 9 Unmodified _TVSVLQASL_ 0 0 0 nc|ENSG00000075945|Q92845-4|KIFAP3 nc|ENSG00000075945|Q92845-4|KIFAP3 nc|ENSG00000075945|Q92845-4|KIFAP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2395935058594 2 459.26875 916.522947 0.031611 1.4518E-05 0.49308 0.00022646 0.52469 0.00024097 459.2688382908103 82.667 0.68636 78.794 78.433 79.119 -3.8736 48 19 3 0 0 0 0.19983 1 15686 15686 2.6312 2.223 1 3100900 47673 12235 31759 31779 46864 46864 0.061346516946514384 TVSVLQASL 9 Unmodified _TVSVLQASL_ 0 0 0 nc|ENSG00000075945|Q92845-4|KIFAP3 nc|ENSG00000075945|Q92845-4|KIFAP3 nc|ENSG00000075945|Q92845-4|KIFAP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 459.26875 916.522947 0.62699 0.00028796 -0.31077 -0.00014273 0.31622 0.00014523 459.26860830910687 78.434 0.49187 78.434 78.191 78.683 0 -0.22258 -0.0005655 NaN 1.2148 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1119500 47674 12235 31759 31779 0.061346516946514384 TVSWIPPTY 9 Unmodified _TVSWIPPTY_ 0 0 0 ENST00000556407.5_1_14:101246096-101295426:+|nuORF;ENST00000455286.1_1_14:101293843-101295426:+|nuORF ENST00000556407.5_1_14:101246096-101295426:+|nuORF ENST00000556407.5_1_14:101246096-101295426:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2823486328125 2 532.276575 1062.5386 0.10228 5.4442E-05 -1.4402 -0.00076656 -1.3379 -0.00071212 532.2746135541951 57.283 0.7886 54.107 53.751 54.54 -3.1761 51 21 3 0 0 0 0.44262 1 10710 10710 23.148 0.49034 1 2451400 47675 10020 31760 31780 46865 46865 0.009829382117231944 TVSWIPPTY 9 Unmodified _TVSWIPPTY_ 0 0 0 ENST00000556407.5_1_14:101246096-101295426:+|nuORF;ENST00000455286.1_1_14:101293843-101295426:+|nuORF ENST00000556407.5_1_14:101246096-101295426:+|nuORF ENST00000556407.5_1_14:101246096-101295426:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.276575 1062.5386 0.048053 2.5577E-05 -3.7795 -0.0020117 -3.7314 -0.0019861 532.2745871136485 54.06 0.71081 54.06 53.744 54.455 0 -0.026809 -0.00040882 NaN 23.148 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2736800 47676 10020 31760 31780 0.009829382117231944 TVSYISKEH 9 Unmodified _TVSYISKEH_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20;ENST00000551825.1_1_12:101673946-101684681:+|nuORF;UTP20|p.A1865Sfs*12|1|0.08|ENSG00000120800|chr12:101356982-101356983|-/ATCCTTTAGTC|frameshift_variant ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2827758789062 2 532.274564 1062.53457 0.10228 5.4442E-05 2.3387 0.0012448 2.441 0.0012993 532.2746135541951 57.283 0.7886 54.107 53.751 54.54 -3.1761 51 21 3 0 0 0 0.62102 1 10752 10752 11.64 0.81637 1 2451400 47677 3154 31761 31781 46866 46866 0.0058084871798200766 TVTAKEDEEE 10 Unmodified _TVTAKEDEEE_ 0 0 0 nc|ENSG00000130226|P42658-2|DPP6;ENSG00000130226|ENST00000377770|DPP6 nc|ENSG00000130226|P42658-2|DPP6 nc|ENSG00000130226|P42658-2|DPP6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3174438476562 2 575.75914 1149.50373 0.2369 0.00013639 -1.3398 -0.00077138 -1.1029 -0.00063498 576.2596637263734 136.36 0.21744 131.53 131.34 131.56 -4.8307 5 3 2 0 0 0 0.90598 1 26255 26255 2.9952 0 1 2294600 47678 3593 31762 31782 46867 46867 -0.06504394177568429 TVTAPTPAQA 10 Unmodified _TVTAPTPAQA_ 0 0 0 GTF2A1|p.A241T|1|0.42|ENSG00000165417|chr14:81192731-81192731|C/T|missense_variant GTF2A1|p.A241T|1|0.42|ENSG00000165417|chr14:81192731-81192731|C/T|missense_variant GTF2A1|p.A241T|1|0.42|ENSG00000165417|chr14:81192731-81192731|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7314758300781 2 478.756007 955.497461 NaN NaN NaN NaN NaN NaN NaN 77.577 1 77.577 77.077 78.077 0 0 0 0 0.22323 1 15084 15084 24.021 0.87215 1 47679 11868 31763 31783 46868 46868 0.017931771722260237 TVTEGVNAPR 10 Unmodified _TVTEGVNAPR_ 0 0 0 REV__ENSG00000106018|ENST00000262178|VIPR2 REV__ENSG00000106018|ENST00000262178|VIPR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.268310546875 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 105.62 1 101.35 100.85 101.85 -4.2638 0 0 0 0.22588 1 20786 20786 13.042 0.51092 1 + 47680 15028 31764 31784 46869 46869 0.021153669495106442 TVTEGVNAPR 10 Unmodified _TVTEGVNAPR_ 0 0 0 REV__ENSG00000106018|ENST00000262178|VIPR2 REV__ENSG00000106018|ENST00000262178|VIPR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.278076171875 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 105.68 1 101.41 100.91 101.91 -4.2638 0 0 0 0.22583 1 20799 20799 13.906 0.86358 1 + 47681 15028 31764 31784 46870 46870 0.021153669495106442 TVTEKKEDTT 10 Unmodified _TVTEKKEDTT_ 0 0 0 REV__ENSG00000135968|ENST00000309863|GCC2 REV__ENSG00000135968|ENST00000309863|GCC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3157958984375 2 576.29315 1150.57175 NaN NaN NaN NaN NaN NaN NaN 163.88 1 159.09 158.59 159.59 -4.7898 0 0 0 0.22588 1 32704 32704 8.1555 1.4324 1 + 47682 16304 31765 31785 46871 46871 0.002484754731085559 TVTFAADPED 10 Unmodified _TVTFAADPED_ 0 0 0 ENST00000474478.5_1_1:226048558-226048795:-|nuORF;ENSG00000196187|ENST00000366835|TMEM63A ENST00000474478.5_1_1:226048558-226048795:-|nuORF ENST00000474478.5_1_1:226048558-226048795:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.269775390625 2 533.240386 1064.46622 NaN NaN NaN NaN NaN NaN NaN 92.02 1 88.095 87.595 88.595 -3.9251 0 0 0 0.21574 1 18018 18018 25.399 3.6527 1 47683 7241 31766 31786 46872 46872 -0.06343440652517529 TVTFLWKVSA 10 Unmodified _TVTFLWKVSA_ 0 0 0 ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B;ENST00000588921.1_3_18:77132616-77137380:+|nuORF ENSG00000166377|ENST00000426216|ATP9B ENSG00000166377|ENST00000426216|ATP9B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3276977539062 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 166.56 1 161.61 161.11 162.11 -4.9484 0 0 0 2.8426 1 32656 32656 0.26539 0 1 47684 5716 31767 31787 46873 46873 0.06935175545527272 TVTGESPQP 9 Unmodified _TVTGESPQP_ 0 0 0 CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2293701171875 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 83.345 1 79.471 78.971 79.971 -3.8736 0 0 0 0.20155 1 15829 15829 23.148 0 1 47685 727 31768 31788 46874 46874 -0.026113886158100286 TVTGESPQP 9 Unmodified _TVTGESPQP_ 0 0 0 CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.238525390625 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 83.408 1 79.535 79.035 80.035 -3.8736 0 0 0 0.22621 1 15842 15842 15.847 2.3393 1 47686 727 31768 31788 46875 46875 -0.026113886158100286 TVTINTLGV 9 Unmodified _TVTINTLGV_ 0 0 0 REV__nc|ENSG00000141956|P57071|PRDM15 REV__nc|ENSG00000141956|P57071|PRDM15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2461853027344 2 459.26875 916.522947 0.24291 0.00011156 0.03111 1.4288E-05 0.27402 0.00012585 459.26871031341443 147.5 1.2837 147.5 146.94 148.23 0 97 36 4 0 0 0 0.16442 1 29422 29422 42.095 7.9921 1 74709000 + 47687 24076 31769 31789 46876 46876 0.06134651694674176 TVTLLILFLKI 11 Unmodified _TVTLLILFLKI_ 0 0 0 ENST00000591247.5_1_17:42113248-42113383:-|nuORF ENST00000591247.5_1_17:42113248-42113383:-|nuORF ENST00000591247.5_1_17:42113248-42113383:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2515563964844 3 425.287975 1272.8421 NaN NaN NaN NaN NaN NaN NaN 121.15 1 116.62 116.12 117.12 -4.5305 0 0 0 0.22632 1 23326 23326 0.00056442 0 1 47688 11614 31770 31790 46877 46877 0.21658900267129866 TVTLQVAHMS 10 Unmodified _TVTLQVAHMS_ 0 0 0 ENSG00000249715|ENST00000624922|FER1L5;FER1L5|p.K1269Efs*5|1|0.36|ENSG00000249715|chr2:96694446-96694447|AA/-|frameshift_variant;FER1L5|p.Q1290Pfs*29|1|0.44|ENSG00000249715|chr2:96695548-96695549|-/C|frameshift_variant;ENST00000505256.6_1_2:97312155-97317763:+|nuORF ENSG00000249715|ENST00000624922|FER1L5 ENSG00000249715|ENST00000624922|FER1L5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7821655273438 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 19.252 1 17.617 17.117 18.117 -1.6351 0 0 0 2.8426 1 2894 2894 0.043787 0 1 47689 7899 31771 31791 46878 46878 0.0145748173724769 TVTMKRNL 8 Unmodified _TVTMKRNL_ 0 0 0 nc|ENSG00000011347|O43581-6|SYT7;nc|ENSG00000011347|O43581-5|SYT7;nc|ENSG00000011347|O43581-4|SYT7;ENSG00000011347|ENST00000539008|SYT7;nc|ENSG00000011347|O43581|SYT7;nc|ENSG00000011347|O43581-2|SYT7;ENST00000539246.5_1_11:61286101-61314074:-|nuORF;ENST00000539468.5_1_11:61286101-61314074:-|nuORF nc|ENSG00000011347|O43581-6|SYT7 nc|ENSG00000011347|O43581-6|SYT7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77911376953125 2 481.776219 961.537886 NaN NaN NaN NaN NaN NaN NaN 99.708 1 95.411 94.911 95.911 -4.297 0 0 0 0.22647 1 19061 19061 0.25148 0 1 47690 1075 31772 31792 46879 46879 0.05557820291005555 TVTSEKLFR 9 Unmodified _TVTSEKLFR_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76423133-76435249:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2620239257812 2 540.806031 1079.59751 0.30084 0.0001627 0.88151 0.00047673 1.1824 0.00063943 541.3086704269217 142.54 0.31607 142.54 142.41 142.72 0 9 8 2 0 0 0 0.60061 1 28445 28445 13.042 0 1 6341000 47691 7127 31773 31793 46880 46880 0.060894145060501614 TVTSEKLFR 9 Unmodified _TVTSEKLFR_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76423133-76435249:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2604370117188 2 540.806031 1079.59751 0.28016 0.00015151 0.24873 0.00013451 0.52889 0.00028603 541.3074944451545 145.55 0.90515 140.88 140.27 141.17 -4.6694 27 22 2 0 0 0 0.57447 2 28809 28809;28820 14.838 0 1 22330000 47692 7127 31773 31793 46881;46882 46881 0.060894145060501614 TVTSEKLFR 9 Unmodified _TVTSEKLFR_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76423133-76435249:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.267578125 2 540.806031 1079.59751 0.2553 0.00013807 0.11147 6.0284E-05 0.36677 0.00019835 541.3083162652267 142.09 0.3454 137.44 137.31 137.65 -4.6493 12 9 2 0 0 0 0.76312 1 28111 28111 16.149 0 1 5068500 47693 7127 31773 31793 46883 46883 0.060894145060501614 TVTSEKLFR 9 Unmodified _TVTSEKLFR_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76423133-76435249:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.26025390625 2 540.806031 1079.59751 0.16343 8.8386E-05 4.2139 0.0022789 4.3773 0.0023673 541.3103693274091 141.49 0.46156 136.5 136.1 136.56 -4.9877 15 12 2 0 0 0 0.73268 1 27243 27243 18.146 0 1 4186300 47694 7127 31773 31793 46884 46884 0.060894145060501614 TVTSEKLFR 9 Unmodified _TVTSEKLFR_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76423133-76435249:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2714233398438 2 540.806031 1079.59751 0.40357 0.00021825 0.25269 0.00013666 0.65626 0.00035491 541.3076432876206 146.66 0.77795 141.66 141.29 142.07 -5 35 21 2 0 0 0 0.76271 1 28326 28326 14.838 0 1 16178000 47695 7127 31773 31793 46885 46885 0.060894145060501614 TVTSEKLFR 9 Unmodified _TVTSEKLFR_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76423133-76435249:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.806031 1079.59751 0.29285 0.00015837 0.535 0.00028933 0.82785 0.0004477 541.3075601143806 147.36 0.20859 142.67 142.51 142.72 -4.6868 0.066359 -0.00014481 NaN 13.042 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 6059600 47696 7127 31773 31793 0.060894145060501614 TVTSVLTSV 9 Unmodified _TVTSVLTSV_ 0 0 0 ENSG00000106689|ENST00000373615|LHX2 ENSG00000106689|ENST00000373615|LHX2 ENSG00000106689|ENST00000373615|LHX2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7601318359375 2 453.760758 905.506963 NaN NaN NaN NaN NaN NaN NaN 160.22 1 160.22 159.72 160.72 0 0 0 0 0.20628 1 32170 32170 21.747 0 1 47697 2401 31774 31794 46886 46886 0.0504294545777384 TVTSVPHILAN 11 Unmodified _TVTSVPHILAN_ 0 0 0 REV__nc|ENSG00000197093|Q96RP7-2|GAL3ST4 REV__nc|ENSG00000197093|Q96RP7-2|GAL3ST4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3176879882812 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 136.72 1 136.72 136.22 137.22 0 0 0 0 0.22632 1 27100 27100 0.03141 0 1 + 47698 19303 31775 31795 46887 46887 0.0653308605183156 TVTTVILEV 9 Unmodified _TVTTVILEV_ 0 0 0 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 487.4519958496094 2 487.792058 973.569563 0.21216 0.00010349 -0.076406 -3.727E-05 0.13575 6.6217E-05 487.79204255573353 162.41 0.64285 157.22 156.79 157.43 -5.1878 34 18 2 0 0 0 7.3708E-06 1 31516 31516 67.838 36.11 1 7236500 47699 3062 31776 31796 46888 46888 0.08172091525955238 TVTTVILEV 9 Unmodified _TVTTVILEV_ 0 0 0 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 487.792058 973.569563 0.17463 8.5183E-05 0.08688 4.2379E-05 0.26151 0.00012756 487.792004544195 156.98 0.82344 156.98 156.48 157.31 0 -0.094028 0.00015222 NaN 67.838 38 23 2 NaN NaN NaN NaN 0 NaN NaN 0 2611700 47700 3062 31776 31796 0.08172091525955238 TVTTVILEV 9 Unmodified _TVTTVILEV_ 0 0 0 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 487.792058 973.569563 0.31685 0.00015456 0.10982 5.3571E-05 0.42667 0.00020813 487.79203134883267 161.63 0.77692 156.85 156.42 157.2 -4.7898 -0.2293 0.0001746 NaN 67.838 56 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6495100 47701 3062 31776 31796 0.08172091525955238 TVTTVILEV 9 Unmodified _TVTTVILEV_ 0 0 0 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 487.792058 973.569563 0.33517 0.00016349 -0.3958 -0.00019307 -0.060626 -2.9573E-05 487.791840257724 162.39 0.54805 157.25 156.89 157.44 -5.1438 0.17611 -0.00031867 NaN 67.838 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 6166400 47702 3062 31776 31796 0.08172091525955238 TVVAALTNLKG 11 Unmodified _TVVAALTNLKG_ 0 0 0 REV__SLC12A9|p.L559Cfs*36|2|0.2|ENSG00000146828|chr7:100861868-100861868|G/-|frameshift_variant REV__SLC12A9|p.L559Cfs*36|2|0.2|ENSG00000146828|chr7:100861868-100861868|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7965698242188 2 543.829506 1085.64446 NaN NaN NaN NaN NaN NaN NaN 10.34 1 10.34 9.84 10.84 0 0 0 0 0.23698 1 1286 1286 0 0 1 + 47703 16901 31777 31797 46889 46889 0.10506274057138398 TVVATVLAT 9 Unmodified _TVVATVLAT_ 0 0 0 nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;PCDH7|p.H835Tfs*53|1|0.16|ENSG00000169851|chr4:31142537-31142537|C/-|frameshift_variant;ENSG00000169851|ENST00000695919|PCDH7;PCDH7|p.K1017Nfs*110|1|0.13|ENSG00000169851|chr4:30724467-30724467|A/-|frameshift_variant;PCDH7|p.D918Ifs*209|1|0.36|ENSG00000169851|chr4:30724168-30724168|A/-|frameshift_variant nc|ENSG00000169851|O60245|PCDH7 nc|ENSG00000169851|O60245|PCDH7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21697998046875 2 437.765843 873.517133 0.16407 7.1825E-05 -0.10211 -4.47E-05 0.061964 2.7126E-05 437.76569548285715 123.09 0.77663 123.09 122.75 123.52 0 47 21 3 0 0 0 0.65155 1 24209 24209 15.847 0 1 6577100 47704 6010 31778 31798 46890 46890 0.07531553182980133 TVVEQGQASY 10 Unmodified _TVVEQGQASY_ 0 0 0 nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;MST1R|p.S761Pfs*11|1|0.43|ENSG00000164078|chr3:49896794-49896800|ACCAGGT/-|frameshift_variant;MST1R|p.G755Vfs*19|3|0.19|ENSG00000164078|chr3:49896810-49896810|C/-|frameshift_variant;nc|ENSG00000164078|Q04912-5|MST1R nc|ENSG00000164078|Q04912-7|MST1R nc|ENSG00000164078|Q04912-7|MST1R MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2611694335938 2 541.261653 1080.50875 NaN NaN NaN NaN NaN NaN NaN 78.258 1 74.795 74.295 75.295 -3.4633 0 0 0 0.22535 1 15281 15281 20.415 5.1661 1 47705 5504 31779 31799 46891 46891 -0.028280455242793323 TVVEQGQASY 10 Unmodified _TVVEQGQASY_ 0 0 0 nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;MST1R|p.S761Pfs*11|1|0.43|ENSG00000164078|chr3:49896794-49896800|ACCAGGT/-|frameshift_variant;MST1R|p.G755Vfs*19|3|0.19|ENSG00000164078|chr3:49896810-49896810|C/-|frameshift_variant;nc|ENSG00000164078|Q04912-5|MST1R nc|ENSG00000164078|Q04912-7|MST1R nc|ENSG00000164078|Q04912-7|MST1R MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2835693359375 2 541.261653 1080.50875 0.10118 5.4766E-05 1.5985 0.00086523 1.6997 0.00091999 541.2629069865609 78.189 1.155 74.53 74.129 75.284 -3.6588 43 16 3 0 0 0 0.4708 1 14934 14934 26.268 1.2772 1 5026600 47706 5504 31779 31799 46892 46892 -0.028280455242793323 TVVERLVKV 9 Unmodified _TVVERLVKV_ 0 0 0 nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6;ENST00000562408.1_1_16:28128533-28137161:-|nuORF nc|ENSG00000169180|Q96QU8-2|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.279052734375 2 521.834591 1041.65463 0.3828 0.00019976 0.026289 1.3718E-05 0.40909 0.00021348 521.8345244302925 83.161 0.63673 83.161 82.942 83.578 0 25 17 2 0 0 0 0.6202 1 16256 16256 27.223 11.975 1 2245300 47707 5966 31780 31800 46893 46893 0.13546881782394848 TVVERLVKV 9 Unmodified _TVVERLVKV_ 0 0 0 nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6;ENST00000562408.1_1_16:28128533-28137161:-|nuORF nc|ENSG00000169180|Q96QU8-2|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.271728515625 2 521.834591 1041.65463 -0.28884 -0.00015073 0.67118 0.00035024 0.38234 0.00019952 521.8349101420008 86.451 0.46234 82.724 82.479 82.941 -3.727 19 12 2 0 0 0 0.30018 1 16887 16887 43.982 22.445 1 2090400 47708 5966 31780 31800 46894 46894 0.13546881782394848 TVVERLVKV 9 Unmodified _TVVERLVKV_ 0 0 0 nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6;ENST00000562408.1_1_16:28128533-28137161:-|nuORF nc|ENSG00000169180|Q96QU8-2|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2666015625 2 521.834591 1041.65463 -0.4452 -0.00023232 0.72346 0.00037753 0.27827 0.00014521 521.8348986692879 86.685 0.6293 82.735 82.401 83.03 -3.9503 27 17 2 0 0 0 0.36193 1 16496 16496 34.222 14.86 1 2852900 47709 5966 31780 31800 46895 46895 0.13546881782394848 TVVLRVRPQ 9 Unmodified _TVVLRVRPQ_ 0 0 0 nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.0723571777344 3 356.560981 1066.66111 -0.038806 -1.3837E-05 0.12486 4.4519E-05 0.086051 3.0682E-05 356.56103115721476 43.443 1.137 40.677 40.392 41.529 -2.7661 51 31 2 0 0 0 0.8799 1 7995 7995 0.96228 0 1 745480 47710 4256 31781 31801 46896 46896 0.13044819733772783 TVVLRVRPQ 9 Unmodified _TVVLRVRPQ_ 0 0 0 nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 356.560981 1066.66111 -0.094659 -3.3752E-05 0.39017 0.00013912 0.29551 0.00010537 356.56115925119707 40.639 0.17505 40.639 40.534 40.709 0 -0.11005 1.5444E-05 NaN 0.96228 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 872310 47711 4256 31781 31801 0.13044819733772783 TVVLRVRPQ 9 Unmodified _TVVLRVRPQ_ 0 0 0 nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 356.560981 1066.66111 -0.73536 -0.0002622 0.80824 0.00028819 0.07288 2.5986E-05 356.8956179903991 43.542 0.94189 40.794 40.591 41.533 -2.7475 0.044995 0.00046265 NaN 0.96228 38 26 2 NaN NaN NaN NaN 0 NaN NaN 0 714630 47712 4256 31781 31801 0.13044819733772783 TVVLSLKKFLK 11 Unmodified _TVVLSLKKFLK_ 0 0 0 ENST00000567674.1_1_16:68721613-68732300:+|nuORF;nc|ENSG00000062038|P22223-2|CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3 ENST00000567674.1_1_16:68721613-68732300:+|nuORF ENST00000567674.1_1_16:68721613-68732300:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.154296875 4 319.715425 1274.83259 -0.22017 -7.0391E-05 0.035713 1.1418E-05 -0.18445 -5.8973E-05 319.7152582856014 63.373 0.53877 60.375 60.086 60.625 -2.9975 28 15 3 0 0 0 0.96227 1 12213 12213 0.094841 0 1 1212200 47713 1322 31782 31802 46897 46897 0.2061713198158941 TVVLSLKKFLK 11 Unmodified _TVVLSLKKFLK_ 0 0 0 ENST00000567674.1_1_16:68721613-68732300:+|nuORF;nc|ENSG00000062038|P22223-2|CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3 ENST00000567674.1_1_16:68721613-68732300:+|nuORF ENST00000567674.1_1_16:68721613-68732300:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 319.715425 1274.83259 -0.42291 -0.00013521 0.0041517 1.3274E-06 -0.41876 -0.00013388 319.7154187358342 63.647 0.4474 60.39 60.229 60.677 -3.2567 0.0072916 -1.7524E-05 NaN 0.094841 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1016200 47714 1322 31782 31802 0.2061713198158941 TVVNDERF 8 Unmodified _TVVNDERF_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2576599121094 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 22.779 1 20.991 20.491 21.491 -1.7886 0 0 0 0.23782 1 3633 3633 0.0082765 0 1 47715 1547 31783 31803 46898 46898 -0.013039934875791914 TVVNNYGY 8 Unmodified _TVVNNYGY_ 0 0 0 REV__ENSG00000158859|ENST00000367996|ADAMTS4 REV__ENSG00000158859|ENST00000367996|ADAMTS4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.242919921875 2 465.2218 928.429047 0.40166 0.00018686 -0.39305 -0.00018286 0.0086082 4.0047E-06 465.22146657329284 119.36 0.86948 114.89 114.36 115.23 -4.467 40 24 2 0 0 0 0.73426 1 23026 23026 9.3474 9.3474 1 1677700 + 47716 17350 31784 31804 46899 46899 -0.03803067407625349 TVVVNPAKPDT 11 Unmodified _TVVVNPAKPDT_ 0 0 0 REV__ENSG00000111348|ENST00000228945|ARHGDIB REV__ENSG00000111348|ENST00000228945|ARHGDIB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2209777832031 3 380.880156 1139.61864 -0.07286 -2.7751E-05 0.51298 0.00019538 0.44012 0.00016763 380.88020890491623 36.951 0.55651 36.951 36.704 37.261 0 32 15 3 0 0 0 0.79848 1 6794 6794 3.8459 0.25885 1 1385700 + 47717 15240 31785 31805 46900 46900 0.05441379814897118 TVVVQPLFY 9 Unmodified _TVVVQPLFY_ 0 0 0 REV__ATG2A|p.G1473Afs*14|1|0.28|ENSG00000110046|chr11:64900540-64900540|C/-|frameshift_variant REV__ATG2A|p.G1473Afs*14|1|0.28|ENSG00000110046|chr11:64900540-64900540|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2723388671875 2 533.302593 1064.59063 NaN NaN NaN NaN NaN NaN NaN 129.78 1 124.94 124.44 125.44 -4.8355 0 0 0 0.23508 1 24915 24915 12.532 0.89125 1 + 47718 13144 31786 31806 46901 46901 0.060921016254724236 TVVYRQPG 8 Unmodified _TVVYRQPG_ 0 0 0 ENSG00000211584|ENST00000442218|SLC48A1 ENSG00000211584|ENST00000442218|SLC48A1 ENSG00000211584|ENST00000442218|SLC48A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.236572265625 2 460.253434 918.492316 -0.29818 -0.00013724 0.93134 0.00042865 0.63316 0.00029142 460.25382987085095 53.269 0.91073 50.385 49.892 50.803 -2.8837 31 25 2 0 0 0 0.82854 1 10192 10192 1.7423 0.0504 1 676350 47719 7678 31787 31807 46902 46902 0.029809181002860896 TVWAPRLP 8 Unmodified _TVWAPRLP_ 0 0 0 nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B;nc|ENSG00000139364|Q14DG7-3|TMEM132B nc|ENSG00000139364|Q14DG7|TMEM132B nc|ENSG00000139364|Q14DG7|TMEM132B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 470.2757873535156 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 137.56 1 137.56 137.06 138.06 0 0 0 0 0.22594 1 27288 27288 2.643 1.188 1 47720 4245 31788 31808 46903 46903 0.06206098859604481 TVWCCRASR 9 Unmodified _TVWCCRASR_ 0 0 0 PIP5K1A|p.L296Wfs*25|1|0.38|ENSG00000143398|chr1:151234438-151234438|T/-|frameshift_variant PIP5K1A|p.L296Wfs*25|1|0.38|ENSG00000143398|chr1:151234438-151234438|T/-|frameshift_variant PIP5K1A|p.L296Wfs*25|1|0.38|ENSG00000143398|chr1:151234438-151234438|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2630615234375 2 541.255128 1080.4957 0.18021 9.754E-05 1.5111 0.00081786 1.6913 0.0009154 541.255908886364 147.37 0.95261 142.22 141.78 142.73 -5.1558 57 26 3 0 0 0 0.69259 1 28600 28600 6.7232 0.51738 1 9182500 47721 12791 31789 31809 46904 46904 -0.0413247838901043 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.19134521484375 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 79.203 1 79.203 78.703 79.703 0 0 0 0 0.21486 1 15411 15411 3.9444 1.2092 1 + 47722 24355 31790 31810 46905 46905 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1769714355469 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 80.415 1 80.415 79.915 80.915 0 0 0 0 0.21486 1 15656 15656 3.5965 1.098 1 + 47723 24355 31790 31810 46906 46906 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1703186035156 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 94.385 1 94.385 93.885 94.885 0 0 0 0 0.21486 1 18484 18484 1.4819 0.41044 1 + 47724 24355 31790 31810 46907 46907 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1704406738281 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 107.09 1 107.09 106.59 107.59 0 0 0 0 0.21486 1 21057 21057 3.5965 0.31518 1 + 47725 24355 31790 31810 46908 46908 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1710205078125 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 120.01 1 120.01 119.51 120.51 0 0 0 0 0.21486 1 23652 23652 1.4819 0.41044 1 + 47726 24355 31790 31810 46909 46909 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1701965332031 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 83.149 1 79.541 79.041 80.041 -3.6079 0 0 0 0.21486 1 16253 16253 1.4819 0.51963 1 + 47727 24355 31790 31810 46910 46910 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1554870605469 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 85.023 1 81.359 80.859 81.859 -3.6641 0 0 0 0.21486 1 16622 16622 1.6526 0.58116 1 + 47728 24355 31790 31810 46911 46911 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.180419921875 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 85.073 1 81.409 80.909 81.909 -3.6641 0 0 0 0.21486 1 16632 16632 1.6526 0.58116 1 + 47729 24355 31790 31810 46912 46912 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.19091796875 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 108.02 1 103.7 103.2 104.2 -4.32 0 0 0 0.21486 1 21280 21280 1.4819 0.51963 1 + 47730 24355 31790 31810 46913 46913 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.18017578125 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 123.83 1 119.26 118.76 119.76 -4.5757 0 0 0 0.21486 1 24414 24414 1.4819 0.41044 1 + 47731 24355 31790 31810 46914 46914 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.179931640625 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 96.673 1 92.438 91.938 92.938 -4.2348 0 0 0 0.21486 1 18460 18460 3.5965 0.8613 1 + 47732 24355 31790 31810 46915 46915 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.17816162109375 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 157.44 1 152.16 151.66 152.66 -5.2854 0 0 0 0.21486 1 30553 30553 3.5965 1.098 1 + 47733 24355 31790 31810 46916 46916 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.2320556640625 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 95.612 1 91.731 91.231 92.231 -3.881 0 0 0 0.21486 1 18346 18346 3.5965 0.8613 1 + 47734 24355 31790 31810 46917 46917 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.19134521484375 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 99.166 1 95.21 94.71 95.71 -3.9564 0 0 0 0.21486 1 19038 19038 3.5965 0.8613 1 + 47735 24355 31790 31810 46918 46918 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1703186035156 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 116.34 1 111.99 111.49 112.49 -4.3585 0 0 0 0.21486 1 22398 22398 3.9444 1.2092 1 + 47736 24355 31790 31810 46919 46919 0.04390972902854173 TVWELKAP 8 Unmodified _TVWELKAP_ 0 0 0 REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant REV__NEURL4|p.E1541K|1|0.27|ENSG00000215041|chr17:7316191-7316191|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1789855957031 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 123.43 1 118.83 118.33 119.33 -4.5926 0 0 0 0.21486 1 23762 23762 3.9444 1.2092 1 + 47737 24355 31790 31810 46920 46920 0.04390972902854173 TVWLVLWVA 9 Unmodified _TVWLVLWVA_ 0 0 0 REV__ENST00000476571.1_1_6:124443035-124712010:+|nuORF REV__ENST00000476571.1_1_6:124443035-124712010:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7864990234375 2 543.820953 1085.62735 NaN NaN NaN NaN NaN NaN NaN 160.84 1 156.04 155.54 156.54 -4.7952 0 0 0 0.19684 1 31984 31984 0.12781 0 1 + 47738 19155 31791 31811 46921 46921 0.08796398242020587 TVWLVQTRPP 10 Unmodified _TVWLVQTRPP_ 0 0 0 REV__ENST00000409419.5_1_19:40884091-40884373:+|nuORF REV__ENST00000409419.5_1_19:40884091-40884373:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 598.814697265625 2 598.842948 1195.67134 NaN NaN NaN NaN NaN NaN NaN 166.91 1 162.01 161.51 162.51 -4.8916 0 0 0 0.22559 1 32757 32757 17.113 4.5813 1 + 47739 21410 31792 31812 46922 46922 0.08133382668370359 TVYDKFIDYYL 11 Unmodified _TVYDKFIDYYL_ 0 0 0 REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1 REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2432556152344 3 480.574621 1438.70203 0.50817 0.00024422 0.14909 7.165E-05 0.65727 0.00031587 481.2424515464746 30.395 0.17488 28.278 28.154 28.329 -2.1167 9 4 3 0 0 0 0.81043 1 5499 5499 2.2527 0 1 297340 + 47740 25158 31793 31813 46923 46923 0.00023071472128322057 TVYDNCAS 8 Unmodified _TVYDNCAS_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2284851074219 2 436.676368 871.338183 0.083484 3.6455E-05 1.061 0.0004633 1.1445 0.00049975 436.67672085355656 87.334 0.69357 87.334 86.982 87.676 0 36 19 2 0 0 0 0.71273 1 17112 17112 12.532 1.7076 1 2315900 47741 3187 31794 31814 46924 46924 -0.10263279447406148 TVYERLCNP 9 Unmodified _TVYERLCNP_ 0 0 0 REV__CRB1|p.A713T|1|0.37|ENSG00000134376|chr1:197427462-197427462|G/A|missense_variant REV__CRB1|p.A713T|1|0.37|ENSG00000134376|chr1:197427462-197427462|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7674560546875 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 144.84 1 139.9 139.4 140.4 -4.9445 0 0 0 0.22962 1 27987 27987 14.838 2.3067 1 + 47742 13577 31795 31815 46925 46925 -0.020390912968423436 TVYFGVVFY 9 Unmodified _TVYFGVVFY_ 0 0 0 ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21;ENST00000554178.1_1_14:88978906-89016761:-|nuORF;ENST00000554628.5_1_14:88959357-89016761:-|nuORF;PTPN21|p.I849Lfs*9|1|0.43|ENSG00000070778|chr14:88473769-88473769|T/-|frameshift_variant ENST00000554270.5_1_14:88936247-89016761:-|nuORF ENST00000554270.5_1_14:88936247-89016761:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7786254882812 2 547.781493 1093.54843 NaN NaN NaN NaN NaN NaN NaN 130.73 1 125.89 125.39 126.39 -4.8355 0 0 0 0.23508 1 25099 25099 8.5933 0 1 47743 1437 31796 31816 46926 46926 0.005401262171062626 TVYIQHVLM 9 Unmodified _TVYIQHVLM_ 0 0 0 ENST00000267522.7_1_14:64066377-64066479:-|nuORF ENST00000267522.7_1_14:64066377-64066479:-|nuORF ENST00000267522.7_1_14:64066377-64066479:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 552.3001098632812 2 552.299527 1102.5845 NaN NaN NaN NaN NaN NaN NaN 151.3 1 146.54 146.04 147.04 -4.7523 0 0 0 0.19711 1 30058 30058 0.37959 0 1 47744 8384 31797 31817 46927 46927 0.03731260122299318 TVYLQPTPNPM 11 Unmodified _TVYLQPTPNPM_ 0 0 0 ENSG00000197309|ENST00000641351|OR10D3 ENSG00000197309|ENST00000641351|OR10D3 ENSG00000197309|ENST00000641351|OR10D3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7654418945312 2 630.818281 1259.62201 NaN NaN NaN NaN NaN NaN NaN 163.42 1 158.37 157.87 158.87 -5.0446 0 0 0 0.22595 1 31801 31801 11.495 0 1 47745 7352 31798 31818 46928 46928 0.002583065972658005 TVYQDDFEY 9 Unmodified _TVYQDDFEY_ 0 0 0 REV__ENSG00000136878|ENST00000372429|USP20 REV__ENSG00000136878|ENST00000372429|USP20 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2593383789062 2 590.245669 1178.47678 NaN NaN NaN NaN NaN NaN NaN 136.47 1 131.64 131.14 132.14 -4.8307 0 0 0 0.23508 1 26279 26279 4.756 0.81161 1 + 47746 16359 31799 31819 46929 46929 -0.1053145799808135 TVYQNQIVE 9 Unmodified _TVYQNQIVE_ 0 0 0 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;ENST00000493008.1_1_10:32096588-32098081:-|nuORF nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.781005859375 2 547.279846 1092.54514 -0.051191 -2.8016E-05 0.86261 0.00047209 0.81142 0.00044408 547.2798463462236 111.75 0.38236 107.26 106.93 107.31 -4.4915 11 10 2 0 0 0 0.46882 1 21417 21417 21.537 1.0834 1 1195600 47747 5618 31800 31820 46930 46930 0.002568313724395921 TVYSVRQKAK 10 Unmodified _TVYSVRQKAK_ 0 0 0 REV__ENSG00000115423|ENST00000389394|DNAH6;REV__ENST00000494025.1_1_2:84744950-84775489:+|nuORF REV__ENSG00000115423|ENST00000389394|DNAH6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2711791992188 2 590.345855 1178.67716 0.65524 0.00038682 -0.10945 -6.461E-05 0.54579 0.00032221 590.8475802297546 103.65 0.41994 99.594 99.382 99.802 -4.0543 13 11 2 0 0 0 0.744 1 19912 19912 6.7232 0 1 528410 + 47748 15430;22109 31801 31821 46931 46931 0.09496481180030969 TWAMLAIFI 9 Unmodified _TWAMLAIFI_ 0 0 0 ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.277099609375 2 533.293714 1064.57287 NaN NaN NaN NaN NaN NaN NaN 25.295 1 23.646 23.146 24.146 -1.6482 0 0 0 0.19687 1 4436 4436 8.1555 0 1 47749 4139 31802 31822 46932 46932 0.04317063098960716 TWDDSFEGEY 10 Unmodified _TWDDSFEGEY_ 0 0 0 REV__ENST00000482891.5_1_2:202587756-202633608:-|nuORF REV__ENST00000482891.5_1_2:202587756-202633608:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 416.8292236328125 3 416.827897 1247.46186 NaN NaN NaN NaN NaN NaN NaN 102.78 1 98.598 98.098 99.098 -4.1861 0 0 0 2.8426 1 20204 20204 0.20733 0.14346 1 + 47750 13827 31803 31823 46933 46933 -0.15196949866071918 TWEHAGRYRCY 11 Unmodified _TWEHAGRYRCY_ 0 0 0 nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000104972|Q8NHL6-5|LILRB1 nc|ENSG00000104972|Q8NHL6|LILRB1 nc|ENSG00000104972|Q8NHL6|LILRB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24462890625 3 481.219177 1440.6357 NaN NaN NaN NaN NaN NaN NaN 82.663 1 82.663 82.163 83.163 0 0 0 0 0.22632 1 16110 16110 0.58532 0.47428 1 47751 12270 31804 31824 46934 46934 -0.0669902285092121 TWELRVTG 8 Unmodified _TWELRVTG_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7756042480469 2 481.258717 960.50288 0.031771 1.529E-05 -0.33799 -0.00016266 -0.30622 -0.00014737 481.25859162965077 29.587 0.34803 29.587 29.434 29.782 0 16 9 3 0 0 0 0.98676 1 5260 5260 15.847 1.0089 1 1183400 + 47752 17662 31805 31825 46935 46935 0.02104900754704886 TWFTFRWLQRE 11 Unmodified _TWFTFRWLQRE_ 0 0 0 nc|ENSG00000197122|P12931-3|SRC nc|ENSG00000197122|P12931-3|SRC nc|ENSG00000197122|P12931-3|SRC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.403564453125 2 785.401692 1568.78883 NaN NaN NaN NaN NaN NaN NaN 127.21 1 122.6 122.1 123.1 -4.6172 0 0 0 0.23698 1 25086 25086 1.3295 0.13619 1 47753 12539 31806 31826 46936 46936 0.027189155371615925 TWMISVSIQQW 11 Unmodified _TWMISVSIQQW_ 0 0 0 REV__SPAG5|p.P250Lfs*21|1|0.43|ENSG00000076382|chr17:28592495-28592495|G/-|frameshift_variant REV__SPAG5|p.P250Lfs*21|1|0.43|ENSG00000076382|chr17:28592495-28592495|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23138427734375 3 460.232312 1377.67511 NaN NaN NaN NaN NaN NaN NaN 25.577 1 23.943 23.443 24.443 -1.6347 0 0 0 0.22632 1 4212 4212 0.03141 0 1 + 47754 24727 31807 31827 46937 46937 0.0013768437991075189 TWPRLDPLR 9 Unmodified _TWPRLDPLR_ 0 0 0 REV__TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant REV__TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 385.2098083496094 3 385.220735 1152.64038 NaN NaN NaN NaN NaN NaN NaN 56.407 1 53.218 52.718 53.718 -3.1895 0 0 0 0.22823 1 10455 10455 15.248 3.0737 1 + 47755 19520 31808 31828 46938 46938 0.07016229354121606 TWQRANKL 8 Unmodified _TWQRANKL_ 0 0 0 REV__ENSG00000077152|ENST00000646651|UBE2T REV__ENSG00000077152|ENST00000646651|UBE2T MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 508.2671813964844 2 508.785433 1015.55631 -0.39714 -0.00020206 -0.81305 -0.00041367 -1.2102 -0.00061573 508.7849875391815 106.85 0.82745 102.44 102.09 102.92 -4.4121 51 23 3 0 0 0 8448 1 20540 20540 13.615 1.8656 1 7088900 + 47756 14361 31809 31829 46939 46939 0.04915698257229906 TWQRANKL 8 Unmodified _TWQRANKL_ 0 0 0 REV__ENSG00000077152|ENST00000646651|UBE2T REV__ENSG00000077152|ENST00000646651|UBE2T MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 508.785433 1015.55631 -0.47934 -0.00024388 -0.79487 -0.00040442 -1.2742 -0.0006483 508.78498588559836 106.73 0.76512 102.47 102.11 102.88 -4.2638 0.015005 8.6008E-06 NaN 13.615 60 21 4 NaN NaN NaN NaN 0 NaN NaN 0 7834400 + 47757 14361 31809 31829 0.04915698257229906 TWQRANKL 8 Unmodified _TWQRANKL_ 0 0 0 REV__ENSG00000077152|ENST00000646651|UBE2T REV__ENSG00000077152|ENST00000646651|UBE2T MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 508.785433 1015.55631 -0.39714 -0.00020206 -0.81305 -0.00041367 -1.2102 -0.00061573 508.7849875391815 106.85 0.82745 102.44 102.09 102.92 -4.4121 -0.015005 -9.8896E-06 NaN 13.615 51 23 3 NaN NaN NaN NaN 0 NaN NaN 0 7088900 + 47758 14361 31809 31829 0.04915698257229906 TWRCKVCAK 9 Unmodified _TWRCKVCAK_ 0 0 0 nc|ENSG00000102362|Q96C24-2|SYTL4;ENSG00000102362|ENST00000372989|SYTL4 nc|ENSG00000102362|Q96C24-2|SYTL4 nc|ENSG00000102362|Q96C24-2|SYTL4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7727661132812 2 547.783521 1093.55249 NaN NaN NaN NaN NaN NaN NaN 157.62 1 152.34 151.84 152.84 -5.2712 0 0 0 0.19646 1 30574 30574 0.40827 0.37898 1 47759 2128 31810 31830 46940 46940 0.009455691674929767 TWRKRRRRQLW 11 Unmodified _TWRKRRRRQLW_ 0 0 0 REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.786865234375 3 547.993953 1640.96003 NaN NaN NaN NaN NaN NaN NaN 71.043 1 71.043 70.543 71.543 0 0 0 0 0.23698 1 13758 13758 0 0 1 + 47760 22861 31811 31831 46941 46941 0.16518710419018134 TWRKRRRRQLW 11 Unmodified _TWRKRRRRQLW_ 0 0 0 REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7811279296875 3 547.993953 1640.96003 NaN NaN NaN NaN NaN NaN NaN 71.064 1 71.064 70.564 71.564 0 0 0 0 0.22632 1 13763 13763 0 0 1 + 47761 22861 31811 31831 46942 46942 0.16518710419018134 TWRKRRRRQLW 11 Unmodified _TWRKRRRRQLW_ 0 0 0 REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7811279296875 3 547.993953 1640.96003 NaN NaN NaN NaN NaN NaN NaN 71.082 1 71.082 70.582 71.582 0 0 0 0 0.23698 1 13767 13767 0 0 1 + 47762 22861 31811 31831 46943 46943 0.16518710419018134 TWRKRRRRQLW 11 Unmodified _TWRKRRRRQLW_ 0 0 0 REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7725830078125 3 547.993953 1640.96003 NaN NaN NaN NaN NaN NaN NaN 53.809 1 50.925 50.425 51.425 -2.8837 0 0 0 0.22632 1 10254 10254 0 0 1 + 47763 22861 31811 31831 46944 46944 0.16518710419018134 TWRKRRRRQLW 11 Unmodified _TWRKRRRRQLW_ 0 0 0 REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7884521484375 3 547.993953 1640.96003 NaN NaN NaN NaN NaN NaN NaN 74.946 1 71.582 71.082 72.082 -3.3643 0 0 0 0.23698 1 14626 14626 0 0 1 + 47764 22861 31811 31831 46945 46945 0.16518710419018134 TWRKRRRRQLW 11 Unmodified _TWRKRRRRQLW_ 0 0 0 REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.783447265625 3 547.993953 1640.96003 NaN NaN NaN NaN NaN NaN NaN 96.595 1 92.675 92.175 93.175 -3.9194 0 0 0 0.22632 1 18534 18534 0 0 1 + 47765 22861 31811 31831 46946 46946 0.16518710419018134 TWRRSMWRWRT 11 Unmodified _TWRRSMWRWRT_ 0 0 0 ENST00000330978.3_1_16:29465045-29465621:-|nuORF;ENST00000568556.1_3_16:29458291-29465582:-|nuORF ENST00000330978.3_1_16:29465045-29465621:-|nuORF ENST00000330978.3_1_16:29465045-29465621:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.372314453125 2 811.417685 1620.82082 NaN NaN NaN NaN NaN NaN NaN 170.67 1 170.67 170.17 171.17 0 0 0 0 0.22632 1 35106 35106 0.094841 0 1 47766 8774 31812 31832 46947 46947 0.03524004739324482 TWVLAWMHKRR 11 Unmodified _TWVLAWMHKRR_ 0 0 0 REV__ENSG00000160472|ENST00000291934|TMEM190 REV__ENSG00000160472|ENST00000291934|TMEM190 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.37646484375 2 742.408798 1482.80304 NaN NaN NaN NaN NaN NaN NaN 121.05 1 116.51 116.01 117.01 -4.5414 0 0 0 0.2367 1 23864 23864 2.9952 0 1 + 47767 17423 31813 31833 46948 46948 0.08095289484435853 TWWYRWLCRLS 11 Unmodified _TWWYRWLCRLS_ 0 0 0 ENST00000474734.5_1_9:136325188-136330196:+|nuORF;ENST00000489519.1_1_9:136325188-136330570:+|nuORF;nc|ENSG00000160325|Q9UGQ2-2|CACFD1;ENSG00000160325|ENST00000316948|CACFD1;nc|ENSG00000160325|Q9UGQ2-3|CACFD1;nc|ENSG00000160325|Q9UGQ2-4|CACFD1 ENST00000474734.5_1_9:136325188-136330196:+|nuORF ENST00000474734.5_1_9:136325188-136330196:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3944091796875 2 785.392813 1568.77107 NaN NaN NaN NaN NaN NaN NaN 121.63 1 117.08 116.58 117.58 -4.5476 0 0 0 0.22632 1 23974 23974 0 0 1 47768 5251 31814 31834 46949 46949 0.009438770106726224 TYAPEQSTPA 10 Unmodified _TYAPEQSTPA_ 0 0 0 REV__nc|ENSG00000122223|Q9BZW8-4|CD244 REV__nc|ENSG00000122223|Q9BZW8-4|CD244 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2823486328125 2 532.748379 1063.4822 -0.040955 -2.1819E-05 1.5461 0.00082369 1.5052 0.00080188 532.7491344528273 47.156 0.61968 44.206 43.948 44.568 -2.9499 25 17 2 0 0 0 0.63858 1 8644 8644 17.113 4.0704 1 2097800 + 47769 15680 31815 31835 46950 46950 -0.046997344155897736 TYAPMEEYSI 10 Unmodified _TYAPMEEYSI_ 0 0 0 REV__ZNF780B|p.K620Dfs*2|1|0.08|ENSG00000128000|chr19:40035001-40035002|-/TAATC|frameshift_variant REV__ZNF780B|p.K620Dfs*2|1|0.08|ENSG00000128000|chr19:40035001-40035002|-/TAATC|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.300537109375 2 602.265547 1202.51654 0.37837 0.00022788 1.2057 0.00072618 1.5841 0.00095406 602.2645185223809 115.77 0.209 115.77 115.63 115.84 0 6 5 2 0 0 0 0.90091 1 22768 22768 6.2058 0 1 1364900 + 47770 15911 31816 31836 46951 46951 -0.07661654319008449 TYARSANVY 9 Unmodified _TYARSANVY_ 0 0 0 ENST00000418418.1_1_17:19743579-19743825:+|nuORF ENST00000418418.1_1_17:19743579-19743825:+|nuORF ENST00000418418.1_1_17:19743579-19743825:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.263427734375 2 522.759081 1043.50361 -0.22992 -0.00012019 -1.3151 -0.00068749 -1.545 -0.00080768 522.7571712574854 44.761 0.17637 41.971 41.847 42.024 -2.79 5 4 2 0 0 0 0.81703 1 8399 8399 14.838 1.7958 1 476490 47771 9642 31817 31837 46952 46952 -0.01640304596230635 TYCLISKT 8 Unmodified _TYCLISKT_ 0 0 0 USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34 USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1646423339844 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 179.86 1 179.86 179.36 180.36 0 0 0 0 0.2396 1 37261 37261 0.30703 0 1 47772 2858 31818 31838 46953 46953 0.00691620414204408 TYDEAGGPRE 10 Unmodified _TYDEAGGPRE_ 0 0 0 ENSG00000162086|ENST00000669516|ZNF75A;ENST00000498240.6_1_16:3358428-3366938:+|nuORF ENSG00000162086|ENST00000669516|ZNF75A ENSG00000162086|ENST00000669516|ZNF75A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7814331054688 2 547.741085 1093.46762 NaN NaN NaN NaN NaN NaN NaN 115.85 1 115.85 115.35 116.35 0 0 0 0 0.22588 1 22805 22805 6.7232 0.51738 1 47773 5313 31819 31839 46954 46954 -0.07537806563755112 TYDFVSHS 8 Unmodified _TYDFVSHS_ 0 0 0 REV__ENST00000377877.4_1_9:36372514-36400652:-|nuORF REV__ENST00000377877.4_1_9:36372514-36400652:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7232971191406 2 478.211432 954.408311 0.012195 5.832E-06 0.43163 0.00020641 0.44382 0.00021224 478.2113908785907 39.399 0.62612 36.957 36.615 37.241 -2.4419 23 17 2 0 0 0 0.98792 1 7005 7005 14.582 0 1 642930 + 47774 16373 31820 31840 46955 46955 -0.07071657787275853 TYDGKELKL 9 Unmodified _TYDGKELKL_ 0 0 0 REV__ENSG00000134900|ENST00000376052|TPP2 REV__ENSG00000134900|ENST00000376052|TPP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2625122070312 2 533.792589 1065.57063 0.11057 5.902E-05 1.4988 0.00080002 1.6093 0.00085904 533.7925727726258 119.79 0.45348 119.79 119.55 120 0 18 12 3 0 0 0 0.77734 1 23634 23634 9.3831 0 1 2246300 + 47775 16236 31821 31841 46956 46956 0.04046305894826219 TYDISGKIKK 10 Unmodified _TYDISGKIKK_ 0 0 0 REV__tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1 REV__tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3369750976562 2 576.834788 1151.65502 0.22457 0.00012954 2.1788 0.0012568 2.4033 0.0013863 576.8367083521085 61.544 0.39079 58.175 58.002 58.393 -3.3694 16 10 2 0 0 0 0.89521 1 11475 11475 10.824 6.4947 1 1666300 + 47776 25059 31822 31842 46957 46957 0.08526256711616043 TYDPLQGY 8 Unmodified _TYDPLQGY_ 0 0 0 nc|ENSG00000155659|Q9Y279-3|VSIG4;nc|ENSG00000155659|Q9Y279-2|VSIG4;ENSG00000155659|ENST00000374737|VSIG4 nc|ENSG00000155659|Q9Y279-3|VSIG4 nc|ENSG00000155659|Q9Y279-3|VSIG4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7231750488281 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 39.333 1 36.784 36.284 37.284 -2.5491 0 0 0 0.17894 1 7309 7309 32.117 0 1 47777 5054 31823 31843 46958 46958 -0.050784871274800025 TYDSKLKVL 9 Unmodified _TYDSKLKVL_ 0 0 0 tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1 tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1 tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2616577148438 2 533.810782 1065.60701 0.14247 7.6051E-05 0.044473 2.374E-05 0.18694 9.9791E-05 533.8107497607449 23.482 0.45876 23.482 23.233 23.692 0 28 12 3 0 0 0 0.8319 1 4038 4038 7.9102 0 1 2213400 47778 26022 31824 31844 46959 46959 0.07683182791583931 TYDSKLKVL 9 Unmodified _TYDSKLKVL_ 0 0 0 tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1 tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1 tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2639770507812 2 533.810782 1065.60701 0.4138 0.00022089 -0.18133 -9.6797E-05 0.23247 0.00012409 533.8105654136291 25.164 0.38374 23.63 23.402 23.786 -1.5342 28 10 4 0 0 0 0.67531 1 4127 4127 7.9102 0 1 2152800 47779 26022 31824 31844 46960 46960 0.07683182791583931 TYDSKLKVL 9 Unmodified _TYDSKLKVL_ 0 0 0 tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1 tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1 tr|U7SND9|U7SND9_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01809PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.278076171875 2 533.810782 1065.60701 -0.071764 -3.8308E-05 0.29493 0.00015744 0.22317 0.00011913 533.8108395654194 25.405 0.41183 23.552 23.328 23.74 -1.8534 25 11 3 0 0 0 0.60805 1 4189 4189 12.532 0 1 1539500 47780 26022 31824 31844 46961 46961 0.07683182791583931 TYDYFEARS 9 Unmodified _TYDYFEARS_ 0 0 0 REV__ENST00000541264.2_2_14:59105725-59105827:+|nuORF REV__ENST00000541264.2_2_14:59105725-59105827:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3352661132812 2 576.253828 1150.4931 0.085474 4.9255E-05 2.0147 0.001161 2.1001 0.0012102 576.2557264180167 58.152 0.51648 54.947 54.612 55.128 -3.2052 21 14 2 0 0 0 0.80521 1 10818 10818 10.824 7.2274 1 1158400 + 47781 22864 31825 31845 46962 46962 -0.07612332041321679 TYEARVDRGH 10 Unmodified _TYEARVDRGH_ 0 0 0 REV__ENST00000377126.3_1_9:73001619-73001904:-|nuORF REV__ENST00000377126.3_1_9:73001619-73001904:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2970581054688 2 602.296893 1202.57923 NaN NaN NaN NaN NaN NaN NaN 73.937 1 70.573 70.073 71.073 -3.3643 0 0 0 0.22588 1 14418 14418 10.074 1.4806 1 + 47782 21089 31826 31846 46963 46963 -0.013953274159575813 TYEKEIQKL 9 Unmodified _TYEKEIQKL_ 0 0 0 REV__nc|ENSG00000154240|Q8N8E3-2|CEP112;REV__ENSG00000154240|ENST00000535342|CEP112 REV__ENSG00000154240|ENST00000535342|CEP112 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3204345703125 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 129.33 1 124.51 124.01 125.01 -4.817 0 0 0 0.23508 1 24827 24827 12.532 1.0368 1 + 47783 24105;17174 31827 31847 46964 46964 0.05410263957674033 TYEKFKYS 8 Unmodified _TYEKFKYS_ 0 0 0 tr|U7T556|U7T556_FUSNUTransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00445PE=4SV=1 tr|U7T556|U7T556_FUSNUTransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00445PE=4SV=1 tr|U7T556|U7T556_FUSNUTransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00445PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.26953125 2 533.266207 1064.51786 NaN NaN NaN NaN NaN NaN NaN 42.429 1 39.823 39.323 40.323 -2.606 0 0 0 0.2074 1 7631 7631 19.439 5.5329 1 47784 26451 31828 31848 46965 46965 -0.01181652167952052 TYENNFDNLD 10 Unmodified _TYENNFDNLD_ 0 0 0 ENSG00000118217|ENST00000367942|ATF6;ATF6|p.N316Ifs*17|1|0.21|ENSG00000118217|chr1:161819665-161819665|A/-|frameshift_variant ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7576904296875 2 622.756932 1243.49931 NaN NaN NaN NaN NaN NaN NaN 67.663 1 64.167 63.667 64.667 -3.4965 0 0 0 2.8426 1 12699 12699 0.063865 0 1 47785 3021 31829 31849 46966 46966 -0.11269858600462612 TYFNRSLYN 9 Unmodified _TYFNRSLYN_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2608032226562 2 589.285463 1176.55637 0.53139 0.00031314 -0.43939 -0.00025893 0.091997 5.4212E-05 589.2850544472143 107.28 0.51288 107.28 107 107.51 0 27 14 3 0 0 0 0.54354 1 21038 21038 16.942 8.1969 1 2742300 + 47786 19227 31830 31850 46967 46967 -0.02484346533401549 TYFNRSLYN 9 Unmodified _TYFNRSLYN_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 589.285463 1176.55637 0.53139 0.00031314 -0.43939 -0.00025893 0.091997 5.4212E-05 589.2850544472143 107.28 0.51288 107.28 107 107.51 0 0.0078964 -0.00013578 NaN 16.942 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2742300 + 47787 19227 31830 31850 -0.02484346533401549 TYFNRSLYN 9 Unmodified _TYFNRSLYN_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 589.285463 1176.55637 0.16261 9.5821E-05 -0.28366 -0.00016715 -0.12105 -7.1333E-05 589.2854093110321 111.78 0.60083 107.36 107.06 107.66 -4.4231 0.090027 4.7764E-05 NaN 16.942 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3553800 + 47788 19227 31830 31850 -0.02484346533401549 TYFNRSLYN 9 Unmodified _TYFNRSLYN_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.285463 1176.55637 0.32934 0.00019407 -0.18088 -0.00010659 0.14846 8.7483E-05 589.2852049247391 111.75 0.73036 107.26 106.86 107.59 -4.4915 -0.0068314 0.00016889 NaN 16.942 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 3069900 + 47789 19227 31830 31850 -0.02484346533401549 TYFNRSLYN 9 Unmodified _TYFNRSLYN_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 589.285463 1176.55637 0.61643 0.00036325 -0.41403 -0.00024398 0.20239 0.00011927 589.2851953283899 111.41 0.59088 107.18 106.94 107.53 -4.2289 -0.091092 -0.0001059 NaN 16.942 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2765500 + 47790 19227 31830 31850 -0.02484346533401549 TYGKKDKCT 9 Unmodified _TYGKKDKCT_ 0 0 0 REV__nc|ENSG00000065413|Q8N8A2-5|ANKRD44 REV__nc|ENSG00000065413|Q8N8A2-5|ANKRD44 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.264892578125 2 522.263142 1042.51173 NaN NaN NaN NaN NaN NaN NaN 28.26 1 26.264 25.764 26.764 -1.9962 0 0 0 0.22251 1 4761 4761 16.942 6.1184 1 + 47791 13063 31831 31851 46968 46968 -0.007824936711358532 TYHEASKVV 9 Unmodified _TYHEASKVV_ 0 0 0 REV__nc|ENSG00000096063|Q96SB4-3|SRPK1 REV__nc|ENSG00000096063|Q96SB4-3|SRPK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.1317138671875 3 345.181946 1032.52401 NaN NaN NaN NaN NaN NaN NaN 117.44 1 112.83 112.33 113.33 -4.6106 0 0 0 0.23508 1 22538 22538 1.0715 0 1 + 47792 23966 31832 31852 46969 46969 0.00904866063569898 TYHGNSGLL 9 Unmodified _TYHGNSGLL_ 0 0 0 TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant;TENM3|p.Y2250Mfs*4|1|0.24|ENSG00000218336|chr4:182793414-182793414|T/-|frameshift_variant;ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF;ENSG00000149256|ENST00000278550|TENM4;TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant;ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2415771484375 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 139.9 1 134.95 134.45 135.45 -4.952 0 0 0 0.19246 1 26918 26918 1.2148 0.53344 1 47793 4777;7756 31833 31853 46970 46970 -0.015319761419846145 TYISRREKFHF 11 Unmodified _TYISRREKFHF_ 0 0 0 nc|ENSG00000168491|Q8TBZ0-2|CCDC110;ENSG00000168491|ENST00000307588|CCDC110 nc|ENSG00000168491|Q8TBZ0-2|CCDC110 nc|ENSG00000168491|Q8TBZ0-2|CCDC110 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.394775390625 2 742.393867 1482.77318 NaN NaN NaN NaN NaN NaN NaN 94.228 1 90.084 89.584 90.584 -4.1435 0 0 0 0.22632 1 17973 17973 0.58532 0 1 47794 5913 31834 31854 46971 46971 0.05110629020100532 TYIVLAWISN 10 Unmodified _TYIVLAWISN_ 0 0 0 SMIM2|p.K47N|1|0.13|ENSG00000139656|chr13:44160715-44160715|C/A|missense_variant SMIM2|p.K47N|1|0.13|ENSG00000139656|chr13:44160715-44160715|C/A|missense_variant SMIM2|p.K47N|1|0.13|ENSG00000139656|chr13:44160715-44160715|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2571411132812 2 590.324057 1178.63356 NaN NaN NaN NaN NaN NaN NaN 76.963 1 76.963 76.463 77.463 0 0 0 0 2.8426 1 14959 14959 0.043787 0.043223 1 47795 25699 31835 31855 46972 46972 0.05138871682879653 TYKDIVEKV 9 Unmodified _TYKDIVEKV_ 0 0 0 REV__ENSG00000151657|ENST00000379562|KIN REV__ENSG00000151657|ENST00000379562|KIN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7901000976562 2 547.808239 1093.60193 0.17267 9.4592E-05 0.42972 0.0002354 0.60239 0.00032999 547.8084262354089 66.543 0.4527 63.435 63.129 63.582 -3.1086 20 12 2 0 0 0 0.5685 1 12888 12888 15.248 0 1 1506600 + 47796 17077 31836 31856 46973 46973 0.058868789289590495 TYKFFMNL 8 Unmodified _TYKFFMNL_ 0 0 0 REV__ENST00000526574.1_1_11:68334490-68338573:+|nuORF REV__ENST00000526574.1_1_11:68334490-68338573:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2711791992188 2 532.267696 1062.52084 -0.10517 -5.5977E-05 -0.25281 -0.00013456 -0.35798 -0.00019054 532.2676256018043 17.804 1.1087 16.493 16.136 17.245 -1.3109 76 24 5 0 0 0 0.73426 1 2925 2925 9.3474 2.0582 1 93142000 + 47797 15191 31837 31857 46974 46974 -0.00792100314788513 TYKFFMNL 8 Unmodified _TYKFFMNL_ 0 0 0 REV__ENST00000526574.1_1_11:68334490-68338573:+|nuORF REV__ENST00000526574.1_1_11:68334490-68338573:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2705688476562 2 532.267696 1062.52084 -0.052794 -2.81E-05 -0.28511 -0.00015175 -0.3379 -0.00017985 532.2676363223611 17.742 1.0959 16.47 16.144 17.24 -1.2722 78 30 5 0 0 0 0.73426 1 2692 2692 9.3474 2.0582 1 104620000 + 47798 15191 31837 31857 46975 46975 -0.00792100314788513 TYKKKIILVG 10 Unmodified _TYKKKIILVG_ 0 0 0 tr|U7SF14|U7SF14_FUSNULipopolysaccharideheptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02359PE=4SV=1 tr|U7SF14|U7SF14_FUSNULipopolysaccharideheptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02359PE=4SV=1 tr|U7SF14|U7SF14_FUSNULipopolysaccharideheptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02359PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 581.86669921875 2 581.881542 1161.74853 NaN NaN NaN NaN NaN NaN NaN 10.887 1 9.8206 9.3206 10.321 -1.0664 0 0 0 0.22588 1 1202 1202 0.45834 0.10771 1 47799 25883 31838 31858 46976 46976 0.17412600884699714 TYLRELEEK 9 Unmodified _TYLRELEEK_ 0 0 0 REV__tr|U7T3L4|U7T3L4_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00345PE=3SV=1 REV__tr|U7T3L4|U7T3L4_FUSNUPeptidyl-prolylcis-transisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00345PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.271484375 2 590.814053 1179.61355 -1.5949 -0.00094228 -0.5415 -0.00031992 -2.1364 -0.0012622 590.8137454087386 14.942 0.30573 13.731 13.583 13.889 -1.2106 26 8 4 0 0 0 0.82706 1 1997 1997 0.52476 0 1 9798300 + 47800 25367 31839 31859 46977 46977 0.03093075952278923 TYNFSINGTDL 11 Unmodified _TYNFSINGTDL_ 0 0 0 tr|U7SJL8|U7SJL8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02102PE=4SV=1 tr|U7SJL8|U7SJL8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02102PE=4SV=1 tr|U7SJL8|U7SJL8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02102PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7542114257812 2 622.793318 1243.57208 0.76399 0.00047581 -0.38112 -0.00023736 0.38287 0.00023845 622.793063342801 103.26 0.61312 103.26 102.97 103.58 0 44 17 3 0 0 0 0.46434 1 20236 20236 24.991 3.4008 1 5459100 47801 25947 31840 31860 46978 46978 -0.039961048070381366 TYNGCIECNY 10 Unmodified _TYNGCIECNY_ 0 0 0 REV__ENSG00000183431|ENST00000373019|SF3A3 REV__ENSG00000183431|ENST00000373019|SF3A3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.256591796875 2 590.225899 1178.43724 NaN NaN NaN NaN NaN NaN NaN 111.75 1 107.32 106.82 107.82 -4.4231 0 0 0 2.8426 1 22022 22022 0.84494 0 1 + 47802 18835 31841 31861 46979 46979 -0.14483624544800477 TYNVFENPYL 10 Unmodified _TYNVFENPYL_ 0 0 0 REV__SLITRK5|p.G106A|1|0.41|ENSG00000165300|chr13:87675705-87675705|G/C|missense_variant REV__SLITRK5|p.G106A|1|0.41|ENSG00000165300|chr13:87675705-87675705|G/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.760009765625 2 630.300778 1258.587 0.26658 0.00016802 0.30222 0.00019049 0.5688 0.00035851 630.3008284595785 130.74 0.5607 125.9 125.5 126.06 -4.8355 38 15 3 0 0 0 1.1138 1 25079 25079 18.122 12.253 1 4274700 + 47803 17755 31842 31862 46980 46980 -0.031946129390235 TYPEHNFLR 9 Unmodified _TYPEHNFLR_ 0 0 0 EVI5|p.F216Lfs*15|3|0.17|ENSG00000067208|chr1:92703443-92703443|A/-|frameshift_variant EVI5|p.F216Lfs*15|3|0.17|ENSG00000067208|chr1:92703443-92703443|A/-|frameshift_variant EVI5|p.F216Lfs*15|3|0.17|ENSG00000067208|chr1:92703443-92703443|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2680053710938 2 588.793455 1175.57236 0.36182 0.00021304 -1.2696 -0.00074755 -0.9078 -0.00053451 588.7926555189156 71.239 0.56326 67.772 67.414 67.978 -3.467 36 15 3 0 0 0 0.57447 1 13499 13499 14.838 1.7958 1 4328900 47804 11787 31843 31863 46981 46981 -0.008406402965420057 TYPEHNFLR 9 Unmodified _TYPEHNFLR_ 0 0 0 EVI5|p.F216Lfs*15|3|0.17|ENSG00000067208|chr1:92703443-92703443|A/-|frameshift_variant EVI5|p.F216Lfs*15|3|0.17|ENSG00000067208|chr1:92703443-92703443|A/-|frameshift_variant EVI5|p.F216Lfs*15|3|0.17|ENSG00000067208|chr1:92703443-92703443|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 588.793455 1175.57236 0.010537 6.204E-06 -0.90981 -0.00053569 -0.89927 -0.00052949 588.7928356969362 67.549 0.49262 67.549 67.262 67.755 0 -0.1527 0.00026101 NaN 14.838 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3843200 47805 11787 31843 31863 -0.008406402965420057 TYPEHNFLR 9 Unmodified _TYPEHNFLR_ 0 0 0 EVI5|p.F216Lfs*15|3|0.17|ENSG00000067208|chr1:92703443-92703443|A/-|frameshift_variant EVI5|p.F216Lfs*15|3|0.17|ENSG00000067208|chr1:92703443-92703443|A/-|frameshift_variant EVI5|p.F216Lfs*15|3|0.17|ENSG00000067208|chr1:92703443-92703443|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 588.793455 1175.57236 0.28683 0.00016888 -1.0634 -0.00062612 -0.77656 -0.00045723 588.7927593897075 71.008 0.53351 67.758 67.46 67.994 -3.2492 0.056797 8.0161E-05 NaN 14.838 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 6915900 47806 11787 31843 31863 -0.008406402965420057 TYPEHNFLR 9 Unmodified _TYPEHNFLR_ 0 0 0 EVI5|p.F216Lfs*15|3|0.17|ENSG00000067208|chr1:92703443-92703443|A/-|frameshift_variant EVI5|p.F216Lfs*15|3|0.17|ENSG00000067208|chr1:92703443-92703443|A/-|frameshift_variant EVI5|p.F216Lfs*15|3|0.17|ENSG00000067208|chr1:92703443-92703443|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 588.793455 1175.57236 0.72444 0.00042655 -1.2575 -0.00074039 -0.53303 -0.00031384 588.792583896565 71.307 0.63255 67.727 67.298 67.93 -3.5798 0.025313 -0.00014839 NaN 14.838 41 17 4 NaN NaN NaN NaN 0 NaN NaN 0 4018400 47807 11787 31843 31863 -0.008406402965420057 TYPRFSSV 8 Unmodified _TYPRFSSV_ 0 0 0 REV__KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant REV__KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7232360839844 2 478.745442 955.476331 -0.20813 -9.964E-05 0.4613 0.00022085 0.25318 0.00012121 478.7456310554386 40.696 0.98144 38.061 37.798 38.78 -2.6348 53 27 3 0 0 0 0.66265 1 7719 7719 18.135 3.5533 1 14395000 + 47808 15705 31844 31864 46982 46982 -0.003187881366102374 TYQEFEEAY 9 Unmodified _TYQEFEEAY_ 0 0 0 nc|ENSG00000259384|P01241-4|GH1;nc|ENSG00000259384|P01241-3|GH1;ENSG00000259384|ENST00000323322|GH1;ENSG00000136487|ENST00000423893|GH2;nc|ENSG00000136487|P01242-4|GH2;nc|ENSG00000136487|P01242-2|GH2 nc|ENSG00000259384|P01241-4|GH1 nc|ENSG00000259384|P01241-4|GH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.247802734375 2 590.245669 1178.47678 NaN NaN NaN NaN NaN NaN NaN 63.078 1 63.078 62.578 63.578 0 0 0 0 0.23508 1 12121 12121 8.5933 0 1 47809 4014 31845 31865 46983 46983 -0.1053145799808135 TYQYESWRCVT 11 Unmodified _TYQYESWRCVT_ 0 0 0 INSRR|p.P883Lfs*74|1|0.27|ENSG00000027644|chr1:156844551-156844551|G/-|frameshift_variant;INSRR|p.L920Cfs*37|2|0.34|ENSG00000027644|chr1:156844261-156844261|C/-|frameshift_variant;ENSG00000027644|ENST00000368195|INSRR;INSRR|p.T379Rfs*91|1|0.17|ENSG00000027644|chr1:156851382-156851383|AG/-|frameshift_variant;INSRR|p.R554Pfs*28|1|0.48|ENSG00000027644|chr1:156846664-156846668|GGTGC/-|frameshift_variant INSRR|p.P883Lfs*74|1|0.27|ENSG00000027644|chr1:156844551-156844551|G/-|frameshift_variant INSRR|p.P883Lfs*74|1|0.27|ENSG00000027644|chr1:156844551-156844551|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7396545410156 3 479.21521 1434.6238 NaN NaN NaN NaN NaN NaN NaN 109.57 1 109.57 109.07 110.07 0 0 0 0 0.22632 1 21543 21543 0.03141 0.0052036 1 47810 1146 31846 31866 46984 46984 -0.0761268438479874 TYRCAWCWMY 10 Unmodified _TYRCAWCWMY_ 0 0 0 REV__THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|39|3|sense REV__THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|39|3|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5224304199219 3 461.520811 1381.5406 NaN NaN NaN NaN NaN NaN NaN 92.531 1 88.436 87.936 88.936 -4.0946 0 0 0 0.22588 1 17628 17628 1.9064 0.1641 1 + 47811 24795 31847 31867 46985 46985 -0.13490415638011655 TYRTGVPLH 9 Unmodified _TYRTGVPLH_ 0 0 0 REV__ENSG00000188897|ENST00000696174|unknown REV__ENSG00000188897|ENST00000696174|unknown MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2669067382812 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 119.73 1 119.73 119.23 120.23 0 0 0 0 0.19669 1 23595 23595 0.12781 0 1 + 47812 19178 31848 31868 46986 46986 0.03640278537386621 TYSIYEFDKLD 11 Unmodified _TYSIYEFDKLD_ 0 0 0 REV__tr|U7T6N5|U7T6N5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00309PE=4SV=1 REV__tr|U7T6N5|U7T6N5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00309PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2455139160156 3 465.222247 1392.64491 NaN NaN NaN NaN NaN NaN NaN 48.72 1 48.72 48.22 49.22 0 0 0 0 0.22632 1 9203 9203 0.172 0 1 + 47813 25450 31849 31869 46987 46987 -0.035703958042859085 TYSVLTDGAN 10 Unmodified _TYSVLTDGAN_ 0 0 0 WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2801513671875 2 520.748379 1039.4822 0.42407 0.00022083 -0.57852 -0.00030126 -0.15445 -8.0431E-05 520.7480758327134 28.796 1.777 26.8 26.273 28.05 -1.9962 121 50 4 0 0 0 0.57735 1 4828 4828 20.454 3.3407 1 78165000 47814 6172 31850 31870 46988 46988 -0.03595734415603147 TYSVLTDGAN 10 Unmodified _TYSVLTDGAN_ 0 0 0 WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 520.748379 1039.4822 0.26567 0.00013835 -0.30454 -0.00015859 -0.038864 -2.0238E-05 520.74820018466 26.956 1.3047 26.956 26.601 27.905 0 0.099657 0.000166 NaN 20.454 100 37 4 NaN NaN NaN NaN 0 NaN NaN 0 85013000 47815 6172 31850 31870 -0.03595734415603147 TYSVLTDGAN 10 Unmodified _TYSVLTDGAN_ 0 0 0 WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 520.748379 1039.4822 0.49748 0.00025906 -0.67171 -0.00034979 -0.17422 -9.0727E-05 520.7480287074188 28.769 1.4307 26.812 26.364 27.795 -1.9561 -0.043468 -0.00021641 NaN 20.454 101 40 4 NaN NaN NaN NaN 0 NaN NaN 0 83696000 47816 6172 31850 31870 -0.03595734415603147 TYSVLTDGAN 10 Unmodified _TYSVLTDGAN_ 0 0 0 WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 520.748379 1039.4822 0.42407 0.00022083 -0.57852 -0.00030126 -0.15445 -8.0431E-05 520.7480758327134 28.796 1.777 26.8 26.273 28.05 -1.9962 -0.056189 -0.00011935 NaN 20.454 121 50 4 NaN NaN NaN NaN 0 NaN NaN 0 78165000 47817 6172 31850 31870 -0.03595734415603147 TYSWRAPE 8 Unmodified _TYSWRAPE_ 0 0 0 REV__ENST00000462685.1_1_2:74173872-74185284:+|nuORF REV__ENST00000462685.1_1_2:74173872-74185284:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.23284912109375 3 337.162775 1008.46649 NaN NaN NaN NaN NaN NaN NaN 71.919 1 68.608 68.108 69.108 -3.3107 0 0 0 0.21486 1 14011 14011 1.6526 0.45928 1 + 47818 15395 31851 31871 46989 46989 -0.03739976142003343 TYTYPWVY 8 Unmodified _TYTYPWVY_ 0 0 0 ENST00000586547.1_1_19:12989181-12989643:-|nuORF;ENST00000588777.1_1_19:12986806-12989487:-|nuORF;nc|ENSG00000105612|O00115-2|DNASE2;ENSG00000105612|ENST00000222219|DNASE2 ENST00000586547.1_1_19:12989181-12989643:-|nuORF ENST00000586547.1_1_19:12989181-12989643:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.79052734375 2 546.755475 1091.4964 0.13007 7.1118E-05 -1.3855 -0.00075752 -1.2554 -0.00068641 546.7545521670959 70.335 0.62639 70.335 70.068 70.695 0 34 17 3 0 0 0 0.64227 2 13612 13594;13612 19.439 3.5918 1 4252900 47819 2321 31852 31872 46990;46991 46991 -0.04569037196665704 TYTYPWVY 8 Unmodified _TYTYPWVY_ 0 0 0 ENST00000586547.1_1_19:12989181-12989643:-|nuORF;ENST00000588777.1_1_19:12986806-12989487:-|nuORF;nc|ENSG00000105612|O00115-2|DNASE2;ENSG00000105612|ENST00000222219|DNASE2 ENST00000586547.1_1_19:12989181-12989643:-|nuORF ENST00000586547.1_1_19:12989181-12989643:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.755475 1091.4964 0.10226 5.591E-05 -2.0015 -0.0010943 -1.8992 -0.0010384 546.7541266237292 73.748 0.55625 70.384 70.083 70.639 -3.3643 0.01743 -0.00040825 NaN 19.439 24 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1765000 47820 2321 31852 31872 -0.04569037196665704 TYTYPWVY 8 Unmodified _TYTYPWVY_ 0 0 0 ENST00000586547.1_1_19:12989181-12989643:-|nuORF;ENST00000588777.1_1_19:12986806-12989487:-|nuORF;nc|ENSG00000105612|O00115-2|DNASE2;ENSG00000105612|ENST00000222219|DNASE2 ENST00000586547.1_1_19:12989181-12989643:-|nuORF ENST00000586547.1_1_19:12989181-12989643:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.755475 1091.4964 0.22309 0.00012197 -1.6453 -0.00089959 -1.4222 -0.00077761 546.7545682539262 74.043 0.55263 70.367 70.07 70.623 -3.6764 0.00053794 -1.8807E-05 NaN 19.439 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 782180 47821 2321 31852 31872 -0.04569037196665704 TYTYPWVY 8 Unmodified _TYTYPWVY_ 0 0 0 ENST00000586547.1_1_19:12989181-12989643:-|nuORF;ENST00000588777.1_1_19:12986806-12989487:-|nuORF;nc|ENSG00000105612|O00115-2|DNASE2;ENSG00000105612|ENST00000222219|DNASE2 ENST00000586547.1_1_19:12989181-12989643:-|nuORF ENST00000586547.1_1_19:12989181-12989643:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.755475 1091.4964 0.4536 0.00024801 -1.6041 -0.00087706 -1.1505 -0.00062905 546.7546012331829 73.974 0.76782 70.38 69.978 70.746 -3.594 0.013207 2.6249E-05 NaN 19.439 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2787300 47822 2321 31852 31872 -0.04569037196665704 TYVDRNIY 8 Unmodified _TYVDRNIY_ 0 0 0 REV__ENST00000313766.5_7:300246-300384:+|nuORF REV__ENST00000313766.5_7:300246-300384:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2615356445312 2 522.261456 1042.50836 -0.043505 -2.2721E-05 0.061394 3.2064E-05 0.01789 9.343E-06 522.2614723066043 83.044 0.75711 79.345 78.933 79.69 -3.6985 40 21 2 0 0 0 0.71876 1 15897 15897 11.64 0 1 3933500 + 47823 20507 31853 31873 46992 46992 -0.011194204534604069 TYVWCHSQQ 9 Unmodified _TYVWCHSQQ_ 0 0 0 REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|9|1|sense REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.7892693935927455|0.4902543273978149|1.87|482.0|9|1|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3386840820312 2 576.250566 1150.48658 NaN NaN NaN NaN NaN NaN NaN 68.62 1 65.23 64.73 65.73 -3.3903 0 0 0 0.23508 1 12958 12958 7.9102 0 1 + 47824 23746 31854 31874 46993 46993 -0.08264548473698596 TYYKGPSL 8 Unmodified _TYYKGPSL_ 0 0 0 REV__nc|ENSG00000211699|P03979|TRGV3 REV__nc|ENSG00000211699|P03979|TRGV3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 107.81 1 107.81 107.31 108.31 0 0 0 0 0.23626 1 21198 21198 0.12286 0 1 + 47825 24251 31855 31875 46994 46994 0.003546936318684857 TYYMIDMAS 9 Unmodified _TYYMIDMAS_ 0 0 0 REV__nc|ENSG00000100523|Q8NEL9-2|DDHD1 REV__nc|ENSG00000100523|Q8NEL9-2|DDHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.783203125 2 547.730286 1093.44602 0.10132 5.5494E-05 -0.35292 -0.00019331 -0.25161 -0.00013781 548.2337402393861 139.37 0.25441 134.42 134.31 134.57 -4.952 8 6 2 0 0 0 0.8319 1 26811 26811 4.3292 0 1 1114600 + 47826 14718 31856 31876 46995 46995 -0.09696650908335869 TYYRRRLENYY 11 Unmodified _TYYRRRLENYY_ 0 0 0 REV__ENSG00000115423|ENST00000389394|DNAH6 REV__ENSG00000115423|ENST00000389394|DNAH6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27294921875 3 532.935435 1595.78447 NaN NaN NaN NaN NaN NaN NaN 106.24 1 106.24 105.74 106.74 0 0 0 0 0.23698 1 20883 20883 0.094841 0 1 + 47827 15430 31857 31877 46996 46996 0.010414063236339643 TYYYYCTFRWR 11 Unmodified _TYYYYCTFRWR_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3661499023438 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 87.936 1 87.936 87.436 88.436 0 0 0 0 0.22632 1 17161 17161 0 0 1 + 47828 19549 31858 31878 46997 46997 -0.06716125842831389 TYYYYCTFRWR 11 Unmodified _TYYYYCTFRWR_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3662719726562 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 128.86 1 128.86 128.36 129.36 0 0 0 0 0.22632 1 25450 25450 0 0 1 + 47829 19549 31858 31878 46998 46998 -0.06716125842831389 TYYYYCTFRWR 11 Unmodified _TYYYYCTFRWR_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3660888671875 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 151.08 1 151.08 150.58 151.58 0 0 0 0 0.22632 1 30254 30254 0 0 1 + 47830 19549 31858 31878 46999 46999 -0.06716125842831389 TYYYYCTFRWR 11 Unmodified _TYYYYCTFRWR_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.365966796875 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 161.54 1 161.54 161.04 162.04 0 0 0 0 0.22632 1 32447 32447 0 0 1 + 47831 19549 31858 31878 47000 47000 -0.06716125842831389 TYYYYCTFRWR 11 Unmodified _TYYYYCTFRWR_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3682250976562 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 166.05 1 166.05 165.55 166.55 0 0 0 0 0.22632 1 33776 33776 0 0 1 + 47832 19549 31858 31878 47001 47001 -0.06716125842831389 TYYYYCTFRWR 11 Unmodified _TYYYYCTFRWR_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.365966796875 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 83.705 1 80.097 79.597 80.597 -3.6079 0 0 0 0.22632 1 16366 16366 0 0 1 + 47833 19549 31858 31878 47002 47002 -0.06716125842831389 TYYYYCTFRWR 11 Unmodified _TYYYYCTFRWR_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3685302734375 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 104.81 1 100.46 99.96 100.96 -4.346 0 0 0 0.23698 1 20082 20082 0.26902 0.26902 1 + 47834 19549 31858 31878 47003 47003 -0.06716125842831389 TYYYYCTFRWR 11 Unmodified _TYYYYCTFRWR_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3699340820312 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 161.43 1 156.27 155.77 156.77 -5.1558 0 0 0 0.23698 1 31351 31351 0.26902 0.26902 1 + 47835 19549 31858 31878 47004 47004 -0.06716125842831389 TYYYYCTFRWR 11 Unmodified _TYYYYCTFRWR_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2732543945312 3 541.246733 1620.71837 NaN NaN NaN NaN NaN NaN NaN 65.026 1 61.742 61.242 62.242 -3.2832 0 0 0 0.22632 1 12217 12217 0.094841 0.087559 1 + 47836 19549 31858 31878 47005 47005 -0.06716125842831389 TYYYYCTFRWR 11 Unmodified _TYYYYCTFRWR_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3658447265625 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 152.5 1 147.33 146.83 147.83 -5.1759 0 0 0 0.22632 1 29559 29559 0 0 1 + 47837 19549 31858 31878 47006 47006 -0.06716125842831389 TYYYYCTFRWR 11 Unmodified _TYYYYCTFRWR_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3634643554688 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 153.85 1 148.63 148.13 149.13 -5.2209 0 0 0 0.23698 1 29820 29820 0.30703 0.30703 1 + 47838 19549 31858 31878 47007 47007 -0.06716125842831389 TYYYYCTFRWR 11 Unmodified _TYYYYCTFRWR_ 0 0 0 REV__nc|ENSG00000204577|O75022|LILRB3 REV__nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3640747070312 2 811.366461 1620.71837 NaN NaN NaN NaN NaN NaN NaN 156.86 1 151.59 151.09 152.09 -5.2712 0 0 0 0.23698 1 30429 30429 0.30703 0.30703 1 + 47839 19549 31858 31878 47008 47008 -0.06716125842831389 VAAAAGGY 8 Unmodified _VAAAAGGY_ 0 0 0 REV__NUP153|p.S359Ffs*14|1|0.09|ENSG00000124789|chr6:17665380-17665381|-/TAGATAAGAAG|frameshift_variant REV__NUP153|p.S359Ffs*14|1|0.09|ENSG00000124789|chr6:17665380-17665381|-/TAGATAAGAAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.17547607421875 2 340.174121 678.33369 NaN NaN NaN NaN NaN NaN NaN 110.26 1 106.08 105.58 106.58 -4.1826 0 0 0 0.21486 1 21220 21220 2.8892 0 1 + 47840 15796 31859 31879 47009 47009 -0.018343758080050065 VAAAGEEWRY 10 Unmodified _VAAAGEEWRY_ 0 0 0 ENST00000417960.5_1_3:172468522-172468597:+|nuORF ENST00000417960.5_1_3:172468522-172468597:+|nuORF ENST00000417960.5_1_3:172468522-172468597:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3114013671875 2 576.277638 1150.54072 NaN NaN NaN NaN NaN NaN NaN 141.13 1 136.26 135.76 136.76 -4.8678 0 0 0 0.22588 1 27230 27230 12.532 5.2423 1 47841 9636 31860 31880 47010 47010 -0.02852633050474651 VAAARGAFP 9 Unmodified _VAAARGAFP_ 0 0 0 REV__ENSG00000188613|ENST00000425699|NANOS1 REV__ENSG00000188613|ENST00000425699|NANOS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 430.7059631347656 2 430.24287 858.471186 0.024091 1.0365E-05 -0.013697 -5.8931E-06 0.010393 4.4717E-06 430.2427747750501 54.411 0.59405 51.276 51.01 51.604 -3.1352 22 16 2 0 0 0 0.58066 1 10106 10106 1.2148 0 1 6781800 + 47842 19159 31861 31881 47011 47011 0.03628952791427764 VAAATATSPAT 11 Unmodified _VAAATATSPAT_ 0 0 0 REV__GATA1|p.A58V|1|0.51|ENSG00000102145|chrX:48791282-48791282|C/T|missense_variant REV__GATA1|p.A58V|1|0.51|ENSG00000102145|chrX:48791282-48791282|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2531433105469 2 480.753464 959.492375 -0.12042 -5.7895E-05 0.1536 7.3845E-05 0.033177 1.595E-05 480.7534521981586 50.706 0.55665 47.654 47.331 47.888 -3.0517 41 15 3 0 0 0 0.61937 1 9280 9280 17.113 1.8644 1 3165200 + 47843 23563 31862 31882 47012 47012 0.011008733096218748 VAAATTAAPAA 11 Unmodified _VAAATTAAPAA_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF nc|ENSG00000089157|P05388-2|RPLP0 nc|ENSG00000089157|P05388-2|RPLP0 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2306213378906 2 457.750724 913.486896 -0.67298 -0.00030806 0.75277 0.00034458 0.079798 3.6528E-05 457.75103078746685 21.758 0.89613 20.037 19.779 20.675 -1.7211 72 25 5 0 0 0 0.49237 1 3439 3439 24.021 0 1 28990000 47844 1753 31863 31883 47013 47013 0.026691945177958587 VAADADVGPI 10 Unmodified _VAADADVGPI_ 0 0 0 REV__AMPH|p.A471V|1|0.32|ENSG00000078053|chr7:38394201-38394201|G/A|missense_variant REV__AMPH|p.A471V|1|0.32|ENSG00000078053|chr7:38394201-38394201|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2459411621094 2 464.242732 926.470912 0.21079 9.7856E-05 -0.38943 -0.00018079 -0.17865 -8.2935E-05 464.24250111444337 120.01 1.761 115.49 115.08 116.84 -4.5221 93 49 3 0 0 0 0.23583 1 23699 23699 6.5879 0 1 10811000 + 47845 13041 31864 31884 47014 47014 0.004734882809088958 VAAGCCYFC 9 Unmodified _VAAGCCYFC_ 0 0 0 ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.1193542480469 3 312.785265 935.333966 -0.32886 -0.00010286 -0.17946 -5.6131E-05 -0.50832 -0.00015899 312.78517497080804 67.985 0.51501 64.877 64.697 65.212 -3.1086 19 14 2 0 0 0 0.77219 1 13209 13209 2.9952 0 1 1651300 47846 7585 31865 31885 47015 47015 -0.13628783466333516 VAAGCCYFC 9 Unmodified _VAAGCCYFC_ 0 0 0 ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 312.785265 935.333966 0.33277 0.00010408 0.078811 2.4651E-05 0.41158 0.00012873 312.7850331468144 68.472 0.14186 64.936 64.864 65.006 -3.5362 0.014231 0.00012377 NaN 2.9952 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 822340 47847 7585 31865 31885 -0.13628783466333516 VAAGCCYFC 9 Unmodified _VAAGCCYFC_ 0 0 0 ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 312.785265 935.333966 -0.35568 -0.00011125 0.046294 1.448E-05 -0.30939 -9.6772E-05 312.78523686487597 68.343 0.96413 64.953 64.669 65.633 -3.3903 0.030879 9.3254E-05 NaN 2.9952 34 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1409400 47848 7585 31865 31885 -0.13628783466333516 VAAGSDLEPG 10 Unmodified _VAAGSDLEPG_ 0 0 0 ENST00000283635.7_2_2:87016528-87018429:-|nuORF ENST00000283635.7_2_2:87016528-87018429:-|nuORF ENST00000283635.7_2_2:87016528-87018429:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2246398925781 2 458.224539 914.434526 -0.11153 -5.1107E-05 0.32918 0.00015084 0.21765 9.973E-05 458.22479740334745 41.964 0.56429 39.313 38.9 39.464 -2.651 27 15 2 0 0 0 0.26072 1 7530 7530 1.9275 0.86236 1 734300 47849 8450 31866 31886 47016 47016 -0.026113886158100286 VAAKIIPATR 10 Unmodified _VAAKIIPATR_ 0 0 0 TSHZ3|p.D489Tfs*19|1|0.23|ENSG00000121297|chr19:31278329-31278329|T/-|frameshift_variant;TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant;TSHZ3|p.A877Pfs*28|1|0.2|ENSG00000121297|chr19:31277164-31277164|C/-|frameshift_variant;TSHZ3|p.M1028Nfs*30|1|0.15|ENSG00000121297|chr19:31276710-31276711|-/T|frameshift_variant;TSHZ3|p.E1034Rfs*45|1|0.07|ENSG00000121297|chr19:31276694-31276694|G/-|frameshift_variant;ENSG00000121297|ENST00000240587|TSHZ3 TSHZ3|p.D489Tfs*19|1|0.23|ENSG00000121297|chr19:31278329-31278329|T/-|frameshift_variant TSHZ3|p.D489Tfs*19|1|0.23|ENSG00000121297|chr19:31278329-31278329|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 347.2255859375 3 347.225598 1038.65496 NaN NaN NaN NaN NaN NaN NaN 98.124 1 94.167 93.667 94.667 -3.9564 0 0 0 0.22588 1 18834 18834 0.62683 0 1 47850 3175 31867 31887 47017 47017 0.13718301502262875 VAAKRLPPK 9 Unmodified _VAAKRLPPK_ 0 0 0 REV__ENST00000484651.5_1_4:1725148-1739714:+|nuORF REV__ENST00000484651.5_1_4:1725148-1739714:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2555236816406 2 490.324194 978.633835 NaN NaN NaN NaN NaN NaN NaN 123.47 1 123.47 122.97 123.97 0 0 0 0 0.23508 1 24338 24338 4.756 2.1785 1 + 47851 13951 31868 31888 47018 47018 0.14366336193415918 VAALRASY 8 Unmodified _VAALRASY_ 0 0 0 ENST00000588329.5_1_19:13056723-13059660:+|nuORF;nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A ENST00000588329.5_1_19:13056723-13059660:+|nuORF ENST00000588329.5_1_19:13056723-13059660:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2515563964844 2 425.742702 849.470852 0.14794 6.2984E-05 0.31238 0.00013299 0.46032 0.00019598 425.74285331726406 28.592 0.21375 28.592 28.421 28.635 0 7 5 2 0 0 0 0.98792 1 5048 5048 5.2307 0 1 415290 47852 6620 31869 31889 47019 47019 0.040095330715644195 VAAPLAEEEH 10 Unmodified _VAAPLAEEEH_ 0 0 0 MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2634887695312 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 147.06 1 147.06 146.56 147.56 0 0 0 0 0.22588 1 29414 29414 11.64 4.9171 1 47853 5772 31870 31890 47020 47020 -0.015837416616705013 VAAPNKIH 8 Unmodified _VAAPNKIH_ 0 0 0 REV__ENSG00000257057|ENST00000542198|C11orf97 REV__ENSG00000257057|ENST00000542198|C11orf97 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2510070800781 2 425.250695 848.486836 0.06464 2.7488E-05 0.32653 0.00013886 0.39117 0.00016635 425.25092677641743 61.137 0.31129 57.768 57.656 57.967 -3.3694 13 8 2 0 0 0 8448 1 11419 11419 3.2813 0 1 726590 + 47854 19869 31871 31891 47021 47021 0.05653239308469438 VAAPNKIH 8 Unmodified _VAAPNKIH_ 0 0 0 REV__ENSG00000257057|ENST00000542198|C11orf97 REV__ENSG00000257057|ENST00000542198|C11orf97 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2509460449219 2 425.250695 848.486836 -0.09931 -4.2232E-05 0.63369 0.00026948 0.53438 0.00022724 425.25087954092646 60.953 0.41636 57.729 57.597 58.013 -3.2237 14 11 2 0 0 0 8448 1 11395 11395 3.2813 2.6545 1 750560 + 47855 19869 31871 31891 47022 47022 0.05653239308469438 VAAPPVPV 8 Unmodified _VAAPPVPV_ 0 0 0 REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant REV__WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2181701660156 2 375.231439 748.448326 NaN NaN NaN NaN NaN NaN NaN 26.419 1 26.419 25.919 26.919 0 0 0 0 0.2396 1 4624 4624 0.12286 0 1 + 47856 17748 31872 31892 47023 47023 0.0640393367393699 VAAPSLPG 8 Unmodified _VAAPSLPG_ 0 0 0 REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 356.0697021484375 2 356.205421 710.39629 -0.32531 -0.00011588 0.63421 0.00022591 0.3089 0.00011003 356.20556510676425 67.956 1.4116 64.847 64.353 65.765 -3.1086 86 40 3 0 0 0 1.0035 1 13348 13348 11.114 0 1 22671000 + 47857 13114 31873 31893 47024 47024 0.029507702601904384 VAAPSLPG 8 Unmodified _VAAPSLPG_ 0 0 0 REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.0746765136719 2 356.205421 710.39629 0.33598 0.00011968 -0.0061205 -2.1801E-06 0.32986 0.0001175 356.2053430663753 68.453 1.103 64.916 64.623 65.726 -3.5362 48 30 3 0 0 0 1.0035 1 12811 12811 11.114 0 1 13345000 + 47858 13114 31873 31893 47025 47025 0.029507702601904384 VAAPSLPG 8 Unmodified _VAAPSLPG_ 0 0 0 REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 356.0743408203125 2 356.205421 710.39629 -0.35541 -0.0001266 0.58311 0.00020771 0.2277 8.1107E-05 356.2055458446845 68.332 1.5242 64.942 64.319 65.844 -3.3903 89 43 3 0 0 0 1.0244 1 13075 13075 2.8892 0 1 15541000 + 47859 13114 31873 31893 47026 47026 0.029507702601904384 VAAPSLPG 8 Unmodified _VAAPSLPG_ 0 0 0 REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 356.205421 710.39629 -0.5884 -0.00020959 0.90696 0.00032306 0.31856 0.00011347 356.2056782918841 65.087 1.3858 65.087 64.716 66.102 0 0.12019 0.00011202 NaN 11.114 76 39 3 NaN NaN NaN NaN 0 NaN NaN 0 28674000 + 47860 13114 31873 31893 0.029507702601904384 VAAQYGKLES 10 Unmodified _VAAQYGKLES_ 0 0 0 nc|ENSG00000115239|Q9Y575-3|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-2|ASB3 nc|ENSG00000115239|Q9Y575-3|ASB3 nc|ENSG00000115239|Q9Y575-3|ASB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2832641601562 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 172.25 1 172.25 171.75 172.75 0 0 0 0 0.22588 1 35552 35552 10.074 0 1 47861 2834 31874 31894 47027 47027 0.02053135235018999 VAARSLLDA 9 Unmodified _VAARSLLDA_ 0 0 0 REV__OSBPL5|p.D516Mfs*10|1|0.05|ENSG00000021762|chr11:3100233-3100234|-/AT|frameshift_variant REV__OSBPL5|p.D516Mfs*10|1|0.05|ENSG00000021762|chr11:3100233-3100234|-/AT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2386169433594 2 458.266542 914.51853 -0.29015 -0.00013296 0.45621 0.00020907 0.16606 7.6102E-05 458.2666467706538 104.52 0.4396 100.31 100.03 100.47 -4.2183 20 12 2 0 0 0 0.11828 1 20580 20580 49.554 0 1 1298600 + 47862 13986 31875 31895 47028 47028 0.05785187271749237 VAARVRCRSRV 11 Unmodified _VAARVRCRSRV_ 0 0 0 REV__ENST00000485322.1_1_9:99615275-99616540:-|nuORF REV__ENST00000485322.1_1_9:99615275-99616540:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25311279296875 3 424.919173 1271.73569 -0.45056 -0.00019145 0.044508 1.8912E-05 -0.40606 -0.00017254 424.9191900865207 81.469 0.83269 77.781 77.456 78.289 -3.6879 37 23 2 0 0 0 0.81642 1 15610 15610 1.4551 0 1 1520100 + 47863 22147 31876 31896 47029 47029 0.11069259273517673 VAASKSDVSP 10 Unmodified _VAASKSDVSP_ 0 0 0 USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8;USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant;ENST00000494673.1_1_6:31243358-31244615:+|nuORF USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant;ENST00000494673.1_1_6:31243358-31244615:+|nuORF USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.255126953125 2 480.753464 959.492375 0.32238 0.00015498 -0.34984 -0.00016819 -0.027469 -1.3206E-05 480.7533178358154 47.805 0.66841 47.805 47.47 48.139 0 38 18 4 0 0 0 0.51199 1 8976 8976 24.021 1.2843 1 3267000 47864 4180;26563;10560 31877 31897 47030 47030 0.011008733096218748 VAATLQTLF 9 Unmodified _VAATLQTLF_ 0 0 0 ENSG00000279804|ENST00000624297|PRAMEF18;ENSG00000204480|ENST00000376101|PRAMEF19 ENSG00000279804|ENST00000624297|PRAMEF18 ENSG00000279804|ENST00000624297|PRAMEF18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.76959228515625 2 482.279118 962.543683 0.02779 1.3403E-05 0.26882 0.00012965 0.29661 0.00014305 482.27918930674355 160.39 0.59798 160.39 159.96 160.56 0 30 16 2 0 0 0 0.79204 1 32119 32119 11.64 1.4569 1 3862500 47865 7582 31878 31898 47031 47031 0.06091242074319325 VAAVAAPPAVP 11 Unmodified _VAAVAAPPAVP_ 0 0 0 REV__ENSG00000115457|ENST00000233809|IGFBP2 REV__ENSG00000115457|ENST00000233809|IGFBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7869873046875 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 152.72 1 147.5 147 148 -5.2209 0 0 0 0.18742 1 29600 29600 21.747 0 1 + 47866 15431 31879 31899 47032 47032 0.07734948311212975 VAAVTDRLL 9 Unmodified _VAAVTDRLL_ 0 0 0 REV__sp|P16769|UNG_HCMVAUracil-DNAglycosylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL114PE=3SV=1 REV__sp|P16769|UNG_HCMVAUracil-DNAglycosylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL114PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7411193847656 2 479.290017 956.565481 -0.088098 -4.2225E-05 -0.6906 -0.000331 -0.7787 -0.00037322 479.2895469798952 79.276 0.49416 75.6 75.339 75.833 -3.676 18 13 2 0 0 0 0.85699 1 15067 15067 2.3027 0 1 814880 + 47867 24699 31880 31900 47033 47033 0.0854604682289164 VACLAALVF 9 Unmodified _VACLAALVF_ 0 0 0 ENST00000547760.1_3_14:31897374-31926552:-|nuORF ENST00000547760.1_3_14:31897374-31926552:-|nuORF ENST00000547760.1_3_14:31897374-31926552:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7596435546875 2 453.759507 905.50446 NaN NaN NaN NaN NaN NaN NaN 87.983 1 83.988 83.488 84.488 -3.9953 0 0 0 0.23508 1 16756 16756 9.3474 0 1 47868 11146 31881 31901 47034 47034 0.047928185191153716 VACLVGRG 8 Unmodified _VACLVGRG_ 0 0 0 ENST00000309862.10_1_17:37829058-37830070:-|nuORF ENST00000309862.10_1_17:37829058-37830070:-|nuORF ENST00000309862.10_1_17:37829058-37830070:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7196044921875 2 387.718173 773.421793 NaN NaN NaN NaN NaN NaN NaN 164.89 1 160.1 159.6 160.6 -4.7898 0 0 0 0.21486 1 32981 32981 5.7604 0 1 47869 8636 31882 31902 47035 47035 0.026019215109840843 VACRCWPP 8 Unmodified _VACRCWPP_ 0 0 0 ENST00000537638.6_1_12:57881889-57881970:+|nuORF ENST00000537638.6_1_12:57881889-57881970:+|nuORF ENST00000537638.6_1_12:57881889-57881970:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.13458251953125 3 311.147414 930.420413 NaN NaN NaN NaN NaN NaN NaN 49.274 1 46.393 45.893 46.893 -2.8811 0 0 0 0.21486 1 9333 9333 1.8442 0.19162 1 47870 11040 31883 31903 47036 47036 -0.04758035849454245 VACREPQL 8 Unmodified _VACREPQL_ 0 0 0 REV__ENSG00000104147|ENST00000220514|OIP5 REV__ENSG00000104147|ENST00000220514|OIP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23785400390625 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 78.188 1 78.188 77.688 78.688 0 0 0 0 0.21452 1 15214 15214 13.508 0 1 + 47871 14907 31884 31904 47037 47037 0.003732718485366604 VACREPQL 8 Unmodified _VACREPQL_ 0 0 0 REV__ENSG00000104147|ENST00000220514|OIP5 REV__ENSG00000104147|ENST00000220514|OIP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2387390136719 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 93.578 1 93.578 93.078 94.078 0 0 0 0 0.21323 1 18314 18314 14.582 0 1 + 47872 14907 31884 31904 47038 47038 0.003732718485366604 VACREPQL 8 Unmodified _VACREPQL_ 0 0 0 REV__ENSG00000104147|ENST00000220514|OIP5 REV__ENSG00000104147|ENST00000220514|OIP5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2387390136719 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 81.905 1 78.066 77.566 78.566 -3.8392 0 0 0 0.21452 1 15554 15554 13.508 0 1 + 47873 14907 31884 31904 47039 47039 0.003732718485366604 VACREPQL 8 Unmodified _VACREPQL_ 0 0 0 REV__ENSG00000104147|ENST00000220514|OIP5 REV__ENSG00000104147|ENST00000220514|OIP5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2404479980469 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 97.355 1 93.435 92.935 93.935 -3.9194 0 0 0 0.20568 1 18682 18682 20.871 6.2895 1 + 47874 14907 31884 31904 47040 47040 0.003732718485366604 VACYPYGT 8 Unmodified _VACYPYGT_ 0 0 0 REV__VPS9D1|p.A512V|1|0.42|ENSG00000075399|chr16:89709289-89709289|G/A|missense_variant REV__VPS9D1|p.A512V|1|0.42|ENSG00000075399|chr16:89709289-89709289|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2161865234375 2 437.194196 872.37384 NaN NaN NaN NaN NaN NaN NaN 177.49 1 172.7 172.2 173.2 -4.7898 0 0 0 0.21486 1 36303 36303 0.79363 0 1 + 47875 25538 31885 31905 47041 47041 -0.0674519719974569 VADEKAIQ 8 Unmodified _VADEKAIQ_ 0 0 0 REV__ENST00000529926.1_1_11:74562081-74617298:-|nuORF REV__ENST00000529926.1_1_11:74562081-74617298:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2274475097656 2 437.23745 872.460347 -0.48297 -0.00021117 0.25513 0.00011155 -0.22784 -9.962E-05 437.23742763832746 24.221 0.31553 22.368 22.155 22.471 -1.8534 14 8 2 0 0 0 8448 1 3916 3916 0.62683 0 1 524940 + 47876 22748 31886 31906 47042 47042 0.019015056264720442 VADHRNGF 8 Unmodified _VADHRNGF_ 0 0 0 REV__ENSG00000124641|ENST00000265350|MED20 REV__ENSG00000124641|ENST00000265350|MED20 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2248229980469 2 458.225208 914.435863 NaN NaN NaN NaN NaN NaN NaN 114.46 1 114.46 113.96 114.96 0 0 0 0 0.21486 1 22514 22514 10.183 3.8293 1 + 47877 15789 31887 31907 47043 47043 -0.024777097363880785 VADKFTEL 8 Unmodified _VADKFTEL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5418395996094 2 461.74765 921.480748 -0.12755 -5.8897E-05 0.45197 0.0002087 0.32442 0.0001498 461.74777285869465 85.935 1.0425 82.208 81.613 82.655 -3.727 87 28 4 0 0 0 0.31943 1 16851 16851 62.573 18.166 1 12568000 47878 2320 31888 31908 47044 47044 0.01686676286283273 VADKFTEL 8 Unmodified _VADKFTEL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 461.74765 921.480748 0.434 0.0002004 -0.084852 -3.918E-05 0.34915 0.00016122 461.7475068804064 82.397 0.98706 82.397 81.818 82.806 0 0.17846 -0.0002316 NaN 81.89 88 27 4 NaN NaN NaN NaN 0 NaN NaN 0 14422000 47879 2320 31888 31908 0.01686676286283273 VADKFTEL 8 Unmodified _VADKFTEL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 461.74765 921.480748 0.20348 9.3956E-05 0.086344 3.9869E-05 0.28982 0.00013382 461.7476137904184 86.065 0.98544 82.115 81.595 82.58 -3.9503 -0.10313 -7.3503E-05 NaN 81.89 90 27 4 NaN NaN NaN NaN 0 NaN NaN 0 13178000 47880 2320 31888 31908 0.01686676286283273 VADKFTEL 8 Unmodified _VADKFTEL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 461.74765 921.480748 0.057077 2.6355E-05 0.20328 9.3863E-05 0.26035 0.00012022 461.7476483505382 85.882 1.1132 82.153 81.615 82.728 -3.7289 -0.065432 3.4484E-05 NaN 81.89 99 31 4 NaN NaN NaN NaN 0 NaN NaN 0 11863000 47881 2320 31888 31908 0.01686676286283273 VADKVHLMY 9 Oxidation (M) _VADKVHLM(Oxidation (M))Y_ VADKVHLM(1)Y VADKVHLM(59)Y 0 0 1 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7844848632812 2 546.281334 1090.54812 0.10691 5.8404E-05 -0.17313 -9.458E-05 -0.066223 -3.6177E-05 546.2813263210599 57.089 3.3912 57.089 56.71 60.102 0 216 96 7 0 0 0 0.09143 3 10902 10902;10946;10995 58.679 58.679 1 214510000 47882 3166 31889 31909 47045;47046;47047 47045 46 0.006463832255803936 VADKVHLMY 9 Oxidation (M) _VADKVHLM(Oxidation (M))Y_ VADKVHLM(1)Y VADKVHLM(77)Y 0 0 1 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 364.85150146484375 3 364.523315 1090.54812 -0.52644 -0.0001919 1.0159 0.00037031 0.48944 0.00017841 364.5236211732634 60.714 2.1135 60.714 59.859 61.972 0 121 60 3 0 0 0 0.050823 1 11489 11489 76.825 58.211 1 5155600 47883 3166 31889 31909 47048 47048 46 0.006463832255803936 VADKVHLMY 9 Oxidation (M) _VADKVHLM(Oxidation (M))Y_ VADKVHLM(1)Y VADKVHLM(50)Y 0 0 1 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.783935546875 2 546.281334 1090.54812 0.17963 9.8129E-05 -0.23196 -0.00012672 -0.052329 -2.8586E-05 546.2812363046033 60.023 1.2486 57.089 56.608 57.857 -2.9333 143 35 7 0 0 0 0.11717 1 11549 11549 49.933 30.676 1 119290000 47884 3166 31889 31909 47049 47049 46 0.006463832255803936 VADKVHLMY 9 Oxidation (M) _VADKVHLM(Oxidation (M))Y_ VADKVHLM(1)Y VADKVHLM(54)Y 0 0 1 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7841796875 2 546.281334 1090.54812 0.11226 6.1328E-05 -0.062123 -3.3937E-05 0.050142 2.7392E-05 546.2813248132436 60.485 1.2966 57.171 56.622 57.918 -3.3139 140 36 7 0 0 0 0.10573 1 11264 11264 53.833 29.812 1 70636000 47885 3166 31889 31909 47050 47050 46 0.006463832255803936 VADKVHLMY 9 Oxidation (M) _VADKVHLM(Oxidation (M))Y_ VADKVHLM(1)Y VADKVHLM(50)Y 0 0 1 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7840576171875 2 546.281334 1090.54812 0.22991 0.0001256 -0.26666 -0.00014567 -0.03675 -2.0076E-05 546.2812629658943 60.262 3.5184 57.038 56.57 60.088 -3.2237 217 100 7 0 0 0 0.11717 1 11323 11323 49.933 31.787 1 111900000 47886 3166 31889 31909 47051 47051 46 0.006463832255803936 VADKVHLMY 9 Oxidation (M) _VADKVHLM(Oxidation (M))Y_ 0 0 1 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 364.523315 1090.54812 -0.20592 -7.5061E-05 0.93948 0.00034246 0.73356 0.0002674 364.5236655556337 63.568 1.9692 60.571 59.88 61.849 -2.9975 0.034347 -3.6109E-06 NaN 76.825 93 56 2 NaN NaN NaN NaN 0 NaN NaN 0 6451200 47887 3166 31889 31909 46 0.006463832255803936 VADKVHLMY 9 Oxidation (M) _VADKVHLM(Oxidation (M))Y_ 0 0 1 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 364.523315 1090.54812 0.20028 7.3008E-05 0.50567 0.00018433 0.70596 0.00025734 364.52336257695055 63.876 3.2641 60.461 59.72 62.984 -3.4158 -0.075803 -0.00047801 NaN 76.825 157 92 3 NaN NaN NaN NaN 0 NaN NaN 0 3764400 47888 3166 31889 31909 46 0.006463832255803936 VADKVHLMY 9 Oxidation (M) _VADKVHLM(Oxidation (M))Y_ 0 0 1 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 364.523315 1090.54812 -0.41738 -0.00015214 1.3364 0.00048716 0.91905 0.00033502 364.5237391524403 63.657 1.6979 60.401 59.952 61.649 -3.2567 -0.13571 0.00043048 NaN 76.825 88 48 3 NaN NaN NaN NaN 0 NaN NaN 0 5326300 47889 3166 31889 31909 46 0.006463832255803936 VADKVHLMY 9 Unmodified _VADKVHLMY_ 0 0 0 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013244628906 3 359.191677 1074.5532 -0.15859 -5.6965E-05 -0.32296 -0.00011601 -0.48156 -0.00017297 359.1918533883926 74.237 2.4285 74.237 73.807 76.236 0 220 69 6 0 0 0 0.43219 1 14373 14373 23.79 14.246 1 752180000 47890 3166 31889 31910 47052 47052 0.018906870881892246 VADKVHLMY 9 Unmodified _VADKVHLMY_ 0 0 0 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2135925292969 3 359.191677 1074.5532 0.019479 6.9965E-06 -0.45817 -0.00016457 -0.43869 -0.00015757 359.1916755545296 77.856 3.3354 74.09 73.401 76.737 -3.7664 264 94 6 0 0 0 0.35429 2 14715 14715;14881 28.495 18.951 1 473090000 47891 3166 31889 31910 47053;47054 47053 0.018906870881892246 VADKVHLMY 9 Unmodified _VADKVHLMY_ 0 0 0 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2023010253906 3 359.191677 1074.5532 -0.62302 -0.00022378 0.2483 8.9188E-05 -0.37472 -0.0001346 359.1919877261275 77.63 2.4887 73.972 73.399 75.887 -3.6588 248 70 6 0 0 0 0.43219 1 14793 14793 23.79 14.246 1 638070000 47892 3166 31889 31910 47055 47055 0.018906870881892246 VADKVHLMY 9 Unmodified _VADKVHLMY_ 0 0 0 ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25 ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.191677 1074.5532 -0.27317 -9.8121E-05 -0.21311 -7.6547E-05 -0.48628 -0.00017467 359.19186307693167 77.407 2.5813 73.943 73.374 75.955 -3.4633 -0.11697 -2.7041E-05 NaN 28.495 245 72 7 NaN NaN NaN NaN 0 NaN NaN 0 660960000 47893 3166 31889 31910 0.018906870881892246 VADLIKFK 8 Unmodified _VADLIKFK_ 0 0 0 REV__ENST00000590977.5_1_17:42929843-42931004:-|nuORF REV__ENST00000590977.5_1_17:42929843-42931004:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 467.29071044921875 2 467.292028 932.569503 NaN NaN NaN NaN NaN NaN NaN 158.28 1 153.01 152.51 153.51 -5.2712 0 0 0 0.23664 1 30713 30713 3.2813 0 1 + 47894 15145 31890 31911 47056 47056 0.10052136316608085 VADMALHY 8 Unmodified _VADMALHY_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF;nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23077392578125 2 460.220746 918.426938 -0.14283 -6.5733E-05 -0.31368 -0.00014436 -0.45651 -0.0002101 460.2205691780638 86.397 0.5017 82.67 82.404 82.906 -3.727 26 13 2 0 0 0 0.16877 1 16907 16907 75.128 35.171 1 2821500 47895 5083 31891 31912 47057 47057 -0.03553819417095383 VADMALHY 8 Unmodified _VADMALHY_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF;nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2301330566406 2 460.220746 918.426938 0.22537 0.00010372 -0.82214 -0.00037837 -0.59677 -0.00027465 460.22006479541545 86.528 0.59686 82.578 82.261 82.858 -3.9503 26 16 2 0 0 0 0.16877 1 16515 16515 75.128 48.787 1 1802100 47896 5083 31891 31912 47058 47058 -0.03553819417095383 VADMALHY 8 Unmodified _VADMALHY_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF;nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2431335449219 2 460.220746 918.426938 0.078979 3.6348E-05 -0.70279 -0.00032344 -0.62381 -0.00028709 460.2202596919166 86.314 0.59977 82.585 82.31 82.909 -3.7289 25 16 2 0 0 0 0.3708 1 16494 16494 52.693 31.822 1 1431500 47897 5083 31891 31912 47059 47059 -0.03553819417095383 VADMALHY 8 Unmodified _VADMALHY_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF;nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.220746 918.426938 0.45172 0.00020789 -0.66369 -0.00030544 -0.21197 -9.7552E-05 460.2203926942037 82.608 0.44272 82.608 82.291 82.734 0 -0.0022402 -5.9732E-05 NaN 75.128 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1541900 47898 5083 31891 31912 -0.03553819417095383 VADPRTVY 8 Unmodified _VADPRTVY_ 0 0 0 REV__ENST00000349606.4_1_6:16129553-16141990:+|nuORF REV__ENST00000349606.4_1_6:16129553-16141990:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2492980957031 2 460.745442 919.476331 0.0037962 1.7491E-06 0.68385 0.00031508 0.68765 0.00031683 460.7455964897925 52.966 1.1531 49.878 49.168 50.321 -3.0876 86 32 5 0 0 0 0.21172 1 9731 9731 62.573 0 1 24435000 + 47899 13894 31892 31913 47060 47060 0.013372118633697028 VADPRTVY 8 Unmodified _VADPRTVY_ 0 0 0 REV__ENST00000349606.4_1_6:16129553-16141990:+|nuORF REV__ENST00000349606.4_1_6:16129553-16141990:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2303771972656 2 460.745442 919.476331 -0.051732 -2.3835E-05 0.71355 0.00032876 0.66182 0.00030493 460.7456022609397 52.909 0.93493 49.813 49.304 50.239 -3.0954 80 26 5 0 0 0 0.21172 1 9781 9781 53.833 15.859 1 17497000 + 47900 13894 31892 31913 47061 47061 0.013372118633697028 VADRLNEC 8 Unmodified _VADRLNEC_ 0 0 0 REV__tr|U7T4S8|U7T4S8_FUSNUUDP-N-acetylmuramate--L-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murCPE=3SV=1 REV__tr|U7T4S8|U7T4S8_FUSNUUDP-N-acetylmuramate--L-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2355651855469 2 460.218734 918.422915 NaN NaN NaN NaN NaN NaN NaN 55.153 1 55.153 54.653 55.653 0 0 0 0 0.21039 1 10523 10523 16.942 0 1 + 47901 25393 31893 31914 47062 47062 -0.03955908910791095 VADRSDWL 8 Unmodified _VADRSDWL_ 0 0 0 REV__ENST00000438934.5_2_22:18979470-18980127:+|nuORF REV__ENST00000438934.5_2_22:18979470-18980127:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2405700683594 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 150.82 1 145.6 145.1 146.1 -5.2169 0 0 0 0.21323 1 29227 29227 14.582 0 1 + 47902 21689 31894 31915 47063 47063 -0.015319761420073519 VADTRQAMCSY 11 Unmodified _VADTRQAMCSY_ 0 0 0 REV__ENSG00000197417|ENST00000225519|SHPK REV__ENSG00000197417|ENST00000225519|SHPK MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.770751953125 2 622.773548 1243.53254 NaN NaN NaN NaN NaN NaN NaN 42.409 1 39.69 39.19 40.19 -2.7191 0 0 0 0.2367 1 7933 7933 2.9952 0.69251 1 + 47903 19334 31895 31916 47064 47064 -0.07948271353757264 VADVHRTL 8 Unmodified _VADVHRTL_ 0 0 0 FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant;ENSG00000165140|ENST00000375326|FBP1;ENSG00000130957|ENST00000375337|FBP2 FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant FBP1|p.G294Efs*11|1|0.11|ENSG00000165140|chr9:94603517-94603517|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.1755065917969 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 102.2 1 97.874 97.374 98.374 -4.3208 0 0 0 0.21486 1 19565 19565 1.6526 0.17072 1 47904 3653 31896 31917 47065 47065 0.044843204745689036 VADYTDRFR 9 Unmodified _VADYTDRFR_ 0 0 0 REV__SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant REV__SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20953369140625 3 381.524484 1141.55162 -0.28185 -0.00010753 0.67592 0.00025788 0.39406 0.00015034 381.85915636172945 47.469 0.20864 44.6 44.426 44.635 -2.869 9 5 2 0 0 0 0.87497 1 8934 8934 2.4985 0 1 531550 + 47905 19475 31897 31918 47066 47066 -0.013492306761918371 VAEASVRELL 10 Unmodified _VAEASVRELL_ 0 0 0 REV__nc|ENSG00000176248|Q9UJX6-2|ANAPC2 REV__nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7708129882812 2 543.811313 1085.60807 0.25077 0.00013637 -0.1826 -9.93E-05 0.068169 3.7071E-05 543.8111349301619 138.75 0.67303 134.11 133.81 134.48 -4.6439 30 18 2 0 0 0 0.26497 1 27362 27362 39.95 0 1 3946000 + 47906 18504 31898 31919 47067 47067 0.06869397160471635 VAEASWFC 8 Unmodified _VAEASWFC_ 0 0 0 ENST00000452673.6_1_5:179125947-179126001:+|nuORF ENST00000452673.6_1_5:179125947-179126001:+|nuORF ENST00000452673.6_1_5:179125947-179126001:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23712158203125 2 456.699646 911.384739 -0.2152 -9.828E-05 0.010411 4.7547E-06 -0.20479 -9.3525E-05 456.69971335821543 49.493 0.94716 46.612 46.201 47.148 -2.8811 71 26 4 0 0 0 0.69085 1 9426 9426 15.768 5.5848 1 7212900 47907 9996 31899 31920 47068 47068 -0.07449794825458866 VAEASWFC 8 Unmodified _VAEASWFC_ 0 0 0 ENST00000452673.6_1_5:179125947-179126001:+|nuORF ENST00000452673.6_1_5:179125947-179126001:+|nuORF ENST00000452673.6_1_5:179125947-179126001:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 456.699646 911.384739 0.61118 0.00027913 -0.30495 -0.00013927 0.30624 0.00013986 456.6994202223787 46.607 0.87907 46.607 46.173 47.052 0 -0.029989 -0.00025838 NaN 15.768 40 24 2 NaN NaN NaN NaN 0 NaN NaN 0 3156300 47908 9996 31899 31920 -0.07449794825458866 VAEASWFC 8 Unmodified _VAEASWFC_ 0 0 0 ENST00000452673.6_1_5:179125947-179126001:+|nuORF ENST00000452673.6_1_5:179125947-179126001:+|nuORF ENST00000452673.6_1_5:179125947-179126001:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 456.699646 911.384739 -0.021426 -9.7853E-06 0.079289 3.6211E-05 0.057863 2.6426E-05 456.6996703168742 49.649 1.1242 46.65 46.278 47.402 -2.999 0.012454 9.2585E-05 NaN 15.768 85 32 4 NaN NaN NaN NaN 0 NaN NaN 0 12388000 47909 9996 31899 31920 -0.07449794825458866 VAEASWFC 8 Unmodified _VAEASWFC_ 0 0 0 ENST00000452673.6_1_5:179125947-179126001:+|nuORF ENST00000452673.6_1_5:179125947-179126001:+|nuORF ENST00000452673.6_1_5:179125947-179126001:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 456.699646 911.384739 -0.089717 -4.0974E-05 0.16934 7.7335E-05 0.079619 3.6362E-05 456.69972355094825 49.686 0.96813 46.68 46.276 47.244 -3.0068 0.042374 0.00017483 NaN 15.768 62 27 3 NaN NaN NaN NaN 0 NaN NaN 0 3199500 47910 9996 31899 31920 -0.07449794825458866 VAEDPAGA 8 Unmodified _VAEDPAGA_ 0 0 0 REV__nc|ENSG00000141556|Q9BTW9-4|TBCD REV__nc|ENSG00000141556|Q9BTW9-4|TBCD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.1817626953125 2 365.174318 728.334084 NaN NaN NaN NaN NaN NaN NaN 72.232 1 72.232 71.732 72.732 0 0 0 0 0.23294 1 14002 14002 0.12286 0 1 + 47911 24073 31900 31921 47069 47069 -0.040950008788172454 VAEEDEDD 8 Unmodified _VAEEDEDD_ 0 0 0 ENSG00000090020|ENST00000263980|SLC9A1;ENST00000374089.5_1_1:27426800-27429818:-|nuORF ENSG00000090020|ENST00000263980|SLC9A1 ENSG00000090020|ENST00000263980|SLC9A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.1694030761719 2 461.169627 920.324701 NaN NaN NaN NaN NaN NaN NaN 11.859 1 10.738 10.238 11.238 -1.1206 0 0 0 0.21486 1 1376 1376 0.79363 0 1 47912 1775 31901 31922 47070 47070 -0.13864858745660058 VAEGTGDT 8 Unmodified _VAEGTGDT_ 0 0 0 FCRL4|p.C310Y|1|0.25|ENSG00000163518|chr1:157586374-157586374|C/T|missense_variant;nc|ENSG00000163518|Q96PJ5-2|FCRL4;ENSG00000163518|ENST00000271532|FCRL4 FCRL4|p.C310Y|1|0.25|ENSG00000163518|chr1:157586374-157586374|C/T|missense_variant FCRL4|p.C310Y|1|0.25|ENSG00000163518|chr1:157586374-157586374|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21649169921875 2 375.169233 748.323913 NaN NaN NaN NaN NaN NaN NaN 131.21 1 126.37 125.87 126.87 -4.8355 0 0 0 0.23782 1 25196 25196 0.063987 0 1 47913 5436 31902 31923 47071 47071 -0.06031608604041594 VAELKWSF 8 Unmodified _VAELKWSF_ 0 0 0 REV__GPR32|p.Q329Pfs*?|1|0.16|ENSG00000142511|chr19:50771578-50771579|-/T|frameshift_variant REV__GPR32|p.Q329Pfs*?|1|0.16|ENSG00000142511|chr19:50771578-50771579|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26666259765625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 153.75 1 148.48 147.98 148.98 -5.2669 0 0 0 0.21181 1 29807 29807 15.768 1.1865 1 + 47914 23587 31903 31924 47072 47072 0.027349729028514957 VAELTDDCCLY 11 Unmodified _VAELTDDCCLY_ 0 0 0 REV__sp|P09722|US22_HCMVAEarlynuclearproteinHWLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US22PE=3SV=2 REV__sp|P09722|US22_HCMVAEarlynuclearproteinHWLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US22PE=3SV=2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.751953125 2 622.762314 1243.51008 NaN NaN NaN NaN NaN NaN NaN 81.842 1 78.154 77.654 78.654 -3.6879 0 0 0 0.23199 1 15595 15595 6.7232 0 1 + 47915 24687 31904 31925 47073 47073 -0.10193915542049581 VAEPEPCSE 9 Unmodified _VAEPEPCSE_ 0 0 0 REV__ZNF835|p.Q31E|1|0.11|ENSG00000127903|chr19:56665108-56665108|G/C|missense_variant REV__ZNF835|p.Q31E|1|0.11|ENSG00000127903|chr19:56665108-56665108|G/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2542724609375 2 480.702583 959.390612 0.30645 0.00014731 0.87638 0.00042128 1.1828 0.00056859 480.7029240296497 102.65 0.97668 98.328 97.939 98.915 -4.3208 75 27 4 0 0 0 0.49001 1 19639 19639 28.487 7.6156 1 15089000 + 47916 15902 31905 31926 47074 47074 -0.09070741104449098 VAEPEPCSE 9 Unmodified _VAEPEPCSE_ 0 0 0 REV__ZNF835|p.Q31E|1|0.11|ENSG00000127903|chr19:56665108-56665108|G/C|missense_variant REV__ZNF835|p.Q31E|1|0.11|ENSG00000127903|chr19:56665108-56665108|G/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25384521484375 2 480.702583 959.390612 0.4697 0.00022579 0.33584 0.00016144 0.80554 0.00038723 480.7026990777641 102.41 0.98615 98.384 98.009 98.995 -4.0212 70 27 4 0 0 0 0.72864 1 19696 19696 16.942 0 1 16699000 + 47917 15902 31905 31926 47075 47075 -0.09070741104449098 VAERPVSY 8 Unmodified _VAERPVSY_ 0 0 0 ZNF365|p.K208Sfs*11|1|0.19|ENSG00000138311|chr10:62376812-62376812|A/-|frameshift_variant;nc|ENSG00000138311|Q70YC5-2|ZNF365;ZNF365|p.K399Sfs*6|3|0.2|ENSG00000138311|chr10:62399754-62399754|A/-|frameshift_variant;ENSG00000138311|ENST00000395254|ZNF365;nc|ENSG00000138311|Q70YC5-4|ZNF365;nc|ENSG00000138311|Q70YC5-3|ZNF365 ZNF365|p.K208Sfs*11|1|0.19|ENSG00000138311|chr10:62376812-62376812|A/-|frameshift_variant ZNF365|p.K208Sfs*11|1|0.19|ENSG00000138311|chr10:62376812-62376812|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2315368652344 2 460.745442 919.476331 0.42554 0.00019607 0.13895 6.4022E-05 0.5645 0.00026009 460.745409745827 49.827 0.78512 49.827 49.62 50.405 0 59 22 4 0 0 0 0.14574 1 9437 9437 78.149 12.914 1 18253000 47918 4163 31906 31927 47076 47076 0.013372118633810715 VAERPVSY 8 Unmodified _VAERPVSY_ 0 0 0 ZNF365|p.K208Sfs*11|1|0.19|ENSG00000138311|chr10:62376812-62376812|A/-|frameshift_variant;nc|ENSG00000138311|Q70YC5-2|ZNF365;ZNF365|p.K399Sfs*6|3|0.2|ENSG00000138311|chr10:62399754-62399754|A/-|frameshift_variant;ENSG00000138311|ENST00000395254|ZNF365;nc|ENSG00000138311|Q70YC5-4|ZNF365;nc|ENSG00000138311|Q70YC5-3|ZNF365 ZNF365|p.K208Sfs*11|1|0.19|ENSG00000138311|chr10:62376812-62376812|A/-|frameshift_variant ZNF365|p.K208Sfs*11|1|0.19|ENSG00000138311|chr10:62376812-62376812|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23150634765625 2 460.745442 919.476331 -0.28378 -0.00013075 0.78891 0.00036349 0.50514 0.00023274 460.74565651532066 52.777 0.90609 49.893 49.272 50.178 -2.8837 76 25 5 0 0 0 0.38287 1 10014 10014 54.774 3.9185 1 24251000 47919 4163 31906 31927 47077 47077 0.013372118633810715 VAESEVVDI 9 Unmodified _VAESEVVDI_ 0 0 0 REV__ENSG00000166118|ENST00000299140|SPATA19 REV__ENSG00000166118|ENST00000299140|SPATA19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25384521484375 2 480.747847 959.481142 0.18554 8.9199E-05 -0.65316 -0.00031401 -0.46762 -0.00022481 480.74745718828655 75.841 1.9103 75.841 75.138 77.048 0 138 54 4 0 0 0 0.60805 1 14623 14623 12.532 0 1 138950000 + 47920 17825 31907 31928 47078 47078 -0.00021948784524283838 VAESKLLAPD 10 Unmodified _VAESKLLAPD_ 0 0 0 REV__ENST00000335142.5_1_14:56043911-56046785:-|nuORF REV__ENST00000335142.5_1_14:56043911-56046785:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.282470703125 2 521.792589 1041.57063 0.51478 0.00026861 0.7183 0.0003748 1.2331 0.00064341 521.792933781526 81.421 0.62294 81.421 81.127 81.75 0 46 17 3 0 0 0 0.59928 1 15822 15822 19.257 0 1 14822000 + 47921 20650 31908 31929 47079 47079 0.0515030589485832 VAESYSPVLQ 10 Unmodified _VAESYSPVLQ_ 0 0 0 REV__ENSG00000179292|ENST00000327259|TMEM151A REV__ENSG00000179292|ENST00000327259|TMEM151A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7835083007812 2 546.782222 1091.54989 -1.5298 -0.00083646 -0.82445 -0.0004508 -2.3542 -0.0012873 546.7817842131594 15.399 0.34787 14.045 13.854 14.202 -1.3534 20 9 4 0 0 0 0.744 1 2108 2108 6.7232 0 1 2684200 + 47922 18650 31909 31930 47080 47080 0.007777155151870829 VAETPDIKL 9 Unmodified _VAETPDIKL_ 0 0 0 ENSG00000083845|ENST00000196551|RPS5;ENST00000599909.1_1_19:58899504-58899627:+|nuORF;ENST00000598807.1_1_19:58899504-58905010:+|nuORF ENSG00000083845|ENST00000196551|RPS5 ENSG00000083845|ENST00000196551|RPS5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 493.7715148925781 2 493.281857 984.549162 0.04931 2.4324E-05 0.17844 8.8021E-05 0.22775 0.00011234 493.28188494883216 102.54 0.70088 98.359 97.924 98.625 -4.1861 47 19 3 0 0 0 0.066439 1 20110 20110 59.368 44.411 1 4916500 47923 1658 31910 31931 47081 47081 0.05626920866131968 VAETPDIKL 9 Unmodified _VAETPDIKL_ 0 0 0 ENSG00000083845|ENST00000196551|RPS5;ENST00000599909.1_1_19:58899504-58899627:+|nuORF;ENST00000598807.1_1_19:58899504-58905010:+|nuORF ENSG00000083845|ENST00000196551|RPS5 ENSG00000083845|ENST00000196551|RPS5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 493.281857 984.549162 0.36302 0.00017907 0.051135 2.5224E-05 0.41416 0.0002043 493.28176637391977 98.665 0.55377 98.665 98.369 98.922 0 0.22927 9.3406E-05 NaN 59.368 29 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4521400 47924 1658 31910 31931 0.05626920866131968 VAETPDIKL 9 Unmodified _VAETPDIKL_ 0 0 0 ENSG00000083845|ENST00000196551|RPS5;ENST00000599909.1_1_19:58899504-58899627:+|nuORF;ENST00000598807.1_1_19:58899504-58905010:+|nuORF ENSG00000083845|ENST00000196551|RPS5 ENSG00000083845|ENST00000196551|RPS5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 493.281857 984.549162 0.29897 0.00014748 -0.12905 -6.3656E-05 0.16992 8.382E-05 493.28168548855433 102.64 0.73093 98.323 97.939 98.67 -4.3208 -0.11296 -8.4354E-05 NaN 59.368 48 20 4 NaN NaN NaN NaN 0 NaN NaN 0 4043800 47925 1658 31910 31931 0.05626920866131968 VAETPDIKL 9 Unmodified _VAETPDIKL_ 0 0 0 ENSG00000083845|ENST00000196551|RPS5;ENST00000599909.1_1_19:58899504-58899627:+|nuORF;ENST00000598807.1_1_19:58899504-58905010:+|nuORF ENSG00000083845|ENST00000196551|RPS5 ENSG00000083845|ENST00000196551|RPS5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 493.281857 984.549162 0.31 0.00015292 -0.20448 -0.00010086 0.10552 5.2051E-05 493.28169033605775 102.42 0.65439 98.397 98.079 98.733 -4.0212 -0.039164 -0.00015877 NaN 59.368 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3692600 47926 1658 31910 31931 0.05626920866131968 VAEVVARYL 9 Unmodified _VAEVVARYL_ 0 0 0 REV__SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant REV__SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 509.9693298339844 2 510.297842 1018.58113 0.20698 0.00010562 -0.29413 -0.00015009 -0.087149 -4.4472E-05 510.2982333710814 151.4 0.66302 151.4 150.96 151.62 0 24 18 2 0 0 0 0.8204 1 30300 30300 8.5933 4.264 1 1712000 + 47927 19489 31911 31932 47082 47082 0.07258333339939327 VAFFFVLS 8 Unmodified _VAFFFVLS_ 0 0 0 REV__nc|ENSG00000180259|Q86SH4|PRNT REV__nc|ENSG00000180259|Q86SH4|PRNT MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25872802734375 2 465.260197 928.50584 NaN NaN NaN NaN NaN NaN NaN 123.57 1 118.99 118.49 119.49 -4.5757 0 0 0 0.21486 1 24359 24359 10.183 3.8293 1 + 47928 24192 31912 31933 47083 47083 0.03872775879517576 VAFHNAQS 8 Unmodified _VAFHNAQS_ 0 0 0 REV__ENSG00000165168|ENST00000378588|CYBB REV__ENSG00000165168|ENST00000378588|CYBB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2154846191406 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 103.34 1 98.996 98.496 99.496 -4.346 0 0 0 0.21486 1 19792 19792 10.824 0.64053 1 + 47929 17743 31913 31934 47084 47084 -0.027245144849530334 VAFSAPPPPP 10 Unmodified _VAFSAPPPPP_ 0 0 0 ENST00000593685.5_2_19:40321124-40324128:-|nuORF ENST00000593685.5_2_19:40321124-40324128:-|nuORF ENST00000593685.5_2_19:40321124-40324128:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2666015625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 105.94 1 101.85 101.35 102.35 -4.0913 0 0 0 2.8426 1 20377 20377 3.5927 0 1 47930 11647 31914 31935 47085 47085 0.027349729028514957 VAFSAQLPE 9 Unmodified _VAFSAQLPE_ 0 0 0 REV__CDCA2|p.V463A|1|0.07|ENSG00000184661|chr8:25485781-25485781|T/C|missense_variant REV__CDCA2|p.V463A|1|0.07|ENSG00000184661|chr8:25485781-25485781|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25396728515625 2 481.2531 960.491647 0.23899 0.00011502 -0.011537 -5.5524E-06 0.22746 0.00010946 481.25311439314635 65.101 1.3335 61.818 61.317 62.65 -3.2832 66 38 2 0 0 0 0.54076 1 12158 12158 17.113 0 1 3279000 + 47931 13342 31915 31936 47086 47086 0.009820786605587273 VAFTIPQGE 9 Unmodified _VAFTIPQGE_ 0 0 0 REV__nc|ENSG00000288520|G9CGD6-3|CNK3 REV__nc|ENSG00000288520|G9CGD6-3|CNK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25360107421875 2 481.2531 960.491647 -0.31618 -0.00015216 0.59471 0.00028621 0.27854 0.00013405 481.253289248104 62.129 1.0714 62.129 61.768 62.839 0 55 30 3 0 0 0 0.54076 1 12019 12019 17.113 0 1 4036100 + 47932 24321 31916 31937 47087 47087 0.00982078660570096 VAFTIPQGE 9 Unmodified _VAFTIPQGE_ 0 0 0 REV__nc|ENSG00000288520|G9CGD6-3|CNK3 REV__nc|ENSG00000288520|G9CGD6-3|CNK3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2533874511719 2 481.2531 960.491647 0.26363 0.00012687 0.08121 3.9083E-05 0.34484 0.00016596 481.2530308662671 65.487 0.95293 62.029 61.538 62.491 -3.4581 56 26 3 0 0 0 0.54076 1 12160 12160 17.113 0 1 3376200 + 47933 24321 31916 31937 47088 47088 0.00982078660570096 VAFYLVED 8 Unmodified _VAFYLVED_ 0 0 0 REV__nc|ENSG00000163644|Q8N3J5-3|PPM1K REV__nc|ENSG00000163644|Q8N3J5-3|PPM1K MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7443542480469 2 478.242201 954.469849 0.13633 6.5201E-05 0.80406 0.00038453 0.94039 0.00044973 478.24262055047205 152.8 0.909 147.53 147.08 147.98 -5.2669 58 25 3 0 0 0 0.59519 1 29571 29571 22.453 0.91566 1 8456800 + 47934 17596 31917 31938 47089 47089 -0.009207260880089052 VAGAGYGL 8 Unmodified _VAGAGYGL_ 0 0 0 REV__nc|ENSG00000087087|Q9BXP5-5|SRRT REV__nc|ENSG00000087087|Q9BXP5-5|SRRT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 353.8997802734375 2 354.189771 706.36499 NaN NaN NaN NaN NaN NaN NaN 111.7 1 111.7 111.2 112.2 0 0 0 0 0.23294 1 21975 21975 0.12286 0.058877 1 + 47935 14493 31918 31939 47090 47090 6.197226105086884E-05 VAGCRWES 8 Unmodified _VAGCRWES_ 0 0 0 ENST00000543131.5_1_11:114310234-114320694:+|nuORF ENST00000543131.5_1_11:114310234-114320694:+|nuORF ENST00000543131.5_1_11:114310234-114320694:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.765869140625 2 454.20817 906.401786 NaN NaN NaN NaN NaN NaN NaN 81.874 1 78.316 77.816 78.816 -3.557 0 0 0 0.21486 1 15997 15997 10.183 0.83596 1 47936 11099 31919 31940 47091 47091 -0.055158742196454114 VAGDFREEWVT 11 Unmodified _VAGDFREEWVT_ 0 0 0 ENST00000354377.7_1_15:90895613-90902094:+|nuORF;ENST00000560038.5_1_15:90895628-90902094:+|nuORF ENST00000354377.7_1_15:90895613-90902094:+|nuORF ENST00000354377.7_1_15:90895613-90902094:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21612548828125 3 436.878815 1307.61462 0.48437 0.00021161 3.4989 0.0015286 3.9832 0.0017402 437.2159252112922 108.84 1.2238 104.66 104.21 105.44 -4.1826 48 34 2 0 0 0 0.72109 1 21010 21010 10.315 1.0715 1 639180 47937 8945 31920 31941 47092 47092 -0.026887096788186682 VAGDLWNNFPA 11 Unmodified _VAGDLWNNFPA_ 0 0 0 REV__ENSG00000248746|ENST00000513398|ACTN3 REV__ENSG00000248746|ENST00000513398|ACTN3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2833251953125 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 147.37 1 147.37 146.87 147.87 0 0 0 0 0.23264 1 29478 29478 6.2058 0.97511 1 + 47938 19816 31921 31942 47093 47093 -0.021160600163966592 VAGDLWNNFPA 11 Unmodified _VAGDLWNNFPA_ 0 0 0 REV__ENSG00000248746|ENST00000513398|ACTN3 REV__ENSG00000248746|ENST00000513398|ACTN3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2909545898438 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 147.41 1 147.41 146.91 147.91 0 0 0 0 0.23264 1 29486 29486 6.2058 0.9089 1 + 47939 19816 31921 31942 47094 47094 -0.021160600163966592 VAGEDMLVE 9 Unmodified _VAGEDMLVE_ 0 0 0 REV__L1TD1|p.K234del|1|0.05|ENSG00000240563|chr1:62207326-62207328|AAA/-|inframe_deletion REV__L1TD1|p.K234del|1|0.05|ENSG00000240563|chr1:62207326-62207328|AAA/-|inframe_deletion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25067138671875 2 481.7286 961.442648 0.11805 5.6868E-05 0.18693 9.0047E-05 0.30497 0.00014691 481.728852369584 109.05 0.49149 109.05 108.7 109.19 0 16 13 2 0 0 0 0.77732 1 21397 21397 12.532 0 1 1155700 + 47940 23785 31922 31943 47095 47095 -0.039615776906771316 VAGESDRID 9 Unmodified _VAGESDRID_ 0 0 0 nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A nc|ENSG00000119866|Q9H165-2|BCL11A nc|ENSG00000119866|Q9H165-2|BCL11A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23272705078125 2 481.232896 960.451239 NaN NaN NaN NaN NaN NaN NaN 155.32 1 150.03 149.53 150.53 -5.2854 0 0 0 0.23508 1 30127 30127 7.9102 2.6795 1 47941 3104 31923 31944 47096 47096 -0.030568877298492225 VAGFTGASQND 11 Unmodified _VAGFTGASQND_ 0 0 0 ITCH-PIGU|1|fusion;nc|ENSG00000289720|Q96J02|ITCH ITCH-PIGU|1|fusion ITCH-PIGU|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825927734375 2 533.743628 1065.4727 0.65656 0.00035043 2.7903 0.0014893 3.4469 0.0018398 533.745584048575 103.33 0.84811 99.294 98.906 99.754 -4.0353 18 12 2 0 0 0 0.89764 1 19790 19790 8.1555 1.4324 1 1227600 47942 11959 31924 31945 47097 47097 -0.0574150270113023 VAGGQPRH 8 Unmodified _VAGGQPRH_ 0 0 0 REV__ENST00000554578.5_1_12:57637331-57638104:-|nuORF REV__ENST00000554578.5_1_12:57637331-57638104:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 411.22149658203125 2 411.222469 820.430384 NaN NaN NaN NaN NaN NaN NaN 49.998 1 47.117 46.617 47.617 -2.8811 0 0 0 0.21486 1 9479 9479 6.3541 0 1 + 47943 22976 31925 31946 47098 47098 0.012986114718046338 VAGGSGGD 8 Unmodified _VAGGSGGD_ 0 0 0 WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-3|WDR81 WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650390625 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 152.97 1 148.2 147.7 148.7 -4.7684 0 0 0 0.21486 1 30397 30397 0.79363 0 1 47944 5839 31926 31947 47099 47099 -0.06348129601428809 VAGGSGGD 8 Unmodified _VAGGSGGD_ 0 0 0 WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-3|WDR81 WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 151.73 1 146.5 146 147 -5.2365 0 0 0 0.2396 1 29410 29410 0.0082765 0 1 47945 5839 31926 31947 47100 47100 -0.06348129601428809 VAGHRRPG 8 Unmodified _VAGHRRPG_ 0 0 0 ENST00000341418.9_1_15:68117364-68118504:+|nuORF ENST00000341418.9_1_15:68117364-68118504:+|nuORF ENST00000341418.9_1_15:68117364-68118504:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2412414550781 2 425.243735 848.472918 NaN NaN NaN NaN NaN NaN NaN 34.779 1 32.503 32.003 33.003 -2.2766 0 0 0 0.23366 1 6104 6104 0.62683 0 1 47946 8857 31927 31948 47101 47101 0.04262006600049517 VAGLERRQD 9 Unmodified _VAGLERRQD_ 0 0 0 REV__ENSG00000179094|ENST00000317276|PER1 REV__ENSG00000179094|ENST00000317276|PER1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2811889648438 2 522.283254 1042.55196 NaN NaN NaN NaN NaN NaN NaN 161.84 1 161.84 161.34 162.34 0 0 0 0 0.23508 1 32509 32509 7.9102 1.7044 1 + 47947 18638 31928 31949 47102 47102 0.032381890436681715 VAGLHMPRW 9 Unmodified _VAGLHMPRW_ 0 0 0 REV__ENST00000465695.1_1_10:75532330-75533574:+|nuORF REV__ENST00000465695.1_1_10:75532330-75533574:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2858276367188 2 533.784379 1065.5542 0.09133 4.875E-05 0.085263 4.5512E-05 0.17659 9.4262E-05 533.7843071807275 135.53 0.34682 130.89 130.73 131.08 -4.6399 13 9 2 0 0 0 0.8319 1 26735 26735 12.532 0 1 1670600 + 47948 19292 31929 31950 47103 47103 0.024049462477705674 VAGLIRSSRQ 10 Unmodified _VAGLIRSSRQ_ 0 0 0 ENST00000369769.3_1_1:111216478-111216679:-|nuORF ENST00000369769.3_1_1:111216478-111216679:-|nuORF ENST00000369769.3_1_1:111216478-111216679:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.784912109375 2 543.822547 1085.63054 NaN NaN NaN NaN NaN NaN NaN 157.93 1 152.66 152.16 153.16 -5.2748 0 0 0 0.22588 1 30652 30652 6.7232 0.51738 1 47949 9127 31930 31951 47104 47104 0.09115041348741215 VAGLLLLLRL 10 Unmodified _VAGLLLLLRL_ 0 0 0 REV__RAMP2|p.I154Hfs*16|1|0.28|ENSG00000131477|chr17:42762778-42762779|-/C|frameshift_variant REV__RAMP2|p.I154Hfs*16|1|0.28|ENSG00000131477|chr17:42762778-42762779|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2623291015625 2 540.878802 1079.74305 0.46774 0.00025299 1.655 0.00089518 2.1228 0.0011482 540.8795970053056 124.59 0.21214 119.82 119.74 119.95 -4.7681 6 5 2 0 0 0 0.91149 1 23949 23949 0.45834 0 1 834420 + 47950 16077 31931 31952 47105 47105 0.20636922092876375 VAGMHGNE 8 Unmodified _VAGMHGNE_ 0 0 0 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3523559570312 1 814.351213 813.343937 0.71294 0.00058058 -3.7542 -0.0030572 -3.0413 -0.0024766 814.3470024234448 171.65 0.17604 166.86 166.7 166.88 -4.7898 5 4 2 0 0 0 0.72231 1 34916 34916 11.114 0.93107 1 5874700 47951 1738 31932 31953 47106 47106 -0.07020136145081324 VAGMVHQL 8 Unmodified _VAGMVHQL_ 0 0 0 ENSG00000155269|ENST00000382487|GPR78 ENSG00000155269|ENST00000382487|GPR78 ENSG00000155269|ENST00000382487|GPR78 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 428.2560119628906 2 427.73128 853.448008 0.046959 2.0086E-05 1.1286 0.00048276 1.1756 0.00050284 427.7315984659891 140.1 0.72343 135.15 134.88 135.6 -4.952 28 20 2 0 0 0 0.87247 1 27014 27014 0.62683 0.50396 1 2141200 47952 5040 31933 31954 47107 47107 0.015421906824371945 VAGMVHQL 8 Unmodified _VAGMVHQL_ 0 0 0 ENSG00000155269|ENST00000382487|GPR78 ENSG00000155269|ENST00000382487|GPR78 ENSG00000155269|ENST00000382487|GPR78 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 427.73128 853.448008 -0.11164 -4.7753E-05 1.2921 0.00055269 1.1805 0.00050493 427.7317074981557 139.71 0.62743 135.06 134.76 135.38 -4.6439 -0.073913 6.3257E-05 NaN 0.62683 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2965700 47953 5040 31933 31954 0.015421906824371945 VAGMVHQL 8 Unmodified _VAGMVHQL_ 0 0 0 ENSG00000155269|ENST00000382487|GPR78 ENSG00000155269|ENST00000382487|GPR78 ENSG00000155269|ENST00000382487|GPR78 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 427.73128 853.448008 0.0097421 4.167E-06 1.1976 0.00051224 1.2073 0.00051641 427.7316809864294 140.05 0.63275 135.2 134.91 135.54 -4.8492 0.063213 -1.7632E-05 NaN 0.62683 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2629700 47954 5040 31933 31954 0.015421906824371945 VAGNSPKKQAS 11 Unmodified _VAGNSPKKQAS_ 0 0 0 nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7965698242188 2 543.798737 1085.58292 NaN NaN NaN NaN NaN NaN NaN 60.134 1 57.2 56.7 57.7 -2.9333 0 0 0 0.22943 1 11565 11565 8.7454 0.83525 1 47955 3320 31934 31955 47108 47108 0.043553423578941874 VAGREMVGP 9 Unmodified _VAGREMVGP_ 0 0 0 nc|ENSG00000125618|Q06710-2|PAX8 nc|ENSG00000125618|Q06710-2|PAX8 nc|ENSG00000125618|Q06710-2|PAX8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23846435546875 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 112.85 1 108.58 108.08 109.08 -4.2725 0 0 0 0.23508 1 21730 21730 12.532 3.1841 1 47956 12305 31935 31956 47109 47109 0.003732718485480291 VAGSDGCI 8 Unmodified _VAGSDGCI_ 0 0 0 REV__tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1 REV__tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1634521484375 2 361.162896 720.31124 NaN NaN NaN NaN NaN NaN NaN 79.18 1 75.67 75.17 76.17 -3.5102 0 0 0 0.21486 1 15464 15464 2.8892 0 1 + 47957 25312 31936 31957 47110 47110 -0.06010343267917051 VAGTATCA 8 Unmodified _VAGTATCA_ 0 0 0 REV__ENST00000373669.6_1_X:71401532-71406332:+|nuORF REV__ENST00000373669.6_1_X:71401532-71406332:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 347.2944030761719 2 347.165439 692.316325 NaN NaN NaN NaN NaN NaN NaN 5.0413 1 4.0325 3.5325 4.5325 -1.0089 0 0 0 0.21486 1 176 176 2.5775 1.7838 1 + 47958 21046 31937 31958 47111 47111 -0.042140394053149066 VAGTATCA 8 Unmodified _VAGTATCA_ 0 0 0 REV__ENST00000373669.6_1_X:71401532-71406332:+|nuORF REV__ENST00000373669.6_1_X:71401532-71406332:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 347.2943420410156 2 347.165439 692.316325 NaN NaN NaN NaN NaN NaN NaN 6.7027 1 5.6879 5.1879 6.1879 -1.0148 0 0 0 0.21486 1 464 464 5.7604 3.1829 1 + 47959 21046 31937 31958 47112 47112 -0.042140394053149066 VAGTETTSTTL 11 Unmodified _VAGTETTSTTL_ 0 0 0 nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;CYP2C8|p.F401Vfs*16|1|0.07|ENSG00000138115|chr10:95038987-95038988|-/GAGAGAAC|frameshift_variant;ENSG00000138115|ENST00000371270|CYP2C8 nc|ENSG00000138115|P10632-2|CYP2C8 nc|ENSG00000138115|P10632-2|CYP2C8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2807006835938 2 540.774593 1079.53463 0.58514 0.00031643 1.9098 0.0010328 2.4949 0.0013492 541.2778668129026 104.97 0.58701 104.97 104.59 105.17 0 26 16 2 0 0 0 0.69278 1 20576 20576 12.241 2.8932 1 1967800 47960 768 31938 31959 47113 47113 -0.00195196072672843 VAGTKRDVEL 10 Unmodified _VAGTKRDVEL_ 0 0 0 REV__nc|ENSG00000188811|Q5JS37-2|NHLRC3 REV__nc|ENSG00000188811|Q5JS37-2|NHLRC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7925415039062 2 544.308938 1086.60332 0.33187 0.00018064 -0.99757 -0.00054298 -0.6657 -0.00036235 544.8079195959441 127.61 0.23928 127.61 127.44 127.68 0 8 6 2 0 0 0 0.78938 1 25198 25198 16.149 4.5088 1 1096500 + 47961 19173 31939 31960 47114 47114 0.06348513017701407 VAGTSLLTTV 10 Unmodified _VAGTSLLTTV_ 0 0 0 REV__tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1 REV__tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7834777832031 2 481.281857 960.549162 -0.023724 -1.1418E-05 -0.24255 -0.00011674 -0.26627 -0.00012815 481.28166765028675 79.91 0.92024 76.105 75.646 76.566 -3.8048 59 25 3 0 0 0 0.33163 1 15107 15107 1.9275 1.0826 1 5163900 + 47962 25465 31940 31961 47115 47115 0.06730920866141332 VAGVAGRR 8 Unmodified _VAGVAGRR_ 0 0 0 REV__ENST00000463663.6_1_10:124134413-124152763:+|nuORF REV__ENST00000463663.6_1_10:124134413-124152763:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.396484375 1 785.474046 784.46677 0.70653 0.00055496 -0.95688 -0.0007516 -0.25034 -0.00019664 785.4761260953148 174.81 0.09964 169.92 169.84 169.94 -4.8916 4 2 2 0 0 0 1.0035 1 34802 34802 2.8892 0 1 6101500 + 47963 21924 31941 31962 47116 47116 0.0659148836850818 VAGVSVTS 8 Unmodified _VAGVSVTS_ 0 0 0 ENSG00000166866|ENST00000300119|MYO1A ENSG00000166866|ENST00000300119|MYO1A ENSG00000166866|ENST00000300119|MYO1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 74.877 1 74.877 74.377 75.377 0 0 0 0 0.21452 1 14540 14540 13.508 0 1 47964 5757 31942 31963 47117 47117 0.015661625349594033 VAGVVPGTSME 11 Unmodified _VAGVVPGTSME_ 0 0 0 BRD8|p.A531G|1|0.57|ENSG00000112983|chr5:138164853-138164853|G/C|missense_variant BRD8|p.A531G|1|0.57|ENSG00000112983|chr5:138164853-138164853|G/C|missense_variant BRD8|p.A531G|1|0.57|ENSG00000112983|chr5:138164853-138164853|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7017211914062 2 523.762975 1045.5114 NaN NaN NaN NaN NaN NaN NaN 162.63 1 157.48 156.98 157.98 -5.1438 0 0 0 0.22862 1 31606 31606 9.3831 2.0939 1 47965 329 31943 31964 47118 47118 -0.009539133909811426 VAGWDLRY 8 Unmodified _VAGWDLRY_ 0 0 0 ENST00000445902.2_1_6:33238004-33239525:-|nuORF;ENST00000482399.5_1_6:33239303-33239525:-|nuORF ENST00000445902.2_1_6:33238004-33239525:-|nuORF ENST00000445902.2_1_6:33238004-33239525:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2550048828125 2 490.253434 978.492316 NaN NaN NaN NaN NaN NaN NaN 52.505 1 52.505 52.005 53.005 0 0 0 0 0.21486 1 9980 9980 11.114 0.93107 1 47966 9937 31944 31965 47119 47119 0.002209181002854166 VAGWDLRY 8 Unmodified _VAGWDLRY_ 0 0 0 ENST00000445902.2_1_6:33238004-33239525:-|nuORF;ENST00000482399.5_1_6:33239303-33239525:-|nuORF ENST00000445902.2_1_6:33238004-33239525:-|nuORF ENST00000445902.2_1_6:33238004-33239525:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2542724609375 2 490.253434 978.492316 NaN NaN NaN NaN NaN NaN NaN 55.583 1 52.699 52.199 53.199 -2.8837 0 0 0 0.21486 1 10640 10640 11.114 0.93107 1 47967 9937 31944 31965 47120 47120 0.002209181002854166 VAHEIPHA 8 Unmodified _VAHEIPHA_ 0 0 0 REV__ENST00000423554.5_1_5:154200818-154202893:-|nuORF REV__ENST00000423554.5_1_5:154200818-154202893:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2177734375 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 50.183 1 47.184 46.684 47.684 -2.999 0 0 0 0.21486 1 9189 9189 5.7604 1.0044 1 + 47968 18150 31945 31966 47121 47121 0.009123624117592044 VAHKLFNNLK 10 Unmodified _VAHKLFNNLK_ 0 0 0 ENST00000415651.1_1_2:26217896-26217947:+|nuORF;ENST00000489056.5_1_1:46774806-46782253:+|nuORF;ENST00000496387.5_1_1:46775653-46782253:+|nuORF;ENSG00000233954|ENST00000696689|UQCRHL;ENSG00000173660|ENST00000311672|UQCRH;ENST00000460947.1_1_1:46775649-46782253:+|nuORF ENST00000415651.1_1_2:26217896-26217947:+|nuORF ENST00000415651.1_1_2:26217896-26217947:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.5235595703125 3 395.236385 1182.68733 -0.27519 -0.00010877 -0.37526 -0.00014832 -0.65045 -0.00025708 395.2363411785331 43.701 0.48399 40.911 40.736 41.22 -2.79 17 13 2 0 0 0 0.97718 1 8220 8220 24.991 7.8781 1 755190 47969 6304 31946 31967 47122 47122 0.10329088905245953 VAHKRADRL 9 Unmodified _VAHKRADRL_ 0 0 0 REV__nc|ENSG00000113303|Q6UX41-4|BTNL8 REV__nc|ENSG00000113303|Q6UX41-4|BTNL8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2836303710938 2 533.317432 1064.62031 NaN NaN NaN NaN NaN NaN NaN 164.78 1 164.78 164.28 165.28 0 0 0 0 0.22621 1 33363 33363 15.847 1.0089 1 + 47970 13221 31947 31968 47123 47123 0.09058478414158344 VAHKRTGIVN 10 Unmodified _VAHKRTGIVN_ 0 0 0 ENST00000316308.8_1_5:178045768-178050359:-|nuORF ENST00000316308.8_1_5:178045768-178050359:-|nuORF ENST00000316308.8_1_5:178045768-178050359:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7866821289062 2 547.825089 1093.63563 NaN NaN NaN NaN NaN NaN NaN 34.964 1 32.711 32.211 33.211 -2.2527 0 0 0 0.22588 1 6144 6144 6.2058 0.47393 1 47971 8680 31948 31969 47124 47124 0.0925534521136342 VAHVLLILL 9 Unmodified _VAHVLLILL_ 0 0 0 nc|ENSG00000091181|Q01344-5|IL5RA;nc|ENSG00000091181|Q01344-3|IL5RA;nc|ENSG00000091181|Q01344-2|IL5RA;nc|ENSG00000091181|Q01344-4|IL5RA;ENSG00000091181|ENST00000446632|IL5RA nc|ENSG00000091181|Q01344-5|IL5RA nc|ENSG00000091181|Q01344-5|IL5RA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 495.8539733886719 2 495.839146 989.663738 NaN NaN NaN NaN NaN NaN NaN 9.9581 1 9.9581 9.4581 10.458 0 0 0 0 0.23508 1 1207 1207 0 0 1 47972 1807 31949 31970 47125 47125 0.1684927513877028 VAHYIVNKV 9 Unmodified _VAHYIVNKV_ 0 0 0 REV__ENSG00000115548|ENST00000312912|KDM3A REV__ENSG00000115548|ENST00000312912|KDM3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2653198242188 2 521.805834 1041.59712 -0.47442 -0.00024756 0.57577 0.00030044 0.10135 5.2884E-05 521.8060740881295 115.54 1.4998 110.96 110.27 111.77 -4.5792 109 42 3 0 0 0 0.49001 1 22227 22227 28.487 0 1 10255000 + 47973 15438 31950 31971 47126 47126 0.0779803957684635 VAIAWWHRL 9 Unmodified _VAIAWWHRL_ 0 0 0 REV__ENST00000471550.1_1_7:38247105-38254853:+|nuORF REV__ENST00000471550.1_1_7:38247105-38254853:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3245849609375 2 576.327268 1150.63998 NaN NaN NaN NaN NaN NaN NaN 154.44 1 149.67 149.17 150.17 -4.7714 0 0 0 0.19636 1 30696 30696 2.4985 2.2331 1 + 47974 22042 31951 31972 47127 47127 0.07068854424915116 VAICGVDP 8 Unmodified _VAICGVDP_ 0 0 0 REV__nc|ENSG00000145734|A6H8Y1-8|BDP1 REV__nc|ENSG00000145734|A6H8Y1-8|BDP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.1943664550781 2 387.196739 772.378925 NaN NaN NaN NaN NaN NaN NaN 147.98 1 142.92 142.42 143.42 -5.0595 0 0 0 0.23711 1 28658 28658 0.0082765 0 1 + 47975 16851 31952 31973 47128 47128 -0.016368933371268213 VAIGNKLGK 9 Unmodified _VAIGNKLGK_ 0 0 0 ENST00000354336.7_1_22:21271762-21271852:+|nuORF ENST00000354336.7_1_22:21271762-21271852:+|nuORF ENST00000354336.7_1_22:21271762-21271852:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.7785339355469 2 450.287277 898.560001 0.084011 3.7829E-05 -0.67909 -0.00030578 -0.59508 -0.00026796 450.28677699735465 114.27 0.42171 109.72 109.45 109.87 -4.555 15 11 2 0 0 0 0.47592 1 21895 21895 12.241 0 1 695120 47976 8941 31953 31974 47129 47129 0.10666368031081674 VAIGNKLGK 9 Unmodified _VAIGNKLGK_ 0 0 0 ENST00000354336.7_1_22:21271762-21271852:+|nuORF ENST00000354336.7_1_22:21271762-21271852:+|nuORF ENST00000354336.7_1_22:21271762-21271852:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 450.287277 898.560001 0.30091 0.00013549 -0.78084 -0.0003516 -0.47993 -0.00021611 450.28674741017517 110 0.37478 110 109.78 110.16 0 0.1395 -5.6016E-05 NaN 12.241 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 747510 47977 8941 31953 31974 0.10666368031081674 VAINVLFF 8 Unmodified _VAINVLFF_ 0 0 0 ENSG00000164073|ENST00000641686|MFSD8;ENST00000505284.5_1_4:128842916-128886288:-|nuORF;ENST00000515130.5_1_4:128842916-128886236:-|nuORF ENSG00000164073|ENST00000641686|MFSD8 ENSG00000164073|ENST00000641686|MFSD8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.539306640625 2 461.773471 921.53239 NaN NaN NaN NaN NaN NaN NaN 115.49 1 110.93 110.43 111.43 -4.555 0 0 0 0.22847 1 22172 22172 10.074 3.4436 1 47978 5502 31954 31975 47130 47130 0.0684846477084875 VAIVLILGM 9 Unmodified _VAIVLILGM_ 0 0 0 REV__SEC62|p.K324Rfs*23|1|0.08|ENSG00000008952|chr3:169992833-169992834|-/G|frameshift_variant REV__SEC62|p.K324Rfs*23|1|0.08|ENSG00000008952|chr3:169992833-169992834|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650695800781 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 11.192 1 10.288 9.7885 10.788 -0.90401 0 0 0 0.23508 1 1463 1463 0 0 1 + 47979 13907 31955 31976 47131 47131 0.11602251104375227 VAIVLILGM 9 Unmodified _VAIVLILGM_ 0 0 0 REV__SEC62|p.K324Rfs*23|1|0.08|ENSG00000008952|chr3:169992833-169992834|-/G|frameshift_variant REV__SEC62|p.K324Rfs*23|1|0.08|ENSG00000008952|chr3:169992833-169992834|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1643371582031 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 11.405 1 10.501 10.001 11.001 -0.90401 0 0 0 0.23508 1 1508 1508 0 0 1 + 47980 13907 31955 31976 47132 47132 0.11602251104375227 VAIVLILGM 9 Unmodified _VAIVLILGM_ 0 0 0 REV__SEC62|p.K324Rfs*23|1|0.08|ENSG00000008952|chr3:169992833-169992834|-/G|frameshift_variant REV__SEC62|p.K324Rfs*23|1|0.08|ENSG00000008952|chr3:169992833-169992834|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16644287109375 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 15.216 1 14.101 13.601 14.601 -1.1142 0 0 0 0.19635 1 2333 2333 0 0 1 + 47981 13907 31955 31976 47133 47133 0.11602251104375227 VAIVLILGM 9 Unmodified _VAIVLILGM_ 0 0 0 REV__SEC62|p.K324Rfs*23|1|0.08|ENSG00000008952|chr3:169992833-169992834|-/G|frameshift_variant REV__SEC62|p.K324Rfs*23|1|0.08|ENSG00000008952|chr3:169992833-169992834|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646423339844 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 12.373 1 11.244 10.744 11.744 -1.1293 0 0 0 0.23508 1 1512 1512 0 0 1 + 47982 13907 31955 31976 47134 47134 0.11602251104375227 VAIYNYNT 8 Unmodified _VAIYNYNT_ 0 0 0 DOCK5|p.A21T|1|0.26|ENSG00000147459|chr8:25243691-25243691|G/A|missense_variant DOCK5|p.A21T|1|0.26|ENSG00000147459|chr8:25243691-25243691|G/A|missense_variant DOCK5|p.A21T|1|0.26|ENSG00000147459|chr8:25243691-25243691|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7405090332031 2 479.23745 956.460347 0.091192 4.3702E-05 -0.0091519 -4.3859E-06 0.08204 3.9316E-05 479.2372665692246 141.86 0.34071 136.88 136.67 137.01 -4.9877 11 9 2 0 0 0 0.81042 1 27321 27321 23.148 1.4018 1 1371400 47983 880 31956 31977 47135 47135 -0.019624943735266243 VAIYNYNT 8 Unmodified _VAIYNYNT_ 0 0 0 DOCK5|p.A21T|1|0.26|ENSG00000147459|chr8:25243691-25243691|G/A|missense_variant DOCK5|p.A21T|1|0.26|ENSG00000147459|chr8:25243691-25243691|G/A|missense_variant DOCK5|p.A21T|1|0.26|ENSG00000147459|chr8:25243691-25243691|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 479.23745 956.460347 0.065434 3.1359E-05 -1.6625 -0.00079672 -1.597 -0.00076536 479.23764014635674 141.66 0.17513 137.01 136.92 137.1 -4.6493 0.064831 -0.0014947 NaN 23.148 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 771670 47984 880 31956 31977 -0.019624943735266243 VAKAPGSQYG 10 Unmodified _VAKAPGSQYG_ 0 0 0 REV__SHROOM4|p.N591*|1|0.05|ENSG00000158352|chrX:50634293-50634303|TACGCAGATTG/-|frameshift_variant REV__SHROOM4|p.N591*|1|0.05|ENSG00000158352|chrX:50634293-50634303|TACGCAGATTG/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25738525390625 2 489.256174 976.497795 0.18014 8.8136E-05 -1.0502 -0.00051383 -0.87008 -0.00042569 489.2556967697151 63.351 0.47128 60.353 60.017 60.488 -2.9975 33 13 3 0 0 0 0.664 1 12196 12196 14.838 1.3304 1 5149000 + 47985 17332 31957 31978 47136 47136 0.00860596892096055 VAKAPGSQYG 10 Unmodified _VAKAPGSQYG_ 0 0 0 REV__SHROOM4|p.N591*|1|0.05|ENSG00000158352|chrX:50634293-50634303|TACGCAGATTG/-|frameshift_variant REV__SHROOM4|p.N591*|1|0.05|ENSG00000158352|chrX:50634293-50634303|TACGCAGATTG/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.256174 976.497795 0.29611 0.00014487 -0.85669 -0.00041914 -0.56058 -0.00027427 489.2556539092891 63.76 0.38074 60.345 60.113 60.494 -3.4158 -0.037753 3.1892E-05 NaN 14.838 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4042600 + 47986 17332 31957 31978 0.00860596892096055 VAKAPGSQYG 10 Unmodified _VAKAPGSQYG_ 0 0 0 REV__SHROOM4|p.N591*|1|0.05|ENSG00000158352|chrX:50634293-50634303|TACGCAGATTG/-|frameshift_variant REV__SHROOM4|p.N591*|1|0.05|ENSG00000158352|chrX:50634293-50634303|TACGCAGATTG/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.256174 976.497795 0.0093034 4.5517E-06 -0.80452 -0.00039362 -0.79522 -0.00038907 489.25579318278295 63.63 0.41272 60.374 60.055 60.468 -3.2567 -0.0086053 8.2937E-05 NaN 14.838 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 5208900 + 47987 17332 31957 31978 0.00860596892096055 VAKKPLLLQ 9 Unmodified _VAKKPLLLQ_ 0 0 0 REV__nc|ENSG00000230246|P0DKV0|SPATA31C1 REV__nc|ENSG00000230246|P0DKV0|SPATA31C1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.2288513183594 3 337.23046 1008.66955 NaN NaN NaN NaN NaN NaN NaN 176.43 1 176.43 175.93 176.93 0 0 0 0 0.23508 1 36551 36551 0.26902 0 1 + 47988 24281 31958 31979 47137 47137 0.16556373650416845 VAKKYEAELK 10 Unmodified _VAKKYEAELK_ 0 0 0 REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2738037109375 2 589.842613 1177.67067 0.35063 0.00020682 -0.86479 -0.00051009 -0.51416 -0.00030328 590.343732549768 147.95 0.16791 147.95 147.82 147.99 0 5 4 2 0 0 0 0.88533 1 29586 29586 8.7454 0 1 2604100 + 47989 15089 31959 31980 47138 47138 0.0889454322864367 VAKLQAENDV 10 Unmodified _VAKLQAENDV_ 0 0 0 REV__ZNF556|p.S52Vfs*20|1|0.05|ENSG00000172000|chr19:2876116-2876116|A/-|frameshift_variant REV__ZNF556|p.S52Vfs*20|1|0.05|ENSG00000172000|chr19:2876116-2876116|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7930297851562 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 165.78 1 160.8 160.3 161.3 -4.9811 0 0 0 0.22544 1 32437 32437 19.257 6.7254 1 + 47990 25582 31960 31981 47139 47139 0.0323252026373666 VAKPLIIRRVV 11 Unmodified _VAKPLIIRRVV_ 0 0 0 REV__ENST00000287025.3_1_8:97270644-97270794:-|nuORF REV__ENST00000287025.3_1_8:97270644-97270794:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 632.486572265625 2 632.434807 1262.85506 NaN NaN NaN NaN NaN NaN NaN 162.44 1 162.44 161.94 162.94 0 0 0 0 0.22632 1 32661 32661 0.172 0 1 + 47991 20334 31961 31982 47140 47140 0.2341477616987504 VAKQKGKF 8 Unmodified _VAKQKGKF_ 0 0 0 REV__ENST00000377516.6_1_1:7903664-7903865:-|nuORF REV__ENST00000377516.6_1_1:7903664-7903865:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.76043701171875 2 453.281995 904.549437 NaN NaN NaN NaN NaN NaN NaN 24.24 1 22.706 22.206 23.206 -1.5342 0 0 0 0.2396 1 3939 3939 0.0082765 0 1 + 47992 21099 31962 31983 47141 47141 0.09334385376666887 VAKRLHRSL 9 Unmodified _VAKRLHRSL_ 0 0 0 ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8 ENSG00000006071|ENST00000389817|ABCC8 ENSG00000006071|ENST00000389817|ABCC8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 540.8050537109375 2 540.343449 1078.67235 0.39548 0.0002137 -2.1417 -0.0011572 -1.7462 -0.00094354 540.3415890767443 163.95 0.31396 159.16 158.88 159.2 -4.7898 12 8 2 0 0 0 0.61568 1 32649 32649 0.073264 0 1 13048000 47993 1004 31963 31984 47142 47142 0.1361564182791426 VAKSDDTAI 9 Unmodified _VAKSDDTAI_ 0 0 0 REV__ENSG00000115758|ENST00000234111|ODC1 REV__ENSG00000115758|ENST00000234111|ODC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24072265625 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 101.41 1 97.255 96.755 97.755 -4.1594 0 0 0 0.19711 1 19932 19932 0.12781 0.098532 1 + 47994 15447 31964 31985 47143 47143 0.003331844182639543 VALADSLKF 9 Unmodified _VALADSLKF_ 0 0 0 REV__nc|ENSG00000126777|Q86UP2-3|KTN1 REV__nc|ENSG00000126777|Q86UP2-3|KTN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77349853515625 2 482.279118 962.543683 0.43434 0.00020947 -0.45902 -0.00022137 -0.024677 -1.1901E-05 482.2785927235814 117.57 0.48198 112.96 112.61 113.1 -4.6106 21 13 2 0 0 0 0.74655 1 22513 22513 10.824 0 1 742170 + 47995 15864 31965 31986 47144 47144 0.06091242074330694 VALIPILPLE 10 Unmodified _VALIPILPLE_ 0 0 0 REV__nc|ENSG00000130997|Q7Z5Q5-3|POLN REV__nc|ENSG00000130997|Q7Z5Q5-3|POLN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 539.3641967773438 2 539.349543 1076.68453 NaN NaN NaN NaN NaN NaN NaN 170.89 1 170.89 170.39 171.39 0 0 0 0 2.8426 1 35167 35167 0.0013812 0 1 + 47996 16047 31966 31987 47145 47145 0.14925820727762584 VALKIKRVVK 10 Unmodified _VALKIKRVVK_ 0 0 0 ENST00000338176.8_1_4:13370184-13373445:-|nuORF ENST00000338176.8_1_4:13370184-13373445:-|nuORF ENST00000338176.8_1_4:13370184-13373445:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 577.2443237304688 2 577.410801 1152.80705 NaN NaN NaN NaN NaN NaN NaN 170.59 1 165.72 165.22 166.22 -4.873 0 0 0 0.22588 1 33767 33767 0.40072 0 1 47997 8828 31967 31988 47146 47146 0.23675702249829556 VALKKVTTR 9 Unmodified _VALKKVTTR_ 0 0 0 REV__B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant REV__B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.1819763183594 3 339.225598 1014.65496 0.33703 0.00011433 -0.70122 -0.00023787 -0.3642 -0.00012354 339.2253550706622 29.353 0.31992 27.461 27.263 27.583 -1.8928 13 8 2 0 0 0 0.64764 1 4959 4959 0.96228 0 1 306280 + 47998 13171 31968 31989 47147 47147 0.1482230150227224 VALLILILLI 10 Unmodified _VALLILILLI_ 0 0 0 nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM;ENST00000465585.1_1_7:107796889-107818537:-|nuORF nc|ENSG00000091129|Q92823-3|NRCAM nc|ENSG00000091129|Q92823-3|NRCAM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.791259765625 2 547.401579 1092.7886 0.33018 0.00018074 3.5094 0.0019211 3.8396 0.0021018 547.4049714187595 136.68 0.17928 136.68 136.58 136.76 0 6 4 2 0 0 0 0.91149 1 27069 27069 0 0 1 1933400 47999 1804 31969 31990 47148 47148 0.24592147555290467 VALLILILLI 10 Unmodified _VALLILILLI_ 0 0 0 nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM;ENST00000465585.1_1_7:107796889-107818537:-|nuORF nc|ENSG00000091129|Q92823-3|NRCAM nc|ENSG00000091129|Q92823-3|NRCAM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7875366210938 2 547.401579 1092.7886 0.37773 0.00020677 -0.19991 -0.00010943 0.17782 9.734E-05 547.9027894093446 161.41 0.14133 156.62 156.53 156.67 -4.7952 5 3 2 0 0 0 0.91149 1 32097 32097 0.45834 0 1 983650 48000 1804 31969 31990 47149 47149 0.24592147555290467 VALLILLNGLI 11 Unmodified _VALLILLNGLI_ 0 0 0 REV__ENSG00000161807|ENST00000541538|OR7G1 REV__ENSG00000161807|ENST00000541538|OR7G1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3128662109375 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 172.77 1 172.77 172.27 173.27 0 0 0 0 0.23594 1 35687 35687 3.5965 0 1 + 48001 17468 31970 31991 47150 47150 0.19957771544522984 VALLQLIRLI 10 Unmodified _VALLQLIRLI_ 0 0 0 tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1 tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1 tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3206787109375 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 87.727 1 87.727 87.227 88.227 0 0 0 0 2.8426 1 17122 17122 0.26539 0 1 48002 25923 31971 31992 47151 47151 0.21080593638657774 VALLQLIRLI 10 Unmodified _VALLQLIRLI_ 0 0 0 tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1 tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1 tr|U7SIS7|U7SIS7_FUSNUMembraneproteinAbrBduplicationOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02216PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3306274414062 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 90.652 1 86.608 86.108 87.108 -4.0443 0 0 0 2.8426 1 17270 17270 0.043787 0 1 48003 25923 31971 31992 47152 47152 0.21080593638657774 VALMQKNRRK 10 Unmodified _VALMQKNRRK_ 0 0 0 ENST00000483208.5_2_15:42646603-42694336:+|nuORF;CAPN3|p.T599Nfs*33|1|0.25|ENSG00000092529|chr15:42405931-42405932|-/A|frameshift_variant;nc|ENSG00000092529|P20807-2|CAPN3;nc|ENSG00000092529|P20807-3|CAPN3;ENSG00000092529|ENST00000397163|CAPN3 ENST00000483208.5_2_15:42646603-42694336:+|nuORF ENST00000483208.5_2_15:42646603-42694336:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.1958312988281 3 415.252041 1242.73429 NaN NaN NaN NaN NaN NaN NaN 69.307 1 66.128 65.628 66.628 -3.1796 0 0 0 2.8426 1 13476 13476 0.043787 0 1 48004 385 31972 31993 47153 47153 0.12263625184755256 VALRLLERKY 10 Unmodified _VALRLLERKY_ 0 0 0 REV__nc|ENSG00000179886|Q53EQ6-2|TIGD5 REV__nc|ENSG00000179886|Q53EQ6-2|TIGD5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7640991210938 2 630.892972 1259.77139 NaN NaN NaN NaN NaN NaN NaN 78.312 1 78.312 77.812 78.812 0 0 0 0 0.22588 1 15239 15239 7.9102 3.5809 1 + 48005 18670 31973 31994 47154 47154 0.151896200021838 VALSISGN 8 Unmodified _VALSISGN_ 0 0 0 REV__ENSG00000185565|ENST00000490035|LSAMP REV__ENSG00000185565|ENST00000490035|LSAMP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2152404785156 2 380.713611 759.412668 -0.5012 -0.00019081 0.48527 0.00018475 -0.015927 -6.0636E-06 380.7138058117411 39.592 0.59254 37.043 36.719 37.311 -2.5491 35 16 3 0 0 0 8448 1 7316 7316 6.2058 6.0829 1 2672000 + 48006 18976 31974 31995 47155 47155 0.023338514262945864 VALTVEQKMKV 11 Unmodified _VALTVEQKMKV_ 0 0 0 ENST00000339865.9_2_11:11942024-11944340:+|nuORF ENST00000339865.9_2_11:11942024-11944340:+|nuORF ENST00000339865.9_2_11:11942024-11944340:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7789306640625 2 623.365398 1244.71624 0.59229 0.00036921 -0.95989 -0.00059836 -0.3676 -0.00022915 623.364736660611 154.27 0.13684 149.05 148.94 149.08 -5.2209 5 3 2 0 0 0 0.95894 1 29894 29894 5.2969 0.76802 1 747300 48007 8841 31975 31996 47156 47156 0.10367445419387877 VALVGAYPILA 11 Unmodified _VALVGAYPILA_ 0 0 0 REV__DOLK|p.V439I|1|0.27|ENSG00000175283|chr9:128945989-128945989|C/T|missense_variant REV__DOLK|p.V439I|1|0.27|ENSG00000175283|chr9:128945989-128945989|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79638671875 2 543.831517 1085.64848 0.20134 0.0001095 -1.3083 -0.0007115 -1.107 -0.00060201 543.8292937092181 160.24 0.10486 155.01 154.94 155.05 -5.2298 4 2 2 0 0 0 0.9401 1 31116 31116 10.824 8.7642 1 1086900 + 48008 13742 31976 31997 47157 47157 0.10908363550902322 VALVLKKRHLP 11 Unmodified _VALVLKKRHLP_ 0 0 0 REV__ENSG00000166387|ENST00000299492|PPFIBP2 REV__ENSG00000166387|ENST00000299492|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2530822753906 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 27.979 1 27.979 27.479 28.479 0 0 0 0 0.23698 1 4954 4954 0.50596 0 1 + 48009 17842 31977 31998 47158 47158 0.21390489652844735 VALVLKKRHLP 11 Unmodified _VALVLKKRHLP_ 0 0 0 REV__ENSG00000166387|ENST00000299492|PPFIBP2 REV__ENSG00000166387|ENST00000299492|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2384033203125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 28.294 1 28.294 27.794 28.794 0 0 0 0 0.23698 1 5020 5020 0.50596 0 1 + 48010 17842 31977 31998 47159 47159 0.21390489652844735 VALVLKKRHLP 11 Unmodified _VALVLKKRHLP_ 0 0 0 REV__ENSG00000166387|ENST00000299492|PPFIBP2 REV__ENSG00000166387|ENST00000299492|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2539978027344 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 68.305 1 65.125 64.625 65.625 -3.1796 0 0 0 0.23698 1 13264 13264 0.50596 0 1 + 48011 17842 31977 31998 47160 47160 0.21390489652844735 VALVLKKRHLP 11 Unmodified _VALVLKKRHLP_ 0 0 0 REV__ENSG00000166387|ENST00000299492|PPFIBP2 REV__ENSG00000166387|ENST00000299492|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.251953125 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 159.55 1 154.28 153.78 154.78 -5.2712 0 0 0 0.23698 1 30957 30957 0.094841 0 1 + 48012 17842 31977 31998 47161 47161 0.21390489652844735 VALVLKKRHLP 11 Unmodified _VALVLKKRHLP_ 0 0 0 REV__ENSG00000166387|ENST00000299492|PPFIBP2 REV__ENSG00000166387|ENST00000299492|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2429504394531 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 159.58 1 154.31 153.81 154.81 -5.2712 0 0 0 0.23698 1 30964 30964 0.50596 0 1 + 48013 17842 31977 31998 47162 47162 0.21390489652844735 VALVLKKRHLP 11 Unmodified _VALVLKKRHLP_ 0 0 0 REV__ENSG00000166387|ENST00000299492|PPFIBP2 REV__ENSG00000166387|ENST00000299492|PPFIBP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2453918457031 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 160.57 1 155.32 154.82 155.82 -5.2526 0 0 0 0.22632 1 31161 31161 0.00056442 0 1 + 48014 17842 31977 31998 47163 47163 0.21390489652844735 VALVLLIAT 9 Unmodified _VALVLLIAT_ 0 0 0 REV__ENSG00000100312|ENST00000216139|ACR REV__ENSG00000100312|ENST00000216139|ACR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.11676025390625 3 304.875795 911.605554 -0.1664 -5.0732E-05 0.35478 0.00010816 0.18837 5.7431E-05 304.8751820595953 178.75 1.5945 173.84 173.51 175.1 -4.9088 79 45 2 0 0 0 0.88466 1 35766 35766 0 0 1 160210 + 48015 14689 31978 31999 47164 47164 0.14621593493484397 VALVLSGG 8 Unmodified _VALVLSGG_ 0 0 0 tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1 tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1 tr|U7SKU9|U7SKU9_FUSNUNTEfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01940PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 358.53668212890625 2 358.221072 714.42759 NaN NaN NaN NaN NaN NaN NaN 68.062 1 64.699 64.199 65.199 -3.3625 0 0 0 0.21486 1 12843 12843 0.79363 0 1 48016 25969 31979 32000 47165 47165 0.05895343294298527 VALWHIAT 8 Unmodified _VALWHIAT_ 0 0 0 REV__nc|ENSG00000085382|Q8IYU2-4|HACE1 REV__nc|ENSG00000085382|Q8IYU2-4|HACE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.03985595703125 3 304.176356 909.507237 NaN NaN NaN NaN NaN NaN NaN 59.94 1 56.716 56.216 57.216 -3.2237 0 0 0 0.21486 1 11205 11205 1.6526 0.58116 1 + 48017 14474 31980 32001 47166 47166 0.04886409968275984 VAMNEADVI 9 Unmodified _VAMNEADVI_ 0 0 0 tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1 tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1 tr|U7T2F7|U7T2F7_FUSNUGTPaseDerOS=FusobacteriumnucleatumCTI-5OX=1316586GN=derPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2354431152344 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 142.04 1 137.39 136.89 137.89 -4.6493 0 0 0 0.23508 1 28071 28071 8.5933 0.68312 1 48018 26362 31981 32002 47167 47167 -0.02317871453783482 VAMQNSGSY 9 Unmodified _VAMQNSGSY_ 0 0 0 UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant;ENSG00000148154|ENST00000374279|UGCG UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant UGCG|p.L365Cfs*9|4|0.31|ENSG00000148154|chr9:111932900-111932900|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7377014160156 2 478.710742 955.406931 0.90038 0.00043102 -0.31889 -0.00015266 0.58149 0.00027837 478.71066271758724 23.89 0.20821 22.337 22.217 22.425 -1.5532 7 5 2 0 0 0 0.73268 1 4131 4131 18.146 6.5061 1 403420 48019 4729 31982 32003 47168 47168 -0.07255615147687422 VANDPHFV 8 Unmodified _VANDPHFV_ 0 0 0 REV__ENST00000464255.1_1_2:219265892-219269145:+|nuORF REV__ENST00000464255.1_1_2:219265892-219269145:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 300.1528625488281 3 300.152099 897.434466 NaN NaN NaN NaN NaN NaN NaN 98.007 1 93.909 93.409 94.409 -4.0978 0 0 0 0.21486 1 19241 19241 1.6526 0 1 + 48020 16788 31983 32004 47169 47169 -0.018353438251324405 VANGGKCI 8 Unmodified _VANGGKCI_ 0 0 0 REV__ENSG00000001084|ENST00000650454|GCLC REV__ENSG00000001084|ENST00000650454|GCLC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21044921875 2 381.202356 760.390159 NaN NaN NaN NaN NaN NaN NaN 129.54 1 124.73 124.23 125.23 -4.817 0 0 0 0.2396 1 24869 24869 0.12286 0 1 + 48021 13819 31984 32005 47170 47170 0.00037928757001282065 VANHTGCKCL 10 Unmodified _VANHTGCKCL_ 0 0 0 ENSG00000165197|ENST00000297904|VEGFD ENSG00000165197|ENST00000297904|VEGFD ENSG00000165197|ENST00000297904|VEGFD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7003784179688 2 523.249511 1044.48447 0.70968 0.00037134 -3.2738 -0.001713 -2.5641 -0.0013416 523.2509470519034 109.29 0.73822 105.11 104.77 105.51 -4.1826 53 20 4 0 0 0 0.82238 1 20983 20983 8.1555 2.3951 1 2698300 48022 5608 31985 32006 47171 47171 -0.0359930048316528 VANQRHCSL 9 Unmodified _VANQRHCSL_ 0 0 0 ENST00000435485.5_1_9:109262681-109320839:+|nuORF ENST00000435485.5_1_9:109262681-109320839:+|nuORF ENST00000435485.5_1_9:109262681-109320839:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.2109680175781 3 343.174909 1026.5029 NaN NaN NaN NaN NaN NaN NaN 101.48 1 101.48 100.98 101.98 0 0 0 0 0.23508 1 19919 19919 2.7352 0 1 48023 9826 31986 32007 47172 47172 -0.009294225169242054 VANTEEIFY 9 Unmodified _VANTEEIFY_ 0 0 0 REV__ENST00000487297.5_1_21:37408417-37414196:-|nuORF REV__ENST00000487297.5_1_21:37408417-37414196:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7738647460938 2 543.261122 1084.50769 0.33281 0.0001808 0.18874 0.00010254 0.52155 0.00028334 543.2611860491558 125.54 1.202 125.54 124.9 126.1 0 64 33 3 0 0 0 0.067773 1 24783 24783 65.235 2.6623 1 14297000 + 48024 18996 31987 32008 47173 47173 -0.03118259893199138 VANTEEIFY 9 Unmodified _VANTEEIFY_ 0 0 0 REV__ENST00000487297.5_1_21:37408417-37414196:-|nuORF REV__ENST00000487297.5_1_21:37408417-37414196:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.775390625 2 543.261122 1084.50769 0.048321 2.6251E-05 0.41055 0.00022303 0.45887 0.00024928 543.2611903860741 130.78 0.97498 125.94 125.47 126.44 -4.8355 78 27 4 0 0 0 0.067773 2 25125 25054;25125 65.235 7.513 1 13266000 + 48025 18996 31987 32008 47174;47175 47175 -0.03118259893199138 VANTEEIFY 9 Unmodified _VANTEEIFY_ 0 0 0 REV__ENST00000487297.5_1_21:37408417-37414196:-|nuORF REV__ENST00000487297.5_1_21:37408417-37414196:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7755737304688 2 543.261122 1084.50769 0.26324 0.00014301 0.17084 9.2809E-05 0.43407 0.00023581 543.2611537697683 130.62 1.0335 125.85 125.43 126.46 -4.7725 71 29 3 0 0 0 0.041554 1 25119 25119 74.929 12.356 1 14713000 + 48026 18996 31987 32008 47176 47176 -0.03118259893199138 VAPAACPE 8 Unmodified _VAPAACPE_ 0 0 0 ENST00000263026.9_1_16:22217644-22236999:+|nuORF ENST00000263026.9_1_16:22217644-22236999:+|nuORF ENST00000263026.9_1_16:22217644-22236999:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 380.2762756347656 2 379.181089 756.347625 0.040417 1.5325E-05 -3.7169 -0.0014094 -3.6765 -0.0013941 379.18043466359006 177.66 0.28696 172.88 172.67 172.96 -4.7898 18 7 3 0 0 0 0.88047 1 36313 36313 0.79363 0 1 5270500 48027 8319 31988 32009 47177 47177 -0.04029466371230228 VAPAACPE 8 Unmodified _VAPAACPE_ 0 0 0 ENST00000263026.9_1_16:22217644-22236999:+|nuORF ENST00000263026.9_1_16:22217644-22236999:+|nuORF ENST00000263026.9_1_16:22217644-22236999:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 379.181089 756.347625 0.19297 7.3172E-05 -3.685 -0.0013973 -3.492 -0.0013241 379.180418735494 177.81 0.88228 172.94 172.07 172.95 -4.8686 0.03095 3.4349E-06 NaN 0.79363 34 24 3 NaN NaN NaN NaN 0 NaN NaN 0 4011400 48028 8319 31988 32009 -0.04029466371230228 VAPAAIHA 8 Unmodified _VAPAAIHA_ 0 0 0 ENSG00000126767|ENST00000376983|ELK1 ENSG00000126767|ENST00000376983|ELK1 ENSG00000126767|ENST00000376983|ELK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21759033203125 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 115.32 1 110.84 110.34 111.34 -4.4726 0 0 0 0.2396 1 22729 22729 0 0 1 48029 3442 31989 32010 47178 47178 0.03889878871359542 VAPAAIHA 8 Unmodified _VAPAAIHA_ 0 0 0 ENSG00000126767|ENST00000376983|ELK1 ENSG00000126767|ENST00000376983|ELK1 ENSG00000126767|ENST00000376983|ELK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2171936035156 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 155.06 1 149.81 149.31 150.31 -5.2526 0 0 0 0.2396 1 30068 30068 0 0 1 48030 3442 31989 32010 47179 47179 0.03889878871359542 VAPCPWFV 8 Unmodified _VAPCPWFV_ 0 0 0 REV__ENST00000593393.1_1_19:58918335-58918641:-|nuORF REV__ENST00000593393.1_1_19:58918335-58918641:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2324523925781 2 459.730749 917.446945 0.26715 0.00012282 0.13943 6.4102E-05 0.40659 0.00018692 459.73076966850294 101.48 0.68721 97.157 96.784 97.471 -4.3208 46 19 3 0 0 0 0.67903 1 19461 19461 17.087 0.14425 1 5684400 + 48031 23359 31990 32011 47180 47180 -0.015080236864719154 VAPDRINRRY 10 Unmodified _VAPDRINRRY_ 0 0 0 REV__ENST00000395811.9_1_17:17090115-17090496:+|nuORF REV__ENST00000395811.9_1_17:17090115-17090496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7545166015625 2 630.352003 1258.68945 NaN NaN NaN NaN NaN NaN NaN 113.77 1 113.77 113.27 114.27 0 0 0 0 0.22588 1 22373 22373 3.5965 0.31518 1 + 48032 21269 31991 32012 47181 47181 0.07045517643086896 VAPESTEKT 9 Unmodified _VAPESTEKT_ 0 0 0 ENSG00000127084|ENST00000375482|FGD3 ENSG00000127084|ENST00000375482|FGD3 ENSG00000127084|ENST00000375482|FGD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2451171875 2 481.245472 960.476391 -0.0028081 -1.3514E-06 -1.6913 -0.00081393 -1.6941 -0.00081528 481.2443735995941 78.763 0.56695 74.958 74.769 75.336 -3.8048 19 15 2 0 0 0 0.45972 1 14977 14977 8.1555 7.4741 1 564760 48033 3462 31992 32013 47182 47182 -0.0054283292729451205 VAPFLGRQQH 10 Unmodified _VAPFLGRQQH_ 0 0 0 REV__LAMA2|p.K682Efs*22|1|0.32|ENSG00000196569|chr6:129252243-129252244|AA/-|frameshift_variant REV__LAMA2|p.K682Efs*22|1|0.32|ENSG00000196569|chr6:129252243-129252244|AA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3363037109375 2 576.817264 1151.61998 -0.47689 -0.00027508 -1.8366 -0.0010594 -2.3135 -0.0013345 576.8158770226944 15.095 0.21149 13.873 13.752 13.964 -1.2219 11 5 3 0 0 0 0.91149 1 2087 2087 3.9444 0.66309 1 736060 + 48034 19259 31993 32014 47183 47183 0.050230586943371236 VAPGAKLG 8 Unmodified _VAPGAKLG_ 0 0 0 REV__ENST00000229340.9_1_12:120534355-120534604:-|nuORF REV__ENST00000229340.9_1_12:120534355-120534604:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0725402832031 2 356.721239 711.427924 -0.26794 -9.5581E-05 0.6423 0.00022912 0.37436 0.00013354 356.72142002002886 34.537 0.37726 34.537 34.312 34.689 0 13 10 2 0 0 0 1.0268 1 6302 6302 0.79363 0 1 311830 + 48035 20062 31994 32015 47184 47184 0.06066763014143817 VAPGAKLG 8 Unmodified _VAPGAKLG_ 0 0 0 REV__ENST00000229340.9_1_12:120534355-120534604:-|nuORF REV__ENST00000229340.9_1_12:120534355-120534604:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 356.721239 711.427924 -0.68947 -0.00024595 0.82154 0.00029306 0.13208 4.7114E-05 356.7214043973495 36.625 0.28077 34.156 33.979 34.259 -2.4688 -0.19055 6.3959E-05 NaN 0.79363 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 464980 + 48036 20062 31994 32015 0.06066763014143817 VAPIPPLFC 9 Unmodified _VAPIPPLFC_ 0 0 0 ENST00000309880.5_1_11:65122263-65123353:+|nuORF ENST00000309880.5_1_11:65122263-65123353:+|nuORF ENST00000309880.5_1_11:65122263-65123353:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7420959472656 2 478.767332 955.52011 NaN NaN NaN NaN NaN NaN NaN 157.59 1 152.8 152.3 153.3 -4.7885 0 0 0 0.23048 1 31341 31341 14.582 1.0738 1 48037 8637 31995 32016 47185 47185 0.040571050361450034 VAPLHAGP 8 Unmodified _VAPLHAGP_ 0 0 0 REV__ENST00000371586.6_2_1:52818596-52818848:-|nuORF REV__ENST00000371586.6_2_1:52818596-52818848:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 380.8721618652344 2 381.218863 760.423173 -0.61293 -0.00023366 1.0564 0.00040274 0.44352 0.00016908 381.21910753293406 57.642 0.80509 54.437 53.938 54.743 -3.2052 44 22 3 0 0 0 0.85865 1 10698 10698 0.62683 0.50396 1 1440400 + 48038 21009 31996 32017 47186 47186 0.03337878871366229 VAPPLKIDLL 10 Unmodified _VAPPLKIDLL_ 0 0 0 ENST00000272793.9_1_2:170814982-170843277:+|nuORF ENST00000272793.9_1_2:170814982-170843277:+|nuORF ENST00000272793.9_1_2:170814982-170843277:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2133483886719 3 360.23387 1077.67978 NaN NaN NaN NaN NaN NaN NaN 68.79 1 65.254 64.754 65.754 -3.5362 0 0 0 2.8426 1 12938 12938 0.043787 0 1 48039 8412 31997 32018 47187 47187 0.1440493658496962 VAPPPGGHSH 10 Unmodified _VAPPPGGHSH_ 0 0 0 nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7423095703125 2 478.240858 954.467164 -1.1202 -0.00053573 0.83429 0.00039899 -0.28592 -0.00013674 478.2412226016631 18.661 0.49531 17.146 17.02 17.515 -1.5148 22 13 3 0 0 0 0.65405 1 2773 2773 15.847 2.3393 1 1252500 48040 5842 31998 32019 47188 47188 -0.011891367022826671 VAPSCPPG 8 Unmodified _VAPSCPPG_ 0 0 0 NOTCH3|p.P42Lfs*194|1|0.45|ENSG00000074181|chr19:15197572-15197572|G/-|frameshift_variant NOTCH3|p.P42Lfs*194|1|0.45|ENSG00000074181|chr19:15197572-15197572|G/-|frameshift_variant NOTCH3|p.P42Lfs*194|1|0.45|ENSG00000074181|chr19:15197572-15197572|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 364.1967468261719 2 364.175807 726.337061 NaN NaN NaN NaN NaN NaN NaN 73.984 1 73.984 73.484 74.484 0 0 0 0 0.23711 1 14359 14359 0.0082765 0 1 48041 12703 31999 32020 47189 47189 -0.03705449025642338 VAPSRMMQ 8 Unmodified _VAPSRMMQ_ 0 0 0 REV__ENST00000550533.1_1_12:51467850-51470340:-|nuORF REV__ENST00000550533.1_1_12:51467850-51470340:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2301330566406 2 460.228048 918.441542 NaN NaN NaN NaN NaN NaN NaN 86.748 1 82.798 82.298 83.298 -3.9503 0 0 0 0.19342 1 16515 16515 26.884 5.137 1 + 48042 22925 32000 32021 47190 47190 -0.02094070540579196 VAPVLQQTLL 10 Unmodified _VAPVLQQTLL_ 0 0 0 nc|ENSG00000100503|Q8N4C6-5|NIN;NIN|p.K1233Rfs*3|1|0.45|ENSG00000100503|chr14:50757332-50757332|T/-|frameshift_variant;NIN|p.N1391Kfs*8|1|0.03|ENSG00000100503|chr14:50756857-50756858|-/AGGAAAACAC|frameshift_variant;nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN;ENST00000463419.1_1_14:51273386-51297283:-|nuORF;NIN|p.E895Cfs*10|1|0.26|ENSG00000100503|chr14:50758344-50758347|TCTC/-|frameshift_variant;nc|ENSG00000100503|Q8N4C6-6|NIN;nc|ENSG00000100503|Q8N4C6-11|NIN nc|ENSG00000100503|Q8N4C6-5|NIN nc|ENSG00000100503|Q8N4C6-5|NIN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2656860351562 2 541.334424 1080.6543 NaN NaN NaN NaN NaN NaN NaN 83.559 1 83.559 83.059 84.059 0 0 0 0 2.8426 1 16294 16294 0.063865 0 1 48043 12254 32001 32022 47191 47191 0.11719462062569619 VAQHMSLGV 9 Unmodified _VAQHMSLGV_ 0 0 0 SF3B1|p.V1192A|2|0.12|ENSG00000115524|chr2:197393153-197393153|A/G|missense_variant SF3B1|p.V1192A|2|0.12|ENSG00000115524|chr2:197393153-197393153|A/G|missense_variant SF3B1|p.V1192A|2|0.12|ENSG00000115524|chr2:197393153-197393153|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 471.7603454589844 2 471.247295 940.480036 0.079749 3.7582E-05 1.0154 0.0004785 1.0951 0.00051608 471.2477898545439 152.14 0.64229 147.38 147.1 147.74 -4.7523 28 17 2 0 0 0 0.58066 1 30292 30292 7.4771 0 1 2522400 48044 25657 32002 32023 47192 47192 0.007415583655983937 VAQHMSLGV 9 Unmodified _VAQHMSLGV_ 0 0 0 SF3B1|p.V1192A|2|0.12|ENSG00000115524|chr2:197393153-197393153|A/G|missense_variant SF3B1|p.V1192A|2|0.12|ENSG00000115524|chr2:197393153-197393153|A/G|missense_variant SF3B1|p.V1192A|2|0.12|ENSG00000115524|chr2:197393153-197393153|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 471.247295 940.480036 -0.042356 -1.996E-05 1.3444 0.00063355 1.302 0.00061359 471.2477694177911 147.54 0.69569 147.54 147.16 147.85 0 0.057518 0.00036405 NaN 7.4771 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2376000 48045 25657 32002 32023 0.007415583655983937 VAQHMSLGV 9 Unmodified _VAQHMSLGV_ 0 0 0 SF3B1|p.V1192A|2|0.12|ENSG00000115524|chr2:197393153-197393153|A/G|missense_variant SF3B1|p.V1192A|2|0.12|ENSG00000115524|chr2:197393153-197393153|A/G|missense_variant SF3B1|p.V1192A|2|0.12|ENSG00000115524|chr2:197393153-197393153|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 471.247295 940.480036 0.10068 4.7443E-05 0.96312 0.00045387 1.0638 0.00050131 471.2477025308682 152.79 0.69833 147.52 147.18 147.88 -5.2669 0.035784 4.7019E-06 NaN 7.4771 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2593500 48046 25657 32002 32023 0.007415583655983937 VAQHMSLGV 9 Unmodified _VAQHMSLGV_ 0 0 0 SF3B1|p.V1192A|2|0.12|ENSG00000115524|chr2:197393153-197393153|A/G|missense_variant SF3B1|p.V1192A|2|0.12|ENSG00000115524|chr2:197393153-197393153|A/G|missense_variant SF3B1|p.V1192A|2|0.12|ENSG00000115524|chr2:197393153-197393153|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 471.247295 940.480036 0.38139 0.00017973 0.7116 0.00033534 1.093 0.00051507 471.24754710116116 152.71 0.67101 147.49 147.15 147.82 -5.2209 0.008019 -0.00023236 NaN 7.4771 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1785300 48047 25657 32002 32023 0.007415583655983937 VAQKKHKKK 9 Unmodified _VAQKKHKKK_ 0 0 0 REV__CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant REV__CAST|p.E474Kfs*10|1|0.39|ENSG00000153113|chr5:96754695-96754695|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7736206054688 2 547.861475 1093.7084 NaN NaN NaN NaN NaN NaN NaN 146.74 1 146.74 146.24 147.24 0 0 0 0 0.19634 1 29350 29350 0.0033805 0.0019993 1 + 48048 13271 32003 32024 47193 47193 0.16529099004787895 VAQRSPVDS 9 Unmodified _VAQRSPVDS_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 320.1852722167969 3 320.169929 957.487959 NaN NaN NaN NaN NaN NaN NaN 99.38 1 99.38 98.88 99.88 0 0 0 0 0.23508 1 19491 19491 1.0715 0 1 48049 3001 32004 32025 47194 47194 0.007514088867196733 VAQSKFNR 8 Unmodified _VAQSKFNR_ 0 0 0 tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1 tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1 tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1860046386719 3 317.178648 948.514114 NaN NaN NaN NaN NaN NaN NaN 116.14 1 111.78 111.28 112.28 -4.3585 0 0 0 0.21486 1 22360 22360 0.40072 0 1 48050 26471 32005 32026 47195 47195 0.037797228488557266 VAQSTCVCIPD 11 Unmodified _VAQSTCVCIPD_ 0 0 0 ENST00000595753.5_1_19:16664089-16664293:-|nuORF ENST00000595753.5_1_19:16664089-16664293:-|nuORF ENST00000595753.5_1_19:16664089-16664293:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 379.1945495605469 3 379.175587 1134.50493 NaN NaN NaN NaN NaN NaN NaN 79.453 1 75.648 75.148 76.148 -3.8048 0 0 0 0.23689 1 15076 15076 2.8433 0 1 48051 11660 32006 32027 47196 47196 -0.05694174614018266 VAQVKLAEV 9 Unmodified _VAQVKLAEV_ 0 0 0 REV__tr|U7SSG1|U7SSG1_FUSNUStageIIsporulationproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01435PE=4SV=1 REV__tr|U7SSG1|U7SSG1_FUSNUStageIIsporulationproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01435PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7271728515625 2 478.792392 955.570232 -0.36647 -0.00017546 0.55003 0.00026335 0.18356 8.7887E-05 478.79256704294903 110.29 0.69292 105.91 105.52 106.21 -4.3776 44 19 3 0 0 0 0.32263 1 21783 21783 24.021 1.2843 1 5852000 + 48052 25055 32007 32028 47197 47197 0.09066930965650499 VAQVKLAEV 9 Unmodified _VAQVKLAEV_ 0 0 0 REV__tr|U7SSG1|U7SSG1_FUSNUStageIIsporulationproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01435PE=4SV=1 REV__tr|U7SSG1|U7SSG1_FUSNUStageIIsporulationproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01435PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73040771484375 2 478.792392 955.570232 -0.17939 -8.589E-05 0.26611 0.00012741 0.086724 4.1523E-05 478.79251485006864 110.36 0.70076 105.87 105.55 106.25 -4.4915 38 19 3 0 0 0 0.23744 1 21231 21231 52.268 0 1 4692000 + 48053 25055 32007 32028 47198 47198 0.09066930965650499 VAQYLSSIPS 10 Unmodified _VAQYLSSIPS_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2857055664062 2 532.784764 1063.55498 0.67137 0.0003577 0.17443 9.2936E-05 0.84581 0.00045063 532.7849713819849 100.56 0.41316 96.259 96.021 96.434 -4.297 22 11 3 0 0 0 0.5575 1 19207 19207 21.537 4.4241 1 1954400 + 48054 19081 32008 32029 47199 47199 0.025740193778119647 VAQYLSSIPS 10 Unmodified _VAQYLSSIPS_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2840576171875 2 532.784764 1063.55498 0.35192 0.0001875 0.47051 0.00025068 0.82244 0.00043818 532.7853550056058 100.25 0.57944 96.262 95.97 96.55 -3.9895 24 16 2 0 0 0 0.5575 1 19261 19261 21.537 0 1 2753100 + 48055 19081 32008 32029 47200 47200 0.025740193778119647 VARAARRR 8 Unmodified _VARAARRR_ 0 0 0 REV__ENST00000398542.5_1_1:32229497-32229821:-|nuORF REV__ENST00000398542.5_1_1:32229497-32229821:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.2043151855469 3 319.205531 954.594764 NaN NaN NaN NaN NaN NaN NaN 37.526 1 35.178 34.678 35.678 -2.3479 0 0 0 0.23664 1 6651 6651 3.2813 0 1 + 48056 21329 32009 32030 47201 47201 0.11565048682405177 VARCKIII 8 Unmodified _VARCKIII_ 0 0 0 REV__ENST00000494025.1_1_2:84744950-84775489:+|nuORF REV__ENST00000494025.1_1_2:84744950-84775489:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2377014160156 2 458.294048 914.573543 NaN NaN NaN NaN NaN NaN NaN 117.68 1 113.07 112.57 113.57 -4.6106 0 0 0 0.21486 1 22586 22586 10.183 0 1 + 48057 22109 32010 32031 47202 47202 0.11283902538684742 VARDELLF 8 Unmodified _VARDELLF_ 0 0 0 REV__ENSG00000155760|ENST00000286201|FZD7 REV__ENSG00000155760|ENST00000286201|FZD7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76763916015625 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 150.66 1 145.54 145.04 146.04 -5.1204 0 0 0 0.21486 1 29199 29199 9.3474 0 1 + 48058 17224 32011 32032 47203 47203 0.040980714145121055 VARGQVHLLM 10 Unmodified _VARGQVHLLM_ 0 0 0 ENST00000481804.5_1_16:775346-776019:-|nuORF ENST00000481804.5_1_16:775346-776019:-|nuORF ENST00000481804.5_1_16:775346-776019:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2168884277344 3 375.218337 1122.63318 -0.48523 -0.00018207 -3.1595 -0.0011855 -3.6447 -0.0013676 375.2169811856777 17.305 0.14343 15.994 15.886 16.03 -1.3109 8 3 3 0 0 0 0.71021 1 2768 2768 10.151 4.4187 1 164890 48059 10382 32012 32033 47204 47204 0.0767717348203405 VARGRKRK 8 Unmodified _VARGRKRK_ 0 0 0 ENST00000264657.9_1_17:40467307-40467571:-|nuORF ENST00000264657.9_1_17:40467307-40467571:-|nuORF ENST00000264657.9_1_17:40467307-40467571:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1757507324219 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 79.443 1 75.638 75.138 76.138 -3.8048 0 0 0 0.21486 1 15074 15074 1.8442 0 1 48060 8342 32013 32034 47205 47205 0.14478505859267443 VARGRKRK 8 Unmodified _VARGRKRK_ 0 0 0 ENST00000264657.9_1_17:40467307-40467571:-|nuORF ENST00000264657.9_1_17:40467307-40467571:-|nuORF ENST00000264657.9_1_17:40467307-40467571:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.4687805175781 3 324.217548 969.630815 NaN NaN NaN NaN NaN NaN NaN 79.627 1 75.951 75.451 76.451 -3.676 0 0 0 0.23837 1 15173 15173 0.0082765 0 1 48061 8342 32013 32034 47206 47206 0.14478505859267443 VARNFAEL 8 Unmodified _VARNFAEL_ 0 0 0 REV__ENSG00000164399|ENST00000296870|IL3 REV__ENSG00000164399|ENST00000296870|IL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2443542480469 2 460.253434 918.492316 -0.081432 -3.7479E-05 0.24813 0.0001142 0.1667 7.6725E-05 460.25356939280226 78.955 1.0184 75.151 74.663 75.681 -3.8048 34 28 2 0 0 0 0.69085 1 15021 15021 15.768 0 1 1159100 + 48062 17679 32014 32035 47207 47207 0.029809181002860896 VARPQPQRSL 10 Unmodified _VARPQPQRSL_ 0 0 0 RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant;ENSG00000254656|ENST00000649591|RTL1 RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3340454101562 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 159.84 1 154.58 154.08 155.08 -5.2526 0 0 0 0.22588 1 31014 31014 8.1555 0 1 48063 7926 32015 32036 47208 47208 0.08778730240078403 VARSILGGGT 10 Unmodified _VARSILGGGT_ 0 0 0 ENST00000372695.5_1_X:102470037-102470112:+|nuORF ENST00000372695.5_1_X:102470037-102470112:+|nuORF ENST00000372695.5_1_X:102470037-102470112:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.1982421875 3 310.85042 929.529429 -0.33751 -0.00010491 0.24922 7.7471E-05 -0.088285 -2.7444E-05 310.85045947894906 18.994 0.38886 17.668 17.506 17.895 -1.3251 27 10 4 0 0 0 0.76826 1 2910 2910 0 0 1 3268700 48064 9184 32016 32037 47209 47209 0.061845896460681615 VARSILGGGT 10 Unmodified _VARSILGGGT_ 0 0 0 ENST00000372695.5_1_X:102470037-102470112:+|nuORF ENST00000372695.5_1_X:102470037-102470112:+|nuORF ENST00000372695.5_1_X:102470037-102470112:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 310.85042 929.529429 -0.54718 -0.00017009 0.60686 0.00018864 0.059677 1.8551E-05 310.8505692552821 17.782 0.43405 17.782 17.589 18.023 0 0.068895 0.00024357 NaN 0 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3580000 48065 9184 32016 32037 0.061845896460681615 VARTDWAP 8 Unmodified _VARTDWAP_ 0 0 0 REV__ENSG00000204438|ENST00000375896|GPANK1 REV__ENSG00000204438|ENST00000375896|GPANK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2381286621094 2 458.237784 914.461016 0.048904 2.241E-05 0.79436 0.000364 0.84326 0.00038641 458.2381246318011 56.968 0.63252 56.968 56.675 57.307 0 27 17 2 0 0 0 0.56049 1 10882 10882 24.674 0 1 1882200 + 48066 19535 32017 32038 47210 47210 0.00036345066178000707 VARTDWAP 8 Unmodified _VARTDWAP_ 0 0 0 REV__ENSG00000204438|ENST00000375896|GPANK1 REV__ENSG00000204438|ENST00000375896|GPANK1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 458.237784 914.461016 0.048904 2.241E-05 0.79436 0.000364 0.84326 0.00038641 458.2381246318011 56.968 0.63252 56.968 56.675 57.307 0 0.058057 3.285E-06 NaN 24.674 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1882200 + 48067 19535 32017 32038 0.00036345066178000707 VARTDWAP 8 Unmodified _VARTDWAP_ 0 0 0 REV__ENSG00000204438|ENST00000375896|GPANK1 REV__ENSG00000204438|ENST00000375896|GPANK1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 458.237784 914.461016 0.036249 1.6611E-05 0.68976 0.00031607 0.72601 0.00033268 458.2380597892279 60.244 0.67417 56.93 56.516 57.19 -3.3139 0.019484 -9.2575E-05 NaN 24.674 38 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1394700 + 48068 19535 32017 32038 0.00036345066178000707 VARWAWFF 8 Unmodified _VARWAWFF_ 0 0 0 ENST00000429989.7_1_10:82278441-82278501:+|nuORF ENST00000429989.7_1_10:82278441-82278501:+|nuORF ENST00000429989.7_1_10:82278441-82278501:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.007568359375 3 361.523867 1081.54977 -0.91486 -0.00033075 0.81834 0.00029585 -0.096522 -3.4895E-05 361.85831118067836 14.808 0.20836 13.694 13.572 13.78 -1.1142 6 5 2 0 0 0 1.028 1 2248 2248 0 0 1 103540 48069 9768 32018 32039 47211 47211 0.012258050964874201 VARYRDIS 8 Unmodified _VARYRDIS_ 0 0 0 REV__EDNRB|p.Y293Ifs*3|4|0.17|ENSG00000136160|chr13:77901132-77901132|A/-|frameshift_variant REV__EDNRB|p.Y293Ifs*3|4|0.17|ENSG00000136160|chr13:77901132-77901132|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27130126953125 2 490.269616 978.524678 NaN NaN NaN NaN NaN NaN NaN 153.5 1 148.28 147.78 148.78 -5.2209 0 0 0 0.21486 1 29751 29751 12.532 1.7076 1 + 48070 13776 32019 32040 47212 47212 0.03455705503279205 VASAWLLR 8 Unmodified _VASAWLLR_ 0 0 0 REV__ENSG00000184497|ENST00000375353|TMEM255B REV__ENSG00000184497|ENST00000375353|TMEM255B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22552490234375 2 458.27417 914.533787 NaN NaN NaN NaN NaN NaN NaN 43.818 1 43.818 43.318 44.318 0 0 0 0 0.21452 1 8208 8208 13.508 0.97634 1 + 48071 18901 32020 32041 47213 47213 0.07310098859613845 VASDGQETRQI 11 Unmodified _VASDGQETRQI_ 0 0 0 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3018798828125 2 602.301841 1202.58913 0.19242 0.00011589 0.32658 0.0001967 0.51899 0.00031259 602.3019772141276 21.789 0.45293 20.405 20.211 20.664 -1.3847 35 12 4 0 0 0 0.15858 1 3464 3464 66.457 7.0883 1 3342500 + 48072 24294 32021 32042 47214 47214 -0.004061842012561101 VASDGQETRQI 11 Unmodified _VASDGQETRQI_ 0 0 0 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3019409179688 2 602.301841 1202.58913 0.22663 0.0001365 0.27129 0.0001634 0.49792 0.0002999 602.3019757339406 22.344 0.84542 20.89 20.595 21.44 -1.4535 72 23 5 0 0 0 0.73243 1 3656 3656 9.544 0.9507 1 25761000 + 48073 24294 32021 32042 47215 47215 -0.004061842012561101 VASDGQETRQI 11 Unmodified _VASDGQETRQI_ 0 0 0 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2879638671875 2 602.301841 1202.58913 -0.53534 -0.00032243 0.9912 0.000597 0.45586 0.00027457 602.3025675048257 22.13 0.41696 20.409 20.191 20.607 -1.7211 30 11 3 0 0 0 0.38781 2 3512 3473;3512 45.74 9.2337 1 2711200 + 48074 24294 32021 32042 47216;47217 47217 -0.004061842012561101 VASDGQETRQI 11 Unmodified _VASDGQETRQI_ 0 0 0 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3016967773438 2 602.301841 1202.58913 -0.2114 -0.00012733 0.57502 0.00034634 0.36362 0.00021901 602.3021449508523 24.313 0.55455 22.459 22.155 22.71 -1.8534 44 15 4 0 0 0 0.35379 1 3917 3917 57.722 2.2192 1 7413800 + 48075 24294 32021 32042 47218 47218 -0.004061842012561101 VASDGQETRQI 11 Unmodified _VASDGQETRQI_ 0 0 0 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 602.301841 1202.58913 0.37037 0.00022308 0.19648 0.00011834 0.56685 0.00034142 602.3019020442091 20.556 0.42862 20.556 20.313 20.742 0 0.099156 -0.00026948 NaN 66.457 33 11 4 NaN NaN NaN NaN 0 NaN NaN 0 5176800 + 48076 24294 32021 32042 -0.004061842012561101 VASDGQETRQI 11 Unmodified _VASDGQETRQI_ 0 0 0 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 602.301841 1202.58913 0.19242 0.00011589 0.32658 0.0001967 0.51899 0.00031259 602.3019772141276 21.789 0.45293 20.405 20.211 20.664 -1.3847 -0.051914 -0.00011277 NaN 66.457 35 12 4 NaN NaN NaN NaN 0 NaN NaN 0 3342500 + 48077 24294 32021 32042 -0.004061842012561101 VASDGQETRQI 11 Unmodified _VASDGQETRQI_ 0 0 0 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 REV__nc|ENSG00000253409|A0A1B0GX95|TRBV7-4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 602.301841 1202.58913 -0.53534 -0.00032243 0.9912 0.000597 0.45586 0.00027457 602.3025675048257 22.13 0.41696 20.409 20.191 20.607 -1.7211 -0.047242 0.00068784 NaN 66.457 30 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2711200 + 48078 24294 32021 32042 -0.004061842012561101 VASEVNLTAY 10 Unmodified _VASEVNLTAY_ 0 0 0 ENSG00000089048|ENST00000617257|ESF1 ENSG00000089048|ENST00000617257|ESF1 ENSG00000089048|ENST00000617257|ESF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2832641601562 2 533.774396 1065.53424 0.54012 0.0002883 4.3476 0.0023207 4.8878 0.002609 534.2772729450329 116.43 0.49345 112.08 111.84 112.34 -4.3585 15 13 2 0 0 0 0.82094 1 22459 22459 15.847 0 1 1456800 48079 1746 32022 32043 47219 47219 0.004094289981367183 VASGVAVDAAT 11 Unmodified _VASGVAVDAAT_ 0 0 0 REV__ENST00000603038.1_1_19:34617909-34618176:+|nuORF REV__ENST00000603038.1_1_19:34617909-34618176:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2431945800781 2 480.753464 959.492375 0.01938 9.3172E-06 0.083293 4.0043E-05 0.10267 4.9361E-05 480.7535713988848 29.301 0.45148 29.301 29.09 29.541 0 17 12 2 0 0 0 0.61937 1 5243 5243 17.113 0.54702 1 904500 + 48080 23434 32023 32044 47220 47220 0.011008733095991374 VASISSSPAP 10 Unmodified _VASISSSPAP_ 0 0 0 ENST00000272542.7_1_2:113403645-113404144:+|nuORF ENST00000272542.7_1_2:113403645-113404144:+|nuORF ENST00000272542.7_1_2:113403645-113404144:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.24169921875 2 458.242732 914.470912 -0.12855 -5.8908E-05 -0.052274 -2.3954E-05 -0.18083 -8.2863E-05 458.24256223255327 46.483 0.66446 43.642 43.241 43.906 -2.8409 29 18 2 0 0 0 0.45952 1 8813 8813 26.884 0 1 1519700 48081 8410 32024 32045 47221 47221 0.010254882809022092 VASKLEHTA 9 Unmodified _VASKLEHTA_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7237854003906 2 478.263999 954.513445 0.55152 0.00026377 -0.71018 -0.00033966 -0.15867 -7.5885E-05 478.2636344498062 30.372 0.49636 28.298 28.074 28.571 -2.0743 24 13 2 0 0 0 0.57447 1 5159 5159 14.838 0.93222 1 3269200 48082 2240 32025 32046 47222 47222 0.034368834091424105 VASKYVANNL 10 Unmodified _VASKYVANNL_ 0 0 0 tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2012939453125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 155.55 1 155.55 155.05 156.05 0 0 0 0 0.22588 1 31185 31185 3.8763 0 1 48083 25891 32026 32047 47223 47223 0.046171279889904326 VASLEQLYVK 10 Unmodified _VASLEQLYVK_ 0 0 0 nc|ENSG00000120498|Q8IYF3|TEX11;ENSG00000120498|ENST00000374333|TEX11 nc|ENSG00000120498|Q8IYF3|TEX11 nc|ENSG00000120498|Q8IYF3|TEX11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3346557617188 2 575.329339 1148.64412 0.58612 0.00033721 -3.7916 -0.0021814 -3.2055 -0.0018442 575.3257822591646 44.8 1.1541 44.8 44.189 45.343 0 71 32 3 0 0 0 0.39316 2 8334 8287;8334 31.268 2.2547 1 7859900 48084 3136 32027 32048 47224;47225 47225 0.07574854337326542 VASLITVLLH 10 Unmodified _VASLITVLLH_ 0 0 0 ENSG00000159618|ENST00000349457|ADGRG5;ENST00000394361.8_1_16:57596005-57608989:+|nuORF ENSG00000159618|ENST00000349457|ADGRG5 ENSG00000159618|ENST00000349457|ADGRG5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2632446289062 2 533.336967 1064.65938 NaN NaN NaN NaN NaN NaN NaN 144.34 1 139.4 138.9 139.9 -4.9445 0 0 0 0.22588 1 27877 27877 3.9444 0.94915 1 48085 5213 32028 32049 47226 47226 0.1296376592517845 VASPDRHH 8 Unmodified _VASPDRHH_ 0 0 0 REV__ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant REV__ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2327575683594 2 459.730658 917.446762 -0.06764 -3.1096E-05 0.6462 0.00029708 0.57856 0.00026598 459.7309211953234 101.22 0.6356 97.059 96.766 97.402 -4.1594 37 17 3 0 0 0 0.58432 1 19927 19927 23.148 23.148 1 4096900 + 48086 19474 32029 32050 47227 47227 -0.015263073620985779 VASPDRHH 8 Unmodified _VASPDRHH_ 0 0 0 REV__ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant REV__ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 459.730658 917.446762 0.23378 0.00010747 0.29108 0.00013382 0.52486 0.00024129 459.73074411403906 96.987 0.63213 96.987 96.664 97.296 0 -0.11938 -0.00012018 NaN 23.148 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4635300 + 48087 19474 32029 32050 -0.015263073620985779 VASPDRHH 8 Unmodified _VASPDRHH_ 0 0 0 REV__ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant REV__ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.730658 917.446762 0.26715 0.00012282 0.33838 0.00015556 0.60553 0.00027838 459.73076966850294 101.48 0.68721 97.157 96.784 97.471 -4.3208 0.050338 -7.6693E-05 NaN 23.148 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 5684400 + 48088 19474 32029 32050 -0.015263073620985779 VASPDRHH 8 Unmodified _VASPDRHH_ 0 0 0 REV__ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant REV__ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 459.730658 917.446762 0.39031 0.00017944 0.40572 0.00018652 0.79603 0.00036596 459.7307574049874 101.21 0.66589 97.223 96.826 97.491 -3.9895 0.11646 -1.4774E-05 NaN 23.148 35 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3127900 + 48089 19474 32029 32050 -0.015263073620985779 VASPMPAE 8 Unmodified _VASPMPAE_ 0 0 0 REV__ENSG00000038219|ENST00000040738|BOD1L1;REV__BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant REV__ENSG00000038219|ENST00000040738|BOD1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 401.1936340332031 2 401.194196 800.37384 NaN NaN NaN NaN NaN NaN NaN 72.165 1 68.854 68.354 69.354 -3.3107 0 0 0 0.2074 1 14064 14064 19.439 4.8573 1 + 48090 14038;13201 32030 32051 47228 47228 -0.03433197199740334 VASPSGDY 8 Unmodified _VASPSGDY_ 0 0 0 ENSG00000042429|ENST00000251871|MED17 ENSG00000042429|ENST00000251871|MED17 ENSG00000042429|ENST00000251871|MED17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 398.18096923828125 2 398.179601 794.344648 NaN NaN NaN NaN NaN NaN NaN 82.054 1 78.366 77.866 78.866 -3.6879 0 0 0 0.21486 1 15643 15643 6.3541 0 1 48091 1201 32031 32052 47229 47229 -0.06075018224373707 VASPSQLTL 9 Unmodified _VASPSQLTL_ 0 0 0 REV__ENST00000372068.6_1_X:109388059-109416485:+|nuORF REV__ENST00000372068.6_1_X:109388059-109416485:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23876953125 2 458.260925 914.507297 0.12743 5.8395E-05 -0.12806 -5.8683E-05 -0.00062702 -2.8734E-07 458.26087736008634 122.13 0.53416 117.58 117.24 117.78 -4.5476 23 14 2 0 0 0 0.25702 1 24100 24100 34.102 0 1 1367500 + 48092 21019 32032 32053 47230 47230 0.04662365177614447 VASRQEGIF 9 Unmodified _VASRQEGIF_ 0 0 0 ENST00000507035.2_1_5:134374548-134375597:-|nuORF ENST00000507035.2_1_5:134374548-134375597:-|nuORF ENST00000507035.2_1_5:134374548-134375597:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.2372131347656 3 336.182058 1005.52434 NaN NaN NaN NaN NaN NaN NaN 84.075 1 80.467 79.967 80.967 -3.6079 0 0 0 0.23508 1 16435 16435 2.9952 0.26005 1 48093 10688 32033 32054 47231 47231 0.0218028578343592 VASSLNLPD 9 Unmodified _VASSLNLPD_ 0 0 0 REV__nc|ENSG00000204406|Q9P267|MBD5 REV__nc|ENSG00000204406|Q9P267|MBD5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.24200439453125 2 458.242732 914.470912 -0.10194 -4.6715E-05 -0.32747 -0.00015006 -0.42941 -0.00019677 458.24253316951814 46.591 0.69629 43.725 43.507 44.203 -2.8666 27 19 2 0 0 0 0.34411 1 8533 8533 29.082 3.6823 1 695000 + 48094 19532 32034 32055 47232 47232 0.010254882809135779 VASSLSSHK 9 Unmodified _VASSLSSHK_ 0 0 0 ENST00000274364.10_1_5:75936801-75936861:+|nuORF ENST00000274364.10_1_5:75936801-75936861:+|nuORF ENST00000274364.10_1_5:75936801-75936861:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.229248046875 2 458.248349 914.482145 NaN NaN NaN NaN NaN NaN NaN 71.733 1 68.484 67.984 68.984 -3.2492 0 0 0 0.19679 1 13972 13972 0.12781 0 1 48095 8425 32035 32056 47233 47233 0.02148310375048368 VASTAPDLKY 10 Unmodified _VASTAPDLKY_ 0 0 0 REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4 REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2859497070312 2 532.784764 1063.55498 0.036948 1.9685E-05 0.32898 0.00017527 0.36593 0.00019496 533.2862208879498 96.455 0.58418 96.455 96.116 96.7 0 24 16 2 0 0 0 0.32088 1 18897 18897 36.127 1.7253 1 2473000 + 48096 15729 32036 32057 47234 47234 0.025740193777892273 VASTAPDLKY 10 Unmodified _VASTAPDLKY_ 0 0 0 REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4 REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2858276367188 2 532.784764 1063.55498 -0.13096 -6.9771E-05 0.63691 0.00033934 0.50595 0.00026956 532.7849701266742 41.188 0.48838 38.554 38.257 38.745 -2.6348 20 13 2 0 0 0 0.63858 1 7654 7654 17.113 1.2657 1 1447000 + 48097 15729 32036 32057 47235 47235 0.025740193777892273 VASTAPDLKY 10 Unmodified _VASTAPDLKY_ 0 0 0 REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4 REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.784764 1063.55498 0.036948 1.9685E-05 0.32898 0.00017527 0.36593 0.00019496 533.2862208879498 96.455 0.58418 96.455 96.116 96.7 0 0.14595 -4.5756E-06 NaN 36.127 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2473000 + 48098 15729 32036 32057 0.025740193777892273 VATAGASS 8 Unmodified _VATAGASS_ 0 0 0 ENST00000199940.10_2_2:210288958-210372330:+|nuORF ENST00000199940.10_2_2:210288958-210372330:+|nuORF ENST00000199940.10_2_2:210288958-210372330:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.16973876953125 2 332.169036 662.323519 NaN NaN NaN NaN NaN NaN NaN 81.82 1 81.82 81.32 82.32 0 0 0 0 0.23749 1 15941 15941 0.12286 0 1 48099 8087 32037 32058 47236 47236 -0.021149835332266775 VATGTGTL 8 Unmodified _VATGTGTL_ 0 0 0 nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1 nc|ENSG00000039068|P12830-2|CDH1 nc|ENSG00000039068|P12830-2|CDH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20147705078125 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 87.361 1 87.361 86.861 87.861 0 0 0 0 0.21486 1 17053 17053 5.7604 0 1 48100 1186 32038 32059 47237 47237 0.015661625349594033 VATLRNSSAY 10 Unmodified _VATLRNSSAY_ 0 0 0 REV__PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant REV__PHLPP2|p.Q739Lfs*7|1|0.05|ENSG00000040199|chr16:71658296-71658297|-/CCTTA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2822875976562 2 541.285463 1080.55637 0.19942 0.00010794 -2.2861 -0.0012374 -2.0867 -0.0011295 541.7864630959176 151.89 1.277 146.66 145.97 147.25 -5.2365 41 35 2 0 0 0 0.61548 1 29412 29412 18.373 0.22675 1 6911800 + 48101 14046 32039 32060 47238 47238 0.019316534665676954 VATMEALPP 9 Unmodified _VATMEALPP_ 0 0 0 nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 89.488 1 85.444 84.944 85.944 -4.0443 0 0 0 0.1964 1 17050 17050 0.073264 0 1 48102 3921 32040 32061 47239 47239 0.00691620414204408 VATPTTSPST 10 Unmodified _VATPTTSPST_ 0 0 0 REV__ENST00000571051.5_1_17:78187969-78194112:-|nuORF REV__ENST00000571051.5_1_17:78187969-78194112:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2438049316406 2 481.245472 960.476391 -0.092127 -4.4336E-05 -0.177 -8.5182E-05 -0.26913 -0.00012952 481.24499023692965 78.767 0.59064 75.091 74.851 75.442 -3.676 19 16 2 0 0 0 0.28382 1 15069 15069 3.5927 0 1 735360 + 48103 23165 32041 32062 47240 47240 -0.005428329272717747 VATQKETNA 9 Unmodified _VATQKETNA_ 0 0 0 nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24755859375 2 481.251089 960.487624 0.08258 3.9742E-05 -0.81517 -0.0003923 -0.73259 -0.00035256 481.2505084892255 37.909 2.4506 37.909 36.887 39.338 0 134 69 4 0 0 0 0.31728 1 7151 7151 1.6919 0 1 99259000 48104 4181 32042 32063 47241 47241 0.005799891668516466 VATSFPLPP 9 Unmodified _VATSFPLPP_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1711120605469 3 310.176133 927.506569 NaN NaN NaN NaN NaN NaN NaN 49.489 1 46.491 45.991 46.991 -2.999 0 0 0 0.23508 1 9051 9051 2.9952 0 1 + 48105 16781 32043 32064 47242 47242 0.03991570528569355 VATTAAALYSP 11 Unmodified _VATTAAALYSP_ 0 0 0 REV__ENSG00000108784|ENST00000225927|NAGLU REV__ENSG00000108784|ENST00000225927|NAGLU MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2709350585938 2 532.784764 1063.55498 0.67137 0.0003577 0.17443 9.2936E-05 0.84581 0.00045063 532.7849713819849 100.56 0.41316 96.259 96.021 96.434 -4.297 22 11 3 0 0 0 0.85028 1 19186 19186 8.1555 0 1 1954400 + 48106 15137 32044 32065 47243 47243 0.025740193778119647 VAVDMMCS 8 Carbamidomethyl (C),Oxidation (M) _VAVDM(Oxidation (M))MC(Carbamidomethyl (C))S_ VAVDMMC(1)S VAVDM(0.5)M(0.5)CS VAVDMMC(40)S VAVDM(0)M(0)CS 0 1 1 ENSG00000108557|ENST00000353383|RAI1 ENSG00000108557|ENST00000353383|RAI1 ENSG00000108557|ENST00000353383|RAI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2560119628906 2 464.682281 927.35001 0.48404 0.00022493 -0.92106 -0.000428 -0.43702 -0.00020307 464.6817702374123 46.692 1.1535 46.692 46.107 47.26 0 78 32 4 0 0 0 0.25036 1 8800 8800 40.449 15.049 2 13808000 48107 2482 32045 32066 47244 47244 3 28;29 -0.11657122020073984 VAVDMMCS 8 Carbamidomethyl (C),Oxidation (M) _VAVDM(Oxidation (M))MC(Carbamidomethyl (C))S_ VAVDMMC(1)S VAVDM(0.5)M(0.5)CS VAVDMMC(50)S VAVDM(0)M(0)CS 0 1 1 ENSG00000108557|ENST00000353383|RAI1 ENSG00000108557|ENST00000353383|RAI1 ENSG00000108557|ENST00000353383|RAI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2559509277344 2 464.682281 927.35001 -0.0731 -3.3968E-05 -0.4014 -0.00018653 -0.4745 -0.00022049 464.68206177244207 49.764 1.0702 46.758 46.207 47.277 -3.0068 78 30 3 0 0 0 0.40947 1 9093 9093 49.669 22.785 2 25714000 48108 2482 32045 32066 47245 47245 3 28;29 -0.11657122020073984 VAVEALGQQ 9 Unmodified _VAVEALGQQ_ 0 0 0 REV__ENSG00000154134|ENST00000397801|ROBO3 REV__ENSG00000154134|ENST00000397801|ROBO3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22528076171875 2 457.750724 913.486896 0.56207 0.00025729 -0.27767 -0.0001271 0.2844 0.00013018 457.7505550794803 77.203 0.97665 77.203 76.658 77.634 0 65 27 3 0 0 0 0.069289 2 14916 14916;14934 4.7159 3.6508 1 15229000 + 48109 17168 32046 32067 47246;47247 47246 0.02669194517818596 VAVERKPY 8 Unmodified _VAVERKPY_ 0 0 0 REV__tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1 REV__tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7722473144531 2 481.276909 960.539266 0.2237 0.00010766 0.46101 0.00022187 0.68471 0.00032953 481.27699646858287 85.042 0.65925 81.133 80.734 81.393 -3.9093 26 18 2 0 0 0 8448 1 16198 16198 6.2058 4.4635 1 1728200 + 48110 25179 32047 32068 47248 47248 0.05741777651417124 VAVETHTI 8 Unmodified _VAVETHTI_ 0 0 0 GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant;ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1 GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 435.24652099609375 2 435.239993 868.465432 -0.26497 -0.00011533 -0.012044 -5.2419E-06 -0.27702 -0.00012057 435.2398588257516 50.169 0.63185 47.288 46.941 47.572 -2.8811 34 17 3 0 0 0 8448 1 9521 9521 1.7423 1.0609 1 1575300 48111 5331 32048 32069 47249 47249 0.025938094890989305 VAVETHTI 8 Unmodified _VAVETHTI_ 0 0 0 GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant;ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1 GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 435.239993 868.465432 0.50731 0.0002208 -0.66537 -0.0002896 -0.15806 -6.8795E-05 435.23968143608687 47.463 0.56051 47.463 47.226 47.786 0 0.15503 -0.00035431 NaN 1.7423 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1365000 48112 5331 32048 32069 0.025938094890989305 VAVETHTI 8 Unmodified _VAVETHTI_ 0 0 0 GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant;ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1 GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 435.239993 868.465432 -0.00086469 -3.7635E-07 -0.0094336 -4.1059E-06 -0.010298 -4.4822E-06 435.23982692336426 50.253 0.70781 47.208 46.857 47.565 -3.0453 -0.099734 0.00021667 NaN 1.7423 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2369700 48113 5331 32048 32069 0.025938094890989305 VAVETHTI 8 Unmodified _VAVETHTI_ 0 0 0 GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant;ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1 GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 435.239993 868.465432 -0.26122 -0.00011369 -0.17473 -7.6049E-05 -0.43595 -0.00018974 435.2398306011062 50.279 0.60971 47.272 46.941 47.551 -3.0068 -0.035871 7.2783E-05 NaN 1.7423 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1362500 48114 5331 32048 32069 0.025938094890989305 VAVHIRES 8 Unmodified _VAVHIRES_ 0 0 0 REV__nc|ENSG00000139436|Q14161-11|GIT2 REV__nc|ENSG00000139436|Q14161-11|GIT2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.0399169921875 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 46.129 1 43.262 42.762 43.762 -2.8666 0 0 0 0.21486 1 8390 8390 0.45834 0 1 + 48115 16517 32049 32070 47250 47250 0.044843204745689036 VAVKDQPRKP 10 Unmodified _VAVKDQPRKP_ 0 0 0 REV__ENSG00000122729|ENST00000309951|ACO1 REV__ENSG00000122729|ENST00000309951|ACO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 380.8884582519531 3 379.89614 1136.66659 -0.30089 -0.00011431 0.64913 0.0002466 0.34824 0.0001323 379.89633950759253 43.724 0.55251 40.933 40.668 41.22 -2.79 40 15 3 0 0 0 0.52813 1 8229 8229 0.20733 0 1 5447500 + 48116 12919 32050 32071 47251 47251 0.10372498525589435 VAVNDEGIV 9 Unmodified _VAVNDEGIV_ 0 0 0 REV__nc|ENSG00000157036|Q9Y2C4-2|EXOG REV__nc|ENSG00000157036|Q9Y2C4-2|EXOG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22906494140625 2 458.242732 914.470912 -0.12855 -5.8908E-05 -0.052274 -2.3954E-05 -0.18083 -8.2863E-05 458.24256223255327 46.483 0.66446 43.642 43.241 43.906 -2.8409 29 18 2 0 0 0 0.25183 1 8749 8749 34.402 2.0962 1 1519700 + 48117 17277 32051 32072 47252 47252 0.010254882809022092 VAVRRLTH 8 Unmodified _VAVRRLTH_ 0 0 0 REV__KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant REV__KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.03948974609375 3 317.866404 950.577383 -0.50016 -0.00015899 0.28031 8.9101E-05 -0.21985 -6.9884E-05 317.8664407967928 20.662 0.4624 20.662 20.423 20.885 0 28 12 3 0 0 0 1.0115 1 3415 3415 6.7232 2.7788 1 3753700 + 48118 19317 32052 32073 47253 47253 0.10011708356751114 VAVRRLTH 8 Unmodified _VAVRRLTH_ 0 0 0 REV__KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant REV__KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 317.866404 950.577383 0.31769 0.00010098 -0.50423 -0.00016028 -0.18653 -5.9293E-05 317.86623224549544 22.165 0.42138 20.691 20.484 20.905 -1.4742 0.029737 -0.00041156 NaN 6.7232 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2235200 + 48119 19317 32052 32073 0.10011708356751114 VAVRRLTH 8 Unmodified _VAVRRLTH_ 0 0 0 REV__KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant REV__KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 317.866404 950.577383 -0.13653 -4.3397E-05 0.00097934 3.113E-07 -0.13555 -4.3086E-05 317.8663596465145 22.084 0.34206 20.631 20.458 20.801 -1.4535 -0.03029 7.0206E-05 NaN 6.7232 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1976300 + 48120 19317 32052 32073 0.10011708356751114 VAVSSGTG 8 Unmodified _VAVSSGTG_ 0 0 0 REV__ENSG00000120341|ENST00000308284|SEC16B REV__ENSG00000120341|ENST00000308284|SEC16B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 339.1907653808594 2 339.176861 676.339169 NaN NaN NaN NaN NaN NaN NaN 37.527 1 35.19 34.69 35.69 -2.3375 0 0 0 0.23749 1 6647 6647 0.12286 0 1 + 48121 15620 32053 32074 47254 47254 -0.011946970161716308 VAVTVSASAT 10 Unmodified _VAVTVSASAT_ 0 0 0 REV__PTCH1|p.H1382Y|1|0.4|ENSG00000185920|chr9:95447112-95447112|G/A|missense_variant REV__PTCH1|p.H1382Y|1|0.4|ENSG00000185920|chr9:95447112-95447112|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7517395019531 2 453.250557 904.486562 -0.17771 -8.0547E-05 -0.31987 -0.00014498 -0.49758 -0.00022553 453.2503585784618 58.639 0.66458 55.729 55.337 56.001 -2.9105 43 18 3 0 0 0 0.41835 1 11210 11210 0.84494 0.57955 1 4659300 + 48122 18997 32054 32075 47255 47255 0.030497747979552514 VAVVLLLLGV 10 Unmodified _VAVVLLLLGV_ 0 0 0 REV__BCAM|p.G576Afs*20|1|0.34|ENSG00000187244|chr19:44819686-44819686|G/-|frameshift_variant REV__BCAM|p.G576Afs*20|1|0.34|ENSG00000187244|chr19:44819686-44819686|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 498.28082275390625 2 498.346803 994.679054 NaN NaN NaN NaN NaN NaN NaN 144.63 1 139.57 139.07 140.07 -5.0671 0 0 0 2.8426 1 27912 27912 0.69767 0.55777 1 + 48123 13183 32055 32076 47256 47256 0.18150141935961983 VAVWLCGTA 9 Unmodified _VAVWLCGTA_ 0 0 0 ENST00000535028.5_1_9:140000303-140001810:+|nuORF;ENST00000480100.3_1_9:140000303-140000768:+|nuORF ENST00000535028.5_1_9:140000303-140001810:+|nuORF ENST00000535028.5_1_9:140000303-140001810:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2370910644531 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 24.417 1 22.883 22.383 23.383 -1.5342 0 0 0 0.19638 1 3975 3975 1.6919 0 1 48124 11013 32056 32077 47257 47257 0.0008305747962822352 VAVYTICF 8 Unmodified _VAVYTICF_ 0 0 0 ENSG00000162881|ENST00000378661|OXER1 ENSG00000162881|ENST00000378661|OXER1 ENSG00000162881|ENST00000378661|OXER1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2245788574219 2 458.235864 914.457176 -0.01564 -7.1666E-06 3.6206 0.0016591 3.6049 0.0016519 458.23794487284005 50.159 0.19996 47.16 47.071 47.271 -2.999 8 5 2 0 0 0 0.6199 2 9179 9179;9187 20.871 0 1 528430 48125 5376 32057 32078 47258;47259 47258 -0.0034746075187968017 VAVYTICF 8 Unmodified _VAVYTICF_ 0 0 0 ENSG00000162881|ENST00000378661|OXER1 ENSG00000162881|ENST00000378661|OXER1 ENSG00000162881|ENST00000378661|OXER1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2372741699219 2 458.235864 914.457176 NaN NaN NaN NaN NaN NaN NaN 49.876 1 46.877 46.377 47.377 -2.999 0 0 0 0.21323 1 9123 9123 14.582 0 1 48126 5376 32057 32078 47260 47260 -0.0034746075187968017 VAWAQARL 8 Unmodified _VAWAQARL_ 0 0 0 ENSG00000140986|ENST00000268661|RPL3L ENSG00000140986|ENST00000268661|RPL3L ENSG00000140986|ENST00000268661|RPL3L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2374267578125 2 457.763969 913.513385 NaN NaN NaN NaN NaN NaN NaN 119.04 1 119.04 118.54 119.54 0 0 0 0 0.21181 1 23448 23448 15.768 1.1865 1 48127 4337 32058 32079 47261 47261 0.05316928199795257 VAWCIRYKKWM 11 Unmodified _VAWCIRYKKWM_ 0 0 0 REV__ENST00000277141.10_2_9:88923435-88923504:-|nuORF REV__ENST00000277141.10_2_9:88923435-88923504:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.38818359375 2 742.388685 1482.76282 NaN NaN NaN NaN NaN NaN NaN 143.35 1 138.45 137.95 138.95 -4.8982 0 0 0 0.23634 1 27669 27669 3.2813 1.7994 1 + 48128 20296 32059 32080 47262 47262 0.04074606769654565 VAWHVGTE 8 Unmodified _VAWHVGTE_ 0 0 0 ENSG00000156869|ENST00000646001|FRRS1;nc|ENSG00000156869|Q6ZNA5-2|FRRS1 ENSG00000156869|ENST00000646001|FRRS1 ENSG00000156869|ENST00000646001|FRRS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 300.15234375 3 300.152099 897.434466 NaN NaN NaN NaN NaN NaN NaN 116.7 1 112.12 111.62 112.62 -4.5815 0 0 0 0.21486 1 22394 22394 0.45834 0 1 48129 5106 32060 32081 47263 47263 -0.018353438251324405 VAWHVGTE 8 Unmodified _VAWHVGTE_ 0 0 0 ENSG00000156869|ENST00000646001|FRRS1;nc|ENSG00000156869|Q6ZNA5-2|FRRS1 ENSG00000156869|ENST00000646001|FRRS1 ENSG00000156869|ENST00000646001|FRRS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 300.152099609375 3 300.152099 897.434466 NaN NaN NaN NaN NaN NaN NaN 116.35 1 112 111.5 112.5 -4.3585 0 0 0 0.21486 1 22400 22400 1.8442 0 1 48130 5106 32060 32081 47264 47264 -0.018353438251324405 VAWPLRSSR 9 Unmodified _VAWPLRSSR_ 0 0 0 REV__ENSG00000143653|ENST00000366510|SCCPDH REV__ENSG00000143653|ENST00000366510|SCCPDH MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5567321777344 3 357.873447 1070.59851 -0.43219 -0.00015467 -0.87718 -0.00031392 -1.3094 -0.00046859 357.87310862216975 17.54 0.51844 16.268 16.074 16.593 -1.2722 48 14 5 0 0 0 0.87836 1 2562 2562 5.7319 2.7366 1 28272000 + 48131 16744 32061 32082 47265 47265 0.06603673665608767 VAWPLRSSR 9 Unmodified _VAWPLRSSR_ 0 0 0 REV__ENSG00000143653|ENST00000366510|SCCPDH REV__ENSG00000143653|ENST00000366510|SCCPDH MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 357.873447 1070.59851 -0.33858 -0.00012117 -0.94133 -0.00033688 -1.2799 -0.00045805 357.87308966176636 16.387 0.44855 16.387 16.199 16.647 0 0.084926 -5.6215E-05 NaN 5.7319 39 12 4 NaN NaN NaN NaN 0 NaN NaN 0 23594000 + 48132 16744 32061 32082 0.06603673665608767 VAYKSPTY 8 Unmodified _VAYKSPTY_ 0 0 0 REV__nc|ENSG00000073737|Q9BPW9-4|DHRS9 REV__nc|ENSG00000073737|Q9BPW9-4|DHRS9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.651 1 75.651 75.151 76.151 0 0 0 0 0.21486 1 14697 14697 3.9444 0 1 + 48133 23949 32062 32083 47266 47266 0.00354693631857117 VAYLINTL 8 Unmodified _VAYLINTL_ 0 0 0 nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;ENST00000376135.5_1_2:204193204-204247972:+|nuORF;ENST00000494215.1_1_2:204193204-204231797:+|nuORF nc|ENSG00000138443|Q9NYB9|ABI2 nc|ENSG00000138443|Q9NYB9|ABI2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7685852050781 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 127.07 1 122.28 121.78 122.78 -4.7958 0 0 0 0.21486 1 24393 24393 5.7604 0 1 48134 4172 32063 32084 47267 47267 0.06567857045627079 VCALNVLST 9 Unmodified _VCALNVLST_ 0 0 0 ENSG00000104059|ENST00000261275|ENTREP2 ENSG00000104059|ENST00000261275|ENTREP2 ENSG00000104059|ENST00000261275|ENTREP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2474365234375 2 460.249503 918.484453 NaN NaN NaN NaN NaN NaN NaN 28.91 1 26.913 26.413 27.413 -1.9962 0 0 0 0.23508 1 4897 4897 12.532 0 1 48135 2215 32064 32085 47268 47268 0.021950227884985907 VCANTDAEKI 10 Unmodified _VCANTDAEKI_ 0 0 0 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant;ENSG00000089558|ENST00000264661|KCNH4 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2613525390625 2 532.258056 1062.50156 0.20885 0.00011116 -0.58092 -0.0003092 -0.37207 -0.00019804 532.257794703883 38.938 1.3695 36.533 35.913 37.282 -2.4049 87 38 3 0 0 0 0.68961 1 6928 6928 12.241 0.74595 1 4468200 48136 1763 32065 32086 47269 47269 -0.027191013963602018 VCAWALGGP 9 Unmodified _VCAWALGGP_ 0 0 0 nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179;GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant;GPR179|p.K1289Rfs*12|1|0.29|ENSG00000277399|chr17:38329703-38329703|T/-|frameshift_variant;GPR179|p.R1290Efs*59|1|0.25|ENSG00000277399|chr17:38329702-38329703|-/T|frameshift_variant;GPR179|p.A56Gfs*23|1|0.21|ENSG00000277399|chr17:38343623-38343624|-/C|frameshift_variant nc|ENSG00000277399|Q6PRD1|GPR179 nc|ENSG00000277399|Q6PRD1|GPR179 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2283935546875 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 39.438 1 39.438 38.938 39.938 0 0 0 0 0.1966 1 7321 7321 1.2148 0.588 1 48137 8036 32066 32087 47270 47270 -0.019854982088986617 VCEEMTYEE 9 Unmodified _VCEEMTYEE_ 0 0 0 nc|ENSG00000114268|Q16877-3|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF;nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1 nc|ENSG00000114268|Q16877-3|PFKFB4 nc|ENSG00000114268|Q16877-3|PFKFB4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.1433410644531 3 378.143952 1131.41003 NaN NaN NaN NaN NaN NaN NaN 179.61 1 179.61 179.11 180.11 0 0 0 0 0.23508 1 37209 37209 0.23584 0 1 48138 2780 32067 32088 47271 47271 -0.15042152875867032 VCFRLKGSNK 10 Unmodified _VCFRLKGSNK_ 0 0 0 nc|ENSG00000132437|P20711-4|DDC;nc|ENSG00000132437|P20711-3|DDC;ENSG00000132437|ENST00000444124|DDC nc|ENSG00000132437|P20711-4|DDC nc|ENSG00000132437|P20711-4|DDC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3203125 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 171.9 1 171.9 171.4 172.4 0 0 0 0 2.8426 1 35451 35451 0.20733 0 1 48139 3727 32068 32089 47272 47272 0.058808696194319054 VCFTLSFY 8 Unmodified _VCFTLSFY_ 0 0 0 REV__ENSG00000113302|ENST00000231228|IL12B REV__ENSG00000113302|ENST00000231228|IL12B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2636413574219 2 490.233322 978.45209 0.18393 9.0167E-05 -1.4198 -0.00069602 -1.2358 -0.00060585 490.2326044677955 34.421 0.78304 34.421 34.212 34.995 0 47 22 3 0 0 0 0.69085 1 6381 6381 15.768 0 1 1116400 + 48140 15335 32069 32090 47273 47273 -0.037997646145072395 VCFTLSFY 8 Unmodified _VCFTLSFY_ 0 0 0 REV__ENSG00000113302|ENST00000231228|IL12B REV__ENSG00000113302|ENST00000231228|IL12B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2656555175781 2 490.233322 978.45209 -0.30035 -0.00014724 -0.77375 -0.00037932 -1.0741 -0.00052656 490.2328696654196 36.769 1.1161 34.3 33.869 34.985 -2.4688 66 31 3 0 0 0 0.69085 1 6904 6904 15.768 0 1 1486800 + 48141 15335 32069 32090 47274 47274 -0.037997646145072395 VCHVTDFYP 9 Unmodified _VCHVTDFYP_ 0 0 0 HLA-DPB1|p.Q193Pfs*17|1|0.18|ENSG00000223865|chr6:33085156-33085157|-/C|frameshift_variant;HLA-DPB1|p.Q193Sfs*35|1|0.35|ENSG00000223865|chr6:33085157-33085157|C/-|frameshift_variant;ENSG00000223865|ENST00000418931|HLA-DPB1 HLA-DPB1|p.Q193Pfs*17|1|0.18|ENSG00000223865|chr6:33085156-33085157|-/C|frameshift_variant HLA-DPB1|p.Q193Pfs*17|1|0.18|ENSG00000223865|chr6:33085156-33085157|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2750854492188 2 540.744585 1079.47462 0.21044 0.0001138 -2.2888 -0.0012377 -2.0784 -0.0011239 540.7425620429151 148.41 0.17282 143.25 143.15 143.33 -5.1557 6 4 2 0 0 0 0.5464 1 28737 28737 0.073264 0 1 1562800 48142 7780 32070 32091 47275 47275 -0.061941652169025474 VCKEDGDGLK 10 Unmodified _VCKEDGDGLK_ 0 0 0 nc|ENSG00000241697|Q8IYR6-2|TMEFF1;ENSG00000241697|ENST00000374879|TMEFF1 nc|ENSG00000241697|Q8IYR6-2|TMEFF1 nc|ENSG00000241697|Q8IYR6-2|TMEFF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2608032226562 2 532.258056 1062.50156 0.1383 7.3609E-05 -0.56672 -0.00030164 -0.42843 -0.00022803 532.2578459813585 36.563 1.1221 36.563 36.07 37.192 0 75 31 3 0 0 0 0.68961 1 6755 6755 12.241 0 1 5402700 48143 7856 32071 32092 47276 47276 -0.027191013963602018 VCKFCGRH 8 Unmodified _VCKFCGRH_ 0 0 0 ENSG00000143867|ENST00000272223|OSR1 ENSG00000143867|ENST00000272223|OSR1 ENSG00000143867|ENST00000272223|OSR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1537170410156 3 317.15468 948.442211 NaN NaN NaN NaN NaN NaN NaN 13.815 1 12.605 12.105 13.105 -1.2106 0 0 0 0.21486 1 1780 1780 0 0 1 48144 4526 32072 32093 47277 47277 -0.034072311008685574 VCLLFSRWK 9 Unmodified _VCLLFSRWK_ 0 0 0 nc|nan|Q9GZU0-2|C6orf62;ENSG00000112308|ENST00000378119|C6orf62 nc|nan|Q9GZU0-2|C6orf62 nc|nan|Q9GZU0-2|C6orf62 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3200073242188 2 576.323337 1150.63212 NaN NaN NaN NaN NaN NaN NaN 137.65 1 137.65 137.15 138.15 0 0 0 0 0.19649 1 27306 27306 1.2148 0 1 48145 2687 32073 32094 47278 47278 0.06282959113150355 VCLLFSRWK 9 Unmodified _VCLLFSRWK_ 0 0 0 nc|nan|Q9GZU0-2|C6orf62;ENSG00000112308|ENST00000378119|C6orf62 nc|nan|Q9GZU0-2|C6orf62 nc|nan|Q9GZU0-2|C6orf62 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3240356445312 2 576.323337 1150.63212 NaN NaN NaN NaN NaN NaN NaN 171.22 1 166.3 165.8 166.8 -4.9149 0 0 0 0.19711 1 33885 33885 2.6312 2.223 1 48146 2687 32073 32094 47279 47279 0.06282959113150355 VCLLWGSSP 9 Unmodified _VCLLWGSSP_ 0 0 0 ENST00000300060.6_1_15:90349885-90349939:-|nuORF ENST00000300060.6_1_15:90349885-90349939:-|nuORF ENST00000300060.6_1_15:90349885-90349939:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2447509765625 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 32.411 1 30.181 29.681 30.681 -2.2305 0 0 0 0.19632 1 5905 5905 0.073264 0.043981 1 48147 8541 32074 32095 47280 47280 -0.007929598659302428 VCLTEISTTV 10 Unmodified _VCLTEISTTV_ 0 0 0 REV__ADRB2|p.A119T|1|0.35|ENSG00000169252|chr5:148827186-148827186|G/A|missense_variant REV__ADRB2|p.A119T|1|0.35|ENSG00000169252|chr5:148827186-148827186|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2767944335938 2 533.278457 1064.54236 NaN NaN NaN NaN NaN NaN NaN 155.63 1 150.34 149.84 150.84 -5.2854 0 0 0 2.8426 1 30186 30186 6.6304 0 1 + 48148 12971 32075 32096 47281 47281 0.012672399232542375 VCLVILENY 9 Unmodified _VCLVILENY_ 0 0 0 ENST00000262096.12_1_8:17014207-17053083:+|nuORF ENST00000262096.12_1_8:17014207-17053083:+|nuORF ENST00000262096.12_1_8:17014207-17053083:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2706298828125 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 134.99 1 130.17 129.67 130.67 -4.8175 0 0 0 0.19636 1 25989 25989 2.4985 2.3756 1 48149 8307 32076 32097 47282 47282 0.02792151511107477 VCMKNLCKR 9 Unmodified _VCMKNLCKR_ 0 0 0 REV__ENSG00000157119|ENST00000287777|KLHL40 REV__ENSG00000157119|ENST00000287777|KLHL40 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7852172851562 2 547.785207 1093.55586 NaN NaN NaN NaN NaN NaN NaN 143.77 1 138.71 138.21 139.21 -5.0532 0 0 0 0.19632 1 27719 27719 0.073264 0.071882 1 + 48150 17284 32077 32098 47283 47283 0.01282495949863005 VCNALALLQC 10 Unmodified _VCNALALLQC_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;RQCD1|p.E162Nfs*14|1|0.27|ENSG00000144580|chr2:218587638-218587639|AG/-|frameshift_variant;RQCD1|p.L119Cfs*29|5|0.39|ENSG00000144580|chr2:218584641-218584641|T/-|frameshift_variant nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69482421875 2 524.269912 1046.52527 0.5333 0.0002796 -1.0596 -0.00055553 -0.52633 -0.00027594 524.2692323577031 47.013 0.59896 47.013 46.661 47.26 0 25 16 2 0 0 0 1.1138 1 8887 8887 14.405 2.1647 1 2381700 48151 4561 32078 32099 47284 47284 0.0038704083644915954 VCNCGLISFSH 11 Unmodified _VCNCGLISFSH_ 0 0 0 REV__ENST00000465033.1_1_7:129098169-129100351:+|nuORF REV__ENST00000465033.1_1_7:129098169-129100351:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2647094726562 2 590.267901 1178.52125 NaN NaN NaN NaN NaN NaN NaN 135.77 1 135.77 135.27 136.27 0 0 0 0 0.22632 1 26894 26894 0.026206 0.026206 1 + 48152 21944 32079 32100 47285 47285 -0.06087048657263949 VCNTQYYWYDE 11 Unmodified _VCNTQYYWYDE_ 0 0 0 nc|ENSG00000182208|Q70IA6-2|MOB2;nc|ENSG00000182208|Q70IA6|MOB2;ENSG00000182208|ENST00000329957|MOB2 nc|ENSG00000182208|Q70IA6-2|MOB2 nc|ENSG00000182208|Q70IA6-2|MOB2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.384521484375 2 742.295367 1482.57618 NaN NaN NaN NaN NaN NaN NaN 166.05 1 161.07 160.57 161.57 -4.9811 0 0 0 0.22632 1 32510 32510 0.00056442 0.00056442 1 48153 6773 32080 32101 47286 47286 -0.14580383375664496 VCPRQAEA 8 Unmodified _VCPRQAEA_ 0 0 0 REV__PTCH2|p.L1169Cfs*85|1|0.14|ENSG00000117425|chr1:44822522-44822522|G/-|frameshift_variant REV__PTCH2|p.L1169Cfs*85|1|0.14|ENSG00000117425|chr1:44822522-44822522|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2279968261719 2 437.215995 872.417436 -0.33937 -0.00014838 -0.077454 -3.3864E-05 -0.41682 -0.00018224 437.21644635740506 81.758 0.34409 78.07 77.945 78.289 -3.6879 11 9 2 0 0 0 0.73936 1 15571 15571 8.5933 0 1 394760 + 48154 24524 32081 32102 47287 47287 -0.023875877026057424 VCQKGLPPR 9 Unmodified _VCQKGLPPR_ 0 0 0 ENST00000544935.5_1_7:589271-589664:-|nuORF ENST00000544935.5_1_7:589271-589664:-|nuORF ENST00000544935.5_1_7:589271-589664:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.9991149902344 3 333.1919 996.55387 -0.62962 -0.00020978 0.66848 0.00022273 0.038861 1.2948E-05 333.19204240480536 57.478 0.60688 54.3 54 54.607 -3.1776 32 16 3 0 0 0 0.88211 1 10738 10738 1.1933 0 1 1463700 48155 11114 32082 32103 47288 47288 0.055455265279192645 VCQKGLPPR 9 Unmodified _VCQKGLPPR_ 0 0 0 ENST00000544935.5_1_7:589271-589664:-|nuORF ENST00000544935.5_1_7:589271-589664:-|nuORF ENST00000544935.5_1_7:589271-589664:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 333.1919 996.55387 -0.48267 -0.00016082 0.26195 8.7279E-05 -0.22072 -7.3541E-05 333.1919217751492 54.544 0.5926 54.544 54.209 54.802 0 0.23045 -5.0718E-05 NaN 1.1933 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1146300 48156 11114 32082 32103 0.055455265279192645 VCQKGLPPR 9 Unmodified _VCQKGLPPR_ 0 0 0 ENST00000544935.5_1_7:589271-589664:-|nuORF ENST00000544935.5_1_7:589271-589664:-|nuORF ENST00000544935.5_1_7:589271-589664:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 333.1919 996.55387 -0.40478 -0.00013487 0.47214 0.00015731 0.067354 2.2442E-05 333.19200034360784 57.101 0.63042 54.207 53.888 54.519 -2.8944 -0.10726 0.00015938 NaN 1.1933 37 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2543500 48157 11114 32082 32103 0.055455265279192645 VCQKGLPPR 9 Unmodified _VCQKGLPPR_ 0 0 0 ENST00000544935.5_1_7:589271-589664:-|nuORF ENST00000544935.5_1_7:589271-589664:-|nuORF ENST00000544935.5_1_7:589271-589664:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 333.1919 996.55387 0.076863 2.561E-05 -0.14159 -4.7175E-05 -0.064722 -2.1565E-05 333.1918240135561 57.456 0.56707 54.205 53.936 54.503 -3.2517 -0.10934 -0.00045408 NaN 1.1933 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3478300 48158 11114 32082 32103 0.055455265279192645 VCQNLEKQ 8 Unmodified _VCQNLEKQ_ 0 0 0 GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant;GPR158|p.K1143Rfs*23|1|0.32|ENSG00000151025|chr10:25599048-25599048|A/-|frameshift_variant;ENSG00000151025|ENST00000376351|GPR158 GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2444763183594 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 20.695 1 18.974 18.474 19.474 -1.7211 0 0 0 0.23182 1 3197 3197 1.7423 0 1 48159 4846 32083 32104 47289 47289 -0.011950493596373235 VCRFPAVH 8 Unmodified _VCRFPAVH_ 0 0 0 ENST00000392715.6_1_14:103801228-103801417:+|nuORF ENST00000392715.6_1_14:103801228-103801417:+|nuORF ENST00000392715.6_1_14:103801228-103801417:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649169921875 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 125.01 1 125.01 124.51 125.51 0 0 0 0 0.23899 1 24653 24653 1.3295 0 1 48160 9382 32084 32105 47290 47290 0.008252992936263581 VCRGAGQA 8 Unmodified _VCRGAGQA_ 0 0 0 ENST00000577083.1_1_16:4493044-4497084:+|nuORF;nc|ENSG00000103423|Q96EY1-3|DNAJA3;nc|ENSG00000103423|Q96EY1-2|DNAJA3;ENSG00000103423|ENST00000262375|DNAJA3 ENST00000577083.1_1_16:4493044-4497084:+|nuORF ENST00000577083.1_1_16:4493044-4497084:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2099304199219 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 102.06 1 102.06 101.56 102.56 0 0 0 0 0.23749 1 20043 20043 0.12286 0 1 48161 2190 32085 32106 47291 47291 -0.024761260455534284 VCVCCGGL 8 Unmodified _VCVCCGGL_ 0 0 0 REV__ITGA7|p.A398Cfs*25|1|0.32|ENSG00000135424|chr12:55698516-55698517|-/C|frameshift_variant REV__ITGA7|p.A398Cfs*25|1|0.32|ENSG00000135424|chr12:55698516-55698517|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 377.17120361328125 2 377.158245 752.301937 NaN NaN NaN NaN NaN NaN NaN 65.625 1 62.342 61.842 62.842 -3.2832 0 0 0 0.2396 1 12342 12342 0.0082765 0 1 + 48162 23678 32086 32107 47292 47292 -0.08412151149457259 VCVGWIWV 8 Unmodified _VCVGWIWV_ 0 0 0 ENST00000484787.1_1_6:31602529-31603076:+|nuORF ENST00000484787.1_1_6:31602529-31603076:+|nuORF ENST00000484787.1_1_6:31602529-31603076:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2538757324219 2 481.251849 960.489145 NaN NaN NaN NaN NaN NaN NaN 77.946 1 74.483 73.983 74.983 -3.4633 0 0 0 0.21022 1 15220 15220 17.087 4.0441 1 48163 10434 32087 32108 47293 47293 0.007319517219116278 VCVNCKDCFVM 11 Unmodified _VCVNCKDCFVM_ 0 0 0 REV__ENSG00000102221|ENST00000614628|JADE3;REV__nc|ENSG00000043143|Q9NQC1-3|JADE2 REV__ENSG00000102221|ENST00000614628|JADE3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7659912109375 2 630.765822 1259.51709 NaN NaN NaN NaN NaN NaN NaN 9.4747 1 8.44 7.94 8.94 -1.0347 0 0 0 0.23698 1 970 970 0 0 1 + 48164 14828;14054 32088 32109 47294 47294 -0.10228597466857536 VCVSNINR 8 Unmodified _VCVSNINR_ 0 0 0 ENSG00000230268|ENST00000473520|SSU72L6 ENSG00000230268|ENST00000473520|SSU72L6 ENSG00000230268|ENST00000473520|SSU72L6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.1595153808594 3 302.160488 903.459635 NaN NaN NaN NaN NaN NaN NaN 6.7234 1 5.7085 5.2085 6.2085 -1.0148 0 0 0 0.21486 1 470 470 0.45834 0 1 48165 7804 32089 32110 47295 47295 0.004043877057711143 VDASSAILGP 10 Unmodified _VDASSAILGP_ 0 0 0 REV__CES2|p.Q491Sfs*27|1|0.27|ENSG00000172831|chr16:66942242-66942242|T/-|frameshift_variant REV__CES2|p.Q491Sfs*27|1|0.27|ENSG00000172831|chr16:66942242-66942242|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2401428222656 2 465.250557 928.486562 0.15128 7.0383E-05 -0.24554 -0.00011424 -0.094264 -4.3856E-05 465.2504925341325 31.323 0.56074 31.323 31.04 31.6 0 22 15 2 0 0 0 0.45952 2 5659 5659;5675 26.884 1.4843 1 851050 + 48166 13385 32090 32111 47296;47297 47296 0.019457747979686246 VDCFFHNIS 9 Unmodified _VDCFFHNIS_ 0 0 0 REV__ENSG00000181273|ENST00000326855|OR5AK2 REV__ENSG00000181273|ENST00000326855|OR5AK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2783813476562 2 541.242209 1080.46987 -0.081532 -4.4129E-05 -3.1694 -0.0017154 -3.251 -0.0017596 541.241262886125 39.138 0.9471 36.589 36.088 37.035 -2.5491 50 26 3 0 0 0 0.52396 1 7327 7327 18.146 5.9057 1 1725800 + 48167 18725 32091 32112 47298 47298 -0.06715049359650038 VDCFFHNIS 9 Unmodified _VDCFFHNIS_ 0 0 0 REV__ENSG00000181273|ENST00000326855|OR5AK2 REV__ENSG00000181273|ENST00000326855|OR5AK2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.242209 1080.46987 -0.081532 -4.4129E-05 -3.1694 -0.0017154 -3.251 -0.0017596 541.241262886125 39.138 0.9471 36.589 36.088 37.035 -2.5491 -0.14367 0.0021006 NaN 18.146 50 26 3 NaN NaN NaN NaN 0 NaN NaN 0 1725800 + 48168 18725 32091 32112 -0.06715049359650038 VDCGRFHK 8 Unmodified _VDCGRFHK_ 0 0 0 REV__ENST00000286298.4_1_5:149357505-149357733:+|nuORF REV__ENST00000286298.4_1_5:149357505-149357733:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23919677734375 2 481.237261 960.45997 NaN NaN NaN NaN NaN NaN NaN 93.461 1 89.47 88.97 89.97 -3.9907 0 0 0 0.23366 1 18307 18307 0.0082765 0 1 + 48169 20331 32092 32113 47299 47299 -0.02184192574361532 VDEAKFTER 9 Unmodified _VDEAKFTER_ 0 0 0 REV__ANKRD30B|p.D965Ifs*30|3|0.08|ENSG00000180777|chr18:14848778-14848778|A/-|frameshift_variant REV__ANKRD30B|p.D965Ifs*30|3|0.08|ENSG00000180777|chr18:14848778-14848778|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7783203125 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 166.42 1 166.42 165.92 166.92 0 0 0 0 0.23508 1 33899 33899 10.074 0 1 + 48170 13060 32093 32114 47300 47300 -0.0026405277033063612 VDEDNCKEE 9 Unmodified _VDEDNCKEE_ 0 0 0 CASP8AP2|p.Q1768P|1|0.34|ENSG00000118412|chr6:89868593-89868593|A/C|missense_variant;CASP8AP2|p.D1810Mfs*3|1|0.43|ENSG00000118412|chr6:89868711-89868711|A/-|frameshift_variant;CASP8AP2|p.N1917Kfs*4|1|0.24|ENSG00000118412|chr6:89869034-89869035|-/A|frameshift_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2 CASP8AP2|p.Q1768P|1|0.34|ENSG00000118412|chr6:89868593-89868593|A/C|missense_variant CASP8AP2|p.Q1768P|1|0.34|ENSG00000118412|chr6:89868593-89868593|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2159729003906 3 360.809849 1079.40772 -0.15915 -5.7422E-05 -0.42867 -0.00015467 -0.58781 -0.00021209 360.8097089883308 126.52 0.63658 121.9 121.7 122.33 -4.6172 25 17 2 0 0 0 0.88111 1 24956 24956 0.77653 0 1 1698100 48171 398 32094 32115 47301 47301 -0.12880865289298526 VDEEITYDYK 10 Unmodified _VDEEITYDYK_ 0 0 0 ENSG00000099381|ENST00000262519|SETD1A ENSG00000099381|ENST00000262519|SETD1A ENSG00000099381|ENST00000262519|SETD1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2431640625 3 425.531081 1273.57141 -0.21827 -9.2883E-05 -3.7046 -0.0015764 -3.9229 -0.0016693 425.52826775872524 21.354 0.1005 19.969 19.902 20.002 -1.3847 4 2 2 0 0 0 0.91149 1 3357 3357 8.4443 1.3426 1 140730 48172 1892 32095 32116 47302 47302 -0.05442944246783554 VDELPVLNGS 10 Unmodified _VDELPVLNGS_ 0 0 0 REV__ENSG00000102699|ENST00000381989|PARP4 REV__ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2760620117188 2 521.774396 1041.53424 -0.33044 -0.00017242 1.4445 0.0007537 1.114 0.00058128 521.7750362951718 69.909 0.52771 66.73 66.437 66.965 -3.1796 17 14 2 0 0 0 0.20972 1 13605 13605 43.772 3.8227 1 1653200 + 48173 14845 32096 32117 47303 47303 0.015134289981460824 VDELPVLNGS 10 Unmodified _VDELPVLNGS_ 0 0 0 REV__ENSG00000102699|ENST00000381989|PARP4 REV__ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2764282226562 2 521.774396 1041.53424 -0.34691 -0.00018101 0.77047 0.00040201 0.42356 0.000221 521.7747817117487 70.394 0.39163 66.814 66.591 66.982 -3.5798 17 10 2 0 0 0 0.13246 1 13271 13271 51.63 7.7715 1 1331300 + 48174 14845 32096 32117 47304 47304 0.015134289981460824 VDEVSPTPP 9 Unmodified _VDEVSPTPP_ 0 0 0 nc|ENSG00000140538|Q16288-5|NTRK3;nc|ENSG00000140538|Q16288-4|NTRK3 nc|ENSG00000140538|Q16288-5|NTRK3 nc|ENSG00000140538|Q16288-5|NTRK3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1598205566406 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 95.647 1 91.455 90.955 91.955 -4.1911 0 0 0 0.23508 1 18255 18255 1.1933 0.23107 1 48175 12357 32097 32118 47305 47305 -0.017222179560008044 VDFLGRATT 9 Unmodified _VDFLGRATT_ 0 0 0 ENSG00000168065|ENST00000301891|SLC22A11 ENSG00000168065|ENST00000301891|SLC22A11 ENSG00000168065|ENST00000301891|SLC22A11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2644348144531 2 490.263999 978.513445 0.17497 8.5784E-05 0.35871 0.00017586 0.53368 0.00026164 490.26396477223466 59.697 1.4825 56.384 55.742 57.224 -3.3139 148 41 6 0 0 0 0.57447 1 11235 11235 14.838 2.3067 1 37594000 48176 5877 32098 32119 47306 47306 0.023328834091330464 VDGALTKLY 9 Unmodified _VDGALTKLY_ 0 0 0 REV__ENST00000548539.1_1_12:110929849-110934008:-|nuORF REV__ENST00000548539.1_1_12:110929849-110934008:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26531982421875 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 53.274 1 50.187 49.687 50.687 -3.0876 0 0 0 0.23508 1 9804 9804 10.824 2.9138 1 + 48177 15234 32099 32120 47307 47307 0.048469382116991255 VDGVSKLYY 9 Unmodified _VDGVSKLYY_ 0 0 0 tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1 tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1 tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2774047851562 2 522.274032 1042.53351 NaN NaN NaN NaN NaN NaN NaN 70.209 1 66.742 66.242 67.242 -3.467 0 0 0 0.081239 1 13294 13294 41.84 5.7954 1 48178 26320 32100 32121 47308 47308 0.013946343490943036 VDGYEKVIG 9 Unmodified _VDGYEKVIG_ 0 0 0 REV__nc|ENSG00000170615|P58743-2|SLC26A5 REV__nc|ENSG00000170615|P58743-2|SLC26A5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26861572265625 2 490.258382 978.502212 -0.010564 -5.179E-06 0.031898 1.5638E-05 0.021334 1.0459E-05 490.25857035332103 62.706 0.48831 59.467 59.173 59.661 -3.2395 21 13 3 0 0 0 0.34411 2 11733 11733;11757 29.082 3.6823 1 1353700 + 48179 18171 32101 32122 47309;47310 47309 0.012100613149982564 VDHAVLEDF 9 Unmodified _VDHAVLEDF_ 0 0 0 REV__ENST00000444527.2_1_8:56366358-56367090:-|nuORF REV__ENST00000444527.2_1_8:56366358-56367090:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27197265625 2 522.753464 1043.49238 -0.091867 -4.8024E-05 -0.42869 -0.0002241 -0.52056 -0.00027213 522.7535107362181 69.136 0.7731 69.136 68.648 69.421 0 36 21 3 0 0 0 0.8319 1 13321 13321 12.532 4.6214 1 3700700 + 48180 21738 32102 32123 47311 47311 -0.027631266903881624 VDHSSPKD 8 Unmodified _VDHSSPKD_ 0 0 0 REV__ENSG00000124177|ENST00000373233|CHD6 REV__ENSG00000124177|ENST00000373233|CHD6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 885.4125366210938 1 884.410837 883.40356 0.57448 0.00050807 -0.24968 -0.00022082 0.3248 0.00028725 884.4108856200473 26.421 0.47764 26.421 26.259 26.737 0 15 13 2 0 0 0 8448 1 4616 4616 0.62683 0 1 571070 + 48181 15756 32103 32124 47312 47312 -0.042805419300407266 VDHVTHSL 8 Unmodified _VDHVTHSL_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant;DNAH9|p.I3688Tfs*40|1|0.11|ENSG00000007174|chr17:11886915-11886924|ATCATGAACG/-|frameshift_variant;DNAH9|p.P2650Hfs*2|2|0.29|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant;DNAH9|p.K1203Rfs*6|1|0.24|ENSG00000007174|chr17:11680749-11680749|A/-|frameshift_variant nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.76214599609375 2 454.235242 906.45593 NaN NaN NaN NaN NaN NaN NaN 89.856 1 89.856 89.356 90.356 0 0 0 0 0.21404 1 17552 17552 18.135 0 1 48182 1016 32104 32125 47313 47313 -0.001039587964214661 VDISFGKY 8 Unmodified _VDISFGKY_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 76.533 1 76.533 76.033 77.033 0 0 0 0 0.2325 1 14875 14875 0.62683 0 1 + 48183 18798 32105 32126 47314 47314 0.003546936318684857 VDISFGKY 8 Unmodified _VDISFGKY_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16461181640625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 123.96 1 123.96 123.46 124.46 0 0 0 0 0.2386 1 24437 24437 0.0082765 0.0082765 1 + 48184 18798 32105 32126 47315 47315 0.003546936318684857 VDISFGKY 8 Unmodified _VDISFGKY_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 138.35 1 138.35 137.85 138.85 0 0 0 0 0.23881 1 27465 27465 0.063987 0 1 + 48185 18798 32105 32126 47316 47316 0.003546936318684857 VDISFGKY 8 Unmodified _VDISFGKY_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1642150878906 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 142.79 1 142.79 142.29 143.29 0 0 0 0 0.21486 1 28476 28476 1.6526 1.2519 1 + 48186 18798 32105 32126 47317 47317 0.003546936318684857 VDISFGKY 8 Unmodified _VDISFGKY_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1630554199219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 143.74 1 143.74 143.24 144.24 0 0 0 0 0.21486 1 28692 28692 1.4819 0 1 + 48187 18798 32105 32126 47318 47318 0.003546936318684857 VDISFGKY 8 Unmodified _VDISFGKY_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 99.627 1 95.358 94.858 95.858 -4.2695 0 0 0 0.23182 1 19046 19046 0.62683 0.50396 1 + 48188 18798 32105 32126 47319 47319 0.003546936318684857 VDKALLAT 8 Unmodified _VDKALLAT_ 0 0 0 CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.2463684082031 2 415.752736 829.490919 -0.17283 -7.1856E-05 0.93863 0.00039024 0.76579 0.00031838 415.75278180629994 66.014 0.589 62.966 62.71 63.299 -3.047 23 16 2 0 0 0 0.98792 1 12762 12762 14.582 0 1 1078500 48189 754 32106 32127 47320 47320 0.06935284011524345 VDKALLAT 8 Unmodified _VDKALLAT_ 0 0 0 CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 415.752736 829.490919 -0.26528 -0.00011029 1.9189 0.00079778 1.6536 0.00068748 415.75280035795896 63.217 0.8412 63.217 62.766 63.607 0 0.14514 0.00029968 NaN 14.582 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1266800 48190 754 32106 32127 0.06935284011524345 VDKALLAT 8 Unmodified _VDKALLAT_ 0 0 0 CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 415.752736 829.490919 0.24246 0.0001008 1.4033 0.00058343 1.6458 0.00068423 415.7526110258516 66.558 1.0406 63.062 62.453 63.494 -3.4965 -0.010547 -0.000129 NaN 14.582 35 29 2 NaN NaN NaN NaN 0 NaN NaN 0 969060 48191 754 32106 32127 0.06935284011524345 VDKEKAMIYEF 11 Unmodified _VDKEKAMIYEF_ 0 0 0 REV__ENSG00000122884|ENST00000394890|P4HA1 REV__ENSG00000122884|ENST00000394890|P4HA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2327575683594 3 458.232089 1371.67444 NaN NaN NaN NaN NaN NaN NaN 167.3 1 162.35 161.85 162.85 -4.948 0 0 0 0.22632 1 32896 32896 0.11104 0 1 + 48192 15707 32107 32128 47321 47321 0.0034684494021348655 VDKFKIDD 8 Unmodified _VDKFKIDD_ 0 0 0 REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1 REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2582702636719 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 90.62 1 90.62 90.12 91.12 0 0 0 0 0.21039 1 17705 17705 16.942 4.4107 1 + 48193 25256 32108 32129 47322 47322 0.012100613149868877 VDKHLLFPP 9 Unmodified _VDKHLLFPP_ 0 0 0 REV__ENST00000338785.7_1_21:38885923-38886019:+|nuORF REV__ENST00000338785.7_1_21:38885923-38886019:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2609252929688 2 533.30821 1064.60187 NaN NaN NaN NaN NaN NaN NaN 138.39 1 133.55 133.05 134.05 -4.84 0 0 0 0.23108 1 26669 26669 14.405 0.49933 1 + 48194 20686 32109 32130 47323 47323 0.07214923719629951 VDKIKVKI 8 Unmodified _VDKIKVKI_ 0 0 0 REV__tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1 REV__tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.8645935058594 3 314.883061 941.627353 NaN NaN NaN NaN NaN NaN NaN 178.95 1 178.95 178.45 179.45 0 0 0 0 0.21486 1 37067 37067 0.45834 0 1 + 48195 25268 32110 32131 47324 47324 0.15420398242031297 VDKKQLARK 9 Unmodified _VDKKQLARK_ 0 0 0 REV__nc|ENSG00000115761|Q9BSC4-2|NOL10 REV__nc|ENSG00000115761|Q9BSC4-2|NOL10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7942504882812 2 543.343115 1084.67168 NaN NaN NaN NaN NaN NaN NaN 166.27 1 161.48 160.98 161.98 -4.7898 0 0 0 0.23508 1 33384 33384 9.3831 1.473 1 + 48196 15449 32111 32132 47325 47325 0.1327280238822368 VDKNARLKV 9 Unmodified _VDKNARLKV_ 0 0 0 ENST00000479598.5_1_2:190437559-190445261:-|nuORF;SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant;ENSG00000138449|ENST00000261024|SLC40A1 ENST00000479598.5_1_2:190437559-190445261:-|nuORF ENST00000479598.5_1_2:190437559-190445261:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6967163085938 2 521.822015 1041.62948 -1.5568 -0.00081238 1.2388 0.00064645 -0.31798 -0.00016593 521.8226869276426 14.943 0.44831 13.732 13.583 14.031 -1.2106 35 12 4 0 0 0 0.6231 1 2033 2033 0.40827 0 1 16909000 48197 4174 32112 32133 47326 47326 0.11032826979840138 VDLAWARE 8 Unmodified _VDLAWARE_ 0 0 0 REV__GPT|p.L474Wfs*11|1|0.29|ENSG00000167701|chr8:144506923-144506923|C/-|frameshift_variant REV__GPT|p.L474Wfs*11|1|0.29|ENSG00000167701|chr8:144506923-144506923|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2527770996094 2 480.250892 958.48723 0.15756 7.5669E-05 -0.45829 -0.00022009 -0.30073 -0.00014443 480.25080993018423 61.838 0.79544 58.598 58.206 59.002 -3.2395 57 22 3 0 0 0 0.52597 1 11636 11636 26.884 5.137 1 4328600 + 48198 17958 32113 32134 47327 47327 0.006326142376565258 VDLAWARE 8 Unmodified _VDLAWARE_ 0 0 0 REV__GPT|p.L474Wfs*11|1|0.29|ENSG00000167701|chr8:144506923-144506923|C/-|frameshift_variant REV__GPT|p.L474Wfs*11|1|0.29|ENSG00000167701|chr8:144506923-144506923|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.250892 958.48723 0.15756 7.5669E-05 -0.45829 -0.00022009 -0.30073 -0.00014443 480.25080993018423 61.838 0.79544 58.598 58.206 59.002 -3.2395 -0.033454 -9.8163E-05 NaN 26.884 57 22 3 NaN NaN NaN NaN 0 NaN NaN 0 4328600 + 48199 17958 32113 32134 0.006326142376565258 VDLEGTPVV 9 Unmodified _VDLEGTPVV_ 0 0 0 nc|ENSG00000164694|Q4ZHG4-2|FNDC1;ENSG00000164694|ENST00000297267|FNDC1;FNDC1|p.T1443Nfs*81|2|0.16|ENSG00000164694|chr6:159239656-159239657|-/A|frameshift_variant;FNDC1|p.T1443Pfs*84|1|0.31|ENSG00000164694|chr6:159239657-159239657|A/-|frameshift_variant nc|ENSG00000164694|Q4ZHG4-2|FNDC1 nc|ENSG00000164694|Q4ZHG4-2|FNDC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 178 1 178 177.5 178.5 0 0 0 0 0.23508 1 36879 36879 2.7352 1.0826 1 48200 5563 32114 32135 47328 47328 0.024666589407161155 VDLNEAQFK 9 Unmodified _VDLNEAQFK_ 0 0 0 REV__PCDHGA10|p.G222Vfs*13|1|0.43|ENSG00000253846|chr5:141413836-141413836|G/-|frameshift_variant REV__PCDHGA10|p.G222Vfs*13|1|0.43|ENSG00000253846|chr5:141413836-141413836|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2791137695312 2 532.274564 1062.53457 0.44364 0.00023614 1.2149 0.00064668 1.6586 0.00088282 532.2742443321255 57.248 0.69681 54.058 53.723 54.42 -3.1895 49 19 3 0 0 0 0.44932 1 10598 10598 22.736 3.4793 1 3190000 + 48201 19841 32115 32136 47329 47329 0.0058084871798200766 VDLQDKAGAY 10 Unmodified _VDLQDKAGAY_ 0 0 0 REV__tr|U7T3S2|U7T3S2_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00516PE=4SV=1 REV__tr|U7T3S2|U7T3S2_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00516PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.278564453125 2 540.272021 1078.52949 0.27857 0.0001505 -0.34022 -0.00018381 -0.061646 -3.3306E-05 540.2718967068143 88.507 1.8171 84.757 84.189 86.006 -3.7501 166 51 5 0 0 0 0.23665 1 16854 16854 20.871 14.179 1 401310000 + 48202 25374 32116 32137 47330 47330 -0.0066345514460408594 VDLQRLHL 8 Unmodified _VDLQRLHL_ 0 0 0 nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;DDR1|p.P593Qfs*60|1|0.38|ENSG00000204580|chr6:30896770-30896770|C/-|frameshift_variant;DDR1|p.P483Rfs*170|1|0.29|ENSG00000204580|chr6:30894602-30894602|C/-|frameshift_variant;DDR1|p.G583Afs*70|1|0.31|ENSG00000204580|chr6:30896740-30896740|G/-|frameshift_variant;nc|ENSG00000204580|Q08345-4|DDR1;ENST00000431373.1_1_6:30853540-30859007:+|nuORF nc|ENSG00000204580|Q08345-2|DDR1 nc|ENSG00000204580|Q08345-2|DDR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.8766784667969 3 331.866181 992.576714 -0.41373 -0.0001373 0.17626 5.8495E-05 -0.23747 -7.8808E-05 331.8662154371755 71.767 1.0216 68.491 67.966 68.987 -3.2769 93 28 5 0 0 0 8448 1 13953 13953 29.841 7.1043 1 61150000 48203 7592 32117 32138 47331 47331 0.0801286891704649 VDLQSRWAA 9 Unmodified _VDLQSRWAA_ 0 0 0 FMO3|p.K416Sfs*72|1|0.39|ENSG00000007933|chr1:171116267-171116267|A/-|frameshift_variant;ENSG00000007933|ENST00000367755|FMO3 FMO3|p.K416Sfs*72|1|0.39|ENSG00000007933|chr1:171116267-171116267|A/-|frameshift_variant FMO3|p.K416Sfs*72|1|0.39|ENSG00000007933|chr1:171116267-171116267|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6972045898438 2 523.274898 1044.53524 -0.23191 -0.00012136 0.060112 3.1455E-05 -0.1718 -8.99E-05 523.2747193574362 59.418 0.52409 56.507 56.284 56.808 -2.9105 17 14 2 0 0 0 0.81703 1 11376 11376 10.074 3.8681 1 884970 48204 1030 32118 32139 47332 47332 0.014756881577113745 VDMDECFASY 10 Unmodified _VDMDECFASY_ 0 0 0 REV__ENST00000565793.5_1_15:79069566-79092863:-|nuORF REV__ENST00000565793.5_1_15:79069566-79092863:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2587280273438 2 590.220282 1178.42601 NaN NaN NaN NaN NaN NaN NaN 130.24 1 125.61 125.11 126.11 -4.6359 0 0 0 2.8426 1 25669 25669 0.26539 0.23918 1 + 48205 23115 32119 32140 47333 47333 -0.15606446638958005 VDMLKVGR 8 Unmodified _VDMLKVGR_ 0 0 0 REV__APOL1|p.T336M|1|0.32|ENSG00000100342|chr22:36265843-36265843|C/T|missense_variant REV__APOL1|p.T336M|1|0.32|ENSG00000100342|chr22:36265843-36265843|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 459.263671875 2 459.265487 916.516422 NaN NaN NaN NaN NaN NaN NaN 48.36 1 45.41 44.91 45.91 -2.9499 0 0 0 0.22934 1 8852 8852 0.12286 0 1 + 48206 13086 32120 32141 47334 47334 0.05482435262297258 VDNIDLRLE 9 Unmodified _VDNIDLRLE_ 0 0 0 REV__ENST00000370409.7_2_X:149102608-149105677:-|nuORF REV__ENST00000370409.7_2_X:149102608-149105677:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7781982421875 2 543.793121 1085.57169 0.50052 0.00027218 -0.41046 -0.00022321 0.090051 4.8969E-05 543.7928251287154 119.94 0.73326 115.41 115.08 115.82 -4.5221 55 20 3 0 0 0 0.25976 1 23595 23595 24.882 0 1 12619000 + 48207 20983 32121 32142 47335 47335 0.032325202637593975 VDPALALQDAQ 11 Unmodified _VDPALALQDAQ_ 0 0 0 nc|ENSG00000264230|Q5VT79-2|ANXA8L1;ENSG00000264230|ENST00000619162|ANXA8L1 nc|ENSG00000264230|Q5VT79-2|ANXA8L1 nc|ENSG00000264230|Q5VT79-2|ANXA8L1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 380.85516357421875 3 380.868027 1139.58225 NaN NaN NaN NaN NaN NaN NaN 9.1745 1 9.1745 8.6745 9.6745 0 0 0 0 0.23698 1 1033 1033 0 0 1 48208 7974 32122 32143 47336 47336 0.01804502918162143 VDPDAHPSP 9 Unmodified _VDPDAHPSP_ 0 0 0 AHSG|p.P278H|1|0.23|ENSG00000145192|chr3:186620659-186620659|C/A|missense_variant AHSG|p.P278H|1|0.23|ENSG00000145192|chr3:186620659-186620659|C/A|missense_variant AHSG|p.P278H|1|0.23|ENSG00000145192|chr3:186620659-186620659|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1466064453125 3 312.147013 933.41921 NaN NaN NaN NaN NaN NaN NaN 138.81 1 133.96 133.46 134.46 -4.8492 0 0 0 0.23508 1 26758 26758 0.26902 0 1 48209 106 32123 32144 47337 47337 -0.05016255413011095 VDPDKELSY 9 Unmodified _VDPDKELSY_ 0 0 0 ENSG00000129315|ENST00000261900|CCNT1;nc|ENSG00000129315|O60563-2|CCNT1 ENSG00000129315|ENST00000261900|CCNT1 ENSG00000129315|ENST00000261900|CCNT1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2734985351562 2 533.258579 1064.50261 -0.066345 -3.5379E-05 2.3407 0.0012482 2.2744 0.0012128 533.7616487392276 50.665 0.39146 47.784 47.536 47.927 -2.8816 16 10 2 0 0 0 0.71527 1 9608 9608 19.257 0 1 616750 48210 3561 32124 32145 47338 47338 -0.02706563755782554 VDPPVRHHS 9 Unmodified _VDPPVRHHS_ 0 0 0 nc|ENSG00000185585|Q68BL7-3|OLFML2A;nc|ENSG00000185585|Q68BL7-2|OLFML2A;ENSG00000185585|ENST00000373580|OLFML2A nc|ENSG00000185585|Q68BL7-3|OLFML2A nc|ENSG00000185585|Q68BL7-3|OLFML2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2730102539062 2 522.27269 1042.53083 NaN NaN NaN NaN NaN NaN NaN 166.1 1 166.1 165.6 166.6 0 0 0 0 0.23508 1 33791 33791 10.824 0.64053 1 48211 7000 32125 32146 47339 47339 0.01126223734809173 VDPQGPLK 8 Unmodified _VDPQGPLK_ 0 0 0 FCGBP-ACSS2|1|fusion;ENSG00000275395|ENST00000616721|FCGBP;nc|ENSG00000275395|Q9Y6R7|FCGBP;FCGBP|p.D1486N|1|0.09|ENSG00000275395|chr19:39902372-39902372|C/T|missense_variant FCGBP-ACSS2|1|fusion FCGBP-ACSS2|1|fusion MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.139892578125 2 427.242535 852.470518 -0.50383 -0.00021526 0.10681 4.5632E-05 -0.39703 -0.00016963 427.24254451098545 37.953 0.453 35.484 35.223 35.676 -2.4688 28 12 3 0 0 0 1.0147 1 6976 6976 5.2307 0 1 3531000 48212 8024 32126 32147 47340 47340 0.038381133517077615 VDPYPVNKY 9 Unmodified _VDPYPVNKY_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.771484375 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 75.282 1 71.649 71.149 72.149 -3.6337 0 0 0 0.23277 1 14309 14309 13.906 0 1 48213 6323 32127 32148 47341 47341 0.0013803672338781325 VDRAQQLTLV 10 Unmodified _VDRAQQLTLV_ 0 0 0 REV__ENST00000439964.1_1_2:64871847-64873778:+|nuORF REV__ENST00000439964.1_1_2:64871847-64873778:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 571.4844360351562 2 571.830037 1141.64552 0.48719 0.00027859 -0.63554 -0.00036342 -0.14834 -8.4828E-05 572.3307937324782 163.87 0.17087 158.81 158.69 158.86 -5.0648 5 4 2 0 0 0 1.1313 1 31918 31918 3.8763 0 1 2484800 + 48214 21700 32128 32149 47342 47342 0.08036488426091637 VDRYTPPL 8 Unmodified _VDRYTPPL_ 0 0 0 REV__ENSG00000067248|ENST00000251636|DHX29 REV__ENSG00000067248|ENST00000251636|DHX29 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25164794921875 2 480.761092 959.507631 0.35369 0.00017004 -0.033576 -1.6142E-05 0.32011 0.0001539 480.76104802850654 103.18 0.37502 103.18 103 103.37 0 16 10 2 0 0 0 0.95515 1 20257 20257 10.824 0 1 890990 + 48215 14212 32129 32150 47343 47343 0.026257848974637454 VDSESHVLA 9 Unmodified _VDSESHVLA_ 0 0 0 REV__ENSG00000109158|ENST00000264318|GABRA4 REV__ENSG00000109158|ENST00000264318|GABRA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7380065917969 2 478.737814 955.461075 -0.040002 -1.9151E-05 0.24185 0.00011578 0.20185 9.6632E-05 478.73785610711644 30.427 0.42554 30.427 30.235 30.66 0 20 11 2 0 0 0 0.44262 1 5499 5499 23.148 0 1 1380200 + 48216 15154 32130 32151 47344 47344 -0.018436997244634767 VDSRSVLPG 9 Unmodified _VDSRSVLPG_ 0 0 0 ENST00000539705.5_1_16:19612936-19621669:+|nuORF ENST00000539705.5_1_16:19612936-19621669:+|nuORF ENST00000539705.5_1_16:19612936-19621669:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2495422363281 2 465.256174 928.497795 -0.015016 -6.9861E-06 -0.80737 -0.00037563 -0.82238 -0.00038262 465.2557515606762 49.222 0.792 46.223 45.791 46.583 -2.999 72 22 4 0 0 0 0.38188 1 8926 8926 26.884 2.8631 1 18066000 48217 11061 32131 32152 47345 47345 0.030685968921034146 VDSSPFKSL 9 Unmodified _VDSSPFKSL_ 0 0 0 REV__ENSG00000205863|ENST00000382137|C1QTNF9B REV__ENSG00000205863|ENST00000382137|C1QTNF9B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2575378417969 2 490.258382 978.502212 0.14639 7.1771E-05 0.074131 3.6343E-05 0.22052 0.00010811 490.2583593057579 38.477 0.49027 36.035 35.704 36.195 -2.4419 25 13 3 0 0 0 0.38188 1 6789 6789 26.884 2.8631 1 2587100 + 48218 19604 32132 32153 47346 47346 0.012100613150096251 VDSVNNLL 8 Unmodified _VDSVNNLL_ 0 0 0 tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1 tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1 tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2279357910156 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 66.435 1 66.435 65.935 66.935 0 0 0 0 0.22934 1 12833 12833 0.063987 0.034705 1 48219 25916 32133 32154 47347 47347 0.019015056264720442 VDSVNNLL 8 Unmodified _VDSVNNLL_ 0 0 0 tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1 tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1 tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2356262207031 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 69.962 1 66.495 65.995 66.995 -3.467 0 0 0 0.21323 1 13239 13239 14.582 1.0738 1 48220 25916 32133 32154 47348 47348 0.019015056264720442 VDSVNNLL 8 Unmodified _VDSVNNLL_ 0 0 0 tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1 tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1 tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2357482910156 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 70.216 1 66.749 66.249 67.249 -3.467 0 0 0 0.20568 1 13296 13296 20.871 3.9289 1 48221 25916 32133 32154 47349 47349 0.019015056264720442 VDTFLEDVK 9 Unmodified _VDTFLEDVK_ 0 0 0 SERPINA1|p.K153T|1|0.47|ENSG00000197249|chr14:94382780-94382780|T/G|missense_variant;CON__P34955 SERPINA1|p.K153T|1|0.47|ENSG00000197249|chr14:94382780-94382780|T/G|missense_variant SERPINA1|p.K153T|1|0.47|ENSG00000197249|chr14:94382780-94382780|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2757568359375 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 80.329 1 76.489 75.989 76.989 -3.8392 0 0 0 0.19687 1 15244 15244 8.1555 5.5243 1 + 48222 671 32134 32155 47350 47350 0.009303131409069465 VDTIVDGVY 9 Unmodified _VDTIVDGVY_ 0 0 0 ENSG00000133962|ENST00000256343|CATSPERB ENSG00000133962|ENST00000256343|CATSPERB ENSG00000133962|ENST00000256343|CATSPERB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2580261230469 2 490.75039 979.486227 0.10223 5.0167E-05 1.4445 0.00070887 1.5467 0.00075904 490.75023289816494 60.494 0.79089 57.56 57.17 57.961 -2.9333 44 22 3 0 0 0 0.60698 1 11689 11689 30.225 0 1 2122100 48223 3822 32135 32156 47351 47351 -0.004336449219067617 VDTRKSDCSA 10 Unmodified _VDTRKSDCSA_ 0 0 0 REV__nc|ENSG00000171885|P55087-2|AQP4 REV__nc|ENSG00000171885|P55087-2|AQP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2642822265625 2 541.250763 1080.48697 0.62196 0.00033664 0.16772 9.0781E-05 0.78969 0.00042742 541.2507134546761 45.543 1.0445 45.543 45.199 46.244 0 100 29 5 0 0 0 0.59736 1 8622 8622 19.362 0 1 32527000 + 48224 18259 32136 32157 47352 47352 -0.05005173544486752 VDVAQGLEP 9 Unmodified _VDVAQGLEP_ 0 0 0 nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62;nc|ENSG00000075702|O43379-3|WDR62;ENST00000378860.8_1_19:36545867-36564559:+|nuORF;nc|ENSG00000075702|O43379-2|WDR62;ENST00000589953.1_1_19:36562547-36565998:+|nuORF nc|ENSG00000075702|O43379|WDR62 nc|ENSG00000075702|O43379|WDR62 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2459411621094 2 464.242732 926.470912 0.37814 0.00017555 -0.4012 -0.00018625 -0.023057 -1.0704E-05 464.24247104930464 120.03 1.0813 115.57 115.16 116.24 -4.467 68 30 3 0 0 0 0.19983 1 23213 23213 4.7159 0 1 12583000 48225 1525 32137 32158 47353 47353 0.0047348828089752715 VDVHPSVY 8 Unmodified _VDVHPSVY_ 0 0 0 ZNF41|p.E324G|1|0.14|ENSG00000147124|chrX:47448799-47448799|T/C|missense_variant;nc|ENSG00000147124|P51814-4|ZNF41;nc|ENSG00000147124|P51814-8|ZNF41;nc|ENSG00000147124|P51814-7|ZNF41;ENSG00000147124|ENST00000684689|ZNF41;nc|ENSG00000147124|P51814-2|ZNF41;nc|ENSG00000147124|P51814-3|ZNF41;nc|ENSG00000147124|P51814-5|ZNF41;nc|ENSG00000147124|P51814|ZNF41 ZNF41|p.E324G|1|0.14|ENSG00000147124|chrX:47448799-47448799|T/C|missense_variant ZNF41|p.E324G|1|0.14|ENSG00000147124|chrX:47448799-47448799|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.230712890625 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 179.53 1 174.66 174.16 175.16 -4.868 0 0 0 0.21486 1 35769 35769 5.7604 2.4791 1 48226 4683 32138 32159 47354 47354 -0.010864770279567892 VDVPGNASKEA 11 Unmodified _VDVPGNASKEA_ 0 0 0 DEPDC1|p.S433A|1|0.06|ENSG00000024526|chr1:68482511-68482511|A/C|missense_variant DEPDC1|p.S433A|1|0.06|ENSG00000024526|chr1:68482511-68482511|A/C|missense_variant DEPDC1|p.S433A|1|0.06|ENSG00000024526|chr1:68482511-68482511|A/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7766723632812 2 543.774928 1085.5353 -0.50409 -0.00027411 0.59892 0.00032568 0.094821 5.1561E-05 543.7752514473891 16.228 0.44431 15.006 14.819 15.263 -1.2219 34 12 4 0 0 0 0.36425 1 2307 2307 47.594 0 1 21071000 48227 818 32139 32160 47355 47355 -0.004043566329301029 VDVQVREMVK 10 Unmodified _VDVQVREMVK_ 0 0 0 ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF;nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1 ENST00000475971.5_1_7:893033-912965:+|nuORF ENST00000475971.5_1_7:893033-912965:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3018188476562 2 601.831723 1201.64889 0.28878 0.0001738 0.060073 3.6154E-05 0.34885 0.00020995 601.8318873661733 88.135 0.44707 88.135 88.02 88.467 0 20 12 2 0 0 0 0.59736 1 17196 17196 19.362 1.2156 1 1348600 48228 5569 32140 32161 47356 47356 0.056134152084496236 VDVRHVSV 8 Unmodified _VDVRHVSV_ 0 0 0 ENSG00000187714|ENST00000374115|SLC18A3 ENSG00000187714|ENST00000374115|SLC18A3 ENSG00000187714|ENST00000374115|SLC18A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.13885498046875 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 154.7 1 149.45 148.95 149.95 -5.2526 0 0 0 0.21486 1 29996 29996 3.5965 0 1 48229 7121 32141 32162 47357 47357 0.044843204745689036 VDYCLHVL 8 Unmodified _VDYCLHVL_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;ENST00000475973.1_1_1:19452160-19454188:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24237060546875 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 176.05 1 176.05 175.55 176.55 0 0 0 0 0.23749 1 36471 36471 0.12286 0 1 48230 3477 32142 32163 47358 47358 -0.007929598659416115 VDYCLHVL 8 Unmodified _VDYCLHVL_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;ENST00000475973.1_1_1:19452160-19454188:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2421875 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 176.3 1 176.3 175.8 176.8 0 0 0 0 0.21486 1 36523 36523 0.79363 0 1 48231 3477 32142 32163 47359 47359 -0.007929598659416115 VDYCLHVL 8 Unmodified _VDYCLHVL_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;ENST00000475973.1_1_1:19452160-19454188:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24224853515625 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 175.54 1 170.75 170.25 171.25 -4.7898 0 0 0 0.23749 1 35891 35891 0.12286 0 1 48232 3477 32142 32163 47360 47360 -0.007929598659416115 VDYCLHVL 8 Unmodified _VDYCLHVL_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;ENST00000475973.1_1_1:19452160-19454188:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2425231933594 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 176.01 1 171.22 170.72 171.72 -4.7898 0 0 0 0.21486 1 35987 35987 2.5775 0 1 48233 3477 32142 32163 47361 47361 -0.007929598659416115 VDYCLHVL 8 Unmodified _VDYCLHVL_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;ENST00000475973.1_1_1:19452160-19454188:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.241455078125 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 176.72 1 171.85 171.35 172.35 -4.8739 0 0 0 0.21486 1 35159 35159 0.79363 0 1 48234 3477 32142 32163 47362 47362 -0.007929598659416115 VDYCLHVL 8 Unmodified _VDYCLHVL_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;ENST00000475973.1_1_1:19452160-19454188:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.241455078125 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 176.02 1 171.11 170.61 171.61 -4.9008 0 0 0 0.23749 1 35089 35089 0.12286 0 1 48235 3477 32142 32163 47363 47363 -0.007929598659416115 VDYCLHVL 8 Unmodified _VDYCLHVL_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;ENST00000475973.1_1_1:19452160-19454188:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.241455078125 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 176.03 1 171.13 170.63 171.63 -4.9008 0 0 0 0.21486 1 35091 35091 2.5775 0 1 48236 3477 32142 32163 47364 47364 -0.007929598659416115 VDYCLHVL 8 Unmodified _VDYCLHVL_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;ENST00000475973.1_1_1:19452160-19454188:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24310302734375 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 176.24 1 171.34 170.84 171.84 -4.9008 0 0 0 0.21486 1 35136 35136 2.5775 0 1 48237 3477 32142 32163 47365 47365 -0.007929598659416115 VDYGRKELV 9 Unmodified _VDYGRKELV_ 0 0 0 TDRD6|p.C440Wfs*5|1|0.13|ENSG00000180113|chr6:46689446-46689447|-/G|frameshift_variant;TDRD6|p.N498Kfs*4|1|0.35|ENSG00000180113|chr6:46689616-46689617|-/A|frameshift_variant;TDRD6|p.N917Ifs*2|1|0.35|ENSG00000180113|chr6:46690872-46690872|A/-|frameshift_variant;TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant;nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6 TDRD6|p.C440Wfs*5|1|0.13|ENSG00000180113|chr6:46689446-46689447|-/G|frameshift_variant TDRD6|p.C440Wfs*5|1|0.13|ENSG00000180113|chr6:46689446-46689447|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2009582519531 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 134.29 1 129.47 128.97 129.97 -4.8175 0 0 0 0.23508 1 25854 25854 2.086 0.17963 1 48238 6658 32143 32164 47366 47366 0.046171279889904326 VEADEPPDPL 10 Unmodified _VEADEPPDPL_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2818603515625 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 133.45 1 128.58 128.08 129.08 -4.8726 0 0 0 0.22576 1 25639 25639 14.838 3.198 1 + 48239 17178;24395 32144 32165 47367 47367 -0.039508676184368596 VEAEQTALP 9 Unmodified _VEAEQTALP_ 0 0 0 REV__ENSG00000233232|ENST00000452313|NPIPB7 REV__ENSG00000233232|ENST00000452313|NPIPB7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7277526855469 2 479.248015 956.481476 0.13652 6.5428E-05 0.091893 4.404E-05 0.22842 0.00010947 479.2480382235488 50.166 1.6903 50.166 49.404 51.094 0 91 48 2 0 0 0 0.31673 1 9466 9466 39.95 10.868 1 2301500 + 48240 19294 32145 32166 47368 47368 0.001494709353323742 VEAERLTL 8 Unmodified _VEAERLTL_ 0 0 0 nc|ENSG00000115325|Q99704-3|DOK1;ENSG00000115325|ENST00000233668|DOK1 nc|ENSG00000115325|Q99704-3|DOK1 nc|ENSG00000115325|Q99704-3|DOK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2580261230469 2 465.766374 929.518196 0.31162 0.00014514 -0.56298 -0.00026222 -0.25136 -0.00011707 465.76612693217965 65.961 0.86857 62.677 62.164 63.033 -3.2832 45 24 3 0 0 0 0.24385 1 12463 12463 58.679 0 1 4936100 48241 2847 32146 32167 47369 47369 0.05061767551910634 VEAEVKPAS 9 Unmodified _VEAEVKPAS_ 0 0 0 REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2588195800781 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 104.67 1 100.33 99.829 100.83 -4.346 0 0 0 0.21469 1 20055 20055 19.257 0 1 + 48242 12988 32147 32168 47370 47370 0.01945774797957256 VEAGLRMAD 9 Unmodified _VEAGLRMAD_ 0 0 0 REV__nc|ENSG00000111674|P09104-2|ENO2 REV__nc|ENSG00000111674|P09104-2|ENO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2431335449219 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 56.979 1 53.803 53.303 54.303 -3.1761 0 0 0 0.19343 1 10615 10615 2.6312 0 1 + 48243 15253 32148 32169 47371 47371 -0.011950493596486922 VEAIFSKY 8 Unmodified _VEAIFSKY_ 0 0 0 ENST00000528764.1_1_11:86735664-86735814:+|nuORF;HNRNPC|p.P148Sfs*29|1|0.28|ENSG00000092199|chr14:21213081-21213082|-/G|frameshift_variant;HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC ENST00000528764.1_1_11:86735664-86735814:+|nuORF ENST00000528764.1_1_11:86735664-86735814:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7362365722656 2 478.758018 955.501483 -0.080738 -3.8654E-05 0.6152 0.00029453 0.53446 0.00025588 478.75800818361995 96.765 1.2486 96.765 96.116 97.364 0 92 35 4 0 0 0 8448 1 19015 19015 87.878 54.285 1 42464000 48244 1828 32149 32170 47372 47372 0.02195266665944473 VEAIFSKY 8 Unmodified _VEAIFSKY_ 0 0 0 ENST00000528764.1_1_11:86735664-86735814:+|nuORF;HNRNPC|p.P148Sfs*29|1|0.28|ENSG00000092199|chr14:21213081-21213082|-/G|frameshift_variant;HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC ENST00000528764.1_1_11:86735664-86735814:+|nuORF ENST00000528764.1_1_11:86735664-86735814:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74407958984375 2 478.758018 955.501483 0.0338 1.6182E-05 0.30731 0.00014712 0.34111 0.00016331 478.7579634499951 100.91 1.2844 96.748 96.046 97.331 -4.1594 89 36 4 0 0 0 0.42637 1 19916 19916 31.268 0.6318 1 58499000 48245 1828 32149 32170 47373 47373 0.02195266665944473 VEAIFSKY 8 Unmodified _VEAIFSKY_ 0 0 0 ENST00000528764.1_1_11:86735664-86735814:+|nuORF;HNRNPC|p.P148Sfs*29|1|0.28|ENSG00000092199|chr14:21213081-21213082|-/G|frameshift_variant;HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC ENST00000528764.1_1_11:86735664-86735814:+|nuORF ENST00000528764.1_1_11:86735664-86735814:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7232666015625 2 478.758018 955.501483 0.29583 0.00014163 0.26528 0.00012701 0.56111 0.00026864 478.75787870620064 100.98 1.0521 96.68 96.09 97.142 -4.297 88 30 4 0 0 0 0.27251 1 19380 19380 38.176 2.1314 1 45797000 48246 1828 32149 32170 47374 47374 0.02195266665944473 VEAIFSKY 8 Unmodified _VEAIFSKY_ 0 0 0 ENST00000528764.1_1_11:86735664-86735814:+|nuORF;HNRNPC|p.P148Sfs*29|1|0.28|ENSG00000092199|chr14:21213081-21213082|-/G|frameshift_variant;HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC ENST00000528764.1_1_11:86735664-86735814:+|nuORF ENST00000528764.1_1_11:86735664-86735814:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7229309082031 2 478.758018 955.501483 0.34115 0.00016333 -0.21997 -0.00010531 0.12119 5.8019E-05 478.75787321487866 100.66 1.0387 96.669 96.381 97.42 -3.9895 52 29 2 0 0 0 0.11546 1 19401 19401 60.074 9.2189 1 53353000 48247 1828 32149 32170 47375 47375 0.02195266665944473 VEAKRVVK 8 Unmodified _VEAKRVVK_ 0 0 0 REV__ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant REV__ARHGEF11|p.P1384Lfs*41|1|0.34|ENSG00000132694|chr1:156937418-156937418|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16998291015625 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 13.171 1 13.171 12.671 13.671 0 0 0 0 0.21486 1 1884 1884 0.40072 0 1 + 48248 13108 32150 32171 47376 47376 0.1198605692242154 VEALTVVPQ 9 Unmodified _VEALTVVPQ_ 0 0 0 ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35 ENSG00000068079|ENST00000415816|IFI35 ENSG00000068079|ENST00000415816|IFI35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7362060546875 2 478.276575 954.538597 0.35562 0.00017008 -0.27569 -0.00013186 0.079928 3.8228E-05 478.27659152902464 149.94 0.8125 144.82 144.5 145.31 -5.1204 44 22 3 0 0 0 0.31728 1 29139 29139 2.6312 0 1 2539200 48249 1400 32151 32172 47377 47377 0.0595093821170849 VEALYLMITV 10 Unmodified _VEALYLMITV_ 0 0 0 REV__SLC41A3|p.L422M|1|0.1|ENSG00000114544|chr3:126007216-126007216|G/T|missense_variant REV__SLC41A3|p.L422M|1|0.1|ENSG00000114544|chr3:126007216-126007216|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3204345703125 2 576.322668 1150.63078 NaN NaN NaN NaN NaN NaN NaN 162.59 1 157.4 156.9 157.9 -5.1878 0 0 0 0.22588 1 31577 31577 9.3831 0 1 + 48250 24644 32152 32173 47378 47378 0.06149280233694299 VEANELKA 8 Unmodified _VEANELKA_ 0 0 0 REV__nc|ENSG00000144485|Q96HZ4-4|HES6 REV__nc|ENSG00000144485|Q96HZ4-4|HES6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2204284667969 2 437.23745 872.460347 0.22252 9.7293E-05 -0.1033 -4.5167E-05 0.11922 5.2126E-05 437.23731951731617 26.88 0.51555 26.88 26.635 27.15 0 22 14 2 0 0 0 8448 1 4725 4725 14.838 2.5976 1 1110800 + 48251 16784 32153 32174 47379 47379 0.019015056264720442 VEANELKA 8 Unmodified _VEANELKA_ 0 0 0 REV__nc|ENSG00000144485|Q96HZ4-4|HES6 REV__nc|ENSG00000144485|Q96HZ4-4|HES6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22900390625 2 437.23745 872.460347 0.17938 7.8431E-05 -0.086583 -3.7857E-05 0.092797 4.0574E-05 437.2372230418536 28.613 0.7307 26.617 26.381 27.111 -1.9962 26 20 2 0 0 0 8448 1 4858 4858 6.2058 0 1 557520 + 48252 16784 32153 32174 47380 47380 0.019015056264720442 VEAPGETF 8 Unmodified _VEAPGETF_ 0 0 0 nc|ENSG00000255529|Q6EEV4-2|POLR2M;ENST00000380557.4_2_15:57998925-58001412:+|nuORF;ENST00000567643.1_1_15:57998925-57999700:+|nuORF;ENST00000299638.7_2_15:57998859-58000941:+|nuORF;nc|ENSG00000255529|Q6EEV4|POLR2M nc|ENSG00000255529|Q6EEV4-2|POLR2M nc|ENSG00000255529|Q6EEV4-2|POLR2M MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2530212402344 2 425.203076 848.391599 -0.28615 -0.00012167 0.19669 8.3633E-05 -0.089455 -3.8036E-05 425.2030838100577 72.069 0.53069 68.758 68.388 68.919 -3.3107 25 14 2 0 0 0 0.30817 1 14003 14003 60.39 30.165 1 1892200 48253 8538 32154 32175 47381 47381 -0.038661586732359865 VEAPGETF 8 Unmodified _VEAPGETF_ 0 0 0 nc|ENSG00000255529|Q6EEV4-2|POLR2M;ENST00000380557.4_2_15:57998925-58001412:+|nuORF;ENST00000567643.1_1_15:57998925-57999700:+|nuORF;ENST00000299638.7_2_15:57998859-58000941:+|nuORF;nc|ENSG00000255529|Q6EEV4|POLR2M nc|ENSG00000255529|Q6EEV4-2|POLR2M nc|ENSG00000255529|Q6EEV4-2|POLR2M MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 425.203076 848.391599 -0.23051 -9.8013E-05 0.16706 7.1036E-05 -0.063444 -2.6976E-05 425.2029661849526 68.485 0.49857 68.485 68.254 68.752 0 -0.17802 9.8677E-05 NaN 60.39 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 966950 48254 8538 32154 32175 -0.038661586732359865 VEAPGETF 8 Unmodified _VEAPGETF_ 0 0 0 nc|ENSG00000255529|Q6EEV4-2|POLR2M;ENST00000380557.4_2_15:57998925-58001412:+|nuORF;ENST00000567643.1_1_15:57998925-57999700:+|nuORF;ENST00000299638.7_2_15:57998859-58000941:+|nuORF;nc|ENSG00000255529|Q6EEV4|POLR2M nc|ENSG00000255529|Q6EEV4-2|POLR2M nc|ENSG00000255529|Q6EEV4-2|POLR2M MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 425.203076 848.391599 0.25188 0.0001071 -0.042825 -1.8209E-05 0.20906 8.8891E-05 425.20302440230444 72.306 0.3959 68.679 68.477 68.873 -3.6275 0.015503 -7.9813E-05 NaN 60.39 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1136000 48255 8538 32154 32175 -0.038661586732359865 VEAPGETF 8 Unmodified _VEAPGETF_ 0 0 0 nc|ENSG00000255529|Q6EEV4-2|POLR2M;ENST00000380557.4_2_15:57998925-58001412:+|nuORF;ENST00000567643.1_1_15:57998925-57999700:+|nuORF;ENST00000299638.7_2_15:57998859-58000941:+|nuORF;nc|ENSG00000255529|Q6EEV4|POLR2M nc|ENSG00000255529|Q6EEV4-2|POLR2M nc|ENSG00000255529|Q6EEV4-2|POLR2M MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 425.203076 848.391599 0.088692 3.7712E-05 -0.065805 -2.7981E-05 0.022887 9.7316E-06 425.202971230689 72.269 0.51665 68.731 68.398 68.914 -3.5385 0.067383 -9.9356E-05 NaN 60.39 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1058100 48256 8538 32154 32175 -0.038661586732359865 VEAPLGLAH 9 Unmodified _VEAPLGLAH_ 0 0 0 REV__ENSG00000198954|ENST00000361983|KIFBP REV__ENSG00000198954|ENST00000361983|KIFBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75604248046875 2 453.75581 905.497067 -0.0092686 -4.2057E-06 0.0080844 3.6683E-06 -0.0011842 -5.3734E-07 453.7557451505265 77.393 0.63345 73.627 73.227 73.86 -3.7664 26 17 2 0 0 0 0.44262 1 14620 14620 23.148 0 1 1510800 + 48257 19490 32155 32176 47382 47382 0.040538022430382625 VEAPSALSV 9 Unmodified _VEAPSALSV_ 0 0 0 REV__nc|ENSG00000141448|Q92908-2|GATA6 REV__nc|ENSG00000141448|Q92908-2|GATA6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2166442871094 2 436.739825 871.465098 0.58855 0.00025705 -0.55828 -0.00024382 0.03027 1.322E-05 436.7395346835271 120.58 0.83147 115.94 115.49 116.32 -4.645 52 23 3 0 0 0 0.096847 1 23091 23091 71.134 13.662 1 6308200 + 48258 16627 32156 32177 47383 47383 0.024223897692309038 VEASAEGPR 9 Unmodified _VEASAEGPR_ 0 0 0 nc|ENSG00000068323|P19532-2|TFE3;ENSG00000068323|ENST00000315869|TFE3 nc|ENSG00000068323|P19532-2|TFE3 nc|ENSG00000068323|P19532-2|TFE3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2288513183594 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 137.85 1 133.01 132.51 133.51 -4.84 0 0 0 0.19638 1 26563 26563 0.37959 0.25177 1 48259 1402 32157 32178 47384 47384 -0.0148856652166387 VEASRIMN 8 Unmodified _VEASRIMN_ 0 0 0 ENSG00000110315|ENST00000265981|RNF141 ENSG00000110315|ENST00000265981|RNF141 ENSG00000110315|ENST00000265981|RNF141 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.236572265625 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 63.863 1 60.447 59.947 60.947 -3.4158 0 0 0 0.20294 1 11941 11941 23.148 1.4018 1 48260 2570 32158 32179 47385 47385 -0.0031903201407885717 VEATGVFRY 9 Unmodified _VEATGVFRY_ 0 0 0 REV__tr|U7SKN6|U7SKN6_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02089PE=4SV=1 REV__tr|U7SKN6|U7SKN6_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02089PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2791748046875 2 521.271824 1040.5291 -0.68282 -0.00035593 0.019948 1.0398E-05 -0.66287 -0.00034553 521.2720987008792 131.33 0.61781 126.5 126.24 126.86 -4.8355 23 17 3 0 0 0 0.62102 1 25204 25204 11.64 0 1 2067400 + 48261 24933 32159 32180 47386 47386 0.010451699261921021 VEATGVFRY 9 Unmodified _VEATGVFRY_ 0 0 0 REV__tr|U7SKN6|U7SKN6_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02089PE=4SV=1 REV__tr|U7SKN6|U7SKN6_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02089PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 521.271824 1040.5291 -0.25385 -0.00013232 0.63102 0.00032893 0.37717 0.00019661 521.2719704928545 131.18 0.57346 126.54 126.14 126.71 -4.6359 0.055206 0.00054785 NaN 11.64 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1791400 + 48262 24933 32159 32180 0.010451699261921021 VEATGVFRY 9 Unmodified _VEATGVFRY_ 0 0 0 REV__tr|U7SKN6|U7SKN6_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02089PE=4SV=1 REV__tr|U7SKN6|U7SKN6_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02089PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 521.271824 1040.5291 0.22927 0.00011951 -0.072522 -3.7804E-05 0.15675 8.1709E-05 521.271596989051 131.19 0.48807 126.42 126.15 126.64 -4.7725 -0.069449 -0.00018563 NaN 11.64 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1711000 + 48263 24933 32159 32180 0.010451699261921021 VEATHVLPL 9 Unmodified _VEATHVLPL_ 0 0 0 CDC23|p.L234Sfs*23|1|0.44|ENSG00000094880|chr5:138198737-138198738|-/A|frameshift_variant;ENSG00000094880|ENST00000394886|CDC23;ENST00000482948.5_1_5:137536747-137548896:-|nuORF;nc|ENSG00000094880|Q9UJX2-3|CDC23 CDC23|p.L234Sfs*23|1|0.44|ENSG00000094880|chr5:138198737-138198738|-/A|frameshift_variant CDC23|p.L234Sfs*23|1|0.44|ENSG00000094880|chr5:138198737-138198738|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26263427734375 2 489.784567 977.554582 0.27176 0.0001331 0.50728 0.00024846 0.77904 0.00038156 489.78454527432996 156.98 0.67712 152.2 151.84 152.52 -4.7885 29 18 2 0 0 0 0.54354 1 31271 31271 16.942 1.0951 1 1337700 48264 452 32160 32181 47387 47387 0.06490644448604144 VEATKVNL 8 Unmodified _VEATKVNL_ 0 0 0 REV__ENST00000581396.5_1_17:17748968-17749280:-|nuORF REV__ENST00000581396.5_1_17:17748968-17749280:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23095703125 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 109.99 1 109.99 109.49 110.49 0 0 0 0 0.21486 1 21631 21631 9.3474 0 1 + 48265 23242 32161 32182 47388 47388 0.055383825231729134 VEATKVNL 8 Unmodified _VEATKVNL_ 0 0 0 REV__ENST00000581396.5_1_17:17748968-17749280:-|nuORF REV__ENST00000581396.5_1_17:17748968-17749280:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2154846191406 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 113.72 1 109.45 108.95 109.95 -4.2725 0 0 0 0.20896 1 21902 21902 18.135 0 1 + 48266 23242 32161 32182 47389 47389 0.055383825231729134 VEATSRLKTF 10 Unmodified _VEATSRLKTF_ 0 0 0 ENSG00000105364|ENST00000253099|MRPL4;nc|ENSG00000105364|Q9BYD3-2|MRPL4;ENST00000590702.1_1_19:10369168-10369411:+|nuORF ENSG00000105364|ENST00000253099|MRPL4 ENSG00000105364|ENST00000253099|MRPL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.322509765625 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 78.7 1 78.7 78.2 79.2 0 0 0 0 2.8426 1 15317 15317 0.013265 0.0073095 1 48267 2301 32162 32183 47390 47390 0.06533086051786086 VEATYFKA 8 Unmodified _VEATYFKA_ 0 0 0 REV__ROCK2|p.S684Afs*5|1|0.34|ENSG00000134318|chr2:11211834-11211834|T/-|frameshift_variant REV__ROCK2|p.S684Afs*5|1|0.34|ENSG00000134318|chr2:11211834-11211834|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651916503906 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 103.18 1 103.18 102.68 103.68 0 0 0 0 0.21486 1 20272 20272 1.6526 0 1 + 48268 16204 32163 32184 47391 47391 0.00354693631857117 VEAVEVTPL 9 Unmodified _VEAVEVTPL_ 0 0 0 ENSG00000136274|ENST00000490531|NACAD;NACAD|p.I1557Rfs*6|1|0.03|ENSG00000136274|chr7:45080644-45080645|-/CCATC|frameshift_variant;NACAD|p.V1328Cfs*176|1|0.17|ENSG00000136274|chr7:45082199-45082199|T/-|frameshift_variant ENSG00000136274|ENST00000490531|NACAD ENSG00000136274|ENST00000490531|NACAD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7224426269531 2 478.768583 955.522613 NaN NaN NaN NaN NaN NaN NaN 157.49 1 152.71 152.21 153.21 -4.7885 0 0 0 0.20155 1 31323 31323 23.148 5.0134 1 48269 4001 32164 32185 47392 47392 0.04307231974826209 VEAVLVRHL 9 Unmodified _VEAVLVRHL_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 518.4149169921875 2 518.319109 1034.62366 NaN NaN NaN NaN NaN NaN NaN 162.62 1 157.83 157.33 158.33 -4.7898 0 0 0 0.23508 1 32366 32366 4.3292 0 1 + 48270 17219 32165 32186 47393 47393 0.10773728468188892 VEAVVRSF 8 Unmodified _VEAVVRSF_ 0 0 0 LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;ENSG00000271601|ENST00000604000|LIX1L LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76422119140625 2 453.75581 905.497067 -0.12483 -5.6644E-05 0.31792 0.00014426 0.19309 8.7615E-05 453.7559216613694 77.038 0.55382 73.602 73.298 73.852 -3.4357 27 15 2 0 0 0 0.1027 2 15034 15034;15078 62.573 12.64 1 2357100 48271 8003 32166 32187 47394;47395 47394 0.04053802243049631 VEAVVRSF 8 Unmodified _VEAVVRSF_ 0 0 0 LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;ENSG00000271601|ENST00000604000|LIX1L LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7557373046875 2 453.75581 905.497067 -0.0092686 -4.2057E-06 0.0080844 3.6683E-06 -0.0011842 -5.3734E-07 453.7557451505265 77.393 0.63345 73.627 73.227 73.86 -3.7664 26 17 2 0 0 0 0.1027 1 14667 14667 62.573 12.64 1 1510800 48272 8003 32166 32187 47396 47396 0.04053802243049631 VEAVVRSF 8 Unmodified _VEAVVRSF_ 0 0 0 LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;ENSG00000271601|ENST00000604000|LIX1L LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75592041015625 2 453.75581 905.497067 0.065045 2.9514E-05 0.046105 2.0921E-05 0.11115 5.0435E-05 453.75588262799494 77.205 0.59129 73.546 73.258 73.849 -3.6588 28 16 2 0 0 0 0.1027 1 14716 14716 62.573 12.64 1 1822800 48273 8003 32166 32187 47397 47397 0.04053802243049631 VEAVVRSF 8 Unmodified _VEAVVRSF_ 0 0 0 LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant;ENSG00000271601|ENST00000604000|LIX1L LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant LIX1L|p.K157Yfs*5|1|0.1|ENSG00000271601|chr1:145942842-145942843|-/AATGTAA|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 453.75581 905.497067 0.29372 0.00013328 -0.25795 -0.00011705 0.035771 1.6231E-05 453.7556950148744 73.68 0.56419 73.68 73.347 73.911 0 0.065798 -0.0002762 NaN 62.573 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1516500 48274 8003 32166 32187 0.04053802243049631 VECDYFGM 8 Unmodified _VECDYFGM_ 0 0 0 ENST00000478489.5_1_2:242343266-242344701:+|nuORF;ENST00000473082.5_1_2:242312627-242344774:+|nuORF;nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2 ENST00000478489.5_1_2:242343266-242344701:+|nuORF ENST00000478489.5_1_2:242343266-242344701:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7864685058594 2 482.182971 962.35139 0.2999 0.00014461 0.0098987 4.773E-06 0.3098 0.00014938 482.1829344061211 105.18 0.66279 105.18 104.83 105.49 0 40 18 3 0 0 0 1.0147 1 20649 20649 5.2307 5.2307 1 3788400 48275 1010 32167 32188 47398 47398 -0.13129164659665093 VECDYFGM 8 Unmodified _VECDYFGM_ 0 0 0 ENST00000478489.5_1_2:242343266-242344701:+|nuORF;ENST00000473082.5_1_2:242312627-242344774:+|nuORF;nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2 ENST00000478489.5_1_2:242343266-242344701:+|nuORF ENST00000478489.5_1_2:242343266-242344701:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7655029296875 2 482.182971 962.35139 -0.37702 -0.00018179 0.24206 0.00011672 -0.13496 -6.5075E-05 482.1831578097115 109.63 0.69656 105.25 104.89 105.58 -4.3776 42 19 3 0 0 0 1.0147 1 21643 21643 5.2307 0 1 5751600 48276 1010 32167 32188 47399 47399 -0.13129164659665093 VECGKGFKRK 10 Unmodified _VECGKGFKRK_ 0 0 0 nc|ENSG00000197162|A8K8V0-2|ZNF785;ENSG00000197162|ENST00000395216|ZNF785 nc|ENSG00000197162|A8K8V0-2|ZNF785 nc|ENSG00000197162|A8K8V0-2|ZNF785 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3214111328125 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 179.92 1 175.05 174.55 175.55 -4.868 0 0 0 2.8426 1 35860 35860 0.013265 0 1 48277 7338 32168 32189 47400 47400 0.058808696194319054 VECHFTPP 8 Unmodified _VECHFTPP_ 0 0 0 REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2388916015625 2 465.212921 928.411288 NaN NaN NaN NaN NaN NaN NaN 84.894 1 81.183 80.683 81.683 -3.7117 0 0 0 0.21323 1 16217 16217 14.582 5.2343 1 + 48278 23021 32169 32190 47401 47401 -0.05578105934114319 VECRNVPG 8 Unmodified _VECRNVPG_ 0 0 0 ARHGEF28|p.F1364V|1|0.39|ENSG00000214944|chr5:73904237-73904237|T/G|missense_variant ARHGEF28|p.F1364V|1|0.39|ENSG00000214944|chr5:73904237-73904237|T/G|missense_variant ARHGEF28|p.F1364V|1|0.39|ENSG00000214944|chr5:73904237-73904237|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2354736328125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 76.319 1 72.596 72.096 73.096 -3.7227 0 0 0 0.21486 1 14448 14448 9.3474 0 1 48279 212 32170 32191 47402 47402 -0.023875877025943737 VECWTRRFY 9 Unmodified _VECWTRRFY_ 0 0 0 REV__ENSG00000274286|ENST00000620793|ADRA2B REV__ENSG00000274286|ENST00000620793|ADRA2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7648315429688 2 630.303133 1258.59171 NaN NaN NaN NaN NaN NaN NaN 123.08 1 118.49 117.99 118.99 -4.5926 0 0 0 0.23508 1 23692 23692 8.5933 0 1 + 48280 19926 32171 32192 47403 47403 -0.02724007277288365 VEDDDEDEE 9 Unmodified _VEDDDEDEE_ 0 0 0 REV__MYT1L|p.D145V|1|0.2|ENSG00000186487|chr2:1943053-1943053|T/A|missense_variant REV__MYT1L|p.D145V|1|0.2|ENSG00000186487|chr2:1943053-1943053|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7714233398438 2 547.685838 1093.35712 NaN NaN NaN NaN NaN NaN NaN 123.28 1 118.69 118.19 119.19 -4.5926 0 0 0 0.23508 1 23732 23732 4.3292 0 1 + 48281 23908 32172 32193 47404 47404 -0.18582116133325144 VEDDGWWS 8 Unmodified _VEDDGWWS_ 0 0 0 REV__nc|ENSG00000143702|Q5SW79-3|CEP170 REV__nc|ENSG00000143702|Q5SW79-3|CEP170 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 496.732666015625 2 497.201064 992.387576 NaN NaN NaN NaN NaN NaN NaN 69.414 1 65.878 65.378 66.378 -3.5362 0 0 0 0.23749 1 13068 13068 0.12286 0 1 + 48282 16746 32173 32194 47405 47405 -0.10892248166942409 VEDDTWYIY 9 Unmodified _VEDDTWYIY_ 0 0 0 REV__ENSG00000070018|ENST00000261349|LRP6 REV__ENSG00000070018|ENST00000261349|LRP6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2725219726562 2 602.263862 1202.51317 NaN NaN NaN NaN NaN NaN NaN 161.55 1 156.4 155.9 156.9 -5.1438 0 0 0 0.23508 1 31378 31378 4.3292 0 1 + 48283 14247 32174 32195 47406 47406 -0.07998581101378477 VEDEAPLRY 9 Unmodified _VEDEAPLRY_ 0 0 0 REV__ENST00000556254.1_1_14:35579616-35591165:-|nuORF REV__ENST00000556254.1_1_14:35579616-35591165:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7766723632812 2 546.272021 1090.52949 -0.032101 -1.7536E-05 0.16985 9.2786E-05 0.13775 7.525E-05 546.2720898341606 23.395 2.3068 21.941 20.801 23.107 -1.4535 223 65 5 0 0 0 0.50943 1 3867 3867 1.2148 0 1 88899000 + 48284 14580 32175 32196 47407 47407 -0.01215455144642874 VEDEEFYL 8 Unmodified _VEDEEFYL_ 0 0 0 REV__nc|ENSG00000183576|Q86TU7-3|SETD3 REV__nc|ENSG00000183576|Q86TU7-3|SETD3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2571411132812 2 522.23203 1042.44951 NaN NaN NaN NaN NaN NaN NaN 165.89 1 160.91 160.41 161.41 -4.9811 0 0 0 0.21486 1 32467 32467 9.3474 2.0582 1 + 48285 18844 32176 32197 47408 47408 -0.07001941538487699 VEDEGLRVF 9 Unmodified _VEDEGLRVF_ 0 0 0 ENSG00000185989|ENST00000334062|RASA3 ENSG00000185989|ENST00000334062|RASA3 ENSG00000185989|ENST00000334062|RASA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2765502929688 2 532.274564 1062.53457 0.21285 0.0001133 0.074024 3.9401E-05 0.28688 0.0001527 532.2746474055062 108.69 0.78195 108.69 108.31 109.09 0 47 21 3 0 0 0 0.15274 2 21392 21340;21392 43.772 10.987 1 4917900 48286 7027 32177 32198 47409;47410 47410 0.0058084871798200766 VEDEGLRVF 9 Unmodified _VEDEGLRVF_ 0 0 0 ENSG00000185989|ENST00000334062|RASA3 ENSG00000185989|ENST00000334062|RASA3 ENSG00000185989|ENST00000334062|RASA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2781982421875 2 532.274564 1062.53457 -0.1132 -6.0252E-05 0.58283 0.00031023 0.46964 0.00024998 532.2747520264144 113.01 0.79546 108.56 108.11 108.9 -4.4538 47 21 3 0 0 0 0.094316 1 22264 22264 57.722 17.772 1 3459800 48287 7027 32177 32198 47411 47411 0.0058084871798200766 VEDEGLRVF 9 Unmodified _VEDEGLRVF_ 0 0 0 ENSG00000185989|ENST00000334062|RASA3 ENSG00000185989|ENST00000334062|RASA3 ENSG00000185989|ENST00000334062|RASA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2776489257812 2 532.274564 1062.53457 0.62874 0.00033466 -0.29617 -0.00015765 0.33257 0.00017702 532.2744388162718 112.84 0.83365 108.56 108.08 108.91 -4.2725 55 23 3 0 0 0 0.21532 1 21747 21747 36.506 12.486 1 2893900 48288 7027 32177 32198 47412 47412 0.0058084871798200766 VEDEGLRVF 9 Unmodified _VEDEGLRVF_ 0 0 0 ENSG00000185989|ENST00000334062|RASA3 ENSG00000185989|ENST00000334062|RASA3 ENSG00000185989|ENST00000334062|RASA3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.274564 1062.53457 0.40376 0.00021491 0.063447 3.3771E-05 0.46721 0.00024868 532.2745704121628 113.14 0.91661 108.62 108.04 108.96 -4.5259 0.01096 -3.4158E-05 NaN 57.722 43 25 2 NaN NaN NaN NaN 0 NaN NaN 0 3488800 48289 7027 32177 32198 0.0058084871798200766 VEDEHSTLL 9 Unmodified _VEDEHSTLL_ 0 0 0 HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;HTT|p.H2238Ffs*6|1|0.28|ENSG00000197386|chr4:3212643-3212644|CA/-|frameshift_variant;ENST00000506137.1_1_4:3117057-3123221:+|nuORF;HTT|p.N699Mfs*9|2|0.17|ENSG00000197386|chr4:3131390-3131390|A/-|frameshift_variant;HTT|p.P1176Lfs*3|1|0.18|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.258544921875 2 521.756204 1041.49785 0.37091 0.00019352 -0.68988 -0.00035995 -0.31897 -0.00016642 521.7558719051748 83.441 0.43024 83.441 83.185 83.615 0 20 11 2 0 0 0 0.35443 1 16239 16239 28.487 1.6032 1 1952000 48290 7362 32178 32199 47413 47413 -0.021234478985661553 VEDEHSTLL 9 Unmodified _VEDEHSTLL_ 0 0 0 HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;HTT|p.H2238Ffs*6|1|0.28|ENSG00000197386|chr4:3212643-3212644|CA/-|frameshift_variant;ENST00000506137.1_1_4:3117057-3123221:+|nuORF;HTT|p.N699Mfs*9|2|0.17|ENSG00000197386|chr4:3131390-3131390|A/-|frameshift_variant;HTT|p.P1176Lfs*3|1|0.18|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2780151367188 2 521.756204 1041.49785 -0.2951 -0.00015397 0.39491 0.00020605 0.099806 5.2074E-05 521.7563434086861 86.968 0.49316 83.241 82.975 83.468 -3.727 20 13 2 0 0 0 0.74655 1 17034 17034 15.847 8.558 1 1380300 48291 7362 32178 32199 47414 47414 -0.021234478985661553 VEDELVKKY 9 Unmodified _VEDELVKKY_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2073059082031 3 374.87289 1121.59684 -0.75814 -0.00028421 0.49312 0.00018486 -0.26502 -9.935E-05 374.8731501659155 49.923 0.3377 46.916 46.705 47.042 -3.0068 12 9 2 0 0 0 0.58077 1 9159 9159 14.405 0 1 477000 48292 1057;300 32179 32200 47415 47415 0.04090575066334168 VEDEYRFMD 9 Unmodified _VEDEYRFMD_ 0 0 0 REV__ENST00000507947.5_1_4:76580183-76582836:-|nuORF REV__ENST00000507947.5_1_4:76580183-76582836:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2965087890625 2 602.252971 1202.49139 NaN NaN NaN NaN NaN NaN NaN 159.94 1 159.94 159.44 160.44 0 0 0 0 0.23508 1 32112 32112 4.3292 0 1 + 48293 16485 32180 32201 47416 47416 -0.10175709121585896 VEDEYRFMD 9 Unmodified _VEDEYRFMD_ 0 0 0 REV__ENST00000507947.5_1_4:76580183-76582836:-|nuORF REV__ENST00000507947.5_1_4:76580183-76582836:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3013305664062 2 602.252971 1202.49139 NaN NaN NaN NaN NaN NaN NaN 162.13 1 156.99 156.49 157.49 -5.1438 0 0 0 0.23508 1 31492 31492 4.3292 0 1 + 48294 16485 32180 32201 47417 47417 -0.10175709121585896 VEDHILHT 8 Unmodified _VEDHILHT_ 0 0 0 ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B ENSG00000144036|ENST00000272427|EXOC6B ENSG00000144036|ENST00000272427|EXOC6B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7740783691406 2 482.248349 962.482145 NaN NaN NaN NaN NaN NaN NaN 119.8 1 115.33 114.83 115.83 -4.467 0 0 0 0.21486 1 23063 23063 9.3474 0 1 48295 4540 32181 32202 47418 47418 -0.0005968962495899177 VEDIAFVY 8 Unmodified _VEDIAFVY_ 0 0 0 REV__DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant REV__DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7440490722656 2 478.242201 954.469849 -0.07451 -3.5634E-05 0.33357 0.00015953 0.25906 0.00012389 478.24230768233724 147.6 0.76208 147.6 147.16 147.92 0 36 21 2 0 0 0 0.6199 2 29509 29509;29556 20.871 1.4322 1 4731600 + 48296 13660 32182 32203 47419;47420 47419 -0.009207260879975365 VEDLDKSKF 9 Unmodified _VEDLDKSKF_ 0 0 0 E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant;ENSG00000129173|ENST00000250024|E2F8 E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7943115234375 2 540.782222 1079.54989 0.14681 7.9394E-05 0.25292 0.00013677 0.39973 0.00021617 540.781958471806 105.78 1.1149 101.41 100.91 102.03 -4.3764 143 31 7 0 0 0 0.64382 1 20242 20242 10.074 0 1 89165000 48297 907 32183 32204 47421 47421 0.013297155152031337 VEDMEYFY 8 Unmodified _VEDMEYFY_ 0 0 0 REV__ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant REV__ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7678833007812 2 548.220608 1094.42666 0.32973 0.00018077 -0.45534 -0.00024963 -0.12561 -6.8863E-05 548.2202398725601 111.47 0.55614 111.47 111.17 111.73 0 25 15 2 0 0 0 0.96284 1 21937 21937 19.439 5.5329 1 1826400 + 48298 15285 32184 32205 47422 47422 -0.11677283927588178 VEDMMKKLW 9 Unmodified _VEDMMKKLW_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.26025390625 2 590.29867 1178.58279 NaN NaN NaN NaN NaN NaN NaN 161.21 1 155.98 155.48 156.48 -5.2299 0 0 0 0.23508 1 31308 31308 7.9102 0.3012 1 48299 5830 32185 32206 47423 47423 0.0006388304202573636 VEDNNDNVP 9 Unmodified _VEDNNDNVP_ 0 0 0 ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000204967|Q9UN74-2|PCDHA4 ENSG00000204967|ENST00000530339|PCDHA4 ENSG00000204967|ENST00000530339|PCDHA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 509.2329406738281 2 508.219985 1014.42542 -0.043395 -2.2054E-05 -1.0671 -0.00054235 -1.1105 -0.0005644 508.2193253497694 94.433 0.75768 90.589 90.16 90.918 -3.844 49 21 3 0 0 0 0.42842 1 18101 18101 4.477 3.8189 1 5936600 48300 7623 32186 32207 47424 47424 -0.08121781972147346 VEDNNDNVP 9 Unmodified _VEDNNDNVP_ 0 0 0 ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000204967|Q9UN74-2|PCDHA4 ENSG00000204967|ENST00000530339|PCDHA4 ENSG00000204967|ENST00000530339|PCDHA4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 508.219985 1014.42542 0.04621 2.3485E-05 -0.98185 -0.000499 -0.93564 -0.00047551 508.219420277034 90.3 0.77225 90.3 89.878 90.651 0 -0.18361 -0.0001036 NaN 4.477 45 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5173100 48301 7623 32186 32207 -0.08121781972147346 VEDNNDNVP 9 Unmodified _VEDNNDNVP_ 0 0 0 ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000204967|Q9UN74-2|PCDHA4 ENSG00000204967|ENST00000530339|PCDHA4 ENSG00000204967|ENST00000530339|PCDHA4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 508.219985 1014.42542 -0.064935 -3.3001E-05 -0.79792 -0.00040552 -0.86286 -0.00043852 508.21956326825295 94.553 0.77239 90.562 90.176 90.949 -3.9907 0.078781 8.3355E-05 NaN 4.477 45 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5446400 48302 7623 32186 32207 -0.08121781972147346 VEDNNDNVP 9 Unmodified _VEDNNDNVP_ 0 0 0 ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000204967|Q9UN74-2|PCDHA4 ENSG00000204967|ENST00000530339|PCDHA4 ENSG00000204967|ENST00000530339|PCDHA4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 508.219985 1014.42542 -0.20029 -0.00010179 -0.60488 -0.00030741 -0.80516 -0.0004092 508.2197147695586 94.674 0.83832 90.482 90.09 90.928 -4.1912 -0.001038 0.00027957 NaN 4.477 52 23 3 NaN NaN NaN NaN 0 NaN NaN 0 5646300 48303 7623 32186 32207 -0.08121781972147346 VEDNNDNVP 9 Unmodified _VEDNNDNVP_ 0 0 0 ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000204967|Q9UN74-2|PCDHA4 ENSG00000204967|ENST00000530339|PCDHA4 ENSG00000204967|ENST00000530339|PCDHA4 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 508.219985 1014.42542 -0.043395 -2.2054E-05 -1.0671 -0.00054235 -1.1105 -0.0005644 508.2193253497694 94.433 0.75768 90.589 90.16 90.918 -3.844 0.10587 -0.0001903 NaN 4.477 49 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5936600 48304 7623 32186 32207 -0.08121781972147346 VEDPWGLI 8 Unmodified _VEDPWGLI_ 0 0 0 REV__ENSG00000254656|ENST00000649591|RTL1 REV__ENSG00000254656|ENST00000649591|RTL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 118.8 1 114.39 113.89 114.89 -4.4088 0 0 0 0.21486 1 22862 22862 0.45834 0 1 + 48305 19849 32187 32208 47425 47425 0.003546936318684857 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 66.827 1 66.827 66.327 67.327 0 0 0 0 0.23508 1 12911 12911 4.897 0.36815 1 + 48306 20293 32188 32209 47426 47426 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 73.835 1 73.835 73.335 74.335 0 0 0 0 0.23508 1 14326 14326 2.4985 0 1 + 48307 20293 32188 32209 47427 47427 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 75.249 1 75.249 74.749 75.749 0 0 0 0 0.23508 1 14611 14611 7.609 0 1 + 48308 20293 32188 32209 47428 47428 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 79.569 1 79.569 79.069 80.069 0 0 0 0 0.23508 1 15483 15483 2.4985 0 1 + 48309 20293 32188 32209 47429 47429 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 83.219 1 83.219 82.719 83.719 0 0 0 0 0.23508 1 16225 16225 2.4985 0 1 + 48310 20293 32188 32209 47430 47430 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2021789550781 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 96.221 1 96.221 95.721 96.721 0 0 0 0 0.23508 1 18851 18851 2.7352 0 1 + 48311 20293 32188 32209 47431 47431 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2010192871094 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 114.09 1 114.09 113.59 114.59 0 0 0 0 0.23508 1 22440 22440 2.7352 0 1 + 48312 20293 32188 32209 47432 47432 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 149 1 149 148.5 149.5 0 0 0 0 0.23508 1 29826 29826 2.7352 0.23671 1 + 48313 20293 32188 32209 47433 47433 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 68.955 1 65.775 65.275 66.275 -3.1796 0 0 0 0.23508 1 13398 13398 4.897 0 1 + 48314 20293 32188 32209 47434 47434 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 69.36 1 66.18 65.68 66.68 -3.1796 0 0 0 0.23508 1 13486 13486 4.897 0 1 + 48315 20293 32188 32209 47435 47435 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 69.593 1 66.414 65.914 66.914 -3.1796 0 0 0 0.23508 1 13531 13531 4.897 0 1 + 48316 20293 32188 32209 47436 47436 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21307373046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 76.71 1 73.295 72.795 73.795 -3.4151 0 0 0 0.23508 1 14972 14972 4.897 0 1 + 48317 20293 32188 32209 47437 47437 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 76.877 1 73.462 72.962 73.962 -3.4151 0 0 0 0.23508 1 15006 15006 4.5289 0.65253 1 + 48318 20293 32188 32209 47438 47438 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 78.314 1 74.85 74.35 75.35 -3.4633 0 0 0 0.23508 1 15291 15291 7.1017 1.8048 1 + 48319 20293 32188 32209 47439 47439 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201416015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 83.098 1 79.49 78.99 79.99 -3.6079 0 0 0 0.23508 1 16242 16242 4.897 0 1 + 48320 20293 32188 32209 47440 47440 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018737792969 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 100.39 1 96.227 95.727 96.727 -4.1594 0 0 0 0.23508 1 19729 19729 2.4985 0 1 + 48321 20293 32188 32209 47441 47441 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 111.33 1 106.91 106.41 107.41 -4.4231 0 0 0 0.23508 1 21935 21935 4.897 0.36815 1 + 48322 20293 32188 32209 47442 47442 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 121.38 1 116.83 116.33 117.33 -4.5476 0 0 0 0.23508 1 23925 23925 1.1933 0 1 + 48323 20293 32188 32209 47443 47443 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2010803222656 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 153.15 1 148.38 147.88 148.88 -4.7684 0 0 0 0.23508 1 30434 30434 2.7352 0 1 + 48324 20293 32188 32209 47444 47444 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.200927734375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 70.188 1 66.608 66.108 67.108 -3.5798 0 0 0 0.23508 1 13227 13227 4.897 0.36815 1 + 48325 20293 32188 32209 47445 47445 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20135498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 79.247 1 75.442 74.942 75.942 -3.8048 0 0 0 0.23508 1 15034 15034 4.897 0 1 + 48326 20293 32188 32209 47446 47446 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20111083984375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 88.124 1 84.129 83.629 84.629 -3.9953 0 0 0 0.23508 1 16785 16785 4.897 0 1 + 48327 20293 32188 32209 47447 47447 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 100.59 1 96.289 95.789 96.789 -4.297 0 0 0 0.23508 1 19240 19240 4.897 0 1 + 48328 20293 32188 32209 47448 47448 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2019958496094 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 150.37 1 145.17 144.67 145.67 -5.1994 0 0 0 0.23508 1 29138 29138 2.7352 0 1 + 48329 20293 32188 32209 47449 47449 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2023010253906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 153.95 1 148.68 148.18 149.18 -5.2669 0 0 0 0.23508 1 29850 29850 2.7352 0 1 + 48330 20293 32188 32209 47450 47450 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2019348144531 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 158.12 1 152.84 152.34 153.34 -5.2748 0 0 0 0.23508 1 30689 30689 2.7352 0 1 + 48331 20293 32188 32209 47451 47451 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 158.97 1 153.7 153.2 154.2 -5.2748 0 0 0 0.23508 1 30857 30857 2.7352 0 1 + 48332 20293 32188 32209 47452 47452 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 159.29 1 154.02 153.52 154.52 -5.2748 0 0 0 0.23508 1 30915 30915 2.7352 0 1 + 48333 20293 32188 32209 47453 47453 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201904296875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 78.703 1 75.027 74.527 75.527 -3.676 0 0 0 0.23508 1 14991 14991 4.897 0 1 + 48334 20293 32188 32209 47454 47454 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017822265625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 88.781 1 85.031 84.531 85.531 -3.7501 0 0 0 0.23508 1 16998 16998 2.4985 0 1 + 48335 20293 32188 32209 47455 47455 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 89.347 1 85.569 85.069 86.069 -3.7779 0 0 0 0.23508 1 17107 17107 2.7352 0 1 + 48336 20293 32188 32209 47456 47456 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 100.26 1 96.275 95.775 96.775 -3.9895 0 0 0 0.23508 1 19260 19260 4.897 0 1 + 48337 20293 32188 32209 47457 47457 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015075683594 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 100.55 1 96.558 96.058 97.058 -3.9895 0 0 0 0.23508 1 19317 19317 2.4985 0 1 + 48338 20293 32188 32209 47458 47458 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20196533203125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 159 1 153.73 153.23 154.23 -5.2712 0 0 0 0.23508 1 30852 30852 2.7352 0 1 + 48339 20293 32188 32209 47459 47459 0.0461712798901317 VEDVLYRKG 9 Unmodified _VEDVLYRKG_ 0 0 0 REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF REV__ENST00000276390.6_1_8:20070399-20072395:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2010498046875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 160.95 1 155.7 155.2 156.2 -5.2526 0 0 0 0.23508 1 31233 31233 1.1933 0 1 + 48340 20293 32188 32209 47460 47460 0.0461712798901317 VEEAERLKQSA 11 Unmodified _VEEAERLKQSA_ 0 0 0 nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149-7|PLEC nc|ENSG00000178209|Q15149-7|PLEC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7546997070312 2 630.333141 1258.65173 0.40051 0.00025246 -0.27918 -0.00017598 0.12133 7.6479E-05 630.3329552006564 35.208 0.38246 32.955 32.743 33.125 -2.2527 20 10 3 0 0 0 0.64504 1 6194 6194 28.495 3.5035 1 2207000 48341 6567 32189 32210 47461 47461 0.032749618669413394 VEEAFLAH 8 Unmodified _VEEAFLAH_ 0 0 0 nc|ENSG00000158079|A2A3K4|PTPDC1;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2312927246094 2 458.232168 914.449782 -0.069846 -3.2006E-05 -0.13991 -6.4111E-05 -0.20976 -9.6117E-05 458.232048716561 67.086 0.4989 67.086 66.904 67.403 0 21 13 2 0 0 0 0.11689 1 13017 13017 59.795 33.454 1 1658700 48342 5153 32190 32211 47462 47462 -0.010864770279567892 VEEAFLAH 8 Unmodified _VEEAFLAH_ 0 0 0 nc|ENSG00000158079|A2A3K4|PTPDC1;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2322692871094 2 458.232168 914.449782 -0.20321 -9.3117E-05 -0.40979 -0.00018778 -0.613 -0.0002809 458.2322358254783 70.447 0.56462 67.198 66.86 67.425 -3.2492 33 15 3 0 0 0 0.088049 2 13727 13724;13727 78.445 37.996 1 1217600 48343 5153 32190 32211 47463;47464 47464 -0.010864770279567892 VEEAFLAH 8 Unmodified _VEEAFLAH_ 0 0 0 nc|ENSG00000158079|A2A3K4|PTPDC1;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23223876953125 2 458.232168 914.449782 0.30981 0.00014196 -0.51996 -0.00023826 -0.21015 -9.6299E-05 458.2319370362417 70.79 0.35284 67.211 66.911 67.264 -3.5798 17 9 2 0 0 0 0.098504 1 13330 13330 63.394 29.206 1 795160 48344 5153 32190 32211 47465 47465 -0.010864770279567892 VEEAFLAH 8 Unmodified _VEEAFLAH_ 0 0 0 nc|ENSG00000158079|A2A3K4|PTPDC1;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 nc|ENSG00000158079|A2A3K4|PTPDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2266845703125 2 458.232168 914.449782 0.34414 0.0001577 -0.98834 -0.00045289 -0.6442 -0.00029519 458.2318256401138 70.596 0.46007 67.129 66.919 67.379 -3.467 20 12 2 0 0 0 8448 3 13349 13349;13358;13405 29.841 14.362 1 1097500 48345 5153 32190 32211 47466;47467;47468 47466 -0.010864770279567892 VEEAKQIL 8 Unmodified _VEEAKQIL_ 0 0 0 nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2 nc|ENSG00000165410|Q9Y281-3|CFL2 nc|ENSG00000165410|Q9Y281-3|CFL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24749755859375 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 99.208 1 95.252 94.752 95.752 -3.9564 0 0 0 0.21323 1 19046 19046 14.582 0 1 48346 5626 32191 32212 47469 47469 0.05582651694669494 VEEDIPTL 8 Unmodified _VEEDIPTL_ 0 0 0 nc|ENSG00000183704|A6NJY1|SLC9B1P1 nc|ENSG00000183704|A6NJY1|SLC9B1P1 nc|ENSG00000183704|A6NJY1|SLC9B1P1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2374267578125 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 107.34 1 107.34 106.84 107.84 0 0 0 0 0.21486 1 21107 21107 9.3474 0 1 48347 12506 32192 32213 47470 47470 -0.0009733381323258072 VEEDSDDEE 9 Unmodified _VEEDSDDEE_ 0 0 0 REV__PRCC|p.E322Nfs*105|1|0.15|ENSG00000143294|chr1:156787047-156787047|C/-|frameshift_variant REV__PRCC|p.E322Nfs*105|1|0.15|ENSG00000143294|chr1:156787047-156787047|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2864990234375 2 533.688381 1065.36221 0.11543 6.1603E-05 -3.6796 -0.0019638 -3.5642 -0.0019022 533.6867580691691 141.01 0.10017 141.01 140.96 141.06 0 4 2 2 0 0 0 0.87974 1 28085 28085 4.3292 0 1 2550600 + 48348 16709 32193 32214 47471 47471 -0.16785812270700262 VEEEDCVHK 9 Unmodified _VEEEDCVHK_ 0 0 0 REV__SLC4A4|p.F457Lfs*9|1|0.4|ENSG00000080493|chr4:71453538-71453538|T/-|frameshift_variant REV__SLC4A4|p.F457Lfs*9|1|0.4|ENSG00000080493|chr4:71453538-71453538|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7941284179688 2 544.239864 1086.46517 -0.04159 -2.2635E-05 0.1555 8.463E-05 0.11391 6.1995E-05 544.2396219321608 42.128 0.31894 39.477 39.288 39.607 -2.651 10 8 2 0 0 0 0.84208 1 7557 7557 0.40072 0 1 492360 + 48349 14408 32194 32215 47472 47472 -0.07459978293081804 VEEETRRY 8 Unmodified _VEEETRRY_ 0 0 0 ENST00000485021.1_1_1:115118369-115124212:-|nuORF;BCAS2|p.N98Mfs*10|1|0.15|ENSG00000116752|chr1:114575716-114575716|T/-|frameshift_variant;ENSG00000116752|ENST00000369541|BCAS2 ENST00000485021.1_1_1:115118369-115124212:-|nuORF ENST00000485021.1_1_1:115118369-115124212:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2835083007812 2 541.26727 1080.51999 0.26253 0.0001421 2.9499 0.0015967 3.2125 0.0017388 541.2696715107609 130.94 0.31325 126.16 126.01 126.32 -4.7725 11 8 2 0 0 0 0.64227 1 25217 25217 19.439 0 1 1099400 48350 303 32195 32216 47473 47473 -0.01705223430121805 VEEETRRY 8 Unmodified _VEEETRRY_ 0 0 0 ENST00000485021.1_1_1:115118369-115124212:-|nuORF;BCAS2|p.N98Mfs*10|1|0.15|ENSG00000116752|chr1:114575716-114575716|T/-|frameshift_variant;ENSG00000116752|ENST00000369541|BCAS2 ENST00000485021.1_1_1:115118369-115124212:-|nuORF ENST00000485021.1_1_1:115118369-115124212:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2833251953125 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 39.855 1 37.418 36.918 37.918 -2.4363 0 0 0 0.21486 1 7119 7119 12.532 0 1 48351 303 32195 32216 47474 47474 -0.01705223430121805 VEEEVPNI 8 Unmodified _VEEEVPNI_ 0 0 0 nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENSG00000048342|ENST00000424120|CC2D2A nc|ENSG00000048342|Q9P2K1-2|CC2D2A nc|ENSG00000048342|Q9P2K1-2|CC2D2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2502136230469 2 464.73474 927.454927 0.14169 6.585E-05 -0.13658 -6.3471E-05 0.0051193 2.3791E-06 464.73464293332887 91.024 0.55143 87.216 86.927 87.479 -3.8083 27 15 2 0 0 0 8448 1 17424 17424 0.62683 0 1 1526300 48352 1226 32196 32217 47475 47475 -0.011702179559961223 VEEFFEDY 8 Unmodified _VEEFFEDY_ 0 0 0 REV__nc|ENSG00000160201|Q01081-4|U2AF1 REV__nc|ENSG00000160201|Q01081-4|U2AF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2009582519531 3 359.818562 1076.43386 -0.79096 -0.0002846 -1.3315 -0.00047909 -2.1224 -0.00076369 359.8182538844582 79.645 0.59134 75.969 75.727 76.318 -3.676 20 16 2 0 0 0 1.0265 1 15228 15228 1.6526 0 1 1466400 + 48353 17403 32197 32218 47476 47476 -0.10130228055504631 VEEFGWCAPG 10 Unmodified _VEEFGWCAPG_ 0 0 0 REV__ENST00000451122.5_1_7:116165410-116165638:+|nuORF REV__ENST00000451122.5_1_7:116165410-116165638:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7784423828125 2 547.734217 1093.45388 NaN NaN NaN NaN NaN NaN NaN 153.65 1 153.65 153.15 154.15 0 0 0 0 0.22588 1 30789 30789 10.824 0 1 + 48354 21803 32198 32219 47477 47477 -0.0891075559654837 VEEGFSIQA 9 Unmodified _VEEGFSIQA_ 0 0 0 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2641906738281 2 490.24019 978.465826 -0.016404 -8.042E-06 0.1858 9.1085E-05 0.16939 8.3043E-05 490.2402188760907 103.64 0.98169 99.426 98.875 99.857 -4.2183 63 28 3 0 0 0 0.046396 3 20410 20341;20358;20410 67.187 59.71 1 6595700 48355 6221 32199 32220 47478;47479;47480 47480 -0.0242681558172535 VEEGFSIQA 9 Unmodified _VEEGFSIQA_ 0 0 0 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.255615234375 2 490.24019 978.465826 0.30031 0.00014722 -0.12396 -6.0768E-05 0.17635 8.6455E-05 490.2400650376743 103.87 0.83199 99.525 99.071 99.903 -4.346 57 23 3 0 0 0 0.13708 1 19870 19870 46.021 19.137 1 9858600 48356 6221 32199 32220 47481 47481 -0.0242681558172535 VEEGFSIQA 9 Unmodified _VEEGFSIQA_ 0 0 0 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.254638671875 2 490.24019 978.465826 0.39375 0.00019303 -0.092438 -4.5317E-05 0.30131 0.00014771 490.24007336763736 103.5 1.0927 99.444 98.997 100.09 -4.0543 60 30 3 0 0 0 0.32263 1 19893 19893 46.021 15.384 1 6534800 48357 6221 32199 32220 47482 47482 -0.0242681558172535 VEEGTIRTRNS 11 Unmodified _VEEGTIRTRNS_ 0 0 0 REV__nc|ENSG00000077782|P11362-21|FGFR1 REV__nc|ENSG00000077782|P11362-21|FGFR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7706909179688 2 631.32839 1260.64223 0.39755 0.00025099 2.3128 0.0014601 2.7103 0.0017111 631.3312298204314 121.53 0.17751 121.53 121.44 121.61 0 5 4 2 0 0 0 0.8952 1 23945 23945 9.544 0 1 1130100 + 48358 14369 32200 32221 47483 47483 0.022331935814236203 VEEGTMTLY 9 Unmodified _VEEGTMTLY_ 0 0 0 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2722778320312 2 521.741708 1041.46886 0.20391 0.00010639 0.53128 0.00027719 0.73519 0.00038358 521.7421085398894 126.08 0.49799 126.08 125.86 126.35 0 18 13 2 0 0 0 0.32428 1 24883 24883 30.225 1.738 1 2167700 + 48359 18324 32201 32222 47484 47484 -0.05021308519212653 VEEHDQSA 8 Unmodified _VEEHDQSA_ 0 0 0 REV__ENST00000360890.6_3_10:49939467-49943973:+|nuORF REV__ENST00000360890.6_3_10:49939467-49943973:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22491455078125 2 457.696146 913.377739 0.38208 0.00017488 -1.2102 -0.0005539 -0.82811 -0.00037902 457.6958941010782 38.836 1.1609 38.836 38.211 39.372 0 75 32 3 0 0 0 0.9455 1 7261 7261 3.9444 0 1 2802900 + 48360 20874 32202 32223 47485 47485 -0.08241436172329486 VEEHESRLP 9 Unmodified _VEEHESRLP_ 0 0 0 REV__EIF3A|p.R1304H|1|0.11|ENSG00000107581|chr10:119037127-119037127|C/T|missense_variant REV__EIF3A|p.R1304H|1|0.11|ENSG00000107581|chr10:119037127-119037127|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7857055664062 2 548.275095 1094.53564 0.33293 0.00018254 1.6462 0.00090257 1.9791 0.0010851 548.2743150536224 149.58 0.36102 149.58 149.44 149.8 0 12 9 2 0 0 0 0.7906 1 29940 29940 13.042 3.6593 1 1826400 + 48361 13794 32203 32224 47486 47486 -0.00784936913078127 VEEHLKAKAR 10 Unmodified _VEEHLKAKAR_ 0 0 0 ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2760009765625 2 590.843479 1179.67241 0.33786 0.00019962 -2.2159 -0.0013092 -1.878 -0.0011096 591.3419136391296 115.45 0.17931 115.45 115.34 115.52 0 5 4 2 0 0 0 0.89145 1 22710 22710 12.241 4.9514 1 1580700 48362 2804 32204 32225 47487 47487 0.08975597037260741 VEEIWRQED 9 Unmodified _VEEIWRQED_ 0 0 0 ENST00000474765.1_1_3:58417473-58417506:-|nuORF ENST00000474765.1_1_3:58417473-58417506:-|nuORF ENST00000474765.1_1_3:58417473-58417506:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2874755859375 2 602.28566 1202.55677 NaN NaN NaN NaN NaN NaN NaN 130.65 1 130.65 130.15 131.15 0 0 0 0 0.23508 1 25826 25826 7.2892 0 1 48363 10266 32205 32226 47488 47488 -0.03640971604227161 VEEKAMKPY 9 Unmodified _VEEKAMKPY_ 0 0 0 tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1 tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1 tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7801513671875 2 547.781167 1093.54778 0.072763 3.9858E-05 1.0276 0.00056292 1.1004 0.00060278 547.7819688738944 133.93 0.58176 129.06 128.65 129.23 -4.8726 26 16 2 0 0 0 0.6329 1 25697 25697 10.824 0.75 1 2179300 48364 25876 32206 32227 47489 47489 0.004749635057351043 VEEKDVDPI 9 Unmodified _VEEKDVDPI_ 0 0 0 tr|U7SUU5|U7SUU5_FUSNUPhosphoribosylformylglycinamidinecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purMPE=3SV=1 tr|U7SUU5|U7SUU5_FUSNUPhosphoribosylformylglycinamidinecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purMPE=3SV=1 tr|U7SUU5|U7SUU5_FUSNUPhosphoribosylformylglycinamidinecyclo-ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purMPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.267333984375 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 165.84 1 160.89 160.39 161.39 -4.9484 0 0 0 0.23508 1 32440 32440 12.532 0.89125 1 48365 26214 32207 32228 47490 47490 -0.001302772387589357 VEELKKVIH 9 Unmodified _VEELKKVIH_ 0 0 0 KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant;nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1 KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7835693359375 2 547.832049 1093.64954 NaN NaN NaN NaN NaN NaN NaN 163.14 1 157.95 157.45 158.45 -5.1878 0 0 0 0.22962 1 31727 31727 14.838 4.0143 1 48366 3445 32208 32229 47491 47491 0.10646577919806077 VEELLVAAQR 10 Unmodified _VEELLVAAQR_ 0 0 0 ENSG00000099860|ENST00000215631|GADD45B;ENST00000592937.1_1_19:2476275-2476629:+|nuORF ENSG00000099860|ENST00000215631|GADD45B ENSG00000099860|ENST00000215631|GADD45B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1173095703125 3 376.552151 1126.63462 0.048772 1.8365E-05 -0.1828 -6.8832E-05 -0.13402 -5.0467E-05 376.5520691625714 52.195 0.62774 49.107 48.742 49.37 -3.0876 32 17 2 0 0 0 0.91149 1 9588 9588 0.56317 0.35631 1 2706900 48367 1905 32209 32230 47492 47492 0.0763708605179545 VEELLVAAQR 10 Unmodified _VEELLVAAQR_ 0 0 0 ENSG00000099860|ENST00000215631|GADD45B;ENST00000592937.1_1_19:2476275-2476629:+|nuORF ENSG00000099860|ENST00000215631|GADD45B ENSG00000099860|ENST00000215631|GADD45B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 376.552151 1126.63462 0.093426 3.518E-05 -0.10589 -3.9872E-05 -0.01246 -4.6919E-06 376.55208208500727 49.291 0.6697 49.291 48.95 49.62 0 0.15082 -0.0003636 NaN 0.56317 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3152100 48368 1905 32209 32230 0.0763708605179545 VEELLVAAQR 10 Unmodified _VEELLVAAQR_ 0 0 0 ENSG00000099860|ENST00000215631|GADD45B;ENST00000592937.1_1_19:2476275-2476629:+|nuORF ENSG00000099860|ENST00000215631|GADD45B ENSG00000099860|ENST00000215631|GADD45B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 376.552151 1126.63462 -0.41023 -0.00015447 0.48775 0.00018366 0.077524 2.9192E-05 376.55225917234213 51.987 0.68159 49.104 48.697 49.378 -2.8824 -0.03621 0.00030701 NaN 0.56317 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2675800 48369 1905 32209 32230 0.0763708605179545 VEELLVAAQR 10 Unmodified _VEELLVAAQR_ 0 0 0 ENSG00000099860|ENST00000215631|GADD45B;ENST00000592937.1_1_19:2476275-2476629:+|nuORF ENSG00000099860|ENST00000215631|GADD45B ENSG00000099860|ENST00000215631|GADD45B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 376.552151 1126.63462 -0.74052 -0.00027885 0.58385 0.00021985 -0.15667 -5.8994E-05 376.552330533407 52.111 0.68938 49.059 48.658 49.348 -3.0517 -0.081345 0.00041557 NaN 0.56317 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2016100 48370 1905 32209 32230 0.0763708605179545 VEEMPHKPQ 9 Unmodified _VEEMPHKPQ_ 0 0 0 ENST00000567000.2_1_16:46729456-46731494:+|nuORF;ENST00000575571.5_1_16:46728976-46731494:+|nuORF;ENSG00000091651|ENST00000219097|ORC6 ENST00000567000.2_1_16:46729456-46731494:+|nuORF ENST00000567000.2_1_16:46729456-46731494:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.76708984375 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 166.58 1 161.79 161.29 162.29 -4.7898 0 0 0 0.22251 1 33485 33485 16.942 5.302 1 48371 1814 32210 32231 47493 47493 -0.020390912968423436 VEEPGLET 8 Unmodified _VEEPGLET_ 0 0 0 REV__nc|ENSG00000100523|Q8NEL9-2|DDHD1 REV__nc|ENSG00000100523|Q8NEL9-2|DDHD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2281494140625 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 94.603 1 90.412 89.912 90.912 -4.1911 0 0 0 0.21452 1 18048 18048 13.508 3.3245 1 + 48372 14718 32211 32232 47494 47494 -0.028581933643749835 VEEPRSSLR 9 Unmodified _VEEPRSSLR_ 0 0 0 REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3 REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.0483093261719 3 358.196367 1071.56727 NaN NaN NaN NaN NaN NaN NaN 51.045 1 51.045 50.545 51.545 0 0 0 0 0.23508 1 9676 9676 9.544 0 1 + 48373 19445 32212 32233 47495 47495 0.034350558408505094 VEERFRQL 8 Unmodified _VEERFRQL_ 0 0 0 nc|ENSG00000149091|Q13574-3|DGKZ nc|ENSG00000149091|Q13574-3|DGKZ nc|ENSG00000149091|Q13574-3|DGKZ MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013244628906 3 359.533091 1075.57744 -0.36996 -0.00013301 0.51463 0.00018503 0.14467 5.2015E-05 359.53324281312155 66.729 0.80025 63.402 62.954 63.754 -3.3268 44 22 3 0 0 0 0.62642 2 12548 12548;12601 20.454 1.5058 1 1311900 48374 12380 32213 32234 47496;47497 47496 0.04267663566088231 VEERFRQL 8 Unmodified _VEERFRQL_ 0 0 0 nc|ENSG00000149091|Q13574-3|DGKZ nc|ENSG00000149091|Q13574-3|DGKZ nc|ENSG00000149091|Q13574-3|DGKZ MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 359.533091 1075.57744 -0.56248 -0.00020223 0.25245 9.0763E-05 -0.31003 -0.00011147 359.53322890564596 63.452 0.41882 63.452 63.26 63.679 0 -0.030041 5.9541E-05 NaN 20.454 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1955700 48375 12380 32213 32234 0.04267663566088231 VEERFRQL 8 Unmodified _VEERFRQL_ 0 0 0 nc|ENSG00000149091|Q13574-3|DGKZ nc|ENSG00000149091|Q13574-3|DGKZ nc|ENSG00000149091|Q13574-3|DGKZ MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 359.533091 1075.57744 -0.28266 -0.00010163 0.19381 6.9682E-05 -0.088848 -3.1944E-05 359.5331138611111 66.629 0.62639 63.521 63.129 63.756 -3.1086 0.038716 -3.6999E-06 NaN 20.454 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1588400 48376 12380 32213 32234 0.04267663566088231 VEERFRQL 8 Unmodified _VEERFRQL_ 0 0 0 nc|ENSG00000149091|Q13574-3|DGKZ nc|ENSG00000149091|Q13574-3|DGKZ nc|ENSG00000149091|Q13574-3|DGKZ MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.533091 1075.57744 0.28457 0.00010231 -0.2445 -8.7907E-05 0.04007 1.4406E-05 359.5329611171864 67.049 0.63799 63.553 63.148 63.786 -3.4965 0.070823 -0.00047647 NaN 20.454 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1042100 48377 12380 32213 32234 0.04267663566088231 VEERITQVA 9 Unmodified _VEERITQVA_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD3|p.A1188V|1|0.18|ENSG00000170004|chr17:7903339-7903339|C/T|missense_variant;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;nc|ENSG00000170004|Q12873-3|CHD3 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2739868164062 2 522.787838 1043.56112 -0.60432 -0.00031593 0.62406 0.00032625 0.019737 1.0318E-05 522.7883650650558 50.877 0.45122 47.832 47.598 48.049 -3.0453 25 12 3 0 0 0 0.73481 1 9327 9327 24.991 5.629 1 2358000 48378 514;12455;515 32214 32235 47498 47498 0.04108537609317864 VEERITQVA 9 Unmodified _VEERITQVA_ 0 0 0 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD3|p.A1188V|1|0.18|ENSG00000170004|chr17:7903339-7903339|C/T|missense_variant;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD5|p.P1887Rfs*14|1|0.5|ENSG00000116254|chr1:6106698-6106698|G/-|frameshift_variant;nc|ENSG00000170004|Q12873-3|CHD3 CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2576293945312 2 522.787838 1043.56112 -0.01387 -7.2511E-06 0.29092 0.00015209 0.27705 0.00014484 522.7879396548988 50.817 0.55661 47.766 47.506 48.062 -3.0517 31 15 3 0 0 0 0.76263 1 9345 9345 22.658 14.503 1 1628200 48379 514;12455;515 32214 32235 47499 47499 0.04108537609317864 VEERLSFY 8 Unmodified _VEERLSFY_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000462630.5_1_20:2637388-2638937:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF;ENST00000471023.1_1_20:2637149-2637577:+|nuORF;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2791137695312 2 521.763832 1041.51311 0.18915 9.8692E-05 1.4754 0.00076979 1.6645 0.00086849 522.2662771083474 87.378 0.45657 83.649 83.364 83.82 -3.7289 18 12 2 0 0 0 0.64227 1 16709 16709 19.439 0 1 1559800 48380 2060 32215 32236 47500 47500 -0.00598536310712916 VEERVAAF 8 Unmodified _VEERVAAF_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93;ENST00000564278.1_1_16:56873384-56878518:+|nuORF nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2398376464844 2 460.745442 919.476331 -0.10572 -4.8712E-05 0.55043 0.00025361 0.4447 0.00020489 460.74554402019226 64.089 0.34919 64.089 63.888 64.237 0 16 9 2 0 0 0 0.43887 1 12316 12316 43.772 7.6454 1 2828100 48381 2151 32216 32237 47501 47501 0.013372118633810715 VEERVAAF 8 Unmodified _VEERVAAF_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93;ENST00000564278.1_1_16:56873384-56878518:+|nuORF nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5284423828125 2 460.745442 919.476331 0.25089 0.0001156 0.082409 3.7969E-05 0.3333 0.00015356 460.74542632112247 67.542 0.49026 64.046 63.748 64.238 -3.4965 22 13 2 0 0 0 0.30441 1 12671 12671 36.506 0.37917 1 2610900 48382 2151 32216 32237 47502 47502 0.013372118633810715 VEERVAAF 8 Unmodified _VEERVAAF_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93;ENST00000564278.1_1_16:56873384-56878518:+|nuORF nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2395324707031 2 460.745442 919.476331 0.31834 0.00014668 0.098463 4.5366E-05 0.41681 0.00019204 460.74537121543455 67.314 0.45383 63.987 63.718 64.172 -3.3268 28 12 3 0 0 0 0.43887 1 12666 12666 51.63 3.8811 1 2733800 48383 2151 32216 32237 47503 47503 0.013372118633810715 VEERVAAF 8 Unmodified _VEERVAAF_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93;ENST00000564278.1_1_16:56873384-56878518:+|nuORF nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.745442 919.476331 -0.11457 -5.2788E-05 0.39896 0.00018382 0.28439 0.00013103 460.7455380834653 67.104 0.5623 63.995 63.72 64.283 -3.1086 -0.034094 0.00014532 NaN 36.506 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2064200 48384 2151 32216 32237 0.013372118633810715 VEESDHWFHWL 11 Unmodified _VEESDHWFHWL_ 0 0 0 REV__NDUFB2|p.R72H|1|0.07|ENSG00000090266|chr7:140702982-140702982|G/A|missense_variant REV__NDUFB2|p.R72H|1|0.07|ENSG00000090266|chr7:140702982-140702982|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4022216796875 2 742.833308 1483.65206 NaN NaN NaN NaN NaN NaN NaN 137.44 1 132.51 132.01 133.01 -4.9216 0 0 0 0.23324 1 26420 26420 5.7319 2.9967 1 + 48385 24346 32217 32238 47504 47504 -0.07041618413200013 VEETALLAA 9 Unmodified _VEETALLAA_ 0 0 0 REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1 REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2395935058594 2 458.752933 915.491313 0.62733 0.00028779 -0.53378 -0.00024487 0.09355 4.2916E-05 458.75267052875205 102.98 0.58405 102.98 102.65 103.24 0 38 16 4 0 0 0 0.43406 1 20178 20178 30.225 14.378 1 3392400 + 48386 25368 32218 32239 47505 47505 0.030186589407207975 VEETEVQK 8 Unmodified _VEETEVQK_ 0 0 0 REV__PSIP1|p.A162V|1|0.4|ENSG00000164985|chr9:15479659-15479659|G/A|missense_variant REV__PSIP1|p.A162V|1|0.4|ENSG00000164985|chr9:15479659-15479659|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24444580078125 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 56.755 1 53.579 53.079 54.079 -3.1761 0 0 0 0.22647 1 10567 10567 9.544 3.3521 1 + 48387 24519 32219 32240 47506 47506 -0.005428329272717747 VEEWLLSPN 9 Unmodified _VEEWLLSPN_ 0 0 0 ENSG00000143061|ENST00000369486|IGSF3;nc|ENSG00000143061|O75054-2|IGSF3;IGSF3|p.R1001Gfs*34|1|0.12|ENSG00000143061|chr1:116579725-116579725|T/-|frameshift_variant ENSG00000143061|ENST00000369486|IGSF3 ENSG00000143061|ENST00000369486|IGSF3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7749633789062 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 32.084 1 29.936 29.436 30.436 -2.1483 0 0 0 0.21844 1 5547 5547 18.146 2.8979 1 48388 4451 32220 32241 47507 47507 -2.267139211653557E-05 VEEYLNSSLS 10 Unmodified _VEEYLNSSLS_ 0 0 0 REV__FAM81B|p.K315Nfs*18|2|0.35|ENSG00000153347|chr5:95446608-95446608|A/-|frameshift_variant REV__FAM81B|p.K315Nfs*18|2|0.35|ENSG00000153347|chr5:95446608-95446608|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.22015380859375 3 380.852154 1139.53463 -0.47366 -0.0001804 1.4933 0.00056871 1.0196 0.00038832 380.8526877961361 40.179 0.28685 37.544 37.369 37.655 -2.6348 11 7 2 0 0 0 0.91149 1 7459 7459 7.9454 5.4469 1 813840 + 48389 17147 32221 32242 47508 47508 -0.029551960726621473 VEEYQLPYY 9 Unmodified _VEEYQLPYY_ 0 0 0 nc|ENSG00000123612|Q8NER5-2|ACVR1C;nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000123612|Q8NER5-4|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C;ENSG00000107779|ENST00000372037|BMPR1A nc|ENSG00000123612|Q8NER5-2|ACVR1C nc|ENSG00000123612|Q8NER5-2|ACVR1C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2799682617188 2 602.282054 1202.54956 NaN NaN NaN NaN NaN NaN NaN 98.512 1 94.38 93.88 94.88 -4.1326 0 0 0 0.23508 1 19344 19344 8.5933 1.304 1 48390 3277 32222 32243 47509 47509 -0.04361704204666239 VEFCTHLI 8 Unmodified _VEFCTHLI_ 0 0 0 REV__ENST00000392133.7_1_2:217070158-217070227:+|nuORF REV__ENST00000392133.7_1_2:217070158-217070227:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2450256347656 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 136.39 1 136.39 135.89 136.89 0 0 0 0 0.21486 1 27027 27027 10.183 0 1 + 48391 21212 32223 32244 47510 47510 -0.007929598659188741 VEFEGQTRW 9 Unmodified _VEFEGQTRW_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;VPS8|p.C1294Y|1|0.18|ENSG00000156931|chr3:184999740-184999740|G/A|missense_variant;ENST00000492449.5_1_3:184603882-184769810:+|nuORF nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3302612304688 2 576.277638 1150.54072 NaN NaN NaN NaN NaN NaN NaN 91.109 1 91.109 90.609 91.609 0 0 0 0 0.23375 1 17802 17802 13.615 1.3742 1 48392 5110 32224 32245 47511 47511 -0.028526330504973885 VEFEGQTRW 9 Unmodified _VEFEGQTRW_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;VPS8|p.C1294Y|1|0.18|ENSG00000156931|chr3:184999740-184999740|G/A|missense_variant;ENST00000492449.5_1_3:184603882-184769810:+|nuORF nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.31884765625 2 576.277638 1150.54072 0.052017 2.9976E-05 0.49466 0.00028506 0.54668 0.00031504 576.2779161370001 95.443 0.44642 91.393 91.067 91.513 -4.0496 19 12 2 0 0 0 0.030811 2 18712 18684;18712 80.676 32.927 1 2172500 48393 5110 32224 32245 47512;47513 47513 -0.028526330504973885 VEFEGQTRW 9 Unmodified _VEFEGQTRW_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;VPS8|p.C1294Y|1|0.18|ENSG00000156931|chr3:184999740-184999740|G/A|missense_variant;ENST00000492449.5_1_3:184603882-184769810:+|nuORF nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3282470703125 2 576.277638 1150.54072 0.24954 0.00014381 0.018333 1.0565E-05 0.26788 0.00015437 576.2774888201404 95.426 0.44276 91.235 91.001 91.444 -4.1911 17 12 2 0 0 0 0.11836 1 18226 18226 49.527 20.446 1 1810400 48394 5110 32224 32245 47514 47514 -0.028526330504973885 VEFEGQTRW 9 Unmodified _VEFEGQTRW_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;VPS8|p.C1294Y|1|0.18|ENSG00000156931|chr3:184999740-184999740|G/A|missense_variant;ENST00000492449.5_1_3:184603882-184769810:+|nuORF nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.277638 1150.54072 0.014719 8.4824E-06 0.47519 0.00027384 0.48991 0.00028232 576.2778236893346 95.058 0.48717 91.177 90.916 91.403 -3.881 -0.091277 0.00014237 NaN 80.676 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1669500 48395 5110 32224 32245 -0.028526330504973885 VEFPLRGLD 9 Unmodified _VEFPLRGLD_ 0 0 0 ENSG00000140455|ENST00000380324|USP3;nc|ENSG00000140455|Q9Y6I4-2|USP3;USP3|p.K438E|1|0.4|ENSG00000140455|chr15:63588798-63588798|A/G|missense_variant ENSG00000140455|ENST00000380324|USP3 ENSG00000140455|ENST00000380324|USP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6797485351562 2 523.287474 1044.5604 0.18889 9.8845E-05 3.3858 0.0017718 3.5747 0.0018706 523.2877749667624 134.83 0.17686 134.83 134.71 134.88 0 5 4 2 0 0 0 0.77734 1 26683 26683 9.3831 0 1 1330900 48396 4301 32225 32246 47515 47515 0.039897429602888224 VEFQEAQAY 9 Unmodified _VEFQEAQAY_ 0 0 0 ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C ENSG00000108774|ENST00000346213|RAB5C ENSG00000108774|ENST00000346213|RAB5C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.76953125 2 542.750921 1083.48729 0.050192 2.7242E-05 0.075137 4.0781E-05 0.12533 6.8023E-05 542.7507652188852 84.127 0.77498 80.415 79.992 80.767 -3.7117 47 21 3 0 0 0 0.40602 1 16079 16079 25.399 2.2509 1 9105600 48397 2494 32226 32247 47516 47516 -0.051114305530063575 VEFQEAQAY 9 Unmodified _VEFQEAQAY_ 0 0 0 ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C ENSG00000108774|ENST00000346213|RAB5C ENSG00000108774|ENST00000346213|RAB5C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.750921 1083.48729 0.20327 0.00011032 0.066908 3.6315E-05 0.27017 0.00014664 542.7508125089981 84.104 0.75134 80.457 80.01 80.761 -3.6469 0.010692 -4.874E-05 NaN 25.399 47 21 3 NaN NaN NaN NaN 0 NaN NaN 0 9559500 48398 2494 32226 32247 -0.051114305530063575 VEFQEAQAY 9 Unmodified _VEFQEAQAY_ 0 0 0 ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C ENSG00000108774|ENST00000346213|RAB5C ENSG00000108774|ENST00000346213|RAB5C MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.750921 1083.48729 0.18095 9.8209E-05 0.17964 9.7498E-05 0.36058 0.00019571 542.7509189225623 84.376 0.69368 80.466 80.108 80.802 -3.9093 0.020434 7.3627E-05 NaN 25.399 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6585600 48399 2494 32226 32247 -0.051114305530063575 VEFYFWQHYHN 11 Unmodified _VEFYFWQHYHN_ 0 0 0 REV__AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant REV__AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69921875 3 523.901843 1568.6837 NaN NaN NaN NaN NaN NaN NaN 159.02 1 159.02 158.52 159.52 0 0 0 0 0.23698 1 31930 31930 0.45452 0 1 + 48400 12985 32227 32248 47517 47517 -0.07789625659233934 VEFYFWQHYHN 11 Unmodified _VEFYFWQHYHN_ 0 0 0 REV__AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant REV__AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6892700195312 3 523.901843 1568.6837 NaN NaN NaN NaN NaN NaN NaN 163.29 1 158.22 157.72 158.72 -5.0648 0 0 0 0.23698 1 31767 31767 0.45452 0 1 + 48401 12985 32227 32248 47518 47518 -0.07789625659233934 VEGAAAGEAP 10 Unmodified _VEGAAAGEAP_ 0 0 0 REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2148742675781 2 436.211432 870.408311 -0.34695 -0.00015134 0.56266 0.00024544 0.21571 9.4097E-05 436.2115229243625 53.238 0.66807 50.354 50.033 50.701 -2.8837 36 18 3 0 0 0 0.34654 1 10161 10161 34.402 1.616 1 1555700 + 48402 21833 32228 32249 47519 47519 -0.03207657787288554 VEGAAAGEAP 10 Unmodified _VEGAAAGEAP_ 0 0 0 REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 436.211432 870.408311 -0.34695 -0.00015134 0.56266 0.00024544 0.21571 9.4097E-05 436.2115229243625 53.238 0.66807 50.354 50.033 50.701 -2.8837 -0.076857 0.00026826 NaN 34.402 36 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1555700 + 48403 21833 32228 32249 -0.03207657787288554 VEGAAAGEAP 10 Unmodified _VEGAAAGEAP_ 0 0 0 REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 436.211432 870.408311 0.015796 6.8906E-06 -0.10263 -4.4766E-05 -0.086829 -3.7876E-05 436.211335757524 53.533 0.56579 50.446 50.213 50.779 -3.0876 0.014437 -0.00031215 NaN 34.402 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1793600 + 48404 21833 32228 32249 -0.03207657787288554 VEGAAAGEAP 10 Unmodified _VEGAAAGEAP_ 0 0 0 REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 436.211432 870.408311 -0.22854 -9.969E-05 0.33686 0.00014694 0.10833 4.7254E-05 436.2115400258031 53.589 0.57948 50.494 50.175 50.755 -3.0954 0.06242 7.1268E-05 NaN 34.402 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1633200 + 48405 21833 32228 32249 -0.03207657787288554 VEGATGVEGP 10 Unmodified _VEGATGVEGP_ 0 0 0 REV__CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant REV__CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22308349609375 2 458.224539 914.434526 NaN NaN NaN NaN NaN NaN NaN 82.743 1 79.044 78.544 79.544 -3.6985 0 0 0 0.20365 1 15782 15782 27.629 7.1752 1 + 48406 13435 32229 32250 47520 47520 -0.0261138861579866 VEGEGGGS 8 Unmodified _VEGEGGGS_ 0 0 0 REV__nc|ENSG00000166596|Q8N1V2-3|CFAP52 REV__nc|ENSG00000166596|Q8N1V2-3|CFAP52 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 691.5018310546875 1 691.289325 690.282048 0.73693 0.00050943 1.5826 0.0010941 2.3196 0.0016035 691.288750879988 170.01 0.1019 165.14 165.05 165.16 -4.873 4 2 2 0 0 0 0.73936 1 33612 33612 8.5933 0 1 8953600 + 48407 17861 32230 32251 47521 47521 -0.07548164292552428 VEGEKPKAV 9 Unmodified _VEGEKPKAV_ 0 0 0 PRDM2|p.K1590E|1|0.21|ENSG00000116731|chr1:13782563-13782563|A/G|missense_variant PRDM2|p.K1590E|1|0.21|ENSG00000116731|chr1:13782563-13782563|A/G|missense_variant PRDM2|p.K1590E|1|0.21|ENSG00000116731|chr1:13782563-13782563|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.73773193359375 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 52.541 1 49.657 49.157 50.157 -2.8837 0 0 0 0.21844 1 10000 10000 18.146 1.0335 1 48408 12826 32231 32252 47522 47522 0.054300540689382615 VEGEQALMPI 10 Unmodified _VEGEQALMPI_ 0 0 0 ENSG00000275954|ENST00000620210|TBC1D3F;nc|ENSG00000275954|A6NER0|TBC1D3F;ENSG00000278599|ENST00000621587|TBC1D3E;ENSG00000278299|ENST00000622206|TBC1D3C;ENSG00000274933|ENST00000621034|TBC1D3I;ENSG00000274808|ENST00000611257|TBC1D3B;ENSG00000274611|ENST00000620215|TBC1D3;ENSG00000274512|ENST00000612727|TBC1D3L;ENSG00000274419|ENST00000616101|TBC1D3D;ENSG00000274226|ENST00000610350|TBC1D3H;ENSG00000273513|ENST00000620247|TBC1D3K;ENSG00000260287|ENST00000569055|TBC1D3G ENSG00000275954|ENST00000620210|TBC1D3F ENSG00000275954|ENST00000620210|TBC1D3F MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7791748046875 2 543.778625 1085.5427 NaN NaN NaN NaN NaN NaN NaN 144.42 1 144.42 143.92 144.92 0 0 0 0 2.8426 1 28857 28857 0.84494 0 1 48409 8027 32232 32253 47523 47523 0.003346596430901627 VEGGVLADI 9 Unmodified _VEGGVLADI_ 0 0 0 REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2151794433594 2 436.739825 871.465098 0.026823 1.1715E-05 0.015828 6.9125E-06 0.042651 1.8627E-05 436.73978253312737 124.38 1.295 119.8 119.31 120.6 -4.5757 104 36 4 0 0 0 0.12183 1 24425 24425 48.346 2.3249 1 55949000 + 48410 15453 32233 32254 47524 47524 0.02422389769219535 VEGIVLIILP 10 Unmodified _VEGIVLIILP_ 0 0 0 REV__ENST00000429243.6_1_12:53840105-53840219:+|nuORF REV__ENST00000429243.6_1_12:53840105-53840219:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2615356445312 2 533.349543 1064.68453 NaN NaN NaN NaN NaN NaN NaN 152.02 1 146.85 146.35 147.35 -5.1759 0 0 0 0.22588 1 29461 29461 1.6526 0 1 + 48411 21599 32234 32255 47525 47525 0.15477820727778635 VEGKSPRQCLK 11 Unmodified _VEGKSPRQCLK_ 0 0 0 ENST00000466848.1_1_2:99217217-99222254:-|nuORF ENST00000466848.1_1_2:99217217-99222254:-|nuORF ENST00000466848.1_1_2:99217217-99222254:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.751953125 2 622.842622 1243.67069 NaN NaN NaN NaN NaN NaN NaN 170.9 1 166.11 165.61 166.61 -4.7898 0 0 0 0.21129 1 34714 34714 16.149 3.1066 1 48412 10139 32235 32256 47526 47526 0.0586021995700321 VEGLQRDY 8 Unmodified _VEGLQRDY_ 0 0 0 tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1 tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1 tr|U7T101|U7T101_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00756PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2637634277344 2 490.245806 978.47706 -0.33931 -0.00016635 0.97571 0.00047834 0.6364 0.00031199 490.24631159155433 44.784 0.77171 42.037 41.674 42.446 -2.7475 56 21 3 0 0 0 0.5707 1 8148 8148 24.021 0 1 8111600 48413 26320 32236 32257 47527 47527 -0.013039934875791914 VEGQFVDSY 9 Unmodified _VEGQFVDSY_ 0 0 0 ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2575073242188 2 522.237647 1042.46074 0.17617 9.2004E-05 0.28987 0.00015138 0.46605 0.00024339 522.237610099923 87.191 0.80632 83.462 82.872 83.679 -3.7289 34 22 2 0 0 0 0.19171 1 16661 16661 38.176 2.0485 1 2012300 48414 2395 32237 32258 47528 47528 -0.05879119444330172 VEGRSWYTP 9 Unmodified _VEGRSWYTP_ 0 0 0 ENST00000560567.5_1_15:64710826-64716404:+|nuORF;ENSG00000103671|ENST00000261884|TRIP4 ENST00000560567.5_1_15:64710826-64716404:+|nuORF ENST00000560567.5_1_15:64710826-64716404:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7877807617188 2 547.766906 1093.51926 0.32833 0.00017985 0.78237 0.00042855 1.1107 0.0006084 548.2674992516577 133.12 0.13445 133.12 133.04 133.17 0 5 3 2 0 0 0 0.65387 1 26315 26315 9.3831 0.78985 1 2011400 48415 2203 32238 32259 47529 47529 -0.023760180791896346 VEGRTRRPN 9 Unmodified _VEGRTRRPN_ 0 0 0 REV__ENST00000372857.7_1_1:40042222-40042411:-|nuORF REV__ENST00000372857.7_1_1:40042222-40042411:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 542.8069458007812 2 542.802146 1083.58974 NaN NaN NaN NaN NaN NaN NaN 119.47 1 115 114.5 115.5 -4.467 0 0 0 0.19711 1 22999 22999 0.12781 0 1 + 48416 21035 32239 32260 47530 47530 0.05128700029126776 VEGSWEKQ 8 Unmodified _VEGSWEKQ_ 0 0 0 ENST00000216068.8_1_22:39175605-39178756:-|nuORF;ENST00000406199.3_1_22:39176875-39178747:-|nuORF ENST00000216068.8_1_22:39175605-39178756:-|nuORF ENST00000216068.8_1_22:39175605-39178756:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7856750488281 2 481.732532 961.45051 NaN NaN NaN NaN NaN NaN NaN 152.67 1 152.67 152.17 153.17 0 0 0 0 0.21486 1 30584 30584 9.3474 0.75416 1 48417 8107 32240 32261 47531 47531 -0.031756823789010014 VEGTLGLID 9 Unmodified _VEGTLGLID_ 0 0 0 REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.239013671875 2 458.752933 915.491313 -0.19178 -8.7979E-05 0.7655 0.00035117 0.57372 0.00026319 458.75316199043914 57.953 0.5283 55.043 54.674 55.203 -2.9105 28 14 3 0 0 0 0.28156 1 11120 11120 32.305 0 1 1232300 + 48418 25355 32241 32262 47532 47532 0.030186589407207975 VEGTLGLID 9 Unmodified _VEGTLGLID_ 0 0 0 REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23870849609375 2 458.752933 915.491313 0.026926 1.2352E-05 0.17172 7.8776E-05 0.19864 9.1129E-05 458.75299181059046 58.309 0.58897 55.057 54.685 55.274 -3.2517 24 16 2 0 0 0 0.28156 1 10822 10822 39.957 0 1 658370 + 48419 25355 32241 32262 47533 47533 0.030186589407207975 VEGTVRPR 8 Unmodified _VEGTVRPR_ 0 0 0 ENST00000268638.9_1_16:85955869-85956031:+|nuORF ENST00000268638.9_1_16:85955869-85956031:+|nuORF ENST00000268638.9_1_16:85955869-85956031:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.238037109375 2 457.264333 912.514114 0.16612 7.5959E-05 0.17267 7.8956E-05 0.33879 0.00015491 457.26434897101853 130.91 1.0403 126.14 125.6 126.64 -4.7725 54 29 2 0 0 0 0.73426 1 25246 25246 9.3474 0 1 2550300 48420 8390 32242 32263 47534 47534 0.05435722848858404 VEGVRQMH 8 Unmodified _VEGVRQMH_ 0 0 0 BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant;BRWD1|p.A1391Rfs*13|1|0.54|ENSG00000185658|chr21:39210022-39210022|T/-|frameshift_variant;BRWD1|p.M1415Nfs*7|1|0.21|ENSG00000185658|chr21:39206228-39206229|-/T|frameshift_variant;BRWD1|p.R1901Kfs*6|1|0.34|ENSG00000185658|chr21:39197367-39197368|-/T|frameshift_variant;nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1 BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72137451171875 2 478.242544 954.470534 0.18957 9.0662E-05 0.49716 0.00023776 0.68674 0.00032843 478.2429886918271 34.223 0.38088 32.077 31.841 32.222 -2.1468 13 10 2 0 0 0 0.45067 1 5967 5967 30.225 0 1 454530 48421 338 32243 32264 47535 47535 -0.008522099199353761 VEHDAFIF 8 Unmodified _VEHDAFIF_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25982666015625 2 489.239993 976.465432 0.18882 9.238E-05 0.065908 3.2245E-05 0.25473 0.00012462 489.2400014564076 135.37 0.92863 135.37 134.88 135.81 0 63 26 3 0 0 0 0.31517 1 26808 26808 36.044 16.605 1 10532000 48422 1154 32244 32265 47536 47536 -0.02374190510909102 VEHDAFIF 8 Unmodified _VEHDAFIF_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27215576171875 2 489.239993 976.465432 0.15881 7.7698E-05 0.10703 5.2365E-05 0.26585 0.00013006 489.24000571419907 139.8 1.0433 135.15 134.69 135.73 -4.6439 69 29 3 0 0 0 0.31517 1 27650 27650 36.044 17.909 1 11830000 48423 1154 32244 32265 47537 47537 -0.02374190510909102 VEHDAFIF 8 Unmodified _VEHDAFIF_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2569885253906 2 489.239993 976.465432 0.197 9.6381E-05 0.0036865 1.8036E-06 0.20069 9.8185E-05 489.23988700796957 140.06 0.86392 135.11 134.64 135.5 -4.952 62 24 3 0 0 0 0.31517 1 26963 26963 36.044 16.605 1 8201500 48424 1154 32244 32265 47538 47538 -0.02374190510909102 VEHDAFIF 8 Unmodified _VEHDAFIF_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.239993 976.465432 0.010444 5.1095E-06 0.14282 6.9872E-05 0.15326 7.4981E-05 489.2400068376341 139.93 0.94937 135.08 134.6 135.54 -4.8492 -0.10041 6.6763E-05 NaN 36.044 68 26 3 NaN NaN NaN NaN 0 NaN NaN 0 9791800 48425 1154 32244 32265 -0.02374190510909102 VEHGKSRC 8 Unmodified _VEHGKSRC_ 0 0 0 HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|156|3|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|156|3|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|156|3|sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22821044921875 2 458.226894 914.439234 NaN NaN NaN NaN NaN NaN NaN 87.094 1 83.144 82.644 83.644 -3.9503 0 0 0 0.22934 1 16586 16586 0.063987 0 1 48426 11878 32245 32266 47539 47539 -0.021407829540294188 VEHHKGDEK 9 Unmodified _VEHHKGDEK_ 0 0 0 REV__MAN2A1|p.F842Lfs*16|1|0.14|ENSG00000112893|chr5:109823792-109823792|T/-|frameshift_variant REV__MAN2A1|p.F842Lfs*16|1|0.14|ENSG00000112893|chr5:109823792-109823792|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21392822265625 3 360.180717 1077.52032 0.31744 0.00011434 -1.2428 -0.00044763 -0.92535 -0.00033329 360.18024505020895 22.104 0.24628 20.63 20.484 20.73 -1.4742 10 6 2 0 0 0 0.86693 1 3777 3777 6.6304 1.7334 1 217380 + 48427 15317 32246 32267 47540 47540 -0.01533803710299253 VEHKMQFNQVL 11 Unmodified _VEHKMQFNQVL_ 0 0 0 REV__ENST00000513594.5_1_4:120438269-120460171:-|nuORF REV__ENST00000513594.5_1_4:120438269-120460171:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23748779296875 3 458.239578 1371.69691 NaN NaN NaN NaN NaN NaN NaN 99.58 1 99.58 99.08 100.08 0 0 0 0 0.22632 1 19529 19529 0.026206 0 1 + 48428 16484 32247 32268 47541 47541 0.025924891285058038 VEHLSDSTEPM 11 Unmodified _VEHLSDSTEPM_ 0 0 0 REV__ENSG00000145723|ENST00000399004|GIN1 REV__ENSG00000145723|ENST00000399004|GIN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.775634765625 2 622.77681 1243.53907 NaN NaN NaN NaN NaN NaN NaN 168.43 1 163.54 163.04 164.04 -4.8916 0 0 0 0.22501 1 33201 33201 12.241 0 1 + 48429 16849 32248 32269 47542 47542 -0.07296054921403083 VEHNYYVSA 9 Unmodified _VEHNYYVSA_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2;DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2679443359375 2 541.251089 1080.48762 0.62196 0.00033664 -0.43452 -0.00023518 0.18745 0.00010146 541.2507134546761 45.543 1.0445 45.543 45.199 46.244 0 100 29 5 0 0 0 0.01249 1 8537 8537 99.799 24.87 1 32527000 48430 1282 32249 32270 47543 47543 -0.04940010833138331 VEHNYYVSA 9 Unmodified _VEHNYYVSA_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2;DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2703857421875 2 541.251089 1080.48762 0.079143 4.2836E-05 0.19914 0.00010778 0.27828 0.00015062 541.2510195616345 48.671 1.8094 45.672 45.195 47.004 -2.999 133 51 5 0 0 0 0.045725 2 8924 8851;8924 72.968 16.791 1 35562000 48431 1282 32249 32270 47544;47545 47545 -0.04940010833138331 VEHNYYVSA 9 Unmodified _VEHNYYVSA_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2;DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2616577148438 2 541.251089 1080.48762 0.003055 1.6535E-06 0.2833 0.00015334 0.28636 0.00015499 541.2510734368964 48.711 1.7688 45.713 45.316 47.085 -2.9984 143 50 6 0 0 0 0.17734 2 8965 8965;8978 40.239 8.9709 1 31825000 48432 1282 32249 32270 47546;47547 47546 -0.04940010833138331 VEHNYYVSA 9 Unmodified _VEHNYYVSA_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2;DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.251089 1080.48762 0.12131 6.5661E-05 -0.14299 -7.7392E-05 -0.021672 -1.173E-05 541.2508773288349 48.611 0.93756 45.742 45.345 46.283 -2.869 0.074521 -9.9237E-05 NaN 99.799 103 26 5 NaN NaN NaN NaN 0 NaN NaN 0 38894000 48433 1282 32249 32270 -0.04940010833138331 VEHPAAKV 8 Unmodified _VEHPAAKV_ 0 0 0 ENST00000412860.1_1_7:42834686-42835559:+|nuORF;ENST00000544255.5_1_6:160205081-160210586:-|nuORF;ENST00000538128.5_2_6:160206507-160210586:-|nuORF;ENST00000543532.5_1_6:160205081-160210626:-|nuORF;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENSG00000120438|ENST00000321394|TCP1 ENST00000412860.1_1_7:42834686-42835559:+|nuORF;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25341796875 2 425.742702 849.470852 -0.38686 -0.0001647 0.77292 0.00032906 0.38606 0.00016436 425.7429369068531 18.811 0.42656 17.486 17.222 17.648 -1.3251 16 11 2 0 0 0 0.86749 1 2852 2852 21.747 9.2151 1 441090 48434 9588;3134 32250 32271 47548 47548 0.040095330715644195 VEHPAAKV 8 Unmodified _VEHPAAKV_ 0 0 0 ENST00000412860.1_1_7:42834686-42835559:+|nuORF;ENST00000544255.5_1_6:160205081-160210586:-|nuORF;ENST00000538128.5_2_6:160206507-160210586:-|nuORF;ENST00000543532.5_1_6:160205081-160210626:-|nuORF;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENSG00000120438|ENST00000321394|TCP1 ENST00000412860.1_1_7:42834686-42835559:+|nuORF;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 425.742702 849.470852 0.036853 1.569E-05 0.20978 8.9311E-05 0.24663 0.000105 425.74271006611053 17.587 0.3803 17.587 17.277 17.657 0 0.047578 -0.00012594 NaN 21.747 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 668130 48435 9588;3134 32250 32271 0.040095330715644195 VEHPAAKV 8 Unmodified _VEHPAAKV_ 0 0 0 ENST00000412860.1_1_7:42834686-42835559:+|nuORF;ENST00000544255.5_1_6:160205081-160210586:-|nuORF;ENST00000538128.5_2_6:160206507-160210586:-|nuORF;ENST00000543532.5_1_6:160205081-160210626:-|nuORF;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENSG00000120438|ENST00000321394|TCP1 ENST00000412860.1_1_7:42834686-42835559:+|nuORF;TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 425.742702 849.470852 -0.13271 -5.65E-05 0.22405 9.5386E-05 0.091335 3.8885E-05 425.74277048779675 18.857 0.40931 17.546 17.317 17.726 -1.3109 0.0064336 -0.00011379 NaN 21.747 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 570600 48436 9588;3134 32250 32271 0.040095330715644195 VEHRRGIP 8 Unmodified _VEHRRGIP_ 0 0 0 REV__PRAMEF14|p.H283Afs*56|1|0.3|ENSG00000204481|chr1:13344057-13344058|-/C|frameshift_variant REV__PRAMEF14|p.H283Afs*56|1|0.3|ENSG00000204481|chr1:13344057-13344058|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.774169921875 2 482.277775 962.540997 0.013301 6.4147E-06 -1.7805 -0.00085872 -1.7672 -0.0008523 482.27511767441723 102.6 0.20953 98.413 98.307 98.517 -4.1861 6 5 2 0 0 0 0.97966 1 20172 20172 11.64 5.4345 1 435830 + 48437 24502 32251 32272 47549 47549 0.05822831460045563 VEHSGRVF 8 Unmodified _VEHSGRVF_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;ENST00000523843.5_1_5:171295765-171296739:-|nuORF;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.49908447265625 3 310.831248 929.471915 -0.42652 -0.00013258 0.31744 9.8672E-05 -0.10908 -3.3905E-05 310.8312856706359 26.911 0.51555 26.911 26.635 27.15 0 36 14 3 0 0 0 8448 1 4755 4755 14.838 4.7643 1 3438600 48438 1474;5696 32252 32273 47550 47550 0.004357474404855566 VEHSGRVF 8 Unmodified _VEHSGRVF_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;ENST00000523843.5_1_5:171295765-171296739:-|nuORF;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25848388671875 2 465.743234 929.471915 0.17568 8.1821E-05 -0.13194 -6.1451E-05 0.043735 2.0369E-05 465.74315504823613 26.92 0.41071 26.92 26.668 27.079 0 26 11 3 0 0 0 0.78482 1 4714 4714 25.399 17.489 1 2065800 48439 1474;5696 32252 32273 47551 47551 0.004357474404855566 VEHVLSLL 8 Unmodified _VEHVLSLL_ 0 0 0 ENST00000566525.5_1_16:771546-771968:+|nuORF;ENST00000564640.5_1_16:771244-771968:+|nuORF;ENSG00000103254|ENST00000569529|ANTKMT ENST00000566525.5_1_16:771546-771968:+|nuORF ENST00000566525.5_1_16:771546-771968:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 455.2743835449219 2 455.273835 908.533118 NaN NaN NaN NaN NaN NaN NaN 136.63 1 136.63 136.13 137.13 0 0 0 0 0.21486 1 27079 27079 10.183 0 1 48440 2178 32253 32274 47552 47552 0.0751925941991658 VEIAAITH 8 Unmodified _VEIAAITH_ 0 0 0 ENST00000537305.5_1_12:118674470-118681279:-|nuORF;TAOK3|p.I311Nfs*13|2|0.27|ENSG00000135090|chr12:118201351-118201352|-/T|frameshift_variant;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000135090|ENST00000392533|TAOK3;TAOK1-VMP1|1|fusion;ENSG00000160551|ENST00000261716|TAOK1 ENST00000537305.5_1_12:118674470-118681279:-|nuORF ENST00000537305.5_1_12:118674470-118681279:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.2513427734375 2 427.242535 852.470518 -0.19555 -8.3547E-05 0.65985 0.00028192 0.4643 0.00019837 427.24264890716455 67.768 0.6881 64.66 64.249 64.937 -3.1086 32 19 3 0 0 0 0.64227 1 13122 13122 19.439 3.6708 1 1294100 48441 3899 32254 32275 47553 47553 0.03838113351696393 VEIAAITH 8 Unmodified _VEIAAITH_ 0 0 0 ENST00000537305.5_1_12:118674470-118681279:-|nuORF;TAOK3|p.I311Nfs*13|2|0.27|ENSG00000135090|chr12:118201351-118201352|-/T|frameshift_variant;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000135090|ENST00000392533|TAOK3;TAOK1-VMP1|1|fusion;ENSG00000160551|ENST00000261716|TAOK1 ENST00000537305.5_1_12:118674470-118681279:-|nuORF ENST00000537305.5_1_12:118674470-118681279:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 427.242535 852.470518 0.072053 3.0784E-05 0.80428 0.00034362 0.87633 0.00037441 427.2426396387759 68.091 0.72564 64.701 64.355 65.081 -3.3903 0.020606 7.259E-05 NaN 19.439 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1445300 48442 3899 32254 32275 0.03838113351696393 VEIAKQSVTL 10 Unmodified _VEIAKQSVTL_ 0 0 0 ENST00000506450.1_1_4:25624416-25624897:+|nuORF ENST00000506450.1_1_4:25624416-25624897:+|nuORF ENST00000506450.1_1_4:25624416-25624897:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7958984375 2 544.321514 1086.62847 0.49368 0.00026872 -0.41875 -0.00022794 0.074925 4.0783E-05 544.3214869757135 118.59 0.61554 113.98 113.67 114.28 -4.6106 25 16 2 0 0 0 0.52179 1 22784 22784 26.268 0 1 3247900 48443 10682 32255 32276 47554 47554 0.08862567820278855 VEIARALHTPQ 11 Unmodified _VEIARALHTPQ_ 0 0 0 RAG2|p.K499Sfs*4|2|0.32|ENSG00000175097|chr11:36592673-36592673|T/-|frameshift_variant;RAG2|p.G509Vfs*6|1|0.18|ENSG00000175097|chr11:36592645-36592645|T/-|frameshift_variant;ENSG00000175097|ENST00000311485|RAG2 RAG2|p.K499Sfs*4|2|0.32|ENSG00000175097|chr11:36592673-36592673|T/-|frameshift_variant RAG2|p.K499Sfs*4|2|0.32|ENSG00000175097|chr11:36592673-36592673|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 617.984130859375 2 617.848761 1233.68297 NaN NaN NaN NaN NaN NaN NaN 167.6 1 162.65 162.15 163.15 -4.948 0 0 0 0.23087 1 32986 32986 7.609 1.4032 1 48444 6385 32256 32277 47555 47555 0.07547579691708961 VEIDKTVLV 9 Unmodified _VEIDKTVLV_ 0 0 0 nc|ENSG00000143552|Q5VU65-2|NUP210L;NUP210L|p.F1858Lfs*11|1|0.38|ENSG00000143552|chr1:153992928-153992928|A/-|frameshift_variant;ENSG00000143552|ENST00000368559|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.23846435546875 2 508.305332 1014.59611 0.63439 0.00032246 -0.45892 -0.00023327 0.17547 8.9192E-05 508.3049802437887 101.76 0.35073 101.76 101.57 101.92 0 15 9 2 0 0 0 0.54058 1 19988 19988 12.241 0 1 1331200 48445 4503 32257 32278 47556 47556 0.08939780417279053 VEIDKTVLV 9 Unmodified _VEIDKTVLV_ 0 0 0 nc|ENSG00000143552|Q5VU65-2|NUP210L;NUP210L|p.F1858Lfs*11|1|0.38|ENSG00000143552|chr1:153992928-153992928|A/-|frameshift_variant;ENSG00000143552|ENST00000368559|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 508.305332 1014.59611 -0.38222 -0.00019428 0.019528 9.9262E-06 -0.36269 -0.00018436 508.30519807185954 105.69 0.49027 101.43 101.1 101.59 -4.2638 -0.12765 0.00024226 NaN 12.241 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1722400 48446 4503 32257 32278 0.08939780417279053 VEIDKTVLV 9 Unmodified _VEIDKTVLV_ 0 0 0 nc|ENSG00000143552|Q5VU65-2|NUP210L;NUP210L|p.F1858Lfs*11|1|0.38|ENSG00000143552|chr1:153992928-153992928|A/-|frameshift_variant;ENSG00000143552|ENST00000368559|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 508.305332 1014.59611 -0.31382 -0.00015952 0.56972 0.00028959 0.2559 0.00013007 508.30519639472277 105.87 0.46093 101.5 101.19 101.65 -4.3764 -0.059205 0.0008016 NaN 12.241 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1388700 48447 4503 32257 32278 0.08939780417279053 VEIDKTVLV 9 Unmodified _VEIDKTVLV_ 0 0 0 nc|ENSG00000143552|Q5VU65-2|NUP210L;NUP210L|p.F1858Lfs*11|1|0.38|ENSG00000143552|chr1:153992928-153992928|A/-|frameshift_variant;ENSG00000143552|ENST00000368559|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 508.305332 1014.59611 0.66921 0.00034016 -0.6142 -0.0003122 0.055015 2.7964E-05 508.30489157582696 105.63 0.45167 101.54 101.22 101.67 -4.0913 -0.019677 -0.00040199 NaN 12.241 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1563900 48448 4503 32257 32278 0.08939780417279053 VEIGVKKF 8 Unmodified _VEIGVKKF_ 0 0 0 ENSG00000147687|ENST00000276692|TATDN1 ENSG00000147687|ENST00000276692|TATDN1 ENSG00000147687|ENST00000276692|TATDN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2411804199219 2 460.284203 918.553853 -0.092414 -4.2537E-05 -0.21723 -9.9986E-05 -0.30964 -0.00014252 460.28402770197033 62.711 0.49298 62.711 62.381 62.874 0 22 13 2 0 0 0 0.35341 1 11999 11999 42.095 17.421 1 2207500 48449 4715 32258 32279 47557 47557 0.09131849799564407 VEIGVKKF 8 Unmodified _VEIGVKKF_ 0 0 0 ENSG00000147687|ENST00000276692|TATDN1 ENSG00000147687|ENST00000276692|TATDN1 ENSG00000147687|ENST00000276692|TATDN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.234619140625 2 460.284203 918.553853 -0.077728 -3.5777E-05 0.31727 0.00014603 0.23954 0.00011026 460.28426336826084 65.386 0.60284 62.339 62.173 62.776 -3.047 26 17 2 0 0 0 0.12741 1 12651 12651 58.679 35.53 1 1572700 48450 4715 32258 32279 47558 47558 0.09131849799564407 VEIGVKKF 8 Unmodified _VEIGVKKF_ 0 0 0 ENSG00000147687|ENST00000276692|TATDN1 ENSG00000147687|ENST00000276692|TATDN1 ENSG00000147687|ENST00000276692|TATDN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24652099609375 2 460.284203 918.553853 0.19879 9.1499E-05 0.30812 0.00014182 0.50691 0.00023332 460.2841549212803 65.894 0.42328 62.436 62.209 62.632 -3.4581 20 11 2 0 0 0 0.2524 1 12359 12359 47.749 22.349 1 1218200 48451 4715 32258 32279 47559 47559 0.09131849799564407 VEIGVKKF 8 Unmodified _VEIGVKKF_ 0 0 0 ENSG00000147687|ENST00000276692|TATDN1 ENSG00000147687|ENST00000276692|TATDN1 ENSG00000147687|ENST00000276692|TATDN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2393493652344 2 460.284203 918.553853 0.30427 0.00014005 -0.49469 -0.0002277 -0.19042 -8.7649E-05 460.28387042704315 65.586 0.66049 62.302 62.13 62.791 -3.2832 27 18 2 0 0 0 0.38287 1 12354 12354 54.774 35.335 1 1584700 48452 4715 32258 32279 47560 47560 0.09131849799564407 VEIITKEF 8 Unmodified _VEIITKEF_ 0 0 0 CCDC47-PMPCA|1|fusion;nc|ENSG00000165688|Q10713-2|PMPCA;ENSG00000165688|ENST00000371717|PMPCA;ENST00000462616.1_1_9:139311477-139313651:+|nuORF CCDC47-PMPCA|1|fusion CCDC47-PMPCA|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26507568359375 2 489.778951 977.543348 0.44883 0.00021983 -0.21447 -0.00010504 0.23436 0.00011478 489.77877648847743 105.61 1.187 105.61 105.07 106.26 0 83 33 3 0 0 0 8448 2 20707 20707;20824 69.105 32.599 1 11303000 48453 421 32259 32280 47561;47562 47561 0.05367822354469354 VEIITKEF 8 Unmodified _VEIITKEF_ 0 0 0 CCDC47-PMPCA|1|fusion;nc|ENSG00000165688|Q10713-2|PMPCA;ENSG00000165688|ENST00000371717|PMPCA;ENST00000462616.1_1_9:139311477-139313651:+|nuORF CCDC47-PMPCA|1|fusion CCDC47-PMPCA|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25482177734375 2 489.778951 977.543348 -0.093882 -4.5982E-05 0.41579 0.00020365 0.32191 0.00015767 489.7790404649421 109.67 1.0805 105.21 104.78 105.86 -4.4518 70 30 3 0 0 0 0.082852 3 21113 21113;21134;21136 75.761 48.325 1 23191000 48454 421 32259 32280 47563;47564;47565 47563 0.05367822354469354 VEIITKEF 8 Unmodified _VEIITKEF_ 0 0 0 CCDC47-PMPCA|1|fusion;nc|ENSG00000165688|Q10713-2|PMPCA;ENSG00000165688|ENST00000371717|PMPCA;ENST00000462616.1_1_9:139311477-139313651:+|nuORF CCDC47-PMPCA|1|fusion CCDC47-PMPCA|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26641845703125 2 489.778951 977.543348 0.40795 0.00019981 -0.16527 -8.0944E-05 0.24269 0.00011886 489.77877683010666 109.53 1.093 105.35 104.8 105.89 -4.1826 74 30 3 0 0 0 0.12741 4 21009 21005;21009;21143;21151 60.074 48.325 1 21843000 48455 421 32259 32280 47566;47567;47568;47569 47567 0.05367822354469354 VEIKKKKAKM 10 Unmodified _VEIKKKKAKM_ 0 0 0 REV__ENSG00000105379|ENST00000309244|ETFB REV__ENSG00000105379|ENST00000309244|ETFB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2928466796875 2 601.886301 1201.75805 NaN NaN NaN NaN NaN NaN NaN 99.137 1 95.005 94.505 95.505 -4.1326 0 0 0 0.22588 1 19470 19470 1.6526 1.0511 1 + 48456 14985 32260 32281 47570 47570 0.165240458985636 VEILIVKHFY 10 Unmodified _VEILIVKHFY_ 0 0 0 tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1 tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1 tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.75927734375 2 630.871174 1259.72779 NaN NaN NaN NaN NaN NaN NaN 154.24 1 149.02 148.52 149.52 -5.2209 0 0 0 0.22588 1 29901 29901 6.7232 0.51738 1 48457 26037 32261 32282 47571 47571 0.10832010505032486 VEILKPRGV 9 Unmodified _VEILKPRGV_ 0 0 0 sp|F5H8Q3|UL148_HCMVMMembraneproteinUL148OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL148PE=3SV=1 sp|F5H8Q3|UL148_HCMVMMembraneproteinUL148OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL148PE=3SV=1 sp|F5H8Q3|UL148_HCMVMMembraneproteinUL148OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL148PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.883544921875 3 337.550082 1009.62842 -0.63777 -0.00021528 0.46986 0.0001586 -0.16791 -5.6677E-05 337.8846383579952 85.724 0.65971 81.995 81.615 82.274 -3.7289 36 17 3 0 0 0 0.15889 1 16395 16395 30.703 0 1 2577400 48458 25713 32262 32283 47572 47572 0.12398612610945747 VEIQELLFP 9 Unmodified _VEIQELLFP_ 0 0 0 REV__CAND2|p.A906V|1|0.09|ENSG00000144712|chr3:12817649-12817649|C/T|missense_variant REV__CAND2|p.A906V|1|0.09|ENSG00000144712|chr3:12817649-12817649|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7764892578125 2 544.305332 1086.59611 0.32365 0.00017616 -0.59419 -0.00032342 -0.27054 -0.00014726 544.8064797880535 116.9 0.1031 116.9 116.85 116.95 0 4 2 2 0 0 0 0.81703 1 23020 23020 10.074 0 1 1077400 + 48459 13252 32263 32284 47573 47573 0.05627780417262329 VEIYPQGNHF 10 Unmodified _VEIYPQGNHF_ 0 0 0 HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|13|3|sense HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|13|3|sense HERVH-int_dup4765|chr13:43060715-43061388:-|2.073122916940509|0.3800345561863495|2.45|479.0|13|3|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.29345703125 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 110.45 1 106.22 105.72 106.72 -4.2289 0 0 0 0.22588 1 21258 21258 10.074 1.4806 1 48460 11903 32264 32285 47574 47574 -0.021160600163966592 VEKAFWRQP 9 Unmodified _VEKAFWRQP_ 0 0 0 nc|ENSG00000129103|Q8NBJ7-2|SUMF2;ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2 nc|ENSG00000129103|Q8NBJ7-2|SUMF2 nc|ENSG00000129103|Q8NBJ7-2|SUMF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7214050292969 3 387.545219 1159.61383 0.31931 0.00012375 -0.46825 -0.00018147 -0.14894 -5.7721E-05 387.54507603683857 71.434 0.46488 67.807 67.594 68.059 -3.6275 16 12 2 0 0 0 0.82357 1 13454 13454 15.248 9.465 1 844270 48461 3556 32265 32286 47575 47575 0.04040540462779063 VEKAFWRQP 9 Unmodified _VEKAFWRQP_ 0 0 0 nc|ENSG00000129103|Q8NBJ7-2|SUMF2;ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2 nc|ENSG00000129103|Q8NBJ7-2|SUMF2 nc|ENSG00000129103|Q8NBJ7-2|SUMF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 387.545219 1159.61383 -0.28686 -0.00011117 0.80897 0.00031351 0.52211 0.00020234 387.545328844604 71.333 0.31779 67.866 67.696 68.013 -3.467 0.029819 0.0010713 NaN 4.1895 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1237000 48462 3556 32265 32286 0.04040540462779063 VEKCPLCK 8 Unmodified _VEKCPLCK_ 0 0 0 ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 ENST00000485075.1_1_15:78562865-78566840:+|nuORF ENST00000485075.1_1_15:78562865-78566840:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24072265625 2 460.240624 918.466695 NaN NaN NaN NaN NaN NaN NaN 145.23 1 140.56 140.06 141.06 -4.6694 0 0 0 0.23487 1 28783 28783 0.12286 0 1 48463 4298 32266 32287 47576 47576 0.004199842619755145 VEKGNRDKITF 11 Unmodified _VEKGNRDKITF_ 0 0 0 REV__CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant REV__CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 653.6841430664062 2 653.859326 1305.7041 NaN NaN NaN NaN NaN NaN NaN 166.3 1 166.3 165.8 166.8 0 0 0 0 0.22765 1 33860 33860 10.151 1.4052 1 + 48464 13589 32267 32288 47577 47577 0.06347545000562604 VEKHVHTI 8 Unmodified _VEKHVHTI_ 0 0 0 REV__ENST00000477791.5_1_2:47134810-47142912:-|nuORF REV__ENST00000477791.5_1_2:47134810-47142912:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7734375 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 162.83 1 157.64 157.14 158.14 -5.1878 0 0 0 0.21486 1 31639 31639 12.532 1.7076 1 + 48465 22124 32268 32289 47578 47578 0.05220893508669633 VEKIDNEVLMA 11 Unmodified _VEKIDNEVLMA_ 0 0 0 nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9 nc|ENSG00000138496|Q8IXQ6-3|PARP9 nc|ENSG00000138496|Q8IXQ6-3|PARP9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7681884765625 2 630.828846 1259.64314 NaN NaN NaN NaN NaN NaN NaN 161.56 1 156.37 155.87 156.87 -5.1878 0 0 0 0.22943 1 31355 31355 8.7454 0 1 48466 4178 32269 32290 47579 47579 0.023702719061020616 VEKKCLETK 9 Unmodified _VEKKCLETK_ 0 0 0 REV__ENST00000562090.5_1_16:74487067-74506519:-|nuORF REV__ENST00000562090.5_1_16:74487067-74506519:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2166748046875 3 359.870603 1076.58998 -0.64246 -0.0002312 0.74807 0.00026921 0.10561 3.8006E-05 360.205144711569 37.47 0.41537 35.001 34.772 35.188 -2.4688 17 11 2 0 0 0 0.87708 1 6941 6941 2.086 0 1 731650 + 48467 14555 32270 32291 47580 47580 0.05474938914107952 VEKKDKPLI 9 Unmodified _VEKKDKPLI_ 0 0 0 REV__ENSG00000111885|ENST00000368468|MAN1A1 REV__ENSG00000111885|ENST00000368468|MAN1A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5633544921875 3 357.225375 1068.6543 0.69805 0.00024936 3.9183 0.0013997 4.6163 0.0016491 357.5613569519026 27.163 0.5355 25.38 25.202 25.737 -1.7821 22 14 2 0 0 0 0.10699 1 4884 4884 53.404 7.3817 1 7512300 + 48468 15269 32271 32292 47581 47581 0.12271462062562932 VEKKDKPLI 9 Unmodified _VEKKDKPLI_ 0 0 0 REV__ENSG00000111885|ENST00000368468|MAN1A1 REV__ENSG00000111885|ENST00000368468|MAN1A1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 357.225375 1068.6543 0.17595 6.2853E-05 2.9329 0.0010477 3.1089 0.0011106 357.5613231497846 26.9 0.17454 25.265 25.107 25.282 -1.6347 -0.11621 -0.001421 NaN 53.404 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 442830 + 48469 15269 32271 32292 0.12271462062562932 VEKKKETSEE 10 Unmodified _VEKKKETSEE_ 0 0 0 REV__LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant REV__LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 603.8142700195312 2 603.81425 1205.61395 NaN NaN NaN NaN NaN NaN NaN 11.61 1 11.61 11.11 12.11 0 0 0 0 0.22588 1 1553 1553 0 0 1 + 48470 18427 32272 32293 47582 47582 0.01936450881521523 VEKKKVCRIGL 11 Unmodified _VEKKKVCRIGL_ 0 0 0 REV__REL|p.N128Kfs*14|1|0.09|ENSG00000162924|chr2:60901069-60901070|-/CAAACATATAG|frameshift_variant REV__REL|p.N128Kfs*14|1|0.09|ENSG00000162924|chr2:60901069-60901070|-/CAAACATATAG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 636.4845581054688 2 636.894657 1271.77476 0.42906 0.00027327 1.154 0.000735 1.5831 0.0010083 636.8957805973257 171.15 0.2774 166.24 166.07 166.34 -4.9149 18 7 3 0 0 0 0.96118 1 33876 33876 2.7352 0 1 15801000 + 48471 17539 32273 32294 47583 47583 0.14974546784515042 VEKKLAEY 8 Unmodified _VEKKLAEY_ 0 0 0 HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant;ENSG00000128708|ENST00000264108|HAT1 HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2766418457031 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 25.51 1 25.51 25.01 26.01 0 0 0 0 0.046293 1 4430 4430 78.728 13.493 1 48472 3538 32274 32295 47584 47584 0.048469382116991255 VEKKLAEY 8 Unmodified _VEKKLAEY_ 0 0 0 HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant;ENSG00000128708|ENST00000264108|HAT1 HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27630615234375 2 490.276575 978.538597 1.0596 0.0005195 0.022037 1.0804E-05 1.0816 0.0005303 490.2763278581235 27.292 0.32235 25.51 25.415 25.737 -1.7821 13 8 2 0 0 0 0.037013 1 4867 4867 92.653 13.925 1 2054700 48473 3538 32274 32295 47585 47585 0.048469382116991255 VEKKLAEY 8 Unmodified _VEKKLAEY_ 0 0 0 HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant;ENSG00000128708|ENST00000264108|HAT1 HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27618408203125 2 490.276575 978.538597 0.28827 0.00014133 0.31186 0.0001529 0.60013 0.00029423 490.2765134423613 27.216 0.2825 25.581 25.421 25.703 -1.6347 12 7 2 0 0 0 0.039813 1 4529 4529 89.401 13.64 1 3244600 48474 3538 32274 32295 47586 47586 0.048469382116991255 VEKKLAEY 8 Unmodified _VEKKLAEY_ 0 0 0 HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant;ENSG00000128708|ENST00000264108|HAT1 HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant HAT1|p.R49Ffs*26|1|0.04|ENSG00000128708|chr2:171946738-171946739|-/ATTCC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2766418457031 2 490.276575 978.538597 -0.072474 -3.5532E-05 0.92983 0.00045588 0.85736 0.00042034 490.27680192281645 27.411 0.35429 25.489 25.329 25.683 -1.9222 15 9 2 0 0 0 0.095609 2 4567 4567;4615 63.961 12.331 1 3329200 48475 3538 32274 32295 47587;47588 47587 0.048469382116991255 VEKKNVKSGP 10 Unmodified _VEKKNVKSGP_ 0 0 0 REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.5478515625 3 362.548629 1084.62406 NaN NaN NaN NaN NaN NaN NaN 78.105 1 74.642 74.142 75.142 -3.4633 0 0 0 2.8426 1 15252 15252 6.6304 6.365 1 + 48476 22078 32275 32296 47589 47589 0.08513103397376653 VEKKRKRRKKK 11 Unmodified _VEKKRKRRKKK_ 0 0 0 REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.37890625 2 742.504618 1482.99468 NaN NaN NaN NaN NaN NaN NaN 118.11 1 118.11 117.61 118.61 0 0 0 0 0.23698 1 23265 23265 1.3295 1.0937 1 + 48477 15928 32276 32297 47590 47590 0.2725053350707185 VEKKRKRRKKK 11 Unmodified _VEKKRKRRKKK_ 0 0 0 REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.374267578125 2 742.504618 1482.99468 NaN NaN NaN NaN NaN NaN NaN 172.03 1 172.03 171.53 172.53 0 0 0 0 0.23698 1 35490 35490 1.1933 1.1933 1 + 48478 15928 32276 32297 47591 47591 0.2725053350707185 VEKKRKRRKKK 11 Unmodified _VEKKRKRRKKK_ 0 0 0 REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.397216796875 2 742.504618 1482.99468 NaN NaN NaN NaN NaN NaN NaN 173.06 1 173.06 172.56 173.56 0 0 0 0 0.22632 1 35764 35764 0 0 1 + 48479 15928 32276 32297 47592 47592 0.2725053350707185 VEKKRKRRKKK 11 Unmodified _VEKKRKRRKKK_ 0 0 0 REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.397216796875 2 742.504618 1482.99468 NaN NaN NaN NaN NaN NaN NaN 173.06 1 173.06 172.56 173.56 0 0 0 0 0.23698 1 35765 35765 0.26902 0.26902 1 + 48480 15928 32276 32297 47593 47593 0.2725053350707185 VEKKRKRRKKK 11 Unmodified _VEKKRKRRKKK_ 0 0 0 REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3762817382812 2 742.504618 1482.99468 NaN NaN NaN NaN NaN NaN NaN 146.17 1 141.48 140.98 141.98 -4.6868 0 0 0 0.22632 1 28990 28990 0 0 1 + 48481 15928 32276 32297 47594 47594 0.2725053350707185 VEKLGLKAH 9 Unmodified _VEKLGLKAH_ 0 0 0 REV__ENSG00000213047|ENST00000620048|DENND1B REV__ENSG00000213047|ENST00000620048|DENND1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.2060852050781 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 64.834 1 61.376 60.876 61.876 -3.4581 0 0 0 0.23508 1 12125 12125 1.1933 0 1 + 48482 19633 32277 32298 47595 47595 0.10006039576853709 VEKLKHLLV 9 Unmodified _VEKLKHLLV_ 0 0 0 ENST00000008527.9_1_12:107393829-107395143:-|nuORF ENST00000008527.9_1_12:107393829-107395143:-|nuORF ENST00000008527.9_1_12:107393829-107395143:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 75.524 1 75.524 75.024 76.024 0 0 0 0 0.23508 1 14669 14669 1.0715 0 1 48483 8066 32278 32299 47596 47596 0.15527758679127146 VEKLKHLLV 9 Unmodified _VEKLKHLLV_ 0 0 0 ENST00000008527.9_1_12:107393829-107395143:-|nuORF ENST00000008527.9_1_12:107393829-107395143:-|nuORF ENST00000008527.9_1_12:107393829-107395143:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20159912109375 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 156.76 1 151.47 150.97 151.97 -5.2854 0 0 0 0.23508 1 30414 30414 0.23584 0 1 48484 8066 32278 32299 47597 47597 0.15527758679127146 VEKLVKGRF 9 Unmodified _VEKLVKGRF_ 0 0 0 MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant;nc|ENSG00000166974|Q15555-2|MAPRE2;nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2 MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017822265625 3 359.225598 1074.65496 -0.54726 -0.00019659 0.82292 0.00029561 0.27566 9.9023E-05 359.2258389555653 58.72 0.55962 58.72 58.409 58.969 0 38 15 3 0 0 0 0.72996 1 11265 11265 4.897 1.0207 1 3160600 48485 5773 32279 32300 47598 47598 0.12062301502282935 VEKRRHTYR 9 Unmodified _VEKRRHTYR_ 0 0 0 REV__ENSG00000107854|ENST00000371627|TNKS2 REV__ENSG00000107854|ENST00000371627|TNKS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.760986328125 2 622.85217 1243.68979 NaN NaN NaN NaN NaN NaN NaN 158.15 1 158.15 157.65 158.65 0 0 0 0 0.23508 1 31752 31752 9.3831 0.63772 1 + 48486 15095 32280 32301 47599 47599 0.07768937362925499 VEKTGHSGT 9 Unmodified _VEKTGHSGT_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22869873046875 2 458.230156 914.445759 NaN NaN NaN NaN NaN NaN NaN 145.87 1 140.76 140.26 141.26 -5.1108 0 0 0 0.22962 1 28203 28203 14.838 0.25658 1 48487 3644 32281 32302 47600 47600 -0.0148856652166387 VEKTNDPI 8 Unmodified _VEKTNDPI_ 0 0 0 REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1 REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.240966796875 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 145.21 1 140.54 140.04 141.04 -4.6694 0 0 0 0.20896 1 28778 28778 18.135 1.0484 1 + 48488 24919 32282 32303 47601 47601 0.010254882809135779 VEKTTPTIKY 10 Unmodified _VEKTTPTIKY_ 0 0 0 IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant;ENSG00000152580|ENST00000282466|IGSF10;IGSF10|p.N1400Tfs*18|1|0.29|ENSG00000152580|chr3:151445782-151445782|T/-|frameshift_variant;IGSF10|p.K1527Rfs*29|1|0.18|ENSG00000152580|chr3:151445403-151445403|G/-|frameshift_variant IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant IGSF10|p.S2089Cfs*5|1|0.06|ENSG00000152580|chr3:151438296-151438297|-/TAACAGTTATAACA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2755737304688 2 590.334621 1178.65469 NaN NaN NaN NaN NaN NaN NaN 153.63 1 148.37 147.87 148.87 -5.2669 0 0 0 0.22552 1 29782 29782 18.146 0 1 48489 4932 32283 32304 47602 47602 0.07250836991761389 VEKVDVQY 8 Unmodified _VEKVDVQY_ 0 0 0 REV__ENSG00000154654|ENST00000400546|NCAM2 REV__ENSG00000154654|ENST00000400546|NCAM2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2761535644531 2 490.258382 978.502212 0.13672 6.7029E-05 -0.053521 -2.6239E-05 0.083201 4.079E-05 490.2583853541985 129.27 0.55154 124.64 124.54 125.09 -4.6292 19 15 2 0 0 0 0.68128 1 25551 25551 16.942 3.0362 1 1136600 + 48490 17190 32284 32305 47603 47603 0.012100613149982564 VEKWTEFR 8 Unmodified _VEKWTEFR_ 0 0 0 REV__ENST00000216019.11_1_22:38891033-38891845:-|nuORF REV__ENST00000216019.11_1_22:38891033-38891845:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7855834960938 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 179.33 1 174.47 173.97 174.97 -4.868 0 0 0 0.21486 1 35717 35717 5.2307 0 1 + 48491 20002 32285 32306 47604 47604 0.012608588174998658 VEKYREEI 8 Unmodified _VEKYREEI_ 0 0 0 REV__ENSG00000115306|ENST00000356805|SPTBN1 REV__ENSG00000115306|ENST00000356805|SPTBN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2774047851562 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 154.14 1 148.92 148.42 149.42 -5.2209 0 0 0 0.19954 1 29880 29880 24.674 2.9272 1 + 48492 15420 32286 32307 47605 47605 0.020531352350417365 VELAEQVCR 9 Unmodified _VELAEQVCR_ 0 0 0 REV__nc|ENSG00000113441|Q9UIQ6-3|LNPEP REV__nc|ENSG00000113441|Q9UIQ6-3|LNPEP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.69921875 2 523.768591 1045.52263 0.14479 7.5834E-05 -2.2264 -0.0011661 -2.0816 -0.0010903 523.7672961173326 86.56 0.46037 82.831 82.588 83.048 -3.7289 18 11 2 0 0 0 0.56623 1 16570 16570 27.629 0 1 1400500 + 48493 15343 32287 32308 47606 47606 0.0016890870317638473 VELCEIPQ 8 Unmodified _VELCEIPQ_ 0 0 0 ENST00000505602.1_1_3:128598473-128598902:+|nuORF;ENST00000515429.1_1_3:128598503-128612413:+|nuORF ENST00000505602.1_1_3:128598473-128598902:+|nuORF ENST00000505602.1_1_3:128598473-128598902:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2442626953125 2 465.733686 929.452819 0.2363 0.00011005 -0.24856 -0.00011576 -0.012262 -5.7107E-06 465.7334943118466 119.24 0.67307 114.74 114.39 115.07 -4.502 38 18 3 0 0 0 0.76308 1 23558 23558 1.7423 0 1 3240500 48494 10674 32288 32309 47607 47607 -0.014729699654594697 VELCEIPQ 8 Unmodified _VELCEIPQ_ 0 0 0 ENST00000505602.1_1_3:128598473-128598902:+|nuORF;ENST00000515429.1_1_3:128598503-128612413:+|nuORF ENST00000505602.1_1_3:128598473-128598902:+|nuORF ENST00000505602.1_1_3:128598473-128598902:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24212646484375 2 465.733686 929.452819 0.50377 0.00023462 -0.64887 -0.0003022 -0.14509 -6.7574E-05 465.7333601555778 119.42 0.60172 114.78 114.46 115.06 -4.645 30 16 2 0 0 0 0.76308 1 22968 22968 1.7423 0 1 2902100 48495 10674 32288 32309 47608 47608 -0.014729699654594697 VELDELVY 8 Unmodified _VELDELVY_ 0 0 0 REV__ENSG00000158623|ENST00000425248|COPG2;REV__ENSG00000181789|ENST00000314797|COPG1 REV__ENSG00000158623|ENST00000425248|COPG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2529602050781 2 490.252766 978.490978 NaN NaN NaN NaN NaN NaN NaN 27.635 1 25.639 25.139 26.139 -1.9962 0 0 0 0.21486 1 4632 4632 5.7604 0 1 + 48496 17339;18739 32289 32310 47609 47609 0.0008723922086346647 VELEKPPP 8 Unmodified _VELEKPPP_ 0 0 0 nc|ENSG00000054267|Q4LE39-3|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;nc|ENSG00000054267|Q4LE39-4|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-2|ARID4B nc|ENSG00000054267|Q4LE39-3|ARID4B nc|ENSG00000054267|Q4LE39-3|ARID4B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 454.7583312988281 2 454.758018 907.501483 NaN NaN NaN NaN NaN NaN NaN 77.087 1 73.623 73.123 74.123 -3.4633 0 0 0 0.22834 1 15048 15048 0.62683 0 1 48497 1262 32290 32311 47610 47610 0.04403266665940464 VELELPGY 8 Unmodified _VELELPGY_ 0 0 0 ENST00000467237.5_1_7:150774601-150776190:-|nuORF;nc|ENSG00000164896|Q14296-2|FASTK;FASTK|p.L409Cfs*14|1|0.28|ENSG00000164896|chr7:151077377-151077377|C/-|frameshift_variant;ENST00000482806.5_1_7:150774217-150777853:-|nuORF;nc|ENSG00000164896|Q14296-4|FASTK;nc|ENSG00000164896|Q14296-3|FASTK;ENSG00000164896|ENST00000297532|FASTK;ENST00000466855.1_1_7:150774601-150775027:-|nuORF;ENST00000460980.5_1_7:150773814-150775027:-|nuORF ENST00000467237.5_1_7:150774601-150776190:-|nuORF ENST00000467237.5_1_7:150774601-150776190:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.244140625 2 460.242201 918.469849 NaN NaN NaN NaN NaN NaN NaN 126.77 1 122.15 121.65 122.65 -4.6172 0 0 0 0.21181 1 24999 24999 15.768 5.5848 1 48498 5573 32291 32312 47611 47611 0.00735273912005141 VELFPIDDV 9 Unmodified _VELFPIDDV_ 0 0 0 ENSG00000237172|ENST00000449549|B3GNT9 ENSG00000237172|ENST00000449549|B3GNT9 ENSG00000237172|ENST00000449549|B3GNT9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6903686523438 2 523.773865 1045.53318 NaN NaN NaN NaN NaN NaN NaN 162.07 1 157.28 156.78 157.78 -4.7898 0 0 0 0.23508 1 32236 32236 11.64 0 1 48499 7826 32292 32313 47612 47612 0.012232146292035395 VELLCPAPS 9 Unmodified _VELLCPAPS_ 0 0 0 ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3;PLXNB3|p.L1091Cfs*36|1|0.53|ENSG00000198753|chrX:153773699-153773699|G/-|frameshift_variant;PLXNB3|p.G1176Afs*22|1|0.15|ENSG00000198753|chrX:153774191-153774191|G/-|frameshift_variant;PLXNB3|p.V1655Cfs*7|1|0.56|ENSG00000198753|chrX:153777236-153777236|G/-|frameshift_variant ENSG00000198753|ENST00000361971|PLXNB3 ENSG00000198753|ENST00000361971|PLXNB3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647033691406 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 107.37 1 107.37 106.87 107.87 0 0 0 0 0.23508 1 21113 21113 1.1933 0 1 48500 7486 32293 32314 47613 47613 0.00691620414204408 VELNAGNIVSA 11 Unmodified _VELNAGNIVSA_ 0 0 0 SYNJ1|p.P1149Rfs*44|1|0.38|ENSG00000159082|chr21:32645710-32645710|C/-|frameshift_variant;SYNJ1|p.Q1248Tfs*14|1|0.36|ENSG00000159082|chr21:32639744-32639745|-/G|frameshift_variant;nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1 SYNJ1|p.P1149Rfs*44|1|0.38|ENSG00000159082|chr21:32645710-32645710|C/-|frameshift_variant SYNJ1|p.P1149Rfs*44|1|0.38|ENSG00000159082|chr21:32645710-32645710|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7939453125 2 543.793121 1085.57169 0.21689 0.00011794 -0.15368 -8.357E-05 0.063208 3.4372E-05 543.7930191155792 82.514 0.83682 78.907 78.43 79.266 -3.6079 74 23 4 0 0 0 0.67257 1 16194 16194 13.615 1.9746 1 12084000 48501 5187 32294 32315 47614 47614 0.032325202637593975 VELNAGNIVSA 11 Unmodified _VELNAGNIVSA_ 0 0 0 SYNJ1|p.P1149Rfs*44|1|0.38|ENSG00000159082|chr21:32645710-32645710|C/-|frameshift_variant;SYNJ1|p.Q1248Tfs*14|1|0.36|ENSG00000159082|chr21:32639744-32639745|-/G|frameshift_variant;nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1 SYNJ1|p.P1149Rfs*44|1|0.38|ENSG00000159082|chr21:32645710-32645710|C/-|frameshift_variant SYNJ1|p.P1149Rfs*44|1|0.38|ENSG00000159082|chr21:32645710-32645710|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7929077148438 2 543.793121 1085.57169 0.10981 5.9714E-05 0.0079851 4.3423E-06 0.1178 6.4056E-05 543.7931052981297 82.861 0.72813 78.987 78.668 79.396 -3.8736 62 20 4 0 0 0 0.67257 1 15800 15800 13.615 1.3742 1 11597000 48502 5187 32294 32315 47615 47615 0.032325202637593975 VELNDCDPRSI 11 Unmodified _VELNDCDPRSI_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000478688.1_1_3:49849182-49849886:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7695922851562 2 630.798077 1259.5816 NaN NaN NaN NaN NaN NaN NaN 161.53 1 156.38 155.88 156.88 -5.1438 0 0 0 0.23087 1 31372 31372 7.609 2.3121 1 48503 6771 32295 32316 47616 47616 -0.037806597931648867 VELNRVPGP 9 Unmodified _VELNRVPGP_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2757873535156 2 490.779816 979.545079 0.1846 9.06E-05 -1.1262 -0.00055271 -0.94158 -0.00046211 490.77941579420695 121.94 0.55147 121.94 121.61 122.17 0 20 15 2 0 0 0 0.65155 1 24009 24009 15.847 1.9411 1 1194500 + 48504 17221 32296 32317 47617 47617 0.054488761630864246 VELQKWKYNEF 11 Unmodified _VELQKWKYNEF_ 0 0 0 ROS1|p.N1821Tfs*2|1|0.44|ENSG00000047936|chr6:117326319-117326319|T/-|frameshift_variant;ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1 ROS1|p.N1821Tfs*2|1|0.44|ENSG00000047936|chr6:117326319-117326319|T/-|frameshift_variant ROS1|p.N1821Tfs*2|1|0.44|ENSG00000047936|chr6:117326319-117326319|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.383056640625 2 742.382634 1482.75072 NaN NaN NaN NaN NaN NaN NaN 171.17 1 166.3 165.8 166.8 -4.873 0 0 0 0.23018 1 33912 33912 8.1555 2.8586 1 48505 1224 32297 32318 47618 47618 0.02864984831876427 VELRVLIHIL 10 Unmodified _VELRVLIHIL_ 0 0 0 REV__ENST00000447898.1_22:16151473-16151611:-|nuORF REV__ENST00000447898.1_22:16151473-16151611:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3009643554688 2 602.892441 1203.77033 1.0987 0.00066238 2.5595 0.0015431 3.6582 0.0022055 602.8913004095143 148.12 0.27551 143.41 143.23 143.51 -4.7095 8 7 2 0 0 0 0.75565 1 29384 29384 3.9444 0 1 2568200 + 48506 21775 32298 32319 47619 47619 0.17659405633276037 VELTLEDP 8 Unmodified _VELTLEDP_ 0 0 0 REV__nc|ENSG00000134909|A7KAX9|ARHGAP32 REV__nc|ENSG00000134909|A7KAX9|ARHGAP32 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2384033203125 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 86.702 1 82.975 82.475 83.475 -3.727 0 0 0 0.21452 1 16951 16951 13.508 0.97634 1 + 48507 16237 32299 32320 47620 47620 -0.0009733381324394941 VELTLEDP 8 Unmodified _VELTLEDP_ 0 0 0 REV__nc|ENSG00000134909|A7KAX9|ARHGAP32 REV__nc|ENSG00000134909|A7KAX9|ARHGAP32 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23797607421875 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 113.39 1 108.94 108.44 109.44 -4.4539 0 0 0 0.21486 1 22340 22340 8.5933 1.304 1 + 48508 16237 32299 32320 47621 47621 -0.0009733381324394941 VELVRRIL 8 Unmodified _VELVRRIL_ 0 0 0 REV__ENSG00000141096|ENST00000268793|DPEP3 REV__ENSG00000141096|ENST00000268793|DPEP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 499.3135986328125 2 499.329476 996.6444 NaN NaN NaN NaN NaN NaN NaN 136.7 1 131.79 131.29 132.29 -4.9127 0 0 0 0.22699 1 26274 26274 1.7423 0 1 + 48509 16611 32300 32321 47622 47622 0.1459431884784408 VEMATDMSY 9 Unmodified _VEMATDMSY_ 0 0 0 REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6978759765625 2 523.712093 1045.40963 0.21208 0.00011107 0.22304 0.00011681 0.43512 0.00022788 523.7121259654582 127.47 0.67345 122.77 122.29 122.96 -4.6998 29 18 2 0 0 0 0.67531 1 24432 24432 7.9102 2.1497 1 1590700 + 48510 14124 32301 32322 47623 47623 -0.11125527805029378 VEMKVIRG 8 Unmodified _VEMKVIRG_ 0 0 0 REV__PSMD12|p.L48Pfs*21|1|0.1|ENSG00000197170|chr17:67357544-67357545|-/GG|frameshift_variant REV__PSMD12|p.L48Pfs*21|1|0.1|ENSG00000197170|chr17:67357544-67357545|-/GG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.19659423828125 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 77.818 1 77.818 77.318 78.318 0 0 0 0 0.21486 1 15138 15138 0.40072 0 1 + 48511 19311 32302 32323 47624 47624 0.06402721779363674 VEMKVIRG 8 Unmodified _VEMKVIRG_ 0 0 0 REV__PSMD12|p.L48Pfs*21|1|0.1|ENSG00000197170|chr17:67357544-67357545|-/GG|frameshift_variant REV__PSMD12|p.L48Pfs*21|1|0.1|ENSG00000197170|chr17:67357544-67357545|-/GG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1968994140625 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 122.74 1 118.2 117.7 118.7 -4.5476 0 0 0 0.21486 1 24200 24200 1.6526 0 1 + 48512 19311 32302 32323 47625 47625 0.06402721779363674 VEMKVIRG 8 Unmodified _VEMKVIRG_ 0 0 0 REV__PSMD12|p.L48Pfs*21|1|0.1|ENSG00000197170|chr17:67357544-67357545|-/GG|frameshift_variant REV__PSMD12|p.L48Pfs*21|1|0.1|ENSG00000197170|chr17:67357544-67357545|-/GG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.1856994628906 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 100.17 1 96.182 95.682 96.682 -3.9895 0 0 0 0.21486 1 19240 19240 0.40072 0 1 + 48513 19311 32302 32323 47626 47626 0.06402721779363674 VEMLEDLL 8 Unmodified _VEMLEDLL_ 0 0 0 REV__nc|ENSG00000167780|O75908-4|SOAT2 REV__nc|ENSG00000167780|O75908-4|SOAT2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24951171875 2 481.249169 960.483784 NaN NaN NaN NaN NaN NaN NaN 76.694 1 76.694 76.194 77.194 0 0 0 0 0.17894 1 14904 14904 32.117 0 1 + 48514 17971 32303 32324 47627 47627 0.001961833487939657 VEMLLKLYGL 10 Unmodified _VEMLLKLYGL_ 0 0 0 nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F;CACNA1F|p.G604Afs*3|1|0.21|ENSG00000102001|chrX:49224860-49224860|C/-|frameshift_variant;nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F nc|ENSG00000102001|O60840-7|CACNA1F nc|ENSG00000102001|O60840-7|CACNA1F MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2578735351562 2 589.84631 1177.67807 NaN NaN NaN NaN NaN NaN NaN 120.25 1 115.78 115.28 116.28 -4.467 0 0 0 0.22588 1 23151 23151 6.2058 0 1 48515 2103 32304 32325 47628 47628 0.09633559504732148 VEMQFKLHE 9 Unmodified _VEMQFKLHE_ 0 0 0 REV__ENST00000476019.1_1_10:104120817-104120916:+|nuORF REV__ENST00000476019.1_1_10:104120817-104120916:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.72235107421875 3 387.53047 1159.56958 0.14071 5.4528E-05 2.8899 0.0011199 3.0306 0.0011744 387.53157047485183 35.77 0.41063 33.517 33.301 33.711 -2.2527 16 11 2 0 0 0 0.87265 1 6274 6274 9.544 3.6758 1 711260 + 48516 22102 32305 32326 47629 47629 -0.0038223174569793628 VEMQKHNMKV 10 Unmodified _VEMQKHNMKV_ 0 0 0 REV__ENST00000261219.7_1_12:95694195-95694231:+|nuORF REV__ENST00000261219.7_1_12:95694195-95694231:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7575073242188 2 622.317925 1242.6213 NaN NaN NaN NaN NaN NaN NaN 174.72 1 169.83 169.33 170.33 -4.8916 0 0 0 0.22588 1 34792 34792 6.2058 0 1 + 48517 20170 32306 32327 47630 47630 0.009691886765494928 VEMQLIFW 8 Unmodified _VEMQLIFW_ 0 0 0 REV__ENSG00000243978|ENST00000520821|RTL9 REV__ENSG00000243978|ENST00000520821|RTL9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.275634765625 2 533.275521 1064.53649 NaN NaN NaN NaN NaN NaN NaN 13.116 1 13.116 12.616 13.616 0 0 0 0 0.2396 1 1874 1874 0.0082765 0 1 + 48518 19806 32307 32328 47631 47631 0.006801862022484784 VEMTNHQST 9 Unmodified _VEMTNHQST_ 0 0 0 REV__nc|ENSG00000134532|P35711-4|SOX5 REV__nc|ENSG00000134532|P35711-4|SOX5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6942138671875 2 523.732206 1045.44986 0.39393 0.00020631 -0.53711 -0.0002813 -0.14318 -7.4987E-05 524.2340026237625 121.16 0.89876 116.63 116.14 117.04 -4.5305 73 24 4 0 0 0 0.67531 1 23350 23350 7.9102 0 1 10223000 + 48519 16215 32308 32329 47632 47632 -0.07104845090248091 VEMWREFTY 9 Unmodified _VEMWREFTY_ 0 0 0 REV__ENSG00000006607|ENST00000264042|FARP2 REV__ENSG00000006607|ENST00000264042|FARP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7739868164062 2 630.789524 1259.56449 NaN NaN NaN NaN NaN NaN NaN 126.96 1 122.16 121.66 122.66 -4.7958 0 0 0 0.23508 1 24368 24368 12.532 3.1484 1 + 48520 13875 32309 32330 47633 47633 -0.05490535608305436 VENDGGAGDDF 11 Unmodified _VENDGGAGDDF_ 0 0 0 REV__nc|ENSG00000161057|P35998-2|PSMC2 REV__nc|ENSG00000161057|P35998-2|PSMC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7901000976562 2 548.2149 1094.41525 0.75703 0.00041501 1.0988 0.00060238 1.8558 0.0010174 548.2154886577414 108.11 1.1891 103.98 103.63 104.82 -4.135 76 33 3 0 0 0 0.83822 1 20864 20864 14.405 5.66 1 6258000 + 48521 17450 32310 32331 47634 47634 -0.12818389697372368 VENEAMPLY 9 Unmodified _VENEAMPLY_ 0 0 0 REV__MOCS2|p.R104*|1|0.05|ENSG00000164172|chr5:53101426-53101427|-/TA|frameshift_variant REV__MOCS2|p.R104*|1|0.05|ENSG00000164172|chr5:53101426-53101427|-/TA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2815551757812 2 533.2497 1064.48485 NaN NaN NaN NaN NaN NaN NaN 160.34 1 155.55 155.05 156.05 -4.7952 0 0 0 0.23508 1 31886 31886 8.5933 0 1 + 48522 17658 32311 32332 47635 47635 -0.04481602282316999 VENFKNKY 8 Unmodified _VENFKNKY_ 0 0 0 ENST00000562317.1_1_16:78082520-78083381:-|nuORF ENST00000562317.1_1_16:78082520-78083381:-|nuORF ENST00000562317.1_1_16:78082520-78083381:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2716674804688 2 521.271824 1040.5291 -0.68282 -0.00035593 0.019948 1.0398E-05 -0.66287 -0.00034553 521.2720987008792 131.33 0.61781 126.5 126.24 126.86 -4.8355 23 17 3 0 0 0 8448 1 25209 25209 0.25148 0 1 2067400 48523 11312 32312 32333 47636 47636 0.010451699261921021 VENGLSTEL 9 Unmodified _VENGLSTEL_ 0 0 0 REV__nc|ENSG00000141956|P57071|PRDM15 REV__nc|ENSG00000141956|P57071|PRDM15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2452392578125 2 481.245472 960.476391 -0.10135 -4.8773E-05 0.060523 2.9127E-05 -0.040824 -1.9647E-05 481.2454865115772 95.925 1.4896 95.925 95.456 96.945 0 129 42 5 0 0 0 0.35556 1 18945 18945 12.241 10.786 1 164850000 + 48524 24076 32313 32334 47637 47637 -0.0054283292729451205 VENINTILK 9 Unmodified _VENINTILK_ 0 0 0 ENSG00000140057|ENST00000267584|AK7 ENSG00000140057|ENST00000267584|AK7 ENSG00000140057|ENST00000267584|AK7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27734375 2 522.308406 1042.60226 NaN NaN NaN NaN NaN NaN NaN 160.03 1 154.8 154.3 155.3 -5.2299 0 0 0 0.22193 1 31065 31065 17.113 0.96379 1 48525 4281 32314 32335 47638 47638 0.08266298648823067 VENVPAKY 8 Unmodified _VENVPAKY_ 0 0 0 ENSG00000178177|ENST00000635767|LCORL ENSG00000178177|ENST00000635767|LCORL ENSG00000178177|ENST00000635767|LCORL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2467956542969 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 151 1 145.82 145.32 146.32 -5.1759 0 0 0 0.21486 1 29269 29269 8.5933 0.68312 1 48526 6563 32315 32336 47639 47639 0.01858096006139931 VENYDGKDIV 10 Unmodified _VENYDGKDIV_ 0 0 0 tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1 tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1 tr|U7SSM4|U7SSM4_FUSNUPeptidaseTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepTPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3324584960938 2 576.282586 1150.55062 NaN NaN NaN NaN NaN NaN NaN 132.6 1 127.8 127.3 128.3 -4.799 0 0 0 0.22552 1 25522 25522 18.146 0 1 48527 26108 32316 32337 47640 47640 -0.0186348983577318 VEPCCEQIRSP 11 Unmodified _VEPCCEQIRSP_ 0 0 0 REV__ENSG00000180316|ENST00000636260|PNPLA1 REV__ENSG00000180316|ENST00000636260|PNPLA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7608642578125 2 630.789198 1259.56384 NaN NaN NaN NaN NaN NaN NaN 159.33 1 159.33 158.83 159.83 0 0 0 0 0.23429 1 31989 31989 4.897 0 1 + 48528 18682 32317 32338 47641 47641 -0.05555698319676594 VEPCCEQIRSP 11 Unmodified _VEPCCEQIRSP_ 0 0 0 REV__ENSG00000180316|ENST00000636260|PNPLA1 REV__ENSG00000180316|ENST00000636260|PNPLA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.775146484375 2 630.789198 1259.56384 NaN NaN NaN NaN NaN NaN NaN 151.29 1 146.05 145.55 146.55 -5.2365 0 0 0 0.23151 1 29324 29324 7.1017 0.89594 1 + 48529 18682 32317 32338 47642 47642 -0.05555698319676594 VEPCIVES 8 Unmodified _VEPCIVES_ 0 0 0 ALDH4A1|p.A481Qfs*17|1|0.41|ENSG00000159423|chr1:18875401-18875401|C/-|frameshift_variant;ENSG00000159423|ENST00000375341|ALDH4A1;ENST00000494072.3_3_1:19186098-19209913:-|nuORF;nc|ENSG00000159423|P30038-2|ALDH4A1 ALDH4A1|p.A481Qfs*17|1|0.41|ENSG00000159423|chr1:18875401-18875401|C/-|frameshift_variant ALDH4A1|p.A481Qfs*17|1|0.41|ENSG00000159423|chr1:18875401-18875401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 438.2115478515625 2 438.212586 874.410619 NaN NaN NaN NaN NaN NaN NaN 84.185 1 80.276 79.776 80.776 -3.9093 0 0 0 0.21486 1 16000 16000 2.3027 0 1 48530 122 32318 32339 47643 47643 -0.03160945373826962 VEPDHFKVA 9 Unmodified _VEPDHFKVA_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2747802734375 2 521.271824 1040.5291 0.56079 0.00029232 -0.44268 -0.00023076 0.1181 6.1563E-05 521.2714942103793 47.529 0.80657 47.529 47.158 47.965 0 68 22 4 0 0 0 0.15889 1 8985 8985 36.81 32.526 1 19733000 48531 3702 32319 32340 47644 47644 0.010451699261921021 VEPDHFKVA 9 Unmodified _VEPDHFKVA_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2747192382812 2 521.271824 1040.5291 -0.36719 -0.0001914 0.39862 0.00020779 0.031437 1.6387E-05 521.2719425872077 50.327 0.81243 47.446 47.045 47.857 -2.8811 72 22 4 0 0 0 0.35556 1 9498 9498 13.535 5.3794 1 21510000 48532 3702 32319 32340 47645 47645 0.010451699261921021 VEPDHFKVA 9 Unmodified _VEPDHFKVA_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2748413085938 2 521.271824 1040.5291 -0.67683 -0.00035281 0.73308 0.00038214 0.056251 2.9322E-05 521.2721328260485 50.556 0.9263 47.511 47.089 48.015 -3.0453 75 26 4 0 0 0 0.10537 2 9225 9225;9277 40.317 30.166 1 19791000 48533 3702 32319 32340 47646;47647 47646 0.010451699261921021 VEPDHFKVA 9 Unmodified _VEPDHFKVA_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2750244140625 2 521.271824 1040.5291 -0.019305 -1.0063E-05 0.16229 8.4599E-05 0.14299 7.4536E-05 521.271786049085 50.47 1.0983 47.418 46.964 48.062 -3.0517 84 31 4 0 0 0 0.11747 3 9273 9224;9273;9313 43.982 39.266 1 16968000 48534 3702 32319 32340 47648;47649;47650 47649 0.010451699261921021 VEPDMEQL 8 Unmodified _VEPDMEQL_ 0 0 0 REV__ENST00000491094.6_1_1:151147090-151147363:-|nuORF REV__ENST00000491094.6_1_1:151147090-151147363:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2333679199219 2 480.720775 959.426998 -0.010842 -5.2121E-06 1.3745 0.00066077 1.3637 0.00065556 480.72312965791645 132.09 1.0723 132.09 131.54 132.61 0 87 30 4 0 0 0 0.98792 1 26022 26022 5.2307 0 1 17355000 + 48535 22308 32320 32341 47651 47651 -0.054338642077368604 VEPELDTL 8 Unmodified _VEPELDTL_ 0 0 0 REV__ENST00000307630.4_1_7:75958368-75958587:-|nuORF REV__ENST00000307630.4_1_7:75958368-75958587:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2394104003906 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 67.356 1 63.859 63.359 64.359 -3.4965 0 0 0 0.21323 1 12635 12635 14.582 0 1 + 48536 20449 32321 32342 47652 47652 -0.0009733381323258072 VEPFTWFR 8 Unmodified _VEPFTWFR_ 0 0 0 REV__CON__Q1RMK2 REV__CON__Q1RMK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2771606445312 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 157.65 1 157.65 157.15 158.15 0 0 0 0 0.21486 1 31645 31645 8.5933 0.68312 1 + + 48537 13533 32322 32343 47653 47653 0.0022177765142714634 VEPGLITKTH 10 Unmodified _VEPGLITKTH_ 0 0 0 ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C ENSG00000149289|ENST00000278590|ZC3H12C ENSG00000149289|ENST00000278590|ZC3H12C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7713623046875 2 547.813856 1093.61316 0.33145 0.00018157 2.2183 0.0012152 2.5497 0.0013968 548.3159862378184 143.2 0.17232 143.2 143.14 143.31 0 7 4 2 0 0 0 0.68961 1 28571 28571 12.241 1.4167 1 1325400 48538 4782 32323 32344 47654 47654 0.07009701023071102 VEPGVIVLH 9 Unmodified _VEPGVIVLH_ 0 0 0 REV__ENST00000413816.6_3_12:129383828-129431963:+|nuORF REV__ENST00000413816.6_3_12:129383828-129431963:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7872009277344 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 154.31 1 149.54 149.04 150.04 -4.7684 0 0 0 0.23508 1 30671 30671 12.532 0 1 + 48539 17090 32324 32345 47655 47655 0.07734948311224343 VEPHQRHPFG 10 Unmodified _VEPHQRHPFG_ 0 0 0 REV__ENST00000437071.5_1_22:27068919-27134146:+|nuORF REV__ENST00000437071.5_1_22:27068919-27134146:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2973022460938 2 602.304521 1202.59449 0.55916 0.00033679 -1.2799 -0.00077089 -0.72074 -0.00043411 602.8039011295692 164.13 0.16968 159.06 159 159.17 -5.0648 6 4 2 0 0 0 0.744 1 31997 31997 6.7232 0.51738 1 6830400 + 48540 21674 32325 32346 47656 47656 0.001295841718729207 VEPIHVHHAL 10 Unmodified _VEPIHVHHAL_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3193969726562 2 576.31964 1150.62473 0.32952 0.00018991 -1.3201 -0.00076078 -0.99055 -0.00057087 576.8205343313059 146.58 0.17914 141.58 141.53 141.71 -5 6 4 2 0 0 0 0.48196 1 28378 28378 0.26539 0.19213 1 1856000 + 48541 15935 32326 32347 47657 47657 0.055439428370846144 VEPINESQSFL 11 Unmodified _VEPINESQSFL_ 0 0 0 REV__ENST00000216554.7_1_14:103800513-103800743:+|nuORF REV__ENST00000216554.7_1_14:103800513-103800743:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 631.4002685546875 2 631.816793 1261.61903 0.4126 0.00026069 0.80743 0.00051015 1.22 0.00077083 631.8156248359654 164.77 0.10298 164.77 164.7 164.81 0 4 2 2 0 0 0 0.96058 1 33349 33349 7.609 0.88579 1 10059000 + 48542 20019 32327 32348 47658 47658 -0.0013124525587500102 VEPNSTFCWP 10 Unmodified _VEPNSTFCWP_ 0 0 0 REV__nc|ENSG00000019991|P14210-3|HGF REV__nc|ENSG00000019991|P14210-3|HGF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2582397460938 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 168.25 1 163.36 162.86 163.86 -4.8916 0 0 0 0.22588 1 33157 33157 9.3831 2.66 1 + 48543 13978 32328 32349 47659 47659 -0.0754679753374603 VEPPWTLS 8 Unmodified _VEPPWTLS_ 0 0 0 HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|15|3|sense HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|15|3|sense HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|15|3|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 111.3 1 107.07 106.57 107.57 -4.2289 0 0 0 0.23626 1 21422 21422 0.12286 0 1 48544 11902 32329 32350 47660 47660 0.003546936318684857 VEPRRGLALA 10 Unmodified _VEPRRGLALA_ 0 0 0 REV__ENSG00000228672|ENST00000434752|PROB1 REV__ENSG00000228672|ENST00000434752|PROB1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.2308349609375 3 361.220735 1080.64038 NaN NaN NaN NaN NaN NaN NaN 97.358 1 93.26 92.76 93.76 -4.0978 0 0 0 2.8426 1 19102 19102 3.8763 1.3778 1 + 48545 19737 32330 32351 47661 47661 0.10328229354149698 VEPSENEAS 9 Unmodified _VEPSENEAS_ 0 0 0 ENSG00000100941|ENST00000216832|PNN ENSG00000100941|ENST00000216832|PNN ENSG00000100941|ENST00000216832|PNN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2354736328125 2 481.209086 960.40362 0.17971 8.6478E-05 -0.15524 -7.4701E-05 0.024474 1.1777E-05 481.208924090893 37.118 1.1568 34.78 34.241 35.398 -2.3375 53 32 2 0 0 0 0.19271 1 6604 6604 46.021 8.047 1 1387900 48546 2027 32331 32352 47662 47662 -0.07816586720707619 VEPSQRDKGY 10 Unmodified _VEPSQRDKGY_ 0 0 0 RBM44|p.Y233Kfs*26|1|0.06|ENSG00000177483|chr2:237827498-237827499|-/AAATTTGAAAATGAAGCTCAAAAAAATAA|frameshift_variant;ENSG00000177483|ENST00000316997|RBM44 RBM44|p.Y233Kfs*26|1|0.06|ENSG00000177483|chr2:237827498-237827499|-/AAATTTGAAAATGAAGCTCAAAAAAATAA|frameshift_variant RBM44|p.Y233Kfs*26|1|0.06|ENSG00000177483|chr2:237827498-237827499|-/AAATTTGAAAATGAAGCTCAAAAAAATAA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.26513671875 2 589.793652 1177.57275 0.7239 0.00042695 1.0266 0.0006055 1.7505 0.0010325 590.2957298906123 102.27 0.20575 97.947 97.874 98.08 -4.3208 8 5 2 0 0 0 0.89521 1 19578 19578 6.7232 0.51738 1 685520 48547 6516 32332 32353 47663 47663 -0.008932653673127788 VEPVFNQFFWE 11 Unmodified _VEPVFNQFFWE_ 0 0 0 REV__TIGD7|p.K426Nfs*16|1|0.44|ENSG00000140993|chr16:3299337-3299337|T/-|frameshift_variant REV__TIGD7|p.K426Nfs*16|1|0.44|ENSG00000140993|chr16:3299337-3299337|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2405700683594 3 481.231077 1440.6714 NaN NaN NaN NaN NaN NaN NaN 155.41 1 150.13 149.63 150.63 -5.2854 0 0 0 0.22632 1 30145 30145 0.172 0 1 + 48548 16608 32333 32354 47664 47664 -0.03130662122271133 VEPVSQLLPI 10 Unmodified _VEPVSQLLPI_ 0 0 0 REV__RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant REV__RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7786254882812 2 547.826432 1093.63831 NaN NaN NaN NaN NaN NaN NaN 152.61 1 152.61 152.11 153.11 0 0 0 0 2.8426 1 30572 30572 3.8763 0 1 + 48549 19153 32334 32355 47665 47665 0.09523755825671287 VEQARFASA 9 Unmodified _VEQARFASA_ 0 0 0 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2556457519531 2 489.753798 977.493044 0.19461 9.5313E-05 0.31595 0.00015474 0.51056 0.00025005 489.75395627626995 33.134 0.45702 33.134 32.85 33.307 0 23 12 2 0 0 0 0.12612 1 6011 6011 47.594 19.108 1 2596500 48550 7185 32335 32356 47666 47666 0.0033971274932582674 VEQARFASA 9 Unmodified _VEQARFASA_ 0 0 0 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2558288574219 2 489.753798 977.493044 -0.19128 -9.368E-05 1.1631 0.00056964 0.97183 0.00047596 489.7543371315897 35.423 0.32137 33.029 32.88 33.201 -2.3938 12 8 2 0 0 0 0.48707 1 6522 6522 20.415 5.8328 1 787880 48551 7185 32335 32356 47667 47667 0.0033971274932582674 VEQARFASA 9 Unmodified _VEQARFASA_ 0 0 0 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2564392089844 2 489.753798 977.493044 0.26299 0.0001288 0.2557 0.00012523 0.51869 0.00025403 489.7542526049118 35.37 0.34895 33.117 32.952 33.301 -2.2527 16 9 3 0 0 0 0.43219 1 6231 6231 23.79 1.0535 1 764290 48552 7185 32335 32356 47668 47668 0.0033971274932582674 VEQARFASA 9 Unmodified _VEQARFASA_ 0 0 0 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2554626464844 2 489.753798 977.493044 0.073673 3.6082E-05 0.75956 0.000372 0.83323 0.00040808 489.7542259071951 35.415 0.35095 33.138 32.895 33.246 -2.2766 12 9 2 0 0 0 0.33094 1 6221 6221 29.841 9.426 1 645020 48553 7185 32335 32356 47669 47669 0.0033971274932582674 VEQARFASA 9 Unmodified _VEQARFASA_ 0 0 0 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.753798 977.493044 -0.19128 -9.368E-05 1.1631 0.00056964 0.97183 0.00047596 489.7543371315897 35.423 0.32137 33.029 32.88 33.201 -2.3938 -0.075287 0.00055807 NaN 47.594 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 787880 48554 7185 32335 32356 0.0033971274932582674 VEQARFASA 9 Unmodified _VEQARFASA_ 0 0 0 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.753798 977.493044 0.26299 0.0001288 0.2557 0.00012523 0.51869 0.00025403 489.7542526049118 35.37 0.34895 33.117 32.952 33.301 -2.2527 0.012371 -0.00033075 NaN 47.594 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 764290 48555 7185 32335 32356 0.0033971274932582674 VEQARFASA 9 Unmodified _VEQARFASA_ 0 0 0 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.753798 977.493044 0.073673 3.6082E-05 0.75956 0.000372 0.83323 0.00040808 489.7542259071951 35.415 0.35095 33.138 32.895 33.246 -2.2766 0.033389 0.00016278 NaN 47.594 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 645020 48556 7185 32335 32356 0.0033971274932582674 VEQDFHLEIA 10 Unmodified _VEQDFHLEIA_ 0 0 0 ENSG00000247596|ENST00000305533|TWF2;nc|ENSG00000239732|Q9NR96-4|TLR9 ENSG00000247596|ENST00000305533|TWF2 ENSG00000247596|ENST00000305533|TWF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2872314453125 2 600.798403 1199.58225 0.47124 0.00028312 -0.26996 -0.00016219 0.20128 0.00012093 600.7981677443479 128.82 0.88182 124.01 123.59 124.47 -4.817 72 24 4 0 0 0 0.15354 1 24745 24745 28.724 24.12 1 22973000 48557 7888 32336 32357 47670 47670 -0.00955497081804424 VEQDFHLEIA 10 Unmodified _VEQDFHLEIA_ 0 0 0 ENSG00000247596|ENST00000305533|TWF2;nc|ENSG00000239732|Q9NR96-4|TLR9 ENSG00000247596|ENST00000305533|TWF2 ENSG00000247596|ENST00000305533|TWF2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 600.798403 1199.58225 0.23178 0.00013925 0.13772 8.2739E-05 0.3695 0.00022199 600.7983527746673 128.76 0.83492 124.02 123.63 124.46 -4.7408 -0.056045 0.00051496 NaN 28.724 72 23 4 NaN NaN NaN NaN 0 NaN NaN 0 17095000 48558 7888 32336 32357 -0.00955497081804424 VEQGWRDKW 9 Unmodified _VEQGWRDKW_ 0 0 0 REV__DDR1|p.P593Qfs*60|1|0.38|ENSG00000204580|chr6:30896770-30896770|C/-|frameshift_variant REV__DDR1|p.P593Qfs*60|1|0.38|ENSG00000204580|chr6:30896770-30896770|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3004150390625 2 602.298904 1202.58326 NaN NaN NaN NaN NaN NaN NaN 160.1 1 154.85 154.35 155.35 -5.2526 0 0 0 0.22962 1 31069 31069 14.838 1.7958 1 + 48559 13653 32337 32358 47671 47671 -0.009932379222391319 VEQHLLDQL 9 Unmodified _VEQHLLDQL_ 0 0 0 REV__MYO9A|p.R1021C|1|0.36|ENSG00000066933|chr15:71901280-71901280|G/A|missense_variant REV__MYO9A|p.R1021C|1|0.36|ENSG00000066933|chr15:71901280-71901280|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7755126953125 2 547.795663 1093.57677 0.3574 0.00019578 0.19386 0.0001062 0.55126 0.00030198 547.7954599037787 142.38 0.91884 137.48 136.96 137.88 -4.8982 43 25 3 0 0 0 0.35556 1 27416 27416 12.241 0 1 3278100 + 48560 14207 32338 32359 47672 47672 0.03372824126381602 VEQIFRLMRV 10 Unmodified _VEQIFRLMRV_ 0 0 0 REV__nc|ENSG00000160097|Q8NAU1-2|FNDC5 REV__nc|ENSG00000160097|Q8NAU1-2|FNDC5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 645.601806640625 2 645.871182 1289.72781 0.42103 0.00027193 -0.5624 -0.00036324 -0.14138 -9.1311E-05 645.8712711729504 172.29 0.10797 172.29 172.22 172.33 0 4 2 2 0 0 0 0.91149 1 35559 35559 6.2058 4.8763 1 5405700 + 48561 17393 32339 32360 47673 47673 0.09453687233371966 VEQIGDNKY 9 Unmodified _VEQIGDNKY_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.262451171875 2 533.264196 1064.51384 0.71045 0.00037886 -1.3319 -0.00071024 -0.62143 -0.00033138 533.2635982273583 87.722 0.52773 83.727 83.447 83.975 -3.9953 17 14 2 0 0 0 0.2219 1 16671 16671 36.127 3.3413 1 1672700 48562 4896 32340 32361 47674 47674 -0.015837416616705013 VEQKLKKLPP 10 Unmodified _VEQKLKKLPP_ 0 0 0 REV__nc|ENSG00000166886|Q15742-3|NAB2 REV__nc|ENSG00000166886|Q15742-3|NAB2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2606811523438 2 590.376623 1178.73869 NaN NaN NaN NaN NaN NaN NaN 112.53 1 108 107.5 108.5 -4.5259 0 0 0 0.22588 1 21598 21598 3.9444 0.66309 1 + 48563 17884 32341 32362 47675 47675 0.15647412879343392 VEQKQYISA 9 Unmodified _VEQKQYISA_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2820434570312 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 54.354 1 54.354 53.854 54.854 0 0 0 0 0.11195 1 10362 10362 36.127 3.3413 1 48564 7480 32342 32363 47676 47676 0.020531352350417365 VEQKQYISA 9 Unmodified _VEQKQYISA_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2825927734375 2 533.282389 1064.55022 -0.3097 -0.00016516 0.93185 0.00049694 0.62215 0.00033178 533.2826764579202 37.342 0.44506 34.874 34.605 35.05 -2.4688 22 12 2 0 0 0 0.095704 1 6902 6902 57.249 24.463 1 711740 48565 7480 32342 32363 47677 47677 0.020531352350417365 VEQKQYISA 9 Unmodified _VEQKQYISA_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2827758789062 2 533.282389 1064.55022 0.46476 0.00024785 0.35466 0.00018914 0.81942 0.00043698 533.2821931834854 37.321 0.37896 34.973 34.72 35.099 -2.3479 21 10 3 0 0 0 0.31598 1 6593 6593 30.703 13.591 1 1070600 48566 7480 32342 32363 47678 47678 0.020531352350417365 VEQKQYISA 9 Unmodified _VEQKQYISA_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2824096679688 2 533.282389 1064.55022 0.2915 0.00015545 0.30039 0.00016019 0.59189 0.00031564 533.2822933388209 37.245 0.56295 34.907 34.557 35.12 -2.3375 22 15 2 0 0 0 0.52027 1 6566 6566 18.373 7.5736 1 637000 48567 7480 32342 32363 47679 47679 0.020531352350417365 VEQKQYISA 9 Unmodified _VEQKQYISA_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.282389 1064.55022 0.10612 5.659E-05 0.73647 0.00039275 0.84259 0.00044934 533.7844442979363 34.931 0.34073 34.931 34.759 35.099 0 0.010001 0.00018734 NaN 57.249 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1050700 48568 7480 32342 32363 0.020531352350417365 VEQLLKVIE 9 Unmodified _VEQLLKVIE_ 0 0 0 HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|344|3|anti-sense HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|344|3|anti-sense HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|344|3|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.04962158203125 3 357.55338 1069.63831 -0.40909 -0.00014627 -0.82158 -0.00029376 -1.2307 -0.00044003 357.5527950895021 56.005 0.27972 56.005 55.836 56.116 0 10 7 2 0 0 0 0.88054 1 10678 10678 2.2828 0 1 513540 48569 11887 32343 32364 47680 47680 0.10627755825680651 VEQLVRKAQ 9 Unmodified _VEQLVRKAQ_ 0 0 0 REV__nc|ENSG00000023902|Q53GL0-2|PLEKHO1 REV__nc|ENSG00000023902|Q53GL0-2|PLEKHO1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5485534667969 3 357.548741 1069.62439 NaN NaN NaN NaN NaN NaN NaN 76.407 1 72.685 72.185 73.185 -3.7227 0 0 0 0.23508 1 14467 14467 6.6304 0 1 + 48570 13996 32344 32365 47681 47681 0.09236523117237994 VEQPRACA 8 Unmodified _VEQPRACA_ 0 0 0 ZNF837|p.P266Rfs*141|1|0.3|ENSG00000152475|chr19:58368536-58368536|G/-|frameshift_variant;ENSG00000152475|ENST00000597582|ZNF837 ZNF837|p.P266Rfs*141|1|0.3|ENSG00000152475|chr19:58368536-58368536|G/-|frameshift_variant ZNF837|p.P266Rfs*141|1|0.3|ENSG00000152475|chr19:58368536-58368536|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2168273925781 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 94.329 1 90.186 89.686 90.686 -4.1435 0 0 0 0.21486 1 17991 17991 8.5933 0 1 48571 4925 32345 32366 47682 47682 -0.023875877026057424 VEQYTKILIP 10 Unmodified _VEQYTKILIP_ 0 0 0 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1 SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2845458984375 2 602.352814 1202.69108 NaN NaN NaN NaN NaN NaN NaN 62.836 1 59.58 59.08 60.08 -3.2567 0 0 0 0.22588 1 11783 11783 9.3831 2.0939 1 48572 1916 32346 32367 47683 47683 0.09783713888464263 VERALLVELNK 11 Unmodified _VERALLVELNK_ 0 0 0 nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7 nc|ENSG00000083223|Q5VYS8-4|TUT7 nc|ENSG00000083223|Q5VYS8-4|TUT7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 642.3871459960938 2 642.387719 1282.76089 NaN NaN NaN NaN NaN NaN NaN 162.24 1 162.24 161.74 162.74 0 0 0 0 0.23429 1 32606 32606 4.897 1.6157 1 48573 1651 32347 32368 47684 47684 0.13081592557091426 VERARKRRLRK 11 Unmodified _VERARKRRLRK_ 0 0 0 REV__MRPS16|p.E108K|1|0.31|ENSG00000182180|chr10:73250944-73250944|C/T|missense_variant REV__MRPS16|p.E108K|1|0.31|ENSG00000182180|chr10:73250944-73250944|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27178955078125 3 489.986687 1466.93823 NaN NaN NaN NaN NaN NaN NaN 157.35 1 157.35 156.85 157.85 0 0 0 0 0.23698 1 31579 31579 0.40827 0.31342 1 + 48574 23879 32348 32369 47685 47685 0.22343905670413733 VERCHIYFL 9 Unmodified _VERCHIYFL_ 0 0 0 REV__nc|ENSG00000162711|Q96P20-3|NLRP3 REV__nc|ENSG00000162711|Q96P20-3|NLRP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2550048828125 2 590.302601 1178.59065 NaN NaN NaN NaN NaN NaN NaN 173.97 1 169.07 168.57 169.57 -4.8916 0 0 0 0.23508 1 34610 34610 11.64 0.81637 1 + 48575 17522 32349 32370 47686 47686 0.008497783538132353 VERCVKVFRWF 11 Unmodified _VERCVKVFRWF_ 0 0 0 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2717590332031 3 490.26758 1467.78091 NaN NaN NaN NaN NaN NaN NaN 145.82 1 140.71 140.21 141.21 -5.1108 0 0 0 0.22632 1 28191 28191 2.732 2.56 1 48576 6312 32350 32371 47687 47687 0.0657306501605035 VERDFGGVTN 10 Unmodified _VERDFGGVTN_ 0 0 0 ENSG00000177646|ENST00000308982|ACAD9;ENST00000505192.5_1_3:128598473-128627108:+|nuORF;ENST00000511526.5_1_3:128616515-128622914:+|nuORF ENSG00000177646|ENST00000308982|ACAD9 ENSG00000177646|ENST00000308982|ACAD9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.770263671875 2 547.26727 1092.51999 -0.013668 -7.4799E-06 0.5574 0.00030505 0.54373 0.00029757 547.2675126056148 43.937 0.79892 41.171 40.83 41.629 -2.7661 56 22 3 0 0 0 0.37059 1 7904 7904 32.786 2.1491 1 4304400 48577 6526 32351 32372 47688 47688 -0.022572234301151184 VERDFGGVTN 10 Unmodified _VERDFGGVTN_ 0 0 0 ENSG00000177646|ENST00000308982|ACAD9;ENST00000505192.5_1_3:128598473-128627108:+|nuORF;ENST00000511526.5_1_3:128616515-128622914:+|nuORF ENSG00000177646|ENST00000308982|ACAD9 ENSG00000177646|ENST00000308982|ACAD9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7689208984375 2 547.26727 1092.51999 0.014293 7.8224E-06 0.67355 0.00036861 0.68784 0.00037643 547.2675522434113 43.96 0.8385 41.212 40.8 41.638 -2.7475 54 23 3 0 0 0 0.57807 1 7910 7910 20.415 2.2682 1 3705100 48578 6526 32351 32372 47689 47689 -0.022572234301151184 VERDGKLY 8 Unmodified _VERDGKLY_ 0 0 0 ENSG00000133313|ENST00000324262|CNDP2 ENSG00000133313|ENST00000324262|CNDP2 ENSG00000133313|ENST00000324262|CNDP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2652282714844 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 163.14 1 158 157.5 158.5 -5.1438 0 0 0 0.23312 1 31730 31730 6.2058 0 1 48579 3795 32352 32373 47690 47690 0.02332883409144415 VEREDFVEA 9 Unmodified _VEREDFVEA_ 0 0 0 ENST00000464431.1_1_3:127398812-127399315:+|nuORF;nc|ENSG00000114626|Q969K4-2|ABTB1;nc|ENSG00000114626|Q969K4-4|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1 ENST00000464431.1_1_3:127398812-127399315:+|nuORF ENST00000464431.1_1_3:127398812-127399315:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7817993164062 2 547.261653 1092.50875 0.18363 0.00010049 0.96298 0.000527 1.1466 0.00062749 547.2624963959668 60.344 0.54653 57.411 57.03 57.577 -2.9333 23 15 2 0 0 0 0.67852 1 11595 11595 23.79 8.5413 1 1463600 48580 2800 32353 32374 47691 47691 -0.03380045524272646 VEREDFVEA 9 Unmodified _VEREDFVEA_ 0 0 0 ENST00000464431.1_1_3:127398812-127399315:+|nuORF;nc|ENSG00000114626|Q969K4-2|ABTB1;nc|ENSG00000114626|Q969K4-4|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1 ENST00000464431.1_1_3:127398812-127399315:+|nuORF ENST00000464431.1_1_3:127398812-127399315:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7833251953125 2 547.261653 1092.50875 0.11465 6.2741E-05 1.4423 0.00078931 1.5569 0.00085205 547.2628900161011 60.686 0.62482 57.373 56.979 57.604 -3.3139 26 17 2 0 0 0 0.73481 1 11309 11309 14.405 0 1 1275100 48581 2800 32353 32374 47692 47692 -0.03380045524272646 VEREDFVEA 9 Unmodified _VEREDFVEA_ 0 0 0 ENST00000464431.1_1_3:127398812-127399315:+|nuORF;nc|ENSG00000114626|Q969K4-2|ABTB1;nc|ENSG00000114626|Q969K4-4|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1 ENST00000464431.1_1_3:127398812-127399315:+|nuORF ENST00000464431.1_1_3:127398812-127399315:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7840576171875 2 547.261653 1092.50875 0.23447 0.00012832 0.46523 0.0002546 0.69971 0.00038292 547.2617130362157 60.567 0.28513 57.343 57.171 57.456 -3.2237 15 7 3 0 0 0 0.67852 1 11323 11323 23.79 6.6769 1 1276600 48582 2800 32353 32374 47693 47693 -0.03380045524272646 VEREFSTVR 9 Unmodified _VEREFSTVR_ 0 0 0 REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1 REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2086486816406 3 374.86825 1121.58292 -0.43553 -0.00016326 0.56815 0.00021298 0.13263 4.9718E-05 374.868357117768 52.781 0.5162 49.897 49.625 50.141 -2.8837 31 14 3 0 0 0 0.87876 1 9993 9993 3.5871 3.5871 1 2651000 + 48583 25097 32354 32375 47694 47694 0.026993423579142473 VERFLWDGLWY 11 Unmodified _VERFLWDGLWY_ 0 0 0 ENST00000502859.1_1_1:50307995-50310583:+|nuORF;nc|ENSG00000176293|P52742-2|ZNF135;ENSG00000176293|ENST00000313434|ZNF135;nc|ENSG00000176293|P52742-3|ZNF135;nc|ENSG00000176293|P52742-4|ZNF135 ENST00000502859.1_1_1:50307995-50310583:+|nuORF ENST00000502859.1_1_1:50307995-50310583:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.372314453125 2 742.372069 1482.72959 NaN NaN NaN NaN NaN NaN NaN 64.699 1 61.702 61.202 62.202 -2.9975 0 0 0 0.23634 1 12514 12514 3.2813 0.28607 1 48584 10634 32355 32376 47695 47695 0.007530195229946912 VERGHPGAP 9 Unmodified _VERGHPGAP_ 0 0 0 COL16A1|p.G1407V|1|0.42|ENSG00000084636|chr1:31655384-31655384|C/A|missense_variant COL16A1|p.G1407V|1|0.42|ENSG00000084636|chr1:31655384-31655384|C/A|missense_variant COL16A1|p.G1407V|1|0.42|ENSG00000084636|chr1:31655384-31655384|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2394104003906 2 460.240858 918.467164 NaN NaN NaN NaN NaN NaN NaN 64.09 1 60.674 60.174 61.174 -3.4158 0 0 0 0.19679 1 11986 11986 0.12781 0.054551 1 48585 615 32356 32377 47696 47696 0.004668632977086418 VERHLPVIKL 10 Unmodified _VERHLPVIKL_ 0 0 0 ENST00000358598.6_1_17:66527053-66527110:+|nuORF ENST00000358598.6_1_17:66527053-66527110:+|nuORF ENST00000358598.6_1_17:66527053-66527110:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3004150390625 2 602.38224 1202.74993 0.39135 0.00023574 -1.3599 -0.00081915 -0.96851 -0.00058341 602.3823337257044 138.37 0.20187 138.37 138.21 138.42 0 6 5 2 0 0 0 0.91149 1 27466 27466 1.3295 0 1 2572400 48586 8992 32357 32378 47697 47697 0.1566623497344608 VERIRIQRRIE 11 Unmodified _VERIRIQRRIE_ 0 0 0 REV__ENSG00000198908|ENST00000457056|GPRASP3 REV__ENSG00000198908|ENST00000457056|GPRASP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 734.3975830078125 2 734.446966 1466.87938 NaN NaN NaN NaN NaN NaN NaN 173.31 1 168.52 168.02 169.02 -4.7898 0 0 0 0.23698 1 35344 35344 1.1933 0 1 + 48587 19479 32358 32379 47698 47698 0.16461384585431915 VERKLRRKKKK 11 Unmodified _VERKLRRKKKK_ 0 0 0 REV__ENST00000432347.6_2_4:128996143-128999057:+|nuORF REV__ENST00000432347.6_2_4:128996143-128999057:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2609558105469 3 490.335204 1467.98378 NaN NaN NaN NaN NaN NaN NaN 162.52 1 157.37 156.87 157.87 -5.1438 0 0 0 0.23698 1 31580 31580 0.40827 0.40827 1 + 48588 21634 32359 32380 47699 47699 0.26851131132775663 VERKLRRKKKK 11 Unmodified _VERKLRRKKKK_ 0 0 0 REV__ENST00000432347.6_2_4:128996143-128999057:+|nuORF REV__ENST00000432347.6_2_4:128996143-128999057:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2658996582031 3 490.335204 1467.98378 NaN NaN NaN NaN NaN NaN NaN 162.55 1 157.4 156.9 157.9 -5.1438 0 0 0 0.22632 1 31588 31588 0 0 1 + 48589 21634 32359 32380 47700 47700 0.26851131132775663 VERKQVHIL 9 Unmodified _VERKQVHIL_ 0 0 0 ENST00000471546.5_1_2:197504460-197531652:+|nuORF;CCDC150|p.E447Sfs*3|1|0.16|ENSG00000144395|chr2:196676625-196676625|A/-|frameshift_variant;ENSG00000144395|ENST00000389175|CCDC150 ENST00000471546.5_1_2:197504460-197531652:+|nuORF ENST00000471546.5_1_2:197504460-197531652:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2132263183594 3 374.564502 1120.67168 -0.75658 -0.00028339 0.739 0.0002768 -0.017584 -6.5865E-06 374.56475912672835 83.524 1.0732 79.826 79.319 80.392 -3.6985 82 30 4 0 0 0 0.64461 1 16048 16048 0.0033805 0 1 6712700 48590 413 32360 32381 47701 47701 0.11616802388243741 VERKYSHY 8 Unmodified _VERKYSHY_ 0 0 0 ENSG00000273238|ENST00000610212|TMEM271 ENSG00000273238|ENST00000610212|TMEM271 ENSG00000273238|ENST00000610212|TMEM271 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2754516601562 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 89.574 1 85.53 85.03 86.03 -4.0443 0 0 0 0.21452 1 17069 17069 13.508 1.8676 1 48591 8010 32361 32382 47702 47702 -0.0018031184229130304 VERLYSDY 8 Unmodified _VERLYSDY_ 0 0 0 nc|ENSG00000182022|Q7LFX5-2|CHST15;ENSG00000182022|ENST00000435907|CHST15 nc|ENSG00000182022|Q7LFX5-2|CHST15 nc|ENSG00000182022|Q7LFX5-2|CHST15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2606811523438 2 522.753464 1043.49238 -0.39286 -0.00020537 0.023166 1.211E-05 -0.3697 -0.00019326 522.7536524974622 72.97 0.93169 69.343 68.731 69.663 -3.6275 38 25 3 0 0 0 1.0115 1 13726 13726 10.824 4.1008 1 2162000 48592 6759 32362 32383 47703 47703 -0.027631266903881624 VERTLERLRRR 11 Unmodified _VERTLERLRRR_ 0 0 0 REV__ENSG00000181323|ENST00000323675|SPEM1 REV__ENSG00000181323|ENST00000323675|SPEM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3900146484375 2 742.45004 1482.88553 NaN NaN NaN NaN NaN NaN NaN 166.91 1 166.91 166.41 167.41 0 0 0 0 0.22632 1 34063 34063 0.03141 0 1 + 48593 18728 32363 32384 47704 47704 0.16339902816957874 VERTLMEW 8 Unmodified _VERTLMEW_ 0 0 0 REV__ENSG00000091436|ENST00000375213|MAP3K20;REV__ENST00000476618.5_1_2:173940647-174074648:+|nuORF REV__ENSG00000091436|ENST00000375213|MAP3K20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2710571289062 2 532.265684 1062.51682 0.51306 0.00027308 2.2638 0.001205 2.7769 0.001478 532.2666695197892 101.87 0.67009 101.87 101.67 102.34 0 37 18 3 0 0 0 0.69887 1 20001 20001 14.582 0 1 3014900 + 48594 14571;22107 32364 32385 47705 47705 -0.011941898085069624 VERVFQSN 8 Unmodified _VERVFQSN_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25567626953125 2 489.753798 977.493044 0.19461 9.5313E-05 0.31595 0.00015474 0.51056 0.00025005 489.75395627626995 33.134 0.45702 33.134 32.85 33.307 0 23 12 2 0 0 0 0.30441 1 6063 6063 36.506 0.462 1 2596500 48595 3922 32365 32386 47706 47706 0.003397127493371954 VERVITIM 8 Unmodified _VERVITIM_ 0 0 0 ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7785949707031 2 480.78097 959.547388 0.14907 7.1672E-05 -0.23143 -0.00011127 -0.082355 -3.9595E-05 480.78082830644956 107.79 0.83652 107.79 107.37 108.21 0 58 23 3 0 0 0 0.35341 1 21188 21188 34.402 5.9149 1 7986200 48596 7808 32366 32387 47707 47707 0.06599588576534643 VERVITIM 8 Unmodified _VERVITIM_ 0 0 0 ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.245361328125 2 480.78097 959.547388 -0.22484 -0.0001081 0.32769 0.00015755 0.10284 4.9445E-05 480.7810621627617 111.86 0.9481 107.43 106.93 107.87 -4.4231 65 26 3 0 0 0 0.21795 1 22032 22032 72.968 33.011 1 10389000 48597 7808 32366 32387 47708 47708 0.06599588576534643 VERVITIM 8 Unmodified _VERVITIM_ 0 0 0 ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7693786621094 2 480.78097 959.547388 -0.031598 -1.5192E-05 0.2043 9.8225E-05 0.1727 8.3033E-05 480.78101980536854 111.98 0.90622 107.47 106.98 107.89 -4.5079 64 25 3 0 0 0 0.23681 2 21477 21440;21477 41.84 5.9627 1 8240700 48598 7808 32366 32387 47709;47710 47710 0.06599588576534643 VERVITIM 8 Unmodified _VERVITIM_ 0 0 0 ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.783447265625 2 480.78097 959.547388 0.54824 0.00026358 -0.47818 -0.0002299 0.070067 3.3687E-05 480.7807116693483 111.63 0.9431 107.4 106.97 107.91 -4.2289 69 26 3 0 0 0 0.35341 1 21472 21472 34.402 5.9149 1 11052000 48599 7808 32366 32387 47711 47711 0.06599588576534643 VESAIKAVV 9 Unmodified _VESAIKAVV_ 0 0 0 ENSG00000134453|ENST00000379888|RBM17;ENST00000476706.5_1_10:6154982-6157516:+|nuORF ENSG00000134453|ENST00000379888|RBM17 ENSG00000134453|ENST00000379888|RBM17 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2407531738281 2 458.279118 914.543683 -0.11577 -5.3055E-05 0.49739 0.00022794 0.38162 0.00017489 458.27924361163974 131.55 0.31462 126.92 126.75 127.07 -4.6359 12 8 2 0 0 0 0.34411 1 25921 25921 29.082 0 1 1270400 48600 3854 32367 32388 47712 47712 0.08299242074338053 VESAIKAVV 9 Unmodified _VESAIKAVV_ 0 0 0 ENSG00000134453|ENST00000379888|RBM17;ENST00000476706.5_1_10:6154982-6157516:+|nuORF ENSG00000134453|ENST00000379888|RBM17 ENSG00000134453|ENST00000379888|RBM17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 458.279118 914.543683 0.18267 8.3716E-05 -1.698 -0.00077814 -1.5153 -0.00069442 458.27811446612424 131.8 0.4559 127 126.83 127.28 -4.799 0.042461 -0.0019007 NaN 29.082 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1345900 48601 3854 32367 32388 0.08299242074338053 VESAKRFLE 9 Unmodified _VESAKRFLE_ 0 0 0 ENST00000555252.5_1_14:64855058-64907131:+|nuORF;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENSG00000100714|ENST00000652337|MTHFD1;ENST00000413059.1_1_X:57420873-57421110:-|nuORF ENST00000555252.5_1_14:64855058-64907131:+|nuORF ENST00000555252.5_1_14:64855058-64907131:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 105.42 1 101.16 100.66 101.66 -4.2638 0 0 0 0.23508 1 20747 20747 8.1555 1.4324 1 48602 2007 32368 32389 47713 47713 0.0461712798901317 VESCDSHGRG 10 Unmodified _VESCDSHGRG_ 0 0 0 REV__ENST00000567153.1_1_16:30195563-30196215:-|nuORF REV__ENST00000567153.1_1_16:30195563-30196215:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6803588867188 2 523.71963 1045.42471 NaN NaN NaN NaN NaN NaN NaN 138.49 1 133.85 133.35 134.35 -4.6413 0 0 0 0.22323 1 27344 27344 24.021 0.87215 1 + 48603 23126 32369 32390 47714 47714 -0.09618899892825539 VESGGGVVQP 10 Unmodified _VESGGGVVQP_ 0 0 0 nc|ENSG00000270550|P0DP03|IGHV3-30-5;nc|ENSG00000211955|P0DP02|IGHV3-30-3;nc|ENSG00000211955|P01772|IGHV3-33 nc|ENSG00000270550|P0DP03|IGHV3-30-5 nc|ENSG00000270550|P0DP03|IGHV3-30-5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2578125 2 464.740357 927.46616 1.0789 0.0005014 -0.29857 -0.00013876 0.78032 0.00036265 464.74014173020873 26.112 0.44369 24.33 24.039 24.483 -1.7821 21 12 2 0 0 0 0.6091 1 4619 4619 27.629 6.0918 1 783060 48604 12585 32370 32391 47715 47715 -0.0004739586186133238 VESHRKGC 8 Unmodified _VESHRKGC_ 0 0 0 ENSG00000263761|ENST00000581492|GDF2 ENSG00000263761|ENST00000581492|GDF2 ENSG00000263761|ENST00000581492|GDF2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2244567871094 2 458.226894 914.439234 NaN NaN NaN NaN NaN NaN NaN 52.782 1 49.695 49.195 50.195 -3.0876 0 0 0 0.22684 1 9710 9710 0.62683 0.37535 1 48605 7973 32371 32392 47716 47716 -0.0214078295401805 VESINEELF 9 Unmodified _VESINEELF_ 0 0 0 REV__nc|ENSG00000110218|Q96RD7-2|PANX1 REV__nc|ENSG00000110218|Q96RD7-2|PANX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2694091796875 2 540.266404 1078.51826 0.80772 0.00043638 -0.39226 -0.00021193 0.41546 0.00022446 540.2659815954812 106.29 0.93005 102.2 101.67 102.6 -4.0913 79 26 4 0 0 0 0.36931 1 20473 20473 27.629 3.6082 1 19255000 + 48606 15195 32372 32393 47717 47717 -0.017862772387616133 VESKKVEKV 9 Unmodified _VESKKVEKV_ 0 0 0 REV__ENSG00000178750|ENST00000315099|STX19 REV__ENSG00000178750|ENST00000315099|STX19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6788330078125 2 523.316232 1044.61791 0.067806 3.5484E-05 0.24771 0.00012963 0.31551 0.00016511 523.316322546665 20.21 0.52182 18.814 18.55 19.072 -1.3966 39 14 4 0 0 0 0.054822 1 3378 3378 76.825 12.864 1 14462000 + 48607 18617 32373 32394 47718 47718 0.09738585165860059 VESKKVEKV 9 Unmodified _VESKKVEKV_ 0 0 0 REV__ENSG00000178750|ENST00000315099|STX19 REV__ENSG00000178750|ENST00000315099|STX19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6854858398438 2 523.316232 1044.61791 -0.85723 -0.0004486 1.045 0.00054688 0.18779 9.8274E-05 523.3167460383913 20.097 0.41697 18.772 18.595 19.012 -1.3251 37 11 4 0 0 0 0.091344 1 3103 3103 67.838 6.2363 1 15769000 + 48608 18617 32373 32394 47719 47719 0.09738585165860059 VESKKVEKV 9 Unmodified _VESKKVEKV_ 0 0 0 REV__ENSG00000178750|ENST00000315099|STX19 REV__ENSG00000178750|ENST00000315099|STX19 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 523.316232 1044.61791 0.13977 7.3144E-05 0.10902 5.7053E-05 0.24879 0.0001302 523.3162371703567 18.735 0.41459 18.735 18.511 18.926 0 -0.047357 -0.00030982 NaN 110.79 30 11 4 NaN NaN NaN NaN 0 NaN NaN 0 11855000 + 48609 18617 32373 32394 0.09738585165860059 VESKKVEKV 9 Unmodified _VESKKVEKV_ 0 0 0 REV__ENSG00000178750|ENST00000315099|STX19 REV__ENSG00000178750|ENST00000315099|STX19 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.316232 1044.61791 -0.81274 -0.00042532 0.92024 0.00048157 0.1075 5.6255E-05 523.3166682789137 20.434 0.49125 18.799 18.57 19.061 -1.6351 0.016225 0.00053922 NaN 110.79 42 13 4 NaN NaN NaN NaN 0 NaN NaN 0 10409000 + 48610 18617 32373 32394 0.09738585165860059 VESKVHVM 8 Unmodified _VESKVHVM_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16973876953125 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 103.34 1 103.34 102.84 103.84 0 0 0 0 0.21486 1 20307 20307 0.45834 0 1 + 48611 14076 32374 32395 47720 47720 0.018144425083619353 VESKVSYPA 9 Unmodified _VESKVSYPA_ 0 0 0 DLG3|p.E469*|1|0.18|ENSG00000082458|chrX:70454311-70454312|-/TGAA|frameshift_variant;ENSG00000082458|ENST00000374360|DLG3 DLG3|p.E469*|1|0.18|ENSG00000082458|chrX:70454311-70454312|-/TGAA|frameshift_variant DLG3|p.E469*|1|0.18|ENSG00000082458|chrX:70454311-70454312|-/TGAA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2582092285156 2 490.258382 978.502212 0.53092 0.00026029 -0.24125 -0.00011827 0.28967 0.00014202 490.25819333195915 81.048 0.81431 81.048 80.591 81.406 0 55 22 3 0 0 0 0.25976 1 15851 15851 17.113 0 1 16036000 48612 845 32375 32396 47721 47721 0.012100613149982564 VESLDTEKY 9 Unmodified _VESLDTEKY_ 0 0 0 REV__ENST00000337495.9_2_1:41651853-41707763:-|nuORF REV__ENST00000337495.9_2_1:41651853-41707763:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7698974609375 2 542.263862 1082.51317 0.091099 4.94E-05 -0.50678 -0.00027481 -0.41568 -0.00022541 542.2635070733113 76.836 1.2518 73.07 72.678 73.93 -3.7664 124 35 5 0 0 0 0.62102 1 14494 14494 11.64 3.7301 1 109510000 + 48613 20676 32376 32397 47722 47722 -0.024785811013543935 VESLELLSG 9 Unmodified _VESLELLSG_ 0 0 0 REV__ENST00000493197.5_1_5:177652418-177656944:-|nuORF REV__ENST00000493197.5_1_5:177652418-177656944:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.1751708984375 3 316.174569 945.501877 NaN NaN NaN NaN NaN NaN NaN 124.94 1 124.94 124.44 125.44 0 0 0 0 0.23508 1 24640 24640 1.0715 0 1 + 48614 22343 32377 32398 47723 47723 0.026946415951670133 VESLLQKF 8 Unmodified _VESLLQKF_ 0 0 0 ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3;METTL3|p.D114G|1|0.5|ENSG00000165819|chr14:21503555-21503555|T/C|missense_variant ENST00000396522.6_1_14:21967741-21972178:-|nuORF ENST00000396522.6_1_14:21967741-21972178:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.772216796875 2 482.279118 962.543683 0.004227 2.0386E-06 0.093431 4.506E-05 0.097658 4.7099E-05 482.27898325821826 113.28 0.58409 113.28 112.97 113.55 0 24 16 2 0 0 0 0.83238 1 22306 22306 29.841 0 1 1673000 48615 5666 32378 32399 47724 47724 0.06091242074330694 VESLLQKF 8 Unmodified _VESLLQKF_ 0 0 0 ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3;METTL3|p.D114G|1|0.5|ENSG00000165819|chr14:21503555-21503555|T/C|missense_variant ENST00000396522.6_1_14:21967741-21972178:-|nuORF ENST00000396522.6_1_14:21967741-21972178:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 482.2704772949219 2 482.279118 962.543683 0.21967 0.00010594 -0.77182 -0.00037223 -0.55215 -0.00026629 482.2785415215516 117.52 0.52855 113.02 112.72 113.25 -4.502 23 14 2 0 0 0 8448 1 23180 23180 36.506 0 1 1445200 48616 5666 32378 32399 47725 47725 0.06091242074330694 VESLLQKF 8 Unmodified _VESLLQKF_ 0 0 0 ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3;METTL3|p.D114G|1|0.5|ENSG00000165819|chr14:21503555-21503555|T/C|missense_variant ENST00000396522.6_1_14:21967741-21972178:-|nuORF ENST00000396522.6_1_14:21967741-21972178:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.772216796875 2 482.279118 962.543683 0.366 0.00017652 -0.51791 -0.00024978 -0.15191 -7.3264E-05 482.2787662651607 117.38 0.60523 113.02 112.62 113.23 -4.3585 23 16 2 0 0 0 0.89108 1 22604 22604 13.615 0 1 944600 48617 5666 32378 32399 47726 47726 0.06091242074330694 VESPLSVSF 9 Unmodified _VESPLSVSF_ 0 0 0 nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B;ENSG00000153561|ENST00000283632|RMND5A nc|ENSG00000145916|Q96G75-2|RMND5B nc|ENSG00000145916|Q96G75-2|RMND5B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 482.2378845214844 2 482.752933 963.491313 0.036628 1.7682E-05 0.041758 2.0159E-05 0.078386 3.7841E-05 482.75288299255226 152.16 0.75804 152.16 151.65 152.41 0 34 20 2 0 0 0 0.41217 1 30517 30517 19.626 14.91 1 2816800 48618 4629 32379 32400 47727 47727 0.008106589407248066 VESPLSVSF 9 Unmodified _VESPLSVSF_ 0 0 0 nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B;ENSG00000153561|ENST00000283632|RMND5A nc|ENSG00000145916|Q96G75-2|RMND5B nc|ENSG00000145916|Q96G75-2|RMND5B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 482.752933 963.491313 0.21194 0.00010232 0.011196 5.4049E-06 0.22314 0.00010772 482.7528947312558 157.07 0.78168 152.28 151.88 152.66 -4.7885 0.011985 0.00010564 NaN 19.626 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2682800 48619 4629 32379 32400 0.008106589407248066 VESPLSVSF 9 Unmodified _VESPLSVSF_ 0 0 0 nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B;ENSG00000153561|ENST00000283632|RMND5A nc|ENSG00000145916|Q96G75-2|RMND5B nc|ENSG00000145916|Q96G75-2|RMND5B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 482.752933 963.491313 0.22449 0.00010837 -0.034716 -1.6759E-05 0.18977 9.1613E-05 482.75279965343526 157.63 0.7066 152.35 151.97 152.68 -5.2854 0.081689 6.1315E-05 NaN 19.626 38 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3421400 48620 4629 32379 32400 0.008106589407248066 VESPLSVSF 9 Unmodified _VESPLSVSF_ 0 0 0 nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B;ENSG00000153561|ENST00000283632|RMND5A nc|ENSG00000145916|Q96G75-2|RMND5B nc|ENSG00000145916|Q96G75-2|RMND5B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.752933 963.491313 0.31081 0.00015004 -0.3422 -0.0001652 -0.031387 -1.5152E-05 482.7528778672834 157.55 0.68039 152.28 151.94 152.62 -5.2712 0.011679 -0.00023556 NaN 19.626 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3402900 48621 4629 32379 32400 0.008106589407248066 VESRYGFG 8 Unmodified _VESRYGFG_ 0 0 0 REV__ENST00000485445.5_1_12:111082708-111085062:+|nuORF REV__ENST00000485445.5_1_12:111082708-111085062:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2240295410156 2 457.721967 913.429381 0.26568 0.00012161 0.28653 0.00013115 0.55222 0.00025276 457.7219793661411 21.803 0.34284 21.803 21.602 21.945 0 25 9 3 0 0 0 0.52597 1 3639 3639 26.884 2.2098 1 3896200 + 48622 22221 32380 32401 47728 47728 -0.030796476877526402 VESSKNASEDN 11 Unmodified _VESSKNASEDN_ 0 0 0 ENSG00000151304|ENST00000339397|SRFBP1;SRFBP1|p.N236Kfs*5|4|0.26|ENSG00000151304|chr5:122020434-122020435|-/A|frameshift_variant;SRFBP1|p.Y270Lfs*8|1|0.12|ENSG00000151304|chr5:122020539-122020540|-/T|frameshift_variant ENSG00000151304|ENST00000339397|SRFBP1 ENSG00000151304|ENST00000339397|SRFBP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.270751953125 2 590.259839 1178.50512 NaN NaN NaN NaN NaN NaN NaN 162.13 1 157.34 156.84 157.84 -4.7898 0 0 0 0.23018 1 32251 32251 8.1555 1.9497 1 48623 4858 32381 32402 47729 47729 -0.07698760088783274 VESSKNASEDN 11 Unmodified _VESSKNASEDN_ 0 0 0 ENSG00000151304|ENST00000339397|SRFBP1;SRFBP1|p.N236Kfs*5|4|0.26|ENSG00000151304|chr5:122020434-122020435|-/A|frameshift_variant;SRFBP1|p.Y270Lfs*8|1|0.12|ENSG00000151304|chr5:122020539-122020540|-/T|frameshift_variant ENSG00000151304|ENST00000339397|SRFBP1 ENSG00000151304|ENST00000339397|SRFBP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.259033203125 2 590.259839 1178.50512 NaN NaN NaN NaN NaN NaN NaN 162.2 1 157.41 156.91 157.91 -4.7898 0 0 0 0.23429 1 32269 32269 4.897 0.141 1 48624 4858 32381 32402 47730 47730 -0.07698760088783274 VESTLAVDL 9 Unmodified _VESTLAVDL_ 0 0 0 ENST00000320451.6_1_19:9679704-9695196:-|nuORF ENST00000320451.6_1_19:9679704-9695196:-|nuORF ENST00000320451.6_1_19:9679704-9695196:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1751708984375 3 316.174569 945.501877 NaN NaN NaN NaN NaN NaN NaN 158.54 1 153.26 152.76 153.76 -5.2748 0 0 0 0.23508 1 30769 30769 2.7352 0 1 48625 8711 32382 32403 47731 47731 0.026946415951329072 VESTLRRKY 9 Unmodified _VESTLRRKY_ 0 0 0 ENST00000487440.5_1_3:47281337-47324087:-|nuORF;nc|ENSG00000088727|Q9HAQ2-2|KIF9;ENSG00000088727|ENST00000684063|KIF9 ENST00000487440.5_1_3:47281337-47324087:-|nuORF ENST00000487440.5_1_3:47281337-47324087:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3323364257812 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 132.03 1 127.39 126.89 127.89 -4.6399 0 0 0 0.19684 1 26022 26022 0.12781 0 1 48626 1732 32383 32404 47732 47732 0.0765590814596635 VESVTGGPSP 10 Unmodified _VESVTGGPSP_ 0 0 0 ENST00000408031.1_1_22:47070518-47073075:+|nuORF ENST00000408031.1_1_22:47070518-47073075:+|nuORF ENST00000408031.1_1_22:47070518-47073075:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2589111328125 2 465.232364 928.450176 0.96176 0.00044744 -1.0476 -0.00048738 -0.085853 -3.9942E-05 465.231889183564 26.952 0.47849 25.17 24.794 25.272 -1.7821 20 13 2 0 0 0 0.42569 1 4780 4780 29.082 0 1 671130 48627 9556 32384 32405 47733 47733 -0.01691102098743613 VESYRKIKE 9 Unmodified _VESYRKIKE_ 0 0 0 nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN;nc|ENSG00000167693|Q6DKJ4-2|NXN;ENST00000575455.5_1_17:722628-800182:-|nuORF nc|ENSG00000167693|Q6DKJ4-3|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3213500976562 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 126.96 1 126.96 126.46 127.46 0 0 0 0 0.22621 1 25059 25059 15.847 4.2069 1 48628 5834 32385 32406 47734 47734 0.06533086051808823 VETAGLGIN 9 Unmodified _VETAGLGIN_ 0 0 0 ENST00000544075.5_1_11:73101650-73105363:+|nuORF ENST00000544075.5_1_11:73101650-73105363:+|nuORF ENST00000544075.5_1_11:73101650-73105363:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2237548828125 2 437.23745 872.460347 -0.12147 -5.311E-05 -0.30802 -0.00013468 -0.42949 -0.00018779 437.2373329036224 81.468 0.58118 77.911 77.655 78.236 -3.557 27 16 2 0 0 0 0.12935 1 15978 15978 2.8827 0.23963 1 947440 48629 11105 32386 32407 47735 47735 0.01901505626483413 VETDWHMVY 9 Unmodified _VETDWHMVY_ 0 0 0 ENST00000467224.5_1_3:25761125-25775431:-|nuORF;nc|ENSG00000151092|Q96IV0-4|NGLY1;ENST00000496726.5_1_3:25760953-25775482:-|nuORF;nc|ENSG00000151092|Q96IV0-5|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1 ENST00000467224.5_1_3:25761125-25775431:-|nuORF ENST00000467224.5_1_3:25761125-25775431:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2625732421875 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 127.17 1 122.47 121.97 122.97 -4.6998 0 0 0 0.23508 1 24464 24464 7.9102 1.187 1 48630 4849 32387 32408 47736 47736 -0.07546797533723293 VETEEVVD 8 Unmodified _VETEEVVD_ 0 0 0 PTPRC|p.A1189V|1|0.39|ENSG00000081237|chr1:198754325-198754325|C/T|missense_variant PTPRC|p.A1189V|1|0.39|ENSG00000081237|chr1:198754325-198754325|C/T|missense_variant PTPRC|p.A1189V|1|0.39|ENSG00000081237|chr1:198754325-198754325|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2419128417969 2 460.21638 918.418207 NaN NaN NaN NaN NaN NaN NaN 104.77 1 104.77 104.27 105.27 0 0 0 0 0.19954 1 20591 20591 24.674 5.2349 1 48631 12847 32388 32409 47737 47737 -0.044265145725489674 VETEVNWPI 9 Unmodified _VETEVNWPI_ 0 0 0 REV__ENSG00000139218|ENST00000369367|SCAF11 REV__ENSG00000139218|ENST00000369367|SCAF11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7775268554688 2 543.776939 1085.53933 0.32211 0.00017516 -3.7113 -0.0020181 -3.3892 -0.001843 544.2748481676981 102.47 1.2366 98.149 97.573 98.809 -4.3208 68 35 3 0 0 0 0.46541 1 19509 19509 21.747 1.293 1 4719700 + 48632 16509 32389 32410 47738 47738 -2.2671392343909247E-05 VETEVNWPI 9 Unmodified _VETEVNWPI_ 0 0 0 REV__ENSG00000139218|ENST00000369367|SCAF11 REV__ENSG00000139218|ENST00000369367|SCAF11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.793701171875 2 543.776939 1085.53933 0.5808 0.00031582 -3.31 -0.0017999 -2.7292 -0.0014841 544.2751144150842 102.11 1.2848 98.088 97.598 98.882 -4.0212 73 36 3 0 0 0 0.40602 1 19527 19527 25.399 1.3787 1 4736900 + 48633 16509 32389 32410 47739 47739 -2.2671392343909247E-05 VETFAFQA 8 Unmodified _VETFAFQA_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.Q85Kfs*14|1|0.05|ENSG00000080824|chr14:102086034-102086034|G/-|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 457.2196350097656 2 456.726718 911.438883 0.018954 8.6569E-06 0.40654 0.00018568 0.4255 0.00019434 456.72685191751356 125.84 0.779 121.25 120.83 121.61 -4.5984 49 21 3 0 0 0 8448 1 24795 24795 64.86 49.382 1 3317300 48634 1874;1620 32390 32411 47740 47740 -0.0203787940224629 VETFAFQA 8 Unmodified _VETFAFQA_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.Q85Kfs*14|1|0.05|ENSG00000080824|chr14:102086034-102086034|G/-|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 456.726718 911.438883 0.2613 0.00011934 0.052908 2.4165E-05 0.31421 0.00014351 456.72660720097815 121 0.79704 121 120.64 121.44 0 -0.1838 -0.00023435 NaN 64.86 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2180300 48635 1874;1620 32390 32411 -0.0203787940224629 VETFAFQA 8 Unmodified _VETFAFQA_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.Q85Kfs*14|1|0.05|ENSG00000080824|chr14:102086034-102086034|G/-|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 456.726718 911.438883 0.23731 0.00010839 0.30584 0.00013969 0.54315 0.00024807 456.7268177214869 125.98 1.0504 121.22 120.83 121.88 -4.7681 0.03139 -3.3081E-06 NaN 64.86 48 29 2 NaN NaN NaN NaN 0 NaN NaN 0 2689200 48636 1874;1620 32390 32411 -0.0203787940224629 VETFAFQA 8 Unmodified _VETFAFQA_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.Q85Kfs*14|1|0.05|ENSG00000080824|chr14:102086034-102086034|G/-|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 456.726718 911.438883 0.18714 8.5471E-05 0.35591 0.00016255 0.54305 0.00024802 456.7268150911754 125.92 0.88608 121.27 120.88 121.77 -4.6495 0.0899 4.2429E-05 NaN 64.86 42 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2709900 48637 1874;1620 32390 32411 -0.0203787940224629 VETLADISA 9 Unmodified _VETLADISA_ 0 0 0 REV__nc|ENSG00000116882|Q9NYQ3-2|HAO2 REV__nc|ENSG00000116882|Q9NYQ3-2|HAO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.244140625 2 459.742565 917.470577 0.21613 9.9365E-05 0.042501 1.9539E-05 0.25863 0.0001189 459.74250559869716 113.76 0.95047 113.76 113.34 114.29 0 72 26 4 0 0 0 0.034899 2 22443 22347;22443 8.9129 0 1 23098000 + 48638 24012 32391 32412 47741;47742 47742 0.008540685610455512 VETLADISA 9 Unmodified _VETLADISA_ 0 0 0 REV__nc|ENSG00000116882|Q9NYQ3-2|HAO2 REV__nc|ENSG00000116882|Q9NYQ3-2|HAO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2444152832031 2 459.742565 917.470577 0.12832 5.8996E-05 0.13763 6.3276E-05 0.26596 0.00012227 459.74255461188 118.1 0.97391 113.6 113.1 114.08 -4.502 76 27 4 0 0 0 0.043162 2 23250 23250;23351 8.9129 0 1 22845000 + 48639 24012 32391 32412 47743;47744 47743 0.008540685610455512 VETLADISA 9 Unmodified _VETLADISA_ 0 0 0 REV__nc|ENSG00000116882|Q9NYQ3-2|HAO2 REV__nc|ENSG00000116882|Q9NYQ3-2|HAO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2444152832031 2 459.742565 917.470577 0.29623 0.00013619 0.21131 9.7149E-05 0.50754 0.00023334 459.7426903849038 122.64 0.95569 118.11 117.72 118.68 -4.5305 33 26 2 0 0 0 0.10537 1 23584 23584 11.749 0 1 1383800 + 48640 24012 32391 32412 47745 47745 0.008540685610455512 VETLHRARL 9 Unmodified _VETLHRARL_ 0 0 0 nc|ENSG00000008323|Q3KR16-3|PLEKHG6;nc|ENSG00000008323|Q3KR16-2|PLEKHG6;ENSG00000008323|ENST00000684764|PLEKHG6 nc|ENSG00000008323|Q3KR16-3|PLEKHG6 nc|ENSG00000008323|Q3KR16-3|PLEKHG6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7744750976562 2 547.825089 1093.63563 NaN NaN NaN NaN NaN NaN NaN 9.6853 1 8.8911 8.3911 9.3911 -0.79424 0 0 0 0.1963 1 1143 1143 0 0 1 48641 1043 32392 32413 47746 47746 0.0925534521136342 VETLRVLM 8 Unmodified _VETLRVLM_ 0 0 0 REV__nc|ENSG00000196208|Q4ZG55-4|GREB1 REV__nc|ENSG00000196208|Q4ZG55-4|GREB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76824951171875 2 480.78097 959.547388 -0.22484 -0.0001081 0.32769 0.00015755 0.10284 4.9445E-05 480.7810621627617 111.86 0.9481 107.43 106.93 107.87 -4.4231 65 26 3 0 0 0 0.49114 2 21974 21961;21974 28.487 6.7402 1 10389000 + 48642 19226 32393 32414 47747;47748 47748 0.06599588576534643 VETPHGGMQ 9 Unmodified _VETPHGGMQ_ 0 0 0 REV__ENSG00000063244|ENST00000308924|U2AF2 REV__ENSG00000063244|ENST00000308924|U2AF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72357177734375 2 478.218734 954.422915 -0.18276 -8.7399E-05 1.1064 0.00052912 0.92368 0.00044172 478.2186293782613 104.39 0.67938 100.17 99.756 100.44 -4.2183 26 19 2 0 0 0 0.34411 1 20553 20553 29.082 7.3349 1 1280600 + 48643 14159 32394 32415 47749 47749 -0.05611908910771035 VETPRGKPP 9 Unmodified _VETPRGKPP_ 0 0 0 ENSG00000100292|ENST00000216117|HMOX1 ENSG00000100292|ENST00000216117|HMOX1 ENSG00000100292|ENST00000216117|HMOX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2633361816406 2 490.779816 979.545079 0.14114 6.9269E-05 0.16602 8.1481E-05 0.30716 0.00015075 490.77980385933 34.177 1.0499 31.961 31.353 32.403 -2.2158 52 29 2 0 0 0 0.80521 1 5985 5985 6.7232 0 1 663410 48644 1947 32395 32416 47750 47750 0.054488761630864246 VETRWRIR 8 Unmodified _VETRWRIR_ 0 0 0 ENST00000396503.7_1_16:11931646-11945380:-|nuORF ENST00000396503.7_1_16:11931646-11945380:-|nuORF ENST00000396503.7_1_16:11931646-11945380:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 373.12750244140625 3 372.552597 1114.63596 -0.53061 -0.00019768 -1.2078 -0.00044995 -1.7384 -0.00064763 372.5521353382151 60.436 0.53184 57.212 56.994 57.526 -3.2237 24 14 3 0 0 0 1.0267 1 11341 11341 0 0 1 1139300 48645 9446 32396 32417 47751 47751 0.08322764931199345 VETSFLISQR 10 Unmodified _VETSFLISQR_ 0 0 0 REV__ENSG00000186716|ENST00000305877|BCR REV__ENSG00000186716|ENST00000305877|BCR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.26220703125 2 590.322045 1178.62954 NaN NaN NaN NaN NaN NaN NaN 19.064 1 17.429 16.929 17.929 -1.6351 0 0 0 0.22588 1 2855 2855 8.1555 1.9497 1 + 48646 19049 32397 32418 47752 47752 0.04736782189183941 VETSSSMVTC 10 Unmodified _VETSSSMVTC_ 0 0 0 ENST00000599575.5_1_19:41084031-41086238:+|nuORF ENST00000599575.5_1_19:41084031-41086238:+|nuORF ENST00000599575.5_1_19:41084031-41086238:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.258056640625 2 522.222825 1042.4311 NaN NaN NaN NaN NaN NaN NaN 128.68 1 123.94 123.44 124.44 -4.7408 0 0 0 0.22588 1 24762 24762 6.7232 0 1 48647 11694 32398 32419 47753 47753 -0.08842142776302353 VETSVTYY 8 Unmodified _VETSVTYY_ 0 0 0 ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B ENST00000514123.5_1_16:69458586-69482095:+|nuORF ENST00000514123.5_1_16:69458586-69482095:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2452392578125 2 481.22929 960.444028 -0.10623 -5.1123E-05 -0.4341 -0.0002089 -0.54034 -0.00026003 481.22904979672006 71.707 0.77316 71.707 71.316 72.089 0 32 21 2 0 0 0 0.25036 1 13904 13904 40.449 21.01 1 4902900 48648 2158 32399 32420 47754 47754 -0.037776203302883005 VETSVTYY 8 Unmodified _VETSVTYY_ 0 0 0 ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B ENST00000514123.5_1_16:69458586-69482095:+|nuORF ENST00000514123.5_1_16:69458586-69482095:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2454833984375 2 481.22929 960.444028 NaN NaN NaN NaN NaN NaN NaN 75.72 1 71.997 71.497 72.497 -3.7227 0 0 0 0.19492 1 14326 14326 26.341 4.5946 1 48649 2158 32399 32420 47755 47755 -0.037776203302883005 VETSVTYY 8 Unmodified _VETSVTYY_ 0 0 0 ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B ENST00000514123.5_1_16:69458586-69482095:+|nuORF ENST00000514123.5_1_16:69458586-69482095:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2454528808594 2 481.22929 960.444028 NaN NaN NaN NaN NaN NaN NaN 75.57 1 71.936 71.436 72.436 -3.6337 0 0 0 0.036493 1 14365 14365 56.541 31.867 1 48650 2158 32399 32420 47756 47756 -0.037776203302883005 VETWRIVK 8 Unmodified _VETWRIVK_ 0 0 0 REV__ENSG00000157077|ENST00000287727|ZFYVE9 REV__ENSG00000157077|ENST00000287727|ZFYVE9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.1166076660156 3 344.206315 1029.59712 NaN NaN NaN NaN NaN NaN NaN 116.76 1 116.76 116.26 117.26 0 0 0 0 0.21486 1 22994 22994 1.6526 0 1 + 48651 17280 32400 32421 47757 47757 0.08350039576839663 VEVAISLMR 9 Unmodified _VEVAISLMR_ 0 0 0 REV__ENSG00000170085|ENST00000429602|SIMC1 REV__ENSG00000170085|ENST00000429602|SIMC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 509.3177490234375 2 509.291702 1016.56885 NaN NaN NaN NaN NaN NaN NaN 122.51 1 117.96 117.46 118.46 -4.5476 0 0 0 0.19657 1 24152 24152 4.897 0 1 + 48652 18140 32401 32422 47758 47758 0.06122973605260995 VEVDSIVVP 9 Unmodified _VEVDSIVVP_ 0 0 0 OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant;OTOGL|p.K2146Nfs*40|2|0.16|ENSG00000165899|chr12:80367724-80367724|A/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7359313964844 2 478.768583 955.522613 -0.003037 -1.454E-06 0.10871 5.2047E-05 0.10567 5.0593E-05 478.76853361076337 132.38 0.85397 127.74 127.31 128.16 -4.6399 53 23 3 0 0 0 0.095051 1 26133 26133 57.471 15.377 1 5632800 48653 5672 32402 32423 47759 47759 0.04307231974826209 VEVDSIVVP 9 Unmodified _VEVDSIVVP_ 0 0 0 OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant;OTOGL|p.K2146Nfs*40|2|0.16|ENSG00000165899|chr12:80367724-80367724|A/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.768583 955.522613 -0.067043 -3.2098E-05 0.25322 0.00012123 0.18618 8.9135E-05 478.76862148917985 127.78 0.76878 127.78 127.34 128.11 0 -0.024662 0.00023699 NaN 57.471 46 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5391900 48654 5672 32402 32423 0.04307231974826209 VEVDSIVVP 9 Unmodified _VEVDSIVVP_ 0 0 0 OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant;OTOGL|p.K2146Nfs*40|2|0.16|ENSG00000165899|chr12:80367724-80367724|A/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.768583 955.522613 0.039089 1.8715E-05 0.2219 0.00010624 0.26099 0.00012496 478.7686061931255 132.66 0.92545 127.81 127.39 128.31 -4.8527 0.0075591 0.000207 NaN 57.471 50 25 3 NaN NaN NaN NaN 0 NaN NaN 0 6840000 48655 5672 32402 32423 0.04307231974826209 VEVDSIVVP 9 Unmodified _VEVDSIVVP_ 0 0 0 OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant;OTOGL|p.K2146Nfs*40|2|0.16|ENSG00000165899|chr12:80367724-80367724|A/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 478.768583 955.522613 0.18887 9.0426E-05 -0.43542 -0.00020847 -0.24655 -0.00011804 478.7684482981387 132.68 0.90347 127.88 127.39 128.29 -4.799 0.082048 -0.00042241 NaN 57.471 49 25 3 NaN NaN NaN NaN 0 NaN NaN 0 4745000 48656 5672 32402 32423 0.04307231974826209 VEVDTFMEAY 10 Unmodified _VEVDTFMEAY_ 0 0 0 ENST00000357802.6_1_22:42970741-42976277:-|nuORF;ENSG00000189306|ENST00000323013|RRP7A ENST00000357802.6_1_22:42970741-42976277:-|nuORF ENST00000357802.6_1_22:42970741-42976277:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2992553710938 2 602.265547 1202.51654 NaN NaN NaN NaN NaN NaN NaN 109.13 1 109.13 108.63 109.63 0 0 0 0 0.22588 1 21457 21457 10.824 0.75 1 48657 7223 32403 32424 47760 47760 -0.07661654319008449 VEVEDVNNY 9 Unmodified _VEVEDVNNY_ 0 0 0 tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1 tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1 tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27783203125 2 540.745836 1079.47712 0.3143 0.00016995 -0.022767 -1.2311E-05 0.29153 0.00015764 540.7457353065653 31.294 0.52683 31.294 31.004 31.53 0 37 14 3 0 0 0 0.17935 1 5689 5689 39.95 9.3132 1 3232000 48658 26293 32404 32425 47761 47761 -0.05944038278221342 VEVEVEVE 8 Unmodified _VEVEVEVE_ 0 0 0 FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant REV__FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant REV__FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.16839599609375 3 311.158807 930.454593 NaN NaN NaN NaN NaN NaN NaN 81.15 1 77.593 77.093 78.093 -3.557 0 0 0 0.21486 1 15845 15845 3.5965 0 1 48659 11829 32405 32426 47762 47762 -0.013416376758414117 VEVGTDLVP 9 Unmodified _VEVGTDLVP_ 0 0 0 nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9 nc|ENSG00000122507|Q3SYG4-6|BBS9 nc|ENSG00000122507|Q3SYG4-6|BBS9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1700744628906 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 178.32 1 173.41 172.91 173.91 -4.9088 0 0 0 0.23508 1 35569 35569 2.7352 0 1 48660 3226 32406 32427 47763 47763 0.024666589407047468 VEVKGQLLLVF 11 Unmodified _VEVKGQLLLVF_ 0 0 0 REV__CNNM1|p.G751Afs*29|1|0.49|ENSG00000119946|chr10:99377126-99377126|G/-|frameshift_variant REV__CNNM1|p.G751Afs*29|1|0.49|ENSG00000119946|chr10:99377126-99377126|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7807006835938 2 622.884281 1243.75401 NaN NaN NaN NaN NaN NaN NaN 170.42 1 165.54 165.04 166.04 -4.873 0 0 0 0.23379 1 33722 33722 5.2969 0 1 + 48661 13460 32407 32428 47764 47764 0.14188279676523052 VEVKWIEY 8 Unmodified _VEVKWIEY_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2737426757812 2 533.2844 1064.55425 0.42893 0.00022874 0.4083 0.00021774 0.83723 0.00044648 533.2844722236719 135.3 0.45007 130.41 130.12 130.57 -4.8951 20 12 2 0 0 0 0.095609 5 25994 25963;25992;25994;26008;26016 63.961 29.559 1 1254800 48662 4896 32408 32429 47765;47766;47767;47768;47769 47767 0.024552247287601858 VEVKWIEY 8 Unmodified _VEVKWIEY_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.287109375 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 135.07 1 130.24 129.74 130.74 -4.8307 0 0 0 0.20488 1 26005 26005 21.537 3.3906 1 48663 4896 32408 32429 47770 47770 0.024552247287601858 VEVKWIEY 8 Unmodified _VEVKWIEY_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.28515625 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 135.32 1 130.49 129.99 130.99 -4.8307 0 0 0 0.18524 1 26051 26051 29.841 10.584 1 48664 4896 32408 32429 47771 47771 0.024552247287601858 VEVKWIEY 8 Unmodified _VEVKWIEY_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 533.2844 1064.55425 0.099684 5.316E-05 2.7456 0.0014642 2.8453 0.0015174 533.286898753279 130.08 0.10745 130.08 129.99 130.1 0 -0.16482 0.0024211 NaN 63.961 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1661400 48665 4896 32408 32429 0.024552247287601858 VEVLLLELLY 10 Unmodified _VEVLLLELLY_ 0 0 0 MROH2A|p.L1521Sfs*47|1|0.43|ENSG00000185038|chr2:233829730-233829730|C/-|frameshift_variant;ENSG00000185038|ENST00000389758|MROH2A MROH2A|p.L1521Sfs*47|1|0.43|ENSG00000185038|chr2:233829730-233829730|C/-|frameshift_variant MROH2A|p.L1521Sfs*47|1|0.43|ENSG00000185038|chr2:233829730-233829730|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2845458984375 2 602.36539 1202.71623 NaN NaN NaN NaN NaN NaN NaN 118.93 1 118.93 118.43 119.43 0 0 0 0 0.22588 1 23425 23425 6.7232 0.99131 1 48666 6955 32409 32430 47772 47772 0.1229776869104171 VEVLPNVNY 9 Unmodified _VEVLPNVNY_ 0 0 0 ENSG00000133243|ENST00000255608|BTBD2;nc|ENSG00000133243|Q9BX70-2|BTBD2;ENST00000589685.2_1_19:1986489-1990887:-|nuORF ENSG00000133243|ENST00000255608|BTBD2 ENSG00000133243|ENST00000255608|BTBD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6996459960938 2 523.779482 1045.54441 -0.30854 -0.00016161 0.87861 0.0004602 0.57006 0.00029859 523.7799553143864 71.396 0.49414 68.147 67.85 68.345 -3.2492 17 13 2 0 0 0 0.58699 1 13915 13915 25.399 0 1 1378300 48667 3792 32410 32431 47773 47773 0.023460367233838042 VEVPMQNV 8 Unmodified _VEVPMQNV_ 0 0 0 REV__nc|ENSG00000172262|P52739-2|ZNF131 REV__nc|ENSG00000172262|P52739-2|ZNF131 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2245178222656 2 458.233853 914.453153 NaN NaN NaN NaN NaN NaN NaN 28.165 1 26.41 25.91 26.91 -1.7552 0 0 0 0.22699 1 4745 4745 1.4551 0 1 + 48668 18278 32411 32432 47774 47774 -0.007495502455867609 VEVRMCPK 8 Unmodified _VEVRMCPK_ 0 0 0 REV__nc|ENSG00000011258|Q05BQ5-3|MBTD1 REV__nc|ENSG00000011258|Q05BQ5-3|MBTD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7804260253906 2 481.251523 960.488493 -0.10342 -4.9772E-05 1.7544 0.00084429 1.6509 0.00079452 481.2532946354363 96.335 1.0014 92.416 91.918 92.919 -3.9194 63 28 3 0 0 0 8448 1 18431 18431 1.7423 0 1 3603100 + 48669 13933 32412 32433 47775 47775 0.006667890105632068 VEVRQVTSF 9 Unmodified _VEVRQVTSF_ 0 0 0 REV__ENST00000343738.10_1_16:15227887-15231353:-|nuORF REV__ENST00000343738.10_1_16:15227887-15231353:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2653198242188 2 532.790381 1063.56621 0.07762 4.1355E-05 0.67825 0.00036137 0.75587 0.00040272 532.7907687879277 114.72 0.34509 114.72 114.55 114.89 0 13 9 2 0 0 0 0.10047 1 22589 22589 71.922 24.174 1 1453300 + 48670 20736 32413 32434 47776 47776 0.036968414719467546 VEVTEQSNQF 10 Unmodified _VEVTEQSNQF_ 0 0 0 REV__ENSG00000173769|ENST00000309765|TOPAZ1 REV__ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.267333984375 2 590.777667 1179.54078 0.46106 0.00027239 0.20015 0.00011824 0.66121 0.00039063 591.279305893129 77.045 0.76991 73.279 73.018 73.788 -3.7664 34 21 2 0 0 0 0.84281 1 14660 14660 13.906 13.906 1 2379800 + 48671 18373 32414 32435 47777 47777 -0.041806778411455525 VEVTEQSNQF 10 Unmodified _VEVTEQSNQF_ 0 0 0 REV__ENSG00000173769|ENST00000309765|TOPAZ1 REV__ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 590.777667 1179.54078 0.46001 0.00027176 -0.15338 -9.0614E-05 0.30663 0.00018115 591.2789438057149 76.742 0.83253 73.327 72.83 73.662 -3.4151 -0.036643 -0.00039308 NaN 13.906 36 23 2 NaN NaN NaN NaN 0 NaN NaN 0 2556400 + 48672 18373 32414 32435 -0.041806778411455525 VEVVTSWNL 9 Unmodified _VEVVTSWNL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6795654296875 2 523.779482 1045.54441 -0.23161 -0.00012131 1.042 0.00054577 0.81037 0.00042445 523.7798698918743 71.723 0.38436 68.096 67.883 68.267 -3.6275 18 10 2 0 0 0 0.27865 1 13533 13533 41.84 1.8823 1 942120 48673 2123 32415 32436 47778 47778 0.023460367233838042 VEVVTSWNL 9 Unmodified _VEVVTSWNL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.779482 1045.54441 0.40836 0.00021389 0.0066699 3.4935E-06 0.41503 0.00021738 523.7792795954149 71.623 0.59765 68.084 67.766 68.364 -3.5385 0.0028949 -0.00067984 NaN 41.84 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1022600 48674 2123 32415 32436 0.023460367233838042 VEVYDYQCM 9 Unmodified _VEVYDYQCM_ 0 0 0 REV__ENST00000534803.1_1_11:35474916-35547133:-|nuORF REV__ENST00000534803.1_1_11:35474916-35547133:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 575.2322387695312 2 575.233193 1148.45183 NaN NaN NaN NaN NaN NaN NaN 167.2 1 162.25 161.75 162.75 -4.948 0 0 0 0.23508 1 32865 32865 4.3292 0 1 + 48675 16997 32416 32437 47779 47779 -0.11645552396680614 VEWEGTTPY 9 Unmodified _VEWEGTTPY_ 0 0 0 ENSG00000119403|ENST00000373896|PHF19 ENSG00000119403|ENST00000373896|PHF19 ENSG00000119403|ENST00000373896|PHF19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2830810546875 2 541.245472 1080.47639 0.50043 0.00027085 -0.16346 -8.847E-05 0.33697 0.00018238 541.2452660547516 98.94 0.76079 98.94 98.506 99.267 0 36 21 2 0 0 0 0.071377 3 19386 19386;19433;19448 64.236 29.835 1 6435100 48676 3076 32417 32438 47780;47781;47782 47780 -0.06062832927273121 VEWEGTTPY 9 Unmodified _VEWEGTTPY_ 0 0 0 ENSG00000119403|ENST00000373896|PHF19 ENSG00000119403|ENST00000373896|PHF19 ENSG00000119403|ENST00000373896|PHF19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2635498046875 2 541.245472 1080.47639 0.071229 3.8552E-05 0.34076 0.00018443 0.41199 0.00022299 541.2455595238331 103.78 0.81555 99.559 99.181 99.997 -4.2183 58 23 3 0 0 0 0.044114 2 20381 20381;20424 71.134 31.448 1 9905400 48677 3076 32417 32438 47783;47784 47783 -0.06062832927273121 VEWEGTTPY 9 Unmodified _VEWEGTTPY_ 0 0 0 ENSG00000119403|ENST00000373896|PHF19 ENSG00000119403|ENST00000373896|PHF19 ENSG00000119403|ENST00000373896|PHF19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.26318359375 2 541.245472 1080.47639 0.27018 0.00014623 0.094957 5.1395E-05 0.36514 0.00019763 541.2453849462379 103.86 0.72655 99.511 99.142 99.869 -4.346 53 20 3 0 0 0 0.049627 2 19891 19844;19891 71.134 36.732 1 9049700 48678 3076 32417 32438 47785;47786 47786 -0.06062832927273121 VEWEGTTPY 9 Unmodified _VEWEGTTPY_ 0 0 0 ENSG00000119403|ENST00000373896|PHF19 ENSG00000119403|ENST00000373896|PHF19 ENSG00000119403|ENST00000373896|PHF19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.264404296875 2 541.245472 1080.47639 0.71283 0.00038581 -0.35256 -0.00019082 0.36027 0.00019499 541.2451488565565 103.47 0.80773 99.414 99.031 99.839 -4.0543 56 22 3 0 0 0 0.044114 5 19901 19859;19877;19901;19904;19940 71.134 40.192 1 7593000 48679 3076 32417 32438 47787;47788;47789;47790;47791 47789 -0.06062832927273121 VEWESQRL 8 Unmodified _VEWESQRL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6791381835938 2 523.766906 1045.51926 -0.23769 -0.0001245 0.75568 0.0003958 0.51799 0.00027131 523.7672434388796 86.676 0.35403 82.949 82.655 83.009 -3.727 16 9 2 0 0 0 0.17924 1 16937 16937 47.749 17.112 1 2019800 48680 4411 32418 32439 47792 47792 -0.0016801807919364364 VEWESQRL 8 Unmodified _VEWESQRL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.683349609375 2 523.766906 1045.51926 -0.26911 -0.00014095 0.86738 0.0004543 0.59826 0.00031335 523.767523746142 86.802 0.44874 82.852 82.546 82.995 -3.9503 16 12 2 0 0 0 0.17924 1 16511 16511 47.749 15.443 1 1638700 48681 4411 32418 32439 47793 47793 -0.0016801807919364364 VEWLACYY 8 Unmodified _VEWLACYY_ 0 0 0 REV__nc|ENSG00000211695|Q99603|TRGV9 REV__nc|ENSG00000211695|Q99603|TRGV9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6931762695312 2 523.736228 1045.4579 NaN NaN NaN NaN NaN NaN NaN 123.39 1 123.39 122.89 123.89 0 0 0 0 0.21486 1 24321 24321 9.3474 1.4373 1 + 48682 24250 32419 32440 47794 47794 -0.06300666102856667 VEWYPLMIKL 10 Unmodified _VEWYPLMIKL_ 0 0 0 REV__ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant REV__ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.0688781738281 3 431.242149 1290.70462 0.19557 8.4338E-05 1.6409 0.00070764 1.8365 0.00079198 431.57737084912577 25.984 0.34776 25.984 25.808 26.156 0 14 9 2 0 0 0 0.91149 1 4542 4542 1.7423 0 1 1400100 + 48683 15981 32420 32441 47795 47795 0.07089248396050607 VEWYPLMIKL 10 Unmodified _VEWYPLMIKL_ 0 0 0 REV__ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant REV__ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 431.242149 1290.70462 0.70459 0.00030385 1.6364 0.00070567 2.3409 0.0010095 431.24277274920274 27.953 0.42256 25.997 25.803 26.226 -1.9561 -0.025868 -0.00050329 NaN 1.7423 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1451700 + 48684 15981 32420 32441 0.07089248396050607 VEWYPLMIKL 10 Unmodified _VEWYPLMIKL_ 0 0 0 REV__ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant REV__ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 431.242149 1290.70462 0.2017 8.6983E-05 2.3991 0.0010346 2.6008 0.0011216 431.2430838470407 27.835 0.38298 26.08 25.864 26.247 -1.7552 0.056725 0.00048346 NaN 1.7423 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1296500 + 48685 15981 32420 32441 0.07089248396050607 VEYDFGLL 8 Unmodified _VEYDFGLL_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74420166015625 2 478.242201 954.469849 -0.12208 -5.8385E-05 1.2729 0.00060876 1.1508 0.00055037 478.242600679987 34.296 0.28052 31.978 31.803 32.083 -2.3175 9 7 2 0 0 0 0.70613 1 6299 6299 13.508 0 1 461430 + 48686 15567 32421 32442 47796 47796 -0.009207260879861678 VEYDFGLL 8 Unmodified _VEYDFGLL_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7222595214844 2 478.242201 954.469849 -0.12208 -5.8385E-05 1.2729 0.00060876 1.1508 0.00055037 478.242600679987 34.296 0.28052 31.978 31.803 32.083 -2.3175 9 7 2 0 0 0 0.96284 1 6293 6293 13.508 0 1 461430 + 48687 15567 32421 32442 47797 47797 -0.009207260879861678 VEYHIIKY 8 Unmodified _VEYHIIKY_ 0 0 0 REV__ENST00000531909.5_1_11:124967059-124967155:-|nuORF REV__ENST00000531909.5_1_11:124967059-124967155:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2711791992188 2 532.792392 1063.57023 NaN NaN NaN NaN NaN NaN NaN 23.492 1 22.038 21.538 22.538 -1.4535 0 0 0 0.21486 1 3792 3792 8.5933 0 1 + 48688 22775 32422 32443 47798 47798 0.04098930965665204 VEYIKRIENP 10 Unmodified _VEYIKRIENP_ 0 0 0 tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1 tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1 tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.752197265625 2 630.85097 1259.68739 NaN NaN NaN NaN NaN NaN NaN 85.486 1 81.577 81.077 82.077 -3.9093 0 0 0 0.22588 1 16259 16259 6.2058 0 1 48689 26293 32423 32444 47799 47799 0.06793044114624536 VEYKIALKL 9 Unmodified _VEYKIALKL_ 0 0 0 REV__TRPC6|p.G794Vfs*8|1|0.27|ENSG00000137672|chr11:101471213-101471213|T/-|frameshift_variant REV__TRPC6|p.G794Vfs*8|1|0.27|ENSG00000137672|chr11:101471213-101471213|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017822265625 3 359.561987 1075.66413 -0.24448 -8.7904E-05 0.24891 8.9497E-05 0.00443 1.5928E-06 359.5620531583742 137.27 0.67172 132.63 132.31 132.98 -4.6413 53 18 4 0 0 0 0.35429 1 27109 27109 28.495 0 1 11101000 + 48690 16402 32424 32445 47800 47800 0.1293265006790989 VEYKQRME 8 Unmodified _VEYKQRME_ 0 0 0 REV__ENSG00000171431|ENST00000167588|KRT20 REV__ENSG00000171431|ENST00000167588|KRT20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2799682617188 2 541.768591 1081.52263 0.34843 0.00018877 2.9166 0.0015801 3.265 0.0017689 541.770694494481 110.71 0.21413 110.71 110.64 110.86 0 7 5 2 0 0 0 0.72428 1 21791 21791 10.824 0 1 1615300 + + 48691 13528 32425 32446 47801 47801 -0.014870912968262928 VEYKQRME 8 Unmodified _VEYKQRME_ 0 0 0 REV__ENSG00000171431|ENST00000167588|KRT20 REV__ENSG00000171431|ENST00000167588|KRT20 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.768591 1081.52263 0.34843 0.00018877 2.9166 0.0015801 3.265 0.0017689 541.770694494481 110.71 0.21413 110.71 110.64 110.86 0 0.053394 0.00052188 NaN 10.824 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1615300 + + 48692 13528 32425 32446 -0.014870912968262928 VEYLIVPFD 9 Unmodified _VEYLIVPFD_ 0 0 0 REV__ENST00000454201.5_1_3:50363554-50364527:-|nuORF REV__ENST00000454201.5_1_3:50363554-50364527:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7916259765625 2 547.792058 1093.56956 NaN NaN NaN NaN NaN NaN NaN 169.84 1 169.84 169.34 170.34 0 0 0 0 0.23508 1 34879 34879 11.64 1.5664 1 + 48693 15372 32426 32447 47802 47802 0.02652091525965261 VFAYNGYK 8 Unmodified _VFAYNGYK_ 0 0 0 REV__nc|ENSG00000152208|O43424-2|GRID2 REV__nc|ENSG00000152208|O43424-2|GRID2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24249267578125 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 129.71 1 124.97 124.47 125.47 -4.7408 0 0 0 0.23749 1 24958 24958 0.12286 0 1 + 48694 17099 32427 32448 47803 47803 -0.011298866482889025 VFCDFIVS 8 Unmodified _VFCDFIVS_ 0 0 0 REV__ENST00000433165.6_1_6:154727490-154754936:-|nuORF REV__ENST00000433165.6_1_6:154727490-154754936:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24786376953125 2 465.225497 928.43644 NaN NaN NaN NaN NaN NaN NaN 112.95 1 112.95 112.45 113.45 0 0 0 0 0.23366 1 22211 22211 0.0082765 0 1 + 48695 21641 32428 32449 47804 47804 -0.0306405113154824 VFCLRQKKAI 10 Unmodified _VFCLRQKKAI_ 0 0 0 ENST00000562619.1_1_15:42986519-43010984:+|nuORF ENST00000562619.1_1_15:42986519-43010984:+|nuORF ENST00000562619.1_1_15:42986519-43010984:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 603.3648071289062 2 603.362993 1204.71143 NaN NaN NaN NaN NaN NaN NaN 175.12 1 170.22 169.72 170.72 -4.8916 0 0 0 2.8426 1 34900 34900 3.8763 0.80407 1 48696 11319 32429 32450 47805 47805 0.11726606067304601 VFCRFYYFRRL 11 Unmodified _VFCRFYYFRRL_ 0 0 0 ACTR3B-JMJD1C|1|fusion;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C ACTR3B-JMJD1C|1|fusion ACTR3B-JMJD1C|1|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4114990234375 2 785.411006 1568.80746 NaN NaN NaN NaN NaN NaN NaN 102.58 1 102.58 102.08 103.08 0 0 0 0 0.23698 1 20149 20149 0.35063 0 1 48697 44 32430 32451 47806 47806 0.04580753907362123 VFCRFYYFRRL 11 Unmodified _VFCRFYYFRRL_ 0 0 0 ACTR3B-JMJD1C|1|fusion;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C ACTR3B-JMJD1C|1|fusion ACTR3B-JMJD1C|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3893432617188 2 785.411006 1568.80746 NaN NaN NaN NaN NaN NaN NaN 110.33 1 105.84 105.34 106.34 -4.4915 0 0 0 0.2367 1 21176 21176 2.9952 0 1 48698 44 32430 32451 47807 47807 0.04580753907362123 VFCSCDSL 8 Unmodified _VFCSCDSL_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|168|1|anti-sense;chr15:53523322-53540662|232|17.27|0.17|6.68|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|1 L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|168|1|anti-sense L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|168|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2284851074219 2 437.177689 872.340825 NaN NaN NaN NaN NaN NaN NaN 64.676 1 61.218 60.718 61.718 -3.4581 0 0 0 0.2343 1 12092 12092 0.62683 0.50396 1 48699 539 32431 32452 47808 47808 -0.10045147314099268 VFCSDFNQGS 10 Unmodified _VFCSDFNQGS_ 0 0 0 nc|ENSG00000120519|Q0GE19-7|SLC10A7 nc|ENSG00000120519|Q0GE19-7|SLC10A7 nc|ENSG00000120519|Q0GE19-7|SLC10A7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 552.2452392578125 2 552.226756 1102.43896 NaN NaN NaN NaN NaN NaN NaN 167.51 1 162.62 162.12 163.12 -4.8916 0 0 0 0.22583 1 32954 32954 13.906 2.2658 1 48700 12297 32432 32453 47809 47809 -0.10816247464549633 VFCSLPAH 8 Unmodified _VFCSLPAH_ 0 0 0 ENST00000296666.12_1_5:126889918-126890026:+|nuORF ENST00000296666.12_1_5:126889918-126890026:+|nuORF ENST00000296666.12_1_5:126889918-126890026:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2168884277344 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 102 1 97.684 97.184 98.184 -4.3208 0 0 0 0.21323 1 19527 19527 14.582 3.4672 1 48701 8512 32433 32454 47810 47810 -0.01985498208887293 VFDALEEE 8 Unmodified _VFDALEEE_ 0 0 0 REV__TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant REV__TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 476.22076416015625 2 476.218923 950.423293 NaN NaN NaN NaN NaN NaN NaN 172.26 1 167.47 166.97 167.97 -4.7898 0 0 0 0.23366 1 35083 35083 0.12286 0 1 + 48702 14867 32434 32455 47811 47811 -0.05390210709947496 VFDSFYLA 8 Unmodified _VFDSFYLA_ 0 0 0 REV__nc|ENSG00000104368|P00750-2|PLAT REV__nc|ENSG00000104368|P00750-2|PLAT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2362976074219 2 481.236919 960.459284 0.3023 0.00014548 -0.10707 -5.1525E-05 0.19523 9.3951E-05 481.23696498050055 104.47 0.68994 104.47 104.17 104.86 0 30 19 2 0 0 0 8448 1 20479 20479 6.2058 0 1 2758000 + 48703 23984 32435 32456 47812 47812 -0.02252708742435061 VFEIAQPL 8 Unmodified _VFEIAQPL_ 0 0 0 REV__ENSG00000007171|ENST00000313735|NOS2 REV__ENSG00000007171|ENST00000313735|NOS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23828125 2 458.760561 915.506569 -0.12372 -5.6756E-05 -0.11635 -5.3377E-05 -0.24007 -0.00011013 458.7607960216264 107.91 0.62692 103.5 103.16 103.79 -4.4121 25 17 2 0 0 0 0.89552 1 20712 20712 19.439 8.6151 1 657250 + 48704 13883 32436 32457 47813 47813 0.04543570528562668 VFEIAQPL 8 Unmodified _VFEIAQPL_ 0 0 0 REV__ENSG00000007171|ENST00000313735|NOS2 REV__ENSG00000007171|ENST00000313735|NOS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23907470703125 2 458.760561 915.506569 0.69068 0.00031686 -0.50912 -0.00023357 0.18155 8.329E-05 458.76033394079707 107.59 0.49092 103.46 103.32 103.81 -4.135 21 13 2 0 0 0 0.67678 1 20696 20696 19.439 2.4967 1 716160 + 48705 13883 32436 32457 47814 47814 0.04543570528562668 VFEITILEM 9 Unmodified _VFEITILEM_ 0 0 0 REV__PIK3CG|p.P39T|1|0.46|ENSG00000105851|chr7:106867676-106867676|C/A|missense_variant REV__PIK3CG|p.P39T|1|0.46|ENSG00000105851|chr7:106867676-106867676|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.78076171875 2 547.793743 1093.57293 NaN NaN NaN NaN NaN NaN NaN 118.82 1 118.82 118.32 119.32 0 0 0 0 0.23508 1 23405 23405 11.64 0.81637 1 + 48706 24470 32437 32458 47815 47815 0.02989018308312552 VFELILKVRS 10 Unmodified _VFELILKVRS_ 0 0 0 REV__COPS6|p.Y241F|1|0.33|ENSG00000168090|chr7:100091310-100091310|A/T|missense_variant REV__COPS6|p.Y241F|1|0.33|ENSG00000168090|chr7:100091310-100091310|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2838745117188 2 602.376623 1202.73869 NaN NaN NaN NaN NaN NaN NaN 137.24 1 132.32 131.82 132.82 -4.9216 0 0 0 2.8426 1 26382 26382 0.043787 0 1 + 48707 13564 32438 32459 47816 47816 0.1454341287931129 VFERKVWESDF 11 Unmodified _VFERKVWESDF_ 0 0 0 REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24169921875 3 481.241865 1440.70376 NaN NaN NaN NaN NaN NaN NaN 138.64 1 133.79 133.29 134.29 -4.8492 0 0 0 0.22632 1 26721 26721 0.50596 0 1 + 48708 16458 32439 32460 47817 47817 0.0010412528069991822 VFERKVWESDF 11 Unmodified _VFERKVWESDF_ 0 0 0 REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24310302734375 3 481.241865 1440.70376 NaN NaN NaN NaN NaN NaN NaN 176.22 1 171.32 170.82 171.82 -4.9008 0 0 0 0.22632 1 35132 35132 0.50596 0 1 + 48709 16458 32439 32460 47818 47818 0.0010412528069991822 VFFLILLIL 9 Unmodified _VFFLILLIL_ 0 0 0 REV__ENSG00000011105|ENST00000011898|TSPAN9 REV__ENSG00000011105|ENST00000011898|TSPAN9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 545.94775390625 2 545.867372 1089.72019 NaN NaN NaN NaN NaN NaN NaN 9.6288 1 9.6288 9.1288 10.129 0 0 0 0 0.23508 1 1135 1135 0 0 1 + 48710 13927 32440 32461 47819 47819 0.17891902975452467 VFFPKSGF 8 Unmodified _VFFPKSGF_ 0 0 0 ENST00000244043.4_1_20:48124084-48124444:-|nuORF ENST00000244043.4_1_20:48124084-48124444:-|nuORF ENST00000244043.4_1_20:48124084-48124444:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16998291015625 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 135.64 1 135.64 135.14 136.14 0 0 0 0 0.21486 1 26869 26869 0.40072 0 1 48711 8198 32441 32462 47820 47820 0.01879605219721725 VFFPKSGF 8 Unmodified _VFFPKSGF_ 0 0 0 ENST00000244043.4_1_20:48124084-48124444:-|nuORF ENST00000244043.4_1_20:48124084-48124444:-|nuORF ENST00000244043.4_1_20:48124084-48124444:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 174.5 1 174.5 174 175 0 0 0 0 0.21486 1 36125 36125 0.40072 0 1 48712 8198 32441 32462 47821 47821 0.01879605219721725 VFFPLCGKAV 10 Unmodified _VFFPLCGKAV_ 0 0 0 TPMT|p.F100Lfs*49|1|0.16|ENSG00000137364|chr6:18143662-18143662|A/-|frameshift_variant;ENSG00000137364|ENST00000309983|TPMT TPMT|p.F100Lfs*49|1|0.16|ENSG00000137364|chr6:18143662-18143662|A/-|frameshift_variant TPMT|p.F100Lfs*49|1|0.16|ENSG00000137364|chr6:18143662-18143662|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2582397460938 2 540.799163 1079.58377 0.40339 0.00021815 -0.60305 -0.00032613 -0.19967 -0.00010798 540.7986883262699 67.285 0.48412 63.958 63.791 64.275 -3.3268 24 13 2 0 0 0 0.85325 1 12685 12685 16.942 5.302 1 887980 48713 4080 32442 32463 47822 47822 0.047164654732569034 VFFRLLLS 8 Unmodified _VFFRLLLS_ 0 0 0 ENST00000486860.5_1_7:87838471-87849341:-|nuORF ENST00000486860.5_1_7:87838471-87849341:-|nuORF ENST00000486860.5_1_7:87838471-87849341:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.2068176269531 3 332.207656 993.601138 NaN NaN NaN NaN NaN NaN NaN 118.72 1 118.72 118.22 119.22 0 0 0 0 0.21486 1 23384 23384 1.4819 0.41044 1 48714 10461 32443 32464 47823 47823 0.10408129070572159 VFFRLLLS 8 Unmodified _VFFRLLLS_ 0 0 0 ENST00000486860.5_1_7:87838471-87849341:-|nuORF ENST00000486860.5_1_7:87838471-87849341:-|nuORF ENST00000486860.5_1_7:87838471-87849341:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.2071228027344 3 332.207656 993.601138 NaN NaN NaN NaN NaN NaN NaN 120.06 1 115.54 115.04 116.04 -4.5221 0 0 0 0.21486 1 23672 23672 3.5965 1.5105 1 48715 10461 32443 32464 47824 47824 0.10408129070572159 VFFRLLLS 8 Unmodified _VFFRLLLS_ 0 0 0 ENST00000486860.5_1_7:87838471-87849341:-|nuORF ENST00000486860.5_1_7:87838471-87849341:-|nuORF ENST00000486860.5_1_7:87838471-87849341:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.20684814453125 3 332.207656 993.601138 NaN NaN NaN NaN NaN NaN NaN 121.33 1 116.64 116.14 117.14 -4.6873 0 0 0 0.21486 1 23292 23292 1.6526 0.45928 1 48716 10461 32443 32464 47825 47825 0.10408129070572159 VFFSSVLY 8 Unmodified _VFFSSVLY_ 0 0 0 FTSJ1|p.C179Y|1|0.47|ENSG00000068438|chrX:48481493-48481493|G/A|missense_variant FTSJ1|p.C179Y|1|0.47|ENSG00000068438|chrX:48481493-48481493|G/A|missense_variant FTSJ1|p.C179Y|1|0.47|ENSG00000068438|chrX:48481493-48481493|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2546691894531 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 78.11 1 78.11 77.61 78.61 0 0 0 0 0.21486 1 15198 15198 10.183 0 1 48717 11827 32444 32465 47826 47826 0.013841681542885453 VFFSSVLY 8 Unmodified _VFFSSVLY_ 0 0 0 FTSJ1|p.C179Y|1|0.47|ENSG00000068438|chrX:48481493-48481493|G/A|missense_variant FTSJ1|p.C179Y|1|0.47|ENSG00000068438|chrX:48481493-48481493|G/A|missense_variant FTSJ1|p.C179Y|1|0.47|ENSG00000068438|chrX:48481493-48481493|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2440490722656 2 481.255111 960.49567 -0.34237 -0.00016477 -0.99191 -0.00047736 -1.3343 -0.00064213 481.2547275783767 110.26 0.24647 105.88 105.72 105.96 -4.3776 9 6 2 0 0 0 8448 1 21718 21718 1.7423 0 1 1020000 48718 11827 32444 32465 47827 47827 0.013841681542885453 VFGRFITA 8 Unmodified _VFGRFITA_ 0 0 0 nc|ENSG00000077935|Q8NDV3-2|SMC1B;ENSG00000077935|ENST00000357450|SMC1B nc|ENSG00000077935|Q8NDV3-2|SMC1B nc|ENSG00000077935|Q8NDV3-2|SMC1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.16339111328125 3 304.176356 909.507237 NaN NaN NaN NaN NaN NaN NaN 67.874 1 64.547 64.047 65.047 -3.3268 0 0 0 0.21486 1 12805 12805 3.9444 0 1 48719 1564 32445 32466 47828 47828 0.048864099682646156 VFIAVALKM 9 Unmodified _VFIAVALKM_ 0 0 0 REV__tr|U7SKJ1|U7SKJ1_FUSNUDUF4418domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02008PE=4SV=1 REV__tr|U7SKJ1|U7SKJ1_FUSNUDUF4418domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02008PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 496.295654296875 2 496.304081 990.59361 -0.0019927 -9.8898E-07 0.48352 0.00023997 0.48153 0.00023899 496.3042420975837 131.6 0.99506 126.8 125.91 126.9 -4.799 34 27 2 0 0 0 0.5464 1 25329 25329 0.40827 0 1 1180200 + 48720 24931 32446 32467 47829 47829 0.09793653478641318 VFIGNQQFRA 10 Unmodified _VFIGNQQFRA_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.G2188Efs*28|1|0.79|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant;PKHD1L1|p.A1780T|1|0.25|ENSG00000205038|chr8:109445207-109445207|G/A|missense_variant ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2678833007812 2 590.317097 1178.61964 NaN NaN NaN NaN NaN NaN NaN 120.05 1 115.53 115.03 116.03 -4.5221 0 0 0 0.22588 1 23671 23671 6.7232 0 1 48721 7627 32447 32468 47830 47830 0.0374763897448247 VFIQTFRR 8 Unmodified _VFIQTFRR_ 0 0 0 ENST00000302805.7_1_X:154997641-154997719:+|nuORF ENST00000302805.7_1_X:154997641-154997719:+|nuORF ENST00000302805.7_1_X:154997641-154997719:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2809448242188 2 533.811451 1065.60835 0.4138 0.00022089 -1.434 -0.0007655 -1.0202 -0.00054461 533.8105654136291 25.164 0.38374 23.63 23.402 23.786 -1.5342 28 10 4 0 0 0 8448 1 4134 4134 3.2813 0.78282 1 2152800 48722 8579 32448 32469 47831 47831 0.07816861670971775 VFITPFITKN 10 Unmodified _VFITPFITKN_ 0 0 0 ENSG00000138600|ENST00000261854|SPPL2A;ENST00000559527.1_1_15:51018499-51023230:-|nuORF;ENST00000560489.2_1_15:49657539-49658184:-|nuORF ENSG00000138600|ENST00000261854|SPPL2A ENSG00000138600|ENST00000261854|SPPL2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2765502929688 2 590.342249 1178.66995 NaN NaN NaN NaN NaN NaN NaN 165.78 1 160.84 160.34 161.34 -4.9484 0 0 0 0.22552 1 32422 32422 18.146 2.2992 1 48723 4183 32449 32470 47832 47832 0.08775748579614628 VFKERWFWRVR 11 Unmodified _VFKERWFWRVR_ 0 0 0 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 536.9668579101562 3 536.968522 1607.88374 0.20461 0.00010987 -0.29135 -0.00015645 -0.086739 -4.6576E-05 536.9674734911318 176.59 1.0125 176.59 176.28 177.29 0 42 28 2 0 0 0 0.66313 1 36527 36527 0 0 1 1126700 48724 5124 32450 32471 47833 47833 0.10410893798984944 VFKERWFWRVR 11 Unmodified _VFKERWFWRVR_ 0 0 0 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 537.1558227539062 3 536.968522 1607.88374 0.24981 0.00013414 -0.76363 -0.00041004 -0.51382 -0.00027591 537.303382490504 150.82 0.20662 146.09 146 146.2 -4.7323 6 5 2 0 0 0 0.96228 1 29975 29975 0 0 1 1070900 48725 5124 32450 32471 47834 47834 0.10410893798984944 VFKFVFKE 8 Unmodified _VFKFVFKE_ 0 0 0 ENST00000560292.2_1_15:102277413-102284889:-|nuORF ENST00000560292.2_1_15:102277413-102284889:-|nuORF ENST00000560292.2_1_15:102277413-102284889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2613525390625 2 522.299853 1042.58515 NaN NaN NaN NaN NaN NaN NaN 150.68 1 145.56 145.06 146.06 -5.1204 0 0 0 0.21486 1 29204 29204 7.9102 2.1783 1 48726 11286 32451 32472 47835 47835 0.06556422833682518 VFKILLTQ 8 Unmodified _VFKILLTQ_ 0 0 0 ENST00000426431.2_1_12:53805763-53805964:+|nuORF ENST00000426431.2_1_12:53805763-53805964:+|nuORF ENST00000426431.2_1_12:53805763-53805964:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2521057128906 2 481.307678 960.600803 NaN NaN NaN NaN NaN NaN NaN 54.407 1 54.407 53.907 54.907 0 0 0 0 0.21486 1 10375 10375 2.3027 2.3027 1 48727 9726 32452 32473 47836 47836 0.1189270935069544 VFKIVKMI 8 Unmodified _VFKIVKMI_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.3011779785156 2 489.314449 976.614345 0.3003 0.00014694 -0.34375 -0.0001682 -0.043449 -2.126E-05 489.31423375557154 160.36 0.66899 155.56 155.26 155.93 -4.7952 34 18 3 0 0 0 8448 1 31874 31874 0.12286 0.12286 1 6815700 48728 1187 32453 32474 47837 47837 0.1251024385829851 VFKIVKMI 8 Unmodified _VFKIVKMI_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2657775878906 2 489.314449 976.614345 0.20053 9.8124E-05 -0.035217 -1.7232E-05 0.16532 8.0891E-05 489.314333326307 160.93 0.91026 155.68 155.28 156.19 -5.2526 58 25 3 0 0 0 8448 2 31187 31187;31207 0.12286 0 1 17004000 48729 1187 32453 32474 47838;47839 47838 0.1251024385829851 VFKKLSWIC 9 Unmodified _VFKKLSWIC_ 0 0 0 TMTC3|p.C759Mfs*3|1|0.29|ENSG00000139324|chr12:88195171-88195172|-/A|frameshift_variant;TMTC3|p.K758Nfs*31|1|0.16|ENSG00000139324|chr12:88195172-88195172|A/-|frameshift_variant;ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3 TMTC3|p.C759Mfs*3|1|0.29|ENSG00000139324|chr12:88195171-88195172|-/A|frameshift_variant TMTC3|p.C759Mfs*3|1|0.29|ENSG00000139324|chr12:88195171-88195172|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2158203125 3 375.215934 1122.62597 -0.039768 -1.4922E-05 -0.30364 -0.00011393 -0.3434 -0.00012885 375.2158068821219 39.077 0.48232 39.077 38.856 39.338 0 24 13 2 0 0 0 0.64764 1 7226 7226 0.073264 0.073264 1 1112400 48730 4239 32454 32475 47840 47840 0.06956440881640447 VFKKRFRI 8 Unmodified _VFKKRFRI_ 0 0 0 ENST00000493793.1_1_1:51887572-51887638:-|nuORF ENST00000493793.1_1_1:51887572-51887638:-|nuORF ENST00000493793.1_1_1:51887572-51887638:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7665405273438 2 547.353286 1092.69202 0.29607 0.00016206 2.8523 0.0015612 3.1484 0.0017233 547.3543151469294 149.42 0.20416 144.69 144.56 144.76 -4.7323 6 5 2 0 0 0 1.0191 1 29665 29665 4.756 1.1595 1 1521700 48731 10550 32455 32476 47841 47841 0.14938017838699125 VFKLPVAK 8 Unmodified _VFKLPVAK_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 301.2008361816406 3 301.200501 900.579674 NaN NaN NaN NaN NaN NaN NaN 102.73 1 98.705 98.205 99.205 -4.0212 0 0 0 0.21486 1 19746 19746 0.40072 0 1 + 48732 17221 32456 32477 47842 47842 0.12540744041848484 VFKPKFQFY 9 Unmodified _VFKPKFQFY_ 0 0 0 REV__tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 REV__tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2725219726562 2 602.331685 1202.64882 NaN NaN NaN NaN NaN NaN NaN 146.68 1 146.68 146.18 147.18 0 0 0 0 0.23508 1 29334 29334 7.9102 0 1 + 48733 25223 32457 32478 47843 47843 0.05559783270746266 VFKVRIVG 8 Unmodified _VFKVRIVG_ 0 0 0 REV__ENSG00000151148|ENST00000342494|UBE3B;REV__UBE3B|p.F731Lfs*71|1|0.07|ENSG00000151148|chr12:109521260-109521260|T/-|frameshift_variant REV__UBE3B|p.F731Lfs*71|1|0.07|ENSG00000151148|chr12:109521260-109521260|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.2511901855469 3 306.535884 916.585822 NaN NaN NaN NaN NaN NaN NaN 12.294 1 11.174 10.674 11.674 -1.1206 0 0 0 0.21486 1 1453 1453 0 0 1 + 48734 17053;25512 32458 32479 47844 47844 0.12419262273385812 VFLAPALANY 10 Unmodified _VFLAPALANY_ 0 0 0 ENSG00000169605|ENST00000377938|GKN1 ENSG00000169605|ENST00000377938|GKN1 ENSG00000169605|ENST00000377938|GKN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20184326171875 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 84.686 1 80.777 80.277 81.277 -3.9093 0 0 0 0.22588 1 16099 16099 2.086 0.89267 1 48735 5990 32459 32480 47845 47845 0.05019217482708882 VFLCCGKKSP 10 Unmodified _VFLCCGKKSP_ 0 0 0 ENST00000498313.5_1_11:2323379-2337620:+|nuORF;nc|ENSG00000064201|Q96QS1-3|TSPAN32;nc|ENSG00000064201|Q96QS1-5|TSPAN32;nc|ENSG00000064201|Q96QS1-2|TSPAN32;ENSG00000064201|ENST00000182290|TSPAN32;ENST00000483227.5_1_11:2323379-2336538:+|nuORF ENST00000498313.5_1_11:2323379-2337620:+|nuORF ENST00000498313.5_1_11:2323379-2337620:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27880859375 2 541.28028 1080.54601 NaN NaN NaN NaN NaN NaN NaN 43.427 1 43.427 42.927 43.927 0 0 0 0 2.8426 1 8134 8134 0.063865 0 1 48736 1331 32460 32481 47846 47846 0.008956312161444657 VFLPLLLGV 9 Unmodified _VFLPLLLGV_ 0 0 0 tr|U7SGK1|U7SGK1_FUSNUVanZ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02214PE=4SV=1 tr|U7SGK1|U7SGK1_FUSNUVanZ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02214PE=4SV=1 tr|U7SGK1|U7SGK1_FUSNUVanZ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02214PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.2168273925781 3 324.21604 969.62629 NaN NaN NaN NaN NaN NaN NaN 121.23 1 121.23 120.73 121.73 0 0 0 0 0.23508 1 23895 23895 0.26902 0 1 48737 25901 32461 32482 47847 47847 0.14026183873147602 VFLPLLLGV 9 Unmodified _VFLPLLLGV_ 0 0 0 tr|U7SGK1|U7SGK1_FUSNUVanZ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02214PE=4SV=1 tr|U7SGK1|U7SGK1_FUSNUVanZ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02214PE=4SV=1 tr|U7SGK1|U7SGK1_FUSNUVanZ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02214PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.2097473144531 3 324.21604 969.62629 NaN NaN NaN NaN NaN NaN NaN 124.42 1 119.84 119.34 120.34 -4.5757 0 0 0 0.23508 1 24534 24534 0.26902 0 1 48738 25901 32461 32482 47848 47848 0.14026183873147602 VFLRRLTQAR 10 Unmodified _VFLRRLTQAR_ 0 0 0 REV__nc|ENSG00000084693|Q8NDL9-3|AGBL5 REV__nc|ENSG00000084693|Q8NDL9-3|AGBL5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7633056640625 2 630.388388 1258.76222 NaN NaN NaN NaN NaN NaN NaN 68.097 1 68.097 67.597 68.597 0 0 0 0 2.8426 1 13166 13166 0.043787 0 1 + 48739 12978 32462 32483 47849 47849 0.14319271436511372 VFNEGSYDY 9 Unmodified _VFNEGSYDY_ 0 0 0 ENST00000265069.12_1_5:32403296-32403368:-|nuORF ENST00000265069.12_1_5:32403296-32403368:-|nuORF ENST00000265069.12_1_5:32403296-32403368:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7730102539062 2 547.227279 1092.44001 0.39784 0.00021771 0.73406 0.0004017 1.1319 0.00061941 547.2264641776482 124.75 0.17615 119.98 119.88 120.06 -4.7681 6 4 2 0 0 0 0.58066 1 23970 23970 0.073264 0 1 543590 48740 8346 32463 32484 47850 47850 -0.10251709824001409 VFNTKTPR 8 Unmodified _VFNTKTPR_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;RYR3|p.N4580Mfs*8|1|0.37|ENSG00000198838|chr15:33853618-33853618|A/-|frameshift_variant;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.E3943Rfs*18|1|0.12|ENSG00000198838|chr15:33837800-33837801|-/A|frameshift_variant nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77362060546875 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 110.44 1 110.44 109.94 110.94 0 0 0 0 0.21486 1 21721 21721 8.5933 0.68312 1 48741 7505 32464 32485 47851 47851 0.05220893508658264 VFPFRRVFWAF 11 Unmodified _VFPFRRVFWAF_ 0 0 0 ENST00000422090.2_1_19:50411267-50411354:-|nuORF ENST00000422090.2_1_19:50411267-50411354:-|nuORF ENST00000422090.2_1_19:50411267-50411354:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 491.27349853515625 3 491.27143 1470.79246 NaN NaN NaN NaN NaN NaN NaN 108.68 1 104.36 103.86 104.86 -4.32 0 0 0 0.22632 1 21415 21415 0.172 0.14579 1 48742 9676 32465 32486 47852 47852 0.07589630101711009 VFQNERIFREK 11 Unmodified _VFQNERIFREK_ 0 0 0 REV__EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant REV__EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 489.2112121582031 3 489.268525 1464.78375 NaN NaN NaN NaN NaN NaN NaN 151.68 1 146.92 146.42 147.42 -4.7523 0 0 0 0.22632 1 30139 30139 0.03141 0 1 + 48743 15467 32466 32487 47853 47853 0.06994611674554108 VFRKAGVP 8 Unmodified _VFRKAGVP_ 0 0 0 nc|ENSG00000133460|Q9BYW1|SLC2A11;ENSG00000133460|ENST00000316185|SLC2A11;nc|ENSG00000133460|Q9BYW1-4|SLC2A11;ENST00000489322.5_1_22:24224791-24226291:+|nuORF nc|ENSG00000133460|Q9BYW1|SLC2A11 nc|ENSG00000133460|Q9BYW1|SLC2A11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2201843261719 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 14.263 1 13.149 12.649 13.649 -1.1142 0 0 0 0.23782 1 2127 2127 0.063987 0.055711 1 48744 3805 32467 32488 47854 47854 0.0818611620518368 VFRKAGVP 8 Unmodified _VFRKAGVP_ 0 0 0 nc|ENSG00000133460|Q9BYW1|SLC2A11;ENSG00000133460|ENST00000316185|SLC2A11;nc|ENSG00000133460|Q9BYW1-4|SLC2A11;ENST00000489322.5_1_22:24224791-24226291:+|nuORF nc|ENSG00000133460|Q9BYW1|SLC2A11 nc|ENSG00000133460|Q9BYW1|SLC2A11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2318420410156 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 14.857 1 13.743 13.243 14.243 -1.1142 0 0 0 0.2396 1 2255 2255 0.12286 0 1 48745 3805 32467 32488 47855 47855 0.0818611620518368 VFRLDNFR 8 Unmodified _VFRLDNFR_ 0 0 0 REV__RUNX1|p.S145Afs*4|1|0.18|ENSG00000159216|chr21:34859573-34859573|T/-|frameshift_variant REV__RUNX1|p.S145Afs*4|1|0.18|ENSG00000159216|chr21:34859573-34859573|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2749633789062 2 533.793258 1065.57196 0.11851 6.3261E-05 -1.2509 -0.00066771 -1.1324 -0.00060444 533.7926255580076 147.68 0.6902 147.68 147.33 148.02 0 33 19 2 0 0 0 0.89687 1 29477 29477 3.2813 0 1 3556900 + 48746 13981 32468 32489 47856 47856 0.04179984774282275 VFRPLIIH 8 Unmodified _VFRPLIIH_ 0 0 0 ENST00000465942.1_1_13:46065604-46085992:+|nuORF;nc|ENSG00000136152|Q96JB2-2|COG3;ENSG00000136152|ENST00000349995|COG3 ENST00000465942.1_1_13:46065604-46085992:+|nuORF ENST00000465942.1_1_13:46065604-46085992:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.2123107910156 3 332.2114 993.612371 NaN NaN NaN NaN NaN NaN NaN 118.41 1 118.41 117.91 118.91 0 0 0 0 0.21486 1 23323 23323 0.45834 0 1 48747 3986 32469 32490 47857 47857 0.11530951164718317 VFSGGGGG 8 Unmodified _VFSGGGGG_ 0 0 0 ENSG00000112238|ENST00000369215|PRDM13 ENSG00000112238|ENST00000369215|PRDM13 ENSG00000112238|ENST00000369215|PRDM13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.15277099609375 2 319.150646 636.28674 NaN NaN NaN NaN NaN NaN NaN 103.57 1 99.219 98.719 99.719 -4.346 0 0 0 0.2396 1 19837 19837 0 0 1 48748 2676 32470 32491 47858 47858 -0.04595235359124672 VFTAGAVDDSI 11 Unmodified _VFTAGAVDDSI_ 0 0 0 REV__SLC24A2|p.M180V|1|0.21|ENSG00000155886|chr9:19786329-19786329|T/C|missense_variant REV__SLC24A2|p.M180V|1|0.21|ENSG00000155886|chr9:19786329-19786329|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7803344726562 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 115.42 1 110.87 110.37 111.37 -4.555 0 0 0 0.224 1 22161 22161 13.042 0.51092 1 + 48749 24630 32471 32492 47859 47859 -0.01386874864465426 VFTIFHFKL 9 Unmodified _VFTIFHFKL_ 0 0 0 ENST00000261574.9_1_13:98674841-98674961:+|nuORF ENST00000261574.9_1_13:98674841-98674961:+|nuORF ENST00000261574.9_1_13:98674841-98674961:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3213500976562 2 576.334227 1150.6539 NaN NaN NaN NaN NaN NaN NaN 139.82 1 134.97 134.47 135.47 -4.8492 0 0 0 0.19632 1 26959 26959 0.073264 0 1 48750 8300 32472 32493 47860 47860 0.08460087133380512 VFTNRTVLE 9 Unmodified _VFTNRTVLE_ 0 0 0 nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20172119140625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 106.97 1 102.55 102.05 103.05 -4.4121 0 0 0 0.23508 1 20520 20520 4.897 0 1 48751 3051 32473 32494 47861 47861 0.0461712798901317 VFTNRTVLE 9 Unmodified _VFTNRTVLE_ 0 0 0 nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015686035156 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 107.72 1 103.31 102.81 103.81 -4.4121 0 0 0 0.23508 1 20664 20664 4.897 0.70751 1 48752 3051 32473 32494 47862 47862 0.0461712798901317 VFTNRTVLE 9 Unmodified _VFTNRTVLE_ 0 0 0 nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 107.96 1 103.55 103.05 104.05 -4.4121 0 0 0 0.23508 1 20711 20711 7.1017 1.3183 1 48753 3051 32473 32494 47863 47863 0.0461712798901317 VFTNRTVLE 9 Unmodified _VFTNRTVLE_ 0 0 0 nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 101.02 1 97.033 96.533 97.533 -3.9895 0 0 0 0.23508 1 19416 19416 4.897 0 1 48754 3051 32473 32494 47864 47864 0.0461712798901317 VFTNRTVLE 9 Unmodified _VFTNRTVLE_ 0 0 0 nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT nc|ENSG00000118894|Q96G04-2|EEF2KMT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2130126953125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 106.19 1 102.1 101.6 102.6 -4.0913 0 0 0 0.23508 1 20418 20418 4.897 0 1 48755 3051 32473 32494 47865 47865 0.0461712798901317 VFTRKKELC 9 Unmodified _VFTRKKELC_ 0 0 0 REV__ENST00000584437.5_1_17:56494644-56494767:-|nuORF REV__ENST00000584437.5_1_17:56494644-56494767:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21429443359375 3 375.214593 1122.62195 -0.45763 -0.00017171 0.50067 0.00018786 0.043032 1.6146E-05 375.2147135533172 34.911 0.49059 32.518 32.249 32.74 -2.3938 34 13 3 0 0 0 0.46796 1 6388 6388 21.59 4.1475 1 3096500 + 48756 23233 32474 32495 47866 47866 0.06554351387921997 VFVALIIPG 9 Unmodified _VFVALIIPG_ 0 0 0 REV__tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1 REV__tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648864746094 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 71.146 1 71.146 70.646 71.646 0 0 0 0 0.19624 1 13780 13780 0.073264 0.064987 1 + 48757 25198 32475 32496 47867 47867 0.1126532432199383 VFVALIIPG 9 Unmodified _VFVALIIPG_ 0 0 0 REV__tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1 REV__tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651611328125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 149.57 1 149.57 149.07 150.07 0 0 0 0 0.1963 1 29947 29947 0 0 1 + 48758 25198 32475 32496 47868 47868 0.1126532432199383 VFVALIIPG 9 Unmodified _VFVALIIPG_ 0 0 0 REV__tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1 REV__tr|U7SW05|U7SW05_FUSNULipopolysaccharideexportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01409PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16473388671875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 154.97 1 149.71 149.21 150.21 -5.2526 0 0 0 0.1963 1 30049 30049 0 0 1 + 48759 25198 32475 32496 47869 47869 0.1126532432199383 VFVATWYRV 9 Unmodified _VFVATWYRV_ 0 0 0 SNED1|p.C661Afs*7|1|0.18|ENSG00000162804|chr2:241052361-241052361|C/-|frameshift_variant;nc|ENSG00000162804|Q8TER0-5|SNED1;SNED1|p.R1289Gfs*59|1|0.09|ENSG00000162804|chr2:241073313-241073313|C/-|frameshift_variant;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;ENSG00000162804|ENST00000310397|SNED1 SNED1|p.C661Afs*7|1|0.18|ENSG00000162804|chr2:241052361-241052361|C/-|frameshift_variant SNED1|p.C661Afs*7|1|0.18|ENSG00000162804|chr2:241052361-241052361|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21221923828125 3 380.878198 1139.61277 -0.55139 -0.00021001 -0.064737 -2.4657E-05 -0.61613 -0.00023467 380.8781431820991 87.078 0.8767 83.349 82.872 83.749 -3.7289 54 24 3 0 0 0 0.61324 2 16649 16649;16699 12.175 1.2758 1 5994300 48760 5371 32476 32497 47870;47871 47870 0.04854326093891359 VFVFVKKL 8 Unmodified _VFVFVKKL_ 0 0 0 ENST00000370654.5_1_1:84961112-84961604:+|nuORF ENST00000370654.5_1_1:84961112-84961604:+|nuORF ENST00000370654.5_1_1:84961112-84961604:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 327.23516845703125 3 327.216151 978.626624 NaN NaN NaN NaN NaN NaN NaN 158.75 1 158.75 158.25 159.25 0 0 0 0 0.21486 1 31874 31874 0 0 1 48761 9143 32477 32498 47872 47872 0.13645603592999578 VFVMFRVG 8 Unmodified _VFVMFRVG_ 0 0 0 ENST00000283410.4_1_18:33059207-33077880:-|nuORF ENST00000283410.4_1_18:33059207-33077880:-|nuORF ENST00000283410.4_1_18:33059207-33077880:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.8454284667969 3 318.845841 953.515694 NaN NaN NaN NaN NaN NaN NaN 9.3751 1 9.3751 8.8751 9.8751 0 0 0 0 0.21486 1 1077 1077 0 0 1 48762 8448 32478 32499 47873 47873 0.03707640613265539 VFVRKLRK 8 Unmodified _VFVRKLRK_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000466614.1_1_22:30983271-30987820:-|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 349.2376708984375 3 349.237949 1044.69202 NaN NaN NaN NaN NaN NaN NaN 15.101 1 13.891 13.391 14.391 -1.2106 0 0 0 0.2396 1 2056 2056 0 0 1 48763 1922 32479 32500 47874 47874 0.17146017838717853 VFVVFIHA 8 Unmodified _VFVVFIHA_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.18572998046875 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 138.01 1 133.37 132.87 133.87 -4.6413 0 0 0 0.21486 1 27242 27242 0.45834 0 1 48764 5525 32480 32501 47875 47875 0.06467884490712095 VFWFDDWFYPF 11 Unmodified _VFWFDDWFYPF_ 0 0 0 REV__SLC27A6|p.K104Rfs*8|1|0.38|ENSG00000113396|chr5:128966444-128966444|A/-|frameshift_variant REV__SLC27A6|p.K104Rfs*8|1|0.38|ENSG00000113396|chr5:128966444-128966444|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.686767578125 3 523.567689 1567.68124 NaN NaN NaN NaN NaN NaN NaN 165.02 1 160.07 159.57 160.57 -4.9484 0 0 0 0.22632 1 32217 32217 0.00056442 0 1 + 48765 15341 32481 32502 47876 47876 -0.07989474116925521 VFWFDDWFYPF 11 Unmodified _VFWFDDWFYPF_ 0 0 0 REV__SLC27A6|p.K104Rfs*8|1|0.38|ENSG00000113396|chr5:128966444-128966444|A/-|frameshift_variant REV__SLC27A6|p.K104Rfs*8|1|0.38|ENSG00000113396|chr5:128966444-128966444|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.686767578125 3 523.567689 1567.68124 NaN NaN NaN NaN NaN NaN NaN 165.03 1 160.08 159.58 160.58 -4.9484 0 0 0 0.23698 1 32221 32221 0.094841 0 1 + 48766 15341 32481 32502 47877 47877 -0.07989474116925521 VFWGKLESL 9 Unmodified _VFWGKLESL_ 0 0 0 SMYD2|p.G97Wfs*39|1|0.14|ENSG00000143499|chr1:214314807-214314808|-/T|frameshift_variant SMYD2|p.G97Wfs*39|1|0.14|ENSG00000143499|chr1:214314807-214314808|-/T|frameshift_variant SMYD2|p.G97Wfs*39|1|0.14|ENSG00000143499|chr1:214314807-214314808|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015075683594 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 103.77 1 103.77 103.27 104.27 0 0 0 0 0.23508 1 20394 20394 4.897 0.70751 1 48767 25702 32482 32503 47878 47878 0.05019217482708882 VFWPCPAV 8 Unmodified _VFWPCPAV_ 0 0 0 ENST00000593393.1_1_19:58918335-58918641:-|nuORF ENST00000593393.1_1_19:58918335-58918641:-|nuORF ENST00000593393.1_1_19:58918335-58918641:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.232666015625 2 459.730749 917.446945 0.23378 0.00010747 0.09214 4.236E-05 0.32592 0.00014983 459.73074411403906 96.987 0.63213 96.987 96.664 97.296 0 41 17 3 0 0 0 0.67903 1 18960 18960 17.087 0 1 4635300 48768 11644 32483 32504 47879 47879 -0.015080236864719154 VFYIILLV 8 Unmodified _VFYIILLV_ 0 0 0 REV__XKR3|p.N355Mfs*2|1|0.35|ENSG00000172967|chr22:16783935-16783935|T/-|frameshift_variant REV__XKR3|p.N355Mfs*2|1|0.35|ENSG00000172967|chr22:16783935-16783935|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2554931640625 2 490.314972 978.615391 NaN NaN NaN NaN NaN NaN NaN 155.35 1 155.35 154.85 155.85 0 0 0 0 0.21486 1 31144 31144 0.79363 0 1 + 48769 18319 32484 32505 47880 47880 0.12522781498864788 VGAAAAAA 8 Unmodified _VGAAAAAA_ 0 0 0 ENST00000398654.7_1_18:44497289-44497409:-|nuORF;ENST00000403627.7_1_17:71205816-71223389:-|nuORF;ENST00000305123.5_1_2:227663009-227664002:-|nuORF REV__ENSG00000099399|ENST00000378988|MAGEB2;REV__ENSG00000135414|ENST00000257868|GDF11;REV__ENSG00000176624|ENST00000406189|MEX3C;REV__ENSG00000198944|ENST00000378693|SOWAHA;REV__ENSG00000217236|ENST00000394967|SP9 REV__ENSG00000176624|ENST00000406189|MEX3C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2966918945312 1 601.330402 600.323125 0.39627 0.00023829 -1.7171 -0.0010325 -1.3208 -0.00079425 601.3315114024853 156.86 0.20312 156.86 156.79 157 0 6 5 2 0 0 0 0.83271 1 31473 31473 2.8892 0 1 2230200 48770 18515;14639;16267;19487;19701 32485 32506 47881 47881 0.006976415375561373 VGAAAMRV 8 Unmodified _VGAAAMRV_ 0 0 0 ENST00000380142.4_1_9:22008873-22008924:-|nuORF ENST00000380142.4_1_9:22008873-22008924:-|nuORF ENST00000380142.4_1_9:22008873-22008924:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7182922363281 2 387.718173 773.421793 NaN NaN NaN NaN NaN NaN NaN 103.38 1 99.035 98.535 99.535 -4.346 0 0 0 0.23366 1 19800 19800 0.12286 0 1 48771 9311 32486 32507 47882 47882 0.026019215109727156 VGAAAYGA 8 Unmodified _VGAAAYGA_ 0 0 0 ENSG00000112406|ENST00000367658|HECA;HECA|p.G335Dfs*27|3|0.42|ENSG00000112406|chr6:139167010-139167010|G/-|frameshift_variant ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.1751708984375 2 340.174121 678.33369 NaN NaN NaN NaN NaN NaN NaN 81.521 1 81.521 81.021 82.021 0 0 0 0 0.23711 1 15878 15878 0.12286 0 1 48772 2696 32487 32508 47883 47883 -0.018343758080050065 VGAAGASV 8 Unmodified _VGAAGASV_ 0 0 0 HCN4|p.G1124Vfs*57|1|0.26|ENSG00000138622|chr15:73322722-73322722|C/-|frameshift_variant HCN4|p.G1124Vfs*57|1|0.26|ENSG00000138622|chr15:73322722-73322722|C/-|frameshift_variant HCN4|p.G1124Vfs*57|1|0.26|ENSG00000138622|chr15:73322722-73322722|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.779296875 1 631.340966 630.33369 1.1449 0.00072281 3.0553 0.0019289 4.2002 0.0026518 631.3384968011313 163.42 0.17047 158.63 158.51 158.68 -4.7898 6 4 2 0 0 0 1.0244 1 32551 32551 2.8892 2.0956 1 3506000 48773 11873 32488 32509 47884 47884 0.003736241920023531 VGAAHLLLCL 10 Unmodified _VGAAHLLLCL_ 0 0 0 REV__ENSG00000174165|ENST00000310442|ZDHHC24 REV__ENSG00000174165|ENST00000310442|ZDHHC24 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.2342529296875 3 337.200284 1008.57902 NaN NaN NaN NaN NaN NaN NaN 95.004 1 90.813 90.313 91.313 -4.1911 0 0 0 0.22588 1 18130 18130 0.77653 0.31819 1 + 48774 18396 32489 32510 47885 47885 0.07507581330480662 VGAAHSGS 8 Unmodified _VGAAHSGS_ 0 0 0 REV__ENST00000325327.3_1_19:2430189-2430624:-|nuORF REV__ENST00000325327.3_1_19:2430189-2430624:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.19805908203125 2 343.166828 684.319102 NaN NaN NaN NaN NaN NaN NaN 19.424 1 19.424 18.924 19.924 0 0 0 0 0.23749 1 3174 3174 0.12286 0.12286 1 + 48775 20576 32490 32511 47886 47886 -0.03568447956138243 VGAALTST 8 Unmodified _VGAALTST_ 0 0 0 REV__HELQ|p.F782Lfs*9|1|0.13|ENSG00000163312|chr4:83429696-83429696|A/-|frameshift_variant REV__HELQ|p.F782Lfs*9|1|0.13|ENSG00000163312|chr4:83429696-83429696|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012939453125 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 179.89 1 175.02 174.52 175.52 -4.868 0 0 0 0.21486 1 35854 35854 2.8892 2.0956 1 + 48776 17558 32491 32512 47887 47887 0.015661625349594033 VGAANFREAM 10 Unmodified _VGAANFREAM_ 0 0 0 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2627563476562 2 533.260933 1064.50731 NaN NaN NaN NaN NaN NaN NaN 169.24 1 164.31 163.81 164.81 -4.9295 0 0 0 0.22588 1 33405 33405 7.9102 2.1497 1 48777 946 32492 32513 47888 47888 -0.02235958094047419 VGAARNAC 8 Unmodified _VGAARNAC_ 0 0 0 CACNA1H|p.F1444Lfs*51|1|0.41|ENSG00000196557|chr16:1211272-1211272|T/-|frameshift_variant;CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant;CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant;nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H CACNA1H|p.F1444Lfs*51|1|0.41|ENSG00000196557|chr16:1211272-1211272|T/-|frameshift_variant CACNA1H|p.F1444Lfs*51|1|0.41|ENSG00000196557|chr16:1211272-1211272|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2109680175781 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 141.77 1 137.12 136.62 137.62 -4.6493 0 0 0 0.23711 1 28011 28011 0.12286 0 1 48778 363 32493 32514 47889 47889 -0.02476126045564797 VGACHSDLQ 9 Unmodified _VGACHSDLQ_ 0 0 0 REV__CCDC180|p.S1054Lfs*19|1|0.44|ENSG00000197816|chr9:97354591-97354591|T/-|frameshift_variant REV__CCDC180|p.S1054Lfs*19|1|0.44|ENSG00000197816|chr9:97354591-97354591|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2396240234375 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 96.958 1 96.958 96.458 97.458 0 0 0 0 0.22251 1 18997 18997 16.942 5.302 1 + 48779 13293 32494 32515 47890 47890 -0.05980195427844137 VGADPGGL 8 Unmodified _VGADPGGL_ 0 0 0 REV__ENSG00000182327|ENST00000331264|GLTPD2 REV__ENSG00000182327|ENST00000331264|GLTPD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.152587890625 2 343.179404 684.344254 NaN NaN NaN NaN NaN NaN NaN 64.582 1 64.582 64.082 65.082 0 0 0 0 0.23711 1 12435 12435 0.12286 0 1 + 48780 18775 32495 32516 47891 47891 -0.010543931535607953 VGADQIRVG 9 Unmodified _VGADQIRVG_ 0 0 0 REV__nc|ENSG00000161955|O75888-5|TNFSF13 REV__nc|ENSG00000161955|O75888-5|TNFSF13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2387390136719 2 457.756341 913.498129 NaN NaN NaN NaN NaN NaN NaN 157.07 1 152.28 151.78 152.78 -4.7885 0 0 0 0.23508 1 31235 31235 9.3474 0.75416 1 + 48781 17475 32496 32517 47892 47892 0.03792016611964755 VGADVAMVVT 10 Unmodified _VGADVAMVVT_ 0 0 0 HOGA1|p.A132V|1|0.41|ENSG00000241935|chr10:97599143-97599143|C/T|missense_variant HOGA1|p.A132V|1|0.41|ENSG00000241935|chr10:97599143-97599143|C/T|missense_variant HOGA1|p.A132V|1|0.41|ENSG00000241935|chr10:97599143-97599143|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2491455078125 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 151.84 1 151.84 151.34 152.34 0 0 0 0 0.21574 1 30413 30413 25.399 4.9457 1 48782 11912 32497 32518 47893 47893 0.013190054429401243 VGAEACWRLQA 11 Unmodified _VGAEACWRLQA_ 0 0 0 ENST00000334801.7_1_11:118780919-118780973:-|nuORF ENST00000334801.7_1_11:118780919-118780973:-|nuORF ENST00000334801.7_1_11:118780919-118780973:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3016967773438 2 602.30059 1202.58663 NaN NaN NaN NaN NaN NaN NaN 103.75 1 103.75 103.25 104.25 0 0 0 0 0.23264 1 20387 20387 6.2058 1.8765 1 48783 8796 32498 32519 47894 47894 -0.006563111398918409 VGAEAEGAGL 10 Unmodified _VGAEAEGAGL_ 0 0 0 REV__ENST00000518169.1_1_8:57124347-57125478:+|nuORF REV__ENST00000518169.1_1_8:57124347-57125478:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21942138671875 2 437.219257 872.423961 0.12772 5.584E-05 -0.0054612 -2.3878E-06 0.12225 5.3452E-05 437.2192433086036 35.708 0.94761 33.432 33.037 33.984 -2.2766 57 26 3 0 0 0 0.351 1 6360 6360 34.102 3.4659 1 3242600 + 48784 22604 32499 32520 47895 47895 -0.01735371270228825 VGAEDARLM 9 Unmodified _VGAEDARLM_ 0 0 0 ENSG00000125124|ENST00000245157|BBS2 ENSG00000125124|ENST00000245157|BBS2 ENSG00000125124|ENST00000245157|BBS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2425537109375 2 481.242209 960.469866 NaN NaN NaN NaN NaN NaN NaN 108.24 1 108.24 107.74 108.74 0 0 0 0 0.23508 1 21284 21284 12.532 2.3482 1 48785 3343 32500 32521 47896 47896 -0.011950493596486922 VGAEEELISP 10 Unmodified _VGAEEELISP_ 0 0 0 REV__ENST00000391911.5_1_1:209824529-209824649:-|nuORF REV__ENST00000391911.5_1_1:209824529-209824649:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.269287109375 2 522.266404 1042.51826 NaN NaN NaN NaN NaN NaN NaN 15.727 1 15.727 15.227 16.227 0 0 0 0 2.8426 1 2413 2413 0.26539 0 1 + 48786 21205 32501 32522 47897 47897 -0.001302772387589357 VGAEEKWDP 9 Unmodified _VGAEEKWDP_ 0 0 0 nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000473624.1_1_22:46759891-46761251:-|nuORF nc|ENSG00000075275|Q9NYQ6|CELSR1 nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 515.2944946289062 2 515.745639 1029.47673 0.33174 0.00017109 -0.070444 -3.6331E-05 0.26129 0.00013476 515.7456185175895 68.969 0.62411 65.578 65.185 65.809 -3.3903 26 17 2 0 0 0 0.86532 1 12966 12966 2.0598 0 1 3270000 48787 1514 32502 32523 47898 47898 -0.036834132074318404 VGAEEPPLE 9 Unmodified _VGAEEPPLE_ 0 0 0 REV__VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant REV__VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1595458984375 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 160.04 1 154.81 154.31 155.31 -5.2299 0 0 0 0.23508 1 31067 31067 2.7352 0 1 + 48788 25537 32503 32524 47899 47899 -0.017222179559894357 VGAEEPPLE 9 Unmodified _VGAEEPPLE_ 0 0 0 REV__VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant REV__VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1596984863281 3 314.158919 939.454927 NaN NaN NaN NaN NaN NaN NaN 135.83 1 131 130.5 131.5 -4.8307 0 0 0 0.23508 1 26155 26155 2.7352 0 1 + 48789 25537 32503 32524 47900 47900 -0.017222179559894357 VGAEPGGG 8 Unmodified _VGAEPGGG_ 0 0 0 REV__ENSG00000165617|ENST00000395153|DACT1 REV__ENSG00000165617|ENST00000395153|DACT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.1565856933594 2 322.155929 642.297304 NaN NaN NaN NaN NaN NaN NaN 40.505 1 37.965 37.465 38.465 -2.5398 0 0 0 0.2396 1 7262 7262 0 0 1 + 48790 17785 32504 32525 47901 47901 -0.038152527046918294 VGAEPKYAK 9 Unmodified _VGAEPKYAK_ 0 0 0 REV__ENST00000518472.1_2_8:23189434-23191051:-|nuORF REV__ENST00000518472.1_2_8:23189434-23191051:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7671203613281 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 170.82 1 170.82 170.32 171.32 0 0 0 0 0.23508 1 35150 35150 7.9102 2.6795 1 + 48791 22606 32505 32526 47902 47902 0.040980714145121055 VGAFLCWIA 9 Unmodified _VGAFLCWIA_ 0 0 0 ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A ENSG00000075673|ENST00000381946|ATP12A ENSG00000075673|ENST00000381946|ATP12A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25860595703125 2 490.257131 978.499709 NaN NaN NaN NaN NaN NaN NaN 26.014 1 24.366 23.866 24.866 -1.6482 0 0 0 0.1966 1 4578 4578 0.029283 0.016017 1 48792 1524 32506 32527 47903 47903 0.009599343763284196 VGAFPTRIL 9 Unmodified _VGAFPTRIL_ 0 0 0 REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 325.1126708984375 3 325.19916 972.575651 0.2448 7.9608E-05 0.47368 0.00015404 0.71848 0.00023365 325.19950471044 32.935 0.2789 30.788 30.623 30.902 -2.1468 10 7 2 0 0 0 0.884 1 5703 5703 0.26902 0.1097 1 255640 + 48793 14095 32507 32528 47904 47904 0.08826654548136048 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21331787109375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 62.453 1 62.453 61.953 62.953 0 0 0 0 0.22834 1 11993 11993 0.12286 0 1 + 48794 14396 32508 32529 47905 47905 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2131652832031 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 96.741 1 92.643 92.143 93.143 -4.0978 0 0 0 0.23711 1 18975 18975 0.063987 0 1 + 48795 14396 32508 32529 47906 47906 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2140808105469 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 108.91 1 104.53 104.03 105.03 -4.3776 0 0 0 0.22676 1 21463 21463 0.62683 0 1 + 48796 14396 32508 32529 47907 47907 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2135009765625 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 120.62 1 116.1 115.6 116.6 -4.5221 0 0 0 0.23711 1 23781 23781 0.0082765 0 1 + 48797 14396 32508 32529 47908 47908 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2132873535156 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 121.25 1 116.7 116.2 117.2 -4.5476 0 0 0 0.21486 1 23900 23900 5.7604 0 1 + 48798 14396 32508 32529 47909 47909 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2141418457031 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 172.95 1 168.16 167.66 168.66 -4.7898 0 0 0 0.22834 1 35258 35258 0.12286 0 1 + 48799 14396 32508 32529 47910 47910 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2141418457031 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 172.97 1 168.18 167.68 168.68 -4.7898 0 0 0 0.21486 1 35262 35262 2.8892 0 1 + 48800 14396 32508 32529 47911 47911 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21343994140625 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 117.47 1 112.86 112.36 113.36 -4.6106 0 0 0 0.23366 1 22543 22543 0.12286 0 1 + 48801 14396 32508 32529 47912 47912 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21356201171875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 120.82 1 116.16 115.66 116.66 -4.6572 0 0 0 0.23749 1 23193 23193 0.12286 0 1 + 48802 14396 32508 32529 47913 47913 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21356201171875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 120.83 1 116.16 115.66 116.66 -4.6713 0 0 0 0.21486 1 23195 23195 9.3474 3.587 1 + 48803 14396 32508 32529 47914 47914 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21453857421875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 154.9 1 149.62 149.12 150.12 -5.2854 0 0 0 0.23711 1 30041 30041 0.0082765 0 1 + 48804 14396 32508 32529 47915 47915 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21258544921875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 24.002 1 22.194 21.694 22.694 -1.8073 0 0 0 0.23711 1 3887 3887 0.0082765 0 1 + 48805 14396 32508 32529 47916 47916 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21466064453125 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 90.631 1 86.853 86.353 87.353 -3.7779 0 0 0 0.23366 1 17344 17344 0.12286 0 1 + 48806 14396 32508 32529 47917 47917 0.027670567772474897 VGAFVGSL 8 Unmodified _VGAFVGSL_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2145080566406 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 173.43 1 168.55 168.05 169.05 -4.881 0 0 0 0.22834 1 34478 34478 0.12286 0 1 + 48807 14396 32508 32529 47918 47918 0.027670567772474897 VGAFVSIG 8 Unmodified _VGAFVSIG_ 0 0 0 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21282958984375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 60.2 1 60.2 59.7 60.7 0 0 0 0 0.23749 1 11538 11538 0.13829 0.015425 1 + 48808 25000 32509 32530 47919 47919 0.02767056777236121 VGAFVSIG 8 Unmodified _VGAFVSIG_ 0 0 0 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2127685546875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 89.336 1 89.336 88.836 89.836 0 0 0 0 0.23711 1 17446 17446 0.0082765 0 1 + 48809 25000 32509 32530 47920 47920 0.02767056777236121 VGAFVSIG 8 Unmodified _VGAFVSIG_ 0 0 0 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2187194824219 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 51.562 1 48.68 48.18 49.18 -2.8824 0 0 0 0.23749 1 9799 9799 0.12286 0 1 + 48810 25000 32509 32530 47921 47921 0.02767056777236121 VGAFVSIG 8 Unmodified _VGAFVSIG_ 0 0 0 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2125244140625 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 95.251 1 91.201 90.701 91.701 -4.0496 0 0 0 0.23366 1 18669 18669 0.12286 0 1 + 48811 25000 32509 32530 47922 47922 0.02767056777236121 VGAFVSIG 8 Unmodified _VGAFVSIG_ 0 0 0 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21258544921875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 66.325 1 62.829 62.329 63.329 -3.4965 0 0 0 0.23366 1 12428 12428 0.12286 0 1 + 48812 25000 32509 32530 47923 47923 0.02767056777236121 VGAFVSIG 8 Unmodified _VGAFVSIG_ 0 0 0 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 REV__tr|U7SPA3|U7SPA3_FUSNUATPsynthasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpDPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21319580078125 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 99.943 1 95.646 95.146 96.146 -4.297 0 0 0 0.23366 1 19108 19108 0.12286 0 1 + 48813 25000 32509 32530 47924 47924 0.02767056777236121 VGAGAAEALGP 11 Unmodified _VGAGAAEALGP_ 0 0 0 REV__ENST00000564834.1_1_7:152161469-152161961:+|nuORF REV__ENST00000564834.1_1_7:152161469-152161961:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2383728027344 2 456.742899 911.471246 0.25975 0.00011864 0.96157 0.00043919 1.2213 0.00055783 456.74282836706215 71.715 0.95819 68.088 67.594 68.552 -3.6275 76 26 4 0 0 0 0.57718 1 13456 13456 19.257 1.1106 1 18883000 + 48814 23099 32510 32531 47925 47925 0.011969080007588673 VGAGAGAG 8 Unmodified _VGAGAGAG_ 0 0 0 ENST00000315579.9_1_12:6602904-6603066:+|nuORF;ENST00000493442.1_1_X:103411396-103420351:+|nuORF;ENSG00000215474|ENST00000425639|SKOR2 ENST00000315579.9_1_12:6602904-6603066:+|nuORF ENST00000315579.9_1_12:6602904-6603066:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 561.310791015625 1 559.283451 558.276175 0.30424 0.00017016 1.5152 0.00084743 1.8195 0.0010176 559.2806180955373 162.17 0.20407 162.17 162 162.2 0 8 5 3 0 0 0 8448 1 32596 32596 0 0 1 6371800 48815 7749 32511 32532 47926 47926 -0.02063218013563528 VGAGAGGGG 9 Unmodified _VGAGAGGGG_ 0 0 0 REV__SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant REV__SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2890625 1 602.289265 601.281989 0.86631 0.00052177 4.0841 0.0024598 4.9505 0.0029816 602.2873787531627 119.14 0.17555 114.5 114.35 114.53 -4.645 6 4 2 0 0 0 0.78757 1 22853 22853 2.3027 0 1 1361100 + 48816 17465 32512 32533 47927 47927 -0.034601195018922226 VGAGCEASCRE 11 Unmodified _VGAGCEASCRE_ 0 0 0 REV__ENSG00000187720|ENST00000261862|THSD4 REV__ENSG00000187720|ENST00000261862|THSD4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.265625 2 541.223691 1080.43283 NaN NaN NaN NaN NaN NaN NaN 133.3 1 128.66 128.16 129.16 -4.6399 0 0 0 0.23634 1 26281 26281 3.2813 0 1 + 48817 19106 32513 32534 47928 47928 -0.10417088967733434 VGAGCPSL 8 Unmodified _VGAGCPSL_ 0 0 0 REV__ENST00000377027.1_1_9:74533369-74587755:+|nuORF REV__ENST00000377027.1_1_9:74533369-74587755:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.1754150390625 2 352.175807 702.337061 NaN NaN NaN NaN NaN NaN NaN 49.663 1 49.663 49.163 50.163 0 0 0 0 0.23749 1 9393 9393 0.13829 0 1 + 48818 21085 32514 32535 47929 47929 -0.02601449025655711 VGAGGGGR 8 Unmodified _VGAGGGGR_ 0 0 0 REV__ENST00000488973.6_1_19:3572986-3573972:+|nuORF REV__ENST00000488973.6_1_19:3572986-3573972:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7485961914062 1 630.331799 629.324522 0.41808 0.00026353 -1.79 -0.0011283 -1.3719 -0.00086477 630.332274024028 126.7 0.18071 122 121.9 122.08 -4.6998 5 4 2 0 0 0 1.0268 1 24359 24359 2.8892 0 1 1011100 + 48819 22281 32515 32536 47930 47930 -0.004967243736700766 VGAGHMGR 8 Unmodified _VGAGHMGR_ 0 0 0 REV__ENSG00000166111|ENST00000610966|SVOP REV__ENSG00000166111|ENST00000610966|SVOP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3988037109375 1 784.388268 783.380991 0.27473 0.00021549 3.8233 0.0029989 4.098 0.0032144 784.3887103920715 132.46 0.10553 127.6 127.53 127.63 -4.8527 4 2 2 0 0 0 0.83271 2 25446 25445;25446 2.8892 0 1 1820100 + 48820 17824 32516 32537 47931;47932 47932 -0.019364198086464057 VGAGIMVGLVQ 11 Unmodified _VGAGIMVGLVQ_ 0 0 0 REV__PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant REV__PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.258056640625 2 522.299527 1042.5845 -0.54531 -0.00028482 -0.055033 -2.8744E-05 -0.60035 -0.00031356 522.8003929427715 106.04 0.62914 101.78 101.55 102.18 -4.2638 34 17 3 0 0 0 0.68099 1 20911 20911 13.042 13.042 1 3076800 + 48821 14016 32517 32538 47933 47933 0.06491260122288622 VGAGPFSE 8 Unmodified _VGAGPFSE_ 0 0 0 nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 382.2127990722656 2 382.184686 762.354819 NaN NaN NaN NaN NaN NaN NaN 117.36 1 112.88 112.38 113.38 -4.486 0 0 0 0.21486 1 23136 23136 2.8892 0 1 48822 2133 32518 32539 47934 47934 -0.035864104991446766 VGAGQMKA 8 Unmodified _VGAGQMKA_ 0 0 0 REV__ENST00000377069.8_1_12:122017974-122018052:-|nuORF REV__ENST00000377069.8_1_12:122017974-122018052:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.53656005859375 2 381.202356 760.390159 NaN NaN NaN NaN NaN NaN NaN 96.978 1 92.88 92.38 93.38 -4.0978 0 0 0 0.23366 1 19024 19024 0.12286 0 1 + 48823 21087 32519 32540 47935 47935 0.0003792875701265075 VGAHAWQF 8 Unmodified _VGAHAWQF_ 0 0 0 REV__GUCY2F|p.E320Rfs*16|1|0.17|ENSG00000101890|chrX:109465216-109465217|-/T|frameshift_variant REV__GUCY2F|p.E320Rfs*16|1|0.17|ENSG00000101890|chrX:109465216-109465217|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2276611328125 2 458.22722 914.439886 NaN NaN NaN NaN NaN NaN NaN 165.37 1 160.42 159.92 160.92 -4.9484 0 0 0 0.23711 1 32308 32308 0.0082765 0 1 + 48824 14806 32520 32541 47936 47936 -0.02075620242669629 VGAHGHPG 8 Unmodified _VGAHGHPG_ 0 0 0 REV__ENST00000406855.7_1_22:24177086-24180623:-|nuORF REV__ENST00000406855.7_1_22:24177086-24180623:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.52490234375 2 366.182812 730.351071 NaN NaN NaN NaN NaN NaN NaN 23.004 1 21.451 20.951 21.951 -1.5532 0 0 0 0.23711 1 3953 3953 0.12286 0 1 + 48825 19501 32521 32542 47937 47937 -0.024890354823355665 VGAHNPSAP 9 Unmodified _VGAHNPSAP_ 0 0 0 REV__nc|ENSG00000141568|Q01167-2|FOXK2 REV__nc|ENSG00000141568|Q01167-2|FOXK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2501220703125 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 96.839 1 96.839 96.339 97.339 0 0 0 0 0.19652 1 18972 18972 0.029283 0 1 + 48826 16640 32522 32543 47938 47938 -0.01620514484955038 VGAHNPSAP 9 Unmodified _VGAHNPSAP_ 0 0 0 REV__nc|ENSG00000141568|Q01167-2|FOXK2 REV__nc|ENSG00000141568|Q01167-2|FOXK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2445373535156 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 22.035 1 20.561 20.061 21.061 -1.4742 0 0 0 0.23508 1 3750 3750 5.2307 0.47466 1 + 48827 16640 32522 32543 47939 47939 -0.01620514484955038 VGAHNPSAP 9 Unmodified _VGAHNPSAP_ 0 0 0 REV__nc|ENSG00000141568|Q01167-2|FOXK2 REV__nc|ENSG00000141568|Q01167-2|FOXK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.252197265625 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 66.449 1 63.402 62.902 63.902 -3.047 0 0 0 0.23508 1 12876 12876 4.756 0 1 + 48828 16640 32522 32543 47940 47940 -0.01620514484955038 VGAHNPSAP 9 Unmodified _VGAHNPSAP_ 0 0 0 REV__nc|ENSG00000141568|Q01167-2|FOXK2 REV__nc|ENSG00000141568|Q01167-2|FOXK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2452392578125 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 90.628 1 86.768 86.268 87.268 -3.8595 0 0 0 0.23508 1 17731 17731 4.756 0.42677 1 + 48829 16640 32522 32543 47941 47941 -0.01620514484955038 VGAHNPSAP 9 Unmodified _VGAHNPSAP_ 0 0 0 REV__nc|ENSG00000141568|Q01167-2|FOXK2 REV__nc|ENSG00000141568|Q01167-2|FOXK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2386779785156 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 14.655 1 13.482 12.982 13.982 -1.173 0 0 0 0.23508 1 1998 1998 2.3027 0.24298 1 + 48830 16640 32522 32543 47942 47942 -0.01620514484955038 VGAHNPSAP 9 Unmodified _VGAHNPSAP_ 0 0 0 REV__nc|ENSG00000141568|Q01167-2|FOXK2 REV__nc|ENSG00000141568|Q01167-2|FOXK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2456359863281 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 53.964 1 50.828 50.328 51.328 -3.1352 0 0 0 0.19634 1 9943 9943 0.0033805 0.0033805 1 + 48831 16640 32522 32543 47943 47943 -0.01620514484955038 VGAHNPSAP 9 Unmodified _VGAHNPSAP_ 0 0 0 REV__nc|ENSG00000141568|Q01167-2|FOXK2 REV__nc|ENSG00000141568|Q01167-2|FOXK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.23956298828125 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 115.07 1 110.51 110.01 111.01 -4.555 0 0 0 0.19634 1 22091 22091 0.0033805 0 1 + 48832 16640 32522 32543 47944 47944 -0.01620514484955038 VGAHNPSAP 9 Unmodified _VGAHNPSAP_ 0 0 0 REV__nc|ENSG00000141568|Q01167-2|FOXK2 REV__nc|ENSG00000141568|Q01167-2|FOXK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2413635253906 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 13.104 1 11.983 11.483 12.483 -1.1206 0 0 0 0.23508 1 1624 1624 2.3027 1.5091 1 + 48833 16640 32522 32543 47945 47945 -0.01620514484955038 VGAHNPSAP 9 Unmodified _VGAHNPSAP_ 0 0 0 REV__nc|ENSG00000141568|Q01167-2|FOXK2 REV__nc|ENSG00000141568|Q01167-2|FOXK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24273681640625 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 101.99 1 97.971 97.471 98.471 -4.0212 0 0 0 0.19634 1 19599 19599 0.0033805 0.0033805 1 + 48834 16640 32522 32543 47946 47946 -0.01620514484955038 VGAHRPGLL 9 Unmodified _VGAHRPGLL_ 0 0 0 ENSG00000160111|ENST00000443236|CPAMD8 ENSG00000160111|ENST00000443236|CPAMD8 ENSG00000160111|ENST00000443236|CPAMD8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2393493652344 2 460.277244 918.539935 NaN NaN NaN NaN NaN NaN NaN 179.28 1 174.41 173.91 174.91 -4.868 0 0 0 0.1966 1 35703 35703 0.073264 0 1 48835 5229 32523 32544 47947 47947 0.07740617091144486 VGAIAGAG 8 Unmodified _VGAIAGAG_ 0 0 0 ENSG00000161798|ENST00000293599|AQP5 ENSG00000161798|ENST00000293599|AQP5 ENSG00000161798|ENST00000293599|AQP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 615.1498413085938 1 615.346052 614.338775 0.62654 0.00038554 -1.947 -0.0011981 -1.3205 -0.00081256 615.3466019270583 163.25 0.10904 158.16 158.08 158.19 -5.0943 4 2 2 0 0 0 1.0244 1 31740 31740 6.3541 0 1 3725600 48836 5300 32524 32545 47948 47948 0.01617928054611184 VGAIYIRR 8 Unmodified _VGAIYIRR_ 0 0 0 NFS1|p.R275H|1|0.31|ENSG00000244005|chr20:35675169-35675169|C/T|missense_variant;ENST00000480655.5_1_20:34262894-34263203:-|nuORF;nc|ENSG00000244005|Q9Y697-2|NFS1;nc|ENSG00000244005|Q9Y697-3|NFS1;ENSG00000244005|ENST00000374092|NFS1 NFS1|p.R275H|1|0.31|ENSG00000244005|chr20:35675169-35675169|C/T|missense_variant NFS1|p.R275H|1|0.31|ENSG00000244005|chr20:35675169-35675169|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 474.29376220703125 2 474.292894 946.571235 NaN NaN NaN NaN NaN NaN NaN 103.48 1 99.427 98.927 99.927 -4.0543 0 0 0 0.23711 1 19898 19898 0.063987 0 1 48837 7876 32525 32546 47949 47949 0.09581190125220473 VGAKACMA 8 Unmodified _VGAKACMA_ 0 0 0 REV__nc|ENSG00000159140|P18583-6|SON REV__nc|ENSG00000159140|P18583-6|SON MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.22259521484375 2 375.685484 749.356416 NaN NaN NaN NaN NaN NaN NaN 49.995 1 47.113 46.613 47.613 -2.8811 0 0 0 0.21486 1 9478 9478 0.79363 0 1 + 48838 17359 32526 32547 47950 47950 -0.02828816006388024 VGAKAGRR 8 Unmodified _VGAKAGRR_ 0 0 0 REV__PRKG2|p.N474Kfs*2|1|0.43|ENSG00000138669|chr4:81140655-81140656|-/T|frameshift_variant REV__PRKG2|p.N474Kfs*2|1|0.43|ENSG00000138669|chr4:81140655-81140656|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 407.7533874511719 2 407.753936 813.493319 NaN NaN NaN NaN NaN NaN NaN 137.6 1 137.6 137.1 138.1 0 0 0 0 0.23711 1 27296 27296 0.063987 0.055711 1 + 48839 16476 32527 32548 47951 47951 0.07911177259836677 VGAKHPKL 8 Unmodified _VGAKHPKL_ 0 0 0 REV__KCNK3|p.G276Vfs*52|1|0.29|ENSG00000171303|chr2:26728206-26728206|G/-|frameshift_variant REV__KCNK3|p.G276Vfs*52|1|0.29|ENSG00000171303|chr2:26728206-26728206|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.249267578125 2 425.268887 848.523222 -0.80719 -0.00034327 -3.3951 -0.0014438 -4.2023 -0.0017871 425.26826166113244 12.143 0.10293 11.134 11.069 11.172 -1.0098 4 2 2 0 0 0 0.88047 1 1655 1655 0.79363 0 1 251950 + 48840 23703 32528 32549 47952 47952 0.09290116205158938 VGAKLKPYIY 10 Unmodified _VGAKLKPYIY_ 0 0 0 REV__ENST00000497010.1_1_1:45435697-45452248:-|nuORF REV__ENST00000497010.1_1_1:45435697-45452248:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3228149414062 2 576.344792 1150.67503 NaN NaN NaN NaN NaN NaN NaN 150.35 1 150.35 149.85 150.85 0 0 0 0 2.8426 1 30101 30101 0.26539 0 1 + 48841 22396 32529 32550 47953 47953 0.1057205244223951 VGAKLRLNY 9 Unmodified _VGAKLRLNY_ 0 0 0 REV__nc|ENSG00000178209|Q15149-7|PLEC REV__nc|ENSG00000178209|Q15149-7|PLEC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.21734619140625 3 345.209948 1032.60801 NaN NaN NaN NaN NaN NaN NaN 81.26 1 81.26 80.76 81.76 0 0 0 0 0.23508 1 15823 15823 1.1933 0.12188 1 + 48842 18594 32530 32551 47954 47954 0.09301441951129163 VGALFQPDSF 10 Unmodified _VGALFQPDSF_ 0 0 0 CON__ENSEMBL:ENSBTAP00000025008 CON__ENSEMBL:ENSBTAP00000025008 CON__ENSEMBL:ENSBTAP00000025008 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2737426757812 2 540.771657 1079.52876 0.27545 0.00014895 0.41496 0.0002244 0.69041 0.00037335 540.7713816993453 112.02 0.31037 112.02 111.87 112.18 0 10 8 2 0 0 0 0.69553 1 22016 22016 11.64 0 1 2537400 + 48843 645 32531 32552 47955 47955 -0.007822497936786021 VGALGIMN 8 Unmodified _VGALGIMN_ 0 0 0 ENSG00000184261|ENST00000327876|KCNK12 ENSG00000184261|ENST00000327876|KCNK12 ENSG00000184261|ENST00000327876|KCNK12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7125549316406 2 387.712556 773.41056 -0.067112 -2.602E-05 0.40807 0.00015821 0.34095 0.00013219 387.7126218295148 30.237 0.80643 30.237 29.919 30.725 0 47 22 3 0 0 0 0.76728 1 5430 5430 5.7604 0 1 4281500 48844 6900 32532 32553 47956 47956 0.01479099416826557 VGALLLET 8 Unmodified _VGALLLET_ 0 0 0 REV__CYP27B1|p.H441Tfs*33|2|0.49|ENSG00000111012|chr12:57763703-57763703|G/-|frameshift_variant REV__CYP27B1|p.H441Tfs*33|2|0.49|ENSG00000111012|chr12:57763703-57763703|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 408.2476501464844 2 408.247286 814.48002 NaN NaN NaN NaN NaN NaN NaN 95.789 1 91.739 91.239 92.239 -4.0496 0 0 0 0.21486 1 18779 18779 2.5775 1.7838 1 + 48845 13625 32533 32554 47957 47957 0.06535881637239527 VGALPFSA 8 Unmodified _VGALPFSA_ 0 0 0 ENST00000488158.5_1_X:118533366-118560222:+|nuORF;nc|ENSG00000077713|Q8WUT9-2|SLC25A43;SLC25A43|p.Q320Rfs*6|1|0.11|ENSG00000077713|chrX:119452994-119452994|C/-|frameshift_variant;ENSG00000077713|ENST00000217909|SLC25A43 ENST00000488158.5_1_X:118533366-118560222:+|nuORF ENST00000488158.5_1_X:118533366-118560222:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2115478515625 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 56.811 1 56.811 56.311 57.311 0 0 0 0 0.2343 1 10853 10853 0.62683 0 1 48846 1561 32534 32555 47958 47958 0.02215056777231439 VGALYLLYGLY 11 Unmodified _VGALYLLYGLY_ 0 0 0 SNAPC1|p.D214*|1|0.21|ENSG00000023608|chr14:61776192-61776193|-/T|frameshift_variant;SNAPC1|p.F213Lfs*7|2|0.15|ENSG00000023608|chr14:61776193-61776193|T/-|frameshift_variant;ENSG00000023608|ENST00000216294|SNAPC1 SNAPC1|p.D214*|1|0.21|ENSG00000023608|chr14:61776192-61776193|-/T|frameshift_variant SNAPC1|p.D214*|1|0.21|ENSG00000023608|chr14:61776192-61776193|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7548217773438 2 622.849907 1243.68526 NaN NaN NaN NaN NaN NaN NaN 120.77 1 116.25 115.75 116.75 -4.5221 0 0 0 0.23199 1 23809 23809 6.7232 1.4925 1 48847 1133 32535 32556 47959 47959 0.07316615376817026 VGAMGLRAG 9 Unmodified _VGAMGLRAG_ 0 0 0 REV__nc|ENSG00000143322|P42684-2|ABL2 REV__nc|ENSG00000143322|P42684-2|ABL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 416.2200012207031 2 416.228905 830.443257 NaN NaN NaN NaN NaN NaN NaN 85.409 1 81.744 81.244 82.244 -3.6641 0 0 0 0.23508 1 16698 16698 8.5933 3.3626 1 + 48848 16714 32536 32557 47960 47960 0.021253065396763304 VGAMMLGMGL 10 Unmodified _VGAMMLGMGL_ 0 0 0 REV__TMEM64|p.V200A|1|0.29|ENSG00000180694|chr8:90645307-90645307|A/G|missense_variant REV__TMEM64|p.V200A|1|0.29|ENSG00000180694|chr8:90645307-90645307|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2640075683594 2 490.242309 978.470065 NaN NaN NaN NaN NaN NaN NaN 37.665 1 37.665 37.165 38.165 0 0 0 0 2.8426 1 6969 6969 0.26539 0.14252 1 + 48849 24823 32537 32558 47961 47961 -0.0200308895565513 VGAMRRPWA 9 Unmodified _VGAMRRPWA_ 0 0 0 REV__ENST00000485486.1_1_X:48334751-48336839:+|nuORF REV__ENST00000485486.1_1_X:48334751-48336839:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2705078125 2 522.282003 1042.54945 NaN NaN NaN NaN NaN NaN NaN 154.29 1 154.29 153.79 154.79 0 0 0 0 0.19634 1 30924 30924 0.0033805 0 1 + 48850 22222 32538 32559 47962 47962 0.029880621050097034 VGAMRRPWA 9 Unmodified _VGAMRRPWA_ 0 0 0 REV__ENST00000485486.1_1_X:48334751-48336839:+|nuORF REV__ENST00000485486.1_1_X:48334751-48336839:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2822875976562 2 522.282003 1042.54945 NaN NaN NaN NaN NaN NaN NaN 89.438 1 85.394 84.894 85.894 -4.0443 0 0 0 0.23508 1 17040 17040 8.5933 0.68312 1 + 48851 22222 32538 32559 47963 47963 0.029880621050097034 VGAMRRPWA 9 Unmodified _VGAMRRPWA_ 0 0 0 REV__ENST00000485486.1_1_X:48334751-48336839:+|nuORF REV__ENST00000485486.1_1_X:48334751-48336839:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27099609375 2 522.282003 1042.54945 NaN NaN NaN NaN NaN NaN NaN 157.73 1 152.46 151.96 152.96 -5.2712 0 0 0 0.19656 1 30596 30596 0.20686 0 1 + 48852 22222 32538 32559 47964 47964 0.029880621050097034 VGAPAAQQ 8 Unmodified _VGAPAAQQ_ 0 0 0 ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3903198242188 1 741.388979 740.381703 0.60027 0.00044503 -0.21492 -0.00015934 0.38535 0.00028569 741.3890547609836 40.015 0.31349 40.015 39.859 40.173 0 11 8 2 0 0 0 0.76728 1 7441 7441 5.7604 0 1 2497700 48853 7265 32539 32560 47965 47965 0.0011269811204783764 VGAPAAQQ 8 Unmodified _VGAPAAQQ_ 0 0 0 ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3922119140625 1 741.388979 740.381703 0.17936 0.00013297 -0.12942 -9.5952E-05 0.049934 3.702E-05 741.3888531690014 42.486 0.38464 39.835 39.708 40.093 -2.651 12 10 2 0 0 0 8448 1 7652 7652 0.0082765 0 1 2159200 48854 7265 32539 32560 47966 47966 0.0011269811204783764 VGAPAWLA 8 Unmodified _VGAPAWLA_ 0 0 0 REV__ENST00000545417.5_1_1:44173220-44201909:+|nuORF REV__ENST00000545417.5_1_1:44173220-44201909:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3992309570312 1 784.435201 783.427924 0.67965 0.00053314 -2.2935 -0.0017991 -1.6138 -0.0012659 784.4345807885301 165.71 0.10091 160.76 160.7 160.8 -4.9484 4 2 2 0 0 0 8448 1 32397 32397 0 0 1 13064000 + 48855 22888 32540 32561 47967 47967 0.02754763014127093 VGAPFSIESDQ 11 Unmodified _VGAPFSIESDQ_ 0 0 0 REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3348388671875 2 575.274761 1148.53497 0.29172 0.00016782 0.27947 0.00016077 0.57119 0.00032859 575.274715436809 135.4 1.4612 135.4 134.85 136.31 0 59 41 3 0 0 0 0.7348 1 26795 26795 9.3831 0 1 6005100 + 48856 15103 32541 32562 47968 47968 -0.033357763528101714 VGAPGHLV 8 Unmodified _VGAPGHLV_ 0 0 0 REV__NLRP7|p.E381Rfs*35|1|0.34|ENSG00000167634|chr19:54939678-54939678|C/-|frameshift_variant REV__NLRP7|p.E381Rfs*35|1|0.34|ENSG00000167634|chr19:54939678-54939678|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2125244140625 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 51.506 1 48.624 48.124 49.124 -2.8824 0 0 0 0.23711 1 9786 9786 0.12286 0 1 + 48857 17948 32542 32563 47969 47969 0.038898788713822796 VGAPLALALPG 11 Unmodified _VGAPLALALPG_ 0 0 0 ITGA7|p.Q76L|1|0.24|ENSG00000135424|chr12:55703158-55703158|T/A|missense_variant ITGA7|p.Q76L|1|0.24|ENSG00000135424|chr12:55703158-55703158|T/A|missense_variant ITGA7|p.Q76L|1|0.24|ENSG00000135424|chr12:55703158-55703158|T/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2642517089844 2 489.80276 977.590967 0.062373 3.0551E-05 0.25048 0.00012268 0.31285 0.00015323 489.80287200303025 23.531 0.35236 22.078 21.888 22.24 -1.4535 15 9 2 0 0 0 0.9401 1 3814 3814 10.824 1.4765 1 766860 48858 11961 32543 32564 47970 47970 0.10127521345316381 VGAPLLRKKL 10 Unmodified _VGAPLLRKKL_ 0 0 0 REV__ENST00000520096.5_1_8:94359025-94433012:-|nuORF REV__ENST00000520096.5_1_8:94359025-94433012:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.778564453125 2 547.874051 1093.73355 NaN NaN NaN NaN NaN NaN NaN 78.916 1 78.916 78.416 79.416 0 0 0 0 2.8426 1 15359 15359 0 0 1 + 48859 22631 32544 32565 47971 47971 0.19043153807365343 VGAPLLRKKL 10 Unmodified _VGAPLLRKKL_ 0 0 0 REV__ENST00000520096.5_1_8:94359025-94433012:-|nuORF REV__ENST00000520096.5_1_8:94359025-94433012:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.77685546875 2 547.874051 1093.73355 NaN NaN NaN NaN NaN NaN NaN 110.52 1 110.52 110.02 111.02 0 0 0 0 0.22588 1 21736 21736 1.8442 0 1 + 48860 22631 32544 32565 47972 47972 0.19043153807365343 VGAQAVSRSDP 11 Unmodified _VGAQAVSRSDP_ 0 0 0 REV__nc|nan|Q6UX73|C16orf89 REV__nc|nan|Q6UX73|C16orf89 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7800903320312 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 43.454 1 40.735 40.235 41.235 -2.7191 0 0 0 0.19157 1 8146 8146 1.4074 1.2001 1 + 48861 24339 32545 32566 47973 47973 0.00718465461204687 VGAQILMYTV 10 Unmodified _VGAQILMYTV_ 0 0 0 ZNF45|p.K442Nfs*98|2|0.28|ENSG00000124459|chr19:43914110-43914110|T/-|frameshift_variant ZNF45|p.K442Nfs*98|2|0.28|ENSG00000124459|chr19:43914110-43914110|T/-|frameshift_variant ZNF45|p.K442Nfs*98|2|0.28|ENSG00000124459|chr19:43914110-43914110|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7787475585938 2 547.79936 1093.58417 NaN NaN NaN NaN NaN NaN NaN 133.58 1 128.94 128.44 129.44 -4.6399 0 0 0 0.22588 1 26337 26337 6.7232 0 1 48862 26621 32546 32567 47974 47974 0.04111840402424605 VGAQLRTK 8 Unmodified _VGAQLRTK_ 0 0 0 REV__ENSG00000145832|ENST00000681962|SLC25A48 REV__ENSG00000145832|ENST00000681962|SLC25A48 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.23468017578125 2 436.769252 871.52395 -0.71204 -0.000311 -1.6075 -0.00070209 -2.3195 -0.0010131 436.7688096672867 12.824 1.0381 11.695 11.421 12.459 -1.1293 38 29 2 0 0 0 1.0249 1 1584 1584 2.5775 0 1 522530 + 48863 16856 32547 32568 47975 47975 0.0830491085422409 VGARALYVKVQ 11 Unmodified _VGARALYVKVQ_ 0 0 0 ENSG00000179104|ENST00000321196|TMTC2;TMTC2|p.Y457Mfs*6|1|0.29|ENSG00000179104|chr12:82896527-82896527|T/-|frameshift_variant;ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.25|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant ENSG00000179104|ENST00000321196|TMTC2 ENSG00000179104|ENST00000321196|TMTC2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2781982421875 2 602.364047 1202.71354 NaN NaN NaN NaN NaN NaN NaN 69.088 1 65.552 65.052 66.052 -3.5362 0 0 0 0.23634 1 13002 13002 3.2813 0.54611 1 48864 6611 32548 32569 47976 47976 0.1202935807675658 VGARLRRPR 9 Unmodified _VGARLRRPR_ 0 0 0 REV__ENST00000275525.7_1_7:45928064-45928574:+|nuORF REV__ENST00000275525.7_1_7:45928064-45928574:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2802734375 2 540.84669 1079.67883 NaN NaN NaN NaN NaN NaN NaN 61.922 1 58.682 58.182 59.182 -3.2395 0 0 0 0.23508 1 11600 11600 2.3027 0 1 + 48865 20292 32549 32570 47977 47977 0.1421757977930156 VGASEMLL 8 Unmodified _VGASEMLL_ 0 0 0 OR4M1|p.F113L|1|0.09|ENSG00000176299|chr14:19780661-19780661|C/A|missense_variant OR4M1|p.F113L|1|0.09|ENSG00000176299|chr14:19780661-19780661|C/A|missense_variant OR4M1|p.F113L|1|0.09|ENSG00000176299|chr14:19780661-19780661|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.114013671875 2 410.217672 818.42079 NaN NaN NaN NaN NaN NaN NaN 129.9 1 125.26 124.76 125.76 -4.6359 0 0 0 0.21486 1 25601 25601 5.7604 0 1 48866 12731 32550 32571 47978 47978 0.004316623514000639 VGASLGTTGTV 11 Unmodified _VGASLGTTGTV_ 0 0 0 REV__ENSG00000205592|ENST00000454784|MUC19 REV__ENSG00000205592|ENST00000454784|MUC19 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78167724609375 2 481.761289 961.508025 -0.066683 -3.2125E-05 0.35394 0.00017052 0.28726 0.00013839 481.76144636370134 103.38 0.67719 99.197 98.907 99.584 -4.1861 30 19 2 0 0 0 0.61937 1 20389 20389 17.113 0 1 1749300 + 48867 19595 32551 32572 47979 47979 0.02573159826670235 VGASSHHHYSY 11 Unmodified _VGASSHHHYSY_ 0 0 0 REV__KRT74|p.P476H|1|0.43|ENSG00000170484|chr12:52567132-52567132|G/T|missense_variant REV__KRT74|p.P476H|1|0.43|ENSG00000170484|chr12:52567132-52567132|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7525634765625 2 622.775793 1243.53703 NaN NaN NaN NaN NaN NaN NaN 132.32 1 127.68 127.18 128.18 -4.6399 0 0 0 0.23264 1 26083 26083 6.2058 0 1 + 48868 23740 32552 32573 47980 47980 -0.07499302824339793 VGASSHHHYSY 11 Unmodified _VGASSHHHYSY_ 0 0 0 REV__KRT74|p.P476H|1|0.43|ENSG00000170484|chr12:52567132-52567132|G/T|missense_variant REV__KRT74|p.P476H|1|0.43|ENSG00000170484|chr12:52567132-52567132|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7772827148438 2 622.775793 1243.53703 NaN NaN NaN NaN NaN NaN NaN 19.737 1 18.412 17.912 18.912 -1.3251 0 0 0 0.22862 1 3027 3027 9.3831 0.63772 1 + 48869 23740 32552 32573 47981 47981 -0.07499302824339793 VGASTYIT 8 Unmodified _VGASTYIT_ 0 0 0 REV__ENSG00000197241|ENST00000400906|SLC2A7 REV__ENSG00000197241|ENST00000400906|SLC2A7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3869018554688 1 811.41961 810.412334 0.69769 0.00056612 -2.942 -0.0023872 -2.2443 -0.0018211 811.418652153883 171.05 0.27917 166.18 166.05 166.33 -4.873 11 7 2 0 0 0 0.73426 1 33865 33865 9.3474 0 1 13583000 + 48870 19316 32553 32574 47982 47982 -0.00045568293580799946 VGASVTTT 8 Unmodified _VGASVTTT_ 0 0 0 REV__ENSG00000205592|ENST00000454784|MUC19 REV__ENSG00000205592|ENST00000454784|MUC19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 368.21112060546875 2 368.197793 734.381034 NaN NaN NaN NaN NaN NaN NaN 34.456 1 34.456 33.956 34.956 0 0 0 0 0.23749 1 6305 6305 0.12286 0.11459 1 + 48871 19595 32554 32575 47983 47983 0.0032185867231646625 VGATASTL 8 Unmodified _VGATASTL_ 0 0 0 ENST00000263269.3_1_19:48946008-48947172:+|nuORF ENST00000263269.3_1_19:48946008-48947172:+|nuORF ENST00000263269.3_1_19:48946008-48947172:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20159912109375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 110.35 1 105.98 105.48 106.48 -4.3776 0 0 0 0.21486 1 21751 21751 5.7604 0 1 48872 8323 32555 32576 47984 47984 0.015661625349594033 VGATLGDESI 10 Unmodified _VGATLGDESI_ 0 0 0 tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1 tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1 tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24444580078125 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 109.41 1 109.41 108.91 109.91 0 0 0 0 0.22569 1 21512 21512 15.847 0 1 48873 26136 32556 32577 47985 47985 -0.0054283292729451205 VGATLTGVG 9 Unmodified _VGATLTGVG_ 0 0 0 ENSG00000090432|ENST00000264198|MUL1 ENSG00000090432|ENST00000264198|MUL1 ENSG00000090432|ENST00000264198|MUL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7214660644531 2 387.721436 773.428318 -0.33443 -0.00012967 0.48854 0.00018942 0.15412 5.9754E-05 387.72155848929964 70.926 0.67206 67.677 67.285 67.957 -3.2492 30 18 2 0 0 0 0.29146 1 13838 13838 32.117 3.9437 1 2917400 48874 1784 32557 32578 47986 47986 0.032541379433382644 VGATRLTR 8 Unmodified _VGATRLTR_ 0 0 0 REV__ENSG00000165478|ENST00000298251|HEPACAM REV__ENSG00000165478|ENST00000298251|HEPACAM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2284240722656 2 437.266876 872.519199 NaN NaN NaN NaN NaN NaN NaN 110.41 1 106.03 105.53 106.53 -4.3776 0 0 0 0.2343 1 21762 21762 0.25148 0 1 + 48875 17773 32558 32579 47987 47987 0.07784026711453862 VGATSSGAKAP 11 Unmodified _VGATSSGAKAP_ 0 0 0 REV__ENST00000462049.1_1_1:156554620-156555034:+|nuORF REV__ENST00000462049.1_1_1:156554620-156555034:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.83795166015625 3 315.83818 944.49271 NaN NaN NaN NaN NaN NaN NaN 24.297 1 22.443 21.943 22.943 -1.8534 0 0 0 0.23698 1 3945 3945 0.50596 0.047615 1 + 48876 19118 32559 32580 47988 47988 0.018242930294718462 VGATTALS 8 Unmodified _VGATTALS_ 0 0 0 ENST00000333337.3_1_21:34398410-34398569:+|nuORF;ENST00000430860.1_1_21:34398410-34399226:+|nuORF ENST00000333337.3_1_21:34398410-34398569:+|nuORF ENST00000333337.3_1_21:34398410-34398569:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201904296875 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 149.25 1 149.25 148.75 149.75 0 0 0 0 0.21486 1 29878 29878 2.8892 0 1 48877 8790 32560 32581 47989 47989 0.015661625349594033 VGATTALS 8 Unmodified _VGATTALS_ 0 0 0 ENST00000333337.3_1_21:34398410-34398569:+|nuORF;ENST00000430860.1_1_21:34398410-34399226:+|nuORF ENST00000333337.3_1_21:34398410-34398569:+|nuORF ENST00000333337.3_1_21:34398410-34398569:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018127441406 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 154.68 1 149.43 148.93 149.93 -5.2526 0 0 0 0.21486 1 29992 29992 2.8892 0 1 48878 8790 32560 32581 47990 47990 0.015661625349594033 VGAVDVTFHH 10 Unmodified _VGAVDVTFHH_ 0 0 0 REV__ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant REV__ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2752685546875 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 120.07 1 120.07 119.57 120.57 0 0 0 0 0.22588 1 23664 23664 7.2892 0 1 + 48879 13146 32561 32582 47991 47991 -0.001803118423140404 VGAVEKTK 8 Unmodified _VGAVEKTK_ 0 0 0 ENSG00000173267|ENST00000372017|SNCG;ENST00000465679.5_1_10:88718421-88722579:+|nuORF ENSG00000173267|ENST00000372017|SNCG ENSG00000173267|ENST00000372017|SNCG MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 416.26434326171875 2 416.25036 830.486168 NaN NaN NaN NaN NaN NaN NaN 77.689 1 74.03 73.53 74.53 -3.6588 0 0 0 0.21486 1 14796 14796 2.8892 0 1 48880 6283 32562 32583 47992 47992 0.06414399868742748 VGAVEWAWWVP 11 Unmodified _VGAVEWAWWVP_ 0 0 0 ENST00000453080.5_1_15:43882136-43882349:-|nuORF ENST00000453080.5_1_15:43882136-43882349:-|nuORF ENST00000453080.5_1_15:43882136-43882349:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 433.88909912109375 3 433.888874 1298.64479 NaN NaN NaN NaN NaN NaN NaN 43.62 1 40.872 40.372 41.372 -2.7475 0 0 0 0.23698 1 7880 7880 1.4551 0 1 48881 10001 32563 32584 47993 47993 0.007416937770130971 VGAVHLAERVK 11 Unmodified _VGAVHLAERVK_ 0 0 0 REV__ENSG00000119698|ENST00000304338|PPP4R4 REV__ENSG00000119698|ENST00000304338|PPP4R4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2564086914062 2 589.853847 1177.69314 NaN NaN NaN NaN NaN NaN NaN 171.81 1 166.89 166.39 167.39 -4.9149 0 0 0 0.23379 1 34048 34048 5.2969 0 1 + 48882 15592 32564 32585 47994 47994 0.11140187416935987 VGAVPHGVPS 10 Unmodified _VGAVPHGVPS_ 0 0 0 HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant;HIVEP2|p.N2325Kfs*44|1|0.35|ENSG00000010818|chr6:142753473-142753474|-/T|frameshift_variant;ENSG00000010818|ENST00000367603|HIVEP2 HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24462890625 2 460.253434 918.492316 NaN NaN NaN NaN NaN NaN NaN 96.528 1 92.43 91.93 92.93 -4.0978 0 0 0 0.22588 1 18930 18930 10.824 1.4765 1 48883 1066 32565 32586 47995 47995 0.029809181002860896 VGAWKRFA 8 Unmodified _VGAWKRFA_ 0 0 0 REV__ENST00000398146.3_2_2:88093672-88094688:-|nuORF REV__ENST00000398146.3_2_2:88093672-88094688:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 312.216796875 3 312.1801 933.518471 NaN NaN NaN NaN NaN NaN NaN 62.225 1 58.856 58.356 59.356 -3.3694 0 0 0 0.21486 1 11613 11613 0.45834 0 1 + 48884 21324 32566 32587 47996 47996 0.04905232062412779 VGAWKRFA 8 Unmodified _VGAWKRFA_ 0 0 0 REV__ENST00000398146.3_2_2:88093672-88094688:-|nuORF REV__ENST00000398146.3_2_2:88093672-88094688:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.19354248046875 3 312.1801 933.518471 NaN NaN NaN NaN NaN NaN NaN 72.736 1 69.197 68.697 69.697 -3.5385 0 0 0 0.21486 1 13791 13791 0.45834 0 1 + 48885 21324 32566 32587 47997 47997 0.04905232062412779 VGAYRVPFA 9 Unmodified _VGAYRVPFA_ 0 0 0 REV__tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1 REV__tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2721862792969 2 490.271627 978.528701 NaN NaN NaN NaN NaN NaN NaN 171.69 1 171.69 171.19 172.19 0 0 0 0 0.23508 1 35392 35392 8.5933 0.68312 1 + 48886 24873 32567 32588 47998 47998 0.03857794996986286 VGCAGAVG 8 Unmodified _VGCAGAVG_ 0 0 0 ENST00000596587.1_1_19:57078454-57078694:-|nuORF ENST00000596587.1_1_19:57078454-57078694:-|nuORF ENST00000596587.1_1_19:57078454-57078694:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1869812011719 2 317.154874 632.295196 NaN NaN NaN NaN NaN NaN NaN 17.17 1 15.898 15.398 16.398 -1.2722 0 0 0 0.21486 1 2513 2513 0.79363 0 1 48887 11668 32568 32589 47999 47999 -0.035660047141618634 VGCAHVKILVL 11 Unmodified _VGCAHVKILVL_ 0 0 0 REV__ENST00000370872.7_1_1:75175905-75198642:-|nuORF REV__ENST00000370872.7_1_1:75175905-75198642:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3331909179688 2 576.352094 1150.68964 NaN NaN NaN NaN NaN NaN NaN 136.35 1 131.46 130.96 131.96 -4.8951 0 0 0 0.23324 1 26201 26201 5.7319 0.43497 1 + 48888 20993 32569 32590 48000 48000 0.12031801318721591 VGCAQAKL 8 Unmodified _VGCAQAKL_ 0 0 0 OCEL1|p.R191_Q192insGL|1|0.07|ENSG00000099330|chr19:17227960-17227961|-/GGCCTC|inframe_insertion;ENST00000596279.1_1_19:17337742-17339154:+|nuORF;OCEL1|p.R191Sfs*8|1|0.1|ENSG00000099330|chr19:17227959-17227960|-/CA|frameshift_variant;ENST00000594283.5_1_19:17337742-17339731:+|nuORF;ENSG00000099330|ENST00000215061|OCEL1 OCEL1|p.R191_Q192insGL|1|0.07|ENSG00000099330|chr19:17227960-17227961|-/GGCCTC|inframe_insertion OCEL1|p.R191_Q192insGL|1|0.07|ENSG00000099330|chr19:17227960-17227961|-/GGCCTC|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 395.2174072265625 2 395.218006 788.421459 NaN NaN NaN NaN NaN NaN NaN 69.382 1 65.992 65.492 66.492 -3.3903 0 0 0 0.21486 1 13120 13120 2.5775 0 1 48889 1887 32570 32591 48001 48001 0.018785017911000068 VGCFGGCC 8 Unmodified _VGCFGGCC_ 0 0 0 REV__ENSG00000243232|ENST00000289269|PCDHAC2 REV__ENSG00000243232|ENST00000289269|PCDHAC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 373.12750244140625 2 373.126945 744.239337 NaN NaN NaN NaN NaN NaN NaN 60.629 1 57.406 56.906 57.906 -3.2237 0 0 0 0.21486 1 11341 11341 0.79363 0.79363 1 + 48890 19799 32571 32592 48002 48002 -0.14301297217662068 VGCFHPIT 8 Unmodified _VGCFHPIT_ 0 0 0 REV__nc|ENSG00000188263|Q6ZVW7-2|IL17REL REV__nc|ENSG00000188263|Q6ZVW7-2|IL17REL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21710205078125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 85.028 1 85.028 84.528 85.528 0 0 0 0 0.21486 1 16592 16592 5.7604 0 1 + 48891 19138 32572 32593 48003 48003 -0.019854982088986617 VGCFHPIT 8 Unmodified _VGCFHPIT_ 0 0 0 REV__nc|ENSG00000188263|Q6ZVW7-2|IL17REL REV__nc|ENSG00000188263|Q6ZVW7-2|IL17REL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21612548828125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 81.1 1 77.261 76.761 77.761 -3.8392 0 0 0 0.21486 1 15394 15394 10.183 0.83596 1 + 48892 19138 32572 32593 48004 48004 -0.019854982088986617 VGCGLSLA 8 Unmodified _VGCGLSLA_ 0 0 0 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.207763671875 2 360.191457 718.368361 NaN NaN NaN NaN NaN NaN NaN 52.649 1 49.562 49.062 50.062 -3.0876 0 0 0 0.23749 1 9683 9683 0.12286 0 1 48893 7774 32573 32594 48005 48005 -0.0020887599156367287 VGCGRPGMAS 10 Unmodified _VGCGRPGMAS_ 0 0 0 REV__ENSG00000131370|ENST00000383791|SH3BP5 REV__ENSG00000131370|ENST00000383791|SH3BP5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1466064453125 3 312.145962 933.416056 NaN NaN NaN NaN NaN NaN NaN 33.271 1 31.056 30.556 31.556 -2.2158 0 0 0 0.22588 1 5792 5792 0.77653 0.31819 1 + 48894 16068 32574 32595 48006 48006 -0.05331545063006615 VGCHGCCA 8 Unmodified _VGCHGCCA_ 0 0 0 REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|90|1|anti-sense REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|90|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.22076416015625 2 375.130019 748.245485 NaN NaN NaN NaN NaN NaN NaN 72.604 1 72.604 72.104 73.104 0 0 0 0 0.21486 1 14081 14081 2.8892 2.0956 1 + 48895 13417 32575 32596 48007 48007 -0.13870778986142795 VGCHGCCA 8 Unmodified _VGCHGCCA_ 0 0 0 REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|90|1|anti-sense REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|90|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21826171875 2 375.130019 748.245485 NaN NaN NaN NaN NaN NaN NaN 59.304 1 55.99 55.49 56.49 -3.3139 0 0 0 0.2396 1 11026 11026 0 0 1 + 48896 13417 32575 32596 48008 48008 -0.13870778986142795 VGCHGCCA 8 Unmodified _VGCHGCCA_ 0 0 0 REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|90|1|anti-sense REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|90|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2118835449219 2 375.130019 748.245485 NaN NaN NaN NaN NaN NaN NaN 81.349 1 77.661 77.161 78.161 -3.6879 0 0 0 0.2396 1 15501 15501 0 0 1 + 48897 13417 32575 32596 48009 48009 -0.13870778986142795 VGCKKGGG 8 Unmodified _VGCKKGGG_ 0 0 0 REV__ENST00000526317.5_1_1:201454496-201465431:-|nuORF REV__ENST00000526317.5_1_1:201454496-201465431:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 353.24188232421875 2 353.189248 704.363944 NaN NaN NaN NaN NaN NaN NaN 15.861 1 15.861 15.361 16.361 0 0 0 0 0.21486 1 2441 2441 0.79363 0.79363 1 + 48898 17361 32576 32597 48010 48010 -6.340414449823584E-05 VGCKRELMPQ 10 Unmodified _VGCKRELMPQ_ 0 0 0 REV__AGBL1|p.M908Nfs*57|1|0.3|ENSG00000273540|chr15:86554401-86554402|-/A|frameshift_variant REV__AGBL1|p.M908Nfs*57|1|0.3|ENSG00000273540|chr15:86554401-86554402|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7129211425781 3 387.535338 1159.58418 -1.6267 -0.00063041 -0.66927 -0.00025936 -2.296 -0.00088977 387.5350664699348 19.606 0.48801 17.971 17.704 18.192 -1.6351 24 13 3 0 0 0 0.76216 1 2948 2948 1.9064 0.69154 1 1723900 + 48899 12977 32577 32598 48011 48011 0.010775171307841447 VGCLLAGS 8 Unmodified _VGCLLAGS_ 0 0 0 REV__ENSG00000161996|ENST00000293879|WDR90;REV__ENST00000552943.5_1_16:699416-703842:+|nuORF;REV__ENST00000549648.5_1_16:699416-706047:+|nuORF REV__ENST00000552943.5_1_16:699416-703842:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.205078125 2 360.191457 718.368361 NaN NaN NaN NaN NaN NaN NaN 37.058 1 34.72 34.22 35.22 -2.3375 0 0 0 0.23749 1 6549 6549 0.12286 0 1 + 48900 17477;22954;21500 32578 32599 48012 48012 -0.002088759915409355 VGCPGGKN 8 Unmodified _VGCPGGKN_ 0 0 0 REV__ENSG00000106125|ENST00000265299|MINDY4 REV__ENSG00000106125|ENST00000265299|MINDY4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 366.1838073730469 2 366.178881 730.343209 NaN NaN NaN NaN NaN NaN NaN 18.504 1 17.179 16.679 17.679 -1.3251 0 0 0 0.2396 1 2779 2779 0 0 1 + 48901 15034 32579 32600 48013 48013 -0.03274930794134434 VGCRLAPAE 9 Unmodified _VGCRLAPAE_ 0 0 0 REV__ENST00000493307.1_1_7:150020415-150021458:+|nuORF REV__ENST00000493307.1_1_7:150020415-150021458:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2382507324219 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 102 1 102 101.5 102.5 0 0 0 0 0.20628 1 20030 20030 21.747 3.6117 1 + 48902 20563 32580 32601 48014 48014 0.003732718485252917 VGCRLAPAE 9 Unmodified _VGCRLAPAE_ 0 0 0 REV__ENST00000493307.1_1_7:150020415-150021458:+|nuORF REV__ENST00000493307.1_1_7:150020415-150021458:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2378845214844 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 106.87 1 102.6 102.1 103.1 -4.2638 0 0 0 0.20628 1 21037 21037 21.747 2.3076 1 + 48903 20563 32580 32601 48015 48015 0.003732718485252917 VGCRLAPAE 9 Unmodified _VGCRLAPAE_ 0 0 0 REV__ENST00000493307.1_1_7:150020415-150021458:+|nuORF REV__ENST00000493307.1_1_7:150020415-150021458:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23828125 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 107.04 1 102.63 102.13 103.13 -4.4121 0 0 0 0.20628 1 20533 20533 21.747 0 1 + 48904 20563 32580 32601 48016 48016 0.003732718485252917 VGCRLAPAE 9 Unmodified _VGCRLAPAE_ 0 0 0 REV__ENST00000493307.1_1_7:150020415-150021458:+|nuORF REV__ENST00000493307.1_1_7:150020415-150021458:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23883056640625 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 106.77 1 102.68 102.18 103.18 -4.0913 0 0 0 0.20155 1 20531 20531 23.148 6.2061 1 + 48905 20563 32580 32601 48017 48017 0.003732718485252917 VGCSPPSF 8 Unmodified _VGCSPPSF_ 0 0 0 REV__ENST00000494378.1_1_1:235643345-235647829:-|nuORF REV__ENST00000494378.1_1_1:235643345-235647829:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 397.182861328125 2 397.181089 792.347625 NaN NaN NaN NaN NaN NaN NaN 130.87 1 126.03 125.53 126.53 -4.8355 0 0 0 0.21486 1 25128 25128 2.8892 0 1 + 48906 13166 32581 32602 48018 48018 -0.05685466371221537 VGCTKLGP 8 Unmodified _VGCTKLGP_ 0 0 0 REV__ENST00000492112.2_1_1:24305263-24306804:-|nuORF REV__ENST00000492112.2_1_1:24305263-24306804:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.71282958984375 2 387.712556 773.41056 0.25962 0.00010066 -0.083932 -3.2541E-05 0.17568 6.8115E-05 387.71244762254594 32.369 0.77428 30.342 29.798 30.572 -2.0264 52 21 3 0 0 0 8448 1 5524 5524 0.12286 0 1 3819600 + 48907 22330 32582 32603 48019 48019 0.01479099416826557 VGCTKLGP 8 Unmodified _VGCTKLGP_ 0 0 0 REV__ENST00000492112.2_1_1:24305263-24306804:-|nuORF REV__ENST00000492112.2_1_1:24305263-24306804:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7126159667969 2 387.712556 773.41056 -0.18287 -7.0902E-05 0.2635 0.00010216 0.080624 3.1259E-05 387.71265209804034 32.267 0.83207 30.119 29.795 30.627 -2.1483 52 23 4 0 0 0 8448 1 5587 5587 0.0082765 0 1 2915400 + 48908 22330 32582 32603 48020 48020 0.01479099416826557 VGCWCGMSS 9 Unmodified _VGCWCGMSS_ 0 0 0 REV__ZNF814|p.L54M|1|0.06|ENSG00000204514|chr19:57876919-57876919|G/T|missense_variant REV__ZNF814|p.L54M|1|0.06|ENSG00000204514|chr19:57876919-57876919|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16473388671875 3 310.448653 928.324129 NaN NaN NaN NaN NaN NaN NaN 35.218 1 32.942 32.442 33.442 -2.2766 0 0 0 0.23508 1 6187 6187 1.1933 0.12188 1 + 48909 25594 32583 32604 48021 48021 -0.14289971471680474 VGDAETHPPG 10 Unmodified _VGDAETHPPG_ 0 0 0 ENST00000493772.5_1_20:62372609-62373703:+|nuORF;ENST00000485897.5_1_20:62371738-62373703:+|nuORF ENST00000493772.5_1_20:62372609-62373703:+|nuORF ENST00000493772.5_1_20:62372609-62373703:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2655334472656 2 490.227613 978.440674 NaN NaN NaN NaN NaN NaN NaN 126.2 1 121.61 121.11 122.11 -4.5984 0 0 0 0.22569 1 24882 24882 15.847 2.3393 1 48910 10448 32584 32605 48022 48022 -0.049408703842800605 VGDCHSCC 8 Unmodified _VGDCHSCC_ 0 0 0 ENSG00000182566|ENST00000328853|CLEC4G ENSG00000182566|ENST00000328853|CLEC4G ENSG00000182566|ENST00000328853|CLEC4G MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 412.22393798828125 2 412.130216 822.245879 NaN NaN NaN NaN NaN NaN NaN 119.2 1 119.2 118.7 119.7 0 0 0 0 0.21486 1 23487 23487 0.79363 0.79363 1 48911 6794 32585 32606 48023 48023 -0.17235404056930292 VGDCWFLAAL 10 Unmodified _VGDCWFLAAL_ 0 0 0 ENSG00000214711|ENST00000403897|CAPN14 ENSG00000214711|ENST00000403897|CAPN14 ENSG00000214711|ENST00000403897|CAPN14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7698364257812 2 547.770603 1093.52665 NaN NaN NaN NaN NaN NaN NaN 12.513 1 11.383 10.883 11.883 -1.1293 0 0 0 0.22588 1 1537 1537 1.8442 0.19162 1 48912 7731 32586 32607 48024 48024 -0.016370018031238942 VGDEEEEDDEE 11 Unmodified _VGDEEEEDDEE_ 0 0 0 REV__nc|ENSG00000160050|Q9BUN5-3|CCDC28B REV__nc|ENSG00000160050|Q9BUN5-3|CCDC28B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 647.5233764648438 2 647.725691 1293.43683 0.42907 0.00027792 -4.2161 -0.0027309 -3.787 -0.0024529 648.2252823095575 167.06 0.211 162.11 162.05 162.26 -4.948 6 5 2 0 0 0 0.8912 1 32864 32864 0 0 1 32499000 + 48913 17389 32587 32608 48025 48025 -0.1981509424995238 VGDEQGRW 8 Unmodified _VGDEQGRW_ 0 0 0 REV__ENST00000525164.5_1_1:1248165-1249114:-|nuORF REV__ENST00000525164.5_1_1:1248165-1249114:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1512756347656 3 316.150758 945.430444 NaN NaN NaN NaN NaN NaN NaN 31.238 1 29.089 28.589 29.589 -2.1483 0 0 0 0.21486 1 5376 5376 0.45834 0 1 + 48914 22680 32588 32609 48026 48026 -0.04445433318846881 VGDERTKVK 9 Unmodified _VGDERTKVK_ 0 0 0 REV__ENST00000343388.11_1_17:60637450-60642387:+|nuORF REV__ENST00000343388.11_1_17:60637450-60642387:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.8910827636719 3 344.532979 1030.57711 -0.46983 -0.00016187 -0.57883 -0.00019943 -1.0487 -0.0003613 344.532632470987 13.668 0.13821 13.668 13.581 13.719 0 5 3 2 0 0 0 0.64253 1 1983 1983 0.029283 0 1 128550 + 48915 20734 32589 32610 48027 48027 0.06304243846238933 VGDEWLLP 8 Unmodified _VGDEWLLP_ 0 0 0 REV__ENST00000452404.6_1_3:196666301-196669112:-|nuORF REV__ENST00000452404.6_1_3:196666301-196669112:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 95.325 1 95.325 94.825 95.825 0 0 0 0 0.21486 1 18674 18674 1.8442 0.19162 1 + 48916 21818 32590 32611 48028 48028 0.003546936318684857 VGDFDPER 8 Unmodified _VGDFDPER_ 0 0 0 nc|ENSG00000162641|Q5T1N1-3|AKNAD1;AKNAD1|p.N719Kfs*23|1|0.16|ENSG00000162641|chr1:108823380-108823381|-/T|frameshift_variant;nc|ENSG00000162641|Q5T1N1-4|AKNAD1;ENSG00000162641|ENST00000370001|AKNAD1;ENST00000472781.2_1_1:109380150-109385886:-|nuORF nc|ENSG00000162641|Q5T1N1-3|AKNAD1 nc|ENSG00000162641|Q5T1N1-3|AKNAD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1465759277344 3 312.147013 933.41921 NaN NaN NaN NaN NaN NaN NaN 23.245 1 21.456 20.956 21.956 -1.7886 0 0 0 0.21486 1 3729 3729 1.6526 0 1 48917 113 32591 32612 48029 48029 -0.05016255412999726 VGDFIEESKR 10 Unmodified _VGDFIEESKR_ 0 0 0 VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant;nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2626953125 2 590.303852 1178.59315 NaN NaN NaN NaN NaN NaN NaN 142.89 1 138.23 137.73 138.73 -4.656 0 0 0 2.8426 1 28248 28248 0.0013812 0 1 48918 1231 32592 32613 48030 48030 0.010999052924944408 VGDFWDGF 8 Unmodified _VGDFWDGF_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86711112-86716803:+|nuORF ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.179931640625 3 314.804587 941.391933 0.18663 5.8752E-05 -0.21854 -6.8798E-05 -0.031911 -1.0046E-05 314.80441802012916 98.139 0.44791 93.87 93.638 94.086 -4.2692 13 12 2 0 0 0 1.0281 1 18751 18751 0.45834 0.45834 1 763780 48919 2865 32593 32614 48031 48031 -0.0811073895337131 VGDFWDGF 8 Unmodified _VGDFWDGF_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86711112-86716803:+|nuORF ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 314.804587 941.391933 -0.24057 -7.5734E-05 0.80933 0.00025478 0.56875 0.00017905 314.80477418829315 97.978 0.13683 93.88 93.774 93.911 -4.0978 0.005353 0.00048431 NaN 0.45834 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 492630 48920 2865 32593 32614 -0.0811073895337131 VGDGARFW 8 Unmodified _VGDGARFW_ 0 0 0 REV__ENST00000462901.5_1_3:88190218-88199018:-|nuORF REV__ENST00000462901.5_1_3:88190218-88199018:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 303.0932312011719 3 303.15221 906.434801 -0.60628 -0.00018379 0.54947 0.00016657 -0.056808 -1.7221E-05 303.15231199046264 58.187 0.65243 54.981 54.612 55.264 -3.2052 26 18 2 0 0 0 1.028 1 10808 10808 0.45834 0 1 583950 + 48921 21913 32594 32615 48032 48032 -0.022159241052804646 VGDGARFW 8 Unmodified _VGDGARFW_ 0 0 0 REV__ENST00000462901.5_1_3:88190218-88199018:-|nuORF REV__ENST00000462901.5_1_3:88190218-88199018:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 303.15221 906.434801 -0.5925 -0.00017962 0.1406 4.2624E-05 -0.4519 -0.00013699 303.1523149737299 55.243 0.46679 55.243 55.049 55.516 0 0.16266 -0.00016683 NaN 0.45834 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 796460 + 48922 21913 32594 32615 -0.022159241052804646 VGDGARFW 8 Unmodified _VGDGARFW_ 0 0 0 REV__ENST00000462901.5_1_3:88190218-88199018:-|nuORF REV__ENST00000462901.5_1_3:88190218-88199018:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 303.15221 906.434801 -0.37615 -0.00011403 0.27681 8.3914E-05 -0.099342 -3.0116E-05 303.1522785211212 57.926 0.7706 55.016 54.468 55.238 -2.9105 -0.064047 -4.2959E-05 NaN 0.45834 31 21 2 NaN NaN NaN NaN 0 NaN NaN 0 836180 + 48923 21913 32594 32615 -0.022159241052804646 VGDGVPGTWL 10 Unmodified _VGDGVPGTWL_ 0 0 0 ENST00000575894.1_1_16:697728-698187:+|nuORF ENST00000575894.1_1_16:697728-698187:+|nuORF ENST00000575894.1_1_16:697728-698187:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 500.2501525878906 2 500.758549 999.502546 0.044165 2.2116E-05 0.5038 0.00025228 0.54796 0.0002744 500.75874766060946 131.8 0.77618 127 126.61 127.39 -4.799 49 21 3 0 0 0 1.1246 1 25444 25444 0.26539 0.14252 1 6572700 48924 11460 32595 32616 48033 48033 0.002774810348682877 VGDGVPGTWL 10 Unmodified _VGDGVPGTWL_ 0 0 0 ENST00000575894.1_1_16:697728-698187:+|nuORF ENST00000575894.1_1_16:697728-698187:+|nuORF ENST00000575894.1_1_16:697728-698187:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 500.758549 999.502546 0.19353 9.6913E-05 0.29674 0.0001486 0.49028 0.00024551 500.7585493463729 127.08 0.7623 127.08 126.78 127.55 0 0.066521 -0.00017887 NaN 0.26539 48 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6685400 48925 11460 32595 32616 0.002774810348682877 VGDGVPGTWL 10 Unmodified _VGDGVPGTWL_ 0 0 0 ENST00000575894.1_1_16:697728-698187:+|nuORF ENST00000575894.1_1_16:697728-698187:+|nuORF ENST00000575894.1_1_16:697728-698187:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 500.758549 999.502546 -0.023183 -1.1609E-05 0.44719 0.00022393 0.424 0.00021232 500.7586748743952 131.63 0.84563 126.99 126.64 127.48 -4.6399 -0.026139 -2.8204E-05 NaN 0.26539 40 23 2 NaN NaN NaN NaN 0 NaN NaN 0 6828200 48926 11460 32595 32616 0.002774810348682877 VGDGVPGTWL 10 Unmodified _VGDGVPGTWL_ 0 0 0 ENST00000575894.1_1_16:697728-698187:+|nuORF ENST00000575894.1_1_16:697728-698187:+|nuORF ENST00000575894.1_1_16:697728-698187:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 500.758549 999.502546 -0.14371 -7.1963E-05 0.61113 0.00030603 0.46742 0.00023406 500.75879978042656 131.84 0.75224 126.98 126.64 127.39 -4.8527 -0.028665 0.00013598 NaN 0.26539 47 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6051700 48927 11460 32595 32616 0.002774810348682877 VGDHQFLL 8 Unmodified _VGDHQFLL_ 0 0 0 nc|ENSG00000116685|Q8IYS2-2|KIAA2013;ENSG00000116685|ENST00000376572|KIAA2013 nc|ENSG00000116685|Q8IYS2-2|KIAA2013 nc|ENSG00000116685|Q8IYS2-2|KIAA2013 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1679992675781 3 310.167749 927.481417 NaN NaN NaN NaN NaN NaN NaN 165.65 1 160.86 160.36 161.36 -4.7898 0 0 0 0.21486 1 33193 33193 0.45834 0 1 48928 12294 32596 32617 48034 48034 0.014775157260146443 VGDIPGVRF 9 Unmodified _VGDIPGVRF_ 0 0 0 ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF ENSG00000186468|ENST00000296674|RPS23 ENSG00000186468|ENST00000296674|RPS23 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2413330078125 2 480.269084 958.523616 -0.030816 -1.48E-05 -0.14182 -6.8113E-05 -0.17264 -8.2913E-05 480.269140523495 121.57 1.1026 121.57 120.93 122.03 0 104 30 5 0 0 0 0.029716 3 23968 23915;23955;23968 81.89 41.933 1 47642000 48929 7059 32597 32618 48035;48036;48037 48037 0.04269491134380132 VGDIPGVRF 9 Unmodified _VGDIPGVRF_ 0 0 0 ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF ENSG00000186468|ENST00000296674|RPS23 ENSG00000186468|ENST00000296674|RPS23 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2500305175781 2 480.269084 958.523616 0.14623 7.0231E-05 -0.021778 -1.0459E-05 0.12445 5.9772E-05 480.26900481753756 125.97 0.91986 121.37 120.86 121.78 -4.5984 75 25 4 0 0 0 0.12505 1 24801 24801 47.749 22.349 1 41338000 48930 7059 32597 32618 48038 48038 0.04269491134380132 VGDIPGVRF 9 Unmodified _VGDIPGVRF_ 0 0 0 ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF ENSG00000186468|ENST00000296674|RPS23 ENSG00000186468|ENST00000296674|RPS23 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7696228027344 2 480.269084 958.523616 0.30088 0.0001445 -0.12208 -5.8632E-05 0.1788 8.5871E-05 480.2689486678833 126.22 0.90874 121.42 120.91 121.82 -4.7958 76 25 4 0 0 0 0.25183 2 24200 24200;24209 34.402 8.7651 1 30039000 48931 7059 32597 32618 48039;48040 48039 0.04269491134380132 VGDIPGVRF 9 Unmodified _VGDIPGVRF_ 0 0 0 ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF ENSG00000186468|ENST00000296674|RPS23 ENSG00000186468|ENST00000296674|RPS23 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 480.269084 958.523616 0.15514 7.4508E-05 0.1179 5.6622E-05 0.27303 0.00013113 480.26906109804037 126.09 0.92962 121.44 120.95 121.88 -4.6495 -0.011603 0.00014755 NaN 81.89 73 25 5 NaN NaN NaN NaN 0 NaN NaN 0 24761000 48932 7059 32597 32618 0.04269491134380132 VGDISWTH 8 Unmodified _VGDISWTH_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2302551269531 2 457.721967 913.429381 -0.42184 -0.00019308 0.60752 0.00027807 0.18568 8.499E-05 457.722154387197 23.507 0.35027 21.718 21.494 21.844 -1.7886 22 9 3 0 0 0 0.64227 1 3752 3752 19.439 4.6007 1 4099200 48933 7385 32598 32619 48041 48041 -0.030796476877753776 VGDKPVSNF 9 Unmodified _VGDKPVSNF_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7687683105469 2 481.750724 961.486896 0.3675 0.00017704 0.092178 4.4407E-05 0.45968 0.00022145 481.7506926592342 47.242 0.74284 47.242 46.799 47.542 0 30 20 2 0 0 0 0.13841 1 8902 8902 40.239 27.999 1 997970 48934 6442 32599 32620 48042 48042 0.004611945178112364 VGDKPVSNF 9 Unmodified _VGDKPVSNF_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7690124511719 2 481.750724 961.486896 -0.085628 -4.1251E-05 0.1036 4.9908E-05 0.017969 8.6566E-06 481.75072601336717 50.159 0.59454 47.278 46.905 47.5 -2.8811 25 16 2 0 0 0 0.34246 1 9490 9490 33.445 27.239 1 1131800 48935 6442 32599 32620 48043 48043 0.004611945178112364 VGDLLTDV 8 Unmodified _VGDLLTDV_ 0 0 0 REV__nc|ENSG00000068878|Q14997-3|PSME4 REV__nc|ENSG00000068878|Q14997-3|PSME4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 416.2495422363281 2 416.226551 830.438549 NaN NaN NaN NaN NaN NaN NaN 83.597 1 79.989 79.489 80.489 -3.6079 0 0 0 0.21486 1 16343 16343 2.5775 0 1 + 48936 14234 32600 32621 48044 48044 0.016547008779070893 VGDLRSGA 8 Unmodified _VGDLRSGA_ 0 0 0 REV__ENST00000421703.5_1_1:183440373-183440658:-|nuORF REV__ENST00000421703.5_1_1:183440373-183440658:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7085876464844 2 387.70886 773.403166 -0.085706 -3.3229E-05 -0.24628 -9.5483E-05 -0.33198 -0.00012871 387.7088181704423 22.566 0.80586 22.566 22.121 22.927 0 42 22 3 0 0 0 0.7999 1 3753 3753 4.3292 0 1 3386100 + 48937 21514 32601 32622 48045 48045 0.007400831407608166 VGDLYDKKLK 10 Unmodified _VGDLYDKKLK_ 0 0 0 REV__nc|ENSG00000105486|P18858-2|LIG1 REV__nc|ENSG00000105486|P18858-2|LIG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2701416015625 2 589.842613 1177.67067 NaN NaN NaN NaN NaN NaN NaN 111.93 1 107.7 107.2 108.2 -4.2289 0 0 0 2.8426 1 21548 21548 0 0 1 + 48938 14994 32602 32623 48046 48046 0.08894543228666407 VGDMWILF 8 Unmodified _VGDMWILF_ 0 0 0 ENSG00000204642|ENST00000259951|HLA-F ENSG00000204642|ENST00000259951|HLA-F ENSG00000204642|ENST00000259951|HLA-F MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2687072753906 2 490.749139 979.483725 -1.844 -0.00090495 1.4757 0.0007242 -0.36831 -0.00018075 490.7500455418009 14.661 0.23194 13.45 13.282 13.513 -1.2106 9 6 2 0 0 0 1.028 1 1926 1926 0.79363 0 1 379710 48939 7601 32603 32624 48047 48047 -0.006837718605424925 VGDNDDDDD 9 Unmodified _VGDNDDDDD_ 0 0 0 REV__ENSG00000186340|ENST00000617924|THBS2 REV__ENSG00000186340|ENST00000617924|THBS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2632751464844 2 490.15979 978.305028 NaN NaN NaN NaN NaN NaN NaN 140.86 1 136 135.5 136.5 -4.8678 0 0 0 0.19624 1 27171 27171 0 0 1 + 48940 19028 32604 32625 48048 48048 -0.18499234756416172 VGDNYSDYEEY 11 Unmodified _VGDNYSDYEEY_ 0 0 0 tr|U7SLN9|U7SLN9_FUSNUThiaminebiosynthesisproteinThiFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02115PE=4SV=1 tr|U7SLN9|U7SLN9_FUSNUThiaminebiosynthesisproteinThiFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02115PE=4SV=1 tr|U7SLN9|U7SLN9_FUSNUThiaminebiosynthesisproteinThiFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02115PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 677.2953491210938 2 677.259504 1352.50446 NaN NaN NaN NaN NaN NaN NaN 166.75 1 166.75 166.25 167.25 0 0 0 0 0.22632 1 34003 34003 0 0 1 48941 25987 32605 32626 48049 48049 -0.15769599528493927 VGDQAVLAF 9 Unmodified _VGDQAVLAF_ 0 0 0 REV__AluSp_dup1142|chr1:32231212-32231509:+|1.8451840621425188|0.2089834518128584|3.14|481.0|18|2|anti-sense REV__AluSp_dup1142|chr1:32231212-32231509:+|1.8451840621425188|0.2089834518128584|3.14|481.0|18|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.247802734375 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 69.414 1 66.024 65.524 66.524 -3.3903 0 0 0 0.037189 1 13127 13127 58.679 14.821 1 + 48942 13024 32606 32627 48050 48050 0.01858096006139931 VGDQIIGDL 9 Unmodified _VGDQIIGDL_ 0 0 0 REV__ENSG00000156502|ENST00000359655|SUPV3L1 REV__ENSG00000156502|ENST00000359655|SUPV3L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2505798339844 2 465.250557 928.486562 0.13197 6.1398E-05 -0.025199 -1.1724E-05 0.10677 4.9675E-05 465.25041396622487 141.28 0.71574 141.28 140.96 141.67 0 31 20 2 0 0 0 0.11032 1 28100 28100 52.268 6.2474 1 7457000 + 48943 17262 32607 32628 48051 48051 0.01945774797957256 VGDQILAVD 9 Unmodified _VGDQILAVD_ 0 0 0 MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;ENST00000539508.5_1_9:13106966-13133978:-|nuORF MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.4956665039062 1 929.493838 928.486562 0.22855 0.00021243 0.16146 0.00015008 0.39001 0.00036251 929.4939840436077 146.03 0.59138 141.35 141.12 141.71 -4.6868 25 16 2 0 0 0 0.11219 1 29000 29000 51.63 3.8811 1 13920000 48944 2416 32608 32629 48052 48052 0.01945774797957256 VGDQILAVD 9 Unmodified _VGDQILAVD_ 0 0 0 MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;ENST00000539508.5_1_9:13106966-13133978:-|nuORF MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 929.493838 928.486562 0.3466 0.00032216 -0.33868 -0.0003148 0.0079121 7.3543E-06 929.4934213334415 146.63 0.57709 141.51 141.21 141.79 -5.1108 0.056826 -0.00028106 NaN 51.63 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 4559700 48945 2416 32608 32629 0.01945774797957256 VGDQILAVD 9 Unmodified _VGDQILAVD_ 0 0 0 MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;ENST00000539508.5_1_9:13106966-13133978:-|nuORF MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 929.493838 928.486562 0.45744 0.00042518 -0.15053 -0.00013991 0.30691 0.00028527 929.4935329438947 146.51 0.62505 141.51 141.16 141.78 -5 0.05462 -0.00010617 NaN 51.63 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 6197500 48946 2416 32608 32629 0.01945774797957256 VGDQLVSTT 9 Unmodified _VGDQLVSTT_ 0 0 0 REV__nc|ENSG00000204406|Q9P267|MBD5 REV__nc|ENSG00000204406|Q9P267|MBD5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24017333984375 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 66.042 1 66.042 65.542 66.542 0 0 0 0 0.23277 1 12748 12748 13.906 1.3745 1 + 48947 19532 32609 32630 48053 48053 0.0033318441828669165 VGDRGPAGPP 10 Unmodified _VGDRGPAGPP_ 0 0 0 ENSG00000204262|ENST00000374866|COL5A2;COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant ENSG00000204262|ENST00000374866|COL5A2 ENSG00000204262|ENST00000374866|COL5A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5247497558594 2 461.740691 921.466829 NaN NaN NaN NaN NaN NaN NaN 17.455 1 16.144 15.644 16.644 -1.3109 0 0 0 0.22588 1 2795 2795 5.7319 0.50118 1 48948 7568 32610 32631 48054 48054 0.002954435778519837 VGDRGSAMYHS 11 Unmodified _VGDRGSAMYHS_ 0 0 0 ENST00000513876.3_1_4:165878121-165878319:+|nuORF ENST00000513876.3_1_4:165878121-165878319:+|nuORF ENST00000513876.3_1_4:165878121-165878319:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2620239257812 2 590.264204 1178.51386 NaN NaN NaN NaN NaN NaN NaN 175.97 1 171.07 170.57 171.57 -4.9008 0 0 0 0.2367 1 35078 35078 2.9952 1.151 1 48949 10766 32611 32632 48055 48055 -0.06826064933306952 VGDRSPPLPQ 10 Unmodified _VGDRSPPLPQ_ 0 0 0 REV__ENST00000589429.5_3_19:36233501-36235273:-|nuORF REV__ENST00000589429.5_3_19:36233501-36235273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.286865234375 2 533.288005 1064.56146 NaN NaN NaN NaN NaN NaN NaN 167.18 1 162.29 161.79 162.79 -4.8916 0 0 0 0.22588 1 32842 32842 13.042 0.80181 1 + 48950 23312 32612 32633 48056 48056 0.03175957329199264 VGDRYVII 8 Unmodified _VGDRYVII_ 0 0 0 REV__PIWIL1|p.L721Ffs*9|1|0.32|ENSG00000125207|chr12:130363106-130363107|-/T|frameshift_variant REV__PIWIL1|p.L721Ffs*9|1|0.32|ENSG00000125207|chr12:130363106-130363107|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.1546630859375 3 312.183399 933.528367 -0.45267 -0.00014132 0.12059 3.7646E-05 -0.33208 -0.00010367 312.1835681391251 30 0.51825 30 29.681 30.199 0 28 14 3 0 0 0 0.88811 1 5342 5342 0.45834 0 1 1094700 + 48951 15803 32613 32634 48057 48057 0.05894375277148356 VGDRYVII 8 Unmodified _VGDRYVII_ 0 0 0 REV__PIWIL1|p.L721Ffs*9|1|0.32|ENSG00000125207|chr12:130363106-130363107|-/T|frameshift_variant REV__PIWIL1|p.L721Ffs*9|1|0.32|ENSG00000125207|chr12:130363106-130363107|-/T|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 312.183399 933.528367 -0.45267 -0.00014132 0.12059 3.7646E-05 -0.33208 -0.00010367 312.1835681391251 30 0.51825 30 29.681 30.199 0 0.11827 -0.000254 NaN 0.45834 28 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1094700 + 48952 15803 32613 32634 0.05894375277148356 VGDRYVII 8 Unmodified _VGDRYVII_ 0 0 0 REV__PIWIL1|p.L721Ffs*9|1|0.32|ENSG00000125207|chr12:130363106-130363107|-/T|frameshift_variant REV__PIWIL1|p.L721Ffs*9|1|0.32|ENSG00000125207|chr12:130363106-130363107|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 312.183399 933.528367 -0.054327 -1.696E-05 0.46886 0.00014637 0.41454 0.00012941 312.18347367447444 32.032 0.49453 29.801 29.551 30.045 -2.2305 -0.081032 7.2175E-05 NaN 0.45834 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 753730 + 48953 15803 32613 32634 0.05894375277148356 VGDRYVII 8 Unmodified _VGDRYVII_ 0 0 0 REV__PIWIL1|p.L721Ffs*9|1|0.32|ENSG00000125207|chr12:130363106-130363107|-/T|frameshift_variant REV__PIWIL1|p.L721Ffs*9|1|0.32|ENSG00000125207|chr12:130363106-130363107|-/T|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 312.183399 933.528367 -0.21393 -6.6784E-05 0.38477 0.00012012 0.17084 5.3334E-05 312.1834872557131 31.993 0.4513 29.845 29.585 30.036 -2.1483 -0.037243 -6.5857E-06 NaN 0.45834 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 579380 + 48954 15803 32613 32634 0.05894375277148356 VGDSLLEPFW 10 Unmodified _VGDSLLEPFW_ 0 0 0 ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant;MICAL3|p.R1499Gfs*106|7|0.44|ENSG00000243156|chr22:17818166-17818166|G/-|frameshift_variant;MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;nc|ENSG00000133816|O94851|MICAL2;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000133816|O94851|MICAL2 nc|ENSG00000133816|O94851|MICAL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.71240234375 3 388.197485 1161.57063 0.020435 7.9328E-06 0.063475 2.4641E-05 0.08391 3.2574E-05 388.1974750328628 49.437 0.37617 46.439 46.172 46.548 -2.999 16 10 2 0 0 0 0.89335 1 8995 8995 12.873 8.9963 1 809650 48955 12332;7870 32614 32635 48058 48058 -0.003696941051430258 VGDSLLEPFW 10 Unmodified _VGDSLLEPFW_ 0 0 0 ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant;MICAL3|p.R1499Gfs*106|7|0.44|ENSG00000243156|chr22:17818166-17818166|G/-|frameshift_variant;MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;nc|ENSG00000133816|O94851|MICAL2;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000133816|O94851|MICAL2 nc|ENSG00000133816|O94851|MICAL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7119445800781 3 388.197485 1161.57063 -0.71294 -0.00027676 1.2794 0.00049665 0.56644 0.00021989 388.1978455163154 49.351 0.49361 46.344 46.106 46.599 -3.0068 18 13 2 0 0 0 0.89335 1 9017 9017 12.873 4.9272 1 739760 48956 12332;7870 32614 32635 48059 48059 -0.003696941051430258 VGDSLLEPFW 10 Unmodified _VGDSLLEPFW_ 0 0 0 ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant;MICAL3|p.R1499Gfs*106|7|0.44|ENSG00000243156|chr22:17818166-17818166|G/-|frameshift_variant;MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;nc|ENSG00000133816|O94851|MICAL2;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000133816|O94851|MICAL2 nc|ENSG00000133816|O94851|MICAL2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 388.197485 1161.57063 -0.3206 -0.00012446 1.6069 0.00062381 1.2863 0.00049936 388.1980988449952 49.197 0.49331 46.316 46.166 46.66 -2.8811 -0.11436 0.00089951 NaN 17.443 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 499560 48957 12332;7870 32614 32635 -0.003696941051430258 VGDTFSEEY 9 Unmodified _VGDTFSEEY_ 0 0 0 ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENST00000473051.1_1_10:74095570-74096546:-|nuORF ENST00000473051.1_1_10:74095570-74096546:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.690673828125 2 523.719287 1045.42402 NaN NaN NaN NaN NaN NaN NaN 116.61 1 112.25 111.75 112.75 -4.3585 0 0 0 0.19656 1 22449 22449 0.40827 0.14288 1 48958 4758 32615 32636 48060 48060 -0.09687416060887699 VGDTGMEGP 9 Unmodified _VGDTGMEGP_ 0 0 0 COL17A1|p.P614T|1|0.29|ENSG00000065618|chr10:104053130-104053130|G/T|missense_variant COL17A1|p.P614T|1|0.29|ENSG00000065618|chr10:104053130-104053130|G/T|missense_variant COL17A1|p.P614T|1|0.29|ENSG00000065618|chr10:104053130-104053130|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.0927734375 2 431.684193 861.353833 0.29927 0.00012919 1.1111 0.00047964 1.4104 0.00060883 431.68622985625274 68.471 1.3532 64.935 64.623 65.976 -3.5362 128 37 4 0 0 0 0.87258 1 12825 12825 7.9102 6.2575 1 48205000 48959 616 32616 32637 48061 48061 -0.08238992930341738 VGDTQVVVF 9 Unmodified _VGDTQVVVF_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF;nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7694396972656 2 482.260925 962.507297 0.019956 9.6242E-06 0.3731 0.00017993 0.39305 0.00018955 482.2609120948566 126.56 0.98601 126.56 126.07 127.06 0 54 27 3 0 0 0 0.13686 1 24934 24934 61.357 32.871 1 6505700 48960 5083 32617 32638 48062 48062 0.024543651776298248 VGDTQVVVF 9 Unmodified _VGDTQVVVF_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF;nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 482.260925 962.507297 0.079039 3.8117E-05 0.098062 4.7291E-05 0.1771 8.5409E-05 482.26087099560976 131.46 0.92499 126.61 126.19 127.11 -4.8527 0.00073027 -7.3863E-05 NaN 71.134 60 26 3 NaN NaN NaN NaN 0 NaN NaN 0 7997700 48961 5083 32617 32638 0.024543651776298248 VGDTQVVVF 9 Unmodified _VGDTQVVVF_ 0 0 0 nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF;nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-2|CCT8 nc|ENSG00000156261|P50990-2|CCT8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 482.260925 962.507297 0.089514 4.3169E-05 0.1335 6.4381E-05 0.22301 0.00010755 482.26092089291694 131.43 0.99088 126.66 126.12 127.11 -4.7725 0.04424 -3.9685E-05 NaN 71.134 61 27 3 NaN NaN NaN NaN 0 NaN NaN 0 7576800 48962 5083 32617 32638 0.024543651776298248 VGDTRKPSW 9 Unmodified _VGDTRKPSW_ 0 0 0 ENST00000361786.6_1_14:77580830-77581103:+|nuORF ENST00000361786.6_1_14:77580830-77581103:+|nuORF ENST00000361786.6_1_14:77580830-77581103:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6829223632812 2 523.274898 1044.53524 0.097742 5.1146E-05 -1.8054 -0.00094474 -1.7077 -0.00089359 523.2741441154838 119.01 0.92139 114.51 114.15 115.07 -4.502 42 25 2 0 0 0 0.62102 1 23549 23549 11.64 3.047 1 1864900 48963 9036 32618 32639 48063 48063 0.014756881576886371 VGDVDSHEFAQ 11 Unmodified _VGDVDSHEFAQ_ 0 0 0 REV__ENSG00000165757|ENST00000375377|JCAD REV__ENSG00000165757|ENST00000375377|JCAD MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2854614257812 2 602.267467 1202.52038 NaN NaN NaN NaN NaN NaN NaN 124.06 1 119.46 118.96 119.96 -4.5926 0 0 0 0.22632 1 23875 23875 0.00056442 0 1 + 48964 17800 32619 32640 48064 48064 -0.07277848500939399 VGDVKQMP 8 Unmodified _VGDVKQMP_ 0 0 0 REV__ENSG00000080298|ENST00000617270|RFX3 REV__ENSG00000080298|ENST00000617270|RFX3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2174072265625 2 437.228571 872.442588 NaN NaN NaN NaN NaN NaN NaN 66.79 1 63.293 62.793 63.793 -3.4965 0 0 0 0.21486 1 12523 12523 5.7604 0 1 + 48965 14407 32620 32641 48065 48065 0.0012646709998307415 VGDVLPGP 8 Unmodified _VGDVLPGP_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3;SIPA1L3|p.E186Gfs*34|1|0.53|ENSG00000105738|chr19:38082118-38082127|GGGGAGCCGC/-|frameshift_variant ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.1910095214844 2 377.210704 752.406855 NaN NaN NaN NaN NaN NaN NaN 18.764 1 17.453 16.953 17.953 -1.3109 0 0 0 0.2396 1 3065 3065 0 0 1 48966 2339 32621 32642 48066 48066 0.02074752914631972 VGDVTGAQAY 10 Unmodified _VGDVTGAQAY_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2641906738281 2 490.737814 979.461075 0.49095 0.00024093 0.3058 0.00015007 0.79675 0.000391 490.73824629853425 48.364 0.95061 48.364 47.929 48.88 0 46 26 2 0 0 0 0.053382 1 9158 9158 85.642 24.284 1 8817500 48967 4405 32622 32643 48067 48067 -0.02947699724472841 VGDVTGAQAY 10 Unmodified _VGDVTGAQAY_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26434326171875 2 490.737814 979.461075 -0.063791 -3.1304E-05 0.019397 9.5188E-06 -0.044394 -2.1786E-05 490.7378645546119 51.552 0.89052 48.67 48.28 49.17 -2.8824 82 25 4 0 0 0 0.21204 1 9823 9823 82.529 26.352 1 17288000 48968 4405 32622 32643 48068 48068 -0.02947699724472841 VGDVTGAQAY 10 Unmodified _VGDVTGAQAY_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2558288574219 2 490.737814 979.461075 0.12463 6.1159E-05 -0.11629 -5.7069E-05 0.008334 4.0898E-06 490.73781462814895 51.87 0.97914 48.825 48.297 49.277 -3.0453 79 27 4 0 0 0 0.017853 1 9515 9515 126.57 75.711 1 15096000 48969 4405 32622 32643 48069 48069 -0.02947699724472841 VGDVTGAQAY 10 Unmodified _VGDVTGAQAY_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2644958496094 2 490.737814 979.461075 -0.29333 -0.00014395 0.23424 0.00011495 -0.059092 -2.8999E-05 490.73802332988606 51.79 0.96718 48.739 48.206 49.173 -3.0517 79 27 4 0 0 0 0.017853 1 9541 9541 114.65 52.076 1 9954900 48970 4405 32622 32643 48070 48070 -0.02947699724472841 VGDWPVDK 8 Unmodified _VGDWPVDK_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2;N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant;N4BP2|p.S1460Ifs*17|1|0.33|ENSG00000078177|chr4:40126175-40126176|-/A|frameshift_variant;N4BP2|p.T796I|1|0.66|ENSG00000078177|chr4:40120498-40120498|C/T|missense_variant nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2320861816406 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 51.182 1 51.182 50.682 51.682 0 0 0 0 0.23487 1 9703 9703 0.62683 0 1 48971 1572 32623 32644 48071 48071 -0.010864770279567892 VGDWTERF 8 Unmodified _VGDWTERF_ 0 0 0 nc|ENSG00000086991|Q9NPH5-3|NOX4;nc|ENSG00000086991|Q9NPH5-4|NOX4;nc|ENSG00000086991|Q9NPH5-2|NOX4;nc|ENSG00000086991|Q9NPH5-9|NOX4;nc|ENSG00000086991|Q9NPH5-6|NOX4;nc|ENSG00000086991|Q9NPH5-8|NOX4;ENSG00000086991|ENST00000263317|NOX4 nc|ENSG00000086991|Q9NPH5-3|NOX4 nc|ENSG00000086991|Q9NPH5-3|NOX4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.1500549316406 3 337.162775 1008.46649 NaN NaN NaN NaN NaN NaN NaN 81.877 1 78.32 77.82 78.82 -3.557 0 0 0 0.21486 1 15998 15998 1.8442 0 1 48972 1703 32624 32645 48072 48072 -0.03739976141991974 VGDYRHRR 8 Unmodified _VGDYRHRR_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.1722717285156 3 353.524929 1057.55296 -0.72867 -0.0002576 -0.3889 -0.00013749 -1.1176 -0.00039509 353.5247310658703 43.31 1.1172 40.704 40.315 41.433 -2.606 51 31 2 0 0 0 0.80867 1 7756 7756 3.9444 0.66309 1 3030300 48973 4958 32625 32646 48073 48073 0.026484482032174128 VGDYRHRR 8 Unmodified _VGDYRHRR_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 353.524929 1057.55296 -0.10682 -3.7762E-05 -1.161 -0.00041043 -1.2678 -0.00044819 353.5245046139961 40.774 0.87786 40.774 40.462 41.34 0 0.033518 -0.0003095 NaN 3.9444 41 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1999700 48974 4958 32625 32646 0.026484482032174128 VGDYRHRR 8 Unmodified _VGDYRHRR_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 353.524929 1057.55296 -0.35332 -0.00012491 -0.78789 -0.00027854 -1.1412 -0.00040345 353.5246246941239 43.662 0.95444 40.872 40.337 41.291 -2.79 0.13089 8.6173E-05 NaN 3.9444 56 26 3 NaN NaN NaN NaN 0 NaN NaN 0 2796800 48975 4958 32625 32646 0.026484482032174128 VGDYRHRR 8 Unmodified _VGDYRHRR_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 353.524929 1057.55296 -0.041226 -1.4575E-05 -1.239 -0.00043801 -1.2802 -0.00045258 353.5244352405881 43.379 1.1057 40.613 40.146 41.252 -2.7661 -0.12777 -0.00039223 NaN 3.9444 49 30 2 NaN NaN NaN NaN 0 NaN NaN 0 2701200 48976 4958 32625 32646 0.026484482032174128 VGDYVLRSA 9 Unmodified _VGDYVLRSA_ 0 0 0 REV__nc|ENSG00000066032|P26232-4|CTNNA2 REV__nc|ENSG00000066032|P26232-4|CTNNA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2642517089844 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 54.466 1 54.466 53.966 54.966 0 0 0 0 0.19684 1 10386 10386 0.073264 0 1 + 48977 14198 32626 32647 48074 48074 0.023328834091330464 VGDYWSTI 8 Unmodified _VGDYWSTI_ 0 0 0 REV__ENST00000511535.1_1_4:5823489-5889136:-|nuORF REV__ENST00000511535.1_1_4:5823489-5889136:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.15118408203125 3 314.151876 939.433798 NaN NaN NaN NaN NaN NaN NaN 147.19 1 142.08 141.58 142.58 -5.1108 0 0 0 0.21486 1 28479 28479 1.6526 0 1 + 48978 14294 32627 32648 48075 48075 -0.03834183264859803 VGEDGCASPP 10 Unmodified _VGEDGCASPP_ 0 0 0 REV__ENST00000455566.1_10:133770616-133770739:+|nuORF REV__ENST00000455566.1_10:133770616-133770739:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2050476074219 3 311.132375 930.375297 NaN NaN NaN NaN NaN NaN NaN 46.185 1 43.344 42.844 43.844 -2.8409 0 0 0 0.22588 1 8714 8714 0.77653 0.31819 1 + 48979 21846 32628 32649 48076 48076 -0.09267607901631436 VGEDPDVA 8 Unmodified _VGEDPDVA_ 0 0 0 REV__ENSG00000196159|ENST00000394329|FAT4;REV__FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant REV__ENSG00000196159|ENST00000394329|FAT4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 401.17816162109375 2 401.184883 800.355213 NaN NaN NaN NaN NaN NaN NaN 179.54 1 174.67 174.17 175.17 -4.868 0 0 0 0.21486 1 35772 35772 2.5775 0.27475 1 + 48980 19222;23527 32629 32650 48077 48077 -0.05295035569952233 VGEDYTLVVA 10 Unmodified _VGEDYTLVVA_ 0 0 0 REV__ENST00000554912.1_1_14:100762042-100762387:-|nuORF REV__ENST00000554912.1_1_14:100762042-100762387:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2784423828125 2 533.276772 1064.53899 NaN NaN NaN NaN NaN NaN NaN 166.12 1 166.12 165.62 166.62 0 0 0 0 2.8426 1 33798 33798 0.51642 0.10815 1 + 48981 22979 32630 32651 48078 48078 0.009303131409296839 VGEEDEEDEE 10 Unmodified _VGEEDEEDEE_ 0 0 0 ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.27001953125 2 590.21222 1178.40989 NaN NaN NaN NaN NaN NaN NaN 110.75 1 106.33 105.83 106.83 -4.4231 0 0 0 2.8426 1 21819 21819 0 0 1 48982 6856 32631 32652 48079 48079 -0.17218158070500067 VGEEEDNDNED 11 Unmodified _VGEEEDNDNED_ 0 0 0 ENST00000438766.1_1_2:139654799-139654901:+|nuORF ENST00000438766.1_1_2:139654799-139654901:+|nuORF ENST00000438766.1_1_2:139654799-139654901:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.154541015625 4 316.866651 1263.4375 -2.2934 -0.00072671 -1.4692 -0.00046553 -3.7626 -0.0011922 316.8664901180365 10.495 2.2087 9.4287 8.7769 10.986 -1.0664 97 63 2 0 0 0 0.82662 1 1393 1393 0.094841 0.094841 1 597490 48983 9863 32632 32653 48080 48080 -0.18368254810275175 VGEEGCQGDP 10 Unmodified _VGEEGCQGDP_ 0 0 0 ENST00000574167.1_1_17:4443199-4445180:-|nuORF ENST00000574167.1_1_17:4443199-4445180:-|nuORF ENST00000574167.1_1_17:4443199-4445180:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 330.22662353515625 3 330.799285 989.376025 -0.3032 -0.0001003 0.8083 0.00026738 0.5051 0.00016709 330.79952258426334 76.748 0.65585 73.333 72.97 73.626 -3.4151 41 18 3 0 0 0 0.91149 1 14997 14997 0.13989 0 1 3133200 48984 11443 32633 32654 48081 48081 -0.11908813252591699 VGEEPRPP 8 Unmodified _VGEEPRPP_ 0 0 0 REV__ENST00000370557.5_1_X:139014736-139014982:-|nuORF REV__ENST00000370557.5_1_X:139014736-139014982:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 441.22247314453125 2 440.729792 879.445031 -0.018814 -8.292E-06 0.077395 3.411E-05 0.058581 2.5818E-05 440.7298118349513 59.66 1.186 56.437 55.843 57.029 -3.2237 82 33 3 0 0 0 0.87562 1 11255 11255 0.25148 0.12366 1 7520900 + 48985 20986 32634 32655 48082 48082 0.000486388292756601 VGEEPRPP 8 Unmodified _VGEEPRPP_ 0 0 0 REV__ENST00000370557.5_1_X:139014736-139014982:-|nuORF REV__ENST00000370557.5_1_X:139014736-139014982:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 440.729792 879.445031 0.043809 1.9308E-05 -0.05237 -2.3081E-05 -0.0085616 -3.7733E-06 440.7297693450342 59.72 1.1276 56.406 55.816 56.943 -3.3139 -0.015054 -6.05E-05 NaN 0.25148 71 31 3 NaN NaN NaN NaN 0 NaN NaN 0 7005700 + 48986 20986 32634 32655 0.000486388292756601 VGEEPWTC 8 Unmodified _VGEEPWTC_ 0 0 0 REV__ENST00000469442.5_1_2:86014618-86015164:+|nuORF REV__ENST00000469442.5_1_2:86014618-86015164:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 306.9325256347656 3 307.465466 919.374568 -0.42131 -0.00012954 -0.59894 -0.00018415 -1.0202 -0.00031369 307.4649166684096 26.068 0.82592 26.068 25.74 26.566 0 68 23 4 0 0 0 1.028 1 4628 4628 0.45834 0 1 2803800 + 48987 22012 32635 32656 48083 48083 -0.0883440255070127 VGEEPWTC 8 Unmodified _VGEEPWTC_ 0 0 0 REV__ENST00000469442.5_1_2:86014618-86015164:+|nuORF REV__ENST00000469442.5_1_2:86014618-86015164:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 307.465466 919.374568 0.57999 0.00017833 -1.3182 -0.0004053 -0.7382 -0.00022697 307.4647849658886 27.93 0.25035 25.974 25.874 26.124 -1.9561 -0.022403 0.00022298 NaN 0.45834 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 171100 + 48988 22012 32635 32656 -0.0883440255070127 VGEEPWTC 8 Unmodified _VGEEPWTC_ 0 0 0 REV__ENST00000469442.5_1_2:86014618-86015164:+|nuORF REV__ENST00000469442.5_1_2:86014618-86015164:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 307.465466 919.374568 0.23412 7.1985E-05 -2.034 -0.00062538 -1.7998 -0.00055339 307.4648032409901 27.702 0.63311 25.947 25.685 26.318 -1.7552 -0.04918 -0.00043726 NaN 0.45834 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 793090 + 48989 22012 32635 32656 -0.0883440255070127 VGEFCMYD 8 Unmodified _VGEFCMYD_ 0 0 0 REV__ENSG00000068654|ENST00000263857|POLR1A REV__ENSG00000068654|ENST00000263857|POLR1A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7745666503906 2 482.182971 962.35139 NaN NaN NaN NaN NaN NaN NaN 150.8 1 150.8 150.3 151.3 0 0 0 0 0.2396 1 30194 30194 0 0 1 + 48990 14230 32636 32657 48084 48084 -0.13129164659676462 VGEIEHWK 8 Unmodified _VGEIEHWK_ 0 0 0 REV__tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1 REV__tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.18023681640625 3 333.174903 996.50288 NaN NaN NaN NaN NaN NaN NaN 107.79 1 103.38 102.88 103.88 -4.4121 0 0 0 0.21486 1 20680 20680 1.8442 0.36234 1 + 48991 25400 32637 32658 48085 48085 0.0044890075471357704 VGEKKKTK 8 Unmodified _VGEKKKTK_ 0 0 0 REV__MYL5|p.G12Vfs*44|1|0.27|ENSG00000215375|chr4:678685-678685|G/-|frameshift_variant REV__MYL5|p.G12Vfs*44|1|0.27|ENSG00000215375|chr4:678685-678685|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 306.52978515625 3 306.530798 916.570566 NaN NaN NaN NaN NaN NaN NaN 34.089 1 31.943 31.443 32.443 -2.1468 0 0 0 0.2396 1 5969 5969 0 0 1 + 48992 23899 32638 32659 48086 48086 0.10894350685509835 VGEKNCTGP 9 Unmodified _VGEKNCTGP_ 0 0 0 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 302.0399475097656 3 302.144615 903.412016 NaN NaN NaN NaN NaN NaN NaN 34.872 1 32.478 31.978 32.978 -2.3938 0 0 0 0.23508 1 6413 6413 1.1933 0.12188 1 48993 7406 32639 32660 48087 48087 -0.04355311285087282 VGEKNCTGP 9 Unmodified _VGEKNCTGP_ 0 0 0 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.0517578125 3 302.144615 903.412016 NaN NaN NaN NaN NaN NaN NaN 59.931 1 56.707 56.207 57.207 -3.2237 0 0 0 0.23508 1 11203 11203 1.1933 0.12188 1 48994 7406 32639 32660 48088 48088 -0.04355311285087282 VGELEFDE 8 Unmodified _VGELEFDE_ 0 0 0 REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.1617431640625 3 313.143157 936.407643 NaN NaN NaN NaN NaN NaN NaN 27.806 1 27.806 27.306 28.306 0 0 0 0 0.21486 1 4918 4918 0.45834 0 1 + 48995 16584 32640 32661 48089 48089 -0.06310497226991174 VGELEFDE 8 Unmodified _VGELEFDE_ 0 0 0 REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.1332702636719 3 313.143157 936.407643 NaN NaN NaN NaN NaN NaN NaN 27.868 1 27.868 27.368 28.368 0 0 0 0 0.21486 1 4931 4931 0.45834 0 1 + 48996 16584 32640 32661 48090 48090 -0.06310497226991174 VGELEFDE 8 Unmodified _VGELEFDE_ 0 0 0 REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1498718261719 3 313.143157 936.407643 NaN NaN NaN NaN NaN NaN NaN 17.686 1 16.171 15.671 16.671 -1.5148 0 0 0 0.21486 1 2582 2582 0.45834 0 1 + 48997 16584 32640 32661 48091 48091 -0.06310497226991174 VGELGYRF 8 Unmodified _VGELGYRF_ 0 0 0 ENST00000233809.8_2_2:217528903-217529134:+|nuORF ENST00000233809.8_2_2:217528903-217529134:+|nuORF ENST00000233809.8_2_2:217528903-217529134:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1593933105469 3 314.167749 939.481417 NaN NaN NaN NaN NaN NaN NaN 85.552 1 85.552 85.052 86.052 0 0 0 0 0.21486 1 16697 16697 1.8442 0 1 48998 8163 32641 32662 48092 48092 0.009255157259985936 VGELIQRTY 9 Unmodified _VGELIQRTY_ 0 0 0 REV__ENSG00000169967|ENST00000682094|MAP3K2 REV__ENSG00000169967|ENST00000682094|MAP3K2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2018127441406 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 88.428 1 84.433 83.933 84.933 -3.9953 0 0 0 0.23508 1 16844 16844 7.1017 0.37856 1 48999 18133 32642 32663 48093 48093 0.0461712798901317 VGELIQRTY 9 Unmodified _VGELIQRTY_ 0 0 0 REV__ENSG00000169967|ENST00000682094|MAP3K2 REV__ENSG00000169967|ENST00000682094|MAP3K2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 88.119 1 84.368 83.868 84.868 -3.7501 0 0 0 0.23508 1 16864 16864 7.1017 0.37856 1 49000 18133 32642 32663 48094 48094 0.0461712798901317 VGELQKEK 8 Unmodified _VGELQKEK_ 0 0 0 tr|U7SUY6|U7SUY6_FUSNUCobalt/nickeltransportproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01052PE=4SV=1 tr|U7SUY6|U7SUY6_FUSNUCobalt/nickeltransportproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01052PE=4SV=1 tr|U7SUY6|U7SUY6_FUSNUCobalt/nickeltransportproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01052PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.1977844238281 3 310.846675 929.518196 -0.58398 -0.00018153 0.65796 0.00020452 0.073981 2.2997E-05 310.84681698175484 15.382 0.37915 15.382 15.193 15.572 0 25 10 4 0 0 0 0.88811 1 2312 2312 0.45834 0 1 5088400 49001 26217 32643 32664 48095 48095 0.05061767551910634 VGELQKEK 8 Unmodified _VGELQKEK_ 0 0 0 tr|U7SUY6|U7SUY6_FUSNUCobalt/nickeltransportproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01052PE=4SV=1 tr|U7SUY6|U7SUY6_FUSNUCobalt/nickeltransportproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01052PE=4SV=1 tr|U7SUY6|U7SUY6_FUSNUCobalt/nickeltransportproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01052PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 310.846675 929.518196 -0.69024 -0.00021456 0.61499 0.00019117 -0.075247 -2.339E-05 310.8468609550403 16.349 0.34576 15.133 14.974 15.32 -1.2159 -0.086512 3.467E-05 NaN 0.45834 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2294500 49002 26217 32643 32664 0.05061767551910634 VGELQKEK 8 Unmodified _VGELQKEK_ 0 0 0 tr|U7SUY6|U7SUY6_FUSNUCobalt/nickeltransportproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01052PE=4SV=1 tr|U7SUY6|U7SUY6_FUSNUCobalt/nickeltransportproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01052PE=4SV=1 tr|U7SUY6|U7SUY6_FUSNUCobalt/nickeltransportproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01052PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 310.846675 929.518196 -0.50873 -0.00015814 0.44423 0.00013809 -0.064507 -2.0052E-05 310.84677356064884 16.366 0.23765 15.144 15.058 15.296 -1.2219 -0.075791 -0.00012457 NaN 0.45834 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 877490 49003 26217 32643 32664 0.05061767551910634 VGELSDKSKLQ 11 Unmodified _VGELSDKSKLQ_ 0 0 0 CD209|p.E93D|1|0.39|ENSG00000090659|chr19:7745987-7745987|C/A|missense_variant CD209|p.E93D|1|0.39|ENSG00000090659|chr19:7745987-7745987|C/A|missense_variant CD209|p.E93D|1|0.39|ENSG00000090659|chr19:7745987-7745987|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2957153320312 2 602.33261 1202.65067 NaN NaN NaN NaN NaN NaN NaN 125.11 1 120.51 120.01 121.01 -4.5984 0 0 0 0.22632 1 24669 24669 0.00056442 0 1 49004 443 32644 32665 48096 48096 0.057447474980335755 VGELTTQNT 9 Unmodified _VGELTTQNT_ 0 0 0 ENST00000466000.1_1_7:133694942-133749278:+|nuORF;ENSG00000131558|ENST00000253861|EXOC4 ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENST00000466000.1_1_7:133694942-133749278:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7716979980469 2 481.743096 961.47164 NaN NaN NaN NaN NaN NaN NaN 28.878 1 27.123 26.623 27.623 -1.7552 0 0 0 0.19698 1 4892 4892 1.2148 0 1 49005 3683 32645 32666 48097 48097 -0.010637170700420029 VGELYYKQWT 10 Unmodified _VGELYYKQWT_ 0 0 0 REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.8892822265625 4 322.415849 1285.63429 -0.50351 -0.00016234 -0.22576 -7.2789E-05 -0.72927 -0.00023513 322.41579946357314 19.712 0.51372 19.712 19.45 19.963 0 43 14 4 0 0 0 0.91149 1 3196 3196 0.15932 0.15932 1 10300000 + 49006 17246 32646 32667 48098 48098 0.002896663319461368 VGELYYKQWT 10 Unmodified _VGELYYKQWT_ 0 0 0 REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 322.415849 1285.63429 0.16902 5.4493E-05 -0.86995 -0.00028049 -0.70094 -0.00022599 322.4156205949421 21.299 0.45758 19.825 19.632 20.089 -1.4742 0.042265 -0.00041744 NaN 0.15932 41 12 5 NaN NaN NaN NaN 0 NaN NaN 0 6740100 + 49007 17246 32646 32667 0.002896663319461368 VGELYYKQWT 10 Unmodified _VGELYYKQWT_ 0 0 0 REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant REV__KCNMA1|p.K692Nfs*15|2|0.26|ENSG00000156113|chr10:77011983-77011983|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 322.415849 1285.63429 -0.19479 -6.2805E-05 -0.53919 -0.00017384 -0.73399 -0.00023665 322.4156950250125 21.194 0.45831 19.81 19.578 20.036 -1.3847 0.027559 9.1327E-06 NaN 0.15932 43 12 5 NaN NaN NaN NaN 0 NaN NaN 0 10898000 + 49008 17246 32646 32667 0.002896663319461368 VGEMLFLAW 9 Unmodified _VGEMLFLAW_ 0 0 0 TRIM13|p.E122Sfs*54|1|0.17|ENSG00000204977|chr13:50012301-50012301|G/-|frameshift_variant TRIM13|p.E122Sfs*54|1|0.17|ENSG00000204977|chr13:50012301-50012301|G/-|frameshift_variant TRIM13|p.E122Sfs*54|1|0.17|ENSG00000204977|chr13:50012301-50012301|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2776489257812 2 533.275521 1064.53649 NaN NaN NaN NaN NaN NaN NaN 148 1 142.94 142.44 143.44 -5.0595 0 0 0 0.1966 1 28662 28662 0.40827 0.37898 1 49009 26517 32647 32668 48099 48099 0.006801862022484784 VGEMSSSC 8 Unmodified _VGEMSSSC_ 0 0 0 REV__ENSG00000102699|ENST00000381989|PARP4 REV__ENSG00000102699|ENST00000381989|PARP4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 400.1529846191406 2 400.151671 798.28879 NaN NaN NaN NaN NaN NaN NaN 54.958 1 51.822 51.322 52.322 -3.1352 0 0 0 0.21486 1 10148 10148 4.756 2.4533 1 + 49010 14845 32648 32669 48100 48100 -0.1184231072785451 VGENFRFW 8 Unmodified _VGENFRFW_ 0 0 0 REV__ENST00000498439.1_1_16:846687-847972:+|nuORF REV__ENST00000498439.1_1_16:846687-847972:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 352.1745910644531 3 352.175015 1053.50321 NaN NaN NaN NaN NaN NaN NaN 114.19 1 109.63 109.13 110.13 -4.555 0 0 0 0.21486 1 21924 21924 1.8442 1.0677 1 + 49011 15893 32649 32670 48101 48101 -0.02139679525430438 VGENFRFW 8 Unmodified _VGENFRFW_ 0 0 0 REV__ENST00000498439.1_1_16:846687-847972:+|nuORF REV__ENST00000498439.1_1_16:846687-847972:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 352.1748962402344 3 352.175015 1053.50321 NaN NaN NaN NaN NaN NaN NaN 95.456 1 91.575 91.075 92.075 -3.881 0 0 0 0.21486 1 18315 18315 1.8442 0.19162 1 + 49012 15893 32649 32670 48102 48102 -0.02139679525430438 VGENNWLHL 9 Unmodified _VGENNWLHL_ 0 0 0 REV__ENST00000563328.4_1_16:72821533-72822025:+|nuORF REV__ENST00000563328.4_1_16:72821533-72822025:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2766723632812 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 146.59 1 141.59 141.09 142.09 -5 0 0 0 0.23508 1 28370 28370 7.9102 0 1 + 49013 23077 32650 32671 48103 48103 -0.0018031184229130304 VGEPGLGH 8 Unmodified _VGEPGLGH_ 0 0 0 ENST00000526084.1_1_11:7693541-7694179:-|nuORF ENST00000526084.1_1_11:7693541-7694179:-|nuORF ENST00000526084.1_1_11:7693541-7694179:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.19866943359375 2 383.198128 764.381703 NaN NaN NaN NaN NaN NaN NaN 68.921 1 65.531 65.031 66.031 -3.3903 0 0 0 0.21486 1 13024 13024 2.8892 0 1 49014 10909 32651 32672 48104 48104 -0.009913018879501578 VGEPLAELFTK 11 Unmodified _VGEPLAELFTK_ 0 0 0 REV__nc|ENSG00000003400|Q92851-7|CASP10 REV__nc|ENSG00000003400|Q92851-7|CASP10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2838745117188 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 158.76 1 153.49 152.99 153.99 -5.2748 0 0 0 0.22632 1 30816 30816 0.00056442 0 1 + 49015 23923 32652 32673 48105 48105 0.06146836991752025 VGERCLVRLTV 11 Unmodified _VGERCLVRLTV_ 0 0 0 REV__IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant REV__IL2RB|p.P489Lfs*43|1|0.23|ENSG00000100385|chr22:37128286-37128286|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7618408203125 2 622.860815 1243.70708 NaN NaN NaN NaN NaN NaN NaN 70.93 1 67.35 66.85 67.85 -3.5798 0 0 0 0.22632 1 13374 13374 0.00056442 0 1 + 49016 14706 32653 32674 48106 48106 0.0949709685369271 VGERLHRSLL 10 Unmodified _VGERLHRSLL_ 0 0 0 ENST00000470003.5_1_16:58549747-58550349:+|nuORF ENST00000470003.5_1_16:58549747-58550349:+|nuORF ENST00000470003.5_1_16:58549747-58550349:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2706909179688 2 590.351471 1178.68839 NaN NaN NaN NaN NaN NaN NaN 122.01 1 122.01 121.51 122.51 0 0 0 0 2.8426 1 24053 24053 0.0013812 0 1 49017 10192 32654 32675 48107 48107 0.10619303274188496 VGESDASG 8 Unmodified _VGESDASG_ 0 0 0 REV__ENSG00000102109|ENST00000218230|PCSK1N REV__ENSG00000102109|ENST00000218230|PCSK1N MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1353759765625 2 361.153583 720.292613 NaN NaN NaN NaN NaN NaN NaN 79.876 1 76.366 75.866 76.866 -3.5102 0 0 0 0.21486 1 15599 15599 2.5775 0 1 + 49018 14822 32655 32676 48108 48108 -0.07872181638140319 VGESEGLLSA 10 Unmodified _VGESEGLLSA_ 0 0 0 REV__ENST00000548550.1_1_12:57921370-57921460:+|nuORF REV__ENST00000548550.1_1_12:57921370-57921460:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24505615234375 2 481.245472 960.476391 0.40697 0.00019585 -1.5246 -0.0007337 -1.1176 -0.00053785 481.24470624170857 69.919 0.62644 66.339 66.141 66.768 -3.5798 30 17 3 0 0 0 0.372 1 13206 13206 6.6304 6.114 1 2048800 + 49019 22910 32656 32677 48109 48109 -0.005428329272831434 VGESGKGCH 9 Unmodified _VGESGKGCH_ 0 0 0 HSPG2|p.P3071Hfs*100|1|0.06|ENSG00000142798|chr1:21841639-21841655|GATGATGGAGCCATTGG/-|frameshift_variant HSPG2|p.P3071Hfs*100|1|0.06|ENSG00000142798|chr1:21841639-21841655|GATGATGGAGCCATTGG/-|frameshift_variant HSPG2|p.P3071Hfs*100|1|0.06|ENSG00000142798|chr1:21841639-21841655|GATGATGGAGCCATTGG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2301025390625 2 437.197802 872.381051 NaN NaN NaN NaN NaN NaN NaN 25.424 1 23.775 23.275 24.275 -1.6482 0 0 0 0.19632 1 4459 4459 0.073264 0.073264 1 49020 11924 32657 32678 48110 48110 -0.0602446459931798 VGESQPKE 8 Unmodified _VGESQPKE_ 0 0 0 REV__ENST00000229243.6_2_12:6747544-6748168:-|nuORF REV__ENST00000229243.6_2_12:6747544-6748168:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2193603515625 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 40.416 1 37.781 37.281 38.281 -2.6348 0 0 0 0.23107 1 7532 7532 3.5871 2.9602 1 + 49021 20059 32658 32679 48111 48111 -0.017353712702401936 VGESQWHS 8 Unmodified _VGESQWHS_ 0 0 0 REV__nc|ENSG00000007541|Q9BRB3-3|PIGQ REV__nc|ENSG00000007541|Q9BRB3-3|PIGQ MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2498779296875 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 100.46 1 100.46 99.962 100.96 0 0 0 0 0.23366 1 19712 19712 0.12286 0.058877 1 + 49022 13891 32659 32680 48112 48112 -0.06317122210191428 VGESQWHS 8 Unmodified _VGESQWHS_ 0 0 0 REV__nc|ENSG00000007541|Q9BRB3-3|PIGQ REV__nc|ENSG00000007541|Q9BRB3-3|PIGQ MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2490539550781 2 465.209224 928.403895 NaN NaN NaN NaN NaN NaN NaN 100.71 1 100.71 100.21 101.21 0 0 0 0 0.23366 1 19759 19759 0.12286 0 1 + 49023 13891 32659 32680 48113 48113 -0.06317122210191428 VGETCVCT 8 Unmodified _VGETCVCT_ 0 0 0 REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3660888671875 1 811.332452 810.325175 0.73256 0.00059435 2.4476 0.0019858 3.1802 0.0025802 811.334141433189 176.56 0.13492 171.77 171.69 171.82 -4.7898 5 3 2 0 0 0 0.77935 1 36109 36109 5.2307 0 1 2329400 + 49024 14755 32660 32681 48114 48114 -0.08757433831146955 VGETCVCT 8 Unmodified _VGETCVCT_ 0 0 0 REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 811.332452 810.325175 0.42774 0.00034704 2.1454 0.0017406 2.5731 0.0020876 811.3341334722185 176.6 0.13553 171.73 171.65 171.78 -4.8739 -0.020847 -5.0922E-05 NaN 5.2307 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 11475000 + 49025 14755 32660 32681 -0.08757433831146955 VGETGKIA 8 Unmodified _VGETGKIA_ 0 0 0 REV__tr|U7T4H2|U7T4H2_FUSNUC-typelysozymeinhibitordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00338PE=4SV=1 REV__tr|U7T4H2|U7T4H2_FUSNUC-typelysozymeinhibitordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00338PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7223815917969 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 102.71 1 98.526 98.026 99.026 -4.1861 0 0 0 0.21486 1 20191 20191 5.7604 3.1829 1 + 49026 25392 32661 32682 48115 48115 0.03254137943315527 VGETLGALN 9 Unmodified _VGETLGALN_ 0 0 0 ENST00000460505.5_1_3:49053470-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-2|DALRD3;ENSG00000178149|ENST00000341949|DALRD3;nc|ENSG00000178149|Q5D0E6-3|DALRD3;ENST00000498794.1_1_3:49055454-49055997:-|nuORF;ENST00000484831.5_1_3:49054806-49055997:-|nuORF ENST00000460505.5_1_3:49053470-49055997:-|nuORF ENST00000460505.5_1_3:49053470-49055997:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21563720703125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 61.202 1 61.202 60.702 61.702 0 0 0 0 0.020396 1 11742 11742 67.344 16.489 1 49027 6559 32662 32683 48116 48116 0.01901505626483413 VGETLGALN 9 Unmodified _VGETLGALN_ 0 0 0 ENST00000460505.5_1_3:49053470-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-2|DALRD3;ENSG00000178149|ENST00000341949|DALRD3;nc|ENSG00000178149|Q5D0E6-3|DALRD3;ENST00000498794.1_1_3:49055454-49055997:-|nuORF;ENST00000484831.5_1_3:49054806-49055997:-|nuORF ENST00000460505.5_1_3:49053470-49055997:-|nuORF ENST00000460505.5_1_3:49053470-49055997:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2357482910156 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 61.33 1 61.33 60.83 61.83 0 0 0 0 0.039428 1 11769 11769 57.471 6.6163 1 49028 6559 32662 32683 48117 48117 0.01901505626483413 VGETLGALN 9 Unmodified _VGETLGALN_ 0 0 0 ENST00000460505.5_1_3:49053470-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-2|DALRD3;ENSG00000178149|ENST00000341949|DALRD3;nc|ENSG00000178149|Q5D0E6-3|DALRD3;ENST00000498794.1_1_3:49055454-49055997:-|nuORF;ENST00000484831.5_1_3:49054806-49055997:-|nuORF ENST00000460505.5_1_3:49053470-49055997:-|nuORF ENST00000460505.5_1_3:49053470-49055997:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23565673828125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 64.243 1 60.986 60.486 61.486 -3.2567 0 0 0 0.020396 1 12060 12060 67.344 9.8725 1 49029 6559 32662 32683 48118 48118 0.01901505626483413 VGETNWPI 8 Unmodified _VGETNWPI_ 0 0 0 REV__ENST00000442636.1_1_1:8939680-8939773:+|nuORF REV__ENST00000442636.1_1_1:8939680-8939773:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.230712890625 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 179.52 1 174.65 174.15 175.15 -4.868 0 0 0 0.23294 1 35768 35768 0.62683 0 1 + 49030 21721 32663 32684 48119 48119 -0.01086477027968158 VGEVKRCE 8 Unmodified _VGEVKRCE_ 0 0 0 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23895263671875 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 70.701 1 67.234 66.734 67.734 -3.467 0 0 0 0.21452 1 13392 13392 13.508 0.97634 1 49031 6983 32664 32685 48120 48120 -0.0031903201407885717 VGEVKRCE 8 Unmodified _VGEVKRCE_ 0 0 0 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23895263671875 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 71.161 1 67.694 67.194 68.194 -3.467 0 0 0 0.21452 1 13483 13483 13.508 0.97634 1 49032 6983 32664 32685 48121 48121 -0.0031903201407885717 VGEVTVTSGPP 11 Unmodified _VGEVTVTSGPP_ 0 0 0 ENSG00000100281|ENST00000216106|HMGXB4;ENST00000418170.5_1_22:35660034-35689641:+|nuORF ENSG00000100281|ENST00000216106|HMGXB4 ENSG00000100281|ENST00000216106|HMGXB4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.260498046875 2 521.774396 1041.53424 -0.33044 -0.00017242 1.4445 0.0007537 1.114 0.00058128 521.7750362951718 69.909 0.52771 66.73 66.437 66.965 -3.1796 17 14 2 0 0 0 0.88709 1 13543 13543 18.146 8.0724 1 1653200 49033 1945 32665 32686 48122 48122 0.015134289981688198 VGEVTVTSGPP 11 Unmodified _VGEVTVTSGPP_ 0 0 0 ENSG00000100281|ENST00000216106|HMGXB4;ENST00000418170.5_1_22:35660034-35689641:+|nuORF ENSG00000100281|ENST00000216106|HMGXB4 ENSG00000100281|ENST00000216106|HMGXB4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2791137695312 2 521.774396 1041.53424 -0.34691 -0.00018101 0.77047 0.00040201 0.42356 0.000221 521.7747817117487 70.394 0.39163 66.814 66.591 66.982 -3.5798 17 10 2 0 0 0 0.88709 1 13229 13229 8.7454 4.801 1 1331300 49034 1945 32665 32686 48123 48123 0.015134289981688198 VGEVVKQADV 10 Unmodified _VGEVVKQADV_ 0 0 0 ENST00000476372.1_1_11:293373-294746:+|nuORF ENST00000476372.1_1_11:293373-294746:+|nuORF ENST00000476372.1_1_11:293373-294746:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.279541015625 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 158.3 1 153.03 152.53 153.53 -5.2748 0 0 0 0.22588 1 30723 30723 4.897 0.141 1 49035 10287 32666 32687 48124 48124 0.04629421752088092 VGFACPAP 8 Unmodified _VGFACPAP_ 0 0 0 REV__ENST00000282701.2_1_4:81952173-81952551:+|nuORF REV__ENST00000282701.2_1_4:81952173-81952551:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2112731933594 2 381.186174 760.357796 NaN NaN NaN NaN NaN NaN NaN 17.002 1 15.786 15.286 16.286 -1.2159 0 0 0 0.21486 1 2704 2704 2.8892 0.31174 1 + 49036 20316 32667 32688 48125 48125 -0.031968586459925064 VGFCYARNM 9 Unmodified _VGFCYARNM_ 0 0 0 ENST00000367090.3_1_6:159029746-159044587:+|nuORF ENST00000367090.3_1_6:159029746-159044587:+|nuORF ENST00000367090.3_1_6:159029746-159044587:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 353.8629150390625 3 354.161612 1059.46301 -0.36722 -0.00013005 0.31867 0.00011286 -0.048547 -1.7193E-05 354.16160989360816 16.04 0.20743 16.04 15.922 16.129 0 11 5 3 0 0 0 0.82535 1 2455 2455 0.26902 0 1 696760 49037 9055 32668 32689 48126 48126 -0.06434685511885618 VGFCYARNM 9 Unmodified _VGFCYARNM_ 0 0 0 ENST00000367090.3_1_6:159029746-159044587:+|nuORF ENST00000367090.3_1_6:159029746-159044587:+|nuORF ENST00000367090.3_1_6:159029746-159044587:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 354.161612 1059.46301 -0.54687 -0.00019368 0.24434 8.6536E-05 -0.30253 -0.00010714 354.1616397138895 17.153 0.20563 15.937 15.811 16.016 -1.2159 -0.051466 -3.187E-05 NaN 0.26902 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 504310 49038 9055 32668 32689 -0.06434685511885618 VGFEQLWE 8 Unmodified _VGFEQLWE_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.05987548828125 3 336.499275 1006.476 -0.32316 -0.00010874 0.12994 4.3724E-05 -0.19322 -6.5019E-05 336.49933609930156 37.526 0.32047 37.526 37.327 37.647 0 12 8 2 0 0 0 1.0281 1 6907 6907 0.45834 0.45834 1 1132900 + 49039 19411 32669 32690 48127 48127 -0.02698207856474255 VGFEQLWE 8 Unmodified _VGFEQLWE_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 336.499275 1006.476 -0.53064 -0.00017856 0.3972 0.00013366 -0.13344 -4.4902E-05 336.4993988839897 40.044 0.39037 37.495 37.276 37.666 -2.5491 0.027903 0.00012507 NaN 0.45834 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1120100 + 49040 19411 32669 32690 -0.02698207856474255 VGFEQLWE 8 Unmodified _VGFEQLWE_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 336.499275 1006.476 0.0056833 1.9124E-06 -0.01399 -4.7076E-06 -0.0083066 -2.7952E-06 336.49923571359295 39.978 0.42169 37.438 37.218 37.64 -2.5398 -0.028684 -0.00029003 NaN 0.45834 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1299500 + 49041 19411 32669 32690 -0.02698207856474255 VGFEQLWE 8 Unmodified _VGFEQLWE_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 336.499275 1006.476 -0.56737 -0.00019092 0.77035 0.00025922 0.20297 6.83E-05 336.4994891580787 39.862 0.37976 37.409 37.234 37.614 -2.4531 -0.058325 0.00050176 NaN 0.45834 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 678150 + 49042 19411 32669 32690 -0.02698207856474255 VGFLHYRFI 9 Unmodified _VGFLHYRFI_ 0 0 0 ENST00000551005.5_1_12:50537518-50537860:-|nuORF ENST00000551005.5_1_12:50537518-50537860:-|nuORF ENST00000551005.5_1_12:50537518-50537860:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3314819335938 2 576.321651 1150.62875 NaN NaN NaN NaN NaN NaN NaN 143.36 1 138.33 137.83 138.83 -5.0261 0 0 0 0.19656 1 27638 27638 0.12781 0 1 49043 11178 32670 32691 48128 48128 0.059460323307803264 VGFLRRTA 8 Unmodified _VGFLRRTA_ 0 0 0 REV__ENSG00000187664|ENST00000291481|HAPLN4 REV__ENSG00000187664|ENST00000291481|HAPLN4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2342834472656 2 460.277244 918.539935 NaN NaN NaN NaN NaN NaN NaN 88.532 1 84.74 84.24 85.24 -3.7926 0 0 0 0.23664 1 17319 17319 3.2813 2.9743 1 + 49044 19103 32671 32692 48129 48129 0.0774061709111038 VGFLSDKY 8 Unmodified _VGFLSDKY_ 0 0 0 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 61.955 1 61.955 61.455 62.455 0 0 0 0 0.23584 1 11887 11887 0.62683 0 1 49045 26382 32672 32693 48130 48130 0.003546936318457483 VGFLSDKY 8 Unmodified _VGFLSDKY_ 0 0 0 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16949462890625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.521 1 69.521 69.021 70.021 0 0 0 0 0.23182 1 13461 13461 0.12286 0 1 49046 26382 32672 32693 48131 48131 0.003546936318457483 VGFLSDKY 8 Unmodified _VGFLSDKY_ 0 0 0 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697082519531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 72.497 1 72.497 71.997 72.997 0 0 0 0 0.23182 1 14060 14060 0.62683 0 1 49047 26382 32672 32693 48132 48132 0.003546936318457483 VGFLSDKY 8 Unmodified _VGFLSDKY_ 0 0 0 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 124.24 1 124.24 123.74 124.74 0 0 0 0 0.23538 1 24494 24494 0.12286 0 1 49048 26382 32672 32693 48133 48133 0.003546936318457483 VGFLSDKY 8 Unmodified _VGFLSDKY_ 0 0 0 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 59.095 1 56.185 55.685 56.685 -2.9105 0 0 0 0.23538 1 11354 11354 0.12286 0.049601 1 49049 26382 32672 32693 48134 48134 0.003546936318457483 VGFLSDKY 8 Unmodified _VGFLSDKY_ 0 0 0 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 129.15 1 124.52 124.02 125.02 -4.6292 0 0 0 0.23182 1 25458 25458 0.62683 0 1 49050 26382 32672 32693 48135 48135 0.003546936318457483 VGFLSDKY 8 Unmodified _VGFLSDKY_ 0 0 0 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16546630859375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.647 1 71.924 71.424 72.424 -3.7227 0 0 0 0.23182 1 14311 14311 0.62683 0 1 49051 26382 32672 32693 48136 48136 0.003546936318457483 VGFLSDKY 8 Unmodified _VGFLSDKY_ 0 0 0 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16534423828125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 44.713 1 41.965 41.465 42.465 -2.7475 0 0 0 0.23584 1 8097 8097 0.12286 0 1 49052 26382 32672 32693 48137 48137 0.003546936318457483 VGFLSDKY 8 Unmodified _VGFLSDKY_ 0 0 0 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 72.72 1 69.181 68.681 69.681 -3.5385 0 0 0 0.23584 1 13788 13788 0.12286 0 1 49053 26382 32672 32693 48138 48138 0.003546936318457483 VGFLTYVY 8 Unmodified _VGFLTYVY_ 0 0 0 ENST00000573523.5_1_17:4574736-4578861:-|nuORF;ENST00000575534.1_1_17:4578567-4578798:-|nuORF ENST00000573523.5_1_17:4574736-4578861:-|nuORF ENST00000573523.5_1_17:4574736-4578861:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2549743652344 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 5.834 1 4.7941 4.2941 5.2941 -1.04 0 0 0 0.21486 1 337 337 0.79363 0 1 49054 11436 32673 32694 48139 48139 0.013841681542771767 VGFLVLKR 8 Unmodified _VGFLVLKR_ 0 0 0 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1965026855469 3 311.207767 930.601472 NaN NaN NaN NaN NaN NaN NaN 64.08 1 61.082 60.582 61.582 -2.9975 0 0 0 0.21486 1 12389 12389 0.45834 0 1 49055 26224 32674 32695 48140 48140 0.13339548790406752 VGFLVLKR 8 Unmodified _VGFLVLKR_ 0 0 0 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2056579589844 3 311.207767 930.601472 NaN NaN NaN NaN NaN NaN NaN 66.272 1 63.225 62.725 63.725 -3.047 0 0 0 0.21486 1 12838 12838 0.45834 0 1 49056 26224 32674 32695 48141 48141 0.13339548790406752 VGFLVLKR 8 Unmodified _VGFLVLKR_ 0 0 0 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.24102783203125 3 311.207767 930.601472 NaN NaN NaN NaN NaN NaN NaN 64.774 1 61.491 60.991 61.991 -3.2832 0 0 0 0.21486 1 12166 12166 0.45834 0 1 49057 26224 32674 32695 48142 48142 0.13339548790406752 VGFLVLKR 8 Unmodified _VGFLVLKR_ 0 0 0 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 tr|U7SV04|U7SV04_FUSNUDNApolymeraseIIIsubunitdeltaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01077PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2220153808594 3 311.207767 930.601472 NaN NaN NaN NaN NaN NaN NaN 71.086 1 67.619 67.119 68.119 -3.467 0 0 0 0.21486 1 13469 13469 0.45834 0 1 49058 26224 32674 32695 48143 48143 0.13339548790406752 VGFPGHPGPP 10 Unmodified _VGFPGHPGPP_ 0 0 0 COL11A1|p.D1316H|1|0.23|ENSG00000060718|chr1:102914384-102914384|C/G|missense_variant COL11A1|p.D1316H|1|0.23|ENSG00000060718|chr1:102914384-102914384|C/G|missense_variant COL11A1|p.D1316H|1|0.23|ENSG00000060718|chr1:102914384-102914384|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24591064453125 2 481.248152 960.481751 NaN NaN NaN NaN NaN NaN NaN 16.012 1 14.659 14.159 15.159 -1.3534 0 0 0 0.22588 1 2246 2246 4.3292 0.38484 1 49059 609 32675 32696 48144 48144 -7.064554142743873E-05 VGFPKDYN 8 Unmodified _VGFPKDYN_ 0 0 0 tr|U7STE8|U7STE8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01322PE=4SV=1 tr|U7STE8|U7STE8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01322PE=4SV=1 tr|U7STE8|U7STE8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01322PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.15972900390625 3 313.823871 938.449782 NaN NaN NaN NaN NaN NaN NaN 60.734 1 60.734 60.234 61.234 0 0 0 0 0.21486 1 11650 11650 1.6526 0 1 49060 26143 32676 32697 48145 48145 -0.021904770279661534 VGFPPGYL 8 Unmodified _VGFPPGYL_ 0 0 0 REV__ENSG00000139445|ENST00000299162|FOXN4 REV__ENSG00000139445|ENST00000299162|FOXN4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2389831542969 2 425.228897 848.44324 NaN NaN NaN NaN NaN NaN NaN 80.283 1 76.773 76.273 77.273 -3.5102 0 0 0 0.21486 1 15680 15680 2.8892 0 1 + 49061 16520 32677 32698 48146 48146 0.01295629811318122 VGFRDQTP 8 Unmodified _VGFRDQTP_ 0 0 0 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24462890625 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 83.953 1 83.953 83.453 84.453 0 0 0 0 0.22692 1 16368 16368 0.25148 0 1 49062 6728 32678 32699 48147 48147 -0.006559587964375169 VGFRDQTP 8 Unmodified _VGFRDQTP_ 0 0 0 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23431396484375 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 84.334 1 84.334 83.834 84.834 0 0 0 0 0.23025 1 16446 16446 0.12286 0 1 49063 6728 32678 32699 48148 48148 -0.006559587964375169 VGFRDQTP 8 Unmodified _VGFRDQTP_ 0 0 0 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.236328125 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 126.17 1 126.17 125.67 126.67 0 0 0 0 0.23025 1 24898 24898 0.12286 0 1 49064 6728 32678 32699 48149 48149 -0.006559587964375169 VGFRDQTP 8 Unmodified _VGFRDQTP_ 0 0 0 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2345275878906 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 131.93 1 127.08 126.58 127.58 -4.8527 0 0 0 0.23487 1 25338 25338 0.12286 0 1 49065 6728 32678 32699 48150 48150 -0.006559587964375169 VGFRDQTP 8 Unmodified _VGFRDQTP_ 0 0 0 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2365417480469 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 173.57 1 168.67 168.17 169.17 -4.8977 0 0 0 0.22684 1 34467 34467 0.12286 0.049601 1 49066 6728 32678 32699 48151 48151 -0.006559587964375169 VGFRGLII 8 Unmodified _VGFRGLII_ 0 0 0 REV__tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1 REV__tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.7775573730469 2 437.779088 873.543623 NaN NaN NaN NaN NaN NaN NaN 149.16 1 144.45 143.95 144.95 -4.7095 0 0 0 0.23749 1 29624 29624 0.0082765 0 1 + 49067 25078 32679 32700 48152 48152 0.101792868649909 VGFRGLII 8 Unmodified _VGFRGLII_ 0 0 0 REV__tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1 REV__tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.77728271484375 2 437.779088 873.543623 NaN NaN NaN NaN NaN NaN NaN 149.59 1 144.47 143.97 144.97 -5.1204 0 0 0 0.23749 1 28988 28988 0.0082765 0 1 + 49068 25078 32679 32700 48153 48153 0.101792868649909 VGFRKIEN 8 Unmodified _VGFRKIEN_ 0 0 0 REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1 REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7760009765625 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 16.224 1 15.008 14.508 15.508 -1.2159 0 0 0 0.23749 1 2543 2543 0.0082765 0 1 + 49069 25380 32680 32701 48154 48154 0.052208935086468955 VGFRSISTNN 10 Unmodified _VGFRSISTNN_ 0 0 0 REV__PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant REV__PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7831420898438 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 177.85 1 177.85 177.35 178.35 0 0 0 0 0.22588 1 36845 36845 3.5965 0 1 + 49070 18907 32681 32702 48155 48155 0.008587693238041538 VGFSLMKF 8 Unmodified _VGFSLMKF_ 0 0 0 REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 22.506 1 22.506 22.006 23.006 0 0 0 0 0.21486 1 3809 3809 3.9444 0 1 + 49071 12988 32682 32703 48156 48156 0.022165320020576473 VGFSNYKF 8 Unmodified _VGFSNYKF_ 0 0 0 ENST00000411421.1_1_13:69559377-69559785:+|nuORF;ZDHHC2|p.S285Qfs*3|1|0.14|ENSG00000104219|chr8:17210049-17210049|T/-|frameshift_variant;nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20;nc|ENSG00000180776|Q5W0Z9-3|ZDHHC20;ENSG00000180776|ENST00000400590|ZDHHC20;ENSG00000104219|ENST00000262096|ZDHHC2 ENST00000411421.1_1_13:69559377-69559785:+|nuORF ENST00000411421.1_1_13:69559377-69559785:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24432373046875 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 30.983 1 28.956 28.456 29.456 -2.0264 0 0 0 0.2074 1 5332 5332 19.439 1.304 1 49072 2223 32683 32704 48157 48157 -0.011298866482889025 VGFSQHET 8 Unmodified _VGFSQHET_ 0 0 0 ENSG00000007384|ENST00000262316|RHBDF1 ENSG00000007384|ENST00000262316|RHBDF1 ENSG00000007384|ENST00000262316|RHBDF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 302.04522705078125 3 302.143492 903.408646 NaN NaN NaN NaN NaN NaN NaN 58.533 1 55.281 54.781 55.781 -3.2517 0 0 0 0.21486 1 10880 10880 1.6526 1.1943 1 49073 1024 32684 32705 48158 48158 -0.04692238067434573 VGFSQHET 8 Unmodified _VGFSQHET_ 0 0 0 ENSG00000007384|ENST00000262316|RHBDF1 ENSG00000007384|ENST00000262316|RHBDF1 ENSG00000007384|ENST00000262316|RHBDF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.0322265625 3 302.143492 903.408646 NaN NaN NaN NaN NaN NaN NaN 34.065 1 31.849 31.349 32.349 -2.2158 0 0 0 0.21486 1 5957 5957 1.6526 1.1943 1 49074 1024 32684 32705 48159 48159 -0.04692238067434573 VGFSTLKRLC 10 Unmodified _VGFSTLKRLC_ 0 0 0 ENST00000262304.8_1_16:2139481-2139592:-|nuORF ENST00000262304.8_1_16:2139481-2139592:-|nuORF ENST00000262304.8_1_16:2139481-2139592:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2142028808594 3 375.214593 1122.62195 -0.33958 -0.00012741 0.21944 8.2336E-05 -0.12014 -4.5078E-05 375.2146730353141 34.775 0.48776 32.499 32.239 32.726 -2.2766 32 13 3 0 0 0 0.69673 1 6073 6073 11.518 0.02317 1 2884400 49075 8310 32685 32706 48160 48160 0.06554351387921997 VGFTKIKKK 9 Unmodified _VGFTKIKKK_ 0 0 0 tr|U7SSG5|U7SSG5_FUSNUCobalttransportproteinCbiMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiMPE=3SV=1 tr|U7SSG5|U7SSG5_FUSNUCobalttransportproteinCbiMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiMPE=3SV=1 tr|U7SSG5|U7SSG5_FUSNUCobalttransportproteinCbiMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiMPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 350.1292419433594 3 350.234093 1047.68045 NaN NaN NaN NaN NaN NaN NaN 152.28 1 147.04 146.54 147.54 -5.2365 0 0 0 0.23508 1 29523 29523 0.26902 0.033176 1 49076 26103 32686 32707 48161 48161 0.158517760246923 VGFTKIKKK 9 Unmodified _VGFTKIKKK_ 0 0 0 tr|U7SSG5|U7SSG5_FUSNUCobalttransportproteinCbiMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiMPE=3SV=1 tr|U7SSG5|U7SSG5_FUSNUCobalttransportproteinCbiMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiMPE=3SV=1 tr|U7SSG5|U7SSG5_FUSNUCobalttransportproteinCbiMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiMPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.16015625 3 350.234093 1047.68045 NaN NaN NaN NaN NaN NaN NaN 146.39 1 141.39 140.89 141.89 -5 0 0 0 0.23508 1 28329 28329 0.26902 0.033176 1 49077 26103 32686 32707 48162 48162 0.158517760246923 VGFTSNKY 8 Unmodified _VGFTSNKY_ 0 0 0 REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1 REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2320251464844 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 179.07 1 174.21 173.71 174.71 -4.868 0 0 0 0.23711 1 35658 35658 0.12286 0 1 + 49078 25134 32687 32708 48163 48163 -0.01086477027968158 VGFVDFDTP 9 Unmodified _VGFVDFDTP_ 0 0 0 nc|ENSG00000119844|Q6ULP2-8|AFTPH;nc|ENSG00000119844|Q6ULP2-6|AFTPH;ENSG00000119844|ENST00000409933|AFTPH;nc|ENSG00000119844|Q6ULP2-9|AFTPH;nc|ENSG00000119844|Q6ULP2-7|AFTPH;ENST00000498706.5_1_2:64778608-64806757:+|nuORF nc|ENSG00000119844|Q6ULP2-8|AFTPH nc|ENSG00000119844|Q6ULP2-8|AFTPH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.9988708496094 3 332.827281 995.460012 NaN NaN NaN NaN NaN NaN NaN 27.216 1 25.582 25.082 26.082 -1.6347 0 0 0 0.23508 1 4545 4545 1.1933 0 1 49079 3103 32688 32709 48164 48164 -0.03789914093374591 VGFVVSFR 8 Unmodified _VGFVVSFR_ 0 0 0 CSTF2T|p.S41F|1|0.16|ENSG00000177613|chr10:51699428-51699428|G/A|missense_variant CSTF2T|p.S41F|1|0.16|ENSG00000177613|chr10:51699428-51699428|G/A|missense_variant CSTF2T|p.S41F|1|0.16|ENSG00000177613|chr10:51699428-51699428|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.0389709472656 3 304.176356 909.507237 NaN NaN NaN NaN NaN NaN NaN 27.07 1 25.147 24.647 25.647 -1.9222 0 0 0 0.21486 1 4507 4507 1.6526 0 1 49080 737 32689 32710 48165 48165 0.04886409968287353 VGFVVSFR 8 Unmodified _VGFVVSFR_ 0 0 0 CSTF2T|p.S41F|1|0.16|ENSG00000177613|chr10:51699428-51699428|G/A|missense_variant CSTF2T|p.S41F|1|0.16|ENSG00000177613|chr10:51699428-51699428|G/A|missense_variant CSTF2T|p.S41F|1|0.16|ENSG00000177613|chr10:51699428-51699428|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.0530090332031 3 304.176356 909.507237 NaN NaN NaN NaN NaN NaN NaN 44.808 1 42.061 41.561 42.561 -2.7475 0 0 0 0.21486 1 8116 8116 1.6526 0 1 49081 737 32689 32710 48166 48166 0.04886409968287353 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2644348144531 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 58.599 1 58.599 58.099 59.099 0 0 0 0 0.23711 1 11219 11219 0.0082765 0 1 + 49082 19108 32690 32711 48167 48167 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26611328125 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 63.037 1 63.037 62.537 63.537 0 0 0 0 0.23711 1 12113 12113 0.0082765 0 1 + 49083 19108 32690 32711 48168 48168 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2644348144531 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 74.708 1 74.708 74.208 75.208 0 0 0 0 0.23294 1 14505 14505 1.7423 1.6145 1 + 49084 19108 32690 32711 48169 48169 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.264404296875 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 107.69 1 107.69 107.19 108.19 0 0 0 0 0.22834 1 21173 21173 0.12286 0 1 + 49085 19108 32690 32711 48170 48170 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2647399902344 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 65.756 1 62.709 62.209 63.209 -3.047 0 0 0 0.23711 1 12731 12731 0.0082765 0 1 + 49086 19108 32690 32711 48171 48171 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2639465332031 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 66.058 1 63.011 62.511 63.511 -3.047 0 0 0 0.23711 1 12793 12793 0.30703 0.29875 1 + 49087 19108 32690 32711 48172 48172 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.264404296875 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 96.765 1 92.667 92.167 93.167 -4.0978 0 0 0 0.22834 1 18979 18979 0.12286 0 1 + 49088 19108 32690 32711 48173 48173 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2654113769531 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 101.14 1 96.977 96.477 97.477 -4.1594 0 0 0 0.22834 1 19881 19881 0.68139 0.27313 1 + 49089 19108 32690 32711 48174 48174 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2652282714844 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 56.034 1 52.845 52.345 53.345 -3.1895 0 0 0 0.23366 1 10374 10374 0.12286 0 1 + 49090 19108 32690 32711 48175 48175 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640686035156 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 66.643 1 63.146 62.646 63.646 -3.4965 0 0 0 0.23366 1 12493 12493 0.12286 0 1 + 49091 19108 32690 32711 48176 48176 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26446533203125 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 78.354 1 74.588 74.088 75.088 -3.7664 0 0 0 0.23366 1 14859 14859 0.12286 0 1 + 49092 19108 32690 32711 48177 48177 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2646484375 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 101.47 1 97.151 96.651 97.651 -4.3208 0 0 0 0.23294 1 19420 19420 0.68139 0 1 + 49093 19108 32690 32711 48178 48178 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2632141113281 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 161.8 1 156.66 156.16 157.16 -5.1438 0 0 0 0.21323 1 31423 31423 14.582 2.9414 1 + 49094 19108 32690 32711 48179 48179 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26348876953125 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 61.22 1 57.98 57.48 58.48 -3.2395 0 0 0 0.23711 1 11458 11458 0.0082765 0 1 + 49095 19108 32690 32711 48180 48180 0.02082756470485947 VGFWCRVI 8 Unmodified _VGFWCRVI_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2650146484375 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 158.8 1 153.53 153.03 154.03 -5.2712 0 0 0 0.22934 1 30812 30812 0.62683 0.37535 1 + 49096 19108 32690 32711 48181 48181 0.02082756470485947 VGGAGGGMR 9 Unmodified _VGGAGGGMR_ 0 0 0 REV__LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|32|2|anti-sense REV__LTR1_dup85|chr7:101629186-101629993:-|1.8197208364654407|0.0003248618387484|12.45|329.0|32|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2109680175781 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 110.44 1 106.07 105.57 106.57 -4.3776 0 0 0 0.19632 1 21769 21769 0.073264 0.064987 1 + 49097 23825 32691 32712 48182 48182 -0.02476126045564797 VGGAGGLA 8 Unmodified _VGGAGGLA_ 0 0 0 REV__nc|ENSG00000168071|A6NC98-3|CCDC88B REV__nc|ENSG00000168071|A6NC98-3|CCDC88B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2762451171875 1 601.330402 600.323125 0.39627 0.00023829 -1.7171 -0.0010325 -1.3208 -0.00079425 601.3315114024853 156.86 0.20312 156.86 156.79 157 0 6 5 2 0 0 0 0.88047 2 31481 31472;31481 0.79363 0 1 2230200 + 49098 22366 32692 32713 48183;48184 48184 0.006976415375561373 VGGAPFLC 8 Unmodified _VGGAPFLC_ 0 0 0 REV__ENST00000568223.6_1_16:767979-768486:+|nuORF REV__ENST00000568223.6_1_16:767979-768486:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 382.1938171386719 2 382.193999 762.373446 NaN NaN NaN NaN NaN NaN NaN 82.57 1 78.871 78.371 79.371 -3.6985 0 0 0 0.21486 1 15747 15747 2.8892 0.58649 1 + 49099 23140 32693 32714 48185 48185 -0.017245721289441462 VGGATGEKGP 10 Unmodified _VGGATGEKGP_ 0 0 0 REV__ENSG00000099821|ENST00000588649|POLRMT REV__ENSG00000099821|ENST00000588649|POLRMT MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2294006347656 2 436.727249 871.439946 0.22047 9.6285E-05 0.12426 5.4266E-05 0.34473 0.00015055 436.72718726305646 26.815 0.30472 26.815 26.635 26.939 0 10 8 2 0 0 0 0.65405 1 4716 4716 15.847 0 1 364580 + 49100 14643 32694 32715 48186 48186 -0.0009166503333517539 VGGCLKNA 8 Unmodified _VGGCLKNA_ 0 0 0 REV__ENST00000586142.5_1_18:43310001-43310190:+|nuORF REV__ENST00000586142.5_1_18:43310001-43310190:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21673583984375 2 381.202356 760.390159 NaN NaN NaN NaN NaN NaN NaN 57.519 1 57.519 57.019 58.019 0 0 0 0 0.21486 1 10998 10998 5.7604 0 1 + 49101 23264 32695 32716 48187 48187 0.00037928757001282065 VGGDAAGD 8 Unmodified _VGGDAAGD_ 0 0 0 ENST00000344079.9_2_10:134145687-134147072:+|nuORF ENST00000344079.9_2_10:134145687-134147072:+|nuORF ENST00000344079.9_2_10:134145687-134147072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 331.1430969238281 2 331.143018 660.271483 NaN NaN NaN NaN NaN NaN NaN 179.48 1 174.62 174.12 175.12 -4.868 0 0 0 0.21486 1 35756 35756 0.79363 0 1 49102 8883 32696 32717 48188 48188 -0.07224146946998644 VGGDELLYSL 10 Unmodified _VGGDELLYSL_ 0 0 0 REV__ENSG00000174885|ENST00000534750|NLRP6 REV__ENSG00000174885|ENST00000534750|NLRP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2769165039062 2 533.276772 1064.53899 0.62849 0.00033516 -0.23486 -0.00012525 0.39363 0.00020991 533.2765762688794 86.232 1.0865 82.282 81.976 83.063 -3.9503 82 30 4 0 0 0 0.13946 3 16416 16370;16416;16467 49.933 6.1606 1 19406000 + 49103 18436 32697 32718 48189;48190;48191 48190 0.009303131409069465 VGGERWRPA 9 Unmodified _VGGERWRPA_ 0 0 0 ENST00000418034.1_2_1:11865666-11865870:-|nuORF ENST00000418034.1_2_1:11865666-11865870:-|nuORF ENST00000418034.1_2_1:11865666-11865870:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.1870422363281 3 343.185914 1026.53591 NaN NaN NaN NaN NaN NaN NaN 54.666 1 54.666 54.166 55.166 0 0 0 0 0.23508 1 10428 10428 2.4985 0 1 49104 9637 32698 32719 48192 48192 0.02370527597418004 VGGFFFFV 8 Unmodified _VGGFFFFV_ 0 0 0 ENST00000265070.6_1_5:32125897-32126209:-|nuORF ENST00000265070.6_1_5:32125897-32126209:-|nuORF ENST00000265070.6_1_5:32125897-32126209:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2392883300781 2 460.239264 918.463976 NaN NaN NaN NaN NaN NaN NaN 22.65 1 21.096 20.596 21.596 -1.5532 0 0 0 0.2396 1 3879 3879 0 0 1 49105 8347 32699 32720 48193 48193 0.0014822019099938188 VGGFGFGI 8 Unmodified _VGGFGFGI_ 0 0 0 REV__tr|U7SV14|U7SV14_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01471PE=4SV=1 REV__tr|U7SV14|U7SV14_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01471PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 377.5417785644531 2 377.200139 752.385725 NaN NaN NaN NaN NaN NaN NaN 36.946 1 34.598 34.098 35.098 -2.3479 0 0 0 0.2396 1 6540 6540 0 0 1 + 49106 25177 32700 32721 48194 48194 -0.00037212394238395063 VGGFVTLG 8 Unmodified _VGGFVTLG_ 0 0 0 REV__ENST00000521361.5_1_6:112040873-112041254:-|nuORF REV__ENST00000521361.5_1_6:112040873-112041254:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21429443359375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 60.671 1 57.447 56.947 57.947 -3.2237 0 0 0 0.23711 1 11349 11349 0.0082765 0 1 + 49107 13924 32701 32722 48195 48195 0.027670567772588583 VGGGAQGG 8 Unmodified _VGGGAQGG_ 0 0 0 REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2903442382812 1 602.289265 601.281989 1.2199 0.00073475 3.0049 0.0018098 4.2248 0.0025446 602.290322525186 164.62 0.10391 159.84 159.78 159.89 -4.7898 4 2 2 0 0 0 8448 1 32920 32920 0 0 1 10768000 + 49108 20051 32702 32723 48196 48196 -0.034601195018922226 VGGGAQGG 8 Unmodified _VGGGAQGG_ 0 0 0 REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2890625 1 602.289265 601.281989 0.86631 0.00052177 4.0841 0.0024598 4.9505 0.0029816 602.2873787531627 119.14 0.17555 114.5 114.35 114.53 -4.645 6 4 2 0 0 0 8448 1 22850 22850 0 0 1 1361100 + 49109 20051 32702 32723 48197 48197 -0.034601195018922226 VGGGAQGG 8 Unmodified _VGGGAQGG_ 0 0 0 REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 602.289265 601.281989 1.2199 0.00073475 3.0049 0.0018098 4.2248 0.0025446 602.290322525186 164.62 0.10391 159.84 159.78 159.89 -4.7898 0 0 NaN 0 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 10768000 + 49110 20051 32702 32723 -0.034601195018922226 VGGGCAPD 8 Unmodified _VGGGCAPD_ 0 0 0 REV__ENST00000225916.9_1_17:40272069-40272126:-|nuORF REV__ENST00000225916.9_1_17:40272069-40272126:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.201416015625 2 338.141964 674.269375 NaN NaN NaN NaN NaN NaN NaN 31.284 1 31.284 30.784 31.784 0 0 0 0 0.2396 1 5645 5645 0 0 1 + 49111 20047 32703 32724 48198 48198 -0.08078898956455305 VGGGCPSV 8 Unmodified _VGGGCPSV_ 0 0 0 REV__NKX6-2|p.A273V|1|0.37|ENSG00000148826|chr10:132784932-132784932|G/A|missense_variant REV__NKX6-2|p.A273V|1|0.37|ENSG00000148826|chr10:132784932-132784932|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.1600646972656 2 338.160157 674.30576 NaN NaN NaN NaN NaN NaN NaN 108.96 1 104.58 104.08 105.08 -4.3776 0 0 0 0.21486 1 21474 21474 5.7604 2.8712 1 + 49112 24362 32704 32725 48199 48199 -0.04442022059743067 VGGGGGAQ 8 Unmodified _VGGGGGAQ_ 0 0 0 REV__KCNK3|p.G276Vfs*52|1|0.29|ENSG00000171303|chr2:26728206-26728206|G/-|frameshift_variant REV__KCNK3|p.G276Vfs*52|1|0.29|ENSG00000171303|chr2:26728206-26728206|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2756958007812 1 602.289265 601.281989 0.86631 0.00052177 4.0841 0.0024598 4.9505 0.0029816 602.2873787531627 119.14 0.17555 114.5 114.35 114.53 -4.645 6 4 2 0 0 0 1.0268 1 22863 22863 2.8892 0 1 1361100 + 49113 23703 32705 32726 48200 48200 -0.03460119501903591 VGGGGGCH 8 Unmodified _VGGGGGCH_ 0 0 0 ENST00000592915.1_1_17:42083422-42084289:+|nuORF ENST00000592915.1_1_17:42083422-42084289:+|nuORF ENST00000592915.1_1_17:42083422-42084289:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.13494873046875 2 322.134473 642.254394 NaN NaN NaN NaN NaN NaN NaN 101.62 1 97.302 96.802 97.802 -4.3208 0 0 0 0.21486 1 19449 19449 0.79363 0 1 49114 11640 32706 32727 48201 48201 -0.08104346033792353 VGGGICGG 8 Unmodified _VGGGICGG_ 0 0 0 REV__ENST00000598707.5_1_19:39306922-39322412:-|nuORF REV__ENST00000598707.5_1_19:39306922-39322412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 309.8194580078125 2 310.147049 618.279546 NaN NaN NaN NaN NaN NaN NaN 110.8 1 106.31 105.81 106.81 -4.4915 0 0 0 0.2396 1 21270 21270 0.049793 0 1 + 49115 14944 32707 32728 48202 48202 -0.0448629123121691 VGGGKGRG 8 Unmodified _VGGGKGRG_ 0 0 0 ENSG00000066735|ENST00000423312|KIF26A ENSG00000066735|ENST00000423312|KIF26A ENSG00000066735|ENST00000423312|KIF26A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.1601257324219 2 344.198462 686.382371 NaN NaN NaN NaN NaN NaN NaN 57.452 1 57.452 56.952 57.952 0 0 0 0 0.2396 1 10984 10984 0 0 1 49116 1376 32708 32729 48203 48203 0.02663537551745776 VGGGKKKG 8 Unmodified _VGGGKKKG_ 0 0 0 REV__ENST00000216802.9_1_14:24615845-24615968:-|nuORF REV__ENST00000216802.9_1_14:24615845-24615968:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 366.1819152832031 2 365.732138 729.449723 -0.23361 -8.5439E-05 0.40546 0.00014829 0.17185 6.285E-05 365.73225222036376 20.493 0.31883 20.493 20.313 20.632 0 13 8 2 0 0 0 0.89951 1 3360 3360 0 0 1 720770 + 49117 20020 32709 32730 48204 48204 0.07417567762706767 VGGGPCLLLL 10 Unmodified _VGGGPCLLLL_ 0 0 0 REV__ENST00000426231.5_2_X:153641633-153647973:+|nuORF REV__ENST00000426231.5_2_X:153641633-153647973:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 471.27655029296875 2 471.278063 940.541574 NaN NaN NaN NaN NaN NaN NaN 149.7 1 149.7 149.2 150.2 0 0 0 0 2.8426 1 29971 29971 0.0013812 0.0013812 1 + 49118 21564 32710 32731 48205 48205 0.0689249006487671 VGGGPGHF 8 Unmodified _VGGGPGHF_ 0 0 0 REV__AGBL1|p.M908Nfs*57|1|0.3|ENSG00000273540|chr15:86554401-86554402|-/A|frameshift_variant REV__AGBL1|p.M908Nfs*57|1|0.3|ENSG00000273540|chr15:86554401-86554402|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 364.19061279296875 2 364.179738 726.344923 NaN NaN NaN NaN NaN NaN NaN 20.333 1 18.936 18.436 19.436 -1.3966 0 0 0 0.2396 1 3394 3394 0 0 1 + 49119 12977 32711 32732 48206 48206 -0.029195537138662075 VGGGQVGG 8 Unmodified _VGGGQVGG_ 0 0 0 REV__ENST00000451122.5_1_7:116165439-116165832:+|nuORF REV__ENST00000451122.5_1_7:116165439-116165832:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7659301757812 1 630.320565 629.313289 0.40389 0.00025458 1.2103 0.00076286 1.6142 0.0010174 630.3174171047788 157.22 0.10306 151.94 151.87 151.97 -5.2854 4 2 2 0 0 0 0.89951 1 30514 30514 0 0 1 522260 + 49120 21804 32712 32733 48207 48207 -0.016195464678048666 VGGGSLPE 8 Unmodified _VGGGSLPE_ 0 0 0 REV__nc|ENSG00000157423|Q4G0P3-8|HYDIN REV__nc|ENSG00000157423|Q4G0P3-8|HYDIN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 358.0709228515625 2 358.184686 714.354819 NaN NaN NaN NaN NaN NaN NaN 121.86 1 121.86 121.36 122.36 0 0 0 0 0.21486 1 24022 24022 4.756 2.1785 1 + 49121 24109 32713 32734 48208 48208 -0.013784104991486856 VGGHAAPA 8 Unmodified _VGGHAAPA_ 0 0 0 ENSG00000116176|ENST00000234798|TPSG1 ENSG00000116176|ENST00000234798|TPSG1 ENSG00000116176|ENST00000234798|TPSG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.173095703125 2 340.179738 678.344923 NaN NaN NaN NaN NaN NaN NaN 34.936 1 34.936 34.436 35.436 0 0 0 0 0.2396 1 6405 6405 0 0 1 49122 2912 32714 32735 48209 48209 -0.007115537138702166 VGGHDLDS 8 Unmodified _VGGHDLDS_ 0 0 0 REV__ENST00000367351.3_1_6:150266462-150266603:+|nuORF REV__ENST00000367351.3_1_6:150266462-150266603:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 800.3634643554688 1 799.358073 798.350796 1.5809 0.0012637 -0.9468 -0.00075683 0.63408 0.00050686 799.3572263057536 26.882 1.335 25.099 23.937 25.272 -1.7821 59 38 2 0 0 0 0.83982 1 4669 4669 2.5775 0 1 951470 + 49123 20919 32715 32736 48210 48210 -0.056444999928658035 VGGHGAPP 8 Unmodified _VGGHGAPP_ 0 0 0 REV__ENST00000314891.10_1_15:34654487-34657250:-|nuORF REV__ENST00000314891.10_1_15:34654487-34657250:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.1886901855469 2 346.179738 690.344923 NaN NaN NaN NaN NaN NaN NaN 27.786 1 25.956 25.456 26.456 -1.8297 0 0 0 0.23711 1 4949 4949 0.62683 0.3198 1 + 49124 20515 32716 32737 48211 48211 -0.0126355371386353 VGGHGCGG 8 Unmodified _VGGHGCGG_ 0 0 0 ENST00000343242.8_1_7:1580346-1581177:+|nuORF ENST00000343242.8_1_7:1580346-1581177:+|nuORF ENST00000343242.8_1_7:1580346-1581177:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 322.135009765625 2 322.134473 642.254394 NaN NaN NaN NaN NaN NaN NaN 95.886 1 92.005 91.505 92.505 -3.881 0 0 0 0.21486 1 18402 18402 0.79363 0 1 49125 8874 32717 32738 48212 48212 -0.08104346033780985 VGGHKKGS 8 Unmodified _VGGHKKGS_ 0 0 0 REV__nc|ENSG00000135905|Q96BY6-3|DOCK10 REV__nc|ENSG00000135905|Q96BY6-3|DOCK10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 385.50946044921875 2 385.219395 768.424236 NaN NaN NaN NaN NaN NaN NaN 106.34 1 102.08 101.58 102.58 -4.2638 0 0 0 0.23711 1 20931 20931 0.0082765 0 1 + 49126 16297 32718 32739 48213 48213 0.03076093240292721 VGGHQRNFH 9 Unmodified _VGGHQRNFH_ 0 0 0 REV__ENSG00000221886|ENST00000408953|FAM200C REV__ENSG00000221886|ENST00000408953|FAM200C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.2004699707031 3 351.17753 1050.51076 NaN NaN NaN NaN NaN NaN NaN 179.58 1 174.71 174.21 175.21 -4.868 0 0 0 0.23508 1 35782 35782 1.1933 0 1 + 49127 19709 32719 32740 48214 48214 -0.012475272051460706 VGGHSHGC 8 Unmodified _VGGHSHGC_ 0 0 0 nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4;ENSG00000242419|ENST00000306593|PCDHGC4 nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.1590576171875 2 377.15848 752.302406 NaN NaN NaN NaN NaN NaN NaN 53.684 1 53.684 53.184 54.184 0 0 0 0 0.2396 1 10228 10228 0 0 1 49128 7866 32720 32741 48215 48215 -0.083652721137355 VGGHSHGC 8 Unmodified _VGGHSHGC_ 0 0 0 nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4;ENSG00000242419|ENST00000306593|PCDHGC4 nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.15924072265625 2 377.15848 752.302406 NaN NaN NaN NaN NaN NaN NaN 53.973 1 53.973 53.473 54.473 0 0 0 0 0.2396 1 10288 10288 0 0 1 49129 7866 32720 32741 48216 48216 -0.083652721137355 VGGHSHGC 8 Unmodified _VGGHSHGC_ 0 0 0 nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4;ENSG00000242419|ENST00000306593|PCDHGC4 nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.1955261230469 2 377.15848 752.302406 NaN NaN NaN NaN NaN NaN NaN 65.401 1 62.354 61.854 62.854 -3.047 0 0 0 0.2396 1 12659 12659 0 0 1 49130 7866 32720 32741 48217 48217 -0.083652721137355 VGGIIETKY 9 Unmodified _VGGIIETKY_ 0 0 0 REV__ENSG00000169499|ENST00000617275|PLEKHA2 REV__ENSG00000169499|ENST00000617275|PLEKHA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2763366699219 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 72.728 1 69.19 68.69 69.69 -3.5385 0 0 0 0.23411 1 13789 13789 13.508 2.684 1 + 49131 18106 32721 32742 48218 48218 0.04846938211710494 VGGKEGRFG 9 Unmodified _VGGKEGRFG_ 0 0 0 HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|89|1|anti-sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|89|1|anti-sense HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|89|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7596130371094 2 453.743234 905.471915 NaN NaN NaN NaN NaN NaN NaN 88.662 1 84.912 84.412 85.412 -3.7501 0 0 0 0.18966 1 16975 16975 2.6312 1.4164 1 49132 11900 32722 32743 48219 48219 0.01539747440483552 VGGLELPRP 9 Unmodified _VGGLELPRP_ 0 0 0 REV__ENST00000605367.5_1_12:51777307-51785172:-|nuORF REV__ENST00000605367.5_1_12:51777307-51785172:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.186279296875 3 313.187032 936.539266 0.27112 8.4912E-05 -0.28787 -9.0156E-05 -0.016744 -5.244E-06 313.18687882489564 32.154 0.69918 30.127 29.764 30.463 -2.0264 54 19 4 0 0 0 0.81221 1 5498 5498 1.1933 0.12188 1 11354000 + 49133 23449 32723 32744 48220 48220 0.06845777651415119 VGGLELPRP 9 Unmodified _VGGLELPRP_ 0 0 0 REV__ENST00000605367.5_1_12:51777307-51785172:-|nuORF REV__ENST00000605367.5_1_12:51777307-51785172:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 313.187032 936.539266 -0.45495 -0.00014249 0.54088 0.0001694 0.085933 2.6913E-05 313.1871448618217 30.276 0.63607 30.276 29.955 30.591 0 0.14234 0.00031731 NaN 1.1933 46 17 4 NaN NaN NaN NaN 0 NaN NaN 0 10761000 + 49134 23449 32723 32744 0.06845777651415119 VGGLELPRP 9 Unmodified _VGGLELPRP_ 0 0 0 REV__ENST00000605367.5_1_12:51777307-51785172:-|nuORF REV__ENST00000605367.5_1_12:51777307-51785172:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 313.187032 936.539266 -0.090763 -2.8426E-05 0.15113 4.7333E-05 0.060369 1.8907E-05 313.1870236303728 32.255 0.5696 30.024 29.724 30.294 -2.2305 -0.10964 -4.8883E-05 NaN 1.1933 47 15 4 NaN NaN NaN NaN 0 NaN NaN 0 10275000 + 49135 23449 32723 32744 0.06845777651415119 VGGLGKLGKDA 11 Unmodified _VGGLGKLGKDA_ 0 0 0 ENSG00000161634|ENST00000293371|DCD;nc|ENSG00000161634|P81605-2|DCD ENSG00000161634|ENST00000293371|DCD ENSG00000161634|ENST00000293371|DCD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.1790771484375 3 338.869591 1013.58694 -0.036904 -1.2505E-05 0.22251 7.5402E-05 0.18561 6.2897E-05 338.86956477380824 43.861 0.38511 41.095 40.867 41.252 -2.7661 13 10 2 0 0 0 0.54604 1 7937 7937 8.4443 4.568 1 452480 49136 5292 32724 32745 48221 48221 0.08069431851617992 VGGLKEYKLN 10 Unmodified _VGGLKEYKLN_ 0 0 0 REV__ENSG00000127603|ENST00000564288|MACF1 REV__ENSG00000127603|ENST00000564288|MACF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.21685791015625 3 374.21688 1119.62881 NaN NaN NaN NaN NaN NaN NaN 94.586 1 90.595 90.095 91.095 -3.9907 0 0 0 0.22588 1 18536 18536 1.9064 0 1 + 49137 15894 32725 32746 48222 48222 0.07377987540144204 VGGLLGAY 8 Unmodified _VGGLLGAY_ 0 0 0 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2117004394531 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 35.902 1 35.902 35.402 36.402 0 0 0 0 0.21486 1 6605 6605 6.3541 0 1 + 49138 15512 32726 32747 48223 48223 0.02767056777236121 VGGLLGAY 8 Unmodified _VGGLLGAY_ 0 0 0 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2117919921875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 38.334 1 35.865 35.365 36.365 -2.4697 0 0 0 0.23294 1 7102 7102 0.62683 0 1 + 49139 15512 32726 32747 48224 48224 0.02767056777236121 VGGLLGAY 8 Unmodified _VGGLLGAY_ 0 0 0 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2117919921875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 38.343 1 35.854 35.354 36.354 -2.4891 0 0 0 0.21486 1 7103 7103 6.3541 0 1 + 49140 15512 32726 32747 48225 48225 0.02767056777236121 VGGLLGAY 8 Unmodified _VGGLLGAY_ 0 0 0 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2124328613281 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 92.209 1 88.114 87.614 88.614 -4.0946 0 0 0 0.23711 1 17566 17566 0.12286 0 1 + 49141 15512 32726 32747 48226 48226 0.02767056777236121 VGGLLGAY 8 Unmodified _VGGLLGAY_ 0 0 0 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.212158203125 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 92.466 1 88.372 87.872 88.872 -4.0946 0 0 0 0.23711 1 17615 17615 0.12286 0 1 + 49142 15512 32726 32747 48227 48227 0.02767056777236121 VGGLLGAY 8 Unmodified _VGGLLGAY_ 0 0 0 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21234130859375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 92.042 1 88.234 87.734 88.734 -3.8083 0 0 0 0.23294 1 17631 17631 0.12286 0 1 + 49143 15512 32726 32747 48228 48228 0.02767056777236121 VGGLLGAY 8 Unmodified _VGGLLGAY_ 0 0 0 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21234130859375 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 92.06 1 88.252 87.752 88.752 -3.8083 0 0 0 0.21486 1 17635 17635 2.8892 0 1 + 49144 15512 32726 32747 48229 48229 0.02767056777236121 VGGLLGAY 8 Unmodified _VGGLLGAY_ 0 0 0 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 REV__nc|ENSG00000117090|Q13291-2|SLAMF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21356201171875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 96.106 1 92.225 91.725 92.725 -3.881 0 0 0 0.21486 1 18445 18445 2.8892 0 1 + 49145 15512 32726 32747 48230 48230 0.02767056777236121 VGGMTRVPKV 10 Unmodified _VGGMTRVPKV_ 0 0 0 HSPA9|p.M392V|1|0.4|ENSG00000113013|chr5:138561588-138561588|T/C|missense_variant HSPA9|p.M392V|1|0.4|ENSG00000113013|chr5:138561588-138561588|T/C|missense_variant HSPA9|p.M392V|1|0.4|ENSG00000113013|chr5:138561588-138561588|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2686767578125 2 522.305144 1042.59573 NaN NaN NaN NaN NaN NaN NaN 136.18 1 131.35 130.85 131.85 -4.8307 0 0 0 2.8426 1 26220 26220 0.26539 0 1 49146 11923 32727 32748 48231 48231 0.0761408221644615 VGGNSSND 8 Unmodified _VGGNSSND_ 0 0 0 REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1 REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2131652832031 2 375.156657 748.298761 NaN NaN NaN NaN NaN NaN NaN 37.232 1 37.232 36.732 37.732 0 0 0 0 0.2396 1 6880 6880 0.049793 0.049793 1 + 49147 25322 32728 32749 48232 48232 -0.08545663406607673 VGGPEEKIRPP 11 Unmodified _VGGPEEKIRPP_ 0 0 0 REV__ENST00000512215.5_1_4:102268226-102268316:-|nuORF REV__ENST00000512215.5_1_4:102268226-102268316:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2515869140625 2 589.830037 1177.64552 0.13174 7.7707E-05 0.018058 1.0651E-05 0.1498 8.8358E-05 589.8299259530394 38.791 0.41619 36.242 36.05 36.466 -2.5491 23 11 3 0 0 0 0.96036 1 7234 7234 8.1555 0 1 1198400 + 49148 22555 32729 32750 48233 48233 0.06380488426111697 VGGPEWAPLLL 11 Unmodified _VGGPEWAPLLL_ 0 0 0 REV__ENST00000472874.1_1_13:99498284-99512707:-|nuORF REV__ENST00000472874.1_1_13:99498284-99512707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3242797851562 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 124.57 1 119.92 119.42 120.42 -4.6495 0 0 0 0.22632 1 23969 23969 0.026206 0 1 + 49149 22062 32730 32751 48234 48234 0.06935175545504535 VGGPPLEKEPR 11 Unmodified _VGGPPLEKEPR_ 0 0 0 ENSG00000140521|ENST00000268124|POLG;POLG|p.H659Qfs*24|1|0.2|ENSG00000140521|chr15:89324199-89324200|AG/-|frameshift_variant ENSG00000140521|ENST00000268124|POLG ENSG00000140521|ENST00000268124|POLG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2527465820312 2 589.830037 1177.64552 0.18148 0.00010704 -0.23355 -0.00013776 -0.052072 -3.0714E-05 589.8298049175772 38.653 0.24335 36.248 36.162 36.406 -2.4049 10 6 2 0 0 0 0.96036 1 6894 6894 8.1555 0 1 593470 49150 4307 32731 32752 48235 48235 0.0638048842608896 VGGPREEKP 9 Unmodified _VGGPREEKP_ 0 0 0 REV__ENSG00000136383|ENST00000258888|ALPK3 REV__ENSG00000136383|ENST00000258888|ALPK3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.0104064941406 3 323.510174 967.508694 -0.097239 -3.1458E-05 0.019069 6.169E-06 -0.07817 -2.5289E-05 323.5101055386566 22.683 0.28663 21.229 21.083 21.37 -1.4535 18 7 3 0 0 0 0.884 1 3606 3606 1.1933 0.9575 1 828580 + 49151 16328 32732 32753 48236 48236 0.02363999266378869 VGGPREEKP 9 Unmodified _VGGPREEKP_ 0 0 0 REV__ENSG00000136383|ENST00000258888|ALPK3 REV__ENSG00000136383|ENST00000258888|ALPK3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 323.510174 967.508694 -0.47556 -0.00015385 0.33453 0.00010822 -0.14103 -4.5624E-05 323.5102626500956 21.307 0.26845 21.307 21.159 21.427 0 0.044134 0.00045019 NaN 1.1933 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 711240 + 49152 16328 32732 32753 0.02363999266378869 VGGPREEKP 9 Unmodified _VGGPREEKP_ 0 0 0 REV__ENSG00000136383|ENST00000258888|ALPK3 REV__ENSG00000136383|ENST00000258888|ALPK3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 323.510174 967.508694 0.41863 0.00013543 -0.46064 -0.00014902 -0.042014 -1.3592E-05 323.50999013565604 22.806 0.34626 21.253 20.991 21.338 -1.5532 -0.010224 -0.00032155 NaN 1.1933 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 726500 + 49153 16328 32732 32753 0.02363999266378869 VGGPRPALAD 10 Unmodified _VGGPRPALAD_ 0 0 0 REV__chr2:108930242-108930964|378|13.92|0.83|4.07|-|2|EDAR,EDAR|1 REV__chr2:108930242-108930964|378|13.92|0.83|4.07|-|2|EDAR,EDAR|1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.03973388671875 3 318.178536 951.513779 NaN NaN NaN NaN NaN NaN NaN 41.844 1 41.844 41.344 42.344 0 0 0 0 0.22588 1 7815 7815 0.69767 0.23933 1 + 49154 13421 32733 32754 48237 48237 0.03608303128976331 VGGPRPALAD 10 Unmodified _VGGPRPALAD_ 0 0 0 REV__chr2:108930242-108930964|378|13.92|0.83|4.07|-|2|EDAR,EDAR|1 REV__chr2:108930242-108930964|378|13.92|0.83|4.07|-|2|EDAR,EDAR|1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.03961181640625 3 318.178536 951.513779 NaN NaN NaN NaN NaN NaN NaN 45.486 1 45.486 44.986 45.986 0 0 0 0 0.22588 1 8551 8551 0.69767 0.23933 1 + 49155 13421 32733 32754 48238 48238 0.03608303128976331 VGGRKAAC 8 Unmodified _VGGRKAAC_ 0 0 0 ENST00000504011.5_1_4:186456572-186456608:-|nuORF ENST00000504011.5_1_4:186456572-186456608:-|nuORF ENST00000504011.5_1_4:186456572-186456608:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2091369628906 2 381.207973 760.401392 NaN NaN NaN NaN NaN NaN NaN 135.42 1 135.42 134.92 135.92 0 0 0 0 0.2396 1 26824 26824 0 0 1 49156 10651 32734 32755 48239 48239 0.011607508511474407 VGGRPAPK 8 Unmodified _VGGRPAPK_ 0 0 0 ENST00000517489.1_1_8:99057570-99057744:-|nuORF ENST00000517489.1_1_8:99057570-99057744:-|nuORF ENST00000517489.1_1_8:99057570-99057744:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 391.10870361328125 2 391.237587 780.460622 NaN NaN NaN NaN NaN NaN NaN 173.12 1 168.23 167.73 168.73 -4.881 0 0 0 0.21486 1 34398 34398 0.79363 0 1 49157 10796 32735 32756 48240 48240 0.06160970136988908 VGGRRPGL 8 Unmodified _VGGRRPGL_ 0 0 0 ENST00000467586.5_1_17:74079731-74084011:-|nuORF ENST00000467586.5_1_17:74079731-74084011:-|nuORF ENST00000467586.5_1_17:74079731-74084011:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 408.2235412597656 2 406.248486 810.48242 -0.18377 -7.4654E-05 0.32845 0.00013343 0.14469 5.878E-05 406.24852188359733 142.65 1.304 137.76 137.24 138.54 -4.8982 108 36 4 0 0 0 8448 1 27590 27590 0.0082765 0 1 58405000 49158 10153 32736 32757 48241 48241 0.06959774885569914 VGGRVPLRDL 10 Unmodified _VGGRVPLRDL_ 0 0 0 SZT2|p.L1644Ffs*4|1|0.36|ENSG00000198198|chr1:43431727-43431728|-/T|frameshift_variant;SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant;SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant;nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2 SZT2|p.L1644Ffs*4|1|0.36|ENSG00000198198|chr1:43431727-43431728|-/T|frameshift_variant SZT2|p.L1644Ffs*4|1|0.36|ENSG00000198198|chr1:43431727-43431728|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.2119140625 3 361.220735 1080.64038 NaN NaN NaN NaN NaN NaN NaN 106.28 1 102.19 101.69 102.69 -4.0913 0 0 0 0.22588 1 20437 20437 0.69767 0.07084 1 49159 7437 32737 32758 48242 48242 0.10328229354126961 VGGSCDST 8 Unmodified _VGGSCDST_ 0 0 0 REV__ENST00000565875.5_1_15:66857042-66858257:-|nuORF REV__ENST00000565875.5_1_15:66857042-66858257:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 363.1417236328125 2 363.142161 724.269769 NaN NaN NaN NaN NaN NaN NaN 138.93 1 134.08 133.58 134.58 -4.8492 0 0 0 0.21486 1 26783 26783 0.79363 0 1 + 49160 23117 32738 32759 48243 48243 -0.10339524027267544 VGGSGETI 8 Unmodified _VGGSGETI_ 0 0 0 REV__nc|ENSG00000233718|P40205|MYCNOS REV__nc|ENSG00000233718|P40205|MYCNOS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2010192871094 2 360.182143 718.349734 NaN NaN NaN NaN NaN NaN NaN 72.823 1 69.284 68.784 69.784 -3.5385 0 0 0 0.21486 1 13810 13810 2.5775 0 1 + 49161 24283 32739 32760 48244 48244 -0.020707143617642032 VGGSGSGC 8 Unmodified _VGGSGSGC_ 0 0 0 ENST00000590127.5_1_18:44407908-44497416:-|nuORF ENST00000590127.5_1_18:44407908-44497416:-|nuORF ENST00000590127.5_1_18:44407908-44497416:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7734375 1 623.245351 622.238075 0.51443 0.00032061 0.66135 0.00041219 1.1758 0.0007328 623.2459327270982 126.27 0.1055 121.47 121.4 121.5 -4.7958 4 2 2 0 0 0 0.89951 1 24240 24240 0 0 1 828280 49162 11596 32740 32761 48245 48245 -0.08815471990544665 VGGSGSGC 8 Unmodified _VGGSGSGC_ 0 0 0 ENST00000590127.5_1_18:44407908-44497416:-|nuORF ENST00000590127.5_1_18:44407908-44497416:-|nuORF ENST00000590127.5_1_18:44407908-44497416:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7528076171875 1 623.245351 622.238075 0.56316 0.00035099 1.1093 0.00069135 1.6724 0.0010423 623.2446902783179 151.03 0.18176 145.85 145.75 145.93 -5.1759 6 4 2 0 0 0 1.028 1 29266 29266 0.79363 0 1 1230300 49163 11596 32740 32761 48246 48246 -0.08815471990544665 VGGSKRGSLKY 11 Unmodified _VGGSKRGSLKY_ 0 0 0 REV__ENSG00000065320|ENST00000173229|NTN1 REV__ENSG00000065320|ENST00000173229|NTN1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3317260742188 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 127.68 0.99999 127.68 127.18 128.18 0 0 0 0 0.23018 1 25205 25205 8.1555 0.8663 1 + 49164 14184 32741 32762 48247 48247 0.0765590814596635 VGGSLGGV 8 Unmodified _VGGSLGGV_ 0 0 0 tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1 tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1 tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.18280029296875 2 323.181946 644.34934 NaN NaN NaN NaN NaN NaN NaN 38.677 1 36.273 35.773 36.773 -2.4049 0 0 0 0.21486 1 6889 6889 0.79363 0 1 49165 26314 32742 32763 48248 48248 0.012939107090573998 VGGSPGGP 8 Unmodified _VGGSPGGP_ 0 0 0 ENST00000459998.1_1_7:30325231-30328375:+|nuORF;ENSG00000180233|ENST00000323037|ZNRF2 ENST00000459998.1_1_7:30325231-30328375:+|nuORF ENST00000459998.1_1_7:30325231-30328375:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.15960693359375 2 314.158471 626.30239 NaN NaN NaN NaN NaN NaN NaN 49.593 1 46.594 46.094 47.094 -2.999 0 0 0 0.21486 1 9072 9072 6.3541 0 1 49166 6662 32743 32764 48249 48249 -0.02570948842094367 VGGSPGGP 8 Unmodified _VGGSPGGP_ 0 0 0 ENST00000459998.1_1_7:30325231-30328375:+|nuORF;ENSG00000180233|ENST00000323037|ZNRF2 ENST00000459998.1_1_7:30325231-30328375:+|nuORF ENST00000459998.1_1_7:30325231-30328375:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.15972900390625 2 314.158471 626.30239 NaN NaN NaN NaN NaN NaN NaN 88.71 1 84.96 84.46 85.46 -3.7501 0 0 0 0.21486 1 16984 16984 2.8892 0 1 49167 6662 32743 32764 48250 48250 -0.02570948842094367 VGGSQQPRAG 10 Unmodified _VGGSQQPRAG_ 0 0 0 REV__ENST00000587992.1_1_19:10445574-10446063:-|nuORF REV__ENST00000587992.1_1_19:10445574-10446063:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7222900390625 2 478.749047 955.483542 NaN NaN NaN NaN NaN NaN NaN 21.794 1 20.41 19.91 20.91 -1.3847 0 0 0 0.22588 1 3444 3444 10.824 0.75 1 + 49168 23281 32744 32765 48251 48251 0.004019444638174718 VGGSSLSI 8 Unmodified _VGGSSLSI_ 0 0 0 REV__nc|ENSG00000166833|Q8IVL1-5|NAV2 REV__nc|ENSG00000166833|Q8IVL1-5|NAV2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20159912109375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 83.157 1 79.459 78.959 79.959 -3.6985 0 0 0 0.21486 1 15869 15869 2.5775 0 1 + 49169 17878 32745 32766 48252 48252 0.015661625349594033 VGGVFASL 8 Unmodified _VGGVFASL_ 0 0 0 FGF16|p.R172Gfs*20|1|0.33|ENSG00000196468|chrX:77456409-77456409|C/-|frameshift_variant;FGF16|p.L187Ffs*9|1|0.24|ENSG00000196468|chrX:77456453-77456454|-/T|frameshift_variant;ENSG00000196468|ENST00000439435|FGF16 FGF16|p.R172Gfs*20|1|0.33|ENSG00000196468|chrX:77456409-77456409|C/-|frameshift_variant FGF16|p.R172Gfs*20|1|0.33|ENSG00000196468|chrX:77456409-77456409|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21258544921875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 36.351 1 36.351 35.851 36.851 0 0 0 0 0.23711 1 6698 6698 0.0082765 0 1 49170 7270 32746 32767 48253 48253 0.027670567772474897 VGGVFEAQI 9 Unmodified _VGGVFEAQI_ 0 0 0 REV__ENSG00000165934|ENST00000298875|CPSF2 REV__ENSG00000165934|ENST00000298875|CPSF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2484130859375 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 13.556 1 12.346 11.846 12.846 -1.2106 0 0 0 0.23508 1 1725 1725 1.8442 1.0506 1 + 49171 17810 32747 32768 48254 48254 0.01858096006139931 VGGVHLDGSV 10 Unmodified _VGGVHLDGSV_ 0 0 0 REV__nc|ENSG00000101311|Q9BQL6-2|FERMT1 REV__nc|ENSG00000101311|Q9BQL6-2|FERMT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.83465576171875 3 313.834658 938.482145 NaN NaN NaN NaN NaN NaN NaN 18.154 1 18.154 17.654 18.654 0 0 0 0 0.22588 1 2905 2905 0.77653 0 1 + 49172 14776 32748 32769 48255 48255 0.01044310375061741 VGGVLHPA 8 Unmodified _VGGVLHPA_ 0 0 0 REV__ENST00000292211.4_1_1:154528396-154530715:-|nuORF REV__ENST00000292211.4_1_1:154528396-154530715:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21881103515625 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 57.672 1 54.467 53.967 54.967 -3.2052 0 0 0 0.23899 1 10749 10749 1.3295 0.70271 1 + 49173 20357 32749 32770 48256 48256 0.038898788713822796 VGGVLHPA 8 Unmodified _VGGVLHPA_ 0 0 0 REV__ENST00000292211.4_1_1:154528396-154530715:-|nuORF REV__ENST00000292211.4_1_1:154528396-154530715:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2198791503906 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 57.893 1 54.688 54.188 55.188 -3.2052 0 0 0 0.21486 1 10794 10794 11.114 4.7604 1 + 49174 20357 32749 32770 48257 48257 0.038898788713822796 VGGVMSVL 8 Unmodified _VGGVMSVL_ 0 0 0 ENST00000514705.5_1_5:176074565-176079944:+|nuORF;nc|ENSG00000048140|Q96FV3-3|TSPAN17;nc|ENSG00000048140|Q96FV3|TSPAN17;ENSG00000048140|ENST00000508164|TSPAN17 ENST00000514705.5_1_5:176074565-176079944:+|nuORF ENST00000514705.5_1_5:176074565-176079944:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2139587402344 2 381.214932 760.415311 NaN NaN NaN NaN NaN NaN NaN 45.515 1 42.648 42.148 43.148 -2.8666 0 0 0 0.22676 1 8261 8261 1.7423 0 1 49175 1225 32750 32771 48258 48258 0.025519835596014673 VGGVRPGG 8 Unmodified _VGGVRPGG_ 0 0 0 REV__nc|ENSG00000067840|Q76G19-2|PDZD4 REV__nc|ENSG00000067840|Q76G19-2|PDZD4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 349.486572265625 2 349.700838 697.387122 NaN NaN NaN NaN NaN NaN NaN 62.921 1 62.921 62.421 63.421 0 0 0 0 0.2396 1 12092 12092 0 0 1 + 49176 14217 32751 32772 48259 48259 0.026324216945340595 VGGWELRY 8 Unmodified _VGGWELRY_ 0 0 0 REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2536926269531 2 490.253434 978.492316 NaN NaN NaN NaN NaN NaN NaN 28.13 1 26.133 25.633 26.633 -1.9962 0 0 0 0.21486 1 4734 4734 5.7604 0 1 + 49177 14841 32752 32773 48260 48260 0.002209181002854166 VGGWTGQG 8 Unmodified _VGGWTGQG_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP nc|ENSG00000152556|P08237-2|PFKM;nc|ENSG00000067057|Q01813-2|PFKP nc|ENSG00000152556|P08237-2|PFKM MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2161560058594 2 381.182478 760.350402 NaN NaN NaN NaN NaN NaN NaN 33.352 1 31.035 30.535 31.535 -2.3175 0 0 0 0.2396 1 6098 6098 0 0 1 49178 4930;1382 32753 32774 48261 48261 -0.039358749220355094 VGGWYKVLD 9 Unmodified _VGGWYKVLD_ 0 0 0 MPV17|p.G95Afs*7|1|0.1|ENSG00000115204|chr2:27312585-27312585|C/-|frameshift_variant;ENSG00000115204|ENST00000380044|MPV17 MPV17|p.G95Afs*7|1|0.1|ENSG00000115204|chr2:27312585-27312585|C/-|frameshift_variant MPV17|p.G95Afs*7|1|0.1|ENSG00000115204|chr2:27312585-27312585|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 346.1858215332031 3 346.18692 1035.53893 NaN NaN NaN NaN NaN NaN NaN 78.196 1 74.43 73.93 74.93 -3.7664 0 0 0 0.23508 1 14824 14824 4.897 2.1618 1 49179 2828 32754 32775 48262 48262 0.022583579315551106 VGGYIVAA 8 Unmodified _VGGYIVAA_ 0 0 0 REV__ENST00000528902.1_1_17:72960370-72968856:-|nuORF REV__ENST00000528902.1_1_17:72960370-72968856:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2121276855469 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 12.752 1 12.752 12.252 13.252 0 0 0 0 0.2396 1 1798 1798 0 0 1 + 49180 22731 32755 32776 48263 48263 0.027670567772247523 VGHAGPPD 8 Unmodified _VGHAGPPD_ 0 0 0 REV__ENST00000498830.5_1_20:62608707-62611232:-|nuORF REV__ENST00000498830.5_1_20:62608707-62611232:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2120361328125 2 375.182478 748.350402 NaN NaN NaN NaN NaN NaN NaN 87.07 1 87.07 86.57 87.57 0 0 0 0 0.2396 1 16994 16994 0 0 1 + 49181 22421 32756 32777 48264 48264 -0.03383874922053565 VGHAGPPD 8 Unmodified _VGHAGPPD_ 0 0 0 REV__ENST00000498830.5_1_20:62608707-62611232:-|nuORF REV__ENST00000498830.5_1_20:62608707-62611232:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.20965576171875 2 375.182478 748.350402 NaN NaN NaN NaN NaN NaN NaN 28.107 1 26.351 25.851 26.851 -1.7552 0 0 0 0.2396 1 4732 4732 0 0 1 + 49182 22421 32756 32777 48265 48265 -0.03383874922053565 VGHARREALA 10 Unmodified _VGHARREALA_ 0 0 0 SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1;ENST00000530213.5_1_11:64809351-64812196:+|nuORF SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20233154296875 3 360.540468 1078.59957 -0.52315 -0.00018862 0.62116 0.00022395 0.098003 3.5334E-05 360.54065792533635 16.161 0.20509 14.939 14.819 15.024 -1.2219 8 5 2 0 0 0 0.88798 1 2293 2293 13.615 11.116 1 456780 49183 5875 32757 32778 48266 48266 0.06341888034535259 VGHARREALA 10 Unmodified _VGHARREALA_ 0 0 0 SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1;ENST00000530213.5_1_11:64809351-64812196:+|nuORF SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 3 360.540468 1078.59957 -2.1722 -0.00078316 1.2551 0.00045253 -0.91706 -0.00033064 360.54110965154916 16.235 0.31545 14.882 14.781 15.097 -1.3534 14 8 3 0 0 0 0.88798 1 2272 2272 13.615 6.0059 1 450040 49184 5875 32757 32778 48267 48267 0.06341888034535259 VGHARREALA 10 Unmodified _VGHARREALA_ 0 0 0 SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1;ENST00000530213.5_1_11:64809351-64812196:+|nuORF SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 360.540468 1078.59957 -0.34508 -0.00012442 0.48605 0.00017524 0.14097 5.0824E-05 360.5404963785246 14.961 0.17386 14.961 14.878 15.052 0 0.035154 -0.00025704 NaN 13.615 9 4 3 NaN NaN NaN NaN 0 NaN NaN 0 735640 49185 5875 32757 32778 0.06341888034535259 VGHARREALA 10 Unmodified _VGHARREALA_ 0 0 0 SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1;ENST00000530213.5_1_11:64809351-64812196:+|nuORF SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant SAC3D1|p.C371Afs*4|1|0.08|ENSG00000168061|chr11:65044622-65044622|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 360.540468 1078.59957 -0.71396 -0.00025741 0.7235 0.00026085 0.0095413 3.44E-06 360.5406906730793 16.138 0.17699 14.922 14.797 14.974 -1.2159 -0.0037852 -2.0906E-07 NaN 13.615 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 586980 49186 5875 32757 32778 0.06341888034535259 VGHDPAGP 8 Unmodified _VGHDPAGP_ 0 0 0 TEX2|p.S903Vfs*17|1|0.22|ENSG00000136478|chr17:64160898-64160899|-/C|frameshift_variant;ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2;TEX2|p.L796Cfs*29|1|0.25|ENSG00000136478|chr17:64188206-64188206|G/-|frameshift_variant TEX2|p.S903Vfs*17|1|0.22|ENSG00000136478|chr17:64160898-64160899|-/C|frameshift_variant TEX2|p.S903Vfs*17|1|0.22|ENSG00000136478|chr17:64160898-64160899|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21844482421875 2 375.182478 748.350402 NaN NaN NaN NaN NaN NaN NaN 86.873 1 86.873 86.373 87.373 0 0 0 0 0.23711 1 16955 16955 0.12286 0 1 49187 4013 32758 32779 48268 48268 -0.03383874922042196 VGHEEEDE 8 Unmodified _VGHEEEDE_ 0 0 0 REV__ENSG00000164236|ENST00000296657|ANKRD33B REV__ENSG00000164236|ENST00000296657|ANKRD33B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.0350646972656 3 315.126166 942.35667 NaN NaN NaN NaN NaN NaN NaN 26.14 1 26.14 25.64 26.64 0 0 0 0 0.21486 1 4567 4567 0.45834 0 1 + 49188 17663 32759 32780 48269 48269 -0.11681446271848017 VGHERVYSP 9 Unmodified _VGHERVYSP_ 0 0 0 REV__sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1 REV__sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.265869140625 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 99.976 1 95.679 95.179 96.179 -4.297 0 0 0 0.22962 1 19114 19114 14.838 0 1 + 49189 24703 32760 32781 48270 48270 3.401640651645721E-05 VGHEYTLP 8 Unmodified _VGHEYTLP_ 0 0 0 REV__nc|ENSG00000126785|Q9H4E5-2|RHOJ REV__nc|ENSG00000126785|Q9H4E5-2|RHOJ MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.232666015625 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 90.263 1 90.263 89.763 90.763 0 0 0 0 0.23366 1 17631 17631 1.3295 0.70271 1 + 49190 15865 32761 32782 48271 48271 -0.010864770279454206 VGHEYTLP 8 Unmodified _VGHEYTLP_ 0 0 0 REV__nc|ENSG00000126785|Q9H4E5-2|RHOJ REV__nc|ENSG00000126785|Q9H4E5-2|RHOJ MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2339172363281 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 129.96 1 129.96 129.46 130.46 0 0 0 0 0.23366 1 25678 25678 0.0082765 0 1 + 49191 15865 32761 32782 48272 48272 -0.010864770279454206 VGHEYTLP 8 Unmodified _VGHEYTLP_ 0 0 0 REV__nc|ENSG00000126785|Q9H4E5-2|RHOJ REV__nc|ENSG00000126785|Q9H4E5-2|RHOJ MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2302551269531 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 101.14 1 96.841 96.341 97.341 -4.297 0 0 0 0.23366 1 19352 19352 0.30703 0.055553 1 + 49192 15865 32761 32782 48273 48273 -0.010864770279454206 VGHHHSRS 8 Unmodified _VGHHHSRS_ 0 0 0 REV__nc|ENSG00000170579|O14490-7|DLGAP1 REV__nc|ENSG00000170579|O14490-7|DLGAP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.2510070800781 3 306.154725 915.442346 NaN NaN NaN NaN NaN NaN NaN 19.619 1 17.984 17.484 18.484 -1.6351 0 0 0 0.21486 1 2972 2972 0.45834 0 1 + 49193 24162 32762 32783 48274 48274 -0.01875771785012148 VGHHINDKY 9 Unmodified _VGHHINDKY_ 0 0 0 REV__SETD7|p.R115H|1|0.37|ENSG00000145391|chr4:139533193-139533193|C/T|missense_variant REV__SETD7|p.R115H|1|0.37|ENSG00000145391|chr4:139533193-139533193|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2662353515625 2 541.772522 1081.53049 0.36155 0.00019588 1.1129 0.00060291 1.4744 0.00079879 542.274925978769 29.542 0.76468 29.542 28.985 29.749 0 26 21 2 0 0 0 0.62102 1 5276 5276 11.64 0.81637 1 1260700 + 49194 24606 32763 32784 48275 48275 -0.007011959850387939 VGHIFFLV 8 Unmodified _VGHIFFLV_ 0 0 0 REV__ENSG00000127220|ENST00000247706|ABHD8 REV__ENSG00000127220|ENST00000247706|ABHD8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1838073730469 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 99.551 1 95.418 94.918 95.918 -4.1326 0 0 0 0.21486 1 19558 19558 0.45834 0 1 + 49195 15880 32764 32785 48276 48276 0.06467884490712095 VGHIFFLV 8 Unmodified _VGHIFFLV_ 0 0 0 REV__ENSG00000127220|ENST00000247706|ABHD8 REV__ENSG00000127220|ENST00000247706|ABHD8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.2049865722656 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 85.055 1 81.146 80.646 81.646 -3.9093 0 0 0 0.21486 1 16172 16172 0.45834 0 1 + 49196 15880 32764 32785 48277 48277 0.06467884490712095 VGHIFFLV 8 Unmodified _VGHIFFLV_ 0 0 0 REV__ENSG00000127220|ENST00000247706|ABHD8 REV__ENSG00000127220|ENST00000247706|ABHD8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.1965026855469 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 85.269 1 81.36 80.86 81.86 -3.9093 0 0 0 0.21486 1 16215 16215 0.45834 0 1 + 49197 15880 32764 32785 48278 48278 0.06467884490712095 VGHIFFLV 8 Unmodified _VGHIFFLV_ 0 0 0 REV__ENSG00000127220|ENST00000247706|ABHD8 REV__ENSG00000127220|ENST00000247706|ABHD8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2064514160156 3 311.184851 930.532724 NaN NaN NaN NaN NaN NaN NaN 26.163 1 24.241 23.741 24.741 -1.9222 0 0 0 0.21486 1 4323 4323 0.45834 0 1 + 49198 15880 32764 32785 48279 48279 0.06467884490712095 VGHIGSLGTS 10 Unmodified _VGHIGSLGTS_ 0 0 0 REV__ENST00000503833.6_1_20:57571689-57571740:-|nuORF REV__ENST00000503833.6_1_20:57571689-57571740:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.2455139160156 2 464.248349 926.482145 NaN NaN NaN NaN NaN NaN NaN 156.53 1 151.26 150.76 151.76 -5.2712 0 0 0 0.22588 1 30359 30359 3.9444 1.8846 1 + 49199 20021 32765 32786 48280 48280 0.015963103750550545 VGHKLLKQK 9 Unmodified _VGHKLLKQK_ 0 0 0 REV__ENST00000466781.5_1_22:26849201-26862270:-|nuORF REV__ENST00000466781.5_1_22:26849201-26862270:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.8493957519531 3 350.897593 1049.67095 NaN NaN NaN NaN NaN NaN NaN 16.676 1 15.46 14.96 15.96 -1.2159 0 0 0 0.1963 1 2636 2636 0 0 1 + 49200 14666 32766 32787 48281 48281 0.1481000773917458 VGHLGLALEEL 11 Unmodified _VGHLGLALEEL_ 0 0 0 nc|ENSG00000125741|Q9H6K4-2|OPA3 nc|ENSG00000125741|Q9H6K4-2|OPA3 nc|ENSG00000125741|Q9H6K4-2|OPA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3298950195312 2 575.826963 1149.63937 0.22418 0.00012909 -0.32493 -0.0001871 -0.10075 -5.8014E-05 576.3282188814253 118.21 0.47667 113.71 113.42 113.9 -4.502 20 13 2 0 0 0 0.68099 1 23324 23324 13.042 1.4022 1 10435000 49201 12306 32767 32788 48282 48282 0.07053970194556314 VGHLGPLG 8 Unmodified _VGHLGPLG_ 0 0 0 REV__nc|ENSG00000169031|Q01955-5|COL4A3 REV__nc|ENSG00000169031|Q01955-5|COL4A3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2201843261719 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 40.752 1 40.752 40.252 41.252 0 0 0 0 0.21486 1 7585 7585 6.3541 0 1 + 49202 18070 32768 32789 48283 48283 0.038898788713822796 VGHLGPLG 8 Unmodified _VGHLGPLG_ 0 0 0 REV__nc|ENSG00000169031|Q01955-5|COL4A3 REV__nc|ENSG00000169031|Q01955-5|COL4A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21844482421875 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 43.045 1 40.439 39.939 40.939 -2.606 0 0 0 0.23294 1 7759 7759 0.62683 0 1 + 49203 18070 32768 32789 48284 48284 0.038898788713822796 VGHLGPLG 8 Unmodified _VGHLGPLG_ 0 0 0 REV__nc|ENSG00000169031|Q01955-5|COL4A3 REV__nc|ENSG00000169031|Q01955-5|COL4A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2192077636719 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 43.303 1 40.697 40.197 41.197 -2.606 0 0 0 0.23294 1 7812 7812 0.62683 0 1 + 49204 18070 32768 32789 48285 48285 0.038898788713822796 VGHLGPLG 8 Unmodified _VGHLGPLG_ 0 0 0 REV__nc|ENSG00000169031|Q01955-5|COL4A3 REV__nc|ENSG00000169031|Q01955-5|COL4A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21905517578125 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 50.242 1 47.236 46.736 47.736 -3.0068 0 0 0 0.23294 1 9230 9230 0.68139 0 1 + 49205 18070 32768 32789 48286 48286 0.038898788713822796 VGHLHHCL 8 Unmodified _VGHLHHCL_ 0 0 0 ENST00000476245.5_1_3:125869637-125874346:-|nuORF ENST00000476245.5_1_3:125869637-125874346:-|nuORF ENST00000476245.5_1_3:125869637-125874346:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2326965332031 2 458.234522 914.45449 NaN NaN NaN NaN NaN NaN NaN 14.348 1 13.137 12.637 13.637 -1.2106 0 0 0 0.21486 1 1893 1893 0.79363 0 1 49206 10284 32769 32790 48287 48287 -0.006158713661875481 VGHLKKELA 9 Unmodified _VGHLKKELA_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;HLTF|p.M148Ifs*3|1|0.03|ENSG00000071794|chr3:149074300-149074301|-/ACTTA|frameshift_variant ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.0158386230469 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 133.7 1 128.88 128.38 129.38 -4.8175 0 0 0 0.23508 1 25734 25734 5.2969 2.5617 1 49207 1453 32770 32791 48288 48288 0.1000603957684234 VGHLQKRKW 9 Unmodified _VGHLQKRKW_ 0 0 0 ENST00000266771.9_1_12:129294552-129294612:-|nuORF ENST00000266771.9_1_12:129294552-129294612:-|nuORF ENST00000266771.9_1_12:129294552-129294612:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.320556640625 2 576.343449 1150.67235 NaN NaN NaN NaN NaN NaN NaN 154.87 1 149.59 149.09 150.09 -5.2854 0 0 0 0.19632 1 30037 30037 0.073264 0.029476 1 49208 8377 32771 32792 48289 48289 0.10303641827931642 VGHLQKRKW 9 Unmodified _VGHLQKRKW_ 0 0 0 ENST00000266771.9_1_12:129294552-129294612:-|nuORF ENST00000266771.9_1_12:129294552-129294612:-|nuORF ENST00000266771.9_1_12:129294552-129294612:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.327880859375 2 576.343449 1150.67235 NaN NaN NaN NaN NaN NaN NaN 140.06 1 135.21 134.71 135.71 -4.8492 0 0 0 0.19624 1 27008 27008 0 0 1 49209 8377 32771 32792 48290 48290 0.10303641827931642 VGHLSTSL 8 Unmodified _VGHLSTSL_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2;DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 407.2263488769531 2 407.226885 812.439217 NaN NaN NaN NaN NaN NaN NaN 120.9 1 120.9 120.4 121.4 0 0 0 0 0.21486 1 23832 23832 2.8892 0 1 49210 1282 32772 32793 48291 48291 0.025495403176250875 VGHLYYLGGS 10 Unmodified _VGHLYYLGGS_ 0 0 0 ENST00000519889.5_1_8:95905124-95906171:-|nuORF;CCNE2|p.R42Efs*38|1|0.07|ENSG00000175305|chr8:94893932-94893932|T/-|frameshift_variant ENST00000519889.5_1_8:95905124-95906171:-|nuORF ENST00000519889.5_1_8:95905124-95906171:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 55.207 1 52.072 51.572 52.572 -3.1352 0 0 0 0.22588 1 10198 10198 10.824 1.4408 1 49211 430 32773 32794 48292 48292 -0.0005883007379452465 VGHPPPRF 8 Unmodified _VGHPPPRF_ 0 0 0 REV__ENST00000474481.1_1_1:1425808-1431194:+|nuORF REV__ENST00000474481.1_1_1:1425808-1431194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7527770996094 2 453.750862 905.487171 NaN NaN NaN NaN NaN NaN NaN 121.89 1 121.89 121.39 122.39 0 0 0 0 0.21486 1 24028 24028 5.7604 0.52976 1 + 49212 22082 32774 32795 48293 48293 0.03064659028314054 VGHRCDDC 8 Unmodified _VGHRCDDC_ 0 0 0 ENST00000560847.2_1_15:50709738-50710245:+|nuORF ENST00000560847.2_1_15:50709738-50710245:+|nuORF ENST00000560847.2_1_15:50709738-50710245:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.04461669921875 3 302.118183 903.33272 NaN NaN NaN NaN NaN NaN NaN 49.261 1 49.261 48.761 49.761 0 0 0 0 0.21486 1 9312 9312 0.45834 0 1 49213 11294 32775 32796 48294 48294 -0.12281281510877307 VGHRCDDC 8 Unmodified _VGHRCDDC_ 0 0 0 ENST00000560847.2_1_15:50709738-50710245:+|nuORF ENST00000560847.2_1_15:50709738-50710245:+|nuORF ENST00000560847.2_1_15:50709738-50710245:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.0323181152344 3 302.118183 903.33272 NaN NaN NaN NaN NaN NaN NaN 52.362 1 49.266 48.766 49.766 -3.0954 0 0 0 0.21486 1 9664 9664 0.45834 0 1 49214 11294 32775 32796 48295 48295 -0.12281281510877307 VGHRGKRR 8 Unmodified _VGHRGKRR_ 0 0 0 ENST00000248450.8_1_2:219128952-219129252:-|nuORF ENST00000248450.8_1_2:219128952-219129252:-|nuORF ENST00000248450.8_1_2:219128952-219129252:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 322.53375244140625 3 322.533648 964.579114 NaN NaN NaN NaN NaN NaN NaN 28.281 1 26.285 25.785 26.785 -1.9962 0 0 0 0.2396 1 4766 4766 0 0 1 49215 8213 32776 32797 48296 48296 0.09540762165363503 VGHRIFYKVDN 11 Unmodified _VGHRIFYKVDN_ 0 0 0 REV__nc|ENSG00000137494|Q8N9B4|ANKRD42 REV__nc|ENSG00000137494|Q8N9B4|ANKRD42 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.1492614746094 3 449.910449 1346.70952 NaN NaN NaN NaN NaN NaN NaN 15.631 1 14.415 13.915 14.915 -1.2159 0 0 0 0.23698 1 2419 2419 0.50596 0.27011 1 + 49216 16394 32777 32798 48297 48297 0.050032685830274204 VGHRMNIE 8 Unmodified _VGHRMNIE_ 0 0 0 nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3;ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3 nc|ENSG00000162105|Q9UPX8-4|SHANK2;ENST00000414786.6_1_22:51113069-51169737:+|nuORF ENST00000414786.6_1_22:51113069-51169737:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7438659667969 2 478.242544 954.470534 0.12762 6.1034E-05 -0.49609 -0.00023725 -0.36847 -0.00017622 478.24220017000096 152.12 0.74765 147.37 147.06 147.81 -4.7523 44 20 3 0 0 0 0.66265 1 30271 30271 18.135 0 1 4582200 49217 9607;5314 32778 32799 48298 48298 -0.008522099199467448 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2099304199219 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 114.48 1 110 109.5 110.5 -4.4726 0 0 0 0.23366 1 22559 22559 0.12286 0 1 49218 6513 32779 32800 48299 48299 -0.02813052827912088 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2138366699219 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 119.2 1 114.69 114.19 115.19 -4.502 0 0 0 0.23749 1 23506 23506 0.12286 0 1 49219 6513 32779 32800 48300 48300 -0.02813052827912088 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.22296142578125 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 157.77 1 152.98 152.48 153.48 -4.7885 0 0 0 0.21486 1 31378 31378 5.7604 0 1 49220 6513 32779 32800 48301 48301 -0.02813052827912088 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2085876464844 2 381.188094 760.361636 -0.35285 -0.0001345 0.22594 8.6125E-05 -0.12692 -4.8379E-05 381.18832690779107 57.058 0.4912 54.164 53.993 54.484 -2.8944 18 13 2 0 0 0 0.82854 1 11003 11003 3.5871 2.9057 1 691810 49221 6513 32779 32800 48302 48302 -0.02813052827912088 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2103271484375 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 85.66 1 81.71 81.21 82.21 -3.9503 0 0 0 0.21486 1 16296 16296 5.7604 0 1 49222 6513 32779 32800 48303 48303 -0.02813052827912088 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2098693847656 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 86.599 1 82.649 82.149 83.149 -3.9503 0 0 0 0.23749 1 16486 16486 0.12286 0 1 49223 6513 32779 32800 48304 48304 -0.02813052827912088 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.20977783203125 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 105.18 1 100.8 100.3 101.3 -4.3764 0 0 0 0.23366 1 20161 20161 0.12286 0 1 49224 6513 32779 32800 48305 48305 -0.02813052827912088 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2101135253906 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 113.58 1 109.06 108.56 109.56 -4.5259 0 0 0 0.21486 1 21806 21806 5.7604 0 1 49225 6513 32779 32800 48306 48306 -0.02813052827912088 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21075439453125 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 114.56 1 110 109.5 110.5 -4.555 0 0 0 0.23749 1 21994 21994 0.12286 0 1 49226 6513 32779 32800 48307 48307 -0.02813052827912088 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2109375 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 125.78 1 121.02 120.52 121.52 -4.7681 0 0 0 0.21486 1 24140 24140 5.7604 0 1 49227 6513 32779 32800 48308 48308 -0.02813052827912088 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2184753417969 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 125.69 1 121.04 120.54 121.54 -4.6495 0 0 0 0.23749 1 24185 24185 0.12286 0 1 49228 6513 32779 32800 48309 48309 -0.02813052827912088 VGHTKDVLS 9 Unmodified _VGHTKDVLS_ 0 0 0 ENSG00000204628|ENST00000512805|RACK1;ENST00000502890.5_1_5:180667315-180668686:-|nuORF;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000507261.1_1_5:180668485-180669312:-|nuORF ENSG00000204628|ENST00000512805|RACK1;ENST00000507261.1_1_5:180668485-180669312:-|nuORF ENSG00000204628|ENST00000512805|RACK1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7330017089844 2 478.263999 954.513445 NaN NaN NaN NaN NaN NaN NaN 51.862 1 48.98 48.48 49.48 -2.8824 0 0 0 0.19632 1 9858 9858 0.073264 0 1 49229 7599;10695 32780 32801 48310 48310 0.03436883409131042 VGHVALPG 8 Unmodified _VGHVALPG_ 0 0 0 REV__ENST00000389044.8_1_2:230723916-230724018:-|nuORF REV__ENST00000389044.8_1_2:230723916-230724018:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21917724609375 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 54.529 1 54.529 54.029 55.029 0 0 0 0 0.23711 1 10399 10399 0.0082765 0 1 + 49230 21190 32781 32802 48311 48311 0.038898788713822796 VGHVALPG 8 Unmodified _VGHVALPG_ 0 0 0 REV__ENST00000389044.8_1_2:230723916-230724018:-|nuORF REV__ENST00000389044.8_1_2:230723916-230724018:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.216064453125 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 61.553 1 58.184 57.684 58.684 -3.3694 0 0 0 0.23294 1 11474 11474 0.62683 0.50396 1 + 49231 21190 32781 32802 48312 48312 0.038898788713822796 VGHVALPG 8 Unmodified _VGHVALPG_ 0 0 0 REV__ENST00000389044.8_1_2:230723916-230724018:-|nuORF REV__ENST00000389044.8_1_2:230723916-230724018:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2200927734375 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 61.589 1 58.219 57.719 58.719 -3.3694 0 0 0 0.21486 1 11481 11481 11.114 4.7604 1 + 49232 21190 32781 32802 48313 48313 0.038898788713822796 VGHVALPG 8 Unmodified _VGHVALPG_ 0 0 0 REV__ENST00000389044.8_1_2:230723916-230724018:-|nuORF REV__ENST00000389044.8_1_2:230723916-230724018:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.20428466796875 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 61.69 1 58.321 57.821 58.821 -3.3694 0 0 0 0.21486 1 11504 11504 6.3541 0 1 + 49233 21190 32781 32802 48314 48314 0.038898788713822796 VGHVALPG 8 Unmodified _VGHVALPG_ 0 0 0 REV__ENST00000389044.8_1_2:230723916-230724018:-|nuORF REV__ENST00000389044.8_1_2:230723916-230724018:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21343994140625 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 78.318 1 74.659 74.159 75.159 -3.6588 0 0 0 0.23711 1 14918 14918 0.12286 0 1 + 49234 21190 32781 32802 48315 48315 0.038898788713822796 VGHVEPQYD 9 Unmodified _VGHVEPQYD_ 0 0 0 REV__nc|ENSG00000163629|Q12923-2|PTPN13 REV__nc|ENSG00000163629|Q12923-2|PTPN13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2623291015625 2 522.243264 1042.47197 NaN NaN NaN NaN NaN NaN NaN 125.56 1 125.56 125.06 126.06 0 0 0 0 0.19656 1 24765 24765 0.029283 0 1 + 49235 17593 32782 32803 48316 48316 -0.04756297350195382 VGHVEPQYD 9 Unmodified _VGHVEPQYD_ 0 0 0 REV__nc|ENSG00000163629|Q12923-2|PTPN13 REV__nc|ENSG00000163629|Q12923-2|PTPN13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2566528320312 2 522.243264 1042.47197 NaN NaN NaN NaN NaN NaN NaN 147.27 1 142.58 142.08 143.08 -4.6868 0 0 0 0.22251 1 29216 29216 16.942 2.3606 1 + 49236 17593 32782 32803 48317 48317 -0.04756297350195382 VGHVGAPI 8 Unmodified _VGHVGAPI_ 0 0 0 ENST00000477184.5_1_7:102122979-102123225:-|nuORF ENST00000477184.5_1_7:102122979-102123225:-|nuORF ENST00000477184.5_1_7:102122979-102123225:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2176208496094 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 51.268 1 51.268 50.768 51.768 0 0 0 0 0.23711 1 9722 9722 0.0082765 0 1 49237 10300 32783 32804 48318 48318 0.03889878871370911 VGHVGAPI 8 Unmodified _VGHVGAPI_ 0 0 0 ENST00000477184.5_1_7:102122979-102123225:-|nuORF ENST00000477184.5_1_7:102122979-102123225:-|nuORF ENST00000477184.5_1_7:102122979-102123225:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2171936035156 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 132.11 1 132.11 131.61 132.61 0 0 0 0 0.21486 1 26114 26114 2.8892 0 1 49238 10300 32783 32804 48319 48319 0.03889878871370911 VGHVGAPI 8 Unmodified _VGHVGAPI_ 0 0 0 ENST00000477184.5_1_7:102122979-102123225:-|nuORF ENST00000477184.5_1_7:102122979-102123225:-|nuORF ENST00000477184.5_1_7:102122979-102123225:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.218505859375 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 56.316 1 53.422 52.922 53.922 -2.8944 0 0 0 0.23711 1 10787 10787 0.12286 0.058877 1 49239 10300 32783 32804 48320 48320 0.03889878871370911 VGHVGAPI 8 Unmodified _VGHVGAPI_ 0 0 0 ENST00000477184.5_1_7:102122979-102123225:-|nuORF ENST00000477184.5_1_7:102122979-102123225:-|nuORF ENST00000477184.5_1_7:102122979-102123225:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2168273925781 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 51.348 1 48.303 47.803 48.803 -3.0453 0 0 0 0.23711 1 9427 9427 0.12286 0 1 49240 10300 32783 32804 48321 48321 0.03889878871370911 VGHVGAPI 8 Unmodified _VGHVGAPI_ 0 0 0 ENST00000477184.5_1_7:102122979-102123225:-|nuORF ENST00000477184.5_1_7:102122979-102123225:-|nuORF ENST00000477184.5_1_7:102122979-102123225:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21881103515625 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 54.308 1 51.172 50.672 51.672 -3.1352 0 0 0 0.23711 1 10014 10014 0.0082765 0 1 49241 10300 32783 32804 48322 48322 0.03889878871370911 VGHVGAPI 8 Unmodified _VGHVGAPI_ 0 0 0 ENST00000477184.5_1_7:102122979-102123225:-|nuORF ENST00000477184.5_1_7:102122979-102123225:-|nuORF ENST00000477184.5_1_7:102122979-102123225:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21893310546875 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 63.898 1 60.641 60.141 61.141 -3.2567 0 0 0 0.23711 1 11990 11990 0.0082765 0 1 49242 10300 32783 32804 48323 48323 0.03889878871370911 VGHVWLPRRIP 11 Unmodified _VGHVWLPRRIP_ 0 0 0 REV__ENST00000355451.7_1_7:44424710-44424929:-|nuORF REV__ENST00000355451.7_1_7:44424710-44424929:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 444.031005859375 3 443.934929 1328.78296 NaN NaN NaN NaN NaN NaN NaN 178.98 1 174.07 173.57 174.57 -4.9088 0 0 0 0.23698 1 35709 35709 0.094841 0 1 + 49243 20793 32784 32805 48324 48324 0.13171861816158525 VGIAKHIQKL 10 Unmodified _VGIAKHIQKL_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.4854431152344 3 369.572998 1105.69716 0.20302 7.503E-05 -1.4802 -0.00054703 -1.2771 -0.000472 369.9064955235145 78.582 0.14331 78.582 78.47 78.614 0 5 3 2 0 0 0 0.53029 1 15289 15289 0.013265 0 1 393730 49244 1843 32785 32806 48325 48325 0.14854276910659792 VGIANLSEA 9 Unmodified _VGIANLSEA_ 0 0 0 REV__ENSG00000072274|ENST00000360110|TFRC REV__ENSG00000072274|ENST00000360110|TFRC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23590087890625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 62.792 1 62.792 62.292 63.292 0 0 0 0 0.23508 1 12063 12063 10.824 1.4765 1 + 49245 14283 32786 32807 48326 48326 0.019015056264720442 VGIANLSEA 9 Unmodified _VGIANLSEA_ 0 0 0 REV__ENSG00000072274|ENST00000360110|TFRC REV__ENSG00000072274|ENST00000360110|TFRC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2281188964844 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 83.28 1 83.28 82.78 83.78 0 0 0 0 0.19679 1 16238 16238 0.073264 0 1 + 49246 14283 32786 32807 48327 48327 0.019015056264720442 VGIANLSEA 9 Unmodified _VGIANLSEA_ 0 0 0 REV__ENSG00000072274|ENST00000360110|TFRC REV__ENSG00000072274|ENST00000360110|TFRC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2160339355469 2 437.23745 872.460347 0.1778 7.7741E-05 -0.33328 -0.00014572 -0.15548 -6.798E-05 437.2372474331148 93.71 0.80979 89.566 89.115 89.925 -4.1435 60 23 3 0 0 0 0.46541 1 17786 17786 21.747 5.8995 1 17346000 + 49247 14283 32786 32807 48328 48328 0.019015056264720442 VGIDNKIEQA 10 Unmodified _VGIDNKIEQA_ 0 0 0 ENSG00000166925|ENST00000300181|TSC22D4;ENST00000496728.1_1_7:100061616-100075106:-|nuORF;nc|ENSG00000166925|Q9Y3Q8-2|TSC22D4 ENSG00000166925|ENST00000300181|TSC22D4 ENSG00000166925|ENST00000300181|TSC22D4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7918701171875 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 14.878 1 13.667 13.167 14.167 -1.2106 0 0 0 0.22588 1 2009 2009 1.4819 0.68827 1 49248 5766 32787 32808 48329 48329 0.032325202637593975 VGIERCFEE 9 Unmodified _VGIERCFEE_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.91632080078125 3 361.170941 1080.491 -0.26448 -9.5523E-05 -1.4764 -0.00053324 -1.7409 -0.00062876 361.50451073127556 20.006 1.4601 20.006 19.208 20.668 0 100 41 3 0 0 0 0.82535 1 3130 3130 0.26902 0 1 1087300 + 49249 14286 32788 32809 48330 48330 -0.0460308405079104 VGIERCFEE 9 Unmodified _VGIERCFEE_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 361.170941 1080.491 -0.26448 -9.5523E-05 -1.4764 -0.00053324 -1.7409 -0.00062876 361.50451073127556 20.006 1.4601 20.006 19.208 20.668 0 -0.091575 -3.4512E-05 NaN 0.26902 100 41 3 NaN NaN NaN NaN 0 NaN NaN 0 1087300 + 49250 14286 32788 32809 -0.0460308405079104 VGIERCFEE 9 Unmodified _VGIERCFEE_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 361.170941 1080.491 -1.3181 -0.00047606 -1.3713 -0.00049527 -2.6894 -0.00097133 361.5037012779086 21.91 0.65641 20.189 19.951 20.607 -1.7211 0.091575 7.9392E-05 NaN 0.26902 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 586900 + 49251 14286 32788 32809 -0.0460308405079104 VGIFSSKIL 9 Unmodified _VGIFSSKIL_ 0 0 0 REV__nc|ENSG00000152822|Q13255-2|GRM1 REV__nc|ENSG00000152822|Q13255-2|GRM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.86798095703125 3 321.867299 962.580068 NaN NaN NaN NaN NaN NaN NaN 15.305 1 15.305 14.805 15.805 0 0 0 0 0.23508 1 2326 2326 0.26902 0 1 + 49252 17126 32789 32810 48331 48331 0.097281189710543 VGIFSSKIL 9 Unmodified _VGIFSSKIL_ 0 0 0 REV__nc|ENSG00000152822|Q13255-2|GRM1 REV__nc|ENSG00000152822|Q13255-2|GRM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.8681335449219 3 321.867299 962.580068 NaN NaN NaN NaN NaN NaN NaN 16.619 1 16.619 16.119 17.119 0 0 0 0 0.23508 1 2589 2589 0.26902 0 1 + 49253 17126 32789 32810 48332 48332 0.097281189710543 VGIFSSKIL 9 Unmodified _VGIFSSKIL_ 0 0 0 REV__nc|ENSG00000152822|Q13255-2|GRM1 REV__nc|ENSG00000152822|Q13255-2|GRM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.8556213378906 3 321.867299 962.580068 NaN NaN NaN NaN NaN NaN NaN 17.136 1 17.136 16.636 17.636 0 0 0 0 0.23508 1 2699 2699 0.26902 0 1 + 49254 17126 32789 32810 48333 48333 0.097281189710543 VGIFSSKIL 9 Unmodified _VGIFSSKIL_ 0 0 0 REV__nc|ENSG00000152822|Q13255-2|GRM1 REV__nc|ENSG00000152822|Q13255-2|GRM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.8678894042969 3 321.867299 962.580068 NaN NaN NaN NaN NaN NaN NaN 21.449 1 21.449 20.949 21.949 0 0 0 0 0.23508 1 3591 3591 1.1933 0 1 + 49255 17126 32789 32810 48334 48334 0.097281189710543 VGIFSSKIL 9 Unmodified _VGIFSSKIL_ 0 0 0 REV__nc|ENSG00000152822|Q13255-2|GRM1 REV__nc|ENSG00000152822|Q13255-2|GRM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.85858154296875 3 321.867299 962.580068 NaN NaN NaN NaN NaN NaN NaN 24.919 1 24.919 24.419 25.419 0 0 0 0 0.23508 1 4305 4305 0.26902 0 1 + 49256 17126 32789 32810 48335 48335 0.097281189710543 VGIFSSKIL 9 Unmodified _VGIFSSKIL_ 0 0 0 REV__nc|ENSG00000152822|Q13255-2|GRM1 REV__nc|ENSG00000152822|Q13255-2|GRM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.8684997558594 3 321.867299 962.580068 NaN NaN NaN NaN NaN NaN NaN 25.327 1 25.327 24.827 25.827 0 0 0 0 0.23508 1 4389 4389 0.26902 0 1 + 49257 17126 32789 32810 48336 48336 0.097281189710543 VGIFSSKIL 9 Unmodified _VGIFSSKIL_ 0 0 0 REV__nc|ENSG00000152822|Q13255-2|GRM1 REV__nc|ENSG00000152822|Q13255-2|GRM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.8679504394531 3 321.867299 962.580068 NaN NaN NaN NaN NaN NaN NaN 30.457 1 30.457 29.957 30.957 0 0 0 0 0.23508 1 5474 5474 0.26902 0 1 + 49258 17126 32789 32810 48337 48337 0.097281189710543 VGIGAFPT 8 Unmodified _VGIGAFPT_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2;ENST00000554281.1_1_14:105208270-105209529:+|nuORF;TTYH3-ADSSL1|1|fusion;ENSG00000185100|ENST00000330877|ADSS1;nc|ENSG00000185100|Q8N142-2|ADSS1 ENSG00000035687|ENST00000366535|ADSS2;TTYH3-ADSSL1|1|fusion ENSG00000035687|ENST00000366535|ADSS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2139892578125 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 41.616 1 41.616 41.116 42.116 0 0 0 0 0.23366 1 7767 7767 0.12286 0 1 49259 1168;6960 32790 32811 48338 48338 0.022150567772428076 VGIGEHLQSF 10 Unmodified _VGIGEHLQSF_ 0 0 0 ENST00000469518.1_1_7:72990936-72991053:-|nuORF ENST00000469518.1_1_7:72990936-72991053:-|nuORF ENST00000469518.1_1_7:72990936-72991053:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7879638671875 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 153.21 1 153.21 152.71 153.71 0 0 0 0 0.22588 1 30694 30694 11.64 3.047 1 49260 10181 32791 32812 48339 48339 0.01120554954900399 VGIGMINIV 9 Unmodified _VGIGMINIV_ 0 0 0 REV__nc|ENSG00000095319|Q5SRE5-2|NUP188 REV__nc|ENSG00000095319|Q5SRE5-2|NUP188 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2387390136719 2 458.270238 914.525924 NaN NaN NaN NaN NaN NaN NaN 98.127 1 94.029 93.529 94.529 -4.0978 0 0 0 0.23508 1 19267 19267 8.5933 0 1 + 49261 14606 32792 32813 48340 48340 0.06524203547803609 VGIGMINIV 9 Unmodified _VGIGMINIV_ 0 0 0 REV__nc|ENSG00000095319|Q5SRE5-2|NUP188 REV__nc|ENSG00000095319|Q5SRE5-2|NUP188 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2386474609375 2 458.270238 914.525924 NaN NaN NaN NaN NaN NaN NaN 153.2 1 147.98 147.48 148.48 -5.2209 0 0 0 0.23508 1 29693 29693 8.5933 0 1 + 49262 14606 32792 32813 48341 48341 0.06524203547803609 VGIGMKGP 8 Unmodified _VGIGMKGP_ 0 0 0 REV__tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 REV__tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21453857421875 2 379.715099 757.415645 -0.78561 -0.00029831 1.4885 0.00056522 0.70292 0.00026691 379.7153659805443 45.338 0.98266 42.471 42.048 43.031 -2.8665 91 27 5 0 0 0 8448 1 8210 8210 0.13829 0 1 15255000 + 49263 25441 32793 32814 48342 48342 0.027234032794467566 VGIGVLILLVR 11 Unmodified _VGIGVLILLVR_ 0 0 0 ENSG00000069206|ENST00000175238|ADAM7 ENSG00000069206|ENST00000175238|ADAM7 ENSG00000069206|ENST00000175238|ADAM7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3251342773438 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 149.18 1 149.18 148.68 149.68 0 0 0 0 0.22632 1 29866 29866 0.00056442 0 1 49264 1413 32794 32815 48343 48343 0.21080593638657774 VGIIDILI 8 Unmodified _VGIIDILI_ 0 0 0 REV__nc|ENSG00000154122|Q9HCJ1-2|ANKH REV__nc|ENSG00000154122|Q9HCJ1-2|ANKH MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 428.14190673828125 2 428.281129 854.547705 NaN NaN NaN NaN NaN NaN NaN 21.787 1 20.065 19.565 20.565 -1.7211 0 0 0 0.21486 1 3426 3426 0.79363 0 1 + 49265 17166 32795 32816 48344 48344 0.11461331568057176 VGIIGGGY 8 Unmodified _VGIIGGGY_ 0 0 0 REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1 REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 368.185546875 2 368.205421 734.39629 NaN NaN NaN NaN NaN NaN NaN 101.97 1 101.97 101.47 102.47 0 0 0 0 0.23711 1 20023 20023 0.12286 0 1 + 49266 25432 32796 32817 48345 48345 0.01846770260192443 VGIIGGGY 8 Unmodified _VGIIGGGY_ 0 0 0 REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1 REV__tr|U7T609|U7T609_FUSNUPeptidaseM23domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00048PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 368.4931335449219 2 368.205421 734.39629 NaN NaN NaN NaN NaN NaN NaN 118.05 1 118.05 117.55 118.55 0 0 0 0 0.23711 1 23254 23254 0.12286 0 1 + 49267 25432 32796 32817 48346 48346 0.01846770260192443 VGIIIAQPLQK 11 Unmodified _VGIIIAQPLQK_ 0 0 0 REV__ENSG00000125430|ENST00000360954|HS3ST3B1;REV__HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant REV__ENSG00000125430|ENST00000360954|HS3ST3B1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.274169921875 2 590.376623 1178.73869 NaN NaN NaN NaN NaN NaN NaN 170.24 1 165.37 164.87 165.87 -4.873 0 0 0 0.22683 1 33679 33679 10.8 0 1 + 49268 15814;17161 32797 32818 48347 48347 0.15647412879320655 VGIIKLKRQP 10 Unmodified _VGIIKLKRQP_ 0 0 0 REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3251342773438 2 576.384783 1150.75501 NaN NaN NaN NaN NaN NaN NaN 127.2 1 127.2 126.7 127.7 0 0 0 0 0.22588 1 25105 25105 0.45834 0 1 + 49269 25054 32798 32819 48348 48348 0.18566538836080326 VGIIKLKRQP 10 Unmodified _VGIIKLKRQP_ 0 0 0 REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3392333984375 2 576.384783 1150.75501 NaN NaN NaN NaN NaN NaN NaN 166.37 1 166.37 165.87 166.87 0 0 0 0 0.22588 1 33882 33882 3.9444 2.1002 1 + 49270 25054 32798 32819 48349 48349 0.18566538836080326 VGIIKLKRQP 10 Unmodified _VGIIKLKRQP_ 0 0 0 REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3261108398438 2 576.384783 1150.75501 NaN NaN NaN NaN NaN NaN NaN 138.4 1 133.48 132.98 133.98 -4.9216 0 0 0 2.8426 1 26613 26613 0 0 1 + 49271 25054 32798 32819 48350 48350 0.18566538836080326 VGIIKLKRQP 10 Unmodified _VGIIKLKRQP_ 0 0 0 REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3261108398438 2 576.384783 1150.75501 NaN NaN NaN NaN NaN NaN NaN 138.41 1 133.49 132.99 133.99 -4.9216 0 0 0 0.22588 1 26615 26615 1.6526 0.32309 1 + 49272 25054 32798 32819 48351 48351 0.18566538836080326 VGIIKLKRQP 10 Unmodified _VGIIKLKRQP_ 0 0 0 REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3319091796875 2 576.384783 1150.75501 NaN NaN NaN NaN NaN NaN NaN 138.45 1 133.51 133.01 134.01 -4.9335 0 0 0 2.8426 1 26622 26622 0 0 1 + 49273 25054 32798 32819 48352 48352 0.18566538836080326 VGIIKLKRQP 10 Unmodified _VGIIKLKRQP_ 0 0 0 REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 REV__tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3233642578125 2 576.384783 1150.75501 NaN NaN NaN NaN NaN NaN NaN 140.02 1 135.07 134.57 135.57 -4.952 0 0 0 2.8426 1 26944 26944 0 0 1 + 49274 25054 32798 32819 48353 48353 0.18566538836080326 VGIIKRLY 8 Unmodified _VGIIKRLY_ 0 0 0 REV__ABCB4|p.E470K|1|0.13|ENSG00000005471|chr7:87440351-87440351|C/T|missense_variant REV__ABCB4|p.E470K|1|0.13|ENSG00000005471|chr7:87440351-87440351|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7745361328125 2 481.313295 960.612037 NaN NaN NaN NaN NaN NaN NaN 44.089 1 44.089 43.589 44.589 0 0 0 0 0.23711 1 8265 8265 0.12286 0 1 + 49275 12896 32799 32820 48354 48354 0.1301553144483023 VGIILAQPLKK 11 Unmodified _VGIILAQPLKK_ 0 0 0 REV__ENSG00000182601|ENST00000331351|HS3ST4 REV__ENSG00000182601|ENST00000331351|HS3ST4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2482299804688 2 590.394816 1178.77508 NaN NaN NaN NaN NaN NaN NaN 124.4 1 119.8 119.3 120.3 -4.5926 0 0 0 0.23698 1 23934 23934 1.4819 0 1 + 49276 18790 32800 32821 48355 48355 0.19284289776010155 VGIKDSVK 8 Unmodified _VGIKDSVK_ 0 0 0 REV__tr|U7SUF4|U7SUF4_FUSNUPhosphoglyceratekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgkPE=3SV=1 REV__tr|U7SUF4|U7SUF4_FUSNUPhosphoglyceratekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgkPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 424.276611328125 2 423.258185 844.501818 -0.12989 -5.4977E-05 0.36858 0.00015601 0.23869 0.00010103 423.2582840877036 27.27 0.81098 25.348 25.122 25.933 -1.9222 58 22 3 0 0 0 0.83982 1 4511 4511 2.5775 0 1 15539000 + 49277 25164 32801 32822 48356 48356 0.07334686385809164 VGIKINVPKNI 11 Unmodified _VGIKINVPKNI_ 0 0 0 REV__tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1 REV__tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 398.92462158203125 3 398.923807 1193.74959 NaN NaN NaN NaN NaN NaN NaN 11.912 1 10.791 10.291 11.291 -1.1206 0 0 0 0.23698 1 1386 1386 0.50596 0.23694 1 + 49278 24906 32802 32823 48357 48357 0.16046815253594104 VGIKPTTKTT 10 Unmodified _VGIKPTTKTT_ 0 0 0 tr|U7T4U6|U7T4U6_FUSNUElongationfactorTuOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tufPE=3SV=1 tr|U7T4U6|U7T4U6_FUSNUElongationfactorTuOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tufPE=3SV=1 tr|U7T4U6|U7T4U6_FUSNUElongationfactorTuOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tufPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 349.2121887207031 3 349.213246 1044.61791 NaN NaN NaN NaN NaN NaN NaN 78.756 1 78.756 78.256 79.256 0 0 0 0 0.22588 1 15329 15329 1.5923 0 1 49279 26437 32803 32824 48358 48358 0.09738585165860059 VGILKVVKPL 10 Unmodified _VGILKVVKPL_ 0 0 0 ENSG00000134760|ENST00000257192|DSG1 ENSG00000134760|ENST00000257192|DSG1 ENSG00000134760|ENST00000257192|DSG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2737426757812 2 533.373352 1064.73215 NaN NaN NaN NaN NaN NaN NaN 148.02 1 142.87 142.37 143.37 -5.1557 0 0 0 2.8426 1 28648 28648 0 0 1 49280 3873 32804 32825 48359 48359 0.20237519718602925 VGILQKPCFF 10 Unmodified _VGILQKPCFF_ 0 0 0 FMO3|p.R504I|1|0.31|ENSG00000007933|chr1:171117354-171117354|G/T|missense_variant FMO3|p.R504I|1|0.31|ENSG00000007933|chr1:171117354-171117354|G/T|missense_variant FMO3|p.R504I|1|0.31|ENSG00000007933|chr1:171117354-171117354|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.326171875 2 576.31772 1150.62089 NaN NaN NaN NaN NaN NaN NaN 152.69 1 147.47 146.97 147.97 -5.2209 0 0 0 2.8426 1 29592 29592 0.043787 0 1 49281 11821 32805 32826 48360 48360 0.051601370189928275 VGILRRILR 9 Unmodified _VGILRRILR_ 0 0 0 ENSG00000156381|ENST00000286918|ANKRD9 ENSG00000156381|ENST00000286918|ANKRD9 ENSG00000156381|ENST00000286918|ANKRD9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.779296875 2 548.377292 1094.74003 0.33065 0.00018132 -2.2024 -0.0012077 -1.8717 -0.0010264 548.8788160593981 143.33 0.1738 143.33 143.24 143.41 0 6 4 2 0 0 0 0.65257 1 28599 28599 0 0 1 2209900 49282 5086 32806 32827 48361 48361 0.19645091758729905 VGILVRFY 8 Unmodified _VGILVRFY_ 0 0 0 ENST00000495425.6_1_17:19458825-19480863:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1 ENST00000495425.6_1_17:19458825-19480863:+|nuORF ENST00000495425.6_1_17:19458825-19480863:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 483.7852478027344 2 483.792195 965.569838 NaN NaN NaN NaN NaN NaN NaN 131.11 1 126.47 125.97 126.97 -4.6359 0 0 0 0.23711 1 25839 25839 0.12286 0 1 49283 4419 32807 32828 48362 48362 0.08567556036462065 VGINAETGL 9 Unmodified _VGINAETGL_ 0 0 0 REV__ENST00000454869.1_1_9:97101149-97121940:+|nuORF REV__ENST00000454869.1_1_9:97101149-97121940:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2287902832031 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 100.24 1 96.25 95.75 96.75 -3.9895 0 0 0 0.19691 1 19255 19255 2.6312 0 1 + 49284 21841 32808 32829 48363 48363 0.019015056264720442 VGINAETGL 9 Unmodified _VGINAETGL_ 0 0 0 REV__ENST00000454869.1_1_9:97101149-97121940:+|nuORF REV__ENST00000454869.1_1_9:97101149-97121940:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2273254394531 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 100.51 1 96.521 96.021 97.021 -3.9895 0 0 0 0.19691 1 19310 19310 0.40827 0 1 + 49285 21841 32808 32829 48364 48364 0.019015056264720442 VGIPEISLPY 10 Unmodified _VGIPEISLPY_ 0 0 0 REV__ENST00000489736.5_1_3:148904295-148925363:-|nuORF REV__ENST00000489736.5_1_3:148904295-148925363:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7953491210938 2 544.305332 1086.59611 0.21723 0.00011824 1.5937 0.00086748 1.811 0.00098572 544.8092365174097 134.68 0.10863 130.04 129.98 130.09 -4.6399 4 2 2 0 0 0 0.90091 1 26564 26564 6.2058 4.8763 1 1000200 + 49286 14064 32809 32830 48365 48365 0.056277804172850665 VGIPFGLLL 9 Unmodified _VGIPFGLLL_ 0 0 0 REV__tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1 REV__tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.169921875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 13.714 1 13.714 13.214 14.214 0 0 0 0 0.23508 1 1998 1998 0.26902 0 1 + 49287 25165 32810 32831 48366 48366 0.11265324322005199 VGIPFGLLL 9 Unmodified _VGIPFGLLL_ 0 0 0 REV__tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1 REV__tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1701354980469 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 14.731 1 14.731 14.231 15.231 0 0 0 0 0.23508 1 2212 2212 0.26902 0 1 + 49288 25165 32810 32831 48367 48367 0.11265324322005199 VGIPFGLLL 9 Unmodified _VGIPFGLLL_ 0 0 0 REV__tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1 REV__tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16973876953125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 14.943 1 14.943 14.443 15.443 0 0 0 0 0.23508 1 2253 2253 0.26902 0 1 + 49289 25165 32810 32831 48368 48368 0.11265324322005199 VGIPFGLLL 9 Unmodified _VGIPFGLLL_ 0 0 0 REV__tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1 REV__tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650390625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 62.72 1 62.72 62.22 63.22 0 0 0 0 0.23508 1 12047 12047 1.1933 0 1 + 49290 25165 32810 32831 48369 48369 0.11265324322005199 VGIPFGLLL 9 Unmodified _VGIPFGLLL_ 0 0 0 REV__tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1 REV__tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16461181640625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 15.597 1 14.375 13.875 14.875 -1.2219 0 0 0 0.23508 1 2195 2195 0.26902 0 1 + 49291 25165 32810 32831 48370 48370 0.11265324322005199 VGIPRQYYQH 10 Unmodified _VGIPRQYYQH_ 0 0 0 REV__ENSG00000140459|ENST00000268053|CYP11A1 REV__ENSG00000140459|ENST00000268053|CYP11A1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.32208251953125 3 420.887645 1259.64111 -0.489 -0.00020581 0.22016 9.2664E-05 -0.26883 -0.00011315 420.88774707597366 16.82 0.21018 15.604 15.495 15.705 -1.2159 11 5 3 0 0 0 0.91149 1 2646 2646 0.77653 0 1 304460 + 49292 16576 32811 32832 48371 48371 0.02167024003165352 VGIPRQYYQH 10 Unmodified _VGIPRQYYQH_ 0 0 0 REV__ENSG00000140459|ENST00000268053|CYP11A1 REV__ENSG00000140459|ENST00000268053|CYP11A1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 420.887645 1259.64111 -0.016465 -6.93E-06 -0.41508 -0.0001747 -0.43154 -0.00018163 420.8873577463364 15.674 0.13706 15.674 15.607 15.744 0 0.059223 -0.00074536 NaN 0.77653 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 418220 + 49293 16576 32811 32832 0.02167024003165352 VGIPRQYYQH 10 Unmodified _VGIPRQYYQH_ 0 0 0 REV__ENSG00000140459|ENST00000268053|CYP11A1 REV__ENSG00000140459|ENST00000268053|CYP11A1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 420.887645 1259.64111 -0.50961 -0.00021449 -0.088991 -3.7455E-05 -0.5986 -0.00025194 420.88770866734785 16.865 0.13773 15.593 15.487 15.625 -1.2722 -0.022474 -0.00033363 NaN 0.77653 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 363430 + 49294 16576 32811 32832 0.02167024003165352 VGIPRQYYQH 10 Unmodified _VGIPRQYYQH_ 0 0 0 REV__ENSG00000140459|ENST00000268053|CYP11A1 REV__ENSG00000140459|ENST00000268053|CYP11A1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 420.887645 1259.64111 -1.6992 -0.00071519 1.2681 0.00053372 -0.43117 -0.00018147 420.88822261739904 16.943 0.17486 15.59 15.507 15.682 -1.3534 -0.025493 0.0013799 NaN 0.77653 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 352170 + 49295 16576 32811 32832 0.02167024003165352 VGIPSMRF 8 Unmodified _VGIPSMRF_ 0 0 0 REV__ENST00000404816.6_1_2:33623649-33623826:+|nuORF REV__ENST00000404816.6_1_2:33623649-33623826:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7640686035156 2 453.746931 905.479308 NaN NaN NaN NaN NaN NaN NaN 63.387 1 59.972 59.472 60.472 -3.4158 0 0 0 0.21452 1 11840 11840 13.508 3.3245 1 + 49296 21379 32812 32833 48372 48372 0.022787637165492924 VGIPVVQIDGP 11 Unmodified _VGIPVVQIDGP_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.781005859375 2 547.316232 1092.61791 -0.04403 -2.4098E-05 -1.4832 -0.0008118 -1.5273 -0.00083589 547.3155909935289 111.75 0.56047 107.26 106.96 107.52 -4.4915 22 15 2 0 0 0 0.90723 1 21417 21417 7.609 0 1 1574800 + 49297 15218 32813 32834 48373 48373 0.0753058516584133 VGIRHRLR 8 Unmodified _VGIRHRLR_ 0 0 0 ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B ENST00000472645.1_1_X:48751014-48754386:-|nuORF ENST00000472645.1_1_X:48751014-48754386:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.22796630859375 3 336.217548 1005.63082 NaN NaN NaN NaN NaN NaN NaN 63.324 1 63.324 62.824 63.824 0 0 0 0 0.21486 1 12175 12175 0.45834 0 1 49298 3443 32814 32835 48374 48374 0.12822505859276134 VGIRKFKI 8 Unmodified _VGIRKFKI_ 0 0 0 REV__ENSG00000165732|ENST00000354185|DDX21 REV__ENSG00000165732|ENST00000354185|DDX21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2431640625 2 480.821287 959.628021 NaN NaN NaN NaN NaN NaN NaN 123.72 1 119.13 118.63 119.63 -4.5926 0 0 0 0.21486 1 23814 23814 2.8892 0 1 + 49299 17799 32815 32836 48375 48375 0.14659237681757986 VGIRLFFK 8 Unmodified _VGIRLFFK_ 0 0 0 REV__ENSG00000124198|ENST00000371917|ARFGEF2 REV__ENSG00000124198|ENST00000371917|ARFGEF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27215576171875 2 490.308013 978.601472 NaN NaN NaN NaN NaN NaN NaN 15.255 1 13.901 13.401 14.401 -1.3534 0 0 0 0.21486 1 2088 2088 0.79363 0 1 + 49300 15761 32816 32837 48376 48376 0.11131548790410761 VGISNLKHQR 10 Unmodified _VGISNLKHQR_ 0 0 0 CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-1|CSPP1 CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.333740234375 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 151.05 1 151.05 150.55 151.55 0 0 0 0 2.8426 1 30247 30247 0.0013812 0 1 49301 734 32817 32838 48377 48377 0.08778730240078403 VGISRIAKVK 10 Unmodified _VGISRIAKVK_ 0 0 0 ENSG00000164256|ENST00000296682|PRDM9;nc|ENSG00000126856|Q9NQW5-1|PRDM7 ENSG00000164256|ENST00000296682|PRDM9 ENSG00000164256|ENST00000296682|PRDM9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5546875 3 357.572998 1069.69716 NaN NaN NaN NaN NaN NaN NaN 105.88 1 101.61 101.11 102.11 -4.2638 0 0 0 2.8426 1 20841 20841 0.0013812 0 1 49302 5526 32818 32839 48378 48378 0.16510276910639732 VGISRIDI 8 Unmodified _VGISRIDI_ 0 0 0 REV__nc|ENSG00000151136|A6QL63-5|ABTB3 REV__nc|ENSG00000151136|A6QL63-5|ABTB3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21710205078125 2 436.763635 871.512717 0.15448 6.747E-05 0.64817 0.0002831 0.80264 0.00035057 436.76354103766045 119.25 0.37881 119.25 119 119.37 0 15 10 2 0 0 0 0.34864 1 23485 23485 57.471 6.6163 1 830180 + 49303 24097 32819 32840 48379 48379 0.071820887600893 VGISRPTSH 9 Unmodified _VGISRPTSH_ 0 0 0 nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0120544433594 3 318.510286 952.509028 -0.42591 -0.00013566 0.2943 9.3737E-05 -0.13161 -4.192E-05 318.5103487457786 27.342 0.41132 27.342 27.079 27.49 0 24 11 3 0 0 0 0.87918 1 4766 4766 5.2969 0 1 1030600 49304 5543 32820 32841 48380 48380 0.03087418986240209 VGISRPTSH 9 Unmodified _VGISRPTSH_ 0 0 0 nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 318.510286 952.509028 0.39378 0.00012542 -0.63214 -0.00020134 -0.23836 -7.5919E-05 318.51007281403 29.074 0.49496 27.118 26.946 27.441 -1.9561 -0.11076 -0.00040771 NaN 5.2969 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 891640 49305 5543 32820 32841 0.03087418986240209 VGISRPTSH 9 Unmodified _VGISRPTSH_ 0 0 0 nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 318.510286 952.509028 0.31561 0.00010052 -0.36928 -0.00011762 -0.053677 -1.7097E-05 318.51010369159167 29.024 0.41955 27.269 26.981 27.4 -1.7552 0.039694 -0.00015655 NaN 5.2969 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1178900 49306 5543 32820 32841 0.03087418986240209 VGISRPTSH 9 Unmodified _VGISRPTSH_ 0 0 0 nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 318.510286 952.509028 -0.25723 -8.193E-05 0.027514 8.7634E-06 -0.22972 -7.3167E-05 318.5102038225162 29.184 0.48719 27.188 26.9 27.387 -1.9962 -0.041474 0.0002226 NaN 5.2969 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 949660 49307 5543 32820 32841 0.03087418986240209 VGITDGLS 8 Unmodified _VGITDGLS_ 0 0 0 REV__HMGCLL1|p.K268Ifs*21|1|0.07|ENSG00000146151|chr6:55495501-55495502|-/TA|frameshift_variant REV__HMGCLL1|p.K268Ifs*21|1|0.07|ENSG00000146151|chr6:55495501-55495502|-/TA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2213439941406 2 381.205618 760.396684 NaN NaN NaN NaN NaN NaN NaN 28.513 1 28.513 28.013 29.013 0 0 0 0 0.21486 1 5065 5065 8.5933 0 1 + 49308 16872 32821 32842 48381 48381 0.006901451894009369 VGITGPSGEL 10 Unmodified _VGITGPSGEL_ 0 0 0 REV__ENST00000470041.5_1_1:206136994-206141493:+|nuORF REV__ENST00000470041.5_1_1:206136994-206141493:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2507629394531 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 72.832 1 69.205 68.705 69.705 -3.6275 0 0 0 0.22544 1 13759 13759 19.257 1.1106 1 + 49309 22025 32822 32843 48382 48382 0.01945774797957256 VGITKVVPILL 11 Unmodified _VGITKVVPILL_ 0 0 0 nc|ENSG00000185518|Q7L1I2-2|SV2B;ENSG00000185518|ENST00000394232|SV2B nc|ENSG00000185518|Q7L1I2-2|SV2B nc|ENSG00000185518|Q7L1I2-2|SV2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3265380859375 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 150.62 1 150.62 150.12 151.12 0 0 0 0 0.22632 1 30159 30159 0 0 1 49310 6997 32823 32844 48383 48383 0.19957771544500247 VGITKVVPILL 11 Unmodified _VGITKVVPILL_ 0 0 0 nc|ENSG00000185518|Q7L1I2-2|SV2B;ENSG00000185518|ENST00000394232|SV2B nc|ENSG00000185518|Q7L1I2-2|SV2B nc|ENSG00000185518|Q7L1I2-2|SV2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3255615234375 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 159.44 1 159.44 158.94 159.94 0 0 0 0 0.22632 1 32012 32012 0 0 1 49311 6997 32823 32844 48384 48384 0.19957771544500247 VGITKVVPILL 11 Unmodified _VGITKVVPILL_ 0 0 0 nc|ENSG00000185518|Q7L1I2-2|SV2B;ENSG00000185518|ENST00000394232|SV2B nc|ENSG00000185518|Q7L1I2-2|SV2B nc|ENSG00000185518|Q7L1I2-2|SV2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3216552734375 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 172.79 1 172.79 172.29 173.29 0 0 0 0 0.22632 1 35693 35693 0 0 1 49312 6997 32823 32844 48385 48385 0.19957771544500247 VGITKVVPILL 11 Unmodified _VGITKVVPILL_ 0 0 0 nc|ENSG00000185518|Q7L1I2-2|SV2B;ENSG00000185518|ENST00000394232|SV2B nc|ENSG00000185518|Q7L1I2-2|SV2B nc|ENSG00000185518|Q7L1I2-2|SV2B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3310546875 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 157.4 1 152.61 152.11 153.11 -4.7885 0 0 0 0.22632 1 31303 31303 0 0 1 49313 6997 32823 32844 48386 48386 0.19957771544500247 VGITMDVGGA 10 Unmodified _VGITMDVGGA_ 0 0 0 RFX2|p.S142Afs*72|1|0.42|ENSG00000087903|chr19:6040079-6040079|C/-|frameshift_variant RFX2|p.S142Afs*72|1|0.42|ENSG00000087903|chr19:6040079-6040079|C/-|frameshift_variant RFX2|p.S142Afs*72|1|0.42|ENSG00000087903|chr19:6040079-6040079|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2321472167969 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 129.56 1 124.82 124.32 125.32 -4.7408 0 0 0 0.22576 1 24932 24932 14.838 4.0143 1 49314 25606 32824 32845 48387 48387 -0.014418541082136471 VGIVGVGH 8 Unmodified _VGIVGVGH_ 0 0 0 tr|U7SRP5|U7SRP5_FUSNUL-lactatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ldhPE=3SV=1 tr|U7SRP5|U7SRP5_FUSNUL-lactatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ldhPE=3SV=1 tr|U7SRP5|U7SRP5_FUSNUL-lactatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ldhPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.1867370605469 2 369.218863 736.423173 NaN NaN NaN NaN NaN NaN NaN 27.882 1 27.882 27.382 28.382 0 0 0 0 0.23294 1 4934 4934 0.12286 0 1 49315 26084 32825 32846 48388 48388 0.04441878871375593 VGIVLILLVR 10 Unmodified _VGIVLILLVR_ 0 0 0 nc|ENSG00000163082|Q8IWX5-2|SGPP2;ENSG00000163082|ENST00000321276|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7737426757812 2 547.886627 1093.7587 NaN NaN NaN NaN NaN NaN NaN 166.85 1 162.06 161.56 162.56 -4.7898 0 0 0 2.8426 1 33568 33568 0.043787 0.042406 1 49316 5397 32826 32847 48389 48389 0.2155720860994279 VGIVLILLVR 10 Unmodified _VGIVLILLVR_ 0 0 0 nc|ENSG00000163082|Q8IWX5-2|SGPP2;ENSG00000163082|ENST00000321276|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7823486328125 2 547.886627 1093.7587 NaN NaN NaN NaN NaN NaN NaN 171.17 1 166.38 165.88 166.88 -4.7898 0 0 0 2.8426 1 34784 34784 0 0 1 49317 5397 32826 32847 48390 48390 0.2155720860994279 VGIVLILLVR 10 Unmodified _VGIVLILLVR_ 0 0 0 nc|ENSG00000163082|Q8IWX5-2|SGPP2;ENSG00000163082|ENST00000321276|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.771728515625 2 547.886627 1093.7587 NaN NaN NaN NaN NaN NaN NaN 132.8 1 128.01 127.51 128.51 -4.799 0 0 0 0.22588 1 25559 25559 0.45834 0 1 49318 5397 32826 32847 48391 48391 0.2155720860994279 VGIVWLTQY 9 Unmodified _VGIVWLTQY_ 0 0 0 ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201416015625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 81.687 1 81.687 81.187 82.187 0 0 0 0 0.23508 1 15912 15912 2.7352 0.64919 1 49319 3875 32827 32848 48392 48392 0.05019217482708882 VGIWIAFT 8 Unmodified _VGIWIAFT_ 0 0 0 nc|ENSG00000104728|O15013-7|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ENST00000523980.1_1_8:1891806-1893946:+|nuORF;nc|ENSG00000104728|O15013-4|ARHGEF10 nc|ENSG00000104728|O15013-7|ARHGEF10 nc|ENSG00000104728|O15013-7|ARHGEF10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.75799560546875 2 453.757821 905.501089 NaN NaN NaN NaN NaN NaN NaN 12.325 1 11.205 10.705 11.705 -1.1206 0 0 0 0.21486 1 1458 1458 2.8892 0.31174 1 49320 2249 32828 32849 48393 48393 0.04455891736745343 VGKAGVSP 8 Unmodified _VGKAGVSP_ 0 0 0 REV__ENST00000257552.6_1_12:120779899-120780196:-|nuORF REV__ENST00000257552.6_1_12:120779899-120780196:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5534973144531 2 357.710871 713.407189 NaN NaN NaN NaN NaN NaN NaN 59.497 1 56.273 55.773 56.773 -3.2237 0 0 0 0.23749 1 11114 11114 0.0082765 0 1 + 49321 20139 32829 32850 48394 48394 0.039021726344572016 VGKAIKFL 8 Unmodified _VGKAIKFL_ 0 0 0 REV__ENST00000431872.1_1_9:68357853-68358255:-|nuORF REV__ENST00000431872.1_1_9:68357853-68358255:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 438.87725830078125 2 438.289288 874.564024 0.92628 0.00040598 -0.51339 -0.00022501 0.41289 0.00018096 438.2889291203284 26.69 0.61372 24.908 24.483 25.096 -1.7821 35 17 3 0 0 0 0.88047 1 4695 4695 0.79363 0 1 1484900 + 49322 21626 32830 32851 48395 48395 0.12172457524775382 VGKAIKFL 8 Unmodified _VGKAIKFL_ 0 0 0 REV__ENST00000431872.1_1_9:68357853-68358255:-|nuORF REV__ENST00000431872.1_1_9:68357853-68358255:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.8831787109375 2 438.289288 874.564024 0.92628 0.00040598 -0.51339 -0.00022501 0.41289 0.00018096 438.2889291203284 26.69 0.61372 24.908 24.483 25.096 -1.7821 35 17 3 0 0 0 1.0271 1 4697 4697 2.5775 0 1 1484900 + 49323 21626 32830 32851 48396 48396 0.12172457524775382 VGKAIKFL 8 Unmodified _VGKAIKFL_ 0 0 0 REV__ENST00000431872.1_1_9:68357853-68358255:-|nuORF REV__ENST00000431872.1_1_9:68357853-68358255:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 438.289288 874.564024 0.21354 9.3593E-05 0.15636 6.8531E-05 0.3699 0.00016212 438.2892294697383 24.74 0.47341 24.74 24.44 24.913 0 -0.093561 7.4236E-05 NaN 2.5775 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1667300 + 49324 21626 32830 32851 0.12172457524775382 VGKAIKFL 8 Unmodified _VGKAIKFL_ 0 0 0 REV__ENST00000431872.1_1_9:68357853-68358255:-|nuORF REV__ENST00000431872.1_1_9:68357853-68358255:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 438.289288 874.564024 0.109 4.7775E-05 0.1295 5.6757E-05 0.2385 0.00010453 438.2892835598005 26.519 0.55918 24.885 24.513 25.072 -1.6347 0.051086 5.0687E-05 NaN 2.5775 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1414500 + 49325 21626 32830 32851 0.12172457524775382 VGKAIKFL 8 Unmodified _VGKAIKFL_ 0 0 0 REV__ENST00000431872.1_1_9:68357853-68358255:-|nuORF REV__ENST00000431872.1_1_9:68357853-68358255:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 438.289288 874.564024 -0.098199 -4.3039E-05 0.63316 0.00027751 0.53496 0.00023447 438.28940831592143 26.724 0.51502 24.802 24.469 24.984 -1.9222 -0.031845 0.00049219 NaN 2.5775 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1101200 + 49326 21626 32830 32851 0.12172457524775382 VGKAKLYA 8 Unmodified _VGKAKLYA_ 0 0 0 REV__nc|ENSG00000136925|Q5T7W7-2|TSTD2 REV__nc|ENSG00000136925|Q5T7W7-2|TSTD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2471008300781 2 425.263271 848.511988 NaN NaN NaN NaN NaN NaN NaN 49.348 1 46.467 45.967 46.967 -2.8811 0 0 0 0.2396 1 9348 9348 0 0 1 + 49327 16361 32831 32852 48397 48397 0.08167294111024148 VGKALLSNH 9 Unmodified _VGKALLSNH_ 0 0 0 REV__tr|U7SJE6|U7SJE6_FUSNUPhosphomethylpyrimidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiCPE=3SV=1 REV__tr|U7SJE6|U7SJE6_FUSNUPhosphomethylpyrimidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 469.7727966308594 2 469.774534 937.534515 NaN NaN NaN NaN NaN NaN NaN 131.23 1 131.23 130.73 131.73 0 0 0 0 0.19649 1 25945 25945 0.073264 0.071882 1 + 49328 24910 32832 32853 48398 48398 0.06324893508644891 VGKEETNLGEQ 11 Unmodified _VGKEETNLGEQ_ 0 0 0 ENST00000332687.10_1_X:73812773-73812809:-|nuORF ENST00000332687.10_1_X:73812773-73812809:-|nuORF ENST00000332687.10_1_X:73812773-73812809:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2799072265625 2 602.296224 1202.5779 NaN NaN NaN NaN NaN NaN NaN 107.25 1 102.84 102.34 103.34 -4.4121 0 0 0 0.22632 1 20575 20575 0.00056442 0 1 49329 8788 32833 32854 48399 48399 -0.015290062953681627 VGKEYYAA 8 Unmodified _VGKEYYAA_ 0 0 0 REV__ENSG00000132744|ENST00000255082|ACY3 REV__ENSG00000132744|ENST00000255082|ACY3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 451.2313537597656 2 450.726718 899.438883 0.29511 0.00013302 2.1106 0.00095129 2.4057 0.0010843 450.7268355410134 72.058 0.27829 68.519 68.398 68.676 -3.5385 11 7 2 0 0 0 8448 1 13672 13672 0.063987 0 1 542960 + 49330 16132 32834 32855 48400 48400 -0.014858794022529764 VGKFDPEQ 8 Unmodified _VGKFDPEQ_ 0 0 0 REV__nc|ENSG00000138079|Q07837-3|SLC3A1 REV__nc|ENSG00000138079|Q07837-3|SLC3A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23138427734375 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 84.962 1 81.053 80.553 81.553 -3.9093 0 0 0 0.21292 1 16152 16152 14.838 0 1 + 49331 16434 32835 32856 48401 48401 -0.017787808905723068 VGKFDPEQ 8 Unmodified _VGKFDPEQ_ 0 0 0 REV__nc|ENSG00000138079|Q07837-3|SLC3A1 REV__nc|ENSG00000138079|Q07837-3|SLC3A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2315368652344 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 84.736 1 81.024 80.524 81.524 -3.7117 0 0 0 0.21171 1 16184 16184 15.847 4.2069 1 + 49332 16434 32835 32856 48402 48402 -0.017787808905723068 VGKGGGKP 8 Unmodified _VGKGGGKP_ 0 0 0 REV__ENSG00000184867|ENST00000356824|ARMCX2 REV__ENSG00000184867|ENST00000356824|ARMCX2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 350.1941833496094 2 350.211038 698.407523 NaN NaN NaN NaN NaN NaN NaN 14.285 1 14.285 13.785 14.785 0 0 0 0 0.2396 1 2119 2119 0 0 1 + 49333 18919 32836 32857 48403 48403 0.04625592354318542 VGKGISTPD 9 Unmodified _VGKGISTPD_ 0 0 0 REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2279052734375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.406 1 63.406 62.906 63.906 0 0 0 0 0.19684 1 12191 12191 0.073264 0 1 + 49334 20690 32837 32858 48404 48404 0.019015056264720442 VGKGISTPD 9 Unmodified _VGKGISTPD_ 0 0 0 REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2359313964844 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 65.141 1 65.141 64.641 65.641 0 0 0 0 0.23508 1 12550 12550 12.532 3.9383 1 + 49335 20690 32837 32858 48405 48405 0.019015056264720442 VGKGISTPD 9 Unmodified _VGKGISTPD_ 0 0 0 REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2347717285156 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 65.381 1 65.381 64.881 65.881 0 0 0 0 0.23508 1 12605 12605 7.9102 0 1 + 49336 20690 32837 32858 48406 48406 0.019015056264720442 VGKGISTPD 9 Unmodified _VGKGISTPD_ 0 0 0 REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2356262207031 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 62.561 1 59.321 58.821 59.821 -3.2395 0 0 0 0.23508 1 11727 11727 10.824 1.4765 1 + 49337 20690 32837 32858 48407 48407 0.019015056264720442 VGKGISTPD 9 Unmodified _VGKGISTPD_ 0 0 0 REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2358093261719 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 67.715 1 64.388 63.888 64.888 -3.3268 0 0 0 0.23508 1 12772 12772 7.9102 2.1497 1 + 49338 20690 32837 32858 48408 48408 0.019015056264720442 VGKGISTPD 9 Unmodified _VGKGISTPD_ 0 0 0 REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22772216796875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 69.805 1 66.415 65.915 66.915 -3.3903 0 0 0 0.23508 1 13208 13208 7.9102 1.5561 1 + 49339 20690 32837 32858 48409 48409 0.019015056264720442 VGKGISTPD 9 Unmodified _VGKGISTPD_ 0 0 0 REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF REV__ENST00000339310.7_1_10:103343400-103347291:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23565673828125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 89.1 1 85.35 84.85 85.85 -3.7501 0 0 0 0.23508 1 17059 17059 12.532 0 1 + 49340 20690 32837 32858 48410 48410 0.019015056264720442 VGKGLYRG 8 Unmodified _VGKGLYRG_ 0 0 0 REV__ENST00000519834.5_1_17:4855124-4857242:+|nuORF REV__ENST00000519834.5_1_17:4855124-4857242:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2518005371094 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 173.26 1 173.26 172.76 173.76 0 0 0 0 0.23366 1 35817 35817 0.29564 0.16782 1 + 49341 13814 32838 32859 48411 48411 0.05653239308469438 VGKGRTGS 8 Unmodified _VGKGRTGS_ 0 0 0 ENST00000498406.1_1_22:21355751-21355970:-|nuORF ENST00000498406.1_1_22:21355751-21355970:-|nuORF ENST00000498406.1_1_22:21355751-21355970:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2168273925781 2 381.216852 760.419151 NaN NaN NaN NaN NaN NaN NaN 138.32 1 138.32 137.82 138.82 0 0 0 0 0.2396 1 27457 27457 0 0 1 49342 10602 32839 32860 48412 48412 0.02935789377659148 VGKGRTGS 8 Unmodified _VGKGRTGS_ 0 0 0 ENST00000498406.1_1_22:21355751-21355970:-|nuORF ENST00000498406.1_1_22:21355751-21355970:-|nuORF ENST00000498406.1_1_22:21355751-21355970:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21661376953125 2 381.216852 760.419151 NaN NaN NaN NaN NaN NaN NaN 47.819 1 44.95 44.45 45.45 -2.869 0 0 0 0.2396 1 9041 9041 0 0 1 49343 10602 32839 32860 48413 48413 0.02935789377659148 VGKGSDAK 8 Unmodified _VGKGSDAK_ 0 0 0 REV__ENST00000375514.9_1_2:162834256-162839752:+|nuORF REV__ENST00000375514.9_1_2:162834256-162839752:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21026611328125 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 24.941 1 24.941 24.441 25.441 0 0 0 0 0.23749 1 4309 4309 0.0082765 0 1 + 49344 21064 32840 32861 48414 48414 0.018129672835129895 VGKGSDAK 8 Unmodified _VGKGSDAK_ 0 0 0 REV__ENST00000375514.9_1_2:162834256-162839752:+|nuORF REV__ENST00000375514.9_1_2:162834256-162839752:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2109375 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 171.49 1 171.49 170.99 171.99 0 0 0 0 0.2396 1 35330 35330 0 0 1 + 49345 21064 32840 32861 48415 48415 0.018129672835129895 VGKGSDAK 8 Unmodified _VGKGSDAK_ 0 0 0 REV__ENST00000375514.9_1_2:162834256-162839752:+|nuORF REV__ENST00000375514.9_1_2:162834256-162839752:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2103271484375 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 26.401 1 24.619 24.119 25.119 -1.7821 0 0 0 0.2396 1 4658 4658 0 0 1 + 49346 21064 32840 32861 48416 48416 0.018129672835129895 VGKGSDAK 8 Unmodified _VGKGSDAK_ 0 0 0 REV__ENST00000375514.9_1_2:162834256-162839752:+|nuORF REV__ENST00000375514.9_1_2:162834256-162839752:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2106628417969 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 43.587 1 40.821 40.321 41.321 -2.7661 0 0 0 0.2396 1 7874 7874 0 0 1 + 49347 21064 32840 32861 48417 48417 0.018129672835129895 VGKGSDAK 8 Unmodified _VGKGSDAK_ 0 0 0 REV__ENST00000375514.9_1_2:162834256-162839752:+|nuORF REV__ENST00000375514.9_1_2:162834256-162839752:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2109069824219 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 110.21 1 106.03 105.53 106.53 -4.1826 0 0 0 0.2396 1 21209 21209 0 0 1 + 49348 21064 32840 32861 48418 48418 0.018129672835129895 VGKHNLWV 8 Unmodified _VGKHNLWV_ 0 0 0 REV__ENSG00000117461|ENST00000262741|PIK3R3 REV__ENSG00000117461|ENST00000262741|PIK3R3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.01141357421875 3 318.183622 951.529036 -0.47571 -0.00015136 0.44151 0.00014048 -0.034203 -1.0883E-05 318.18365285143335 22.205 0.48431 22.205 21.981 22.466 0 28 13 3 0 0 0 1.0276 1 3732 3732 1.8442 1.3859 1 1834900 + 49349 15521 32841 32862 48419 48419 0.05133214716840939 VGKHNLWV 8 Unmodified _VGKHNLWV_ 0 0 0 REV__ENSG00000117461|ENST00000262741|PIK3R3 REV__ENSG00000117461|ENST00000262741|PIK3R3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 318.183622 951.529036 -0.029866 -9.5028E-06 -0.021096 -6.7123E-06 -0.050961 -1.6215E-05 318.18351154741237 23.709 0.40762 22.256 22.035 22.443 -1.4535 0.02542 -0.00021732 NaN 1.8442 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1815200 + 49350 15521 32841 32862 0.05133214716840939 VGKILIFLT 9 Unmodified _VGKILIFLT_ 0 0 0 REV__ENST00000590602.5_1_17:76108973-76109180:-|nuORF REV__ENST00000590602.5_1_17:76108973-76109180:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 335.19183349609375 3 335.223194 1002.64775 NaN NaN NaN NaN NaN NaN NaN 25.739 1 23.886 23.386 24.386 -1.8534 0 0 0 0.23508 1 4242 4242 1.0715 0.10919 1 + 49351 23325 32842 32863 48420 48420 0.14653568901837843 VGKILTPILLL 11 Unmodified _VGKILTPILLL_ 0 0 0 tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1 tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1 tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2639770507812 2 590.407392 1178.80023 NaN NaN NaN NaN NaN NaN NaN 95.42 1 91.539 91.039 92.039 -3.881 0 0 0 0.22632 1 18308 18308 0 0 1 49352 26104 32843 32864 48421 48421 0.2179834457861034 VGKIRGKPLP 10 Unmodified _VGKIRGKPLP_ 0 0 0 ENSG00000162994|ENST00000401408|CLHC1;nc|ENSG00000162994|Q8NHS4-2|CLHC1 ENSG00000162994|ENST00000401408|CLHC1 ENSG00000162994|ENST00000401408|CLHC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2758178710938 2 532.850576 1063.6866 NaN NaN NaN NaN NaN NaN NaN 115.24 1 110.69 110.19 111.19 -4.555 0 0 0 2.8426 1 22125 22125 0 0 1 49353 5389 32844 32865 48422 48422 0.15730294256218258 VGKIVMTAAT 10 Unmodified _VGKIVMTAAT_ 0 0 0 ENST00000534425.5_1_11:67431830-67435009:-|nuORF;ENSG00000132746|ENST00000673966|ALDH3B2 ENST00000534425.5_1_11:67431830-67435009:-|nuORF ENST00000534425.5_1_11:67431830-67435009:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 495.7860107421875 2 495.786253 989.557952 NaN NaN NaN NaN NaN NaN NaN 6.9828 1 5.968 5.468 6.468 -1.0148 0 0 0 0.22588 1 520 520 0 0 1 49354 3759 32845 32866 48423 48423 0.06275571230946753 VGKKEGRLG 9 Unmodified _VGKKEGRLG_ 0 0 0 tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 472.42218017578125 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 12.209 1 11.08 10.58 11.58 -1.1293 0 0 0 0.1963 1 1482 1482 0.073264 0 1 49355 26272 32846 32867 48424 48424 0.0874858239999412 VGKKEVEH 8 Unmodified _VGKKEVEH_ 0 0 0 ENSG00000108592|ENST00000427159|FTSJ3 ENSG00000108592|ENST00000427159|FTSJ3 ENSG00000108592|ENST00000427159|FTSJ3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.9401550292969 3 309.174903 924.50288 -0.55942 -0.00017296 0.12312 3.8065E-05 -0.4363 -0.00013489 309.1749142234124 16.965 0.497 16.965 16.78 17.277 0 25 13 3 0 0 0 1.0281 1 2633 2633 0.45834 0 1 2302000 49356 2489 32847 32868 48425 48425 0.037609007547075635 VGKKEVEH 8 Unmodified _VGKKEVEH_ 0 0 0 ENSG00000108592|ENST00000427159|FTSJ3 ENSG00000108592|ENST00000427159|FTSJ3 ENSG00000108592|ENST00000427159|FTSJ3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 309.174903 924.50288 -0.37184 -0.00011497 0.11942 3.692E-05 -0.25243 -7.8045E-05 309.1748942506121 18.163 0.45555 16.852 16.686 17.142 -1.3109 -0.036008 -6.041E-05 NaN 0.45834 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2656200 49357 2489 32847 32868 0.037609007547075635 VGKKEVEH 8 Unmodified _VGKKEVEH_ 0 0 0 ENSG00000108592|ENST00000427159|FTSJ3 ENSG00000108592|ENST00000427159|FTSJ3 ENSG00000108592|ENST00000427159|FTSJ3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 309.174903 924.50288 -0.39451 -0.00012197 0.25307 7.8244E-05 -0.14144 -4.373E-05 309.174914396 18.119 0.36994 16.847 16.696 17.066 -1.2722 -0.041294 6.3562E-05 NaN 0.45834 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1799600 49358 2489 32847 32868 0.037609007547075635 VGKKHLKEKI 10 Unmodified _VGKKHLKEKI_ 0 0 0 MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2630615234375 2 590.38224 1178.74993 NaN NaN NaN NaN NaN NaN NaN 125.41 1 120.64 120.14 121.14 -4.7681 0 0 0 2.8426 1 24071 24071 0 0 1 49359 5772 32848 32869 48426 48426 0.16770234973455445 VGKKKKKK 8 Unmodified _VGKKKKKK_ 0 0 0 REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.2210388183594 3 315.230683 942.67022 NaN NaN NaN NaN NaN NaN NaN 21.276 1 21.276 20.776 21.776 0 0 0 0 0.21486 1 3553 3553 0.45834 0 1 + 49360 14893;21392 32849 32870 48427 48427 0.19659213090119465 VGKKKKKK 8 Unmodified _VGKKKKKK_ 0 0 0 REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1951599121094 3 315.230683 942.67022 NaN NaN NaN NaN NaN NaN NaN 21.748 1 20.274 19.774 20.774 -1.4742 0 0 0 0.21486 1 3691 3691 0.45834 0 1 + 49361 14893;21392 32849 32870 48428 48428 0.19659213090119465 VGKKKKKK 8 Unmodified _VGKKKKKK_ 0 0 0 REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.212890625 3 315.230683 942.67022 NaN NaN NaN NaN NaN NaN NaN 23.195 1 21.642 21.142 22.142 -1.5532 0 0 0 0.21486 1 3994 3994 0.45834 0 1 + 49362 14893;21392 32849 32870 48429 48429 0.19659213090119465 VGKKYLVL 8 Unmodified _VGKKYLVL_ 0 0 0 REV__nc|ENSG00000073737|Q9BPW9-4|DHRS9 REV__nc|ENSG00000073737|Q9BPW9-4|DHRS9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.20135498046875 3 307.204023 918.590239 NaN NaN NaN NaN NaN NaN NaN 113.07 1 108.62 108.12 109.12 -4.4539 0 0 0 0.21486 1 22279 22279 0.45834 0 1 + 49363 23949 32850 32871 48430 48430 0.12768726696253907 VGKLGLLQ 8 Unmodified _VGKLGLLQ_ 0 0 0 REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 414.2530212402344 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 27.497 1 25.742 25.242 26.242 -1.7552 0 0 0 0.21486 1 4606 4606 5.7604 0 1 + 49364 16613 32851 32872 48431 48431 0.10743580628081872 VGKLKGGDK 9 Unmodified _VGKLKGGDK_ 0 0 0 REV__tr|U7SGA9|U7SGA9_FUSNUPhosphoheptoseisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gmhAPE=3SV=1 REV__tr|U7SGA9|U7SGA9_FUSNUPhosphoheptoseisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gmhAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 451.27691650390625 2 451.276909 900.539266 NaN NaN NaN NaN NaN NaN NaN 169.23 1 164.35 163.85 164.85 -4.873 0 0 0 0.23508 1 33411 33411 1.8442 1.0506 1 + 49365 24871 32852 32873 48432 48432 0.08501777651417797 VGKLLLLPGR 10 Unmodified _VGKLLLLPGR_ 0 0 0 ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant;DCHS2|p.F225Lfs*14|1|0.4|ENSG00000197410|chr4:154366229-154366229|A/-|frameshift_variant;DCHS2|p.Q841Sfs*10|1|0.26|ENSG00000197410|chr4:154329555-154329555|G/-|frameshift_variant;DCHS2|p.Q841Pfs*31|1|0.28|ENSG00000197410|chr4:154329554-154329555|-/G|frameshift_variant;nc|ENSG00000197410|Q6V1P9-5|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2799682617188 2 533.360776 1064.707 NaN NaN NaN NaN NaN NaN NaN 139.33 1 139.33 138.83 139.83 0 0 0 0 2.8426 1 27688 27688 0 0 1 49366 7363 32853 32874 48433 48433 0.17723464916048215 VGKLRVFV 8 Unmodified _VGKLRVFV_ 0 0 0 ENSG00000198759|ENST00000361306|EGFL6;nc|ENSG00000198759|Q8IUX8-2|EGFL6 ENSG00000198759|ENST00000361306|EGFL6 ENSG00000198759|ENST00000361306|EGFL6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.2641906738281 3 306.535884 916.585822 NaN NaN NaN NaN NaN NaN NaN 26.327 1 24.405 23.905 24.905 -1.9222 0 0 0 0.21486 1 4357 4357 0.45834 0 1 49367 7488 32854 32875 48434 48434 0.12419262273363074 VGKLTLSSSA 10 Unmodified _VGKLTLSSSA_ 0 0 0 ENSG00000187492|ENST00000412678|CDHR4;nc|ENSG00000187492|A6H8M9-2|CDHR4 ENSG00000187492|ENST00000412678|CDHR4 ENSG00000187492|ENST00000412678|CDHR4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7810363769531 2 481.779482 961.544411 NaN NaN NaN NaN NaN NaN NaN 103.97 1 99.747 99.247 100.25 -4.2183 0 0 0 2.8426 1 20444 20444 0.44955 0 1 49368 7107 32855 32876 48435 48435 0.06210036723371104 VGKLYVKI 8 Unmodified _VGKLYVKI_ 0 0 0 REV__CYB5R1|p.K248Gfs*27|1|0.05|ENSG00000159348|chr1:202963069-202963070|-/GGGTTCC|frameshift_variant REV__CYB5R1|p.K248Gfs*27|1|0.05|ENSG00000159348|chr1:202963069-202963070|-/GGGTTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24017333984375 2 460.302396 918.590239 NaN NaN NaN NaN NaN NaN NaN 51.639 1 48.594 48.094 49.094 -3.0453 0 0 0 0.2396 1 9489 9489 0 0 1 + 49369 13623 32856 32877 48436 48436 0.12768726696276644 VGKNIFLMR 9 Unmodified _VGKNIFLMR_ 0 0 0 REV__ENST00000438413.5_1_1:155160311-155162038:-|nuORF REV__ENST00000438413.5_1_1:155160311-155162038:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2135009765625 3 359.879433 1076.61647 -2.2937 -0.00082545 1.4333 0.00051582 -0.86037 -0.00030963 359.88005598314567 14.708 0.20076 13.497 13.382 13.583 -1.2106 6 5 2 0 0 0 0.88466 1 1984 1984 0.26902 0 1 117770 + 49370 21683 32857 32878 48437 48437 0.08122672596095981 VGKNSLSG 8 Unmodified _VGKNSLSG_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21148681640625 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 97.477 1 93.558 93.058 94.058 -3.9194 0 0 0 0.23749 1 18706 18706 0.12286 0 1 49371 5137 32858 32879 48438 48438 0.01812967283535727 VGKNVSGT 8 Unmodified _VGKNVSGT_ 0 0 0 REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2106628417969 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 64.167 1 64.167 63.667 64.667 0 0 0 0 0.23749 1 12351 12351 0.12286 0 1 + 49372 23247 32859 32880 48439 48439 0.018129672835243582 VGKNVSGT 8 Unmodified _VGKNVSGT_ 0 0 0 REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21051025390625 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 88.428 1 88.428 87.928 88.928 0 0 0 0 0.23782 1 17261 17261 0.62683 0.50396 1 + 49373 23247 32859 32880 48440 48440 0.018129672835243582 VGKNVSGT 8 Unmodified _VGKNVSGT_ 0 0 0 REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2110900878906 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 60.291 1 56.978 56.478 57.478 -3.3139 0 0 0 0.23749 1 11226 11226 0.12286 0 1 + 49374 23247 32859 32880 48441 48441 0.018129672835243582 VGKPGFLY 8 Unmodified _VGKPGFLY_ 0 0 0 REV__ENSG00000146215|ENST00000372569|CRIP3 REV__ENSG00000146215|ENST00000372569|CRIP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 440.7506408691406 2 440.749996 879.485439 NaN NaN NaN NaN NaN NaN NaN 135.12 1 130.22 129.72 130.72 -4.8951 0 0 0 0.23711 1 25955 25955 0.12286 0 1 + 49375 16875 32860 32881 48442 48442 0.040876052196949786 VGKPILHR 8 Unmodified _VGKPILHR_ 0 0 0 REV__PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant REV__PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2425231933594 2 460.295436 918.57632 NaN NaN NaN NaN NaN NaN NaN 149.64 1 144.44 143.94 144.94 -5.1994 0 0 0 0.23749 1 28986 28986 0.12286 0.12286 1 + 49376 15495 32861 32882 48443 48443 0.11377493987833986 VGKPRHDR 8 Unmodified _VGKPRHDR_ 0 0 0 ENST00000374500.9_1_6:33385885-33386053:-|nuORF ENST00000374500.9_1_6:33385885-33386053:-|nuORF ENST00000374500.9_1_6:33385885-33386053:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.186279296875 3 322.186025 963.536246 NaN NaN NaN NaN NaN NaN NaN 16.682 1 15.466 14.966 15.966 -1.2159 0 0 0 0.21486 1 2637 2637 1.6526 0.58116 1 49377 9219 32862 32883 48444 48444 0.053019473172639664 VGKPRHDR 8 Unmodified _VGKPRHDR_ 0 0 0 ENST00000374500.9_1_6:33385885-33386053:-|nuORF ENST00000374500.9_1_6:33385885-33386053:-|nuORF ENST00000374500.9_1_6:33385885-33386053:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.1854553222656 3 322.186025 963.536246 NaN NaN NaN NaN NaN NaN NaN 16.723 1 15.451 14.951 15.951 -1.2722 0 0 0 0.21486 1 2421 2421 1.6526 0 1 49378 9219 32862 32883 48445 48445 0.053019473172639664 VGKPRSRY 8 Unmodified _VGKPRSRY_ 0 0 0 ENST00000468260.5_2_16:175002-188644:-|nuORF ENST00000468260.5_2_16:175002-188644:-|nuORF ENST00000468260.5_2_16:175002-188644:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7806091308594 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 157.94 1 152.66 152.16 153.16 -5.2748 0 0 0 0.21486 1 30654 30654 7.9102 2.6795 1 49379 10165 32863 32884 48446 48446 0.06343715602793054 VGKPSARAPP 10 Unmodified _VGKPSARAPP_ 0 0 0 ENST00000341976.4_2_22:24086192-24086420:-|nuORF ENST00000341976.4_2_22:24086192-24086420:-|nuORF ENST00000341976.4_2_22:24086192-24086420:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2757263183594 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 41.52 1 38.885 38.385 39.385 -2.6348 0 0 0 0.22588 1 7754 7754 9.3831 4.1525 1 49380 8860 32864 32885 48447 48447 0.07092582399980074 VGKPSARAPP 10 Unmodified _VGKPSARAPP_ 0 0 0 ENST00000341976.4_2_22:24086192-24086420:-|nuORF ENST00000341976.4_2_22:24086192-24086420:-|nuORF ENST00000341976.4_2_22:24086192-24086420:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2596435546875 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 41.62 1 38.985 38.485 39.485 -2.6348 0 0 0 0.22588 1 7775 7775 9.3831 0.78985 1 49381 8860 32864 32885 48448 48448 0.07092582399980074 VGKPSLSTKS 10 Unmodified _VGKPSLSTKS_ 0 0 0 REV__nc|ENSG00000079691|Q5VZK9-3|CARMIL1 REV__nc|ENSG00000079691|Q5VZK9-3|CARMIL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 335.2217712402344 3 335.197596 1002.57096 NaN NaN NaN NaN NaN NaN NaN 61.401 1 58.439 57.939 58.939 -2.9614 0 0 0 0.22588 1 11835 11835 1.7423 0.26037 1 + 49382 14401 32865 32886 48449 48449 0.06977725614706287 VGKPVVHPES 10 Unmodified _VGKPVVHPES_ 0 0 0 REV__TTN|p.A763G|1|0.06|ENSG00000155657|chr2:178785930-178785930|G/C|missense_variant REV__TTN|p.A763G|1|0.06|ENSG00000155657|chr2:178785930-178785930|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.2322998046875 3 350.197708 1047.57129 NaN NaN NaN NaN NaN NaN NaN 87.519 1 83.769 83.269 84.269 -3.7501 0 0 0 0.22588 1 16746 16746 1.9064 0.71303 1 + 49383 25499 32866 32887 48450 48450 0.049411453345555856 VGKQHLLAQ 9 Unmodified _VGKQHLLAQ_ 0 0 0 REV__nc|ENSG00000168334|Q702N8-3|XIRP1 REV__nc|ENSG00000168334|Q702N8-3|XIRP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.0054626464844 3 331.866181 992.576714 -0.32498 -0.00010785 0.1782 5.9139E-05 -0.14678 -4.8711E-05 331.86621265166286 72.095 1.3642 68.557 68.048 69.412 -3.5385 111 38 5 0 0 0 0.81221 1 13815 13815 1.1933 0 1 61317000 + 49384 18016 32867 32888 48451 48451 0.08012868917035121 VGKQHLLAQ 9 Unmodified _VGKQHLLAQ_ 0 0 0 REV__nc|ENSG00000168334|Q702N8-3|XIRP1 REV__nc|ENSG00000168334|Q702N8-3|XIRP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 331.866181 992.576714 0.29443 9.771E-05 -0.55463 -0.00018406 -0.2602 -8.6352E-05 331.8659816960482 72.168 0.99879 68.54 68.059 69.057 -3.6275 0.011266 -0.00052352 NaN 1.1933 90 27 5 NaN NaN NaN NaN 0 NaN NaN 0 49387000 + 49385 18016 32867 32888 0.08012868917035121 VGKRAFITPY 10 Unmodified _VGKRAFITPY_ 0 0 0 REV__ENSG00000163576|ENST00000295824|EFHB REV__ENSG00000163576|ENST00000295824|EFHB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3211669921875 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 128.34 1 123.71 123.21 124.21 -4.6292 0 0 0 2.8426 1 25305 25305 0.043787 0 1 + 49386 17586 32868 32889 48452 48452 0.08057997639662062 VGKRAFITPY 10 Unmodified _VGKRAFITPY_ 0 0 0 REV__ENSG00000163576|ENST00000295824|EFHB REV__ENSG00000163576|ENST00000295824|EFHB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3308715820312 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 93.574 1 89.43 88.93 89.93 -4.1435 0 0 0 2.8426 1 17839 17839 0.043787 0 1 + 49387 17586 32868 32889 48453 48453 0.08057997639662062 VGKRCCLW 8 Unmodified _VGKRCCLW_ 0 0 0 ENSG00000239900|ENST00000623063|ADSL;nc|ENSG00000239900|P30566-2|ADSL;ENST00000477111.2_1_22:40745965-40755045:+|nuORF ENSG00000239900|ENST00000623063|ADSL ENSG00000239900|ENST00000623063|ADSL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.86798095703125 3 322.166697 963.478262 -0.57097 -0.00018395 -0.28622 -9.2212E-05 -0.85719 -0.00027616 322.16647239319303 15.349 0.21025 15.349 15.227 15.438 0 8 5 2 0 0 0 1.0281 1 2326 2326 0.45834 0 1 722670 49388 7841 32869 32890 48454 48454 -0.004937739240176597 VGKRCCLW 8 Unmodified _VGKRCCLW_ 0 0 0 ENSG00000239900|ENST00000623063|ADSL;nc|ENSG00000239900|P30566-2|ADSL;ENST00000477111.2_1_22:40745965-40755045:+|nuORF ENSG00000239900|ENST00000623063|ADSL ENSG00000239900|ENST00000623063|ADSL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 322.166697 963.478262 -0.6915 -0.00022278 -0.25449 -8.1988E-05 -0.94599 -0.00030477 322.1665052299753 16.327 0.17243 15.111 15.01 15.182 -1.2159 -0.095275 8.704E-05 NaN 0.45834 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 479280 49389 7841 32869 32890 -0.004937739240176597 VGKRCCLW 8 Unmodified _VGKRCCLW_ 0 0 0 ENSG00000239900|ENST00000623063|ADSL;nc|ENSG00000239900|P30566-2|ADSL;ENST00000477111.2_1_22:40745965-40755045:+|nuORF ENSG00000239900|ENST00000623063|ADSL ENSG00000239900|ENST00000623063|ADSL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 322.166697 963.478262 -0.5094 -0.00016411 -0.60326 -0.00019435 -1.1127 -0.00035846 322.1664141816077 16.381 0.13754 15.159 15.058 15.196 -1.2219 -0.047238 -0.00025005 NaN 0.45834 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 298110 49390 7841 32869 32890 -0.004937739240176597 VGKRGRPF 8 Unmodified _VGKRGRPF_ 0 0 0 REV__ENST00000233809.8_2_2:217528903-217529134:+|nuORF REV__ENST00000233809.8_2_2:217528903-217529134:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.2509765625 3 306.187366 915.540269 NaN NaN NaN NaN NaN NaN NaN 31.946 1 29.798 29.298 30.298 -2.1483 0 0 0 0.21486 1 5520 5520 0.45834 0 1 + 49391 20073 32870 32891 48455 48455 0.07912036810989775 VGKRLLMG 8 Unmodified _VGKRLLMG_ 0 0 0 ENST00000433715.5_1_7:44161644-44163931:-|nuORF ENST00000433715.5_1_7:44161644-44163931:-|nuORF ENST00000433715.5_1_7:44161644-44163931:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2353210449219 2 437.270573 872.526593 NaN NaN NaN NaN NaN NaN NaN 16.763 1 15.491 14.991 15.991 -1.2722 0 0 0 0.21486 1 2429 2429 0.79363 0 1 49392 9814 32871 32892 48456 48456 0.0852304298754234 VGKRRAAG 8 Unmodified _VGKRRAAG_ 0 0 0 REV__ENST00000287652.8_1_3:10290629-10291047:+|nuORF REV__ENST00000287652.8_1_3:10290629-10291047:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 407.75238037109375 2 407.753936 813.493319 NaN NaN NaN NaN NaN NaN NaN 137.33 1 137.33 136.83 137.83 0 0 0 0 0.23749 1 27235 27235 0.12286 0 1 + 49393 20341 32872 32893 48457 48457 0.07911177259836677 VGKRRKTNK 9 Unmodified _VGKRRKTNK_ 0 0 0 ENST00000454631.1_1_1:231660190-231664218:-|nuORF;ENST00000425412.1_1_1:231663082-231664218:-|nuORF;ENST00000416221.5_1_1:231658373-231664296:-|nuORF ENST00000454631.1_1_1:231660190-231664218:-|nuORF ENST00000454631.1_1_1:231660190-231664218:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7774658203125 2 543.846356 1085.67816 0.39305 0.00021376 -1.5107 -0.0008216 -1.1177 -0.00060784 543.8455555142858 145.22 0.14015 140.28 140.17 140.31 -4.9445 5 3 2 0 0 0 0.6171 1 28054 28054 0.073264 0 1 2357500 49394 10015 32873 32894 48458 48458 0.13874740339588243 VGKRTACF 8 Unmodified _VGKRTACF_ 0 0 0 REV__HFM1|p.K1137Hfs*4|1|0.1|ENSG00000162669|chr1:91277045-91277046|-/ATTTAAAGTG|frameshift_variant REV__HFM1|p.K1137Hfs*4|1|0.1|ENSG00000162669|chr1:91277045-91277046|-/ATTTAAAGTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 441.2366943359375 2 441.23673 880.458907 NaN NaN NaN NaN NaN NaN NaN 68.865 1 65.328 64.828 65.828 -3.5362 0 0 0 0.21486 1 12954 12954 2.5775 0 1 + 49395 17518 32874 32895 48459 48459 0.013895930567173309 VGKRVQHRT 9 Unmodified _VGKRVQHRT_ 0 0 0 REV__ENSG00000177108|ENST00000319374|ZDHHC22 REV__ENSG00000177108|ENST00000319374|ZDHHC22 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2784423828125 2 540.822881 1079.63121 0.29192 0.00015788 -3.8363 -0.0020748 -3.5444 -0.0019169 540.8221450714932 135.88 0.24004 135.88 135.78 136.02 0 5 3 2 0 0 0 0.6231 1 26925 26925 0.073264 0 1 2647600 + 49396 18541 32875 32896 48460 48460 0.09457880788454531 VGKRYIVKKI 10 Unmodified _VGKRYIVKKI_ 0 0 0 tr|U7SJM2|U7SJM2_FUSNUFerrousirontransporterAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02107PE=4SV=1 tr|U7SJM2|U7SJM2_FUSNUFerrousirontransporterAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02107PE=4SV=1 tr|U7SJM2|U7SJM2_FUSNUFerrousirontransporterAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02107PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2913208007812 2 602.400433 1202.78631 NaN NaN NaN NaN NaN NaN NaN 133.16 1 128.3 127.8 128.8 -4.8578 0 0 0 2.8426 1 25580 25580 0 0 1 49397 25948 32876 32897 48461 48461 0.19303111870158318 VGKRYIVKKI 10 Unmodified _VGKRYIVKKI_ 0 0 0 tr|U7SJM2|U7SJM2_FUSNUFerrousirontransporterAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02107PE=4SV=1 tr|U7SJM2|U7SJM2_FUSNUFerrousirontransporterAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02107PE=4SV=1 tr|U7SJM2|U7SJM2_FUSNUFerrousirontransporterAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02107PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2937622070312 2 602.400433 1202.78631 NaN NaN NaN NaN NaN NaN NaN 166.48 1 161.53 161.03 162.03 -4.9484 0 0 0 2.8426 1 32631 32631 0 0 1 49398 25948 32876 32897 48462 48462 0.19303111870158318 VGKSKYLLL 9 Unmodified _VGKSKYLLL_ 0 0 0 ENST00000244040.3_1_20:56935598-56935670:+|nuORF ENST00000244040.3_1_20:56935598-56935670:+|nuORF ENST00000244040.3_1_20:56935598-56935670:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.1955261230469 3 340.886582 1019.63792 -0.24551 -8.3691E-05 0.30264 0.00010316 0.057126 1.9473E-05 340.886571212903 98.999 0.51807 94.867 94.61 95.128 -4.1326 28 14 3 0 0 0 0.81221 1 19419 19419 1.1933 0 1 1792700 49399 8197 32877 32898 48463 48463 0.12888380896470153 VGKSSATN 8 Unmodified _VGKSSATN_ 0 0 0 ENSG00000137727|ENST00000683387|ARHGAP20;nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20 ENSG00000137727|ENST00000683387|ARHGAP20 ENSG00000137727|ENST00000683387|ARHGAP20 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 382.19775390625 2 382.200867 762.387182 NaN NaN NaN NaN NaN NaN NaN 20.282 1 18.647 18.147 19.147 -1.6351 0 0 0 0.2396 1 3114 3114 0 0 1 49400 4101 32878 32899 48464 48464 -0.0035162309615088816 VGKSSFINKV 10 Unmodified _VGKSSFINKV_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;tr|U7SL66|U7SL66_FUSNUGTPaseObgOS=FusobacteriumnucleatumCTI-5OX=1316586GN=obgPE=3SV=1 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2130126953125 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 18.185 1 16.67 16.17 17.17 -1.5148 0 0 0 0.22588 1 2681 2681 2.086 0.89267 1 49401 2449 32879 32900 48465 48465 0.0825400488570267 VGKSSSGR 8 Unmodified _VGKSSSGR_ 0 0 0 REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|267|2|anti-sense REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|267|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 389.206787109375 2 389.214309 776.414065 NaN NaN NaN NaN NaN NaN NaN 49.082 1 46.201 45.701 46.701 -2.8811 0 0 0 0.23538 1 9295 9295 0.30703 0.055553 1 + 49402 23615 32880 32901 48466 48466 0.016914855150503172 VGKTGCGK 8 Unmodified _VGKTGCGK_ 0 0 0 ENSG00000196329|ENST00000358647|GIMAP5;nc|ENSG00000196329|Q96F15-2|GIMAP5 ENSG00000196329|ENST00000358647|GIMAP5 ENSG00000196329|ENST00000358647|GIMAP5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2174987792969 2 375.202356 748.390159 NaN NaN NaN NaN NaN NaN NaN 37.317 1 34.98 34.48 35.48 -2.3375 0 0 0 0.2396 1 6602 6602 0.30703 0.30703 1 49403 7255 32881 32902 48467 48467 0.005899287570173328 VGKTKKRTKT 10 Unmodified _VGKTKKRTKT_ 0 0 0 ENSG00000130477|ENST00000519716|UNC13A ENSG00000130477|ENST00000519716|UNC13A ENSG00000130477|ENST00000519716|UNC13A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 573.8688354492188 2 573.869497 1145.72444 NaN NaN NaN NaN NaN NaN NaN 10.837 1 10.837 10.337 11.337 0 0 0 0 0.22588 1 1385 1385 0 0 1 49404 3610 32882 32903 48468 48468 0.15740760451012648 VGKTSLVERY 10 Unmodified _VGKTSLVERY_ 0 0 0 ENST00000393610.3_1_5:176729603-176730289:-|nuORF;ENST00000495458.5_1_5:176729817-176730289:-|nuORF;ENST00000478234.5_1_5:176729278-176730289:-|nuORF;ENST00000471466.5_1_5:176729278-176730289:-|nuORF;ENSG00000169228|ENST00000303251|RAB24 ENST00000393610.3_1_5:176729603-176730289:-|nuORF ENST00000393610.3_1_5:176729603-176730289:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3213500976562 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 72.904 1 69.365 68.865 69.865 -3.5385 0 0 0 2.8426 1 13827 13827 0.043787 0 1 49405 5971 32883 32904 48469 48469 0.06533086051786086 VGKTSLVERY 10 Unmodified _VGKTSLVERY_ 0 0 0 ENST00000393610.3_1_5:176729603-176730289:-|nuORF;ENST00000495458.5_1_5:176729817-176730289:-|nuORF;ENST00000478234.5_1_5:176729278-176730289:-|nuORF;ENST00000471466.5_1_5:176729278-176730289:-|nuORF;ENSG00000169228|ENST00000303251|RAB24 ENST00000393610.3_1_5:176729603-176730289:-|nuORF ENST00000393610.3_1_5:176729603-176730289:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3223876953125 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 122.79 1 118.2 117.7 118.7 -4.5926 0 0 0 0.22588 1 23637 23637 9.3831 0 1 49406 5971 32883 32904 48470 48470 0.06533086051786086 VGKTTLAKK 9 Unmodified _VGKTTLAKK_ 0 0 0 NLRP7|p.E381Rfs*35|1|0.34|ENSG00000167634|chr19:54939678-54939678|C/-|frameshift_variant;NLRP7|p.I594Ffs*5|1|0.26|ENSG00000167634|chr19:54939039-54939039|T/-|frameshift_variant;nc|ENSG00000167634|Q8WX94|NLRP7;nc|ENSG00000167634|Q8WX94-2|NLRP7;ENSG00000167634|ENST00000588756|NLRP7 NLRP7|p.E381Rfs*35|1|0.34|ENSG00000167634|chr19:54939678-54939678|C/-|frameshift_variant NLRP7|p.E381Rfs*35|1|0.34|ENSG00000167634|chr19:54939678-54939678|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.8800354003906 3 315.874565 944.601866 NaN NaN NaN NaN NaN NaN NaN 13.56 1 13.56 13.06 14.06 0 0 0 0 0.23508 1 1965 1965 0.26902 0.26902 1 49407 5826 32884 32905 48471 48471 0.1273492371960856 VGKVPIPLC 9 Unmodified _VGKVPIPLC_ 0 0 0 ENST00000260356.5_1_15:39887667-39888120:+|nuORF ENST00000260356.5_1_15:39887667-39888120:+|nuORF ENST00000260356.5_1_15:39887667-39888120:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 309.1905517578125 3 309.189496 924.546659 NaN NaN NaN NaN NaN NaN NaN 95.844 1 91.963 91.463 92.463 -3.881 0 0 0 0.23508 1 18393 18393 0.26902 0 1 49408 8279 32885 32906 48472 48472 0.08136793927485542 VGKVPLKRL 9 Unmodified _VGKVPLKRL_ 0 0 0 REV__PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant REV__PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.2337951660156 3 337.234205 1008.68079 NaN NaN NaN NaN NaN NaN NaN 13.96 1 12.846 12.346 13.346 -1.1142 0 0 0 0.1963 1 2060 2060 0 0 1 + 49409 24534 32886 32907 48473 48473 0.17679195744563003 VGKVPLKRL 9 Unmodified _VGKVPLKRL_ 0 0 0 REV__PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant REV__PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.52557373046875 3 337.234205 1008.68079 NaN NaN NaN NaN NaN NaN NaN 19.252 1 17.855 17.355 18.355 -1.3966 0 0 0 0.1963 1 3166 3166 0 0 1 + 49410 24534 32886 32907 48474 48474 0.17679195744563003 VGKVPLKRL 9 Unmodified _VGKVPLKRL_ 0 0 0 REV__PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant REV__PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.49114990234375 3 337.234205 1008.68079 NaN NaN NaN NaN NaN NaN NaN 50.606 1 47.725 47.225 48.225 -2.8811 0 0 0 0.1963 1 9603 9603 0 0 1 + 49411 24534 32886 32907 48475 48475 0.17679195744563003 VGKVPLKRL 9 Unmodified _VGKVPLKRL_ 0 0 0 REV__PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant REV__PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.1896667480469 3 337.234205 1008.68079 NaN NaN NaN NaN NaN NaN NaN 28.08 1 26.324 25.824 26.824 -1.7552 0 0 0 0.23508 1 4727 4727 0.26902 0 1 + 49412 24534 32886 32907 48476 48476 0.17679195744563003 VGKVPLKRL 9 Unmodified _VGKVPLKRL_ 0 0 0 REV__PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant REV__PUS7|p.R442Gfs*16|1|0.53|ENSG00000091127|chr7:105470762-105470762|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.1796875 3 337.234205 1008.68079 NaN NaN NaN NaN NaN NaN NaN 33.235 1 31.088 30.588 31.588 -2.1468 0 0 0 0.1963 1 5793 5793 0 0 1 + 49413 24534 32886 32907 48477 48477 0.17679195744563003 VGKWKEVK 8 Unmodified _VGKWKEVK_ 0 0 0 ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;DDX24|p.A177Rfs*34|1|0.2|ENSG00000089737|chr14:94079221-94079221|G/-|frameshift_variant;ENST00000555324.1_1_14:94545323-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant ENST00000555762.1_1_14:94524146-94547480:-|nuORF ENST00000555762.1_1_14:94524146-94547480:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.19854736328125 3 325.19916 972.575651 NaN NaN NaN NaN NaN NaN NaN 90.23 1 86.371 85.871 86.871 -3.8595 0 0 0 0.21486 1 17654 17654 0.45834 0 1 49414 1769 32887 32908 48478 48478 0.0882665454812468 VGKYKMFG 8 Unmodified _VGKYKMFG_ 0 0 0 REV__ENST00000519948.3_1_12:74933526-74933616:+|nuORF REV__ENST00000519948.3_1_12:74933526-74933616:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2511291503906 2 465.249306 928.484059 NaN NaN NaN NaN NaN NaN NaN 171.39 1 166.6 166.1 167.1 -4.7898 0 0 0 0.21486 1 34845 34845 5.7604 0.52976 1 + 49415 22629 32888 32909 48479 48479 0.016956478592987878 VGKYLRQKRI 10 Unmodified _VGKYLRQKRI_ 0 0 0 ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7625122070312 2 630.898589 1259.78262 0.4008 0.00025287 -3.0877 -0.001948 -2.6869 -0.0016952 631.3992228188318 128.6 0.17215 128.6 128.53 128.7 0 5 4 2 0 0 0 1.1344 1 25417 25417 0 0 1 1028600 49416 232 32889 32910 48480 48480 0.1631244209631859 VGKYLRQKRI 10 Unmodified _VGKYLRQKRI_ 0 0 0 ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7615966796875 2 630.898589 1259.78262 NaN NaN NaN NaN NaN NaN NaN 89.095 1 85.302 84.802 85.802 -3.7926 0 0 0 2.8426 1 17431 17431 0 0 1 49417 232 32889 32910 48481 48481 0.1631244209631859 VGKYLRQKRI 10 Unmodified _VGKYLRQKRI_ 0 0 0 ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ENSG00000116539|ENST00000392403|ASH1L ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7559814453125 2 630.898589 1259.78262 NaN NaN NaN NaN NaN NaN NaN 116.98 1 112.39 111.89 112.89 -4.5815 0 0 0 2.8426 1 22445 22445 0 0 1 49418 232 32889 32910 48482 48482 0.1631244209631859 VGKYYSYYCD 10 Unmodified _VGKYYSYYCD_ 0 0 0 CFH|p.T645Nfs*9|1|0.26|ENSG00000000971|chr1:196726523-196726524|-/A|frameshift_variant;ENST00000466229.5_1_1:196648727-196709933:+|nuORF;CFH|p.Q859Hfs*22|1|0.05|ENSG00000000971|chr1:196736986-196736987|-/TAATTGTATTT|frameshift_variant;nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000116785|Q02985-2|CFHR3;ENSG00000116785|ENST00000367425|CFHR3;nc|ENSG00000000971|P08603-2|CFH CFH|p.T645Nfs*9|1|0.26|ENSG00000000971|chr1:196726523-196726524|-/A|frameshift_variant CFH|p.T645Nfs*9|1|0.26|ENSG00000000971|chr1:196726523-196726524|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7657470703125 2 630.765714 1259.51688 NaN NaN NaN NaN NaN NaN NaN 174.11 1 169.22 168.72 169.72 -4.8845 0 0 0 2.8426 1 34585 34585 0.043787 0.017581 1 49419 505 32890 32911 48483 48483 -0.10250234599152463 VGLALLVRKL 10 Unmodified _VGLALLVRKL_ 0 0 0 ENSG00000130545|ENST00000600229|CRB3;nc|ENSG00000130545|Q9BUF7-2|CRB3 ENSG00000130545|ENST00000600229|CRB3 ENSG00000130545|ENST00000600229|CRB3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2720336914062 2 541.376426 1080.7383 NaN NaN NaN NaN NaN NaN NaN 43.982 1 41.192 40.692 41.692 -2.79 0 0 0 0.22588 1 8253 8253 4.3292 2.485 1 49420 3616 32891 32912 48484 48484 0.20116037950128884 VGLASSQLCYY 11 Unmodified _VGLASSQLCYY_ 0 0 0 nc|ENSG00000156194|O14830-2|PPEF2 nc|ENSG00000156194|O14830-2|PPEF2 nc|ENSG00000156194|O14830-2|PPEF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2901611328125 2 602.289356 1202.56416 NaN NaN NaN NaN NaN NaN NaN 65.272 1 65.272 64.772 65.772 0 0 0 0 0.22862 1 12580 12580 9.3831 2.0939 1 49421 12391 32892 32913 48485 48485 -0.029019553281614208 VGLAVGPFVY 10 Unmodified _VGLAVGPFVY_ 0 0 0 REV__nc|ENSG00000065833|P48163-2|ME1 REV__nc|ENSG00000065833|P48163-2|ME1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.2070617675781 3 341.195416 1020.56442 NaN NaN NaN NaN NaN NaN NaN 77.245 1 73.586 73.086 74.086 -3.6588 0 0 0 0.22588 1 14704 14704 0.77653 0 1 + 49422 14193 32893 32914 48486 48486 0.054958324539938985 VGLAVTFAIM 10 Unmodified _VGLAVTFAIM_ 0 0 0 REV__tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1 REV__tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.1600036621094 3 341.196539 1020.56779 NaN NaN NaN NaN NaN NaN NaN 124.37 1 119.79 119.29 120.29 -4.5757 0 0 0 0.22588 1 24524 24524 0.77653 0 1 + 49423 24940 32894 32915 48487 48487 0.058327592363411895 VGLCGQSAFQ 10 Unmodified _VGLCGQSAFQ_ 0 0 0 REV__SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant REV__SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.1553649902344 3 337.163898 1008.46987 NaN NaN NaN NaN NaN NaN NaN 74.474 1 74.474 73.974 74.974 0 0 0 0 0.22588 1 14459 14459 0.77653 0.078866 1 + 49424 19254 32895 32916 48488 48488 -0.03403049359656052 VGLCGQSAFQ 10 Unmodified _VGLCGQSAFQ_ 0 0 0 REV__SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant REV__SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.16302490234375 3 337.163898 1008.46987 NaN NaN NaN NaN NaN NaN NaN 143.88 1 138.94 138.44 139.44 -4.9382 0 0 0 0.22588 1 27772 27772 0.77653 0.31819 1 + 49425 19254 32895 32916 48489 48489 -0.03403049359656052 VGLCLSLG 8 Unmodified _VGLCLSLG_ 0 0 0 REV__ENST00000565743.1_1_16:84682580-84682835:+|nuORF REV__ENST00000565743.1_1_16:84682580-84682835:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21673583984375 2 381.214932 760.415311 NaN NaN NaN NaN NaN NaN NaN 47.276 1 44.333 43.833 44.833 -2.9421 0 0 0 0.23294 1 8615 8615 0.063987 0 1 + 49426 23114 32896 32917 48490 48490 0.025519835595900986 VGLCSRHELD 10 Unmodified _VGLCSRHELD_ 0 0 0 REV__ENST00000568710.1_1_16:84882-84945:-|nuORF REV__ENST00000568710.1_1_16:84882-84945:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 376.85711669921875 3 376.853724 1127.53934 NaN NaN NaN NaN NaN NaN NaN 18.927 1 17.292 16.792 17.792 -1.6351 0 0 0 2.8426 1 2828 2828 0 0 1 + 49427 23147 32897 32918 48491 48491 -0.01932590410888224 VGLCSSGP 8 Unmodified _VGLCSSGP_ 0 0 0 REV__ENST00000575282.5_1_17:78185753-78186503:-|nuORF REV__ENST00000575282.5_1_17:78185753-78186503:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2006530761719 2 360.173264 718.331975 NaN NaN NaN NaN NaN NaN NaN 23.039 1 21.485 20.985 21.985 -1.5532 0 0 0 0.21486 1 3960 3960 2.8892 0 1 + 49428 23200 32898 32919 48492 48492 -0.03845752888253173 VGLDSSKLMAM 11 Unmodified _VGLDSSKLMAM_ 0 0 0 REV__ENST00000464470.1_1_13:32999759-32999885:-|nuORF REV__ENST00000464470.1_1_13:32999759-32999885:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.31396484375 2 576.293585 1150.57262 NaN NaN NaN NaN NaN NaN NaN 150.27 1 150.27 149.77 150.77 0 0 0 0 0.23087 1 30084 30084 7.609 0 1 + 49429 21938 32899 32920 48493 48493 0.0033527531679737876 VGLEDRKY 8 Unmodified _VGLEDRKY_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26513671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 13.608 1 12.598 12.098 13.098 -1.0098 0 0 0 0.21486 1 1984 1984 2.5775 0.27475 1 49430 2711 32900 32921 48494 48494 0.023328834091330464 VGLEDYIE 8 Unmodified _VGLEDYIE_ 0 0 0 REV__ENST00000568980.1_1_15:34781237-34781759:-|nuORF REV__ENST00000568980.1_1_15:34781237-34781759:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1757507324219 3 313.155286 936.444028 NaN NaN NaN NaN NaN NaN NaN 53.594 1 50.498 49.998 50.998 -3.0954 0 0 0 0.21486 1 9906 9906 1.8442 0 1 + 49431 23149 32901 32922 48495 48495 -0.026736203302789363 VGLEECNHECK 11 Unmodified _VGLEECNHECK_ 0 0 0 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7691650390625 2 630.771005 1259.52746 NaN NaN NaN NaN NaN NaN NaN 52.183 1 49.096 48.596 49.596 -3.0876 0 0 0 0.22632 1 9595 9595 0.026206 0 1 49432 6625 32902 32923 48496 48496 -0.09192575216388832 VGLEECNHECK 11 Unmodified _VGLEECNHECK_ 0 0 0 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7697143554688 2 630.771005 1259.52746 NaN NaN NaN NaN NaN NaN NaN 150.03 1 144.84 144.34 145.34 -5.1994 0 0 0 0.22632 1 29069 29069 0.026206 0 1 49433 6625 32902 32923 48497 48497 -0.09192575216388832 VGLEECNHECK 11 Unmodified _VGLEECNHECK_ 0 0 0 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7708129882812 2 630.771005 1259.52746 NaN NaN NaN NaN NaN NaN NaN 170.88 1 165.96 165.46 166.46 -4.9149 0 0 0 0.22632 1 33803 33803 0.00056442 0 1 49434 6625 32902 32923 48498 48498 -0.09192575216388832 VGLEECNHECK 11 Unmodified _VGLEECNHECK_ 0 0 0 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7682495117188 2 630.771005 1259.52746 NaN NaN NaN NaN NaN NaN NaN 106.8 1 102.7 102.2 103.2 -4.0913 0 0 0 0.22632 1 20536 20536 0.00056442 0 1 49435 6625 32902 32923 48499 48499 -0.09192575216388832 VGLEECNHECK 11 Unmodified _VGLEECNHECK_ 0 0 0 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.76708984375 2 630.771005 1259.52746 NaN NaN NaN NaN NaN NaN NaN 145.72 1 140.72 140.22 141.22 -5 0 0 0 0.22632 1 28187 28187 0.00056442 0 1 49436 6625 32902 32923 48500 48500 -0.09192575216388832 VGLFGGAS 8 Unmodified _VGLFGGAS_ 0 0 0 REV__ENST00000426740.6_3_1:161514508-161514637:-|nuORF REV__ENST00000426740.6_3_1:161514508-161514637:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 354.2278137207031 2 354.189771 706.36499 NaN NaN NaN NaN NaN NaN NaN 96.609 1 96.609 96.109 97.109 0 0 0 0 0.23711 1 18928 18928 0.0082765 0 1 + 49437 21570 32903 32924 48501 48501 6.1972260937182E-05 VGLFINFL 8 Unmodified _VGLFINFL_ 0 0 0 REV__DNAJB14|p.F206Lfs*48|2|0.34|ENSG00000164031|chr4:99908730-99908730|A/-|frameshift_variant REV__DNAJB14|p.F206Lfs*48|2|0.34|ENSG00000164031|chr4:99908730-99908730|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.1854248046875 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 63.114 1 63.114 62.614 63.614 0 0 0 0 0.21486 1 12130 12130 0.45834 0 1 + 49438 13718 32904 32925 48502 48502 0.0684846477084875 VGLFINFL 8 Unmodified _VGLFINFL_ 0 0 0 REV__DNAJB14|p.F206Lfs*48|2|0.34|ENSG00000164031|chr4:99908730-99908730|A/-|frameshift_variant REV__DNAJB14|p.F206Lfs*48|2|0.34|ENSG00000164031|chr4:99908730-99908730|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 308.2220458984375 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 77.96 1 74.497 73.997 74.997 -3.4633 0 0 0 0.21486 1 15223 15223 0.45834 0 1 + 49439 13718 32904 32925 48503 48503 0.0684846477084875 VGLFINFL 8 Unmodified _VGLFINFL_ 0 0 0 REV__DNAJB14|p.F206Lfs*48|2|0.34|ENSG00000164031|chr4:99908730-99908730|A/-|frameshift_variant REV__DNAJB14|p.F206Lfs*48|2|0.34|ENSG00000164031|chr4:99908730-99908730|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.2223815917969 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 91.125 1 87.03 86.53 87.53 -4.0946 0 0 0 0.21486 1 17364 17364 0.45834 0 1 + 49440 13718 32904 32925 48504 48504 0.0684846477084875 VGLFRKLNTR 10 Unmodified _VGLFRKLNTR_ 0 0 0 REV__ENST00000528441.1_3_16:66609021-66612901:+|nuORF REV__ENST00000528441.1_3_16:66609021-66612901:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2874755859375 2 602.369664 1202.72478 NaN NaN NaN NaN NaN NaN NaN 13.867 1 12.694 12.194 13.194 -1.173 0 0 0 0.22588 1 1834 1834 1.4819 0 1 + 49441 14531 32905 32926 48505 48505 0.13152180170868633 VGLFSGIG 8 Unmodified _VGLFSGIG_ 0 0 0 REV__tr|U7SL79|U7SL79_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02009PE=4SV=1 REV__tr|U7SL79|U7SL79_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02009PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2129821777344 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 18.112 1 16.801 16.301 17.301 -1.3109 0 0 0 0.2396 1 2933 2933 0 0 1 + 49442 24941 32906 32927 48506 48506 0.027670567772588583 VGLFSGIG 8 Unmodified _VGLFSGIG_ 0 0 0 REV__tr|U7SL79|U7SL79_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02009PE=4SV=1 REV__tr|U7SL79|U7SL79_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02009PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21343994140625 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 178.97 1 174.1 173.6 174.6 -4.8686 0 0 0 0.2396 1 35637 35637 0 0 1 + 49443 24941 32906 32927 48507 48507 0.027670567772588583 VGLFSGIG 8 Unmodified _VGLFSGIG_ 0 0 0 REV__tr|U7SL79|U7SL79_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02009PE=4SV=1 REV__tr|U7SL79|U7SL79_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02009PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2138671875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 179.17 1 174.31 173.81 174.81 -4.868 0 0 0 0.2396 1 35681 35681 0 0 1 + 49444 24941 32906 32927 48508 48508 0.027670567772588583 VGLFVLLAFL 10 Unmodified _VGLFVLLAFL_ 0 0 0 ENSG00000080166|ENST00000377028|DCT;nc|ENSG00000080166|P40126-2|DCT ENSG00000080166|ENST00000377028|DCT ENSG00000080166|ENST00000377028|DCT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 546.5230712890625 2 546.346803 1090.67905 NaN NaN NaN NaN NaN NaN NaN 164.57 1 164.57 164.07 165.07 0 0 0 0 2.8426 1 33294 33294 0.84494 0 1 49445 1607 32907 32928 48509 48509 0.13734141935947264 VGLFVLNR 8 Unmodified _VGLFVLNR_ 0 0 0 REV__ENSG00000268696|ENST00000600766|ZNF723 REV__ENSG00000268696|ENST00000600766|ZNF723 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 307.191650390625 3 306.523755 916.549437 -1.592 -0.00048799 1.5068 0.00046186 -0.085255 -2.6133E-05 306.5242808460847 20.193 0.51987 18.557 18.261 18.781 -1.6351 29 14 3 0 0 0 8448 1 3080 3080 0.12286 0 1 1461200 + 49446 19908 32908 32929 48510 48510 0.08782385376662205 VGLGFGIG 8 Unmodified _VGLGFGIG_ 0 0 0 ENST00000293829.8_1_17:7342554-7342710:+|nuORF ENST00000293829.8_1_17:7342554-7342710:+|nuORF ENST00000293829.8_1_17:7342554-7342710:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2069396972656 2 360.207964 718.401375 NaN NaN NaN NaN NaN NaN NaN 88.349 1 84.599 84.099 85.099 -3.7501 0 0 0 0.2396 1 16909 16909 0 0 1 49447 8487 32909 32930 48511 48511 0.030910741228126426 VGLGKGRY 8 Unmodified _VGLGKGRY_ 0 0 0 nc|ENSG00000147099|Q9BY41-6|HDAC8;nc|ENSG00000147099|Q9BY41-5|HDAC8;nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8 nc|ENSG00000147099|Q9BY41-6|HDAC8 nc|ENSG00000147099|Q9BY41-6|HDAC8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.25 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 12.92 1 12.92 12.42 13.42 0 0 0 0 0.21486 1 1832 1832 5.7604 0 1 49448 4680 32910 32931 48512 48512 0.05653239308469438 VGLGPHVQR 9 Unmodified _VGLGPHVQR_ 0 0 0 REV__ENST00000338483.6_1_22:38610719-38611061:+|nuORF REV__ENST00000338483.6_1_22:38610719-38611061:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77935791015625 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 154.65 1 149.88 149.38 150.38 -4.7791 0 0 0 0.19656 1 30741 30741 0.029283 0 1 + 49449 20682 32911 32932 48513 48513 0.06343715602793054 VGLHFICAAL 10 Unmodified _VGLHFICAAL_ 0 0 0 ENST00000495794.5_1_5:864585-881375:-|nuORF ENST00000495794.5_1_5:864585-881375:-|nuORF ENST00000495794.5_1_5:864585-881375:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26708984375 2 522.288963 1042.56337 0.20013 0.00010453 -4.2727 -0.0022316 -4.0726 -0.0021271 522.2851911537083 131.15 0.10629 131.15 131.08 131.19 0 4 2 2 0 0 0 0.50781 1 25933 25933 0.26539 0.19213 1 920890 49450 10569 32912 32933 48514 48514 0.043792948134068865 VGLHGPVA 8 Unmodified _VGLHGPVA_ 0 0 0 REV__ENST00000477196.5_1_1:1025937-1026315:-|nuORF REV__ENST00000477196.5_1_1:1025937-1026315:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2184143066406 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 43.258 1 40.492 39.992 40.992 -2.7661 0 0 0 0.23711 1 7807 7807 0.12286 0 1 + 49451 22113 32913 32934 48515 48515 0.03889878871370911 VGLHLHPR 8 Unmodified _VGLHLHPR_ 0 0 0 REV__ENST00000500800.2_1_4:144435011-144435338:-|nuORF REV__ENST00000500800.2_1_4:144435011-144435338:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.23065185546875 3 310.187366 927.540269 -0.56699 -0.00017587 0.66542 0.00020641 0.098432 3.0532E-05 310.1874863037228 16.46 0.61681 16.46 16.199 16.816 0 30 17 3 0 0 0 0.83982 1 2556 2556 1.6526 0 1 767970 + 49452 22427 32914 32935 48516 48516 0.07360036810985093 VGLHLHPR 8 Unmodified _VGLHLHPR_ 0 0 0 REV__ENST00000500800.2_1_4:144435011-144435338:-|nuORF REV__ENST00000500800.2_1_4:144435011-144435338:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.23065185546875 3 310.187366 927.540269 -0.56699 -0.00017587 0.66542 0.00020641 0.098432 3.0532E-05 310.1874863037228 16.46 0.61681 16.46 16.199 16.816 0 30 17 3 0 0 0 1.0271 1 2556 2556 1.6526 0 1 767970 + 49453 22427 32914 32935 48517 48517 0.07360036810985093 VGLIIINFLKK 11 Unmodified _VGLIIINFLKK_ 0 0 0 REV__MFSD11|p.T184Dfs*13|1|0.36|ENSG00000092931|chr17:76744370-76744371|-/G|frameshift_variant REV__MFSD11|p.T184Dfs*13|1|0.36|ENSG00000092931|chr17:76744370-76744371|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 629.2756958007812 2 629.418291 1256.82203 NaN NaN NaN NaN NaN NaN NaN 165.28 1 160.49 159.99 160.99 -4.7898 0 0 0 0.22632 1 33088 33088 0 0 1 + 49454 14591 32915 32936 48518 48518 0.20389149327138512 VGLIMAQY 8 Unmodified _VGLIMAQY_ 0 0 0 REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 448.3506164550781 2 447.741314 893.468075 -0.027328 -1.2236E-05 0.22744 0.00010183 0.20011 8.9598E-05 447.7413270303582 93.407 0.86735 89.563 89.123 89.99 -3.844 57 24 3 0 0 0 0.83271 1 17842 17842 2.8892 2.8892 1 8378100 + 49455 13085 32916 32937 48519 48519 0.017079416223850785 VGLIMAQY 8 Unmodified _VGLIMAQY_ 0 0 0 REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 447.741314 893.468075 0.076626 3.4309E-05 0.11687 5.2328E-05 0.1935 8.6636E-05 447.74131026135524 89.861 0.76032 89.861 89.461 90.221 0 0.22289 -2.2646E-05 NaN 2.8892 48 21 3 NaN NaN NaN NaN 0 NaN NaN 0 9606500 + 49456 13085 32916 32937 0.017079416223850785 VGLIMAQY 8 Unmodified _VGLIMAQY_ 0 0 0 REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 447.741314 893.468075 -0.11306 -5.062E-05 0.2362 0.00010576 0.12314 5.5136E-05 447.7413473225231 93.582 0.7555 89.591 89.142 89.897 -3.9907 -0.047318 8.4211E-05 NaN 2.8892 55 21 3 NaN NaN NaN NaN 0 NaN NaN 0 10285000 + 49457 13085 32916 32937 0.017079416223850785 VGLIMAQY 8 Unmodified _VGLIMAQY_ 0 0 0 REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 447.741314 893.468075 0.17199 7.7005E-05 -0.017801 -7.9704E-06 0.15418 6.9035E-05 447.74123947712667 93.682 0.84212 89.538 89.083 89.925 -4.1435 -0.099836 -0.00014324 NaN 2.8892 59 24 3 NaN NaN NaN NaN 0 NaN NaN 0 11866000 + 49458 13085 32916 32937 0.017079416223850785 VGLIMAQY 8 Unmodified _VGLIMAQY_ 0 0 0 REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 447.741314 893.468075 -0.027328 -1.2236E-05 0.22744 0.00010183 0.20011 8.9598E-05 447.7413270303582 93.407 0.86735 89.563 89.123 89.99 -3.844 -0.075734 7.6367E-05 NaN 2.8892 57 24 3 NaN NaN NaN NaN 0 NaN NaN 0 8378100 + 49459 13085 32916 32937 0.017079416223850785 VGLIPHLL 8 Unmodified _VGLIPHLL_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-3|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1 nc|ENSG00000137409|Q9NZJ7-3|MTCH1 nc|ENSG00000137409|Q9NZJ7-3|MTCH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 431.0921325683594 2 431.281463 860.548374 0.16568 7.1456E-05 0.10097 4.3545E-05 0.26665 0.000115 431.2814103554963 24.049 0.40848 24.049 23.792 24.201 0 18 11 2 0 0 0 1.028 1 4130 4130 0.79363 0 1 1027300 49460 4082 32917 32938 48520 48520 0.1125217100776581 VGLIPHLL 8 Unmodified _VGLIPHLL_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-3|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1 nc|ENSG00000137409|Q9NZJ7-3|MTCH1 nc|ENSG00000137409|Q9NZJ7-3|MTCH1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 431.281463 860.548374 0.060605 2.6138E-05 -0.064127 -2.7657E-05 -0.0035223 -1.5191E-06 431.28130119469193 25.647 0.37344 24.012 23.823 24.197 -1.6347 -0.013358 -0.00012427 NaN 0.79363 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 921570 49461 4082 32917 32938 0.1125217100776581 VGLIPHLL 8 Unmodified _VGLIPHLL_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-3|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1 nc|ENSG00000137409|Q9NZJ7-3|MTCH1 nc|ENSG00000137409|Q9NZJ7-3|MTCH1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 431.281463 860.548374 -0.27642 -0.00011922 0.1609 6.9392E-05 -0.11553 -4.9824E-05 431.28143410306177 25.938 0.30694 24.015 23.815 24.122 -1.9222 -0.010081 6.9824E-05 NaN 0.79363 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 682720 49462 4082 32917 32938 0.1125217100776581 VGLIVPHILRK 11 Unmodified _VGLIVPHILRK_ 0 0 0 tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1 tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1 tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7579345703125 2 622.913707 1243.81286 NaN NaN NaN NaN NaN NaN NaN 50.306 1 47.261 46.761 47.761 -3.0453 0 0 0 0.23698 1 9213 9213 1.4819 0 1 49463 25922 32918 32939 48521 48521 0.20070800761482133 VGLIVPHILRK 11 Unmodified _VGLIVPHILRK_ 0 0 0 tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1 tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1 tr|U7SIS2|U7SIS2_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02157PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7741088867188 2 622.913707 1243.81286 NaN NaN NaN NaN NaN NaN NaN 123.44 1 118.85 118.35 119.35 -4.5926 0 0 0 0.22632 1 23765 23765 0 0 1 49464 25922 32918 32939 48522 48522 0.20070800761482133 VGLKEKIKK 9 Unmodified _VGLKEKIKK_ 0 0 0 REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1 REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27099609375 2 521.852784 1041.69102 0.35942 0.00018757 -2.4959 -0.0013025 -2.1364 -0.0011149 521.8497322266757 145.22 0.21458 140.27 140.2 140.42 -4.9445 6 5 2 0 0 0 0.65257 1 28085 28085 0 0 1 1434300 + 49465 24963 32919 32940 48523 48523 0.17183758679129824 VGLKERIHHR 10 Unmodified _VGLKERIHHR_ 0 0 0 tr|U7SJV0|U7SJV0_FUSNULipoprotein-releasingsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02096PE=3SV=1 tr|U7SJV0|U7SJV0_FUSNULipoprotein-releasingsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02096PE=3SV=1 tr|U7SJV0|U7SJV0_FUSNULipoprotein-releasingsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02096PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7608642578125 2 622.870363 1243.72617 NaN NaN NaN NaN NaN NaN NaN 115.75 1 111.39 110.89 111.89 -4.3585 0 0 0 2.8426 1 22282 22282 0 0 1 49466 25954 32920 32941 48524 48524 0.11405814259637737 VGLKKLILLP 10 Unmodified _VGLKKLILLP_ 0 0 0 REV__ENST00000590156.5_1_18:43671730-43674948:-|nuORF REV__ENST00000590156.5_1_18:43671730-43674948:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7711791992188 2 547.389003 1092.76345 NaN NaN NaN NaN NaN NaN NaN 14.746 1 13.632 13.132 14.132 -1.1142 0 0 0 0.22588 1 2230 2230 0.45834 0 1 + 49467 23318 32921 32942 48525 48525 0.2207809275271302 VGLKTTMEKA 10 Unmodified _VGLKTTMEKA_ 0 0 0 REV__nc|ENSG00000173706|Q9ULI3-2|HEG1 REV__nc|ENSG00000173706|Q9ULI3-2|HEG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2143859863281 3 359.870603 1076.58998 0.10951 3.9409E-05 0.15074 5.4248E-05 0.26025 9.3657E-05 359.8706164974861 36.921 0.40766 34.573 34.346 34.754 -2.3479 17 11 2 0 0 0 0.76317 1 6552 6552 1.5923 0.11038 1 371520 + 49468 18370 32922 32943 48526 48526 0.05474938914107952 VGLKYLLL 8 Unmodified _VGLKYLLL_ 0 0 0 nc|ENSG00000168234|Q8N584-2|TTC39C;ENSG00000168234|ENST00000317571|TTC39C nc|ENSG00000168234|Q8N584-2|TTC39C nc|ENSG00000168234|Q8N584-2|TTC39C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2391357421875 2 459.804771 917.59499 NaN NaN NaN NaN NaN NaN NaN 56.79 1 53.896 53.396 54.396 -2.8944 0 0 0 0.21486 1 10889 10889 2.8892 0 1 49469 5889 32923 32944 48527 48527 0.13289610839046873 VGLLAHTRQR 10 Unmodified _VGLLAHTRQR_ 0 0 0 ENST00000570103.5_1_16:75327852-75340352:-|nuORF ENST00000570103.5_1_16:75327852-75340352:-|nuORF ENST00000570103.5_1_16:75327852-75340352:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3146362304688 2 575.843813 1149.67307 0.3987 0.00022959 -1.1065 -0.00063718 -0.70781 -0.00040759 575.8430280591883 154.83 2.5682 149.58 147.54 150.11 -5.2527 156 72 3 0 0 0 0.75133 1 29937 29937 5.2969 1.7004 1 6641300 49470 11412 32924 32945 48528 48528 0.10422436476983421 VGLLFILRL 9 Unmodified _VGLLFILRL_ 0 0 0 ENST00000217958.7_1_X:107331274-107331995:-|nuORF ENST00000217958.7_1_X:107331274-107331995:-|nuORF ENST00000217958.7_1_X:107331274-107331995:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2709350585938 2 522.35242 1042.69029 NaN NaN NaN NaN NaN NaN NaN 95.398 1 91.207 90.707 91.707 -4.1911 0 0 0 0.19624 1 18206 18206 0 0 1 49471 8123 32925 32946 48529 48529 0.17064964030078045 VGLLGLLKW 9 Unmodified _VGLLGLLKW_ 0 0 0 ENSG00000134516|ENST00000520908|DOCK2;nc|ENSG00000134516|Q92608-2|DOCK2;DOCK2|p.N1321Kfs*10|1|0.37|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;DOCK2|p.M1388Gfs*7|1|0.05|ENSG00000134516|chr5:170050344-170050345|-/AGGATGCTCATTAGAGATTT|frameshift_variant ENSG00000134516|ENST00000520908|DOCK2 ENSG00000134516|ENST00000520908|DOCK2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.9990234375 3 333.551422 997.632438 0.68551 0.00022865 0.56163 0.00018733 1.2471 0.00041598 333.5527940551805 27.189 0.64065 25.407 25.202 25.842 -1.7821 20 17 2 0 0 0 0.88413 1 4900 4900 1.0715 0.61312 1 1762700 49472 3858 32926 32947 48530 48530 0.1335270210465751 VGLLHFFF 8 Unmodified _VGLLHFFF_ 0 0 0 REV__nc|ENSG00000107014|P04090-2|RLN2 REV__nc|ENSG00000107014|P04090-2|RLN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27374267578125 2 490.273638 978.532724 NaN NaN NaN NaN NaN NaN NaN 15.883 1 14.662 14.162 15.162 -1.2219 0 0 0 0.21486 1 2255 2255 2.8892 0 1 + 49473 15072 32927 32948 48531 48531 0.04259884490716104 VGLLIIFLII 10 Unmodified _VGLLIIFLII_ 0 0 0 REV__NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant REV__NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 557.2809448242188 2 557.385929 1112.7573 0.62727 0.00034963 -0.46284 -0.00025798 0.16444 9.1654E-05 557.8880580829986 45.935 0.10341 45.935 45.864 45.968 0 4 2 2 0 0 0 0.76679 1 8639 8639 0.45834 0 1 306770 + 49474 16200 32928 32949 48532 48532 0.20543574521161645 VGLLKKLGI 9 Unmodified _VGLLKKLGI_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.2173156738281 3 314.223306 939.648088 NaN NaN NaN NaN NaN NaN NaN 32.717 1 32.717 32.217 33.217 0 0 0 0 0.23508 1 5952 5952 0.26902 0 1 49475 3543 32929 32950 48533 48533 0.17584988621683806 VGLLKKLGI 9 Unmodified _VGLLKKLGI_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.2225341796875 3 314.223306 939.648088 NaN NaN NaN NaN NaN NaN NaN 23.42 1 21.867 21.367 22.367 -1.5532 0 0 0 0.23508 1 4040 4040 0.26902 0 1 49476 3543 32929 32950 48534 48534 0.17584988621683806 VGLLLAVKLLL 11 Unmodified _VGLLLAVKLLL_ 0 0 0 REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3203125 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 124.75 1 124.75 124.25 125.25 0 0 0 0 0.22632 1 24602 24602 0 0 1 + 49477 16278 32930 32951 48535 48535 0.23594648441235222 VGLLLAVKLLL 11 Unmodified _VGLLLAVKLLL_ 0 0 0 REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3241577148438 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 135.6 1 135.6 135.1 136.1 0 0 0 0 0.22632 1 26862 26862 0 0 1 + 49478 16278 32930 32951 48536 48536 0.23594648441235222 VGLLLAVKLLL 11 Unmodified _VGLLLAVKLLL_ 0 0 0 REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3317260742188 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 135.67 1 135.67 135.17 136.17 0 0 0 0 0.22632 1 26876 26876 0.026206 0 1 + 49479 16278 32930 32951 48537 48537 0.23594648441235222 VGLLLAVKLLL 11 Unmodified _VGLLLAVKLLL_ 0 0 0 REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3378295898438 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 178.72 1 178.72 178.22 179.22 0 0 0 0 0.23698 1 37019 37019 0.35063 0.35063 1 + 49480 16278 32930 32951 48538 48538 0.23594648441235222 VGLLLAVKLLL 11 Unmodified _VGLLLAVKLLL_ 0 0 0 REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3392333984375 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 93.145 1 89.154 88.654 89.654 -3.9907 0 0 0 0.23698 1 18243 18243 0.35063 0.35063 1 + 49481 16278 32930 32951 48539 48539 0.23594648441235222 VGLLLAVKLLL 11 Unmodified _VGLLLAVKLLL_ 0 0 0 REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3178100585938 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 128.83 1 124.2 123.7 124.7 -4.6292 0 0 0 0.22632 1 25401 25401 0 0 1 + 49482 16278 32930 32951 48540 48540 0.23594648441235222 VGLLLAVKLLL 11 Unmodified _VGLLLAVKLLL_ 0 0 0 REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.330322265625 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 108.97 1 104.52 104.02 105.02 -4.4518 0 0 0 0.22632 1 20913 20913 0 0 1 + 49483 16278 32930 32951 48541 48541 0.23594648441235222 VGLLLAVKLLL 11 Unmodified _VGLLLAVKLLL_ 0 0 0 REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3270874023438 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 162.03 1 156.89 156.39 157.39 -5.1438 0 0 0 0.22632 1 31471 31471 0.0072825 0 1 + 49484 16278 32930 32951 48542 48542 0.23594648441235222 VGLLLAVKLLL 11 Unmodified _VGLLLAVKLLL_ 0 0 0 REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3295288085938 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 110.68 1 106.45 105.95 106.95 -4.2289 0 0 0 0.23698 1 21300 21300 1.4819 1.0236 1 + 49485 16278 32930 32951 48543 48543 0.23594648441235222 VGLLLLLIIW 10 Unmodified _VGLLLLLIIW_ 0 0 0 ENSG00000182035|ENST00000537425|ADIG ENSG00000182035|ENST00000537425|ADIG ENSG00000182035|ENST00000537425|ADIG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3259887695312 2 576.891378 1151.7682 0.46928 0.00027072 0.079377 4.5792E-05 0.54865 0.00031651 576.8920544963955 125.12 0.23837 120.35 120.23 120.47 -4.7681 8 6 2 0 0 0 0.91149 1 24023 24023 0.45834 0 1 1221500 49486 6760 32931 32952 48544 48544 0.19838976895471205 VGLLLLLLLLA 11 Unmodified _VGLLLLLLLLA_ 0 0 0 REV__WFIKKN2|p.S143Pfs*32|1|0.54|ENSG00000173714|chr17:50839711-50839712|-/CC|frameshift_variant REV__WFIKKN2|p.S143Pfs*32|1|0.54|ENSG00000173714|chr17:50839711-50839712|-/CC|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3189086914062 2 575.91231 1149.81007 0.24728 0.00014241 2.5039 0.001442 2.7511 0.0015844 575.9128544291688 153.78 0.13896 148.51 148.43 148.57 -5.2669 5 3 2 0 0 0 0.8912 1 29824 29824 0 0 1 786610 + 49487 18371 32932 32953 48545 48545 0.2411553258400545 VGLLLNFM 8 Unmodified _VGLLLNFM_ 0 0 0 CON__Q3SZH5 CON__Q3SZH5 CON__Q3SZH5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7587585449219 2 453.759507 905.50446 NaN NaN NaN NaN NaN NaN NaN 151.89 1 146.71 146.21 147.21 -5.1759 0 0 0 0.23749 1 29434 29434 0.12286 0.11459 1 + 49488 696 32933 32954 48546 48546 0.047928185191153716 VGLLLPKLP 9 Unmodified _VGLLLPKLP_ 0 0 0 nc|ENSG00000182333|P07098-2|LIPF;nc|ENSG00000182333|P07098-4|LIPF;ENSG00000182333|ENST00000238983|LIPF;nc|ENSG00000182333|P07098-3|LIPF nc|ENSG00000182333|P07098-2|LIPF nc|ENSG00000182333|P07098-2|LIPF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 475.3263244628906 2 475.325871 948.637189 NaN NaN NaN NaN NaN NaN NaN 177.89 1 172.99 172.49 173.49 -4.9088 0 0 0 0.23508 1 35484 35484 0.6015 0.076735 1 49489 6784 32934 32955 48547 48547 0.1608158624742373 VGLLPHGG 8 Unmodified _VGLLPHGG_ 0 0 0 REV__ENSG00000107984|ENST00000373970|DKK1 REV__ENSG00000107984|ENST00000373970|DKK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2186584472656 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 57.456 1 54.28 53.78 54.78 -3.1761 0 0 0 0.23294 1 10709 10709 1.7423 1.6194 1 + 49490 15105 32935 32956 48548 48548 0.038898788713822796 VGLLQPLLGR 10 Unmodified _VGLLQPLLGR_ 0 0 0 REV__ENST00000484495.5_1_7:95799231-95818686:-|nuORF REV__ENST00000484495.5_1_7:95799231-95818686:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2755126953125 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 164.39 1 164.39 163.89 164.89 0 0 0 0 2.8426 1 33238 33238 0.26539 0 1 + 49491 13843 32936 32957 48549 48549 0.1408658801931324 VGLLSPMV 8 Unmodified _VGLLSPMV_ 0 0 0 ENSG00000173226|ENST00000310864|IQCB1;nc|ENSG00000173226|Q15051-3|IQCB1 ENSG00000173226|ENST00000310864|IQCB1 ENSG00000173226|ENST00000310864|IQCB1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 408.2383117675781 2 408.238407 814.462261 NaN NaN NaN NaN NaN NaN NaN 95.589 1 91.708 91.208 92.208 -3.881 0 0 0 0.21486 1 18342 18342 2.8892 0 1 49492 6279 32937 32958 48550 48550 0.04760843110727819 VGLLTVTT 8 Unmodified _VGLLTVTT_ 0 0 0 REV__nc|ENSG00000198925|Q7Z3C6-3|ATG9A REV__nc|ENSG00000198925|Q7Z3C6-3|ATG9A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 402.3035888671875 2 402.247286 802.48002 NaN NaN NaN NaN NaN NaN NaN 119.38 1 119.38 118.88 119.88 0 0 0 0 0.21486 1 23521 23521 2.5775 1.7838 1 + 49493 19484 32938 32959 48551 48551 0.0708788163723284 VGLLVLLLLG 10 Unmodified _VGLLVLLLLG_ 0 0 0 ENSG00000102109|ENST00000218230|PCSK1N ENSG00000102109|ENST00000218230|PCSK1N ENSG00000102109|ENST00000218230|PCSK1N MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.7874755859375 2 505.354628 1008.6947 NaN NaN NaN NaN NaN NaN NaN 163.24 1 158.45 157.95 158.95 -4.7898 0 0 0 2.8426 1 32530 32530 0.043787 0 1 49494 2110 32939 32960 48552 48552 0.1907042845300566 VGLLWFVL 8 Unmodified _VGLLWFVL_ 0 0 0 REV__ENST00000590335.1_1_19:45974274-45974658:+|nuORF REV__ENST00000590335.1_1_19:45974274-45974658:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1602783203125 3 316.196868 945.568775 NaN NaN NaN NaN NaN NaN NaN 28.231 1 26.234 25.734 26.734 -1.9962 0 0 0 0.21486 1 4755 4755 1.8442 0 1 + 49495 23319 32940 32961 48553 48553 0.09381341667574361 VGLMCRRK 8 Unmodified _VGLMCRRK_ 0 0 0 REV__ENST00000486056.1_1_9:35735127-35735205:+|nuORF REV__ENST00000486056.1_1_9:35735127-35735205:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.5145263671875 3 321.51773 961.53136 NaN NaN NaN NaN NaN NaN NaN 20.759 1 19.362 18.862 19.862 -1.3966 0 0 0 0.21486 1 3483 3483 0.45834 0 1 + 49496 22231 32941 32962 48554 48554 0.04905603858651375 VGLNKRTCA 9 Unmodified _VGLNKRTCA_ 0 0 0 REV__nc|ENSG00000134461|Q6P6B7-2|ANKRD16 REV__nc|ENSG00000134461|Q6P6B7-2|ANKRD16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.15277099609375 3 321.179771 960.517485 NaN NaN NaN NaN NaN NaN NaN 74.63 1 71.036 70.536 71.536 -3.594 0 0 0 0.23508 1 14177 14177 1.1933 0 1 + 49497 16213 32942 32963 48555 48555 0.035646496311983356 VGLPCFFH 8 Unmodified _VGLPCFFH_ 0 0 0 REV__ENST00000466987.1_1_3:184021130-184021370:+|nuORF REV__ENST00000466987.1_1_3:184021130-184021370:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2289733886719 2 460.228374 918.442194 NaN NaN NaN NaN NaN NaN NaN 17.423 1 15.909 15.409 16.409 -1.5148 0 0 0 0.21486 1 2528 2528 0.79363 0 1 + 49498 21974 32943 32964 48556 48556 -0.020289078292194063 VGLPEKEFDIR 11 Unmodified _VGLPEKEFDIR_ 0 0 0 REV__ENSG00000122729|ENST00000309951|ACO1 REV__ENSG00000122729|ENST00000309951|ACO1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 434.92425537109375 3 434.906594 1301.69795 NaN NaN NaN NaN NaN NaN NaN 11.965 1 10.845 10.345 11.345 -1.1206 0 0 0 0.23698 1 1395 1395 0.45452 0 1 + 49499 12919 32944 32965 48557 48557 0.05917026769043332 VGLPLAPGTH 10 Unmodified _VGLPLAPGTH_ 0 0 0 ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.77850341796875 2 481.276909 960.539266 -0.24277 -0.00011684 0.50743 0.00024421 0.26466 0.00012737 481.277128205733 57.277 1.9408 57.277 56.536 58.477 0 96 55 2 0 0 0 0.71097 1 10890 10890 10.074 0 1 1919100 49500 7265 32945 32966 48558 48558 0.05741777651417124 VGLPVSPA 8 Unmodified _VGLPVSPA_ 0 0 0 ENST00000574857.1_1_17:2267300-2267525:+|nuORF ENST00000574857.1_1_17:2267300-2267525:+|nuORF ENST00000574857.1_1_17:2267300-2267525:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 370.24420166015625 2 370.221072 738.42759 NaN NaN NaN NaN NaN NaN NaN 105.01 1 105.01 104.51 105.51 0 0 0 0 0.21486 1 20641 20641 2.8892 0 1 49501 11446 32946 32967 48559 48559 0.047913432942777945 VGLQKERT 8 Unmodified _VGLQKERT_ 0 0 0 ENST00000308025.7_1_12:49223885-49224209:-|nuORF ENST00000308025.7_1_12:49223885-49224209:-|nuORF ENST00000308025.7_1_12:49223885-49224209:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.24102783203125 3 310.85042 929.529429 -0.21785 -6.772E-05 0.20966 6.5173E-05 -0.0081953 -2.5475E-06 310.8504324026171 19.085 0.41643 17.689 17.467 17.884 -1.3966 25 11 3 0 0 0 1.028 1 3172 3172 0.45834 0 1 3529400 49502 8622 32947 32968 48560 48560 0.06184589646045424 VGLQLLCEVI 10 Unmodified _VGLQLLCEVI_ 0 0 0 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.787353515625 2 543.81501 1085.61547 NaN NaN NaN NaN NaN NaN NaN 69.47 1 65.933 65.433 66.433 -3.5362 0 0 0 2.8426 1 13079 13079 0.043787 0 1 + 49503 16781 32948 32969 48561 48561 0.07608413436537376 VGLRALLWGP 10 Unmodified _VGLRALLWGP_ 0 0 0 ENST00000591462.5_1_19:11560227-11561639:+|nuORF ENST00000591462.5_1_19:11560227-11561639:+|nuORF ENST00000591462.5_1_19:11560227-11561639:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.23651123046875 3 361.222076 1080.6444 NaN NaN NaN NaN NaN NaN NaN 17.251 1 15.736 15.236 16.236 -1.5148 0 0 0 2.8426 1 2495 2495 0.043787 0 1 49504 11622 32949 32970 48562 48562 0.10730318847868148 VGLRCLHL 8 Unmodified _VGLRCLHL_ 0 0 0 ENST00000495183.5_1_6:29913456-29913504:+|nuORF ENST00000495183.5_1_6:29913456-29913504:+|nuORF ENST00000495183.5_1_6:29913456-29913504:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.1811218261719 3 304.181224 909.521842 NaN NaN NaN NaN NaN NaN NaN 67.094 1 67.094 66.594 67.594 0 0 0 0 0.21486 1 12965 12965 0.45834 0 1 49505 10563 32950 32971 48563 48563 0.06346158844780803 VGLRDQMAGP 10 Unmodified _VGLRDQMAGP_ 0 0 0 REV__ENST00000607047.1_1_8:38240229-38240670:+|nuORF REV__ENST00000607047.1_1_8:38240229-38240670:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2784423828125 2 522.268758 1042.52296 NaN NaN NaN NaN NaN NaN NaN 15.963 1 15.963 15.463 16.463 0 0 0 0 0.22588 1 2461 2461 6.7232 0.51738 1 + 49506 23466 32951 32972 48564 48564 0.003403284230216741 VGLRGHAAA 9 Unmodified _VGLRGHAAA_ 0 0 0 ENST00000478796.5_1_1:45798697-45798943:-|nuORF ENST00000478796.5_1_1:45798697-45798943:-|nuORF ENST00000478796.5_1_1:45798697-45798943:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 426.7483215332031 2 426.245944 850.477334 0.10689 4.5563E-05 -0.14958 -6.376E-05 -0.042691 -1.8197E-05 426.2460301559795 135.56 0.7627 135.56 135.19 135.95 0 29 21 2 0 0 0 0.37087 1 26843 26843 1.2148 0 1 3590800 49507 10329 32952 32973 48565 48565 0.0461147102294035 VGLRKKLRHP 10 Unmodified _VGLRKKLRHP_ 0 0 0 ENST00000380062.9_1_9:26956414-26962023:+|nuORF ENST00000380062.9_1_9:26956414-26962023:+|nuORF ENST00000380062.9_1_9:26956414-26962023:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2935180664062 2 602.393474 1202.77239 1.0264 0.00061829 1.2599 0.00075896 2.2863 0.0013773 602.8970252243718 129.88 0.14227 125.24 125.15 125.3 -4.6359 5 3 2 0 0 0 1.1344 1 25606 25606 0 0 1 726790 49508 9308 32953 32974 48566 48566 0.17911879161738398 VGLRKNVN 8 Unmodified _VGLRKNVN_ 0 0 0 ENST00000263461.10_1_10:122668275-122668440:+|nuORF ENST00000263461.10_1_10:122668275-122668440:+|nuORF ENST00000263461.10_1_10:122668275-122668440:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 451.76318359375 2 450.274701 898.534849 0.11028 4.9656E-05 0.15567 7.0094E-05 0.26595 0.00011975 450.2746530387171 155.33 1.0087 150.05 149.64 150.65 -5.2854 84 27 4 0 0 0 8448 1 30089 30089 0.0082765 0 1 30718000 49509 8325 32954 32975 48567 48567 0.08152313228515595 VGLRKNVN 8 Unmodified _VGLRKNVN_ 0 0 0 ENST00000263461.10_1_10:122668275-122668440:+|nuORF ENST00000263461.10_1_10:122668275-122668440:+|nuORF ENST00000263461.10_1_10:122668275-122668440:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 450.274701 898.534849 0.23852 0.0001074 0.081247 3.6584E-05 0.31977 0.00014399 450.27462833348045 149.65 1.0901 149.65 149.16 150.25 0 -0.24364 -1.4209E-05 NaN 0.0082765 80 30 4 NaN NaN NaN NaN 0 NaN NaN 0 26587000 49510 8325 32954 32975 0.08152313228515595 VGLRKNVN 8 Unmodified _VGLRKNVN_ 0 0 0 ENST00000263461.10_1_10:122668275-122668440:+|nuORF ENST00000263461.10_1_10:122668275-122668440:+|nuORF ENST00000263461.10_1_10:122668275-122668440:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 450.274701 898.534849 0.028719 1.2932E-05 0.21081 9.4923E-05 0.23953 0.00010785 450.2746894182107 154.71 1.0578 149.93 149.46 150.52 -4.7791 0.034872 0.00010247 NaN 0.0082765 89 29 4 NaN NaN NaN NaN 0 NaN NaN 0 38470000 49511 8325 32954 32975 0.08152313228515595 VGLRKNVN 8 Unmodified _VGLRKNVN_ 0 0 0 ENST00000263461.10_1_10:122668275-122668440:+|nuORF ENST00000263461.10_1_10:122668275-122668440:+|nuORF ENST00000263461.10_1_10:122668275-122668440:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 450.274701 898.534849 0.11028 4.9656E-05 0.15567 7.0094E-05 0.26595 0.00011975 450.2746530387171 155.33 1.0087 150.05 149.64 150.65 -5.2854 0.15256 5.2812E-05 NaN 0.0082765 84 27 4 NaN NaN NaN NaN 0 NaN NaN 0 30718000 49512 8325 32954 32975 0.08152313228515595 VGLRKNVN 8 Unmodified _VGLRKNVN_ 0 0 0 ENST00000263461.10_1_10:122668275-122668440:+|nuORF ENST00000263461.10_1_10:122668275-122668440:+|nuORF ENST00000263461.10_1_10:122668275-122668440:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 450.274701 898.534849 0.33018 0.00014867 -0.09518 -4.2857E-05 0.235 0.00010582 450.27454294091336 155.2 1.3869 149.95 149.47 150.86 -5.2526 0.056208 -0.00017309 NaN 0.0082765 100 38 4 NaN NaN NaN NaN 0 NaN NaN 0 48078000 49513 8325 32954 32975 0.08152313228515595 VGLRKRERLL 10 Unmodified _VGLRKRERLL_ 0 0 0 REV__ENST00000601764.5_1_19:4697564-4723732:-|nuORF REV__ENST00000601764.5_1_19:4697564-4723732:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 620.2401733398438 2 620.404038 1238.79352 0.68915 0.00042755 2.1633 0.0013421 2.8525 0.0017697 620.9065766102178 166.84 0.17017 161.95 161.81 161.98 -4.8916 6 4 2 0 0 0 1.1344 1 32706 32706 0 0 1 30369000 + 49514 13746 32955 32976 48568 48568 0.18367844470594719 VGLRLVRLR 9 Unmodified _VGLRLVRLR_ 0 0 0 nc|ENSG00000291109|Q9UKY3-2|CES1P1;ENST00000563005.5_1_16:55854223-55866983:-|nuORF;nc|ENSG00000291109|Q9UKY3|CES1P1 nc|ENSG00000291109|Q9UKY3-2|CES1P1 nc|ENSG00000291109|Q9UKY3-2|CES1P1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2769165039062 2 541.369467 1080.72438 0.30271 0.00016388 -4.4266 -0.0023964 -4.1238 -0.0022325 541.8694559493582 147.43 0.17093 142.72 142.59 142.76 -4.7095 5 4 2 0 0 0 0.65257 1 29254 29254 0 0 1 2168200 49515 11326 32956 32977 48569 48569 0.18724805241686227 VGLRLYRR 8 Unmodified _VGLRLYRR_ 0 0 0 REV__THG1L|p.A28V|1|0.07|ENSG00000113272|chr5:157731523-157731523|C/T|missense_variant REV__THG1L|p.A28V|1|0.07|ENSG00000113272|chr5:157731523-157731523|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.89801025390625 3 344.885687 1031.63523 NaN NaN NaN NaN NaN NaN NaN 14.118 1 14.118 13.618 14.618 0 0 0 0 0.21486 1 2083 2083 0.45834 0 1 + 49516 24797 32957 32978 48570 48570 0.12067970282146234 VGLRRLDEL 9 Unmodified _VGLRRLDEL_ 0 0 0 REV__nc|ENSG00000145242|P54756-3|EPHA5 REV__nc|ENSG00000145242|P54756-3|EPHA5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5486755371094 3 357.548741 1069.62439 -0.78098 -0.00027924 1.094 0.00039115 0.31299 0.00011191 357.5491161959764 108.27 0.58769 103.95 103.69 104.28 -4.32 27 16 2 0 0 0 0.58077 2 21350 21350;21378 14.405 0 1 1475500 + 49517 16830 32958 32979 48571;48572 48571 0.09236523117237994 VGLRRRLSQR 10 Unmodified _VGLRRRLSQR_ 0 0 0 ENST00000491910.5_1_22:24981856-24984399:-|nuORF;ENST00000446942.5_1_22:24981856-24984799:-|nuORF;ENSG00000178026|ENST00000318753|LRRC75B ENST00000491910.5_1_22:24981856-24984399:-|nuORF ENST00000491910.5_1_22:24981856-24984399:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.22711181640625 4 310.948182 1239.76362 -0.93165 -0.0002897 0.72291 0.00022479 -0.20874 -6.4909E-05 310.94829843817274 13.936 0.21207 12.822 12.699 12.911 -1.1142 9 5 2 0 0 0 0.91149 1 2068 2068 0.15932 0.064481 1 242410 49518 6551 32959 32980 48573 48573 0.15332905525247043 VGLRRRRAP 9 Unmodified _VGLRRRRAP_ 0 0 0 REV__nc|ENSG00000160117|Q8NAG6-1|ANKLE1 REV__nc|ENSG00000160117|Q8NAG6-1|ANKLE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.9015808105469 3 360.900219 1079.67883 NaN NaN NaN NaN NaN NaN NaN 19.18 1 19.18 18.68 19.68 0 0 0 0 0.23508 1 3123 3123 0.26902 0.033176 1 + 49519 17395 32960 32981 48574 48574 0.14217579779324296 VGLSFGDTEY 10 Unmodified _VGLSFGDTEY_ 0 0 0 REV__ENSG00000181915|ENST00000373783|ADO REV__ENSG00000181915|ENST00000373783|ADO MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.783935546875 2 544.250754 1086.48696 0.036764 2.0009E-05 -1.683 -0.00091599 -1.6463 -0.00089598 544.2500999704126 51.968 0.82477 49.086 48.866 49.691 -2.8824 35 23 2 0 0 0 0.54036 1 9969 9969 37.974 15.316 1 5067100 + 49520 18746 32961 32982 48575 48575 -0.05282850272851647 VGLSHLTLEI 10 Unmodified _VGLSHLTLEI_ 0 0 0 REV__ENST00000473065.1_1_2:112754988-112760808:+|nuORF REV__ENST00000473065.1_1_2:112754988-112760808:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.27099609375 2 541.316232 1080.61791 NaN NaN NaN NaN NaN NaN NaN 15.253 1 14.031 13.531 14.531 -1.2219 0 0 0 0.22588 1 2122 2122 6.7232 0.99131 1 + 49521 17141 32962 32983 48576 48576 0.08082585165857381 VGLSKCEIKV 10 Unmodified _VGLSKCEIKV_ 0 0 0 nc|ENSG00000138668|Q14103-3|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENST00000514325.1_1_4:83277919-83278597:-|nuORF nc|ENSG00000138668|Q14103-3|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2122497558594 3 359.210849 1074.61072 -0.24575 -8.8275E-05 -0.27992 -0.00010055 -0.52567 -0.00018883 359.2108888427 18.858 0.30726 17.547 17.351 17.658 -1.3109 24 8 4 0 0 0 0.75844 1 3080 3080 3.0723 0.57378 1 804050 49522 4197 32963 32984 48577 48577 0.07639529293783198 VGLSKCEIKV 10 Unmodified _VGLSKCEIKV_ 0 0 0 nc|ENSG00000138668|Q14103-3|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENST00000514325.1_1_4:83277919-83278597:-|nuORF nc|ENSG00000138668|Q14103-3|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 359.210849 1074.61072 -0.31405 -0.00011281 0.13115 4.711E-05 -0.1829 -6.5699E-05 359.21091892304753 17.462 0.34745 17.462 17.277 17.625 0 -0.022618 3.3032E-05 NaN 3.0723 21 9 4 NaN NaN NaN NaN 0 NaN NaN 0 1154700 49523 4197 32963 32984 0.07639529293783198 VGLSKCEIKV 10 Unmodified _VGLSKCEIKV_ 0 0 0 nc|ENSG00000138668|Q14103-3|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENST00000514325.1_1_4:83277919-83278597:-|nuORF nc|ENSG00000138668|Q14103-3|HNRNPD nc|ENSG00000138668|Q14103-3|HNRNPD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 359.210849 1074.61072 -0.35225 -0.00012653 0.29249 0.00010507 -0.059761 -2.1467E-05 359.2109368341455 18.769 0.3559 17.444 17.257 17.613 -1.3251 -0.040332 0.0002069 NaN 3.0723 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 560130 49524 4197 32963 32984 0.07639529293783198 VGLSPRGDRL 10 Unmodified _VGLSPRGDRL_ 0 0 0 REV__ENST00000467659.1_1_22:19026380-19028919:-|nuORF REV__ENST00000467659.1_1_22:19026380-19028919:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.2093811035156 3 357.208607 1068.60399 NaN NaN NaN NaN NaN NaN NaN 131.55 1 126.75 126.25 127.25 -4.799 0 0 0 0.22588 1 25326 25326 1.9064 0.57673 1 + 49525 21983 32964 32985 48578 48578 0.07243352457408037 VGLSPSDPPGR 11 Unmodified _VGLSPSDPPGR_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2786865234375 2 541.285463 1080.55637 -1.1339 -0.00061376 1.2506 0.00067694 0.11672 6.3181E-05 541.2861204168071 18.074 0.48702 16.559 16.327 16.814 -1.5148 29 13 3 0 0 0 0.66106 1 2629 2629 0.00056442 0 1 4890000 + 49526 17178;24395 32965 32986 48579 48579 0.019316534665676954 VGLSRLPDPK 10 Unmodified _VGLSRLPDPK_ 0 0 0 REV__ENST00000530591.5_1_11:126225904-126276042:+|nuORF REV__ENST00000530591.5_1_11:126225904-126276042:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2843017578125 2 541.321848 1080.62914 NaN NaN NaN NaN NaN NaN NaN 12.344 1 11.215 10.715 11.715 -1.1293 0 0 0 0.22588 1 1506 1506 1.4819 0.15237 1 + 49527 22755 32966 32987 48580 48580 0.09205407259969434 VGLSRLQCGH 10 Unmodified _VGLSRLQCGH_ 0 0 0 ENSG00000188011|ENST00000343216|RTP5 ENSG00000188011|ENST00000343216|RTP5 ENSG00000188011|ENST00000343216|RTP5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.19085693359375 3 357.190559 1068.54985 NaN NaN NaN NaN NaN NaN NaN 117.26 1 112.78 112.28 113.28 -4.486 0 0 0 0.22588 1 23116 23116 1.9064 0 1 49528 7141 32967 32988 48581 48581 0.018314370342068287 VGLSSLGS 8 Unmodified _VGLSSLGS_ 0 0 0 nc|ENSG00000288675|I0J062|PANO1 nc|ENSG00000288675|I0J062|PANO1 nc|ENSG00000288675|I0J062|PANO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 120.71 1 120.71 120.21 121.21 0 0 0 0 0.21486 1 23792 23792 2.5775 0 1 49529 12656 32968 32989 48582 48582 0.01566162534970772 VGLSSLGS 8 Unmodified _VGLSSLGS_ 0 0 0 nc|ENSG00000288675|I0J062|PANO1 nc|ENSG00000288675|I0J062|PANO1 nc|ENSG00000288675|I0J062|PANO1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015686035156 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 99.377 1 95.244 94.744 95.744 -4.1326 0 0 0 0.21486 1 19521 19521 2.5775 0 1 49530 12656 32968 32989 48583 48583 0.01566162534970772 VGLSSLGS 8 Unmodified _VGLSSLGS_ 0 0 0 nc|ENSG00000288675|I0J062|PANO1 nc|ENSG00000288675|I0J062|PANO1 nc|ENSG00000288675|I0J062|PANO1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015075683594 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 129.67 1 125.04 124.54 125.54 -4.6292 0 0 0 0.21486 1 25553 25553 2.5775 0 1 49531 12656 32968 32989 48584 48584 0.01566162534970772 VGLTEAWVS 9 Unmodified _VGLTEAWVS_ 0 0 0 ENST00000466096.5_1_9:139726444-139730415:+|nuORF ENST00000466096.5_1_9:139726444-139730415:+|nuORF ENST00000466096.5_1_9:139726444-139730415:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7814025878906 2 481.2531 960.491647 -0.046056 -2.2165E-05 0.089283 4.2968E-05 0.043227 2.0803E-05 481.2529712881447 19.05 0.76262 19.05 18.652 19.415 0 38 21 3 0 0 0 0.28246 1 3085 3085 1.6919 0 1 5695900 49532 10131 32969 32990 48585 48585 0.00982078660570096 VGLTGTAT 8 Unmodified _VGLTGTAT_ 0 0 0 nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13 nc|ENSG00000140945|P55290-5|CDH13 nc|ENSG00000140945|P55290-5|CDH13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 70.638 1 70.638 70.138 71.138 0 0 0 0 0.21486 1 13680 13680 9.3474 0 1 49533 4334 32970 32991 48586 48586 0.015661625349594033 VGLTGTAT 8 Unmodified _VGLTGTAT_ 0 0 0 nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13 nc|ENSG00000140945|P55290-5|CDH13 nc|ENSG00000140945|P55290-5|CDH13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017822265625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 71.086 1 71.086 70.586 71.586 0 0 0 0 0.21486 1 13768 13768 5.2307 0 1 49534 4334 32970 32991 48587 48587 0.015661625349594033 VGLTGTAT 8 Unmodified _VGLTGTAT_ 0 0 0 nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13 nc|ENSG00000140945|P55290-5|CDH13 nc|ENSG00000140945|P55290-5|CDH13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013854980469 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 74.239 1 70.875 70.375 71.375 -3.3643 0 0 0 0.21486 1 14482 14482 5.2307 0 1 49535 4334 32970 32991 48588 48588 0.015661625349594033 VGLTLHRY 8 Unmodified _VGLTLHRY_ 0 0 0 REV__ENST00000339438.10_1_1:115259665-115259875:-|nuORF REV__ENST00000339438.10_1_1:115259665-115259875:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.2062683105469 3 320.187143 957.5396 NaN NaN NaN NaN NaN NaN NaN 87.67 1 83.919 83.419 84.419 -3.7501 0 0 0 0.21486 1 16775 16775 1.8442 0 1 + 49536 20692 32971 32992 48589 48589 0.05913197371273782 VGLTVKKSVL 10 Unmodified _VGLTVKKSVL_ 0 0 0 REV__RNF182|p.C232Afs*9|1|0.04|ENSG00000180537|chr6:13977809-13977809|T/-|frameshift_variant REV__RNF182|p.C232Afs*9|1|0.04|ENSG00000180537|chr6:13977809-13977809|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.263427734375 2 522.344792 1042.67503 NaN NaN NaN NaN NaN NaN NaN 118.85 1 118.85 118.35 119.35 0 0 0 0 2.8426 1 23410 23410 0.043787 0 1 + 49537 18694 32972 32993 48590 48590 0.15540052442224805 VGLVEKVLG 9 Unmodified _VGLVEKVLG_ 0 0 0 LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.0638732910156 3 305.195416 912.564418 NaN NaN NaN NaN NaN NaN NaN 21.508 1 19.787 19.287 20.287 -1.7211 0 0 0 0.23508 1 3366 3366 0.26902 0 1 49538 12082 32973 32994 48591 48591 0.104638324540133 VGLVGTAF 8 Unmodified _VGLVGTAF_ 0 0 0 REV__ENSG00000127530|ENST00000641666|OR7C1 REV__ENSG00000127530|ENST00000641666|OR7C1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.8775329589844 2 382.221072 762.42759 NaN NaN NaN NaN NaN NaN NaN 94.924 1 90.733 90.233 91.233 -4.1911 0 0 0 0.21486 1 18115 18115 6.3541 0 1 + 49539 15891 32974 32995 48592 48592 0.03687343294279799 VGLVKFVIG 9 Unmodified _VGLVKFVIG_ 0 0 0 REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1 REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2118835449219 3 311.204023 930.590239 NaN NaN NaN NaN NaN NaN NaN 37.446 1 37.446 36.946 37.946 0 0 0 0 0.23508 1 6923 6923 0.26902 0 1 + 49540 25298 32975 32996 48593 48593 0.122167266962947 VGLVLIVLLLV 11 Unmodified _VGLVLIVLLLV_ 0 0 0 REV__ENSG00000074181|ENST00000263388|NOTCH3 REV__ENSG00000074181|ENST00000263388|NOTCH3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3261108398438 2 575.91231 1149.81007 NaN NaN NaN NaN NaN NaN NaN 109.27 1 104.81 104.31 105.31 -4.4518 0 0 0 0.22632 1 20971 20971 0 0 1 + 49541 14311 32976 32997 48594 48594 0.24115532583982713 VGLVLVLLRGL 11 Unmodified _VGLVLVLLRGL_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2;N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant;N4BP2|p.S1460Ifs*17|1|0.33|ENSG00000078177|chr4:40126175-40126176|-/A|frameshift_variant;N4BP2|p.E619Kfs*9|1|0.27|ENSG00000078177|chr4:40119961-40119961|A/-|frameshift_variant nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3196411132812 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 105.73 1 105.73 105.23 106.23 0 0 0 0 0.22632 1 20781 20781 0 0 1 49542 1572 32977 32998 48595 48595 0.21080593638657774 VGLVLVLLRGL 11 Unmodified _VGLVLVLLRGL_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2;N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant;N4BP2|p.S1460Ifs*17|1|0.33|ENSG00000078177|chr4:40126175-40126176|-/A|frameshift_variant;N4BP2|p.E619Kfs*9|1|0.27|ENSG00000078177|chr4:40119961-40119961|A/-|frameshift_variant nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3179931640625 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 149.02 1 144.31 143.81 144.81 -4.7095 0 0 0 0.22632 1 29594 29594 0 0 1 49543 1572 32977 32998 48596 48596 0.21080593638657774 VGLVLVLLRGL 11 Unmodified _VGLVLVLLRGL_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2;N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant;N4BP2|p.S1460Ifs*17|1|0.33|ENSG00000078177|chr4:40126175-40126176|-/A|frameshift_variant;N4BP2|p.E619Kfs*9|1|0.27|ENSG00000078177|chr4:40119961-40119961|A/-|frameshift_variant nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3336181640625 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 149.19 1 144.47 143.97 144.97 -4.7245 0 0 0 0.22632 1 29629 29629 0 0 1 49544 1572 32977 32998 48597 48597 0.21080593638657774 VGLVLVLLRGL 11 Unmodified _VGLVLVLLRGL_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2;N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant;N4BP2|p.S1460Ifs*17|1|0.33|ENSG00000078177|chr4:40126175-40126176|-/A|frameshift_variant;N4BP2|p.E619Kfs*9|1|0.27|ENSG00000078177|chr4:40119961-40119961|A/-|frameshift_variant nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3218383789062 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 128.25 1 123.43 122.93 123.93 -4.817 0 0 0 0.22632 1 24622 24622 0 0 1 49545 1572 32977 32998 48598 48598 0.21080593638657774 VGLVLVLLRGL 11 Unmodified _VGLVLVLLRGL_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2;N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant;N4BP2|p.S1460Ifs*17|1|0.33|ENSG00000078177|chr4:40126175-40126176|-/A|frameshift_variant;N4BP2|p.E619Kfs*9|1|0.27|ENSG00000078177|chr4:40119961-40119961|A/-|frameshift_variant nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.333251953125 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 128.29 1 123.48 122.98 123.98 -4.817 0 0 0 0.22632 1 24630 24630 0 0 1 49546 1572 32977 32998 48599 48599 0.21080593638657774 VGLVLVLLRGL 11 Unmodified _VGLVLVLLRGL_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2;N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant;N4BP2|p.S1460Ifs*17|1|0.33|ENSG00000078177|chr4:40126175-40126176|-/A|frameshift_variant;N4BP2|p.E619Kfs*9|1|0.27|ENSG00000078177|chr4:40119961-40119961|A/-|frameshift_variant nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3168334960938 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 136.12 1 131.29 130.79 131.79 -4.8307 0 0 0 0.22632 1 26209 26209 0 0 1 49547 1572 32977 32998 48600 48600 0.21080593638657774 VGLVLVLLRGL 11 Unmodified _VGLVLVLLRGL_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2;N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant;N4BP2|p.S1460Ifs*17|1|0.33|ENSG00000078177|chr4:40126175-40126176|-/A|frameshift_variant;N4BP2|p.E619Kfs*9|1|0.27|ENSG00000078177|chr4:40119961-40119961|A/-|frameshift_variant nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3211059570312 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 149.43 1 144.31 143.81 144.81 -5.1204 0 0 0 0.22632 1 28955 28955 0 0 1 49548 1572 32977 32998 48601 48601 0.21080593638657774 VGLVPLKALL 10 Unmodified _VGLVPLKALL_ 0 0 0 nc|ENSG00000160282|O95954-3|FTCD;ENSG00000160282|ENST00000397746|FTCD;nc|ENSG00000160282|O95954-2|FTCD nc|ENSG00000160282|O95954-3|FTCD nc|ENSG00000160282|O95954-3|FTCD MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 511.8050842285156 2 511.852253 1021.68995 NaN NaN NaN NaN NaN NaN NaN 124.73 1 124.73 124.23 125.23 0 0 0 0 2.8426 1 24598 24598 0 0 1 49549 5243 32978 32999 48602 48602 0.1799754431023075 VGLVRAILCFL 11 Unmodified _VGLVRAILCFL_ 0 0 0 REV__nc|ENSG00000090020|P19634-2|SLC9A1 REV__nc|ENSG00000090020|P19634-2|SLC9A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2886962890625 2 602.367744 1202.72094 NaN NaN NaN NaN NaN NaN NaN 68.43 1 64.893 64.393 65.393 -3.5362 0 0 0 0.23199 1 12859 12859 6.7232 1.8262 1 + 49550 14542 32979 33000 48603 48603 0.1276837435282232 VGLVRSGIK 9 Unmodified _VGLVRSGIK_ 0 0 0 REV__ENSG00000133597|ENST00000072869|ADCK2 REV__ENSG00000133597|ENST00000072869|ADCK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1699523925781 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 23.858 1 23.858 23.358 24.358 0 0 0 0 0.23508 1 4087 4087 0.96228 0.50394 1 + 49551 16169 32980 33001 48604 48604 0.1198605692242154 VGLVSSTG 8 Unmodified _VGLVSSTG_ 0 0 0 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2010803222656 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 150.29 1 150.29 149.79 150.79 0 0 0 0 0.21486 1 30090 30090 2.5775 0 1 49552 7284 32981 33002 48605 48605 0.01566162534970772 VGLVSSTG 8 Unmodified _VGLVSSTG_ 0 0 0 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017517089844 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 92.574 1 88.649 88.149 89.149 -3.9251 0 0 0 0.21486 1 18132 18132 5.7604 0 1 49553 7284 32981 33002 48606 48606 0.01566162534970772 VGLVSSTG 8 Unmodified _VGLVSSTG_ 0 0 0 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20159912109375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 93.009 1 89.018 88.518 89.518 -3.9907 0 0 0 0.21486 1 18221 18221 5.7604 0 1 49554 7284 32981 33002 48607 48607 0.01566162534970772 VGLVSSTG 8 Unmodified _VGLVSSTG_ 0 0 0 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013854980469 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 95.061 1 91.012 90.512 91.512 -4.0496 0 0 0 0.21486 1 18630 18630 5.7604 0 1 49555 7284 32981 33002 48608 48608 0.01566162534970772 VGLVSSTG 8 Unmodified _VGLVSSTG_ 0 0 0 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201904296875 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 95.879 1 91.83 91.33 92.33 -4.0496 0 0 0 0.21486 1 18796 18796 5.7604 0 1 49556 7284 32981 33002 48609 48609 0.01566162534970772 VGLVSSTG 8 Unmodified _VGLVSSTG_ 0 0 0 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20184326171875 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 96.141 1 92.092 91.592 92.592 -4.0496 0 0 0 0.21486 1 18847 18847 5.7604 0 1 49557 7284 32981 33002 48610 48610 0.01566162534970772 VGLVSSTG 8 Unmodified _VGLVSSTG_ 0 0 0 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2020568847656 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 95.054 1 90.862 90.362 91.362 -4.1911 0 0 0 0.21486 1 18140 18140 5.7604 0 1 49558 7284 32981 33002 48611 48611 0.01566162534970772 VGLVSSTG 8 Unmodified _VGLVSSTG_ 0 0 0 PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017822265625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 96.638 1 92.719 92.219 93.219 -3.9194 0 0 0 0.21486 1 18543 18543 5.7604 0 1 49559 7284 32981 33002 48612 48612 0.01566162534970772 VGLVVLLPVL 10 Unmodified _VGLVVLLPVL_ 0 0 0 REV__ATP8B1|p.N205Kfs*2|1|0.26|ENSG00000081923|chr18:57697807-57697808|-/T|frameshift_variant REV__ATP8B1|p.N205Kfs*2|1|0.26|ENSG00000081923|chr18:57697807-57697808|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 510.78045654296875 2 511.354628 1020.6947 -0.35975 -0.00018396 3.4839 0.0017815 3.1241 0.0015975 511.8586108981323 144.48 0.14041 139.41 139.35 139.49 -5.0671 5 3 2 0 0 0 1.133 1 27879 27879 0 0 1 1644100 + 49560 13156 32982 33003 48613 48613 0.1851842845298961 VGLWGKGVV 9 Unmodified _VGLWGKGVV_ 0 0 0 ENST00000606645.1_1_1:2478503-2478548:+|nuORF ENST00000606645.1_1_1:2478503-2478548:+|nuORF ENST00000606645.1_1_1:2478503-2478548:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2385559082031 2 457.776545 913.538538 NaN NaN NaN NaN NaN NaN NaN 83.045 1 83.045 82.545 83.545 0 0 0 0 0.23508 1 16189 16189 11.64 0.81637 1 49561 11748 32983 33004 48614 48614 0.07830983002384073 VGLWRKRKFA 10 Unmodified _VGLWRKRKFA_ 0 0 0 ENST00000455089.5_1_7:55087016-55210125:+|nuORF ENST00000455089.5_1_7:55087016-55210125:+|nuORF ENST00000455089.5_1_7:55087016-55210125:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7702026367188 2 630.888024 1259.7615 NaN NaN NaN NaN NaN NaN NaN 58.591 1 55.339 54.839 55.839 -3.2517 0 0 0 2.8426 1 10890 10890 0 0 1 49562 10018 32984 33005 48615 48615 0.14200476787459593 VGLWTLYL 8 Unmodified _VGLWTLYL_ 0 0 0 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.8678894042969 3 322.188261 963.542954 -0.47826 -0.00015409 -0.93382 -0.00030087 -1.4121 -0.00045495 322.1879393257792 21.364 0.3349 21.364 21.231 21.566 0 20 9 3 0 0 0 1.0276 1 3591 3591 1.8442 0.6509 1 475600 49563 4219 32985 33006 48616 48616 0.059724474252675464 VGLWTLYL 8 Unmodified _VGLWTLYL_ 0 0 0 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 322.188261 963.542954 0.41597 0.00013402 -1.71 -0.00055093 -1.294 -0.0004169 322.187675313448 22.682 0.34626 21.129 20.991 21.338 -1.5532 -0.11761 -0.00039428 NaN 1.8442 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 456690 49564 4219 32985 33006 0.059724474252675464 VGLYCDKKLI 10 Unmodified _VGLYCDKKLI_ 0 0 0 ENSG00000135900|ENST00000258383|MRPL44 ENSG00000135900|ENST00000258383|MRPL44 ENSG00000135900|ENST00000258383|MRPL44 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3258056640625 2 576.328285 1150.64202 NaN NaN NaN NaN NaN NaN NaN 162.53 1 157.74 157.24 158.24 -4.7898 0 0 0 2.8426 1 32345 32345 0.043787 0 1 49565 3961 32986 33007 48617 48617 0.07272102327874563 VGLYLILKF 9 Unmodified _VGLYLILKF_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2789306640625 2 533.338978 1064.6634 NaN NaN NaN NaN NaN NaN NaN 164.14 1 164.14 163.64 164.64 0 0 0 0 0.19624 1 33156 33156 0 0 1 49566 7651 32987 33008 48618 48618 0.133658554188969 VGLYLILKF 9 Unmodified _VGLYLILKF_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2760620117188 2 533.338978 1064.6634 NaN NaN NaN NaN NaN NaN NaN 140.18 1 135.33 134.83 135.83 -4.8492 0 0 0 0.19624 1 27030 27030 0 0 1 49567 7651 32987 33008 48619 48619 0.133658554188969 VGLYLILKF 9 Unmodified _VGLYLILKF_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2672729492188 2 533.338978 1064.6634 NaN NaN NaN NaN NaN NaN NaN 152.65 1 147.46 146.96 147.96 -5.1875 0 0 0 0.19624 1 29585 29585 0 0 1 49568 7651 32987 33008 48620 48620 0.133658554188969 VGMAFCGH 8 Unmodified _VGMAFCGH_ 0 0 0 REV__ENST00000494295.1_1_X:134477369-134477459:-|nuORF REV__ENST00000494295.1_1_X:134477369-134477459:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 411.1752014160156 2 411.175284 820.336015 NaN NaN NaN NaN NaN NaN NaN 47.311 1 47.311 46.811 47.811 0 0 0 0 0.21486 1 8920 8920 2.8892 0 1 + 49569 22362 32988 33009 48621 48621 -0.08133986666200599 VGMAFIRI 8 Unmodified _VGMAFIRI_ 0 0 0 REV__COL22A1|p.V175M|1|0.39|ENSG00000169436|chr8:138877885-138877885|C/T|missense_variant REV__COL22A1|p.V175M|1|0.39|ENSG00000169436|chr8:138877885-138877885|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7644958496094 2 453.765123 905.515694 NaN NaN NaN NaN NaN NaN NaN 12.398 1 11.277 10.777 11.777 -1.1206 0 0 0 0.21486 1 1470 1470 0.79363 0 1 + 49570 13482 32989 33010 48622 48622 0.05915640613238793 VGMGNARG 8 Unmodified _VGMGNARG_ 0 0 0 REV__ENSG00000107371|ENST00000327304|EXOSC3 REV__ENSG00000107371|ENST00000327304|EXOSC3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2130126953125 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 46.972 1 46.972 46.472 47.472 0 0 0 0 0.23749 1 8851 8851 0.13829 0.015425 1 + 49571 15081 32990 33011 48623 48623 -0.024761260455534284 VGMHGLLV 8 Unmodified _VGMHGLLV_ 0 0 0 REV__ENST00000588283.1_2_17:73910154-73910367:-|nuORF REV__ENST00000588283.1_2_17:73910154-73910367:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 413.17913818359375 2 413.236199 824.457844 NaN NaN NaN NaN NaN NaN NaN 17.918 1 17.918 17.418 18.418 0 0 0 0 0.2396 1 2857 2857 0 0 1 + 49572 23291 32991 33012 48624 48624 0.03859378687809567 VGMHSTPEV 9 Unmodified _VGMHSTPEV_ 0 0 0 REV__ENSG00000103740|ENST00000258873|ACSBG1 REV__ENSG00000103740|ENST00000258873|ACSBG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72479248046875 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 48.98 1 45.981 45.481 46.481 -2.999 0 0 0 0.23508 1 8949 8949 12.532 3.1841 1 + 49573 14898 32992 33013 48625 48625 -0.03618738250975184 VGMMKMYE 8 Unmodified _VGMMKMYE_ 0 0 0 REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant REV__ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 330.00811767578125 3 330.148203 987.422781 0.14896 4.9178E-05 -0.27041 -8.9276E-05 -0.12146 -4.0099E-05 330.14804047921496 153.02 0.6252 147.75 147.4 148.02 -5.2669 26 17 2 0 0 0 1.0265 1 29612 29612 1.6526 0 1 1571200 + 49574 12882 32993 33014 48626 48626 -0.07143368226650182 VGMMSNFFYY 10 Unmodified _VGMMSNFFYY_ 0 0 0 REV__ENST00000482825.7_1_1:150936938-150939392:-|nuORF REV__ENST00000482825.7_1_1:150936938-150939392:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7698974609375 2 629.767203 1257.51985 1.0997 0.00069258 0.93752 0.00059042 2.0373 0.001283 629.7679167766325 124.73 0.90865 120.13 119.74 120.65 -4.5984 57 25 3 0 0 0 0.47483 1 24559 24559 0.26539 0.23398 1 4408300 + 49575 16725 32994 33015 48627 48627 -0.09860682745988925 VGMNMGHQ 8 Unmodified _VGMNMGHQ_ 0 0 0 REV__KAT6A|p.R1895H|1|0.45|ENSG00000083168|chr8:41932536-41932536|C/T|missense_variant REV__KAT6A|p.R1895H|1|0.45|ENSG00000083168|chr8:41932536-41932536|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2299499511719 2 437.188923 872.363292 NaN NaN NaN NaN NaN NaN NaN 44.699 1 41.951 41.451 42.451 -2.7475 0 0 0 0.23711 1 8095 8095 0.30703 0.29875 1 + 49576 23697 32995 33016 48628 48628 -0.0779950312580695 VGMPFHIH 8 Unmodified _VGMPFHIH_ 0 0 0 MCHR2|p.L89H|1|0.06|ENSG00000152034|chr6:99947888-99947888|A/T|missense_variant MCHR2|p.L89H|1|0.06|ENSG00000152034|chr6:99947888-99947888|A/T|missense_variant MCHR2|p.L89H|1|0.06|ENSG00000152034|chr6:99947888-99947888|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.1589050292969 3 313.161941 936.463992 NaN NaN NaN NaN NaN NaN NaN 107.1 1 102.69 102.19 103.19 -4.4121 0 0 0 0.21486 1 20546 20546 0.45834 0 1 49577 12117 32996 33017 48629 48629 -0.006781030806564559 VGMPSHCHL 9 Unmodified _VGMPSHCHL_ 0 0 0 REV__ENST00000343090.10_1_1:10166290-10166518:+|nuORF REV__ENST00000343090.10_1_1:10166290-10166518:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2586364746094 2 490.725672 979.436791 NaN NaN NaN NaN NaN NaN NaN 127.81 1 123.02 122.52 123.52 -4.7958 0 0 0 0.19656 1 24532 24532 0.12781 0.0049496 1 + 49578 20732 32997 33018 48630 48630 -0.053749546833387285 VGMRDYTLQ 9 Unmodified _VGMRDYTLQ_ 0 0 0 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.5248107910156 3 361.51482 1081.52263 NaN NaN NaN NaN NaN NaN NaN 29.431 1 27.475 26.975 27.975 -1.9561 0 0 0 0.19684 1 5291 5291 0.0033805 0 1 49579 26100 32998 33019 48631 48631 -0.014870912968262928 VGMRLSRAGP 10 Unmodified _VGMRLSRAGP_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2628173828125 2 522.292568 1042.57058 NaN NaN NaN NaN NaN NaN NaN 136.49 1 131.6 131.1 132.1 -4.8951 0 0 0 0.22588 1 26231 26231 8.1555 0.24537 1 49580 1696 32999 33020 48632 48632 0.05100027413891439 VGMRRTRPY 9 Unmodified _VGMRRTRPY_ 0 0 0 REV__ENST00000264010.8_1_16:67605120-67644919:+|nuORF REV__ENST00000264010.8_1_16:67605120-67644919:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 379.2225646972656 3 379.209953 1134.60803 NaN NaN NaN NaN NaN NaN NaN 103.48 1 99.423 98.923 99.923 -4.0543 0 0 0 0.23508 1 19897 19897 1.1933 0.12188 1 + 49581 20223 33000 33021 48633 48633 0.04611118679486026 VGMSNGKG 8 Unmodified _VGMSNGKG_ 0 0 0 REV__ENST00000409314.5_1_11:72553721-72553784:-|nuORF REV__ENST00000409314.5_1_11:72553721-72553784:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2149963378906 2 375.184163 748.353773 NaN NaN NaN NaN NaN NaN NaN 92.151 1 92.151 91.651 92.651 0 0 0 0 0.2343 1 18015 18015 0.12286 0 1 + 49582 21407 33001 33022 48634 48634 -0.030469481396835363 VGMVANKG 8 Unmodified _VGMVANKG_ 0 0 0 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7196044921875 2 388.210181 774.405809 NaN NaN NaN NaN NaN NaN NaN 45.082 1 42.292 41.792 42.792 -2.79 0 0 0 0.23711 1 8485 8485 0.0082765 0 1 49583 26254 33002 33023 48635 48635 0.009582152740676975 VGNFNRNE 8 Unmodified _VGNFNRNE_ 0 0 0 ENSG00000136492|ENST00000259008|BRIP1;nc|ENSG00000136492|Q9BX63-2|BRIP1;BRIP1|p.I504Nfs*7|1|0.53|ENSG00000136492|chr17:61784387-61784388|-/T|frameshift_variant ENSG00000136492|ENST00000259008|BRIP1 ENSG00000136492|ENST00000259008|BRIP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1603698730469 3 317.154391 948.441343 NaN NaN NaN NaN NaN NaN NaN 22.205 1 20.751 20.251 21.251 -1.4535 0 0 0 0.21486 1 3531 3531 1.6526 0.45928 1 49584 4015 33003 33024 48636 48636 -0.034940309445801176 VGNGLVLWFF 10 Unmodified _VGNGLVLWFF_ 0 0 0 ENSG00000172935|ENST00000309099|MRGPRF ENSG00000172935|ENST00000309099|MRGPRF ENSG00000172935|ENST00000309099|MRGPRF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3165893554688 2 576.316035 1150.61752 NaN NaN NaN NaN NaN NaN NaN 158.63 1 153.36 152.86 153.86 -5.2748 0 0 0 2.8426 1 30788 30788 0.043787 0 1 49585 6254 33004 33025 48637 48637 0.04823210236668274 VGNHIKEL 8 Unmodified _VGNHIKEL_ 0 0 0 REV__ZNF300|p.K379Nfs*18|1|0.37|ENSG00000145908|chr5:150896102-150896102|T/-|frameshift_variant REV__ZNF300|p.K379Nfs*18|1|0.37|ENSG00000145908|chr5:150896102-150896102|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.0212707519531 3 303.843265 908.507966 -0.46076 -0.00014 -1.1724 -0.00035622 -1.6331 -0.00049622 303.84346665366735 30.947 0.38952 30.947 30.825 31.215 0 14 10 2 0 0 0 1.0281 1 5562 5562 0.45834 0 1 476060 + 49586 16860 33005 33026 48638 48638 0.050052046173163944 VGNHLSGEH 9 Unmodified _VGNHLSGEH_ 0 0 0 nc|ENSG00000149571|Q8IZU9-2|KIRREL3;KIRREL3|p.N575Mfs*27|1|0.29|ENSG00000149571|chr11:126429261-126429261|T/-|frameshift_variant;ENSG00000149571|ENST00000525144|KIRREL3;KIRREL3|p.I421Sfs*63|1|0.2|ENSG00000149571|chr11:126440542-126440542|G/-|frameshift_variant nc|ENSG00000149571|Q8IZU9-2|KIRREL3 nc|ENSG00000149571|Q8IZU9-2|KIRREL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.17474365234375 3 317.154391 948.441343 NaN NaN NaN NaN NaN NaN NaN 22.06 1 20.606 20.106 21.106 -1.4535 0 0 0 0.23508 1 3499 3499 1.1933 0 1 49587 4801 33006 33027 48639 48639 -0.03494030944568749 VGNKEEAAV 9 Unmodified _VGNKEEAAV_ 0 0 0 REV__ENSG00000111817|ENST00000644252|DSE REV__ENSG00000111817|ENST00000644252|DSE MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2239685058594 2 458.740357 915.46616 0.35276 0.00016183 -2.1641 -0.00099278 -1.8114 -0.00083095 458.7402996548136 38.586 0.8854 38.586 38.072 38.957 0 71 24 4 0 0 0 0.13686 1 7117 7117 61.357 13.012 1 4795700 + 49588 15265 33007 33028 48640 48640 0.00504604138131981 VGNKFIKR 8 Unmodified _VGNKFIKR_ 0 0 0 REV__ENST00000539065.5_1_2:160569007-160585541:+|nuORF REV__ENST00000539065.5_1_2:160569007-160585541:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2397155761719 2 481.300719 960.586885 NaN NaN NaN NaN NaN NaN NaN 12.516 1 11.387 10.887 11.887 -1.1293 0 0 0 0.21486 1 1538 1538 0.79363 0 1 + 49589 22845 33008 33029 48641 48641 0.10501476642264151 VGNKFIKR 8 Unmodified _VGNKFIKR_ 0 0 0 REV__ENST00000539065.5_1_2:160569007-160585541:+|nuORF REV__ENST00000539065.5_1_2:160569007-160585541:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2314147949219 2 481.300719 960.586885 NaN NaN NaN NaN NaN NaN NaN 12.55 1 11.421 10.921 11.921 -1.1293 0 0 0 0.21486 1 1546 1546 0.79363 0 1 + 49590 22845 33008 33029 48642 48642 0.10501476642264151 VGNKLLDD 8 Unmodified _VGNKLLDD_ 0 0 0 REV__nc|ENSG00000249948|Q9H227|GBA3 REV__nc|ENSG00000249948|Q9H227|GBA3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2286071777344 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 22.84 1 21.286 20.786 21.786 -1.5532 0 0 0 0.23749 1 3919 3919 0.0082765 0 1 + 49591 24293 33009 33030 48643 48643 0.019015056264720442 VGNPIRPP 8 Unmodified _VGNPIRPP_ 0 0 0 REV__CON__Q28085 REV__CON__Q28085 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2505187988281 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 159.93 1 154.68 154.18 155.18 -5.2526 0 0 0 0.23749 1 31034 31034 0.12286 0 1 + + 49592 13534 33010 33031 48644 48644 0.05653239308469438 VGNQINILLNY 11 Unmodified _VGNQINILLNY_ 0 0 0 nc|ENSG00000137634|Q6UWF7-2|NXPE4;ENSG00000137634|ENST00000375478|NXPE4 nc|ENSG00000137634|Q6UWF7-2|NXPE4 nc|ENSG00000137634|Q6UWF7-2|NXPE4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7546997070312 2 630.85097 1259.68739 NaN NaN NaN NaN NaN NaN NaN 45.021 1 42.156 41.656 42.656 -2.8653 0 0 0 0.23634 1 8166 8166 3.2813 0.28607 1 49593 4097 33011 33032 48645 48645 0.06793044114624536 VGNRANGSVVA 11 Unmodified _VGNRANGSVVA_ 0 0 0 REV__NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant REV__NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.26708984375 2 522.283254 1042.55196 -1.1043 -0.00057678 1.454 0.00075942 0.34969 0.00018264 522.2836877577727 18.45 0.34965 16.935 16.814 17.164 -1.5148 14 8 2 0 0 0 0.53231 1 2739 2739 21.537 1.1224 1 273520 + 49594 16039 33012 33033 48646 48646 0.032381890436681715 VGNRDRAR 8 Unmodified _VGNRDRAR_ 0 0 0 ENST00000494263.5_1_2:219646539-219646824:+|nuORF ENST00000494263.5_1_2:219646539-219646824:+|nuORF ENST00000494263.5_1_2:219646539-219646824:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.17767333984375 3 315.17753 942.51076 NaN NaN NaN NaN NaN NaN NaN 23.603 1 22.05 21.55 22.55 -1.5532 0 0 0 0.21486 1 4080 4080 0.45834 0 1 49595 10555 33013 33034 48647 48647 0.03720472794839225 VGNRGGCG 8 Unmodified _VGNRGGCG_ 0 0 0 REV__ENST00000332211.10_2_10:76970544-76970655:+|nuORF REV__ENST00000332211.10_2_10:76970544-76970655:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2133483886719 2 360.166305 718.318056 NaN NaN NaN NaN NaN NaN NaN 47.79 1 47.79 47.29 48.29 0 0 0 0 0.2396 1 9016 9016 0 0 1 + 49596 20622 33014 33035 48648 48648 -0.05236985596695831 VGNRKKQFQL 10 Unmodified _VGNRKKQFQL_ 0 0 0 ENST00000249330.2_1_7:100805946-100806276:-|nuORF ENST00000249330.2_1_7:100805946-100806276:-|nuORF ENST00000249330.2_1_7:100805946-100806276:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.0130310058594 4 305.183286 1216.70404 -0.47742 -0.0001457 0.19166 5.849E-05 -0.28577 -8.7211E-05 305.4340887553882 32.954 0.7673 32.954 32.467 33.234 0 29 21 2 0 0 0 0.91149 1 5929 5929 0.15932 0 1 994490 49597 8217 33015 33036 48649 48649 0.1043558979122281 VGNRKKQFQL 10 Unmodified _VGNRKKQFQL_ 0 0 0 ENST00000249330.2_1_7:100805946-100806276:-|nuORF ENST00000249330.2_1_7:100805946-100806276:-|nuORF ENST00000249330.2_1_7:100805946-100806276:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 305.183286 1216.70404 0.16316 4.9793E-05 -0.91198 -0.00027832 -0.74883 -0.00022853 305.43393724827223 35.395 0.42071 33.143 32.846 33.266 -2.2527 0.09426 -0.0010279 NaN 0.15932 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 478490 49598 8217 33015 33036 0.1043558979122281 VGNRLWWMYS 10 Unmodified _VGNRLWWMYS_ 0 0 0 REV__ENST00000401050.7_1_1:53099138-53105680:+|nuORF REV__ENST00000401050.7_1_1:53099138-53105680:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.88226318359375 3 437.881614 1310.62301 NaN NaN NaN NaN NaN NaN NaN 8.0861 1 8.0861 7.5861 8.5861 0 0 0 0 0.22588 1 807 807 0.15932 0 1 + 49599 21356 33016 33037 48650 48650 -0.019874342431876357 VGNSAQKEVY 10 Unmodified _VGNSAQKEVY_ 0 0 0 REV__ENSG00000166825|ENST00000300060|ANPEP REV__ENSG00000166825|ENST00000300060|ANPEP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.777099609375 2 547.77747 1093.54039 0.11181 6.1245E-05 0.51342 0.00028124 0.62523 0.00034249 547.7776428551562 76.362 0.57518 72.64 72.38 72.955 -3.7227 23 16 2 0 0 0 0.372 1 14472 14472 1.9275 0 1 1551400 + 49600 17877 33017 33038 48651 48651 -0.0026405277033063612 VGNSCATSIA 10 Unmodified _VGNSCATSIA_ 0 0 0 REV__ENSG00000166825|ENST00000300060|ANPEP REV__ENSG00000166825|ENST00000300060|ANPEP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.1539001464844 3 308.148137 921.422581 NaN NaN NaN NaN NaN NaN NaN 98.538 1 94.268 93.768 94.768 -4.2692 0 0 0 0.22588 1 18837 18837 1.9064 0 1 + 49601 17877 33018 33039 48652 48652 -0.04127328630647753 VGNSDCHYQE 10 Unmodified _VGNSDCHYQE_ 0 0 0 SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant;SYCP1|p.K118Nfs*4|1|0.14|ENSG00000198765|chr1:114858603-114858603|A/-|frameshift_variant;SYCP1|p.R882Efs*6|1|0.41|ENSG00000198765|chr1:114984799-114984800|-/A|frameshift_variant;SYCP1|p.K931Rfs*6|1|0.27|ENSG00000198765|chr1:114994781-114994781|A/-|frameshift_variant;ENSG00000198765|ENST00000369522|SYCP1 SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3236083984375 2 576.224745 1150.43494 0.27021 0.0001557 0.85898 0.00049497 1.1292 0.00065067 576.7255791806588 155.99 0.10765 150.71 150.65 150.76 -5.2854 4 2 2 0 0 0 0.5179 1 30253 30253 0.043787 0.040407 1 1670300 49602 25801 33019 33040 48653 48653 -0.13426336958264073 VGNSDCHYQE 10 Unmodified _VGNSDCHYQE_ 0 0 0 SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant;SYCP1|p.K118Nfs*4|1|0.14|ENSG00000198765|chr1:114858603-114858603|A/-|frameshift_variant;SYCP1|p.R882Efs*6|1|0.41|ENSG00000198765|chr1:114984799-114984800|-/A|frameshift_variant;SYCP1|p.K931Rfs*6|1|0.27|ENSG00000198765|chr1:114994781-114994781|A/-|frameshift_variant;ENSG00000198765|ENST00000369522|SYCP1 SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3223876953125 2 576.224745 1150.43494 NaN NaN NaN NaN NaN NaN NaN 124.92 1 120.16 119.66 120.66 -4.7681 0 0 0 0.22588 1 23989 23989 10.074 0 1 49603 25801 33019 33040 48654 48654 -0.13426336958264073 VGNSGKTY 8 Unmodified _VGNSGKTY_ 0 0 0 ENST00000256497.8_1_3:5261359-5261473:+|nuORF ENST00000256497.8_1_3:5261359-5261473:+|nuORF ENST00000256497.8_1_3:5261359-5261473:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 413.1805725097656 2 413.208692 824.402832 -0.25413 -0.00010501 0.49866 0.00020605 0.24453 0.00010104 413.2088793874448 48.319 0.56702 45.45 45.199 45.766 -2.869 22 15 2 0 0 0 0.73426 1 9194 9194 9.3474 3.587 1 1125200 49604 8258 33020 33041 48655 48655 -0.016393365791145698 VGNSGKTY 8 Unmodified _VGNSGKTY_ 0 0 0 ENST00000256497.8_1_3:5261359-5261473:+|nuORF ENST00000256497.8_1_3:5261359-5261473:+|nuORF ENST00000256497.8_1_3:5261359-5261473:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 413.208692 824.402832 0.35258 0.00014569 -0.39424 -0.0001629 -0.041651 -1.721E-05 413.2085850354128 45.621 0.41726 45.621 45.378 45.796 0 0.085253 -0.00040919 NaN 9.3474 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 789660 49605 8258 33020 33041 -0.016393365791145698 VGNSSWYLYDG 11 Unmodified _VGNSSWYLYDG_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1;ATP8B1|p.P792Hfs*8|1|0.34|ENSG00000081923|chr18:57662528-57662528|A/-|frameshift_variant;ATP8B1|p.I809Nfs*11|1|0.61|ENSG00000081923|chr18:57661455-57661456|-/T|frameshift_variant ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7774047851562 2 630.78021 1259.54587 NaN NaN NaN NaN NaN NaN NaN 179.1 1 174.19 173.69 174.69 -4.91 0 0 0 0.23698 1 35735 35735 1.3295 0.87119 1 49606 1631 33021 33042 48656 48656 -0.07352373978528703 VGNSTSGK 8 Unmodified _VGNSTSGK_ 0 0 0 ADAMTS10|p.P552Rfs*85|1|0.35|ENSG00000142303|chr19:8592038-8592038|C/-|frameshift_variant;nc|ENSG00000142303|Q9H324-2|ADAMTS10 ADAMTS10|p.P552Rfs*85|1|0.35|ENSG00000142303|chr19:8592038-8592038|C/-|frameshift_variant ADAMTS10|p.P552Rfs*85|1|0.35|ENSG00000142303|chr19:8592038-8592038|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21099853515625 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 69.016 1 65.626 65.126 66.126 -3.3903 0 0 0 0.2396 1 13041 13041 0.30703 0.30703 1 49607 60 33022 33043 48657 48657 -0.012719096131945662 VGNTINVKL 9 Unmodified _VGNTINVKL_ 0 0 0 REV__tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1 REV__tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7388610839844 2 479.290017 956.565481 0.17644 8.4565E-05 0.0013315 6.3815E-07 0.17777 8.5203E-05 479.29004473110575 124.51 0.66233 119.93 119.48 120.14 -4.5757 45 18 3 0 0 0 0.47976 1 24589 24589 1.6919 0 1 3709700 + 49608 25277 33023 33044 48658 48658 0.0854604682289164 VGNWPEFCC 9 Unmodified _VGNWPEFCC_ 0 0 0 REV__MAPKBP1|p.Q1492Rfs*33|1|0.4|ENSG00000137802|chr15:41825365-41825365|C/-|frameshift_variant REV__MAPKBP1|p.Q1492Rfs*33|1|0.4|ENSG00000137802|chr15:41825365-41825365|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.1628112792969 3 352.142217 1053.40482 NaN NaN NaN NaN NaN NaN NaN 27.905 1 27.905 27.405 28.405 0 0 0 0 0.19622 1 4939 4939 0.0033805 0 1 + 49609 23836 33024 33045 48659 48659 -0.1197436715715412 VGNYVRNI 8 Unmodified _VGNYVRNI_ 0 0 0 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1;SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant;nc|ENSG00000115904|Q07889-2|SOS1;SOS1|p.L339Tfs*16|1|0.39|ENSG00000115904|chr2:39035270-39035271|AA/-|frameshift_variant;SOS1|p.F494Vfs*9|1|0.13|ENSG00000115904|chr2:39022949-39022950|-/T|frameshift_variant SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.1459655761719 3 312.175015 933.503215 NaN NaN NaN NaN NaN NaN NaN 23.764 1 23.764 23.264 24.264 0 0 0 0 0.21486 1 4067 4067 0.45834 0 1 49610 2892 33025 33046 48660 48660 0.03380320474570908 VGNYVRNI 8 Unmodified _VGNYVRNI_ 0 0 0 SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1;SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant;nc|ENSG00000115904|Q07889-2|SOS1;SOS1|p.L339Tfs*16|1|0.39|ENSG00000115904|chr2:39035270-39035271|AA/-|frameshift_variant;SOS1|p.F494Vfs*9|1|0.13|ENSG00000115904|chr2:39022949-39022950|-/T|frameshift_variant SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 312.1621398925781 3 312.175015 933.503215 NaN NaN NaN NaN NaN NaN NaN 29.061 1 27.188 26.688 27.688 -1.8726 0 0 0 0.21486 1 4931 4931 0.45834 0 1 49611 2892 33025 33046 48661 48661 0.03380320474570908 VGPAAALT 8 Unmodified _VGPAAALT_ 0 0 0 ENSG00000251493|ENST00000615637|FOXD1 ENSG00000251493|ENST00000615637|FOXD1 ENSG00000251493|ENST00000615637|FOXD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 350.2051696777344 2 350.205421 698.39629 NaN NaN NaN NaN NaN NaN NaN 114.72 1 114.72 114.22 115.22 0 0 0 0 0.21486 1 22569 22569 2.5775 0 1 49612 7908 33026 33047 48662 48662 0.03502770260183752 VGPAKPPR 8 Unmodified _VGPAKPPR_ 0 0 0 ENSG00000255587|ENST00000612677|RAB44 ENSG00000255587|ENST00000612677|RAB44 ENSG00000255587|ENST00000612677|RAB44 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.1284484863281 2 411.253237 820.491922 -0.69516 -0.00028589 -1.2798 -0.00052633 -1.975 -0.00081222 411.25344595185794 12.632 0.17367 11.503 11.421 11.595 -1.1293 6 4 2 0 0 0 1.0271 1 1586 1586 2.5775 0 1 99118 49613 7933 33027 33048 48663 48663 0.07449543171082951 VGPAPHLA 8 Unmodified _VGPAPHLA_ 0 0 0 REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21893310546875 2 381.218863 760.423173 -0.19129 -7.2925E-05 0.28507 0.00010867 0.093776 3.5749E-05 381.2189116999908 54.435 0.55711 54.435 54.172 54.729 0 26 15 2 0 0 0 8448 1 10355 10355 0.62683 0 1 1680000 + 49614 20269 33028 33049 48664 48664 0.033378788713775975 VGPAPHLA 8 Unmodified _VGPAPHLA_ 0 0 0 REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2188415527344 2 381.218863 760.423173 -0.34169 -0.00013026 0.7087 0.00027017 0.36702 0.00013991 381.21900116265107 57.392 0.60239 54.498 54.166 54.769 -2.8944 34 16 3 0 0 0 0.72231 3 11019 11003;11015;11019 11.114 0 1 1798300 + 49615 20269 33028 33049 48665;48666;48667 48667 0.033378788713775975 VGPAPHLA 8 Unmodified _VGPAPHLA_ 0 0 0 REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21893310546875 2 381.218863 760.423173 0.073383 2.7975E-05 0.094552 3.6045E-05 0.16794 6.402E-05 381.2188030009781 57.653 0.60677 54.402 54.009 54.616 -3.2517 28 16 2 0 0 0 8448 2 10697 10697;10738 1.7423 0 1 1051200 + 49616 20269 33028 33049 48668;48669 48668 0.033378788713775975 VGPAPHLA 8 Unmodified _VGPAPHLA_ 0 0 0 REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2188720703125 2 381.218863 760.423173 -0.61293 -0.00023366 1.0564 0.00040274 0.44352 0.00016908 381.21910753293406 57.642 0.80509 54.437 53.938 54.743 -3.2052 44 22 3 0 0 0 0.72231 4 10744 10704;10741;10744;10791 11.114 0 1 1440400 + 49617 20269 33028 33049 48670;48671;48672;48673 48672 0.033378788713775975 VGPAPHLA 8 Unmodified _VGPAPHLA_ 0 0 0 REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 381.218863 760.423173 -0.19129 -7.2925E-05 0.28507 0.00010867 0.093776 3.5749E-05 381.2189116999908 54.435 0.55711 54.435 54.172 54.729 0 -0.0076522 -0.00018351 NaN 11.114 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1680000 + 49618 20269 33028 33049 0.033378788713775975 VGPAPHLA 8 Unmodified _VGPAPHLA_ 0 0 0 REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 381.218863 760.423173 0.073383 2.7975E-05 0.094552 3.6045E-05 0.16794 6.402E-05 381.2188030009781 57.653 0.60677 54.402 54.009 54.616 -3.2517 -0.041362 -0.00032877 NaN 11.114 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1051200 + 49619 20269 33028 33049 0.033378788713775975 VGPAQSGLLQ 10 Unmodified _VGPAQSGLLQ_ 0 0 0 nc|ENSG00000063322|Q9NX70-2|MED29;ENSG00000063322|ENST00000315588|MED29 nc|ENSG00000063322|Q9NX70-2|MED29 nc|ENSG00000063322|Q9NX70-2|MED29 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.79205322265625 3 323.850308 968.529095 NaN NaN NaN NaN NaN NaN NaN 17.529 1 16.257 15.757 16.757 -1.2722 0 0 0 0.22588 1 2586 2586 0.77653 0 1 49620 12224 33029 33050 48674 48674 0.04357169926197457 VGPARFRA 8 Unmodified _VGPARFRA_ 0 0 0 ENSG00000115073|ENST00000289228|ACTR1B ENSG00000115073|ENST00000289228|ACTR1B ENSG00000115073|ENST00000289228|ACTR1B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2157897949219 2 437.256311 872.49807 NaN NaN NaN NaN NaN NaN NaN 13.912 1 12.739 12.239 13.239 -1.173 0 0 0 0.21486 1 1845 1845 0.79363 0 1 49621 2822 33030 33051 48675 48675 0.05672061402606232 VGPCCTCCCCM 11 Unmodified _VGPCCTCCCCM_ 0 0 0 nc|ENSG00000112212|Q5TGU0-2|TSPO2 nc|ENSG00000112212|Q5TGU0-2|TSPO2 nc|ENSG00000112212|Q5TGU0-2|TSPO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 561.731201171875 2 561.655515 1121.29648 NaN NaN NaN NaN NaN NaN NaN 163.67 1 158.6 158.1 159.1 -5.0648 0 0 0 0.22632 1 31859 31859 0 0 1 49622 12286 33031 33052 48676 48676 -0.2593202538175774 VGPCGVGG 8 Unmodified _VGPCGVGG_ 0 0 0 ENST00000474057.5_2_14:23817461-23821194:-|nuORF;nc|ENSG00000092096|Q8WUG5-3|SLC22A17;ENST00000557699.5_1_14:23818379-23821759:-|nuORF;ENSG00000092096|ENST00000354772|SLC22A17;nc|ENSG00000092096|Q8WUG5|SLC22A17 ENST00000474057.5_2_14:23817461-23821194:-|nuORF ENST00000474057.5_2_14:23817461-23821194:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1561279296875 2 323.154874 644.295196 NaN NaN NaN NaN NaN NaN NaN 38.734 1 36.329 35.829 36.829 -2.4049 0 0 0 0.21486 1 6901 6901 0.79363 0 1 49623 1825 33032 33053 48677 48677 -0.041180047141665455 VGPCLPAP 8 Unmodified _VGPCLPAP_ 0 0 0 REV__nc|ENSG00000197558|A2VEC9|SSPOP REV__nc|ENSG00000197558|A2VEC9|SSPOP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 377.2244567871094 2 377.201825 752.389096 NaN NaN NaN NaN NaN NaN NaN 94.151 1 90.307 89.807 90.807 -3.844 0 0 0 0.23711 1 18059 18059 0.12286 0 1 + 49624 24229 33033 33054 48678 48678 0.0029971438810889595 VGPDKETQ 8 Unmodified _VGPDKETQ_ 0 0 0 REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1 REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2218322753906 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 37.865 1 35.528 35.028 36.028 -2.3375 0 0 0 0.22684 1 6714 6714 0.12286 0 1 + 49625 14620 33034 33055 48679 48679 -0.01735371270228825 VGPDPIPL 8 Unmodified _VGPDPIPL_ 0 0 0 REV__ENST00000473039.5_1_9:126143713-126520026:-|nuORF REV__ENST00000473039.5_1_9:126143713-126520026:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 404.2064208984375 2 404.234179 806.453805 NaN NaN NaN NaN NaN NaN NaN 66.285 1 63.238 62.738 63.738 -3.047 0 0 0 0.23711 1 12841 12841 0.62683 0 1 + 49626 15582 33035 33056 48680 48680 0.04283612465758324 VGPDQARM 8 Unmodified _VGPDQARM_ 0 0 0 REV__ENSG00000243978|ENST00000520821|RTL9 REV__ENSG00000243978|ENST00000520821|RTL9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2163391113281 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 152.57 1 152.57 152.07 153.07 0 0 0 0 0.21486 1 30561 30561 2.5775 0 1 + 49627 19806 33036 33057 48681 48681 -0.023875877025943737 VGPEAELGWTW 11 Unmodified _VGPEAELGWTW_ 0 0 0 ENST00000238379.9_1_9:116136606-116136687:-|nuORF ENST00000238379.9_1_9:116136606-116136687:-|nuORF ENST00000238379.9_1_9:116136606-116136687:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7802124023438 2 622.800946 1243.58734 NaN NaN NaN NaN NaN NaN NaN 144.47 1 139.8 139.3 140.3 -4.6694 0 0 0 0.23379 1 28606 28606 5.2969 0.39987 1 49628 8173 33037 33058 48682 48682 -0.024711932191848973 VGPEKKSE 8 Unmodified _VGPEKKSE_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2357482910156 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 64.245 1 64.245 63.745 64.745 0 0 0 0 0.21486 1 12367 12367 7.9102 0 1 + 49629 13287 33038 33059 48683 48683 0.019015056264720442 VGPEKKSE 8 Unmodified _VGPEKKSE_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2164306640625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 70.347 1 70.347 69.847 70.847 0 0 0 0 0.21486 1 13625 13625 9.3474 2.9933 1 + 49630 13287 33038 33059 48684 48684 0.019015056264720442 VGPEQGMR 8 Unmodified _VGPEQGMR_ 0 0 0 REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21661376953125 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 112.27 1 112.27 111.77 112.77 0 0 0 0 0.21486 1 22088 22088 5.7604 0 1 + 49631 13946 33039 33060 48685 48685 -0.023875877025943737 VGPEQGMR 8 Unmodified _VGPEQGMR_ 0 0 0 REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.216552734375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 76.393 1 72.978 72.478 73.478 -3.4151 0 0 0 0.21486 1 14910 14910 8.5933 1.304 1 + 49632 13946 33039 33060 48686 48686 -0.023875877025943737 VGPEQGMR 8 Unmodified _VGPEQGMR_ 0 0 0 REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2353515625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 89.538 1 85.494 84.994 85.994 -4.0443 0 0 0 0.21486 1 17061 17061 10.183 0 1 + 49633 13946 33039 33060 48687 48687 -0.023875877025943737 VGPEQGMR 8 Unmodified _VGPEQGMR_ 0 0 0 REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21673583984375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 127.14 1 122.44 121.94 122.94 -4.6998 0 0 0 0.21486 1 24458 24458 9.3474 0 1 + 49634 13946 33039 33060 48688 48688 -0.023875877025943737 VGPESLRLALP 11 Unmodified _VGPESLRLALP_ 0 0 0 REV__ENST00000561543.5_1_15:52971212-52971488:-|nuORF REV__ENST00000561543.5_1_15:52971212-52971488:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3164672851562 2 576.342781 1150.67101 0.16675 9.6106E-05 -0.55519 -0.00031998 -0.38844 -0.00022387 576.3411905760933 128.54 0.1747 123.8 123.73 123.9 -4.7408 7 4 2 0 0 0 0.66106 1 24726 24726 0.026206 0 1 610580 + 49635 23056 33040 33061 48689 48689 0.10169962948498323 VGPFVMRV 8 Unmodified _VGPFVMRV_ 0 0 0 REV__ENST00000394196.8_1_15:93570474-93570519:+|nuORF REV__ENST00000394196.8_1_15:93570474-93570519:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.1742858886719 3 302.173958 903.500044 NaN NaN NaN NaN NaN NaN NaN 67.438 1 67.438 66.938 67.938 0 0 0 0 0.21486 1 13036 13036 0.45834 0 1 + 49636 21245 33041 33062 48690 48690 0.044433540962018014 VGPGDCNDYTY 11 Unmodified _VGPGDCNDYTY_ 0 0 0 REV__ENSG00000183876|ENST00000328668|ARSI REV__ENSG00000183876|ENST00000328668|ARSI MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2853393554688 2 602.234778 1202.455 NaN NaN NaN NaN NaN NaN NaN 77.12 1 77.12 76.62 77.62 0 0 0 0 0.23264 1 14990 14990 6.2058 1.4498 1 + 49637 18873 33042 33063 48691 48691 -0.13812586018320872 VGPGDVLY 8 Unmodified _VGPGDVLY_ 0 0 0 ENSG00000166135|ENST00000299163|HIF1AN ENSG00000166135|ENST00000299163|HIF1AN ENSG00000166135|ENST00000299163|HIF1AN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 410.18109130859375 2 410.215986 818.417419 NaN NaN NaN NaN NaN NaN NaN 95.057 1 90.866 90.366 91.366 -4.1911 0 0 0 0.21486 1 18141 18141 2.8892 0 1 49638 5689 33043 33064 48692 48692 0.0009473556905277292 VGPGEIMKM 9 Unmodified _VGPGEIMKM_ 0 0 0 ENST00000524634.5_1_2:228190068-228197215:+|nuORF ENST00000524634.5_1_2:228190068-228197215:+|nuORF ENST00000524634.5_1_2:228190068-228197215:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 321.2059020996094 3 321.166363 960.477259 NaN NaN NaN NaN NaN NaN NaN 38.814 1 36.265 35.765 36.765 -2.5491 0 0 0 0.23508 1 7206 7206 1.0715 0 1 49639 10886 33044 33065 48693 48693 -0.004560330835715831 VGPGEIMKM 9 Unmodified _VGPGEIMKM_ 0 0 0 ENST00000524634.5_1_2:228190068-228197215:+|nuORF ENST00000524634.5_1_2:228190068-228197215:+|nuORF ENST00000524634.5_1_2:228190068-228197215:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 321.2065124511719 3 321.166363 960.477259 NaN NaN NaN NaN NaN NaN NaN 38.608 1 36.166 35.666 36.666 -2.4419 0 0 0 0.23508 1 6876 6876 1.0715 0.56551 1 49640 10886 33044 33065 48694 48694 -0.004560330835715831 VGPGLRRQP 9 Unmodified _VGPGLRRQP_ 0 0 0 ENST00000393313.5_1_7:127032378-127032531:-|nuORF ENST00000393313.5_1_7:127032378-127032531:-|nuORF ENST00000393313.5_1_7:127032378-127032531:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2561340332031 2 490.293425 978.572297 NaN NaN NaN NaN NaN NaN NaN 29.7 1 29.7 29.2 30.2 0 0 0 0 0.23508 1 5317 5317 8.5933 0 1 49641 9391 33045 33066 48695 48695 0.08215404494126233 VGPGNLQEGE 10 Unmodified _VGPGNLQEGE_ 0 0 0 CON__P50448 CON__P50448 CON__P50448 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.82928466796875 3 333.829573 998.466889 NaN NaN NaN NaN NaN NaN NaN 47.504 1 47.504 47.004 48.004 0 0 0 0 0.22588 1 8960 8960 0.69767 0.23933 1 + 49642 674 33046 33067 48696 48696 -0.03240601212792171 VGPGSGLP 8 Unmodified _VGPGSGLP_ 0 0 0 REV__ENSG00000198455|ENST00000374888|ZXDB REV__ENSG00000198455|ENST00000374888|ZXDB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 342.22003173828125 2 342.189771 682.36499 NaN NaN NaN NaN NaN NaN NaN 62.433 1 59.472 58.972 59.972 -2.9614 0 0 0 0.21486 1 12048 12048 2.8892 0 1 + 49643 19415 33047 33068 48697 48697 0.011101972260917137 VGPGSPKMSS 10 Unmodified _VGPGSPKMSS_ 0 0 0 REV__ENST00000453558.1_1_6:30222153-30293835:-|nuORF REV__ENST00000453558.1_1_6:30222153-30293835:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1600646972656 3 316.160265 945.458967 NaN NaN NaN NaN NaN NaN NaN 45.619 1 42.753 42.253 43.253 -2.8666 0 0 0 0.22588 1 8284 8284 0.77653 0.31819 1 + 49644 21831 33048 33069 48698 48698 -0.01594451733922142 VGPHGAVSAT 10 Unmodified _VGPHGAVSAT_ 0 0 0 ENST00000586544.1_1_19:10798526-10798769:+|nuORF ENST00000586544.1_1_19:10798526-10798769:+|nuORF ENST00000586544.1_1_19:10798526-10798769:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 448.3515930175781 2 448.235242 894.45593 NaN NaN NaN NaN NaN NaN NaN 73.812 1 70.448 69.948 70.948 -3.3643 0 0 0 0.22588 1 14391 14391 3.9444 1.3669 1 49645 11553 33049 33070 48699 48699 0.004480412035604786 VGPHGPVG 8 Unmodified _VGPHGPVG_ 0 0 0 REV__ENSG00000081052|ENST00000396625|COL4A4 REV__ENSG00000081052|ENST00000396625|COL4A4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2110900878906 2 360.195388 718.376223 NaN NaN NaN NaN NaN NaN NaN 34.824 1 32.547 32.047 33.047 -2.2766 0 0 0 0.2396 1 6112 6112 0 0 1 + 49646 14424 33050 33071 48700 48700 0.0057701932023519475 VGPHHHVGWGP 11 Unmodified _VGPHHHVGWGP_ 0 0 0 REV__ADCY5|p.L820Tfs*74|1|0.32|ENSG00000173175|chr3:123304169-123304170|-/G|frameshift_variant REV__ADCY5|p.L820Tfs*74|1|0.32|ENSG00000173175|chr3:123304169-123304170|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.259765625 2 590.293956 1178.57336 NaN NaN NaN NaN NaN NaN NaN 157.2 1 152.41 151.91 152.91 -4.7885 0 0 0 0.22632 1 31262 31262 0.0059557 0 1 + 49647 12956 33051 33072 48701 48701 -0.008783811369767136 VGPHQGVR 8 Unmodified _VGPHQGVR_ 0 0 0 DMGDH|p.Q527Rfs*2|1|0.04|ENSG00000132837|chr5:79030927-79030936|GCTACTCTTT/-|frameshift_variant;ENST00000518477.5_1_5:78317432-78365396:-|nuORF;DMGDH|p.N837Ifs*13|1|0.28|ENSG00000132837|chr5:78998173-78998173|T/-|frameshift_variant;ENSG00000132837|ENST00000255189|DMGDH DMGDH|p.Q527Rfs*2|1|0.04|ENSG00000132837|chr5:79030927-79030936|GCTACTCTTT/-|frameshift_variant DMGDH|p.Q527Rfs*2|1|0.04|ENSG00000132837|chr5:79030927-79030936|GCTACTCTTT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2378845214844 2 425.238119 848.461684 NaN NaN NaN NaN NaN NaN NaN 16.83 1 15.476 14.976 15.976 -1.3534 0 0 0 0.21486 1 2407 2407 5.7604 2.8712 1 49648 854 33052 33073 48702 48702 0.031391845059033585 VGPILHGG 8 Unmodified _VGPILHGG_ 0 0 0 REV__ENST00000563678.1_1_16:31717492-31719413:+|nuORF REV__ENST00000563678.1_1_16:31717492-31719413:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21807861328125 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 54.749 1 54.749 54.249 55.249 0 0 0 0 0.2396 1 10444 10444 0 0 1 + 49649 23083 33053 33074 48703 48703 0.038898788713822796 VGPILHGG 8 Unmodified _VGPILHGG_ 0 0 0 REV__ENST00000563678.1_1_16:31717492-31719413:+|nuORF REV__ENST00000563678.1_1_16:31717492-31719413:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2109375 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 73.335 1 70.024 69.524 70.524 -3.3107 0 0 0 0.2396 1 14298 14298 0 0 1 + 49650 23083 33053 33074 48704 48704 0.038898788713822796 VGPILHGG 8 Unmodified _VGPILHGG_ 0 0 0 REV__ENST00000563678.1_1_16:31717492-31719413:+|nuORF REV__ENST00000563678.1_1_16:31717492-31719413:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2192077636719 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 46.526 1 43.661 43.161 44.161 -2.8653 0 0 0 0.2396 1 8460 8460 0 0 1 + 49651 23083 33053 33074 48705 48705 0.038898788713822796 VGPIRRGG 8 Unmodified _VGPIRRGG_ 0 0 0 ENST00000285605.7_1_10:99474680-99474815:+|nuORF ENST00000285605.7_1_10:99474680-99474815:+|nuORF ENST00000285605.7_1_10:99474680-99474815:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3755493164062 1 811.489696 810.48242 0.3284 0.00026649 0.4525 0.0003672 0.78089 0.00063369 811.4897908501707 142.91 0.4236 137.89 137.65 138.07 -5.0261 17 11 2 0 0 0 8448 1 27532 27532 0 0 1 2486200 49652 8459 33054 33075 48706 48706 0.06959774885569914 VGPITPLDR 9 Unmodified _VGPITPLDR_ 0 0 0 REV__ENSG00000187840|ENST00000338825|EIF4EBP1 REV__ENSG00000187840|ENST00000338825|EIF4EBP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.0254211425781 3 323.190553 966.549831 0.16557 5.3511E-05 0.33617 0.00010865 0.50174 0.00016216 323.1905507337392 26.724 0.32118 25.089 24.891 25.212 -1.6347 10 8 2 0 0 0 0.88413 1 4419 4419 1.0715 0 1 544280 + 49653 19115 33055 33076 48707 48707 0.06521760305849966 VGPITPLDR 9 Unmodified _VGPITPLDR_ 0 0 0 REV__ENSG00000187840|ENST00000338825|EIF4EBP1 REV__ENSG00000187840|ENST00000338825|EIF4EBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 323.190553 966.549831 -0.41781 -0.00013503 0.07653 2.4734E-05 -0.34128 -0.0001103 323.19057775627215 25.107 0.31136 25.107 25.013 25.324 0 0.041481 -0.00026916 NaN 1.0715 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 828680 + 49654 19115 33055 33076 0.06521760305849966 VGPITPLDR 9 Unmodified _VGPITPLDR_ 0 0 0 REV__ENSG00000187840|ENST00000338825|EIF4EBP1 REV__ENSG00000187840|ENST00000338825|EIF4EBP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 323.190553 966.549831 -0.59126 -0.00019109 0.64401 0.00020814 0.052748 1.7048E-05 323.1907200262021 26.922 0.34627 25 24.776 25.122 -1.9222 -0.065165 0.00028105 NaN 1.0715 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 428340 + 49655 19115 33055 33076 0.06521760305849966 VGPKKLLHCIH 11 Unmodified _VGPKKLLHCIH_ 0 0 0 CHEK2|p.N154Kfs*32|1|0.21|ENSG00000183765|chr22:28725107-28725108|-/T|frameshift_variant CHEK2|p.N154Kfs*32|1|0.21|ENSG00000183765|chr22:28725107-28725108|-/T|frameshift_variant CHEK2|p.N154Kfs*32|1|0.21|ENSG00000183765|chr22:28725107-28725108|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.764404296875 2 622.868443 1243.72233 NaN NaN NaN NaN NaN NaN NaN 120.65 1 116.13 115.63 116.63 -4.5221 0 0 0 0.22632 1 23786 23786 0.026206 0 1 49656 523 33056 33077 48708 48708 0.11022008441568687 VGPKKSIV 8 Unmodified _VGPKKSIV_ 0 0 0 REV__ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant REV__ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 414.2157897949219 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 28.244 1 26.248 25.748 26.748 -1.9962 0 0 0 0.23711 1 4758 4758 0.0082765 0 1 + 49657 13155 33057 33078 48709 48709 0.10743580628093241 VGPKLAKLQLL 11 Unmodified _VGPKLAKLQLL_ 0 0 0 REV__ENSG00000105550|ENST00000593756|FGF21 REV__ENSG00000105550|ENST00000593756|FGF21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.265625 2 590.394816 1178.77508 NaN NaN NaN NaN NaN NaN NaN 124.37 1 119.78 119.28 120.28 -4.5926 0 0 0 0.23698 1 23928 23928 1.4819 0.15237 1 + 49658 15001 33058 33079 48710 48710 0.19284289776032892 VGPKLKINPA 10 Unmodified _VGPKLKINPA_ 0 0 0 REV__ENST00000504384.5_1_4:76440662-76442198:+|nuORF REV__ENST00000504384.5_1_4:76440662-76442198:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.2123718261719 3 346.221965 1035.64407 NaN NaN NaN NaN NaN NaN NaN 77.461 1 73.997 73.497 74.497 -3.4633 0 0 0 2.8426 1 15124 15124 0.043787 0 1 + 49659 18432 33059 33080 48711 48711 0.12766899127973375 VGPKQVQAS 9 Unmodified _VGPKQVQAS_ 0 0 0 nc|ENSG00000157152|Q92777-2|SYN2 nc|ENSG00000157152|Q92777-2|SYN2 nc|ENSG00000157152|Q92777-2|SYN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.08148193359375 3 305.174903 912.50288 NaN NaN NaN NaN NaN NaN NaN 74.401 1 74.401 73.901 74.901 0 0 0 0 0.23508 1 14445 14445 1.1933 0 1 49660 12395 33060 33081 48712 48712 0.043129007547122455 VGPLHGGP 8 Unmodified _VGPLHGGP_ 0 0 0 REV__ENST00000512683.1_1_6:43745239-43745287:+|nuORF REV__ENST00000512683.1_1_6:43745239-43745287:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 366.7998352050781 2 367.203213 732.391873 0.090416 3.3201E-05 0.089315 3.2797E-05 0.17973 6.5998E-05 367.2031467268532 44.867 0.49171 44.867 44.673 45.165 0 17 13 2 0 0 0 0.89646 1 8448 8448 0.13829 0 1 481970 + 49661 22560 33061 33082 48713 48713 0.014973058372902415 VGPLHGGP 8 Unmodified _VGPLHGGP_ 0 0 0 REV__ENST00000512683.1_1_6:43745239-43745287:+|nuORF REV__ENST00000512683.1_1_6:43745239-43745287:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 367.203213 732.391873 -0.31629 -0.00011614 0.32782 0.00012038 0.011535 4.2358E-06 367.2032369214736 47.877 0.49241 45.008 44.706 45.199 -2.869 0.089072 0.0001498 NaN 0.13829 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 790210 + 49662 22560 33061 33082 0.014973058372902415 VGPLHGGP 8 Unmodified _VGPLHGGP_ 0 0 0 REV__ENST00000512683.1_1_6:43745239-43745287:+|nuORF REV__ENST00000512683.1_1_6:43745239-43745287:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 367.203213 732.391873 0.010665 3.916E-06 0.0040577 1.49E-06 0.014722 5.4061E-06 367.20313248195356 47.823 0.38809 44.881 44.686 45.074 -2.9421 -0.037198 -8.7971E-05 NaN 0.13829 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 896450 + 49663 22560 33061 33082 0.014973058372902415 VGPLLHLR 8 Unmodified _VGPLLHLR_ 0 0 0 REV__ENST00000473338.1_1_2:106710484-106713932:-|nuORF REV__ENST00000473338.1_1_2:106710484-106713932:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 302.0380859375 3 302.19575 903.565421 NaN NaN NaN NaN NaN NaN NaN 63.491 1 60.075 59.575 60.575 -3.4158 0 0 0 0.21486 1 11861 11861 0.45834 0 1 + 49664 22071 33062 33083 48714 48714 0.10978091613571905 VGPLLLLVQL 10 Unmodified _VGPLLLLVQL_ 0 0 0 REV__ENST00000526104.5_2_11:208097-208547:+|nuORF REV__ENST00000526104.5_2_11:208097-208547:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2725830078125 2 532.857535 1063.70052 0.09455 5.0382E-05 -1.8995 -0.0010122 -1.805 -0.00096181 532.8550004473071 141.93 0.20422 141.93 141.75 141.95 0 6 5 2 0 0 0 1.1344 1 28267 28267 0 0 1 2135800 + 49665 22687 33063 33084 48715 48715 0.17121526964638178 VGPLNNFNS 9 Unmodified _VGPLNNFNS_ 0 0 0 REV__nc|ENSG00000240268|A6NHM9|MOXD2P REV__nc|ENSG00000240268|A6NHM9|MOXD2P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.239990234375 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 154.17 1 154.17 153.67 154.67 0 0 0 0 0.19649 1 30899 30899 0.073264 0.064987 1 + 49666 24285 33064 33085 48716 48716 -0.015319761420073519 VGPLNNFNS 9 Unmodified _VGPLNNFNS_ 0 0 0 REV__nc|ENSG00000240268|A6NHM9|MOXD2P REV__nc|ENSG00000240268|A6NHM9|MOXD2P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2395935058594 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 165.01 1 165.01 164.51 165.51 0 0 0 0 0.19679 1 33434 33434 0.073264 0 1 + 49667 24285 33064 33085 48717 48717 -0.015319761420073519 VGPLNNFNS 9 Unmodified _VGPLNNFNS_ 0 0 0 REV__nc|ENSG00000240268|A6NHM9|MOXD2P REV__nc|ENSG00000240268|A6NHM9|MOXD2P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2396240234375 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 174.08 1 174.08 173.58 174.58 0 0 0 0 0.19649 1 36027 36027 0.073264 0.0092761 1 + 49668 24285 33064 33085 48718 48718 -0.015319761420073519 VGPLNNFNS 9 Unmodified _VGPLNNFNS_ 0 0 0 REV__nc|ENSG00000240268|A6NHM9|MOXD2P REV__nc|ENSG00000240268|A6NHM9|MOXD2P MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2414245605469 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 138.82 1 133.87 133.37 134.37 -4.952 0 0 0 0.19649 1 26698 26698 0.073264 0 1 + 49669 24285 33064 33085 48719 48719 -0.015319761420073519 VGPLNNFNS 9 Unmodified _VGPLNNFNS_ 0 0 0 REV__nc|ENSG00000240268|A6NHM9|MOXD2P REV__nc|ENSG00000240268|A6NHM9|MOXD2P MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23968505859375 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 156.45 1 151.18 150.68 151.68 -5.2712 0 0 0 0.19628 1 30343 30343 0.073264 0 1 + 49670 24285 33064 33085 48720 48720 -0.015319761420073519 VGPLNNFNS 9 Unmodified _VGPLNNFNS_ 0 0 0 REV__nc|ENSG00000240268|A6NHM9|MOXD2P REV__nc|ENSG00000240268|A6NHM9|MOXD2P MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2399597167969 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 157.62 1 152.35 151.85 152.85 -5.2712 0 0 0 0.19649 1 30575 30575 0.073264 0 1 + 49671 24285 33064 33085 48721 48721 -0.015319761420073519 VGPLPWLW 8 Unmodified _VGPLPWLW_ 0 0 0 ENST00000454190.6_2_3:9956219-9957488:+|nuORF;nc|ENSG00000163701|Q8NFR9-2|IL17RE;ENSG00000163701|ENST00000383814|IL17RE ENST00000454190.6_2_3:9956219-9957488:+|nuORF ENST00000454190.6_2_3:9956219-9957488:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.1692199707031 3 323.184851 966.532724 NaN NaN NaN NaN NaN NaN NaN 109.19 1 109.19 108.69 109.69 0 0 0 0 0.21486 1 21469 21469 0.45834 0 1 49672 5455 33065 33086 48722 48722 0.048118844906980485 VGPLSKKG 8 Unmodified _VGPLSKKG_ 0 0 0 EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant;nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4;EPHA4|p.M245Cfs*89|1|0.35|ENSG00000116106|chr2:221563821-221563821|T/-|frameshift_variant;EPHA5|p.N483Kfs*21|1|0.4|ENSG00000145242|chr4:65420519-65420520|-/T|frameshift_variant;nc|ENSG00000145242|P54756-3|EPHA5;nc|ENSG00000145242|P54756-2|EPHA5;ENSG00000145242|ENST00000613740|EPHA5;nc|ENSG00000145242|P54756|EPHA5 EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant;nc|ENSG00000145242|P54756-3|EPHA5 EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.39501953125 1 785.487965 784.480688 0.3776 0.0002966 3.107 0.0024405 3.4846 0.0027371 785.4918081289001 152.38 0.10587 147.15 147.07 147.18 -5.2365 4 2 2 0 0 0 8448 1 29540 29540 0 0 1 1034900 49673 2906;4598 33066 33087 48723 48723 0.07982721076950838 VGPLVHLD 8 Unmodified _VGPLVHLD_ 0 0 0 REV__ENST00000225388.8_1_17:27590872-27591025:-|nuORF REV__ENST00000225388.8_1_17:27590872-27591025:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2360534667969 2 425.245078 848.475603 NaN NaN NaN NaN NaN NaN NaN 90.523 1 86.746 86.246 87.246 -3.7779 0 0 0 0.21323 1 17324 17324 14.582 5.2343 1 + 49674 20043 33067 33088 48724 48724 0.04530417214323279 VGPMEETGS 9 Unmodified _VGPMEETGS_ 0 0 0 ENST00000284240.9_1_11:119290018-119290117:-|nuORF ENST00000284240.9_1_11:119290018-119290117:-|nuORF ENST00000284240.9_1_11:119290018-119290117:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7632141113281 2 453.6973 905.380048 NaN NaN NaN NaN NaN NaN NaN 30.834 1 28.717 28.217 29.217 -2.1167 0 0 0 0.19632 1 5582 5582 0.0033805 0 1 49675 8453 33068 33089 48725 48725 -0.07642723758863212 VGPMPVSSR 9 Unmodified _VGPMPVSSR_ 0 0 0 REV__ENSG00000206069|ENST00000640159|LHFPL7 REV__ENSG00000206069|ENST00000640159|LHFPL7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2474670410156 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 179.65 1 174.78 174.28 175.28 -4.868 0 0 0 0.23508 1 35799 35799 2.3027 0.24298 1 + 49676 19610 33069 33090 48726 48726 0.012935583655917071 VGPNGGGK 8 Unmodified _VGPNGGGK_ 0 0 0 tr|U7T3D0|U7T3D0_FUSNUZinctransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00356PE=4SV=1 tr|U7T3D0|U7T3D0_FUSNUZinctransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00356PE=4SV=1 tr|U7T3D0|U7T3D0_FUSNUZinctransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00356PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.1855773925781 2 343.18502 684.355488 NaN NaN NaN NaN NaN NaN NaN 37.024 1 37.024 36.524 37.524 0 0 0 0 0.2396 1 6837 6837 0 0 1 49677 26393 33070 33091 48727 48727 0.0006842894056262594 VGPNLYGLE 9 Unmodified _VGPNLYGLE_ 0 0 0 REV__ENSG00000115486|ENST00000233838|GGCX REV__ENSG00000115486|ENST00000233838|GGCX MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76800537109375 2 481.2531 960.491647 0.054447 2.6203E-05 0.44289 0.00021314 0.49734 0.00023935 481.2532559292357 65.088 1.1882 62.041 61.522 62.71 -3.047 72 34 3 0 0 0 0.5059 1 12676 12676 19.257 4.4187 1 3888300 + 49678 15433 33071 33092 48728 48728 0.009820786605587273 VGPPAHAL 8 Unmodified _VGPPAHAL_ 0 0 0 ENST00000360121.4_1_16:29677113-29677461:+|nuORF ENST00000360121.4_1_16:29677113-29677461:+|nuORF ENST00000360121.4_1_16:29677113-29677461:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2177429199219 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 43.033 1 40.314 39.814 40.814 -2.7191 0 0 0 0.23711 1 8057 8057 0.063987 0 1 49679 9010 33072 33093 48729 48729 0.03337878871366229 VGPPAHAL 8 Unmodified _VGPPAHAL_ 0 0 0 ENST00000360121.4_1_16:29677113-29677461:+|nuORF ENST00000360121.4_1_16:29677113-29677461:+|nuORF ENST00000360121.4_1_16:29677113-29677461:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2178039550781 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 22.647 1 21.194 20.694 21.694 -1.4535 0 0 0 0.2396 1 3619 3619 0 0 1 49680 9010 33072 33093 48730 48730 0.03337878871366229 VGPPAPPT 8 Unmodified _VGPPAPPT_ 0 0 0 ENST00000469556.1_1_1:24122614-24123094:-|nuORF ENST00000469556.1_1_1:24122614-24123094:-|nuORF ENST00000469556.1_1_1:24122614-24123094:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 368.2428894042969 2 368.205421 734.39629 NaN NaN NaN NaN NaN NaN NaN 90.712 1 86.934 86.434 87.434 -3.7779 0 0 0 0.23749 1 17360 17360 0.12286 0 1 49681 10183 33073 33094 48731 48731 0.018467702601810743 VGPPGPAE 8 Unmodified _VGPPGPAE_ 0 0 0 REV__KDM6B|p.K1101Rfs*3|1|0.23|ENSG00000132510|chr17:7849583-7849583|C/-|frameshift_variant REV__KDM6B|p.K1101Rfs*3|1|0.23|ENSG00000132510|chr17:7849583-7849583|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 362.1866455078125 2 362.187229 722.359904 NaN NaN NaN NaN NaN NaN NaN 45.119 1 42.371 41.871 42.871 -2.7475 0 0 0 0.23749 1 8182 8182 0.12286 0 1 + 49682 16120 33074 33095 48732 48732 -0.012381066365264815 VGPPGPGG 8 Unmodified _VGPPGPGG_ 0 0 0 ENST00000265593.8_1_3:184072421-184073273:-|nuORF ENST00000265593.8_1_3:184072421-184073273:-|nuORF ENST00000265593.8_1_3:184072421-184073273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.169921875 2 319.168839 636.323125 NaN NaN NaN NaN NaN NaN NaN 29.652 1 27.535 27.035 28.035 -2.1167 0 0 0 0.2396 1 5335 5335 0 0 1 49683 8360 33075 33096 48733 48733 -0.009583584624238028 VGPPGYLL 8 Unmodified _VGPPGYLL_ 0 0 0 ENST00000559124.1_1_14:102963896-102964591:+|nuORF;ENSG00000196663|ENST00000359520|TECPR2 ENST00000559124.1_1_14:102963896-102964591:+|nuORF ENST00000559124.1_1_14:102963896-102964591:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 408.2515869140625 2 408.236722 814.45889 NaN NaN NaN NaN NaN NaN NaN 99.139 1 99.139 98.639 99.639 0 0 0 0 0.21486 1 19441 19441 2.8892 0 1 49684 7298 33076 33097 48734 48734 0.04423916328380528 VGPPMTVEV 9 Unmodified _VGPPMTVEV_ 0 0 0 REV__PLA2G15|p.A320V|1|0.3|ENSG00000103066|chr16:68259377-68259377|C/T|missense_variant REV__PLA2G15|p.A320V|1|0.3|ENSG00000103066|chr16:68259377-68259377|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16510009765625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 80.458 1 80.458 79.958 80.958 0 0 0 0 0.19638 1 15664 15664 0.073264 0 1 + 49685 24478 33077 33098 48735 48735 0.006916204142157767 VGPPMTVEV 9 Unmodified _VGPPMTVEV_ 0 0 0 REV__PLA2G15|p.A320V|1|0.3|ENSG00000103066|chr16:68259377-68259377|C/T|missense_variant REV__PLA2G15|p.A320V|1|0.3|ENSG00000103066|chr16:68259377-68259377|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650695800781 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 92.36 1 88.266 87.766 88.766 -4.0946 0 0 0 0.19624 1 17594 17594 0 0 1 + 49686 24478 33077 33098 48736 48736 0.006916204142157767 VGPPMTVEV 9 Unmodified _VGPPMTVEV_ 0 0 0 REV__PLA2G15|p.A320V|1|0.3|ENSG00000103066|chr16:68259377-68259377|C/T|missense_variant REV__PLA2G15|p.A320V|1|0.3|ENSG00000103066|chr16:68259377-68259377|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 95.462 1 91.271 90.771 91.771 -4.1911 0 0 0 0.19624 1 18218 18218 0 0 1 + 49687 24478 33077 33098 48737 48737 0.006916204142157767 VGPPMTVEV 9 Unmodified _VGPPMTVEV_ 0 0 0 REV__PLA2G15|p.A320V|1|0.3|ENSG00000103066|chr16:68259377-68259377|C/T|missense_variant REV__PLA2G15|p.A320V|1|0.3|ENSG00000103066|chr16:68259377-68259377|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1655578613281 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 144.21 1 139.15 138.65 139.65 -5.0671 0 0 0 0.19624 1 27814 27814 0 0 1 + 49688 24478 33077 33098 48738 48738 0.006916204142157767 VGPPPPVS 8 Unmodified _VGPPPPVS_ 0 0 0 nc|ENSG00000110435|O00330-3|PDHX;ENSG00000110435|ENST00000227868|PDHX nc|ENSG00000110435|O00330-3|PDHX nc|ENSG00000110435|O00330-3|PDHX MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2117004394531 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 63.955 1 60.958 60.458 61.458 -2.9975 0 0 0 0.23711 1 12363 12363 0.0082765 0 1 49689 2576 33078 33099 48739 48739 0.02767056777236121 VGPQAVDIY 9 Unmodified _VGPQAVDIY_ 0 0 0 ESPN|p.A467V|1|0.06|ENSG00000187017|chr1:6445871-6445871|C/T|missense_variant ESPN|p.A467V|1|0.06|ENSG00000187017|chr1:6445871-6445871|C/T|missense_variant ESPN|p.A467V|1|0.06|ENSG00000187017|chr1:6445871-6445871|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25311279296875 2 481.2531 960.491647 0.23899 0.00011502 -0.011537 -5.5524E-06 0.22746 0.00010946 481.25311439314635 65.101 1.3335 61.818 61.317 62.65 -3.2832 66 38 2 0 0 0 0.54354 1 12360 12360 16.942 2.104 1 3279000 49690 11785 33079 33100 48740 48740 0.009820786605587273 VGPQKVGKT 9 Unmodified _VGPQKVGKT_ 0 0 0 REV__tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1 REV__tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.1602478027344 3 305.187032 912.539266 NaN NaN NaN NaN NaN NaN NaN 67.495 1 64.168 63.668 64.668 -3.3268 0 0 0 0.23508 1 12727 12727 0.96228 0 1 + 49691 25068 33080 33101 48741 48741 0.07949777651424483 VGPRAGMDA 9 Unmodified _VGPRAGMDA_ 0 0 0 REV__ENST00000295984.7_1_3:9988718-9988880:-|nuORF REV__ENST00000295984.7_1_3:9988718-9988880:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2159729003906 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 115.94 1 111.46 110.96 111.96 -4.486 0 0 0 0.23508 1 22858 22858 12.532 1.4171 1 + 49692 20371 33081 33102 48742 48742 -0.023875877026057424 VGPRAGMDA 9 Unmodified _VGPRAGMDA_ 0 0 0 REV__ENST00000295984.7_1_3:9988718-9988880:-|nuORF REV__ENST00000295984.7_1_3:9988718-9988880:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21624755859375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 115.97 1 111.39 110.89 111.89 -4.5815 0 0 0 0.23508 1 22258 22258 11.64 3.047 1 + 49693 20371 33081 33102 48743 48743 -0.023875877026057424 VGPRRAYK 8 Unmodified _VGPRRAYK_ 0 0 0 ENST00000506510.6_1_5:59817897-59817942:-|nuORF ENST00000506510.6_1_5:59817897-59817942:-|nuORF ENST00000506510.6_1_5:59817897-59817942:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.19610595703125 3 316.190888 945.550834 -0.16425 -5.1935E-05 -1.2696 -0.00040145 -1.4339 -0.00045338 316.1903761567983 29.797 0.69503 27.723 27.345 28.04 -2.0743 54 19 4 0 0 0 0.88811 1 5037 5037 0.45834 0 1 4454900 49694 10683 33082 33103 48744 48744 0.07588019465401885 VGPRRRPP 8 Unmodified _VGPRRRPP_ 0 0 0 REV__ENST00000409939.7_1_16:30381377-30381548:-|nuORF REV__ENST00000409939.7_1_16:30381377-30381548:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.1932373046875 3 312.194632 933.562067 NaN NaN NaN NaN NaN NaN NaN 38.146 1 38.146 37.646 38.646 0 0 0 0 0.21486 1 7068 7068 0.45834 0 1 + 49695 21420 33083 33104 48745 48745 0.09262841559552726 VGPSAPGC 8 Unmodified _VGPSAPGC_ 0 0 0 REV__ENST00000538336.5_1_7:33028199-33035805:+|nuORF REV__ENST00000538336.5_1_7:33028199-33035805:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.1645202636719 2 344.160157 686.30576 NaN NaN NaN NaN NaN NaN NaN 32.057 1 32.057 31.557 32.557 0 0 0 0 0.23749 1 5810 5810 0.0082765 0 1 + 49696 22839 33084 33105 48746 48746 -0.04994022059747749 VGPSHETGT 9 Unmodified _VGPSHETGT_ 0 0 0 REV__nc|ENSG00000087884|Q9H7C9-3|AAMDC REV__nc|ENSG00000087884|Q9H7C9-3|AAMDC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 885.4125366210938 1 884.410837 883.40356 0.57448 0.00050807 -0.24968 -0.00022082 0.3248 0.00028725 884.4108856200473 26.421 0.47764 26.421 26.259 26.737 0 15 13 2 0 0 0 0.67531 1 4619 4619 7.9102 1.5561 1 571070 + 49697 14507 33085 33106 48747 48747 -0.04280541930029358 VGPSHETGT 9 Unmodified _VGPSHETGT_ 0 0 0 REV__nc|ENSG00000087884|Q9H7C9-3|AAMDC REV__nc|ENSG00000087884|Q9H7C9-3|AAMDC MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 884.410837 883.40356 0.57448 0.00050807 -0.24968 -0.00022082 0.3248 0.00028725 884.4108856200473 26.421 0.47764 26.421 26.259 26.737 0 0.031501 -0.00015088 NaN 7.9102 15 13 2 NaN NaN NaN NaN 0 NaN NaN 0 571070 + 49698 14507 33085 33106 -0.04280541930029358 VGPSHETGT 9 Unmodified _VGPSHETGT_ 0 0 0 REV__nc|ENSG00000087884|Q9H7C9-3|AAMDC REV__nc|ENSG00000087884|Q9H7C9-3|AAMDC MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 884.410837 883.40356 0.46758 0.00041353 0.10208 9.0276E-05 0.56966 0.00050381 884.410993382854 28.404 0.34974 26.407 26.204 26.554 -1.9962 0.018271 0.00016021 NaN 7.9102 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 599550 + 49699 14507 33085 33106 -0.04280541930029358 VGPSLCDE 8 Unmodified _VGPSLCDE_ 0 0 0 REV__AluJb_dup67344|chrX:101343228-101343524:-|1.349644443152371|0.4295932882606487|1.65|483.0|6|2|sense REV__AluJb_dup67344|chrX:101343228-101343524:-|1.349644443152371|0.4295932882606487|1.65|483.0|6|2|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.1095886230469 2 410.181286 818.348019 NaN NaN NaN NaN NaN NaN NaN 60.521 1 57.588 57.088 58.088 -2.9333 0 0 0 0.21486 1 11647 11647 0.79363 0 1 + 49700 13018 33086 33107 48748 48748 -0.06842091442024412 VGPTAMAEPV 10 Unmodified _VGPTAMAEPV_ 0 0 0 ENST00000492639.5_1_1:95699771-95702959:+|nuORF ENST00000492639.5_1_1:95699771-95702959:+|nuORF ENST00000492639.5_1_1:95699771-95702959:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 486.2462463378906 2 486.24696 970.479368 NaN NaN NaN NaN NaN NaN NaN 126.88 1 126.88 126.38 127.38 0 0 0 0 2.8426 1 25043 25043 0.84494 0.59346 1 49701 10539 33087 33108 48749 48749 -0.007052810741242865 VGPTGPVG 8 Unmodified _VGPTGPVG_ 0 0 0 COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF;ENSG00000164692|ENST00000297268|COL1A2 COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.1557922363281 2 342.189771 682.36499 NaN NaN NaN NaN NaN NaN NaN 123.59 1 123.59 123.09 124.09 0 0 0 0 0.21486 1 24365 24365 0.79363 0 1 49702 621 33088 33109 48750 48750 0.011101972261030824 VGPVANLRH 9 Unmodified _VGPVANLRH_ 0 0 0 nc|ENSG00000163357|Q5T197-2|DCST1;nc|ENSG00000163357|Q5T197-3|DCST1;ENSG00000163357|ENST00000295542|DCST1;DCST1|p.Y129S|1|0.33|ENSG00000163357|chr1:155039526-155039526|A/C|missense_variant nc|ENSG00000163357|Q5T197-2|DCST1 nc|ENSG00000163357|Q5T197-2|DCST1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7822570800781 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 124.84 1 124.84 124.34 125.34 0 0 0 0 0.1966 1 24620 24620 0.029283 0 1 49703 5420 33089 33110 48751 48751 0.06343715602781685 VGPVQKFV 8 Unmodified _VGPVQKFV_ 0 0 0 ENSG00000186862|ENST00000619208|PDZD7 ENSG00000186862|ENST00000619208|PDZD7 ENSG00000186862|ENST00000619208|PDZD7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21527099609375 2 437.263271 872.511988 NaN NaN NaN NaN NaN NaN NaN 32.289 1 32.289 31.789 32.789 0 0 0 0 0.21486 1 5860 5860 6.3541 0.59368 1 49704 7078 33090 33111 48752 48752 0.07063294111037521 VGPVVPILL 9 Unmodified _VGPVVPILL_ 0 0 0 REV__ENSG00000171861|ENST00000304478|MRM3 REV__ENSG00000171861|ENST00000304478|MRM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7608642578125 2 453.804771 905.59499 0.1865 8.4634E-05 0.16567 7.5182E-05 0.35217 0.00015982 453.8048253258434 54.577 0.63177 54.577 54.246 54.877 0 30 17 2 0 0 0 0.65768 1 10461 10461 0 0 1 2292600 + 49705 18257 33091 33112 48753 48753 0.13841610839051555 VGPVVPILL 9 Unmodified _VGPVVPILL_ 0 0 0 REV__ENSG00000171861|ENST00000304478|MRM3 REV__ENSG00000171861|ENST00000304478|MRM3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7535095214844 2 453.804771 905.59499 NaN NaN NaN NaN NaN NaN NaN 45.29 1 42.425 41.925 42.925 -2.8653 0 0 0 0.19624 1 8218 8218 0 0 1 + 49706 18257 33091 33112 48754 48754 0.13841610839051555 VGPVVPILL 9 Unmodified _VGPVVPILL_ 0 0 0 REV__ENSG00000171861|ENST00000304478|MRM3 REV__ENSG00000171861|ENST00000304478|MRM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7654724121094 2 453.804771 905.59499 0.030241 1.3724E-05 0.35084 0.00015921 0.38109 0.00017294 453.8048551556982 57.929 0.61996 54.724 54.406 55.026 -3.2052 36 17 3 0 0 0 0.78757 1 10798 10798 2.3027 0 1 2533500 + 49707 18257 33091 33112 48755 48755 0.13841610839051555 VGPYAAAL 8 Unmodified _VGPYAAAL_ 0 0 0 REV__nc|ENSG00000105371|Q14773-2|ICAM4 REV__nc|ENSG00000105371|Q14773-2|ICAM4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2130126953125 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 51.056 1 48.174 47.674 48.674 -2.8824 0 0 0 0.2396 1 9696 9696 0 0 1 + 49708 23991 33092 33113 48756 48756 0.022150567772200702 VGPYAAAL 8 Unmodified _VGPYAAAL_ 0 0 0 REV__nc|ENSG00000105371|Q14773-2|ICAM4 REV__nc|ENSG00000105371|Q14773-2|ICAM4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.212890625 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 51.148 1 48.103 47.603 48.603 -3.0453 0 0 0 0.2396 1 9387 9387 0.30703 0 1 + 49709 23991 33092 33113 48757 48757 0.022150567772200702 VGPYAAAL 8 Unmodified _VGPYAAAL_ 0 0 0 REV__nc|ENSG00000105371|Q14773-2|ICAM4 REV__nc|ENSG00000105371|Q14773-2|ICAM4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21282958984375 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 63.423 1 60.007 59.507 60.507 -3.4158 0 0 0 0.2396 1 11847 11847 0 0 1 + 49710 23991 33092 33113 48758 48758 0.022150567772200702 VGPYFPPP 8 Unmodified _VGPYFPPP_ 0 0 0 REV__nc|ENSG00000140299|Q12982-2|BNIP2 REV__nc|ENSG00000140299|Q12982-2|BNIP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23004150390625 2 437.228897 872.44324 NaN NaN NaN NaN NaN NaN NaN 37.507 1 37.507 37.007 38.007 0 0 0 0 0.23294 1 6935 6935 0.12286 0.058877 1 + 49711 24068 33093 33114 48759 48759 0.0019162981133149515 VGQCNLIEYI 10 Unmodified _VGQCNLIEYI_ 0 0 0 REV__tr|U7SYY7|U7SYY7_FUSNUGTPcyclohydrolase1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=folEPE=3SV=1 REV__tr|U7SYY7|U7SYY7_FUSNUGTPcyclohydrolase1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=folEPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3213500976562 2 576.291899 1150.56925 0.26907 0.00015506 0.69925 0.00040297 0.96832 0.00055804 576.2929596984369 139.93 0.17606 135.08 134.95 135.12 -4.8492 6 4 2 0 0 0 0.67319 1 26962 26962 13.906 0 1 1475000 + 49712 25237 33094 33115 48760 48760 -1.6514655499122455E-05 VGQCNLIEYI 10 Unmodified _VGQCNLIEYI_ 0 0 0 REV__tr|U7SYY7|U7SYY7_FUSNUGTPcyclohydrolase1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=folEPE=3SV=1 REV__tr|U7SYY7|U7SYY7_FUSNUGTPcyclohydrolase1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=folEPE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.291899 1150.56925 0.29521 0.00017013 -2.7434 -0.001581 -2.4482 -0.0014109 576.7905818533171 134.88 0.17577 134.88 134.74 134.92 0 -0.10207 -0.0025609 NaN 13.906 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2790800 + 49713 25237 33094 33115 -1.6514655499122455E-05 VGQDETDDRPE 11 Unmodified _VGQDETDDRPE_ 0 0 0 ENST00000471727.3_1_2:68758519-68795411:+|nuORF;ENST00000445692.5_1_2:68762461-68805151:+|nuORF;ENST00000529851.5_1_2:68740776-68805151:+|nuORF;ENSG00000169621|ENST00000303795|APLF ENST00000471727.3_1_2:68758519-68795411:+|nuORF ENST00000471727.3_1_2:68758519-68795411:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.771728515625 2 630.770571 1259.52659 NaN NaN NaN NaN NaN NaN NaN 43.745 1 43.745 43.245 44.245 0 0 0 0 0.22683 1 8194 8194 10.8 4.5937 1 49714 5994 33095 33116 48761 48761 -0.0927937506012313 VGQDETDDRPE 11 Unmodified _VGQDETDDRPE_ 0 0 0 ENST00000471727.3_1_2:68758519-68795411:+|nuORF;ENST00000445692.5_1_2:68762461-68805151:+|nuORF;ENST00000529851.5_1_2:68740776-68805151:+|nuORF;ENSG00000169621|ENST00000303795|APLF ENST00000471727.3_1_2:68758519-68795411:+|nuORF ENST00000471727.3_1_2:68758519-68795411:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7711181640625 2 630.770571 1259.52659 1.1415 0.00072003 0.11033 6.9595E-05 1.2518 0.00078962 631.27291101381 162.72 0.17068 157.93 157.79 157.96 -4.7898 7 4 2 0 0 0 0.89069 1 32392 32392 0.00056442 0 1 7342800 49715 5994 33095 33116 48762 48762 -0.0927937506012313 VGQDETDDRPE 11 Unmodified _VGQDETDDRPE_ 0 0 0 ENST00000471727.3_1_2:68758519-68795411:+|nuORF;ENST00000445692.5_1_2:68762461-68805151:+|nuORF;ENST00000529851.5_1_2:68740776-68805151:+|nuORF;ENSG00000169621|ENST00000303795|APLF ENST00000471727.3_1_2:68758519-68795411:+|nuORF ENST00000471727.3_1_2:68758519-68795411:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7713012695312 2 630.770571 1259.52659 NaN NaN NaN NaN NaN NaN NaN 50.904 1 47.859 47.359 48.359 -3.0453 0 0 0 0.22632 1 9336 9336 0.00056442 0 1 49716 5994 33095 33116 48763 48763 -0.0927937506012313 VGQFLQRQ 8 Unmodified _VGQFLQRQ_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 488.26934814453125 2 488.272158 974.529764 -0.038441 -1.877E-05 -1.5139 -0.00073921 -1.5524 -0.00075798 488.2712294055094 62.173 1.0056 58.934 58.656 59.661 -3.2395 43 28 2 0 0 0 8448 1 11793 11793 3.5871 1.8448 1 1488500 49717 2618 33096 33117 48764 48764 0.041480093658947226 VGQFLQRQ 8 Unmodified _VGQFLQRQ_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 488.272158 974.529764 -0.12342 -6.0261E-05 -0.67742 -0.00033077 -0.80084 -0.00039103 488.27168493691033 59.124 0.64159 59.124 58.9 59.541 0 0.18023 0.00061344 NaN 3.5871 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1886500 49718 2618 33096 33117 0.041480093658947226 VGQFLQRQ 8 Unmodified _VGQFLQRQ_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 488.272158 974.529764 0.17434 8.5128E-05 -1.3688 -0.00066836 -1.1945 -0.00058324 488.27129959242444 61.78 0.53046 58.818 58.514 59.044 -2.9614 -0.12538 -6.1756E-05 NaN 3.5871 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1290000 49719 2618 33096 33117 0.041480093658947226 VGQFLQRQ 8 Unmodified _VGQFLQRQ_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 488.272158 974.529764 0.27161 0.00013262 -1.4745 -0.00071996 -1.2029 -0.00058734 488.271486600366 62.268 0.94828 58.899 58.602 59.551 -3.3694 -0.044778 -0.00016494 NaN 3.5871 46 26 3 NaN NaN NaN NaN 0 NaN NaN 0 1289900 49720 2618 33096 33117 0.041480093658947226 VGQFLQRQ 8 Unmodified _VGQFLQRQ_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 488.272158 974.529764 -0.038441 -1.877E-05 -1.5139 -0.00073921 -1.5524 -0.00075798 488.2712294055094 62.173 1.0056 58.934 58.656 59.661 -3.2395 -0.010077 -0.00020345 NaN 3.5871 43 28 2 NaN NaN NaN NaN 0 NaN NaN 0 1488500 49721 2618 33096 33117 0.041480093658947226 VGQFVGSG 8 Unmodified _VGQFVGSG_ 0 0 0 ENST00000397358.7_1_8:28748272-28748464:+|nuORF ENST00000397358.7_1_8:28748272-28748464:+|nuORF ENST00000397358.7_1_8:28748272-28748464:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 751.3629760742188 1 750.37808 749.370804 0.16858 0.0001265 0.011562 8.676E-06 0.18015 0.00013518 750.3780257730809 54.317 2.3754 51.18 50.816 53.192 -3.1377 129 67 2 0 0 0 0.73426 1 10230 10230 9.3474 0.75416 1 25361000 49722 9463 33097 33118 48765 48765 -0.013907042622236077 VGQGEEESCR 10 Unmodified _VGQGEEESCR_ 0 0 0 nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.158203125 3 365.157472 1092.45059 NaN NaN NaN NaN NaN NaN NaN 87.931 1 87.931 87.431 88.431 0 0 0 0 0.22588 1 17159 17159 3.3196 0.3244 1 49723 12543 33098 33119 48766 48766 -0.09194050441237778 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21417236328125 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 55.52 1 55.52 55.02 56.02 0 0 0 0 0.21486 1 10602 10602 5.2307 0.90143 1 + 49724 21344 33099 33120 48767 48767 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2109375 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 55.869 1 55.869 55.369 56.369 0 0 0 0 0.23749 1 10668 10668 0.12286 0 1 + 49725 21344 33099 33120 48768 48768 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2101745605469 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 61.359 1 61.359 60.859 61.859 0 0 0 0 0.23749 1 11775 11775 0.12286 0 1 + 49726 21344 33099 33120 48769 48769 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2096862792969 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 68.323 1 68.323 67.823 68.823 0 0 0 0 0.23749 1 13209 13209 0.12286 0 1 + 49727 21344 33099 33120 48770 48770 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2108154296875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 75.722 1 75.722 75.222 76.222 0 0 0 0 0.23749 1 14711 14711 0.12286 0 1 + 49728 21344 33099 33120 48771 48771 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21038818359375 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 78.584 1 78.584 78.084 79.084 0 0 0 0 0.23749 1 15294 15294 0.12286 0 1 + 49729 21344 33099 33120 48772 48772 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2131652832031 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 85.623 1 85.623 85.123 86.123 0 0 0 0 0.2396 1 16710 16710 0.12286 0.11459 1 + 49730 21344 33099 33120 48773 48773 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2107238769531 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 87.219 1 87.219 86.719 87.719 0 0 0 0 0.2396 1 17024 17024 0.12286 0.11459 1 + 49731 21344 33099 33120 48774 48774 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2043151855469 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 87.29 1 87.29 86.79 87.79 0 0 0 0 0.21486 1 17039 17039 2.5775 0 1 + 49732 21344 33099 33120 48775 48775 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2117919921875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 99.265 1 99.265 98.765 99.765 0 0 0 0 0.23749 1 19467 19467 0.12286 0 1 + 49733 21344 33099 33120 48776 48776 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21173095703125 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 102.54 1 102.54 102.04 103.04 0 0 0 0 0.21486 1 20141 20141 2.5775 0 1 + 49734 21344 33099 33120 48777 48777 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2130432128906 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 63.2 1 60.203 59.703 60.703 -2.9975 0 0 0 0.23749 1 12207 12207 0.13829 0.015425 1 + 49735 21344 33099 33120 48778 48778 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20989990234375 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 81.421 1 77.864 77.364 78.364 -3.557 0 0 0 0.23749 1 15900 15900 0.12286 0 1 + 49736 21344 33099 33120 48779 48779 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2101135253906 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 85.453 1 81.789 81.289 82.289 -3.6641 0 0 0 0.23749 1 16706 16706 0.12286 0 1 + 49737 21344 33099 33120 48780 48780 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21844482421875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 85.602 1 81.938 81.438 82.438 -3.6641 0 0 0 0.2396 1 16735 16735 0.12286 0.11459 1 + 49738 21344 33099 33120 48781 48781 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2098083496094 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 85.69 1 82.026 81.526 82.526 -3.6641 0 0 0 0.23749 1 16752 16752 0.12286 0 1 + 49739 21344 33099 33120 48782 48782 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2109375 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 107.97 1 103.65 103.15 104.15 -4.32 0 0 0 0.23749 1 21269 21269 0.12286 0 1 + 49740 21344 33099 33120 48783 48783 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2117614746094 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 64.997 1 61.539 61.039 62.039 -3.4581 0 0 0 0.23749 1 12155 12155 0.12286 0 1 + 49741 21344 33099 33120 48784 48784 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.20819091796875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 65.813 1 62.355 61.855 62.855 -3.4581 0 0 0 0.23749 1 12324 12324 0.12286 0 1 + 49742 21344 33099 33120 48785 48785 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2052917480469 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 66.467 1 62.97 62.47 63.47 -3.4965 0 0 0 0.21486 1 12457 12457 2.5775 0 1 + 49743 21344 33099 33120 48786 48786 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2093505859375 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 68.845 1 65.309 64.809 65.809 -3.5362 0 0 0 0.23749 1 12950 12950 0.12286 0 1 + 49744 21344 33099 33120 48787 48787 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.213623046875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 74.656 1 70.979 70.479 71.479 -3.6764 0 0 0 0.23749 1 14113 14113 0.12286 0 1 + 49745 21344 33099 33120 48788 48788 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21734619140625 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 79.593 1 75.789 75.289 76.289 -3.8048 0 0 0 0.23749 1 15102 15102 0.12286 0 1 + 49746 21344 33099 33120 48789 48789 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2110900878906 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 79.984 1 76.18 75.68 76.68 -3.8048 0 0 0 0.23749 1 15178 15178 0.12286 0 1 + 49747 21344 33099 33120 48790 48790 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.209716796875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 100.66 1 96.361 95.861 96.861 -4.297 0 0 0 0.23749 1 19256 19256 0.12286 0 1 + 49748 21344 33099 33120 48791 48791 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21087646484375 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 101.29 1 96.991 96.491 97.491 -4.297 0 0 0 0.21486 1 19381 19381 2.5775 0 1 + 49749 21344 33099 33120 48792 48792 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.20440673828125 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 62.21 1 58.97 58.47 59.47 -3.2395 0 0 0 0.21486 1 11660 11660 2.5775 0 1 + 49750 21344 33099 33120 48793 48793 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.213134765625 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 63.295 1 60.039 59.539 60.539 -3.2567 0 0 0 0.23749 1 11875 11875 0.13829 0.015425 1 + 49751 21344 33099 33120 48794 48794 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2120056152344 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 65.07 1 61.787 61.287 62.287 -3.2832 0 0 0 0.23749 1 12224 12224 0.12286 0 1 + 49752 21344 33099 33120 48795 48795 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2099304199219 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 65.861 1 62.578 62.078 63.078 -3.2832 0 0 0 0.23749 1 12387 12387 0.12286 0 1 + 49753 21344 33099 33120 48796 48796 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2099914550781 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 68.455 1 65.065 64.565 65.565 -3.3903 0 0 0 0.23749 1 12923 12923 0.12286 0 1 + 49754 21344 33099 33120 48797 48797 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2123107910156 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 72.768 1 69.229 68.729 69.729 -3.5385 0 0 0 0.23749 1 13797 13797 0.12286 0 1 + 49755 21344 33099 33120 48798 48798 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.20916748046875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 95.856 1 91.975 91.475 92.475 -3.881 0 0 0 0.23749 1 18396 18396 0.12286 0 1 + 49756 21344 33099 33120 48799 48799 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.20916748046875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 95.865 1 91.984 91.484 92.484 -3.881 0 0 0 0.21486 1 18397 18397 2.5775 0 1 + 49757 21344 33099 33120 48800 48800 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2113037109375 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 97.984 1 94.064 93.564 94.564 -3.9194 0 0 0 0.2396 1 18806 18806 0.12286 0.11459 1 + 49758 21344 33099 33120 48801 48801 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2104187011719 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 115.37 1 111.06 110.56 111.56 -4.3136 0 0 0 0.23749 1 22211 22211 0.12286 0 1 + 49759 21344 33099 33120 48802 48802 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2111511230469 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 119.15 1 114.74 114.24 115.24 -4.4088 0 0 0 0.2396 1 22931 22931 0.12286 0.11459 1 + 49760 21344 33099 33120 48803 48803 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2104187011719 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 119.48 1 115.02 114.52 115.52 -4.467 0 0 0 0.23749 1 23002 23002 0.12286 0 1 + 49761 21344 33099 33120 48804 48804 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.211181640625 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 123.92 1 119.32 118.82 119.82 -4.5926 0 0 0 0.23749 1 23848 23848 0.12286 0 1 + 49762 21344 33099 33120 48805 48805 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2100524902344 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 135.06 1 130.23 129.73 130.73 -4.8307 0 0 0 0.23749 1 26003 26003 0.12286 0 1 + 49763 21344 33099 33120 48806 48806 -0.024761260455534284 VGQGGRGM 8 Unmodified _VGQGGRGM_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2109375 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 140.43 1 135.57 135.07 136.07 -4.8678 0 0 0 0.23749 1 27078 27078 0.12286 0 1 + 49764 21344 33099 33120 48807 48807 -0.024761260455534284 VGQGHAEN 8 Unmodified _VGQGHAEN_ 0 0 0 nc|ENSG00000175356|Q9NQ36-3|SCUBE2;SCUBE2|p.N754Kfs*2|1|0.22|ENSG00000175356|chr11:9029954-9029955|-/T|frameshift_variant;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2 nc|ENSG00000175356|Q9NQ36-3|SCUBE2 nc|ENSG00000175356|Q9NQ36-3|SCUBE2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3694458007812 1 811.369306 810.36203 0.49233 0.00039946 -0.19745 -0.00016021 0.29488 0.00023925 811.3685189495891 174.25 0.10814 174.25 174.17 174.27 0 4 2 2 0 0 0 8448 1 36065 36065 0 0 1 7877800 49765 6404 33100 33121 48808 48808 -0.05073677898712958 VGQHHHPALP 10 Unmodified _VGQHHHPALP_ 0 0 0 ENST00000588870.1_1_17:40811874-40817754:+|nuORF ENST00000588870.1_1_17:40811874-40817754:+|nuORF ENST00000588870.1_1_17:40811874-40817754:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.1667175292969 3 364.86143 1091.56246 0.89706 0.0003273 0.4822 0.00017594 1.3793 0.00050324 364.86154729864546 26.115 0.61423 24.333 23.937 24.552 -1.7821 63 17 6 0 0 0 0.47483 1 4625 4625 0.26539 0.26539 1 2485600 49766 11576 33101 33122 48809 48809 0.020342164887324543 VGQHHHPALP 10 Unmodified _VGQHHHPALP_ 0 0 0 ENST00000588870.1_1_17:40811874-40817754:+|nuORF ENST00000588870.1_1_17:40811874-40817754:+|nuORF ENST00000588870.1_1_17:40811874-40817754:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 364.86143 1091.56246 0.1145 4.1777E-05 1.2212 0.00044556 1.3357 0.00048733 364.861861204397 25.87 0.62178 24.235 23.995 24.616 -1.6347 -0.049129 0.00042269 NaN 0.26539 50 17 5 NaN NaN NaN NaN 0 NaN NaN 0 2094200 49767 11576 33101 33122 0.020342164887324543 VGQIIAKRLP 10 Unmodified _VGQIIAKRLP_ 0 0 0 nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;MROH1|p.P1048Qfs*9|1|0.21|ENSG00000179832|chr8:144248894-144248894|C/-|frameshift_variant;ENSG00000179832|ENST00000326134|MROH1 nc|ENSG00000179832|Q8NDA8-2|MROH1;ENSG00000179832|ENST00000326134|MROH1 nc|ENSG00000179832|Q8NDA8-2|MROH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.773681640625 2 547.855858 1093.69716 NaN NaN NaN NaN NaN NaN NaN 158.28 1 158.28 157.78 158.78 0 0 0 0 2.8426 1 31778 31778 0 0 1 49768 10979;6645 33102 33123 48810 48810 0.15406276910653105 VGQIIAKRLP 10 Unmodified _VGQIIAKRLP_ 0 0 0 nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;MROH1|p.P1048Qfs*9|1|0.21|ENSG00000179832|chr8:144248894-144248894|C/-|frameshift_variant;ENSG00000179832|ENST00000326134|MROH1 nc|ENSG00000179832|Q8NDA8-2|MROH1;ENSG00000179832|ENST00000326134|MROH1 nc|ENSG00000179832|Q8NDA8-2|MROH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7862548828125 2 547.855858 1093.69716 0.33278 0.00018231 2.6879 0.0014726 3.0207 0.0016549 547.8568452146036 147.19 0.2103 147.19 147.05 147.26 0 7 5 2 0 0 0 1.1344 1 29449 29449 0 0 1 1564400 49769 10979;6645 33102 33123 48811 48811 0.15406276910653105 VGQKFYLD 8 Unmodified _VGQKFYLD_ 0 0 0 ENSG00000175535|ENST00000369221|PNLIP ENSG00000175535|ENST00000369221|PNLIP ENSG00000175535|ENST00000369221|PNLIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1747131347656 3 323.839521 968.496732 -0.5692 -0.00018433 -0.63311 -0.00020503 -1.2023 -0.00038936 323.83855232385275 15.115 0.31371 15.115 14.914 15.227 0 10 8 2 0 0 0 0.88811 1 2303 2303 0.45834 0 1 245740 49770 6418 33103 33124 48812 48812 0.011223825231695628 VGQKIIGP 8 Unmodified _VGQKIIGP_ 0 0 0 REV__nc|ENSG00000100626|Q8N428-2|GALNT16 REV__nc|ENSG00000100626|Q8N428-2|GALNT16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 406.2543640136719 2 406.255446 810.496338 NaN NaN NaN NaN NaN NaN NaN 40.856 1 40.856 40.356 41.356 0 0 0 0 0.21486 1 7608 7608 2.8892 0.31174 1 + 49771 14729 33104 33125 48813 48813 0.08351007593989834 VGQKMKRISVQ 11 Unmodified _VGQKMKRISVQ_ 0 0 0 SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25274658203125 3 425.251818 1272.73363 NaN NaN NaN NaN NaN NaN NaN 12.369 1 11.24 10.74 11.74 -1.1293 0 0 0 0.23698 1 1511 1511 0.50596 0.051438 1 49772 25787 33105 33126 48814 48814 0.10816785745055313 VGQKPDLP 8 Unmodified _VGQKPDLP_ 0 0 0 nc|ENSG00000095637|Q9BX66-12|SORBS1 nc|ENSG00000095637|Q9BX66-12|SORBS1 nc|ENSG00000095637|Q9BX66-12|SORBS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.7322082519531 2 427.242535 852.470518 0.041649 1.7794E-05 -0.36366 -0.00015537 -0.32201 -0.00013758 427.2423516212788 37.87 0.4147 35.428 35.18 35.594 -2.4419 24 11 3 0 0 0 0.88646 1 6752 6752 0.62683 0 1 3776900 49773 12251 33106 33127 48815 48815 0.03838113351696393 VGQKQVIYF 9 Unmodified _VGQKQVIYF_ 0 0 0 REV__tr|U7T6L2|U7T6L2_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00284PE=4SV=1 REV__tr|U7T6L2|U7T6L2_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00284PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2703857421875 2 541.305667 1080.59678 NaN NaN NaN NaN NaN NaN NaN 159.92 1 154.67 154.17 155.17 -5.2526 0 0 0 0.19634 1 31033 31033 0.073264 0 1 + 49774 25448 33107 33128 48816 48816 0.059706198569983826 VGQKRWYRG 9 Unmodified _VGQKRWYRG_ 0 0 0 ENST00000309575.4_1_3:142838724-142839039:+|nuORF ENST00000309575.4_1_3:142838724-142839039:+|nuORF ENST00000309575.4_1_3:142838724-142839039:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3209838867188 2 575.317432 1148.62031 -0.67279 -0.00038707 1.3332 0.00076703 0.66043 0.00037996 575.3180581107837 12.267 0.1764 11.257 11.172 11.348 -1.0098 8 4 3 0 0 0 0.79297 1 1699 1699 2.0598 0.40713 1 2988600 49775 8633 33108 33129 48817 48817 0.051944784141596756 VGQKTGAT 8 Unmodified _VGQKTGAT_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2118835449219 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 144.12 1 139.05 138.55 139.55 -5.0671 0 0 0 0.23749 1 27790 27790 0.12286 0 1 49776 7651 33109 33130 48818 48818 0.018129672835243582 VGQKTGAT 8 Unmodified _VGQKTGAT_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2095031738281 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 59.972 1 56.749 56.249 57.249 -3.2237 0 0 0 0.23487 1 11212 11212 0.12286 0 1 49777 7651 33109 33130 48819 48819 0.018129672835243582 VGQLLTQHDL 10 Unmodified _VGQLLTQHDL_ 0 0 0 REV__ENSG00000158863|ENST00000289921|FHIP2B REV__ENSG00000158863|ENST00000289921|FHIP2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20831298828125 3 375.208384 1122.60332 -0.79251 -0.00029736 0.75122 0.00028186 -0.041297 -1.5495E-05 375.20856638250314 45.415 0.34857 42.549 42.362 42.711 -2.8666 17 9 2 0 0 0 0.53264 1 8273 8273 0 0 1 671810 + 49778 17351 33110 33131 48820 48820 0.04692513017721467 VGQLPQSP 8 Unmodified _VGQLPQSP_ 0 0 0 ENST00000339560.9_1_19:14048664-14049262:-|nuORF ENST00000339560.9_1_19:14048664-14049262:-|nuORF ENST00000339560.9_1_19:14048664-14049262:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 413.2082824707031 2 413.226885 824.439217 NaN NaN NaN NaN NaN NaN NaN 48.844 1 45.838 45.338 46.338 -3.0068 0 0 0 0.21486 1 8946 8946 5.7604 0 1 49779 8840 33111 33132 48821 48821 0.019975403176204054 VGQLPVFR 8 Unmodified _VGQLPVFR_ 0 0 0 ENST00000474481.1_1_1:1425808-1431194:+|nuORF ENST00000474481.1_1_1:1425808-1431194:+|nuORF ENST00000474481.1_1_1:1425808-1431194:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2383728027344 2 458.27417 914.533787 NaN NaN NaN NaN NaN NaN NaN 113.52 1 109.25 108.75 109.75 -4.2725 0 0 0 0.21486 1 21863 21863 5.2307 0 1 49780 10257 33112 33133 48822 48822 0.07310098859613845 VGQNLHKE 8 Unmodified _VGQNLHKE_ 0 0 0 REV__EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant REV__EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.8916931152344 3 308.83477 923.482479 -0.45573 -0.00014074 0.5456 0.0001685 0.089873 2.7756E-05 308.83488912369995 30.389 0.91039 30.389 29.849 30.759 0 39 25 2 0 0 0 0.89879 1 5358 5358 0.063987 0.034705 1 2369800 + 49781 15467 33113 33134 48823 48823 0.01767730094888975 VGQNLHKE 8 Unmodified _VGQNLHKE_ 0 0 0 REV__EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant REV__EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 308.83477 923.482479 -0.12031 -3.7155E-05 0.16966 5.2396E-05 0.049349 1.5241E-05 308.83475362784446 32.485 0.9894 30.255 29.691 30.68 -2.2305 -0.059788 -5.9064E-05 NaN 0.063987 49 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1502500 + 49782 15467 33113 33134 0.01767730094888975 VGQNLHKE 8 Unmodified _VGQNLHKE_ 0 0 0 REV__EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant REV__EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 308.83477 923.482479 0.26521 8.1905E-05 -0.085343 -2.6357E-05 0.17986 5.5548E-05 308.83466967727395 32.336 0.94552 30.309 29.764 30.709 -2.0264 -0.0051721 -0.00029532 NaN 0.063987 62 26 3 NaN NaN NaN NaN 0 NaN NaN 0 1474300 + 49783 15467 33113 33134 0.01767730094888975 VGQNLHKE 8 Unmodified _VGQNLHKE_ 0 0 0 REV__EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant REV__EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 308.83477 923.482479 -0.23343 -7.2091E-05 0.26008 8.0321E-05 0.026649 8.2302E-06 308.83480181876655 32.453 1.1467 30.305 29.795 30.942 -2.1483 -0.0094056 2.4712E-05 NaN 0.063987 63 32 3 NaN NaN NaN NaN 0 NaN NaN 0 1427500 + 49784 15467 33113 33134 0.01767730094888975 VGQNYKLK 8 Unmodified _VGQNYKLK_ 0 0 0 REV__PLCH1|p.Q1461Sfs*24|1|0.37|ENSG00000114805|chr3:155481669-155481669|G/-|frameshift_variant REV__PLCH1|p.Q1461Sfs*24|1|0.37|ENSG00000114805|chr3:155481669-155481669|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1860656738281 3 317.187032 948.539266 NaN NaN NaN NaN NaN NaN NaN 91.605 1 91.605 91.105 92.105 0 0 0 0 0.21486 1 17906 17906 0.45834 0 1 + 49785 15388 33114 33135 48824 48824 0.06293777651410437 VGQPDTPA 8 Unmodified _VGQPDTPA_ 0 0 0 REV__ENSG00000204450|ENST00000533122|TRIM64 REV__ENSG00000204450|ENST00000533122|TRIM64 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3870849609375 1 784.383559 783.376283 -0.11716 -9.1897E-05 0.94025 0.00073752 0.82309 0.00064562 784.3842379832024 24.189 0.58942 22.336 22.12 22.71 -1.8534 34 16 3 0 0 0 0.83982 1 3993 3993 2.5775 0.27475 1 2856700 + 49786 19537 33115 33136 48825 48825 -0.024070254704383842 VGQPEKKE 8 Unmodified _VGQPEKKE_ 0 0 0 REV__TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant REV__TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22601318359375 2 457.750724 913.486896 0.54784 0.00025077 0.034882 1.5967E-05 0.58272 0.00026674 457.7506579691153 22.541 0.58454 21.036 20.63 21.215 -1.5045 22 16 2 0 0 0 8448 1 3880 3880 0 0 1 176270 + 49787 14913 33116 33137 48826 48826 0.026691945178072274 VGQPWMCEET 10 Unmodified _VGQPWMCEET_ 0 0 0 REV__nc|ENSG00000121775|Q9GZU3-3|TMEM39B REV__nc|ENSG00000121775|Q9GZU3-3|TMEM39B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.263916015625 2 590.244092 1178.47363 NaN NaN NaN NaN NaN NaN NaN 113.7 1 113.7 113.2 114.2 0 0 0 0 2.8426 1 22358 22358 0.043787 0 1 + 49788 24019 33117 33138 48827 48827 -0.10846747648110977 VGQQPGARTLP 11 Unmodified _VGQQPGARTLP_ 0 0 0 REV__YARS|p.N526Tfs*129|1|0.37|ENSG00000134684|chr1:32775993-32775993|C/-|frameshift_variant REV__YARS|p.N526Tfs*129|1|0.37|ENSG00000134684|chr1:32775993-32775993|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.212158203125 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 89.851 1 86.074 85.574 86.574 -3.7779 0 0 0 0.23103 1 17194 17194 7.4771 2.7611 1 + 49789 25550 33118 33139 48828 48828 0.05815335111856257 VGQRPTQS 8 Unmodified _VGQRPTQS_ 0 0 0 REV__ENSG00000124466|ENST00000244333|LYPD3 REV__ENSG00000124466|ENST00000244333|LYPD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.229736328125 2 436.732866 871.451179 0.40576 0.00017721 0.32434 0.00014165 0.7301 0.00031886 436.7326379495933 21.842 0.4649 20.368 20.195 20.66 -1.4742 19 12 2 0 0 0 8448 1 3761 3761 0 0 1 1142000 + 49790 15778 33119 33140 48829 48829 0.010311570608109832 VGQRRARP 8 Unmodified _VGQRRARP_ 0 0 0 REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.31317138671875 3 313.85802 938.552231 NaN NaN NaN NaN NaN NaN NaN 22.966 1 21.413 20.913 21.913 -1.5532 0 0 0 0.21486 1 3945 3945 0.45834 0 1 + 49791 16390 33120 33141 48830 48830 0.0804965355416698 VGQRRARPF 9 Unmodified _VGQRRARPF_ 0 0 0 REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant REV__FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7935791015625 2 543.817599 1085.62064 NaN NaN NaN NaN NaN NaN NaN 157.07 1 157.07 156.57 157.57 0 0 0 0 0.23508 1 31520 31520 7.9102 0.62092 1 + 49792 16390 33121 33142 48831 48831 0.08125898134017007 VGQRRWRRV 9 Unmodified _VGQRRWRRV_ 0 0 0 REV__ENSG00000169710|ENST00000306749|FASN REV__ENSG00000169710|ENST00000306749|FASN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.2854919433594 3 404.911007 1211.71119 NaN NaN NaN NaN NaN NaN NaN 13.452 1 13.452 12.952 13.952 0 0 0 0 0.23508 1 1943 1943 0.26902 0.1097 1 + 49793 18116 33122 33143 48832 48832 0.11380367182300688 VGQRSQLRVV 10 Unmodified _VGQRSQLRVV_ 0 0 0 nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1;nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1;ENSG00000137571|ENST00000260126|SLCO5A1 nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1 nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2166748046875 3 381.231523 1140.67274 -0.13655 -5.2058E-05 -0.24866 -9.4797E-05 -0.38521 -0.00014686 381.23158698569 21.491 0.20365 21.491 21.362 21.566 0 9 5 2 0 0 0 0.53099 1 3608 3608 0.043787 0 1 429760 49794 4093 33123 33144 48833 48833 0.10803016757108708 VGQSAAAI 8 Unmodified _VGQSAAAI_ 0 0 0 ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3 ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENST00000502426.5_1_17:48736553-48755440:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 717.310791015625 1 716.39373 715.386454 0.71689 0.00051358 -4.336 -0.0031063 -3.6191 -0.0025927 716.3871740307676 167.5 0.10715 162.61 162.53 162.64 -4.8916 4 2 2 0 0 0 8448 1 32951 32951 0 0 1 13341000 49795 2497 33124 33145 48834 48834 0.01737582254793324 VGQSGPSRQ 9 Unmodified _VGQSGPSRQ_ 0 0 0 REV__ENST00000502960.1_1_5:140027066-140027270:-|nuORF REV__ENST00000502960.1_1_5:140027066-140027270:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2373962402344 2 458.235773 914.456993 NaN NaN NaN NaN NaN NaN NaN 14.865 1 13.654 13.154 14.154 -1.2106 0 0 0 0.23508 1 2005 2005 1.8442 0.19162 1 + 49796 16079 33125 33146 48835 48835 -0.0036574442752908 VGQSRTPPP 9 Unmodified _VGQSRTPPP_ 0 0 0 REV__HMX3|p.P23Tfs*24|1|0.79|ENSG00000188620|chr10:123136111-123136112|CC/-|frameshift_variant REV__HMX3|p.P23Tfs*24|1|0.79|ENSG00000188620|chr10:123136111-123136112|CC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 469.2343444824219 2 469.756341 937.498129 0.030856 1.4495E-05 2.3028 0.0010818 2.3337 0.0010963 469.75637285178254 57.369 1.0837 54.117 53.274 54.358 -3.2517 44 30 2 0 0 0 0.60888 1 10573 10573 0.40827 0.335 1 2207000 + 49797 23637 33126 33147 48836 48836 0.026880166119553905 VGQSRTPPP 9 Unmodified _VGQSRTPPP_ 0 0 0 REV__HMX3|p.P23Tfs*24|1|0.79|ENSG00000188620|chr10:123136111-123136112|CC/-|frameshift_variant REV__HMX3|p.P23Tfs*24|1|0.79|ENSG00000188620|chr10:123136111-123136112|CC/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 469.756341 937.498129 -0.060495 -2.8418E-05 2.3663 0.0011116 2.3058 0.0010831 469.7563728980999 54.402 1.3417 54.402 53.924 55.266 0 0.22775 5.7556E-05 NaN 0.40827 51 37 2 NaN NaN NaN NaN 0 NaN NaN 0 2586800 + 49798 23637 33126 33147 0.026880166119553905 VGQSRTPPP 9 Unmodified _VGQSRTPPP_ 0 0 0 REV__HMX3|p.P23Tfs*24|1|0.79|ENSG00000188620|chr10:123136111-123136112|CC/-|frameshift_variant REV__HMX3|p.P23Tfs*24|1|0.79|ENSG00000188620|chr10:123136111-123136112|CC/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 469.756341 937.498129 -0.17625 -8.2797E-05 2.4933 0.0011713 2.3171 0.0010885 469.7563809097338 56.912 1.2275 54.017 53.751 54.979 -2.8944 -0.15683 0.00017695 NaN 0.40827 46 34 2 NaN NaN NaN NaN 0 NaN NaN 0 2537100 + 49799 23637 33126 33147 0.026880166119553905 VGQSRTPPP 9 Unmodified _VGQSRTPPP_ 0 0 0 REV__HMX3|p.P23Tfs*24|1|0.79|ENSG00000188620|chr10:123136111-123136112|CC/-|frameshift_variant REV__HMX3|p.P23Tfs*24|1|0.79|ENSG00000188620|chr10:123136111-123136112|CC/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 469.756341 937.498129 0.05996 2.8167E-05 2.1132 0.00099267 2.1731 0.0010208 469.7563375965321 57.336 1.8183 54.16 53.545 55.364 -3.1761 -0.014165 -0.00018023 NaN 0.40827 66 51 2 NaN NaN NaN NaN 0 NaN NaN 0 2434600 + 49800 23637 33126 33147 0.026880166119553905 VGQVAATVE 9 Unmodified _VGQVAATVE_ 0 0 0 DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.R811H|1|0.22|ENSG00000181381|chr4:168420343-168420343|C/T|missense_variant;ENST00000504793.1_1_4:169337857-169343051:-|nuORF;DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22802734375 2 437.23745 872.460347 0.21359 9.3391E-05 -0.42673 -0.00018658 -0.21314 -9.3192E-05 437.2371535869417 86.126 1.1554 82.176 81.771 82.926 -3.9503 44 32 2 0 0 0 0.5464 1 16507 16507 0.073264 0 1 1968500 49801 808 33127 33148 48837 48837 0.019015056264720442 VGQVAATVE 9 Unmodified _VGQVAATVE_ 0 0 0 DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.R811H|1|0.22|ENSG00000181381|chr4:168420343-168420343|C/T|missense_variant;ENST00000504793.1_1_4:169337857-169343051:-|nuORF;DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2355651855469 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 65.338 1 62.055 61.555 62.555 -3.2832 0 0 0 0.23508 1 12281 12281 7.9102 1.5561 1 49802 808 33127 33148 48838 48838 0.019015056264720442 VGQVAATVE 9 Unmodified _VGQVAATVE_ 0 0 0 DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.R811H|1|0.22|ENSG00000181381|chr4:168420343-168420343|C/T|missense_variant;ENST00000504793.1_1_4:169337857-169343051:-|nuORF;DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23577880859375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 86.676 1 82.947 82.447 83.447 -3.7289 0 0 0 0.23508 1 16575 16575 11.64 0 1 49803 808 33127 33148 48839 48839 0.019015056264720442 VGQYNQPE 8 Unmodified _VGQYNQPE_ 0 0 0 TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant;nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20;TCF20|p.R570Dfs*37|1|0.61|ENSG00000100207|chr22:42213599-42213599|G/-|frameshift_variant;TCF20|p.G1028Efs*6|1|0.09|ENSG00000100207|chr22:42212223-42212223|C/-|frameshift_variant;TCF20|p.L1388Efs*6|1|0.17|ENSG00000100207|chr22:42211143-42211144|AA/-|frameshift_variant;TCF20|p.L1424Gfs*21|1|0.32|ENSG00000100207|chr22:42211037-42211038|-/TCCT|frameshift_variant;TCF20|p.P1561Lfs*54|1|0.31|ENSG00000100207|chr22:42210624-42210624|G/-|frameshift_variant;TCF20|p.K1579Nfs*36|1|0.18|ENSG00000100207|chr22:42210569-42210569|T/-|frameshift_variant TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1234436035156 3 312.147013 933.41921 NaN NaN NaN NaN NaN NaN NaN 22.463 1 20.674 20.174 21.174 -1.7886 0 0 0 0.21486 1 3569 3569 0.45834 0 1 49804 25826 33128 33149 48840 48840 -0.05016255413011095 VGRAGYLRSP 10 Unmodified _VGRAGYLRSP_ 0 0 0 ENST00000265742.7_1_7:91875669-91875759:+|nuORF ENST00000265742.7_1_7:91875669-91875759:+|nuORF ENST00000265742.7_1_7:91875669-91875759:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 359.2334289550781 3 359.205085 1074.59343 NaN NaN NaN NaN NaN NaN NaN 94.987 1 94.987 94.487 95.487 0 0 0 0 0.22588 1 18605 18605 0.62683 0 1 49805 8365 33129 33150 48841 48841 0.05911369802993249 VGRAMYKL 8 Unmodified _VGRAMYKL_ 0 0 0 REV__PAN2|p.G144V|1|0.21|ENSG00000135473|chr12:56328493-56328493|C/A|missense_variant REV__PAN2|p.G144V|1|0.21|ENSG00000135473|chr12:56328493-56328493|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.18072509765625 3 313.181112 936.521507 NaN NaN NaN NaN NaN NaN NaN 43.42 1 40.691 40.191 41.191 -2.7284 0 0 0 0.21486 1 7837 7837 1.6526 0 1 + 49806 24430 33130 33151 48842 48842 0.05070739124903412 VGRAMYKL 8 Unmodified _VGRAMYKL_ 0 0 0 REV__PAN2|p.G144V|1|0.21|ENSG00000135473|chr12:56328493-56328493|C/A|missense_variant REV__PAN2|p.G144V|1|0.21|ENSG00000135473|chr12:56328493-56328493|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.17987060546875 3 313.181112 936.521507 NaN NaN NaN NaN NaN NaN NaN 46.667 1 43.8 43.3 44.3 -2.8666 0 0 0 0.21486 1 8499 8499 1.6526 0 1 + 49807 24430 33130 33151 48843 48843 0.05070739124903412 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.17578125 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 21.103 1 19.719 19.219 20.219 -1.3847 0 0 0 0.23508 1 3306 3306 2.7352 1.0826 1 + 49808 15671 33131 33152 48844 48844 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.1624450683594 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 34.342 1 32.123 31.623 32.623 -2.219 0 0 0 0.23508 1 6019 6019 2.7352 1.0826 1 + 49809 15671 33131 33152 48845 48845 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.161865234375 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 39.901 1 37.362 36.862 37.862 -2.5398 0 0 0 0.23508 1 7137 7137 2.7352 1.0826 1 + 49810 15671 33131 33152 48846 48846 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.1807861328125 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 41.912 1 39.261 38.761 39.761 -2.651 0 0 0 0.23508 1 7535 7535 2.7352 1.0826 1 + 49811 15671 33131 33152 48847 48847 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.17608642578125 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 18.422 1 16.907 16.407 17.407 -1.5148 0 0 0 0.23508 1 2729 2729 1.1933 0 1 + 49812 15671 33131 33152 48848 48848 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.16204833984375 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 22.341 1 20.553 20.053 21.053 -1.7886 0 0 0 0.23508 1 3542 3542 2.7352 0 1 + 49813 15671 33131 33152 48849 48849 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1552734375 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 23.972 1 22.183 21.683 22.683 -1.7886 0 0 0 0.23508 1 3881 3881 1.1933 0 1 + 49814 15671 33131 33152 48850 48850 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1789855957031 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 24.109 1 22.256 21.756 22.756 -1.8534 0 0 0 0.23508 1 3908 3908 1.1933 0 1 + 49815 15671 33131 33152 48851 48851 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.17608642578125 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 27.92 1 25.924 25.424 26.424 -1.9962 0 0 0 0.23508 1 4690 4690 2.7352 1.0826 1 + 49816 15671 33131 33152 48852 48852 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.16259765625 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 29.83 1 27.756 27.256 28.256 -2.0743 0 0 0 0.23508 1 5085 5085 2.7352 1.0826 1 + 49817 15671 33131 33152 48853 48853 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.17938232421875 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 29.868 1 27.794 27.294 28.294 -2.0743 0 0 0 0.23508 1 5093 5093 1.1933 0.735 1 + 49818 15671 33131 33152 48854 48854 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1625671386719 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 30.265 1 28.191 27.691 28.691 -2.0743 0 0 0 0.23508 1 5175 5175 2.7352 1.0826 1 + 49819 15671 33131 33152 48855 48855 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1617736816406 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 36.327 1 34.05 33.55 34.55 -2.2766 0 0 0 0.23508 1 6408 6408 2.7352 1.0826 1 + 49820 15671 33131 33152 48856 48856 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.16900634765625 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 37.642 1 35.304 34.804 35.804 -2.3375 0 0 0 0.23508 1 6670 6670 2.7352 1.0826 1 + 49821 15671 33131 33152 48857 48857 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1626281738281 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 40.611 1 38.122 37.622 38.622 -2.4896 0 0 0 0.23508 1 7275 7275 2.7352 0 1 + 49822 15671 33131 33152 48858 48858 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1800537109375 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 43.665 1 40.918 40.418 41.418 -2.7475 0 0 0 0.23508 1 7890 7890 2.7352 0 1 + 49823 15671 33131 33152 48859 48859 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1620178222656 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 44.554 1 41.806 41.306 42.306 -2.7475 0 0 0 0.23508 1 8066 8066 2.7352 1.0826 1 + 49824 15671 33131 33152 48860 48860 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.180908203125 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 44.6 1 41.853 41.353 42.353 -2.7475 0 0 0 0.23508 1 8076 8076 2.7352 1.0826 1 + 49825 15671 33131 33152 48861 48861 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1622314453125 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 47.238 1 44.288 43.788 44.788 -2.9499 0 0 0 0.23508 1 8619 8619 2.7352 1.0826 1 + 49826 15671 33131 33152 48862 48862 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.16241455078125 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 52.112 1 49.06 48.56 49.56 -3.0517 0 0 0 0.23508 1 9614 9614 1.1933 0.41681 1 + 49827 15671 33131 33152 48863 48863 -0.004279761419979877 VGRAPSYTS 9 Unmodified _VGRAPSYTS_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 REV__nc|ENSG00000121940|Q96S66-4|CLCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1624450683594 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 53.33 1 50.235 49.735 50.735 -3.0954 0 0 0 0.23508 1 9855 9855 2.7352 0 1 + 49828 15671 33131 33152 48864 48864 -0.004279761419979877 VGRARGIW 8 Unmodified _VGRARGIW_ 0 0 0 ENST00000525333.5_1_11:834595-834778:+|nuORF ENST00000525333.5_1_11:834595-834778:+|nuORF ENST00000525333.5_1_11:834595-834778:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.0133972167969 3 305.515483 913.524619 -0.58021 -0.00017726 0.18885 5.7696E-05 -0.39136 -0.00011957 305.5156443076293 15.624 1.2488 15.624 15.33 16.578 0 100 35 6 0 0 0 1.028 1 2518 2518 0 0 1 119980000 49829 10893 33132 33153 48865 48865 0.06439750293941415 VGRARGIW 8 Unmodified _VGRARGIW_ 0 0 0 ENST00000525333.5_1_11:834595-834778:+|nuORF ENST00000525333.5_1_11:834595-834778:+|nuORF ENST00000525333.5_1_11:834595-834778:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 305.515483 913.524619 -0.61228 -0.00018706 0.30966 9.4606E-05 -0.30262 -9.2454E-05 305.5156343780357 16.8 0.8051 15.585 15.32 16.125 -1.2159 0.013843 5.3441E-05 NaN 0 68 22 5 NaN NaN NaN NaN 0 NaN NaN 0 75801000 49830 10893 33132 33153 0.06439750293941415 VGRARGIW 8 Unmodified _VGRARGIW_ 0 0 0 ENST00000525333.5_1_11:834595-834778:+|nuORF ENST00000525333.5_1_11:834595-834778:+|nuORF ENST00000525333.5_1_11:834595-834778:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 305.515483 913.524619 -0.48178 -0.00014719 0.23549 7.1945E-05 -0.2463 -7.5247E-05 305.5155829088399 16.775 0.89832 15.503 15.246 16.144 -1.2722 -0.067529 -1.4542E-05 NaN 0 77 25 5 NaN NaN NaN NaN 0 NaN NaN 0 59842000 49831 10893 33132 33153 0.06439750293941415 VGRARLAW 8 Unmodified _VGRARLAW_ 0 0 0 REV__ENST00000598755.1_1_19:52104480-52104837:+|nuORF REV__ENST00000598755.1_1_19:52104480-52104837:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16510009765625 3 310.187366 927.540269 -0.30355 -9.4156E-05 -1.6442 -0.00051001 -1.9477 -0.00060417 310.1868511775535 18.582 0.31226 17.271 17.142 17.454 -1.3109 13 8 2 0 0 0 0.88047 1 3053 3053 0.45834 0 1 603730 + 49832 23398 33133 33154 48866 48866 0.07360036810962356 VGRARLAW 8 Unmodified _VGRARLAW_ 0 0 0 REV__ENST00000598755.1_1_19:52104480-52104837:+|nuORF REV__ENST00000598755.1_1_19:52104480-52104837:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647644042969 3 310.187366 927.540269 NaN NaN NaN NaN NaN NaN NaN 18.814 1 17.179 16.679 17.679 -1.6351 0 0 0 0.21486 1 2806 2806 0.45834 0 1 + 49833 23398 33133 33154 48867 48867 0.07360036810962356 VGRATRVA 8 Unmodified _VGRATRVA_ 0 0 0 REV__ENST00000299320.9_1_16:4784593-4784695:+|nuORF REV__ENST00000299320.9_1_16:4784593-4784695:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2530212402344 2 415.253769 828.492984 NaN NaN NaN NaN NaN NaN NaN 25.184 1 23.649 23.149 24.149 -1.5342 0 0 0 0.21486 1 4129 4129 2.8892 0 1 + 49834 20391 33134 33155 48868 48868 0.07187757539975337 VGRCQVDP 8 Unmodified _VGRCQVDP_ 0 0 0 REV__ENST00000395415.2_1_7:63391808-63391940:+|nuORF REV__ENST00000395415.2_1_7:63391808-63391940:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2154541015625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 67.639 1 64.53 64.03 65.03 -3.1086 0 0 0 0.21486 1 13121 13121 5.2307 2.3415 1 + 49835 21261 33135 33156 48869 48869 -0.023875877026057424 VGRDARVR 8 Unmodified _VGRDARVR_ 0 0 0 ENST00000367330.5_1_1:201123337-201123409:-|nuORF ENST00000367330.5_1_1:201123337-201123409:-|nuORF ENST00000367330.5_1_1:201123337-201123409:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700134277344 3 310.186025 927.536246 NaN NaN NaN NaN NaN NaN NaN 21.37 1 21.37 20.87 21.87 0 0 0 0 0.21486 1 3573 3573 1.8442 1.3859 1 49836 9066 33136 33157 48870 48870 0.06957947317266644 VGRELHSL 8 Unmodified _VGRELHSL_ 0 0 0 REV__nc|ENSG00000137265|Q15306-2|IRF4 REV__nc|ENSG00000137265|Q15306-2|IRF4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.03955078125 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 46.953 1 44.112 43.612 44.612 -2.8409 0 0 0 0.21486 1 8861 8861 0.45834 0 1 + 49837 16383 33137 33158 48871 48871 0.044843204745689036 VGRELHSL 8 Unmodified _VGRELHSL_ 0 0 0 REV__nc|ENSG00000137265|Q15306-2|IRF4 REV__nc|ENSG00000137265|Q15306-2|IRF4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.0396423339844 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 49.714 1 46.833 46.333 47.333 -2.8811 0 0 0 0.21486 1 9420 9420 0.45834 0 1 + 49838 16383 33137 33158 48872 48872 0.044843204745689036 VGRELHSL 8 Unmodified _VGRELHSL_ 0 0 0 REV__nc|ENSG00000137265|Q15306-2|IRF4 REV__nc|ENSG00000137265|Q15306-2|IRF4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.0399475097656 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 39.266 1 36.824 36.324 37.324 -2.4419 0 0 0 0.21486 1 7011 7011 0.45834 0 1 + 49839 16383 33137 33158 48873 48873 0.044843204745689036 VGRELHSL 8 Unmodified _VGRELHSL_ 0 0 0 REV__nc|ENSG00000137265|Q15306-2|IRF4 REV__nc|ENSG00000137265|Q15306-2|IRF4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.03955078125 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 33.856 1 31.64 31.14 32.14 -2.2158 0 0 0 0.21486 1 5916 5916 0.45834 0 1 + 49840 16383 33137 33158 48874 48874 0.044843204745689036 VGRELHSL 8 Unmodified _VGRELHSL_ 0 0 0 REV__nc|ENSG00000137265|Q15306-2|IRF4 REV__nc|ENSG00000137265|Q15306-2|IRF4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.1751708984375 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 39.145 1 36.74 36.24 37.24 -2.4049 0 0 0 0.21486 1 6982 6982 0.45834 0 1 + 49841 16383 33137 33158 48875 48875 0.044843204745689036 VGRELRVT 8 Unmodified _VGRELRVT_ 0 0 0 REV__ENST00000514308.3_1_4:186425710-186427744:-|nuORF REV__ENST00000514308.3_1_4:186425710-186427744:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2407531738281 2 465.279983 928.545414 0.14022 6.5242E-05 0.22916 0.00010662 0.36938 0.00017186 465.27999040654873 32.589 0.41723 32.589 32.363 32.78 0 19 11 2 0 0 0 0.94768 1 5910 5910 18.146 11.423 1 1120100 + 49842 22576 33138 33159 48876 48876 0.07828295882939074 VGRELRVT 8 Unmodified _VGRELRVT_ 0 0 0 REV__ENST00000514308.3_1_4:186425710-186427744:-|nuORF REV__ENST00000514308.3_1_4:186425710-186427744:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2587890625 2 465.279983 928.545414 -0.27254 -0.00012681 0.48185 0.0002242 0.20931 9.7388E-05 465.2802324732951 34.833 0.3821 32.516 32.293 32.675 -2.3175 19 10 2 0 0 0 0.6095 1 6402 6402 21.537 1.0834 1 1543200 + 49843 22576 33138 33159 48877 48877 0.07828295882939074 VGRERSRAP 9 Unmodified _VGRERSRAP_ 0 0 0 REV__ENST00000547260.5_1_12:49161535-49161745:-|nuORF REV__ENST00000547260.5_1_12:49161535-49161745:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.19537353515625 3 343.196701 1026.56827 NaN NaN NaN NaN NaN NaN NaN 78.102 1 74.638 74.138 75.138 -3.4633 0 0 0 0.23508 1 15251 15251 1.0715 0 1 + 49844 22906 33139 33160 48878 48878 0.056053150004117924 VGRFLLHV 8 Unmodified _VGRFLLHV_ 0 0 0 REV__nc|ENSG00000203711|Q4VX62-2|LINC02901 REV__nc|ENSG00000203711|Q4VX62-2|LINC02901 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.1965026855469 3 314.19575 939.565421 NaN NaN NaN NaN NaN NaN NaN 70.016 1 66.837 66.337 67.337 -3.1796 0 0 0 0.21486 1 13621 13621 0.45834 0 1 + 49845 24236 33140 33161 48879 48879 0.09322091613569228 VGRFLLHV 8 Unmodified _VGRFLLHV_ 0 0 0 REV__nc|ENSG00000203711|Q4VX62-2|LINC02901 REV__nc|ENSG00000203711|Q4VX62-2|LINC02901 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1962585449219 3 314.19575 939.565421 NaN NaN NaN NaN NaN NaN NaN 75.419 1 71.697 71.197 72.197 -3.7227 0 0 0 0.21486 1 14265 14265 0.45834 0 1 + 49846 24236 33140 33161 48880 48880 0.09322091613569228 VGRFLLHV 8 Unmodified _VGRFLLHV_ 0 0 0 REV__nc|ENSG00000203711|Q4VX62-2|LINC02901 REV__nc|ENSG00000203711|Q4VX62-2|LINC02901 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.14483642578125 3 314.19575 939.565421 NaN NaN NaN NaN NaN NaN NaN 62.873 1 59.616 59.116 60.116 -3.2567 0 0 0 0.21486 1 11792 11792 0.45834 0 1 + 49847 24236 33140 33161 48881 48881 0.09322091613569228 VGRFSKGC 8 Unmodified _VGRFSKGC_ 0 0 0 REV__ENSG00000063587|ENST00000650114|ZNF275 REV__ENSG00000063587|ENST00000650114|ZNF275 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.294921875 2 427.22108 852.427607 NaN NaN NaN NaN NaN NaN NaN 14.285 1 13.112 12.612 13.612 -1.173 0 0 0 0.21486 1 1922 1922 2.5775 0 1 + 49848 14160 33141 33162 48882 48882 -0.004509799773586565 VGRFTDRRDQE 11 Unmodified _VGRFTDRRDQE_ 0 0 0 ENST00000330676.7_1_17:1608447-1608651:-|nuORF ENST00000330676.7_1_17:1608447-1608651:-|nuORF ENST00000330676.7_1_17:1608447-1608651:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23211669921875 3 460.232251 1377.67492 NaN NaN NaN NaN NaN NaN NaN 158.64 1 158.64 158.14 159.14 0 0 0 0 0.22632 1 31852 31852 0.026206 0 1 49849 8770 33142 33163 48883 48883 0.0011940070428408944 VGRFTDRRDQE 11 Unmodified _VGRFTDRRDQE_ 0 0 0 ENST00000330676.7_1_17:1608447-1608651:-|nuORF ENST00000330676.7_1_17:1608447-1608651:-|nuORF ENST00000330676.7_1_17:1608447-1608651:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23223876953125 3 460.232251 1377.67492 NaN NaN NaN NaN NaN NaN NaN 159.74 1 154.51 154.01 155.01 -5.2299 0 0 0 0.22632 1 31005 31005 0.094841 0.051054 1 49850 8770 33142 33163 48884 48884 0.0011940070428408944 VGRFTDRRDQE 11 Unmodified _VGRFTDRRDQE_ 0 0 0 ENST00000330676.7_1_17:1608447-1608651:-|nuORF ENST00000330676.7_1_17:1608447-1608651:-|nuORF ENST00000330676.7_1_17:1608447-1608651:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2339782714844 3 460.232251 1377.67492 NaN NaN NaN NaN NaN NaN NaN 24.174 1 22.321 21.821 22.821 -1.8534 0 0 0 0.22632 1 3920 3920 0.026206 0 1 49851 8770 33142 33163 48885 48885 0.0011940070428408944 VGRGAGGG 8 Unmodified _VGRGAGGG_ 0 0 0 SLC25A28|p.G167Afs*22|1|0.72|ENSG00000155287|chr10:99613716-99613716|C/-|frameshift_variant;SLC25A28|p.Q256Rfs*19|1|0.46|ENSG00000155287|chr10:99611178-99611178|G/-|frameshift_variant;ENSG00000155287|ENST00000370495|SLC25A28 SLC25A28|p.G167Afs*22|1|0.72|ENSG00000155287|chr10:99613716-99613716|C/-|frameshift_variant SLC25A28|p.G167Afs*22|1|0.72|ENSG00000155287|chr10:99613716-99613716|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7591552734375 1 630.331799 629.324522 0.75854 0.00047813 2.5149 0.0015852 3.2734 0.0020633 630.3340428509533 175.47 0.13934 170.58 170.53 170.66 -4.8916 5 3 2 0 0 0 0.88047 1 34976 34976 0.79363 0 1 5538700 49852 5041 33143 33164 48886 48886 -0.004967243736587079 VGRGAGGG 8 Unmodified _VGRGAGGG_ 0 0 0 SLC25A28|p.G167Afs*22|1|0.72|ENSG00000155287|chr10:99613716-99613716|C/-|frameshift_variant;SLC25A28|p.Q256Rfs*19|1|0.46|ENSG00000155287|chr10:99611178-99611178|G/-|frameshift_variant;ENSG00000155287|ENST00000370495|SLC25A28 SLC25A28|p.G167Afs*22|1|0.72|ENSG00000155287|chr10:99613716-99613716|C/-|frameshift_variant SLC25A28|p.G167Afs*22|1|0.72|ENSG00000155287|chr10:99613716-99613716|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 630.331799 629.324522 0.42916 0.00027051 3.2403 0.0020425 3.6695 0.002313 630.3341413164683 175.46 0.14462 170.58 170.48 170.63 -4.8845 -0.019916 0.00018174 NaN 0.79363 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 6319400 49853 5041 33143 33164 -0.004967243736587079 VGRGGGGA 8 Unmodified _VGRGGGGA_ 0 0 0 nc|nan|Q9H3H3|C11orf68;ENSG00000175573|ENST00000438576|C11orf68 nc|nan|Q9H3H3|C11orf68 nc|nan|Q9H3H3|C11orf68 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7711181640625 1 630.331799 629.324522 0.3969 0.00025018 -2.1033 -0.0013258 -1.7064 -0.0010756 630.3294009893871 121.34 0.14579 121.34 121.22 121.36 0 5 3 2 0 0 0 0.89951 1 23898 23898 0 0 1 771000 49854 6422 33144 33165 48887 48887 -0.004967243736814453 VGRGLVPR 8 Unmodified _VGRGLVPR_ 0 0 0 REV__ENST00000454486.4_1_15:32828592-32828919:-|nuORF REV__ENST00000454486.4_1_15:32828592-32828919:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.259765625 2 427.271961 852.52937 NaN NaN NaN NaN NaN NaN NaN 13.259 1 12.249 11.749 12.749 -1.0098 0 0 0 0.21486 1 1908 1908 5.2307 0 1 + 49855 21839 33145 33166 48888 48888 0.09720634436700948 VGRGPHGA 8 Unmodified _VGRGPHGA_ 0 0 0 REV__nc|ENSG00000160282|O95954-4|FTCD REV__nc|ENSG00000160282|O95954-4|FTCD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2151794433594 2 375.703912 749.39327 0.061526 2.3116E-05 1.6081 0.00060419 1.6697 0.0006273 375.70433576162947 38.304 0.42337 35.862 35.63 36.054 -2.4419 17 11 2 0 0 0 8448 1 6791 6791 0 0 1 3081000 + 49856 22415 33146 33167 48889 48889 0.008549399260459722 VGRGPPPPP 9 Unmodified _VGRGPPPPP_ 0 0 0 REV__ENSG00000112232|ENST00000281156|KHDRBS2 REV__ENSG00000112232|ENST00000281156|KHDRBS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2320861816406 2 437.250695 872.486836 NaN NaN NaN NaN NaN NaN NaN 39.762 1 37.357 36.857 37.857 -2.4049 0 0 0 0.23048 1 7099 7099 14.582 3.4672 1 + 49857 15286 33147 33168 48890 48890 0.045492393084600735 VGRGQGMG 8 Unmodified _VGRGQGMG_ 0 0 0 REV__ENST00000228027.11_3_11:75479935-75480019:+|nuORF REV__ENST00000228027.11_3_11:75479935-75480019:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.209716796875 2 381.18978 760.365007 NaN NaN NaN NaN NaN NaN NaN 72.565 1 72.565 72.065 73.065 0 0 0 0 0.23711 1 14074 14074 0.12286 0 1 + 49858 20054 33148 33169 48891 48891 -0.024761260455534284 VGRGRDLP 8 Unmodified _VGRGRDLP_ 0 0 0 ENST00000590067.5_1_19:3055942-3056107:-|nuORF ENST00000590067.5_1_19:3055942-3056107:-|nuORF ENST00000590067.5_1_19:3055942-3056107:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 435.23614501953125 2 435.251226 868.487899 NaN NaN NaN NaN NaN NaN NaN 113.26 1 113.26 112.76 113.76 0 0 0 0 0.21486 1 22268 22268 2.8892 0 1 49859 11595 33149 33170 48892 48892 0.048394536773685104 VGRGRPVPP 9 Unmodified _VGRGRPVPP_ 0 0 0 REV__KHDRBS1|p.P336Hfs*4|1|0.41|ENSG00000121774|chr1:32037932-32037932|C/-|frameshift_variant REV__KHDRBS1|p.P336Hfs*4|1|0.41|ENSG00000121774|chr1:32037932-32037932|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.19085693359375 3 312.190888 933.550834 NaN NaN NaN NaN NaN NaN NaN 28.768 1 26.812 26.312 27.312 -1.9561 0 0 0 0.19624 1 5156 5156 0.073264 0 1 + 49860 15666 33150 33171 48893 48893 0.08140019465406567 VGRHQELRDPT 11 Unmodified _VGRHQELRDPT_ 0 0 0 ENST00000485941.2_1_1:21771537-21772570:+|nuORF;ENST00000478653.6_1_1:21771537-21779909:+|nuORF;nc|ENSG00000142794|Q9H094-5|NBPF3;nc|ENSG00000142794|Q9H094-3|NBPF3;ENSG00000142794|ENST00000318249|NBPF3 ENST00000485941.2_1_1:21771537-21772570:+|nuORF ENST00000485941.2_1_1:21771537-21772570:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2313232421875 3 436.565342 1306.6742 -0.023346 -1.0192E-05 -0.38572 -0.00016839 -0.40907 -0.00017859 436.56527631051506 39.629 0.97889 37.187 36.513 37.492 -2.4419 69 27 5 0 0 0 0.81043 1 6979 6979 2.2527 0.32522 1 12351000 49861 4443 33151 33172 48894 48894 0.03312606055237666 VGRHQFGH 8 Unmodified _VGRHQFGH_ 0 0 0 ENST00000400246.5_1_22:32241096-32266721:+|nuORF ENST00000400246.5_1_22:32241096-32266721:+|nuORF ENST00000400246.5_1_22:32241096-32266721:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1714782714844 3 313.163221 936.467832 NaN NaN NaN NaN NaN NaN NaN 19.648 1 18.013 17.513 18.513 -1.6351 0 0 0 0.21486 1 2979 2979 1.8442 0 1 49862 9506 33152 33173 48895 48895 -0.002942972625760376 VGRHSRLW 8 Unmodified _VGRHSRLW_ 0 0 0 REV__AKAP4|p.E702Qfs*5|1|0.05|ENSG00000147081|chrX:50192610-50192611|-/CTTGG|frameshift_variant REV__AKAP4|p.E702Qfs*5|1|0.05|ENSG00000147081|chrX:50192610-50192611|-/CTTGG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0570983886719 3 337.52627 1009.55698 -2.0682 -0.00069808 0.78694 0.00026561 -1.2813 -0.00043247 337.52651755394396 16.979 0.17486 15.465 15.346 15.521 -1.5148 7 4 2 0 0 0 1.0281 1 2423 2423 0.45834 0.45834 1 325500 + 49863 12999 33153 33174 48896 48896 0.05258537696943222 VGRHSRLW 8 Unmodified _VGRHSRLW_ 0 0 0 REV__AKAP4|p.E702Qfs*5|1|0.05|ENSG00000147081|chrX:50192610-50192611|-/CTTGG|frameshift_variant REV__AKAP4|p.E702Qfs*5|1|0.05|ENSG00000147081|chrX:50192610-50192611|-/CTTGG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0571594238281 3 337.52627 1009.55698 -2.1319 -0.00071957 0.77223 0.00026065 -1.3596 -0.00045892 337.5264838777422 16.525 0.31 15.171 15.028 15.338 -1.3534 13 8 2 0 0 0 1.0276 1 2349 2349 1.8442 1.3859 1 263390 + 49864 12999 33153 33174 48897 48897 0.05258537696943222 VGRHYFLELR 10 Unmodified _VGRHYFLELR_ 0 0 0 ENSG00000165152|ENST00000374848|PGAP4 ENSG00000165152|ENST00000374848|PGAP4 ENSG00000165152|ENST00000374848|PGAP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.2621154785156 4 323.183286 1288.70404 -2.1162 -0.00068392 -0.92337 -0.00029842 -3.0396 -0.00098233 323.18289928383376 16.642 0.44372 15.288 15.097 15.541 -1.3534 24 12 4 0 0 0 0.76775 1 2402 2402 0.15932 0 1 636000 49865 5602 33154 33175 48898 48898 0.07123589791194718 VGRIHPIL 8 Unmodified _VGRIHPIL_ 0 0 0 ENST00000372564.7_1_9:131770823-131770958:-|nuORF ENST00000372564.7_1_9:131770823-131770958:-|nuORF ENST00000372564.7_1_9:131770823-131770958:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.1864318847656 3 302.19575 903.565421 NaN NaN NaN NaN NaN NaN NaN 68.994 1 68.994 68.494 69.494 0 0 0 0 0.21486 1 13348 13348 1.8442 0 1 49866 9182 33155 33176 48899 48899 0.10978091613560537 VGRIRLAVR 9 Unmodified _VGRIRLAVR_ 0 0 0 REV__ENSG00000124557|ENST00000684113|BTN1A1 REV__ENSG00000124557|ENST00000684113|BTN1A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 347.2259216308594 3 347.233087 1038.67743 NaN NaN NaN NaN NaN NaN NaN 97.883 1 97.883 97.383 98.383 0 0 0 0 0.23508 1 19185 19185 0.26902 0 1 + 49867 15783 33156 33177 48900 48900 0.15963945690532455 VGRKAVLSS 9 Unmodified _VGRKAVLSS_ 0 0 0 REV__ENST00000529306.5_1_11:502127-506619:-|nuORF REV__ENST00000529306.5_1_11:502127-506619:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.1697692871094 3 306.190665 915.550165 NaN NaN NaN NaN NaN NaN NaN 71.55 1 68.083 67.583 68.583 -3.467 0 0 0 0.23508 1 13561 13561 1.1933 0.12188 1 + 49868 22742 33157 33178 48901 48901 0.08901180025713984 VGRKFPVTKKT 11 Unmodified _VGRKFPVTKKT_ 0 0 0 REV__ENSG00000133454|ENST00000335473|MYO18B REV__ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.77099609375 2 630.892972 1259.77139 NaN NaN NaN NaN NaN NaN NaN 72.386 1 69.076 68.576 69.576 -3.3107 0 0 0 0.22632 1 14108 14108 0.00056442 0 1 + 49869 16167 33158 33179 48902 48902 0.15189620002138327 VGRKGMFPWMT 11 Unmodified _VGRKGMFPWMT_ 0 0 0 REV__ENST00000519868.1_1_5:169502602-169506159:+|nuORF REV__ENST00000519868.1_1_5:169502602-169506159:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2212219238281 3 437.222983 1308.64712 NaN NaN NaN NaN NaN NaN NaN 71.225 1 67.758 67.258 68.258 -3.467 0 0 0 0.22632 1 13497 13497 0.026206 0 1 + 49870 22627 33159 33180 48903 48903 0.0051408291883490165 VGRKGVITV 9 Unmodified _VGRKGVITV_ 0 0 0 ENST00000388967.3_1_3:36809324-36810203:-|nuORF;ENST00000429127.2_1_12:8167969-8168583:+|nuORF;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1 ENST00000388967.3_1_3:36809324-36810203:-|nuORF ENST00000388967.3_1_3:36809324-36810203:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647033691406 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 16.217 1 15.001 14.501 15.501 -1.2159 0 0 0 0.19623 1 2542 2542 0.073264 0.073264 1 49871 9350 33160 33181 48904 48904 0.1198605692242154 VGRKHARKLVA 11 Unmodified _VGRKHARKLVA_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 412.2685241699219 3 412.266679 1233.77821 NaN NaN NaN NaN NaN NaN NaN 150.23 1 145.11 144.61 145.61 -5.1204 0 0 0 0.23698 1 29113 29113 0.50596 0.23694 1 + 49872 16048 33161 33182 48905 48905 0.17066977673403017 VGRKHLKE 8 Unmodified _VGRKHLKE_ 0 0 0 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.85101318359375 3 322.866293 965.577048 NaN NaN NaN NaN NaN NaN NaN 18.861 1 18.861 18.361 19.361 0 0 0 0 0.21486 1 3057 3057 0.45834 0 1 + 49873 24197 33162 33183 48906 48906 0.09288288636889774 VGRKHLKE 8 Unmodified _VGRKHLKE_ 0 0 0 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.8559265136719 3 322.866293 965.577048 NaN NaN NaN NaN NaN NaN NaN 19.538 1 19.538 19.038 20.038 0 0 0 0 0.21486 1 3199 3199 0.45834 0 1 + 49874 24197 33162 33183 48907 48907 0.09288288636889774 VGRKHLKE 8 Unmodified _VGRKHLKE_ 0 0 0 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.8768615722656 3 322.866293 965.577048 NaN NaN NaN NaN NaN NaN NaN 20.311 1 20.311 19.811 20.811 0 0 0 0 0.21486 1 3357 3357 0.45834 0 1 + 49875 24197 33162 33183 48908 48908 0.09288288636889774 VGRKHLKE 8 Unmodified _VGRKHLKE_ 0 0 0 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.8669738769531 3 322.866293 965.577048 NaN NaN NaN NaN NaN NaN NaN 24.857 1 24.857 24.357 25.357 0 0 0 0 0.21486 1 4292 4292 0.45834 0 1 + 49876 24197 33162 33183 48909 48909 0.09288288636889774 VGRKHLKE 8 Unmodified _VGRKHLKE_ 0 0 0 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.8775329589844 3 322.866293 965.577048 NaN NaN NaN NaN NaN NaN NaN 24.992 1 24.992 24.492 25.492 0 0 0 0 0.21486 1 4320 4320 0.45834 0 1 + 49877 24197 33162 33183 48910 48910 0.09288288636889774 VGRKHLKE 8 Unmodified _VGRKHLKE_ 0 0 0 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.8462829589844 3 322.866293 965.577048 NaN NaN NaN NaN NaN NaN NaN 30.137 1 30.137 29.637 30.637 0 0 0 0 0.21486 1 5409 5409 0.45834 0 1 + 49878 24197 33162 33183 48911 48911 0.09288288636889774 VGRKHLKEK 9 Unmodified _VGRKHLKEK_ 0 0 0 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7764892578125 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 145.73 1 140.62 140.12 141.12 -5.1108 0 0 0 0.19624 1 28170 28170 0 0 1 + 49879 24197 33163 33184 48912 48912 0.12892222108075657 VGRKHLKEK 9 Unmodified _VGRKHLKEK_ 0 0 0 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 REV__nc|ENSG00000180881|Q9BXY5|CAPS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7786865234375 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 133.01 1 128.21 127.71 128.71 -4.799 0 0 0 0.19624 1 25600 25600 0 0 1 + 49880 24197 33163 33184 48913 48913 0.12892222108075657 VGRKLGLL 8 Unmodified _VGRKLGLL_ 0 0 0 nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B;ENST00000589644.1_1_19:38799650-38799980:-|nuORF;YIF1B|p.R149Afs*49|1|0.4|ENSG00000167645|chr19:38309015-38309015|G/-|frameshift_variant;ENST00000585563.5_1_19:38798235-38806107:-|nuORF;nc|ENSG00000167645|Q5BJH7-4|YIF1B;nc|ENSG00000167645|Q5BJH7-5|YIF1B nc|ENSG00000167645|Q5BJH7-2|YIF1B nc|ENSG00000167645|Q5BJH7-2|YIF1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 428.2937927246094 2 428.292362 854.570172 NaN NaN NaN NaN NaN NaN NaN 161.59 1 161.59 161.09 162.09 0 0 0 0 0.21486 1 32456 32456 0.79363 0 1 49881 5829 33164 33185 48914 48914 0.13706975756326756 VGRKLLFS 8 Unmodified _VGRKLLFS_ 0 0 0 ENST00000369409.8_1_1:120279827-120279866:+|nuORF ENST00000369409.8_1_1:120279827-120279866:+|nuORF ENST00000369409.8_1_1:120279827-120279866:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2364196777344 2 460.28982 918.565087 NaN NaN NaN NaN NaN NaN NaN 14.537 1 13.327 12.827 13.827 -1.2106 0 0 0 0.21486 1 1934 1934 0.79363 0 1 49882 9119 33165 33186 48915 48915 0.10254671893710565 VGRKLLLSCY 10 Unmodified _VGRKLLLSCY_ 0 0 0 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3213500976562 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 66.785 1 63.677 63.177 64.177 -3.1086 0 0 0 2.8426 1 12948 12948 0.043787 0 1 49883 7036 33166 33187 48916 48916 0.08394924422009353 VGRKPPAP 8 Unmodified _VGRKPPAP_ 0 0 0 REV__ENST00000560078.1_1_15:41100333-41100738:+|nuORF REV__ENST00000560078.1_1_15:41100333-41100738:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 411.13311767578125 2 411.253237 820.491922 -0.69516 -0.00028589 -1.2798 -0.00052633 -1.975 -0.00081222 411.25344595185794 12.632 0.17367 11.503 11.421 11.595 -1.1293 6 4 2 0 0 0 0.88047 2 1549 1549;1555 0.79363 0 1 99118 + 49884 23036 33167 33188 48917;48918 48917 0.07449543171071582 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3869018554688 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 101.34 1 101.34 100.84 101.84 0 0 0 0 0.22632 1 19890 19890 0 0 1 49885 3804 33168 33189 48919 48919 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3873291015625 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 117.07 1 117.07 116.57 117.57 0 0 0 0 0.22632 1 23060 23060 0 0 1 49886 3804 33168 33189 48920 48920 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3833618164062 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 158.28 1 158.28 157.78 158.78 0 0 0 0 0.22632 1 31777 31777 0 0 1 49887 3804 33168 33189 48921 48921 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.386962890625 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 159.65 1 159.65 159.15 160.15 0 0 0 0 0.22632 1 32056 32056 0 0 1 49888 3804 33168 33189 48922 48922 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3828735351562 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 164.94 1 164.94 164.44 165.44 0 0 0 0 0.22632 1 33413 33413 0 0 1 49889 3804 33168 33189 48923 48923 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3880004882812 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 127.38 1 122.76 122.26 123.26 -4.6172 0 0 0 0.22632 1 25121 25121 0 0 1 49890 3804 33168 33189 48924 48924 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3837890625 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 145.44 1 140.77 140.27 141.27 -4.6694 0 0 0 0.22632 1 28831 28831 0 0 1 49891 3804 33168 33189 48925 48925 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3837890625 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 165.59 1 160.8 160.3 161.3 -4.7898 0 0 0 0.22632 1 33176 33176 0 0 1 49892 3804 33168 33189 48926 48926 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.38232421875 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 69.244 1 65.707 65.207 66.207 -3.5362 0 0 0 0.22632 1 13037 13037 0 0 1 49893 3804 33168 33189 48927 48927 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3873291015625 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 133.5 1 128.63 128.13 129.13 -4.8726 0 0 0 0.22632 1 25651 25651 0 0 1 49894 3804 33168 33189 48928 48928 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.387451171875 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 173.73 1 168.83 168.33 169.33 -4.8977 0 0 0 0.22632 1 34497 34497 0 0 1 49895 3804 33168 33189 48929 48929 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.38720703125 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 141.04 1 136.17 135.67 136.67 -4.8678 0 0 0 0.22632 1 27211 27211 0 0 1 49896 3804 33168 33189 48930 48930 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.38818359375 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 143.32 1 138.42 137.92 138.92 -4.8982 0 0 0 0.22632 1 27665 27665 0 0 1 49897 3804 33168 33189 48931 48931 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3856201171875 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 157.4 1 152.13 151.63 152.63 -5.2712 0 0 0 0.22632 1 30533 30533 0 0 1 49898 3804 33168 33189 48932 48932 0.033355904936342995 VGRKQFMRFEW 11 Unmodified _VGRKQFMRFEW_ 0 0 0 ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;nc|ENSG00000133454|Q8IUG5-2|MYO18B;MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant ENSG00000133454|ENST00000335473|MYO18B ENSG00000133454|ENST00000335473|MYO18B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3865966796875 2 742.384988 1482.75542 NaN NaN NaN NaN NaN NaN NaN 162.41 1 157.22 156.72 157.72 -5.1878 0 0 0 0.22632 1 31533 31533 0 0 1 49899 3804 33168 33189 48933 48933 0.033355904936342995 VGRKQRLPL 9 Unmodified _VGRKQRLPL_ 0 0 0 REV__TSSK6|p.R222L|1|0.16|ENSG00000178093|chr19:19514763-19514763|C/A|missense_variant REV__TSSK6|p.R222L|1|0.16|ENSG00000178093|chr19:19514763-19514763|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2709350585938 2 533.845825 1065.6771 0.368 0.00019646 4.1973 0.0022407 4.5653 0.0024372 534.3515034540303 145.6 0.17082 140.63 140.56 140.73 -4.9699 6 4 2 0 0 0 0.65257 1 28180 28180 0 0 1 1309500 + 49900 25494 33169 33190 48934 48934 0.1468852597070054 VGRKRKRPR 9 Unmodified _VGRKRKRPR_ 0 0 0 REV__ENST00000604872.5_1_4:153456099-153456309:-|nuORF REV__ENST00000604872.5_1_4:153456099-153456309:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 577.156005859375 2 576.881065 1151.74758 NaN NaN NaN NaN NaN NaN NaN 167.35 1 162.56 162.06 163.06 -4.7898 0 0 0 0.19624 1 33740 33740 0 0 1 + 49901 23446 33170 33191 48935 48935 0.17777244079024968 VGRKRYHY 8 Unmodified _VGRKRYHY_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 81.21 1 81.21 80.71 81.71 0 0 0 0 0.21486 1 15813 15813 1.8442 0.25196 1 + 49902 14067 33171 33192 48936 48936 0.047508068684237514 VGRKRYHY 8 Unmodified _VGRKRYHY_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 80.408 1 76.568 76.068 77.068 -3.8392 0 0 0 0.21486 1 15260 15260 1.8442 0.19162 1 + 49903 14067 33171 33192 48937 48937 0.047508068684237514 VGRKRYHY 8 Unmodified _VGRKRYHY_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20147705078125 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 114.35 1 109.79 109.29 110.29 -4.555 0 0 0 0.21486 1 21956 21956 1.8442 0.10196 1 + 49904 14067 33171 33192 48938 48938 0.047508068684237514 VGRKRYHY 8 Unmodified _VGRKRYHY_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201904296875 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 113.66 1 109.39 108.89 109.89 -4.2725 0 0 0 0.21486 1 21889 21889 1.8442 0.36234 1 + 49905 14067 33171 33192 48939 48939 0.047508068684237514 VGRKTLWE 8 Unmodified _VGRKTLWE_ 0 0 0 ENST00000548263.5_1_12:54105730-54106093:-|nuORF ENST00000548263.5_1_12:54105730-54106093:-|nuORF ENST00000548263.5_1_12:54105730-54106093:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 329.9963073730469 3 330.190665 987.550165 NaN NaN NaN NaN NaN NaN NaN 141.76 1 136.77 136.27 137.27 -4.9877 0 0 0 0.21486 1 27304 27304 3.9444 0 1 49906 11149 33172 33193 48940 48940 0.0558918002569726 VGRKVKEL 8 Unmodified _VGRKVKEL_ 0 0 0 REV__ENSG00000160469|ENST00000309383|BRSK1;REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1694641113281 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 62.837 1 62.837 62.337 63.337 0 0 0 0 0.2396 1 12073 12073 0 0 1 + 49907 13211;17422 33173 33194 48941 48941 0.11986056922410171 VGRKVKEL 8 Unmodified _VGRKVKEL_ 0 0 0 REV__ENSG00000160469|ENST00000309383|BRSK1;REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650695800781 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 11.184 1 10.28 9.7804 10.78 -0.90401 0 0 0 0.2396 1 1462 1462 0.0082765 0 1 + 49908 13211;17422 33173 33194 48942 48942 0.11986056922410171 VGRKVKEL 8 Unmodified _VGRKVKEL_ 0 0 0 REV__ENSG00000160469|ENST00000309383|BRSK1;REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1656799316406 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 16.07 1 14.848 14.348 15.348 -1.2219 0 0 0 0.2396 1 2290 2290 0 0 1 + 49909 13211;17422 33173 33194 48943 48943 0.11986056922410171 VGRKVKEL 8 Unmodified _VGRKVKEL_ 0 0 0 REV__ENSG00000160469|ENST00000309383|BRSK1;REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1697998046875 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 13.345 1 12.224 11.724 12.724 -1.1206 0 0 0 0.21486 1 1678 1678 0.45834 0 1 + 49910 13211;17422 33173 33194 48944 48944 0.11986056922410171 VGRKVKEL 8 Unmodified _VGRKVKEL_ 0 0 0 REV__ENSG00000160469|ENST00000309383|BRSK1;REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1706237792969 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 13.676 1 12.466 11.966 12.966 -1.2106 0 0 0 0.21486 1 1751 1751 0.45834 0 1 + 49911 13211;17422 33173 33194 48945 48945 0.11986056922410171 VGRKVKEL 8 Unmodified _VGRKVKEL_ 0 0 0 REV__ENSG00000160469|ENST00000309383|BRSK1;REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 15.182 1 13.972 13.472 14.472 -1.2106 0 0 0 0.21486 1 2073 2073 0.45834 0 1 + 49912 13211;17422 33173 33194 48946 48946 0.11986056922410171 VGRKVKEL 8 Unmodified _VGRKVKEL_ 0 0 0 REV__ENSG00000160469|ENST00000309383|BRSK1;REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649475097656 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 15.94 1 14.587 14.087 15.087 -1.3534 0 0 0 0.2396 1 2232 2232 0 0 1 + 49913 13211;17422 33173 33194 48947 48947 0.11986056922410171 VGRKVKEL 8 Unmodified _VGRKVKEL_ 0 0 0 REV__ENSG00000160469|ENST00000309383|BRSK1;REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant REV__BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1645202636719 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 16.215 1 14.861 14.361 15.361 -1.3534 0 0 0 0.21486 1 2287 2287 0.45834 0 1 + 49914 13211;17422 33173 33194 48948 48948 0.11986056922410171 VGRLFARH 8 Unmodified _VGRLFARH_ 0 0 0 ENST00000422989.5_1_19:44099473-44100177:-|nuORF ENST00000422989.5_1_19:44099473-44100177:-|nuORF ENST00000422989.5_1_19:44099473-44100177:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.21112060546875 3 319.190999 954.551168 NaN NaN NaN NaN NaN NaN NaN 129.12 1 124.3 123.8 124.8 -4.817 0 0 0 0.21486 1 24786 24786 0.45834 0 1 49915 9685 33174 33195 48949 48949 0.0720743918526523 VGRLFIEL 8 Unmodified _VGRLFIEL_ 0 0 0 REV__ENSG00000140481|ENST00000398814|CCDC33 REV__ENSG00000140481|ENST00000398814|CCDC33 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1602478027344 3 316.195527 945.564752 -1.9823 -0.0006268 -1.0642 -0.0003365 -3.0465 -0.0009633 316.1951754166758 17.508 0.27405 15.993 15.874 16.148 -1.5148 10 7 2 0 0 0 1.0281 1 2531 2531 0.45834 0 1 203860 + 49916 16578 33175 33196 48950 48950 0.08979252173821806 VGRLHCPF 8 Unmodified _VGRLHCPF_ 0 0 0 ENST00000424014.6_1_12:124106324-124106408:-|nuORF ENST00000424014.6_1_12:124106324-124106408:-|nuORF ENST00000424014.6_1_12:124106324-124106408:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 100.26 1 96.1 95.6 96.6 -4.1594 0 0 0 0.23837 1 19703 19703 0.12286 0 1 49917 9697 33176 33197 48951 48951 0.008252992936149894 VGRLHCPF 8 Unmodified _VGRLHCPF_ 0 0 0 ENST00000424014.6_1_12:124106324-124106408:-|nuORF ENST00000424014.6_1_12:124106324-124106408:-|nuORF ENST00000424014.6_1_12:124106324-124106408:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 115.8 1 111.22 110.72 111.72 -4.5815 0 0 0 0.23837 1 22231 22231 0.13829 0 1 49918 9697 33176 33197 48952 48952 0.008252992936149894 VGRLHTDL 8 Unmodified _VGRLHTDL_ 0 0 0 CDH8|p.I96Nfs*8|2|0.17|ENSG00000150394|chr16:61901439-61901440|-/T|frameshift_variant;CDH8|p.L504Yfs*74|1|0.3|ENSG00000150394|chr16:61727119-61727119|A/-|frameshift_variant;ENSG00000150394|ENST00000577390|CDH8 CDH8|p.I96Nfs*8|2|0.17|ENSG00000150394|chr16:61901439-61901440|-/T|frameshift_variant CDH8|p.I96Nfs*8|2|0.17|ENSG00000150394|chr16:61901439-61901440|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.0399475097656 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 50.603 1 47.722 47.222 48.222 -2.8811 0 0 0 0.21486 1 9602 9602 1.6526 0.17072 1 49919 465 33177 33198 48953 48953 0.04484320474546166 VGRLILFIR 9 Unmodified _VGRLILFIR_ 0 0 0 REV__ENSG00000176273|ENST00000427197|SLC35G1 REV__ENSG00000176273|ENST00000427197|SLC35G1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7778930664062 2 543.860944 1085.70733 NaN NaN NaN NaN NaN NaN NaN 119.01 1 114.39 113.89 114.89 -4.6106 0 0 0 0.19624 1 22835 22835 0 0 1 + 49920 18505 33178 33199 48954 48954 0.16790884635861403 VGRLILFIR 9 Unmodified _VGRLILFIR_ 0 0 0 REV__ENSG00000176273|ENST00000427197|SLC35G1 REV__ENSG00000176273|ENST00000427197|SLC35G1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7879638671875 2 543.860944 1085.70733 NaN NaN NaN NaN NaN NaN NaN 135.7 1 130.8 130.3 131.3 -4.8951 0 0 0 0.19624 1 26070 26070 0 0 1 + 49921 18505 33178 33199 48955 48955 0.16790884635861403 VGRLLLPVLL 10 Unmodified _VGRLLLPVLL_ 0 0 0 GJC3|p.E47Sfs*53|1|0.07|ENSG00000176402|chr7:99929482-99929482|C/-|frameshift_variant;GJC3|p.E47Dfs*53|1|0.07|ENSG00000176402|chr7:99929480-99929480|C/-|frameshift_variant;ENSG00000176402|ENST00000312891|GJC3 GJC3|p.E47Sfs*53|1|0.07|ENSG00000176402|chr7:99929482-99929482|C/-|frameshift_variant GJC3|p.E47Sfs*53|1|0.07|ENSG00000176402|chr7:99929482-99929482|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 546.3994140625 2 546.878802 1091.74305 0.33535 0.0001834 2.2888 0.0012517 2.6242 0.0014351 547.3821187972572 151.15 0.38635 151.15 150.92 151.3 0 14 10 2 0 0 0 1.1344 1 30273 30273 0 0 1 4265000 49922 6463 33179 33200 48956 48956 0.20084922092883062 VGRLLPLGL 9 Unmodified _VGRLLPLGL_ 0 0 0 REV__ENST00000320389.11_1_2:241737101-241737215:-|nuORF REV__ENST00000320389.11_1_2:241737101-241737215:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.2119445800781 3 313.211289 936.612037 NaN NaN NaN NaN NaN NaN NaN 59.725 1 56.792 56.292 57.292 -2.9333 0 0 0 0.23508 1 11487 11487 2.7352 1.6637 1 + 49923 20542 33180 33201 48957 48957 0.14119531444839595 VGRLLSLALLP 11 Unmodified _VGRLLSLALLP_ 0 0 0 ENST00000303577.6_1_2:70315818-70315902:+|nuORF ENST00000303577.6_1_2:70315818-70315902:+|nuORF ENST00000303577.6_1_2:70315818-70315902:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3191528320312 2 576.379166 1150.74378 0.31631 0.00018232 2.5057 0.0014443 2.8221 0.0016266 576.8830271229098 145.14 0.17296 140.2 140.14 140.31 -4.9445 5 4 2 0 0 0 0.89038 1 28078 28078 0.026206 0 1 1972600 49924 8588 33181 33202 48958 48958 0.174437167419228 VGRLNHSFN 9 Unmodified _VGRLNHSFN_ 0 0 0 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.27490234375 2 522.27269 1042.53083 NaN NaN NaN NaN NaN NaN NaN 101.36 1 97.201 96.701 97.701 -4.1594 0 0 0 0.19652 1 19922 19922 0.073264 0 1 + 49925 17614 33182 33203 48959 48959 0.01126223734809173 VGRLNIRPR 9 Unmodified _VGRLNIRPR_ 0 0 0 REV__nc|ENSG00000172830|Q8TE77-3|SSH3 REV__nc|ENSG00000172830|Q8TE77-3|SSH3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.277587890625 2 540.841074 1079.66759 0.11792 6.3776E-05 2.0226 0.0010939 2.1405 0.0011577 540.8415846938072 130.85 0.17532 126.02 125.96 126.13 -4.8355 5 4 2 0 0 0 0.64208 1 25114 25114 0.073264 0.071882 1 1178700 + 49926 18312 33183 33204 48960 48960 0.13094757685189506 VGRLPRLP 8 Unmodified _VGRLPRLP_ 0 0 0 ENST00000547344.5_1_12:58159078-58160873:-|nuORF;ENST00000228606.8_1_12:58158304-58160873:-|nuORF ENST00000547344.5_1_12:58159078-58160873:-|nuORF ENST00000547344.5_1_12:58159078-58160873:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 303.1993103027344 3 303.199383 906.57632 NaN NaN NaN NaN NaN NaN NaN 103.15 1 98.968 98.468 99.468 -4.1861 0 0 0 0.21486 1 20277 20277 0.45834 0 1 49927 8148 33184 33205 48961 48961 0.119294939878273 VGRLPRLPRV 10 Unmodified _VGRLPRLPRV_ 0 0 0 ENST00000547344.5_1_12:58159078-58160873:-|nuORF;ENST00000228606.8_1_12:58158304-58160873:-|nuORF ENST00000547344.5_1_12:58159078-58160873:-|nuORF ENST00000547344.5_1_12:58159078-58160873:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 388.25433349609375 3 388.255891 1161.74584 NaN NaN NaN NaN NaN NaN NaN 89.501 1 89.501 89.001 90.001 0 0 0 0 0.22588 1 17479 17479 0.15932 0 1 49928 8148 33185 33206 48962 48962 0.17144190270369108 VGRLPRLPRV 10 Unmodified _VGRLPRLPRV_ 0 0 0 ENST00000547344.5_1_12:58159078-58160873:-|nuORF;ENST00000228606.8_1_12:58158304-58160873:-|nuORF ENST00000547344.5_1_12:58159078-58160873:-|nuORF ENST00000547344.5_1_12:58159078-58160873:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 581.8801879882812 2 581.880199 1161.74584 NaN NaN NaN NaN NaN NaN NaN 10.541 1 9.4479 8.9479 9.9479 -1.0936 0 0 0 0.22588 1 1204 1204 0 0 1 49929 8148 33185 33206 48963 48963 0.17144190270369108 VGRLQFRFE 9 Unmodified _VGRLQFRFE_ 0 0 0 REV__nc|ENSG00000151835|Q9NZJ4-2|SACS REV__nc|ENSG00000151835|Q9NZJ4-2|SACS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3204345703125 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 55.635 1 52.752 52.252 53.252 -2.8837 0 0 0 0.19624 1 10652 10652 0 0 1 + 49930 17086 33186 33207 48964 48964 0.055439428370846144 VGRLRLQK 8 Unmodified _VGRLRLQK_ 0 0 0 nc|ENSG00000187144|Q7Z572-2|SPATA21;ENSG00000187144|ENST00000335496|SPATA21 nc|ENSG00000187144|Q7Z572-2|SPATA21 nc|ENSG00000187144|Q7Z572-2|SPATA21 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1761169433594 3 323.882054 968.624333 NaN NaN NaN NaN NaN NaN NaN 23.705 1 22.152 21.652 22.652 -1.5532 0 0 0 0.2396 1 4102 4102 0 0 1 49931 7099 33187 33208 48965 48965 0.13876567907880144 VGRLRLQKLP 10 Unmodified _VGRLRLQKLP_ 0 0 0 nc|ENSG00000187144|Q7Z572-2|SPATA21;ENSG00000187144|ENST00000335496|SPATA21 nc|ENSG00000187144|Q7Z572-2|SPATA21 nc|ENSG00000187144|Q7Z572-2|SPATA21 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.266357421875 2 590.387857 1178.76116 NaN NaN NaN NaN NaN NaN NaN 137 1 137 136.5 137.5 0 0 0 0 2.8426 1 27158 27158 0 0 1 49932 7099 33188 33209 48966 48966 0.17893057067590235 VGRLRLQKLP 10 Unmodified _VGRLRLQKLP_ 0 0 0 nc|ENSG00000187144|Q7Z572-2|SPATA21;ENSG00000187144|ENST00000335496|SPATA21 nc|ENSG00000187144|Q7Z572-2|SPATA21 nc|ENSG00000187144|Q7Z572-2|SPATA21 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2759399414062 2 590.387857 1178.76116 NaN NaN NaN NaN NaN NaN NaN 109.41 1 104.96 104.46 105.46 -4.4518 0 0 0 0.22588 1 21000 21000 1.8442 0 1 49933 7099 33188 33209 48967 48967 0.17893057067590235 VGRLRRLLPL 10 Unmodified _VGRLRRLLPL_ 0 0 0 ENST00000569187.5_1_16:81015453-81040468:-|nuORF ENST00000569187.5_1_16:81015453-81040468:-|nuORF ENST00000569187.5_1_16:81015453-81040468:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 597.1500854492188 2 596.903674 1191.7928 NaN NaN NaN NaN NaN NaN NaN 28.316 1 26.36 25.86 26.86 -1.9561 0 0 0 0.22588 1 5061 5061 1.8442 0.36234 1 49934 11405 33189 33210 48968 48968 0.20457049821561668 VGRLTGSTE 9 Unmodified _VGRLTGSTE_ 0 0 0 nc|ENSG00000141519|Q4G0X9-2|CCDC40;nc|ENSG00000141519|Q4G0X9-5|CCDC40;nc|ENSG00000141519|Q4G0X9-4|CCDC40;CCDC40|p.K1058Nfs*21|1|0.06|ENSG00000141519|chr17:80097395-80097395|A/-|frameshift_variant;ENSG00000141519|ENST00000397545|CCDC40;CCDC40|p.I914Tfs*84|1|0.32|ENSG00000141519|chr17:80089792-80089793|-/C|frameshift_variant nc|ENSG00000141519|Q4G0X9-2|CCDC40;CCDC40|p.I914Tfs*84|1|0.32|ENSG00000141519|chr17:80089792-80089793|-/C|frameshift_variant nc|ENSG00000141519|Q4G0X9-2|CCDC40 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2467346191406 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 162.28 1 157.14 156.64 157.64 -5.1438 0 0 0 0.23508 1 31523 31523 7.2892 0 1 49935 12359;420 33190 33211 48969 48969 0.014560065124214816 VGRLVIVAL 9 Unmodified _VGRLVIVAL_ 0 0 0 nc|ENSG00000154025|A0PJK1-4|SLC5A10;nc|ENSG00000154025|A0PJK1-5|SLC5A10;nc|ENSG00000154025|A0PJK1-2|SLC5A10;ENSG00000154025|ENST00000395645|SLC5A10 nc|ENSG00000154025|A0PJK1-4|SLC5A10 nc|ENSG00000154025|A0PJK1-4|SLC5A10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.8819274902344 3 313.883172 938.627687 NaN NaN NaN NaN NaN NaN NaN 9.491 1 8.6967 8.1967 9.1967 -0.79424 0 0 0 0.23508 1 1100 1100 0.26902 0 1 49936 12388 33191 33212 48970 48970 0.15591817961876586 VGRMNEEC 8 Unmodified _VGRMNEEC_ 0 0 0 REV__ENSG00000167658|ENST00000309311|EEF2 REV__ENSG00000167658|ENST00000309311|EEF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1324462890625 3 313.133722 936.379336 NaN NaN NaN NaN NaN NaN NaN 22.215 1 20.494 19.994 20.994 -1.7211 0 0 0 0.21486 1 3517 3517 0.45834 0 1 + 49937 17953 33192 33213 48971 48971 -0.09139841679575511 VGRMRGIIHL 10 Unmodified _VGRMRGIIHL_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3300170898438 2 576.345135 1150.67572 NaN NaN NaN NaN NaN NaN NaN 149.86 1 144.74 144.24 145.24 -5.1204 0 0 0 2.8426 1 29040 29040 0.0013812 0.0008168 1 49938 5126;11929 33193 33214 48972 48972 0.1064056861030167 VGRMRQLEKK 10 Unmodified _VGRMRQLEKK_ 0 0 0 SH3BP5|p.M191V|1|0.21|ENSG00000131370|chr3:15262214-15262214|T/C|missense_variant SH3BP5|p.M191V|1|0.21|ENSG00000131370|chr3:15262214-15262214|T/C|missense_variant SH3BP5|p.M191V|1|0.21|ENSG00000131370|chr3:15262214-15262214|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7667236328125 2 622.866431 1243.71831 NaN NaN NaN NaN NaN NaN NaN 167.1 1 162.21 161.71 162.71 -4.8916 0 0 0 2.8426 1 32815 32815 0.0013812 0 1 49939 25661 33194 33215 48973 48973 0.10619918947850238 VGRNAARPT 9 Unmodified _VGRNAARPT_ 0 0 0 ENST00000393229.3_1_9:135117391-135118432:+|nuORF ENST00000393229.3_1_9:135117391-135118432:+|nuORF ENST00000393229.3_1_9:135117391-135118432:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.49725341796875 3 314.51403 940.520262 NaN NaN NaN NaN NaN NaN NaN 15.67 1 15.67 15.17 16.17 0 0 0 0 0.1964 1 2400 2400 0 0 1 49940 9389 33195 33216 48974 48974 0.047622410803683124 VGRNKSDW 8 Unmodified _VGRNKSDW_ 0 0 0 REV__HECW2|p.R1017Gfs*19|1|0.33|ENSG00000138411|chr2:196278614-196278614|G/-|frameshift_variant REV__HECW2|p.R1017Gfs*19|1|0.33|ENSG00000138411|chr2:196278614-196278614|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.16583251953125 3 321.166519 960.477728 -0.47015 -0.000151 -0.52793 -0.00016955 -0.99808 -0.00032055 321.1662091867773 33.225 0.73512 33.225 33.025 33.76 0 28 20 2 0 0 0 0.88047 1 6142 6142 0.45834 0 1 1067100 + 49941 16459 33196 33217 48975 48975 -0.004091540478725619 VGRNKSDW 8 Unmodified _VGRNKSDW_ 0 0 0 REV__HECW2|p.R1017Gfs*19|1|0.33|ENSG00000138411|chr2:196278614-196278614|G/-|frameshift_variant REV__HECW2|p.R1017Gfs*19|1|0.33|ENSG00000138411|chr2:196278614-196278614|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 321.166519 960.477728 -0.54501 -0.00017504 -0.06695 -2.1502E-05 -0.61196 -0.00019654 321.16636708899125 35.245 0.59938 32.851 32.491 33.091 -2.3938 -0.12555 0.00023325 NaN 0.45834 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 900760 + 49942 16459 33196 33217 -0.004091540478725619 VGRNKSDW 8 Unmodified _VGRNKSDW_ 0 0 0 REV__HECW2|p.R1017Gfs*19|1|0.33|ENSG00000138411|chr2:196278614-196278614|G/-|frameshift_variant REV__HECW2|p.R1017Gfs*19|1|0.33|ENSG00000138411|chr2:196278614-196278614|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 321.166519 960.477728 0.17064 5.4804E-05 -0.57254 -0.00018388 -0.4019 -0.00012908 321.16622038457473 35.196 0.66246 32.944 32.392 33.055 -2.2527 -0.033082 -0.00025389 NaN 0.45834 24 18 2 NaN NaN NaN NaN 0 NaN NaN 0 961070 + 49943 16459 33196 33217 -0.004091540478725619 VGRNKSDW 8 Unmodified _VGRNKSDW_ 0 0 0 REV__HECW2|p.R1017Gfs*19|1|0.33|ENSG00000138411|chr2:196278614-196278614|G/-|frameshift_variant REV__HECW2|p.R1017Gfs*19|1|0.33|ENSG00000138411|chr2:196278614-196278614|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 321.166519 960.477728 -0.35486 -0.00011397 -0.069893 -2.2447E-05 -0.42475 -0.00013642 321.16638653770667 35.164 0.58538 32.887 32.52 33.106 -2.2766 -0.089479 0.00023041 NaN 0.45834 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1130600 + 49944 16459 33196 33217 -0.004091540478725619 VGRPARTLI 9 Unmodified _VGRPARTLI_ 0 0 0 COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant;COL15A1|p.E1069Rfs*84|1|0.36|ENSG00000204291|chr9:99056264-99056264|A/-|frameshift_variant;ENST00000471477.1_1_9:101706343-101748400:+|nuORF;COL15A1|p.A345Lfs*13|1|0.27|ENSG00000204291|chr9:99000916-99000916|G/-|frameshift_variant;COL15A1|p.P575Lfs*23|1|0.03|ENSG00000204291|chr9:99022112-99022112|C/-|frameshift_variant;COL15A1|p.K708Rfs*44|1|0.31|ENSG00000204291|chr9:99035053-99035053|A/-|frameshift_variant;COL15A1|p.L1176Ifs*39|1|0.32|ENSG00000204291|chr9:99062087-99062088|-/A|frameshift_variant;ENSG00000204291|ENST00000375001|COL15A1 COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant;ENSG00000204291|ENST00000375001|COL15A1 ENSG00000204291|ENST00000375001|COL15A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 328.0108947753906 3 328.210059 981.608348 NaN NaN NaN NaN NaN NaN NaN 130.74 1 130.74 130.24 131.24 0 0 0 0 0.23508 1 25845 25845 0.26902 0 1 49945 613;7570 33197 33218 48976 48976 0.11680861670993181 VGRPEEEE 8 Unmodified _VGRPEEEE_ 0 0 0 ADGRB2|p.L1141Cfs*35|1|0.34|ENSG00000121753|chr1:31735214-31735214|G/-|frameshift_variant;nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2 ADGRB2|p.L1141Cfs*35|1|0.34|ENSG00000121753|chr1:31735214-31735214|G/-|frameshift_variant ADGRB2|p.L1141Cfs*35|1|0.34|ENSG00000121753|chr1:31735214-31735214|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1963195800781 3 315.482173 943.42469 -0.65873 -0.00020782 -1.0948 -0.0003454 -1.7536 -0.00055322 315.4817733760421 97.686 0.90446 93.766 93.054 93.959 -3.9194 33 25 2 0 0 0 1.0281 1 18753 18753 0.45834 0 1 1359000 49946 74 33198 33219 48977 48977 -0.0492857662119377 VGRPFALAGR 10 Unmodified _VGRPFALAGR_ 0 0 0 ENST00000567700.5_1_16:1832933-1836988:+|nuORF ENST00000567700.5_1_16:1832933-1836988:+|nuORF ENST00000567700.5_1_16:1832933-1836988:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26123046875 2 522.309075 1042.6036 NaN NaN NaN NaN NaN NaN NaN 79.968 1 79.968 79.468 80.468 0 0 0 0 0.22588 1 15564 15564 3.5965 1.2938 1 49947 11387 33199 33220 48978 48978 0.08399977528210911 VGRPKQHK 8 Unmodified _VGRPKQHK_ 0 0 0 REV__OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant;REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1814880371094 3 317.194521 948.561733 NaN NaN NaN NaN NaN NaN NaN 34.035 1 31.717 31.217 32.217 -2.3175 0 0 0 0.21486 1 6240 6240 0.45834 0 1 + 49948 16792;21970 33200 33221 48979 48979 0.08539421839702754 VGRPKQHK 8 Unmodified _VGRPKQHK_ 0 0 0 REV__OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant;REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1942138671875 3 317.194521 948.561733 NaN NaN NaN NaN NaN NaN NaN 34.097 1 31.779 31.279 32.279 -2.3175 0 0 0 0.21486 1 6253 6253 0.45834 0 1 + 49949 16792;21970 33200 33221 48980 48980 0.08539421839702754 VGRPKQHK 8 Unmodified _VGRPKQHK_ 0 0 0 REV__OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant;REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.19403076171875 3 317.194521 948.561733 NaN NaN NaN NaN NaN NaN NaN 34.485 1 32.168 31.668 32.668 -2.3175 0 0 0 0.21486 1 6333 6333 1.8442 0 1 + 49950 16792;21970 33200 33221 48981 48981 0.08539421839702754 VGRPKQHK 8 Unmodified _VGRPKQHK_ 0 0 0 REV__OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant;REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1864013671875 3 317.194521 948.561733 NaN NaN NaN NaN NaN NaN NaN 51.416 1 48.371 47.871 48.871 -3.0453 0 0 0 0.21486 1 9442 9442 0.45834 0 1 + 49951 16792;21970 33200 33221 48982 48982 0.08539421839702754 VGRPKQHK 8 Unmodified _VGRPKQHK_ 0 0 0 REV__OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant;REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF REV__ENST00000466604.5_1_3:31863684-32001816:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.19482421875 3 317.194521 948.561733 NaN NaN NaN NaN NaN NaN NaN 149.42 1 144.22 143.72 144.72 -5.1994 0 0 0 0.21486 1 28946 28946 0.45834 0 1 + 49952 16792;21970 33200 33221 48983 48983 0.08539421839702754 VGRPLRNLC 9 Unmodified _VGRPLRNLC_ 0 0 0 ENST00000418239.1_1_7:108039991-108097136:-|nuORF ENST00000418239.1_1_7:108039991-108097136:-|nuORF ENST00000418239.1_1_7:108039991-108097136:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.1992492675781 3 343.199166 1026.57567 NaN NaN NaN NaN NaN NaN NaN 62.189 1 59.228 58.728 59.728 -2.9614 0 0 0 0.23508 1 11997 11997 1.1933 0 1 49953 9639 33201 33222 48984 48984 0.06344331276477533 VGRPRSML 8 Unmodified _VGRPRSML_ 0 0 0 ENSG00000134516|ENST00000520908|DOCK2;ENST00000519868.1_1_5:169502602-169506159:+|nuORF;ENST00000520450.5_1_5:169484535-169509859:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000134516|ENST00000520908|DOCK2 ENSG00000134516|ENST00000520908|DOCK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.7591857910156 2 458.263279 914.512005 0.14127 6.4737E-05 0.98874 0.0004531 1.13 0.00051784 458.2636402597126 169.1 0.84265 164.17 163.83 164.67 -4.9295 60 23 3 0 0 0 8448 1 33457 33457 0.12286 0.12286 1 35112000 49954 3858 33202 33223 48985 48985 0.05132970839383688 VGRPVAVS 8 Unmodified _VGRPVAVS_ 0 0 0 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;DMXL2|p.F2385Lfs*5|1|0.29|ENSG00000104093|chr15:51474399-51474399|A/-|frameshift_variant;DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant;DMXL2|p.M1691*|1|0.08|ENSG00000104093|chr15:51488100-51488100|T/-|frameshift_variant;DMXL2|p.F1695Sfs*15|3|0.27|ENSG00000104093|chr15:51488087-51488087|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 393.2906494140625 2 392.73742 783.460287 0.27077 0.00010634 -0.082239 -3.2298E-05 0.18853 7.4041E-05 392.7373239483181 72.411 0.68485 68.783 68.442 69.127 -3.6275 24 18 2 0 0 0 1.0254 1 13625 13625 5.2307 0 1 1305500 49955 858 33203 33224 48986 48986 0.0598955041713225 VGRPVAVS 8 Unmodified _VGRPVAVS_ 0 0 0 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;DMXL2|p.F2385Lfs*5|1|0.29|ENSG00000104093|chr15:51474399-51474399|A/-|frameshift_variant;DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant;DMXL2|p.M1691*|1|0.08|ENSG00000104093|chr15:51488100-51488100|T/-|frameshift_variant;DMXL2|p.F1695Sfs*15|3|0.27|ENSG00000104093|chr15:51488087-51488087|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 392.73742 783.460287 -0.33673 -0.00013225 0.34774 0.00013657 0.011002 4.3207E-06 392.7375135643825 72.152 0.63484 68.841 68.424 69.058 -3.3107 0.034447 9.1308E-05 NaN 5.2307 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1689900 49956 858 33203 33224 0.0598955041713225 VGRPVAVS 8 Unmodified _VGRPVAVS_ 0 0 0 DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;DMXL2|p.F2385Lfs*5|1|0.29|ENSG00000104093|chr15:51474399-51474399|A/-|frameshift_variant;DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant;DMXL2|p.M1691*|1|0.08|ENSG00000104093|chr15:51488100-51488100|T/-|frameshift_variant;DMXL2|p.F1695Sfs*15|3|0.27|ENSG00000104093|chr15:51488087-51488087|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 392.73742 783.460287 -0.23923 -9.3955E-05 0.31661 0.00012434 0.077376 3.0389E-05 392.7374866314404 72.334 0.51434 68.796 68.536 69.051 -3.5385 -0.010971 6.6857E-05 NaN 5.2307 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1614900 49957 858 33203 33224 0.0598955041713225 VGRPYKNT 8 Unmodified _VGRPYKNT_ 0 0 0 REV__ENST00000546387.1_1_12:44238454-44238748:+|nuORF REV__ENST00000546387.1_1_12:44238454-44238748:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.14892578125 3 312.175015 933.503215 NaN NaN NaN NaN NaN NaN NaN 27.857 1 27.857 27.357 28.357 0 0 0 0 0.21486 1 4929 4929 0.45834 0 1 + 49958 16504 33204 33225 48987 48987 0.03380320474548171 VGRQEPLL 8 Unmodified _VGRQEPLL_ 0 0 0 REV__ENSG00000187961|ENST00000338591|KLHL17 REV__ENSG00000187961|ENST00000338591|KLHL17 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.2477722167969 3 304.515148 910.523616 -0.4474 -0.00013624 0.54278 0.00016528 0.095381 2.9045E-05 304.5152441801075 24.32 0.37439 24.32 24.066 24.44 0 17 10 2 0 0 0 1.0281 1 4157 4157 0.45834 0 1 1935500 + 49959 19122 33205 33226 48988 48988 0.06477491134376123 VGRQEPLL 8 Unmodified _VGRQEPLL_ 0 0 0 REV__ENSG00000187961|ENST00000338591|KLHL17 REV__ENSG00000187961|ENST00000338591|KLHL17 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 304.515148 910.523616 -0.72271 -0.00022008 0.54363 0.00016554 -0.17908 -5.4532E-05 304.51526956360823 26.023 0.38106 24.101 23.882 24.264 -1.9222 -0.10955 3.1959E-07 NaN 0.45834 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2022600 + 49960 19122 33205 33226 0.06477491134376123 VGRQPFVL 8 Unmodified _VGRQPFVL_ 0 0 0 ENST00000527132.1_1_11:11985552-11985876:-|nuORF ENST00000527132.1_1_11:11985552-11985876:-|nuORF ENST00000527132.1_1_11:11985552-11985876:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2275085449219 2 458.27417 914.533787 NaN NaN NaN NaN NaN NaN NaN 113.53 1 109.26 108.76 109.76 -4.2725 0 0 0 0.23749 1 21866 21866 0.0082765 0 1 49961 10925 33206 33227 48989 48989 0.07310098859602476 VGRRAGRLA 9 Unmodified _VGRRAGRLA_ 0 0 0 REV__ENST00000436163.2_X:117250221-117250470:-|nuORF REV__ENST00000436163.2_X:117250221-117250470:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.1243896484375 3 319.201787 954.583531 NaN NaN NaN NaN NaN NaN NaN 64.542 1 64.542 64.042 65.042 0 0 0 0 0.23508 1 12426 12426 1.1933 0 1 + 49962 21668 33207 33228 48990 48990 0.10442226588259018 VGRRFVKKTL 10 Unmodified _VGRRFVKKTL_ 0 0 0 ENST00000518780.1_1_8:1704216-1707628:+|nuORF ENST00000518780.1_1_8:1704216-1707628:+|nuORF ENST00000518780.1_1_8:1704216-1707628:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2870483398438 2 602.387857 1202.76116 NaN NaN NaN NaN NaN NaN NaN 152.1 1 152.1 151.6 152.6 0 0 0 0 2.8426 1 30466 30466 0 0 1 49963 10809 33208 33229 48991 48991 0.16789057067603608 VGRRKERC 8 Unmodified _VGRRKERC_ 0 0 0 REV__ENSG00000154529|ENST00000377561|CNTNAP3B REV__ENSG00000154529|ENST00000377561|CNTNAP3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 335.18841552734375 3 335.190782 1002.55052 -0.025856 -8.6668E-06 -1.4057 -0.00047119 -1.4316 -0.00047985 335.1899894992669 44.82 0.87725 42.054 41.529 42.406 -2.7661 46 24 3 0 0 0 0.86089 1 8031 8031 1.6526 0.32309 1 2628200 + 49964 17185 33209 33230 48992 48992 0.04934276473909449 VGRRKERC 8 Unmodified _VGRRKERC_ 0 0 0 REV__ENSG00000154529|ENST00000377561|CNTNAP3B REV__ENSG00000154529|ENST00000377561|CNTNAP3B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 335.190782 1002.55052 -0.1928 -6.4626E-05 -0.81772 -0.00027409 -1.0105 -0.00033872 335.1902826365885 42.195 0.81079 42.195 41.828 42.639 0 0.10749 1.7262E-05 NaN 1.6526 48 22 3 NaN NaN NaN NaN 0 NaN NaN 0 1688400 + 49965 17185 33209 33230 0.04934276473909449 VGRRKERC 8 Unmodified _VGRRKERC_ 0 0 0 REV__ENSG00000154529|ENST00000377561|CNTNAP3B REV__ENSG00000154529|ENST00000377561|CNTNAP3B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 335.190782 1002.55052 -0.29753 -9.9728E-05 -1.1723 -0.00039293 -1.4698 -0.00049266 335.19023056860635 44.83 0.70745 42.04 41.677 42.385 -2.79 -0.047607 -0.00033925 NaN 1.6526 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 4487200 + 49966 17185 33209 33230 0.04934276473909449 VGRRKERC 8 Unmodified _VGRRKERC_ 0 0 0 REV__ENSG00000154529|ENST00000377561|CNTNAP3B REV__ENSG00000154529|ENST00000377561|CNTNAP3B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 335.190782 1002.55052 -0.025856 -8.6668E-06 -1.4057 -0.00047119 -1.4316 -0.00047985 335.1899894992669 44.82 0.87725 42.054 41.529 42.406 -2.7661 -0.033984 -0.00057402 NaN 1.6526 46 24 3 NaN NaN NaN NaN 0 NaN NaN 0 2628200 + 49967 17185 33209 33230 0.04934276473909449 VGRRKERC 8 Unmodified _VGRRKERC_ 0 0 0 REV__ENSG00000154529|ENST00000377561|CNTNAP3B REV__ENSG00000154529|ENST00000377561|CNTNAP3B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 335.190782 1002.55052 -0.78554 -0.0002633 -0.31091 -0.00010421 -1.0964 -0.00036752 335.1905277771337 44.809 0.84241 42.062 41.568 42.41 -2.7475 -0.025896 0.0005269 NaN 1.6526 55 23 3 NaN NaN NaN NaN 0 NaN NaN 0 1808200 + 49968 17185 33209 33230 0.04934276473909449 VGRRLLIRV 9 Unmodified _VGRRLLIRV_ 0 0 0 REV__ENSG00000183421|ENST00000332512|RIPK4 REV__ENSG00000183421|ENST00000332512|RIPK4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2743530273438 2 541.369467 1080.72438 NaN NaN NaN NaN NaN NaN NaN 159.68 1 154.89 154.39 155.39 -4.7952 0 0 0 0.19634 1 31751 31751 0.0033805 0 1 + 49969 18833 33210 33231 48993 48993 0.18724805241708964 VGRRPKRM 8 Unmodified _VGRRPKRM_ 0 0 0 REV__MMP3|p.C92R|1|0.2|ENSG00000149968|chr11:102842748-102842748|A/G|missense_variant REV__MMP3|p.C92R|1|0.2|ENSG00000149968|chr11:102842748-102842748|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 500.1602478027344 2 500.30327 998.591987 NaN NaN NaN NaN NaN NaN NaN 12.701 1 11.571 11.071 12.071 -1.1293 0 0 0 0.23749 1 1581 1581 0.12286 0.11948 1 + 49970 23867 33211 33232 48994 48994 0.09263457233237204 VGRRPPAP 8 Unmodified _VGRRPPAP_ 0 0 0 ENST00000482061.6_1_3:155520358-155523958:-|nuORF;ENST00000486435.1_1_3:155521880-155523958:-|nuORF ENST00000482061.6_1_3:155520358-155523958:-|nuORF ENST00000482061.6_1_3:155520358-155523958:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2548828125 2 425.256311 848.49807 NaN NaN NaN NaN NaN NaN NaN 11.924 1 11.924 11.424 12.424 0 0 0 0 0.21486 1 1622 1622 2.5775 0 1 49971 10389 33212 33233 48995 48995 0.06776061402604228 VGRRPRRL 8 Unmodified _VGRRPRRL_ 0 0 0 REV__ENST00000341735.3_1_15:90319632-90321465:+|nuORF REV__ENST00000341735.3_1_15:90319632-90321465:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.201416015625 3 337.221181 1008.64171 NaN NaN NaN NaN NaN NaN NaN 30.457 1 28.34 27.84 28.84 -2.1167 0 0 0 0.21486 1 5502 5502 0.45834 0 1 + 49972 20717 33213 33234 48996 48996 0.13773908233554266 VGRRPRRL 8 Unmodified _VGRRPRRL_ 0 0 0 REV__ENST00000341735.3_1_15:90319632-90321465:+|nuORF REV__ENST00000341735.3_1_15:90319632-90321465:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.2024230957031 3 337.221181 1008.64171 NaN NaN NaN NaN NaN NaN NaN 25.228 1 23.374 22.874 23.874 -1.8534 0 0 0 0.2396 1 4137 4137 0 0 1 + 49973 20717 33213 33234 48997 48997 0.13773908233554266 VGRRPRRL 8 Unmodified _VGRRPRRL_ 0 0 0 REV__ENST00000341735.3_1_15:90319632-90321465:+|nuORF REV__ENST00000341735.3_1_15:90319632-90321465:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.06268310546875 3 337.221181 1008.64171 NaN NaN NaN NaN NaN NaN NaN 61.736 1 58.496 57.996 58.996 -3.2395 0 0 0 0.21486 1 11562 11562 0.45834 0 1 + 49974 20717 33213 33234 48998 48998 0.13773908233554266 VGRRRLRL 8 Unmodified _VGRRRLRL_ 0 0 0 ENST00000358230.7_1_12:66563750-66563789:-|nuORF ENST00000358230.7_1_12:66563750-66563789:-|nuORF ENST00000358230.7_1_12:66563750-66563789:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 513.2930908203125 2 513.343784 1024.67301 0.21187 0.00010876 -2.243 -0.0011514 -2.0311 -0.0010427 513.8441259629786 160.45 0.10954 160.45 160.38 160.49 0 4 2 2 0 0 0 0.89951 1 32209 32209 0 0 1 607580 49975 8987 33214 33235 48999 48999 0.16166481267623567 VGRRRPGS 8 Unmodified _VGRRRPGS_ 0 0 0 REV__ENST00000263635.7_1_2:160086133-160086289:+|nuORF REV__ENST00000263635.7_1_2:160086133-160086289:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 442.7423095703125 2 442.762292 883.510031 NaN NaN NaN NaN NaN NaN NaN 45.271 1 45.271 44.771 45.771 0 0 0 0 0.23749 1 8507 8507 0.12286 0.12286 1 + 49976 20215 33215 33236 49000 49000 0.06361678145799488 VGRRRSFS 8 Unmodified _VGRRRSFS_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.2819519042969 3 322.186025 963.536246 NaN NaN NaN NaN NaN NaN NaN 12.479 1 11.35 10.85 11.85 -1.1293 0 0 0 0.21486 1 1532 1532 0.45834 0 1 49977 5189 33216 33237 49001 49001 0.05301947317275335 VGRRRVCWGK 10 Unmodified _VGRRRVCWGK_ 0 0 0 ENST00000225729.7_1_17:18010580-18010793:+|nuORF ENST00000225729.7_1_17:18010580-18010793:+|nuORF ENST00000225729.7_1_17:18010580-18010793:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.8872375488281 4 304.926555 1215.67711 -2.2933 -0.00069929 -0.034047 -1.0382E-05 -2.3273 -0.00070967 304.92675679436246 7.8616 1.7427 6.8468 5.5175 7.2602 -1.0148 60 49 2 0 0 0 0.91149 1 703 703 0 0 1 252470 49978 8143 33217 33238 49002 49002 0.07790202699015936 VGRSASSSNC 10 Unmodified _VGRSASSSNC_ 0 0 0 ENST00000320848.6_1_4:6711426-6711471:-|nuORF ENST00000320848.6_1_4:6711426-6711471:-|nuORF ENST00000320848.6_1_4:6711426-6711471:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1580810546875 3 323.146907 966.418893 NaN NaN NaN NaN NaN NaN NaN 81.488 1 77.649 77.149 78.149 -3.8392 0 0 0 0.22588 1 15473 15473 0.77653 0.31819 1 49979 8713 33218 33239 49003 49003 -0.06565998404505535 VGRSFTNR 8 Unmodified _VGRSFTNR_ 0 0 0 REV__ENSG00000095587|ENST00000357947|TLL2 REV__ENSG00000095587|ENST00000357947|TLL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.9979248046875 3 312.838514 935.493713 -0.58022 -0.00018152 -0.58734 -0.00018374 -1.1676 -0.00036526 312.83864444104296 15.624 0.13428 15.624 15.539 15.673 0 6 3 2 0 0 0 1.0277 1 2373 2373 1.6526 0 1 251780 + 49980 14612 33219 33240 49004 49004 0.023385521890304517 VGRSKLERV 9 Unmodified _VGRSKLERV_ 0 0 0 REV__ENSG00000213246|ENST00000225504|SUPT4H1 REV__ENSG00000213246|ENST00000225504|SUPT4H1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2672119140625 2 522.31964 1042.62473 NaN NaN NaN NaN NaN NaN NaN 22.911 1 21.458 20.958 21.958 -1.4535 0 0 0 0.19646 1 3673 3673 0.073264 0 1 + 49981 19638 33220 33241 49005 49005 0.1051194283706991 VGRSKVGP 8 Unmodified _VGRSKVGP_ 0 0 0 REV__ENST00000396987.7_1_8:41480416-41480683:+|nuORF REV__ENST00000396987.7_1_8:41480416-41480683:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 400.24359130859375 2 400.24287 798.471186 NaN NaN NaN NaN NaN NaN NaN 125.5 1 120.86 120.36 121.36 -4.6495 0 0 0 0.2343 1 24149 24149 0.0082765 0 1 + 49982 21292 33221 33242 49006 49006 0.06388952791428437 VGRSLRAA 8 Unmodified _VGRSLRAA_ 0 0 0 REV__TSHZ1|p.K450Efs*47|1|0.13|ENSG00000179981|chr18:75286754-75286755|TA/-|frameshift_variant REV__TSHZ1|p.K450Efs*47|1|0.13|ENSG00000179981|chr18:75286754-75286755|TA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.25396728515625 2 415.253769 828.492984 NaN NaN NaN NaN NaN NaN NaN 17.016 1 15.743 15.243 16.243 -1.2722 0 0 0 0.21486 1 2483 2483 2.5775 0.27475 1 + 49983 25491 33222 33243 49007 49007 0.07187757539975337 VGRSPRPPP 9 Unmodified _VGRSPRPPP_ 0 0 0 REV__sp|P09716|US17_HCMVAUncharacterizedproteinHVLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US17PE=3SV=1 REV__sp|P09716|US17_HCMVAUncharacterizedproteinHVLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US17PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78192138671875 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 26.811 1 25.029 24.529 25.529 -1.7821 0 0 0 0.23508 1 4745 4745 7.9102 0 1 + 49984 24673 33223 33244 49008 49008 0.06343715602793054 VGRSRHVP 8 Unmodified _VGRSRHVP_ 0 0 0 ENST00000289431.9_1_20:48520827-48521001:-|nuORF ENST00000289431.9_1_20:48520827-48521001:-|nuORF ENST00000289431.9_1_20:48520827-48521001:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 303.170166015625 3 303.178871 906.514782 NaN NaN NaN NaN NaN NaN NaN 68.298 1 64.908 64.408 65.408 -3.3903 0 0 0 0.21486 1 12891 12891 0.45834 0 1 49985 8468 33224 33245 49009 49009 0.057785622885603516 VGRSVVTKI 9 Unmodified _VGRSVVTKI_ 0 0 0 REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1 REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.2667541503906 3 320.206315 957.597115 NaN NaN NaN NaN NaN NaN NaN 17.423 1 16.151 15.651 16.651 -1.2722 0 0 0 0.23508 1 2565 2565 0.26902 0 1 + 49986 25089 33225 33246 49010 49010 0.11662039576845018 VGRSYLWY 8 Unmodified _VGRSYLWY_ 0 0 0 REV__ENSG00000006116|ENST00000005284|CACNG3 REV__ENSG00000006116|ENST00000005284|CACNG3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2699584960938 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 12.52 1 11.391 10.891 11.891 -1.1293 0 0 0 0.21486 1 1539 1539 0.79363 0 1 + 49987 13869 33226 33247 49011 49011 0.004054911343700951 VGRTEILISV 10 Unmodified _VGRTEILISV_ 0 0 0 ENST00000555879.5_1_14:102606435-102675210:+|nuORF ENST00000555879.5_1_14:102606435-102675210:+|nuORF ENST00000555879.5_1_14:102606435-102675210:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.78125 2 543.829506 1085.64446 0.32005 0.00017405 0.21503 0.00011694 0.53508 0.00029099 543.828894463621 113.16 0.57957 113.16 112.73 113.31 0 23 16 2 0 0 0 0.53093 1 22175 22175 0.0013812 0 1 1895400 49988 11234 33227 33248 49012 49012 0.10506274057183873 VGRTERHL 8 Unmodified _VGRTERHL_ 0 0 0 ENST00000452622.1_1_7:560084-560396:+|nuORF ENST00000452622.1_1_7:560084-560396:+|nuORF ENST00000452622.1_1_7:560084-560396:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.18426513671875 3 323.185914 966.535912 NaN NaN NaN NaN NaN NaN NaN 69.755 1 69.755 69.255 70.255 0 0 0 0 0.21486 1 13505 13505 0.45834 0 1 49989 9994 33228 33249 49013 49013 0.051305275974073083 VGRTKLLKKH 10 Unmodified _VGRTKLLKKH_ 0 0 0 REV__ENST00000371142.8_1_10:98281086-98281143:-|nuORF REV__ENST00000371142.8_1_10:98281086-98281143:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.267578125 2 590.387857 1178.76116 NaN NaN NaN NaN NaN NaN NaN 141.77 1 136.9 136.4 137.4 -4.8678 0 0 0 2.8426 1 27355 27355 0 0 1 + 49990 20997 33229 33250 49014 49014 0.17893057067612972 VGRTLVAI 8 Unmodified _VGRTLVAI_ 0 0 0 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 414.8737487792969 2 414.76872 827.522887 NaN NaN NaN NaN NaN NaN NaN 31.145 1 31.145 30.645 31.645 0 0 0 0 0.23782 1 5616 5616 0.0082765 0 1 49991 26324 33230 33251 49015 49015 0.10222696485311644 VGRTRPPLRK 10 Unmodified _VGRTRPPLRK_ 0 0 0 ENST00000521391.1_1_5:167891940-167899269:+|nuORF ENST00000521391.1_1_5:167891940-167899269:+|nuORF ENST00000521391.1_1_5:167891940-167899269:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2693481445312 2 590.375281 1178.73601 NaN NaN NaN NaN NaN NaN NaN 123.95 1 119.36 118.86 119.86 -4.5926 0 0 0 2.8426 1 23855 23855 0.0013812 0 1 49992 10845 33231 33252 49016 49016 0.15379002265012787 VGRVAGQHLQ 10 Unmodified _VGRVAGQHLQ_ 0 0 0 REV__ENST00000379698.8_1_X:19713767-19713848:-|nuORF REV__ENST00000379698.8_1_X:19713767-19713848:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2733764648438 2 532.801614 1063.58868 0.086311 4.5987E-05 0.80983 0.00043148 0.89614 0.00047746 533.3033546147071 101.98 0.2084 97.796 97.646 97.855 -4.1861 8 5 2 0 0 0 0.5179 1 20024 20024 0.043787 0 1 1456000 + 49993 21144 33232 33253 49017 49017 0.05942485660239072 VGRVLQRDAVT 11 Unmodified _VGRVLQRDAVT_ 0 0 0 REV__ENST00000478486.5_1_6:31940188-31947331:+|nuORF REV__ENST00000478486.5_1_6:31940188-31947331:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.3006896972656 3 405.238566 1212.69387 NaN NaN NaN NaN NaN NaN NaN 15.688 1 14.466 13.966 14.966 -1.2219 0 0 0 0.23698 1 2215 2215 1.3296 0.36737 1 + 49994 22021 33233 33254 49018 49018 0.09602982065962351 VGRVLVLFLY 10 Unmodified _VGRVLVLFLY_ 0 0 0 ENST00000489377.1_1_9:103207326-103207509:+|nuORF ENST00000489377.1_1_9:103207326-103207509:+|nuORF ENST00000489377.1_1_9:103207326-103207509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.257080078125 2 589.868434 1177.72232 NaN NaN NaN NaN NaN NaN NaN 34.749 1 32.497 31.997 32.997 -2.2527 0 0 0 0.22588 1 6102 6102 1.8442 0.19162 1 49995 10498 33234 33255 49019 49019 0.14056331713231884 VGRVLVLFLY 10 Unmodified _VGRVLVLFLY_ 0 0 0 ENST00000489377.1_1_9:103207326-103207509:+|nuORF ENST00000489377.1_1_9:103207326-103207509:+|nuORF ENST00000489377.1_1_9:103207326-103207509:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2574462890625 2 589.868434 1177.72232 0.45085 0.00026594 3.3994 0.0020052 3.8503 0.0022712 590.3705860940961 132.4 0.10832 127.55 127.49 127.6 -4.8527 4 2 2 0 0 0 1.133 1 25427 25427 0.043787 0 1 665360 49996 10498 33234 33255 49020 49020 0.14056331713231884 VGRVQDFL 8 Unmodified _VGRVQDFL_ 0 0 0 ENSG00000162040|ENST00000454677|HS3ST6 ENSG00000162040|ENST00000454677|HS3ST6 ENSG00000162040|ENST00000454677|HS3ST6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.1543273925781 3 311.843265 932.507966 NaN NaN NaN NaN NaN NaN NaN 31.563 1 29.414 28.914 29.914 -2.1483 0 0 0 0.21486 1 5442 5442 0.45834 0 1 49997 5310 33235 33256 49021 49021 0.03901204617318399 VGRVRLLRK 9 Unmodified _VGRVRLLRK_ 0 0 0 MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1 MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 549.2354125976562 2 548.874917 1095.73528 NaN NaN NaN NaN NaN NaN NaN 172.71 1 167.92 167.42 168.42 -4.7898 0 0 0 0.19632 1 35197 35197 0.073264 0.029476 1 49998 2672 33236 33257 49022 49022 0.19124207615982414 VGRVVPRA 8 Unmodified _VGRVVPRA_ 0 0 0 ENST00000237654.8_1_4:77987453-77996858:-|nuORF ENST00000237654.8_1_4:77987453-77996858:-|nuORF ENST00000237654.8_1_4:77987453-77996858:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.2938537597656 2 427.271961 852.52937 NaN NaN NaN NaN NaN NaN NaN 13.398 1 12.278 11.778 12.778 -1.1206 0 0 0 0.21486 1 1690 1690 2.5775 0 1 49999 8171 33237 33258 49023 49023 0.09720634436700948 VGRVYPQAVY 10 Unmodified _VGRVYPQAVY_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3377075195312 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 124.46 1 119.85 119.35 120.35 -4.6134 0 0 0 0.22588 1 23948 23948 11.64 4.3511 1 50000 7260 33238 33259 49024 49024 0.04421120742927087 VGRWHLVRR 9 Unmodified _VGRWHLVRR_ 0 0 0 REV__ZDHHC19|p.V270Gfs*83|1|0.18|ENSG00000163958|chr3:196198416-196198416|A/-|frameshift_variant REV__ZDHHC19|p.V270Gfs*83|1|0.18|ENSG00000163958|chr3:196198416-196198416|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2538452148438 2 589.854516 1177.69448 NaN NaN NaN NaN NaN NaN NaN 46.116 1 43.25 42.75 43.75 -2.8666 0 0 0 0.19624 1 8388 8388 0 0 1 + 50001 25558 33239 33260 49025 49025 0.11273866296346569 VGRYKGRR 8 Unmodified _VGRYKGRR_ 0 0 0 nc|ENSG00000214655|A7E2V4-2|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8 nc|ENSG00000214655|A7E2V4-2|ZSWIM8 nc|ENSG00000214655|A7E2V4-2|ZSWIM8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 331.1940612792969 3 331.201787 990.583531 NaN NaN NaN NaN NaN NaN NaN 85.727 1 85.727 85.227 86.227 0 0 0 0 0.21486 1 16730 16730 1.8442 0 1 50002 12594 33240 33261 49026 49026 0.08786226588267709 VGRYKGRR 8 Unmodified _VGRYKGRR_ 0 0 0 nc|ENSG00000214655|A7E2V4-2|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8 nc|ENSG00000214655|A7E2V4-2|ZSWIM8 nc|ENSG00000214655|A7E2V4-2|ZSWIM8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 331.19488525390625 3 331.201787 990.583531 NaN NaN NaN NaN NaN NaN NaN 87.891 1 87.891 87.391 88.391 0 0 0 0 0.21486 1 17151 17151 0.45834 0 1 50003 12594 33240 33261 49027 49027 0.08786226588267709 VGRYLAMQ 8 Unmodified _VGRYLAMQ_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.17034912109375 3 313.168984 936.485122 NaN NaN NaN NaN NaN NaN NaN 26.632 1 24.998 24.498 25.498 -1.6347 0 0 0 0.21486 1 4426 4426 1.6526 0 1 + 50004 19227 33241 33262 49028 49028 0.014338622282025426 VGSAAMYTSG 10 Unmodified _VGSAAMYTSG_ 0 0 0 REV__ENSG00000138031|ENST00000679454|ADCY3 REV__ENSG00000138031|ENST00000679454|ADCY3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1700439453125 3 315.144504 942.411682 NaN NaN NaN NaN NaN NaN NaN 81.806 1 78.249 77.749 78.749 -3.557 0 0 0 0.22588 1 15983 15983 0.77653 0.31819 1 + 50005 16428 33242 33263 49029 49029 -0.06182731004935249 VGSADEEEDP 10 Unmodified _VGSADEEEDP_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000463627.1_1_2:114195445-114199019:+|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6981811523438 2 524.209283 1046.40401 -0.0066482 -3.485E-06 0.44194 0.00023167 0.43529 0.00022818 524.7097839926543 157 0.18222 152.21 152.06 152.24 -4.7885 5 4 2 0 0 0 0.83242 1 31212 31212 14.838 1.3304 1 468700 50006 4027 33243 33264 49030 49030 -0.11733211791511167 VGSAETFLR 9 Unmodified _VGSAETFLR_ 0 0 0 ENST00000337205.8_3_20:44416576-44417641:-|nuORF;ENST00000372632.6_1_20:44404187-44418535:-|nuORF;ENST00000467679.5_1_20:44404187-44417641:-|nuORF ENST00000337205.8_3_20:44416576-44417641:-|nuORF ENST00000337205.8_3_20:44416576-44417641:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2561950683594 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 138.27 1 138.27 137.77 138.77 0 0 0 0 0.23508 1 27448 27448 7.9102 0.62092 1 50007 8814 33244 33265 49031 49031 0.023328834091216777 VGSAGGFG 8 Unmodified _VGSAGGFG_ 0 0 0 ENST00000452770.6_2_3:47323859-47324049:-|nuORF;ENST00000335044.6_2_3:47318868-47324082:-|nuORF ENST00000452770.6_2_3:47323859-47324049:-|nuORF ENST00000452770.6_2_3:47323859-47324049:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 326.1594543457031 2 326.158471 650.30239 NaN NaN NaN NaN NaN NaN NaN 74.68 1 74.68 74.18 75.18 0 0 0 0 0.21486 1 14500 14500 2.8892 2.0956 1 50008 8797 33245 33266 49032 49032 -0.036749488420923626 VGSAGGFG 8 Unmodified _VGSAGGFG_ 0 0 0 ENST00000452770.6_2_3:47323859-47324049:-|nuORF;ENST00000335044.6_2_3:47318868-47324082:-|nuORF ENST00000452770.6_2_3:47323859-47324049:-|nuORF ENST00000452770.6_2_3:47323859-47324049:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 326.1944580078125 2 326.158471 650.30239 -0.25057 -8.1727E-05 0.67516 0.00022021 0.42459 0.00013848 326.1586824730032 82.892 0.61127 82.892 82.468 83.079 0 21 17 2 0 0 0 1.0249 1 16140 16140 0 0 1 1824400 50009 8797 33245 33266 49033 49033 -0.036749488420923626 VGSALCEL 8 Unmodified _VGSALCEL_ 0 0 0 REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2 REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 396.526611328125 2 396.202021 790.38949 NaN NaN NaN NaN NaN NaN NaN 63.562 1 60.305 59.805 60.805 -3.2567 0 0 0 0.23749 1 11928 11928 0.0082765 0 1 + 50010 16971 33246 33267 49034 49034 -0.014089106826986608 VGSARVRRRT 10 Unmodified _VGSARVRRRT_ 0 0 0 ENST00000413384.6_1_7:150756719-150759034:+|nuORF ENST00000413384.6_1_7:150756719-150759034:+|nuORF ENST00000413384.6_1_7:150756719-150759034:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 578.900634765625 2 579.352337 1156.69012 NaN NaN NaN NaN NaN NaN NaN 166.71 1 161.76 161.26 162.26 -4.948 0 0 0 0.22588 1 32712 32712 8.7454 0.58988 1 50011 9591 33247 33268 49035 49035 0.11804357082792194 VGSARYSLTY 10 Unmodified _VGSARYSLTY_ 0 0 0 REV__nc|ENSG00000273962|A0A087WW87|IGKV2-40 REV__nc|ENSG00000273962|A0A087WW87|IGKV2-40 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.1366271972656 3 372.860984 1115.56112 0.21012 7.8344E-05 -0.32151 -0.00011988 -0.1114 -4.1536E-05 372.8608271827691 33.945 0.55206 31.798 31.496 32.048 -2.1468 54 15 5 0 0 0 0.91149 1 5885 5885 1.9064 0 1 11652000 + 50012 24305 33248 33269 49036 49036 0.007965376093125087 VGSAVQAEL 9 Unmodified _VGSAVQAEL_ 0 0 0 ENST00000327827.11_1_16:9185513-9185606:+|nuORF ENST00000327827.11_1_16:9185513-9185606:+|nuORF ENST00000327827.11_1_16:9185513-9185606:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2359313964844 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 72.105 1 68.566 68.066 69.066 -3.5385 0 0 0 0.21065 1 13676 13676 20.454 4.6064 1 50013 8748 33249 33270 49037 49037 0.019015056264720442 VGSAVQAEL 9 Unmodified _VGSAVQAEL_ 0 0 0 ENST00000327827.11_1_16:9185513-9185606:+|nuORF ENST00000327827.11_1_16:9185513-9185606:+|nuORF ENST00000327827.11_1_16:9185513-9185606:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2358093261719 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 72.356 1 68.817 68.317 69.317 -3.5385 0 0 0 0.1761 1 13721 13721 26.884 0 1 50014 8748 33249 33270 49038 49038 0.019015056264720442 VGSCDELGLS 10 Unmodified _VGSCDELGLS_ 0 0 0 REV__ARMCX1|p.P88S|1|0.45|ENSG00000126947|chrX:101553192-101553192|C/T|missense_variant REV__ARMCX1|p.P88S|1|0.45|ENSG00000126947|chrX:101553192-101553192|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25421142578125 2 490.223682 978.432811 NaN NaN NaN NaN NaN NaN NaN 143.89 1 139.23 138.73 139.73 -4.6596 0 0 0 0.22588 1 28472 28472 9.3831 0 1 + 50015 13125 33250 33271 49039 49039 -0.057267656960675595 VGSCDELGLS 10 Unmodified _VGSCDELGLS_ 0 0 0 REV__ARMCX1|p.P88S|1|0.45|ENSG00000126947|chrX:101553192-101553192|C/T|missense_variant REV__ARMCX1|p.P88S|1|0.45|ENSG00000126947|chrX:101553192-101553192|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.27410888671875 2 490.223682 978.432811 0.19544 9.5808E-05 1.2954 0.00063504 1.4908 0.00073085 490.22422829921436 144.25 0.54939 139.18 138.97 139.52 -5.0671 21 15 2 0 0 0 0.87854 1 27856 27856 13.906 1.3745 1 2608500 + 50016 13125 33250 33271 49040 49040 -0.057267656960675595 VGSCFCEDC 9 Unmodified _VGSCFCEDC_ 0 0 0 REV__LAMA2|p.K682Efs*22|1|0.32|ENSG00000196569|chr6:129252243-129252244|AA/-|frameshift_variant REV__LAMA2|p.K682Efs*22|1|0.32|ENSG00000196569|chr6:129252243-129252244|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.240234375 2 481.656264 961.297974 NaN NaN NaN NaN NaN NaN NaN 160.09 1 160.09 159.59 160.59 0 0 0 0 0.19624 1 32146 32146 0 0 1 + 50017 19259 33251 33272 49041 49041 -0.18422285433848629 VGSCFCEDC 9 Unmodified _VGSCFCEDC_ 0 0 0 REV__LAMA2|p.K682Efs*22|1|0.32|ENSG00000196569|chr6:129252243-129252244|AA/-|frameshift_variant REV__LAMA2|p.K682Efs*22|1|0.32|ENSG00000196569|chr6:129252243-129252244|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7722473144531 2 481.656264 961.297974 NaN NaN NaN NaN NaN NaN NaN 17.136 1 15.621 15.121 16.121 -1.5148 0 0 0 0.23508 1 2469 2469 0.6015 0 1 + 50018 19259 33251 33272 49042 49042 -0.18422285433848629 VGSCLRVGE 9 Unmodified _VGSCLRVGE_ 0 0 0 ENST00000487169.5_1_2:242169018-242169255:-|nuORF ENST00000487169.5_1_2:242169018-242169255:-|nuORF ENST00000487169.5_1_2:242169018-242169255:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2352600097656 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 87.854 1 83.858 83.358 84.358 -3.9953 0 0 0 0.19669 1 16731 16731 0.40827 0 1 50019 10466 33252 33273 49043 49043 -0.0031903201407885717 VGSCLRVGE 9 Unmodified _VGSCLRVGE_ 0 0 0 ENST00000487169.5_1_2:242169018-242169255:-|nuORF ENST00000487169.5_1_2:242169018-242169255:-|nuORF ENST00000487169.5_1_2:242169018-242169255:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2355041503906 2 460.236927 918.459301 NaN NaN NaN NaN NaN NaN NaN 88.173 1 84.178 83.678 84.678 -3.9953 0 0 0 0.19679 1 16794 16794 0.073264 0 1 50020 10466 33252 33273 49044 49044 -0.0031903201407885717 VGSCNRTI 8 Unmodified _VGSCNRTI_ 0 0 0 ENSG00000127329|ENST00000334414|PTPRB;PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant;PTPRB|p.Q169Rfs*46|1|0.53|ENSG00000127329|chr12:70622593-70622593|G/-|frameshift_variant;ENST00000552253.1_1_12:70986014-71031175:-|nuORF;PTPRB|p.P401Lfs*55|1|0.07|ENSG00000127329|chr12:70590158-70590158|G/-|frameshift_variant;ENST00000538174.6_1_12:70979073-71031175:-|nuORF;PTPRB|p.N770Kfs*7|1|0.29|ENSG00000127329|chr12:70571966-70571967|-/T|frameshift_variant ENSG00000127329|ENST00000334414|PTPRB ENSG00000127329|ENST00000334414|PTPRB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2441711425781 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 95.983 1 92.102 91.602 92.602 -3.881 0 0 0 0.20568 1 18421 18421 20.871 5.103 1 50021 3471 33253 33274 49045 49045 -0.012835877025963782 VGSCNYINVL 10 Unmodified _VGSCNYINVL_ 0 0 0 REV__ENST00000554756.1_1_14:24805383-24807435:-|nuORF REV__ENST00000554756.1_1_14:24805383-24807435:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2711791992188 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 146.39 1 146.39 145.89 146.89 0 0 0 0 0.22588 1 29270 29270 9.3831 0.035688 1 + 50022 15964 33254 33275 49046 49046 -0.00966207154078802 VGSCPGHPCT 10 Unmodified _VGSCPGHPCT_ 0 0 0 ENST00000397677.5_1_8:23118991-23119336:+|nuORF ENST00000397677.5_1_8:23118991-23119336:+|nuORF ENST00000397677.5_1_8:23118991-23119336:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7441101074219 2 479.199487 956.384421 0.11854 5.6802E-05 -1.5518 -0.0007436 -1.4332 -0.0006868 479.19855179535176 61.777 0.77865 58.407 58.037 58.816 -3.3694 30 21 2 0 0 0 0.744 1 11519 11519 6.7232 0.96273 1 1057600 50023 9471 33255 33276 49047 49047 -0.09551537816957989 VGSCTTSLCLC 11 Unmodified _VGSCTTSLCLC_ 0 0 0 MED12|p.Y918C|1|0.63|ENSG00000184634|chrX:71127036-71127036|A/G|missense_variant MED12|p.Y918C|1|0.63|ENSG00000184634|chrX:71127036-71127036|A/G|missense_variant MED12|p.Y918C|1|0.63|ENSG00000184634|chrX:71127036-71127036|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.786865234375 2 543.735045 1085.45554 NaN NaN NaN NaN NaN NaN NaN 147.3 1 142.61 142.11 143.11 -4.6868 0 0 0 0.23264 1 29222 29222 6.2058 1.8765 1 50024 12121 33256 33277 49048 49048 -0.08377205894453255 VGSDAVTPAY 10 Unmodified _VGSDAVTPAY_ 0 0 0 REV__ENST00000261192.11_1_12:25102184-25102370:-|nuORF REV__ENST00000261192.11_1_12:25102184-25102370:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2634582519531 2 490.24019 978.465826 0.23808 0.00011672 -0.88728 -0.00043498 -0.6492 -0.00031826 490.2397969026054 36.57 0.67515 36.57 36.317 36.993 0 25 18 2 0 0 0 0.67319 1 6795 6795 13.906 3.0821 1 962820 + 50025 20168 33257 33278 49049 49049 -0.024268155817367187 VGSDESTLI 9 Unmodified _VGSDESTLI_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN;VCAN|p.E2431Rfs*10|1|0.16|ENSG00000038427|chr5:83540290-83540291|-/G|frameshift_variant nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.245849609375 2 460.732197 919.449842 -0.038952 -1.7946E-05 0.055954 2.578E-05 0.017002 7.8335E-06 460.73215151378605 57.638 0.79813 57.638 57.307 58.105 0 53 22 3 0 0 0 0.87258 1 11074 11074 4.3292 0 1 8963900 50026 1183 33258 33279 49050 49050 -0.013105218185955891 VGSDGRYFSRT 11 Unmodified _VGSDGRYFSRT_ 0 0 0 nc|ENSG00000154330|Q15124-2|PGM5;ENSG00000154330|ENST00000396396|PGM5 nc|ENSG00000154330|Q15124-2|PGM5 nc|ENSG00000154330|Q15124-2|PGM5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7763061523438 2 622.804551 1243.59455 NaN NaN NaN NaN NaN NaN NaN 171.63 1 166.84 166.34 167.34 -4.7898 0 0 0 0.23087 1 34907 34907 7.609 0.50723 1 50027 5008 33259 33280 49051 49051 -0.017504606187685567 VGSDIRSCPL 10 Unmodified _VGSDIRSCPL_ 0 0 0 ENSG00000198933|ENST00000578982|TBKBP1 ENSG00000198933|ENST00000578982|TBKBP1 ENSG00000198933|ENST00000578982|TBKBP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6923217773438 2 523.768591 1045.52263 NaN NaN NaN NaN NaN NaN NaN 156.67 1 151.88 151.38 152.38 -4.7885 0 0 0 0.18733 1 31155 31155 30.637 3.0077 1 50028 7528 33260 33281 49052 49052 0.0016890870315364737 VGSDTGAD 8 Unmodified _VGSDTGAD_ 0 0 0 REV__ENSG00000262655|ENST00000576479|SPON1 REV__ENSG00000262655|ENST00000576479|SPON1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.1407165527344 2 361.153583 720.292613 NaN NaN NaN NaN NaN NaN NaN 81.725 1 81.725 81.225 82.225 0 0 0 0 0.22934 1 15921 15921 0.12286 0.11459 1 + 50029 19896 33261 33282 49053 49053 -0.07872181638151687 VGSDTGAD 8 Unmodified _VGSDTGAD_ 0 0 0 REV__ENSG00000262655|ENST00000576479|SPON1 REV__ENSG00000262655|ENST00000576479|SPON1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.0256042480469 2 361.153583 720.292613 NaN NaN NaN NaN NaN NaN NaN 46.647 1 43.806 43.306 44.306 -2.8409 0 0 0 0.21486 1 8801 8801 5.7604 0 1 + 50030 19896 33261 33282 49054 49054 -0.07872181638151687 VGSEAEGY 8 Unmodified _VGSEAEGY_ 0 0 0 nc|ENSG00000171560|P02671|FGA nc|ENSG00000171560|P02671|FGA nc|ENSG00000171560|P02671|FGA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 406.17608642578125 2 406.177058 810.339563 NaN NaN NaN NaN NaN NaN NaN 54.544 1 51.66 51.16 52.16 -2.8837 0 0 0 0.21486 1 10414 10414 6.3541 0 1 50031 12462 33262 33283 49055 49055 -0.07319322086993907 VGSEDSVIYI 10 Unmodified _VGSEDSVIYI_ 0 0 0 nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF;nc|ENSG00000105339|A2RUS2-3|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3 nc|ENSG00000105339|A2RUS2|DENND3 nc|ENSG00000105339|A2RUS2|DENND3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2734985351562 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 146.7 1 141.59 141.09 142.09 -5.1108 0 0 0 0.22588 1 28374 28374 10.074 0 1 50032 2298 33263 33284 49056 49056 -0.0031399072172462184 VGSEEDTGVST 11 Unmodified _VGSEEDTGVST_ 0 0 0 REV__RGPD4|p.D1323G|1|0.35|ENSG00000196862|chr2:107871972-107871972|A/G|missense_variant REV__RGPD4|p.D1323G|1|0.35|ENSG00000196862|chr2:107871972-107871972|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2738647460938 2 540.738208 1079.46186 0.2988 0.00016157 -0.23531 -0.00012724 0.063492 3.4333E-05 541.2388977892632 139.44 0.28094 139.44 139.22 139.5 0 10 7 2 0 0 0 0.74417 1 27715 27715 8.7454 0.83525 1 18500000 + 50033 24562 33264 33285 49057 49057 -0.07468949866097319 VGSEEDTGVST 11 Unmodified _VGSEEDTGVST_ 0 0 0 REV__RGPD4|p.D1323G|1|0.35|ENSG00000196862|chr2:107871972-107871972|A/G|missense_variant REV__RGPD4|p.D1323G|1|0.35|ENSG00000196862|chr2:107871972-107871972|A/G|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.738208 1079.46186 0.2988 0.00016157 -0.23531 -0.00012724 0.063492 3.4333E-05 541.2388977892632 139.44 0.28094 139.44 139.22 139.5 0 0 0 NaN 8.7454 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 18500000 + 50034 24562 33264 33285 -0.07468949866097319 VGSELRHKRY 10 Unmodified _VGSELRHKRY_ 0 0 0 REV__MYRIP|p.A151V|1|0.39|ENSG00000170011|chr3:40151167-40151167|C/T|missense_variant REV__MYRIP|p.A151V|1|0.39|ENSG00000170011|chr3:40151167-40151167|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.754150390625 2 622.846553 1243.67855 NaN NaN NaN NaN NaN NaN NaN 143.52 1 138.5 138 139 -5.0261 0 0 0 0.22588 1 27669 27669 6.7232 2.1943 1 + 50035 23907 33265 33286 49058 49058 0.06646115268790709 VGSEPIADPA 10 Unmodified _VGSEPIADPA_ 0 0 0 REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7211608886719 2 478.24019 954.465826 -0.38541 -0.00018432 1.6209 0.0007752 1.2355 0.00059088 478.2408660134969 18.423 0.27971 17.151 17.031 17.31 -1.2722 13 7 3 0 0 0 0.87854 1 2790 2790 2.9952 0 1 1655500 + 50036 18117 33266 33287 49059 49059 -0.013228155817273546 VGSERHRVTY 10 Unmodified _VGSERHRVTY_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-3|VPS13A REV__nc|ENSG00000197969|Q96RL7-3|VPS13A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2755737304688 2 602.315086 1202.61562 NaN NaN NaN NaN NaN NaN NaN 59.725 1 59.725 59.225 60.225 0 0 0 0 0.22588 1 11443 11443 7.2892 0 1 + 50037 19379 33267 33288 49060 49060 0.022415494807546565 VGSETIAHF 9 Unmodified _VGSETIAHF_ 0 0 0 REV__nc|ENSG00000185989|Q14644-2|RASA3 REV__nc|ENSG00000185989|Q14644-2|RASA3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 321.1744384765625 3 320.831025 959.471246 0.32082 0.00010293 -0.61056 -0.00019589 -0.28974 -9.2959E-05 320.8307653092506 30.643 0.80814 28.751 28.522 29.33 -1.8928 43 22 4 0 0 0 0.78757 1 5336 5336 1.1933 0.735 1 8231600 + 50038 19004 33268 33289 49061 49061 -0.010110919992484924 VGSETIAHF 9 Unmodified _VGSETIAHF_ 0 0 0 REV__nc|ENSG00000185989|Q14644-2|RASA3 REV__nc|ENSG00000185989|Q14644-2|RASA3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 320.831025 959.471246 -0.43275 -0.00013884 0.043868 1.4074E-05 -0.38888 -0.00012477 320.8309852159632 28.792 0.84078 28.792 28.18 29.021 0 0.041645 0.00033393 NaN 1.1933 44 23 3 NaN NaN NaN NaN 0 NaN NaN 0 10528000 + 50039 19004 33268 33289 -0.010110919992484924 VGSETIAHF 9 Unmodified _VGSETIAHF_ 0 0 0 REV__nc|ENSG00000185989|Q14644-2|RASA3 REV__nc|ENSG00000185989|Q14644-2|RASA3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 320.831025 959.471246 0.13244 4.2491E-05 -0.45482 -0.00014592 -0.32238 -0.00010343 320.8308262103493 30.815 0.67007 28.698 28.295 28.965 -2.1167 -0.052857 -0.00014606 NaN 1.1933 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 8472000 + 50040 19004 33268 33289 -0.010110919992484924 VGSETIAHF 9 Unmodified _VGSETIAHF_ 0 0 0 REV__nc|ENSG00000185989|Q14644-2|RASA3 REV__nc|ENSG00000185989|Q14644-2|RASA3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 320.831025 959.471246 0.32082 0.00010293 -0.61056 -0.00019589 -0.28974 -9.2959E-05 320.8307653092506 30.643 0.80814 28.751 28.522 29.33 -1.8928 -6.6972E-05 -0.00029595 NaN 1.1933 43 22 4 NaN NaN NaN NaN 0 NaN NaN 0 8231600 + 50041 19004 33268 33289 -0.010110919992484924 VGSETIAHF 9 Unmodified _VGSETIAHF_ 0 0 0 REV__nc|ENSG00000185989|Q14644-2|RASA3 REV__nc|ENSG00000185989|Q14644-2|RASA3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 320.831025 959.471246 -0.16309 -5.2324E-05 -0.18112 -5.8109E-05 -0.34421 -0.00011043 320.83094139102724 30.836 1.5077 28.762 28.22 29.728 -2.0743 0.01128 0.00011738 NaN 1.1933 53 42 2 NaN NaN NaN NaN 0 NaN NaN 0 5802700 + 50042 19004 33268 33289 -0.010110919992484924 VGSEYKVLKE 10 Unmodified _VGSEYKVLKE_ 0 0 0 tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1 tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1 tr|U7T661|U7T661_FUSNUWingedhelix-turn-helixtranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00118PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.333984375 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 50.807 1 47.925 47.425 48.425 -2.8824 0 0 0 0.22588 1 9643 9643 9.3831 3.1773 1 50043 26489 33269 33290 49062 49062 0.05410263957674033 VGSFHCRCP 9 Unmodified _VGSFHCRCP_ 0 0 0 FBN3|p.G2797Afs*4|1|0.38|ENSG00000142449|chr19:8065959-8065959|C/-|frameshift_variant;ENSG00000142449|ENST00000600128|FBN3;FBN3|p.G754Afs*23|1|0.5|ENSG00000142449|chr19:8129065-8129065|G/-|frameshift_variant;FBN3|p.G1016Afs*50|1|0.23|ENSG00000142449|chr19:8123499-8123499|C/-|frameshift_variant;FBN3|p.C1223Afs*11|1|0.23|ENSG00000142449|chr19:8116720-8116720|C/-|frameshift_variant;FBN3|p.G1440Vfs*14|1|0.37|ENSG00000142449|chr19:8110859-8110859|C/-|frameshift_variant;FBN3|p.G1577Vfs*72|2|0.29|ENSG00000142449|chr19:8106191-8106191|C/-|frameshift_variant;FBN3|p.P1958Lfs*128|1|0.24|ENSG00000142449|chr19:8094478-8094478|G/-|frameshift_variant;FBN3|p.T2578Pfs*120|1|0.39|ENSG00000142449|chr19:8073269-8073269|G/-|frameshift_variant FBN3|p.G2797Afs*4|1|0.38|ENSG00000142449|chr19:8065959-8065959|C/-|frameshift_variant FBN3|p.G2797Afs*4|1|0.38|ENSG00000142449|chr19:8065959-8065959|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 503.2219543457031 2 503.223297 1004.43204 NaN NaN NaN NaN NaN NaN NaN 169.19 1 164.26 163.76 164.76 -4.9295 0 0 0 0.19656 1 33393 33393 0.073264 0 1 50044 4418 33270 33291 49063 49063 -0.06999838826118321 VGSFRTLRLC 10 Unmodified _VGSFRTLRLC_ 0 0 0 IFT80|p.H250R|1|0.19|ENSG00000068885|chr3:160356041-160356041|T/C|missense_variant IFT80|p.H250R|1|0.19|ENSG00000068885|chr3:160356041-160356041|T/C|missense_variant IFT80|p.H250R|1|0.19|ENSG00000068885|chr3:160356041-160356041|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3223876953125 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 66.519 1 63.192 62.692 63.692 -3.3268 0 0 0 2.8426 1 12524 12524 0.0013812 0 1 50045 11935 33271 33292 49064 49064 0.058808696194319054 VGSGFVGR 8 Unmodified _VGSGFVGR_ 0 0 0 REV__ENST00000216124.9_1_22:51066128-51066491:-|nuORF REV__ENST00000216124.9_1_22:51066128-51066491:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 389.3456115722656 2 389.713945 777.413337 0.64295 0.00025057 -0.00095742 -3.7312E-07 0.64199 0.00025019 389.7138537087035 27.958 0.97338 26.002 25.563 26.536 -1.9561 64 27 3 0 0 0 1.0254 1 5097 5097 2.3027 0 1 5131700 + 50046 20007 33272 33293 49065 49065 0.015726908659985384 VGSGFVGR 8 Unmodified _VGSGFVGR_ 0 0 0 REV__ENST00000216124.9_1_22:51066128-51066491:-|nuORF REV__ENST00000216124.9_1_22:51066128-51066491:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 389.713945 777.413337 -0.022113 -8.6177E-06 0.65024 0.00025341 0.62812 0.00024479 389.7141158325827 26.114 0.92856 26.114 25.74 26.668 0 0.095788 0.00010452 NaN 2.3027 54 26 3 NaN NaN NaN NaN 0 NaN NaN 0 5974400 + 50047 20007 33272 33293 0.015726908659985384 VGSGFVGR 8 Unmodified _VGSGFVGR_ 0 0 0 REV__ENST00000216124.9_1_22:51066128-51066491:-|nuORF REV__ENST00000216124.9_1_22:51066128-51066491:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 389.713945 777.413337 0.22761 8.8703E-05 0.4325 0.00016855 0.66011 0.00025725 389.71404270626334 27.754 0.9138 25.999 25.617 26.531 -1.7552 -0.019171 -6.5188E-05 NaN 2.3027 60 25 3 NaN NaN NaN NaN 0 NaN NaN 0 5914900 + 50048 20007 33272 33293 0.015726908659985384 VGSGFVGR 8 Unmodified _VGSGFVGR_ 0 0 0 REV__ENST00000216124.9_1_22:51066128-51066491:-|nuORF REV__ENST00000216124.9_1_22:51066128-51066491:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 389.713945 777.413337 -0.36919 -0.00014388 0.98164 0.00038256 0.61246 0.00023868 389.71427018325704 27.954 0.77008 25.957 25.644 26.414 -1.9962 -0.060783 0.00036283 NaN 2.3027 48 21 3 NaN NaN NaN NaN 0 NaN NaN 0 4762800 + 50049 20007 33272 33293 0.015726908659985384 VGSGGDGE 8 Unmodified _VGSGGDGE_ 0 0 0 nc|ENSG00000107897|Q5T8D3-4|ACBD5;nc|ENSG00000107897|Q5T8D3-2|ACBD5;ENSG00000107897|ENST00000396271|ACBD5;nc|ENSG00000107897|Q5T8D3|ACBD5 nc|ENSG00000107897|Q5T8D3-4|ACBD5 nc|ENSG00000107897|Q5T8D3-4|ACBD5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.20220947265625 2 339.140475 676.266398 NaN NaN NaN NaN NaN NaN NaN 37.645 1 37.645 37.145 38.145 0 0 0 0 0.2396 1 6964 6964 0 0 1 50050 2447 33273 33294 49066 49066 -0.08468450809607475 VGSGGGAP 8 Unmodified _VGSGGGAP_ 0 0 0 ENST00000413384.6_1_7:150756719-150759034:+|nuORF ENST00000413384.6_1_7:150756719-150759034:+|nuORF ENST00000413384.6_1_7:150756719-150759034:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2783203125 1 601.294016 600.28674 0.54548 0.00032799 0.27577 0.00016582 0.82125 0.00049381 601.2968385617755 171.65 0.31485 166.74 166.55 166.87 -4.9149 10 8 2 0 0 0 8448 1 34040 34040 1.3295 0 1 3534400 50051 9591 33274 33295 49067 49067 -0.029392353591447318 VGSGGGGG 8 Unmodified _VGSGGGGG_ 0 0 0 REV__nc|ENSG00000151276|Q96QZ7-7|MAGI1 REV__nc|ENSG00000151276|Q96QZ7-7|MAGI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7858276367188 1 547.247066 546.239789 0.12992 7.1099E-05 1.3097 0.00071675 1.4397 0.00078785 547.2457126300267 86.859 0.14092 83.132 83.079 83.22 -3.727 5 3 2 0 0 0 0.89951 1 16998 16998 0.30703 0 1 1121100 + 50052 17055 33275 33296 49068 49068 -0.051480949102824525 VGSGGGGG 8 Unmodified _VGSGGGGG_ 0 0 0 REV__nc|ENSG00000151276|Q96QZ7-7|MAGI1 REV__nc|ENSG00000151276|Q96QZ7-7|MAGI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.783935546875 1 547.247066 546.239789 0.33459 0.0001831 2.4402 0.0013354 2.7748 0.0015185 547.2523125997791 155.21 0.21793 150.43 150.26 150.48 -4.7791 6 5 2 0 0 0 1.0249 1 30856 30856 5.7604 0 1 755200 + 50053 17055 33275 33296 49069 49069 -0.051480949102824525 VGSGGGGG 8 Unmodified _VGSGGGGG_ 0 0 0 REV__nc|ENSG00000151276|Q96QZ7-7|MAGI1 REV__nc|ENSG00000151276|Q96QZ7-7|MAGI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7745971679688 1 547.247066 546.239789 0.39295 0.00021504 -3.9461 -0.0021595 -3.5532 -0.0019445 547.2442481487075 117.24 0.13694 112.66 112.54 112.68 -4.5815 5 3 2 0 0 0 0.89951 1 22491 22491 0 0 1 626970 + 50054 17055 33275 33296 49070 49070 -0.051480949102824525 VGSGGGGG 8 Unmodified _VGSGGGGG_ 0 0 0 REV__nc|ENSG00000151276|Q96QZ7-7|MAGI1 REV__nc|ENSG00000151276|Q96QZ7-7|MAGI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7836303710938 1 547.247066 546.239789 0.14919 8.1645E-05 -1.6649 -0.00091109 -1.5157 -0.00082945 547.241855812513 128.74 0.17281 123.92 123.81 123.98 -4.817 6 4 2 0 0 0 1.0249 1 24690 24690 5.7604 0 1 453510 + 50055 17055 33275 33296 49071 49071 -0.051480949102824525 VGSGKLRR 8 Unmodified _VGSGKLRR_ 0 0 0 REV__ENST00000554493.1_1_14:68129224-68156947:-|nuORF REV__ENST00000554493.1_1_14:68129224-68156947:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2361145019531 2 436.774868 871.535184 0.15419 6.7345E-05 -0.19528 -8.5294E-05 -0.041093 -1.7948E-05 436.77469194322333 178.94 0.31343 174.07 173.81 174.12 -4.8686 13 8 2 0 0 0 1.028 1 35622 35622 0.79363 0.79363 1 656130 + 50056 14278 33276 33297 49072 49072 0.0942773294835888 VGSGKLRR 8 Unmodified _VGSGKLRR_ 0 0 0 REV__ENST00000554493.1_1_14:68129224-68156947:-|nuORF REV__ENST00000554493.1_1_14:68129224-68156947:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 438.2485656738281 2 436.774868 871.535184 0.16529 7.2194E-05 -0.025266 -1.1036E-05 0.14002 6.1159E-05 436.77473821575063 149.11 1.3493 144.04 143.59 144.94 -5.0745 103 37 4 0 0 0 8448 1 28866 28866 0.0082765 0 1 41679000 + 50057 14278 33276 33297 49073 49073 0.0942773294835888 VGSGLPRGRRP 11 Unmodified _VGSGLPRGRRP_ 0 0 0 ZBTB4|p.G685V|1|0.15|ENSG00000174282|chr17:7462928-7462928|C/A|missense_variant ZBTB4|p.G685V|1|0.15|ENSG00000174282|chr17:7462928-7462928|C/A|missense_variant ZBTB4|p.G685V|1|0.15|ENSG00000174282|chr17:7462928-7462928|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3112182617188 2 576.341438 1150.66832 NaN NaN NaN NaN NaN NaN NaN 166.24 1 166.24 165.74 166.74 0 0 0 0 0.224 1 33835 33835 13.042 0 1 50058 26591 33277 33298 49074 49074 0.0990155233423593 VGSGNRKG 8 Unmodified _VGSGNRKG_ 0 0 0 REV__ENSG00000132849|ENST00000642238|PATJ REV__ENSG00000132849|ENST00000642238|PATJ MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.71478271484375 2 387.714476 773.4144 NaN NaN NaN NaN NaN NaN NaN 168.8 1 163.87 163.37 164.37 -4.9295 0 0 0 0.23749 1 33291 33291 0.13829 0.015425 1 + 50059 16137 33278 33299 49075 49075 0.018629052348956066 VGSGPAPV 8 Unmodified _VGSGPAPV_ 0 0 0 ENST00000243077.7_1_12:57578164-57579547:+|nuORF ENST00000243077.7_1_12:57578164-57579547:+|nuORF ENST00000243077.7_1_12:57578164-57579547:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.16998291015625 2 342.189771 682.36499 NaN NaN NaN NaN NaN NaN NaN 99.917 1 95.62 95.12 96.12 -4.297 0 0 0 0.21486 1 19103 19103 2.8892 0 1 50060 8192 33279 33300 49076 49076 0.011101972260917137 VGSGPTRET 9 Unmodified _VGSGPTRET_ 0 0 0 REV__nc|ENSG00000243156|Q7RTP6-2|MICAL3 REV__nc|ENSG00000243156|Q7RTP6-2|MICAL3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 452.3483581542969 2 452.230156 902.445759 NaN NaN NaN NaN NaN NaN NaN 32.205 1 30.178 29.678 30.678 -2.0264 0 0 0 0.23508 1 5580 5580 7.9102 0 1 + 50061 19798 33280 33301 49077 49077 -0.009365665216591879 VGSGSPLSTE 10 Unmodified _VGSGSPLSTE_ 0 0 0 REV__ENSG00000247746|ENST00000500968|USP51 REV__ENSG00000247746|ENST00000500968|USP51 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 467.2269287109375 2 467.229822 932.445091 NaN NaN NaN NaN NaN NaN NaN 71.866 1 68.328 67.828 68.828 -3.5385 0 0 0 2.8426 1 13628 13628 0.26539 0 1 + 50062 19815 33281 33302 49078 49078 -0.02383405961381868 VGSHAACLKKK 11 Unmodified _VGSHAACLKKK_ 0 0 0 REV__ENST00000336440.3_1_14:69259862-69260099:-|nuORF REV__ENST00000336440.3_1_14:69259862-69260099:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.22137451171875 3 381.221859 1140.64375 NaN NaN NaN NaN NaN NaN NaN 152.36 1 147.61 147.11 148.11 -4.7523 0 0 0 0.23698 1 30274 30274 1.3296 0.36737 1 + 50063 20664 33282 33303 49079 49079 0.0790515613646221 VGSHAACLKKK 11 Unmodified _VGSHAACLKKK_ 0 0 0 REV__ENST00000336440.3_1_14:69259862-69260099:-|nuORF REV__ENST00000336440.3_1_14:69259862-69260099:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.22113037109375 3 381.221859 1140.64375 NaN NaN NaN NaN NaN NaN NaN 152.94 1 147.72 147.22 148.22 -5.2209 0 0 0 0.23698 1 29644 29644 1.3296 0.25818 1 + 50064 20664 33282 33303 49080 49080 0.0790515613646221 VGSHFCGTCSP 11 Unmodified _VGSHFCGTCSP_ 0 0 0 REV__ENSG00000167992|ENST00000335613|VWCE REV__ENSG00000167992|ENST00000335613|VWCE MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7899169921875 2 547.723326 1093.4321 NaN NaN NaN NaN NaN NaN NaN 158.35 1 158.35 157.85 158.85 0 0 0 0 0.23324 1 31795 31795 5.7319 0.50118 1 + 50065 17984 33283 33304 49081 49081 -0.11087883616755789 VGSHGRDTRG 10 Unmodified _VGSHGRDTRG_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2807006835938 2 521.262853 1040.51115 0.36028 0.0001878 -2.1364 -0.0011136 -1.7761 -0.00092584 522.2641798738636 145.49 0.31137 140.55 140.38 140.69 -4.9445 12 8 3 0 0 0 0.71097 1 28160 28160 10.074 1.4806 1 5856200 50066 1158 33284 33305 49082 49082 -0.007481522759462678 VGSHSYPAP 9 Unmodified _VGSHSYPAP_ 0 0 0 ENST00000445946.3_1_10:89621264-89621402:-|nuORF ENST00000445946.3_1_10:89621264-89621402:-|nuORF ENST00000445946.3_1_10:89621264-89621402:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2241516113281 2 457.721967 913.429381 -0.16744 -7.6643E-05 0.26588 0.0001217 0.098436 4.5056E-05 457.7220342159175 58.684 0.77122 55.773 55.407 56.179 -2.9105 39 21 2 0 0 0 0.52414 1 11331 11331 18.135 1.1927 1 1422100 50067 9938 33285 33306 49083 49083 -0.030796476877753776 VGSHVWYL 8 Unmodified _VGSHVWYL_ 0 0 0 REV__ENST00000531469.5_1_10:126727678-126799578:-|nuORF REV__ENST00000531469.5_1_10:126727678-126799578:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 480.74871826171875 2 480.750527 959.486502 NaN NaN NaN NaN NaN NaN NaN 146.59 1 141.48 140.98 141.98 -5.1108 0 0 0 0.20378 1 28353 28353 22.453 6.6844 1 + 50068 22770 33286 33307 49084 49084 0.0051381958861611565 VGSIAKYLI 9 Unmodified _VGSIAKYLI_ 0 0 0 REV__nc|ENSG00000111783|Q33E94-4|RFX4 REV__nc|ENSG00000111783|Q33E94-4|RFX4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7704162597656 2 482.29731 962.580068 -0.04373 -2.1091E-05 0.17896 8.6311E-05 0.13523 6.522E-05 482.2973610392705 26.605 0.58123 24.683 24.402 24.984 -1.9222 36 16 3 0 0 0 0.87258 1 4398 4398 1.8442 0 1 5252400 + 50069 15262 33287 33308 49085 49085 0.09728118971031563 VGSIEEEMSVT 11 Unmodified _VGSIEEEMSVT_ 0 0 0 REV__ENST00000521903.5_1_8:124361561-124413087:-|nuORF REV__ENST00000521903.5_1_8:124361561-124413087:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.258056640625 2 590.773736 1179.53292 0.53673 0.00031709 -1.6446 -0.00097157 -1.1078 -0.00065449 590.7725041272104 148.89 0.17026 143.74 143.65 143.82 -5.1557 5 4 2 0 0 0 0.95337 1 28828 28828 9.3831 0 1 1186700 + 50070 22656 33288 33309 49086 49086 -0.049665731529330515 VGSILVATF 9 Unmodified _VGSILVATF_ 0 0 0 REV__ENSG00000012174|ENST00000379484|MBTPS2 REV__ENSG00000012174|ENST00000379484|MBTPS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7695007324219 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 150.76 1 145.56 145.06 146.06 -5.1994 0 0 0 0.23508 1 29216 29216 8.5933 0 1 + 50071 13942 33289 33310 49087 49087 0.0656785704561571 VGSIQFLY 8 Unmodified _VGSIQFLY_ 0 0 0 REV__ENST00000489406.1_1_22:19455337-19466647:-|nuORF REV__ENST00000489406.1_1_22:19455337-19466647:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25787353515625 2 463.752736 925.490919 0.32237 0.0001495 -0.17946 -8.3225E-05 0.14291 6.6277E-05 463.7525427644963 90.136 1.5501 86.091 85.381 86.931 -4.0443 122 43 4 0 0 0 0.64227 1 17144 17144 19.439 0 1 21419000 + 50072 22289 33290 33311 49088 49088 0.025192840115209947 VGSITTGIDP 10 Unmodified _VGSITTGIDP_ 0 0 0 ENSG00000116147|ENST00000367674|TNR ENSG00000116147|ENST00000367674|TNR ENSG00000116147|ENST00000367674|TNR MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7780456542969 2 480.25584 958.497126 -0.028374 -1.3627E-05 -0.019293 -9.2655E-06 -0.047667 -2.2892E-05 480.25581326828075 33.92 0.83855 33.92 33.474 34.312 0 81 23 4 0 0 0 0.48196 1 6241 6241 0.26539 0 1 112050000 50073 2911 33291 33312 49089 49089 0.016217574523693656 VGSIWKYFS 9 Unmodified _VGSIWKYFS_ 0 0 0 ENST00000515072.1_1_4:10454400-10456238:-|nuORF ENST00000515072.1_1_4:10454400-10456238:-|nuORF ENST00000515072.1_1_4:10454400-10456238:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7844848632812 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 56.472 1 56.472 55.972 56.972 0 0 0 0 0.22621 1 10787 10787 15.847 1.0089 1 50074 10781 33292 33313 49090 49090 0.01522644448596111 VGSIWKYFS 9 Unmodified _VGSIWKYFS_ 0 0 0 ENST00000515072.1_1_4:10454400-10456238:-|nuORF ENST00000515072.1_1_4:10454400-10456238:-|nuORF ENST00000515072.1_1_4:10454400-10456238:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7850952148438 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 11.926 1 10.797 10.297 11.297 -1.1293 0 0 0 0.23508 1 1440 1440 2.0598 0.40713 1 50075 10781 33292 33313 49091 49091 0.01522644448596111 VGSKEEQWGV 10 Unmodified _VGSKEEQWGV_ 0 0 0 REV__ENST00000495552.1_1_3:52873747-52873855:-|nuORF REV__ENST00000495552.1_1_3:52873747-52873855:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 373.135498046875 3 373.520739 1117.54039 0.19844 7.4121E-05 -0.3905 -0.00014586 -0.19206 -7.1738E-05 373.5205380583411 34.264 0.58805 32.118 31.841 32.429 -2.1468 47 16 4 0 0 0 0.91149 1 5991 5991 1.9064 1.2795 1 7956400 + 50076 22378 33293 33314 49092 49092 -0.013680527703400003 VGSKEEQWGV 10 Unmodified _VGSKEEQWGV_ 0 0 0 REV__ENST00000495552.1_1_3:52873747-52873855:-|nuORF REV__ENST00000495552.1_1_3:52873747-52873855:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 373.520739 1117.54039 -0.15746 -5.8815E-05 0.16496 6.1617E-05 0.007501 2.8018E-06 373.52074080060726 32.167 0.48611 32.167 31.913 32.399 0 0.03616 0.0001332 NaN 1.9064 33 13 3 NaN NaN NaN NaN 0 NaN NaN 0 8760700 + 50077 22378 33293 33314 -0.013680527703400003 VGSKEEQWGV 10 Unmodified _VGSKEEQWGV_ 0 0 0 REV__ENST00000495552.1_1_3:52873747-52873855:-|nuORF REV__ENST00000495552.1_1_3:52873747-52873855:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 373.520739 1117.54039 -0.39233 -0.00014654 0.29018 0.00010839 -0.10215 -3.8155E-05 373.5208287314714 34.451 0.58986 32.134 31.84 32.43 -2.3175 0.0025153 0.00027351 NaN 1.9064 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 8202700 + 50078 22378 33293 33314 -0.013680527703400003 VGSKEEQWGV 10 Unmodified _VGSKEEQWGV_ 0 0 0 REV__ENST00000495552.1_1_3:52873747-52873855:-|nuORF REV__ENST00000495552.1_1_3:52873747-52873855:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 373.520739 1117.54039 -0.31965 -0.0001194 0.067236 2.5114E-05 -0.25242 -9.4282E-05 373.52071195791973 34.322 0.69967 32.106 31.846 32.545 -2.2158 -0.025147 2.3693E-05 NaN 1.9064 52 19 4 NaN NaN NaN NaN 0 NaN NaN 0 7297200 + 50079 22378 33293 33314 -0.013680527703400003 VGSKEVILPI 10 Unmodified _VGSKEVILPI_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.8387756347656 3 352.221742 1053.6434 0.19573 6.894E-05 1.806 0.0006361 2.0017 0.00070504 352.22228804667276 27.13 0.77184 25.495 25.212 25.984 -1.6347 30 21 2 0 0 0 0.75587 1 4483 4483 3.8763 1.3778 1 2051800 50080 5126;11929 33294 33315 49093 49093 0.11872059688289482 VGSKEVILPI 10 Unmodified _VGSKEVILPI_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 352.221742 1053.6434 0.68446 0.00024108 0.81218 0.00028607 1.4966 0.00052715 352.22196812165447 27.188 0.71071 25.406 25.165 25.875 -1.7821 -0.044575 -0.00051981 NaN 3.8763 26 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3425600 50081 5126;11929 33294 33315 0.11872059688289482 VGSKGDRKKL 10 Unmodified _VGSKGDRKKL_ 0 0 0 nc|ENSG00000095627|Q9BXT4-2|TDRD1;ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1;TDRD1|p.L142Tfs*13|1|0.26|ENSG00000095627|chr10:114199204-114199205|-/A|frameshift_variant nc|ENSG00000095627|Q9BXT4-2|TDRD1 nc|ENSG00000095627|Q9BXT4-2|TDRD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.2239990234375 3 363.224257 1086.65094 NaN NaN NaN NaN NaN NaN NaN 137.52 1 137.52 137.02 138.02 0 0 0 0 0.22588 1 27278 27278 0.15932 0 1 50082 1865 33295 33316 49094 49094 0.11108212008548435 VGSKGKGS 8 Unmodified _VGSKGKGS_ 0 0 0 nc|ENSG00000165623|P07492-3|GRP nc|ENSG00000165623|P07492-3|GRP nc|ENSG00000165623|P07492-3|GRP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20465087890625 2 360.205953 718.397353 NaN NaN NaN NaN NaN NaN NaN 18.089 1 16.779 16.279 17.279 -1.3109 0 0 0 0.2396 1 2930 2930 0.12286 0 1 50083 12434 33296 33317 49095 49095 0.026889846290941932 VGSKGKGS 8 Unmodified _VGSKGKGS_ 0 0 0 nc|ENSG00000165623|P07492-3|GRP nc|ENSG00000165623|P07492-3|GRP nc|ENSG00000165623|P07492-3|GRP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.211669921875 2 360.205953 718.397353 NaN NaN NaN NaN NaN NaN NaN 80.673 1 76.833 76.333 77.333 -3.8392 0 0 0 0.2396 1 15314 15314 0 0 1 50084 12434 33296 33317 49096 49096 0.026889846290941932 VGSKGKGS 8 Unmodified _VGSKGKGS_ 0 0 0 nc|ENSG00000165623|P07492-3|GRP nc|ENSG00000165623|P07492-3|GRP nc|ENSG00000165623|P07492-3|GRP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2052307128906 2 360.205953 718.397353 NaN NaN NaN NaN NaN NaN NaN 80.755 1 76.916 76.416 77.416 -3.8392 0 0 0 0.2396 1 15330 15330 0 0 1 50085 12434 33296 33317 49097 49097 0.026889846290941932 VGSKKTIVQKT 11 Unmodified _VGSKKTIVQKT_ 0 0 0 REV__nc|ENSG00000151422|P16591-3|FER REV__nc|ENSG00000151422|P16591-3|FER MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 594.8997192382812 2 594.869163 1187.72377 NaN NaN NaN NaN NaN NaN NaN 165.69 1 160.74 160.24 161.24 -4.9484 0 0 0 0.224 1 32394 32394 13.042 0.80181 1 + 50086 17065 33297 33318 49098 49098 0.1374192101131939 VGSKRLGP 8 Unmodified _VGSKRLGP_ 0 0 0 REV__nc|ENSG00000101104|Q4VXU2-2|PABPC1L REV__nc|ENSG00000101104|Q4VXU2-2|PABPC1L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 407.25177001953125 2 407.250695 812.486836 NaN NaN NaN NaN NaN NaN NaN 155.13 1 149.84 149.34 150.34 -5.2854 0 0 0 0.21486 1 30088 30088 0.79363 0 1 + 50087 14761 33298 33319 49099 49099 0.07309239308472115 VGSKRRQT 8 Unmodified _VGSKRRQT_ 0 0 0 FBXW7|p.R14Q|2|0.31|ENSG00000109670|chr4:152411763-152411763|C/T|missense_variant FBXW7|p.R14Q|2|0.31|ENSG00000109670|chr4:152411763-152411763|C/T|missense_variant FBXW7|p.R14Q|2|0.31|ENSG00000109670|chr4:152411763-152411763|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.21795654296875 3 311.185914 930.535912 NaN NaN NaN NaN NaN NaN NaN 12.769 1 11.648 11.148 12.148 -1.1206 0 0 0 0.21486 1 1551 1551 0.45834 0 1 50088 11808 33299 33320 49100 49100 0.06786527597421355 VGSKSLNG 8 Unmodified _VGSKSLNG_ 0 0 0 REV__MLIP|p.E348Rfs*6|1|0.27|ENSG00000146147|chr6:54202155-54202156|-/A|frameshift_variant REV__MLIP|p.E348Rfs*6|1|0.27|ENSG00000146147|chr6:54202155-54202156|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21221923828125 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 104.68 1 100.63 100.13 101.13 -4.0543 0 0 0 0.23749 1 20132 20132 0.12286 0 1 + 50089 16871 33300 33321 49101 49101 0.018129672835243582 VGSLDLGLFV 10 Unmodified _VGSLDLGLFV_ 0 0 0 REV__ADIPOR1|p.G275D|1|0.17|ENSG00000159346|chr1:202942200-202942200|C/T|missense_variant REV__ADIPOR1|p.G275D|1|0.17|ENSG00000159346|chr1:202942200-202942200|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 509.7798767089844 2 510.292225 1018.5699 0.36447 0.00018598 -2.0502 -0.0010462 -1.6857 -0.0008602 510.2908431351311 157.52 0.53133 152.25 151.87 152.4 -5.2712 22 14 2 0 0 0 1.1246 1 30584 30584 0.26539 0 1 1464600 + 50090 12969 33301 33322 49102 49102 0.061355112458159056 VGSLDLNVDL 10 Unmodified _VGSLDLNVDL_ 0 0 0 REV__ENST00000554026.5_1_14:76548780-76549917:+|nuORF REV__ENST00000554026.5_1_14:76548780-76549917:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6985473632812 2 522.782222 1043.54989 -0.017506 -9.152E-06 0.37893 0.0001981 0.36143 0.00018895 522.7821892781318 161.3 0.80391 156.51 156.11 156.91 -4.7952 48 22 3 0 0 0 0.6817 1 32126 32126 13.042 1.4022 1 3666900 + 50091 22969 33302 33323 49103 49103 0.029857155152058112 VGSLFAHI 8 Unmodified _VGSLFAHI_ 0 0 0 REV__ENSG00000218819|ENST00000405799|TDRD15 REV__ENSG00000218819|ENST00000405799|TDRD15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4153442382812 1 843.472315 842.465038 0.42738 0.00036048 -2.1169 -0.0017855 -1.6895 -0.0014251 843.470324447507 176.29 0.10538 171.42 171.37 171.47 -4.8739 4 2 2 0 0 0 0.88047 1 35072 35072 0.79363 0 1 4589100 + 50092 19704 33303 33324 49104 49104 0.03750434559879068 VGSLGCAP 8 Unmodified _VGSLGCAP_ 0 0 0 ENST00000587009.5_1_19:4446812-4447750:-|nuORF;ENST00000588238.1_1_19:4447432-4447750:-|nuORF ENST00000587009.5_1_19:4446812-4447750:-|nuORF ENST00000587009.5_1_19:4446812-4447750:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 352.1822204589844 2 352.175807 702.337061 NaN NaN NaN NaN NaN NaN NaN 69.913 1 66.733 66.233 67.233 -3.1796 0 0 0 0.21486 1 13599 13599 2.8892 0 1 50093 11556 33304 33325 49105 49105 -0.02601449025655711 VGSLGCAP 8 Unmodified _VGSLGCAP_ 0 0 0 ENST00000587009.5_1_19:4446812-4447750:-|nuORF;ENST00000588238.1_1_19:4447432-4447750:-|nuORF ENST00000587009.5_1_19:4446812-4447750:-|nuORF ENST00000587009.5_1_19:4446812-4447750:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 352.1833190917969 2 352.175807 702.337061 NaN NaN NaN NaN NaN NaN NaN 99.617 1 95.66 95.16 96.16 -3.9564 0 0 0 0.21486 1 19129 19129 2.8892 0 1 50094 11556 33304 33325 49106 49106 -0.02601449025655711 VGSLGFIG 8 Unmodified _VGSLGFIG_ 0 0 0 REV__ENST00000376896.7_1_9:77112809-77245209:+|nuORF REV__ENST00000376896.7_1_9:77112809-77245209:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2126159667969 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 69.949 1 66.482 65.982 66.982 -3.467 0 0 0 0.23749 1 13237 13237 0.0082765 0 1 + 50095 21082 33305 33326 49107 49107 0.02767056777236121 VGSLGPGY 8 Unmodified _VGSLGPGY_ 0 0 0 IGSF8|p.R377Q|1|0.31|ENSG00000162729|chr1:160093106-160093106|C/T|missense_variant;nc|ENSG00000162729|Q969P0-2|IGSF8;nc|ENSG00000162729|Q969P0-3|IGSF8;IGSF8|p.E456Gfs*84|1|0.37|ENSG00000162729|chr1:160092641-160092642|-/C|frameshift_variant;ENSG00000162729|ENST00000314485|IGSF8 IGSF8|p.R377Q|1|0.31|ENSG00000162729|chr1:160093106-160093106|C/T|missense_variant IGSF8|p.R377Q|1|0.31|ENSG00000162729|chr1:160093106-160093106|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2143859863281 2 375.195054 748.375555 -0.36173 -0.00013572 0.43095 0.00016169 0.069225 2.5973E-05 375.19518108307363 35.284 0.52003 33.007 32.761 33.281 -2.2766 30 14 3 0 0 0 8448 1 6165 6165 0.62683 0 1 1768400 50096 5360 33306 33327 49108 49108 -0.008698201194761168 VGSLKKFYE 9 Unmodified _VGSLKKFYE_ 0 0 0 nc|ENSG00000197181|Q8TC59-2|PIWIL2;ENSG00000197181|ENST00000356766|PIWIL2 nc|ENSG00000197181|Q8TC59-2|PIWIL2 nc|ENSG00000197181|Q8TC59-2|PIWIL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.56024169921875 3 357.534209 1069.5808 NaN NaN NaN NaN NaN NaN NaN 27.936 1 26.181 25.681 26.681 -1.7552 0 0 0 0.070848 1 4696 4696 43.772 5.1576 1 50097 7340 33307 33328 49109 49109 0.04878913620086678 VGSLLFLSSQV 11 Unmodified _VGSLLFLSSQV_ 0 0 0 ENST00000379297.5_1_X:23722013-23724857:-|nuORF;nc|ENSG00000123130|Q9Y305-3|ACOT9;nc|ENSG00000123130|Q9Y305-2|ACOT9;nc|ENSG00000123130|Q9Y305|ACOT9;ENSG00000123130|ENST00000379303|ACOT9 ENST00000379297.5_1_X:23722013-23724857:-|nuORF ENST00000379297.5_1_X:23722013-23724857:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 384.892822265625 3 383.888651 1148.64412 -0.11792 -4.5266E-05 1.2764 0.00048999 1.1585 0.00044472 383.8891116086852 130 1.0748 130 129.33 130.41 0 75 30 3 0 0 0 0.80486 1 25600 25600 1.2148 0.10508 1 15505000 50098 3252 33308 33329 49110 49110 0.07574854337326542 VGSLLFLSSQV 11 Unmodified _VGSLLFLSSQV_ 0 0 0 ENST00000379297.5_1_X:23722013-23724857:-|nuORF;nc|ENSG00000123130|Q9Y305-3|ACOT9;nc|ENSG00000123130|Q9Y305-2|ACOT9;nc|ENSG00000123130|Q9Y305|ACOT9;ENSG00000123130|ENST00000379303|ACOT9 ENST00000379297.5_1_X:23722013-23724857:-|nuORF ENST00000379297.5_1_X:23722013-23724857:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 383.888651 1148.64412 -0.11792 -4.5266E-05 1.2764 0.00048999 1.1585 0.00044472 383.8891116086852 130 1.0748 130 129.33 130.41 0 0 0 NaN 1.2148 75 30 3 NaN NaN NaN NaN 0 NaN NaN 0 15505000 50099 3252 33308 33329 0.07574854337326542 VGSLLKWA 8 Unmodified _VGSLLKWA_ 0 0 0 REV__B9D2|p.C97Lfs*6|1|0.33|ENSG00000123810|chr19:41354938-41354939|-/A|frameshift_variant REV__B9D2|p.C97Lfs*6|1|0.33|ENSG00000123810|chr19:41354938-41354939|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2152404785156 2 437.263271 872.511988 NaN NaN NaN NaN NaN NaN NaN 96.355 1 92.12 91.62 92.62 -4.2348 0 0 0 0.21486 1 18397 18397 5.7604 0 1 + 50100 13173 33309 33330 49111 49111 0.07063294111026153 VGSLLLTA 8 Unmodified _VGSLLLTA_ 0 0 0 ENSG00000188822|ENST00000374472|CNR2 ENSG00000188822|ENST00000374472|CNR2 ENSG00000188822|ENST00000374472|CNR2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.241943359375 2 387.242004 772.469455 NaN NaN NaN NaN NaN NaN NaN 66.24 1 62.957 62.457 63.457 -3.2832 0 0 0 0.21486 1 12467 12467 9.3474 0 1 50101 7200 33310 33331 49112 49112 0.07411898982786624 VGSLLQWL 8 Unmodified _VGSLLQWL_ 0 0 0 REV__ALS2CL|p.R134W|1|0.26|ENSG00000178038|chr3:46687117-46687117|G/A|missense_variant REV__ALS2CL|p.R134W|1|0.26|ENSG00000178038|chr3:46687117-46687117|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2292175292969 2 458.268553 914.522553 NaN NaN NaN NaN NaN NaN NaN 142.2 1 137.18 136.68 137.68 -5.0261 0 0 0 0.21323 1 27402 27402 14.582 2.0501 1 + 50102 13016 33311 33332 49113 49113 0.06187276765456318 VGSLPLLP 8 Unmodified _VGSLPLLP_ 0 0 0 CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 398.2533264160156 2 398.252372 794.49019 NaN NaN NaN NaN NaN NaN NaN 173.86 1 168.97 168.47 169.47 -4.8916 0 0 0 0.21486 1 34584 34584 2.5775 0 1 50103 560 33312 33333 49114 49114 0.08472489362452507 VGSLSPDR 8 Unmodified _VGSLSPDR_ 0 0 0 ENST00000344651.4_1_12:121159414-121159822:+|nuORF ENST00000344651.4_1_12:121159414-121159822:+|nuORF ENST00000344651.4_1_12:121159414-121159822:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 415.1930847167969 2 415.721967 829.429381 0.37652 0.00015653 -0.756 -0.00031429 -0.37948 -0.00015776 415.72161811704086 45.917 0.72899 45.917 45.621 46.35 0 48 20 3 0 0 0 0.93477 1 8609 8609 12.532 3.1841 1 6539300 50104 8891 33313 33334 49115 49115 0.00784352312223291 VGSLSPDR 8 Unmodified _VGSLSPDR_ 0 0 0 ENST00000344651.4_1_12:121159414-121159822:+|nuORF ENST00000344651.4_1_12:121159414-121159822:+|nuORF ENST00000344651.4_1_12:121159414-121159822:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 415.721967 829.429381 -0.26063 -0.00010835 0.094465 3.9271E-05 -0.16616 -6.9077E-05 415.7219667087986 48.702 0.76019 45.833 45.487 46.247 -2.869 -0.072679 0.00026605 NaN 18.135 47 21 3 NaN NaN NaN NaN 0 NaN NaN 0 7325200 50105 8891 33313 33334 0.00784352312223291 VGSLSPDR 8 Unmodified _VGSLSPDR_ 0 0 0 ENST00000344651.4_1_12:121159414-121159822:+|nuORF ENST00000344651.4_1_12:121159414-121159822:+|nuORF ENST00000344651.4_1_12:121159414-121159822:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 415.721967 829.429381 -0.0032404 -1.3471E-06 -0.35836 -0.00014898 -0.3616 -0.00015033 415.72178628274116 48.945 0.66127 45.946 45.581 46.242 -2.999 0.041182 -0.00011045 NaN 18.135 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 6638300 50106 8891 33313 33334 0.00784352312223291 VGSLSPDR 8 Unmodified _VGSLSPDR_ 0 0 0 ENST00000344651.4_1_12:121159414-121159822:+|nuORF ENST00000344651.4_1_12:121159414-121159822:+|nuORF ENST00000344651.4_1_12:121159414-121159822:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 415.721967 829.429381 -0.44583 -0.00018534 0.029435 1.2237E-05 -0.41639 -0.0001731 415.72199323608737 48.931 0.62012 45.925 45.622 46.242 -3.0068 0.019373 0.00021198 NaN 18.135 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4835800 50107 8891 33313 33334 0.00784352312223291 VGSLSYIALPH 11 Unmodified _VGSLSYIALPH_ 0 0 0 PLXNC1|p.L809*|1|0.11|ENSG00000136040|chr12:94247936-94247936|T/-|frameshift_variant;PLXNC1|p.D901Rfs*10|1|0.03|ENSG00000136040|chr12:94248333-94248334|-/G|frameshift_variant;PLXNC1|p.I1400Sfs*21|1|0.37|ENSG00000136040|chr12:94298749-94298749|A/-|frameshift_variant;ENSG00000136040|ENST00000258526|PLXNC1 PLXNC1|p.L809*|1|0.11|ENSG00000136040|chr12:94247936-94247936|T/-|frameshift_variant PLXNC1|p.L809*|1|0.11|ENSG00000136040|chr12:94247936-94247936|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 578.8915405273438 2 578.821681 1155.62881 NaN NaN NaN NaN NaN NaN NaN 18.674 1 17.363 16.863 17.863 -1.3109 0 0 0 0.23264 1 3046 3046 6.2058 0.47393 1 50108 3979 33314 33335 49116 49116 0.05721987540118789 VGSLVTSG 8 Unmodified _VGSLVTSG_ 0 0 0 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2158508300781 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 92.199 1 92.199 91.699 92.699 0 0 0 0 0.21486 1 18026 18026 5.7604 0.52976 1 50109 2684 33315 33336 49117 49117 0.015661625349480346 VGSLVTSG 8 Unmodified _VGSLVTSG_ 0 0 0 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018737792969 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 95.607 1 91.557 91.057 92.057 -4.0496 0 0 0 0.2074 1 18741 18741 19.439 4.8573 1 50110 2684 33315 33336 49118 49118 0.015661625349480346 VGSNMDHYY 9 Unmodified _VGSNMDHYY_ 0 0 0 REV__nc|ENSG00000147862|O00712-4|NFIB REV__nc|ENSG00000147862|O00712-4|NFIB MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.779541015625 2 543.221474 1084.42839 0.33903 0.00018417 -1.0313 -0.00056025 -0.69231 -0.00037608 543.7216491424433 144.88 0.24487 144.88 144.79 145.03 0 8 6 2 0 0 0 0.73309 1 28953 28953 4.756 0 1 1093100 + 50111 24089 33316 33337 49119 49119 -0.11044230118977794 VGSPAAWA 8 Unmodified _VGSPAAWA_ 0 0 0 REV__KRT17|p.G22Afs*93|1|0.4|ENSG00000128422|chr17:41624445-41624445|C/-|frameshift_variant REV__KRT17|p.G22Afs*93|1|0.4|ENSG00000128422|chr17:41624445-41624445|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 758.4032592773438 1 758.383165 757.375889 0.70186 0.00053228 -1.8875 -0.0014314 -1.1856 -0.00089915 758.3851583683785 167.37 0.17261 162.48 162.36 162.53 -4.8916 5 4 2 0 0 0 8448 1 32916 32916 0 0 1 17123000 + 50112 23736 33317 33338 49120 49120 -0.012504003996355095 VGSPAAWA 8 Unmodified _VGSPAAWA_ 0 0 0 REV__KRT17|p.G22Afs*93|1|0.4|ENSG00000128422|chr17:41624445-41624445|C/-|frameshift_variant REV__KRT17|p.G22Afs*93|1|0.4|ENSG00000128422|chr17:41624445-41624445|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 758.383165 757.375889 0.83279 0.00063157 -5.1209 -0.0038836 -4.2881 -0.003252 758.3816084846045 167.48 0.13857 162.69 162.59 162.73 -4.7898 0.10595 -0.00084538 NaN 0 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 18116000 + 50113 23736 33317 33338 -0.012504003996355095 VGSPAAWA 8 Unmodified _VGSPAAWA_ 0 0 0 REV__KRT17|p.G22Afs*93|1|0.4|ENSG00000128422|chr17:41624445-41624445|C/-|frameshift_variant REV__KRT17|p.G22Afs*93|1|0.4|ENSG00000128422|chr17:41624445-41624445|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 758.383165 757.375889 0.70186 0.00053228 -1.8875 -0.0014314 -1.1856 -0.00089915 758.3851583683785 167.37 0.17261 162.48 162.36 162.53 -4.8916 -0.10595 0.0016068 NaN 0 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 17123000 + 50114 23736 33317 33338 -0.012504003996355095 VGSPFAKDF 9 Unmodified _VGSPFAKDF_ 0 0 0 ENSG00000140521|ENST00000268124|POLG ENSG00000140521|ENST00000268124|POLG ENSG00000140521|ENST00000268124|POLG MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1704406738281 3 323.167637 966.481082 NaN NaN NaN NaN NaN NaN NaN 74.408 1 70.732 70.232 71.232 -3.6764 0 0 0 0.23508 1 14069 14069 1.1933 0 1 50115 4307 33318 33339 49121 49121 -0.0034990399386742865 VGSPGPAG 8 Unmodified _VGSPGPAG_ 0 0 0 CON__P04258 CON__P04258 CON__P04258 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 321.1820983886719 2 321.166296 640.31804 NaN NaN NaN NaN NaN NaN NaN 16.454 1 15.233 14.733 15.733 -1.2219 0 0 0 0.21486 1 2367 2367 0.79363 0 1 + 50116 657 33319 33340 49122 49122 -0.016506623250620578 VGSPGPAG 8 Unmodified _VGSPGPAG_ 0 0 0 CON__P04258 CON__P04258 CON__P04258 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.16534423828125 2 321.166296 640.31804 NaN NaN NaN NaN NaN NaN NaN 75.174 1 71.541 71.041 72.041 -3.6337 0 0 0 0.21486 1 14290 14290 0.79363 0 1 + 50117 657 33319 33340 49123 49123 -0.016506623250620578 VGSPLFSLS 9 Unmodified _VGSPLFSLS_ 0 0 0 REV__TLR7|p.F670Lfs*8|1|0.32|ENSG00000196664|chrX:12887514-12887514|T/-|frameshift_variant REV__TLR7|p.F670Lfs*8|1|0.32|ENSG00000196664|chrX:12887514-12887514|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.751953125 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 138.62 1 138.62 138.12 139.12 0 0 0 0 0.20155 1 27530 27530 23.148 6.2061 1 + 50118 19271 33320 33341 49124 49124 0.029309801489034726 VGSPLLPRSR 10 Unmodified _VGSPLLPRSR_ 0 0 0 ENSG00000125998|ENST00000374408|FAM83C ENSG00000125998|ENST00000374408|FAM83C ENSG00000125998|ENST00000374408|FAM83C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.2198181152344 3 361.220735 1080.64038 NaN NaN NaN NaN NaN NaN NaN 101.97 1 101.97 101.47 102.47 0 0 0 0 0.22588 1 20024 20024 1.5923 0.13716 1 50119 3410 33321 33342 49125 49125 0.10328229354126961 VGSPLLPRSR 10 Unmodified _VGSPLLPRSR_ 0 0 0 ENSG00000125998|ENST00000374408|FAM83C ENSG00000125998|ENST00000374408|FAM83C ENSG00000125998|ENST00000374408|FAM83C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.22161865234375 3 361.220735 1080.64038 NaN NaN NaN NaN NaN NaN NaN 103.75 1 103.75 103.25 104.25 0 0 0 0 0.22588 1 20389 20389 0.62683 0 1 50120 3410 33321 33342 49126 49126 0.10328229354126961 VGSPLLPRSR 10 Unmodified _VGSPLLPRSR_ 0 0 0 ENSG00000125998|ENST00000374408|FAM83C ENSG00000125998|ENST00000374408|FAM83C ENSG00000125998|ENST00000374408|FAM83C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 361.2202453613281 3 361.220735 1080.64038 NaN NaN NaN NaN NaN NaN NaN 105.21 1 100.83 100.33 101.33 -4.3764 0 0 0 0.22588 1 20169 20169 0.62683 0 1 50121 3410 33321 33342 49127 49127 0.10328229354126961 VGSPLSSVMS 10 Unmodified _VGSPLSSVMS_ 0 0 0 IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant;IGSF9B|p.T1083Hfs*72|2|0.42|ENSG00000080854|chr11:133920478-133920479|-/G|frameshift_variant;nc|ENSG00000080854|Q9UPX0|IGSF9B;ENSG00000080854|ENST00000533871|IGSF9B IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78082275390625 2 482.244418 962.474282 -0.044102 -2.1268E-05 0.43645 0.00021047 0.39234 0.00018921 482.2444154250533 43.296 0.21815 40.577 40.52 40.738 -2.7191 9 5 2 0 0 0 0.84281 1 8117 8117 19.257 0 1 1543200 50122 11940 33322 33343 49128 49128 -0.00845584936735122 VGSQLEVLVHV 11 Unmodified _VGSQLEVLVHV_ 0 0 0 NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant;ENSG00000144815|ENST00000273347|NXPE3 NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2607421875 2 590.340238 1178.66592 NaN NaN NaN NaN NaN NaN NaN 170.97 1 166.18 165.68 166.68 -4.7898 0 0 0 0.12979 1 34733 34733 31.268 3.6395 1 50123 4579 33323 33344 49129 49129 0.08373659085873442 VGSQPLLLV 9 Unmodified _VGSQPLLLV_ 0 0 0 nc|ENSG00000188580|Q5VXU1-2|NKAIN2 nc|ENSG00000188580|Q5VXU1-2|NKAIN2 nc|ENSG00000188580|Q5VXU1-2|NKAIN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 309.1693420410156 3 309.195416 924.564418 NaN NaN NaN NaN NaN NaN NaN 50.04 1 47.159 46.659 47.659 -2.8811 0 0 0 0.23508 1 9488 9488 0.26902 0 1 50124 12531 33324 33345 49130 49130 0.09911832454008618 VGSRDDERF 9 Unmodified _VGSRDDERF_ 0 0 0 tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1 tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1 tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2596435546875 2 540.757069 1079.49959 0.32386 0.00017513 3.354 0.0018137 3.6779 0.0019888 540.7600358684284 152.27 0.21742 147.52 147.39 147.6 -4.7523 6 5 2 0 0 0 0.6329 1 30251 30251 10.824 3.5347 1 992460 50125 26004 33325 33346 49131 49131 -0.03698394089951762 VGSRDDERF 9 Unmodified _VGSRDDERF_ 0 0 0 tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1 tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1 tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2807006835938 2 540.757069 1079.49959 0.24511 0.00013255 4.1004 0.0022173 4.3455 0.0023499 540.7595105376303 154.99 0.28937 149.7 149.57 149.86 -5.2854 9 7 2 0 0 0 0.6329 1 30068 30068 10.824 2.2306 1 1115300 50126 26004 33325 33346 49132 49132 -0.03698394089951762 VGSRHNRK 8 Unmodified _VGSRHNRK_ 0 0 0 REV__ENSG00000047621|ENST00000261250|C12orf4 REV__ENSG00000047621|ENST00000261250|C12orf4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.8751525878906 3 318.517775 952.531495 NaN NaN NaN NaN NaN NaN NaN 19.67 1 19.67 19.17 20.17 0 0 0 0 0.21486 1 3224 3224 0.45834 0 1 + 50127 14068 33326 33347 49133 49133 0.05333063174509789 VGSRKLLR 8 Unmodified _VGSRKLLR_ 0 0 0 nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8-2|HELZ2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1697998046875 3 310.206538 927.597784 NaN NaN NaN NaN NaN NaN NaN 4.4755 1 3.4356 2.9356 3.9356 -1.04 0 0 0 0.21486 1 100 100 0.45834 0 1 50128 3619 33327 33348 49134 49134 0.13108879016567698 VGSRLLELA 9 Unmodified _VGSRLLELA_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7239990234375 2 479.290017 956.565481 0.010804 5.1781E-06 0.27217 0.00013045 0.28297 0.00013563 479.28984266071456 45.151 0.43243 42.361 42.13 42.562 -2.79 17 11 2 0 0 0 0.8319 1 8538 8538 4.3292 0 1 579510 + 50129 17219 33328 33349 49135 49135 0.08546046822880271 VGSRLLELA 9 Unmodified _VGSRLLELA_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.290017 956.565481 0.16914 8.1067E-05 -0.45183 -0.00021656 -0.28269 -0.00013549 479.2898193032298 42.576 0.38759 42.576 42.316 42.703 0 0.10755 -0.00023511 NaN 4.3292 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 409140 + 50130 17219 33328 33349 0.08546046822880271 VGSRPRRK 8 Unmodified _VGSRPRRK_ 0 0 0 ENST00000337120.9_2_16:28875803-28875908:+|nuORF;ENST00000584717.1_1_17:80059560-80064242:-|nuORF ENST00000337120.9_2_16:28875803-28875908:+|nuORF ENST00000337120.9_2_16:28875803-28875908:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.1695251464844 3 319.201787 954.583531 NaN NaN NaN NaN NaN NaN NaN 75.84 1 72.207 71.707 72.707 -3.6337 0 0 0 0.21486 1 14423 14423 0.45834 0 1 50131 8813 33329 33350 49136 49136 0.10442226588270387 VGSRSPCLP 9 Unmodified _VGSRSPCLP_ 0 0 0 LRP2|p.S714Hfs*51|1|0.34|ENSG00000081479|chr2:169271084-169271084|A/-|frameshift_variant LRP2|p.S714Hfs*51|1|0.34|ENSG00000081479|chr2:169271084-169271084|A/-|frameshift_variant LRP2|p.S714Hfs*51|1|0.34|ENSG00000081479|chr2:169271084-169271084|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2398986816406 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 152.96 1 148.19 147.69 148.69 -4.7684 0 0 0 0.23508 1 30395 30395 8.5933 2.2392 1 50132 12086 33330 33351 49137 49137 0.003732718485366604 VGSRSRRQRP 10 Unmodified _VGSRSRRQRP_ 0 0 0 REV__ENSG00000235699|ENST00000438525|CXorf51B REV__ENSG00000235699|ENST00000438525|CXorf51B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 400.2626647949219 3 400.234038 1197.68028 NaN NaN NaN NaN NaN NaN NaN 95.238 1 91.046 90.546 91.546 -4.1911 0 0 0 0.22588 1 18173 18173 3.0723 0.077021 1 + 50133 19719 33331 33352 49138 49138 0.08935169077426508 VGSRVGVR 8 Unmodified _VGSRVGVR_ 0 0 0 nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4;NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant nc|ENSG00000215041|Q96JN8-2|NEURL4 nc|ENSG00000215041|Q96JN8-2|NEURL4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2926025390625 2 415.253769 828.492984 NaN NaN NaN NaN NaN NaN NaN 13.145 1 11.996 11.496 12.496 -1.1493 0 0 0 0.21486 1 1678 1678 0.79363 0 1 50134 7739 33332 33353 49139 49139 0.07187757539998074 VGSRVGVR 8 Unmodified _VGSRVGVR_ 0 0 0 nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4;NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant nc|ENSG00000215041|Q96JN8-2|NEURL4 nc|ENSG00000215041|Q96JN8-2|NEURL4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2728271484375 2 415.253769 828.492984 NaN NaN NaN NaN NaN NaN NaN 73.121 1 69.494 68.994 69.994 -3.6275 0 0 0 0.21486 1 13817 13817 5.2307 0 1 50135 7739 33332 33353 49140 49140 0.07187757539998074 VGSRVGVR 8 Unmodified _VGSRVGVR_ 0 0 0 nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4;NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant nc|ENSG00000215041|Q96JN8-2|NEURL4 nc|ENSG00000215041|Q96JN8-2|NEURL4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.2536315917969 2 415.253769 828.492984 NaN NaN NaN NaN NaN NaN NaN 84.312 1 80.6 80.1 81.1 -3.7117 0 0 0 0.21486 1 16103 16103 9.3474 0 1 50136 7739 33332 33353 49141 49141 0.07187757539998074 VGSRYLGLD 9 Unmodified _VGSRYLGLD_ 0 0 0 ENST00000368874.8_2_1:151264779-151264956:-|nuORF ENST00000368874.8_2_1:151264779-151264956:-|nuORF ENST00000368874.8_2_1:151264779-151264956:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640075683594 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 50.461 1 47.416 46.916 47.916 -3.0453 0 0 0 0.18966 1 9248 9248 1.2148 0 1 50137 9103 33333 33354 49142 49142 0.023328834091330464 VGSSCRHSF 9 Unmodified _VGSSCRHSF_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|190|2|anti-sense REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|190|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27447509765625 2 490.224351 978.434149 NaN NaN NaN NaN NaN NaN NaN 140.64 1 135.99 135.49 136.49 -4.6493 0 0 0 0.23508 1 27766 27766 8.5933 0 1 + 50138 23766 33334 33355 49143 49143 -0.055930868166456094 VGSSDPYKLE 10 Unmodified _VGSSDPYKLE_ 0 0 0 ENST00000341049.6_1_7:116199659-116199932:+|nuORF ENST00000341049.6_1_7:116199659-116199932:+|nuORF ENST00000341049.6_1_7:116199659-116199932:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7702026367188 2 547.771854 1093.52915 NaN NaN NaN NaN NaN NaN NaN 158.3 1 153.02 152.52 153.52 -5.2748 0 0 0 0.22588 1 30722 30722 10.074 2.1638 1 50139 8856 33335 33356 49144 49144 -0.013868748644881634 VGSSERER 8 Unmodified _VGSSERER_ 0 0 0 ENST00000458479.1_1_21:34100579-34100753:+|nuORF ENST00000458479.1_1_21:34100579-34100753:+|nuORF ENST00000458479.1_1_21:34100579-34100753:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2336120605469 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 159.94 1 159.94 159.44 160.44 0 0 0 0 0.21486 1 32114 32114 4.756 0 1 50140 10045 33336 33357 49145 49145 -0.010580482901445976 VGSSERER 8 Unmodified _VGSSERER_ 0 0 0 ENST00000458479.1_1_21:34100579-34100753:+|nuORF ENST00000458479.1_1_21:34100579-34100753:+|nuORF ENST00000458479.1_1_21:34100579-34100753:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2321472167969 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 162.06 1 162.06 161.56 162.56 0 0 0 0 0.23025 1 32560 32560 0.12286 0 1 50141 10045 33336 33357 49146 49146 -0.010580482901445976 VGSSERER 8 Unmodified _VGSSERER_ 0 0 0 ENST00000458479.1_1_21:34100579-34100753:+|nuORF ENST00000458479.1_1_21:34100579-34100753:+|nuORF ENST00000458479.1_1_21:34100579-34100753:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23199462890625 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 21.269 1 19.885 19.385 20.385 -1.3847 0 0 0 0.23782 1 3341 3341 0.12286 0 1 50142 10045 33336 33357 49147 49147 -0.010580482901445976 VGSSFNPVL 9 Unmodified _VGSSFNPVL_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2488708496094 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 55.792 1 52.603 52.103 53.103 -3.1895 0 0 0 0.23508 1 10322 10322 12.532 0 1 + 50143 24099 33337 33358 49148 49148 0.01858096006139931 VGSSGDTC 8 Unmodified _VGSSGDTC_ 0 0 0 ENST00000355485.6_1_1:116234212-116234524:+|nuORF ENST00000355485.6_1_1:116234212-116234524:+|nuORF ENST00000355485.6_1_1:116234212-116234524:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.1499328613281 2 363.142161 724.269769 NaN NaN NaN NaN NaN NaN NaN 179.85 1 174.98 174.48 175.48 -4.868 0 0 0 0.21486 1 35845 35845 0.79363 0 1 50144 8956 33338 33359 49149 49149 -0.10339524027256175 VGSSGEEEHL 10 Unmodified _VGSSGEEEHL_ 0 0 0 REV__ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant REV__ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2626342773438 2 522.235635 1042.45672 NaN NaN NaN NaN NaN NaN NaN 146.22 1 141.11 140.61 141.61 -5.1108 0 0 0 0.22588 1 28277 28277 7.2892 0 1 + 50145 13048 33339 33360 49150 49150 -0.06281208938025884 VGSSGSSG 8 Unmodified _VGSSGSSG_ 0 0 0 ENST00000565793.5_1_15:79089059-79090301:-|nuORF;nc|ENSG00000116396|Q03721-2|KCNC4;ENST00000489935.1_1_1:110754121-110766653:+|nuORF;ENSG00000116396|ENST00000438661|KCNC4;nc|ENSG00000116396|Q03721|KCNC4 ENST00000565793.5_1_15:79089059-79090301:-|nuORF ENST00000565793.5_1_15:79089059-79090301:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.1858825683594 2 319.143018 636.271483 NaN NaN NaN NaN NaN NaN NaN 27.791 1 25.935 25.435 26.435 -1.8565 0 0 0 0.21486 1 4950 4950 0.79363 0 1 50146 2926 33340 33361 49151 49151 -0.0612014694698928 VGSSIETLFE 10 Unmodified _VGSSIETLFE_ 0 0 0 REV__tr|U7T2G3|U7T2G3_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00556PE=3SV=1 REV__tr|U7T2G3|U7T2G3_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00556PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.274169921875 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 144.27 1 139.6 139.1 140.1 -4.6694 0 0 0 0.22588 1 28561 28561 6.7232 0 1 + 50147 25325 33341 33362 49152 49152 -0.0031399072172462184 VGSSIETLFE 10 Unmodified _VGSSIETLFE_ 0 0 0 REV__tr|U7T2G3|U7T2G3_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00556PE=3SV=1 REV__tr|U7T2G3|U7T2G3_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00556PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.275390625 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 141.05 1 136.19 135.69 136.69 -4.8678 0 0 0 0.22588 1 27214 27214 10.824 0.75 1 + 50148 25325 33341 33362 49153 49153 -0.0031399072172462184 VGSSLNGFGTR 11 Unmodified _VGSSLNGFGTR_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7843017578125 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 143.86 1 143.86 143.36 144.36 0 0 0 0 0.21872 1 28721 28721 14.405 5.0223 1 50149 5535 33342 33363 49154 49154 0.008587693238041538 VGSSPDHS 8 Unmodified _VGSSPDHS_ 0 0 0 REV__URGCP|p.G541S|1|0.35|ENSG00000106608|chr7:43877842-43877842|C/T|missense_variant REV__URGCP|p.G541S|1|0.35|ENSG00000106608|chr7:43877842-43877842|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3727416992188 1 785.342423 784.335146 0.63165 0.00049606 1.2241 0.00096132 1.8557 0.0014574 785.3412870354055 148.74 0.1102 144.03 143.94 144.05 -4.7095 4 2 2 0 0 0 0.76728 1 29539 29539 5.7604 0 1 2285300 + 50150 25520 33343 33364 49155 49155 -0.06564786509898113 VGSSRAMAA 9 Unmodified _VGSSRAMAA_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16;REV__MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant REV__ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2379150390625 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 62.234 1 58.995 58.495 59.495 -3.2395 0 0 0 0.23508 1 11665 11665 7.2892 0.93513 1 + 50151 18720;23888 33344 33365 49156 49156 -0.012835877026077469 VGSSRMLYD 9 Unmodified _VGSSRMLYD_ 0 0 0 ENSG00000180611|ENST00000392452|MB21D2 ENSG00000180611|ENST00000392452|MB21D2 ENSG00000180611|ENST00000392452|MB21D2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 514.2471923828125 2 514.247492 1026.48043 NaN NaN NaN NaN NaN NaN NaN 38.159 1 35.754 35.254 36.254 -2.4049 0 0 0 0.21848 1 6778 6778 18.135 4.2289 1 50152 6682 33345 33366 49157 49157 -0.03175066705193785 VGSSSGHTST 10 Unmodified _VGSSSGHTST_ 0 0 0 ENSG00000180871|ENST00000318507|CXCR2 ENSG00000180871|ENST00000318507|CXCR2 ENSG00000180871|ENST00000318507|CXCR2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2307434082031 2 460.209421 918.404288 NaN NaN NaN NaN NaN NaN NaN 104.92 1 104.92 104.42 105.42 0 0 0 0 0.21574 1 20623 20623 25.399 8.457 1 50153 6697 33346 33367 49158 49158 -0.05817747281002994 VGSSSGLL 8 Unmodified _VGSSSGLL_ 0 0 0 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-3|TAOK2;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013854980469 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 105.51 1 105.51 105.01 106.01 0 0 0 0 0.21486 1 20736 20736 2.8892 0 1 50154 4817 33347 33368 49159 49159 0.015661625349594033 VGSSSGLL 8 Unmodified _VGSSSGLL_ 0 0 0 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-3|TAOK2;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2014465332031 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 95.634 1 91.753 91.253 92.253 -3.881 0 0 0 0.21486 1 18351 18351 10.183 0 1 50155 4817 33347 33368 49160 49160 0.015661625349594033 VGSSSGLL 8 Unmodified _VGSSSGLL_ 0 0 0 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-3|TAOK2;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2 TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2011413574219 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 121.79 1 117.26 116.76 117.76 -4.5305 0 0 0 0.21486 1 23447 23447 5.7604 0 1 50156 4817 33347 33368 49161 49161 0.015661625349594033 VGSSSSGT 8 Unmodified _VGSSSSGT_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16;REV__nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;REV__MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant REV__ENSG00000181143|ENST00000397910|MUC16 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.1572265625 2 341.156126 680.297698 NaN NaN NaN NaN NaN NaN NaN 67.275 1 67.275 66.775 67.775 0 0 0 0 0.21486 1 13003 13003 2.5775 0.27475 1 + 50157 18720;23888;17057 33348 33369 49162 49162 -0.05523877775499386 VGSSVAVT 8 Unmodified _VGSSVAVT_ 0 0 0 nc|ENSG00000137411|Q5ST30-3|VARS2;ENSG00000137411|ENST00000676266|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2 nc|ENSG00000137411|Q5ST30-3|VARS2 nc|ENSG00000137411|Q5ST30-3|VARS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2012023925781 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 150.12 1 145.39 144.89 145.89 -4.7323 0 0 0 0.21486 1 29813 29813 2.5775 0 1 50158 4083 33349 33370 49163 49163 0.015661625349594033 VGSSVAVT 8 Unmodified _VGSSVAVT_ 0 0 0 nc|ENSG00000137411|Q5ST30-3|VARS2;ENSG00000137411|ENST00000676266|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2 nc|ENSG00000137411|Q5ST30-3|VARS2 nc|ENSG00000137411|Q5ST30-3|VARS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012939453125 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 77.301 1 73.535 73.035 74.035 -3.7664 0 0 0 0.21486 1 14643 14643 5.7604 0 1 50159 4083 33349 33370 49164 49164 0.015661625349594033 VGSTAGSF 8 Unmodified _VGSTAGSF_ 0 0 0 REV__ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant REV__ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.2354431152344 2 363.176861 724.339169 NaN NaN NaN NaN NaN NaN NaN 141.79 1 137.14 136.64 137.64 -4.6493 0 0 0 0.21486 1 28016 28016 2.5775 1.7838 1 + 50160 12912 33350 33371 49165 49165 -0.03402697016190359 VGSTGAGG 8 Unmodified _VGSTGAGG_ 0 0 0 ENSG00000189182|ENST00000341809|KRT77;CON__Q7Z794 ENSG00000189182|ENST00000341809|KRT77 ENSG00000189182|ENST00000341809|KRT77 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 605.026123046875 1 605.288931 604.281654 1.179 0.00071362 0.78621 0.00047588 1.9652 0.0011895 605.29416795014 166.54 0.10776 161.75 161.7 161.8 -4.7898 4 2 2 0 0 0 1.0249 1 33478 33478 2.5775 0 1 8831200 + 50161 702 33351 33372 49166 49166 -0.036315392217602493 VGSTPHGT 8 Unmodified _VGSTPHGT_ 0 0 0 HK3|p.E758Gfs*38|1|0.37|ENSG00000160883|chr5:176881812-176881813|-/C|frameshift_variant;ENSG00000160883|ENST00000292432|HK3 HK3|p.E758Gfs*38|1|0.37|ENSG00000160883|chr5:176881812-176881813|-/C|frameshift_variant HK3|p.E758Gfs*38|1|0.37|ENSG00000160883|chr5:176881812-176881813|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 378.1816101074219 2 378.18776 754.360967 NaN NaN NaN NaN NaN NaN NaN 22.266 1 20.49 19.99 20.99 -1.776 0 0 0 0.23749 1 3528 3528 0.0082765 0 1 50162 5272 33352 33373 49167 49167 -0.02603892267620722 VGSTTVTY 8 Unmodified _VGSTTVTY_ 0 0 0 ENST00000562866.1_1_16:89783094-89783286:+|nuORF ENST00000562866.1_1_16:89783094-89783286:+|nuORF ENST00000562866.1_1_16:89783094-89783286:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.27069091796875 2 414.210901 826.407249 NaN NaN NaN NaN NaN NaN NaN 77.828 1 74.365 73.865 74.865 -3.4633 0 0 0 0.21486 1 15197 15197 10.183 4.423 1 50163 11323 33353 33374 49168 49168 -0.012898721562009996 VGSTVGPG 8 Unmodified _VGSTVGPG_ 0 0 0 REV__TSC22D1|p.G422Vfs*22|1|0.28|ENSG00000102804|chr13:44574812-44574812|T/-|frameshift_variant REV__TSC22D1|p.G422Vfs*22|1|0.28|ENSG00000102804|chr13:44574812-44574812|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.18402099609375 2 337.179404 672.344254 NaN NaN NaN NaN NaN NaN NaN 24.618 1 22.97 22.47 23.47 -1.6482 0 0 0 0.23711 1 4295 4295 0.12286 0 1 + 50164 14849 33354 33375 49169 49169 -0.005023931535674819 VGSVDATA 8 Unmodified _VGSVDATA_ 0 0 0 REV__ENST00000418868.5_1_3:197350234-197354776:-|nuORF REV__ENST00000418868.5_1_3:197350234-197354776:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015380859375 2 360.182143 718.349734 NaN NaN NaN NaN NaN NaN NaN 13.994 1 12.783 12.283 13.283 -1.2106 0 0 0 0.21486 1 1818 1818 0.79363 0 1 + 50165 21486 33355 33376 49170 49170 -0.02070714361775572 VGSVNLFSDEN 11 Unmodified _VGSVNLFSDEN_ 0 0 0 ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A ENSG00000132382|ENST00000254718|MYBBP1A ENSG00000132382|ENST00000254718|MYBBP1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2694702148438 2 590.777667 1179.54078 0.6048 0.0003573 -1.3583 -0.00080243 -0.75346 -0.00044513 590.7788483297362 162.26 0.20772 157.12 156.96 157.16 -5.1438 7 5 2 0 0 0 0.91597 1 31522 31522 10.8 5.9025 1 4998100 50166 3721 33356 33377 49171 49171 -0.04180677841122815 VGSVPALAAPP 11 Unmodified _VGSVPALAAPP_ 0 0 0 REV__ENSG00000010017|ENST00000011619|RANBP9 REV__ENSG00000010017|ENST00000011619|RANBP9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25469970703125 2 489.784567 977.554582 NaN NaN NaN NaN NaN NaN NaN 149.49 1 149.49 148.99 149.99 0 0 0 0 0.22775 1 29928 29928 10.074 2.1638 1 + 50167 13915 33357 33378 49172 49172 0.06490644448604144 VGSVPPPP 8 Unmodified _VGSVPPPP_ 0 0 0 ENST00000591224.1_1_19:46181025-46181577:+|nuORF ENST00000591224.1_1_19:46181025-46181577:+|nuORF ENST00000591224.1_1_19:46181025-46181577:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2170104980469 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 56.943 1 56.943 56.443 57.443 0 0 0 0 0.23366 1 10880 10880 0.12286 0 1 50168 11613 33358 33379 49173 49173 0.02767056777236121 VGSVSHCRA 9 Unmodified _VGSVSHCRA_ 0 0 0 ENSG00000145332|ENST00000273963|KLHL8;nc|ENSG00000145332|Q9P2G9-2|KLHL8 ENSG00000145332|ENST00000273963|KLHL8 ENSG00000145332|ENST00000273963|KLHL8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2256164550781 2 458.226894 914.439234 NaN NaN NaN NaN NaN NaN NaN 43.239 1 40.52 40.02 41.02 -2.7191 0 0 0 0.20155 1 8101 8101 23.148 3.8914 1 50169 4602 33359 33380 49174 49174 -0.021407829540294188 VGSVSYFGL 9 Unmodified _VGSVSYFGL_ 0 0 0 ENST00000382496.9_1_5:9041100-9041304:-|nuORF ENST00000382496.9_1_5:9041100-9041304:-|nuORF ENST00000382496.9_1_5:9041100-9041304:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16448974609375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 151.88 1 147.13 146.63 147.63 -4.7523 0 0 0 0.19624 1 30181 30181 0.073264 0 1 50170 9343 33360 33381 49175 49175 0.003546936318684857 VGSVTSLS 8 Unmodified _VGSVTSLS_ 0 0 0 ENST00000306910.8_1_19:58929280-58929493:+|nuORF ENST00000306910.8_1_19:58929280-58929493:+|nuORF ENST00000306910.8_1_19:58929280-58929493:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21282958984375 2 375.205618 748.396684 NaN NaN NaN NaN NaN NaN NaN 46.24 1 43.399 42.899 43.899 -2.8409 0 0 0 0.23749 1 8726 8726 0.12286 0 1 50171 8610 33361 33382 49176 49176 0.01242145189371513 VGSVTSLS 8 Unmodified _VGSVTSLS_ 0 0 0 ENST00000306910.8_1_19:58929280-58929493:+|nuORF ENST00000306910.8_1_19:58929280-58929493:+|nuORF ENST00000306910.8_1_19:58929280-58929493:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2189636230469 2 375.205618 748.396684 NaN NaN NaN NaN NaN NaN NaN 46.29 1 43.449 42.949 43.949 -2.8409 0 0 0 0.23749 1 8735 8735 0.12286 0 1 50172 8610 33361 33382 49177 49177 0.01242145189371513 VGSVTVYY 8 Unmodified _VGSVTVYY_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 444.2302551269531 2 444.229094 886.443634 NaN NaN NaN NaN NaN NaN NaN 143.83 1 143.83 143.33 144.33 0 0 0 0 0.22684 1 28715 28715 0.68139 0 1 50173 3709 33362 33383 49178 49178 -0.004129952594894348 VGSVVFSVL 9 Unmodified _VGSVVFSVL_ 0 0 0 CDHR2|p.S155Cfs*10|1|0.1|ENSG00000074276|chr5:176574138-176574139|-/AT|frameshift_variant;CDHR2|p.R383Afs*51|1|0.42|ENSG00000074276|chr5:176576133-176576133|C/-|frameshift_variant;CDHR2|p.G788Vfs*4|1|0.31|ENSG00000074276|chr5:176584639-176584639|G/-|frameshift_variant;ENSG00000074276|ENST00000261944|CDHR2 CDHR2|p.S155Cfs*10|1|0.1|ENSG00000074276|chr5:176574138-176574139|-/AT|frameshift_variant CDHR2|p.S155Cfs*10|1|0.1|ENSG00000074276|chr5:176574138-176574139|-/AT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7686767578125 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 157.64 1 152.85 152.35 153.35 -4.7885 0 0 0 0.23508 1 31351 31351 4.756 0 1 50174 467 33363 33384 49179 49179 0.06567857045627079 VGSVVLEGGL 10 Unmodified _VGSVVLEGGL_ 0 0 0 REV__ENST00000522792.1_1_5:138268134-138269775:+|nuORF REV__ENST00000522792.1_1_5:138268134-138269775:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25762939453125 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 77.951 1 74.487 73.987 74.987 -3.4633 0 0 0 0.22583 1 15221 15221 13.906 1.3745 1 + 50175 13602 33364 33385 49180 49180 0.05582651694669494 VGSVVLSS 8 Unmodified _VGSVVLSS_ 0 0 0 ENSG00000221916|ENST00000408991|C19orf73 ENSG00000221916|ENST00000408991|C19orf73 ENSG00000221916|ENST00000408991|C19orf73 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2183532714844 2 374.215986 746.417419 -0.22402 -8.383E-05 0.19314 7.2278E-05 -0.030871 -1.1552E-05 374.21596661766455 32.236 0.72995 30.087 29.722 30.452 -2.1483 33 20 3 0 0 0 0.83982 1 5596 5596 2.5775 0 1 1190000 50176 7765 33365 33386 49181 49181 0.03406735569058128 VGSVVLSS 8 Unmodified _VGSVVLSS_ 0 0 0 ENSG00000221916|ENST00000408991|C19orf73 ENSG00000221916|ENST00000408991|C19orf73 ENSG00000221916|ENST00000408991|C19orf73 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 374.215986 746.417419 -0.13845 -5.1812E-05 0.29331 0.00010976 0.15485 5.7949E-05 374.216025405367 30.269 0.70376 30.269 29.989 30.693 0 0.17895 0.00023205 NaN 2.5775 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1349800 50177 7765 33365 33386 0.03406735569058128 VGSVVLSS 8 Unmodified _VGSVVLSS_ 0 0 0 ENSG00000221916|ENST00000408991|C19orf73 ENSG00000221916|ENST00000408991|C19orf73 ENSG00000221916|ENST00000408991|C19orf73 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 374.215986 746.417419 -0.033341 -1.2477E-05 -0.010707 -4.0068E-06 -0.044048 -1.6484E-05 374.2159193749524 32.176 0.60334 29.945 29.586 30.189 -2.2305 -0.14507 4.5125E-06 NaN 2.5775 31 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2420400 50178 7765 33365 33386 0.03406735569058128 VGSVVLSS 8 Unmodified _VGSVVLSS_ 0 0 0 ENSG00000221916|ENST00000408991|C19orf73 ENSG00000221916|ENST00000408991|C19orf73 ENSG00000221916|ENST00000408991|C19orf73 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 374.215986 746.417419 0.27296 0.00010215 -0.44081 -0.00016496 -0.16785 -6.2812E-05 374.2157791821453 32.086 0.62763 30.059 29.73 30.357 -2.0264 -0.031026 -0.00031739 NaN 2.5775 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2364200 50179 7765 33365 33386 0.03406735569058128 VGSVYQKT 8 Unmodified _VGSVYQKT_ 0 0 0 ENST00000458579.5_1_7:44091436-44097592:+|nuORF;nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL ENST00000458579.5_1_7:44091436-44097592:+|nuORF ENST00000458579.5_1_7:44091436-44097592:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 442.2339782714844 2 441.239993 880.465432 0.0092354 4.075E-06 0.22427 9.8957E-05 0.23351 0.00010303 441.23993648955496 90.768 1.3899 86.99 86.293 87.682 -3.7779 94 39 3 0 0 0 8448 1 17313 17313 0.30703 0 1 2263300 50180 4002 33366 33387 49182 49182 0.020418094890942484 VGSWAVGR 8 Unmodified _VGSWAVGR_ 0 0 0 REV__ENST00000478150.1_1_16:31045126-31045651:+|nuORF REV__ENST00000478150.1_1_16:31045126-31045651:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 416.239013671875 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 60.66 1 60.66 60.16 61.16 0 0 0 0 0.21486 1 11634 11634 9.3474 0 1 + 50181 22135 33367 33388 49183 49183 0.017883797573290394 VGSWNGYTY 9 Unmodified _VGSWNGYTY_ 0 0 0 tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1 tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1 tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6840209960938 2 523.732532 1045.45051 NaN NaN NaN NaN NaN NaN NaN 134.69 1 130.05 129.55 130.55 -4.6399 0 0 0 0.23508 1 26562 26562 4.756 0.42677 1 50182 25992 33368 33389 49184 49184 -0.0703968237889967 VGSWNGYTY 9 Unmodified _VGSWNGYTY_ 0 0 0 tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1 tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1 tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.69921875 2 523.732532 1045.45051 -0.44991 -0.00023563 4.4193 0.0023145 3.9693 0.0020789 524.2355430419402 140.68 0.10713 135.69 135.64 135.75 -4.9877 4 2 2 0 0 0 0.66537 1 27067 27067 8.5933 2.8329 1 1199400 50183 25992 33368 33389 49185 49185 -0.0703968237889967 VGSWPSPARS 10 Unmodified _VGSWPSPARS_ 0 0 0 REV__ENST00000487676.1_1_6:32629728-32629809:-|nuORF REV__ENST00000487676.1_1_6:32629728-32629809:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2674560546875 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 144.21 1 139.54 139.04 140.04 -4.6694 0 0 0 0.22588 1 28546 28546 8.7454 2.115 1 + 50184 22262 33369 33390 49186 49186 3.401640651645721E-05 VGSWRSCRM 9 Unmodified _VGSWRSCRM_ 0 0 0 ENST00000378891.9_3_1:1271359-1271518:-|nuORF ENST00000378891.9_3_1:1271359-1271518:-|nuORF ENST00000378891.9_3_1:1271359-1271518:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2662963867188 2 541.255128 1080.4957 NaN NaN NaN NaN NaN NaN NaN 149.42 1 144.22 143.72 144.72 -5.1994 0 0 0 0.23508 1 28945 28945 4.756 0 1 50185 9286 33370 33391 49187 49187 -0.0413247838901043 VGSYATRRLE 10 Unmodified _VGSYATRRLE_ 0 0 0 REV__ENSG00000136492|ENST00000259008|BRIP1 REV__ENSG00000136492|ENST00000259008|BRIP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.311767578125 2 576.312012 1150.60947 NaN NaN NaN NaN NaN NaN NaN 152.48 1 152.48 151.98 152.98 0 0 0 0 0.22588 1 30541 30541 12.241 2.0901 1 + 50186 16333 33371 33392 49188 49188 0.04019031249231375 VGSYLVRR 8 Unmodified _VGSYLVRR_ 0 0 0 ENST00000478009.1_1_1:202935608-202936333:-|nuORF;CYB5R1|p.K248Gfs*27|1|0.05|ENSG00000159348|chr1:202963069-202963070|-/GGGTTCC|frameshift_variant;ENSG00000159348|ENST00000367249|CYB5R1 ENST00000478009.1_1_1:202935608-202936333:-|nuORF ENST00000478009.1_1_1:202935608-202936333:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.1900634765625 3 317.190776 948.550499 NaN NaN NaN NaN NaN NaN NaN 43.989 1 41.199 40.699 41.699 -2.79 0 0 0 0.21486 1 8255 8255 0.45834 0 1 50187 761 33372 33393 49189 49189 0.07416599745556596 VGSYVKSMILY 11 Unmodified _VGSYVKSMILY_ 0 0 0 REV__ENST00000470972.5_1_9:108151700-108151754:+|nuORF REV__ENST00000470972.5_1_9:108151700-108151754:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7529296875 2 630.338849 1258.66315 NaN NaN NaN NaN NaN NaN NaN 26.198 1 24.416 23.916 24.916 -1.7821 0 0 0 0.23264 1 4617 4617 6.2058 2.2614 1 + 50188 22035 33373 33394 49190 49190 0.044160676367482665 VGTAELLP 8 Unmodified _VGTAELLP_ 0 0 0 KRBA1|p.Q367Nfs*25|1|0.31|ENSG00000133619|chr7:149724818-149724818|C/-|frameshift_variant;KRBA1|p.I622Sfs*4|1|0.09|ENSG00000133619|chr7:149730195-149730195|G/-|frameshift_variant;nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1 KRBA1|p.Q367Nfs*25|1|0.31|ENSG00000133619|chr7:149724818-149724818|C/-|frameshift_variant KRBA1|p.Q367Nfs*25|1|0.31|ENSG00000133619|chr7:149724818-149724818|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 400.21832275390625 2 400.231636 798.448719 -0.32441 -0.00012984 -2.2386 -0.00089596 -2.563 -0.0010258 400.2331721261848 72.043 0.4586 68.732 68.6 69.058 -3.3107 14 12 2 0 0 0 0.98792 1 14102 14102 14.582 5.9884 1 550340 50189 3809 33374 33395 49191 49191 0.0414330860313612 VGTAFGVAPID 11 Unmodified _VGTAFGVAPID_ 0 0 0 REV__tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1 REV__tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.68798828125 2 523.779482 1045.54441 NaN NaN NaN NaN NaN NaN NaN 19.48 1 17.845 17.345 18.345 -1.6351 0 0 0 0.22943 1 2941 2941 8.7454 0.83525 1 + 50190 25217 33375 33396 49192 49192 0.023460367233838042 VGTALVTVGV 10 Unmodified _VGTALVTVGV_ 0 0 0 ENSG00000189339|ENST00000617444|SLC35E2B;ENST00000480991.1_1_1:1597223-1601267:-|nuORF ENSG00000189339|ENST00000617444|SLC35E2B ENSG00000189339|ENST00000617444|SLC35E2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2382507324219 2 458.279118 914.543683 0.68585 0.00031431 -0.3179 -0.00014569 0.36795 0.00016862 458.2789358476403 101.88 0.6304 101.88 101.57 102.2 0 43 17 3 0 0 0 0.21399 1 20030 20030 48.346 16.04 1 8099200 50191 7225 33376 33397 49193 49193 0.08299242074326685 VGTALVTVGV 10 Unmodified _VGTALVTVGV_ 0 0 0 ENSG00000189339|ENST00000617444|SLC35E2B;ENST00000480991.1_1_1:1597223-1601267:-|nuORF ENSG00000189339|ENST00000617444|SLC35E2B ENSG00000189339|ENST00000617444|SLC35E2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2343444824219 2 458.279118 914.543683 0.0088762 4.0678E-06 0.55125 0.00025263 0.56013 0.00025669 458.2793233225952 105.96 0.70441 101.59 101.19 101.89 -4.3764 48 19 3 0 0 0 0.2412 1 20334 20334 54.774 0 1 10514000 50192 7225 33376 33397 49194 49194 0.08299242074326685 VGTALVTVGV 10 Unmodified _VGTALVTVGV_ 0 0 0 ENSG00000189339|ENST00000617444|SLC35E2B;ENST00000480991.1_1_1:1597223-1601267:-|nuORF ENSG00000189339|ENST00000617444|SLC35E2B ENSG00000189339|ENST00000617444|SLC35E2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23858642578125 2 458.279118 914.543683 0.73566 0.00033714 -0.32145 -0.00014732 0.41421 0.00018982 458.27898437747166 105.69 1.082 101.6 100.97 102.05 -4.0913 67 30 3 0 0 0 0.54036 1 20392 20392 30.637 7.9003 1 7054900 50193 7225 33376 33397 49195 49195 0.08299242074326685 VGTAPDTGVL 10 Unmodified _VGTAPDTGVL_ 0 0 0 REV__ENST00000294507.3_1_1:31205470-31205635:-|nuORF REV__ENST00000294507.3_1_1:31205470-31205635:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2399597167969 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 69.09 1 69.09 68.59 69.59 0 0 0 0 0.20769 1 13370 13370 26.884 0 1 + 50194 20365 33377 33398 49196 49196 0.01945774797957256 VGTAPDTGVL 10 Unmodified _VGTAPDTGVL_ 0 0 0 REV__ENST00000294507.3_1_1:31205470-31205635:-|nuORF REV__ENST00000294507.3_1_1:31205470-31205635:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2510070800781 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 69.187 1 69.187 68.687 69.687 0 0 0 0 0.20769 1 13389 13389 26.884 0 1 + 50195 20365 33377 33398 49197 49197 0.01945774797957256 VGTAVLELQ 9 Unmodified _VGTAVLELQ_ 0 0 0 REV__ENSG00000088053|ENST00000310373|GP6 REV__ENSG00000088053|ENST00000310373|GP6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2489013671875 2 465.26875 928.522947 -0.081065 -3.7717E-05 -0.047989 -2.2328E-05 -0.12905 -6.0044E-05 465.2688617648526 83.625 0.24248 80.017 79.942 80.184 -3.6079 8 6 2 0 0 0 0.59847 1 16360 16360 0.12781 0 1 854620 + 50196 14508 33378 33399 49198 49198 0.055826516946467564 VGTAWAMLDT 10 Unmodified _VGTAWAMLDT_ 0 0 0 REV__ENST00000355943.7_1_5:110074761-110074947:+|nuORF REV__ENST00000355943.7_1_5:110074761-110074947:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2699584960938 2 532.757692 1063.50083 -0.024816 -1.3221E-05 -1.3713 -0.00073055 -1.3961 -0.00074377 532.7569546900911 14.473 0.35511 14.473 14.279 14.634 0 11 9 2 0 0 0 0.87854 1 2134 2134 13.906 4.5229 1 401470 + 50197 20802 33379 33400 49199 49199 -0.028378960454119806 VGTAWAMLDT 10 Unmodified _VGTAWAMLDT_ 0 0 0 REV__ENST00000355943.7_1_5:110074761-110074947:+|nuORF REV__ENST00000355943.7_1_5:110074761-110074947:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 532.757692 1063.50083 -0.51652 -0.00027518 -2.0546 -0.0010946 -2.5711 -0.0013698 532.7564735858949 15.457 0.41671 14.342 13.99 14.407 -1.1142 -0.065084 -0.00049808 NaN 13.906 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 504770 + 50198 20802 33379 33400 -0.028378960454119806 VGTDAHDAGL 10 Unmodified _VGTDAHDAGL_ 0 0 0 REV__nc|ENSG00000278030|P04435|TRBV7-9 REV__nc|ENSG00000278030|P04435|TRBV7-9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7440185546875 2 478.227613 954.440674 0.37474 0.00017921 -0.38914 -0.0001861 -0.014403 -6.888E-06 478.22748282193317 31.064 0.70488 28.947 28.573 29.278 -2.1167 26 19 2 0 0 0 0.70357 1 5665 5665 10.824 0 1 1649500 + 50199 24310 33380 33401 49200 49200 -0.03836870384282065 VGTDKKEP 8 Unmodified _VGTDKKEP_ 0 0 0 REV__ENSG00000163393|ENST00000369503|SLC22A15 REV__ENSG00000163393|ENST00000369503|SLC22A15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22039794921875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 70.986 1 67.519 67.019 68.019 -3.467 0 0 0 0.21486 1 13448 13448 5.7604 0.52976 1 + 50200 17567 33381 33402 49201 49201 0.019015056264720442 VGTEAGLE 8 Unmodified _VGTEAGLE_ 0 0 0 REV__OXA1L|p.N431Mfs*4|1|0.29|ENSG00000155463|chr14:22771273-22771273|A/-|frameshift_variant REV__OXA1L|p.N431Mfs*4|1|0.29|ENSG00000155463|chr14:22771273-22771273|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7124328613281 2 388.195251 774.375948 NaN NaN NaN NaN NaN NaN NaN 82.732 1 79.124 78.624 79.624 -3.6079 0 0 0 0.21486 1 16168 16168 9.3474 0 1 + 50201 17216 33382 33403 49202 49202 -0.020264451902789915 VGTEAPGLPS 10 Unmodified _VGTEAPGLPS_ 0 0 0 ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant;nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant ACAN|p.P2306Lfs*10|1|0.42|ENSG00000157766|chr15:88860405-88860405|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.11590576171875 2 464.242732 926.470912 0.10134 4.7046E-05 0.25969 0.00012056 0.36103 0.00016761 464.2426639266098 27.138 0.7918 25.216 24.503 25.294 -1.9222 35 22 2 0 0 0 0.83242 1 4518 4518 14.838 0 1 846250 50202 30 33383 33404 49203 49203 0.004734882809088958 VGTEEGIKF 9 Unmodified _VGTEEGIKF_ 0 0 0 REV__ENSG00000083857|ENST00000441802|FAT1;REV__FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant REV__ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2580871582031 2 490.258382 978.502212 -0.13775 -6.7532E-05 -1.19 -0.00058342 -1.3278 -0.00065095 490.2580658178962 58.891 0.14414 55.685 55.609 55.753 -3.2052 6 3 2 0 0 0 0.39168 1 10998 10998 0.37959 0 1 292910 + 50203 14460;23525 33384 33405 49204 49204 0.012100613150096251 VGTFEVSYDY 10 Unmodified _VGTFEVSYDY_ 0 0 0 REV__ENSG00000162639|ENST00000651461|HENMT1 REV__ENSG00000162639|ENST00000651461|HENMT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2652587890625 2 590.263862 1178.51317 NaN NaN NaN NaN NaN NaN NaN 53.525 1 50.437 49.937 50.937 -3.0876 0 0 0 0.22588 1 9854 9854 7.2892 0.56607 1 + 50204 17513 33385 33406 49205 49205 -0.06894581101369113 VGTFGKVKVG 10 Unmodified _VGTFGKVKVG_ 0 0 0 ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1;ENST00000511248.1_1_5:40777545-40798228:-|nuORF;ENST00000397006.2_1_5:40777312-40798264:-|nuORF ENSG00000132356|ENST00000397128|PRKAA1 ENSG00000132356|ENST00000397128|PRKAA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 331.2063903808594 3 331.202682 990.586216 NaN NaN NaN NaN NaN NaN NaN 63.428 1 63.428 62.928 63.928 0 0 0 0 0.22588 1 12196 12196 0.69767 0.23933 1 50205 3719 33386 33407 49206 49206 0.09054637202564209 VGTFGLVG 8 Unmodified _VGTFGLVG_ 0 0 0 REV__nc|ENSG00000132704|Q96LA5-5|FCRL2 REV__nc|ENSG00000132704|Q96LA5-5|FCRL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2225036621094 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 12.133 1 11.123 10.623 11.623 -1.0098 0 0 0 0.21486 1 1660 1660 2.8892 0 1 + 50206 16129 33387 33408 49207 49207 0.027670567772474897 VGTGADVP 8 Unmodified _VGTGADVP_ 0 0 0 ENST00000567876.1_1_15:74282649-74284576:-|nuORF;nc|ENSG00000067221|Q9UBI4-6|STOML1;nc|ENSG00000067221|Q9UBI4-4|STOML1;nc|ENSG00000067221|Q9UBI4-2|STOML1;STOML1|p.A372Pfs*3|1|0.41|ENSG00000067221|chr15:73984020-73984020|C/-|frameshift_variant;nc|ENSG00000067221|Q9UBI4-3|STOML1;ENSG00000067221|ENST00000541638|STOML1 ENST00000567876.1_1_15:74282649-74284576:-|nuORF ENST00000567876.1_1_15:74282649-74284576:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 358.06658935546875 2 358.184686 714.354819 NaN NaN NaN NaN NaN NaN NaN 66.676 1 63.568 63.068 64.068 -3.1086 0 0 0 0.21486 1 12926 12926 6.3541 0 1 50207 1388 33388 33409 49208 49208 -0.01378410499137317 VGTGAPALED 10 Unmodified _VGTGAPALED_ 0 0 0 REV__nc|ENSG00000105290|P51693|APLP1 REV__nc|ENSG00000105290|P51693|APLP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2483825683594 2 465.232364 928.450176 -0.098086 -4.5633E-05 -0.35489 -0.00016511 -0.45297 -0.00021074 465.232136197706 79.533 1.0482 75.729 75.128 76.176 -3.8048 43 29 2 0 0 0 0.51311 1 14978 14978 0.043787 0 1 1501600 + 50208 14976 33389 33410 49209 49209 -0.01691102098754982 VGTGEGSL 8 Unmodified _VGTGEGSL_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2009582519531 2 360.182143 718.349734 NaN NaN NaN NaN NaN NaN NaN 123.62 1 119.03 118.53 119.53 -4.5926 0 0 0 0.20568 1 23797 23797 20.871 6.2895 1 50209 3322 33390 33411 49210 49210 -0.020707143617642032 VGTGGADA 8 Unmodified _VGTGGADA_ 0 0 0 ENST00000538503.5_1_12:121882954-121987523:-|nuORF ENST00000538503.5_1_12:121882954-121987523:-|nuORF ENST00000538503.5_1_12:121882954-121987523:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1521301269531 2 324.153386 646.292219 NaN NaN NaN NaN NaN NaN NaN 36.685 1 34.347 33.847 34.847 -2.3375 0 0 0 0.21486 1 6478 6478 0.79363 0 1 50210 11048 33391 33412 49211 49211 -0.04507556567341453 VGTGGGGD 8 Unmodified _VGTGGGGD_ 0 0 0 REV__ENST00000291074.9_2_17:613803-618010:-|nuORF REV__ENST00000291074.9_2_17:613803-618010:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1365966796875 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 152.21 1 146.97 146.47 147.47 -5.2365 0 0 0 0.21486 1 29508 29508 0.79363 0 1 + 50211 20354 33392 33413 49212 49212 -0.06348129601428809 VGTGGGGD 8 Unmodified _VGTGGGGD_ 0 0 0 REV__ENST00000291074.9_2_17:613803-618010:-|nuORF REV__ENST00000291074.9_2_17:613803-618010:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 152.23 1 147.06 146.56 147.56 -5.1759 0 0 0 0.2396 1 29504 29504 0 0 1 + 50212 20354 33392 33413 49213 49213 -0.06348129601428809 VGTGGLSGLI 10 Unmodified _VGTGGLSGLI_ 0 0 0 REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1 REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2283020019531 2 437.255643 872.496732 0.36367 0.00015902 -0.75502 -0.00033014 -0.39135 -0.00017112 437.2552932227091 75.87 0.48534 75.87 75.611 76.096 0 21 13 2 0 0 0 0.59928 1 14699 14699 19.257 3.1079 1 2217200 + 50213 14253 33393 33414 49214 49214 0.05538382523195651 VGTHILDR 8 Unmodified _VGTHILDR_ 0 0 0 REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3 REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.0206298828125 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 34.129 1 31.983 31.483 32.483 -2.1468 0 0 0 0.21486 1 5977 5977 1.6526 0 1 + 50214 14168 33394 33415 49215 49215 0.04484320474557535 VGTHILDR 8 Unmodified _VGTHILDR_ 0 0 0 REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3 REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.0393981933594 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 42.081 1 39.475 38.975 39.975 -2.606 0 0 0 0.21486 1 7561 7561 1.6526 0 1 + 50215 14168 33394 33415 49216 49216 0.04484320474557535 VGTHKLMH 8 Unmodified _VGTHKLMH_ 0 0 0 REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.91796875 3 308.169095 921.485456 NaN NaN NaN NaN NaN NaN NaN 17.947 1 16.636 16.136 17.136 -1.3109 0 0 0 0.21486 1 2901 2901 0.45834 0 1 + 50216 14201 33395 33416 49217 49217 0.021572819480638827 VGTHVFCAK 9 Unmodified _VGTHVFCAK_ 0 0 0 REV__ENSG00000153339|ENST00000283351|TRAPPC8 REV__ENSG00000153339|ENST00000283351|TRAPPC8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.1649169921875 3 321.168984 960.485122 NaN NaN NaN NaN NaN NaN NaN 80.56 1 76.872 76.372 77.372 -3.6879 0 0 0 0.23508 1 15361 15361 1.0715 0 1 + 50217 17146 33396 33417 49218 49218 0.0032986222820454714 VGTICSKPPM 10 Unmodified _VGTICSKPPM_ 0 0 0 tr|U7T1S2|U7T1S2_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00555PE=3SV=1 tr|U7T1S2|U7T1S2_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00555PE=3SV=1 tr|U7T1S2|U7T1S2_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00555PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.87615966796875 3 344.845401 1031.51437 -0.35753 -0.00012329 -0.63348 -0.00021845 -0.99101 -0.00034175 344.84514337966056 20.874 1.2247 20.874 20.17 21.395 0 96 34 4 0 0 0 0.76577 1 3343 3343 0.77653 0.77653 1 8268900 50218 26328 33397 33418 49219 49219 -0.0001236153782429028 VGTICSKPPM 10 Unmodified _VGTICSKPPM_ 0 0 0 tr|U7T1S2|U7T1S2_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00555PE=3SV=1 tr|U7T1S2|U7T1S2_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00555PE=3SV=1 tr|U7T1S2|U7T1S2_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00555PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 344.845401 1031.51437 0.32104 0.00011071 -1.2871 -0.00044386 -0.96609 -0.00033315 344.84490709184433 22.19 1.0859 20.716 20.125 21.211 -1.4742 -0.049999 -0.00041319 NaN 0.77653 94 30 4 NaN NaN NaN NaN 0 NaN NaN 0 6366500 50219 26328 33397 33418 -0.0001236153782429028 VGTICSKPPM 10 Unmodified _VGTICSKPPM_ 0 0 0 tr|U7T1S2|U7T1S2_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00555PE=3SV=1 tr|U7T1S2|U7T1S2_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00555PE=3SV=1 tr|U7T1S2|U7T1S2_FUSNUFlavinreductaselikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00555PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 344.845401 1031.51437 -0.13428 -4.6306E-05 -0.79991 -0.00027584 -0.93419 -0.00032215 344.84507864423915 22.161 1.1177 20.708 20.108 21.226 -1.4535 -0.058061 9.0866E-05 NaN 0.77653 96 31 4 NaN NaN NaN NaN 0 NaN NaN 0 5435400 50220 26328 33397 33418 -0.0001236153782429028 VGTIDLNRR 9 Unmodified _VGTIDLNRR_ 0 0 0 REV__ENSG00000137776|ENST00000380516|SLTM REV__ENSG00000137776|ENST00000380516|SLTM MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26171875 2 522.301447 1042.58834 NaN NaN NaN NaN NaN NaN NaN 125.83 1 125.83 125.33 126.33 0 0 0 0 0.23508 1 24824 24824 6.7232 0.96273 1 + 50221 16408 33398 33419 49220 49220 0.06875065940357672 VGTIGMGDVI 10 Unmodified _VGTIGMGDVI_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2535400390625 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 107.44 1 103.03 102.53 103.53 -4.4121 0 0 0 0.22576 1 20613 20613 14.838 1.3304 1 + 50222 17006 33399 33420 49221 49221 0.013190054429401243 VGTIIATIK 9 Unmodified _VGTIIATIK_ 0 0 0 nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF nc|ENSG00000101596|A6NHR9-2|SMCHD1 nc|ENSG00000101596|A6NHR9-2|SMCHD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2274169921875 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 84.695 1 84.695 84.195 85.195 0 0 0 0 0.19652 1 16524 16524 0.029283 0 1 50223 2076 33400 33421 49222 49222 0.11936118971050291 VGTIIVTAIAH 11 Unmodified _VGTIIVTAIAH_ 0 0 0 REV__nc|ENSG00000144771|Q9HBL6-2|LRTM1 REV__nc|ENSG00000144771|Q9HBL6-2|LRTM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.772705078125 2 547.832049 1093.64954 NaN NaN NaN NaN NaN NaN NaN 120.67 1 116.2 115.7 116.7 -4.467 0 0 0 0.22632 1 23234 23234 0.00056442 0 1 + 50224 16802 33401 33422 49223 49223 0.10646577919806077 VGTILLILS 9 Unmodified _VGTILLILS_ 0 0 0 nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2 nc|ENSG00000157765|O95436-2|SLC34A2 nc|ENSG00000157765|O95436-2|SLC34A2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25372314453125 2 464.807511 927.600469 NaN NaN NaN NaN NaN NaN NaN 161.3 1 156.07 155.57 156.57 -5.2299 0 0 0 0.1963 1 31329 31329 0 0 1 50225 5138 33402 33423 49224 49224 0.13377289630864198 VGTIPPRGEGP 11 Unmodified _VGTIPPRGEGP_ 0 0 0 REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2723999023438 2 540.29583 1078.57711 0.19005 0.00010268 0.17558 9.4867E-05 0.36563 0.00019755 540.2957151283206 15.866 0.31464 15.866 15.779 16.094 0 16 8 3 0 0 0 0.78079 1 2425 2425 6.2058 0 1 1749000 + 50226 16584 33403 33424 49225 49225 0.04096243846242942 VGTIPPRGEGP 11 Unmodified _VGTIPPRGEGP_ 0 0 0 REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 540.29583 1078.57711 0.19005 0.00010268 0.17558 9.4867E-05 0.36563 0.00019755 540.2957151283206 15.866 0.31464 15.866 15.779 16.094 0 0.063154 -0.00025083 NaN 6.2058 16 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1749000 + 50227 16584 33403 33424 0.04096243846242942 VGTIPPRGEGP 11 Unmodified _VGTIPPRGEGP_ 0 0 0 REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.29583 1078.57711 -0.10934 -5.9076E-05 0.23677 0.00012792 0.12743 6.8849E-05 540.2958839238669 17.01 0.2426 15.794 15.636 15.878 -1.2159 -0.0084907 -0.00018471 NaN 6.2058 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1371800 + 50228 16584 33403 33424 0.04096243846242942 VGTIPPRGEGP 11 Unmodified _VGTIPPRGEGP_ 0 0 0 REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.29583 1078.57711 -0.36651 -0.00019802 1.1215 0.00060592 0.75495 0.00040789 540.2963288454279 17.02 0.21003 15.748 15.625 15.835 -1.2722 -0.054664 0.00077127 NaN 6.2058 12 5 3 NaN NaN NaN NaN 0 NaN NaN 0 763080 + 50229 16584 33403 33424 0.04096243846242942 VGTKEIIKR 9 Unmodified _VGTKEIIKR_ 0 0 0 REV__tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1 REV__tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2592163085938 2 522.332216 1042.64988 NaN NaN NaN NaN NaN NaN NaN 13.847 1 12.636 12.136 13.136 -1.2106 0 0 0 0.23508 1 1787 1787 0.6015 0 1 + 50230 24897 33404 33425 49226 49226 0.13025997639647358 VGTKILKR 8 Unmodified _VGTKILKR_ 0 0 0 REV__tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1 REV__tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22027587890625 2 457.810919 913.607286 NaN NaN NaN NaN NaN NaN NaN 14.085 1 12.97 12.47 13.47 -1.1142 0 0 0 0.21486 1 2087 2087 0.79363 0 1 + 50231 24927 33405 33426 49227 49227 0.147026473020901 VGTKVQDRTSL 11 Unmodified _VGTKVQDRTSL_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.280029296875 2 602.338227 1202.6619 NaN NaN NaN NaN NaN NaN NaN 122.91 1 118.34 117.84 118.84 -4.5757 0 0 0 0.23379 1 24232 24232 5.2969 0 1 50232 7760 33406 33427 49228 49228 0.06867569592191103 VGTLCLVKF 9 Unmodified _VGTLCLVKF_ 0 0 0 ENST00000361731.3_1_6:166733608-166733677:-|nuORF ENST00000361731.3_1_6:166733608-166733677:-|nuORF ENST00000361731.3_1_6:166733608-166733677:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2718811035156 2 490.285889 978.557224 NaN NaN NaN NaN NaN NaN NaN 30.453 1 28.56 28.06 29.06 -1.8928 0 0 0 0.23508 1 5221 5221 8.5933 2.2392 1 50233 9034 33407 33428 49229 49229 0.06708776581922393 VGTLEGVTRY 10 Unmodified _VGTLEGVTRY_ 0 0 0 REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7730712890625 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 94.194 1 90.203 89.703 90.703 -3.9907 0 0 0 0.22588 1 18454 18454 7.2892 0.56607 1 + 50234 19181 33408 33429 49230 49230 0.03372824126381602 VGTLEGVTRY 10 Unmodified _VGTLEGVTRY_ 0 0 0 REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7733764648438 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 93.777 1 89.933 89.433 90.433 -3.844 0 0 0 0.22588 1 17981 17981 6.7232 2.3939 1 + 50235 19181 33408 33429 49231 49231 0.03372824126381602 VGTLEGVTRY 10 Unmodified _VGTLEGVTRY_ 0 0 0 REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7691040039062 2 547.795663 1093.57677 -0.023423 -1.2831E-05 -1.9799 -0.0010846 -2.0034 -0.0010974 547.7955190706585 46.414 0.52112 43.548 43.232 43.753 -2.8665 15 14 2 0 0 0 0.78938 1 8413 8413 21.537 12.944 1 923750 + 50236 19181 33408 33429 49232 49232 0.03372824126381602 VGTLKRKNK 9 Unmodified _VGTLKRKNK_ 0 0 0 ENST00000243298.2_1_X:103080673-103087036:-|nuORF ENST00000243298.2_1_X:103080673-103087036:-|nuORF ENST00000243298.2_1_X:103080673-103087036:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2659912109375 2 522.337833 1042.66111 NaN NaN NaN NaN NaN NaN NaN 123.51 1 118.78 118.28 119.28 -4.731 0 0 0 0.19624 1 23728 23728 0 0 1 50237 8194 33409 33430 49233 49233 0.14148819733782148 VGTLLPDHQ 9 Unmodified _VGTLLPDHQ_ 0 0 0 REV__nc|ENSG00000133136|A0A804HLA8|GNG5B REV__nc|ENSG00000133136|A0A804HLA8|GNG5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2642517089844 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 64.495 1 61.497 60.997 61.997 -2.9975 0 0 0 0.19679 1 12475 12475 0.40827 0.28045 1 + 50238 18389 33410 33431 49234 49234 0.023328834091330464 VGTMAWVR 8 Unmodified _VGTMAWVR_ 0 0 0 ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2 ENST00000567039.1_1_15:43620629-43622752:-|nuORF ENST00000567039.1_1_15:43620629-43622752:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2450866699219 2 460.244555 918.474557 NaN NaN NaN NaN NaN NaN NaN 159.54 1 154.27 153.77 154.77 -5.2748 0 0 0 0.21486 1 30967 30967 9.3474 0 1 50239 5936 33411 33432 49235 49235 0.012058795737743822 VGTMYAVFYYR 11 Unmodified _VGTMYAVFYYR_ 0 0 0 REV__ENST00000485101.5_1_3:186505247-186505556:+|nuORF REV__ENST00000485101.5_1_3:186505247-186505556:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.9970703125 4 343.170687 1368.65364 -0.46278 -0.00015881 -0.026157 -8.9764E-06 -0.48894 -0.00016779 343.4214761137593 17.103 0.20607 15.831 15.696 15.902 -1.2722 12 5 3 0 0 0 0.96225 1 2481 2481 0.45452 0.37117 1 311330 + 50240 21997 33412 33433 49236 49236 -0.015937006487774852 VGTNGGLK 8 Unmodified _VGTNGGLK_ 0 0 0 nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2 nc|ENSG00000145934|Q9NT68-2|TENM2 nc|ENSG00000145934|Q9NT68-2|TENM2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.0923767089844 2 373.213778 744.413003 -0.17603 -6.5699E-05 -1.1505 -0.00042939 -1.3265 -0.00049509 373.2131817349966 123.6 0.81705 123.6 123.24 124.06 0 55 22 3 0 0 0 1.028 1 24293 24293 0.79363 0 1 5534000 50241 4630 33413 33434 49237 49237 0.030572711461331892 VGTNGGLK 8 Unmodified _VGTNGGLK_ 0 0 0 nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2 nc|ENSG00000145934|Q9NT68-2|TENM2 nc|ENSG00000145934|Q9NT68-2|TENM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 373.213778 744.413003 -0.18766 -7.0036E-05 -1.0124 -0.00037784 -1.2001 -0.00044788 373.21318344782327 128.45 1.0678 123.82 123.4 124.47 -4.6292 -0.0032054 0.00013452 NaN 0.79363 60 29 3 NaN NaN NaN NaN 0 NaN NaN 0 4189300 50242 4630 33413 33434 0.030572711461331892 VGTNGGLK 8 Unmodified _VGTNGGLK_ 0 0 0 nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2 nc|ENSG00000145934|Q9NT68-2|TENM2 nc|ENSG00000145934|Q9NT68-2|TENM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 373.213778 744.413003 0.12328 4.6011E-05 -1.593 -0.00059454 -1.4698 -0.00054853 373.21307055279743 128.73 1.03 123.91 123.37 124.4 -4.817 0.087412 -0.00029889 NaN 0.79363 71 28 3 NaN NaN NaN NaN 0 NaN NaN 0 13660000 50243 4630 33413 33434 0.030572711461331892 VGTNGGLK 8 Unmodified _VGTNGGLK_ 0 0 0 nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2 nc|ENSG00000145934|Q9NT68-2|TENM2 nc|ENSG00000145934|Q9NT68-2|TENM2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 373.213778 744.413003 -0.52791 -0.00019702 -0.87295 -0.0003258 -1.4009 -0.00052282 373.2133233248514 128.71 1.0178 123.97 123.27 124.29 -4.7408 0.14058 0.0002386 NaN 0.79363 64 28 3 NaN NaN NaN NaN 0 NaN NaN 0 5799200 50244 4630 33413 33434 0.030572711461331892 VGTPAWTPS 9 Unmodified _VGTPAWTPS_ 0 0 0 KIAA1614|p.N687Mfs*3|1|0.24|ENSG00000135835|chr1:180935966-180935966|A/-|frameshift_variant;ENSG00000135835|ENST00000367588|KIAA1614 KIAA1614|p.N687Mfs*3|1|0.24|ENSG00000135835|chr1:180935966-180935966|A/-|frameshift_variant KIAA1614|p.N687Mfs*3|1|0.24|ENSG00000135835|chr1:180935966-180935966|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2333068847656 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 161.55 1 156.76 156.26 157.26 -4.7898 0 0 0 0.19652 1 32130 32130 0.029283 0 1 50245 3957 33414 33435 49238 49238 -0.01086477027968158 VGTPGGVS 8 Unmodified _VGTPGGVS_ 0 0 0 ENST00000496353.1_1_1:1254237-1254918:-|nuORF ENST00000496353.1_1_1:1254237-1254918:-|nuORF ENST00000496353.1_1_1:1254237-1254918:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.18060302734375 2 337.179404 672.344254 NaN NaN NaN NaN NaN NaN NaN 26.089 1 24.454 23.954 24.954 -1.6347 0 0 0 0.21486 1 4315 4315 2.5775 0 1 50246 10573 33415 33436 49239 49239 -0.005023931535674819 VGTPKERK 8 Unmodified _VGTPKERK_ 0 0 0 nc|ENSG00000215421|Q9C0G0-2|ZNF407;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407 nc|ENSG00000215421|Q9C0G0-2|ZNF407 nc|ENSG00000215421|Q9C0G0-2|ZNF407 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.03155517578125 3 305.518781 913.534515 -0.50635 -0.0001547 0.27151 8.2951E-05 -0.23484 -7.1748E-05 305.51881802969245 20.477 0.28697 20.477 20.276 20.562 0 12 7 2 0 0 0 1.0281 1 3381 3381 0 0 1 738480 50247 7747 33416 33437 49240 49240 0.07428893508665624 VGTPKTVQ 8 Unmodified _VGTPKTVQ_ 0 0 0 ENST00000524270.5_1_12:6981776-6982483:-|nuORF ENST00000524270.5_1_12:6981776-6982483:-|nuORF ENST00000524270.5_1_12:6981776-6982483:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.2535705566406 2 415.242535 828.470518 NaN NaN NaN NaN NaN NaN NaN 105.78 1 101.51 101.01 102.01 -4.2638 0 0 0 0.21486 1 20821 20821 8.5933 0 1 50248 10878 33417 33438 49241 49241 0.04942113351705757 VGTPQYLDMK 10 Unmodified _VGTPQYLDMK_ 0 0 0 REV__tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1 REV__tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3287963867188 2 576.291899 1150.56925 NaN NaN NaN NaN NaN NaN NaN 119.11 1 114.6 114.1 115.1 -4.502 0 0 0 2.8426 1 23487 23487 0.20733 0 1 + 50249 25109 33418 33439 49242 49242 -1.6514655499122455E-05 VGTPRSQDP 9 Unmodified _VGTPRSQDP_ 0 0 0 REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.74267578125 2 478.743431 955.472308 NaN NaN NaN NaN NaN NaN NaN 21.635 1 21.635 21.135 22.135 0 0 0 0 0.21844 1 3626 3626 18.146 1.0335 1 + 50250 17933 33419 33440 49243 49243 -0.007208776303286868 VGTPSEPDSR 10 Unmodified _VGTPSEPDSR_ 0 0 0 REV__ENST00000508420.1_1_5:114961572-114968571:-|nuORF REV__ENST00000508420.1_1_5:114961572-114968571:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.07427978515625 3 348.836727 1043.48835 NaN NaN NaN NaN NaN NaN NaN 143.27 1 138.24 137.74 138.74 -5.0261 0 0 0 0.22588 1 27621 27621 0.62683 0 1 + 50251 22512 33420 33441 49244 49244 -0.03165216184106612 VGTPSLYH 8 Unmodified _VGTPSLYH_ 0 0 0 REV__ENST00000483495.5_1_20:34218821-34220289:-|nuORF REV__ENST00000483495.5_1_20:34218821-34220289:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21710205078125 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 113.22 1 108.69 108.19 109.19 -4.5259 0 0 0 0.21486 1 21732 21732 6.3541 0 1 + 50252 19658 33421 33442 49245 49245 -0.0021045968238695423 VGTPWGLCRP 10 Unmodified _VGTPWGLCRP_ 0 0 0 REV__ENST00000248248.7_1_16:77232551-77232653:+|nuORF REV__ENST00000248248.7_1_16:77232551-77232653:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7706298828125 2 543.281669 1084.54878 NaN NaN NaN NaN NaN NaN NaN 18.629 1 18.629 18.129 19.129 0 0 0 0 0.22588 1 3008 3008 6.7232 0.51738 1 + 50253 20104 33422 33443 49246 49246 0.009892226652937097 VGTQAPPQ 8 Unmodified _VGTQAPPQ_ 0 0 0 REV__CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant REV__CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 398.8830871582031 2 399.211235 796.407917 NaN NaN NaN NaN NaN NaN NaN 87.998 1 84.205 83.705 84.705 -3.7926 0 0 0 0.23487 1 17210 17210 0.063987 0 1 + 50254 13580 33423 33444 49247 49247 0.0015696728352168066 VGTQQHPGH 9 Unmodified _VGTQQHPGH_ 0 0 0 ENST00000265563.12_1_3:48784702-48784864:-|nuORF ENST00000265563.12_1_3:48784702-48784864:-|nuORF ENST00000265563.12_1_3:48784702-48784864:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23748779296875 2 480.73594 959.457327 0.037 1.7787E-05 -1.2676 -0.00060939 -1.2306 -0.00059161 480.7353735206564 36.774 0.7065 36.774 36.42 37.126 0 29 19 2 0 0 0 0.5059 1 6823 6823 19.257 1.1106 1 1297200 50255 8359 33424 33445 49248 49248 -0.02402324707668413 VGTQQHPGH 9 Unmodified _VGTQQHPGH_ 0 0 0 ENST00000265563.12_1_3:48784702-48784864:-|nuORF ENST00000265563.12_1_3:48784702-48784864:-|nuORF ENST00000265563.12_1_3:48784702-48784864:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23388671875 2 480.73594 959.457327 -0.27105 -0.0001303 -1.108 -0.00053265 -1.379 -0.00066295 480.7354517081136 39.095 1.1616 36.546 35.873 37.035 -2.5491 51 32 2 0 0 0 0.5059 1 7196 7196 19.257 4.4187 1 2193200 50256 8359 33424 33445 49249 49249 -0.02402324707668413 VGTQRIYT 8 Unmodified _VGTQRIYT_ 0 0 0 REV__MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant REV__MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1700439453125 3 313.174903 936.50288 -0.6274 -0.00019649 0.51795 0.00016221 -0.10946 -3.428E-05 313.1750068493418 26.622 0.65215 24.699 24.436 25.088 -1.9222 38 18 3 0 0 0 0.88811 1 4473 4473 0.45834 0 1 2460400 + 50257 14601 33425 33446 49250 49250 0.0320890075471425 VGTQRIYT 8 Unmodified _VGTQRIYT_ 0 0 0 REV__MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant REV__MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 313.174903 936.50288 -0.43951 -0.00013764 0.25732 8.0585E-05 -0.18219 -5.7059E-05 313.17496541301387 24.821 0.53751 24.821 24.58 25.118 0 0.045861 3.9667E-06 NaN 0.45834 36 15 4 NaN NaN NaN NaN 0 NaN NaN 0 3712900 + 50258 14601 33425 33446 0.0320890075471425 VGTQRIYT 8 Unmodified _VGTQRIYT_ 0 0 0 REV__MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant REV__MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 313.174903 936.50288 -0.6274 -0.00019649 0.51795 0.00016221 -0.10946 -3.428E-05 313.1750068493418 26.622 0.65215 24.699 24.436 25.088 -1.9222 -0.075624 0.00024884 NaN 0.45834 38 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2460400 + 50259 14601 33425 33446 0.0320890075471425 VGTQTHLFY 9 Unmodified _VGTQTHLFY_ 0 0 0 REV__ENSG00000108854|ENST00000262435|SMURF2 REV__ENSG00000108854|ENST00000262435|SMURF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2697143554688 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 59.639 1 56.705 56.205 57.205 -2.9333 0 0 0 0.23508 1 11470 11470 12.532 1.7076 1 + 50260 15144 33426 33447 49251 49251 -0.0005883007379452465 VGTQYLAKLSA 11 Unmodified _VGTQYLAKLSA_ 0 0 0 REV__ENST00000464026.1_1_1:118426024-118439585:-|nuORF REV__ENST00000464026.1_1_1:118426024-118439585:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3291625976562 2 575.826963 1149.63937 0.38008 0.00021886 -0.90731 -0.00052245 -0.52722 -0.00030359 575.8266042956218 84.469 0.34975 84.469 84.277 84.627 0 11 9 2 0 0 0 0.58772 1 16482 16482 18.721 3.7641 1 1408200 + 50261 19252 33427 33448 49252 49252 0.07053970194579051 VGTREDDKY 9 Unmodified _VGTREDDKY_ 0 0 0 nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF nc|ENSG00000106348|P20839-2|IMPDH1 nc|ENSG00000106348|P20839-2|IMPDH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2713623046875 2 541.759278 1081.504 -0.13501 -7.3143E-05 3.5184 0.0019061 3.3834 0.001833 542.2637424730322 16.693 0.14242 15.477 15.388 15.531 -1.2159 5 3 2 0 0 0 0.84208 1 2629 2629 7.2892 0.56607 1 310770 50262 2380 33428 33449 49253 49253 -0.033489296670495605 VGTRFTAEI 9 Unmodified _VGTRFTAEI_ 0 0 0 REV__ENST00000539693.1_1_19:19313985-19314099:-|nuORF REV__ENST00000539693.1_1_19:19313985-19314099:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.170166015625 3 331.850308 992.529095 -0.29322 -9.7307E-05 0.26606 8.8291E-05 -0.027168 -9.0156E-06 331.8503369331661 66.585 0.66087 63.477 62.991 63.652 -3.1086 31 18 2 0 0 0 0.60805 1 12863 12863 8.1555 0 1 1776800 + 50263 22849 33429 33450 49254 49254 0.03253169926199462 VGTRKRKGHL 10 Unmodified _VGTRKRKGHL_ 0 0 0 ENST00000216297.6_1_14:21852202-21852280:-|nuORF ENST00000216297.6_1_14:21852202-21852280:-|nuORF ENST00000216297.6_1_14:21852202-21852280:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3320922851562 2 576.359631 1150.70471 NaN NaN NaN NaN NaN NaN NaN 142.66 1 142.66 142.16 143.16 0 0 0 0 0.22588 1 28448 28448 3.9444 0 1 50264 8110 33430 33451 49255 49255 0.13538429230948168 VGTRSAAPGP 10 Unmodified _VGTRSAAPGP_ 0 0 0 REV__ENSG00000175294|ENST00000312106|CATSPER1 REV__ENSG00000175294|ENST00000312106|CATSPER1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2301025390625 2 456.748516 911.482479 -0.33939 -0.00015502 0.63617 0.00029057 0.29678 0.00013555 456.748773666473 40.402 0.49839 37.767 37.437 37.935 -2.6348 30 13 3 0 0 0 0.46704 1 7534 7534 0.84494 0.14728 1 4477400 + 50265 18469 33431 33452 49256 49256 0.02319730094905026 VGTRSAAPGP 10 Unmodified _VGTRSAAPGP_ 0 0 0 REV__ENSG00000175294|ENST00000312106|CATSPER1 REV__ENSG00000175294|ENST00000312106|CATSPER1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 456.748516 911.482479 0.35119 0.00016041 -0.24191 -0.00011049 0.10929 4.9916E-05 456.7483916302845 37.834 0.49149 37.834 37.473 37.965 0 0.065596 -0.00027594 NaN 0.84494 33 13 3 NaN NaN NaN NaN 0 NaN NaN 0 5623800 + 50266 18469 33431 33452 0.02319730094905026 VGTRSAAPGP 10 Unmodified _VGTRSAAPGP_ 0 0 0 REV__ENSG00000175294|ENST00000312106|CATSPER1 REV__ENSG00000175294|ENST00000312106|CATSPER1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 456.748516 911.482479 -0.33939 -0.00015502 0.63617 0.00029057 0.29678 0.00013555 456.748773666473 40.402 0.49839 37.767 37.437 37.935 -2.6348 -0.0017434 0.00052618 NaN 0.84494 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4477400 + 50267 18469 33431 33452 0.02319730094905026 VGTRSAAPGP 10 Unmodified _VGTRSAAPGP_ 0 0 0 REV__ENSG00000175294|ENST00000312106|CATSPER1 REV__ENSG00000175294|ENST00000312106|CATSPER1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 456.748516 911.482479 -0.059335 -2.7101E-05 -0.21643 -9.8855E-05 -0.27577 -0.00012596 456.7486678457548 40.301 0.53415 37.761 37.429 37.963 -2.5398 -0.0071308 -0.00025267 NaN 0.84494 34 14 4 NaN NaN NaN NaN 0 NaN NaN 0 4374200 + 50268 18469 33431 33452 0.02319730094905026 VGTRSAAPGP 10 Unmodified _VGTRSAAPGP_ 0 0 0 REV__ENSG00000175294|ENST00000312106|CATSPER1 REV__ENSG00000175294|ENST00000312106|CATSPER1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 456.748516 911.482479 0.088283 4.0323E-05 0.35765 0.00016336 0.44594 0.00020368 456.74868982562657 40.201 0.63562 37.712 37.405 38.04 -2.4896 -0.056722 0.00027176 NaN 0.84494 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3157700 + 50269 18469 33431 33452 0.02319730094905026 VGTSALGY 8 Unmodified _VGTSALGY_ 0 0 0 REV__HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant REV__HERC1|p.L3887Pfs*44|1|0.06|ENSG00000103657|chr15:63640394-63640395|-/ATGAATGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 384.2012634277344 2 384.200336 766.386119 NaN NaN NaN NaN NaN NaN NaN 61.939 1 58.699 58.199 59.199 -3.2395 0 0 0 0.23711 1 11604 11604 0.12286 0.11459 1 + 50270 14895 33432 33453 49257 49257 -0.006418374650365877 VGTSARLA 8 Unmodified _VGTSARLA_ 0 0 0 ENST00000360995.8_2_12:19615511-19615634:+|nuORF ENST00000360995.8_2_12:19615511-19615634:+|nuORF ENST00000360995.8_2_12:19615511-19615634:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7262268066406 2 387.727052 773.439552 NaN NaN NaN NaN NaN NaN NaN 24.34 1 24.34 23.84 24.84 0 0 0 0 0.21486 1 4190 4190 9.3474 0 1 50271 9018 33433 33454 49258 49258 0.04376960037461686 VGTSGVNK 8 Unmodified _VGTSGVNK_ 0 0 0 REV__ENSG00000125686|ENST00000300651|MED1 REV__ENSG00000125686|ENST00000300651|MED1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2100524902344 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 112.18 1 112.18 111.68 112.68 0 0 0 0 0.21486 1 22069 22069 8.5933 0 1 + 50272 15823 33434 33455 49259 49259 0.018129672835243582 VGTSKVLVLL 10 Unmodified _VGTSKVLVLL_ 0 0 0 GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 515.2412719726562 2 514.839342 1027.66413 NaN NaN NaN NaN NaN NaN NaN 30.141 1 28.024 27.524 28.524 -2.1167 0 0 0 0.22588 1 5435 5435 3.9444 0 1 50273 11855 33435 33456 49260 49260 0.15140650067951356 VGTSSSGS 8 Unmodified _VGTSSSGS_ 0 0 0 REV__ENST00000452575.1_1_X:9880819-9880987:+|nuORF REV__ENST00000452575.1_1_X:9880819-9880987:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.16607666015625 2 341.156126 680.297698 NaN NaN NaN NaN NaN NaN NaN 71.687 1 68.148 67.648 68.648 -3.5385 0 0 0 0.2396 1 13592 13592 0 0 1 + 50274 21819 33436 33457 49261 49261 -0.05523877775499386 VGTSTGPT 8 Unmodified _VGTSTGPT_ 0 0 0 ENST00000557420.1_1_15:93588805-93616230:-|nuORF ENST00000557420.1_1_15:93588805-93616230:-|nuORF ENST00000557420.1_1_15:93588805-93616230:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2131042480469 2 360.182143 718.349734 NaN NaN NaN NaN NaN NaN NaN 18.574 1 17.263 16.763 17.763 -1.3109 0 0 0 0.23749 1 3024 3024 0.0082765 0 1 50275 11255 33437 33458 49262 49262 -0.020707143617642032 VGTSVGSL 8 Unmodified _VGTSVGSL_ 0 0 0 CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant;nc|ENSG00000179776|P33151-2|CDH5;CDH5|p.Y725Lfs*30|1|0.34|ENSG00000179776|chr16:66402979-66402980|-/C|frameshift_variant;ENSG00000179776|ENST00000341529|CDH5 CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 123.74 1 119.01 118.51 119.51 -4.731 0 0 0 0.2074 1 23767 23767 19.439 4.8573 1 50276 464 33438 33459 49263 49263 0.015661625349594033 VGTSVIGE 8 Unmodified _VGTSVIGE_ 0 0 0 ENST00000392481.6_2_3:186522453-186524231:-|nuORF ENST00000392481.6_2_3:186522453-186524231:-|nuORF ENST00000392481.6_2_3:186522453-186524231:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21209716796875 2 381.205618 760.396684 NaN NaN NaN NaN NaN NaN NaN 28.462 1 28.462 27.962 28.962 0 0 0 0 0.23749 1 5053 5053 0.0082765 0 1 50277 9375 33439 33460 49264 49264 0.006901451894009369 VGTSVVTV 8 Unmodified _VGTSVVTV_ 0 0 0 CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2215Wfs*26|2|0.42|ENSG00000143126|chr1:109269115-109269115|C/-|frameshift_variant;CELSR2|p.G1044Vfs*17|1|0.42|ENSG00000143126|chr1:109253206-109253206|G/-|frameshift_variant;CELSR2-KIAA1324|1|fusion CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;CELSR2-KIAA1324|1|fusion CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21759033203125 2 381.223811 760.433069 NaN NaN NaN NaN NaN NaN NaN 50.533 1 47.488 46.988 47.988 -3.0453 0 0 0 0.2396 1 9262 9262 0 0 1 50278 480;478 33440 33461 49265 49265 0.04327022086113175 VGTSVVTV 8 Unmodified _VGTSVVTV_ 0 0 0 CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2215Wfs*26|2|0.42|ENSG00000143126|chr1:109269115-109269115|C/-|frameshift_variant;CELSR2|p.G1044Vfs*17|1|0.42|ENSG00000143126|chr1:109253206-109253206|G/-|frameshift_variant;CELSR2-KIAA1324|1|fusion CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;CELSR2-KIAA1324|1|fusion CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2158508300781 2 381.223811 760.433069 NaN NaN NaN NaN NaN NaN NaN 20.344 1 18.708 18.208 19.208 -1.6351 0 0 0 0.2396 1 3127 3127 0 0 1 50279 480;478 33440 33461 49266 49266 0.04327022086113175 VGTSVVTVS 9 Unmodified _VGTSVVTVS_ 0 0 0 CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2215Wfs*26|2|0.42|ENSG00000143126|chr1:109269115-109269115|C/-|frameshift_variant;CELSR2|p.G1044Vfs*17|1|0.42|ENSG00000143126|chr1:109253206-109253206|G/-|frameshift_variant;CELSR2-KIAA1324|1|fusion CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;CELSR2-KIAA1324|1|fusion CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25494384765625 2 424.739825 847.465098 0.018209 7.734E-06 0.1754 7.45E-05 0.19361 8.2234E-05 424.7398590238801 134.25 0.75615 129.38 128.96 129.72 -4.8726 38 21 2 0 0 0 0.54354 1 25721 25721 16.942 0 1 8467900 50280 480;478 33441 33462 49267 49267 0.035263897692516366 VGTSVVTVS 9 Unmodified _VGTSVVTVS_ 0 0 0 CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2215Wfs*26|2|0.42|ENSG00000143126|chr1:109269115-109269115|C/-|frameshift_variant;CELSR2|p.G1044Vfs*17|1|0.42|ENSG00000143126|chr1:109253206-109253206|G/-|frameshift_variant;CELSR2-KIAA1324|1|fusion CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;CELSR2-KIAA1324|1|fusion CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.24163818359375 2 424.739825 847.465098 -0.068996 -2.9305E-05 0.27719 0.00011773 0.20819 8.8427E-05 424.73990243093994 134.21 0.73816 129.39 129.02 129.76 -4.8175 37 20 2 0 0 0 0.22334 2 25882 25786;25882 36.044 1.9418 1 6344500 50281 480;478 33441 33462 49268;49269 49269 0.035263897692516366 VGTTATIG 8 Unmodified _VGTTATIG_ 0 0 0 REV__ENSG00000205592|ENST00000454784|MUC19 REV__ENSG00000205592|ENST00000454784|MUC19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 113.51 1 113.51 113.01 114.01 0 0 0 0 0.21486 1 22320 22320 0.79363 0 1 + 50282 19595 33442 33463 49270 49270 0.01566162534970772 VGTTGVVS 8 Unmodified _VGTTGVVS_ 0 0 0 REV__ENSG00000182858|ENST00000330817|ALG12 REV__ENSG00000182858|ENST00000330817|ALG12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 94.287 1 94.287 93.787 94.787 0 0 0 0 0.21486 1 18462 18462 2.5775 0 1 + 50283 18805 33443 33464 49271 49271 0.015661625349594033 VGTTLLLL 8 Unmodified _VGTTLLLL_ 0 0 0 tr|U7T5A8|U7T5A8_FUSNUGlyceroluptakefacilitatorproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00505PE=3SV=1 tr|U7T5A8|U7T5A8_FUSNUGlyceroluptakefacilitatorproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00505PE=3SV=1 tr|U7T5A8|U7T5A8_FUSNUGlyceroluptakefacilitatorproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00505PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.25396728515625 2 415.273304 828.532055 NaN NaN NaN NaN NaN NaN NaN 160.98 1 155.75 155.25 156.25 -5.2299 0 0 0 0.21486 1 31261 31261 0.79363 0 1 50284 26462 33444 33465 49272 49272 0.11093045050995443 VGTTLYVP 8 Unmodified _VGTTLYVP_ 0 0 0 REV__SLC5A2|p.A120T|1|0.39|ENSG00000140675|chr16:31485783-31485783|G/A|missense_variant REV__SLC5A2|p.A120T|1|0.39|ENSG00000140675|chr16:31485783-31485783|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2386779785156 2 425.239461 848.46437 NaN NaN NaN NaN NaN NaN NaN 112.11 1 107.86 107.36 108.36 -4.2451 0 0 0 0.21486 1 21583 21583 10.183 0.83596 1 + 50285 24649 33445 33466 49273 49273 0.03407595120188489 VGTTTVTG 8 Unmodified _VGTTTVTG_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN REV__nc|ENSG00000154358|Q5VST9|OBSCN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 367.8854675292969 2 368.197793 734.381034 NaN NaN NaN NaN NaN NaN NaN 33.723 1 31.576 31.076 32.076 -2.1468 0 0 0 0.2396 1 5893 5893 0 0 1 + 50286 17178 33446 33467 49274 49274 0.003218586723505723 VGTTVQVVR 9 Unmodified _VGTTVQVVR_ 0 0 0 REV__ENST00000260570.7_1_2:27712549-27712609:-|nuORF REV__ENST00000260570.7_1_2:27712549-27712609:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.807373046875 3 320.194186 957.56073 -0.47612 -0.00015245 0.56717 0.0001816 0.091044 2.9152E-05 320.1943595263551 21.916 0.31497 21.916 21.737 22.052 0 15 8 2 0 0 0 0.88284 1 3658 3658 0.96228 0.96228 1 914370 + 50287 20159 33447 33468 49275 49275 0.08025162680144149 VGTTVQVVR 9 Unmodified _VGTTVQVVR_ 0 0 0 REV__ENST00000260570.7_1_2:27712549-27712609:-|nuORF REV__ENST00000260570.7_1_2:27712549-27712609:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 320.194186 957.56073 -1.0844 -0.00034723 0.82815 0.00026517 -0.25629 -8.2062E-05 320.1944594335908 23.626 0.31645 21.838 21.628 21.944 -1.7886 -0.038892 0.00012625 NaN 0.96228 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 397050 + 50288 20159 33447 33468 0.08025162680144149 VGTTVVGY 8 Unmodified _VGTTVVGY_ 0 0 0 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 398.20806884765625 2 398.215986 794.417419 NaN NaN NaN NaN NaN NaN NaN 69.21 1 69.21 68.71 69.71 0 0 0 0 0.21486 1 13395 13395 2.8892 0 1 50289 5176 33448 33469 49276 49276 0.011987355690507684 VGTVIGFG 8 Unmodified _VGTVIGFG_ 0 0 0 ENST00000378535.4_1_12:88890429-88890468:-|nuORF ENST00000378535.4_1_12:88890429-88890468:-|nuORF ENST00000378535.4_1_12:88890429-88890468:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2126159667969 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 67.284 1 64.175 63.675 64.675 -3.1086 0 0 0 0.22676 1 13049 13049 0.063987 0 1 50290 9282 33449 33470 49277 49277 0.027670567772474897 VGTVIGFG 8 Unmodified _VGTVIGFG_ 0 0 0 ENST00000378535.4_1_12:88890429-88890468:-|nuORF ENST00000378535.4_1_12:88890429-88890468:-|nuORF ENST00000378535.4_1_12:88890429-88890468:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2143249511719 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 153.85 1 149.08 148.58 149.58 -4.7684 0 0 0 0.22934 1 30573 30573 0.063987 0 1 50291 9282 33449 33470 49278 49278 0.027670567772474897 VGTVISIKV 9 Unmodified _VGTVISIKV_ 0 0 0 ENST00000369239.9_1_6:99848813-99848906:-|nuORF ENST00000369239.9_1_6:99848813-99848906:-|nuORF ENST00000369239.9_1_6:99848813-99848906:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.76409912109375 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 88.714 1 84.964 84.464 85.464 -3.7501 0 0 0 0.19652 1 16985 16985 0.029283 0 1 50292 9113 33450 33471 49279 49279 0.11936118971038923 VGTVKKLG 8 Unmodified _VGTVKKLG_ 0 0 0 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 401.26495361328125 2 401.263271 800.511988 NaN NaN NaN NaN NaN NaN NaN 141.2 1 141.2 140.7 141.7 0 0 0 0 0.21486 1 28126 28126 0.79363 0 1 + 50293 25443 33451 33472 49280 49280 0.10375294111054245 VGTVKKLG 8 Unmodified _VGTVKKLG_ 0 0 0 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 401.2637939453125 2 401.263271 800.511988 NaN NaN NaN NaN NaN NaN NaN 145.53 1 140.87 140.37 141.37 -4.6694 0 0 0 0.21486 1 28850 28850 0.79363 0 1 + 50294 25443 33451 33472 49281 49281 0.10375294111054245 VGTVKKLG 8 Unmodified _VGTVKKLG_ 0 0 0 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 401.2740173339844 2 401.263271 800.511988 NaN NaN NaN NaN NaN NaN NaN 145.64 1 140.97 140.47 141.47 -4.6694 0 0 0 0.21486 1 28871 28871 0.79363 0 1 + 50295 25443 33451 33472 49282 49282 0.10375294111054245 VGTVKKLG 8 Unmodified _VGTVKKLG_ 0 0 0 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 401.2638244628906 2 401.263271 800.511988 NaN NaN NaN NaN NaN NaN NaN 145.77 1 140.66 140.16 141.16 -5.1108 0 0 0 0.21486 1 28177 28177 0.79363 0 1 + 50296 25443 33451 33472 49283 49283 0.10375294111054245 VGTVKKLG 8 Unmodified _VGTVKKLG_ 0 0 0 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 401.27337646484375 2 401.263271 800.511988 NaN NaN NaN NaN NaN NaN NaN 145.81 1 140.7 140.2 141.2 -5.1108 0 0 0 0.21486 1 28188 28188 0.79363 0 1 + 50297 25443 33451 33472 49284 49284 0.10375294111054245 VGTVKKLG 8 Unmodified _VGTVKKLG_ 0 0 0 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 401.2728271484375 2 401.263271 800.511988 NaN NaN NaN NaN NaN NaN NaN 145.93 1 140.93 140.43 141.43 -5 0 0 0 0.21486 1 28230 28230 0.79363 0 1 + 50298 25443 33451 33472 49285 49285 0.10375294111054245 VGTVSPQGP 9 Unmodified _VGTVSPQGP_ 0 0 0 REV__nc|ENSG00000159140|P18583-6|SON REV__nc|ENSG00000159140|P18583-6|SON MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.30462646484375 2 421.224342 840.434132 -0.65868 -0.00027745 1.1607 0.0004889 0.50199 0.00021145 421.2248136808508 15.818 0.32016 14.602 14.514 14.834 -1.2159 10 8 2 0 0 0 0.86532 1 2479 2479 8.5933 2.8329 1 461430 + 50299 17359 33452 33473 49286 49286 0.007532364550115744 VGTVSPQGP 9 Unmodified _VGTVSPQGP_ 0 0 0 REV__nc|ENSG00000159140|P18583-6|SON REV__nc|ENSG00000159140|P18583-6|SON MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 421.224342 840.434132 -0.026498 -1.1162E-05 0.55209 0.00023256 0.5256 0.00022139 421.2244346519652 14.896 0.21226 14.896 14.772 14.984 0 0.14691 -0.00022616 NaN 8.5933 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 706840 + 50300 17359 33452 33473 0.007532364550115744 VGTVTDTHGA 10 Unmodified _VGTVTDTHGA_ 0 0 0 REV__ENST00000546525.5_1_6:169959876-170034596:-|nuORF REV__ENST00000546525.5_1_6:169959876-170034596:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7327880859375 2 479.235439 956.456324 -0.079049 -3.7883E-05 -0.18546 -8.8877E-05 -0.26451 -0.00012676 479.23541802679864 18.197 0.45871 16.886 16.649 17.108 -1.3109 22 12 2 0 0 0 0.83242 1 2964 2964 20.454 6.0482 1 784060 + 50301 18900 33453 33474 49287 49287 -0.023645838672223363 VGTVTDTHGA 10 Unmodified _VGTVTDTHGA_ 0 0 0 REV__ENST00000546525.5_1_6:169959876-170034596:-|nuORF REV__ENST00000546525.5_1_6:169959876-170034596:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.235439 956.456324 -0.1311 -6.2827E-05 0.13736 6.5829E-05 0.006266 3.0029E-06 479.23551251214866 16.968 0.52803 16.968 16.714 17.242 0 0.08627 -0.00021123 NaN 20.454 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 824600 + 50302 18900 33453 33474 -0.023645838672223363 VGTVTEEAR 9 Unmodified _VGTVTEEAR_ 0 0 0 REV__SYNPO2L|p.A25Gfs*11|1|0.37|ENSG00000166317|chr10:73655849-73655850|-/C|frameshift_variant REV__SYNPO2L|p.A25Gfs*11|1|0.37|ENSG00000166317|chr10:73655849-73655850|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2494812011719 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 126.02 1 121.42 120.92 121.92 -4.5984 0 0 0 0.22251 1 24844 24844 16.942 1.0951 1 + 50303 24763 33454 33475 49288 49288 0.005799891668630153 VGTVTMGPSA 10 Unmodified _VGTVTMGPSA_ 0 0 0 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2317810058594 2 460.23131 918.448068 NaN NaN NaN NaN NaN NaN NaN 33.888 1 31.57 31.07 32.07 -2.3175 0 0 0 0.22588 1 6209 6209 10.824 2.9138 1 50304 3327 33455 33476 49289 49289 -0.014418541082136471 VGTVYSQPEHQ 11 Unmodified _VGTVYSQPEHQ_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant;nc|ENSG00000115155|Q9HC10-5|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7647094726562 2 622.798934 1243.58332 NaN NaN NaN NaN NaN NaN NaN 156.44 1 151.17 150.67 151.67 -5.2712 0 0 0 0.22862 1 30340 30340 9.3831 0.63772 1 50305 2824 33456 33477 49290 49290 -0.028732827129033467 VGTYGHGDH 9 Unmodified _VGTYGHGDH_ 0 0 0 ENST00000588708.5_1_19:38900682-38904049:-|nuORF ENST00000588708.5_1_19:38900682-38904049:-|nuORF ENST00000588708.5_1_19:38900682-38904049:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.15582275390625 3 314.806991 941.399144 NaN NaN NaN NaN NaN NaN NaN 44.418 1 41.628 41.128 42.128 -2.79 0 0 0 0.23508 1 8346 8346 1.1933 0.735 1 50306 11574 33457 33478 49291 49291 -0.0739000635295497 VGTYNTLLSR 10 Unmodified _VGTYNTLLSR_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2052917480469 3 375.208384 1122.60332 NaN NaN NaN NaN NaN NaN NaN 32.975 1 30.828 30.328 31.328 -2.1468 0 0 0 0.22588 1 5739 5739 12.175 0 1 50307 1282 33458 33479 49292 49292 0.04692513017721467 VGTYNTLLSR 10 Unmodified _VGTYNTLLSR_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2081298828125 3 375.208384 1122.60332 NaN NaN NaN NaN NaN NaN NaN 144.24 1 139.17 138.67 139.67 -5.0671 0 0 0 2.8426 1 27819 27819 0.26539 0 1 50308 1282 33458 33479 49293 49293 0.04692513017721467 VGTYNTLLSR 10 Unmodified _VGTYNTLLSR_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.20806884765625 3 375.208384 1122.60332 -0.73786 -0.00027685 0.72276 0.00027119 -0.015099 -5.6651E-06 375.20867895121705 52.578 0.38578 49.483 49.304 49.69 -3.0954 19 10 3 0 0 0 0.53029 1 9741 9741 0.043787 0 1 1102800 50309 1282 33458 33479 49294 49294 0.04692513017721467 VGVAAAAL 8 Unmodified _VGVAAAAL_ 0 0 0 ENST00000318789.8_1_3:71006977-71007181:-|nuORF ENST00000318789.8_1_3:71006977-71007181:-|nuORF ENST00000318789.8_1_3:71006977-71007181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.50897216796875 2 336.207964 670.401375 NaN NaN NaN NaN NaN NaN NaN 28.254 1 28.254 27.754 28.754 0 0 0 0 0.2396 1 5012 5012 0 0 1 50310 8695 33459 33480 49295 49295 0.05299074122785896 VGVAGCAL 8 Unmodified _VGVAGCAL_ 0 0 0 REV__ENST00000591635.5_1_18:34124550-34298500:+|nuORF REV__ENST00000591635.5_1_18:34124550-34298500:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 345.1697082519531 2 345.186174 688.357796 NaN NaN NaN NaN NaN NaN NaN 126.03 1 121.43 120.93 121.93 -4.5984 0 0 0 0.21486 1 24846 24846 2.8892 0 1 + 50311 23341 33460 33481 49296 49296 0.0011514135400148007 VGVALQLK 8 Unmodified _VGVALQLK_ 0 0 0 REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.2571105957031 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 18.778 1 17.467 16.967 17.967 -1.3109 0 0 0 0.21486 1 3068 3068 0.79363 0 1 + 50312 20085 33461 33482 49297 49297 0.10743580628070504 VGVALQLK 8 Unmodified _VGVALQLK_ 0 0 0 REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 414.2689208984375 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 134.06 1 129.24 128.74 129.74 -4.8175 0 0 0 0.2396 1 25810 25810 0 0 1 + 50313 20085 33461 33482 49298 49298 0.10743580628070504 VGVDSLIGPET 11 Unmodified _VGVDSLIGPET_ 0 0 0 nc|ENSG00000070785|Q9NR50-3|EIF2B3;nc|ENSG00000070785|Q9NR50-2|EIF2B3;ENSG00000070785|ENST00000360403|EIF2B3 nc|ENSG00000070785|Q9NR50-3|EIF2B3 nc|ENSG00000070785|Q9NR50-3|EIF2B3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7874145507812 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 164.17 1 159.38 158.88 159.88 -4.7898 0 0 0 0.22632 1 32787 32787 0.00056442 0 1 50314 1438 33462 33483 49299 49299 0.021096981696246075 VGVEAHRVTR 10 Unmodified _VGVEAHRVTR_ 0 0 0 ENST00000368463.7_2_1:154919005-154919101:-|nuORF ENST00000368463.7_2_1:154919005-154919101:-|nuORF ENST00000368463.7_2_1:154919005-154919101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2159729003906 3 375.215873 1122.62579 NaN NaN NaN NaN NaN NaN NaN 83.874 1 83.874 83.374 84.374 0 0 0 0 2.8426 1 16354 16354 0.043787 0 1 50315 9098 33463 33484 49300 49300 0.06938157205991047 VGVEAHRVTR 10 Unmodified _VGVEAHRVTR_ 0 0 0 ENST00000368463.7_2_1:154919005-154919101:-|nuORF ENST00000368463.7_2_1:154919005-154919101:-|nuORF ENST00000368463.7_2_1:154919005-154919101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2162780761719 3 375.215873 1122.62579 NaN NaN NaN NaN NaN NaN NaN 129.6 1 124.78 124.28 125.28 -4.817 0 0 0 0.22588 1 24881 24881 1.7423 0 1 50316 9098 33463 33484 49301 49301 0.06938157205991047 VGVERTRQ 8 Unmodified _VGVERTRQ_ 0 0 0 REV__ENST00000486440.5_1_7:100203133-100203232:+|nuORF REV__ENST00000486440.5_1_7:100203133-100203232:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.14385986328125 3 315.513919 943.519927 -0.55333 -0.00017458 0.27621 8.7149E-05 -0.27711 -8.7433E-05 315.5140115375789 17.348 0.2749 17.348 17.205 17.48 0 12 7 2 0 0 0 1.0281 1 2768 2768 0.45834 0 1 1080200 + 50317 22237 33464 33485 49302 49302 0.04590821360523023 VGVERTRQ 8 Unmodified _VGVERTRQ_ 0 0 0 REV__ENST00000486440.5_1_7:100203133-100203232:+|nuORF REV__ENST00000486440.5_1_7:100203133-100203232:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 315.513919 943.519927 -0.29384 -9.271E-05 -0.67319 -0.0002124 -0.96702 -0.00030511 315.5138567172524 18.636 0.24368 17.325 17.211 17.454 -1.3109 -0.01133 -0.00074735 NaN 0.45834 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 333870 + 50318 22237 33464 33485 0.04590821360523023 VGVESFATLR 10 Unmodified _VGVESFATLR_ 0 0 0 REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2 REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 129.27 1 124.45 123.95 124.95 -4.817 0 0 0 0.22588 1 24815 24815 3.5871 0.30575 1 + 50319 16971 33465 33486 49303 49303 0.046171279889904326 VGVFGAPC 8 Unmodified _VGVFGAPC_ 0 0 0 REV__ENST00000466618.1_1_2:242002912-242027813:+|nuORF REV__ENST00000466618.1_1_2:242002912-242027813:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2178955078125 2 375.186174 748.357796 NaN NaN NaN NaN NaN NaN NaN 98.556 1 94.599 94.099 95.099 -3.9564 0 0 0 0.23711 1 18915 18915 0.12286 0 1 + 50320 17529 33466 33487 49304 49304 -0.026448586459878243 VGVFSGGI 8 Unmodified _VGVFSGGI_ 0 0 0 ENSG00000253649|ENST00000647727|PRSS51 ENSG00000253649|ENST00000647727|PRSS51 ENSG00000253649|ENST00000647727|PRSS51 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 368.22491455078125 2 368.205421 734.39629 NaN NaN NaN NaN NaN NaN NaN 137.69 1 132.77 132.27 133.27 -4.9216 0 0 0 0.2396 1 26471 26471 0 0 1 50321 7915 33467 33488 49305 49305 0.018467702602038116 VGVGCCGC 8 Unmodified _VGVGCCGC_ 0 0 0 ENST00000592811.5_1_19:45973189-45973720:+|nuORF ENST00000592811.5_1_19:45973189-45973720:+|nuORF ENST00000592811.5_1_19:45973189-45973720:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 349.0740966796875 2 349.126945 696.239337 NaN NaN NaN NaN NaN NaN NaN 132.34 1 127.7 127.2 128.2 -4.6399 0 0 0 0.21486 1 26089 26089 0.79363 0 1 50322 11637 33468 33489 49306 49306 -0.12093297217654708 VGVGCCGC 8 Unmodified _VGVGCCGC_ 0 0 0 ENST00000592811.5_1_19:45973189-45973720:+|nuORF ENST00000592811.5_1_19:45973189-45973720:+|nuORF ENST00000592811.5_1_19:45973189-45973720:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 349.1763000488281 2 349.126945 696.239337 NaN NaN NaN NaN NaN NaN NaN 153.19 1 147.92 147.42 148.42 -5.2669 0 0 0 0.21486 1 29694 29694 0.79363 0 1 50323 11637 33468 33489 49307 49307 -0.12093297217654708 VGVGGACA 8 Unmodified _VGVGGACA_ 0 0 0 REV__ENST00000527160.1_1_11:614111-614513:-|nuORF REV__ENST00000527160.1_1_11:614111-614513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.15423583984375 2 317.154874 632.295196 NaN NaN NaN NaN NaN NaN NaN 15.837 1 14.616 14.116 15.116 -1.2219 0 0 0 0.21486 1 2244 2244 0.79363 0 1 + 50324 22699 33469 33490 49308 49308 -0.03566004714184601 VGVGGACA 8 Unmodified _VGVGGACA_ 0 0 0 REV__ENST00000527160.1_1_11:614111-614513:-|nuORF REV__ENST00000527160.1_1_11:614111-614513:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1546936035156 2 317.154874 632.295196 NaN NaN NaN NaN NaN NaN NaN 21.36 1 19.975 19.475 20.475 -1.3847 0 0 0 0.21486 1 3358 3358 0.79363 0 1 + 50325 22699 33469 33490 49309 49309 -0.03566004714184601 VGVGGGPE 8 Unmodified _VGVGGGPE_ 0 0 0 REV__ENST00000378679.7_1_5:132163197-132166462:-|nuORF REV__ENST00000378679.7_1_5:132163197-132166462:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.171630859375 2 336.171579 670.328604 NaN NaN NaN NaN NaN NaN NaN 13.904 1 13.904 13.404 14.404 0 0 0 0 0.2396 1 2039 2039 0 0 1 + 50326 21119 33470 33491 49310 49310 -0.019746796706272107 VGVGKASK 8 Unmodified _VGVGKASK_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 373.2220458984375 2 373.231971 744.449388 NaN NaN NaN NaN NaN NaN NaN 93.806 1 89.962 89.462 90.462 -3.844 0 0 0 0.21486 1 17988 17988 0.79363 0 1 50327 5053 33471 33492 49311 49311 0.06694148042845427 VGVGLTSS 8 Unmodified _VGVGLTSS_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013854980469 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 151.64 1 151.64 151.14 152.14 0 0 0 0 0.21486 1 30372 30372 2.5775 0 1 50328 6721 33472 33493 49312 49312 0.015661625349594033 VGVGLTSS 8 Unmodified _VGVGLTSS_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015075683594 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 84.764 1 81.053 80.553 81.553 -3.7117 0 0 0 0.21486 1 16190 16190 2.8892 0 1 50329 6721 33472 33493 49313 49313 0.015661625349594033 VGVGSATG 8 Unmodified _VGVGSATG_ 0 0 0 REV__ENSG00000144119|ENST00000272520|C1QL2 REV__ENSG00000144119|ENST00000272520|C1QL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.50579833984375 2 324.171579 646.328604 NaN NaN NaN NaN NaN NaN NaN 28.951 1 28.951 28.451 29.451 0 0 0 0 0.2396 1 5158 5158 0 0 1 + 50330 16770 33473 33494 49314 49314 -0.008706796706292153 VGVGSATG 8 Unmodified _VGVGSATG_ 0 0 0 REV__ENSG00000144119|ENST00000272520|C1QL2 REV__ENSG00000144119|ENST00000272520|C1QL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1710205078125 2 324.171579 646.328604 NaN NaN NaN NaN NaN NaN NaN 69.046 1 65.51 65.01 66.01 -3.5362 0 0 0 0.21486 1 12994 12994 0.79363 0 1 + 50331 16770 33473 33494 49315 49315 -0.008706796706292153 VGVGSATG 8 Unmodified _VGVGSATG_ 0 0 0 REV__ENSG00000144119|ENST00000272520|C1QL2 REV__ENSG00000144119|ENST00000272520|C1QL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1441955566406 2 324.171579 646.328604 NaN NaN NaN NaN NaN NaN NaN 69.113 1 65.577 65.077 66.077 -3.5362 0 0 0 0.21486 1 13008 13008 0.79363 0 1 + 50332 16770 33473 33494 49316 49316 -0.008706796706292153 VGVGSTSL 8 Unmodified _VGVGSTSL_ 0 0 0 REV__nc|ENSG00000211937|P01817|IGHV2-5 REV__nc|ENSG00000211937|P01817|IGHV2-5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015075683594 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 98.734 1 98.734 98.234 99.234 0 0 0 0 0.21486 1 19355 19355 2.8892 0 1 + 50333 24259 33474 33495 49317 49317 0.015661625349594033 VGVGSTSL 8 Unmodified _VGVGSTSL_ 0 0 0 REV__nc|ENSG00000211937|P01817|IGHV2-5 REV__nc|ENSG00000211937|P01817|IGHV2-5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20172119140625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 100.74 1 96.577 96.077 97.077 -4.1594 0 0 0 0.21486 1 19801 19801 2.8892 0 1 + 50334 24259 33474 33495 49318 49318 0.015661625349594033 VGVGSTSL 8 Unmodified _VGVGSTSL_ 0 0 0 REV__nc|ENSG00000211937|P01817|IGHV2-5 REV__nc|ENSG00000211937|P01817|IGHV2-5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20159912109375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 102.29 1 97.968 97.468 98.468 -4.3208 0 0 0 0.21486 1 19585 19585 2.8892 0 1 + 50335 24259 33474 33495 49319 49319 0.015661625349594033 VGVGSTSL 8 Unmodified _VGVGSTSL_ 0 0 0 REV__nc|ENSG00000211937|P01817|IGHV2-5 REV__nc|ENSG00000211937|P01817|IGHV2-5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 153.18 1 147.92 147.42 148.42 -5.2669 0 0 0 0.21486 1 29693 29693 2.5775 0 1 + 50336 24259 33474 33495 49320 49320 0.015661625349594033 VGVGWRRK 8 Unmodified _VGVGWRRK_ 0 0 0 REV__KLHL1|p.G638W|1|0.43|ENSG00000150361|chr13:69719472-69719472|C/A|missense_variant REV__KLHL1|p.G638W|1|0.43|ENSG00000150361|chr13:69719472-69719472|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.8621826171875 3 319.862882 956.566818 NaN NaN NaN NaN NaN NaN NaN 18.233 1 18.233 17.733 18.733 0 0 0 0 0.21486 1 2922 2922 0.45834 0 1 + 50337 23722 33475 33496 49321 49321 0.08679725702324959 VGVHPSPG 8 Unmodified _VGVHPSPG_ 0 0 0 ENST00000588984.5_1_19:3751026-3754498:-|nuORF;ENSG00000011132|ENST00000316757|APBA3 ENST00000588984.5_1_19:3751026-3754498:-|nuORF ENST00000588984.5_1_19:3751026-3754498:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2212829589844 2 375.20067 748.386788 NaN NaN NaN NaN NaN NaN NaN 100.57 1 100.57 100.07 101.07 0 0 0 0 0.21486 1 19733 19733 2.8892 0 1 50338 1069 33476 33497 49322 49322 0.002530019746700418 VGVIFFLVVL 10 Unmodified _VGVIFFLVVL_ 0 0 0 REV__ENST00000476395.1_1_20:57015848-57019288:+|nuORF REV__ENST00000476395.1_1_20:57015848-57019288:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.23834228515625 3 369.238844 1104.6947 NaN NaN NaN NaN NaN NaN NaN 157.67 1 157.67 157.17 158.17 0 0 0 0 0.22588 1 31649 31649 0.77653 0.50751 1 + 50339 15754 33477 33498 49323 49323 0.14654428452990942 VGVILAQPLR 10 Unmodified _VGVILAQPLR_ 0 0 0 REV__ENSG00000122254|ENST00000261374|HS3ST2 REV__ENSG00000122254|ENST00000261374|HS3ST2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2734985351562 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 158.23 1 152.96 152.46 153.46 -5.2712 0 0 0 2.8426 1 30701 30701 0 0 1 + 50340 15682 33478 33499 49324 49324 0.14086588019290502 VGVIQFGPY 9 Unmodified _VGVIQFGPY_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26434326171875 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 51.684 1 48.802 48.302 49.302 -2.8824 0 0 0 0.21408 1 9823 9823 19.439 1.304 1 50341 3214 33479 33500 49325 49325 0.027349729028514957 VGVKERIK 8 Unmodified _VGVKERIK_ 0 0 0 nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT nc|ENSG00000137948|Q58F21-5|BRDT nc|ENSG00000137948|Q58F21-5|BRDT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16925048828125 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 14.49 1 14.49 13.99 14.99 0 0 0 0 0.21486 1 2160 2160 3.9444 0 1 50342 4128 33480 33501 49326 49326 0.1198605692242154 VGVKERIK 8 Unmodified _VGVKERIK_ 0 0 0 nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT nc|ENSG00000137948|Q58F21-5|BRDT nc|ENSG00000137948|Q58F21-5|BRDT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1653747558594 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 14.778 1 14.778 14.278 15.278 0 0 0 0 0.2386 1 2221 2221 0.12286 0 1 50343 4128 33480 33501 49327 49327 0.1198605692242154 VGVKERIK 8 Unmodified _VGVKERIK_ 0 0 0 nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT nc|ENSG00000137948|Q58F21-5|BRDT nc|ENSG00000137948|Q58F21-5|BRDT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1694641113281 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 15.426 1 14.072 13.572 14.572 -1.3534 0 0 0 0.21486 1 2123 2123 1.6526 0 1 50344 4128 33480 33501 49328 49328 0.1198605692242154 VGVKQTES 8 Unmodified _VGVKQTES_ 0 0 0 ENST00000400275.2_1_Y:15398697-15399255:+|nuORF ENST00000400275.2_1_Y:15398697-15399255:+|nuORF ENST00000400275.2_1_Y:15398697-15399255:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2439270019531 2 424.229625 846.444697 0.21658 9.1879E-05 0.119 5.0481E-05 0.33557 0.00014236 424.2296097504194 20.875 0.35691 19.401 19.24 19.597 -1.4742 22 9 3 0 0 0 8448 1 3487 3487 0.0082765 0 1 3250600 50345 9508 33481 33502 49329 49329 0.015332191094216796 VGVLITTNI 9 Unmodified _VGVLITTNI_ 0 0 0 ENSG00000110852|ENST00000228438|CLEC2B;ENST00000540743.1_1_12:10010036-10015170:-|nuORF ENSG00000110852|ENST00000228438|CLEC2B ENSG00000110852|ENST00000228438|CLEC2B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2471618652344 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 125.36 1 120.76 120.26 121.26 -4.5984 0 0 0 0.1963 1 24716 24716 0.073264 0 1 50346 2593 33482 33503 49330 49330 0.09219528591347625 VGVLLKQLVPL 11 Unmodified _VGVLLKQLVPL_ 0 0 0 FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant;ENSG00000073910|ENST00000542859|FRY;FRY|p.L1623Wfs*22|1|0.44|ENSG00000073910|chr13:32224331-32224331|C/-|frameshift_variant FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.268798828125 2 589.897192 1177.77983 0.38801 0.00022889 2.9643 0.0017486 3.3523 0.0019775 589.899245117126 153.08 0.10678 147.86 147.79 147.89 -5.2209 6 2 3 0 0 0 0.8912 1 29675 29675 0 0 1 1257400 50347 1489 33483 33504 49331 49331 0.1980517391880312 VGVLLLTTNKF 11 Unmodified _VGVLLLTTNKF_ 0 0 0 REV__nc|ENSG00000164707|Q9UKG4|SLC13A4 REV__nc|ENSG00000164707|Q9UKG4|SLC13A4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 402.2862243652344 3 402.24818 1203.72271 NaN NaN NaN NaN NaN NaN NaN 123.21 1 123.21 122.71 123.71 0 0 0 0 0.23698 1 24284 24284 0.50596 0 1 + 50348 17703 33484 33505 49332 49332 0.12899706642406272 VGVMALYY 8 Unmodified _VGVMALYY_ 0 0 0 ENSG00000226288|ENST00000641896|OR52I2;ENSG00000232268|ENST00000530443|OR52I1;nc|ENSG00000226288|Q8NH67|OR52I2 ENSG00000226288|ENST00000641896|OR52I2 ENSG00000226288|ENST00000641896|OR52I2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2370300292969 2 458.235864 914.457176 NaN NaN NaN NaN NaN NaN NaN 121.79 1 117.1 116.6 117.6 -4.6873 0 0 0 0.20082 1 23381 23381 24.21 7.1234 1 50349 7790 33485 33506 49333 49333 -0.0034746075190241754 VGVMALYY 8 Unmodified _VGVMALYY_ 0 0 0 ENSG00000226288|ENST00000641896|OR52I2;ENSG00000232268|ENST00000530443|OR52I1;nc|ENSG00000226288|Q8NH67|OR52I2 ENSG00000226288|ENST00000641896|OR52I2 ENSG00000226288|ENST00000641896|OR52I2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2339172363281 2 458.235864 914.457176 NaN NaN NaN NaN NaN NaN NaN 158.93 1 153.66 153.16 154.16 -5.2748 0 0 0 0.23711 1 30849 30849 0.0082765 0 1 50350 7790 33485 33506 49334 49334 -0.0034746075190241754 VGVMALYY 8 Unmodified _VGVMALYY_ 0 0 0 ENSG00000226288|ENST00000641896|OR52I2;ENSG00000232268|ENST00000530443|OR52I1;nc|ENSG00000226288|Q8NH67|OR52I2 ENSG00000226288|ENST00000641896|OR52I2 ENSG00000226288|ENST00000641896|OR52I2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2369689941406 2 458.235864 914.457176 NaN NaN NaN NaN NaN NaN NaN 101.1 1 97.108 96.608 97.608 -3.9895 0 0 0 0.21486 1 19430 19430 11.114 2.5212 1 50351 7790 33485 33506 49335 49335 -0.0034746075190241754 VGVNRPLHQPK 11 Unmodified _VGVNRPLHQPK_ 0 0 0 REV__GARNL3|p.A385Pfs*19|1|0.15|ENSG00000136895|chr9:127342231-127342231|A/-|frameshift_variant REV__GARNL3|p.A385Pfs*19|1|0.15|ENSG00000136895|chr9:127342231-127342231|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7647705078125 2 622.864746 1243.71494 NaN NaN NaN NaN NaN NaN NaN 64.634 1 64.634 64.134 65.134 0 0 0 0 0.22632 1 12446 12446 0.026206 0 1 + 50352 23561 33486 33507 49336 49336 0.10282992165480209 VGVNRPLHQPK 11 Unmodified _VGVNRPLHQPK_ 0 0 0 REV__GARNL3|p.A385Pfs*19|1|0.15|ENSG00000136895|chr9:127342231-127342231|A/-|frameshift_variant REV__GARNL3|p.A385Pfs*19|1|0.15|ENSG00000136895|chr9:127342231-127342231|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7698364257812 2 622.864746 1243.71494 NaN NaN NaN NaN NaN NaN NaN 73.308 1 69.632 69.132 70.132 -3.6764 0 0 0 0.22632 1 13854 13854 0.026206 0 1 + 50353 23561 33486 33507 49337 49337 0.10282992165480209 VGVPEEVTV 9 Unmodified _VGVPEEVTV_ 0 0 0 RING1|p.G322Afs*54|1|0.31|ENSG00000204227|chr6:33211844-33211844|G/-|frameshift_variant RING1|p.G322Afs*54|1|0.31|ENSG00000204227|chr6:33211844-33211844|G/-|frameshift_variant RING1|p.G322Afs*54|1|0.31|ENSG00000204227|chr6:33211844-33211844|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1715393066406 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 107.73 1 107.73 107.23 108.23 0 0 0 0 0.23508 1 21182 21182 2.7352 0 1 50354 25610 33487 33508 49338 49338 0.024666589407047468 VGVPIAVPTP 10 Unmodified _VGVPIAVPTP_ 0 0 0 nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF nc|ENSG00000138443|Q9NYB9|ABI2 nc|ENSG00000138443|Q9NYB9|ABI2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1905212402344 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 34.738 1 32.462 31.962 32.962 -2.2766 0 0 0 0.22588 1 6095 6095 0.77653 0 1 50355 4172 33488 33509 49339 49339 0.08807832453999254 VGVPVAHA 8 Unmodified _VGVPVAHA_ 0 0 0 AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant;ENSG00000124608|ENST00000244571|AARS2 AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21826171875 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 47.783 1 47.783 47.283 48.283 0 0 0 0 0.2396 1 9015 9015 0 0 1 50356 3 33489 33510 49340 49340 0.03889878871370911 VGVPVAHA 8 Unmodified _VGVPVAHA_ 0 0 0 AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant;ENSG00000124608|ENST00000244571|AARS2 AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2171936035156 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 132.09 1 132.09 131.59 132.59 0 0 0 0 0.2396 1 26110 26110 0 0 1 50357 3 33489 33510 49341 49341 0.03889878871370911 VGVPVAHA 8 Unmodified _VGVPVAHA_ 0 0 0 AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant;ENSG00000124608|ENST00000244571|AARS2 AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.22027587890625 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 143.04 1 138.01 137.51 138.51 -5.0261 0 0 0 0.21486 1 27575 27575 2.8892 0 1 50358 3 33489 33510 49342 49342 0.03889878871370911 VGVPVAHA 8 Unmodified _VGVPVAHA_ 0 0 0 AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant;ENSG00000124608|ENST00000244571|AARS2 AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.218505859375 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 52.189 1 49.137 48.637 49.637 -3.0517 0 0 0 0.2396 1 9629 9629 0 0 1 50359 3 33489 33510 49343 49343 0.03889878871370911 VGVPVAHA 8 Unmodified _VGVPVAHA_ 0 0 0 AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant;ENSG00000124608|ENST00000244571|AARS2 AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2128601074219 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 52.242 1 49.147 48.647 49.647 -3.0954 0 0 0 0.2396 1 9640 9640 0 0 1 50360 3 33489 33510 49344 49344 0.03889878871370911 VGVQDSHGD 9 Unmodified _VGVQDSHGD_ 0 0 0 REV__nc|ENSG00000137449|Q7Z5Q1-7|CPEB2 REV__nc|ENSG00000137449|Q7Z5Q1-7|CPEB2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.11572265625 3 305.138518 912.393724 NaN NaN NaN NaN NaN NaN NaN 73.624 1 73.624 73.124 74.124 0 0 0 0 0.23508 1 14289 14289 0.26902 0 1 + 50361 13569 33490 33511 49345 49345 -0.06597729935424468 VGVQPAAL 8 Unmodified _VGVQPAAL_ 0 0 0 REV__tr|U7STN2|U7STN2_FUSNUPeptidedeformylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=defPE=3SV=1 REV__tr|U7STN2|U7STN2_FUSNUPeptidedeformylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=defPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 378.19952392578125 2 377.726521 753.438489 NaN NaN NaN NaN NaN NaN NaN 129.46 1 124.72 124.22 125.22 -4.7408 0 0 0 0.21486 1 24913 24913 0.79363 0 1 + 50362 25116 33491 33512 49346 49346 0.05190745668551244 VGVRFRIN 8 Unmodified _VGVRFRIN_ 0 0 0 REV__ENST00000298130.4_1_14:34903913-34904003:-|nuORF REV__ENST00000298130.4_1_14:34903913-34904003:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2355651855469 2 480.790518 959.566484 -1.3844 -0.00066559 1.5227 0.00073209 0.13833 6.6506E-05 480.7912953820799 17.299 0.38601 15.785 15.557 15.943 -1.5148 14 10 2 0 0 0 1.028 1 2471 2471 0.79363 0 1 257300 + 50363 20384 33492 33513 49347 49347 0.085083059824683 VGVRKMEL 8 Unmodified _VGVRKMEL_ 0 0 0 REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.23016357421875 3 311.184634 930.532072 NaN NaN NaN NaN NaN NaN NaN 27.677 1 27.677 27.177 28.177 0 0 0 0 0.21486 1 4889 4889 0.45834 0 1 + 50364 15647 33493 33514 49348 49348 0.06402721779340936 VGVRKRKT 8 Unmodified _VGVRKRKT_ 0 0 0 REV__ENST00000257177.8_1_1:52889499-52889643:-|nuORF REV__ENST00000257177.8_1_1:52889499-52889643:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.2110595703125 3 315.210171 942.608683 NaN NaN NaN NaN NaN NaN NaN 65.66 1 62.202 61.702 62.702 -3.4581 0 0 0 0.21486 1 12292 12292 0.45834 0 1 + 50365 20137 33494 33515 49349 49349 0.13508281390852517 VGVRLFQM 8 Unmodified _VGVRLFQM_ 0 0 0 REV__ENST00000595525.1_1_19:15871203-15871332:+|nuORF REV__ENST00000595525.1_1_19:15871203-15871332:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.181396484375 3 317.181112 948.521507 NaN NaN NaN NaN NaN NaN NaN 18.46 1 18.46 17.96 18.96 0 0 0 0 0.21486 1 2973 2973 0.45834 0 1 + 50366 23375 33495 33516 49350 49350 0.04518739124921467 VGVRVLLLRG 10 Unmodified _VGVRVLLLRG_ 0 0 0 REV__ENST00000475011.1_1_7:100230563-100231157:-|nuORF REV__ENST00000475011.1_1_7:100230563-100231157:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.278076171875 2 541.36385 1080.71315 NaN NaN NaN NaN NaN NaN NaN 155.29 1 150.04 149.54 150.54 -5.2526 0 0 0 2.8426 1 30112 30112 0 0 1 + 50367 15041 33496 33517 49351 49351 0.17601983147574174 VGVSATGE 8 Unmodified _VGVSATGE_ 0 0 0 tr|U7T594|U7T594_FUSNUElectrontransferflavoprotein-quinoneoxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00174PE=3SV=1 tr|U7T594|U7T594_FUSNUElectrontransferflavoprotein-quinoneoxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00174PE=3SV=1 tr|U7T594|U7T594_FUSNUElectrontransferflavoprotein-quinoneoxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00174PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.21240234375 2 360.182143 718.349734 NaN NaN NaN NaN NaN NaN NaN 39.9 1 37.41 36.91 37.91 -2.4896 0 0 0 0.23749 1 7128 7128 0.0082765 0 1 50368 26459 33497 33518 49352 49352 -0.020707143617642032 VGVSDHVP 8 Unmodified _VGVSDHVP_ 0 0 0 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 405.3000793457031 2 405.211235 808.407917 NaN NaN NaN NaN NaN NaN NaN 25.534 1 23.929 23.429 24.429 -1.6052 0 0 0 0.21486 1 4202 4202 2.8892 0.31174 1 + 50369 15037 33498 33519 49353 49353 -0.003950327164830014 VGVSGGVG 8 Unmodified _VGVSGGVG_ 0 0 0 ENST00000586018.5_1_19:19657205-19657403:+|nuORF ENST00000586018.5_1_19:19657205-19657403:+|nuORF ENST00000586018.5_1_19:19657205-19657403:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.18121337890625 2 316.174121 630.33369 NaN NaN NaN NaN NaN NaN NaN 139.34 1 134.39 133.89 134.89 -4.952 0 0 0 0.21486 1 26805 26805 2.8892 0 1 50370 11541 33499 33520 49354 49354 0.003736241920023531 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016906738281 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 98.514 1 98.514 98.014 99.014 0 0 0 0 0.21486 1 19311 19311 2.8892 0 1 + 50371 16307 33500 33521 49355 49355 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20166015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 98.96 1 98.96 98.46 99.46 0 0 0 0 0.21486 1 19404 19404 2.8892 0 1 + 50372 16307 33500 33521 49356 49356 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 99.509 1 99.509 99.009 100.01 0 0 0 0 0.21486 1 19514 19514 2.5775 0 1 + 50373 16307 33500 33521 49357 49357 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015075683594 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 99.961 1 99.961 99.461 100.46 0 0 0 0 0.21486 1 19606 19606 5.7604 0 1 + 50374 16307 33500 33521 49358 49358 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017822265625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 100.2 1 100.2 99.697 100.7 0 0 0 0 0.21486 1 19657 19657 5.7604 0 1 + 50375 16307 33500 33521 49359 49359 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 100.41 1 100.41 99.91 100.91 0 0 0 0 0.21486 1 19701 19701 5.7604 0 1 + 50376 16307 33500 33521 49360 49360 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20172119140625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 100.66 1 100.66 100.16 101.16 0 0 0 0 0.21486 1 19749 19749 9.3474 0 1 + 50377 16307 33500 33521 49361 49361 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017822265625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 100.91 1 100.91 100.41 101.41 0 0 0 0 0.21486 1 19796 19796 2.5775 0 1 + 50378 16307 33500 33521 49362 49362 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017822265625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 101.14 1 101.14 100.64 101.64 0 0 0 0 0.21486 1 19846 19846 5.7604 0 1 + 50379 16307 33500 33521 49363 49363 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 101.58 1 101.58 101.08 102.08 0 0 0 0 0.21486 1 19941 19941 2.5775 0 1 + 50380 16307 33500 33521 49364 49364 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016906738281 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 101.86 1 101.86 101.36 102.36 0 0 0 0 0.21486 1 20000 20000 5.7604 0 1 + 50381 16307 33500 33521 49365 49365 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21240234375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 102.07 1 102.07 101.57 102.57 0 0 0 0 0.21486 1 20046 20046 5.7604 0 1 + 50382 16307 33500 33521 49366 49366 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017822265625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 102.11 1 102.11 101.61 102.61 0 0 0 0 0.21486 1 20053 20053 5.7604 0 1 + 50383 16307 33500 33521 49367 49367 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20184326171875 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 102.66 1 102.66 102.16 103.16 0 0 0 0 0.21486 1 20163 20163 2.5775 0 1 + 50384 16307 33500 33521 49368 49368 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20166015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 103.14 1 103.14 102.64 103.64 0 0 0 0 0.21486 1 20264 20264 2.5775 0 1 + 50385 16307 33500 33521 49369 49369 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 103.41 1 103.41 102.91 103.91 0 0 0 0 0.21486 1 20319 20319 2.5775 0 1 + 50386 16307 33500 33521 49370 49370 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201416015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 104.52 1 104.52 104.02 105.02 0 0 0 0 0.21486 1 20540 20540 5.7604 0 1 + 50387 16307 33500 33521 49371 49371 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 104.98 1 104.98 104.48 105.48 0 0 0 0 0.21486 1 20636 20636 5.7604 0 1 + 50388 16307 33500 33521 49372 49372 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013854980469 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 120.31 1 120.31 119.81 120.81 0 0 0 0 0.21486 1 23717 23717 2.8892 0 1 + 50389 16307 33500 33521 49373 49373 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201416015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 102.24 1 98.055 97.555 98.555 -4.1861 0 0 0 0.21486 1 20091 20091 2.8892 0 1 + 50390 16307 33500 33521 49374 49374 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2014465332031 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 103.67 1 99.456 98.956 99.956 -4.2183 0 0 0 0.21486 1 20383 20383 2.5775 0 1 + 50391 16307 33500 33521 49375 49375 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016296386719 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 104.15 1 99.928 99.428 100.43 -4.2183 0 0 0 0.21486 1 20481 20481 5.7604 0 1 + 50392 16307 33500 33521 49376 49376 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016906738281 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 104.39 1 100.17 99.67 100.67 -4.2183 0 0 0 0.21486 1 20533 20533 5.7604 0 1 + 50393 16307 33500 33521 49377 49377 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20159912109375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 104.65 1 100.43 99.927 100.93 -4.2183 0 0 0 0.21486 1 20587 20587 5.7604 0 1 + 50394 16307 33500 33521 49378 49378 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018127441406 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 104.86 1 100.64 100.14 101.14 -4.2183 0 0 0 0.21486 1 20628 20628 5.7604 0 1 + 50395 16307 33500 33521 49379 49379 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2017517089844 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 106.89 1 102.63 102.13 103.13 -4.2638 0 0 0 0.21486 1 21043 21043 5.7604 0 1 + 50396 16307 33500 33521 49380 49380 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 107.46 1 103.14 102.64 103.64 -4.32 0 0 0 0.21486 1 21165 21165 5.7604 0 1 + 50397 16307 33500 33521 49381 49381 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015075683594 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 107.73 1 103.41 102.91 103.91 -4.32 0 0 0 0.21486 1 21218 21218 5.7604 0 1 + 50398 16307 33500 33521 49382 49382 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2075500488281 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 107.88 1 103.56 103.06 104.06 -4.32 0 0 0 0.21486 1 21252 21252 5.7604 0 1 + 50399 16307 33500 33521 49383 49383 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 107.93 1 103.61 103.11 104.11 -4.32 0 0 0 0.21486 1 21261 21261 5.7604 0 1 + 50400 16307 33500 33521 49384 49384 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 108.7 1 104.36 103.86 104.86 -4.3363 0 0 0 0.21486 1 21419 21419 5.7604 0 1 + 50401 16307 33500 33521 49385 49385 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016296386719 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 109.17 1 104.79 104.29 105.29 -4.3776 0 0 0 0.21486 1 21515 21515 5.7604 0 1 + 50402 16307 33500 33521 49386 49386 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20123291015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 111.07 1 106.65 106.15 107.15 -4.4231 0 0 0 0.21486 1 21881 21881 2.5775 0 1 + 50403 16307 33500 33521 49387 49387 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 104.22 1 99.873 99.373 100.37 -4.346 0 0 0 0.21486 1 19964 19964 2.5775 0 1 + 50404 16307 33500 33521 49388 49388 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 104.69 1 100.35 99.847 100.85 -4.346 0 0 0 0.21486 1 20059 20059 5.7604 0 1 + 50405 16307 33500 33521 49389 49389 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016906738281 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 104.94 1 100.58 100.08 101.08 -4.3614 0 0 0 0.21486 1 20112 20112 5.7604 0 1 + 50406 16307 33500 33521 49390 49390 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 107.31 1 102.9 102.4 103.4 -4.4121 0 0 0 0.21486 1 20587 20587 5.7604 0 1 + 50407 16307 33500 33521 49391 49391 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2016296386719 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 108.99 1 104.54 104.04 105.04 -4.4518 0 0 0 0.21486 1 20917 20917 2.5775 0 1 + 50408 16307 33500 33521 49392 49392 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015380859375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 109.91 1 105.46 104.96 105.96 -4.4518 0 0 0 0.21486 1 21090 21090 2.5775 0 1 + 50409 16307 33500 33521 49393 49393 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20166015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 110.19 1 105.74 105.24 106.24 -4.4518 0 0 0 0.21486 1 21147 21147 2.5775 0 1 + 50410 16307 33500 33521 49394 49394 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20147705078125 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 110.41 1 105.92 105.42 106.42 -4.4915 0 0 0 0.21486 1 21194 21194 2.5775 0 1 + 50411 16307 33500 33521 49395 49395 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.201416015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 121.84 1 117.15 116.65 117.65 -4.6873 0 0 0 0.21486 1 23390 23390 2.8892 0 1 + 50412 16307 33500 33521 49396 49396 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 101.24 1 97.254 96.754 97.754 -3.9895 0 0 0 0.21486 1 19455 19455 2.5775 0 1 + 50413 16307 33500 33521 49397 49397 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2170104980469 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 101.9 1 97.874 97.374 98.374 -4.0212 0 0 0 0.21486 1 19581 19581 5.7604 0 1 + 50414 16307 33500 33521 49398 49398 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20166015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 102.08 1 98.056 97.556 98.556 -4.0212 0 0 0 0.21486 1 19615 19615 2.5775 0 1 + 50415 16307 33500 33521 49399 49399 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017822265625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 107.08 1 102.94 102.44 103.44 -4.135 0 0 0 0.21486 1 20591 20591 2.5775 0 1 + 50416 16307 33500 33521 49400 49400 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017822265625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 107.45 1 103.32 102.82 103.82 -4.135 0 0 0 0.21486 1 20667 20667 5.7604 0 1 + 50417 16307 33500 33521 49401 49401 0.015661625349594033 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant REV__STAB2|p.D1451Efs*112|1|0.03|ENSG00000136011|chr12:103712384-103712385|-/AGTCC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201171875 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 125.29 1 120.64 120.14 121.14 -4.6495 0 0 0 0.21486 1 24105 24105 2.8892 0 1 + 50418 16307 33500 33521 49402 49402 0.015661625349594033 VGVSLPTVQK 10 Unmodified _VGVSLPTVQK_ 0 0 0 REV__ENSG00000204086|ENST00000373040|RPA4 REV__ENSG00000204086|ENST00000373040|RPA4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.1947021484375 3 343.209725 1026.60735 NaN NaN NaN NaN NaN NaN NaN 98.981 1 98.981 98.481 99.481 0 0 0 0 0.22588 1 19409 19409 0.69767 0 1 + 50419 19511 33501 33522 49403 49403 0.09510602511409161 VGVSPGHI 8 Unmodified _VGVSPGHI_ 0 0 0 ENST00000439057.5_1_1:44172836-44172971:-|nuORF ENST00000439057.5_1_1:44172836-44172971:-|nuORF ENST00000439057.5_1_1:44172836-44172971:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 383.2174072265625 2 383.216321 764.418088 NaN NaN NaN NaN NaN NaN NaN 103.95 1 99.727 99.227 100.23 -4.2183 0 0 0 0.21486 1 20440 20440 2.8892 0 1 50420 9868 33502 33523 49404 49404 0.0264557500876208 VGVSPRRRR 9 Unmodified _VGVSPRRRR_ 0 0 0 REV__CCDC74B|p.Q25R|1|0.35|ENSG00000152076|chr2:130144923-130144923|T/C|missense_variant REV__CCDC74B|p.Q25R|1|0.35|ENSG00000152076|chr2:130144923-130144923|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2745971679688 2 541.836323 1081.65809 0.35868 0.00019435 -2.1343 -0.0011565 -1.7757 -0.00096212 542.3371677199295 154.53 0.17409 149.75 149.7 149.88 -4.7791 6 4 2 0 0 0 0.65257 1 30711 30711 0 0 1 966690 + 50421 13302 33503 33524 49405 49405 0.1205298939964905 VGVSRSKDVPP 11 Unmodified _VGVSRSKDVPP_ 0 0 0 ENSG00000116991|ENST00000674635|SIPA1L2 ENSG00000116991|ENST00000674635|SIPA1L2 ENSG00000116991|ENST00000674635|SIPA1L2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21807861328125 3 380.8839 1139.62987 -0.14346 -5.464E-05 -0.32249 -0.00012283 -0.46595 -0.00017747 381.2179291635044 21.105 0.17681 21.105 21.017 21.194 0 6 4 2 0 0 0 0.81642 1 3531 3531 1.4551 0.38366 1 169720 50422 2967 33504 33525 49406 49406 0.06564201909031908 VGVSTAIY 8 Unmodified _VGVSTAIY_ 0 0 0 ADGRE5|p.A671T|1|0.36|ENSG00000123146|chr19:14406520-14406520|G/A|missense_variant ADGRE5|p.A671T|1|0.36|ENSG00000123146|chr19:14406520-14406520|G/A|missense_variant ADGRE5|p.A671T|1|0.36|ENSG00000123146|chr19:14406520-14406520|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.3001403808594 2 405.223811 808.433069 NaN NaN NaN NaN NaN NaN NaN 29.617 1 27.501 27.001 28.001 -2.1167 0 0 0 0.21486 1 5327 5327 6.3541 0.59368 1 50423 77 33505 33526 49407 49407 0.021190220860830777 VGVSVSAT 8 Unmodified _VGVSVSAT_ 0 0 0 REV__ENSG00000239389|ENST00000289272|PCDHA13 REV__ENSG00000239389|ENST00000289272|PCDHA13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015075683594 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 83.756 1 83.756 83.256 84.256 0 0 0 0 0.21486 1 16330 16330 2.5775 0 1 + 50424 19774 33506 33527 49408 49408 0.015661625349594033 VGVSVSAT 8 Unmodified _VGVSVSAT_ 0 0 0 REV__ENSG00000239389|ENST00000289272|PCDHA13 REV__ENSG00000239389|ENST00000289272|PCDHA13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 86.459 1 86.459 85.959 86.959 0 0 0 0 0.21486 1 16873 16873 2.5775 0 1 + 50425 19774 33506 33527 49409 49409 0.015661625349594033 VGVSVSAT 8 Unmodified _VGVSVSAT_ 0 0 0 REV__ENSG00000239389|ENST00000289272|PCDHA13 REV__ENSG00000239389|ENST00000289272|PCDHA13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20184326171875 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 98.267 1 98.267 97.767 98.767 0 0 0 0 0.21486 1 19260 19260 2.5775 0 1 + 50426 19774 33506 33527 49410 49410 0.015661625349594033 VGVSVSAT 8 Unmodified _VGVSVSAT_ 0 0 0 REV__ENSG00000239389|ENST00000289272|PCDHA13 REV__ENSG00000239389|ENST00000289272|PCDHA13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.15252685546875 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 75.565 1 72.15 71.65 72.65 -3.4151 0 0 0 0.21486 1 14740 14740 2.5775 0 1 + 50427 19774 33506 33527 49411 49411 0.015661625349594033 VGVSVSAT 8 Unmodified _VGVSVSAT_ 0 0 0 REV__ENSG00000239389|ENST00000289272|PCDHA13 REV__ENSG00000239389|ENST00000289272|PCDHA13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2018127441406 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 55.881 1 52.691 52.191 53.191 -3.1895 0 0 0 0.21486 1 10342 10342 9.3474 0 1 + 50428 19774 33506 33527 49412 49412 0.015661625349594033 VGVSVSSG 8 Unmodified _VGVSVSSG_ 0 0 0 REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 346.19647216796875 2 346.184686 690.354819 NaN NaN NaN NaN NaN NaN NaN 59.761 1 59.761 59.261 60.261 0 0 0 0 0.21486 1 11452 11452 5.7604 0 1 + 50429 22177 33507 33528 49413 49413 -0.002744104991279528 VGVSVSSG 8 Unmodified _VGVSVSSG_ 0 0 0 REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.2214660644531 2 346.184686 690.354819 NaN NaN NaN NaN NaN NaN NaN 75.822 1 72.407 71.907 72.907 -3.4151 0 0 0 0.21486 1 14791 14791 5.7604 0 1 + 50430 22177 33507 33528 49414 49414 -0.002744104991279528 VGVSVSSG 8 Unmodified _VGVSVSSG_ 0 0 0 REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.19970703125 2 346.184686 690.354819 NaN NaN NaN NaN NaN NaN NaN 78.966 1 75.455 74.955 75.955 -3.5102 0 0 0 0.21486 1 15421 15421 5.7604 0 1 + 50431 22177 33507 33528 49415 49415 -0.002744104991279528 VGVSVSSG 8 Unmodified _VGVSVSSG_ 0 0 0 REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.1925048828125 2 346.184686 690.354819 NaN NaN NaN NaN NaN NaN NaN 84.49 1 80.826 80.326 81.326 -3.6641 0 0 0 0.21486 1 16515 16515 5.7604 0 1 + 50432 22177 33507 33528 49416 49416 -0.002744104991279528 VGVTAGGG 8 Unmodified _VGVTAGGG_ 0 0 0 REV__ENST00000555650.5_1_14:21485757-21486740:-|nuORF REV__ENST00000555650.5_1_14:21485757-21486740:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 309.1526184082031 2 309.166296 616.31804 NaN NaN NaN NaN NaN NaN NaN 42.288 1 39.637 39.137 40.137 -2.651 0 0 0 0.23711 1 7610 7610 0.62683 0 1 + 50433 22986 33508 33529 49417 49417 -0.0054666232504132495 VGVTPALE 8 Unmodified _VGVTPALE_ 0 0 0 REV__nc|ENSG00000168944|Q8N960-3|CEP120 REV__nc|ENSG00000168944|Q8N960-3|CEP120 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3966064453125 1 785.440346 784.433069 0.47123 0.00037013 -0.69244 -0.00054387 -0.22121 -0.00017375 785.4421213275946 123.16 0.099899 118.57 118.52 118.62 -4.5926 4 2 2 0 0 0 1.0249 1 23705 23705 5.7604 0 1 1016100 + 50434 13373 33509 33530 49418 49418 0.03223022086081073 VGVVFLCL 8 Unmodified _VGVVFLCL_ 0 0 0 REV__nc|ENSG00000102539|O43193-2|MLNR REV__nc|ENSG00000102539|O43193-2|MLNR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24664306640625 2 425.248775 848.482997 NaN NaN NaN NaN NaN NaN NaN 13.177 1 12.004 11.504 12.504 -1.173 0 0 0 0.21486 1 1685 1685 0.79363 0 1 + 50435 14842 33510 33531 49419 49419 0.05269433490377651 VGVVFSMMTV 10 Unmodified _VGVVFSMMTV_ 0 0 0 nc|ENSG00000135502|Q8NG04-2|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.56072998046875 3 357.185534 1068.53477 -2.2941 -0.00081941 -0.45927 -0.00016404 -2.7533 -0.00098345 357.1854821819014 15.349 0.20876 13.996 13.888 14.097 -1.3534 8 5 2 0 0 0 0.91149 1 2122 2122 1.9064 1.9064 1 168830 50436 12341 33511 33532 49420 49420 0.0032480912200298917 VGVVFSMMTV 10 Unmodified _VGVVFSMMTV_ 0 0 0 nc|ENSG00000135502|Q8NG04-2|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.185534 1068.53477 -0.86448 -0.00030878 -1.8129 -0.00064753 -2.6773 -0.00095631 357.1849745049279 15.295 0.24664 14.181 14.025 14.272 -1.1142 0.092753 -0.00059953 NaN 1.9064 14 6 3 NaN NaN NaN NaN 0 NaN NaN 0 757760 50437 12341 33511 33532 0.0032480912200298917 VGVVQTPRRPA 11 Unmodified _VGVVQTPRRPA_ 0 0 0 REV__ENST00000593873.5_3_19:58331259-58370135:+|nuORF REV__ENST00000593873.5_3_19:58331259-58370135:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2706909179688 2 590.351471 1178.68839 NaN NaN NaN NaN NaN NaN NaN 136.8 1 132.16 131.66 132.66 -4.6399 0 0 0 0.22632 1 26992 26992 0.00056442 0.00056442 1 + 50438 23363 33512 33533 49421 49421 0.10619303274188496 VGVVRNPL 8 Unmodified _VGVVRNPL_ 0 0 0 nc|ENSG00000187848|Q9UBL9-4|P2RX2 nc|ENSG00000187848|Q9UBL9-4|P2RX2 nc|ENSG00000187848|Q9UBL9-4|P2RX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 427.1353759765625 2 427.266345 852.518136 0.05544 2.3688E-05 -0.10927 -4.6687E-05 -0.05383 -2.3E-05 427.26623735462425 18.218 0.3449 18.218 18.023 18.368 0 12 9 2 0 0 0 0.83271 1 2940 2940 2.8892 0.31174 1 847530 50439 12528 33513 33534 49422 49422 0.08597812342566158 VGVVSLRFK 9 Unmodified _VGVVSLRFK_ 0 0 0 ENSG00000249751|ENST00000618155|ECSCR ENSG00000249751|ENST00000618155|ECSCR ENSG00000249751|ENST00000618155|ECSCR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.54681396484375 3 335.54656 1003.61785 NaN NaN NaN NaN NaN NaN NaN 12.655 1 12.655 12.155 13.155 0 0 0 0 0.23508 1 1777 1777 0.26902 0 1 50440 7900 33514 33535 49423 49423 0.11618629956524273 VGVVSVST 8 Unmodified _VGVVSVST_ 0 0 0 REV__ENST00000487002.1_1_1:155279546-155279798:+|nuORF REV__ENST00000487002.1_1_1:155279546-155279798:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2183532714844 2 374.215986 746.417419 -0.22402 -8.383E-05 0.19314 7.2278E-05 -0.030871 -1.1552E-05 374.21596661766455 32.236 0.72995 30.087 29.722 30.452 -2.1483 33 20 3 0 0 0 8448 1 5595 5595 0 0 1 1190000 + 50441 22248 33515 33536 49424 49424 0.03406735569058128 VGVVTEGT 8 Unmodified _VGVVTEGT_ 0 0 0 REV__ENST00000479663.2_1_1:160783430-160784592:+|nuORF REV__ENST00000479663.2_1_1:160783430-160784592:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2082824707031 2 381.205618 760.396684 NaN NaN NaN NaN NaN NaN NaN 30.689 1 28.796 28.296 29.296 -1.8928 0 0 0 0.2396 1 5270 5270 0.049793 0 1 + 50442 15681 33516 33537 49425 49425 0.006901451894009369 VGVYLFDRP 9 Unmodified _VGVYLFDRP_ 0 0 0 REV__ENSG00000198108|ENST00000305031|CHSY3 REV__ENSG00000198108|ENST00000305031|CHSY3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.287109375 2 533.290017 1064.56548 NaN NaN NaN NaN NaN NaN NaN 16.973 1 15.701 15.201 16.201 -1.2722 0 0 0 0.23508 1 2473 2473 7.9102 0.62092 1 + 50443 19391 33517 33538 49426 49426 0.03578046822894976 VGVYTAVTSRV 11 Unmodified _VGVYTAVTSRV_ 0 0 0 REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1 REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3240966796875 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 158.02 1 152.74 152.24 153.24 -5.2748 0 0 0 0.22632 1 30670 30670 0.094841 0.065559 1 + 50444 25167 33518 33539 49427 49427 0.06533086051763348 VGWAGNGG 8 Unmodified _VGWAGNGG_ 0 0 0 REV__ENST00000265753.12_1_7:73609634-73609802:+|nuORF REV__ENST00000265753.12_1_7:73609634-73609802:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 359.2062072753906 2 359.16937 716.324188 NaN NaN NaN NaN NaN NaN NaN 90.432 1 86.654 86.154 87.154 -3.7779 0 0 0 0.2396 1 17306 17306 0.049793 0.049793 1 + 50445 20246 33519 33540 49428 49428 -0.045321440935140345 VGWAGNGG 8 Unmodified _VGWAGNGG_ 0 0 0 REV__ENST00000265753.12_1_7:73609634-73609802:+|nuORF REV__ENST00000265753.12_1_7:73609634-73609802:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 359.1708068847656 2 359.16937 716.324188 NaN NaN NaN NaN NaN NaN NaN 96.581 1 92.661 92.161 93.161 -3.9194 0 0 0 0.21486 1 18531 18531 0.79363 0 1 + 50446 20246 33519 33540 49429 49429 -0.045321440935140345 VGWFPANY 8 Unmodified _VGWFPANY_ 0 0 0 nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1 nc|ENSG00000141968|P15498-2|VAV1 nc|ENSG00000141968|P15498-2|VAV1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0399169921875 3 318.488711 952.444303 -0.52715 -0.00016789 -0.23886 -7.6076E-05 -0.76602 -0.00024397 318.4885965778705 18.817 0.37919 18.817 18.616 18.996 0 17 10 2 0 0 0 1.0281 1 3023 3023 0.45834 0 1 1708000 50447 4402 33520 33541 49430 49430 -0.03382155819781474 VGWFPANY 8 Unmodified _VGWFPANY_ 0 0 0 nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1 nc|ENSG00000141968|P15498-2|VAV1 nc|ENSG00000141968|P15498-2|VAV1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 318.488711 952.444303 -0.011016 -3.5085E-06 -0.80092 -0.00025508 -0.81194 -0.00025859 318.4884314590359 20.259 0.4193 18.863 18.653 19.072 -1.3966 0.023087 -0.00031865 NaN 0.45834 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1570200 50448 4402 33520 33541 -0.03382155819781474 VGWFPANY 8 Unmodified _VGWFPANY_ 0 0 0 nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1 nc|ENSG00000141968|P15498-2|VAV1 nc|ENSG00000141968|P15498-2|VAV1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 318.488711 952.444303 -0.2627 -8.3667E-05 -0.34099 -0.0001086 -0.60369 -0.00019227 318.4885166542951 20.165 0.41993 18.839 18.629 19.049 -1.3251 -0.0001939 0.0001208 NaN 0.45834 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1146100 50449 4402 33520 33541 -0.03382155819781474 VGWHLLKVLS 10 Unmodified _VGWHLLKVLS_ 0 0 0 REV__ENST00000572680.1_1_17:7219444-7221143:-|nuORF REV__ENST00000572680.1_1_17:7219444-7221143:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.32958984375 2 576.350409 1150.68626 NaN NaN NaN NaN NaN NaN NaN 144.17 1 139.1 138.6 139.6 -5.0671 0 0 0 2.8426 1 27804 27804 0.013265 0 1 + 50450 23176 33521 33542 49431 49431 0.116948745363743 VGWLLLFV 8 Unmodified _VGWLLLFV_ 0 0 0 REV__ENSG00000121410|ENST00000263100|A1BG REV__ENSG00000121410|ENST00000263100|A1BG MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.235107421875 3 316.196868 945.568775 NaN NaN NaN NaN NaN NaN NaN 21.575 1 19.853 19.353 20.353 -1.7211 0 0 0 0.21486 1 3380 3380 0.45834 0 1 + 50451 15657 33522 33543 49432 49432 0.09381341667574361 VGWLPRLHLL 10 Unmodified _VGWLPRLHLL_ 0 0 0 REV__nc|ENSG00000010379|Q9NSD5-3|SLC6A13 REV__nc|ENSG00000010379|Q9NSD5-3|SLC6A13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.28759765625 2 602.371675 1202.7288 NaN NaN NaN NaN NaN NaN NaN 155.04 1 149.75 149.25 150.25 -5.2854 0 0 0 0.22588 1 30067 30067 4.3292 1.0479 1 + 50452 23928 33523 33544 49433 49433 0.1355426966460982 VGWMYTCF 8 Unmodified _VGWMYTCF_ 0 0 0 REV__HID1|p.R758C|1|0.25|ENSG00000167861|chr17:74951936-74951936|G/A|missense_variant REV__HID1|p.R758C|1|0.25|ENSG00000167861|chr17:74951936-74951936|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.1438903808594 3 336.143558 1005.40885 NaN NaN NaN NaN NaN NaN NaN 77.594 1 73.827 73.327 74.327 -3.7664 0 0 0 0.21486 1 14701 14701 1.8442 0.6509 1 + 50453 23633 33524 33545 49434 49434 -0.09364277663451048 VGWPAGTW 8 Unmodified _VGWPAGTW_ 0 0 0 ENST00000270357.9_2_2:241517616-241518690:+|nuORF ENST00000270357.9_2_2:241517616-241518690:+|nuORF ENST00000270357.9_2_2:241517616-241518690:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21673583984375 2 437.216321 872.418088 NaN NaN NaN NaN NaN NaN NaN 89.457 1 85.679 85.179 86.179 -3.7779 0 0 0 0.21486 1 17128 17128 6.3541 0.59368 1 50454 8401 33525 33546 49435 49435 -0.02322424991234584 VGWPGSPR 8 Unmodified _VGWPGSPR_ 0 0 0 REV__ENST00000249014.4_2_22:37964988-37965255:+|nuORF REV__ENST00000249014.4_2_22:37964988-37965255:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 428.2272644042969 2 428.22722 854.439886 NaN NaN NaN NaN NaN NaN NaN 97.355 1 93.257 92.757 93.757 -4.0978 0 0 0 0.21486 1 19101 19101 9.3474 0 1 + 50455 20106 33526 33547 49436 49436 0.0068437975733104395 VGWQPLIC 8 Unmodified _VGWQPLIC_ 0 0 0 ENST00000592292.5_1_19:9529933-9546175:-|nuORF;ENST00000588221.5_1_19:9529933-9545487:-|nuORF;ENST00000588933.5_1_19:9529933-9544772:-|nuORF ENST00000592292.5_1_19:9529933-9546175:-|nuORF ENST00000592292.5_1_19:9529933-9546175:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2330627441406 2 458.241481 914.468409 NaN NaN NaN NaN NaN NaN NaN 33.207 1 31.061 30.561 31.561 -2.1468 0 0 0 0.23711 1 5787 5787 0.12286 0 1 50456 11634 33527 33548 49437 49437 0.007753613422551098 VGWRGVRV 8 Unmodified _VGWRGVRV_ 0 0 0 REV__ENST00000531065.5_1_16:2014195-2014626:-|nuORF REV__ENST00000531065.5_1_16:2014195-2014626:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1651306152344 3 310.187366 927.540269 NaN NaN NaN NaN NaN NaN NaN 12.937 1 11.928 11.428 12.428 -1.0098 0 0 0 0.21486 1 1839 1839 0.45834 0 1 + 50457 22764 33528 33549 49438 49438 0.07360036810985093 VGWRSGLEKDL 11 Unmodified _VGWRSGLEKDL_ 0 0 0 ENST00000437201.5_1_7:72300234-72301326:+|nuORF ENST00000437201.5_1_7:72300234-72301326:+|nuORF ENST00000437201.5_1_7:72300234-72301326:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7708129882812 2 630.340769 1258.66699 0.96717 0.00060965 4.1429 0.0026114 5.11 0.0032211 630.8441949924785 80.883 0.38026 77.326 77.095 77.475 -3.557 13 10 2 0 0 0 0.66106 1 15774 15774 0.00056442 0 1 1165200 50458 9847 33529 33550 49439 49439 0.04799873454817316 VGWRWNYE 8 Unmodified _VGWRWNYE_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 370.0751647949219 3 370.510286 1108.50903 0.036163 1.3399E-05 -1.1812 -0.00043765 -1.145 -0.00042425 370.5097933804908 131.2 0.68732 126.37 126.1 126.79 -4.8355 31 19 2 0 0 0 1.0281 1 25273 25273 0 0 1 3744500 + 50459 17527 33530 33551 49440 49440 -0.04088581013775183 VGWRWNYE 8 Unmodified _VGWRWNYE_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 370.510286 1108.50903 -0.19005 -7.0416E-05 -1.1018 -0.00040822 -1.2918 -0.00047863 370.50983229360673 126.35 0.57064 126.35 126.07 126.64 0 -0.065582 -0.00011173 NaN 0 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2346800 + 50460 17527 33530 33551 -0.04088581013775183 VGWRWNYE 8 Unmodified _VGWRWNYE_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 370.510286 1108.50903 -0.25875 -9.5868E-05 -0.94275 -0.0003493 -1.2015 -0.00044517 370.50989560390644 131.08 0.67154 126.44 125.93 126.61 -4.6359 0.023435 6.5034E-05 NaN 0 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1994400 + 50461 17527 33530 33551 -0.04088581013775183 VGWRWNYE 8 Unmodified _VGWRWNYE_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 370.510286 1108.50903 -0.50472 -0.000187 -0.75325 -0.00027909 -1.258 -0.00046609 370.50997567681713 131.29 0.66917 126.51 126.04 126.71 -4.7725 0.095209 0.00027567 NaN 0 36 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2500000 + 50462 17527 33530 33551 -0.04088581013775183 VGWTPRWR 8 Unmodified _VGWTPRWR_ 0 0 0 REV__ENST00000595684.5_1_19:17660373-17660589:+|nuORF REV__ENST00000595684.5_1_19:17660373-17660589:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 353.2525634765625 3 353.194521 1056.56173 NaN NaN NaN NaN NaN NaN NaN 4.4793 1 3.4393 2.9393 3.9393 -1.04 0 0 0 0.21486 1 101 101 0.45834 0 1 + 50463 23377 33531 33552 49441 49441 0.03571421839683353 VGWTVKYY 8 Unmodified _VGWTVKYY_ 0 0 0 APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 339.1557312011719 3 339.179766 1014.51747 NaN NaN NaN NaN NaN NaN NaN 74.24 1 70.563 70.063 71.063 -3.6764 0 0 0 0.21486 1 14037 14037 1.8442 0 1 50464 185 33532 33553 49442 49442 0.010789729028488182 VGWTVLVH 8 Unmodified _VGWTVLVH_ 0 0 0 nc|ENSG00000130005|Q14353-2|GAMT nc|ENSG00000130005|Q14353-2|GAMT nc|ENSG00000130005|Q14353-2|GAMT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.0401306152344 3 304.176356 909.507237 -0.79056 -0.00024047 0.092993 2.8286E-05 -0.69757 -0.00021218 304.1762586237099 45.667 0.80398 42.801 42.327 43.131 -2.8666 29 22 2 0 0 0 1.0281 1 8341 8341 0.45834 0 1 1640500 50465 12316 33533 33554 49443 49443 0.04886409968287353 VGWTVLVH 8 Unmodified _VGWTVLVH_ 0 0 0 nc|ENSG00000130005|Q14353-2|GAMT nc|ENSG00000130005|Q14353-2|GAMT nc|ENSG00000130005|Q14353-2|GAMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 304.176356 909.507237 -0.25313 -7.6997E-05 0.13271 4.0367E-05 -0.12042 -3.663E-05 304.176358122409 42.819 0.45556 42.819 42.531 42.987 0 0.0010724 0.00037028 NaN 0.45834 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2264300 50466 12316 33533 33554 0.04886409968287353 VGWTVLVH 8 Unmodified _VGWTVLVH_ 0 0 0 nc|ENSG00000130005|Q14353-2|GAMT nc|ENSG00000130005|Q14353-2|GAMT nc|ENSG00000130005|Q14353-2|GAMT MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 304.176356 909.507237 -0.28801 -8.7604E-05 -0.63084 -0.00019189 -0.91884 -0.00027949 304.1760848328492 45.657 0.66331 42.816 42.439 43.102 -2.8409 -0.0018163 -0.00032648 NaN 0.45834 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1626700 50467 12316 33533 33554 0.04886409968287353 VGWTVLVH 8 Unmodified _VGWTVLVH_ 0 0 0 nc|ENSG00000130005|Q14353-2|GAMT nc|ENSG00000130005|Q14353-2|GAMT nc|ENSG00000130005|Q14353-2|GAMT MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 304.176356 909.507237 -0.013907 -4.2302E-06 -1.2008 -0.00036527 -1.2148 -0.0003695 304.1758971618835 45.701 1.0001 42.836 42.484 43.484 -2.8653 0.01803 -0.00084663 NaN 0.45834 36 28 2 NaN NaN NaN NaN 0 NaN NaN 0 1639900 50468 12316 33533 33554 0.04886409968287353 VGWTVRRGVQS 11 Unmodified _VGWTVRRGVQS_ 0 0 0 ENST00000526240.5_1_11:6416766-6417497:-|nuORF;nc|ENSG00000166313|O00213-4|APBB1;nc|ENSG00000166313|O00213-6|APBB1;nc|ENSG00000166313|O00213-3|APBB1;nc|ENSG00000166313|O00213-5|APBB1;nc|ENSG00000166313|O00213-2|APBB1;ENSG00000166313|ENST00000609360|APBB1 ENST00000526240.5_1_11:6416766-6417497:-|nuORF ENST00000526240.5_1_11:6416766-6417497:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7550048828125 2 622.846553 1243.67855 NaN NaN NaN NaN NaN NaN NaN 169.47 1 164.54 164.04 165.04 -4.9295 0 0 0 0.21513 1 33466 33466 15.248 0.8431 1 50469 5713 33534 33555 49444 49444 0.06646115268813446 VGWVCSFH 8 Unmodified _VGWVCSFH_ 0 0 0 REV__ENST00000283233.9_2_2:159312955-159313081:-|nuORF REV__ENST00000283233.9_2_2:159312955-159313081:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.146240234375 3 312.146179 933.416708 NaN NaN NaN NaN NaN NaN NaN 38.176 1 35.771 35.271 36.271 -2.4049 0 0 0 0.21486 1 6782 6782 1.8442 0 1 + 50470 20320 33535 33556 49445 49445 -0.05266382351658194 VGWWCGAIAA 10 Unmodified _VGWWCGAIAA_ 0 0 0 REV__ENSG00000144843|ENST00000357003|ADPRH REV__ENSG00000144843|ENST00000357003|ADPRH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.0838317871094 3 345.168984 1032.48512 NaN NaN NaN NaN NaN NaN NaN 116.9 1 112.32 111.82 112.82 -4.5815 0 0 0 0.22588 1 22430 22430 2.086 1.0145 1 + 50471 16808 33536 33557 49446 49446 -0.029821377718235453 VGWWLADAY 9 Unmodified _VGWWLADAY_ 0 0 0 REV__ENSG00000053918|ENST00000155840|KCNQ1 REV__ENSG00000053918|ENST00000155840|KCNQ1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2622680664062 2 540.761092 1079.50763 0.15956 8.6281E-05 0.79453 0.00042965 0.95409 0.00051593 541.2626085390629 76.543 0.30585 72.82 72.756 73.062 -3.7227 11 8 2 0 0 0 0.50294 1 14503 14503 19.439 0.18201 1 622170 + 50472 14100 33537 33558 49447 49447 -0.028942151025376006 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.571 1 69.571 69.071 70.071 0 0 0 0 0.2325 1 13470 13470 0.62683 0.50396 1 50473 9558 33538 33559 49448 49448 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1643371582031 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 69.818 1 69.818 69.318 70.318 0 0 0 0 0.22757 1 13516 13516 0.62683 0 1 50474 9558 33538 33559 49449 49449 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 62.138 1 59.177 58.677 59.677 -2.9614 0 0 0 0.22757 1 11986 11986 0.62683 0 1 50475 9558 33538 33559 49450 49450 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 62.89 1 59.929 59.429 60.429 -2.9614 0 0 0 0.21486 1 12139 12139 6.7232 2.7788 1 50476 9558 33538 33559 49451 49451 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 63.142 1 60.145 59.645 60.645 -2.9975 0 0 0 0.22757 1 12193 12193 0.62683 0.50396 1 50477 9558 33538 33559 49452 49452 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.432 1 72.017 71.517 72.517 -3.4151 0 0 0 0.22757 1 14711 14711 0.62683 0 1 50478 9558 33538 33559 49453 49453 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16461181640625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 47.109 1 44.167 43.667 44.667 -2.9421 0 0 0 0.22757 1 8579 8579 0.62683 0 1 50479 9558 33538 33559 49454 49454 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1645812988281 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 63.171 1 59.756 59.256 60.256 -3.4158 0 0 0 0.2325 1 11797 11797 0.62683 0.50396 1 50480 9558 33538 33559 49455 49455 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 63.459 1 60.043 59.543 60.543 -3.4158 0 0 0 0.2325 1 11854 11854 0.62683 0.50396 1 50481 9558 33538 33559 49456 49456 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 73.651 1 69.974 69.474 70.474 -3.6764 0 0 0 0.21486 1 13920 13920 6.7232 0.99131 1 50482 9558 33538 33559 49457 49457 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16546630859375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.665 1 71.942 71.442 72.442 -3.7227 0 0 0 0.21323 1 14315 14315 15.847 5.0233 1 50483 9558 33538 33559 49458 49458 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 84.086 1 80.176 79.676 80.676 -3.9093 0 0 0 0.2325 1 15981 15981 0.62683 0 1 50484 9558 33538 33559 49459 49459 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646728515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 95.23 1 91.039 90.539 91.539 -4.1911 0 0 0 0.21486 1 18171 18171 1.6526 0 1 50485 9558 33538 33559 49460 49460 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 99.42 1 95.151 94.651 95.651 -4.2692 0 0 0 0.2325 1 19004 19004 0.62683 0.50396 1 50486 9558 33538 33559 49461 49461 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 99.43 1 95.161 94.661 95.661 -4.2692 0 0 0 0.21486 1 19005 19005 6.7232 2.7788 1 50487 9558 33538 33559 49462 49462 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 99.644 1 95.361 94.861 95.861 -4.2827 0 0 0 0.21486 1 19049 19049 6.7232 2.7788 1 50488 9558 33538 33559 49463 49463 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 100.43 1 96.131 95.631 96.631 -4.297 0 0 0 0.21486 1 19208 19208 6.7232 2.7788 1 50489 9558 33538 33559 49464 49464 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 62.071 1 58.831 58.331 59.331 -3.2395 0 0 0 0.21486 1 11630 11630 6.7232 0.99131 1 50490 9558 33538 33559 49465 49465 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16461181640625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 62.338 1 59.099 58.599 59.599 -3.2395 0 0 0 0.2325 1 11686 11686 0.62683 0.50396 1 50491 9558 33538 33559 49466 49466 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 63.339 1 60.082 59.582 60.582 -3.2567 0 0 0 0.2325 1 11884 11884 0.62683 0.50396 1 50492 9558 33538 33559 49467 49467 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2308044433594 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 73.493 1 69.899 69.399 70.399 -3.594 0 0 0 0.21486 1 13952 13952 3.9444 0 1 50493 9558 33538 33559 49468 49468 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16473388671875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 73.546 1 69.952 69.452 70.452 -3.594 0 0 0 0.2325 1 13961 13961 0.62683 0.50396 1 50494 9558 33538 33559 49469 49469 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.76 1 72.126 71.626 72.626 -3.6337 0 0 0 0.22757 1 14407 14407 0.62683 0 1 50495 9558 33538 33559 49470 49470 0.00354693631857117 VGYAEVYK 8 Unmodified _VGYAEVYK_ 0 0 0 ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF ENST00000409086.7_1_2:196601764-196601926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16455078125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.984 1 72.35 71.85 72.85 -3.6337 0 0 0 0.2325 1 14454 14454 0.62683 0.50396 1 50496 9558 33538 33559 49471 49471 0.00354693631857117 VGYAVGLG 8 Unmodified _VGYAVGLG_ 0 0 0 SLC6A5|p.G226Efs*9|1|0.22|ENSG00000165970|chr11:20604418-20604418|G/-|frameshift_variant;nc|ENSG00000165970|Q9Y345-3|SLC6A5;ENSG00000165970|ENST00000525748|SLC6A5;ENST00000489764.1_1_1:44476359-44489988:-|nuORF;SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant;ENSG00000196517|ENST00000372310|SLC6A9;nc|ENSG00000196517|P48067-3|SLC6A9;nc|ENSG00000196517|P48067|SLC6A9 SLC6A5|p.G226Efs*9|1|0.22|ENSG00000165970|chr11:20604418-20604418|G/-|frameshift_variant;SLC6A9|p.N490Efs*2|1|0.07|ENSG00000196517|chr1:44001250-44001251|-/C|frameshift_variant SLC6A5|p.G226Efs*9|1|0.22|ENSG00000165970|chr11:20604418-20604418|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 368.20697021484375 2 368.205421 734.39629 NaN NaN NaN NaN NaN NaN NaN 76.701 1 76.701 76.201 77.201 0 0 0 0 0.23711 1 14906 14906 0.0082765 0 1 50497 5681;7277 33539 33560 49472 49472 0.01846770260192443 VGYDIKQS 8 Unmodified _VGYDIKQS_ 0 0 0 REV__ENSG00000127083|ENST00000375550|OMD REV__ENSG00000127083|ENST00000375550|OMD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.05010986328125 3 303.827392 908.460347 -0.42823 -0.00013011 0.32279 9.8073E-05 -0.10544 -3.2034E-05 303.8274316581226 27.051 0.41076 27.051 26.907 27.318 0 17 11 2 0 0 0 1.0276 1 4742 4742 0.45834 0 1 664550 + 50498 15877 33540 33561 49473 49473 0.0024550562648073537 VGYDIKQS 8 Unmodified _VGYDIKQS_ 0 0 0 REV__ENSG00000127083|ENST00000375550|OMD REV__ENSG00000127083|ENST00000375550|OMD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 303.827392 908.460347 0.43506 0.00013218 -0.46635 -0.00014169 -0.031286 -9.5054E-06 303.827183989655 28.932 0.37853 26.976 26.741 27.12 -1.9561 0.0058796 -0.00030887 NaN 0.45834 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 397960 + 50499 15877 33540 33561 0.0024550562648073537 VGYDIKQS 8 Unmodified _VGYDIKQS_ 0 0 0 REV__ENSG00000127083|ENST00000375550|OMD REV__ENSG00000127083|ENST00000375550|OMD MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 303.827392 908.460347 0.29852 9.07E-05 -0.56584 -0.00017192 -0.26732 -8.1219E-05 303.8271909032955 28.746 0.45308 26.991 26.736 27.189 -1.7552 0.020652 -0.00039956 NaN 0.45834 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 945700 + 50500 15877 33540 33561 0.0024550562648073537 VGYDRRHY 8 Unmodified _VGYDRRHY_ 0 0 0 REV__ZNF317|p.E359Rfs*51|1|0.42|ENSG00000130803|chr19:9160716-9160716|G/-|frameshift_variant REV__ZNF317|p.E359Rfs*51|1|0.42|ENSG00000130803|chr19:9160716-9160716|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.261962890625 2 533.264865 1064.51518 NaN NaN NaN NaN NaN NaN NaN 145.25 1 140.19 139.69 140.69 -5.0671 0 0 0 0.21486 1 28060 28060 5.7604 0.028577 1 + 50501 16033 33541 33562 49474 49474 -0.014500627822371825 VGYEHYAE 8 Unmodified _VGYEHYAE_ 0 0 0 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.8768615722656 3 323.14338 966.408311 -0.49295 -0.0001593 -0.26549 -8.5791E-05 -0.75844 -0.00024509 323.1437481368087 20.232 0.28449 20.232 20.066 20.351 0 11 7 2 0 0 0 1.0281 1 3357 3357 0.45834 0 1 415570 50502 6544 33542 33563 49475 49475 -0.07623657787280536 VGYFKVIH 8 Unmodified _VGYFKVIH_ 0 0 0 REV__nc|ENSG00000140538|Q16288-5|NTRK3 REV__nc|ENSG00000140538|Q16288-5|NTRK3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77667236328125 2 481.776545 961.538538 NaN NaN NaN NaN NaN NaN NaN 16.314 1 15.092 14.592 15.592 -1.2219 0 0 0 0.21486 1 2339 2339 2.8892 0.58649 1 + 50503 16585 33543 33564 49476 49476 0.056229830023767136 VGYFWSIS 8 Unmodified _VGYFWSIS_ 0 0 0 REV__SLC6A1|p.K531Qfs*55|1|0.2|ENSG00000157103|chr3:11034589-11034590|-/C|frameshift_variant REV__SLC6A1|p.K531Qfs*55|1|0.2|ENSG00000157103|chr3:11034589-11034590|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.1588134765625 3 320.160483 957.459619 NaN NaN NaN NaN NaN NaN NaN 44.504 1 41.757 41.257 42.257 -2.7475 0 0 0 0.21486 1 8056 8056 1.8442 0 1 + 50504 17281 33544 33565 49477 49477 -0.020812890225670344 VGYGAAGL 8 Unmodified _VGYGAAGL_ 0 0 0 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant;TAP2|p.V467Lfs*2|1|0.15|ENSG00000204267|chr6:32830680-32830680|C/-|frameshift_variant;TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant;nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant TAP2|p.Q330Rfs*50|1|0.33|ENSG00000204267|chr6:32832783-32832783|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 354.2485046386719 2 354.189771 706.36499 NaN NaN NaN NaN NaN NaN NaN 106.88 1 102.75 102.25 103.25 -4.135 0 0 0 0.21486 1 20552 20552 0.79363 0 1 50505 7569 33545 33566 49478 49478 6.197226105086884E-05 VGYGIYYFI 9 Unmodified _VGYGIYYFI_ 0 0 0 ENST00000576846.1_1_17:7530144-7530450:-|nuORF;ENST00000575826.5_1_17:7530037-7530880:-|nuORF;ENST00000571074.5_1_17:7529767-7530880:-|nuORF;ENSG00000141504|ENST00000269298|SAT2 ENST00000576846.1_1_17:7530144-7530450:-|nuORF ENST00000576846.1_1_17:7530144-7530450:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.775390625 2 547.781493 1093.54843 NaN NaN NaN NaN NaN NaN NaN 133.89 1 129.08 128.58 129.58 -4.8175 0 0 0 0.1966 1 25773 25773 0.40827 0.40231 1 50506 11463 33546 33567 49479 49479 0.005401262170835253 VGYGLAIG 8 Unmodified _VGYGLAIG_ 0 0 0 REV__UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant REV__UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2128601074219 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 170.54 1 165.63 165.13 166.13 -4.9149 0 0 0 0.21486 1 33725 33725 2.8892 0 1 + 50507 15188 33547 33568 49480 49480 0.02767056777236121 VGYGNRPPRRP 11 Unmodified _VGYGNRPPRRP_ 0 0 0 REV__MORN1|p.E226Gfs*45|1|0.04|ENSG00000116151|chr1:2372548-2372549|TT/-|frameshift_variant REV__MORN1|p.E226Gfs*45|1|0.04|ENSG00000116151|chr1:2372548-2372549|TT/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.0470275878906 4 317.929723 1267.68979 -0.42259 -0.00013435 0.32619 0.0001037 -0.096403 -3.0649E-05 317.93012799097545 36.883 1.4725 36.883 36.455 37.927 0 99 41 4 0 0 0 0.81642 1 6944 6944 1.4551 0.12547 1 9214000 + 50508 15471 33548 33569 49481 49481 0.06664937362938872 VGYGVPAV 8 Unmodified _VGYGVPAV_ 0 0 0 nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;ADGRE2|p.I749Rfs*49|1|0.1|ENSG00000127507|chr19:14743716-14743722|TGCAAGA/-|frameshift_variant;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2;ENST00000360222.8_1_19:14854584-14867061:-|nuORF;nc|ENSG00000131355|Q9BY15-2|ADGRE3;ENSG00000131355|ENST00000253673|ADGRE3;nc|ENSG00000127507|Q9UHX3-6|ADGRE2 nc|ENSG00000127507|Q9UHX3-5|ADGRE2 nc|ENSG00000127507|Q9UHX3-5|ADGRE2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2130432128906 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 51.662 1 48.617 48.117 49.117 -3.0453 0 0 0 0.23711 1 9492 9492 0.0082765 0 1 50509 76 33549 33570 49482 49482 0.02215056777231439 VGYHKLHL 8 Unmodified _VGYHKLHL_ 0 0 0 REV__nc|ENSG00000159082|O43426-5|SYNJ1 REV__nc|ENSG00000159082|O43426-5|SYNJ1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.85595703125 3 322.855505 965.544686 NaN NaN NaN NaN NaN NaN NaN 25.337 1 25.337 24.837 25.837 0 0 0 0 0.21486 1 4391 4391 0.45834 0 1 + 50510 17356 33550 33571 49483 49483 0.06053501233895986 VGYHYGSA 8 Unmodified _VGYHYGSA_ 0 0 0 REV__ENSG00000119715|ENST00000644823|ESRRB;REV__PPARA|p.I195Rfs*4|1|0.26|ENSG00000186951|chr22:46219886-46219887|AT/-|frameshift_variant REV__ENSG00000119715|ENST00000644823|ESRRB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.1969909667969 2 427.195585 852.376617 NaN NaN NaN NaN NaN NaN NaN 69.738 1 66.559 66.059 67.059 -3.1796 0 0 0 0.21486 1 13562 13562 2.5775 0 1 + 50511 15594;19066 33551 33572 49484 49484 -0.05547605750564344 VGYIGGVV 8 Unmodified _VGYIGGVV_ 0 0 0 REV__ENSG00000167658|ENST00000309311|EEF2 REV__ENSG00000167658|ENST00000309311|EEF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 382.22235107421875 2 382.221072 762.42759 NaN NaN NaN NaN NaN NaN NaN 115.01 1 115.01 114.51 115.51 0 0 0 0 0.21486 1 22628 22628 0.79363 0 1 + 50512 17953 33552 33573 49485 49485 0.03687343294291168 VGYILLKKL 9 Unmodified _VGYILLKKL_ 0 0 0 RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant;ENSG00000204764|ENST00000523189|RANBP17;ENST00000520864.5_1_5:170395310-170632776:+|nuORF;ENST00000519256.5_1_5:170585477-170669877:+|nuORF;ENST00000389118.8_1_5:170395310-170711609:+|nuORF;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.676025390625 2 523.852253 1045.68995 NaN NaN NaN NaN NaN NaN NaN 13.13 1 12 11.5 12.5 -1.1301 0 0 0 0.23508 1 1675 1675 0.6015 0.6015 1 50513 7609 33553 33574 49486 49486 0.16893544310232755 VGYILLKKL 9 Unmodified _VGYILLKKL_ 0 0 0 RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant;ENSG00000204764|ENST00000523189|RANBP17;ENST00000520864.5_1_5:170395310-170632776:+|nuORF;ENST00000519256.5_1_5:170585477-170669877:+|nuORF;ENST00000389118.8_1_5:170395310-170711609:+|nuORF;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6947631835938 2 523.852253 1045.68995 NaN NaN NaN NaN NaN NaN NaN 150.91 1 145.74 145.24 146.24 -5.1759 0 0 0 0.19624 1 29252 29252 0 0 1 50514 7609 33553 33574 49487 49487 0.16893544310232755 VGYIPGGV 8 Unmodified _VGYIPGGV_ 0 0 0 ENST00000586435.1_1_17:33316537-33318256:+|nuORF ENST00000586435.1_1_17:33316537-33318256:+|nuORF ENST00000586435.1_1_17:33316537-33318256:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21331787109375 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 17.536 1 17.536 17.036 18.036 0 0 0 0 0.2396 1 2783 2783 0 0 1 50515 11550 33554 33575 49488 49488 0.022150567772541763 VGYIPGGV 8 Unmodified _VGYIPGGV_ 0 0 0 ENST00000586435.1_1_17:33316537-33318256:+|nuORF ENST00000586435.1_1_17:33316537-33318256:+|nuORF ENST00000586435.1_1_17:33316537-33318256:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2140197753906 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 31.351 1 29.12 28.62 29.62 -2.2305 0 0 0 0.2396 1 5688 5688 0 0 1 50516 11550 33554 33575 49489 49489 0.022150567772541763 VGYKAAKAAA 10 Unmodified _VGYKAAKAAA_ 0 0 0 REV__nc|ENSG00000049540|P15502-11|ELN REV__nc|ENSG00000049540|P15502-11|ELN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.0323791503906 3 317.187032 948.539266 NaN NaN NaN NaN NaN NaN NaN 66.939 1 66.939 66.439 67.439 0 0 0 0 0.22588 1 12935 12935 0.77653 0 1 + 50517 14079 33555 33576 49490 49490 0.06293777651410437 VGYKSCIHH 9 Unmodified _VGYKSCIHH_ 0 0 0 REV__ENST00000510955.5_1_4:178359977-178363529:-|nuORF REV__ENST00000510955.5_1_4:178359977-178363529:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2586059570312 2 522.258194 1042.50183 NaN NaN NaN NaN NaN NaN NaN 22.567 1 21.113 20.613 21.613 -1.4535 0 0 0 0.23508 1 3603 3603 6.7232 1.4925 1 + 50518 22542 33556 33577 49491 49491 -0.017716368858373244 VGYLLKSR 8 Unmodified _VGYLLKSR_ 0 0 0 nc|ENSG00000151687|Q7Z5J8-3|ANKAR nc|ENSG00000151687|Q7Z5J8-3|ANKAR nc|ENSG00000151687|Q7Z5J8-3|ANKAR MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.32586669921875 3 312.527277 934.560001 -0.53706 -0.00016785 0.88729 0.0002773 0.35023 0.00010946 312.527500066754 18.44 0.45703 18.44 18.195 18.652 0 23 12 3 0 0 0 0.88811 1 2929 2929 0.45834 0 1 2061000 50519 12386 33557 33578 49492 49492 0.09010368031090366 VGYLLKSR 8 Unmodified _VGYLLKSR_ 0 0 0 nc|ENSG00000151687|Q7Z5J8-3|ANKAR nc|ENSG00000151687|Q7Z5J8-3|ANKAR nc|ENSG00000151687|Q7Z5J8-3|ANKAR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 312.527277 934.560001 -0.064052 -2.0018E-05 0.52213 0.00016318 0.45807 0.00014316 312.52732781014583 19.961 0.38111 18.565 18.379 18.76 -1.3966 0.059087 -0.0001461 NaN 0.45834 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1041400 50520 12386 33557 33578 0.09010368031090366 VGYLLKSR 8 Unmodified _VGYLLKSR_ 0 0 0 nc|ENSG00000151687|Q7Z5J8-3|ANKAR nc|ENSG00000151687|Q7Z5J8-3|ANKAR nc|ENSG00000151687|Q7Z5J8-3|ANKAR MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 312.527277 934.560001 -0.28352 -8.8609E-05 0.58292 0.00018218 0.2994 9.3571E-05 312.5273621511636 19.837 0.45188 18.512 18.279 18.731 -1.3251 0.0065273 -8.9098E-05 NaN 0.45834 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1613700 50521 12386 33557 33578 0.09010368031090366 VGYLWGEE 8 Unmodified _VGYLWGEE_ 0 0 0 REV__KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant REV__KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.1789855957031 3 318.151876 951.433798 NaN NaN NaN NaN NaN NaN NaN 21.534 1 20.06 19.56 20.56 -1.4742 0 0 0 0.21486 1 3646 3646 1.8442 0.36234 1 + 50522 15633 33558 33579 49493 49493 -0.043861832648417476 VGYMMVHM 8 Unmodified _VGYMMVHM_ 0 0 0 REV__ENSG00000171155|ENST00000304661|C1GALT1C1 REV__ENSG00000171155|ENST00000304661|C1GALT1C1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.14410400390625 3 323.144793 966.41255 NaN NaN NaN NaN NaN NaN NaN 36.518 1 34.17 33.67 34.67 -2.3479 0 0 0 0.21486 1 6459 6459 0.45834 0 1 + 50523 18206 33559 33580 49494 49494 -0.07199931161210316 VGYNDVFARY 10 Unmodified _VGYNDVFARY_ 0 0 0 REV__ENSG00000186716|ENST00000305877|BCR REV__ENSG00000186716|ENST00000305877|BCR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.292236328125 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 178.73 1 173.94 173.44 174.44 -4.7898 0 0 0 0.22588 1 36567 36567 1.4819 0.28856 1 + 50524 19049 33560 33581 49495 49495 -0.021160600163966592 VGYNFEVSI 9 Unmodified _VGYNFEVSI_ 0 0 0 REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1 REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.19512939453125 3 343.17468 1026.50221 NaN NaN NaN NaN NaN NaN NaN 105.9 1 101.64 101.14 102.14 -4.2638 0 0 0 0.23508 1 20846 20846 1.0715 0 1 + 50525 24864 33561 33582 49496 49496 -0.009979386849863658 VGYNILILLIL 11 Unmodified _VGYNILILLIL_ 0 0 0 REV__LATS1|p.F1039Lfs*19|1|0.19|ENSG00000131023|chr6:149662005-149662005|A/-|frameshift_variant REV__LATS1|p.F1039Lfs*19|1|0.19|ENSG00000131023|chr6:149662005-149662005|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7704467773438 2 622.40485 1242.79515 NaN NaN NaN NaN NaN NaN NaN 119.87 1 115.4 114.9 115.9 -4.467 0 0 0 0.22632 1 23077 23077 0 0 1 + 50526 23789 33562 33583 49497 49497 0.18346040716005518 VGYNTTVL 8 Unmodified _VGYNTTVL_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 433.88818359375 2 433.734543 865.454533 NaN NaN NaN NaN NaN NaN NaN 133.39 1 133.39 132.89 133.89 0 0 0 0 0.21486 1 26390 26390 2.5775 0 1 + 50527 18292 33563 33584 49498 49498 0.0164240711480943 VGYPATPRK 9 Unmodified _VGYPATPRK_ 0 0 0 nc|ENSG00000165588|P32243|OTX2;ENSG00000115507|ENST00000282549|OTX1 nc|ENSG00000165588|P32243|OTX2 nc|ENSG00000165588|P32243|OTX2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.18133544921875 3 330.190665 987.550165 NaN NaN NaN NaN NaN NaN NaN 77.59 1 77.59 77.09 78.09 0 0 0 0 0.23508 1 15088 15088 1.1933 0.735 1 50528 2860 33564 33585 49499 49499 0.05589180025708629 VGYPHPDW 8 Unmodified _VGYPHPDW_ 0 0 0 ENST00000565325.5_1_15:73854253-73925580:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN ENST00000565325.5_1_15:73854253-73925580:-|nuORF ENST00000565325.5_1_15:73854253-73925580:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1856384277344 3 324.152099 969.434466 0.11924 3.8653E-05 0.58686 0.00019023 0.7061 0.00022888 324.1522122734317 36.607 0.34085 34.26 34.106 34.447 -2.3479 13 9 2 0 0 0 0.88811 1 6455 6455 0.45834 0 1 658960 50529 5095 33565 33586 49500 49500 -0.05147343825149164 VGYPHPDW 8 Unmodified _VGYPHPDW_ 0 0 0 ENST00000565325.5_1_15:73854253-73925580:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN ENST00000565325.5_1_15:73854253-73925580:-|nuORF ENST00000565325.5_1_15:73854253-73925580:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 324.152099 969.434466 -0.46919 -0.00015209 0.83754 0.00027149 0.36834 0.0001194 324.15234869417355 34.314 0.37334 34.314 34.178 34.552 0 0.027379 0.00011307 NaN 0.45834 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1040700 50530 5095 33565 33586 -0.05147343825149164 VGYPRRGY 8 Unmodified _VGYPRRGY_ 0 0 0 REV__ENSG00000129084|ENST00000396394|PSMA1 REV__ENSG00000129084|ENST00000396394|PSMA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1844177246094 3 323.175126 966.503549 NaN NaN NaN NaN NaN NaN NaN 74.888 1 71.211 70.711 71.711 -3.6764 0 0 0 0.21486 1 14159 14159 0.45834 0 1 + 50531 15947 33566 33587 49501 49501 0.018957401944248886 VGYPRRGYR 9 Unmodified _VGYPRRGYR_ 0 0 0 REV__ENSG00000129084|ENST00000396394|PSMA1 REV__ENSG00000129084|ENST00000396394|PSMA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 562.0820922851562 2 562.309606 1122.60466 0.134 7.5349E-05 -3.7581 -0.0021132 -3.6241 -0.0020379 562.3060350656011 163.67 0.17006 158.88 158.75 158.92 -4.7898 6 4 2 0 0 0 0.64208 1 32631 32631 0.0033805 0 1 4653000 + 50532 15947 33567 33588 49502 49502 0.04826191897132048 VGYQYVVT 8 Unmodified _VGYQYVVT_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 110.7 1 110.7 110.2 111.2 0 0 0 0 0.23584 1 21772 21772 0.12286 0 1 + 50533 17662 33568 33589 49503 49503 0.003546936318684857 VGYQYVVT 8 Unmodified _VGYQYVVT_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16455078125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 123.31 1 118.58 118.08 119.08 -4.731 0 0 0 0.21486 1 23689 23689 3.9444 0 1 + 50534 17662 33568 33589 49504 49504 0.003546936318684857 VGYQYVVT 8 Unmodified _VGYQYVVT_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 143.93 1 138.86 138.36 139.36 -5.0671 0 0 0 0.21486 1 27753 27753 0.45834 0 1 + 50535 17662 33568 33589 49505 49505 0.003546936318684857 VGYQYVVT 8 Unmodified _VGYQYVVT_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 105.26 1 101.17 100.67 101.67 -4.0913 0 0 0 0.21486 1 20242 20242 3.9444 0 1 + 50536 17662 33568 33589 49506 49506 0.003546936318684857 VGYQYVVT 8 Unmodified _VGYQYVVT_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 105.69 1 101.6 101.1 102.1 -4.0913 0 0 0 0.21486 1 20333 20333 3.9444 0 1 + 50537 17662 33568 33589 49507 49507 0.003546936318684857 VGYRKLPK 8 Unmodified _VGYRKLPK_ 0 0 0 AADACL3|p.Q198Kfs*14|6|0.23|ENSG00000188984|chr1:12725526-12725526|T/-|frameshift_variant;ENSG00000188984|ENST00000359318|AADACL3 AADACL3|p.Q198Kfs*14|6|0.23|ENSG00000188984|chr1:12725526-12725526|T/-|frameshift_variant AADACL3|p.Q198Kfs*14|6|0.23|ENSG00000188984|chr1:12725526-12725526|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.16583251953125 3 320.871155 959.591636 -0.47385 -0.00015205 1.0505 0.00033706 0.57661 0.00018502 320.8713567300005 33.617 0.4245 33.617 33.439 33.864 0 15 11 2 0 0 0 1.028 1 6142 6142 0.45834 0 1 612340 50538 2 33569 33590 49508 49508 0.11022360785045748 VGYRNKNV 8 Unmodified _VGYRNKNV_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;CCDC59|p.N163Ifs*5|1|0.04|ENSG00000133773|chr12:82354571-82354572|-/CCTAAATATA|frameshift_variant;ENSG00000133773|ENST00000256151|CCDC59 ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.17852783203125 3 317.178648 948.514114 NaN NaN NaN NaN NaN NaN NaN 115.69 1 111.33 110.83 111.83 -4.3585 0 0 0 0.21486 1 22272 22272 1.6526 0.45928 1 50539 422 33570 33591 49509 49509 0.037797228488557266 VGYRTPVK 8 Unmodified _VGYRTPVK_ 0 0 0 REV__ENSG00000158887|ENST00000533357|MPZ REV__ENSG00000158887|ENST00000533357|MPZ MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 307.18365478515625 3 307.18351 918.528701 NaN NaN NaN NaN NaN NaN NaN 31.89 1 31.89 31.39 32.39 0 0 0 0 0.2396 1 5774 5774 0 0 1 + 50540 17353 33571 33592 49510 49510 0.06617794996998327 VGYSVVVT 8 Unmodified _VGYSVVVT_ 0 0 0 REV__ENSG00000125863|ENST00000347364|MKKS REV__ENSG00000125863|ENST00000347364|MKKS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 412.23248291015625 2 412.231636 822.448719 NaN NaN NaN NaN NaN NaN NaN 137.27 1 132.63 132.13 133.13 -4.6413 0 0 0 0.21486 1 27091 27091 0.79363 0 1 + 50541 15838 33572 33593 49511 49511 0.030393086031608618 VGYTLLSR 8 Unmodified _VGYTLLSR_ 0 0 0 REV__HSPA12A|p.P534L|1|0.58|ENSG00000165868|chr10:116675208-116675208|G/A|missense_variant REV__HSPA12A|p.P534L|1|0.58|ENSG00000165868|chr10:116675208-116675208|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.0215759277344 3 303.511515 907.512717 -0.57835 -0.00017554 0.64948 0.00019712 0.071128 2.1588E-05 303.51165825508735 15.737 0.48408 15.737 15.539 16.023 0 39 13 4 0 0 0 1.0281 1 2468 2468 0 0 1 11494000 + 50542 23641 33573 33594 49512 49512 0.05526088760097991 VGYTLLSR 8 Unmodified _VGYTLLSR_ 0 0 0 REV__HSPA12A|p.P534L|1|0.58|ENSG00000165868|chr10:116675208-116675208|G/A|missense_variant REV__HSPA12A|p.P534L|1|0.58|ENSG00000165868|chr10:116675208-116675208|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 303.511515 907.512717 -0.59215 -0.00017973 0.6105 0.00018529 0.018343 5.5674E-06 303.5116553560071 16.902 0.45204 15.686 15.495 15.947 -1.2159 -0.0035895 3.9032E-05 NaN 0 35 12 4 NaN NaN NaN NaN 0 NaN NaN 0 10165000 + 50543 23641 33573 33594 0.05526088760097991 VGYTLLSR 8 Unmodified _VGYTLLSR_ 0 0 0 REV__HSPA12A|p.P534L|1|0.58|ENSG00000165868|chr10:116675208-116675208|G/A|missense_variant REV__HSPA12A|p.P534L|1|0.58|ENSG00000165868|chr10:116675208-116675208|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 303.511515 907.512717 -0.47323 -0.00014363 0.44747 0.00013581 -0.025763 -7.8193E-06 303.5116094326528 16.918 0.41398 15.646 15.454 15.868 -1.2722 -0.043653 -0.00010941 NaN 0 29 11 4 NaN NaN NaN NaN 0 NaN NaN 0 7499300 + 50544 23641 33573 33594 0.05526088760097991 VGYTRILFFDQ 11 Unmodified _VGYTRILFFDQ_ 0 0 0 nc|ENSG00000136450|Q07955-3|SRSF1 nc|ENSG00000136450|Q07955-3|SRSF1 nc|ENSG00000136450|Q07955-3|SRSF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75299072265625 3 453.574955 1357.70304 -0.2922 -0.00013254 -0.47144 -0.00021383 -0.76364 -0.00034637 453.574832309452 41.472 0.93134 38.837 38.293 39.225 -2.6348 76 26 4 0 0 0 0.94506 1 7761 7761 6.2344 5.1246 1 3218200 50545 12343 33574 33595 49513 49513 0.03849330631669545 VGYVERAVSD 10 Unmodified _VGYVERAVSD_ 0 0 0 STX1B|p.D241G|1|0.18|ENSG00000099365|chr16:30993194-30993194|T/C|missense_variant STX1B|p.D241G|1|0.18|ENSG00000099365|chr16:30993194-30993194|T/C|missense_variant STX1B|p.D241G|1|0.18|ENSG00000099365|chr16:30993194-30993194|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7809448242188 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 20.687 1 20.687 20.187 21.187 0 0 0 0 2.8426 1 3434 3434 0.043787 0 1 50546 25797 33575 33596 49514 49514 -0.0026405277030789875 VGYVGGGA 8 Unmodified _VGYVGGGA_ 0 0 0 ENST00000266269.9_2_22:31741609-31741828:-|nuORF ENST00000266269.9_2_22:31741609-31741828:-|nuORF ENST00000266269.9_2_22:31741609-31741828:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.1611022949219 2 340.174121 678.33369 NaN NaN NaN NaN NaN NaN NaN 74.233 1 74.233 73.733 74.733 0 0 0 0 0.21486 1 14409 14409 0.79363 0 1 50547 8373 33576 33597 49515 49515 -0.01834375807993638 VGYVGGGA 8 Unmodified _VGYVGGGA_ 0 0 0 ENST00000266269.9_2_22:31741609-31741828:-|nuORF ENST00000266269.9_2_22:31741609-31741828:-|nuORF ENST00000266269.9_2_22:31741609-31741828:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.1235046386719 2 340.174121 678.33369 NaN NaN NaN NaN NaN NaN NaN 99.116 1 99.116 98.616 99.616 0 0 0 0 0.21486 1 19437 19437 0.79363 0 1 50548 8373 33576 33597 49516 49516 -0.01834375807993638 VGYVGGGA 8 Unmodified _VGYVGGGA_ 0 0 0 ENST00000266269.9_2_22:31741609-31741828:-|nuORF ENST00000266269.9_2_22:31741609-31741828:-|nuORF ENST00000266269.9_2_22:31741609-31741828:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 340.1866149902344 2 340.174121 678.33369 NaN NaN NaN NaN NaN NaN NaN 81.393 1 77.836 77.336 78.336 -3.557 0 0 0 0.21486 1 15895 15895 0.79363 0 1 50549 8373 33576 33597 49517 49517 -0.01834375807993638 VGYVGGGA 8 Unmodified _VGYVGGGA_ 0 0 0 ENST00000266269.9_2_22:31741609-31741828:-|nuORF ENST00000266269.9_2_22:31741609-31741828:-|nuORF ENST00000266269.9_2_22:31741609-31741828:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 340.1913757324219 2 340.174121 678.33369 NaN NaN NaN NaN NaN NaN NaN 91.806 1 87.712 87.212 88.212 -4.0946 0 0 0 0.21486 1 17485 17485 0.79363 0 1 50550 8373 33576 33597 49518 49518 -0.01834375807993638 VGYVLGPG 8 Unmodified _VGYVLGPG_ 0 0 0 REV__nc|ENSG00000136068|O75369-7|FLNB REV__nc|ENSG00000136068|O75369-7|FLNB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.20648193359375 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 51.115 1 48.233 47.733 48.733 -2.8824 0 0 0 0.21486 1 9708 9708 6.3541 0 1 + 50551 16311 33577 33598 49519 49519 0.022150567772428076 VGYYETDNY 9 Unmodified _VGYYETDNY_ 0 0 0 ENST00000489366.2_1_1:46871719-46874871:+|nuORF;ENST00000484697.5_1_1:46871424-46877830:+|nuORF;ENSG00000117480|ENST00000243167|FAAH ENST00000489366.2_1_1:46871719-46874871:+|nuORF ENST00000489366.2_1_1:46871719-46874871:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.1083679199219 3 375.157466 1122.45057 NaN NaN NaN NaN NaN NaN NaN 125.72 1 125.72 125.22 126.22 0 0 0 0 0.23508 1 24800 24800 1.1933 0.12188 1 50552 2987 33578 33599 49520 49520 -0.10575727169566562 VHADLLTAALQ 11 Unmodified _VHADLLTAALQ_ 0 0 0 ENST00000458001.2_1_13:114537574-114541183:+|nuORF ENST00000458001.2_1_13:114537574-114541183:+|nuORF ENST00000458001.2_1_13:114537574-114541183:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3255615234375 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 118.45 1 113.84 113.34 114.34 -4.6106 0 0 0 0.22943 1 22727 22727 8.7454 0.58988 1 50553 10041 33579 33600 49521 49521 0.06533086051786086 VHADSSRSH 9 Unmodified _VHADSSRSH_ 0 0 0 nc|ENSG00000125337|Q9UIL4-2|KIF25;ENSG00000125337|ENST00000643607|KIF25 nc|ENSG00000125337|Q9UIL4-2|KIF25 nc|ENSG00000125337|Q9UIL4-2|KIF25 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 332.0057067871094 3 332.493295 994.458055 0.62784 0.00020875 -3.1667 -0.0010529 -2.5389 -0.00084416 332.49206383178006 27.577 0.27824 25.795 25.665 25.943 -1.7821 9 7 2 0 0 0 0.88211 1 4917 4917 0 0 1 183710 50554 3350 33580 33601 49522 49522 -0.039395300586193116 VHEQQMDDNE 10 Unmodified _VHEQQMDDNE_ 0 0 0 nc|ENSG00000005889|P17010-2|ZFX;ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX;ZFX|p.G514Efs*21|1|0.32|ENSG00000005889|chrX:24210493-24210493|A/-|frameshift_variant nc|ENSG00000005889|P17010-2|ZFX nc|ENSG00000005889|P17010-2|ZFX MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7661743164062 2 622.746041 1243.47753 NaN NaN NaN NaN NaN NaN NaN 83.621 1 83.621 83.121 84.121 0 0 0 0 2.8426 1 16303 16303 0.0013812 0 1 50555 999 33581 33602 49523 49523 -0.13446986620670032 VHETDTDII 9 Unmodified _VHETDTDII_ 0 0 0 REV__ENST00000420193.1_1_10:54064055-54073228:-|nuORF REV__ENST00000420193.1_1_10:54064055-54073228:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2572631835938 2 521.756204 1041.49785 0.37091 0.00019352 -0.68988 -0.00035995 -0.31897 -0.00016642 521.7558719051748 83.441 0.43024 83.441 83.185 83.615 0 20 11 2 0 0 0 0.22334 1 16281 16281 36.044 5.8194 1 1952000 + 50556 21502 33582 33603 49524 49524 -0.021234478985661553 VHETDTDII 9 Unmodified _VHETDTDII_ 0 0 0 REV__ENST00000420193.1_1_10:54064055-54073228:-|nuORF REV__ENST00000420193.1_1_10:54064055-54073228:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2581787109375 2 521.756204 1041.49785 -0.2951 -0.00015397 0.39491 0.00020605 0.099806 5.2074E-05 521.7563434086861 86.968 0.49316 83.241 82.975 83.468 -3.727 20 13 2 0 0 0 0.32428 1 16995 16995 30.225 0 1 1380300 + 50557 21502 33582 33603 49525 49525 -0.021234478985661553 VHEVIERNRNQ 11 Unmodified _VHEVIERNRNQ_ 0 0 0 REV__nc|ENSG00000188266|A2RU49-3|HYKK REV__nc|ENSG00000188266|A2RU49-3|HYKK MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2478332519531 3 465.248013 1392.72221 NaN NaN NaN NaN NaN NaN NaN 175.23 1 170.34 169.84 170.84 -4.8916 0 0 0 0.22632 1 34924 34924 0.172 0.14579 1 + 50558 19139 33583 33604 49526 49526 0.041556799752925144 VHFFQDMAT 9 Unmodified _VHFFQDMAT_ 0 0 0 REV__LPP|p.V436F|1|0.16|ENSG00000145012|chr3:188760178-188760178|G/T|missense_variant REV__LPP|p.V436F|1|0.16|ENSG00000145012|chr3:188760178-188760178|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7742309570312 2 548.250034 1094.48552 0.01214 6.656E-06 1.5818 0.00086721 1.5939 0.00087387 548.2516839112628 40.421 0.603 37.881 37.71 38.313 -2.5398 38 16 3 0 0 0 0.23667 1 7292 7292 34.102 12.356 1 5320500 + 50559 23807 33584 33605 49527 49527 -0.0579476284260636 VHFFQDMAT 9 Unmodified _VHFFQDMAT_ 0 0 0 REV__LPP|p.V436F|1|0.16|ENSG00000145012|chr3:188760178-188760178|G/T|missense_variant REV__LPP|p.V436F|1|0.16|ENSG00000145012|chr3:188760178-188760178|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7744140625 2 548.250034 1094.48552 0.16903 9.2669E-05 1.6912 0.00092723 1.8603 0.0010199 548.2512684224636 40.367 0.53154 37.877 37.721 38.252 -2.4896 31 14 3 0 0 0 0.36689 1 7258 7258 26.884 11.036 1 3616600 + 50560 23807 33584 33605 49528 49528 -0.0579476284260636 VHFGFHKG 8 Unmodified _VHFGFHKG_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647033691406 3 310.16445 927.471521 NaN NaN NaN NaN NaN NaN NaN 172.36 1 167.46 166.96 167.96 -4.8977 0 0 0 0.2396 1 34184 34184 0.12286 0 1 50561 2678 33585 33606 49529 49529 0.004883725112790671 VHFHHLTNNLY 11 Unmodified _VHFHHLTNNLY_ 0 0 0 REV__ENST00000230461.10_1_6:75965301-75965511:-|nuORF REV__ENST00000230461.10_1_6:75965301-75965511:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2590026855469 3 465.570316 1393.68912 -0.0008058 -3.7516E-07 -0.81059 -0.00037739 -0.81139 -0.00037776 465.56982131347945 71.426 0.45576 71.426 71.214 71.669 0 24 12 3 0 0 0 0.96157 1 13832 13832 1.2148 0.10508 1 2159000 + 50562 20066 33586 33607 49530 49530 0.008020979232242098 VHFPPDLH 8 Unmodified _VHFPPDLH_ 0 0 0 REV__ENST00000401766.6_2_17:28545150-28545855:-|nuORF REV__ENST00000401766.6_2_17:28545150-28545855:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24761962890625 2 481.248152 960.481751 NaN NaN NaN NaN NaN NaN NaN 161.39 1 156.59 156.09 157.09 -4.7952 0 0 0 0.23749 1 32095 32095 0.12286 0 1 + 50563 21361 33587 33608 49531 49531 -7.064554154112557E-05 VHFSREAQA 9 Unmodified _VHFSREAQA_ 0 0 0 REV__ENSG00000266714|ENST00000645453|MYO15B REV__ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.265625 2 522.764697 1043.51484 0.12393 6.4787E-05 0.57816 0.00030224 0.70209 0.00036703 523.2666625744699 17.264 0.28036 17.264 17.064 17.345 0 6 4 2 0 0 0 0.52396 1 2706 2706 18.146 1.0335 1 3728400 + 50564 19903 33588 33609 49532 49532 -0.005174825020958451 VHFSREAQA 9 Unmodified _VHFSREAQA_ 0 0 0 REV__ENSG00000266714|ENST00000645453|MYO15B REV__ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2667236328125 2 522.764697 1043.51484 -1.027 -0.00053687 1.2652 0.0006614 0.2382 0.00012452 522.7654509375997 18.424 0.27361 17.151 16.929 17.203 -1.2731 17 5 4 0 0 0 0.57447 1 2739 2739 14.838 0 1 10473000 + 50565 19903 33588 33609 49533 49533 -0.005174825020958451 VHFSREAQA 9 Unmodified _VHFSREAQA_ 0 0 0 REV__ENSG00000266714|ENST00000645453|MYO15B REV__ENSG00000266714|ENST00000645453|MYO15B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 522.764697 1043.51484 0.12393 6.4787E-05 0.57816 0.00030224 0.70209 0.00036703 523.2666625744699 17.264 0.28036 17.264 17.064 17.345 0 0.085032 -0.00061515 NaN 18.146 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 3728400 + 50566 19903 33588 33609 -0.005174825020958451 VHFSREAQA 9 Unmodified _VHFSREAQA_ 0 0 0 REV__ENSG00000266714|ENST00000645453|MYO15B REV__ENSG00000266714|ENST00000645453|MYO15B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.764697 1043.51484 -1.027 -0.00053687 1.2652 0.0006614 0.2382 0.00012452 522.7654509375997 18.424 0.27361 17.151 16.929 17.203 -1.2731 -0.027715 0.00010315 NaN 18.146 17 5 4 NaN NaN NaN NaN 0 NaN NaN 0 10473000 + 50567 19903 33588 33609 -0.005174825020958451 VHFSREAQA 9 Unmodified _VHFSREAQA_ 0 0 0 REV__ENSG00000266714|ENST00000645453|MYO15B REV__ENSG00000266714|ENST00000645453|MYO15B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 522.764697 1043.51484 -1.0825 -0.00056588 1.2805 0.00066939 0.19802 0.00010352 522.7653950184682 18.636 0.21222 17.121 16.986 17.198 -1.5148 -0.057317 0.00011915 NaN 18.146 16 5 4 NaN NaN NaN NaN 0 NaN NaN 0 5112000 + 50568 19903 33588 33609 -0.005174825020958451 VHGRASRQLQ 10 Unmodified _VHGRASRQLQ_ 0 0 0 XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant;ENST00000575674.1_1_16:17292067-17352884:-|nuORF;ENSG00000103489|ENST00000261381|XYLT1 XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.323974609375 2 576.323245 1150.63194 NaN NaN NaN NaN NaN NaN NaN 115.84 1 115.84 115.34 116.34 0 0 0 0 0.22588 1 22803 22803 12.241 0.60036 1 50569 26587 33589 33610 49534 49534 0.06264675437500955 VHGRRAGP 8 Unmodified _VHGRRAGP_ 0 0 0 REV__ENST00000356518.6_1_20:3654099-3654460:-|nuORF REV__ENST00000356518.6_1_20:3654099-3654460:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2433166503906 2 425.243735 848.472918 0.16381 6.9659E-05 -1.7708 -0.00075301 -1.607 -0.00068335 425.2430044486347 25.943 0.38199 25.943 25.774 26.156 0 16 10 2 0 0 0 0.76728 1 4556 4556 5.7604 0 1 1094000 + 50570 20812 33590 33611 49535 49535 0.042620066000381485 VHGRRAGP 8 Unmodified _VHGRRAGP_ 0 0 0 REV__ENST00000356518.6_1_20:3654099-3654460:-|nuORF REV__ENST00000356518.6_1_20:3654099-3654460:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2431945800781 2 425.243735 848.472918 0.69818 0.00029689 -1.5674 -0.00066651 -0.86918 -0.00036961 425.2429884978199 27.944 0.45685 25.988 25.803 26.26 -1.9561 21 12 2 0 0 0 0.64227 3 4966 4966;5002;5018 19.439 9.2556 1 1798500 + 50571 20812 33590 33611 49536;49537;49538 49536 0.042620066000381485 VHGRRAGP 8 Unmodified _VHGRRAGP_ 0 0 0 REV__ENST00000356518.6_1_20:3654099-3654460:-|nuORF REV__ENST00000356518.6_1_20:3654099-3654460:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 425.243735 848.472918 0.20083 8.5403E-05 -1.0645 -0.00045268 -0.8637 -0.00036728 425.24327429893555 27.772 0.41618 26.017 25.795 26.211 -1.7552 0.028847 0.00011516 NaN 19.439 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1319900 + 50572 20812 33590 33611 0.042620066000381485 VHGRRAGP 8 Unmodified _VHGRRAGP_ 0 0 0 REV__ENST00000356518.6_1_20:3654099-3654460:-|nuORF REV__ENST00000356518.6_1_20:3654099-3654460:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 425.243735 848.472918 -0.018165 -7.7245E-06 -0.54768 -0.0002329 -0.56585 -0.00024062 425.2433384050902 28 0.45285 26.004 25.752 26.204 -1.9962 0.016058 0.00055473 NaN 19.439 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1108700 + 50573 20812 33590 33611 0.042620066000381485 VHHAFLVVTE 10 Unmodified _VHHAFLVVTE_ 0 0 0 CLCN6|p.P634L|1|0.73|ENSG00000011021|chr1:11836074-11836074|C/T|missense_variant CLCN6|p.P634L|1|0.73|ENSG00000011021|chr1:11836074-11836074|C/T|missense_variant CLCN6|p.P634L|1|0.73|ENSG00000011021|chr1:11836074-11836074|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.333984375 2 576.314023 1150.61349 NaN NaN NaN NaN NaN NaN NaN 139.13 1 134.18 133.68 134.68 -4.952 0 0 0 0.22583 1 26760 26760 13.906 0.86358 1 50574 570 33591 33612 49539 49539 0.044211207429498245 VHHPQKHH 8 Unmodified _VHHPQKHH_ 0 0 0 REV__ENST00000330495.8_3_22:32100664-32108104:-|nuORF REV__ENST00000330495.8_3_22:32100664-32108104:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.07781982421875 3 340.514253 1018.52093 -2.2938 -0.00078106 0.67644 0.00023034 -1.6173 -0.00055072 340.5144700393556 12.443 0.14246 11.323 11.238 11.38 -1.1206 5 3 2 0 0 0 1.0262 1 1476 1476 1.8442 1.4435 1 290390 + 50575 20607 33592 33613 49540 49540 0.0124108052008296 VHHPQKHH 8 Unmodified _VHHPQKHH_ 0 0 0 REV__ENST00000330495.8_3_22:32100664-32108104:-|nuORF REV__ENST00000330495.8_3_22:32100664-32108104:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 340.514253 1018.52093 -0.93167 -0.00031725 -0.65911 -0.00022444 -1.5908 -0.00054168 340.51402035419346 12.443 0.13837 11.434 11.348 11.486 -1.0098 0.083789 -0.00040767 NaN 1.8442 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 1449600 + 50576 20607 33592 33613 0.0124108052008296 VHHPQKHH 8 Unmodified _VHHPQKHH_ 0 0 0 REV__ENST00000330495.8_3_22:32100664-32108104:-|nuORF REV__ENST00000330495.8_3_22:32100664-32108104:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 340.514253 1018.52093 -0.67054 -0.00022833 -0.46814 -0.00015941 -1.1387 -0.00038774 340.84845337869365 12.422 0.13539 11.293 11.211 11.346 -1.1293 -0.056802 -0.00021258 NaN 1.8442 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 353320 + 50577 20607 33592 33613 0.0124108052008296 VHHQGLES 8 Unmodified _VHHQGLES_ 0 0 0 REV__ENST00000528041.5_1_11:47198114-47198174:-|nuORF REV__ENST00000528041.5_1_11:47198114-47198174:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7525634765625 2 453.725041 905.435529 NaN NaN NaN NaN NaN NaN NaN 41.416 1 38.926 38.426 39.426 -2.4896 0 0 0 0.20896 1 7433 7433 18.135 1.1927 1 + 50578 22718 33593 33614 49541 49541 -0.020971294562400544 VHIDQGHT 8 Unmodified _VHIDQGHT_ 0 0 0 REV__ENSG00000166118|ENST00000299140|SPATA19 REV__ENSG00000166118|ENST00000299140|SPATA19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75299072265625 2 453.725041 905.435529 NaN NaN NaN NaN NaN NaN NaN 41.552 1 38.917 38.417 39.417 -2.6348 0 0 0 0.20896 1 7761 7761 18.135 0 1 + 50579 17825 33594 33615 49542 49542 -0.020971294562286857 VHILFYST 8 Unmodified _VHILFYST_ 0 0 0 REV__ENST00000483628.1_1:206580415-206580496:+|nuORF REV__ENST00000483628.1_1:206580415-206580496:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2636413574219 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 175.91 1 171.01 170.51 171.51 -4.9008 0 0 0 0.21486 1 35065 35065 2.5775 0.51773 1 + 50580 22202 33595 33616 49543 49543 0.027349729028628644 VHKPLHMQ 8 Unmodified _VHKPLHMQ_ 0 0 0 OSR2|p.T248P|1|0.12|ENSG00000164920|chr8:98950741-98950741|A/C|missense_variant OSR2|p.T248P|1|0.12|ENSG00000164920|chr8:98950741-98950741|A/C|missense_variant OSR2|p.T248P|1|0.12|ENSG00000164920|chr8:98950741-98950741|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 495.2610168457031 2 495.271104 988.527655 NaN NaN NaN NaN NaN NaN NaN 151.35 1 151.35 150.85 151.85 0 0 0 0 0.23312 1 30310 30310 6.2058 1.3088 1 50581 12741 33596 33617 49544 49544 0.03293257356438062 VHLDVGDVH 9 Unmodified _VHLDVGDVH_ 0 0 0 REV__nc|ENSG00000164951|Q9P0J1-2|PDP1 REV__nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 330.9970397949219 3 330.838291 989.493044 0.24192 8.0037E-05 0.75354 0.0002493 0.99546 0.00032933 330.83852534152527 27.865 0.52631 26.11 25.864 26.39 -1.7552 26 14 2 0 0 0 0.87836 1 4651 4651 2.9952 0.26005 1 2438900 + 50582 17728 33597 33618 49545 49545 -0.0021228725065611798 VHLDVGDVH 9 Unmodified _VHLDVGDVH_ 0 0 0 REV__nc|ENSG00000164951|Q9P0J1-2|PDP1 REV__nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 330.838291 989.493044 0.57068 0.0001888 0.40894 0.00013529 0.97963 0.0003241 330.8383920531139 27.972 0.52496 26.016 25.735 26.26 -1.9561 -0.080382 -0.00050746 NaN 2.9952 37 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2357200 + 50583 17728 33597 33618 -0.0021228725065611798 VHLDVGDVH 9 Unmodified _VHLDVGDVH_ 0 0 0 REV__nc|ENSG00000164951|Q9P0J1-2|PDP1 REV__nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 330.838291 989.493044 -0.41858 -0.00013848 1.4343 0.00047453 1.0157 0.00033605 330.838835346585 28.044 0.52409 26.047 25.822 26.346 -1.9962 -0.04907 0.00051024 NaN 2.9952 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1881400 + 50584 17728 33597 33618 -0.0021228725065611798 VHLGDIARY 9 Unmodified _VHLGDIARY_ 0 0 0 SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-5|SMG7 SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2694091796875 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 54.623 1 54.623 54.123 55.123 0 0 0 0 0.19684 1 10418 10418 0.40827 0 1 50585 2943 33598 33619 49546 49546 0.03640278537386621 VHLGHHCL 8 Unmodified _VHLGHHCL_ 0 0 0 ENST00000503997.5_1_4:140213746-140216248:-|nuORF ENST00000503997.5_1_4:140213746-140216248:-|nuORF ENST00000503997.5_1_4:140213746-140216248:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2326965332031 2 458.234522 914.45449 NaN NaN NaN NaN NaN NaN NaN 14.332 1 13.121 12.621 13.621 -1.2106 0 0 0 0.2396 1 1891 1891 0 0 1 50586 10650 33599 33620 49547 49547 -0.006158713661875481 VHLGSLER 8 Unmodified _VHLGSLER_ 0 0 0 RUSC2|p.R510H|1|0.37|ENSG00000198853|chr9:35548050-35548050|G/A|missense_variant RUSC2|p.R510H|1|0.37|ENSG00000198853|chr9:35548050-35548050|G/A|missense_variant RUSC2|p.R510H|1|0.37|ENSG00000198853|chr9:35548050-35548050|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.0394592285156 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 30.242 1 28.349 27.849 28.849 -1.8928 0 0 0 0.21486 1 5175 5175 1.6526 0 1 50587 25630 33600 33621 49548 49548 0.044843204745689036 VHLKALDN 8 Unmodified _VHLKALDN_ 0 0 0 REV__nc|ENSG00000165325|Q05D60-2|DEUP1 REV__nc|ENSG00000165325|Q05D60-2|DEUP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.0397644042969 3 303.843265 908.507966 -0.49085 -0.00014914 -0.26284 -7.9863E-05 -0.7537 -0.00022901 303.84344998710543 34.604 0.54507 34.604 34.278 34.823 0 25 15 2 0 0 0 1.0276 1 6335 6335 0.45834 0 1 733500 + 50588 17759 33601 33622 49549 49549 0.05005204617305026 VHLKALDN 8 Unmodified _VHLKALDN_ 0 0 0 REV__nc|ENSG00000165325|Q05D60-2|DEUP1 REV__nc|ENSG00000165325|Q05D60-2|DEUP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 303.843265 908.507966 -0.42253 -0.00012838 -0.89518 -0.00027199 -1.3177 -0.00040038 303.8433585907572 36.662 0.45964 34.325 34.061 34.521 -2.3375 -0.13956 -0.00028315 NaN 0.45834 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 400110 + 50589 17759 33601 33622 0.05005204617305026 VHLLDKILK 9 Unmodified _VHLLDKILK_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2088317871094 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 72.694 1 69.067 68.567 69.567 -3.6275 0 0 0 0.23508 1 13729 13729 0.26902 0 1 50590 5050 33602 33623 49550 49550 0.15527758679127146 VHLLDKILK 9 Unmodified _VHLLDKILK_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2008972167969 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 72.33 1 68.791 68.291 69.291 -3.5385 0 0 0 0.23508 1 13716 13716 0.26902 0 1 50591 5050 33602 33623 49551 49551 0.15527758679127146 VHLLDKILK 9 Unmodified _VHLLDKILK_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015075683594 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 72.558 1 69.019 68.519 69.519 -3.5385 0 0 0 0.23508 1 13757 13757 0.26902 0 1 50592 5050 33602 33623 49552 49552 0.15527758679127146 VHLMVHNL 8 Unmodified _VHLMVHNL_ 0 0 0 ENSG00000140829|ENST00000268482|DHX38;DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant ENSG00000140829|ENST00000268482|DHX38 ENSG00000140829|ENST00000268482|DHX38 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7655029296875 2 481.765655 961.516756 NaN NaN NaN NaN NaN NaN NaN 15.561 1 14.339 13.839 14.839 -1.2219 0 0 0 0.21486 1 2187 2187 5.2307 0 1 50593 4326 33603 33624 49553 49553 0.034458549821579254 VHLMVHNL 8 Unmodified _VHLMVHNL_ 0 0 0 ENSG00000140829|ENST00000268482|DHX38;DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant ENSG00000140829|ENST00000268482|DHX38 ENSG00000140829|ENST00000268482|DHX38 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.765625 2 481.765655 961.516756 NaN NaN NaN NaN NaN NaN NaN 15.557 1 14.204 13.704 14.704 -1.3534 0 0 0 0.21486 1 2150 2150 5.2307 0 1 50594 4326 33603 33624 49554 49554 0.034458549821579254 VHLPAGVG 8 Unmodified _VHLPAGVG_ 0 0 0 tr|U7T3D9|U7T3D9_FUSNUSmallribosomalsubunitproteinuS10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsJPE=3SV=1 tr|U7T3D9|U7T3D9_FUSNUSmallribosomalsubunitproteinuS10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsJPE=3SV=1 tr|U7T3D9|U7T3D9_FUSNUSmallribosomalsubunitproteinuS10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsJPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2195129394531 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 49.008 1 46.001 45.501 46.501 -3.0068 0 0 0 0.21486 1 8980 8980 2.8892 0 1 50595 26396 33604 33625 49555 49555 0.038898788713822796 VHLPAGVG 8 Unmodified _VHLPAGVG_ 0 0 0 tr|U7T3D9|U7T3D9_FUSNUSmallribosomalsubunitproteinuS10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsJPE=3SV=1 tr|U7T3D9|U7T3D9_FUSNUSmallribosomalsubunitproteinuS10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsJPE=3SV=1 tr|U7T3D9|U7T3D9_FUSNUSmallribosomalsubunitproteinuS10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsJPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2184143066406 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 60.563 1 57.339 56.839 57.839 -3.2237 0 0 0 0.21486 1 11328 11328 6.3541 0 1 50596 26396 33604 33625 49556 49556 0.038898788713822796 VHLPTIIL 8 Unmodified _VHLPTIIL_ 0 0 0 REV__ENST00000448120.6_1_12:3049550-3049889:+|nuORF REV__ENST00000448120.6_1_12:3049550-3049889:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7687072753906 2 453.294571 904.574589 0.05241 2.3757E-05 0.32753 0.00014847 0.37994 0.00017222 453.2947396383633 25.755 0.34159 24.12 23.96 24.301 -1.6347 16 9 2 0 0 0 1.0271 1 4254 4254 2.5775 0 1 1179900 + 50597 21777 33605 33626 49557 49557 0.11848440179244335 VHLPTIIL 8 Unmodified _VHLPTIIL_ 0 0 0 REV__ENST00000448120.6_1_12:3049550-3049889:+|nuORF REV__ENST00000448120.6_1_12:3049550-3049889:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.74853515625 2 453.294571 904.574589 0.10161 4.6058E-05 0.27454 0.00012445 0.37615 0.00017051 453.29467833660993 26.535 0.24721 24.9 24.754 25.001 -1.6347 10 6 2 0 0 0 1.028 1 4389 4389 0.79363 0 1 408100 + 50598 21777 33605 33626 49558 49558 0.11848440179244335 VHLPTIIL 8 Unmodified _VHLPTIIL_ 0 0 0 REV__ENST00000448120.6_1_12:3049550-3049889:+|nuORF REV__ENST00000448120.6_1_12:3049550-3049889:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.74822998046875 2 453.294571 904.574589 0.029723 1.3473E-05 0.25971 0.00011772 0.28943 0.0001312 453.2945797013465 26.726 0.3081 24.804 24.675 24.984 -1.9222 12 8 2 0 0 0 1.028 1 4448 4448 0.79363 0 1 291870 + 50599 21777 33605 33626 49559 49559 0.11848440179244335 VHLPTIIL 8 Unmodified _VHLPTIIL_ 0 0 0 REV__ENST00000448120.6_1_12:3049550-3049889:+|nuORF REV__ENST00000448120.6_1_12:3049550-3049889:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.294571 904.574589 0.9434 0.00042764 -0.71885 -0.00032585 0.22455 0.00010179 453.29427575728226 26.687 0.33527 24.905 24.691 25.026 -1.7821 0.035315 -0.00049635 NaN 0.79363 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 478280 + 50600 21777 33605 33626 0.11848440179244335 VHLRRAAAGP 10 Unmodified _VHLRRAAAGP_ 0 0 0 REV__TRIM71|p.A317Vfs*56|1|0.05|ENSG00000206557|chr3:32873914-32873915|-/T|frameshift_variant REV__TRIM71|p.A317Vfs*56|1|0.05|ENSG00000206557|chr3:32873914-32873915|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.2122802734375 3 349.877192 1046.60975 NaN NaN NaN NaN NaN NaN NaN 69.097 1 65.707 65.207 66.207 -3.3903 0 0 0 0.22588 1 13059 13059 2.086 0.24177 1 + 50601 19624 33606 33627 49560 49560 0.08830495759730184 VHNHIIDY 8 Unmodified _VHNHIIDY_ 0 0 0 ENST00000538658.5_1_11:95555681-95555732:+|nuORF ENST00000538658.5_1_11:95555681-95555732:+|nuORF ENST00000538658.5_1_11:95555681-95555732:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.073974609375 3 337.506653 1009.49813 0.13443 4.537E-05 -0.093576 -3.1582E-05 0.040851 1.3787E-05 337.50654619350667 26.256 0.34595 24.621 24.408 24.754 -1.6347 13 9 2 0 0 0 1.0262 1 4355 4355 0 0 1 579710 50602 11050 33607 33628 49561 49561 -0.0062398338806133324 VHNHIIDY 8 Unmodified _VHNHIIDY_ 0 0 0 ENST00000538658.5_1_11:95555681-95555732:+|nuORF ENST00000538658.5_1_11:95555681-95555732:+|nuORF ENST00000538658.5_1_11:95555681-95555732:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 337.506653 1009.49813 0.8206 0.00027696 -0.91479 -0.00030875 -0.09419 -3.179E-05 337.5062229610579 26.351 0.31124 24.569 24.449 24.76 -1.7821 -0.026207 -0.00043704 NaN 0 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 554590 50603 11050 33607 33628 -0.0062398338806133324 VHNSLNEW 8 Unmodified _VHNSLNEW_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant REV__ENSG00000054654|ENST00000555002|SYNE2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.99945068359375 3 333.494524 997.461744 0.0098868 3.2972E-06 -0.12741 -4.2489E-05 -0.11752 -3.9192E-05 333.49447432611584 47.319 1.7437 44.377 44 45.744 -2.9421 75 49 2 0 0 0 1.0276 1 8696 8696 1.8442 1.5752 1 776590 + 50604 14106;24761 33608 33629 49562 49562 -0.03708860284768889 VHPEPHVT 8 Unmodified _VHPEPHVT_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN REV__ENSG00000155657|ENST00000589042|TTN;ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.23809814453125 2 458.237784 914.461016 -0.12358 -5.6631E-05 0.88877 0.00040727 0.76518 0.00035064 458.2381682955414 59.788 0.94103 56.855 56.469 57.41 -2.9333 35 26 2 0 0 0 0.70613 1 11524 11524 13.508 13.508 1 1770400 50605 5053;17221 33609 33630 49563 49563 0.00036345066178000707 VHPEPHVT 8 Unmodified _VHPEPHVT_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN REV__ENSG00000155657|ENST00000589042|TTN;ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.238037109375 2 458.237784 914.461016 0.036249 1.6611E-05 0.68976 0.00031607 0.72601 0.00033268 458.2380597892279 60.244 0.67417 56.93 56.516 57.19 -3.3139 38 18 3 0 0 0 0.70613 1 11222 11222 13.508 13.508 1 1394700 50606 5053;17221 33609 33630 49564 49564 0.00036345066178000707 VHPRPRMS 8 Unmodified _VHPRPRMS_ 0 0 0 ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640075683594 2 490.266353 978.518153 NaN NaN NaN NaN NaN NaN NaN 72.471 1 68.843 68.343 69.343 -3.6275 0 0 0 0.22699 1 13684 13684 0.62683 0.21856 1 50607 11780 33610 33631 49565 49565 0.02803489070925025 VHREWAPYRNR 11 Unmodified _VHREWAPYRNR_ 0 0 0 REV__ENSG00000206579|ENST00000327381|XKR4 REV__ENSG00000206579|ENST00000327381|XKR4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3882446289062 2 742.386908 1482.75926 NaN NaN NaN NaN NaN NaN NaN 123.22 1 118.65 118.15 119.15 -4.5757 0 0 0 0.22632 1 24294 24294 0.50596 0.50596 1 + 50608 19626 33611 33632 49566 49566 0.03719396311680612 VHRNMSGK 8 Unmodified _VHRNMSGK_ 0 0 0 REV__ENST00000462210.1_1_22:21088329-21088754:-|nuORF REV__ENST00000462210.1_1_22:21088329-21088754:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647033691406 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 172.37 1 167.48 166.98 167.98 -4.8977 0 0 0 0.21486 1 34187 34187 0.40072 0 1 + 50609 19790 33612 33633 49567 49567 0.004232097999306461 VHRVLAEL 8 Unmodified _VHRVLAEL_ 0 0 0 ENSG00000137310|ENST00000376257|TCF19 ENSG00000137310|ENST00000376257|TCF19 ENSG00000137310|ENST00000376257|TCF19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1253356933594 3 312.859027 935.55525 -0.37462 -0.0001172 0.39902 0.00012484 0.024404 7.6351E-06 312.85909505519237 28.383 0.63091 26.387 26.029 26.66 -1.9962 35 17 3 0 0 0 1.0276 1 4770 4770 1.8442 0 1 1297300 50610 4077 33613 33634 49568 49568 0.08489483888331506 VHRVLAEL 8 Unmodified _VHRVLAEL_ 0 0 0 ENSG00000137310|ENST00000376257|TCF19 ENSG00000137310|ENST00000376257|TCF19 ENSG00000137310|ENST00000376257|TCF19 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 312.859027 935.55525 -0.4231 -0.00013237 0.39642 0.00012402 -0.026678 -8.3466E-06 312.85914170493703 26.502 0.51301 26.502 26.224 26.737 0 0.084763 0.00026578 NaN 1.8442 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2334800 50611 4077 33613 33634 0.08489483888331506 VHRVLAEL 8 Unmodified _VHRVLAEL_ 0 0 0 ENSG00000137310|ENST00000376257|TCF19 ENSG00000137310|ENST00000376257|TCF19 ENSG00000137310|ENST00000376257|TCF19 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 312.859027 935.55525 0.52567 0.00016446 -0.3504 -0.00010963 0.17527 5.4835E-05 312.85888018129015 28.282 0.58714 26.326 26.016 26.603 -1.9561 -0.09131 -0.00043517 NaN 1.8442 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1014300 50612 4077 33613 33634 0.08489483888331506 VHRVLAEL 8 Unmodified _VHRVLAEL_ 0 0 0 ENSG00000137310|ENST00000376257|TCF19 ENSG00000137310|ENST00000376257|TCF19 ENSG00000137310|ENST00000376257|TCF19 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 312.859027 935.55525 0.26162 8.1851E-05 -0.0054235 -1.6968E-06 0.2562 8.0154E-05 312.8589918824735 28.21 0.59323 26.455 26.072 26.665 -1.7552 0.037233 -0.00011138 NaN 1.8442 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1254300 50613 4077 33613 33634 0.08489483888331506 VHSCCCCCCCS 11 Unmodified _VHSCCCCCCCS_ 0 0 0 REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT REV__nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 575.65966796875 2 575.640396 1149.26624 NaN NaN NaN NaN NaN NaN NaN 172.77 1 167.89 167.39 168.39 -4.881 0 0 0 0.23698 1 34317 34317 0 0 1 + 50614 21813 33614 33635 49569 49569 -0.3024238404693733 VHSHDGVV 8 Unmodified _VHSHDGVV_ 0 0 0 ENSG00000174989|ENST00000652555|FBXW8;nc|ENSG00000174989|Q8N3Y1-2|FBXW8 ENSG00000174989|ENST00000652555|FBXW8 ENSG00000174989|ENST00000652555|FBXW8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2393493652344 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 83.968 1 83.968 83.468 84.468 0 0 0 0 0.23749 1 16370 16370 0.12286 0 1 50615 6379 33615 33636 49570 49570 -0.016205144849436692 VHSTHAPT 8 Unmodified _VHSTHAPT_ 0 0 0 ENSG00000173320|ENST00000308497|STOX2;STOX2|p.F266Ifs*11|3|0.43|ENSG00000173320|chr4:184009626-184009627|-/A|frameshift_variant;nc|ENSG00000173320|Q9P2F5-2|STOX2 ENSG00000173320|ENST00000308497|STOX2 ENSG00000173320|ENST00000308497|STOX2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2423095703125 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 15.366 1 14.012 13.512 14.512 -1.3534 0 0 0 0.2396 1 2112 2112 0.12286 0 1 50616 6287 33616 33637 49571 49571 -0.01620514484955038 VHSTHAPT 8 Unmodified _VHSTHAPT_ 0 0 0 ENSG00000173320|ENST00000308497|STOX2;STOX2|p.F266Ifs*11|3|0.43|ENSG00000173320|chr4:184009626-184009627|-/A|frameshift_variant;nc|ENSG00000173320|Q9P2F5-2|STOX2 ENSG00000173320|ENST00000308497|STOX2 ENSG00000173320|ENST00000308497|STOX2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2484130859375 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 36.773 1 34.435 33.935 34.935 -2.3375 0 0 0 0.2396 1 6495 6495 0.12286 0 1 50617 6287 33616 33637 49572 49572 -0.01620514484955038 VHTAETAAPPS 11 Unmodified _VHTAETAAPPS_ 0 0 0 REV__ENSG00000118217|ENST00000367942|ATF6 REV__ENSG00000118217|ENST00000367942|ATF6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.281494140625 2 540.769645 1079.52474 0.048715 2.6343E-05 0.71851 0.00038855 0.76723 0.00041489 540.7698609087167 44.014 0.38596 41.248 41.042 41.428 -2.7661 15 10 2 0 0 0 0.86301 1 7993 7993 16.149 0 1 734820 + 50618 15544 33617 33638 49573 49573 -0.011843392873743142 VHTDVYKIERV 11 Unmodified _VHTDVYKIERV_ 0 0 0 ENST00000589189.5_1_18:33289914-33290001:+|nuORF ENST00000589189.5_1_18:33289914-33290001:+|nuORF ENST00000589189.5_1_18:33289914-33290001:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7685546875 3 453.585743 1357.7354 NaN NaN NaN NaN NaN NaN NaN 24.742 1 22.889 22.389 23.389 -1.8534 0 0 0 0.23698 1 4037 4037 1.1098 0.41209 1 50619 11582 33618 33639 49574 49574 0.07084118034663334 VHVCESDQ 8 Unmodified _VHVCESDQ_ 0 0 0 nc|ENSG00000159200|P53805-4|RCAN1;nc|ENSG00000159200|P53805-3|RCAN1;nc|ENSG00000159200|P53805-2|RCAN1;ENSG00000159200|ENST00000313806|RCAN1 nc|ENSG00000159200|P53805-4|RCAN1 nc|ENSG00000159200|P53805-4|RCAN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.6969299316406 2 458.695092 915.375631 NaN NaN NaN NaN NaN NaN NaN 83.218 1 79.61 79.11 80.11 -3.6079 0 0 0 0.23294 1 16267 16267 0.25148 0.12366 1 50620 5194 33619 33640 49575 49575 -0.08544188181781465 VHVCGQTHRTR 11 Unmodified _VHVCGQTHRTR_ 0 0 0 nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant;MYOF|p.G944Afs*24|1|0.38|ENSG00000138119|chr10:93363998-93363998|C/-|frameshift_variant;nc|ENSG00000138119|Q9NZM1-8|MYOF;nc|ENSG00000138119|Q9NZM1-7|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 431.8916320800781 3 431.891283 1292.65202 NaN NaN NaN NaN NaN NaN NaN 151.25 1 146.07 145.57 146.57 -5.1759 0 0 0 0.23698 1 29322 29322 1.2148 0.25256 1 50621 4153 33620 33641 49576 49576 0.017401031057943328 VHVEQHKKLLY 11 Unmodified _VHVEQHKKLLY_ 0 0 0 REV__ENST00000569796.1_1_16:2284038-2284419:+|nuORF REV__ENST00000569796.1_1_16:2284038-2284419:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.5068359375 3 465.269866 1392.78777 NaN NaN NaN NaN NaN NaN NaN 111.49 1 111.49 110.99 111.99 0 0 0 0 0.22632 1 21931 21931 0.03141 0 1 + 50622 13771 33621 33642 49577 49577 0.1070870116830065 VHVHDGDYVY 10 Unmodified _VHVHDGDYVY_ 0 0 0 sp|P16721|UL11P_HCMVAProteinUL11OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL11PE=2SV=1 sp|P16721|UL11P_HCMVAProteinUL11OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL11PE=2SV=1 sp|P16721|UL11P_HCMVAProteinUL11OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL11PE=2SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2730102539062 2 602.275095 1202.53564 NaN NaN NaN NaN NaN NaN NaN 67.811 1 64.702 64.202 65.202 -3.1086 0 0 0 0.22588 1 13156 13156 7.9102 0 1 50623 25749 33622 33643 49578 49578 -0.057529369130861596 VHVNIRLVE 9 Unmodified _VHVNIRLVE_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000183054|Q99666-2|RGPD5;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21673583984375 3 360.217102 1077.62948 NaN NaN NaN NaN NaN NaN NaN 149.81 1 149.81 149.31 150.31 0 0 0 0 0.23508 1 29989 29989 0.96228 0 1 50624 4961;4959;1113 33623 33644 49579 49579 0.09376826979860198 VHVNIRLVE 9 Unmodified _VHVNIRLVE_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000183054|Q99666-2|RGPD5;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2170104980469 3 360.217102 1077.62948 NaN NaN NaN NaN NaN NaN NaN 155.61 1 150.33 149.83 150.83 -5.2854 0 0 0 0.23508 1 30182 30182 2.4985 0 1 50625 4961;4959;1113 33623 33644 49580 49580 0.09376826979860198 VHVPEGQTI 9 Unmodified _VHVPEGQTI_ 0 0 0 nc|ENSG00000198055|P43250-2|GRK6;nc|ENSG00000198055|P43250-3|GRK6;ENSG00000198055|ENST00000355472|GRK6 nc|ENSG00000198055|P43250-2|GRK6 nc|ENSG00000198055|P43250-2|GRK6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2652282714844 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 39.541 1 37.136 36.636 37.636 -2.4049 0 0 0 0.19657 1 7059 7059 4.897 4.6902 1 50626 12548 33624 33645 49581 49581 0.023328834091557837 VHVRDATL 8 Unmodified _VHVRDATL_ 0 0 0 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2;sp|F5HIG1|HEPA_HCMVMDNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL102PE=3SV=1 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.1663818359375 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 96.383 1 96.383 95.883 96.883 0 0 0 0 0.21486 1 18884 18884 1.4819 0 1 50627 25743 33625 33646 49582 49582 0.044843204745689036 VHVRDATL 8 Unmodified _VHVRDATL_ 0 0 0 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2;sp|F5HIG1|HEPA_HCMVMDNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL102PE=3SV=1 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.1757507324219 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 103.17 1 98.988 98.488 99.488 -4.1861 0 0 0 0.21486 1 20281 20281 3.5965 0 1 50628 25743 33625 33646 49583 49583 0.044843204745689036 VHVRDATL 8 Unmodified _VHVRDATL_ 0 0 0 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2;sp|F5HIG1|HEPA_HCMVMDNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL102PE=3SV=1 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.1756591796875 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 102.59 1 98.266 97.766 98.766 -4.3208 0 0 0 0.21486 1 19642 19642 3.5965 0 1 50629 25743 33625 33646 49584 49584 0.044843204745689036 VHVRDATL 8 Unmodified _VHVRDATL_ 0 0 0 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2;sp|F5HIG1|HEPA_HCMVMDNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL102PE=3SV=1 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.0404052734375 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 62.324 1 59.084 58.584 59.584 -3.2395 0 0 0 0.21486 1 11683 11683 1.6526 0 1 50630 25743 33625 33646 49585 49585 0.044843204745689036 VHVRDATL 8 Unmodified _VHVRDATL_ 0 0 0 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2;sp|F5HIG1|HEPA_HCMVMDNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL102PE=3SV=1 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.1241149902344 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 155.77 1 150.51 150.01 151.01 -5.2526 0 0 0 0.21486 1 30207 30207 1.6526 0 1 50631 25743 33625 33646 49586 49586 0.044843204745689036 VHVRLAKGVEA 11 Unmodified _VHVRLAKGVEA_ 0 0 0 REV__ENSG00000159495|ENST00000452443|TGM7 REV__ENSG00000159495|ENST00000452443|TGM7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 589.85546875 2 589.853847 1177.69314 NaN NaN NaN NaN NaN NaN NaN 11.208 1 11.208 10.708 11.708 0 0 0 0 0.23698 1 1467 1467 0 0 1 + 50632 17375 33626 33647 49587 49587 0.11140187416981462 VHVRLAKGVEA 11 Unmodified _VHVRLAKGVEA_ 0 0 0 REV__ENSG00000159495|ENST00000452443|TGM7 REV__ENSG00000159495|ENST00000452443|TGM7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2651977539062 2 589.853847 1177.69314 NaN NaN NaN NaN NaN NaN NaN 11.218 1 11.218 10.718 11.718 0 0 0 0 0.22632 1 1470 1470 0 0 1 + 50633 17375 33626 33647 49588 49588 0.11140187416981462 VHWVMRGQE 9 Unmodified _VHWVMRGQE_ 0 0 0 REV__ALK|p.R620Mfs*7|1|0.03|ENSG00000171094|chr2:29275455-29275456|-/A|frameshift_variant REV__ALK|p.R620Mfs*7|1|0.03|ENSG00000171094|chr2:29275455-29275456|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2052917480469 3 381.190559 1140.54985 NaN NaN NaN NaN NaN NaN NaN 62 1 62 61.5 62.5 0 0 0 0 0.23508 1 11897 11897 4.897 0.49086 1 + 50634 13012 33627 33648 49589 49589 -0.01480562965775789 VHYLTTVE 8 Unmodified _VHYLTTVE_ 0 0 0 nc|ENSG00000187821|A6NFD8-4|HELT;ENSG00000187821|ENST00000515777|HELT nc|ENSG00000187821|A6NFD8-4|HELT nc|ENSG00000187821|A6NFD8-4|HELT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24444580078125 2 481.2531 960.491647 0.23899 0.00011502 -0.011537 -5.5524E-06 0.22746 0.00010946 481.25311439314635 65.101 1.3335 61.818 61.317 62.65 -3.2832 66 38 2 0 0 0 0.58432 1 12173 12173 23.148 0.41214 1 3279000 50635 7132 33628 33649 49590 49590 0.009820786605473586 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 486.29058837890625 2 485.30821 968.601866 0.15749 7.6431E-05 0.018342 8.9016E-06 0.17583 8.5333E-05 485.3081799398306 142.42 0.86325 137.76 137.34 138.2 -4.656 64 24 3 0 0 0 0.039965 1 28099 28099 86.332 34.917 1 18544000 50636 2060 33629 33650 49591 49591 0.11630923719633302 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 485.30821 968.601866 0.20871 0.00010129 0.059771 2.9007E-05 0.26848 0.0001303 485.3081386943045 142.9 1.0441 137.87 137.37 138.42 -5.0261 0.03304 -3.0337E-05 NaN 86.332 65 29 3 NaN NaN NaN NaN 0 NaN NaN 0 12487000 50637 2060 33629 33650 0.11630923719633302 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 485.30821 968.601866 0.090621 4.3979E-05 0.20531 9.9641E-05 0.29594 0.00014362 485.30826863467144 142.78 0.9592 137.88 137.34 138.3 -4.8982 0.044281 0.00011093 NaN 86.332 65 26 3 NaN NaN NaN NaN 0 NaN NaN 0 12721000 50638 2060 33629 33650 0.11630923719633302 VIANIVVG 8 Unmodified _VIANIVVG_ 0 0 0 ENST00000370689.6_1_1:84701367-84701451:+|nuORF ENST00000370689.6_1_1:84701367-84701451:+|nuORF ENST00000370689.6_1_1:84701367-84701451:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3966674804688 1 784.492716 783.485439 0.64401 0.00050522 -0.99248 -0.00077859 -0.34847 -0.00027337 784.4921381107494 150.15 0.5607 145.42 145.12 145.68 -4.7323 23 15 2 0 0 0 0.64227 1 29836 29836 19.439 1.304 1 3754900 50639 9144 33630 33651 49592 49592 0.08503605219721067 VIAPAHGP 8 Unmodified _VIAPAHGP_ 0 0 0 REV__ENST00000360537.6_1_6:144269499-144285925:-|nuORF REV__ENST00000360537.6_1_6:144269499-144285925:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2186584472656 2 381.218863 760.423173 -0.34169 -0.00013026 0.7087 0.00027017 0.36702 0.00013991 381.21900116265107 57.392 0.60239 54.498 54.166 54.769 -2.8944 34 16 3 0 0 0 8448 1 10976 10976 1.7423 1.1154 1 1798300 + 50640 20783 33631 33652 49593 49593 0.033378788713775975 VIAPNIFRLF 10 Unmodified _VIAPNIFRLF_ 0 0 0 REV__NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant REV__NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 397.576904296875 3 397.241248 1188.70191 NaN NaN NaN NaN NaN NaN NaN 114.02 1 109.55 109.05 110.05 -4.4726 0 0 0 2.8426 1 22468 22468 6.6304 1.7334 1 + 50641 19275 33632 33653 49594 49594 0.11511161053408614 VIASQHCHAV 10 Unmodified _VIASQHCHAV_ 0 0 0 REV__nc|ENSG00000173334|Q96RU8-2|TRIB1 REV__nc|ENSG00000173334|Q96RU8-2|TRIB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2736206054688 2 532.768926 1063.5233 0.090831 4.8392E-05 1.3193 0.00070287 1.4101 0.00075126 532.76989652839 101.07 1.6981 96.91 95.975 97.673 -4.1594 122 48 4 0 0 0 0.59928 1 19756 19756 19.257 2.1441 1 20176000 + 50642 18351 33633 33654 49595 49595 -0.005922518571196633 VICAIKYKKL 10 Unmodified _VICAIKYKKL_ 0 0 0 REV__ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant REV__ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2489013671875 2 589.87012 1177.72569 NaN NaN NaN NaN NaN NaN NaN 172.91 1 168.03 167.53 168.53 -4.881 0 0 0 0.22588 1 34351 34351 6.7232 0.51738 1 + 50643 13816 33634 33655 49596 49596 0.14393258495579175 VIDEQEKNRQN 11 Unmodified _VIDEQEKNRQN_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000001528;REV__nc|ENSG00000205726|Q15811-12|ITSN1 REV__CON__ENSEMBL:ENSBTAP00000001528 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2243957519531 3 458.232028 1371.67426 NaN NaN NaN NaN NaN NaN NaN 31.346 1 31.346 30.846 31.846 0 0 0 0 0.22632 1 5658 5658 0.172 0 1 + + 50644 13503;19600 33635 33656 49597 49597 0.003285612645868241 VIDEVRTGTY 10 Unmodified _VIDEVRTGTY_ 0 0 0 ENST00000548363.1_1_12:49580068-49582762:-|nuORF;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B ENST00000548363.1_1_12:49580068-49582762:-|nuORF ENST00000548363.1_1_12:49580068-49582762:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3119506835938 2 576.798403 1151.58225 0.025212 1.4542E-05 0.21502 0.00012402 0.24023 0.00013857 576.7985040257178 58.017 0.45554 58.017 57.755 58.211 0 26 12 3 0 0 0 0.34808 1 11081 11081 53.317 30.58 1 3818900 50645 3267 33636 33657 49598 49598 0.012525029182143044 VIDEVRTGTY 10 Unmodified _VIDEVRTGTY_ 0 0 0 ENST00000548363.1_1_12:49580068-49582762:-|nuORF;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B ENST00000548363.1_1_12:49580068-49582762:-|nuORF ENST00000548363.1_1_12:49580068-49582762:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32470703125 2 576.798403 1151.58225 0.049611 2.8615E-05 -0.1176 -6.7829E-05 -0.067985 -3.9214E-05 576.7981860837651 61.02 0.44563 58.087 57.891 58.337 -2.9333 25 12 3 0 0 0 0.764 1 11786 11786 23.79 8.9515 1 3300300 50646 3267 33636 33657 49599 49599 0.012525029182143044 VIDEVRTGTY 10 Unmodified _VIDEVRTGTY_ 0 0 0 ENST00000548363.1_1_12:49580068-49582762:-|nuORF;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B ENST00000548363.1_1_12:49580068-49582762:-|nuORF ENST00000548363.1_1_12:49580068-49582762:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3369750976562 2 576.798403 1151.58225 0.22505 0.00012981 -0.17323 -9.9917E-05 0.051824 2.9892E-05 576.7981843703946 61.473 0.49345 58.103 57.863 58.356 -3.3694 25 13 3 0 0 0 0.764 1 11475 11475 29.841 15.002 1 2014200 50647 3267 33636 33657 49600 49600 0.012525029182143044 VIDEVRTGTY 10 Unmodified _VIDEVRTGTY_ 0 0 0 ENST00000548363.1_1_12:49580068-49582762:-|nuORF;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B ENST00000548363.1_1_12:49580068-49582762:-|nuORF ENST00000548363.1_1_12:49580068-49582762:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3385009765625 2 576.798403 1151.58225 0.19342 0.00011156 0.029818 1.7199E-05 0.22323 0.00012876 576.7983388436566 61.335 0.48826 58.095 57.858 58.347 -3.2395 30 13 3 0 0 0 0.764 1 11510 11510 29.841 19.767 1 2617600 50648 3267 33636 33657 49601 49601 0.012525029182143044 VIDISGISVY 10 Unmodified _VIDISGISVY_ 0 0 0 REV__FREM2|p.F2459Lfs*27|1|0.21|ENSG00000150893|chr13:38859443-38859443|T/-|frameshift_variant REV__FREM2|p.F2459Lfs*27|1|0.21|ENSG00000150893|chr13:38859443-38859443|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.26904296875 2 533.294965 1064.57538 -0.11427 -6.0938E-05 0.38387 0.00020471 0.2696 0.00014377 533.2951937500773 94.765 0.48595 94.765 94.522 95.008 0 22 13 2 0 0 0 0.26486 1 18596 18596 39.957 1.9833 1 1668200 + 50649 17045 33637 33658 49602 49602 0.04567190037619184 VIDKESEVY 9 Unmodified _VIDKESEVY_ 0 0 0 PDLIM1|p.K198N|1|0.37|ENSG00000107438|chr10:95247306-95247306|C/A|missense_variant;ENSG00000107438|ENST00000329399|PDLIM1 PDLIM1|p.K198N|1|0.37|ENSG00000107438|chr10:95247306-95247306|C/A|missense_variant PDLIM1|p.K198N|1|0.37|ENSG00000107438|chr10:95247306-95247306|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2740478515625 2 541.274229 1080.53391 0.52487 0.0002841 0.92583 0.00050113 1.4507 0.00078523 541.2737779056622 42.397 0.91266 42.397 41.726 42.639 0 43 25 3 0 0 0 0.010502 4 7938 7883;7886;7934;7938 103.42 46.878 1 5351900 50650 2424 33638 33659 49603;49604;49605;49606 49606 -0.0031399072170188447 VIDKESEVY 9 Unmodified _VIDKESEVY_ 0 0 0 PDLIM1|p.K198N|1|0.37|ENSG00000107438|chr10:95247306-95247306|C/A|missense_variant;ENSG00000107438|ENST00000329399|PDLIM1 PDLIM1|p.K198N|1|0.37|ENSG00000107438|chr10:95247306-95247306|C/A|missense_variant PDLIM1|p.K198N|1|0.37|ENSG00000107438|chr10:95247306-95247306|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2739868164062 2 541.274229 1080.53391 0.20598 0.00011149 -0.31848 -0.00017239 -0.1125 -6.0895E-05 541.2740566427183 45.387 0.60071 42.574 42.325 42.926 -2.813 36 16 3 0 0 0 0.010502 3 8565 8561;8565;8585 103.42 49.587 1 6730100 50651 2424 33638 33659 49607;49608;49609 49608 -0.0031399072170188447 VIDKESEVY 9 Unmodified _VIDKESEVY_ 0 0 0 PDLIM1|p.K198N|1|0.37|ENSG00000107438|chr10:95247306-95247306|C/A|missense_variant;ENSG00000107438|ENST00000329399|PDLIM1 PDLIM1|p.K198N|1|0.37|ENSG00000107438|chr10:95247306-95247306|C/A|missense_variant PDLIM1|p.K198N|1|0.37|ENSG00000107438|chr10:95247306-95247306|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2742919921875 2 541.274229 1080.53391 0.042906 2.3224E-05 -0.1305 -7.0634E-05 -0.087591 -4.7411E-05 541.2741548926248 45.436 0.7034 42.571 42.162 42.866 -2.8653 45 19 3 0 0 0 0.010502 2 8244 8244;8290 103.42 49.587 1 6511300 50652 2424 33638 33659 49610;49611 49610 -0.0031399072170188447 VIDKESEVY 9 Unmodified _VIDKESEVY_ 0 0 0 PDLIM1|p.K198N|1|0.37|ENSG00000107438|chr10:95247306-95247306|C/A|missense_variant;ENSG00000107438|ENST00000329399|PDLIM1 PDLIM1|p.K198N|1|0.37|ENSG00000107438|chr10:95247306-95247306|C/A|missense_variant PDLIM1|p.K198N|1|0.37|ENSG00000107438|chr10:95247306-95247306|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.265625 2 541.274229 1080.53391 -0.022415 -1.2133E-05 -0.19447 -0.00010526 -0.21689 -0.0001174 541.2741342055161 45.421 0.49136 42.554 42.327 42.818 -2.8666 37 13 4 0 0 0 0.010502 3 8234 8234;8262;8282 103.42 49.587 1 4244900 50653 2424 33638 33659 49612;49613;49614 49612 -0.0031399072170188447 VIDRTVSLY 9 Unmodified _VIDRTVSLY_ 0 0 0 nc|ENSG00000180347|Q6ZRS4-2|ITPRID1;ENSG00000180347|ENST00000615280|ITPRID1;nc|ENSG00000180347|Q6ZRS4-4|ITPRID1 nc|ENSG00000180347|Q6ZRS4-2|ITPRID1 nc|ENSG00000180347|Q6ZRS4-2|ITPRID1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.269775390625 2 533.300581 1064.58661 0.62823 0.00033504 -0.6034 -0.00032179 0.024837 1.3246E-05 533.3001970891821 126.63 0.80061 121.83 121.43 122.23 -4.7958 72 22 4 0 0 0 0.54076 1 24362 24362 26.884 2.8631 1 36296000 50654 6670 33639 33660 49615 49615 0.056900121317767116 VIDYGHASKY 10 Unmodified _VIDYGHASKY_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.A1154Qfs*28|1|0.42|ENSG00000075292|chr2:71422969-71422969|A/-|frameshift_variant;ZNF638|p.K292Dfs*14|1|0.07|ENSG00000075292|chr2:71349827-71349828|CA/-|frameshift_variant;ZNF638|p.K640Tfs*45|1|0.04|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant;nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3184204101562 2 576.787838 1151.56112 NaN NaN NaN NaN NaN NaN NaN 38.142 1 38.142 37.642 38.642 0 0 0 0 0.22588 1 7067 7067 13.042 0.80181 1 50655 1515 33640 33661 49616 49616 -0.008594623906674315 VIDYGHASKY 10 Unmodified _VIDYGHASKY_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.A1154Qfs*28|1|0.42|ENSG00000075292|chr2:71422969-71422969|A/-|frameshift_variant;ZNF638|p.K292Dfs*14|1|0.07|ENSG00000075292|chr2:71349827-71349828|CA/-|frameshift_variant;ZNF638|p.K640Tfs*45|1|0.04|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant;nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3363647460938 2 576.787838 1151.56112 NaN NaN NaN NaN NaN NaN NaN 38.207 1 38.207 37.707 38.707 0 0 0 0 0.22535 1 7081 7081 20.415 1.1575 1 50656 1515 33640 33661 49617 49617 -0.008594623906674315 VIEEFTRKG 9 Unmodified _VIEEFTRKG_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20208740234375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 125.21 1 120.61 120.11 121.11 -4.5984 0 0 0 0.23508 1 24687 24687 1.1933 0.12188 1 50657 3137 33641 33662 49618 49618 0.046171279889904326 VIEEPAIVQP 10 Unmodified _VIEEPAIVQP_ 0 0 0 REV__FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant REV__FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.77978515625 2 547.808239 1093.60193 NaN NaN NaN NaN NaN NaN NaN 166.26 1 161.31 160.81 161.81 -4.9484 0 0 0 0.22576 1 32560 32560 14.838 2.3067 1 + 50658 15927 33642 33663 49619 49619 0.058868789289590495 VIEGNKFV 8 Unmodified _VIEGNKFV_ 0 0 0 REV__tr|U7T0I8|U7T0I8_FUSNUThioredoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00836PE=3SV=1 REV__tr|U7T0I8|U7T0I8_FUSNUThioredoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00836PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7591552734375 2 453.258185 904.501818 0.33452 0.00015162 -1.3998 -0.00063447 -1.0653 -0.00048285 453.2576582365304 97.795 0.33949 97.795 97.573 97.913 0 11 9 2 0 0 0 0.50387 1 19157 19157 34.102 9.4286 1 773240 + 50659 25274 33643 33664 49620 49620 0.04574686385808491 VIEKIDELK 9 Unmodified _VIEKIDELK_ 0 0 0 REV__tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1 REV__tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.783203125 2 543.823889 1085.63323 0.40525 0.00022038 -0.4645 -0.0002526 -0.059248 -3.2221E-05 543.8238001229732 146.67 1.0883 141.67 140.98 142.07 -5 63 30 3 0 0 0 0.35556 1 28281 28281 12.241 0 1 10282000 + 50660 25141 33644 33665 49621 49621 0.09383451963003608 VIFEVMLDL 9 Unmodified _VIFEVMLDL_ 0 0 0 REV__ENSG00000120029|ENST00000370033|ARMH3 REV__ENSG00000120029|ENST00000370033|ARMH3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201416015625 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 118.32 1 113.81 113.31 114.31 -4.502 0 0 0 0.23508 1 23328 23328 12.241 4.0851 1 + 50661 15606 33645 33666 49622 49622 0.04233322170921383 VIFEVMLDL 9 Unmodified _VIFEVMLDL_ 0 0 0 REV__ENSG00000120029|ENST00000370033|ARMH3 REV__ENSG00000120029|ENST00000370033|ARMH3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013244628906 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 119.01 1 114.51 114.01 115.01 -4.502 0 0 0 0.23508 1 23469 23469 2.4985 0.75621 1 + 50662 15606 33645 33666 49623 49623 0.04233322170921383 VIFEVMLDL 9 Unmodified _VIFEVMLDL_ 0 0 0 REV__ENSG00000120029|ENST00000370033|ARMH3 REV__ENSG00000120029|ENST00000370033|ARMH3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015380859375 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 139.61 1 134.97 134.47 135.47 -4.6439 0 0 0 0.23508 1 27562 27562 2.4985 0.21571 1 + 50663 15606 33645 33666 49624 49624 0.04233322170921383 VIFEVMLDL 9 Unmodified _VIFEVMLDL_ 0 0 0 REV__ENSG00000120029|ENST00000370033|ARMH3 REV__ENSG00000120029|ENST00000370033|ARMH3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201416015625 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 117.66 1 113.26 112.76 113.76 -4.4088 0 0 0 0.23508 1 22646 22646 2.4985 1.0166 1 + 50664 15606 33645 33666 49625 49625 0.04233322170921383 VIFEVMLDL 9 Unmodified _VIFEVMLDL_ 0 0 0 REV__ENSG00000120029|ENST00000370033|ARMH3 REV__ENSG00000120029|ENST00000370033|ARMH3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20135498046875 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 127.46 1 122.76 122.26 123.26 -4.6998 0 0 0 0.23508 1 24519 24519 4.897 0.36815 1 + 50665 15606 33645 33666 49626 49626 0.04233322170921383 VIFEVMLDL 9 Unmodified _VIFEVMLDL_ 0 0 0 REV__ENSG00000120029|ENST00000370033|ARMH3 REV__ENSG00000120029|ENST00000370033|ARMH3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2014465332031 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 128.34 1 123.59 123.09 124.09 -4.7408 0 0 0 0.23508 1 24693 24693 0.96228 0.0979 1 + 50666 15606 33645 33666 49627 49627 0.04233322170921383 VIFEVMLDL 9 Unmodified _VIFEVMLDL_ 0 0 0 REV__ENSG00000120029|ENST00000370033|ARMH3 REV__ENSG00000120029|ENST00000370033|ARMH3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013244628906 3 360.19995 1077.57802 NaN NaN NaN NaN NaN NaN NaN 171.06 1 166.19 165.69 166.69 -4.873 0 0 0 0.23508 1 33887 33887 0.96228 0.56156 1 + 50667 15606 33645 33666 49628 49628 0.04233322170921383 VIFFMPLI 8 Unmodified _VIFFMPLI_ 0 0 0 REV__ENSG00000117834|ENST00000438567|SLC5A9 REV__ENSG00000117834|ENST00000438567|SLC5A9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2764587402344 2 490.2879 978.561247 -0.019265 -9.4455E-06 -1.1136 -0.00054601 -1.1329 -0.00055545 490.28714880805177 71.387 0.45816 68.138 67.886 68.345 -3.2492 22 12 2 0 0 0 0.23703 2 13919 13919;13942 41.817 14.188 1 1987100 + 50668 15531 33646 33667 49629;49630 49629 0.07110866075640843 VIFFMPLI 8 Unmodified _VIFFMPLI_ 0 0 0 REV__ENSG00000117834|ENST00000438567|SLC5A9 REV__ENSG00000117834|ENST00000438567|SLC5A9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2703857421875 2 490.2879 978.561247 NaN NaN NaN NaN NaN NaN NaN 71.661 1 68.412 67.912 68.912 -3.2492 0 0 0 0.21486 1 13957 13957 11.114 1.767 1 + 50669 15531 33646 33667 49631 49631 0.07110866075640843 VIFFQAAQY 9 Unmodified _VIFFQAAQY_ 0 0 0 MSANTD4|p.S33Ffs*9|1|0.09|ENSG00000170903|chr11:106010820-106010821|-/A|frameshift_variant MSANTD4|p.S33Ffs*9|1|0.09|ENSG00000170903|chr11:106010820-106010821|-/A|frameshift_variant MSANTD4|p.S33Ffs*9|1|0.09|ENSG00000170903|chr11:106010820-106010821|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7838134765625 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 152.83 1 147.61 147.11 148.11 -5.2209 0 0 0 0.23508 1 29621 29621 8.5933 1.8701 1 50670 12163 33647 33668 49632 49632 0.01522644448596111 VIGGHLGP 8 Unmodified _VIGGHLGP_ 0 0 0 REV__nc|ENSG00000136068|O75369-7|FLNB REV__nc|ENSG00000136068|O75369-7|FLNB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2187805175781 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 57.392 1 54.14 53.64 54.64 -3.2517 0 0 0 0.23294 1 10654 10654 1.7423 0 1 + 50671 16311 33648 33669 49633 49633 0.038898788713822796 VIGSSLGS 8 Unmodified _VIGSSLGS_ 0 0 0 ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant;ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant;ENSG00000171940|ENST00000371471|ZNF217 ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2010803222656 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 147.32 1 142.32 141.82 142.82 -5 0 0 0 0.21486 1 28518 28518 5.7604 0 1 50672 6186 33649 33670 49634 49634 0.01566162534970772 VIHHKPLRS 9 Unmodified _VIHHKPLRS_ 0 0 0 ENSG00000114790|ENST00000465093|ARHGEF26;nc|ENSG00000114790|Q96DR7-3|ARHGEF26;ARHGEF26|p.T596Nfs*3|1|0.29|ENSG00000114790|chr3:154194653-154194654|-/A|frameshift_variant;nc|ENSG00000114790|Q96DR7-4|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7760620117188 2 543.830175 1085.6458 NaN NaN NaN NaN NaN NaN NaN 140.72 1 140.72 140.22 141.22 0 0 0 0 0.23508 1 28022 28022 12.241 3.4953 1 50673 2811 33650 33671 49635 49635 0.10639952936594455 VIHKLRTL 8 Unmodified _VIHKLRTL_ 0 0 0 REV__FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant REV__FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2650146484375 2 490.324194 978.633835 NaN NaN NaN NaN NaN NaN NaN 176.55 1 176.55 176.05 177.05 0 0 0 0 0.21486 1 36574 36574 0.69038 0 1 + 50674 16787 33651 33672 49636 49636 0.14366336193427287 VIICFFVQLA 10 Unmodified _VIICFFVQLA_ 0 0 0 ENST00000482846.1_1_15:63447754-63448774:-|nuORF ENST00000482846.1_1_15:63447754-63448774:-|nuORF ENST00000482846.1_1_15:63447754-63448774:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3282470703125 2 576.827921 1151.64129 0.28427 0.00016398 0.36991 0.00021337 0.65418 0.00037735 577.3289431934463 156.3 0.2399 151.02 150.93 151.17 -5.2854 9 6 2 0 0 0 1.133 1 30305 30305 0.13989 0.13651 1 888350 50675 10404 33652 33673 49637 49637 0.07153307678822785 VIIEKTYSL 9 Unmodified _VIIEKTYSL_ 0 0 0 PATL1|p.T522P|1|0.25|ENSG00000166889|chr11:59650774-59650774|T/G|missense_variant;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 PATL1|p.T522P|1|0.25|ENSG00000166889|chr11:59650774-59650774|T/G|missense_variant PATL1|p.T522P|1|0.25|ENSG00000166889|chr11:59650774-59650774|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2694091796875 2 533.313158 1064.61176 -0.092868 -4.9528E-05 0.28347 0.00015118 0.1906 0.00010165 533.3131285335955 104.15 0.67738 99.931 99.552 100.23 -4.2183 27 16 3 0 0 0 0.40905 1 20511 20511 21.537 0 1 2826000 50676 5761 33653 33674 49638 49638 0.08204066934331422 VIIEKTYSL 9 Unmodified _VIIEKTYSL_ 0 0 0 PATL1|p.T522P|1|0.25|ENSG00000166889|chr11:59650774-59650774|T/G|missense_variant;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 PATL1|p.T522P|1|0.25|ENSG00000166889|chr11:59650774-59650774|T/G|missense_variant PATL1|p.T522P|1|0.25|ENSG00000166889|chr11:59650774-59650774|T/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2619018554688 2 533.313158 1064.61176 0.74036 0.00039484 -0.72352 -0.00038586 0.016833 8.977E-06 533.3128036622182 104 0.57024 99.943 99.698 100.27 -4.0543 25 15 2 0 0 0 0.73268 1 19961 19961 18.146 2.2992 1 1446200 50677 5761 33653 33674 49639 49639 0.08204066934331422 VIIHWNAC 8 Unmodified _VIIHWNAC_ 0 0 0 ENSG00000183862|ENST00000329903|CNGA2;CNGA2|p.K435Sfs*6|1|0.06|ENSG00000183862|chrX:151743806-151743806|A/-|frameshift_variant ENSG00000183862|ENST00000329903|CNGA2 ENSG00000183862|ENST00000329903|CNGA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 319.210693359375 3 319.165462 954.474557 -0.063993 -2.0424E-05 -0.19886 -6.3469E-05 -0.26285 -8.3893E-05 319.16517815972014 107.84 0.20403 103.43 103.27 103.47 -4.4121 6 5 2 0 0 0 0.88047 1 20678 20678 0.45834 0 1 374690 50678 6876 33654 33675 49640 49640 -0.004501204262396641 VIILPKKHKK 10 Unmodified _VIILPKKHKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF;ENST00000475423.1_1_X:153991228-153993352:+|nuORF ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2780151367188 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 33.846 1 33.846 33.346 34.346 0 0 0 0 2.8426 1 6188 6188 0 0 1 50679 3644 33655 33676 49641 49641 0.2293998876684782 VIILPKKHKK 10 Unmodified _VIILPKKHKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF;ENST00000475423.1_1_X:153991228-153993352:+|nuORF ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2780151367188 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 33.858 1 33.858 33.358 34.358 0 0 0 0 0.22588 1 6190 6190 0 0 1 50680 3644 33655 33676 49642 49642 0.2293998876684782 VIILPKKHKK 10 Unmodified _VIILPKKHKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF;ENST00000475423.1_1_X:153991228-153993352:+|nuORF ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2817993164062 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 156.69 1 151.9 151.4 152.4 -4.7885 0 0 0 2.8426 1 31159 31159 0 0 1 50681 3644 33655 33676 49643 49643 0.2293998876684782 VIILPKKHKK 10 Unmodified _VIILPKKHKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF;ENST00000475423.1_1_X:153991228-153993352:+|nuORF ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2871704101562 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 118.61 1 114 113.5 114.5 -4.6106 0 0 0 2.8426 1 22759 22759 0 0 1 50682 3644 33655 33676 49644 49644 0.2293998876684782 VIILPKKHKK 10 Unmodified _VIILPKKHKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF;ENST00000475423.1_1_X:153991228-153993352:+|nuORF ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2938842773438 2 602.418626 1202.8227 NaN NaN NaN NaN NaN NaN NaN 132.83 1 127.98 127.48 128.48 -4.8527 0 0 0 2.8426 1 25516 25516 0 0 1 50683 3644 33655 33676 49645 49645 0.2293998876684782 VIILPKKHKK 10 Unmodified _VIILPKKHKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF;ENST00000475423.1_1_X:153991228-153993352:+|nuORF ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2928466796875 2 602.418626 1202.8227 0.44773 0.00026972 -3.1441 -0.0018941 -2.6963 -0.0016243 602.9163299460571 151.76 0.17747 146.59 146.49 146.66 -5.1759 6 4 2 0 0 0 1.1333 1 29403 29403 0.0013812 0 1 1837300 50684 3644 33655 33676 49646 49646 0.2293998876684782 VIILRRVLL 9 Unmodified _VIILRRVLL_ 0 0 0 ENST00000369502.1_1_1:116574085-116574238:+|nuORF ENST00000369502.1_1_1:116574085-116574238:+|nuORF ENST00000369502.1_1_1:116574085-116574238:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.779052734375 2 547.892244 1093.76993 0.33265 0.00018226 -2.9043 -0.0015912 -2.5716 -0.001409 548.3922577614773 147.08 0.24789 147.08 146.94 147.19 0 8 6 2 0 0 0 0.88433 1 29403 29403 0 0 1 1559200 50685 9122 33656 33677 49647 49647 0.2268003070407758 VIKASIAID 9 Unmodified _VIKASIAID_ 0 0 0 ENST00000436372.1_1_X:70535119-70535567:-|nuORF;ZCRB1|p.K141Efs*4|1|0.29|ENSG00000139168|chr12:42313900-42313901|-/T|frameshift_variant;ZCRB1|p.W185Mfs*13|2|0.39|ENSG00000139168|chr12:42313168-42313169|-/T|frameshift_variant;ENSG00000139168|ENST00000266529|ZCRB1 ENST00000436372.1_1_X:70535119-70535567:-|nuORF ENST00000436372.1_1_X:70535119-70535567:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25152587890625 2 465.286943 928.559333 0.20208 9.4024E-05 -0.35674 -0.00016599 -0.15467 -7.1964E-05 465.28669404139066 97.644 0.33784 97.644 97.507 97.844 0 11 9 2 0 0 0 0.45972 1 19176 19176 8.1555 0 1 704140 50686 4227 33657 33678 49648 49648 0.09219528591347625 VIKIIKKS 8 Unmodified _VIKIIKKS_ 0 0 0 REV__ENST00000377461.8_1_19:48734941-48735010:-|nuORF REV__ENST00000377461.8_1_19:48734941-48735010:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2375183105469 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 85.138 1 81.229 80.729 81.729 -3.9093 0 0 0 0.21486 1 16190 16190 0.35063 0 1 + 50687 21098 33658 33679 49649 49649 0.18136988621699857 VIKIIKKS 8 Unmodified _VIKIIKKS_ 0 0 0 REV__ENST00000377461.8_1_19:48734941-48735010:-|nuORF REV__ENST00000377461.8_1_19:48734941-48735010:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.23065185546875 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 84.209 1 80.497 79.997 80.997 -3.7117 0 0 0 0.21486 1 16081 16081 0.35063 0 1 + 50688 21098 33658 33679 49650 49650 0.18136988621699857 VIKKIKIS 8 Unmodified _VIKKIKIS_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3;nc|ENSG00000120500|P36575-2|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2218933105469 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 107.84 1 107.84 107.34 108.34 0 0 0 0 0.21486 1 21204 21204 0.40072 0 1 50689 3137 33659 33680 49651 49651 0.18136988621688488 VIKKIKIS 8 Unmodified _VIKKIKIS_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3;nc|ENSG00000120500|P36575-2|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1644287109375 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 130.11 1 130.11 129.61 130.61 0 0 0 0 0.2386 1 25710 25710 0.12286 0 1 50690 3137 33659 33680 49652 49652 0.18136988621688488 VIKKIKIS 8 Unmodified _VIKKIKIS_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3;nc|ENSG00000120500|P36575-2|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2225036621094 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 130.21 1 130.21 129.71 130.71 0 0 0 0 0.21486 1 25732 25732 0.40072 0 1 50691 3137 33659 33680 49653 49653 0.18136988621688488 VIKKIKIS 8 Unmodified _VIKKIKIS_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3;nc|ENSG00000120500|P36575-2|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2225646972656 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 109.34 1 104.97 104.47 105.47 -4.3776 0 0 0 0.21486 1 21550 21550 0.40072 0 1 50692 3137 33659 33680 49654 49654 0.18136988621688488 VIKKIKIS 8 Unmodified _VIKKIKIS_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3;nc|ENSG00000120500|P36575-2|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.22216796875 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 112.82 1 108.37 107.87 108.87 -4.4539 0 0 0 0.21486 1 22232 22232 0.40072 0 1 50693 3137 33659 33680 49655 49655 0.18136988621688488 VIKKIKIS 8 Unmodified _VIKKIKIS_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3;nc|ENSG00000120500|P36575-2|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.23077392578125 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 133.68 1 129.04 128.54 129.54 -4.6399 0 0 0 0.21486 1 26361 26361 0.40072 0 1 50694 3137 33659 33680 49656 49656 0.18136988621688488 VIKKIKIS 8 Unmodified _VIKKIKIS_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3;nc|ENSG00000120500|P36575-2|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1646728515625 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 136.28 1 131.64 131.14 132.14 -4.6399 0 0 0 0.2396 1 26890 26890 0.12286 0 1 50695 3137 33659 33680 49657 49657 0.18136988621688488 VIKKIKIS 8 Unmodified _VIKKIKIS_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3;nc|ENSG00000120500|P36575-2|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16455078125 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 36.476 1 34.138 33.638 34.638 -2.3375 0 0 0 0.2396 1 6437 6437 0 0 1 50696 3137 33659 33680 49658 49658 0.18136988621688488 VIKKIKIS 8 Unmodified _VIKKIKIS_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3;nc|ENSG00000120500|P36575-2|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2302551269531 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 111.45 1 107.22 106.72 107.72 -4.2289 0 0 0 0.21486 1 21453 21453 0.40072 0 1 50697 3137 33659 33680 49659 49659 0.18136988621688488 VIKKIKIS 8 Unmodified _VIKKIKIS_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3;nc|ENSG00000120500|P36575-2|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.22186279296875 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 111.66 1 107.43 106.93 107.93 -4.2289 0 0 0 0.21486 1 21496 21496 0.40072 0 1 50698 3137 33659 33680 49660 49660 0.18136988621688488 VIKKIKIS 8 Unmodified _VIKKIKIS_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3;nc|ENSG00000120500|P36575-2|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.22271728515625 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 134.3 1 129.48 128.98 129.98 -4.8175 0 0 0 0.21486 1 25857 25857 1.6526 0 1 50699 3137 33659 33680 49661 49661 0.18136988621688488 VIKPVLPKL 9 Unmodified _VIKPVLPKL_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.S411Hfs*12|1|0.06|ENSG00000059588|chr1:234467519-234467519|A/-|frameshift_variant ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.2382507324219 3 336.238956 1005.69504 NaN NaN NaN NaN NaN NaN NaN 57.162 1 57.162 56.662 57.662 0 0 0 0 0.23508 1 10925 10925 0 0 1 50700 1299 33660 33681 49662 49662 0.19241848172828213 VIKPVLPKL 9 Unmodified _VIKPVLPKL_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.S411Hfs*12|1|0.06|ENSG00000059588|chr1:234467519-234467519|A/-|frameshift_variant ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.217041015625 3 336.238956 1005.69504 NaN NaN NaN NaN NaN NaN NaN 57.379 1 57.379 56.879 57.879 0 0 0 0 0.23508 1 10968 10968 0 0 1 50701 1299 33660 33681 49663 49663 0.19241848172828213 VIKPVLPKL 9 Unmodified _VIKPVLPKL_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.S411Hfs*12|1|0.06|ENSG00000059588|chr1:234467519-234467519|A/-|frameshift_variant ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.23828125 3 336.238956 1005.69504 NaN NaN NaN NaN NaN NaN NaN 57.694 1 57.694 57.194 58.194 0 0 0 0 0.23508 1 11035 11035 0 0 1 50702 1299 33660 33681 49664 49664 0.19241848172828213 VIKPVLPKL 9 Unmodified _VIKPVLPKL_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.S411Hfs*12|1|0.06|ENSG00000059588|chr1:234467519-234467519|A/-|frameshift_variant ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.23797607421875 3 336.238956 1005.69504 NaN NaN NaN NaN NaN NaN NaN 5.9809 1 5.3546 4.8546 5.8546 -0.62626 0 0 0 0.23508 1 390 390 0 0 1 50703 1299 33660 33681 49665 49665 0.19241848172828213 VIKPVLPKL 9 Unmodified _VIKPVLPKL_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.S411Hfs*12|1|0.06|ENSG00000059588|chr1:234467519-234467519|A/-|frameshift_variant ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.1455078125 3 336.238956 1005.69504 NaN NaN NaN NaN NaN NaN NaN 59.06 1 55.769 55.269 56.269 -3.291 0 0 0 0.23508 1 10984 10984 0 0 1 50704 1299 33660 33681 49666 49666 0.19241848172828213 VIKPVLPKL 9 Unmodified _VIKPVLPKL_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.S411Hfs*12|1|0.06|ENSG00000059588|chr1:234467519-234467519|A/-|frameshift_variant ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.21746826171875 3 336.238956 1005.69504 NaN NaN NaN NaN NaN NaN NaN 59.524 1 56.21 55.71 56.71 -3.3139 0 0 0 0.23508 1 11069 11069 0 0 1 50705 1299 33660 33681 49667 49667 0.19241848172828213 VIKRVVLS 8 Unmodified _VIKRVVLS_ 0 0 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 305.1954650878906 3 305.211289 912.612037 NaN NaN NaN NaN NaN NaN NaN 22.971 1 21.517 21.017 22.017 -1.4535 0 0 0 0.2396 1 3685 3685 0.12286 0 1 50706 5840 33661 33682 49668 49668 0.1522353144483759 VIKTPVVK 8 Unmodified _VIKTPVVK_ 0 0 0 nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 442.3006591796875 2 442.302396 882.590239 NaN NaN NaN NaN NaN NaN NaN 179.32 1 179.32 178.82 179.82 0 0 0 0 0.21486 1 37146 37146 0.52476 0 1 50707 3802 33662 33683 49669 49669 0.14424726696267953 VIKTPVVK 8 Unmodified _VIKTPVVK_ 0 0 0 nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 442.3009338378906 2 442.302396 882.590239 NaN NaN NaN NaN NaN NaN NaN 6.865 1 6.1859 5.6859 6.6859 -0.67913 0 0 0 0.21486 1 563 563 0.52476 0 1 50708 3802 33662 33683 49670 49670 0.14424726696267953 VIKTPVVK 8 Unmodified _VIKTPVVK_ 0 0 0 nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 442.3006896972656 2 442.302396 882.590239 NaN NaN NaN NaN NaN NaN NaN 7.2868 1 6.6076 6.1076 7.1076 -0.67913 0 0 0 0.21486 1 647 647 0.52476 0 1 50709 3802 33662 33683 49671 49671 0.14424726696267953 VILDPVHSV 9 Unmodified _VILDPVHSV_ 0 0 0 nc|ENSG00000224831|Q1AE95|TMEM183BP;ENSG00000163444|ENST00000367242|TMEM183A nc|ENSG00000224831|Q1AE95|TMEM183BP nc|ENSG00000224831|Q1AE95|TMEM183BP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.264892578125 2 489.784567 977.554582 0.030686 1.503E-05 1.0998 0.00053867 1.1305 0.0005537 489.78474598954415 107.87 0.48859 103.45 103.16 103.65 -4.4121 16 13 2 0 0 0 0.42289 1 20684 20684 39.957 5.5556 1 785210 50710 5428 33663 33684 49672 49672 0.06490644448615512 VILEVQETY 9 Unmodified _VILEVQETY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7716674804688 2 547.292422 1092.57029 -0.060137 -3.2912E-05 2.0257 0.0011087 1.9656 0.0010757 547.2926443142835 105.15 0.8105 100.93 100.47 101.28 -4.2183 40 22 3 0 0 0 0.23492 1 20701 20701 38.176 20.029 1 3708600 50711 3487 33664 33685 49673 49673 0.0277088617501704 VILGHSER 8 Unmodified _VILGHSER_ 0 0 0 tr|U7SL68|U7SL68_FUSNUTriosephosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tpiAPE=3SV=1 tr|U7SL68|U7SL68_FUSNUTriosephosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tpiAPE=3SV=1 tr|U7SL68|U7SL68_FUSNUTriosephosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tpiAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.0390625 3 304.175015 909.503215 NaN NaN NaN NaN NaN NaN NaN 30.617 1 28.543 28.043 29.043 -2.0743 0 0 0 0.21486 1 5249 5249 1.6526 0 1 50712 25979 33665 33686 49674 49674 0.044843204745689036 VILGYQSSL 9 Unmodified _VILGYQSSL_ 0 0 0 REV__ENSG00000163982|ENST00000296358|OTOP1 REV__ENSG00000163982|ENST00000296358|OTOP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2669677734375 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 151.49 1 146.32 145.82 146.82 -5.1759 0 0 0 0.20699 1 29362 29362 21.537 2.28 1 + 50713 17634 33666 33687 49675 49675 0.04846938211710494 VILIKKKYKK 10 Unmodified _VILIKKKYKK_ 0 0 0 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.763671875 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 69.169 1 69.169 68.669 69.669 0 0 0 0 2.8426 1 13386 13386 0 0 1 + 50714 25440 33667 33688 49676 49676 0.2497742859814025 VILIKKKYKK 10 Unmodified _VILIKKKYKK_ 0 0 0 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.75146484375 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 73.977 1 73.977 73.477 74.477 0 0 0 0 0.22588 1 14357 14357 1.6526 0 1 + 50715 25440 33667 33688 49677 49677 0.2497742859814025 VILIKKKYKK 10 Unmodified _VILIKKKYKK_ 0 0 0 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7576293945312 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 74.48 1 74.48 73.98 74.98 0 0 0 0 2.8426 1 14461 14461 0 0 1 + 50716 25440 33667 33688 49678 49678 0.2497742859814025 VILIKKKYKK 10 Unmodified _VILIKKKYKK_ 0 0 0 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7557983398438 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 80.058 1 80.058 79.558 80.558 0 0 0 0 2.8426 1 15585 15585 0 0 1 + 50717 25440 33667 33688 49679 49679 0.2497742859814025 VILIKKKYKK 10 Unmodified _VILIKKKYKK_ 0 0 0 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7557983398438 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 80.07 1 80.07 79.57 80.57 0 0 0 0 0.22588 1 15587 15587 1.6526 0 1 + 50718 25440 33667 33688 49680 49680 0.2497742859814025 VILIKKKYKK 10 Unmodified _VILIKKKYKK_ 0 0 0 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7662353515625 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 77.211 1 73.747 73.247 74.247 -3.4633 0 0 0 2.8426 1 15071 15071 0 0 1 + 50719 25440 33667 33688 49681 49681 0.2497742859814025 VILIKKKYKK 10 Unmodified _VILIKKKYKK_ 0 0 0 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.770751953125 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 153.07 1 148.3 147.8 148.8 -4.7684 0 0 0 2.8426 1 30415 30415 0 0 1 + 50720 25440 33667 33688 49682 49682 0.2497742859814025 VILIKKKYKK 10 Unmodified _VILIKKKYKK_ 0 0 0 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7672729492188 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 83.219 1 79.345 78.845 79.845 -3.8736 0 0 0 2.8426 1 15805 15805 0 0 1 + 50721 25440 33667 33688 49683 49683 0.2497742859814025 VILIKKKYKK 10 Unmodified _VILIKKKYKK_ 0 0 0 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 REV__tr|U7T672|U7T672_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00133PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.763916015625 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 73.948 1 70.354 69.854 70.854 -3.594 0 0 0 2.8426 1 14038 14038 0 0 1 + 50722 25440 33667 33688 49684 49684 0.2497742859814025 VILIVKKRYI 10 Unmodified _VILIVKKRYI_ 0 0 0 ENST00000531050.5_1_6:128321419-128718758:-|nuORF ENST00000531050.5_1_6:128321419-128718758:-|nuORF ENST00000531050.5_1_6:128321419-128718758:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7742919921875 2 622.926283 1243.83801 NaN NaN NaN NaN NaN NaN NaN 136.42 1 131.58 131.08 132.08 -4.8307 0 0 0 2.8426 1 26267 26267 0.0013812 0 1 50723 10962 33668 33689 49685 49685 0.22584855564082318 VILKPKKLPKP 11 Unmodified _VILKPKKLPKP_ 0 0 0 ENST00000596242.5_1_19:4325153-4327208:-|nuORF;ENST00000602007.5_1_19:4325153-4327375:-|nuORF;ENSG00000178078|ENST00000594605|STAP2;nc|ENSG00000178078|Q9UGK3-2|STAP2 ENST00000596242.5_1_19:4325153-4327208:-|nuORF ENST00000596242.5_1_19:4325153-4327208:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7593994140625 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 75.847 1 75.847 75.347 76.347 0 0 0 0 0.22632 1 14737 14737 0.094841 0.094841 1 50724 6555 33669 33690 49686 49686 0.24977428598162987 VILKPLLKDI 10 Unmodified _VILKPLLKDI_ 0 0 0 REV__CHD6|p.A797V|1|0.34|ENSG00000124177|chr20:41483387-41483387|G/A|missense_variant REV__CHD6|p.A797V|1|0.34|ENSG00000124177|chr20:41483387-41483387|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3273315429688 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 124.43 1 119.85 119.35 120.35 -4.5757 0 0 0 2.8426 1 24537 24537 0.0013812 0 1 + 50725 13402 33670 33691 49687 49687 0.19957771544522984 VILKPLLKDI 10 Unmodified _VILKPLLKDI_ 0 0 0 REV__CHD6|p.A797V|1|0.34|ENSG00000124177|chr20:41483387-41483387|G/A|missense_variant REV__CHD6|p.A797V|1|0.34|ENSG00000124177|chr20:41483387-41483387|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3175048828125 2 576.391742 1150.76893 NaN NaN NaN NaN NaN NaN NaN 115.37 1 111.05 110.55 111.55 -4.3136 0 0 0 2.8426 1 22210 22210 0.0013812 0 1 + 50726 13402 33670 33691 49688 49688 0.19957771544522984 VILLLALRLR 10 Unmodified _VILLLALRLR_ 0 0 0 nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12 nc|ENSG00000253159|O60330-2|PCDHGA12 nc|ENSG00000253159|O60330-2|PCDHGA12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2672119140625 2 590.418626 1178.8227 NaN NaN NaN NaN NaN NaN NaN 121.7 1 121.7 121.2 122.2 0 0 0 0 2.8426 1 23992 23992 0 0 1 50727 7911 33671 33692 49689 49689 0.24043988766857183 VILLLALRLR 10 Unmodified _VILLLALRLR_ 0 0 0 nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12 nc|ENSG00000253159|O60330-2|PCDHGA12 nc|ENSG00000253159|O60330-2|PCDHGA12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.255859375 2 590.418626 1178.8227 NaN NaN NaN NaN NaN NaN NaN 151.06 1 146.3 145.8 146.8 -4.7523 0 0 0 2.8426 1 30009 30009 0 0 1 50728 7911 33671 33692 49690 49690 0.24043988766857183 VILLLALRLR 10 Unmodified _VILLLALRLR_ 0 0 0 nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12 nc|ENSG00000253159|O60330-2|PCDHGA12 nc|ENSG00000253159|O60330-2|PCDHGA12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2564697265625 2 590.418626 1178.8227 NaN NaN NaN NaN NaN NaN NaN 162.35 1 157.21 156.71 157.71 -5.1438 0 0 0 0.22588 1 31540 31540 0.45834 0 1 50729 7911 33671 33692 49691 49691 0.24043988766857183 VILSEIKEA 9 Unmodified _VILSEIKEA_ 0 0 0 ENST00000570217.1_1_16:89972581-89984411:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENSG00000141002|ENST00000263346|TCF25 ENST00000570217.1_1_16:89972581-89984411:+|nuORF ENST00000570217.1_1_16:89972581-89984411:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 501.7903137207031 2 501.297507 1000.58046 -0.073345 -3.6768E-05 0.43788 0.00021951 0.36453 0.00018274 501.29767647729255 90.411 0.7045 86.551 86.191 86.896 -3.8595 48 19 3 0 0 0 0.10537 1 17649 17649 37.075 34.443 1 3717500 50730 4341 33672 33693 49692 49692 0.08019493900235375 VILSEIKEA 9 Unmodified _VILSEIKEA_ 0 0 0 ENST00000570217.1_1_16:89972581-89984411:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENSG00000141002|ENST00000263346|TCF25 ENST00000570217.1_1_16:89972581-89984411:+|nuORF ENST00000570217.1_1_16:89972581-89984411:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 501.297507 1000.58046 0.13057 6.5455E-05 0.17259 8.6519E-05 0.30316 0.00015197 501.2975626475686 86.841 0.72829 86.841 86.492 87.22 0 0.18212 -0.00017093 NaN 37.075 41 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3627600 50731 4341 33672 33693 0.08019493900235375 VILSEIKEA 9 Unmodified _VILSEIKEA_ 0 0 0 ENST00000570217.1_1_16:89972581-89984411:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENSG00000141002|ENST00000263346|TCF25 ENST00000570217.1_1_16:89972581-89984411:+|nuORF ENST00000570217.1_1_16:89972581-89984411:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 501.297507 1000.58046 0.1493 7.4844E-05 0.27795 0.00013933 0.42725 0.00021418 501.29764648228235 90.682 0.65894 86.638 86.237 86.896 -4.0443 -0.021507 -6.5295E-05 NaN 37.075 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4549400 50732 4341 33672 33693 0.08019493900235375 VILSEIKEA 9 Unmodified _VILSEIKEA_ 0 0 0 ENST00000570217.1_1_16:89972581-89984411:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENSG00000141002|ENST00000263346|TCF25 ENST00000570217.1_1_16:89972581-89984411:+|nuORF ENST00000570217.1_1_16:89972581-89984411:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 501.297507 1000.58046 0.023212 1.1636E-05 0.4851 0.00024318 0.50831 0.00025481 501.2977464456235 90.384 0.73331 86.607 86.259 86.992 -3.7779 -0.052701 0.00014239 NaN 37.075 49 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4573700 50733 4341 33672 33693 0.08019493900235375 VILVFRVK 8 Unmodified _VILVFRVK_ 0 0 0 ENST00000355485.6_1_1:116238301-116238403:+|nuORF ENST00000355485.6_1_1:116238301-116238403:+|nuORF ENST00000355485.6_1_1:116238301-116238403:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.219970703125 3 325.223417 972.648422 NaN NaN NaN NaN NaN NaN NaN 91.411 1 87.486 86.986 87.986 -3.9251 0 0 0 0.23626 1 17894 17894 0.62683 0.50396 1 50734 8957 33673 33694 49693 49693 0.16100408341560524 VILVKRPDVL 10 Unmodified _VILVKRPDVL_ 0 0 0 REV__KCTD3|p.P181L|1|0.21|ENSG00000136636|chr1:215579915-215579915|C/T|missense_variant REV__KCTD3|p.P181L|1|0.21|ENSG00000136636|chr1:215579915-215579915|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.323974609375 2 576.379166 1150.74378 NaN NaN NaN NaN NaN NaN NaN 113.02 1 113.02 112.52 113.52 0 0 0 0 2.8426 1 22225 22225 0.26539 0.19213 1 + 50735 23707 33674 33695 49694 49694 0.174437167419228 VILYCVNEI 9 Unmodified _VILYCVNEI_ 0 0 0 REV__ENST00000556631.1_1_14:56139269-56139539:+|nuORF REV__ENST00000556631.1_1_14:56139269-56139539:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2635498046875 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 138.27 1 133.63 133.13 134.13 -4.6413 0 0 0 0.23048 1 27299 27299 14.582 0.67564 1 + 50736 23000 33675 33696 49695 49695 0.02792151511107477 VINANPASPP 10 Unmodified _VINANPASPP_ 0 0 0 AIMP2|p.I122T|1|0.34|ENSG00000106305|chr7:6017836-6017836|T/C|missense_variant;nc|ENSG00000106305|Q13155-2|AIMP2;ENSG00000106305|ENST00000223029|AIMP2 AIMP2|p.I122T|1|0.34|ENSG00000106305|chr7:6017836-6017836|T/C|missense_variant AIMP2|p.I122T|1|0.34|ENSG00000106305|chr7:6017836-6017836|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2640380859375 2 490.263999 978.513445 0.096846 4.748E-05 -0.12904 -6.3264E-05 -0.032194 -1.5784E-05 490.2640044804408 83.369 0.73692 79.761 79.413 80.15 -3.6079 31 20 2 0 0 0 0.40911 1 16245 16245 0.51642 0 1 1768800 50737 107 33676 33697 49696 49696 0.023328834091330464 VINANPASPP 10 Unmodified _VINANPASPP_ 0 0 0 AIMP2|p.I122T|1|0.34|ENSG00000106305|chr7:6017836-6017836|T/C|missense_variant;nc|ENSG00000106305|Q13155-2|AIMP2;ENSG00000106305|ENST00000223029|AIMP2 AIMP2|p.I122T|1|0.34|ENSG00000106305|chr7:6017836-6017836|T/C|missense_variant AIMP2|p.I122T|1|0.34|ENSG00000106305|chr7:6017836-6017836|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.263671875 2 490.263999 978.513445 -0.31428 -0.00015408 0.26082 0.00012787 -0.053453 -2.6206E-05 490.26418532781537 83.498 0.75861 79.799 79.246 80.005 -3.6985 30 21 2 0 0 0 0.40911 1 15895 15895 0.51642 0 1 1550100 50738 107 33676 33697 49697 49697 0.023328834091330464 VIPACGQPEAP 11 Unmodified _VIPACGQPEAP_ 0 0 0 ENST00000504747.1_10:48738623-48827915:-|nuORF ENST00000504747.1_10:48738623-48827915:-|nuORF ENST00000504747.1_10:48738623-48827915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.26953125 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 90.349 1 90.349 89.849 90.849 0 0 0 0 0.22632 1 17649 17649 0.172 0 1 50739 10660 33677 33698 49698 49698 -0.009662071540560646 VIPKVPAK 8 Unmodified _VIPKVPAK_ 0 0 0 ENST00000490599.1_1_9:99083098-99083179:-|nuORF ENST00000490599.1_1_9:99083098-99083179:-|nuORF ENST00000490599.1_1_9:99083098-99083179:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.2906799316406 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 45.077 1 42.212 41.712 42.712 -2.8653 0 0 0 0.21486 1 8178 8178 2.5775 1.7838 1 50740 10514 33678 33699 49699 49699 0.13276457524796115 VIPNYDDMDY 10 Unmodified _VIPNYDDMDY_ 0 0 0 ENSG00000106624|ENST00000223357|AEBP1 ENSG00000106624|ENST00000223357|AEBP1 ENSG00000106624|ENST00000223357|AEBP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7646484375 2 622.760629 1243.5067 NaN NaN NaN NaN NaN NaN NaN 68.54 1 65.004 64.504 65.504 -3.5362 0 0 0 0.22588 1 12884 12884 7.2892 1.5574 1 50741 2396 33679 33700 49700 49700 -0.10530842324396872 VIPPRTELR 9 Unmodified _VIPPRTELR_ 0 0 0 nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;ENSG00000155629|ENST00000339364|PIK3AP1;ENST00000489982.1_1_10:98363615-98369622:-|nuORF;nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1 nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.275390625 2 540.82984 1079.64513 0.35307 0.00019095 -1.0517 -0.00056881 -0.69868 -0.00037787 541.3320615540259 141.08 0.17218 136.22 136.08 136.25 -4.8677 6 4 2 0 0 0 0.81703 1 27214 27214 10.074 2.7847 1 1677600 50742 5052 33680 33701 49701 49701 0.10849113496874452 VIQKGSSL 8 Unmodified _VIQKGSSL_ 0 0 0 nc|ENSG00000130695|Q6P2H3|CEP85;ENSG00000130695|ENST00000451429|CEP85 nc|ENSG00000130695|Q6P2H3|CEP85 nc|ENSG00000130695|Q6P2H3|CEP85 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 416.25103759765625 2 416.25036 830.486168 NaN NaN NaN NaN NaN NaN NaN 161.31 1 156.06 155.56 156.56 -5.2526 0 0 0 0.21486 1 31306 31306 5.7604 0 1 50743 3626 33681 33702 49702 49702 0.06414399868754117 VIQKYWRRVL 10 Unmodified _VIQKYWRRVL_ 0 0 0 ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant;ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.N1680Kfs*11|1|0.33|ENSG00000066279|chr1:197104211-197104212|-/T|frameshift_variant;ASPM|p.I1717Nfs*24|1|0.43|ENSG00000066279|chr1:197104101-197104102|-/T|frameshift_variant;ASPM|p.L1872Ffs*24|1|0.43|ENSG00000066279|chr1:197103635-197103636|-/A|frameshift_variant;ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7599182128906 3 454.278585 1359.81392 0.25097 0.00011401 -1.1056 -0.00050224 -0.85462 -0.00038823 454.27807358338737 124.95 0.57034 124.95 124.54 125.11 0 24 15 2 0 0 0 1.1276 1 24616 24616 0.26539 0 1 2663000 50744 239 33682 33703 49703 49703 0.14841015130377855 VIQLSDEQI 9 Unmodified _VIQLSDEQI_ 0 0 0 REV__ENST00000505736.5_1_4:137837332-138133925:-|nuORF REV__ENST00000505736.5_1_4:137837332-138133925:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2719116210938 2 522.782222 1043.54989 0.12889 6.7381E-05 0.88644 0.00046342 1.0153 0.0005308 522.7824697344336 86.232 0.41838 82.503 82.274 82.693 -3.7289 13 11 2 0 0 0 0.82765 1 16518 16518 5.7319 0 1 1082900 + 50745 22479 33683 33704 49704 49704 0.02985715515183074 VIRIKIKRFIK 11 Unmodified _VIRIKIKRFIK_ 0 0 0 REV__HELLS|p.K156Rfs*27|1|0.04|ENSG00000119969|chr10:94571415-94571415|A/-|frameshift_variant REV__HELLS|p.K156Rfs*27|1|0.04|ENSG00000119969|chr10:94571415-94571415|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 472.2437438964844 3 471.99753 1412.97076 NaN NaN NaN NaN NaN NaN NaN 179.46 1 179.46 178.96 179.96 0 0 0 0 0.23698 1 37176 37176 0 0 1 + 50746 23608 33684 33705 49705 49705 0.28079300020726805 VIRKLVIPKR 10 Unmodified _VIRKLVIPKR_ 0 0 0 REV__ENSG00000146670|ENST00000275517|CDCA5 REV__ENSG00000146670|ENST00000275517|CDCA5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 407.9250793457031 3 407.955442 1220.8445 NaN NaN NaN NaN NaN NaN NaN 10.662 1 9.7575 9.2575 10.257 -0.90401 0 0 0 0.22588 1 1354 1354 0 0 1 + 50747 16896 33685 33706 49706 49706 0.2429079351541077 VIRNFIGLY 9 Unmodified _VIRNFIGLY_ 0 0 0 REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1 REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7927856445312 2 547.821484 1093.62842 NaN NaN NaN NaN NaN NaN NaN 56.808 1 53.913 53.413 54.413 -2.8944 0 0 0 0.23508 1 10893 10893 4.756 0 1 + 50748 25151 33686 33707 49707 49707 0.08534612610947079 VIRTVILLVI 10 Unmodified _VIRTVILLVI_ 0 0 0 REV__ENSG00000124564|ENST00000397060|SLC17A3 REV__ENSG00000124564|ENST00000397060|SLC17A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 569.9486083984375 2 569.899734 1137.78492 NaN NaN NaN NaN NaN NaN NaN 163.9 1 158.84 158.34 159.34 -5.0648 0 0 0 2.8426 1 31924 31924 0.013265 0 1 + 50749 15784 33687 33708 49708 49708 0.22153477781398578 VISCGRRE 8 Unmodified _VISCGRRE_ 0 0 0 ENST00000490869.1_1_X:47063082-47065999:+|nuORF ENST00000490869.1_1_X:47063082-47065999:+|nuORF ENST00000490869.1_1_X:47063082-47065999:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2405090332031 2 460.242544 918.470534 NaN NaN NaN NaN NaN NaN NaN 119.62 1 119.62 119.12 120.12 0 0 0 0 0.23025 1 23573 23573 0.12286 0 1 50750 10520 33688 33709 49709 49709 0.008037900800559328 VISENRFV 8 Unmodified _VISENRFV_ 0 0 0 REV__ENSG00000113805|ENST00000263665|CNTN3 REV__ENSG00000113805|ENST00000263665|CNTN3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 482.26531982421875 2 482.266542 962.51853 NaN NaN NaN NaN NaN NaN NaN 94.082 1 90.238 89.738 90.738 -3.844 0 0 0 0.22847 1 18045 18045 10.074 3.8681 1 + 50751 15352 33689 33710 49710 49710 0.03577187271753246 VISGEHRTG 9 Unmodified _VISGEHRTG_ 0 0 0 ENST00000367592.5_1_6:143772031-143772109:+|nuORF ENST00000367592.5_1_6:143772031-143772109:+|nuORF ENST00000367592.5_1_6:143772031-143772109:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.728271484375 2 478.251423 954.488293 -0.13631 -6.5188E-05 0.16355 7.8218E-05 0.027243 1.3029E-05 478.2515651303425 22.251 0.34951 20.797 20.595 20.944 -1.4535 18 9 3 0 0 0 0.36034 1 3497 3497 36.127 0 1 600670 50752 9075 33690 33711 49711 49711 0.009228286065649627 VISLIIHH 8 Unmodified _VISLIIHH_ 0 0 0 AP2A2|p.A312V|1|0.22|ENSG00000183020|chr11:985555-985555|C/T|missense_variant AP2A2|p.A312V|1|0.22|ENSG00000183020|chr11:985555-985555|C/T|missense_variant AP2A2|p.A312V|1|0.22|ENSG00000183020|chr11:985555-985555|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.20458984375 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 103.25 1 103.25 102.75 103.75 0 0 0 0 0.21486 1 20287 20287 0.45834 0 1 50753 173 33691 33712 49712 49712 0.09702671893705883 VISLIIHH 8 Unmodified _VISLIIHH_ 0 0 0 AP2A2|p.A312V|1|0.22|ENSG00000183020|chr11:985555-985555|C/T|missense_variant AP2A2|p.A312V|1|0.22|ENSG00000183020|chr11:985555-985555|C/T|missense_variant AP2A2|p.A312V|1|0.22|ENSG00000183020|chr11:985555-985555|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.1853942871094 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 74.46 1 71.095 70.595 71.595 -3.3643 0 0 0 0.21486 1 14526 14526 0.45834 0 1 50754 173 33691 33712 49713 49713 0.09702671893705883 VISMCREWRE 10 Unmodified _VISMCREWRE_ 0 0 0 REV__INTS3|p.L52W|1|0.32|ENSG00000143624|chr1:153740655-153740655|T/G|missense_variant REV__INTS3|p.L52W|1|0.32|ENSG00000143624|chr1:153740655-153740655|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21649169921875 3 436.877764 1307.61146 NaN NaN NaN NaN NaN NaN NaN 127.73 1 123.03 122.53 123.53 -4.6998 0 0 0 0.22588 1 24574 24574 5.0475 0.3316 1 + 50755 23665 33692 33713 49714 49714 -0.0300399932880282 VISPHGIASV 10 Unmodified _VISPHGIASV_ 0 0 0 ENST00000489065.1_1_2:224866320-224903835:-|nuORF;SERPINE2|p.I345Nfs*2|1|0.33|ENSG00000135919|chr2:223980352-223980353|-/T|frameshift_variant;ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2 ENST00000489065.1_1_2:224866320-224903835:-|nuORF ENST00000489065.1_1_2:224866320-224903835:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2645568847656 2 490.282192 978.549831 0.62524 0.00030654 -0.43756 -0.00021453 0.18768 9.2014E-05 490.2819321491401 79.755 0.66183 79.755 79.377 80.039 0 32 18 3 0 0 0 0.22493 1 15546 15546 53.833 23.196 1 2753500 50756 3966 33693 33714 49715 49715 0.05969760305856653 VISPHGIASV 10 Unmodified _VISPHGIASV_ 0 0 0 ENST00000489065.1_1_2:224866320-224903835:-|nuORF;SERPINE2|p.I345Nfs*2|1|0.33|ENSG00000135919|chr2:223980352-223980353|-/T|frameshift_variant;ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2 ENST00000489065.1_1_2:224866320-224903835:-|nuORF ENST00000489065.1_1_2:224866320-224903835:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2642822265625 2 490.282192 978.549831 0.10064 4.9344E-05 -0.51868 -0.0002543 -0.41803 -0.00020495 490.28191324386495 83.124 0.63454 79.516 79.127 79.762 -3.6079 27 17 2 0 0 0 0.46818 1 16291 16291 27.629 8.3718 1 2038100 50757 3966 33693 33714 49716 49716 0.05969760305856653 VISPHGIASV 10 Unmodified _VISPHGIASV_ 0 0 0 ENST00000489065.1_1_2:224866320-224903835:-|nuORF;SERPINE2|p.I345Nfs*2|1|0.33|ENSG00000135919|chr2:223980352-223980353|-/T|frameshift_variant;ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2 ENST00000489065.1_1_2:224866320-224903835:-|nuORF ENST00000489065.1_1_2:224866320-224903835:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2742614746094 2 490.282192 978.549831 0.2085 0.00010222 0.5319 0.00026078 0.7404 0.00036301 490.28188146438526 83.402 0.63946 79.529 79.186 79.825 -3.8736 38 17 3 0 0 0 0.4708 1 15890 15890 26.268 0.86883 1 2030000 50758 3966 33693 33714 49717 49717 0.05969760305856653 VISPHGIASV 10 Unmodified _VISPHGIASV_ 0 0 0 ENST00000489065.1_1_2:224866320-224903835:-|nuORF;SERPINE2|p.I345Nfs*2|1|0.33|ENSG00000135919|chr2:223980352-223980353|-/T|frameshift_variant;ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2 ENST00000489065.1_1_2:224866320-224903835:-|nuORF ENST00000489065.1_1_2:224866320-224903835:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2563781738281 2 490.282192 978.549831 -0.32408 -0.00015889 1.0255 0.0005028 0.70146 0.00034391 490.2821205217048 83.221 0.61878 79.522 79.211 79.829 -3.6985 38 17 3 0 0 0 0.25077 1 15876 15876 51.63 15.503 1 1694900 50759 3966 33693 33714 49718 49718 0.05969760305856653 VISPHGIASV 10 Unmodified _VISPHGIASV_ 0 0 0 ENST00000489065.1_1_2:224866320-224903835:-|nuORF;SERPINE2|p.I345Nfs*2|1|0.33|ENSG00000135919|chr2:223980352-223980353|-/T|frameshift_variant;ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2 ENST00000489065.1_1_2:224866320-224903835:-|nuORF ENST00000489065.1_1_2:224866320-224903835:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.282192 978.549831 0.2085 0.00010222 0.5319 0.00026078 0.7404 0.00036301 490.28188146438526 83.402 0.63946 79.529 79.186 79.825 -3.8736 -0.051839 0.00061816 NaN 45.7 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2030000 50760 3966 33693 33714 0.05969760305856653 VITEIEKK 8 Unmodified _VITEIEKK_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant;RIF1|p.N245Kfs*2|1|0.44|ENSG00000080345|chr2:151422985-151422986|-/A|frameshift_variant;RIF1|p.S472Ffs*13|1|0.23|ENSG00000080345|chr2:151437275-151437276|-/T|frameshift_variant;RIF1|p.S472Pfs*34|1|0.3|ENSG00000080345|chr2:151437276-151437276|T/-|frameshift_variant;RIF1|p.S692Qfs*10|1|0.13|ENSG00000080345|chr2:151445420-151445420|T/-|frameshift_variant;RIF1|p.S692Ffs*15|1|0.43|ENSG00000080345|chr2:151445419-151445420|-/T|frameshift_variant nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7709045410156 2 480.292225 958.569897 -0.026078 -1.2525E-05 0.17757 8.5284E-05 0.15149 7.2758E-05 480.2922482041259 135.01 1.1477 135.01 134.49 135.64 0 102 32 4 0 0 0 8448 1 26667 26667 29.841 6.0508 1 153880000 50761 1610 33694 33715 49719 49719 0.0889551124580521 VITEIEKK 8 Unmodified _VITEIEKK_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant;RIF1|p.N245Kfs*2|1|0.44|ENSG00000080345|chr2:151422985-151422986|-/A|frameshift_variant;RIF1|p.S472Ffs*13|1|0.23|ENSG00000080345|chr2:151437275-151437276|-/T|frameshift_variant;RIF1|p.S472Pfs*34|1|0.3|ENSG00000080345|chr2:151437276-151437276|T/-|frameshift_variant;RIF1|p.S692Qfs*10|1|0.13|ENSG00000080345|chr2:151445420-151445420|T/-|frameshift_variant;RIF1|p.S692Ffs*15|1|0.43|ENSG00000080345|chr2:151445419-151445420|-/T|frameshift_variant nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 482.2666931152344 2 480.292225 958.569897 0.21352 0.00010255 -0.15568 -7.4774E-05 0.057836 2.7778E-05 480.2921025244615 139.56 1.5403 134.71 134.18 135.72 -4.8492 135 43 5 0 0 0 8448 1 26847 26847 6.2058 0 1 156150000 50762 1610 33694 33715 49720 49720 0.0889551124580521 VITILDKNGN 10 Unmodified _VITILDKNGN_ 0 0 0 tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7954711914062 2 543.811313 1085.60807 0.14301 7.777E-05 -0.57982 -0.00031531 -0.43681 -0.00023754 543.8108666928409 93.573 0.52411 89.729 89.398 89.922 -3.844 21 14 2 0 0 0 0.4708 1 17960 17960 26.268 2.4671 1 1159500 50763 26406 33695 33716 49721 49721 0.06869397160471635 VITILDKNGN 10 Unmodified _VITILDKNGN_ 0 0 0 tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.811313 1085.60807 0.19272 0.0001048 0.023199 1.2616E-05 0.21592 0.00011742 543.8112637181646 89.846 0.38409 89.846 89.599 89.983 0 0.058321 0.00041065 NaN 26.268 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2167500 50764 26406 33695 33716 0.06869397160471635 VITILDKNGN 10 Unmodified _VITILDKNGN_ 0 0 0 tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 543.811313 1085.60807 0.14301 7.777E-05 -0.57982 -0.00031531 -0.43681 -0.00023754 543.8108666928409 93.573 0.52411 89.729 89.398 89.922 -3.844 -0.058321 -0.00024521 NaN 26.268 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1159500 50765 26406 33695 33716 0.06869397160471635 VITKSGRR 8 Unmodified _VITKSGRR_ 0 0 0 ENST00000477081.1_1_17:59477759-59482423:+|nuORF;ENSG00000121068|ENST00000240328|TBX2;TBX3|p.K137*|1|0.15|ENSG00000135111|chr12:114681127-114681128|-/A|frameshift_variant;TBX3|p.A147Sfs*13|2|0.31|ENSG00000135111|chr12:114681097-114681098|-/T|frameshift_variant;TBX3|p.D215Nfs*27|1|0.05|ENSG00000135111|chr12:114680890-114680893|TGTC/-|frameshift_variant;ENST00000552054.1_1_12:115118611-115121104:-|nuORF;nc|ENSG00000135111|O15119-3|TBX3;TBX3|p.S443Afs*194|1|1.0|ENSG00000135111|chr12:114674609-114674610|-/ATGGTGGCGGGGCT|frameshift_variant;TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;TBX3|p.E195Gfs*32|1|0.51|ENSG00000135111|chr12:114680952-114680953|-/C|frameshift_variant ENST00000477081.1_1_17:59477759-59482423:+|nuORF;nc|ENSG00000135111|O15119-3|TBX3;TBX3|p.E195Gfs*32|1|0.51|ENSG00000135111|chr12:114680952-114680953|-/C|frameshift_variant ENST00000477081.1_1_17:59477759-59482423:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23248291015625 2 458.787976 915.561398 0.25236 0.00011578 0.10357 4.7519E-05 0.35593 0.0001633 458.7879031685945 149.56 1.1233 149.56 149.16 150.29 0 84 31 4 0 0 0 8448 1 29967 29967 0.30703 0 1 30907000 50766 3167;3902;25825 33696 33717 49722 49722 0.10024002119860143 VITPLLAVD 9 Unmodified _VITPLLAVD_ 0 0 0 REV__ENST00000497873.1_1_21:34107263-34123563:-|nuORF REV__ENST00000497873.1_1_21:34107263-34123563:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.18621826171875 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 102.53 1 98.344 97.844 98.844 -4.1861 0 0 0 0.23508 1 20153 20153 2.4985 0.21571 1 + 50767 17357 33697 33718 49723 49723 0.09188412734147278 VITVFSSVKN 10 Unmodified _VITVFSSVKN_ 0 0 0 nc|ENSG00000078319|A4D2B8|PMS2P1;ENST00000305928.5_7:74945214-74945265:-|nuORF;nc|ENSG00000123965|A8MQ11|PMS2P5 nc|ENSG00000078319|A4D2B8|PMS2P1 nc|ENSG00000078319|A4D2B8|PMS2P1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.79052734375 2 547.316232 1092.61791 0.16554 9.0603E-05 0.26208 0.00014344 0.42762 0.00023404 547.3163111466331 92.218 0.69153 88.293 87.857 88.549 -3.9251 61 19 4 0 0 0 0.33162 1 18039 18039 51.63 11.391 1 17212000 50768 12236 33698 33719 49724 49724 0.07530585165864068 VITVFSSVKN 10 Unmodified _VITVFSSVKN_ 0 0 0 nc|ENSG00000078319|A4D2B8|PMS2P1;ENST00000305928.5_7:74945214-74945265:-|nuORF;nc|ENSG00000123965|A8MQ11|PMS2P5 nc|ENSG00000078319|A4D2B8|PMS2P1 nc|ENSG00000078319|A4D2B8|PMS2P1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.776123046875 2 547.316232 1092.61791 0.29792 0.00016306 0.59321 0.00032467 0.89113 0.00048773 547.3165563015497 92.337 1.047 88.243 87.875 88.922 -4.0946 73 29 4 0 0 0 0.29062 1 17627 17627 38.176 2.0485 1 19115000 50769 12236 33698 33719 49725 49725 0.07530585165864068 VITVFSSVKN 10 Unmodified _VITVFSSVKN_ 0 0 0 nc|ENSG00000078319|A4D2B8|PMS2P1;ENST00000305928.5_7:74945214-74945265:-|nuORF;nc|ENSG00000123965|A8MQ11|PMS2P5 nc|ENSG00000078319|A4D2B8|PMS2P1 nc|ENSG00000078319|A4D2B8|PMS2P1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7891845703125 2 547.316232 1092.61791 0.18173 9.9466E-05 0.53534 0.000293 0.71707 0.00039247 547.3165330846771 92.067 0.92317 88.259 87.896 88.819 -3.8083 69 26 4 0 0 0 0.20972 1 17655 17655 43.772 5.1576 1 16013000 50770 12236 33698 33719 49726 49726 0.07530585165864068 VITVFSSVKN 10 Unmodified _VITVFSSVKN_ 0 0 0 nc|ENSG00000078319|A4D2B8|PMS2P1;ENST00000305928.5_7:74945214-74945265:-|nuORF;nc|ENSG00000123965|A8MQ11|PMS2P5 nc|ENSG00000078319|A4D2B8|PMS2P1 nc|ENSG00000078319|A4D2B8|PMS2P1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 547.316232 1092.61791 0.22493 0.00012311 0.087449 4.7863E-05 0.31238 0.00017097 547.316153230633 88.359 0.69827 88.359 88.02 88.718 0 0.070304 -0.00023394 NaN 43.772 63 19 5 NaN NaN NaN NaN 0 NaN NaN 0 12180000 50771 12236 33698 33719 0.07530585165864068 VITVIEGRAE 10 Unmodified _VITVIEGRAE_ 0 0 0 ENST00000489628.1_1_3:195597236-195606066:-|nuORF;ENST00000481865.5_1_3:195596955-195610258:-|nuORF;TNK2|p.Q508Sfs*3|2|0.17|ENSG00000061938|chr3:195870135-195870135|G/-|frameshift_variant;nc|ENSG00000061938|Q07912-2|TNK2;TNK2|p.D495Rfs*25|1|0.24|ENSG00000061938|chr3:195870174-195870175|-/G|frameshift_variant;TNK2|p.Q831Rfs*2|1|0.24|ENSG00000061938|chr3:195867762-195867762|G/-|frameshift_variant;TNK2|p.L888Cfs*83|1|0.6|ENSG00000061938|chr3:195867591-195867591|G/-|frameshift_variant;nc|ENSG00000061938|Q07912|TNK2;nc|ENSG00000061938|Q07912-3|TNK2;ENSG00000061938|ENST00000672887|TNK2 ENST00000489628.1_1_3:195597236-195606066:-|nuORF ENST00000489628.1_1_3:195597236-195606066:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7813110351562 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 123.73 1 119.16 118.66 119.66 -4.5757 0 0 0 2.8426 1 24392 24392 0.26539 0.058062 1 50772 1321 33699 33720 49727 49727 0.06869397160471635 VITVIEPGL 9 Unmodified _VITVIEPGL_ 0 0 0 ENSG00000067704|ENST00000366922|IARS2;ENST00000467924.1_1_1:220313569-220316509:+|nuORF ENSG00000067704|ENST00000366922|IARS2 ENSG00000067704|ENST00000366922|IARS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.23260498046875 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 130.16 1 125.32 124.82 125.82 -4.8355 0 0 0 0.23508 1 24989 24989 2.7352 0 1 50773 1392 33700 33721 49728 49728 0.09188412734147278 VIVAAFTW 8 Unmodified _VIVAAFTW_ 0 0 0 nc|ENSG00000005483|Q8IZD2-3|KMT2E nc|ENSG00000005483|Q8IZD2-3|KMT2E nc|ENSG00000005483|Q8IZD2-3|KMT2E MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7581481933594 2 453.757821 905.501089 NaN NaN NaN NaN NaN NaN NaN 139.4 1 134.45 133.95 134.95 -4.952 0 0 0 0.23749 1 26816 26816 0.12286 0.11459 1 50774 12204 33701 33722 49729 49729 0.04455891736745343 VIVKKKKKKKK 11 Unmodified _VIVKKKKKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 678.2096557617188 2 678.002857 1353.99116 NaN NaN NaN NaN NaN NaN NaN 170.9 1 170.9 170.4 171.4 0 0 0 0 0.23698 1 35170 35170 0 0 1 50775 9387 33702 33723 49730 49730 0.3283247068052333 VIVLLLLLLLH 11 Unmodified _VIVLLLLLLLH_ 0 0 0 REV__IL21R|p.G360Afs*20|1|0.12|ENSG00000103522|chr16:27448740-27448740|G/-|frameshift_variant REV__IL21R|p.G360Afs*20|1|0.12|ENSG00000103522|chr16:27448740-27448740|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 629.8272705078125 2 629.946685 1257.87882 NaN NaN NaN NaN NaN NaN NaN 173.56 1 173.56 173.06 174.06 0 0 0 0 0.23698 1 35895 35895 0 0 1 + 50776 14889 33703 33724 49731 49731 0.26019196883703444 VIWGKVTRA 9 Unmodified _VIWGKVTRA_ 0 0 0 ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF ENSG00000182899|ENST00000647248|RPL35A ENSG00000182899|ENST00000647248|RPL35A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.2067565917969 3 343.87831 1028.6131 -0.66058 -0.00022716 -0.15826 -5.4422E-05 -0.81884 -0.00028158 343.87851335741885 62.057 0.6124 62.057 61.699 62.312 0 41 17 4 0 0 0 0.074448 1 11924 11924 86.332 62.542 1 3849600 50777 6818 33704 33725 49732 49732 0.09993745813744681 VIWGKVTRA 9 Unmodified _VIWGKVTRA_ 0 0 0 ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF ENSG00000182899|ENST00000647248|RPL35A ENSG00000182899|ENST00000647248|RPL35A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.2070007324219 3 343.87831 1028.6131 -0.38308 -0.00013173 -0.2433 -8.3664E-05 -0.62637 -0.0002154 343.8783734796421 65.172 0.60741 61.888 61.623 62.23 -3.2832 48 17 4 0 0 0 0.058839 1 12232 12232 76.825 63.21 1 5057700 50778 6818 33704 33725 49733 49733 0.09993745813744681 VIWGKVTRA 9 Unmodified _VIWGKVTRA_ 0 0 0 ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF ENSG00000182899|ENST00000647248|RPL35A ENSG00000182899|ENST00000647248|RPL35A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 343.87831 1028.6131 -0.25884 -8.9009E-05 -0.1544 -5.3096E-05 -0.41324 -0.0001421 343.8783437058949 65.04 0.61849 61.993 61.659 62.278 -3.047 0.0038089 3.4106E-05 NaN 76.825 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 6491800 50779 6818 33704 33725 0.09993745813744681 VIWGKVTRA 9 Unmodified _VIWGKVTRA_ 0 0 0 ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF ENSG00000182899|ENST00000647248|RPL35A ENSG00000182899|ENST00000647248|RPL35A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 343.87831 1028.6131 0.2353 8.0916E-05 -0.18378 -6.3197E-05 0.051528 1.7719E-05 343.8781735290983 65.475 0.49306 62.017 61.75 62.243 -3.4581 0.028492 3.8026E-06 NaN 76.825 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3489200 50780 6818 33704 33725 0.09993745813744681 VIWKDTWM 8 Unmodified _VIWKDTWM_ 0 0 0 ENST00000402538.7_1_2:33787811-33787985:+|nuORF ENST00000402538.7_1_2:33787811-33787985:+|nuORF ENST00000402538.7_1_2:33787811-33787985:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20013427734375 3 360.184522 1077.53174 NaN NaN NaN NaN NaN NaN NaN 35.857 1 35.857 35.357 36.357 0 0 0 0 0.21486 1 6596 6596 9.3831 1.2276 1 50781 9516 33705 33726 49734 49734 -0.003926979405378006 VIWSHAIQKY 10 Unmodified _VIWSHAIQKY_ 0 0 0 ENSG00000113812|ENST00000335754|ACTR8;nc|ENSG00000113812|Q9H981-2|ACTR8;ACTR8|p.S259Qfs*18|1|0.38|ENSG00000113812|chr3:53876623-53876623|A/-|frameshift_variant ENSG00000113812|ENST00000335754|ACTR8 ENSG00000113812|ENST00000335754|ACTR8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7626342773438 2 622.842948 1243.67134 NaN NaN NaN NaN NaN NaN NaN 70.93 1 67.463 66.963 67.963 -3.467 0 0 0 0.22588 1 13438 13438 6.7232 0.99131 1 50782 2765 33706 33727 49735 49735 0.05925382668374368 VKAAAAVAQL 10 Unmodified _VKAAAAVAQL_ 0 0 0 REV__ENST00000355977.10_1_1:67390688-67391875:+|nuORF REV__ENST00000355977.10_1_1:67390688-67391875:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 471.2134704589844 2 471.292559 940.570566 -0.061551 -2.9009E-05 -0.13064 -6.157E-05 -0.19219 -9.0579E-05 471.2925279919119 92.541 0.62894 88.616 88.267 88.896 -3.9251 33 17 3 0 0 0 1.1036 1 18169 18169 20.871 5.914 1 2862700 + 50783 20805 33707 33728 49736 49736 0.09790350685500471 VKAAAAVAQL 10 Unmodified _VKAAAAVAQL_ 0 0 0 REV__ENST00000355977.10_1_1:67390688-67391875:+|nuORF REV__ENST00000355977.10_1_1:67390688-67391875:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 471.292559 940.570566 0.21223 0.00010002 -0.11427 -5.3854E-05 0.097962 4.6169E-05 471.29245268577193 92.765 0.5567 88.622 88.317 88.874 -4.1435 -0.028783 -6.6344E-05 NaN 20.871 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3589100 + 50784 20805 33707 33728 0.09790350685500471 VKAAAAVAQL 10 Unmodified _VKAAAAVAQL_ 0 0 0 REV__ENST00000355977.10_1_1:67390688-67391875:+|nuORF REV__ENST00000355977.10_1_1:67390688-67391875:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 471.292559 940.570566 0.097242 4.5829E-05 0.096587 4.5521E-05 0.19383 9.135E-05 471.292517376917 92.522 0.60938 88.714 88.409 89.019 -3.8083 0.06339 0.0001324 NaN 20.871 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4144100 + 50785 20805 33707 33728 0.09790350685500471 VKAKKKKKK 9 Unmodified _VKAKKKKKK_ 0 0 0 ENSG00000189134|ENST00000343684|NKAPL ENSG00000189134|ENST00000343684|NKAPL ENSG00000189134|ENST00000343684|NKAPL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7742309570312 2 543.397693 1084.78083 0.45515 0.00024733 0.2199 0.00011949 0.67505 0.00036682 543.3988825383542 123.74 0.2172 119.01 118.89 119.11 -4.731 5 3 2 0 0 0 0.88449 1 23766 23766 0.45834 0.45834 1 1552500 50786 7216 33708 33729 49737 49737 0.24183433078360395 VKAKKKKKKK 10 Unmodified _VKAKKKKKKK_ 0 0 0 ENSG00000189134|ENST00000343684|NKAPL ENSG00000189134|ENST00000343684|NKAPL ENSG00000189134|ENST00000343684|NKAPL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 405.31134033203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 32.633 1 30.485 29.985 30.985 -2.1483 0 0 0 0.22588 1 5661 5661 0.13989 0.13989 1 50787 7216 33709 33730 49738 49738 0.2778736654954628 VKAKRKQQRL 10 Unmodified _VKAKRKQQRL_ 0 0 0 REV__ENST00000517329.1_1_5:150414505-150415196:-|nuORF REV__ENST00000517329.1_1_5:150414505-150415196:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.9736328125 4 314.458382 1253.80442 -0.61893 -0.00019463 0.51336 0.00016143 -0.10557 -3.3196E-05 314.45847134950463 12.566 0.13621 12.566 12.478 12.615 0 5 3 2 0 0 0 0.91149 1 1753 1753 0.69767 0 1 225270 + 50788 22596 33710 33731 49739 49739 0.18767246844890906 VKAKRKQQRL 10 Unmodified _VKAKRKQQRL_ 0 0 0 REV__ENST00000517329.1_1_5:150414505-150415196:-|nuORF REV__ENST00000517329.1_1_5:150414505-150415196:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 314.458382 1253.80442 -0.93159 -0.00029295 0.86275 0.0002713 -0.068835 -2.1646E-05 314.4585753673574 13.269 0.13757 12.259 12.172 12.31 -1.0098 -0.15322 0.00022474 NaN 0.69767 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 262620 + 50789 22596 33710 33731 0.18767246844890906 VKARIVIDS 9 Unmodified _VKARIVIDS_ 0 0 0 REV__TIMP3|p.A199Rfs*5|1|0.25|ENSG00000100234|chr22:32859335-32859336|-/C|frameshift_variant REV__TIMP3|p.A199Rfs*5|1|0.25|ENSG00000100234|chr22:32859335-32859336|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.2008361816406 3 334.209836 999.60768 NaN NaN NaN NaN NaN NaN NaN 159.66 1 154.39 153.89 154.89 -5.2712 0 0 0 0.23508 1 30982 30982 1.0715 0 1 + 50790 14678 33711 33732 49740 49740 0.10786022231263814 VKCGDERGSHR 11 Unmodified _VKCGDERGSHR_ 0 0 0 REV__nc|ENSG00000141644|Q9UIS9-2|MBD1 REV__nc|ENSG00000141644|Q9UIS9-2|MBD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7670288085938 2 622.301652 1242.58875 NaN NaN NaN NaN NaN NaN NaN 95.319 1 91.438 90.938 91.938 -3.881 0 0 0 0.2062 1 18289 18289 16.566 0 1 + 50791 24074 33712 33733 49741 49741 -0.02283882402070958 VKCKMEDD 8 Unmodified _VKCKMEDD_ 0 0 0 ENST00000568300.6_1_16:19775348-19867867:+|nuORF;ENSG00000174628|ENST00000695302|IQCK ENST00000568300.6_1_16:19775348-19867867:+|nuORF ENST00000568300.6_1_16:19775348-19867867:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1592102050781 3 323.145627 966.415053 NaN NaN NaN NaN NaN NaN NaN 96.445 1 92.347 91.847 92.847 -4.0978 0 0 0 0.21486 1 18914 18914 0.40072 0 1 50792 6361 33713 33734 49742 49742 -0.06949804222574585 VKCSLVLAK 9 Unmodified _VKCSLVLAK_ 0 0 0 REV__nc|ENSG00000113456|O60671-2|RAD1 REV__nc|ENSG00000113456|O60671-2|RAD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24273681640625 2 480.799163 959.583773 0.11841 5.6932E-05 -0.11813 -5.6797E-05 0.00028088 1.3505E-07 480.79905181472634 60.982 0.59356 57.759 57.456 58.049 -3.2237 27 16 2 0 0 0 0.74858 1 11422 11422 17.113 0 1 1528500 + 50793 15344 33714 33735 49743 49743 0.10236465473246881 VKCYLQLAGV 10 Unmodified _VKCYLQLAGV_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7859497070312 2 547.307352 1092.60015 0.38833 0.00021253 -1.7719 -0.00096976 -1.3835 -0.00075722 547.306036579066 145.58 0.1373 140.64 140.59 140.73 -4.9445 5 3 2 0 0 0 0.48196 1 28164 28164 0.20733 0 1 1384700 50794 7260 33715 33736 49744 49744 0.05755546639329623 VKDELKIYA 9 Unmodified _VKDELKIYA_ 0 0 0 REV__ENST00000546181.2_2_12:8234884-8242646:+|nuORF REV__ENST00000546181.2_2_12:8234884-8242646:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2087707519531 3 360.209613 1077.60701 NaN NaN NaN NaN NaN NaN NaN 150.7 1 150.7 150.2 151.2 0 0 0 0 0.19622 1 30174 30174 0.96228 0 1 + 50795 14535 33716 33737 49745 49745 0.0713118279156788 VKDSSSEPI 9 Unmodified _VKDSSSEPI_ 0 0 0 REV__ENSG00000165959|ENST00000298912|CLMN REV__ENSG00000165959|ENST00000298912|CLMN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2451171875 2 481.245472 960.476391 0.065745 3.1639E-05 -0.18938 -9.1138E-05 -0.12364 -5.9499E-05 481.2453850569214 99.907 1.1514 95.774 95.302 96.454 -4.1328 125 32 6 0 0 0 0.2213 1 19740 19740 4.7159 0.2389 1 234470000 + 50796 17812 33717 33738 49746 49746 -0.005428329272717747 VKEALKYLN 9 Unmodified _VKEALKYLN_ 0 0 0 tr|U7SKQ7|U7SKQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02109PE=4SV=1 tr|U7SKQ7|U7SKQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02109PE=4SV=1 tr|U7SKQ7|U7SKQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02109PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21624755859375 3 359.881608 1076.623 -0.21977 -7.9092E-05 0.31226 0.00011238 0.092489 3.3285E-05 359.8816351786918 95.507 0.62449 91.457 91.168 91.793 -4.0496 39 17 3 0 0 0 0.60308 1 18685 18685 12.873 2.722 1 4353800 50797 25966 33718 33739 49747 49747 0.08774889028472899 VKEEKPGE 8 Unmodified _VKEEKPGE_ 0 0 0 REV__nc|nan|Q9NQ32-2|C11orf16 REV__nc|nan|Q9NQ32-2|C11orf16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2300109863281 2 458.242732 914.470912 -0.47622 -0.00021822 1.3083 0.00059952 0.83209 0.0003813 458.2431655603706 37.367 0.37876 34.898 34.772 35.151 -2.4688 14 10 2 0 0 0 8448 2 6896 6896;6937 6.2058 5.9543 1 824530 + 50798 18496 33719 33740 49748;49749 49748 0.010254882809135779 VKEEKPGE 8 Unmodified _VKEEKPGE_ 0 0 0 REV__nc|nan|Q9NQ32-2|C11orf16 REV__nc|nan|Q9NQ32-2|C11orf16 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2267761230469 2 458.242732 914.470912 0.039026 1.7883E-05 0.44459 0.00020373 0.48361 0.00022161 458.2427716618523 37.373 0.38198 35.025 34.856 35.238 -2.3479 18 10 2 0 0 0 8448 1 6642 6642 6.2058 0 1 978960 + 50799 18496 33719 33740 49750 49750 0.010254882809135779 VKEIRLHNV 9 Unmodified _VKEIRLHNV_ 0 0 0 REV__ENST00000540645.5_1_9:116823569-116838999:-|nuORF REV__ENST00000540645.5_1_9:116823569-116838999:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 369.5236511230469 3 369.892619 1106.65603 NaN NaN NaN NaN NaN NaN NaN 13.403 1 13.403 12.903 13.903 0 0 0 0 0.19631 1 1933 1933 0.073264 0 1 + 50800 22860 33720 33741 49751 49751 0.10696515871177326 VKELGHPTVR 10 Unmodified _VKELGHPTVR_ 0 0 0 REV__ENSG00000124171|ENST00000371610|PARD6B REV__ENSG00000124171|ENST00000371610|PARD6B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 379.5282897949219 3 379.224257 1134.65094 NaN NaN NaN NaN NaN NaN NaN 74.051 1 70.687 70.187 71.187 -3.3643 0 0 0 2.8426 1 14443 14443 3.8763 2.6615 1 + 50801 15755 33721 33742 49752 49752 0.08900212008552444 VKELKERSY 9 Unmodified _VKELKERSY_ 0 0 0 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3253173828125 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 66.29 1 62.793 62.293 63.293 -3.4965 0 0 0 0.19632 1 12422 12422 0.40827 0 1 + 50802 18990 33722 33743 49753 49753 0.06533086051808823 VKEQNFLY 8 Unmodified _VKEQNFLY_ 0 0 0 DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant;ENSG00000006634|ENST00000265728|DBF4 DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 521.1175537109375 2 520.7742 1039.53385 -0.61667 -0.00032115 1.0053 0.00052351 0.38858 0.00020236 520.774724343213 141.37 0.87665 136.39 135.96 136.84 -4.9877 43 24 2 0 0 0 1.0095 1 27236 27236 10.183 0 1 6099300 50803 784 33723 33744 49754 49754 0.015660540689623303 VKEQNFLY 8 Unmodified _VKEQNFLY_ 0 0 0 DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant;ENSG00000006634|ENST00000265728|DBF4 DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 520.7742 1039.53385 0.20902 0.00010885 0.16913 8.8076E-05 0.37814 0.00019693 520.7741879360357 136.62 0.89554 136.62 136.24 137.13 0 0.17688 -0.00022471 NaN 10.183 52 25 3 NaN NaN NaN NaN 0 NaN NaN 0 11004000 50804 784 33723 33744 0.015660540689623303 VKEQNFLY 8 Unmodified _VKEQNFLY_ 0 0 0 DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant;ENSG00000006634|ENST00000265728|DBF4 DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 520.7742 1039.53385 -0.18171 -9.4631E-05 0.53514 0.00027869 0.35343 0.00018405 520.774462068063 141.02 0.76212 136.37 136.02 136.78 -4.6493 -0.068594 0.00015651 NaN 10.183 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 6074700 50805 784 33723 33744 0.015660540689623303 VKEQNFLY 8 Unmodified _VKEQNFLY_ 0 0 0 DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant;ENSG00000006634|ENST00000265728|DBF4 DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 520.7742 1039.53385 0.31606 0.0001646 -0.076809 -4E-05 0.23925 0.0001246 520.7741162145962 141.26 0.83989 136.39 135.94 136.78 -4.8678 -0.05129 -0.00048086 NaN 10.183 41 23 2 NaN NaN NaN NaN 0 NaN NaN 0 4669900 50806 784 33723 33744 0.015660540689623303 VKEREAEFS 9 Unmodified _VKEREAEFS_ 0 0 0 REV__CPLX2|p.M55_E56insSF|1|0.05|ENSG00000145920|chr5:175879041-175879042|-/TCCTTT|inframe_insertion REV__CPLX2|p.M55_E56insSF|1|0.05|ENSG00000145920|chr5:175879041-175879042|-/TCCTTT|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.791015625 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 144.34 1 144.34 143.84 144.84 0 0 0 0 0.23508 1 28837 28837 10.824 0.024421 1 + 50807 13570 33724 33745 49755 49755 -0.0026405277033063612 VKERKKQLKK 10 Unmodified _VKERKKQLKK_ 0 0 0 ENSG00000126698|ENST00000263697|DNAJC8;ENST00000489277.5_1_1:28527761-28556683:-|nuORF ENSG00000126698|ENST00000263697|DNAJC8 ENSG00000126698|ENST00000263697|DNAJC8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.9778747558594 4 321.967311 1283.84014 -0.6063 -0.00019521 0.69012 0.0002222 0.083822 2.6988E-05 321.96749522752077 12.922 0.16899 12.922 12.828 12.997 0 8 4 3 0 0 0 0.91149 1 1827 1827 0 0 1 777390 50808 3440 33725 33746 49756 49756 0.20957284301857726 VKESWEPLEK 10 Unmodified _VKESWEPLEK_ 0 0 0 REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7518920898438 2 622.829703 1243.64485 NaN NaN NaN NaN NaN NaN NaN 150.66 1 145.93 145.43 146.43 -4.7323 0 0 0 0.22559 1 29926 29926 17.113 0.54702 1 + 50809 16155 33726 33747 49757 49757 0.032776489863636016 VKESWEPLEK 10 Unmodified _VKESWEPLEK_ 0 0 0 REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7532958984375 2 622.829703 1243.64485 NaN NaN NaN NaN NaN NaN NaN 151.56 1 146.81 146.31 147.31 -4.7523 0 0 0 0.22559 1 30113 30113 17.113 0 1 + 50810 16155 33726 33747 49758 49758 0.032776489863636016 VKETEARF 8 Unmodified _VKETEARF_ 0 0 0 nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;RNF216|p.R426Gfs*7|1|0.23|ENSG00000011275|chr7:5725381-5725381|T/-|frameshift_variant;RNF216|p.K414Nfs*19|1|0.24|ENSG00000011275|chr7:5725415-5725415|T/-|frameshift_variant;RNF216|p.S387Lfs*47|1|0.13|ENSG00000011275|chr7:5729492-5729493|-/GG|frameshift_variant nc|ENSG00000011275|Q9NWF9|RNF216 nc|ENSG00000011275|Q9NWF9|RNF216 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2650146484375 2 490.263999 978.513445 0.48439 0.00023748 -0.26982 -0.00013229 0.21456 0.00010519 490.2639075851975 81.641 0.6634 81.641 81.335 81.998 0 40 18 3 0 0 0 8448 1 15857 15857 10.074 1.9184 1 4103400 50811 1073 33727 33748 49759 49759 0.02332883409144415 VKETYWSVSHH 11 Unmodified _VKETYWSVSHH_ 0 0 0 REV__ENST00000586898.1_1_17:49269519-49270175:-|nuORF REV__ENST00000586898.1_1_17:49269519-49270175:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2262878417969 3 458.226326 1371.65715 NaN NaN NaN NaN NaN NaN NaN 139.57 1 139.57 139.07 140.07 0 0 0 0 0.22632 1 27748 27748 0.58532 0 1 + 50812 23270 33728 33749 49760 49760 -0.013813145505764624 VKEVRHLNE 9 Unmodified _VKEVRHLNE_ 0 0 0 REV__ENST00000578586.1_1_17:80350276-80350507:-|nuORF REV__ENST00000578586.1_1_17:80350276-80350507:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2119445800781 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 56.985 1 56.985 56.485 57.485 0 0 0 0 0.19669 1 10888 10888 0.37959 0 1 + 50813 18730 33729 33750 49761 49761 0.05815335111856257 VKEVRHLNE 9 Unmodified _VKEVRHLNE_ 0 0 0 REV__ENST00000578586.1_1_17:80350276-80350507:-|nuORF REV__ENST00000578586.1_1_17:80350276-80350507:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2118835449219 3 375.212128 1122.61456 NaN NaN NaN NaN NaN NaN NaN 59.087 1 59.087 58.587 59.587 0 0 0 0 0.23508 1 11317 11317 6.6304 1.3335 1 + 50814 18730 33729 33750 49762 49762 0.05815335111856257 VKFALDTVS 9 Unmodified _VKFALDTVS_ 0 0 0 REV__ENST00000459625.5_1_12:48179068-48183703:-|nuORF REV__ENST00000459625.5_1_12:48179068-48183703:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27667236328125 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 144.7 1 140.03 139.53 140.53 -4.6694 0 0 0 0.23277 1 28660 28660 13.906 0.39817 1 + 50815 14148 33730 33751 49763 49763 0.048469382116991255 VKFDQNPSFY 10 Unmodified _VKFDQNPSFY_ 0 0 0 REV__nc|ENSG00000114455|Q9UM44-2|HHLA2 REV__nc|ENSG00000114455|Q9UM44-2|HHLA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7766723632812 2 622.800946 1243.58734 NaN NaN NaN NaN NaN NaN NaN 157.04 1 152.25 151.75 152.75 -4.7885 0 0 0 0.22588 1 31228 31228 10.824 3.5347 1 + 50816 15376 33731 33752 49764 49764 -0.024711932191848973 VKFDRQSNT 9 Unmodified _VKFDRQSNT_ 0 0 0 REV__nc|ENSG00000133119|P40938-2|RFC3 REV__nc|ENSG00000133119|P40938-2|RFC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7716674804688 2 547.783087 1093.55162 0.072763 3.9858E-05 -2.4772 -0.001357 -2.4045 -0.0013171 547.7819688738944 133.93 0.58176 129.06 128.65 129.23 -4.8726 26 16 2 0 0 0 0.5685 1 25741 25741 15.248 0.66679 1 2179300 + 50817 16158 33732 33753 49765 49765 0.008587693238041538 VKFESKERT 9 Unmodified _VKFESKERT_ 0 0 0 nc|ENSG00000182010|Q8IZC4-3|RTKN2;RTKN2|p.I450Lfs*67|1|0.43|ENSG00000182010|chr10:62198390-62198390|T/-|frameshift_variant;nc|ENSG00000182010|Q8IZC4-2|RTKN2;ENSG00000182010|ENST00000373789|RTKN2 nc|ENSG00000182010|Q8IZC4-3|RTKN2 nc|ENSG00000182010|Q8IZC4-3|RTKN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2125549316406 3 375.208384 1122.60332 0.051707 1.9401E-05 -0.20865 -7.8288E-05 -0.15694 -5.8887E-05 375.2082743735327 52.657 0.42681 49.57 49.299 49.726 -3.0876 17 11 2 0 0 0 0.6109 1 9644 9644 0.073264 0 1 1158500 50818 6757 33733 33754 49766 49766 0.04692513017721467 VKFHRIRGPCP 11 Unmodified _VKFHRIRGPCP_ 0 0 0 REV__ENSG00000145192|ENST00000411641|AHSG REV__ENSG00000145192|ENST00000411641|AHSG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2265930175781 3 437.24852 1308.72373 NaN NaN NaN NaN NaN NaN NaN 93.409 1 93.409 92.909 93.909 0 0 0 0 0.22632 1 18276 18276 3.0723 3.0717 1 + 50819 16825 33734 33755 49767 49767 0.08171642530351164 VKFQRRLF 8 Unmodified _VKFQRRLF_ 0 0 0 REV__ENSG00000101327|ENST00000217305|PDYN REV__ENSG00000101327|ENST00000217305|PDYN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.3326416015625 2 547.335093 1092.65563 NaN NaN NaN NaN NaN NaN NaN 157.66 1 152.87 152.37 153.37 -4.7885 0 0 0 0.2343 1 31357 31357 1.7423 0 1 + 50820 14777 33735 33756 49768 49768 0.1130114094196415 VKFRVGPID 9 Unmodified _VKFRVGPID_ 0 0 0 REV__ENST00000429775.2_1_X:70182861-70183140:+|nuORF REV__ENST00000429775.2_1_X:70182861-70183140:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.1698303222656 3 344.206315 1029.59712 NaN NaN NaN NaN NaN NaN NaN 133.53 1 128.66 128.16 129.16 -4.8726 0 0 0 0.23508 1 25657 25657 1.0715 0 1 + 50821 19032 33736 33757 49769 49769 0.08350039576839663 VKFVKSNAIVV 11 Unmodified _VKFVKSNAIVV_ 0 0 0 tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1 tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1 tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2890625 2 602.376623 1202.73869 NaN NaN NaN NaN NaN NaN NaN 136.05 1 136.05 135.55 136.55 0 0 0 0 0.22632 1 26955 26955 0.11104 0.079632 1 50822 26186 33737 33758 49770 49770 0.14543412879288553 VKGKKIKL 8 Unmodified _VKGKKIKL_ 0 0 0 tr|U7STK2|U7STK2_FUSNU16SrRNA(-N2)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01088PE=4SV=1 tr|U7STK2|U7STK2_FUSNU16SrRNA(-N2)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01088PE=4SV=1 tr|U7STK2|U7STK2_FUSNU16SrRNA(-N2)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01088PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.2221374511719 3 305.223417 912.648422 NaN NaN NaN NaN NaN NaN NaN 175.15 1 170.26 169.76 170.76 -4.8916 0 0 0 0.21486 1 34907 34907 3.9444 0 1 50823 26157 33738 33759 49771 49771 0.1886040834153846 VKGTRTTS 8 Unmodified _VKGTRTTS_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2432861328125 2 425.243067 848.47158 NaN NaN NaN NaN NaN NaN NaN 97.528 1 93.294 92.794 93.794 -4.2348 0 0 0 0.23899 1 18630 18630 1.3295 0 1 50824 4752 33739 33760 49772 49772 0.041283277206161983 VKHDRDNP 8 Unmodified _VKHDRDNP_ 0 0 0 REV__nc|ENSG00000140284|O14975-2|SLC27A2 REV__nc|ENSG00000140284|O14975-2|SLC27A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 328.0265808105469 3 327.50179 979.483542 -0.57217 -0.00018739 0.57474 0.00018823 0.0025713 8.4209E-07 327.5018931894548 13.881 0.20803 13.881 13.792 14 0 13 5 3 0 0 0 1.0271 1 2024 2024 0.40072 0 1 1128600 + 50825 16566 33740 33761 49773 49773 -0.00702055536203261 VKHKGIIAE 9 Unmodified _VKHKGIIAE_ 0 0 0 REV__tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1 REV__tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.2069396972656 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 119.93 1 119.93 119.43 120.43 0 0 0 0 0.23508 1 23636 23636 4.897 0 1 + 50826 25157 33741 33762 49774 49774 0.10006039576853709 VKHLLICPR 9 Unmodified _VKHLLICPR_ 0 0 0 ENST00000381279.3_1_6:139981105-139981588:+|nuORF ENST00000381279.3_1_6:139981105-139981588:+|nuORF ENST00000381279.3_1_6:139981105-139981588:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2130432128906 3 360.223311 1077.6481 NaN NaN NaN NaN NaN NaN NaN 30.147 1 28.254 27.754 28.754 -1.8928 0 0 0 0.19631 1 5154 5154 0.20686 0.20686 1 50827 9326 33742 33763 49775 49775 0.11238665350060728 VKHLRRIILI 10 Unmodified _VKHLRRIILI_ 0 0 0 REV__nc|ENSG00000080503|P51531-2|SMARCA2;REV__SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant REV__nc|ENSG00000080503|P51531-2|SMARCA2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7600708007812 2 630.934974 1259.8554 NaN NaN NaN NaN NaN NaN NaN 85.329 1 81.42 80.92 81.92 -3.9093 0 0 0 2.8426 1 16228 16228 0.0013812 0 1 + 50828 14409;15895 33743 33764 49776 49776 0.23586195889743067 VKHLRRIILI 10 Unmodified _VKHLRRIILI_ 0 0 0 REV__nc|ENSG00000080503|P51531-2|SMARCA2;REV__SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant REV__nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7631225585938 2 630.934974 1259.8554 0.40759 0.00025716 0.83769 0.00052853 1.2453 0.00078569 630.9373498425739 129.82 0.10709 125.04 124.97 125.07 -4.7725 4 2 2 0 0 0 1.1347 1 24979 24979 0 0 1 766500 + 50829 14409;15895 33743 33764 49777 49777 0.23586195889743067 VKIERVGK 8 Unmodified _VKIERVGK_ 0 0 0 nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4 nc|ENSG00000112769|Q16363-2|LAMA4 nc|ENSG00000112769|Q16363-2|LAMA4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1643371582031 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 11.396 1 10.492 9.9924 10.992 -0.90401 0 0 0 0.2396 1 1507 1507 0.30703 0 1 50830 2710 33744 33765 49778 49778 0.1198605692242154 VKIHLKVLE 9 Unmodified _VKIHLKVLE_ 0 0 0 GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2066650390625 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 121.27 1 121.27 120.77 121.77 0 0 0 0 0.19636 1 23902 23902 0.40827 0.335 1 50831 11858 33745 33766 49779 49779 0.15527758679127146 VKIHLKVLE 9 Unmodified _VKIHLKVLE_ 0 0 0 GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2018737792969 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 117.01 1 112.43 111.93 112.93 -4.5815 0 0 0 0.23508 1 22451 22451 1.0715 0 1 50832 11858 33745 33766 49780 49780 0.15527758679127146 VKIHLKVLE 9 Unmodified _VKIHLKVLE_ 0 0 0 GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2161560058594 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 176.75 1 171.88 171.38 172.38 -4.8739 0 0 0 0.23508 1 35167 35167 0.26902 0 1 50833 11858 33745 33766 49781 49781 0.15527758679127146 VKIHLKVLE 9 Unmodified _VKIHLKVLE_ 0 0 0 GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20703125 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 120.21 1 115.74 115.24 116.24 -4.467 0 0 0 0.19631 1 23144 23144 0.073264 0 1 50834 11858 33745 33766 49782 49782 0.15527758679127146 VKIHLKVLE 9 Unmodified _VKIHLKVLE_ 0 0 0 GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2010803222656 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 120.27 1 115.8 115.3 116.3 -4.467 0 0 0 0.23508 1 23157 23157 0.96228 0.72643 1 50835 11858 33745 33766 49783 49783 0.15527758679127146 VKIKIYKLLK 10 Unmodified _VKIKIYKLLK_ 0 0 0 REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1 REV__tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 623.305908203125 2 623.436484 1244.85842 NaN NaN NaN NaN NaN NaN NaN 170.23 1 165.31 164.81 165.81 -4.9182 0 0 0 2.8426 1 33651 33651 0.0013812 0.0008168 1 + 50836 25263 33746 33767 49784 49784 0.245780262238668 VKIKLHKI 8 Unmodified _VKIKLHKI_ 0 0 0 MTIF2|p.G590R|1|0.39|ENSG00000085760|chr2:55240113-55240113|C/T|missense_variant;ENSG00000085760|ENST00000263629|MTIF2 MTIF2|p.G590R|1|0.39|ENSG00000085760|chr2:55240113-55240113|C/T|missense_variant MTIF2|p.G590R|1|0.39|ENSG00000085760|chr2:55240113-55240113|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2657775878906 2 489.844762 977.674971 NaN NaN NaN NaN NaN NaN NaN 137.95 1 133.03 132.53 133.53 -4.9216 0 0 0 0.2396 1 26526 26526 0.12286 0 1 50837 1682 33747 33768 49785 49785 0.18524097232875647 VKIKLKIKLIL 11 Unmodified _VKIKLKIKLIL_ 0 0 0 METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21673583984375 3 436.995015 1307.96321 NaN NaN NaN NaN NaN NaN NaN 133.09 1 128.45 127.95 128.95 -4.6399 0 0 0 0.23698 1 26238 26238 0.094841 0.094841 1 50838 12135 33748 33769 49786 49786 0.3215514770045047 VKILKRESG 9 Unmodified _VKILKRESG_ 0 0 0 PHF3|p.I876Yfs*26|1|0.08|ENSG00000118482|chr6:63694705-63694705|A/-|frameshift_variant;PHF3|p.R971Sfs*6|1|0.27|ENSG00000118482|chr6:63698526-63698527|-/T|frameshift_variant;PHF3|p.N993Tfs*9|1|0.33|ENSG00000118482|chr6:63698597-63698597|A/-|frameshift_variant;PHF3|p.V1137*|1|0.32|ENSG00000118482|chr6:63706063-63706063|A/-|frameshift_variant;PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant;PHF3|p.F1399Lfs*30|1|0.31|ENSG00000118482|chr6:63711780-63711780|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*10|2|0.05|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3 PHF3|p.I876Yfs*26|1|0.08|ENSG00000118482|chr6:63694705-63694705|A/-|frameshift_variant PHF3|p.I876Yfs*26|1|0.08|ENSG00000118482|chr6:63694705-63694705|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.8849792480469 3 343.885353 1028.63423 NaN NaN NaN NaN NaN NaN NaN 9.8357 1 8.7421 8.2421 9.2421 -1.0936 0 0 0 0.23508 1 1076 1076 0.23584 0 1 50839 3037 33749 33770 49787 49787 0.1210571112260368 VKIVLKEKH 9 Unmodified _VKIVLKEKH_ 0 0 0 ENSG00000054938|ENST00000376332|CHRDL2;nc|ENSG00000054938|Q6WN34-2|CHRDL2 ENSG00000054938|ENST00000376332|CHRDL2 ENSG00000054938|ENST00000376332|CHRDL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.35986328125 2 547.358234 1092.70191 NaN NaN NaN NaN NaN NaN NaN 8.0931 1 7.414 6.914 7.914 -0.67913 0 0 0 0.19626 1 805 805 0.073264 0 1 50840 1269 33750 33771 49788 49788 0.15927161053423333 VKKAFGFG 8 Unmodified _VKKAFGFG_ 0 0 0 tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1 tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1 tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.24859619140625 2 427.250163 852.485774 NaN NaN NaN NaN NaN NaN NaN 140.72 1 135.85 135.35 136.35 -4.8678 0 0 0 0.2343 1 27139 27139 0.25148 0.17821 1 50841 26125 33751 33772 49789 49789 0.053630249395723695 VKKAKPSKKFV 11 Unmodified _VKKAKPSKKFV_ 0 0 0 REV__ENSG00000178177|ENST00000635767|LCORL REV__ENSG00000178177|ENST00000635767|LCORL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.768798828125 2 630.41354 1258.81253 0.41169 0.00025954 -3.9812 -0.0025098 -3.5695 -0.0022503 630.411010640417 164.28 0.14024 164.28 164.19 164.33 0 5 3 2 0 0 0 0.94227 1 33207 33207 4.5289 2.8762 1 12102000 + 50842 18591 33752 33773 49790 49790 0.1934738104164353 VKKFEELEVE 10 Unmodified _VKKFEELEVE_ 0 0 0 REV__SYCP1|p.L436F|1|0.24|ENSG00000198765|chr1:114895497-114895497|G/T|missense_variant REV__SYCP1|p.L436F|1|0.24|ENSG00000198765|chr1:114895497-114895497|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1781921386719 4 313.172319 1248.66017 -0.59626 -0.00018673 -0.94896 -0.00029719 -1.5452 -0.00048392 313.1719940008903 14.595 0.52841 14.595 14.279 14.807 0 46 14 4 0 0 0 0.76603 1 2162 2162 0.69767 0 1 6149200 + 50843 24756 33753 33774 49791 49791 0.045785157835553036 VKKFEELEVE 10 Unmodified _VKKFEELEVE_ 0 0 0 REV__SYCP1|p.L436F|1|0.24|ENSG00000198765|chr1:114895497-114895497|G/T|missense_variant REV__SYCP1|p.L436F|1|0.24|ENSG00000198765|chr1:114895497-114895497|G/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 313.172319 1248.66017 -0.59626 -0.00018673 -0.94896 -0.00029719 -1.5452 -0.00048392 313.1719940008903 14.595 0.52841 14.595 14.279 14.807 0 0.094985 9.2079E-05 NaN 0.69767 46 14 4 NaN NaN NaN NaN 0 NaN NaN 0 6149200 + 50844 24756 33753 33774 0.045785157835553036 VKKFEELEVE 10 Unmodified _VKKFEELEVE_ 0 0 0 REV__SYCP1|p.L436F|1|0.24|ENSG00000198765|chr1:114895497-114895497|G/T|missense_variant REV__SYCP1|p.L436F|1|0.24|ENSG00000198765|chr1:114895497-114895497|G/T|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 313.172319 1248.66017 -0.82099 -0.00025711 -1.0001 -0.00031319 -1.8211 -0.00057031 313.17197509079006 15.635 0.55505 14.419 14.03 14.585 -1.2159 -0.081258 2.8051E-05 NaN 0.69767 53 15 4 NaN NaN NaN NaN 0 NaN NaN 0 5484600 + 50845 24756 33753 33774 0.045785157835553036 VKKFEELEVE 10 Unmodified _VKKFEELEVE_ 0 0 0 REV__SYCP1|p.L436F|1|0.24|ENSG00000198765|chr1:114895497-114895497|G/T|missense_variant REV__SYCP1|p.L436F|1|0.24|ENSG00000198765|chr1:114895497-114895497|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 313.172319 1248.66017 -0.55836 -0.00017486 -1.1271 -0.00035297 -1.6854 -0.00052783 313.17194713065953 15.708 0.54217 14.486 14.067 14.609 -1.2219 -0.013728 -0.00013103 NaN 0.69767 50 15 4 NaN NaN NaN NaN 0 NaN NaN 0 5785800 + 50846 24756 33753 33774 0.045785157835553036 VKKFIMVY 8 Unmodified _VKKFIMVY_ 0 0 0 REV__ENST00000572148.1_1_17:4863453-4863890:-|nuORF REV__ENST00000572148.1_1_17:4863453-4863890:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.9974060058594 3 343.205146 1026.59361 -0.19086 -6.5503E-05 0.14522 4.984E-05 -0.045637 -1.5663E-05 343.2050795641342 31.472 0.45962 29.323 29.091 29.551 -2.1483 16 12 2 0 0 0 1.0277 1 5458 5458 0.40072 0.40072 1 422400 + 50847 23172 33754 33775 49792 49792 0.0813765347863864 VKKFIMVY 8 Unmodified _VKKFIMVY_ 0 0 0 REV__ENST00000572148.1_1_17:4863453-4863890:-|nuORF REV__ENST00000572148.1_1_17:4863453-4863890:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 343.205146 1026.59361 -0.317 -0.0001088 0.079032 2.7124E-05 -0.23797 -8.1672E-05 343.20511021937546 29.368 0.27847 29.368 29.263 29.541 0 0.022187 -3.9915E-05 NaN 0.40072 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 841530 + 50848 23172 33754 33775 0.0813765347863864 VKKKKFKL 8 Unmodified _VKKKKFKL_ 0 0 0 nc|ENSG00000053918|P51787-2|KCNQ1;ENSG00000053918|ENST00000155840|KCNQ1;KCNQ1-GALNTL6|1|fusion nc|ENSG00000053918|P51787-2|KCNQ1 nc|ENSG00000053918|P51787-2|KCNQ1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 340.2419128417969 3 340.2427 1017.70627 NaN NaN NaN NaN NaN NaN NaN 143.04 1 138.38 137.88 138.88 -4.656 0 0 0 0.21486 1 28280 28280 0 0 1 50849 1260 33755 33776 49793 49793 0.1981267026696969 VKKKKIKHEIK 11 Unmodified _VKKKKIKHEIK_ 0 0 0 CSNK2A3|p.R80H|1|0.2|ENSG00000254598|chr11:11352881-11352881|C/T|missense_variant CSNK2A3|p.R80H|1|0.2|ENSG00000254598|chr11:11352881-11352881|C/T|missense_variant CSNK2A3|p.R80H|1|0.2|ENSG00000254598|chr11:11352881-11352881|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2322082519531 3 460.313406 1377.91839 NaN NaN NaN NaN NaN NaN NaN 91.008 1 91.008 90.508 91.508 0 0 0 0 0.22632 1 17780 17780 0 0 1 50850 732 33756 33777 49794 49794 0.24454716887112227 VKKKKKKKHKE 11 Unmodified _VKKKKKKKHKE_ 0 0 0 RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant;PTPN12-RSBN1L|7|fusion;ENSG00000187257|ENST00000334955|RSBN1L;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 704.9780883789062 2 704.97737 1407.94019 NaN NaN NaN NaN NaN NaN NaN 175.94 1 175.94 175.44 176.44 0 0 0 0 0.22632 1 36448 36448 0 0 1 50851 7104 33757 33778 49795 49795 0.25253521635659126 VKKKKKKQG 9 Unmodified _VKKKKKKQG_ 0 0 0 REV__KRIT1|p.R49K|1|0.54|ENSG00000001631|chr7:92241109-92241109|C/T|missense_variant REV__KRIT1|p.R49K|1|0.54|ENSG00000001631|chr7:92241109-92241109|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.54888916015625 3 357.916876 1070.7288 -2.2677 -0.00081166 -0.278 -9.95E-05 -2.5457 -0.00091116 357.9167404926772 15.622 0.20965 14.269 14.166 14.376 -1.3534 6 5 2 0 0 0 0.88413 1 2167 2167 1.0715 0 1 192460 + 50852 23735 33758 33779 49796 49796 0.1962626966460448 VKKKKRGP 8 Unmodified _VKKKKRGP_ 0 0 0 REV__nc|ENSG00000170004|Q12873-3|CHD3 REV__nc|ENSG00000170004|Q12873-3|CHD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1599426269531 3 314.218666 939.634169 NaN NaN NaN NaN NaN NaN NaN 47.052 1 47.052 46.552 47.552 0 0 0 0 0.2396 1 8868 8868 0.12286 0.12286 1 + 50853 24159 33759 33780 49797 49797 0.16193755913263885 VKKKTRKA 8 Unmodified _VKKKTRKA_ 0 0 0 ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENST00000420969.1_1_2:162357792-162360000:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.2217102050781 3 320.222188 957.644734 NaN NaN NaN NaN NaN NaN NaN 133.88 1 129.24 128.74 129.74 -4.6399 0 0 0 0.21486 1 26400 26400 0 0 1 50854 9664 33760 33781 49798 49798 0.16421738567680677 VKKKTRKA 8 Unmodified _VKKKTRKA_ 0 0 0 ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENST00000420969.1_1_2:162357792-162360000:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.2219543457031 3 320.222188 957.644734 NaN NaN NaN NaN NaN NaN NaN 94.748 1 90.557 90.057 91.057 -4.1911 0 0 0 0.21486 1 18081 18081 0 0 1 50855 9664 33760 33781 49799 49799 0.16421738567680677 VKKKTRKA 8 Unmodified _VKKKTRKA_ 0 0 0 ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENST00000420969.1_1_2:162357792-162360000:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.20562744140625 3 320.222188 957.644734 NaN NaN NaN NaN NaN NaN NaN 108.18 1 104.05 103.55 104.55 -4.135 0 0 0 0.21486 1 20815 20815 0 0 1 50856 9664 33760 33781 49800 49800 0.16421738567680677 VKKKTRKA 8 Unmodified _VKKKTRKA_ 0 0 0 ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENST00000420969.1_1_2:162357792-162360000:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.2060852050781 3 320.222188 957.644734 NaN NaN NaN NaN NaN NaN NaN 176.97 1 172.07 171.57 172.57 -4.9008 0 0 0 0.21486 1 35289 35289 0 0 1 50857 9664 33760 33781 49801 49801 0.16421738567680677 VKKKTTSVI 9 Unmodified _VKKKTTSVI_ 0 0 0 PEAK1|p.E655K|1|0.32|ENSG00000173517|chr15:77179964-77179964|C/T|missense_variant PEAK1|p.E655K|1|0.32|ENSG00000173517|chr15:77179964-77179964|C/T|missense_variant PEAK1|p.E655K|1|0.32|ENSG00000173517|chr15:77179964-77179964|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.5467224121094 3 335.221853 1002.64373 NaN NaN NaN NaN NaN NaN NaN 8.6879 1 8.6879 8.1879 9.1879 0 0 0 0 0.19635 1 934 934 0 0 1 50858 12772 33761 33782 49802 49802 0.14251479408108025 VKKKTTSVI 9 Unmodified _VKKKTTSVI_ 0 0 0 PEAK1|p.E655K|1|0.32|ENSG00000173517|chr15:77179964-77179964|C/T|missense_variant PEAK1|p.E655K|1|0.32|ENSG00000173517|chr15:77179964-77179964|C/T|missense_variant PEAK1|p.E655K|1|0.32|ENSG00000173517|chr15:77179964-77179964|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 335.0544738769531 3 335.221853 1002.64373 NaN NaN NaN NaN NaN NaN NaN 8.5892 1 7.5247 7.0247 8.0247 -1.0645 0 0 0 0.23508 1 858 858 0 0 1 50859 12772 33761 33782 49803 49803 0.14251479408108025 VKKKTTSVI 9 Unmodified _VKKKTTSVI_ 0 0 0 PEAK1|p.E655K|1|0.32|ENSG00000173517|chr15:77179964-77179964|C/T|missense_variant PEAK1|p.E655K|1|0.32|ENSG00000173517|chr15:77179964-77179964|C/T|missense_variant PEAK1|p.E655K|1|0.32|ENSG00000173517|chr15:77179964-77179964|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 335.2052307128906 3 335.221853 1002.64373 NaN NaN NaN NaN NaN NaN NaN 128.84 1 124.03 123.53 124.53 -4.817 0 0 0 0.23508 1 24733 24733 0 0 1 50860 12772 33761 33782 49804 49804 0.14251479408108025 VKKLGKKL 8 Unmodified _VKKLGKKL_ 0 0 0 REV__tr|U7STZ9|U7STZ9_FUSNURibosomebiogenesisGTPaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01260PE=3SV=1 REV__tr|U7STZ9|U7STZ9_FUSNURibosomebiogenesisGTPaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01260PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.9269714355469 3 305.223417 912.648422 NaN NaN NaN NaN NaN NaN NaN 12.017 1 12.017 11.517 12.517 0 0 0 0 0.21486 1 1642 1642 1.6526 0 1 + 50861 25133 33762 33783 49805 49805 0.18860408341561197 VKKLMRKY 8 Unmodified _VKKLMRKY_ 0 0 0 ENSG00000101265|ENST00000379400|RASSF2 ENSG00000101265|ENST00000379400|RASSF2 ENSG00000101265|ENST00000379400|RASSF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2640991210938 2 533.333704 1064.65286 NaN NaN NaN NaN NaN NaN NaN 152.38 1 147.2 146.7 147.7 -5.1759 0 0 0 0.21486 1 29533 29533 2.5775 0.27475 1 50862 2052 33763 33784 49806 49806 0.1231154949282427 VKKNILWGK 9 Unmodified _VKKNILWGK_ 0 0 0 REV__tr|U7T5S7|U7T5S7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00069PE=4SV=1 REV__tr|U7T5S7|U7T5S7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00069PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7695922851562 2 543.345126 1084.6757 NaN NaN NaN NaN NaN NaN NaN 18.171 1 16.656 16.156 17.156 -1.5148 0 0 0 0.23508 1 2678 2678 1.8442 0 1 + 50863 25423 33764 33785 49807 49807 0.1367489188194213 VKKPKKPL 8 Unmodified _VKKPKKPL_ 0 0 0 REV__ENSG00000197299|ENST00000355112|BLM REV__ENSG00000197299|ENST00000355112|BLM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 469.3701171875 2 469.331488 936.648422 NaN NaN NaN NaN NaN NaN NaN 14.744 1 13.571 13.071 14.071 -1.173 0 0 0 0.2396 1 2017 2017 0.30703 0 1 + 50864 19320 33765 33786 49808 49808 0.17756408341540464 VKKREKKRKKK 11 Unmodified _VKKREKKRKKK_ 0 0 0 REV__ENST00000535284.1_1_16:57095655-57095901:+|nuORF REV__ENST00000535284.1_1_16:57095655-57095901:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 486.0036926269531 3 486.003455 1454.98853 NaN NaN NaN NaN NaN NaN NaN 138.95 1 134.31 133.81 134.81 -4.6439 0 0 0 0.22632 1 27439 27439 0.094841 0.087559 1 + 50865 22809 33766 33787 49809 49809 0.2792401527556194 VKKREKKRKKK 11 Unmodified _VKKREKKRKKK_ 0 0 0 REV__ENST00000535284.1_1_16:57095655-57095901:+|nuORF REV__ENST00000535284.1_1_16:57095655-57095901:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 728.4161987304688 2 728.501544 1454.98853 NaN NaN NaN NaN NaN NaN NaN 171.4 1 166.48 165.98 166.98 -4.9149 0 0 0 0.22632 1 33942 33942 0 0 1 + 50866 22809 33766 33787 49810 49810 0.2792401527556194 VKKRRKKKK 9 Unmodified _VKKRRKKKK_ 0 0 0 REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 400.7588806152344 3 400.290936 1197.85098 NaN NaN NaN NaN NaN NaN NaN 157.79 1 152.52 152.02 153.02 -5.2712 0 0 0 0.19635 1 30609 30609 0 0 1 + 50867 22093 33767 33788 49811 49811 0.2599673146680743 VKKSPSPGY 9 Unmodified _VKKSPSPGY_ 0 0 0 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76800537109375 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 132.32 1 127.47 126.97 127.97 -4.8527 0 0 0 0.23508 1 25417 25417 11.64 3.047 1 50868 4208 33768 33789 49812 49812 0.040980714145121055 VKKVHLQK 8 Unmodified _VKKVHLQK_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1;ESPL1|p.Q1311Rfs*21|1|0.46|ENSG00000135476|chr12:53286668-53286669|AG/-|frameshift_variant ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2650146484375 2 490.324194 978.633835 NaN NaN NaN NaN NaN NaN NaN 176.54 1 176.54 176.04 177.04 0 0 0 0 0.2396 1 36573 36573 0.0082765 0 1 50869 3928 33769 33790 49813 49813 0.14366336193415918 VKKWWNKVHRK 11 Unmodified _VKKWWNKVHRK_ 0 0 0 REV__ENST00000397195.9_1_17:2588401-2588581:+|nuORF REV__ENST00000397195.9_1_17:2588401-2588581:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 503.6055603027344 3 503.636883 1507.88882 NaN NaN NaN NaN NaN NaN NaN 159.57 1 154.77 154.27 155.27 -4.7952 0 0 0 0.22632 1 31725 31725 0.094841 0 1 + 50870 21297 33770 33791 49814 49814 0.1551919766161518 VKLALPVL 8 Unmodified _VKLALPVL_ 0 0 0 REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.78033447265625 2 426.799489 851.584425 NaN NaN NaN NaN NaN NaN NaN 7.272 1 6.2274 5.7274 6.7274 -1.0446 0 0 0 0.2396 1 605 605 0.30703 0 1 + 50871 19534 33771 33792 49815 49815 0.15269628184591966 VKLALPVL 8 Unmodified _VKLALPVL_ 0 0 0 REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 426.79791259765625 2 426.799489 851.584425 NaN NaN NaN NaN NaN NaN NaN 7.4459 1 6.4311 5.9311 6.9311 -1.0148 0 0 0 0.2396 1 600 600 0.30703 0 1 + 50872 19534 33771 33792 49816 49816 0.15269628184591966 VKLFTKIIIK 10 Unmodified _VKLFTKIIIK_ 0 0 0 REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1 REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2749633789062 2 601.915384 1201.81622 NaN NaN NaN NaN NaN NaN NaN 43.614 1 40.894 40.394 41.394 -2.72 0 0 0 0.22588 1 8179 8179 0.40072 0.40072 1 + 50873 24964 33772 33793 49817 49817 0.22338050815505994 VKLKKIVTL 9 Unmodified _VKLKKIVTL_ 0 0 0 nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8|DNAH14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 347.9181213378906 3 347.917994 1040.73215 NaN NaN NaN NaN NaN NaN NaN 9.4854 1 9.4854 8.9854 9.9854 0 0 0 0 0.23508 1 1101 1101 0 0 1 50874 7016;12518 33773 33794 49818 49818 0.2134151971861229 VKLLKLVKKV 10 Unmodified _VKLLKLVKKV_ 0 0 0 nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13 nc|ENSG00000179869|Q86UQ4-4|ABCA13 nc|ENSG00000179869|Q86UQ4-4|ABCA13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 584.3184204101562 2 584.431202 1166.84785 NaN NaN NaN NaN NaN NaN NaN 172.82 1 172.82 172.32 173.32 0 0 0 0 0.22588 1 35699 35699 0 0 1 50875 9 33774 33795 49819 49819 0.27110043569427944 VKLPKGKRKKK 11 Unmodified _VKLPKGKRKKK_ 0 0 0 SLC39A10|p.R238Gfs*84|1|0.35|ENSG00000196950|chr2:195680745-195680745|A/-|frameshift_variant;ENSG00000196950|ENST00000359634|SLC39A10;ENST00000465851.1_1_2:196545249-196581758:+|nuORF SLC39A10|p.R238Gfs*84|1|0.35|ENSG00000196950|chr2:195680745-195680745|A/-|frameshift_variant SLC39A10|p.R238Gfs*84|1|0.35|ENSG00000196950|chr2:195680745-195680745|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2212219238281 3 437.309996 1308.90816 NaN NaN NaN NaN NaN NaN NaN 70.753 1 67.504 67.004 68.004 -3.2492 0 0 0 0.23698 1 13773 13773 0.094841 0 1 50876 7319 33775 33796 49820 49820 0.26606153952525347 VKLQKTSRS 9 Unmodified _VKLQKTSRS_ 0 0 0 nc|ENSG00000163618|Q9ULU8-2|CADPS;nc|ENSG00000163618|Q9ULU8-3|CADPS;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS nc|ENSG00000163618|Q9ULU8-2|CADPS nc|ENSG00000163618|Q9ULU8-2|CADPS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 349.5072326660156 3 349.548741 1045.62439 NaN NaN NaN NaN NaN NaN NaN 19.376 1 17.74 17.24 18.24 -1.6351 0 0 0 0.19622 1 2921 2921 0.073264 0 1 50877 5447 33776 33797 49821 49821 0.1034052311722462 VKLVKKVKKL 10 Unmodified _VKLVKKVKKL_ 0 0 0 ENST00000496806.2_1_6:87865339-87969852:+|nuORF ENST00000496806.2_1_6:87865339-87969852:+|nuORF ENST00000496806.2_1_6:87865339-87969852:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 591.9349975585938 2 591.936651 1181.85875 NaN NaN NaN NaN NaN NaN NaN 153.48 1 153.48 152.98 153.98 0 0 0 0 0.22588 1 30753 30753 0.40072 0 1 50878 10584 33777 33798 49822 49822 0.2750944594374687 VKLVPKIKP 9 Unmodified _VKLVPKIKP_ 0 0 0 nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF nc|ENSG00000101596|A6NHR9-2|SMCHD1 nc|ENSG00000101596|A6NHR9-2|SMCHD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.2436218261719 3 341.242589 1020.70594 NaN NaN NaN NaN NaN NaN NaN 125.57 1 120.97 120.47 121.47 -4.5984 0 0 0 0.23508 1 24757 24757 0.26902 0 1 50879 2076 33778 33799 49823 49823 0.196412505471244 VKMLSPGGDWN 11 Unmodified _VKMLSPGGDWN_ 0 0 0 REV__ENST00000444775.2_1_7:38357478-38357607:-|nuORF REV__ENST00000444775.2_1_7:38357478-38357607:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.28173828125 2 602.294973 1202.57539 0.39194 0.00023606 -2.3533 -0.0014174 -1.9614 -0.0011813 602.795491824708 139.9 0.1349 139.9 139.78 139.91 0 5 3 2 0 0 0 0.77527 1 27806 27806 6.6304 1.3335 1 2448900 + 50880 21742 33779 33800 49824 49824 -0.017791332340266308 VKMLSPGGDWN 11 Unmodified _VKMLSPGGDWN_ 0 0 0 REV__ENST00000444775.2_1_7:38357478-38357607:-|nuORF REV__ENST00000444775.2_1_7:38357478-38357607:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 602.294973 1202.57539 0.39194 0.00023606 -2.3533 -0.0014174 -1.9614 -0.0011813 602.795491824708 139.9 0.1349 139.9 139.78 139.91 0 0 0 NaN 6.6304 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2448900 + 50881 21742 33779 33800 -0.017791332340266308 VKMVASVCM 9 Unmodified _VKMVASVCM_ 0 0 0 REV__ENST00000498825.1_1_10:12214695-12214857:-|nuORF REV__ENST00000498825.1_1_10:12214695-12214857:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.1377258300781 3 323.163965 966.470065 0.60869 0.00019671 -0.8987 -0.00029043 -0.29002 -9.3723E-05 323.1636344107301 121.14 0.62707 116.46 116 116.63 -4.6873 24 17 2 0 0 0 0.81221 1 23197 23197 1.1933 0.735 1 2585000 + 50882 22420 33780 33801 49825 49825 -0.014510889556618167 VKMVASVCM 9 Unmodified _VKMVASVCM_ 0 0 0 REV__ENST00000498825.1_1_10:12214695-12214857:-|nuORF REV__ENST00000498825.1_1_10:12214695-12214857:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 323.1463623046875 3 323.163965 966.470065 -0.33279 -0.00010755 0.22577 7.2962E-05 -0.10702 -3.4584E-05 323.1639458491633 120.84 0.71689 116.38 116.06 116.78 -4.467 27 19 2 0 0 0 0.81221 1 23243 23243 1.1933 0.735 1 1531000 + 50883 22420 33780 33801 49826 49826 -0.014510889556618167 VKMVASVCM 9 Unmodified _VKMVASVCM_ 0 0 0 REV__ENST00000498825.1_1_10:12214695-12214857:-|nuORF REV__ENST00000498825.1_1_10:12214695-12214857:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 323.163965 966.470065 0.60869 0.00019671 -0.8987 -0.00029043 -0.29002 -9.3723E-05 323.1636344107301 121.14 0.62707 116.46 116 116.63 -4.6873 0.039287 -0.00049256 NaN 1.1933 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2585000 + 50884 22420 33780 33801 -0.014510889556618167 VKPKKLRRRR 10 Unmodified _VKPKKLRRRR_ 0 0 0 REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 668.6762084960938 2 668.959846 1335.90514 NaN NaN NaN NaN NaN NaN NaN 168.33 1 163.38 162.88 163.88 -4.948 0 0 0 2.8426 1 33180 33180 0.0013812 0 1 + 50885 20914 33781 33802 49827 49827 0.2506232361838556 VKPVILLIPQ 10 Unmodified _VKPVILLIPQ_ 0 0 0 POLQ|p.Y2285Ifs*7|1|0.44|ENSG00000051341|chr3:121467633-121467633|A/-|frameshift_variant;POLQ|p.H2496Tfs*59|1|0.11|ENSG00000051341|chr3:121436179-121436179|G/-|frameshift_variant;ENSG00000051341|ENST00000264233|POLQ;POLQ|p.K1535Nfs*4|1|0.38|ENSG00000051341|chr3:121488326-121488326|T/-|frameshift_variant;nc|ENSG00000051341|O75417-2|POLQ POLQ|p.Y2285Ifs*7|1|0.44|ENSG00000051341|chr3:121467633-121467633|A/-|frameshift_variant POLQ|p.Y2285Ifs*7|1|0.44|ENSG00000051341|chr3:121467633-121467633|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 560.3525390625 2 560.378635 1118.74272 NaN NaN NaN NaN NaN NaN NaN 166.69 1 161.73 161.23 162.23 -4.9573 0 0 0 0.22588 1 32706 32706 5.7319 0.97584 1 50886 1248 33782 33803 49828 49828 0.18809502373051146 VKPVIRKI 8 Unmodified _VKPVIRKI_ 0 0 0 ENST00000492084.5_1_6:31670780-31670846:-|nuORF ENST00000492084.5_1_6:31670780-31670846:-|nuORF ENST00000492084.5_1_6:31670780-31670846:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.19085693359375 3 318.22705 951.659321 NaN NaN NaN NaN NaN NaN NaN 65.178 1 61.72 61.22 62.22 -3.4581 0 0 0 0.21486 1 12193 12193 0 0 1 50887 10535 33783 33804 49829 49829 0.18155810715859388 VKPVIRKI 8 Unmodified _VKPVIRKI_ 0 0 0 ENST00000492084.5_1_6:31670780-31670846:-|nuORF ENST00000492084.5_1_6:31670780-31670846:-|nuORF ENST00000492084.5_1_6:31670780-31670846:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.1783142089844 3 318.22705 951.659321 NaN NaN NaN NaN NaN NaN NaN 18.091 1 16.576 16.076 17.076 -1.5148 0 0 0 0.21486 1 2662 2662 0 0 1 50888 10535 33783 33804 49830 49830 0.18155810715859388 VKPVIRKI 8 Unmodified _VKPVIRKI_ 0 0 0 ENST00000492084.5_1_6:31670780-31670846:-|nuORF ENST00000492084.5_1_6:31670780-31670846:-|nuORF ENST00000492084.5_1_6:31670780-31670846:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.2270812988281 3 318.22705 951.659321 NaN NaN NaN NaN NaN NaN NaN 177.34 1 172.44 171.94 172.94 -4.9059 0 0 0 0.21486 1 35367 35367 0 0 1 50889 10535 33783 33804 49831 49831 0.18155810715859388 VKQMTDMLL 9 Unmodified _VKQMTDMLL_ 0 0 0 NUP93|p.V233M|1|0.11|ENSG00000102900|chr16:56823749-56823749|G/A|missense_variant NUP93|p.V233M|1|0.11|ENSG00000102900|chr16:56823749-56823749|G/A|missense_variant NUP93|p.V233M|1|0.11|ENSG00000102900|chr16:56823749-56823749|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.212890625 3 360.192689 1077.55624 -0.31336 -0.00011287 0.78341 0.00028218 0.47006 0.00016931 360.19279438772514 17.202 0.17719 17.202 17.064 17.242 0 7 4 2 0 0 0 0.45972 1 2720 2720 10.899 6.0019 1 208030 50890 12719 33784 33805 49832 49832 0.020561941507139636 VKQWVWLMY 9 Unmodified _VKQWVWLMY_ 0 0 0 ENST00000513603.1_1_5:102442389-102455787:-|nuORF ENST00000513603.1_1_5:102442389-102455787:-|nuORF ENST00000513603.1_1_5:102442389-102455787:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.96954345703125 4 313.919135 1251.64744 -0.58936 -0.00018501 0.24847 7.7999E-05 -0.34089 -0.00010701 313.9192782749324 15.002 0.21154 15.002 14.914 15.125 0 6 5 2 0 0 0 0.88413 1 2256 2256 1.0715 0.3738 1 298700 50891 10764 33785 33806 49833 49833 0.031678259103273376 VKRFLIYLV 9 Unmodified _VKRFLIYLV_ 0 0 0 REV__ENST00000366600.7_1_1:235622034-235634192:-|nuORF REV__ENST00000366600.7_1_1:235622034-235634192:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 384.54046630859375 3 384.249743 1149.7274 NaN NaN NaN NaN NaN NaN NaN 55.143 1 52.259 51.759 52.759 -2.8837 0 0 0 0.19687 1 10545 10545 0.029283 0 1 + 50892 20901 33786 33807 49834 49834 0.1585263557583403 VKRGLFKV 8 Unmodified _VKRGLFKV_ 0 0 0 ENST00000487455.1_1_7:150065323-150066789:+|nuORF;ENST00000519397.1_1_7:150065323-150068442:+|nuORF ENST00000487455.1_1_7:150065323-150066789:+|nuORF ENST00000487455.1_1_7:150065323-150066789:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.2018127441406 3 316.2114 945.612371 NaN NaN NaN NaN NaN NaN NaN 80.304 1 76.794 76.294 77.294 -3.5102 0 0 0 0.21486 1 15684 15684 0.40072 0 1 50893 10468 33787 33808 49835 49835 0.1373895116470294 VKRGRKKLLY 10 Unmodified _VKRGRKKLLY_ 0 0 0 ENSG00000049249|ENST00000377507|TNFRSF9 ENSG00000049249|ENST00000377507|TNFRSF9 ENSG00000049249|ENST00000377507|TNFRSF9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.17620849609375 4 315.962029 1259.81901 -0.61835 -0.00019538 -0.84971 -0.00026848 -1.4681 -0.00046385 316.21268764349463 12.241 0.20612 12.241 12.172 12.378 0 9 5 3 0 0 0 0.76698 1 1707 1707 0.13989 0.04505 1 262560 50894 1238 33788 33809 49836 49836 0.1994931899303083 VKRIKLCRTK 10 Unmodified _VKRIKLCRTK_ 0 0 0 MAP10|p.L687Rfs*15|1|0.08|ENSG00000212916|chr1:232807082-232807083|-/G|frameshift_variant MAP10|p.L687Rfs*15|1|0.08|ENSG00000212916|chr1:232807082-232807083|-/G|frameshift_variant MAP10|p.L687Rfs*15|1|0.08|ENSG00000212916|chr1:232807082-232807083|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7595825195312 2 622.902817 1243.79108 NaN NaN NaN NaN NaN NaN NaN 171.1 1 171.1 170.6 171.6 0 0 0 0 2.8426 1 35228 35228 3.8763 3.6109 1 50895 12108 33789 33810 49837 49837 0.17893672741274713 VKRKRIVL 8 Unmodified _VKRKRIVL_ 0 0 0 REV__ENST00000556340.1_1_9:139265151-139266545:-|nuORF REV__ENST00000556340.1_1_9:139265151-139266545:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 506.27569580078125 2 506.361111 1010.70767 NaN NaN NaN NaN NaN NaN NaN 161 1 155.77 155.27 156.27 -5.2299 0 0 0 0.2396 1 31264 31264 0 0 1 + 50896 19110 33790 33811 49838 49838 0.20274304355723416 VKRRRRLP 8 Unmodified _VKRRRRLP_ 0 0 0 REV__GPATCH2L|p.L335Yfs*16|1|0.04|ENSG00000089916|chr14:76176641-76176642|-/ACTCTTTCTGCCGAGGGTCACTAATGATA|frameshift_variant REV__GPATCH2L|p.L335Yfs*16|1|0.04|ENSG00000089916|chr14:76176641-76176642|-/ACTCTTTCTGCCGAGGGTCACTAATGATA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2655639648438 2 540.864883 1079.71521 NaN NaN NaN NaN NaN NaN NaN 40.063 1 37.523 37.023 38.023 -2.5398 0 0 0 0.2396 1 7170 7170 0.12286 0.049601 1 + 50897 14539 33791 33812 49839 49839 0.17854456676013797 VKRRRRRGV 9 Unmodified _VKRRRRRGV_ 0 0 0 CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.30352783203125 3 394.930401 1181.76937 NaN NaN NaN NaN NaN NaN NaN 5.5951 1 4.9689 4.4689 5.4689 -0.62626 0 0 0 0.23508 1 313 313 0 0 1 50898 500 33792 33813 49840 49840 0.18576048827571867 VKRRTRRRERR 11 Unmodified _VKRRTRRRERR_ 0 0 0 CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3856201171875 2 784.993272 1567.97199 NaN NaN NaN NaN NaN NaN NaN 89.653 1 85.794 85.294 86.294 -3.8595 0 0 0 0.22632 1 17541 17541 0.094841 0.094841 1 50899 500 33793 33814 49841 49841 0.21072327162164584 VKRRTRRRERR 11 Unmodified _VKRRTRRRERR_ 0 0 0 CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant CFAP46|p.E1364Rfs*56|1|0.3|ENSG00000171811|chr10:132878004-132878004|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6829833984375 3 523.664607 1567.97199 0.2994 0.00015679 -2.1829 -0.0011431 -1.8835 -0.00098633 523.6643445684995 138.6 0.28773 133.75 133.54 133.83 -4.8492 10 7 2 0 0 0 0.66298 2 26711 26699;26711 0.094841 0 1 2059900 50900 500 33793 33814 49842;49843 49843 0.21072327162164584 VKRRWLKILTR 11 Unmodified _VKRRWLKILTR_ 0 0 0 REV__ENSG00000170683|ENST00000642047|OR10A3 REV__ENSG00000170683|ENST00000642047|OR10A3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2638854980469 3 490.324417 1467.95142 NaN NaN NaN NaN NaN NaN NaN 175.96 1 175.96 175.46 176.46 0 0 0 0 0.22632 1 36451 36451 0 0 1 + 50901 18175 33794 33815 49844 49844 0.23616343729804612 VKRSKERKK 9 Unmodified _VKRSKERKK_ 0 0 0 ENST00000553968.1_1_14:80678349-80678424:-|nuORF ENST00000553968.1_1_14:80678349-80678424:-|nuORF ENST00000553968.1_1_14:80678349-80678424:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 386.9187927246094 3 386.919168 1157.73567 NaN NaN NaN NaN NaN NaN NaN 10.064 1 10.064 9.5644 10.564 0 0 0 0 0.23508 1 1230 1230 0 0 1 50902 11212 33795 33816 49845 49845 0.16311582545154124 VKRVRLVI 8 Unmodified _VKRVRLVI_ 0 0 0 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 328.0116882324219 3 328.234316 981.681119 NaN NaN NaN NaN NaN NaN NaN 68.094 1 64.986 64.486 65.486 -3.1086 0 0 0 0.21486 1 13219 13219 0 0 1 + 50903 17640 33796 33817 49846 49846 0.1895461546439492 VKSKKSSS 8 Unmodified _VKSKKSSS_ 0 0 0 REV__ENST00000560957.1_1_15:86225432-86228206:+|nuORF REV__ENST00000560957.1_1_15:86225432-86228206:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2350769042969 2 425.753267 849.491981 0.015929 6.7819E-06 -0.85937 -0.00036588 -0.84344 -0.0003591 425.75284649713007 142.66 0.63998 137.76 137.42 138.06 -4.8982 24 17 2 0 0 0 1.0281 1 27583 27583 0.52476 0.52476 1 4467000 + 50904 23046 33797 33818 49847 49847 0.06121498380423418 VKSPEDRL 8 Unmodified _VKSPEDRL_ 0 0 0 REV__ENST00000532504.5_1_11:70185286-70228249:+|nuORF REV__ENST00000532504.5_1_11:70185286-70228249:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1776428222656 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 129.69 1 125.06 124.56 125.56 -4.6292 0 0 0 0.21486 1 25556 25556 1.4819 0 1 + 50905 16083 33798 33819 49848 49848 0.03988883409135724 VKSPTIPCV 9 Unmodified _VKSPTIPCV_ 0 0 0 ENST00000412414.6_1_2:207945103-207945412:-|nuORF ENST00000412414.6_1_2:207945103-207945412:-|nuORF ENST00000412414.6_1_2:207945103-207945412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1915588378906 3 315.180889 942.520839 NaN NaN NaN NaN NaN NaN NaN 89.36 1 89.36 88.86 89.86 0 0 0 0 0.23508 1 17450 17450 2.2828 0 1 50906 9586 33799 33820 49849 49849 0.04727899685201464 VKSRRKRK 8 Unmodified _VKSRRKRK_ 0 0 0 REV__MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant REV__MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 353.24163818359375 3 353.240353 1056.69923 NaN NaN NaN NaN NaN NaN NaN 14.532 1 14.532 14.032 15.032 0 0 0 0 0.21486 1 2169 2169 0.40072 0 1 + 50907 23885 33800 33821 49850 49850 0.17314750439118143 VKSRRKRKKKK 11 Unmodified _VKSRRKRKKKK_ 0 0 0 REV__MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant REV__MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2411193847656 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 148.65 1 143.59 143.09 144.09 -5.0595 0 0 0 0.22632 1 28796 28796 0 0 1 + 50908 23885 33801 33822 49851 49851 0.28126550852630317 VKSWRVKY 8 Unmodified _VKSWRVKY_ 0 0 0 REV__ENSG00000132702|ENST00000255039|HAPLN2 REV__ENSG00000132702|ENST00000255039|HAPLN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27587890625 2 533.313826 1064.6131 NaN NaN NaN NaN NaN NaN NaN 165.14 1 160.19 159.69 160.69 -4.9484 0 0 0 0.23025 1 32249 32249 0.68139 0 1 + 50909 16128 33802 33823 49852 49852 0.08337745813742004 VKTKLLVK 8 Unmodified _VKTKLLVK_ 0 0 0 REV__RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant REV__RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2224426269531 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 14.086 1 14.086 13.586 14.586 0 0 0 0 0.21486 1 2076 2076 0.40072 0 1 + 50910 24577 33803 33824 49853 49853 0.18136988621711225 VKTKLLVK 8 Unmodified _VKTKLLVK_ 0 0 0 REV__RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant REV__RP1|p.R793Efs*55|4|0.41|ENSG00000104237|chr8:54626253-54626253|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2232666015625 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 13.141 1 12.132 11.632 12.632 -1.0098 0 0 0 0.21486 1 1882 1882 0.40072 0 1 + 50911 24577 33803 33824 49854 49854 0.18136988621711225 VKTRFLRGVF 10 Unmodified _VKTRFLRGVF_ 0 0 0 REV__ENSG00000100739|ENST00000216629|BDKRB1 REV__ENSG00000100739|ENST00000216629|BDKRB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 611.8555297851562 2 611.874582 1221.73461 NaN NaN NaN NaN NaN NaN NaN 9.3897 1 9.3897 8.8897 9.8897 0 0 0 0 2.8426 1 1080 1080 0.0013812 0 1 + 50912 14736 33804 33825 49855 49855 0.13261368176245014 VKTRTRRARSY 11 Unmodified _VKTRTRRARSY_ 0 0 0 REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23992919921875 3 465.276014 1392.80621 -0.45217 -0.00021039 2.8171 0.0013107 2.3649 0.0011003 465.6118500940706 37.225 0.098389 34.756 34.708 34.806 -2.4688 4 2 2 0 0 0 0.96216 1 6865 6865 1.3296 0.11481 1 172230 + 50913 15115 33805 33826 49856 49856 0.1255225586285178 VKVELDKKV 9 Unmodified _VKVELDKKV_ 0 0 0 NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant;NEFM|p.K843Nfs*4|1|0.11|ENSG00000104722|chr8:24918383-24918384|-/T|frameshift_variant;NEFM|p.G845Vfs*10|1|0.22|ENSG00000104722|chr8:24918384-24918384|G/-|frameshift_variant;NEFM|p.I861Nfs*4|1|0.3|ENSG00000104722|chr8:24918430-24918431|-/A|frameshift_variant;ENSG00000104722|ENST00000221166|NEFM NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 353.53143310546875 3 353.225375 1056.6543 0.11242 3.9708E-05 -0.41432 -0.00014635 -0.30191 -0.00010664 353.2252856777752 25.839 0.4484 24.205 24.029 24.477 -1.6347 21 12 2 0 0 0 0.45972 1 4281 4281 8.1555 0 1 783720 50914 2248 33806 33827 49857 49857 0.12823462062556246 VKVELDKKV 9 Unmodified _VKVELDKKV_ 0 0 0 NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant;NEFM|p.K843Nfs*4|1|0.11|ENSG00000104722|chr8:24918383-24918384|-/T|frameshift_variant;NEFM|p.G845Vfs*10|1|0.22|ENSG00000104722|chr8:24918384-24918384|G/-|frameshift_variant;NEFM|p.I861Nfs*4|1|0.3|ENSG00000104722|chr8:24918430-24918431|-/A|frameshift_variant;ENSG00000104722|ENST00000221166|NEFM NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 353.225375 1056.6543 0.87333 0.00030848 -0.92703 -0.00032745 -0.053699 -1.8968E-05 353.22500145326546 25.966 0.47832 24.318 24.173 24.651 -1.6482 0.056477 -0.00027603 NaN 8.1555 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 662400 50915 2248 33806 33827 0.12823462062556246 VKVELDKKV 9 Unmodified _VKVELDKKV_ 0 0 0 NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant;NEFM|p.K843Nfs*4|1|0.11|ENSG00000104722|chr8:24918383-24918384|-/T|frameshift_variant;NEFM|p.G845Vfs*10|1|0.22|ENSG00000104722|chr8:24918384-24918384|G/-|frameshift_variant;NEFM|p.I861Nfs*4|1|0.3|ENSG00000104722|chr8:24918430-24918431|-/A|frameshift_variant;ENSG00000104722|ENST00000221166|NEFM NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 353.225375 1056.6543 0.11242 3.9708E-05 -0.41432 -0.00014635 -0.30191 -0.00010664 353.2252856777752 25.839 0.4484 24.205 24.029 24.477 -1.6347 -0.056477 0.00026727 NaN 8.1555 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 783720 50916 2248 33806 33827 0.12823462062556246 VKVFSEFDD 9 Unmodified _VKVFSEFDD_ 0 0 0 ENSG00000173281|ENST00000310455|PPP1R3B ENSG00000173281|ENST00000310455|PPP1R3B ENSG00000173281|ENST00000310455|PPP1R3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7950439453125 2 543.261122 1084.50769 0.3622 0.00019677 -0.4782 -0.00025979 -0.116 -6.3018E-05 543.762311017654 123.5 0.30623 118.9 118.69 118.99 -4.5926 13 8 2 0 0 0 0.48644 1 23758 23758 20.454 7.9221 1 504860 50917 6286 33807 33828 49858 49858 -0.03118259893199138 VKVKLIKS 8 Unmodified _VKVKLIKS_ 0 0 0 REV__ENSG00000102595|ENST00000376747|UGGT2 REV__ENSG00000102595|ENST00000376747|UGGT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.951904296875 3 305.551422 913.632438 -0.61824 -0.0001889 0.72429 0.00022131 0.10605 3.2403E-05 305.55153958279294 13.218 0.44815 13.218 12.894 13.342 0 20 12 3 0 0 0 1.0277 1 1835 1835 0 0 1 467280 + 50918 14843 33808 33829 49859 49859 0.17216702104656179 VKVKLIVLVPP 11 Unmodified _VKVKLIVLVPP_ 0 0 0 ENSG00000158769|ENST00000368026|F11R ENSG00000158769|ENST00000368026|F11R ENSG00000158769|ENST00000368026|F11R MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.92529296875 2 602.923209 1203.83187 NaN NaN NaN NaN NaN NaN NaN 175.84 1 170.94 170.44 171.44 -4.9008 0 0 0 0.22632 1 35052 35052 0 0 1 50919 5179 33809 33830 49860 49860 0.23810337332565723 VKVLLHKA 8 Unmodified _VKVLLHKA_ 0 0 0 nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 303.1955871582031 3 303.207767 906.601472 NaN NaN NaN NaN NaN NaN NaN 109.5 1 105.05 104.55 105.55 -4.4518 0 0 0 0.21486 1 21019 21019 0 0 1 50920 7477 33810 33831 49861 49861 0.14443548790404748 VKVVDERRYRK 11 Unmodified _VKVVDERRYRK_ 0 0 0 nc|ENSG00000122126|Q01968-2|OCRL;ENSG00000122126|ENST00000371113|OCRL nc|ENSG00000122126|Q01968-2|OCRL nc|ENSG00000122126|Q01968-2|OCRL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.90447998046875 4 362.717759 1446.84193 -0.33932 -0.00012308 0.56866 0.00020626 0.22934 8.3186E-05 362.71793714896125 14.622 0.24425 14.622 14.491 14.735 0 10 6 2 0 0 0 0.96225 1 2200 2200 0 0 1 533940 50921 3210 33811 33832 49862 49862 0.13638293319809236 VKVVDERRYRK 11 Unmodified _VKVVDERRYRK_ 0 0 0 nc|ENSG00000122126|Q01968-2|OCRL;ENSG00000122126|ENST00000371113|OCRL nc|ENSG00000122126|Q01968-2|OCRL nc|ENSG00000122126|Q01968-2|OCRL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 362.717759 1446.84193 -0.54874 -0.00019904 0.42262 0.00015329 -0.12612 -4.5744E-05 362.71807694148464 15.759 0.51684 14.537 14.266 14.783 -1.2219 -0.042594 -0.0001171 NaN 0 24 14 3 NaN NaN NaN NaN 0 NaN NaN 0 528460 50922 3210 33811 33832 0.13638293319809236 VKVVKPKRFL 10 Unmodified _VKVVKPKRFL_ 0 0 0 REV__tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1 REV__tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 607.3734741210938 2 607.410801 1212.80705 NaN NaN NaN NaN NaN NaN NaN 139.5 1 139.5 139 140 0 0 0 0 0.22588 1 27731 27731 3.2813 1.6287 1 + 50923 24926 33812 33833 49863 49863 0.2091570224984025 VKYGMKKI 8 Unmodified _VKYGMKKI_ 0 0 0 REV__tr|U7SU96|U7SU96_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01350PE=3SV=1 REV__tr|U7SU96|U7SU96_FUSNUIroncomplextransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01350PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 483.7536315917969 2 483.793881 965.573209 0.057424 2.7782E-05 -0.5281 -0.00025549 -0.47067 -0.00022771 483.79383565279403 115.07 0.21027 110.6 110.43 110.64 -4.4726 9 5 2 0 0 0 0.89276 1 22647 22647 0.12286 0.11459 1 384760 + 50924 25152 33813 33834 49864 49864 0.08904482818809356 VKYNFTDR 8 Unmodified _VKYNFTDR_ 0 0 0 tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.272216796875 2 521.769448 1041.52434 -0.30938 -0.00016142 0.16722 8.7249E-05 -0.14216 -7.4176E-05 521.769636222129 87.9 0.61516 84.107 83.87 84.485 -3.7926 23 16 2 0 0 0 8448 1 17265 17265 6.2058 5.579 1 2674000 50925 25891 33814 33835 49865 49865 0.005242857833991366 VLADALKSI 9 Unmodified _VLADALKSI_ 0 0 0 ENST00000573554.1_1_16:18800267-18800435:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A ENST00000573554.1_1_16:18800267-18800435:-|nuORF ENST00000573554.1_1_16:18800267-18800435:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2452392578125 2 465.286943 928.559333 0.12317 5.731E-05 -0.13098 -6.0944E-05 -0.0078095 -3.6337E-06 465.2868184270968 121.77 0.87196 121.77 121.33 122.2 0 48 24 3 0 0 0 0.039965 4 24016 23923;24016;24041;24081 86.332 26.963 1 7899200 50926 3851 33815 33836 49866;49867;49868;49869 49867 0.09219528591370363 VLADALKSI 9 Unmodified _VLADALKSI_ 0 0 0 ENST00000573554.1_1_16:18800267-18800435:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A ENST00000573554.1_1_16:18800267-18800435:-|nuORF ENST00000573554.1_1_16:18800267-18800435:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2382507324219 2 465.286943 928.559333 0.060316 2.8064E-05 -0.20794 -9.6751E-05 -0.14762 -6.8687E-05 465.2868009760441 125.77 0.779 121.17 120.83 121.61 -4.5984 55 21 3 0 0 0 0.012196 1 24771 24771 100.09 20.494 1 13069000 50927 3851 33815 33836 49870 49870 0.09219528591370363 VLADALKSI 9 Unmodified _VLADALKSI_ 0 0 0 ENST00000573554.1_1_16:18800267-18800435:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A ENST00000573554.1_1_16:18800267-18800435:-|nuORF ENST00000573554.1_1_16:18800267-18800435:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24713134765625 2 465.286943 928.559333 0.24749 0.00011515 -0.3125 -0.0001454 -0.065007 -3.0247E-05 465.28672032154503 126.1 0.68994 121.33 121.01 121.7 -4.7682 52 19 3 0 0 0 0.048054 1 24227 24227 131.93 45.6 1 9373400 50928 3851 33815 33836 49871 49871 0.09219528591370363 VLADALKSI 9 Unmodified _VLADALKSI_ 0 0 0 ENST00000573554.1_1_16:18800267-18800435:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A ENST00000573554.1_1_16:18800267-18800435:-|nuORF ENST00000573554.1_1_16:18800267-18800435:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24969482421875 2 465.286943 928.559333 0.19969 9.2913E-05 -0.27446 -0.0001277 -0.074773 -3.4791E-05 465.28678225370595 126.07 0.82936 121.42 121.05 121.88 -4.6495 58 22 3 0 0 0 0.041967 1 24224 24224 86.332 26.963 1 10250000 50929 3851 33815 33836 49872 49872 0.09219528591370363 VLAEAALSHLR 11 Unmodified _VLAEAALSHLR_ 0 0 0 REV__ENSG00000168813|ENST00000355898|ZNF507 REV__ENSG00000168813|ENST00000355898|ZNF507 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2752075195312 2 590.345855 1178.67716 NaN NaN NaN NaN NaN NaN NaN 158.26 1 152.99 152.49 153.49 -5.2712 0 0 0 0.23018 1 30709 30709 8.1555 1.9497 1 + 50930 18059 33816 33837 49873 49873 0.09496481180030969 VLAELPQQVV 10 Unmodified _VLAELPQQVV_ 0 0 0 ENST00000565951.1_1_16:57181456-57181567:+|nuORF;ENST00000567011.1_1_16:57179810-57181567:+|nuORF;nc|ENSG00000140848|Q96FN4-2|CPNE2;ENSG00000140848|ENST00000290776|CPNE2 ENST00000565951.1_1_16:57181456-57181567:+|nuORF ENST00000565951.1_1_16:57181456-57181567:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7813110351562 2 548.324057 1094.63356 0.19171 0.00010512 0.032984 1.8086E-05 0.22469 0.0001232 548.3240786859108 135.51 0.66037 130.87 130.55 131.21 -4.6399 31 18 2 0 0 0 0.41575 1 26720 26720 29.082 0 1 2376500 50931 4330 33817 33838 49874 49874 0.09002871682901059 VLAFRAGE 8 Unmodified _VLAFRAGE_ 0 0 0 REV__ENSG00000121410|ENST00000263100|A1BG REV__ENSG00000121410|ENST00000263100|A1BG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.89141845703125 2 431.742702 861.470852 -0.087927 -3.7962E-05 0.030589 1.3206E-05 -0.057338 -2.4755E-05 431.7426209898545 42.77 0.7282 40.119 39.744 40.472 -2.651 33 20 2 0 0 0 1.0231 1 7659 7659 4.3292 1.44 1 1664700 + 50932 15657 33818 33839 49875 49875 0.03457533071571106 VLAFRAGE 8 Unmodified _VLAFRAGE_ 0 0 0 REV__ENSG00000121410|ENST00000263100|A1BG REV__ENSG00000121410|ENST00000263100|A1BG MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 431.742702 861.470852 0.2878 0.00012426 -0.54327 -0.00023455 -0.25547 -0.0001103 431.7424592850367 40.026 0.67346 40.026 39.789 40.462 0 -0.074328 -0.00042213 NaN 4.3292 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1364200 + 50933 15657 33818 33839 0.03457533071571106 VLAFRAGE 8 Unmodified _VLAFRAGE_ 0 0 0 REV__ENSG00000121410|ENST00000263100|A1BG REV__ENSG00000121410|ENST00000263100|A1BG MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 431.742702 861.470852 -0.26037 -0.00011241 0.22933 9.9012E-05 -0.031036 -1.34E-05 431.74281456625755 42.804 0.60673 40.085 39.768 40.374 -2.7191 -0.015785 0.00024499 NaN 4.3292 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1613600 + 50934 15657 33818 33839 0.03457533071571106 VLAFRAGE 8 Unmodified _VLAFRAGE_ 0 0 0 REV__ENSG00000121410|ENST00000263100|A1BG REV__ENSG00000121410|ENST00000263100|A1BG MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 431.742702 861.470852 -0.22807 -9.8469E-05 0.085036 3.6714E-05 -0.14304 -6.1756E-05 431.7426675586971 42.778 0.73173 40.172 39.716 40.448 -2.606 0.071418 0.0001204 NaN 4.3292 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1113900 + 50935 15657 33818 33839 0.03457533071571106 VLAGHDNRV 9 Unmodified _VLAGHDNRV_ 0 0 0 nc|ENSG00000172354|P62879-2|GNB2;ENSG00000172354|ENST00000303210|GNB2;GNB1|p.S316G|1|0.3|ENSG00000078369|chr1:1787408-1787408|T/C|missense_variant;ENSG00000114450|ENST00000232564|GNB4;ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1 nc|ENSG00000172354|P62879-2|GNB2;ENSG00000078369|ENST00000378609|GNB1 ENSG00000078369|ENST00000378609|GNB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2552490234375 2 490.76724 979.519927 0.3388 0.00016627 0.18563 9.1103E-05 0.52444 0.00025738 490.76743445986517 20.067 0.24393 18.67 18.585 18.829 -1.3966 10 6 2 0 0 0 0.70212 1 3331 3331 27.629 9.4938 1 616350 50936 6212;1578 33819 33840 49876 49876 0.029348213605203455 VLAGHDNRV 9 Unmodified _VLAGHDNRV_ 0 0 0 nc|ENSG00000172354|P62879-2|GNB2;ENSG00000172354|ENST00000303210|GNB2;GNB1|p.S316G|1|0.3|ENSG00000078369|chr1:1787408-1787408|T/C|missense_variant;ENSG00000114450|ENST00000232564|GNB4;ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1 nc|ENSG00000172354|P62879-2|GNB2;ENSG00000078369|ENST00000378609|GNB1 ENSG00000078369|ENST00000378609|GNB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 490.76724 979.519927 0.14001 6.8713E-05 0.43135 0.00021169 0.57136 0.0002804 490.7673762125193 18.651 0.24244 18.651 18.511 18.754 0 -0.012089 -0.00040964 NaN 27.629 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 357650 50937 6212;1578 33819 33840 0.029348213605203455 VLAHTILGV 9 Unmodified _VLAHTILGV_ 0 0 0 ENST00000510206.5_1_4:186321548-186327081:-|nuORF;ENSG00000109775|ENST00000264689|UFSP2 ENST00000510206.5_1_4:186321548-186327081:-|nuORF ENST00000510206.5_1_4:186321548-186327081:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5227966308594 2 461.789653 921.564752 0.18718 8.6436E-05 0.21374 9.8701E-05 0.40091 0.00018514 461.78949398051736 120.88 0.57788 120.88 120.53 121.11 0 19 15 2 0 0 0 0.091177 1 23818 23818 60.39 24.345 1 888650 50938 2542 33820 33841 49877 49877 0.10083252173876645 VLAHTILGV 9 Unmodified _VLAHTILGV_ 0 0 0 ENST00000510206.5_1_4:186321548-186327081:-|nuORF;ENSG00000109775|ENST00000264689|UFSP2 ENST00000510206.5_1_4:186321548-186327081:-|nuORF ENST00000510206.5_1_4:186321548-186327081:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5320129394531 2 461.789653 921.564752 0.30977 0.00014305 -0.35135 -0.00016225 -0.041586 -1.9204E-05 461.7895154806565 125.11 0.7332 120.34 119.88 120.61 -4.7681 27 20 2 0 0 0 0.6226 1 23996 23996 4.897 4.7741 1 1255400 50939 2542 33820 33841 49878 49878 0.10083252173876645 VLAHTILGV 9 Unmodified _VLAHTILGV_ 0 0 0 ENST00000510206.5_1_4:186321548-186327081:-|nuORF;ENSG00000109775|ENST00000264689|UFSP2 ENST00000510206.5_1_4:186321548-186327081:-|nuORF ENST00000510206.5_1_4:186321548-186327081:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.7592468261719 2 461.789653 921.564752 0.22815 0.00010536 -0.12523 -5.783E-05 0.10291 4.7525E-05 461.78951185608315 125 0.74697 120.35 119.96 120.71 -4.6495 22 20 2 0 0 0 0.25976 1 24065 24065 17.113 8.9574 1 819590 50940 2542 33820 33841 49879 49879 0.10083252173876645 VLAKLCKTIY 10 Unmodified _VLAKLCKTIY_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3328857421875 2 576.346477 1150.6784 NaN NaN NaN NaN NaN NaN NaN 156.9 1 151.63 151.13 152.13 -5.2712 0 0 0 0.22588 1 30436 30436 9.3831 1.473 1 50941 7353 33821 33842 49880 49880 0.10908979224586801 VLANDLWTY 9 Unmodified _VLANDLWTY_ 0 0 0 REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7803344726562 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 29.733 1 27.658 27.158 28.158 -2.0743 0 0 0 0.23508 1 5062 5062 7.2892 0 1 + 50942 14755 33822 33843 49881 49881 0.0013803672338781325 VLAPAPGH 8 Unmodified _VLAPAPGH_ 0 0 0 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2188415527344 2 381.218863 760.423173 -0.19129 -7.2925E-05 0.28507 0.00010867 0.093776 3.5749E-05 381.2189116999908 54.435 0.55711 54.435 54.172 54.729 0 26 15 2 0 0 0 8448 1 10396 10396 0.62683 0 1 1680000 + 50943 14084 33823 33844 49882 49882 0.033378788713775975 VLAPAPGH 8 Unmodified _VLAPAPGH_ 0 0 0 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2191162109375 2 381.218863 760.423173 0.073383 2.7975E-05 0.094552 3.6045E-05 0.16794 6.402E-05 381.2188030009781 57.653 0.60677 54.402 54.009 54.616 -3.2517 28 16 2 0 0 0 8448 1 10648 10648 0.62683 0 1 1051200 + 50944 14084 33823 33844 49883 49883 0.033378788713775975 VLAPAPGH 8 Unmodified _VLAPAPGH_ 0 0 0 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2114562988281 2 381.218863 760.423173 -0.61293 -0.00023366 1.0564 0.00040274 0.44352 0.00016908 381.21910753293406 57.642 0.80509 54.437 53.938 54.743 -3.2052 44 22 3 0 0 0 8448 2 10732 10732;10789 0.62683 0 1 1440400 + 50945 14084 33823 33844 49884;49885 49884 0.033378788713775975 VLAPRRKKR 9 Unmodified _VLAPRRKKR_ 0 0 0 nc|ENSG00000138336|Q8NFU7-3|TET1;ENSG00000138336|ENST00000373644|TET1;nc|ENSG00000138336|Q8NFU7-2|TET1 nc|ENSG00000138336|Q8NFU7-3|TET1 nc|ENSG00000138336|Q8NFU7-3|TET1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2215576171875 3 375.256003 1122.74618 NaN NaN NaN NaN NaN NaN NaN 148.76 1 144.05 143.55 144.55 -4.7095 0 0 0 0.23508 1 29543 29543 2.4985 0 1 50946 4165 33824 33845 49886 49886 0.1897160999026255 VLAPRVLRA 9 Unmodified _VLAPRVLRA_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.2257080078125 3 332.222188 993.644734 -0.33275 -0.00011055 0.33703 0.00011197 0.0042765 1.4207E-06 332.2222758767288 68.231 0.92706 65.122 64.591 65.518 -3.1086 82 26 4 0 0 0 0.15889 1 13202 13202 22.736 0 1 43795000 50947 1239 33825 33846 49887 49887 0.14765738567689368 VLAPRVLRA 9 Unmodified _VLAPRVLRA_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 498.19781494140625 2 497.829643 993.644734 0.23376 0.00011637 0.016909 8.418E-06 0.25067 0.00012479 497.82959593668363 68.628 0.56814 65.091 64.828 65.396 -3.5362 30 15 2 0 0 0 0.38759 1 12955 12955 22.736 10.496 1 10283000 50948 1239 33825 33846 49888 49888 0.14765738567689368 VLAPRVLRA 9 Unmodified _VLAPRVLRA_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 497.829643 993.644734 -0.13001 -6.4724E-05 0.24257 0.00012076 0.11255 5.6032E-05 497.8297690627806 65.387 0.66126 65.387 65.031 65.692 0 0.23401 8.9758E-05 NaN 22.736 45 18 3 NaN NaN NaN NaN 0 NaN NaN 0 17475000 50949 1239 33825 33846 0.14765738567689368 VLAPRVLRA 9 Unmodified _VLAPRVLRA_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 332.222188 993.644734 -0.74919 -0.0002489 0.65472 0.00021751 -0.094471 -3.1385E-05 332.2223602174751 65.409 0.86873 65.409 64.959 65.828 0 0.14362 0.0001687 NaN 22.736 77 24 5 NaN NaN NaN NaN 0 NaN NaN 0 76339000 50950 1239 33825 33846 0.14765738567689368 VLAPRVLRA 9 Unmodified _VLAPRVLRA_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 497.829643 993.644734 -0.027649 -1.3764E-05 0.27383 0.00013632 0.24618 0.00012256 497.82971877554576 68.162 0.6815 65.053 64.73 65.412 -3.1086 -0.10006 0.00012089 NaN 22.736 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 13408000 50951 1239 33825 33846 0.14765738567689368 VLAPRVLRA 9 Unmodified _VLAPRVLRA_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 497.829643 993.644734 0.16075 8.0027E-05 0.1034 5.1474E-05 0.26415 0.0001315 497.82959884416726 68.472 0.67924 65.082 64.705 65.384 -3.3903 -0.07191 -4.8807E-05 NaN 22.736 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 9733500 50952 1239 33825 33846 0.14765738567689368 VLAQQLTHIE 10 Unmodified _VLAQQLTHIE_ 0 0 0 ENSG00000198915|ENST00000395810|RASGEF1A;nc|ENSG00000198915|Q8N9B8-2|RASGEF1A ENSG00000198915|ENST00000395810|RASGEF1A ENSG00000198915|ENST00000395810|RASGEF1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.329345703125 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 124.43 1 119.66 119.16 120.16 -4.7681 0 0 0 0.22588 1 23897 23897 10.074 1.4806 1 50953 7523 33826 33847 49889 49889 0.06533086051786086 VLAQRSLEY 9 Unmodified _VLAQRSLEY_ 0 0 0 ENSG00000118733|ENST00000370103|OLFM3;nc|ENSG00000118733|Q96PB7|OLFM3;nc|ENSG00000118733|Q96PB7-5|OLFM3 ENSG00000118733|ENST00000370103|OLFM3 ENSG00000118733|ENST00000370103|OLFM3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 116.56 1 112.07 111.57 112.57 -4.486 0 0 0 0.23508 1 22981 22981 2.7352 0.89096 1 50954 3048 33827 33848 49890 49890 0.0461712798901317 VLATGSGIVI 10 Unmodified _VLATGSGIVI_ 0 0 0 nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A nc|ENSG00000167695|Q8TBR7-1|TLCD3A nc|ENSG00000167695|Q8TBR7-1|TLCD3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.252685546875 2 465.286943 928.559333 0.12317 5.731E-05 -0.13098 -6.0944E-05 -0.0078095 -3.6337E-06 465.2868184270968 121.77 0.87196 121.77 121.33 122.2 0 48 24 3 0 0 0 0.096811 1 24045 24045 61.357 7.9535 1 7899200 50955 5835 33828 33849 49891 49891 0.09219528591370363 VLATGSGIVI 10 Unmodified _VLATGSGIVI_ 0 0 0 nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A nc|ENSG00000167695|Q8TBR7-1|TLCD3A nc|ENSG00000167695|Q8TBR7-1|TLCD3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2375793457031 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 125.42 1 120.82 120.32 121.32 -4.5984 0 0 0 0.22323 1 24727 24727 24.021 2.2739 1 50956 5835 33828 33849 49892 49892 0.09219528591370363 VLATLAVSGV 10 Unmodified _VLATLAVSGV_ 0 0 0 REV__ENSG00000189376|ENST00000276704|C8orf76 REV__ENSG00000189376|ENST00000276704|C8orf76 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24969482421875 2 465.286943 928.559333 0.12317 5.731E-05 -0.13098 -6.0944E-05 -0.0078095 -3.6337E-06 465.2868184270968 121.77 0.87196 121.77 121.33 122.2 0 48 24 3 0 0 0 0.664 1 23926 23926 14.838 0.43289 1 7899200 + 50957 19207 33829 33850 49893 49893 0.09219528591381732 VLCYRCLS 8 Unmodified _VLCYRCLS_ 0 0 0 nc|ENSG00000155966|P51816-7|AFF2;AFF2|p.Q1237Pfs*15|1|0.14|ENSG00000155966|chrX:148987448-148987449|-/C|frameshift_variant;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2 nc|ENSG00000155966|P51816-7|AFF2 nc|ENSG00000155966|P51816-7|AFF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7370910644531 2 478.738248 955.461943 NaN NaN NaN NaN NaN NaN NaN 131.82 1 131.82 131.32 132.32 0 0 0 0 0.22934 1 26053 26053 0.25148 0 1 50958 90 33830 33851 49894 49894 -0.017568998807632852 VLCYTASEA 9 Unmodified _VLCYTASEA_ 0 0 0 REV__ENSG00000119927|ENST00000348367|GPAM REV__ENSG00000119927|ENST00000348367|GPAM MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7225036621094 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 84.514 1 84.514 84.014 85.014 0 0 0 0 0.22251 1 16487 16487 16.942 6.1184 1 + 50959 15602 33831 33852 49895 49895 -0.047415603451327115 VLDALTSYAL 10 Unmodified _VLDALTSYAL_ 0 0 0 REV__TRRAP-ASNS|1|fusion;REV__TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant REV__TRRAP-ASNS|1|fusion MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.282958984375 2 533.294965 1064.57538 0.59394 0.00031674 -0.23781 -0.00012682 0.35613 0.00018992 533.2948298085394 99.064 0.55787 94.795 94.441 94.999 -4.2692 25 15 2 0 0 0 0.664 1 18974 18974 14.838 0 1 2549600 + 50960 25489;19240 33832 33853 49896 49896 0.04567190037596447 VLDDSTAKL 9 Unmodified _VLDDSTAKL_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C;CCDC88C|p.K1383Sfs*29|1|0.08|ENSG00000015133|chr14:91291049-91291049|T/-|frameshift_variant ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7655029296875 2 481.263665 960.512776 0.083685 4.0274E-05 0.26863 0.00012928 0.35232 0.00016956 481.2637319755303 61.832 0.63397 58.871 58.58 59.214 -2.9614 26 17 2 0 0 0 0.11828 1 11902 11902 49.554 7.7147 1 2271400 50961 1107 33833 33854 49897 49897 0.030940439694290944 VLDEADRLL 9 Unmodified _VLDEADRLL_ 0 0 0 ENST00000539934.5_1_12:124093257-124102497:+|nuORF;ENST00000542286.5_1_12:124093257-124104017:+|nuORF;DDX55|p.G366Afs*29|1|0.25|ENSG00000111364|chr12:123617801-123617801|G/-|frameshift_variant;DDX55|p.M534*|1|0.2|ENSG00000111364|chr12:123619692-123619692|A/-|frameshift_variant;ENSG00000111364|ENST00000238146|DDX55 ENST00000539934.5_1_12:124093257-124102497:+|nuORF ENST00000539934.5_1_12:124093257-124102497:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2796020507812 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 99.22 1 99.22 98.72 99.72 0 0 0 0 0.22823 1 19458 19458 15.248 0 1 50962 804 33834 33855 49898 49898 0.04629421752088092 VLDEGKMKLDY 11 Unmodified _VLDEGKMKLDY_ 0 0 0 ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.216796875 3 437.560206 1309.65879 0.20676 9.047E-05 -0.81923 -0.00035846 -0.61247 -0.00026799 437.8941891959028 93.019 0.17758 88.876 88.731 88.909 -4.1435 5 4 2 0 0 0 0.94506 1 17724 17724 9.2438 1.7667 1 484050 50963 6107 33835 33856 49899 49899 0.016345584231657995 VLDEINGY 8 Unmodified _VLDEINGY_ 0 0 0 REV__ENSG00000018510|ENST00000264167|AGPS REV__ENSG00000018510|ENST00000264167|AGPS MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.5397644042969 2 461.729458 921.444362 NaN NaN NaN NaN NaN NaN NaN 159.99 1 155.19 154.69 155.69 -4.7952 0 0 0 0.21486 1 31812 31812 10.183 0 1 + 50964 13972 33836 33857 49900 49900 -0.01950200610428965 VLDERSALY 9 Unmodified _VLDERSALY_ 0 0 0 SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant;ENSG00000111961|ENST00000367467|SASH1 SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2822875976562 2 533.282389 1064.55022 0.30844 0.00016448 -0.78717 -0.00041979 -0.47874 -0.0002553 533.2820414938337 75.941 0.55608 75.941 75.611 76.167 0 29 15 3 0 0 0 0.18865 1 14768 14768 38.615 8.7742 1 3608900 50965 2660 33837 33858 49901 49901 0.020531352350417365 VLDERSALY 9 Unmodified _VLDERSALY_ 0 0 0 SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant;ENSG00000111961|ENST00000367467|SASH1 SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2824096679688 2 533.282389 1064.55022 0.11223 5.9849E-05 -0.099621 -5.3126E-05 0.012606 6.7227E-06 533.2823440528116 79.64 0.56683 76.129 75.837 76.403 -3.5102 38 15 3 0 0 0 0.18865 2 15556 15556;15597 38.615 13.624 1 6177800 50966 2660 33837 33858 49902;49903 49902 0.020531352350417365 VLDERSALY 9 Unmodified _VLDERSALY_ 0 0 0 SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant;ENSG00000111961|ENST00000367467|SASH1 SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2822875976562 2 533.282389 1064.55022 0.31655 0.00016881 -0.45431 -0.00024227 -0.13776 -7.3462E-05 533.282076962377 79.947 0.56168 76.142 75.864 76.425 -3.8048 37 15 4 0 0 0 0.18865 2 15150 15150;15195 38.615 12.347 1 4684700 50967 2660 33837 33858 49904;49905 49904 0.020531352350417365 VLDERSALY 9 Unmodified _VLDERSALY_ 0 0 0 SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant;ENSG00000111961|ENST00000367467|SASH1 SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2830200195312 2 533.282389 1064.55022 -0.063334 -3.3775E-05 0.29373 0.00015664 0.2304 0.00012287 533.2823870617874 79.754 0.69771 76.078 75.69 76.387 -3.676 37 19 3 0 0 0 0.12612 5 15245 15170;15194;15230;15233;15245 47.594 24.835 1 4881400 50968 2660 33837 33858 49906;49907;49908;49909;49910 49910 0.020531352350417365 VLDGTIEY 8 Unmodified _VLDGTIEY_ 0 0 0 ENSG00000130332|ENST00000252622|LSM7 ENSG00000130332|ENST00000252622|LSM7 ENSG00000130332|ENST00000252622|LSM7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 910.4034423828125 1 909.45639 908.449113 0.15488 0.00014086 0.20288 0.00018451 0.35776 0.00032536 909.4564841915125 102.71 0.81058 98.52 98.13 98.941 -4.1861 55 22 3 0 0 0 0.27274 1 20255 20255 38.151 0 1 14596000 50969 3602 33838 33859 49911 49911 -0.008773164676654233 VLDGTIEY 8 Unmodified _VLDGTIEY_ 0 0 0 ENSG00000130332|ENST00000252622|LSM7 ENSG00000130332|ENST00000252622|LSM7 ENSG00000130332|ENST00000252622|LSM7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 909.45639 908.449113 0.65933 0.00059963 -0.21853 -0.00019874 0.4408 0.00040089 909.4561246563206 98.315 0.66424 98.315 97.984 98.649 0 -0.17264 -0.00015345 NaN 38.151 34 18 2 NaN NaN NaN NaN 0 NaN NaN 0 7655500 50970 3602 33838 33859 -0.008773164676654233 VLDGTIEY 8 Unmodified _VLDGTIEY_ 0 0 0 ENSG00000130332|ENST00000252622|LSM7 ENSG00000130332|ENST00000252622|LSM7 ENSG00000130332|ENST00000252622|LSM7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 909.45639 908.449113 0.50718 0.00046126 0.022211 2.02E-05 0.52939 0.00048146 909.456325481614 102.89 0.76471 98.568 98.151 98.915 -4.3208 0.08076 6.5489E-05 NaN 38.151 50 21 3 NaN NaN NaN NaN 0 NaN NaN 0 14050000 50971 3602 33838 33859 -0.008773164676654233 VLDGTIEY 8 Unmodified _VLDGTIEY_ 0 0 0 ENSG00000130332|ENST00000252622|LSM7 ENSG00000130332|ENST00000252622|LSM7 ENSG00000130332|ENST00000252622|LSM7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 909.45639 908.449113 0.67961 0.00061808 -0.12524 -0.0001139 0.55437 0.00050418 909.4561076882015 102.57 0.88063 98.546 98.15 99.03 -4.0212 0.059049 -6.8615E-05 NaN 38.151 54 24 3 NaN NaN NaN NaN 0 NaN NaN 0 8421900 50972 3602 33838 33859 -0.008773164676654233 VLDHFEKQYSK 11 Unmodified _VLDHFEKQYSK_ 0 0 0 ENST00000485793.5_1_3:93781949-93800453:+|nuORF;ENST00000476588.5_1_3:93781949-93803329:+|nuORF;ENSG00000178694|ENST00000314622|NSUN3 ENST00000485793.5_1_3:93781949-93800453:+|nuORF ENST00000485793.5_1_3:93781949-93800453:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24090576171875 3 465.241865 1392.70376 NaN NaN NaN NaN NaN NaN NaN 63.929 1 60.513 60.013 61.013 -3.4158 0 0 0 0.22632 1 11956 11956 0.172 0.12821 1 50973 6588 33839 33860 49912 49912 0.02312125280695909 VLDKELLV 8 Unmodified _VLDKELLV_ 0 0 0 REV__nc|ENSG00000164506|Q5T5C0-3|STXBP5 REV__nc|ENSG00000164506|Q5T5C0-3|STXBP5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.169921875 3 310.195304 927.564084 NaN NaN NaN NaN NaN NaN NaN 57.483 1 57.483 56.983 57.983 0 0 0 0 0.21486 1 10990 10990 1.6526 0 1 + 50974 17688 33840 33861 49913 49913 0.0974041273415196 VLDLPCEYL 9 Unmodified _VLDLPCEYL_ 0 0 0 ENST00000575787.1_1_17:6802758-6803315:+|nuORF ENST00000575787.1_1_17:6802758-6803315:+|nuORF ENST00000575787.1_1_17:6802758-6803315:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2618408203125 2 532.770268 1063.52598 0.090831 4.8392E-05 -1.2009 -0.0006398 -1.1101 -0.00059141 532.76989652839 101.07 1.6981 96.91 95.975 97.673 -4.1594 122 48 4 0 0 0 0.66537 1 19707 19707 8.5933 0 1 20176000 50975 11458 33841 33862 49914 49914 -0.0032384124283453275 VLDLRGKK 8 Unmodified _VLDLRGKK_ 0 0 0 ENST00000529986.5_1_11:57529333-57561533:+|nuORF;ENST00000428599.6_1_11:57529333-57558863:+|nuORF;ENST00000528621.5_1_11:57529333-57558996:+|nuORF;ENST00000532245.5_1_11:57529333-57563148:+|nuORF;ENST00000358694.10_1_11:57529333-57558858:+|nuORF;ENST00000361796.9_1_11:57529333-57556559:+|nuORF;ENST00000532649.5_1_11:57529333-57559018:+|nuORF ENST00000529986.5_1_11:57529333-57561533:+|nuORF ENST00000529986.5_1_11:57529333-57561533:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650085449219 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 49.341 1 49.341 48.841 49.841 0 0 0 0 0.23584 1 9327 9327 0.0082765 0 1 50976 10952 33842 33863 49915 49915 0.1198605692242154 VLDLRGKK 8 Unmodified _VLDLRGKK_ 0 0 0 ENST00000529986.5_1_11:57529333-57561533:+|nuORF;ENST00000428599.6_1_11:57529333-57558863:+|nuORF;ENST00000528621.5_1_11:57529333-57558996:+|nuORF;ENST00000532245.5_1_11:57529333-57563148:+|nuORF;ENST00000358694.10_1_11:57529333-57558858:+|nuORF;ENST00000361796.9_1_11:57529333-57556559:+|nuORF;ENST00000532649.5_1_11:57529333-57559018:+|nuORF ENST00000529986.5_1_11:57529333-57561533:+|nuORF ENST00000529986.5_1_11:57529333-57561533:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 49.475 1 49.475 48.975 49.975 0 0 0 0 0.22757 1 9356 9356 0.25148 0 1 50977 10952 33842 33863 49916 49916 0.1198605692242154 VLDNKPFE 8 Unmodified _VLDNKPFE_ 0 0 0 REV__tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1 REV__tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2439270019531 2 481.2531 960.491647 0.054447 2.6203E-05 0.44289 0.00021314 0.49734 0.00023935 481.2532559292357 65.088 1.1882 62.041 61.522 62.71 -3.047 72 34 3 0 0 0 0.64512 1 12692 12692 19.257 1.1106 1 3888300 + 50978 25268 33843 33864 49917 49917 0.00982078660570096 VLDPEGVLS 9 Unmodified _VLDPEGVLS_ 0 0 0 REV__ENST00000307522.3_1_19:46916396-46916498:-|nuORF REV__ENST00000307522.3_1_19:46916396-46916498:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16998291015625 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 120.71 1 120.71 120.21 121.21 0 0 0 0 0.23508 1 23791 23791 2.4985 0 1 + 50979 20447 33844 33865 49918 49918 0.024666589407161155 VLDQLTKDKSL 11 Unmodified _VLDQLTKDKSL_ 0 0 0 REV__ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant REV__ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7763061523438 2 630.36391 1258.71327 0.66801 0.00042109 -0.49247 -0.00031043 0.17554 0.00011065 630.3634021601098 105.51 0.74043 105.51 105.17 105.91 0 40 20 3 0 0 0 0.47678 1 20722 20722 35.612 4.3439 1 7674400 + 50980 12933 33845 33866 49919 49919 0.09425893566253762 VLDQLTKDKSL 11 Unmodified _VLDQLTKDKSL_ 0 0 0 REV__ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant REV__ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7614135742188 2 630.36391 1258.71327 0.52178 0.00032891 -0.24976 -0.00015744 0.27201 0.00017147 630.3637154738515 109.63 0.63005 105.25 104.89 105.52 -4.3776 45 17 3 0 0 0 0.30222 1 21578 21578 49.527 49.527 1 7541000 + 50981 12933 33845 33866 49920 49920 0.09425893566253762 VLDQLTKDKSL 11 Unmodified _VLDQLTKDKSL_ 0 0 0 REV__ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant REV__ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7775268554688 2 630.36391 1258.71327 0.032451 2.0456E-05 0.093396 5.8873E-05 0.12585 7.9329E-05 630.3639208950233 109.78 0.7083 105.33 105.02 105.73 -4.4518 50 19 4 0 0 0 0.43136 1 21092 21092 42.312 1.8639 1 7415300 + 50982 12933 33845 33866 49921 49921 0.09425893566253762 VLDQLTKDKSL 11 Unmodified _VLDQLTKDKSL_ 0 0 0 REV__ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant REV__ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 630.36391 1258.71327 0.032451 2.0456E-05 0.093396 5.8873E-05 0.12585 7.9329E-05 630.3639208950233 109.78 0.7083 105.33 105.02 105.73 -4.4518 -0.029825 0.00056691 NaN 49.527 50 19 4 NaN NaN NaN NaN 0 NaN NaN 0 7415300 + 50983 12933 33845 33866 0.09425893566253762 VLDRKLLA 8 Unmodified _VLDRKLLA_ 0 0 0 REV__ENST00000438568.6_1_1:150479567-150479729:+|nuORF REV__ENST00000438568.6_1_1:150479567-150479729:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16522216796875 3 309.871044 926.591301 -0.61898 -0.0001918 1.5452 0.00047882 0.92626 0.00028702 309.8714094702928 12.845 0.1407 12.845 12.753 12.894 0 5 3 2 0 0 0 0.89998 1 1802 1802 0.12286 0 1 162200 + 50984 21686 33846 33867 49922 49922 0.12506941065191768 VLDSFLQGY 9 Unmodified _VLDSFLQGY_ 0 0 0 ENSG00000186185|ENST00000593135|KIF18B;KIF18B|p.G393Efs*91|1|0.13|ENSG00000186185|chr17:44932733-44932733|C/-|frameshift_variant;KIF18B|p.C684Afs*66|1|0.21|ENSG00000186185|chr17:44928253-44928253|G/-|frameshift_variant;nc|ENSG00000186185|Q86Y91-6|KIF18B;KIF18B|p.S92N|1|0.35|ENSG00000186185|chr17:44936070-44936070|C/T|missense_variant ENSG00000186185|ENST00000593135|KIF18B ENSG00000186185|ENST00000593135|KIF18B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2567749023438 2 521.266207 1040.51786 0.21491 0.00011202 -0.12087 -6.3006E-05 0.094037 4.9018E-05 521.2661444137824 157.09 0.86275 157.09 156.72 157.59 0 64 24 4 0 0 0 0.029966 3 31490 31490;31512;31560 81.613 29.345 1 21354000 50985 7041 33847 33868 49923;49924;49925 49923 -0.0007765216794268781 VLDSFLQGY 9 Unmodified _VLDSFLQGY_ 0 0 0 ENSG00000186185|ENST00000593135|KIF18B;KIF18B|p.G393Efs*91|1|0.13|ENSG00000186185|chr17:44932733-44932733|C/-|frameshift_variant;KIF18B|p.C684Afs*66|1|0.21|ENSG00000186185|chr17:44928253-44928253|G/-|frameshift_variant;nc|ENSG00000186185|Q86Y91-6|KIF18B;KIF18B|p.S92N|1|0.35|ENSG00000186185|chr17:44936070-44936070|C/T|missense_variant ENSG00000186185|ENST00000593135|KIF18B ENSG00000186185|ENST00000593135|KIF18B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2586059570312 2 521.266207 1040.51786 0.51646 0.00026921 -0.36944 -0.00019258 0.14702 7.6637E-05 521.7675583129898 162.91 0.55164 157.72 157.4 157.95 -5.1878 30 15 3 0 0 0 0.10648 1 31637 31637 53.576 23.351 1 15112000 50986 7041 33847 33868 49926 49926 -0.0007765216794268781 VLDSPPPILD 10 Unmodified _VLDSPPPILD_ 0 0 0 REV__nc|ENSG00000187715|Q3ZCT8-2|KBTBD12 REV__nc|ENSG00000187715|Q3ZCT8-2|KBTBD12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.28466796875 2 533.294965 1064.57538 -0.11427 -6.0938E-05 0.38387 0.00020471 0.2696 0.00014377 533.2951937500773 94.765 0.48595 94.765 94.522 95.008 0 22 13 2 0 0 0 0.12982 1 18555 18555 52.268 12.311 1 1668200 + 50987 19105 33848 33869 49927 49927 0.04567190037619184 VLDSPPPILD 10 Unmodified _VLDSPPPILD_ 0 0 0 REV__nc|ENSG00000187715|Q3ZCT8-2|KBTBD12 REV__nc|ENSG00000187715|Q3ZCT8-2|KBTBD12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2845458984375 2 533.294965 1064.57538 0.10931 5.8292E-05 0.058906 3.1414E-05 0.16821 8.9707E-05 533.2948189538902 98.807 0.65937 94.674 94.265 94.925 -4.1326 35 18 3 0 0 0 0.17721 1 19416 19416 46.021 6.0636 1 2339400 + 50988 19105 33848 33869 49928 49928 0.04567190037619184 VLDSPPPILD 10 Unmodified _VLDSPPPILD_ 0 0 0 REV__nc|ENSG00000187715|Q3ZCT8-2|KBTBD12 REV__nc|ENSG00000187715|Q3ZCT8-2|KBTBD12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2755126953125 2 533.294965 1064.57538 0.10931 5.8292E-05 0.058906 3.1414E-05 0.16821 8.9707E-05 533.2948189538902 98.807 0.65937 94.674 94.265 94.925 -4.1326 35 18 3 0 0 0 0.22629 1 19412 19412 61.357 13.012 1 2339400 + 50989 19105 33848 33869 49929 49929 0.04567190037619184 VLDSPPPILD 10 Unmodified _VLDSPPPILD_ 0 0 0 REV__nc|ENSG00000187715|Q3ZCT8-2|KBTBD12 REV__nc|ENSG00000187715|Q3ZCT8-2|KBTBD12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2825927734375 2 533.294965 1064.57538 0.59394 0.00031674 -0.23781 -0.00012682 0.35613 0.00018992 533.2948298085394 99.064 0.55787 94.795 94.441 94.999 -4.2692 25 15 2 0 0 0 0.20847 1 18931 18931 43.858 3.901 1 2549600 + 50990 19105 33848 33869 49930 49930 0.04567190037619184 VLDSPPPILD 10 Unmodified _VLDSPPPILD_ 0 0 0 REV__nc|ENSG00000187715|Q3ZCT8-2|KBTBD12 REV__nc|ENSG00000187715|Q3ZCT8-2|KBTBD12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.267822265625 2 533.294965 1064.57538 0.19309 0.00010298 -0.30189 -0.000161 -0.1088 -5.8021E-05 533.2947881652324 98.726 0.5742 94.769 94.396 94.97 -3.9564 26 16 2 0 0 0 0.29353 2 18957 18916;18957 37.974 5.6685 1 1817500 + 50991 19105 33848 33869 49931;49932 49932 0.04567190037619184 VLDVSEATS 9 Unmodified _VLDVSEATS_ 0 0 0 REV__ENST00000286355.9_1_8:132053433-132053544:-|nuORF REV__ENST00000286355.9_1_8:132053433-132053544:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2379150390625 2 460.732197 919.449842 -0.09674 -4.4571E-05 0.12582 5.7969E-05 0.029081 1.3398E-05 460.7321031855131 61.384 0.44847 61.384 61.081 61.53 0 18 12 2 0 0 0 0.51974 1 11741 11741 0.40827 0 1 622820 + 50992 20332 33849 33870 49933 49933 -0.013105218185955891 VLEAEVLA 8 Unmodified _VLEAEVLA_ 0 0 0 nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2 nc|ENSG00000186575|P35240-4|NF2 nc|ENSG00000186575|P35240-4|NF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.4075927734375 1 843.482211 842.474934 0.5653 0.00047682 -0.11687 -9.8575E-05 0.44844 0.00037825 843.4821127263889 155.14 0.81967 149.88 149.58 150.4 -5.2526 40 22 2 0 0 0 0.088049 1 30120 30120 78.445 0 1 6208200 50993 7067 33850 33871 49934 49934 0.04739577774626014 VLEDPVHAV 9 Unmodified _VLEDPVHAV_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2575378417969 2 489.766374 977.518196 0.38352 0.00018783 -0.4476 -0.00021922 -0.064087 -3.1388E-05 489.7661564351194 83.014 0.55091 83.014 82.702 83.253 0 26 15 2 0 0 0 0.32428 2 16147 16147;16163 30.225 7.0764 1 1749400 50994 1291 33851 33872 49935;49936 49935 0.028537675519032746 VLEDPVHAV 9 Unmodified _VLEDPVHAV_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.256591796875 2 489.766374 977.518196 0.057533 2.8178E-05 -0.43633 -0.0002137 -0.3788 -0.00018552 489.7662374216546 86.582 0.63573 82.855 82.585 83.22 -3.727 30 17 2 0 0 0 0.11447 2 16915 16915;16945 50.855 14.811 1 3274100 50995 1291 33851 33872 49937;49938 49937 0.028537675519032746 VLEDPVHAV 9 Unmodified _VLEDPVHAV_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2672119140625 2 489.766374 977.518196 0.39435 0.00019314 -0.55749 -0.00027304 -0.16315 -7.9904E-05 489.76613222033114 86.842 0.62477 82.892 82.614 83.239 -3.9503 33 17 2 0 0 0 0.12183 1 16545 16545 48.346 6.2513 1 2481700 50996 1291 33851 33872 49939 49939 0.028537675519032746 VLEDPVHAV 9 Unmodified _VLEDPVHAV_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2676696777344 2 489.766374 977.518196 -0.14496 -7.0994E-05 -0.056561 -2.7702E-05 -0.20152 -9.8696E-05 489.7664101934947 86.552 0.63924 82.823 82.588 83.227 -3.7289 37 17 3 0 0 0 0.085258 2 16568 16568;16613 60.39 9.5345 1 1858600 50997 1291 33851 33872 49940;49941 49940 0.028537675519032746 VLEGSWVLY 9 Unmodified _VLEGSWVLY_ 0 0 0 ENSG00000118231|ENST00000264376|CRYGD ENSG00000118231|ENST00000264376|CRYGD ENSG00000118231|ENST00000264376|CRYGD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.282958984375 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 98.666 1 94.534 94.034 95.034 -4.1326 0 0 0 0.1924 1 19374 19374 24.674 0.65332 1 50998 3022 33852 33873 49942 49942 0.024552247287829232 VLEHFITP 8 Unmodified _VLEHFITP_ 0 0 0 L1MB7_dup19903|chr17:40875288-40875575:+|4.471230206686413|0.3704688365676228|3.59|475.0|18|2|anti-sense;ENSG00000122863|ENST00000373115|CHST3 L1MB7_dup19903|chr17:40875288-40875575:+|4.471230206686413|0.3704688365676228|3.59|475.0|18|2|anti-sense L1MB7_dup19903|chr17:40875288-40875575:+|4.471230206686413|0.3704688365676228|3.59|475.0|18|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72430419921875 2 478.26601 954.517468 NaN NaN NaN NaN NaN NaN NaN 141.9 1 137.04 136.54 137.54 -4.8678 0 0 0 0.17894 1 27379 27379 32.117 3.9437 1 50999 3244 33853 33874 49943 49943 0.038389729028381225 VLEHGRPEDK 10 Unmodified _VLEHGRPEDK_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000055917|Q8TB72-2|PUM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2726440429688 2 590.309469 1178.60439 NaN NaN NaN NaN NaN NaN NaN 112.8 1 108.35 107.85 108.85 -4.4539 0 0 0 0.22588 1 22228 22228 11.495 2.7493 1 51000 1275;3867 33854 33875 49944 49944 0.022227273866064934 VLEHYLRF 8 Unmodified _VLEHYLRF_ 0 0 0 REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 3 359.534431 1075.58147 -0.57706 -0.00020747 -0.58775 -0.00021132 -1.1648 -0.00041879 359.53436367715295 67.661 0.91178 67.661 67.124 68.035 0 48 25 3 0 0 0 0.69031 1 12992 12992 15.847 0 1 2768600 + 51001 18690 33855 33876 49945 49945 0.046697530598066805 VLEHYLRF 8 Unmodified _VLEHYLRF_ 0 0 0 REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2023010253906 3 359.534431 1075.58147 -0.37618 -0.00013525 -0.58012 -0.00020857 -0.9563 -0.00034382 359.5343027019554 70.581 0.66999 67.332 66.931 67.601 -3.2492 46 18 3 0 0 0 0.72428 1 13706 13706 10.824 0 1 3609700 + 51002 18690 33855 33876 49946 49946 0.046697530598066805 VLEISKRLE 9 Unmodified _VLEISKRLE_ 0 0 0 tr|U7SJF6|U7SJF6_FUSNUV-typeH+-transportingATPasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02123PE=3SV=1 tr|U7SJF6|U7SJF6_FUSNUV-typeH+-transportingATPasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02123PE=3SV=1 tr|U7SJF6|U7SJF6_FUSNUV-typeH+-transportingATPasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02123PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7906494140625 2 543.829506 1085.64446 0.32005 0.00017405 0.21503 0.00011694 0.53508 0.00029099 543.828894463621 113.16 0.57957 113.16 112.73 113.31 0 23 16 2 0 0 0 0.35556 1 22278 22278 12.241 0 1 1895400 51003 25940 33856 33877 49947 49947 0.1050627405720661 VLEKKTEEF 9 Unmodified _VLEKKTEEF_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2166442871094 3 374.87289 1121.59684 -0.33596 -0.00012594 0.42937 0.00016096 0.093414 3.5018E-05 374.8729552673279 70.764 0.52973 67.297 67.096 67.626 -3.467 23 14 2 0 0 0 0.72996 1 13449 13449 4.897 0.36815 1 1496700 51004 1572 33857 33878 49948 49948 0.040905750663114304 VLEKTNNL 8 Unmodified _VLEKTNNL_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2592468261719 2 465.766374 929.518196 0.3962 0.00018454 -0.4938 -0.00023 -0.097599 -4.5458E-05 465.7658912092956 28.929 0.31472 26.933 26.728 27.043 -1.9962 11 8 2 0 0 0 0.81042 1 4880 4880 23.148 0 1 365310 51005 4896 33858 33879 49949 49949 0.05061767551910634 VLERLVDI 8 Unmodified _VLERLVDI_ 0 0 0 ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1 ENST00000497453.1_1_1:154524878-154531400:-|nuORF ENST00000497453.1_1_1:154524878-154531400:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.723388671875 2 478.792392 955.570232 0.2259 0.00010816 0.021756 1.0417E-05 0.24765 0.00011857 478.79229357579334 75.81 0.48203 72.176 71.927 72.409 -3.6337 21 13 2 0 0 0 0.30817 1 14439 14439 42.095 0 1 2481000 51006 5265 33859 33880 49950 49950 0.0906693096563913 VLERLVDI 8 Unmodified _VLERLVDI_ 0 0 0 ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1 ENST00000497453.1_1_1:154524878-154531400:-|nuORF ENST00000497453.1_1_1:154524878-154531400:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 478.792392 955.570232 -0.12932 -6.1916E-05 0.27958 0.00013386 0.15026 7.1944E-05 478.79241220281386 72.274 0.44759 72.274 72.023 72.471 0 0.11003 -3.6223E-05 NaN 42.095 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2902700 51007 5265 33859 33880 0.0906693096563913 VLERLVDI 8 Unmodified _VLERLVDI_ 0 0 0 ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1 ENST00000497453.1_1_1:154524878-154531400:-|nuORF ENST00000497453.1_1_1:154524878-154531400:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.792392 955.570232 0.11128 5.328E-05 0.47894 0.00022931 0.59022 0.00028259 478.7923889369027 75.888 0.41479 72.165 71.931 72.346 -3.7227 0.0011328 0.00015468 NaN 42.095 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2313800 51008 5265 33859 33880 0.0906693096563913 VLETDLYR 8 Unmodified _VLETDLYR_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.1943054199219 3 336.850197 1007.52876 0.19336 6.5132E-05 -0.22222 -7.4853E-05 -0.02886 -9.7214E-06 336.850101071895 34.418 0.83606 32.165 31.907 32.743 -2.2527 73 23 5 0 0 0 0.81659 1 6042 6042 3.5965 0 1 47552000 51009 7692 33860 33881 49951 49951 0.025297502063153843 VLETDLYR 8 Unmodified _VLETDLYR_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 336.850197 1007.52876 -0.38416 -0.0001294 0.30889 0.00010405 -0.075264 -2.5353E-05 336.8502677706045 32.312 0.87218 32.312 32.013 32.885 0 0.070491 0.00017272 NaN 3.5965 77 24 5 NaN NaN NaN NaN 0 NaN NaN 0 46243000 51010 7692 33860 33881 0.025297502063153843 VLETDLYR 8 Unmodified _VLETDLYR_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 336.850197 1007.52876 -0.4479 -0.00015087 0.45649 0.00015377 0.0085888 2.8931E-06 336.85030854642935 34.56 0.65496 32.243 31.949 32.604 -2.3175 0.00098726 0.00032187 NaN 3.5965 56 18 4 NaN NaN NaN NaN 0 NaN NaN 0 46440000 51011 7692 33860 33881 0.025297502063153843 VLEVLITK 8 Unmodified _VLEVLITK_ 0 0 0 ENST00000298767.9_1_10:88259585-88259723:-|nuORF ENST00000298767.9_1_10:88259585-88259723:-|nuORF ENST00000298767.9_1_10:88259585-88259723:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2289733886719 2 457.799686 913.584819 -0.050439 -2.3091E-05 0.38831 0.00017777 0.33787 0.00015468 457.799761314016 128.58 0.39302 123.95 123.69 124.08 -4.6292 14 10 2 0 0 0 0.8748 1 25313 25313 14.838 4.7643 1 865990 51012 8529 33861 33882 49952 49952 0.12457003113797782 VLEYVRQRVV 10 Unmodified _VLEYVRQRVV_ 0 0 0 REV__sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1 REV__sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.771484375 2 630.874779 1259.73501 NaN NaN NaN NaN NaN NaN NaN 98.389 1 94.12 93.62 94.62 -4.2692 0 0 0 2.8426 1 18807 18807 0.043787 0 1 + 51013 24715 33862 33883 49953 49953 0.11552743105448826 VLFAMVIRET 10 Unmodified _VLFAMVIRET_ 0 0 0 CCNE1|p.P333L|1|0.25|ENSG00000105173|chr19:29822491-29822491|C/T|missense_variant CCNE1|p.P333L|1|0.25|ENSG00000105173|chr19:29822491-29822491|C/T|missense_variant CCNE1|p.P333L|1|0.25|ENSG00000105173|chr19:29822491-29822491|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2503662109375 2 589.833734 1177.65292 NaN NaN NaN NaN NaN NaN NaN 45.419 1 42.578 42.078 43.078 -2.8409 0 0 0 0.22588 1 8555 8555 5.7319 0.97584 1 51014 429 33863 33884 49954 49954 0.07119504702131962 VLFFILVLD 9 Unmodified _VLFFILVLD_ 0 0 0 REV__ENST00000487509.6_1_16:31199536-31202756:+|nuORF REV__ENST00000487509.6_1_16:31199536-31202756:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21221923828125 3 360.223083 1077.64742 NaN NaN NaN NaN NaN NaN NaN 43.846 1 41.056 40.556 41.556 -2.79 0 0 0 0.19623 1 8225 8225 0.073264 0 1 + 51015 22256 33864 33885 49955 49955 0.1117014918197583 VLFGLGGG 8 Unmodified _VLFGLGGG_ 0 0 0 REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2 REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2086486816406 2 360.207964 718.401375 NaN NaN NaN NaN NaN NaN NaN 175.48 1 175.48 174.98 175.98 0 0 0 0 0.2396 1 36354 36354 0.12286 0 1 + 51016 17659 33865 33886 49956 49956 0.030910741228126426 VLFGLGGG 8 Unmodified _VLFGLGGG_ 0 0 0 REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2 REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2085266113281 2 360.207964 718.401375 NaN NaN NaN NaN NaN NaN NaN 56.118 1 52.942 52.442 53.442 -3.1761 0 0 0 0.2396 1 10433 10433 0.12286 0 1 + 51017 17659 33865 33886 49957 49957 0.030910741228126426 VLFHHICPL 9 Unmodified _VLFHHICPL_ 0 0 0 REV__ENST00000484843.1_1_4:106638770-106744253:+|nuORF REV__ENST00000484843.1_1_4:106638770-106744253:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013854980469 3 360.200395 1077.57936 NaN NaN NaN NaN NaN NaN NaN 116.39 1 112.03 111.53 112.53 -4.3585 0 0 0 0.23508 1 22406 22406 2.9952 0.26005 1 + 51018 16490 33866 33887 49958 49958 0.043670010503319645 VLFIFVEPD 9 Unmodified _VLFIFVEPD_ 0 0 0 REV__HELLS|p.T663M|1|0.07|ENSG00000119969|chr10:94593515-94593515|C/T|missense_variant REV__HELLS|p.T663M|1|0.07|ENSG00000119969|chr10:94593515-94593515|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2000427246094 3 360.198826 1077.57465 NaN NaN NaN NaN NaN NaN NaN 148.24 1 143.08 142.58 143.58 -5.1557 0 0 0 0.23508 1 28697 28697 4.5289 2.2461 1 + 51019 15604 33867 33888 49959 49959 0.03896395388551355 VLFLALLKK 9 Unmodified _VLFLALLKK_ 0 0 0 REV__tr|U7T590|U7T590_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00485PE=4SV=1 REV__tr|U7T590|U7T590_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00485PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2633056640625 2 522.862621 1043.71069 -0.013117 -6.8583E-06 0.80621 0.00042154 0.7931 0.00041468 522.8629090883946 92.336 0.28351 92.336 92.158 92.442 0 10 7 2 0 0 0 0.60888 1 18041 18041 0.12781 0 1 933600 + 51020 25406 33868 33889 49960 49960 0.19058134689885264 VLFLFIVKLKK 11 Unmodified _VLFLFIVKLKK_ 0 0 0 REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1 REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 674.1636352539062 2 674.459959 1346.90537 NaN NaN NaN NaN NaN NaN NaN 178.36 1 178.36 177.86 178.86 0 0 0 0 0.22632 1 36951 36951 0 0 1 + 51021 25178 33869 33890 49961 49961 0.2457888577500853 VLFLKKGP 8 Unmodified _VLFLKKGP_ 0 0 0 TBC1D9|p.P1097L|1|0.25|ENSG00000109436|chr4:140622706-140622706|G/A|missense_variant TBC1D9|p.P1097L|1|0.25|ENSG00000109436|chr4:140622706-140622706|G/A|missense_variant TBC1D9|p.P1097L|1|0.25|ENSG00000109436|chr4:140622706-140622706|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 301.20037841796875 3 301.200501 900.579674 NaN NaN NaN NaN NaN NaN NaN 107.73 1 107.73 107.23 108.23 0 0 0 0 0.21486 1 21184 21184 0.40072 0 1 51022 25823 33870 33891 49962 49962 0.12540744041837115 VLFMPSRL 8 Unmodified _VLFMPSRL_ 0 0 0 REV__ENSG00000118156|ENST00000391901|ZNF541 REV__ENSG00000118156|ENST00000391901|ZNF541 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77911376953125 2 481.778231 961.541908 NaN NaN NaN NaN NaN NaN NaN 145.5 1 140.83 140.33 141.33 -4.6694 0 0 0 0.21452 1 28841 28841 13.508 3.3245 1 + 51023 15540 33871 33892 49963 49963 0.05959909784735373 VLFNFKIY 8 Unmodified _VLFNFKIY_ 0 0 0 ENST00000379380.8_1_5:130535256-130535397:+|nuORF ENST00000379380.8_1_5:130535256-130535397:+|nuORF ENST00000379380.8_1_5:130535256-130535397:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2710571289062 2 522.299853 1042.58515 -0.54677 -0.00028558 0.44192 0.00023082 -0.10485 -5.4763E-05 522.8013693051141 114.34 0.8367 109.78 109.35 110.19 -4.555 49 23 3 0 0 0 0.95284 1 21950 21950 14.582 2.9414 1 3074900 51024 9295 33872 33893 49964 49964 0.06556422833659781 VLFQIDEHKV 10 Unmodified _VLFQIDEHKV_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.1143493652344 3 409.895917 1226.66592 -0.27257 -0.00011172 1.3251 0.00054317 1.0526 0.00043145 409.89654179639354 18.169 0.20678 16.858 16.761 16.967 -1.3109 14 5 3 0 0 0 0.91149 1 2927 2927 0 0 1 314280 51025 4896 33873 33894 49965 49965 0.06165659085900188 VLFQIDEHKV 10 Unmodified _VLFQIDEHKV_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 409.895917 1226.66592 -0.059614 -2.4435E-05 0.82836 0.00033954 0.76875 0.00031511 409.89607598557336 16.649 0.10257 16.649 16.578 16.681 0 -0.1136 -0.00050971 NaN 0 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 299160 51026 4896 33873 33894 0.06165659085900188 VLFQIDEHKV 10 Unmodified _VLFQIDEHKV_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 409.895917 1226.66592 -0.42245 -0.00017316 1.2647 0.0005184 0.84226 0.00034524 409.8965165326491 18.053 0.20119 16.781 16.696 16.897 -1.2722 0.018409 2.6854E-05 NaN 0 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 432540 51027 4896 33873 33894 0.06165659085900188 VLFRGGPRGL 10 Unmodified _VLFRGGPRGL_ 0 0 0 ENST00000483409.1_1_6:7303794-7313353:-|nuORF;nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1 ENST00000483409.1_1_6:7303794-7313353:-|nuORF ENST00000483409.1_1_6:7303794-7313353:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5609130859375 3 357.885576 1070.6349 -0.25033 -8.9588E-05 0.94489 0.00033816 0.69457 0.00024858 357.88562285746394 85.579 0.85736 85.579 85.183 86.041 0 49 23 3 0 0 0 1.1218 1 16658 16658 12.228 12.198 1 5403500 51028 3331 33874 33895 49966 49966 0.10240550562321005 VLFRGGPRGL 10 Unmodified _VLFRGGPRGL_ 0 0 0 ENST00000483409.1_1_6:7303794-7313353:-|nuORF;nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1 ENST00000483409.1_1_6:7303794-7313353:-|nuORF ENST00000483409.1_1_6:7303794-7313353:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5606689453125 3 357.885576 1070.6349 -0.3553 -0.00012716 0.34915 0.00012496 -0.0061418 -2.1981E-06 357.885657447764 89.181 0.989 85.388 84.839 85.828 -3.7926 87 27 4 0 0 0 1.1138 1 17383 17383 25.997 25.933 1 39166000 51029 3331 33874 33895 49967 49967 0.10240550562321005 VLFRGGPRGL 10 Unmodified _VLFRGGPRGL_ 0 0 0 ENST00000483409.1_1_6:7303794-7313353:-|nuORF;nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1 ENST00000483409.1_1_6:7303794-7313353:-|nuORF ENST00000483409.1_1_6:7303794-7313353:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5608825683594 3 357.885576 1070.6349 0.3997 0.00014305 -0.30642 -0.00010966 0.093274 3.3382E-05 357.8853921883102 89.378 1.0627 85.334 84.855 85.918 -4.0443 82 29 4 0 0 0 1.1191 1 16978 16978 20.871 20.463 1 15424000 51030 3331 33874 33895 49968 49968 0.10240550562321005 VLFRGGPRGL 10 Unmodified _VLFRGGPRGL_ 0 0 0 ENST00000483409.1_1_6:7303794-7313353:-|nuORF;nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1 ENST00000483409.1_1_6:7303794-7313353:-|nuORF ENST00000483409.1_1_6:7303794-7313353:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5606689453125 3 357.885576 1070.6349 -0.4812 -0.00017221 1.662 0.0005948 1.1808 0.00042258 357.88568961440774 89.078 1.1929 85.328 84.673 85.866 -3.7501 58 33 3 0 0 0 0.47533 1 17032 17032 26.021 5.6062 1 3246900 51031 3331 33874 33895 49969 49969 0.10240550562321005 VLFRQGVDI 9 Unmodified _VLFRQGVDI_ 0 0 0 REV__PFKFB3|p.R220Q|1|0.35|ENSG00000170525|chr10:6220693-6220693|G/A|missense_variant REV__PFKFB3|p.R220Q|1|0.35|ENSG00000170525|chr10:6220693-6220693|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6834106445312 2 523.803291 1045.59203 NaN NaN NaN NaN NaN NaN NaN 156.87 1 151.6 151.1 152.1 -5.2712 0 0 0 0.18274 1 30432 30432 1.6919 1.3123 1 + 51032 24457 33875 33896 49970 49970 0.07105735714230832 VLFYHGQV 8 Unmodified _VLFYHGQV_ 0 0 0 REV__PALD1|p.R98H|1|0.18|ENSG00000107719|chr10:70529893-70529893|G/A|missense_variant REV__PALD1|p.R98H|1|0.18|ENSG00000107719|chr10:70529893-70529893|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.76910400390625 2 481.758352 961.502152 NaN NaN NaN NaN NaN NaN NaN 34.79 1 32.472 31.972 32.972 -2.3175 0 0 0 0.21452 1 6395 6395 13.508 0.97634 1 + 51033 24428 33876 33897 49971 49971 0.019861061056644758 VLGAAELEA 9 Unmodified _VLGAAELEA_ 0 0 0 IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant;ENSG00000167378|ENST00000422989|IRGQ IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2286376953125 2 436.739825 871.465098 -0.084972 -3.7111E-05 0.21747 9.4979E-05 0.1325 5.7868E-05 436.73985943712376 92.51 1.1214 88.702 88.174 89.296 -3.8083 70 32 3 0 0 0 0.043281 1 17777 17777 11.749 0 1 8453600 51034 5805 33877 33898 49972 49972 0.02422389769219535 VLGAGPHV 8 Unmodified _VLGAGPHV_ 0 0 0 ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENSG00000140740|ENST00000268379|UQCRC2 ENST00000563711.5_1_16:21973998-21987565:+|nuORF ENST00000563711.5_1_16:21973998-21987565:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2186584472656 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 40.315 1 40.315 39.815 40.815 0 0 0 0 0.23664 1 7497 7497 3.2813 0 1 51035 4322 33878 33899 49973 49973 0.038898788713822796 VLGAGPHV 8 Unmodified _VLGAGPHV_ 0 0 0 ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENSG00000140740|ENST00000268379|UQCRC2 ENST00000563711.5_1_16:21973998-21987565:+|nuORF ENST00000563711.5_1_16:21973998-21987565:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2184753417969 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 42.956 1 40.237 39.737 40.737 -2.7191 0 0 0 0.23664 1 8044 8044 3.2813 0 1 51036 4322 33878 33899 49974 49974 0.038898788713822796 VLGAGPHV 8 Unmodified _VLGAGPHV_ 0 0 0 ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENSG00000140740|ENST00000268379|UQCRC2 ENST00000563711.5_1_16:21973998-21987565:+|nuORF ENST00000563711.5_1_16:21973998-21987565:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2181091308594 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 42.816 1 40.21 39.71 40.71 -2.606 0 0 0 0.23664 1 7710 7710 3.2813 0 1 51037 4322 33878 33899 49975 49975 0.038898788713822796 VLGAVAMN 8 Unmodified _VLGAVAMN_ 0 0 0 REV__ENSG00000164849|ENST00000444847|GPR146 REV__ENSG00000164849|ENST00000444847|GPR146 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.72613525390625 2 387.712556 773.41056 0.25962 0.00010066 -0.083932 -3.2541E-05 0.17568 6.8115E-05 387.71244762254594 32.369 0.77428 30.342 29.798 30.572 -2.0264 52 21 3 0 0 0 0.73426 1 5651 5651 9.3474 0 1 3819600 + 51038 17716 33879 33900 49976 49976 0.01479099416826557 VLGETGGS 8 Unmodified _VLGETGGS_ 0 0 0 REV__ENSG00000186660|ENST00000316059|ZFP91 REV__ENSG00000186660|ENST00000316059|ZFP91 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2137145996094 2 360.182143 718.349734 NaN NaN NaN NaN NaN NaN NaN 38.53 1 36.088 35.588 36.588 -2.4419 0 0 0 0.23749 1 6859 6859 0.12286 0 1 + 51039 19046 33880 33901 49977 49977 -0.02070714361741466 VLGFCHLYL 9 Unmodified _VLGFCHLYL_ 0 0 0 ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A ENSG00000075673|ENST00000381946|ATP12A ENSG00000075673|ENST00000381946|ATP12A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2864990234375 2 532.783513 1063.55247 0.091169 4.8573E-05 3.228 0.0017198 3.3192 0.0017684 532.7853921323103 100.42 0.4487 96.26 96.046 96.495 -4.1594 20 12 2 0 0 0 0.47965 1 19764 19764 20.871 0 1 1993900 51040 1524 33881 33902 49978 49978 0.023238924391534965 VLGGQLGMY 9 Unmodified _VLGGQLGMY_ 0 0 0 ENSG00000105143|ENST00000594383|SLC1A6;SLC1A6|p.M377Hfs*66|1|0.13|ENSG00000105143|chr19:14956517-14956518|-/C|frameshift_variant ENSG00000105143|ENST00000594383|SLC1A6 ENSG00000105143|ENST00000594383|SLC1A6 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.1836853027344 3 313.165239 936.473888 NaN NaN NaN NaN NaN NaN NaN 88.575 1 88.575 88.075 89.075 0 0 0 0 0.23508 1 17287 17287 1.1933 0.12188 1 51041 2281 33882 33903 49979 49979 0.0031104013406775266 VLGKPIKKRI 10 Unmodified _VLGKPIKKRI_ 0 0 0 tr|U7SUH8|U7SUH8_FUSNUHPr(Ser)kinase/phosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01425PE=3SV=1 tr|U7SUH8|U7SUH8_FUSNUHPr(Ser)kinase/phosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01425PE=3SV=1 tr|U7SUH8|U7SUH8_FUSNUHPr(Ser)kinase/phosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01425PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3125 2 576.402976 1150.7914 NaN NaN NaN NaN NaN NaN NaN 149.81 1 144.61 144.11 145.11 -5.1994 0 0 0 0.22588 1 29020 29020 0.45834 0 1 51042 26208 33883 33904 49980 49980 0.22203415732769827 VLGKVNEI 8 Unmodified _VLGKVNEI_ 0 0 0 ENST00000550988.5_1_12:57926276-57926769:-|nuORF;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2 ENST00000550988.5_1_12:57926276-57926769:-|nuORF ENST00000550988.5_1_12:57926276-57926769:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2361755371094 2 436.26601 870.517468 -0.16334 -7.1259E-05 0.1576 6.8755E-05 -0.005739 -2.5038E-06 436.26603470567795 67.047 0.84029 63.939 63.547 64.387 -3.1086 51 23 3 0 0 0 0.21714 2 12983 12965;12983 43.858 7.7313 1 8549500 51043 6394 33884 33905 49981;49982 49982 0.07702972902859528 VLGKVNEI 8 Unmodified _VLGKVNEI_ 0 0 0 ENST00000550988.5_1_12:57926276-57926769:-|nuORF;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2 ENST00000550988.5_1_12:57926276-57926769:-|nuORF ENST00000550988.5_1_12:57926276-57926769:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22784423828125 2 436.26601 870.517468 0.1376 6.0032E-05 -0.072849 -3.1782E-05 0.064754 2.825E-05 436.2659331089571 67.267 0.80208 63.94 63.508 64.31 -3.3268 51 22 3 0 0 0 0.35341 1 12652 12652 34.402 2.0962 1 5325000 51044 6394 33884 33905 49983 49983 0.07702972902859528 VLGKVNEI 8 Unmodified _VLGKVNEI_ 0 0 0 ENST00000550988.5_1_12:57926276-57926769:-|nuORF;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2 ENST00000550988.5_1_12:57926276-57926769:-|nuORF ENST00000550988.5_1_12:57926276-57926769:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 436.26601 870.517468 -0.15955 -6.9607E-05 0.24246 0.00010578 0.082908 3.617E-05 436.266031878434 63.938 0.69418 63.938 63.715 64.409 0 0.016776 0.00016361 NaN 43.858 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 12022000 51045 6394 33884 33905 0.07702972902859528 VLGKVNEI 8 Unmodified _VLGKVNEI_ 0 0 0 ENST00000550988.5_1_12:57926276-57926769:-|nuORF;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2 ENST00000550988.5_1_12:57926276-57926769:-|nuORF ENST00000550988.5_1_12:57926276-57926769:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 436.26601 870.517468 0.25809 0.00011259 -0.14321 -6.2479E-05 0.11487 5.0115E-05 436.2658967400673 67.366 0.70744 63.87 63.603 64.311 -3.4965 -0.052037 -0.00017291 NaN 43.858 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7390800 51046 6394 33884 33905 0.07702972902859528 VLGLRKTTL 9 Unmodified _VLGLRKTTL_ 0 0 0 ENSG00000160703|ENST00000409109|NLRX1;NLRX1|p.L630Ffs*10|1|0.49|ENSG00000160703|chr11:119179902-119179902|G/-|frameshift_variant;ENST00000481860.6_1_11:119043673-119051967:+|nuORF;NLRX1|p.G888Vfs*13|1|0.4|ENSG00000160703|chr11:119183169-119183169|G/-|frameshift_variant;nc|ENSG00000160703|Q86UT6-2|NLRX1 ENSG00000160703|ENST00000409109|NLRX1 ENSG00000160703|ENST00000409109|NLRX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.22210693359375 3 334.221965 999.644065 NaN NaN NaN NaN NaN NaN NaN 97.409 1 97.409 96.909 97.909 0 0 0 0 0.23508 1 19089 19089 1.0715 0 1 51047 5263 33885 33906 49984 49984 0.1442289912798742 VLGLRKTTL 9 Unmodified _VLGLRKTTL_ 0 0 0 ENSG00000160703|ENST00000409109|NLRX1;NLRX1|p.L630Ffs*10|1|0.49|ENSG00000160703|chr11:119179902-119179902|G/-|frameshift_variant;ENST00000481860.6_1_11:119043673-119051967:+|nuORF;NLRX1|p.G888Vfs*13|1|0.4|ENSG00000160703|chr11:119183169-119183169|G/-|frameshift_variant;nc|ENSG00000160703|Q86UT6-2|NLRX1 ENSG00000160703|ENST00000409109|NLRX1 ENSG00000160703|ENST00000409109|NLRX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 334.2203674316406 3 334.221965 999.644065 NaN NaN NaN NaN NaN NaN NaN 133.48 1 128.84 128.34 129.34 -4.6399 0 0 0 0.23508 1 26316 26316 1.0715 0 1 51048 5263 33885 33906 49985 49985 0.1442289912798742 VLGMFYLH 8 Unmodified _VLGMFYLH_ 0 0 0 ENST00000557624.1_1_14:24808148-24809140:-|nuORF;nc|ENSG00000129465|Q9Y572-3|RIPK3;nc|ENSG00000129465|Q9Y572-2|RIPK3;ENSG00000129465|ENST00000216274|RIPK3 ENST00000557624.1_1_14:24808148-24809140:-|nuORF ENST00000557624.1_1_14:24808148-24809140:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25982666015625 2 490.257131 978.499709 NaN NaN NaN NaN NaN NaN NaN 129.4 1 124.65 124.15 125.15 -4.7408 0 0 0 0.21022 1 24898 24898 17.087 1.2394 1 51049 3566 33886 33907 49986 49986 0.009599343763397883 VLGPPVPEI 9 Unmodified _VLGPPVPEI_ 0 0 0 nc|ENSG00000136715|Q9H0E3-2|SAP130;SAP130|p.R833Kfs*17|1|0.38|ENSG00000136715|chr2:127950308-127950309|-/G|frameshift_variant;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130 nc|ENSG00000136715|Q9H0E3-2|SAP130 nc|ENSG00000136715|Q9H0E3-2|SAP130 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2330627441406 2 460.776211 919.537869 0.12137 5.5923E-05 0.25407 0.00011707 0.37544 0.00017299 460.77620870254566 157.51 0.83908 152.22 151.7 152.53 -5.2854 35 23 2 0 0 0 0.55758 1 30589 30589 18.135 9.5417 1 1281300 51050 4032 33887 33908 49987 49987 0.07488143562670757 VLGPPVPEI 9 Unmodified _VLGPPVPEI_ 0 0 0 nc|ENSG00000136715|Q9H0E3-2|SAP130;SAP130|p.R833Kfs*17|1|0.38|ENSG00000136715|chr2:127950308-127950309|-/G|frameshift_variant;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130 nc|ENSG00000136715|Q9H0E3-2|SAP130 nc|ENSG00000136715|Q9H0E3-2|SAP130 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 460.776211 919.537869 0.21862 0.00010074 -0.045656 -2.1037E-05 0.17297 7.9699E-05 460.7761144954462 151.64 0.52696 151.64 151.45 151.97 0 -0.31005 -0.00015735 NaN 18.135 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1056000 51051 4032 33887 33908 0.07488143562670757 VLGPPVPEI 9 Unmodified _VLGPPVPEI_ 0 0 0 nc|ENSG00000136715|Q9H0E3-2|SAP130;SAP130|p.R833Kfs*17|1|0.38|ENSG00000136715|chr2:127950308-127950309|-/G|frameshift_variant;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130 nc|ENSG00000136715|Q9H0E3-2|SAP130 nc|ENSG00000136715|Q9H0E3-2|SAP130 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 460.776211 919.537869 0.41391 0.00019072 0.025984 1.1973E-05 0.43989 0.00020269 460.77616382488225 157.19 0.95438 151.92 151.55 152.51 -5.2712 -0.031548 -9.1334E-05 NaN 18.135 34 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1691100 51052 4032 33887 33908 0.07488143562670757 VLGPVATTGL 10 Unmodified _VLGPVATTGL_ 0 0 0 REV__ENSG00000161082|ENST00000292672|CELF5 REV__ENSG00000161082|ENST00000292672|CELF5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2487487792969 2 464.279118 926.543683 0.0028155 1.3072E-06 0.013338 6.1924E-06 0.016153 7.4996E-06 464.27904376241236 95.231 0.87128 91.35 90.881 91.752 -3.881 57 24 3 0 0 0 0.17721 2 18249 18249;18297 46.021 0 1 6004600 + 51053 17451 33888 33909 49988;49989 49988 0.07747242074310634 VLGPVATTGL 10 Unmodified _VLGPVATTGL_ 0 0 0 REV__ENSG00000161082|ENST00000292672|CELF5 REV__ENSG00000161082|ENST00000292672|CELF5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.279118 926.543683 -0.027663 -1.2844E-05 -0.019227 -8.9265E-06 -0.04689 -2.177E-05 464.27904301310497 95.305 0.79226 91.256 90.852 91.644 -4.0496 -0.042832 1.535E-05 NaN 46.021 51 22 3 NaN NaN NaN NaN 0 NaN NaN 0 7036800 + 51054 17451 33888 33909 0.07747242074310634 VLGPVATTGL 10 Unmodified _VLGPVATTGL_ 0 0 0 REV__ENSG00000161082|ENST00000292672|CELF5 REV__ENSG00000161082|ENST00000292672|CELF5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.279118 926.543683 0.10221 4.7452E-05 -0.14128 -6.5591E-05 -0.039069 -1.8139E-05 464.27900877450406 95.428 0.75488 91.236 90.928 91.683 -4.1911 -0.062063 -9.7979E-05 NaN 46.021 47 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6060400 + 51055 17451 33888 33909 0.07747242074310634 VLGRFFLYH 9 Unmodified _VLGRFFLYH_ 0 0 0 nc|ENSG00000007541|Q9BRB3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3|PIGQ MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3265991210938 2 576.321651 1150.62875 NaN NaN NaN NaN NaN NaN NaN 122.5 1 122.5 122 123 0 0 0 0 0.19656 1 24147 24147 0.073264 0.067308 1 51056 1027 33889 33910 49990 49990 0.05946032330803064 VLGRFFLYH 9 Unmodified _VLGRFFLYH_ 0 0 0 nc|ENSG00000007541|Q9BRB3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3|PIGQ MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3218994140625 2 576.321651 1150.62875 NaN NaN NaN NaN NaN NaN NaN 127.32 1 122.52 122.02 123.02 -4.7958 0 0 0 0.19451 1 24439 24439 0.40827 0 1 51057 1027 33889 33910 49991 49991 0.05946032330803064 VLGRHKVRT 9 Unmodified _VLGRHKVRT_ 0 0 0 nc|ENSG00000179094|O15534-4|PER1;PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant;ENSG00000179094|ENST00000317276|PER1;PER1|p.L466*|1|0.14|ENSG00000179094|chr17:8147571-8147571|G/-|frameshift_variant nc|ENSG00000179094|O15534-4|PER1 nc|ENSG00000179094|O15534-4|PER1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2813720703125 2 533.335624 1064.6567 NaN NaN NaN NaN NaN NaN NaN 141.91 1 137.26 136.76 137.76 -4.6493 0 0 0 0.19656 1 28040 28040 0.029283 0 1 51058 6609 33890 33911 49992 49992 0.1269535531089332 VLGSGGFG 8 Unmodified _VLGSGGFG_ 0 0 0 ENSG00000198355|ENST00000360612|PIM3 ENSG00000198355|ENST00000360612|PIM3 ENSG00000198355|ENST00000360612|PIM3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 347.1927490234375 2 347.181946 692.34934 NaN NaN NaN NaN NaN NaN NaN 16.935 1 15.663 15.163 16.163 -1.2722 0 0 0 0.2396 1 2466 2466 0 0 1 51059 7444 33891 33912 49993 49993 -0.009140892909499598 VLGSTPHEDQ 10 Unmodified _VLGSTPHEDQ_ 0 0 0 ENST00000587439.5_1_19:36111173-36113608:+|nuORF ENST00000587439.5_1_19:36111173-36113608:+|nuORF ENST00000587439.5_1_19:36111173-36113608:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2598876953125 2 541.759278 1081.504 0.36488 0.00019767 1.5143 0.00082038 1.8792 0.0010181 541.7594110889797 142.04 0.70094 137.17 136.82 137.52 -4.8678 44 19 3 0 0 0 0.86261 1 27347 27347 6.7232 0 1 4510500 51060 11562 33892 33913 49994 49994 -0.03348929667072298 VLGTLGTPGL 10 Unmodified _VLGTLGTPGL_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2505798339844 2 464.279118 926.543683 -0.037156 -1.7251E-05 0.021871 1.0154E-05 -0.015285 -7.0966E-06 464.2791021615951 91.352 1.0164 91.352 90.896 91.912 0 61 28 3 0 0 0 0.57735 1 17873 17873 20.454 0 1 4851200 51061 6651 33893 33914 49995 49995 0.07747242074333371 VLHKNGADPD 10 Unmodified _VLHKNGADPD_ 0 0 0 ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1;DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant;DIAPH1|p.P703Hfs*65|2|0.51|ENSG00000131504|chr5:141573742-141573742|G/-|frameshift_variant;DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant ENSG00000131504|ENST00000389054|DIAPH1 ENSG00000131504|ENST00000389054|DIAPH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2643432617188 2 533.269813 1064.52507 0.33263 0.00017738 -1.538 -0.00082019 -1.2054 -0.00064281 533.2688266755295 141.97 0.14062 137.1 137.03 137.17 -4.8678 5 3 2 0 0 0 0.71097 1 27395 27395 10.074 2.7847 1 533140 51062 3681 33894 33915 49996 49996 -0.004609195675357114 VLHLLALR 8 Unmodified _VLHLLALR_ 0 0 0 ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.1963806152344 3 312.2114 933.612371 NaN NaN NaN NaN NaN NaN NaN 56.854 1 56.854 56.354 57.354 0 0 0 0 0.21486 1 10861 10861 0 0 1 51063 2329 33895 33916 49997 49997 0.14290951164684884 VLHLLALR 8 Unmodified _VLHLLALR_ 0 0 0 ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.2093505859375 3 312.2114 933.612371 NaN NaN NaN NaN NaN NaN NaN 56.909 1 56.909 56.409 57.409 0 0 0 0 0.21486 1 10873 10873 0 0 1 51064 2329 33895 33916 49998 49998 0.14290951164684884 VLHLLALR 8 Unmodified _VLHLLALR_ 0 0 0 ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.20965576171875 3 312.2114 933.612371 NaN NaN NaN NaN NaN NaN NaN 61.104 1 61.104 60.604 61.604 0 0 0 0 0.21486 1 11725 11725 0 0 1 51065 2329 33895 33916 49999 49999 0.14290951164684884 VLHRHIGSCE 10 Unmodified _VLHRHIGSCE_ 0 0 0 REV__AGAP3|p.G708V|1|0.51|ENSG00000133612|chr7:151142592-151142592|G/T|missense_variant REV__AGAP3|p.G708V|1|0.51|ENSG00000133612|chr7:151142592-151142592|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3197021484375 2 575.792932 1149.57131 0.093874 5.4052E-05 -0.90537 -0.0005213 -0.81149 -0.00046725 575.7925418452294 126.86 0.59207 122.24 121.94 122.54 -4.6172 37 16 3 0 0 0 0.85223 1 25055 25055 13.042 13.042 1 5057400 + 51066 12976 33896 33917 50000 50000 0.002508220629351854 VLHSWKRR 8 Unmodified _VLHSWKRR_ 0 0 0 ENST00000378888.9_3_1:1274015-1274675:-|nuORF ENST00000378888.9_3_1:1274015-1274675:-|nuORF ENST00000378888.9_3_1:1274015-1274675:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2646484375 2 541.322517 1080.63048 NaN NaN NaN NaN NaN NaN NaN 12.082 1 10.962 10.462 11.462 -1.1206 0 0 0 0.21486 1 1418 1418 2.5775 0.27475 1 51067 9285 33897 33918 50001 50001 0.09339086139402752 VLIAALYPEY 10 Unmodified _VLIAALYPEY_ 0 0 0 sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1;sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1 sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3219604492188 2 576.320983 1150.62741 NaN NaN NaN NaN NaN NaN NaN 115.87 1 111.28 110.78 111.78 -4.5815 0 0 0 2.8426 1 22243 22243 0.26539 0 1 51068 25758 33898 33919 50002 50002 0.05812353451369745 VLIENVASL 9 Unmodified _VLIENVASL_ 0 0 0 GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2 GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72442626953125 2 479.2844 956.554247 -0.05024 -2.4079E-05 -0.042572 -2.0404E-05 -0.092812 -4.4483E-05 479.2843523568178 146.33 0.66327 146.33 145.98 146.64 0 25 18 2 0 0 0 0.23744 1 29287 29287 43.858 7.7313 1 3416800 51069 6450 33899 33920 50003 50003 0.0742322472875685 VLIENVASL 9 Unmodified _VLIENVASL_ 0 0 0 GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2 GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant GPX2|p.W152*|1|0.31|ENSG00000176153|chr14:64939605-64939605|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72552490234375 2 479.2844 956.554247 0.13051 6.2553E-05 0.15467 7.413E-05 0.28518 0.00013668 479.2843765872167 151.03 0.62659 146.28 145.91 146.53 -4.7524 37 17 3 0 0 0 0.07121 1 30006 30006 58.679 14.821 1 3663000 51070 6450 33899 33920 50004 50004 0.0742322472875685 VLIFNSSLS 9 Unmodified _VLIFNSSLS_ 0 0 0 REV__nc|ENSG00000215695|Q92681|RSC1A1 REV__nc|ENSG00000215695|Q92681|RSC1A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2754821777344 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 146.4 1 146.4 145.9 146.9 0 0 0 0 0.20699 1 29272 29272 21.537 0 1 + 51071 24271 33900 33921 50005 50005 0.04846938211710494 VLIKIIKLF 9 Unmodified _VLIKIIKLF_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.77880859375 2 543.886096 1085.75764 0.28499 0.000155 -0.33183 -0.00018048 -0.046839 -2.5475E-05 544.3871991747372 144.06 0.20564 139.39 139.33 139.54 -4.6694 6 5 2 0 0 0 0.88237 1 28531 28531 0.6015 0.076735 1 2939200 51072 1348 33901 33922 50006 50006 0.21818994241016298 VLIKKKLILIQ 11 Unmodified _VLIKKKLILIQ_ 0 0 0 REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant REV__WDR49|p.K607Nfs*9|2|0.38|ENSG00000174776|chr3:167505314-167505314|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2266845703125 3 436.982886 1307.92683 NaN NaN NaN NaN NaN NaN NaN 32.322 1 30.091 29.591 30.591 -2.2305 0 0 0 0.23698 1 5886 5886 0 0 1 + 51073 18430 33902 33923 50007 50007 0.2851827080376097 VLIKKPPG 8 Unmodified _VLIKKPPG_ 0 0 0 REV__TTYH3-ADSSL1|1|fusion REV__TTYH3-ADSSL1|1|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 426.2907409667969 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 36.533 1 36.533 36.033 37.033 0 0 0 0 0.21486 1 6736 6736 0.79363 0 1 + 51074 14029 33903 33924 50008 50008 0.13276457524807483 VLIKKPPG 8 Unmodified _VLIKKPPG_ 0 0 0 REV__TTYH3-ADSSL1|1|fusion REV__TTYH3-ADSSL1|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 426.2912902832031 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 20.686 1 19.289 18.789 19.789 -1.3966 0 0 0 0.21486 1 3468 3468 2.8892 2.0956 1 + 51075 14029 33903 33924 50009 50009 0.13276457524807483 VLIKKPPG 8 Unmodified _VLIKKPPG_ 0 0 0 REV__TTYH3-ADSSL1|1|fusion REV__TTYH3-ADSSL1|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.2908630371094 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 61.701 1 58.332 57.832 58.832 -3.3694 0 0 0 0.21486 1 11507 11507 0.79363 0 1 + 51076 14029 33903 33924 50010 50010 0.13276457524807483 VLIKKPPG 8 Unmodified _VLIKKPPG_ 0 0 0 REV__TTYH3-ADSSL1|1|fusion REV__TTYH3-ADSSL1|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 426.2906799316406 2 426.289288 850.564024 NaN NaN NaN NaN NaN NaN NaN 38.923 1 36.518 36.018 37.018 -2.4049 0 0 0 0.21486 1 6938 6938 0.79363 0 1 + 51077 14029 33903 33924 50011 50011 0.13276457524807483 VLIKLGTIVM 10 Unmodified _VLIKLGTIVM_ 0 0 0 OR52R1|p.V144L|1|0.09|ENSG00000279270|chr11:4803951-4803951|C/G|missense_variant OR52R1|p.V144L|1|0.09|ENSG00000279270|chr11:4803951-4803951|C/G|missense_variant OR52R1|p.V144L|1|0.09|ENSG00000279270|chr11:4803951-4803951|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7872314453125 2 543.851396 1085.68824 NaN NaN NaN NaN NaN NaN NaN 11.57 1 10.666 10.166 11.166 -0.90401 0 0 0 2.8426 1 1542 1542 0 0 1 51078 12732 33904 33925 50012 50012 0.1488216722998459 VLIKLGTIVM 10 Unmodified _VLIKLGTIVM_ 0 0 0 OR52R1|p.V144L|1|0.09|ENSG00000279270|chr11:4803951-4803951|C/G|missense_variant OR52R1|p.V144L|1|0.09|ENSG00000279270|chr11:4803951-4803951|C/G|missense_variant OR52R1|p.V144L|1|0.09|ENSG00000279270|chr11:4803951-4803951|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7872314453125 2 543.851396 1085.68824 NaN NaN NaN NaN NaN NaN NaN 11.585 1 10.681 10.181 11.181 -0.90401 0 0 0 0.22588 1 1544 1544 0 0 1 51079 12732 33904 33925 50013 50013 0.1488216722998459 VLILNLQLG 9 Unmodified _VLILNLQLG_ 0 0 0 ENSG00000134216|ENST00000369740|CHIA;CHIA|p.N312Mfs*68|1|0.24|ENSG00000134216|chr1:111319135-111319135|A/-|frameshift_variant ENSG00000134216|ENST00000369740|CHIA ENSG00000134216|ENST00000369740|CHIA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 491.27349853515625 2 491.81841 981.622267 -0.41862 -0.00020588 0.67631 0.00033262 0.2577 0.00012674 491.81870221841814 108.38 0.86747 104.06 103.66 104.52 -4.32 54 24 3 0 0 0 0.46004 1 21415 21415 2.6312 0.70373 1 3885400 51080 3832 33905 33926 50014 50014 0.1307209437943584 VLILNLQLG 9 Unmodified _VLILNLQLG_ 0 0 0 ENSG00000134216|ENST00000369740|CHIA;CHIA|p.N312Mfs*68|1|0.24|ENSG00000134216|chr1:111319135-111319135|A/-|frameshift_variant ENSG00000134216|ENST00000369740|CHIA ENSG00000134216|ENST00000369740|CHIA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 491.81841 981.622267 -0.071686 -3.5256E-05 0.47409 0.00023317 0.40241 0.00019791 491.8185678441868 108.63 0.75128 104.18 103.75 104.5 -4.4518 0.029506 2.1786E-06 NaN 2.6312 54 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5071200 51081 3832 33905 33926 0.1307209437943584 VLILNLQLG 9 Unmodified _VLILNLQLG_ 0 0 0 ENSG00000134216|ENST00000369740|CHIA;CHIA|p.N312Mfs*68|1|0.24|ENSG00000134216|chr1:111319135-111319135|A/-|frameshift_variant ENSG00000134216|ENST00000369740|CHIA ENSG00000134216|ENST00000369740|CHIA MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 491.81841 981.622267 0.45356 0.00022307 0.022015 1.0828E-05 0.47558 0.0002339 491.81828992514426 108.36 0.86482 104.22 103.77 104.64 -4.135 0.067451 -0.0004425 NaN 2.6312 53 24 3 NaN NaN NaN NaN 0 NaN NaN 0 2851600 51082 3832 33905 33926 0.1307209437943584 VLIPLGLDLK 10 Unmodified _VLIPLGLDLK_ 0 0 0 ENST00000598240.1_1_19:19105804-19136912:-|nuORF ENST00000598240.1_1_19:19105804-19136912:-|nuORF ENST00000598240.1_1_19:19105804-19136912:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2650146484375 2 540.854993 1079.69543 0.29736 0.00016083 3.4642 0.0018736 3.7616 0.0020345 540.8577023541321 145.53 0.20937 145.53 145.48 145.69 0 7 5 2 0 0 0 0.91049 1 29091 29091 8.7454 2.0222 1 3297600 51083 11682 33906 33927 50015 50015 0.15877223102029348 VLIPWVFMF 9 Unmodified _VLIPWVFMF_ 0 0 0 nc|ENSG00000016602|Q14CN2-2|CLCA4 nc|ENSG00000016602|Q14CN2-2|CLCA4 nc|ENSG00000016602|Q14CN2-2|CLCA4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.318115234375 2 576.319731 1150.62491 NaN NaN NaN NaN NaN NaN NaN 4.8066 1 4.1804 3.6804 4.6804 -0.62626 0 0 0 0.23508 1 158 158 0.6015 0.076735 1 51084 12210 33907 33928 50016 50016 0.05562226512711277 VLISGVVHEI 10 Unmodified _VLISGVVHEI_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2857666015625 2 533.318774 1064.623 0.10219 5.4502E-05 0.079262 4.2272E-05 0.18146 9.6774E-05 533.3186706240457 137.91 0.76253 133.27 133.01 133.77 -4.6413 38 21 3 0 0 0 0.21256 1 27217 27217 49.933 15.001 1 3068100 51085 1085 33908 33929 50017 50017 0.09326889028466212 VLISGVVHEI 10 Unmodified _VLISGVVHEI_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2859497070312 2 533.318774 1064.623 0.44457 0.0002371 0.31934 0.00017031 0.76391 0.00040741 533.3190566699537 138.3 0.6609 133.38 133.11 133.77 -4.9216 28 18 2 0 0 0 0.087069 1 26632 26632 65.235 24.996 1 2348500 51086 1085 33908 33929 50018 50018 0.09326889028466212 VLISGVVHEI 10 Unmodified _VLISGVVHEI_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2752075195312 2 533.318774 1064.623 0.30106 0.00016056 0.2366 0.00012618 0.53766 0.00028675 533.3187799680688 138.43 0.70468 133.59 133.27 133.97 -4.84 25 19 2 0 0 0 0.072053 1 26692 26692 74.929 27.335 1 2174900 51087 1085 33908 33929 50019 50019 0.09326889028466212 VLIVGSGLTA 10 Unmodified _VLIVGSGLTA_ 0 0 0 nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2 nc|ENSG00000164823|Q9Y236|OSGIN2 nc|ENSG00000164823|Q9Y236|OSGIN2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2518310546875 2 465.286943 928.559333 0.23882 0.00011112 -0.25956 -0.00012077 -0.02074 -9.65E-06 465.2867313820817 72.398 0.75752 68.771 68.406 69.164 -3.6275 59 20 4 0 0 0 0.1492 1 13712 13712 3.104 0 1 14297000 51088 5568 33909 33930 50020 50020 0.09219528591358994 VLIVLKSF 8 Unmodified _VLIVLKSF_ 0 0 0 REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|229|1|anti-sense REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|229|1|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23870849609375 2 459.804771 917.59499 -0.039254 -1.8049E-05 0.58343 0.00026827 0.54418 0.00025022 459.8049573697246 63.67 0.52675 60.672 60.42 60.947 -2.9975 22 14 2 0 0 0 0.88997 1 12361 12361 0.12286 0 1 1500800 + 51089 23773 33910 33931 50021 50021 0.13289610839046873 VLIYEQVRL 9 Unmodified _VLIYEQVRL_ 0 0 0 ENSG00000107954|ENST00000369780|NEURL1;nc|ENSG00000107954|O76050-2|NEURL1;NEURL1|p.R98C|1|0.26|ENSG00000107954|chr10:103571078-103571078|C/T|missense_variant ENSG00000107954|ENST00000369780|NEURL1 ENSG00000107954|ENST00000369780|NEURL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 566.4104614257812 2 566.839874 1131.66519 NaN NaN NaN NaN NaN NaN NaN 173.73 1 173.73 173.23 174.23 0 0 0 0 0.19622 1 35940 35940 0.96228 0 1 51090 2451 33911 33932 50022 50022 0.10462864436840391 VLIYETLDL 9 Unmodified _VLIYETLDL_ 0 0 0 sp|P69334|US18_HCMVATransmembraneproteinUS18OS=Humancytomegalovirus(strainAD169)OX=10360GN=US18PE=3SV=1;sp|F5HE69|US18_HCMVMTransmembraneproteinUS18OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US18PE=3SV=1 sp|P69334|US18_HCMVATransmembraneproteinUS18OS=Humancytomegalovirus(strainAD169)OX=10360GN=US18PE=3SV=1 sp|P69334|US18_HCMVATransmembraneproteinUS18OS=Humancytomegalovirus(strainAD169)OX=10360GN=US18PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20684814453125 3 360.205869 1077.59578 NaN NaN NaN NaN NaN NaN NaN 118.34 1 113.84 113.34 114.34 -4.502 0 0 0 0.23508 1 23334 23334 8.1555 1.9497 1 51091 25734 33912 33933 50023 50023 0.060083606974330905 VLKAKKKT 8 Unmodified _VLKAKKKT_ 0 0 0 nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;nc|ENSG00000205726|Q15811-5|ITSN1;ITSN1|p.P1076Tfs*2|1|0.25|ENSG00000205726|chr21:33826852-33826853|-/A|frameshift_variant;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;CON__ENSEMBL:ENSBTAP00000001528 nc|ENSG00000205726|Q15811-4|ITSN1 nc|ENSG00000205726|Q15811-4|ITSN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.8825988769531 3 305.883172 914.627687 NaN NaN NaN NaN NaN NaN NaN 7.8297 1 6.8148 6.3148 7.3148 -1.0148 0 0 0 0.21486 1 680 680 0 0 1 + 51092 7655 33913 33934 50024 50024 0.16695817961874582 VLKARKVD 8 Unmodified _VLKARKVD_ 0 0 0 REV__tr|U7T1U9|U7T1U9_FUSNUSmallribosomalsubunitproteinuS14OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsNPE=3SV=1 REV__tr|U7T1U9|U7T1U9_FUSNUSmallribosomalsubunitproteinuS14OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsNPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16522216796875 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 13.552 1 13.552 13.052 14.052 0 0 0 0 0.21486 1 1963 1963 0.45834 0 1 + 51093 25294 33914 33935 50025 50025 0.11986056922410171 VLKCEWWCH 9 Unmodified _VLKCEWWCH_ 0 0 0 REV__L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|8|2|sense REV__L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|8|2|sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2777099609375 2 602.275529 1202.53651 NaN NaN NaN NaN NaN NaN NaN 7.9681 1 7.289 6.789 7.789 -0.67913 0 0 0 0.23508 1 779 779 0.52476 0.066424 1 + 51094 22148 33915 33936 50026 50026 -0.05666137069397337 VLKEIVERV 9 Unmodified _VLKEIVERV_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.1469421386719 3 362.229008 1083.66519 -0.077666 -2.8133E-05 -0.94898 -0.00034375 -1.0266 -0.00037188 362.2290001565916 83.547 0.84464 83.547 83.185 84.029 0 42 23 2 0 0 0 0.10782 1 16243 16243 51.415 37.01 1 4705400 51095 3922 33916 33937 50027 50027 0.12670864436836382 VLKEKVSLNI 10 Unmodified _VLKEKVSLNI_ 0 0 0 ENST00000443016.1_1_10:11607160-11607337:-|nuORF ENST00000443016.1_1_10:11607160-11607337:-|nuORF ENST00000443016.1_1_10:11607160-11607337:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.21942138671875 3 381.576296 1141.70706 -0.097615 -3.7248E-05 0.47621 0.00018171 0.37859 0.00014446 381.5763808843336 30.099 0.42305 30.099 29.849 30.272 0 14 11 2 0 0 0 1.1313 1 5401 5401 3.8763 0 1 610770 51096 9907 33917 33938 50028 50028 0.14187420125381323 VLKEKVSLNI 10 Unmodified _VLKEKVSLNI_ 0 0 0 ENST00000443016.1_1_10:11607160-11607337:-|nuORF ENST00000443016.1_1_10:11607160-11607337:-|nuORF ENST00000443016.1_1_10:11607160-11607337:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2194519042969 3 381.576296 1141.70706 -0.21113 -8.0561E-05 0.30485 0.00011632 0.09372 3.5761E-05 381.5763475866309 32.228 0.34239 30.08 29.864 30.207 -2.1483 15 9 2 0 0 0 1.1313 1 5567 5567 3.8763 0 1 803650 51097 9907 33917 33938 50029 50029 0.14187420125381323 VLKEYLDNV 9 Unmodified _VLKEYLDNV_ 0 0 0 nc|ENSG00000117528|P28288-2|ABCD3;ENSG00000117528|ENST00000370214|ABCD3 nc|ENSG00000117528|P28288-2|ABCD3 nc|ENSG00000117528|P28288-2|ABCD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7816162109375 2 546.800414 1091.58628 0.22222 0.00012151 0.043975 2.4046E-05 0.2662 0.00014556 546.8004264812614 100.16 0.56036 96.001 95.728 96.288 -4.1594 30 15 3 0 0 0 0.058839 2 19680 19680;19681 59.013 31.884 1 5409000 51098 2992 33918 33939 50030;50031 50030 0.04414592411899321 VLKEYLDNV 9 Unmodified _VLKEYLDNV_ 0 0 0 nc|ENSG00000117528|P28288-2|ABCD3;ENSG00000117528|ENST00000370214|ABCD3 nc|ENSG00000117528|P28288-2|ABCD3 nc|ENSG00000117528|P28288-2|ABCD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.774169921875 2 546.800414 1091.58628 0.35682 0.00019511 0.27596 0.00015089 0.63278 0.000346 546.8004848700496 99.977 0.7881 95.988 95.727 96.516 -3.9895 44 22 3 0 0 0 0.15889 3 19188 19188;19189;19214 32.616 16.342 1 4856900 51099 2992 33918 33939 50032;50033;50034 50032 0.04414592411899321 VLKEYLDNV 9 Unmodified _VLKEYLDNV_ 0 0 0 nc|ENSG00000117528|P28288-2|ABCD3;ENSG00000117528|ENST00000370214|ABCD3 nc|ENSG00000117528|P28288-2|ABCD3 nc|ENSG00000117528|P28288-2|ABCD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.800414 1091.58628 0.25726 0.00014067 -0.092437 -5.0545E-05 0.16482 9.0125E-05 546.800382729784 96.223 0.72755 96.223 95.871 96.598 0 0.15069 -0.00020221 NaN 59.013 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 5079600 51100 2992 33918 33939 0.04414592411899321 VLKEYLDNV 9 Unmodified _VLKEYLDNV_ 0 0 0 nc|ENSG00000117528|P28288-2|ABCD3;ENSG00000117528|ENST00000370214|ABCD3 nc|ENSG00000117528|P28288-2|ABCD3 nc|ENSG00000117528|P28288-2|ABCD3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.800414 1091.58628 0.29554 0.0001616 0.22548 0.00012329 0.52102 0.00028489 546.8003852676824 100.38 0.71958 96.079 95.678 96.398 -4.297 0.0064018 0.00014547 NaN 59.013 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5020800 51101 2992 33918 33939 0.04414592411899321 VLKGKIRP 8 Unmodified _VLKGKIRP_ 0 0 0 ENSG00000120820|ENST00000360814|GLT8D2 ENSG00000120820|ENST00000360814|GLT8D2 ENSG00000120820|ENST00000360814|GLT8D2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.2099914550781 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 55.764 1 55.764 55.264 56.264 0 0 0 0 0.21486 1 10649 10649 0 0 1 51102 3156 33919 33940 50035 50035 0.1539495116468288 VLKIKNIK 8 Unmodified _VLKIKNIK_ 0 0 0 REV__ENSG00000135968|ENST00000309863|GCC2 REV__ENSG00000135968|ENST00000309863|GCC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 319.2098388671875 3 319.226939 954.658987 NaN NaN NaN NaN NaN NaN NaN 176.89 1 171.99 171.49 172.49 -4.9008 0 0 0 0.21486 1 35272 35272 0 0 1 + 51103 16304 33920 33941 50036 50036 0.17984390995968624 VLKIVNIIFWN 11 Unmodified _VLKIVNIIFWN_ 0 0 0 REV__ENSG00000116005|ENST00000433351|PCYOX1 REV__ENSG00000116005|ENST00000433351|PCYOX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7551574707031 3 453.611341 1357.81219 NaN NaN NaN NaN NaN NaN NaN 105.25 1 100.87 100.37 101.37 -4.3764 0 0 0 0.22632 1 20176 20176 1.4551 1.4113 1 + 51104 15460 33921 33942 50037 50037 0.1475996132178352 VLKKIKKKKK 10 Unmodified _VLKKIKKKKK_ 0 0 0 nc|ENSG00000081019|Q5VWQ0-4|RSBN1;ENSG00000081019|ENST00000261441|RSBN1 nc|ENSG00000081019|Q5VWQ0-4|RSBN1 nc|ENSG00000081019|Q5VWQ0-4|RSBN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 620.9616088867188 2 620.9632 1239.91185 NaN NaN NaN NaN NaN NaN NaN 11.627 1 10.561 10.061 11.061 -1.0664 0 0 0 0.22588 1 1334 1334 0 0 1 51105 1623 33922 33943 50038 50038 0.30148823726381124 VLKKKKRF 8 Unmodified _VLKKKKRF_ 0 0 0 REV__ENST00000601728.1_1_19:23309373-23309649:-|nuORF REV__ENST00000601728.1_1_19:23309373-23309649:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.701904296875 2 523.863486 1045.71242 0.18179 9.5234E-05 2.2499 0.0011786 2.4317 0.0012739 524.3646792771935 134.04 0.58456 134.04 133.66 134.25 0 19 16 2 0 0 0 1.0271 1 26485 26485 0.69038 0.088878 1 4649400 + 51106 23421 33923 33944 50039 50039 0.19139188498502335 VLKKLKLVLP 10 Unmodified _VLKKLKLVLP_ 0 0 0 REV__MX1|p.G282Afs*9|1|0.29|ENSG00000157601|chr21:41441827-41441827|G/-|frameshift_variant REV__MX1|p.G282Afs*9|1|0.29|ENSG00000157601|chr21:41441827-41441827|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 575.9154052734375 2 575.917927 1149.8213 NaN NaN NaN NaN NaN NaN NaN 164.09 1 159.3 158.8 159.8 -4.7898 0 0 0 2.8426 1 32766 32766 0 0 1 + 51107 17301 33924 33945 50040 50040 0.25238354678094765 VLKKLKLVLP 10 Unmodified _VLKKLKLVLP_ 0 0 0 REV__MX1|p.G282Afs*9|1|0.29|ENSG00000157601|chr21:41441827-41441827|G/-|frameshift_variant REV__MX1|p.G282Afs*9|1|0.29|ENSG00000157601|chr21:41441827-41441827|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3116455078125 2 575.917927 1149.8213 NaN NaN NaN NaN NaN NaN NaN 75.906 1 72.183 71.683 72.683 -3.7227 0 0 0 0.22588 1 14363 14363 0 0 1 + 51108 17301 33924 33945 50041 50041 0.25238354678094765 VLKLNKHIT 9 Unmodified _VLKLNKHIT_ 0 0 0 ZNF521|p.K582T|1|0.11|ENSG00000198795|chr18:25226173-25226173|T/G|missense_variant ZNF521|p.K582T|1|0.11|ENSG00000198795|chr18:25226173-25226173|T/G|missense_variant ZNF521|p.K582T|1|0.11|ENSG00000198795|chr18:25226173-25226173|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2835693359375 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 146.46 1 141.46 140.96 141.96 -5 0 0 0 0.23508 1 28342 28342 7.2892 0 1 51109 26627 33925 33946 50042 50042 0.1408658801931324 VLKLRITQRF 10 Unmodified _VLKLRITQRF_ 0 0 0 REV__PPARA|p.R128Q|1|0.21|ENSG00000186951|chr22:46218276-46218276|G/A|missense_variant REV__PPARA|p.R128Q|1|0.21|ENSG00000186951|chr22:46218276-46218276|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.246337890625 3 425.274952 1272.80303 NaN NaN NaN NaN NaN NaN NaN 153.45 1 148.68 148.18 149.18 -4.7684 0 0 0 0.22588 1 30496 30496 0.15932 0 1 + 51110 24497 33926 33947 50043 50043 0.17753612756087023 VLKMLALRQ 9 Unmodified _VLKMLALRQ_ 0 0 0 ENSG00000007314|ENST00000435607|SCN4A ENSG00000007314|ENST00000435607|SCN4A ENSG00000007314|ENST00000435607|SCN4A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.5606689453125 3 357.895083 1070.66342 NaN NaN NaN NaN NaN NaN NaN 133.12 1 128.27 127.77 128.77 -4.8527 0 0 0 0.19636 1 25573 25573 2.4985 2.4985 1 51111 1021 33927 33948 50044 50044 0.13091532147223006 VLKPLEEIIP 10 Unmodified _VLKPLEEIIP_ 0 0 0 tr|U7SZN9|U7SZN9_FUSNUBifunctionalfolatesynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00813PE=3SV=1 tr|U7SZN9|U7SZN9_FUSNUBifunctionalfolatesynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00813PE=3SV=1 tr|U7SZN9|U7SZN9_FUSNUBifunctionalfolatesynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00813PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3333129882812 2 575.857732 1149.70091 0.24306 0.00013997 2.2152 0.0012756 2.4582 0.0014156 576.3602282349455 152.53 0.17746 147.29 147.21 147.39 -5.2365 5 4 2 0 0 0 0.75676 1 29570 29570 3.5965 0.31518 1 1997100 51112 26302 33928 33949 50045 50045 0.13204901893868737 VLKRGLKRI 9 Unmodified _VLKRGLKRI_ 0 0 0 TCP1|p.D315G|1|0.08|ENSG00000120438|chr6:159780964-159780964|T/C|missense_variant TCP1|p.D315G|1|0.08|ENSG00000120438|chr6:159780964-159780964|T/C|missense_variant TCP1|p.D315G|1|0.08|ENSG00000120438|chr6:159780964-159780964|T/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2845458984375 2 541.879668 1081.74478 0.14103 7.6419E-05 -0.46685 -0.00025298 -0.32583 -0.00017656 542.3801998048324 144.75 0.10757 139.68 139.59 139.7 -5.0671 4 2 2 0 0 0 0.87258 1 27923 27923 4.3292 0.38484 1 3715400 51113 25830 33929 33950 50046 50046 0.20717975901516184 VLKRGLKRI 9 Unmodified _VLKRGLKRI_ 0 0 0 TCP1|p.D315G|1|0.08|ENSG00000120438|chr6:159780964-159780964|T/C|missense_variant TCP1|p.D315G|1|0.08|ENSG00000120438|chr6:159780964-159780964|T/C|missense_variant TCP1|p.D315G|1|0.08|ENSG00000120438|chr6:159780964-159780964|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 541.879668 1081.74478 0.39191 0.00021237 -2.6479 -0.0014348 -2.256 -0.0012225 542.378091323675 144.96 0.20584 140.01 139.9 140.1 -4.9445 0.16732 -0.0013526 NaN 4.3292 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1496900 51114 25830 33929 33950 0.20717975901516184 VLKSKIKY 8 Unmodified _VLKSKIKY_ 0 0 0 REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|74|3|anti-sense REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|74|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.264892578125 2 489.820953 977.627353 NaN NaN NaN NaN NaN NaN NaN 107.8 1 103.39 102.89 103.89 -4.4121 0 0 0 0.23294 1 20682 20682 0.12286 0 1 + 51115 24791 33930 33951 50047 50047 0.1376439824202862 VLKSKIKY 8 Unmodified _VLKSKIKY_ 0 0 0 REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|74|3|anti-sense REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|74|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.264892578125 2 489.820953 977.627353 NaN NaN NaN NaN NaN NaN NaN 107.81 1 103.4 102.9 103.9 -4.4121 0 0 0 0.21486 1 20684 20684 10.183 2.2732 1 + 51116 24791 33930 33951 50048 50048 0.1376439824202862 VLKVERGK 8 Unmodified _VLKVERGK_ 0 0 0 REV__ENST00000508249.1_2_4:103747817-103749216:-|nuORF REV__ENST00000508249.1_2_4:103747817-103749216:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650390625 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 62.712 1 62.712 62.212 63.212 0 0 0 0 0.2386 1 12046 12046 0.12286 0 1 + 51117 22508 33931 33952 50049 50049 0.1198605692242154 VLLANLTKWCV 11 Unmodified _VLLANLTKWCV_ 0 0 0 ENST00000370620.5_1_X:135749294-135749660:-|nuORF ENST00000370620.5_1_X:135749294-135749660:-|nuORF ENST00000370620.5_1_X:135749294-135749660:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7791137695312 2 630.362659 1258.71076 0.89037 0.00056126 1.1826 0.00074547 2.073 0.0013067 630.3633490271397 109.53 0.73537 105.34 105.02 105.75 -4.1826 46 20 3 0 0 0 0.89764 1 21135 21135 17.113 1.2657 1 7587000 51118 9142 33932 33953 50050 50050 0.09175766627572557 VLLDHLSLA 9 Unmodified _VLLDHLSLA_ 0 0 0 ENST00000468862.5_1_3:159706816-159710915:+|nuORF;ENST00000496308.1_1_3:159706816-159711351:+|nuORF;ENSG00000168811|ENST00000699704|IL12A ENST00000468862.5_1_3:159706816-159710915:+|nuORF ENST00000468862.5_1_3:159706816-159710915:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2666931152344 2 490.792392 979.570232 0.17997 8.8326E-05 -0.21969 -0.00010782 -0.039729 -1.9499E-05 490.7921794803429 145.26 0.84138 140.59 140.16 141 -4.6694 40 23 2 0 0 0 0.28156 1 28750 28750 48.346 16.04 1 5386600 51119 5938 33933 33954 50051 50051 0.07962930965652504 VLLDHLSLA 9 Unmodified _VLLDHLSLA_ 0 0 0 ENST00000468862.5_1_3:159706816-159710915:+|nuORF;ENST00000496308.1_1_3:159706816-159711351:+|nuORF;ENSG00000168811|ENST00000699704|IL12A ENST00000468862.5_1_3:159706816-159710915:+|nuORF ENST00000468862.5_1_3:159706816-159710915:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2717590332031 2 490.792392 979.570232 0.18597 9.1272E-05 0.30134 0.00014789 0.48731 0.00023917 490.7923550121952 145.69 0.68701 140.58 140.28 140.96 -5.1108 35 19 3 0 0 0 0.096847 1 28193 28193 61.357 21.4 1 4418100 51120 5938 33933 33954 50052 50052 0.07962930965652504 VLLDHLSLA 9 Unmodified _VLLDHLSLA_ 0 0 0 ENST00000468862.5_1_3:159706816-159710915:+|nuORF;ENST00000496308.1_1_3:159706816-159711351:+|nuORF;ENSG00000168811|ENST00000699704|IL12A ENST00000468862.5_1_3:159706816-159710915:+|nuORF ENST00000468862.5_1_3:159706816-159710915:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2593078613281 2 490.792392 979.570232 0.075067 3.6843E-05 -0.025651 -1.2589E-05 0.049416 2.4253E-05 490.79233558868856 145.57 0.62411 140.63 140.34 140.97 -4.9445 32 17 2 0 0 0 0.13083 1 28157 28157 31.728 25.241 1 5842400 51121 5938 33933 33954 50053 50053 0.07962930965652504 VLLDRYSL 8 Unmodified _VLLDRYSL_ 0 0 0 REV__ENST00000469937.2_1_7:46729000-46799342:-|nuORF REV__ENST00000469937.2_1_7:46729000-46799342:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2757568359375 2 489.784567 977.554582 0.030686 1.503E-05 1.0998 0.00053867 1.1305 0.0005537 489.78474598954415 107.87 0.48859 103.45 103.16 103.65 -4.4121 16 13 2 0 0 0 0.12867 1 20720 20720 57.471 21.344 1 785210 + 51122 22023 33934 33955 50054 50054 0.06490644448604144 VLLDRYSL 8 Unmodified _VLLDRYSL_ 0 0 0 REV__ENST00000469937.2_1_7:46729000-46799342:-|nuORF REV__ENST00000469937.2_1_7:46729000-46799342:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.257568359375 2 489.784567 977.554582 NaN NaN NaN NaN NaN NaN NaN 107.56 1 103.43 102.93 103.93 -4.135 0 0 0 0.22665 1 20690 20690 1.7423 0 1 + 51123 22023 33934 33955 50055 50055 0.06490644448604144 VLLDSVEKL 9 Unmodified _VLLDSVEKL_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 508.2696838378906 2 508.305332 1014.59611 -0.10314 -5.2426E-05 -1.2654 -0.00064323 -1.3686 -0.00069565 508.30501364964226 132.59 0.57495 127.95 127.62 128.2 -4.6399 29 15 3 0 0 0 0.47592 1 26103 26103 30.703 12.33 1 2259000 51124 5110 33935 33956 50056 50056 0.08939780417290422 VLLDSVEKL 9 Unmodified _VLLDSVEKL_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 508.305332 1014.59611 -0.33893 -0.00017228 -3.01 -0.00153 -3.3489 -0.0017023 508.30545141638976 133.03 0.57474 128.18 127.78 128.35 -4.8528 0.061983 -0.00069859 NaN 30.703 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1559200 51125 5110 33935 33956 0.08939780417290422 VLLDSVEKL 9 Unmodified _VLLDSVEKL_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 508.305332 1014.59611 0.12664 6.4372E-05 -3.0785 -0.0015648 -2.9519 -0.0015005 508.80474047739403 133.03 0.64064 128.23 127.79 128.43 -4.799 0.10863 -0.00076828 NaN 30.703 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1187400 51126 5110 33935 33956 0.08939780417290422 VLLELLLL 8 Unmodified _VLLELLLL_ 0 0 0 REV__ENST00000487134.5_1_19:54927741-54947306:+|nuORF REV__ENST00000487134.5_1_19:54927741-54947306:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 309.18231201171875 3 309.215928 924.625956 NaN NaN NaN NaN NaN NaN NaN 48.643 1 45.774 45.274 46.274 -2.869 0 0 0 0.21486 1 9203 9203 0 0 1 + 51127 22251 33936 33957 50057 50057 0.16062764153298303 VLLESEQFL 9 Unmodified _VLLESEQFL_ 0 0 0 ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 539.5694580078125 2 539.294965 1076.57538 0.26704 0.00014402 1.3841 0.00074644 1.6511 0.00089046 539.2954447600623 163.11 0.55905 163.11 162.76 163.32 0 25 15 3 0 0 0 0.60061 1 32789 32789 19.439 10.092 1 14378000 51128 4288 33937 33958 50058 50058 0.04015190037625871 VLLETTWDS 9 Unmodified _VLLETTWDS_ 0 0 0 REV__ENSG00000135763|ENST00000258243|URB2 REV__ENSG00000135763|ENST00000258243|URB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2606811523438 2 532.268947 1062.52334 0.10367 5.5179E-05 0.24233 0.00012898 0.34599 0.00018416 532.2690177628067 141.27 0.93837 136.62 136.19 137.13 -4.6493 64 26 3 0 0 0 0.67531 1 28008 28008 7.9102 0.3012 1 18903000 + 51129 16288 33938 33959 50059 50059 -0.005419733761527823 VLLFAKKLY 9 Unmodified _VLLFAKKLY_ 0 0 0 REV__nc|ENSG00000184371|P09603-2|CSF1 REV__nc|ENSG00000184371|P09603-2|CSF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7838134765625 2 547.852253 1093.68995 NaN NaN NaN NaN NaN NaN NaN 144.48 1 139.41 138.91 139.91 -5.0671 0 0 0 0.1966 1 27875 27875 0.40827 0.20141 1 + 51130 18893 33939 33960 50060 50060 0.14685544310236764 VLLFALLLLA 10 Unmodified _VLLFALLLLA_ 0 0 0 ENSG00000184933|ENST00000641196|OR6A2 ENSG00000184933|ENST00000641196|OR6A2 ENSG00000184933|ENST00000641196|OR6A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7755126953125 2 543.370278 1084.726 0.19035 0.00010343 1.8396 0.0009996 2.03 0.001103 543.3723035352242 158.29 0.14551 153.01 152.94 153.09 -5.2748 5 3 2 0 0 0 1.133 1 30716 30716 0.043787 0 1 374760 51131 6944 33940 33961 50061 50061 0.18703001487097026 VLLFFVLLG 9 Unmodified _VLLFFVLLG_ 0 0 0 PCDHB12|p.G325Efs*13|1|0.4|ENSG00000120328|chr5:141209877-141209877|G/-|frameshift_variant;ENSG00000120328|ENST00000239450|PCDHB12 PCDHB12|p.G325Efs*13|1|0.4|ENSG00000120328|chr5:141209877-141209877|G/-|frameshift_variant PCDHB12|p.G325Efs*13|1|0.4|ENSG00000120328|chr5:141209877-141209877|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.9054260253906 3 340.887923 1019.64194 NaN NaN NaN NaN NaN NaN NaN 9.3515 1 9.3515 8.8515 9.8515 0 0 0 0 0.23508 1 1072 1072 0 0 1 51132 3128 33941 33962 50062 50062 0.1329047039019997 VLLFLLFLLL 10 Unmodified _VLLFLLFLLL_ 0 0 0 ENSG00000180475|ENST00000316770|OR10Q1;OR10Q1|p.V189Sfs*19|1|0.41|ENSG00000180475|chr11:58228311-58228311|C/-|frameshift_variant ENSG00000180475|ENST00000316770|OR10Q1 ENSG00000180475|ENST00000316770|OR10Q1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2883911132812 2 602.409404 1202.80425 NaN NaN NaN NaN NaN NaN NaN 145.51 1 145.51 145.01 146.01 0 0 0 0 2.8426 1 29083 29083 0.13989 0 1 51133 6677 33942 33963 50063 50063 0.21096434072342163 VLLFLLFLLL 10 Unmodified _VLLFLLFLLL_ 0 0 0 ENSG00000180475|ENST00000316770|OR10Q1;OR10Q1|p.V189Sfs*19|1|0.41|ENSG00000180475|chr11:58228311-58228311|C/-|frameshift_variant ENSG00000180475|ENST00000316770|OR10Q1 ENSG00000180475|ENST00000316770|OR10Q1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.29541015625 2 602.409404 1202.80425 NaN NaN NaN NaN NaN NaN NaN 145.55 1 145.55 145.05 146.05 0 0 0 0 2.8426 1 29090 29090 0.13989 0 1 51134 6677 33942 33963 50064 50064 0.21096434072342163 VLLFLLKP 8 Unmodified _VLLFLLKP_ 0 0 0 REV__TRIOBP|p.Q326Kfs*553|1|0.36|ENSG00000100106|chr22:37723530-37723530|C/-|frameshift_variant REV__TRIOBP|p.Q326Kfs*553|1|0.36|ENSG00000100106|chr22:37723530-37723530|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.88275146484375 3 314.884402 941.631375 NaN NaN NaN NaN NaN NaN NaN 9.3909 1 8.5967 8.0967 9.0967 -0.79424 0 0 0 0.21486 1 1080 1080 0 0 1 + 51135 25484 33943 33964 50065 50065 0.15822487735761115 VLLGKKKKK 9 Unmodified _VLLGKKKKK_ 0 0 0 ENST00000464515.1_1_7:41729250-41730808:-|nuORF;ENSG00000122641|ENST00000242208|INHBA ENST00000464515.1_1_7:41729250-41730808:-|nuORF ENST00000464515.1_1_7:41729250-41730808:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.87774658203125 3 347.921738 1040.74339 NaN NaN NaN NaN NaN NaN NaN 9.6472 1 8.853 8.353 9.353 -0.79424 0 0 0 0.23508 1 1133 1133 0 0 1 51136 3236 33944 33965 50066 50066 0.2246434181274708 VLLHAHLA 8 Unmodified _VLLHAHLA_ 0 0 0 nc|ENSG00000079931|Q6UVY6-2|MOXD1;ENSG00000079931|ENST00000367963|MOXD1 nc|ENSG00000079931|Q6UVY6-2|MOXD1 nc|ENSG00000079931|Q6UVY6-2|MOXD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23095703125 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 14.599 1 13.485 12.985 13.985 -1.1142 0 0 0 0.2396 1 2199 2199 0.12286 0 1 51137 1602 33945 33966 50067 50067 0.08186116205172311 VLLHKLKEV 9 Unmodified _VLLHKLKEV_ 0 0 0 REV__ENST00000008527.9_1_12:107393829-107395143:-|nuORF REV__ENST00000008527.9_1_12:107393829-107395143:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015380859375 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 121.22 1 121.22 120.72 121.72 0 0 0 0 0.23508 1 23894 23894 1.0715 0 1 + 51138 19967 33946 33967 50068 50068 0.15527758679127146 VLLHKLKEV 9 Unmodified _VLLHKLKEV_ 0 0 0 REV__ENST00000008527.9_1_12:107393829-107395143:-|nuORF REV__ENST00000008527.9_1_12:107393829-107395143:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2125549316406 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 65.684 1 62.637 62.137 63.137 -3.047 0 0 0 0.19623 1 12716 12716 0.073264 0.069883 1 + 51139 19967 33946 33967 50069 50069 0.15527758679127146 VLLIHLTKKS 10 Unmodified _VLLIHLTKKS_ 0 0 0 ENST00000216554.7_1_14:103805174-103805581:+|nuORF ENST00000216554.7_1_14:103805174-103805581:+|nuORF ENST00000216554.7_1_14:103805174-103805581:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3276977539062 2 576.379166 1150.74378 NaN NaN NaN NaN NaN NaN NaN 150.93 1 146.19 145.69 146.69 -4.7371 0 0 0 2.8426 1 29978 29978 0.0013812 0 1 51140 8118 33947 33968 50070 50070 0.174437167419228 VLLIILKL 8 Unmodified _VLLIILKL_ 0 0 0 REV__tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1 REV__tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.95977783203125 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 20.722 1 19.338 18.838 19.838 -1.3847 0 0 0 0.21486 1 3226 3226 0 0 1 + 51141 24948 33948 33969 50071 50071 0.21343347286892822 VLLIILKL 8 Unmodified _VLLIILKL_ 0 0 0 REV__tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1 REV__tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.84613037109375 3 308.900052 923.678326 NaN NaN NaN NaN NaN NaN NaN 39.207 1 36.765 36.265 37.265 -2.4419 0 0 0 0.2396 1 6998 6998 0 0 1 + 51142 24948 33948 33969 50072 50072 0.21343347286892822 VLLKARLVPA 10 Unmodified _VLLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20196533203125 3 360.581493 1078.72265 -0.40063 -0.00014446 0.2904 0.00010471 -0.11023 -3.9746E-05 360.58156905570354 90.562 1.2055 90.562 90.082 91.288 0 107 33 5 0 0 0 0.77164 1 17755 17755 30.703 18.529 1 121230000 51143 4550 33949 33970 50073 50073 0.18643751433069156 VLLKARLVPA 10 Unmodified _VLLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2020263671875 3 360.581493 1078.72265 NaN NaN NaN NaN NaN NaN NaN 94.569 1 90.578 90.078 91.078 -3.9907 0 0 0 0.22588 1 18533 18533 9.544 4.647 1 51144 4550 33949 33970 50074 50074 0.18643751433069156 VLLKARLVPA 10 Unmodified _VLLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20098876953125 3 360.581493 1078.72265 -0.25025 -9.0237E-05 0.098111 3.5377E-05 -0.15214 -5.486E-05 360.5815326109024 93.976 1.0004 89.985 89.487 90.487 -3.9907 111 28 5 0 0 0 0.56995 1 18388 18388 40.725 24.576 1 123540000 51145 4550 33949 33970 50075 50075 0.18643751433069156 VLLKARLVPA 10 Unmodified _VLLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2687377929688 2 540.368601 1078.72265 0.29555 0.0001597 0.17418 9.4124E-05 0.46973 0.00025383 540.3686245632375 94.152 0.90154 90.009 89.55 90.451 -4.1435 81 25 4 0 0 0 0.10181 1 18012 18012 36.127 19.185 1 48157000 51146 4550 33949 33970 50076 50076 0.18643751433069156 VLLKARLVPA 10 Unmodified _VLLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2018127441406 3 360.581493 1078.72265 0.20097 7.2467E-05 -0.28757 -0.00010369 -0.086598 -3.1226E-05 360.5813604398885 94.15 1.0403 90.007 89.517 90.558 -4.1435 110 29 5 0 0 0 0.56995 1 17933 17933 40.725 28.55 1 142010000 51147 4550 33949 33970 50077 50077 0.18643751433069156 VLLKARLVPA 10 Unmodified _VLLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017517089844 3 360.581493 1078.72265 -0.6422 -0.00023157 0.55158 0.00019889 -0.09062 -3.2676E-05 360.58168359158606 93.947 1.3459 90.103 89.572 90.918 -3.844 134 38 5 0 0 0 0.45984 1 17980 17980 46.022 33.848 1 114790000 51148 4550 33949 33970 50078 50078 0.18643751433069156 VLLKARLVPA 10 Unmodified _VLLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.368601 1078.72265 0.20713 0.00011193 0.029357 1.5864E-05 0.23649 0.00012779 540.3685715495047 94.04 0.96861 90.049 89.553 90.522 -3.9907 -0.0064184 -9.9082E-05 NaN 36.127 83 27 4 NaN NaN NaN NaN 0 NaN NaN 0 36177000 51149 4550 33949 33970 0.18643751433069156 VLLKARLVPA 10 Unmodified _VLLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.368601 1078.72265 0.12455 6.7305E-05 0.19344 0.00010453 0.31799 0.00017183 540.3686450026039 93.953 1.103 90.109 89.642 90.745 -3.844 0.053431 7.8243E-05 NaN 36.127 87 31 4 NaN NaN NaN NaN 0 NaN NaN 0 35148000 51150 4550 33949 33970 0.18643751433069156 VLLKEPNVPD 10 Unmodified _VLLKEPNVPD_ 0 0 0 REV__ENSG00000106397|ENST00000223127|PLOD3 REV__ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21807861328125 3 375.216768 1122.62847 -1.9941 -0.00074824 3.0166 0.0011319 1.0224 0.00038364 375.2178918191765 17.461 0.16976 15.946 15.84 16.01 -1.5148 6 4 2 0 0 0 0.75212 1 2534 2534 5.0475 1.4548 1 109620 + 51151 15049 33950 33971 50079 50079 0.07206567820298915 VLLLFLGPV 9 Unmodified _VLLLFLGPV_ 0 0 0 REV__ENSG00000184986|ENST00000392519|TMEM121 REV__ENSG00000184986|ENST00000392519|TMEM121 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.13665771484375 3 324.21604 969.62629 NaN NaN NaN NaN NaN NaN NaN 59.426 1 56.112 55.612 56.612 -3.3139 0 0 0 0.1964 1 11051 11051 0.073264 0 1 + 51152 18927 33951 33972 50080 50080 0.14026183873124864 VLLLFLLLFL 10 Unmodified _VLLLFLLLFL_ 0 0 0 nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3;ENST00000391735.3_19:54722514-54745001:-|nuORF;nc|ENSG00000105609|O75023-2|LILRB5;nc|ENSG00000105609|O75023|LILRB5;ENSG00000105609|ENST00000449561|LILRB5 nc|ENSG00000204577|O75022|LILRB3 nc|ENSG00000204577|O75022|LILRB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2866821289062 2 602.409404 1202.80425 NaN NaN NaN NaN NaN NaN NaN 136.78 1 131.86 131.36 132.36 -4.9216 0 0 0 2.8426 1 26292 26292 0.13989 0 1 51153 7591 33952 33973 50081 50081 0.21096434072319425 VLLLGCLLFLR 11 Unmodified _VLLLGCLLFLR_ 0 0 0 B3GNT4|p.G150Afs*4|1|0.33|ENSG00000176383|chr12:122206697-122206697|G/-|frameshift_variant;nc|ENSG00000176383|Q9C0J1-2|B3GNT4;ENSG00000176383|ENST00000324189|B3GNT4 B3GNT4|p.G150Afs*4|1|0.33|ENSG00000176383|chr12:122206697-122206697|G/-|frameshift_variant B3GNT4|p.G150Afs*4|1|0.33|ENSG00000176383|chr12:122206697-122206697|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.77734375 2 630.399044 1258.78354 1.0221 0.00064436 2.8466 0.0017945 3.8687 0.0024388 630.90388716383 145.27 0.17094 140.6 140.48 140.65 -4.6694 6 4 2 0 0 0 0.96036 1 28776 28776 8.1555 5.1603 1 2045900 51154 290 33953 33974 50082 50082 0.16449520420997032 VLLLGLLLLK 10 Unmodified _VLLLGLLLLK_ 0 0 0 PNISR|p.E498Sfs*85|2|0.38|ENSG00000132424|chr6:99401467-99401467|T/-|frameshift_variant PNISR|p.E498Sfs*85|2|0.38|ENSG00000132424|chr6:99401467-99401467|T/-|frameshift_variant PNISR|p.E498Sfs*85|2|0.38|ENSG00000132424|chr6:99401467-99401467|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7859497070312 2 547.899203 1093.78385 0.32725 0.0001793 -4.1011 -0.002247 -3.7739 -0.0020677 548.3973498338722 130.25 0.14258 130.25 130.19 130.34 0 5 3 2 0 0 0 1.1347 1 25758 25758 0 0 1 1030300 51155 12806 33954 33975 50083 50083 0.240712634124975 VLLLGLLLLK 10 Unmodified _VLLLGLLLLK_ 0 0 0 PNISR|p.E498Sfs*85|2|0.38|ENSG00000132424|chr6:99401467-99401467|T/-|frameshift_variant PNISR|p.E498Sfs*85|2|0.38|ENSG00000132424|chr6:99401467-99401467|T/-|frameshift_variant PNISR|p.E498Sfs*85|2|0.38|ENSG00000132424|chr6:99401467-99401467|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7880249023438 2 547.899203 1093.78385 0.29278 0.00016042 -3.3803 -0.0018521 -3.0875 -0.0016916 547.8970443357753 135.15 0.14301 130.32 130.24 130.38 -4.8307 5 3 2 0 0 0 1.1347 1 26029 26029 0 0 1 1972000 51156 12806 33954 33975 50084 50084 0.240712634124975 VLLLLIPLTE 10 Unmodified _VLLLLIPLTE_ 0 0 0 REV__nc|ENSG00000163357|Q5T197-2|DCST1 REV__nc|ENSG00000163357|Q5T197-2|DCST1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2144470214844 3 375.249409 1122.7264 NaN NaN NaN NaN NaN NaN NaN 23.633 1 22.08 21.58 22.58 -1.5532 0 0 0 2.8426 1 4086 4086 0 0 1 + 51157 17563 33955 33976 50085 50085 0.16994376416255363 VLLLLLFFQP 10 Unmodified _VLLLLLFFQP_ 0 0 0 REV__ENST00000494815.1_1_11:864058-865677:+|nuORF REV__ENST00000494815.1_1_11:864058-865677:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3019409179688 2 601.88101 1201.74747 0.3759 0.00022625 1.3526 0.00081411 1.7285 0.0010404 601.880239885645 144.13 0.34879 139.19 139.1 139.45 -4.9445 10 9 2 0 0 0 0.91149 1 27840 27840 3.9444 2.1002 1 3317500 + 51158 22371 33956 33977 50086 50086 0.15466386515799968 VLLLLLLL 8 Unmodified _VLLLLLLL_ 0 0 0 nc|ENSG00000174348|Q7Z5L7-3|PODN;ENSG00000135077|ENST00000307851|HAVCR2;nc|ENSG00000100427|Q15049-2|MLC1;ENSG00000100427|ENST00000311597|MLC1;PODN|p.I380Sfs*55|1|0.26|ENSG00000174348|chr1:53078499-53078499|C/-|frameshift_variant;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000174348|Q7Z5L7-4|PODN;ENSG00000174348|ENST00000312553|PODN;nc|ENSG00000174348|Q7Z5L7-2|PODN;PODN|p.R543Vfs*77|1|0.42|ENSG00000174348|chr1:53078989-53078989|C/-|frameshift_variant;ENSG00000161921|ENST00000293778|CXCL16;HAVCR2|p.Y35Ifs*41|1|0.23|ENSG00000135077|chr5:157106919-157106919|G/-|frameshift_variant;HAVCR2|p.D92Efs*4|1|0.43|ENSG00000135077|chr5:157106745-157106745|A/-|frameshift_variant;CXCL16|p.Q72Rfs*46|1|0.77|ENSG00000161921|chr17:4738842-4738843|-/C|frameshift_variant;ENSG00000196196|ENST00000354323|HRCT1;SCUBE2|p.D115Wfs*7|1|0.04|ENSG00000175356|chr11:9079422-9079423|TC/-|frameshift_variant;ENST00000483836.1_1_22:50500014-50511179:-|nuORF;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;CXCL16|p.A149Hfs*26|1|0.09|ENSG00000161921|chr17:4735422-4735422|C/-|frameshift_variant;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;PODN|p.P303Rfs*7|3|0.25|ENSG00000174348|chr1:53077705-53077705|C/-|frameshift_variant;nc|ENSG00000175356|Q9NQ36-3|SCUBE2;SCUBE2|p.N754Kfs*2|1|0.22|ENSG00000175356|chr11:9029954-9029955|-/T|frameshift_variant;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2;ENST00000498707.5_1_3:64673464-64673620:-|nuORF;CON__ENSEMBL:ENSBTAP00000032840;ENSG00000114554|ENST00000393409|PLXNA1;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;PLXNA1|p.G417Afs*18|1|0.28|ENSG00000114554|chr3:126991434-126991434|G/-|frameshift_variant;PLXNA1|p.Q1019Rfs*22|3|0.36|ENSG00000114554|chr3:127016548-127016548|C/-|frameshift_variant;ENSG00000142552|ENST00000270645|RCN3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3;ENSG00000166557|ENST00000299705|TMED3;ENSG00000169962|ENST00000339381|TAS1R3;TAS1R3|p.L606Wfs*43|1|0.42|ENSG00000169962|chr1:1333711-1333711|G/-|frameshift_variant;ENST00000373874.6_1_20:35220081-35220303:+|nuORF REV__ENSG00000123384|ENST00000243077|LRP1;nc|ENSG00000175356|Q9NQ36-3|SCUBE2;ENST00000498707.5_1_3:64673464-64673620:-|nuORF;CON__ENSEMBL:ENSBTAP00000032840;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000142552|ENST00000270645|RCN3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3;ENSG00000169962|ENST00000339381|TAS1R3;ENST00000373874.6_1_20:35220081-35220303:+|nuORF;REV__CLMP|p.R298Afs*38|1|0.27|ENSG00000166250|chr11:123073705-123073705|T/-|frameshift_variant;REV__CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant;REV__IL21R|p.G360Afs*20|1|0.12|ENSG00000103522|chr16:27448740-27448740|G/-|frameshift_variant;REV__nc|ENSG00000124783|P43307-2|SSR1;REV__nc|ENSG00000142513|Q9BZG2-3|ACP4;REV__nc|ENSG00000143590|P52797-2|EFNA3 REV__ENSG00000123384|ENST00000243077|LRP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.01025390625 3 303.896419 908.667426 NaN NaN NaN NaN NaN NaN NaN 9.829 1 9.829 9.329 10.329 0 0 0 0 0.21486 1 1179 1179 0 0 1 + 51159 15726;14889;6404;10609;646;2798;4427;5732;6025;9209;13451;13608;15795;16673;16740 33957 33978 50087 50087 0.20943944912619372 VLLLLLLLH 9 Unmodified _VLLLLLLLH_ 0 0 0 REV__IL21R|p.G360Afs*20|1|0.12|ENSG00000103522|chr16:27448740-27448740|G/-|frameshift_variant REV__IL21R|p.G360Afs*20|1|0.12|ENSG00000103522|chr16:27448740-27448740|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6989135742188 2 523.870446 1045.72634 0.18363 9.62E-05 1.48 0.00077534 1.6637 0.00087154 524.3747411638337 140.55 0.14006 140.55 140.47 140.61 0 5 3 2 0 0 0 0.87788 1 27976 27976 2.3027 1.7012 1 2302300 + 51160 14889 33958 33979 50088 50088 0.20530421206944993 VLLLLLLLH 9 Unmodified _VLLLLLLLH_ 0 0 0 REV__IL21R|p.G360Afs*20|1|0.12|ENSG00000103522|chr16:27448740-27448740|G/-|frameshift_variant REV__IL21R|p.G360Afs*20|1|0.12|ENSG00000103522|chr16:27448740-27448740|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.687255859375 2 523.870446 1045.72634 NaN NaN NaN NaN NaN NaN NaN 156.61 1 151.34 150.84 151.84 -5.2712 0 0 0 0.23508 1 30374 30374 0.6015 0 1 + 51161 14889 33958 33979 50089 50089 0.20530421206944993 VLLLLLLLLLL 11 Unmodified _VLLLLLLLLLL_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;PLXNA1|p.G417Afs*18|1|0.28|ENSG00000114554|chr3:126991434-126991434|G/-|frameshift_variant;PLXNA1|p.Q1019Rfs*22|3|0.36|ENSG00000114554|chr3:127016548-127016548|C/-|frameshift_variant ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 417.0341491699219 3 416.980483 1247.91962 NaN NaN NaN NaN NaN NaN NaN 12.554 1 11.424 10.924 11.924 -1.1293 0 0 0 0.23698 1 1547 1547 0 0 1 51162 2798 33959 33980 50090 50090 0.30557538203333934 VLLLLLLLRH 10 Unmodified _VLLLLLLLRH_ 0 0 0 ENSG00000142552|ENST00000270645|RCN3 ENSG00000142552|ENST00000270645|RCN3 ENSG00000142552|ENST00000270645|RCN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2989501953125 2 601.921001 1201.82745 0.43779 0.00026352 -1.9523 -0.0011752 -1.5145 -0.00091164 602.4227868387286 141.81 0.16931 136.83 136.7 136.87 -4.9877 6 4 2 0 0 0 0.91149 1 27290 27290 0 0 1 2781900 51163 4427 33960 33981 50091 50091 0.23460872909640784 VLLLLLLLRL 10 Unmodified _VLLLLLLLRL_ 0 0 0 ENST00000498707.5_1_3:64673464-64673620:-|nuORF ENST00000498707.5_1_3:64673464-64673620:-|nuORF ENST00000498707.5_1_3:64673464-64673620:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2734375 2 589.933577 1177.8526 NaN NaN NaN NaN NaN NaN NaN 171.06 1 166.18 165.68 166.68 -4.873 0 0 0 0.22588 1 33885 33885 0.45834 0 1 51164 10609 33961 33982 50092 50092 0.27078927712227596 VLLLLLLQP 9 Unmodified _VLLLLLLQP_ 0 0 0 ENSG00000277150|ENST00000622749|F8A3 ENSG00000277150|ENST00000622749|F8A3 ENSG00000277150|ENST00000622749|F8A3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 511.35577392578125 2 511.354628 1020.6947 NaN NaN NaN NaN NaN NaN NaN 165.33 1 165.33 164.83 165.83 0 0 0 0 0.23508 1 33541 33541 2.0598 0.21551 1 51165 8033 33962 33983 50093 50093 0.1851842845298961 VLLLLRPLE 9 Unmodified _VLLLLRPLE_ 0 0 0 REV__nc|ENSG00000196352|P08174-4|CD55 REV__nc|ENSG00000196352|P08174-4|CD55 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.278076171875 2 533.35516 1064.69577 NaN NaN NaN NaN NaN NaN NaN 162.86 1 157.67 157.17 158.17 -5.1878 0 0 0 0.19634 1 31645 31645 0.0033805 0 1 + 51166 19237 33963 33984 50094 50094 0.16600642821890688 VLLLLVRKK 9 Unmodified _VLLLLVRKK_ 0 0 0 ENST00000567674.1_1_16:68721613-68732300:+|nuORF;nc|ENSG00000062038|P22223-2|CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3 ENST00000567674.1_1_16:68721613-68732300:+|nuORF ENST00000567674.1_1_16:68721613-68732300:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2642211914062 2 541.394619 1080.77469 NaN NaN NaN NaN NaN NaN NaN 164.6 1 164.6 164.1 165.1 0 0 0 0 0.19632 1 33301 33301 0.073264 0 1 51167 1322 33964 33985 50095 50095 0.23752914846841122 VLLLRLALF 9 Unmodified _VLLLRLALF_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 353.2361755371094 3 353.242589 1056.70594 NaN NaN NaN NaN NaN NaN NaN 6.632 1 5.6172 5.1172 6.1172 -1.0148 0 0 0 0.23508 1 447 447 0 0 1 51168 6808 33965 33986 50096 50096 0.17985250547098985 VLLLRLWRG 9 Unmodified _VLLLRLWRG_ 0 0 0 REV__AFAP1L1|p.G505R|1|0.31|ENSG00000157510|chr5:149319615-149319615|G/A|missense_variant REV__AFAP1L1|p.G505R|1|0.31|ENSG00000157510|chr5:149319615-149319615|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.9366455078125 3 375.913354 1124.71823 NaN NaN NaN NaN NaN NaN NaN 9.7445 1 8.9502 8.4502 9.4502 -0.79424 0 0 0 0.23508 1 1155 1155 0 0 1 + 51169 12973 33966 33987 50097 50097 0.16086287010148226 VLLLVQALPQ 10 Unmodified _VLLLVQALPQ_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.779541015625 2 547.352617 1092.69068 0.47047 0.00025751 3.5832 0.0019613 4.0537 0.0022188 547.8556128741958 154.69 0.36034 149.44 149.29 149.65 -5.2526 12 9 2 0 0 0 0.91149 1 29993 29993 1.4819 0 1 1009500 51170 4444 33967 33988 50098 50098 0.14804338959265806 VLLLYLKRL 9 Unmodified _VLLLYLKRL_ 0 0 0 ENSG00000131724|ENST00000371666|IL13RA1 ENSG00000131724|ENST00000371666|IL13RA1 ENSG00000131724|ENST00000371666|IL13RA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 565.6776123046875 2 565.886627 1129.7587 NaN NaN NaN NaN NaN NaN NaN 172.59 1 167.69 167.19 168.19 -4.8977 0 0 0 0.19624 1 34236 34236 0 0 1 51171 3690 33968 33989 50099 50099 0.19901208609940113 VLLLYTAFPS 10 Unmodified _VLLLYTAFPS_ 0 0 0 REV__ENST00000261205.8_1_12:79747294-79747342:+|nuORF REV__ENST00000261205.8_1_12:79747294-79747342:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2179870605469 3 375.218109 1122.6325 -0.0005081 -1.9065E-07 -0.78719 -0.00029537 -0.7877 -0.00029556 375.2177034156855 24.149 0.52024 22.615 22.434 22.955 -1.5342 32 14 3 0 0 0 0.64697 1 3917 3917 16.566 1.6087 1 2740600 + 51172 20169 33969 33990 50100 50100 0.07608657313994627 VLLMHENQVQV 11 Unmodified _VLLMHENQVQV_ 0 0 0 REV__ENST00000224140.5_1_9:135224768-135229071:-|nuORF REV__ENST00000224140.5_1_9:135224768-135229071:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2281799316406 3 437.235945 1308.68601 NaN NaN NaN NaN NaN NaN NaN 66.902 1 63.576 63.076 64.076 -3.3268 0 0 0 0.22632 1 12605 12605 3.0723 2.8069 1 + 51173 20041 33970 33991 50101 50101 0.0440108675418287 VLLMHENQVQV 11 Unmodified _VLLMHENQVQV_ 0 0 0 REV__ENST00000224140.5_1_9:135224768-135229071:-|nuORF REV__ENST00000224140.5_1_9:135224768-135229071:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2279357910156 3 437.235945 1308.68601 NaN NaN NaN NaN NaN NaN NaN 67.779 1 64.453 63.953 64.953 -3.3268 0 0 0 0.22632 1 12785 12785 1.4551 1.3913 1 + 51174 20041 33970 33991 50102 50102 0.0440108675418287 VLLNLLVRVL 10 Unmodified _VLLNLLVRVL_ 0 0 0 REV__nc|ENSG00000167608|Q7Z404-1|TMC4 REV__nc|ENSG00000167608|Q7Z404-1|TMC4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3287353515625 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 90.355 1 86.496 85.996 86.996 -3.8595 0 0 0 2.8426 1 17677 17677 0.0013812 0 1 + 51175 17943 33971 33992 50103 50103 0.21080593638657774 VLLPRCKK 8 Unmodified _VLLPRCKK_ 0 0 0 ENST00000493115.1_1_20:30451708-30457369:-|nuORF ENST00000493115.1_1_20:30451708-30457369:-|nuORF ENST00000493115.1_1_20:30451708-30457369:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7369689941406 2 478.807322 955.600092 0.28337 0.00013568 1.108 0.00053053 1.3914 0.00066621 478.8078784581551 86.776 0.44604 82.825 82.65 83.096 -3.9503 18 12 2 0 0 0 0.89276 1 16550 16550 0.12286 0.11459 1 964250 51176 10541 33972 33993 50104 50104 0.12051591430008557 VLLPRCKK 8 Unmodified _VLLPRCKK_ 0 0 0 ENST00000493115.1_1_20:30451708-30457369:-|nuORF ENST00000493115.1_1_20:30451708-30457369:-|nuORF ENST00000493115.1_1_20:30451708-30457369:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7361755371094 2 478.807322 955.600092 0.093493 4.4765E-05 1.3037 0.00062424 1.3972 0.00066901 478.80790034300287 86.57 0.56862 82.842 82.625 83.193 -3.7289 22 15 2 0 0 0 0.89276 1 16572 16572 0.12286 0 1 1155500 51177 10541 33972 33993 50105 50105 0.12051591430008557 VLLPRCKK 8 Unmodified _VLLPRCKK_ 0 0 0 ENST00000493115.1_1_20:30451708-30457369:-|nuORF ENST00000493115.1_1_20:30451708-30457369:-|nuORF ENST00000493115.1_1_20:30451708-30457369:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.807322 955.600092 -0.049741 -2.3816E-05 1.692 0.00081015 1.6423 0.00078633 478.80805936514275 86.698 0.52984 82.971 82.619 83.149 -3.727 0.091689 0.0003321 NaN 0.12286 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1575300 51178 10541 33972 33993 0.12051591430008557 VLLPVILLP 9 Unmodified _VLLPVILLP_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 326.22357177734375 3 326.23169 975.67324 NaN NaN NaN NaN NaN NaN NaN 88.251 1 84.458 83.958 84.958 -3.7926 0 0 0 0.23508 1 17261 17261 2.9952 0 1 51179 1085 33973 33994 50106 50106 0.18443043424292682 VLLPVILLP 9 Unmodified _VLLPVILLP_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 326.25341796875 3 326.23169 975.67324 NaN NaN NaN NaN NaN NaN NaN 132.13 1 127.49 126.99 127.99 -4.6399 0 0 0 0.23508 1 26044 26044 0.26902 0 1 51180 1085 33973 33994 50107 50107 0.18443043424292682 VLLQPKLK 8 Unmodified _VLLQPKLK_ 0 0 0 ENSG00000100647|ENST00000342745|SUSD6 ENSG00000100647|ENST00000342745|SUSD6 ENSG00000100647|ENST00000342745|SUSD6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 469.82421875 2 469.823495 937.632438 NaN NaN NaN NaN NaN NaN NaN 8.4134 1 7.7343 7.2343 8.2343 -0.67913 0 0 0 0.2396 1 871 871 0.30703 0 1 51181 2001 33974 33995 50108 50108 0.16112702104658183 VLLRLIKQI 9 Unmodified _VLLRLIKQI_ 0 0 0 REV__WIPI2|p.P343L|1|0.22|ENSG00000157954|chr7:5228118-5228118|C/T|missense_variant REV__WIPI2|p.P343L|1|0.22|ENSG00000157954|chr7:5228118-5228118|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7850341796875 2 548.384251 1094.75395 0.37452 0.00020538 0.90322 0.00049531 1.2777 0.0007007 548.3836416136417 144.4 0.20468 139.46 139.34 139.55 -4.9445 6 5 2 0 0 0 0.60888 1 27892 27892 0.12781 0 1 1647400 + 51182 25543 33975 33996 50109 50109 0.21036324467172562 VLLRLLRRL 9 Unmodified _VLLRLLRRL_ 0 0 0 REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3269653320312 2 576.408592 1150.80263 NaN NaN NaN NaN NaN NaN NaN 139.61 1 139.61 139.11 140.11 0 0 0 0 0.23508 1 27758 27758 0.6015 0 1 + 51183 13873 33976 33997 50110 50110 0.23326237826950091 VLLRSEYTN 9 Unmodified _VLLRSEYTN_ 0 0 0 REV__PTCHD1|p.H481R|1|0.12|ENSG00000165186|chrX:23392960-23392960|A/G|missense_variant REV__PTCHD1|p.H481R|1|0.12|ENSG00000165186|chrX:23392960-23392960|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7930297851562 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 144.06 1 139.39 138.89 139.89 -4.6694 0 0 0 0.22621 1 28511 28511 15.847 1.0089 1 + 51184 24525 33977 33998 50111 50111 0.03372824126381602 VLLRYLHN 8 Unmodified _VLLRYLHN_ 0 0 0 nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7;ENST00000513980.5_1_17:47892935-47904861:+|nuORF;ENST00000512616.5_1_17:47892935-47904861:+|nuORF;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7;nc|ENSG00000136504|O95251-2|KAT7;ENST00000513075.1_1_17:47900608-47903534:+|nuORF;ENST00000503635.1_1_17:47903366-47904308:+|nuORF nc|ENSG00000136504|O95251-4|KAT7 nc|ENSG00000136504|O95251-4|KAT7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 513.8073120117188 2 514.306001 1026.59745 0.42275 0.00021742 -1.3742 -0.00070676 -0.95146 -0.00048934 514.3052278025759 159.87 1.0954 154.62 154 155.1 -5.2526 46 30 2 0 0 0 0.88445 1 30910 30910 1.7423 0 1 1084700 51185 4016 33978 33999 50112 50112 0.0852145929670769 VLLSQPTVV 9 Unmodified _VLLSQPTVV_ 0 0 0 ENSG00000118217|ENST00000367942|ATF6;ATF6|p.N316Ifs*17|1|0.21|ENSG00000118217|chr1:161819665-161819665|A/-|frameshift_variant ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.74139404296875 2 478.294768 954.574983 0.26426 0.0001264 -2.0974 -0.0010032 -1.8331 -0.00087678 478.29447406796095 124.07 0.5355 119.47 119.2 119.73 -4.5926 26 14 2 0 0 0 0.38188 1 23885 23885 26.884 0 1 814530 51186 3021 33979 34000 50113 50113 0.09587815108432096 VLLSQPTVV 9 Unmodified _VLLSQPTVV_ 0 0 0 ENSG00000118217|ENST00000367942|ATF6;ATF6|p.N316Ifs*17|1|0.21|ENSG00000118217|chr1:161819665-161819665|A/-|frameshift_variant ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.294768 954.574983 0.17655 8.4445E-05 -2.1525 -0.0010295 -1.9759 -0.00094508 478.29447126990027 123.91 0.59818 119.33 119.1 119.7 -4.5757 -0.074527 0.00021612 NaN 26.884 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1014700 51187 3021 33979 34000 0.09587815108432096 VLLTFGFG 8 Unmodified _VLLTFGFG_ 0 0 0 ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;TMTC4|p.N491Tfs*19|1|0.36|ENSG00000125247|chr13:100626128-100626128|T/-|frameshift_variant;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4 ENST00000478272.1_1_13:101287253-101288829:-|nuORF ENST00000478272.1_1_13:101287253-101288829:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.1400146484375 2 427.244547 852.47454 NaN NaN NaN NaN NaN NaN NaN 122.71 1 117.98 117.48 118.48 -4.731 0 0 0 0.21486 1 23570 23570 5.7604 0 1 51188 3345 33980 34001 50114 50114 0.04240202845426211 VLLVIFISY 9 Unmodified _VLLVIFISY_ 0 0 0 ENSG00000172365|ENST00000641342|OR5B2 ENSG00000172365|ENST00000641342|OR5B2 ENSG00000172365|ENST00000641342|OR5B2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2677612304688 2 533.830986 1065.64742 0.29146 0.00015559 1.5246 0.00081386 1.816 0.00096945 533.83185540703 75.519 0.50742 75.519 75.276 75.783 0 18 14 2 0 0 0 0.60888 1 14708 14708 0.073264 0 1 1876800 51189 6213 33981 34002 50115 50115 0.11722149182014618 VLLVKRIHL 9 Unmodified _VLLVKRIHL_ 0 0 0 REV__SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant REV__SRGAP2|p.H824Sfs*29|1|0.13|ENSG00000266028|chr1:206454983-206454984|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 545.877197265625 2 545.876594 1089.73863 NaN NaN NaN NaN NaN NaN NaN 177.04 1 172.13 171.63 172.63 -4.9008 0 0 0 0.19624 1 35303 35303 0.073264 0 1 + 51190 19900 33982 34003 50116 50116 0.19735457670003598 VLLVLKLGKL 10 Unmodified _VLLVLKLGKL_ 0 0 0 REV__ENSG00000177558|ENST00000324675|FAM187B REV__ENSG00000177558|ENST00000324675|FAM187B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.933837890625 3 365.933644 1094.7791 NaN NaN NaN NaN NaN NaN NaN 10.854 1 10.854 10.354 11.354 0 0 0 0 0.22588 1 1389 1389 0 0 1 + 51191 18564 33983 34004 50117 50117 0.2355037926975001 VLLWVIKV 8 Unmodified _VLLWVIKV_ 0 0 0 ENST00000465487.5_1_3:27418257-27433320:-|nuORF;nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;SLC4A7|p.S1176Kfs*13|1|0.68|ENSG00000033867|chr3:27383191-27383192|-/C|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7 ENST00000465487.5_1_3:27418257-27433320:-|nuORF ENST00000465487.5_1_3:27418257-27433320:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 969.4205932617188 1 969.649551 968.642274 0.24661 0.00023912 1.0629 0.0010307 1.3095 0.0012698 969.653842487761 167.81 0.52542 163.02 162.66 163.18 -4.7898 27 14 3 0 0 0 0.90013 1 33917 33917 0.30703 0 1 137360000 51192 1164 33984 34005 50118 50118 0.1566989011004125 VLLYAKLFL 9 Unmodified _VLLYAKLFL_ 0 0 0 REV__ENST00000547135.5_1_12:49231823-49239549:-|nuORF REV__ENST00000547135.5_1_12:49231823-49239549:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 540.3103637695312 2 540.346803 1078.67905 NaN NaN NaN NaN NaN NaN NaN 166 1 161.05 160.55 161.55 -4.9484 0 0 0 0.23048 1 32484 32484 14.582 2.0501 1 + 51193 22902 33985 34006 50119 50119 0.14286141935940577 VLMDGSVKL 9 Unmodified _VLMDGSVKL_ 0 0 0 nc|ENSG00000104814|Q92918|MAP4K1;ENSG00000104814|ENST00000396857|MAP4K1;ENST00000588938.1_1_19:39086232-39087718:-|nuORF nc|ENSG00000104814|Q92918|MAP4K1 nc|ENSG00000104814|Q92918|MAP4K1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2325134277344 2 481.272978 960.531403 0.46399 0.00022331 -0.52124 -0.00025086 -0.057253 -2.7554E-05 481.2726484048956 114.83 0.17436 110.52 110.41 110.59 -4.3135 6 4 2 0 0 0 0.41266 1 22108 22108 24.991 5.552 1 593870 51194 2257 33986 34007 50120 50120 0.04955882339629625 VLMHLMNC 8 Unmodified _VLMHLMNC_ 0 0 0 REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2315368652344 2 480.726826 959.4391 -0.0052966 -2.5462E-06 3.4519 0.0016594 3.4466 0.0016569 480.7273737293057 179.39 0.72513 179.39 179.22 179.95 0 30 20 2 0 0 0 1.028 1 37268 37268 0.79363 0.10326 1 86531 + 51195 18410 33987 34008 50121 50121 -0.0422424226989051 VLMLIVKSK 9 Unmodified _VLMLIVKSK_ 0 0 0 nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.2281188964844 3 344.227951 1029.66202 NaN NaN NaN NaN NaN NaN NaN 57.421 1 57.421 56.921 57.921 0 0 0 0 0.23508 1 10977 10977 0.26902 0 1 51196 4224 33988 34009 50122 50122 0.1483789805847664 VLMLIVKSK 9 Unmodified _VLMLIVKSK_ 0 0 0 nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.2276916503906 3 344.227951 1029.66202 NaN NaN NaN NaN NaN NaN NaN 57.653 1 57.653 57.153 58.153 0 0 0 0 0.23508 1 11026 11026 0.26902 0 1 51197 4224 33988 34009 50123 50123 0.1483789805847664 VLMLIVKSK 9 Unmodified _VLMLIVKSK_ 0 0 0 nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.22784423828125 3 344.227951 1029.66202 NaN NaN NaN NaN NaN NaN NaN 77.613 1 77.613 77.113 78.113 0 0 0 0 0.23508 1 15092 15092 0.26902 0 1 51198 4224 33988 34009 50124 50124 0.1483789805847664 VLMLSWKPL 9 Unmodified _VLMLSWKPL_ 0 0 0 nc|ENSG00000074603|Q6V1X1-6|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-2|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8 nc|ENSG00000074603|Q6V1X1-6|DPP8 nc|ENSG00000074603|Q6V1X1-6|DPP8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7852783203125 2 543.822638 1085.63072 NaN NaN NaN NaN NaN NaN NaN 140.55 1 140.55 140.05 141.05 0 0 0 0 0.23508 1 27986 27986 11.64 0 1 51199 1499 33989 34010 50125 50125 0.09133325024390615 VLMTEDIKL 9 Unmodified _VLMTEDIKL_ 0 0 0 nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2801513671875 2 531.299193 1060.58383 0.36765 0.00019533 -0.28243 -0.00015006 0.085212 4.5273E-05 531.2990708005107 142.17 0.88388 137.14 136.7 137.58 -5.0261 68 25 5 0 0 0 0.6329 1 27410 27410 10.824 2.9138 1 24584000 51200 2815 33990 34011 50126 50126 0.05596420682581993 VLMTEDIKL 9 Unmodified _VLMTEDIKL_ 0 0 0 nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 531.299193 1060.58383 0.080744 4.2899E-05 -0.039796 -2.1144E-05 0.040948 2.1756E-05 531.2991861236267 141.65 1.2908 137 136.54 137.83 -4.6493 -0.09266 0.00017823 NaN 10.824 76 36 3 NaN NaN NaN NaN 0 NaN NaN 0 27086000 51201 2815 33990 34011 0.05596420682581993 VLMTEDIKL 9 Unmodified _VLMTEDIKL_ 0 0 0 nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 531.299193 1060.58383 0.36765 0.00019533 -0.28243 -0.00015006 0.085212 4.5273E-05 531.2990708005107 142.17 0.88388 137.14 136.7 137.58 -5.0261 0.049466 -7.9596E-05 NaN 10.824 68 25 5 NaN NaN NaN NaN 0 NaN NaN 0 24584000 51202 2815 33990 34011 0.05596420682581993 VLMTEDIKL 9 Unmodified _VLMTEDIKL_ 0 0 0 nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 nc|ENSG00000114867|Q04637-4|EIF4G1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 531.299193 1060.58383 0.33051 0.0001756 -0.27233 -0.00014469 0.058182 3.0912E-05 531.2991245140774 142.01 0.84258 137.14 136.71 137.55 -4.8677 0.043193 -6.8862E-05 NaN 10.824 60 23 3 NaN NaN NaN NaN 0 NaN NaN 0 16850000 51203 2815 33990 34011 0.05596420682581993 VLMVAGMVVF 10 Unmodified _VLMVAGMVVF_ 0 0 0 ENST00000542411.5_1_11:61123996-61125228:-|nuORF;ENST00000538263.5_1_11:61123519-61125228:-|nuORF;ENST00000536687.1_1_11:61123996-61129264:-|nuORF;ENST00000535177.1_1_11:61121022-61124194:-|nuORF;ENSG00000162144|ENST00000294072|CYB561A3;nc|ENSG00000162144|Q8NBI2-2|CYB561A3 ENST00000542411.5_1_11:61123996-61125228:-|nuORF ENST00000542411.5_1_11:61123996-61125228:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2720947265625 2 533.295399 1064.57624 -0.11427 -6.0938E-05 -0.43032 -0.00022949 -0.54458 -0.00029042 533.2951937500773 94.765 0.48595 94.765 94.522 95.008 0 22 13 2 0 0 0 0.39482 1 18552 18552 3.5927 1.6652 1 1668200 51204 5316 33991 34012 50127 50127 0.04653989881308007 VLMYFNRT 8 Unmodified _VLMYFNRT_ 0 0 0 ENST00000563423.2_1_15:37109670-37110018:-|nuORF;nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1 ENST00000563423.2_1_15:37109670-37110018:-|nuORF ENST00000563423.2_1_15:37109670-37110018:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.271728515625 2 522.27077 1042.52699 NaN NaN NaN NaN NaN NaN NaN 158.84 1 153.57 153.07 154.07 -5.2712 0 0 0 0.2343 1 30820 30820 0.62683 0.37535 1 51205 2758 33992 34013 50128 50128 0.007424179167173861 VLMYHRVI 8 Unmodified _VLMYHRVI_ 0 0 0 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 344.2009582519531 3 344.200395 1029.57936 NaN NaN NaN NaN NaN NaN NaN 79.681 1 76.005 75.505 76.505 -3.676 0 0 0 0.21486 1 15185 15185 7.9102 0 1 51206 26050 33993 34014 50129 50129 0.06575001050327955 VLNATYISLQG 11 Unmodified _VLNATYISLQG_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2536010742188 2 589.824421 1177.63429 0.48371 0.0002853 -0.15024 -8.8612E-05 0.33347 0.00019669 589.8242892995153 139.99 0.8058 135.35 134.93 135.73 -4.6439 58 22 3 0 0 0 0.56992 1 27707 27707 19.626 2.1833 1 11439000 51207 7627 33994 34015 50130 50130 0.05257666331931432 VLNFLIYNQ 9 Unmodified _VLNFLIYNQ_ 0 0 0 GABRE|p.A359V|1|0.14|ENSG00000102287|chrX:151955429-151955429|G/A|missense_variant;ENST00000489333.1_1_X:151123836-151124249:-|nuORF;ENST00000486255.1_1_X:151123175-151124345:-|nuORF;ENSG00000102287|ENST00000370328|GABRE GABRE|p.A359V|1|0.14|ENSG00000102287|chrX:151955429-151955429|G/A|missense_variant GABRE|p.A359V|1|0.14|ENSG00000102287|chrX:151955429-151955429|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21014404296875 3 375.209725 1122.60735 NaN NaN NaN NaN NaN NaN NaN 14.016 1 12.902 12.402 13.402 -1.1142 0 0 0 0.23508 1 2072 2072 1.1933 0.12188 1 51208 2122 33995 34016 50131 50131 0.05094602511417179 VLNKLKHK 8 Unmodified _VLNKLKHK_ 0 0 0 REV__ENST00000495197.1_1_10:38368986-38369799:-|nuORF REV__ENST00000495197.1_1_10:38368986-38369799:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26690673828125 2 490.324194 978.633835 NaN NaN NaN NaN NaN NaN NaN 88.187 1 84.394 83.894 84.894 -3.7926 0 0 0 0.2396 1 17247 17247 0.0082765 0 1 + 51209 22376 33996 34017 50132 50132 0.1436633619340455 VLNSDQKVY 9 Unmodified _VLNSDQKVY_ 0 0 0 REV__nc|ENSG00000188107|Q5T1H1|EYS REV__nc|ENSG00000188107|Q5T1H1|EYS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2672119140625 2 533.282389 1064.55022 0.30844 0.00016448 -0.78717 -0.00041979 -0.47874 -0.0002553 533.2820414938337 75.941 0.55608 75.941 75.611 76.167 0 29 15 3 0 0 0 0.2213 1 14764 14764 7.4771 3.8844 1 3608900 + 51210 24215 33997 34018 50133 50133 0.020531352350417365 VLNTKILKK 9 Unmodified _VLNTKILKK_ 0 0 0 ENST00000368346.7_1_1:155305486-155305633:-|nuORF ENST00000368346.7_1_1:155305486-155305633:-|nuORF ENST00000368346.7_1_1:155305486-155305633:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 352.5297546386719 3 352.909498 1055.70667 -0.39164 -0.00013821 0.51411 0.00018144 0.12247 4.3222E-05 352.90970477326863 15 0.3857 15 14.842 15.227 0 12 7 2 0 0 0 0.65485 1 2234 2234 0 0 1 5602600 51211 9095 33998 34019 50134 50134 0.1810404519619624 VLNTKILKK 9 Unmodified _VLNTKILKK_ 0 0 0 ENST00000368346.7_1_1:155305486-155305633:-|nuORF ENST00000368346.7_1_1:155305486-155305633:-|nuORF ENST00000368346.7_1_1:155305486-155305633:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 352.909498 1055.70667 -0.72213 -0.00025485 0.36112 0.00012744 -0.36101 -0.0001274 352.9096610161102 16.138 0.73248 14.922 14.762 15.495 -1.2159 -0.041976 -2.4207E-05 NaN 0 30 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6813900 51212 9095 33998 34019 0.1810404519619624 VLNTKILKK 9 Unmodified _VLNTKILKK_ 0 0 0 ENST00000368346.7_1_1:155305486-155305633:-|nuORF ENST00000368346.7_1_1:155305486-155305633:-|nuORF ENST00000368346.7_1_1:155305486-155305633:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 352.909498 1055.70667 -0.52156 -0.00018407 0.32916 0.00011616 -0.1924 -6.7901E-05 352.9096547842552 16.193 0.62498 14.971 14.537 15.162 -1.2219 0.006278 -5.8042E-05 NaN 0 34 17 4 NaN NaN NaN NaN 0 NaN NaN 0 6566900 51213 9095 33998 34019 0.1810404519619624 VLNYVLGY 8 Unmodified _VLNYVLGY_ 0 0 0 REV__ENST00000512003.7_1_5:109760554-109954135:-|nuORF REV__ENST00000512003.7_1_5:109760554-109954135:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1444091796875 3 314.176133 939.506569 NaN NaN NaN NaN NaN NaN NaN 99.07 1 95.113 94.613 95.613 -3.9564 0 0 0 0.21486 1 19018 19018 1.8442 0 1 + 51214 19067 33999 34020 50135 50135 0.03439570528564673 VLNYVLGY 8 Unmodified _VLNYVLGY_ 0 0 0 REV__ENST00000512003.7_1_5:109760554-109954135:-|nuORF REV__ENST00000512003.7_1_5:109760554-109954135:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.1505432128906 3 314.176133 939.506569 NaN NaN NaN NaN NaN NaN NaN 99.156 1 95.199 94.699 95.699 -3.9564 0 0 0 0.21486 1 19036 19036 1.8442 0 1 + 51215 19067 33999 34020 50136 50136 0.03439570528564673 VLPDDLSGV 9 Unmodified _VLPDDLSGV_ 0 0 0 nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2 nc|ENSG00000114353|P04899-6|GNAI2 nc|ENSG00000114353|P04899-6|GNAI2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2293701171875 2 457.745108 913.475663 0.43045 0.00019704 -0.20255 -9.2716E-05 0.2279 0.00010432 457.74495620288366 118.13 1.1421 113.72 112.96 114.1 -4.4088 55 31 2 0 0 0 0.26282 1 22732 22732 10.899 0 1 1818400 51216 2785 34000 34021 50137 50137 0.015463724236838061 VLPELIGTR 9 Unmodified _VLPELIGTR_ 0 0 0 ENSG00000174327|ENST00000308027|SLC16A13 ENSG00000174327|ENST00000308027|SLC16A13 ENSG00000174327|ENST00000308027|SLC16A13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.2065124511719 3 333.206203 996.596781 NaN NaN NaN NaN NaN NaN NaN 120.69 1 116.17 115.67 116.67 -4.5221 0 0 0 0.23508 1 23795 23795 2.4985 0 1 51217 6342 34001 34022 50138 50138 0.0983461985700842 VLPFGRLN 8 Unmodified _VLPFGRLN_ 0 0 0 ENST00000467237.5_1_7:150774601-150776190:-|nuORF;nc|ENSG00000164896|Q14296-2|FASTK;FASTK|p.L409Cfs*14|1|0.28|ENSG00000164896|chr7:151077377-151077377|C/-|frameshift_variant;ENST00000482806.5_1_7:150774217-150777853:-|nuORF;nc|ENSG00000164896|Q14296-4|FASTK;nc|ENSG00000164896|Q14296-3|FASTK;ENSG00000164896|ENST00000297532|FASTK;ENST00000478477.1_1_7:150774852-150776634:-|nuORF;ENST00000466855.1_1_7:150774852-150776190:-|nuORF;ENST00000460980.5_1_7:150774852-150777853:-|nuORF ENST00000467237.5_1_7:150774601-150776190:-|nuORF ENST00000467237.5_1_7:150774601-150776190:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2374267578125 2 458.27417 914.533787 NaN NaN NaN NaN NaN NaN NaN 114 1 109.69 109.19 110.19 -4.3136 0 0 0 0.23749 1 21956 21956 0.12286 0 1 51218 5573 34002 34023 50139 50139 0.07310098859613845 VLPHLMLV 8 Unmodified _VLPHLMLV_ 0 0 0 SOS2|p.R339H|1|0.33|ENSG00000100485|chr14:50174506-50174506|C/T|missense_variant SOS2|p.R339H|1|0.33|ENSG00000100485|chr14:50174506-50174506|C/T|missense_variant SOS2|p.R339H|1|0.33|ENSG00000100485|chr14:50174506-50174506|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5389099121094 2 461.283149 920.551745 NaN NaN NaN NaN NaN NaN NaN 96.36 1 92.441 91.941 92.941 -3.9194 0 0 0 0.23899 1 18491 18491 1.3295 0 1 51219 25710 34003 34024 50140 50140 0.08829097790112428 VLPINLIF 8 Unmodified _VLPINLIF_ 0 0 0 ENST00000338402.6_1_16:20250446-20250542:-|nuORF ENST00000338402.6_1_16:20250446-20250542:-|nuORF ENST00000338402.6_1_16:20250446-20250542:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16412353515625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 133.66 1 133.66 133.16 134.16 0 0 0 0 0.2386 1 26444 26444 0.62683 0 1 51220 8831 34004 34025 50141 50141 0.1126532432199383 VLPKDMPE 8 Unmodified _VLPKDMPE_ 0 0 0 tr|U7SMH5|U7SMH5_FUSNUL-erythro-3,5-diaminohexanoatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01868PE=4SV=1 tr|U7SMH5|U7SMH5_FUSNUL-erythro-3,5-diaminohexanoatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01868PE=4SV=1 tr|U7SMH5|U7SMH5_FUSNUL-erythro-3,5-diaminohexanoatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01868PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649475097656 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 156.25 1 150.96 150.46 151.46 -5.2854 0 0 0 0.2396 1 30310 30310 0.30703 0 1 51221 26009 34005 34026 50142 50142 0.00691620414204408 VLPKLVPP 8 Unmodified _VLPKLVPP_ 0 0 0 REV__ENST00000415142.1_2_2:99771544-99771709:+|nuORF REV__ENST00000415142.1_2_2:99771544-99771709:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 431.89141845703125 2 431.791664 861.568775 NaN NaN NaN NaN NaN NaN NaN 42.53 1 39.879 39.379 40.379 -2.651 0 0 0 0.21486 1 7659 7659 0.79363 0 1 + 51222 21451 34006 34027 50143 50143 0.1324534166756166 VLPLELKLR 9 Unmodified _VLPLELKLR_ 0 0 0 nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7;ENST00000492535.1_1_22:32889009-32894514:+|nuORF nc|ENSG00000100225|Q9Y3I1-3|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2739868164062 2 540.860609 1079.70667 0.39165 0.00021183 0.60878 0.00032926 1.0004 0.00054109 540.8596123568683 145.41 0.24434 140.47 140.34 140.59 -4.9445 8 6 2 0 0 0 0.87511 1 28129 28129 3.9444 0 1 2715400 51223 1939 34007 34028 50144 50144 0.17000045196164137 VLPPGMDLS 9 Unmodified _VLPPGMDLS_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 125.81 1 121.16 120.66 121.66 -4.6495 0 0 0 0.19622 1 24208 24208 0.40827 0 1 51224 6931 34008 34029 50145 50145 0.00691620414204408 VLPPGMDLS 9 Unmodified _VLPPGMDLS_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16510009765625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 175.27 1 170.38 169.88 170.88 -4.8916 0 0 0 0.19657 1 34933 34933 0.40827 0.335 1 51225 6931 34008 34029 50146 50146 0.00691620414204408 VLPRQRPRLRW 11 Unmodified _VLPRQRPRLRW_ 0 0 0 REV__ENST00000331593.5_1_1:39957407-39957644:+|nuORF REV__ENST00000331593.5_1_1:39957407-39957644:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 738.6996459960938 2 738.954761 1475.89497 NaN NaN NaN NaN NaN NaN NaN 175.56 1 170.66 170.16 171.16 -4.8961 0 0 0 0.22632 1 34991 34991 0.026206 0 1 + 51226 20618 34009 34030 50147 50147 0.17605715893159868 VLPRRARIL 9 Unmodified _VLPRRARIL_ 0 0 0 REV__nc|ENSG00000132773|Q96GM8-2|TOE1 REV__nc|ENSG00000132773|Q96GM8-2|TOE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7695922851562 2 547.369467 1092.72438 0.24553 0.0001344 -3.308 -0.0018107 -3.0624 -0.0016763 547.3675258070912 142.11 0.10187 137.46 137.38 137.48 -4.6493 4 2 2 0 0 0 0.88237 1 28070 28070 2.3027 0 1 1638700 + 51227 16133 34010 34031 50148 50148 0.18172805241692913 VLPSWVAMAI 10 Unmodified _VLPSWVAMAI_ 0 0 0 REV__ENST00000489171.5_1_10:45466954-45488774:+|nuORF REV__ENST00000489171.5_1_10:45466954-45488774:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7916259765625 2 543.804445 1085.59434 NaN NaN NaN NaN NaN NaN NaN 140.48 1 140.48 139.98 140.98 0 0 0 0 0.22588 1 27971 27971 10.824 1.4408 1 + 51228 22285 34011 34032 50149 50149 0.0549644812765564 VLPTHIWHFRY 11 Unmodified _VLPTHIWHFRY_ 0 0 0 REV__nc|ENSG00000166448|Q8N3G9|TMEM130 REV__nc|ENSG00000166448|Q8N3G9|TMEM130 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2642517089844 3 490.266456 1467.77754 NaN NaN NaN NaN NaN NaN NaN 79.819 1 76.143 75.643 76.643 -3.676 0 0 0 0.22632 1 15211 15211 1.4551 1.2831 1 + 51229 17851 34012 34033 50150 50150 0.06236138233680322 VLPTIRVPKA 10 Unmodified _VLPTIRVPKA_ 0 0 0 USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;USP5|p.F362Lfs*66|1|0.04|ENSG00000111667|chr12:6859493-6859494|-/A|frameshift_variant USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.778564453125 2 547.358234 1092.70191 0.33283 0.00018218 -2.962 -0.0016213 -2.6292 -0.0014391 547.8600190547501 145.2 0.10512 145.2 145.13 145.24 0 4 2 2 0 0 0 1.1302 1 29008 29008 0.043787 0 1 936830 51230 2632 34013 34034 50151 50151 0.15927161053423333 VLPTKPPNDI 10 Unmodified _VLPTKPPNDI_ 0 0 0 REV__ENSG00000171724|ENST00000302536|VAT1L REV__ENSG00000171724|ENST00000302536|VAT1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7678833007812 2 547.316232 1092.61791 0.22493 0.00012311 0.087449 4.7863E-05 0.31238 0.00017097 547.316153230633 88.359 0.69827 88.359 88.02 88.718 0 63 19 5 0 0 0 0.61964 1 17300 17300 18.146 0 1 12180000 + 51231 18244 34014 34035 50152 50152 0.0753058516584133 VLPVLKVLV 9 Unmodified _VLPVLKVLV_ 0 0 0 REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2745056152344 2 490.349346 978.684139 NaN NaN NaN NaN NaN NaN NaN 147.4 1 142.34 141.84 142.84 -5.0595 0 0 0 0.23508 1 28534 28534 2.3027 0 1 + 51232 13478 34015 34036 50153 50153 0.19394445798570814 VLPVLKVLV 9 Unmodified _VLPVLKVLV_ 0 0 0 REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2535095214844 2 490.349346 978.684139 NaN NaN NaN NaN NaN NaN NaN 147.46 1 142.4 141.9 142.9 -5.0595 0 0 0 0.23508 1 28546 28546 2.3027 0 1 + 51233 13478 34015 34036 50154 50154 0.19394445798570814 VLPVPLPG 8 Unmodified _VLPVPLPG_ 0 0 0 REV__ENSG00000101442|ENST00000243903|ACTR5 REV__ENSG00000101442|ENST00000243903|ACTR5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 397.25787353515625 2 396.254914 790.495276 -0.60561 -0.00023998 0.57895 0.00022941 -0.026661 -1.0564E-05 396.25504127751594 26.049 0.4521 24.127 23.882 24.335 -1.9222 31 12 3 0 0 0 8448 1 4289 4289 1.3295 0 1 3453600 + 51234 14788 34016 34037 50155 50155 0.09164793225090762 VLPVPLPG 8 Unmodified _VLPVPLPG_ 0 0 0 REV__ENSG00000101442|ENST00000243903|ACTR5 REV__ENSG00000101442|ENST00000243903|ACTR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 396.254914 790.495276 -0.016407 -6.5015E-06 0.16044 6.3577E-05 0.14404 5.7075E-05 396.2549019623399 24.138 0.54272 24.138 23.863 24.406 0 -0.0014449 -2.0175E-05 NaN 1.3295 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 5632000 + 51235 14788 34016 34037 0.09164793225090762 VLPVPLPG 8 Unmodified _VLPVPLPG_ 0 0 0 REV__ENSG00000101442|ENST00000243903|ACTR5 REV__ENSG00000101442|ENST00000243903|ACTR5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 396.254914 790.495276 0.092346 3.6592E-05 -0.13946 -5.5261E-05 -0.047114 -1.8669E-05 396.2547791308451 25.788 0.48215 24.154 23.926 24.408 -1.6347 0.014022 -0.00025785 NaN 1.3295 31 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4400000 + 51236 14788 34016 34037 0.09164793225090762 VLPVPLPG 8 Unmodified _VLPVPLPG_ 0 0 0 REV__ENSG00000101442|ENST00000243903|ACTR5 REV__ENSG00000101442|ENST00000243903|ACTR5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 396.254914 790.495276 -0.60561 -0.00023998 0.57895 0.00022941 -0.026661 -1.0564E-05 396.25504127751594 26.049 0.4521 24.127 23.882 24.335 -1.9222 -0.012577 0.00031149 NaN 1.3295 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3453600 + 51237 14788 34016 34037 0.09164793225090762 VLQAIRKT 8 Unmodified _VLQAIRKT_ 0 0 0 KBTBD2-CYFIP1|1|fusion;ENSG00000273749|ENST00000617928|CYFIP1;CYFIP1|p.V518A|1|0.3|ENSG00000273749|chr15:22917909-22917909|A/G|missense_variant;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2 KBTBD2-CYFIP1|1|fusion KBTBD2-CYFIP1|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 15.757 1 14.541 14.041 15.041 -1.2159 0 0 0 0.2396 1 2446 2446 0.12286 0 1 51238 8012 34017 34038 50156 50156 0.11986056922410171 VLQDTVEQL 9 Unmodified _VLQDTVEQL_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7009887695312 2 522.782222 1043.54989 -0.44455 -0.0002324 0.6241 0.00032627 0.17955 9.3864E-05 522.7824451840738 103.87 0.69 99.519 99.249 99.939 -4.346 41 19 3 0 0 0 0.2219 1 19892 19892 36.127 3.3413 1 3872400 51239 5775 34018 34039 50157 50157 0.029857155152058112 VLQEWKIY 8 Unmodified _VLQEWKIY_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201416015625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 111.75 1 111.75 111.25 112.25 0 0 0 0 0.21486 1 21985 21985 1.8442 0.19162 1 51240 1266 34019 34040 50158 50158 0.05019217482708882 VLQGKLAEV 9 Unmodified _VLQGKLAEV_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7219543457031 2 478.792392 955.570232 0.15935 7.6295E-05 -0.071723 -3.434E-05 0.087627 4.1955E-05 478.7923299586758 106.45 0.62851 106.45 106.09 106.72 0 32 17 2 0 0 0 0.034704 1 20897 20897 78.149 0 1 4792200 51241 3487 34020 34041 50159 50159 0.09066930965650499 VLQHDQQRFRN 11 Unmodified _VLQHDQQRFRN_ 0 0 0 REV__ENST00000480991.1_1_1:1597188-1601283:-|nuORF REV__ENST00000480991.1_1_1:1597188-1601283:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2432556152344 3 480.920008 1439.73819 NaN NaN NaN NaN NaN NaN NaN 58.204 1 54.952 54.452 55.452 -3.2517 0 0 0 0.22632 1 10813 10813 0.026206 0 1 + 51242 22170 34021 34042 50160 50160 0.03591386212156067 VLQKENLAP 9 Unmodified _VLQKENLAP_ 0 0 0 REV__ENSG00000178772|ENST00000323830|CPN2 REV__ENSG00000178772|ENST00000323830|CPN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 506.7134094238281 2 506.295299 1010.57605 0.023294 1.1794E-05 -3.077 -0.0015579 -3.0537 -0.0015461 506.295385980484 91.841 1.3406 88.033 87.444 88.785 -3.8083 74 38 3 0 0 0 0.52768 1 17547 17547 0.40827 0 1 2025100 + 51243 18618 34022 34043 50161 50161 0.07118029477328491 VLQKENLAP 9 Unmodified _VLQKENLAP_ 0 0 0 REV__ENSG00000178772|ENST00000323830|CPN2 REV__ENSG00000178772|ENST00000323830|CPN2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 506.295299 1010.57605 -0.045243 -2.2906E-05 -2.4775 -0.0012544 -2.5228 -0.0012773 506.29549277530333 92.038 1.2106 87.943 87.427 88.638 -4.0946 -0.045038 0.00031321 NaN 0.40827 71 34 3 NaN NaN NaN NaN 0 NaN NaN 0 2108800 + 51244 18618 34022 34043 0.07118029477328491 VLQKIFML 8 Unmodified _VLQKIFML_ 0 0 0 REV__nc|ENSG00000198589|P50851-2|LRBA REV__nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 496.7943420410156 2 496.304081 990.59361 -0.0019927 -9.8898E-07 0.48352 0.00023997 0.48153 0.00023899 496.3042420975837 131.6 0.99506 126.8 125.91 126.9 -4.799 34 27 2 0 0 0 8448 1 25311 25311 0.12286 0 1 1180200 + 51245 19425 34023 34044 50162 50162 0.09793653478641318 VLQKIFML 8 Unmodified _VLQKIFML_ 0 0 0 REV__nc|ENSG00000198589|P50851-2|LRBA REV__nc|ENSG00000198589|P50851-2|LRBA MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 496.7943420410156 2 496.304081 990.59361 -0.0019927 -9.8898E-07 0.48352 0.00023997 0.48153 0.00023899 496.3042420975837 131.6 0.99506 126.8 125.91 126.9 -4.799 34 27 2 0 0 0 0.89712 1 25311 25311 0.12286 0 1 1180200 + 51246 19425 34023 34044 50163 50163 0.09793653478641318 VLQLLLRIRR 10 Unmodified _VLQLLLRIRR_ 0 0 0 ENST00000367869.1_3_6:134274441-134290035:+|nuORF ENST00000367869.1_3_6:134274441-134290035:+|nuORF ENST00000367869.1_3_6:134274441-134290035:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.2935485839844 3 427.294346 1278.86121 NaN NaN NaN NaN NaN NaN NaN 4.2876 1 3.6613 3.1613 4.1613 -0.62626 0 0 0 0.22588 1 56 56 0 0 1 51247 9084 34024 34045 50164 50164 0.23293294401378262 VLQLLLRIRR 10 Unmodified _VLQLLLRIRR_ 0 0 0 ENST00000367869.1_3_6:134274441-134290035:+|nuORF ENST00000367869.1_3_6:134274441-134290035:+|nuORF ENST00000367869.1_3_6:134274441-134290035:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.29364013671875 3 427.294346 1278.86121 NaN NaN NaN NaN NaN NaN NaN 8.8239 1 8.0297 7.5297 8.5297 -0.79424 0 0 0 0.22588 1 959 959 0 0 1 51248 9084 34024 34045 50165 50165 0.23293294401378262 VLQLLLRIRR 10 Unmodified _VLQLLLRIRR_ 0 0 0 ENST00000367869.1_3_6:134274441-134290035:+|nuORF ENST00000367869.1_3_6:134274441-134290035:+|nuORF ENST00000367869.1_3_6:134274441-134290035:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 427.29364013671875 3 427.294346 1278.86121 NaN NaN NaN NaN NaN NaN NaN 4.1352 1 3.0953 2.5953 3.5953 -1.04 0 0 0 0.22588 1 33 33 0.13989 0 1 51249 9084 34024 34045 50166 50166 0.23293294401378262 VLQMAISFL 9 Unmodified _VLQMAISFL_ 0 0 0 CAND1|p.S709L|1|0.32|ENSG00000111530|chr12:67305794-67305794|C/T|missense_variant CAND1|p.S709L|1|0.32|ENSG00000111530|chr12:67305794-67305794|C/T|missense_variant CAND1|p.S709L|1|0.32|ENSG00000111530|chr12:67305794-67305794|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.20684814453125 3 341.196539 1020.56779 NaN NaN NaN NaN NaN NaN NaN 83.869 1 83.869 83.369 84.369 0 0 0 0 0.23508 1 16352 16352 1.0715 0 1 51250 377 34025 34046 50167 50167 0.05832759236329821 VLQMKEKLEK 10 Unmodified _VLQMKEKLEK_ 0 0 0 REV__ENSG00000225973|ENST00000436697|PIGBOS1 REV__ENSG00000225973|ENST00000436697|PIGBOS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7693481445312 2 623.365398 1244.71624 0.57554 0.00035877 0.61629 0.00038417 1.1918 0.00074294 623.3677246009084 152.42 0.21106 147.25 147.05 147.26 -5.1759 6 5 2 0 0 0 0.82238 1 29526 29526 17.113 0 1 1673900 + 51251 19727 34026 34047 50168 50168 0.10367445419387877 VLQNLGTGR 9 Unmodified _VLQNLGTGR_ 0 0 0 REV__ENST00000286096.8_2_16:27214818-27221541:+|nuORF REV__ENST00000286096.8_2_16:27214818-27221541:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7222900390625 2 479.277441 956.540328 -0.14967 -7.1731E-05 1.0802 0.00051771 0.93052 0.00044598 479.2770841857289 21.855 0.17881 20.471 20.348 20.527 -1.3847 6 4 2 0 0 0 0.85111 1 3444 3444 6.7232 0.51738 1 202360 + 51252 20330 34027 34048 50169 50169 0.06031992020336929 VLQQHLETL 9 Unmodified _VLQQHLETL_ 0 0 0 ENSG00000140382|ENST00000336216|HMG20A ENSG00000140382|ENST00000336216|HMG20A ENSG00000140382|ENST00000336216|HMG20A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.281005859375 2 540.806031 1079.59751 0.56915 0.0003078 0.23692 0.00012813 0.80606 0.00043592 540.8061831718541 81.814 0.35273 81.814 81.716 82.068 0 13 9 2 0 0 0 0.045725 1 15948 15948 72.968 19.135 1 1360600 51253 4294 34028 34049 50170 50170 0.060894145060501614 VLQQHLETL 9 Unmodified _VLQQHLETL_ 0 0 0 ENSG00000140382|ENST00000336216|HMG20A ENSG00000140382|ENST00000336216|HMG20A ENSG00000140382|ENST00000336216|HMG20A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.26171875 2 540.806031 1079.59751 0.31114 0.00016826 -0.67299 -0.00036396 -0.36186 -0.00019569 541.3073374562654 85.648 0.41504 81.698 81.492 81.907 -3.9503 16 11 2 0 0 0 0.12505 1 16313 16313 47.749 17.112 1 1047800 51254 4294 34028 34049 50171 50171 0.060894145060501614 VLQQHLETL 9 Unmodified _VLQQHLETL_ 0 0 0 ENSG00000140382|ENST00000336216|HMG20A ENSG00000140382|ENST00000336216|HMG20A ENSG00000140382|ENST00000336216|HMG20A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2833251953125 2 540.806031 1079.59751 0.1195 6.4627E-05 0.037224 2.0131E-05 0.15673 8.4758E-05 540.805816147214 85.482 0.40955 81.77 81.598 82.008 -3.7117 19 11 2 0 0 0 0.019708 1 16344 16344 92.653 20.731 1 1412500 51255 4294 34028 34049 50172 50172 0.060894145060501614 VLQQPKVKIV 10 Unmodified _VLQQPKVKIV_ 0 0 0 REV__CON__Q0VCM5 REV__CON__Q0VCM5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3312377929688 2 576.379166 1150.74378 NaN NaN NaN NaN NaN NaN NaN 142.14 1 137.48 136.98 137.98 -4.6537 0 0 0 0.22588 1 28090 28090 3.9444 0 1 + + 51256 13531 34029 34050 50173 50173 0.174437167419228 VLQVPTHVEE 10 Unmodified _VLQVPTHVEE_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3363647460938 2 575.808771 1149.60299 0.053338 3.0712E-05 -0.14065 -8.0985E-05 -0.087307 -5.0272E-05 575.8086456647694 57.488 0.97359 57.488 56.986 57.96 0 82 27 4 0 0 0 0.61964 1 11073 11073 18.146 0 1 13459000 51257 6585 34030 34051 50174 50174 0.03417093297844076 VLQYLPFQA 9 Unmodified _VLQYLPFQA_ 0 0 0 FCGBP-ACSS2|1|fusion;ENSG00000275395|ENST00000616721|FCGBP;nc|ENSG00000275395|Q9Y6R7|FCGBP FCGBP-ACSS2|1|fusion FCGBP-ACSS2|1|fusion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2017517089844 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 91.076 1 91.076 90.576 91.576 0 0 0 0 0.23508 1 17795 17795 4.897 0.56777 1 51258 8024 34031 34052 50175 50175 0.05019217482708882 VLQYVVPEV 9 Unmodified _VLQYVVPEV_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6875 2 523.30005 1044.58555 0.19276 0.00010087 0.19468 0.00010188 0.38744 0.00020275 523.3000687886781 149.04 1.0096 149.04 148.43 149.44 0 72 28 3 0 0 0 0.07121 1 29785 29785 78.149 18.075 1 14211000 51259 2429 34032 34053 50176 50176 0.06503797762843533 VLQYVVPEV 9 Unmodified _VLQYVVPEV_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 524.8045043945312 2 523.30005 1044.58555 -0.052922 -2.7694E-05 0.34446 0.00018026 0.29154 0.00015256 523.3001298568723 153.94 1.0915 149.17 148.69 149.78 -4.7684 91 30 4 0 0 0 0.10537 1 30563 30563 22.621 7.634 1 21643000 51260 2429 34032 34053 50177 50177 0.06503797762843533 VLQYVVPEV 9 Unmodified _VLQYVVPEV_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6873779296875 2 523.30005 1044.58555 -0.43475 -0.00022751 0.7584 0.00039687 0.32365 0.00016936 523.3003914792691 154.54 1.0199 149.25 148.8 149.82 -5.2854 77 28 3 0 0 0 0.086188 1 30011 30011 74.929 38.802 1 13942000 51261 2429 34032 34053 50178 50178 0.06503797762843533 VLQYVVPEV 9 Unmodified _VLQYVVPEV_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6883544921875 2 523.30005 1044.58555 0.4426 0.00023161 -0.22957 -0.00012013 0.21303 0.00011148 523.2998126615219 154.47 0.95456 149.21 148.73 149.69 -5.2526 70 26 3 0 0 0 0.045272 1 29938 29938 85.272 22.699 1 14676000 51262 2429 34032 34053 50179 50179 0.06503797762843533 VLRCNDPG 8 Unmodified _VLRCNDPG_ 0 0 0 REV__ENST00000465596.1_1_1:155167924-155169629:-|nuORF REV__ENST00000465596.1_1_1:155167924-155169629:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21728515625 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 91.5 1 87.406 86.906 87.906 -4.0946 0 0 0 0.21486 1 17433 17433 10.183 4.423 1 + 51263 15333 34033 34054 50180 50180 -0.023875877026057424 VLRKDLRDH 9 Unmodified _VLRKDLRDH_ 0 0 0 TRAF3|p.N285Kfs*13|1|0.37|ENSG00000131323|chr14:102897288-102897289|-/A|frameshift_variant;nc|ENSG00000131323|Q13114-2|TRAF3;TRAF3|p.F475Lfs*20|1|0.28|ENSG00000131323|chr14:102905497-102905497|T/-|frameshift_variant;ENSG00000131323|ENST00000392745|TRAF3;ENST00000558880.1_1_14:103342047-103342973:+|nuORF TRAF3|p.N285Kfs*13|1|0.37|ENSG00000131323|chr14:102897288-102897289|-/A|frameshift_variant TRAF3|p.N285Kfs*13|1|0.37|ENSG00000131323|chr14:102897288-102897289|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.337890625 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 175.49 1 170.6 170.1 171.1 -4.8916 0 0 0 0.23508 1 34977 34977 4.3292 0 1 51264 3666 34034 34055 50181 50181 0.08778730240078403 VLRKKAVP 8 Unmodified _VLRKKAVP_ 0 0 0 ENST00000348806.10_1_15:43863764-43863980:-|nuORF ENST00000348806.10_1_15:43863764-43863980:-|nuORF ENST00000348806.10_1_15:43863764-43863980:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.2117919921875 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 94.104 1 90.114 89.614 90.614 -3.9907 0 0 0 0.21486 1 18435 18435 1.8442 0 1 51265 8919 34035 34056 50182 50182 0.15394951164694248 VLRKKAVP 8 Unmodified _VLRKKAVP_ 0 0 0 ENST00000348806.10_1_15:43863764-43863980:-|nuORF ENST00000348806.10_1_15:43863764-43863980:-|nuORF ENST00000348806.10_1_15:43863764-43863980:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.17547607421875 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 102.1 1 98.082 97.582 98.582 -4.0212 0 0 0 0.21486 1 19621 19621 1.8442 0 1 51266 8919 34035 34056 50183 50183 0.15394951164694248 VLRKKAVP 8 Unmodified _VLRKKAVP_ 0 0 0 ENST00000348806.10_1_15:43863764-43863980:-|nuORF ENST00000348806.10_1_15:43863764-43863980:-|nuORF ENST00000348806.10_1_15:43863764-43863980:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.1242980957031 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 103.86 1 99.809 99.309 100.31 -4.0543 0 0 0 0.23837 1 19971 19971 0.62683 0 1 51267 8919 34035 34056 50184 50184 0.15394951164694248 VLRKLVKII 9 Unmodified _VLRKLVKII_ 0 0 0 REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1 REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2642211914062 2 541.394619 1080.77469 NaN NaN NaN NaN NaN NaN NaN 164.61 1 164.61 164.11 165.11 0 0 0 0 0.23508 1 33306 33306 2.0598 0 1 + 51268 25327 34036 34057 50185 50185 0.23752914846841122 VLRKLVKII 9 Unmodified _VLRKLVKII_ 0 0 0 REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1 REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2672119140625 2 541.394619 1080.77469 0.31259 0.00016924 1.7551 0.00095021 2.0677 0.0011194 541.8954136058777 139.54 0.1772 139.54 139.4 139.57 0 5 4 2 0 0 0 0.88237 1 27742 27742 0.6015 0 1 2514400 + 51269 25327 34036 34057 50186 50186 0.23752914846841122 VLRKLVKII 9 Unmodified _VLRKLVKII_ 0 0 0 REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1 REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2792358398438 2 541.394619 1080.77469 NaN NaN NaN NaN NaN NaN NaN 166.76 1 161.97 161.47 162.47 -4.7898 0 0 0 0.19624 1 33541 33541 0.40827 0.335 1 + 51270 25327 34036 34057 50187 50187 0.23752914846841122 VLRKLVKII 9 Unmodified _VLRKLVKII_ 0 0 0 REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1 REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2821655273438 2 541.394619 1080.77469 0.33109 0.00017925 1.1884 0.00064339 1.5195 0.00082264 541.3979212059843 151.74 0.14142 146.99 146.92 147.06 -4.7524 5 3 2 0 0 0 0.88433 1 30144 30144 0.6015 0 1 1011600 + 51271 25327 34036 34057 50188 50188 0.23752914846841122 VLRKLVKII 9 Unmodified _VLRKLVKII_ 0 0 0 REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1 REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2739868164062 2 541.394619 1080.77469 0.28185 0.00015259 4.21 0.0022793 4.4919 0.0024319 541.3992791990444 144.75 0.24245 140.08 139.85 140.09 -4.6694 8 6 2 0 0 0 0.88237 1 28668 28668 0.6015 0 1 2221800 + 51272 25327 34036 34057 50189 50189 0.23752914846841122 VLRLLRRAP 9 Unmodified _VLRLLRRAP_ 0 0 0 REV__nc|ENSG00000161270|O60500-2|NPHS1 REV__nc|ENSG00000161270|O60500-2|NPHS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7698974609375 2 547.369467 1092.72438 NaN NaN NaN NaN NaN NaN NaN 168.54 1 168.54 168.04 169.04 0 0 0 0 0.23508 1 34524 34524 0.6015 0 1 + 51273 17453 34037 34058 50190 50190 0.18172805241692913 VLRLPKQQL 9 Unmodified _VLRLPKQQL_ 0 0 0 GTPBP8|p.Y61Tfs*18|1|0.3|ENSG00000163607|chr3:112991175-112991175|C/-|frameshift_variant;nc|ENSG00000163607|Q8N3Z3-3|GTPBP8;GTPBP8|p.F131Hfs*20|1|0.49|ENSG00000163607|chr3:112993080-112993083|TTTT/-|frameshift_variant;GTPBP8|p.T206Nfs*10|1|0.36|ENSG00000163607|chr3:112996935-112996936|-/A|frameshift_variant;nc|ENSG00000163607|Q8N3Z3-2|GTPBP8;ENSG00000163607|ENST00000383678|GTPBP8 GTPBP8|p.Y61Tfs*18|1|0.3|ENSG00000163607|chr3:112991175-112991175|C/-|frameshift_variant GTPBP8|p.Y61Tfs*18|1|0.3|ENSG00000163607|chr3:112991175-112991175|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7831420898438 2 547.855858 1093.69716 NaN NaN NaN NaN NaN NaN NaN 116.88 1 112.39 111.89 112.89 -4.486 0 0 0 0.19626 1 23041 23041 0.073264 0 1 51274 5444 34038 34059 50191 50191 0.15406276910653105 VLRRILRRA 9 Unmodified _VLRRILRRA_ 0 0 0 nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1;AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant;ENSG00000124608|ENST00000244571|AARS2 nc|ENSG00000090861|P49588-2|AARS1;AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant nc|ENSG00000090861|P49588-2|AARS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3277587890625 2 576.893641 1151.77273 0.17306 9.9838E-05 0.63638 0.00036712 0.80944 0.00046696 576.8950757825015 127.25 0.10761 122.55 122.46 122.57 -4.6998 4 2 2 0 0 0 0.63929 1 24475 24475 0.0033805 0 1 821410 51275 1793;3 34039 34060 50192 50192 0.20291298881602415 VLRRLLRQR 9 Unmodified _VLRRLLRQR_ 0 0 0 ENST00000391858.8_1_1:231473224-231473434:+|nuORF ENST00000391858.8_1_1:231473224-231473434:+|nuORF ENST00000391858.8_1_1:231473224-231473434:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 303.1996154785156 4 303.205825 1208.79419 -0.42847 -0.00012992 0.28943 8.7758E-05 -0.13904 -4.2158E-05 303.45633815390426 103.91 0.71744 99.696 99.413 100.13 -4.2183 24 20 2 0 0 0 0.88469 1 20392 20392 0.23584 0 1 1024300 51276 9362 34040 34061 50193 50193 0.19814683910294661 VLRRLPRR 8 Unmodified _VLRRLPRR_ 0 0 0 REV__ENST00000591473.1_1_19:36705638-36705767:-|nuORF REV__ENST00000591473.1_1_19:36705638-36705767:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.28076171875 2 533.359434 1064.70431 NaN NaN NaN NaN NaN NaN NaN 161.84 1 157.05 156.55 157.55 -4.7898 0 0 0 0.2396 1 32188 32188 0.0082765 0 1 + 51277 23336 34041 34062 50194 50194 0.17455054301740347 VLRRLRPIT 9 Unmodified _VLRRLRPIT_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.F1091Lfs*4|1|0.38|ENSG00000116641|chr1:62539572-62539572|A/-|frameshift_variant;DOCK7|p.F1836Dfs*12|1|0.05|ENSG00000116641|chr1:62477795-62477796|-/TGTC|frameshift_variant;nc|ENSG00000116641|Q96N67-7|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2142028808594 3 375.252258 1122.73495 NaN NaN NaN NaN NaN NaN NaN 176.79 1 171.91 171.41 172.41 -4.8739 0 0 0 0.19631 1 35175 35175 0.20686 0 1 51278 2937 34042 34063 50195 50195 0.17848787896105023 VLRRSRFYIY 10 Unmodified _VLRRSRFYIY_ 0 0 0 REV__nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5 REV__nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2334899902344 3 458.266456 1371.77754 0.29208 0.00013385 -1.0422 -0.0004776 -0.75012 -0.00034375 458.26591198384 125.23 0.59793 120.46 120.16 120.76 -4.7681 38 16 3 0 0 0 0.53264 1 23998 23998 0.043787 0.042406 1 2062400 + 51279 14693 34043 34064 50196 50196 0.10652138233717778 VLRSRIRF 8 Unmodified _VLRSRIRF_ 0 0 0 ENST00000553880.5_1_14:77751822-77757690:-|nuORF;ENST00000452340.7_1_14:77746025-77787024:-|nuORF;ENSG00000009830|ENST00000261534|POMT2 ENST00000553880.5_1_14:77751822-77757690:-|nuORF ENST00000553880.5_1_14:77751822-77757690:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6998291015625 2 523.832717 1045.65088 -0.46708 -0.00024467 -2.9491 -0.0015448 -3.4161 -0.0017895 523.8311626737071 141.02 0.20816 136.03 135.85 136.06 -4.9877 7 5 2 0 0 0 0.98792 1 27120 27120 9.3474 0.75416 1 3040500 51280 1055 34044 34065 50197 50197 0.1298825679921265 VLRTKEAF 8 Unmodified _VLRTKEAF_ 0 0 0 ENSG00000156876|ENST00000287482|SASS6;ENST00000462159.1_1_1:100573356-100598412:-|nuORF ENSG00000156876|ENST00000287482|SASS6 ENSG00000156876|ENST00000287482|SASS6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7826232910156 2 482.284734 962.554916 0.40829 0.00019691 -0.40571 -0.00019567 0.0025836 1.246E-06 482.28459658952926 102.81 0.79137 102.81 102.45 103.24 0 58 22 4 0 0 0 0.66066 1 20172 20172 28.487 6.7402 1 4620200 51281 5108 34045 34066 50198 50198 0.07214064168454115 VLRVHELEE 9 Unmodified _VLRVHELEE_ 0 0 0 ENST00000585058.1_1_17:29852060-29852312:+|nuORF ENST00000585058.1_1_17:29852060-29852312:+|nuORF ENST00000585058.1_1_17:29852060-29852312:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.54400634765625 3 375.208384 1122.60332 -0.2365 -8.8735E-05 0.68503 0.00025703 0.44854 0.00016829 375.20847559973106 45.278 0.39496 42.488 42.31 42.705 -2.79 14 10 2 0 0 0 0.81492 1 8549 8549 1.0715 0.29493 1 856180 51282 11527 34046 34067 50199 50199 0.04692513017721467 VLRWRNKA 8 Unmodified _VLRWRNKA_ 0 0 0 REV__ENSG00000158106|ENST00000289013|RHPN1 REV__ENSG00000158106|ENST00000289013|RHPN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2823486328125 2 521.817067 1041.61958 NaN NaN NaN NaN NaN NaN NaN 162.14 1 157.35 156.85 157.85 -4.7898 0 0 0 0.21486 1 32254 32254 9.3474 0.75416 1 + 51283 17323 34047 34068 50200 50200 0.1004368376511593 VLSEENFKV 9 Unmodified _VLSEENFKV_ 0 0 0 ZC3HAV1|p.F145Lfs*49|2|0.2|ENSG00000105939|chr7:139089633-139089633|A/-|frameshift_variant;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1 ZC3HAV1|p.F145Lfs*49|2|0.2|ENSG00000105939|chr7:139089633-139089633|A/-|frameshift_variant ZC3HAV1|p.F145Lfs*49|2|0.2|ENSG00000105939|chr7:139089633-139089633|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2864379882812 2 532.784764 1063.55498 0.036948 1.9685E-05 0.32898 0.00017527 0.36593 0.00019496 533.2862208879498 96.455 0.58418 96.455 96.116 96.7 0 24 16 2 0 0 0 0.48707 1 18848 18848 20.415 4.5674 1 2473000 51284 2352 34048 34069 50201 50201 0.025740193777892273 VLSGRNEQY 9 Unmodified _VLSGRNEQY_ 0 0 0 REV__nc|ENSG00000186001|Q96II8-3|LRCH3 REV__nc|ENSG00000186001|Q96II8-3|LRCH3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2714233398438 2 533.269813 1064.52507 0.089657 4.7811E-05 -0.51726 -0.00027584 -0.4276 -0.00022803 533.2694148763226 111.94 0.73709 111.94 111.62 112.36 0 33 20 3 0 0 0 0.44856 1 21980 21980 0.40827 0 1 1688300 + 51285 19005 34049 34070 50202 50202 -0.004609195675357114 VLSGRVQAK 9 Unmodified _VLSGRVQAK_ 0 0 0 REV__ENST00000480041.1_1_X:48854502-48855745:-|nuORF REV__ENST00000480041.1_1_X:48854502-48855745:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 479.441650390625 2 479.295633 956.576714 NaN NaN NaN NaN NaN NaN NaN 12.41 1 11.28 10.78 11.78 -1.1293 0 0 0 0.19652 1 1519 1519 0.40827 0 1 + 51286 22159 34050 34071 50203 50203 0.0966886891702643 VLSHLQPLG 9 Unmodified _VLSHLQPLG_ 0 0 0 REV__ENSG00000130764|ENST00000378251|LRRC47 REV__ENSG00000130764|ENST00000378251|LRRC47 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7858581542969 2 482.284734 962.554916 -0.34808 -0.00016787 0.45628 0.00022006 0.10821 5.2186E-05 482.2849442910144 106.91 0.76651 102.65 102.18 102.95 -4.2638 60 21 4 0 0 0 0.62921 1 21054 21054 30.637 8.8899 1 7633800 + 51287 16031 34051 34072 50204 50204 0.07214064168465484 VLSHRRQVE 9 Unmodified _VLSHRRQVE_ 0 0 0 REV__ENSG00000159674|ENST00000290902|SPON2 REV__ENSG00000159674|ENST00000290902|SPON2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21368408203125 3 375.215873 1122.62579 NaN NaN NaN NaN NaN NaN NaN 90.392 1 86.614 86.114 87.114 -3.7779 0 0 0 0.19657 1 17298 17298 0.073264 0 1 + 51288 17379 34052 34073 50205 50205 0.06938157206013784 VLSINGKSL 9 Unmodified _VLSINGKSL_ 0 0 0 nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16 nc|ENSG00000172349|Q14005-4|IL16 nc|ENSG00000172349|Q14005-4|IL16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2513427734375 2 465.784567 929.554582 -0.16408 -7.6426E-05 0.1178 5.4868E-05 -0.046284 -2.1558E-05 465.7845721402145 58.164 0.58297 58.164 57.894 58.477 0 27 16 2 0 0 0 0.56623 1 11122 11122 27.629 2.6378 1 2640000 51289 6210 34053 34074 50206 50206 0.08698644448622872 VLSINGKSL 9 Unmodified _VLSINGKSL_ 0 0 0 nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16 nc|ENSG00000172349|Q14005-4|IL16 nc|ENSG00000172349|Q14005-4|IL16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2593078613281 2 465.784567 929.554582 -0.048772 -2.2717E-05 -0.0071937 -3.3507E-06 -0.055966 -2.6068E-05 465.7845371597245 60.865 0.59093 57.932 57.609 58.2 -2.9333 26 16 2 0 0 0 0.30909 1 11732 11732 41.956 41.956 1 3740500 51290 6210 34053 34074 50207 50207 0.08698644448622872 VLSINGKSL 9 Unmodified _VLSINGKSL_ 0 0 0 nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16 nc|ENSG00000172349|Q14005-4|IL16 nc|ENSG00000172349|Q14005-4|IL16 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 465.784567 929.554582 0.06202 2.8888E-05 -0.046027 -2.1439E-05 0.015992 7.4489E-06 465.7844798193231 61.335 0.56192 57.965 57.691 58.253 -3.3694 -0.030746 -2.2429E-05 NaN 41.956 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2656000 51291 6210 34053 34074 0.08698644448622872 VLSINGKSL 9 Unmodified _VLSINGKSL_ 0 0 0 nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16 nc|ENSG00000172349|Q14005-4|IL16 nc|ENSG00000172349|Q14005-4|IL16 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 465.784567 929.554582 0.18109 8.4349E-05 -0.12437 -5.7928E-05 0.056725 2.6422E-05 465.78443072969293 61.163 0.5906 57.923 57.65 58.24 -3.2395 -0.072949 -9.5407E-05 NaN 41.956 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2462600 51292 6210 34053 34074 0.08698644448622872 VLSKIRVF 8 Unmodified _VLSKIRVF_ 0 0 0 REV__OSMR|p.N900Tfs*3|1|0.34|ENSG00000145623|chr5:38933197-38933197|A/-|frameshift_variant REV__OSMR|p.N900Tfs*3|1|0.34|ENSG00000145623|chr5:38933197-38933197|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2423095703125 2 481.313295 960.612037 NaN NaN NaN NaN NaN NaN NaN 177.05 1 172.15 171.65 172.65 -4.9008 0 0 0 0.2396 1 35306 35306 0.12286 0 1 + 51293 16843 34054 34075 50208 50208 0.13015531444852968 VLSKKKKKK 9 Unmodified _VLSKKKKKK_ 0 0 0 ENST00000448876.5_1_3:185009682-185009805:+|nuORF ENST00000448876.5_1_3:185009682-185009805:+|nuORF ENST00000448876.5_1_3:185009682-185009805:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7857055664062 2 543.889701 1085.76485 NaN NaN NaN NaN NaN NaN NaN 151.38 1 151.38 150.88 151.88 0 0 0 0 0.19635 1 30315 30315 0 0 1 51294 9960 34055 34076 50209 50209 0.22539726841455376 VLSKKKKKK 9 Unmodified _VLSKKKKKK_ 0 0 0 ENST00000448876.5_1_3:185009682-185009805:+|nuORF ENST00000448876.5_1_3:185009682-185009805:+|nuORF ENST00000448876.5_1_3:185009682-185009805:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.78857421875 2 543.889701 1085.76485 0.34144 0.00018571 0.68918 0.00037484 1.0306 0.00056055 544.3913926165114 152.14 0.11021 147.38 147.31 147.42 -4.7523 4 2 2 0 0 0 0.88433 1 30226 30226 0 0 1 759770 51295 9960 34055 34076 50210 50210 0.22539726841455376 VLSKKKKKK 9 Unmodified _VLSKKKKKK_ 0 0 0 ENST00000448876.5_1_3:185009682-185009805:+|nuORF ENST00000448876.5_1_3:185009682-185009805:+|nuORF ENST00000448876.5_1_3:185009682-185009805:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7733764648438 2 543.889701 1085.76485 0.4364 0.00023735 4.2189 0.0022946 4.6553 0.002532 544.3926107112604 150.07 0.17656 144.95 144.82 145 -5.1204 5 4 2 0 0 0 0.88278 1 29077 29077 0.52476 0.52476 1 1409100 51296 9960 34055 34076 50211 50211 0.22539726841455376 VLSKVEEEYFE 11 Unmodified _VLSKVEEEYFE_ 0 0 0 tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1 tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1 tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2291259765625 3 457.894131 1370.66056 0.61925 0.00028355 0.49031 0.00022451 1.1096 0.00050806 457.89432437824604 103.5 0.77077 99.447 99.031 99.802 -4.0543 52 21 3 0 0 0 0.806 1 19874 19874 2.8433 0.21205 1 2927000 51297 26318 34056 34077 50212 50212 -0.009941092872168156 VLSMACLMLL 10 Unmodified _VLSMACLMLL_ 0 0 0 SLC7A10|p.R162W|1|0.36|ENSG00000130876|chr19:33212875-33212875|G/A|missense_variant;SLC7A10|p.I365Sfs*58|2|0.41|ENSG00000130876|chr19:33210823-33210823|G/-|frameshift_variant;ENSG00000130876|ENST00000253188|SLC7A10 SLC7A10|p.R162W|1|0.36|ENSG00000130876|chr19:33212875-33212875|G/A|missense_variant SLC7A10|p.R162W|1|0.36|ENSG00000130876|chr19:33212875-33212875|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7774047851562 2 547.294542 1092.57453 0.13242 7.2475E-05 -1.1062 -0.00060541 -0.97376 -0.00053293 547.294006173697 105.34 0.87115 100.96 100.39 101.26 -4.3764 41 24 2 0 0 0 0.35262 1 20134 20134 1.914 0 1 3804100 51298 3647 34057 34078 50213 50213 0.03194612801053154 VLSQKRCEDAY 11 Unmodified _VLSQKRCEDAY_ 0 0 0 ENST00000595585.1_1_19:51446889-51452204:-|nuORF;ENSG00000167754|ENST00000336334|KLK5 ENST00000595585.1_1_19:51446889-51452204:-|nuORF ENST00000595585.1_1_19:51446889-51452204:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.8758239746094 3 437.883572 1310.62889 NaN NaN NaN NaN NaN NaN NaN 11.265 1 10.361 9.8612 10.861 -0.90401 0 0 0 0.23698 1 1480 1480 0.094841 0.094841 1 51299 5845 34058 34079 50214 50214 -0.014003805221591392 VLSQLPLLKA 10 Unmodified _VLSQLPLLKA_ 0 0 0 CYP27B1|p.H441Tfs*33|2|0.49|ENSG00000111012|chr12:57763703-57763703|G/-|frameshift_variant;ENSG00000111012|ENST00000228606|CYP27B1 CYP27B1|p.H441Tfs*33|2|0.49|ENSG00000111012|chr12:57763703-57763703|G/-|frameshift_variant CYP27B1|p.H441Tfs*33|2|0.49|ENSG00000111012|chr12:57763703-57763703|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2815551757812 2 541.352617 1080.69068 NaN NaN NaN NaN NaN NaN NaN 163.15 1 163.15 162.65 163.65 0 0 0 0 0.22588 1 32860 32860 3.5965 0.31518 1 51300 766 34059 34080 50215 50215 0.15356338959281857 VLTAQFVQ 8 Unmodified _VLTAQFVQ_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7593688964844 2 453.258185 904.501818 -0.097841 -4.4347E-05 -1.5928 -0.00072197 -1.6907 -0.00076632 453.25735219434483 102.02 0.45008 97.836 97.646 98.096 -4.1861 17 12 2 0 0 0 0.31517 1 20044 20044 36.044 0 1 1079500 51301 2454 34060 34081 50216 50216 0.04574686385808491 VLTAQFVQ 8 Unmodified _VLTAQFVQ_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 453.258185 904.501818 0.26764 0.00012131 -2.2053 -0.00099958 -1.9377 -0.00087827 453.25715231286574 102.2 0.61404 97.875 97.64 98.254 -4.3208 0.039942 -0.00031098 NaN 36.044 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1092100 51302 2454 34060 34081 0.04574686385808491 VLTGGSVS 8 Unmodified _VLTGGSVS_ 0 0 0 REV__ENST00000323460.9_1_3:196658379-196658646:+|nuORF REV__ENST00000323460.9_1_3:196658379-196658646:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 90.22 1 90.22 89.72 90.72 0 0 0 0 0.21486 1 17623 17623 5.7604 0 1 + 51303 20566 34061 34082 50217 50217 0.015661625349594033 VLTVSSGG 8 Unmodified _VLTVSSGG_ 0 0 0 REV__nc|ENSG00000182253|O15061-2|SYNM REV__nc|ENSG00000182253|O15061-2|SYNM MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2009582519531 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 152.67 1 152.67 152.17 153.17 0 0 0 0 0.21486 1 30583 30583 0.69038 0 1 + 51304 18769 34062 34083 50218 50218 0.01566162534970772 VLTVSSGG 8 Unmodified _VLTVSSGG_ 0 0 0 REV__nc|ENSG00000182253|O15061-2|SYNM REV__nc|ENSG00000182253|O15061-2|SYNM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2018737792969 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 156.36 1 151.08 150.58 151.58 -5.2854 0 0 0 0.21486 1 30334 30334 2.5775 0 1 + 51305 18769 34062 34083 50219 50219 0.01566162534970772 VLTVSSGG 8 Unmodified _VLTVSSGG_ 0 0 0 REV__nc|ENSG00000182253|O15061-2|SYNM REV__nc|ENSG00000182253|O15061-2|SYNM MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016906738281 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 157.78 1 152.51 152.01 153.01 -5.2712 0 0 0 0.21486 1 30607 30607 0.69038 0 1 + 51306 18769 34062 34083 50220 50220 0.01566162534970772 VLVHILLR 8 Unmodified _VLVHILLR_ 0 0 0 PIK3R6|p.R55H|1|0.35|ENSG00000276231|chr17:8838589-8838589|C/T|missense_variant PIK3R6|p.R55H|1|0.35|ENSG00000276231|chr17:8838589-8838589|C/T|missense_variant PIK3R6|p.R55H|1|0.35|ENSG00000276231|chr17:8838589-8838589|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7787780761719 2 481.829112 961.643671 NaN NaN NaN NaN NaN NaN NaN 9.4957 1 8.4312 7.9312 8.9312 -1.0645 0 0 0 0.2396 1 1017 1017 0 0 1 51307 12789 34063 34084 50221 50221 0.16131524198806346 VLVHILLR 8 Unmodified _VLVHILLR_ 0 0 0 PIK3R6|p.R55H|1|0.35|ENSG00000276231|chr17:8838589-8838589|C/T|missense_variant PIK3R6|p.R55H|1|0.35|ENSG00000276231|chr17:8838589-8838589|C/T|missense_variant PIK3R6|p.R55H|1|0.35|ENSG00000276231|chr17:8838589-8838589|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7787780761719 2 481.829112 961.643671 NaN NaN NaN NaN NaN NaN NaN 9.5096 1 8.4451 7.9451 8.9451 -1.0645 0 0 0 0.21486 1 1019 1019 0 0 1 51308 12789 34063 34084 50222 50222 0.16131524198806346 VLVIIIILKK 10 Unmodified _VLVIIIILKK_ 0 0 0 REV__ENSG00000166900|ENST00000337979|STX3 REV__ENSG00000166900|ENST00000337979|STX3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3261108398438 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 70.339 1 66.759 66.259 67.259 -3.5798 0 0 0 2.8426 1 13255 13255 0 0 1 + 51309 17887 34064 34085 50223 50223 0.2723152533792472 VLVIIIILKK 10 Unmodified _VLVIIIILKK_ 0 0 0 REV__ENSG00000166900|ENST00000337979|STX3 REV__ENSG00000166900|ENST00000337979|STX3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3261108398438 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 70.36 1 66.781 66.281 67.281 -3.5798 0 0 0 0.22588 1 13259 13259 0 0 1 + 51310 17887 34064 34085 50224 50224 0.2723152533792472 VLVIIIILKK 10 Unmodified _VLVIIIILKK_ 0 0 0 REV__ENSG00000166900|ENST00000337979|STX3 REV__ENSG00000166900|ENST00000337979|STX3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.316650390625 2 576.428128 1150.8417 NaN NaN NaN NaN NaN NaN NaN 104.75 1 100.41 99.905 100.91 -4.346 0 0 0 2.8426 1 20073 20073 0 0 1 + 51311 17887 34064 34085 50225 50225 0.2723152533792472 VLVIKARKL 9 Unmodified _VLVIKARKL_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 347.2628479003906 3 347.249855 1038.72774 NaN NaN NaN NaN NaN NaN NaN 12.145 1 12.145 11.645 12.645 0 0 0 0 0.1963 1 1670 1670 0 0 1 51312 5053;26536 34065 34086 50226 50226 0.2099205529568735 VLVILLIALV 10 Unmodified _VLVILLIALV_ 0 0 0 REV__ENSG00000135749|ENST00000258229|PCNX2 REV__ENSG00000135749|ENST00000258229|PCNX2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2840576171875 2 533.385929 1064.7573 NaN NaN NaN NaN NaN NaN NaN 133.7 1 133.7 133.2 134.2 0 0 0 0 0.22588 1 26453 26453 1.8442 0 1 + 51313 16287 34066 34087 50227 50227 0.22751574521157636 VLVKALHPRLK 11 Unmodified _VLVKALHPRLK_ 0 0 0 REV__NSUN5|p.G89Afs*27|1|0.31|ENSG00000130305|chr7:73307708-73307708|C/-|frameshift_variant REV__NSUN5|p.G89Afs*27|1|0.31|ENSG00000130305|chr7:73307708-73307708|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24560546875 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 71.927 1 68.3 67.8 68.8 -3.6275 0 0 0 0.22632 1 13574 13574 0 0 1 + 51314 15995 34067 34088 50228 50228 0.21390489652821998 VLVKRYED 8 Unmodified _VLVKRYED_ 0 0 0 ENSG00000172345|ENST00000302824|STARD5;ENST00000560723.5_1_15:81605599-81615081:-|nuORF ENSG00000172345|ENST00000302824|STARD5 ENSG00000172345|ENST00000302824|STARD5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 341.17889404296875 3 341.194075 1020.5604 NaN NaN NaN NaN NaN NaN NaN 108 1 103.59 103.09 104.09 -4.4121 0 0 0 0.21486 1 20722 20722 1.6526 0 1 51315 6209 34068 34089 50229 50229 0.05093742960275449 VLVLAEFF 8 Unmodified _VLVLAEFF_ 0 0 0 REV__ENST00000543425.1_1_12:124075023-124081273:+|nuORF REV__ENST00000543425.1_1_12:124075023-124081273:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 313.2008972167969 3 313.184628 936.532055 NaN NaN NaN NaN NaN NaN NaN 178.41 1 178.41 177.91 178.91 0 0 0 0 0.21486 1 36961 36961 0.45834 0 1 + 51316 14486 34069 34090 50230 50230 0.061250450509987786 VLVLLKLKI 9 Unmodified _VLVLLKLKI_ 0 0 0 REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1 REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 346.7847900390625 3 346.926489 1037.75764 NaN NaN NaN NaN NaN NaN NaN 12.241 1 12.241 11.741 12.741 0 0 0 0 0.1963 1 1691 1691 0 0 1 + 51317 24887 34070 34091 50231 50231 0.24026994241035027 VLVLLKLKI 9 Unmodified _VLVLLKLKI_ 0 0 0 REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1 REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 346.8775634765625 3 346.926489 1037.75764 NaN NaN NaN NaN NaN NaN NaN 14.814 1 13.641 13.141 14.141 -1.173 0 0 0 0.1963 1 2032 2032 0 0 1 + 51318 24887 34070 34091 50232 50232 0.24026994241035027 VLVLLLFLVIV 11 Unmodified _VLVLLLFLVIV_ 0 0 0 REV__TNFRSF21|p.M353V|1|0.34|ENSG00000146072|chr6:47284124-47284124|T/C|missense_variant REV__TNFRSF21|p.M353V|1|0.34|ENSG00000146072|chr6:47284124-47284124|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2373352050781 4 310.971531 1239.85702 -0.61912 -0.00019253 -1.2977 -0.00040355 -1.9168 -0.00059608 311.2212809392974 4.7173 0.21602 4.7173 4.5996 4.8157 0 8 5 2 0 0 0 0.82733 1 119 119 0 0 1 64875 + 51319 24826 34071 34092 50233 50233 0.24668392135095019 VLVLLLLLLL 10 Unmodified _VLVLLLLLLL_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 561.413330078125 2 561.417229 1120.8199 NaN NaN NaN NaN NaN NaN NaN 140.19 1 140.19 139.69 140.69 0 0 0 0 0.22588 1 27900 27900 0.45834 0 1 + 51320 15726 34072 34093 50234 50234 0.2643272058937782 VLVLLLRVLLL 11 Unmodified _VLVLLLRVLLL_ 0 0 0 ENST00000378944.9_1_19:36276198-36277438:+|nuORF ENST00000378944.9_1_19:36276198-36277438:+|nuORF ENST00000378944.9_1_19:36276198-36277438:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 632.5845947265625 2 632.459959 1262.90537 NaN NaN NaN NaN NaN NaN NaN 177.11 1 172.21 171.71 172.71 -4.9008 0 0 0 0.22632 1 35318 35318 0.094841 0.094841 1 51321 9289 34073 34094 50235 50235 0.28442885775029936 VLVPLAHQ 8 Unmodified _VLVPLAHQ_ 0 0 0 SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 439.23358154296875 2 438.76872 875.522887 -0.25276 -0.0001109 8.182E-05 3.59E-08 -0.25267 -0.00011087 438.76865851724335 79.458 0.39139 75.782 75.548 75.939 -3.676 17 10 2 0 0 0 8448 1 15128 15128 1.7423 0 1 1978400 51322 25669 34074 34095 50236 50236 0.08014696485327022 VLVPLAHQ 8 Unmodified _VLVPLAHQ_ 0 0 0 SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 438.76872 875.522887 0.38928 0.00017081 -0.54849 -0.00024066 -0.1592 -6.9853E-05 438.768466267268 76.142 0.55901 76.142 75.819 76.378 0 0.28124 -0.00030636 NaN 1.7423 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2650800 51323 25669 34074 34095 0.08014696485327022 VLVPLAHQ 8 Unmodified _VLVPLAHQ_ 0 0 0 SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 438.76872 875.522887 -0.097821 -4.2921E-05 -0.32901 -0.00014436 -0.42684 -0.00018728 438.76854915389754 79.27 0.66882 75.759 75.344 76.013 -3.5102 -0.10092 -0.00011376 NaN 1.7423 24 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1115600 51324 25669 34074 34095 0.08014696485327022 VLVPLAHQ 8 Unmodified _VLVPLAHQ_ 0 0 0 SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant SLC12A7|p.H686Pfs*230|1|0.37|ENSG00000113504|chr5:1074582-1074583|-/G|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 438.76872 875.522887 -0.10496 -4.6055E-05 -0.088982 -3.9043E-05 -0.19395 -8.5098E-05 438.7686052473006 79.563 0.49436 75.759 75.51 76.004 -3.8048 -0.10175 9.6873E-05 NaN 1.7423 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1388800 51325 25669 34074 34095 0.08014696485327022 VLVPLLRAEGF 11 Unmodified _VLVPLLRAEGF_ 0 0 0 ENSG00000141098|ENST00000268797|GFOD2;nc|ENSG00000141098|Q3B7J2-3|GFOD2 ENSG00000141098|ENST00000268797|GFOD2 ENSG00000141098|ENST00000268797|GFOD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 607.4029541015625 2 607.368798 1212.72304 NaN NaN NaN NaN NaN NaN NaN 166.45 1 166.45 165.95 166.95 0 0 0 0 0.22632 1 33911 33911 0.58532 0.58394 1 51326 4348 34075 34096 50237 50237 0.12519126362280986 VLVQECFPF 9 Unmodified _VLVQECFPF_ 0 0 0 REV__ENST00000555640.6_1_14:21463242-21464146:+|nuORF REV__ENST00000555640.6_1_14:21463242-21464146:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2758178710938 2 541.272978 1080.5314 NaN NaN NaN NaN NaN NaN NaN 153.31 1 153.31 152.81 153.81 0 0 0 0 0.23508 1 30714 30714 7.9102 0.62092 1 + 51327 22985 34076 34097 50238 50238 -0.005641176603603526 VLVRQRQVP 9 Unmodified _VLVRQRQVP_ 0 0 0 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217;REV__KIAA1217|p.G1042Efs*92|1|0.09|ENSG00000120549|chr10:24531867-24531867|G/-|frameshift_variant REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7899169921875 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 10.188 1 9.3938 8.8938 9.8938 -0.79424 0 0 0 0.23508 1 1252 1252 0.6015 0 1 + 51328 15625;23713 34077 34098 50239 50239 0.12892222108098395 VLVSGSGT 8 Unmodified _VLVSGSGT_ 0 0 0 tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1 tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1 tr|U7STC9|U7STC9_FUSNUPhosphoribosylglycinamideformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purNPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2019348144531 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 94.37 1 90.379 89.879 90.879 -3.9907 0 0 0 0.21486 1 18490 18490 10.183 0 1 51329 26140 34078 34099 50240 50240 0.015661625349594033 VLVSSVSDL 9 Unmodified _VLVSSVSDL_ 0 0 0 REV__nc|ENSG00000162670|Q76B58-2|BRINP3;REV__nc|ENSG00000198797|Q9C0B6-2|BRINP2 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2466735839844 2 459.760758 917.506963 0.29284 0.00013464 0.054569 2.5089E-05 0.34741 0.00015973 459.7605924057998 125.16 0.63046 120.39 120.16 120.79 -4.7681 34 17 3 0 0 0 0.085258 1 24047 24047 60.39 2.9182 1 2260700 + 51330 24128;19452 34079 34100 50241 50241 0.04490945457757789 VLVSSVSDL 9 Unmodified _VLVSSVSDL_ 0 0 0 REV__nc|ENSG00000162670|Q76B58-2|BRINP3;REV__nc|ENSG00000198797|Q9C0B6-2|BRINP2 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 459.760758 917.506963 0.056906 2.6163E-05 0.14037 6.4536E-05 0.19727 9.0699E-05 459.76077565178156 124.94 0.8762 120.34 119.92 120.79 -4.5984 -0.091201 0.00013742 NaN 60.39 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2680900 + 51331 24128;19452 34079 34100 0.04490945457757789 VLVSSVSDL 9 Unmodified _VLVSSVSDL_ 0 0 0 REV__nc|ENSG00000162670|Q76B58-2|BRINP3;REV__nc|ENSG00000198797|Q9C0B6-2|BRINP2 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 459.760758 917.506963 0.29284 0.00013464 0.054569 2.5089E-05 0.34741 0.00015973 459.7605924057998 125.16 0.63046 120.39 120.16 120.79 -4.7681 -0.033319 5.8528E-05 NaN 60.39 34 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2260700 + 51332 24128;19452 34079 34100 0.04490945457757789 VLVVAIIVRI 10 Unmodified _VLVVAIIVRI_ 0 0 0 REV__ENSG00000112486|ENST00000341935|CCR6 REV__ENSG00000112486|ENST00000341935|CCR6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7823486328125 2 547.886627 1093.7587 NaN NaN NaN NaN NaN NaN NaN 171.19 1 166.4 165.9 166.9 -4.7898 0 0 0 0.22588 1 34788 34788 0.45834 0 1 + 51333 15300 34080 34101 50242 50242 0.2155720860994279 VLVVDTVVP 9 Unmodified _VLVVDTVVP_ 0 0 0 ENST00000267339.6_1_13:111531406-111531613:-|nuORF ENST00000267339.6_1_13:111531406-111531613:-|nuORF ENST00000267339.6_1_13:111531406-111531613:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1595458984375 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 95.498 1 95.498 94.998 95.998 0 0 0 0 0.23508 1 18709 18709 1.1933 0 1 51334 8382 34081 34102 50243 50243 0.09188412734147278 VLVVILVIII 10 Unmodified _VLVVILVIII_ 0 0 0 REV__nc|ENSG00000124222|O14662-2|STX16 REV__nc|ENSG00000124222|O14662-2|STX16 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.768310546875 2 547.401579 1092.7886 0.27073 0.0001482 -0.85592 -0.00046853 -0.58519 -0.00032034 547.9021811231185 145.91 0.17557 141.23 141.15 141.33 -4.6868 5 4 2 0 0 0 0.91149 1 28948 28948 0 0 1 1113100 + 51335 15766 34082 34103 50244 50244 0.2459214755526773 VLVVKLLSILY 11 Unmodified _VLVVKLLSILY_ 0 0 0 ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1 ENSG00000172954|ENST00000379509|LCLAT1 ENSG00000172954|ENST00000379509|LCLAT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7552490234375 2 630.4205 1258.82645 NaN NaN NaN NaN NaN NaN NaN 49.921 1 46.922 46.422 47.422 -2.999 0 0 0 0.22632 1 9133 9133 0 0 1 51336 6256 34083 34104 50245 50245 0.20738613750108925 VLVWLIPG 8 Unmodified _VLVWLIPG_ 0 0 0 REV__tr|U7SNA6|U7SNA6_FUSNUBiopolymertransporterExbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01721PE=3SV=1 REV__tr|U7SNA6|U7SNA6_FUSNUBiopolymertransporterExbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01721PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.2491760253906 2 448.783839 895.553125 -0.0737 -3.3075E-05 0.22811 0.00010237 0.15441 6.9296E-05 448.7838718912234 44.947 0.5717 42.082 41.77 42.342 -2.8653 36 15 3 0 0 0 0.89951 1 8134 8134 0 0 1 6239900 + 51337 24975 34084 34105 50246 50246 0.10117055150521992 VLVYGNHQ 8 Unmodified _VLVYGNHQ_ 0 0 0 REV__ENSG00000170145|ENST00000304987|SIK2 REV__ENSG00000170145|ENST00000304987|SIK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2439270019531 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 108.25 1 103.93 103.43 104.43 -4.32 0 0 0 0.22684 1 21327 21327 1.7423 0 1 + 51338 18143 34085 34106 50247 50247 0.009566315832330474 VLWCLCSVY 9 Unmodified _VLWCLCSVY_ 0 0 0 ENSG00000151240|ENST00000280886|DIP2C;DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant ENSG00000151240|ENST00000280886|DIP2C ENSG00000151240|ENST00000280886|DIP2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7930297851562 2 543.261556 1084.50856 -0.034968 -1.8997E-05 0.32614 0.00017718 0.29117 0.00015818 543.2616040278101 82.604 0.69513 78.906 78.515 79.211 -3.6985 33 19 3 0 0 0 0.55758 1 15779 15779 18.135 2.2878 1 1976000 51339 4855 34086 34107 50248 50248 -0.030314600494875776 VLWHLAQL 8 Unmodified _VLWHLAQL_ 0 0 0 nc|ENSG00000254685|O14772-3|FPGT nc|ENSG00000254685|O14772-3|FPGT nc|ENSG00000254685|O14772-3|FPGT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2568054199219 2 490.28982 978.565087 NaN NaN NaN NaN NaN NaN NaN 137.9 1 133.06 132.56 133.56 -4.84 0 0 0 0.21022 1 26573 26573 17.087 5.9721 1 51340 12628 34087 34108 50249 50249 0.07494671893698523 VLWVRPVQ 8 Unmodified _VLWVRPVQ_ 0 0 0 REV__COL2A1|p.P917Lfs*111|2|0.33|ENSG00000139219|chr12:47978742-47978742|G/-|frameshift_variant REV__COL2A1|p.P917Lfs*111|2|0.33|ENSG00000139219|chr12:47978742-47978742|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 498.74462890625 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 12.483 1 11.354 10.854 11.854 -1.1293 0 0 0 0.2343 1 1533 1533 0.62683 0.21856 1 + 51341 13487 34088 34109 50250 50250 0.09366360785031702 VLYENPNLKGV 11 Unmodified _VLYENPNLKGV_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.757568359375 2 623.34552 1244.67649 0.99068 0.00061754 -0.32736 -0.00020406 0.66332 0.00041348 623.3451065097886 100.5 0.54856 96.336 96.117 96.666 -4.1594 26 15 2 0 0 0 0.69573 1 19778 19778 33.445 20.913 1 1465000 51342 899 34089 34110 50251 50251 0.06393641740305611 VLYENPNLKGV 11 Unmodified _VLYENPNLKGV_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.751953125 2 623.34552 1244.67649 0.52557 0.00032761 -0.53879 -0.00033585 -0.013212 -8.2355E-06 623.3453616640303 100.74 0.44585 96.447 96.223 96.669 -4.297 25 12 3 0 0 0 0.56045 1 19279 19279 38.615 26.083 1 2414300 51343 899 34089 34110 50252 50252 0.06393641740305611 VLYENPNLKGV 11 Unmodified _VLYENPNLKGV_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7586059570312 2 623.34552 1244.67649 0.51713 0.00032235 -0.18268 -0.00011387 0.33445 0.00020847 623.3454033615217 100.4 0.51109 96.408 96.142 96.653 -3.9895 24 14 2 0 0 0 0.82642 1 19303 19303 27.223 20.5 1 2021800 51344 899 34089 34110 50253 50253 0.06393641740305611 VLYSTKMS 8 Unmodified _VLYSTKMS_ 0 0 0 OR5P2|p.L126V|1|0.17|ENSG00000183303|chr11:7796567-7796567|G/C|missense_variant OR5P2|p.L126V|1|0.17|ENSG00000183303|chr11:7796567-7796567|G/C|missense_variant OR5P2|p.L126V|1|0.17|ENSG00000183303|chr11:7796567-7796567|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 179.89 1 174.98 174.48 175.48 -4.9114 0 0 0 0.2396 1 35899 35899 0.0082765 0 1 51345 12734 34090 34111 50254 50254 0.006916204142271454 VLYTLEIID 9 Unmodified _VLYTLEIID_ 0 0 0 ENSG00000188306|ENST00000340806|LRRIQ4 ENSG00000188306|ENST00000340806|LRRIQ4 ENSG00000188306|ENST00000340806|LRRIQ4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2066955566406 3 360.205869 1077.59578 NaN NaN NaN NaN NaN NaN NaN 120.97 1 120.97 120.47 121.47 0 0 0 0 0.19657 1 23846 23846 0.12781 0 1 51346 7160 34091 34112 50255 50255 0.060083606974330905 VMADVSSSSY 10 Unmodified _VMADVSSSSY_ 0 0 0 ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2 ENSG00000064932|ENST00000361757|SBNO2 ENSG00000064932|ENST00000361757|SBNO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6849975585938 2 523.228965 1044.44338 -0.40517 -0.000212 -2.3459 -0.0012275 -2.7511 -0.0014394 523.2277569200895 98.521 0.49356 94.252 94.052 94.545 -4.2692 24 13 2 0 0 0 0.86261 1 18843 18843 15.847 9.4931 1 2049800 51347 1345 34092 34113 50256 50256 -0.0770678304163539 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 507.18634033203125 2 507.312438 1012.61032 0.2018 0.00010238 0.052332 2.6549E-05 0.25413 0.00012892 507.3123225253716 140.54 0.86919 140.54 140.09 140.96 0 57 24 3 0 0 0 0.068672 2 27946 27946;28046 54.068 0 1 20581000 51348 7670 34093 34114 50257;50258 50257 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 508.3250732421875 2 507.312438 1012.61032 -0.006918 -3.5096E-06 -0.017975 -9.1188E-06 -0.024893 -1.2628E-05 507.3124205656454 144.76 0.90932 140.09 139.6 140.51 -4.6694 65 25 3 0 0 0 0.12935 1 28663 28663 54.068 0 1 32755000 51349 7670 34093 34114 50259 50259 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 508.2996520996094 2 507.312438 1012.61032 -0.24714 -0.00012538 -0.013804 -7.0032E-06 -0.26094 -0.00013238 507.31255535907883 145.15 0.86127 140.09 139.73 140.59 -5.0671 64 24 4 0 0 0 0.10537 1 28036 28036 54.068 0 1 27330000 51350 7670 34093 34114 50260 50260 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 506.7981262207031 2 507.312438 1012.61032 -0.27363 -0.00013882 0.20899 0.00010603 -0.06464 -3.2793E-05 507.3125761426415 140.07 1.2931 135.12 134.31 135.6 -4.952 86 36 3 0 0 0 0.12755 1 26892 26892 26.995 0 1 13054000 51351 7670 34093 34114 50261 50261 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 508.3122253417969 2 507.312438 1012.61032 0.22486 0.00011408 -0.13445 -6.821E-05 0.090409 4.5866E-05 507.31229771867316 145.04 0.96721 140.1 139.62 140.59 -4.9445 61 27 3 0 0 0 0.12935 2 28035 28035;28067 54.068 0 1 14175000 51352 7670 34093 34114 50262;50263 50262 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 507.312438 1012.61032 0.1784 9.0506E-05 -0.36237 -0.00018383 -0.18396 -9.3327E-05 507.312375295262 139.89 1.1227 135.05 134.39 135.51 -4.8492 -0.026583 -0.00034765 NaN 26.995 79 31 3 NaN NaN NaN NaN 0 NaN NaN 0 6485100 51353 7670 34093 34114 0.10452154364600119 VMDDGTNEY 9 Unmodified _VMDDGTNEY_ 0 0 0 nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-3|PCNX1 nc|ENSG00000100731|Q96RV3-3|PCNX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.26513671875 2 522.202947 1042.39134 0.32476 0.00016959 0.12194 6.3679E-05 0.4467 0.00023327 522.2029764298695 39.183 1.1136 39.183 38.638 39.752 0 51 31 2 0 0 0 0.58699 1 7262 7262 32.305 3.8186 1 2414400 51354 2010 34094 34115 50264 50264 -0.1281594645538462 VMDDGTNEY 9 Unmodified _VMDDGTNEY_ 0 0 0 nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-3|PCNX1 nc|ENSG00000100731|Q96RV3-3|PCNX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2738647460938 2 522.202947 1042.39134 -0.38128 -0.00019911 0.43554 0.00022744 0.054258 2.8334E-05 522.2031635819101 41.861 1.2136 39.227 38.71 39.924 -2.6348 82 34 3 0 0 0 0.096847 1 7835 7835 71.134 13.662 1 6346200 51355 2010 34094 34115 50265 50265 -0.1281594645538462 VMDDGTNEY 9 Unmodified _VMDDGTNEY_ 0 0 0 nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-3|PCNX1 nc|ENSG00000100731|Q96RV3-3|PCNX1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.275146484375 2 522.202947 1042.39134 0.077866 4.0662E-05 -0.094309 -4.9248E-05 -0.016443 -8.5866E-06 522.2029257336333 42.047 1.7466 39.441 38.701 40.448 -2.606 92 49 3 0 0 0 0.13686 1 7540 7540 61.357 29.052 1 2477800 51356 2010 34094 34115 50266 50266 -0.1281594645538462 VMDEFEDVNF 10 Unmodified _VMDEFEDVNF_ 0 0 0 REV__ENST00000431607.1_1_9:119942983-119943337:-|nuORF REV__ENST00000431607.1_1_9:119942983-119943337:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.767333984375 2 622.760629 1243.5067 NaN NaN NaN NaN NaN NaN NaN 70.502 1 67.253 66.753 67.753 -3.2492 0 0 0 0.22588 1 13720 13720 6.2058 0.9089 1 + 51357 21624 34095 34116 50267 50267 -0.10530842324419609 VMDRVFLVC 9 Unmodified _VMDRVFLVC_ 0 0 0 REV__ENST00000282728.9_1_10:94455073-94455139:+|nuORF REV__ENST00000282728.9_1_10:94455073-94455139:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2794799804688 2 541.28028 1080.54601 NaN NaN NaN NaN NaN NaN NaN 132.98 1 128.13 127.63 128.63 -4.8527 0 0 0 0.19684 1 25545 25545 0.40827 0.3444 1 + 51358 20318 34096 34117 50268 50268 0.008956312161444657 VMDSDEDDDY 10 Unmodified _VMDSDEDDDY_ 0 0 0 ENSG00000105185|ENST00000590247|PDCD5 ENSG00000105185|ENST00000590247|PDCD5 ENSG00000105185|ENST00000590247|PDCD5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2797241210938 2 602.203341 1202.39213 NaN NaN NaN NaN NaN NaN NaN 87.015 1 87.015 86.515 87.515 0 0 0 0 0.22588 1 16982 16982 1.8442 0.51471 1 51359 2282 34097 34118 50269 50269 -0.200971965969984 VMDVKPVDY 9 Unmodified _VMDVKPVDY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2650146484375 2 533.267893 1064.52123 NaN NaN NaN NaN NaN NaN NaN 81.097 1 81.097 80.597 81.597 0 0 0 0 0.1736 1 15791 15791 27.223 0.95509 1 51360 3722 34098 34119 50270 50270 -0.008447253855820236 VMDVKPVDY 9 Unmodified _VMDVKPVDY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2670288085938 2 533.267893 1064.52123 NaN NaN NaN NaN NaN NaN NaN 113.13 1 113.13 112.63 113.63 0 0 0 0 0.19691 1 22244 22244 0.40827 0 1 51361 3722 34098 34119 50271 50271 -0.008447253855820236 VMDVKPVDY 9 Unmodified _VMDVKPVDY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2675170898438 2 533.267893 1064.52123 0.04002 2.1341E-05 -0.31756 -0.00016934 -0.27754 -0.000148 533.2676532457673 84.952 0.58517 81.288 81.057 81.642 -3.6641 35 16 3 0 0 0 0.13707 2 16644 16594;16644 46.022 18.394 1 2104300 51362 3722 34098 34119 50272;50273 50273 -0.008447253855820236 VMDVKPVDY 9 Unmodified _VMDVKPVDY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2678833007812 2 533.267893 1064.52123 0.58404 0.00031145 -1.0305 -0.00054953 -0.44646 -0.00023808 533.2672019262487 85.205 0.55345 81.296 81.049 81.602 -3.9093 23 15 2 0 0 0 0.1629 1 16237 16237 42.312 20.776 1 3079400 51363 3722 34098 34119 50274 50274 -0.008447253855820236 VMDVKPVDY 9 Unmodified _VMDVKPVDY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2871704101562 2 533.267893 1064.52123 0.06392 3.4087E-05 -0.095629 -5.0996E-05 -0.031708 -1.6909E-05 533.2677453467214 84.947 0.5145 81.235 81.015 81.529 -3.7117 28 14 3 0 0 0 0.41444 2 16245 16245;16267 24.882 8.7325 1 2141600 51364 3722 34098 34119 50275;50276 50275 -0.008447253855820236 VMDVNSSKY 9 Unmodified _VMDVNSSKY_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2723999023438 2 521.747324 1041.4801 -0.24289 -0.00012673 0.76285 0.00039801 0.51996 0.00027129 521.7477362840903 45.722 0.91589 42.881 42.221 43.137 -2.8409 43 25 3 0 0 0 0.81703 1 8667 8667 6.2058 0 1 5480800 51365 3680 34099 34120 50277 50277 -0.038984864250551254 VMDVNSSKY 9 Unmodified _VMDVNSSKY_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2734375 2 521.747324 1041.4801 -0.73781 -0.00038495 1.033 0.00053897 0.29521 0.00015402 521.7480171679766 45.812 0.47947 42.946 42.693 43.172 -2.8653 30 13 3 0 0 0 0.67852 1 8341 8341 23.79 19.034 1 6395900 51366 3680 34099 34120 50278 50278 -0.038984864250551254 VMDVNSSKY 9 Unmodified _VMDVNSSKY_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2730712890625 2 521.747324 1041.4801 -0.052462 -2.7372E-05 0.29768 0.00015531 0.24522 0.00012794 521.7476395157848 45.78 0.45444 42.913 42.677 43.131 -2.8666 29 12 4 0 0 0 0.73481 1 8346 8346 14.405 4.3315 1 5689200 51367 3680 34099 34120 50279 50279 -0.038984864250551254 VMEKRSFKV 9 Unmodified _VMEKRSFKV_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES;HMCES|p.T234Sfs*32|1|0.17|ENSG00000183624|chr3:129302014-129302015|-/G|frameshift_variant;HMCES|p.K276Rfs*59|1|0.32|ENSG00000183624|chr3:129302137-129302137|A/-|frameshift_variant ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21435546875 3 375.214593 1122.62195 -0.15202 -5.7041E-05 0.060175 2.2579E-05 -0.091847 -3.4462E-05 375.21454596891044 32.569 0.45176 32.569 32.363 32.815 0 31 12 3 0 0 0 0.039965 2 5941 5941;5945 59.368 39.742 1 2973300 51368 6858 34100 34121 50280;50281 50280 0.06554351387921997 VMEKRSFKV 9 Unmodified _VMEKRSFKV_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES;HMCES|p.T234Sfs*32|1|0.17|ENSG00000183624|chr3:129302014-129302015|-/G|frameshift_variant;HMCES|p.K276Rfs*59|1|0.32|ENSG00000183624|chr3:129302137-129302137|A/-|frameshift_variant ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.5380554199219 3 375.214593 1122.62195 -0.45763 -0.00017171 0.50067 0.00018786 0.043032 1.6146E-05 375.2147135533172 34.911 0.49059 32.518 32.249 32.74 -2.3938 34 13 3 0 0 0 0.037776 2 6418 6418;6438 76.825 46.121 1 3096500 51369 6858 34100 34121 50282;50283 50282 0.06554351387921997 VMEKRSFKV 9 Unmodified _VMEKRSFKV_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES;HMCES|p.T234Sfs*32|1|0.17|ENSG00000183624|chr3:129302014-129302015|-/G|frameshift_variant;HMCES|p.K276Rfs*59|1|0.32|ENSG00000183624|chr3:129302137-129302137|A/-|frameshift_variant ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2145080566406 3 375.214593 1122.62195 0.18117 6.7977E-05 -0.26262 -9.8539E-05 -0.081452 -3.0562E-05 375.21445113160513 34.805 0.55738 32.552 32.254 32.811 -2.2527 39 15 4 0 0 0 0.18865 1 6114 6114 38.615 11.392 1 3855600 51370 6858 34100 34121 50284 50284 0.06554351387921997 VMEKRSFKV 9 Unmodified _VMEKRSFKV_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES;HMCES|p.T234Sfs*32|1|0.17|ENSG00000183624|chr3:129302014-129302015|-/G|frameshift_variant;HMCES|p.K276Rfs*59|1|0.32|ENSG00000183624|chr3:129302137-129302137|A/-|frameshift_variant ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2145690917969 3 375.214593 1122.62195 -0.33958 -0.00012741 0.21944 8.2336E-05 -0.12014 -4.5078E-05 375.2146730353141 34.775 0.48776 32.499 32.239 32.726 -2.2766 32 13 3 0 0 0 0.25976 2 6118 6118;6122 32.037 12.676 1 2884400 51371 6858 34100 34121 50285;50286 50285 0.06554351387921997 VMFGGKQVVV 10 Unmodified _VMFGGKQVVV_ 0 0 0 ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000168710|O43865-2|AHCYL1 ENSG00000168710|ENST00000369799|AHCYL1 ENSG00000168710|ENST00000369799|AHCYL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.284423828125 2 532.30207 1062.58959 0.22148 0.00011789 -0.1698 -9.0384E-05 0.051679 2.7509E-05 532.3019051864338 117.37 0.98446 112.88 112.49 113.48 -4.486 61 27 3 0 0 0 0.20847 1 23172 23172 43.858 29.952 1 15182000 51372 5928 34101 34122 50287 50287 0.06079563984917513 VMFGGKQVVV 10 Unmodified _VMFGGKQVVV_ 0 0 0 ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000168710|O43865-2|AHCYL1 ENSG00000168710|ENST00000369799|AHCYL1 ENSG00000168710|ENST00000369799|AHCYL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28564453125 2 532.30207 1062.58959 0.76134 0.00040526 -0.81955 -0.00043625 -0.058216 -3.0988E-05 532.3016370448438 117.48 0.97897 112.87 112.44 113.42 -4.6106 72 27 4 0 0 0 0.23765 1 22571 22571 41.84 27.934 1 14667000 51373 5928 34101 34122 50288 50288 0.06079563984917513 VMFGGKQVVV 10 Unmodified _VMFGGKQVVV_ 0 0 0 ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000168710|O43865-2|AHCYL1 ENSG00000168710|ENST00000369799|AHCYL1 ENSG00000168710|ENST00000369799|AHCYL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2850341796875 2 532.30207 1062.58959 0.51005 0.0002715 -0.55371 -0.00029474 -0.043665 -2.3243E-05 532.3017927962308 117.29 0.9637 112.94 112.52 113.48 -4.3585 67 26 3 0 0 0 0.20847 2 22561 22561;22618 43.858 25.723 1 10294000 51374 5928 34101 34122 50289;50290 50289 0.06079563984917513 VMFGGKQVVV 10 Unmodified _VMFGGKQVVV_ 0 0 0 ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000168710|O43865-2|AHCYL1 ENSG00000168710|ENST00000369799|AHCYL1 ENSG00000168710|ENST00000369799|AHCYL1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 532.30207 1062.58959 0.074133 3.9461E-05 -0.10586 -5.635E-05 -0.031729 -1.6889E-05 532.3019750986549 113.25 0.82545 113.25 112.8 113.62 0 0.2667 0.00032022 NaN 43.858 52 23 3 NaN NaN NaN NaN 0 NaN NaN 0 9435500 51375 5928 34101 34122 0.06079563984917513 VMFKEPVEV 9 Oxidation (M) _VM(Oxidation (M))FKEPVEV_ VM(1)FKEPVEV VM(50)FKEPVEV 0 0 1 ENSG00000133243|ENST00000255608|BTBD2;nc|ENSG00000133243|Q9BX70-2|BTBD2;ENST00000589685.2_1_19:1986489-1990887:-|nuORF ENSG00000133243|ENST00000255608|BTBD2 ENSG00000133243|ENST00000255608|BTBD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7842407226562 2 547.283543 1092.55253 0.56218 0.00030767 -0.20313 -0.00011117 0.35905 0.0001965 547.2834008912305 99.285 0.52402 99.285 99.024 99.548 0 22 14 2 0 0 0 0.11836 1 19455 19455 49.527 17.222 1 2933800 51376 3792 34102 34123 50291 50291 62 0.009958476484825951 VMFKEPVEV 9 Oxidation (M) _VM(Oxidation (M))FKEPVEV_ VM(1)FKEPVEV VM(40)FKEPVEV 0 0 1 ENSG00000133243|ENST00000255608|BTBD2;nc|ENSG00000133243|Q9BX70-2|BTBD2;ENST00000589685.2_1_19:1986489-1990887:-|nuORF ENSG00000133243|ENST00000255608|BTBD2 ENSG00000133243|ENST00000255608|BTBD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7858276367188 2 547.283543 1092.55253 0.60936 0.00033349 0.63733 0.0003488 1.2467 0.00068229 547.7856758923742 99.767 0.65855 99.767 99.41 100.07 0 42 18 3 0 0 0 0.17734 1 19544 19544 40.239 14.84 1 2491200 51377 3792 34102 34123 50292 50292 62 0.009958476484825951 VMFKEPVEV 9 Oxidation (M) _VM(Oxidation (M))FKEPVEV_ VM(1)FKEPVEV VM(42)FKEPVEV 0 0 1 ENSG00000133243|ENST00000255608|BTBD2;nc|ENSG00000133243|Q9BX70-2|BTBD2;ENST00000589685.2_1_19:1986489-1990887:-|nuORF ENSG00000133243|ENST00000255608|BTBD2 ENSG00000133243|ENST00000255608|BTBD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7723388671875 2 547.283543 1092.55253 0.10396 5.6898E-05 0.37358 0.00020445 0.47754 0.00026135 547.2835954710249 103.18 0.53889 98.993 98.771 99.31 -4.1861 28 15 3 0 0 0 0.1629 1 20287 20287 42.312 15.429 1 1735800 51378 3792 34102 34123 50293 50293 62 0.009958476484825951 VMFKEPVEV 9 Oxidation (M) _VM(Oxidation (M))FKEPVEV_ VM(1)FKEPVEV VM(42)FKEPVEV 0 0 1 ENSG00000133243|ENST00000255608|BTBD2;nc|ENSG00000133243|Q9BX70-2|BTBD2;ENST00000589685.2_1_19:1986489-1990887:-|nuORF ENSG00000133243|ENST00000255608|BTBD2 ENSG00000133243|ENST00000255608|BTBD2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7716064453125 2 547.283543 1092.55253 0.66341 0.00036308 -0.19907 -0.00010895 0.46435 0.00025413 547.283367480526 103.06 0.5061 99.04 98.77 99.277 -4.0212 28 13 3 0 0 0 0.46261 1 19839 19839 42.312 15.429 1 2784600 51379 3792 34102 34123 50294 50294 62 0.009958476484825951 VMFPLEQRI 9 Unmodified _VMFPLEQRI_ 0 0 0 REV__ADSL|p.A381V|1|0.53|ENSG00000239900|chr22:40364316-40364316|C/T|missense_variant REV__ADSL|p.A381V|1|0.53|ENSG00000239900|chr22:40364316-40364316|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 378.2550048828125 3 378.21096 1131.61105 NaN NaN NaN NaN NaN NaN NaN 176.94 1 172.06 171.56 172.56 -4.8739 0 0 0 0.23508 1 35206 35206 1.1933 0 1 + 51380 12972 34103 34124 50295 50295 0.05050949013616446 VMFRYDYTTI 10 Unmodified _VMFRYDYTTI_ 0 0 0 REV__NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant REV__NYNRIN|p.A1288Rfs*152|1|0.45|ENSG00000205978|chr14:24415606-24415606|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2156066894531 3 436.88128 1307.62201 NaN NaN NaN NaN NaN NaN NaN 101.79 1 97.601 97.101 98.101 -4.1861 0 0 0 0.22588 1 20001 20001 6.1918 2.0752 1 + 51381 24394 34104 34125 50296 50296 -0.01949693402775665 VMGLLRNI 8 Unmodified _VMGLLRNI_ 0 0 0 REV__ENSG00000108773|ENST00000225916|KAT2A REV__ENSG00000108773|ENST00000225916|KAT2A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23876953125 2 458.275855 914.537157 NaN NaN NaN NaN NaN NaN NaN 125.78 1 121.01 120.51 121.51 -4.7681 0 0 0 0.21486 1 24139 24139 10.183 1.5901 1 + 51382 15136 34105 34126 50297 50297 0.07647025641961136 VMHLFSEV 8 Unmodified _VMHLFSEV_ 0 0 0 REV__EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant REV__EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2442932128906 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 55.726 1 52.571 52.071 53.071 -3.1551 0 0 0 0.2343 1 10353 10353 0.62683 0.21856 1 + 51383 13789 34106 34127 50298 50298 -0.007929598659302428 VMHLREVLK 9 Unmodified _VMHLREVLK_ 0 0 0 REV__ENSG00000153147|ENST00000283131|SMARCA5 REV__ENSG00000153147|ENST00000283131|SMARCA5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.22265625 3 375.558471 1123.65358 -0.53738 -0.00020182 -2.9892 -0.0011226 -3.5266 -0.0013244 375.55764119112763 60.243 0.2111 57.02 56.96 57.171 -3.2237 6 5 2 0 0 0 0.87497 1 11276 11276 0.96228 0 1 528890 + 51384 17136 34107 34128 50299 50299 0.0967034414184127 VMHRIYFRMRR 11 Unmodified _VMHRIYFRMRR_ 0 0 0 REV__CACNA1A|p.R481H|1|0.07|ENSG00000141837|chr19:13317225-13317225|C/T|missense_variant REV__CACNA1A|p.R481H|1|0.07|ENSG00000141837|chr19:13317225-13317225|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2650756835938 3 522.28698 1563.83911 NaN NaN NaN NaN NaN NaN NaN 140.26 1 135.41 134.91 135.91 -4.8492 0 0 0 0.22632 1 27044 27044 0.50596 0 1 + 51385 13233 34108 34129 50300 50300 0.0797442338964629 VMIGGEPYTL 10 Unmodified _VMIGGEPYTL_ 0 0 0 nc|ENSG00000289694|P60953-1|CDC42;ENSG00000070831|ENST00000656825|CDC42 nc|ENSG00000289694|P60953-1|CDC42 nc|ENSG00000289694|P60953-1|CDC42 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2769165039062 2 540.275718 1078.53688 0.28707 0.0001551 -1.3468 -0.00072762 -1.0597 -0.00057252 540.2755263053381 147.36 0.48326 142.68 142.44 142.92 -4.6868 27 13 4 0 0 0 0.48196 1 29254 29254 1.0651 0 1 3863100 51386 1440 34109 34130 50301 50301 0.0007556113146165444 VMIKHIKENGL 11 Unmodified _VMIKHIKENGL_ 0 0 0 REV__ENST00000507606.2_1_7:135359502-135359658:+|nuORF REV__ENST00000507606.2_1_7:135359502-135359658:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 641.3126220703125 2 641.371015 1280.72748 NaN NaN NaN NaN NaN NaN NaN 173.86 1 173.86 173.36 174.36 0 0 0 0 0.22632 1 35973 35973 0.2986 0 1 + 51387 22502 34110 34131 50302 50302 0.09834267513542727 VMKGNHSR 8 Unmodified _VMKGNHSR_ 0 0 0 ENSG00000103544|ENST00000417362|VPS35L;nc|ENSG00000103544|Q7Z3J2-2|VPS35L;ENST00000544275.1_1_16:19659174-19663786:+|nuORF ENSG00000103544|ENST00000417362|VPS35L ENSG00000103544|ENST00000417362|VPS35L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.169921875 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 123.35 1 123.35 122.85 123.85 0 0 0 0 0.21486 1 24313 24313 0.40072 0 1 51388 2196 34111 34132 50303 50303 0.004232097999192774 VMKGNHSR 8 Unmodified _VMKGNHSR_ 0 0 0 ENSG00000103544|ENST00000417362|VPS35L;nc|ENSG00000103544|Q7Z3J2-2|VPS35L;ENST00000544275.1_1_16:19659174-19663786:+|nuORF ENSG00000103544|ENST00000417362|VPS35L ENSG00000103544|ENST00000417362|VPS35L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16461181640625 3 310.164233 927.470869 NaN NaN NaN NaN NaN NaN NaN 119.01 1 114.4 113.9 114.9 -4.6106 0 0 0 0.21486 1 22836 22836 0.40072 0 1 51389 2196 34111 34132 50304 50304 0.004232097999192774 VMKMFALRQ 9 Unmodified _VMKMFALRQ_ 0 0 0 ENSG00000185313|ENST00000449082|SCN10A;SCN10A|p.F1805Lfs*8|1|0.1|ENSG00000185313|chr3:38697805-38697805|A/-|frameshift_variant ENSG00000185313|ENST00000449082|SCN10A ENSG00000185313|ENST00000449082|SCN10A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 376.5219421386719 3 375.208673 1122.60419 -0.11602 -4.3531E-05 0.47948 0.00017991 0.36346 0.00013637 375.2087880083219 19.406 0.32446 18.01 17.848 18.173 -1.3966 22 8 4 0 0 0 0.64764 1 3210 3210 0.96228 0 1 4033500 51390 6981 34112 34133 50305 50305 0.0477931286141029 VMLDCNKTY 9 Unmodified _VMLDCNKTY_ 0 0 0 REV__ENSG00000174607|ENST00000310836|UGT8 REV__ENSG00000174607|ENST00000310836|UGT8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7732543945312 2 543.751553 1085.48855 0.33929 0.00018449 -1.9687 -0.0010705 -1.6294 -0.00088598 544.2529482003408 148.4 0.17554 148.4 148.29 148.47 0 7 4 2 0 0 0 0.62102 1 29706 29706 11.64 0 1 1693200 + 51391 18423 34113 34134 50306 50306 -0.05077255780088308 VMLDCNKTY 9 Unmodified _VMLDCNKTY_ 0 0 0 REV__ENSG00000174607|ENST00000310836|UGT8 REV__ENSG00000174607|ENST00000310836|UGT8 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.751553 1085.48855 0.33929 0.00018449 -1.9687 -0.0010705 -1.6294 -0.00088598 544.2529482003408 148.4 0.17554 148.4 148.29 148.47 0 0 0 NaN 11.64 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1693200 + 51392 18423 34113 34134 -0.05077255780088308 VMLGGRNIKV 10 Unmodified _VMLGGRNIKV_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7774047851562 2 543.826243 1085.63793 0.44021 0.0002394 -0.57333 -0.00031179 -0.13312 -7.2394E-05 543.8259750237945 84.225 0.73332 84.225 83.823 84.556 0 52 20 3 0 0 0 0.086838 1 16364 16364 31.268 29.341 1 15297000 51393 6651 34114 34135 50307 50307 0.09854057624806956 VMLGGRNIKV 10 Unmodified _VMLGGRNIKV_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.782470703125 2 543.826243 1085.63793 0.15056 8.1878E-05 -0.28232 -0.00015353 -0.13176 -7.1652E-05 543.8261471929433 87.366 0.89758 83.639 83.149 84.047 -3.727 70 24 4 0 0 0 0.086838 2 17025 17025;17134 44.392 39.676 1 14165000 51394 6651 34114 34135 50308;50309 50308 0.09854057624806956 VMLGGRNIKV 10 Unmodified _VMLGGRNIKV_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.8856506347656 3 362.886588 1085.63793 0.32642 0.00011845 -0.47862 -0.00017369 -0.1522 -5.5233E-05 362.88643248821745 87.626 1.0636 83.631 83.088 84.151 -3.9953 88 29 4 0 0 0 0.0053224 2 16679 16630;16679 77.813 48.731 1 33800000 51395 6651 34114 34135 50310;50311 50311 0.09854057624806956 VMLGGRNIKV 10 Unmodified _VMLGGRNIKV_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7817993164062 2 543.826243 1085.63793 0.34169 0.00018582 -0.42055 -0.00022871 -0.078862 -4.2887E-05 543.8261069907583 87.583 0.8862 83.588 83.124 84.01 -3.9953 66 24 4 0 0 0 0.046341 5 16692 16643;16692;16730;16732;16740 67.081 59.604 1 10953000 51396 6651 34114 34135 50312;50313;50314;50315;50316 50313 0.09854057624806956 VMLGGRNIKV 10 Unmodified _VMLGGRNIKV_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7765502929688 2 543.826243 1085.63793 0.22831 0.00012416 -0.4137 -0.00022498 -0.18538 -0.00010082 543.8261086599699 87.413 0.84502 83.684 83.295 84.14 -3.7289 69 23 4 0 0 0 0.11477 1 16700 16700 92.491 58.389 1 15047000 51397 6651 34114 34135 50317 50317 0.09854057624806956 VMLGGRNIKV 10 Unmodified _VMLGGRNIKV_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 362.886588 1085.63793 -0.32604 -0.00011832 0.18273 6.631E-05 -0.14331 -5.2006E-05 362.8866726583937 87.307 0.96747 83.58 83.079 84.047 -3.727 -0.057235 0.00017066 NaN 77.813 83 26 4 NaN NaN NaN NaN 0 NaN NaN 0 44549000 51398 6651 34114 34135 0.09854057624806956 VMLGGRNIKV 10 Unmodified _VMLGGRNIKV_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 362.886588 1085.63793 -0.54302 -0.00019706 0.32694 0.00011864 -0.21608 -7.8413E-05 362.8867372638746 87.436 1.0856 83.7 83.22 84.306 -3.7359 0.063063 0.00032766 NaN 77.813 86 30 4 NaN NaN NaN NaN 0 NaN NaN 0 38369000 51399 6651 34114 34135 0.09854057624806956 VMLKLKSL 8 Unmodified _VMLKLKSL_ 0 0 0 ENST00000510461.5_1_5:131066679-131080342:-|nuORF ENST00000510461.5_1_5:131066679-131080342:-|nuORF ENST00000510461.5_1_5:131066679-131080342:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.22113037109375 3 311.205146 930.59361 NaN NaN NaN NaN NaN NaN NaN 119.22 1 119.22 118.72 119.72 0 0 0 0 0.21486 1 23489 23489 0.40072 0 1 51400 10743 34115 34136 50318 50318 0.12553653478619253 VMLKLKSL 8 Unmodified _VMLKLKSL_ 0 0 0 ENST00000510461.5_1_5:131066679-131080342:-|nuORF ENST00000510461.5_1_5:131066679-131080342:-|nuORF ENST00000510461.5_1_5:131066679-131080342:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2322082519531 3 311.205146 930.59361 NaN NaN NaN NaN NaN NaN NaN 119.45 1 119.45 118.95 119.95 0 0 0 0 0.21486 1 23536 23536 0.40072 0 1 51401 10743 34115 34136 50319 50319 0.12553653478619253 VMLKLKSL 8 Unmodified _VMLKLKSL_ 0 0 0 ENST00000510461.5_1_5:131066679-131080342:-|nuORF ENST00000510461.5_1_5:131066679-131080342:-|nuORF ENST00000510461.5_1_5:131066679-131080342:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2330322265625 3 311.205146 930.59361 NaN NaN NaN NaN NaN NaN NaN 123.85 1 119.28 118.78 119.78 -4.5757 0 0 0 0.21486 1 24418 24418 0.40072 0 1 51402 10743 34115 34136 50320 50320 0.12553653478619253 VMLVAMQFR 9 Unmodified _VMLVAMQFR_ 0 0 0 REV__ENST00000491112.1_1_1:185269520-185270317:-|nuORF REV__ENST00000491112.1_1_1:185269520-185270317:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7721557617188 2 547.796097 1093.57764 NaN NaN NaN NaN NaN NaN NaN 119.17 1 114.53 114.03 115.03 -4.645 0 0 0 0.19657 1 22870 22870 4.897 1.0207 1 + 51403 22309 34116 34137 50321 50321 0.034596239700704245 VMMILMILD 9 Unmodified _VMMILMILD_ 0 0 0 REV__HCN1|p.T196Yfs*20|1|0.06|ENSG00000164588|chr5:45645448-45645449|-/GGATTATA|frameshift_variant REV__HCN1|p.T196Yfs*20|1|0.06|ENSG00000164588|chr5:45645448-45645449|-/GGATTATA|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016296386719 3 360.195154 1077.56363 -0.27314 -9.8384E-05 0.4881 0.00017581 0.21496 7.7429E-05 360.1953530437409 66.243 0.76523 63.196 62.843 63.608 -3.047 49 21 4 0 0 0 0.67174 1 12908 12908 8.1555 0.8663 1 4558700 + 51404 17692 34117 34138 50322 50322 0.027952104267569666 VMMILNMSR 9 Unmodified _VMMILNMSR_ 0 0 0 ENST00000374212.4_1_9:116024667-116024982:+|nuORF ENST00000374212.4_1_9:116024667-116024982:+|nuORF ENST00000374212.4_1_9:116024667-116024982:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7813720703125 2 547.77959 1093.54463 NaN NaN NaN NaN NaN NaN NaN 80.123 1 76.612 76.112 77.112 -3.5102 0 0 0 0.12107 1 15647 15647 29.082 24.366 1 51405 9214 34118 34139 50323 50323 0.0015967385570547776 VMNIKVGI 8 Unmodified _VMNIKVGI_ 0 0 0 ENST00000361464.7_1_10:103544260-103544341:-|nuORF ENST00000361464.7_1_10:103544260-103544341:-|nuORF ENST00000361464.7_1_10:103544260-103544341:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.23284912109375 2 437.264956 872.515359 NaN NaN NaN NaN NaN NaN NaN 108.01 1 108.01 107.51 108.51 0 0 0 0 0.21486 1 21240 21240 6.3541 0 1 51406 9025 34119 34140 50324 50324 0.0740022089340755 VMNVGKHSTA 10 Unmodified _VMNVGKHSTA_ 0 0 0 ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.268310546875 2 522.268758 1042.52296 NaN NaN NaN NaN NaN NaN NaN 116.74 1 112.16 111.66 112.66 -4.5815 0 0 0 0.22323 1 22402 22402 24.021 6.9077 1 51407 26633 34120 34141 50325 50325 0.0034032842304441147 VMNVGKHSTA 10 Unmodified _VMNVGKHSTA_ 0 0 0 ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant ZNF624|p.K498Nfs*74|1|0.49|ENSG00000197566|chr17:16623392-16623392|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.267578125 2 522.268758 1042.52296 NaN NaN NaN NaN NaN NaN NaN 116.66 1 112.3 111.8 112.8 -4.3585 0 0 0 0.20365 1 22456 22456 27.629 2.2295 1 51408 26633 34120 34141 50326 50326 0.0034032842304441147 VMPALEAAQ 9 Unmodified _VMPALEAAQ_ 0 0 0 ENSG00000110697|ENST00000356404|PITPNM1 ENSG00000110697|ENST00000356404|PITPNM1 ENSG00000110697|ENST00000356404|PITPNM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24176025390625 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 60.815 1 60.815 60.315 61.315 0 0 0 0 0.22621 1 11666 11666 15.847 2.3393 1 51409 2581 34121 34142 50327 50327 0.0017073627144554848 VMPLDMAILEI 11 Unmodified _VMPLDMAILEI_ 0 0 0 REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7670288085938 2 622.835085 1243.65562 NaN NaN NaN NaN NaN NaN NaN 10.213 1 9.3903 8.8903 9.8903 -0.82262 0 0 0 0.23698 1 1257 1257 0 0 1 + 51410 19286 34122 34143 50328 50328 0.04353592044822108 VMPWSHTMV 9 Unmodified _VMPWSHTMV_ 0 0 0 REV__sp|Q6RJQ3|UL141_HCMVMProteinUL141OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL141PE=1SV=2 REV__sp|Q6RJQ3|UL141_HCMVMProteinUL141OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL141PE=1SV=2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7808227539062 2 544.256805 1086.49906 0.020926 1.1389E-05 -0.69805 -0.00037992 -0.67712 -0.00036853 544.2564245777797 62.34 0.54971 62.34 62.073 62.622 0 39 15 3 0 0 0 0.72864 1 11958 11958 11.64 0 1 5285200 + 51411 24720 34123 34144 50329 50329 -0.04073228335005297 VMQPDGIAV 9 Unmodified _VMQPDGIAV_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2415771484375 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 63.729 1 60.313 59.813 60.813 -3.4158 0 0 0 0.21469 1 11910 11910 19.257 0 1 51412 1627 34124 34145 50330 50330 0.0017073627145691717 VMRMKWWLFWD 11 Unmodified _VMRMKWWLFWD_ 0 0 0 ENST00000557925.1_1_19:8315741-8320784:+|nuORF ENST00000557925.1_1_19:8315741-8320784:+|nuORF ENST00000557925.1_1_19:8315741-8320784:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2681884765625 3 533.26507 1596.77338 NaN NaN NaN NaN NaN NaN NaN 42.845 1 40.194 39.694 40.694 -2.651 0 0 0 0.22632 1 7722 7722 0.50596 0.47975 1 51413 11259 34125 34146 50331 50331 -0.001134105759092563 VMSPVKRRN 9 Unmodified _VMSPVKRRN_ 0 0 0 GBA2|p.A583S|1|0.2|ENSG00000070610|chr9:35739050-35739050|C/A|missense_variant GBA2|p.A583S|1|0.2|ENSG00000070610|chr9:35739050-35739050|C/A|missense_variant GBA2|p.A583S|1|0.2|ENSG00000070610|chr9:35739050-35739050|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.79052734375 2 543.813667 1085.61278 NaN NaN NaN NaN NaN NaN NaN 66.984 1 63.487 62.987 63.987 -3.4965 0 0 0 0.23508 1 12562 12562 7.2892 0.56607 1 51414 11840 34126 34147 50332 50332 0.07340002822252245 VMTPELAGV 9 Unmodified _VMTPELAGV_ 0 0 0 ENSG00000065135|ENST00000369851|GNAI3 ENSG00000065135|ENST00000369851|GNAI3 ENSG00000065135|ENST00000369851|GNAI3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2393798828125 2 458.744053 915.473554 0.21323 9.7819E-05 0.1222 5.6058E-05 0.33543 0.00015388 458.7440127590497 125.47 0.6596 120.82 120.42 121.08 -4.6495 27 18 2 0 0 0 0.10777 1 24112 24112 57.471 34.323 1 1136800 51415 1352 34127 34148 50333 50333 0.012436204142204588 VMTPELAGV 9 Unmodified _VMTPELAGV_ 0 0 0 ENSG00000065135|ENST00000369851|GNAI3 ENSG00000065135|ENST00000369851|GNAI3 ENSG00000065135|ENST00000369851|GNAI3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.744053 915.473554 0.04167 1.9116E-05 0.15262 7.0013E-05 0.19429 8.9129E-05 458.74415591748755 125.34 0.60847 120.74 120.36 120.97 -4.5984 -0.037286 1.4739E-05 NaN 57.471 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1914500 51416 1352 34127 34148 0.012436204142204588 VMVEKKAL 8 Unmodified _VMVEKKAL_ 0 0 0 REV__ENST00000397415.7_1_6:42847675-42848752:+|nuORF REV__ENST00000397415.7_1_6:42847675-42848752:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 459.2771911621094 2 459.278063 916.541574 NaN NaN NaN NaN NaN NaN NaN 137.27 1 132.63 132.13 133.13 -4.6413 0 0 0 0.23749 1 27090 27090 0.0082765 0 1 + 51417 21303 34128 34149 50334 50334 0.07996490064851969 VMVKKPHL 8 Unmodified _VMVKKPHL_ 0 0 0 REV__ENSG00000170364|ENST00000358065|SETMAR;REV__ENST00000425046.1_1_3:4345037-4358927:+|nuORF REV__ENSG00000170364|ENST00000358065|SETMAR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.8566589355469 3 317.865124 950.573543 NaN NaN NaN NaN NaN NaN NaN 9.215 1 8.4207 7.9207 8.9207 -0.79424 0 0 0 0.21486 1 1044 1044 0 0 1 + 51418 18154;21553 34129 34150 50335 50335 0.09627902538659328 VMVKKPHL 8 Unmodified _VMVKKPHL_ 0 0 0 REV__ENSG00000170364|ENST00000358065|SETMAR;REV__ENST00000425046.1_1_3:4345037-4358927:+|nuORF REV__ENSG00000170364|ENST00000358065|SETMAR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.86492919921875 3 317.865124 950.573543 NaN NaN NaN NaN NaN NaN NaN 9.2501 1 8.4558 7.9558 8.9558 -0.79424 0 0 0 0.21486 1 1051 1051 0 0 1 + 51419 18154;21553 34129 34150 50336 50336 0.09627902538659328 VMWLRHRRPRY 11 Unmodified _VMWLRHRRPRY_ 0 0 0 ENST00000509770.1_1_5:82352905-82373233:-|nuORF;ENST00000504622.5_1_5:82352937-82373269:-|nuORF;ENST00000502346.1_1_5:82360835-82373254:-|nuORF ENST00000509770.1_1_5:82352905-82373233:-|nuORF ENST00000509770.1_1_5:82352905-82373233:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3812255859375 2 785.438421 1568.86229 NaN NaN NaN NaN NaN NaN NaN 116.31 1 111.82 111.32 112.32 -4.486 0 0 0 0.22632 1 22934 22934 0.00056442 0 1 51420 10623 34130 34151 50337 50337 0.10061185498648229 VMWLRHRRPRY 11 Unmodified _VMWLRHRRPRY_ 0 0 0 ENST00000509770.1_1_5:82352905-82373233:-|nuORF;ENST00000504622.5_1_5:82352937-82373269:-|nuORF;ENST00000502346.1_1_5:82360835-82373254:-|nuORF ENST00000509770.1_1_5:82352905-82373233:-|nuORF ENST00000509770.1_1_5:82352905-82373233:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3980712890625 2 785.438421 1568.86229 NaN NaN NaN NaN NaN NaN NaN 116.41 1 111.92 111.42 112.42 -4.486 0 0 0 0.22632 1 22954 22954 0.00056442 0 1 51421 10623 34130 34151 50338 50338 0.10061185498648229 VMWLRHRRPRY 11 Unmodified _VMWLRHRRPRY_ 0 0 0 ENST00000509770.1_1_5:82352905-82373233:-|nuORF;ENST00000504622.5_1_5:82352937-82373269:-|nuORF;ENST00000502346.1_1_5:82360835-82373254:-|nuORF ENST00000509770.1_1_5:82352905-82373233:-|nuORF ENST00000509770.1_1_5:82352905-82373233:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3729248046875 2 785.438421 1568.86229 NaN NaN NaN NaN NaN NaN NaN 116.36 1 111.78 111.28 112.28 -4.5815 0 0 0 0.23698 1 22328 22328 0.30703 0 1 51422 10623 34130 34151 50339 50339 0.10061185498648229 VNADDARYY 9 Unmodified _VNADDARYY_ 0 0 0 REV__ENST00000510710.3_1_17:48263464-48264214:-|nuORF REV__ENST00000510710.3_1_17:48263464-48264214:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7877807617188 2 543.74617 1085.47779 NaN NaN NaN NaN NaN NaN NaN 129.1 1 124.47 123.97 124.97 -4.6292 0 0 0 0.23508 1 25447 25447 10.824 0.75 1 + 51423 15140 34131 34152 50340 50340 -0.06153198838546814 VNAEAAWPG 9 Unmodified _VNAEAAWPG_ 0 0 0 REV__IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant REV__IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22320556640625 2 457.721967 913.429381 0.15684 7.179E-05 0.10009 4.5814E-05 0.25693 0.0001176 457.7216338972993 60.743 0.49174 57.519 57.276 57.768 -3.2237 22 13 2 0 0 0 0.5059 1 11388 11388 19.257 2.1441 1 950100 + 51424 17921 34132 34153 50341 50341 -0.030796476877753776 VNAEAAWPG 9 Unmodified _VNAEAAWPG_ 0 0 0 REV__IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant REV__IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2381896972656 2 457.721967 913.429381 0.15684 7.179E-05 0.10009 4.5814E-05 0.25693 0.0001176 457.7216338972993 60.743 0.49174 57.519 57.276 57.768 -3.2237 22 13 2 0 0 0 0.66788 1 11403 11403 22.736 0 1 950100 + 51425 17921 34132 34153 50342 50342 -0.030796476877753776 VNDALEKLMF 10 Unmodified _VNDALEKLMF_ 0 0 0 ENST00000463455.1_1_22:32804140-32808230:-|nuORF;ENST00000487704.5_1_22:32797732-32808215:-|nuORF;RTCB|p.M246Wfs*11|4|0.28|ENSG00000100220|chr22:32398019-32398019|T/-|frameshift_variant;ENSG00000100220|ENST00000216038|RTCB ENST00000463455.1_1_22:32804140-32808230:-|nuORF ENST00000463455.1_1_22:32804140-32808230:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2534790039062 2 590.307549 1178.60055 NaN NaN NaN NaN NaN NaN NaN 155.73 1 155.73 155.23 156.23 0 0 0 0 0.22588 1 31224 31224 8.1555 0.24537 1 51426 1938 34133 34154 50343 50343 0.018389215685374438 VNDEIWSKP 9 Unmodified _VNDEIWSKP_ 0 0 0 REV__nc|ENSG00000137449|Q7Z5Q1-7|CPEB2 REV__nc|ENSG00000137449|Q7Z5Q1-7|CPEB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7900390625 2 544.274564 1086.53457 0.20706 0.0001127 0.27672 0.00015061 0.48378 0.00026331 544.2748656090779 102.27 1.3621 98.089 97.479 98.841 -4.1861 36 23 2 0 0 0 0.40602 2 20161 20161;20182 25.399 0 1 5056900 + 51427 13569 34134 34155 50344;50345 50344 -0.005231512820046191 VNDFSRAKK 9 Unmodified _VNDFSRAKK_ 0 0 0 nc|ENSG00000154328|Q969S2-3|NEIL2;nc|ENSG00000154328|Q969S2-2|NEIL2;ENSG00000154328|ENST00000284503|NEIL2 nc|ENSG00000154328|Q969S2-3|NEIL2 nc|ENSG00000154328|Q969S2-3|NEIL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2810668945312 2 532.795998 1063.57744 0.29599 0.0001577 -3.25 -0.0017316 -2.954 -0.0015739 532.7941947761992 106.84 0.17752 106.84 106.79 106.97 0 5 4 2 0 0 0 0.41081 1 21015 21015 0.12781 0 1 559890 51428 5007 34135 34156 50346 50346 0.048196635660815446 VNDKNYKDAL 10 Unmodified _VNDKNYKDAL_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2565307617188 2 590.303852 1178.59315 0.51946 0.00030664 -0.22082 -0.00013035 0.29863 0.00017628 590.3037086634386 50.6 1.035 50.6 50.095 51.131 0 86 29 4 0 0 0 0.61548 1 9505 9505 18.373 0 1 14019000 51429 2239 34136 34157 50347 50347 0.010999052924717034 VNDSQIQMMN 10 Unmodified _VNDSQIQMMN_ 0 0 0 REV__nc|ENSG00000183091|P20929-4|NEB REV__nc|ENSG00000183091|P20929-4|NEB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2616577148438 2 590.260273 1178.50599 NaN NaN NaN NaN NaN NaN NaN 19.611 1 17.976 17.476 18.476 -1.6351 0 0 0 0.22588 1 2970 2970 3.5965 0 1 + 51430 18819 34137 34158 50348 50348 -0.07611960245094451 VNDYKIKDV 9 Unmodified _VNDYKIKDV_ 0 0 0 REV__tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1 REV__tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7821655273438 2 547.298039 1092.58152 0.42229 0.00023112 3.6541 0.0019999 4.0764 0.002231 547.3009521066413 149.35 0.13962 144.23 144.18 144.32 -5.1204 5 3 2 0 0 0 0.58804 1 28941 28941 13.906 2.4113 1 1828300 + 51431 25356 34138 34159 50349 50349 0.038937082691290925 VNEDPEYQW 9 Unmodified _VNEDPEYQW_ 0 0 0 nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5;C2CD5|p.F331Lfs*5|1|0.32|ENSG00000111731|chr12:22513345-22513345|C/-|frameshift_variant;ENST00000541310.5_1_12:22631189-22697084:-|nuORF;C2CD5|p.D676Mfs*40|1|0.33|ENSG00000111731|chr12:22474769-22474769|T/-|frameshift_variant nc|ENSG00000111731|Q86YS7|C2CD5 nc|ENSG00000111731|Q86YS7|C2CD5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2598876953125 2 590.251286 1178.48802 NaN NaN NaN NaN NaN NaN NaN 160.08 1 160.08 159.58 160.58 0 0 0 0 0.19649 1 32145 32145 0.029283 0 1 51432 2643 34139 34160 50350 50350 -0.0940863590394656 VNEDTKIIY 9 Unmodified _VNEDTKIIY_ 0 0 0 REV__ENSG00000038219|ENST00000040738|BOD1L1;REV__BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant REV__ENSG00000038219|ENST00000040738|BOD1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7899169921875 2 547.790047 1093.56554 -0.11739 -6.4303E-05 0.39404 0.00021585 0.27666 0.00015155 547.7901988447297 108.92 0.73183 104.47 104.08 104.82 -4.4518 46 20 3 0 0 0 0.12505 3 20916 20865;20870;20916 47.749 9.1339 1 3199900 + 51433 14038;13201 34140 34161 50351;50352;50353 50353 0.022500020322468117 VNEDTKIIY 9 Unmodified _VNEDTKIIY_ 0 0 0 REV__ENSG00000038219|ENST00000040738|BOD1L1;REV__BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant REV__ENSG00000038219|ENST00000040738|BOD1L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7899169921875 2 547.790047 1093.56554 0.74907 0.00041034 -0.59009 -0.00032325 0.15898 8.7089E-05 547.7896904454676 108.56 0.58921 104.42 104.16 104.75 -4.135 30 16 2 0 0 0 0.17935 2 20912 20864;20912 39.95 3.8227 1 2674700 + 51434 14038;13201 34140 34161 50354;50355 50355 0.022500020322468117 VNEETKLVY 9 Unmodified _VNEETKLVY_ 0 0 0 nc|ENSG00000142002|Q86TI2-4|DPP9;DPP9|p.F814Sfs*10|1|0.34|ENSG00000142002|chr19:4679893-4679893|A/-|frameshift_variant;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;ENST00000597253.5_1_19:4688763-4694742:-|nuORF nc|ENSG00000142002|Q86TI2-4|DPP9 nc|ENSG00000142002|Q86TI2-4|DPP9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7896728515625 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 73.76 1 70.396 69.896 70.896 -3.3643 0 0 0 0.14843 1 14379 14379 30.637 2.4633 1 51435 885 34141 34162 50356 50356 0.022500020322468117 VNELRLDP 8 Unmodified _VNELRLDP_ 0 0 0 REV__ENSG00000171951|ENST00000305409|SCG2 REV__ENSG00000171951|ENST00000305409|SCG2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7268981933594 2 478.263999 954.513445 NaN NaN NaN NaN NaN NaN NaN 145.27 1 140.2 139.7 140.7 -5.0671 0 0 0 0.23664 1 28065 28065 3.2813 0 1 + 51436 18263 34142 34163 50357 50357 0.03436883409131042 VNERCVGIAWG 11 Unmodified _VNERCVGIAWG_ 0 0 0 REV__BTN1A1|p.D369G|1|0.07|ENSG00000124557|chr6:26508699-26508699|A/G|missense_variant REV__BTN1A1|p.D369G|1|0.07|ENSG00000124557|chr6:26508699-26508699|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2930908203125 2 602.30059 1202.58663 NaN NaN NaN NaN NaN NaN NaN 146.18 1 141.18 140.68 141.68 -5 0 0 0 0.22632 1 28285 28285 0.172 0.12821 1 + 51437 13219 34143 34164 50358 50358 -0.006563111398918409 VNERDVPKA 9 Unmodified _VNERDVPKA_ 0 0 0 nc|ENSG00000136155|O95171-3|SCEL;nc|ENSG00000136155|O95171-2|SCEL;ENSG00000136155|ENST00000349847|SCEL nc|ENSG00000136155|O95171-3|SCEL nc|ENSG00000136155|O95171-3|SCEL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.1885070800781 3 343.189212 1026.54581 -0.44469 -0.00015261 0.35434 0.0001216 -0.090359 -3.101E-05 343.1892839513221 17.361 0.41514 16.089 15.868 16.283 -1.2722 27 11 3 0 0 0 0.78323 1 2515 2515 2.4985 0.59211 1 1608900 51438 3988 34144 34165 50359 50359 0.033596708121422125 VNERDVPKA 9 Unmodified _VNERDVPKA_ 0 0 0 nc|ENSG00000136155|O95171-3|SCEL;nc|ENSG00000136155|O95171-2|SCEL;ENSG00000136155|ENST00000349847|SCEL nc|ENSG00000136155|O95171-3|SCEL nc|ENSG00000136155|O95171-3|SCEL MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 343.189212 1026.54581 -0.44013 -0.00015105 0.059513 2.0424E-05 -0.38061 -0.00013062 343.18913395792697 16.215 0.79851 16.215 15.849 16.647 0 0.085477 -0.00012165 NaN 2.4985 40 22 3 NaN NaN NaN NaN 0 NaN NaN 0 4541000 51439 3988 34144 34165 0.033596708121422125 VNERDVPKA 9 Unmodified _VNERDVPKA_ 0 0 0 nc|ENSG00000136155|O95171-3|SCEL;nc|ENSG00000136155|O95171-2|SCEL;ENSG00000136155|ENST00000349847|SCEL nc|ENSG00000136155|O95171-3|SCEL nc|ENSG00000136155|O95171-3|SCEL MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 343.189212 1026.54581 -0.51056 -0.00017522 0.027144 9.3154E-06 -0.48341 -0.0001659 343.1891532280764 17.396 0.65577 16.086 15.716 16.371 -1.3109 -0.044266 -0.00015498 NaN 2.4985 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2774300 51440 3988 34144 34165 0.033596708121422125 VNFEWWYLHYI 11 Unmodified _VNFEWWYLHYI_ 0 0 0 REV__ENSG00000132017|ENST00000254337|DCAF15 REV__ENSG00000132017|ENST00000254337|DCAF15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3770751953125 2 785.379894 1568.74524 NaN NaN NaN NaN NaN NaN NaN 92.326 1 88.401 87.901 88.901 -3.9251 0 0 0 0.23634 1 18080 18080 3.2813 0.78282 1 + 51441 16096 34145 34166 50360 50360 -0.016386939599442485 VNFEWWYLHYI 11 Unmodified _VNFEWWYLHYI_ 0 0 0 REV__ENSG00000132017|ENST00000254337|DCAF15 REV__ENSG00000132017|ENST00000254337|DCAF15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3804931640625 2 785.379894 1568.74524 NaN NaN NaN NaN NaN NaN NaN 132.23 1 127.59 127.09 128.09 -4.6399 0 0 0 0.23698 1 26064 26064 0.35063 0 1 + 51442 16096 34145 34166 50361 50361 -0.016386939599442485 VNFEWWYLHYI 11 Unmodified _VNFEWWYLHYI_ 0 0 0 REV__ENSG00000132017|ENST00000254337|DCAF15 REV__ENSG00000132017|ENST00000254337|DCAF15 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3834228515625 2 785.379894 1568.74524 NaN NaN NaN NaN NaN NaN NaN 80.512 1 76.673 76.173 77.173 -3.8392 0 0 0 0.23698 1 15282 15282 1.3295 0.9789 1 + 51443 16096 34145 34166 50362 50362 -0.016386939599442485 VNFEWWYLHYI 11 Unmodified _VNFEWWYLHYI_ 0 0 0 REV__ENSG00000132017|ENST00000254337|DCAF15 REV__ENSG00000132017|ENST00000254337|DCAF15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3831176757812 2 785.379894 1568.74524 NaN NaN NaN NaN NaN NaN NaN 82.219 1 78.521 78.021 79.021 -3.6985 0 0 0 0.23379 1 15677 15677 5.2969 3.815 1 + 51444 16096 34145 34166 50363 50363 -0.016386939599442485 VNFGCDYHQY 10 Unmodified _VNFGCDYHQY_ 0 0 0 ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP;GSAP|p.L619*|1|0.21|ENSG00000186088|chr7:77323714-77323714|A/-|frameshift_variant;GSAP|p.D616Gfs*8|1|0.14|ENSG00000186088|chr7:77323701-77323723|CTGTAGGTGTCTCAAAAAATGGT/-|frameshift_variant;ENSG00000186088|ENST00000257626|GSAP ENST00000334003.11_1_7:76959552-77026708:-|nuORF ENST00000334003.11_1_7:76959552-77026708:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.760009765625 2 623.253305 1244.49206 0.36906 0.00023002 -0.26096 -0.00016265 0.1081 6.7374E-05 623.2531896548427 76.623 0.90804 72.989 72.409 73.317 -3.6337 63 25 3 0 0 0 0.59264 1 14585 14585 36.127 5.4905 1 8539000 51445 7032 34146 34167 50364 50364 -0.12040869681891309 VNFGPHLD 8 Unmodified _VNFGPHLD_ 0 0 0 SCML2|p.G365V|1|0.65|ENSG00000102098|chrX:18258223-18258223|C/A|missense_variant SCML2|p.G365V|1|0.65|ENSG00000102098|chrX:18258223-18258223|C/A|missense_variant SCML2|p.G365V|1|0.65|ENSG00000102098|chrX:18258223-18258223|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 300.1524963378906 3 300.152099 897.434466 NaN NaN NaN NaN NaN NaN NaN 114.46 1 110.14 109.64 110.64 -4.3136 0 0 0 0.21486 1 22043 22043 1.4819 1.0236 1 51446 25638 34147 34168 50365 50365 -0.018353438251438092 VNFTLFFR 8 Unmodified _VNFTLFFR_ 0 0 0 nc|ENSG00000163629|Q12923-2|PTPN13;PTPN13|p.T2330Qfs*13|1|0.12|ENSG00000163629|chr4:86807799-86807799|A/-|frameshift_variant;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13;PTPN13|p.F663Lfs*7|1|0.11|ENSG00000163629|chr4:86734428-86734428|T/-|frameshift_variant;PTPN13|p.N1374Mfs*7|1|0.15|ENSG00000163629|chr4:86764692-86764692|A/-|frameshift_variant;PTPN13|p.K1535Sfs*16|1|0.38|ENSG00000163629|chr4:86769879-86769879|A/-|frameshift_variant nc|ENSG00000163629|Q12923-2|PTPN13 nc|ENSG00000163629|Q12923-2|PTPN13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2739868164062 2 522.287277 1042.56 NaN NaN NaN NaN NaN NaN NaN 80.043 1 80.043 79.543 80.543 0 0 0 0 0.21486 1 15581 15581 5.2307 0 1 51447 12419 34148 34169 50366 50366 0.04042368031082333 VNFVLARDEFY 11 Unmodified _VNFVLARDEFY_ 0 0 0 ENST00000295927.3_1_3:157161088-157161142:+|nuORF ENST00000295927.3_1_3:157161088-157161142:+|nuORF ENST00000295927.3_1_3:157161088-157161142:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2337341308594 3 458.23471 1371.6823 NaN NaN NaN NaN NaN NaN NaN 120.46 1 120.46 119.96 120.96 0 0 0 0 0.22632 1 23744 23744 0.172 0.060958 1 51448 8497 34149 34170 50367 50367 0.011327402519782481 VNGFTALALTK 11 Unmodified _VNGFTALALTK_ 0 0 0 TTYH3-ADSSL1|1|fusion;ENSG00000185100|ENST00000330877|ADSS1;nc|ENSG00000185100|Q8N142-2|ADSS1 TTYH3-ADSSL1|1|fusion TTYH3-ADSSL1|1|fusion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.8887023925781 3 378.888763 1133.64446 NaN NaN NaN NaN NaN NaN NaN 179.96 1 175.17 174.67 175.67 -4.7898 0 0 0 0.23698 1 36815 36815 0 0 1 51449 6960 34150 34171 50368 50368 0.08298274057142407 VNGGGGAA 8 Unmodified _VNGGGGAA_ 0 0 0 REV__ENST00000289292.11_1_X:50557033-50557165:-|nuORF REV__ENST00000289292.11_1_X:50557033-50557165:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2907104492188 1 602.289265 601.281989 0.72549 0.00043696 -3.7094 -0.0022341 -2.9839 -0.0017972 602.2871031650945 81.109 0.10764 81.109 81.019 81.127 0 4 2 2 0 0 0 8448 1 15797 15797 0 0 1 1412500 + 51450 20347 34151 34172 50369 50369 -0.0346011950191496 VNGYPFARAS 10 Unmodified _VNGYPFARAS_ 0 0 0 REV__ENST00000513008.5_1_4:54292015-54325613:+|nuORF REV__ENST00000513008.5_1_4:54292015-54325613:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2714233398438 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 146.38 1 141.38 140.88 141.88 -5 0 0 0 2.8426 1 28325 28325 0.043787 0 1 + 51451 16828 34152 34173 50370 50370 -0.001803118423140404 VNIHARHSI 9 Unmodified _VNIHARHSI_ 0 0 0 REV__NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant REV__NBEAL1|p.F1670Lfs*25|1|0.21|ENSG00000144426|chr2:203144843-203144843|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6932983398438 2 523.796332 1045.57811 -0.04264 -2.2334E-05 -3.0033 -0.0015731 -3.0459 -0.0015954 524.296560005942 153.43 0.21036 148.66 148.48 148.69 -4.7684 6 5 2 0 0 0 0.55979 1 30471 30471 15.847 1.2655 1 1203000 + 51452 16783 34153 34174 50371 50371 0.05714503005788174 VNIKACIKL 9 Unmodified _VNIKACIKL_ 0 0 0 REV__ENSG00000111752|ENST00000544916|PHC1 REV__ENSG00000111752|ENST00000544916|PHC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 334.25860595703125 3 334.544051 1000.61032 -2.2947 -0.00076767 -0.59347 -0.00019854 -2.8882 -0.00096621 334.87709222004327 7.8042 1.0073 6.7894 6.2156 7.2229 -1.0148 40 28 2 0 0 0 0.88478 1 650 650 0 0 1 202970 + 51453 15261 34154 34175 50372 50372 0.11004154364559326 VNILRIPAKR 10 Unmodified _VNILRIPAKR_ 0 0 0 ENST00000560511.5_1_15:78923416-78927882:-|nuORF;nc|ENSG00000117971|P30926-2|CHRNB4;ENSG00000117971|ENST00000261751|CHRNB4 ENST00000560511.5_1_15:78923416-78927882:-|nuORF ENST00000560511.5_1_15:78923416-78927882:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.267578125 2 590.387857 1178.76116 NaN NaN NaN NaN NaN NaN NaN 161.13 1 161.13 160.63 161.63 0 0 0 0 2.8426 1 32359 32359 0.0013812 0.0008168 1 51454 3009 34155 34176 50373 50373 0.17893057067590235 VNIPIITELV 10 Unmodified _VNIPIITELV_ 0 0 0 nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1 nc|ENSG00000156113|Q12791-5|KCNMA1 nc|ENSG00000156113|Q12791-5|KCNMA1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 555.84130859375 2 555.842082 1109.66961 NaN NaN NaN NaN NaN NaN NaN 11.531 1 10.464 9.9645 10.964 -1.0664 0 0 0 0.22588 1 1316 1316 0.40072 0 1 51455 5077 34156 34177 50374 50374 0.1191632885972922 VNIVKLFVY 9 Unmodified _VNIVKLFVY_ 0 0 0 ENST00000447399.6_1_11:9771951-9772089:+|nuORF ENST00000447399.6_1_11:9771951-9772089:+|nuORF ENST00000447399.6_1_11:9771951-9772089:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7745971679688 2 547.83406 1093.65357 NaN NaN NaN NaN NaN NaN NaN 44.226 1 44.226 43.726 44.726 0 0 0 0 0.23508 1 8292 8292 4.756 0.42677 1 51456 9948 34157 34178 50375 50375 0.11048667413524527 VNIVKLFVY 9 Unmodified _VNIVKLFVY_ 0 0 0 ENST00000447399.6_1_11:9771951-9772089:+|nuORF ENST00000447399.6_1_11:9771951-9772089:+|nuORF ENST00000447399.6_1_11:9771951-9772089:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7830810546875 2 547.83406 1093.65357 NaN NaN NaN NaN NaN NaN NaN 134.2 1 134.2 133.7 134.7 0 0 0 0 0.19632 1 26562 26562 0.073264 0 1 51457 9948 34157 34178 50376 50376 0.11048667413524527 VNIWLRLR 8 Unmodified _VNIWLRLR_ 0 0 0 REV__ENST00000602402.5_1_13:96443709-96443949:+|nuORF REV__ENST00000602402.5_1_13:96443709-96443949:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.5591735839844 3 357.225821 1068.65563 -2.2938 -0.00081941 -1.1964 -0.00042739 -3.4902 -0.0012468 357.22532115684254 14.485 0.17655 13.275 13.172 13.348 -1.2106 6 4 2 0 0 0 1.0115 1 1925 1925 10.824 0 1 224520 + 51458 23425 34158 34179 50377 50377 0.12405140941973514 VNKDPIFE 8 Unmodified _VNKDPIFE_ 0 0 0 REV__tr|U7T601|U7T601_FUSNUTryptophansynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpBPE=3SV=1 REV__tr|U7T601|U7T601_FUSNUTryptophansynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpBPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2544860839844 2 481.2531 960.491647 0.054447 2.6203E-05 0.44289 0.00021314 0.49734 0.00023935 481.2532559292357 65.088 1.1882 62.041 61.522 62.71 -3.047 72 34 3 0 0 0 0.69031 1 12717 12717 15.847 0 1 3888300 + 51459 25431 34159 34180 50378 50378 0.00982078660570096 VNKHRLRRLL 10 Unmodified _VNKHRLRRLL_ 0 0 0 REV__STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant REV__STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 327.20050048828125 4 326.965103 1303.83131 0.19587 6.4041E-05 0.85029 0.00027802 1.0462 0.00034206 327.21611070116853 176.03 1.7882 171.15 170.32 172.1 -4.8739 78 50 2 0 0 0 0.91149 1 34931 34931 0.15932 0.15932 1 3684700 + 51460 15537 34160 34181 50379 50379 0.19154355456066696 VNKNRVSI 8 Unmodified _VNKNRVSI_ 0 0 0 CD300LD|p.K75N|1|0.09|ENSG00000204345|chr17:74588665-74588665|C/A|missense_variant CD300LD|p.K75N|1|0.09|ENSG00000204345|chr17:74588665-74588665|C/A|missense_variant CD300LD|p.K75N|1|0.09|ENSG00000204345|chr17:74588665-74588665|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2392883300781 2 465.279983 928.545414 0.14101 6.5607E-05 0.15427 7.1778E-05 0.29528 0.00013739 465.2800084817254 34.747 0.38758 32.495 32.254 32.641 -2.2527 18 10 2 0 0 0 0.72565 1 6104 6104 20.454 0 1 1218100 51461 446 34161 34182 50380 50380 0.07828295882939074 VNKRQPLRA 9 Unmodified _VNKRQPLRA_ 0 0 0 ENST00000452042.1_1_3:49022609-49022810:-|nuORF ENST00000452042.1_1_3:49022609-49022810:-|nuORF ENST00000452042.1_1_3:49022609-49022810:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2700805664062 2 541.333082 1080.65161 NaN NaN NaN NaN NaN NaN NaN 140.37 1 135.73 135.23 136.23 -4.6463 0 0 0 0.19632 1 27716 27716 0.40827 0 1 51462 9984 34162 34183 50381 50381 0.11451051448261751 VNKRQWCH 8 Unmodified _VNKRQWCH_ 0 0 0 REV__ENST00000476050.5_1_1:209948949-209949477:+|nuORF REV__ENST00000476050.5_1_1:209948949-209949477:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.0731506347656 3 357.515265 1069.52397 -2.1592 -0.00077195 0.82041 0.00029331 -1.3388 -0.00047864 357.51554590418334 16.388 1.6605 15.034 14.341 16.001 -1.3534 96 47 3 0 0 0 1.0281 1 2188 2188 0.45834 0 1 4294300 + 51463 22103 34163 34184 50382 50382 -0.00801412417422398 VNKVNMPN 8 Unmodified _VNKVNMPN_ 0 0 0 REV__ZFP30|p.T131Pfs*161|1|0.12|ENSG00000120784|chr19:37636150-37636150|T/-|frameshift_variant REV__ZFP30|p.T131Pfs*161|1|0.12|ENSG00000120784|chr19:37636150-37636150|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2386779785156 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 61.731 1 58.77 58.27 59.27 -2.9614 0 0 0 0.21486 1 11905 11905 12.532 0.89125 1 + 51464 25563 34164 34185 50383 50383 0.003732718485366604 VNKWYIDK 8 Unmodified _VNKWYIDK_ 0 0 0 REV__ENST00000460488.5_1_13:22069439-22077232:-|nuORF REV__ENST00000460488.5_1_13:22069439-22077232:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2713623046875 2 533.290017 1064.56548 NaN NaN NaN NaN NaN NaN NaN 111.26 1 106.84 106.34 107.34 -4.4231 0 0 0 0.22847 1 21920 21920 10.074 0 1 + 51465 17774 34165 34186 50384 50384 0.035780468228722384 VNLERKLRR 9 Unmodified _VNLERKLRR_ 0 0 0 CARD11|p.S433R|1|0.33|ENSG00000198286|chr7:2937079-2937079|G/T|missense_variant CARD11|p.S433R|1|0.33|ENSG00000198286|chr7:2937079-2937079|G/T|missense_variant CARD11|p.S433R|1|0.33|ENSG00000198286|chr7:2937079-2937079|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 592.6548461914062 2 592.372738 1182.73092 NaN NaN NaN NaN NaN NaN NaN 178.36 1 173.45 172.95 173.95 -4.9088 0 0 0 0.19626 1 35579 35579 0.0033805 0 1 51466 389 34166 34187 50385 50385 0.14686698402374532 VNLILPIF 8 Unmodified _VNLILPIF_ 0 0 0 REV__LPAR6|p.T202I|1|0.09|ENSG00000139679|chr13:48411819-48411819|G/A|missense_variant REV__LPAR6|p.T202I|1|0.09|ENSG00000139679|chr13:48411819-48411819|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16522216796875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 137.52 1 132.87 132.37 133.37 -4.6413 0 0 0 0.21486 1 27141 27141 0.45834 0 1 + 51467 16535 34167 34188 50386 50386 0.1126532432199383 VNLILPIF 8 Unmodified _VNLILPIF_ 0 0 0 REV__LPAR6|p.T202I|1|0.09|ENSG00000139679|chr13:48411819-48411819|G/A|missense_variant REV__LPAR6|p.T202I|1|0.09|ENSG00000139679|chr13:48411819-48411819|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1645812988281 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 137.79 1 132.87 132.37 133.37 -4.9216 0 0 0 0.21486 1 26492 26492 0.45834 0 1 + 51468 16535 34167 34188 50387 50387 0.1126532432199383 VNLILPIF 8 Unmodified _VNLILPIF_ 0 0 0 REV__LPAR6|p.T202I|1|0.09|ENSG00000139679|chr13:48411819-48411819|G/A|missense_variant REV__LPAR6|p.T202I|1|0.09|ENSG00000139679|chr13:48411819-48411819|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 138.07 1 133.15 132.65 133.65 -4.9216 0 0 0 0.21486 1 26548 26548 0.45834 0 1 + 51469 16535 34167 34188 50388 50388 0.1126532432199383 VNLILPIF 8 Unmodified _VNLILPIF_ 0 0 0 REV__LPAR6|p.T202I|1|0.09|ENSG00000139679|chr13:48411819-48411819|G/A|missense_variant REV__LPAR6|p.T202I|1|0.09|ENSG00000139679|chr13:48411819-48411819|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16510009765625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 147.73 1 142.67 142.17 143.17 -5.0595 0 0 0 0.2396 1 28605 28605 0.30703 0 1 + 51470 16535 34167 34188 50389 50389 0.1126532432199383 VNLKLGDD 8 Unmodified _VNLKLGDD_ 0 0 0 ENST00000528824.1_1_1:99156655-99156700:+|nuORF ENST00000528824.1_1_1:99156655-99156700:+|nuORF ENST00000528824.1_1_1:99156655-99156700:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2286376953125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 76.786 1 73.152 72.652 73.652 -3.6337 0 0 0 0.23749 1 14618 14618 0.12286 0 1 51471 10942 34168 34189 50390 50390 0.019015056264606756 VNLLITPVK 9 Unmodified _VNLLITPVK_ 0 0 0 tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1 tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1 tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 333.0102233886719 3 332.886582 995.637917 0.26879 8.9476E-05 -0.59193 -0.00019705 -0.32314 -0.00010757 332.8864283606609 32.165 0.34848 30.139 29.974 30.323 -2.0264 13 9 2 0 0 0 0.8825 1 5547 5547 0 0 1 342770 51472 26227 34169 34190 50391 50391 0.13992380896468148 VNLNLKGP 8 Unmodified _VNLNLKGP_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 429.25543212890625 2 427.758352 853.502152 0.093576 4.0028E-05 -0.025811 -1.1041E-05 0.067766 2.8987E-05 427.7582842647033 62.143 1.2945 58.774 58.185 59.479 -3.3694 102 36 4 0 0 0 8448 1 11561 11561 10.074 3.4436 1 26355000 51473 3339 34170 34191 50392 50392 0.0695410610566114 VNLNLKGP 8 Unmodified _VNLNLKGP_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 427.758352 853.502152 -0.18636 -7.9718E-05 0.45966 0.00019663 0.2733 0.00011691 427.75849456809624 58.934 1.3062 58.934 58.377 59.683 0 0.13396 0.00022159 NaN 10.074 88 36 4 NaN NaN NaN NaN 0 NaN NaN 0 17872000 51474 3339 34170 34191 0.0695410610566114 VNLNLKGP 8 Unmodified _VNLNLKGP_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 427.758352 853.502152 -0.10735 -4.592E-05 0.11793 5.0447E-05 0.010584 4.5274E-06 427.7583461496905 61.682 1.396 58.72 58.14 59.536 -2.9614 -0.079267 -7.0767E-05 NaN 10.074 98 39 4 NaN NaN NaN NaN 0 NaN NaN 0 30124000 51475 3339 34170 34191 0.0695410610566114 VNLNLKGP 8 Unmodified _VNLNLKGP_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 427.758352 853.502152 -0.045483 -1.9456E-05 0.22336 9.5544E-05 0.17788 7.6089E-05 427.7583859241786 62.01 1.488 58.771 58.103 59.591 -3.2395 -0.028818 1.9427E-05 NaN 10.074 112 42 4 NaN NaN NaN NaN 0 NaN NaN 0 31008000 51476 3339 34170 34191 0.0695410610566114 VNLQMLTYL 9 Unmodified _VNLQMLTYL_ 0 0 0 ENST00000443945.6_1_13:47127426-47279607:+|nuORF;nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000136141|Q9Y2L9|LRCH1;ENSG00000136141|ENST00000389797|LRCH1 ENST00000443945.6_1_13:47127426-47279607:+|nuORF ENST00000443945.6_1_13:47127426-47279607:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.783203125 2 547.79936 1093.58417 NaN NaN NaN NaN NaN NaN NaN 139.38 1 134.43 133.93 134.93 -4.952 0 0 0 0.22251 1 26811 26811 16.942 0 1 51477 9918 34171 34192 50393 50393 0.04111840402424605 VNLRHVDIL 9 Unmodified _VNLRHVDIL_ 0 0 0 REV__TTC21B|p.G631V|1|0.32|ENSG00000123607|chr2:165917264-165917264|C/A|missense_variant REV__TTC21B|p.G631V|1|0.32|ENSG00000123607|chr2:165917264-165917264|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2166748046875 3 360.217102 1077.62948 NaN NaN NaN NaN NaN NaN NaN 155.2 1 150.42 149.92 150.92 -4.7791 0 0 0 0.23508 1 30850 30850 2.7352 0 1 + 51478 25496 34172 34193 50394 50394 0.09376826979860198 VNLRKQRVG 9 Unmodified _VNLRKQRVG_ 0 0 0 REV__ENSG00000117461|ENST00000262741|PIK3R3 REV__ENSG00000117461|ENST00000262741|PIK3R3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.5579528808594 3 357.22448 1068.65161 -0.38519 -0.0001376 0.56341 0.00020126 0.17822 6.3665E-05 357.22466994850765 13.645 0.27371 13.645 13.446 13.719 0 13 7 2 0 0 0 0.78802 1 1964 1964 2.2828 0 1 597290 + 51479 15521 34173 34194 50395 50395 0.12003051448255064 VNLSAFHIRF 10 Unmodified _VNLSAFHIRF_ 0 0 0 ENST00000561733.5_1_X:135954456-135955467:-|nuORF ENST00000561733.5_1_X:135954456-135955467:-|nuORF ENST00000561733.5_1_X:135954456-135955467:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2816772460938 2 602.33529 1202.65603 NaN NaN NaN NaN NaN NaN NaN 134.77 1 130.13 129.63 130.63 -4.6399 0 0 0 0.22588 1 26579 26579 10.074 3.8681 1 51480 11307 34174 34195 50396 50396 0.06280515871162606 VNLVMRKTY 9 Unmodified _VNLVMRKTY_ 0 0 0 REV__CEP57L1|p.F288Lfs*3|1|0.37|ENSG00000183137|chr6:109159307-109159307|T/-|frameshift_variant REV__CEP57L1|p.F288Lfs*3|1|0.37|ENSG00000183137|chr6:109159307-109159307|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21600341796875 3 375.214593 1122.62195 NaN NaN NaN NaN NaN NaN NaN 176.04 1 171.17 170.67 171.67 -4.8739 0 0 0 0.23508 1 35011 35011 0.26902 0 1 + 51481 13382 34175 34196 50397 50397 0.06554351387921997 VNNKEDYY 8 Unmodified _VNNKEDYY_ 0 0 0 REV__tr|U7SYX2|U7SYX2_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00846PE=4SV=1 REV__tr|U7SYX2|U7SYX2_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00846PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6760864257812 2 522.735271 1043.45599 0.18746 9.7995E-05 -0.52154 -0.00027263 -0.33408 -0.00017463 522.7349721602236 120.69 0.71983 120.69 120.32 121.04 0 41 19 3 0 0 0 0.73936 1 23790 23790 8.5933 1.304 1 6457000 + 51482 25234 34176 34197 50398 50398 -0.064000035871004 VNNKEDYY 8 Unmodified _VNNKEDYY_ 0 0 0 REV__tr|U7SYX2|U7SYX2_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00846PE=4SV=1 REV__tr|U7SYX2|U7SYX2_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00846PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7002563476562 2 522.735271 1043.45599 -0.077616 -4.0572E-05 -0.37192 -0.00019442 -0.44954 -0.00023499 522.7350027319106 125.65 0.67499 121.05 120.72 121.4 -4.5984 41 18 3 0 0 0 0.76728 1 24778 24778 5.7604 0.028577 1 4765200 + 51483 25234 34176 34197 50399 50399 -0.064000035871004 VNPIGLVI 8 Unmodified _VNPIGLVI_ 0 0 0 REV__tr|U7STZ9|U7STZ9_FUSNURibosomebiogenesisGTPaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01260PE=3SV=1 REV__tr|U7STZ9|U7STZ9_FUSNURibosomebiogenesisGTPaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01260PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 412.764404296875 2 412.765646 823.516739 NaN NaN NaN NaN NaN NaN NaN 7.1299 1 6.115 5.615 6.615 -1.0148 0 0 0 0.2396 1 547 547 0.0082765 0 1 + 51484 25133 34177 34198 50400 50400 0.09792178253792372 VNPKILRTG 9 Unmodified _VNPKILRTG_ 0 0 0 nc|ENSG00000177947|Q96PU9-2|CIMAP1A;nc|ENSG00000177947|Q96PU9-3|CIMAP1A;ENSG00000177947|ENST00000325113|ODF3 nc|ENSG00000177947|Q96PU9-2|CIMAP1A nc|ENSG00000177947|Q96PU9-2|CIMAP1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.2104187011719 3 333.209948 996.608014 NaN NaN NaN NaN NaN NaN NaN 92.966 1 88.975 88.475 89.475 -3.9907 0 0 0 0.23508 1 18211 18211 2.4985 0 1 51485 6548 34178 34199 50401 50401 0.10957441951154578 VNPVQPARY 9 Unmodified _VNPVQPARY_ 0 0 0 ENST00000309775.8_1_11:65222922-65233671:+|nuORF ENST00000309775.8_1_11:65222922-65233671:+|nuORF ENST00000309775.8_1_11:65222922-65233671:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2771606445312 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 143.85 1 138.78 138.28 139.28 -5.0671 0 0 0 0.19451 1 27736 27736 1.2148 0.80657 1 51486 8635 34179 34200 50402 50402 0.03640278537386621 VNQANGIEA 9 Unmodified _VNQANGIEA_ 0 0 0 ABO|p.D290N|1|0.29|ENSG00000175164|chr9:133255860-133255860|C/T|missense_variant ABO|p.D290N|1|0.29|ENSG00000175164|chr9:133255860-133255860|C/T|missense_variant ABO|p.D290N|1|0.29|ENSG00000175164|chr9:133255860-133255860|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.230224609375 2 458.230156 914.445759 0.51651 0.00023668 -0.33757 -0.00015469 0.17894 8.1996E-05 458.2299994951408 29.757 0.48799 27.683 27.413 27.901 -2.0743 33 13 4 0 0 0 0.40602 1 5077 5077 25.399 0 1 4395500 51487 26 34180 34201 50403 50403 -0.0148856652166387 VNQHLVSIKN 10 Unmodified _VNQHLVSIKN_ 0 0 0 REV__FGD6|p.M414Wfs*11|1|0.26|ENSG00000180263|chr12:95210044-95210044|T/-|frameshift_variant REV__FGD6|p.M414Wfs*11|1|0.26|ENSG00000180263|chr12:95210044-95210044|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3264770507812 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 147.96 1 142.9 142.4 143.4 -5.0595 0 0 0 2.8426 1 28654 28654 0.063865 0 1 + 51488 18680 34181 34202 50404 50404 0.07655908145943613 VNQITVEA 8 Unmodified _VNQITVEA_ 0 0 0 REV__nc|ENSG00000123146|P48960-2|ADGRE5 REV__nc|ENSG00000123146|P48960-2|ADGRE5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23565673828125 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 76.6 1 72.966 72.466 73.466 -3.6337 0 0 0 0.21486 1 14583 14583 7.9102 0 1 + 51489 15719 34182 34203 50405 50405 0.019015056264720442 VNQKLNREFI 10 Unmodified _VNQKLNREFI_ 0 0 0 REV__tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1 REV__tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7784423828125 2 630.856586 1259.69862 0.68896 0.00043463 -0.37887 -0.00023901 0.31008 0.00019562 630.8563540873969 105.04 0.55765 105.04 104.76 105.32 0 26 15 2 0 0 0 0.26497 1 20666 20666 39.95 2.1784 1 3341400 + 51490 25099 34183 34204 50406 50406 0.07915866208759326 VNQRLRYRRYA 11 Unmodified _VNQRLRYRRYA_ 0 0 0 REV__SCN9A|p.T1946Nfs*14|1|0.31|ENSG00000169432|chr2:166198802-166198803|-/T|frameshift_variant REV__SCN9A|p.T1946Nfs*14|1|0.31|ENSG00000169432|chr2:166198802-166198803|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 498.9144287109375 3 498.951531 1493.83276 NaN NaN NaN NaN NaN NaN NaN 137.21 1 137.21 136.71 137.71 0 0 0 0 0.23698 1 27208 27208 1.2148 0.4383 1 + 51491 18103 34184 34205 50407 50407 0.10559944754163553 VNQWTTNV 8 Unmodified _VNQWTTNV_ 0 0 0 ENSG00000146425|ENST00000367089|DYNLT1 ENSG00000146425|ENST00000367089|DYNLT1 ENSG00000146425|ENST00000367089|DYNLT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2399597167969 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 157.64 1 152.37 151.87 152.87 -5.2712 0 0 0 0.21486 1 30578 30578 9.3474 1.4373 1 51492 4654 34185 34206 50408 50408 -0.015319761420073519 VNRIRIKL 8 Unmodified _VNRIRIKL_ 0 0 0 REV__ENSG00000173809|ENST00000639142|TDRD12 REV__ENSG00000173809|ENST00000639142|TDRD12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 506.3450012207031 2 506.342918 1010.67128 NaN NaN NaN NaN NaN NaN NaN 171.33 1 166.54 166.04 167.04 -4.7898 0 0 0 0.21486 1 34829 34829 0.79363 0 1 + 51493 18376 34186 34207 50409 50409 0.16637427459022547 VNRLSFVRNR 10 Unmodified _VNRLSFVRNR_ 0 0 0 nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT;ENST00000468970.1_1_1:150804279-150808966:-|nuORF nc|ENSG00000143437|P27540-2|ARNT nc|ENSG00000143437|P27540-2|ARNT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.751708984375 2 630.86782 1259.72109 NaN NaN NaN NaN NaN NaN NaN 156.13 1 156.13 155.63 156.63 0 0 0 0 0.22588 1 31316 31316 10.8 1.4164 1 51494 4487 34187 34208 50410 50410 0.10161510397028906 VNRRKVPA 8 Unmodified _VNRRKVPA_ 0 0 0 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.313720703125 3 313.866404 938.577383 -0.57846 -0.00018156 0.6305 0.00019789 0.052046 1.6335E-05 313.8665898788531 15.339 0.27095 14.117 13.929 14.2 -1.2219 12 7 2 0 0 0 0.88811 1 2108 2108 0.45834 0 1 662350 + 51495 14261 34188 34209 50411 50411 0.10563708356744428 VNRRKVPA 8 Unmodified _VNRRKVPA_ 0 0 0 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 313.866404 938.577383 -0.8791 -0.00027592 1.1606 0.00036426 0.28146 8.8341E-05 313.8666694696321 15.263 0.35077 14.149 13.921 14.272 -1.1142 0.016109 0.00027956 NaN 0.45834 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 624950 + 51496 14261 34188 34209 0.10563708356744428 VNRRKVPA 8 Unmodified _VNRRKVPA_ 0 0 0 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 313.866404 938.577383 -0.57846 -0.00018156 0.6305 0.00019789 0.052046 1.6335E-05 313.8665898788531 15.339 0.27095 14.117 13.929 14.2 -1.2219 -0.016109 -0.00021954 NaN 0.45834 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 662350 + 51497 14261 34188 34209 0.10563708356744428 VNSGLLFR 8 Unmodified _VNSGLLFR_ 0 0 0 REV__CSMD1|p.S718N|1|0.27|ENSG00000183117|chr8:3406143-3406143|C/T|missense_variant REV__CSMD1|p.S718N|1|0.27|ENSG00000183117|chr8:3406143-3406143|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.76470947265625 2 453.263802 904.513051 0.42125 0.00019094 -0.5879 -0.00026647 -0.16665 -7.5535E-05 453.26352143250915 117 0.46559 112.64 112.44 112.91 -4.3585 16 12 2 0 0 0 8448 1 22547 22547 20.454 8.213 1 522540 + 51498 13592 34189 34210 50412 50412 0.05697508479943281 VNSKILLEE 9 Unmodified _VNSKILLEE_ 0 0 0 tr|U7SM02|U7SM02_FUSNUSseBproteinN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02002PE=4SV=1 tr|U7SM02|U7SM02_FUSNUSseBproteinN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02002PE=4SV=1 tr|U7SM02|U7SM02_FUSNUSseBproteinN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02002PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2767333984375 2 522.800414 1043.58628 -0.41191 -0.00021535 -0.17088 -8.9338E-05 -0.58279 -0.00030468 522.7999465273166 52.984 0.31789 50.1 49.999 50.317 -2.8837 11 8 2 0 0 0 0.87511 1 10070 10070 3.9444 0 1 373040 51499 25997 34190 34211 50413 50413 0.06622592411918049 VNSQEIHML 9 Unmodified _VNSQEIHML_ 0 0 0 nc|ENSG00000131831|Q9Y5P3-2|RAI2;ENSG00000131831|ENST00000451717|RAI2 nc|ENSG00000131831|Q9Y5P3-2|RAI2 nc|ENSG00000131831|Q9Y5P3-2|RAI2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.55255126953125 3 357.51482 1069.52263 -0.6983 -0.00024965 0.72429 0.00025894 0.025982 9.2891E-06 357.5150602882244 16.137 1.3659 14.921 14.479 15.845 -1.2159 107 38 4 0 0 0 0.78802 1 2450 2450 2.2828 0.43854 1 6023300 51500 3697 34191 34212 50414 50414 -0.009350912968329794 VNSSIIAA 8 Unmodified _VNSSIIAA_ 0 0 0 ENST00000476703.1_1_3:65455956-65464342:-|nuORF;ENST00000464060.5_1_3:65438903-66023983:-|nuORF;nc|ENSG00000151276|Q96QZ7-4|MAGI1;nc|ENSG00000151276|Q96QZ7-3|MAGI1;nc|ENSG00000151276|Q96QZ7-5|MAGI1;nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1;nc|ENSG00000151276|Q96QZ7|MAGI1 ENST00000476703.1_1_3:65455956-65464342:-|nuORF ENST00000476703.1_1_3:65455956-65464342:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7215881347656 2 387.721436 773.428318 -0.092452 -3.5846E-05 0.44564 0.00017278 0.35319 0.00013694 387.7215178713328 33.216 0.73621 33.216 32.954 33.69 0 32 20 2 0 0 0 0.77935 1 6123 6123 5.2307 0 1 1096100 51501 4857 34192 34213 50415 50415 0.03254137943326896 VNTAGPIL 8 Unmodified _VNTAGPIL_ 0 0 0 REV__ENST00000567704.5_1_15:78188620-78189748:+|nuORF REV__ENST00000567704.5_1_15:78188620-78189748:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.38330078125 1 784.45633 783.449054 0.52796 0.00041416 0.071487 5.6078E-05 0.59945 0.00047024 784.4562714449604 82.882 0.77146 79.274 78.884 79.656 -3.6079 39 21 2 0 0 0 0.58432 1 16124 16124 23.148 3.7094 1 6343900 + 51502 23134 34193 34214 50416 50416 0.04866728323008829 VNTDCGHTGIY 11 Unmodified _VNTDCGHTGIY_ 0 0 0 REV__NID1|p.A683V|1|0.24|ENSG00000116962|chr1:236024150-236024150|G/A|missense_variant REV__NID1|p.A683V|1|0.24|ENSG00000116962|chr1:236024150-236024150|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2627563476562 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 147.22 1 147.22 146.72 147.72 0 0 0 0 0.22632 1 29448 29448 0.026206 0 1 + 51503 24358 34194 34215 50417 50417 -0.07948887027441742 VNTDCGHTGIY 11 Unmodified _VNTDCGHTGIY_ 0 0 0 REV__NID1|p.A683V|1|0.24|ENSG00000116962|chr1:236024150-236024150|G/A|missense_variant REV__NID1|p.A683V|1|0.24|ENSG00000116962|chr1:236024150-236024150|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.264892578125 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 132.07 1 127.22 126.72 127.72 -4.8527 0 0 0 0.23324 1 25367 25367 5.7319 1.4026 1 + 51504 24358 34194 34215 50418 50418 -0.07948887027441742 VNTDCGHTGIY 11 Unmodified _VNTDCGHTGIY_ 0 0 0 REV__NID1|p.A683V|1|0.24|ENSG00000116962|chr1:236024150-236024150|G/A|missense_variant REV__NID1|p.A683V|1|0.24|ENSG00000116962|chr1:236024150-236024150|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2582397460938 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 71.45 1 67.983 67.483 68.483 -3.467 0 0 0 0.22943 1 13542 13542 8.7454 1.4562 1 + 51505 24358 34194 34215 50419 50419 -0.07948887027441742 VNTLDEFASR 10 Unmodified _VNTLDEFASR_ 0 0 0 REV__nc|ENSG00000147082|Q8WWL7-2|CCNB3 REV__nc|ENSG00000147082|Q8WWL7-2|CCNB3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3319702148438 2 576.288202 1150.56185 0.096684 5.5718E-05 2.798 0.0016125 2.8947 0.0016682 576.288836429406 147.29 0.17453 142.61 142.51 142.68 -4.6868 6 4 2 0 0 0 0.48849 1 29236 29236 0.51642 0 1 2275500 + 51506 24088 34195 34216 50420 50420 -0.0074066774163839 VNTRLACYCAF 11 Unmodified _VNTRLACYCAF_ 0 0 0 REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7708129882812 2 630.796826 1259.5791 NaN NaN NaN NaN NaN NaN NaN 162.1 1 157.31 156.81 157.81 -4.7898 0 0 0 0.2321 1 32244 32244 6.6304 0.89852 1 + 51507 22734 34196 34217 50421 50421 -0.04030786731846092 VNTSGDFDT 9 Unmodified _VNTSGDFDT_ 0 0 0 REV__ENSG00000159307|ENST00000360835|SCUBE1 REV__ENSG00000159307|ENST00000360835|SCUBE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7328186035156 2 478.203804 954.393055 0.26609 0.00012725 -2.1654 -0.0010355 -1.8993 -0.00090824 478.2030813003739 72.546 0.4304 68.919 68.661 69.091 -3.6275 18 11 3 0 0 0 0.7906 1 13659 13659 13.042 0 1 853850 + 51508 17367 34197 34218 50422 50422 -0.08596569375129093 VNVKHQIFAP 10 Unmodified _VNVKHQIFAP_ 0 0 0 REV__NEB|p.A553V|1|0.41|ENSG00000183091|chr2:151695594-151695594|G/A|missense_variant REV__NEB|p.A553V|1|0.41|ENSG00000183091|chr2:151695594-151695594|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3118286132812 2 576.82984 1151.64513 0.29674 0.00017117 4.0074 0.0023116 4.3042 0.0024828 577.3329089560763 133.06 0.1022 133.06 132.97 133.07 0 4 2 2 0 0 0 0.87854 1 26303 26303 13.906 1.6654 1 2484800 + 51509 24348 34198 34219 50423 50423 0.07537113496891834 VNVLPKVLGR 10 Unmodified _VNVLPKVLGR_ 0 0 0 ENSG00000166069|ENST00000319669|TMCO5A ENSG00000166069|ENST00000319669|TMCO5A ENSG00000166069|ENST00000319669|TMCO5A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7764892578125 2 547.855858 1093.69716 0.13417 7.3505E-05 3.9786 0.0021797 4.1128 0.0022532 547.856626512319 145.78 0.34413 140.67 140.45 140.79 -5.1108 11 9 2 0 0 0 1.1344 1 28170 28170 0 0 1 2978600 51510 5687 34199 34220 50424 50424 0.15406276910675842 VNVLSLLPKS 10 Unmodified _VNVLSLLPKS_ 0 0 0 REV__ENST00000216264.12_1_22:47081202-47081484:-|nuORF REV__ENST00000216264.12_1_22:47081202-47081484:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5589904785156 3 357.225375 1068.6543 -0.9236 -0.00032993 -1.5523 -0.00055451 -2.4759 -0.00088444 357.2248190963952 14.463 0.27595 13.349 13.123 13.399 -1.1142 11 7 2 0 0 0 0.69673 1 2157 2157 11.518 0 1 301330 + 51511 20013 34200 34221 50425 50425 0.12271462062540195 VNVLSLLPKS 10 Unmodified _VNVLSLLPKS_ 0 0 0 REV__ENST00000216264.12_1_22:47081202-47081484:-|nuORF REV__ENST00000216264.12_1_22:47081202-47081484:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.225375 1068.6543 -0.9236 -0.00032993 -1.5523 -0.00055451 -2.4759 -0.00088444 357.2248190963952 14.463 0.27595 13.349 13.123 13.399 -1.1142 -0.085285 0.00024264 NaN 11.518 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 301330 + 51512 20013 34200 34221 0.12271462062540195 VNVSLIVGI 9 Unmodified _VNVSLIVGI_ 0 0 0 tr|U7STD4|U7STD4_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01018PE=3SV=1 tr|U7STD4|U7STD4_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01018PE=3SV=1 tr|U7STD4|U7STD4_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01018PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.0155334472656 3 305.195416 912.564418 NaN NaN NaN NaN NaN NaN NaN 30.372 1 28.298 27.798 28.798 -2.0743 0 0 0 0.23508 1 5199 5199 0 0 1 51513 26141 34201 34222 50426 50426 0.10463832454024669 VNVVKIKPKK 10 Unmodified _VNVVKIKPKK_ 0 0 0 REV__nc|ENSG00000120694|Q92598-2|HSPH1 REV__nc|ENSG00000120694|Q92598-2|HSPH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3275756835938 2 576.894983 1151.77541 0.039839 2.2983E-05 0.25684 0.00014817 0.29668 0.00017115 577.3966413057777 135.49 0.20505 130.85 130.77 130.97 -4.6399 6 5 2 0 0 0 0.91149 1 26745 26745 1.3295 1.3295 1 1556700 + 51514 15629 34202 34223 50427 50427 0.20559709495887546 VNVVSFFILL 10 Unmodified _VNVVSFFILL_ 0 0 0 REV__TMEM115|p.A114Pfs*29|1|0.36|ENSG00000126062|chr3:50358724-50358724|C/-|frameshift_variant REV__TMEM115|p.A114Pfs*29|1|0.36|ENSG00000126062|chr3:50358724-50358724|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.32177734375 2 575.847167 1149.67978 0.18061 0.000104 -2.6324 -0.0015159 -2.4518 -0.0014119 576.3476301079894 160.66 0.14014 155.86 155.79 155.93 -4.7952 5 3 2 0 0 0 0.75676 1 31948 31948 3.5965 0.31518 1 976630 + 51515 15848 34203 34224 50428 50428 0.11092936585009738 VNVVSFFILL 10 Unmodified _VNVVSFFILL_ 0 0 0 REV__TMEM115|p.A114Pfs*29|1|0.36|ENSG00000126062|chr3:50358724-50358724|C/-|frameshift_variant REV__TMEM115|p.A114Pfs*29|1|0.36|ENSG00000126062|chr3:50358724-50358724|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 575.847167 1149.67978 0.18061 0.000104 -2.6324 -0.0015159 -2.4518 -0.0014119 576.3476301079894 160.66 0.14014 155.86 155.79 155.93 -4.7952 0 0 NaN 3.5965 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 976630 + 51516 15848 34203 34224 0.11092936585009738 VNWKIFTDE 9 Unmodified _VNWKIFTDE_ 0 0 0 REV__nc|ENSG00000082482|O95069-2|KCNK2 REV__nc|ENSG00000082482|O95069-2|KCNK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3358764648438 2 576.290214 1150.56587 0.14227 8.1988E-05 0.39752 0.00022909 0.53979 0.00031108 576.2905752306692 153.36 0.81807 148.6 148.33 149.15 -4.7684 31 22 2 0 0 0 0.74257 1 30587 30587 4.3292 0.38484 1 3659400 + 51517 14438 34204 34225 50429 50429 -0.0033857824789720325 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3927612304688 2 785.389208 1568.76386 0.47068 0.00036967 3.6248 0.0028469 4.0955 0.0032166 785.3938666623781 138.21 0.31058 138.21 138.01 138.32 0 9 8 2 0 0 0 0.66259 1 27454 27454 0 0 1 9487100 + 51518 22537 34205 34226 50430 50430 0.0022314441023354448 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3902587890625 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 133.75 1 133.75 133.25 134.25 0 0 0 0 0.22632 1 26464 26464 0 0 1 + 51519 22537 34205 34226 50431 50431 0.0022314441023354448 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3922119140625 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 142.25 1 142.25 141.75 142.75 0 0 0 0 0.22632 1 28360 28360 0 0 1 + 51520 22537 34205 34226 50432 50432 0.0022314441023354448 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3926391601562 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 145.41 1 140.74 140.24 141.24 -4.6694 0 0 0 0.22632 1 28826 28826 0 0 1 + 51521 22537 34205 34226 50433 50433 0.0022314441023354448 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3893432617188 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 149.34 1 144.61 144.11 145.11 -4.7323 0 0 0 0.22632 1 29661 29661 0 0 1 + 51522 22537 34205 34226 50434 50434 0.0022314441023354448 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3915405273438 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 158.08 1 153.29 152.79 153.79 -4.7952 0 0 0 0.22632 1 31436 31436 0.00056442 0 1 + 51523 22537 34205 34226 50435 50435 0.0022314441023354448 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3901977539062 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 82.17 1 78.296 77.796 78.796 -3.8736 0 0 0 0.23634 1 15608 15608 3.2813 2.088 1 + 51524 22537 34205 34226 50436 50436 0.0022314441023354448 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3917846679688 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 96.076 1 91.885 91.385 92.385 -4.1911 0 0 0 0.23634 1 18341 18341 3.2813 1.9518 1 + 51525 22537 34205 34226 50437 50437 0.0022314441023354448 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3909912109375 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 108.96 1 104.51 104.01 105.01 -4.4518 0 0 0 0.23698 1 20911 20911 1.4819 0.28856 1 + 51526 22537 34205 34226 50438 50438 0.0022314441023354448 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3909301757812 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 138.65 1 133.69 133.19 134.19 -4.952 0 0 0 0.22632 1 26663 26663 0 0 1 + 51527 22537 34205 34226 50439 50439 0.0022314441023354448 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.390625 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 140.4 1 135.41 134.91 135.91 -4.9877 0 0 0 0.22632 1 27023 27023 0 0 1 + 51528 22537 34205 34226 50440 50440 0.0022314441023354448 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3856811523438 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 146.78 1 141.67 141.17 142.17 -5.1108 0 0 0 0.23698 1 28393 28393 1.4819 0.15237 1 + 51529 22537 34205 34226 50441 50441 0.0022314441023354448 VNWRFYMFFLF 11 Unmodified _VNWRFYMFFLF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3893432617188 2 785.389208 1568.76386 NaN NaN NaN NaN NaN NaN NaN 129.8 1 125.03 124.53 125.53 -4.7725 0 0 0 0.22632 1 24974 24974 0.094841 0.087559 1 + 51530 22537 34205 34226 50442 50442 0.0022314441023354448 VNYAMHFY 8 Unmodified _VNYAMHFY_ 0 0 0 REV__nc|ENSG00000128973|Q9NWW5-2|CLN6 REV__nc|ENSG00000128973|Q9NWW5-2|CLN6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2716674804688 2 522.73402 1043.45349 -0.13906 -7.2689E-05 -4.0674 -0.0021262 -4.2065 -0.0021989 523.2332978173703 143.42 0.18243 138.76 138.64 138.83 -4.656 7 4 2 0 0 0 0.89646 1 28356 28356 0.12286 0 1 12790000 + 51531 15942 34206 34227 50443 50443 -0.06650130525758868 VNYGVIYHT 9 Unmodified _VNYGVIYHT_ 0 0 0 REV__RPN1|p.L336V|1|0.33|ENSG00000163902|chr3:128629981-128629981|G/C|missense_variant REV__RPN1|p.L336V|1|0.33|ENSG00000163902|chr3:128629981-128629981|G/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2720947265625 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 173.36 1 173.36 172.86 173.86 0 0 0 0 0.19684 1 35845 35845 0.073264 0 1 + 51532 24580 34207 34228 50444 50444 -0.0005883007381726202 VNYIKEDV 8 Unmodified _VNYIKEDV_ 0 0 0 REV__tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1 REV__tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2587585449219 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 172.51 1 167.61 167.11 168.11 -4.8977 0 0 0 0.21452 1 34217 34217 13.508 0.97634 1 + 51533 25335 34208 34229 50445 50445 0.012100613149868877 VNYYLHQPQV 10 Unmodified _VNYYLHQPQV_ 0 0 0 nc|ENSG00000056291|Q9Y5X5|NPFFR2;ENSG00000056291|ENST00000308744|NPFFR2;nc|ENSG00000056291|Q9Y5X5-3|NPFFR2;NPFFR2|p.R458Efs*10|1|0.33|ENSG00000056291|chr4:72147610-72147610|A/-|frameshift_variant nc|ENSG00000056291|Q9Y5X5|NPFFR2 nc|ENSG00000056291|Q9Y5X5|NPFFR2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7784423828125 2 630.822212 1259.62987 NaN NaN NaN NaN NaN NaN NaN 91.489 1 87.394 86.894 87.894 -4.0946 0 0 0 0.22588 1 17430 17430 10.074 1.3285 1 51534 12219 34209 34230 50446 50446 0.010442019090305621 VNYYYFLFV 9 Unmodified _VNYYYFLFV_ 0 0 0 tr|U7STI3|U7STI3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01068PE=4SV=1 tr|U7STI3|U7STI3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01068PE=4SV=1 tr|U7STI3|U7STI3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01068PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 409.8912353515625 3 409.874342 1226.6012 NaN NaN NaN NaN NaN NaN NaN 9.5652 1 8.771 8.271 9.271 -0.79424 0 0 0 0.23508 1 1115 1115 0 0 1 51535 26151 34210 34231 50447 50447 -0.003039157201328635 VPAARAPGMQP 11 Unmodified _VPAARAPGMQP_ 0 0 0 ENST00000584573.5_1_17:61699921-61700077:+|nuORF ENST00000584573.5_1_17:61699921-61700077:+|nuORF ENST00000584573.5_1_17:61699921-61700077:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7921142578125 2 547.792401 1093.57025 NaN NaN NaN NaN NaN NaN NaN 167.54 1 162.59 162.09 163.09 -4.948 0 0 0 0.224 1 32968 32968 13.042 5.1323 1 51536 11524 34211 34232 50448 50448 0.02720607694004684 VPAEEGGGGLA 11 Unmodified _VPAEEGGGGLA_ 0 0 0 ENST00000426882.5_1_6:30294318-30294846:-|nuORF ENST00000426882.5_1_6:30294318-30294846:-|nuORF ENST00000426882.5_1_6:30294318-30294846:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.73773193359375 2 478.737814 955.461075 NaN NaN NaN NaN NaN NaN NaN 32.541 1 30.393 29.893 30.893 -2.1483 0 0 0 0.16797 1 5641 5641 25.399 5.9603 1 51537 9733 34212 34233 50449 50449 -0.018436997244634767 VPAEKSDP 8 Unmodified _VPAEKSDP_ 0 0 0 REV__nc|ENSG00000129422|Q9ULD2-2|MTUS1 REV__nc|ENSG00000129422|Q9ULD2-2|MTUS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 421.3356628417969 2 421.71635 841.418148 0.12825 5.4086E-05 -0.072145 -3.0425E-05 0.056108 2.3662E-05 421.7163193551174 28.346 0.59264 28.346 28.077 28.67 0 23 16 2 0 0 0 1.0095 1 5062 5062 10.183 3.8293 1 785450 + 51538 15961 34213 34234 50450 50450 -0.008904697819048124 VPAEKSDP 8 Unmodified _VPAEKSDP_ 0 0 0 REV__nc|ENSG00000129422|Q9ULD2-2|MTUS1 REV__nc|ENSG00000129422|Q9ULD2-2|MTUS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 421.3219299316406 2 421.71635 841.418148 0.33541 0.00014145 -0.039957 -1.685E-05 0.29545 0.0001246 421.71629418005097 30.288 0.77146 28.172 27.735 28.507 -2.1167 31 21 2 0 0 0 0.97994 1 5522 5522 10.183 4.423 1 713780 + 51539 15961 34213 34234 50451 50451 -0.008904697819048124 VPAEKSDP 8 Unmodified _VPAEKSDP_ 0 0 0 REV__nc|ENSG00000129422|Q9ULD2-2|MTUS1 REV__nc|ENSG00000129422|Q9ULD2-2|MTUS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 421.322509765625 2 421.71635 841.418148 0.23896 0.00010077 -0.034064 -1.4365E-05 0.2049 8.6408E-05 421.71629606182455 30.357 0.56242 28.282 27.901 28.464 -2.0743 21 15 2 0 0 0 1.0095 1 5165 5165 10.183 7.6059 1 462300 + 51540 15961 34213 34234 50452 50452 -0.008904697819048124 VPAIVKKPI 9 Unmodified _VPAIVKKPI_ 0 0 0 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 322.2821960449219 3 322.223306 963.648088 NaN NaN NaN NaN NaN NaN NaN 14.726 1 13.612 13.112 14.112 -1.1142 0 0 0 0.23508 1 2226 2226 0 0 1 + 51541 19641 34214 34235 50453 50453 0.1648098862168581 VPAIVKKPI 9 Unmodified _VPAIVKKPI_ 0 0 0 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 322.2224426269531 3 322.223306 963.648088 NaN NaN NaN NaN NaN NaN NaN 19.729 1 18.094 17.594 18.594 -1.6351 0 0 0 0.23508 1 2996 2996 0 0 1 + 51542 19641 34214 34235 50454 50454 0.1648098862168581 VPAIVKKPI 9 Unmodified _VPAIVKKPI_ 0 0 0 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 322.2017822265625 3 322.223306 963.648088 NaN NaN NaN NaN NaN NaN NaN 131.49 1 126.72 126.22 127.22 -4.7725 0 0 0 0.23508 1 25312 25312 0 0 1 + 51543 19641 34214 34235 50455 50455 0.1648098862168581 VPAIVKKPI 9 Unmodified _VPAIVKKPI_ 0 0 0 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 322.2217712402344 3 322.223306 963.648088 NaN NaN NaN NaN NaN NaN NaN 133.67 1 128.85 128.35 129.35 -4.8175 0 0 0 0.23508 1 25727 25727 0 0 1 + 51544 19641 34214 34235 50456 50456 0.1648098862168581 VPAKKITA 8 Unmodified _VPAKKITA_ 0 0 0 ENSG00000188846|ENST00000396203|RPL14 ENSG00000188846|ENST00000396203|RPL14 ENSG00000188846|ENST00000396203|RPL14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.2601623535156 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 12.71 1 11.7 11.2 12.2 -1.0098 0 0 0 0.21486 1 1789 1789 0.79363 0 1 51545 7203 34215 34236 50457 50457 0.10743580628070504 VPAKVRARRV 10 Unmodified _VPAKVRARRV_ 0 0 0 ENST00000455062.2_1_7:74197704-74203407:+|nuORF;ENST00000423083.1_1_7:72644023-72649727:+|nuORF ENST00000455062.2_1_7:74197704-74203407:+|nuORF ENST00000455062.2_1_7:74197704-74203407:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3226928710938 2 576.377823 1150.74109 NaN NaN NaN NaN NaN NaN NaN 178.41 1 173.5 173 174 -4.9088 0 0 0 2.8426 1 35589 35589 0.69767 0.69767 1 51546 9688 34216 34237 50458 50458 0.1717530612761493 VPALGAPH 8 Unmodified _VPALGAPH_ 0 0 0 REV__LAMA5|p.L1522Wfs*35|1|0.42|ENSG00000130702|chr20:62328329-62328329|G/-|frameshift_variant REV__LAMA5|p.L1522Wfs*35|1|0.42|ENSG00000130702|chr20:62328329-62328329|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.218017578125 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 155.13 1 150.35 149.85 150.85 -4.7791 0 0 0 0.2396 1 30837 30837 0.12286 0 1 + 51547 16027 34217 34238 50459 50459 0.03337878871366229 VPAPGRALPRT 11 Unmodified _VPAPGRALPRT_ 0 0 0 ENST00000552885.2_1_12:80328990-80329323:+|nuORF ENST00000552885.2_1_12:80328990-80329323:+|nuORF ENST00000552885.2_1_12:80328990-80329323:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.8894348144531 3 378.896252 1133.66693 NaN NaN NaN NaN NaN NaN NaN 10.159 1 9.3645 8.8645 9.8645 -0.79424 0 0 0 0.23698 1 1245 1245 0 0 1 51548 11200 34218 34239 50460 50460 0.10543918245434725 VPAQRCFV 8 Unmodified _VPAQRCFV_ 0 0 0 CON__ENSEMBL:ENSBTAP00000023055 CON__ENSEMBL:ENSBTAP00000023055 CON__ENSEMBL:ENSBTAP00000023055 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2449951171875 2 460.244555 918.474557 NaN NaN NaN NaN NaN NaN NaN 33.619 1 31.301 30.801 31.801 -2.3175 0 0 0 0.21486 1 6151 6151 6.3541 0 1 + 51549 642 34219 34240 50461 50461 0.012058795737743822 VPAQSFKTARR 11 Unmodified _VPAQSFKTARR_ 0 0 0 ENST00000359543.7_1_16:10637500-10674517:-|nuORF ENST00000359543.7_1_16:10637500-10674517:-|nuORF ENST00000359543.7_1_16:10637500-10674517:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7547607421875 2 630.862203 1259.70985 NaN NaN NaN NaN NaN NaN NaN 129.26 1 129.26 128.76 129.76 0 0 0 0 0.22632 1 25534 25534 0.00056442 0 1 51550 9002 34220 34241 50462 50462 0.09038688302894116 VPARLEYKKR 10 Unmodified _VPARLEYKKR_ 0 0 0 REV__ENST00000542939.1_1_12:118576827-118582605:+|nuORF REV__ENST00000542939.1_1_12:118576827-118582605:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7772827148438 2 630.382771 1258.75099 0.42922 0.00027057 -3.0514 -0.0019236 -2.6222 -0.001653 630.3819077024009 162.22 0.20772 157.07 156.96 157.16 -5.1438 12 5 3 0 0 0 0.90598 1 31493 31493 5.7319 0 1 2669300 + 51551 14527 34221 34242 50463 50463 0.13196449342353844 VPARLPWA 8 Unmodified _VPARLPWA_ 0 0 0 ENST00000415229.6_1_11:62105042-62105435:+|nuORF ENST00000415229.6_1_11:62105042-62105435:+|nuORF ENST00000415229.6_1_11:62105042-62105435:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 455.5689392089844 2 455.268887 908.523222 NaN NaN NaN NaN NaN NaN NaN 14.73 1 13.616 13.116 14.116 -1.1142 0 0 0 0.2396 1 2227 2227 0.0082765 0 1 51552 9611 34222 34243 50464 50464 0.06530116205181002 VPASQSRPHPQ 11 Unmodified _VPASQSRPHPQ_ 0 0 0 ENST00000423571.6_1_5:176737683-176738460:-|nuORF ENST00000423571.6_1_5:176737683-176738460:-|nuORF ENST00000423571.6_1_5:176737683-176738460:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2937622070312 2 602.315086 1202.61562 NaN NaN NaN NaN NaN NaN NaN 166.5 1 161.55 161.05 162.05 -4.9484 0 0 0 0.22085 1 32637 32637 13.906 2.4113 1 51553 9691 34223 34244 50465 50465 0.022415494807546565 VPASTEPAA 9 Unmodified _VPASTEPAA_ 0 0 0 REV__ENSG00000006047|ENST00000007699|YBX2 REV__ENSG00000006047|ENST00000007699|YBX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 421.3221435546875 2 421.71635 841.418148 0.30464 0.00012847 0.037098 1.5645E-05 0.34174 0.00014412 421.716251122391 30.301 0.56017 28.408 27.996 28.556 -1.8928 24 15 2 0 0 0 0.76082 1 5145 5145 19.439 11.529 1 809500 + 51554 13867 34224 34245 50466 50466 -0.008904697819161811 VPCACVAG 8 Unmodified _VPCACVAG_ 0 0 0 REV__ENST00000530897.1_1_11:1331005-1331308:+|nuORF REV__ENST00000530897.1_1_11:1331005-1331308:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2014465332031 2 360.164385 718.314217 NaN NaN NaN NaN NaN NaN NaN 132.76 1 132.76 132.26 133.26 0 0 0 0 0.21486 1 26250 26250 2.8892 0 1 + 51555 22761 34225 34246 50467 50467 -0.056207914147762494 VPCIPSEVEI 10 Unmodified _VPCIPSEVEI_ 0 0 0 chr19:41756959-41758061|166|203.57|0.0|24.28|+|1|CEACAM6,None|2 chr19:41756959-41758061|166|203.57|0.0|24.28|+|1|CEACAM6,None|2 chr19:41756959-41758061|166|203.57|0.0|24.28|+|1|CEACAM6,None|2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.788818359375 2 543.281 1084.54745 0.26052 0.00014154 -0.53178 -0.0002889 -0.27126 -0.00014737 543.280715976422 98.21 0.94145 94.078 93.429 94.37 -4.1326 43 26 2 0 0 0 0.33163 1 19333 19333 0.84494 0 1 1832200 51556 544 34226 34247 50468 50468 0.00855543785860391 VPCLASKG 8 Unmodified _VPCLASKG_ 0 0 0 REV__ENST00000391878.6_1_1:223968135-223968339:-|nuORF REV__ENST00000391878.6_1_1:223968135-223968339:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7126159667969 2 387.712556 773.41056 -0.039003 -1.5122E-05 0.27704 0.00010741 0.23804 9.2289E-05 387.71258231601615 32.286 0.78275 30.056 29.724 30.507 -2.2305 54 21 3 0 0 0 8448 1 5934 5934 0.25148 0.18749 1 3587300 + 51557 21204 34227 34248 50469 50469 0.014790994168379257 VPCLASKG 8 Unmodified _VPCLASKG_ 0 0 0 REV__ENST00000391878.6_1_1:223968135-223968339:-|nuORF REV__ENST00000391878.6_1_1:223968135-223968339:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7125549316406 2 387.712556 773.41056 -0.18287 -7.0902E-05 0.2635 0.00010216 0.080624 3.1259E-05 387.71265209804034 32.267 0.83207 30.119 29.795 30.627 -2.1483 52 23 4 0 0 0 8448 1 5637 5637 0.063987 0 1 2915400 + 51558 21204 34227 34248 50470 50470 0.014790994168379257 VPCNYLEPVE 10 Unmodified _VPCNYLEPVE_ 0 0 0 nc|ENSG00000116701|P19878-2|NCF2;nc|ENSG00000116701|P19878-4|NCF2;nc|ENSG00000116701|P19878-3|NCF2;ENSG00000116701|ENST00000367535|NCF2 nc|ENSG00000116701|P19878-2|NCF2 nc|ENSG00000116701|P19878-2|NCF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7126159667969 3 388.18648 1161.53761 -0.17485 -6.7875E-05 1.4084 0.00054674 1.2336 0.00047887 388.1870268197506 32.165 0.27156 30.017 29.9 30.171 -2.1483 10 7 2 0 0 0 0.89335 1 5590 5590 12.873 3.4895 1 234420 51559 2944 34228 34249 50471 50471 -0.0366964421953071 VPCPHPGS 8 Unmodified _VPCPHPGS_ 0 0 0 REV__ENSG00000283787|ENST00000640310|PRR33 REV__ENSG00000283787|ENST00000640310|PRR33 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 397.20526123046875 2 397.186706 792.358859 NaN NaN NaN NaN NaN NaN NaN 59.033 1 56.123 55.623 56.623 -2.9105 0 0 0 0.21486 1 11342 11342 5.2307 2.6532 1 + 51560 19962 34229 34250 50472 50472 -0.04562644277075378 VPCPHPGS 8 Unmodified _VPCPHPGS_ 0 0 0 REV__ENSG00000283787|ENST00000640310|PRR33 REV__ENSG00000283787|ENST00000640310|PRR33 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 397.2193603515625 2 397.186706 792.358859 NaN NaN NaN NaN NaN NaN NaN 68.382 1 64.992 64.492 65.492 -3.3903 0 0 0 0.21486 1 12907 12907 5.7604 0 1 + 51561 19962 34229 34250 50473 50473 -0.04562644277075378 VPCSRHCP 8 Unmodified _VPCSRHCP_ 0 0 0 REV__ENST00000513868.6_1_8:129001487-129082505:+|nuORF REV__ENST00000513868.6_1_8:129001487-129082505:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 300.1385803222656 3 300.138919 897.394927 NaN NaN NaN NaN NaN NaN NaN 107.39 1 107.39 106.89 107.89 0 0 0 0 0.21486 1 21117 21117 0.45834 0 1 + 51562 22572 34230 34251 50474 50474 -0.05787510371874305 VPCVPVPRA 9 Unmodified _VPCVPVPRA_ 0 0 0 ENST00000451653.5_2_3:42593729-42593828:-|nuORF ENST00000451653.5_2_3:42593729-42593828:-|nuORF ENST00000451653.5_2_3:42593729-42593828:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.13690185546875 3 313.181112 936.521507 -0.61416 -0.00019234 0.50603 0.00015848 -0.10813 -3.3863E-05 313.1812031786789 41.005 0.95013 38.516 38.006 38.957 -2.4896 48 26 2 0 0 0 0.8825 1 7323 7323 2.7352 0.89096 1 1385800 51563 9981 34231 34252 50475 50475 0.050707391249147804 VPCVPVPRA 9 Unmodified _VPCVPVPRA_ 0 0 0 ENST00000451653.5_2_3:42593729-42593828:-|nuORF ENST00000451653.5_2_3:42593729-42593828:-|nuORF ENST00000451653.5_2_3:42593729-42593828:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 313.181112 936.521507 -0.38047 -0.00011916 0.29237 9.1565E-05 -0.088103 -2.7592E-05 313.1811513656542 38.459 0.85107 38.459 38.106 38.957 0 0.0087806 4E-05 NaN 2.7352 39 23 2 NaN NaN NaN NaN 0 NaN NaN 0 877580 51564 9981 34231 34252 0.050707391249147804 VPCVPVPRA 9 Unmodified _VPCVPVPRA_ 0 0 0 ENST00000451653.5_2_3:42593729-42593828:-|nuORF ENST00000451653.5_2_3:42593729-42593828:-|nuORF ENST00000451653.5_2_3:42593729-42593828:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 313.181112 936.521507 -0.48157 -0.00015082 0.38213 0.00011968 -0.099443 -3.1144E-05 313.1811787046588 41.078 1.1161 38.443 37.901 39.017 -2.6348 -0.0070237 0.00012433 NaN 2.7352 53 31 2 NaN NaN NaN NaN 0 NaN NaN 0 1545300 51565 9981 34231 34252 0.050707391249147804 VPCVPVPRA 9 Unmodified _VPCVPVPRA_ 0 0 0 ENST00000451653.5_2_3:42593729-42593828:-|nuORF ENST00000451653.5_2_3:42593729-42593828:-|nuORF ENST00000451653.5_2_3:42593729-42593828:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 313.181112 936.521507 -0.028273 -8.8545E-06 -0.22616 -7.083E-05 -0.25444 -7.9684E-05 313.18104131992453 40.923 1.0535 38.383 37.887 38.94 -2.5398 -0.066971 -0.00044718 NaN 2.7352 56 29 3 NaN NaN NaN NaN 0 NaN NaN 0 1168700 51566 9981 34231 34252 0.050707391249147804 VPDLCVGF 8 Unmodified _VPDLCVGF_ 0 0 0 REV__MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant REV__MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.25115966796875 2 425.212389 848.410226 NaN NaN NaN NaN NaN NaN NaN 119.53 1 115.01 114.51 115.51 -4.5221 0 0 0 0.22722 1 23572 23572 0.62683 0.37535 1 + 51567 13863 34232 34253 50476 50476 -0.020043203030240875 VPDNPTRK 8 Unmodified _VPDNPTRK_ 0 0 0 KIAA0408|p.K514R|1|0.05|ENSG00000189367|chr6:127446778-127446778|T/C|missense_variant KIAA0408|p.K514R|1|0.05|ENSG00000189367|chr6:127446778-127446778|T/C|missense_variant KIAA0408|p.K514R|1|0.05|ENSG00000189367|chr6:127446778-127446778|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2588195800781 2 463.756341 925.498129 0.077437 3.5912E-05 -0.071315 -3.3073E-05 0.006122 2.8391E-06 463.7562692718083 36.573 1.1415 34.225 33.546 34.687 -2.3479 81 32 4 0 0 0 0.66265 1 6485 6485 18.135 3.2967 1 15063000 51568 11992 34233 34254 50477 50477 0.03240016611948704 VPDNPTRK 8 Unmodified _VPDNPTRK_ 0 0 0 KIAA0408|p.K514R|1|0.05|ENSG00000189367|chr6:127446778-127446778|T/C|missense_variant KIAA0408|p.K514R|1|0.05|ENSG00000189367|chr6:127446778-127446778|T/C|missense_variant KIAA0408|p.K514R|1|0.05|ENSG00000189367|chr6:127446778-127446778|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 463.756341 925.498129 0.15174 7.037E-05 0.19556 9.0692E-05 0.3473 0.00016106 463.75620752196284 34.317 0.96498 34.317 33.76 34.725 0 0.10549 2.0705E-05 NaN 18.135 80 27 4 NaN NaN NaN NaN 0 NaN NaN 0 11076000 51569 11992 34233 34254 0.03240016611948704 VPDNPTRK 8 Unmodified _VPDNPTRK_ 0 0 0 KIAA0408|p.K514R|1|0.05|ENSG00000189367|chr6:127446778-127446778|T/C|missense_variant KIAA0408|p.K514R|1|0.05|ENSG00000189367|chr6:127446778-127446778|T/C|missense_variant KIAA0408|p.K514R|1|0.05|ENSG00000189367|chr6:127446778-127446778|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 463.756341 925.498129 -0.49168 -0.00022802 0.45618 0.00021156 -0.035495 -1.6461E-05 463.7565138595648 36.601 1.087 34.137 33.522 34.609 -2.4645 -0.07417 0.00026244 NaN 18.135 70 30 3 NaN NaN NaN NaN 0 NaN NaN 0 13799000 51570 11992 34233 34254 0.03240016611948704 VPDNPTRK 8 Unmodified _VPDNPTRK_ 0 0 0 KIAA0408|p.K514R|1|0.05|ENSG00000189367|chr6:127446778-127446778|T/C|missense_variant KIAA0408|p.K514R|1|0.05|ENSG00000189367|chr6:127446778-127446778|T/C|missense_variant KIAA0408|p.K514R|1|0.05|ENSG00000189367|chr6:127446778-127446778|T/C|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 463.756341 925.498129 0.2694 0.00012494 0.02008 9.3122E-06 0.28948 0.00013425 463.75616054714186 36.503 1.2744 34.166 33.5 34.774 -2.3375 -0.045122 -0.00014205 NaN 18.135 85 35 4 NaN NaN NaN NaN 0 NaN NaN 0 11185000 51571 11992 34233 34254 0.03240016611948704 VPDPPNDLRK 10 Unmodified _VPDPPNDLRK_ 0 0 0 ENST00000505883.1_1_3:129156140-129158676:-|nuORF;ENST00000509587.1_1_3:129152915-129158676:-|nuORF;nc|ENSG00000129071|O95243-6|MBD4;MBD4|p.E314Kfs*4|1|0.74|ENSG00000129071|chr3:129436705-129436705|T/-|frameshift_variant;MBD4|p.K313Rfs*13|2|0.15|ENSG00000129071|chr3:129436705-129436706|TT/-|frameshift_variant;MBD4|p.P430Hfs*61|1|0.1|ENSG00000129071|chr3:129433972-129433972|G/-|frameshift_variant;nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4 ENST00000505883.1_1_3:129156140-129158676:-|nuORF ENST00000505883.1_1_3:129156140-129158676:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3151245117188 2 575.814387 1149.61422 0.012943 7.453E-06 -0.67523 -0.00038881 -0.66228 -0.00038135 576.3158370404614 111.61 0.6596 107.12 106.72 107.38 -4.4915 31 18 2 0 0 0 0.48672 1 21431 21431 25.399 12.868 1 2502900 51572 3553 34234 34255 50478 50478 0.04539915391978866 VPDQVRGC 8 Unmodified _VPDQVRGC_ 0 0 0 ENST00000392144.5_1_19:38145999-38146149:-|nuORF ENST00000392144.5_1_19:38145999-38146149:-|nuORF ENST00000392144.5_1_19:38145999-38146149:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2283935546875 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 112.87 1 112.87 112.37 113.37 0 0 0 0 0.23664 1 22198 22198 3.2813 0 1 51573 9370 34235 34256 50479 50479 -0.023875877025943737 VPDSLILPLLI 11 Unmodified _VPDSLILPLLI_ 0 0 0 nc|ENSG00000157554|P11308-6|ERG;ENST00000468474.5_1_21:39772286-39947633:-|nuORF nc|ENSG00000157554|P11308-6|ERG nc|ENSG00000157554|P11308-6|ERG MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 596.6677856445312 2 596.881207 1191.74786 NaN NaN NaN NaN NaN NaN NaN 179.53 1 174.62 174.12 175.12 -4.9114 0 0 0 0.22632 1 35823 35823 0 0 1 51574 10169 34236 34257 50480 50480 0.15965761445022508 VPEEAERT 8 Unmodified _VPEEAERT_ 0 0 0 ENST00000278823.6_1_11:62369115-62369208:-|nuORF ENST00000278823.6_1_11:62369115-62369208:-|nuORF ENST00000278823.6_1_11:62369115-62369208:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2471923828125 2 465.729989 929.445425 0.33976 0.00015824 0.38959 0.00018144 0.72935 0.00033968 465.7301093608653 106.54 0.98183 106.54 106.02 107 0 69 27 3 0 0 0 0.41341 1 21012 21012 42.095 0 1 10861000 51575 8434 34237 34258 50481 50481 -0.022119862415138414 VPEEAERT 8 Unmodified _VPEEAERT_ 0 0 0 ENST00000278823.6_1_11:62369115-62369208:-|nuORF ENST00000278823.6_1_11:62369115-62369208:-|nuORF ENST00000278823.6_1_11:62369115-62369208:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 465.729989 929.445425 -0.39735 -0.00018506 0.075221 3.5032E-05 -0.32213 -0.00015002 465.7299745841369 110.82 0.83277 106.4 105.92 106.75 -4.4231 -0.068568 -1.5888E-06 NaN 42.095 51 23 3 NaN NaN NaN NaN 0 NaN NaN 0 4995800 51576 8434 34237 34258 -0.022119862415138414 VPEEGLET 8 Unmodified _VPEEGLET_ 0 0 0 RPP25L|p.P140Lfs*36|1|0.21|ENSG00000164967|chr9:34610878-34610878|G/-|frameshift_variant RPP25L|p.P140Lfs*36|1|0.21|ENSG00000164967|chr9:34610878-34610878|G/-|frameshift_variant RPP25L|p.P140Lfs*36|1|0.21|ENSG00000164967|chr9:34610878-34610878|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.215576171875 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 162 1 157.21 156.71 157.71 -4.7898 0 0 0 0.21486 1 32221 32221 9.3474 0 1 51577 25623 34238 34259 50482 50482 -0.028581933643749835 VPEEIYRY 8 Unmodified _VPEEIYRY_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1;LRRC1|p.G65Dfs*14|1|0.41|ENSG00000137269|chr6:53842141-53842141|T/-|frameshift_variant;nc|ENSG00000137269|Q9BTT6-2|LRRC1;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB;SCRIB|p.A803Pfs*121|1|0.21|ENSG00000180900|chr8:143805375-143805375|C/-|frameshift_variant;SCRIB|p.T966Pfs*9|4|0.48|ENSG00000180900|chr8:143804682-143804682|G/-|frameshift_variant ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000180900|Q14160|SCRIB nc|ENSG00000180900|Q14160|SCRIB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.10406494140625 3 356.850197 1067.52876 -2.294 -0.00081861 -0.2852 -0.00010177 -2.5792 -0.00092038 356.8501593679846 12.906 0.13586 11.785 11.721 11.857 -1.1206 5 3 2 0 0 0 1.0281 1 1596 1596 0.45834 0 1 68517 51578 6699;4076 34239 34260 50483 50483 -0.002302497936625514 VPEEIYRY 8 Unmodified _VPEEIYRY_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1;LRRC1|p.G65Dfs*14|1|0.41|ENSG00000137269|chr6:53842141-53842141|T/-|frameshift_variant;nc|ENSG00000137269|Q9BTT6-2|LRRC1;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB;SCRIB|p.A803Pfs*121|1|0.21|ENSG00000180900|chr8:143805375-143805375|C/-|frameshift_variant;SCRIB|p.T966Pfs*9|4|0.48|ENSG00000180900|chr8:143804682-143804682|G/-|frameshift_variant ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000180900|Q14160|SCRIB nc|ENSG00000180900|Q14160|SCRIB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 356.850197 1067.52876 -0.92421 -0.00032981 -1.9587 -0.00069895 -2.8829 -0.0010288 356.84969158161203 12.884 0.27403 11.874 11.695 11.969 -1.0098 0.044375 -0.0014523 NaN 0.45834 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 166940 51579 6699;4076 34239 34260 -0.002302497936625514 VPEEVTSTV 9 Unmodified _VPEEVTSTV_ 0 0 0 ENST00000506410.1_1_4:68378087-68379960:-|nuORF;nc|ENSG00000145241|Q03188-2|CENPC;CENPC|p.T575Lfs*21|1|0.35|ENSG00000145241|chr4:67508995-67508995|T/-|frameshift_variant;ENST00000510189.5_1_4:68359569-68411187:-|nuORF;ENSG00000145241|ENST00000273853|CENPC ENST00000506410.1_1_4:68378087-68379960:-|nuORF ENST00000506410.1_1_4:68378087-68379960:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.23321533203125 2 480.747847 959.481142 -0.02998 -1.4413E-05 -0.12812 -6.1594E-05 -0.1581 -7.6007E-05 480.7477271767692 79.929 1.713 76.124 75.439 77.152 -3.8048 127 48 4 0 0 0 0.55979 1 15072 15072 15.847 1.0089 1 74106000 51580 482 34240 34261 50484 50484 -0.00021948784512915154 VPEEVTSTV 9 Unmodified _VPEEVTSTV_ 0 0 0 ENST00000506410.1_1_4:68378087-68379960:-|nuORF;nc|ENSG00000145241|Q03188-2|CENPC;CENPC|p.T575Lfs*21|1|0.35|ENSG00000145241|chr4:67508995-67508995|T/-|frameshift_variant;ENST00000510189.5_1_4:68359569-68411187:-|nuORF;ENSG00000145241|ENST00000273853|CENPC ENST00000506410.1_1_4:68378087-68379960:-|nuORF ENST00000506410.1_1_4:68378087-68379960:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25054931640625 2 480.747847 959.481142 -0.17367 -8.349E-05 0.011545 5.5501E-06 -0.16212 -7.794E-05 480.74778982841497 79.771 1.6057 76.095 75.548 77.153 -3.676 122 45 4 0 0 0 0.25702 1 15125 15125 34.102 0 1 94578000 51581 482 34240 34261 50485 50485 -0.00021948784512915154 VPEHSAPI 8 Unmodified _VPEHSAPI_ 0 0 0 ENSG00000141034|ENST00000268719|GID4 ENSG00000141034|ENST00000268719|GID4 ENSG00000141034|ENST00000268719|GID4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.23602294921875 2 425.226885 848.439217 NaN NaN NaN NaN NaN NaN NaN 58.074 1 55.163 54.663 55.663 -2.9105 0 0 0 0.21486 1 11149 11149 6.3541 0 1 51582 4344 34241 34262 50486 50486 0.0089354031762241 VPEKKSLRFV 10 Unmodified _VPEKKSLRFV_ 0 0 0 tr|U7T2Z9|U7T2Z9_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00523PE=4SV=1 tr|U7T2Z9|U7T2Z9_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00523PE=4SV=1 tr|U7T2Z9|U7T2Z9_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00523PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2894897460938 2 601.866423 1201.71829 NaN NaN NaN NaN NaN NaN NaN 165.83 1 165.83 165.33 166.33 0 0 0 0 0.22588 1 33701 33701 11.495 1.4208 1 51583 26380 34242 34263 50487 50487 0.1255024221950407 VPEKMVVI 8 Unmodified _VPEKMVVI_ 0 0 0 DLD|p.L245*|1|0.3|ENSG00000091140|chr7:107915551-107915551|T/-|frameshift_variant;nc|ENSG00000091140|P09622-2|DLD;nc|ENSG00000091140|P09622-3|DLD;ENSG00000091140|ENST00000205402|DLD DLD|p.L245*|1|0.3|ENSG00000091140|chr7:107915551-107915551|T/-|frameshift_variant DLD|p.L245*|1|0.3|ENSG00000091140|chr7:107915551-107915551|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23809814453125 2 457.772614 913.530675 NaN NaN NaN NaN NaN NaN NaN 114.28 1 109.96 109.46 110.46 -4.3136 0 0 0 0.21486 1 22013 22013 9.3474 0 1 51584 843 34243 34264 50488 50488 0.07045087690585206 VPEKVIIEEI 10 Unmodified _VPEKVIIEEI_ 0 0 0 REV__tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1 REV__tr|U7SM47|U7SM47_FUSNUUDP-3-O-acyl-N-acetylglucosaminedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.2313232421875 3 390.232307 1167.67509 NaN NaN NaN NaN NaN NaN NaN 69.574 1 66.183 65.683 66.683 -3.3903 0 0 0 0.22588 1 13161 13161 3.8763 1.1411 1 + 51585 24956 34244 34265 50489 50489 0.0979600765158466 VPEKWTTPQ 9 Unmodified _VPEKWTTPQ_ 0 0 0 nc|ENSG00000103313|O15553-3|MEFV;nc|ENSG00000103313|O15553-1|MEFV;ENSG00000103313|ENST00000219596|MEFV nc|ENSG00000103313|O15553-3|MEFV nc|ENSG00000103313|O15553-3|MEFV MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.796142578125 2 543.284931 1084.55531 0.29657 0.00016112 4.1073 0.0022314 4.4039 0.0023926 543.7877449572395 145.11 0.55681 140.44 140.13 140.68 -4.6694 35 15 3 0 0 0 0.80521 1 28810 28810 10.824 7.5426 1 2581800 51586 2181 34245 34266 50490 50490 0.0164143909764789 VPELRVKRR 9 Unmodified _VPELRVKRR_ 0 0 0 REV__nc|ENSG00000131584|Q96P50-4|ACAP3 REV__nc|ENSG00000131584|Q96P50-4|ACAP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3360595703125 2 576.869831 1151.72511 0.21984 0.00012682 -0.15285 -8.8173E-05 0.066995 3.8648E-05 576.86938841655 161.97 0.14046 157.18 157.1 157.24 -4.7898 5 3 2 0 0 0 0.87974 1 32206 32206 0.45834 0 1 2811300 + 51587 16081 34246 34267 50491 50491 0.1553159989073265 VPEPPAVPYL 10 Unmodified _VPEPPAVPYL_ 0 0 0 REV__RASA1|p.V643Gfs*4|1|0.04|ENSG00000145715|chr5:87374313-87374314|-/GGCT|frameshift_variant REV__RASA1|p.V643Gfs*4|1|0.04|ENSG00000145715|chr5:87374313-87374314|-/GGCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27978515625 2 541.30005 1080.58555 NaN NaN NaN NaN NaN NaN NaN 129 1 124.37 123.87 124.87 -4.6292 0 0 0 0.22588 1 25433 25433 10.824 0 1 + 51588 16848 34247 34268 50492 50492 0.04847797762840855 VPEQCEKKIER 11 Unmodified _VPEQCEKKIER_ 0 0 0 nc|ENSG00000263155|P0CAP1-8|MYZAP;nc|ENSG00000263155|P0CAP1-5|MYZAP;nc|ENSG00000263155|P0CAP1-10|MYZAP;nc|ENSG00000263155|P0CAP1-7|MYZAP;nc|ENSG00000263155|P0CAP1-6|MYZAP;nc|ENSG00000263155|P0CAP1-9|MYZAP;nc|ENSG00000263155|P0CAP1-3|MYZAP;nc|ENSG00000263155|P0CAP1-4|MYZAP;nc|ENSG00000263155|P0CAP1-2|MYZAP;ENSG00000263155|ENST00000267853|MYZAP;nc|ENSG00000263155|P0CAP1-11|MYZAP nc|ENSG00000263155|P0CAP1-8|MYZAP nc|ENSG00000263155|P0CAP1-8|MYZAP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7525634765625 3 453.574738 1357.70238 0.015095 6.8469E-06 0.090418 4.1011E-05 0.10551 4.7858E-05 453.57478993082134 41.191 0.94873 38.701 38.319 39.268 -2.4896 69 26 3 0 0 0 0.95899 1 7433 7433 5.1984 1.0818 1 2594400 51589 7971 34248 34269 50493 50493 0.03784167920298387 VPERKRST 8 Unmodified _VPERKRST_ 0 0 0 ENST00000413990.1_1_1:158146977-158147493:-|nuORF;ELL2|p.K468Nfs*8|1|0.32|ENSG00000118985|chr5:95898361-95898361|T/-|frameshift_variant;ELL2|p.H478Afs*4|1|0.2|ENSG00000118985|chr5:95898334-95898335|-/T|frameshift_variant;ENSG00000118985|ENST00000237853|ELL2 ENST00000413990.1_1_1:158146977-158147493:-|nuORF ENST00000413990.1_1_1:158146977-158147493:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.85528564453125 3 324.857686 971.551228 -0.41348 -0.00013432 0.21136 6.8662E-05 -0.20212 -6.5661E-05 324.85773613513504 34.363 0.3857 32.045 31.84 32.226 -2.3175 24 10 3 0 0 0 8448 1 6325 6325 0.063987 0 1 1705600 51590 937 34249 34270 50494 50494 0.06431394394610379 VPESPRRMMT 10 Unmodified _VPESPRRMMT_ 0 0 0 nc|ENSG00000091732|Q86WB0-3|ZC3HC1;nc|ENSG00000091732|Q86WB0-2|ZC3HC1;ENSG00000091732|ENST00000358303|ZC3HC1 nc|ENSG00000091732|Q86WB0-3|ZC3HC1 nc|ENSG00000091732|Q86WB0-3|ZC3HC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2982177734375 2 602.302275 1202.59 NaN NaN NaN NaN NaN NaN NaN 159.83 1 154.57 154.07 155.07 -5.2526 0 0 0 0.22588 1 31011 31011 6.2058 0.47393 1 51591 1816 34250 34271 50495 50495 -0.0031938435754454986 VPEVLRMPPG 10 Unmodified _VPEVLRMPPG_ 0 0 0 REV__PRRC2A|p.T807Nfs*10|1|0.5|ENSG00000204469|chr6:31630754-31630755|-/A|frameshift_variant REV__PRRC2A|p.T807Nfs*10|1|0.5|ENSG00000204469|chr6:31630754-31630755|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7911987304688 2 547.804977 1093.5954 NaN NaN NaN NaN NaN NaN NaN 153.38 1 153.38 152.88 153.88 0 0 0 0 0.22583 1 30732 30732 13.906 3.8321 1 + 51592 19539 34251 34272 50496 50496 0.05234662496582132 VPEYQVPP 8 Unmodified _VPEYQVPP_ 0 0 0 REV__ENSG00000101310|ENST00000650089|SEC23B REV__ENSG00000101310|ENST00000650089|SEC23B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1693420410156 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.046 1 71.452 70.952 71.952 -3.594 0 0 0 0.21486 1 14261 14261 1.8442 0.6509 1 + 51593 14775 34252 34273 50497 50497 0.00354693631857117 VPEYQVPP 8 Unmodified _VPEYQVPP_ 0 0 0 REV__ENSG00000101310|ENST00000650089|SEC23B REV__ENSG00000101310|ENST00000650089|SEC23B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 75.078 1 71.484 70.984 71.984 -3.594 0 0 0 0.21486 1 14268 14268 1.8442 0.6509 1 + 51594 14775 34252 34273 50498 50498 0.00354693631857117 VPFFLLLL 8 Unmodified _VPFFLLLL_ 0 0 0 REV__ENST00000479235.5_1_1:46093645-46093840:-|nuORF REV__ENST00000479235.5_1_1:46093645-46093840:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2438659667969 2 481.30969 960.604826 NaN NaN NaN NaN NaN NaN NaN 55.723 1 52.533 52.033 53.033 -3.1895 0 0 0 0.21486 1 10307 10307 0.79363 0 1 + 51595 22150 34253 34274 50499 50499 0.12294798844436627 VPFHLAFM 8 Unmodified _VPFHLAFM_ 0 0 0 REV__ENST00000489152.5_1_2:74717680-74718064:+|nuORF REV__ENST00000489152.5_1_2:74717680-74718064:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2528076171875 2 481.251849 960.489145 0.38 0.00018287 -0.43445 -0.00020908 -0.054459 -2.6208E-05 481.25159336220605 102.89 0.75591 102.89 102.48 103.24 0 45 21 3 0 0 0 0.67903 4 20165 20165;20168;20172;20233 17.087 0 1 4840000 + 51596 22284 34254 34275 50500;50501;50502;50503 50500 0.007319517219116278 VPFHLAFM 8 Unmodified _VPFHLAFM_ 0 0 0 REV__ENST00000489152.5_1_2:74717680-74718064:+|nuORF REV__ENST00000489152.5_1_2:74717680-74718064:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25439453125 2 481.251849 960.489145 -0.36248 -0.00017445 -0.11577 -5.5717E-05 -0.47826 -0.00023016 481.2518328932423 106.89 0.90648 102.63 102.15 103.05 -4.2638 55 25 3 0 0 0 0.67903 3 20980 20980;20992;21091 17.087 3.1805 1 11243000 + 51597 22284 34254 34275 50504;50505;50506 50504 0.007319517219116278 VPFHLAFM 8 Unmodified _VPFHLAFM_ 0 0 0 REV__ENST00000489152.5_1_2:74717680-74718064:+|nuORF REV__ENST00000489152.5_1_2:74717680-74718064:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2528381347656 2 481.251849 960.489145 0.016103 7.7498E-06 -0.43155 -0.00020768 -0.41545 -0.00019993 481.25165324421954 107 0.72173 102.59 102.2 102.92 -4.4121 39 20 2 0 0 0 0.67903 3 20471 20471;20517;20571 17.087 0 1 6962000 + 51598 22284 34254 34275 50507;50508;50509 50507 0.007319517219116278 VPFHLAFM 8 Unmodified _VPFHLAFM_ 0 0 0 REV__ENST00000489152.5_1_2:74717680-74718064:+|nuORF REV__ENST00000489152.5_1_2:74717680-74718064:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2541809082031 2 481.251849 960.489145 0.65251 0.00031402 -0.8134 -0.00039145 -0.16089 -7.7427E-05 481.2515083554574 106.73 0.75903 102.64 102.26 103.02 -4.0913 39 21 2 0 0 0 0.67903 2 20485 20485;20569 24.21 7.1234 1 3656300 + 51599 22284 34254 34275 50510;50511 50510 0.007319517219116278 VPFHYEVFFTR 11 Unmodified _VPFHYEVFFTR_ 0 0 0 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2444152832031 3 481.24695 1440.71902 NaN NaN NaN NaN NaN NaN NaN 66.222 1 66.222 65.722 66.722 0 0 0 0 0.22632 1 12787 12787 2.732 0 1 + 51600 17988 34255 34276 50512 50512 0.016290368685304202 VPFIVRHVV 9 Unmodified _VPFIVRHVV_ 0 0 0 FAM13B|p.F782Lfs*18|2|0.29|ENSG00000031003|chr5:137943145-137943145|A/-|frameshift_variant;nc|ENSG00000031003|Q9NYF5-2|FAM13B;nc|ENSG00000031003|Q9NYF5|FAM13B;ENSG00000031003|ENST00000689681|FAM13B FAM13B|p.F782Lfs*18|2|0.29|ENSG00000031003|chr5:137943145-137943145|A/-|frameshift_variant FAM13B|p.F782Lfs*18|2|0.29|ENSG00000031003|chr5:137943145-137943145|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2683715820312 2 533.332019 1064.64948 NaN NaN NaN NaN NaN NaN NaN 133.31 1 128.67 128.17 129.17 -4.6399 0 0 0 0.19657 1 26283 26283 4.897 3.1547 1 51601 1157 34256 34277 50513 50513 0.11974622710454241 VPFKPLRNT 9 Unmodified _VPFKPLRNT_ 0 0 0 REV__ENSG00000157653|ENST00000374165|C9orf43 REV__ENSG00000157653|ENST00000374165|C9orf43 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.55743408203125 3 357.881831 1070.62366 -0.34558 -0.00012368 -3.3507 -0.0011992 -3.6963 -0.0013228 357.8804741319613 15.939 0.24355 15.939 15.814 16.058 0 9 6 2 0 0 0 0.87918 1 2459 2459 2.7352 0.45242 1 233900 + 51602 17304 34257 34278 50514 50514 0.09117728468186215 VPFLLLKLA 9 Unmodified _VPFLLLKLA_ 0 0 0 ENST00000396582.6_1_14:32626211-32626439:+|nuORF ENST00000396582.6_1_14:32626211-32626439:+|nuORF ENST00000396582.6_1_14:32626211-32626439:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 507.0862121582031 2 507.341521 1012.66849 NaN NaN NaN NaN NaN NaN NaN 164.44 1 159.37 158.87 159.87 -5.0648 0 0 0 0.1963 1 32067 32067 0 0 1 51603 9448 34258 34279 50515 50515 0.16266159281508408 VPFLLLVQ 8 Unmodified _VPFLLLVQ_ 0 0 0 ENST00000534183.5_1_11:62105600-62156860:+|nuORF ENST00000534183.5_1_11:62105600-62156860:+|nuORF ENST00000534183.5_1_11:62105600-62156860:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.13641357421875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 153.22 1 148.45 147.95 148.95 -4.7684 0 0 0 0.21486 1 30448 30448 0.40072 0 1 51604 11003 34259 34280 50516 50516 0.1126532432199383 VPFNAKDIT 9 Unmodified _VPFNAKDIT_ 0 0 0 REV__DGKA|p.L450F|1|0.24|ENSG00000065357|chr12:55942187-55942187|G/T|missense_variant REV__DGKA|p.L450F|1|0.24|ENSG00000065357|chr12:55942187-55942187|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 336.0308837890625 3 335.518559 1003.53385 -0.50959 -0.00017098 0.99773 0.00033476 0.48814 0.00016378 335.51890774297334 16.344 0.17132 15.122 15.058 15.23 -1.2219 7 4 2 0 0 0 0.884 1 2334 2334 1.1933 0.735 1 257410 + 51605 13671 34260 34281 50517 50517 0.032220540689422705 VPFNAKDIT 9 Unmodified _VPFNAKDIT_ 0 0 0 REV__DGKA|p.L450F|1|0.24|ENSG00000065357|chr12:55942187-55942187|G/T|missense_variant REV__DGKA|p.L450F|1|0.24|ENSG00000065357|chr12:55942187-55942187|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 335.518559 1003.53385 -0.507 -0.00017011 1.4702 0.00049327 0.96318 0.00032317 335.5189829193787 15.21 0.27615 15.21 15.125 15.401 0 0.054891 0.00022835 NaN 1.1933 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 459600 + 51606 13671 34260 34281 0.032220540689422705 VPFNAKDIT 9 Unmodified _VPFNAKDIT_ 0 0 0 REV__DGKA|p.L450F|1|0.24|ENSG00000065357|chr12:55942187-55942187|G/T|missense_variant REV__DGKA|p.L450F|1|0.24|ENSG00000065357|chr12:55942187-55942187|G/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 335.518559 1003.53385 -0.69066 -0.00023173 1.4058 0.00047168 0.71515 0.00023995 335.5189962414599 16.349 0.24057 15.133 15.01 15.25 -1.2159 -0.021763 0.00016356 NaN 1.1933 11 6 3 NaN NaN NaN NaN 0 NaN NaN 0 373200 + 51607 13671 34260 34281 0.032220540689422705 VPFRGGHRFTA 11 Unmodified _VPFRGGHRFTA_ 0 0 0 REV__MTMR9|p.N195Mfs*4|1|0.2|ENSG00000104643|chr8:11305000-11305000|A/-|frameshift_variant REV__MTMR9|p.N195Mfs*4|1|0.2|ENSG00000104643|chr8:11305000-11305000|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.753173828125 2 622.835988 1243.65742 NaN NaN NaN NaN NaN NaN NaN 10.24 1 9.3359 8.8359 9.8359 -0.90401 0 0 0 0.23698 1 1263 1263 1.3295 0.72803 1 + 51608 14931 34261 34282 50518 50518 0.04534149959954448 VPFRGKSR 8 Unmodified _VPFRGKSR_ 0 0 0 REV__nc|ENSG00000139505|Q9Y217-2|MTMR6 REV__nc|ENSG00000139505|Q9Y217-2|MTMR6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1910095214844 3 316.190888 945.550834 NaN NaN NaN NaN NaN NaN NaN 34.522 1 32.306 31.806 32.806 -2.2158 0 0 0 0.21486 1 6052 6052 1.8442 0 1 + 51609 16521 34262 34283 50519 50519 0.07588019465424622 VPFSEKSI 8 Unmodified _VPFSEKSI_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7488098144531 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 150.8 1 145.68 145.18 146.18 -5.1204 0 0 0 0.21486 1 29228 29228 10.183 0 1 + 51610 17221 34263 34284 50520 50520 0.029309801489034726 VPGAHLPA 8 Unmodified _VPGAHLPA_ 0 0 0 ENST00000371586.6_2_1:52818596-52818848:-|nuORF ENST00000371586.6_2_1:52818596-52818848:-|nuORF ENST00000371586.6_2_1:52818596-52818848:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2214660644531 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 94.213 1 90.069 89.569 90.569 -4.1435 0 0 0 0.21486 1 17969 17969 2.8892 0 1 51611 9163 34264 34285 50521 50521 0.033378788713775975 VPGAPHIA 8 Unmodified _VPGAPHIA_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2189025878906 2 381.218863 760.423173 NaN NaN NaN NaN NaN NaN NaN 15.031 1 13.809 13.309 14.309 -1.2219 0 0 0 0.2396 1 2075 2075 0.12286 0 1 51612 2813 34265 34286 50522 50522 0.033378788713775975 VPGCAHHAD 9 Unmodified _VPGCAHHAD_ 0 0 0 ENSG00000131808|ENST00000533718|FSHB ENSG00000131808|ENST00000533718|FSHB ENSG00000131808|ENST00000533718|FSHB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7694091796875 2 453.697969 905.381385 NaN NaN NaN NaN NaN NaN NaN 111.62 1 107.13 106.63 107.63 -4.4915 0 0 0 0.23508 1 21423 21423 9.3474 0 1 51613 3695 34266 34287 50523 50523 -0.07509044879464 VPGDQENG 8 Unmodified _VPGDQENG_ 0 0 0 ENST00000591039.1_1_19:10610689-10613347:-|nuORF;ENST00000591419.2_2_19:10610689-10613347:-|nuORF ENST00000591039.1_1_19:10610689-10613347:-|nuORF ENST00000591039.1_1_19:10610689-10613347:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3495483398438 1 815.352987 814.345711 0.49412 0.00040289 -1.0593 -0.00086372 -0.56519 -0.00046083 815.347852667042 174.5 0.10878 174.5 174.44 174.55 0 4 2 2 0 0 0 0.76728 1 36136 36136 5.7604 0.52976 1 4368500 51614 11609 34267 34288 50524 50524 -0.06888803855463266 VPGEKKTD 8 Unmodified _VPGEKKTD_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-4|WNK1 REV__nc|ENSG00000060237|Q9H4A3-4|WNK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2171325683594 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 63.109 1 63.109 62.609 63.609 0 0 0 0 0.21486 1 12129 12129 9.3474 0 1 + 51615 14142 34268 34289 50525 50525 0.019015056264720442 VPGETGLPG 9 Unmodified _VPGETGLPG_ 0 0 0 MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant;MIS18BP1|p.S991Nfs*17|1|0.35|ENSG00000129534|chr14:45217046-45217050|TGTAC/-|frameshift_variant;MIS18BP1|p.K1063Nfs*18|1|0.14|ENSG00000129534|chr14:45206134-45206134|T/-|frameshift_variant;ENSG00000129534|ENST00000310806|MIS18BP1;MIS18BP1|p.N380Ifs*3|5|0.35|ENSG00000129534|chr14:45242038-45242038|T/-|frameshift_variant;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1 MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.2439880371094 2 413.718893 825.423233 -0.2347 -9.71E-05 0.16007 6.6226E-05 -0.074626 -3.0874E-05 413.7189119224697 58.821 1.6461 55.911 55.337 56.983 -2.9105 135 46 5 0 0 0 0.24143 1 11349 11349 1.2148 0 1 85005000 51616 3569 34269 34290 50526 50526 0.0035383408071538724 VPGETGLPG 9 Unmodified _VPGETGLPG_ 0 0 0 MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant;MIS18BP1|p.S991Nfs*17|1|0.35|ENSG00000129534|chr14:45217046-45217050|TGTAC/-|frameshift_variant;MIS18BP1|p.K1063Nfs*18|1|0.14|ENSG00000129534|chr14:45206134-45206134|T/-|frameshift_variant;ENSG00000129534|ENST00000310806|MIS18BP1;MIS18BP1|p.N380Ifs*3|5|0.35|ENSG00000129534|chr14:45242038-45242038|T/-|frameshift_variant;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1 MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 413.718893 825.423233 -0.10312 -4.2664E-05 0.13357 5.5262E-05 0.030451 1.2598E-05 413.7189006807176 55.887 1.375 55.887 55.335 56.71 0 -0.059865 -3.281E-06 NaN 1.2148 106 38 4 NaN NaN NaN NaN 0 NaN NaN 0 62479000 51617 3569 34269 34290 0.0035383408071538724 VPGETGLPG 9 Unmodified _VPGETGLPG_ 0 0 0 MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant;MIS18BP1|p.S991Nfs*17|1|0.35|ENSG00000129534|chr14:45217046-45217050|TGTAC/-|frameshift_variant;MIS18BP1|p.K1063Nfs*18|1|0.14|ENSG00000129534|chr14:45206134-45206134|T/-|frameshift_variant;ENSG00000129534|ENST00000310806|MIS18BP1;MIS18BP1|p.N380Ifs*3|5|0.35|ENSG00000129534|chr14:45242038-45242038|T/-|frameshift_variant;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1 MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 413.718893 825.423233 0.059455 2.4598E-05 -0.062019 -2.5658E-05 -0.0025642 -1.0608E-06 413.7188270245075 59.292 1.3404 55.978 55.355 56.695 -3.3139 0.031407 -0.00016512 NaN 1.2148 101 37 4 NaN NaN NaN NaN 0 NaN NaN 0 48841000 51618 3569 34269 34290 0.0035383408071538724 VPGETGLPG 9 Unmodified _VPGETGLPG_ 0 0 0 MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant;MIS18BP1|p.S991Nfs*17|1|0.35|ENSG00000129534|chr14:45217046-45217050|TGTAC/-|frameshift_variant;MIS18BP1|p.K1063Nfs*18|1|0.14|ENSG00000129534|chr14:45206134-45206134|T/-|frameshift_variant;ENSG00000129534|ENST00000310806|MIS18BP1;MIS18BP1|p.N380Ifs*3|5|0.35|ENSG00000129534|chr14:45242038-45242038|T/-|frameshift_variant;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1 MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 413.718893 825.423233 -0.27475 -0.00011367 0.2773 0.00011472 0.0025438 1.0524E-06 413.718975981175 59.217 1.3685 56.011 55.434 56.803 -3.2052 0.064504 0.00011564 NaN 1.2148 106 38 4 NaN NaN NaN NaN 0 NaN NaN 0 55933000 51619 3569 34269 34290 0.0035383408071538724 VPGGICGC 8 Unmodified _VPGGICGC_ 0 0 0 nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant;MYCBP2|p.T1507Ffs*24|1|0.04|ENSG00000005810|chr13:77185189-77185190|-/TTGTAAA|frameshift_variant;MYCBP2|p.N1867Tfs*9|1|0.15|ENSG00000005810|chr13:77171572-77171572|T/-|frameshift_variant;MYCBP2|p.N3049*|1|0.11|ENSG00000005810|chr13:77097894-77097895|TT/-|frameshift_variant nc|ENSG00000005810|O75592-2|MYCBP2 nc|ENSG00000005810|O75592-2|MYCBP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 353.1705627441406 2 353.15656 704.298567 NaN NaN NaN NaN NaN NaN NaN 83.663 1 79.79 79.29 80.29 -3.8736 0 0 0 0.2396 1 15892 15892 0.0082765 0 1 51620 996 34270 34291 50527 50527 -0.06541077931808559 VPGGVKQLE 9 Unmodified _VPGGVKQLE_ 0 0 0 nc|ENSG00000198911|Q12772-2|SREBF2;ENSG00000198911|ENST00000361204|SREBF2 nc|ENSG00000198911|Q12772-2|SREBF2 nc|ENSG00000198911|Q12772-2|SREBF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.1510925292969 2 463.768917 925.523281 -0.10217 -4.7382E-05 -0.059338 -2.7519E-05 -0.1615 -7.4901E-05 463.76882027119836 44.875 1.0548 42.127 41.568 42.623 -2.7475 61 29 3 0 0 0 0.85699 1 8068 8068 5.2307 0 1 4424700 51621 7522 34271 34292 50528 50528 0.05754071414514783 VPGHKLKA 8 Unmodified _VPGHKLKA_ 0 0 0 ENST00000368168.3_1_1:158300711-158300828:-|nuORF ENST00000368168.3_1_1:158300711-158300828:-|nuORF ENST00000368168.3_1_1:158300711-158300828:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.249267578125 2 425.268887 848.523222 -0.80719 -0.00034327 -3.3951 -0.0014438 -4.2023 -0.0017871 425.26826166113244 12.143 0.10293 11.134 11.069 11.172 -1.0098 4 2 2 0 0 0 8448 1 1653 1653 0 0 1 251950 51622 9090 34272 34293 50529 50529 0.09290116205158938 VPGISNVYM 9 Unmodified _VPGISNVYM_ 0 0 0 REV__GABRG2|p.A158Lfs*13|1|0.15|ENSG00000113327|chr5:162097776-162097776|A/-|frameshift_variant REV__GABRG2|p.A158Lfs*13|1|0.15|ENSG00000113327|chr5:162097776-162097776|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2530517578125 2 490.249503 978.484453 0.29209 0.0001432 -0.50001 -0.00024513 -0.20792 -0.00010193 490.249246493796 74.583 0.69873 74.583 74.082 74.781 0 26 19 2 0 0 0 0.60805 1 14379 14379 12.532 0 1 2542400 + 51623 15336 34273 34294 50530 50530 -0.0056497721150208235 VPGKACSL 8 Unmodified _VPGKACSL_ 0 0 0 REV__ENST00000493446.1_1_7:1510215-1510538:-|nuORF REV__ENST00000493446.1_1_7:1510215-1510538:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7125549316406 2 387.712556 773.41056 0.25962 0.00010066 -0.083932 -3.2541E-05 0.17568 6.8115E-05 387.71244762254594 32.369 0.77428 30.342 29.798 30.572 -2.0264 52 21 3 0 0 0 0.83271 2 5576 5576;5623 2.8892 0 1 3819600 + 51624 22347 34274 34295 50531;50532 50531 0.014790994168151883 VPGKMGIG 8 Unmodified _VPGKMGIG_ 0 0 0 tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2146911621094 2 379.715099 757.415645 -0.022434 -8.5185E-06 0.6853 0.00026022 0.66287 0.0002517 379.71505384902747 45.316 0.81023 42.451 42.09 42.901 -2.8653 87 22 5 0 0 0 0.83271 1 8257 8257 2.8892 0 1 21531000 51625 26492 34275 34296 50533 50533 0.027234032794467566 VPGLSLSSF 9 Unmodified _VPGLSLSSF_ 0 0 0 REV__ENST00000587789.2_1_19:55670919-55671346:-|nuORF REV__ENST00000587789.2_1_19:55670919-55671346:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7496337890625 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 143.98 1 139.04 138.54 139.54 -4.9445 0 0 0 0.15147 1 27798 27798 30.225 5.5509 1 + 51626 13703 34276 34297 50534 50534 0.029309801489148413 VPGPLKATLKE 11 Unmodified _VPGPLKATLKE_ 0 0 0 ENSG00000206384|ENST00000358511|COL6A6 ENSG00000206384|ENST00000358511|COL6A6 ENSG00000206384|ENST00000358511|COL6A6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3387451171875 2 576.852981 1151.69141 0.30317 0.00017488 4.297 0.0024787 4.6001 0.0026536 577.3557055984272 152.3 0.18304 152.3 152.16 152.34 0 5 4 2 0 0 0 0.95894 1 30490 30490 5.2969 1.3525 1 4181400 51627 7669 34277 34298 50535 50535 0.1216313360832828 VPGPMAPS 8 Unmodified _VPGPMAPS_ 0 0 0 REV__nc|ENSG00000165891|Q96AV8-3|E2F7 REV__nc|ENSG00000165891|Q96AV8-3|E2F7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.1443786621094 2 378.191457 754.368361 NaN NaN NaN NaN NaN NaN NaN 55.774 1 55.774 55.274 56.274 0 0 0 0 0.21486 1 10651 10651 2.5775 0 1 + 51628 17804 34278 34299 50536 50536 -0.018648759915549817 VPGPQKSVV 9 Unmodified _VPGPQKSVV_ 0 0 0 REV__ENSG00000092531|ENST00000249647|SNAP23 REV__ENSG00000092531|ENST00000249647|SNAP23 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.17620849609375 3 304.183399 909.528367 NaN NaN NaN NaN NaN NaN NaN 65.28 1 65.28 64.78 65.78 0 0 0 0 0.23508 1 12582 12582 2.7352 1.0826 1 + 51629 14587 34279 34300 50537 50537 0.06998375277134983 VPGPQKSVV 9 Unmodified _VPGPQKSVV_ 0 0 0 REV__ENSG00000092531|ENST00000249647|SNAP23 REV__ENSG00000092531|ENST00000249647|SNAP23 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.1822204589844 3 304.183399 909.528367 NaN NaN NaN NaN NaN NaN NaN 65.416 1 65.416 64.916 65.916 0 0 0 0 0.23508 1 12613 12613 2.7352 1.0826 1 + 51630 14587 34279 34300 50538 50538 0.06998375277134983 VPGQPMPPP 9 Unmodified _VPGQPMPPP_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23968505859375 2 460.238938 918.463324 NaN NaN NaN NaN NaN NaN NaN 33.469 1 31.152 30.652 31.652 -2.3175 0 0 0 0.21408 1 6120 6120 19.439 9.2556 1 51631 3218 34280 34301 50539 50539 0.0008305747962822352 VPGSEAPG 8 Unmodified _VPGSEAPG_ 0 0 0 nc|ENSG00000060566|Q68CJ9-4|CREB3L3;nc|ENSG00000060566|Q68CJ9-2|CREB3L3;ENSG00000060566|ENST00000078445|CREB3L3 nc|ENSG00000060566|Q68CJ9-4|CREB3L3 nc|ENSG00000060566|Q68CJ9-4|CREB3L3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.0727233886719 2 357.176861 712.339169 0.38859 0.0001388 0.028007 1.0003E-05 0.4166 0.0001488 357.1766881201095 29.2 0.42553 27.244 27.049 27.475 -1.9561 16 11 2 0 0 0 1.0035 1 5229 5229 2.8892 0.31174 1 512180 51632 1310 34281 34302 50540 50540 -0.02850697016185677 VPGTSKRVQ 9 Unmodified _VPGTSKRVQ_ 0 0 0 REV__ENST00000473039.5_1_9:126143713-126520026:-|nuORF REV__ENST00000473039.5_1_9:126143713-126520026:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 485.9954528808594 2 486.285266 970.555979 NaN NaN NaN NaN NaN NaN NaN 163.84 1 158.8 158.3 159.3 -5.0446 0 0 0 0.23411 1 31911 31911 13.508 0 1 + 51633 15582 34282 34303 50541 50541 0.06952278537380607 VPGVAAEV 8 Unmodified _VPGVAAEV_ 0 0 0 REV__ENST00000461555.1_1_17:16471140-16472262:-|nuORF REV__ENST00000461555.1_1_17:16471140-16472262:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3958129882812 1 741.414131 740.406855 0.71335 0.00052889 -0.2099 -0.00015562 0.50345 0.00037327 741.4138954191942 102.38 0.61407 98.362 98.009 98.623 -4.0212 30 17 2 0 0 0 0.6199 1 19704 19704 20.871 2.7362 1 2637100 + 51634 21895 34283 34304 50542 50542 0.026267529146139168 VPGVAAEV 8 Unmodified _VPGVAAEV_ 0 0 0 REV__ENST00000461555.1_1_17:16471140-16472262:-|nuORF REV__ENST00000461555.1_1_17:16471140-16472262:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 741.414131 740.406855 0.58917 0.00043682 0.6241 0.00046272 1.2133 0.00089954 741.4144699897914 98.344 0.59174 98.344 97.949 98.54 0 0.04233 0.00039463 NaN 20.871 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1975900 + 51635 21895 34283 34304 0.026267529146139168 VPGVAAEV 8 Unmodified _VPGVAAEV_ 0 0 0 REV__ENST00000461555.1_1_17:16471140-16472262:-|nuORF REV__ENST00000461555.1_1_17:16471140-16472262:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 741.414131 740.406855 0.63239 0.00046887 0.031213 2.3142E-05 0.66361 0.00049201 741.4140496692947 102.42 0.62576 98.236 97.819 98.445 -4.1861 -0.06596 -4.4946E-05 NaN 20.871 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2940400 + 51636 21895 34283 34304 0.026267529146139168 VPGVKLFF 8 Unmodified _VPGVKLFF_ 0 0 0 ENSG00000178997|ENST00000458580|EXD1 ENSG00000178997|ENST00000458580|EXD1 ENSG00000178997|ENST00000458580|EXD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7691345214844 2 453.776014 905.537475 NaN NaN NaN NaN NaN NaN NaN 111.28 1 107.05 106.55 107.55 -4.2289 0 0 0 0.21022 1 21418 21418 17.087 5.9721 1 51637 6599 34284 34305 50543 50543 0.0809276863346895 VPGWLWGT 8 Unmodified _VPGWLWGT_ 0 0 0 ENST00000401884.5_2_2:241974133-241976762:+|nuORF ENST00000401884.5_2_2:241974133-241976762:+|nuORF ENST00000401884.5_2_2:241974133-241976762:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2383728027344 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 69.678 1 66.288 65.788 66.788 -3.3903 0 0 0 0.21486 1 13183 13183 10.183 0.83596 1 51638 9514 34285 34306 50544 50544 0.004384345599078188 VPHARTRL 8 Unmodified _VPHARTRL_ 0 0 0 REV__ENST00000483318.5_1_6:30880034-30880937:+|nuORF REV__ENST00000483318.5_1_6:30880034-30880937:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.2021484375 3 317.194521 948.561733 NaN NaN NaN NaN NaN NaN NaN 34.434 1 32.117 31.617 32.617 -2.3175 0 0 0 0.21486 1 6322 6322 0.45834 0 1 + 51639 19645 34286 34307 50545 50545 0.08539421839691386 VPHGFQGQQP 10 Unmodified _VPHGFQGQQP_ 0 0 0 nc|ENSG846|Q9YNA8|ERVK-19_gag nc|ENSG846|Q9YNA8|ERVK-19_gag nc|ENSG846|Q9YNA8|ERVK-19_gag MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.766357421875 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 162.79 1 158 157.5 158.5 -4.7898 0 0 0 0.22588 1 32408 32408 11.64 1.5664 1 51640 12668 34287 34308 50546 50546 -0.012531959850548446 VPHREVPHF 9 Unmodified _VPHREVPHF_ 0 0 0 REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 559.2999877929688 2 559.298707 1116.58286 NaN NaN NaN NaN NaN NaN NaN 171.68 1 166.76 166.26 167.26 -4.9149 0 0 0 0.23508 1 34017 34017 9.3474 0 1 + 51641 20733 34288 34309 50547 50547 0.02923387148553047 VPHRHPLSY 9 Unmodified _VPHRHPLSY_ 0 0 0 REV__nc|ENSG00000134574|Q92466-4|DDB2 REV__nc|ENSG00000134574|Q92466-4|DDB2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 369.2015686035156 3 369.201564 1104.58286 NaN NaN NaN NaN NaN NaN NaN 93.036 1 89.045 88.545 89.545 -3.9907 0 0 0 0.23508 1 18226 18226 1.0715 0 1 + 51642 16218 34289 34310 50548 50548 0.03475387148569098 VPHSQRRES 9 Unmodified _VPHSQRRES_ 0 0 0 nc|ENSG00000285188|Q08493-2|PDE4C;ENSG00000105650|ENST00000262805|PDE4C;nc|ENSG00000285188|Q08493|PDE4C;ENST00000597360.5_1_19:18331913-18333093:-|nuORF nc|ENSG00000285188|Q08493-2|PDE4C nc|ENSG00000285188|Q08493-2|PDE4C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7911987304688 2 548.286328 1094.5581 0.33491 0.00018363 -0.65012 -0.00035645 -0.31521 -0.00017283 548.7894859878165 156.18 0.17268 156.18 156.07 156.25 0 6 4 2 0 0 0 0.87634 1 31341 31341 6.7232 0 1 1453900 51643 2327 34290 34311 50549 50549 0.01460707275191453 VPHTSDKFL 9 Unmodified _VPHTSDKFL_ 0 0 0 REV__ENSG00000213160|ENST00000392647|KLHL23 REV__ENSG00000213160|ENST00000392647|KLHL23 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2691040039062 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 94.312 1 90.468 89.968 90.968 -3.844 0 0 0 0.19649 1 18092 18092 0.073264 0 1 + 51644 19636 34291 34312 50550 50550 0.025174564432290936 VPIEIKNCQ 9 Unmodified _VPIEIKNCQ_ 0 0 0 ENSG00000240720|ENST00000458448|LRRD1 ENSG00000240720|ENST00000458448|LRRD1 ENSG00000240720|ENST00000458448|LRRD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2818603515625 2 522.281334 1042.54812 NaN NaN NaN NaN NaN NaN NaN 158.34 1 153.55 153.05 154.05 -4.7952 0 0 0 0.23508 1 31485 31485 8.5933 0 1 51645 7845 34292 34313 50551 50551 0.028543832255763846 VPIHLGGG 8 Unmodified _VPIHLGGG_ 0 0 0 REV__ENST00000239944.6_1_3:150264054-150264312:-|nuORF REV__ENST00000239944.6_1_3:150264054-150264312:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.218994140625 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 55.364 1 52.229 51.729 52.729 -3.1352 0 0 0 0.23899 1 10229 10229 1.3295 0 1 + 51646 20088 34293 34314 50552 50552 0.038898788713822796 VPIKHRVFT 9 Unmodified _VPIKHRVFT_ 0 0 0 REV__ENSG00000105135|ENST00000263383|ILVBL REV__ENSG00000105135|ENST00000263383|ILVBL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 366.2273864746094 3 366.225709 1095.6553 NaN NaN NaN NaN NaN NaN NaN 177.02 1 172.15 171.65 172.65 -4.8739 0 0 0 0.23508 1 35223 35223 1.0715 0 1 + 51647 14963 34294 34315 50553 50553 0.11129721222141598 VPIKRLIKGG 10 Unmodified _VPIKRLIKGG_ 0 0 0 REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1 REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26025390625 2 540.866226 1079.7179 0.45118 0.00024403 0.67229 0.00036362 1.1235 0.00060764 541.3685516644225 118.5 0.11017 114 113.93 114.04 -4.502 4 2 2 0 0 0 0.91149 1 23354 23354 0.40072 0.40072 1 1314800 + 51648 14249 34295 34316 50554 50554 0.18122867290298927 VPILLILVSFF 11 Unmodified _VPILLILVSFF_ 0 0 0 REV__ENSG00000204703|ENST00000377173|OR2B3 REV__ENSG00000204703|ENST00000377173|OR2B3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7584228515625 2 630.901943 1259.78933 NaN NaN NaN NaN NaN NaN NaN 85.655 1 85.655 85.155 86.155 0 0 0 0 0.22862 1 16717 16717 9.3831 5.4387 1 + 51649 19563 34296 34317 50555 50555 0.1698294220432217 VPINFKITL 9 Unmodified _VPINFKITL_ 0 0 0 REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1 REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2801513671875 2 522.826235 1043.63792 0.29105 0.00015217 1.2148 0.00063511 1.5058 0.00078728 522.8272995877687 137.65 0.11276 132.81 132.73 132.84 -4.84 4 2 2 0 0 0 0.8204 1 26507 26507 2.0598 1.4583 1 642860 + 51650 25380 34297 34318 50556 50556 0.11784380896460789 VPIPLKLLES 10 Unmodified _VPIPLKLLES_ 0 0 0 REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4 REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 554.86572265625 2 554.85245 1107.69035 NaN NaN NaN NaN NaN NaN NaN 9.2877 1 9.2877 8.7877 9.7877 0 0 0 0 0.22588 1 1057 1057 0.40072 0 1 + 51651 15921 34298 34319 50557 50557 0.14080919239427203 VPIVPVKR 8 Unmodified _VPIVPVKR_ 0 0 0 REV__SLITRK2|p.S267Vfs*23|1|0.3|ENSG00000185985|chrX:145823220-145823220|A/-|frameshift_variant REV__SLITRK2|p.S267Vfs*23|1|0.3|ENSG00000185985|chrX:145823220-145823220|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 303.19140625 3 303.207767 906.601472 NaN NaN NaN NaN NaN NaN NaN 81.524 1 77.967 77.467 78.467 -3.557 0 0 0 0.21486 1 15923 15923 0.45834 0 1 + 51652 24655 34299 34320 50558 50558 0.14443548790416116 VPKAVKIR 8 Unmodified _VPKAVKIR_ 0 0 0 REV__IDH2|p.T146Lfs*15|1|0.49|ENSG00000182054|chr15:90088686-90088686|C/-|frameshift_variant REV__IDH2|p.T146Lfs*15|1|0.49|ENSG00000182054|chr15:90088686-90088686|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.1905212402344 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 92.11 1 88.015 87.515 88.515 -4.0946 0 0 0 0.21486 1 17547 17547 1.6526 0 1 + 51653 18752 34300 34321 50559 50559 0.15394951164705617 VPKCLKGTK 9 Unmodified _VPKCLKGTK_ 0 0 0 ENST00000469535.5_1_1:207934598-207940656:+|nuORF ENST00000469535.5_1_1:207934598-207940656:+|nuORF ENST00000469535.5_1_1:207934598-207940656:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 325.201416015625 3 325.200284 972.579022 NaN NaN NaN NaN NaN NaN NaN 130.59 1 125.81 125.31 126.31 -4.7725 0 0 0 0.23508 1 25135 25135 1.0715 0.10919 1 51654 10182 34301 34322 50560 50560 0.09163581330494708 VPKDRRVDP 9 Unmodified _VPKDRRVDP_ 0 0 0 REV__ENST00000578529.5_1_18:214628-260326:-|nuORF REV__ENST00000578529.5_1_18:214628-260326:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2809448242188 2 541.309272 1080.60399 NaN NaN NaN NaN NaN NaN NaN 76.801 1 73.386 72.886 73.886 -3.4151 0 0 0 0.22962 1 14988 14988 14.838 0.43289 1 + 51655 14391 34302 34323 50561 50561 0.06691352457414723 VPKFKGEIKKS 11 Unmodified _VPKFKGEIKKS_ 0 0 0 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7615966796875 2 630.887355 1259.76016 NaN NaN NaN NaN NaN NaN NaN 161.69 1 156.9 156.4 157.4 -4.7898 0 0 0 0.23379 1 32158 32158 5.2969 1.7004 1 51656 26200 34303 34324 50562 50562 0.14066797908026274 VPKFLSRK 8 Unmodified _VPKFLSRK_ 0 0 0 ENSG00000160194|ENST00000354250|NDUFV3 ENSG00000160194|ENST00000354250|NDUFV3 ENSG00000160194|ENST00000354250|NDUFV3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 325.535400390625 3 325.543038 973.607286 NaN NaN NaN NaN NaN NaN NaN 32.263 1 32.263 31.763 32.763 0 0 0 0 0.23584 1 5855 5855 0.063987 0 1 51657 5234 34304 34325 50563 50563 0.11942647302089426 VPKKKKPLKL 10 Unmodified _VPKKKKPLKL_ 0 0 0 ENSG00000104332|ENST00000220772|SFRP1 ENSG00000104332|ENST00000220772|SFRP1 ENSG00000104332|ENST00000220772|SFRP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.275146484375 2 589.921001 1177.82745 0.47715 0.00028148 2.0564 0.0012131 2.5336 0.0014946 589.9230405453292 129.07 0.34923 124.44 124.22 124.57 -4.6292 11 9 2 0 0 0 0.91149 1 25440 25440 0.45834 0.057624 1 1368800 51658 2229 34305 34326 50564 50564 0.24564872909650148 VPKKNRKR 8 Unmodified _VPKKNRKR_ 0 0 0 tr|U7T3C4|U7T3C4_FUSNULargeribosomalsubunitproteinuL15OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplOPE=3SV=1 tr|U7T3C4|U7T3C4_FUSNULargeribosomalsubunitproteinuL15OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplOPE=3SV=1 tr|U7T3C4|U7T3C4_FUSNULargeribosomalsubunitproteinuL15OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplOPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 513.2953491210938 2 513.338167 1024.66178 NaN NaN NaN NaN NaN NaN NaN 117.24 1 117.24 116.74 117.74 0 0 0 0 0.21486 1 23093 23093 2.5775 0 1 51659 26391 34306 34327 50565 50565 0.15043659173511514 VPKKPKRKKRR 11 Unmodified _VPKKPKRKKRR_ 0 0 0 ENST00000590548.5_1_19:11597897-11616622:-|nuORF;ENSG00000161914|ENST00000293771|ZNF653 ENST00000590548.5_1_19:11597897-11616622:-|nuORF ENST00000590548.5_1_19:11597897-11616622:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 474.7750244140625 3 474.328161 1419.96265 NaN NaN NaN NaN NaN NaN NaN 120.25 1 115.79 115.29 116.29 -4.467 0 0 0 0.22632 1 23153 23153 0 0 1 51660 5306 34307 34328 50566 50566 0.2694716582395813 VPKLKRLV 8 Unmodified _VPKLKRLV_ 0 0 0 REV__ENSG00000125815|ENST00000246012|CST8 REV__ENSG00000125815|ENST00000246012|CST8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.2277526855469 3 318.22705 951.659321 NaN NaN NaN NaN NaN NaN NaN 14.956 1 13.745 13.245 14.245 -1.2106 0 0 0 0.21486 1 2026 2026 0.45834 0 1 + 51661 15832 34308 34329 50567 50567 0.1815581071584802 VPKNGGKYCE 10 Unmodified _VPKNGGKYCE_ 0 0 0 ENSG00000154734|ENST00000284984|ADAMTS1;ENST00000464589.1_1_21:28211878-28212356:-|nuORF ENSG00000154734|ENST00000284984|ADAMTS1 ENSG00000154734|ENST00000284984|ADAMTS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7667236328125 2 547.768591 1093.52263 NaN NaN NaN NaN NaN NaN NaN 173.14 1 168.26 167.76 168.76 -4.881 0 0 0 0.22588 1 34403 34403 6.7232 1.4925 1 51662 5023 34309 34330 50568 50568 -0.020390912968423436 VPKPRVGVR 9 Unmodified _VPKPRVGVR_ 0 0 0 ENSG00000064999|ENST00000360359|ANKS1A ENSG00000064999|ENST00000360359|ANKS1A ENSG00000064999|ENST00000360359|ANKS1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.91326904296875 3 336.553937 1006.63998 -0.93178 -0.00031359 0.79021 0.00026595 -0.14157 -4.7646E-05 336.5542048329344 13.406 0.75559 12.396 11.833 12.589 -1.0098 35 21 3 0 0 0 0.83274 1 1920 1920 0.26902 0 1 7376600 51663 1347 34310 34331 50569 50569 0.13692854424948564 VPKPRVGVR 9 Unmodified _VPKPRVGVR_ 0 0 0 ENSG00000064999|ENST00000360359|ANKS1A ENSG00000064999|ENST00000360359|ANKS1A ENSG00000064999|ENST00000360359|ANKS1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 336.553937 1006.63998 -0.53316 -0.00017944 0.51965 0.00017489 -0.013513 -4.5478E-06 336.5541018311063 12.7 0.38221 12.7 12.615 12.997 0 0.26955 -9.0021E-05 NaN 0.26902 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 11824000 51664 1347 34310 34331 0.13692854424948564 VPKPRVGVR 9 Unmodified _VPKPRVGVR_ 0 0 0 ENSG00000064999|ENST00000360359|ANKS1A ENSG00000064999|ENST00000360359|ANKS1A ENSG00000064999|ENST00000360359|ANKS1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 336.553937 1006.63998 -0.67042 -0.00022563 0.5103 0.00017174 -0.16012 -5.389E-05 336.55410745479116 13.368 0.26818 12.195 12.078 12.346 -1.173 -0.23539 -9.9458E-05 NaN 0.26902 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 5499600 51665 1347 34310 34331 0.13692854424948564 VPKRRFYRQFK 11 Unmodified _VPKRRFYRQFK_ 0 0 0 REV__ENSG00000075035|ENST00000547525|WSCD2 REV__ENSG00000075035|ENST00000547525|WSCD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 509.2531433105469 3 508.968522 1523.88374 0.20462 0.00010414 1.0386 0.00052859 1.2432 0.00063273 508.9701671853703 146.6 0.17058 146.6 146.47 146.64 0 5 4 2 0 0 0 0.82458 1 29306 29306 0.36667 0.28332 1 1119800 + 51666 14323 34311 34332 50570 50570 0.1427489379900635 VPKTTTLF 8 Unmodified _VPKTTTLF_ 0 0 0 REV__GP1BA|p.T494Pfs*59|1|0.4|ENSG00000185245|chr17:4934078-4934078|A/-|frameshift_variant REV__GP1BA|p.T494Pfs*59|1|0.4|ENSG00000185245|chr17:4934078-4934078|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7682189941406 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 166.24 1 161.45 160.95 161.95 -4.7898 0 0 0 0.19342 1 33374 33374 26.884 8.7487 1 + 51667 18950 34312 34333 50571 50571 0.0656785704561571 VPKVLIPY 8 Unmodified _VPKVLIPY_ 0 0 0 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647033691406 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 65.22 1 62.173 61.673 62.673 -3.047 0 0 0 0.21486 1 12619 12619 0.45834 0 1 51668 26324 34313 34334 50572 50572 0.1126532432199383 VPKVLIPY 8 Unmodified _VPKVLIPY_ 0 0 0 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2370300292969 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 72.896 1 69.269 68.769 69.769 -3.6275 0 0 0 0.21486 1 13773 13773 0.45834 0 1 51669 26324 34313 34334 50573 50573 0.1126532432199383 VPKVLIPY 8 Unmodified _VPKVLIPY_ 0 0 0 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.23028564453125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 96.366 1 92.132 91.632 92.632 -4.2348 0 0 0 0.21486 1 18400 18400 0.45834 0 1 51670 26324 34313 34334 50574 50574 0.1126532432199383 VPKVLIPY 8 Unmodified _VPKVLIPY_ 0 0 0 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164306640625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 154.1 1 148.88 148.38 149.38 -5.2209 0 0 0 0.21486 1 29872 29872 0.45834 0 1 51671 26324 34313 34334 50575 50575 0.1126532432199383 VPKVLIPY 8 Unmodified _VPKVLIPY_ 0 0 0 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1654052734375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 154.4 1 149.17 148.67 149.67 -5.2209 0 0 0 0.2396 1 29935 29935 0.12286 0 1 51672 26324 34313 34334 50576 50576 0.1126532432199383 VPLDEKLLPQ 10 Unmodified _VPLDEKLLPQ_ 0 0 0 nc|ENSG00000113273|P15848-2|ARSB;ENSG00000113273|ENST00000264914|ARSB nc|ENSG00000113273|P15848-2|ARSB nc|ENSG00000113273|P15848-2|ARSB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3384399414062 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 166.03 1 166.03 165.53 166.53 0 0 0 0 0.22566 1 33768 33768 16.149 2.2431 1 51673 2734 34314 34335 50577 50577 0.09047140854386271 VPLFCHVFH 9 Unmodified _VPLFCHVFH_ 0 0 0 REV__nc|ENSG00000196535|Q92614-2|MYO18A REV__nc|ENSG00000196535|Q92614-2|MYO18A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.8576354980469 3 366.856629 1097.54806 NaN NaN NaN NaN NaN NaN NaN 14.579 1 13.464 12.964 13.964 -1.1142 0 0 0 0.23508 1 2194 2194 1.1933 0 1 + 51674 19257 34315 34336 50578 50578 0.003184280162486175 VPLKSACG 8 Unmodified _VPLKSACG_ 0 0 0 REV__ENSG00000092445|ENST00000263798|TYRO3 REV__ENSG00000092445|ENST00000263798|TYRO3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.71282958984375 2 387.712556 773.41056 0.25962 0.00010066 -0.083932 -3.2541E-05 0.17568 6.8115E-05 387.71244762254594 32.369 0.77428 30.342 29.798 30.572 -2.0264 52 21 3 0 0 0 0.76728 1 5527 5527 5.7604 2.8712 1 3819600 + 51675 14586 34316 34337 50579 50579 0.01479099416826557 VPLLALLPV 9 Unmodified _VPLLALLPV_ 0 0 0 nc|ENSG00000182175|Q96B86-3|RGMA;ENSG00000182175|ENST00000329082|RGMA;nc|ENSG00000182175|Q96B86-4|RGMA REV__nc|ENSG00000182175|Q96B86-3|RGMA REV__nc|ENSG00000182175|Q96B86-3|RGMA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.2171325683594 3 312.21604 933.62629 NaN NaN NaN NaN NaN NaN NaN 91.947 1 91.947 91.447 92.447 0 0 0 0 0.23508 1 17977 17977 0.26902 0 1 51676 18763 34317 34338 50580 50580 0.1568218387313891 VPLLKPLWL 9 Unmodified _VPLLKPLWL_ 0 0 0 REV__ENST00000341084.6_1_8:101270923-101271007:-|nuORF REV__ENST00000341084.6_1_8:101270923-101271007:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2023010253906 3 360.238956 1077.69504 NaN NaN NaN NaN NaN NaN NaN 119.49 1 119.49 118.99 119.99 0 0 0 0 0.23508 1 23544 23544 2.9952 1.253 1 + 51677 20709 34318 34339 50581 50581 0.15929848172845595 VPLLLLVPL 9 Unmodified _VPLLLLVPL_ 0 0 0 ENSG00000274209|ENST00000620264|ANTXRL ENSG00000274209|ENST00000620264|ANTXRL ENSG00000274209|ENST00000620264|ANTXRL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 326.230712890625 3 326.23169 975.67324 NaN NaN NaN NaN NaN NaN NaN 163.39 1 158.35 157.85 158.85 -5.0446 0 0 0 0.23508 1 31795 31795 0.26902 0 1 51678 8015 34319 34340 50582 50582 0.18443043424269945 VPLLLLVPLLL 11 Unmodified _VPLLLLVPLLL_ 0 0 0 ENSG00000274209|ENST00000620264|ANTXRL ENSG00000274209|ENST00000620264|ANTXRL ENSG00000274209|ENST00000620264|ANTXRL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2798461914062 2 601.927961 1201.84137 NaN NaN NaN NaN NaN NaN NaN 85.687 1 85.687 85.187 86.187 0 0 0 0 0.22632 1 16723 16723 0.00056442 0 1 51679 8015 34320 34341 50583 50583 0.24852105618083442 VPLLLLVPLLL 11 Unmodified _VPLLLLVPLLL_ 0 0 0 ENSG00000274209|ENST00000620264|ANTXRL ENSG00000274209|ENST00000620264|ANTXRL ENSG00000274209|ENST00000620264|ANTXRL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2897338867188 2 601.927961 1201.84137 NaN NaN NaN NaN NaN NaN NaN 88.212 1 84.216 83.716 84.716 -3.9953 0 0 0 0.22632 1 16800 16800 0 0 1 51680 8015 34320 34341 50584 50584 0.24852105618083442 VPLLLLVPLLL 11 Unmodified _VPLLLLVPLLL_ 0 0 0 ENSG00000274209|ENST00000620264|ANTXRL ENSG00000274209|ENST00000620264|ANTXRL ENSG00000274209|ENST00000620264|ANTXRL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2793579101562 2 601.927961 1201.84137 0.34481 0.00020755 -1.406 -0.00084634 -1.0612 -0.00063879 601.9273640853329 140.79 0.20691 135.93 135.81 136.01 -4.8678 7 5 2 0 0 0 0.89136 1 27149 27149 0 0 1 5729900 51681 8015 34320 34341 50585 50585 0.24852105618083442 VPLLVLILP 9 Unmodified _VPLLVLILP_ 0 0 0 REV__ENST00000521323.1_1_8:79710258-79717217:-|nuORF REV__ENST00000521323.1_1_8:79710258-79717217:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 326.2537536621094 3 326.23169 975.67324 NaN NaN NaN NaN NaN NaN NaN 130.42 1 125.58 125.08 126.08 -4.8355 0 0 0 0.23508 1 25041 25041 0 0 1 + 51682 14922 34321 34342 50586 50586 0.18443043424292682 VPLLVLILP 9 Unmodified _VPLLVLILP_ 0 0 0 REV__ENST00000521323.1_1_8:79710258-79717217:-|nuORF REV__ENST00000521323.1_1_8:79710258-79717217:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 326.239990234375 3 326.23169 975.67324 NaN NaN NaN NaN NaN NaN NaN 177.48 1 172.61 172.11 173.11 -4.8686 0 0 0 0.23508 1 35320 35320 0 0 1 + 51683 14922 34321 34342 50587 50587 0.18443043424292682 VPLLVLILP 9 Unmodified _VPLLVLILP_ 0 0 0 REV__ENST00000521323.1_1_8:79710258-79717217:-|nuORF REV__ENST00000521323.1_1_8:79710258-79717217:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 326.23284912109375 3 326.23169 975.67324 NaN NaN NaN NaN NaN NaN NaN 137.37 1 132.53 132.03 133.03 -4.84 0 0 0 0.23508 1 26465 26465 0 0 1 + 51684 14922 34321 34342 50588 50588 0.18443043424292682 VPLPHTWI 8 Unmodified _VPLPHTWI_ 0 0 0 REV__ENST00000593076.1_1_17:73910704-73911112:-|nuORF REV__ENST00000593076.1_1_17:73910704-73911112:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77667236328125 2 481.776545 961.538538 NaN NaN NaN NaN NaN NaN NaN 16.298 1 15.076 14.576 15.576 -1.2219 0 0 0 0.2396 1 2337 2337 0.0082765 0 1 + 51685 23355 34322 34343 50589 50589 0.056229830023767136 VPLQAALARR 10 Unmodified _VPLQAALARR_ 0 0 0 REV__ENST00000483657.1_1_2:97755791-97757446:-|nuORF REV__ENST00000483657.1_1_2:97755791-97757446:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7821655273438 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.2242 1 9.2242 8.7242 9.7242 0 0 0 0 2.8426 1 1045 1045 0 0 1 + 51686 15398 34323 34344 50590 50590 0.1289222210805292 VPLQAALARR 10 Unmodified _VPLQAALARR_ 0 0 0 REV__ENST00000483657.1_1_2:97755791-97757446:-|nuORF REV__ENST00000483657.1_1_2:97755791-97757446:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.78076171875 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.4779 1 9.4779 8.9779 9.9779 0 0 0 0 0.22588 1 1099 1099 0 0 1 + 51687 15398 34323 34344 50591 50591 0.1289222210805292 VPLQAALARR 10 Unmodified _VPLQAALARR_ 0 0 0 REV__ENST00000483657.1_1_2:97755791-97757446:-|nuORF REV__ENST00000483657.1_1_2:97755791-97757446:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.77197265625 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 11.365 1 11.365 10.865 11.865 0 0 0 0 0.22588 1 1501 1501 0 0 1 + 51688 15398 34323 34344 50592 50592 0.1289222210805292 VPLRGPAVP 9 Unmodified _VPLRGPAVP_ 0 0 0 ENST00000566786.5_1_16:56913530-56916308:+|nuORF ENST00000566786.5_1_16:56913530-56916308:+|nuORF ENST00000566786.5_1_16:56913530-56916308:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7540283203125 2 453.281995 904.549437 -0.22997 -0.00010424 0.3903 0.00017692 0.16033 7.2675E-05 453.28212979961353 109.85 2.6024 105.4 104.12 106.72 -4.4518 136 73 2 0 0 0 0.32442 1 21258 21258 2.6312 1.3017 1 3547900 51689 11371 34324 34345 50593 50593 0.09334385376655518 VPLRGPAVP 9 Unmodified _VPLRGPAVP_ 0 0 0 ENST00000566786.5_1_16:56913530-56916308:+|nuORF ENST00000566786.5_1_16:56913530-56916308:+|nuORF ENST00000566786.5_1_16:56913530-56916308:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.281995 904.549437 0.61074 0.00027684 -0.36762 -0.00016664 0.24312 0.0001102 453.2817444675408 109.32 2.63 105.14 103.97 106.6 -4.1826 -0.15833 -0.00024546 NaN 2.6312 161 74 3 NaN NaN NaN NaN 0 NaN NaN 0 3234700 51690 11371 34324 34345 0.09334385376655518 VPLRRDLPLLL 11 Unmodified _VPLRRDLPLLL_ 0 0 0 ENST00000482968.1_1_1:120282927-120286660:+|nuORF;ENSG00000092621|ENST00000641023|PHGDH ENST00000482968.1_1_1:120282927-120286660:+|nuORF ENST00000482968.1_1_1:120282927-120286660:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 327.2064514160156 4 326.965774 1303.83399 -0.16643 -5.4417E-05 -0.11476 -3.7524E-05 -0.28119 -9.1941E-05 327.2164935992638 175.6 1.9623 170.7 170.17 172.13 -4.9008 74 56 2 0 0 0 0.82662 1 35145 35145 0.094841 0 1 8647400 51691 1838 34325 34346 50594 50594 0.19422766070374564 VPLSLDYKYVY 11 Unmodified _VPLSLDYKYVY_ 0 0 0 REV__ENSG00000180902|ENST00000321264|D2HGDH REV__ENSG00000180902|ENST00000321264|D2HGDH MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7640380859375 3 453.911345 1358.7122 NaN NaN NaN NaN NaN NaN NaN 53.677 1 53.677 53.177 54.177 0 0 0 0 0.2366 1 10226 10226 3.0723 1.1448 1 + 51692 18704 34326 34347 50595 50595 0.047196791973192376 VPLVLIVFIL 10 Unmodified _VPLVLIVFIL_ 0 0 0 tr|U7SJ80|U7SJ80_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02139PE=4SV=1 tr|U7SJ80|U7SJ80_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02139PE=4SV=1 tr|U7SJ80|U7SJ80_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02139PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.9267883300781 3 375.926378 1124.7573 NaN NaN NaN NaN NaN NaN NaN 11.489 1 10.584 10.084 11.084 -0.90401 0 0 0 0.22588 1 1525 1525 0 0 1 51693 25935 34327 34348 50596 50596 0.1999157452119107 VPLWVDAE 8 Unmodified _VPLWVDAE_ 0 0 0 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 115.59 1 111.01 110.51 111.51 -4.5815 0 0 0 0.23881 1 22192 22192 0.62683 0 1 51694 6226 34328 34349 50597 50597 0.00354693631857117 VPNAEQPPPP 10 Unmodified _VPNAEQPPPP_ 0 0 0 REV__nc|ENSG00000121753|O60241-4|ADGRB2 REV__nc|ENSG00000121753|O60241-4|ADGRB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6796264648438 2 523.269281 1044.52401 -0.65956 -0.00034513 -4.1947 -0.002195 -4.8543 -0.0025401 523.2675586735279 23.272 0.38825 21.818 21.612 22 -1.4535 19 8 3 0 0 0 0.80147 1 3718 3718 26.268 11.43 1 3659900 + 51695 15665 34329 34350 50598 50598 0.0035286606357658457 VPNELRVEDP 10 Unmodified _VPNELRVEDP_ 0 0 0 REV__ENSG00000127311|ENST00000247815|HELB REV__ENSG00000127311|ENST00000247815|HELB MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 389.345703125 3 389.87166 1166.59315 -0.62725 -0.00024455 0.81344 0.00031714 0.18619 7.2591E-05 389.87194639502303 36.724 0.31534 34.255 34.049 34.365 -2.4688 14 8 2 0 0 0 0.91149 1 6778 6778 3.8763 3.2495 1 658240 + 51696 15882 34330 34351 50599 50599 0.016519052924877542 VPNELRVEDP 10 Unmodified _VPNELRVEDP_ 0 0 0 REV__ENSG00000127311|ENST00000247815|HELB REV__ENSG00000127311|ENST00000247815|HELB MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 389.87166 1166.59315 -0.08913 -3.4749E-05 0.37728 0.00014709 0.28815 0.00011234 389.87170268344585 34.324 0.44296 34.324 34.144 34.587 0 0.032991 -5.7773E-05 NaN 3.8763 25 12 4 NaN NaN NaN NaN 0 NaN NaN 0 917560 + 51697 15882 34330 34351 0.016519052924877542 VPNELRVEDP 10 Unmodified _VPNELRVEDP_ 0 0 0 REV__ENSG00000127311|ENST00000247815|HELB REV__ENSG00000127311|ENST00000247815|HELB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 389.87166 1166.59315 0.10829 4.2218E-05 0.13607 5.305E-05 0.24436 9.5268E-05 389.8716977017247 36.676 0.30689 34.328 34.14 34.447 -2.3479 0.037085 -0.00033989 NaN 3.8763 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 547150 + 51698 15882 34330 34351 0.016519052924877542 VPNELRVEDP 10 Unmodified _VPNELRVEDP_ 0 0 0 REV__ENSG00000127311|ENST00000247815|HELB REV__ENSG00000127311|ENST00000247815|HELB MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 389.87166 1166.59315 -0.35736 -0.00013933 0.53754 0.00020957 0.18018 7.0246E-05 390.2062475525695 36.595 0.4937 34.257 33.924 34.417 -2.3375 -0.033943 0.00012968 NaN 3.8763 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 782640 + 51699 15882 34330 34351 0.016519052924877542 VPNEPYGC 8 Unmodified _VPNEPYGC_ 0 0 0 REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;REV__CHD7-TCF7L2|9|fusion REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 439.6877136230469 2 439.689278 877.364004 NaN NaN NaN NaN NaN NaN NaN 163.38 1 158.59 158.09 159.09 -4.7898 0 0 0 0.22834 1 32567 32567 0.25148 0 1 + 51700 13404;13403 34331 34352 50600 50600 -0.07958385205120067 VPNLTPPA 8 Unmodified _VPNLTPPA_ 0 0 0 REV__OR14K1|p.S277Y|1|0.36|ENSG00000153230|chr1:247739444-247739444|C/A|missense_variant REV__OR14K1|p.S277Y|1|0.36|ENSG00000153230|chr1:247739444-247739444|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 405.311767578125 2 404.731803 807.449054 0.47976 0.00019418 -0.55895 -0.00022622 -0.079184 -3.2048E-05 404.73152015415803 22.521 1.4644 21.047 20.448 21.913 -1.4742 73 41 2 0 0 0 1.0035 1 3741 3741 2.8892 0 1 789640 + 51701 17142 34332 34353 50601 50601 0.03762728322988096 VPNLTPPA 8 Unmodified _VPNLTPPA_ 0 0 0 REV__OR14K1|p.S277Y|1|0.36|ENSG00000153230|chr1:247739444-247739444|C/A|missense_variant REV__OR14K1|p.S277Y|1|0.36|ENSG00000153230|chr1:247739444-247739444|C/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 404.731803 807.449054 -0.018123 -7.3349E-06 0.010978 4.4432E-06 -0.0071449 -2.8917E-06 404.73170728891444 21.07 1.4159 21.07 20.529 21.945 0 0.058089 0.00012575 NaN 2.8892 63 40 2 NaN NaN NaN NaN 0 NaN NaN 0 944510 + 51702 17142 34332 34353 0.03762728322988096 VPNSVLRF 8 Unmodified _VPNSVLRF_ 0 0 0 ENSG00000172840|ENST00000311765|PDP2 ENSG00000172840|ENST00000311765|PDP2 ENSG00000172840|ENST00000311765|PDP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.182861328125 3 311.18351 930.528701 NaN NaN NaN NaN NaN NaN NaN 99.736 1 95.439 94.939 95.939 -4.297 0 0 0 0.21486 1 19068 19068 0.40072 0 1 51703 6246 34333 34354 50602 50602 0.06065794997005014 VPPAAGGL 8 Unmodified _VPPAAGGL_ 0 0 0 REV__nc|ENSG00000103495|P56270-2|MAZ REV__nc|ENSG00000103495|P56270-2|MAZ MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 341.18182373046875 2 341.200139 680.385725 -0.68281 -0.00023297 -0.30445 -0.00010388 -0.98726 -0.00033685 341.20070294990774 62.891 0.21667 62.891 62.803 63.019 0 10 5 3 0 0 0 8448 1 12090 12090 0.12286 0 1 939000 + 51704 23982 34334 34355 50603 50603 0.03274787605744223 VPPAAGGL 8 Unmodified _VPPAAGGL_ 0 0 0 REV__nc|ENSG00000103495|P56270-2|MAZ REV__nc|ENSG00000103495|P56270-2|MAZ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 341.1863708496094 2 341.200139 680.385725 NaN NaN NaN NaN NaN NaN NaN 66.014 1 62.731 62.231 63.231 -3.2832 0 0 0 0.22722 1 12419 12419 0.68139 0.42991 1 + 51705 23982 34334 34355 50604 50604 0.03274787605744223 VPPATEEDDDE 11 Unmodified _VPPATEEDDDE_ 0 0 0 REV__PAK2|p.P185Rfs*14|1|0.2|ENSG00000180370|chr3:196806661-196806661|C/-|frameshift_variant REV__PAK2|p.P185Rfs*14|1|0.2|ENSG00000180370|chr3:196806661-196806661|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 608.6414794921875 2 608.74623 1215.47791 NaN NaN NaN NaN NaN NaN NaN 169.71 1 169.71 169.21 170.21 0 0 0 0 0.23594 1 34843 34843 3.5965 0.31518 1 + 51706 18685 34335 34356 50605 50605 -0.1212128841982576 VPPGAHLY 8 Unmodified _VPPGAHLY_ 0 0 0 REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 427.13983154296875 2 427.231971 852.449388 NaN NaN NaN NaN NaN NaN NaN 130.04 1 125.26 124.76 125.76 -4.7725 0 0 0 0.21486 1 25019 25019 6.3541 0 1 + 51707 16629 34336 34357 50606 50606 0.01726148042848763 VPPGNGIYIN 10 Unmodified _VPPGNGIYIN_ 0 0 0 CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;CSMD3|p.G3063Rfs*5|1|0.06|ENSG00000164796|chr8:112287208-112287209|-/G|frameshift_variant;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;CSMD3|p.A3641Cfs*13|1|0.36|ENSG00000164796|chr8:112228799-112228800|-/A|frameshift_variant;nc|ENSG00000164796|Q7Z407-2|CSMD3;CSMD3|p.F3640Lfs*61|7|0.35|ENSG00000164796|chr8:112228800-112228800|A/-|frameshift_variant;ENSG00000164796|ENST00000297405|CSMD3 CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2789306640625 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 165.5 1 165.5 165 166 0 0 0 0 0.22588 1 33594 33594 10.824 0 1 51708 729 34337 34358 50607 50607 0.025174564432290936 VPPHVPGF 8 Unmodified _VPPHVPGF_ 0 0 0 sp|Q7M6R1|UL21A_HCMVAUncharacterizedproteinUL21AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL21APE=3SV=1;sp|F5HH39|UL21A_HCMVMUncharacterizedproteinUL21AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL21APE=3SV=1 sp|Q7M6R1|UL21A_HCMVAUncharacterizedproteinUL21AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL21APE=3SV=1 sp|Q7M6R1|UL21A_HCMVAUncharacterizedproteinUL21AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL21APE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2352600097656 2 425.234513 848.454474 NaN NaN NaN NaN NaN NaN NaN 127.43 1 122.82 122.32 123.32 -4.6172 0 0 0 0.21486 1 25131 25131 11.114 4.7604 1 51709 25741 34338 34359 50608 50608 0.024184519054756493 VPPLEVLKL 9 Unmodified _VPPLEVLKL_ 0 0 0 nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.0447692871094 3 336.554833 1006.64267 -2.2942 -0.00077213 -0.65215 -0.00021948 -2.9464 -0.00099161 336.5545961751197 13.435 0.98185 12.315 11.586 12.568 -1.1206 44 28 3 0 0 0 0.88466 1 1553 1553 0.26902 0 1 4199600 51710 5114 34339 34360 50609 50609 0.13961265039210957 VPPLKKIL 8 Unmodified _VPPLKKIL_ 0 0 0 REV__USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant REV__USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 303.19903564453125 3 303.216151 906.626624 NaN NaN NaN NaN NaN NaN NaN 102.44 1 102.44 101.94 102.94 0 0 0 0 0.21486 1 20122 20122 0 0 1 + 51711 15779 34340 34361 50610 50610 0.16957603592982196 VPPLKKIL 8 Unmodified _VPPLKKIL_ 0 0 0 REV__USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant REV__USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 303.2069091796875 3 303.216151 906.626624 NaN NaN NaN NaN NaN NaN NaN 109.03 1 104.85 104.35 105.35 -4.1826 0 0 0 0.21486 1 20984 20984 0 0 1 + 51712 15779 34340 34361 50611 50611 0.16957603592982196 VPPLLRLVE 9 Unmodified _VPPLLRLVE_ 0 0 0 REV__ENSG00000187553|ENST00000651965|CYP26C1 REV__ENSG00000187553|ENST00000651965|CYP26C1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 346.1858215332031 3 345.890215 1034.64882 -0.47004 -0.00016258 -1.4723 -0.00050924 -1.9423 -0.00067183 345.8903306294498 125.57 1.2349 120.92 120.24 121.48 -4.6495 42 34 2 0 0 0 0.8825 1 24262 24262 0.23584 0 1 786210 + 51713 19095 34341 34362 50612 50612 0.1328778327076634 VPPLLRLVE 9 Unmodified _VPPLLRLVE_ 0 0 0 REV__ENSG00000187553|ENST00000651965|CYP26C1 REV__ENSG00000187553|ENST00000651965|CYP26C1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 345.890215 1034.64882 -0.13813 -4.7777E-05 -1.3013 -0.00045012 -1.4395 -0.0004979 346.2236151300287 125.18 0.56834 120.58 120.26 120.83 -4.5984 -0.17358 0.00021288 NaN 0.23584 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1010400 + 51714 19095 34341 34362 0.1328778327076634 VPPLLRLVE 9 Unmodified _VPPLLRLVE_ 0 0 0 REV__ENSG00000187553|ENST00000651965|CYP26C1 REV__ENSG00000187553|ENST00000651965|CYP26C1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 345.890215 1034.64882 0.32817 0.00011351 -1.7112 -0.00059188 -1.383 -0.00047836 345.88997212960413 125.53 0.60139 120.76 120.4 121.01 -4.7681 0.0056031 -0.00021239 NaN 0.23584 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 670930 + 51715 19095 34341 34362 0.1328778327076634 VPPLPPRYR 9 Unmodified _VPPLPPRYR_ 0 0 0 nc|ENSG00000162687|Q6UVM3-4|KCNT2;ENST00000610076.1_1_1:196227273-196577439:-|nuORF;nc|ENSG00000162687|Q6UVM3-3|KCNT2;nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2;KCNT2|p.N55Kfs*37|1|0.21|ENSG00000162687|chr1:196492272-196492273|-/T|frameshift_variant;KCNT2|p.A112Hfs*2|1|0.22|ENSG00000162687|chr1:196479229-196479229|C/-|frameshift_variant;ENST00000451324.6_1_1:196367785-196577439:-|nuORF nc|ENSG00000162687|Q6UVM3-4|KCNT2 nc|ENSG00000162687|Q6UVM3-4|KCNT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7769775390625 2 547.827101 1093.63965 NaN NaN NaN NaN NaN NaN NaN 20.32 1 18.935 18.435 19.435 -1.3847 0 0 0 0.1963 1 3149 3149 0.40827 0.28045 1 51716 5353 34342 34363 50613 50613 0.09657434705081869 VPPNATGP 8 Unmodified _VPPNATGP_ 0 0 0 REV__IQSEC2|p.S1474Vfs*21|2|0.43|ENSG00000124313|chrX:53234267-53234267|G/-|frameshift_variant REV__IQSEC2|p.S1474Vfs*21|2|0.43|ENSG00000124313|chrX:53234267-53234267|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 376.1181945800781 2 376.700503 751.386454 -0.0035566 -1.3398E-06 -0.094373 -3.555E-05 -0.097929 -3.689E-05 376.70042248936926 46.688 1.1762 43.802 43.357 44.533 -2.8869 93 33 4 0 0 0 1.0244 1 8477 8477 2.8892 0 1 75022000 + 51717 23672 34343 34364 50614 50614 0.0008158225480201509 VPPNATGP 8 Unmodified _VPPNATGP_ 0 0 0 REV__IQSEC2|p.S1474Vfs*21|2|0.43|ENSG00000124313|chrX:53234267-53234267|G/-|frameshift_variant REV__IQSEC2|p.S1474Vfs*21|2|0.43|ENSG00000124313|chrX:53234267-53234267|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 376.700503 751.386454 -0.27035 -0.00010184 0.2424 9.1314E-05 -0.027947 -1.0528E-05 376.7005591436298 46.692 1.2816 43.851 43.347 44.628 -2.8409 0.023744 0.00019256 NaN 2.8892 104 36 5 NaN NaN NaN NaN 0 NaN NaN 0 105150000 + 51718 23672 34343 34364 0.0008158225480201509 VPPPLDQY 8 Unmodified _VPPPLDQY_ 0 0 0 nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1 nc|ENSG00000104853|O96005-3|CLPTM1 nc|ENSG00000104853|O96005-3|CLPTM1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.17156982421875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 114.89 1 110.33 109.83 110.83 -4.555 0 0 0 0.21486 1 22059 22059 1.6526 0 1 51719 2261 34344 34365 50615 50615 0.00354693631857117 VPPPQKRMAK 10 Unmodified _VPPPQKRMAK_ 0 0 0 ENST00000415597.5_1_3:8543537-8556640:+|nuORF;ENST00000454244.4_1_3:8543555-8578921:+|nuORF;ENST00000470776.1_1_3:8543537-8579195:+|nuORF ENST00000415597.5_1_3:8543537-8556640:+|nuORF ENST00000415597.5_1_3:8543537-8556640:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3255615234375 2 576.339518 1150.66448 NaN NaN NaN NaN NaN NaN NaN 132.42 1 132.42 131.92 132.92 0 0 0 0 2.8426 1 26181 26181 0.013265 0 1 51720 9614 34345 34366 50616 50616 0.09517746516144143 VPPRIVLLILK 11 Unmodified _VPPRIVLLILK_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7798461914062 2 630.941934 1259.86931 0.3632 0.00022916 -2.2184 -0.0013997 -1.8552 -0.0011705 630.941251997632 149.35 0.20538 144.15 144.05 144.25 -5.1994 6 5 2 0 0 0 0.96215 1 28924 28924 1.0715 1.0715 1 2732500 + 51721 15487 34346 34367 50617 50617 0.24977428598162987 VPPRVKSF 8 Unmodified _VPPRVKSF_ 0 0 0 REV__ENSG00000007202|ENST00000528896|BLTP2 REV__ENSG00000007202|ENST00000528896|BLTP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2508239746094 2 465.281995 928.549437 NaN NaN NaN NaN NaN NaN NaN 76.122 1 72.488 71.988 72.988 -3.6337 0 0 0 0.21486 1 14487 14487 12.532 2.3482 1 + 51722 13884 34347 34368 50618 50618 0.08230385376668892 VPPSLKALAL 10 Unmodified _VPPSLKALAL_ 0 0 0 REV__ENST00000488250.5_1_12:48131352-48135452:-|nuORF REV__ENST00000488250.5_1_12:48131352-48135452:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.9368896484375 3 336.886582 1007.63792 -0.93174 -0.00031389 -0.11816 -3.9807E-05 -1.0499 -0.0003537 336.88528654315377 9.4893 1.7973 8.695 7.5626 9.3599 -0.79424 71 51 2 0 0 0 0.91149 1 1225 1225 0 0 1 186550 + 51723 14395 34348 34369 50619 50619 0.1344038089644073 VPPTPSLAPA 10 Unmodified _VPPTPSLAPA_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;CASZ1|p.Y1191*|1|0.04|ENSG00000130940|chr1:10646251-10646251|G/-|frameshift_variant ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 476.7756652832031 2 475.271293 948.528032 0.23518 0.00011177 0.13062 6.2081E-05 0.3658 0.00017385 475.2711228034915 103.55 0.86863 103.55 103.1 103.97 0 71 24 5 0 0 0 0.35262 1 20342 20342 3.104 1.8892 1 8424500 51724 3650 34349 34370 50620 50620 0.05170955557275647 VPPTPSLAPA 10 Unmodified _VPPTPSLAPA_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;CASZ1|p.Y1191*|1|0.04|ENSG00000130940|chr1:10646251-10646251|G/-|frameshift_variant ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 475.271293 948.528032 -0.48064 -0.00022844 0.69218 0.00032897 0.21154 0.00010054 475.27152773483704 107.58 0.87012 103.26 102.82 103.69 -4.32 -0.095607 0.00041838 NaN 3.104 58 24 3 NaN NaN NaN NaN 0 NaN NaN 0 7987200 51725 3650 34349 34370 0.05170955557275647 VPPTPSLAPA 10 Unmodified _VPPTPSLAPA_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;CASZ1|p.Y1191*|1|0.04|ENSG00000130940|chr1:10646251-10646251|G/-|frameshift_variant ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 475.271293 948.528032 -0.094507 -4.4917E-05 0.46213 0.00021964 0.36763 0.00017472 475.27135752842287 107.71 0.82925 103.3 102.85 103.68 -4.4121 -0.053944 0.00019971 NaN 3.104 75 23 5 NaN NaN NaN NaN 0 NaN NaN 0 8399100 51726 3650 34349 34370 0.05170955557275647 VPPTPSLAPA 10 Unmodified _VPPTPSLAPA_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;CASZ1|p.Y1191*|1|0.04|ENSG00000130940|chr1:10646251-10646251|G/-|frameshift_variant ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 475.271293 948.528032 0.7099 0.00033739 -0.27758 -0.00013192 0.43232 0.00020547 475.27098223303943 107.45 0.85854 103.32 102.88 103.74 -4.135 -0.04045 -0.00050342 NaN 3.104 73 24 4 NaN NaN NaN NaN 0 NaN NaN 0 8031500 51727 3650 34349 34370 0.05170955557275647 VPPVAPDLL 9 Unmodified _VPPVAPDLL_ 0 0 0 REV__SEMA6C|p.P861Lfs*37|2|0.24|ENSG00000143434|chr1:151132695-151132695|G/-|frameshift_variant REV__SEMA6C|p.P861Lfs*37|2|0.24|ENSG00000143434|chr1:151132695-151132695|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2334289550781 2 460.776211 919.537869 0.07049 3.248E-05 0.20748 9.5601E-05 0.27797 0.00012808 460.7761951946681 156.81 0.95753 152.02 151.49 152.45 -4.7885 38 26 2 0 0 0 0.67345 1 31233 31233 8.5933 3.8373 1 1243300 + 51728 16726 34350 34371 50621 50621 0.07488143562670757 VPPVGPPS 8 Unmodified _VPPVGPPS_ 0 0 0 REV__nc|ENSG00000072310|P36956-6|SREBF1 REV__nc|ENSG00000072310|P36956-6|SREBF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2126159667969 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 76.085 1 72.67 72.17 73.17 -3.4151 0 0 0 0.23366 1 14848 14848 0.12286 0 1 + 51729 14284 34351 34372 50622 50622 0.027670567772474897 VPPVLVRK 8 Unmodified _VPPVLVRK_ 0 0 0 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant;ENSG00000170145|ENST00000304987|SIK2 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 303.2074890136719 3 303.207767 906.601472 NaN NaN NaN NaN NaN NaN NaN 101.22 1 97.058 96.558 97.558 -4.1594 0 0 0 0.21486 1 19898 19898 0.40072 0 1 51730 6041 34352 34373 50623 50623 0.14443548790416116 VPPVLVRK 8 Unmodified _VPPVLVRK_ 0 0 0 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant;ENSG00000170145|ENST00000304987|SIK2 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 303.20648193359375 3 303.207767 906.601472 NaN NaN NaN NaN NaN NaN NaN 107.07 1 102.65 102.15 103.15 -4.4121 0 0 0 0.21486 1 20539 20539 0.40072 0 1 51731 6041 34352 34373 50624 50624 0.14443548790416116 VPPVLVRK 8 Unmodified _VPPVLVRK_ 0 0 0 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant;ENSG00000170145|ENST00000304987|SIK2 SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 303.2317199707031 3 303.207767 906.601472 NaN NaN NaN NaN NaN NaN NaN 98.229 1 94.272 93.772 94.772 -3.9564 0 0 0 0.21486 1 18854 18854 0.45834 0 1 51732 6041 34352 34373 50625 50625 0.14443548790416116 VPPYSSSGHR 10 Unmodified _VPPYSSSGHR_ 0 0 0 REV__ZFPM2|p.E552Gfs*4|1|0.22|ENSG00000169946|chr8:105801737-105801737|A/-|frameshift_variant REV__ZFPM2|p.E552Gfs*4|1|0.22|ENSG00000169946|chr8:105801737-105801737|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7818603515625 2 543.76998 1085.52541 NaN NaN NaN NaN NaN NaN NaN 162.33 1 162.33 161.83 162.83 0 0 0 0 2.8426 1 32632 32632 0.26539 0 1 + 51733 18131 34353 34374 50626 50626 -0.013934998476770488 VPQKCLSM 8 Unmodified _VPQKCLSM_ 0 0 0 REV__PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant REV__PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76922607421875 2 453.232799 904.451044 -0.26935 -0.00012208 -0.42598 -0.00019307 -0.69533 -0.00031515 453.2326091797194 34.561 0.44593 32.244 31.949 32.395 -2.3175 14 12 2 0 0 0 0.95284 1 6353 6353 5.2307 0 1 883530 + 51734 17143 34354 34375 50627 50627 -0.005003022550454261 VPQNPPTPL 9 Unmodified _VPQNPPTPL_ 0 0 0 ENSG00000102870|ENST00000262525|ZNF629 ENSG00000102870|ENST00000262525|ZNF629 ENSG00000102870|ENST00000262525|ZNF629 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7690734863281 2 481.768917 961.523281 0.27876 0.0001343 0.010401 5.0109E-06 0.28916 0.00013931 481.7688385227152 121.7 0.92487 117.15 116.64 117.56 -4.5476 70 25 4 0 0 0 0.55979 1 24067 24067 15.847 2.3393 1 33535000 51735 2146 34355 34376 50628 50628 0.04098071414523474 VPQPLFGEEA 10 Unmodified _VPQPLFGEEA_ 0 0 0 ENST00000592951.5_1_17:75450166-75450343:+|nuORF ENST00000592951.5_1_17:75450166-75450343:+|nuORF ENST00000592951.5_1_17:75450166-75450343:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7759399414062 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 172.98 1 172.98 172.48 173.48 0 0 0 0 0.22588 1 35741 35741 8.1555 0.8663 1 51736 11641 34356 34377 50629 50629 -2.267139211653557E-05 VPQQSHSM 8 Unmodified _VPQQSHSM_ 0 0 0 CHD7|p.P243H|1|0.1|ENSG00000171316|chr8:60742160-60742160|C/A|missense_variant CHD7|p.P243H|1|0.1|ENSG00000171316|chr8:60742160-60742160|C/A|missense_variant CHD7|p.P243H|1|0.1|ENSG00000171316|chr8:60742160-60742160|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 305.1445617675781 3 305.144727 912.412351 NaN NaN NaN NaN NaN NaN NaN 39.181 1 36.74 36.24 37.24 -2.4419 0 0 0 0.21486 1 6993 6993 0.45834 0 1 51737 520 34357 34378 50630 50630 -0.04735891565212569 VPQSPYHAMPQ 11 Unmodified _VPQSPYHAMPQ_ 0 0 0 REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 627.7363891601562 2 627.800423 1253.58629 NaN NaN NaN NaN NaN NaN NaN 167.14 1 162.35 161.85 162.85 -4.7898 0 0 0 0.23018 1 33672 33672 8.1555 0.54658 1 + 51738 23076 34358 34379 50631 50631 -0.030357308597558585 VPQTDNKE 8 Unmodified _VPQTDNKE_ 0 0 0 REV__nc|ENSG00000111783|Q33E94-4|RFX4 REV__nc|ENSG00000111783|Q33E94-4|RFX4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2553405761719 2 465.729989 929.445425 -0.17068 -7.9489E-05 -0.19852 -9.2458E-05 -0.3692 -0.00017195 465.7298427492854 110.95 0.89433 106.46 106 106.89 -4.4915 58 24 3 0 0 0 0.78482 1 21371 21371 25.399 12.868 1 5306500 + 51739 15262 34359 34380 50632 50632 -0.022119862415138414 VPQVCSCC 8 Unmodified _VPQVCSCC_ 0 0 0 nc|ENSG00000198483|Q8N283-2|ANKRD35 nc|ENSG00000198483|Q8N283-2|ANKRD35 nc|ENSG00000198483|Q8N283-2|ANKRD35 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4879150390625 1 838.325592 837.318316 0.66023 0.00055349 1.9686 0.0016504 2.6289 0.0022038 838.3289605786013 178.05 0.21123 173.26 173.1 173.31 -4.7898 6 5 2 0 0 0 0.76728 1 36413 36413 5.7604 0.52976 1 908430 51740 12551 34360 34381 50633 50633 -0.10685069983367157 VPREKSVTY 9 Unmodified _VPREKSVTY_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-2|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant ENSG00000110713|ENST00000324932|NUP98 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2012634277344 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 113.95 1 109.5 109 110 -4.4539 0 0 0 0.23508 1 22451 22451 1.1933 0 1 51741 2583;12720 34361 34382 50634 50634 0.0461712798901317 VPRENLPRPL 10 Unmodified _VPRENLPRPL_ 0 0 0 PHF14|p.K564N|1|0.09|ENSG00000106443|chr7:11036507-11036507|A/T|missense_variant PHF14|p.K564N|1|0.09|ENSG00000106443|chr7:11036507-11036507|A/T|missense_variant PHF14|p.K564N|1|0.09|ENSG00000106443|chr7:11036507-11036507|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 595.70654296875 2 595.853847 1189.69314 NaN NaN NaN NaN NaN NaN NaN 173.98 1 169.09 168.59 169.59 -4.8916 0 0 0 2.8426 1 34614 34614 0.063865 0.032455 1 51742 12781 34362 34383 50635 50635 0.10588187416919936 VPRGPAPG 8 Unmodified _VPRGPAPG_ 0 0 0 REV__ENST00000300179.6_1_7:100081575-100084449:+|nuORF REV__ENST00000300179.6_1_7:100081575-100084449:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 376.2093505859375 2 375.716488 749.418422 -0.43191 -0.00016228 1.846 0.00069357 1.4141 0.00053129 375.7170149132808 27.962 0.4866 25.966 25.752 26.238 -1.9962 15 13 2 0 0 0 0.82854 1 4704 4704 1.7423 1.0609 1 335260 + 51743 20399 34363 34384 50636 50636 0.0336899472862342 VPRIPVWRT 9 Unmodified _VPRIPVWRT_ 0 0 0 ENST00000577142.1_1_17:79649629-79649749:-|nuORF ENST00000577142.1_1_17:79649629-79649749:-|nuORF ENST00000577142.1_1_17:79649629-79649749:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21221923828125 3 375.229342 1122.6662 NaN NaN NaN NaN NaN NaN NaN 13.175 1 13.175 12.675 13.675 0 0 0 0 0.23508 1 1885 1885 0.26902 0 1 51744 11466 34364 34385 50637 50637 0.10977123596398997 VPRKLIPIT 9 Unmodified _VPRKLIPIT_ 0 0 0 ENST00000475896.5_1_3:100583650-100712249:-|nuORF;nc|ENSG00000154175|Q7Z7G0|ABI3BP;ABI3BP|p.K701Sfs*41|1|0.1|ENSG00000154175|chr3:100780137-100780137|T/-|frameshift_variant;ENSG00000154175|ENST00000471714|ABI3BP ENST00000475896.5_1_3:100583650-100712249:-|nuORF ENST00000475896.5_1_3:100583650-100712249:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 346.2778625488281 3 346.234093 1035.68045 NaN NaN NaN NaN NaN NaN NaN 69.27 1 65.88 65.38 66.38 -3.3903 0 0 0 0.23508 1 13097 13097 5.2969 1.3525 1 51745 22 34365 34386 50638 50638 0.1640377602470835 VPRKQATY 8 Unmodified _VPRKQATY_ 0 0 0 ENSG00000189046|ENST00000429722|ALKBH2 ENSG00000189046|ENST00000429722|ALKBH2 ENSG00000189046|ENST00000429722|ALKBH2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7752685546875 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 167.04 1 162.15 161.65 162.65 -4.8916 0 0 0 0.23366 1 32795 32795 0.063987 0 1 51746 7212 34366 34387 50639 50639 0.05220893508658264 VPRKVLTLRY 10 Unmodified _VPRKVLTLRY_ 0 0 0 REV__ABCA2|p.A1226V|1|0.27|ENSG00000107331|chr9:137015434-137015434|G/A|missense_variant REV__ABCA2|p.A1226V|1|0.27|ENSG00000107331|chr9:137015434-137015434|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7576293945312 2 622.895515 1243.77648 NaN NaN NaN NaN NaN NaN NaN 95.16 1 91.279 90.779 91.779 -3.881 0 0 0 2.8426 1 18260 18260 0.26539 0.2216 1 + 51747 12884 34367 34388 50640 50640 0.16433923864792632 VPRLLPRR 8 Unmodified _VPRLLPRR_ 0 0 0 ENST00000460939.5_1_11:62369776-62370417:-|nuORF;nc|ENSG00000149499|Q32P44-2|EML3 ENST00000460939.5_1_11:62369776-62370417:-|nuORF ENST00000460939.5_1_11:62369776-62370417:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 336.22491455078125 3 336.225932 1005.65597 NaN NaN NaN NaN NaN NaN NaN 7.7336 1 7.0544 6.5544 7.5544 -0.67913 0 0 0 0.21486 1 733 733 0.45834 0 1 51748 10064 34368 34389 50641 50641 0.15336560661842213 VPRLQTTDL 9 Unmodified _VPRLQTTDL_ 0 0 0 ENST00000301573.13_1_17:72691237-72694758:-|nuORF ENST00000301573.13_1_17:72691237-72694758:-|nuORF ENST00000301573.13_1_17:72691237-72694758:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.20068359375 3 348.201229 1041.58186 NaN NaN NaN NaN NaN NaN NaN 61.369 1 58.407 57.907 58.907 -2.9614 0 0 0 0.23508 1 11828 11828 2.7352 0 1 51749 8560 34369 34390 50642 50642 0.0627312798899311 VPRLRIKPI 9 Unmodified _VPRLRIKPI_ 0 0 0 ENST00000372923.7_1_9:131017318-131017513:+|nuORF ENST00000372923.7_1_9:131017318-131017513:+|nuORF ENST00000372923.7_1_9:131017318-131017513:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 546.8021240234375 2 546.374218 1090.73388 NaN NaN NaN NaN NaN NaN NaN 166.99 1 162.05 161.55 162.55 -4.948 0 0 0 0.19634 1 32800 32800 0.20686 0 1 51750 9187 34370 34391 50643 50643 0.19214573527210632 VPRMTSWF 8 Unmodified _VPRMTSWF_ 0 0 0 REV__ENST00000509378.1_1_4:165110527-165110881:+|nuORF REV__ENST00000509378.1_1_4:165110527-165110881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 342.0169677734375 3 341.840867 1022.50077 NaN NaN NaN NaN NaN NaN NaN 25.045 1 23.511 23.011 24.011 -1.5342 0 0 0 0.21486 1 4100 4100 0.45834 0 1 + 51751 22529 34371 34392 50644 50644 -0.009578512547477658 VPRPTPPPVRE 11 Unmodified _VPRPTPPPVRE_ 0 0 0 REV__CSDC2|p.H140Tfs*125|1|0.25|ENSG00000172346|chr22:41574846-41574846|C/-|frameshift_variant REV__CSDC2|p.H140Tfs*125|1|0.25|ENSG00000172346|chr22:41574846-41574846|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7613525390625 2 622.859129 1243.70371 NaN NaN NaN NaN NaN NaN NaN 171.7 1 171.7 171.2 172.2 0 0 0 0 0.23018 1 35393 35393 8.1555 0.54658 1 + 51752 13588 34372 34393 50645 50645 0.09160170071390894 VPRQFLRK 8 Unmodified _VPRQFLRK_ 0 0 0 NOD1|p.P550Lfs*64|1|0.12|ENSG00000106100|chr7:30451768-30451768|G/-|frameshift_variant;nc|ENSG00000106100|Q9Y239-3|NOD1;ENSG00000106100|ENST00000222823|NOD1 NOD1|p.P550Lfs*64|1|0.12|ENSG00000106100|chr7:30451768-30451768|G/-|frameshift_variant NOD1|p.P550Lfs*64|1|0.12|ENSG00000106100|chr7:30451768-30451768|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2822875976562 2 522.327268 1042.63998 NaN NaN NaN NaN NaN NaN NaN 143.86 1 138.94 138.44 139.44 -4.9211 0 0 0 0.21486 1 27769 27769 5.2307 0 1 51753 2362 34373 34394 50646 50646 0.12036854424945886 VPRQLYFG 8 Unmodified _VPRQLYFG_ 0 0 0 REV__ENST00000468332.6_1_10:79616610-79649212:-|nuORF REV__ENST00000468332.6_1_10:79616610-79649212:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2703552246094 2 490.271627 978.528701 NaN NaN NaN NaN NaN NaN NaN 167.17 1 162.22 161.72 162.72 -4.948 0 0 0 0.21486 1 32855 32855 10.183 0.83596 1 + 51754 21996 34374 34395 50647 50647 0.03857794996986286 VPRQRRRRRRK 11 Unmodified _VPRQRRRRRRK_ 0 0 0 CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7 CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2701416015625 3 522.004963 1562.99306 NaN NaN NaN NaN NaN NaN NaN 175.26 1 175.26 174.76 175.76 0 0 0 0 0.22632 1 36312 36312 0 0 1 51755 519 34375 34396 50648 50648 0.2340833726168512 VPRQRRRRRRK 11 Unmodified _VPRQRRRRRRK_ 0 0 0 CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7 CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2686767578125 3 522.004963 1562.99306 NaN NaN NaN NaN NaN NaN NaN 175.34 1 170.55 170.05 171.05 -4.7898 0 0 0 0.22632 1 35851 35851 0 0 1 51756 519 34375 34396 50649 50649 0.2340833726168512 VPRQRRRRRRK 11 Unmodified _VPRQRRRRRRK_ 0 0 0 CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7 CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2698364257812 3 522.004963 1562.99306 NaN NaN NaN NaN NaN NaN NaN 175.36 1 170.48 169.98 170.98 -4.8845 0 0 0 0.22632 1 34875 34875 0.094841 0.068635 1 51757 519 34375 34396 50650 50650 0.2340833726168512 VPRQRRRRRRK 11 Unmodified _VPRQRRRRRRK_ 0 0 0 CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7 CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27001953125 3 522.004963 1562.99306 NaN NaN NaN NaN NaN NaN NaN 175.38 1 170.49 169.99 170.99 -4.8916 0 0 0 0.22632 1 34956 34956 0 0 1 51758 519 34375 34396 50651 50651 0.2340833726168512 VPRRKRRNR 9 Unmodified _VPRRKRRNR_ 0 0 0 ENSG00000168135|ENST00000303592|KCNJ4 ENSG00000168135|ENST00000303592|KCNJ4 ENSG00000168135|ENST00000303592|KCNJ4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 413.2149353027344 3 413.265672 1236.77519 NaN NaN NaN NaN NaN NaN NaN 93.772 1 93.772 93.272 94.272 0 0 0 0 0.23508 1 18355 18355 1.1933 0.41681 1 51759 5882 34376 34397 50652 50652 0.1662714733924986 VPRRWQPRASW 11 Unmodified _VPRRWQPRASW_ 0 0 0 ENST00000596825.5_2_19:58740539-58741795:+|nuORF ENST00000596825.5_2_19:58740539-58741795:+|nuORF ENST00000596825.5_2_19:58740539-58741795:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.0413818359375 4 360.450823 1437.77419 -2.2939 -0.00082685 -0.10115 -3.6461E-05 -2.3951 -0.00086331 360.70175814649343 13.518 0.13315 12.308 12.241 12.374 -1.2106 5 3 2 0 0 0 0.96227 1 1727 1727 0 0 1 61628 51760 11671 34377 34398 50653 50653 0.07280888179684553 VPRSKRLPVP 10 Unmodified _VPRSKRLPVP_ 0 0 0 REV__STK10|p.T526Pfs*15|3|0.11|ENSG00000072786|chr5:172090341-172090341|T/-|frameshift_variant REV__STK10|p.T526Pfs*15|3|0.11|ENSG00000072786|chr5:172090341-172090341|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 574.62548828125 2 574.866757 1147.71896 NaN NaN NaN NaN NaN NaN NaN 165.64 1 165.64 165.14 166.14 0 0 0 0 2.8426 1 33639 33639 0.26539 0.20152 1 + 51761 14292 34378 34399 50654 50654 0.15101081659213378 VPRTVPHT 8 Unmodified _VPRTVPHT_ 0 0 0 ENST00000476056.5_1_20:43561720-43566726:+|nuORF;ENST00000465761.1_1_20:43561720-43565607:+|nuORF;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L ENST00000476056.5_1_20:43561720-43566726:+|nuORF ENST00000476056.5_1_20:43561720-43566726:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7597351074219 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 87.386 1 83.657 83.157 84.157 -3.7289 0 0 0 0.21486 1 16718 16718 9.3474 0 1 51762 2035 34379 34400 50655 50655 0.051766243371730525 VPRVRAIVR 9 Unmodified _VPRVRAIVR_ 0 0 0 REV__nc|ENSG00000140859|Q9BVG8-4|KIFC3 REV__nc|ENSG00000140859|Q9BVG8-4|KIFC3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 356.06341552734375 3 355.90497 1064.69308 0.065978 2.3482E-05 -0.24483 -8.7138E-05 -0.17886 -6.3656E-05 355.9048734763061 55.302 0.69349 52.167 51.853 52.546 -3.1352 31 19 2 0 0 0 0.87609 1 10249 10249 2.2828 1.3205 1 4907300 + 51763 16602 34380 34401 50656 50656 0.16332232207605557 VPRVSLER 8 Unmodified _VPRVSLER_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000130726|Q13263-2|TRIM28;nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000130726|Q13263-2|TRIM28 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.1943359375 3 319.194298 954.561064 NaN NaN NaN NaN NaN NaN NaN 97.049 1 92.951 92.451 93.451 -4.0978 0 0 0 0.21486 1 19040 19040 0.45834 0 1 51764 3631;4410 34381 34402 50657 50657 0.08196582400000807 VPSAPIDP 8 Unmodified _VPSAPIDP_ 0 0 0 ENST00000559662.5_1_11:125221201-125267773:+|nuORF;ENSG00000165495|ENST00000298282|PKNOX2 ENST00000559662.5_1_11:125221201-125267773:+|nuORF ENST00000559662.5_1_11:125221201-125267773:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 398.2255554199219 2 398.215986 794.417419 NaN NaN NaN NaN NaN NaN NaN 78.777 1 75.101 74.601 75.601 -3.676 0 0 0 0.21486 1 15007 15007 5.2307 0 1 51765 5634 34382 34403 50658 50658 0.011987355690393997 VPSAQVWE 8 Unmodified _VPSAQVWE_ 0 0 0 CEACAM4|p.P194Qfs*86|1|0.17|ENSG00000105352|chr19:41620589-41620589|G/-|frameshift_variant CEACAM4|p.P194Qfs*86|1|0.17|ENSG00000105352|chr19:41620589-41620589|G/-|frameshift_variant CEACAM4|p.P194Qfs*86|1|0.17|ENSG00000105352|chr19:41620589-41620589|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2329406738281 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 162.13 1 156.98 156.48 157.48 -5.1438 0 0 0 0.23366 1 31491 31491 0.063987 0 1 51766 476 34383 34404 50659 50659 -0.010864770279567892 VPSAYEQNPCD 11 Unmodified _VPSAYEQNPCD_ 0 0 0 ENST00000484590.1_1_2:9539095-9539452:+|nuORF ENST00000484590.1_1_2:9539095-9539452:+|nuORF ENST00000484590.1_1_2:9539095-9539452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 611.8903198242188 2 611.755878 1221.4972 NaN NaN NaN NaN NaN NaN NaN 167.28 1 162.39 161.89 162.89 -4.8916 0 0 0 0.23264 1 32881 32881 6.2058 0 1 51767 10432 34384 34405 50660 50660 -0.10468610609927964 VPSDSSLPSA 10 Unmodified _VPSDSSLPSA_ 0 0 0 REV__nc|ENSG00000157617|Q9Y426-2|C2CD2 REV__nc|ENSG00000157617|Q9Y426-2|C2CD2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2403564453125 2 480.237647 958.460741 0.1554 7.4629E-05 0.4202 0.00020179 0.5756 0.00027642 480.2378286486346 41.205 0.69958 41.205 40.813 41.513 0 48 19 3 0 0 0 0.51199 1 7662 7662 24.021 4.7636 1 6689200 + 51768 17302 34385 34406 50661 50661 -0.020151194443201348 VPSETRAL 8 Unmodified _VPSETRAL_ 0 0 0 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2216491699219 2 436.745442 871.476331 NaN NaN NaN NaN NaN NaN NaN 135.97 1 131.33 130.83 131.83 -4.6399 0 0 0 0.21292 1 26824 26824 14.838 0.93222 1 51769 5298 34386 34407 50662 50662 0.03545211863388431 VPSHRRVN 8 Unmodified _VPSHRRVN_ 0 0 0 INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2;INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 322.2820739746094 3 322.186025 963.536246 NaN NaN NaN NaN NaN NaN NaN 13.907 1 12.734 12.234 13.234 -1.173 0 0 0 0.21486 1 1843 1843 0.45834 0 1 51770 7535 34387 34408 50663 50663 0.05301947317275335 VPSIRLRLGSY 11 Unmodified _VPSIRLRLGSY_ 0 0 0 ENST00000400151.6_1_4:728053-728236:+|nuORF ENST00000400151.6_1_4:728053-728236:+|nuORF ENST00000400151.6_1_4:728053-728236:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7578125 2 630.874779 1259.73501 NaN NaN NaN NaN NaN NaN NaN 111.85 1 107.36 106.86 107.86 -4.4915 0 0 0 0.22632 1 21472 21472 0.172 0 1 51771 9505 34388 34409 50664 50664 0.11552743105471563 VPSKAKVV 8 Unmodified _VPSKAKVV_ 0 0 0 ENSG00000115850|ENST00000264162|LCT;LCT|p.G928Afs*16|1|0.18|ENSG00000115850|chr2:135809566-135809566|T/-|frameshift_variant;LCT|p.P1081Qfs*3|1|0.27|ENSG00000115850|chr2:135809105-135809105|G/-|frameshift_variant;LCT|p.L1181Sfs*2|1|0.04|ENSG00000115850|chr2:135808805-135808806|-/GG|frameshift_variant ENSG00000115850|ENST00000264162|LCT ENSG00000115850|ENST00000264162|LCT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 414.2691650390625 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 79.948 1 76.143 75.643 76.643 -3.8048 0 0 0 0.21486 1 15171 15171 10.183 0 1 51772 2889 34389 34410 50665 50665 0.10743580628093241 VPSNWPDSY 9 Unmodified _VPSNWPDSY_ 0 0 0 REV__ENSG00000010017|ENST00000011619|RANBP9 REV__ENSG00000010017|ENST00000011619|RANBP9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2853393554688 2 532.737814 1063.46108 0.06072 3.2348E-05 -1.2431 -0.00066225 -1.1824 -0.0006299 532.7373070079317 82.873 0.66737 79.265 78.812 79.479 -3.6079 37 18 3 0 0 0 0.87511 1 16113 16113 7.2892 3.6927 1 3073500 + 51773 13915 34390 34411 50666 50666 -0.0681169972447151 VPSRKRAT 8 Unmodified _VPSRKRAT_ 0 0 0 ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2380065917969 2 457.780151 913.545748 NaN NaN NaN NaN NaN NaN NaN 103.07 1 98.753 98.253 99.253 -4.3208 0 0 0 0.21323 1 19737 19737 14.582 2.0501 1 51774 2329 34391 34412 50667 50667 0.08551715602800414 VPSRTNPGT 9 Unmodified _VPSRTNPGT_ 0 0 0 tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1652526855469 3 310.166408 927.477394 NaN NaN NaN NaN NaN NaN NaN 158.18 1 158.18 157.68 158.68 0 0 0 0 0.19624 1 31758 31758 0.0033805 0 1 51775 26274 34392 34413 50668 50668 0.010754262322848263 VPSVPAKQC 9 Unmodified _VPSVPAKQC_ 0 0 0 APEX2|p.S314P|1|0.06|ENSG00000169188|chrX:55006818-55006818|T/C|missense_variant APEX2|p.S314P|1|0.06|ENSG00000169188|chrX:55006818-55006818|T/C|missense_variant APEX2|p.S314P|1|0.06|ENSG00000169188|chrX:55006818-55006818|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17047119140625 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 32.962 1 32.962 32.462 33.462 0 0 0 0 0.23508 1 6004 6004 2.7352 0 1 51776 182 34393 34414 50669 50669 0.018144425083505666 VPTAAEQTV 9 Unmodified _VPTAAEQTV_ 0 0 0 REV__ENSG00000168575|ENST00000520262|SLC20A2 REV__ENSG00000168575|ENST00000520262|SLC20A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2408142089844 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 173.14 1 168.35 167.85 168.85 -4.7898 0 0 0 0.21848 1 35303 35303 18.135 3.5533 1 + 51777 18037 34394 34415 50670 50670 0.010254882809022092 VPTGTVAP 8 Unmodified _VPTGTVAP_ 0 0 0 REV__MUC17|p.S1895G|1|0.19|ENSG00000169876|chr7:101037099-101037099|A/G|missense_variant REV__MUC17|p.S1895G|1|0.19|ENSG00000169876|chr7:101037099-101037099|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3911743164062 1 741.414131 740.406855 0.79962 0.00059285 -3.4124 -0.00253 -2.6127 -0.0019371 741.4094269132572 156.1 0.20647 151.32 151.23 151.43 -4.7791 6 5 2 0 0 0 0.73936 1 31053 31053 8.5933 0 1 1566200 + 51778 23890 34395 34416 50671 50671 0.026267529146139168 VPTSFLSV 8 Unmodified _VPTSFLSV_ 0 0 0 REV__nc|ENSG00000077235|Q12789-3|GTF3C1;REV__ENST00000564747.1_1_16:27472673-27473321:-|nuORF REV__ENST00000564747.1_1_16:27472673-27473321:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.23870849609375 2 425.239461 848.46437 NaN NaN NaN NaN NaN NaN NaN 119.18 1 114.74 114.24 115.24 -4.4397 0 0 0 0.21486 1 22939 22939 10.183 0 1 + 51779 14362;23097 34396 34417 50672 50672 0.03407595120188489 VPTVGINTK 9 Unmodified _VPTVGINTK_ 0 0 0 REV__ENST00000431312.2_1_22:38884357-38884444:-|nuORF REV__ENST00000431312.2_1_22:38884357-38884444:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2539978027344 2 464.776742 927.538931 0.087802 4.0808E-05 -0.70462 -0.00032749 -0.61682 -0.00028668 464.77634618458495 86.424 0.73855 82.696 82.31 83.048 -3.7289 44 20 3 0 0 0 0.095246 1 16598 16598 8.9129 1.4359 1 6686900 + 51780 21618 34397 34418 50673 50673 0.07226357931551775 VPTVLWRQP 9 Unmodified _VPTVLWRQP_ 0 0 0 REV__nc|ENSG00000163508|O95936-3|EOMES REV__nc|ENSG00000163508|O95936-3|EOMES MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7860107421875 2 548.319109 1094.62366 0.2017 0.0001106 -2.4934 -0.0013672 -2.2917 -0.0012566 548.8205313485204 158.61 0.17426 153.33 153.26 153.43 -5.2748 6 4 2 0 0 0 0.86532 1 30785 30785 2.0598 0 1 2160200 + 51781 17578 34398 34419 50674 50674 0.08013728468154113 VPTVPEKLPV 10 Unmodified _VPTVPEKLPV_ 0 0 0 REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant REV__TSHZ3|p.P674Rfs*22|1|0.36|ENSG00000121297|chr19:31277772-31277772|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2139587402344 3 360.221742 1077.6434 NaN NaN NaN NaN NaN NaN NaN 31.509 1 29.483 28.983 29.983 -2.0264 0 0 0 0.22588 1 5442 5442 0.69767 0.23933 1 + 51782 15651 34399 34420 50675 50675 0.10768059688257381 VPVAGKAR 8 Unmodified _VPVAGKAR_ 0 0 0 REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant REV__RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 398.8957824707031 2 399.253237 796.491922 NaN NaN NaN NaN NaN NaN NaN 12.984 1 11.863 11.363 12.363 -1.1206 0 0 0 0.21486 1 1598 1598 0.79363 0 1 + 51783 18410 34400 34421 50676 50676 0.08553543171080946 VPVAPAVP 8 Unmodified _VPVAPAVP_ 0 0 0 ENSG00000168874|ENST00000306279|ATOH8;nc|ENSG00000168874|Q96SQ7-2|ATOH8 ENSG00000168874|ENST00000306279|ATOH8 ENSG00000168874|ENST00000306279|ATOH8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21466064453125 2 375.231439 748.448326 NaN NaN NaN NaN NaN NaN NaN 26.755 1 25.12 24.62 25.62 -1.6347 0 0 0 0.21486 1 4452 4452 2.8892 0 1 51784 5941 34401 34422 50677 50677 0.0640393367393699 VPVAPLGAPAA 11 Unmodified _VPVAPLGAPAA_ 0 0 0 REV__ENST00000540386.5_1_11:66131737-66133984:-|nuORF REV__ENST00000540386.5_1_11:66131737-66133984:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7865295410156 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 55.575 1 52.692 52.192 53.192 -2.8837 0 0 0 0.2268 1 10638 10638 10.824 1.4765 1 + 51785 22856 34402 34423 50678 50678 0.07734948311224343 VPVCAHRF 8 Unmodified _VPVCAHRF_ 0 0 0 REV__ENST00000495356.5_1_X:153052908-153059781:-|nuORF REV__ENST00000495356.5_1_X:153052908-153059781:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647644042969 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 74.87 1 71.506 71.006 72.006 -3.3643 0 0 0 0.23837 1 14610 14610 0.12286 0 1 + 51786 14216 34403 34424 50679 50679 0.008252992936263581 VPVEQFPD 8 Unmodified _VPVEQFPD_ 0 0 0 REV__ENST00000398125.5_1_4:2931220-2931337:+|nuORF REV__ENST00000398125.5_1_4:2931220-2931337:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 930.5 1 930.456724 929.449448 0.16282 0.00015149 0.15149 0.00014096 0.31431 0.00029245 930.4566150395767 111.61 0.59434 107.12 106.93 107.52 -4.4915 29 16 2 0 0 0 8448 1 21388 21388 6.3914 0 1 4272600 + 51787 21323 34404 34425 50680 50680 -0.018098967478067607 VPVEQFPD 8 Unmodified _VPVEQFPD_ 0 0 0 REV__ENST00000398125.5_1_4:2931220-2931337:+|nuORF REV__ENST00000398125.5_1_4:2931220-2931337:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24578857421875 2 465.732 929.449448 0.61215 0.0002851 -0.2933 -0.0001366 0.31885 0.0001485 465.73165916814605 111.26 0.79968 107.03 106.76 107.56 -4.2289 54 22 4 0 0 0 0.18066 1 21393 21393 54.774 0 1 3679500 + 51788 21323 34404 34425 50681 50681 -0.018098967478067607 VPVFIGCPP 9 Unmodified _VPVFIGCPP_ 0 0 0 ENSG00000099338|ENST00000409235|CATSPERG;ENST00000412458.6_1_19:38845366-38860119:+|nuORF ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16534423828125 3 310.170213 927.48881 NaN NaN NaN NaN NaN NaN NaN 32.863 1 32.863 32.363 33.363 0 0 0 0 0.23508 1 5983 5983 2.9952 1.151 1 51789 1888 34405 34426 50682 50682 0.02216532002069016 VPVKGGMS 8 Unmodified _VPVKGGMS_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.712646484375 2 387.712556 773.41056 -0.067112 -2.602E-05 0.40807 0.00015821 0.34095 0.00013219 387.7126218295148 30.237 0.80643 30.237 29.919 30.725 0 47 22 3 0 0 0 0.83271 1 5481 5481 2.8892 0 1 4281500 + 51790 14487 34406 34427 50683 50683 0.014790994168379257 VPVKGGMS 8 Unmodified _VPVKGGMS_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7125244140625 2 387.712556 773.41056 -0.039003 -1.5122E-05 0.27704 0.00010741 0.23804 9.2289E-05 387.71258231601615 32.286 0.78275 30.056 29.724 30.507 -2.2305 54 21 3 0 0 0 0.83271 1 5885 5885 2.8892 0 1 3587300 + 51791 14487 34406 34427 50684 50684 0.014790994168379257 VPVKGGMS 8 Unmodified _VPVKGGMS_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7126159667969 2 387.712556 773.41056 -0.18287 -7.0902E-05 0.2635 0.00010216 0.080624 3.1259E-05 387.71265209804034 32.267 0.83207 30.119 29.795 30.627 -2.1483 52 23 4 0 0 0 0.83271 1 5590 5590 2.8892 0 1 2915400 + 51792 14487 34406 34427 50685 50685 0.014790994168379257 VPVKGTMET 9 Unmodified _VPVKGTMET_ 0 0 0 ENSG00000205108|ENST00000378788|FAM205A ENSG00000205108|ENST00000378788|FAM205A ENSG00000205108|ENST00000378788|FAM205A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25482177734375 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 179.04 1 179.04 178.54 179.54 0 0 0 0 0.23508 1 37087 37087 0.52476 0 1 51793 7629 34407 34428 50686 50686 0.013190054429401243 VPVKTAEY 8 Unmodified _VPVKTAEY_ 0 0 0 nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3 nc|ENSG00000083067|Q9HCF6-8|TRPM3 nc|ENSG00000083067|Q9HCF6-8|TRPM3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7496032714844 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 128.83 1 124.09 123.59 124.59 -4.7408 0 0 0 0.21181 1 24790 24790 15.768 0 1 51794 1646 34408 34429 50687 50687 0.02930980148892104 VPVKVILHKKR 11 Unmodified _VPVKVILHKKR_ 0 0 0 ENSG00000148483|ENST00000377495|TMEM236 ENSG00000148483|ENST00000377495|TMEM236 ENSG00000148483|ENST00000377495|TMEM236 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 658.969482421875 2 658.948082 1315.88161 NaN NaN NaN NaN NaN NaN NaN 165.99 1 161.2 160.7 161.7 -4.7898 0 0 0 0.22632 1 33289 33289 0.00056442 0 1 51795 4746 34409 34430 50688 50688 0.23630465061182804 VPVLLLLLLLP 11 Unmodified _VPVLLLLLLLP_ 0 0 0 REV__nc|ENSG00000143590|P52797-2|EFNA3 REV__nc|ENSG00000143590|P52797-2|EFNA3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2813720703125 2 601.927961 1201.84137 NaN NaN NaN NaN NaN NaN NaN 71.234 1 67.985 67.485 68.485 -3.2492 0 0 0 0.22632 1 13866 13866 0 0 1 + 51796 16740 34410 34431 50689 50689 0.2485210561810618 VPVLLLLLLLP 11 Unmodified _VPVLLLLLLLP_ 0 0 0 REV__nc|ENSG00000143590|P52797-2|EFNA3 REV__nc|ENSG00000143590|P52797-2|EFNA3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2813720703125 2 601.927961 1201.84137 NaN NaN NaN NaN NaN NaN NaN 71.245 1 67.996 67.496 68.496 -3.2492 0 0 0 0.23698 1 13868 13868 0 0 1 + 51797 16740 34410 34431 50690 50690 0.2485210561810618 VPVLLLLLLLP 11 Unmodified _VPVLLLLLLLP_ 0 0 0 REV__nc|ENSG00000143590|P52797-2|EFNA3 REV__nc|ENSG00000143590|P52797-2|EFNA3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.27294921875 2 601.927961 1201.84137 NaN NaN NaN NaN NaN NaN NaN 71.289 1 68.04 67.54 68.54 -3.2492 0 0 0 0.23698 1 13877 13877 0 0 1 + 51798 16740 34410 34431 50691 50691 0.2485210561810618 VPVLLLLLLLP 11 Unmodified _VPVLLLLLLLP_ 0 0 0 REV__nc|ENSG00000143590|P52797-2|EFNA3 REV__nc|ENSG00000143590|P52797-2|EFNA3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.283447265625 2 601.927961 1201.84137 0.50931 0.00030657 0.37595 0.00022629 0.88525 0.00053286 602.4284958070366 155.63 0.17639 150.34 150.22 150.4 -5.2854 6 4 2 0 0 0 0.96205 1 30169 30169 0 0 1 807900 + 51799 16740 34410 34431 50692 50692 0.2485210561810618 VPVLSPQSC 9 Unmodified _VPVLSPQSC_ 0 0 0 ENST00000464682.2_1_12:2986445-2997622:+|nuORF;nc|ENSG00000171792|Q9BSD3-2|RHNO1;ENSG00000171792|ENST00000489288|RHNO1 ENST00000464682.2_1_12:2986445-2997622:+|nuORF ENST00000464682.2_1_12:2986445-2997622:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2416687011719 2 465.241678 928.468803 0.13341 6.207E-05 0.018002 8.3752E-06 0.15142 7.0445E-05 465.2415907498055 123.05 0.75278 118.48 118.13 118.89 -4.5757 31 20 2 0 0 0 0.45972 1 24300 24300 8.1555 1.6686 1 1354600 51800 6169 34411 34432 50693 50693 0.0017073627144554848 VPVPLLPPP 9 Unmodified _VPVPLLPPP_ 0 0 0 REV__ENST00000508607.1_1_17:47783564-47785273:-|nuORF REV__ENST00000508607.1_1_17:47783564-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 71.87 1 71.87 71.37 72.37 0 0 0 0 0.19665 1 13928 13928 0.40827 0 1 + 51801 21656 34412 34433 50694 50694 0.11265324321982462 VPVPLLPPP 9 Unmodified _VPVPLLPPP_ 0 0 0 REV__ENST00000508607.1_1_17:47783564-47785273:-|nuORF REV__ENST00000508607.1_1_17:47783564-47785273:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 128.86 1 124.23 123.73 124.73 -4.6292 0 0 0 0.23508 1 25406 25406 2.9952 0 1 + 51802 21656 34412 34433 50695 50695 0.11265324321982462 VPVPLSITLVG 11 Unmodified _VPVPLSITLVG_ 0 0 0 REV__ENSG00000104848|ENST00000221444|KCNA7 REV__ENSG00000104848|ENST00000221444|KCNA7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7927856445312 2 547.844625 1093.6747 NaN NaN NaN NaN NaN NaN NaN 132.88 1 128.08 127.58 128.58 -4.799 0 0 0 0.23634 1 25574 25574 3.2813 0 1 + 51803 14946 34413 34434 50696 50696 0.13160632722360788 VPVQQTLNEFA 11 Unmodified _VPVQQTLNEFA_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7592163085938 2 623.327328 1244.6401 0.40678 0.00025356 -4.3948 -0.0027394 -3.988 -0.0024858 623.825279912573 157.64 0.17337 157.64 157.48 157.65 0 5 4 2 0 0 0 0.93546 1 31632 31632 2.4985 0 1 3037500 + 51804 13904 34414 34435 50697 50697 0.02756764843638848 VPVRFPSGP 9 Unmodified _VPVRFPSGP_ 0 0 0 REV__FLNC|p.H2471Tfs*58|1|0.18|ENSG00000128591|chr7:128856767-128856767|C/-|frameshift_variant;REV__nc|ENSG00000136068|O75369-7|FLNB REV__nc|ENSG00000136068|O75369-7|FLNB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73809814453125 2 478.271627 954.528701 NaN NaN NaN NaN NaN NaN NaN 54.522 1 54.522 54.022 55.022 0 0 0 0 0.19652 1 10398 10398 0.12781 0 1 + 51805 16311;15927 34415 34436 50698 50698 0.049617949970070185 VPVRIIFPRPR 11 Unmodified _VPVRIIFPRPR_ 0 0 0 REV__ENST00000380636.1_1_X:12993272-12993455:+|nuORF REV__ENST00000380636.1_1_X:12993272-12993455:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 675.58837890625 2 675.430056 1348.84556 1.0307 0.00069616 -0.32894 -0.00022217 0.70176 0.00047399 675.427810754219 163.95 0.17548 159.16 159.02 159.2 -4.7898 5 4 2 0 0 0 0.96166 1 32695 32695 1.3295 1.0225 1 11081000 + 51806 21157 34416 34437 50699 50699 0.18509007884358653 VPVRLPRRV 9 Unmodified _VPVRLPRRV_ 0 0 0 REV__sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1 REV__sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 545.894287109375 2 546.361642 1090.70873 NaN NaN NaN NaN NaN NaN NaN 172.62 1 167.83 167.33 168.33 -4.7898 0 0 0 0.19624 1 35174 35174 0.0033805 0 1 + 51807 24712 34417 34438 50700 50700 0.16700518724655922 VPVVNDVNP 9 Unmodified _VPVVNDVNP_ 0 0 0 ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000568712.1_1_15:79063704-79103562:-|nuORF;ADAMTS7|p.L864Wfs*93|2|0.38|ENSG00000136378|chr15:78768188-78768188|G/-|frameshift_variant ENSG00000136378|ENST00000388820|ADAMTS7 ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 476.7344055175781 2 476.758549 951.502546 0.49884 0.00023783 -0.57033 -0.00027191 -0.071482 -3.408E-05 476.7583497787227 116.27 0.3566 111.91 111.74 112.09 -4.3585 12 9 2 0 0 0 0.45496 1 22361 22361 10.899 9.6841 1 1082000 51808 4007 34418 34439 50701 50701 0.0248548103485291 VPVVNDVNP 9 Unmodified _VPVVNDVNP_ 0 0 0 ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000568712.1_1_15:79063704-79103562:-|nuORF;ADAMTS7|p.L864Wfs*93|2|0.38|ENSG00000136378|chr15:78768188-78768188|G/-|frameshift_variant ENSG00000136378|ENST00000388820|ADAMTS7 ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 476.758549 951.502546 0.077553 3.6974E-05 -0.10953 -5.2217E-05 -0.031972 -1.5243E-05 476.75851991982984 116.35 0.63199 111.87 111.65 112.29 -4.486 -0.022626 0.00021693 NaN 10.899 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1083500 51809 4007 34418 34439 0.0248548103485291 VPVWLLLLL 9 Unmodified _VPVWLLLLL_ 0 0 0 ENSG00000138073|ENST00000260643|PREB ENSG00000138073|ENST00000260643|PREB ENSG00000138073|ENST00000260643|PREB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.268798828125 2 533.357171 1064.69979 NaN NaN NaN NaN NaN NaN NaN 156.9 1 151.63 151.13 152.13 -5.2712 0 0 0 0.23508 1 30437 30437 2.3027 0 1 51810 4145 34419 34440 50702 50702 0.17002732315609137 VPWINYFQLW 10 Unmodified _VPWINYFQLW_ 0 0 0 CSTL1|p.M121V|1|0.22|ENSG00000125823|chr20:23444801-23444801|A/G|missense_variant CSTL1|p.M121V|1|0.22|ENSG00000125823|chr20:23444801-23444801|A/G|missense_variant CSTL1|p.M121V|1|0.22|ENSG00000125823|chr20:23444801-23444801|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 455.90386962890625 3 455.904524 1364.69174 NaN NaN NaN NaN NaN NaN NaN 22.168 1 22.168 21.668 22.668 0 0 0 0 0.22588 1 3740 3740 0.77653 0 1 51811 738 34420 34441 50703 50703 0.023985533281802418 VPWNYHEPQP 10 Unmodified _VPWNYHEPQP_ 0 0 0 GLB1L|p.G132Vfs*14|1|0.19|ENSG00000163521|chr2:219242570-219242570|C/-|frameshift_variant;nc|ENSG00000163521|Q6UWU2-2|GLB1L;ENSG00000163521|ENST00000295759|GLB1L GLB1L|p.G132Vfs*14|1|0.19|ENSG00000163521|chr2:219242570-219242570|C/-|frameshift_variant GLB1L|p.G132Vfs*14|1|0.19|ENSG00000163521|chr2:219242570-219242570|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 633.9644165039062 2 633.798737 1265.58292 0.74279 0.00047078 -3.6691 -0.0023255 -2.9263 -0.0018547 634.2969542875384 167.1 0.13864 162.21 162.12 162.26 -4.8916 5 3 2 0 0 0 0.86261 1 32791 32791 10.824 7.8287 1 9854900 51812 5437 34421 34442 50704 50704 -0.03924657642096463 VPWRLLKLEIL 11 Unmodified _VPWRLLKLEIL_ 0 0 0 MED14|p.S625Lfs*16|1|0.05|ENSG00000180182|chrX:40692290-40692291|-/ACAG|frameshift_variant;ENSG00000180182|ENST00000324817|MED14 MED14|p.S625Lfs*16|1|0.05|ENSG00000180182|chrX:40692290-40692291|-/ACAG|frameshift_variant MED14|p.S625Lfs*16|1|0.05|ENSG00000180182|chrX:40692290-40692291|-/ACAG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 345.1369323730469 4 345.724787 1378.87004 -0.30175 -0.00010432 1.053 0.00036405 0.75124 0.00025972 345.72509224014834 97.225 0.76234 97.225 96.979 97.742 0 31 21 2 0 0 0 0.96227 1 19033 19033 0.094841 0 1 1548600 51813 6659 34422 34443 50705 50705 0.19576223247236157 VPWRRRRQRWL 11 Unmodified _VPWRRRRQRWL_ 0 0 0 REV__ENST00000264010.8_1_16:67596501-67605146:+|nuORF REV__ENST00000264010.8_1_16:67596501-67605146:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 537.000244140625 3 536.986798 1607.93856 NaN NaN NaN NaN NaN NaN NaN 163.43 1 163.43 162.93 163.93 0 0 0 0 0.22632 1 32941 32941 0.094841 0.087559 1 + 51814 20222 34423 34444 50706 50706 0.15891325390293787 VPYCAPTPV 9 Unmodified _VPYCAPTPV_ 0 0 0 REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|91|3|anti-sense REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|91|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.16033935546875 3 316.161606 945.462989 NaN NaN NaN NaN NaN NaN NaN 34.415 1 32.163 31.663 32.663 -2.2527 0 0 0 0.23508 1 6035 6035 5.2969 0 1 + 51815 24793 34424 34445 50707 50707 -0.0119236224022643 VPYDPSFD 8 Unmodified _VPYDPSFD_ 0 0 0 ENST00000595588.5_2_2:98290935-98319166:+|nuORF;ENST00000601509.5_2_2:98287946-98319166:+|nuORF;ENSG00000228486|ENST00000627399|C2orf92 ENST00000595588.5_2_2:98290935-98319166:+|nuORF ENST00000595588.5_2_2:98290935-98319166:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.8075866699219 3 313.807998 938.402163 NaN NaN NaN NaN NaN NaN NaN 36.14 1 33.746 33.246 34.246 -2.3938 0 0 0 0.21486 1 6669 6669 1.8442 0 1 51816 7799 34425 34446 50708 50708 -0.06950176018813181 VPYGLGGV 8 Unmodified _VPYGLGGV_ 0 0 0 ENSG00000125285|ENST00000376945|SOX21 ENSG00000125285|ENST00000376945|SOX21 ENSG00000125285|ENST00000376945|SOX21 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21368408203125 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 162.8 1 157.61 157.11 158.11 -5.1878 0 0 0 0.21486 1 31630 31630 6.3541 3.4649 1 51817 3347 34426 34447 50709 50709 0.022150567772428076 VPYTVSWVK 9 Unmodified _VPYTVSWVK_ 0 0 0 CD83|p.L185Sfs*10|1|0.36|ENSG00000112149|chr6:14135167-14135167|T/-|frameshift_variant;ENSG00000112149|ENST00000379153|CD83 CD83|p.L185Sfs*10|1|0.36|ENSG00000112149|chr6:14135167-14135167|T/-|frameshift_variant CD83|p.L185Sfs*10|1|0.36|ENSG00000112149|chr6:14135167-14135167|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 160.01 1 154.78 154.28 155.28 -5.2299 0 0 0 0.23508 1 31059 31059 1.1933 0 1 51818 449 34427 34448 50710 50710 0.05019217482708882 VQAAKKRK 8 Unmodified _VQAAKKRK_ 0 0 0 REV__ENSG00000185298|ENST00000329214|CCDC137 REV__ENSG00000185298|ENST00000329214|CCDC137 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25604248046875 2 464.806168 927.597784 NaN NaN NaN NaN NaN NaN NaN 161.88 1 157.09 156.59 157.59 -4.7898 0 0 0 0.21486 1 32195 32195 2.5775 0 1 + 51819 18956 34428 34449 50711 50711 0.1310887901655633 VQAELERQA 9 Unmodified _VQAELERQA_ 0 0 0 REV__ENSG00000171219|ENST00000342711|CDC42BPG REV__ENSG00000171219|ENST00000342711|CDC42BPG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2775268554688 2 522.277638 1042.54072 -0.48374 -0.00025264 0.17606 9.1953E-05 -0.30768 -0.00016069 522.2778379952547 99.287 0.729 95.018 94.682 95.411 -4.2692 33 20 2 0 0 0 0.12505 1 18972 18972 47.749 3.9763 1 4186800 + 51820 18211 34429 34450 50712 50712 0.021153669495333816 VQAELERQA 9 Unmodified _VQAELERQA_ 0 0 0 REV__ENSG00000171219|ENST00000342711|CDC42BPG REV__ENSG00000171219|ENST00000342711|CDC42BPG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2772827148438 2 522.277638 1042.54072 0.22427 0.00011713 -0.39713 -0.00020741 -0.17286 -9.0281E-05 522.2775102360081 98.955 0.7858 94.999 94.696 95.482 -3.9564 46 22 3 0 0 0 0.09885 2 19001 19001;19052 56.177 7.8312 1 3883700 + 51821 18211 34429 34450 50713;50714 50713 0.021153669495333816 VQAELERQA 9 Unmodified _VQAELERQA_ 0 0 0 REV__ENSG00000171219|ENST00000342711|CDC42BPG REV__ENSG00000171219|ENST00000342711|CDC42BPG MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 522.277638 1042.54072 0.037608 1.9642E-05 -0.73376 -0.00038323 -0.69615 -0.00036358 522.2773790418958 95.316 0.58575 95.316 95.042 95.628 0 0.24177 -0.00054945 NaN 56.177 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1865000 + 51822 18211 34429 34450 0.021153669495333816 VQAESTRAAGP 11 Unmodified _VQAESTRAAGP_ 0 0 0 ENST00000377893.2_1_1:6308175-6308463:-|nuORF ENST00000377893.2_1_1:6308175-6308463:-|nuORF ENST00000377893.2_1_1:6308175-6308463:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.777587890625 2 543.780544 1085.54654 NaN NaN NaN NaN NaN NaN NaN 90.149 1 90.149 89.649 90.649 0 0 0 0 0.22632 1 17610 17610 8.4443 8.371 1 51823 9270 34430 34451 50715 50715 0.0071846546118194965 VQANVSKSS 9 Unmodified _VQANVSKSS_ 0 0 0 REV__nc|ENSG00000026103|P25445-3|FAS REV__nc|ENSG00000026103|P25445-3|FAS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24761962890625 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 38.453 1 38.453 37.953 38.953 0 0 0 0 0.20628 1 7131 7131 21.747 4.8044 1 + 51824 14004 34431 34452 50716 50716 0.014560065124328503 VQAQLEARE 9 Unmodified _VQAQLEARE_ 0 0 0 REV__ENSG00000090372|ENST00000263280|STRN4 REV__ENSG00000090372|ENST00000263280|STRN4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2796630859375 2 522.277638 1042.54072 NaN NaN NaN NaN NaN NaN NaN 112.21 1 107.94 107.44 108.44 -4.2725 0 0 0 0.14843 1 21605 21605 30.637 1.555 1 + 51825 14545 34432 34453 50717 50717 0.021153669495106442 VQATIEILENL 11 Unmodified _VQATIEILENL_ 0 0 0 REV__tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1 REV__tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7545166015625 2 621.850635 1241.68672 0.6545 0.000407 -0.66084 -0.00041094 -0.0063373 -3.9408E-06 621.8504384763346 162.11 0.58632 156.92 156.47 157.06 -5.1878 40 16 3 0 0 0 0.67257 1 31495 31495 13.615 1.3742 1 6563500 + 51826 25020 34433 34454 50718 50718 0.07554204674920584 VQATIEILENL 11 Unmodified _VQATIEILENL_ 0 0 0 REV__tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1 REV__tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 621.850635 1241.68672 0.40563 0.00025224 0.34781 0.00021628 0.75344 0.00046853 621.8509201237891 156.7 0.61371 156.7 156.31 156.93 0 -0.14218 0.00051282 NaN 13.615 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 14187000 + 51827 25020 34433 34454 0.07554204674920584 VQATIEILENL 11 Unmodified _VQATIEILENL_ 0 0 0 REV__tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1 REV__tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 621.850635 1241.68672 0.43234 0.00026885 0.043509 2.7056E-05 0.47585 0.0002959 621.8507347313649 162.06 0.64523 156.91 156.59 157.23 -5.1438 0.068356 0.00013436 NaN 13.615 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 10755000 + 51828 25020 34433 34454 0.07554204674920584 VQATIEILENL 11 Unmodified _VQATIEILENL_ 0 0 0 REV__tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1 REV__tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 621.850635 1241.68672 0.6545 0.000407 -0.66084 -0.00041094 -0.0063373 -3.9408E-06 621.8504384763346 162.11 0.58632 156.92 156.47 157.06 -5.1878 0.073826 -0.00074164 NaN 13.615 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 6563500 + 51829 25020 34433 34454 0.07554204674920584 VQAVRPND 8 Unmodified _VQAVRPND_ 0 0 0 REV__ENST00000507603.1_1_4:75230965-75246855:+|nuORF REV__ENST00000507603.1_1_4:75230965-75246855:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 450.1352844238281 2 449.740691 897.466829 0.090222 4.0577E-05 0.53458 0.00024042 0.6248 0.000281 449.74063266497586 83.696 0.60773 79.822 79.641 80.249 -3.8736 21 16 2 0 0 0 0.96284 1 15885 15885 4.756 0 1 1172800 + 51830 15800 34434 34455 50719 50719 0.013994435778499792 VQCDEMDCT 9 Unmodified _VQCDEMDCT_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2567749023438 2 522.17756 1042.34057 0.20381 0.00010643 2.49 0.0013002 2.6938 0.0014066 522.1781347372072 136.7 0.21387 136.7 136.58 136.8 0 6 5 2 0 0 0 0.88278 1 27076 27076 0 0 1 3685500 51831 3871 34435 34456 50720 50720 -0.17890935096261273 VQDAVDALM 9 Unmodified _VQDAVDALM_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.23724365234375 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 130.48 1 125.84 125.34 126.34 -4.6359 0 0 0 0.22621 1 25712 25712 15.847 4.2069 1 51832 1971 34436 34457 50721 50721 -0.023178714537948508 VQDEESIDI 9 Unmodified _VQDEESIDI_ 0 0 0 REV__nc|ENSG00000149100|Q7L2H7-2|EIF3M REV__nc|ENSG00000149100|Q7L2H7-2|EIF3M MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6882934570312 2 524.245669 1046.47678 -0.2924 -0.00015329 0.91475 0.00047955 0.62235 0.00032626 524.2463473937433 127.57 0.3166 122.77 122.63 122.95 -4.7958 13 8 3 0 0 0 0.81703 1 24504 24504 14.838 0 1 1238000 + 51833 24092 34437 34458 50722 50722 -0.04459457998086691 VQDLKKQP 8 Unmodified _VQDLKKQP_ 0 0 0 nc|ENSG00000182732|P49758-12|RGS6;nc|ENSG00000182732|P49758-6|RGS6;nc|ENSG00000182732|P49758-11|RGS6;nc|ENSG00000182732|P49758-7|RGS6;nc|ENSG00000182732|P49758-10|RGS6;nc|ENSG00000182732|P49758-9|RGS6;nc|ENSG00000182732|P49758-16|RGS6;nc|ENSG00000182732|P49758-5|RGS6;nc|ENSG00000182732|P49758-8|RGS6;nc|ENSG00000182732|P49758|RGS6;nc|ENSG00000182732|P49758-13|RGS6;nc|ENSG00000182732|P49758-14|RGS6;nc|ENSG00000182732|P49758-15|RGS6;nc|ENSG00000182732|P49758-2|RGS6;ENSG00000182732|ENST00000553525|RGS6 nc|ENSG00000182732|P49758-12|RGS6 nc|ENSG00000182732|P49758-12|RGS6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7260437011719 2 478.282192 954.549831 0.33029 0.00015797 -1.0379 -0.00049641 -0.70761 -0.00033844 478.28163445527497 67.492 0.55223 64.165 63.866 64.419 -3.3268 22 15 2 0 0 0 0.99494 1 12673 12673 8.5933 3.8373 1 643720 51834 6807 34438 34459 50723 50723 0.0707376030584328 VQDLLDAGTY 10 Unmodified _VQDLLDAGTY_ 0 0 0 KIDINS220|p.T654Hfs*34|1|0.2|ENSG00000134313|chr2:8786010-8786010|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-3|KIDINS220;KIDINS220|p.P1081Rfs*48|1|0.22|ENSG00000134313|chr2:8750284-8750284|G/-|frameshift_variant;KIDINS220|p.R1551Efs*38|1|0.08|ENSG00000134313|chr2:8731386-8731386|C/-|frameshift_variant;KIDINS220|p.K1581Rfs*8|1|0.28|ENSG00000134313|chr2:8731294-8731294|T/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220;ENST00000471275.1_1_2:8940499-8946457:-|nuORF KIDINS220|p.T654Hfs*34|1|0.2|ENSG00000134313|chr2:8786010-8786010|T/-|frameshift_variant KIDINS220|p.T654Hfs*34|1|0.2|ENSG00000134313|chr2:8786010-8786010|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.772705078125 2 547.771854 1093.52915 0.54468 0.00029836 0.52933 0.00028995 1.074 0.00058831 547.7723670110905 82.702 0.2708 82.702 82.568 82.839 0 12 7 2 0 0 0 0.6817 1 16146 16146 13.042 0.80181 1 1231700 51835 3844 34439 34460 50724 50724 -0.01386874864465426 VQDLLDFKD 9 Unmodified _VQDLLDFKD_ 0 0 0 nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7855834960938 2 546.782222 1091.54989 0.52441 0.00028674 0.35823 0.00019588 0.88265 0.00048262 546.7824047300526 83.018 0.58318 83.018 82.67 83.253 0 37 16 3 0 0 0 0.50419 1 16184 16184 19.362 1.2156 1 12251000 51836 4267 34440 34461 50725 50725 0.007777155151870829 VQDLLDFKD 9 Unmodified _VQDLLDFKD_ 0 0 0 nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7860107421875 2 546.782222 1091.54989 0.32022 0.00017509 0.81518 0.00044573 1.1354 0.00062082 546.782707162156 86.988 0.66821 83.037 82.79 83.458 -3.9503 48 16 4 0 0 0 0.45059 1 16572 16572 22.658 4.5117 1 12381000 51837 4267 34440 34461 50726 50726 0.007777155151870829 VQDLLDFKD 9 Unmodified _VQDLLDFKD_ 0 0 0 nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.786865234375 2 546.782222 1091.54989 0.18861 0.00010313 1.5989 0.00087427 1.7875 0.0009774 546.7829102287636 86.753 0.80914 83.024 82.8 83.609 -3.7289 49 20 4 0 0 0 0.35429 1 16634 16634 28.495 0.86571 1 7762600 51838 4267 34440 34461 50727 50727 0.007777155151870829 VQDLLDFKD 9 Unmodified _VQDLLDFKD_ 0 0 0 nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.782222 1091.54989 0.52441 0.00028674 0.35823 0.00019588 0.88265 0.00048262 546.7824047300526 83.018 0.58318 83.018 82.67 83.253 0 -0.02454 -0.00065664 NaN 28.495 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 12251000 51839 4267 34440 34461 0.007777155151870829 VQDLLDFKD 9 Unmodified _VQDLLDFKD_ 0 0 0 nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.782222 1091.54989 0.13361 7.3056E-05 1.1957 0.00065377 1.3293 0.00072683 546.782919014991 86.818 0.5964 83.091 82.872 83.468 -3.727 0.048561 0.00025915 NaN 28.495 43 16 4 NaN NaN NaN NaN 0 NaN NaN 0 10977000 51840 4267 34440 34461 0.007777155151870829 VQDNLPFFL 9 Unmodified _VQDNLPFFL_ 0 0 0 ENSG00000177839|ENST00000316105|PCDHB9 ENSG00000177839|ENST00000316105|PCDHB9 ENSG00000177839|ENST00000316105|PCDHB9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7922973632812 2 546.78985 1091.56515 0.67388 0.00036847 -0.98835 -0.00054042 -0.31447 -0.00017195 546.7893749278883 103.79 0.83607 103.79 103.31 104.14 0 55 22 3 0 0 0 0.60061 1 20421 20421 13.042 13.042 1 18199000 51841 6541 34441 34462 50728 50728 0.023026271030403223 VQDQLVGL 8 Unmodified _VQDQLVGL_ 0 0 0 REV__ENST00000261651.6_1_17:16836498-16836582:-|nuORF REV__ENST00000261651.6_1_17:16836498-16836582:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22857666015625 2 436.247818 870.481082 0.11981 5.2265E-05 -0.063102 -2.7528E-05 0.056704 2.4737E-05 436.247701910835 97.571 0.68692 93.336 92.916 93.603 -4.2348 46 19 3 0 0 0 0.62642 1 18669 18669 20.454 1.1966 1 6322600 + 51842 20188 34442 34463 50729 50729 0.04066096006158659 VQEARCPA 8 Unmodified _VQEARCPA_ 0 0 0 nc|ENSG00000160856|Q96P31-5|FCRL3;ENST00000494724.5_1_1:157667081-157670285:-|nuORF nc|ENSG00000160856|Q96P31-5|FCRL3 nc|ENSG00000160856|Q96P31-5|FCRL3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21826171875 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 97.282 1 93.363 92.863 93.863 -3.9194 0 0 0 0.21039 1 18669 18669 16.942 4.4107 1 51843 10561 34443 34464 50730 50730 -0.023875877026057424 VQEFIRTPKS 10 Unmodified _VQEFIRTPKS_ 0 0 0 ENST00000481736.5_1_1:24122200-24122398:-|nuORF ENST00000481736.5_1_1:24122200-24122398:-|nuORF ENST00000481736.5_1_1:24122200-24122398:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2881469726562 2 602.837862 1203.66117 0.40073 0.00024158 2.9679 0.0017892 3.3686 0.0020307 603.3410015340431 135.59 0.17848 130.69 130.6 130.78 -4.8951 6 4 2 0 0 0 0.88533 1 26045 26045 13.042 0.80181 1 2178200 51844 10381 34444 34465 50731 50731 0.06748774943139324 VQELWDEF 8 Unmodified _VQELWDEF_ 0 0 0 REV__ENSG00000198883|ENST00000535214|PNMA5 REV__ENSG00000198883|ENST00000535214|PNMA5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2665405273438 2 533.248015 1064.48148 NaN NaN NaN NaN NaN NaN NaN 102.42 1 98.399 97.899 98.899 -4.0212 0 0 0 0.21486 1 19683 19683 8.5933 0 1 + 51845 19473 34445 34466 50732 50732 -0.0481852906466429 VQENARHYY 9 Unmodified _VQENARHYY_ 0 0 0 REV__nc|ENSG00000158882|Q969M1-2|TOMM40L REV__nc|ENSG00000158882|Q969M1-2|TOMM40L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2770385742188 2 590.280712 1178.54687 NaN NaN NaN NaN NaN NaN NaN 108.63 1 104.45 103.95 104.95 -4.1826 0 0 0 0.23508 1 20904 20904 7.2892 0 1 + 51846 17352 34446 34467 50733 50733 -0.03526114818964743 VQENARHYY 9 Unmodified _VQENARHYY_ 0 0 0 REV__nc|ENSG00000158882|Q969M1-2|TOMM40L REV__nc|ENSG00000158882|Q969M1-2|TOMM40L MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2640380859375 2 590.280712 1178.54687 NaN NaN NaN NaN NaN NaN NaN 108.75 1 104.56 104.06 105.06 -4.1826 0 0 0 0.23508 1 20928 20928 11.64 0.14559 1 + 51847 17352 34446 34467 50734 50734 -0.03526114818964743 VQEYRSKMY 9 Unmodified _VQEYRSKMY_ 0 0 0 REV__ENSG00000107625|ENST00000373585|DDX50 REV__ENSG00000107625|ENST00000373585|DDX50 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2841186523438 2 602.294973 1202.57539 NaN NaN NaN NaN NaN NaN NaN 143.77 1 138.71 138.21 139.21 -5.0614 0 0 0 0.23508 1 27720 27720 4.756 0 1 + 51848 15088 34447 34468 50735 50735 -0.017791332340266308 VQFIPLALYS 10 Unmodified _VQFIPLALYS_ 0 0 0 TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131 TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3322143554688 2 575.828975 1149.6434 0.38239 0.00022019 3.6325 0.0020917 4.0149 0.0023119 576.3312236041565 152.47 0.17429 147.29 147.23 147.41 -5.1759 5 4 2 0 0 0 0.90598 1 29562 29562 5.7319 0 1 1147500 51849 1519 34448 34469 50736 50736 0.07456059688274763 VQGEMRVP 8 Unmodified _VQGEMRVP_ 0 0 0 CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.T718Pfs*5|1|0.11|ENSG00000143702|chr1:243165808-243165808|T/-|frameshift_variant;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;CEP170|p.N481Ifs*26|1|0.13|ENSG00000143702|chr1:243185903-243185903|T/-|frameshift_variant;CEP170|p.N204Tfs*11|1|0.26|ENSG00000143702|chr1:243199080-243199080|T/-|frameshift_variant;CEP170|p.A226Qfs*31|1|0.08|ENSG00000143702|chr1:243191450-243191451|-/CATTG|frameshift_variant;ENST00000502249.6_1_4:119388789-119401509:+|nuORF CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.238525390625 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 71.626 1 67.999 67.499 68.499 -3.6275 0 0 0 0.21486 1 13511 13511 12.532 0.89125 1 51850 490 34449 34470 50737 50737 0.003732718485366604 VQGHAAFPE 9 Unmodified _VQGHAAFPE_ 0 0 0 ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;nc|ENSG00000172456|Q96C11-6|FGGY;ENST00000495718.5_1_1:59787394-60091722:+|nuORF;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;nc|ENSG00000172456|Q96C11-2|FGGY ENSG00000172456|ENST00000303721|FGGY ENSG00000172456|ENST00000303721|FGGY MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7361755371094 2 478.235242 954.45593 0.16214 7.7539E-05 0.0039058 1.8679E-06 0.16604 7.9407E-05 478.23526125131065 97.889 0.89758 93.62 93.089 93.987 -4.2692 42 25 2 0 0 0 0.37087 1 18684 18684 0.12781 0 1 3150800 51851 6222 34450 34471 50738 50738 -0.023119587964288257 VQGLSFHQ 8 Unmodified _VQGLSFHQ_ 0 0 0 ENSG00000186185|ENST00000593135|KIF18B;KIF18B|p.G393Efs*91|1|0.13|ENSG00000186185|chr17:44932733-44932733|C/-|frameshift_variant;KIF18B|p.C684Afs*66|1|0.21|ENSG00000186185|chr17:44928253-44928253|G/-|frameshift_variant;nc|ENSG00000186185|Q86Y91-6|KIF18B ENSG00000186185|ENST00000593135|KIF18B ENSG00000186185|ENST00000593135|KIF18B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23809814453125 2 458.237784 914.461016 0.13958 6.3962E-05 0.81717 0.00037446 0.95676 0.00043842 458.23800951520076 60.112 0.77853 56.888 56.533 57.312 -3.2237 45 21 3 0 0 0 0.69031 1 11251 11251 15.847 0 1 1506000 51852 7041 34451 34472 50739 50739 0.0003634506618936939 VQHQKLGDVK 10 Unmodified _VQHQKLGDVK_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;ENST00000566288.1_1_15:42040980-42042834:+|nuORF nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3314208984375 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 130.5 1 125.66 125.16 126.16 -4.8355 0 0 0 0.22588 1 25058 25058 6.7232 0 1 51853 6335 34452 34473 50740 50740 0.07655908145943613 VQIPVGIIII 10 Unmodified _VQIPVGIIII_ 0 0 0 ENSG00000163328|ENST00000392552|GPR155 ENSG00000163328|ENST00000392552|GPR155 ENSG00000163328|ENST00000392552|GPR155 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.28271484375 2 532.857535 1063.70052 0.24063 0.00012822 1.8962 0.0010104 2.1369 0.0011386 533.3599659289825 159.11 0.17578 154.31 154.19 154.37 -4.7952 6 4 2 0 0 0 0.91149 1 31624 31624 1.6526 0 1 1183800 51854 5415 34453 34474 50741 50741 0.17121526964660916 VQKFILILI 9 Unmodified _VQKFILILI_ 0 0 0 REV__ENSG00000009765|ENST00000344419|IYD REV__ENSG00000009765|ENST00000344419|IYD MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7860107421875 2 543.867903 1085.72125 NaN NaN NaN NaN NaN NaN NaN 173.18 1 168.39 167.89 168.89 -4.7898 0 0 0 0.19624 1 35314 35314 0 0 1 + 51855 13911 34454 34475 50742 50742 0.18182117344326798 VQKFLPSRI 9 Unmodified _VQKFLPSRI_ 0 0 0 ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.776123046875 2 544.334759 1086.65496 0.39299 0.00021392 2.3883 0.0013 2.7813 0.0015139 544.3360530782434 145.31 0.17645 140.37 140.27 140.45 -4.9445 6 4 2 0 0 0 0.77734 1 28103 28103 9.3831 5.4387 1 1809000 51856 11310 34455 34476 50743 50743 0.11510301502266884 VQKIPYLGF 9 Unmodified _VQKIPYLGF_ 0 0 0 UBASH3B|p.R603Q|1|0.4|ENSG00000154127|chr11:122808172-122808172|G/A|missense_variant UBASH3B|p.R603Q|1|0.4|ENSG00000154127|chr11:122808172-122808172|G/A|missense_variant UBASH3B|p.R603Q|1|0.4|ENSG00000154127|chr11:122808172-122808172|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2643432617188 2 532.810585 1063.60662 0.50514 0.00026914 1.1508 0.00061314 1.6559 0.00088228 532.8117264576082 145.61 0.20529 140.5 140.41 140.62 -5.1108 6 5 2 0 0 0 0.8204 1 28154 28154 0 0 1 1921700 51857 26542 34456 34477 50744 50744 0.07735807862354704 VQKIRYVWNYL 11 Unmodified _VQKIRYVWNYL_ 0 0 0 nc|ENSG00000127249|Q4VNC1-3|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;ENSG00000127249|ENST00000342695|ATP13A4 nc|ENSG00000127249|Q4VNC1-3|ATP13A4 nc|ENSG00000127249|Q4VNC1-3|ATP13A4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.4002075195312 2 741.416811 1480.81907 0.42823 0.0003175 0.34876 0.00025857 0.77699 0.00057607 741.9204219210126 169.35 0.16949 164.42 164.29 164.46 -4.9295 5 4 2 0 0 0 0.78434 1 33418 33418 5.7319 0.43497 1 14173000 51858 3468 34457 34478 50745 50745 0.09789274202398701 VQKPGPLQK 9 Unmodified _VQKPGPLQK_ 0 0 0 nc|ENSG00000117090|Q13291-3|SLAMF1;ENSG00000117090|ENST00000302035|SLAMF1 nc|ENSG00000117090|Q13291-3|SLAMF1 nc|ENSG00000117090|Q13291-3|SLAMF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 332.1967468261719 3 332.206315 993.597115 NaN NaN NaN NaN NaN NaN NaN 87.336 1 83.341 82.841 83.841 -3.9953 0 0 0 0.19657 1 16632 16632 4.897 0 1 51859 2973 34458 34479 50746 50746 0.1000603957684234 VQLALLRSF 9 Unmodified _VQLALLRSF_ 0 0 0 REV__ENST00000282488.11_1_3:151986042-151986192:+|nuORF REV__ENST00000282488.11_1_3:151986042-151986192:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7020874023438 2 523.821484 1045.62842 0.31178 0.00016332 4.4344 0.0023228 4.7461 0.0024861 523.8258829555525 140 0.35007 135.15 134.88 135.23 -4.8492 10 9 2 0 0 0 0.8319 1 26944 26944 1.8442 0 1 526400 + 51860 20313 34459 34480 50747 50747 0.1074261261094307 VQLALPRKVQ 10 Unmodified _VQLALPRKVQ_ 0 0 0 ENST00000527295.5_1_11:405898-406649:-|nuORF;ENSG00000185187|ENST00000431843|SIGIRR;nc|ENSG00000185187|Q6IA17-2|SIGIRR ENST00000527295.5_1_11:405898-406649:-|nuORF ENST00000527295.5_1_11:405898-406649:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3355102539062 2 576.36659 1150.71863 NaN NaN NaN NaN NaN NaN NaN 123.75 1 123.75 123.25 124.25 0 0 0 0 0.22588 1 24394 24394 3.2813 0.28607 1 51861 6968 34460 34481 50748 50748 0.14929661939368088 VQLMLHFRCN 10 Unmodified _VQLMLHFRCN_ 0 0 0 TAS1R2|p.W203C|1|0.13|ENSG00000179002|chr1:18854861-18854861|C/A|missense_variant TAS1R2|p.W203C|1|0.13|ENSG00000179002|chr1:18854861-18854861|C/A|missense_variant TAS1R2|p.W203C|1|0.13|ENSG00000179002|chr1:18854861-18854861|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7767944335938 2 630.820635 1259.62672 NaN NaN NaN NaN NaN NaN NaN 10.269 1 10.269 9.7686 10.769 0 0 0 0 0.22588 1 1272 1272 0 0 1 51862 25819 34461 34482 50749 50749 0.007289122590464103 VQLPDSNYNTL 11 Unmodified _VQLPDSNYNTL_ 0 0 0 nc|ENSG00000089639|Q9P107-2|GMIP;ENSG00000089639|ENST00000203556|GMIP nc|ENSG00000089639|Q9P107-2|GMIP nc|ENSG00000089639|Q9P107-2|GMIP MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 422.880126953125 3 421.878704 1262.61428 0.09326 3.9344E-05 0.36436 0.00015371 0.45762 0.00019306 421.8797589742962 161.36 0.72885 161.36 161.03 161.76 0 61 20 4 0 0 0 0.60781 1 32457 32457 5.4027 0 1 9504800 51863 1765 34462 34483 50750 50750 -0.006521293986679666 VQLQLFKLY 9 Unmodified _VQLQLFKLY_ 0 0 0 ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3255615234375 2 576.344792 1150.67503 NaN NaN NaN NaN NaN NaN NaN 139.72 1 135.08 134.58 135.58 -4.6439 0 0 0 0.23508 1 27584 27584 7.9102 1.7044 1 51864 1467 34463 34484 50751 50751 0.1057205244223951 VQLSVKHY 8 Unmodified _VQLSVKHY_ 0 0 0 REV__ENST00000456064.1_1_20:10594086-10594842:-|nuORF REV__ENST00000456064.1_1_20:10594086-10594842:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 487.27691650390625 2 487.276909 972.539266 NaN NaN NaN NaN NaN NaN NaN 163.75 1 158.96 158.46 159.46 -4.7898 0 0 0 0.21486 1 32666 32666 12.532 0 1 + 51865 19643 34464 34485 50752 50752 0.0518977765142381 VQLVPPVK 8 Unmodified _VQLVPPVK_ 0 0 0 REV__ENST00000505081.5_1_5:176938794-176940626:-|nuORF REV__ENST00000505081.5_1_5:176938794-176940626:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 440.2506103515625 2 440.286746 878.558939 NaN NaN NaN NaN NaN NaN NaN 36.63 1 36.63 36.13 37.13 0 0 0 0 0.21486 1 6759 6759 6.2058 0.44535 1 + 51866 18826 34465 34486 50753 50753 0.11480153662182602 VQLVWRPRQRR 11 Unmodified _VQLVWRPRQRR_ 0 0 0 REV__ENST00000378815.10_1_12:70132766-70149175:+|nuORF REV__ENST00000378815.10_1_12:70132766-70149175:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 747.4474487304688 2 747.449843 1492.88513 NaN NaN NaN NaN NaN NaN NaN 167.47 1 167.47 166.97 167.97 0 0 0 0 0.23698 1 34225 34225 2.7352 1.6637 1 + 51867 21126 34466 34487 50754 50754 0.1584052788775807 VQLYLHRQWLL 11 Unmodified _VQLYLHRQWLL_ 0 0 0 nc|ENSG00000187048|Q02928-2|CYP4A11;ENSG00000187048|ENST00000310638|CYP4A11 nc|ENSG00000187048|Q02928-2|CYP4A11 nc|ENSG00000187048|Q02928-2|CYP4A11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2654724121094 3 490.285628 1467.83505 NaN NaN NaN NaN NaN NaN NaN 73.267 1 69.729 69.229 70.229 -3.5385 0 0 0 0.22632 1 13905 13905 0.50596 0 1 51868 7091 34467 34488 50755 50755 0.11984980439274295 VQMGPRRLS 9 Unmodified _VQMGPRRLS_ 0 0 0 ENST00000532045.5_1_11:834538-836571:+|nuORF ENST00000532045.5_1_11:834538-836571:+|nuORF ENST00000532045.5_1_11:834538-836571:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2800903320312 2 522.292568 1042.57058 NaN NaN NaN NaN NaN NaN NaN 126.37 1 121.58 121.08 122.08 -4.7958 0 0 0 0.23508 1 24256 24256 7.2892 0.56607 1 51869 10976 34468 34489 50756 50756 0.05100027413868702 VQMHFATQ 8 Unmodified _VQMHFATQ_ 0 0 0 REV__nc|ENSG00000106328|Q9NQT6-2|FSCN3 REV__nc|ENSG00000106328|Q9NQT6-2|FSCN3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2313537597656 2 481.231645 960.448736 NaN NaN NaN NaN NaN NaN NaN 155.16 1 149.91 149.41 150.41 -5.2526 0 0 0 0.21486 1 30089 30089 5.2307 0 1 + 51870 15042 34469 34490 50757 50757 -0.03307014668519059 VQMMNWCMFA 10 Unmodified _VQMMNWCMFA_ 0 0 0 REV__ENSG00000183840|ENST00000329321|GPR39 REV__ENSG00000183840|ENST00000329321|GPR39 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7598876953125 2 630.755258 1259.49596 NaN NaN NaN NaN NaN NaN NaN 144.82 1 139.88 139.38 140.38 -4.9445 0 0 0 0.22588 1 27981 27981 3.9444 0.66309 1 + 51871 18870 34470 34491 50758 50758 -0.12340562775693797 VQMMNWCMFA 10 Unmodified _VQMMNWCMFA_ 0 0 0 REV__ENSG00000183840|ENST00000329321|GPR39 REV__ENSG00000183840|ENST00000329321|GPR39 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.752197265625 2 630.755258 1259.49596 NaN NaN NaN NaN NaN NaN NaN 144.84 1 139.89 139.39 140.39 -4.9445 0 0 0 0.22588 1 27985 27985 3.5965 0 1 + 51872 18870 34470 34491 50759 50759 -0.12340562775693797 VQNIRDAF 8 Unmodified _VQNIRDAF_ 0 0 0 REV__DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant REV__DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2536315917969 2 481.756341 961.498129 -0.077794 -3.7478E-05 -0.57356 -0.00027631 -0.65135 -0.00031379 481.75585471246455 71.011 0.11047 67.762 67.67 67.781 -3.2492 4 2 2 0 0 0 0.98792 1 13809 13809 9.3474 0 1 294630 + 51873 13731 34471 34492 50760 50760 0.015840166119346577 VQNTEKGP 8 Unmodified _VQNTEKGP_ 0 0 0 ENSG00000105063|ENST00000412770|PPP6R1 ENSG00000105063|ENST00000412770|PPP6R1 ENSG00000105063|ENST00000412770|PPP6R1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2204284667969 2 436.727249 871.439946 0.22047 9.6285E-05 0.12426 5.4266E-05 0.34473 0.00015055 436.72718726305646 26.815 0.30472 26.815 26.635 26.939 0 10 8 2 0 0 0 0.97966 1 4729 4729 16.942 1.0951 1 364580 51874 2277 34472 34493 50761 50761 -0.0009166503333517539 VQNVLLAPPD 10 Unmodified _VQNVLLAPPD_ 0 0 0 REV__COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant REV__COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.277099609375 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 88.122 1 84.372 83.872 84.872 -3.7501 0 0 0 0.21574 1 16865 16865 25.399 12.868 1 + 51875 13492 34473 34494 50762 50762 0.056900121317767116 VQPLGAGRSLP 11 Unmodified _VQPLGAGRSLP_ 0 0 0 REV__ENST00000560747.5_1_15:41625112-41625202:+|nuORF REV__ENST00000560747.5_1_15:41625112-41625202:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7667236328125 2 547.819473 1093.62439 NaN NaN NaN NaN NaN NaN NaN 163.33 1 158.54 158.04 159.04 -4.7898 0 0 0 0.22765 1 32552 32552 10.151 0.076642 1 + 51876 23044 34474 34495 50763 50763 0.0813252311722863 VQPLHFLTW 9 Unmodified _VQPLHFLTW_ 0 0 0 nc|ENSG00000158560|O14576-5|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1 nc|ENSG00000158560|O14576-5|DYNC1I1 nc|ENSG00000158560|O14576-5|DYNC1I1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2119140625 3 380.878198 1139.61277 -0.28986 -0.0001104 -0.56602 -0.00021558 -0.85587 -0.00032598 380.8780462734941 87.004 0.84106 83.277 82.872 83.713 -3.727 67 23 4 0 0 0 0.69394 1 16953 16953 6.6304 0.43853 1 8382800 51877 12399 34475 34496 50764 50764 0.04854326093891359 VQPLLKHIKK 10 Unmodified _VQPLLKHIKK_ 0 0 0 nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-13|TAF1;ENSG00000122728|ENST00000242310|TAF1L;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1;TAF1|p.L1451Cfs*4|1|0.04|ENSG00000147133|chrX:71408121-71408125|CTAAT/-|frameshift_variant;TAF1L|p.K665Rfs*4|2|0.06|ENSG00000122728|chr9:32633586-32633586|T/-|frameshift_variant;TAF1L|p.F1231Lfs*20|1|0.42|ENSG00000122728|chr9:32631887-32631887|A/-|frameshift_variant;TAF1L|p.E1124*|1|0.35|ENSG00000122728|chr9:32632210-32632211|-/A|frameshift_variant;TAF1L|p.F928Lfs*13|1|0.25|ENSG00000122728|chr9:32632796-32632796|A/-|frameshift_variant;TAF1L|p.A852Pfs*14|1|0.21|ENSG00000122728|chr9:32633027-32633027|T/-|frameshift_variant;TAF1L|p.F683Lfs*27|1|0.39|ENSG00000122728|chr9:32633531-32633531|A/-|frameshift_variant nc|ENSG00000147133|P21675-25|TAF1 nc|ENSG00000147133|P21675-25|TAF1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.28759765625 2 602.400433 1202.78631 NaN NaN NaN NaN NaN NaN NaN 134.01 1 129.37 128.87 129.87 -4.6399 0 0 0 0.22588 1 26422 26422 1.6526 0 1 51878 3240 34476 34497 50765 50765 0.19303111870158318 VQPNHLLFAL 10 Unmodified _VQPNHLLFAL_ 0 0 0 REV__ENSG00000148795|ENST00000369887|CYP17A1 REV__ENSG00000148795|ENST00000369887|CYP17A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3341064453125 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 168.96 1 164.03 163.53 164.53 -4.9295 0 0 0 0.22588 1 33337 33337 9.3831 0 1 + 51879 16988 34477 34498 50766 50766 0.08057997639662062 VQPNHLLFAL 10 Unmodified _VQPNHLLFAL_ 0 0 0 REV__ENSG00000148795|ENST00000369887|CYP17A1 REV__ENSG00000148795|ENST00000369887|CYP17A1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3335571289062 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 174.79 1 169.9 169.4 170.4 -4.8916 0 0 0 0.22588 1 34810 34810 5.7319 0 1 + 51880 16988 34477 34498 50767 50767 0.08057997639662062 VQPPALPA 8 Unmodified _VQPPALPA_ 0 0 0 sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1;sp|P16753|SCAF_HCMVACapsidscaffoldingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL80PE=1SV=1 sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1 sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 396.1399841308594 2 396.734346 791.454139 -0.43821 -0.00017385 -0.069286 -2.7488E-05 -0.5075 -0.00020134 396.73437445056373 112.07 0.80841 107.65 107.16 107.97 -4.4231 28 22 2 0 0 0 0.8689 1 22074 22074 3.5871 0.95582 1 1231800 51881 25752 34478 34499 50768 50768 0.05007032185596927 VQPPALPA 8 Unmodified _VQPPALPA_ 0 0 0 sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1;sp|P16753|SCAF_HCMVACapsidscaffoldingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL80PE=1SV=1 sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1 sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 396.734346 791.454139 0.12361 4.9042E-05 -0.84144 -0.00033383 -0.71783 -0.00028479 396.7341484241474 107.65 0.79828 107.65 107.17 107.97 0 -0.024556 -0.00041119 NaN 3.5871 28 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1298400 51882 25752 34478 34499 0.05007032185596927 VQPPALPA 8 Unmodified _VQPPALPA_ 0 0 0 sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1;sp|P16753|SCAF_HCMVACapsidscaffoldingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL80PE=1SV=1 sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1 sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 396.734346 791.454139 -0.039062 -1.5497E-05 -0.33067 -0.00013119 -0.36973 -0.00014668 396.7342736173743 112.29 0.80026 107.77 107.27 108.07 -4.5259 0.094594 -5.9016E-06 NaN 3.5871 33 22 2 NaN NaN NaN NaN 0 NaN NaN 0 973120 51883 25752 34478 34499 0.05007032185596927 VQPPALPA 8 Unmodified _VQPPALPA_ 0 0 0 sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1;sp|P16753|SCAF_HCMVACapsidscaffoldingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL80PE=1SV=1 sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1 sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 396.734346 791.454139 0.031997 1.2694E-05 -0.36322 -0.0001441 -0.33123 -0.00013141 396.73428746799095 111.85 1.1156 107.62 107.01 108.12 -4.2289 -0.049771 -3.1736E-05 NaN 3.5871 37 31 2 NaN NaN NaN NaN 0 NaN NaN 0 942000 51884 25752 34478 34499 0.05007032185596927 VQPQLLVKLLA 11 Unmodified _VQPQLLVKLLA_ 0 0 0 REV__FOCAD|p.D482Vfs*9|1|0.04|ENSG00000188352|chr9:20789597-20789598|-/TC|frameshift_variant REV__FOCAD|p.D482Vfs*9|1|0.04|ENSG00000188352|chr9:20789597-20789598|-/TC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 407.9359130859375 3 407.935825 1220.78564 NaN NaN NaN NaN NaN NaN NaN 9.1783 1 9.1783 8.6783 9.6783 0 0 0 0 0.23698 1 1034 1034 0 0 1 + 51885 19144 34479 34500 50769 50769 0.18408272430497163 VQPRREPTV 9 Unmodified _VQPRREPTV_ 0 0 0 REV__ENST00000598636.1_1_19:47730148-47730220:-|nuORF REV__ENST00000598636.1_1_19:47730148-47730220:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2594604492188 2 541.309272 1080.60399 0.45655 0.00024713 -2.045 -0.001107 -1.5885 -0.00085987 541.3073807833264 152.49 0.3165 147.32 147.09 147.41 -5.1759 10 8 2 0 0 0 0.62102 1 29556 29556 11.64 0.81637 1 1248600 + 51886 23396 34480 34501 50770 50770 0.06691352457414723 VQPSFFHKRFK 11 Unmodified _VQPSFFHKRFK_ 0 0 0 REV__ENST00000336184.6_1_1:211547904-211548087:+|nuORF REV__ENST00000336184.6_1_1:211547904-211548087:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 710.8934326171875 2 710.896046 1419.77754 NaN NaN NaN NaN NaN NaN NaN 167.72 1 167.72 167.22 168.22 0 0 0 0 0.23429 1 34292 34292 4.897 0.70751 1 + 51887 20663 34481 34502 50771 50771 0.08444138233676313 VQQAHVGLVP 10 Unmodified _VQQAHVGLVP_ 0 0 0 ENST00000511502.5_1_1:1563563-1565907:+|nuORF;ENST00000506488.5_1_1:1562112-1565907:+|nuORF;ENST00000479659.5_1_1:1561777-1565907:+|nuORF;MIB2|p.D840Tfs*22|1|0.39|ENSG00000197530|chr1:1628687-1628687|G/-|frameshift_variant;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2 ENST00000511502.5_1_1:1563563-1565907:+|nuORF ENST00000511502.5_1_1:1563563-1565907:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 350.1961975097656 3 349.869703 1046.58728 NaN NaN NaN NaN NaN NaN NaN 57.482 1 54.588 54.088 55.088 -2.8944 0 0 0 0.22588 1 11032 11032 1.9064 0 1 51888 7374 34482 34503 50772 50772 0.06584851571483341 VQQNKRLQQ 9 Unmodified _VQQNKRLQQ_ 0 0 0 REV__ENST00000492226.1_1_3:183861886-183862561:+|nuORF REV__ENST00000492226.1_1_3:183861886-183862561:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2138366699219 3 381.219395 1140.63635 NaN NaN NaN NaN NaN NaN NaN 29.798 1 29.798 29.298 30.298 0 0 0 0 0.19638 1 5339 5339 0.073264 0.073264 1 + 51889 22332 34483 34504 50773 50773 0.07166139860419207 VQQRYLSYRRV 11 Unmodified _VQQRYLSYRRV_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25531005859375 3 489.944153 1466.81063 -0.19685 -9.6447E-05 -0.079927 -3.916E-05 -0.27678 -0.00013561 490.2786177159552 19.621 0.16913 18.296 18.247 18.416 -1.3251 6 4 2 0 0 0 0.82353 1 3005 3005 0.50596 0 1 415000 51890 6508 34484 34505 50774 50774 0.09589720285703152 VQQVALDT 8 Unmodified _VQQVALDT_ 0 0 0 MAP3K19|p.K1089Q|1|0.15|ENSG00000176601|chr2:134981476-134981476|T/G|missense_variant MAP3K19|p.K1089Q|1|0.15|ENSG00000176601|chr2:134981476-134981476|T/G|missense_variant MAP3K19|p.K1089Q|1|0.15|ENSG00000176601|chr2:134981476-134981476|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22845458984375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 64.607 1 64.607 64.107 65.107 0 0 0 0 0.23749 1 12440 12440 0.12286 0 1 51891 12109 34485 34506 50775 50775 0.01901505626449307 VQQVALDT 8 Unmodified _VQQVALDT_ 0 0 0 MAP3K19|p.K1089Q|1|0.15|ENSG00000176601|chr2:134981476-134981476|T/G|missense_variant MAP3K19|p.K1089Q|1|0.15|ENSG00000176601|chr2:134981476-134981476|T/G|missense_variant MAP3K19|p.K1089Q|1|0.15|ENSG00000176601|chr2:134981476-134981476|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22857666015625 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 86.52 1 82.791 82.291 83.291 -3.7289 0 0 0 0.2343 1 16545 16545 0.62683 0 1 51892 12109 34485 34506 50776 50776 0.01901505626449307 VQRHGAQLRS 10 Unmodified _VQRHGAQLRS_ 0 0 0 REV__nc|ENSG00000183798|Q9NT22-2|EMILIN3 REV__nc|ENSG00000183798|Q9NT22-2|EMILIN3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3240966796875 2 576.323245 1150.63194 NaN NaN NaN NaN NaN NaN NaN 158.03 1 152.75 152.25 153.25 -5.2748 0 0 0 0.22588 1 30671 30671 10.8 0.72558 1 + 51893 18866 34486 34507 50777 50777 0.06264675437500955 VQRHLVRKN 9 Unmodified _VQRHLVRKN_ 0 0 0 SLC4A2|p.R285Q|1|0.5|ENSG00000164889|chr7:151066881-151066881|G/A|missense_variant SLC4A2|p.R285Q|1|0.5|ENSG00000164889|chr7:151066881-151066881|G/A|missense_variant SLC4A2|p.R285Q|1|0.5|ENSG00000164889|chr7:151066881-151066881|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 383.9028015136719 3 383.903629 1148.68906 NaN NaN NaN NaN NaN NaN NaN 9.0702 1 8.0355 7.5355 8.5355 -1.0347 0 0 0 0.23508 1 896 896 0.26902 0 1 51894 25689 34487 34508 50778 50778 0.12066142713888439 VQRKVFFRRHY 11 Unmodified _VQRKVFFRRHY_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 512.933349609375 3 512.628388 1534.86333 NaN NaN NaN NaN NaN NaN NaN 165.51 1 160.53 160.03 161.03 -4.9811 0 0 0 0.23698 1 32357 32357 1.2148 0.76031 1 51895 3691 34488 34509 50779 50779 0.11729723139205817 VQRKYAQMK 9 Unmodified _VQRKYAQMK_ 0 0 0 ENST00000505658.5_1_17:48828064-48828295:+|nuORF ENST00000505658.5_1_17:48828064-48828295:+|nuORF ENST00000505658.5_1_17:48828064-48828295:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3247680664062 2 576.321325 1150.6281 NaN NaN NaN NaN NaN NaN NaN 152.29 1 147.05 146.55 147.55 -5.2365 0 0 0 0.19652 1 29526 29526 0.20686 0.17757 1 51896 10675 34489 34510 50780 50780 0.05880869619409168 VQRLFYKKE 9 Unmodified _VQRLFYKKE_ 0 0 0 tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1 tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1 tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 403.79791259765625 3 404.236274 1209.68699 NaN NaN NaN NaN NaN NaN NaN 142.68 1 137.78 137.28 138.28 -4.8982 0 0 0 0.19638 1 27533 27533 0.0033805 0 1 51897 25980 34490 34511 50781 50781 0.09053669185414037 VQRLTYRRRLS 11 Unmodified _VQRLTYRRRLS_ 0 0 0 ENSG00000109475|ENST00000394667|RPL34;ENST00000503574.1_1_4:109543115-109543474:+|nuORF ENSG00000109475|ENST00000394667|RPL34 ENSG00000109475|ENST00000394667|RPL34 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.18756103515625 4 362.720567 1446.85316 0.82519 0.00029931 -0.68117 -0.00024708 0.14402 5.2239E-05 362.72036943303294 24.98 0.27534 23.331 23.235 23.511 -1.6482 12 7 2 0 0 0 0.88374 1 4368 4368 8.4443 5.372 1 441810 51898 2530 34491 34512 50782 50782 0.14761115413966763 VQRLTYRRRLS 11 Unmodified _VQRLTYRRRLS_ 0 0 0 ENSG00000109475|ENST00000394667|RPL34;ENST00000503574.1_1_4:109543115-109543474:+|nuORF ENSG00000109475|ENST00000394667|RPL34 ENSG00000109475|ENST00000394667|RPL34 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 4 362.720567 1446.85316 -0.21104 -7.6549E-05 0.40297 0.00014617 0.19193 6.9616E-05 362.7207714142471 22.934 0.27215 22.934 22.823 23.096 0 -0.25001 0.00037845 NaN 8.4443 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 612730 51899 2530 34491 34512 0.14761115413966763 VQRLTYRRRLS 11 Unmodified _VQRLTYRRRLS_ 0 0 0 ENSG00000109475|ENST00000394667|RPL34;ENST00000503574.1_1_4:109543115-109543474:+|nuORF ENSG00000109475|ENST00000394667|RPL34 ENSG00000109475|ENST00000394667|RPL34 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 362.720567 1446.85316 0.040704 1.4764E-05 0.32383 0.00011746 0.36453 0.00013222 362.97147495064763 24.796 0.34187 23.262 23.06 23.402 -1.5342 0.078274 0.00026362 NaN 8.4443 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 543800 51900 2530 34491 34512 0.14761115413966763 VQRLTYRRRLS 11 Unmodified _VQRLTYRRRLS_ 0 0 0 ENSG00000109475|ENST00000394667|RPL34;ENST00000503574.1_1_4:109543115-109543474:+|nuORF ENSG00000109475|ENST00000394667|RPL34 ENSG00000109475|ENST00000394667|RPL34 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 362.720567 1446.85316 -0.86257 -0.00031287 0.45593 0.00016538 -0.40663 -0.00014749 362.72101491897257 25.062 0.28008 23.208 23.084 23.364 -1.8534 0.024286 0.00045529 NaN 8.4443 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 511160 51901 2530 34491 34512 0.14761115413966763 VQRMRFSY 8 Unmodified _VQRMRFSY_ 0 0 0 REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7799072265625 2 543.779293 1085.54403 NaN NaN NaN NaN NaN NaN NaN 134.46 1 129.59 129.09 130.09 -4.8726 0 0 0 0.21486 1 25830 25830 9.3474 0.75416 1 + 51902 14238 34492 34513 50783 50783 0.004683385225234815 VQRPKGYRKL 10 Unmodified _VQRPKGYRKL_ 0 0 0 ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7646484375 2 622.882939 1243.75132 0.2912 0.00018138 0.62311 0.00038812 0.9143 0.0005695 622.8837620267585 135.41 0.10297 130.51 130.46 130.57 -4.8951 4 2 2 0 0 0 0.91149 1 26014 26014 3.2813 2.088 1 1116300 51903 6723 34493 34514 50784 50784 0.13919869062215184 VQRQVHQTR 9 Unmodified _VQRQVHQTR_ 0 0 0 REV__ENSG00000175513|ENST00000532620|TSGA10IP REV__ENSG00000175513|ENST00000532620|TSGA10IP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3230590820312 2 576.323245 1150.63194 NaN NaN NaN NaN NaN NaN NaN 7.6831 1 7.004 6.504 7.504 -0.67913 0 0 0 0.23508 1 723 723 0.52476 0 1 + 51904 18478 34494 34515 50785 50785 0.06264675437500955 VQRRIRRHKNY 11 Unmodified _VQRRIRRHKNY_ 0 0 0 ENSG00000159461|ENST00000290649|AMFR;ENST00000492830.5_1_16:56419897-56437006:-|nuORF ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 508.7814025878906 3 509.302675 1524.8862 -0.067722 -3.4491E-05 3.9719 0.0020229 3.9042 0.0019884 509.30527193915617 139 0.11086 134.36 134.27 134.38 -4.6439 4 2 2 0 0 0 0.96216 1 27436 27436 0.08335 0 1 372300 51905 5210 34495 34516 50786 50786 0.144747422566752 VQRRIRRP 8 Unmodified _VQRRIRRP_ 0 0 0 REV__ENST00000606367.1_1_6:31165433-31165721:-|nuORF REV__ENST00000606367.1_1_6:31165433-31165721:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2620849609375 2 540.84669 1079.67883 NaN NaN NaN NaN NaN NaN NaN 61.907 1 58.667 58.167 59.167 -3.2395 0 0 0 0.21486 1 11596 11596 4.756 0 1 + 51906 23458 34496 34517 50787 50787 0.1421757977930156 VQRYLHKPY 9 Unmodified _VQRYLHKPY_ 0 0 0 ENSG00000135912|ENST00000392102|TTLL4;ENST00000465558.5_1_2:219610891-219612857:+|nuORF ENSG00000135912|ENST00000392102|TTLL4 ENSG00000135912|ENST00000392102|TTLL4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2810668945312 2 602.33529 1202.65603 NaN NaN NaN NaN NaN NaN NaN 100.93 1 96.772 96.272 97.272 -4.1594 0 0 0 0.23508 1 19842 19842 7.9102 2.1783 1 51907 3963 34497 34518 50788 50788 0.06280515871208081 VQSDLTLW 8 Unmodified _VQSDLTLW_ 0 0 0 REV__ENSG00000130477|ENST00000519716|UNC13A REV__ENSG00000130477|ENST00000519716|UNC13A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2528381347656 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 86.93 1 83.201 82.701 83.701 -3.7289 0 0 0 0.19342 1 16628 16628 26.884 3.7352 1 + 51908 16007 34498 34519 50789 50789 0.00982078660570096 VQSEWRLY 8 Unmodified _VQSEWRLY_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;SVIL|p.R1887C|1|0.37|ENSG00000197321|chr10:29470460-29470460|G/A|missense_variant nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2777099609375 2 540.777274 1079.53999 0.72633 0.00039278 0.55166 0.00029832 1.278 0.00069111 540.7771481640634 109.88 1.4389 105.7 104.87 106.31 -4.1826 95 40 3 0 0 0 0.52597 1 21015 21015 26.884 1.4843 1 5333300 51909 7353 34499 34520 50790 50790 0.003405723004561878 VQSFAGLSDY 10 Unmodified _VQSFAGLSDY_ 0 0 0 REV__PKDREJ|p.H1268Qfs*19|1|0.09|ENSG00000130943|chr22:46259519-46259520|-/AAATC|frameshift_variant REV__PKDREJ|p.H1268Qfs*19|1|0.09|ENSG00000130943|chr22:46259519-46259520|-/AAATC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7906494140625 2 543.758746 1085.50294 0.15468 8.4107E-05 -0.052909 -2.877E-05 0.10177 5.5337E-05 543.7586835859865 96.962 0.78553 92.727 92.338 93.124 -4.2348 54 22 3 0 0 0 0.2133 1 18551 18551 4.6586 0 1 8210000 + 51910 16040 34500 34521 50791 50791 -0.03639144035946629 VQSQTQPVSL 10 Unmodified _VQSQTQPVSL_ 0 0 0 nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX nc|ENSG00000159840|Q15942-2|ZYX nc|ENSG00000159840|Q15942-2|ZYX MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7890014648438 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 147.03 1 142.35 141.85 142.85 -4.6868 0 0 0 2.8426 1 29169 29169 0.063865 0 1 51911 5218 34501 34522 50792 50792 0.032325202637593975 VQSWPKSP 8 Unmodified _VQSWPKSP_ 0 0 0 REV__ENSG00000047188|ENST00000161863|YTHDC2 REV__ENSG00000047188|ENST00000161863|YTHDC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2431335449219 2 464.747985 927.481417 -0.085525 -3.9748E-05 -0.33831 -0.00015723 -0.42383 -0.00019697 464.74784482513866 59.962 0.59159 57.029 56.749 57.341 -2.9333 27 16 2 0 0 0 1.0115 1 11485 11485 3.5965 0 1 1101700 + 51912 14058 34502 34523 50793 50793 0.014775157260032756 VQSWSQGQGRK 11 Unmodified _VQSWSQGQGRK_ 0 0 0 REV__ENST00000537488.1_1_12:7048306-7050940:+|nuORF REV__ENST00000537488.1_1_12:7048306-7050940:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.773193359375 2 630.825818 1259.63708 NaN NaN NaN NaN NaN NaN NaN 172.6 1 172.6 172.1 173.1 0 0 0 0 0.22264 1 35638 35638 2.732 1.8568 1 + 51913 22824 34503 34524 50794 50794 0.0176493450946964 VQTFKEKSV 9 Unmodified _VQTFKEKSV_ 0 0 0 REV__ENSG00000112297|ENST00000633556|CRYBG1 REV__ENSG00000112297|ENST00000633556|CRYBG1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2864379882812 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 137.97 1 137.97 137.47 138.47 0 0 0 0 0.23508 1 27378 27378 7.2892 0 1 + 51914 15292 34504 34525 50795 50795 0.05690012131753974 VQTGLPMCI 9 Unmodified _VQTGLPMCI_ 0 0 0 nc|ENSG00000167113|Q9Y3A0-2|COQ4;ENSG00000167113|ENST00000300452|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2456359863281 2 481.245906 960.477259 NaN NaN NaN NaN NaN NaN NaN 174.6 1 169.71 169.21 170.21 -4.8845 0 0 0 0.23508 1 34690 34690 5.2307 0 1 51915 5787 34505 34526 50796 50796 -0.004560330835829518 VQTHYPPSL 9 Unmodified _VQTHYPPSL_ 0 0 0 ENST00000305454.7_1_8:67428410-67428662:+|nuORF ENST00000305454.7_1_8:67428410-67428662:+|nuORF ENST00000305454.7_1_8:67428410-67428662:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.274169921875 2 521.271824 1040.5291 0.56079 0.00029232 -0.44268 -0.00023076 0.1181 6.1563E-05 521.2714942103793 47.529 0.80657 47.529 47.158 47.965 0 68 22 4 0 0 0 0.60061 1 8896 8896 13.042 0 1 19733000 51916 8603 34506 34527 50797 50797 0.010451699261693648 VQTLRSGWP 9 Unmodified _VQTLRSGWP_ 0 0 0 REV__ENST00000600466.1_1_19:50306521-50306755:+|nuORF REV__ENST00000600466.1_1_19:50306521-50306755:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2640380859375 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 151.25 1 151.25 150.75 151.75 0 0 0 0 0.19634 1 30289 30289 0.073264 0.069883 1 + 51917 23411 34507 34528 50798 50798 0.036402785373638835 VQTRQRNHCRW 11 Unmodified _VQTRQRNHCRW_ 0 0 0 ENST00000342992.10_3_2:179400845-179400926:-|nuORF ENST00000342992.10_3_2:179400845-179400926:-|nuORF ENST00000342992.10_3_2:179400845-179400926:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3817749023438 2 742.376017 1482.73748 NaN NaN NaN NaN NaN NaN NaN 164.35 1 159.3 158.8 159.8 -5.0446 0 0 0 0.22632 1 32045 32045 0.0059557 0 1 51918 8867 34508 34529 50799 50799 0.015422682914959296 VQTRVQAEL 9 Unmodified _VQTRVQAEL_ 0 0 0 ENSG00000138061|ENST00000610745|CYP1B1 ENSG00000138061|ENST00000610745|CYP1B1 ENSG00000138061|ENST00000610745|CYP1B1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.280029296875 2 522.29583 1042.57711 -0.76809 -0.00040117 0.83948 0.00043845 0.071385 3.7284E-05 522.2961562392844 107.77 0.41463 103.35 103.02 103.44 -4.4121 16 11 2 0 0 0 0.70212 1 20634 20634 21.537 0 1 1303100 51919 4143 34509 34530 50800 50800 0.057522438462456194 VQTTKLRKTG 10 Unmodified _VQTTKLRKTG_ 0 0 0 ENST00000424684.2_1_1:149284661-149284727:+|nuORF ENST00000424684.2_1_1:149284661-149284727:+|nuORF ENST00000424684.2_1_1:149284661-149284727:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.8993225097656 3 377.899662 1130.67716 NaN NaN NaN NaN NaN NaN NaN 8.3683 1 7.6892 7.1892 8.1892 -0.67913 0 0 0 0.22588 1 861 861 0 0 1 51920 9706 34510 34531 50801 50801 0.11704481180004223 VQVALSPP 8 Unmodified _VQVALSPP_ 0 0 0 REV__ENST00000588075.5_3_17:76993684-76993801:-|nuORF REV__ENST00000588075.5_3_17:76993684-76993801:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3735961914062 1 810.47198 809.464704 0.38485 0.00031191 0.12021 9.7423E-05 0.50506 0.00040934 810.4719568974236 104.59 0.58328 100.24 100.01 100.59 -4.346 24 16 2 0 0 0 0.15482 1 20026 20026 52.268 0 1 2061500 + 51921 23286 34511 34532 50802 50802 0.05235014840047825 VQVALSPP 8 Unmodified _VQVALSPP_ 0 0 0 REV__ENST00000588075.5_3_17:76993684-76993801:-|nuORF REV__ENST00000588075.5_3_17:76993684-76993801:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 810.47198 809.464704 0.2757 0.00022345 0.087775 7.1139E-05 0.36348 0.00029459 810.4721033330013 104.41 0.5488 100.19 99.96 100.51 -4.2183 -0.06296 0.00012454 NaN 52.268 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2702600 + 51922 23286 34511 34532 0.05235014840047825 VQVALSPP 8 Unmodified _VQVALSPP_ 0 0 0 REV__ENST00000588075.5_3_17:76993684-76993801:-|nuORF REV__ENST00000588075.5_3_17:76993684-76993801:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 810.47198 809.464704 0.38485 0.00031191 0.12021 9.7423E-05 0.50506 0.00040934 810.4719568974236 104.59 0.58328 100.24 100.01 100.59 -4.346 -0.0090972 0.00015083 NaN 52.268 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2061500 + 51923 23286 34511 34532 0.05235014840047825 VQVALSPP 8 Unmodified _VQVALSPP_ 0 0 0 REV__ENST00000588075.5_3_17:76993684-76993801:-|nuORF REV__ENST00000588075.5_3_17:76993684-76993801:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 810.47198 809.464704 0.90085 0.00073011 -0.31403 -0.00025451 0.58682 0.0004756 810.4715388504559 104.38 0.53006 100.32 100.05 100.58 -4.0543 0.072057 -0.00020111 NaN 52.268 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2253800 + 51924 23286 34511 34532 0.05235014840047825 VQVEREEEEG 10 Unmodified _VQVEREEEEG_ 0 0 0 REV__COL20A1|p.P1149Lfs*53|1|0.06|ENSG00000101203|chr20:63326135-63326135|C/-|frameshift_variant REV__COL20A1|p.P1149Lfs*53|1|0.06|ENSG00000101203|chr20:63326135-63326135|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.3006591796875 2 602.278032 1202.54151 NaN NaN NaN NaN NaN NaN NaN 163.31 1 158.24 157.74 158.74 -5.0648 0 0 0 0.22588 1 31771 31771 5.7319 1.203 1 + 51925 13480 34512 34533 50803 50803 -0.05165883192103138 VQVGRKRRRKR 11 Unmodified _VQVGRKRRRKR_ 0 0 0 TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 720.1384887695312 2 719.968734 1437.92291 NaN NaN NaN NaN NaN NaN NaN 167.95 1 167.95 167.45 168.45 0 0 0 0 0.23698 1 34355 34355 1.1933 0.84271 1 51926 26516 34513 34534 50804 50804 0.22147038873231395 VQVPLLLRAI 10 Unmodified _VQVPLLLRAI_ 0 0 0 ENSG00000132874|ENST00000255226|SLC14A2;nc|ENSG00000132874|Q15849-2|SLC14A2 ENSG00000132874|ENST00000255226|SLC14A2 ENSG00000132874|ENST00000255226|SLC14A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 561.374267578125 2 561.373884 1120.73321 NaN NaN NaN NaN NaN NaN NaN 173.69 1 168.9 168.4 169.4 -4.7898 0 0 0 0.22588 1 35448 35448 3.5965 0 1 51927 3769 34514 34535 50805 50805 0.1776773408751069 VQVSVWYY 8 Unmodified _VQVSVWYY_ 0 0 0 ENST00000604585.5_1_10:122611059-122615629:+|nuORF ENST00000604585.5_1_10:122611059-122615629:+|nuORF ENST00000604585.5_1_10:122611059-122615629:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2600708007812 2 522.263468 1042.51238 -0.58978 -0.00030802 -2.7102 -0.0014154 -3.3 -0.0017234 522.7660064322845 146.81 0.17229 141.7 141.58 141.75 -5.1108 5 4 2 0 0 0 0.69887 1 28410 28410 14.582 0 1 2173300 51928 11729 34515 34536 50806 50806 -0.0071733095976469485 VQVTKKKKKK 10 Unmodified _VQVTKKKKKK_ 0 0 0 EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant;ENSG00000129518|ENST00000250454|EAPP EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 608.044189453125 2 607.91899 1213.82343 1.1962 0.00072719 2.6485 0.0016101 3.8447 0.0023373 607.9210384141506 172.02 0.14337 167.23 167.12 167.26 -4.7898 5 3 2 0 0 0 0.91149 1 35008 35008 2.9952 0 1 4421600 51929 908 34516 34537 50807 50807 0.22506783415929021 VQVVEGEAPPG 11 Unmodified _VQVVEGEAPPG_ 0 0 0 REV__nc|ENSG00000066135|O75164-2|KDM4A REV__nc|ENSG00000066135|O75164-2|KDM4A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2800903320312 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 63.949 1 60.533 60.033 61.033 -3.4158 0 0 0 0.21513 1 11959 11959 15.248 3.0078 1 + 51930 14200 34517 34538 50808 50808 0.008088313724329055 VQVVFWRL 8 Unmodified _VQVVFWRL_ 0 0 0 ENST00000498313.5_1_11:2323379-2337620:+|nuORF;nc|ENSG00000064201|Q96QS1-3|TSPAN32;nc|ENSG00000064201|Q96QS1-5|TSPAN32;nc|ENSG00000064201|Q96QS1-2|TSPAN32;ENSG00000064201|ENST00000182290|TSPAN32;nc|ENSG00000064201|Q96QS1-4|TSPAN32;ENST00000461200.5_1_11:2323274-2335767:+|nuORF ENST00000498313.5_1_11:2323379-2337620:+|nuORF ENST00000498313.5_1_11:2323379-2337620:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6923217773438 2 523.810919 1045.60729 NaN NaN NaN NaN NaN NaN NaN 116.75 1 112.26 111.76 112.76 -4.486 0 0 0 0.20896 1 23017 23017 18.135 4.6271 1 51931 1331 34518 34539 50809 50809 0.08630647302061334 VQWPPREL 8 Unmodified _VQWPPREL_ 0 0 0 ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 342.19146728515625 3 342.190665 1023.55016 NaN NaN NaN NaN NaN NaN NaN 122.44 1 122.44 121.94 122.94 0 0 0 0 0.21486 1 24136 24136 1.6526 0 1 51932 2920 34519 34540 50810 50810 0.03933180025705951 VQYKIYGQRQW 11 Unmodified _VQYKIYGQRQW_ 0 0 0 nc|ENSG00000164485|Q969J5-2|IL22RA2;nc|ENSG00000164485|Q969J5-3|IL22RA2 nc|ENSG00000164485|Q969J5-2|IL22RA2 nc|ENSG00000164485|Q969J5-2|IL22RA2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2649230957031 3 490.261371 1467.76228 NaN NaN NaN NaN NaN NaN NaN 78.532 1 78.532 78.032 79.032 0 0 0 0 0.22632 1 15284 15284 0.0059557 0 1 51933 12424 34520 34541 50811 50811 0.0471122664584982 VQYLQDAYS 9 Unmodified _VQYLQDAYS_ 0 0 0 NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant;ENSG00000010292|ENST00000315579|NCAPD2;ENST00000538600.1_1_12:6631091-6632090:+|nuORF NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7720336914062 2 543.758746 1085.50294 0.042314 2.3008E-05 -1.4171 -0.00077057 -1.3748 -0.00074756 543.7578141454372 81.497 0.31113 77.658 77.474 77.785 -3.8392 11 8 2 0 0 0 0.19311 1 15470 15470 37.974 1.847 1 505540 51934 1061 34521 34542 50812 50812 -0.03639144035969366 VQYVLYVRL 9 Unmodified _VQYVLYVRL_ 0 0 0 DAGLA|p.M94V|1|0.1|ENSG00000134780|chr11:61720863-61720863|A/G|missense_variant DAGLA|p.M94V|1|0.1|ENSG00000134780|chr11:61720863-61720863|A/G|missense_variant DAGLA|p.M94V|1|0.1|ENSG00000134780|chr11:61720863-61720863|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3392944335938 2 576.842416 1151.67028 -0.024268 -1.3999E-05 -0.97494 -0.00056239 -0.99921 -0.00057639 576.841643685122 64.541 0.51561 64.541 64.306 64.821 0 17 14 2 0 0 0 0.8319 1 12386 12386 7.9102 0 1 2532400 51935 779 34522 34543 50813 50813 0.10051168299469282 VQYWHTLP 8 Unmodified _VQYWHTLP_ 0 0 0 REV__CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant REV__CARM1|p.I452Sfs*12|1|0.18|ENSG00000142453|chr19:10920679-10920683|TTGTG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2666015625 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 17.534 1 16.223 15.723 16.723 -1.3109 0 0 0 0.23782 1 2813 2813 0.12286 0 1 + 51936 13261 34523 34544 50814 50814 0.004054911343700951 VRAIRKLLLY 10 Unmodified _VRAIRKLLLY_ 0 0 0 REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.75927734375 2 622.913707 1243.81286 NaN NaN NaN NaN NaN NaN NaN 74.098 1 74.098 73.598 74.598 0 0 0 0 2.8426 1 14382 14382 0.043787 0 1 + 51937 13762 34524 34545 50815 50815 0.2007080076150487 VRAIRKLLLY 10 Unmodified _VRAIRKLLLY_ 0 0 0 REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.770751953125 2 622.913707 1243.81286 NaN NaN NaN NaN NaN NaN NaN 125.17 1 120.52 120.02 121.02 -4.6495 0 0 0 2.8426 1 24081 24081 0.043787 0 1 + 51938 13762 34524 34545 50816 50816 0.2007080076150487 VRALPLLK 8 Unmodified _VRALPLLK_ 0 0 0 ENSG00000126950|ENST00000372930|TMEM35A ENSG00000126950|ENST00000372930|TMEM35A ENSG00000126950|ENST00000372930|TMEM35A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 303.5338439941406 3 303.879651 908.617122 NaN NaN NaN NaN NaN NaN NaN 14.642 1 14.642 14.142 15.142 0 0 0 0 0.2396 1 2193 2193 0 0 1 51939 3457 34525 34546 50817 50817 0.15915835307475845 VRALPLLK 8 Unmodified _VRALPLLK_ 0 0 0 ENSG00000126950|ENST00000372930|TMEM35A ENSG00000126950|ENST00000372930|TMEM35A ENSG00000126950|ENST00000372930|TMEM35A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.021484375 3 303.879651 908.617122 NaN NaN NaN NaN NaN NaN NaN 17.313 1 17.313 16.813 17.813 0 0 0 0 0.21486 1 2736 2736 0 0 1 51940 3457 34525 34546 50818 50818 0.15915835307475845 VRAPAKAAAA 10 Unmodified _VRAPAKAAAA_ 0 0 0 REV__ENST00000415947.1_1_2:205410595-205550919:+|nuORF REV__ENST00000415947.1_1_2:205410595-205550919:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 309.1900939941406 3 309.190776 924.550499 NaN NaN NaN NaN NaN NaN NaN 97.575 1 93.655 93.155 94.155 -3.9194 0 0 0 0.22588 1 18725 18725 0 0 1 + 51941 21460 34526 34547 50819 50819 0.08520599745543223 VRATLIVAK 9 Unmodified _VRATLIVAK_ 0 0 0 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.473876953125 3 324.218443 969.633501 NaN NaN NaN NaN NaN NaN NaN 81.453 1 81.453 80.953 81.953 0 0 0 0 0.1963 1 15863 15863 0.12781 0 1 + 51942 16906 34527 34548 50820 50820 0.14746916473563942 VRAVVIYG 8 Unmodified _VRAVVIYG_ 0 0 0 DDX4|p.G402V|1|0.29|ENSG00000152670|chr5:55790608-55790608|G/T|missense_variant;nc|ENSG00000152670|Q9NQI0-3|DDX4;DDX4|p.I565Yfs*35|1|0.1|ENSG00000152670|chr5:55813745-55813745|A/-|frameshift_variant;nc|ENSG00000152670|Q9NQI0-2|DDX4;nc|ENSG00000152670|Q9NQI0-4|DDX4;ENSG00000152670|ENST00000505374|DDX4 DDX4|p.G402V|1|0.29|ENSG00000152670|chr5:55790608-55790608|G/T|missense_variant DDX4|p.G402V|1|0.29|ENSG00000152670|chr5:55790608-55790608|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 438.76837158203125 2 438.76872 875.522887 NaN NaN NaN NaN NaN NaN NaN 12.538 1 11.528 11.028 12.028 -1.0098 0 0 0 0.2396 1 1749 1749 0.12286 0.12286 1 51943 801 34528 34549 50821 50821 0.0801469648533839 VRCIIHLH 8 Unmodified _VRCIIHLH_ 0 0 0 nc|ENSG00000075340|P35612-4|ADD2;nc|ENSG00000075340|P35612-2|ADD2;nc|ENSG00000075340|P35612-8|ADD2;nc|ENSG00000075340|P35612-9|ADD2;nc|ENSG00000075340|P35612-3|ADD2;ENSG00000075340|ENST00000264436|ADD2 nc|ENSG00000075340|P35612-4|ADD2 nc|ENSG00000075340|P35612-4|ADD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 495.7868347167969 2 495.786921 989.55929 NaN NaN NaN NaN NaN NaN NaN 7.0644 1 6.0198 5.5198 6.5198 -1.0446 0 0 0 0.21486 1 570 570 0 0 1 51944 12234 34529 34550 50822 50822 0.06409250110380071 VRCLCLDP 8 Unmodified _VRCLCLDP_ 0 0 0 REV__FBXO39|p.A172Pfs*3|1|0.13|ENSG00000177294|chr17:6780375-6780375|A/-|frameshift_variant REV__FBXO39|p.A172Pfs*3|1|0.13|ENSG00000177294|chr17:6780375-6780375|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2317199707031 2 459.730423 917.446293 0.17961 8.2571E-05 -0.87521 -0.00040236 -0.6956 -0.00031979 459.7300044652968 31.679 0.59852 29.448 29.2 29.798 -2.2305 27 16 2 0 0 0 0.64227 1 5811 5811 19.439 0 1 994280 + 51945 18551 34530 34551 50823 50823 -0.01573186397831705 VRDELESL 8 Unmodified _VRDELESL_ 0 0 0 REV__nc|ENSG00000115648|Q9BV36-5|MLPH REV__nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.25421142578125 2 480.753464 959.492375 0.63763 0.00030654 -1.5393 -0.00074004 -0.90171 -0.0004335 480.75281917941214 107.8 0.38682 103.67 103.46 103.84 -4.135 13 10 2 0 0 0 0.36038 1 20717 20717 34.102 0 1 403820 + 51946 15444 34531 34552 50824 50824 0.011008733096218748 VRDLDERY 8 Unmodified _VRDLDERY_ 0 0 0 REV__ENST00000338086.9_1_2:20512115-20518378:-|nuORF REV__ENST00000338086.9_1_2:20512115-20518378:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2704467773438 2 533.269813 1064.52507 0.018527 9.8801E-06 0.42859 0.00022855 0.44712 0.00023843 533.2701240843016 16.561 0.79352 16.561 16.058 16.851 0 48 22 4 0 0 0 0.2118 1 2575 2575 44.407 14.182 1 12631000 + 51947 20680 34532 34553 50825 50825 -0.004609195675357114 VRDPFVRLISA 11 Unmodified _VRDPFVRLISA_ 0 0 0 ENSG00000136213|ENST00000618655|CHST12 ENSG00000136213|ENST00000618655|CHST12 ENSG00000136213|ENST00000618655|CHST12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2384033203125 3 424.918945 1271.73501 -0.45056 -0.00019145 0.58224 0.0002474 0.13168 5.5951E-05 424.9191900865207 81.469 0.83269 77.781 77.456 78.289 -3.6879 37 23 2 0 0 0 0.96104 1 15482 15482 4.4062 0 1 1520100 51948 3991 34533 34554 50826 50826 0.1100074310547825 VRDVVIQHL 9 Unmodified _VRDVVIQHL_ 0 0 0 REV__ENSG00000010319|ENST00000231721|SEMA3G REV__ENSG00000010319|ENST00000231721|SEMA3G MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.21673583984375 3 360.217102 1077.62948 NaN NaN NaN NaN NaN NaN NaN 155.12 1 149.84 149.34 150.34 -5.2854 0 0 0 0.23508 1 30087 30087 1.0715 0 1 + 51949 13921 34534 34555 50827 50827 0.09376826979860198 VREHIRFS 8 Unmodified _VREHIRFS_ 0 0 0 REV__ENSG00000242852|ENST00000397732|ZNF709 REV__ENSG00000242852|ENST00000397732|ZNF709 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2688598632812 2 522.290882 1042.56721 NaN NaN NaN NaN NaN NaN NaN 153.83 1 153.83 153.33 154.33 0 0 0 0 0.21486 1 30827 30827 7.9102 0 1 + 51950 19796 34535 34556 50828 50828 0.04763100631521411 VRELLLRLRL 10 Unmodified _VRELLLRLRL_ 0 0 0 REV__ENST00000349457.7_1_16:57609483-57609783:+|nuORF REV__ENST00000349457.7_1_16:57609483-57609783:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 640.6282958984375 2 640.929889 1279.84522 0.42904 0.00027499 3.8579 0.0024726 4.2869 0.0027476 641.4332863343355 172.97 0.10175 168.07 168.02 168.12 -4.8977 4 2 2 0 0 0 1.1335 1 34325 34325 0.0013812 0 1 2066900 + 51951 20763 34536 34557 50829 50829 0.21649588164518718 VREPDHLQRV 10 Unmodified _VREPDHLQRV_ 0 0 0 nc|ENSG00000175164|P16442|ABO;ENSG00000175164|ENST00000538324|ABO nc|ENSG00000175164|P16442|ABO nc|ENSG00000175164|P16442|ABO MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.1751708984375 4 312.925643 1247.67347 0.10448 3.2694E-05 -0.79782 -0.00024966 -0.69334 -0.00021696 313.17562081094763 25.791 0.16808 24.156 24.029 24.197 -1.6347 6 4 2 0 0 0 0.46445 1 4250 4250 0.69767 0.49034 1 164610 51952 6389 34537 34558 50830 50830 0.05953811406175191 VRFFVLRV 8 Unmodified _VRFFVLRV_ 0 0 0 ENST00000238682.7_1_14:76447398-76447515:-|nuORF ENST00000238682.7_1_14:76447398-76447515:-|nuORF ENST00000238682.7_1_14:76447398-76447515:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 345.8868713378906 3 345.886917 1034.63892 NaN NaN NaN NaN NaN NaN NaN 7.6834 1 6.6686 6.1686 7.1686 -1.0148 0 0 0 0.21486 1 648 648 0 0 1 51953 8174 34538 34559 50831 50831 0.12298640056042132 VRFLFGLVN 9 Unmodified _VRFLFGLVN_ 0 0 0 nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF;NLRP3|p.S735Ffs*11|1|0.08|ENSG00000162711|chr1:247429627-247429628|-/T|frameshift_variant;nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3 nc|ENSG00000162711|Q96P20-3|NLRP3 nc|ENSG00000162711|Q96P20-3|NLRP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2720336914062 2 532.816202 1063.61785 NaN NaN NaN NaN NaN NaN NaN 174.17 1 169.28 168.78 169.78 -4.8845 0 0 0 0.19636 1 34598 34598 2.4985 2.3756 1 51954 5356 34539 34560 50832 50832 0.08858629956534969 VRFLVVSED 9 Unmodified _VRFLVVSED_ 0 0 0 NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant;ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1 NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2694091796875 2 532.292756 1062.57096 0.49968 0.00026598 -1.0052 -0.00053506 -0.50552 -0.00026908 532.2923409142331 101.09 0.66875 101.09 100.73 101.4 0 49 18 3 0 0 0 0.19983 1 19880 19880 1.6919 0 1 6068200 51955 7146 34540 34561 50833 50833 0.0421772561473972 VRFRARARTQ 10 Unmodified _VRFRARARTQ_ 0 0 0 REV__ENST00000428449.5_1_7:121945553-121945685:+|nuORF REV__ENST00000428449.5_1_7:121945553-121945685:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.76611328125 2 630.873437 1259.73232 NaN NaN NaN NaN NaN NaN NaN 74.355 1 70.991 70.491 71.491 -3.3643 0 0 0 2.8426 1 14504 14504 0.013265 0 1 + 51956 21591 34541 34562 50834 50834 0.11284332491163696 VRFRARARTQ 10 Unmodified _VRFRARARTQ_ 0 0 0 REV__ENST00000428449.5_1_7:121945553-121945685:+|nuORF REV__ENST00000428449.5_1_7:121945553-121945685:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.765380859375 2 630.873437 1259.73232 NaN NaN NaN NaN NaN NaN NaN 75.436 1 71.803 71.303 72.303 -3.6337 0 0 0 2.8426 1 14339 14339 0.0013812 0 1 + 51957 21591 34541 34562 50835 50835 0.11284332491163696 VRFRFLRAS 9 Unmodified _VRFRFLRAS_ 0 0 0 REV__ENSG00000129925|ENST00000431232|PGAP6 REV__ENSG00000129925|ENST00000431232|PGAP6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3306884765625 2 576.343449 1150.67235 0.34556 0.00019916 2.4139 0.0013912 2.7595 0.0015904 576.3446773763039 148.39 0.31573 143.33 143.19 143.5 -5.0595 12 8 2 0 0 0 0.2213 2 28725 28725;28745 0.40827 0.06395 1 1160100 + 51958 15975 34542 34563 50836;50837 50836 0.1030364182795438 VRFRLIQLSK 10 Unmodified _VRFRLIQLSK_ 0 0 0 REV__ENST00000375946.8_1_10:27443914-27444118:+|nuORF REV__ENST00000375946.8_1_10:27443914-27444118:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7581176757812 2 630.400964 1258.78738 0.40576 0.00025579 3.4007 0.0021438 3.8065 0.0023996 630.9057499755713 144.77 0.105 144.77 144.72 144.82 0 4 2 2 0 0 0 1.1309 1 28930 28930 0.043787 0 1 3692200 + 51959 21071 34543 34564 50838 50838 0.1683332623908882 VRFSETQI 8 Unmodified _VRFSETQI_ 0 0 0 ENST00000557684.5_1_12:25267803-25348012:-|nuORF;nc|ENSG00000118307|Q6TDU7-4|DNAI7;nc|ENSG00000118307|Q6TDU7-2|DNAI7;nc|ENSG00000118307|Q6TDU7-3|DNAI7;nc|ENSG00000118307|Q6TDU7|DNAI7;ENSG00000118307|ENST00000395987|DNAI7 ENST00000557684.5_1_12:25267803-25348012:-|nuORF ENST00000557684.5_1_12:25267803-25348012:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2646179199219 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 176.22 1 171.43 170.93 171.93 -4.7898 0 0 0 0.23538 1 36031 36031 0.12286 0 1 51960 3027 34544 34565 50839 50839 0.023328834091557837 VRFSETQI 8 Unmodified _VRFSETQI_ 0 0 0 ENST00000557684.5_1_12:25267803-25348012:-|nuORF;nc|ENSG00000118307|Q6TDU7-4|DNAI7;nc|ENSG00000118307|Q6TDU7-2|DNAI7;nc|ENSG00000118307|Q6TDU7-3|DNAI7;nc|ENSG00000118307|Q6TDU7|DNAI7;ENSG00000118307|ENST00000395987|DNAI7 ENST00000557684.5_1_12:25267803-25348012:-|nuORF ENST00000557684.5_1_12:25267803-25348012:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2643737792969 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 173.78 1 168.9 168.4 169.4 -4.8835 0 0 0 0.23107 1 34563 34563 0.12286 0 1 51961 3027 34544 34565 50840 50840 0.023328834091557837 VRFVKKRCHAA 11 Unmodified _VRFVKKRCHAA_ 0 0 0 REV__ENST00000595585.1_1_19:51452094-51455913:-|nuORF REV__ENST00000595585.1_1_19:51452094-51455913:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 438.8768615722656 3 438.924036 1313.75028 NaN NaN NaN NaN NaN NaN NaN 4.0138 1 3.3875 2.8875 3.8875 -0.62626 0 0 0 0.23698 1 3 3 0 0 1 + 51962 17966 34545 34566 50841 50841 0.10595331421700394 VRFWITERQSF 11 Unmodified _VRFWITERQSF_ 0 0 0 ENST00000461438.5_1_10:120917240-120925159:-|nuORF;nc|ENSG00000183605|Q6P4A7-2|SFXN4;ENSG00000183605|ENST00000355697|SFXN4 ENST00000461438.5_1_10:120917240-120925159:-|nuORF ENST00000461438.5_1_10:120917240-120925159:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26202392578125 3 490.261371 1467.76228 NaN NaN NaN NaN NaN NaN NaN 128.31 1 123.49 122.99 123.99 -4.817 0 0 0 0.22632 1 24632 24632 1.4551 0 1 51963 6855 34546 34567 50842 50842 0.0471122664584982 VRGGGAGG 8 Unmodified _VRGGGAGG_ 0 0 0 REV__ENST00000556302.5_1_14:24838518-24843333:+|nuORF REV__ENST00000556302.5_1_14:24838518-24843333:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.764404296875 1 630.331799 629.324522 1.2158 0.00076635 1.7229 0.001086 2.9387 0.0018523 630.3336536855799 175.42 0.21703 170.63 170.5 170.72 -4.7898 8 5 2 0 0 0 0.9003 1 35848 35848 0 0 1 10912000 + 51964 22993 34547 34568 50843 50843 -0.004967243736587079 VRGGGAGG 8 Unmodified _VRGGGAGG_ 0 0 0 REV__ENST00000556302.5_1_14:24838518-24843333:+|nuORF REV__ENST00000556302.5_1_14:24838518-24843333:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7591552734375 1 630.331799 629.324522 0.75854 0.00047813 2.5149 0.0015852 3.2734 0.0020633 630.3340428509533 175.47 0.13934 170.58 170.53 170.66 -4.8916 5 3 2 0 0 0 8448 1 34974 34974 0 0 1 5538700 + 51965 22993 34547 34568 50844 50844 -0.004967243736587079 VRGMDLQP 8 Unmodified _VRGMDLQP_ 0 0 0 ENSG00000130764|ENST00000378251|LRRC47 ENSG00000130764|ENST00000378251|LRRC47 ENSG00000130764|ENST00000378251|LRRC47 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2391357421875 2 458.23947 914.464386 NaN NaN NaN NaN NaN NaN NaN 80.44 1 76.753 76.253 77.253 -3.6879 0 0 0 0.19753 1 15337 15337 25.399 0 1 51966 3634 34548 34569 50845 50845 0.003732718485366604 VRGPPLLRGPC 11 Unmodified _VRGPPLLRGPC_ 0 0 0 ENST00000366607.4_1_1:235292035-235292101:-|nuORF ENST00000366607.4_1_1:235292035-235292101:-|nuORF ENST00000366607.4_1_1:235292035-235292101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 388.89373779296875 3 388.893854 1163.65973 NaN NaN NaN NaN NaN NaN NaN 9.9917 1 9.1975 8.6975 9.6975 -0.79424 0 0 0 0.23698 1 1206 1206 0 0 1 51967 9048 34549 34570 50846 50846 0.08444862373426076 VRGQVGVSGP 10 Unmodified _VRGQVGVSGP_ 0 0 0 ENST00000484442.5_1_X:110339628-110339947:+|nuORF ENST00000484442.5_1_X:110339628-110339947:+|nuORF ENST00000484442.5_1_X:110339628-110339947:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7328796386719 2 478.269616 954.524678 0.050813 2.4302E-05 0.21148 0.00010114 0.26229 0.00012545 478.26960292077626 41.49 0.66159 39.001 38.743 39.405 -2.4896 32 18 3 0 0 0 0.5575 1 7493 7493 21.537 4.4241 1 1218900 51968 10431 34550 34571 50847 50847 0.04559705503288569 VRGRFNLVY 9 Unmodified _VRGRFNLVY_ 0 0 0 REV__ENSG00000078246|ENST00000448120|TULP3 REV__ENSG00000078246|ENST00000448120|TULP3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21185302734375 3 375.217214 1122.62981 -1.9941 -0.00074824 1.8285 0.00068607 -0.16568 -6.2164E-05 375.2178918191765 17.461 0.16976 15.946 15.84 16.01 -1.5148 6 4 2 0 0 0 0.87918 1 2526 2526 5.2969 0.39987 1 109620 + 51969 14376 34551 34572 50848 50848 0.07340246699709496 VRHAIVLV 8 Unmodified _VRHAIVLV_ 0 0 0 REV__ENSG00000121270|ENST00000356608|ABCC11 REV__ENSG00000121270|ENST00000356608|ABCC11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7684326171875 2 453.797812 905.581071 NaN NaN NaN NaN NaN NaN NaN 24.11 1 24.11 23.61 24.61 0 0 0 0 0.21486 1 4140 4140 5.7604 0 1 + 51970 15648 34552 34573 50849 50849 0.12450378130608897 VRHGRDKGLI 10 Unmodified _VRHGRDKGLI_ 0 0 0 nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;ENSG00000138640|ENST00000264344|FAM13A nc|ENSG00000138640|O94988-6|FAM13A nc|ENSG00000138640|O94988-6|FAM13A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3321533203125 2 575.843813 1149.67307 0.3987 0.00022959 -1.1065 -0.00063718 -0.70781 -0.00040759 575.8430280591883 154.83 2.5682 149.58 147.54 150.11 -5.2527 156 72 3 0 0 0 0.75868 1 29931 29931 2.9952 0 1 6641300 51971 4190 34553 34574 50850 50850 0.10422436476983421 VRHKNTVV 8 Unmodified _VRHKNTVV_ 0 0 0 REV__ENSG00000166033|ENST00000368984|HTRA1 REV__ENSG00000166033|ENST00000368984|HTRA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 318.154541015625 3 318.194409 951.561398 NaN NaN NaN NaN NaN NaN NaN 121.23 1 116.54 116.04 117.04 -4.6873 0 0 0 0.21486 1 23270 23270 1.6526 0 1 + 51972 17819 34554 34575 50851 50851 0.08368002119857465 VRILKLKKKV 10 Unmodified _VRILKLKKKV_ 0 0 0 REV__SLC24A2|p.S266Kfs*33|1|0.28|ENSG00000155886|chr9:19786070-19786071|-/T|frameshift_variant REV__SLC24A2|p.S266Kfs*33|1|0.28|ENSG00000155886|chr9:19786070-19786071|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 612.6803588867188 2 612.94755 1223.88055 NaN NaN NaN NaN NaN NaN NaN 175.44 1 170.56 170.06 171.06 -4.8845 0 0 0 2.8426 1 34889 34889 0 0 1 + 51973 17231 34555 34576 50852 50852 0.2775625069227772 VRIMEQVLDLG 11 Unmodified _VRIMEQVLDLG_ 0 0 0 REV__nc|ENSG00000175198|P05165-3|PCCA REV__nc|ENSG00000175198|P05165-3|PCCA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2386779785156 3 424.904196 1271.69076 -0.024866 -1.0566E-05 -0.24622 -0.00010462 -0.27109 -0.00011519 425.23844272267286 81.148 0.91425 77.309 76.835 77.749 -3.8392 57 25 3 0 0 0 0.77537 1 15458 15458 6.6235 0.31837 1 3910400 + 51974 18461 34556 34577 50853 50853 0.06577970896955776 VRIPRPPP 8 Unmodified _VRIPRPPP_ 0 0 0 REV__ENSG00000175229|ENST00000312006|GAL3ST3 REV__ENSG00000175229|ENST00000312006|GAL3ST3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 466.29559326171875 2 466.295436 930.57632 NaN NaN NaN NaN NaN NaN NaN 132.48 1 127.84 127.34 128.34 -4.6399 0 0 0 0.22934 1 26116 26116 0.62683 0 1 + 51975 18464 34557 34578 50854 50854 0.10825493987840673 VRIPSHPR 8 Unmodified _VRIPSHPR_ 0 0 0 ENST00000539683.2_1_16:31129164-31131922:+|nuORF ENST00000539683.2_1_16:31129164-31131922:+|nuORF ENST00000539683.2_1_16:31129164-31131922:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 321.4956359863281 3 321.194521 960.561733 -0.52275 -0.0001679 0.56138 0.00018031 0.038631 1.2408E-05 321.1947657329014 18.685 0.24016 18.685 18.582 18.822 0 11 6 2 0 0 0 0.89926 1 3047 3047 1.3295 0 1 678630 51976 11060 34558 34579 50855 50855 0.07987421839698072 VRKFLLRY 8 Unmodified _VRKFLLRY_ 0 0 0 REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1 REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7776489257812 2 547.845294 1093.67603 NaN NaN NaN NaN NaN NaN NaN 137.43 1 132.59 132.09 133.09 -4.84 0 0 0 0.2396 1 26477 26477 0.62683 0.50396 1 + 51977 24964 34559 34580 50856 50856 0.13294311601794107 VRKFVLKK 8 Unmodified _VRKFVLKK_ 0 0 0 ENST00000587994.5_1_18:47322196-47323846:-|nuORF ENST00000587994.5_1_18:47322196-47323846:-|nuORF ENST00000587994.5_1_18:47322196-47323846:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 509.30377197265625 2 509.350212 1016.68587 -0.23487 -0.00011963 0.72679 0.00037019 0.49192 0.00025056 509.8519372587986 158.41 0.10266 153.14 153.09 153.19 -5.2748 4 2 2 0 0 0 8448 1 30744 30744 0 0 1 662690 51978 11567 34560 34581 50857 50857 0.17819499607185207 VRKGKKSKR 9 Unmodified _VRKGKKSKR_ 0 0 0 ENST00000379251.7_1_X:23801394-23801481:+|nuORF ENST00000379251.7_1_X:23801394-23801481:+|nuORF ENST00000379251.7_1_X:23801394-23801481:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.9120178222656 3 362.912125 1085.71454 NaN NaN NaN NaN NaN NaN NaN 10.846 1 10.846 10.346 11.346 0 0 0 0 0.23508 1 1387 1387 0 0 1 51979 9292 34561 34582 50858 50858 0.17511617236323218 VRKKKRRRRRR 11 Unmodified _VRKKKRRRRRR_ 0 0 0 REV__DEK|p.E11Rfs*53|1|0.4|ENSG00000124795|chr6:18263957-18263957|C/-|frameshift_variant REV__DEK|p.E11Rfs*53|1|0.4|ENSG00000124795|chr6:18263957-18263957|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 798.1886596679688 2 798.043099 1594.07164 NaN NaN NaN NaN NaN NaN NaN 169.9 1 165.11 164.61 165.61 -4.7898 0 0 0 0.22632 1 34448 34448 0 0 1 + 51980 13662 34562 34583 50859 50859 0.29837189566774214 VRKLFRVVAL 10 Unmodified _VRKLFRVVAL_ 0 0 0 REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2 REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 401.3537292480469 3 400.936159 1199.78665 NaN NaN NaN NaN NaN NaN NaN 11.374 1 10.308 9.8077 10.808 -1.0664 0 0 0 2.8426 1 1286 1286 0 0 1 + 51981 18681 34563 34584 50860 50860 0.19474531590049082 VRKLKGIPV 9 Unmodified _VRKLKGIPV_ 0 0 0 ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;CTNND1|p.S895Ifs*8|1|0.33|ENSG00000198561|chr11:57814353-57814354|-/A|frameshift_variant;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;CTNND1|p.Q800Tfs*4|1|0.46|ENSG00000198561|chr11:57809427-57809428|-/A|frameshift_variant;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.E842Kfs*10|1|0.19|ENSG00000198561|chr11:57810192-57810192|A/-|frameshift_variant;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.23406982421875 3 337.234205 1008.68079 NaN NaN NaN NaN NaN NaN NaN 4.6188 1 3.61 3.11 4.11 -1.0089 0 0 0 0.23508 1 105 105 0 0 1 51982 747 34564 34585 50861 50861 0.17679195744574372 VRKLKGIPV 9 Unmodified _VRKLKGIPV_ 0 0 0 ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;CTNND1|p.S895Ifs*8|1|0.33|ENSG00000198561|chr11:57814353-57814354|-/A|frameshift_variant;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;CTNND1|p.Q800Tfs*4|1|0.46|ENSG00000198561|chr11:57809427-57809428|-/A|frameshift_variant;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.E842Kfs*10|1|0.19|ENSG00000198561|chr11:57810192-57810192|A/-|frameshift_variant;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.5436706542969 3 337.234205 1008.68079 NaN NaN NaN NaN NaN NaN NaN 20.569 1 18.848 18.348 19.348 -1.7211 0 0 0 0.19635 1 3173 3173 0 0 1 51983 747 34564 34585 50862 50862 0.17679195744574372 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.190673828125 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 67.23 1 67.23 66.73 67.73 0 0 0 0 0.21486 1 12993 12993 0.45834 0 1 + 51984 13646 34565 34586 50863 50863 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.1758728027344 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 72.626 1 72.626 72.126 73.126 0 0 0 0 0.21486 1 14086 14086 0.45834 0 1 + 51985 13646 34565 34586 50864 50864 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.21142578125 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 78.956 1 78.956 78.456 79.456 0 0 0 0 0.21486 1 15368 15368 0 0 1 + 51986 13646 34565 34586 50865 50865 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.21197509765625 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 91.404 1 91.404 90.904 91.904 0 0 0 0 0.21486 1 17861 17861 0.45834 0 1 + 51987 13646 34565 34586 50866 50866 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.2119140625 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 91.918 1 91.918 91.418 92.418 0 0 0 0 0.21486 1 17971 17971 0.45834 0 1 + 51988 13646 34565 34586 50867 50867 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.1750793457031 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 91.957 1 91.957 91.457 92.457 0 0 0 0 0.21486 1 17979 17979 0.45834 0 1 + 51989 13646 34565 34586 50868 50868 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.22711181640625 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 97.387 1 97.387 96.887 97.887 0 0 0 0 0.21486 1 19085 19085 0 0 1 + 51990 13646 34565 34586 50869 50869 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.21209716796875 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 98.751 1 98.751 98.251 99.251 0 0 0 0 0.21486 1 19359 19359 0 0 1 + 51991 13646 34565 34586 50870 50870 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.21124267578125 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 99.024 1 99.024 98.524 99.524 0 0 0 0 0.21486 1 19418 19418 0 0 1 + 51992 13646 34565 34586 50871 50871 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.2180480957031 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 104.43 1 104.43 103.93 104.93 0 0 0 0 0.21486 1 20521 20521 0 0 1 + 51993 13646 34565 34586 50872 50872 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.19073486328125 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 104.81 1 104.81 104.31 105.31 0 0 0 0 0.21486 1 20599 20599 0.45834 0 1 + 51994 13646 34565 34586 50873 50873 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.1674499511719 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 111.14 1 111.14 110.64 111.64 0 0 0 0 0.21486 1 21861 21861 0 0 1 + 51995 13646 34565 34586 50874 50874 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 304.21185302734375 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 111.78 1 111.78 111.28 112.28 0 0 0 0 0.21486 1 21990 21990 0 0 1 + 51996 13646 34565 34586 50875 50875 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.2270812988281 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 90.692 1 86.833 86.333 87.333 -3.8595 0 0 0 0.21486 1 17745 17745 0.45834 0 1 + 51997 13646 34565 34586 50876 50876 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.22705078125 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 98.713 1 94.58 94.08 95.08 -4.1326 0 0 0 0.21486 1 19385 19385 0.45834 0 1 + 51998 13646 34565 34586 50877 50877 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.2119140625 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 100.58 1 96.418 95.918 96.918 -4.1594 0 0 0 0.21486 1 19768 19768 0.45834 0 1 + 51999 13646 34565 34586 50878 50878 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.211181640625 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 102.05 1 97.863 97.363 98.363 -4.1861 0 0 0 0.21486 1 20053 20053 0.45834 0 1 + 52000 13646 34565 34586 50879 50879 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.2119140625 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 103.37 1 99.185 98.685 99.685 -4.1861 0 0 0 0.21486 1 20323 20323 0.45834 0 1 + 52001 13646 34565 34586 50880 50880 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.2485046386719 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 107.35 1 103.03 102.53 103.53 -4.32 0 0 0 0.21486 1 21141 21141 0.45834 0 1 + 52002 13646 34565 34586 50881 50881 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 304.2119140625 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 107.42 1 103.1 102.6 103.6 -4.32 0 0 0 0.21486 1 21157 21157 0.45834 0 1 + 52003 13646 34565 34586 50882 50882 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.2353515625 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 5.5319 1 4.4919 3.9919 4.9919 -1.04 0 0 0 0.21486 1 285 285 0 0 1 + 52004 13646 34565 34586 50883 50883 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.2122802734375 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 97.564 1 93.329 92.829 93.829 -4.2348 0 0 0 0.21486 1 18638 18638 0.45834 0 1 + 52005 13646 34565 34586 50884 50884 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.21258544921875 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 175.73 1 170.86 170.36 171.36 -4.8739 0 0 0 0.21486 1 34947 34947 0.45834 0 1 + 52006 13646 34565 34586 50885 50885 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.1903076171875 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 97.632 1 93.713 93.213 94.213 -3.9194 0 0 0 0.2396 1 18738 18738 0.12286 0 1 + 52007 13646 34565 34586 50886 50886 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.226806640625 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 104.55 1 100.5 99.997 101 -4.0543 0 0 0 0.21486 1 20105 20105 0.45834 0 1 + 52008 13646 34565 34586 50887 50887 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.21197509765625 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 106.67 1 102.58 102.08 103.08 -4.0913 0 0 0 0.21486 1 20512 20512 0.45834 0 1 + 52009 13646 34565 34586 50888 50888 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.2478942871094 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 108.55 1 104.41 103.91 104.91 -4.135 0 0 0 0.21486 1 20885 20885 0.45834 0 1 + 52010 13646 34565 34586 50889 50889 0.15394951164716986 VRKLKGLP 8 Unmodified _VRKLKGLP_ 0 0 0 REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant REV__DCLRE1C|p.A378V|1|0.35|ENSG00000152457|chr10:14919761-14919761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.2274475097656 3 304.2114 909.612371 NaN NaN NaN NaN NaN NaN NaN 109.41 1 105.23 104.73 105.73 -4.1826 0 0 0 0.21486 1 21056 21056 0.45834 0 1 + 52011 13646 34565 34586 50890 50890 0.15394951164716986 VRKLKKQL 8 Unmodified _VRKLKKQL_ 0 0 0 nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant nc|ENSG00000197535|Q9Y4I1-2|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.2533874511719 3 338.237838 1011.69168 NaN NaN NaN NaN NaN NaN NaN 4.5153 1 3.8891 3.3891 4.3891 -0.62626 0 0 0 0.21486 1 101 101 0 0 1 52012 7376 34566 34587 50891 50891 0.18630598118852504 VRKLLMVV 8 Unmodified _VRKLLMVV_ 0 0 0 SLC13A4|p.L15M|1|0.08|ENSG00000164707|chr7:135727454-135727454|G/T|missense_variant SLC13A4|p.L15M|1|0.08|ENSG00000164707|chr7:135727454-135727454|G/T|missense_variant SLC13A4|p.L15M|1|0.08|ENSG00000164707|chr7:135727454-135727454|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.8722839355469 3 319.880774 956.620493 NaN NaN NaN NaN NaN NaN NaN 9.7667 1 8.9725 8.4725 9.4725 -0.79424 0 0 0 0.21486 1 1160 1160 0 0 1 52013 25671 34567 34588 50892 50892 0.14044762089838514 VRKMGRST 8 Unmodified _VRKMGRST_ 0 0 0 ENST00000369534.7_1_X:154010005-154010053:-|nuORF ENST00000369534.7_1_X:154010005-154010053:-|nuORF ENST00000369534.7_1_X:154010005-154010053:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.13287353515625 3 312.179883 933.517819 NaN NaN NaN NaN NaN NaN NaN 68.117 1 65.008 64.508 65.508 -3.1086 0 0 0 0.21486 1 13223 13223 1.4819 0 1 52014 9123 34568 34589 50893 50893 0.048400693510757264 VRKRAAVLFAT 11 Unmodified _VRKRAAVLFAT_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 412.6153869628906 3 411.259302 1230.75608 0.041495 1.7065E-05 -0.066833 -2.7486E-05 -0.025338 -1.042E-05 411.25927358642326 32.17 0.83131 32.17 31.844 32.675 0 75 23 5 0 0 0 0.66087 1 5845 5845 1.4551 0.8698 1 20001000 52015 6557 34569 34590 50894 50894 0.14992753204978726 VRKRAAVLFAT 11 Unmodified _VRKRAAVLFAT_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 411.259302 1230.75608 0.041495 1.7065E-05 -0.066833 -2.7486E-05 -0.025338 -1.042E-05 411.25927358642326 32.17 0.83131 32.17 31.844 32.675 0 0.16994 -4.0872E-05 NaN 1.4551 75 23 5 NaN NaN NaN NaN 0 NaN NaN 0 20001000 52016 6557 34569 34590 0.14992753204978726 VRKRAAVLFAT 11 Unmodified _VRKRAAVLFAT_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 411.259302 1230.75608 -0.30109 -0.00012383 0.26449 0.00010877 -0.036605 -1.5054E-05 411.2594046773789 34.297 0.62981 31.98 31.63 32.26 -2.3175 -0.019894 0.00036791 NaN 1.4551 61 17 5 NaN NaN NaN NaN 0 NaN NaN 0 13715000 52017 6557 34569 34590 0.14992753204978726 VRKRAAVLFAT 11 Unmodified _VRKRAAVLFAT_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 411.259302 1230.75608 0.18101 7.4443E-05 -0.23782 -9.7804E-05 -0.056803 -2.3361E-05 411.2591967759126 34.061 0.69001 31.914 31.6 32.29 -2.1468 -0.085823 -0.00025183 NaN 1.4551 73 19 5 NaN NaN NaN NaN 0 NaN NaN 0 22817000 52018 6557 34569 34590 0.14992753204978726 VRKRAAVLFAT 11 Unmodified _VRKRAAVLFAT_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 411.259302 1230.75608 -0.038557 -1.5857E-05 -0.062526 -2.5714E-05 -0.10108 -4.1571E-05 411.2592524763288 34.151 0.73783 31.936 31.562 32.299 -2.2158 -0.06422 -3.5558E-05 NaN 1.4551 63 20 4 NaN NaN NaN NaN 0 NaN NaN 0 12742000 52019 6557 34569 34590 0.14992753204978726 VRKVPPGY 8 Unmodified _VRKVPPGY_ 0 0 0 nc|ENSG00000137834|O43541-2|SMAD6;ENSG00000137834|ENST00000288840|SMAD6 nc|ENSG00000137834|O43541-2|SMAD6 nc|ENSG00000137834|O43541-2|SMAD6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2376403808594 2 458.27417 914.533787 NaN NaN NaN NaN NaN NaN NaN 176.18 1 171.31 170.81 171.81 -4.8739 0 0 0 0.21486 1 35041 35041 0.79363 0 1 52020 4119 34570 34591 50895 50895 0.07310098859613845 VRLAKKVLHPL 11 Unmodified _VRLAKKVLHPL_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.25091552734375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 135.3 1 130.41 129.91 130.91 -4.8951 0 0 0 0.23698 1 25990 25990 0.094841 0 1 + 52021 15443 34571 34592 50896 50896 0.21390489652844735 VRLAKKVLHPL 11 Unmodified _VRLAKKVLHPL_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2513427734375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 158.63 1 153.36 152.86 153.86 -5.2712 0 0 0 0.22632 1 30779 30779 0.026206 0 1 + 52022 15443 34571 34592 50897 50897 0.21390489652844735 VRLHPLIG 8 Unmodified _VRLHPLIG_ 0 0 0 REV__ENST00000530562.5_1_11:74563099-74632389:-|nuORF REV__ENST00000530562.5_1_11:74563099-74632389:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 302.2109069824219 3 302.19575 903.565421 NaN NaN NaN NaN NaN NaN NaN 128.51 1 123.88 123.38 124.38 -4.6292 0 0 0 0.21486 1 25337 25337 0.45834 0 1 + 52023 17849 34572 34593 50898 50898 0.10978091613571905 VRLHWWWPKKE 11 Unmodified _VRLHWWWPKKE_ 0 0 0 REV__nc|ENSG00000160200|P35520-2|CBS REV__nc|ENSG00000160200|P35520-2|CBS MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.27294921875 3 522.289372 1563.84629 NaN NaN NaN NaN NaN NaN NaN 86.112 1 82.383 81.883 82.883 -3.7289 0 0 0 0.22632 1 16463 16463 0.50596 0.33396 1 + 52024 17402 34573 34594 50899 50899 0.08691802533394366 VRLKIIIIL 9 Unmodified _VRLKIIIIL_ 0 0 0 ENST00000468148.5_1_6:57086941-57087007:-|nuORF ENST00000468148.5_1_6:57086941-57087007:-|nuORF ENST00000468148.5_1_6:57086941-57087007:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2736206054688 2 540.896995 1079.77944 0.46594 0.00025203 2.6873 0.0014536 3.1533 0.0017056 541.4004284451959 119.85 0.10294 115.39 115.3 115.4 -4.467 4 2 2 0 0 0 0.65257 1 23069 23069 0.073264 0 1 875990 52025 10163 34574 34595 50900 50900 0.2427379898961135 VRLLLLLLL 9 Unmodified _VRLLLLLLL_ 0 0 0 ENSG00000142538|ENST00000270631|PTH2 REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.266357421875 2 533.391545 1064.76854 NaN NaN NaN NaN NaN NaN NaN 150.91 1 145.67 145.17 146.17 -5.2365 0 0 0 0.19635 1 29247 29247 0 0 1 52026 4424 34575 34596 50901 50901 0.238743966153379 VRLLLLLLL 9 Unmodified _VRLLLLLLL_ 0 0 0 ENSG00000142538|ENST00000270631|PTH2 REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2733764648438 2 533.391545 1064.76854 0.31476 0.00016789 1.2463 0.00066478 1.5611 0.00083267 533.8939526063084 139.92 0.10431 135.07 134.98 135.09 -4.8492 4 2 2 0 0 0 0.65565 1 26969 26969 0 0 1 647430 52027 4424 34575 34596 50902 50902 0.238743966153379 VRLLLLLLLL 10 Unmodified _VRLLLLLLLL_ 0 0 0 ENSG00000142538|ENST00000270631|PTH2 REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 589.7365112304688 2 589.933577 1177.8526 NaN NaN NaN NaN NaN NaN NaN 174.76 1 169.87 169.37 170.37 -4.8845 0 0 0 2.8426 1 34727 34727 0 0 1 52028 4424 34576 34597 50903 50903 0.27078927712250334 VRLLPKVRL 9 Unmodified _VRLLPKVRL_ 0 0 0 ENST00000573951.1_1_16:3313772-3314576:+|nuORF ENST00000573951.1_1_16:3313772-3314576:+|nuORF ENST00000573951.1_1_16:3313772-3314576:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7881469726562 2 547.382043 1092.74953 0.45487 0.00024899 -3.8039 -0.0020822 -3.349 -0.0018332 547.8837410529417 153.03 0.21562 147.81 147.72 147.93 -5.2209 6 5 2 0 0 0 0.65319 1 29674 29674 0.073264 0 1 972550 52029 11441 34577 34598 50904 50904 0.2068686004427036 VRLLRLHELWR 11 Unmodified _VRLLRLHELWR_ 0 0 0 REV__ENST00000578270.5_1_18:19239172-19243683:-|nuORF REV__ENST00000578270.5_1_18:19239172-19243683:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 497.75604248046875 3 497.640405 1489.89939 NaN NaN NaN NaN NaN NaN NaN 128.35 1 128.35 127.85 128.85 0 0 0 0 0.22632 1 25349 25349 0.50596 0.47975 1 + 52030 23224 34578 34599 50905 50905 0.17403180316068756 VRLLRLHP 8 Unmodified _VRLLRLHP_ 0 0 0 TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant;ENSG00000167333|ENST00000300747|TRIM68;ENST00000532108.1_1_11:4623360-4626734:-|nuORF TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 335.1816711425781 3 335.222299 1002.64507 NaN NaN NaN NaN NaN NaN NaN 37.078 1 34.74 34.24 35.24 -2.3375 0 0 0 0.2396 1 6553 6553 0.30703 0 1 52031 5803 34579 34600 50906 50906 0.14385158287552713 VRLLRLLRL 9 Unmodified _VRLLRLLRL_ 0 0 0 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant;ENSG00000089558|ENST00000264661|KCNH4;ENST00000452398.5_1_3:19388190-19491848:+|nuORF;KCNH8|p.M380Wfs*9|1|0.44|ENSG00000183960|chr3:19395268-19395268|A/-|frameshift_variant;KCNH8|p.G414Afs*16|1|0.44|ENSG00000183960|chr3:19438222-19438222|G/-|frameshift_variant;KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant;KCNH3|p.W987Gfs*47|1|0.28|ENSG00000135519|chr12:49557655-49557655|C/-|frameshift_variant;ENSG00000135519|ENST00000257981|KCNH3;ENSG00000183960|ENST00000328405|KCNH8 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant;KCNH3|p.M812Cfs*9|1|0.13|ENSG00000135519|chr12:49555911-49555911|C/-|frameshift_variant;ENSG00000183960|ENST00000328405|KCNH8 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3369750976562 2 576.408592 1150.80263 NaN NaN NaN NaN NaN NaN NaN 171.03 1 171.03 170.53 171.53 0 0 0 0 0.23508 1 35207 35207 0.52476 0 1 52032 1763;6882;3931 34580 34601 50907 50907 0.23326237826927354 VRLPFCGH 8 Unmodified _VRLPFCGH_ 0 0 0 ENST00000471851.1_1_7:5266712-5270575:+|nuORF;nc|ENSG00000157954|Q9Y4P8-3|WIPI2;ENST00000466014.5_1_7:5232953-5270575:+|nuORF;nc|ENSG00000157954|Q9Y4P8-2|WIPI2;nc|ENSG00000157954|Q9Y4P8-4|WIPI2;nc|ENSG00000157954|Q9Y4P8-5|WIPI2;nc|ENSG00000157954|Q9Y4P8-6|WIPI2;ENSG00000157954|ENST00000288828|WIPI2 ENST00000471851.1_1_7:5266712-5270575:+|nuORF ENST00000471851.1_1_7:5266712-5270575:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650695800781 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 10.923 1 9.8565 9.3565 10.356 -1.0664 0 0 0 0.2396 1 1208 1208 0.12286 0 1 52033 5146 34581 34602 50908 50908 0.008252992936263581 VRLQTQTT 8 Unmodified _VRLQTQTT_ 0 0 0 ENST00000533629.5_1_11:65144527-65149406:-|nuORF;ENSG00000162241|ENST00000398802|SLC25A45 ENST00000533629.5_1_11:65144527-65149406:-|nuORF ENST00000533629.5_1_11:65144527-65149406:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.1637878417969 3 316.182058 945.524344 NaN NaN NaN NaN NaN NaN NaN 134.46 1 134.46 133.96 134.96 0 0 0 0 0.21486 1 26618 26618 0.40072 0 1 52034 5318 34582 34603 50909 50909 0.04940285783402487 VRLRCKRR 8 Unmodified _VRLRCKRR_ 0 0 0 REV__ENST00000428040.6_1_6:30314274-30314612:+|nuORF REV__ENST00000428040.6_1_6:30314274-30314612:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 362.89752197265625 3 362.897821 1085.67163 NaN NaN NaN NaN NaN NaN NaN 10.021 1 8.9276 8.4276 9.4276 -1.0936 0 0 0 0.21486 1 1111 1111 0 0 1 + 52035 21586 34583 34604 50910 50910 0.13222523907234063 VRLRLKKRLRK 11 Unmodified _VRLRLKKRLRK_ 0 0 0 REV__ENST00000552369.5_1_12:49233297-49239534:-|nuORF REV__ENST00000552369.5_1_12:49233297-49239534:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 489.3467102050781 3 489.347444 1465.0205 NaN NaN NaN NaN NaN NaN NaN 167.44 1 167.44 166.94 167.94 0 0 0 0 0.23698 1 34215 34215 0 0 1 + 52036 22945 34584 34605 50911 50911 0.3065942774935593 VRLRPGLLK 9 Unmodified _VRLRPGLLK_ 0 0 0 ENST00000530725.5_1_8:61421296-61429236:-|nuORF ENST00000530725.5_1_8:61421296-61429236:-|nuORF ENST00000530725.5_1_8:61421296-61429236:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 526.3302001953125 2 526.358568 1050.70258 NaN NaN NaN NaN NaN NaN NaN 156.96 1 151.67 151.17 152.17 -5.2854 0 0 0 0.19649 1 30453 30453 0.40827 0 1 52037 10959 34585 34606 50912 50912 0.1792600049311659 VRLTTLLLL 9 Unmodified _VRLTTLLLL_ 0 0 0 REV__ENST00000397573.5_1_15:40398252-40398620:-|nuORF REV__ENST00000397573.5_1_15:40398252-40398620:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 347.9123840332031 3 347.905865 1040.69577 NaN NaN NaN NaN NaN NaN NaN 10.062 1 8.968 8.468 9.468 -1.0936 0 0 0 0.23508 1 1120 1120 0 0 1 + 52038 21309 34586 34607 50913 50913 0.1770464282192279 VRLVIHLALLP 11 Unmodified _VRLVIHLALLP_ 0 0 0 REV__ENST00000427063.6_1_10:29710449-29710551:+|nuORF REV__ENST00000427063.6_1_10:29710449-29710551:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7587890625 2 622.416083 1242.81761 NaN NaN NaN NaN NaN NaN NaN 132.05 1 132.05 131.55 132.55 0 0 0 0 0.22632 1 26102 26102 0.026206 0 1 + 52039 21575 34587 34608 50914 50914 0.2059168490425236 VRLVILHVSL 10 Unmodified _VRLVILHVSL_ 0 0 0 REV__APC|p.S1355Ffs*62|1|0.37|ENSG00000134982|chr5:112839653-112839654|-/TTTTT|frameshift_variant REV__APC|p.S1355Ffs*62|1|0.37|ENSG00000134982|chr5:112839653-112839654|-/TTTTT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 575.400390625 2 574.879333 1147.74411 0.30132 0.00017322 -1.4606 -0.00083966 -1.1593 -0.00066644 574.8783296165459 171.78 0.13335 171.78 171.67 171.81 0 5 3 2 0 0 0 0.75676 1 35425 35425 3.5965 0 1 5663900 + 52040 13081 34588 34609 50915 50915 0.17615136461790826 VRLYYMLH 8 Unmodified _VRLYYMLH_ 0 0 0 nc|ENSG00000165061|Q9H898-2|ZMAT4;ENSG00000165061|ENST00000297737|ZMAT4 nc|ENSG00000165061|Q9H898-2|ZMAT4 nc|ENSG00000165061|Q9H898-2|ZMAT4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7875366210938 2 547.794412 1093.57427 NaN NaN NaN NaN NaN NaN NaN 119.07 1 114.43 113.93 114.93 -4.645 0 0 0 0.23312 1 22847 22847 6.2058 0 1 52041 5592 34589 34610 50916 50916 0.031226971877231335 VRMKHIPSR 9 Unmodified _VRMKHIPSR_ 0 0 0 ENST00000450390.6_1_1:1189931-1190276:-|nuORF ENST00000450390.6_1_1:1189931-1190276:-|nuORF ENST00000450390.6_1_1:1189931-1190276:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.22210693359375 3 375.222082 1122.64442 NaN NaN NaN NaN NaN NaN NaN 60.05 1 56.826 56.326 57.326 -3.2237 0 0 0 0.23508 1 11227 11227 8.9762 1.0308 1 52042 9973 34590 34611 50917 50917 0.08799995576191577 VRPCIRKKR 9 Unmodified _VRPCIRKKR_ 0 0 0 AluJb_dup87692|chr12:125798275-125798456:-|1.5878392036766538|0.000958979254526|10.69|371.0|10|3|sense AluJb_dup87692|chr12:125798275-125798456:-|1.5878392036766538|0.000958979254526|10.69|371.0|10|3|sense AluJb_dup87692|chr12:125798275-125798456:-|1.5878392036766538|0.000958979254526|10.69|371.0|10|3|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 385.9203186035156 3 385.91336 1154.71825 NaN NaN NaN NaN NaN NaN NaN 11.585 1 11.585 11.085 12.085 0 0 0 0 0.23508 1 1547 1547 0 0 1 52043 128 34591 34612 50918 50918 0.1470796373853318 VRPFHTAT 8 Unmodified _VRPFHTAT_ 0 0 0 REV__nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 REV__nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1715087890625 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 104.86 1 100.65 100.15 101.15 -4.2183 0 0 0 0.21486 1 20630 20630 1.6526 0 1 + 52044 14665 34592 34613 50919 50919 0.026003378201380656 VRPHEPPP 8 Unmodified _VRPHEPPP_ 0 0 0 ENSG00000112290|ENST00000392589|WASF1;WASF1|p.P326Tfs*77|1|0.19|ENSG00000112290|chr6:110102135-110102136|-/G|frameshift_variant ENSG00000112290|ENST00000392589|WASF1 ENSG00000112290|ENST00000392589|WASF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1695556640625 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 43.887 1 43.887 43.387 44.387 0 0 0 0 0.21486 1 8223 8223 7.2892 3.3448 1 52045 2681 34593 34614 50920 50920 0.026003378201380656 VRPHEPPP 8 Unmodified _VRPHEPPP_ 0 0 0 ENSG00000112290|ENST00000392589|WASF1;WASF1|p.P326Tfs*77|1|0.19|ENSG00000112290|chr6:110102135-110102136|-/G|frameshift_variant ENSG00000112290|ENST00000392589|WASF1 ENSG00000112290|ENST00000392589|WASF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1710205078125 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 53.727 1 50.639 50.139 51.139 -3.0876 0 0 0 0.21486 1 9894 9894 1.8442 0 1 52046 2681 34593 34614 50921 50921 0.026003378201380656 VRPKPLLLKL 10 Unmodified _VRPKPLLLKL_ 0 0 0 ENST00000493419.1_1_12:69202221-69210726:+|nuORF;MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-7|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-9|MDM2 ENST00000493419.1_1_12:69202221-69210726:+|nuORF ENST00000493419.1_1_12:69202221-69210726:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 588.916015625 2 588.913176 1175.8118 NaN NaN NaN NaN NaN NaN NaN 176.8 1 176.8 176.3 177.3 0 0 0 0 2.8426 1 36626 36626 0 0 1 52047 3944 34594 34615 50922 50922 0.23092586392613157 VRPLRLLRR 9 Unmodified _VRPLRLLRR_ 0 0 0 REV__ENST00000573956.1_1_17:79857089-79857644:+|nuORF REV__ENST00000573956.1_1_17:79857089-79857644:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2581176757812 2 589.901466 1177.78838 NaN NaN NaN NaN NaN NaN NaN 70.073 1 66.824 66.324 67.324 -3.2492 0 0 0 0.19635 1 13632 13632 0 0 1 + 52048 23190 34595 34616 50923 50923 0.20659585398630043 VRPPLLLLLLL 11 Unmodified _VRPPLLLLLLL_ 0 0 0 REV__nc|ENSG00000155093|Q92932-2|PTPRN2 REV__nc|ENSG00000155093|Q92932-2|PTPRN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7615966796875 2 630.444309 1258.87407 NaN NaN NaN NaN NaN NaN NaN 84.609 1 84.609 84.109 85.109 0 0 0 0 0.22632 1 16506 16506 0 0 1 + 52049 17207 34596 34617 50924 50924 0.25498312740955953 VRPPLLLLLLL 11 Unmodified _VRPPLLLLLLL_ 0 0 0 REV__nc|ENSG00000155093|Q92932-2|PTPRN2 REV__nc|ENSG00000155093|Q92932-2|PTPRN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7600708007812 2 630.444309 1258.87407 NaN NaN NaN NaN NaN NaN NaN 107.79 1 107.79 107.29 108.29 0 0 0 0 0.22632 1 21196 21196 0 0 1 + 52050 17207 34596 34617 50925 50925 0.25498312740955953 VRPPVPQSP 9 Unmodified _VRPPVPQSP_ 0 0 0 REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2737121582031 2 488.782359 975.550165 0.32759 0.00016012 -0.3063 -0.00014971 0.021291 1.0407E-05 488.7822819187795 39.812 4.4595 39.812 38.459 42.919 0 273 126 4 0 0 0 0.60061 1 7235 7235 13.042 1.4022 1 12633000 + 52051 22116 34597 34618 50926 50926 0.06141180025713311 VRPPVPQSP 9 Unmodified _VRPPVPQSP_ 0 0 0 REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2746276855469 2 488.782359 975.550165 0.074095 3.6216E-05 -0.12012 -5.8713E-05 -0.046025 -2.2496E-05 488.7823808660264 42.374 4.7695 39.723 38.478 43.248 -2.651 296 135 4 0 0 0 0.52396 1 7491 7491 18.146 3.3081 1 12714000 + 52052 22116 34597 34618 50927 50927 0.06141180025713311 VRPPVPQSP 9 Unmodified _VRPPVPQSP_ 0 0 0 REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2680358886719 2 488.782359 975.550165 -0.24553 -0.00012001 0.16162 7.8997E-05 -0.083906 -4.1012E-05 488.7825090238437 42.154 4.8415 39.548 38.415 43.257 -2.606 287 137 4 0 0 0 0.52396 4 7633 7409;7541;7584;7633 18.146 3.3081 1 11652000 + 52053 22116 34597 34618 50928;50929;50930;50931 50931 0.06141180025713311 VRPPVPQSP 9 Unmodified _VRPPVPQSP_ 0 0 0 REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 488.782359 975.550165 0.32759 0.00016012 -0.3063 -0.00014971 0.021291 1.0407E-05 488.7822819187795 39.812 4.4595 39.812 38.459 42.919 0 0.1317 -0.00022067 NaN 18.146 273 126 4 NaN NaN NaN NaN 0 NaN NaN 0 12633000 + 52054 22116 34597 34618 0.06141180025713311 VRPPVPQSP 9 Unmodified _VRPPVPQSP_ 0 0 0 REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 488.782359 975.550165 -0.0060951 -2.9792E-06 -0.13096 -6.4011E-05 -0.13706 -6.699E-05 488.7823652753541 42.357 4.4956 39.637 38.487 42.983 -2.7191 -0.042541 -4.9269E-05 NaN 18.146 274 127 3 NaN NaN NaN NaN 0 NaN NaN 0 17034000 + 52055 22116 34597 34618 0.06141180025713311 VRPPVPQSP 9 Unmodified _VRPPVPQSP_ 0 0 0 REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 488.782359 975.550165 0.074095 3.6216E-05 -0.12012 -5.8713E-05 -0.046025 -2.2496E-05 488.7823808660264 42.374 4.7695 39.723 38.478 43.248 -2.651 0.043226 -3.8672E-05 NaN 18.146 296 135 4 NaN NaN NaN NaN 0 NaN NaN 0 12714000 + 52056 22116 34597 34618 0.06141180025713311 VRPPVPQSP 9 Unmodified _VRPPVPQSP_ 0 0 0 REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF REV__ENST00000477234.1_1_22:50905166-50905766:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 488.782359 975.550165 -0.24553 -0.00012001 0.16162 7.8997E-05 -0.083906 -4.1012E-05 488.7825090238437 42.154 4.8415 39.548 38.415 43.257 -2.606 -0.13239 0.00023675 NaN 18.146 287 137 4 NaN NaN NaN NaN 0 NaN NaN 0 11652000 + 52057 22116 34597 34618 0.06141180025713311 VRPPVQVY 8 Unmodified _VRPPVQVY_ 0 0 0 ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO ENST00000495005.5_1_21:35281377-35288052:-|nuORF ENST00000495005.5_1_21:35281377-35288052:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7411193847656 2 479.279452 956.544351 -0.091206 -4.3713E-05 -0.053845 -2.5807E-05 -0.14505 -6.952E-05 479.27927940423314 79.162 0.97867 75.486 74.96 75.939 -3.676 38 27 2 0 0 0 0.81042 1 15067 15067 23.148 3.7094 1 1596100 52058 7857 34598 34619 50932 50932 0.0643408151404401 VRPPVQVY 8 Unmodified _VRPPVQVY_ 0 0 0 ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO ENST00000495005.5_1_21:35281377-35288052:-|nuORF ENST00000495005.5_1_21:35281377-35288052:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.279452 956.544351 0.1154 5.5308E-05 -0.15557 -7.456E-05 -0.040168 -1.9251E-05 479.27923845433565 75.561 0.82563 75.561 74.993 75.819 0 -0.017071 -5.0148E-05 NaN 23.148 41 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1798800 52059 7857 34598 34619 0.0643408151404401 VRPTHSPI 8 Unmodified _VRPTHSPI_ 0 0 0 REV__ENST00000591909.5_1_18:12329178-12329334:+|nuORF REV__ENST00000591909.5_1_18:12329178-12329334:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7633972167969 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 118.9 1 118.9 118.4 119.4 0 0 0 0 0.23487 1 23420 23420 0.12286 0 1 + 52060 23346 34599 34620 50933 50933 0.0517662433719579 VRQHLEVY 8 Unmodified _VRQHLEVY_ 0 0 0 nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9;ENST00000591459.1_1_17:66873607-66873826:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8 nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000141338|O94911-1|ABCA8 nc|ENSG00000154258|Q8IUA7-4|ABCA9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2711181640625 2 522.285266 1042.55598 NaN NaN NaN NaN NaN NaN NaN 68.144 1 64.754 64.254 65.254 -3.3903 0 0 0 0.21486 1 12859 12859 8.5933 0 1 52061 5003;4355 34600 34621 50934 50934 0.03640278537386621 VRQKILKSVLA 11 Unmodified _VRQKILKSVLA_ 0 0 0 REV__ENST00000435962.6_1_14:92280167-92333840:-|nuORF REV__ENST00000435962.6_1_14:92280167-92333840:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 418.9320983886719 3 418.946724 1253.81834 NaN NaN NaN NaN NaN NaN NaN 10.86 1 9.7668 9.2668 10.267 -1.0936 0 0 0 0.23698 1 1258 1258 0 0 1 + 52062 21664 34601 34622 50935 50935 0.201584795533563 VRQVLLNRP 9 Unmodified _VRQVLLNRP_ 0 0 0 REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7760009765625 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 12.402 1 11.273 10.773 11.773 -1.1293 0 0 0 0.23508 1 1517 1517 1.8442 0 1 + 52063 21688 34602 34623 50936 50936 0.12892222108098395 VRRALARA 8 Unmodified _VRRALARA_ 0 0 0 nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.8546142578125 3 304.866515 911.577717 NaN NaN NaN NaN NaN NaN NaN 9.2145 1 8.1799 7.6799 8.6799 -1.0347 0 0 0 0.21486 1 922 922 0 0 1 52064 5543 34603 34624 50937 50937 0.11839128076587713 VRRALARA 8 Unmodified _VRRALARA_ 0 0 0 nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.8706970214844 3 304.866515 911.577717 NaN NaN NaN NaN NaN NaN NaN 9.4265 1 8.3918 7.8918 8.8918 -1.0347 0 0 0 0.21486 1 961 961 0 0 1 52065 5543 34603 34624 50938 50938 0.11839128076587713 VRRCRKRL 8 Unmodified _VRRCRKRL_ 0 0 0 REV__ENST00000355827.8_1_X:95939790-95940039:+|nuORF REV__ENST00000355827.8_1_X:95939790-95940039:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.8976135253906 3 362.897821 1085.67163 NaN NaN NaN NaN NaN NaN NaN 9.2475 1 9.2475 8.7475 9.7475 0 0 0 0 0.21486 1 1049 1049 0 0 1 + 52066 20800 34604 34625 50939 50939 0.132225239072568 VRRFKVRAAK 10 Unmodified _VRRFKVRAAK_ 0 0 0 REV__ENST00000476624.1_1_9:130688065-130688256:-|nuORF REV__ENST00000476624.1_1_9:130688065-130688256:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 615.89794921875 2 615.898923 1229.78329 NaN NaN NaN NaN NaN NaN NaN 172.61 1 167.73 167.23 168.23 -4.881 0 0 0 0.22588 1 34274 34274 10.074 1.3285 1 + 52067 22108 34605 34626 50940 50940 0.17759281536041271 VRRHIKKRPA 10 Unmodified _VRRHIKKRPA_ 0 0 0 REV__ENSG00000174444|ENST00000307961|RPL4 REV__ENSG00000174444|ENST00000307961|RPL4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7733764648438 2 630.909822 1259.80509 NaN NaN NaN NaN NaN NaN NaN 136.21 1 131.57 131.07 132.07 -4.6399 0 0 0 2.8426 1 26875 26875 0.043787 0.042406 1 + 52068 18415 34606 34627 50941 50941 0.18558086284610908 VRRPERPSEPS 11 Unmodified _VRRPERPSEPS_ 0 0 0 REV__ENST00000493618.5_1_2:242577129-242598937:+|nuORF REV__ENST00000493618.5_1_2:242577129-242598937:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.22821044921875 3 437.237225 1308.68985 NaN NaN NaN NaN NaN NaN NaN 66.341 1 63.015 62.515 63.515 -3.3268 0 0 0 0.22632 1 12487 12487 0.026206 0.024825 1 + 52069 22353 34607 34628 50942 50942 0.047848925722973945 VRRPKGRS 8 Unmodified _VRRPKGRS_ 0 0 0 REV__ENST00000523629.5_1_8:93088358-93115443:-|nuORF REV__ENST00000523629.5_1_8:93088358-93115443:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 319.2019348144531 3 319.201787 954.583531 NaN NaN NaN NaN NaN NaN NaN 94.916 1 94.916 94.416 95.416 0 0 0 0 0.21486 1 18590 18590 0.35063 0 1 + 52070 22611 34608 34629 50943 50943 0.10442226588281756 VRRPSGEI 8 Unmodified _VRRPSGEI_ 0 0 0 tr|U7SV24|U7SV24_FUSNUMetal-dependentenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01486PE=4SV=1 tr|U7SV24|U7SV24_FUSNUMetal-dependentenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01486PE=4SV=1 tr|U7SV24|U7SV24_FUSNUMetal-dependentenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01486PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2392272949219 2 457.264333 912.514114 0.15141 6.9233E-05 0.14613 6.6819E-05 0.29753 0.00013605 457.2642957852979 127.1 2.9937 122.4 121.97 124.97 -4.6998 129 84 3 0 0 0 0.83982 1 24548 24548 2.5775 0 1 4284200 52071 26229 34609 34630 50944 50944 0.05435722848869773 VRRREYPF 8 Unmodified _VRRREYPF_ 0 0 0 REV__nc|ENSG00000148288|Q8N5D6-3|GBGT1 REV__nc|ENSG00000148288|Q8N5D6-3|GBGT1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2189636230469 3 374.87708 1121.60941 NaN NaN NaN NaN NaN NaN NaN 51.37 1 48.488 47.988 48.988 -2.8824 0 0 0 0.21486 1 9759 9759 7.2892 0.18751 1 + 52072 16966 34610 34631 50945 50945 0.053470760399022765 VRRRHERRRYN 11 Unmodified _VRRRHERRRYN_ 0 0 0 sp|P16755|UL13_HCMVAUncharacterizedproteinUL13OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL13PE=1SV=1;sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 sp|P16755|UL13_HCMVAUncharacterizedproteinUL13OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL13PE=1SV=1;sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2698364257812 3 533.305078 1596.89341 NaN NaN NaN NaN NaN NaN NaN 150.83 1 146.1 145.6 146.6 -4.7323 0 0 0 0.22632 1 29959 29959 0.094841 0 1 52073 25753;25767 34611 34632 50946 50946 0.1188347485713166 VRRRRRRQRQR 11 Unmodified _VRRRRRRQRQR_ 0 0 0 ENST00000560608.5_1_15:58971480-59041769:-|nuORF;ENST00000561149.1_1_15:58974496-59041769:-|nuORF;ENST00000558733.5_1_15:58947546-59041769:-|nuORF ENST00000560608.5_1_15:58971480-59041769:-|nuORF ENST00000560608.5_1_15:58971480-59041769:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.77197265625 3 541.675617 1622.00502 0.24699 0.00013379 1.5223 0.00082457 1.7692 0.00095836 541.6755223128378 139.2 0.17432 134.56 134.48 134.65 -4.6439 6 4 2 0 0 0 0.89136 1 27473 27473 0 0 1 894930 52074 11268 34612 34633 50947 50947 0.2188995400490512 VRRRRRRRRRH 11 Unmodified _VRRRRRRRRRH_ 0 0 0 ENST00000356978.8_1_14:90863393-90866410:+|nuORF;ENST00000447653.7_1_14:90863393-90865345:+|nuORF ENST00000356978.8_1_14:90863393-90866410:+|nuORF ENST00000356978.8_1_14:90863393-90866410:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 554.0244140625 3 554.02324 1659.04789 NaN NaN NaN NaN NaN NaN NaN 171.64 1 171.64 171.14 172.14 0 0 0 0 0.23698 1 35378 35378 0 0 1 52075 8974 34613 34634 50948 50948 0.24472768852979243 VRRRRRRRRWK 11 Unmodified _VRRRRRRRRWK_ 0 0 0 REV__ENST00000303961.8_1_19:41306371-41306464:+|nuORF REV__ENST00000303961.8_1_19:41306371-41306464:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 561.0284423828125 3 561.027991 1680.06214 NaN NaN NaN NaN NaN NaN NaN 168.45 1 168.45 167.95 168.95 0 0 0 0 0.23698 1 34499 34499 0 0 1 + 52076 20422 34614 34635 50949 50949 0.24931421281257826 VRRTWRRRRRM 11 Unmodified _VRRTWRRRRRM_ 0 0 0 REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7703857421875 3 543.658687 1627.95423 0.3398 0.00018473 -1.6392 -0.00089118 -1.2994 -0.00070644 543.6561998702765 149.01 0.13594 149.01 148.96 149.1 0 6 3 2 0 0 0 0.96227 1 29834 29834 0.08335 0.010087 1 1459800 + 52077 20308 34615 34636 50950 50950 0.16537288635663572 VRRVLLRWY 9 Unmodified _VRRVLLRWY_ 0 0 0 ENST00000379847.3_9:32573035-32573095:-|nuORF ENST00000379847.3_9:32573035-32573095:-|nuORF ENST00000379847.3_9:32573035-32573095:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7547607421875 2 630.888024 1259.7615 NaN NaN NaN NaN NaN NaN NaN 120.37 1 115.9 115.4 116.4 -4.467 0 0 0 0.19624 1 23177 23177 0.073264 0 1 52078 9306 34616 34637 50951 50951 0.1420047678748233 VRRWRRRR 8 Unmodified _VRRWRRRR_ 0 0 0 REV__ENST00000181839.8_1_7:39989713-39989800:+|nuORF REV__ENST00000181839.8_1_7:39989713-39989800:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.22210693359375 4 310.948516 1239.76496 -0.93165 -0.0002897 -0.35236 -0.00010956 -1.284 -0.00039926 310.94829843817274 13.936 0.21207 12.822 12.699 12.911 -1.1142 9 5 2 0 0 0 0.89856 1 2032 2032 0 0 1 242410 + 52079 19988 34617 34638 50952 50952 0.15466584404657624 VRSGACKKEV 10 Unmodified _VRSGACKKEV_ 0 0 0 tr|U7T6Q4|U7T6Q4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00163PE=3SV=1 tr|U7T6Q4|U7T6Q4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00163PE=3SV=1 tr|U7T6Q4|U7T6Q4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00163PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2127685546875 3 359.534214 1075.58081 -0.57706 -0.00020747 0.016663 5.9909E-06 -0.5604 -0.00020148 359.53436367715295 67.661 0.91178 67.661 67.124 68.035 0 48 25 3 0 0 0 0.42762 1 13148 13148 10.151 9.8852 1 2768600 52080 26499 34618 34639 50953 50953 0.046045903484582595 VRSIPAKKK 9 Unmodified _VRSIPAKKK_ 0 0 0 ENST00000525941.1_1_11:784028-784256:+|nuORF ENST00000525941.1_1_11:784028-784256:+|nuORF ENST00000525941.1_1_11:784028-784256:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.2131042480469 3 342.897593 1025.67095 0.68647 0.00023539 -1.6366 -0.00056117 -0.95008 -0.00032578 342.8971850866476 27.183 0.67376 25.401 25.202 25.875 -1.7821 29 18 2 0 0 0 0.6109 1 4886 4886 0.073264 0 1 3867800 52081 10905 34619 34640 50954 50954 0.15914007739161207 VRSSKELLYG 10 Unmodified _VRSSKELLYG_ 0 0 0 REV__NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant REV__NBEA|p.N1121Mfs*9|2|0.36|ENSG00000172915|chr13:35159526-35159526|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.324951171875 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 158.15 1 152.88 152.38 153.38 -5.2712 0 0 0 2.8426 1 30685 30685 1.9064 0.9441 1 + 52082 23919 34620 34641 50955 50955 0.06533086051808823 VRSTQLFLVP 10 Unmodified _VRSTQLFLVP_ 0 0 0 REV__ENST00000532642.5_1_1:44443592-44443676:+|nuORF REV__ENST00000532642.5_1_1:44443592-44443676:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.8687744140625 3 387.232641 1158.67609 -2.1935 -0.00084938 -0.10445 -4.0447E-05 -2.2979 -0.00088983 387.2326025936784 15.831 0.30698 14.478 14.341 14.648 -1.3534 17 8 3 0 0 0 0.53029 1 2212 2212 0.13989 0 1 717330 + 52083 22788 34621 34642 50956 50956 0.10310266811120528 VRSVVPFLRL 10 Unmodified _VRSVVPFLRL_ 0 0 0 REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43 REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 395.88330078125 3 395.920397 1184.73936 NaN NaN NaN NaN NaN NaN NaN 9.0907 1 8.0561 7.5561 8.5561 -1.0347 0 0 0 0.22588 1 900 900 0.15932 0 1 + 52084 13982 34622 34643 50957 50957 0.15438252319040657 VRTADRETF 9 Unmodified _VRTADRETF_ 0 0 0 REV__ENSG00000159792|ENST00000291041|PSKH1 REV__ENSG00000159792|ENST00000291041|PSKH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7828979492188 2 547.783087 1093.55162 0.51271 0.00028085 0.21458 0.00011754 0.72729 0.0003984 547.7827703957947 32.761 0.49206 30.613 30.35 30.842 -2.1483 25 13 3 0 0 0 0.60489 1 5718 5718 2.4985 0 1 856810 + 52085 17382 34623 34644 50958 50958 0.008587693238041538 VRTFVTPKWIF 11 Unmodified _VRTFVTPKWIF_ 0 0 0 REV__ENSG00000142789|ENST00000290122|CELA3A REV__ENSG00000142789|ENST00000290122|CELA3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2496032714844 3 465.271207 1392.79179 NaN NaN NaN NaN NaN NaN NaN 110.96 1 110.96 110.46 111.46 0 0 0 0 0.22632 1 21827 21827 0.58532 0.41332 1 + 52086 16689 34624 34645 50959 50959 0.11110790661973624 VRVGHKRQLWY 11 Unmodified _VRVGHKRQLWY_ 0 0 0 REV__nc|ENSG00000160746|Q9NW15-2|ANO10 REV__nc|ENSG00000160746|Q9NW15-2|ANO10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2411804199219 3 481.277355 1440.81024 NaN NaN NaN NaN NaN NaN NaN 110.44 1 106.06 105.56 106.56 -4.3776 0 0 0 0.22632 1 21768 21768 0.172 0 1 + 52087 24119 34625 34646 50960 50960 0.10746345356551501 VRVQLGFI 8 Unmodified _VRVQLGFI_ 0 0 0 MER4E1_dup202|chr3:141941172-141941730:+|1.118986753019194|0.0356289563194822|4.97|477.0|21|1|anti-sense MER4E1_dup202|chr3:141941172-141941730:+|1.118986753019194|0.0356289563194822|4.97|477.0|21|1|anti-sense MER4E1_dup202|chr3:141941172-141941730:+|1.118986753019194|0.0356289563194822|4.97|477.0|21|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.19586181640625 3 311.195639 930.565087 NaN NaN NaN NaN NaN NaN NaN 175.82 1 171.03 170.53 171.53 -4.7898 0 0 0 0.21486 1 35948 35948 0 0 1 52088 12132 34626 34647 50961 50961 0.0970267189372862 VRVQWYEWYRL 11 Unmodified _VRVQWYEWYRL_ 0 0 0 REV__ENST00000367558.5_1_1:182572378-182573464:-|nuORF REV__ENST00000367558.5_1_1:182572378-182573464:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2774047851562 3 533.280654 1596.82013 NaN NaN NaN NaN NaN NaN NaN 154.11 1 148.89 148.39 149.39 -5.2209 0 0 0 0.22632 1 29876 29876 0.58532 0.58532 1 + 52089 20924 34627 34648 50962 50962 0.04559488571271686 VRVRGSLLL 9 Unmodified _VRVRGSLLL_ 0 0 0 REV__nc|ENSG00000121577|Q9HBU9-2|POPDC2 REV__nc|ENSG00000121577|Q9HBU9-2|POPDC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 506.8588562011719 2 506.834926 1011.6553 NaN NaN NaN NaN NaN NaN NaN 10.699 1 10.699 10.199 11.199 0 0 0 0 0.23508 1 1356 1356 0 0 1 + 52090 15661 34628 34649 50963 50963 0.14993721222151635 VRVRGSLLL 9 Unmodified _VRVRGSLLL_ 0 0 0 REV__nc|ENSG00000121577|Q9HBU9-2|POPDC2 REV__nc|ENSG00000121577|Q9HBU9-2|POPDC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 338.22607421875 3 338.225709 1011.6553 NaN NaN NaN NaN NaN NaN NaN 5.5825 1 4.9562 4.4562 5.4562 -0.62626 0 0 0 0.23508 1 311 311 0 0 1 + 52091 15661 34628 34649 50964 50964 0.14993721222151635 VRVRRPLL 8 Unmodified _VRVRRPLL_ 0 0 0 ENST00000414380.1_1_9:130511774-130517187:-|nuORF ENST00000414380.1_1_9:130511774-130517187:-|nuORF ENST00000414380.1_1_9:130511774-130517187:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.90594482421875 3 336.897816 1007.67162 NaN NaN NaN NaN NaN NaN NaN 9.8252 1 9.8252 9.3252 10.325 0 0 0 0 0.21486 1 1178 1178 0 0 1 52092 9600 34629 34650 50965 50965 0.16808847178901942 VRVVVQRVY 9 Unmodified _VRVVVQRVY_ 0 0 0 KIAA0146-ANK1|4|fusion;KIAA0146-ANK1|1|fusion;KIAA0146-ANK1|2|fusion;KIAA0146-ANK1|3|fusion;KIAA0146-ANK1|5|fusion;ENST00000521214.5_1_8:48191985-48612988:+|nuORF;nc|ENSG00000164808|Q14159-3|SPIDR;ENST00000524141.5_1_8:48173550-48625457:+|nuORF;nc|ENSG00000164808|Q14159-2|SPIDR;ENSG00000164808|ENST00000297423|SPIDR KIAA0146-ANK1|4|fusion;nc|ENSG00000164808|Q14159-3|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 373.2217102050781 3 373.232864 1116.67676 NaN NaN NaN NaN NaN NaN NaN 75.145 1 75.145 74.645 75.645 0 0 0 0 0.23508 1 14591 14591 1.0715 0.3738 1 52093 12427;11991 34630 34651 50966 50966 0.12309106250859259 VRWLRFWLLFW 11 Unmodified _VRWLRFWLLFW_ 0 0 0 ENST00000531894.5_1_16:70011782-70023933:-|nuORF ENST00000531894.5_1_16:70011782-70023933:-|nuORF ENST00000531894.5_1_16:70011782-70023933:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.26708984375 3 541.309996 1620.90816 NaN NaN NaN NaN NaN NaN NaN 154.79 1 150.01 149.51 150.51 -4.7791 0 0 0 0.22632 1 30768 30768 0.00056442 0.00056442 1 52094 10974 34631 34652 50967 50967 0.12254153952540037 VRWLRFWLLFW 11 Unmodified _VRWLRFWLLFW_ 0 0 0 ENST00000531894.5_1_16:70011782-70023933:-|nuORF ENST00000531894.5_1_16:70011782-70023933:-|nuORF ENST00000531894.5_1_16:70011782-70023933:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3799438476562 2 811.461356 1620.90816 NaN NaN NaN NaN NaN NaN NaN 164.13 1 159.07 158.57 159.57 -5.0648 0 0 0 0.23698 1 31987 31987 0.30703 0.071187 1 52095 10974 34631 34652 50968 50968 0.12254153952540037 VRYRRKFKRT 10 Unmodified _VRYRRKFKRT_ 0 0 0 SPANXD|p.N58K|1|0.71|ENSG00000196406|chrX:141697585-141697585|G/T|missense_variant SPANXD|p.N58K|1|0.71|ENSG00000196406|chrX:141697585-141697585|G/T|missense_variant SPANXD|p.N58K|1|0.71|ENSG00000196406|chrX:141697585-141697585|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 470.6246032714844 3 470.624866 1408.85277 NaN NaN NaN NaN NaN NaN NaN 147.53 1 142.47 141.97 142.97 -5.0595 0 0 0 2.8426 1 28562 28562 3.8763 0.80407 1 52096 25775 34632 34653 50969 50969 0.1646974048476295 VSAAARSGM 9 Unmodified _VSAAARSGM_ 0 0 0 REV__ENSG00000151287|ENST00000376032|TEX30 REV__ENSG00000151287|ENST00000376032|TEX30 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.23870849609375 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 72.35 1 69.039 68.539 69.539 -3.3107 0 0 0 0.22251 1 14099 14099 16.942 2.3606 1 + 52097 17056 34633 34654 50970 50970 -0.012835877025963782 VSAADTPD 8 Unmodified _VSAADTPD_ 0 0 0 nc|ENSG00000120318|Q8WWN8-2|ARAP3;ENSG00000120318|ENST00000239440|ARAP3 nc|ENSG00000120318|Q8WWN8-2|ARAP3 nc|ENSG00000120318|Q8WWN8-2|ARAP3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7153015136719 2 388.177058 774.339563 NaN NaN NaN NaN NaN NaN NaN 89.198 1 85.448 84.948 85.948 -3.7501 0 0 0 0.22934 1 17080 17080 0.62683 0.50396 1 52098 3126 34634 34655 50971 50971 -0.05663322087002598 VSAAENIIS 9 Unmodified _VSAAENIIS_ 0 0 0 tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1 tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1 tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.747314453125 2 452.242732 902.470912 -0.15127 -6.8412E-05 -0.41931 -0.00018963 -0.57059 -0.00025804 452.24269029067585 79.49 3.0015 75.814 75.267 78.268 -3.676 250 85 5 0 0 0 0.11032 1 15105 15105 52.268 1.4133 1 714570000 52099 26340 34635 34656 50972 50972 0.0157748828091826 VSAAPDLKQ 9 Unmodified _VSAAPDLKQ_ 0 0 0 REV__MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant REV__MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2589416503906 2 464.758549 927.502546 0.21055 9.7856E-05 -0.55571 -0.00025827 -0.34515 -0.00016041 464.7584018754502 88.854 0.5638 85.104 84.844 85.408 -3.7501 23 15 2 0 0 0 0.46541 1 16981 16981 21.747 2.4897 1 736110 + 52100 13411 34636 34657 50973 50973 0.035894810348509054 VSAATVSD 8 Unmodified _VSAATVSD_ 0 0 0 ENST00000457358.6_1_7:79765204-79765375:+|nuORF ENST00000457358.6_1_7:79765204-79765375:+|nuORF ENST00000457358.6_1_7:79765204-79765375:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.20574951171875 2 375.187426 748.360298 NaN NaN NaN NaN NaN NaN NaN 78.603 1 75.14 74.64 75.64 -3.4633 0 0 0 0.21486 1 15348 15348 12.532 0 1 52101 10037 34637 34658 50974 50974 -0.023947317073407248 VSACMGPG 8 Unmodified _VSACMGPG_ 0 0 0 REV__ENST00000418393.1_1_17:39077716-39084842:+|nuORF REV__ENST00000418393.1_1_17:39077716-39084842:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.131103515625 2 361.154017 720.293481 NaN NaN NaN NaN NaN NaN NaN 48.702 1 45.833 45.333 46.333 -2.869 0 0 0 0.22934 1 9216 9216 0.62683 0.56284 1 + 52102 21484 34638 34659 50975 50975 -0.07785381794428758 VSACPLSPWY 10 Unmodified _VSACPLSPWY_ 0 0 0 ENST00000382252.5_1_7:6695000-6695141:+|nuORF ENST00000382252.5_1_7:6695000-6695141:+|nuORF ENST00000382252.5_1_7:6695000-6695141:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2204895019531 3 374.847799 1121.52157 0.62035 0.00023254 -0.52361 -0.00019628 0.096737 3.6262E-05 374.8475420464996 27.975 0.49067 26.019 25.735 26.226 -1.9561 22 13 2 0 0 0 0.74977 1 4996 4996 5.7834 0.48655 1 802480 52103 9340 34639 34660 50976 50976 -0.034333056657260386 VSADAPKQL 9 Unmodified _VSADAPKQL_ 0 0 0 REV__ENST00000544989.1_1_2:240274529-240322701:-|nuORF REV__ENST00000544989.1_1_2:240274529-240322701:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2570495605469 2 464.758549 927.502546 0.18271 8.4917E-05 -0.721 -0.00033509 -0.53829 -0.00025017 464.7582227466376 28.687 0.5273 28.687 28.387 28.914 0 25 14 2 0 0 0 0.62102 1 5150 5150 11.64 0 1 2266600 + 52104 20751 34640 34661 50977 50977 0.03589481034839537 VSADERLIY 9 Unmodified _VSADERLIY_ 0 0 0 ENST00000431957.1_1_7:126935711-126936140:+|nuORF ENST00000431957.1_1_7:126935711-126936140:+|nuORF ENST00000431957.1_1_7:126935711-126936140:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2817993164062 2 533.282389 1064.55022 0.50475 0.00026918 -0.50534 -0.00026949 -0.00058322 -3.1102E-07 533.2826027401462 114.19 0.23812 109.64 109.52 109.76 -4.555 9 6 2 0 0 0 0.60061 1 21922 21922 13.042 0.80181 1 918570 52105 9791 34641 34662 50978 50978 0.020531352350417365 VSAEPPHH 8 Unmodified _VSAEPPHH_ 0 0 0 REV__nc|ENSG00000168056|Q9NS15-2|LTBP3;REV__ENSG00000119681|ENST00000261978|LTBP2 REV__nc|ENSG00000168056|Q9NS15-2|LTBP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21649169921875 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 120.31 1 115.79 115.29 116.29 -4.5221 0 0 0 0.19492 1 23722 23722 26.341 0 1 + 52106 17993;15588 34642 34663 50979 50979 -0.027245144849530334 VSAEPPHH 8 Unmodified _VSAEPPHH_ 0 0 0 REV__nc|ENSG00000168056|Q9NS15-2|LTBP3;REV__ENSG00000119681|ENST00000261978|LTBP2 REV__nc|ENSG00000168056|Q9NS15-2|LTBP3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2166442871094 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 120.3 1 115.66 115.16 116.16 -4.645 0 0 0 0.2074 1 23091 23091 19.439 1.304 1 + 52107 17993;15588 34642 34663 50980 50980 -0.027245144849530334 VSAERELSA 9 Unmodified _VSAERELSA_ 0 0 0 REV__nc|ENSG00000122970|Q8WYA0-3|IFT81 REV__nc|ENSG00000122970|Q8WYA0-3|IFT81 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2513427734375 2 481.251089 960.487624 0.039169 1.885E-05 0.39218 0.00018874 0.43135 0.00020759 481.25128374491516 28.412 0.38094 28.412 28.18 28.561 0 15 10 2 0 0 0 0.42844 1 5072 5072 24.021 0 1 1101900 + 52108 15712 34643 34664 50981 50981 0.005799891668630153 VSAERELSA 9 Unmodified _VSAERELSA_ 0 0 0 REV__nc|ENSG00000122970|Q8WYA0-3|IFT81 REV__nc|ENSG00000122970|Q8WYA0-3|IFT81 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2509460449219 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 30.41 1 28.293 27.793 28.793 -2.1167 0 0 0 0.12123 1 5491 5491 34.402 0 1 + 52109 15712 34643 34664 50982 50982 0.005799891668630153 VSAGFVLG 8 Unmodified _VSAGFVLG_ 0 0 0 REV__ENST00000409478.5_1_2:136481871-136482048:+|nuORF REV__ENST00000409478.5_1_2:136481871-136482048:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2119445800781 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 43.403 1 40.637 40.137 41.137 -2.7661 0 0 0 0.23366 1 7837 7837 0.12286 0 1 + 52110 21413 34644 34665 50983 50983 0.02767056777236121 VSAGLIMFIM 10 Unmodified _VSAGLIMFIM_ 0 0 0 REV__ENSG00000205090|ENST00000378733|TMEM240 REV__ENSG00000205090|ENST00000378733|TMEM240 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2626342773438 2 541.292856 1080.57116 NaN NaN NaN NaN NaN NaN NaN 151.55 1 151.55 151.05 152.05 0 0 0 0 0.22576 1 30349 30349 14.838 3.198 1 + 52111 19579 34645 34666 50984 50984 0.03409686018699176 VSALASVQ 8 Unmodified _VSALASVQ_ 0 0 0 REV__ENST00000413670.2_1_1:98510427-98510946:-|nuORF REV__ENST00000413670.2_1_1:98510427-98510946:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7215881347656 2 387.721436 773.428318 -0.28554 -0.00011071 0.39557 0.00015337 0.11003 4.2662E-05 387.7215406669897 71.24 0.70171 67.773 67.486 68.187 -3.467 33 19 2 0 0 0 8448 1 13461 13461 1.4551 0 1 1703700 + 52112 21441 34646 34667 50985 50985 0.032541379433382644 VSALLLGV 8 Unmodified _VSALLLGV_ 0 0 0 REV__ENSG00000185052|ENST00000328041|SLC24A3 REV__ENSG00000185052|ENST00000328041|SLC24A3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 386.51837158203125 2 386.252372 770.49019 -0.79126 -0.00030563 0.98988 0.00038234 0.19862 7.6718E-05 386.2527353690432 25.317 0.31299 23.463 23.292 23.605 -1.8534 11 8 2 0 0 0 8448 1 4151 4151 6.2058 0 1 384210 + 52113 18937 34647 34668 50986 50986 0.09576489362484608 VSALWQLY 8 Unmodified _VSALWQLY_ 0 0 0 POLR2B|p.K211Rfs*66|1|0.1|ENSG00000047315|chr4:56995302-56995302|A/-|frameshift_variant POLR2B|p.K211Rfs*66|1|0.1|ENSG00000047315|chr4:56995302-56995302|A/-|frameshift_variant POLR2B|p.K211Rfs*66|1|0.1|ENSG00000047315|chr4:56995302-56995302|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26416015625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 61.031 1 57.661 57.161 58.161 -3.3694 0 0 0 0.2074 1 11372 11372 19.439 3.5918 1 52114 12811 34648 34669 50987 50987 0.027349729028514957 VSAMLWAQ 8 Unmodified _VSAMLWAQ_ 0 0 0 ENST00000553142.5_1_12:58019947-58020121:-|nuORF ENST00000553142.5_1_12:58019947-58020121:-|nuORF ENST00000553142.5_1_12:58019947-58020121:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7525634765625 2 453.231113 904.447674 -0.0075831 -3.4369E-06 2.1226 0.00096205 2.1151 0.00095861 453.23227961885493 41.745 0.58761 39.139 38.772 39.36 -2.606 18 16 2 0 0 0 0.97173 1 7433 7433 12.532 0 1 450640 52115 11204 34649 34670 50988 50988 -0.008372290374040858 VSAPGRWT 8 Unmodified _VSAPGRWT_ 0 0 0 REV__ENST00000553582.5_1_14:68129224-68156858:-|nuORF REV__ENST00000553582.5_1_14:68129224-68156858:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.23004150390625 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 40.991 1 38.356 37.856 38.856 -2.6348 0 0 0 0.22847 1 7647 7647 10.074 0 1 + 52116 22964 34650 34671 50989 50989 0.009123624117478357 VSAPLTNLN 9 Unmodified _VSAPLTNLN_ 0 0 0 REV__ENSG00000164342|ENST00000296795|TLR3 REV__ENSG00000164342|ENST00000296795|TLR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2594299316406 2 464.758549 927.502546 0.28911 0.00013437 -0.92518 -0.00042999 -0.63607 -0.00029562 464.75811833437945 30.345 0.49264 28.453 28.134 28.627 -1.8928 28 13 3 0 0 0 0.57447 1 5213 5213 14.838 0 1 1537000 + 52117 17677 34651 34672 50990 50990 0.035894810348509054 VSAPLTNLN 9 Unmodified _VSAPLTNLN_ 0 0 0 REV__ENSG00000164342|ENST00000296795|TLR3 REV__ENSG00000164342|ENST00000296795|TLR3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2594299316406 2 464.758549 927.502546 0.53973 0.00025084 -1.2184 -0.00056627 -0.67868 -0.00031542 464.7579402096198 30.47 0.53028 28.395 28.146 28.677 -2.0743 31 14 3 0 0 0 0.57447 1 5245 5245 14.838 0 1 1383500 + 52118 17677 34651 34672 50991 50991 0.035894810348509054 VSAPLTNLN 9 Unmodified _VSAPLTNLN_ 0 0 0 REV__ENSG00000164342|ENST00000296795|TLR3 REV__ENSG00000164342|ENST00000296795|TLR3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.758549 927.502546 0.39827 0.0001851 -1.3605 -0.00063232 -0.96225 -0.00044722 464.75803402541936 30.442 0.59722 28.326 28.048 28.645 -2.1167 -0.13943 -0.00024691 NaN 14.838 31 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1268400 + 52119 17677 34651 34672 0.035894810348509054 VSAQITDLN 9 Unmodified _VSAQITDLN_ 0 0 0 tr|U7T2J8|U7T2J8_FUSNUinorganicdiphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00474PE=4SV=1 tr|U7T2J8|U7T2J8_FUSNUinorganicdiphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00474PE=4SV=1 tr|U7T2J8|U7T2J8_FUSNUinorganicdiphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00474PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2471008300781 2 480.753464 959.492375 -0.00046528 -2.2369E-07 -0.086036 -4.1362E-05 -0.086502 -4.1586E-05 480.7533830765266 23.913 0.31087 22.379 22.159 22.47 -1.5342 14 8 2 0 0 0 0.6329 1 3842 3842 10.824 0 1 1533600 52120 26368 34652 34673 50992 50992 0.011008733096105061 VSASAAGRM 9 Unmodified _VSASAAGRM_ 0 0 0 REV__nc|ENSG00000196867|Q8NHY6-2|ZFP28 REV__nc|ENSG00000196867|Q8NHY6-2|ZFP28 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2384033203125 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 72.787 1 69.249 68.749 69.749 -3.5385 0 0 0 0.16428 1 13802 13802 28.487 0 1 + 52121 19285 34653 34674 50993 50993 -0.012835877025963782 VSASAVGIQP 10 Unmodified _VSASAVGIQP_ 0 0 0 tr|U7T2P2|U7T2P2_FUSNU3-oxoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00519PE=4SV=1 tr|U7T2P2|U7T2P2_FUSNU3-oxoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00519PE=4SV=1 tr|U7T2P2|U7T2P2_FUSNU3-oxoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00519PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2592468261719 2 464.758549 927.502546 0.36473 0.00016951 -0.68822 -0.00031986 -0.32349 -0.00015034 464.75819525167924 28.719 0.41738 26.723 26.519 26.936 -1.9962 19 11 2 0 0 0 0.59928 1 4880 4880 19.257 2.1441 1 774320 52122 26373 34654 34675 50994 50994 0.03589481034862274 VSASEGLAVP 10 Unmodified _VSASEGLAVP_ 0 0 0 REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2503356933594 2 465.250557 928.486562 0.41222 0.00019178 0.38683 0.00017997 0.79904 0.00037176 465.2505814186107 33.379 0.51292 31.163 30.84 31.353 -2.2158 22 14 2 0 0 0 0.32088 1 5783 5783 36.127 3.8215 1 735090 + 52123 18825 34655 34676 50995 50995 0.01945774797957256 VSASFIIIL 9 Unmodified _VSASFIIIL_ 0 0 0 REV__ENST00000412485.1_1_X:13284980-13285373:-|nuORF REV__ENST00000412485.1_1_X:13284980-13285373:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2434997558594 2 481.799686 961.584819 0.08249 3.9744E-05 0.41509 0.00019999 0.49758 0.00023974 481.7998600886053 64.114 0.48588 61.116 60.839 61.325 -2.9975 20 13 2 0 0 0 0.79204 1 12357 12357 7.2892 0 1 1674400 + 52124 21434 34656 34677 50996 50996 0.10249003113824529 VSASLLDGPG 10 Unmodified _VSASLLDGPG_ 0 0 0 ENST00000528624.5_1_1:26146700-26149787:+|nuORF;ENST00000525713.5_3_1:26146700-26150235:+|nuORF ENST00000528624.5_1_1:26146700-26149787:+|nuORF ENST00000528624.5_1_1:26146700-26149787:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2485656738281 2 458.242732 914.470912 0.28314 0.00012975 0.26822 0.00012291 0.55135 0.00025265 458.24283143633727 30.194 1.8549 28.301 27.651 29.506 -1.8928 165 52 5 0 0 0 0.61964 2 5124 5124;5172 18.146 4.2403 1 75773000 52125 10901 34657 34678 50997;50998 50997 0.010254882809135779 VSATSTTPVP 10 Unmodified _VSATSTTPVP_ 0 0 0 REV__ENSG00000215182|ENST00000621226|MUC5AC REV__ENSG00000215182|ENST00000621226|MUC5AC MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7780456542969 2 480.25584 958.497126 -0.028374 -1.3627E-05 -0.019293 -9.2655E-06 -0.047667 -2.2892E-05 480.25581326828075 33.92 0.83855 33.92 33.474 34.312 0 81 23 4 0 0 0 0.5575 1 6244 6244 21.537 2.28 1 112050000 + 52126 19683 34658 34679 50999 50999 0.016217574523807343 VSATSTTPVP 10 Unmodified _VSATSTTPVP_ 0 0 0 REV__ENSG00000215182|ENST00000621226|MUC5AC REV__ENSG00000215182|ENST00000621226|MUC5AC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77520751953125 2 480.25584 958.497126 0.24858 0.00011938 -0.37003 -0.00017771 -0.12145 -5.8328E-05 480.25566523642664 36.031 0.94894 33.755 33.281 34.23 -2.2766 103 26 5 0 0 0 0.34654 1 6348 6348 34.402 5.3201 1 98017000 + 52127 19683 34658 34679 51000 51000 0.016217574523807343 VSAVEAQSL 9 Unmodified _VSAVEAQSL_ 0 0 0 REV__ENSG00000166788|ENST00000524803|SAAL1 REV__ENSG00000166788|ENST00000524803|SAAL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7472839355469 2 452.242732 902.470912 0.44156 0.00019969 -0.87638 -0.00039634 -0.43482 -0.00019664 452.24246166082594 75.801 2.3923 75.801 75.31 77.702 0 199 68 6 0 0 0 0.15214 1 14689 14689 43.858 0 1 841180000 + 52128 17870 34659 34680 51001 51001 0.0157748828091826 VSAVEVATEG 10 Unmodified _VSAVEVATEG_ 0 0 0 ENST00000601064.1_1_19:58193384-58196640:+|nuORF;ENST00000599402.1_1_19:58193384-58197878:+|nuORF ENST00000601064.1_1_19:58193384-58196640:+|nuORF ENST00000601064.1_1_19:58193384-58196640:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2430725097656 2 481.245472 960.476391 NaN NaN NaN NaN NaN NaN NaN 104.33 1 100.28 99.779 100.78 -4.0543 0 0 0 2.8426 1 20063 20063 14.405 2.1647 1 52129 11692 34660 34681 51002 51002 -0.005428329272717747 VSCCCCCYY 9 Unmodified _VSCCCCCYY_ 0 0 0 ENST00000307851.8_1_5:156533808-156536017:-|nuORF ENST00000307851.8_1_5:156533808-156536017:-|nuORF ENST00000307851.8_1_5:156533808-156536017:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.682861328125 2 523.64907 1045.28359 NaN NaN NaN NaN NaN NaN NaN 115.27 1 110.8 110.3 111.3 -4.4726 0 0 0 0.19624 1 22721 22721 0.073264 0 1 52130 8619 34661 34682 51003 51003 -0.23724397177988976 VSCFLAPH 8 Unmodified _VSCFLAPH_ 0 0 0 REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2169494628906 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 87.011 1 83.284 82.784 83.784 -3.727 0 0 0 0.21323 1 17011 17011 14.582 0 1 + 52131 24825 34662 34683 51004 51004 -0.01985498208887293 VSCFLAPH 8 Unmodified _VSCFLAPH_ 0 0 0 REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21710205078125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 122.05 1 117.5 117 118 -4.5476 0 0 0 0.21486 1 24056 24056 9.3474 4.1168 1 + 52132 24825 34662 34683 51005 51005 -0.01985498208887293 VSCFLAPH 8 Unmodified _VSCFLAPH_ 0 0 0 REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.228515625 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 75.042 1 71.319 70.819 71.819 -3.7227 0 0 0 0.23366 1 14187 14187 0.12286 0 1 + 52133 24825 34662 34683 51006 51006 -0.01985498208887293 VSCFLAPH 8 Unmodified _VSCFLAPH_ 0 0 0 REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21905517578125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 63.671 1 60.414 59.914 60.914 -3.2567 0 0 0 0.23749 1 11949 11949 0.0082765 0 1 + 52134 24825 34662 34683 51007 51007 -0.01985498208887293 VSCFLAPH 8 Unmodified _VSCFLAPH_ 0 0 0 REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.219482421875 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 70.639 1 67.172 66.672 67.672 -3.467 0 0 0 0.23366 1 13379 13379 0.12286 0 1 + 52135 24825 34662 34683 51008 51008 -0.01985498208887293 VSCFLAPH 8 Unmodified _VSCFLAPH_ 0 0 0 REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2161865234375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 86.716 1 82.987 82.487 83.487 -3.7289 0 0 0 0.21323 1 16585 16585 14.582 5.2343 1 + 52136 24825 34662 34683 51009 51009 -0.01985498208887293 VSCFLAPH 8 Unmodified _VSCFLAPH_ 0 0 0 REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2278747558594 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 86.898 1 83.169 82.669 83.669 -3.7289 0 0 0 0.22666 1 16622 16622 0.62683 0 1 + 52137 24825 34662 34683 51010 51010 -0.01985498208887293 VSCFLAPH 8 Unmodified _VSCFLAPH_ 0 0 0 REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21673583984375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 87.001 1 83.272 82.772 83.772 -3.7289 0 0 0 0.20568 1 16643 16643 20.871 8.3397 1 + 52138 24825 34662 34683 51011 51011 -0.01985498208887293 VSCFLAPH 8 Unmodified _VSCFLAPH_ 0 0 0 REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2162780761719 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 95.015 1 91.134 90.634 91.634 -3.881 0 0 0 0.21486 1 18231 18231 9.3474 1.4373 1 + 52139 24825 34662 34683 51012 51012 -0.01985498208887293 VSCFLAPH 8 Unmodified _VSCFLAPH_ 0 0 0 REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant REV__TNFAIP3|p.P457Lfs*20|1|0.49|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21697998046875 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 119.94 1 115.48 114.98 115.98 -4.467 0 0 0 0.21486 1 23089 23089 9.3474 3.587 1 + 52140 24825 34662 34683 51013 51013 -0.01985498208887293 VSDDPQVL 8 Unmodified _VSDDPQVL_ 0 0 0 ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF ENSG00000047249|ENST00000359530|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22320556640625 2 436.721633 871.428712 -0.17157 -7.4929E-05 0.070055 3.0595E-05 -0.10152 -4.4335E-05 436.7216607012094 68.054 0.74099 68.054 67.583 68.324 0 32 20 2 0 0 0 0.0942 3 13133 13088;13102;13133 64.236 22.142 1 3693400 52141 1213 34663 34684 51014;51015;51016 51016 -0.01214487127481334 VSDDPQVL 8 Unmodified _VSDDPQVL_ 0 0 0 ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF ENSG00000047249|ENST00000359530|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2223815917969 2 436.721633 871.428712 -0.26104 -0.000114 0.16365 7.1468E-05 -0.097394 -4.2534E-05 436.7216725483846 71.294 0.8134 68.044 67.601 68.414 -3.2492 46 22 3 0 0 0 0.08026 1 13904 13904 74.423 32.328 1 7595800 52142 1213 34663 34684 51017 51017 -0.01214487127481334 VSDDPQVL 8 Unmodified _VSDDPQVL_ 0 0 0 ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF ENSG00000047249|ENST00000359530|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2236633300781 2 436.721633 871.428712 0.27767 0.00012127 -0.24032 -0.00010495 0.03735 1.6312E-05 436.72148551440534 71.671 0.67239 68.043 67.629 68.301 -3.6275 33 18 2 0 0 0 0.060254 1 13510 13510 85.357 34.502 1 3047300 52143 1213 34663 34684 51018 51018 -0.01214487127481334 VSDDPQVL 8 Unmodified _VSDDPQVL_ 0 0 0 ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF ENSG00000047249|ENST00000359530|ATP6V1H ENSG00000047249|ENST00000359530|ATP6V1H MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2230529785156 2 436.721633 871.428712 0.17712 7.7352E-05 -0.11989 -5.2359E-05 0.05723 2.4993E-05 436.721536746534 71.539 0.77354 68.072 67.696 68.469 -3.467 46 21 3 0 0 0 0.08026 4 13549 13508;13549;13601;13617 74.423 32.328 1 4469200 52144 1213 34663 34684 51019;51020;51021;51022 51020 -0.01214487127481334 VSDEKKLY 8 Unmodified _VSDEKKLY_ 0 0 0 REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.7701721191406 2 491.266207 980.517862 0.10367 5.0929E-05 0.20757 0.00010197 0.31124 0.0001529 491.2662186373873 132.29 0.87096 127.44 126.94 127.81 -4.8527 53 24 3 0 0 0 0.10877 1 25459 25459 9.544 3.3521 1 7524400 + 52145 12880 34664 34685 51023 51023 0.02682347832035248 VSDEKKLY 8 Unmodified _VSDEKKLY_ 0 0 0 REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 491.266207 980.517862 0.18751 9.2118E-05 0.092473 4.5429E-05 0.27998 0.00013755 491.26614715096787 127.25 0.72838 127.25 126.85 127.58 0 -0.088432 -8.9278E-06 NaN 9.544 49 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6818200 + 52146 12880 34664 34685 0.02682347832035248 VSDEKKLY 8 Unmodified _VSDEKKLY_ 0 0 0 REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 491.266207 980.517862 0.082575 4.0566E-05 -0.55233 -0.00027134 -0.46976 -0.00023078 491.266140571083 132 0.77005 127.36 126.92 127.69 -4.6399 0.021621 -0.00064247 NaN 9.544 53 21 3 NaN NaN NaN NaN 0 NaN NaN 0 9398100 + 52147 12880 34664 34685 0.02682347832035248 VSDEKKLY 8 Unmodified _VSDEKKLY_ 0 0 0 REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 491.266207 980.517862 -0.040582 -1.9937E-05 0.26925 0.00013227 0.22866 0.00011233 491.2662426897782 132.1 0.85422 127.3 126.9 127.76 -4.799 -0.033009 0.00016476 NaN 9.544 53 24 3 NaN NaN NaN NaN 0 NaN NaN 0 7447200 + 52148 12880 34664 34685 0.02682347832035248 VSDELVQQY 9 Unmodified _VSDELVQQY_ 0 0 0 ENSG00000108510|ENST00000397786|MED13;MED13|p.H726Tfs*9|1|0.29|ENSG00000108510|chr17:61995157-61995158|-/T|frameshift_variant ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2659301757812 2 540.764029 1079.5135 0.54685 0.00029572 -0.65065 -0.00035185 -0.1038 -5.6132E-05 540.763552589243 82.173 0.85268 82.173 81.716 82.568 0 42 19 3 0 0 0 0.19311 2 16053 16011;16053 37.974 18.717 1 4583900 52149 2479 34665 34686 51024;51025 51025 -0.023071613815318415 VSDELVQQY 9 Unmodified _VSDELVQQY_ 0 0 0 ENSG00000108510|ENST00000397786|MED13;MED13|p.H726Tfs*9|1|0.29|ENSG00000108510|chr17:61995157-61995158|-/T|frameshift_variant ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2657470703125 2 540.764029 1079.5135 0.14625 7.9085E-05 -0.2571 -0.00013903 -0.11085 -5.9944E-05 540.7638075373944 86.224 0.57742 82.497 82.224 82.802 -3.727 28 15 2 0 0 0 0.019872 1 16864 16864 92.491 29.919 1 6879300 52150 2479 34665 34686 51026 51026 -0.023071613815318415 VSDELVQQY 9 Unmodified _VSDELVQQY_ 0 0 0 ENSG00000108510|ENST00000397786|MED13;MED13|p.H726Tfs*9|1|0.29|ENSG00000108510|chr17:61995157-61995158|-/T|frameshift_variant ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2652587890625 2 540.764029 1079.5135 0.35375 0.0001913 -0.61806 -0.00033422 -0.26431 -0.00014293 540.7636607161813 86.441 0.52879 82.49 82.225 82.754 -3.9503 28 14 2 0 0 0 0.019872 1 16473 16473 92.491 40.223 1 6351200 52151 2479 34665 34686 51027 51027 -0.023071613815318415 VSDELVQQY 9 Unmodified _VSDELVQQY_ 0 0 0 ENSG00000108510|ENST00000397786|MED13;MED13|p.H726Tfs*9|1|0.29|ENSG00000108510|chr17:61995157-61995158|-/T|frameshift_variant ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2657470703125 2 540.764029 1079.5135 0.15704 8.492E-05 -0.37607 -0.00020337 -0.21903 -0.00011844 540.7637752656127 86.183 0.62852 82.454 82.171 82.8 -3.7289 32 17 2 0 0 0 0.010349 3 16492 16443;16483;16492 103.75 35.668 1 8481300 52152 2479 34665 34686 51028;51029;51030 51030 -0.023071613815318415 VSDFGMARY 9 Unmodified _VSDFGMARY_ 0 0 0 ENSG00000135605|ENST00000381501|TEC ENSG00000135605|ENST00000381501|TEC ENSG00000135605|ENST00000381501|TEC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6889038085938 2 523.242209 1044.46987 0.25805 0.00013502 -2.0728 -0.0010846 -1.8148 -0.00094957 523.240971250289 88.531 0.5632 84.78 84.673 85.237 -3.7501 17 15 2 0 0 0 0.18865 1 16956 16956 49.933 8.0934 1 1459000 52153 3938 34666 34687 51031 51031 -0.05059049359647361 VSDFRKEFY 9 Unmodified _VSDFRKEFY_ 0 0 0 ENST00000491520.5_1_22:19467485-19467677:+|nuORF;CDC45|p.W55Gfs*21|1|0.32|ENSG00000093009|chr22:19481001-19481001|G/-|frameshift_variant;nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45 ENST00000491520.5_1_22:19467485-19467677:+|nuORF ENST00000491520.5_1_22:19467485-19467677:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 397.19732666015625 3 397.532868 1189.57677 -0.20528 -8.1604E-05 0.21494 8.5446E-05 0.0096662 3.8426E-06 397.53286668466666 82.861 0.73347 79.254 78.849 79.582 -3.6079 63 20 4 0 0 0 0.47592 1 16256 16256 17.113 14.482 1 9654700 52154 454 34667 34688 51032 51032 -0.010431758736103802 VSDFRKEFY 9 Unmodified _VSDFRKEFY_ 0 0 0 ENST00000491520.5_1_22:19467485-19467677:+|nuORF;CDC45|p.W55Gfs*21|1|0.32|ENSG00000093009|chr22:19481001-19481001|G/-|frameshift_variant;nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45 ENST00000491520.5_1_22:19467485-19467677:+|nuORF ENST00000491520.5_1_22:19467485-19467677:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 397.532868 1189.57677 0.39005 0.00015506 -0.45987 -0.00018281 -0.069814 -2.7753E-05 397.5326240884533 79.135 0.72887 79.135 78.715 79.444 0 -0.039105 -0.0005782 NaN 17.113 62 20 4 NaN NaN NaN NaN 0 NaN NaN 0 9307600 52155 454 34667 34688 -0.010431758736103802 VSDFRKEFY 9 Unmodified _VSDFRKEFY_ 0 0 0 ENST00000491520.5_1_22:19467485-19467677:+|nuORF;CDC45|p.W55Gfs*21|1|0.32|ENSG00000093009|chr22:19481001-19481001|G/-|frameshift_variant;nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45 ENST00000491520.5_1_22:19467485-19467677:+|nuORF ENST00000491520.5_1_22:19467485-19467677:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 397.532868 1189.57677 0.088646 3.524E-05 -0.10089 -4.0107E-05 -0.012244 -4.8673E-06 397.5327560698661 83.069 0.72028 79.196 78.814 79.534 -3.8736 0.021382 -0.00015008 NaN 17.113 61 20 4 NaN NaN NaN NaN 0 NaN NaN 0 9574300 52156 454 34667 34688 -0.010431758736103802 VSDFRKEFY 9 Unmodified _VSDFRKEFY_ 0 0 0 ENST00000491520.5_1_22:19467485-19467677:+|nuORF;CDC45|p.W55Gfs*21|1|0.32|ENSG00000093009|chr22:19481001-19481001|G/-|frameshift_variant;nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45 ENST00000491520.5_1_22:19467485-19467677:+|nuORF ENST00000491520.5_1_22:19467485-19467677:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 397.532868 1189.57677 -0.66334 -0.0002637 0.59745 0.00023751 -0.065887 -2.6192E-05 397.5330315531794 82.812 0.6878 79.113 78.833 79.521 -3.6985 -0.06136 0.00068276 NaN 17.113 64 19 4 NaN NaN NaN NaN 0 NaN NaN 0 9802500 52157 454 34667 34688 -0.010431758736103802 VSDGEDEESD 10 Unmodified _VSDGEDEESD_ 0 0 0 ENSG00000099381|ENST00000262519|SETD1A;SETD1A|p.L1157Pfs*90|1|0.25|ENSG00000099381|chr16:30979250-30979251|-/C|frameshift_variant;SETD1A|p.S1128Vfs*134|2|0.19|ENSG00000099381|chr16:30979162-30979162|C/-|frameshift_variant ENSG00000099381|ENST00000262519|SETD1A ENSG00000099381|ENST00000262519|SETD1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2688598632812 2 541.19383 1080.37311 0.2862 0.00015489 -0.13069 -7.0728E-05 0.15551 8.4162E-05 541.1950482955991 133.5 0.28671 128.68 128.52 128.81 -4.8175 12 7 3 0 0 0 1.1335 1 25705 25705 1.9064 0.1641 1 1298000 52158 1892 34668 34689 51033 51033 -0.16386409896404075 VSDHISKVLY 10 Unmodified _VSDHISKVLY_ 0 0 0 ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B;FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant ENSG00000112584|ENST00000476287|FAM120B ENSG00000112584|ENST00000476287|FAM120B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7203369140625 3 387.548518 1159.62372 -0.42898 -0.00016625 0.13124 5.0864E-05 -0.29774 -0.00011539 387.54842593121003 67.537 0.52766 67.537 67.298 67.826 0 32 14 3 0 0 0 0.80388 1 13061 13061 25.155 18.532 1 3121900 52159 2700 34669 34690 51034 51034 0.05029683677548746 VSDHISKVLY 10 Unmodified _VSDHISKVLY_ 0 0 0 ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B;FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant ENSG00000112584|ENST00000476287|FAM120B ENSG00000112584|ENST00000476287|FAM120B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7207946777344 3 387.548518 1159.62372 -0.32804 -0.00012713 0.26767 0.00010373 -0.060369 -2.3396E-05 387.5485861508711 70.645 0.56061 67.396 67.11 67.67 -3.2492 38 15 3 0 0 0 0.41902 1 13751 13751 31.462 21.698 1 4094500 52160 2700 34669 34690 51035 51035 0.05029683677548746 VSDHISKVLY 10 Unmodified _VSDHISKVLY_ 0 0 0 ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B;FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant ENSG00000112584|ENST00000476287|FAM120B ENSG00000112584|ENST00000476287|FAM120B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7215881347656 3 387.548518 1159.62372 -0.28965 -0.00011226 0.017395 6.7413E-06 -0.27226 -0.00010551 387.5484653690974 70.886 0.6012 67.418 67.166 67.768 -3.467 38 16 3 0 0 0 0.89924 1 13464 13464 9.2438 0 1 3353300 52161 2700 34669 34690 51036 51036 0.05029683677548746 VSDHISKVLY 10 Unmodified _VSDHISKVLY_ 0 0 0 ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B;FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant ENSG00000112584|ENST00000476287|FAM120B ENSG00000112584|ENST00000476287|FAM120B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 387.548518 1159.62372 0.34083 0.00013209 -0.40615 -0.0001574 -0.065322 -2.5315E-05 387.5483467653448 71.032 0.48459 67.452 67.157 67.641 -3.5798 0.0013454 -0.00041333 NaN 31.462 37 13 4 NaN NaN NaN NaN 0 NaN NaN 0 5440200 52162 2700 34669 34690 0.05029683677548746 VSDKTQEQFY 10 Unmodified _VSDKTQEQFY_ 0 0 0 REV__ENSG00000146576|ENST00000344417|INTS15 REV__ENSG00000146576|ENST00000344417|INTS15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7808837890625 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 82.592 1 78.894 78.394 79.394 -3.6985 0 0 0 0.22588 1 15752 15752 6.2058 0.47393 1 + 52163 16894 34670 34691 51037 51037 -0.03996104807015399 VSDLEPHMNY 10 Unmodified _VSDLEPHMNY_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2;EPHA2|p.P460Rfs*33|6|0.23|ENSG00000142627|chr1:16135704-16135704|G/-|frameshift_variant;nc|ENSG00000142627|P29317-2|EPHA2;EPHA2|p.A517Pfs*21|1|0.43|ENSG00000142627|chr1:16135069-16135069|C/-|frameshift_variant ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.284912109375 2 602.768788 1203.52302 0.93043 0.00056084 -1.3081 -0.00078848 -0.37766 -0.00022764 602.7682068595403 87.928 0.28347 84.136 84.018 84.301 -3.7926 10 7 2 0 0 0 0.47611 1 17186 17186 8.7518 8.624 1 1114200 52164 4434 34671 34692 51038 51038 -0.07059716367643887 VSDLEPSTAY 10 Unmodified _VSDLEPSTAY_ 0 0 0 IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant;ENSG00000174498|ENST00000327987|IGDCC3;IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant;IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2584228515625 2 541.256037 1080.49752 0.25711 0.00013916 -0.028368 -1.5354E-05 0.22874 0.00012381 541.2561759889411 34.453 0.31153 32.2 32.012 32.324 -2.2527 11 8 2 0 0 0 0.51199 1 6015 6015 24.021 0 1 632630 52165 6352;11936 34672 34693 51039 51039 -0.039508676184368596 VSDLEPSTAY 10 Unmodified _VSDLEPSTAY_ 0 0 0 IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant;ENSG00000174498|ENST00000327987|IGDCC3;IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant;IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2672729492188 2 541.256037 1080.49752 0.4424 0.00023945 0.49909 0.00027014 0.94149 0.00050959 541.2554401299975 34.533 0.3505 32.317 32.088 32.438 -2.2158 12 9 2 0 0 0 0.40256 1 6037 6037 30.637 0 1 428070 52166 6352;11936 34672 34693 51040 51040 -0.039508676184368596 VSDLEPSTAY 10 Unmodified _VSDLEPSTAY_ 0 0 0 IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant;ENSG00000174498|ENST00000327987|IGDCC3;IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant;IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 541.256037 1080.49752 0.31692 0.00017154 -0.22485 -0.0001217 0.09207 4.9833E-05 541.2560195793059 32.17 0.4166 32.17 31.879 32.296 0 -0.05884 -0.00023976 NaN 30.637 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1048400 52167 6352;11936 34672 34693 -0.039508676184368596 VSDLHEGHFY 10 Unmodified _VSDLHEGHFY_ 0 0 0 nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENSG00000142661|ENST00000374434|MYOM3 nc|ENSG00000142661|Q5VTT5-2|MYOM3 nc|ENSG00000142661|Q5VTT5-2|MYOM3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2754516601562 2 602.275095 1202.53564 NaN NaN NaN NaN NaN NaN NaN 62.708 1 59.746 59.246 60.246 -2.9614 0 0 0 0.21103 1 12102 12102 26.268 10.119 1 52168 4437 34673 34694 51041 51041 -0.057529369130861596 VSDNEEEDK 9 Unmodified _VSDNEEEDK_ 0 0 0 ENST00000580496.1_1_17:61713981-61714308:+|nuORF ENST00000580496.1_1_17:61713981-61714308:+|nuORF ENST00000580496.1_1_17:61713981-61714308:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2634887695312 2 532.722558 1063.43056 -0.026962 -1.4363E-05 -0.72427 -0.00038584 -0.75124 -0.0004002 532.7220648995433 113.95 0.76881 109.5 109.15 109.92 -4.4539 50 21 3 0 0 0 0.66788 1 22437 22437 29.082 9.6426 1 4441400 52169 11496 34674 34695 51042 51042 -0.09861522900200725 VSDPDSGNN 9 Unmodified _VSDPDSGNN_ 0 0 0 ENSG00000272674|ENST00000609684|PCDHB16 ENSG00000272674|ENST00000609684|PCDHB16 ENSG00000272674|ENST00000609684|PCDHB16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 302.04022216796875 3 302.126278 903.357004 NaN NaN NaN NaN NaN NaN NaN 49.078 1 46.197 45.697 46.697 -2.8811 0 0 0 0.23508 1 9294 9294 2.4985 0.84587 1 52170 8006 34675 34696 51043 51043 -0.09854026551988682 VSDPSSPQY 9 Unmodified _VSDPSSPQY_ 0 0 0 ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF;TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1 ENST00000524903.1_1_11:6639992-6640524:-|nuORF ENST00000524903.1_1_11:6639992-6640524:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2723693847656 2 490.221997 978.429441 0.19836 9.7241E-05 -0.21338 -0.0001046 -0.015016 -7.361E-06 490.22184648318034 35.256 0.96564 35.256 34.791 35.757 0 96 27 4 0 0 0 6.9307E-11 1 6516 6516 157.8 82.866 1 54017000 52171 5714 34676 34697 51044 51044 -0.060636924784148505 VSDPSSPQY 9 Unmodified _VSDPSSPQY_ 0 0 0 ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF;TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1 ENST00000524903.1_1_11:6639992-6640524:-|nuORF ENST00000524903.1_1_11:6639992-6640524:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25531005859375 2 490.221997 978.429441 -0.24323 -0.00011924 -0.069515 -3.4078E-05 -0.31275 -0.00015331 490.22192281259174 37.984 0.8671 35.516 35.05 35.917 -2.4688 87 24 4 0 0 0 1.3762E-17 1 7039 7039 171.09 96.157 1 56182000 52172 5714 34676 34697 51045 51045 -0.060636924784148505 VSDPSSPQY 9 Unmodified _VSDPSSPQY_ 0 0 0 ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF;TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1 ENST00000524903.1_1_11:6639992-6640524:-|nuORF ENST00000524903.1_1_11:6639992-6640524:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2546081542969 2 490.221997 978.429441 0.16491 8.0842E-05 -0.38593 -0.00018919 -0.22102 -0.00010835 490.22176260401085 37.91 0.94403 35.468 35.039 35.983 -2.4419 96 26 5 0 0 0 1.0398E-44 1 6736 6736 215.27 140.34 1 50227000 52173 5714 34676 34697 51046 51046 -0.060636924784148505 VSDPSSPQY 9 Unmodified _VSDPSSPQY_ 0 0 0 ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF;TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1 ENST00000524903.1_1_11:6639992-6640524:-|nuORF ENST00000524903.1_1_11:6639992-6640524:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.255126953125 2 490.221997 978.429441 -0.031858 -1.5617E-05 -0.12543 -6.1486E-05 -0.15728 -7.7103E-05 490.2218773748649 37.888 0.96553 35.551 35.086 36.052 -2.3375 96 27 5 0 0 0 1.3230000000000001E-33 1 6715 6715 199.75 124.82 1 45021000 52174 5714 34676 34697 51047 51047 -0.060636924784148505 VSDSCCCC 8 Unmodified _VSDSCCCC_ 0 0 0 REV__ENST00000308086.2_1_12:72057128-72057308:+|nuORF REV__ENST00000308086.2_1_12:72057128-72057308:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.1102294921875 2 410.110635 818.206716 NaN NaN NaN NaN NaN NaN NaN 55.117 1 52.233 51.733 52.733 -2.8837 0 0 0 0.21486 1 10540 10540 0 0 1 + 52175 20460 34677 34698 51048 51048 -0.20965872402814512 VSDSCCCC 8 Unmodified _VSDSCCCC_ 0 0 0 REV__ENST00000308086.2_1_12:72057128-72057308:+|nuORF REV__ENST00000308086.2_1_12:72057128-72057308:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 410.1103210449219 2 410.110635 818.206716 NaN NaN NaN NaN NaN NaN NaN 143.07 1 138.04 137.54 138.54 -5.0261 0 0 0 0.21486 1 27581 27581 0 0 1 + 52176 20460 34677 34698 51049 51049 -0.20965872402814512 VSDVLAEP 8 Unmodified _VSDVLAEP_ 0 0 0 REV__ENSG00000160993|ENST00000292566|ALKBH4 REV__ENSG00000160993|ENST00000292566|ALKBH4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 415.2538146972656 2 415.218726 828.422899 NaN NaN NaN NaN NaN NaN NaN 154.72 1 149.43 148.93 149.93 -5.2854 0 0 0 0.19492 1 30005 30005 26.341 0 1 + 52177 17445 34678 34699 51050 51050 0.0018241436084736051 VSDVLISNQ 9 Unmodified _VSDVLISNQ_ 0 0 0 REV__CCNT2|p.T293A|1|0.24|ENSG00000082258|chr2:134953332-134953332|A/G|missense_variant REV__CCNT2|p.T293A|1|0.24|ENSG00000082258|chr2:134953332-134953332|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2673645019531 2 487.761289 973.508025 0.032678 1.5939E-05 0.1651 8.053E-05 0.19778 9.6469E-05 487.76218728943354 43.13 4.7646 40.411 40.092 44.856 -2.7191 375 135 6 0 0 0 0.42844 1 8075 8075 24.021 4.7636 1 4606900000 + 52178 13311 34679 34700 51051 51051 0.020211598266769215 VSDVSYDRF 9 Unmodified _VSDVSYDRF_ 0 0 0 LILRA1|p.L357*|1|0.29|ENSG00000104974|chr19:54596297-54596297|T/-|frameshift_variant;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;LILRA1|p.N448Kfs*34|1|0.3|ENSG00000104974|chr19:54600538-54600539|-/A|frameshift_variant;LILRA1|p.A451Ffs*34|1|0.05|ENSG00000104974|chr19:54600547-54600548|-/CATTCCAAGG|frameshift_variant;ENSG00000104974|ENST00000251372|LILRA1 LILRA1|p.L357*|1|0.29|ENSG00000104974|chr19:54596297-54596297|T/-|frameshift_variant LILRA1|p.L357*|1|0.29|ENSG00000104974|chr19:54596297-54596297|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7901000976562 2 544.256371 1086.49819 0.22148 0.00012054 0.03927 2.1373E-05 0.26074 0.00014191 544.2562966628798 65.553 0.63475 62.506 62.208 62.843 -3.047 57 18 4 0 0 0 0.15214 2 12665 12661;12665 43.858 0 1 8043300 52179 2274 34680 34701 51052;51053 51053 -0.04160028178716857 VSDVSYDRF 9 Unmodified _VSDVSYDRF_ 0 0 0 LILRA1|p.L357*|1|0.29|ENSG00000104974|chr19:54596297-54596297|T/-|frameshift_variant;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;LILRA1|p.N448Kfs*34|1|0.3|ENSG00000104974|chr19:54600538-54600539|-/A|frameshift_variant;LILRA1|p.A451Ffs*34|1|0.05|ENSG00000104974|chr19:54600547-54600548|-/CATTCCAAGG|frameshift_variant;ENSG00000104974|ENST00000251372|LILRA1 LILRA1|p.L357*|1|0.29|ENSG00000104974|chr19:54596297-54596297|T/-|frameshift_variant LILRA1|p.L357*|1|0.29|ENSG00000104974|chr19:54596297-54596297|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 544.256371 1086.49819 0.39177 0.00021322 -0.09043 -4.9217E-05 0.30134 0.00016401 544.256264817534 65.653 0.69432 62.37 62.096 62.791 -3.2832 -0.059782 -0.00010119 NaN 43.858 51 19 4 NaN NaN NaN NaN 0 NaN NaN 0 6190300 52180 2274 34680 34701 -0.04160028178716857 VSDWSPMHE 9 Unmodified _VSDWSPMHE_ 0 0 0 nc|ENSG00000102048|Q96DX5-3|ASB9;nc|ENSG00000102048|Q96DX5-2|ASB9;ENST00000473862.5_1_X:15262630-15288056:-|nuORF;ENSG00000102048|ENST00000380488|ASB9 nc|ENSG00000102048|Q96DX5-3|ASB9 nc|ENSG00000102048|Q96DX5-3|ASB9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7808227539062 2 544.229299 1086.44404 NaN NaN NaN NaN NaN NaN NaN 62.276 1 62.276 61.776 62.776 0 0 0 0 0.22251 1 11958 11958 16.942 0 1 52181 2106 34681 34702 51054 51054 -0.09571943601918065 VSECCCDWMF 10 Unmodified _VSECCCDWMF_ 0 0 0 REV__nc|ENSG00000085224|P46100-2|ATRX REV__nc|ENSG00000085224|P46100-2|ATRX MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 611.8280029296875 2 611.70543 1221.39631 NaN NaN NaN NaN NaN NaN NaN 168.43 1 163.64 163.14 164.14 -4.7898 0 0 0 0.22588 1 34045 34045 1.6526 0 1 + 52182 14471 34682 34703 51055 51055 -0.20553425180310114 VSEGTTILLN 10 Unmodified _VSEGTTILLN_ 0 0 0 ENST00000518982.5_1_8:79646051-79659158:-|nuORF;ENST00000519833.5_1_8:79633588-79652311:-|nuORF;ENSG00000104432|ENST00000263851|IL7 ENST00000518982.5_1_8:79646051-79659158:-|nuORF ENST00000518982.5_1_8:79646051-79659158:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7003784179688 2 523.790047 1045.56554 -0.20812 -0.00010901 0.20535 0.00010756 -0.0027725 -1.4522E-06 523.7901921132927 29.484 0.41975 27.591 27.366 27.785 -1.8928 19 11 2 0 0 0 0.871 1 4975 4975 10.074 0 1 819000 52183 2237 34683 34704 51056 51056 0.0445800203226554 VSEHLLVLA 9 Unmodified _VSEHLLVLA_ 0 0 0 ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000512908.2_1_5:70398727-70422449:-|nuORF ENST00000315147.8_1_5:70265933-70281744:-|nuORF ENST00000315147.8_1_5:70265933-70281744:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2724914550781 2 490.792392 979.570232 0.19151 9.399E-05 -0.24639 -0.00012093 -0.054886 -2.6938E-05 490.7922212830247 140.8 0.61519 140.8 140.58 141.19 0 31 17 2 0 0 0 0.36689 1 28015 28015 26.884 0 1 6362200 52184 7896 34684 34705 51057 51057 0.07962930965652504 VSERDVYLTY 10 Unmodified _VSERDVYLTY_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD;ENST00000472677.1_1_22:50636123-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7810668945312 2 622.81151 1243.60847 0.14557 9.0665E-05 0.31362 0.00019533 0.45919 0.00028599 622.8116125788379 94.357 0.86217 94.357 93.936 94.798 0 62 24 4 0 0 0 0.0017503 1 18470 18470 114.19 45.082 1 32790000 52185 6089 34685 34706 51058 51058 -0.0035922791032589885 VSERDVYLTY 10 Unmodified _VSERDVYLTY_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD;ENST00000472677.1_1_22:50636123-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7583618164062 2 622.81151 1243.60847 1.001 0.00062344 -0.78189 -0.00048697 0.21911 0.00013647 622.8110104658884 98.613 0.97079 94.48 93.987 94.957 -4.1326 92 27 5 0 0 0 0.27562 1 19287 19287 39.213 9.3724 1 48502000 52186 6089 34685 34706 51059 51059 -0.0035922791032589885 VSERDVYLTY 10 Unmodified _VSERDVYLTY_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD;ENST00000472677.1_1_22:50636123-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7531127929688 2 622.81151 1243.60847 0.44472 0.00027697 -0.14782 -9.2061E-05 0.2969 0.00018491 622.8114030388058 98.776 0.87688 94.507 94.052 94.929 -4.2692 78 24 4 0 0 0 0.14025 1 18942 18942 49.742 19.901 1 52475000 52187 6089 34685 34706 51060 51060 -0.0035922791032589885 VSERDVYLTY 10 Unmodified _VSERDVYLTY_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD;ENST00000472677.1_1_22:50636123-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7647705078125 2 622.81151 1243.60847 0.31057 0.00019343 -0.030174 -1.8793E-05 0.2804 0.00017463 622.8114635073714 98.369 0.98053 94.412 93.99 94.97 -3.9564 94 28 5 0 0 0 5.3503E-44 3 18866 18866;18943;18946 197.81 119.08 1 49600000 52188 6089 34685 34706 51061;51062;51063 51061 -0.0035922791032589885 VSEVLGLL 8 Unmodified _VSEVLGLL_ 0 0 0 REV__SLC12A9|p.L559Cfs*36|2|0.2|ENSG00000146828|chr7:100861868-100861868|G/-|frameshift_variant REV__SLC12A9|p.L559Cfs*36|2|0.2|ENSG00000146828|chr7:100861868-100861868|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 415.25384521484375 2 415.255111 828.49567 NaN NaN NaN NaN NaN NaN NaN 82.287 1 78.589 78.089 79.089 -3.6985 0 0 0 0.21452 1 15692 15692 13.508 0 1 + 52189 16901 34686 34707 51064 51064 0.07456168154294573 VSFLQKRLC 9 Unmodified _VSFLQKRLC_ 0 0 0 nc|ENSG00000157119|Q2TBA0-2|KLHL40;ENSG00000157119|ENST00000287777|KLHL40 nc|ENSG00000157119|Q2TBA0-2|KLHL40 nc|ENSG00000157119|Q2TBA0-2|KLHL40 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.785400390625 2 547.312969 1092.61138 0.4392 0.00024038 -1.1069 -0.0006058 -0.66767 -0.00036542 547.312519576073 84.065 0.45374 84.065 83.962 84.416 0 14 12 2 0 0 0 0.80521 1 16458 16458 10.824 2.2306 1 861490 52190 5119 34687 34708 51065 51065 0.06878368733509888 VSFPLVHL 8 Unmodified _VSFPLVHL_ 0 0 0 REV__nc|ENSG00000138075|Q9H222-2|ABCG5 REV__nc|ENSG00000138075|Q9H222-2|ABCG5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 456.2720642089844 2 456.271096 910.527639 NaN NaN NaN NaN NaN NaN NaN 136.25 1 136.25 135.75 136.75 0 0 0 0 0.22847 1 26996 26996 10.074 0 1 + 52191 16432 34688 34709 51066 51066 0.06879580628083204 VSFRKQKS 8 Unmodified _VSFRKQKS_ 0 0 0 ENST00000202917.9_1_12:113344619-113344745:+|nuORF ENST00000202917.9_1_12:113344619-113344745:+|nuORF ENST00000202917.9_1_12:113344619-113344745:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.268798828125 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 143.02 1 138.12 137.62 138.62 -4.8982 0 0 0 0.23538 1 27603 27603 0.12286 0 1 52192 8088 34689 34710 51067 51067 0.07092582399991443 VSFRSFCLPP 10 Unmodified _VSFRSFCLPP_ 0 0 0 REV__ENSG00000142235|ENST00000600059|LMTK3 REV__ENSG00000142235|ENST00000600059|LMTK3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3231201171875 2 576.797152 1151.57975 NaN NaN NaN NaN NaN NaN NaN 24.041 1 22.488 21.988 22.988 -1.5532 0 0 0 0.22588 1 4173 4173 3.5965 0.31518 1 + 52193 16663 34690 34711 51068 51068 0.010023759795330989 VSFVSQLLS 9 Unmodified _VSFVSQLLS_ 0 0 0 HEATR1|p.M1521V|1|0.49|ENSG00000119285|chr1:236564536-236564536|T/C|missense_variant HEATR1|p.M1521V|1|0.49|ENSG00000119285|chr1:236564536-236564536|T/C|missense_variant HEATR1|p.M1521V|1|0.49|ENSG00000119285|chr1:236564536-236564536|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2655944824219 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 118.71 1 118.71 118.21 119.21 0 0 0 0 0.23508 1 23381 23381 11.64 0 1 52194 11874 34691 34712 51069 51069 0.04846938211710494 VSGAGDGG 8 Unmodified _VSGAGDGG_ 0 0 0 nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant;UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant;UNC80|p.N2032*|1|0.42|ENSG00000144406|chr2:209936855-209936856|-/T|frameshift_variant;UNC80|p.T791Nfs*17|1|0.38|ENSG00000144406|chr2:209825945-209825946|AA/-|frameshift_variant nc|ENSG00000144406|Q8N2C7-4|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 2 310.137736 618.260919 NaN NaN NaN NaN NaN NaN NaN 58.626 1 55.716 55.216 56.216 -2.9105 0 0 0 0.2396 1 11262 11262 0 0 1 52195 4551 34692 34713 51070 51070 -0.06348129601406072 VSGAIATT 8 Unmodified _VSGAIATT_ 0 0 0 REV__CD163L1|p.I1179S|1|0.14|ENSG00000177675|chr12:7373514-7373514|A/C|missense_variant REV__CD163L1|p.I1179S|1|0.14|ENSG00000177675|chr12:7373514-7373514|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013854980469 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 135.44 1 135.44 134.94 135.94 0 0 0 0 0.21486 1 26828 26828 2.5775 0 1 + 52196 13323 34693 34714 51071 51071 0.015661625349594033 VSGAQPIL 8 Unmodified _VSGAQPIL_ 0 0 0 nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3 nc|ENSG00000105355|O60664-4|PLIN3 nc|ENSG00000105355|O60664-4|PLIN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3758544921875 1 784.45633 783.449054 0.91764 0.00071985 -0.41759 -0.00032758 0.50005 0.00039227 784.4559806263429 79.359 0.69098 79.359 79.031 79.722 0 37 19 2 0 0 0 0.25515 1 15403 15403 39.957 3.9131 1 6827200 52197 2299 34694 34715 51072 51072 0.04866728323008829 VSGAQPIL 8 Unmodified _VSGAQPIL_ 0 0 0 nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3 nc|ENSG00000105355|O60664-4|PLIN3 nc|ENSG00000105355|O60664-4|PLIN3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3923950195312 1 784.45633 783.449054 0.092055 7.2213E-05 0.40121 0.00031473 0.49326 0.00038694 784.4565407916613 83.035 0.68685 79.336 78.969 79.656 -3.6985 35 19 2 0 0 0 0.15482 1 15875 15875 52.268 6.2474 1 4696500 52198 2299 34694 34715 51073 51073 0.04866728323008829 VSGAQPIL 8 Unmodified _VSGAQPIL_ 0 0 0 nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3 nc|ENSG00000105355|O60664-4|PLIN3 nc|ENSG00000105355|O60664-4|PLIN3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 784.45633 783.449054 0.52796 0.00041416 0.071487 5.6078E-05 0.59945 0.00047024 784.4562714449604 82.882 0.77146 79.274 78.884 79.656 -3.6079 -0.040782 6.7773E-06 NaN 52.268 39 21 2 NaN NaN NaN NaN 0 NaN NaN 0 6343900 52199 2299 34694 34715 0.04866728323008829 VSGAQPIL 8 Unmodified _VSGAQPIL_ 0 0 0 nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3 nc|ENSG00000105355|O60664-4|PLIN3 nc|ENSG00000105355|O60664-4|PLIN3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 784.45633 783.449054 0.34244 0.00026863 0.24359 0.00019108 0.58602 0.00045971 784.4563836641548 83.162 0.69372 79.289 78.984 79.678 -3.8736 -0.025684 0.00014178 NaN 52.268 36 19 2 NaN NaN NaN NaN 0 NaN NaN 0 5179900 52200 2299 34694 34715 0.04866728323008829 VSGDPLIQLH 10 Unmodified _VSGDPLIQLH_ 0 0 0 REV__ENSG00000078579|ENST00000180166|FGF20 REV__ENSG00000078579|ENST00000180166|FGF20 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 114.66 1 110.18 109.68 110.68 -4.4726 0 0 0 0.22588 1 22593 22593 5.7834 0 1 + 52201 14382 34695 34716 51074 51074 0.0461712798901317 VSGDPLIQLH 10 Unmodified _VSGDPLIQLH_ 0 0 0 REV__ENSG00000078579|ENST00000180166|FGF20 REV__ENSG00000078579|ENST00000180166|FGF20 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20166015625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 114.64 1 110.08 109.58 110.58 -4.555 0 0 0 0.22588 1 22010 22010 5.7834 0 1 + 52202 14382 34695 34716 51075 51075 0.0461712798901317 VSGESERR 8 Unmodified _VSGESERR_ 0 0 0 REV__STRIP2|p.Y154Ifs*25|1|0.03|ENSG00000128578|chr7:129453276-129453277|-/ATCT|frameshift_variant REV__STRIP2|p.Y154Ifs*25|1|0.03|ENSG00000128578|chr7:129453276-129453277|-/ATCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23211669921875 2 460.23323 918.451907 NaN NaN NaN NaN NaN NaN NaN 119.64 1 115 114.5 115.5 -4.645 0 0 0 0.23811 1 22963 22963 0.12286 0 1 + 52203 15926 34696 34717 51076 51076 -0.010580482901445976 VSGGLLVHRQ 10 Unmodified _VSGGLLVHRQ_ 0 0 0 ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2824096679688 2 533.311815 1064.60908 NaN NaN NaN NaN NaN NaN NaN 85.641 1 81.929 81.429 82.429 -3.7117 0 0 0 0.22588 1 16364 16364 10.074 2.1638 1 52204 2702 34697 34718 51077 51077 0.07935656320046292 VSGGVAVAEAV 11 Unmodified _VSGGVAVAEAV_ 0 0 0 ENST00000370978.8_1_X:129402822-129402864:-|nuORF ENST00000370978.8_1_X:129402822-129402864:-|nuORF ENST00000370978.8_1_X:129402822-129402864:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7687683105469 2 479.763832 957.513111 0.31321 0.00015027 0.44197 0.00021204 0.75517 0.00036231 479.7641536101503 47.531 1.4721 47.531 46.946 48.418 0 131 41 5 0 0 0 0.53231 1 8902 8902 21.537 2.28 1 151620000 52205 9149 34698 34719 51078 51078 0.032654636892857525 VSGGVAVAEAV 11 Unmodified _VSGGVAVAEAV_ 0 0 0 ENST00000370978.8_1_X:129402822-129402864:-|nuORF ENST00000370978.8_1_X:129402822-129402864:-|nuORF ENST00000370978.8_1_X:129402822-129402864:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2525939941406 2 479.763832 957.513111 -0.1073 -5.148E-05 0.23699 0.0001137 0.12969 6.222E-05 479.7639846739819 50.114 1.8353 47.233 46.763 48.598 -2.8811 144 51 6 0 0 0 0.48275 3 9519 9490;9519;9536 36.506 2.2431 1 189620000 52206 9149 34698 34719 51079;51080;51081 51080 0.032654636892857525 VSGGVAVAEAV 11 Unmodified _VSGGVAVAEAV_ 0 0 0 ENST00000370978.8_1_X:129402822-129402864:-|nuORF ENST00000370978.8_1_X:129402822-129402864:-|nuORF ENST00000370978.8_1_X:129402822-129402864:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7690734863281 2 479.763832 957.513111 0.047665 2.2868E-05 0.11291 5.4169E-05 0.16057 7.7037E-05 479.7639539988803 50.252 0.88043 47.209 46.719 47.6 -3.0429 118 25 6 0 0 0 0.64855 1 9177 9177 15.248 1.3424 1 227000000 52207 9149 34698 34719 51082 51082 0.032654636892857525 VSGGVAVAEAV 11 Unmodified _VSGGVAVAEAV_ 0 0 0 ENST00000370978.8_1_X:129402822-129402864:-|nuORF ENST00000370978.8_1_X:129402822-129402864:-|nuORF ENST00000370978.8_1_X:129402822-129402864:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7689208984375 2 479.763832 957.513111 -0.10091 -4.8415E-05 0.28165 0.00013513 0.18074 8.6712E-05 479.7640134339921 50.231 1.2979 47.225 46.635 47.933 -3.0068 136 37 7 0 0 0 0.64855 2 9188 9188;9239 15.248 2.7169 1 181000000 52208 9149 34698 34719 51083;51084 51083 0.032654636892857525 VSGIEWDYI 9 Unmodified _VSGIEWDYI_ 0 0 0 ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21 ENST00000554270.5_1_14:88936247-89016761:-|nuORF ENST00000554270.5_1_14:88936247-89016761:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2657470703125 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 148.54 1 143.48 142.98 143.98 -5.0595 0 0 0 0.22621 1 28769 28769 15.847 1.9411 1 52209 1437 34699 34720 51085 51085 -0.02425956030560883 VSGKKEDFQG 10 Unmodified _VSGKKEDFQG_ 0 0 0 ENST00000479747.1_1_9:130678362-130679146:-|nuORF ENST00000479747.1_1_9:130678362-130679146:-|nuORF ENST00000479747.1_1_9:130678362-130679146:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7765502929688 2 547.77747 1093.54039 NaN NaN NaN NaN NaN NaN NaN 165.66 1 160.68 160.18 161.18 -4.9811 0 0 0 0.22583 1 32396 32396 13.906 2.4113 1 52210 10348 34700 34721 51086 51086 -0.0026405277033063612 VSGLEIHDSS 10 Unmodified _VSGLEIHDSS_ 0 0 0 nc|ENSG00000143740|Q5SQN1-3|SNAP47;nc|ENSG00000143740|Q5SQN1-4|SNAP47;SNAP47|p.A365Qfs*14|1|0.25|ENSG00000143740|chr1:227759450-227759450|C/-|frameshift_variant;ENSG00000143740|ENST00000617596|SNAP47;nc|ENSG00000143740|Q5SQN1-2|SNAP47;nc|ENSG00000143740|Q5SQN1|SNAP47 nc|ENSG00000143740|Q5SQN1-3|SNAP47 nc|ENSG00000143740|Q5SQN1-3|SNAP47 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2787475585938 2 522.253828 1042.4931 NaN NaN NaN NaN NaN NaN NaN 121.98 1 117.29 116.79 117.79 -4.6873 0 0 0 0.22323 1 23417 23417 24.021 0.87215 1 52211 4512 34701 34722 51087 51087 -0.026443320413363836 VSGLKQTLL 9 Unmodified _VSGLKQTLL_ 0 0 0 TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 319.911865234375 3 320.20257 957.585882 -0.63902 -0.00020462 1.0002 0.00032027 0.3612 0.00011566 320.2029133971013 16.682 0.20984 15.466 15.285 15.495 -1.2159 9 5 2 0 0 0 0.73309 1 2633 2633 2.7352 0 1 303250 52212 5821 34702 34723 51088 51088 0.10539217482721597 VSGLKQTLL 9 Unmodified _VSGLKQTLL_ 0 0 0 TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant TMC4|p.Q383Rfs*6|1|0.37|ENSG00000167608|chr19:54163872-54163872|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 320.20257 957.585882 -0.57326 -0.00018356 0.055274 1.7699E-05 -0.51798 -0.00016586 320.20259863460154 15.548 0.20081 15.548 15.473 15.673 0 0.040763 -0.00052446 NaN 2.7352 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 250930 52213 5821 34702 34723 0.10539217482721597 VSGLSLLLQ 9 Unmodified _VSGLSLLLQ_ 0 0 0 REV__nc|ENSG00000291309|P0DTL4|LY6S REV__nc|ENSG00000291309|P0DTL4|LY6S MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 466.7642822265625 2 465.286943 928.559333 0.13576 6.3168E-05 0.0040645 1.8912E-06 0.13983 6.5059E-05 465.2868437709534 162.53 0.76349 162.53 162.1 162.86 0 64 21 4 0 0 0 0.19983 1 32689 32689 14.987 0 1 131510000 + 52214 24328 34703 34724 51089 51089 0.092195285913931 VSGLVLLLIPQ 11 Unmodified _VSGLVLLLIPQ_ 0 0 0 REV__nc|ENSG00000169783|Q96FE5-2|LINGO1 REV__nc|ENSG00000169783|Q96FE5-2|LINGO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3348999023438 2 576.373549 1150.73255 NaN NaN NaN NaN NaN NaN NaN 128.02 1 128.02 127.52 128.52 0 0 0 0 0.23698 1 25281 25281 2.4985 0.65425 1 + 52215 18119 34704 34725 51090 51090 0.16320894647810746 VSGLVLLLIPQ 11 Unmodified _VSGLVLLLIPQ_ 0 0 0 REV__nc|ENSG00000169783|Q96FE5-2|LINGO1 REV__nc|ENSG00000169783|Q96FE5-2|LINGO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3316650390625 2 576.373549 1150.73255 0.4104 0.00023654 -0.98191 -0.00056594 -0.57151 -0.0003294 576.3744344825399 155.57 0.10735 150.32 150.25 150.36 -5.2526 6 2 3 0 0 0 0.96036 1 30172 30172 2.4985 2.1479 1 879780 + 52216 18119 34704 34725 51091 51091 0.16320894647810746 VSGMEGSS 8 Unmodified _VSGMEGSS_ 0 0 0 REV__IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant REV__IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 377.22467041015625 2 377.157811 752.301069 NaN NaN NaN NaN NaN NaN NaN 93.916 1 90.072 89.572 90.572 -3.844 0 0 0 0.23782 1 18011 18011 0.12286 0 1 + 52217 17568 34705 34726 51092 51092 -0.0849895099315745 VSGNSDSFRI 10 Unmodified _VSGNSDSFRI_ 0 0 0 REV__ENST00000482014.1_1_3:184099213-184099814:+|nuORF REV__ENST00000482014.1_1_3:184099213-184099814:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2606811523438 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 139.05 1 139.05 138.55 139.55 0 0 0 0 0.22573 1 27626 27626 15.248 1.7406 1 + 52218 13428 34706 34727 51093 51093 -0.017052234301445424 VSGNSDSFRI 10 Unmodified _VSGNSDSFRI_ 0 0 0 REV__ENST00000482014.1_1_3:184099213-184099814:+|nuORF REV__ENST00000482014.1_1_3:184099213-184099814:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2649536132812 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 142.96 1 142.96 142.46 143.46 0 0 0 0 0.22588 1 28518 28518 10.8 0.72558 1 + 52219 13428 34706 34727 51094 51094 -0.017052234301445424 VSGPLPCRLPL 11 Unmodified _VSGPLPCRLPL_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3319702148438 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 166.85 1 162.06 161.56 162.56 -4.7898 0 0 0 0.21513 1 33570 33570 15.248 3.7538 1 52220 6634 34707 34728 51095 51095 0.08394924422009353 VSGPQAFPKLV 11 Unmodified _VSGPQAFPKLV_ 0 0 0 nc|ENSG00000179583|P33076-3|CIITA;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076-3|CIITA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 572.4003295898438 2 571.832049 1141.64954 0.10986 6.2823E-05 0.055928 3.1981E-05 0.16579 9.4804E-05 571.8319817466358 165.14 0.51556 160.35 160.16 160.68 -4.7898 20 14 2 0 0 0 0.75285 1 33133 33133 8.1555 0.24537 1 63571000 52221 6636 34708 34729 51096 51096 0.08438577919787349 VSGPTLDET 9 Unmodified _VSGPTLDET_ 0 0 0 REV__nc|ENSG00000155256|Q5T4F4-6|ZFYVE27 REV__nc|ENSG00000155256|Q5T4F4-6|ZFYVE27 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.22650146484375 2 459.724372 917.434192 -0.057234 -2.6312E-05 0.63254 0.0002908 0.57531 0.00026448 459.72457041776227 80.025 0.63398 76.515 76.121 76.755 -3.5102 27 17 2 0 0 0 0.55979 1 15622 15622 15.847 0 1 1728500 + 52222 17211 34709 34730 51097 51097 -0.027828083356666866 VSGQPGTQK 9 Unmodified _VSGQPGTQK_ 0 0 0 ENST00000560852.1_1_14:24630531-24632747:+|nuORF;ENST00000560365.5_1_14:24630521-24632747:+|nuORF;ENST00000561415.1_1_14:24630521-24633357:+|nuORF;ENSG00000213928|ENST00000396864|IRF9 ENST00000560852.1_1_14:24630531-24632747:+|nuORF ENST00000560852.1_1_14:24630531-24632747:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 452.2329406738281 2 451.240524 900.466495 -0.42026 -0.00018964 0.41873 0.00018895 -0.0015311 -6.9088E-07 451.2406899309763 38.875 0.77563 36.326 36.05 36.825 -2.5491 45 21 3 0 0 0 0.67531 1 7310 7310 7.9102 0 1 12304000 52223 7709 34710 34731 51098 51098 0.012280238580046898 VSGQPGTQK 9 Unmodified _VSGQPGTQK_ 0 0 0 ENST00000560852.1_1_14:24630531-24632747:+|nuORF;ENST00000560365.5_1_14:24630521-24632747:+|nuORF;ENST00000561415.1_1_14:24630521-24633357:+|nuORF;ENSG00000213928|ENST00000396864|IRF9 ENST00000560852.1_1_14:24630531-24632747:+|nuORF ENST00000560852.1_1_14:24630531-24632747:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 451.240524 900.466495 0.28431 0.00012829 -0.24445 -0.00011031 0.039859 1.7986E-05 451.2403962948981 36.473 0.70985 36.473 36.248 36.957 0 0.09676 -0.00027045 NaN 7.9102 41 19 3 NaN NaN NaN NaN 0 NaN NaN 0 12802000 52224 7709 34710 34731 0.012280238580046898 VSGQPGTQK 9 Unmodified _VSGQPGTQK_ 0 0 0 ENST00000560852.1_1_14:24630531-24632747:+|nuORF;ENST00000560365.5_1_14:24630521-24632747:+|nuORF;ENST00000561415.1_1_14:24630521-24633357:+|nuORF;ENSG00000213928|ENST00000396864|IRF9 ENST00000560852.1_1_14:24630531-24632747:+|nuORF ENST00000560852.1_1_14:24630531-24632747:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 451.240524 900.466495 -0.0052489 -2.3685E-06 0.0046229 2.086E-06 -0.00062603 -2.8249E-07 451.2404691982615 38.781 0.52863 36.339 36.054 36.582 -2.4419 -0.03661 -4.5668E-05 NaN 7.9102 41 14 4 NaN NaN NaN NaN 0 NaN NaN 0 11249000 52225 7709 34710 34731 0.012280238580046898 VSGQPGTQK 9 Unmodified _VSGQPGTQK_ 0 0 0 ENST00000560852.1_1_14:24630531-24632747:+|nuORF;ENST00000560365.5_1_14:24630521-24632747:+|nuORF;ENST00000561415.1_1_14:24630521-24633357:+|nuORF;ENSG00000213928|ENST00000396864|IRF9 ENST00000560852.1_1_14:24630531-24632747:+|nuORF ENST00000560852.1_1_14:24630531-24632747:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 451.240524 900.466495 0.10853 4.8975E-05 -0.1375 -6.2045E-05 -0.028966 -1.3071E-05 451.2404177049356 38.771 0.59746 36.366 36.021 36.619 -2.4049 -0.010008 -0.00017393 NaN 7.9102 44 16 4 NaN NaN NaN NaN 0 NaN NaN 0 8501200 52226 7709 34710 34731 0.012280238580046898 VSGQVVLFHLP 11 Unmodified _VSGQVVLFHLP_ 0 0 0 REV__ANKK1|p.A371V|1|0.12|ENSG00000170209|chr11:113399081-113399081|C/T|missense_variant REV__ANKK1|p.A371V|1|0.12|ENSG00000170209|chr11:113399081-113399081|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 597.8846435546875 2 598.345323 1194.67609 NaN NaN NaN NaN NaN NaN NaN 27.343 1 25.561 25.061 26.061 -1.7821 0 0 0 0.23087 1 4855 4855 7.609 0.88579 1 + 52227 13051 34711 34732 51099 51099 0.08654266811140587 VSGRRRLLLLL 11 Unmodified _VSGRRRLLLLL_ 0 0 0 GRSF1|p.S171Qfs*16|1|0.36|ENSG00000132463|chr4:70836161-70836161|A/-|frameshift_variant;ENST00000505068.5_1_4:71691792-71705589:-|nuORF;ENSG00000132463|ENST00000254799|GRSF1 GRSF1|p.S171Qfs*16|1|0.36|ENSG00000132463|chr4:70836161-70836161|A/-|frameshift_variant GRSF1|p.S171Qfs*16|1|0.36|ENSG00000132463|chr4:70836161-70836161|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 648.4238891601562 2 648.435338 1294.85612 NaN NaN NaN NaN NaN NaN NaN 166.28 1 161.49 160.99 161.99 -4.7898 0 0 0 0.23698 1 33385 33385 1.1933 0.79263 1 52228 3728 34712 34733 51100 51100 0.22048990538792168 VSGRYHCRC 9 Unmodified _VSGRYHCRC_ 0 0 0 REV__OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant REV__OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.280029296875 2 540.744928 1079.4753 0.091295 4.9368E-05 1.5211 0.00082252 1.6124 0.00087188 540.7456632718485 24.303 0.30836 22.769 22.542 22.85 -1.5342 11 8 2 0 0 0 0.81703 1 3945 3945 14.838 5.4551 1 328460 + 52229 17806 34713 34734 51101 51101 -0.061256490488176496 VSGSGGLH 8 Unmodified _VSGSGGLH_ 0 0 0 REV__nc|ENSG00000079308|Q9HBL0-1|TNS1 REV__nc|ENSG00000079308|Q9HBL0-1|TNS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 713.9514770507812 1 713.357679 712.350402 0.44883 0.00032017 1.3492 0.00096249 1.7981 0.0012827 713.3587855922269 166.31 0.65445 166.31 166.1 166.75 0 30 18 2 0 0 0 1.0147 1 33805 33805 5.2307 0 1 116860000 + 52230 14394 34714 34735 51102 51102 -0.017278749220622558 VSGSRDKTIKL 11 Unmodified _VSGSRDKTIKL_ 0 0 0 ENSG00000204628|ENST00000512805|RACK1;ENST00000502890.5_1_5:180667315-180668686:-|nuORF;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000507261.1_1_5:180668485-180669312:-|nuORF ENSG00000204628|ENST00000512805|RACK1;ENST00000507261.1_1_5:180668485-180669312:-|nuORF ENSG00000204628|ENST00000512805|RACK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2791137695312 2 602.356419 1202.69829 NaN NaN NaN NaN NaN NaN NaN 63.774 1 60.517 60.017 61.017 -3.2567 0 0 0 0.22632 1 11968 11968 0.00056442 0 1 52231 7599;10695 34715 34736 51103 51103 0.10504446488880603 VSGSRDKTIKL 11 Unmodified _VSGSRDKTIKL_ 0 0 0 ENSG00000204628|ENST00000512805|RACK1;ENST00000502890.5_1_5:180667315-180668686:-|nuORF;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000507261.1_1_5:180668485-180669312:-|nuORF ENSG00000204628|ENST00000512805|RACK1;ENST00000507261.1_1_5:180668485-180669312:-|nuORF ENSG00000204628|ENST00000512805|RACK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.29296875 2 602.356419 1202.69829 NaN NaN NaN NaN NaN NaN NaN 63.809 1 60.553 60.053 61.053 -3.2567 0 0 0 0.22632 1 11974 11974 0.00056442 0 1 52232 7599;10695 34715 34736 51104 51104 0.10504446488880603 VSGSSDKRIV 10 Unmodified _VSGSSDKRIV_ 0 0 0 REV__ENST00000415664.2_21:10987833-11013471:-|nuORF REV__ENST00000415664.2_21:10987833-11013471:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6985473632812 2 524.293288 1046.57202 0.17998 9.4363E-05 1.3155 0.00068971 1.4955 0.00078407 524.2946739156392 137.62 0.25058 137.62 137.41 137.66 0 8 6 2 0 0 0 0.86261 1 27283 27283 3.5965 0 1 4372100 + 52233 21457 34716 34737 51105 51105 0.050599399836073644 VSGTIPHFSH 10 Unmodified _VSGTIPHFSH_ 0 0 0 MUC16|p.N11594H|1|0.35|ENSG00000181143|chr19:8936175-8936175|T/G|missense_variant MUC16|p.N11594H|1|0.35|ENSG00000181143|chr19:8936175-8936175|T/G|missense_variant MUC16|p.N11594H|1|0.35|ENSG00000181143|chr19:8936175-8936175|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2637939453125 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 139.78 1 139.78 139.28 140.28 0 0 0 0 0.22588 1 27800 27800 9.3831 0.63772 1 52234 12175 34717 34738 51106 51106 -0.001803118423140404 VSGVEAEPSPD 11 Unmodified _VSGVEAEPSPD_ 0 0 0 nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7951049804688 2 543.751118 1085.48768 NaN NaN NaN NaN NaN NaN NaN 58.673 1 55.421 54.921 55.921 -3.2517 0 0 0 0.11991 1 10906 10906 32.786 7.3864 1 52235 3411 34718 34739 51107 51107 -0.05164055623799868 VSGVHIDF 8 Unmodified _VSGVHIDF_ 0 0 0 ENST00000506157.1_1_4:2889441-2900342:+|nuORF;ENST00000508684.5_1_4:2877642-2900342:+|nuORF ENST00000506157.1_1_4:2889441-2900342:+|nuORF ENST00000506157.1_1_4:2889441-2900342:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21673583984375 2 437.226885 872.439217 NaN NaN NaN NaN NaN NaN NaN 62.926 1 59.965 59.465 60.465 -2.9614 0 0 0 0.21486 1 12146 12146 12.532 0 1 52236 10680 34719 34740 51108 51108 -0.0021045968238695423 VSGVLTAK 8 Unmodified _VSGVLTAK_ 0 0 0 REV__ENST00000527932.1_1_1:46080644-46081380:+|nuORF REV__ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.1900634765625 2 387.739628 773.464704 -0.44313 -0.00017182 0.34883 0.00013526 -0.094302 -3.6564E-05 387.7397178087225 53.879 0.37999 50.995 50.736 51.116 -2.8837 19 10 3 0 0 0 0.74718 1 10282 10282 18.135 0 1 18043000 + 52237 22714 34720 34741 51109 51109 0.06891014840039134 VSGVTHQHMV 10 Unmodified _VSGVTHQHMV_ 0 0 0 ISG20|p.P61H|1|0.28|ENSG00000172183|chr15:88639548-88639548|C/A|missense_variant ISG20|p.P61H|1|0.28|ENSG00000172183|chr15:88639548-88639548|C/A|missense_variant ISG20|p.P61H|1|0.28|ENSG00000172183|chr15:88639548-88639548|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7750244140625 2 547.774208 1093.53386 NaN NaN NaN NaN NaN NaN NaN 165.08 1 165.08 164.58 165.58 0 0 0 0 0.22588 1 33459 33459 10.074 0.6908 1 52238 11956 34721 34742 51110 51110 -0.009162692026848163 VSGVVDDAL 9 Unmodified _VSGVVDDAL_ 0 0 0 REV__nc|ENSG00000141556|Q9BTW9-4|TBCD REV__nc|ENSG00000141556|Q9BTW9-4|TBCD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2356872558594 2 437.729458 873.444362 -0.2312 -0.0001012 0.28508 0.00012479 0.053878 2.3584E-05 437.72955279678035 69.978 0.59757 66.798 66.545 67.143 -3.1796 28 16 2 0 0 0 0.72864 1 13656 13656 11.64 3.7301 1 2447400 + 52239 24073 34722 34743 51111 51111 0.002577993895556574 VSGVVSKV 8 Unmodified _VSGVVSKV_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.2013854980469 2 387.739628 773.464704 -0.6802 -0.00026374 0.72484 0.00028105 0.044643 1.731E-05 387.73986914807017 54.076 0.31697 50.938 50.747 51.064 -3.1377 16 8 3 0 0 0 0.96284 1 10010 10010 13.508 0 1 15434000 52240 565 34723 34744 51112 51112 0.06891014840050502 VSHQLLSSLAA 11 Unmodified _VSHQLLSSLAA_ 0 0 0 REV__ENST00000460905.5_1_21:44073904-44153480:+|nuORF REV__ENST00000460905.5_1_21:44073904-44153480:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.88037109375 3 375.880267 1124.61897 NaN NaN NaN NaN NaN NaN NaN 10.577 1 9.673 9.173 10.173 -0.90401 0 0 0 0.23698 1 1334 1334 0 0 1 + 52241 21885 34724 34745 51113 51113 0.06164799534803933 VSHSSYSY 8 Unmodified _VSHSSYSY_ 0 0 0 REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2434997558594 2 465.203607 928.392661 NaN NaN NaN NaN NaN NaN NaN 71.232 1 71.232 70.732 71.732 0 0 0 0 0.23366 1 13799 13799 0.62683 0 1 + 52242 18363 34725 34746 51114 51114 -0.07439944304326218 VSHTRMHAR 9 Unmodified _VSHTRMHAR_ 0 0 0 REV__ZNF516|p.A1119T|1|0.19|ENSG00000101493|chr18:76371476-76371476|C/T|missense_variant REV__ZNF516|p.A1119T|1|0.19|ENSG00000101493|chr18:76371476-76371476|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.79296875 2 547.785441 1093.55633 NaN NaN NaN NaN NaN NaN NaN 80.525 1 80.525 80.025 81.025 0 0 0 0 0.22621 1 15678 15678 15.847 5.7733 1 + 52243 25579 34726 34747 51115 51115 0.013293749855847636 VSIFKEVH 8 Unmodified _VSIFKEVH_ 0 0 0 REV__nc|ENSG00000145016|Q92622-3|RUBCN REV__nc|ENSG00000145016|Q92622-3|RUBCN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.1839294433594 3 320.183399 957.528367 NaN NaN NaN NaN NaN NaN NaN 44.183 1 41.436 40.936 41.936 -2.7475 0 0 0 0.21486 1 7993 7993 1.8442 0 1 + 52244 16815 34727 34748 51116 51116 0.04790375277138992 VSIGVTSSV 9 Unmodified _VSIGVTSSV_ 0 0 0 REV__tr|U7T0T7|U7T0T7_FUSNUPutativeK(+)-stimulatedpyrophosphate-energizedsodiumpumpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hppAPE=3SV=1 REV__tr|U7T0T7|U7T0T7_FUSNUPutativeK(+)-stimulatedpyrophosphate-energizedsodiumpumpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hppAPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.7432556152344 2 424.739825 847.465098 0.097198 4.1284E-05 0.1375 5.8401E-05 0.2347 9.9685E-05 424.73984715162476 129.49 0.82396 129.49 129.06 129.88 0 50 23 3 0 0 0 0.069179 1 25606 25606 26.995 0 1 9338400 + 52245 25276 34728 34749 51117 51117 0.03526389769228899 VSISLSVSFPD 11 Unmodified _VSISLSVSFPD_ 0 0 0 nc|ENSG00000114013|P42081-5|CD86;nc|ENSG00000114013|P42081-6|CD86;nc|ENSG00000114013|P42081-4|CD86;nc|ENSG00000114013|P42081-3|CD86;ENSG00000114013|ENST00000330540|CD86 nc|ENSG00000114013|P42081-5|CD86 nc|ENSG00000114013|P42081-5|CD86 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3201293945312 2 575.803154 1149.59175 0.0019512 1.1235E-06 0.21654 0.00012468 0.21849 0.00012581 575.8033453369352 135.38 0.66751 130.74 130.48 131.15 -4.6399 29 18 2 0 0 0 0.92792 1 26689 26689 5.2969 2.3016 1 3932700 52246 2770 34729 34750 51118 51118 0.02294271203709286 VSKCLIGM 8 Unmodified _VSKCLIGM_ 0 0 0 REV__ENSG00000145780|ENST00000274457|FEM1C REV__ENSG00000145780|ENST00000274457|FEM1C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2539367675781 2 425.729892 849.445231 0.29287 0.00012468 0.48535 0.00020663 0.77822 0.00033131 425.72999802101657 30.512 0.422 28.619 28.346 28.768 -1.8928 15 11 2 0 0 0 0.74718 1 5219 5219 24.674 2.9272 1 698010 + 52247 16853 34730 34751 51119 51119 0.014485992332765818 VSKDRPEI 8 Unmodified _VSKDRPEI_ 0 0 0 REV__ENST00000226951.10_1_4:10490183-10490225:-|nuORF REV__ENST00000226951.10_1_4:10490183-10490225:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.18994140625 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 111.21 1 106.72 106.22 107.22 -4.4915 0 0 0 0.21486 1 21346 21346 3.2813 0 1 + 52248 20049 34731 34752 51120 51120 0.03988883409135724 VSKFLINRRVF 11 Unmodified _VSKFLINRRVF_ 0 0 0 REV__ENST00000338779.10_1_16:70695390-70695915:-|nuORF REV__ENST00000338779.10_1_16:70695390-70695915:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2388610839844 3 460.282106 1377.82449 NaN NaN NaN NaN NaN NaN NaN 63.452 1 63.452 62.952 63.952 0 0 0 0 0.22632 1 12202 12202 0.11104 0 1 + 52249 20684 34732 34753 51121 51121 0.15068997784806015 VSKKKKKA 8 Unmodified _VSKKKKKA_ 0 0 0 ENST00000493504.1_1_19:59093379-59093973:+|nuORF ENST00000493504.1_1_19:59093379-59093973:+|nuORF ENST00000493504.1_1_19:59093379-59093973:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.21417236328125 3 306.214922 915.622936 NaN NaN NaN NaN NaN NaN NaN 177.71 1 172.8 172.3 173.3 -4.9088 0 0 0 0.21486 1 35442 35442 0 0 1 52250 10547 34733 34754 51122 51122 0.1617493381912709 VSKKLKKLL 9 Unmodified _VSKKLKKLL_ 0 0 0 ENST00000549100.5_1_12:100631797-100646034:-|nuORF;ENSG00000166153|ENST00000550587|DEPDC4 ENST00000549100.5_1_12:100631797-100646034:-|nuORF ENST00000549100.5_1_12:100631797-100646034:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 353.1891784667969 3 352.921627 1055.74305 NaN NaN NaN NaN NaN NaN NaN 26.444 1 24.662 24.162 25.162 -1.7821 0 0 0 0.19631 1 4668 4668 0.0033805 0 1 52251 11158 34734 34755 51123 51123 0.2174092209288574 VSKKMLIK 8 Unmodified _VSKKMLIK_ 0 0 0 REV__ENSG00000178295|ENST00000381254|GEN1 REV__ENSG00000178295|ENST00000381254|GEN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 316.2096862792969 3 316.208779 945.604509 NaN NaN NaN NaN NaN NaN NaN 57.777 1 54.867 54.367 55.367 -2.9105 0 0 0 0.21486 1 11088 11088 1.6526 0 1 + 52252 18598 34735 34756 51124 51124 0.1295305585292681 VSKLAREYE 9 Unmodified _VSKLAREYE_ 0 0 0 REV__tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1 REV__tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7935791015625 2 547.795663 1093.57677 0.16834 9.2214E-05 -0.045703 -2.5036E-05 0.12263 6.7178E-05 547.7955077691245 131.09 0.43192 126.46 126.17 126.61 -4.6359 18 11 2 0 0 0 0.31714 1 25806 25806 30.637 2.142 1 2470400 + 52253 25141 34736 34757 51125 51125 0.03372824126358864 VSKLAREYE 9 Unmodified _VSKLAREYE_ 0 0 0 REV__tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1 REV__tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.767822265625 2 547.795663 1093.57677 0.25762 0.00014112 0.33756 0.00018492 0.59518 0.00032604 547.7957170386653 131.26 0.63139 126.49 126.12 126.75 -4.7725 21 17 2 0 0 0 0.62921 1 25238 25238 24.021 4.7636 1 1316900 + 52254 25141 34736 34757 51126 51126 0.03372824126358864 VSKLKLKI 8 Unmodified _VSKLKLKI_ 0 0 0 REV__ENSG00000174718|ENST00000312561|RESF1 REV__ENSG00000174718|ENST00000312561|RESF1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649169921875 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 135.03 1 135.03 134.53 135.53 0 0 0 0 0.2396 1 26739 26739 0.12286 0 1 + 52255 18426 34737 34758 51127 51127 0.18136988621688488 VSKPDVWI 8 Unmodified _VSKPDVWI_ 0 0 0 REV__MLT1D_dup253|chr1:31570567-31571029:-|1.4791642238045395|0.3630010703550197|2.03|477.0|12|3|sense REV__MLT1D_dup253|chr1:31570567-31571029:-|1.4791642238045395|0.3630010703550197|2.03|477.0|12|3|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.18023681640625 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 107.08 1 107.08 106.58 107.58 0 0 0 0 0.21486 1 21054 21054 3.2813 0 1 + 52256 23863 34738 34759 51128 51128 0.04390972902854173 VSKPDVWI 8 Unmodified _VSKPDVWI_ 0 0 0 REV__MLT1D_dup253|chr1:31570567-31571029:-|1.4791642238045395|0.3630010703550197|2.03|477.0|12|3|sense REV__MLT1D_dup253|chr1:31570567-31571029:-|1.4791642238045395|0.3630010703550197|2.03|477.0|12|3|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1800537109375 3 315.179766 942.517468 NaN NaN NaN NaN NaN NaN NaN 107.35 1 107.35 106.85 107.85 0 0 0 0 0.21486 1 21108 21108 3.2813 0 1 + 52257 23863 34738 34759 51129 51129 0.04390972902854173 VSKVMWKY 8 Unmodified _VSKVMWKY_ 0 0 0 REV__FOXO1|p.E188K|1|0.65|ENSG00000150907|chr13:40665651-40665651|C/T|missense_variant REV__FOXO1|p.E188K|1|0.65|ENSG00000150907|chr13:40665651-40665651|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 521.1757202148438 2 520.783513 1039.55247 -0.61276 -0.00031912 2.8585 0.0014887 2.2457 0.0011695 520.7851794669838 60.657 0.51813 57.343 57.015 57.533 -3.3139 20 14 2 0 0 0 1.0147 1 11248 11248 0.6015 0 1 633090 + 52258 23550 34739 34760 51130 51130 0.03427892439140123 VSKVMWKY 8 Unmodified _VSKVMWKY_ 0 0 0 REV__FOXO1|p.E188K|1|0.65|ENSG00000150907|chr13:40665651-40665651|C/T|missense_variant REV__FOXO1|p.E188K|1|0.65|ENSG00000150907|chr13:40665651-40665651|C/T|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 520.783513 1039.55247 0.20096 0.00010466 2.6375 0.0013736 2.8385 0.0014782 520.7846592268087 60.539 0.46121 57.315 57.029 57.49 -3.2237 -0.013687 -0.00010298 NaN 0.6015 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 557080 + 52259 23550 34739 34760 0.03427892439140123 VSLAQTALQV 10 Unmodified _VSLAQTALQV_ 0 0 0 ENSG00000054690|ENST00000329153|PLEKHH1 ENSG00000054690|ENST00000329153|PLEKHH1 ENSG00000054690|ENST00000329153|PLEKHH1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.5260925292969 3 343.86948 1028.58661 0.51822 0.0001782 -0.67964 -0.00023371 -0.16142 -5.5508E-05 343.869175866772 28.288 0.37798 26.332 26.158 26.536 -1.9561 13 10 2 0 0 0 1.1218 1 5040 5040 10.151 1.995 1 277930 52260 1267 34740 34761 51131 51131 0.07346012131733914 VSLAQTALQV 10 Unmodified _VSLAQTALQV_ 0 0 0 ENSG00000054690|ENST00000329153|PLEKHH1 ENSG00000054690|ENST00000329153|PLEKHH1 ENSG00000054690|ENST00000329153|PLEKHH1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 343.86948 1028.58661 -0.37497 -0.00012894 0.64006 0.0002201 0.26509 9.1156E-05 343.86946463796903 28.306 0.31406 26.31 26.204 26.519 -1.9962 -0.010855 0.00077776 NaN 10.151 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 216870 52261 1267 34740 34761 0.07346012131733914 VSLATAAAA 9 Unmodified _VSLATAAAA_ 0 0 0 KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant;KDM6A|p.N634Tfs*57|1|0.26|ENSG00000147050|chrX:45063791-45063791|A/-|frameshift_variant;KDM6A|p.N906Mfs*31|1|0.53|ENSG00000147050|chrX:45076707-45076707|A/-|frameshift_variant;KDM6A|p.T1081Pfs*2|1|0.15|ENSG00000147050|chrX:45082743-45082743|A/-|frameshift_variant;nc|ENSG00000147050|O15550|KDM6A;ENSG00000147050|ENST00000611820|KDM6A KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7212829589844 2 387.721436 773.428318 0.32393 0.00012559 -0.093772 -3.6358E-05 0.23015 8.9236E-05 387.7213164566901 71.352 0.56721 67.772 67.47 68.037 -3.5798 31 15 3 0 0 0 0.37087 1 13414 13414 0.87518 0 1 1802400 52262 4678 34741 34762 51132 51132 0.03254137943315527 VSLCIYTLYE 10 Unmodified _VSLCIYTLYE_ 0 0 0 REV__nc|ENSG00000168952|Q8NFX7-2|STXBP6 REV__nc|ENSG00000168952|Q8NFX7-2|STXBP6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3019409179688 2 602.301933 1202.58931 NaN NaN NaN NaN NaN NaN NaN 11.578 1 10.449 9.9491 10.949 -1.1293 0 0 0 0.22588 1 1378 1378 0 0 1 + 52263 18069 34742 34763 51133 51133 -0.0038790052556123555 VSLDRTAPP 9 Unmodified _VSLDRTAPP_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;PCLO|p.Q3062Tfs*25|1|0.2|ENSG00000186472|chr7:82951405-82951406|-/G|frameshift_variant;PCLO|p.T3933Nfs*47|1|0.06|ENSG00000186472|chr7:82916188-82916189|-/T|frameshift_variant;PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant;PCLO|p.M3036Tfs*24|1|0.06|ENSG00000186472|chr7:82951481-82951482|-/G|frameshift_variant;PCLO|p.Y3007Lfs*2|1|0.28|ENSG00000186472|chr7:82951935-82951936|-/A|frameshift_variant;PCLO|p.P2408Lfs*36|1|0.44|ENSG00000186472|chr7:82953730-82953730|G/-|frameshift_variant;PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7235107421875 2 478.263999 954.513445 -0.072409 -3.463E-05 -0.095903 -4.5867E-05 -0.16831 -8.0497E-05 478.26389937408265 35.15 0.48872 35.15 34.961 35.45 0 20 13 2 0 0 0 0.47479 1 6459 6459 37.974 1.847 1 1865700 52264 7060 34743 34764 51134 51134 0.03436883409119673 VSLDRTAPP 9 Unmodified _VSLDRTAPP_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;PCLO|p.Q3062Tfs*25|1|0.2|ENSG00000186472|chr7:82951405-82951406|-/G|frameshift_variant;PCLO|p.T3933Nfs*47|1|0.06|ENSG00000186472|chr7:82916188-82916189|-/T|frameshift_variant;PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant;PCLO|p.M3036Tfs*24|1|0.06|ENSG00000186472|chr7:82951481-82951482|-/G|frameshift_variant;PCLO|p.Y3007Lfs*2|1|0.28|ENSG00000186472|chr7:82951935-82951936|-/A|frameshift_variant;PCLO|p.P2408Lfs*36|1|0.44|ENSG00000186472|chr7:82953730-82953730|G/-|frameshift_variant;PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7319030761719 2 478.263999 954.513445 NaN NaN NaN NaN NaN NaN NaN 52.059 1 49.008 48.508 49.508 -3.0517 0 0 0 0.22962 1 9602 9602 14.838 0 1 52265 7060 34743 34764 51135 51135 0.03436883409119673 VSLEMEAE 8 Unmodified _VSLEMEAE_ 0 0 0 REV__ENST00000527512.5_1_8:146171322-146176236:-|nuORF REV__ENST00000527512.5_1_8:146171322-146176236:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 454.2073059082031 2 454.207501 906.400449 NaN NaN NaN NaN NaN NaN NaN 148.77 1 143.71 143.21 144.21 -5.0595 0 0 0 0.22934 1 28822 28822 0.62683 0.50396 1 + 52266 18172 34744 34765 51136 51136 -0.056495530990673615 VSLFQDSQAV 10 Unmodified _VSLFQDSQAV_ 0 0 0 nc|ENSG00000185513|Q9Y468-2|L3MBTL1;nc|ENSG00000185513|Q9Y468-4|L3MBTL1;nc|ENSG00000185513|Q9Y468-1|L3MBTL1;nc|ENSG00000185513|Q9Y468|L3MBTL1;ENSG00000185513|ENST00000418998|L3MBTL1 nc|ENSG00000185513|Q9Y468-2|L3MBTL1 nc|ENSG00000185513|Q9Y468-2|L3MBTL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.781982421875 2 547.279846 1092.54514 0.085816 4.6965E-05 0.64329 0.00035206 0.7291 0.00039902 547.2789464035222 49.236 0.52726 46.355 46.132 46.66 -2.8811 24 14 3 0 0 0 0.42762 1 9342 9342 3.5927 3.3273 1 936210 52267 6996 34745 34766 51137 51137 0.002568313724395921 VSLHAAQF 8 Unmodified _VSLHAAQF_ 0 0 0 REV__ENST00000371600.7_1_9:139937867-139938101:-|nuORF REV__ENST00000371600.7_1_9:139937867-139938101:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2148132324219 2 436.734877 871.455202 NaN NaN NaN NaN NaN NaN NaN 134.04 1 129.16 128.66 129.66 -4.8726 0 0 0 0.21486 1 25752 25752 12.532 1.7076 1 + 52268 21010 34746 34767 51138 51138 0.014332465545066952 VSLKLIVF 8 Unmodified _VSLKLIVF_ 0 0 0 tr|U7SPB8|U7SPB8_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01806PE=3SV=1;tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1 tr|U7SPB8|U7SPB8_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01806PE=3SV=1 tr|U7SPB8|U7SPB8_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01806PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2381896972656 2 459.804771 917.59499 0.14173 6.517E-05 0.67849 0.00031197 0.82023 0.00037714 459.80504439316366 64.063 0.60684 60.647 60.457 61.064 -3.4158 22 16 2 0 0 0 1.0095 1 12037 12037 5.7604 3.1829 1 881600 52269 26042 34747 34768 51139 51139 0.13289610839046873 VSLKLLIKG 9 Unmodified _VSLKLLIKG_ 0 0 0 REV__ENST00000431076.5_1_2:155098684-155265690:+|nuORF REV__ENST00000431076.5_1_2:155098684-155265690:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 485.8675537109375 2 485.836603 969.658653 NaN NaN NaN NaN NaN NaN NaN 9.1898 1 8.3956 7.8956 8.8956 -0.79424 0 0 0 0.23508 1 1039 1039 0 0 1 + 52270 21615 34748 34769 51140 51140 0.1726097127615276 VSLLKKML 8 Unmodified _VSLLKKML_ 0 0 0 ENSG00000110422|ENST00000303296|HIPK3;nc|ENSG00000110422|Q9H422-2|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2045593261719 3 311.205146 930.59361 NaN NaN NaN NaN NaN NaN NaN 6.153 1 6.153 5.653 6.653 0 0 0 0 0.21486 1 426 426 0 0 1 52271 2574 34749 34770 51141 51141 0.12553653478619253 VSLLKKML 8 Unmodified _VSLLKKML_ 0 0 0 ENSG00000110422|ENST00000303296|HIPK3;nc|ENSG00000110422|Q9H422-2|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2207336425781 3 311.205146 930.59361 NaN NaN NaN NaN NaN NaN NaN 7.8211 1 7.8211 7.3211 8.3211 0 0 0 0 0.21486 1 754 754 0 0 1 52272 2574 34749 34770 51142 51142 0.12553653478619253 VSLLKKML 8 Unmodified _VSLLKKML_ 0 0 0 ENSG00000110422|ENST00000303296|HIPK3;nc|ENSG00000110422|Q9H422-2|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.20458984375 3 311.205146 930.59361 NaN NaN NaN NaN NaN NaN NaN 119.69 1 119.69 119.19 120.19 0 0 0 0 0.21486 1 23589 23589 0 0 1 52273 2574 34749 34770 51143 51143 0.12553653478619253 VSLLKKML 8 Unmodified _VSLLKKML_ 0 0 0 ENSG00000110422|ENST00000303296|HIPK3;nc|ENSG00000110422|Q9H422-2|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.20440673828125 3 311.205146 930.59361 NaN NaN NaN NaN NaN NaN NaN 8.0894 1 7.4102 6.9102 7.9102 -0.67913 0 0 0 0.21486 1 804 804 0 0 1 52274 2574 34749 34770 51144 51144 0.12553653478619253 VSLLKKML 8 Unmodified _VSLLKKML_ 0 0 0 ENSG00000110422|ENST00000303296|HIPK3;nc|ENSG00000110422|Q9H422-2|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.20452880859375 3 311.205146 930.59361 NaN NaN NaN NaN NaN NaN NaN 8.5595 1 7.495 6.995 7.995 -1.0645 0 0 0 0.21486 1 850 850 0 0 1 52275 2574 34749 34770 51145 51145 0.12553653478619253 VSLLKKML 8 Unmodified _VSLLKKML_ 0 0 0 ENSG00000110422|ENST00000303296|HIPK3;nc|ENSG00000110422|Q9H422-2|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 ENSG00000110422|ENST00000303296|HIPK3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.204833984375 3 311.205146 930.59361 NaN NaN NaN NaN NaN NaN NaN 121.8 1 117.27 116.77 117.77 -4.5305 0 0 0 0.21486 1 23450 23450 0 0 1 52276 2574 34749 34770 51146 51146 0.12553653478619253 VSLLKLKFKK 10 Unmodified _VSLLKLKFKK_ 0 0 0 REV__nc|ENSG00000103490|Q9ULZ3-2|PYCARD REV__nc|ENSG00000103490|Q9ULZ3-2|PYCARD MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.29443359375 2 602.413009 1202.81146 NaN NaN NaN NaN NaN NaN NaN 158.44 1 153.16 152.66 153.66 -5.2748 0 0 0 2.8426 1 30749 30749 0 0 1 + 52277 14884 34750 34771 51147 51147 0.2181716667271303 VSLLLVWV 8 Unmodified _VSLLLVWV_ 0 0 0 REV__ENST00000309137.12_1_16:57187828-57187963:-|nuORF REV__ENST00000309137.12_1_16:57187828-57187963:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650390625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 58.782 1 55.577 55.077 56.077 -3.2052 0 0 0 0.21486 1 10976 10976 1.8442 0 1 + 52278 20466 34751 34772 51148 51148 0.11265324321982462 VSLNKVLM 8 Unmodified _VSLNKVLM_ 0 0 0 REV__nc|ENSG00000140451|Q9H611-4|PIF1 REV__nc|ENSG00000140451|Q9H611-4|PIF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.75494384765625 2 452.270238 902.525924 -0.39081 -0.00017675 0.5378 0.00024323 0.14699 6.648E-05 452.27042707398346 111.47 0.90793 107.05 106.61 107.52 -4.4231 65 25 3 0 0 0 0.62642 1 22011 22011 20.454 2.3186 1 12310000 + 52279 16575 34752 34773 51149 51149 0.07076203547831028 VSLQHFPE 8 Unmodified _VSLQHFPE_ 0 0 0 TMEM145|p.R339Q|1|0.19|ENSG00000167619|chr19:42317824-42317824|G/A|missense_variant TMEM145|p.R339Q|1|0.19|ENSG00000167619|chr19:42317824-42317824|G/A|missense_variant TMEM145|p.R339Q|1|0.19|ENSG00000167619|chr19:42317824-42317824|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7256774902344 2 478.745442 955.476331 -0.037177 -1.7798E-05 -0.0034596 -1.6563E-06 -0.040636 -1.9455E-05 478.7455167721419 85.647 0.39784 81.983 81.819 82.216 -3.6641 16 10 2 0 0 0 0.9383 1 16714 16714 19.257 3.4098 1 1492200 52280 25860 34753 34774 51150 51150 -0.003187881366216061 VSLTCDEGEE 10 Unmodified _VSLTCDEGEE_ 0 0 0 REV__ENSG00000169641|ENST00000302291|LUZP1 REV__ENSG00000169641|ENST00000302291|LUZP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.281494140625 2 541.221336 1080.42812 0.20513 0.00011102 1.9482 0.0010544 2.1533 0.0011654 541.7224247751905 133.85 0.10481 129.21 129.14 129.25 -4.6399 4 2 2 0 0 0 0.90091 1 26398 26398 6.2058 0 1 627960 + 52281 18112 34754 34775 51151 51151 -0.1088769462946857 VSLTVRPRA 9 Unmodified _VSLTVRPRA_ 0 0 0 chr13:43055543-43068930|142|16.39|0.22|6.25|+|0|TE_info:LTR19C,LTR19C_dup94,ERV1,LTR,donor,+,43054751,43055543|None,DNAJC15|12;chr13:43055543-43065686|203|11.27|0.22|5.7|+|0|TE_info:LTR19C,LTR19C_dup94,ERV1,LTR,donor,+,43054751,43055543|None,DNAJC15|12 chr13:43055543-43068930|142|16.39|0.22|6.25|+|0|TE_info:LTR19C,LTR19C_dup94,ERV1,LTR,donor,+,43054751,43055543|None,DNAJC15|12 chr13:43055543-43068930|142|16.39|0.22|6.25|+|0|TE_info:LTR19C,LTR19C_dup94,ERV1,LTR,donor,+,43054751,43055543|None,DNAJC15|12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 499.86444091796875 2 499.808908 997.603263 NaN NaN NaN NaN NaN NaN NaN 13.013 1 11.884 11.384 12.384 -1.1293 0 0 0 0.19646 1 1648 1648 1.2148 0 1 52282 538 34755 34776 51152 51152 0.10436557808361613 VSLYQEEL 8 Unmodified _VSLYQEEL_ 0 0 0 REV__ENST00000519738.5_1_8:37333398-37386671:-|nuORF REV__ENST00000519738.5_1_8:37333398-37386671:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2646179199219 2 490.75039 979.486227 0.19573 9.6052E-05 -0.082107 -4.0294E-05 0.11362 5.5758E-05 490.7501953488164 146.86 0.59048 141.74 141.48 142.07 -5.1108 19 16 2 0 0 0 0.99494 1 28453 28453 8.5933 0 1 1878900 + 52283 22624 34756 34777 51153 51153 -0.004336449219067617 VSMDVTVSEE 10 Unmodified _VSMDVTVSEE_ 0 0 0 REV__nc|ENSG00000030066|Q12769|NUP160 REV__nc|ENSG00000030066|Q12769|NUP160 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7682495117188 2 548.247354 1094.48016 0.43167 0.00023666 1.6966 0.00093018 2.1283 0.0011668 548.249926809151 150.7 0.24121 145.58 145.49 145.73 -5.1204 10 6 3 0 0 0 0.84281 1 29234 29234 9.3831 0 1 1026400 + 52284 14013 34757 34778 51154 51154 -0.06330531215735391 VSMFDVTM 8 Unmodified _VSMFDVTM_ 0 0 0 REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2;REV__nc|ENSG00000152404|Q2TBE0-2|CWF19L2 REV__nc|ENSG00000152404|Q2TBE0-2|CWF19L2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2477722167969 2 465.208989 928.403426 NaN NaN NaN NaN NaN NaN NaN 74.792 1 71.198 70.698 71.698 -3.594 0 0 0 0.23025 1 14210 14210 0.12286 0 1 + 52285 13621;13622 34758 34779 51155 51155 -0.06364001245913187 VSMWMRASP 9 Unmodified _VSMWMRASP_ 0 0 0 REV__ENST00000598055.1_1_19:41116760-41118026:+|nuORF REV__ENST00000598055.1_1_19:41116760-41118026:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.274169921875 2 532.75443 1063.49431 0.076122 4.0554E-05 -0.24381 -0.00012989 -0.16769 -8.9337E-05 532.7542122444651 60.828 0.38261 57.895 57.681 58.064 -2.9333 13 10 2 0 0 0 0.52396 1 11715 11715 18.146 1.9972 1 876550 + 52286 19993 34759 34780 51156 51156 -0.03490112477766161 VSNGPADTL 9 Unmodified _VSNGPADTL_ 0 0 0 ENSG00000186340|ENST00000617924|THBS2;THBS2|p.D125Y|1|0.21|ENSG00000186340|chr6:169248653-169248653|C/A|missense_variant ENSG00000186340|ENST00000617924|THBS2 ENSG00000186340|ENST00000617924|THBS2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22015380859375 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 134.43 1 129.55 129.05 130.05 -4.8726 0 0 0 0.19684 1 25824 25824 0.073264 0 1 52287 7052 34760 34781 51157 51157 -0.01735371270228825 VSNGPADTL 9 Unmodified _VSNGPADTL_ 0 0 0 ENSG00000186340|ENST00000617924|THBS2;THBS2|p.D125Y|1|0.21|ENSG00000186340|chr6:169248653-169248653|C/A|missense_variant ENSG00000186340|ENST00000617924|THBS2 ENSG00000186340|ENST00000617924|THBS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2202453613281 2 437.219257 872.423961 NaN NaN NaN NaN NaN NaN NaN 134.4 1 129.58 129.08 130.08 -4.8175 0 0 0 0.19684 1 25875 25875 0.073264 0.029476 1 52288 7052 34760 34781 51158 51158 -0.01735371270228825 VSNLRVKRD 9 Unmodified _VSNLRVKRD_ 0 0 0 ENST00000484875.5_1_20:46386013-46414798:-|nuORF ENST00000484875.5_1_20:46386013-46414798:-|nuORF ENST00000484875.5_1_20:46386013-46414798:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7813110351562 2 543.822547 1085.63054 NaN NaN NaN NaN NaN NaN NaN 163.25 1 158.13 157.63 158.63 -5.1142 0 0 0 0.18489 1 31758 31758 17.113 15.199 1 52289 10435 34761 34782 51159 51159 0.09115041348741215 VSNQQTPM 8 Unmodified _VSNQQTPM_ 0 0 0 REV__ENST00000547785.2_1_14:20146241-20147198:+|nuORF REV__ENST00000547785.2_1_14:20146241-20147198:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.0169372558594 3 302.144615 903.412016 NaN NaN NaN NaN NaN NaN NaN 45.278 1 45.278 44.778 45.778 0 0 0 0 0.21486 1 8508 8508 0.40072 0 1 + 52290 22908 34762 34783 51160 51160 -0.04355311285064545 VSNYQKIQ 8 Unmodified _VSNYQKIQ_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2643127441406 2 490.263999 978.513445 0.064146 3.1448E-05 0.10466 5.1312E-05 0.16881 8.2761E-05 490.2640316435626 59.279 1.7152 56.368 55.784 57.5 -2.9105 129 48 4 0 0 0 0.49114 1 11339 11339 28.487 3.0875 1 42586000 + 52291 17006 34763 34784 51161 51161 0.023328834091330464 VSNYQKIQ 8 Unmodified _VSNYQKIQ_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640075683594 2 490.263999 978.513445 0.17497 8.5784E-05 0.35871 0.00017586 0.53368 0.00026164 490.26396477223466 59.697 1.4825 56.384 55.742 57.224 -3.3139 148 41 6 0 0 0 0.52597 1 11042 11042 26.884 5.137 1 37594000 + 52292 17006 34763 34784 51162 51162 0.023328834091330464 VSNYQKIQ 8 Unmodified _VSNYQKIQ_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26416015625 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 0.49114 1 11084 11084 28.487 0 1 39769000 + 52293 17006 34763 34784 51163 51163 0.023328834091330464 VSPAVGGS 8 Unmodified _VSPAVGGS_ 0 0 0 nc|ENSG00000178607|O75460-2|ERN1 nc|ENSG00000178607|O75460-2|ERN1 nc|ENSG00000178607|O75460-2|ERN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.0951232910156 2 337.179404 672.344254 NaN NaN NaN NaN NaN NaN NaN 4.0245 1 2.9845 2.4845 3.4845 -1.04 0 0 0 0.21486 1 5 5 0.69038 0 1 52294 12487 34764 34785 51164 51164 -0.0050239315355611325 VSPAVGGS 8 Unmodified _VSPAVGGS_ 0 0 0 nc|ENSG00000178607|O75460-2|ERN1 nc|ENSG00000178607|O75460-2|ERN1 nc|ENSG00000178607|O75460-2|ERN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.0434875488281 2 337.179404 672.344254 NaN NaN NaN NaN NaN NaN NaN 4.1693 1 3.1294 2.6294 3.6294 -1.04 0 0 0 0.21486 1 42 42 0.69038 0 1 52295 12487 34764 34785 51165 51165 -0.0050239315355611325 VSPDQSKI 8 Unmodified _VSPDQSKI_ 0 0 0 REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|13|1|sense;REV__nc|ENSG999|O00370|L1_ORF2 REV__nc|ENSG999|O00370|L1_ORF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23553466796875 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 71.389 1 67.922 67.422 68.422 -3.467 0 0 0 0.20896 1 13531 13531 18.135 4.6271 1 + 52296 24337;23771 34765 34786 51166 51166 0.019015056264720442 VSPDQSKI 8 Unmodified _VSPDQSKI_ 0 0 0 REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|13|1|sense;REV__nc|ENSG999|O00370|L1_ORF2 REV__nc|ENSG999|O00370|L1_ORF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2358093261719 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 71.616 1 68.077 67.577 68.577 -3.5385 0 0 0 0.20462 1 13575 13575 21.747 4.8044 1 + 52297 24337;23771 34765 34786 51167 51167 0.019015056264720442 VSPEEGAHVY 10 Unmodified _VSPEEGAHVY_ 0 0 0 EPS8L1|p.R682H|1|0.14|ENSG00000131037|chr19:55087395-55087395|G/A|missense_variant EPS8L1|p.R682H|1|0.14|ENSG00000131037|chr19:55087395-55087395|G/A|missense_variant EPS8L1|p.R682H|1|0.14|ENSG00000131037|chr19:55087395-55087395|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7919921875 2 544.256371 1086.49819 0.26863 0.00014621 -0.050557 -2.7516E-05 0.21808 0.00011869 544.2562682479962 65.96 0.59224 62.502 62.278 62.87 -3.4581 43 16 4 0 0 0 0.54036 1 12330 12330 37.974 1.847 1 6211700 52298 11777 34766 34787 51168 51168 -0.04160028178716857 VSPGFDHD 8 Unmodified _VSPGFDHD_ 0 0 0 REV__tr|U7SWN0|U7SWN0_FUSNUDUF4037domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01106PE=4SV=1 REV__tr|U7SWN0|U7SWN0_FUSNUDUF4037domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01106PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2362365722656 2 437.1905 872.366446 NaN NaN NaN NaN NaN NaN NaN 70.566 1 66.986 66.486 67.486 -3.5798 0 0 0 0.21486 1 13301 13301 8.5933 0.68312 1 + 52299 25204 34767 34788 51169 51169 -0.0748421347581143 VSPGGGGP 8 Unmodified _VSPGGGGP_ 0 0 0 REV__ENST00000374694.2_1_10:35930861-35931041:-|nuORF REV__ENST00000374694.2_1_10:35930861-35931041:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1752624511719 2 314.158471 626.30239 NaN NaN NaN NaN NaN NaN NaN 97.942 1 93.673 93.173 94.173 -4.2692 0 0 0 0.21486 1 18716 18716 5.7604 0 1 + 52300 21056 34768 34789 51170 51170 -0.02570948842094367 VSPHGSPYI 9 Unmodified _VSPHGSPYI_ 0 0 0 REV__ENST00000489940.5_3_X:48367869-48368219:+|nuORF REV__ENST00000489940.5_3_X:48367869-48368219:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7237854003906 2 478.745442 955.476331 0.034078 1.6315E-05 0.18928 9.0616E-05 0.22335 0.00010693 478.7454597099775 38.312 0.71106 38.312 38.001 38.712 0 45 19 3 0 0 0 0.84208 1 7167 7167 11.64 2.2929 1 12849000 + 52301 22300 34769 34790 51171 51171 -0.003187881366329748 VSPPPLPG 8 Unmodified _VSPPPLPG_ 0 0 0 TNRC6C|p.N615Kfs*8|1|0.25|ENSG00000078687|chr17:78050898-78050899|-/A|frameshift_variant;TNRC6C|p.N615Mfs*45|3|0.36|ENSG00000078687|chr17:78050899-78050899|A/-|frameshift_variant;TNRC6C|p.E657Rfs*3|1|0.32|ENSG00000078687|chr17:78051026-78051026|G/-|frameshift_variant;TNRC6C|p.K926Rfs*3|1|0.18|ENSG00000078687|chr17:78067919-78067919|A/-|frameshift_variant;TNRC6C|p.G923Dfs*6|2|0.46|ENSG00000078687|chr17:78067906-78067906|A/-|frameshift_variant;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C TNRC6C|p.N615Kfs*8|1|0.25|ENSG00000078687|chr17:78050898-78050899|-/A|frameshift_variant TNRC6C|p.N615Kfs*8|1|0.25|ENSG00000078687|chr17:78050898-78050899|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 382.05609130859375 2 382.221072 762.42759 NaN NaN NaN NaN NaN NaN NaN 133.6 1 128.96 128.46 129.46 -4.6399 0 0 0 0.21486 1 26344 26344 0.79363 0 1 52302 1584 34770 34791 51172 51172 0.03687343294291168 VSPPQYPDY 9 Unmodified _VSPPQYPDY_ 0 0 0 ENSG00000165556|ENST00000381020|CDX2 ENSG00000165556|ENST00000381020|CDX2 ENSG00000165556|ENST00000381020|CDX2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2869262695312 2 533.248015 1064.48148 NaN NaN NaN NaN NaN NaN NaN 102.45 1 98.428 97.928 98.928 -4.0212 0 0 0 0.23508 1 19689 19689 12.532 1.7076 1 52303 5639 34771 34792 51173 51173 -0.0481852906466429 VSPRRQLP 8 Unmodified _VSPRRQLP_ 0 0 0 REV__EPS8L1|p.G206Afs*54|1|0.23|ENSG00000131037|chr19:55081330-55081336|GCGGGGC/-|frameshift_variant REV__EPS8L1|p.G206Afs*54|1|0.23|ENSG00000131037|chr19:55081330-55081336|GCGGGGC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.1636962890625 3 318.194409 951.561398 NaN NaN NaN NaN NaN NaN NaN 32.121 1 32.121 31.621 32.621 0 0 0 0 0.21486 1 5824 5824 0.45834 0 1 + 52304 16050 34772 34793 51174 51174 0.08368002119857465 VSPWDSPLKL 10 Unmodified _VSPWDSPLKL_ 0 0 0 ENST00000554032.1_1_14:71276930-71281887:+|nuORF ENST00000554032.1_1_14:71276930-71281887:+|nuORF ENST00000554032.1_1_14:71276930-71281887:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2134094238281 3 381.213246 1140.61791 -0.33909 -0.00012927 0.79607 0.00030347 0.45698 0.00017421 381.2135530423276 18.081 0.35501 16.77 16.58 16.935 -1.3109 18 9 3 0 0 0 0.744 1 2953 2953 3.5871 0 1 1329200 52305 11213 34773 34794 51175 51175 0.053225851658453394 VSQGLASNMGT 11 Unmodified _VSQGLASNMGT_ 0 0 0 REV__ENSG00000168916|ENST00000513986|ZNF608 REV__ENSG00000168916|ENST00000513986|ZNF608 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2660522460938 2 532.755681 1063.49681 0.53783 0.00028653 -0.58346 -0.00031084 -0.045632 -2.4311E-05 532.755088525291 31.694 0.28076 29.546 29.338 29.619 -2.1483 10 7 2 0 0 0 0.68348 1 5447 5447 12.873 0.63195 1 370580 + 52306 18066 34774 34795 51176 51176 -0.032399855391076926 VSQGLASNMGT 11 Unmodified _VSQGLASNMGT_ 0 0 0 REV__ENSG00000168916|ENST00000513986|ZNF608 REV__ENSG00000168916|ENST00000513986|ZNF608 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 532.755681 1063.49681 0.68441 0.00036462 -0.85439 -0.00045518 -0.16998 -9.056E-05 532.7552403207316 31.602 0.21413 29.576 29.409 29.623 -2.0264 0.014782 -0.00022057 NaN 12.873 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 641930 + 52307 18066 34774 34795 -0.032399855391076926 VSQHYKAS 8 Unmodified _VSQHYKAS_ 0 0 0 ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1;ENST00000485714.1_1_1:46657733-46659087:-|nuORF;ENST00000396420.7_1_1:46654944-46659087:-|nuORF ENSG00000085998|ENST00000371984|POMGNT1 ENSG00000085998|ENST00000371984|POMGNT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.243896484375 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 118.51 1 118.51 118.01 119.01 0 0 0 0 0.21486 1 23343 23343 12.532 3.1841 1 52308 1687 34775 34796 51177 51177 -0.006559587964261482 VSQHYKAS 8 Unmodified _VSQHYKAS_ 0 0 0 ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1;ENST00000485714.1_1_1:46657733-46659087:-|nuORF;ENST00000396420.7_1_1:46654944-46659087:-|nuORF ENSG00000085998|ENST00000371984|POMGNT1 ENSG00000085998|ENST00000371984|POMGNT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2347717285156 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 123.16 1 118.56 118.06 119.06 -4.5926 0 0 0 0.21171 1 23707 23707 15.847 0 1 52309 1687 34775 34796 51178 51178 -0.006559587964261482 VSQIGHQQVS 10 Unmodified _VSQIGHQQVS_ 0 0 0 REV__SH3TC2|p.A701V|1|0.08|ENSG00000169247|chr5:149027630-149027630|G/A|missense_variant REV__SH3TC2|p.A701V|1|0.08|ENSG00000169247|chr5:149027630-149027630|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.279296875 2 541.783087 1081.55162 -0.22021 -0.00011931 -3.6235 -0.0019631 -3.8437 -0.0020824 541.7815352308256 109.43 0.3553 105.06 104.89 105.24 -4.3776 13 9 2 0 0 0 0.35759 1 21591 21591 37.075 9.8514 1 830830 + 52310 24611 34776 34797 51179 51179 0.014107693237974672 VSQLQPQSA 9 Unmodified _VSQLQPQSA_ 0 0 0 REV__ENSG00000100053|ENST00000215855|CRYBB3 REV__ENSG00000100053|ENST00000215855|CRYBB3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7327880859375 2 479.253631 956.49271 0.29583 0.00014178 -0.26147 -0.00012531 0.034366 1.647E-05 479.25325049080476 72.139 0.14699 68.512 68.442 68.589 -3.6275 5 3 2 0 0 0 0.81703 1 13608 13608 14.838 4.0388 1 345840 + 52311 14660 34777 34798 51180 51180 0.012722930294785328 VSRCEAIGRP 10 Unmodified _VSRCEAIGRP_ 0 0 0 sp|Q6SW89|UL43_HCMVMTegumentproteinUL43OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL43PE=3SV=1;sp|P16781|UL43_HCMVATegumentproteinUL43OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL43PE=3SV=2 sp|Q6SW89|UL43_HCMVMTegumentproteinUL43OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL43PE=3SV=1 sp|Q6SW89|UL43_HCMVMTegumentproteinUL43OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL43PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 544.328857421875 2 544.287482 1086.56041 NaN NaN NaN NaN NaN NaN NaN 164.75 1 159.96 159.46 160.46 -4.7898 0 0 0 0.22588 1 32948 32948 10.074 0.72649 1 52312 25756 34778 34799 51181 51181 0.020594196886122518 VSRKKVSK 8 Unmodified _VSRKKVSK_ 0 0 0 REV__ENSG00000152266|ENST00000282091|PTH REV__ENSG00000152266|ENST00000282091|PTH MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.23260498046875 3 311.206426 930.597449 NaN NaN NaN NaN NaN NaN NaN 64.605 1 61.608 61.108 62.108 -2.9975 0 0 0 0.21486 1 12498 12498 0.40072 0 1 + 52313 17103 34779 34800 51182 51182 0.12937459296699672 VSRKLRRV 8 Unmodified _VSRKLRRV_ 0 0 0 REV__ENSG00000227234|ENST00000449283|SPANXB1 REV__ENSG00000227234|ENST00000449283|SPANXB1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 507.337646484375 2 507.338167 1012.66178 NaN NaN NaN NaN NaN NaN NaN 156.31 1 156.31 155.81 156.81 0 0 0 0 0.23749 1 31358 31358 0.0082765 0 1 + 52314 19731 34780 34801 51183 51183 0.1559565917349346 VSRLQLRR 8 Unmodified _VSRLQLRR_ 0 0 0 REV__ENST00000310758.8_1_7:37488508-37488721:-|nuORF REV__ENST00000310758.8_1_7:37488508-37488721:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.1868591308594 3 343.220958 1026.64105 NaN NaN NaN NaN NaN NaN NaN 51.699 1 48.647 48.147 49.147 -3.0517 0 0 0 0.2386 1 9530 9530 0.0082765 0 1 + 52315 20482 34781 34802 51184 51184 0.12879068793859005 VSRLRTVL 8 Unmodified _VSRLRTVL_ 0 0 0 REV__nc|ENSG00000171798|Q76NI1-4|KNDC1 REV__nc|ENSG00000171798|Q76NI1-4|KNDC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1993713378906 3 315.206426 942.597449 NaN NaN NaN NaN NaN NaN NaN 96.625 1 92.527 92.027 93.027 -4.0978 0 0 0 0.21486 1 18952 18952 1.8442 0 1 + 52316 24169 34782 34803 51185 51185 0.12385459296706358 VSRNLGLPP 9 Unmodified _VSRNLGLPP_ 0 0 0 nc|ENSG00000188676|Q6ZQW0-2|IDO2;IDO2|p.E288Rfs*4|1|0.05|ENSG00000188676|chr8:40013706-40013707|-/A|frameshift_variant;ENSG00000188676|ENST00000502986|IDO2 nc|ENSG00000188676|Q6ZQW0-2|IDO2 nc|ENSG00000188676|Q6ZQW0-2|IDO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.1910095214844 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 33.954 1 31.738 31.238 32.238 -2.2158 0 0 0 0.23508 1 5934 5934 1.1933 0.12188 1 52317 7187 34783 34804 51186 51186 0.07245180025711306 VSRNLGLPP 9 Unmodified _VSRNLGLPP_ 0 0 0 nc|ENSG00000188676|Q6ZQW0-2|IDO2;IDO2|p.E288Rfs*4|1|0.05|ENSG00000188676|chr8:40013706-40013707|-/A|frameshift_variant;ENSG00000188676|ENST00000502986|IDO2 nc|ENSG00000188676|Q6ZQW0-2|IDO2 nc|ENSG00000188676|Q6ZQW0-2|IDO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 318.2280578613281 3 318.190665 951.550165 NaN NaN NaN NaN NaN NaN NaN 34.039 1 31.823 31.323 32.323 -2.2158 0 0 0 0.23508 1 5951 5951 1.1933 0.12188 1 52318 7187 34783 34804 51187 51187 0.07245180025711306 VSRPNIDSI 9 Unmodified _VSRPNIDSI_ 0 0 0 REV__nc|ENSG00000163629|Q12923-2|PTPN13 REV__nc|ENSG00000163629|Q12923-2|PTPN13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 334.2198791503906 3 334.185579 999.534909 NaN NaN NaN NaN NaN NaN NaN 95.341 1 91.15 90.65 91.65 -4.1911 0 0 0 0.23508 1 18195 18195 2.7352 0 1 + 52319 17593 34784 34805 51188 51188 0.03512268437862076 VSRPVGPVQV 10 Unmodified _VSRPVGPVQV_ 0 0 0 ENST00000596769.1_1_19:53510963-53514048:+|nuORF ENST00000596769.1_1_19:53510963-53514048:+|nuORF ENST00000596769.1_1_19:53510963-53514048:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 346.8788146972656 3 346.541586 1036.60293 0.2407 8.3414E-05 -0.22395 -7.7609E-05 0.016753 5.8057E-06 346.5414364300446 65.556 0.56234 62.098 61.893 62.455 -3.4581 29 15 2 0 0 0 0.41731 1 12226 12226 0.51642 0 1 5183600 52320 11670 34785 34806 51189 51189 0.08609138088513646 VSRWQWRRRRR 11 Unmodified _VSRWQWRRRRR_ 0 0 0 REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7799682617188 3 547.985569 1640.93488 NaN NaN NaN NaN NaN NaN NaN 95.405 1 91.214 90.714 91.714 -4.1911 0 0 0 0.22632 1 18207 18207 0 0 1 + 52321 22250 34786 34807 51190 51190 0.1400465561641795 VSSALQFLAFP 11 Unmodified _VSSALQFLAFP_ 0 0 0 ENST00000586299.1_1_17:76673107-76673293:-|nuORF ENST00000586299.1_1_17:76673107-76673293:-|nuORF ENST00000586299.1_1_17:76673107-76673293:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2676391601562 2 590.324057 1178.63356 NaN NaN NaN NaN NaN NaN NaN 115.23 1 115.23 114.73 115.73 0 0 0 0 0.22632 1 22676 22676 8.4443 1.8139 1 52322 11548 34787 34808 51191 51191 0.05138871682879653 VSSASGGG 8 Unmodified _VSSASGGG_ 0 0 0 REV__ENST00000485288.6_1_X:48367409-48368014:+|nuORF REV__ENST00000485288.6_1_X:48367409-48368014:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.20513916015625 2 311.145561 620.276569 NaN NaN NaN NaN NaN NaN NaN 8.6802 1 7.8859 7.3859 8.3859 -0.79424 0 0 0 0.21486 1 927 927 0 0 1 + 52323 22218 34788 34809 51192 51192 -0.0487584308436908 VSSDQVHCS 9 Unmodified _VSSDQVHCS_ 0 0 0 nc|ENSG00000164393|Q8IZF7|ADGRF2P nc|ENSG00000164393|Q8IZF7|ADGRF2P nc|ENSG00000164393|Q8IZF7|ADGRF2P MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2347717285156 2 481.205824 960.397095 NaN NaN NaN NaN NaN NaN NaN 86.809 1 86.809 86.309 87.309 0 0 0 0 0.23508 1 16941 16941 10.824 1.4765 1 52324 12423 34789 34810 51193 51193 -0.08468803153061799 VSSFQQAY 8 Unmodified _VSSFQQAY_ 0 0 0 RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant;RLF|p.Y1419Ifs*6|1|0.31|ENSG00000117000|chr1:40238952-40238952|T/-|frameshift_variant;RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant;RLF|p.N1741Ifs*21|1|0.18|ENSG00000117000|chr1:40239919-40239919|A/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF;RLF|p.L337Wfs*10|1|0.4|ENSG00000117000|chr1:40231574-40231574|T/-|frameshift_variant;RLF|p.H728Tfs*20|1|0.42|ENSG00000117000|chr1:40236880-40236880|T/-|frameshift_variant RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24884033203125 2 465.2218 928.429047 NaN NaN NaN NaN NaN NaN NaN 46.123 1 43.282 42.782 43.782 -2.8409 0 0 0 0.21039 1 8700 8700 16.942 0 1 52325 2968 34790 34811 51194 51194 -0.03803067407625349 VSSHCVSVV 9 Unmodified _VSSHCVSVV_ 0 0 0 REV__ENST00000599417.1_1_19:39888611-39888992:+|nuORF REV__ENST00000599417.1_1_19:39888611-39888992:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2381896972656 2 458.731477 915.448402 -0.1304 -5.982E-05 -2.6318 -0.0012073 -2.7622 -0.0012671 458.7296626865542 67.365 0.28017 64.256 64.107 64.387 -3.1086 10 7 2 0 0 0 0.69192 1 13051 13051 20.454 3.5113 1 416840 + 52326 23401 34791 34812 51195 51195 -0.012704343883456204 VSSHWCEG 8 Unmodified _VSSHWCEG_ 0 0 0 ENSG00000214978|ENST00000399363|GSG1L2 ENSG00000214978|ENST00000399363|GSG1L2 ENSG00000214978|ENST00000399363|GSG1L2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 302.031494140625 3 302.125444 903.354502 NaN NaN NaN NaN NaN NaN NaN 49.107 1 46.108 45.608 46.608 -2.999 0 0 0 0.21486 1 8974 8974 1.6526 0 1 52327 7737 34792 34813 51196 51196 -0.10104153490635781 VSSIAAFCPSP 11 Unmodified _VSSIAAFCPSP_ 0 0 0 DHRS4L2|p.S174C|1|0.01|ENSG00000187630|chr14:24001073-24001073|A/T|missense_variant DHRS4L2|p.S174C|1|0.01|ENSG00000187630|chr14:24001073-24001073|A/T|missense_variant DHRS4L2|p.S174C|1|0.01|ENSG00000187630|chr14:24001073-24001073|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2124938964844 3 360.179437 1077.51648 NaN NaN NaN NaN NaN NaN NaN 59.204 1 55.89 55.39 56.39 -3.3139 0 0 0 0.23698 1 11008 11008 1.1098 0 1 52328 827 34793 34814 51197 51197 -0.019176095283455652 VSSKGSAN 8 Unmodified _VSSKGSAN_ 0 0 0 REV__tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1 REV__tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21240234375 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 87.694 1 83.699 83.199 84.199 -3.9953 0 0 0 0.2396 1 16701 16701 0 0 1 + 52329 25135 34794 34815 51198 51198 -0.012719096132059349 VSSKTTLQY 9 Unmodified _VSSKTTLQY_ 0 0 0 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant;NAV3|p.L1995Sfs*5|1|0.05|ENSG00000067798|chr12:78188704-78188705|-/T|frameshift_variant;NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3;nc|ENSG00000067798|Q8IVL0-3|NAV3 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 513.2257080078125 2 513.776939 1025.53933 -0.12124 -6.2291E-05 0.20626 0.00010597 0.085019 4.3681E-05 513.7769404469306 46.247 0.55023 43.381 43.131 43.681 -2.8666 32 15 3 0 0 0 0.54058 1 8385 8385 12.241 12.241 1 3736100 52330 1393 34795 34816 51199 51199 0.027577328607549134 VSSKTTLQY 9 Unmodified _VSSKTTLQY_ 0 0 0 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant;NAV3|p.L1995Sfs*5|1|0.05|ENSG00000067798|chr12:78188704-78188705|-/T|frameshift_variant;NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3;nc|ENSG00000067798|Q8IVL0-3|NAV3 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 513.776939 1025.53933 0.45103 0.00023173 -0.30861 -0.00015856 0.14241 7.3169E-05 513.7766883332049 43.303 0.48095 43.303 43.054 43.535 0 -0.078648 -0.00057444 NaN 12.241 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3038200 52331 1393 34795 34816 0.027577328607549134 VSSKTTLQY 9 Unmodified _VSSKTTLQY_ 0 0 0 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant;NAV3|p.L1995Sfs*5|1|0.05|ENSG00000067798|chr12:78188704-78188705|-/T|frameshift_variant;NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3;nc|ENSG00000067798|Q8IVL0-3|NAV3 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 513.776939 1025.53933 -0.17792 -9.1412E-05 0.53933 0.0002771 0.36141 0.00018568 513.7769557010408 46.263 0.59018 43.422 43.102 43.693 -2.8409 0.04047 0.00029687 NaN 12.241 38 16 4 NaN NaN NaN NaN 0 NaN NaN 0 3652000 52332 1393 34795 34816 0.027577328607549134 VSSKTTLQY 9 Unmodified _VSSKTTLQY_ 0 0 0 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant;NAV3|p.L1995Sfs*5|1|0.05|ENSG00000067798|chr12:78188704-78188705|-/T|frameshift_variant;NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3;nc|ENSG00000067798|Q8IVL0-3|NAV3 NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 513.776939 1025.53933 -0.52921 -0.0002719 0.64641 0.00033211 0.1172 6.0214E-05 513.7771115036047 46.286 0.62343 43.42 43.138 43.761 -2.8653 0.038937 0.0004069 NaN 12.241 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2851100 52333 1393 34795 34816 0.027577328607549134 VSSLPKREY 9 Unmodified _VSSLPKREY_ 0 0 0 REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.201171875 3 360.201229 1077.58186 -0.34917 -0.00012577 0.53242 0.00019178 0.18325 6.6009E-05 360.20134004286604 48.532 0.51903 45.663 45.382 45.901 -2.869 28 14 3 0 0 0 0.77797 2 9191 9191;9210 2.7352 0 1 2552300 + 52334 17671 34796 34817 51200;51201 51200 0.0461712798901317 VSSLPKREY 9 Unmodified _VSSLPKREY_ 0 0 0 REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012023925781 3 360.201229 1077.58186 0.020572 7.41E-06 0.17546 6.3199E-05 0.19603 7.0609E-05 360.20121577845765 48.645 0.49354 45.646 45.368 45.861 -2.999 21 13 2 0 0 0 0.77797 1 8895 8895 2.7352 0 1 1928400 + 52335 17671 34796 34817 51202 51202 0.0461712798901317 VSSLPKREY 9 Unmodified _VSSLPKREY_ 0 0 0 REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant REV__PRIMPOL|p.L523*|1|0.1|ENSG00000164306|chr4:184694659-184694659|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201171875 3 360.201229 1077.58186 -0.76808 -0.00027666 0.8524 0.00030704 0.084322 3.0373E-05 360.2014583452999 48.627 0.45159 45.677 45.436 45.888 -2.9499 30 12 3 0 0 0 0.77797 1 8917 8917 2.7352 0 1 1625000 + 52336 17671 34796 34817 51203 51203 0.0461712798901317 VSSLYRTPG 9 Unmodified _VSSLYRTPG_ 0 0 0 nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3 nc|ENSG00000240184|Q9UN70-2|PCDHGC3 nc|ENSG00000240184|Q9UN70-2|PCDHGC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26397705078125 2 490.263999 978.513445 0.0073845 3.6203E-06 0.13078 6.4117E-05 0.13816 6.7737E-05 490.264027526858 56.438 1.1201 56.438 55.973 57.093 0 97 31 4 0 0 0 0.23715 1 10775 10775 4.477 1.1662 1 20526000 52337 7842 34797 34818 51204 51204 0.02332883409144415 VSSLYRTPG 9 Unmodified _VSSLYRTPG_ 0 0 0 nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3 nc|ENSG00000240184|Q9UN70-2|PCDHGC3 nc|ENSG00000240184|Q9UN70-2|PCDHGC3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2644348144531 2 490.263999 978.513445 0.17497 8.5784E-05 0.35871 0.00017586 0.53368 0.00026164 490.26396477223466 59.697 1.4825 56.384 55.742 57.224 -3.3139 148 41 6 0 0 0 0.35556 1 11232 11232 1.6919 1.1755 1 37594000 52338 7842 34797 34818 51205 51205 0.02332883409144415 VSSPPPTIM 9 Unmodified _VSSPPPTIM_ 0 0 0 nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000490566.1_1_2:218669184-218678576:-|nuORF nc|ENSG00000079308|Q9HBL0-1|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16558837890625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 144.47 1 144.47 143.97 144.97 0 0 0 0 0.19624 1 28865 28865 0 0 1 52339 12238 34798 34819 51206 51206 0.006916204142157767 VSSPPPYTAY 10 Unmodified _VSSPPPYTAY_ 0 0 0 nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2 nc|ENSG00000115762|Q96CS7-5|PLEKHB2 nc|ENSG00000115762|Q96CS7-5|PLEKHB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2637329101562 2 541.263665 1080.51278 0.23557 0.0001275 -0.50553 -0.00027363 -0.26997 -0.00014612 541.2632871978684 79.016 0.98419 75.506 75.029 76.013 -3.5102 44 27 2 0 0 0 0.63858 1 15384 15384 17.113 1.2657 1 1142300 52340 2883 34799 34820 51207 51207 -0.02425956030560883 VSSPPPYTAY 10 Unmodified _VSSPPPYTAY_ 0 0 0 nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2 nc|ENSG00000115762|Q96CS7-5|PLEKHB2 nc|ENSG00000115762|Q96CS7-5|PLEKHB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2633056640625 2 541.263665 1080.51278 0.01516 8.2058E-06 0.052112 2.8206E-05 0.067273 3.6412E-05 541.2637370892986 79.385 0.94772 75.581 74.984 75.932 -3.8048 35 26 2 0 0 0 0.67319 1 15054 15054 13.906 1.3745 1 1213200 52341 2883 34799 34820 51208 51208 -0.02425956030560883 VSSPPPYTAY 10 Unmodified _VSSPPPYTAY_ 0 0 0 nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2 nc|ENSG00000115762|Q96CS7-5|PLEKHB2 nc|ENSG00000115762|Q96CS7-5|PLEKHB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2635498046875 2 541.263665 1080.51278 0.032014 1.7328E-05 0.51422 0.00027833 0.54624 0.00029566 541.2639080887968 79.206 0.83813 75.53 74.851 75.69 -3.676 37 23 2 0 0 0 0.63858 1 15056 15056 17.113 0.1706 1 1639700 52342 2883 34799 34820 51209 51209 -0.02425956030560883 VSSRERHRP 9 Unmodified _VSSRERHRP_ 0 0 0 DNMT3B|p.Y188Tfs*4|1|0.32|ENSG00000088305|chr20:32787354-32787354|C/-|frameshift_variant;DNMT3B|p.L454Sfs*136|2|0.27|ENSG00000088305|chr20:32796845-32796845|G/-|frameshift_variant;nc|ENSG00000088305|Q9UBC3-4|DNMT3B;nc|ENSG00000088305|Q9UBC3-3|DNMT3B;nc|ENSG00000088305|Q9UBC3-5|DNMT3B;nc|ENSG00000088305|Q9UBC3-2|DNMT3B;nc|ENSG00000088305|Q9UBC3-6|DNMT3B;ENSG00000088305|ENST00000328111|DNMT3B DNMT3B|p.Y188Tfs*4|1|0.32|ENSG00000088305|chr20:32787354-32787354|C/-|frameshift_variant DNMT3B|p.Y188Tfs*4|1|0.32|ENSG00000088305|chr20:32787354-32787354|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2166748046875 3 375.207489 1122.60064 NaN NaN NaN NaN NaN NaN NaN 106.29 1 106.29 105.79 106.79 0 0 0 0 0.19657 1 20895 20895 4.897 0 1 52343 878 34800 34821 51210 51210 0.04424102403413599 VSSRSGTPGSF 11 Unmodified _VSSRSGTPGSF_ 0 0 0 REV__ENST00000469300.6_1_2:128400496-128412764:-|nuORF REV__ENST00000469300.6_1_2:128400496-128412764:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2662353515625 2 541.26727 1080.51999 -0.73179 -0.00039609 0.089059 4.8205E-05 -0.64273 -0.00034789 541.2671220267158 20.769 0.6938 19.048 18.659 19.353 -1.7211 30 19 2 0 0 0 0.5544 1 3211 3211 20.415 2.2682 1 1078600 + 52344 22008 34801 34822 51211 51211 -0.01705223430121805 VSSSAKKK 8 Unmodified _VSSSAKKK_ 0 0 0 nc|ENSG00000182077|Q3KNS1|PTCHD3 nc|ENSG00000182077|Q3KNS1|PTCHD3 nc|ENSG00000182077|Q3KNS1|PTCHD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 417.2220458984375 2 417.75581 833.497067 0.23285 9.7276E-05 -0.9486 -0.00039628 -0.71575 -0.00029901 417.75539307235925 66.222 0.31243 62.726 62.627 62.939 -3.4965 12 8 2 0 0 0 1.0271 1 12418 12418 0.69038 0 1 620420 52345 12499 34802 34823 51212 51212 0.07365802243043618 VSSSKGKG 8 Unmodified _VSSSKGKG_ 0 0 0 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2108154296875 2 375.211235 748.407917 NaN NaN NaN NaN NaN NaN NaN 117.54 1 113.13 112.63 113.63 -4.4088 0 0 0 0.2396 1 22622 22622 0 0 1 52346 7466 34803 34824 51213 51213 0.023649672835290403 VSSSLRSLSF 10 Unmodified _VSSSLRSLSF_ 0 0 0 REV__ENSG00000172938|ENST00000309106|MRGPRD REV__ENSG00000172938|ENST00000309106|MRGPRD MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.131103515625 3 361.532868 1081.57677 -0.34571 -0.00012499 0.79841 0.00028865 0.4527 0.00016367 361.532992496205 48.426 0.48511 45.557 45.382 45.868 -2.869 30 13 3 0 0 0 1.1231 1 9216 9216 0.26539 0 1 1421600 + 52347 18317 34804 34825 51214 51214 0.03924824126352178 VSSTSIYF 8 Unmodified _VSSTSIYF_ 0 0 0 REV__L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|53|3|anti-sense REV__L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|53|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 452.2480163574219 2 452.226551 902.438549 NaN NaN NaN NaN NaN NaN NaN 65.766 1 62.483 61.983 62.983 -3.2832 0 0 0 0.21486 1 12368 12368 10.183 0 1 + 52348 23750 34805 34826 51215 51215 -0.01657299122086897 VSSTTASF 8 Unmodified _VSSTTASF_ 0 0 0 nc|ENSG00000151623|P08235-2|NR3C2;nc|ENSG00000151623|P08235-4|NR3C2;NR3C2|p.L875Cfs*4|1|0.38|ENSG00000151623|chr4:148120175-148120175|A/-|frameshift_variant;ENSG00000151623|ENST00000358102|NR3C2;nc|ENSG00000151623|P08235-3|NR3C2 nc|ENSG00000151623|P08235-2|NR3C2 nc|ENSG00000151623|P08235-2|NR3C2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 400.03857421875 2 400.195251 798.375948 NaN NaN NaN NaN NaN NaN NaN 95.297 1 95.297 94.797 95.797 0 0 0 0 0.21486 1 18668 18668 2.5775 0 1 52349 4878 34806 34827 51216 51216 -0.03130445190276987 VSSTVSGL 8 Unmodified _VSSTVSGL_ 0 0 0 ARHGEF6|p.T559Nfs*7|1|0.45|ENSG00000129675|chrX:136680759-136680760|-/T|frameshift_variant;ENSG00000129675|ENST00000250617|ARHGEF6 ARHGEF6|p.T559Nfs*7|1|0.45|ENSG00000129675|chrX:136680759-136680760|-/T|frameshift_variant ARHGEF6|p.T559Nfs*7|1|0.45|ENSG00000129675|chrX:136680759-136680760|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2137451171875 2 375.205618 748.396684 NaN NaN NaN NaN NaN NaN NaN 83.932 1 80.324 79.824 80.824 -3.6079 0 0 0 0.23749 1 16407 16407 0.0082765 0 1 52350 215 34807 34828 51217 51217 0.012421451893942503 VSSVNFIY 8 Unmodified _VSSVNFIY_ 0 0 0 REV__SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant REV__SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 118.78 1 114.37 113.87 114.87 -4.4088 0 0 0 0.2386 1 22858 22858 0.62683 0 1 + 52351 24740 34808 34829 51218 51218 0.00354693631857117 VSTAKCQL 8 Unmodified _VSTAKCQL_ 0 0 0 ENST00000405142.1_1_16:4744898-4745177:+|nuORF;ENSG00000168101|ENST00000304301|NUDT16L1 ENST00000405142.1_1_16:4744898-4745177:+|nuORF ENST00000405142.1_1_16:4744898-4745177:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2477111816406 2 425.228571 848.442588 NaN NaN NaN NaN NaN NaN NaN 80.892 1 80.892 80.392 81.392 0 0 0 0 0.23899 1 15751 15751 1.3295 0 1 52352 5880 34809 34830 51219 51219 0.012304670999583323 VSTAKINSIGP 11 Unmodified _VSTAKINSIGP_ 0 0 0 REV__nc|ENSG00000169551|Q8WUE5-2|CT55 REV__nc|ENSG00000169551|Q8WUE5-2|CT55 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.770751953125 2 543.811313 1085.60807 NaN NaN NaN NaN NaN NaN NaN 162.89 1 157.7 157.2 158.2 -5.1878 0 0 0 0.22683 1 31656 31656 10.8 0.72558 1 + 52353 18110 34810 34831 51220 51220 0.06869397160471635 VSTGERVNV 9 Unmodified _VSTGERVNV_ 0 0 0 REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant REV__HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.23712158203125 2 480.759081 959.503609 0.25031 0.00012034 0.14327 6.8878E-05 0.39358 0.00018922 480.7591904516267 48.967 0.84739 48.967 48.523 49.37 0 59 23 4 0 0 0 0.31673 1 9271 9271 39.95 0 1 14763000 + 52354 16717 34811 34832 51221 51221 0.022236954037566647 VSTGGDLHHSA 11 Unmodified _VSTGGDLHHSA_ 0 0 0 REV__ENST00000593460.1_1_19:18119032-18119587:+|nuORF REV__ENST00000593460.1_1_19:18119032-18119587:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2587890625 2 540.757069 1079.49959 0.42375 0.00022914 -0.63688 -0.0003444 -0.21313 -0.00011525 540.7565515121156 28.662 0.72958 26.666 26.134 26.864 -1.9962 27 20 2 0 0 0 0.57511 1 4851 4851 19.362 0 1 1172900 + 52355 23360 34812 34833 51222 51222 -0.03698394089951762 VSTGGDLHHSA 11 Unmodified _VSTGGDLHHSA_ 0 0 0 REV__ENST00000593460.1_1_19:18119032-18119587:+|nuORF REV__ENST00000593460.1_1_19:18119032-18119587:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 540.757069 1079.49959 0.42375 0.00022914 -0.63688 -0.0003444 -0.21313 -0.00011525 540.7565515121156 28.662 0.72958 26.666 26.134 26.864 -1.9962 0.0019273 -0.000305 NaN 19.362 27 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1172900 + 52356 23360 34812 34833 -0.03698394089951762 VSTHILMHR 9 Unmodified _VSTHILMHR_ 0 0 0 REV__ENSG00000140548|ENST00000268154|ZNF710 REV__ENSG00000140548|ENST00000268154|ZNF710 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7757568359375 2 547.300393 1092.58623 NaN NaN NaN NaN NaN NaN NaN 164.62 1 159.55 159.05 160.05 -5.0648 0 0 0 0.23508 1 32112 32112 10.074 0.6908 1 + 52357 16587 34813 34834 51223 51223 0.0436431393093244 VSTINLKVS 9 Unmodified _VSTINLKVS_ 0 0 0 REV__ENST00000326639.10_2_4:129012597-129019357:+|nuORF REV__ENST00000326639.10_2_4:129012597-129019357:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2424011230469 2 480.78985 959.565146 0.0050118 2.4096E-06 -0.2576 -0.00012385 -0.25259 -0.00012144 480.7897317017236 31.235 0.48987 31.235 30.968 31.458 0 20 13 2 0 0 0 0.45788 1 5640 5640 26.268 0 1 1844100 + 52358 20583 34814 34835 51224 51224 0.0837462710304635 VSTVRGKES 9 Unmodified _VSTVRGKES_ 0 0 0 REV__LRIF1|p.T125I|1|0.07|ENSG00000121931|chr1:110952510-110952510|G/A|missense_variant REV__LRIF1|p.T125I|1|0.07|ENSG00000121931|chr1:110952510-110952510|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7660217285156 2 481.766906 961.519259 NaN NaN NaN NaN NaN NaN NaN 54.032 1 51.148 50.648 51.648 -2.8837 0 0 0 0.20155 1 10301 10301 23.148 3.8914 1 + 52359 15670 34815 34836 51225 51225 0.036959819208163935 VSTVRGKES 9 Unmodified _VSTVRGKES_ 0 0 0 REV__LRIF1|p.T125I|1|0.07|ENSG00000121931|chr1:110952510-110952510|G/A|missense_variant REV__LRIF1|p.T125I|1|0.07|ENSG00000121931|chr1:110952510-110952510|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7669677734375 2 481.766906 961.519259 NaN NaN NaN NaN NaN NaN NaN 54.518 1 51.38 50.88 51.88 -3.1377 0 0 0 0.22251 1 10091 10091 16.942 2.104 1 + 52360 15670 34815 34836 51226 51226 0.036959819208163935 VSVASLPLNHN 11 Unmodified _VSVASLPLNHN_ 0 0 0 ENST00000296701.10_1_5:147763547-147774317:+|nuORF ENST00000296701.10_1_5:147763547-147774317:+|nuORF ENST00000296701.10_1_5:147763547-147774317:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3154907226562 2 575.814387 1149.61422 -0.29919 -0.00017228 -0.43378 -0.00024978 -0.73297 -0.00042205 575.8139629663799 111.34 0.62399 106.92 106.58 107.2 -4.4231 33 17 3 0 0 0 0.43921 1 21947 21947 26.268 1.2772 1 3011600 52361 8513 34816 34837 51227 51227 0.04539915392024341 VSVGFHAG 8 Unmodified _VSVGFHAG_ 0 0 0 REV__ENST00000564460.2_1_16:950870-951110:-|nuORF REV__ENST00000564460.2_1_16:950870-951110:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.2013854980469 2 387.20067 772.386788 NaN NaN NaN NaN NaN NaN NaN 54.135 1 50.998 50.498 51.498 -3.1377 0 0 0 0.21486 1 10010 10010 9.3474 0 1 + 52362 23090 34817 34838 51228 51228 -0.008509980253393223 VSVGVISN 8 Unmodified _VSVGVISN_ 0 0 0 REV__ENSG00000157637|ENST00000374759|SLC38A10 REV__ENSG00000157637|ENST00000374759|SLC38A10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7207946777344 2 387.721436 773.428318 -0.33443 -0.00012967 0.48854 0.00018942 0.15412 5.9754E-05 387.72155848929964 70.926 0.67206 67.677 67.285 67.957 -3.2492 30 18 2 0 0 0 8448 1 13745 13745 0.12286 0 1 2917400 + 52363 17303 34818 34839 51229 51229 0.032541379433382644 VSVNERLVY 9 Unmodified _VSVNERLVY_ 0 0 0 nc|ENSG00000141391|Q96N28-2|PRELID3A;ENSG00000141391|ENST00000440960|PRELID3A nc|ENSG00000141391|Q96N28-2|PRELID3A nc|ENSG00000141391|Q96N28-2|PRELID3A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2009582519531 3 360.201229 1077.58186 0.078162 2.8154E-05 -0.16306 -5.8733E-05 -0.084894 -3.0579E-05 360.2011373067734 45.754 0.44904 45.754 45.554 46.003 0 21 12 2 0 0 0 0.77797 2 8594 8594;8653 2.7352 0 1 1227800 52364 4358 34819 34840 51230;51231 51230 0.046171279889904326 VSVNKIAGVVA 11 Unmodified _VSVNKIAGVVA_ 0 0 0 REV__nc|ENSG00000130958|Q76EJ3-2|SLC35D2 REV__nc|ENSG00000130958|Q76EJ3-2|SLC35D2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 528.812255859375 2 528.824224 1055.63389 NaN NaN NaN NaN NaN NaN NaN 164.96 1 160.17 159.67 160.67 -4.7898 0 0 0 0.1773 1 33003 33003 3.3108 0 1 + 52365 16044 34820 34841 51232 51232 0.10830291402771763 VSVQDKDAL 9 Unmodified _VSVQDKDAL_ 0 0 0 REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2667541503906 2 487.761289 973.508025 0.032678 1.5939E-05 0.1651 8.053E-05 0.19778 9.6469E-05 487.76218728943354 43.13 4.7646 40.411 40.092 44.856 -2.7191 375 135 6 0 0 0 0.41266 1 8169 8169 24.991 2.3329 1 4606900000 + 52366 13013 34821 34842 51233 51233 0.02021159826665553 VSVQDKDAL 9 Unmodified _VSVQDKDAL_ 0 0 0 REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant REV__ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25775146484375 2 487.761289 973.508025 0.094453 4.6071E-05 0.11524 5.6209E-05 0.20969 0.00010228 487.7623264963329 43.172 4.6741 40.414 40.021 44.695 -2.7581 407 133 6 0 0 0 0.30618 1 7847 7847 31.268 2.7738 1 4172199999.9999995 + 52367 13013 34821 34842 51234 51234 0.02021159826665553 VSVSNGIDAI 10 Unmodified _VSVSNGIDAI_ 0 0 0 REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1 REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2654724121094 2 487.761289 973.508025 0.094453 4.6071E-05 0.11524 5.6209E-05 0.20969 0.00010228 487.7623264963329 43.172 4.6741 40.414 40.021 44.695 -2.7581 407 133 6 0 0 0 0.33865 1 7862 7862 34.932 7.3033 1 4172199999.9999995 + 52368 25228 34822 34843 51235 51235 0.02021159826665553 VSVSNGIDAI 10 Unmodified _VSVSNGIDAI_ 0 0 0 REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1 REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26715087890625 2 487.761289 973.508025 -0.2824 -0.00013775 0.42481 0.0002072 0.1424 6.946E-05 487.76235588978847 43.109 4.8749 40.503 40.142 45.017 -2.606 439 139 6 0 0 0 0.43443 1 7762 7762 28.495 0.86571 1 3396799999.9999995 + 52369 25228 34822 34843 51236 51236 0.02021159826665553 VSWSRLDG 8 Unmodified _VSWSRLDG_ 0 0 0 IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant;ENSG00000174498|ENST00000327987|IGDCC3;IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant;IGDCC3|p.P522Lfs*71|1|0.48|ENSG00000174498|chr15:65330738-65330738|G/-|frameshift_variant IGDCC3|p.P723Rfs*37|2|0.31|ENSG00000174498|chr15:65329427-65329427|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23529052734375 2 460.235242 918.45593 0.53053 0.00024417 -0.39333 -0.00018102 0.13721 6.3147E-05 460.2351061317001 45.421 0.52593 45.421 45.165 45.691 0 30 14 3 0 0 0 0.71876 1 8573 8573 11.64 0 1 1302900 52370 6352;11936 34823 34844 51237 51237 -0.006559587964261482 VSYDEYRY 8 Unmodified _VSYDEYRY_ 0 0 0 nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant;nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-2|CFTR nc|ENSG00000001626|P13569-2|CFTR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7791748046875 2 547.743096 1093.47164 0.26849 0.00014706 -0.018968 -1.039E-05 0.24952 0.00013667 547.7429832011245 89.444 2.276 85.666 84.578 86.854 -3.7779 157 64 3 0 0 0 8448 1 17343 17343 6.2058 0 1 11518000 52371 958 34824 34845 51238 51238 -0.07135717070036662 VSYEVRSTF 9 Unmodified _VSYEVRSTF_ 0 0 0 TAS2R38|p.R8H|1|0.62|ENSG00000257138|chr7:141973667-141973667|C/T|missense_variant;TAS2R38|p.S164*|1|0.27|ENSG00000257138|chr7:141973200-141973201|-/A|frameshift_variant;ENSG00000257138|ENST00000547270|TAS2R38 TAS2R38|p.R8H|1|0.62|ENSG00000257138|chr7:141973667-141973667|C/T|missense_variant TAS2R38|p.R8H|1|0.62|ENSG00000257138|chr7:141973667-141973667|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7764282226562 2 544.274564 1086.53457 0.062908 3.4239E-05 0.38553 0.00020984 0.44844 0.00024407 544.2748004284956 95.934 0.7506 92.053 91.686 92.436 -3.881 29 21 2 0 0 0 0.56623 1 18392 18392 34.402 2.0962 1 1242800 52372 7941 34825 34846 51239 51239 -0.005231512820046191 VSYGYAWN 8 Unmodified _VSYGYAWN_ 0 0 0 REV__nc|ENSG00000108423|Q9UJT1-6|TUBD1 REV__nc|ENSG00000108423|Q9UJT1-6|TUBD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.2664794921875 3 320.480104 958.418482 -0.84129 -0.00026962 0.82205 0.00026345 -0.019245 -6.1676E-06 320.4803280267687 25.335 0.96299 23.481 22.846 23.809 -1.8534 41 27 2 0 0 0 0.88047 1 4051 4051 0.45834 0 1 624500 + 52373 15122 34826 34847 51240 51240 -0.062390500620495004 VSYLIQEAR 9 Unmodified _VSYLIQEAR_ 0 0 0 REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4 REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2013244628906 3 360.201229 1077.58186 0.020572 7.41E-06 0.17546 6.3199E-05 0.19603 7.0609E-05 360.20121577845765 48.645 0.49354 45.646 45.368 45.861 -2.999 21 13 2 0 0 0 0.72996 1 8854 8854 4.897 0.70751 1 1928400 + 52374 19894 34827 34848 51241 51241 0.046171279889904326 VSYMYIVS 8 Unmodified _VSYMYIVS_ 0 0 0 ENSG00000170605|ENST00000641329|OR9K2;nc|ENSG00000170605|Q8NGE7|OR9K2 ENSG00000170605|ENST00000641329|OR9K2 ENSG00000170605|ENST00000641329|OR9K2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23846435546875 2 481.238604 960.462655 NaN NaN NaN NaN NaN NaN NaN 93.36 1 89.516 89.016 90.016 -3.844 0 0 0 0.2343 1 17899 17899 1.3295 1.2655 1 52375 6084 34828 34849 51242 51242 -0.019157819600764014 VSYSSMSSDD 10 Unmodified _VSYSSMSSDD_ 0 0 0 REV__TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant REV__TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2012023925781 3 359.806216 1076.39682 0.024002 8.6359E-06 0.28217 0.00010153 0.30617 0.00011016 359.8062711908588 48.911 1.3247 45.912 45.402 46.727 -2.999 104 37 4 0 0 0 0.89825 1 8895 8895 8.4443 2.2385 1 17473000 + 52376 15162 34829 34850 51243 51243 -0.1383226766356529 VSYTWDSV 8 Unmodified _VSYTWDSV_ 0 0 0 REV__nc|ENSG00000131686|P23280-3|CA6 REV__nc|ENSG00000131686|P23280-3|CA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72210693359375 2 478.721633 955.428712 0.26124 0.00012506 1.1737 0.00056187 1.4349 0.00068693 478.7221066101205 100.27 1.156 95.974 95.278 96.434 -4.297 62 33 2 0 0 0 0.66265 1 19213 19213 18.135 0 1 4408700 + 52377 24039 34830 34851 51244 51244 -0.05078487127468634 VSYTWDSV 8 Unmodified _VSYTWDSV_ 0 0 0 REV__nc|ENSG00000131686|P23280-3|CA6 REV__nc|ENSG00000131686|P23280-3|CA6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7219543457031 2 478.721633 955.428712 0.25542 0.00012228 1.1505 0.00055078 1.4059 0.00067305 478.7220278604925 99.806 1.4084 95.817 95.107 96.516 -3.9895 76 40 2 0 0 0 0.66265 1 19246 19246 18.135 0 1 4247500 + 52378 24039 34830 34851 51245 51245 -0.05078487127468634 VSYVVIAVY 9 Unmodified _VSYVVIAVY_ 0 0 0 REV__ENSG00000174358|ENST00000304460|SLC6A19 REV__ENSG00000174358|ENST00000304460|SLC6A19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.4864807128906 3 338.195304 1011.56408 NaN NaN NaN NaN NaN NaN NaN 125.86 1 125.86 125.36 126.36 0 0 0 0 0.19632 1 24832 24832 0.073264 0 1 + 52379 18409 34831 34852 51246 51246 0.05876412734130554 VTAAVAPVLS 10 Unmodified _VTAAVAPVLS_ 0 0 0 CDC23|p.L234Sfs*23|1|0.44|ENSG00000094880|chr5:138198737-138198738|-/A|frameshift_variant;ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-2|CDC23 CDC23|p.L234Sfs*23|1|0.44|ENSG00000094880|chr5:138198737-138198738|-/A|frameshift_variant CDC23|p.L234Sfs*23|1|0.44|ENSG00000094880|chr5:138198737-138198738|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25177001953125 2 464.279118 926.543683 -0.1203 -5.5852E-05 -0.1004 -4.6615E-05 -0.2207 -0.00010247 464.2790586953987 90.738 2.0849 86.878 85.938 88.023 -3.8595 228 59 5 0 0 0 0.20847 1 17864 17864 43.858 7.3521 1 229170000 52380 452 34832 34853 51247 51247 0.07747242074333371 VTAAVAPVLS 10 Unmodified _VTAAVAPVLS_ 0 0 0 CDC23|p.L234Sfs*23|1|0.44|ENSG00000094880|chr5:138198737-138198738|-/A|frameshift_variant;ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-2|CDC23 CDC23|p.L234Sfs*23|1|0.44|ENSG00000094880|chr5:138198737-138198738|-/A|frameshift_variant CDC23|p.L234Sfs*23|1|0.44|ENSG00000094880|chr5:138198737-138198738|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2592468261719 2 464.279118 926.543683 0.14959 6.945E-05 -0.32106 -0.00014906 -0.17148 -7.9613E-05 464.2789629344679 90.787 2.2271 87.009 86.012 88.239 -3.7779 236 63 5 0 0 0 0.20847 1 17475 17475 43.858 11.073 1 225400000 52381 452 34832 34853 51248 51248 0.07747242074333371 VTAEIAESV 9 Unmodified _VTAEIAESV_ 0 0 0 ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB ENST00000558725.5_1_15:67519241-67546969:-|nuORF ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2307434082031 2 459.742565 917.470577 -0.08768 -4.031E-05 0.12707 5.8418E-05 0.039387 1.8108E-05 459.7423026813294 82.182 0.34503 78.625 78.481 78.826 -3.557 14 9 2 0 0 0 0.28819 1 16053 16053 32.305 1.6689 1 1121500 52382 2201 34833 34854 51249 51249 0.008540685610455512 VTAGGNYKLG 10 Unmodified _VTAGGNYKLG_ 0 0 0 tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1 tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1 tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2664489746094 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 47.411 1 44.542 44.042 45.042 -2.869 0 0 0 2.8426 1 8957 8957 8.893 7.1508 1 52383 26165 34834 34855 51250 51250 0.02332883409144415 VTAKPTDQP 9 Unmodified _VTAKPTDQP_ 0 0 0 REV__SHROOM2|p.Q1179Rfs*3|1|0.46|ENSG00000146950|chrX:9932813-9932813|C/-|frameshift_variant REV__SHROOM2|p.Q1179Rfs*3|1|0.46|ENSG00000146950|chrX:9932813-9932813|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7222900390625 2 478.756007 955.497461 NaN NaN NaN NaN NaN NaN NaN 81.818 1 77.979 77.479 78.479 -3.8392 0 0 0 0.23508 1 15536 15536 10.824 0.75 1 + 52384 16912 34835 34856 51251 51251 0.01793177172248761 VTAKRIAKKH 10 Unmodified _VTAKRIAKKH_ 0 0 0 REV__SF3B1|p.R1075K|1|0.37|ENSG00000115524|chr2:197398027-197398027|C/T|missense_variant REV__SF3B1|p.R1075K|1|0.37|ENSG00000115524|chr2:197398027-197398027|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3348388671875 2 576.372207 1150.72986 0.29576 0.00017047 -3.9824 -0.0022953 -3.6866 -0.0021249 576.8718394236861 135.42 0.17723 135.42 135.26 135.43 0 5 4 2 0 0 0 0.91149 1 26795 26795 3.5965 1.5367 1 1372900 + 52385 24608 34836 34857 51252 51252 0.16052484033525616 VTALFDRFL 9 Unmodified _VTALFDRFL_ 0 0 0 REV__GRK7|p.R67H|1|0.11|ENSG00000114124|chr3:141778484-141778484|G/A|missense_variant REV__GRK7|p.R67H|1|0.11|ENSG00000114124|chr3:141778484-141778484|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2703857421875 2 541.305667 1080.59678 NaN NaN NaN NaN NaN NaN NaN 159.95 1 154.69 154.19 155.19 -5.2526 0 0 0 0.23508 1 31037 31037 11.64 0 1 + 52386 15364 34837 34858 51253 51253 0.059706198569983826 VTALPFPDP 9 Unmodified _VTALPFPDP_ 0 0 0 ENST00000604760.1_1_15:67834762-67834924:-|nuORF ENST00000604760.1_1_15:67834762-67834924:-|nuORF ENST00000604760.1_1_15:67834762-67834924:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7398681640625 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 106.84 1 106.84 106.34 107.34 0 0 0 0 0.23508 1 21005 21005 11.64 0 1 52387 11730 34838 34859 51254 51254 0.02195266665944473 VTAMCHKYL 9 Unmodified _VTAMCHKYL_ 0 0 0 REV__CARD10|p.R380C|1|0.19|ENSG00000100065|chr22:37507882-37507882|G/A|missense_variant REV__CARD10|p.R380C|1|0.19|ENSG00000100065|chr22:37507882-37507882|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2755737304688 2 533.26463 1064.51471 NaN NaN NaN NaN NaN NaN NaN 53.47 1 50.586 50.086 51.086 -2.8837 0 0 0 0.17505 1 10185 10185 4.7159 0 1 + 52388 13258 34839 34860 51255 51255 -0.014969418179589411 VTANKLLHL 9 Unmodified _VTANKLLHL_ 0 0 0 ENST00000578002.1_1_17:72950488-72952031:-|nuORF;nc|ENSG00000167861|Q8IV36-3|HID1;HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1 ENST00000578002.1_1_17:72950488-72952031:-|nuORF ENST00000578002.1_1_17:72950488-72952031:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 337.1754455566406 3 336.878198 1007.61277 -0.25921 -8.7321E-05 0.16916 5.6985E-05 -0.090051 -3.0336E-05 336.8782707164765 75.108 0.53071 75.108 74.745 75.276 0 20 14 2 0 0 0 0.87888 1 14537 14537 1.0715 0 1 1041900 52389 5855 34840 34861 51256 51256 0.10926326093908756 VTAPGEAA 8 Unmodified _VTAPGEAA_ 0 0 0 REV__RABL6|p.K613Sfs*9|1|0.17|ENSG00000196642|chr9:136839766-136839766|C/-|frameshift_variant REV__RABL6|p.K613Sfs*9|1|0.17|ENSG00000196642|chr9:136839766-136839766|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 358.2319030761719 2 358.184686 714.354819 NaN NaN NaN NaN NaN NaN NaN 71.415 1 67.948 67.448 68.448 -3.467 0 0 0 0.21486 1 13536 13536 2.5775 0 1 + 52390 19267 34841 34862 51257 51257 -0.01378410499137317 VTAPLISKIFR 11 Unmodified _VTAPLISKIFR_ 0 0 0 tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1 tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1 tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7691040039062 2 622.889898 1243.76524 NaN NaN NaN NaN NaN NaN NaN 141.2 1 136.21 135.71 136.71 -4.9877 0 0 0 0.23429 1 27186 27186 4.897 1.9018 1 52391 25893 34842 34863 51258 51258 0.15311101770635105 VTAQKPTAV 9 Unmodified _VTAQKPTAV_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2336120605469 2 457.768917 913.523281 0.31035 0.00014207 0.23188 0.00010615 0.54223 0.00024822 457.7690813460417 24.549 0.23917 24.549 24.475 24.715 0 10 6 2 0 0 0 0.81359 1 4248 4248 11.495 9.6505 1 331220 52392 5864 34843 34864 51259 51259 0.06306071414530834 VTAQVAAQVA 10 Unmodified _VTAQVAAQVA_ 0 0 0 REV__sp|F5HF35|UL136_HCMVMProteinUL136OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL136PE=1SV=1 REV__sp|F5HF35|UL136_HCMVMProteinUL136OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL136PE=1SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7236328125 2 479.271824 956.529095 -0.36549 -0.00017517 0.53364 0.00025576 0.16815 8.0589E-05 479.2719056454557 37.39 0.51226 34.921 34.639 35.151 -2.4688 29 14 3 0 0 0 0.85084 1 6901 6901 14.405 0 1 1488300 + 52393 24692 34844 34865 51260 51260 0.049091699261907706 VTAREHCH 8 Unmodified _VTAREHCH_ 0 0 0 ENST00000526038.1_1_9:100136781-100138195:+|nuORF ENST00000526038.1_1_9:100136781-100138195:+|nuORF ENST00000526038.1_1_9:100136781-100138195:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.03973388671875 3 318.152104 951.434483 -0.78797 -0.00025069 -0.18342 -5.8355E-05 -0.97139 -0.00030905 318.1519986779334 60.537 0.5235 60.537 60.314 60.838 0 24 14 2 0 0 0 1.0281 1 11652 11652 0.45834 0 1 2131300 52394 10907 34845 34866 51261 51261 -0.04317667096790956 VTASFTASV 9 Unmodified _VTASFTASV_ 0 0 0 nc|ENSG00000118432|P21554-2|CNR1;nc|ENSG00000118432|P21554-3|CNR1;ENSG00000118432|ENST00000369501|CNR1 nc|ENSG00000118432|P21554-2|CNR1 nc|ENSG00000118432|P21554-2|CNR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 441.2223815917969 2 441.732 881.449448 0.38609 0.00017055 0.05751 2.5404E-05 0.4436 0.00019595 441.73186973116583 107.03 0.55571 107.03 106.72 107.27 0 20 15 2 0 0 0 0.35292 1 21058 21058 2.4985 1.0434 1 1376700 52395 3034 34846 34867 51262 51262 0.0039810325220059894 VTASFTASV 9 Unmodified _VTASFTASV_ 0 0 0 nc|ENSG00000118432|P21554-2|CNR1;nc|ENSG00000118432|P21554-3|CNR1;ENSG00000118432|ENST00000369501|CNR1 nc|ENSG00000118432|P21554-2|CNR1 nc|ENSG00000118432|P21554-2|CNR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 441.732 881.449448 -0.39689 -0.00017532 0.73333 0.00032394 0.33644 0.00014862 441.7322432171658 111.7 0.66252 107.27 106.82 107.48 -4.4231 0.071491 0.00048162 NaN 2.4985 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1444800 52396 3034 34846 34867 0.0039810325220059894 VTASFTASV 9 Unmodified _VTASFTASV_ 0 0 0 nc|ENSG00000118432|P21554-2|CNR1;nc|ENSG00000118432|P21554-3|CNR1;ENSG00000118432|ENST00000369501|CNR1 nc|ENSG00000118432|P21554-2|CNR1 nc|ENSG00000118432|P21554-2|CNR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 441.732 881.449448 -0.10838 -4.7876E-05 0.19042 8.4116E-05 0.08204 3.624E-05 441.73213564603014 111.75 0.62726 107.26 106.96 107.59 -4.4915 0.058695 1.9826E-06 NaN 2.4985 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1698000 52397 3034 34846 34867 0.0039810325220059894 VTASFTASV 9 Unmodified _VTASFTASV_ 0 0 0 nc|ENSG00000118432|P21554-2|CNR1;nc|ENSG00000118432|P21554-3|CNR1;ENSG00000118432|ENST00000369501|CNR1 nc|ENSG00000118432|P21554-2|CNR1 nc|ENSG00000118432|P21554-2|CNR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 441.732 881.449448 0.4676 0.00020655 -0.23445 -0.00010357 0.23314 0.00010299 441.73190561879466 111.47 0.55544 107.24 106.97 107.53 -4.2289 0.042 -0.00037338 NaN 2.4985 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 807240 52398 3034 34846 34867 0.0039810325220059894 VTASPWGR 8 Unmodified _VTASPWGR_ 0 0 0 REV__ENST00000562503.5_3_16:57806199-57831993:-|nuORF REV__ENST00000562503.5_3_16:57806199-57831993:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2313537597656 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 146.79 1 142.11 141.61 142.61 -4.6868 0 0 0 0.22692 1 29117 29117 0.68139 0 1 + 52399 23065 34847 34868 51263 51263 0.009123624117705731 VTASVPAA 8 Unmodified _VTASVPAA_ 0 0 0 REV__nc|ENSG00000151726|P33121-2|ACSL1 REV__nc|ENSG00000151726|P33121-2|ACSL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 358.5167236328125 2 358.202879 714.391205 NaN NaN NaN NaN NaN NaN NaN 66.616 1 63.119 62.619 63.619 -3.4965 0 0 0 0.23664 1 12488 12488 3.2813 0 1 + 52400 17080 34848 34869 51264 51264 0.02258466397574921 VTASYKIVV 9 Unmodified _VTASYKIVV_ 0 0 0 ENST00000456969.2_1_X:75555899-75556166:-|nuORF ENST00000456969.2_1_X:75555899-75556166:-|nuORF ENST00000456969.2_1_X:75555899-75556166:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2655029296875 2 490.294768 978.574983 NaN NaN NaN NaN NaN NaN NaN 144.54 1 144.54 144.04 145.04 0 0 0 0 0.1963 1 28878 28878 0.0033805 0 1 52401 10032 34849 34870 51265 51265 0.084838151084341 VTAYLKAANQ 10 Unmodified _VTAYLKAANQ_ 0 0 0 REV__nc|ENSG00000033178|A0AVT1-2|UBA6 REV__nc|ENSG00000033178|A0AVT1-2|UBA6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018737792969 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 72.346 1 69.035 68.535 69.535 -3.3107 0 0 0 0.22588 1 14098 14098 5.7834 0.48655 1 + 52402 14022 34850 34871 51266 51266 0.046171279889904326 VTCFGHPL 8 Unmodified _VTCFGHPL_ 0 0 0 REV__ENSG00000145391|ENST00000274031|SETD7 REV__ENSG00000145391|ENST00000274031|SETD7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21636962890625 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 72.053 1 68.514 68.014 69.014 -3.5385 0 0 0 0.21486 1 13665 13665 10.183 1.5901 1 + 52403 16837 34851 34872 51267 51267 -0.019854982088986617 VTCRHVSP 8 Carbamidomethyl (C) _VTC(Carbamidomethyl (C))RHVSP_ VTC(1)RHVSP VTC(52)RHVSP 0 1 0 nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.74383544921875 2 478.242544 954.470534 0.13633 6.5201E-05 0.087394 4.1796E-05 0.22373 0.000107 478.24262055047205 152.8 0.909 147.53 147.08 147.98 -5.2669 58 25 3 0 0 0 0.15482 1 29618 29618 52.268 12.311 1 8456800 52404 5093 34852 34873 51268 51268 7 -0.008522099199353761 VTCRHVSP 8 Carbamidomethyl (C) _VTC(Carbamidomethyl (C))RHVSP_ 0 1 0 nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 478.242544 954.470534 0.12762 6.1034E-05 -0.49609 -0.00023725 -0.36847 -0.00017622 478.24220017000096 152.12 0.74765 147.37 147.06 147.81 -4.7523 -0.14618 -7.6661E-05 NaN 52.268 44 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4582200 52405 5093 34852 34873 7 -0.008522099199353761 VTCRQHAAA 9 Unmodified _VTCRQHAAA_ 0 0 0 REV__ENSG00000215910|ENST00000688073|C1orf167 REV__ENSG00000215910|ENST00000688073|C1orf167 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7397766113281 2 478.740168 955.465783 NaN NaN NaN NaN NaN NaN NaN 8.2783 1 7.5992 7.0992 8.0992 -0.67913 0 0 0 0.23508 1 843 843 0 0 1 + 52406 19696 34853 34874 51269 51269 -0.01373094062716973 VTCSKAIKI 9 Unmodified _VTCSKAIKI_ 0 0 0 nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78814697265625 2 481.788795 961.563038 NaN NaN NaN NaN NaN NaN NaN 179.34 1 174.43 173.93 174.93 -4.9114 0 0 0 0.23508 1 35784 35784 0 0 1 52407 12553 34854 34875 51270 51270 0.08071875093560266 VTCSRRKML 9 Unmodified _VTCSRRKML_ 0 0 0 REV__ENST00000590156.5_1_18:43668092-43668176:-|nuORF REV__ENST00000590156.5_1_18:43668092-43668176:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7703247070312 2 547.302078 1092.5896 0.45227 0.00024753 2.5165 0.0013773 2.9687 0.0016248 547.80322361528 118.66 0.1035 114.16 114.11 114.22 -4.502 4 2 2 0 0 0 0.71527 1 23402 23402 25.399 8.457 1 586260 + 52408 21642 34855 34876 51271 51271 0.04701240713256993 VTCYSCCTY 9 Unmodified _VTCYSCCTY_ 0 0 0 MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|6|2|sense MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|6|2|sense MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|6|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2792358398438 2 521.687564 1041.36057 0.20339 0.00010611 -3.0494 -0.0015908 -2.846 -0.0014847 521.6866279861378 124.97 0.14388 124.97 124.86 125.01 0 5 3 2 0 0 0 0.73309 1 24628 24628 4.756 1.8668 1 978010 52409 12134 34856 34877 51272 51272 -0.15845139365637806 VTDCGYTIS 9 Unmodified _VTDCGYTIS_ 0 0 0 nc|ENSG00000116774|Q9NRN5-2|OLFML3;ENSG00000116774|ENST00000320334|OLFML3 nc|ENSG00000116774|Q9NRN5-2|OLFML3 nc|ENSG00000116774|Q9NRN5-2|OLFML3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.17041015625 3 320.144392 957.411348 -0.23998 -7.6827E-05 0.72574 0.00023234 0.48577 0.00015552 320.1446003174639 97.81 1.0762 93.712 93.151 94.228 -4.0978 49 30 2 0 0 0 0.72108 1 19250 19250 5.2969 0 1 3462900 52410 2953 34857 34878 51273 51273 -0.06906150724773852 VTDCGYTIS 9 Unmodified _VTDCGYTIS_ 0 0 0 nc|ENSG00000116774|Q9NRN5-2|OLFML3;ENSG00000116774|ENST00000320334|OLFML3 nc|ENSG00000116774|Q9NRN5-2|OLFML3 nc|ENSG00000116774|Q9NRN5-2|OLFML3 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 320.144392 957.411348 -0.65359 -0.00020924 1.2811 0.00041015 0.62755 0.00020091 320.1447602956625 97.592 1.1104 93.672 93.159 94.27 -3.9194 -0.017131 0.00042434 NaN 5.2969 72 31 3 NaN NaN NaN NaN 0 NaN NaN 0 4886600 52411 2953 34857 34878 -0.06906150724773852 VTDDSPKYNY 10 Unmodified _VTDDSPKYNY_ 0 0 0 nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1 nc|ENSG00000090861|P49588-2|AARS1 nc|ENSG00000090861|P49588-2|AARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2750854492188 2 601.272218 1200.52988 0.51005 0.00030668 -0.34355 -0.00020657 0.1665 0.00010011 601.2720675942516 39.025 1.1503 39.025 38.638 39.789 0 121 32 6 0 0 0 0.00021243 4 7230 7186;7230;7272;7294 121.53 92.453 1 247090000 52412 1793 34858 34879 51274;51275;51276;51277 51275 -0.0623608021542168 VTDDSPKYNY 10 Unmodified _VTDDSPKYNY_ 0 0 0 nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1 nc|ENSG00000090861|P49588-2|AARS1 nc|ENSG00000090861|P49588-2|AARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.275390625 2 601.272218 1200.52988 0.8346 0.00050182 -0.65102 -0.00039144 0.18358 0.00011038 601.2718887414329 42.048 0.90927 39.329 38.967 39.877 -2.7191 113 25 6 0 0 0 1.3872E-06 3 7834 7834;7879;7924 142.08 103.9 1 297240000 52413 1793 34858 34879 51278;51279;51280 51278 -0.0623608021542168 VTDDSPKYNY 10 Unmodified _VTDDSPKYNY_ 0 0 0 nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1 nc|ENSG00000090861|P49588-2|AARS1 nc|ENSG00000090861|P49588-2|AARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.275146484375 2 601.272218 1200.52988 0.2923 0.00017575 -0.11422 -6.8679E-05 0.17808 0.00010707 601.2721866912796 41.933 1.296 39.282 38.865 40.161 -2.651 120 36 6 0 0 0 4.7187E-07 3 7582 7486;7532;7582 145.13 113.86 1 235540000 52414 1793 34858 34879 51281;51282;51283 51283 -0.0623608021542168 VTDDSPKYNY 10 Unmodified _VTDDSPKYNY_ 0 0 0 nc|ENSG00000090861|P49588-2|AARS1;ENSG00000090861|ENST00000261772|AARS1 nc|ENSG00000090861|P49588-2|AARS1 nc|ENSG00000090861|P49588-2|AARS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2750854492188 2 601.272218 1200.52988 0.10383 6.2433E-05 0.12362 7.4331E-05 0.22746 0.00013676 601.2723489220077 41.868 1.538 39.262 38.875 40.413 -2.606 139 43 7 0 0 0 7.1121E-05 3 7567 7472;7518;7567 133.05 104.56 1 216110000 52415 1793 34858 34879 51284;51285;51286 51286 -0.0623608021542168 VTDEDLSAI 9 Unmodified _VTDEDLSAI_ 0 0 0 tr|U7T2H7|U7T2H7_FUSNUDNAintegrityscanningproteinDisAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=disAPE=3SV=1 tr|U7T2H7|U7T2H7_FUSNUDNAintegrityscanningproteinDisAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=disAPE=3SV=1 tr|U7T2H7|U7T2H7_FUSNUDNAintegrityscanningproteinDisAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=disAPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2333068847656 2 481.73748 961.460406 0.07631 3.6762E-05 -0.29278 -0.00014104 -0.21647 -0.00010428 481.73739488983296 127.71 0.95479 123.01 122.64 123.6 -4.6998 44 26 2 0 0 0 0.36689 1 24624 24624 34.102 0 1 2205500 52416 26364 34859 34880 51287 51287 -0.021865391641881615 VTDEEDEADE 10 Unmodified _VTDEEDEADE_ 0 0 0 ENSG00000180329|ENST00000315286|CCDC43 ENSG00000180329|ENST00000315286|CCDC43 ENSG00000180329|ENST00000315286|CCDC43 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.333984375 2 576.214763 1150.41497 NaN NaN NaN NaN NaN NaN NaN 76.513 1 76.513 76.013 77.013 0 0 0 0 0.22588 1 14870 14870 10.824 0 1 52417 6667 34860 34881 51288 51288 -0.15421854207897923 VTDEPIVF 8 Unmodified _VTDEPIVF_ 0 0 0 REV__tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1 REV__tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24395751953125 2 460.242201 918.469849 NaN NaN NaN NaN NaN NaN NaN 92.276 1 88.351 87.851 88.851 -3.9251 0 0 0 0.21323 1 18069 18069 14.582 0 1 + 52418 24876 34861 34882 51289 51289 0.007352739120165097 VTDESPPAP 9 Unmodified _VTDESPPAP_ 0 0 0 REV__ENST00000561536.5_1_16:89789538-89789974:+|nuORF REV__ENST00000561536.5_1_16:89789538-89789974:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22369384765625 2 456.71909 911.423627 -0.10878 -4.9682E-05 0.40827 0.00018646 0.29949 0.00013678 456.7191711577375 82.768 2.2728 79.16 78.05 80.323 -3.6079 159 64 4 0 0 0 0.54354 1 16163 16163 16.942 0 1 11181000 + 52419 23055 34862 34883 51290 51290 -0.035627909900881605 VTDFMLCV 8 Unmodified _VTDFMLCV_ 0 0 0 ENST00000593859.5_1_19:51322452-51323394:-|nuORF;nc|ENSG00000167748|P06870-2|KLK1;ENSG00000167748|ENST00000301420|KLK1 ENST00000593859.5_1_19:51322452-51323394:-|nuORF ENST00000593859.5_1_19:51322452-51323394:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2465515136719 2 464.219357 926.424161 0.010398 4.8272E-06 0.55262 0.00025654 0.56301 0.00026136 464.21960541580785 53.013 0.4896 49.926 49.654 50.144 -3.0876 27 13 3 0 0 0 0.73426 1 9736 9736 9.3474 0 1 1424500 52420 5843 34863 34884 51291 51291 -0.041994108662379404 VTDGAILGKLY 11 Unmodified _VTDGAILGKLY_ 0 0 0 nc|ENSG00000055609|Q8NEZ4-3|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;ENSG00000055609|ENST00000262189|KMT2C;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant nc|ENSG00000055609|Q8NEZ4-3|KMT2C nc|ENSG00000055609|Q8NEZ4-3|KMT2C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3319702148438 2 575.329339 1148.64412 -0.011149 -6.4141E-06 0.19413 0.00011169 0.18298 0.00010527 575.3293895748541 135.15 0.70868 130.51 130.09 130.8 -4.6399 47 19 3 0 0 0 0.097547 2 26644 26644;26689 79.596 47.559 1 12444000 52421 1273 34864 34885 51292;51293 51292 0.0757485433734928 VTDGAILGKLY 11 Unmodified _VTDGAILGKLY_ 0 0 0 nc|ENSG00000055609|Q8NEZ4-3|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;ENSG00000055609|ENST00000262189|KMT2C;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant nc|ENSG00000055609|Q8NEZ4-3|KMT2C nc|ENSG00000055609|Q8NEZ4-3|KMT2C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3314819335938 2 575.329339 1148.64412 0.14167 8.1504E-05 0.077962 4.4854E-05 0.21963 0.00012636 575.3292364303471 135.42 0.7753 130.52 130.08 130.85 -4.8951 51 21 3 0 0 0 0.35553 2 26034 25989;26034 53.404 33.042 1 12421000 52422 1273 34864 34885 51294;51295 51295 0.0757485433734928 VTDGAILGKLY 11 Unmodified _VTDGAILGKLY_ 0 0 0 nc|ENSG00000055609|Q8NEZ4-3|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;ENSG00000055609|ENST00000262189|KMT2C;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant nc|ENSG00000055609|Q8NEZ4-3|KMT2C nc|ENSG00000055609|Q8NEZ4-3|KMT2C MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 575.329339 1148.64412 0.22847 0.00013144 -0.16749 -9.6362E-05 0.060976 3.5081E-05 575.329176515402 135.38 0.77917 130.55 130.2 130.98 -4.8307 -0.04241 -0.0001745 NaN 79.596 50 21 3 NaN NaN NaN NaN 0 NaN NaN 0 9568600 52423 1273 34864 34885 0.0757485433734928 VTDHTYEDC 9 Unmodified _VTDHTYEDC_ 0 0 0 ENSG00000087253|ENST00000262134|LPCAT2;nc|ENSG00000087253|Q7L5N7-2|LPCAT2 ENSG00000087253|ENST00000262134|LPCAT2 ENSG00000087253|ENST00000262134|LPCAT2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2692260742188 2 541.708396 1081.40224 0.19896 0.00010778 3.45 0.0018689 3.649 0.0019767 541.710130779369 88.84 0.45625 88.84 88.578 89.034 0 14 12 2 0 0 0 0.51974 1 17346 17346 0.029283 0 1 1235300 52424 1710 34865 34886 51296 51296 -0.13520544081097796 VTDIIMQKM 9 Unmodified _VTDIIMQKM_ 0 0 0 KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;KIF21A|p.L1270Sfs*13|1|0.12|ENSG00000139116|chr12:39318174-39318175|-/G|frameshift_variant KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant KIF21A|p.P1541Lfs*6|1|0.27|ENSG00000139116|chr12:39303074-39303074|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2022705078125 3 360.192689 1077.55624 -0.22702 -8.1773E-05 0.87251 0.00031427 0.64549 0.0002325 360.1929382813883 64.249 0.72876 61.251 60.91 61.639 -2.9975 45 20 3 0 0 0 0.87497 1 12496 12496 4.897 4.897 1 3324600 52425 4222 34866 34887 51297 51297 0.020561941507139636 VTDKIHKA 8 Unmodified _VTDKIHKA_ 0 0 0 GNPTAB|p.F1228Lfs*5|2|0.13|ENSG00000111670|chr12:101749110-101749110|A/-|frameshift_variant;ENSG00000111670|ENST00000299314|GNPTAB;ENST00000549194.1_1_12:102150985-102153918:-|nuORF GNPTAB|p.F1228Lfs*5|2|0.13|ENSG00000111670|chr12:101749110-101749110|A/-|frameshift_variant GNPTAB|p.F1228Lfs*5|2|0.13|ENSG00000111670|chr12:101749110-101749110|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 456.2703857421875 2 456.269084 910.523616 NaN NaN NaN NaN NaN NaN NaN 5.8285 1 4.7885 4.2885 5.2885 -1.04 0 0 0 0.21486 1 335 335 0.69038 0 1 + 52426 2633 34867 34888 51298 51298 0.06477491134376123 VTDKSMVDKY 10 Oxidation (M) _VTDKSM(Oxidation (M))VDKY_ VTDKSM(1)VDKY VTDKSM(57)VDKY 0 0 1 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2953491210938 2 601.292096 1200.56964 0.34182 0.00020553 0.6398 0.00038471 0.98162 0.00059024 601.2926358661373 18.771 0.44919 18.771 18.582 19.031 0 31 12 4 0 0 0 0.10926 1 3026 3026 57.249 37.992 1 3985700 52427 4038 34868 34889 51299 51299 66 -0.02262276536362151 VTDKSMVDKY 10 Oxidation (M) _VTDKSM(Oxidation (M))VDKY_ VTDKSM(1)VDKY VTDKSM(42)VDKY 0 0 1 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2947387695312 2 601.292096 1200.56964 1.2591 0.00075712 -0.90745 -0.00054564 0.3517 0.00021148 601.2915529011814 20.321 0.42295 18.924 18.723 19.146 -1.3966 26 11 3 0 0 0 0.23598 1 3377 3377 41.956 27.117 1 2988500 52428 4038 34868 34889 51300 51300 66 -0.02262276536362151 VTDKSMVDKY 10 Oxidation (M) _VTDKSM(Oxidation (M))VDKY_ VTDKSM(1)VDKY VTDKSM(42)VDKY 0 0 1 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.295166015625 2 601.292096 1200.56964 0.090434 5.4377E-05 0.63293 0.00038058 0.72337 0.00043496 601.2927377373314 20.145 0.70197 18.82 18.629 19.331 -1.3251 37 19 4 0 0 0 0.23082 1 3111 3111 42.312 23.055 1 3848000 52429 4038 34868 34889 51301 51301 66 -0.02262276536362151 VTDLPEDVK 9 Unmodified _VTDLPEDVK_ 0 0 0 ENSG00000106483|ENST00000436072|SFRP4 ENSG00000106483|ENST00000436072|SFRP4 ENSG00000106483|ENST00000436072|SFRP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 508.2790222167969 2 508.268947 1014.52334 -0.098343 -4.9985E-05 0.31052 0.00015783 0.21217 0.00010784 508.2690931177235 132.9 0.87976 128.26 127.88 128.76 -4.6399 40 24 2 0 0 0 0.35556 1 26266 26266 12.241 0 1 2665800 52430 2387 34869 34890 51302 51302 0.016660266238545773 VTDLPEDVK 9 Unmodified _VTDLPEDVK_ 0 0 0 ENSG00000106483|ENST00000436072|SFRP4 ENSG00000106483|ENST00000436072|SFRP4 ENSG00000106483|ENST00000436072|SFRP4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 508.268947 1014.52334 -0.3297 -0.00016757 0.38508 0.00019572 0.055385 2.8151E-05 508.2691459746584 133.16 0.74394 128.3 127.92 128.66 -4.8576 0.00043419 0.00013954 NaN 12.241 25 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1774700 52431 2387 34869 34890 0.016660266238545773 VTDLPEDVK 9 Unmodified _VTDLPEDVK_ 0 0 0 ENSG00000106483|ENST00000436072|SFRP4 ENSG00000106483|ENST00000436072|SFRP4 ENSG00000106483|ENST00000436072|SFRP4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 508.268947 1014.52334 0.12598 6.4031E-05 0.06045 3.0725E-05 0.18643 9.4756E-05 508.26897579776846 133.14 0.74706 128.34 127.97 128.72 -4.799 0.04408 -0.00019046 NaN 12.241 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2046000 52432 2387 34869 34890 0.016660266238545773 VTDLTHPAT 9 Unmodified _VTDLTHPAT_ 0 0 0 REV__ENST00000407627.6_1_19:8027511-8027907:-|nuORF REV__ENST00000407627.6_1_19:8027511-8027907:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7232360839844 2 477.748182 953.481811 0.1499 7.1616E-05 -0.29532 -0.00014109 -0.14542 -6.9472E-05 477.74794747714384 63.322 0.71125 59.906 59.541 60.252 -3.4158 43 19 3 0 0 0 0.54354 1 11860 11860 16.942 2.3606 1 7820200 + 52433 21395 34870 34891 51303 51303 0.0032089065517766358 VTDNLKII 8 Unmodified _VTDNLKII_ 0 0 0 REV__CSNK2A2|p.I99N|1|0.22|ENSG00000070770|chr16:58186777-58186777|A/T|missense_variant REV__CSNK2A2|p.I99N|1|0.22|ENSG00000070770|chr16:58186777-58186777|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2388610839844 2 458.279118 914.543683 NaN NaN NaN NaN NaN NaN NaN 74.463 1 74.463 73.963 74.963 0 0 0 0 0.20618 1 14456 14456 20.454 2.3186 1 + 52434 13596 34871 34892 51304 51304 0.08299242074338053 VTDNRAFGY 9 Unmodified _VTDNRAFGY_ 0 0 0 DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant;nc|ENSG00000153071|P98082-2|DAB2;nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2 DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2809448242188 2 521.751256 1041.48796 0.15522 8.0988E-05 -0.20959 -0.00010935 -0.054368 -2.8366E-05 521.751030625015 54.291 0.80445 54.291 53.962 54.766 0 52 22 3 0 0 0 0.051332 1 10376 10376 70.332 36.23 1 6876200 52435 776 34872 34893 51305 51305 -0.031125911132676265 VTDNRAFGY 9 Unmodified _VTDNRAFGY_ 0 0 0 DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant;nc|ENSG00000153071|P98082-2|DAB2;nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2 DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.27880859375 2 521.751256 1041.48796 -0.3476 -0.00018136 0.44769 0.00023358 0.10009 5.2221E-05 521.7513970124272 57.365 0.77869 54.471 54.132 54.911 -2.8944 55 21 3 0 0 0 0.0071415 3 11029 10953;11029;11073 110.67 59.82 1 9495600 52436 776 34872 34893 51306;51307;51308 51307 -0.031125911132676265 VTDNRAFGY 9 Unmodified _VTDNRAFGY_ 0 0 0 DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant;nc|ENSG00000153071|P98082-2|DAB2;nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2 DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2730712890625 2 521.751256 1041.48796 -0.64519 -0.00033663 0.78827 0.00041128 0.14308 7.4651E-05 521.7515844653268 57.611 0.7823 54.359 54.044 54.826 -3.2517 51 21 3 0 0 0 0.35556 1 10751 10751 19.626 18.411 1 6818800 52437 776 34872 34893 51309 51309 -0.031125911132676265 VTDNRAFGY 9 Unmodified _VTDNRAFGY_ 0 0 0 DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant;nc|ENSG00000153071|P98082-2|DAB2;nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2 DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant DAB2|p.F398Lfs*15|1|0.36|ENSG00000153071|chr5:39382765-39382765|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.268310546875 2 521.751256 1041.48796 0.11165 5.8252E-05 -0.12569 -6.558E-05 -0.014045 -7.3278E-06 521.7511368905773 57.614 0.84355 54.409 54.008 54.851 -3.2052 57 23 3 0 0 0 0.012534 2 10735 10694;10735 99.755 57.661 1 7685400 52438 776 34872 34893 51310;51311 51311 -0.031125911132676265 VTDNRYKSKY 10 Unmodified _VTDNRYKSKY_ 0 0 0 DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant;DIDO1|p.R726C|1|0.09|ENSG00000101191|chr20:62896271-62896271|G/A|missense_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24237060546875 3 425.222693 1272.64625 -0.62904 -0.00026748 0.68778 0.00029246 0.058744 2.4979E-05 425.22296950605784 15.978 0.32043 14.762 14.619 14.939 -1.2159 29 8 5 0 0 0 0.91149 1 2514 2514 6.6235 0.75532 1 11649000 52439 837 34873 34894 51312 51312 0.020832830751487563 VTDPSTLEQY 10 Unmodified _VTDPSTLEQY_ 0 0 0 IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant;IGF2R|p.V768E|1|0.21|ENSG00000197081|chr6:160047865-160047865|T/A|missense_variant;IGF2R|p.D779N|1|0.38|ENSG00000197081|chr6:160047897-160047897|G/A|missense_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3159790039062 2 576.774593 1151.53463 0.56177 0.00032402 -0.35366 -0.00020398 0.20811 0.00012003 576.7743404469502 76.752 1.2219 76.752 76.31 77.532 0 89 34 4 0 0 0 5.032700000000001E-19 1 14930 14930 168.54 86.647 1 57773000 52440 7326 34874 34895 51313 51313 -0.03507196072655461 VTDPSTLEQY 10 Unmodified _VTDPSTLEQY_ 0 0 0 IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant;IGF2R|p.V768E|1|0.21|ENSG00000197081|chr6:160047865-160047865|T/A|missense_variant;IGF2R|p.D779N|1|0.38|ENSG00000197081|chr6:160047897-160047897|G/A|missense_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3197021484375 2 576.774593 1151.53463 0.053649 3.0944E-05 0.19464 0.00011227 0.24829 0.00014321 576.7746617205594 80.615 1.1232 77.058 76.531 77.655 -3.557 103 31 5 0 0 0 1.2228E-37 1 15709 15709 201.57 101.77 1 55067000 52441 7326 34874 34895 51314 51314 -0.03507196072655461 VTDPSTLEQY 10 Unmodified _VTDPSTLEQY_ 0 0 0 IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant;IGF2R|p.V768E|1|0.21|ENSG00000197081|chr6:160047865-160047865|T/A|missense_variant;IGF2R|p.D779N|1|0.38|ENSG00000197081|chr6:160047897-160047897|G/A|missense_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.319091796875 2 576.774593 1151.53463 0.11862 6.8418E-05 0.056544 3.2613E-05 0.17517 0.00010103 576.7746002828345 80.982 1.0852 77.142 76.664 77.749 -3.8392 98 30 5 0 0 0 1.2228E-37 1 15381 15381 173.69 84.732 1 45541000 52442 7326 34874 34895 51315 51315 -0.03507196072655461 VTDPSTLEQY 10 Unmodified _VTDPSTLEQY_ 0 0 0 IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant;IGF2R|p.V768E|1|0.21|ENSG00000197081|chr6:160047865-160047865|T/A|missense_variant;IGF2R|p.D779N|1|0.38|ENSG00000197081|chr6:160047897-160047897|G/A|missense_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3197021484375 2 576.774593 1151.53463 -0.19337 -0.00011153 0.40046 0.00023097 0.20709 0.00011944 576.7748134794817 80.755 1.1795 77.067 76.652 77.831 -3.6879 99 33 4 0 0 0 0.17837 1 15473 15473 75.761 39.634 1 63173000 52443 7326 34874 34895 51316 51316 -0.03507196072655461 VTDQLSRRL 9 Unmodified _VTDQLSRRL_ 0 0 0 nc|ENSG00000107831|P55075-2|FGF8;nc|ENSG00000107831|P55075-3|FGF8;nc|ENSG00000107831|P55075|FGF8;ENSG00000107831|ENST00000320185|FGF8 nc|ENSG00000107831|P55075-2|FGF8 nc|ENSG00000107831|P55075-2|FGF8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7877807617188 2 544.314554 1086.61456 0.24845 0.00013523 -1.3815 -0.00075198 -1.1331 -0.00061675 544.3133856128559 129.04 0.41249 124.41 124.29 124.7 -4.6292 15 11 2 0 0 0 0.76271 1 25447 25447 10.074 1.3285 1 1406800 52444 2442 34875 34896 51317 51317 0.07471335111858934 VTDQLSRRL 9 Unmodified _VTDQLSRRL_ 0 0 0 nc|ENSG00000107831|P55075-2|FGF8;nc|ENSG00000107831|P55075-3|FGF8;nc|ENSG00000107831|P55075|FGF8;ENSG00000107831|ENST00000320185|FGF8 nc|ENSG00000107831|P55075-2|FGF8 nc|ENSG00000107831|P55075-2|FGF8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.781982421875 2 544.314554 1086.61456 0.11255 6.1262E-05 -1.1551 -0.00062871 -1.0425 -0.00056745 544.3139580135495 129.21 0.44322 124.39 124.16 124.61 -4.817 19 12 2 0 0 0 0.47479 1 24772 24772 8.7454 0 1 1411400 52445 2442 34875 34896 51318 51318 0.07471335111858934 VTDQNKIVTY 10 Unmodified _VTDQNKIVTY_ 0 0 0 ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF;POLD3|p.I262*|1|0.25|ENSG00000077514|chr11:74625453-74625453|A/-|frameshift_variant;POLD3|p.R300Gfs*8|2|0.38|ENSG00000077514|chr11:74625564-74625565|AA/-|frameshift_variant;ENSG00000077514|ENST00000263681|POLD3 ENST00000532497.5_1_11:74303703-74322559:+|nuORF ENST00000532497.5_1_11:74303703-74322559:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2621459960938 2 590.814053 1179.61355 0.37163 0.00021956 -0.042974 -2.5389E-05 0.32865 0.00019417 590.8140026160531 57.321 0.70728 54.426 54.098 54.806 -2.8944 57 19 4 0 0 0 0.97709 1 11016 11016 56.939 35.189 1 12364000 52446 1560 34876 34897 51319 51319 0.030930759523016604 VTDQNKIVTY 10 Unmodified _VTDQNKIVTY_ 0 0 0 ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF;POLD3|p.I262*|1|0.25|ENSG00000077514|chr11:74625453-74625453|A/-|frameshift_variant;POLD3|p.R300Gfs*8|2|0.38|ENSG00000077514|chr11:74625564-74625565|AA/-|frameshift_variant;ENSG00000077514|ENST00000263681|POLD3 ENST00000532497.5_1_11:74303703-74322559:+|nuORF ENST00000532497.5_1_11:74303703-74322559:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2753295898438 2 590.814053 1179.61355 0.48615 0.00028722 -0.15876 -9.38E-05 0.32739 0.00019342 590.8139311547118 57.644 0.64582 54.392 54.078 54.724 -3.2517 53 17 4 0 0 0 0.14455 1 10670 10670 85.764 46.551 1 10315000 52447 1560 34876 34897 51320 51320 0.030930759523016604 VTDQNKIVTY 10 Unmodified _VTDQNKIVTY_ 0 0 0 ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF;POLD3|p.I262*|1|0.25|ENSG00000077514|chr11:74625453-74625453|A/-|frameshift_variant;POLD3|p.R300Gfs*8|2|0.38|ENSG00000077514|chr11:74625564-74625565|AA/-|frameshift_variant;ENSG00000077514|ENST00000263681|POLD3 ENST00000532497.5_1_11:74303703-74322559:+|nuORF ENST00000532497.5_1_11:74303703-74322559:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 590.814053 1179.61355 0.29415 0.00017379 0.1155 6.8237E-05 0.40965 0.00024202 590.8140688962285 54.404 0.66074 54.404 54.033 54.694 0 -0.024729 7.8093E-05 NaN 85.764 54 18 4 NaN NaN NaN NaN 0 NaN NaN 0 10716000 52448 1560 34876 34897 0.030930759523016604 VTDQNKIVTY 10 Unmodified _VTDQNKIVTY_ 0 0 0 ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF;POLD3|p.I262*|1|0.25|ENSG00000077514|chr11:74625453-74625453|A/-|frameshift_variant;POLD3|p.R300Gfs*8|2|0.38|ENSG00000077514|chr11:74625564-74625565|AA/-|frameshift_variant;ENSG00000077514|ENST00000263681|POLD3 ENST00000532497.5_1_11:74303703-74322559:+|nuORF ENST00000532497.5_1_11:74303703-74322559:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 590.814053 1179.61355 0.076421 4.5151E-05 0.29702 0.00017548 0.37344 0.00022063 590.8142028282309 57.698 0.70508 54.493 54.111 54.816 -3.2052 0.063992 0.00029258 NaN 85.764 58 19 4 NaN NaN NaN NaN 0 NaN NaN 0 8059100 52449 1560 34876 34897 0.030930759523016604 VTDRDEAT 8 Unmodified _VTDRDEAT_ 0 0 0 REV__FNDC7|p.G65R|1|0.27|ENSG00000143107|chr1:108717887-108717887|G/A|missense_variant REV__FNDC7|p.G65R|1|0.27|ENSG00000143107|chr1:108717887-108717887|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7508850097656 2 453.711796 905.40904 NaN NaN NaN NaN NaN NaN NaN 61.13 1 57.761 57.261 58.261 -3.3694 0 0 0 0.21486 1 11394 11394 7.2892 0 1 + 52450 23543 34877 34898 51321 51321 -0.047448631382394524 VTDRDIDRY 9 Unmodified _VTDRDIDRY_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.330322265625 2 576.785827 1151.5571 -0.35844 -0.00020674 0.16885 9.7392E-05 -0.18958 -0.00010935 576.7855278060043 36.019 0.67313 33.625 33.164 33.837 -2.3938 40 18 4 0 0 0 0.20546 1 6640 6640 37.075 14.338 1 4180900 52451 3928 34878 34899 51322 51322 -0.012615518843858808 VTDRDIDRY 9 Unmodified _VTDRDIDRY_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.785827 1151.5571 0.29978 0.00017291 -0.048756 -2.8122E-05 0.25102 0.00014479 576.7858021446449 33.417 0.49051 33.417 33.2 33.69 0 -0.16775 -0.00025055 NaN 37.075 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4199700 52452 3928 34878 34899 -0.012615518843858808 VTDRDIDRY 9 Unmodified _VTDRDIDRY_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.785827 1151.5571 0.30748 0.00017735 0.49536 0.00028571 0.80284 0.00046307 576.7858302300632 35.884 0.59637 33.608 33.316 33.913 -2.2766 0.022533 0.00037713 NaN 37.075 35 16 4 NaN NaN NaN NaN 0 NaN NaN 0 3238900 52453 3928 34878 34899 -0.012615518843858808 VTDRFYLAP 9 Unmodified _VTDRFYLAP_ 0 0 0 REV__ENSG00000183671|ENST00000621141|CMKLR2 REV__ENSG00000183671|ENST00000621141|CMKLR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2740478515625 2 541.287474 1080.5604 0.40432 0.00021885 -0.35218 -0.00019063 0.052143 2.8224E-05 541.7890069281915 109.33 0.65909 109.33 108.95 109.61 0 28 18 2 0 0 0 0.46541 1 21503 21503 21.747 6.9084 1 1425500 + 52454 18849 34879 34900 51323 51323 0.023337429602861448 VTDRQDVQY 9 Unmodified _VTDRQDVQY_ 0 0 0 REV__HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|17|1|anti-sense REV__HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|17|1|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2143859863281 3 375.184127 1122.53055 -0.24507 -9.1948E-05 0.37649 0.00014125 0.13141 4.9305E-05 375.18414314755177 16.476 0.27776 16.476 16.335 16.613 0 10 7 2 0 0 0 0.87487 1 2577 2577 8.9762 4.4474 1 880640 + 52455 23626 34880 34901 51324 51324 -0.025812407757030087 VTDRQDVQY 9 Unmodified _VTDRQDVQY_ 0 0 0 REV__HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|17|1|anti-sense REV__HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|17|1|anti-sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 375.184127 1122.53055 -0.43002 -0.00016134 0.0201 7.5414E-06 -0.40992 -0.00015379 375.18412088352534 17.592 0.2347 16.281 16.169 16.404 -1.3109 -0.074793 -0.00022815 NaN 3.3196 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 560430 + 52456 23626 34880 34901 -0.025812407757030087 VTDRQDVQY 9 Unmodified _VTDRQDVQY_ 0 0 0 REV__HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|17|1|anti-sense REV__HERVH-int_dup3525|chrX:4542186-4542680:-|2.3360434519655686|0.0028617900308425|9.67|450.0|17|1|anti-sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.184127 1122.53055 -0.42974 -0.00016123 0.30184 0.00011325 -0.1279 -4.7987E-05 375.18420549579315 17.584 0.1359 16.312 16.249 16.385 -1.2722 -0.044721 8.8959E-05 NaN 3.3196 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 382660 + 52457 23626 34880 34901 -0.025812407757030087 VTDSTQVNV 9 Unmodified _VTDSTQVNV_ 0 0 0 ENST00000420642.1_7:74765936-74789271:+|nuORF;nc|ENSG00000274523|Q96I51-2|RCC1L;nc|ENSG00000274523|Q96I51-3|RCC1L;ENSG00000274523|ENST00000610322|RCC1L ENST00000420642.1_7:74765936-74789271:+|nuORF ENST00000420642.1_7:74765936-74789271:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7788391113281 2 481.743096 961.47164 NaN NaN NaN NaN NaN NaN NaN 46.046 1 43.205 42.705 43.705 -2.8409 0 0 0 0.09626 1 8686 8686 36.81 25.911 1 52458 8019 34881 34902 51325 51325 -0.010637170700306342 VTDVDYFSF 9 Unmodified _VTDVDYFSF_ 0 0 0 CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant;CSF2RB|p.A662Lfs*36|1|0.46|ENSG00000100368|chr22:36937788-36937788|G/-|frameshift_variant;ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7927856445312 2 546.747847 1091.48114 0.41731 0.00022816 -0.05196 -2.8409E-05 0.36535 0.00019975 546.7477618894505 121.39 1.156 116.86 116.28 117.44 -4.5305 94 31 4 0 0 0 0.68435 1 23269 23269 7.2892 0 1 23621000 52459 728 34882 34903 51326 51326 -0.06093948784518943 VTDVPDDI 8 Unmodified _VTDVPDDI_ 0 0 0 ENST00000468504.5_1_9:116152961-116155869:-|nuORF;ENSG00000148218|ENST00000409155|ALAD ENST00000468504.5_1_9:116152961-116155869:-|nuORF ENST00000468504.5_1_9:116152961-116155869:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21490478515625 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 159.9 1 154.67 154.17 155.17 -5.2299 0 0 0 0.21486 1 31039 31039 5.7604 0 1 52460 4734 34883 34904 51327 51327 -0.028581933643749835 VTDWKARA 8 Unmodified _VTDWKARA_ 0 0 0 REV__nc|ENSG00000259207|P05106-2|ITGB3 REV__nc|ENSG00000259207|P05106-2|ITGB3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 316.1752014160156 3 316.175015 945.503215 NaN NaN NaN NaN NaN NaN NaN 82.126 1 78.252 77.752 78.752 -3.8736 0 0 0 0.21486 1 15600 15600 3.5965 0 1 + 52461 24298 34884 34905 51328 51328 0.02828320474566226 VTEAMGAEL 9 Unmodified _VTEAMGAEL_ 0 0 0 REV__ENST00000482005.5_1_17:61936677-61937556:+|nuORF REV__ENST00000482005.5_1_17:61936677-61937556:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2453918457031 2 460.723318 919.432083 -0.087688 -4.04E-05 0.32544 0.00014994 0.23775 0.00010954 460.72329329164324 82.5 0.66245 78.892 78.568 79.231 -3.6079 27 18 2 0 0 0 0.47479 1 16087 16087 18.146 2.2992 1 1096700 + 52462 22184 34885 34906 51329 51329 -0.030855603451186653 VTEARLSFY 9 Unmodified _VTEARLSFY_ 0 0 0 nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77099609375 2 543.284931 1084.55531 0.65096 0.00035366 -3.9816 -0.0021631 -3.3306 -0.0018095 543.2852172980474 104.41 0.47917 104.41 104.17 104.65 0 22 13 3 0 0 0 0.24263 3 20518 20495;20518;20549 34.932 10.911 1 1154400 52463 4399 34886 34907 51330;51331;51332 51331 0.016414390976706272 VTEAVLAGGY 10 Unmodified _VTEAVLAGGY_ 0 0 0 ENST00000512411.5_1_4:8368690-8375449:-|nuORF ENST00000512411.5_1_4:8368690-8375449:-|nuORF ENST00000512411.5_1_4:8368690-8375449:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.264892578125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 81.292 1 77.604 77.104 78.104 -3.6879 0 0 0 0.22535 1 15491 15491 20.454 1.1966 1 52464 10756 34887 34908 51333 51333 0.012100613150096251 VTEDCCQLRDC 11 Unmodified _VTEDCCQLRDC_ 0 0 0 REV__FZD6|p.Y128C|1|0.05|ENSG00000164930|chr8:103324489-103324489|A/G|missense_variant REV__FZD6|p.Y128C|1|0.05|ENSG00000164930|chr8:103324489-103324489|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 642.89306640625 2 642.754498 1283.49444 NaN NaN NaN NaN NaN NaN NaN 169.77 1 164.84 164.34 165.34 -4.9295 0 0 0 0.23324 1 33536 33536 5.7319 0 1 + 52465 23556 34888 34909 51334 51334 -0.13596525330740405 VTEDKLEKY 9 Unmodified _VTEDKLEKY_ 0 0 0 ENSG00000197299|ENST00000355112|BLM;ENST00000560821.1_1_15:91352032-91358506:+|nuORF;ENST00000558825.5_1_15:91337395-91358506:+|nuORF ENSG00000197299|ENST00000355112|BLM ENSG00000197299|ENST00000355112|BLM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.22100830078125 3 375.532645 1123.5761 -0.24812 -9.3178E-05 0.03915 1.4702E-05 -0.20897 -7.8476E-05 375.532623138093 33.566 0.41612 31.248 31.009 31.426 -2.3175 28 11 4 0 0 0 0.56124 1 6119 6119 19.626 4.6688 1 2048900 52466 7351 34889 34910 51335 51335 0.019259846866816588 VTEDKLEKY 9 Unmodified _VTEDKLEKY_ 0 0 0 ENSG00000197299|ENST00000355112|BLM;ENST00000560821.1_1_15:91352032-91358506:+|nuORF;ENST00000558825.5_1_15:91337395-91358506:+|nuORF ENSG00000197299|ENST00000355112|BLM ENSG00000197299|ENST00000355112|BLM MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.220458984375 3 375.532645 1123.5761 -0.2808 -0.00010545 -0.15463 -5.807E-05 -0.43543 -0.00016352 375.53256013527374 33.439 0.41422 31.223 31.044 31.458 -2.2158 28 11 3 0 0 0 0.74911 1 5817 5817 14.957 0 1 1768300 52467 7351 34889 34910 51336 51336 0.019259846866816588 VTEDKLEKY 9 Unmodified _VTEDKLEKY_ 0 0 0 ENSG00000197299|ENST00000355112|BLM;ENST00000560821.1_1_15:91352032-91358506:+|nuORF;ENST00000558825.5_1_15:91337395-91358506:+|nuORF ENSG00000197299|ENST00000355112|BLM ENSG00000197299|ENST00000355112|BLM MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 375.532645 1123.5761 -0.1384 -5.1972E-05 0.013063 4.9054E-06 -0.12533 -4.7067E-05 375.5326668577578 31.156 0.38494 31.156 30.968 31.353 0 -0.071775 0.0002182 NaN 19.626 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1886100 52468 7351 34889 34910 0.019259846866816588 VTEDYLLHP 9 Unmodified _VTEDYLLHP_ 0 0 0 CLSTN1|p.P489L|1|0.26|ENSG00000171603|chr1:9741147-9741147|G/A|missense_variant CLSTN1|p.P489L|1|0.26|ENSG00000171603|chr1:9741147-9741147|G/A|missense_variant CLSTN1|p.P489L|1|0.26|ENSG00000171603|chr1:9741147-9741147|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.783447265625 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 115.21 1 115.21 114.71 115.71 0 0 0 0 0.23508 1 22671 22671 8.5933 0 1 52469 587 34890 34911 51337 51337 -2.2671392343909247E-05 VTEDYLLHP 9 Unmodified _VTEDYLLHP_ 0 0 0 CLSTN1|p.P489L|1|0.26|ENSG00000171603|chr1:9741147-9741147|G/A|missense_variant CLSTN1|p.P489L|1|0.26|ENSG00000171603|chr1:9741147-9741147|G/A|missense_variant CLSTN1|p.P489L|1|0.26|ENSG00000171603|chr1:9741147-9741147|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7869262695312 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 126.95 1 122.34 121.84 122.84 -4.6172 0 0 0 0.23508 1 25033 25033 11.64 0 1 52470 587 34890 34911 51338 51338 -2.2671392343909247E-05 VTEEIFLEY 9 Unmodified _VTEEIFLEY_ 0 0 0 ENST00000463886.1_1_22:41998573-42000148:-|nuORF;ENSG00000100418|ENST00000263256|DESI1 ENST00000463886.1_1_22:41998573-42000148:-|nuORF ENST00000463886.1_1_22:41998573-42000148:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 572.2367553710938 2 571.78443 1141.55431 0.50392 0.00028814 -1.4993 -0.00085726 -0.99536 -0.00056913 571.7827019357102 165.73 0.2025 160.78 160.66 160.87 -4.9484 10 5 3 0 0 0 0.52086 1 32391 32391 8.9129 6.2699 1 10039000 52471 1975 34891 34912 51339 51339 -0.010808200619067065 VTEEIKNP 8 Unmodified _VTEEIKNP_ 0 0 0 SLC7A6|p.Q492Sfs*8|1|0.23|ENSG00000103064|chr16:68297252-68297252|C/-|frameshift_variant;ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6 SLC7A6|p.Q492Sfs*8|1|0.23|ENSG00000103064|chr16:68297252-68297252|C/-|frameshift_variant SLC7A6|p.Q492Sfs*8|1|0.23|ENSG00000103064|chr16:68297252-68297252|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25042724609375 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 111.92 1 107.49 106.99 107.99 -4.4231 0 0 0 0.19492 1 22054 22054 26.341 0 1 52472 2162 34892 34913 51340 51340 0.01945774797957256 VTEEIKNP 8 Unmodified _VTEEIKNP_ 0 0 0 SLC7A6|p.Q492Sfs*8|1|0.23|ENSG00000103064|chr16:68297252-68297252|C/-|frameshift_variant;ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6 SLC7A6|p.Q492Sfs*8|1|0.23|ENSG00000103064|chr16:68297252-68297252|C/-|frameshift_variant SLC7A6|p.Q492Sfs*8|1|0.23|ENSG00000103064|chr16:68297252-68297252|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2593688964844 2 465.250557 928.486562 NaN NaN NaN NaN NaN NaN NaN 111.99 1 107.56 107.06 108.06 -4.4231 0 0 0 0.17894 1 22068 22068 32.117 5.7757 1 52473 2162 34892 34913 51341 51341 0.01945774797957256 VTEEMINPY 9 Unmodified _VTEEMINPY_ 0 0 0 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7819213867188 2 548.254982 1094.49541 0.29212 0.00016016 -0.76939 -0.00042182 -0.47727 -0.00026167 548.254438282831 100.21 0.64231 95.916 95.547 96.189 -4.297 30 18 2 0 0 0 0.13419 1 19157 19157 50.855 35.008 1 1788200 52474 2179 34893 34914 51342 51342 -0.04805619627904889 VTEEMINPY 9 Unmodified _VTEEMINPY_ 0 0 0 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.79296875 2 548.254982 1094.49541 0.33409 0.00018317 -0.9866 -0.00054091 -0.65251 -0.00035774 548.2541432472381 99.806 0.55151 95.817 95.59 96.142 -3.9895 24 15 2 0 0 0 0.54076 1 19157 19157 34.102 20.196 1 2039600 52475 2179 34893 34914 51343 51343 -0.04805619627904889 VTEGAVGATI 10 Unmodified _VTEGAVGATI_ 0 0 0 TMEM263|p.K47E|1|0.09|ENSG00000151135|chr12:106971179-106971179|A/G|missense_variant TMEM263|p.K47E|1|0.09|ENSG00000151135|chr12:106971179-106971179|A/G|missense_variant TMEM263|p.K47E|1|0.09|ENSG00000151135|chr12:106971179-106971179|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2273254394531 2 459.250557 916.486562 0.37502 0.00017223 0.7193 0.00033034 1.0943 0.00050257 459.25096062619525 98.232 0.8399 98.232 97.949 98.789 0 50 23 3 0 0 0 0.59928 1 19258 19258 19.257 2.3147 1 2338300 52476 25861 34894 34915 51344 51344 0.024977747979505693 VTEGIMLCL 9 Unmodified _VTEGIMLCL_ 0 0 0 REV__ENSG00000155850|ENST00000286298|SLC26A2 REV__ENSG00000155850|ENST00000286298|SLC26A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25457763671875 2 489.753564 977.492575 0.15685 7.682E-05 -0.65151 -0.00031908 -0.49465 -0.00024226 489.75314827108474 52.475 0.66264 49.387 49.099 49.761 -3.0876 26 18 2 0 0 0 0.46541 1 9674 9674 21.747 6.9084 1 1484700 + 52477 17228 34895 34916 51345 51345 0.002928337136040682 VTEGIMLCL 9 Unmodified _VTEGIMLCL_ 0 0 0 REV__ENSG00000155850|ENST00000286298|SLC26A2 REV__ENSG00000155850|ENST00000286298|SLC26A2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.753564 977.492575 -0.068398 -3.3498E-05 -0.53308 -0.00026108 -0.60148 -0.00029458 489.7532313230714 52.219 0.78807 49.337 49.004 49.793 -2.8824 -0.085454 -8.9251E-05 NaN 21.747 28 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1250100 + 52478 17228 34895 34916 0.002928337136040682 VTEGKEPGV 9 Unmodified _VTEGKEPGV_ 0 0 0 ENST00000434813.3_1_2:201724904-201726163:-|nuORF ENST00000434813.3_1_2:201724904-201726163:-|nuORF ENST00000434813.3_1_2:201724904-201726163:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2343444824219 2 458.242732 914.470912 0.011611 5.3209E-06 1.3672 0.00062653 1.3789 0.00063185 458.24324344545846 105.9 0.6331 101.53 101.22 101.86 -4.3764 28 17 2 0 0 0 0.35443 1 20334 20334 28.487 5.3384 1 2298900 52479 9821 34896 34917 51346 51346 0.010254882809135779 VTEGMDDFCY 10 Unmodified _VTEGMDDFCY_ 0 0 0 FAM47B|p.R59C|1|0.37|ENSG00000189132|chrX:34943006-34943006|C/T|missense_variant FAM47B|p.R59C|1|0.37|ENSG00000189132|chrX:34943006-34943006|C/T|missense_variant FAM47B|p.R59C|1|0.37|ENSG00000189132|chrX:34943006-34943006|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2555541992188 2 590.220282 1178.42601 NaN NaN NaN NaN NaN NaN NaN 141.85 1 137.2 136.7 137.7 -4.6493 0 0 0 0.22588 1 28028 28028 3.9444 1.2092 1 52480 11797 34897 34918 51347 51347 -0.15606446638958005 VTEGVIVPE 9 Unmodified _VTEGVIVPE_ 0 0 0 ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant;ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant;nc|ENSG00000147180|Q9Y462|ZNF711;nc|ENSG00000147180|Q9Y462-2|ZNF711;ENSG00000147180|ENST00000674551|ZNF711 ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 471.8520812988281 2 471.760758 941.506963 NaN NaN NaN NaN NaN NaN NaN 148.95 1 143.89 143.39 144.39 -5.0595 0 0 0 0.16428 1 28860 28860 28.487 0 1 52481 4691 34898 34919 51348 51348 0.033869454577597935 VTEIDEPL 8 Unmodified _VTEIDEPL_ 0 0 0 REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2380676269531 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 125.68 1 125.68 125.18 126.18 0 0 0 0 0.17894 1 24789 24789 32.117 0 1 + 52482 16691 34899 34920 51349 51349 -0.0009733381323258072 VTEIDEPL 8 Unmodified _VTEIDEPL_ 0 0 0 REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.238525390625 2 458.237116 914.459678 NaN NaN NaN NaN NaN NaN NaN 103.87 1 99.65 99.15 100.15 -4.2183 0 0 0 0.21323 1 20423 20423 14.582 0 1 + 52483 16691 34899 34920 51350 51350 -0.0009733381323258072 VTEIDKGSAY 10 Unmodified _VTEIDKGSAY_ 0 0 0 ENSG00000026652|ENST00000320285|AGPAT4;nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 ENSG00000026652|ENST00000320285|AGPAT4 ENSG00000026652|ENST00000320285|AGPAT4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2783813476562 2 541.771854 1081.52915 -0.062153 -3.3673E-05 0.10226 5.54E-05 0.040104 2.1727E-05 541.7721457275944 39.519 0.45381 36.97 36.719 37.172 -2.5491 14 12 2 0 0 0 0.8126 1 7327 7327 14.405 3.5815 1 420900 52484 1144 34900 34921 51351 51351 -0.008348748644721127 VTEIMSMGY 9 Oxidation (M) _VTEIM(Oxidation (M))SMGY_ VTEIM(1)SMGY VTEIM(37)SM(-37)GY 0 0 1 ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B ENSG00000119318|ENST00000358015|RAD23B ENSG00000119318|ENST00000358015|RAD23B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.2715454101562 2 523.730286 1045.44602 -0.21184 -0.00011095 -0.18494 -9.6861E-05 -0.39678 -0.00020781 523.7302954523516 91.771 0.72308 87.846 87.509 88.232 -3.9251 53 20 3 0 0 0 0.074448 1 17935 17935 74.216 55.602 2 11331000 52485 3068 34901 34922 51352 51352 42;43 -0.0748865090831714 VTEIMSMGY 9 Oxidation (M) _VTEIMSM(Oxidation (M))GY_ VTEIM(0.037)SM(0.963)GY VTEIM(-14)SM(14)GY 0 0 1 ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B ENSG00000119318|ENST00000358015|RAD23B ENSG00000119318|ENST00000358015|RAD23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6838989257812 2 523.730286 1045.44602 -0.20472 -0.00010722 0.22289 0.00011674 0.018172 9.5174E-06 523.7304928166673 87.777 0.94804 83.781 83.481 84.429 -3.9953 70 26 3 0 0 0 0.14832 1 16783 16783 44.407 26.272 2 6531600 52486 3068 34901 34922 51353 51353 42;43 -0.0748865090831714 VTEIMSMGY 9 Oxidation (M) _VTEIM(Oxidation (M))SMGY_ VTEIM(1)SMGY VTEIM(54)SM(-54)GY 0 0 1 ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B ENSG00000119318|ENST00000358015|RAD23B ENSG00000119318|ENST00000358015|RAD23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.68603515625 2 523.730286 1045.44602 -0.26249 -0.00013747 0.21432 0.00011225 -0.048167 -2.5227E-05 523.7303723716738 91.965 0.69409 87.871 87.495 88.19 -4.0946 35 19 2 0 0 0 0.0098628 2 17492 17489;17492 104.8 58.931 2 6319500 52487 3068 34901 34922 51354;51355 51355 42;43 -0.0748865090831714 VTEIMSMGY 9 Oxidation (M) _VTEIMSM(Oxidation (M))GY_ VTEIM(0.005)SM(0.995)GY VTEIM(-23)SM(23)GY 0 0 1 ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B ENSG00000119318|ENST00000358015|RAD23B ENSG00000119318|ENST00000358015|RAD23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6909790039062 2 523.730286 1045.44602 0.2066 0.0001082 -0.11554 -6.0511E-05 0.091059 4.769E-05 523.7302177851022 87.523 0.94717 83.773 83.414 84.361 -3.7501 48 26 2 0 0 0 0.011131 2 16825 16825;16827 60.47 53.983 2 6522400 52488 3068 34901 34922 51356;51357 51356 42;43 -0.0748865090831714 VTEIMSMGY 9 Oxidation (M) _VTEIM(Oxidation (M))SMGY_ VTEIM(1)SMGY VTEIM(58)SM(-58)GY 0 0 1 ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B ENSG00000119318|ENST00000358015|RAD23B ENSG00000119318|ENST00000358015|RAD23B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.68603515625 2 523.730286 1045.44602 0.17229 9.0235E-05 -0.65362 -0.00034232 -0.48133 -0.00025209 523.7301316084458 91.643 0.93588 87.835 87.408 88.344 -3.8083 61 26 4 0 0 0 0.00011526 1 17519 17519 125.62 44.012 2 8707800 52489 3068 34901 34922 51358 51358 42;43 -0.0748865090831714 VTEINYEQP 9 Unmodified _VTEINYEQP_ 0 0 0 REV__ENST00000505791.5_2_5:128796160-128862161:+|nuORF REV__ENST00000505791.5_2_5:128796160-128862161:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7665405273438 2 546.764029 1091.5135 0.06555 3.584E-05 -0.81734 -0.00044689 -0.75179 -0.00041105 546.7639547669477 51.094 0.49438 48.048 47.768 48.262 -3.0453 40 13 4 0 0 0 0.27986 1 9380 9380 32.786 3.7041 1 4865100 + 52490 16854 34902 34923 51359 51359 -0.02859161381525155 VTEINYEQP 9 Unmodified _VTEINYEQP_ 0 0 0 REV__ENST00000505791.5_2_5:128796160-128862161:+|nuORF REV__ENST00000505791.5_2_5:128796160-128862161:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.764029 1091.5135 0.044334 2.424E-05 -1.1255 -0.00061538 -1.0812 -0.00059114 546.7639988338257 50.936 0.60025 48.054 47.714 48.314 -2.8824 0.028098 5.4681E-05 NaN 32.786 49 16 4 NaN NaN NaN NaN 0 NaN NaN 0 5972000 + 52491 16854 34902 34923 -0.02859161381525155 VTEINYEQP 9 Unmodified _VTEINYEQP_ 0 0 0 REV__ENST00000505791.5_2_5:128796160-128862161:+|nuORF REV__ENST00000505791.5_2_5:128796160-128862161:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.764029 1091.5135 0.06555 3.584E-05 -0.81734 -0.00044689 -0.75179 -0.00041105 546.7639547669477 51.094 0.49438 48.048 47.768 48.262 -3.0453 0.022301 0.00039166 NaN 32.786 40 13 4 NaN NaN NaN NaN 0 NaN NaN 0 4865100 + 52492 16854 34902 34923 -0.02859161381525155 VTEINYEQP 9 Unmodified _VTEINYEQP_ 0 0 0 REV__ENST00000505791.5_2_5:128796160-128862161:+|nuORF REV__ENST00000505791.5_2_5:128796160-128862161:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.764029 1091.5135 0.014197 7.7625E-06 -1.2006 -0.00065647 -1.1865 -0.00064871 546.7640218162805 51.071 0.66582 48.019 47.677 48.343 -3.0517 -0.0070108 -2.7494E-05 NaN 32.786 53 18 4 NaN NaN NaN NaN 0 NaN NaN 0 4788900 + 52493 16854 34902 34923 -0.02859161381525155 VTEITMSYR 9 Unmodified _VTEITMSYR_ 0 0 0 REV__ENSG00000145743|ENST00000542267|FBXL17 REV__ENSG00000145743|ENST00000542267|FBXL17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 367.1861267089844 3 367.186592 1098.53795 NaN NaN NaN NaN NaN NaN NaN 66.906 1 66.906 66.406 67.406 0 0 0 0 0.19512 1 12928 12928 12.241 0 1 + 52494 16852 34903 34924 51360 51360 -0.007382244996506415 VTEKDLLLY 9 Unmodified _VTEKDLLLY_ 0 0 0 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7800903320312 2 547.310615 1092.60668 0.32621 0.00017854 -0.029914 -1.6372E-05 0.2963 0.00016217 547.3105205717752 124.3 1.3366 124.3 123.78 125.11 0 126 37 5 0 0 0 0.00017171 5 24567 24565;24567;24606;24608;24610 121.53 32.133 1 188150000 52495 5937 34904 34925 51361;51362;51363;51364;51365 51362 0.06407763071729278 VTEKDLLLY 9 Unmodified _VTEKDLLLY_ 0 0 0 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7841796875 2 547.310615 1092.60668 0.23329 0.00012768 0.037283 2.0405E-05 0.27057 0.00014809 547.3105703268549 128.8 1.2619 124.17 123.54 124.8 -4.6292 142 35 5 0 0 0 0.032727 2 25341 25308;25341 60.47 29.767 1 201810000 52496 5937 34904 34925 51366;51367 51367 0.06407763071729278 VTEKDLLLY 9 Unmodified _VTEKDLLLY_ 0 0 0 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7836303710938 2 547.310615 1092.60668 0.13233 7.2424E-05 0.1745 9.5507E-05 0.30683 0.00016793 547.3106581038443 128.93 1.4395 124.11 123.55 124.99 -4.817 136 40 5 0 0 0 0.012196 4 24690 24670;24687;24690;24836 100.09 29.187 1 183480000 52497 5937 34904 34925 51368;51369;51370;51371 51370 0.06407763071729278 VTEKDLLLY 9 Unmodified _VTEKDLLLY_ 0 0 0 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7758178710938 2 547.310615 1092.60668 0.23756 0.00013002 0.11053 6.0495E-05 0.34809 0.00019052 547.3106543181083 128.88 1.4069 124.14 123.59 125 -4.7408 149 39 5 0 0 0 0.055281 2 24888 24711;24888 42.232 11.529 1 193440000 52498 5937 34904 34925 51372;51373 51373 0.06407763071729278 VTEKEPKTY 9 Unmodified _VTEKEPKTY_ 0 0 0 ENSG00000056277|ENST00000370978|ZNF280C;ZNF280C|p.M335Rfs*9|1|0.02|ENSG00000056277|chrX:130229120-130229121|-/ATCC|frameshift_variant ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.790283203125 2 547.790047 1093.56554 0.25759 0.00014111 -0.18937 -0.00010373 0.068223 3.7372E-05 547.7900451938086 17.201 0.24596 17.201 17.064 17.31 0 12 6 3 0 0 0 0.048406 1 2712 2712 71.708 35.581 1 608390 52499 1279 34905 34926 51374 51374 0.022500020322468117 VTEKEPKTY 9 Unmodified _VTEKEPKTY_ 0 0 0 ENSG00000056277|ENST00000370978|ZNF280C;ZNF280C|p.M335Rfs*9|1|0.02|ENSG00000056277|chrX:130229120-130229121|-/ATCC|frameshift_variant ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7899169921875 2 547.790047 1093.56554 0.16414 8.9917E-05 -0.987 -0.00054067 -0.82286 -0.00045075 547.7895049096896 18.595 0.2092 17.284 17.177 17.386 -1.3109 9 5 2 0 0 0 0.031986 2 3027 3020;3027 79.427 43.3 1 679140 52500 1279 34905 34926 51375;51376 51376 0.022500020322468117 VTEKEPKTY 9 Unmodified _VTEKEPKTY_ 0 0 0 ENSG00000056277|ENST00000370978|ZNF280C;ZNF280C|p.M335Rfs*9|1|0.02|ENSG00000056277|chrX:130229120-130229121|-/ATCC|frameshift_variant ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7890625 2 547.790047 1093.56554 -0.34591 -0.00018949 0.46347 0.00025388 0.11756 6.4399E-05 547.789801104681 18.531 0.17703 17.205 17.08 17.257 -1.3251 7 4 2 0 0 0 0.11282 1 2787 2787 51.415 26.016 1 465230 52501 1279 34905 34926 51377 51377 0.022500020322468117 VTEKEPKTY 9 Unmodified _VTEKEPKTY_ 0 0 0 ENSG00000056277|ENST00000370978|ZNF280C;ZNF280C|p.M335Rfs*9|1|0.02|ENSG00000056277|chrX:130229120-130229121|-/ATCC|frameshift_variant ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7894287109375 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 18.807 1 17.172 16.672 17.672 -1.6351 0 0 0 0.10686 1 2804 2804 37.075 14.338 1 52502 1279 34905 34926 51378 51378 0.022500020322468117 VTEKGEPTCLC 11 Unmodified _VTEKGEPTCLC_ 0 0 0 ENST00000464690.5_1_3:120129559-120169830:-|nuORF;ENSG00000163430|ENST00000295633|FSTL1 ENST00000464690.5_1_3:120129559-120169830:-|nuORF ENST00000464690.5_1_3:120129559-120169830:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2719116210938 2 590.272849 1178.53115 NaN NaN NaN NaN NaN NaN NaN 91.984 1 88.176 87.676 88.676 -3.8083 0 0 0 0.16232 1 17618 17618 26.268 4.5215 1 52503 5427 34906 34927 51379 51379 -0.05097905442539741 VTEKKVVI 8 Unmodified _VTEKKVVI_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2395935058594 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 98.579 1 94.31 93.81 94.81 -4.2692 0 0 0 0.21486 1 18846 18846 5.2307 0 1 52504 5053;26536 34907 34928 51380 51380 0.11936118971038923 VTELVRDF 8 Unmodified _VTELVRDF_ 0 0 0 REV__nc|ENSG00000092200|Q96KN7-6|RPGRIP1 REV__nc|ENSG00000092200|Q96KN7-6|RPGRIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.265869140625 2 489.766374 977.518196 0.33331 0.00016324 -1.0171 -0.00049816 -0.68384 -0.00033492 489.7662889038959 75.086 0.355 75.086 74.921 75.276 0 14 9 2 0 0 0 1.0011 1 14551 14551 4.3292 0 1 1591000 + 52505 14583 34908 34929 51381 51381 0.028537675519032746 VTEMEKTDL 9 Unmodified _VTEMEKTDL_ 0 0 0 nc|ENSG00000197969|Q96RL7-2|VPS13A;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2864990234375 2 533.260265 1064.50598 NaN NaN NaN NaN NaN NaN NaN 158.25 1 158.25 157.75 158.75 0 0 0 0 0.20628 1 31770 31770 21.747 1.293 1 52506 12546 34909 34930 51382 51382 -0.023696369734580003 VTEMEQSP 8 Unmodified _VTEMEQSP_ 0 0 0 ENST00000556782.5_1_14:45553435-45564778:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39 ENST00000556782.5_1_14:45553435-45564778:+|nuORF ENST00000556782.5_1_14:45553435-45564778:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2294616699219 2 460.705125 919.395698 -0.11428 -5.2651E-05 2.0247 0.0009328 1.9104 0.00088014 460.70607161868116 111.78 0.45361 107.29 107.03 107.48 -4.4915 21 12 2 0 0 0 0.72565 1 21441 21441 20.454 0 1 1296000 52507 6970 34910 34931 51383 51383 -0.06722437241830903 VTEMYQFKFKY 11 Unmodified _VTEMYQFKFKY_ 0 0 0 ENSG00000176635|ENST00000336726|HORMAD2 ENSG00000176635|ENST00000336726|HORMAD2 ENSG00000176635|ENST00000336726|HORMAD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3679809570312 2 742.368138 1482.72172 NaN NaN NaN NaN NaN NaN NaN 132.34 1 132.34 131.84 132.84 0 0 0 0 0.23324 1 26161 26161 5.7319 0.83484 1 52508 6478 34911 34932 51384 51384 -0.00032875788815545093 VTENSYCN 8 Unmodified _VTENSYCN_ 0 0 0 REV__ENSG00000186335|ENST00000335244|SLC36A2 REV__ENSG00000186335|ENST00000335244|SLC36A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2462158203125 2 465.1871 928.359646 NaN NaN NaN NaN NaN NaN NaN 127.75 0.99999 123.13 122.63 123.63 -4.6172 0 0 0 0.22934 1 25190 25190 0.063987 0 1 + 52509 19027 34912 34933 51385 51385 -0.10739894418702534 VTEQLQVNL 9 Unmodified _VTEQLQVNL_ 0 0 0 REV__TUBGCP5|p.A765T|1|0.14|ENSG00000275835|chr15:23008733-23008733|C/T|missense_variant REV__TUBGCP5|p.A765T|1|0.14|ENSG00000275835|chr15:23008733-23008733|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2568969726562 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 154.17 1 149.4 148.9 149.9 -4.7684 0 0 0 0.23508 1 30641 30641 7.9102 0 1 + 52510 25503 34913 34934 51386 51386 0.04629421752088092 VTESPSLASVP 11 Unmodified _VTESPSLASVP_ 0 0 0 CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7886352539062 2 543.787504 1085.56045 NaN NaN NaN NaN NaN NaN NaN 155.86 1 150.58 150.08 151.08 -5.2854 0 0 0 0.22943 1 30233 30233 8.7454 1.4562 1 52511 495 34914 34935 51387 51387 0.021096981696246075 VTETERNI 8 Unmodified _VTETERNI_ 0 0 0 REV__tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1 REV__tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24072265625 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 152.23 1 147.47 146.97 147.97 -4.7523 0 0 0 0.20896 1 30246 30246 18.135 3.5533 1 + 52512 24885 34915 34936 51388 51388 0.005799891668516466 VTETERNI 8 Unmodified _VTETERNI_ 0 0 0 REV__tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1 REV__tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2508850097656 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 152.24 1 147.49 146.99 147.99 -4.7523 0 0 0 0.20896 1 30249 30249 18.135 2.2878 1 + 52513 24885 34915 34936 51389 51389 0.005799891668516466 VTETERNI 8 Unmodified _VTETERNI_ 0 0 0 REV__tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1 REV__tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2508850097656 2 481.251089 960.487624 0.17266 8.3091E-05 -0.72688 -0.00034981 -0.55422 -0.00026672 481.25074098164595 152.79 0.66927 147.52 147.15 147.81 -5.2669 30 18 2 0 0 0 0.60622 2 29631 29585;29631 21.747 7.165 1 2419300 + 52514 24885 34915 34936 51390;51391 51391 0.005799891668516466 VTEVFVLL 8 Unmodified _VTEVFVLL_ 0 0 0 REV__ENST00000529784.5_1_12:104681148-104703566:+|nuORF REV__ENST00000529784.5_1_12:104681148-104703566:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2427673339844 2 460.278586 918.54262 NaN NaN NaN NaN NaN NaN NaN 111.5 1 107.27 106.77 107.77 -4.2289 0 0 0 0.22676 1 21463 21463 0.30703 0 1 + 52515 22675 34916 34937 51392 51392 0.08009027705429617 VTEVILYMI 9 Unmodified _VTEVILYMI_ 0 0 0 REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2722778320312 2 540.804111 1079.59367 0.19268 0.0001042 2.6583 0.0014376 2.851 0.0015418 541.3076913110945 147.31 0.34755 142.16 141.92 142.26 -5.1557 13 9 2 0 0 0 0.76082 1 28475 28475 8.5933 0.68312 1 8247200 + 52516 16699 34917 34938 51393 51393 0.05705608687981112 VTEVYINARS 10 Unmodified _VTEVYINARS_ 0 0 0 tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1 tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1 tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3150634765625 2 576.306395 1150.59824 NaN NaN NaN NaN NaN NaN NaN 144.18 1 139.11 138.61 139.61 -5.0671 0 0 0 0.22588 1 27805 27805 9.3831 1.2276 1 52517 26189 34918 34939 51394 51394 0.028962091550738478 VTEWERLSRHE 11 Unmodified _VTEWERLSRHE_ 0 0 0 REV__ENST00000256935.12_1_5:169509883-169510066:+|nuORF REV__ENST00000256935.12_1_5:169509883-169510066:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2372741699219 3 481.244268 1440.71098 0.11845 5.7005E-05 1.7046 0.00082032 1.823 0.00087733 481.2452424399842 127.28 0.62076 122.66 122.3 122.92 -4.6172 22 17 2 0 0 0 0.79196 2 25040 25040;25056 4.7159 1.8726 1 1573800 + 52518 20136 34919 34940 51395;51396 51395 0.008248578811389962 VTFEDTAVSL 10 Unmodified _VTFEDTAVSL_ 0 0 0 ENST00000481881.1_1_7:99096270-99097704:-|nuORF;ZNF394|p.F346Lfs*56|1|0.31|ENSG00000160908|chr7:99494177-99494177|A/-|frameshift_variant;ENSG00000160908|ENST00000337673|ZNF394 ENST00000481881.1_1_7:99096270-99097704:-|nuORF ENST00000481881.1_1_7:99096270-99097704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2730712890625 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 139.68 1 139.68 139.18 140.18 0 0 0 0 0.22583 1 27777 27777 13.906 3.0821 1 52519 5273 34920 34941 51397 51397 -0.0031399072172462184 VTFEDTAVSL 10 Unmodified _VTFEDTAVSL_ 0 0 0 ENST00000481881.1_1_7:99096270-99097704:-|nuORF;ZNF394|p.F346Lfs*56|1|0.31|ENSG00000160908|chr7:99494177-99494177|A/-|frameshift_variant;ENSG00000160908|ENST00000337673|ZNF394 ENST00000481881.1_1_7:99096270-99097704:-|nuORF ENST00000481881.1_1_7:99096270-99097704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2808227539062 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 140.16 1 140.16 139.66 140.66 0 0 0 0 0.22583 1 27890 27890 13.906 3.0821 1 52520 5273 34920 34941 51398 51398 -0.0031399072172462184 VTFEDTAVSL 10 Unmodified _VTFEDTAVSL_ 0 0 0 ENST00000481881.1_1_7:99096270-99097704:-|nuORF;ZNF394|p.F346Lfs*56|1|0.31|ENSG00000160908|chr7:99494177-99494177|A/-|frameshift_variant;ENSG00000160908|ENST00000337673|ZNF394 ENST00000481881.1_1_7:99096270-99097704:-|nuORF ENST00000481881.1_1_7:99096270-99097704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.275146484375 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 140.18 1 140.18 139.68 140.68 0 0 0 0 0.22588 1 27896 27896 9.3831 0.63772 1 52521 5273 34920 34941 51399 51399 -0.0031399072172462184 VTFEDTAVSL 10 Unmodified _VTFEDTAVSL_ 0 0 0 ENST00000481881.1_1_7:99096270-99097704:-|nuORF;ZNF394|p.F346Lfs*56|1|0.31|ENSG00000160908|chr7:99494177-99494177|A/-|frameshift_variant;ENSG00000160908|ENST00000337673|ZNF394 ENST00000481881.1_1_7:99096270-99097704:-|nuORF ENST00000481881.1_1_7:99096270-99097704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2675170898438 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 140.75 1 140.75 140.25 141.25 0 0 0 0 0.22588 1 28030 28030 9.3831 0 1 52522 5273 34920 34941 51400 51400 -0.0031399072172462184 VTFEDTAVSL 10 Unmodified _VTFEDTAVSL_ 0 0 0 ENST00000481881.1_1_7:99096270-99097704:-|nuORF;ZNF394|p.F346Lfs*56|1|0.31|ENSG00000160908|chr7:99494177-99494177|A/-|frameshift_variant;ENSG00000160908|ENST00000337673|ZNF394 ENST00000481881.1_1_7:99096270-99097704:-|nuORF ENST00000481881.1_1_7:99096270-99097704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2747802734375 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 141.03 1 141.03 140.53 141.53 0 0 0 0 0.22588 1 28091 28091 9.3831 0.63772 1 52523 5273 34920 34941 51401 51401 -0.0031399072172462184 VTFEDTAVSL 10 Unmodified _VTFEDTAVSL_ 0 0 0 ENST00000481881.1_1_7:99096270-99097704:-|nuORF;ZNF394|p.F346Lfs*56|1|0.31|ENSG00000160908|chr7:99494177-99494177|A/-|frameshift_variant;ENSG00000160908|ENST00000337673|ZNF394 ENST00000481881.1_1_7:99096270-99097704:-|nuORF ENST00000481881.1_1_7:99096270-99097704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2744140625 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 141.67 1 141.67 141.17 142.17 0 0 0 0 0.22583 1 28234 28234 13.906 3.8321 1 52524 5273 34920 34941 51402 51402 -0.0031399072172462184 VTFEDTAVSL 10 Unmodified _VTFEDTAVSL_ 0 0 0 ENST00000481881.1_1_7:99096270-99097704:-|nuORF;ZNF394|p.F346Lfs*56|1|0.31|ENSG00000160908|chr7:99494177-99494177|A/-|frameshift_variant;ENSG00000160908|ENST00000337673|ZNF394 ENST00000481881.1_1_7:99096270-99097704:-|nuORF ENST00000481881.1_1_7:99096270-99097704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2589111328125 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 143.63 1 138.97 138.47 139.47 -4.656 0 0 0 0.22588 1 28412 28412 9.3831 0.63772 1 52525 5273 34920 34941 51403 51403 -0.0031399072172462184 VTFEDTAVSL 10 Unmodified _VTFEDTAVSL_ 0 0 0 ENST00000481881.1_1_7:99096270-99097704:-|nuORF;ZNF394|p.F346Lfs*56|1|0.31|ENSG00000160908|chr7:99494177-99494177|A/-|frameshift_variant;ENSG00000160908|ENST00000337673|ZNF394 ENST00000481881.1_1_7:99096270-99097704:-|nuORF ENST00000481881.1_1_7:99096270-99097704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.266845703125 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 144.41 1 139.75 139.25 140.25 -4.6694 0 0 0 0.22588 1 28595 28595 9.3831 0 1 52526 5273 34920 34941 51404 51404 -0.0031399072172462184 VTFEDTAVSL 10 Unmodified _VTFEDTAVSL_ 0 0 0 ENST00000481881.1_1_7:99096270-99097704:-|nuORF;ZNF394|p.F346Lfs*56|1|0.31|ENSG00000160908|chr7:99494177-99494177|A/-|frameshift_variant;ENSG00000160908|ENST00000337673|ZNF394 ENST00000481881.1_1_7:99096270-99097704:-|nuORF ENST00000481881.1_1_7:99096270-99097704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2734985351562 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 145.63 1 140.96 140.46 141.46 -4.6694 0 0 0 0.22583 1 28867 28867 13.906 0 1 52527 5273 34920 34941 51405 51405 -0.0031399072172462184 VTFEDTAVSL 10 Unmodified _VTFEDTAVSL_ 0 0 0 ENST00000481881.1_1_7:99096270-99097704:-|nuORF;ZNF394|p.F346Lfs*56|1|0.31|ENSG00000160908|chr7:99494177-99494177|A/-|frameshift_variant;ENSG00000160908|ENST00000337673|ZNF394 ENST00000481881.1_1_7:99096270-99097704:-|nuORF ENST00000481881.1_1_7:99096270-99097704:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2589111328125 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 146 1 141 140.5 141.5 -5 0 0 0 0.22588 1 28249 28249 9.3831 0 1 52528 5273 34920 34941 51406 51406 -0.0031399072172462184 VTFETNRI 8 Unmodified _VTFETNRI_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26312255859375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 152.53 1 152.53 152.03 153.03 0 0 0 0 0.21452 1 30551 30551 13.508 1.8676 1 + 52529 17221 34921 34942 51407 51407 0.023328834091330464 VTFFTILLSY 10 Unmodified _VTFFTILLSY_ 0 0 0 OR4A15|p.V334*|1|0.34|ENSG00000181958|chr11:55368877-55368877|A/-|frameshift_variant;ENSG00000181958|ENST00000641526|OR4A15;nc|ENSG00000181958|Q8NGL6|OR4A15 OR4A15|p.V334*|1|0.34|ENSG00000181958|chr11:55368877-55368877|A/-|frameshift_variant OR4A15|p.V334*|1|0.34|ENSG00000181958|chr11:55368877-55368877|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2877197265625 2 602.336633 1202.65871 NaN NaN NaN NaN NaN NaN NaN 105.93 1 101.66 101.16 102.16 -4.2638 0 0 0 0.22588 1 20852 20852 6.7232 0.51738 1 52530 6754 34922 34943 51408 51408 0.06548926485493212 VTFGMTDDMIM 11 Unmodified _VTFGMTDDMIM_ 0 0 0 ENSG00000034239|ENST00000262103|CLXN ENSG00000034239|ENST00000262103|CLXN ENSG00000034239|ENST00000262103|CLXN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.76904296875 2 630.769085 1259.52362 NaN NaN NaN NaN NaN NaN NaN 178.95 1 174.04 173.54 174.54 -4.9088 0 0 0 0.22632 1 35704 35704 0 0 1 52531 1165 34923 34944 51409 51409 -0.09576381034480619 VTFHSSNK 8 Unmodified _VTFHSSNK_ 0 0 0 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2385559082031 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 62.593 1 59.353 58.853 59.853 -3.2395 0 0 0 0.17145 1 11734 11734 34.402 0 1 52532 6363 34924 34945 51410 51410 -0.006559587964261482 VTFHYAFDLF 10 Unmodified _VTFHYAFDLF_ 0 0 0 REV__ENSG00000147676|ENST00000614891|MAL2 REV__ENSG00000147676|ENST00000614891|MAL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7657470703125 2 630.308406 1258.60226 NaN NaN NaN NaN NaN NaN NaN 31.723 1 29.492 28.992 29.992 -2.2305 0 0 0 0.22544 1 5765 5765 19.257 5.3509 1 + 52533 16947 34925 34946 51411 51411 -0.016697013512157355 VTFKLLLPR 9 Unmodified _VTFKLLLPR_ 0 0 0 ENST00000361246.6_1_14:103432671-103433458:-|nuORF ENST00000361246.6_1_14:103432671-103433458:-|nuORF ENST00000361246.6_1_14:103432671-103433458:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7926025390625 2 543.855327 1085.6961 NaN NaN NaN NaN NaN NaN NaN 161.44 1 156.65 156.15 157.15 -4.7952 0 0 0 0.23508 1 32107 32107 4.3292 2.0265 1 52534 9022 34926 34947 51412 51412 0.1566806254174935 VTFNALQSY 9 Unmodified _VTFNALQSY_ 0 0 0 ENST00000360655.8_2_11:20140323-20140392:+|nuORF ENST00000360655.8_2_11:20140323-20140392:+|nuORF ENST00000360655.8_2_11:20140323-20140392:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26708984375 2 521.763832 1041.51311 -0.29553 -0.0001542 1.7029 0.0008885 1.4074 0.0007343 522.2666731377655 87.414 0.49594 83.687 83.328 83.824 -3.727 23 13 3 0 0 0 0.34411 1 17082 17082 29.082 9.6426 1 2553400 52535 9014 34927 34948 51413 51413 -0.00598536310712916 VTFNALQSY 9 Unmodified _VTFNALQSY_ 0 0 0 ENST00000360655.8_2_11:20140323-20140392:+|nuORF ENST00000360655.8_2_11:20140323-20140392:+|nuORF ENST00000360655.8_2_11:20140323-20140392:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2576293945312 2 521.763832 1041.51311 -0.39362 -0.00020538 1.7345 0.00090499 1.3409 0.00069961 522.2663073816833 87.553 0.49339 83.557 83.34 83.833 -3.9953 25 13 3 0 0 0 0.46541 2 16647 16647;16653 21.747 8.2388 1 2743700 52536 9014 34927 34948 51414;51415 51414 -0.00598536310712916 VTFNALQSY 9 Unmodified _VTFNALQSY_ 0 0 0 ENST00000360655.8_2_11:20140323-20140392:+|nuORF ENST00000360655.8_2_11:20140323-20140392:+|nuORF ENST00000360655.8_2_11:20140323-20140392:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2666625976562 2 521.763832 1041.51311 0.18915 9.8692E-05 1.4754 0.00076979 1.6645 0.00086849 522.2662771083474 87.378 0.45657 83.649 83.364 83.82 -3.7289 18 12 2 0 0 0 0.55979 1 16688 16688 15.847 2.3393 1 1559800 52537 9014 34927 34948 51416 51416 -0.00598536310712916 VTFNLGQK 8 Unmodified _VTFNLGQK_ 0 0 0 USP40|p.F846Lfs*16|1|0.24|ENSG00000085982|chr2:233510121-233510121|A/-|frameshift_variant USP40|p.F846Lfs*16|1|0.24|ENSG00000085982|chr2:233510121-233510121|A/-|frameshift_variant USP40|p.F846Lfs*16|1|0.24|ENSG00000085982|chr2:233510121-233510121|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.755859375 2 453.75581 905.497067 0.64009 0.00029044 -0.49695 -0.00022549 0.14314 6.4949E-05 453.75557210895624 100.85 0.6397 100.85 100.51 101.15 0 32 17 2 0 0 0 0.71273 1 19827 19827 12.532 0.89125 1 3514300 52538 26561 34928 34949 51417 51417 0.04053802243049631 VTFTLQQLN 9 Unmodified _VTFTLQQLN_ 0 0 0 ENSG00000101000|ENST00000216968|PROCR ENSG00000101000|ENST00000216968|PROCR ENSG00000101000|ENST00000216968|PROCR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.279541015625 2 532.292756 1062.57096 -0.19664 -0.00010467 -0.04722 -2.5135E-05 -0.24386 -0.0001298 532.292734306061 105.22 0.77666 100.95 100.53 101.31 -4.2638 53 21 3 0 0 0 0.19983 1 20715 20715 2.6312 0 1 6230700 52539 2030 34929 34950 51418 51418 0.04217725614716983 VTFVDGYK 8 Unmodified _VTFVDGYK_ 0 0 0 REV__CYP2B6|p.I101Sfs*13|1|0.22|ENSG00000197408|chr19:41004126-41004126|A/-|frameshift_variant REV__CYP2B6|p.I101Sfs*13|1|0.22|ENSG00000197408|chr19:41004126-41004126|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1651916503906 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 138.65 1 134.01 133.51 134.51 -4.6439 0 0 0 0.23584 1 27378 27378 0.12286 0 1 + 52540 13627 34930 34951 51419 51419 0.00354693631857117 VTGAKQVNY 9 Unmodified _VTGAKQVNY_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2643127441406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 47.568 1 44.626 44.126 45.126 -2.9421 0 0 0 0.044386 1 8675 8675 4.477 0 1 52541 1105 34931 34952 51420 51420 0.023328834091330464 VTGDAALKE 9 Unmodified _VTGDAALKE_ 0 0 0 REV__ENST00000442459.2_1_1:16342077-16343748:-|nuORF REV__ENST00000442459.2_1_1:16342077-16343748:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7474670410156 2 452.242732 902.470912 -0.33192 -0.00015011 0.42039 0.00019012 0.088467 4.0009E-05 452.24289080192176 53.646 0.76475 50.762 50.385 51.15 -2.8837 63 21 4 0 0 0 0.40602 1 10201 10201 25.399 3.6527 1 41646000 + 52542 18366 34932 34953 51421 51421 0.015774882808955226 VTGDAALKE 9 Unmodified _VTGDAALKE_ 0 0 0 REV__ENST00000442459.2_1_1:16342077-16343748:-|nuORF REV__ENST00000442459.2_1_1:16342077-16343748:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 452.242732 902.470912 0.38976 0.00017627 -0.25668 -0.00011608 0.13308 6.0186E-05 452.2425720919918 50.972 0.80005 50.972 50.504 51.304 0 0.063805 -0.00042967 NaN 25.399 67 22 4 NaN NaN NaN NaN 0 NaN NaN 0 31059000 + 52543 18366 34932 34953 0.015774882808955226 VTGDAALKE 9 Unmodified _VTGDAALKE_ 0 0 0 REV__ENST00000442459.2_1_1:16342077-16343748:-|nuORF REV__ENST00000442459.2_1_1:16342077-16343748:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 452.242732 902.470912 -0.33192 -0.00015011 0.42039 0.00019012 0.088467 4.0009E-05 452.24289080192176 53.646 0.76475 50.762 50.385 51.15 -2.8837 -0.1462 0.00018272 NaN 25.399 63 21 4 NaN NaN NaN NaN 0 NaN NaN 0 41646000 + 52544 18366 34932 34953 0.015774882808955226 VTGDDMVGL 9 Unmodified _VTGDDMVGL_ 0 0 0 REV__nc|ENSG00000198589|P50851-2|LRBA REV__nc|ENSG00000198589|P50851-2|LRBA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7678527832031 2 453.715493 905.416433 NaN NaN NaN NaN NaN NaN NaN 115 1 110.69 110.19 111.19 -4.3136 0 0 0 0.21848 1 22141 22141 18.135 1.1927 1 + 52545 19425 34933 34954 51422 51422 -0.040058468621509746 VTGDHECL 8 Unmodified _VTGDHECL_ 0 0 0 ENSG00000118804|ENST00000237642|STBD1 ENSG00000118804|ENST00000237642|STBD1 ENSG00000118804|ENST00000237642|STBD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2358093261719 2 437.192185 872.369817 NaN NaN NaN NaN NaN NaN NaN 69.734 1 66.555 66.055 67.055 -3.1796 0 0 0 0.21486 1 13561 13561 5.7604 0 1 52546 3050 34934 34955 51423 51423 -0.07147286693464139 VTGEKSLQENR 11 Unmodified _VTGEKSLQENR_ 0 0 0 ENSG00000239642|ENST00000442687|MEIKIN ENSG00000239642|ENST00000442687|MEIKIN ENSG00000239642|ENST00000442687|MEIKIN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7738037109375 2 630.830766 1259.64698 NaN NaN NaN NaN NaN NaN NaN 128.04 1 123.42 122.92 123.92 -4.6172 0 0 0 0.15347 1 25247 25247 27.629 10.186 1 52547 7836 34935 34956 51424 51424 0.027540777241711112 VTGELGLAL 9 Unmodified _VTGELGLAL_ 0 0 0 GNL1|p.P258Lfs*14|1|0.32|ENSG00000204590|chr6:30553387-30553387|A/-|frameshift_variant;nc|ENSG00000204590|P36915-2|GNL1;ENSG00000204590|ENST00000376621|GNL1 GNL1|p.P258Lfs*14|1|0.32|ENSG00000204590|chr6:30553387-30553387|A/-|frameshift_variant GNL1|p.P258Lfs*14|1|0.32|ENSG00000204590|chr6:30553387-30553387|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2178039550781 2 436.758018 871.501483 -0.088091 -3.8474E-05 0.083605 3.6515E-05 -0.0044859 -1.9593E-06 436.757986701234 63.846 0.63006 60.848 60.555 61.186 -2.9975 39 17 3 0 0 0 0.042631 1 12326 12326 74.423 7.0789 1 5589100 52548 7593 34936 34957 51425 51425 0.060592666659431416 VTGELGLAL 9 Unmodified _VTGELGLAL_ 0 0 0 GNL1|p.P258Lfs*14|1|0.32|ENSG00000204590|chr6:30553387-30553387|A/-|frameshift_variant;nc|ENSG00000204590|P36915-2|GNL1;ENSG00000204590|ENST00000376621|GNL1 GNL1|p.P258Lfs*14|1|0.32|ENSG00000204590|chr6:30553387-30553387|A/-|frameshift_variant GNL1|p.P258Lfs*14|1|0.32|ENSG00000204590|chr6:30553387-30553387|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2360534667969 2 436.758018 871.501483 0.16032 7.0022E-05 -0.18073 -7.8936E-05 -0.02041 -8.9143E-06 436.7578935074352 64.371 0.70605 60.913 60.591 61.297 -3.4581 45 19 3 0 0 0 0.015242 1 12036 12036 97.075 4.2525 1 5721000 52549 7593 34936 34957 51426 51426 0.060592666659431416 VTGELGLAL 9 Unmodified _VTGELGLAL_ 0 0 0 GNL1|p.P258Lfs*14|1|0.32|ENSG00000204590|chr6:30553387-30553387|A/-|frameshift_variant;nc|ENSG00000204590|P36915-2|GNL1;ENSG00000204590|ENST00000376621|GNL1 GNL1|p.P258Lfs*14|1|0.32|ENSG00000204590|chr6:30553387-30553387|A/-|frameshift_variant GNL1|p.P258Lfs*14|1|0.32|ENSG00000204590|chr6:30553387-30553387|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21759033203125 2 436.758018 871.501483 0.10089 4.4063E-05 -0.19635 -8.5757E-05 -0.095463 -4.1694E-05 436.75788495121327 64.191 0.73699 60.934 60.606 61.343 -3.2567 46 20 3 0 0 0 0.0277 1 12052 12052 74.423 0 1 5859200 52550 7593 34936 34957 51427 51427 0.060592666659431416 VTGEQLRL 8 Unmodified _VTGEQLRL_ 0 0 0 nc|ENSG00000155792|Q8TB45-2|DEPTOR;DEPTOR|p.P301Lfs*10|1|0.35|ENSG00000155792|chr8:120003083-120003083|C/-|frameshift_variant;ENSG00000155792|ENST00000286234|DEPTOR nc|ENSG00000155792|Q8TB45-2|DEPTOR nc|ENSG00000155792|Q8TB45-2|DEPTOR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2387390136719 2 458.266542 914.51853 NaN NaN NaN NaN NaN NaN NaN 99.111 1 99.111 98.611 99.611 0 0 0 0 0.21486 1 19436 19436 5.2307 0 1 52551 820 34937 34958 51428 51428 0.05785187271760606 VTGGEPGLDL 10 Unmodified _VTGGEPGLDL_ 0 0 0 REV__nc|ENSG00000106991|P17813-2|ENG REV__nc|ENSG00000106991|P17813-2|ENG MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7229919433594 2 479.248015 956.481476 -0.007886 -3.7794E-06 -2.8932 -0.0013866 -2.9011 -0.0013904 479.24789420550655 73.715 0.98227 73.715 73.133 74.116 0 60 27 3 0 0 0 0.41575 1 14349 14349 29.082 8.2104 1 6956100 + 52552 15071 34938 34959 51429 51429 0.001494709353323742 VTGIQRCH 8 Unmodified _VTGIQRCH_ 0 0 0 REV__HRG|p.S457T|1|0.32|ENSG00000113905|chr3:186677674-186677674|T/A|missense_variant REV__HRG|p.S457T|1|0.32|ENSG00000113905|chr3:186677674-186677674|T/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2237854003906 2 457.237261 912.45997 1.0378 0.00047453 1.6219 0.00074158 2.6597 0.0012161 457.23677807378164 26.1 0.27164 24.318 24.177 24.449 -1.7821 11 7 3 0 0 0 0.58432 1 4589 4589 23.148 3.7094 1 186260 + 52553 23638 34939 34960 51430 51430 0.0002380742562309024 VTGIRRITTY 10 Unmodified _VTGIRRITTY_ 0 0 0 REV__NBEA|p.V637I|1|0.05|ENSG00000172915|chr13:35110885-35110885|G/A|missense_variant REV__NBEA|p.V637I|1|0.05|ENSG00000172915|chr13:35110885-35110885|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2753295898438 2 590.345855 1178.67716 NaN NaN NaN NaN NaN NaN NaN 57.464 1 54.212 53.712 54.712 -3.2517 0 0 0 0.22569 1 10670 10670 15.847 1.0089 1 + 52554 23920 34940 34961 51431 51431 0.09496481180030969 VTGKFNCSIP 10 Unmodified _VTGKFNCSIP_ 0 0 0 ENSG00000182447|ENST00000327928|OTOL1 ENSG00000182447|ENST00000327928|OTOL1 ENSG00000182447|ENST00000327928|OTOL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2758178710938 2 533.273509 1064.53247 NaN NaN NaN NaN NaN NaN NaN 169.59 1 169.59 169.09 170.09 0 0 0 0 0.22579 1 34815 34815 14.405 4.2548 1 52555 6790 34941 34962 51432 51432 0.00278096708530029 VTGLSPGDRY 10 Unmodified _VTGLSPGDRY_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2848510742188 2 532.772188 1063.52982 0.68496 0.00036493 -2.2231 -0.0011844 -1.5381 -0.00081946 532.7715934523814 92.009 0.17218 87.914 87.842 88.014 -4.0946 6 4 2 0 0 0 0.074859 1 17530 17530 71.922 6.6873 1 1105900 52556 5053 34942 34963 51433 51433 0.0005996457523451681 VTGMAGLA 8 Unmodified _VTGMAGLA_ 0 0 0 ENST00000551730.1_1_19:14710521-14721005:+|nuORF ENST00000551730.1_1_19:14710521-14721005:+|nuORF ENST00000551730.1_1_19:14710521-14721005:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20123291015625 2 360.191457 718.368361 -0.62416 -0.00022482 0.30277 0.00010905 -0.32139 -0.00011576 360.19145476205296 37.81 0.42178 35.342 35.116 35.537 -2.4688 13 11 2 0 0 0 0.70613 1 6981 6981 13.508 0 1 457780 52557 11188 34943 34964 51434 51434 -0.002088759915409355 VTGMAGLA 8 Unmodified _VTGMAGLA_ 0 0 0 ENST00000551730.1_1_19:14710521-14721005:+|nuORF ENST00000551730.1_1_19:14710521-14721005:+|nuORF ENST00000551730.1_1_19:14710521-14721005:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 360.191457 718.368361 -0.21898 -7.8873E-05 0.36369 0.000131 0.14472 5.2126E-05 360.1915342793875 35.678 0.33479 35.678 35.52 35.855 0 0.16829 2.6593E-05 NaN 13.508 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 857880 52558 11188 34943 34964 -0.002088759915409355 VTGNLQQL 8 Unmodified _VTGNLQQL_ 0 0 0 REV__nc|ENSG00000183798|Q9NT22-2|EMILIN3 REV__nc|ENSG00000183798|Q9NT22-2|EMILIN3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21771240234375 2 436.745442 871.476331 0.051962 2.2694E-05 -0.013532 -5.9102E-06 0.038429 1.6784E-05 436.74544173528005 60.721 0.30991 57.407 57.258 57.568 -3.3139 10 8 2 0 0 0 1.0066 1 11311 11311 3.9444 1.6417 1 385360 + 52559 18866 34944 34965 51435 51435 0.03545211863365694 VTGNVLLING 10 Unmodified _VTGNVLLING_ 0 0 0 REV__ENST00000414066.1_1_10:38107898-38108846:-|nuORF REV__ENST00000414066.1_1_10:38107898-38108846:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 500.5851745605469 2 500.295299 998.576045 NaN NaN NaN NaN NaN NaN NaN 161.84 1 161.84 161.34 162.34 0 0 0 0 0.22588 1 32510 32510 8.7454 2.5396 1 + 52560 21442 34945 34966 51436 51436 0.07670029477333173 VTGPELGWG 9 Unmodified _VTGPELGWG_ 0 0 0 ENST00000561204.5_1_19:47919910-47920188:-|nuORF;ENST00000561040.1_1_19:47919951-47920188:-|nuORF ENST00000561204.5_1_19:47919910-47920188:-|nuORF ENST00000561204.5_1_19:47919910-47920188:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23211669921875 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 157.15 1 157.15 156.65 157.65 0 0 0 0 0.22251 1 31535 31535 16.942 0 1 52561 11297 34946 34967 51437 51437 -0.010864770279454206 VTGPPGRIGDI 11 Unmodified _VTGPPGRIGDI_ 0 0 0 REV__COL5A3|p.P1048Lfs*96|1|0.25|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant REV__COL5A3|p.P1048Lfs*96|1|0.25|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.271484375 2 541.303655 1080.59276 NaN NaN NaN NaN NaN NaN NaN 162.25 1 157.06 156.56 157.56 -5.1878 0 0 0 0.22595 1 31497 31497 11.495 0 1 + 52562 13493 34947 34968 51438 51438 0.05568530363279933 VTGQCTCHA 9 Unmodified _VTGQCTCHA_ 0 0 0 ENSG00000244486|ENST00000622235|SCARF2;nc|ENSG00000244486|Q96GP6|SCARF2 ENSG00000244486|ENST00000622235|SCARF2 ENSG00000244486|ENST00000622235|SCARF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23974609375 2 460.191662 918.368771 -0.10743 -4.944E-05 -0.49932 -0.00022978 -0.60675 -0.00027922 460.1911791765419 41.818 0.60229 39.167 38.934 39.537 -2.651 24 16 2 0 0 0 0.80521 1 7574 7574 3.5965 0 1 407180 52563 7882 34948 34969 51439 51439 -0.0936782433401504 VTGQRPETA 9 Unmodified _VTGQRPETA_ 0 0 0 nc|ENSG00000178467|Q9NXG6-2|P4HTM;ENSG00000178467|ENST00000383729|P4HTM;ENST00000472301.5_1_3:49027419-49042675:+|nuORF;nc|ENSG00000178467|Q9NXG6-3|P4HTM;ENST00000484115.5_1_3:49027419-49028262:+|nuORF nc|ENSG00000178467|Q9NXG6-2|P4HTM nc|ENSG00000178467|Q9NXG6-2|P4HTM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 320.1706237792969 3 320.169929 957.487959 NaN NaN NaN NaN NaN NaN NaN 92.039 1 87.944 87.444 88.444 -4.0946 0 0 0 0.23508 1 17532 17532 2.4985 0 1 52564 6580 34949 34970 51440 51440 0.007514088867196733 VTGRATLRSY 10 Unmodified _VTGRATLRSY_ 0 0 0 REV__nc|ENSG00000054793|O75110-2|ATP9A REV__nc|ENSG00000054793|O75110-2|ATP9A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21160888671875 3 375.212128 1122.61456 -0.46231 -0.00017347 -0.31679 -0.00011886 -0.7791 -0.00029233 375.21199523011813 17.09 0.38045 15.818 15.66 16.041 -1.2722 28 10 4 0 0 0 0.75587 1 2533 2533 3.8763 0.28927 1 11513000 + 52565 14108 34950 34971 51441 51441 0.05815335111856257 VTGRRCQT 8 Unmodified _VTGRRCQT_ 0 0 0 REV__ENST00000394783.7_1_3:52729303-52729457:-|nuORF REV__ENST00000394783.7_1_3:52729303-52729457:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2265319824219 2 460.740168 919.465783 0.12322 5.6771E-05 -0.75098 -0.00034601 -0.62776 -0.00028924 460.739701094713 63.516 0.66399 60.1 59.757 60.421 -3.4158 39 18 3 0 0 0 0.97173 1 11920 11920 18.135 0 1 5131000 + 52566 21250 34951 34972 51442 51442 0.0028290593729707325 VTGRYGEGQGQ 11 Unmodified _VTGRYGEGQGQ_ 0 0 0 REV__nc|ENSG00000019991|P14210-3|HGF REV__nc|ENSG00000019991|P14210-3|HGF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.316650390625 2 576.275626 1150.5367 NaN NaN NaN NaN NaN NaN NaN 150.85 1 150.85 150.35 151.35 0 0 0 0 0.23379 1 30204 30204 5.2969 0 1 + 52567 13978 34952 34973 51443 51443 -0.032547225441931005 VTGSSAVSPI 10 Unmodified _VTGSSAVSPI_ 0 0 0 nc|ENSG00000149970|Q8WXI2-4|CNKSR2;nc|ENSG00000149970|Q8WXI2-2|CNKSR2;nc|ENSG00000149970|Q8WXI2-5|CNKSR2;ENSG00000149970|ENST00000379510|CNKSR2 nc|ENSG00000149970|Q8WXI2-4|CNKSR2 nc|ENSG00000149970|Q8WXI2-4|CNKSR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2264709472656 2 459.250557 916.486562 -0.12568 -5.7719E-05 0.59802 0.00027464 0.47233 0.00021692 459.2506326741557 91.726 0.68776 87.801 87.509 88.197 -3.9251 38 19 3 0 0 0 0.61964 1 17991 17991 18.146 1.2041 1 1561300 52568 4818 34953 34974 51444 51444 0.024977747979505693 VTGWEGAPL 9 Unmodified _VTGWEGAPL_ 0 0 0 REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.240234375 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 134.67 1 134.67 134.17 135.17 0 0 0 0 0.13613 1 26662 26662 32.305 1.6689 1 + 52569 13254 34954 34975 51445 51445 -0.0016619051090174253 VTGWEGAPL 9 Unmodified _VTGWEGAPL_ 0 0 0 REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2398986816406 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 139.48 1 134.83 134.33 135.33 -4.6439 0 0 0 0.039428 1 27535 27535 57.471 2.6978 1 + 52570 13254 34954 34975 51446 51446 -0.0016619051090174253 VTGWEGAPL 9 Unmodified _VTGWEGAPL_ 0 0 0 REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.23956298828125 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 139.74 1 135.1 134.6 135.6 -4.6439 0 0 0 0.052972 1 27589 27589 50.855 2.5092 1 + 52571 13254 34954 34975 51447 51447 -0.0016619051090174253 VTGWEGAPL 9 Unmodified _VTGWEGAPL_ 0 0 0 REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2401428222656 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 139.83 1 134.88 134.38 135.38 -4.952 0 0 0 0.091359 1 26905 26905 39.957 1.9833 1 + 52572 13254 34954 34975 51448 51448 -0.0016619051090174253 VTGWEGAPL 9 Unmodified _VTGWEGAPL_ 0 0 0 REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2401428222656 2 465.239993 928.465432 0.038131 1.774E-05 -0.024715 -1.1498E-05 0.013416 6.2419E-06 465.24010005643066 139.79 0.1707 134.84 134.78 134.95 -4.952 5 4 2 0 0 0 0.28156 1 26905 26905 39.957 1.9833 1 1096300 + 52573 13254 34954 34975 51449 51449 -0.0016619051090174253 VTGWEGAPL 9 Unmodified _VTGWEGAPL_ 0 0 0 REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant REV__CAPN10|p.S532Qfs*38|1|0.23|ENSG00000142330|chr2:240596785-240596786|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2391662597656 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 139.59 1 134.74 134.24 135.24 -4.8492 0 0 0 0.091359 1 26912 26912 39.957 1.9833 1 + 52574 13254 34954 34975 51450 51450 -0.0016619051090174253 VTHAIPALQP 10 Unmodified _VTHAIPALQP_ 0 0 0 HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;HTT|p.H2238Ffs*6|1|0.28|ENSG00000197386|chr4:3212643-3212644|CA/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6839599609375 2 523.803291 1045.59203 0.18476 9.6775E-05 0.94095 0.00049287 1.1257 0.00058965 523.8034991736631 139.93 0.13571 139.93 139.81 139.95 0 5 3 2 0 0 0 0.871 1 27817 27817 6.2058 0 1 3876300 52575 7362 34955 34976 51451 51451 0.07105735714230832 VTHGTVAA 8 Unmodified _VTHGTVAA_ 0 0 0 REV__ENST00000565846.2_1_15:56485023-56485380:-|nuORF REV__ENST00000565846.2_1_15:56485023-56485380:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 378.2068176269531 2 378.205953 754.397353 NaN NaN NaN NaN NaN NaN NaN 32.802 1 30.655 30.155 31.155 -2.1468 0 0 0 0.23664 1 5704 5704 3.5871 0 1 + 52576 23116 34956 34977 51452 51452 0.010329846290915157 VTHIQAFNL 9 Unmodified _VTHIQAFNL_ 0 0 0 REV__ENSG00000198947|ENST00000357033|DMD REV__ENSG00000198947|ENST00000357033|DMD MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2584228515625 2 521.787641 1041.56073 -0.60792 -0.00031721 -1.3089 -0.00068296 -1.9168 -0.0010002 522.2877603965409 147.7 0.1402 142.55 142.44 142.58 -5.1557 5 3 2 0 0 0 0.35443 1 28586 28586 28.487 11.374 1 1013800 + 52577 13700 34957 34978 51453 51453 0.04161162680134112 VTHLLHGP 8 Unmodified _VTHLLHGP_ 0 0 0 REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant REV__BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2278137207031 2 437.250695 872.486836 NaN NaN NaN NaN NaN NaN NaN 95.983 1 91.933 91.433 92.433 -4.0496 0 0 0 0.21486 1 18817 18817 9.3474 0.75416 1 + 52578 13214 34958 34979 51454 51454 0.04549239308471442 VTHPPWWAA 9 Unmodified _VTHPPWWAA_ 0 0 0 KCTD19|p.V768Wfs*38|2|0.36|ENSG00000168676|chr16:67291755-67291755|G/-|frameshift_variant KCTD19|p.V768Wfs*38|2|0.36|ENSG00000168676|chr16:67291755-67291755|G/-|frameshift_variant KCTD19|p.V768Wfs*38|2|0.36|ENSG00000168676|chr16:67291755-67291755|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825927734375 2 532.769252 1063.52395 0.00042127 2.2444E-07 3.7239 0.001984 3.7244 0.0019842 533.2719813136093 52.499 0.24866 49.403 49.304 49.553 -3.0954 11 6 2 0 0 0 0.72864 1 9685 9685 23.148 6.0355 1 1122900 52579 11986 34959 34980 51455 51455 -0.005270891457939797 VTHPVTPR 8 Unmodified _VTHPVTPR_ 0 0 0 ENST00000470184.1_1_7:100179334-100179876:-|nuORF ENST00000470184.1_1_7:100179334-100179876:-|nuORF ENST00000470184.1_1_7:100179334-100179876:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7612609863281 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 65.221 1 61.762 61.262 62.262 -3.4581 0 0 0 0.21486 1 12200 12200 11.64 0 1 52580 10195 34960 34981 51456 51456 0.05176624337184421 VTHRLFGHK 9 Unmodified _VTHRLFGHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7732543945312 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 158.78 1 153.99 153.49 154.49 -4.7952 0 0 0 0.23508 1 31577 31577 10.074 1.9184 1 + 52581 15082 34961 34982 51457 51457 0.07143379902504421 VTHYYDGENY 10 Unmodified _VTHYYDGENY_ 0 0 0 REV__ENSG00000072682|ENST00000360568|P4HA2 REV__ENSG00000072682|ENST00000360568|P4HA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7579345703125 2 630.762017 1259.50948 NaN NaN NaN NaN NaN NaN NaN 121.87 1 117.34 116.84 117.84 -4.5305 0 0 0 0.22588 1 23461 23461 3.9444 0 1 + 52582 14290 34962 34983 51458 51458 -0.10989250875218204 VTIFGICMG 9 Unmodified _VTIFGICMG_ 0 0 0 tr|U7SZW3|U7SZW3_FUSNUCarbamoylphosphatesynthasesmallchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carAPE=3SV=1 tr|U7SZW3|U7SZW3_FUSNUCarbamoylphosphatesynthasesmallchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carAPE=3SV=1 tr|U7SZW3|U7SZW3_FUSNUCarbamoylphosphatesynthasesmallchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.1755065917969 3 314.159208 939.455795 NaN NaN NaN NaN NaN NaN NaN 105.6 1 101.22 100.72 101.72 -4.3764 0 0 0 0.23508 1 20245 20245 4.897 0 1 52583 26305 34963 34984 51459 51459 -0.016354181122778755 VTIGLHGVATI 11 Unmodified _VTIGLHGVATI_ 0 0 0 REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant REV__ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.267333984375 2 540.824224 1079.63389 0.55977 0.00030274 3.6202 0.0019579 4.18 0.0022606 540.8248934250436 164.09 0.10489 159.03 158.97 159.07 -5.0648 4 2 2 0 0 0 0.64855 1 31960 31960 15.248 3.0078 1 4726500 + 52584 13114 34964 34985 51460 51460 0.09726291402762399 VTIHYTFY 8 Unmodified _VTIHYTFY_ 0 0 0 REV__ENSG00000205863|ENST00000382137|C1QTNF9B REV__ENSG00000205863|ENST00000382137|C1QTNF9B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2612915039062 2 522.263468 1042.51238 NaN NaN NaN NaN NaN NaN NaN 134.78 1 129.91 129.41 130.41 -4.8726 0 0 0 0.21323 1 25890 25890 14.582 1.0738 1 + 52585 19604 34965 34986 51461 51461 -0.0071733095976469485 VTIKNDLKL 9 Unmodified _VTIKNDLKL_ 0 0 0 nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1;IQCA1|p.N612Kfs*25|1|0.24|ENSG00000132321|chr2:236363813-236363814|-/T|frameshift_variant;nc|ENSG00000132321|Q86XH1-2|IQCA1;IQCA1|p.A277T|1|0.37|ENSG00000132321|chr2:236465602-236465602|C/T|missense_variant;IQCA1|p.Q369Tfs*10|1|0.17|ENSG00000132321|chr2:236419178-236419179|-/T|frameshift_variant nc|ENSG00000132321|Q86XH1-5|IQCA1;IQCA1|p.Q369Tfs*10|1|0.17|ENSG00000132321|chr2:236419178-236419179|-/T|frameshift_variant nc|ENSG00000132321|Q86XH1-5|IQCA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2618408203125 2 522.326599 1042.63865 NaN NaN NaN NaN NaN NaN NaN 129.16 1 124.35 123.85 124.85 -4.817 0 0 0 0.23508 1 24795 24795 10.074 0 1 52586 3715;11950 34966 34987 51462 51462 0.11903175545512568 VTILWEYY 8 Unmodified _VTILWEYY_ 0 0 0 MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant;ENSG00000146263|ENST00000683635|MMS22L;ENST00000509383.5_1_6:97679279-97717985:-|nuORF MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant MMS22L|p.V934Ffs*8|1|0.2|ENSG00000146263|chr6:97173103-97173103|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.791015625 2 543.778951 1085.54335 NaN NaN NaN NaN NaN NaN NaN 155.82 1 150.57 150.07 151.07 -5.2526 0 0 0 0.21486 1 30217 30217 10.183 0.10947 1 52587 4648 34967 34988 51463 51463 0.0039982235448405845 VTISSFVIDL 10 Unmodified _VTISSFVIDL_ 0 0 0 REV__ENSG00000166884|ENST00000300127|OR4D6 REV__ENSG00000166884|ENST00000300127|OR4D6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7899780273438 2 547.310615 1092.60668 0.12826 7.02E-05 0.53287 0.00029165 0.66114 0.00036185 547.3107762751087 144.79 0.54996 139.72 139.46 140.01 -5.0671 29 15 2 0 0 0 0.48672 1 27888 27888 25.399 0 1 5171600 + 52588 17883 34968 34989 51464 51464 0.06407763071729278 VTISSFVIDL 10 Unmodified _VTISSFVIDL_ 0 0 0 REV__ENSG00000166884|ENST00000300127|OR4D6 REV__ENSG00000166884|ENST00000300127|OR4D6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7822875976562 2 547.310615 1092.60668 0.26137 0.00014305 1.1432 0.00062567 1.4046 0.00076873 547.3108087564268 131.47 0.6496 126.7 126.42 127.07 -4.7725 21 17 2 0 0 0 1.1041 1 25346 25346 5.8681 0 1 1453000 + 52589 17883 34968 34989 51465 51465 0.06407763071729278 VTISTIAM 8 Unmodified _VTISTIAM_ 0 0 0 nc|ENSG00000149516|Q96HJ5-3|MS4A3;nc|ENSG00000149516|Q96HJ5-2|MS4A3;ENSG00000149516|ENST00000278865|MS4A3 nc|ENSG00000149516|Q96HJ5-3|MS4A3 nc|ENSG00000149516|Q96HJ5-3|MS4A3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 418.24420166015625 2 418.233322 834.45209 NaN NaN NaN NaN NaN NaN NaN 73.127 1 69.588 69.088 70.088 -3.5385 0 0 0 0.21486 1 13874 13874 2.5775 0 1 52590 4795 34969 34990 51466 51466 0.02824235385492102 VTIVVKLFK 9 Unmodified _VTIVVKLFK_ 0 0 0 REV__ENST00000369325.7_1_6:91263245-91266233:-|nuORF REV__ENST00000369325.7_1_6:91263245-91266233:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6923828125 2 523.852253 1045.68995 -0.096656 -5.0634E-05 -2.7413 -0.001436 -2.8379 -0.0014867 523.8497487050324 145.22 0.17094 140.55 140.48 140.65 -4.6694 7 4 3 0 0 0 0.64208 1 28800 28800 0 0 1 1063300 + 52591 20959 34970 34991 51467 51467 0.16893544310232755 VTIWFIAL 8 Unmodified _VTIWFIAL_ 0 0 0 REV__ENST00000505555.5_1_5:218470-251793:+|nuORF REV__ENST00000505555.5_1_5:218470-251793:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7879943847656 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 132.81 1 128.17 127.67 128.67 -4.6399 0 0 0 0.2074 1 26184 26184 19.439 0 1 + 52592 22477 34971 34992 51468 51468 0.08137037804931424 VTIWWGGP 8 Unmodified _VTIWWGGP_ 0 0 0 REV__ENST00000518145.1_1_8:103358389-103359193:-|nuORF REV__ENST00000518145.1_1_8:103358389-103359193:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386474609375 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 59.398 1 59.398 58.898 59.898 0 0 0 0 0.21323 1 11380 11380 14.582 2.9414 1 + 52593 22603 34972 34993 51469 51469 0.004384345599078188 VTIWWGGP 8 Unmodified _VTIWWGGP_ 0 0 0 REV__ENST00000518145.1_1_8:103358389-103359193:-|nuORF REV__ENST00000518145.1_1_8:103358389-103359193:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2386779785156 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 61.939 1 58.57 58.07 59.07 -3.3694 0 0 0 0.21323 1 11554 11554 14.582 2.0501 1 + 52594 22603 34972 34993 51470 51470 0.004384345599078188 VTIYRHQEYY 10 Unmodified _VTIYRHQEYY_ 0 0 0 nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant;PIEZO2|p.Y2489Sfs*7|1|0.06|ENSG00000154864|chr18:10680346-10680347|-/GG|frameshift_variant;PIEZO2|p.L2716Ffs*33|1|0.12|ENSG00000154864|chr18:10671638-10671639|-/A|frameshift_variant nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5-2|PIEZO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23760986328125 3 457.894577 1370.6619 0.514 0.00023536 -0.50964 -0.00023336 0.0043509 1.9923E-06 457.8943068740301 99.446 0.62987 99.446 99.127 99.757 0 31 17 2 0 0 0 0.76216 1 19483 19483 1.9064 1.9064 1 2546300 52595 5030 34973 34994 51471 51471 -0.008604304078062341 VTIYRHQEYY 10 Unmodified _VTIYRHQEYY_ 0 0 0 nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant;PIEZO2|p.Y2489Sfs*7|1|0.06|ENSG00000154864|chr18:10680346-10680347|-/GG|frameshift_variant;PIEZO2|p.L2716Ffs*33|1|0.12|ENSG00000154864|chr18:10671638-10671639|-/A|frameshift_variant nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5-2|PIEZO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22906494140625 3 457.894577 1370.6619 -0.23077 -0.00010567 0.53693 0.00024586 0.30617 0.00014019 457.8948406788171 103.75 0.77929 99.527 99.111 99.89 -4.2183 53 22 3 0 0 0 0.76317 1 20322 20322 1.5923 0.13716 1 4531800 52596 5030 34973 34994 51472 51472 -0.008604304078062341 VTIYVKVT 8 Unmodified _VTIYVKVT_ 0 0 0 REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.528564453125 2 461.784036 921.553519 NaN NaN NaN NaN NaN NaN NaN 124.69 1 124.69 124.19 125.19 0 0 0 0 0.23782 1 24589 24589 0.0082765 0 1 + 52597 13346 34974 34995 51473 51473 0.08960430079707749 VTIYVKVTSD 10 Unmodified _VTIYVKVTSD_ 0 0 0 REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant REV__CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.21539306640625 3 375.544773 1123.61249 -0.2666 -0.00010012 -2.2276 -0.00083656 -2.4942 -0.00093668 375.878413422415 15.002 0.66848 15.002 14.457 15.125 0 24 18 2 0 0 0 0.91149 1 2249 2249 0.56317 0 1 1324100 + 52598 13346 34975 34996 51474 51474 0.05562861583371159 VTKGQAENRS 10 Unmodified _VTKGQAENRS_ 0 0 0 REV__nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 REV__nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.88494873046875 3 363.859755 1088.55744 NaN NaN NaN NaN NaN NaN NaN 9.208 1 9.208 8.708 9.708 0 0 0 0 0.22588 1 1041 1041 0 0 1 + 52599 18348 34976 34997 51475 51475 0.01669867835448713 VTKGQAENRS 10 Unmodified _VTKGQAENRS_ 0 0 0 REV__nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 REV__nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.9096984863281 3 363.859755 1088.55744 NaN NaN NaN NaN NaN NaN NaN 9.3032 1 9.3032 8.8032 9.8032 0 0 0 0 0.22588 1 1061 1061 0 0 1 + 52600 18348 34976 34997 51476 51476 0.01669867835448713 VTKGSLKIKI 10 Unmodified _VTKGSLKIKI_ 0 0 0 REV__ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant REV__ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 362.91253662109375 3 362.91302 1085.71723 NaN NaN NaN NaN NaN NaN NaN 10.01 1 10.01 9.51 10.51 0 0 0 0 0.22588 1 1219 1219 0 0 1 + 52601 18227 34977 34998 51477 51477 0.1778002785058561 VTKINPPPP 9 Unmodified _VTKINPPPP_ 0 0 0 TULP4|p.L1009Cfs*15|1|0.42|ENSG00000130338|chr6:158502683-158502683|C/-|frameshift_variant;ENSG00000130338|ENST00000367097|TULP4 TULP4|p.L1009Cfs*15|1|0.42|ENSG00000130338|chr6:158502683-158502683|C/-|frameshift_variant TULP4|p.L1009Cfs*15|1|0.42|ENSG00000130338|chr6:158502683-158502683|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.78765869140625 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 22.324 1 20.535 20.035 21.035 -1.7886 0 0 0 0.21848 1 3538 3538 18.135 4.6271 1 52602 3603 34978 34999 51478 51478 0.07734948311224343 VTKKKKKKKK 10 Unmodified _VTKKKKKKKK_ 0 0 0 AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7526245117188 2 622.450457 1242.88636 NaN NaN NaN NaN NaN NaN NaN 148.24 1 143.18 142.68 143.68 -5.0595 0 0 0 0.22588 1 28710 28710 1.6526 0 1 52603 139 34979 35000 51479 51479 0.27463349203958387 VTKKLVKLAYP 11 Unmodified _VTKKLVKLAYP_ 0 0 0 REV__ENSG00000152495|ENST00000282356|CAMK4 REV__ENSG00000152495|ENST00000282356|CAMK4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.763671875 2 630.407924 1258.80129 NaN NaN NaN NaN NaN NaN NaN 170.13 1 165.25 164.75 165.75 -4.873 0 0 0 0.2367 1 33649 33649 2.9952 0 1 + 52604 17113 34980 35001 51480 51480 0.1822455894750874 VTKLEPPIL 9 Unmodified _VTKLEPPIL_ 0 0 0 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 505.1380920410156 2 505.318243 1008.62193 -0.014021 -7.0851E-06 0.19769 9.9898E-05 0.18367 9.2813E-05 505.8194642948273 140.55 0.95366 135.9 135.31 136.26 -4.6493 39 26 2 0 0 0 0.8204 1 27680 27680 8.5933 0 1 1876800 + 52605 17121 34981 35002 51481 51481 0.11796674659569817 VTKLEPPIL 9 Unmodified _VTKLEPPIL_ 0 0 0 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 505.318243 1008.62193 0.19909 0.0001006 -0.088107 -4.4522E-05 0.11098 5.6083E-05 505.3184526126204 136.13 0.70062 136.13 135.85 136.55 0 0.14242 -0.00035922 NaN 8.5933 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2594600 + 52606 17121 34981 35002 0.11796674659569817 VTKLEPPIL 9 Unmodified _VTKLEPPIL_ 0 0 0 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 505.318243 1008.62193 -0.22066 -0.00011151 0.6869 0.0003471 0.46623 0.0002356 505.31841874397173 140.93 0.56146 135.94 135.53 136.1 -4.9877 -0.049277 0.00042403 NaN 8.5933 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1424400 + 52607 17121 34981 35002 0.11796674659569817 VTKLVMLVK 9 Unmodified _VTKLVMLVK_ 0 0 0 nc|ENSG00000174527|Q8N1T3-3|MYO1H;nc|ENSG00000174527|Q8N1T3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H nc|ENSG00000174527|Q8N1T3-3|MYO1H nc|ENSG00000174527|Q8N1T3-3|MYO1H MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 344.2877197265625 3 344.227951 1029.66202 NaN NaN NaN NaN NaN NaN NaN 4.9072 1 3.8672 3.3672 4.3672 -1.04 0 0 0 0.23508 1 176 176 0.26902 0 1 52608 6356 34982 35003 51482 51482 0.1483789805847664 VTKMWKRLWM 10 Unmodified _VTKMWKRLWM_ 0 0 0 REV__ENST00000335753.8_3_10:105762590-105762677:+|nuORF REV__ENST00000335753.8_3_10:105762590-105762677:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.24005126953125 3 460.254394 1377.74135 NaN NaN NaN NaN NaN NaN NaN 54.274 1 54.274 53.774 54.774 0 0 0 0 2.8426 1 10348 10348 0.26539 0 1 + 52609 20659 34983 35004 51483 51483 0.0675922174095831 VTKNTTVS 8 Unmodified _VTKNTTVS_ 0 0 0 REV__ENSG00000129450|ENST00000250360|SIGLEC9 REV__ENSG00000129450|ENST00000250360|SIGLEC9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.23602294921875 2 425.23745 848.460347 NaN NaN NaN NaN NaN NaN NaN 51.218 1 51.218 50.718 51.718 0 0 0 0 0.21486 1 9712 9712 8.5933 3.3626 1 + 52610 15962 34984 35005 51484 51484 0.03005505626458671 VTKRIKSQKR 10 Unmodified _VTKRIKSQKR_ 0 0 0 REV__ENST00000416614.6_1_4:2949288-2950050:-|nuORF REV__ENST00000416614.6_1_4:2949288-2950050:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7520751953125 2 622.401496 1242.78844 0.66685 0.00041505 3.7606 0.0023406 4.4275 0.0027557 622.40270404466 163.19 0.1076 158 157.91 158.02 -5.1878 4 2 2 0 0 0 0.91149 1 31734 31734 1.6526 0 1 6291600 + 52611 21469 34985 35006 51485 51485 0.176755406079792 VTKSSWPP 8 Unmodified _VTKSSWPP_ 0 0 0 REV__GRID2IP|p.L1003Cfs*46|1|0.47|ENSG00000215045|chr7:6503063-6503063|A/-|frameshift_variant REV__GRID2IP|p.L1003Cfs*46|1|0.47|ENSG00000215045|chr7:6503063-6503063|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 301.076171875 3 301.164116 900.470518 NaN NaN NaN NaN NaN NaN NaN 176.55 1 176.55 176.05 177.05 0 0 0 0 0.21486 1 36575 36575 1.6526 0 1 + 52612 23590 34986 35007 51486 51486 0.016301133517117705 VTKTKTLK 8 Unmodified _VTKTKTLK_ 0 0 0 REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2395935058594 2 459.80276 917.590967 NaN NaN NaN NaN NaN NaN NaN 124.66 1 120.01 119.51 120.51 -4.6495 0 0 0 0.2396 1 23986 23986 0.0082765 0 1 + 52613 16180 34987 35008 51487 51487 0.12887521345317055 VTKYKEEAR 9 Unmodified _VTKYKEEAR_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21923828125 3 375.208384 1122.60332 -0.53046 -0.00019903 1.9305 0.00072433 1.4 0.0005253 375.5435437232681 16.086 0.34549 14.864 14.644 14.989 -1.2219 25 9 4 0 0 0 0.81492 1 2251 2251 1.0715 0.29493 1 2608000 52614 7732 34988 35009 51488 51488 0.046925130176987295 VTLALVLTLR 10 Unmodified _VTLALVLTLR_ 0 0 0 REV__ENST00000497331.2_1_1:18688571-18704817:+|nuORF REV__ENST00000497331.2_1_1:18688571-18704817:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.9322814941406 3 366.91302 1097.71723 NaN NaN NaN NaN NaN NaN NaN 11.325 1 10.421 9.9207 10.921 -0.90401 0 0 0 0.22588 1 1493 1493 0 0 1 + 52615 15515 34989 35010 51489 51489 0.1722802785056956 VTLCRWTR 8 Unmodified _VTLCRWTR_ 0 0 0 ROR2|p.S879Pfs*111|1|0.33|ENSG00000169071|chr9:91723860-91723860|G/-|frameshift_variant ROR2|p.S879Pfs*111|1|0.33|ENSG00000169071|chr9:91723860-91723860|G/-|frameshift_variant ROR2|p.S879Pfs*111|1|0.33|ENSG00000169071|chr9:91723860-91723860|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 345.23150634765625 3 345.523649 1033.54912 -0.52587 -0.0001817 -0.74749 -0.00025828 -1.2734 -0.00043997 345.5233769509512 38.988 0.32127 36.583 36.369 36.69 -2.4049 12 8 2 0 0 0 1.0248 1 6931 6931 0.35063 0 1 664470 52616 25619 34990 35011 51490 51490 0.0336864238513499 VTLCRWTR 8 Unmodified _VTLCRWTR_ 0 0 0 ROR2|p.S879Pfs*111|1|0.33|ENSG00000169071|chr9:91723860-91723860|G/-|frameshift_variant ROR2|p.S879Pfs*111|1|0.33|ENSG00000169071|chr9:91723860-91723860|G/-|frameshift_variant ROR2|p.S879Pfs*111|1|0.33|ENSG00000169071|chr9:91723860-91723860|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 345.523649 1033.54912 -0.28874 -9.9767E-05 -1.0188 -0.00035203 -1.3076 -0.0004518 345.52325787415333 36.605 0.28786 36.605 36.455 36.743 0 0.020072 0.00026812 NaN 0.35063 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 444870 52617 25619 34990 35011 0.0336864238513499 VTLCRWTR 8 Unmodified _VTLCRWTR_ 0 0 0 ROR2|p.S879Pfs*111|1|0.33|ENSG00000169071|chr9:91723860-91723860|G/-|frameshift_variant ROR2|p.S879Pfs*111|1|0.33|ENSG00000169071|chr9:91723860-91723860|G/-|frameshift_variant ROR2|p.S879Pfs*111|1|0.33|ENSG00000169071|chr9:91723860-91723860|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 345.523649 1033.54912 0.038176 1.3191E-05 -1.8875 -0.00065216 -1.8493 -0.00063897 345.52300390613823 39.052 0.38496 36.61 36.336 36.721 -2.4419 0.024656 -0.00063227 NaN 0.35063 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1163100 52618 25619 34990 35011 0.0336864238513499 VTLCYCCC 8 Unmodified _VTLCYCCC_ 0 0 0 REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|92|2|anti-sense REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|92|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7611389160156 2 454.16267 906.310788 NaN NaN NaN NaN NaN NaN NaN 164.11 1 159.32 158.82 159.82 -4.7898 0 0 0 0.23366 1 32770 32770 0.0082765 0 1 + 52619 23755 34991 35012 51491 51491 -0.14611545575303353 VTLCYCCC 8 Unmodified _VTLCYCCC_ 0 0 0 REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|92|2|anti-sense REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|92|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7611389160156 2 454.16267 906.310788 NaN NaN NaN NaN NaN NaN NaN 164.13 1 159.34 158.84 159.84 -4.7898 0 0 0 0.21486 1 32774 32774 2.5775 0 1 + 52620 23755 34991 35012 51492 51492 -0.14611545575303353 VTLDALDGL 9 Unmodified _VTLDALDGL_ 0 0 0 REV__ENSG00000090372|ENST00000263280|STRN4 REV__ENSG00000090372|ENST00000263280|STRN4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2386169433594 2 458.752933 915.491313 0.078778 3.6139E-05 -0.64707 -0.00029685 -0.56829 -0.00026071 458.752936033422 58.373 0.62568 55.168 54.743 55.368 -3.2052 25 17 2 0 0 0 0.49001 1 10905 10905 28.487 1.6032 1 616310 + 52621 14545 34992 35013 51493 51493 0.030186589406980602 VTLDAWAGP 9 Unmodified _VTLDAWAGP_ 0 0 0 REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2501525878906 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 46.226 1 43.361 42.861 43.861 -2.8653 0 0 0 0.19684 1 8399 8399 1.2148 1.087 1 + 52622 16418 34993 35014 51494 51494 -0.0016619051091311121 VTLEKLKTVG 10 Unmodified _VTLEKLKTVG_ 0 0 0 nc|ENSG00000170266|P16278-2|GLB1;nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1 nc|ENSG00000170266|P16278-2|GLB1 nc|ENSG00000170266|P16278-2|GLB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.18988037109375 3 363.228897 1086.66486 NaN NaN NaN NaN NaN NaN NaN 17.93 1 16.658 16.158 17.158 -1.2722 0 0 0 2.8426 1 2666 2666 0.063865 0.060484 1 52623 6053 34994 35015 51495 51495 0.12499444716991093 VTLEPCER 8 Unmodified _VTLEPCER_ 0 0 0 nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-3|KIF1B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 316.1600341796875 3 316.160265 945.458967 NaN NaN NaN NaN NaN NaN NaN 37.533 1 35.196 34.696 35.696 -2.3375 0 0 0 0.21486 1 6648 6648 1.6526 0 1 52624 12218;1264 34995 35016 51496 51496 -0.015944517339335107 VTLEQNYI 8 Unmodified _VTLEQNYI_ 0 0 0 DDX10|p.A286V|1|0.09|ENSG00000178105|chr11:108688944-108688944|C/T|missense_variant DDX10|p.A286V|1|0.09|ENSG00000178105|chr11:108688944-108688944|C/T|missense_variant DDX10|p.A286V|1|0.09|ENSG00000178105|chr11:108688944-108688944|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2576904296875 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 146.05 1 141.36 140.86 141.86 -4.6868 0 0 0 0.22676 1 28961 28961 1.7423 0 1 52625 798 34996 35017 51497 51497 0.012100613149868877 VTLEQTCY 8 Unmodified _VTLEQTCY_ 0 0 0 REV__POLE2|p.I412L|1|0.14|ENSG00000100479|chr14:49651355-49651355|T/G|missense_variant REV__POLE2|p.I412L|1|0.14|ENSG00000100479|chr14:49651355-49651355|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7238464355469 2 478.723318 955.432083 -0.034879 -1.6697E-05 0.12542 6.0041E-05 0.09054 4.3343E-05 478.7233264358322 44.356 0.97188 41.566 40.947 41.919 -2.79 66 27 3 0 0 0 0.58432 1 8238 8238 23.148 0 1 12101000 + 52626 24493 34997 35018 51498 51498 -0.04741560345121343 VTLEQTCY 8 Unmodified _VTLEQTCY_ 0 0 0 REV__POLE2|p.I412L|1|0.14|ENSG00000100479|chr14:49651355-49651355|T/G|missense_variant REV__POLE2|p.I412L|1|0.14|ENSG00000100479|chr14:49651355-49651355|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7239990234375 2 478.723318 955.432083 -0.037037 -1.773E-05 0.26697 0.00012781 0.22994 0.00011008 478.72338923633345 44.323 0.9645 41.557 40.94 41.905 -2.7661 66 27 3 0 0 0 0.68128 1 7918 7918 16.942 0 1 8341400 + 52627 24493 34997 35018 51499 51499 -0.04741560345121343 VTLEVLVAP 9 Unmodified _VTLEVLVAP_ 0 0 0 nc|ENSG00000154721|P57087-2|JAM2;ENSG00000154721|ENST00000480456|JAM2;nc|ENSG00000154721|P57087-3|JAM2 nc|ENSG00000154721|P57087-2|JAM2 nc|ENSG00000154721|P57087-2|JAM2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 314.2117004394531 3 314.195304 939.564084 NaN NaN NaN NaN NaN NaN NaN 129.86 1 125.02 124.52 125.52 -4.8355 0 0 0 0.23508 1 24931 24931 2.7352 0 1 52628 5021 34998 35019 51500 51500 0.09188412734147278 VTLGATRIWY 10 Unmodified _VTLGATRIWY_ 0 0 0 REV__ARHGEF17|p.G290Efs*24|1|0.14|ENSG00000110237|chr11:73309504-73309504|G/-|frameshift_variant REV__ARHGEF17|p.G290Efs*24|1|0.14|ENSG00000110237|chr11:73309504-73309504|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2496948242188 2 590.329673 1178.64479 NaN NaN NaN NaN NaN NaN NaN 137.12 1 132.28 131.78 132.78 -4.84 0 0 0 0.22588 1 26414 26414 6.7232 0.51738 1 + 52629 13112 34999 35020 51501 51501 0.0626169377703718 VTLGKVLKV 9 Unmodified _VTLGKVLKV_ 0 0 0 MED27|p.V202I|1|0.07|ENSG00000160563|chr9:131893962-131893962|C/T|missense_variant;ENST00000514280.1_1_5:79646842-79647379:-|nuORF;ENSG00000160563|ENST00000292035|MED27 MED27|p.V202I|1|0.07|ENSG00000160563|chr9:131893962-131893962|C/T|missense_variant MED27|p.V202I|1|0.07|ENSG00000160563|chr9:131893962-131893962|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.730224609375 2 478.828778 955.643003 NaN NaN NaN NaN NaN NaN NaN 140.84 1 136.19 135.69 136.69 -4.6493 0 0 0 0.23508 1 27810 27810 2.0598 0 1 52630 5254 35000 35021 51502 51502 0.16340684759086344 VTLGSIEKI 9 Unmodified _VTLGSIEKI_ 0 0 0 REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1 REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7709045410156 2 480.292225 958.569897 -0.026078 -1.2525E-05 0.17757 8.5284E-05 0.15149 7.2758E-05 480.2922482041259 135.01 1.1477 135.01 134.49 135.64 0 102 32 4 0 0 0 0.057505 1 26669 26669 68.081 13.307 1 153880000 + 52631 24919 35001 35022 51503 51503 0.08895511245816579 VTLGSIEKI 9 Unmodified _VTLGSIEKI_ 0 0 0 REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1 REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.765380859375 2 480.292225 958.569897 0.062966 3.0242E-05 0.082254 3.9506E-05 0.14522 6.9748E-05 480.2922808858366 133.6 0.72739 128.73 128.37 129.09 -4.8726 46 20 3 0 0 0 0.60061 1 25642 25642 13.042 1.4022 1 3746000 + 52632 24919 35001 35022 51504 51504 0.08895511245816579 VTLGSIEKI 9 Unmodified _VTLGSIEKI_ 0 0 0 REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1 REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24078369140625 2 480.292225 958.569897 0.09427 4.5277E-05 -0.016413 -7.8831E-06 0.077856 3.7394E-05 480.29215779299295 139.62 1.1845 134.67 134.17 135.36 -4.952 120 33 5 0 0 0 0.050422 2 26829 26781;26829 49.933 11.177 1 163180000 + 52633 24919 35001 35022 51505;51506 51506 0.08895511245816579 VTLGSIEKI 9 Unmodified _VTLGSIEKI_ 0 0 0 REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1 REV__tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7873229980469 2 480.292225 958.569897 0.21352 0.00010255 -0.15568 -7.4774E-05 0.057836 2.7778E-05 480.2921025244615 139.56 1.5403 134.71 134.18 135.72 -4.8492 135 43 5 0 0 0 0.034704 1 26930 26930 78.149 7.0158 1 156150000 + 52634 24919 35001 35022 51507 51507 0.08895511245816579 VTLGSYIGLY 10 Unmodified _VTLGSYIGLY_ 0 0 0 REV__ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant REV__ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7872924804688 2 543.297507 1084.58046 0.34241 0.00018603 -0.43917 -0.0002386 -0.096764 -5.2571E-05 543.2972801656337 155.64 0.51736 155.64 155.38 155.9 0 22 14 2 0 0 0 0.90272 1 31152 31152 13.042 5.1323 1 4005500 + 52635 12902 35002 35023 51508 51508 0.04155493900225338 VTLIQKLAA 9 Unmodified _VTLIQKLAA_ 0 0 0 CASD1|p.A543Sfs*33|1|0.32|ENSG00000127995|chr7:94545686-94545687|-/A|frameshift_variant;ENSG00000127995|ENST00000297273|CASD1 CASD1|p.A543Sfs*33|1|0.32|ENSG00000127995|chr7:94545686-94545687|-/A|frameshift_variant CASD1|p.A543Sfs*33|1|0.32|ENSG00000127995|chr7:94545686-94545687|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7415771484375 2 478.810585 955.606617 0.08949 4.2849E-05 -0.17837 -8.5405E-05 -0.088879 -4.2556E-05 478.81047883089036 61.034 0.42096 57.665 57.408 57.829 -3.3694 17 11 2 0 0 0 0.84208 1 11332 11332 7.2892 7.2892 1 894790 52636 394 35003 35024 51509 51509 0.12703807862362737 VTLKARMT 8 Unmodified _VTLKARMT_ 0 0 0 nc|ENSG00000106025|O95859-2|TSPAN12;ENSG00000106025|ENST00000222747|TSPAN12 nc|ENSG00000106025|O95859-2|TSPAN12 nc|ENSG00000106025|O95859-2|TSPAN12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2293701171875 2 460.273312 918.532072 NaN NaN NaN NaN NaN NaN NaN 86.324 1 86.324 85.824 86.824 0 0 0 0 0.21486 1 16849 16849 11.64 0.81637 1 52637 2359 35004 35025 51510 51510 0.06954721779345618 VTLKARMT 8 Unmodified _VTLKARMT_ 0 0 0 nc|ENSG00000106025|O95859-2|TSPAN12;ENSG00000106025|ENST00000222747|TSPAN12 nc|ENSG00000106025|O95859-2|TSPAN12 nc|ENSG00000106025|O95859-2|TSPAN12 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.233154296875 2 460.273312 918.532072 NaN NaN NaN NaN NaN NaN NaN 90.079 1 90.079 89.579 90.579 0 0 0 0 0.21486 1 17597 17597 12.532 3.9383 1 52638 2359 35004 35025 51511 51511 0.06954721779345618 VTLLLRAPP 9 Unmodified _VTLLLRAPP_ 0 0 0 SMTN|p.L317Pfs*24|1|0.4|ENSG00000183963|chr22:31090966-31090967|-/C|frameshift_variant;SMTN|p.S239Afs*118|6|0.25|ENSG00000183963|chr22:31089936-31089936|C/-|frameshift_variant;SMTN|p.A318Pfs*39|1|0.29|ENSG00000183963|chr22:31090967-31090967|C/-|frameshift_variant;SMTN|p.G455Afs*3|1|0.38|ENSG00000183963|chr22:31091383-31091383|G/-|frameshift_variant;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN SMTN|p.L317Pfs*24|1|0.4|ENSG00000183963|chr22:31090966-31090967|-/C|frameshift_variant SMTN|p.L317Pfs*24|1|0.4|ENSG00000183963|chr22:31090966-31090967|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2710876464844 2 490.318577 978.622602 NaN NaN NaN NaN NaN NaN NaN 145.8 1 141.11 140.61 141.61 -4.6868 0 0 0 0.19656 1 28905 28905 0.073264 0 1 52639 6883 35005 35026 51512 51512 0.1324351409926976 VTLLLRAPP 9 Unmodified _VTLLLRAPP_ 0 0 0 SMTN|p.L317Pfs*24|1|0.4|ENSG00000183963|chr22:31090966-31090967|-/C|frameshift_variant;SMTN|p.S239Afs*118|6|0.25|ENSG00000183963|chr22:31089936-31089936|C/-|frameshift_variant;SMTN|p.A318Pfs*39|1|0.29|ENSG00000183963|chr22:31090967-31090967|C/-|frameshift_variant;SMTN|p.G455Afs*3|1|0.38|ENSG00000183963|chr22:31091383-31091383|G/-|frameshift_variant;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN SMTN|p.L317Pfs*24|1|0.4|ENSG00000183963|chr22:31090966-31090967|-/C|frameshift_variant SMTN|p.L317Pfs*24|1|0.4|ENSG00000183963|chr22:31090966-31090967|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26904296875 2 490.318577 978.622602 NaN NaN NaN NaN NaN NaN NaN 143.15 1 138.13 137.63 138.63 -5.0261 0 0 0 0.19634 1 27597 27597 0.073264 0 1 52640 6883 35005 35026 51513 51513 0.1324351409926976 VTLLPLVV 8 Unmodified _VTLLPLVV_ 0 0 0 ENST00000556751.5_2_14:101014389-101014500:-|nuORF ENST00000556751.5_2_14:101014389-101014500:-|nuORF ENST00000556751.5_2_14:101014389-101014500:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.28155517578125 2 427.291497 852.568441 NaN NaN NaN NaN NaN NaN NaN 5.0355 1 4.4093 3.9093 4.9093 -0.62626 0 0 0 0.21486 1 203 203 0.69038 0 1 52641 11246 35006 35027 51514 51514 0.13625921947721054 VTLLPLVV 8 Unmodified _VTLLPLVV_ 0 0 0 ENST00000556751.5_2_14:101014389-101014500:-|nuORF ENST00000556751.5_2_14:101014389-101014500:-|nuORF ENST00000556751.5_2_14:101014389-101014500:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 427.2932434082031 2 427.291497 852.568441 NaN NaN NaN NaN NaN NaN NaN 13.887 1 12.773 12.273 13.273 -1.1142 0 0 0 0.21486 1 2044 2044 0.69038 0 1 52642 11246 35006 35027 51515 51515 0.13625921947721054 VTLLSSQQS 9 Unmodified _VTLLSSQQS_ 0 0 0 REV__RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant REV__RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7701416015625 2 481.761289 961.508025 -0.31079 -0.00014973 2.2936 0.001105 1.9828 0.00095524 481.7611708993002 64.075 0.5918 64.075 63.749 64.341 0 25 16 2 0 0 0 0.31714 1 12303 12303 30.637 5.2372 1 1488700 + 52643 18503 35007 35028 51516 51516 0.02573159826670235 VTLLVLIVVL 10 Unmodified _VTLLVLIVVL_ 0 0 0 REV__ENSG00000187266|ENST00000222139|EPOR REV__ENSG00000187266|ENST00000222139|EPOR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2703857421875 2 541.383386 1080.75222 0.34096 0.00018459 0.78406 0.00042448 1.125 0.00060907 541.384742319194 153.27 0.10797 148.5 148.44 148.55 -4.7684 4 2 2 0 0 0 0.91149 1 30453 30453 0.40072 0 1 727030 + 52644 19084 35008 35029 51517 51517 0.21507270658571542 VTLNFSFT 8 Unmodified _VTLNFSFT_ 0 0 0 ENST00000605834.1_1_4:185397754-185397856:+|nuORF ENST00000605834.1_1_4:185397754-185397856:+|nuORF ENST00000605834.1_1_4:185397754-185397856:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 92.135 1 88.04 87.54 88.54 -4.0946 0 0 0 0.23899 1 17552 17552 1.3295 0 1 52645 11737 35009 35030 51518 51518 0.003546936318684857 VTLNNSAPK 9 Unmodified _VTLNNSAPK_ 0 0 0 REV__nc|ENSG00000118946|O14917-2|PCDH17 REV__nc|ENSG00000118946|O14917-2|PCDH17 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.2070617675781 3 315.178425 942.513445 NaN NaN NaN NaN NaN NaN NaN 78.411 1 74.645 74.145 75.145 -3.7664 0 0 0 0.23508 1 14870 14870 0.96228 0.33545 1 + 52646 15566 35010 35031 51519 51519 0.03988883409135724 VTLPKKPY 8 Unmodified _VTLPKKPY_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 473.29083251953125 2 473.292028 944.569503 NaN NaN NaN NaN NaN NaN NaN 142.36 1 137.46 136.96 137.96 -4.8982 0 0 0 0.21486 1 27468 27468 5.7604 0 1 52647 5126;11929 35011 35032 51520 51520 0.09500136316603403 VTLQVLSLLPP 11 Unmodified _VTLQVLSLLPP_ 0 0 0 ENST00000471659.1_1_22:31011695-31013483:+|nuORF;ENST00000493542.1_1_22:31011707-31019156:+|nuORF;nc|ENSG00000185339|P20062-2|TCN2;ENSG00000185339|ENST00000215838|TCN2 ENST00000471659.1_1_22:31011695-31013483:+|nuORF ENST00000471659.1_1_22:31011695-31013483:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2679443359375 2 590.371007 1178.72746 NaN NaN NaN NaN NaN NaN NaN 104.06 1 99.71 99.21 100.21 -4.346 0 0 0 0.22632 1 19935 19935 0.026206 0 1 52648 6982 35012 35033 51521 51521 0.14524590785185865 VTLRKKQA 8 Unmodified _VTLRKKQA_ 0 0 0 REV__nc|ENSG00000055332|P19525-2|EIF2AK2 REV__nc|ENSG00000055332|P19525-2|EIF2AK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.2066650390625 3 315.206426 942.597449 NaN NaN NaN NaN NaN NaN NaN 72.844 1 69.534 69.034 70.034 -3.3107 0 0 0 0.21486 1 14198 14198 3.9444 0 1 + 52649 14115 35013 35034 51522 51522 0.12385459296706358 VTLRKKQA 8 Unmodified _VTLRKKQA_ 0 0 0 REV__nc|ENSG00000055332|P19525-2|EIF2AK2 REV__nc|ENSG00000055332|P19525-2|EIF2AK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1951904296875 3 315.206426 942.597449 NaN NaN NaN NaN NaN NaN NaN 33.964 1 31.748 31.248 32.248 -2.2158 0 0 0 0.21486 1 5936 5936 1.6526 0 1 + 52650 14115 35013 35034 51523 51523 0.12385459296706358 VTLRRLVS 8 Unmodified _VTLRRLVS_ 0 0 0 REV__ENSG00000135451|ENST00000257909|TROAP REV__ENSG00000135451|ENST00000257909|TROAP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1794738769531 3 315.206426 942.597449 NaN NaN NaN NaN NaN NaN NaN 78.723 1 75.26 74.76 75.76 -3.4633 0 0 0 0.21486 1 15372 15372 0.45834 0 1 + 52651 16271 35014 35035 51524 51524 0.12385459296717727 VTLRRLVS 8 Unmodified _VTLRRLVS_ 0 0 0 REV__ENSG00000135451|ENST00000257909|TROAP REV__ENSG00000135451|ENST00000257909|TROAP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.20623779296875 3 315.206426 942.597449 NaN NaN NaN NaN NaN NaN NaN 74.926 1 71.219 70.719 71.719 -3.7074 0 0 0 0.21486 1 14168 14168 0.45834 0 1 + 52652 16271 35014 35035 51525 51525 0.12385459296717727 VTLRRMAP 8 Unmodified _VTLRRMAP_ 0 0 0 REV__AURKC|p.A266Pfs*4|1|0.3|ENSG00000105146|chr19:57235279-57235279|G/-|frameshift_variant REV__AURKC|p.A266Pfs*4|1|0.3|ENSG00000105146|chr19:57235279-57235279|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1754455566406 3 315.188378 942.543305 NaN NaN NaN NaN NaN NaN NaN 21.619 1 19.898 19.398 20.398 -1.7211 0 0 0 0.21486 1 3390 3390 1.8442 0 1 + 52653 13161 35015 35036 51526 51526 0.06973543873482413 VTLSLPPQR 9 Unmodified _VTLSLPPQR_ 0 0 0 ENST00000461864.5_1_3:136580731-136580812:-|nuORF ENST00000461864.5_1_3:136580731-136580812:-|nuORF ENST00000461864.5_1_3:136580731-136580812:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 338.20654296875 3 337.537953 1009.59203 -0.77297 -0.00026091 0.80058 0.00027023 0.02761 9.3195E-06 337.53816023084414 48.025 0.44999 45.075 44.776 45.226 -2.9499 26 12 3 0 0 0 0.45972 1 8781 8781 0.073264 0 1 1179000 52654 10077 35016 35037 51527 51527 0.0876173571423351 VTLSLSPVK 9 Unmodified _VTLSLSPVK_ 0 0 0 REV__ENST00000268058.7_1_15:74337649-74338387:+|nuORF REV__ENST00000268058.7_1_15:74337649-74338387:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.15887451171875 3 315.198937 942.574983 -0.30173 -9.5106E-05 0.31501 9.9291E-05 0.013278 4.1851E-06 315.1989996331271 84.055 0.858 80.447 80.115 80.973 -3.6079 56 24 3 0 0 0 0.81734 1 16375 16375 0.96228 0 1 4989400 + 52655 20261 35017 35038 51528 51528 0.10139815108436778 VTLSWEPP 8 Unmodified _VTLSWEPP_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 104.97 1 104.97 104.47 105.47 0 0 0 0 0.21486 1 20633 20633 1.6526 0 1 52656 5053 35018 35039 51529 51529 0.00354693631857117 VTLSWEPP 8 Unmodified _VTLSWEPP_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 85.868 1 82.139 81.639 82.639 -3.7289 0 0 0 0.21486 1 16411 16411 1.6526 0 1 52657 5053 35018 35039 51530 51530 0.00354693631857117 VTLSWEPP 8 Unmodified _VTLSWEPP_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 107.78 1 103.65 103.15 104.15 -4.135 0 0 0 0.23584 1 20735 20735 0.12286 0 1 52658 5053 35018 35039 51531 51531 0.00354693631857117 VTLTSTLLHLY 11 Unmodified _VTLTSTLLHLY_ 0 0 0 REV__ENST00000369209.7_3_10:118434152-118434278:-|nuORF REV__ENST00000369209.7_3_10:118434152-118434278:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7708129882812 2 630.863546 1259.71254 NaN NaN NaN NaN NaN NaN NaN 126.67 1 121.97 121.47 122.47 -4.6998 0 0 0 0.22632 1 24366 24366 0.172 0.10814 1 + 52659 20956 35019 35040 51532 51532 0.09307098917201984 VTLTWDPP 8 Unmodified _VTLTWDPP_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 111.32 1 107.09 106.59 107.59 -4.2289 0 0 0 0.21486 1 21426 21426 1.6526 0 1 52660 5053 35020 35041 51533 51533 0.003546936318457483 VTLVEKLK 8 Unmodified _VTLVEKLK_ 0 0 0 RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant;ENSG00000174373|ENST00000680220|RALGAPA1 RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1719970703125 3 310.539182 928.595718 -0.32531 -0.00010102 0.42549 0.00013213 0.10018 3.1109E-05 310.53925832475636 72.109 0.4182 68.57 68.295 68.713 -3.5385 16 11 2 0 0 0 1.0242 1 13678 13678 8.1555 0 1 551540 52661 6346 35021 35042 51534 51534 0.128564054880826 VTLVVPIV 8 Unmodified _VTLVVPIV_ 0 0 0 REV__ENSG00000122679|ENST00000242249|RAMP3 REV__ENSG00000122679|ENST00000242249|RAMP3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4913940429688 1 839.560067 838.552791 0.42753 0.00035894 4.4028 0.0036965 4.8304 0.0040554 839.566867542719 168.77 0.2075 163.84 163.72 163.93 -4.9295 6 5 2 0 0 0 0.88282 1 33282 33282 0.69038 0 1 17769000 + 52662 15699 35022 35043 51535 51535 0.12705635430666007 VTLWGWPG 8 Unmodified _VTLWGWPG_ 0 0 0 REV__ENST00000447767.1_1_20:57099850-57100060:+|nuORF REV__ENST00000447767.1_1_20:57099850-57100060:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23828125 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 83.363 1 83.363 82.863 83.863 0 0 0 0 0.21486 1 16254 16254 9.3474 0 1 + 52663 21774 35023 35044 51536 51536 0.004384345599078188 VTLWILLA 8 Unmodified _VTLWILLA_ 0 0 0 SLC9A4|p.F354Sfs*2|1|0.05|ENSG00000180251|chr2:102505332-102505332|C/-|frameshift_variant;SLC9A4|p.T483Pfs*15|1|0.33|ENSG00000180251|chr2:102508886-102508886|A/-|frameshift_variant;ENSG00000180251|ENST00000295269|SLC9A4 SLC9A4|p.F354Sfs*2|1|0.05|ENSG00000180251|chr2:102505332-102505332|C/-|frameshift_variant SLC9A4|p.F354Sfs*2|1|0.05|ENSG00000180251|chr2:102505332-102505332|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 50.24 1 50.24 49.74 50.74 0 0 0 0 0.21486 1 9511 9511 3.5965 0 1 52664 6663 35024 35045 51537 51537 0.1126532432199383 VTMCVEGQQ 9 Unmodified _VTMCVEGQQ_ 0 0 0 REV__ENSG00000154493|ENST00000488181|C10orf90 REV__ENSG00000154493|ENST00000488181|C10orf90 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.0053405761719 3 332.14926 993.425952 NaN NaN NaN NaN NaN NaN NaN 95.602 1 91.721 91.221 92.221 -3.881 0 0 0 0.23508 1 18344 18344 1.0715 0 1 + 52665 17184 35025 35046 51538 51538 -0.0710240184828308 VTMGEKYVQP 10 Unmodified _VTMGEKYVQP_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;ENST00000492261.5_1_12:124409716-124414381:+|nuORF nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3240966796875 2 576.291899 1150.56925 NaN NaN NaN NaN NaN NaN NaN 121.56 1 117.03 116.53 117.53 -4.5305 0 0 0 0.22583 1 23405 23405 13.906 4.5229 1 52666 7388 35026 35047 51539 51539 -1.651465572649613E-05 VTMGIIRDERA 11 Unmodified _VTMGIIRDERA_ 0 0 0 REV__ENSG00000137766|ENST00000260323|UNC13C REV__ENSG00000137766|ENST00000260323|UNC13C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7532958984375 2 630.840079 1259.66561 NaN NaN NaN NaN NaN NaN NaN 122.12 1 117.43 116.93 117.93 -4.6873 0 0 0 0.22943 1 23446 23446 8.7454 1.1365 1 + 52667 16407 35027 35048 51540 51540 0.046159160943716415 VTMGNSSPH 9 Unmodified _VTMGNSSPH_ 0 0 0 ENST00000542575.6_2_19:47278374-47278659:-|nuORF ENST00000542575.6_2_19:47278374-47278659:-|nuORF ENST00000542575.6_2_19:47278374-47278659:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24005126953125 2 465.210909 928.407265 NaN NaN NaN NaN NaN NaN NaN 86.221 1 82.271 81.771 82.771 -3.9503 0 0 0 0.23508 1 16410 16410 12.532 2.3482 1 52668 11091 35028 35049 51541 51541 -0.059801954278327685 VTMKAVKP 8 Unmodified _VTMKAVKP_ 0 0 0 REV__ENSG00000112339|ENST00000367837|HBS1L REV__ENSG00000112339|ENST00000367837|HBS1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22991943359375 2 437.264956 872.515359 NaN NaN NaN NaN NaN NaN NaN 128.25 1 128.25 127.75 128.75 0 0 0 0 0.23107 1 25326 25326 0.25148 0.18749 1 + 52669 15295 35029 35050 51542 51542 0.07400220893396181 VTMKLGCVLM 10 Unmodified _VTMKLGCVLM_ 0 0 0 nc|ENSG00000132185|Q7L513-12|FCRLA;nc|ENSG00000132185|Q7L513-15|FCRLA;nc|ENSG00000132185|Q7L513-13|FCRLA;nc|ENSG00000132185|Q7L513-14|FCRLA;nc|ENSG00000132185|Q7L513-11|FCRLA;nc|ENSG00000132185|Q7L513-9|FCRLA;nc|ENSG00000132185|Q7L513-10|FCRLA nc|ENSG00000132185|Q7L513-12|FCRLA nc|ENSG00000132185|Q7L513-12|FCRLA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7928466796875 2 547.792166 1093.56978 NaN NaN NaN NaN NaN NaN NaN 57.886 1 54.681 54.181 55.181 -3.2052 0 0 0 0.22588 1 10792 10792 8.1555 0.24537 1 52670 12325 35030 35051 51543 51543 0.026737286582829256 VTMKPLPFY 9 Unmodified _VTMKPLPFY_ 0 0 0 ENST00000484423.5_1_1:145576054-145578613:+|nuORF;PIAS3|p.L222Cfs*56|1|0.24|ENSG00000131788|chr1:145855741-145855741|G/-|frameshift_variant;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3 ENST00000484423.5_1_1:145576054-145578613:+|nuORF ENST00000484423.5_1_1:145576054-145578613:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7922973632812 2 548.298996 1094.58344 0.33644 0.00018447 3.2062 0.0017579 3.5426 0.0019424 548.3003164496635 160.41 0.17921 160.41 160.35 160.53 0 5 4 2 0 0 0 0.8319 1 32201 32201 7.9102 5.6074 1 2734200 52671 3694 35031 35052 51544 51544 0.03993045753395563 VTMLRQYH 8 Unmodified _VTMLRQYH_ 0 0 0 REV__DENND5A|p.K895Sfs*7|2|0.23|ENSG00000184014|chr11:9150132-9150132|T/-|frameshift_variant REV__DENND5A|p.K895Sfs*7|2|0.23|ENSG00000184014|chr11:9150132-9150132|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6875 2 524.273844 1046.53313 -0.51096 -0.00026788 1.3924 0.00073 0.88144 0.00046212 524.7761938052462 22.53 0.86652 20.741 20.053 20.92 -1.7886 36 24 3 0 0 0 0.89276 1 3481 3481 0.62683 0 1 565570 + 52672 13664 35032 35053 51545 51545 0.011729361482366585 VTMMVQHQI 9 Unmodified _VTMMVQHQI_ 0 0 0 REV__ENST00000548599.5_1_12:70731222-70732229:+|nuORF REV__ENST00000548599.5_1_12:70731222-70732229:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7764282226562 2 543.775362 1085.53617 NaN NaN NaN NaN NaN NaN NaN 62.647 1 59.686 59.186 60.186 -2.9614 0 0 0 0.22251 1 12090 12090 16.942 1.0951 1 + 52673 22911 35033 35054 51546 51546 -0.0031755678924128006 VTMMVQHQI 9 Unmodified _VTMMVQHQI_ 0 0 0 REV__ENST00000548599.5_1_12:70731222-70732229:+|nuORF REV__ENST00000548599.5_1_12:70731222-70732229:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7785034179688 2 543.775362 1085.53617 0.37632 0.00020463 -2.6826 -0.0014587 -2.3062 -0.0012541 543.7728914243089 143.34 0.10449 138.44 138.37 138.47 -4.8982 4 2 2 0 0 0 0.34815 1 27667 27667 0.40827 0 1 381580 + 52674 22911 35033 35054 51547 51547 -0.0031755678924128006 VTMPISALDP 10 Unmodified _VTMPISALDP_ 0 0 0 nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3 nc|ENSG00000105639|P52333-2|JAK3 nc|ENSG00000105639|P52333-2|JAK3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.276611328125 2 522.275718 1042.53688 NaN NaN NaN NaN NaN NaN NaN 158.23 1 158.23 157.73 158.73 0 0 0 0 0.22588 1 31766 31766 10.074 2.1638 1 52675 2324 35034 35055 51548 51548 0.017315611314188573 VTMRVEPP 8 Unmodified _VTMRVEPP_ 0 0 0 REV__nc|ENSG00000132466|O75179-4|ANKRD17 REV__nc|ENSG00000132466|O75179-4|ANKRD17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17010498046875 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 68.503 1 68.503 68.003 69.003 0 0 0 0 0.21486 1 13247 13247 1.6526 0 1 + 52676 13055 35035 35056 51549 51549 0.018144425083505666 VTMRVEPP 8 Unmodified _VTMRVEPP_ 0 0 0 REV__nc|ENSG00000132466|O75179-4|ANKRD17 REV__nc|ENSG00000132466|O75179-4|ANKRD17 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16973876953125 3 310.168872 927.484787 NaN NaN NaN NaN NaN NaN NaN 82.147 1 82.147 81.647 82.647 0 0 0 0 0.21486 1 16004 16004 1.6526 0 1 + 52677 13055 35035 35056 51550 51550 0.018144425083505666 VTMSVHDEE 9 Unmodified _VTMSVHDEE_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;DOCK5|p.S612Kfs*4|1|0.33|ENSG00000147459|chr8:25325472-25325473|-/C|frameshift_variant;ENST00000487948.1_1_8:25167987-25174722:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.679443359375 2 523.726589 1045.43863 0.18289 9.5785E-05 4.3335 0.0022696 4.5164 0.0023654 524.2315266558197 135.65 0.17319 135.65 135.5 135.67 0 6 4 2 0 0 0 0.69259 1 26870 26870 6.7232 0.51738 1 3279000 52678 4703 35036 35057 51551 51551 -0.08227667184405618 VTNFVVLSY 9 Unmodified _VTNFVVLSY_ 0 0 0 REV__ENST00000593636.1_1_19:50321571-50322554:+|nuORF REV__ENST00000593636.1_1_19:50321571-50322554:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 521.117919921875 2 521.2844 1040.55425 -0.44205 -0.00023043 3.3771 0.0017604 2.935 0.00153 521.2870641249266 53.037 0.38577 50.154 49.999 50.385 -2.8837 16 10 2 0 0 0 0.87258 1 10094 10094 4.3292 0 1 670820 + 52679 14958 35037 35058 51552 51552 0.0355922472876955 VTNGGISII 9 Unmodified _VTNGGISII_ 0 0 0 ENSG00000149256|ENST00000278550|TENM4;TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21661376953125 2 437.255643 872.496732 -0.10471 -4.5786E-05 -0.21586 -9.4387E-05 -0.32057 -0.00014017 437.2555203798476 79.134 0.59393 75.624 75.206 75.8 -3.5102 27 16 2 0 0 0 0.27865 1 15469 15469 41.84 0 1 1737200 52680 4777 35038 35059 51553 51553 0.05538382523195651 VTNILQKHK 9 Unmodified _VTNILQKHK_ 0 0 0 nc|ENSG00000092200|Q96KN7-6|RPGRIP1;nc|ENSG00000092200|Q96KN7-4|RPGRIP1;RPGRIP1|p.I758Hfs*10|1|0.36|ENSG00000092200|chr14:21325283-21325284|-/C|frameshift_variant;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;RPGRIP1|p.N899Mfs*38|1|0.52|ENSG00000092200|chr14:21326154-21326154|A/-|frameshift_variant;ENSG00000092200|ENST00000400017|RPGRIP1 nc|ENSG00000092200|Q96KN7-6|RPGRIP1 nc|ENSG00000092200|Q96KN7-6|RPGRIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2616577148438 2 540.82984 1079.64513 0.29768 0.000161 1.6667 0.00090139 1.9644 0.0010624 541.3338814966087 143.81 0.20802 143.81 143.65 143.86 0 9 5 2 0 0 0 0.74858 1 28677 28677 17.113 2.2746 1 1339000 52681 1829 35039 35060 51554 51554 0.10849113496897189 VTNKTKKT 8 Unmodified _VTNKTKKT_ 0 0 0 nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L;AKAP8L|p.L446I|1|0.39|ENSG00000011243|chr19:15397589-15397589|G/T|missense_variant;ENST00000600065.5_1_19:15492734-15508647:-|nuORF nc|ENSG00000011243|Q9ULX6-2|AKAP8L nc|ENSG00000011243|Q9ULX6-2|AKAP8L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 307.1898498535156 3 307.190553 918.549831 NaN NaN NaN NaN NaN NaN NaN 83.168 1 79.56 79.06 80.06 -3.6079 0 0 0 0.21486 1 16257 16257 0 0 1 52682 1072 35040 35061 51555 51555 0.08729760305834589 VTNLDEHIF 9 Unmodified _VTNLDEHIF_ 0 0 0 REV__nc|ENSG00000182545|Q5GAN6-2|RNASE10 REV__nc|ENSG00000182545|Q5GAN6-2|RNASE10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7725830078125 2 544.274564 1086.53457 0.20706 0.0001127 0.27672 0.00015061 0.48378 0.00026331 544.2748656090779 102.27 1.3621 98.089 97.479 98.841 -4.1861 36 23 2 0 0 0 0.40602 1 20211 20211 25.399 4.9457 1 5056900 + 52683 18785 35041 35062 51556 51556 -0.005231512820046191 VTNNTFRHY 9 Unmodified _VTNNTFRHY_ 0 0 0 GRK4|p.K184N|1|0.35|ENSG00000125388|chr4:3009663-3009663|G/T|missense_variant GRK4|p.K184N|1|0.35|ENSG00000125388|chr4:3009663-3009663|G/T|missense_variant GRK4|p.K184N|1|0.35|ENSG00000125388|chr4:3009663-3009663|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3313598632812 2 576.283254 1150.55196 0.32281 0.00018603 -0.90696 -0.00052266 -0.58414 -0.00033663 576.7822787549973 145.87 0.10625 140.87 140.81 140.91 -5 4 2 2 0 0 0 0.84208 1 28212 28212 1.6526 0 1 1007000 52684 11865 35042 35063 51557 51557 -0.01729810956339861 VTNPEIHQ 8 Unmodified _VTNPEIHQ_ 0 0 0 ENST00000366956.9_1_1:214530787-214530958:-|nuORF ENST00000366956.9_1_1:214530787-214530958:-|nuORF ENST00000366956.9_1_1:214530787-214530958:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1623840332031 3 313.162775 936.466495 NaN NaN NaN NaN NaN NaN NaN 32.579 1 30.431 29.931 30.931 -2.1483 0 0 0 0.21486 1 5649 5649 1.6526 0 1 52685 9053 35043 35064 51558 51558 -0.004279761419979877 VTNPHGSLKKM 11 Unmodified _VTNPHGSLKKM_ 0 0 0 REV__GAK|p.I98T|1|0.07|ENSG00000178950|chr4:911762-911762|A/G|missense_variant REV__GAK|p.I98T|1|0.07|ENSG00000178950|chr4:911762-911762|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 606.0736083984375 2 606.33189 1210.64923 NaN NaN NaN NaN NaN NaN NaN 89.578 1 89.578 89.078 90.078 0 0 0 0 0.23379 1 17495 17495 5.2969 0.39987 1 + 52686 23560 35044 35065 51559 51559 0.052328349283015996 VTNTCTAYA 9 Unmodified _VTNTCTAYA_ 0 0 0 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.0400695800781 3 315.144504 942.411682 NaN NaN NaN NaN NaN NaN NaN 78.119 1 78.119 77.619 78.619 0 0 0 0 0.23508 1 15200 15200 1.0715 0 1 + 52687 18433 35045 35066 51560 51560 -0.06182731004935249 VTNTCTAYA 9 Unmodified _VTNTCTAYA_ 0 0 0 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1434326171875 3 315.144504 942.411682 NaN NaN NaN NaN NaN NaN NaN 81.841 1 78.284 77.784 78.784 -3.557 0 0 0 0.23508 1 15990 15990 1.1933 0 1 + 52688 18433 35045 35066 51561 51561 -0.06182731004935249 VTNTCTAYA 9 Unmodified _VTNTCTAYA_ 0 0 0 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.1435852050781 3 315.144504 942.411682 NaN NaN NaN NaN NaN NaN NaN 110.32 1 105.94 105.44 106.44 -4.3776 0 0 0 0.23508 1 21744 21744 1.0715 0 1 + 52689 18433 35045 35066 51562 51562 -0.06182731004935249 VTNTCTAYA 9 Unmodified _VTNTCTAYA_ 0 0 0 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 315.18023681640625 3 315.144504 942.411682 NaN NaN NaN NaN NaN NaN NaN 110.38 1 106 105.5 106.5 -4.3776 0 0 0 0.23508 1 21757 21757 1.0715 0 1 + 52690 18433 35045 35066 51563 51563 -0.06182731004935249 VTNVVINGK 9 Unmodified _VTNVVINGK_ 0 0 0 ENST00000449986.1_1_2:12246714-12247027:+|nuORF ENST00000449986.1_1_2:12246714-12247027:+|nuORF ENST00000449986.1_1_2:12246714-12247027:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1910705566406 3 315.190553 942.549831 NaN NaN NaN NaN NaN NaN NaN 83.646 1 79.947 79.447 80.447 -3.6985 0 0 0 0.23508 1 15971 15971 2.7352 0 1 52691 9969 35046 35067 51564 51564 0.07625760305847962 VTPARRRLL 9 Unmodified _VTPARRRLL_ 0 0 0 ENSG00000165188|ENST00000489339|RNF183 ENSG00000165188|ENST00000489339|RNF183 ENSG00000165188|ENST00000489339|RNF183 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2844848632812 2 541.351274 1080.688 NaN NaN NaN NaN NaN NaN NaN 162.75 1 157.96 157.46 158.46 -4.7898 0 0 0 0.23508 1 32397 32397 7.2892 0 1 52692 5605 35047 35068 51565 51565 0.15087928344996726 VTPAVIKKPQ 10 Unmodified _VTPAVIKKPQ_ 0 0 0 REV__AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant REV__AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2748413085938 2 540.842416 1079.67028 0.29939 0.00016192 0.84856 0.00045894 1.148 0.00062086 541.3437611375293 136.41 0.27988 136.41 136.2 136.48 0 10 7 2 0 0 0 0.89521 1 27044 27044 3.5965 0 1 2758400 + 52693 13091 35048 35069 51566 51566 0.13363168299474637 VTPEDILR 8 Unmodified _VTPEDILR_ 0 0 0 nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14;ENST00000578942.5_1_18:210315-211281:+|nuORF nc|ENSG00000101557|P54578-2|USP14 nc|ENSG00000101557|P54578-2|USP14 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.8584289550781 3 314.846675 941.518196 NaN NaN NaN NaN NaN NaN NaN 9.5485 1 8.7542 8.2542 9.2542 -0.79424 0 0 0 0.21486 1 1112 1112 0.45834 0 1 52694 2075 35049 35070 51567 51567 0.04509767551917321 VTPENQTLNY 10 Unmodified _VTPENQTLNY_ 0 0 0 QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;QSER1|p.I1584*|1|0.24|ENSG00000060749|chr11:32969069-32969069|A/-|frameshift_variant;ENSG00000060749|ENST00000650167|QSER1;QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant;nc|ENSG00000060749|Q2KHR3|QSER1 QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.2910461425781 3 393.527782 1177.56152 -0.010062 -3.9596E-06 0.072863 2.8674E-05 0.062802 2.4714E-05 393.52782404501215 32.164 0.28415 29.934 29.833 30.117 -2.2305 10 7 2 0 0 0 0.91149 1 5835 5835 1.9064 0 1 349950 52695 1313 35050 35071 51568 51568 -0.02016087461470306 VTPFTFLI 8 Unmodified _VTPFTFLI_ 0 0 0 ENSG00000277932|ENST00000610445|OR52E5 ENSG00000277932|ENST00000610445|OR52E5 ENSG00000277932|ENST00000610445|OR52E5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 469.2740783691406 2 469.273304 936.532055 NaN NaN NaN NaN NaN NaN NaN 144.85 1 139.9 139.4 140.4 -4.9445 0 0 0 0.21486 1 27989 27989 5.7604 0 1 52696 8039 35051 35072 51569 51569 0.061250450509987786 VTPILRRLK 9 Unmodified _VTPILRRLK_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.781982421875 2 548.371675 1094.7288 0.22762 0.00012482 1.7323 0.00094993 1.9599 0.0010748 548.3722765414582 140.69 0.17642 136.04 135.91 136.09 -4.6493 5 4 2 0 0 0 0.65319 1 27786 27786 0.0033805 0 1 2002200 52697 11593 35052 35073 51570 51570 0.18522269664595115 VTPLIMFIL 9 Unmodified _VTPLIMFIL_ 0 0 0 ENSG00000236398|ENST00000446620|TAS2R39 ENSG00000236398|ENST00000446620|TAS2R39 ENSG00000236398|ENST00000446620|TAS2R39 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.69287109375 2 523.819564 1045.62458 NaN NaN NaN NaN NaN NaN NaN 131.32 1 126.48 125.98 126.98 -4.8355 0 0 0 0.23508 1 25219 25219 4.756 0 1 52698 7824 35053 35074 51571 51571 0.10358806792896758 VTPLLLLSLL 10 Unmodified _VTPLLLLSLL_ 0 0 0 REV__ENST00000496342.1_1_22:29656732-29660364:-|nuORF REV__ENST00000496342.1_1_22:29656732-29660364:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2708129882812 2 541.365193 1080.71583 0.33868 0.00018335 4.4189 0.0023922 4.7575 0.0025756 541.3683609982656 152.94 0.14093 148.17 148.08 148.22 -4.7684 5 3 2 0 0 0 0.91149 1 30380 30380 0.40072 0 1 986790 + 52699 14681 35054 35075 51572 51572 0.17870393761882042 VTPMEINL 8 Unmodified _VTPMEINL_ 0 0 0 REV__ENSG00000068097|ENST00000184956|HEATR6 REV__ENSG00000068097|ENST00000184956|HEATR6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23876953125 2 458.744053 915.473554 0.27128 0.00012445 0.13073 5.9972E-05 0.40201 0.00018442 458.74399762265256 125.53 0.59998 120.77 120.44 121.04 -4.7681 26 16 2 0 0 0 0.50973 1 24139 24139 24.674 0 1 1745600 + 52700 14222 35055 35076 51573 51573 0.0124362041420909 VTPMTTLAL 9 Unmodified _VTPMTTLAL_ 0 0 0 REV__OR51B5|p.G81E|1|0.17|ENSG00000167355|chr11:5343283-5343283|C/T|missense_variant REV__OR51B5|p.G81E|1|0.17|ENSG00000167355|chr11:5343283-5343283|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 316.18048095703125 3 316.180778 945.520504 NaN NaN NaN NaN NaN NaN NaN 168.49 1 168.49 167.99 168.99 0 0 0 0 0.23508 1 34511 34511 1.1933 0 1 + 52701 17919 35056 35077 51574 51574 0.04556479965344806 VTPNHTENRI 10 Unmodified _VTPNHTENRI_ 0 0 0 REV__ENSG00000105976|ENST00000397752|MET REV__ENSG00000105976|ENST00000397752|MET MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2591552734375 2 590.807094 1179.59963 -1.5954 -0.00094259 -0.63937 -0.00037775 -2.2348 -0.0013203 590.8067407606143 15.155 0.24774 13.944 13.818 14.065 -1.2106 10 6 2 0 0 0 0.91149 1 2054 2054 1.3295 0 1 2120300 + 52702 15025 35057 35078 51575 51575 0.017018432438362652 VTPPKGRI 8 Unmodified _VTPPKGRI_ 0 0 0 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 433.8786926269531 2 434.27417 866.533787 NaN NaN NaN NaN NaN NaN NaN 116.46 1 111.88 111.38 112.38 -4.5815 0 0 0 0.21486 1 22349 22349 9.3474 0 1 52703 1990 35058 35079 51576 51576 0.09518098859598467 VTPPLPRQ 8 Unmodified _VTPPLPRQ_ 0 0 0 REV__ENST00000368366.5_1_1:155217575-155221373:-|nuORF REV__ENST00000368366.5_1_1:155217575-155221373:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 303.2314147949219 3 303.18351 906.528701 NaN NaN NaN NaN NaN NaN NaN 32.3 1 30.273 29.773 30.773 -2.0264 0 0 0 0.21486 1 5600 5600 0.40072 0 1 + 52704 20938 35059 35080 51577 51577 0.07169794996991641 VTPPMPLLTP 10 Unmodified _VTPPMPLLTP_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2858276367188 2 533.304278 1064.594 NaN NaN NaN NaN NaN NaN NaN 146.74 1 142.06 141.56 142.56 -4.6868 0 0 0 0.22588 1 29105 29105 9.3831 0.63772 1 52705 6651 35060 35081 51578 51578 0.06429028407819715 VTPPPPPG 8 Unmodified _VTPPPPPG_ 0 0 0 REV__ENST00000532085.1_1_11:118900045-118900432:-|nuORF REV__ENST00000532085.1_1_11:118900045-118900432:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.20556640625 2 381.213246 760.41194 NaN NaN NaN NaN NaN NaN NaN 51.23 1 48.185 47.685 48.685 -3.0453 0 0 0 0.21486 1 9404 9404 5.7604 0 1 + 52706 22781 35061 35082 51579 51579 0.02215056777231439 VTPPRRGF 8 Unmodified _VTPPRRGF_ 0 0 0 REV__ENSG00000186766|ENST00000388920|FOXI2 REV__ENSG00000186766|ENST00000388920|FOXI2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25225830078125 2 465.269419 928.524284 NaN NaN NaN NaN NaN NaN NaN 115.35 1 110.8 110.3 111.3 -4.555 0 0 0 0.21486 1 22147 22147 5.7604 0 1 + 52707 19051 35062 35083 51580 51580 0.05716330574091444 VTPQAAPA 8 Unmodified _VTPQAAPA_ 0 0 0 REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4 REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 377.8580322265625 2 377.708328 753.402104 NaN NaN NaN NaN NaN NaN NaN 53.912 1 50.777 50.277 51.277 -3.1352 0 0 0 0.23749 1 9932 9932 0.0082765 0 1 + 52708 16891 35063 35084 51581 51581 0.015538687718390065 VTPSKASQP 9 Unmodified _VTPSKASQP_ 0 0 0 REV__GPBP1L1|p.A24V|1|0.29|ENSG00000159592|chr1:45655309-45655309|G/A|missense_variant REV__GPBP1L1|p.A24V|1|0.29|ENSG00000159592|chr1:45655309-45655309|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22808837890625 2 457.750724 913.486896 NaN NaN NaN NaN NaN NaN NaN 67.074 1 63.577 63.077 64.077 -3.4965 0 0 0 0.21469 1 12580 12580 19.257 1.1106 1 + 52709 23585 35064 35085 51582 51582 0.026691945178072274 VTPVPQVSLSP 11 Unmodified _VTPVPQVSLSP_ 0 0 0 REV__nc|ENSG00000239998|Q8N149-3|LILRA2 REV__nc|ENSG00000239998|Q8N149-3|LILRA2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21160888671875 3 375.216768 1122.62847 -0.44694 -0.0001677 0.54113 0.00020304 0.094188 3.5341E-05 375.2168737559323 17.347 0.17152 16.075 15.938 16.109 -1.2722 6 4 2 0 0 0 0.96157 1 2533 2533 2.6312 0 1 224510 + 52710 19777 35065 35086 51583 51583 0.07206567820298915 VTQDLSASV 9 Unmodified _VTQDLSASV_ 0 0 0 REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2401428222656 2 460.24019 918.465826 0.42721 0.00019662 -1.1031 -0.0005077 -0.6759 -0.00031108 460.23971209266887 75.905 0.55476 75.905 75.681 76.236 0 26 15 2 0 0 0 0.10573 1 14747 14747 53.833 6.0841 1 2863600 + 52711 13562 35066 35087 51584 51584 0.0033318441828669165 VTQDLSASV 9 Unmodified _VTQDLSASV_ 0 0 0 REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.240234375 2 460.24019 918.465826 -0.15512 -7.1392E-05 0.60189 0.00027701 0.44677 0.00020562 460.2404396156311 47.804 0.45681 44.935 44.742 45.199 -2.869 21 12 2 0 0 0 0.35556 1 9018 9018 12.241 11.724 1 1330000 + 52712 13562 35066 35087 51585 51585 0.0033318441828669165 VTQDLSASV 9 Unmodified _VTQDLSASV_ 0 0 0 REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2312316894531 2 460.24019 918.465826 -0.054096 -2.4897E-05 -0.48561 -0.0002235 -0.5397 -0.00024839 460.2396973016305 79.196 0.70587 75.686 75.483 76.189 -3.5102 30 19 2 0 0 0 0.07738 1 15448 15448 62.573 14.824 1 2914500 + 52713 13562 35066 35087 51586 51586 0.0033318441828669165 VTQDLSASV 9 Unmodified _VTQDLSASV_ 0 0 0 REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24005126953125 2 460.24019 918.465826 -0.038681 -1.7803E-05 0.089768 4.1315E-05 0.051086 2.3512E-05 460.2402403736512 47.977 0.56563 45.035 44.686 45.252 -2.9421 22 15 2 0 0 0 0.35556 1 8746 8746 12.241 0 1 876790 + 52714 13562 35066 35087 51587 51587 0.0033318441828669165 VTQDLSASV 9 Unmodified _VTQDLSASV_ 0 0 0 REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.231201171875 2 460.24019 918.465826 -0.11156 -5.1345E-05 2.1086 0.00097047 1.997 0.00091912 460.2399173802921 79.692 0.91512 75.887 75.406 76.321 -3.8048 36 25 3 0 0 0 0.086396 2 15153 15143;15153 60.074 13.875 1 3091600 + 52715 13562 35066 35087 51588;51589 51589 0.0033318441828669165 VTQDLSASV 9 Unmodified _VTQDLSASV_ 0 0 0 REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2408447265625 2 460.24019 918.465826 -0.090265 -4.1544E-05 0.10569 4.8643E-05 0.015424 7.0989E-06 460.24030012327313 47.941 0.55349 44.991 44.708 45.261 -2.9499 20 15 2 0 0 0 0.35556 1 8742 8742 12.241 2.0901 1 954230 + 52716 13562 35066 35087 51590 51590 0.0033318441828669165 VTQDLSASV 9 Unmodified _VTQDLSASV_ 0 0 0 REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2311706542969 2 460.24019 918.465826 NaN NaN NaN NaN NaN NaN NaN 79.647 1 75.971 75.471 76.471 -3.676 0 0 0 0.029966 1 15177 15177 62.573 14.824 1 + 52717 13562 35066 35087 51591 51591 0.0033318441828669165 VTQDLSASV 9 Unmodified _VTQDLSASV_ 0 0 0 REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant REV__COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 460.24019 918.465826 -0.054096 -2.4897E-05 -0.48561 -0.0002235 -0.5397 -0.00024839 460.2396973016305 79.196 0.70587 75.686 75.483 76.189 -3.5102 -0.14024 0.00029267 NaN 62.573 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2914500 + 52718 13562 35066 35087 0.0033318441828669165 VTQFHGKY 8 Unmodified _VTQFHGKY_ 0 0 0 REV__ENST00000461942.5_1_9:116079031-116083765:-|nuORF REV__ENST00000461942.5_1_9:116079031-116083765:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2530212402344 2 490.253434 978.492316 NaN NaN NaN NaN NaN NaN NaN 25.197 1 25.197 24.697 25.697 0 0 0 0 0.21486 1 4363 4363 9.3474 0 1 + 52719 16965 35067 35088 51592 51592 0.002209181002854166 VTQGILEN 8 Unmodified _VTQGILEN_ 0 0 0 REV__SUPT5H|p.R711H|1|0.23|ENSG00000196235|chr19:39472906-39472906|G/A|missense_variant REV__SUPT5H|p.R711H|1|0.23|ENSG00000196235|chr19:39472906-39472906|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2358703613281 2 437.23745 872.460347 -0.11444 -5.0038E-05 -0.19368 -8.4683E-05 -0.30812 -0.00013472 437.23734473216797 85.896 0.772 82.167 81.853 82.625 -3.7289 40 21 3 0 0 0 0.44108 1 16383 16383 30.637 0 1 2468100 + 52720 19230 35068 35089 51593 51593 0.019015056264720442 VTQHLLQW 8 Unmodified _VTQHLLQW_ 0 0 0 REV__nc|ENSG00000170234|Q96N64-2|PWWP2A REV__nc|ENSG00000170234|Q96N64-2|PWWP2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.2005920410156 3 342.190665 1023.55016 NaN NaN NaN NaN NaN NaN NaN 72.15 1 68.612 68.112 69.112 -3.5385 0 0 0 0.21486 1 13687 13687 3.9444 0 1 + 52721 24161 35069 35090 51594 51594 0.03933180025705951 VTQIAILTG 9 Unmodified _VTQIAILTG_ 0 0 0 REV__nc|ENSG00000143379|Q15047-2|SETDB1 REV__nc|ENSG00000143379|Q15047-2|SETDB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2389221191406 2 458.279118 914.543683 0.31853 0.00014598 0.02745 1.258E-05 0.34598 0.00015855 458.27900273853845 69.801 0.51726 66.221 65.898 66.416 -3.5798 19 14 2 0 0 0 0.74858 1 13154 13154 17.113 3.2068 1 864110 + 52722 16723 35070 35091 51595 51595 0.08299242074326685 VTQIAILTG 9 Unmodified _VTQIAILTG_ 0 0 0 REV__nc|ENSG00000143379|Q15047-2|SETDB1 REV__nc|ENSG00000143379|Q15047-2|SETDB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 458.279118 914.543683 -0.17815 -8.1641E-05 -0.027844 -1.276E-05 -0.20599 -9.4402E-05 458.27882951353007 69.31 0.39084 66.13 65.941 66.331 -3.1796 -0.045387 -3.3679E-05 NaN 17.113 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 975450 + 52723 16723 35070 35091 0.08299242074326685 VTQIVNIV 8 Unmodified _VTQIVNIV_ 0 0 0 ENST00000522126.5_1_5:141021104-141024617:-|nuORF ENST00000522126.5_1_5:141021104-141024617:-|nuORF ENST00000522126.5_1_5:141021104-141024617:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 443.1965637207031 2 443.273835 884.533118 NaN NaN NaN NaN NaN NaN NaN 135.3 1 135.3 134.8 135.8 0 0 0 0 0.23749 1 26800 26800 0.0082765 0 1 52724 10860 35071 35092 51596 51596 0.08623259419880469 VTQNDMIMAE 10 Unmodified _VTQNDMIMAE_ 0 0 0 LRRC49|p.P583Tfs*9|1|0.43|ENSG00000137821|chr15:71037214-71037215|-/A|frameshift_variant;nc|ENSG00000137821|Q8IUZ0-3|LRRC49;nc|ENSG00000137821|Q8IUZ0-4|LRRC49;ENSG00000137821|ENST00000260382|LRRC49;nc|ENSG00000137821|Q8IUZ0-2|LRRC49 LRRC49|p.P583Tfs*9|1|0.43|ENSG00000137821|chr15:71037214-71037215|-/A|frameshift_variant LRRC49|p.P583Tfs*9|1|0.43|ENSG00000137821|chr15:71037214-71037215|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3121337890625 2 576.257199 1150.49985 NaN NaN NaN NaN NaN NaN NaN 159.92 1 155.12 154.62 155.62 -4.7952 0 0 0 0.22588 1 31798 31798 6.2058 0.9089 1 52725 4116 35072 35093 51597 51597 -0.0693847847660436 VTQPLGTAE 9 Unmodified _VTQPLGTAE_ 0 0 0 REV__AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant REV__AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2386779785156 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 102.57 1 98.251 97.751 98.751 -4.3208 0 0 0 0.23508 1 19638 19638 11.64 0 1 + 52726 12989 35073 35094 51598 51598 0.010254882809135779 VTQQEQQNL 9 Unmodified _VTQQEQQNL_ 0 0 0 nc|ENSG00000066855|Q15390-2|MTFR1;ENSG00000066855|ENST00000262146|MTFR1;ENST00000424808.6_1_8:66582187-66620357:+|nuORF nc|ENSG00000066855|Q15390-2|MTFR1 nc|ENSG00000066855|Q15390-2|MTFR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7941284179688 2 544.272552 1086.53055 0.1881 0.00010238 0.89533 0.0004873 1.0834 0.00058968 544.7744519806237 157.46 0.10886 152.17 152.11 152.22 -5.2854 4 2 2 0 0 0 0.80521 1 30552 30552 15.847 5.7733 1 643190 52727 1378 35074 35095 51599 51599 -0.009252407757003311 VTQRALYVE 9 Unmodified _VTQRALYVE_ 0 0 0 ENSG00000197714|ENST00000360338|ZNF460;ZNF460|p.Y476Mfs*57|1|0.28|ENSG00000197714|chr19:57291964-57291964|C/-|frameshift_variant;ZNF460|p.N169Ifs*25|1|0.31|ENSG00000197714|chr19:57291044-57291044|A/-|frameshift_variant ENSG00000197714|ENST00000360338|ZNF460 ENSG00000197714|ENST00000360338|ZNF460 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.201904296875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 121.48 1 121.48 120.98 121.98 0 0 0 0 0.23508 1 23947 23947 2.086 0.49373 1 52728 7392 35075 35096 51600 51600 0.0461712798901317 VTQRYHQY 8 Unmodified _VTQRYHQY_ 0 0 0 REV__MRPS26|p.R59H|1|0.29|ENSG00000125901|chr20:3046244-3046244|G/A|missense_variant REV__MRPS26|p.R59H|1|0.29|ENSG00000125901|chr20:3046244-3046244|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7892456054688 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 140.52 1 135.87 135.37 136.37 -4.6493 0 0 0 0.21486 1 27744 27744 12.532 0.89125 1 + 52729 15841 35076 35097 51601 51601 -0.012531959850548446 VTQSKKKKKK 10 Unmodified _VTQSKKKKKK_ 0 0 0 REV__ENSG00000008086|ENST00000623535|CDKL5 REV__ENSG00000008086|ENST00000623535|CDKL5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.29736328125 2 601.900797 1201.78704 0.39679 0.00023883 -0.9108 -0.00054821 -0.51401 -0.00030938 602.403425301187 155.5 0.23776 155.5 155.32 155.55 0 8 6 2 0 0 0 0.91149 1 31158 31158 2.4985 0 1 2639100 + 52730 13896 35077 35098 51602 51602 0.19421906519210097 VTQSKTSV 8 Unmodified _VTQSKTSV_ 0 0 0 ENSG00000143669|ENST00000389793|LYST ENSG00000143669|ENST00000389793|LYST ENSG00000143669|ENST00000389793|LYST MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.238525390625 2 425.23745 848.460347 NaN NaN NaN NaN NaN NaN NaN 72.718 1 69.091 68.591 69.591 -3.6275 0 0 0 0.21039 1 13734 13734 16.942 0 1 52731 4511 35078 35099 51603 51603 0.030055056264814084 VTQTISHPP 9 Unmodified _VTQTISHPP_ 0 0 0 REV__ENSG00000065526|ENST00000375759|SPEN REV__ENSG00000065526|ENST00000375759|SPEN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2641296386719 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 77.401 1 77.401 76.901 77.901 0 0 0 0 0.23508 1 15049 15049 13.042 0 1 + 52732 14189 35079 35100 51604 51604 0.023328834091330464 VTQTQFSIY 9 Unmodified _VTQTQFSIY_ 0 0 0 REV__nc|ENSG00000168961|O00182-3|LGALS9 REV__nc|ENSG00000168961|O00182-3|LGALS9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7723999023438 2 543.776939 1085.53933 -0.087869 -4.7781E-05 0.1664 9.0482E-05 0.078526 4.2701E-05 543.7769675306715 111.21 0.52005 106.79 106.48 107 -4.4231 31 14 3 0 0 0 0.2219 1 21855 21855 36.127 8.4982 1 3342600 + 52733 24156 35080 35101 51605 51605 -2.2671392343909247E-05 VTQTQFSIY 9 Unmodified _VTQTQFSIY_ 0 0 0 REV__nc|ENSG00000168961|O00182-3|LGALS9 REV__nc|ENSG00000168961|O00182-3|LGALS9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7767944335938 2 543.776939 1085.53933 0.70597 0.00038389 0.17411 9.4677E-05 0.88008 0.00047856 543.7766967791914 110.9 0.56061 106.67 106.38 106.94 -4.2289 34 15 4 0 0 0 0.09143 1 21320 21320 58.679 0 1 2875300 + 52734 24156 35080 35101 51606 51606 -2.2671392343909247E-05 VTQVYNILDQP 11 Unmodified _VTQVYNILDQP_ 0 0 0 REV__ENSG00000198642|ENST00000359039|KLHL9 REV__ENSG00000198642|ENST00000359039|KLHL9 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 645.601806640625 2 645.340435 1288.66632 0.42103 0.00027171 0.32379 0.00020895 0.74481 0.00048066 645.8422090327363 172.29 0.1434 172.29 172.22 172.36 0 5 3 2 0 0 0 0.95337 1 35559 35559 1.1933 0 1 4945100 + 52735 19429 35081 35102 51607 51607 0.033530340150718985 VTRAERKGPG 10 Unmodified _VTRAERKGPG_ 0 0 0 REV__RELN|p.H3353Tfs*46|1|0.25|ENSG00000189056|chr7:103483777-103483777|G/-|frameshift_variant REV__RELN|p.H3353Tfs*46|1|0.25|ENSG00000189056|chr7:103483777-103483777|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5605163574219 3 357.540357 1069.59924 NaN NaN NaN NaN NaN NaN NaN 35.451 1 33.057 32.557 33.557 -2.3938 0 0 0 0.22588 1 6532 6532 8.9762 3.9287 1 + 52736 19188 35082 35103 51608 51608 0.06722468314660546 VTRALRVP 8 Unmodified _VTRALRVP_ 0 0 0 REV__nc|ENSG00000217128|Q8TF40-3|FNIP1 REV__nc|ENSG00000217128|Q8TF40-3|FNIP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 456.2937316894531 2 456.292894 910.571235 NaN NaN NaN NaN NaN NaN NaN 140.67 1 135.81 135.31 136.31 -4.8678 0 0 0 0.23487 1 27127 27127 0.063987 0 1 + 52737 19700 35083 35104 51609 51609 0.11237190125223151 VTRDEAEDYY 10 Unmodified _VTRDEAEDYY_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7727661132812 2 630.772582 1259.53061 0.63242 0.00039891 -0.85334 -0.00053826 -0.22092 -0.00013935 630.7723218811769 49.603 0.34843 49.603 49.404 49.753 0 17 9 2 0 0 0 0.5575 1 9365 9365 21.537 0 1 1325700 52738 1057 35084 35105 51610 51610 -0.08877285566359205 VTRDKRDR 8 Unmodified _VTRDKRDR_ 0 0 0 REV__ANKRD18A|p.H210Rfs*3|1|0.07|ENSG00000180071|chr9:38610386-38610387|-/TCTT|frameshift_variant REV__ANKRD18A|p.H210Rfs*3|1|0.07|ENSG00000180071|chr9:38610386-38610387|-/TCTT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6768188476562 2 523.296696 1044.57884 0.19003 9.9444E-05 -2.3794 -0.0012451 -2.1893 -0.0011457 523.7956950024501 143.79 0.41629 143.79 143.58 144 0 13 11 2 0 0 0 1.0011 1 28711 28711 7.9102 0.62092 1 12566000 + 52739 13056 35085 35106 51611 51611 0.05833297654839953 VTRDKRDR 8 Unmodified _VTRDKRDR_ 0 0 0 REV__ANKRD18A|p.H210Rfs*3|1|0.07|ENSG00000180071|chr9:38610386-38610387|-/TCTT|frameshift_variant REV__ANKRD18A|p.H210Rfs*3|1|0.07|ENSG00000180071|chr9:38610386-38610387|-/TCTT|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 523.296696 1044.57884 -0.44878 -0.00023485 -5.32 -0.0027839 -5.7688 -0.0030188 523.7960460605333 149.22 0.17126 144.02 143.88 144.05 -5.1994 0.11838 -0.0024877 NaN 7.9102 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 3188700 + 52740 13056 35085 35106 0.05833297654839953 VTRDLVNY 8 Unmodified _VTRDLVNY_ 0 0 0 tr|U7SQ39|U7SQ39_FUSNURNDeffluxpumpmembranefusionproteinbarrel-sandwichdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01679PE=3SV=1 tr|U7SQ39|U7SQ39_FUSNURNDeffluxpumpmembranefusionproteinbarrel-sandwichdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01679PE=3SV=1 tr|U7SQ39|U7SQ39_FUSNURNDeffluxpumpmembranefusionproteinbarrel-sandwichdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01679PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2629699707031 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 44.753 1 44.753 44.253 45.253 0 0 0 0 0.12583 1 8402 8402 6.1918 2.6048 1 52741 26053 35086 35107 51612 51612 0.023328834091216777 VTRFRGMI 8 Unmodified _VTRFRGMI_ 0 0 0 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1;ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000136636|ENST00000259154|KCTD3 SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27166748046875 2 490.278929 978.543305 NaN NaN NaN NaN NaN NaN NaN 147.09 1 147.09 146.59 147.59 0 0 0 0 0.21486 1 29421 29421 9.3474 0 1 52742 5252;4025 35087 35108 51613 51613 0.05317543873491104 VTRGEAHHH 9 Unmodified _VTRGEAHHH_ 0 0 0 ENST00000207636.9_1_22:19950294-19951640:+|nuORF;ENST00000403710.5_1_22:19950294-19951749:+|nuORF ENST00000207636.9_1_22:19950294-19951640:+|nuORF ENST00000207636.9_1_22:19950294-19951640:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2618408203125 2 522.260114 1042.50567 NaN NaN NaN NaN NaN NaN NaN 85.877 1 82.15 81.65 82.65 -3.727 0 0 0 0.19512 1 16789 16789 12.241 0 1 52743 8094 35088 35109 51614 51614 -0.013878310677910122 VTRKDQRL 8 Unmodified _VTRKDQRL_ 0 0 0 REV__nc|ENSG00000101972|Q8N3U4|STAG2 REV__nc|ENSG00000101972|Q8N3U4|STAG2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 340.1895446777344 3 339.205085 1014.59343 0.092119 3.1247E-05 -0.4936 -0.00016743 -0.40148 -0.00013618 339.2049012271314 25.577 0.41068 23.942 23.718 24.128 -1.6347 28 11 3 0 0 0 0.88942 1 4187 4187 0.40072 0 1 4136800 + 52744 14812 35089 35110 51615 51615 0.08671369802982554 VTRNDARAY 9 Unmodified _VTRNDARAY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2738647460938 2 533.275429 1064.53631 NaN NaN NaN NaN NaN NaN NaN 140.75 1 135.76 135.26 136.26 -4.9877 0 0 0 0.22251 1 27093 27093 16.942 1.0951 1 52745 2305 35090 35111 51616 51616 0.0066190252659907856 VTRNQSKKRS 10 Unmodified _VTRNQSKKRS_ 0 0 0 REV__ENST00000481667.1_1_7:72954286-72958015:-|nuORF REV__ENST00000481667.1_1_7:72954286-72958015:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2744750976562 2 602.34946 1202.68437 NaN NaN NaN NaN NaN NaN NaN 142.01 1 137.14 136.64 137.64 -4.8678 0 0 0 0.22588 1 27401 27401 5.2969 0 1 + 52746 22178 35091 35112 51617 51617 0.09113213780460683 VTRPPSHL 8 Unmodified _VTRPPSHL_ 0 0 0 REV__ENST00000335464.9_1_17:72791728-72815926:+|nuORF REV__ENST00000335464.9_1_17:72791728-72815926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7601318359375 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 160.2 1 160.2 159.7 160.7 0 0 0 0 0.23025 1 32165 32165 0.12286 0 1 + 52747 20655 35092 35113 51618 51618 0.051766243371730525 VTRPPSHL 8 Unmodified _VTRPPSHL_ 0 0 0 REV__ENST00000335464.9_1_17:72791728-72815926:+|nuORF REV__ENST00000335464.9_1_17:72791728-72815926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7589111328125 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 87.294 1 83.325 82.825 83.825 -3.9692 0 0 0 0.22684 1 16624 16624 1.7423 0 1 + 52748 20655 35092 35113 51619 51619 0.051766243371730525 VTRPPSHL 8 Unmodified _VTRPPSHL_ 0 0 0 REV__ENST00000335464.9_1_17:72791728-72815926:+|nuORF REV__ENST00000335464.9_1_17:72791728-72815926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7598876953125 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 87.077 1 83.348 82.848 83.848 -3.7289 0 0 0 0.22684 1 16658 16658 1.7423 0 1 + 52749 20655 35092 35113 51620 51620 0.051766243371730525 VTRPPSHL 8 Unmodified _VTRPPSHL_ 0 0 0 REV__ENST00000335464.9_1_17:72791728-72815926:+|nuORF REV__ENST00000335464.9_1_17:72791728-72815926:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7597351074219 2 453.761426 905.5083 NaN NaN NaN NaN NaN NaN NaN 87.364 1 83.636 83.136 84.136 -3.7289 0 0 0 0.22934 1 16714 16714 1.7423 0 1 + 52750 20655 35092 35113 51621 51621 0.051766243371730525 VTRRDVNP 8 Unmodified _VTRRDVNP_ 0 0 0 REV__LRFN4|p.V623*|1|0.31|ENSG00000173621|chr11:66860149-66860149|G/-|frameshift_variant REV__LRFN4|p.V623*|1|0.31|ENSG00000173621|chr11:66860149-66860149|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7292785644531 2 478.76724 955.519927 NaN NaN NaN NaN NaN NaN NaN 129.24 1 124.61 124.11 125.11 -4.6292 0 0 0 0.21039 1 25476 25476 16.942 3.4344 1 + 52751 18364 35093 35114 51622 51622 0.04038821360506972 VTRRLRVGR 9 Unmodified _VTRRLRVGR_ 0 0 0 REV__ENSG00000132613|ENST00000338779|MTSS2 REV__ENSG00000132613|ENST00000338779|MTSS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 556.87353515625 2 556.859798 1111.70504 NaN NaN NaN NaN NaN NaN NaN 10.545 1 9.641 9.141 10.141 -0.90401 0 0 0 0.23508 1 1327 1327 0 0 1 + 52752 16126 35094 35115 51623 51623 0.15365848950796135 VTRRRMGAP 9 Unmodified _VTRRRMGAP_ 0 0 0 REV__ENST00000491836.2_1_6:166853785-166873036:-|nuORF REV__ENST00000491836.2_1_6:166853785-166873036:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2824096679688 2 522.298185 1042.58182 0.3182 0.00016619 0.15774 8.2385E-05 0.47593 0.00024858 522.2959994857321 140.71 0.31378 135.84 135.6 135.91 -4.8678 15 8 3 0 0 0 0.84208 1 27121 27121 7.2892 3.3448 1 4310800 + 52753 22323 35095 35116 51624 51624 0.06222849508003492 VTRRRQLFK 9 Unmodified _VTRRRQLFK_ 0 0 0 ENST00000546265.1_1_12:11199669-11273613:-|nuORF ENST00000546265.1_1_12:11199669-11273613:-|nuORF ENST00000546265.1_1_12:11199669-11273613:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2843017578125 2 602.375281 1202.73601 1.0805 0.00065086 -0.10635 -6.4063E-05 0.97414 0.0005868 602.8786346845213 144.02 0.13437 139.35 139.26 139.4 -4.6694 5 3 2 0 0 0 0.87258 1 28499 28499 4.3292 0.73274 1 7726700 52754 11128 35096 35117 51625 51625 0.14275002265003423 VTRYSVALA 9 Unmodified _VTRYSVALA_ 0 0 0 EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant;nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4 EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant EPHA4|p.P846Sfs*25|1|0.19|ENSG00000116106|chr2:221430113-221430114|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2582702636719 2 490.282192 978.549831 0.17319 8.4911E-05 -0.44112 -0.00021628 -0.26793 -0.00013136 490.28195943227706 112.06 0.55919 112.06 111.8 112.36 0 28 15 2 0 0 0 0.27865 1 22044 22044 21.537 0 1 2973400 52755 2906 35097 35118 51626 51626 0.05969760305845284 VTSATAPNL 9 Unmodified _VTSATAPNL_ 0 0 0 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4 HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2356262207031 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 68.984 1 68.984 68.484 69.484 0 0 0 0 0.20628 1 13346 13346 21.747 0 1 52756 6261 35098 35119 51627 51627 0.019015056264720442 VTSFIITNLGS 11 Unmodified _VTSFIITNLGS_ 0 0 0 nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.Q4263Sfs*13|1|0.12|ENSG00000183914|chr17:7832639-7832639|C/-|frameshift_variant;DNAH2|p.K4326Rfs*84|3|0.27|ENSG00000183914|chr17:7832920-7832920|C/-|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2 nc|ENSG00000183914|Q9P225-2|DNAH2 nc|ENSG00000183914|Q9P225-2|DNAH2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.317138671875 2 576.318971 1150.62339 NaN NaN NaN NaN NaN NaN NaN 163.07 1 163.07 162.57 163.57 0 0 0 0 0.22595 1 32835 32835 11.495 2.7493 1 52757 863 35099 35120 51628 51628 0.054102639576512956 VTSFLWLN 8 Unmodified _VTSFLWLN_ 0 0 0 ENSG00000186090|ENST00000428798|HTR3D ENSG00000186090|ENST00000428798|HTR3D ENSG00000186090|ENST00000428798|HTR3D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2662048339844 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 47.401 1 44.451 43.951 44.951 -2.9499 0 0 0 0.10839 1 8654 8654 6.1918 3.3092 1 52758 7033 35100 35121 51629 51629 0.027349729028514957 VTSHMLLE 8 Unmodified _VTSHMLLE_ 0 0 0 REV__ENSG00000146426|ENST00000682666|TIAM2 REV__ENSG00000146426|ENST00000682666|TIAM2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2422180175781 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 162.55 1 157.76 157.26 158.26 -4.7898 0 0 0 0.21486 1 32349 32349 12.532 0 1 + 52759 16889 35101 35122 51630 51630 0.0017073627144554848 VTSKGSGN 8 Unmodified _VTSKGSGN_ 0 0 0 REV__ENSG00000004846|ENST00000404938|ABCB5;REV__ENSG00000168394|ENST00000354258|TAP1;REV__TAP2|p.K532Sfs*29|1|0.43|ENSG00000204267|chr6:32830307-32830307|T/-|frameshift_variant REV__ENSG00000004846|ENST00000404938|ABCB5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2121276855469 2 375.193042 748.371532 NaN NaN NaN NaN NaN NaN NaN 89.561 1 85.702 85.202 86.202 -3.8595 0 0 0 0.23749 1 17523 17523 0.0082765 0 1 + 52760 13841;18020;19520 35102 35123 51631 51631 -0.012719096131945662 VTSLEWETM 9 Unmodified _VTSLEWETM_ 0 0 0 ENSG00000186448|ENST00000344387|ZNF197 ENSG00000186448|ENST00000344387|ZNF197 ENSG00000186448|ENST00000344387|ZNF197 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7728881835938 2 548.254982 1094.49541 0.18941 0.00010385 0.81402 0.00044629 1.0034 0.00055014 548.2552313800438 130.14 0.6087 125.5 125.22 125.83 -4.6359 21 16 2 0 0 0 0.38406 1 25707 25707 1.2148 0 1 1761700 52761 7058 35103 35124 51632 51632 -0.04805619627904889 VTSLNHKY 8 Unmodified _VTSLNHKY_ 0 0 0 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8 DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2441711425781 2 481.258717 960.50288 0.417 0.00020069 0.32029 0.00015414 0.73729 0.00035483 481.25845319919785 31.78 0.59933 29.632 29.265 29.864 -2.1483 25 16 2 0 0 0 0.71876 1 5495 5495 11.64 0 1 703990 52762 867 35104 35125 51633 51633 0.02104900754704886 VTSNLSANI 9 Unmodified _VTSNLSANI_ 0 0 0 INTS2|p.T812Sfs*11|1|0.15|ENSG00000108506|chr17:61877931-61877934|TGTT/-|frameshift_variant;INTS2|p.F1100Lfs*26|2|0.29|ENSG00000108506|chr17:61867978-61867978|A/-|frameshift_variant;ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2 INTS2|p.T812Sfs*11|1|0.15|ENSG00000108506|chr17:61877931-61877934|TGTT/-|frameshift_variant INTS2|p.T812Sfs*11|1|0.15|ENSG00000108506|chr17:61877931-61877934|TGTT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2315368652344 2 459.748182 917.481811 -0.079763 -3.6671E-05 0.38843 0.00017858 0.30866 0.00014191 459.74826676481257 44.668 0.45655 41.902 41.629 42.085 -2.7661 15 12 2 0 0 0 0.1428 1 8112 8112 2.6312 0 1 695850 52763 2478 35105 35126 51634 51634 0.01976890655180341 VTSNQEKGV 9 Unmodified _VTSNQEKGV_ 0 0 0 REV__TNN|p.S848N|1|0.42|ENSG00000120332|chr1:175118717-175118717|G/A|missense_variant REV__TNN|p.S848N|1|0.42|ENSG00000120332|chr1:175118717-175118717|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7737121582031 2 481.251089 960.487624 0.00093799 4.5141E-07 0.12975 6.244E-05 0.13068 6.2891E-05 481.25114282534514 147.47 0.41809 147.47 147.26 147.68 0 19 11 2 0 0 0 0.26282 1 29501 29501 1.2148 0.80657 1 2012400 + 52764 24829 35106 35127 51635 51635 0.005799891668630153 VTSPITHTA 9 Unmodified _VTSPITHTA_ 0 0 0 nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1;NAV1|p.K1211Efs*5|1|0.68|ENSG00000134369|chr1:201803700-201803701|AA/-|frameshift_variant;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1 nc|ENSG00000134369|Q8NEY1-6|NAV1 nc|ENSG00000134369|Q8NEY1-6|NAV1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 464.1634826660156 2 463.750724 925.486896 0.37098 0.00017204 -0.64449 -0.00029888 -0.27351 -0.00012684 463.75040088346765 42.179 0.41387 42.179 41.973 42.387 0 17 11 2 0 0 0 0.84208 1 7849 7849 7.2892 0 1 767620 52765 3849 35107 35128 51636 51636 0.021171945177911766 VTSPITHTA 9 Unmodified _VTSPITHTA_ 0 0 0 nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1;NAV1|p.K1211Efs*5|1|0.68|ENSG00000134369|chr1:201803700-201803701|AA/-|frameshift_variant;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1 nc|ENSG00000134369|Q8NEY1-6|NAV1 nc|ENSG00000134369|Q8NEY1-6|NAV1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 463.750724 925.486896 -0.069707 -3.2326E-05 -0.1099 -5.0967E-05 -0.17961 -8.3293E-05 463.75059506322856 44.885 0.46367 42.118 41.835 42.298 -2.7661 0.00010801 0.00028551 NaN 7.2892 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 680090 52766 3849 35107 35128 0.021171945177911766 VTSPITHTA 9 Unmodified _VTSPITHTA_ 0 0 0 nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1;NAV1|p.K1211Efs*5|1|0.68|ENSG00000134369|chr1:201803700-201803701|AA/-|frameshift_variant;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1 nc|ENSG00000134369|Q8NEY1-6|NAV1 nc|ENSG00000134369|Q8NEY1-6|NAV1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 463.750724 925.486896 -0.10277 -4.766E-05 -0.21997 -0.00010201 -0.32274 -0.00014967 463.75075508122774 44.805 0.59616 42.058 41.85 42.446 -2.7475 -0.060782 0.00018343 NaN 7.2892 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 743460 52767 3849 35107 35128 0.021171945177911766 VTSTEGVRAY 10 Unmodified _VTSTEGVRAY_ 0 0 0 ENST00000471202.5_1_16:838684-840117:+|nuORF;ENST00000479976.5_1_16:838624-840569:+|nuORF;ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18;ENST00000464728.5_1_16:838721-840735:+|nuORF ENST00000471202.5_1_16:838684-840117:+|nuORF ENST00000471202.5_1_16:838684-840117:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2764282226562 2 541.77747 1081.54039 0.3157 0.00017104 -0.013665 -7.4036E-06 0.30203 0.00016363 541.7774272800326 21.584 0.60939 21.584 21.194 21.804 0 51 17 4 0 0 0 0.90091 1 3550 3550 6.2058 0 1 16287000 52768 3486 35108 35129 51637 51637 0.0028794722968541464 VTSVFTKGEI 10 Unmodified _VTSVFTKGEI_ 0 0 0 REV__nc|ENSG00000116678|P48357-5|LEPR REV__nc|ENSG00000116678|P48357-5|LEPR MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2733154296875 2 540.800414 1079.58628 0.36087 0.00019516 -0.53491 -0.00028928 -0.17404 -9.4119E-05 540.8001586009825 109.91 0.89272 109.91 109.47 110.37 0 40 25 2 0 0 0 0.32535 1 21542 21542 4.6586 0.18162 1 4297800 + 52769 15489 35109 35130 51638 51638 0.04966592411892634 VTTEEPTP 8 Unmodified _VTTEEPTP_ 0 0 0 ENST00000507123.1_1_4:8206912-8207257:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1 ENST00000507123.1_1_4:8206912-8207257:+|nuORF ENST00000507123.1_1_4:8206912-8207257:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2149963378906 2 437.21364 872.412728 NaN NaN NaN NaN NaN NaN NaN 132.53 1 127.67 127.17 128.17 -4.8527 0 0 0 0.21486 1 25457 25457 5.2307 0 1 52770 3341 35110 35131 51639 51639 -0.028581933643749835 VTTEKCALP 9 Unmodified _VTTEKCALP_ 0 0 0 ENST00000487896.2_2_2:86078353-86078431:-|nuORF ENST00000487896.2_2_2:86078353-86078431:-|nuORF ENST00000487896.2_2_2:86078353-86078431:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25360107421875 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 114.17 1 109.62 109.12 110.12 -4.555 0 0 0 0.21848 1 21921 21921 18.135 2.2878 1 52771 10479 35111 35132 51640 51640 0.01319005442917387 VTTELYPPGS 10 Unmodified _VTTELYPPGS_ 0 0 0 REV__ENST00000462315.5_1_3:122278498-122282968:-|nuORF REV__ENST00000462315.5_1_3:122278498-122282968:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2645263671875 2 532.268947 1062.52334 0.32591 0.00017347 0.074003 3.9389E-05 0.39991 0.00021286 532.2688871052551 141.41 0.98434 136.54 136.22 137.2 -4.8678 69 27 4 0 0 0 0.67319 1 27222 27222 13.906 3.0821 1 17350000 + 52772 21902 35112 35133 51641 51641 -0.005419733761300449 VTTEVIAVF 9 Unmodified _VTTEVIAVF_ 0 0 0 ENSG00000140543|ENST00000268148|DET1;nc|ENSG00000173867|Q7L5Y6-2|DET1 ENSG00000140543|ENST00000268148|DET1 ENSG00000140543|ENST00000268148|DET1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2642822265625 2 489.778951 977.543348 -0.082849 -4.0578E-05 0.87907 0.00043055 0.79622 0.00038997 489.77918025048615 129.11 0.487 124.37 124.08 124.57 -4.7408 24 13 2 0 0 0 0.32442 1 24844 24844 2.6312 0 1 1220000 52773 4310 35113 35134 51642 51642 0.05367822354469354 VTTFEKRY 8 Unmodified _VTTFEKRY_ 0 0 0 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2787475585938 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 109.69 1 105.31 104.81 105.81 -4.3776 0 0 0 0.21486 1 21617 21617 11.64 3.7301 1 52774 1309 35114 35135 51643 51643 0.025174564432290936 VTTFGPKA 8 Unmodified _VTTFGPKA_ 0 0 0 ENST00000464373.1_1_1:1693389-1696851:-|nuORF;NADK|p.Q85Rfs*14|1|0.29|ENSG00000008130|chr1:1761962-1761962|G/-|frameshift_variant;ENST00000460602.5_1_1:1688544-1696851:-|nuORF;ENST00000492845.6_1_1:1687687-1696851:-|nuORF;NADK|p.G183Efs*30|1|0.42|ENSG00000008130|chr1:1756295-1756295|C/-|frameshift_variant;ENSG00000008130|ENST00000341426|NADK;nc|ENSG00000008130|O95544-2|NADK ENST00000464373.1_1_1:1693389-1696851:-|nuORF ENST00000464373.1_1_1:1693389-1696851:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 410.731689453125 2 410.731803 819.449054 NaN NaN NaN NaN NaN NaN NaN 43.212 1 40.493 39.993 40.993 -2.7191 0 0 0 0.22847 1 8096 8096 10.074 0 1 52775 1038 35115 35136 51644 51644 0.03210728323006151 VTTFGPKA 8 Unmodified _VTTFGPKA_ 0 0 0 ENST00000464373.1_1_1:1693389-1696851:-|nuORF;NADK|p.Q85Rfs*14|1|0.29|ENSG00000008130|chr1:1761962-1761962|G/-|frameshift_variant;ENST00000460602.5_1_1:1688544-1696851:-|nuORF;ENST00000492845.6_1_1:1687687-1696851:-|nuORF;NADK|p.G183Efs*30|1|0.42|ENSG00000008130|chr1:1756295-1756295|C/-|frameshift_variant;ENSG00000008130|ENST00000341426|NADK;nc|ENSG00000008130|O95544-2|NADK ENST00000464373.1_1_1:1693389-1696851:-|nuORF ENST00000464373.1_1_1:1693389-1696851:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 410.73162841796875 2 410.731803 819.449054 -0.067847 -2.7867E-05 0.25177 0.00010341 0.18392 7.5543E-05 410.73185238377494 43.229 1.657 40.463 39.629 41.286 -2.7661 72 46 2 0 0 0 8448 1 7778 7778 10.074 0 1 1654700 52776 1038 35115 35136 51645 51645 0.03210728323006151 VTTFSNFFD 9 Unmodified _VTTFSNFFD_ 0 0 0 REV__nc|ENSG00000118482|Q92576-2|PHF3 REV__nc|ENSG00000118482|Q92576-2|PHF3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20172119140625 3 359.834435 1076.48148 -0.18171 -6.5387E-05 1.8139 0.00065271 1.6322 0.00058732 360.1699289092742 21.392 0.27783 20.007 19.865 20.143 -1.3847 13 7 3 0 0 0 0.88109 1 3366 3366 4.1895 2.9962 1 440150 + 52777 15554 35116 35137 51646 51646 -0.05370529064657603 VTTGPSWAP 9 Unmodified _VTTGPSWAP_ 0 0 0 REV__ENST00000318967.6_2_1:153746890-153747085:+|nuORF REV__ENST00000318967.6_2_1:153746890-153747085:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23211669921875 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 123.18 1 123.18 122.68 123.68 0 0 0 0 0.22621 1 24278 24278 15.847 0.078963 1 + 52778 20537 35117 35138 51647 51647 -0.01086477027968158 VTTIENLPA 9 Unmodified _VTTIENLPA_ 0 0 0 ENSG00000196376|ENST00000360388|SLC35F1 ENSG00000196376|ENST00000360388|SLC35F1 ENSG00000196376|ENST00000360388|SLC35F1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7439270019531 2 479.266207 956.517862 0.056783 2.7214E-05 1.7946 0.00086007 1.8513 0.00088728 479.2668597301106 53.36 0.42311 50.273 50.005 50.428 -3.0876 16 11 2 0 0 0 0.31673 1 9829 9829 32.786 8.7651 1 607030 52779 7263 35118 35139 51648 51648 0.03786347832044612 VTTIENLPA 9 Unmodified _VTTIENLPA_ 0 0 0 ENSG00000196376|ENST00000360388|SLC35F1 ENSG00000196376|ENST00000360388|SLC35F1 ENSG00000196376|ENST00000360388|SLC35F1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 479.266207 956.517862 -0.063703 -3.0531E-05 1.2389 0.00059376 1.1752 0.00056323 479.26699158656845 53.351 0.54337 50.255 49.934 50.477 -3.0954 -0.0086297 -0.00038153 NaN 32.786 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 888580 52780 7263 35118 35139 0.03786347832044612 VTTKKKKLRK 10 Unmodified _VTTKKKKLRK_ 0 0 0 REV__ENSG00000143858|ENST00000367268|SYT2 REV__ENSG00000143858|ENST00000367268|SYT2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 615.1895751953125 2 615.424439 1228.83433 NaN NaN NaN NaN NaN NaN NaN 166.55 1 161.56 161.06 162.06 -4.9811 0 0 0 2.8426 1 32658 32658 0 0 1 + 52781 16755 35119 35140 51649 51649 0.2290618579020247 VTTLALLLH 9 Unmodified _VTTLALLLH_ 0 0 0 REV__tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1 REV__tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2663879394531 2 490.810585 979.606617 0.13422 6.5878E-05 0.12804 6.2845E-05 0.26227 0.00012872 490.81080593460575 99.365 0.51932 95.232 94.992 95.511 -4.1326 21 14 2 0 0 0 0.84208 1 19475 19475 7.2892 0 1 1642900 + 52782 24911 35120 35141 51650 51650 0.11599807862387479 VTTLLGHES 9 Unmodified _VTTLLGHES_ 0 0 0 REV__GK2|p.F535Lfs*2|1|0.08|ENSG00000196475|chr4:79406596-79406596|A/-|frameshift_variant REV__GK2|p.F535Lfs*2|1|0.08|ENSG00000196475|chr4:79406596-79406596|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7322998046875 2 478.756007 955.497461 0.15927 7.6253E-05 -0.043784 -2.0962E-05 0.11549 5.5291E-05 478.75596289876546 95.017 0.69948 90.826 90.473 91.173 -4.1911 34 19 3 0 0 0 0.48644 1 18064 18064 20.454 1.1966 1 2799100 + 52783 19250 35121 35142 51651 51651 0.01793177172248761 VTTLTVKYQV 10 Unmodified _VTTLTVKYQV_ 0 0 0 PCDH12|p.L685Yfs*7|3|0.18|ENSG00000113555|chr5:141955800-141955800|G/-|frameshift_variant;ENSG00000113555|ENST00000231484|PCDH12 PCDH12|p.L685Yfs*7|3|0.18|ENSG00000113555|chr5:141955800-141955800|G/-|frameshift_variant PCDH12|p.L685Yfs*7|3|0.18|ENSG00000113555|chr5:141955800-141955800|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33935546875 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 162.74 1 157.56 157.06 158.06 -5.1878 0 0 0 0.22588 1 31617 31617 9.3831 1.2276 1 52784 2748 35122 35143 51652 51652 0.09047140854363533 VTTPGNSVPPP 11 Unmodified _VTTPGNSVPPP_ 0 0 0 ENST00000299135.6_1_14:102606435-102676214:+|nuORF;nc|ENSG00000140153|Q8TBZ3-4|WDR20;nc|ENSG00000140153|Q8TBZ3-5|WDR20;nc|ENSG00000140153|Q8TBZ3-6|WDR20;ENSG00000140153|ENST00000342702|WDR20;nc|ENSG00000140153|Q8TBZ3-2|WDR20;nc|ENSG00000140153|Q8TBZ3-7|WDR20 ENST00000299135.6_1_14:102606435-102676214:+|nuORF ENST00000299135.6_1_14:102606435-102676214:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2835083007812 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 47.938 1 47.938 47.438 48.438 0 0 0 0 0.22595 1 9044 9044 11.495 0 1 52785 4283 35123 35144 51653 51653 0.020531352350417365 VTTSVNQLFG 10 Unmodified _VTTSVNQLFG_ 0 0 0 REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant REV__DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2713623046875 2 533.282389 1064.55022 0.23043 0.00012289 -0.12183 -6.4969E-05 0.1086 5.7916E-05 533.2823100455149 89.907 1.4737 86.129 85.484 86.958 -3.7779 122 41 4 0 0 0 0.44698 1 17330 17330 0.26539 0 1 11397000 + 52786 13643 35124 35145 51654 51654 0.020531352350417365 VTTVERLS 8 Unmodified _VTTVERLS_ 0 0 0 ENSG00000248383|ENST00000253807|PCDHAC1;nc|ENSG00000248383|Q9H158-2|PCDHAC1 ENSG00000248383|ENST00000253807|PCDHAC1 ENSG00000248383|ENST00000253807|PCDHAC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 302.1748046875 3 302.174792 903.502546 NaN NaN NaN NaN NaN NaN NaN 65.858 1 65.858 65.358 66.358 0 0 0 0 0.21486 1 12708 12708 0.40072 0 1 52787 7891 35125 35146 51655 51655 0.04693481034871638 VTTVVGSG 8 Unmodified _VTTVVGSG_ 0 0 0 REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20111083984375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 63.057 1 63.057 62.557 63.557 0 0 0 0 0.21486 1 12116 12116 5.2307 0 1 + 52788 13683 35126 35147 51656 51656 0.01566162534970772 VTTVVGSG 8 Unmodified _VTTVVGSG_ 0 0 0 REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20159912109375 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 179.21 1 179.21 178.71 179.71 0 0 0 0 0.21486 1 37123 37123 0.69038 0 1 + 52789 13683 35126 35147 51657 51657 0.01566162534970772 VTTVVGSG 8 Unmodified _VTTVVGSG_ 0 0 0 REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant REV__DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20166015625 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 157.65 1 152.86 152.36 153.36 -4.7885 0 0 0 0.21486 1 31355 31355 2.3027 0 1 + 52790 13683 35126 35147 51658 51658 0.01566162534970772 VTTYQKCI 8 Unmodified _VTTYQKCI_ 0 0 0 tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1 tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1 tr|U7SU24|U7SU24_FUSNUAlanine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=alaSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7333679199219 2 478.249503 954.484453 NaN NaN NaN NaN NaN NaN NaN 77.459 1 73.693 73.193 74.193 -3.7664 0 0 0 0.21323 1 14676 14676 14.582 0 1 52791 26183 35127 35148 51659 51659 0.005390227884959131 VTVALASARHG 11 Unmodified _VTVALASARHG_ 0 0 0 CPB1|p.H16R|1|0.38|ENSG00000153002|chr3:148827870-148827870|A/G|missense_variant CPB1|p.H16R|1|0.38|ENSG00000153002|chr3:148827870-148827870|A/G|missense_variant CPB1|p.H16R|1|0.38|ENSG00000153002|chr3:148827870-148827870|A/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2835693359375 2 541.309272 1080.60399 0.45655 0.00024713 -2.045 -0.001107 -1.5885 -0.00085987 541.3073807833264 152.49 0.3165 147.32 147.09 147.41 -5.1759 10 8 2 0 0 0 0.6353 1 29542 29542 16.149 0.30192 1 1248600 52792 714 35128 35149 51660 51660 0.06691352457414723 VTVFVINVH 9 Unmodified _VTVFVINVH_ 0 0 0 ENSG00000147432|ENST00000289957|CHRNB3 ENSG00000147432|ENST00000289957|CHRNB3 ENSG00000147432|ENST00000289957|CHRNB3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.2011413574219 3 343.202682 1026.58622 NaN NaN NaN NaN NaN NaN NaN 63.17 1 59.913 59.413 60.413 -3.2567 0 0 0 0.23508 1 11855 11855 5.2969 0 1 52793 4701 35129 35150 51661 51661 0.07398637202550162 VTVKTIKKK 9 Unmodified _VTVKTIKKK_ 0 0 0 ENST00000319092.5_1_1:117075690-117076050:-|nuORF;ENST00000528363.5_1_11:2975753-2985939:-|nuORF;ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4 ENST00000319092.5_1_1:117075690-117076050:-|nuORF ENST00000319092.5_1_1:117075690-117076050:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.262451171875 2 522.860609 1043.70667 0.45487 0.00023783 2.0658 0.0010801 2.5207 0.001318 522.8593855014386 119.16 0.14149 114.75 114.66 114.81 -4.4088 5 3 2 0 0 0 0.87888 1 22945 22945 2.0598 0 1 729870 52794 7648 35130 35151 51662 51662 0.18656045196166815 VTVLHLQP 8 Unmodified _VTVLHLQP_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.75750732421875 2 453.774003 905.533452 -0.0037573 -1.7049E-06 0.21619 9.8103E-05 0.21244 9.6398E-05 453.77401924271663 106.17 0.72792 101.79 101.44 102.17 -4.3764 49 20 3 0 0 0 0.17453 1 20325 20325 48.346 3.9388 1 7807300 + 52795 16987 35131 35152 51663 51663 0.076906791397505 VTVLHLQP 8 Unmodified _VTVLHLQP_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 453.774003 905.533452 -0.0037573 -1.7049E-06 0.21619 9.8103E-05 0.21244 9.6398E-05 453.77401924271663 106.17 0.72792 101.79 101.44 102.17 -4.3764 0.026724 -0.00020179 NaN 48.346 49 20 3 NaN NaN NaN NaN 0 NaN NaN 0 7807300 + 52796 16987 35131 35152 0.076906791397505 VTVLIVLLVL 10 Unmodified _VTVLIVLLVL_ 0 0 0 REV__ENSG00000198569|ENST00000673835|SLC34A3 REV__ENSG00000198569|ENST00000673835|SLC34A3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2842407226562 2 541.383386 1080.75222 NaN NaN NaN NaN NaN NaN NaN 91.163 1 87.238 86.738 87.738 -3.9251 0 0 0 0.22588 1 17841 17841 1.6526 0 1 + 52797 19422 35132 35153 51664 51664 0.21507270658548805 VTVLIVLLVL 10 Unmodified _VTVLIVLLVL_ 0 0 0 REV__ENSG00000198569|ENST00000673835|SLC34A3 REV__ENSG00000198569|ENST00000673835|SLC34A3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2708129882812 2 541.383386 1080.75222 0.33958 0.00018384 -0.45239 -0.00024492 -0.11281 -6.1073E-05 541.8840497452879 152.95 0.17877 148.18 148.08 148.26 -4.7684 6 4 2 0 0 0 0.91149 1 30380 30380 0.40072 0 1 640470 + 52798 19422 35132 35153 51665 51665 0.21507270658548805 VTVMRARF 8 Unmodified _VTVMRARF_ 0 0 0 REV__ENST00000474945.1_1_3:52740223-52740484:+|nuORF REV__ENST00000474945.1_1_3:52740223-52740484:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2565002441406 2 490.278929 978.543305 NaN NaN NaN NaN NaN NaN NaN 150.19 1 150.19 149.69 150.69 0 0 0 0 0.21486 1 30070 30070 8.5933 1.304 1 + 52799 22089 35133 35154 51666 51666 0.05317543873491104 VTVMRARF 8 Unmodified _VTVMRARF_ 0 0 0 REV__ENST00000474945.1_1_3:52740223-52740484:+|nuORF REV__ENST00000474945.1_1_3:52740223-52740484:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25933837890625 2 490.278929 978.543305 NaN NaN NaN NaN NaN NaN NaN 158.08 1 152.8 152.3 153.3 -5.2748 0 0 0 0.23312 1 30681 30681 6.2058 2.9245 1 + 52800 22089 35133 35154 51667 51667 0.05317543873491104 VTVNDLRTVY 10 Unmodified _VTVNDLRTVY_ 0 0 0 REV__nc|ENSG00000164078|Q04912-3|MST1R REV__nc|ENSG00000164078|Q04912-3|MST1R MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.24853515625 2 590.322045 1178.62954 NaN NaN NaN NaN NaN NaN NaN 128.91 1 128.91 128.41 129.41 0 0 0 0 0.22588 1 25460 25460 10.074 2.7847 1 + 52801 17645 35134 35155 51668 51668 0.04736782189183941 VTVPIGHPGFR 11 Unmodified _VTVPIGHPGFR_ 0 0 0 REV__ENSG00000170234|ENST00000307063|PWWP2A;REV__nc|ENSG00000170234|Q96N64-2|PWWP2A REV__ENSG00000170234|ENST00000307063|PWWP2A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.261962890625 2 590.33529 1178.65603 NaN NaN NaN NaN NaN NaN NaN 138.62 1 133.67 133.17 134.17 -4.952 0 0 0 0.23087 1 26658 26658 7.609 0.31972 1 + 52802 18148;24161 35135 35156 51669 51669 0.0738451587117197 VTVRVKTPG 9 Unmodified _VTVRVKTPG_ 0 0 0 MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7382507324219 2 478.798009 955.581465 0.24875 0.0001191 -0.088626 -4.2434E-05 0.16012 7.6666E-05 478.79793157893965 45.584 0.4517 45.584 45.378 45.83 0 22 12 2 0 0 0 0.31714 1 8556 8556 30.637 6.616 1 1769000 52803 12194 35136 35157 51670 51670 0.10189753059796658 VTVRVKTPG 9 Unmodified _VTVRVKTPG_ 0 0 0 MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7378234863281 2 478.798009 955.581465 -0.069028 -3.3051E-05 -0.20706 -9.9142E-05 -0.27609 -0.00013219 478.7979270227541 48.229 0.46346 45.36 45.089 45.552 -2.869 20 12 2 0 0 0 0.62921 1 9104 9104 30.637 6.8468 1 1377500 52804 12194 35136 35157 51671 51671 0.10189753059796658 VTVSVGGT 8 Unmodified _VTVSVGGT_ 0 0 0 REV__ENST00000553932.5_1_14:39308043-39308142:-|nuORF REV__ENST00000553932.5_1_14:39308043-39308142:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.1996765136719 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 22.411 1 20.957 20.457 21.457 -1.4535 0 0 0 0.20896 1 3571 3571 18.135 0 1 + 52805 22967 35137 35158 51672 51672 0.015661625349594033 VTVTAYTAGP 10 Unmodified _VTVTAYTAGP_ 0 0 0 nc|ENSG00000185176|A6NM10|AQP12B;ENSG00000184945|ENST00000337801|AQP12A;ENSG00000185176|ENST00000407834|AQP12B nc|ENSG00000185176|A6NM10|AQP12B nc|ENSG00000185176|A6NM10|AQP12B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2586364746094 2 490.258382 978.502212 0.38666 0.00018956 -0.39825 -0.00019524 -0.011588 -5.681E-06 490.2581647370717 41.654 0.41595 41.654 41.412 41.828 0 18 11 2 0 0 0 0.033646 4 7786 7742;7786;7790;7796 58.679 22.552 1 721580 52806 6946 35138 35159 51673;51674;51675;51676 51674 0.012100613149868877 VTVVEDFF 8 Unmodified _VTVVEDFF_ 0 0 0 NOL4L|p.A124T|1|0.31|ENSG00000197183|chr20:32527865-32527865|C/T|missense_variant NOL4L|p.A124T|1|0.31|ENSG00000197183|chr20:32527865-32527865|C/T|missense_variant NOL4L|p.A124T|1|0.31|ENSG00000197183|chr20:32527865-32527865|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72174072265625 2 478.242201 954.469849 0.13633 6.5201E-05 0.80406 0.00038453 0.94039 0.00044973 478.24262055047205 152.8 0.909 147.53 147.08 147.98 -5.2669 58 25 3 0 0 0 0.70613 1 29682 29682 13.508 0 1 8456800 52807 12697 35139 35160 51677 51677 -0.009207260879975365 VTVYRLPRSI 10 Unmodified _VTVYRLPRSI_ 0 0 0 REV__ENSG00000255713|ENST00000545221|OR4D2 REV__ENSG00000255713|ENST00000545221|OR4D2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2830810546875 2 602.364047 1202.71354 NaN NaN NaN NaN NaN NaN NaN 158.74 1 153.47 152.97 153.97 -5.2712 0 0 0 0.22588 1 30800 30800 5.2969 0 1 + 52808 19859 35140 35161 51678 51678 0.12029358076733843 VTWCIKTQ 8 Unmodified _VTWCIKTQ_ 0 0 0 REV__ENSG00000173852|ENST00000638088|DPY19L1 REV__ENSG00000173852|ENST00000638088|DPY19L1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2601318359375 2 489.757495 977.500437 0.37036 0.00018139 1.4695 0.0007197 1.8399 0.00090109 489.7579600134409 100.15 0.84235 95.857 95.417 96.26 -4.297 51 24 3 0 0 0 0.69887 1 19200 19200 14.582 1.0738 1 3636000 + 52809 18378 35141 35162 51679 51679 0.010787290253915671 VTWDVGKP 8 Unmodified _VTWDVGKP_ 0 0 0 REV__ENSG00000157353|ENST00000288078|FCSK REV__ENSG00000157353|ENST00000288078|FCSK MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 301.1648254394531 3 301.164116 900.470518 NaN NaN NaN NaN NaN NaN NaN 92.121 1 88.026 87.526 88.526 -4.0946 0 0 0 0.21486 1 17549 17549 0.40072 0 1 + 52810 17294 35142 35163 51680 51680 0.016301133517231392 VTWFTTWVLLK 11 Unmodified _VTWFTTWVLLK_ 0 0 0 THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|3|1|sense THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|3|1|sense THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|3|1|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24749755859375 3 465.267463 1392.78056 NaN NaN NaN NaN NaN NaN NaN 99.19 1 95.234 94.734 95.734 -3.9564 0 0 0 0.22632 1 19043 19043 0.00056442 0 1 52811 25845 35143 35164 51681 51681 0.09987968567816097 VTWLFTSVL 9 Unmodified _VTWLFTSVL_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5;ENST00000455854.2_1_6:43491608-43492751:-|nuORF ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2850341796875 2 533.302593 1064.59063 NaN NaN NaN NaN NaN NaN NaN 122.88 1 118.15 117.65 118.65 -4.731 0 0 0 0.23508 1 23603 23603 12.532 0 1 52812 3322 35144 35165 51682 51682 0.060921016254724236 VTWLVRDR 8 Unmodified _VTWLVRDR_ 0 0 0 ENST00000551199.1_1_12:50464670-50474246:+|nuORF ENST00000551199.1_1_12:50464670-50474246:+|nuORF ENST00000551199.1_1_12:50464670-50474246:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2737426757812 2 522.801083 1043.58761 -0.45898 -0.00023996 1.5872 0.00082977 1.1282 0.00058981 522.803027208912 162.59 0.13782 157.45 157.37 157.51 -5.1438 5 3 2 0 0 0 1.0191 1 31582 31582 8.5933 3.8373 1 2698400 52813 11181 35145 35166 51683 51683 0.06756271291305893 VTWQVEYPG 9 Unmodified _VTWQVEYPG_ 0 0 0 ENSG00000151952|ENST00000422113|TMEM132D;TMEM132D|p.S1011Afs*35|1|0.47|ENSG00000151952|chr12:129074144-129074144|T/-|frameshift_variant ENSG00000151952|ENST00000422113|TMEM132D ENSG00000151952|ENST00000422113|TMEM132D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2004089355469 3 360.178313 1077.51311 -0.11699 -4.2136E-05 -0.20232 -7.287E-05 -0.3193 -0.00011501 360.1783007071565 22.367 0.67224 20.913 20.661 21.333 -1.4535 37 18 3 0 0 0 0.77797 1 3627 3627 2.7352 0.23671 1 3772600 52814 4897 35146 35167 51684 51684 -0.022545363107155936 VTWTNIEINN 10 Unmodified _VTWTNIEINN_ 0 0 0 REV__tr|U7SFN1|U7SFN1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02312PE=4SV=1 REV__tr|U7SFN1|U7SFN1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02312PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.279052734375 2 602.303852 1202.59315 NaN NaN NaN NaN NaN NaN NaN 163.9 1 158.86 158.36 159.36 -5.0446 0 0 0 2.8426 1 31922 31922 0.063865 0.032455 1 + 52815 24851 35147 35168 51685 51685 -4.094707514923357E-05 VTYIAPPGNY 10 Unmodified _VTYIAPPGNY_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7820434570312 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 141.18 1 136.19 135.69 136.69 -4.9877 0 0 0 2.8426 1 27184 27184 0.84494 0.43668 1 52816 2799 35148 35169 51686 51686 0.0013803672338781325 VTYQEQPP 8 Unmodified _VTYQEQPP_ 0 0 0 nc|ENSG00000118492|Q8N7X0-2|ADGB;ADGB|p.K1379Rfs*12|1|0.29|ENSG00000118492|chr6:146784714-146784714|A/-|frameshift_variant;ENSG00000118492|ENST00000397944|ADGB nc|ENSG00000118492|Q8N7X0-2|ADGB nc|ENSG00000118492|Q8N7X0-2|ADGB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.234619140625 2 481.234907 960.455261 NaN NaN NaN NaN NaN NaN NaN 158.02 1 158.02 157.52 158.52 0 0 0 0 0.21486 1 31727 31727 9.3474 0.75416 1 52817 72 35149 35170 51687 51687 -0.02654798236130773 VTYTRVSPG 9 Unmodified _VTYTRVSPG_ 0 0 0 ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2645263671875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 91.988 1 88.18 87.68 88.68 -3.8083 0 0 0 0.14843 1 17619 17619 30.637 0 1 52818 5816 35150 35171 51688 51688 0.02332883409144415 VTYVRVPAG 9 Unmodified _VTYVRVPAG_ 0 0 0 REV__ENST00000527586.1_1_11:134109936-134113358:+|nuORF REV__ENST00000527586.1_1_11:134109936-134113358:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.77850341796875 2 481.276909 960.539266 0.45092 0.00021702 -0.21099 -0.00010155 0.23993 0.00011547 481.2767484468529 115.32 0.59947 111.01 110.66 111.26 -4.3135 38 16 3 0 0 0 0.17664 1 22249 22249 0.96228 0 1 4145600 + 52819 22711 35151 35172 51689 51689 0.057417776514284924 VVAAPSAP 8 Unmodified _VVAAPSAP_ 0 0 0 REV__ENST00000509664.5_1_4:48833051-48833276:+|nuORF REV__ENST00000509664.5_1_4:48833051-48833276:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 713.3800048828125 1 711.403566 710.39629 0.11459 8.1518E-05 0.31006 0.00022058 0.42465 0.0003021 711.4037506756947 65.075 1.0769 65.075 64.751 65.828 0 63 30 3 0 0 0 0.45067 1 12522 12522 30.225 0 1 22733000 + 52820 22530 35152 35173 51690 51690 0.029507702601790697 VVAAPSAP 8 Unmodified _VVAAPSAP_ 0 0 0 REV__ENST00000509664.5_1_4:48833051-48833276:+|nuORF REV__ENST00000509664.5_1_4:48833051-48833276:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 711.403566 710.39629 0.11459 8.1518E-05 0.31006 0.00022058 0.42465 0.0003021 711.4037506756947 65.075 1.0769 65.075 64.751 65.828 0 0.11393 0.00032272 NaN 30.225 63 30 3 NaN NaN NaN NaN 0 NaN NaN 0 22733000 + 52821 22530 35152 35173 0.029507702601790697 VVAAPSAP 8 Unmodified _VVAAPSAP_ 0 0 0 REV__ENST00000509664.5_1_4:48833051-48833276:+|nuORF REV__ENST00000509664.5_1_4:48833051-48833276:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 711.403566 710.39629 0.67545 0.00048051 -0.48412 -0.00034441 0.19132 0.00013611 711.4032678491596 68.04 0.99739 64.932 64.626 65.624 -3.1086 -0.029822 -0.00024227 NaN 30.225 58 28 3 NaN NaN NaN NaN 0 NaN NaN 0 17874000 + 52822 22530 35152 35173 0.029507702601790697 VVAAPSAP 8 Unmodified _VVAAPSAP_ 0 0 0 REV__ENST00000509664.5_1_4:48833051-48833276:+|nuORF REV__ENST00000509664.5_1_4:48833051-48833276:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 711.403566 710.39629 0.56964 0.00040524 -0.27251 -0.00019386 0.29713 0.00021138 711.4033372771042 68.42 1.0356 64.883 64.691 65.726 -3.5362 -0.078034 -9.1726E-05 NaN 30.225 48 28 2 NaN NaN NaN NaN 0 NaN NaN 0 14137000 + 52823 22530 35152 35173 0.029507702601790697 VVAAPSAP 8 Unmodified _VVAAPSAP_ 0 0 0 REV__ENST00000509664.5_1_4:48833051-48833276:+|nuORF REV__ENST00000509664.5_1_4:48833051-48833276:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1 711.403566 710.39629 0.5407 0.00038466 -0.096414 -6.8589E-05 0.44429 0.00031607 711.4034297796253 68.346 1.1745 64.955 64.669 65.844 -3.3903 -0.0060798 3.3547E-05 NaN 30.225 73 33 3 NaN NaN NaN NaN 0 NaN NaN 0 14025000 + 52824 22530 35152 35173 0.029507702601790697 VVALLGLIKLL 11 Unmodified _VVALLGLIKLL_ 0 0 0 REV__ENSG00000094963|ENST00000209929|FMO2 REV__ENSG00000094963|ENST00000209929|FMO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3295288085938 2 576.409935 1150.80532 NaN NaN NaN NaN NaN NaN NaN 110.67 1 106.44 105.94 106.94 -4.2289 0 0 0 0.22632 1 21297 21297 0 0 1 + 52825 14599 35153 35174 51691 51691 0.23594648441235222 VVAPIPLLL 9 Unmodified _VVAPIPLLL_ 0 0 0 REV__OR2AT4|p.Q200Rfs*37|1|0.2|ENSG00000171561|chr11:75089116-75089116|G/-|frameshift_variant REV__OR2AT4|p.Q200Rfs*37|1|0.2|ENSG00000171561|chr11:75089116-75089116|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.21673583984375 3 312.21604 933.62629 NaN NaN NaN NaN NaN NaN NaN 59.153 1 59.153 58.653 59.653 0 0 0 0 0.23508 1 11331 11331 0 0 1 + 52826 18234 35154 35175 51692 51692 0.1568218387315028 VVARKDEY 8 Unmodified _VVARKDEY_ 0 0 0 REV__nc|ENSG00000104218|Q1MSJ5-1|CSPP1 REV__nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2645568847656 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 51.878 1 48.833 48.333 49.333 -3.0453 0 0 0 0.19954 1 9534 9534 24.674 2.9272 1 + 52827 14910 35155 35176 51693 51693 0.023328834091330464 VVARKGSSL 9 Unmodified _VVARKGSSL_ 0 0 0 REV__ENST00000475678.5_1_2:219130391-219130901:-|nuORF REV__ENST00000475678.5_1_2:219130391-219130901:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.1335144042969 3 306.190665 915.550165 NaN NaN NaN NaN NaN NaN NaN 92.505 1 88.697 88.197 89.197 -3.8083 0 0 0 0.23508 1 17726 17726 2.7352 0 1 + 52828 22097 35156 35177 51694 51694 0.08901180025713984 VVARKGSSL 9 Unmodified _VVARKGSSL_ 0 0 0 REV__ENST00000475678.5_1_2:219130391-219130901:-|nuORF REV__ENST00000475678.5_1_2:219130391-219130901:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.1913757324219 3 306.190665 915.550165 NaN NaN NaN NaN NaN NaN NaN 113.02 1 108.75 108.25 109.25 -4.2725 0 0 0 0.23508 1 21765 21765 2.7352 0 1 + 52829 22097 35156 35177 51695 51695 0.08901180025713984 VVARKGSSL 9 Unmodified _VVARKGSSL_ 0 0 0 REV__ENST00000475678.5_1_2:219130391-219130901:-|nuORF REV__ENST00000475678.5_1_2:219130391-219130901:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.19146728515625 3 306.190665 915.550165 NaN NaN NaN NaN NaN NaN NaN 114.32 1 110.01 109.51 110.51 -4.3136 0 0 0 0.23508 1 22022 22022 2.7352 0 1 + 52830 22097 35156 35177 51696 51696 0.08901180025713984 VVARKGSSL 9 Unmodified _VVARKGSSL_ 0 0 0 REV__ENST00000475678.5_1_2:219130391-219130901:-|nuORF REV__ENST00000475678.5_1_2:219130391-219130901:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 306.2068786621094 3 306.190665 915.550165 NaN NaN NaN NaN NaN NaN NaN 132.46 1 127.66 127.16 128.16 -4.799 0 0 0 0.23508 1 25498 25498 2.7352 0 1 + 52831 22097 35156 35177 51697 51697 0.08901180025713984 VVASIAST 8 Unmodified _VVASIAST_ 0 0 0 HERC2|p.A1107V|1|0.19|ENSG00000128731|chr15:28246813-28246813|G/A|missense_variant HERC2|p.A1107V|1|0.19|ENSG00000128731|chr15:28246813-28246813|G/A|missense_variant HERC2|p.A1107V|1|0.19|ENSG00000128731|chr15:28246813-28246813|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 374.5075988769531 2 374.215986 746.417419 NaN NaN NaN NaN NaN NaN NaN 93.566 1 89.423 88.923 89.923 -4.1435 0 0 0 0.2396 1 17837 17837 0.30703 0 1 52832 11876 35157 35178 51698 51698 0.03406735569058128 VVASNIMEV 9 Unmodified _VVASNIMEV_ 0 0 0 nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3 nc|ENSG00000170525|Q16875-3|PFKFB3 nc|ENSG00000170525|Q16875-3|PFKFB3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24493408203125 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 118.15 1 113.74 113.24 114.24 -4.4088 0 0 0 0.19687 1 22736 22736 8.1555 7.5287 1 52833 6078 35158 35179 51699 51699 0.013190054429287557 VVAVKLTSV 9 Unmodified _VVAVKLTSV_ 0 0 0 ENST00000577454.5_1_17:38285914-38285977:+|nuORF ENST00000577454.5_1_17:38285914-38285977:+|nuORF ENST00000577454.5_1_17:38285914-38285977:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2386779785156 2 458.29731 914.580068 NaN NaN NaN NaN NaN NaN NaN 65.028 1 65.028 64.528 65.528 0 0 0 0 0.23508 1 12528 12528 9.3474 4.1168 1 52834 11468 35159 35180 51700 51700 0.11936118971050291 VVAYGRSPM 9 Unmodified _VVAYGRSPM_ 0 0 0 ENSG00000196781|ENST00000376499|TLE1 ENSG00000196781|ENST00000376499|TLE1 ENSG00000196781|ENST00000376499|TLE1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2557067871094 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 123.58 1 118.99 118.49 119.49 -4.5926 0 0 0 0.22621 1 23788 23788 15.847 1.2655 1 52835 7308 35160 35181 51701 51701 0.005578448826327076 VVCENSNDSN 10 Unmodified _VVCENSNDSN_ 0 0 0 REV__nc|ENSG00000102858|O60291-4|MGRN1 REV__nc|ENSG00000102858|O60291-4|MGRN1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21331787109375 3 360.813594 1079.41895 -0.04761 -1.7178E-05 -1.8691 -0.0006744 -1.9167 -0.00069158 361.1469319371456 50.26 0.10055 50.26 50.2 50.3 0 4 2 2 0 0 0 1.133 1 9521 9521 0.0013812 0 1 330490 + 52836 23981 35161 35182 51702 51702 -0.11758043195163737 VVDAQDSPEGY 11 Unmodified _VVDAQDSPEGY_ 0 0 0 REV__nc|ENSG00000119471|Q6YN16-2|HSDL2 REV__nc|ENSG00000119471|Q6YN16-2|HSDL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.26220703125 2 590.26185 1178.50915 NaN NaN NaN NaN NaN NaN NaN 150.95 1 145.77 145.27 146.27 -5.1759 0 0 0 0.22632 1 29260 29260 0.11104 0 1 + 52837 15580 35162 35183 51703 51703 -0.07296670595087562 VVDEHTGQY 9 Unmodified _VVDEHTGQY_ 0 0 0 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6962280273438 2 524.240721 1046.46689 0.19518 0.00010232 -0.10909 -5.7191E-05 0.086086 4.513E-05 524.2406450114154 22.943 0.80298 22.943 22.643 23.446 0 37 22 2 0 0 0 2.8988000000000002E-24 1 3893 3893 176.84 136.88 1 23712000 52838 3934 35163 35184 51704 51704 -0.054486012128108996 VVDEHTGQY 9 Unmodified _VVDEHTGQY_ 0 0 0 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6839599609375 2 524.240721 1046.46689 0.8434 0.00044215 -0.85435 -0.00044788 -0.010942 -5.736E-06 524.2402464512712 24.558 0.65431 22.909 22.649 23.303 -1.6482 49 18 4 0 0 0 2.8988000000000002E-24 1 4264 4264 176.84 136.88 1 24239000 52839 3934 35163 35184 51705 51705 -0.054486012128108996 VVDEHTGQY 9 Unmodified _VVDEHTGQY_ 0 0 0 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6966552734375 2 524.240721 1046.46689 -0.47298 -0.00024796 0.50097 0.00026263 0.027991 1.4674E-05 524.2409924573745 24.47 0.58561 22.936 22.679 23.265 -1.5342 44 16 4 0 0 0 0.036636 1 3957 3957 88.954 60.467 1 24978000 52840 3934 35163 35184 51706 51706 -0.054486012128108996 VVDEHTGQY 9 Unmodified _VVDEHTGQY_ 0 0 0 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.696533203125 2 524.240721 1046.46689 -0.17915 -9.3918E-05 0.13203 6.9213E-05 -0.047126 -2.4705E-05 524.2407686852619 24.718 0.68452 22.865 22.572 23.256 -1.8534 54 19 4 0 0 0 0.00090544 1 4006 4006 142.08 142.08 1 22032000 52841 3934 35163 35184 51707 51707 -0.054486012128108996 VVDIQGVGDLY 11 Unmodified _VVDIQGVGDLY_ 0 0 0 ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2542114257812 2 589.308603 1176.60265 0.3677 0.00021669 -0.066894 -3.9421E-05 0.3008 0.00017727 589.3085539312667 150.92 0.73798 145.74 145.29 146.03 -5.1759 42 20 3 0 0 0 0.42077 2 29242 29242;29282 27.223 13.608 1 5352200 52842 2182 35164 35185 51708;51709 51708 0.0214167357801216 VVDIQGVGDLY 11 Unmodified _VVDIQGVGDLY_ 0 0 0 ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 589.308603 1176.60265 0.34789 0.00020502 -0.047161 -2.7792E-05 0.30073 0.00017722 589.3087413309458 145.49 0.66846 145.49 145.13 145.8 0 -0.19073 9.7437E-05 NaN 27.223 39 18 4 NaN NaN NaN NaN 0 NaN NaN 0 5222200 52843 2182 35164 35185 0.0214167357801216 VVDIQGVGDLY 11 Unmodified _VVDIQGVGDLY_ 0 0 0 ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 589.308603 1176.60265 0.53317 0.0003142 -0.1454 -8.5685E-05 0.38777 0.00022852 589.308460488249 150.45 0.67218 145.72 145.36 146.03 -4.7323 0.03751 -1.8349E-05 NaN 27.223 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 8501800 52844 2182 35164 35185 0.0214167357801216 VVDIQGVGDLY 11 Unmodified _VVDIQGVGDLY_ 0 0 0 ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.308603 1176.60265 0.53712 0.00031653 -0.21924 -0.0001292 0.31787 0.00018733 589.3084963110089 151.02 0.80853 145.78 145.3 146.11 -5.2365 0.096656 -0.00010538 NaN 27.223 47 22 3 NaN NaN NaN NaN 0 NaN NaN 0 5893700 52845 2182 35164 35185 0.0214167357801216 VVDKHTIE 8 Unmodified _VVDKHTIE_ 0 0 0 REV__nc|ENSG00000024048|Q8IWV8-3|UBR2 REV__nc|ENSG00000024048|Q8IWV8-3|UBR2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 314.1818542480469 3 314.174792 939.502546 NaN NaN NaN NaN NaN NaN NaN 95.079 1 91.03 90.53 91.53 -4.0496 0 0 0 0.21486 1 18634 18634 3.5965 0 1 + 52846 13997 35165 35186 51710 51710 0.03037481034857592 VVDTPGILD 9 Unmodified _VVDTPGILD_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24481201171875 2 464.752933 927.491313 0.53119 0.00024687 -0.19884 -9.2413E-05 0.33234 0.00015446 464.75287109691175 121.65 0.84734 116.96 116.39 117.23 -4.6873 48 23 4 0 0 0 0.36931 2 23284 23284;23297 23.148 4.6271 1 4379800 52847 2449 35166 35187 51711;51712 51711 0.024666589407161155 VVEGKLRK 8 Unmodified _VVEGKLRK_ 0 0 0 nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B nc|ENSG00000226266|Q9UIF8-4|BAZ2B nc|ENSG00000226266|Q9UIF8-4|BAZ2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 53.521 1 53.521 53.021 54.021 0 0 0 0 0.2386 1 10194 10194 0.0082765 0 1 52848 3278 35167 35188 51713 51713 0.11986056922410171 VVEGKLRK 8 Unmodified _VVEGKLRK_ 0 0 0 nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B nc|ENSG00000226266|Q9UIF8-4|BAZ2B nc|ENSG00000226266|Q9UIF8-4|BAZ2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698303222656 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 55.032 1 55.032 54.532 55.532 0 0 0 0 0.2386 1 10498 10498 0.0082765 0 1 52849 3278 35167 35188 51714 51714 0.11986056922410171 VVEGKLRK 8 Unmodified _VVEGKLRK_ 0 0 0 nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B nc|ENSG00000226266|Q9UIF8-4|BAZ2B nc|ENSG00000226266|Q9UIF8-4|BAZ2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.164794921875 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 134.12 1 134.12 133.62 134.62 0 0 0 0 0.2386 1 26544 26544 0.0082765 0 1 52850 3278 35167 35188 51715 51715 0.11986056922410171 VVEHYTKLEYL 11 Unmodified _VVEHYTKLEYL_ 0 0 0 REV__PRPF38B|p.R352Lfs*11|1|0.04|ENSG00000134186|chr1:108699431-108699432|-/TCTT|frameshift_variant REV__PRPF38B|p.R352Lfs*11|1|0.04|ENSG00000134186|chr1:108699431-108699432|-/TCTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2503967285156 3 465.250249 1392.72892 NaN NaN NaN NaN NaN NaN NaN 107.89 1 107.89 107.39 108.39 0 0 0 0 0.22632 1 21215 21215 0.026206 0 1 + 52851 16196 35168 35189 51716 51716 0.04826180083273357 VVEHYTKLEYL 11 Unmodified _VVEHYTKLEYL_ 0 0 0 REV__PRPF38B|p.R352Lfs*11|1|0.04|ENSG00000134186|chr1:108699431-108699432|-/TCTT|frameshift_variant REV__PRPF38B|p.R352Lfs*11|1|0.04|ENSG00000134186|chr1:108699431-108699432|-/TCTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2520751953125 3 465.250249 1392.72892 NaN NaN NaN NaN NaN NaN NaN 121.08 1 116.53 116.03 117.03 -4.5476 0 0 0 0.22632 1 23869 23869 0.03141 0 1 + 52852 16196 35168 35189 51717 51717 0.04826180083273357 VVEHYTKLEYL 11 Unmodified _VVEHYTKLEYL_ 0 0 0 REV__PRPF38B|p.R352Lfs*11|1|0.04|ENSG00000134186|chr1:108699431-108699432|-/TCTT|frameshift_variant REV__PRPF38B|p.R352Lfs*11|1|0.04|ENSG00000134186|chr1:108699431-108699432|-/TCTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2491149902344 3 465.250249 1392.72892 NaN NaN NaN NaN NaN NaN NaN 173.64 1 168.75 168.25 169.25 -4.8977 0 0 0 0.22632 1 34485 34485 0.026206 0 1 + 52853 16196 35168 35189 51718 51718 0.04826180083273357 VVEHYTKLEYL 11 Unmodified _VVEHYTKLEYL_ 0 0 0 REV__PRPF38B|p.R352Lfs*11|1|0.04|ENSG00000134186|chr1:108699431-108699432|-/TCTT|frameshift_variant REV__PRPF38B|p.R352Lfs*11|1|0.04|ENSG00000134186|chr1:108699431-108699432|-/TCTT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2492980957031 3 465.250249 1392.72892 NaN NaN NaN NaN NaN NaN NaN 127.34 1 122.64 122.14 123.14 -4.6998 0 0 0 0.22632 1 24493 24493 0.026206 0 1 + 52854 16196 35168 35189 51719 51719 0.04826180083273357 VVEKAKRV 8 Unmodified _VVEKAKRV_ 0 0 0 tr|U7SKW9|U7SKW9_FUSNUGlucose-1-phosphatethymidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01960PE=3SV=1 tr|U7SKW9|U7SKW9_FUSNUGlucose-1-phosphatethymidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01960PE=3SV=1 tr|U7SKW9|U7SKW9_FUSNUGlucose-1-phosphatethymidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01960PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651916503906 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 14.528 1 14.528 14.028 15.028 0 0 0 0 0.21486 1 2168 2168 1.6526 0 1 52855 25971 35169 35190 51720 51720 0.1198605692242154 VVEKYFSG 8 Unmodified _VVEKYFSG_ 0 0 0 UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant;ENST00000466379.1_1_1:10189503-10195243:+|nuORF;nc|ENSG00000130939|O95155-3|UBE4B;UBE4B|p.L1117Ffs*8|1|0.36|ENSG00000130939|chr1:10171152-10171153|-/T|frameshift_variant;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700134277344 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 95.12 1 95.12 94.62 95.62 0 0 0 0 0.21486 1 18631 18631 1.4819 0 1 52856 26545 35170 35191 51721 51721 0.003546936318684857 VVEKYFSG 8 Unmodified _VVEKYFSG_ 0 0 0 UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant;ENST00000466379.1_1_1:10189503-10195243:+|nuORF;nc|ENSG00000130939|O95155-3|UBE4B;UBE4B|p.L1117Ffs*8|1|0.36|ENSG00000130939|chr1:10171152-10171153|-/T|frameshift_variant;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 97.581 1 97.581 97.081 98.081 0 0 0 0 0.21486 1 19125 19125 1.4819 0 1 52857 26545 35170 35191 51722 51722 0.003546936318684857 VVELEPKD 8 Unmodified _VVELEPKD_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1695861816406 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 5.0236 1 4.0148 3.5148 4.5148 -1.0089 0 0 0 0.21486 1 173 173 0.40072 0 1 + 52858 15903 35171 35192 51723 51723 0.024666589407047468 VVELEPKD 8 Unmodified _VVELEPKD_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16961669921875 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 5.2362 1 4.2274 3.7274 4.7274 -1.0089 0 0 0 0.21486 1 209 209 0.40072 0 1 + 52859 15903 35171 35192 51724 51724 0.024666589407047468 VVELEPKD 8 Unmodified _VVELEPKD_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1695556640625 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 5.7417 1 4.7328 4.2328 5.2328 -1.0089 0 0 0 0.21486 1 295 295 0.40072 0 1 + 52860 15903 35171 35192 51725 51725 0.024666589407047468 VVELEPKD 8 Unmodified _VVELEPKD_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1695861816406 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 6.1738 1 5.165 4.665 5.665 -1.0089 0 0 0 0.21486 1 368 368 0.40072 0 1 + 52861 15903 35171 35192 51726 51726 0.024666589407047468 VVELEPKD 8 Unmodified _VVELEPKD_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1698913574219 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 6.373 1 5.3634 4.8634 5.8634 -1.0097 0 0 0 0.21486 1 403 403 0.40072 0 1 + 52862 15903 35171 35192 51727 51727 0.024666589407047468 VVELEPKD 8 Unmodified _VVELEPKD_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16961669921875 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 6.5989 1 5.5841 5.0841 6.0841 -1.0148 0 0 0 0.21486 1 440 440 1.6526 0 1 + 52863 15903 35171 35192 51728 51728 0.024666589407047468 VVELEPKD 8 Unmodified _VVELEPKD_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1698303222656 3 310.171047 927.491313 NaN NaN NaN NaN NaN NaN NaN 6.8031 1 5.7883 5.2883 6.2883 -1.0148 0 0 0 0.21486 1 486 486 0.40072 0 1 + 52864 15903 35171 35192 51729 51729 0.024666589407047468 VVELKRLA 8 Unmodified _VVELKRLA_ 0 0 0 REV__LRRC14B|p.T256Pfs*36|2|0.23|ENSG00000185028|chr5:192298-192298|C/-|frameshift_variant REV__LRRC14B|p.T256Pfs*36|2|0.23|ENSG00000185028|chr5:192298-192298|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649169921875 3 309.871044 926.591301 0.1958 6.0674E-05 -2.0175 -0.00062516 -1.8217 -0.00056448 309.86966428208376 179.15 0.44189 174.28 173.91 174.36 -4.868 15 12 2 0 0 0 0.89879 1 35632 35632 0.0082765 0 1 1093600 + 52865 18931 35172 35193 51730 51730 0.1250694106516903 VVEQLLPM 8 Unmodified _VVEQLLPM_ 0 0 0 FCGBP|p.T245M|1|0.22|ENSG00000275395|chr19:39927628-39927628|G/A|missense_variant FCGBP|p.T245M|1|0.22|ENSG00000275395|chr19:39927628-39927628|G/A|missense_variant FCGBP|p.T245M|1|0.22|ENSG00000275395|chr19:39927628-39927628|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.17279052734375 3 310.177256 927.50994 NaN NaN NaN NaN NaN NaN NaN 177.49 1 172.58 172.08 173.08 -4.9088 0 0 0 0.21486 1 35397 35397 1.6526 0 1 52866 11811 35173 35194 51731 51731 0.04328497310939383 VVESSNDKLAA 11 Unmodified _VVESSNDKLAA_ 0 0 0 REV__MON2|p.E62D|1|0.33|ENSG00000061987|chr12:62493925-62493925|G/T|missense_variant REV__MON2|p.E62D|1|0.33|ENSG00000061987|chr12:62493925-62493925|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 566.7960205078125 2 566.79586 1131.57717 NaN NaN NaN NaN NaN NaN NaN 8.3575 1 7.6784 7.1784 8.1784 -0.67913 0 0 0 0.23698 1 859 859 0 0 1 + 52867 23873 35174 35195 51732 51732 0.01664199055608151 VVESWRRHLLV 11 Unmodified _VVESWRRHLLV_ 0 0 0 REV__GIMAP1|p.A299V|1|0.32|ENSG00000213203|chr7:150720900-150720900|C/T|missense_variant REV__GIMAP1|p.A299V|1|0.32|ENSG00000213203|chr7:150720900-150720900|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2530212402344 3 465.273611 1392.799 NaN NaN NaN NaN NaN NaN NaN 83.614 1 83.614 83.114 84.114 0 0 0 0 0.22632 1 16302 16302 0.50596 0 1 + 52868 23574 35175 35196 51733 51733 0.11831523262412702 VVEVTATTIY 10 Unmodified _VVEVTATTIY_ 0 0 0 REV__tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1 REV__tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7740478515625 2 548.300247 1094.58594 0.51885 0.00028449 -0.4496 -0.00024652 0.069253 3.7971E-05 548.2999240919021 122.86 0.69798 118.13 117.8 118.5 -4.731 44 19 3 0 0 0 0.2412 1 23590 23590 54.774 0.94076 1 6279100 + 52869 25095 35176 35197 51734 51734 0.04243172692076769 VVFCGELFCY 10 Unmodified _VVFCGELFCY_ 0 0 0 ENST00000579188.1_1_17:80358582-80358996:-|nuORF ENST00000579188.1_1_17:80358582-80358996:-|nuORF ENST00000579188.1_1_17:80358582-80358996:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.26416015625 2 590.264296 1178.51404 NaN NaN NaN NaN NaN NaN NaN 150.3 1 145.56 145.06 146.06 -4.7323 0 0 0 2.8426 1 29849 29849 0.063865 0.032455 1 52870 11481 35177 35198 51735 51735 -0.06807781257657552 VVFEIQGTTV 10 Unmodified _VVFEIQGTTV_ 0 0 0 RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENSG00000164292|ENST00000379982|RHOBTB3 RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.770751953125 2 546.800414 1091.58628 0.14315 7.8274E-05 0.20678 0.00011307 0.34993 0.00019134 546.8007423364909 147.78 0.74443 142.63 142.34 143.08 -5.1557 40 20 3 0 0 0 0.65405 1 28592 28592 15.847 3.3156 1 4085600 52871 5528 35178 35199 51736 51736 0.04414592411899321 VVFEIQGTTV 10 Unmodified _VVFEIQGTTV_ 0 0 0 RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENSG00000164292|ENST00000379982|RHOBTB3 RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 546.800414 1091.58628 0.28545 0.00015609 -0.86172 -0.00047119 -0.57626 -0.0003151 546.8000402741392 147.32 0.72725 142.63 142.23 142.95 -4.6868 0.0060496 -9.5809E-06 NaN 15.847 33 20 2 NaN NaN NaN NaN 0 NaN NaN 0 4465100 52872 5528 35178 35199 0.04414592411899321 VVFEIQGTTV 10 Unmodified _VVFEIQGTTV_ 0 0 0 RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENSG00000164292|ENST00000379982|RHOBTB3 RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 546.800414 1091.58628 0.40812 0.00022316 -1.6382 -0.00089576 -1.2301 -0.00067261 546.8001494221224 147.68 0.65915 142.62 142.32 142.98 -5.0595 -0.0082508 -0.00085874 NaN 15.847 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2959700 52873 5528 35178 35199 0.04414592411899321 VVFLSKII 8 Unmodified _VVFLSKII_ 0 0 0 ENST00000304979.7_1_1:43142268-43142340:+|nuORF ENST00000304979.7_1_1:43142268-43142340:+|nuORF ENST00000304979.7_1_1:43142268-43142340:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2337951660156 2 459.804771 917.59499 NaN NaN NaN NaN NaN NaN NaN 57.049 1 53.859 53.359 54.359 -3.1895 0 0 0 0.2396 1 10584 10584 0.12286 0 1 52874 8595 35179 35200 51737 51737 0.13289610839046873 VVFVVKLLG 9 Unmodified _VVFVVKLLG_ 0 0 0 REV__FAM3B|p.K206Rfs*21|1|0.21|ENSG00000183844|chr21:41348720-41348720|A/-|frameshift_variant REV__FAM3B|p.K206Rfs*21|1|0.21|ENSG00000183844|chr21:41348720-41348720|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.2203369140625 3 325.219673 972.637189 NaN NaN NaN NaN NaN NaN NaN 143.49 1 138.84 138.34 139.34 -4.656 0 0 0 0.23508 1 28382 28382 0.26902 0 1 + 52875 23516 35180 35201 51738 51738 0.14977586247425734 VVGDKTKVTLE 11 Unmodified _VVGDKTKVTLE_ 0 0 0 REV__ENSG00000106211|ENST00000248553|HSPB1 REV__ENSG00000106211|ENST00000248553|HSPB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 396.9088439941406 3 396.899328 1187.67615 NaN NaN NaN NaN NaN NaN NaN 9.6061 1 8.5416 8.0416 9.0416 -1.0645 0 0 0 0.23698 1 1036 1036 0 0 1 + 52876 15035 35181 35202 51739 51739 0.08982222020495101 VVGYEKGDQV 10 Unmodified _VVGYEKGDQV_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000016285 REV__CON__ENSEMBL:ENSBTAP00000016285 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7825317382812 2 547.279846 1092.54514 0.87136 0.00047688 -1.0981 -0.00060099 -0.22678 -0.00012411 547.2795024345468 29.078 0.45982 27.122 26.878 27.338 -1.9561 24 12 3 0 0 0 0.52788 1 5196 5196 0.26539 0.23398 1 1026400 + + 52877 13506 35182 35203 51740 51740 0.002568313724395921 VVHAHSKPYN 10 Unmodified _VVHAHSKPYN_ 0 0 0 ZNF143|p.T412A|1|0.25|ENSG00000166478|chr11:9508705-9508705|A/G|missense_variant ZNF143|p.T412A|1|0.25|ENSG00000166478|chr11:9508705-9508705|A/G|missense_variant ZNF143|p.T412A|1|0.25|ENSG00000166478|chr11:9508705-9508705|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3358154296875 2 576.301447 1150.58834 NaN NaN NaN NaN NaN NaN NaN 136.53 1 131.89 131.39 132.39 -4.6399 0 0 0 0.22588 1 26940 26940 6.7232 1.4263 1 52878 26604 35183 35204 51741 51741 0.019070659403723766 VVHFGSGHT 9 Unmodified _VVHFGSGHT_ 0 0 0 REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 314.1903381347656 3 314.159365 939.456264 NaN NaN NaN NaN NaN NaN NaN 35.345 1 35.345 34.845 35.845 0 0 0 0 0.23508 1 6486 6486 1.0715 0 1 + 52879 13704 35184 35205 51742 51742 -0.015885390765674856 VVHKIKQKL 9 Unmodified _VVHKIKQKL_ 0 0 0 REV__nc|ENSG00000072571|O75330-4|HMMR REV__nc|ENSG00000072571|O75330-4|HMMR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 546.8583374023438 2 546.866226 1091.7179 NaN NaN NaN NaN NaN NaN NaN 10.68 1 9.6138 9.1138 10.114 -1.0664 0 0 0 0.23508 1 1171 1171 0 0 1 + 52880 14288 35185 35206 51743 51743 0.1757086729032835 VVHKLLIV 8 Unmodified _VVHKLLIV_ 0 0 0 REV__nc|ENSG00000211448|Q92813-2|DIO2 REV__nc|ENSG00000211448|Q92813-2|DIO2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.16912841796875 2 460.818213 919.621873 NaN NaN NaN NaN NaN NaN NaN 8.6481 1 8.6481 8.1481 9.1481 0 0 0 0 0.21486 1 926 926 0 0 1 + 52881 19627 35186 35207 51744 51744 0.1588471945024139 VVHLKKLIE 9 Unmodified _VVHLKKLIE_ 0 0 0 TEX15|p.A1007Lfs*12|3|0.21|ENSG00000133863|chr8:30846000-30846000|T/-|frameshift_variant TEX15|p.A1007Lfs*12|3|0.21|ENSG00000133863|chr8:30846000-30846000|T/-|frameshift_variant TEX15|p.A1007Lfs*12|3|0.21|ENSG00000133863|chr8:30846000-30846000|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21331787109375 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 134.38 1 129.74 129.24 130.24 -4.6399 0 0 0 0.19622 1 26500 26500 0.96228 0.96089 1 52882 25835 35187 35208 51745 51745 0.15527758679127146 VVHMFLWYLIY 11 Unmodified _VVHMFLWYLIY_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.L1167Sfs*9|1|0.07|ENSG00000077235|chr16:27488566-27488566|G/-|frameshift_variant;GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant;GTF3C1|p.V2028Sfs*25|1|0.14|ENSG00000077235|chr16:27462329-27462329|C/-|frameshift_variant nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3943481445312 2 742.393959 1482.77336 NaN NaN NaN NaN NaN NaN NaN 154.99 1 154.99 154.49 155.49 0 0 0 0 0.22632 1 31068 31068 0.50596 0.50457 1 52883 1555 35188 35209 51746 51746 0.05128912695795407 VVHRRLLH 8 Unmodified _VVHRRLLH_ 0 0 0 REV__ENST00000297488.10_1_8:17554794-17554932:-|nuORF REV__ENST00000297488.10_1_8:17554794-17554932:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 343.8475036621094 3 343.885799 1028.63557 NaN NaN NaN NaN NaN NaN NaN 32.308 1 32.308 31.808 32.808 0 0 0 0 0.21486 1 5865 5865 0.45834 0 1 + 52884 20380 35189 35210 51747 51747 0.12239390002036998 VVHVSLGVLL 10 Unmodified _VVHVSLGVLL_ 0 0 0 REV__GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant REV__GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.9022521972656 3 345.890215 1034.64882 NaN NaN NaN NaN NaN NaN NaN 9.7159 1 8.6223 8.1223 9.1223 -1.0936 0 0 0 0.22588 1 1055 1055 0 0 1 + 52885 18522 35190 35211 51748 51748 0.13287783270789078 VVIKLLLKI 9 Unmodified _VVIKLLLKI_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-3|PHC3 REV__nc|ENSG00000173889|Q8NDX5-3|PHC3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 346.8492126464844 3 346.926489 1037.75764 NaN NaN NaN NaN NaN NaN NaN 14.6 1 14.6 14.1 15.1 0 0 0 0 0.19635 1 2184 2184 0 0 1 + 52886 24178 35191 35212 51749 51749 0.24026994241035027 VVIKLLLKI 9 Unmodified _VVIKLLLKI_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-3|PHC3 REV__nc|ENSG00000173889|Q8NDX5-3|PHC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.8358154296875 3 346.926489 1037.75764 NaN NaN NaN NaN NaN NaN NaN 19.888 1 18.492 17.992 18.992 -1.3966 0 0 0 0.19635 1 3298 3298 0 0 1 + 52887 24178 35191 35212 51750 51750 0.24026994241035027 VVIKLLLKI 9 Unmodified _VVIKLLLKI_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-3|PHC3 REV__nc|ENSG00000173889|Q8NDX5-3|PHC3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.1971130371094 3 346.926489 1037.75764 NaN NaN NaN NaN NaN NaN NaN 30.6 1 28.484 27.984 28.984 -2.1167 0 0 0 0.19635 1 5533 5533 0 0 1 + 52888 24178 35191 35212 51751 51751 0.24026994241035027 VVIKLLLKI 9 Unmodified _VVIKLLLKI_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-3|PHC3 REV__nc|ENSG00000173889|Q8NDX5-3|PHC3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 347.1819763183594 3 346.926489 1037.75764 NaN NaN NaN NaN NaN NaN NaN 34 1 31.853 31.353 32.353 -2.1468 0 0 0 0.23508 1 5949 5949 0 0 1 + 52889 24178 35191 35212 51752 51752 0.24026994241035027 VVIKLLLKI 9 Unmodified _VVIKLLLKI_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-3|PHC3 REV__nc|ENSG00000173889|Q8NDX5-3|PHC3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 347.1881408691406 3 346.926489 1037.75764 NaN NaN NaN NaN NaN NaN NaN 20.075 1 18.439 17.939 18.939 -1.6351 0 0 0 0.19635 1 3069 3069 0 0 1 + 52890 24178 35191 35212 51753 51753 0.24026994241035027 VVIKLLPLKQ 10 Unmodified _VVIKLLPLKQ_ 0 0 0 REV__ENST00000519253.5_2_8:17849176-17851030:+|nuORF REV__ENST00000519253.5_2_8:17849176-17851030:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.312744140625 2 575.899734 1149.78492 0.17062 9.8261E-05 4.2085 0.0024237 4.3791 0.0025219 576.4036885552204 138.73 0.1788 133.78 133.63 133.81 -4.952 7 4 2 0 0 0 0.91149 1 26659 26659 3.5965 1.9439 1 720510 + 52891 22617 35192 35213 51754 51754 0.21601477781405265 VVILLIVILKG 11 Unmodified _VVILLIVILKG_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.25830078125 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 73.142 1 69.502 69.002 70.002 -3.6397 0 0 0 0.22632 1 13821 13821 0 0 1 52892 5525 35193 35214 51755 51755 0.25435221475277103 VVIPILPLA 9 Unmodified _VVIPILPLA_ 0 0 0 REV__ENST00000596070.1_1_19:6361585-6362062:+|nuORF REV__ENST00000596070.1_1_19:6361585-6362062:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.2169494628906 3 312.21604 933.62629 NaN NaN NaN NaN NaN NaN NaN 59.48 1 59.48 58.98 59.98 0 0 0 0 0.23508 1 11397 11397 0.26902 0 1 + 52893 23380 35194 35215 51756 51756 0.1568218387313891 VVIPILPLA 9 Unmodified _VVIPILPLA_ 0 0 0 REV__ENST00000596070.1_1_19:6361585-6362062:+|nuORF REV__ENST00000596070.1_1_19:6361585-6362062:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.2007141113281 3 312.21604 933.62629 NaN NaN NaN NaN NaN NaN NaN 78.823 1 75.334 74.834 75.834 -3.4888 0 0 0 0.23508 1 15391 15391 0.26902 0 1 + 52894 23380 35194 35215 51757 51757 0.1568218387313891 VVIPILPLA 9 Unmodified _VVIPILPLA_ 0 0 0 REV__ENST00000596070.1_1_19:6361585-6362062:+|nuORF REV__ENST00000596070.1_1_19:6361585-6362062:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.217041015625 3 312.21604 933.62629 NaN NaN NaN NaN NaN NaN NaN 95.876 1 91.995 91.495 92.495 -3.881 0 0 0 0.23508 1 18400 18400 0.26902 0 1 + 52895 23380 35194 35215 51758 51758 0.1568218387313891 VVITKAPTT 9 Unmodified _VVITKAPTT_ 0 0 0 REV__ENSG00000214866|ENST00000399143|DCDC2C REV__ENSG00000214866|ENST00000399143|DCDC2C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2480163574219 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 176.71 1 171.92 171.42 172.42 -4.7898 0 0 0 0.23508 1 36136 36136 0 0 1 + 52896 19676 35195 35216 51759 51759 0.09219528591347625 VVITKAPTT 9 Unmodified _VVITKAPTT_ 0 0 0 REV__ENSG00000214866|ENST00000399143|DCDC2C REV__ENSG00000214866|ENST00000399143|DCDC2C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2469177246094 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 177.03 1 172.16 171.66 172.66 -4.8739 0 0 0 0.19635 1 35226 35226 0 0 1 + 52897 19676 35195 35216 51760 51760 0.09219528591347625 VVITRHTKRK 10 Unmodified _VVITRHTKRK_ 0 0 0 REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1 REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 413.1620178222656 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 52.355 1 52.355 51.855 52.855 0 0 0 0 0.22588 1 9950 9950 0.77653 0.078866 1 + 52898 24694 35196 35217 51761 51761 0.1689555795353499 VVKHGRKKL 9 Unmodified _VVKHGRKKL_ 0 0 0 REV__ENST00000464030.1_1_10:96351997-96352234:+|nuORF REV__ENST00000464030.1_1_10:96351997-96352234:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 532.8546752929688 2 532.856193 1063.69783 NaN NaN NaN NaN NaN NaN NaN 10.9 1 9.9963 9.4963 10.496 -0.90401 0 0 0 0.19635 1 1403 1403 0 0 1 + 52899 21931 35197 35218 51762 51762 0.16853116350353048 VVKIRLALKRV 11 Unmodified _VVKIRLALKRV_ 0 0 0 REV__ENSG00000183186|ENST00000332235|C2CD4C REV__ENSG00000183186|ENST00000332235|C2CD4C MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 647.8736572265625 2 647.955907 1293.89726 NaN NaN NaN NaN NaN NaN NaN 171.67 1 166.88 166.38 167.38 -4.7898 0 0 0 0.23698 1 34920 34920 0 0 1 + 52900 18823 35198 35219 51763 51763 0.2620675157822916 VVKKIKKL 8 Unmodified _VVKKIKKL_ 0 0 0 REV__ENST00000606198.5_1_6:28109763-28116190:+|nuORF REV__ENST00000606198.5_1_6:28109763-28116190:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7283630371094 2 478.354963 954.695373 NaN NaN NaN NaN NaN NaN NaN 69.028 1 65.492 64.992 65.992 -3.5362 0 0 0 0.2396 1 12990 12990 0.12286 0 1 + 52901 23456 35199 35220 51764 51764 0.216212678927036 VVKKIKKL 8 Unmodified _VVKKIKKL_ 0 0 0 REV__ENST00000606198.5_1_6:28109763-28116190:+|nuORF REV__ENST00000606198.5_1_6:28109763-28116190:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7283630371094 2 478.354963 954.695373 NaN NaN NaN NaN NaN NaN NaN 69.039 1 65.502 65.002 66.002 -3.5362 0 0 0 0.21486 1 12992 12992 0.79363 0 1 + 52902 23456 35199 35220 51765 51765 0.216212678927036 VVKKKKFK 8 Unmodified _VVKKKKFK_ 0 0 0 nc|ENSG00000053918|P51787-2|KCNQ1;ENSG00000053918|ENST00000155840|KCNQ1;KCNQ1-GALNTL6|1|fusion nc|ENSG00000053918|P51787-2|KCNQ1 nc|ENSG00000053918|P51787-2|KCNQ1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 502.8380126953125 2 502.852587 1003.69062 NaN NaN NaN NaN NaN NaN NaN 9.6883 1 9.6883 9.1883 10.188 0 0 0 0 0.21486 1 1147 1147 0 0 1 52903 1260 35200 35221 51766 51766 0.1889238374993738 VVKKKKFK 8 Unmodified _VVKKKKFK_ 0 0 0 nc|ENSG00000053918|P51787-2|KCNQ1;ENSG00000053918|ENST00000155840|KCNQ1;KCNQ1-GALNTL6|1|fusion nc|ENSG00000053918|P51787-2|KCNQ1 nc|ENSG00000053918|P51787-2|KCNQ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 503.2490234375 2 502.852587 1003.69062 0.2039 0.00010253 -0.88346 -0.00044425 -0.67957 -0.00034172 502.8508541896245 155.92 0.20596 155.92 155.8 156 0 6 5 2 0 0 0 0.9003 1 31271 31271 0 0 1 1135200 52904 1260 35200 35221 51767 51767 0.1889238374993738 VVKKLFTP 8 Unmodified _VVKKLFTP_ 0 0 0 ENSG00000203668|ENST00000366553|CHML ENSG00000203668|ENST00000366553|CHML ENSG00000203668|ENST00000366553|CHML MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.20458984375 3 311.204023 930.590239 NaN NaN NaN NaN NaN NaN NaN 117.83 1 117.83 117.33 118.33 0 0 0 0 0.21486 1 23211 23211 0.40072 0 1 52905 7537 35201 35222 51768 51768 0.12216726696283331 VVKKLFTP 8 Unmodified _VVKKLFTP_ 0 0 0 ENSG00000203668|ENST00000366553|CHML ENSG00000203668|ENST00000366553|CHML ENSG00000203668|ENST00000366553|CHML MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.2312316894531 3 311.204023 930.590239 NaN NaN NaN NaN NaN NaN NaN 121.4 1 116.85 116.35 117.35 -4.5476 0 0 0 0.21486 1 23930 23930 0.40072 0 1 52906 7537 35201 35222 51769 51769 0.12216726696283331 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2455139160156 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 6.9854 1 6.9854 6.4854 7.4854 0 0 0 0 0.21486 1 590 590 0 0 1 52907 9915 35202 35223 51770 51770 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2377014160156 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 7.3654 1 7.3654 6.8654 7.8654 0 0 0 0 0.21486 1 665 665 0 0 1 52908 9915 35202 35223 51771 51771 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.23785400390625 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 7.7851 1 7.7851 7.2851 8.2851 0 0 0 0 0.21486 1 747 747 0 0 1 52909 9915 35202 35223 51772 51772 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.216552734375 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 14.63 1 14.63 14.13 15.13 0 0 0 0 0.21486 1 2190 2190 0 0 1 52910 9915 35202 35223 51773 51773 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2226867675781 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 14.707 1 14.707 14.207 15.207 0 0 0 0 0.21486 1 2206 2206 0 0 1 52911 9915 35202 35223 51774 51774 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2225036621094 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 16.054 1 16.054 15.554 16.554 0 0 0 0 0.21486 1 2481 2481 0 0 1 52912 9915 35202 35223 51775 51775 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2310791015625 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 76.943 1 76.943 76.443 77.443 0 0 0 0 0.21486 1 14954 14954 0 0 1 52913 9915 35202 35223 51776 51776 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650390625 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 131.68 1 131.68 131.18 132.18 0 0 0 0 0.2396 1 26027 26027 0 0 1 52914 9915 35202 35223 51777 51777 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16497802734375 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 132.61 1 132.61 132.11 133.11 0 0 0 0 0.2396 1 26221 26221 0 0 1 52915 9915 35202 35223 51778 51778 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1700134277344 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 132.88 1 132.88 132.38 133.38 0 0 0 0 0.21486 1 26276 26276 0 0 1 52916 9915 35202 35223 51779 51779 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650695800781 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 134.5 1 134.5 134 135 0 0 0 0 0.2396 1 26626 26626 0 0 1 52917 9915 35202 35223 51780 51780 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.22235107421875 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 134.53 1 134.53 134.03 135.03 0 0 0 0 0.21486 1 26631 26631 0 0 1 52918 9915 35202 35223 51781 51781 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2227478027344 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 135.29 1 135.29 134.79 135.79 0 0 0 0 0.21486 1 26797 26797 0 0 1 52919 9915 35202 35223 51782 51782 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2222900390625 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 22.6 1 21.047 20.547 21.547 -1.5532 0 0 0 0.21486 1 3870 3870 0 0 1 52920 9915 35202 35223 51783 51783 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.15765380859375 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 41.613 1 38.978 38.478 39.478 -2.6348 0 0 0 0.21486 1 7773 7773 0 0 1 52921 9915 35202 35223 51784 51784 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16522216796875 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 50.423 1 47.542 47.042 48.042 -2.8811 0 0 0 0.2396 1 9566 9566 0 0 1 52922 9915 35202 35223 51785 51785 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.164794921875 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 51.706 1 48.823 48.323 49.323 -2.8824 0 0 0 0.2396 1 9828 9828 0 0 1 52923 9915 35202 35223 51786 51786 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2221984863281 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 134.51 1 129.87 129.37 130.37 -4.6399 0 0 0 0.21486 1 26525 26525 0 0 1 52924 9915 35202 35223 51787 51787 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1651306152344 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 136.01 1 131.37 130.87 131.87 -4.6399 0 0 0 0.21486 1 26834 26834 0 0 1 52925 9915 35202 35223 51788 51788 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2305603027344 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 136.39 1 131.75 131.25 132.25 -4.6399 0 0 0 0.21486 1 26912 26912 0 0 1 52926 9915 35202 35223 51789 51789 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16455078125 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 136.74 1 132.1 131.6 132.6 -4.6399 0 0 0 0.2396 1 26982 26982 0 0 1 52927 9915 35202 35223 51790 51790 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2378234863281 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 8.3888 1 7.3244 6.8244 7.8244 -1.0645 0 0 0 0.21486 1 818 818 0 0 1 52928 9915 35202 35223 51791 51791 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1705017089844 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 20.865 1 19.48 18.98 19.98 -1.3847 0 0 0 0.21486 1 3255 3255 0 0 1 52929 9915 35202 35223 51792 51792 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1635437011719 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 28.345 1 26.59 26.09 27.09 -1.7552 0 0 0 0.2396 1 4780 4780 0 0 1 52930 9915 35202 35223 51793 51793 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2301330566406 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 139.53 1 134.58 134.08 135.08 -4.952 0 0 0 0.21486 1 26840 26840 0 0 1 52931 9915 35202 35223 51794 51794 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2220764160156 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 155.26 1 149.98 149.48 150.48 -5.2854 0 0 0 0.21486 1 30115 30115 0 0 1 52932 9915 35202 35223 51795 51795 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2231140136719 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 22.707 1 20.918 20.418 21.418 -1.7886 0 0 0 0.21486 1 3619 3619 0 0 1 52933 9915 35202 35223 51796 51796 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2221984863281 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 29.25 1 27.254 26.754 27.754 -1.9962 0 0 0 0.21486 1 4967 4967 0 0 1 52934 9915 35202 35223 51797 51797 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2222900390625 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 38.632 1 36.228 35.728 36.728 -2.4049 0 0 0 0.21486 1 6879 6879 0 0 1 52935 9915 35202 35223 51798 51798 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2220458984375 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 54.755 1 51.617 51.117 52.117 -3.1377 0 0 0 0.21486 1 10143 10143 0 0 1 52936 9915 35202 35223 51799 51799 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.222900390625 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 56.804 1 53.628 53.128 54.128 -3.1761 0 0 0 0.21486 1 10578 10578 0 0 1 52937 9915 35202 35223 51800 51800 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.15277099609375 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 67.073 1 63.746 63.246 64.246 -3.3268 0 0 0 0.21486 1 12642 12642 0 0 1 52938 9915 35202 35223 51801 51801 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.23046875 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 80.981 1 77.293 76.793 77.793 -3.6879 0 0 0 0.21486 1 15435 15435 0 0 1 52939 9915 35202 35223 51802 51802 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2377624511719 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 101.9 1 97.881 97.381 98.381 -4.0212 0 0 0 0.21486 1 19583 19583 0 0 1 52940 9915 35202 35223 51803 51803 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2226867675781 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 138.6 1 133.75 133.25 134.25 -4.8492 0 0 0 0.21486 1 26714 26714 0 0 1 52941 9915 35202 35223 51804 51804 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2372131347656 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 139.2 1 134.35 133.85 134.85 -4.8492 0 0 0 0.21486 1 26833 26833 0 0 1 52942 9915 35202 35223 51805 51805 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2230529785156 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 139.25 1 134.41 133.91 134.91 -4.8492 0 0 0 0.21486 1 26844 26844 0 0 1 52943 9915 35202 35223 51806 51806 0.18136988621688488 VVKKLKLT 8 Unmodified _VVKKLKLT_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2303466796875 3 310.223306 927.648088 NaN NaN NaN NaN NaN NaN NaN 139.56 1 134.71 134.21 135.21 -4.8492 0 0 0 0.21486 1 26906 26906 0 0 1 52944 9915 35202 35223 51807 51807 0.18136988621688488 VVKQIRSV 8 Unmodified _VVKQIRSV_ 0 0 0 REV__ENST00000583899.5_1_17:7477924-7480015:+|nuORF REV__ENST00000583899.5_1_17:7477924-7480015:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1697998046875 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 13.332 1 12.211 11.711 12.711 -1.1206 0 0 0 0.2396 1 1676 1676 0.12286 0 1 + 52945 23243 35203 35224 51808 51808 0.11986056922410171 VVKRKADL 8 Unmodified _VVKRKADL_ 0 0 0 nc|ENSG00000160062|Q96BR9-2|ZBTB8A;ENSG00000160062|ENST00000373510|ZBTB8A nc|ENSG00000160062|Q96BR9-2|ZBTB8A nc|ENSG00000160062|Q96BR9-2|ZBTB8A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1651611328125 3 310.202793 927.58655 NaN NaN NaN NaN NaN NaN NaN 10.378 1 9.474 8.974 9.974 -0.90401 0 0 0 0.2396 1 1294 1294 0.30703 0 1 52946 5227 35204 35225 51809 51809 0.11986056922410171 VVKRKIRKG 9 Unmodified _VVKRKIRKG_ 0 0 0 REV__ENST00000427240.1_1_1:40011515-40014603:-|nuORF REV__ENST00000427240.1_1_1:40011515-40014603:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.9189453125 3 361.92062 1082.74003 NaN NaN NaN NaN NaN NaN NaN 9.5139 1 9.5139 9.0139 10.014 0 0 0 0 0.23508 1 1107 1107 0 0 1 + 52947 21579 35205 35226 51810 51810 0.20197091758723218 VVKRKIRKG 9 Unmodified _VVKRKIRKG_ 0 0 0 REV__ENST00000427240.1_1_1:40011515-40014603:-|nuORF REV__ENST00000427240.1_1_1:40011515-40014603:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 361.9123229980469 3 361.92062 1082.74003 NaN NaN NaN NaN NaN NaN NaN 10.467 1 9.401 8.901 9.901 -1.0664 0 0 0 0.23508 1 1133 1133 0 0 1 + 52948 21579 35205 35226 51811 51811 0.20197091758723218 VVKTLRGHLE 10 Unmodified _VVKTLRGHLE_ 0 0 0 ENST00000480486.1_1_21:37758395-37770302:+|nuORF;ENSG00000159259|ENST00000314103|CHAF1B ENST00000480486.1_1_21:37758395-37770302:+|nuORF ENST00000480486.1_1_21:37758395-37770302:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3301391601562 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 31.378 1 29.147 28.647 29.647 -2.2305 0 0 0 2.8426 1 5694 5694 0 0 1 52949 5198 35206 35227 51812 51812 0.11292785042678588 VVKVPHKL 8 Unmodified _VVKVPHKL_ 0 0 0 ENST00000256951.9_1_12:13368336-13368474:+|nuORF ENST00000256951.9_1_12:13368336-13368474:+|nuORF ENST00000256951.9_1_12:13368336-13368474:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 307.23931884765625 3 307.207767 918.601472 NaN NaN NaN NaN NaN NaN NaN 4.2925 1 3.2837 2.7837 3.7837 -1.0089 0 0 0 0.21486 1 49 49 0 0 1 52950 8261 35207 35228 51813 51813 0.13891548790400066 VVLDFGPRY 9 Unmodified _VVLDFGPRY_ 0 0 0 REV__EXTL3|p.Y472Tfs*37|1|0.34|ENSG00000012232|chr8:28717468-28717468|T/-|frameshift_variant REV__EXTL3|p.Y472Tfs*37|1|0.34|ENSG00000012232|chr8:28717468-28717468|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2741088867188 2 533.290017 1064.56548 NaN NaN NaN NaN NaN NaN NaN 88.294 1 84.501 84.001 85.001 -3.7926 0 0 0 0.19638 1 17271 17271 2.6312 0.88896 1 + 52951 13943 35208 35229 51814 51814 0.03578046822894976 VVLFKVAMTQ 10 Unmodified _VVLFKVAMTQ_ 0 0 0 REV__TRPC6|p.G794Vfs*8|1|0.27|ENSG00000137672|chr11:101471213-101471213|T/-|frameshift_variant REV__TRPC6|p.G794Vfs*8|1|0.27|ENSG00000137672|chr11:101471213-101471213|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 379.2228698730469 3 379.222977 1134.6471 NaN NaN NaN NaN NaN NaN NaN 63.08 1 60.083 59.583 60.583 -2.9975 0 0 0 2.8426 1 12180 12180 0.20733 0 1 + 52952 16402 35209 35230 51815 51815 0.08516406190506132 VVLIIKKVK 9 Unmodified _VVLIIKKVK_ 0 0 0 REV__LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant REV__LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.3148193359375 3 347.258239 1038.75289 NaN NaN NaN NaN NaN NaN NaN 176.69 1 171.9 171.4 172.4 -4.7898 0 0 0 0.23508 1 36132 36132 0 0 1 + 52953 23811 35210 35231 51816 51816 0.23506110098264799 VVLIIKKVK 9 Unmodified _VVLIIKKVK_ 0 0 0 REV__LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant REV__LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 347.27923583984375 3 347.258239 1038.75289 NaN NaN NaN NaN NaN NaN NaN 177.73 1 172.86 172.36 173.36 -4.8686 0 0 0 0.23508 1 35373 35373 0 0 1 + 52954 23811 35210 35231 51817 51817 0.23506110098264799 VVLIRQNIK 9 Unmodified _VVLIRQNIK_ 0 0 0 REV__nc|ENSG00000120217|Q9NZQ7-2|CD274 REV__nc|ENSG00000120217|Q9NZQ7-2|CD274 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.85546875 2 541.855858 1081.69716 NaN NaN NaN NaN NaN NaN NaN 10.674 1 9.7704 9.2704 10.27 -0.90401 0 0 0 0.23508 1 1356 1356 0 0 1 + 52955 13331 35211 35232 51818 51818 0.1595827691062368 VVLLILKI 8 Unmodified _VVLLILKI_ 0 0 0 REV__ENSG00000168329|ENST00000399220|CX3CR1 REV__ENSG00000168329|ENST00000399220|CX3CR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.1753845214844 3 304.228168 909.662675 NaN NaN NaN NaN NaN NaN NaN 144.44 1 139.49 138.99 139.99 -4.9445 0 0 0 0.21486 1 27898 27898 0 0 1 + 52956 18014 35212 35233 51819 51819 0.20423060769826407 VVLLKKHI 8 Unmodified _VVLLKKHI_ 0 0 0 ENST00000581302.5_1_18:21033283-21057068:+|nuORF;RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581339.1_1_18:21053400-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.15045166015625 3 317.223417 948.648422 NaN NaN NaN NaN NaN NaN NaN 101.75 1 101.75 101.25 102.25 0 0 0 0 0.21486 1 19979 19979 0 0 1 52957 2084 35213 35234 51820 51820 0.17204408341535782 VVLLKKHI 8 Unmodified _VVLLKKHI_ 0 0 0 ENST00000581302.5_1_18:21033283-21057068:+|nuORF;RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581339.1_1_18:21053400-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 317.2218933105469 3 317.223417 948.648422 NaN NaN NaN NaN NaN NaN NaN 83.06 1 79.452 78.952 79.952 -3.6079 0 0 0 0.21486 1 16234 16234 0 0 1 52958 2084 35213 35234 51821 51821 0.17204408341535782 VVLLKKHI 8 Unmodified _VVLLKKHI_ 0 0 0 ENST00000581302.5_1_18:21033283-21057068:+|nuORF;RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581339.1_1_18:21053400-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.2221374511719 3 317.223417 948.648422 NaN NaN NaN NaN NaN NaN NaN 79.165 1 75.489 74.989 75.989 -3.676 0 0 0 0.21486 1 15082 15082 0 0 1 52959 2084 35213 35234 51822 51822 0.17204408341535782 VVLLKKHI 8 Unmodified _VVLLKKHI_ 0 0 0 ENST00000581302.5_1_18:21033283-21057068:+|nuORF;RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581339.1_1_18:21053400-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.2214050292969 3 317.223417 948.648422 NaN NaN NaN NaN NaN NaN NaN 91.466 1 87.658 87.158 88.158 -3.8083 0 0 0 0.21486 1 17512 17512 0 0 1 52960 2084 35213 35234 51823 51823 0.17204408341535782 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1695861816406 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 19.468 1 19.468 18.968 19.968 0 0 0 0 0.19624 1 3184 3184 0.40827 0 1 52961 11841 35214 35235 51824 51824 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1695861816406 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 19.476 1 19.476 18.976 19.976 0 0 0 0 0.23508 1 3185 3185 1.1933 0 1 52962 11841 35214 35235 51825 51825 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648864746094 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 19.717 1 19.717 19.217 20.217 0 0 0 0 0.19624 1 3234 3234 0.40827 0 1 52963 11841 35214 35235 51826 51826 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648864746094 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 19.728 1 19.728 19.228 20.228 0 0 0 0 0.23508 1 3236 3236 1.1933 0 1 52964 11841 35214 35235 51827 51827 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.23089599609375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 34.797 1 34.797 34.297 35.297 0 0 0 0 0.23508 1 6376 6376 1.1933 0 1 52965 11841 35214 35235 51828 51828 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1695251464844 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 40.211 1 40.211 39.711 40.711 0 0 0 0 0.23508 1 7477 7477 1.1933 0 1 52966 11841 35214 35235 51829 51829 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697692871094 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 47.302 1 47.302 46.802 47.802 0 0 0 0 0.23508 1 8917 8917 1.1933 0 1 52967 11841 35214 35235 51830 51830 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 53.539 1 53.539 53.039 54.039 0 0 0 0 0.23508 1 10198 10198 1.1933 0 1 52968 11841 35214 35235 51831 51831 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16961669921875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 56.535 1 56.535 56.035 57.035 0 0 0 0 0.19624 1 10798 10798 0.40827 0 1 52969 11841 35214 35235 51832 51832 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1646728515625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 58.898 1 58.898 58.398 59.398 0 0 0 0 0.19624 1 11279 11279 0.40827 0 1 52970 11841 35214 35235 51833 51833 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1654357910156 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 16.903 1 15.687 15.187 16.187 -1.2159 0 0 0 0.19624 1 2685 2685 0.40827 0 1 52971 11841 35214 35235 51834 51834 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.21435546875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 21.561 1 20.086 19.586 20.586 -1.4742 0 0 0 0.23508 1 3652 3652 1.1933 0 1 52972 11841 35214 35235 51835 51835 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16571044921875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 25.443 1 23.795 23.295 24.295 -1.6482 0 0 0 0.23508 1 4462 4462 1.1933 0 1 52973 11841 35214 35235 51836 51836 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 36.656 1 34.187 33.687 34.687 -2.4688 0 0 0 0.19624 1 6771 6771 0.40827 0 1 52974 11841 35214 35235 51837 51837 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1646728515625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 37.082 1 34.614 34.114 35.114 -2.4688 0 0 0 0.19624 1 6848 6848 0.40827 0 1 52975 11841 35214 35235 51838 51838 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16473388671875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 53.348 1 50.465 49.965 50.965 -2.8837 0 0 0 0.23508 1 10163 10163 1.1933 0 1 52976 11841 35214 35235 51839 51839 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1645202636719 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 57.267 1 54.372 53.872 54.872 -2.8944 0 0 0 0.19624 1 10989 10989 0.40827 0 1 52977 11841 35214 35235 51840 51840 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1654052734375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 60.039 1 57.106 56.606 57.606 -2.9333 0 0 0 0.1964 1 11548 11548 0.40827 0 1 52978 11841 35214 35235 51841 51841 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 61.062 1 58.128 57.628 58.628 -2.9333 0 0 0 0.23508 1 11761 11761 1.1933 0 1 52979 11841 35214 35235 51842 51842 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1288757324219 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 88.091 1 84.298 83.798 84.798 -3.7926 0 0 0 0.23508 1 17229 17229 1.1933 0 1 52980 11841 35214 35235 51843 51843 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649475097656 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 59.736 1 56.422 55.922 56.922 -3.3139 0 0 0 0.23508 1 11113 11113 1.1933 0 1 52981 11841 35214 35235 51844 51844 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.22198486328125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 80.48 1 76.641 76.141 77.141 -3.8392 0 0 0 0.23508 1 15276 15276 1.1933 0 1 52982 11841 35214 35235 51845 51845 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.23028564453125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 97.303 1 93.068 92.568 93.568 -4.2348 0 0 0 0.23508 1 18585 18585 1.1933 0 1 52983 11841 35214 35235 51846 51846 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.20147705078125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 21.189 1 19.468 18.968 19.968 -1.7211 0 0 0 0.19624 1 3301 3301 0.40827 0 1 52984 11841 35214 35235 51847 51847 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.163330078125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 21.84 1 20.119 19.619 20.619 -1.7211 0 0 0 0.19624 1 3437 3437 0.40827 0 1 52985 11841 35214 35235 51848 51848 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.17059326171875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 23.676 1 21.888 21.388 22.388 -1.7886 0 0 0 0.23508 1 3819 3819 1.1933 0 1 52986 11841 35214 35235 51849 51849 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1643981933594 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 23.808 1 22.02 21.52 22.52 -1.7886 0 0 0 0.19624 1 3847 3847 0.40827 0 1 52987 11841 35214 35235 51850 51850 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16455078125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 24.569 1 22.716 22.216 23.216 -1.8534 0 0 0 0.19624 1 4000 4000 0.40827 0 1 52988 11841 35214 35235 51851 51851 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16455078125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 26.473 1 24.551 24.051 25.051 -1.9222 0 0 0 0.19624 1 4387 4387 0.40827 0 1 52989 11841 35214 35235 51852 51852 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1651306152344 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 28.786 1 26.79 26.29 27.29 -1.9962 0 0 0 0.1964 1 4871 4871 0.40827 0.34428 1 52990 11841 35214 35235 51853 51853 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.165283203125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 31.808 1 29.66 29.16 30.16 -2.1483 0 0 0 0.19624 1 5491 5491 0.40827 0 1 52991 11841 35214 35235 51854 51854 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16552734375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 36.85 1 34.513 34.013 35.013 -2.3375 0 0 0 0.19624 1 6510 6510 0.40827 0 1 52992 11841 35214 35235 51855 51855 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 58.236 1 55.031 54.531 55.531 -3.2052 0 0 0 0.23508 1 10864 10864 1.1933 0 1 52993 11841 35214 35235 51856 51856 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.170654296875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 58.304 1 55.099 54.599 55.599 -3.2052 0 0 0 0.23508 1 10878 10878 1.1933 0 1 52994 11841 35214 35235 51857 51857 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 60.223 1 57 56.5 57.5 -3.2237 0 0 0 0.19624 1 11260 11260 0.40827 0 1 52995 11841 35214 35235 51858 51858 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1646728515625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 60.498 1 57.274 56.774 57.774 -3.2237 0 0 0 0.19624 1 11315 11315 0.40827 0 1 52996 11841 35214 35235 51859 51859 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16485595703125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 60.746 1 57.523 57.023 58.023 -3.2237 0 0 0 0.19624 1 11364 11364 0.40827 0 1 52997 11841 35214 35235 51860 51860 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 64.421 1 61.164 60.664 61.664 -3.2567 0 0 0 0.19624 1 12094 12094 0.40827 0 1 52998 11841 35214 35235 51861 51861 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1651916503906 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 64.917 1 61.634 61.134 62.134 -3.2832 0 0 0 0.19624 1 12195 12195 0.40827 0 1 52999 11841 35214 35235 51862 51862 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2375793457031 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 80.444 1 76.756 76.256 77.256 -3.6879 0 0 0 0.23508 1 15338 15338 1.1933 0 1 53000 11841 35214 35235 51863 51863 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647644042969 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 83.702 1 80.004 79.504 80.504 -3.6985 0 0 0 0.23508 1 15983 15983 1.1933 0 1 53001 11841 35214 35235 51864 51864 0.11265324321982462 VVLLPPPPP 9 Unmodified _VVLLPPPPP_ 0 0 0 GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion GBX2|p.L55dup|1|0.27|ENSG00000168505|chr2:236167805-236167806|-/GCA|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2223205566406 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 88.09 1 84.34 83.84 84.84 -3.7501 0 0 0 0.23508 1 16858 16858 1.1933 0 1 53002 11841 35214 35235 51865 51865 0.11265324321982462 VVLLRLKL 8 Unmodified _VVLLRLKL_ 0 0 0 ENSG00000162944|ENST00000295049|RFTN2 ENSG00000162944|ENST00000295049|RFTN2 ENSG00000162944|ENST00000295049|RFTN2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 477.76824951171875 2 477.347138 952.679722 NaN NaN NaN NaN NaN NaN NaN 42.394 1 39.788 39.288 40.288 -2.606 0 0 0 0.2396 1 7625 7625 0 0 1 53003 5386 35215 35236 51866 51866 0.2014898137564387 VVLLVLTKL 9 Unmodified _VVLLVLTKL_ 0 0 0 ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 332.9992980957031 3 333.238844 996.694704 NaN NaN NaN NaN NaN NaN NaN 69.246 1 65.856 65.356 66.356 -3.3903 0 0 0 0.23508 1 13091 13091 0 0 1 53004 4966 35216 35237 51867 51867 0.19622428452976237 VVLRNPLIAGK 11 Unmodified _VVLRNPLIAGK_ 0 0 0 nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.266845703125 2 590.38224 1178.74993 NaN NaN NaN NaN NaN NaN NaN 173.25 1 173.25 172.75 173.75 0 0 0 0 0.2062 1 35815 35815 17.572 15.88 1 53005 3382 35217 35238 51868 51868 0.16770234973455445 VVLRNPLIAGK 11 Unmodified _VVLRNPLIAGK_ 0 0 0 nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2527465820312 2 590.38224 1178.74993 NaN NaN NaN NaN NaN NaN NaN 173.06 1 168.27 167.77 168.77 -4.7898 0 0 0 0.22842 1 35281 35281 9.544 4.4965 1 53006 3382 35217 35238 51869 51869 0.16770234973455445 VVLRNPLIAGK 11 Unmodified _VVLRNPLIAGK_ 0 0 0 nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2587280273438 2 590.38224 1178.74993 NaN NaN NaN NaN NaN NaN NaN 173.09 1 168.3 167.8 168.8 -4.7898 0 0 0 0.22632 1 35288 35288 5.4027 5.2628 1 53007 3382 35217 35238 51870 51870 0.16770234973455445 VVLRNPLIAGK 11 Unmodified _VVLRNPLIAGK_ 0 0 0 nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2587280273438 2 590.38224 1178.74993 NaN NaN NaN NaN NaN NaN NaN 173.1 1 168.31 167.81 168.81 -4.7898 0 0 0 0.22765 1 35293 35293 10.151 1.4052 1 53008 3382 35217 35238 51871 51871 0.16770234973455445 VVLRPRRL 8 Unmodified _VVLRPRRL_ 0 0 0 ENST00000498448.1_1_1:38157053-38157765:-|nuORF ENST00000498448.1_1_1:38157053-38157765:-|nuORF ENST00000498448.1_1_1:38157053-38157765:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 336.904541015625 3 336.897816 1007.67162 NaN NaN NaN NaN NaN NaN NaN 9.3971 1 9.3971 8.8971 9.8971 0 0 0 0 0.21486 1 1082 1082 0 0 1 53009 10603 35218 35239 51872 51872 0.16808847178879205 VVLVIVIFIF 10 Unmodified _VVLVIVIFIF_ 0 0 0 nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A;nc|ENSG00000168356|Q9UI33-2|SCN11A;SCN11A|p.F723Lfs*37|1|0.39|ENSG00000168356|chr3:38897079-38897079|A/-|frameshift_variant nc|ENSG00000168356|Q9UI33-3|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.92523193359375 3 387.926378 1160.7573 NaN NaN NaN NaN NaN NaN NaN 10.303 1 9.3994 8.8994 9.8994 -0.90401 0 0 0 0.22588 1 1278 1278 0 0 1 53010 5900 35219 35240 51873 51873 0.18335574521142917 VVLVKIPPLL 10 Unmodified _VVLVKIPPLL_ 0 0 0 REV__ENST00000475124.1_1_3:53892553-53899332:+|nuORF REV__ENST00000475124.1_1_3:53892553-53899332:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 545.8854370117188 2 545.883553 1089.75255 NaN NaN NaN NaN NaN NaN NaN 179.4 1 179.4 178.9 179.9 0 0 0 0 2.8426 1 37163 37163 0 0 1 + 53011 14123 35220 35241 51874 51874 0.21126690378423518 VVLWLLGY 8 Unmodified _VVLWLLGY_ 0 0 0 MRGPRX4|p.R55H|1|0.33|ENSG00000179817|chr11:18173420-18173420|G/A|missense_variant;MRGPRX4|p.L187Yfs*25|1|0.25|ENSG00000179817|chr11:18173810-18173810|T/-|frameshift_variant;ENSG00000179817|ENST00000314254|MRGPRX4 MRGPRX4|p.R55H|1|0.33|ENSG00000179817|chr11:18173420-18173420|G/A|missense_variant MRGPRX4|p.R55H|1|0.33|ENSG00000179817|chr11:18173420-18173420|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78741455078125 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 109.21 1 104.83 104.33 105.33 -4.3776 0 0 0 0.21022 1 21524 21524 17.087 0.14425 1 53012 6643 35221 35242 51875 51875 0.08137037804954161 VVMAGIVQY 9 Unmodified _VVMAGIVQY_ 0 0 0 nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A nc|ENSG00000054793|O75110-2|ATP9A nc|ENSG00000054793|O75110-2|ATP9A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2662353515625 2 490.267696 978.520839 NaN NaN NaN NaN NaN NaN NaN 46.98 1 44.03 43.53 44.53 -2.9499 0 0 0 0.22251 1 8562 8562 16.942 1.0951 1 53013 1268 35222 35243 51876 51876 0.030718996852101554 VVMEKEPP 8 Unmodified _VVMEKEPP_ 0 0 0 ENST00000608402.1_1_4:140478044-140478398:+|nuORF ENST00000608402.1_1_4:140478044-140478398:+|nuORF ENST00000608402.1_1_4:140478044-140478398:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 125.44 1 120.67 120.17 121.17 -4.7681 0 0 0 0.2396 1 24076 24076 0.12286 0 1 53014 11764 35223 35244 51877 51877 0.00691620414204408 VVNHSIKILE 10 Unmodified _VVNHSIKILE_ 0 0 0 REV__tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1 REV__tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3164672851562 2 576.342781 1150.67101 0.16675 9.6106E-05 -0.55519 -0.00031998 -0.38844 -0.00022387 576.3411905760933 128.54 0.1747 123.8 123.73 123.9 -4.7408 7 4 2 0 0 0 0.74842 1 24729 24729 6.2058 0 1 610580 + 53015 24876 35224 35245 51878 51878 0.10169962948521061 VVNIKVTLPLA 11 Unmodified _VVNIKVTLPLA_ 0 0 0 ENST00000537045.5_1_22:19025468-19025981:-|nuORF ENST00000537045.5_1_22:19025468-19025981:-|nuORF ENST00000537045.5_1_22:19025468-19025981:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 583.8784790039062 2 583.878999 1165.74344 NaN NaN NaN NaN NaN NaN NaN 11.231 1 10.164 9.6642 10.664 -1.0664 0 0 0 0.23698 1 1260 1260 0 0 1 53016 11031 35225 35246 51879 51879 0.16720297022106934 VVNIKVTLPLA 11 Unmodified _VVNIKVTLPLA_ 0 0 0 ENST00000537045.5_1_22:19025468-19025981:-|nuORF ENST00000537045.5_1_22:19025468-19025981:-|nuORF ENST00000537045.5_1_22:19025468-19025981:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 583.877685546875 2 583.878999 1165.74344 NaN NaN NaN NaN NaN NaN NaN 11.554 1 10.488 9.988 10.988 -1.0664 0 0 0 0.23698 1 1320 1320 0 0 1 53017 11031 35225 35246 51880 51880 0.16720297022106934 VVNKASSVD 9 Unmodified _VVNKASSVD_ 0 0 0 REV__MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant REV__MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2394104003906 2 459.748182 917.481811 0.3092 0.00014216 3.5371 0.0016262 3.8463 0.0017683 459.74786059274834 74.88 0.20795 71.286 71.164 71.372 -3.594 6 5 2 0 0 0 0.80521 1 14211 14211 15.847 11.518 1 377680 + 53018 14071 35226 35247 51881 51881 0.019768906551917098 VVNSMKEM 8 Unmodified _VVNSMKEM_ 0 0 0 REV__SOHLH2|p.K134Nfs*48|1|0.07|ENSG00000120669|chr13:36193649-36193649|T/-|frameshift_variant REV__SOHLH2|p.K134Nfs*48|1|0.07|ENSG00000120669|chr13:36193649-36193649|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.16455078125 3 313.154234 936.440874 0.23734 7.4325E-05 -0.95653 -0.00029954 -0.71918 -0.00022522 313.1540296806407 93.236 0.71521 89.093 88.802 89.517 -4.1435 28 20 2 0 0 0 1.0277 1 17720 17720 1.6526 1.3836 1 1297300 + 53019 15626 35227 35248 51882 51882 -0.029889099802858254 VVNSMKEM 8 Unmodified _VVNSMKEM_ 0 0 0 REV__SOHLH2|p.K134Nfs*48|1|0.07|ENSG00000120669|chr13:36193649-36193649|T/-|frameshift_variant REV__SOHLH2|p.K134Nfs*48|1|0.07|ENSG00000120669|chr13:36193649-36193649|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.18353271484375 3 313.154234 936.440874 -0.60977 -0.00019095 -0.17514 -5.4847E-05 -0.78491 -0.0002458 313.15424399649794 92.975 0.64876 89.131 88.749 89.398 -3.844 26 18 2 0 0 0 1.027 1 17773 17773 3.2813 0 1 941130 + 53020 15626 35227 35248 51883 51883 -0.029889099802858254 VVPEPTKVS 9 Unmodified _VVPEPTKVS_ 0 0 0 REV__MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant REV__MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 479.78106689453125 2 478.276575 954.538597 0.18714 8.9504E-05 0.55597 0.00026591 0.74311 0.00035541 478.2765439119209 123.62 0.91975 119.05 118.56 119.48 -4.5757 79 25 4 0 0 0 0.2213 1 24367 24367 4.7159 0 1 15788000 + 53021 16387 35228 35249 51884 51884 0.0595093821170849 VVPHLGAG 8 Unmodified _VVPHLGAG_ 0 0 0 REV__ADGRA2|p.L985Pfs*2|1|0.18|ENSG00000020181|chr8:37841292-37841292|T/-|frameshift_variant REV__ADGRA2|p.L985Pfs*2|1|0.18|ENSG00000020181|chr8:37841292-37841292|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21844482421875 2 375.218863 748.423173 NaN NaN NaN NaN NaN NaN NaN 124.89 1 120.29 119.79 120.79 -4.5984 0 0 0 0.2396 1 24627 24627 0.30703 0 1 + 53022 12961 35229 35250 51885 51885 0.038898788713822796 VVPIVVKIDKG 11 Unmodified _VVPIVVKIDKG_ 0 0 0 REV__ENSG00000175318|ENST00000309731|GRAMD2A REV__ENSG00000175318|ENST00000309731|GRAMD2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 583.87841796875 2 583.878999 1165.74344 NaN NaN NaN NaN NaN NaN NaN 11.23 1 11.23 10.73 11.73 0 0 0 0 0.23698 1 1472 1472 0 0 1 + 53023 18472 35230 35251 51886 51886 0.1672029702206146 VVPKGKARIR 10 Unmodified _VVPKGKARIR_ 0 0 0 ENSG00000100116|ENST00000248924|GCAT;nc|ENSG00000100116|O75600-2|GCAT ENSG00000100116|ENST00000248924|GCAT ENSG00000100116|ENST00000248924|GCAT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.214599609375 3 375.252258 1122.73495 NaN NaN NaN NaN NaN NaN NaN 177.01 1 172.11 171.61 172.61 -4.9008 0 0 0 0.22588 1 35297 35297 0 0 1 53024 1931 35231 35252 51887 51887 0.17848787896105023 VVPKLLRNI 9 Unmodified _VVPKLLRNI_ 0 0 0 nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851|CASP10;CASP10|p.F397Hfs*7|1|0.3|ENSG00000003400|chr2:201209333-201209334|TT/-|frameshift_variant;CASP10|p.K392Nfs*26|1|0.1|ENSG00000003400|chr2:201209319-201209319|A/-|frameshift_variant;nc|ENSG00000003400|Q92851-2|CASP10;ENSG00000003400|ENST00000286186|CASP10;ENST00000485408.1_1_2:202052480-202057847:+|nuORF;nc|ENSG00000003400|Q92851-7|CASP10;nc|ENSG00000003400|Q92851-3|CASP10;ENST00000460140.5_1_2:202050494-202070750:+|nuORF;nc|ENSG00000003400|Q92851-6|CASP10 nc|ENSG00000003400|Q92851-5|CASP10 nc|ENSG00000003400|Q92851-5|CASP10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 351.0772705078125 3 351.237726 1050.69135 NaN NaN NaN NaN NaN NaN NaN 7.1019 1 6.4228 5.9228 6.9228 -0.67913 0 0 0 0.23508 1 609 609 0 0 1 53025 12203 35232 35253 51888 51888 0.16803178399004537 VVPKLSEFELI 11 Unmodified _VVPKLSEFELI_ 0 0 0 RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant;nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17 RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant RNF17|p.C1288Vfs*21|1|0.1|ENSG00000132972|chr13:24861352-24861352|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.24395751953125 3 425.25159 1272.73294 NaN NaN NaN NaN NaN NaN NaN 175.39 1 170.5 170 171 -4.8845 0 0 0 0.22632 1 34879 34879 0.026206 0 1 53026 3775 35233 35254 51889 51889 0.1074826957701589 VVPLLIILTL 10 Unmodified _VVPLLIILTL_ 0 0 0 REV__nc|ENSG00000138798|P01133-2|EGF REV__nc|ENSG00000138798|P01133-2|EGF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7784423828125 2 547.383386 1092.75222 NaN NaN NaN NaN NaN NaN NaN 114.71 1 110.4 109.9 110.9 -4.3136 0 0 0 2.8426 1 22086 22086 0 0 1 + 53027 16494 35234 35255 51890 51890 0.2095527065857823 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16522216796875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 13.533 1 13.533 13.033 14.033 0 0 0 0 0.2396 1 1960 1960 0.12286 0 1 + 53028 19204 35235 35256 51891 51891 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16925048828125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 14.483 1 14.483 13.983 14.983 0 0 0 0 0.23626 1 2159 2159 0.62683 0.50396 1 + 53029 19204 35235 35256 51892 51892 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651916503906 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 14.517 1 14.517 14.017 15.017 0 0 0 0 0.2325 1 2166 2166 0.62683 0.50396 1 + 53030 19204 35235 35256 51893 51893 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697692871094 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 17.386 1 17.386 16.886 17.886 0 0 0 0 0.21486 1 2752 2752 1.4819 0.28856 1 + 53031 19204 35235 35256 51894 51894 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.170166015625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 19.769 1 19.769 19.269 20.269 0 0 0 0 0.21486 1 3245 3245 3.5965 1.9439 1 + 53032 19204 35235 35256 51895 51895 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 59.898 1 59.898 59.398 60.398 0 0 0 0 0.21486 1 11479 11479 3.5965 0.31518 1 + 53033 19204 35235 35256 51896 51896 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1653137207031 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 72.138 1 72.138 71.638 72.638 0 0 0 0 0.21486 1 13980 13980 6.7232 2.7788 1 + 53034 19204 35235 35256 51897 51897 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.17169189453125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 15.838 1 14.622 14.122 15.122 -1.2159 0 0 0 0.21486 1 2463 2463 3.5965 1.9439 1 + 53035 19204 35235 35256 51898 51898 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647033691406 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 63.485 1 60.487 59.987 60.987 -2.9975 0 0 0 0.21486 1 12268 12268 3.5965 1.9439 1 + 53036 19204 35235 35256 51899 51899 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16455078125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 73.233 1 69.923 69.423 70.423 -3.3107 0 0 0 0.21486 1 14276 14276 3.5965 1.9439 1 + 53037 19204 35235 35256 51900 51900 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1650390625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 156.57 1 151.79 151.29 152.29 -4.7885 0 0 0 0.21486 1 31136 31136 0.40072 0 1 + 53038 19204 35235 35256 51901 51901 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1706848144531 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 161.65 1 156.86 156.36 157.36 -4.7898 0 0 0 0.21486 1 32149 32149 0.40072 0 1 + 53039 19204 35235 35256 51902 51902 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1627502441406 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 42.784 1 40.133 39.633 40.633 -2.651 0 0 0 0.23626 1 7710 7710 0.62683 0.50396 1 + 53040 19204 35235 35256 51903 51903 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1623229980469 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 50.995 1 47.95 47.45 48.45 -3.0453 0 0 0 0.21486 1 9353 9353 3.5965 1.9439 1 + 53041 19204 35235 35256 51904 51904 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16485595703125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 139.01 1 134.06 133.56 134.56 -4.952 0 0 0 0.21486 1 26739 26739 0.40072 0 1 + 53042 19204 35235 35256 51905 51905 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1727600097656 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 176.57 1 171.7 171.2 172.2 -4.8739 0 0 0 0.21486 1 35128 35128 0.40072 0 1 + 53043 19204 35235 35256 51906 51906 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16363525390625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 21.473 1 19.751 19.251 20.251 -1.7211 0 0 0 0.23626 1 3359 3359 0.62683 0.50396 1 + 53044 19204 35235 35256 51907 51907 0.11265324321982462 VVPPLIYK 8 Unmodified _VVPPLIYK_ 0 0 0 REV__ENSG00000189280|ENST00000338513|GJB5 REV__ENSG00000189280|ENST00000338513|GJB5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2010803222656 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 177.75 1 172.85 172.35 173.35 -4.9088 0 0 0 0.21486 1 35451 35451 0.40072 0 1 + 53045 19204 35235 35256 51908 51908 0.11265324321982462 VVPPLLPL 8 Unmodified _VVPPLLPL_ 0 0 0 nc|ENSG00000163239|Q5VZ19|TDRD10 nc|ENSG00000163239|Q5VZ19|TDRD10 nc|ENSG00000163239|Q5VZ19|TDRD10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24517822265625 2 424.286214 846.557876 -0.35372 -0.00015008 0.17699 7.5094E-05 -0.17673 -7.4983E-05 424.28654125357514 55.177 0.75656 52.294 51.94 52.696 -2.8837 46 21 3 0 0 0 0.83271 1 10605 10605 2.8892 0 1 6769700 53046 12415 35236 35257 51909 51909 0.12845939293276842 VVPPLLPL 8 Unmodified _VVPPLLPL_ 0 0 0 nc|ENSG00000163239|Q5VZ19|TDRD10 nc|ENSG00000163239|Q5VZ19|TDRD10 nc|ENSG00000163239|Q5VZ19|TDRD10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.25177001953125 2 424.286214 846.557876 -0.29358 -0.00012456 0.080815 3.4289E-05 -0.21277 -9.0274E-05 424.28648157273875 55.458 1.2551 52.32 51.902 53.157 -3.1377 57 35 3 0 0 0 0.7545 2 10254 10249;10254 6.3541 3.4649 1 5996600 53047 12415 35236 35257 51910;51911 51911 0.12845939293276842 VVPPLLPL 8 Unmodified _VVPPLLPL_ 0 0 0 nc|ENSG00000163239|Q5VZ19|TDRD10 nc|ENSG00000163239|Q5VZ19|TDRD10 nc|ENSG00000163239|Q5VZ19|TDRD10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 424.286214 846.557876 0.033045 1.4021E-05 -0.15209 -6.453E-05 -0.11905 -5.051E-05 424.28627625713216 55.377 1.0815 52.242 51.887 52.969 -3.1352 -0.043294 -0.00017784 NaN 6.3541 55 30 3 NaN NaN NaN NaN 0 NaN NaN 0 7361500 53048 12415 35236 35257 0.12845939293276842 VVPRSSLL 8 Unmodified _VVPRSSLL_ 0 0 0 ENST00000533208.5_1_11:44097088-44098944:+|nuORF ENST00000533208.5_1_11:44097088-44098944:+|nuORF ENST00000533208.5_1_11:44097088-44098944:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2304992675781 2 435.774003 869.533452 -0.13493 -5.88E-05 0.2979 0.00012982 0.16296 7.1016E-05 435.77407531536073 22.709 0.35719 21.256 21.083 21.44 -1.4535 22 9 4 0 0 0 8448 1 3620 3620 0 0 1 1576000 53049 10991 35237 35258 51912 51912 0.09346679139775915 VVQQLSEA 8 Unmodified _VVQQLSEA_ 0 0 0 REV__CEP350|p.K1725Nfs*24|1|0.43|ENSG00000135837|chr1:180053928-180053928|A/-|frameshift_variant REV__CEP350|p.K1725Nfs*24|1|0.43|ENSG00000135837|chr1:180053928-180053928|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2273864746094 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 62.165 1 62.165 61.665 62.665 0 0 0 0 0.23782 1 11934 11934 0.62683 0 1 + 53050 13381 35238 35259 51913 51913 0.019015056264720442 VVRFPCKFTY 10 Unmodified _VVRFPCKFTY_ 0 0 0 ENST00000395002.6_1_4:89744147-89744438:-|nuORF ENST00000395002.6_1_4:89744147-89744438:-|nuORF ENST00000395002.6_1_4:89744147-89744438:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.77294921875 2 630.333901 1258.65325 NaN NaN NaN NaN NaN NaN NaN 46.897 1 44.031 43.531 44.531 -2.8666 0 0 0 0.22588 1 8546 8546 10.824 1.4408 1 53051 9422 35239 35260 51914 51914 0.03426924422024058 VVRKEEERRLE 11 Unmodified _VVRKEEERRLE_ 0 0 0 ENST00000496583.1_1_19:54694606-54694744:+|nuORF ENST00000496583.1_1_19:54694606-54694744:+|nuORF ENST00000496583.1_1_19:54694606-54694744:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2436828613281 3 481.607318 1441.80012 NaN NaN NaN NaN NaN NaN NaN 143.73 1 138.83 138.33 139.33 -4.8982 0 0 0 0.22632 1 27744 27744 1.4074 0.82212 1 53052 10581 35240 35261 51915 51915 0.09689692840629505 VVRLDIYAN 9 Unmodified _VVRLDIYAN_ 0 0 0 REV__ENSG00000204033|ENST00000372113|LRIT2 REV__ENSG00000204033|ENST00000372113|LRIT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2808837890625 2 531.800749 1061.58694 0.53029 0.00028201 -0.44502 -0.00023666 0.085272 4.5347E-05 531.800547308719 101.57 1.8843 101.57 101.08 102.97 0 139 53 4 0 0 0 0.25976 1 19939 19939 9.3867 0 1 301530000 + 53053 19509 35241 35262 51916 51916 0.058614318515992636 VVRLGKSG 8 Unmodified _VVRLGKSG_ 0 0 0 REV__WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant REV__WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 408.4922180175781 2 408.25852 814.502486 NaN NaN NaN NaN NaN NaN NaN 104.18 1 104.18 103.68 104.68 0 0 0 0 0.23837 1 20476 20476 0.62683 0.62683 1 + 53054 18597 35242 35263 51917 51917 0.08781525825531844 VVRLIHLRLK 10 Unmodified _VVRLIHLRLK_ 0 0 0 nc|ENSG00000140995|Q6ZN54-2|DEF8;nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8;nc|ENSG00000140995|Q6ZN54|DEF8 nc|ENSG00000140995|Q6ZN54-2|DEF8 nc|ENSG00000140995|Q6ZN54-2|DEF8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 416.26593017578125 3 416.287192 1245.83975 NaN NaN NaN NaN NaN NaN NaN 137.23 1 137.23 136.73 137.73 0 0 0 0 2.8426 1 27214 27214 0.043787 0 1 53055 4340 35243 35264 51918 51918 0.22665909372676651 VVRLIHLRLK 10 Unmodified _VVRLIHLRLK_ 0 0 0 nc|ENSG00000140995|Q6ZN54-2|DEF8;nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8;nc|ENSG00000140995|Q6ZN54|DEF8 nc|ENSG00000140995|Q6ZN54-2|DEF8 nc|ENSG00000140995|Q6ZN54-2|DEF8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 416.2852783203125 3 416.287192 1245.83975 NaN NaN NaN NaN NaN NaN NaN 137.71 1 137.71 137.21 138.21 0 0 0 0 2.8426 1 27318 27318 0.043787 0 1 53056 4340 35243 35264 51919 51919 0.22665909372676651 VVRLSARIRP 10 Unmodified _VVRLSARIRP_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 583.8775024414062 2 583.877656 1165.74076 NaN NaN NaN NaN NaN NaN NaN 10.923 1 10.923 10.423 11.423 0 0 0 0 0.22588 1 1406 1406 0 0 1 53057 1943 35244 35265 51920 51920 0.16451886407776328 VVRNEQVEI 9 Unmodified _VVRNEQVEI_ 0 0 0 ENSG00000125730|ENST00000245907|C3;C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant;CON__Q2UVX4 ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7902221679688 2 543.301113 1084.58767 0.20909 0.0001136 -0.15542 -8.4439E-05 0.05367 2.9159E-05 543.3009788447863 98.47 1.0792 94.514 93.957 95.037 -3.9564 83 31 4 0 0 0 0.029966 1 18970 18970 81.613 2.885 1 13748000 53058 3379 35245 35266 51921 51921 0.048762265006644157 VVRNTKKLH 9 Unmodified _VVRNTKKLH_ 0 0 0 REV__ENST00000487535.5_1_22:42177428-42177578:+|nuORF REV__ENST00000487535.5_1_22:42177428-42177578:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.78076171875 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.4686 1 9.4686 8.9686 9.9686 0 0 0 0 0.19631 1 1098 1098 0.20686 0 1 + 53059 22257 35246 35267 51922 51922 0.12892222108075657 VVRPPPPAE 9 Unmodified _VVRPPPPAE_ 0 0 0 REV__nc|ENSG00000204116|Q5VXU3-2|CHIC1 REV__nc|ENSG00000204116|Q5VXU3-2|CHIC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7786560058594 2 481.276909 960.539266 0.12047 5.7979E-05 0.047624 2.292E-05 0.16809 8.0899E-05 481.27687248266113 60.892 2.1052 57.523 56.391 58.497 -3.3694 85 59 2 0 0 0 0.46598 1 11348 11348 0.40827 0 1 1455300 + 53060 19513 35247 35268 51923 51923 0.05741777651417124 VVRRRRRRRRR 11 Unmodified _VVRRRRRRRRR_ 0 0 0 ENST00000356978.8_1_14:90863393-90866410:+|nuORF;ENST00000447653.7_1_14:90863393-90865345:+|nuORF ENST00000356978.8_1_14:90863393-90866410:+|nuORF ENST00000356978.8_1_14:90863393-90866410:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3873901367188 2 811.535972 1621.05739 NaN NaN NaN NaN NaN NaN NaN 154.69 1 154.69 154.19 155.19 0 0 0 0 0.23698 1 31004 31004 0 0 1 53061 8974 35248 35269 51924 51924 0.2717053713849964 VVSEGVPRI 9 Unmodified _VVSEGVPRI_ 0 0 0 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.723388671875 2 478.282192 954.549831 0.14583 6.975E-05 -0.5483 -0.00026224 -0.40246 -0.00019249 478.2818471247004 84.07 0.41797 80.16 80.074 80.492 -3.9093 13 11 2 0 0 0 0.74858 1 15998 15998 22.736 9.2284 1 1143800 53062 7045 35249 35270 51925 51925 0.07073760305854648 VVSGALVAFAF 11 Unmodified _VVSGALVAFAF_ 0 0 0 ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;CACNA1A|p.P2221Rfs*45|1|0.48|ENSG00000141837|chr19:13208879-13208879|A/-|frameshift_variant;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;CACNA1A|p.T1355Pfs*16|1|0.3|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;CACNA1A|p.N1375Tfs*54|1|0.21|ENSG00000141837|chr19:13261576-13261576|T/-|frameshift_variant;CACNA1A|p.Q1743Pfs*29|1|0.24|ENSG00000141837|chr19:13234944-13234945|-/A|frameshift_variant;ENSG00000148408|ENST00000371372|CACNA1B;CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B ENSG00000141837|ENST00000360228|CACNA1A ENSG00000141837|ENST00000360228|CACNA1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2767333984375 2 540.808042 1079.60153 0.30583 0.0001654 -1.267 -0.00068518 -0.96112 -0.00051978 541.3072193297135 135.86 0.17813 131.03 130.91 131.09 -4.8307 6 4 2 0 0 0 0.72464 1 26139 26139 10.074 1.4806 1 1553000 53063 4396 35250 35271 51926 51926 0.06491503999745873 VVSGGKTN 8 Unmodified _VVSGGKTN_ 0 0 0 nc|ENSG00000100767|O95428-2|PAPLN;ENST00000557061.5_1_14:73729237-73739369:+|nuORF nc|ENSG00000100767|O95428-2|PAPLN nc|ENSG00000100767|O95428-2|PAPLN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2110290527344 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 88.167 1 84.374 83.874 84.874 -3.7926 0 0 0 0.2396 1 17242 17242 0 0 1 53064 11249 35251 35272 51927 51927 0.018129672835129895 VVSGGKTN 8 Unmodified _VVSGGKTN_ 0 0 0 nc|ENSG00000100767|O95428-2|PAPLN;ENST00000557061.5_1_14:73729237-73739369:+|nuORF nc|ENSG00000100767|O95428-2|PAPLN nc|ENSG00000100767|O95428-2|PAPLN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.21044921875 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 110.46 1 105.97 105.47 106.47 -4.4915 0 0 0 0.2396 1 21203 21203 0.049793 0.049793 1 53065 11249 35251 35272 51928 51928 0.018129672835129895 VVSGGKTN 8 Unmodified _VVSGGKTN_ 0 0 0 nc|ENSG00000100767|O95428-2|PAPLN;ENST00000557061.5_1_14:73729237-73739369:+|nuORF nc|ENSG00000100767|O95428-2|PAPLN nc|ENSG00000100767|O95428-2|PAPLN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.20989990234375 2 381.211235 760.407917 NaN NaN NaN NaN NaN NaN NaN 101.72 1 97.699 97.199 98.199 -4.0212 0 0 0 0.2396 1 19546 19546 0 0 1 53066 11249 35251 35272 51929 51929 0.018129672835129895 VVSIRSVFETH 11 Unmodified _VVSIRSVFETH_ 0 0 0 REV__nc|ENSG00000160193|P57081-3|WDR4 REV__nc|ENSG00000160193|P57081-3|WDR4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2349853515625 3 425.234822 1272.68264 NaN NaN NaN NaN NaN NaN NaN 143.39 1 138.36 137.86 138.86 -5.0261 0 0 0 0.22862 1 27643 27643 4.7159 0 1 + 53067 17401 35252 35273 51930 51930 0.05720159971860994 VVSLKKQLLA 10 Unmodified _VVSLKKQLLA_ 0 0 0 REV__ENST00000519834.5_1_17:4855124-4857242:+|nuORF REV__ENST00000519834.5_1_17:4855124-4857242:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 366.9122314453125 3 366.91302 1097.71723 NaN NaN NaN NaN NaN NaN NaN 11.699 1 10.578 10.078 11.078 -1.1206 0 0 0 0.22588 1 1348 1348 0 0 1 + 53068 13814 35253 35274 51931 51931 0.17228027850615035 VVSPHGGL 8 Unmodified _VVSPHGGL_ 0 0 0 nc|ENSG00000130150|Q8NHP6-2|MOSPD2;ENSG00000130150|ENST00000380492|MOSPD2 nc|ENSG00000130150|Q8NHP6-2|MOSPD2 nc|ENSG00000130150|Q8NHP6-2|MOSPD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 383.2174987792969 2 383.216321 764.418088 NaN NaN NaN NaN NaN NaN NaN 48.872 1 46.003 45.503 46.503 -2.869 0 0 0 0.22684 1 9252 9252 0.68139 0 1 53069 3587 35254 35275 51932 51932 0.0264557500876208 VVSPPAPTDP 10 Unmodified _VVSPPAPTDP_ 0 0 0 ENSG00000167701|ENST00000394955|GPT;GPT|p.L474Wfs*11|1|0.29|ENSG00000167701|chr8:144506923-144506923|C/-|frameshift_variant ENSG00000167701|ENST00000394955|GPT ENSG00000167701|ENST00000394955|GPT MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2572326660156 2 490.258382 978.502212 0.065155 3.1943E-05 -0.064263 -3.1505E-05 0.0008921 4.3736E-07 490.2582587115382 44.68 0.42109 41.914 41.664 42.085 -2.7661 16 11 2 0 0 0 0.48672 1 8080 8080 25.399 0 1 819510 53070 5837 35255 35276 51933 51933 0.012100613149868877 VVSTLTQKLY 10 Unmodified _VVSTLTQKLY_ 0 0 0 REV__ENSG00000205301|ENST00000511113|MGAT4D REV__ENSG00000205301|ENST00000511113|MGAT4D MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3388061523438 2 576.337164 1150.65977 NaN NaN NaN NaN NaN NaN NaN 140.39 1 135.4 134.9 135.9 -4.9877 0 0 0 0.22588 1 27019 27019 6.7232 1.8262 1 + 53071 19585 35256 35277 51934 51934 0.09047140854363533 VVSVPLSTVPL 11 Unmodified _VVSVPLSTVPL_ 0 0 0 ENST00000381482.7_1_20:2126675-2127125:+|nuORF ENST00000381482.7_1_20:2126675-2127125:+|nuORF ENST00000381482.7_1_20:2126675-2127125:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 555.842041015625 2 555.842082 1109.66961 NaN NaN NaN NaN NaN NaN NaN 9.9694 1 9.9694 9.4694 10.469 0 0 0 0 0.23698 1 1210 1210 0 0 1 53072 9330 35257 35278 51935 51935 0.1191632885972922 VVTACLRLA 9 Unmodified _VVTACLRLA_ 0 0 0 REV__nc|ENSG00000166479|Q96JJ7-2|TMX3 REV__nc|ENSG00000166479|Q96JJ7-2|TMX3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.8557434082031 3 315.856517 944.547722 NaN NaN NaN NaN NaN NaN NaN 6.9866 1 5.9718 5.4718 6.4718 -1.0148 0 0 0 0.23508 1 521 521 0 0 1 + 53073 17854 35258 35279 51936 51936 0.07323008296373246 VVTATHTKG 9 Unmodified _VVTATHTKG_ 0 0 0 REV__ENSG00000113805|ENST00000263665|CNTN3 REV__ENSG00000113805|ENST00000263665|CNTN3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.20233154296875 3 305.174903 912.50288 NaN NaN NaN NaN NaN NaN NaN 128.34 1 123.6 123.1 124.1 -4.7408 0 0 0 0.23508 1 24694 24694 0.96228 0 1 + 53074 15352 35259 35280 51937 51937 0.04312900754700877 VVTGATSL 8 Unmodified _VVTGATSL_ 0 0 0 AMPD3|p.T121M|1|0.44|ENSG00000133805|chr11:10478666-10478666|C/T|missense_variant;nc|ENSG00000133805|Q01432-2|AMPD3;AMPD3|p.N217Tfs*42|1|0.13|ENSG00000133805|chr11:10484873-10484873|C/-|frameshift_variant;nc|ENSG00000133805|Q01432-3|AMPD3;ENSG00000133805|ENST00000396553|AMPD3;nc|ENSG00000133805|Q01432-5|AMPD3;nc|ENSG00000133805|Q01432-4|AMPD3 AMPD3|p.T121M|1|0.44|ENSG00000133805|chr11:10478666-10478666|C/T|missense_variant AMPD3|p.T121M|1|0.44|ENSG00000133805|chr11:10478666-10478666|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.5198669433594 2 374.215986 746.417419 NaN NaN NaN NaN NaN NaN NaN 93.488 1 89.497 88.997 89.997 -3.9907 0 0 0 0.2396 1 18312 18312 0.30703 0 1 53075 152 35260 35281 51938 51938 0.03406735569058128 VVTPKGVK 8 Unmodified _VVTPKGVK_ 0 0 0 RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant;ENSG00000254656|ENST00000649591|RTL1 RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant RTL1|p.Q1207Rfs*77|4|0.14|ENSG00000254656|chr14:100881170-100881170|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 414.269287109375 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 101.38 1 97.085 96.585 97.585 -4.297 0 0 0 0.22847 1 19402 19402 10.074 8.3317 1 53076 7926 35261 35282 51939 51939 0.10743580628093241 VVTTGGKI 8 Unmodified _VVTTGGKI_ 0 0 0 REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7123718261719 2 387.739628 773.464704 NaN NaN NaN NaN NaN NaN NaN 41.413 1 38.778 38.278 39.278 -2.6348 0 0 0 0.23899 1 7733 7733 1.3295 0 1 + 53077 14095 35262 35283 51940 51940 0.06891014840050502 VVVAKLLILP 10 Unmodified _VVVAKLLILP_ 0 0 0 REV__ENST00000372242.7_1_1:45101698-45101950:-|nuORF REV__ENST00000372242.7_1_1:45101698-45101950:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2688598632812 2 532.875728 1063.7369 0.47059 0.00025077 3.8936 0.0020748 4.3642 0.0023256 533.380662445892 105.61 0.21848 101.23 101.12 101.34 -4.3764 6 5 2 0 0 0 1.1347 1 20263 20263 0 0 1 1472500 + 53078 21020 35263 35284 51941 51941 0.2075840386139589 VVVALLLLFGL 11 Unmodified _VVVALLLLFGL_ 0 0 0 REV__ENSG00000170837|ENST00000304411|GPR27 REV__ENSG00000170837|ENST00000304411|GPR27 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 386.2615661621094 3 386.261649 1155.76312 NaN NaN NaN NaN NaN NaN NaN 176.9 1 172.03 171.53 172.53 -4.8739 0 0 0 0.23698 1 35198 35198 0 0 1 + 53079 18182 35264 35285 51942 51942 0.19146673032855688 VVVAVLLLS 9 Unmodified _VVVAVLLLS_ 0 0 0 REV__ATRNL1|p.A1249V|1|0.29|ENSG00000107518|chr10:115549487-115549487|C/T|missense_variant REV__ATRNL1|p.A1249V|1|0.29|ENSG00000107518|chr10:115549487-115549487|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 304.86468505859375 3 304.875795 911.605554 -0.1664 -5.0732E-05 0.35478 0.00010816 0.18837 5.7431E-05 304.8751820595953 178.75 1.5945 173.84 173.51 175.1 -4.9088 79 45 2 0 0 0 0.83871 1 35672 35672 0 0 1 160210 + 53080 13158 35265 35286 51943 51943 0.14621593493484397 VVVCSAAALH 10 Unmodified _VVVCSAAALH_ 0 0 0 REV__ENST00000427497.3_1_17:17135133-17140372:-|nuORF REV__ENST00000427497.3_1_17:17135133-17140372:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 323.8443908691406 3 323.844389 968.511337 NaN NaN NaN NaN NaN NaN NaN 6.937 1 5.8924 5.3924 6.3924 -1.0446 0 0 0 0.22588 1 546 546 0 0 1 + 53081 21581 35266 35287 51944 51944 0.025821313996630124 VVVDPIQSV 9 Unmodified _VVVDPIQSV_ 0 0 0 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7334899902344 2 478.276575 954.538597 -0.084168 -4.0255E-05 0.38076 0.00018211 0.2966 0.00014185 478.2766690155065 119.12 0.90426 119.12 118.68 119.58 0 57 25 3 0 0 0 0.00031371 4 23431 23431;23434;23450;23527 114.65 60.816 1 11312000 53082 2833 35267 35288 51945;51946;51947;51948 51945 0.059509382117198584 VVVDPIQSV 9 Unmodified _VVVDPIQSV_ 0 0 0 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7280578613281 2 478.276575 954.538597 0.18714 8.9504E-05 0.55597 0.00026591 0.74311 0.00035541 478.2765439119209 123.62 0.91975 119.05 118.56 119.48 -4.5757 79 25 4 0 0 0 0.58804 1 24289 24289 13.906 2.2658 1 15788000 53083 2833 35267 35288 51949 51949 0.059509382117198584 VVVDPIQSV 9 Unmodified _VVVDPIQSV_ 0 0 0 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7225036621094 2 478.276575 954.538597 0.41999 0.00020087 0.32111 0.00015358 0.7411 0.00035445 478.27646479825364 123.86 1.0594 119.13 118.57 119.63 -4.731 72 29 4 0 0 0 0.09143 1 23846 23846 58.679 20.503 1 9631300 53084 2833 35267 35288 51950 51950 0.059509382117198584 VVVDPIQSV 9 Unmodified _VVVDPIQSV_ 0 0 0 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7276611328125 2 478.276575 954.538597 0.27269 0.00013042 -0.053568 -2.562E-05 0.21912 0.0001048 478.276587005626 123.74 1.1842 119.15 118.55 119.73 -4.5926 84 33 4 0 0 0 0.00031371 2 23829 23738;23829 54.068 45.156 1 10900000 53085 2833 35267 35288 51951;51952 51952 0.059509382117198584 VVVGGCGG 8 Unmodified _VVVGGCGG_ 0 0 0 REV__ENST00000458477.6_1_12:120687796-120687913:-|nuORF REV__ENST00000458477.6_1_12:120687796-120687913:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 646.7357177734375 1 647.318122 646.310846 1.099 0.0007114 1.9521 0.0012636 3.0511 0.001975 647.3207931270689 162.96 0.20505 158.17 158.03 158.23 -4.7898 6 5 2 0 0 0 1.0268 1 32446 32446 0.79363 0 1 9530400 + 53086 21864 35268 35289 51953 51953 -0.026457181971068167 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7791748046875 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 11.008 1 10.104 9.6042 10.604 -0.90401 0 0 0 0.22632 1 1426 1426 0 0 1 + 53087 16316 35269 35290 51954 51954 0.12892222108098395 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7791748046875 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 11.016 1 10.112 9.6124 10.612 -0.90401 0 0 0 0.23698 1 1427 1427 0 0 1 + 53088 16316 35269 35290 51955 51955 0.12892222108098395 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7858276367188 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.2965 1 8.232 7.732 8.732 -1.0645 0 0 0 0.22632 1 984 984 0 0 1 + 53089 16316 35269 35290 51956 51956 0.12892222108098395 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7681884765625 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.3437 1 8.2793 7.7793 8.7793 -1.0645 0 0 0 0.23698 1 992 992 0 0 1 + 53090 16316 35269 35290 51957 51957 0.12892222108098395 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7918090820312 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 10.091 1 8.9979 8.4979 9.4979 -1.0936 0 0 0 0.23698 1 1125 1125 0 0 1 + 53091 16316 35269 35290 51958 51958 0.12892222108098395 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.767822265625 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 10.226 1 9.1321 8.6321 9.6321 -1.0936 0 0 0 0.23698 1 1151 1151 0 0 1 + 53092 16316 35269 35290 51959 51959 0.12892222108098395 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.766357421875 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 10.724 1 9.6304 9.1304 10.13 -1.0936 0 0 0 0.23698 1 1236 1236 0 0 1 + 53093 16316 35269 35290 51960 51960 0.12892222108098395 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7811889648438 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 11.496 1 10.367 9.8666 10.867 -1.1293 0 0 0 0.22632 1 1364 1364 0 0 1 + 53094 16316 35269 35290 51961 51961 0.12892222108098395 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7869262695312 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.0756 1 8.041 7.541 8.541 -1.0347 0 0 0 0.22632 1 898 898 0 0 1 + 53095 16316 35269 35290 51962 51962 0.12892222108098395 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7896118164062 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.5389 1 8.5043 8.0043 9.0043 -1.0347 0 0 0 0.23698 1 981 981 0 0 1 + 53096 16316 35269 35290 51963 51963 0.12892222108098395 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.779052734375 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.6981 1 8.6635 8.1635 9.1635 -1.0347 0 0 0 0.22632 1 1006 1006 0 0 1 + 53097 16316 35269 35290 51964 51964 0.12892222108098395 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7672119140625 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 9.7503 1 8.7157 8.2157 9.2157 -1.0347 0 0 0 0.23698 1 1013 1013 0 0 1 + 53098 16316 35269 35290 51965 51965 0.12892222108098395 VVVGVGVGPRR 11 Unmodified _VVVGVGVGPRR_ 0 0 0 REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant REV__NUDT15|p.N117Mfs*25|1|0.37|ENSG00000136159|chr13:48041105-48041105|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.8429565429688 2 547.843282 1093.67201 NaN NaN NaN NaN NaN NaN NaN 11.307 1 10.24 9.7404 10.74 -1.0664 0 0 0 0.22632 1 1275 1275 0 0 1 + 53099 16316 35269 35290 51966 51966 0.12892222108098395 VVVIFGLILN 10 Unmodified _VVVIFGLILN_ 0 0 0 REV__ENSG00000232070|ENST00000556585|TMEM253 REV__ENSG00000232070|ENST00000556585|TMEM253 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7833251953125 2 543.84971 1085.68487 NaN NaN NaN NaN NaN NaN NaN 10.033 1 9.2383 8.7383 9.7383 -0.79424 0 0 0 2.8426 1 1216 1216 0.043787 0 1 + 53100 19748 35270 35291 51967 51967 0.14545240447637298 VVVISHCESN 10 Unmodified _VVVISHCESN_ 0 0 0 nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12 nc|ENSG00000173809|Q587J7|TDRD12 nc|ENSG00000173809|Q587J7|TDRD12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7936401367188 2 543.766049 1085.51754 NaN NaN NaN NaN NaN NaN NaN 77.312 1 73.546 73.046 74.046 -3.7664 0 0 0 0.22559 1 14646 14646 17.113 3.2068 1 53101 12469 35271 35292 51968 51968 -0.021793951594645478 VVVKIGLLLLL 11 Unmodified _VVVKIGLLLLL_ 0 0 0 ENST00000581185.5_1_17:25628846-25628948:+|nuORF ENST00000581185.5_1_17:25628846-25628948:+|nuORF ENST00000581185.5_1_17:25628846-25628948:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2679443359375 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 68.53 1 68.53 68.03 69.03 0 0 0 0 0.22632 1 13253 13253 0 0 1 53102 11502 35272 35293 51969 51969 0.2543522147532258 VVVKIGLLLLL 11 Unmodified _VVVKIGLLLLL_ 0 0 0 ENST00000581185.5_1_17:25628846-25628948:+|nuORF ENST00000581185.5_1_17:25628846-25628948:+|nuORF ENST00000581185.5_1_17:25628846-25628948:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2559814453125 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 137.92 1 133.28 132.78 133.78 -4.6413 0 0 0 0.22632 1 27225 27225 0 0 1 53103 11502 35272 35293 51970 51970 0.2543522147532258 VVVKIGLLLLL 11 Unmodified _VVVKIGLLLLL_ 0 0 0 ENST00000581185.5_1_17:25628846-25628948:+|nuORF ENST00000581185.5_1_17:25628846-25628948:+|nuORF ENST00000581185.5_1_17:25628846-25628948:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.265869140625 2 590.425585 1178.83662 NaN NaN NaN NaN NaN NaN NaN 90.333 1 86.555 86.055 87.055 -3.7779 0 0 0 0.22632 1 17288 17288 0 0 1 53104 11502 35272 35293 51971 51971 0.2543522147532258 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650695800781 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 5.318 1 5.318 4.818 5.818 0 0 0 0 0.23508 1 260 260 0 0 1 + 53105 17408 35273 35294 51972 51972 0.11602251104329753 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1727294921875 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 6.9577 1 6.9577 6.4577 7.4577 0 0 0 0 0.23508 1 585 585 0 0 1 + 53106 17408 35273 35294 51973 51973 0.11602251104329753 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1648864746094 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 8.3753 1 8.3753 7.8753 8.8753 0 0 0 0 0.19635 1 872 872 0 0 1 + 53107 17408 35273 35294 51974 51974 0.11602251104329753 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1728820800781 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 9.2599 1 9.2599 8.7599 9.7599 0 0 0 0 0.23508 1 1052 1052 0 0 1 + 53108 17408 35273 35294 51975 51975 0.11602251104329753 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16986083984375 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 11.706 1 11.706 11.206 12.206 0 0 0 0 0.23508 1 1575 1575 0 0 1 + 53109 17408 35273 35294 51976 51976 0.11602251104329753 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16973876953125 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 14.93 1 14.93 14.43 15.43 0 0 0 0 0.19635 1 2251 2251 0 0 1 + 53110 17408 35273 35294 51977 51977 0.11602251104329753 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16510009765625 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 12.342 1 11.332 10.832 11.832 -1.0098 0 0 0 0.19635 1 1706 1706 0 0 1 + 53111 17408 35273 35294 51978 51978 0.11602251104329753 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2224426269531 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 129.84 1 125.2 124.7 125.7 -4.6349 0 0 0 0.23508 1 25587 25587 0 0 1 + 53112 17408 35273 35294 51979 51979 0.11602251104329753 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 179.66 1 174.88 174.38 175.38 -4.7898 0 0 0 0.23508 1 36755 36755 0 0 1 + 53113 17408 35273 35294 51980 51980 0.11602251104329753 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1698303222656 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 7.48 1 6.4354 5.9354 6.9354 -1.0446 0 0 0 0.23508 1 639 639 0 0 1 + 53114 17408 35273 35294 51981 51981 0.11602251104329753 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 8.3562 1 7.2917 6.7917 7.7917 -1.0645 0 0 0 0.23508 1 811 811 0 0 1 + 53115 17408 35273 35294 51982 51982 0.11602251104329753 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16363525390625 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 150.69 1 145.57 145.07 146.07 -5.1204 0 0 0 0.23508 1 29206 29206 0 0 1 + 53116 17408 35273 35294 51983 51983 0.11602251104329753 VVVLLCLVA 9 Unmodified _VVVLLCLVA_ 0 0 0 REV__nc|ENSG00000160223|O75144-3|ICOSLG REV__nc|ENSG00000160223|O75144-3|ICOSLG MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2383728027344 3 310.201513 927.582711 NaN NaN NaN NaN NaN NaN NaN 155.84 1 150.59 150.09 151.09 -5.2526 0 0 0 0.23508 1 30222 30222 0 0 1 + 53117 17408 35273 35294 51984 51984 0.11602251104329753 VVVLSQLTA 9 Unmodified _VVVLSQLTA_ 0 0 0 ENST00000499986.8_1_5:180743454-180748792:+|nuORF;ENST00000604354.1_1_5:180743383-180748792:+|nuORF ENST00000499986.8_1_5:180743454-180748792:+|nuORF ENST00000499986.8_1_5:180743454-180748792:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2500305175781 2 465.286943 928.559333 0.36459 0.00016964 -0.43146 -0.00020075 -0.066873 -3.1115E-05 465.2866725621116 72.346 0.79982 68.807 68.466 69.266 -3.5385 66 22 4 0 0 0 0.081765 1 13740 13740 61.357 2.6787 1 15139000 53118 10615 35274 35295 51985 51985 0.09219528591358994 VVVLTLIIIV 10 Unmodified _VVVLTLIIIV_ 0 0 0 CTNS|p.A212V|1|0.07|ENSG00000040531|chr17:3656749-3656749|C/T|missense_variant CTNS|p.A212V|1|0.07|ENSG00000040531|chr17:3656749-3656749|C/T|missense_variant CTNS|p.A212V|1|0.07|ENSG00000040531|chr17:3656749-3656749|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2722778320312 2 541.383386 1080.75222 NaN NaN NaN NaN NaN NaN NaN 172.95 1 172.95 172.45 173.45 0 0 0 0 0.22588 1 35731 35731 0 0 1 53119 749 35275 35296 51986 51986 0.21507270658571542 VVVLVIIIIL 10 Unmodified _VVVLVIIIIL_ 0 0 0 REV__ENSG00000166900|ENST00000337979|STX3 REV__ENSG00000166900|ENST00000337979|STX3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7848510742188 2 547.401579 1092.7886 NaN NaN NaN NaN NaN NaN NaN 175.66 1 170.76 170.26 171.26 -4.9008 0 0 0 2.8426 1 35012 35012 0 0 1 + 53120 17887 35276 35297 51987 51987 0.24592147555290467 VVVLVIIIIL 10 Unmodified _VVVLVIIIIL_ 0 0 0 REV__ENSG00000166900|ENST00000337979|STX3 REV__ENSG00000166900|ENST00000337979|STX3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7826538085938 2 547.401579 1092.7886 NaN NaN NaN NaN NaN NaN NaN 177.47 1 172.56 172.06 173.06 -4.9088 0 0 0 2.8426 1 35393 35393 0 0 1 + 53121 17887 35276 35297 51988 51988 0.24592147555290467 VVVLVIIIIL 10 Unmodified _VVVLVIIIIL_ 0 0 0 REV__ENSG00000166900|ENST00000337979|STX3 REV__ENSG00000166900|ENST00000337979|STX3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7826538085938 2 547.401579 1092.7886 NaN NaN NaN NaN NaN NaN NaN 177.49 1 172.58 172.08 173.08 -4.9088 0 0 0 0.22588 1 35396 35396 0 0 1 + 53122 17887 35276 35297 51989 51989 0.24592147555290467 VVVLVKPV 8 Unmodified _VVVLVKPV_ 0 0 0 REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant REV__COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.79815673828125 2 426.799489 851.584425 NaN NaN NaN NaN NaN NaN NaN 7.3624 1 6.3177 5.8177 6.8177 -1.0446 0 0 0 0.23899 1 621 621 1.3295 0 1 + 53123 13475 35277 35298 51990 51990 0.15269628184614703 VVVRLILL 8 Unmodified _VVVRLILL_ 0 0 0 ADAMTS12|p.I293V|1|0.31|ENSG00000151388|chr5:33683056-33683056|T/C|missense_variant;nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12 ADAMTS12|p.I293V|1|0.31|ENSG00000151388|chr5:33683056-33683056|T/C|missense_variant ADAMTS12|p.I293V|1|0.31|ENSG00000151388|chr5:33683056-33683056|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.7762145996094 3 308.891668 923.653173 NaN NaN NaN NaN NaN NaN NaN 24.373 1 24.373 23.873 24.873 0 0 0 0 0.21486 1 4197 4197 0 0 1 53124 61 35278 35299 51991 51991 0.18829292484338112 VVVRLILL 8 Unmodified _VVVRLILL_ 0 0 0 ADAMTS12|p.I293V|1|0.31|ENSG00000151388|chr5:33683056-33683056|T/C|missense_variant;nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12 ADAMTS12|p.I293V|1|0.31|ENSG00000151388|chr5:33683056-33683056|T/C|missense_variant ADAMTS12|p.I293V|1|0.31|ENSG00000151388|chr5:33683056-33683056|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.8923645019531 3 308.891668 923.653173 NaN NaN NaN NaN NaN NaN NaN 36.178 1 36.178 35.678 36.678 0 0 0 0 0.2396 1 6665 6665 0 0 1 53125 61 35278 35299 51992 51992 0.18829292484338112 VVVVILLRKL 10 Unmodified _VVVVILLRKL_ 0 0 0 REV__ENSG00000168484|ENST00000679463|SFTPC REV__ENSG00000168484|ENST00000679463|SFTPC MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3267822265625 2 576.415552 1150.81655 NaN NaN NaN NaN NaN NaN NaN 105.21 1 105.21 104.71 105.71 0 0 0 0 2.8426 1 20680 20680 0 0 1 + 53126 18031 35279 35300 51993 51993 0.24717470535370012 VVVVILLRKL 10 Unmodified _VVVVILLRKL_ 0 0 0 REV__ENSG00000168484|ENST00000679463|SFTPC REV__ENSG00000168484|ENST00000679463|SFTPC MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3218994140625 2 576.415552 1150.81655 NaN NaN NaN NaN NaN NaN NaN 149.35 1 144.15 143.65 144.65 -5.1994 0 0 0 2.8426 1 28931 28931 0 0 1 + 53127 18031 35279 35300 51994 51994 0.24717470535370012 VVVYDVRED 9 Unmodified _VVVYDVRED_ 0 0 0 REV__ENSG00000109458|ENST00000262994|GAB1 REV__ENSG00000109458|ENST00000262994|GAB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.780517578125 2 547.279846 1092.54514 0.49252 0.00026955 -1.1135 -0.0006094 -0.62099 -0.00033986 547.2795724746826 29.06 0.49012 27.064 26.829 27.319 -1.9962 27 13 3 0 0 0 0.52151 1 4942 4942 1.2148 0 1 655030 + 53128 15163 35280 35301 51995 51995 0.002568313724395921 VVWRPRRR 8 Unmodified _VVWRPRRR_ 0 0 0 ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000368202.4_1_6:128840173-128841710:-|nuORF ENST00000524481.5_1_6:128321419-128841710:-|nuORF ENST00000524481.5_1_6:128321419-128841710:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 562.8490600585938 2 562.849233 1123.68391 NaN NaN NaN NaN NaN NaN NaN 11.767 1 10.863 10.363 11.363 -0.90401 0 0 0 0.21486 1 1584 1584 0 0 1 53129 10881 35281 35302 51996 51996 0.12701883641921086 VVYKSEPGT 9 Unmodified _VVYKSEPGT_ 0 0 0 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 ENSG00000162383|ENST00000371494|SLC1A7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26708984375 2 490.258382 978.502212 0.077007 3.7753E-05 0.18794 9.2141E-05 0.26495 0.00012989 490.25839915883455 107.09 0.8261 102.68 102.27 103.09 -4.4121 53 23 3 0 0 0 0.50943 1 20625 20625 0.40827 0.2854 1 2844600 53130 5326 35282 35303 51997 51997 0.012100613150096251 VVYWPVGLL 9 Unmodified _VVYWPVGLL_ 0 0 0 REV__tr|U7T2A3|U7T2A3_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00607PE=3SV=1 REV__tr|U7T2A3|U7T2A3_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00607PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.691162109375 2 523.307678 1044.6008 0.25566 0.00013379 -2.9966 -0.0015681 -2.7409 -0.0014344 523.8063053059489 133.7 0.145 128.89 128.81 128.95 -4.8175 5 3 2 0 0 0 0.80737 1 25726 25726 9.3474 5.0182 1 495940 + 53131 25317 35283 35304 51998 51998 0.0802870935071951 VWADREEY 8 Unmodified _VWADREEY_ 0 0 0 REV__nc|ENSG00000157985|Q9UPQ3-2|AGAP1 REV__nc|ENSG00000157985|Q9UPQ3-2|AGAP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.0489196777344 3 356.497935 1066.47197 0.31567 0.00011253 -0.19192 -6.842E-05 0.12374 4.4114E-05 356.49795368191377 30.802 0.17253 28.858 28.789 28.961 -1.9446 6 4 2 0 0 0 1.0262 1 5314 5314 4.3292 4.3292 1 332530 + 53132 17316 35284 35305 51999 51999 -0.05860297350182009 VWAENGRFY 9 Unmodified _VWAENGRFY_ 0 0 0 REV__PRAMEF17|p.T389Afs*9|1|0.05|ENSG00000204479|chr1:13392241-13392242|-/GCTTGGGT|frameshift_variant REV__PRAMEF17|p.T389Afs*9|1|0.05|ENSG00000204479|chr1:13392241-13392242|-/GCTTGGGT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2124328613281 3 381.185691 1140.53524 -0.080753 -3.0782E-05 -0.54666 -0.00020838 -0.62742 -0.00023916 381.1855405778261 27.87 0.4796 27.87 27.562 28.042 0 28 13 3 0 0 0 0.72108 1 4865 4865 5.2969 1.4206 1 2345600 + 53133 24503 35285 35306 52000 52000 -0.029403118422806074 VWAGHTVE 8 Unmodified _VWAGHTVE_ 0 0 0 DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant;DSCAML1|p.P2046Qfs*45|1|0.5|ENSG00000177103|chr11:117428533-117428533|G/-|frameshift_variant;ENSG00000177103|ENST00000651296|DSCAML1;DSCAML1|p.P1274Lfs*7|2|0.3|ENSG00000177103|chr11:117450616-117450616|G/-|frameshift_variant;DSCAML1|p.T498Rfs*33|1|0.45|ENSG00000177103|chr11:117518665-117518665|G/-|frameshift_variant;DSCAML1|p.T498Cfs*43|1|0.07|ENSG00000177103|chr11:117518665-117518666|-/GGGGGCGGGGCGCCCTTGGCCGCACACAA|frameshift_variant;DSCAML1|p.P778Hfs*36|1|0.26|ENSG00000177103|chr11:117504953-117504953|G/-|frameshift_variant;DSCAML1|p.M1051Wfs*8|3|0.26|ENSG00000177103|chr11:117469970-117469970|C/-|frameshift_variant DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 300.15191650390625 3 300.152099 897.434466 NaN NaN NaN NaN NaN NaN NaN 111.41 1 107.18 106.68 107.68 -4.2289 0 0 0 0.21486 1 21445 21445 1.6526 0 1 53134 893 35286 35307 52001 52001 -0.018353438251438092 VWAHDESL 8 Unmodified _VWAHDESL_ 0 0 0 REV__MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant REV__MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72552490234375 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 151.05 1 146.29 145.79 146.79 -4.7523 0 0 0 0.20568 1 30006 30006 20.871 3.9289 1 + 53135 16182 35287 35308 52002 52002 -0.03955665033333844 VWEFASAK 8 Unmodified _VWEFASAK_ 0 0 0 REV__ENST00000356387.6_1_7:102087640-102088213:+|nuORF REV__ENST00000356387.6_1_7:102087640-102088213:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1617431640625 3 313.164116 936.470518 NaN NaN NaN NaN NaN NaN NaN 18.924 1 17.288 16.788 17.788 -1.6351 0 0 0 0.21486 1 2827 2827 1.6526 0.17072 1 + 53136 20811 35288 35309 52003 52003 -0.00025886648290907033 VWELNEDY 8 Unmodified _VWELNEDY_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.0490417480469 3 356.49419 1066.46074 -0.26098 -9.3039E-05 0.21094 7.5199E-05 -0.050043 -1.784E-05 356.4942722237441 33.557 0.34685 33.557 33.307 33.654 0 10 9 2 0 0 0 1.0262 1 6090 6090 0.45834 0.057624 1 611900 + 53137 19081 35289 35310 52004 52004 -0.06983119444339536 VWESGAANSQS 11 Unmodified _VWESGAANSQS_ 0 0 0 nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;TNRC6A|p.E1066Sfs*20|1|0.3|ENSG00000090905|chr16:24793488-24793488|G/-|frameshift_variant nc|ENSG00000090905|Q8NDV7-2|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 379.2093505859375 3 379.171999 1134.49417 NaN NaN NaN NaN NaN NaN NaN 127.88 1 123.08 122.58 123.58 -4.8035 0 0 0 0.23698 1 24546 24546 1.4551 0.38366 1 53138 1795 35290 35311 52005 52005 -0.06770117672431297 VWGFFVFVFVF 11 Unmodified _VWGFFVFVFVF_ 0 0 0 ENST00000233813.4_1_2:217560055-217560226:-|nuORF ENST00000233813.4_1_2:217560055-217560226:-|nuORF ENST00000233813.4_1_2:217560055-217560226:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.24981689453125 3 465.249632 1392.72707 NaN NaN NaN NaN NaN NaN NaN 72.017 1 68.389 67.889 68.889 -3.6275 0 0 0 0.22632 1 13593 13593 1.4551 0 1 53139 8166 35291 35312 52006 52006 0.0464121585596331 VWGFKEKRTEV 11 Unmodified _VWGFKEKRTEV_ 0 0 0 AKT1S1|p.A200V|1|0.41|ENSG00000204673|chr19:49871575-49871575|G/A|missense_variant AKT1S1|p.A200V|1|0.41|ENSG00000204673|chr19:49871575-49871575|G/A|missense_variant AKT1S1|p.A200V|1|0.41|ENSG00000204673|chr19:49871575-49871575|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23919677734375 3 460.254105 1377.74048 NaN NaN NaN NaN NaN NaN NaN 80.703 1 77.015 76.515 77.515 -3.6879 0 0 0 0.22632 1 15386 15386 3.0723 0 1 53140 114 35292 35313 52007 52007 0.0667242189724675 VWHMSLETLTY 11 Unmodified _VWHMSLETLTY_ 0 0 0 REV__nc|ENSG00000211950|A0A0C4DH33|IGHV1-24 REV__nc|ENSG00000211950|A0A0C4DH33|IGHV1-24 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2469482421875 3 460.560317 1378.65912 -0.57953 -0.00026691 0.30201 0.00013909 -0.27752 -0.00012781 460.56045268183567 15.867 0.32016 14.651 14.514 14.834 -1.2159 25 8 5 0 0 0 0.96225 1 2491 2491 0.45452 0 1 2780400 + 53141 24260 35293 35314 52008 52008 -0.015060218569715289 VWKRLRPPRV 10 Unmodified _VWKRLRPPRV_ 0 0 0 REV__ENST00000448973.6_1_16:685482-685995:-|nuORF REV__ENST00000448973.6_1_16:685482-685995:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 653.9488525390625 2 653.914573 1305.81459 NaN NaN NaN NaN NaN NaN NaN 177.11 1 172.24 171.74 172.74 -4.8739 0 0 0 2.8426 1 35244 35244 0.043787 0.042406 1 + 53142 21783 35294 35315 52009 52009 0.173918545701099 VWKRRQQDYYR 11 Unmodified _VWKRRQQDYYR_ 0 0 0 ENST00000429181.6_2_X:197873-198209:+|nuORF;ENST00000399012.6_3_X:193002-198209:+|nuORF;ENST00000381657.7_3_X:198068-198212:+|nuORF ENST00000429181.6_2_X:197873-198209:+|nuORF ENST00000429181.6_2_X:197873-198209:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2844848632812 3 533.283057 1596.82734 -0.069327 -3.6971E-05 2.9772 0.0015877 2.9079 0.0015507 533.2850507266468 70.783 0.17442 70.783 70.66 70.834 0 5 4 2 0 0 0 0.96225 1 13709 13709 0.45452 0.45452 1 819640 53143 9333 35295 35316 52010 52010 0.05280221171710764 VWPCFVFCMLK 11 Unmodified _VWPCFVFCMLK_ 0 0 0 REV__ENST00000551189.1_1_12:49231126-49231468:-|nuORF REV__ENST00000551189.1_1_12:49231126-49231468:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2353210449219 3 458.225336 1371.65418 -0.50172 -0.0002299 -0.49971 -0.00022898 -1.0014 -0.00045888 458.2249675367628 16.369 0.38078 15.153 14.974 15.355 -1.2159 16 10 2 0 0 0 0.80759 1 2591 2591 2.6312 0 1 375370 + 53144 22903 35296 35317 52011 52011 -0.01678320524956689 VWQNLPAT 8 Unmodified _VWQNLPAT_ 0 0 0 REV__ENSG00000146830|ENST00000678049|GIGYF1 REV__ENSG00000146830|ENST00000678049|GIGYF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2508850097656 2 464.747985 927.481417 0.27312 0.00012693 -2.6634 -0.0012378 -2.3903 -0.0011109 464.74553352787336 39.536 0.83239 39.536 39.166 39.998 0 49 23 3 0 0 0 8448 1 7287 7287 4.2837 0 1 3642100 + 53145 16902 35297 35318 52012 52012 0.01477515725991907 VWRKRLLRRWV 11 Unmodified _VWRKRLLRRWV_ 0 0 0 REV__ENSG00000111412|ENST00000261318|SPRING1 REV__ENSG00000111412|ENST00000261318|SPRING1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6917114257812 3 523.331794 1566.97355 0.36749 0.00019232 -0.94271 -0.00049335 -0.57523 -0.00030103 523.3315910734002 146.09 0.34442 141.09 140.98 141.33 -5 12 9 2 0 0 0 0.89134 1 28298 28298 0.094841 0 1 7476500 + 53146 15243 35298 35319 52013 52013 0.21274568198214183 VWRLARLLIL 10 Unmodified _VWRLARLLIL_ 0 0 0 ENST00000419038.2_1_2:63870633-63870933:-|nuORF ENST00000419038.2_1_2:63870633-63870933:-|nuORF ENST00000419038.2_1_2:63870633-63870933:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 418.2799987792969 3 418.279926 1251.81795 NaN NaN NaN NaN NaN NaN NaN 140.53 1 135.88 135.38 136.38 -4.6493 0 0 0 0.22588 1 27746 27746 0.77653 0.14971 1 53147 9648 35299 35320 52014 52014 0.20211104624127074 VWSDETQL 8 Unmodified _VWSDETQL_ 0 0 0 REV__ENSG00000164967|ENST00000378959|RPP25L REV__ENSG00000164967|ENST00000378959|RPP25L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2680969238281 2 489.232364 976.450176 0.53186 0.0002602 -0.033325 -1.6304E-05 0.49853 0.0002439 489.23221909888747 103.87 1.619 103.87 102.86 104.48 0 96 46 3 0 0 0 8448 1 20332 20332 3.5871 0 1 12099000 + 53148 17731 35300 35321 52015 52015 -0.03899102098750973 VWSPGAIW 8 Unmodified _VWSPGAIW_ 0 0 0 REV__ENST00000565633.1_1_16:88729753-88737893:+|nuORF REV__ENST00000565633.1_1_16:88729753-88737893:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2308349609375 2 458.239796 914.465038 -0.20427 -9.3602E-05 -0.47243 -0.00021649 -0.6767 -0.00031009 458.239289981689 57.586 0.94844 54.691 54.27 55.219 -2.8944 47 26 3 0 0 0 8448 1 11070 11070 10.074 1.161 1 1166400 + 53149 23074 35301 35322 52016 52016 0.004384345599078188 VWVLPLII 8 Unmodified _VWVLPLII_ 0 0 0 nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 477.20123291015625 2 476.815139 951.615725 -0.062123 -2.9621E-05 0.27621 0.0001317 0.21409 0.00010208 476.8151805647184 97.386 0.69075 97.386 97.119 97.81 0 30 19 2 0 0 0 8448 1 19068 19068 2.084 1.9611 1 2762300 53150 1428 35302 35323 52017 52017 0.13798201218708073 VWVLPLII 8 Unmodified _VWVLPLII_ 0 0 0 nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 476.815139 951.615725 0.0080653 3.8457E-06 0.34995 0.00016686 0.35801 0.0001707 476.8152450827592 101.63 0.61899 97.474 97.192 97.811 -4.1594 0.052277 0.00017491 NaN 2.084 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2199600 53151 1428 35302 35323 0.13798201218708073 VWVLPLII 8 Unmodified _VWVLPLII_ 0 0 0 nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 476.815139 951.615725 0.30026 0.00014317 -0.066672 -3.179E-05 0.23359 0.00011138 476.81504239345895 101.74 0.61916 97.418 97.021 97.64 -4.3208 -0.0041041 -0.00022239 NaN 2.084 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2529600 53152 1428 35302 35323 0.13798201218708073 VWVLPLII 8 Unmodified _VWVLPLII_ 0 0 0 nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 476.815139 951.615725 0.42919 0.00020464 -0.022377 -1.067E-05 0.40681 0.00019397 476.81506907939564 101.4 0.66183 97.41 97.136 97.798 -3.9895 -0.011683 -0.00018015 NaN 2.084 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1634300 53153 1428 35302 35323 0.13798201218708073 VWVPRSSM 8 Unmodified _VWVPRSSM_ 0 0 0 ENST00000441493.6_1_22:18385495-18387514:-|nuORF ENST00000441493.6_1_22:18385495-18387514:-|nuORF ENST00000441493.6_1_22:18385495-18387514:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 321.1689147949219 3 321.168984 960.485122 NaN NaN NaN NaN NaN NaN NaN 131.64 1 126.84 126.34 127.34 -4.799 0 0 0 0.21486 1 25344 25344 0.45834 0 1 53154 9892 35303 35324 52018 52018 0.003298622282159158 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1643981933594 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 113.95 1 113.95 113.45 114.45 0 0 0 0 0.21486 1 22409 22409 0.40072 0 1 53155 2123 35304 35325 52019 52019 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651916503906 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 115.5 1 115.5 115 116 0 0 0 0 0.2386 1 22730 22730 0.12286 0 1 53156 2123 35304 35325 52020 52020 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1645812988281 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 116.26 1 116.26 115.76 116.76 0 0 0 0 0.21486 1 22892 22892 1.6526 0 1 53157 2123 35304 35325 52021 52021 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.164794921875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 117.32 1 117.32 116.82 117.82 0 0 0 0 0.2386 1 23109 23109 0.12286 0 1 53158 2123 35304 35325 52022 52022 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 118.02 1 118.02 117.52 118.52 0 0 0 0 0.2386 1 23245 23245 0.12286 0 1 53159 2123 35304 35325 52023 52023 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 120.08 1 120.08 119.58 120.58 0 0 0 0 0.21486 1 23666 23666 1.6526 0 1 53160 2123 35304 35325 52024 52024 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1652526855469 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 127.9 1 127.9 127.4 128.4 0 0 0 0 0.21486 1 25252 25252 1.6526 0 1 53161 2123 35304 35325 52025 52025 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16998291015625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 128.93 1 128.93 128.43 129.43 0 0 0 0 0.21486 1 25463 25463 1.6526 0 1 53162 2123 35304 35325 52026 52026 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2378234863281 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 129.59 1 129.59 129.09 130.09 0 0 0 0 0.21486 1 25605 25605 1.6526 0 1 53163 2123 35304 35325 52027 52027 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1644287109375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 130.13 1 130.13 129.63 130.63 0 0 0 0 0.21486 1 25714 25714 1.6526 0 1 53164 2123 35304 35325 52028 52028 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1651916503906 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 148.62 1 148.62 148.12 149.12 0 0 0 0 0.21486 1 29744 29744 0.40072 0 1 53165 2123 35304 35325 52029 52029 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16510009765625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 122.9 1 118.32 117.82 118.82 -4.5757 0 0 0 0.21486 1 24229 24229 1.6526 0 1 53166 2123 35304 35325 52030 52030 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16461181640625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 123.18 1 118.61 118.11 119.11 -4.5757 0 0 0 0.21486 1 24283 24283 1.6526 0 1 53167 2123 35304 35325 52031 52031 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.17279052734375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 123.83 1 119.25 118.75 119.75 -4.5757 0 0 0 0.21486 1 24413 24413 1.6526 0 1 53168 2123 35304 35325 52032 52032 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 124.03 1 119.46 118.96 119.96 -4.5757 0 0 0 0.21486 1 24455 24455 1.6526 0 1 53169 2123 35304 35325 52033 52033 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.17254638671875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 124.1 1 119.52 119.02 120.02 -4.5757 0 0 0 0.21486 1 24468 24468 1.6526 0 1 53170 2123 35304 35325 52034 52034 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2303161621094 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 130.96 1 126.33 125.83 126.83 -4.6359 0 0 0 0.21486 1 25808 25808 0.40072 0 1 53171 2123 35304 35325 52035 52035 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1647644042969 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 121.79 1 117.1 116.6 117.6 -4.6873 0 0 0 0.21486 1 23380 23380 1.6526 0 1 53172 2123 35304 35325 52036 52036 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1360168457031 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 141.63 1 136.64 136.14 137.14 -4.9877 0 0 0 0.21486 1 27276 27276 1.6526 0 1 53173 2123 35304 35325 52037 52037 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.230712890625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 142.57 1 137.54 137.04 138.04 -5.0261 0 0 0 0.21486 1 27482 27482 0.40072 0 1 53174 2123 35304 35325 52038 52038 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16485595703125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 127.8 1 123.1 122.6 123.6 -4.6998 0 0 0 0.2396 1 24587 24587 0.12286 0 1 53175 2123 35304 35325 52039 52039 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 131.43 1 126.66 126.16 127.16 -4.7725 0 0 0 0.2386 1 25300 25300 0.12286 0 1 53176 2123 35304 35325 52040 52040 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 131.46 1 126.69 126.19 127.19 -4.7725 0 0 0 0.21486 1 25305 25305 1.6526 0 1 53177 2123 35304 35325 52041 52041 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.17218017578125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 131.53 1 126.74 126.24 127.24 -4.7926 0 0 0 0.21486 1 25320 25320 1.6526 0 1 53178 2123 35304 35325 52042 52042 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.23736572265625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 142.61 1 137.72 137.22 138.22 -4.8982 0 0 0 0.21486 1 27517 27517 0.40072 0 1 53179 2123 35304 35325 52043 52043 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 142.76 1 137.86 137.36 138.36 -4.8982 0 0 0 0.2386 1 27549 27549 0.12286 0 1 53180 2123 35304 35325 52044 52044 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 142.78 1 137.88 137.38 138.38 -4.8982 0 0 0 0.21486 1 27553 27553 1.6526 0 1 53181 2123 35304 35325 52045 52045 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2425842285156 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 143 1 138.1 137.6 138.6 -4.8982 0 0 0 0.21486 1 27599 27599 0.40072 0 1 53182 2123 35304 35325 52046 52046 0.11265324322005199 VWVVLLSL 8 Unmodified _VWVVLLSL_ 0 0 0 nc|ENSG00000102312|Q9H237-3|PORCN;ENSG00000102312|ENST00000326194|PORCN;nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENST00000491243.5_1_X:48367421-48370328:+|nuORF;PORCN|p.L221Sfs*19|1|0.2|ENSG00000102312|chrX:48512690-48512690|C/-|frameshift_variant nc|ENSG00000102312|Q9H237-3|PORCN nc|ENSG00000102312|Q9H237-3|PORCN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1728210449219 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 153.51 1 148.29 147.79 148.79 -5.2209 0 0 0 0.21486 1 29754 29754 0.40072 0 1 53183 2123 35304 35325 52047 52047 0.11265324322005199 VWVVTQAYI 9 Unmodified _VWVVTQAYI_ 0 0 0 REV__nc|ENSG00000167608|Q7Z404-1|TMC4 REV__nc|ENSG00000167608|Q7Z404-1|TMC4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2015686035156 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 80.595 1 80.595 80.095 81.095 0 0 0 0 0.23508 1 15691 15691 2.9952 0.26005 1 + 53184 17943 35305 35326 52048 52048 0.05019217482708882 VWVVYIYRSRK 11 Unmodified _VWVVYIYRSRK_ 0 0 0 REV__ACER1|p.N116Efs*52|1|0.12|ENSG00000167769|chr19:6312153-6312154|-/C|frameshift_variant REV__ACER1|p.N116Efs*52|1|0.12|ENSG00000167769|chr19:6312153-6312154|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2685852050781 3 490.285628 1467.83505 NaN NaN NaN NaN NaN NaN NaN 73.296 1 69.62 69.12 70.12 -3.6764 0 0 0 0.22632 1 13851 13851 0.50596 0 1 + 53185 12915 35306 35327 52049 52049 0.11984980439251558 VWWFYPFFLFL 11 Unmodified _VWWFYPFFLFL_ 0 0 0 ENST00000262646.11_1_8:61534433-61534553:+|nuORF ENST00000262646.11_1_8:61534433-61534553:+|nuORF ENST00000262646.11_1_8:61534433-61534553:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2713012695312 3 522.272437 1563.79548 NaN NaN NaN NaN NaN NaN NaN 57.683 1 54.788 54.288 55.288 -2.8946 0 0 0 0.22632 1 11069 11069 0.0059557 0 1 53186 8315 35307 35328 52050 52050 0.0361346043582671 VWWFYPFFLFL 11 Unmodified _VWWFYPFFLFL_ 0 0 0 ENST00000262646.11_1_8:61534433-61534553:+|nuORF ENST00000262646.11_1_8:61534433-61534553:+|nuORF ENST00000262646.11_1_8:61534433-61534553:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2719116210938 3 522.272437 1563.79548 NaN NaN NaN NaN NaN NaN NaN 86.371 1 82.643 82.143 83.143 -3.7289 0 0 0 0.22632 1 16515 16515 0.50596 0 1 53187 8315 35307 35328 52051 52051 0.0361346043582671 VYAALGILQGF 11 Unmodified _VYAALGILQGF_ 0 0 0 ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3 ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENST00000502426.5_1_17:48736553-48755440:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.320556640625 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 150.52 1 145.4 144.9 145.9 -5.1204 0 0 0 0.22632 1 29172 29172 1.4074 0 1 53188 2497 35308 35329 52052 52052 0.06935175545504535 VYAMVFTV 8 Unmodified _VYAMVFTV_ 0 0 0 ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8 ENSG00000006071|ENST00000389817|ABCC8 ENSG00000006071|ENST00000389817|ABCC8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2445068359375 2 465.243689 928.472826 NaN NaN NaN NaN NaN NaN NaN 162.16 1 157.37 156.87 157.87 -4.7898 0 0 0 0.21486 1 32258 32258 10.183 2.8942 1 53189 1004 35309 35330 52053 52053 0.005728257651639979 VYAMVFTV 8 Unmodified _VYAMVFTV_ 0 0 0 ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8 ENSG00000006071|ENST00000389817|ABCC8 ENSG00000006071|ENST00000389817|ABCC8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2457275390625 2 465.243689 928.472826 NaN NaN NaN NaN NaN NaN NaN 154.05 1 148.79 148.29 149.29 -5.2669 0 0 0 0.21486 1 29871 29871 10.183 0 1 53190 1004 35309 35330 52054 52054 0.005728257651639979 VYCLCQDL 8 Unmodified _VYCLCQDL_ 0 0 0 REV__ENSG00000206190|ENST00000555815|ATP10A REV__ENSG00000206190|ENST00000555815|ATP10A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7414855957031 2 478.714439 955.414325 NaN NaN NaN NaN NaN NaN NaN 103.89 1 99.544 99.044 100.04 -4.346 0 0 0 0.19342 1 19902 19902 26.884 6.0124 1 + 53191 19617 35310 35331 52055 52055 -0.0651659887163305 VYDDMAFRY 9 Unmodified _VYDDMAFRY_ 0 0 0 nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1 nc|ENSG00000104853|O96005-3|CLPTM1 nc|ENSG00000104853|O96005-3|CLPTM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2564697265625 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 133.43 1 128.79 128.29 129.29 -4.6399 0 0 0 0.23508 1 26306 26306 12.532 3.9383 1 53192 2261 35311 35332 52056 52056 -0.0754679753374603 VYDDMAFRY 9 Unmodified _VYDDMAFRY_ 0 0 0 nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1 nc|ENSG00000104853|O96005-3|CLPTM1 nc|ENSG00000104853|O96005-3|CLPTM1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2603149414062 2 590.260599 1178.50665 NaN NaN NaN NaN NaN NaN NaN 133.45 1 128.63 128.13 129.13 -4.8175 0 0 0 0.23508 1 25685 25685 7.9102 3.1541 1 53193 2261 35311 35332 52057 52057 -0.0754679753374603 VYDKELWL 8 Unmodified _VYDKELWL_ 0 0 0 REV__ENST00000434435.1_2_2:217277633-217279408:+|nuORF REV__ENST00000434435.1_2_2:217277633-217279408:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2708740234375 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 90.827 1 86.967 86.467 87.467 -3.8595 0 0 0 0.23664 1 17773 17773 3.2813 0 1 + 53194 21651 35312 35333 52058 52058 0.024552247287601858 VYFENSYSNPY 11 Unmodified _VYFENSYSNPY_ 0 0 0 MTA3|p.S18Y|1|0.48|ENSG00000057935|chr2:42570461-42570461|C/A|missense_variant MTA3|p.S18Y|1|0.48|ENSG00000057935|chr2:42570461-42570461|C/A|missense_variant MTA3|p.S18Y|1|0.48|ENSG00000057935|chr2:42570461-42570461|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 461.5366516113281 3 461.534825 1381.58265 NaN NaN NaN NaN NaN NaN NaN 154.21 1 148.99 148.49 149.49 -5.2209 0 0 0 0.23698 1 29895 29895 2.6312 0.72486 1 53195 12165 35313 35334 52059 52059 -0.09288122152611322 VYFPACVY 8 Unmodified _VYFPACVY_ 0 0 0 REV__SLC7A9|p.N203Tfs*61|1|0.2|ENSG00000021488|chr19:32862214-32862214|T/-|frameshift_variant REV__SLC7A9|p.N203Tfs*61|1|0.2|ENSG00000021488|chr19:32862214-32862214|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2445983886719 2 481.228039 960.441526 0.078757 3.79E-05 -1.1652 -0.00056074 -1.0865 -0.00052284 481.2274816303168 64.1 0.98004 61.103 60.455 61.435 -2.9975 46 27 2 0 0 0 0.72231 1 12291 12291 11.114 0 1 2120000 + 53196 13983 35314 35335 52060 52060 -0.040277472689467686 VYFQLCDTY 9 Unmodified _VYFQLCDTY_ 0 0 0 REV__ENST00000481205.5_1_14:60072082-60072247:-|nuORF REV__ENST00000481205.5_1_14:60072082-60072247:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3116455078125 2 576.257525 1150.5005 0.085473 4.9255E-05 -4.4005 -0.0025358 -4.315 -0.0024866 576.2557264180167 58.152 0.51648 54.947 54.612 55.128 -3.2052 21 14 2 0 0 0 0.48644 1 10851 10851 20.454 1.0917 1 1158400 + 53197 16554 35315 35336 52061 52061 -0.06873315765255938 VYFRQGVTP 9 Unmodified _VYFRQGVTP_ 0 0 0 nc|ENSG00000205356|Q7Z6L1-3|TECPR1;TECPR1|p.I932Sfs*105|1|0.13|ENSG00000205356|chr7:98223125-98223125|G/-|frameshift_variant;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.28564453125 2 533.787641 1065.56073 0.28468 0.00015196 -0.74068 -0.00039536 -0.456 -0.00024341 533.7861055312288 136.38 0.35121 131.55 131.41 131.77 -4.8307 13 9 2 0 0 0 0.74858 1 26291 26291 22.736 3.4793 1 1095100 53198 7643 35316 35337 52062 52062 0.03057162680147485 VYFVQKNSP 9 Unmodified _VYFVQKNSP_ 0 0 0 SEC14L1|p.L86P|1|0.11|ENSG00000129657|chr17:77191224-77191224|T/C|missense_variant SEC14L1|p.L86P|1|0.11|ENSG00000129657|chr17:77191224-77191224|T/C|missense_variant SEC14L1|p.L86P|1|0.11|ENSG00000129657|chr17:77191224-77191224|T/C|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2678833007812 2 541.287474 1080.5604 0.40432 0.00021885 -0.35218 -0.00019063 0.052143 2.8224E-05 541.7890069281915 109.33 0.65909 109.33 108.95 109.61 0 28 18 2 0 0 0 0.55979 1 21524 21524 15.847 0 1 1425500 53199 25648 35317 35338 52063 52063 0.023337429602861448 VYGEHIFWT 9 Unmodified _VYGEHIFWT_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1;LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3256225585938 2 576.279649 1150.54475 0.3016 0.00017381 3.264 0.001881 3.5656 0.0020548 576.783796866896 154.63 0.10628 154.63 154.58 154.68 0 4 2 2 0 0 0 0.60489 1 30986 30986 2.4985 0.59211 1 2094800 53200 3265 35318 35339 52064 52064 -0.024505435567562017 VYGKASAG 8 Unmodified _VYGKASAG_ 0 0 0 tr|U7T6F8|U7T6F8_FUSNURepressorLexAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00219PE=4SV=1 tr|U7T6F8|U7T6F8_FUSNURepressorLexAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00219PE=4SV=1 tr|U7T6F8|U7T6F8_FUSNURepressorLexAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00219PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 377.1824035644531 2 376.700503 751.386454 0.10851 4.0877E-05 -0.18588 -7.0021E-05 -0.077367 -2.9144E-05 376.70041205679206 43.83 1.2041 43.83 43.329 44.533 0 106 34 5 0 0 0 0.89147 1 8345 8345 0.25148 0.18749 1 116000000 53201 26495 35319 35340 52065 52065 0.0008158225480201509 VYIKSIQQS 9 Unmodified _VYIKSIQQS_ 0 0 0 REV__ENST00000514672.1_1_5:81605958-81614116:+|nuORF REV__ENST00000514672.1_1_5:81605958-81614116:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27880859375 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 141.67 1 141.67 141.17 142.17 0 0 0 0 0.22962 1 28236 28236 14.838 0.93222 1 + 53202 22578 35320 35341 52066 52066 0.05690012131753974 VYINYLFY 8 Unmodified _VYINYLFY_ 0 0 0 ENSG00000268089|ENST00000598523|GABRQ ENSG00000268089|ENST00000598523|GABRQ ENSG00000268089|ENST00000598523|GABRQ MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.775390625 2 547.781493 1093.54843 NaN NaN NaN NaN NaN NaN NaN 133.9 1 129.09 128.59 129.59 -4.8175 0 0 0 0.21486 1 25775 25775 9.3474 0 1 53203 7993 35321 35342 52067 52067 0.005401262170835253 VYIRNEYWLWK 11 Unmodified _VYIRNEYWLWK_ 0 0 0 REV__ENSG00000189362|ENST00000409150|NEMP2 REV__ENSG00000189362|ENST00000409150|NEMP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4085083007812 2 785.414269 1568.81398 NaN NaN NaN NaN NaN NaN NaN 101.74 1 97.558 97.058 98.058 -4.1861 0 0 0 0.2367 1 19991 19991 2.9952 1.6657 1 + 53204 19206 35322 35343 52068 52068 0.05232970339716303 VYKWLMRR 8 Unmodified _VYKWLMRR_ 0 0 0 REV__ENST00000495184.5_1_9:312077-317121:+|nuORF REV__ENST00000495184.5_1_9:312077-317121:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3305053710938 2 576.328953 1150.64335 NaN NaN NaN NaN NaN NaN NaN 27.037 1 25.255 24.755 25.755 -1.7821 0 0 0 0.2396 1 4793 4793 0.0082765 0.004896 1 + 53205 22375 35323 35344 52069 52069 0.07405781207285145 VYKYLKFHRFY 11 Unmodified _VYKYLKFHRFY_ 0 0 0 REV__ENSG00000196118|ENST00000543610|CFAP119 REV__ENSG00000196118|ENST00000543610|CFAP119 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2815551757812 3 521.953878 1562.8398 0.42606 0.00022238 0.41956 0.00021899 0.84562 0.00044138 521.9529938628585 73.776 0.13774 70.182 70.083 70.221 -3.594 5 3 2 0 0 0 0.82662 1 13986 13986 0.094841 0 1 844540 + 53206 19218 35324 35345 52070 52070 0.08089864582007067 VYKYLKFHRFY 11 Unmodified _VYKYLKFHRFY_ 0 0 0 REV__ENSG00000196118|ENST00000543610|CFAP119 REV__ENSG00000196118|ENST00000543610|CFAP119 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2617797851562 3 521.953878 1562.8398 0.42606 0.00022238 0.41956 0.00021899 0.84562 0.00044138 521.9529938628585 73.776 0.13774 70.182 70.083 70.221 -3.594 5 3 2 0 0 0 0.89134 1 14000 14000 0.026206 0 1 844540 + 53207 19218 35324 35345 52071 52071 0.08089864582007067 VYLCRGAC 8 Unmodified _VYLCRGAC_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|194|1|anti-sense L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|194|1|anti-sense L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|194|1|anti-sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 885.4151000976562 1 884.411705 883.404429 1.0737 0.00094958 -1.181 -0.0010445 -0.1073 -9.4897E-05 884.4107145211267 28.296 0.41209 26.339 26.124 26.536 -1.9561 14 11 2 0 0 0 8448 1 5052 5052 0.12286 0 1 819990 53208 12045 35325 35346 52072 52072 -0.04193742086351904 VYLMKDKEV 9 Unmodified _VYLMKDKEV_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.212646484375 3 375.538854 1123.59473 -0.13411 -5.0363E-05 1.2787 0.00048022 1.1446 0.00042985 375.5387906373035 108.84 0.66391 104.39 104.01 104.68 -4.4518 41 18 4 0 0 0 0.27705 1 20910 20910 0.40827 0 1 1852300 53209 6557 35326 35347 52073 52073 0.03787823056859452 VYLSYVLHGMK 11 Unmodified _VYLSYVLHGMK_ 0 0 0 ENST00000298281.8_1_11:82872486-82874784:+|nuORF ENST00000298281.8_1_11:82872486-82874784:+|nuORF ENST00000298281.8_1_11:82872486-82874784:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.91204833984375 3 437.237286 1308.69003 -0.71242 -0.00031149 -0.13279 -5.8062E-05 -0.84521 -0.00036956 437.23723307496414 13.744 0.17041 12.571 12.485 12.656 -1.173 9 4 3 0 0 0 0.66234 1 1801 1801 0 0 1 552050 53210 8525 35327 35348 52074 52074 0.04803176247878582 VYLYLLILI 9 Unmodified _VYLYLLILI_ 0 0 0 sp|P09716|US17_HCMVAUncharacterizedproteinHVLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US17PE=3SV=1;sp|F5H9N9|US17_HCMVMProteinUS17OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US17PE=4SV=1 sp|P09716|US17_HCMVAUncharacterizedproteinHVLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US17PE=3SV=1 sp|P09716|US17_HCMVAUncharacterizedproteinHVLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US17PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 374.91375732421875 3 374.910616 1121.71002 NaN NaN NaN NaN NaN NaN NaN 10.369 1 9.4649 8.9649 9.9649 -0.90401 0 0 0 0.23508 1 1291 1291 0 0 1 53211 25715 35328 35349 52075 52075 0.15403295250212068 VYMKPIQCL 9 Unmodified _VYMKPIQCL_ 0 0 0 REV__ENST00000343813.9_1_1:6283540-6283621:-|nuORF REV__ENST00000343813.9_1_1:6283540-6283621:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7757568359375 2 547.790481 1093.56641 NaN NaN NaN NaN NaN NaN NaN 171.46 1 166.54 166.04 167.04 -4.9149 0 0 0 0.23508 1 33958 33958 8.5933 2.3875 1 + 53212 20737 35329 35350 52076 52076 0.023368018759356346 VYNRSDLYG 9 Unmodified _VYNRSDLYG_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7816162109375 2 543.764363 1085.51417 -0.032898 -1.7889E-05 0.061339 3.3354E-05 0.028441 1.5465E-05 543.7644245765092 79.261 0.58963 75.456 75.163 75.753 -3.8048 40 16 4 0 0 0 0.5059 1 15033 15033 19.257 0 1 7324200 53213 4201 35330 35351 52077 52077 -0.025163219418118388 VYNRSDLYG 9 Unmodified _VYNRSDLYG_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7893676757812 2 543.764363 1085.51417 0.028066 1.5261E-05 0.15386 8.3661E-05 0.18192 9.8923E-05 543.7643969671366 79.093 0.59731 75.417 75.129 75.727 -3.676 47 16 4 0 0 0 0.5059 2 15079 15079;15095 19.257 3.0821 1 7163600 53214 4201 35330 35351 52078;52079 52078 -0.025163219418118388 VYPIRLVKVN 10 Unmodified _VYPIRLVKVN_ 0 0 0 ENST00000594962.5_1_19:17608063-17615347:+|nuORF;nc|ENSG00000130304|Q6PCB7-2|SLC27A1;ENSG00000130304|ENST00000252595|SLC27A1 ENST00000594962.5_1_19:17608063-17615347:+|nuORF ENST00000594962.5_1_19:17608063-17615347:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 401.35406494140625 3 400.920286 1199.73903 NaN NaN NaN NaN NaN NaN NaN 10.551 1 9.4578 8.9578 9.9578 -1.0936 0 0 0 2.8426 1 1207 1207 0 0 1 53215 3598 35331 35352 52080 52080 0.1471483259915658 VYQEWLEK 8 Unmodified _VYQEWLEK_ 0 0 0 MAP9|p.D594Rfs*2|1|0.11|ENSG00000164114|chr4:155352637-155352638|-/T|frameshift_variant;ENSG00000164114|ENST00000311277|MAP9;MAP9|p.K567Rfs*13|5|0.22|ENSG00000164114|chr4:155352717-155352717|T/-|frameshift_variant MAP9|p.D594Rfs*2|1|0.11|ENSG00000164114|chr4:155352637-155352638|-/T|frameshift_variant MAP9|p.D594Rfs*2|1|0.11|ENSG00000164114|chr4:155352637-155352638|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7703247070312 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 144.97 1 144.97 144.47 145.47 0 0 0 0 0.21486 1 28971 28971 11.64 2.2929 1 53216 5510 35332 35353 52081 52081 0.0013803672338781325 VYQKDIDKLRR 11 Unmodified _VYQKDIDKLRR_ 0 0 0 REV__nc|ENSG00000284874|Q99719-2|SEPTIN5 REV__nc|ENSG00000284874|Q99719-2|SEPTIN5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7279357910156 3 478.612292 1432.81505 0.12211 5.8446E-05 -3.2104 -0.0015365 -3.0883 -0.0014781 478.6115124118184 149.46 0.10698 144.26 144.18 144.29 -5.1994 4 2 2 0 0 0 0.88733 1 28939 28939 1.4551 1.4492 1 910230 + 53217 24318 35333 35354 52082 52082 0.11595184708630768 VYQPFKKLE 9 Unmodified _VYQPFKKLE_ 0 0 0 REV__ENSG00000203797|ENST00000368924|DDO REV__ENSG00000203797|ENST00000368924|DDO MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.315673828125 2 576.326599 1150.63865 0.30329 0.00017479 -3.8443 -0.0022155 -3.541 -0.0020408 576.8251403462958 159.15 0.10316 159.15 159.06 159.16 0 4 2 2 0 0 0 0.5059 1 31939 31939 19.257 2.1441 1 1321200 + 53218 19500 35334 35355 52083 52083 0.06935175545504535 VYQPFKKLE 9 Unmodified _VYQPFKKLE_ 0 0 0 REV__ENSG00000203797|ENST00000368924|DDO REV__ENSG00000203797|ENST00000368924|DDO MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 576.326599 1150.63865 0.30329 0.00017479 -3.8443 -0.0022155 -3.541 -0.0020408 576.8251403462958 159.15 0.10316 159.15 159.06 159.16 0 0 0 NaN 19.257 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1321200 + 53219 19500 35334 35355 0.06935175545504535 VYRLGGTDTI 10 Unmodified _VYRLGGTDTI_ 0 0 0 ENST00000553854.1_1_14:82128143-82128728:+|nuORF ENST00000553854.1_1_14:82128143-82128728:+|nuORF ENST00000553854.1_1_14:82128143-82128728:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7753295898438 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 119.39 1 114.75 114.25 115.25 -4.645 0 0 0 2.8426 1 22913 22913 3.8763 0 1 53220 11208 35335 35356 52084 52084 0.03372824126381602 VYRPRRHRLWM 11 Unmodified _VYRPRRHRLWM_ 0 0 0 REV__ENST00000502346.1_1_5:82360835-82373254:-|nuORF REV__ENST00000502346.1_1_5:82360835-82373254:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3915405273438 2 785.438421 1568.86229 NaN NaN NaN NaN NaN NaN NaN 125.73 1 121.08 120.58 121.58 -4.6495 0 0 0 0.22632 1 24192 24192 0.094841 0 1 + 53221 22435 35336 35357 52085 52085 0.10061185498648229 VYRRRALR 8 Unmodified _VYRRRALR_ 0 0 0 ENST00000560298.1_1_15:57024990-57025158:-|nuORF ENST00000560298.1_1_15:57024990-57025158:-|nuORF ENST00000560298.1_1_15:57024990-57025158:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.88653564453125 3 363.896586 1088.66793 NaN NaN NaN NaN NaN NaN NaN 10.088 1 10.088 9.5876 10.588 0 0 0 0 0.21486 1 1235 1235 0 0 1 53222 11287 35337 35358 52086 52086 0.12714177405018745 VYRSVRTY 8 Unmodified _VYRSVRTY_ 0 0 0 REV__nc|ENSG00000167759|Q9UKR3-2|KLK13 REV__nc|ENSG00000167759|Q9UKR3-2|KLK13 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2713012695312 2 522.285266 1042.55598 -0.29787 -0.00015557 -0.64272 -0.00033568 -0.94059 -0.00049126 522.7880173952198 89.387 0.28853 85.528 85.439 85.727 -3.8595 9 7 2 0 0 0 0.88497 1 17521 17521 10.074 0 1 1315700 + 53223 17967 35338 35359 52087 52087 0.03640278537386621 VYSARGDYI 9 Unmodified _VYSARGDYI_ 0 0 0 ENST00000461176.1_1_7:100224226-100225153:-|nuORF;ENST00000465294.5_1_7:100218482-100225153:-|nuORF;nc|ENSG00000106327|Q9UP52-2|TFR2;ENST00000476304.5_1_7:100218482-100231271:-|nuORF;nc|ENSG00000106327|Q9UP52-3|TFR2;TFR2|p.R704Tfs*88|1|0.29|ENSG00000106327|chr7:100626789-100626790|-/T|frameshift_variant;ENSG00000106327|ENST00000223051|TFR2 ENST00000461176.1_1_7:100224226-100225153:-|nuORF ENST00000461176.1_1_7:100224226-100225153:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2614135742188 2 522.261456 1042.50836 -0.2302 -0.00012022 0.054035 2.822E-05 -0.17616 -9.2002E-05 522.2615124794752 83.045 0.80602 79.438 79.027 79.833 -3.6079 43 22 2 0 0 0 0.38188 1 16239 16239 26.884 3.7352 1 3433700 53224 2376 35339 35360 52088 52088 -0.011194204534831442 VYSRRWRQWRK 11 Unmodified _VYSRRWRQWRK_ 0 0 0 REV__ENST00000216456.6_1_14:68126581-68129225:-|nuORF REV__ENST00000216456.6_1_14:68126581-68129225:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.27490234375 3 540.970925 1619.89095 0.24247 0.00013117 -0.52756 -0.00028539 -0.28509 -0.00015423 540.9710376294626 128.13 0.17606 123.31 123.23 123.41 -4.817 5 4 2 0 0 0 0.89122 1 24586 24586 0.172 0.077159 1 921380 + 53225 20015 35340 35361 52089 52089 0.10579626399430708 VYSRWRKFFDL 11 Unmodified _VYSRWRKFFDL_ 0 0 0 REV__ENSG00000120332|ENST00000239462|TNN REV__ENSG00000120332|ENST00000239462|TNN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 506.2224426269531 3 506.273499 1515.79867 NaN NaN NaN NaN NaN NaN NaN 138.52 1 133.57 133.07 134.07 -4.952 0 0 0 0.22632 1 26637 26637 0.026206 0 1 + 53226 15619 35341 35362 52090 52090 0.06140103542543329 VYTEVANQR 9 Unmodified _VYTEVANQR_ 0 0 0 REV__ENST00000467604.5_1_3:118931398-118931611:-|nuORF REV__ENST00000467604.5_1_3:118931398-118931611:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2001037597656 3 360.520851 1078.54072 -0.068591 -2.4728E-05 0.66852 0.00024101 0.59993 0.00021629 360.5211324774332 32.194 0.46426 29.964 29.76 30.224 -2.2305 21 12 2 0 0 0 0.87497 1 5914 5914 8.1555 0 1 395770 + 53227 21982 35342 35363 52091 52091 0.004593669495079666 VYTEWDLRID 10 Unmodified _VYTEWDLRID_ 0 0 0 REV__DLEC1|p.Y1310Mfs*121|1|0.59|ENSG00000008226|chr3:38116521-38116521|T/-|frameshift_variant REV__DLEC1|p.Y1310Mfs*121|1|0.59|ENSG00000008226|chr3:38116521-38116521|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2181701660156 3 437.218949 1308.63502 NaN NaN NaN NaN NaN NaN NaN 74.881 1 74.881 74.381 75.381 0 0 0 0 0.22442 1 14541 14541 23.801 8.0624 1 + 53228 13689 35343 35364 52092 52092 -0.0069553901901144854 VYVQVTRD 8 Unmodified _VYVQVTRD_ 0 0 0 LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|20|1|anti-sense LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|20|1|anti-sense LTR7B_dup599|chr13:43059672-43060100:-|1.016192942152016|0.1328468061351861|2.94|472.0|20|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2637634277344 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 98.821 1 98.821 98.321 99.321 0 0 0 0 0.22847 1 19373 19373 10.074 6.4869 1 53229 12097 35344 35365 52093 52093 0.02332883409144415 VYVVGVTIL 9 Unmodified _VYVVGVTIL_ 0 0 0 REV__ENST00000569950.1_1_16:46710493-46715410:-|nuORF REV__ENST00000569950.1_1_16:46710493-46715410:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2431335449219 2 481.799686 961.584819 -0.29907 -0.00014409 0.69234 0.00033357 0.39327 0.00018948 481.7999205351669 60.893 0.45569 60.893 60.662 61.118 0 22 12 2 0 0 0 0.60888 1 11663 11663 0.029283 0 1 1301200 + 53230 14240 35345 35366 52094 52094 0.10249003113824529 VYYTVFSY 8 Unmodified _VYYTVFSY_ 0 0 0 REV__ENSG00000101605|ENST00000356443|MYOM1 REV__ENSG00000101605|ENST00000356443|MYOM1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2628784179688 2 521.250026 1040.4855 -0.35452 -0.00018479 -0.50585 -0.00026368 -0.86038 -0.00044847 521.2497366661088 42.824 0.95779 40.105 39.45 40.408 -2.7191 57 26 3 0 0 0 0.72861 1 7969 7969 10.183 0 1 7873500 + 53231 14795 35346 35367 52095 52095 -0.033124395709592136 VYYWQRLREKE 11 Unmodified _VYYWQRLREKE_ 0 0 0 CLMP|p.I169L|1|0.17|ENSG00000166250|chr11:123083731-123083731|T/G|missense_variant CLMP|p.I169L|1|0.17|ENSG00000166250|chr11:123083731-123083731|T/G|missense_variant CLMP|p.I169L|1|0.17|ENSG00000166250|chr11:123083731-123083731|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3934326171875 2 785.412257 1568.80996 NaN NaN NaN NaN NaN NaN NaN 114.21 1 109.74 109.24 110.24 -4.4726 0 0 0 0.22632 1 22507 22507 0.094841 0 1 53232 581 35347 35368 52096 52096 0.048308808459978536 WAEPVADK 8 Unmodified _WAEPVADK_ 0 0 0 REV__ENST00000412159.1_1_X:65719062-65719263:+|nuORF REV__ENST00000412159.1_1_X:65719062-65719263:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23114013671875 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 33.519 1 31.303 30.803 31.803 -2.2158 0 0 0 0.23584 1 5843 5843 0.68139 0 1 + 53233 21432 35348 35369 52097 52097 -0.01086477027968158 WAESPADAP 9 Unmodified _WAESPADAP_ 0 0 0 REV__SNX29|p.L418Sfs*35|1|0.32|ENSG00000048471|chr16:12069060-12069060|C/-|frameshift_variant REV__SNX29|p.L418Sfs*35|1|0.32|ENSG00000048471|chr16:12069060-12069060|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.15045166015625 3 315.14338 942.408311 NaN NaN NaN NaN NaN NaN NaN 118.06 1 113.65 113.15 114.15 -4.4088 0 0 0 0.23508 1 22720 22720 1.1933 0 1 + 53234 24665 35349 35370 52098 52098 -0.06519657787293909 WAGLHPEGTL 10 Unmodified _WAGLHPEGTL_ 0 0 0 ENST00000376954.5_1_X:47775298-47775454:+|nuORF ENST00000376954.5_1_X:47775298-47775454:+|nuORF ENST00000376954.5_1_X:47775298-47775454:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2750854492188 2 540.777274 1079.53999 0.58513 0.00031643 -3.0462 -0.0016473 -2.461 -0.0013309 541.2778668129026 104.97 0.58701 104.97 104.59 105.17 0 26 16 2 0 0 0 0.28382 1 20614 20614 8.7518 2.5599 1 1967800 53235 9258 35350 35371 52099 52099 0.003405723004561878 WAGQWNRWKF 10 Unmodified _WAGQWNRWKF_ 0 0 0 ENST00000575695.5_1_16:74706404-74709236:-|nuORF ENST00000575695.5_1_16:74706404-74709236:-|nuORF ENST00000575695.5_1_16:74706404-74709236:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2335205078125 3 460.231634 1377.67307 NaN NaN NaN NaN NaN NaN NaN 142.01 1 142.01 141.51 142.51 0 0 0 0 2.8426 1 28310 28310 1.9064 0.45126 1 53236 11457 35351 35372 52100 52100 -0.0006556352304869506 WAGSEVRRS 9 Unmodified _WAGSEVRRS_ 0 0 0 REV__ENST00000492898.1_1_1:153903201-153905153:-|nuORF REV__ENST00000492898.1_1_1:153903201-153905153:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6791381835938 2 524.270147 1046.52574 -0.81714 -0.0004284 -0.62796 -0.00032922 -1.4451 -0.00075762 524.2697490231066 14.349 0.17404 13.235 13.123 13.297 -1.1142 8 4 3 0 0 0 0.88312 1 2128 2128 1.8442 1.4435 1 295310 + 53237 19459 35352 35373 52101 52101 0.004339198721709181 WAGSEVRRS 9 Unmodified _WAGSEVRRS_ 0 0 0 REV__ENST00000492898.1_1_1:153903201-153905153:-|nuORF REV__ENST00000492898.1_1_1:153903201-153905153:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.270147 1046.52574 -1.5569 -0.00081626 -0.26358 -0.00013819 -1.8205 -0.00095445 524.2697899064271 14.383 0.14296 13.173 13.066 13.209 -1.2106 -0.031253 0.00030829 NaN 1.8442 7 3 3 NaN NaN NaN NaN 0 NaN NaN 0 132810 + 53238 19459 35352 35373 0.004339198721709181 WAGYFLPC 8 Unmodified _WAGYFLPC_ 0 0 0 REV__ENST00000310546.2_1_3:140770656-140784819:+|nuORF REV__ENST00000310546.2_1_3:140770656-140784819:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7207946777344 2 478.720381 955.42621 NaN NaN NaN NaN NaN NaN NaN 14.09 1 12.88 12.38 13.38 -1.2106 0 0 0 0.21486 1 1839 1839 2.8892 0.58649 1 + 53239 20480 35353 35374 52102 52102 -0.05328614066138471 WAKFNWVD 8 Unmodified _WAKFNWVD_ 0 0 0 REV__CCR7|p.R54W|1|0.35|ENSG00000126353|chr17:40555719-40555719|G/A|missense_variant REV__CCR7|p.R54W|1|0.35|ENSG00000126353|chr17:40555719-40555719|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.280029296875 2 533.261259 1064.50797 NaN NaN NaN NaN NaN NaN NaN 140.51 1 135.64 135.14 136.14 -4.8678 0 0 0 0.23584 1 27092 27092 0.68139 0 1 + 53240 13316 35354 35375 52103 52103 -0.021707953826762605 WAKLCATLG 9 Unmodified _WAKLCATLG_ 0 0 0 REV__DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant REV__DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.78411865234375 2 481.760038 961.505523 1.2233 0.00058936 0.7146 0.00034427 1.9379 0.00093363 481.7603621766377 25.839 0.44726 24.191 24 24.447 -1.6482 35 12 4 0 0 0 0.57447 1 4511 4511 14.838 1.3304 1 6652400 + 53241 13658 35355 35376 52104 52104 0.02323032888000398 WALAWFFV 8 Unmodified _WALAWFFV_ 0 0 0 REV__nc|ENSG00000140798|Q96J65-4|ABCC12 REV__nc|ENSG00000140798|Q96J65-4|ABCC12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.185302734375 3 347.184851 1038.53272 NaN NaN NaN NaN NaN NaN NaN 133.12 1 128.48 127.98 128.98 -4.6399 0 0 0 0.21486 1 26245 26245 0.45834 0 1 + 53242 12900 35356 35377 52105 52105 0.01499884490704062 WALFRKIV 8 Unmodified _WALFRKIV_ 0 0 0 REV__ENSG00000260097|ENST00000563237|SPDYE6;REV__nc|ENSG00000205482|P0DV79|SPDYE18 REV__nc|ENSG00000205482|P0DV79|SPDYE18 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.83740234375 3 344.883284 1031.62802 NaN NaN NaN NaN NaN NaN NaN 26.675 1 26.675 26.175 27.175 0 0 0 0 0.23538 1 4679 4679 0.0082765 0 1 + 53243 18934;18141 35357 35378 52106 52106 0.11347237681729894 WALFSRRLR 9 Unmodified _WALFSRRLR_ 0 0 0 REV__nc|ENSG00000161091|Q6NUT3-3|MFSD12 REV__nc|ENSG00000161091|Q6NUT3-3|MFSD12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2941284179688 2 602.856724 1203.69889 0.38753 0.00023362 2.8714 0.001731 3.2589 0.0019647 602.8579672642514 125.48 0.20898 125.48 125.36 125.57 0 8 5 2 0 0 0 0.65257 1 24750 24750 0.0033805 0 1 1532400 + 53244 24122 35358 35379 52107 52107 0.10519330719262143 WALRVTPG 8 Unmodified _WALRVTPG_ 0 0 0 ENST00000569969.5_2_16:28986191-28992937:+|nuORF;nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1 ENST00000569969.5_2_16:28986191-28992937:+|nuORF ENST00000569969.5_2_16:28986191-28992937:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 450.2430725097656 2 450.25852 898.502486 NaN NaN NaN NaN NaN NaN NaN 24.482 1 22.834 22.334 23.334 -1.6482 0 0 0 0.21486 1 4265 4265 2.8892 0 1 53245 5998 35359 35380 52108 52108 0.04917525825510438 WAQGCGDC 8 Unmodified _WAQGCGDC_ 0 0 0 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4854125976562 1 839.281085 838.273808 0.62272 0.00052264 -3.3836 -0.0028398 -2.7609 -0.0023172 839.2785506266706 167.97 0.55127 163.18 163.11 163.66 -4.7898 16 15 2 0 0 0 8448 1 34020 34020 0 0 1 113810000 53246 5823 35360 35381 52109 52109 -0.15179757805196914 WASCEDDDE 9 Unmodified _WASCEDDDE_ 0 0 0 REV__nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 REV__nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 357.1038513183594 3 357.118683 1068.33422 NaN NaN NaN NaN NaN NaN NaN 4.066 1 3.0571 2.5571 3.5571 -1.0089 0 0 0 0.23508 1 11 11 0 0 1 + 53247 12983 35361 35382 52110 52110 -0.19721413731804205 WASFLRLAIPS 11 Unmodified _WASFLRLAIPS_ 0 0 0 ENST00000495425.6_1_17:19458825-19480863:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1;nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF ENST00000495425.6_1_17:19458825-19480863:+|nuORF ENST00000495425.6_1_17:19458825-19480863:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7576904296875 2 630.858598 1259.70264 NaN NaN NaN NaN NaN NaN NaN 146.43 1 146.43 145.93 146.93 0 0 0 0 0.22632 1 29279 29279 0.172 0.14059 1 53248 4419 35362 35383 52111 52111 0.083179557024323 WAVLDPSQK 9 Unmodified _WAVLDPSQK_ 0 0 0 ZNF20|p.L23V|1|0.21|ENSG00000132010|chr19:12135841-12135841|A/C|missense_variant ZNF20|p.L23V|1|0.21|ENSG00000132010|chr19:12135841-12135841|A/C|missense_variant ZNF20|p.L23V|1|0.21|ENSG00000132010|chr19:12135841-12135841|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2781982421875 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 47.396 1 44.446 43.946 44.946 -2.9499 0 0 0 0.23508 1 8652 8652 7.9102 1.187 1 53249 26605 35363 35384 52112 52112 0.025174564432290936 WAWEKVKFYI 10 Unmodified _WAWEKVKFYI_ 0 0 0 SLC32A1|p.D302N|1|0.33|ENSG00000101438|chr20:38727965-38727965|G/A|missense_variant;ENSG00000101438|ENST00000217420|SLC32A1 SLC32A1|p.D302N|1|0.33|ENSG00000101438|chr20:38727965-38727965|G/A|missense_variant SLC32A1|p.D302N|1|0.33|ENSG00000101438|chr20:38727965-38727965|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2375183105469 3 457.248291 1368.72304 0.032314 1.4776E-05 -4.3376 -0.0019833 -4.3052 -0.0019686 457.58206050917215 105.56 0.91578 101.18 100.63 101.54 -4.3764 54 25 4 0 0 0 0.49302 1 20231 20231 0.063865 0 1 1671800 53250 2068 35364 35385 52113 52113 0.053431263622996994 WAWQDNKF 8 Unmodified _WAWQDNKF_ 0 0 0 REV__ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant REV__ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7859497070312 2 547.756341 1093.49813 0.32763 0.00017946 -1.1744 -0.00064328 -0.84675 -0.00046381 547.7556678887421 130.73 0.81816 130.73 130.3 131.12 0 57 22 3 0 0 0 0.72861 1 25760 25760 10.183 0.10947 1 19606000 + 53251 14218 35365 35386 52114 52114 -0.044879833880713704 WAYGSLKIR 9 Unmodified _WAYGSLKIR_ 0 0 0 REV__ENSG00000100814|ENST00000358932|CCNB1IP1 REV__ENSG00000100814|ENST00000358932|CCNB1IP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7858276367188 2 547.311284 1092.60801 0.26463 0.00014483 -1.0429 -0.00057079 -0.77827 -0.00042596 547.3093614484953 61.462 0.10316 58.222 58.137 58.24 -3.2395 4 2 2 0 0 0 0.65439 1 11487 11487 9.3474 2.0582 1 397760 + 53252 14742 35366 35387 52115 52115 0.06541441951117122 WAYTGDEPR 9 Unmodified _WAYTGDEPR_ 0 0 0 REV__nc|ENSG00000170959|M0R2J8|DCDC1 REV__nc|ENSG00000170959|M0R2J8|DCDC1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7777709960938 2 547.748713 1093.48287 0.21579 0.0001182 -0.51712 -0.00028325 -0.30134 -0.00016506 547.7487444369691 61.337 0.7878 58.375 57.863 58.651 -2.9614 37 22 2 0 0 0 0.52414 1 11771 11771 18.135 3.2967 1 1866700 + 53253 18192 35367 35388 52116 52116 -0.0601289497592461 WAYTGDEPR 9 Unmodified _WAYTGDEPR_ 0 0 0 REV__nc|ENSG00000170959|M0R2J8|DCDC1 REV__nc|ENSG00000170959|M0R2J8|DCDC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7708740234375 2 547.748713 1093.48287 0.21579 0.0001182 -0.51712 -0.00028325 -0.30134 -0.00016506 547.7487444369691 61.337 0.7878 58.375 57.863 58.651 -2.9614 37 22 2 0 0 0 0.8204 1 11754 11754 13.508 13.508 1 1866700 + 53254 18192 35367 35388 52117 52117 -0.0601289497592461 WAYTGDEPR 9 Unmodified _WAYTGDEPR_ 0 0 0 REV__nc|ENSG00000170959|M0R2J8|DCDC1 REV__nc|ENSG00000170959|M0R2J8|DCDC1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 547.748713 1093.48287 0.2651 0.00014521 -0.6344 -0.00034749 -0.3693 -0.00020228 548.2495692607332 61.476 0.83147 58.236 57.858 58.69 -3.2395 -0.069724 -5.6629E-05 NaN 18.135 40 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1905100 + 53255 18192 35367 35388 -0.0601289497592461 WAYVQRYRYF 10 Unmodified _WAYVQRYRYF_ 0 0 0 SCAF1|p.R1268W|1|0.25|ENSG00000126461|chr19:49658262-49658262|C/T|missense_variant SCAF1|p.R1268W|1|0.25|ENSG00000126461|chr19:49658262-49658262|C/T|missense_variant SCAF1|p.R1268W|1|0.25|ENSG00000126461|chr19:49658262-49658262|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 484.58953857421875 3 484.578811 1450.7146 NaN NaN NaN NaN NaN NaN NaN 12.787 1 11.657 11.157 12.157 -1.1293 0 0 0 2.8426 1 1601 1601 0 0 1 53256 25636 35368 35389 52118 52118 0.007275724456576427 WCFWEDYRHNW 11 Unmodified _WCFWEDYRHNW_ 0 0 0 REV__PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant REV__PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.781005859375 3 547.894582 1640.66192 0.33584 0.000184 3.266 0.0017894 3.6018 0.0019734 547.8971897707858 156.74 0.20726 156.74 156.62 156.83 0 6 5 2 0 0 0 0.89134 1 31466 31466 0.094841 0 1 1968400 + 53257 14000 35369 35390 52119 52119 -0.13278753679469446 WCFWEDYRHNW 11 Unmodified _WCFWEDYRHNW_ 0 0 0 REV__PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant REV__PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7930908203125 3 547.894582 1640.66192 0.33233 0.00018208 1.0091 0.00055287 1.3414 0.00073496 547.8946316641932 145.66 0.10414 145.66 145.58 145.69 0 4 2 2 0 0 0 0.96227 1 29105 29105 0 0 1 1285100 + 53258 14000 35369 35390 52120 52120 -0.13278753679469446 WCGGLIPK 8 Unmodified _WCGGLIPK_ 0 0 0 REV__ENST00000354249.8_2_16:2030177-2031410:-|nuORF REV__ENST00000354249.8_2_16:2030177-2031410:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2265319824219 2 437.236199 872.457844 0.16659 7.2838E-05 2.2395 0.00097919 2.4061 0.001052 437.2372300912278 22.025 0.41928 22.025 21.77 22.189 0 14 11 2 0 0 0 8448 1 3669 3669 1.7423 0.52744 1 451390 + 53259 20775 35370 35391 52121 52121 0.01651378687813576 WCGGSSSC 8 Unmodified _WCGGSSSC_ 0 0 0 REV__ENST00000566258.1_1_15:34867053-34875822:-|nuORF REV__ENST00000566258.1_1_15:34867053-34875822:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 788.2503051757812 1 786.254536 785.247259 -1.4225 -0.0011184 -3.0361 -0.0023871 -4.4586 -0.0035056 786.2547987948623 6.4786 0.52916 5.4638 5.229 5.7582 -1.0148 30 14 3 0 0 0 0.89856 1 406 406 0 0 1 320280 + 53260 23119 35371 35392 52122 52122 -0.15395446696527415 WCGGSSSC 8 Unmodified _WCGGSSSC_ 0 0 0 REV__ENST00000566258.1_1_15:34867053-34875822:-|nuORF REV__ENST00000566258.1_1_15:34867053-34875822:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 787.253662109375 1 786.254536 785.247259 -1.4216 -0.0011178 -1.1223 -0.00088243 -2.5439 -0.0020002 786.2547185095075 7.2479 1.0127 6.2331 5.6572 6.6699 -1.0148 47 28 2 0 0 0 0.89856 1 465 465 0 0 1 174190 + 53261 23119 35371 35392 52123 52123 -0.15395446696527415 WCGGSSSC 8 Unmodified _WCGGSSSC_ 0 0 0 REV__ENST00000566258.1_1_15:34867053-34875822:-|nuORF REV__ENST00000566258.1_1_15:34867053-34875822:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 786.7433471679688 1 786.254536 785.247259 -1.4224 -0.0011184 -2.8982 -0.0022787 -4.3206 -0.0033971 786.2546272972519 11.282 0.67461 10.216 9.8732 10.548 -1.0664 39 18 3 0 0 0 8448 1 1302 1302 0 0 1 919430 + 53262 23119 35371 35392 52124 52124 -0.15395446696527415 WCGGSSSC 8 Unmodified _WCGGSSSC_ 0 0 0 REV__ENST00000566258.1_1_15:34867053-34875822:-|nuORF REV__ENST00000566258.1_1_15:34867053-34875822:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 786.7465209960938 1 786.254536 785.247259 -1.4223 -0.0011183 -2.3182 -0.0018227 -3.7406 -0.0029411 786.2550362621113 10.237 0.41274 9.1707 9.0451 9.4578 -1.0664 22 11 3 0 0 0 0.90013 1 1094 1094 0.30703 0.30703 1 345510 + 53263 23119 35371 35392 52125 52125 -0.15395446696527415 WCGGSSSC 8 Unmodified _WCGGSSSC_ 0 0 0 REV__ENST00000566258.1_1_15:34867053-34875822:-|nuORF REV__ENST00000566258.1_1_15:34867053-34875822:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 786.7447509765625 1 786.254536 785.247259 -1.4216 -0.0011177 -0.81546 -0.00064116 -2.237 -0.0017589 786.2548731551497 10.837 0.69728 9.7704 9.2891 9.9864 -1.0664 29 19 2 0 0 0 0.9003 1 1159 1159 0 0 1 162800 + 53264 23119 35371 35392 52126 52126 -0.15395446696527415 WCNCNLMY 8 Unmodified _WCNCNLMY_ 0 0 0 REV__nc|ENSG00000167210|Q8IVV2-3|LOXHD1 REV__nc|ENSG00000167210|Q8IVV2-3|LOXHD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6830444335938 2 523.698266 1045.38198 NaN NaN NaN NaN NaN NaN NaN 116.15 1 111.79 111.29 112.29 -4.3585 0 0 0 0.23366 1 22363 22363 3.5871 3.1788 1 + 53265 17911 35372 35393 52127 52127 -0.13889709546265294 WCRRLSSWTRR 11 Unmodified _WCRRLSSWTRR_ 0 0 0 REV__COG2|p.H420R|1|0.22|ENSG00000135775|chr1:230685115-230685115|A/G|missense_variant REV__COG2|p.H420R|1|0.22|ENSG00000135775|chr1:230685115-230685115|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 502.7505187988281 3 502.933483 1505.77862 -0.052975 -2.6643E-05 -1.0172 -0.00051159 -1.0702 -0.00053823 503.26757880570136 93.992 0.9081 93.992 93.649 94.557 0 43 25 3 0 0 0 0.88957 1 18454 18454 3.0723 1.6171 1 3518800 + 53266 13472 35373 35394 52128 52128 0.04596029330923557 WCRRLSSWTRR 11 Unmodified _WCRRLSSWTRR_ 0 0 0 REV__COG2|p.H420R|1|0.22|ENSG00000135775|chr1:230685115-230685115|A/G|missense_variant REV__COG2|p.H420R|1|0.22|ENSG00000135775|chr1:230685115-230685115|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 502.76788330078125 3 502.933483 1505.77862 0.0083484 4.1987E-06 -0.8578 -0.00043142 -0.84945 -0.00042722 503.26753955124536 97.844 0.73217 93.746 93.359 94.091 -4.0978 32 20 2 0 0 0 0.89074 1 19253 19253 1.4551 0 1 3874900 + 53267 13472 35373 35394 52129 52129 0.04596029330923557 WCRRLSSWTRR 11 Unmodified _WCRRLSSWTRR_ 0 0 0 REV__COG2|p.H420R|1|0.22|ENSG00000135775|chr1:230685115-230685115|A/G|missense_variant REV__COG2|p.H420R|1|0.22|ENSG00000135775|chr1:230685115-230685115|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 502.933483 1505.77862 -0.054494 -2.7407E-05 -0.3582 -0.00018015 -0.4127 -0.00020756 503.267857423011 98.171 0.69328 93.902 93.532 94.226 -4.2692 0.035747 0.00047133 NaN 3.0723 32 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3054600 + 53268 13472 35373 35394 0.04596029330923557 WCRRLSSWTRR 11 Unmodified _WCRRLSSWTRR_ 0 0 0 REV__COG2|p.H420R|1|0.22|ENSG00000135775|chr1:230685115-230685115|A/G|missense_variant REV__COG2|p.H420R|1|0.22|ENSG00000135775|chr1:230685115-230685115|A/G|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 502.933483 1505.77862 -0.077034 -3.8743E-05 -0.49578 -0.00024934 -0.57281 -0.00028809 503.2677425819638 97.743 0.8006 93.824 93.503 94.304 -3.9194 -0.041963 0.00026377 NaN 3.0723 36 22 2 NaN NaN NaN NaN 0 NaN NaN 0 3570400 + 53269 13472 35373 35394 0.04596029330923557 WCSHCYCDCC 10 Unmodified _WCSHCYCDCC_ 0 0 0 REV__ENST00000471987.1_1_1:207958419-207959036:+|nuORF REV__ENST00000471987.1_1_1:207958419-207959036:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 611.6639404296875 2 611.665782 1221.31701 NaN NaN NaN NaN NaN NaN NaN 177.29 1 172.5 172 173 -4.7898 0 0 0 2.8426 1 36261 36261 0.13989 0.13989 1 + 53270 20908 35374 35395 52130 52130 -0.2847939540608877 WCTLEPWRWRH 11 Unmodified _WCTLEPWRWRH_ 0 0 0 REV__ENST00000586361.5_1_19:36387800-36388662:-|nuORF REV__ENST00000586361.5_1_19:36387800-36388662:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.38330078125 2 785.380237 1568.74592 NaN NaN NaN NaN NaN NaN NaN 82.475 1 78.867 78.367 79.367 -3.6079 0 0 0 0.22632 1 16120 16120 0.026206 0.025642 1 + 53271 21288 35375 35396 52131 52131 -0.015701777919275628 WCVWTTVSI 9 Unmodified _WCVWTTVSI_ 0 0 0 ENST00000462970.5_1_1:151227250-151234716:+|nuORF ENST00000462970.5_1_1:151227250-151234716:+|nuORF ENST00000462970.5_1_1:151227250-151234716:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7713623046875 2 547.770603 1093.52665 NaN NaN NaN NaN NaN NaN NaN 97.192 1 93.094 92.594 93.594 -4.0978 0 0 0 0.16428 1 19067 19067 28.487 0.85804 1 53272 10095 35376 35397 52132 52132 -0.016370018031238942 WCVWTTVSI 9 Unmodified _WCVWTTVSI_ 0 0 0 ENST00000462970.5_1_1:151227250-151234716:+|nuORF ENST00000462970.5_1_1:151227250-151234716:+|nuORF ENST00000462970.5_1_1:151227250-151234716:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7908325195312 2 547.770603 1093.52665 0.045121 2.4716E-05 1.0244 0.00056112 1.0695 0.00058584 547.7720912640576 97.079 0.34063 93.16 92.887 93.228 -3.9194 12 9 2 0 0 0 0.35443 2 18617 18604;18617 28.487 2.4897 1 876610 53273 10095 35376 35397 52133;52134 52134 -0.016370018031238942 WCVWTTVSI 9 Unmodified _WCVWTTVSI_ 0 0 0 ENST00000462970.5_1_1:151227250-151234716:+|nuORF ENST00000462970.5_1_1:151227250-151234716:+|nuORF ENST00000462970.5_1_1:151227250-151234716:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 547.770603 1093.52665 0.10288 5.6357E-05 0.50935 0.00027901 0.61223 0.00033536 547.7708214393871 93.153 0.5451 93.153 92.714 93.259 0 -0.003278 -0.00025841 NaN 28.487 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1552800 53274 10095 35376 35397 -0.016370018031238942 WCWRLWHWYQR 11 Unmodified _WCWRLWHWYQR_ 0 0 0 REV__ENST00000513055.1_1_5:92921088-92921313:-|nuORF REV__ENST00000513055.1_1_5:92921088-92921313:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 573.941650390625 3 573.941978 1718.8041 NaN NaN NaN NaN NaN NaN NaN 173.35 1 168.47 167.97 168.97 -4.881 0 0 0 0.23698 1 34459 34459 0 0 1 + 53275 22566 35377 35398 52135 52135 -0.02654496146647034 WCWWPPYCPF 10 Unmodified _WCWWPPYCPF_ 0 0 0 REV__ENST00000552329.1_3_12:102111123-102117010:+|nuORF REV__ENST00000552329.1_3_12:102111123-102117010:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 692.78515625 2 692.78573 1383.55691 NaN NaN NaN NaN NaN NaN NaN 7.0749 1 6.0601 5.5601 6.5601 -1.0148 0 0 0 0.22588 1 538 538 0 0 1 + 53276 22944 35378 35399 52136 52136 -0.11952966409580768 WDAAGWYEGP 10 Unmodified _WDAAGWYEGP_ 0 0 0 ENSG00000175029|ENST00000309035|CTBP2 ENSG00000175029|ENST00000309035|CTBP2 ENSG00000175029|ENST00000309035|CTBP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3361206054688 2 576.243264 1150.47197 NaN NaN NaN NaN NaN NaN NaN 52.2 1 49.317 48.817 49.817 -2.8824 0 0 0 0.22588 1 9929 9929 10.824 1.4408 1 53277 6381 35379 35400 52137 52137 -0.09724297350180677 WDDCDDCG 8 Unmodified _WDDCDDCG_ 0 0 0 REV__ENSG00000165632|ENST00000344293|TAF3 REV__ENSG00000165632|ENST00000344293|TAF3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.170166015625 3 310.086437 927.237482 NaN NaN NaN NaN NaN NaN NaN 4.0149 1 2.975 2.475 3.475 -1.04 0 0 0 0.21486 1 3 3 0 0 1 + 53278 17787 35380 35401 52138 52138 -0.22904679492569358 WDDFSRFN 8 Unmodified _WDDFSRFN_ 0 0 0 ENSG00000092850|ENST00000207457|TEKT2 ENSG00000092850|ENST00000207457|TEKT2 ENSG00000092850|ENST00000207457|TEKT2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7781372070312 2 543.735606 1085.45666 NaN NaN NaN NaN NaN NaN NaN 147.32 1 142.63 142.13 143.13 -4.6868 0 0 0 0.23782 1 29229 29229 0.12286 0.11948 1 53279 1841 35381 35402 52139 52139 -0.08265164147383075 WDEKAVTRRV 10 Unmodified _WDEKAVTRRV_ 0 0 0 HVCN1|p.A13V|1|0.07|ENSG00000122986|chr12:110661432-110661432|G/A|missense_variant HVCN1|p.A13V|1|0.07|ENSG00000122986|chr12:110661432-110661432|G/A|missense_variant HVCN1|p.A13V|1|0.07|ENSG00000122986|chr12:110661432-110661432|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7714233398438 2 630.346386 1258.67822 NaN NaN NaN NaN NaN NaN NaN 46.832 1 43.89 43.39 44.39 -2.9421 0 0 0 2.8426 1 8521 8521 0.013265 0 1 53280 11927 35382 35403 52140 52140 0.05922695548929369 WDFLRQLFVPY 11 Unmodified _WDFLRQLFVPY_ 0 0 0 nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1;ENST00000481758.1_1_1:154965104-154965510:+|nuORF nc|ENSG00000160688|Q8NFF5-3|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3912353515625 2 742.390262 1482.76597 NaN NaN NaN NaN NaN NaN NaN 143.96 1 139.01 138.51 139.51 -4.9445 0 0 0 0.22632 1 27793 27793 0.0059557 0 1 53281 5260 35383 35404 52141 52141 0.043898964196841916 WDFWRKMYLRE 11 Unmodified _WDFWRKMYLRE_ 0 0 0 ENSG00000159915|ENST00000683810|ZNF233 ENSG00000159915|ENST00000683810|ZNF233 ENSG00000159915|ENST00000683810|ZNF233 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3466186523438 2 815.403378 1628.7922 NaN NaN NaN NaN NaN NaN NaN 171.5 1 171.5 171 172 0 0 0 0 0.23698 1 35333 35333 2.2828 1.9757 1 53282 5225 35384 35405 52142 52142 0.0029584231954231655 WDHTWHRKRRY 11 Unmodified _WDHTWHRKRRY_ 0 0 0 REV__ENST00000307720.3_1_4:159640431-159642568:-|nuORF REV__ENST00000307720.3_1_4:159640431-159642568:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.775390625 3 547.61503 1639.82326 NaN NaN NaN NaN NaN NaN NaN 160.85 1 160.85 160.35 161.35 0 0 0 0 0.23698 1 32298 32298 0.094841 0 1 + 53283 20451 35385 35406 52143 52143 0.02894176468612386 WDKRRPIFHQT 11 Unmodified _WDKRRPIFHQT_ 0 0 0 REV__ENST00000503463.5_1_17:46908399-46925578:+|nuORF REV__ENST00000503463.5_1_17:46908399-46925578:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.39697265625 2 742.399484 1482.78442 NaN NaN NaN NaN NaN NaN NaN 122.11 1 122.11 121.61 122.61 0 0 0 0 0.22632 1 24077 24077 0.026206 0.025642 1 + 53284 16330 35386 35407 52144 52144 0.062334511142580595 WDLTHIPSI 9 Unmodified _WDLTHIPSI_ 0 0 0 REV__tr|U7T5N9|U7T5N9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00122PE=4SV=1 REV__tr|U7T5N9|U7T5N9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00122PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2740478515625 2 541.287474 1080.5604 0.40432 0.00021885 -0.35218 -0.00019063 0.052143 2.8224E-05 541.7890069281915 109.33 0.65909 109.33 108.95 109.61 0 28 18 2 0 0 0 0.25976 2 21501 21501;21521 17.113 16.1 1 1425500 + 53285 25418 35387 35408 52145;52146 52145 0.023337429602861448 WDLYCWREAAT 11 Unmodified _WDLYCWREAAT_ 0 0 0 SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant;SPATA31E1|p.S1369Kfs*11|1|0.12|ENSG00000177992|chr9:87888593-87888594|GC/-|frameshift_variant;ENSG00000177992|ENST00000325643|SPATA31E1 SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 471.88037109375 3 471.88005 1412.61832 NaN NaN NaN NaN NaN NaN NaN 9.7356 1 9.7356 9.2356 10.236 0 0 0 0 0.23698 1 1158 1158 0.08335 0.08335 1 53286 6550 35388 35409 52147 52147 -0.07148363176588646 WDQNGAQP 8 Unmodified _WDQNGAQP_ 0 0 0 REV__ENST00000567034.5_1_16:30198826-30199264:+|nuORF REV__ENST00000567034.5_1_16:30198826-30199264:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22857666015625 2 458.201399 914.388245 NaN NaN NaN NaN NaN NaN NaN 73.595 1 73.595 73.095 74.095 0 0 0 0 0.18481 1 14283 14283 6.1918 4.4496 1 + 53287 23125 35389 35410 52148 52148 -0.07237408727235106 WDRRRRRNRTR 11 Unmodified _WDRRRRRNRTR_ 0 0 0 REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.3367919921875 3 543.312344 1626.9152 NaN NaN NaN NaN NaN NaN NaN 163.11 1 157.92 157.42 158.42 -5.1878 0 0 0 0.22632 1 31721 31721 0.172 0.077159 1 + 53288 20894 35390 35411 52149 52149 0.1268227960567856 WDRSALPA 8 Unmodified _WDRSALPA_ 0 0 0 REV__nc|ENSG00000136487|P01242-2|GH2 REV__nc|ENSG00000136487|P01242-2|GH2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2376403808594 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 139.69 1 134.84 134.34 135.34 -4.8492 0 0 0 0.21452 1 26935 26935 13.508 0.97634 1 + 53289 24052 35391 35412 52150 52150 0.00036345066166632023 WDRVRVFDRE 10 Unmodified _WDRVRVFDRE_ 0 0 0 ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B ENST00000457179.5_1_22:22317029-22324763:-|nuORF ENST00000457179.5_1_22:22317029-22324763:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2408447265625 3 459.905587 1376.69493 NaN NaN NaN NaN NaN NaN NaN 21.252 1 19.531 19.031 20.031 -1.7211 0 0 0 2.8426 1 3313 3313 0.043787 0.042406 1 53290 1923 35392 35413 52151 52151 0.021651964348848196 WDRWHYPKGQ 10 Unmodified _WDRWHYPKGQ_ 0 0 0 REV__HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant REV__HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.22406005859375 3 458.223028 1371.64725 NaN NaN NaN NaN NaN NaN NaN 78.776 1 78.776 78.276 79.276 0 0 0 0 2.8426 1 15333 15333 6.6304 6.3318 1 + 53291 14582 35393 35414 52152 52152 -0.023704577653234082 WDSLWQMNCDC 11 Unmodified _WDSLWQMNCDC_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 700.7540893554688 2 700.75704 1399.49953 NaN NaN NaN NaN NaN NaN NaN 167.84 1 162.95 162.45 163.45 -4.8916 0 0 0 0.22632 1 33054 33054 0.0059557 0 1 + 53292 16823 35394 35415 52153 52153 -0.18424221468126234 WDVNTGEM 8 Unmodified _WDVNTGEM_ 0 0 0 nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000166167|Q9Y297-2|BTRC nc|ENSG00000166167|Q9Y297-2|BTRC MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 476.23956298828125 2 476.197467 950.380382 NaN NaN NaN NaN NaN NaN NaN 178.8 1 174.01 173.51 174.51 -4.7898 0 0 0 0.21486 1 36582 36582 0.69038 0 1 53293 5696 35395 35416 52154 52154 -0.09679304039013914 WDYDQMIKLMV 11 Unmodified _WDYDQMIKLMV_ 0 0 0 REV__GRIN2A|p.L425*|1|0.24|ENSG00000183454|chr16:9849811-9849811|G/-|frameshift_variant REV__GRIN2A|p.L425*|1|0.24|ENSG00000183454|chr16:9849811-9849811|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23162841796875 3 481.233324 1440.67814 NaN NaN NaN NaN NaN NaN NaN 7.7353 1 6.7205 6.2205 7.2205 -1.0148 0 0 0 0.23698 1 659 659 0.094841 0 1 + 53294 18838 35396 35417 52155 52155 -0.024568085575992882 WDYRHVPPRPA 11 Unmodified _WDYRHVPPRPA_ 0 0 0 ENST00000320954.10_2_3:33184083-33184542:+|nuORF ENST00000320954.10_2_3:33184083-33184542:+|nuORF ENST00000320954.10_2_3:33184083-33184542:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24346923828125 3 465.242311 1392.7051 NaN NaN NaN NaN NaN NaN NaN 133.72 1 129.08 128.58 129.58 -4.6399 0 0 0 0.22632 1 26367 26367 0.58532 0 1 53295 8715 35397 35418 52156 52156 0.024458041601519653 WEANHQSSTWG 11 Unmodified _WEANHQSSTWG_ 0 0 0 ENST00000479672.5_1_3:100429900-100432609:+|nuORF;ENST00000240851.8_1_3:100428529-100432612:+|nuORF ENST00000479672.5_1_3:100429900-100432609:+|nuORF ENST00000479672.5_1_3:100429900-100432609:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 434.8744201660156 3 434.854781 1301.54251 NaN NaN NaN NaN NaN NaN NaN 9.2387 1 8.1742 7.6742 8.6742 -1.0645 0 0 0 0.23698 1 976 976 0 0 1 53296 8187 35398 35419 52157 52157 -0.09619624032529828 WECTTYWY 8 Unmodified _WECTTYWY_ 0 0 0 ENST00000532998.5_1_17:8077791-8078022:-|nuORF;ENST00000526920.1_1_17:8077791-8079276:-|nuORF;ENST00000529756.1_1_17:8077523-8079276:-|nuORF;ENSG00000179029|ENST00000437139|TMEM107;nc|ENSG00000179029|Q6UX40-4|TMEM107 ENST00000532998.5_1_17:8077791-8078022:-|nuORF ENST00000532998.5_1_17:8077791-8078022:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.334228515625 2 576.228768 1150.44298 0.076369 4.4006E-05 -0.89094 -0.00051339 -0.81458 -0.00046938 576.2282198030163 62.95 1.2332 59.989 59.5 60.733 -2.9614 86 35 3 0 0 0 0.72861 1 12177 12177 10.183 0.10947 1 3993900 53297 6604 35399 35420 52158 52158 -0.12622157970849912 WECTTYWY 8 Unmodified _WECTTYWY_ 0 0 0 ENST00000532998.5_1_17:8077791-8078022:-|nuORF;ENST00000526920.1_1_17:8077791-8079276:-|nuORF;ENST00000529756.1_1_17:8077523-8079276:-|nuORF;ENSG00000179029|ENST00000437139|TMEM107;nc|ENSG00000179029|Q6UX40-4|TMEM107 ENST00000532998.5_1_17:8077791-8078022:-|nuORF ENST00000532998.5_1_17:8077791-8078022:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3331909179688 2 576.228768 1150.44298 0.25786 0.00014859 -1.0027 -0.0005778 -0.74487 -0.00042921 576.2281062318832 63.254 1.1697 59.997 59.436 60.606 -3.2567 79 33 3 0 0 0 0.69887 1 11845 11845 14.582 1.5392 1 4861000 53298 6604 35399 35420 52159 52159 -0.12622157970849912 WEDRFYLLLFY 11 Unmodified _WEDRFYLLLFY_ 0 0 0 PTGFR|p.S206Y|1|0.06|ENSG00000122420|chr1:78493360-78493360|C/A|missense_variant PTGFR|p.S206Y|1|0.06|ENSG00000122420|chr1:78493360-78493360|C/A|missense_variant PTGFR|p.S206Y|1|0.06|ENSG00000122420|chr1:78493360-78493360|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2666015625 3 522.26601 1563.7762 NaN NaN NaN NaN NaN NaN NaN 112.14 1 107.72 107.22 108.22 -4.4231 0 0 0 0.22632 1 22102 22102 1.4551 0 1 53299 12846 35400 35421 52160 52160 0.016864593542777584 WEEILEEKEKV 11 Unmodified _WEEILEEKEKV_ 0 0 0 REV__ENST00000461132.1_1_9:94871020-94877616:-|nuORF REV__ENST00000461132.1_1_9:94871020-94877616:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 477.8982238769531 3 477.917047 1430.72931 NaN NaN NaN NaN NaN NaN NaN 10.273 1 10.273 9.7731 10.773 0 0 0 0 0.23698 1 1273 1273 0 0 1 + 53300 14543 35401 35422 52161 52161 0.031175550124316942 WEHDQRHLRRH 11 Unmodified _WEHDQRHLRRH_ 0 0 0 REV__ENST00000402696.7_1_3:133478127-133483039:+|nuORF REV__ENST00000402696.7_1_3:133478127-133483039:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6935424804688 3 523.934651 1568.78212 NaN NaN NaN NaN NaN NaN NaN 157.56 1 157.56 157.06 158.06 0 0 0 0 0.22632 1 31625 31625 0.58532 0.079364 1 + 53301 21364 35402 35423 52162 52162 0.020484154291352752 WEIFLFLAI 9 Unmodified _WEIFLFLAI_ 0 0 0 ENSG00000140505|ENST00000343932|CYP1A2 ENSG00000140505|ENST00000343932|CYP1A2 ENSG00000140505|ENST00000343932|CYP1A2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3303833007812 2 576.328611 1150.64267 NaN NaN NaN NaN NaN NaN NaN 101.7 1 101.7 101.2 102.2 0 0 0 0 0.19632 1 19967 19967 0.0033805 0.0019993 1 53302 4306 35403 35424 52163 52163 0.07337265039222984 WEIFLFLAI 9 Unmodified _WEIFLFLAI_ 0 0 0 ENSG00000140505|ENST00000343932|CYP1A2 ENSG00000140505|ENST00000343932|CYP1A2 ENSG00000140505|ENST00000343932|CYP1A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3273315429688 2 576.328611 1150.64267 NaN NaN NaN NaN NaN NaN NaN 123.12 1 118.54 118.04 119.04 -4.5757 0 0 0 0.19656 1 24273 24273 0.12781 0.054551 1 53303 4306 35403 35424 52164 52164 0.07337265039222984 WEIFLFLAI 9 Unmodified _WEIFLFLAI_ 0 0 0 ENSG00000140505|ENST00000343932|CYP1A2 ENSG00000140505|ENST00000343932|CYP1A2 ENSG00000140505|ENST00000343932|CYP1A2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3314819335938 2 576.328611 1150.64267 NaN NaN NaN NaN NaN NaN NaN 141.59 1 136.94 136.44 137.44 -4.6493 0 0 0 0.19656 1 27971 27971 0.073264 0 1 53304 4306 35403 35424 52165 52165 0.07337265039222984 WEIFLFLAI 9 Unmodified _WEIFLFLAI_ 0 0 0 ENSG00000140505|ENST00000343932|CYP1A2 ENSG00000140505|ENST00000343932|CYP1A2 ENSG00000140505|ENST00000343932|CYP1A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3255615234375 2 576.328611 1150.64267 0.4946 0.00028505 2.8077 0.0016182 3.3023 0.0019032 576.3281046129106 164.93 0.11005 159.87 159.79 159.9 -5.0648 4 2 2 0 0 0 0.44856 1 32203 32203 0.40827 0 1 4952000 53305 4306 35403 35424 52166 52166 0.07337265039222984 WEINDSVLTQR 11 Unmodified _WEINDSVLTQR_ 0 0 0 REV__nc|ENSG00000157193|Q14114-4|LRP8 REV__nc|ENSG00000157193|Q14114-4|LRP8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7596740722656 3 454.233369 1359.67828 0.2177 9.8886E-05 -0.44827 -0.00020362 -0.23057 -0.00010473 454.23308499872064 86.457 0.42307 82.507 82.261 82.684 -3.9503 27 11 4 0 0 0 0.9614 1 16431 16431 5.8681 1.7515 1 1973500 + 53306 17287 35404 35425 52167 52167 0.012826507582758495 WEINDSVLTQR 11 Unmodified _WEINDSVLTQR_ 0 0 0 REV__nc|ENSG00000157193|Q14114-4|LRP8 REV__nc|ENSG00000157193|Q14114-4|LRP8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7596740722656 3 454.233369 1359.67828 0.04088 1.8569E-05 0.19915 9.0462E-05 0.24003 0.00010903 454.2332052715421 86.224 1.0198 82.495 81.853 82.872 -3.7289 46 28 4 0 0 0 0.9614 1 16478 16478 5.8681 1.1522 1 1695300 + 53307 17287 35404 35425 52168 52168 0.012826507582758495 WEINDSVLTQR 11 Unmodified _WEINDSVLTQR_ 0 0 0 REV__nc|ENSG00000157193|Q14114-4|LRP8 REV__nc|ENSG00000157193|Q14114-4|LRP8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 454.233369 1359.67828 -0.1597 -7.2543E-05 -0.17372 -7.8911E-05 -0.33343 -0.00015145 454.23352573879845 86.322 0.50556 82.595 82.296 82.802 -3.727 0.062737 2.3851E-05 NaN 5.8681 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2324300 + 53308 17287 35404 35425 0.012826507582758495 WEIRYMYFYFL 11 Unmodified _WEIRYMYFYFL_ 0 0 0 nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-5|NF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.77978515625 3 544.263612 1629.76901 NaN NaN NaN NaN NaN NaN NaN 100.56 1 96.264 95.764 96.764 -4.297 0 0 0 0.22632 1 19236 19236 0.50596 0.47975 1 53309 12538 35405 35426 52169 52169 -0.020685965178017796 WEKFQDPE 8 Unmodified _WEKFQDPE_ 0 0 0 ENST00000374619.1_1_1:23520938-23521079:-|nuORF ENST00000374619.1_1_1:23520938-23521079:-|nuORF ENST00000374619.1_1_1:23520938-23521079:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20196533203125 3 360.166185 1077.47673 NaN NaN NaN NaN NaN NaN NaN 138.08 1 133.44 132.94 133.94 -4.6413 0 0 0 0.21486 1 27256 27256 2.9952 0 1 53310 9223 35406 35427 52170 52170 -0.05891413207450569 WEKKVIEY 8 Unmodified _WEKKVIEY_ 0 0 0 ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;ENST00000466047.5_1_10:121609046-121633060:-|nuORF ENSG00000197771|ENST00000369077|MCMBP ENSG00000197771|ENST00000369077|MCMBP MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7708740234375 2 547.797675 1093.5808 0.22984 0.0001259 0.26165 0.00014333 0.49149 0.00026924 547.7977241351849 64.012 0.45048 61.014 60.839 61.29 -2.9975 21 12 2 0 0 0 0.21798 2 12395 12356;12395 43.772 28.934 1 1740800 53311 7398 35407 35428 52171;52172 52172 0.03774913620077314 WEKKVIEY 8 Unmodified _WEKKVIEY_ 0 0 0 ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;ENST00000466047.5_1_10:121609046-121633060:-|nuORF ENSG00000197771|ENST00000369077|MCMBP ENSG00000197771|ENST00000369077|MCMBP MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7721557617188 2 547.797675 1093.5808 0.35497 0.00019445 -0.042685 -2.3383E-05 0.31229 0.00017107 547.797515173414 64.185 0.49 60.928 60.711 61.201 -3.2567 24 13 3 0 0 0 0.88839 1 12076 12076 22.736 22.736 1 1687100 53312 7398 35407 35428 52173 52173 0.03774913620077314 WEKVSADHSTT 11 Unmodified _WEKVSADHSTT_ 0 0 0 REV__ENST00000502962.5_1_4:10077004-10094774:-|nuORF REV__ENST00000502962.5_1_4:10077004-10094774:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7674560546875 2 630.796392 1259.57823 NaN NaN NaN NaN NaN NaN NaN 75.194 1 71.56 71.06 72.06 -3.6337 0 0 0 0.22632 1 14294 14294 0.58532 0.31993 1 + 53313 14270 35408 35429 52174 52174 -0.041175865755576524 WEPHRVTY 8 Unmodified _WEPHRVTY_ 0 0 0 REV__ENST00000395936.5_2_17:15134236-15138539:-|nuORF REV__ENST00000395936.5_2_17:15134236-15138539:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.793701171875 2 544.269616 1086.52468 0.22418 0.00012201 -1.1311 -0.0006156 -0.90688 -0.00049359 544.2688855947763 93.795 1.1055 89.804 89.278 90.384 -3.9907 56 23 3 0 0 0 0.60622 1 18417 18417 21.747 0 1 9283700 + 53314 15150 35409 35430 52175 52175 -0.015122944967288277 WEQCRDDVT 9 Unmodified _WEQCRDDVT_ 0 0 0 LURAP1|p.Q233R|1|0.31|ENSG00000171357|chr1:46220198-46220198|A/G|missense_variant LURAP1|p.Q233R|1|0.31|ENSG00000171357|chr1:46220198-46220198|A/G|missense_variant LURAP1|p.Q233R|1|0.31|ENSG00000171357|chr1:46220198-46220198|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3115844726562 2 576.242938 1150.47132 NaN NaN NaN NaN NaN NaN NaN 63.221 1 59.965 59.465 60.465 -3.2567 0 0 0 0.21065 1 11865 11865 20.454 2.3073 1 53315 12099 35410 35431 52176 52176 -0.09789460061574573 WEQFQWGRDM 10 Unmodified _WEQFQWGRDM_ 0 0 0 REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53582763671875 3 461.536395 1381.58736 NaN NaN NaN NaN NaN NaN NaN 99.995 1 99.995 99.495 100.5 0 0 0 0 2.8426 1 19614 19614 1.9064 1.9058 1 + 53316 22457 35411 35432 52177 52177 -0.0881751649085345 WEQFQWGRDM 10 Unmodified _WEQFQWGRDM_ 0 0 0 REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.53594970703125 3 461.536395 1381.58736 NaN NaN NaN NaN NaN NaN NaN 155.54 1 155.54 155.04 156.04 0 0 0 0 2.8426 1 31181 31181 0.69767 0.67146 1 + 53317 22457 35411 35432 52178 52178 -0.0881751649085345 WEQRRWLRWKP 11 Unmodified _WEQRRWLRWKP_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.790771484375 3 547.635542 1639.8848 0.39522 0.00021644 -1.3422 -0.00073506 -0.94702 -0.00051862 547.96772160008 146.48 0.17114 141.48 141.36 141.53 -5 6 4 2 0 0 0 0.96227 1 28327 28327 0.094841 0.094841 1 1030600 + 53318 24768 35412 35433 52179 52179 0.09045108167902072 WERPKRRWKRK 11 Unmodified _WERPKRRWKRK_ 0 0 0 LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 813.4862060546875 2 813.484217 1624.95388 NaN NaN NaN NaN NaN NaN NaN 178.19 1 173.32 172.82 173.82 -4.8686 0 0 0 0.22632 1 35473 35473 0 0 1 53319 12075 35413 35434 52180 52180 0.16640192187469438 WERRNFCMGRE 11 Unmodified _WERRNFCMGRE_ 0 0 0 ENST00000355451.7_1_7:44424639-44424711:-|nuORF ENST00000355451.7_1_7:44424639-44424711:-|nuORF ENST00000355451.7_1_7:44424639-44424711:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.4003295898438 2 742.337712 1482.66087 NaN NaN NaN NaN NaN NaN NaN 173.47 1 168.59 168.09 169.09 -4.881 0 0 0 0.23698 1 34489 34489 2.2828 0.95324 1 53320 8955 35414 35435 52181 52181 -0.0611529132004307 WERRWWLWLQR 11 Unmodified _WERRWWLWLQR_ 0 0 0 REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 572.3992919921875 3 572.307426 1713.90045 0.29094 0.00016651 2.8043 0.0016049 3.0952 0.0017714 572.6445155395148 162.82 0.17773 162.82 162.72 162.9 0 5 4 2 0 0 0 0.96228 1 32778 32778 0 0 1 5595300 + 53321 23739 35415 35436 52182 52182 0.07205394684979183 WERYKREWERY 11 Unmodified _WERYKREWERY_ 0 0 0 REV__RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant REV__RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 567.5668334960938 3 567.614584 1699.82192 0.52088 0.00029566 3.5145 0.0019949 4.0354 0.0022906 567.6148845078806 166.85 0.17017 161.96 161.81 161.98 -4.8916 5 4 2 0 0 0 0.66313 1 32737 32737 0 0 1 6365400 + 53322 15683 35416 35437 52183 52183 4.975892352376832E-06 WERYKREWERY 11 Unmodified _WERYKREWERY_ 0 0 0 REV__RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant REV__RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 567.2530517578125 3 567.614584 1699.82192 0.52088 0.00029566 3.5145 0.0019949 4.0354 0.0022906 567.6148845078806 166.85 0.17017 161.96 161.81 161.98 -4.8916 5 4 2 0 0 0 0.89136 1 32745 32745 0.0072825 0.0072825 1 6365400 + 53323 15683 35416 35437 52184 52184 4.975892352376832E-06 WERYRYLANWL 11 Unmodified _WERYRYLANWL_ 0 0 0 REV__ENST00000474652.1_1_2:73441746-73447117:+|nuORF REV__ENST00000474652.1_1_2:73441746-73447117:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.399169921875 2 785.401692 1568.78883 NaN NaN NaN NaN NaN NaN NaN 140.28 1 140.28 139.78 140.78 0 0 0 0 0.22632 1 27922 27922 0.50596 0.50596 1 + 53324 22086 35417 35438 52185 52185 0.0271891553718433 WESWSTEDKNT 11 Unmodified _WESWSTEDKNT_ 0 0 0 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.533203125 3 461.533484 1381.57862 NaN NaN NaN NaN NaN NaN NaN 38.07 1 38.07 37.57 38.57 0 0 0 0 0.22632 1 7052 7052 1.4551 0 1 53325 1028 35418 35439 52186 52186 -0.09690211646329772 WETGRSAL 8 Unmodified _WETGRSAL_ 0 0 0 REV__PCDH20|p.L126Tfs*30|1|0.19|ENSG00000280165|chr13:61413724-61413725|-/C|frameshift_variant REV__PCDH20|p.L126Tfs*30|1|0.19|ENSG00000280165|chr13:61413724-61413725|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2350158691406 2 460.235242 918.45593 -0.11734 -5.4003E-05 0.31977 0.00014717 0.20244 9.3168E-05 460.2353625625157 76.504 0.74693 73.089 72.608 73.355 -3.4151 45 20 3 0 0 0 8448 1 14875 14875 3.5871 1.8448 1 2378600 + 53326 24439 35419 35440 52187 52187 -0.006559587964375169 WETGRSAL 8 Unmodified _WETGRSAL_ 0 0 0 REV__PCDH20|p.L126Tfs*30|1|0.19|ENSG00000280165|chr13:61413724-61413725|-/C|frameshift_variant REV__PCDH20|p.L126Tfs*30|1|0.19|ENSG00000280165|chr13:61413724-61413725|-/C|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2353210449219 2 460.235242 918.45593 0.16126 7.4216E-05 0.75298 0.00034655 0.91424 0.00042076 460.2355601077665 76.665 0.80586 73.031 72.444 73.25 -3.6337 45 22 3 0 0 0 8448 1 14600 14600 3.5871 0.94402 1 1895000 + 53327 24439 35419 35440 52188 52188 -0.006559587964375169 WETVITSL 8 Unmodified _WETVITSL_ 0 0 0 REV__ENSG00000197375|ENST00000245407|SLC22A5 REV__ENSG00000197375|ENST00000245407|SLC22A5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.155029296875 3 316.839409 947.496398 -1.5557 -0.0004929 -0.19681 -6.2356E-05 -1.7525 -0.00055526 316.83896523347664 20.424 0.17613 18.788 18.675 18.851 -1.6351 7 4 2 0 0 0 0.88811 1 3147 3147 0.45834 0 1 145440 + 53328 19331 35420 35441 52189 52189 0.02054962803322269 WEVGAAIPPF 10 Unmodified _WEVGAAIPPF_ 0 0 0 ENST00000430373.1_1_1:112289271-112289442:+|nuORF ENST00000430373.1_1_1:112289271-112289442:+|nuORF ENST00000430373.1_1_1:112289271-112289442:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7880249023438 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 149.75 1 145.01 144.51 145.51 -4.7323 0 0 0 2.8426 1 29736 29736 1.9275 0.71267 1 53329 9775 35421 35442 52190 52190 0.01522644448596111 WEVRSVYA 8 Unmodified _WEVRSVYA_ 0 0 0 SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|19|2|sense SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|19|2|sense SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|19|2|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.1932067871094 3 337.174903 1008.50288 -0.040335 -1.36E-05 0.27812 9.3776E-05 0.23779 8.0177E-05 337.17497381861244 43.231 1.5163 40.464 40.046 41.563 -2.7661 61 42 2 0 0 0 8448 1 8001 8001 6.2058 2.9245 1 1256300 53330 25800 35422 35443 52191 52191 -0.0010309924529110503 WEVRSVYA 8 Unmodified _WEVRSVYA_ 0 0 0 SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|19|2|sense SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|19|2|sense SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|19|2|sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 337.174903 1008.50288 -0.35336 -0.00011914 0.49675 0.00016749 0.14339 4.8348E-05 337.17501745904525 43.477 1.1943 40.758 40.408 41.602 -2.7191 0.080176 -0.00011736 NaN 6.2058 51 33 2 NaN NaN NaN NaN 0 NaN NaN 0 1296800 53331 25800 35422 35443 -0.0010309924529110503 WEVRSVYA 8 Unmodified _WEVRSVYA_ 0 0 0 SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|19|2|sense SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|19|2|sense SVA_D_dup1229|chr17:30522805-30524227:+|1.675571116190744|0.476847412502663|1.81|481.0|19|2|sense MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 337.174903 1008.50288 -0.73744 -0.00024865 1.0382 0.00035006 0.30078 0.00010142 337.17521410407966 43.559 0.87291 40.812 40.591 41.464 -2.7475 0.13358 0.00043036 NaN 6.2058 41 24 2 NaN NaN NaN NaN 0 NaN NaN 0 919590 53332 25800 35422 35443 -0.0010309924529110503 WEWRRKRWRLA 11 Unmodified _WEWRRKRWRLA_ 0 0 0 REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7816772460938 3 548.31117 1641.91168 0.21935 0.00012027 0.97395 0.00053403 1.1933 0.0006543 548.3123160476184 163.09 0.17798 157.95 157.89 158.06 -5.1438 6 4 2 0 0 0 0.89134 1 31734 31734 0.172 0.172 1 10536000 + 53333 21852 35423 35444 52192 52192 0.11640216779119328 WEWRRKRWRLA 11 Unmodified _WEWRRKRWRLA_ 0 0 0 REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7828979492188 3 548.31117 1641.91168 0.48837 0.00026778 2.0293 0.0011127 2.5177 0.0013805 548.3126372455423 156.94 0.17659 151.67 151.62 151.8 -5.2712 5 4 2 0 0 0 0.89134 1 30454 30454 0.094841 0.094841 1 1946400 + 53334 21852 35423 35444 52193 52193 0.11640216779119328 WEWVHRKTWYE 11 Unmodified _WEWVHRKTWYE_ 0 0 0 REV__nc|ENSG00000135374|Q9UKW6-3|ELF5 REV__nc|ENSG00000135374|Q9UKW6-3|ELF5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 810.3907470703125 2 810.391325 1618.7681 NaN NaN NaN NaN NaN NaN NaN 56.126 1 53.232 52.732 53.732 -2.8944 0 0 0 0.23698 1 10748 10748 0.30703 0 1 + 53335 16264 35424 35445 52194 52194 -0.016536748424869074 WEWYRRLQSQL 11 Unmodified _WEWYRRLQSQL_ 0 0 0 REV__ENST00000596373.1_1_19:53683054-53693528:-|nuORF REV__ENST00000596373.1_1_19:53683054-53693528:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2713623046875 3 522.272158 1563.79465 NaN NaN NaN NaN NaN NaN NaN 98.708 1 94.438 93.938 94.938 -4.2692 0 0 0 0.22632 1 18870 18870 0.172 0 1 + 53336 23381 35425 35446 52195 52195 0.03530014048851626 WEYGHPAP 8 Unmodified _WEYGHPAP_ 0 0 0 ENST00000518881.5_1_8:23425823-23429007:+|nuORF ENST00000518881.5_1_8:23425823-23429007:+|nuORF ENST00000518881.5_1_8:23425823-23429007:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7347412109375 2 478.716685 955.418816 NaN NaN NaN NaN NaN NaN NaN 118.01 1 118.01 117.51 118.51 0 0 0 0 0.23025 1 23244 23244 0.68139 0 1 53337 10812 35426 35447 52196 52196 -0.06067630342204211 WFAAPINP 8 Unmodified _WFAAPINP_ 0 0 0 L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|90|3|anti-sense L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|90|3|anti-sense L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|90|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.237548828125 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 86.915 1 83.186 82.686 83.686 -3.7289 0 0 0 0.23366 1 16625 16625 0.25148 0 1 53338 12061 35427 35448 52197 52197 0.004384345598964501 WFARGQKSLG 10 Unmodified _WFARGQKSLG_ 0 0 0 REV__nc|ENSG00000135835|Q5VZ46-2|KIAA1614 REV__nc|ENSG00000135835|Q5VZ46-2|KIAA1614 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.318359375 2 575.311815 1148.60908 0.14952 8.6023E-05 1.2081 0.00069505 1.3577 0.00078108 575.8150848382692 136.1 0.4548 131.2 130.96 131.41 -4.8951 16 12 3 0 0 0 0.51405 1 26158 26158 3.8763 3.0314 1 1301000 + 53339 16291 35428 35449 52198 52198 0.04071656320047623 WFDFLDWDT 9 Unmodified _WFDFLDWDT_ 0 0 0 ENST00000553813.1_1_14:74327258-74343813:+|nuORF ENST00000553813.1_1_14:74327258-74343813:+|nuORF ENST00000553813.1_1_14:74327258-74343813:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7664794921875 2 622.766571 1243.51859 NaN NaN NaN NaN NaN NaN NaN 6.7912 1 5.7465 5.2465 6.2465 -1.0446 0 0 0 0.23508 1 512 512 0 0 1 53340 11207 35429 35450 52199 52199 -0.09342857518913661 WFDRFWPNRHH 11 Unmodified _WFDRFWPNRHH_ 0 0 0 REV__GRM3|p.N345H|1|0.27|ENSG00000198822|chr7:86786825-86786825|A/C|missense_variant REV__GRM3|p.N345H|1|0.27|ENSG00000198822|chr7:86786825-86786825|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2732543945312 3 533.256843 1596.7487 NaN NaN NaN NaN NaN NaN NaN 175.3 1 170.51 170.01 171.01 -4.7898 0 0 0 0.22632 1 35845 35845 0.026206 0.025642 1 + 53341 23595 35430 35451 52200 52200 -0.025805863427422082 WFDYHGHMCI 10 Unmodified _WFDYHGHMCI_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;ENST00000416636.2_1_7:23624683-23625604:-|nuORF;ENST00000497188.1_1_1:155234069-155238352:-|nuORF nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.21685791015625 3 436.847804 1307.52158 NaN NaN NaN NaN NaN NaN NaN 84.09 1 84.09 83.59 84.59 0 0 0 0 0.22588 1 16395 16395 2.086 0 1 53342 6468 35431 35452 52201 52201 -0.11987628937390582 WFEECHEKFGE 11 Unmodified _WFEECHEKFGE_ 0 0 0 REV__ENSG00000013392|ENST00000369724|RWDD2A REV__ENSG00000013392|ENST00000369724|RWDD2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2435607910156 3 480.86781 1439.5816 0.25824 0.00012418 -0.29446 -0.0001416 -0.036217 -1.7416E-05 480.867473289404 66.685 0.65958 63.358 62.954 63.613 -3.3268 38 18 3 0 0 0 0.66124 1 12560 12560 0.094841 0 1 2410300 + 53343 13948 35432 35453 52202 52202 -0.12060659793178274 WFEYRKRTFKH 11 Unmodified _WFEYRKRTFKH_ 0 0 0 ENSG00000188312|ENST00000375587|CENPP ENSG00000188312|ENST00000375587|CENPP ENSG00000188312|ENST00000375587|CENPP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2725830078125 3 533.284398 1596.83137 NaN NaN NaN NaN NaN NaN NaN 80.624 1 76.785 76.285 77.285 -3.8392 0 0 0 0.22632 1 15305 15305 0.094841 0 1 53344 7161 35433 35454 52203 52203 0.05682310665361001 WFEYRKRTFKH 11 Unmodified _WFEYRKRTFKH_ 0 0 0 ENSG00000188312|ENST00000375587|CENPP ENSG00000188312|ENST00000375587|CENPP ENSG00000188312|ENST00000375587|CENPP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2684936523438 3 533.284398 1596.83137 NaN NaN NaN NaN NaN NaN NaN 137.67 1 132.83 132.33 133.33 -4.84 0 0 0 0.22632 1 26527 26527 0.00056442 0 1 53345 7161 35433 35454 52204 52204 0.05682310665361001 WFFVWFCFLF 10 Unmodified _WFFVWFCFLF_ 0 0 0 ENST00000542104.5_2_12:65089076-65089520:+|nuORF ENST00000542104.5_2_12:65089076-65089520:+|nuORF ENST00000542104.5_2_12:65089076-65089520:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2317810058594 3 481.231584 1440.67292 NaN NaN NaN NaN NaN NaN NaN 179.48 1 174.69 174.19 175.19 -4.7898 0 0 0 0.22588 1 36719 36719 0 0 1 53346 11086 35434 35455 52205 52205 -0.02978699567233889 WFFWFWNDLNF 11 Unmodified _WFFWFWNDLNF_ 0 0 0 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2733764648438 3 541.24695 1620.71902 NaN NaN NaN NaN NaN NaN NaN 61.903 1 58.941 58.441 59.441 -2.9614 0 0 0 0.22632 1 11937 11937 0.026206 0 1 53347 7081 35435 35456 52206 52206 -0.06650963131437493 WFFWFWNDLNF 11 Unmodified _WFFWFWNDLNF_ 0 0 0 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3677978515625 2 811.366787 1620.71902 NaN NaN NaN NaN NaN NaN NaN 176.28 1 171.49 170.99 171.99 -4.7898 0 0 0 0.22632 1 36046 36046 0.094841 0.087559 1 53348 7081 35435 35456 52207 52207 -0.06650963131437493 WFFWFWNDLNF 11 Unmodified _WFFWFWNDLNF_ 0 0 0 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3632202148438 2 811.366787 1620.71902 NaN NaN NaN NaN NaN NaN NaN 177.08 1 172.29 171.79 172.79 -4.7898 0 0 0 0.23698 1 36216 36216 0.26902 0.26902 1 53349 7081 35435 35456 52208 52208 -0.06650963131437493 WFFWFWNDLNF 11 Unmodified _WFFWFWNDLNF_ 0 0 0 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.364990234375 2 811.366787 1620.71902 NaN NaN NaN NaN NaN NaN NaN 84.728 1 80.818 80.318 81.318 -3.9093 0 0 0 0.22632 1 16109 16109 0.094841 0 1 53350 7081 35435 35456 52209 52209 -0.06650963131437493 WFFWFWNDLNF 11 Unmodified _WFFWFWNDLNF_ 0 0 0 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2779541015625 3 541.24695 1620.71902 NaN NaN NaN NaN NaN NaN NaN 170.65 1 165.74 165.24 166.24 -4.9149 0 0 0 0.22632 1 33752 33752 0.094841 0 1 53351 7081 35435 35456 52210 52210 -0.06650963131437493 WFFWFWNDLNF 11 Unmodified _WFFWFWNDLNF_ 0 0 0 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.36669921875 2 811.366787 1620.71902 NaN NaN NaN NaN NaN NaN NaN 48.821 1 45.814 45.314 46.314 -3.0068 0 0 0 0.22632 1 8941 8941 0.094841 0.094841 1 53352 7081 35435 35456 52211 52211 -0.06650963131437493 WFFWFWNDLNF 11 Unmodified _WFFWFWNDLNF_ 0 0 0 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.364501953125 2 811.366787 1620.71902 NaN NaN NaN NaN NaN NaN NaN 50.116 1 47.11 46.61 47.61 -3.0068 0 0 0 0.23698 1 9203 9203 0.30703 0.03801 1 53353 7081 35435 35456 52212 52212 -0.06650963131437493 WFFWFWNDLNF 11 Unmodified _WFFWFWNDLNF_ 0 0 0 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3651123046875 2 811.366787 1620.71902 NaN NaN NaN NaN NaN NaN NaN 125.97 1 121.32 120.82 121.82 -4.6495 0 0 0 0.22632 1 24237 24237 0.094841 0.094841 1 53354 7081 35435 35456 52213 52213 -0.06650963131437493 WFFWFWNDLNF 11 Unmodified _WFFWFWNDLNF_ 0 0 0 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.36328125 2 811.366787 1620.71902 NaN NaN NaN NaN NaN NaN NaN 156.22 1 150.95 150.45 151.45 -5.2712 0 0 0 0.23698 1 30294 30294 0.26902 0 1 53355 7081 35435 35456 52214 52214 -0.06650963131437493 WFITLSSQLWL 11 Unmodified _WFITLSSQLWL_ 0 0 0 REV__ENST00000470811.5_1_3:156544101-156697065:+|nuORF REV__ENST00000470811.5_1_3:156544101-156697065:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2538757324219 3 465.255334 1392.74417 NaN NaN NaN NaN NaN NaN NaN 92.868 1 92.868 92.368 93.368 0 0 0 0 0.22632 1 18162 18162 3.3108 3.1388 1 + 53356 22034 35436 35457 52215 52215 0.06351091671149334 WFKCTRHRVSY 11 Unmodified _WFKCTRHRVSY_ 0 0 0 nc|ENSG00000145794|Q96KG7-2|MEGF10;MEGF10|p.N964Mfs*2|1|0.49|ENSG00000145794|chr5:127449129-127449129|A/-|frameshift_variant;ENSG00000145794|ENST00000503335|MEGF10 nc|ENSG00000145794|Q96KG7-2|MEGF10 nc|ENSG00000145794|Q96KG7-2|MEGF10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3779907226562 2 741.874788 1481.73502 0.39667 0.00029428 1.307 0.00096959 1.7036 0.0012639 741.8757951889389 61.713 0.44949 58.474 58.24 58.69 -3.2395 30 12 3 0 0 0 0.76088 1 11586 11586 7.609 1.4032 1 3448400 53357 4621 35437 35458 52216 52216 0.013424198338043425 WFKLLGRI 8 Unmodified _WFKLLGRI_ 0 0 0 REV__nc|ENSG00000066027|Q15172-2|PPP2R5A REV__nc|ENSG00000066027|Q15172-2|PPP2R5A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.8897399902344 3 344.883284 1031.62802 NaN NaN NaN NaN NaN NaN NaN 23.236 1 23.236 22.736 23.736 0 0 0 0 0.21486 1 3957 3957 0.40072 0 1 + 53358 14197 35438 35459 52217 52217 0.11347237681752631 WFNFLIFIFF 10 Unmodified _WFNFLIFIFF_ 0 0 0 ENST00000465065.5_1_3:180323515-180323665:+|nuORF ENST00000465065.5_1_3:180323515-180323665:+|nuORF ENST00000465065.5_1_3:180323515-180323665:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2482604980469 3 465.249632 1392.72707 NaN NaN NaN NaN NaN NaN NaN 149.03 1 149.03 148.53 149.53 0 0 0 0 2.8426 1 29833 29833 1.9064 1.8802 1 53359 10114 35439 35460 52218 52218 0.0464121585596331 WFQNRRAKFRR 11 Unmodified _WFQNRRAKFRR_ 0 0 0 nc|ENSG00000116132|P54821-2|PRRX1;ENSG00000116132|ENST00000239461|PRRX1;ENSG00000167157|ENST00000372469|PRRX2 nc|ENSG00000116132|P54821-2|PRRX1 nc|ENSG00000116132|P54821-2|PRRX1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2770385742188 3 522.29552 1563.86473 -0.59204 -0.00030922 3.0333 0.0015843 2.4413 0.0012751 522.2973652426498 148.13 0.13986 142.98 142.9 143.04 -5.1558 5 3 2 0 0 0 0.6625 1 28673 28673 0.026206 0.026206 1 1732500 53360 2908 35440 35461 52219 52219 0.10535357227922759 WFQNRRTKWRN 11 Unmodified _WFQNRRTKWRN_ 0 0 0 NKX6-1|p.K293N|1|0.03|ENSG00000163623|chr4:84493514-84493514|C/G|missense_variant NKX6-1|p.K293N|1|0.03|ENSG00000163623|chr4:84493514-84493514|C/G|missense_variant NKX6-1|p.K293N|1|0.03|ENSG00000163623|chr4:84493514-84493514|C/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 796.4213256835938 2 796.421282 1590.82801 NaN NaN NaN NaN NaN NaN NaN 177.95 1 177.95 177.45 178.45 0 0 0 0 0.22632 1 36868 36868 0 0 1 53361 12691 35441 35462 52220 52220 0.056230606114013426 WFREVEEQYRR 11 Unmodified _WFREVEEQYRR_ 0 0 0 REV__ENST00000379982.7_1_5:95091424-95099296:+|nuORF REV__ENST00000379982.7_1_5:95091424-95099296:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2666015625 3 533.267184 1596.77972 NaN NaN NaN NaN NaN NaN NaN 173.78 1 168.89 168.39 169.39 -4.8811 0 0 0 0.22632 1 34562 34562 0.094841 0 1 + 53362 21147 35442 35463 52221 52221 0.005205221808182614 WFRRRRNQDRP 11 Unmodified _WFRRRRNQDRP_ 0 0 0 ENSG00000143418|ENST00000368954|CERS2;ENST00000559020.1_1_1:150940136-150940936:-|nuORF;ENST00000558501.5_1_19:8275630-8321979:+|nuORF;ENSG00000090661|ENST00000251363|CERS4;ENST00000557925.1_1_19:8315741-8320784:+|nuORF ENSG00000143418|ENST00000368954|CERS2;ENST00000557925.1_1_19:8315741-8320784:+|nuORF ENSG00000143418|ENST00000368954|CERS2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 529.8993530273438 3 529.622296 1585.84506 NaN NaN NaN NaN NaN NaN NaN 172.68 1 167.89 167.39 168.39 -4.7898 0 0 0 0.22632 1 35190 35190 0.0072825 0.0072825 1 53363 4484;11259 35443 35464 52222 52222 0.07556981217226166 WFSSRRARWRK 11 Unmodified _WFSSRRARWRK_ 0 0 0 PAX3|p.N269S|1|0.31|ENSG00000135903|chr2:222221374-222221374|T/C|missense_variant PAX3|p.N269S|1|0.31|ENSG00000135903|chr2:222221374-222221374|T/C|missense_variant PAX3|p.N269S|1|0.31|ENSG00000135903|chr2:222221374-222221374|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 512.618408203125 3 512.620004 1534.83818 NaN NaN NaN NaN NaN NaN NaN 162.82 1 157.68 157.18 158.18 -5.1438 0 0 0 0.22632 1 31653 31653 1.4074 1.2354 1 53364 12755 35444 35465 52223 52223 0.09215668336628369 WFWRMVKERFH 11 Unmodified _WFWRMVKERFH_ 0 0 0 REV__nc|ENSG00000119682|O15033-2|AREL1 REV__nc|ENSG00000119682|O15033-2|AREL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.278564453125 3 541.278479 1620.81361 NaN NaN NaN NaN NaN NaN NaN 178.38 1 173.51 173.01 174.01 -4.8686 0 0 0 0.22632 1 35514 35514 0 0 1 + 53365 15589 35445 35466 52224 52224 0.028032721389081416 WFWWLEYYYN 10 Unmodified _WFWWLEYYYN_ 0 0 0 REV__nc|ENSG00000166272|Q9NX94|WBP1L REV__nc|ENSG00000166272|Q9NX94|WBP1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3798217773438 2 785.34552 1568.67649 NaN NaN NaN NaN NaN NaN NaN 137.07 1 137.07 136.57 137.57 0 0 0 0 0.22588 1 27172 27172 1.6526 0.32309 1 + 53366 17836 35446 35467 52225 52225 -0.08510358259650275 WFWWLEYYYN 10 Unmodified _WFWWLEYYYN_ 0 0 0 REV__nc|ENSG00000166272|Q9NX94|WBP1L REV__nc|ENSG00000166272|Q9NX94|WBP1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3939208984375 2 785.34552 1568.67649 NaN NaN NaN NaN NaN NaN NaN 137.27 1 137.27 136.77 137.77 0 0 0 0 0.22588 1 27222 27222 1.8442 0.51471 1 + 53367 17836 35446 35467 52226 52226 -0.08510358259650275 WFWWLEYYYN 10 Unmodified _WFWWLEYYYN_ 0 0 0 REV__nc|ENSG00000166272|Q9NX94|WBP1L REV__nc|ENSG00000166272|Q9NX94|WBP1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.39990234375 2 785.34552 1568.67649 NaN NaN NaN NaN NaN NaN NaN 145.56 1 145.56 145.06 146.06 0 0 0 0 0.22588 1 29092 29092 0.45834 0.10771 1 + 53368 17836 35446 35467 52227 52227 -0.08510358259650275 WFWWLEYYYN 10 Unmodified _WFWWLEYYYN_ 0 0 0 REV__nc|ENSG00000166272|Q9NX94|WBP1L REV__nc|ENSG00000166272|Q9NX94|WBP1L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.393310546875 2 785.34552 1568.67649 NaN NaN NaN NaN NaN NaN NaN 142.07 1 137.05 136.55 137.55 -5.0261 0 0 0 0.22588 1 27374 27374 1.6526 0.32309 1 + 53369 17836 35446 35467 52228 52228 -0.08510358259650275 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3970336914062 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 80.824 1 80.824 80.324 81.324 0 0 0 0 0.22632 1 15737 15737 0 0 1 53370 11828 35447 35468 52229 52229 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3970336914062 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 80.844 1 80.844 80.344 81.344 0 0 0 0 0.23698 1 15740 15740 0 0 1 53371 11828 35447 35468 52230 52230 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3969116210938 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 87.238 1 87.238 86.738 87.738 0 0 0 0 0.22632 1 17029 17029 0 0 1 53372 11828 35447 35468 52231 52231 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3956298828125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 108.54 1 108.54 108.04 109.04 0 0 0 0 0.22632 1 21345 21345 0 0 1 53373 11828 35447 35468 52232 52232 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3956298828125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 108.57 1 108.57 108.07 109.07 0 0 0 0 0.23698 1 21349 21349 0 0 1 53374 11828 35447 35468 52233 52233 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3983154296875 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 118.69 1 118.69 118.19 119.19 0 0 0 0 0.23698 1 23376 23376 0 0 1 53375 11828 35447 35468 52234 52234 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.395263671875 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 131.49 1 131.49 130.99 131.99 0 0 0 0 0.22632 1 25995 25995 0 0 1 53376 11828 35447 35468 52235 52235 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3965454101562 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 152.94 1 152.94 152.44 153.44 0 0 0 0 0.22632 1 30640 30640 0 0 1 53377 11828 35447 35468 52236 52236 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3965454101562 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 152.96 1 152.96 152.46 153.46 0 0 0 0 0.23698 1 30643 30643 0 0 1 53378 11828 35447 35468 52237 52237 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3972778320312 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 163.24 1 163.24 162.74 163.74 0 0 0 0 0.22632 1 32883 32883 0 0 1 53379 11828 35447 35468 52238 52238 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.397705078125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 167.53 1 167.53 167.03 168.03 0 0 0 0 0.22632 1 34239 34239 0 0 1 53380 11828 35447 35468 52239 52239 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3973388671875 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 172.45 1 172.45 171.95 172.95 0 0 0 0 0.22632 1 35602 35602 0 0 1 53381 11828 35447 35468 52240 52240 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3974609375 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 176.27 1 176.27 175.77 176.77 0 0 0 0 0.22632 1 36516 36516 0 0 1 53382 11828 35447 35468 52241 52241 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3985595703125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 25.606 1 23.958 23.458 24.458 -1.6482 0 0 0 0.22632 1 4495 4495 0 0 1 53383 11828 35447 35468 52242 52242 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3953247070312 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 40.273 1 37.638 37.138 38.138 -2.6348 0 0 0 0.22632 1 7501 7501 0 0 1 53384 11828 35447 35468 52243 52243 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3958129882812 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 84.187 1 80.523 80.023 81.023 -3.6641 0 0 0 0.22632 1 16459 16459 0 0 1 53385 11828 35447 35468 52244 52244 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3958129882812 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 84.212 1 80.548 80.048 81.048 -3.6641 0 0 0 0.23698 1 16462 16462 0 0 1 53386 11828 35447 35468 52245 52245 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3969116210938 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 90.665 1 86.806 86.306 87.306 -3.8595 0 0 0 0.22632 1 17740 17740 0 0 1 53387 11828 35447 35468 52246 52246 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3967895507812 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 100.44 1 96.28 95.78 96.78 -4.1594 0 0 0 0.22632 1 19741 19741 0 0 1 53388 11828 35447 35468 52247 52247 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3967895507812 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 100.46 1 96.298 95.798 96.798 -4.1594 0 0 0 0.23698 1 19744 19744 0 0 1 53389 11828 35447 35468 52248 52248 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.395751953125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 105.87 1 101.61 101.11 102.11 -4.2638 0 0 0 0.22632 1 20840 20840 0 0 1 53390 11828 35447 35468 52249 52249 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.395751953125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 105.89 1 101.62 101.12 102.12 -4.2638 0 0 0 0.23698 1 20843 20843 0 0 1 53391 11828 35447 35468 52250 52250 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3975219726562 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 112.29 1 107.84 107.34 108.34 -4.4539 0 0 0 0.22632 1 22129 22129 0 0 1 53392 11828 35447 35468 52251 52251 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3976440429688 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 116.96 1 112.47 111.97 112.97 -4.486 0 0 0 0.22632 1 23057 23057 0 0 1 53393 11828 35447 35468 52252 52252 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3976440429688 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 116.97 1 112.48 111.98 112.98 -4.486 0 0 0 0.23698 1 23058 23058 0 0 1 53394 11828 35447 35468 52253 52253 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3978881835938 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 121.43 1 116.88 116.38 117.38 -4.5476 0 0 0 0.22632 1 23936 23936 0 0 1 53395 11828 35447 35468 52254 52254 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3978881835938 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 121.44 1 116.9 116.4 117.4 -4.5476 0 0 0 0.23698 1 23939 23939 0 0 1 53396 11828 35447 35468 52255 52255 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3960571289062 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 151.44 1 146.69 146.19 147.19 -4.7523 0 0 0 0.22632 1 30085 30085 0 0 1 53397 11828 35447 35468 52256 52256 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.397216796875 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 154.12 1 149.35 148.85 149.85 -4.7684 0 0 0 0.22632 1 30632 30632 0 0 1 53398 11828 35447 35468 52257 52257 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3999633789062 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 155.56 1 150.79 150.29 151.29 -4.7791 0 0 0 0.22632 1 30924 30924 0 0 1 53399 11828 35447 35468 52258 52258 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.397216796875 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 158.29 1 153.49 152.99 153.99 -4.7952 0 0 0 0.22632 1 31477 31477 0 0 1 53400 11828 35447 35468 52259 52259 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3995971679688 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 160.72 1 155.93 155.43 156.43 -4.7952 0 0 0 0.22632 1 31964 31964 0 0 1 53401 11828 35447 35468 52260 52260 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3985595703125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 171.47 1 166.68 166.18 167.18 -4.7898 0 0 0 0.22632 1 34868 34868 0 0 1 53402 11828 35447 35468 52261 52261 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3984985351562 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 174.29 1 169.5 169 170 -4.7898 0 0 0 0.22632 1 35601 35601 0 0 1 53403 11828 35447 35468 52262 52262 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.39697265625 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 54.367 1 51.232 50.732 51.732 -3.1352 0 0 0 0.22632 1 10028 10028 0.094841 0.094841 1 53404 11828 35447 35468 52263 52263 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3965454101562 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 79.271 1 75.466 74.966 75.966 -3.8048 0 0 0 0.22632 1 15039 15039 0 0 1 53405 11828 35447 35468 52264 52264 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4005126953125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 81.679 1 77.84 77.34 78.34 -3.8392 0 0 0 0.22632 1 15509 15509 0.094841 0.094841 1 53406 11828 35447 35468 52265 52265 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3984375 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 84.254 1 80.345 79.845 80.845 -3.9093 0 0 0 0.22632 1 16013 16013 0 0 1 53407 11828 35447 35468 52266 52266 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3984375 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 84.268 1 80.359 79.859 80.859 -3.9093 0 0 0 0.23698 1 16015 16015 0 0 1 53408 11828 35447 35468 52267 52267 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3980102539062 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 87.146 1 83.196 82.696 83.696 -3.9503 0 0 0 0.22632 1 16596 16596 0 0 1 53409 11828 35447 35468 52268 52268 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3955078125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 87.882 1 83.887 83.387 84.387 -3.9953 0 0 0 0.22632 1 16738 16738 0 0 1 53410 11828 35447 35468 52269 52269 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3955078125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 87.902 1 83.906 83.406 84.406 -3.9953 0 0 0 0.23698 1 16741 16741 0 0 1 53411 11828 35447 35468 52270 52270 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3955078125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 92.749 1 88.605 88.105 89.105 -4.1435 0 0 0 0.22632 1 17674 17674 0 0 1 53412 11828 35447 35468 52271 52271 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3955078125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 92.772 1 88.629 88.129 89.129 -4.1435 0 0 0 0.23698 1 17677 17677 0 0 1 53413 11828 35447 35468 52272 52272 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3971557617188 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 107.85 1 103.44 102.94 103.94 -4.4121 0 0 0 0.22632 1 20691 20691 0 0 1 53414 11828 35447 35468 52273 52273 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3953857421875 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 120.22 1 115.57 115.07 116.07 -4.645 0 0 0 0.22632 1 23076 23076 0 0 1 53415 11828 35447 35468 52274 52274 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3953857421875 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 120.24 1 115.59 115.09 116.09 -4.645 0 0 0 0.23698 1 23079 23079 0 0 1 53416 11828 35447 35468 52275 52275 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3951416015625 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 125.65 1 120.88 120.38 121.38 -4.7681 0 0 0 0.22632 1 24116 24116 0 0 1 53417 11828 35447 35468 52276 52276 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3974609375 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 142.7 1 137.67 137.17 138.17 -5.0261 0 0 0 0.22632 1 27506 27506 0 0 1 53418 11828 35447 35468 52277 52277 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3956909179688 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 149.48 1 144.28 143.78 144.78 -5.1994 0 0 0 0.22632 1 28956 28956 0 0 1 53419 11828 35447 35468 52278 52278 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.397705078125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 157.77 1 152.49 151.99 152.99 -5.2854 0 0 0 0.22632 1 30622 30622 0 0 1 53420 11828 35447 35468 52279 52279 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3971557617188 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 166.13 1 161.15 160.65 161.65 -4.9811 0 0 0 0.22632 1 32531 32531 0 0 1 53421 11828 35447 35468 52280 52280 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.4013061523438 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 54.716 1 51.579 51.079 52.079 -3.1377 0 0 0 0.22632 1 10135 10135 0.094841 0.094841 1 53422 11828 35447 35468 52281 52281 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3965454101562 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 120.13 1 115.66 115.16 116.16 -4.467 0 0 0 0.22632 1 23128 23128 0 0 1 53423 11828 35447 35468 52282 52282 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3965454101562 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 120.16 1 115.69 115.19 116.19 -4.467 0 0 0 0.23698 1 23132 23132 0 0 1 53424 11828 35447 35468 52283 52283 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3963623046875 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 149.01 1 143.95 143.45 144.45 -5.0595 0 0 0 0.22632 1 28871 28871 0 0 1 53425 11828 35447 35468 52284 52284 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3950805664062 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 152.43 1 147.26 146.76 147.76 -5.1759 0 0 0 0.22632 1 29545 29545 0 0 1 53426 11828 35447 35468 52285 52285 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3956298828125 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 165.95 1 161 160.5 161.5 -4.9484 0 0 0 0.22632 1 32467 32467 0 0 1 53427 11828 35447 35468 52286 52286 -0.03231602694381763 WFWWYWQKENI 11 Unmodified _WFWWYWQKENI_ 0 0 0 FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant FUCA2|p.K82N|1|0.34|ENSG00000001036|chr6:143507403-143507403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3997192382812 2 843.398618 1684.78268 NaN NaN NaN NaN NaN NaN NaN 166.79 1 161.89 161.39 162.39 -4.8916 0 0 0 0.22632 1 32717 32717 0 0 1 53428 11828 35447 35468 52287 52287 -0.03231602694381763 WFYLHRGY 8 Unmodified _WFYLHRGY_ 0 0 0 REV__MGST2|p.K103Nfs*8|2|0.22|ENSG00000085871|chr4:139703529-139703529|A/-|frameshift_variant REV__MGST2|p.K103Nfs*8|2|0.22|ENSG00000085871|chr4:139703529-139703529|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.21282958984375 3 381.190776 1140.5505 NaN NaN NaN NaN NaN NaN NaN 63.666 1 60.409 59.909 60.909 -3.2567 0 0 0 0.21486 1 11947 11947 7.9102 2.6133 1 + 53429 14480 35448 35469 52288 52288 -0.01415400254427368 WGAPPPPPP 9 Unmodified _WGAPPPPPP_ 0 0 0 nc|ENSG00000177943|Q6UXC1-3|MAMDC4 nc|ENSG00000177943|Q6UXC1-3|MAMDC4 nc|ENSG00000177943|Q6UXC1-3|MAMDC4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2383728027344 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 78.402 1 74.939 74.439 75.439 -3.4633 0 0 0 0.23508 1 15307 15307 9.3474 0 1 53430 12486 35449 35470 52289 52289 0.004384345598964501 WGAPPPPPP 9 Unmodified _WGAPPPPPP_ 0 0 0 nc|ENSG00000177943|Q6UXC1-3|MAMDC4 nc|ENSG00000177943|Q6UXC1-3|MAMDC4 nc|ENSG00000177943|Q6UXC1-3|MAMDC4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2381591796875 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 78.479 1 74.68 74.18 75.18 -3.7991 0 0 0 0.23508 1 14884 14884 9.3474 1.4373 1 53431 12486 35449 35470 52290 52290 0.004384345598964501 WGAWPRGRCCW 11 Unmodified _WGAWPRGRCCW_ 0 0 0 ENST00000393203.2_1_1:117452739-117484357:+|nuORF ENST00000393203.2_1_1:117452739-117484357:+|nuORF ENST00000393203.2_1_1:117452739-117484357:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 459.8858642578125 3 459.874576 1376.6019 NaN NaN NaN NaN NaN NaN NaN 9.5016 1 9.5016 9.0016 10.002 0 0 0 0 0.23698 1 1105 1105 0 0 1 53432 9386 35450 35471 52291 52291 -0.07133722823664357 WGILHSICLY 10 Unmodified _WGILHSICLY_ 0 0 0 REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2 REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3019409179688 2 602.812802 1203.61105 0.38659 0.00023304 -0.037323 -2.2499E-05 0.34927 0.00021054 602.8127614905554 21.585 0.40884 21.585 21.395 21.804 0 31 11 4 0 0 0 0.91149 1 3654 3654 4.3292 4.3292 1 9301400 + 53433 17659 35451 35472 52292 52292 0.01738949013633828 WGILHSICLY 10 Unmodified _WGILHSICLY_ 0 0 0 REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2 REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 602.812802 1203.61105 0.26959 0.00016251 -0.022153 -1.3354E-05 0.24744 0.00014916 602.8127540659226 23.048 0.37874 21.594 21.405 21.784 -1.4535 0.018555 -0.00019801 NaN 4.3292 35 10 4 NaN NaN NaN NaN 0 NaN NaN 0 11855000 + 53434 17659 35451 35472 0.01738949013633828 WGKAGFIF 8 Unmodified _WGKAGFIF_ 0 0 0 ENST00000266095.9_1_22:32024065-32026805:-|nuORF ENST00000266095.9_1_22:32024065-32026805:-|nuORF ENST00000266095.9_1_22:32024065-32026805:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 309.1911315917969 3 309.169201 924.485774 NaN NaN NaN NaN NaN NaN NaN 133.49 1 133.49 132.99 133.99 0 0 0 0 0.21486 1 26412 26412 0 0 1 53435 8371 35452 35473 52293 52293 0.02051024939578383 WGKMPRRGV 9 Unmodified _WGKMPRRGV_ 0 0 0 ENST00000427025.6_2_6:138893369-138893522:-|nuORF ENST00000427025.6_2_6:138893369-138893522:-|nuORF ENST00000427025.6_2_6:138893369-138893522:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 362.89251708984375 3 362.871161 1085.59165 NaN NaN NaN NaN NaN NaN NaN 9.5042 1 8.4695 7.9695 8.9695 -1.0347 0 0 0 0.23508 1 975 975 0 0 1 53436 9735 35453 35474 52294 52294 0.052280375133932466 WGLARRGL 8 Unmodified _WGLARRGL_ 0 0 0 nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1 nc|ENSG00000223802|P27544-2|CERS1 nc|ENSG00000223802|P27544-2|CERS1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2479248046875 2 464.777411 927.540269 NaN NaN NaN NaN NaN NaN NaN 133.17 1 128.3 127.8 128.8 -4.8617 0 0 0 0.22684 1 25581 25581 3.5871 0 1 53437 7779 35454 35475 52295 52295 0.07360036810996462 WGLFLVELF 9 Unmodified _WGLFLVELF_ 0 0 0 REV__ENST00000264930.9_2_5:1051864-1052263:-|nuORF REV__ENST00000264930.9_2_5:1051864-1052263:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2122497558594 3 375.211066 1122.61137 NaN NaN NaN NaN NaN NaN NaN 48.03 1 45.161 44.661 45.661 -2.869 0 0 0 0.19636 1 9082 9082 2.4985 0.59211 1 + 53438 20234 35455 35476 52296 52296 0.05496692005135628 WGLGAPDCIG 10 Unmodified _WGLGAPDCIG_ 0 0 0 REV__ENST00000563159.5_1_16:68267455-68268061:-|nuORF REV__ENST00000563159.5_1_16:68267455-68268061:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 495.23248291015625 2 494.731477 987.448402 0.17148 8.4837E-05 1.3598 0.00067272 1.5313 0.00075756 494.7329956526549 27.253 1.3666 25.608 24.743 26.11 -1.6456 99 38 3 0 0 0 0.88157 1 4405 4405 7.9102 0 1 24425000 + 53439 23073 35456 35477 52297 52297 -0.04582434388362344 WGLVGLKF 8 Unmodified _WGLVGLKF_ 0 0 0 REV__ENST00000394361.8_1_16:57596005-57608989:+|nuORF REV__ENST00000394361.8_1_16:57596005-57608989:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2330627441406 2 460.273638 918.532724 NaN NaN NaN NaN NaN NaN NaN 157.62 1 152.34 151.84 152.84 -5.2854 0 0 0 0.21486 1 30589 30589 8.5933 2.2392 1 + 53440 17377 35457 35478 52298 52298 0.07019884490705408 WGPYWTMWLTC 11 Unmodified _WGPYWTMWLTC_ 0 0 0 REV__ENSG00000088053|ENST00000310373|GP6 REV__ENSG00000088053|ENST00000310373|GP6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.86700439453125 3 481.878993 1442.61515 NaN NaN NaN NaN NaN NaN NaN 10.598 1 9.5047 9.0047 10.005 -1.0936 0 0 0 0.23698 1 1214 1214 0.094841 0 1 + 53441 14508 35458 35479 52299 52299 -0.08845329554947057 WGRRLRPLLRA 11 Unmodified _WGRRLRPLLRA_ 0 0 0 nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1;ENST00000574941.5_1_16:3728534-3767509:-|nuORF;TRAP1|p.K439Vfs*3|1|0.06|ENSG00000126602|chr16:3666038-3666039|TT/-|frameshift_variant nc|ENSG00000126602|Q12931-2|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2437744140625 3 465.293228 1392.85786 NaN NaN NaN NaN NaN NaN NaN 138.96 1 138.96 138.46 139.46 0 0 0 0 0.22632 1 27610 27610 3.0723 1.6171 1 53442 3439 35459 35480 52300 52300 0.17714044347417257 WGVRELSD 8 Unmodified _WGVRELSD_ 0 0 0 ENST00000331569.5_1_8:37557227-37557494:+|nuORF ENST00000331569.5_1_8:37557227-37557494:+|nuORF ENST00000331569.5_1_8:37557227-37557494:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2431335449219 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 98.432 1 94.162 93.662 94.662 -4.2692 0 0 0 0.23182 1 18815 18815 2.3796 0 1 53443 8779 35460 35481 52301 52301 -0.015319761420073519 WGVYKLYSDN 10 Unmodified _WGVYKLYSDN_ 0 0 0 REV__nc|ENSG00000101972|Q8N3U4|STAG2;REV__nc|ENSG00000118007|Q8WVM7-2|STAG1 REV__nc|ENSG00000101972|Q8N3U4|STAG2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7805786132812 2 622.800946 1243.58734 NaN NaN NaN NaN NaN NaN NaN 146.37 1 146.37 145.87 146.87 0 0 0 0 0.22588 1 29266 29266 6.2058 1.8765 1 + 53444 14812;15535 35461 35482 52302 52302 -0.024711932191848973 WHAQTQSWKRN 11 Unmodified _WHAQTQSWKRN_ 0 0 0 ENST00000545251.6_1_1:175130206-175135705:-|nuORF ENST00000545251.6_1_1:175130206-175135705:-|nuORF ENST00000545251.6_1_1:175130206-175135705:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2428894042969 3 481.24097 1440.70108 NaN NaN NaN NaN NaN NaN NaN 56.045 1 53.15 52.65 53.65 -2.8944 0 0 0 0.22632 1 10732 10732 3.0723 0 1 53445 11117 35462 35483 52303 52303 -0.0016428533360794972 WHCDSDDDC 9 Unmodified _WHCDSDDDC_ 0 0 0 LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant;LRP1B|p.R3957Kfs*11|2|0.15|ENSG00000168702|chr2:140350819-140350820|-/T|frameshift_variant;LRP1B|p.N4135Mfs*14|1|0.13|ENSG00000168702|chr2:140324003-140324003|T/-|frameshift_variant;LRP1B|p.G4130Mfs*20|1|0.06|ENSG00000168702|chr2:140324019-140324020|-/AT|frameshift_variant;LRP1B|p.H4368Tfs*4|1|0.47|ENSG00000168702|chr2:140274465-140274465|C/-|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.I3028Nfs*2|1|0.39|ENSG00000168702|chr2:140492645-140492646|-/T|frameshift_variant;LRP1B|p.N3100Kfs*6|1|0.21|ENSG00000168702|chr2:140485468-140485469|-/T|frameshift_variant;LRP1B|p.Y3120*|1|0.16|ENSG00000168702|chr2:140485402-140485408|AGTAGGG/-|frameshift_variant;LRP1B|p.N3434Tfs*84|1|0.47|ENSG00000168702|chr2:140442617-140442617|T/-|frameshift_variant;LRP1B|p.K2543Nfs*42|1|0.08|ENSG00000168702|chr2:140536594-140536594|T/-|frameshift_variant;LRP1B|p.T2640Pfs*5|1|0.12|ENSG00000168702|chr2:140525952-140525952|T/-|frameshift_variant;LRP1B|p.C2682Vfs*15|1|0.3|ENSG00000168702|chr2:140516994-140516994|A/-|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7935791015625 2 548.160756 1094.30696 0.17172 9.413E-05 -3.3387 -0.0018301 -3.1669 -0.001736 548.1585587277864 130.81 0.21558 126.17 126.1 126.32 -4.6359 6 5 2 0 0 0 0.88433 1 25806 25806 0.6015 0.25087 1 794580 53446 5927 35463 35484 52304 52304 -0.2364222054379752 WHDKRSSG 8 Unmodified _WHDKRSSG_ 0 0 0 LOXHD1|p.R490Q|1|0.19|ENSG00000167210|chr18:46592547-46592547|C/T|missense_variant;LOXHD1|p.K601Rfs*17|1|0.18|ENSG00000167210|chr18:46579637-46579637|T/-|frameshift_variant;ENST00000335730.6_1_18:44089558-44181581:-|nuORF;nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1 LOXHD1|p.R490Q|1|0.19|ENSG00000167210|chr18:46592547-46592547|C/T|missense_variant LOXHD1|p.R490Q|1|0.19|ENSG00000167210|chr18:46592547-46592547|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.8841247558594 3 324.826386 971.457327 NaN NaN NaN NaN NaN NaN NaN 10.719 1 9.625 9.125 10.125 -1.0936 0 0 0 0.21486 1 1234 1234 0.45834 0 1 53447 5795 35464 35485 52305 52305 -0.029543247076617263 WHDYKLRW 8 Unmodified _WHDYKLRW_ 0 0 0 ENSG00000101204|ENST00000370263|CHRNA4 ENSG00000101204|ENST00000370263|CHRNA4 ENSG00000101204|ENST00000370263|CHRNA4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2833251953125 2 602.306532 1202.59851 NaN NaN NaN NaN NaN NaN NaN 27.46 1 25.704 25.204 26.204 -1.7552 0 0 0 0.23782 1 4598 4598 0.12286 0.096659 1 53448 2048 35465 35486 52306 52306 0.005316736655913701 WHEDPCDVFAY 11 Unmodified _WHEDPCDVFAY_ 0 0 0 REV__ENST00000515586.5_1_17:47075143-47113981:+|nuORF REV__ENST00000515586.5_1_17:47075143-47113981:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 461.52301025390625 3 461.188772 1380.54449 -0.56409 -0.00026015 0.099072 4.5691E-05 -0.46502 -0.00021446 461.1888523783404 107.69 0.93774 103.37 103.07 104.01 -4.32 41 26 2 0 0 0 0.81736 1 21276 21276 1.3296 1.3296 1 1996600 + 53449 17365 35466 35487 52307 52307 -0.1305633133893025 WHEDPCDVFAY 11 Unmodified _WHEDPCDVFAY_ 0 0 0 REV__ENST00000515586.5_1_17:47075143-47113981:+|nuORF REV__ENST00000515586.5_1_17:47075143-47113981:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5226135253906 3 461.188772 1380.54449 -0.11709 -5.4001E-05 -0.16756 -7.7278E-05 -0.28465 -0.00013128 461.1887894280881 107.9 0.93138 103.48 102.99 103.92 -4.4121 44 26 2 0 0 0 0.81736 1 20703 20703 1.3296 0 1 1711600 + 53450 17365 35466 35487 52308 52308 -0.1305633133893025 WHEECERY 8 Unmodified _WHEECERY_ 0 0 0 ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000577645.5_1_17:73221463-73221652:+|nuORF;ENST00000577561.1_1_17:73214398-73221993:+|nuORF;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000581104.5_1_17:73208151-73231006:+|nuORF ENST00000449421.6_1_17:73205928-73222855:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3321533203125 2 576.232373 1150.45019 NaN NaN NaN NaN NaN NaN NaN 38.112 1 35.744 35.244 36.244 -2.3682 0 0 0 0.23899 1 6768 6768 1.3295 0 1 53451 3359;11501 35467 35488 52309 52309 -0.11901425370410834 WHEKQYLFKRY 11 Unmodified _WHEKQYLFKRY_ 0 0 0 REV__SIPA1L1|p.F496L|1|0.36|ENSG00000197555|chr14:71589358-71589358|T/C|missense_variant REV__SIPA1L1|p.F496L|1|0.36|ENSG00000197555|chr14:71589358-71589358|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2808227539062 3 533.280654 1596.82013 NaN NaN NaN NaN NaN NaN NaN 166.51 1 161.53 161.03 162.03 -4.9811 0 0 0 0.22632 1 32646 32646 0.50596 0 1 + 53452 24619 35468 35489 52310 52310 0.045594885712489486 WHFREKVMRWF 11 Unmodified _WHFREKVMRWF_ 0 0 0 ENST00000557688.1_1_14:75130600-75131628:-|nuORF;nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1 ENST00000557688.1_1_14:75130600-75131628:-|nuORF ENST00000557688.1_1_14:75130600-75131628:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2789306640625 3 541.278479 1620.81361 NaN NaN NaN NaN NaN NaN NaN 49.559 1 46.678 46.178 47.178 -2.8811 0 0 0 0.22632 1 9390 9390 0.50596 0.41111 1 53453 3092 35469 35490 52311 52311 0.028032721388854043 WHFREKVMRWF 11 Unmodified _WHFREKVMRWF_ 0 0 0 ENST00000557688.1_1_14:75130600-75131628:-|nuORF;nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1 ENST00000557688.1_1_14:75130600-75131628:-|nuORF ENST00000557688.1_1_14:75130600-75131628:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2782592773438 3 541.278479 1620.81361 NaN NaN NaN NaN NaN NaN NaN 87.923 1 84.13 83.63 84.63 -3.7926 0 0 0 0.22632 1 17195 17195 3.0723 2.4869 1 53454 3092 35469 35490 52312 52312 0.028032721388854043 WHFREKVMRWF 11 Unmodified _WHFREKVMRWF_ 0 0 0 ENST00000557688.1_1_14:75130600-75131628:-|nuORF;nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1 ENST00000557688.1_1_14:75130600-75131628:-|nuORF ENST00000557688.1_1_14:75130600-75131628:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2776489257812 3 541.278479 1620.81361 NaN NaN NaN NaN NaN NaN NaN 125.54 1 120.78 120.28 121.28 -4.7681 0 0 0 0.22632 1 24096 24096 0.094841 0.068635 1 53455 3092 35469 35490 52313 52313 0.028032721388854043 WHGNCCEDYEH 11 Unmodified _WHGNCCEDYEH_ 0 0 0 ENSG00000111405|ENST00000422538|ENDOU ENSG00000111405|ENST00000422538|ENDOU ENSG00000111405|ENST00000422538|ENDOU MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 464.8236389160156 3 464.82925 1391.46592 NaN NaN NaN NaN NaN NaN NaN 9.6512 1 8.6166 8.1166 9.1166 -1.0347 0 0 0 0.23698 1 999 999 0 0 1 53456 2620 35470 35491 52314 52314 -0.21415506915673177 WHHPRAGP 8 Unmodified _WHHPRAGP_ 0 0 0 COL6A1|p.E705Rfs*98|2|0.58|ENSG00000142156|chr21:46002260-46002260|G/-|frameshift_variant COL6A1|p.E705Rfs*98|2|0.58|ENSG00000142156|chr21:46002260-46002260|G/-|frameshift_variant COL6A1|p.E705Rfs*98|2|0.58|ENSG00000142156|chr21:46002260-46002260|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 320.2665100097656 3 319.831582 956.472918 -1.2322 -0.00039409 -0.27067 -8.6567E-05 -1.5028 -0.00048066 319.83144049777746 22.684 1.0998 20.895 20.123 21.223 -1.7886 52 31 2 0 0 0 0.88811 1 3526 3526 0.45834 0 1 573820 53457 630 35471 35492 52315 52315 -0.007059933999698842 WHIPGNHERY 10 Unmodified _WHIPGNHERY_ 0 0 0 REV__CA13|p.L149Yfs*65|1|0.26|ENSG00000185015|chr8:85266695-85266695|T/-|frameshift_variant REV__CA13|p.L149Yfs*65|1|0.26|ENSG00000185015|chr8:85266695-85266695|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2359619140625 3 436.879261 1307.61595 NaN NaN NaN NaN NaN NaN NaN 90.478 1 86.619 86.119 87.119 -3.8595 0 0 0 0.22588 1 17700 17700 5.7834 0 1 + 53458 13230 35472 35493 52316 52316 -0.025550307993853494 WHIPGNHERY 10 Unmodified _WHIPGNHERY_ 0 0 0 REV__CA13|p.L149Yfs*65|1|0.26|ENSG00000185015|chr8:85266695-85266695|T/-|frameshift_variant REV__CA13|p.L149Yfs*65|1|0.26|ENSG00000185015|chr8:85266695-85266695|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2164001464844 3 436.879261 1307.61595 NaN NaN NaN NaN NaN NaN NaN 90.491 1 86.631 86.131 87.131 -3.8595 0 0 0 0.22588 1 17704 17704 8.9762 0.53194 1 + 53459 13230 35472 35493 52317 52317 -0.025550307993853494 WHITNILQ 8 Unmodified _WHITNILQ_ 0 0 0 ENSG00000115998|ENST00000264434|C2orf42 ENSG00000115998|ENST00000264434|C2orf42 ENSG00000115998|ENST00000264434|C2orf42 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 342.1957092285156 3 342.190665 1023.55016 NaN NaN NaN NaN NaN NaN NaN 111.98 1 107.75 107.25 108.25 -4.2289 0 0 0 0.21486 1 21558 21558 7.2892 0 1 53460 2899 35473 35494 52318 52318 0.03933180025705951 WHKGIPIEV 9 Unmodified _WHKGIPIEV_ 0 0 0 ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2073669433594 3 360.206315 1077.59712 NaN NaN NaN NaN NaN NaN NaN 109.09 1 104.91 104.41 105.41 -4.1826 0 0 0 0.19634 1 20994 20994 0.37959 0 1 53461 4973 35474 35495 52319 52319 0.06142039576843672 WHLLPLVH 8 Unmodified _WHLLPLVH_ 0 0 0 REV__ENST00000257829.7_1_11:34127180-34129760:+|nuORF REV__ENST00000257829.7_1_11:34127180-34129760:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 339.20306396484375 3 338.867633 1013.58107 -0.32595 -0.00011046 -0.34051 -0.00011539 -0.66646 -0.00022584 338.8671619399506 25.638 0.17921 25.638 25.561 25.74 0 5 4 2 0 0 0 8448 1 4474 4474 6.2058 0 1 627480 + 53462 20143 35475 35496 52320 52320 0.07482378130600864 WHLRKTRLLWR 11 Unmodified _WHLRKTRLLWR_ 0 0 0 REV__SLC24A1|p.N798Mfs*24|1|0.04|ENSG00000074621|chr15:65650539-65650539|A/-|frameshift_variant REV__SLC24A1|p.N798Mfs*24|1|0.04|ENSG00000074621|chr15:65650539-65650539|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.263916015625 3 522.316033 1563.92627 NaN NaN NaN NaN NaN NaN NaN 142.7 1 138.05 137.55 138.55 -4.656 0 0 0 0.22632 1 28209 28209 0.094841 0.068635 1 + 53463 14316 35476 35497 52321 52321 0.16686288927235182 WHPIPLSL 8 Unmodified _WHPIPLSL_ 0 0 0 REV__PTPN23|p.Y998Tfs*162|1|0.34|ENSG00000076201|chr3:47410785-47410785|C/-|frameshift_variant REV__PTPN23|p.Y998Tfs*162|1|0.34|ENSG00000076201|chr3:47410785-47410785|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7780456542969 2 481.776545 961.538538 NaN NaN NaN NaN NaN NaN NaN 154.97 1 150.19 149.69 150.69 -4.7791 0 0 0 0.23711 1 30808 30808 0.063987 0 1 + 53464 24528 35477 35498 52322 52322 0.056229830023767136 WHPLLHAP 8 Unmodified _WHPLLHAP_ 0 0 0 REV__ENST00000442440.1_1_20:23337408-23337708:-|nuORF REV__ENST00000442440.1_1_20:23337408-23337708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1803894042969 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 63.85 1 63.85 63.35 64.35 0 0 0 0 0.21486 1 12285 12285 1.8442 0.36234 1 + 53465 21719 35478 35499 52323 52323 0.03249232062410101 WHPLLHAP 8 Unmodified _WHPLLHAP_ 0 0 0 REV__ENST00000442440.1_1_20:23337408-23337708:-|nuORF REV__ENST00000442440.1_1_20:23337408-23337708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.1805419921875 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 68.188 1 64.652 64.152 65.152 -3.5362 0 0 0 0.21486 1 12809 12809 1.8442 1.3859 1 + 53466 21719 35478 35499 52324 52324 0.03249232062410101 WHPLLHAP 8 Unmodified _WHPLLHAP_ 0 0 0 REV__ENST00000442440.1_1_20:23337408-23337708:-|nuORF REV__ENST00000442440.1_1_20:23337408-23337708:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 324.1802978515625 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 68.03 1 64.703 64.203 65.203 -3.3268 0 0 0 0.21486 1 12837 12837 1.8442 0.6509 1 + 53467 21719 35478 35499 52325 52325 0.03249232062410101 WHRFRFNPKFY 11 Unmodified _WHRFRFNPKFY_ 0 0 0 ENSG00000175175|ENST00000308249|PPM1E;nc|ENSG00000175175|Q8WY54-3|PPM1E ENSG00000175175|ENST00000308249|PPM1E ENSG00000175175|ENST00000308249|PPM1E MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.276123046875 3 533.277355 1596.81024 NaN NaN NaN NaN NaN NaN NaN 114.73 1 110.18 109.68 110.68 -4.555 0 0 0 0.22632 1 22029 22029 0.172 0 1 53468 6391 35479 35500 52326 52326 0.035703453565474774 WHRRTHFWRTS 11 Unmodified _WHRRTHFWRTS_ 0 0 0 ENST00000322893.11_1_14:63483627-63512140:-|nuORF ENST00000322893.11_1_14:63483627-63512140:-|nuORF ENST00000322893.11_1_14:63483627-63512140:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3995971679688 2 785.40035 1568.78615 NaN NaN NaN NaN NaN NaN NaN 12.996 1 11.986 11.486 12.486 -1.0098 0 0 0 0.22632 1 1853 1853 0 0 1 53469 8723 35480 35501 52327 52327 0.024505049228537246 WHRRTHFWRTS 11 Unmodified _WHRRTHFWRTS_ 0 0 0 ENST00000322893.11_1_14:63483627-63512140:-|nuORF ENST00000322893.11_1_14:63483627-63512140:-|nuORF ENST00000322893.11_1_14:63483627-63512140:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.400634765625 2 785.40035 1568.78615 NaN NaN NaN NaN NaN NaN NaN 29.908 1 28.015 27.515 28.515 -1.8928 0 0 0 0.22632 1 5107 5107 0 0 1 53470 8723 35480 35501 52328 52328 0.024505049228537246 WHRRWRRRRR 10 Unmodified _WHRRWRRRRR_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2794799804688 3 540.985903 1619.93588 NaN NaN NaN NaN NaN NaN NaN 94.786 1 90.737 90.237 91.237 -4.0496 0 0 0 2.8426 1 18575 18575 0.13989 0.13989 1 53471 12155 35481 35502 52329 52329 0.15070914775969868 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.48291015625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 21.191 1 21.191 20.691 21.691 0 0 0 0 0.22632 1 3537 3537 0 0 1 53472 12155 35482 35503 52330 52330 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.482666015625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 68.135 1 68.135 67.635 68.635 0 0 0 0 0.22632 1 13172 13172 0 0 1 53473 12155 35482 35503 52331 52331 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.482666015625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 68.146 1 68.146 67.646 68.646 0 0 0 0 0.23698 1 13174 13174 0 0 1 53474 12155 35482 35503 52332 52332 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4846801757812 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 90.841 1 90.841 90.341 91.341 0 0 0 0 0.22632 1 17750 17750 0 0 1 53475 12155 35482 35503 52333 52333 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4846801757812 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 90.85 1 90.85 90.35 91.35 0 0 0 0 0.23698 1 17751 17751 0.30703 0 1 53476 12155 35482 35503 52334 52334 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.483154296875 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 94.193 1 94.193 93.693 94.693 0 0 0 0 0.22632 1 18443 18443 0.094841 0.094841 1 53477 12155 35482 35503 52335 52335 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.483154296875 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 94.209 1 94.209 93.709 94.709 0 0 0 0 0.23698 1 18445 18445 0 0 1 53478 12155 35482 35503 52336 52336 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4830932617188 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 118.18 1 118.18 117.68 118.68 0 0 0 0 0.22632 1 23280 23280 0.094841 0.094841 1 53479 12155 35482 35503 52337 52337 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4859619140625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 118.52 1 118.52 118.02 119.02 0 0 0 0 0.22632 1 23346 23346 0.094841 0.094841 1 53480 12155 35482 35503 52338 52338 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.484130859375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 119.5 1 119.5 119 120 0 0 0 0 0.22632 1 23548 23548 0 0 1 53481 12155 35482 35503 52339 52339 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.484130859375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 119.52 1 119.52 119.02 120.02 0 0 0 0 0.23698 1 23551 23551 0 0 1 53482 12155 35482 35503 52340 52340 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4839477539062 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 123.97 1 123.97 123.47 124.47 0 0 0 0 0.22632 1 24439 24439 0 0 1 53483 12155 35482 35503 52341 52341 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4839477539062 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 123.99 1 123.99 123.49 124.49 0 0 0 0 0.23698 1 24442 24442 0 0 1 53484 12155 35482 35503 52342 52342 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4826049804688 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 131.98 1 131.98 131.48 132.48 0 0 0 0 0.22632 1 26088 26088 0 0 1 53485 12155 35482 35503 52343 52343 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4852905273438 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 142.67 1 142.67 142.17 143.17 0 0 0 0 0.22632 1 28452 28452 0 0 1 53486 12155 35482 35503 52344 52344 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4852905273438 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 142.69 1 142.69 142.19 143.19 0 0 0 0 0.23698 1 28455 28455 0 0 1 53487 12155 35482 35503 52345 52345 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4825439453125 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 145.39 1 145.39 144.89 145.89 0 0 0 0 0.22632 1 29055 29055 0 0 1 53488 12155 35482 35503 52346 52346 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4774169921875 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 150.21 1 150.21 149.71 150.71 0 0 0 0 0.22632 1 30074 30074 0 0 1 53489 12155 35482 35503 52347 52347 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4833984375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 160.4 1 160.4 159.9 160.9 0 0 0 0 0.22632 1 32211 32211 0.094841 0.094841 1 53490 12155 35482 35503 52348 52348 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4833984375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 160.41 1 160.41 159.91 160.91 0 0 0 0 0.23698 1 32213 32213 0 0 1 53491 12155 35482 35503 52349 52349 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.485595703125 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 175.19 1 175.19 174.69 175.69 0 0 0 0 0.22632 1 36296 36296 0 0 1 53492 12155 35482 35503 52350 52350 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.485595703125 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 175.2 1 175.2 174.7 175.7 0 0 0 0 0.23698 1 36298 36298 0 0 1 53493 12155 35482 35503 52351 52351 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.482666015625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 23.495 1 21.942 21.442 22.442 -1.5532 0 0 0 0.23698 1 4055 4055 0 0 1 53494 12155 35482 35503 52352 52352 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4832763671875 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 23.762 1 22.209 21.709 22.709 -1.5532 0 0 0 0.22632 1 4114 4114 0 0 1 53495 12155 35482 35503 52353 52353 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4832763671875 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 23.769 1 22.216 21.716 22.716 -1.5532 0 0 0 0.23698 1 4115 4115 0 0 1 53496 12155 35482 35503 52354 52354 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4827270507812 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 72.568 1 69.258 68.758 69.758 -3.3107 0 0 0 0.22632 1 14143 14143 0 0 1 53497 12155 35482 35503 52355 52355 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4827270507812 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 72.584 1 69.273 68.773 69.773 -3.3107 0 0 0 0.23698 1 14145 14145 0 0 1 53498 12155 35482 35503 52356 52356 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4830932617188 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 76.196 1 72.781 72.281 73.281 -3.4151 0 0 0 0.22632 1 14873 14873 0 0 1 53499 12155 35482 35503 52357 52357 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4835815429688 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 82.088 1 78.531 78.031 79.031 -3.557 0 0 0 0.22632 1 16043 16043 0.094841 0.094841 1 53500 12155 35482 35503 52358 52358 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4888916015625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 98.256 1 94.123 93.623 94.623 -4.1326 0 0 0 0.23698 1 19292 19292 0.30703 0.30703 1 53501 12155 35482 35503 52359 52359 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4850463867188 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 109.25 1 104.87 104.37 105.37 -4.3776 0 0 0 0.22632 1 21532 21532 0 0 1 53502 12155 35482 35503 52360 52360 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4850463867188 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 109.27 1 104.89 104.39 105.39 -4.3776 0 0 0 0.23698 1 21536 21536 0 0 1 53503 12155 35482 35503 52361 52361 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.484619140625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 110.04 1 105.67 105.17 106.17 -4.3776 0 0 0 0.22632 1 21688 21688 0 0 1 53504 12155 35482 35503 52362 52362 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4837646484375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 121.33 1 116.78 116.28 117.28 -4.5476 0 0 0 0.22632 1 23916 23916 0 0 1 53505 12155 35482 35503 52363 52363 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4877319335938 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 122.52 1 117.97 117.47 118.47 -4.5476 0 0 0 0.22632 1 24154 24154 0.094841 0.094841 1 53506 12155 35482 35503 52364 52364 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4829711914062 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 123.05 1 118.47 117.97 118.97 -4.5757 0 0 0 0.22632 1 24259 24259 0.094841 0.094841 1 53507 12155 35482 35503 52365 52365 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4853515625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 130.73 1 126.09 125.59 126.59 -4.6359 0 0 0 0.22632 1 25763 25763 0 0 1 53508 12155 35482 35503 52366 52366 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4841918945312 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 153.94 1 149.17 148.67 149.67 -4.7684 0 0 0 0.22632 1 30593 30593 0 0 1 53509 12155 35482 35503 52367 52367 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4841918945312 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 153.96 1 149.19 148.69 149.69 -4.7684 0 0 0 0.23698 1 30596 30596 0 0 1 53510 12155 35482 35503 52368 52368 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4837646484375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 169.98 1 165.19 164.69 165.69 -4.7898 0 0 0 0.22632 1 34472 34472 0 0 1 53511 12155 35482 35503 52369 52369 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4900512695312 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 175.04 1 170.25 169.75 170.75 -4.7898 0 0 0 0.23698 1 35781 35781 0.30703 0.30703 1 53512 12155 35482 35503 52370 52370 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4850463867188 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 179.09 1 174.3 173.8 174.8 -4.7898 0 0 0 0.22632 1 36645 36645 0 0 1 53513 12155 35482 35503 52371 52371 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 839.4850463867188 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 179.1 1 174.31 173.81 174.81 -4.7898 0 0 0 0.23698 1 36646 36646 0 0 1 53514 12155 35482 35503 52372 52372 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4856567382812 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 70.444 1 66.864 66.364 67.364 -3.5798 0 0 0 0.22632 1 13279 13279 0 0 1 53515 12155 35482 35503 52373 52373 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4849853515625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 74.143 1 70.467 69.967 70.967 -3.6764 0 0 0 0.22632 1 14023 14023 0 0 1 53516 12155 35482 35503 52374 52374 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4842529296875 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 89.547 1 85.503 85.003 86.003 -4.0443 0 0 0 0.22632 1 17064 17064 0 0 1 53517 12155 35482 35503 52375 52375 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4842529296875 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 89.571 1 85.526 85.026 86.026 -4.0443 0 0 0 0.23698 1 17068 17068 0 0 1 53518 12155 35482 35503 52376 52376 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4856567382812 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 111.97 1 107.47 106.97 107.97 -4.5061 0 0 0 0.22632 1 21493 21493 0 0 1 53519 12155 35482 35503 52377 52377 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4832153320312 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 113.08 1 108.56 108.06 109.06 -4.5259 0 0 0 0.22632 1 21708 21708 0 0 1 53520 12155 35482 35503 52378 52378 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4835815429688 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 118.68 1 114.07 113.57 114.57 -4.6106 0 0 0 0.22632 1 22773 22773 0 0 1 53521 12155 35482 35503 52379 52379 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4841918945312 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 120.05 1 115.4 114.9 115.9 -4.645 0 0 0 0.22632 1 23039 23039 0 0 1 53522 12155 35482 35503 52380 52380 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.484375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 132.7 1 127.85 127.35 128.35 -4.8527 0 0 0 0.23698 1 25492 25492 0.30703 0.30703 1 53523 12155 35482 35503 52381 52381 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4850463867188 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 137.53 1 132.61 132.11 133.11 -4.9216 0 0 0 0.22632 1 26439 26439 0 0 1 53524 12155 35482 35503 52382 52382 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.482421875 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 152.62 1 147.35 146.85 147.85 -5.2669 0 0 0 0.22632 1 29592 29592 0 0 1 53525 12155 35482 35503 52383 52383 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.483642578125 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 154.94 1 149.66 149.16 150.16 -5.2854 0 0 0 0.22632 1 30051 30051 0 0 1 53526 12155 35482 35503 52384 52384 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4845581054688 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 155.28 1 149.99 149.49 150.49 -5.2854 0 0 0 0.22632 1 30118 30118 0 0 1 53527 12155 35482 35503 52385 52385 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4845581054688 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 155.29 1 150.01 149.51 150.51 -5.2854 0 0 0 0.23698 1 30121 30121 0 0 1 53528 12155 35482 35503 52386 52386 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4839477539062 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 163.77 1 158.73 158.23 159.23 -5.0446 0 0 0 0.23698 1 31890 31890 0 0 1 53529 12155 35482 35503 52387 52387 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4837036132812 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 61.785 1 58.546 58.046 59.046 -3.2395 0 0 0 0.22632 1 11572 11572 0 0 1 53530 12155 35482 35503 52388 52388 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4828491210938 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 74.916 1 71.322 70.822 71.822 -3.594 0 0 0 0.22632 1 14236 14236 0 0 1 53531 12155 35482 35503 52389 52389 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4828491210938 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 74.925 1 71.331 70.831 71.831 -3.594 0 0 0 0.23698 1 14237 14237 0 0 1 53532 12155 35482 35503 52390 52390 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4849853515625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 78.877 1 75.201 74.701 75.701 -3.676 0 0 0 0.22632 1 15025 15025 0 0 1 53533 12155 35482 35503 52391 52391 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.484130859375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 98.077 1 94.121 93.621 94.621 -3.9564 0 0 0 0.22632 1 18824 18824 0 0 1 53534 12155 35482 35503 52392 52392 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.484130859375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 98.095 1 94.139 93.639 94.639 -3.9564 0 0 0 0.23698 1 18827 18827 0 0 1 53535 12155 35482 35503 52393 52393 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.48583984375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 100.57 1 96.583 96.083 97.083 -3.9895 0 0 0 0.22632 1 19322 19322 0.094841 0.094841 1 53536 12155 35482 35503 52394 52394 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4856567382812 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 106.83 1 102.73 102.23 103.23 -4.1032 0 0 0 0.22632 1 20542 20542 0 0 1 53537 12155 35482 35503 52395 52395 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4830322265625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 110.87 1 106.64 106.14 107.14 -4.2289 0 0 0 0.22632 1 21336 21336 0 0 1 53538 12155 35482 35503 52396 52396 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4834594726562 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 111.8 1 107.57 107.07 108.07 -4.2289 0 0 0 0.22632 1 21521 21521 0 0 1 53539 12155 35482 35503 52397 52397 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4891357421875 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 120.02 1 115.56 115.06 116.06 -4.467 0 0 0 0.23698 1 23105 23105 0.30703 0.30703 1 53540 12155 35482 35503 52398 52398 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.482666015625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 126.77 1 122.07 121.57 122.57 -4.6998 0 0 0 0.22632 1 24387 24387 0 0 1 53541 12155 35482 35503 52399 52399 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4845581054688 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 136.72 1 131.89 131.39 132.39 -4.8307 0 0 0 0.22632 1 26334 26334 0 0 1 53542 12155 35482 35503 52400 52400 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4845581054688 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 136.75 1 131.92 131.42 132.42 -4.8307 0 0 0 0.23698 1 26338 26338 0 0 1 53543 12155 35482 35503 52401 52401 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.484130859375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 147.46 1 142.4 141.9 142.9 -5.0595 0 0 0 0.22632 1 28548 28548 0 0 1 53544 12155 35482 35503 52402 52402 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.484130859375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 147.48 1 142.42 141.92 142.92 -5.0595 0 0 0 0.23698 1 28551 28551 0 0 1 53545 12155 35482 35503 52403 52403 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4833984375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 155.32 1 150.07 149.57 150.57 -5.2526 0 0 0 0.22632 1 30118 30118 0 0 1 53546 12155 35482 35503 52404 52404 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4841918945312 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 156.66 1 151.39 150.89 151.89 -5.2712 0 0 0 0.22632 1 30387 30387 0.094841 0.094841 1 53547 12155 35482 35503 52405 52405 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4841918945312 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 156.68 1 151.41 150.91 151.91 -5.2712 0 0 0 0.23698 1 30389 30389 0 0 1 53548 12155 35482 35503 52406 52406 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4827880859375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 160.54 1 155.29 154.79 155.79 -5.2526 0 0 0 0.22632 1 31156 31156 0 0 1 53549 12155 35482 35503 52407 52407 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4840698242188 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 161.68 1 156.49 155.99 156.99 -5.1878 0 0 0 0.22632 1 31380 31380 0 0 1 53550 12155 35482 35503 52408 52408 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4840698242188 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 161.7 1 156.51 156.01 157.01 -5.1878 0 0 0 0.23698 1 31383 31383 0 0 1 53551 12155 35482 35503 52409 52409 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4822387695312 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 171.67 1 166.79 166.29 167.29 -4.873 0 0 0 0.22632 1 34031 34031 0.094841 0.087559 1 53552 12155 35482 35503 52410 52410 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4859619140625 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 174.23 1 169.34 168.84 169.84 -4.8916 0 0 0 0.22632 1 34677 34677 0.094841 0.087559 1 53553 12155 35482 35503 52411 52411 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4837646484375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 175.82 1 170.92 170.42 171.42 -4.9008 0 0 0 0.22632 1 35046 35046 0 0 1 53554 12155 35482 35503 52412 52412 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4837646484375 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 175.83 1 170.93 170.43 171.43 -4.9008 0 0 0 0.23698 1 35047 35047 0 0 1 53555 12155 35482 35503 52413 52413 0.14594299804684852 WHRRWRRRRRG 11 Unmodified _WHRRWRRRRRG_ 0 0 0 MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MNX1|p.R19Tfs*37|1|0.22|ENSG00000130675|chr7:157010297-157010298|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4822387695312 2 839.485948 1676.95734 NaN NaN NaN NaN NaN NaN NaN 177.01 1 172.11 171.61 172.61 -4.9008 0 0 0 0.23698 1 35296 35296 0 0 1 53556 12155 35482 35503 52414 52414 0.14594299804684852 WHVAIGHVY 9 Unmodified _WHVAIGHVY_ 0 0 0 REV__ENST00000459805.5_1_1:155184905-155186549:-|nuORF REV__ENST00000459805.5_1_1:155184905-155186549:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2793579101562 2 541.282526 1080.5505 NaN NaN NaN NaN NaN NaN NaN 63.7 1 60.443 59.943 60.943 -3.2567 0 0 0 0.1902 1 11953 11953 7.4771 2.7611 1 + 53557 18567 35483 35504 52415 52415 0.013445997455619363 WIFRRVLYRPY 11 Unmodified _WIFRRVLYRPY_ 0 0 0 ENSG00000070985|ENST00000696290|TRPM5;nc|ENSG00000070985|Q9NZQ8-2|TRPM5 ENSG00000070985|ENST00000696290|TRPM5 ENSG00000070985|ENST00000696290|TRPM5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6767578125 3 523.633139 1567.87759 NaN NaN NaN NaN NaN NaN NaN 150.02 1 150.02 149.52 150.52 0 0 0 0 0.23698 1 30032 30032 1.3296 0.87513 1 53558 1443 35484 35505 52416 52416 0.11636375567513824 WIFWKTWIFWK 11 Unmodified _WIFWKTWIFWK_ 0 0 0 nc|ENSG00000288642|P51861|CDR1 nc|ENSG00000288642|P51861|CDR1 nc|ENSG00000288642|P51861|CDR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7817993164062 3 547.630735 1639.87038 NaN NaN NaN NaN NaN NaN NaN 108.35 1 108.35 107.85 108.85 0 0 0 0 0.22632 1 21308 21308 0.0072825 0.0067181 1 53559 12654 35485 35506 52417 52417 0.0760364296706939 WIFWKTWIFWK 11 Unmodified _WIFWKTWIFWK_ 0 0 0 nc|ENSG00000288642|P51861|CDR1 nc|ENSG00000288642|P51861|CDR1 nc|ENSG00000288642|P51861|CDR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7683715820312 3 547.630735 1639.87038 NaN NaN NaN NaN NaN NaN NaN 152.55 1 152.55 152.05 153.05 0 0 0 0 0.23698 1 30557 30557 0 0 1 53560 12654 35485 35506 52418 52418 0.0760364296706939 WIFWKTWIFWK 11 Unmodified _WIFWKTWIFWK_ 0 0 0 nc|ENSG00000288642|P51861|CDR1 nc|ENSG00000288642|P51861|CDR1 nc|ENSG00000288642|P51861|CDR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.78369140625 3 547.630735 1639.87038 0.33467 0.00018327 4.4095 0.0024148 4.7441 0.002598 547.9679224099218 151.95 0.10712 151.95 151.87 151.97 0 4 2 2 0 0 0 0.89124 1 30429 30429 0.026206 0.026206 1 888100 53561 12654 35485 35506 52419 52419 0.0760364296706939 WIGKERYDDLF 11 Unmodified _WIGKERYDDLF_ 0 0 0 REV__tr|U7SSU0|U7SSU0_FUSNUPyruvate,phosphatedikinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01376PE=3SV=1 REV__tr|U7SSU0|U7SSU0_FUSNUPyruvate,phosphatedikinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01376PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2436828613281 3 481.241865 1440.70376 NaN NaN NaN NaN NaN NaN NaN 77.611 1 73.952 73.452 74.452 -3.6588 0 0 0 0.22632 1 14779 14779 3.0723 1.6171 1 + 53562 25070 35486 35507 52420 52420 0.0010412528069991822 WIIKLPRR 8 Unmodified _WIIKLPRR_ 0 0 0 ENSG00000104901|ENST00000221498|DKKL1 ENSG00000104901|ENST00000221498|DKKL1 ENSG00000104901|ENST00000221498|DKKL1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2666625976562 2 541.353286 1080.69202 NaN NaN NaN NaN NaN NaN NaN 37.526 1 37.526 37.026 38.026 0 0 0 0 0.2396 1 6940 6940 0.12286 0 1 53563 2266 35487 35508 52421 52421 0.15490017838692438 WIIKLPRR 8 Unmodified _WIIKLPRR_ 0 0 0 ENSG00000104901|ENST00000221498|DKKL1 ENSG00000104901|ENST00000221498|DKKL1 ENSG00000104901|ENST00000221498|DKKL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2689819335938 2 541.353286 1080.69202 NaN NaN NaN NaN NaN NaN NaN 164.08 1 159.04 158.54 159.54 -5.0446 0 0 0 0.2396 1 31969 31969 0.0082765 0 1 53564 2266 35487 35508 52422 52422 0.15490017838692438 WIKLVIVVPL 10 Unmodified _WIKLVIVVPL_ 0 0 0 REV__tr|U7ST67|U7ST67_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01308PE=4SV=1 REV__tr|U7ST67|U7ST67_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01308PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.258056640625 2 590.396828 1178.7791 NaN NaN NaN NaN NaN NaN NaN 41.424 1 38.773 38.273 39.273 -2.651 0 0 0 2.8426 1 7442 7442 0 0 1 + 53565 25084 35488 35509 52423 52423 0.19686379269751342 WILLKFQTMDV 11 Unmodified _WILLKFQTMDV_ 0 0 0 ENST00000265849.11_1_7:6043629-6043671:-|nuORF ENST00000265849.11_1_7:6043629-6043671:-|nuORF ENST00000265849.11_1_7:6043629-6043671:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.24334716796875 3 465.256458 1392.74754 NaN NaN NaN NaN NaN NaN NaN 156.17 1 156.17 155.67 156.67 0 0 0 0 0.22632 1 31324 31324 0.026206 0 1 53566 8367 35489 35510 52424 52424 0.06688018453473887 WILLLLVLV 9 Unmodified _WILLLLVLV_ 0 0 0 ENSG00000198398|ENST00000354905|TMEM207 ENSG00000198398|ENST00000354905|TMEM207 ENSG00000198398|ENST00000354905|TMEM207 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2772216796875 2 541.372821 1080.73109 NaN NaN NaN NaN NaN NaN NaN 14.898 1 13.725 13.225 14.225 -1.173 0 0 0 0.19635 1 2050 2050 0 0 1 53567 7450 35490 35511 52425 52425 0.19395305349689806 WILLLSTL 8 Unmodified _WILLLSTL_ 0 0 0 GABRA1|p.P402Tfs*9|1|0.29|ENSG00000022355|chr5:161897251-161897261|CAAGCCCGAAA/-|frameshift_variant;ENSG00000022355|ENST00000393943|GABRA1 GABRA1|p.P402Tfs*9|1|0.29|ENSG00000022355|chr5:161897251-161897261|CAAGCCCGAAA/-|frameshift_variant GABRA1|p.P402Tfs*9|1|0.29|ENSG00000022355|chr5:161897251-161897261|CAAGCCCGAAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 320.2047119140625 3 320.203911 957.589904 NaN NaN NaN NaN NaN NaN NaN 92.312 1 88.387 87.887 88.887 -3.9251 0 0 0 0.21486 1 18077 18077 1.6526 0 1 53568 1127 35491 35512 52426 52426 0.10941306976428677 WINVKPGY 8 Unmodified _WINVKPGY_ 0 0 0 REV__PAK2|p.D425N|1|0.11|ENSG00000180370|chr3:196820490-196820490|G/A|missense_variant REV__PAK2|p.D425N|1|0.11|ENSG00000180370|chr3:196820490-196820490|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 326.17987060546875 3 326.179877 975.517802 NaN NaN NaN NaN NaN NaN NaN 139.97 1 135.12 134.62 135.62 -4.8492 0 0 0 0.21486 1 26990 26990 1.8442 0 1 + 53569 24427 35492 35513 52427 52427 0.029063926227081538 WIRDEEPV 8 Unmodified _WIRDEEPV_ 0 0 0 REV__nc|ENSG00000165555|Q6NXP6-2|NOXRED1 REV__nc|ENSG00000165555|Q6NXP6-2|NOXRED1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.27587890625 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 106.16 1 106.16 105.66 106.66 0 0 0 0 0.10184 1 20867 20867 44.407 2.3125 1 + 53570 17781 35493 35514 52428 52428 -0.011194204534831442 WIRDEEPV 8 Unmodified _WIRDEEPV_ 0 0 0 REV__nc|ENSG00000165555|Q6NXP6-2|NOXRED1 REV__nc|ENSG00000165555|Q6NXP6-2|NOXRED1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2615966796875 2 522.261456 1042.50836 -0.89984 -0.00046995 1.1099 0.00057965 0.21004 0.0001097 522.2618365449091 110.23 0.691 105.74 105.41 106.11 -4.4915 34 19 2 0 0 0 0.14825 1 21159 21159 53.576 2.7205 1 2388100 + 53571 17781 35493 35514 52429 52429 -0.011194204534831442 WIRDEEPV 8 Unmodified _WIRDEEPV_ 0 0 0 REV__nc|ENSG00000165555|Q6NXP6-2|NOXRED1 REV__nc|ENSG00000165555|Q6NXP6-2|NOXRED1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2794189453125 2 522.261456 1042.50836 0.6927 0.00036177 -0.57241 -0.00029895 0.1203 6.2826E-05 522.261121425028 109.9 0.73291 105.71 105.47 106.2 -4.1826 31 20 2 0 0 0 0.14825 1 21232 21232 53.576 1.3072 1 2338700 + 53572 17781 35493 35514 52430 52430 -0.011194204534831442 WISRRRRWNLW 11 Unmodified _WISRRRRWNLW_ 0 0 0 REV__ENST00000472726.2_1_14:104124030-104124072:+|nuORF REV__ENST00000472726.2_1_14:104124030-104124072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7911376953125 3 543.639287 1627.89603 NaN NaN NaN NaN NaN NaN NaN 38.566 1 38.566 38.066 39.066 0 0 0 0 0.22632 1 7152 7152 0.026206 0.026206 1 + 53573 22059 35494 35515 52431 52431 0.1071993026207565 WISRRRRWNLW 11 Unmodified _WISRRRRWNLW_ 0 0 0 REV__ENST00000472726.2_1_14:104124030-104124072:+|nuORF REV__ENST00000472726.2_1_14:104124030-104124072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7837524414062 3 543.639287 1627.89603 NaN NaN NaN NaN NaN NaN NaN 127.6 0.99999 122.98 122.48 123.48 -4.6172 0 0 0 0.22632 1 25162 25162 0.00056442 0 1 + 53574 22059 35494 35515 52432 52432 0.1071993026207565 WISRRRRWNLW 11 Unmodified _WISRRRRWNLW_ 0 0 0 REV__ENST00000472726.2_1_14:104124030-104124072:+|nuORF REV__ENST00000472726.2_1_14:104124030-104124072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.779541015625 3 543.639287 1627.89603 NaN NaN NaN NaN NaN NaN NaN 88.047 1 84.052 83.552 84.552 -3.9953 0 0 0 0.22632 1 16769 16769 0.026206 0.018923 1 + 53575 22059 35494 35515 52433 52433 0.1071993026207565 WISRRRRWNLW 11 Unmodified _WISRRRRWNLW_ 0 0 0 REV__ENST00000472726.2_1_14:104124030-104124072:+|nuORF REV__ENST00000472726.2_1_14:104124030-104124072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7844848632812 3 543.639287 1627.89603 NaN NaN NaN NaN NaN NaN NaN 164.67 1 159.6 159.1 160.1 -5.0648 0 0 0 0.22632 1 32127 32127 0.026206 0 1 + 53576 22059 35494 35515 52434 52434 0.1071993026207565 WIVLLREQGF 10 Unmodified _WIVLLREQGF_ 0 0 0 REV__tr|U7T5M7|U7T5M7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00018PE=3SV=1 REV__tr|U7T5M7|U7T5M7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00018PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.776123046875 2 630.858598 1259.70264 NaN NaN NaN NaN NaN NaN NaN 43.821 1 41.055 40.555 41.555 -2.7661 0 0 0 0.22588 1 7919 7919 3.5965 0.31518 1 + 53577 25417 35495 35516 52435 52435 0.08317955702455038 WIWVFYFFILM 11 Unmodified _WIWVFYFFILM_ 0 0 0 SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant SLC37A3|p.M455I|1|0.12|ENSG00000157800|chr7:140337311-140337311|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2765502929688 3 522.27356 1563.79885 NaN NaN NaN NaN NaN NaN NaN 108.4 1 108.4 107.9 108.9 0 0 0 0 0.22632 1 21318 21318 0.03141 0 1 53578 25683 35496 35517 52436 52436 0.03950387218174001 WKAKLKRNPGG 11 Unmodified _WKAKLKRNPGG_ 0 0 0 VPS9D1|p.D265Gfs*127|1|0.45|ENSG00000075399|chr16:89711366-89711367|-/C|frameshift_variant VPS9D1|p.D265Gfs*127|1|0.45|ENSG00000075399|chr16:89711366-89711367|-/C|frameshift_variant VPS9D1|p.D265Gfs*127|1|0.45|ENSG00000075399|chr16:89711366-89711367|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 627.873291015625 2 627.875114 1253.73567 NaN NaN NaN NaN NaN NaN NaN 170.39 1 165.48 164.98 165.98 -4.9149 0 0 0 0.22632 1 33690 33690 0.172 0.14579 1 53579 26572 35497 35518 52437 52437 0.11895582545162142 WKALPLKLI 9 Unmodified _WKALPLKLI_ 0 0 0 nc|ENSG00000101639|Q8TEP8-1|CEP192;CEP192|p.R2464Kfs*5|1|0.13|ENSG00000101639|chr18:13116476-13116477|-/AAATCCA|frameshift_variant;ENSG00000101639|ENST00000506447|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;nc|ENSG00000101639|Q8TEP8-2|CEP192;CEP192|p.N1674Kfs*6|1|0.25|ENSG00000101639|chr18:13069142-13069143|-/A|frameshift_variant;CEP192|p.K1891Nfs*8|1|0.19|ENSG00000101639|chr18:13087068-13087068|A/-|frameshift_variant nc|ENSG00000101639|Q8TEP8-1|CEP192 nc|ENSG00000101639|Q8TEP8-1|CEP192 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27783203125 2 541.360245 1080.70594 NaN NaN NaN NaN NaN NaN NaN 165.2 1 160.41 159.91 160.91 -4.7898 0 0 0 0.23508 1 33068 33068 0.52476 0 1 53580 491 35498 35519 52438 52438 0.1688125054711236 WKCGLCSF 8 Unmodified _WKCGLCSF_ 0 0 0 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.14385986328125 3 315.14367 942.40918 NaN NaN NaN NaN NaN NaN NaN 92.481 1 92.481 91.981 92.981 0 0 0 0 0.21486 1 18083 18083 0.40072 0 1 53581 5664 35499 35520 52439 52439 -0.06432857943582349 WKCGLCSF 8 Unmodified _WKCGLCSF_ 0 0 0 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1487731933594 3 315.14367 942.40918 NaN NaN NaN NaN NaN NaN NaN 94.493 1 94.493 93.993 94.993 0 0 0 0 0.21486 1 18506 18506 0.40072 0 1 53582 5664 35499 35520 52440 52440 -0.06432857943582349 WKCGLCSF 8 Unmodified _WKCGLCSF_ 0 0 0 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.15887451171875 3 315.14367 942.40918 NaN NaN NaN NaN NaN NaN NaN 94.676 1 94.676 94.176 95.176 0 0 0 0 0.21486 1 18542 18542 0.40072 0 1 53583 5664 35499 35520 52441 52441 -0.06432857943582349 WKCGLCSF 8 Unmodified _WKCGLCSF_ 0 0 0 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.138427734375 3 315.14367 942.40918 NaN NaN NaN NaN NaN NaN NaN 90.006 1 86.228 85.728 86.728 -3.7779 0 0 0 0.21486 1 17223 17223 0.40072 0 1 53584 5664 35499 35520 52442 52442 -0.06432857943582349 WKERRTWLERY 11 Unmodified _WKERRTWLERY_ 0 0 0 tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1 tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1 tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2849731445312 3 541.623191 1621.84774 0.40493 0.00021932 4.2081 0.0022792 4.613 0.0024985 541.9605960418163 109.49 0.17594 109.49 109.4 109.57 0 5 4 2 0 0 0 0.96205 1 21511 21511 2.2527 2.1579 1 1120500 53585 25878 35500 35521 52443 52443 0.061693918315086194 WKEWAKRNHTL 11 Unmodified _WKEWAKRNHTL_ 0 0 0 ENSG00000188163|ENST00000344774|FAM166A ENSG00000188163|ENST00000344774|FAM166A ENSG00000188163|ENST00000344774|FAM166A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25726318359375 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 81.867 1 78.179 77.679 78.679 -3.6879 0 0 0 0.22632 1 15601 15601 0.026206 0 1 53586 7156 35501 35522 52444 52444 0.0583404873998461 WKFRNRRMKKN 11 Unmodified _WKFRNRRMKKN_ 0 0 0 REV__nc|ENSG00000275410|P35680-3|HNF1B REV__nc|ENSG00000275410|P35680-3|HNF1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2813110351562 3 521.964894 1562.87285 0.20667 0.00010788 -2.0616 -0.0010761 -1.855 -0.00096823 522.2984025423734 141.25 0.44164 141.25 141.06 141.5 0 13 12 2 0 0 0 0.80759 1 28170 28170 2.6312 1.5215 1 4634100 + 53587 19934 35502 35523 52445 52445 0.11393168153063016 WKFRWRETVFD 11 Unmodified _WKFRWRETVFD_ 0 0 0 ENST00000487919.5_1_2:36785633-36788595:-|nuORF ENST00000487919.5_1_2:36785633-36788595:-|nuORF ENST00000487919.5_1_2:36785633-36788595:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4034423828125 2 785.401692 1568.78883 NaN NaN NaN NaN NaN NaN NaN 58.63 1 58.63 58.13 59.13 0 0 0 0 0.23698 1 11224 11224 1.1933 0.84271 1 53588 10480 35503 35524 52446 52446 0.02718915537138855 WKIFLHRKRWK 11 Unmodified _WKIFLHRKRWK_ 0 0 0 PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2742309570312 3 533.324528 1596.95176 NaN NaN NaN NaN NaN NaN NaN 147.58 1 142.42 141.92 142.92 -5.1557 0 0 0 0.22632 1 28561 28561 0.50596 0.50596 1 53589 12790 35504 35525 52447 52447 0.17715763449655242 WKINNWNEFWK 11 Unmodified _WKINNWNEFWK_ 0 0 0 nc|ENSG00000185480|Q9NWS1-6|PARPBP nc|ENSG00000185480|Q9NWS1-6|PARPBP nc|ENSG00000185480|Q9NWS1-6|PARPBP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.26220703125 3 522.261371 1563.76228 NaN NaN NaN NaN NaN NaN NaN 78.068 1 74.409 73.909 74.909 -3.6588 0 0 0 0.22632 1 14870 14870 1.4551 0.94916 1 53590 12512 35505 35526 52448 52448 0.0029522664581236313 WKKMLKKV 8 Unmodified _WKKMLKKV_ 0 0 0 REV__nc|ENSG00000240891|Q0VAA5-2|PLCXD2 REV__nc|ENSG00000240891|Q0VAA5-2|PLCXD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 354.2271728515625 3 354.228174 1059.66269 NaN NaN NaN NaN NaN NaN NaN 6.7832 1 6.7832 6.2832 7.2832 0 0 0 0 0.21486 1 551 551 0 0 1 + 53591 24287 35506 35527 52449 52449 0.13524737498187278 WKKQNRYLWNE 11 Unmodified _WKKQNRYLWNE_ 0 0 0 REV__ENSG00000149054|ENST00000278319|ZNF215 REV__ENSG00000149054|ENST00000278319|ZNF215 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2709350585938 3 522.272158 1563.79465 NaN NaN NaN NaN NaN NaN NaN 100.31 1 96.152 95.652 96.652 -4.1594 0 0 0 0.22632 1 19713 19713 0.026206 0 1 + 53592 16996 35507 35528 52450 52450 0.035300140488743637 WKKQYQRRTHF 11 Unmodified _WKKQYQRRTHF_ 0 0 0 REV__ENST00000421964.1_1_2:208733645-208734633:-|nuORF REV__ENST00000421964.1_1_2:208733645-208734633:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 395.2264404296875 4 395.216655 1576.83751 -0.832 -0.00032882 -0.40689 -0.00016081 -1.2389 -0.00048963 395.46730941885426 24.545 0.34126 22.692 22.539 22.881 -1.8534 21 9 3 0 0 0 0.66298 1 4023 4023 0 0 1 1109000 + 53593 21515 35508 35529 52451 52451 0.07216828896889638 WKKRAAFKKF 10 Unmodified _WKKRAAFKKF_ 0 0 0 REV__ENSG00000196730|ENST00000408954|DAPK1 REV__ENSG00000196730|ENST00000408954|DAPK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2286682128906 3 437.267909 1308.7819 -0.58299 -0.00025492 0.47873 0.00020933 -0.10426 -4.559E-05 437.26801420774797 109.4 0.98039 105.02 104.33 105.31 -4.3776 38 27 2 0 0 0 0.52989 1 21593 21593 0.043787 0.042406 1 1260600 + 53594 19276 35509 35530 52452 52452 0.13985647447248084 WKKRAAFKKF 10 Unmodified _WKKRAAFKKF_ 0 0 0 REV__ENSG00000196730|ENST00000408954|DAPK1 REV__ENSG00000196730|ENST00000408954|DAPK1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 437.267909 1308.7819 -0.58299 -0.00025492 0.47873 0.00020933 -0.10426 -4.559E-05 437.26801420774797 109.4 0.98039 105.02 104.33 105.31 -4.3776 0.092847 0.0002018 NaN 0.043787 38 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1260600 + 53595 19276 35509 35530 0.13985647447248084 WKKSVDSI 8 Unmodified _WKKSVDSI_ 0 0 0 nc|ENSG00000183454|Q12879-2|GRIN2A;GRIN2A|p.S1341Afs*56|4|0.26|ENSG00000183454|chr16:9763523-9763523|T/-|frameshift_variant;ENSG00000183454|ENST00000330684|GRIN2A nc|ENSG00000183454|Q12879-2|GRIN2A nc|ENSG00000183454|Q12879-2|GRIN2A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7691650390625 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 137.67 1 137.67 137.17 138.17 0 0 0 0 0.21486 1 27310 27310 10.824 0 1 53596 6847 35510 35531 52453 52453 0.04098071414523474 WKKVLPLL 8 Unmodified _WKKVLPLL_ 0 0 0 ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.A864Lfs*3|1|0.3|ENSG00000153201|chr2:108758533-108758533|G/-|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1 ENSG00000153201|ENST00000283195|RANBP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 498.459716796875 2 498.833863 995.653173 NaN NaN NaN NaN NaN NaN NaN 10.17 1 10.17 9.6704 10.67 0 0 0 0 0.21486 1 1251 1251 0 0 1 53597 4961;4959;1113;6979 35511 35532 52454 52454 0.15517292484332756 WKKWKNLFVRY 11 Unmodified _WKKWKNLFVRY_ 0 0 0 ENST00000357103.4_1_12:1863654-1887044:+|nuORF ENST00000357103.4_1_12:1863654-1887044:+|nuORF ENST00000357103.4_1_12:1863654-1887044:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6775512695312 3 523.301389 1566.88234 -0.3963 -0.00020739 2.0186 0.0010563 1.6222 0.00084893 523.636964396927 94.073 0.42093 89.93 89.752 90.173 -4.1435 18 11 2 0 0 0 0.82392 1 17917 17917 0.45452 0.37117 1 3060800 53598 8977 35512 35533 52455 52455 0.12157259710238577 WKLKHKKL 8 Unmodified _WKLKHKKL_ 0 0 0 nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128;CEP128|p.I749Ffs*9|1|0.42|ENSG00000100629|chr14:80778013-80778013|T/-|frameshift_variant nc|ENSG00000100629|Q6ZU80-1|CEP128 nc|ENSG00000100629|Q6ZU80-1|CEP128 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.9064636230469 3 360.9062 1079.69677 NaN NaN NaN NaN NaN NaN NaN 9.3181 1 9.3181 8.8181 9.8181 0 0 0 0 0.21486 1 1065 1065 0 0 1 53599 1999 35513 35534 52456 52456 0.16010901981462666 WKLLKGVVR 9 Unmodified _WKLLKGVVR_ 0 0 0 REV__ENST00000361735.3_1_1:171750911-171751103:+|nuORF REV__ENST00000361735.3_1_1:171750911-171751103:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.9190673828125 3 366.909721 1097.70733 NaN NaN NaN NaN NaN NaN NaN 9.4554 1 8.6612 8.1612 9.1612 -0.79424 0 0 0 0.23508 1 1093 1093 0 0 1 + 53600 20890 35514 35535 52457 52457 0.16238884635890827 WKLSKILKV 9 Unmodified _WKLSKILKV_ 0 0 0 REV__ENST00000287218.8_1_6:38120424-38120514:+|nuORF REV__ENST00000287218.8_1_6:38120424-38120514:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 372.1105041503906 3 372.249743 1113.7274 -0.75068 -0.00027944 0.83592 0.00031117 0.085245 3.1733E-05 372.2499960983609 83.64 0.87153 79.942 79.521 80.392 -3.6985 56 24 3 0 0 0 0.8799 1 15954 15954 2.4985 0 1 5299700 + 53601 20338 35515 35536 52458 52458 0.17508635575859444 WKMKWEQMWRL 11 Unmodified _WKMKWEQMWRL_ 0 0 0 LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2721557617188 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 129.47 1 124.84 124.34 125.34 -4.6292 0 0 0 0.22632 1 25516 25516 0.026206 0 1 53602 12069 35516 35537 52459 52459 0.020173768270979053 WKMKWEQMWRL 11 Unmodified _WKMKWEQMWRL_ 0 0 0 LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2769165039062 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 104.23 1 99.886 99.386 100.39 -4.346 0 0 0 0.22632 1 19968 19968 0.094841 0.087559 1 53603 12069 35516 35537 52460 52460 0.020173768270979053 WKMKWEQMWRL 11 Unmodified _WKMKWEQMWRL_ 0 0 0 LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2738647460938 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 111.55 1 107.06 106.56 107.56 -4.4915 0 0 0 0.22632 1 21409 21409 0.094841 0 1 53604 12069 35516 35537 52461 52461 0.020173768270979053 WKMKWEQMWRL 11 Unmodified _WKMKWEQMWRL_ 0 0 0 LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant LARGE|p.R308W|1|0.12|ENSG00000133424|chr22:33384275-33384275|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2757568359375 3 541.275858 1620.80574 NaN NaN NaN NaN NaN NaN NaN 147.78 1 142.72 142.22 143.22 -5.0595 0 0 0 0.22632 1 28615 28615 0.026206 0 1 53605 12069 35516 35537 52462 52462 0.020173768270979053 WKPDETAP 8 Unmodified _WKPDETAP_ 0 0 0 ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 315.1796569824219 3 315.155509 942.444697 NaN NaN NaN NaN NaN NaN NaN 106.38 1 106.38 105.88 106.88 0 0 0 0 0.21486 1 20912 20912 1.6526 0.32309 1 53606 5247 35517 35538 52463 52463 -0.028827808905703023 WKPDETAP 8 Unmodified _WKPDETAP_ 0 0 0 ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.1438903808594 3 315.155509 942.444697 NaN NaN NaN NaN NaN NaN NaN 124.17 1 119.58 119.08 120.08 -4.5926 0 0 0 0.21486 1 23896 23896 1.6526 0.32309 1 53607 5247 35517 35538 52464 52464 -0.028827808905703023 WKPGQRVA 8 Unmodified _WKPGQRVA_ 0 0 0 sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2;sp|F5HDM3|UL23_HCMVMTegumentproteinUL23OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL23PE=3SV=1 sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2 sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.8338928222656 3 314.515371 940.524284 -0.69641 -0.00021903 0.55233 0.00017372 -0.14407 -4.5313E-05 314.5154878497648 26.168 0.65594 24.245 23.987 24.643 -1.9222 50 18 4 0 0 0 8448 1 4356 4356 0.12286 0 1 4425300 53608 25730 35518 35539 52465 52465 0.05164330574075393 WKQEDISAT 9 Unmodified _WKQEDISAT_ 0 0 0 ENSG00000185313|ENST00000449082|SCN10A ENSG00000185313|ENST00000449082|SCN10A ENSG00000185313|ENST00000449082|SCN10A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2107849121094 3 359.845223 1076.51384 0.1436 5.1675E-05 -0.63387 -0.00022809 -0.49026 -0.00017642 359.8450180415095 21.085 1.1346 19.611 19.314 20.448 -1.4742 88 31 5 0 0 0 0.6427 1 3595 3595 10.151 4.7479 1 86981000 53609 6981 35519 35540 52466 52466 -0.021357416616638147 WKQLRGRWRRK 11 Unmodified _WKQLRGRWRRK_ 0 0 0 ENST00000525546.5_1_1:26759017-26759095:+|nuORF;ENST00000525326.5_1_1:26759017-26759412:+|nuORF ENST00000525546.5_1_1:26759017-26759095:+|nuORF ENST00000525546.5_1_1:26759017-26759095:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4029541015625 2 785.471109 1568.92767 NaN NaN NaN NaN NaN NaN NaN 173.24 1 173.24 172.74 173.74 0 0 0 0 0.22632 1 35813 35813 0.094841 0.094841 1 53610 10892 35520 35541 52467 52467 0.16595923016006964 WKQMSWFYYQY 11 Unmodified _WKQMSWFYYQY_ 0 0 0 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7911376953125 3 543.91135 1628.71222 NaN NaN NaN NaN NaN NaN NaN 83.183 1 83.183 82.683 83.683 0 0 0 0 0.22632 1 16218 16218 0.026206 0 1 53611 5623 35521 35542 52468 52468 -0.076986440742985 WKQMSWFYYQY 11 Unmodified _WKQMSWFYYQY_ 0 0 0 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3634033203125 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 93.633 1 93.633 93.133 94.133 0 0 0 0 0.22632 1 18325 18325 0 0 1 53612 5623 35521 35542 52469 52469 -0.076986440742985 WKQMSWFYYQY 11 Unmodified _WKQMSWFYYQY_ 0 0 0 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3614501953125 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 129.13 1 124.5 124 125 -4.6292 0 0 0 0.22632 1 25454 25454 0.094841 0.094841 1 53613 5623 35521 35542 52470 52470 -0.076986440742985 WKQMSWFYYQY 11 Unmodified _WKQMSWFYYQY_ 0 0 0 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3634033203125 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 177.34 1 172.55 172.05 173.05 -4.7898 0 0 0 0.22632 1 36272 36272 0 0 1 53614 5623 35521 35542 52471 52471 -0.076986440742985 WKQMSWFYYQY 11 Unmodified _WKQMSWFYYQY_ 0 0 0 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3634033203125 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 177.36 1 172.57 172.07 173.07 -4.7898 0 0 0 0.23698 1 36274 36274 0 0 1 53615 5623 35521 35542 52472 52472 -0.076986440742985 WKQMSWFYYQY 11 Unmodified _WKQMSWFYYQY_ 0 0 0 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.363525390625 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 114.3 1 109.74 109.24 110.24 -4.555 0 0 0 0.22632 1 21946 21946 0 0 1 53616 5623 35521 35542 52473 52473 -0.076986440742985 WKQMSWFYYQY 11 Unmodified _WKQMSWFYYQY_ 0 0 0 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3677978515625 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 177.83 1 172.92 172.42 173.42 -4.9088 0 0 0 0.23698 1 35466 35466 0 0 1 53617 5623 35521 35542 52474 52474 -0.076986440742985 WKRLFHKRVTP 11 Unmodified _WKRLFHKRVTP_ 0 0 0 REV__POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant REV__POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2577209472656 3 489.961367 1466.86227 NaN NaN NaN NaN NaN NaN NaN 121.67 1 117.14 116.64 117.64 -4.5305 0 0 0 0.22632 1 23425 23425 0.026206 0.025642 1 + 53618 18538 35522 35543 52475 52475 0.1475150877026863 WKRTRRERERR 11 Unmodified _WKRTRRERERR_ 0 0 0 REV__ENSG00000139218|ENST00000369367|SCAF11 REV__ENSG00000139218|ENST00000369367|SCAF11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7832641601562 3 543.648734 1627.92437 NaN NaN NaN NaN NaN NaN NaN 117.36 1 117.36 116.86 117.86 0 0 0 0 0.22632 1 23118 23118 0 0 1 + 53619 16509 35523 35544 52476 52476 0.13552628171305514 WKRTRRERERR 11 Unmodified _WKRTRRERERR_ 0 0 0 REV__ENSG00000139218|ENST00000369367|SCAF11 REV__ENSG00000139218|ENST00000369367|SCAF11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7754516601562 3 543.648734 1627.92437 0.32477 0.00017656 -0.53472 -0.0002907 -0.20995 -0.00011414 543.981521087187 117.07 0.2115 117.07 116.99 117.2 0 8 5 3 0 0 0 0.89092 1 23076 23076 0.172 0.060958 1 2105700 + 53620 16509 35523 35544 52477 52477 0.13552628171305514 WKRTRRERERR 11 Unmodified _WKRTRRERERR_ 0 0 0 REV__ENSG00000139218|ENST00000369367|SCAF11 REV__ENSG00000139218|ENST00000369367|SCAF11 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7801513671875 3 543.648734 1627.92437 0.33901 0.0001843 -1.5785 -0.00085817 -1.2395 -0.00067387 543.9829612336075 146.61 0.13486 146.61 146.54 146.67 0 5 3 2 0 0 0 0.89114 1 29311 29311 0.026206 0 1 1915600 + 53621 16509 35523 35544 52478 52478 0.13552628171305514 WKRWKCHRNQE 11 Unmodified _WKRWKCHRNQE_ 0 0 0 ENST00000604297.1_1_X:46421090-46422044:-|nuORF ENST00000604297.1_1_X:46421090-46422044:-|nuORF ENST00000604297.1_1_X:46421090-46422044:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4077758789062 2 785.894043 1569.77353 NaN NaN NaN NaN NaN NaN NaN 126.14 1 121.54 121.04 122.04 -4.5984 0 0 0 0.23429 1 24867 24867 4.897 3.4151 1 53622 11728 35524 35545 52479 52479 0.011437254683414722 WKRYHIKVH 9 Unmodified _WKRYHIKVH_ 0 0 0 ENSG00000223573|ENST00000646160|TINCR ENSG00000223573|ENST00000646160|TINCR ENSG00000223573|ENST00000646160|TINCR MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 633.9236450195312 2 633.864549 1265.71454 NaN NaN NaN NaN NaN NaN NaN 174.55 1 169.66 169.16 170.16 -4.8845 0 0 0 0.1963 1 34679 34679 0.073264 0.029476 1 53623 7776 35525 35546 52480 52480 0.09231617236287093 WKSGKPLK 8 Unmodified _WKSGKPLK_ 0 0 0 REV__CEP95|p.Q357Rfs*7|1|0.07|ENSG00000258890|chr17:64526113-64526113|C/-|frameshift_variant REV__CEP95|p.Q357Rfs*7|1|0.07|ENSG00000258890|chr17:64526113-64526113|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 315.195068359375 3 315.195639 942.565087 NaN NaN NaN NaN NaN NaN NaN 116.1 1 111.74 111.24 112.24 -4.3585 0 0 0 0.21486 1 22352 22352 1.6526 0 1 + 53624 13383 35526 35547 52481 52481 0.09150671893689832 WKTFFFLYHWF 11 Unmodified _WKTFFFLYHWF_ 0 0 0 L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2737426757812 3 541.271207 1620.79179 NaN NaN NaN NaN NaN NaN NaN 137.79 1 137.79 137.29 138.29 0 0 0 0 0.22632 1 27338 27338 0.094841 0.094277 1 53625 12037 35527 35548 52482 52482 0.006227906619642454 WKTFFFLYHWF 11 Unmodified _WKTFFFLYHWF_ 0 0 0 L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2722778320312 3 541.271207 1620.79179 NaN NaN NaN NaN NaN NaN NaN 53.022 1 50.138 49.638 50.638 -2.8837 0 0 0 0.22632 1 10098 10098 0.50596 0.41111 1 53626 12037 35527 35548 52483 52483 0.006227906619642454 WKTFFFLYHWF 11 Unmodified _WKTFFFLYHWF_ 0 0 0 L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.27783203125 3 541.271207 1620.79179 NaN NaN NaN NaN NaN NaN NaN 138.48 1 133.83 133.33 134.33 -4.6413 0 0 0 0.22632 1 27342 27342 0.026206 0 1 53627 12037 35527 35548 52484 52484 0.006227906619642454 WKTFFFLYHWF 11 Unmodified _WKTFFFLYHWF_ 0 0 0 L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.273193359375 3 541.271207 1620.79179 NaN NaN NaN NaN NaN NaN NaN 136.1 1 131.21 130.71 131.71 -4.8951 0 0 0 0.22632 1 26152 26152 0.172 0 1 53628 12037 35527 35548 52485 52485 0.006227906619642454 WKTFFFLYHWF 11 Unmodified _WKTFFFLYHWF_ 0 0 0 L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.271728515625 3 541.271207 1620.79179 NaN NaN NaN NaN NaN NaN NaN 178.42 1 173.55 173.05 174.05 -4.8686 0 0 0 0.22632 1 35523 35523 0 0 1 53629 12037 35527 35548 52486 52486 0.006227906619642454 WKTFFFLYHWF 11 Unmodified _WKTFFFLYHWF_ 0 0 0 L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2705078125 3 541.271207 1620.79179 NaN NaN NaN NaN NaN NaN NaN 30.565 1 28.491 27.991 28.991 -2.0743 0 0 0 0.22632 1 5239 5239 0.50596 0.41111 1 53630 12037 35527 35548 52487 52487 0.006227906619642454 WKTFFFLYHWF 11 Unmodified _WKTFFFLYHWF_ 0 0 0 L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|62|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2706298828125 3 541.271207 1620.79179 NaN NaN NaN NaN NaN NaN NaN 147.54 1 142.48 141.98 142.98 -5.0595 0 0 0 0.22632 1 28564 28564 0.11104 0 1 53631 12037 35527 35548 52488 52488 0.006227906619642454 WKTLLLAP 8 Unmodified _WKTLLLAP_ 0 0 0 nc|ENSG00000167311|Q96L15-2|ART5 nc|ENSG00000167311|Q96L15-2|ART5 nc|ENSG00000167311|Q96L15-2|ART5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 314.5328063964844 3 314.532139 940.574589 NaN NaN NaN NaN NaN NaN NaN 27.179 1 25.256 24.756 25.756 -1.9222 0 0 0 0.21486 1 4531 4531 0.45834 0 1 53632 12444 35528 35549 52489 52489 0.10192440179230289 WKTVRMYPFQI 11 Unmodified _WKTVRMYPFQI_ 0 0 0 ENSG00000101290|ENST00000460006|CDS2;ENST00000379070.3_1_20:5157275-5170877:+|nuORF ENSG00000101290|ENST00000460006|CDS2 ENSG00000101290|ENST00000460006|CDS2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26580810546875 3 490.263835 1467.76968 NaN NaN NaN NaN NaN NaN NaN 53.057 1 53.057 52.557 53.557 0 0 0 0 0.22632 1 10096 10096 3.0723 3.0663 1 53633 2054 35529 35550 52490 52490 0.05450242921892823 WKVWQRRRRLH 11 Unmodified _WKVWQRRRRLH_ 0 0 0 ENST00000509200.5_1_17:47574227-47574383:+|nuORF ENST00000509200.5_1_17:47574227-47574383:+|nuORF ENST00000509200.5_1_17:47574227-47574383:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3572387695312 2 810.976559 1619.93856 NaN NaN NaN NaN NaN NaN NaN 22.752 1 21.199 20.699 21.699 -1.5532 0 0 0 0.23698 1 3901 3901 0 0 1 53634 10727 35530 35551 52491 52491 0.15339325390277736 WKWIKIFKFMG 11 Unmodified _WKWIKIFKFMG_ 0 0 0 REV__tr|U7SNE4|U7SNE4_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01814PE=4SV=1 REV__tr|U7SNE4|U7SNE4_FUSNUDUF2262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01814PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3949584960938 2 742.417768 1482.82098 NaN NaN NaN NaN NaN NaN NaN 173.49 1 168.7 168.2 169.2 -4.7898 0 0 0 0.22632 1 35396 35396 0.00056442 0 1 + 53635 24978 35531 35552 52492 52492 0.0988861168659696 WKWQLFRNFYI 11 Unmodified _WKWQLFRNFYI_ 0 0 0 REV__nc|ENSG00000198055|P43250-2|GRK6 REV__nc|ENSG00000198055|P43250-2|GRK6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 534.2852783203125 3 534.285628 1599.83505 NaN NaN NaN NaN NaN NaN NaN 168.88 1 164.01 163.51 164.51 -4.873 0 0 0 0.22632 1 33330 33330 0.172 0.060958 1 + 53636 24233 35532 35553 52493 52493 0.05912980439279636 WLALMVVH 8 Unmodified _WLALMVVH_ 0 0 0 GPR20|p.A58V|2|0.29|ENSG00000204882|chr8:141357751-141357751|G/A|missense_variant GPR20|p.A58V|2|0.29|ENSG00000204882|chr8:141357751-141357751|G/A|missense_variant GPR20|p.A58V|2|0.29|ENSG00000204882|chr8:141357751-141357751|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.51641845703125 3 323.517724 967.531344 NaN NaN NaN NaN NaN NaN NaN 33.317 1 33.317 32.817 33.817 0 0 0 0 0.23837 1 6078 6078 0.12286 0 1 53637 11860 35533 35554 52494 52494 0.046279271302978486 WLAMAHLS 8 Unmodified _WLAMAHLS_ 0 0 0 nc|ENSG00000163820|Q9BQS8-3|FYCO1 nc|ENSG00000163820|Q9BQS8-3|FYCO1 nc|ENSG00000163820|Q9BQS8-3|FYCO1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.161829 927.463658 NaN NaN NaN NaN NaN NaN NaN 105.83 1 105.83 105.33 106.33 0 0 0 0 0.2386 1 20800 20800 0.12286 0 1 53638 12420 35534 35555 52495 52495 -0.0029752280050843183 WLCEMQWPRRW 11 Unmodified _WLCEMQWPRRW_ 0 0 0 REV__AP5B1|p.P836Rfs*65|2|0.24|ENSG00000254470|chr11:65777986-65777986|G/-|frameshift_variant REV__AP5B1|p.P836Rfs*65|2|0.24|ENSG00000254470|chr11:65777986-65777986|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 530.800048828125 3 530.920074 1589.73839 NaN NaN NaN NaN NaN NaN NaN 162.01 1 162.01 161.51 162.51 0 0 0 0 0.22632 1 32549 32549 0 0 1 + 53639 13077 35535 35556 52496 52496 -0.03288653383856399 WLCEQQHRRW 10 Unmodified _WLCEQQHRRW_ 0 0 0 MTHFD1L|p.R339C|1|0.21|ENSG00000120254|chr6:150922235-150922235|C/T|missense_variant MTHFD1L|p.R339C|1|0.21|ENSG00000120254|chr6:150922235-150922235|C/T|missense_variant MTHFD1L|p.R339C|1|0.21|ENSG00000120254|chr6:150922235-150922235|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2359313964844 3 481.23505 1440.68332 NaN NaN NaN NaN NaN NaN NaN 159.65 1 154.85 154.35 155.35 -4.7952 0 0 0 2.8426 1 31743 31743 0.043787 0 1 53640 12168 35536 35557 52497 52497 -0.019393238600969198 WLCEQQHRRWR 11 Unmodified _WLCEQQHRRWR_ 0 0 0 MTHFD1L|p.R339C|1|0.21|ENSG00000120254|chr6:150922235-150922235|C/T|missense_variant MTHFD1L|p.R339C|1|0.21|ENSG00000120254|chr6:150922235-150922235|C/T|missense_variant MTHFD1L|p.R339C|1|0.21|ENSG00000120254|chr6:150922235-150922235|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.268798828125 3 533.268754 1596.78443 NaN NaN NaN NaN NaN NaN NaN 86.525 1 86.525 86.025 87.025 0 0 0 0 0.22632 1 16888 16888 1.4551 0 1 53641 12168 35537 35558 52498 52498 0.009911278425988712 WLCKTCIEAH 10 Unmodified _WLCKTCIEAH_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant;TRIM33|p.Q382Tfs*20|1|0.12|ENSG00000197323|chr1:114430809-114430810|-/T|frameshift_variant nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2890625 2 602.286094 1202.55763 NaN NaN NaN NaN NaN NaN NaN 57.991 1 55.081 54.581 55.581 -2.9105 0 0 0 2.8426 1 11133 11133 6.6304 1.2277 1 53642 7354 35538 35559 52499 52499 -0.03554171760538338 WLDLEVKY 8 Unmodified _WLDLEVKY_ 0 0 0 REV__nc|ENSG00000228970|P0CB48|UBTFL6 REV__nc|ENSG00000228970|P0CB48|UBTFL6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2840576171875 2 533.2844 1064.55425 NaN NaN NaN NaN NaN NaN NaN 84.488 1 80.776 80.276 81.276 -3.7117 0 0 0 0.21486 1 16138 16138 10.183 0.80027 1 + 53643 24280 35539 35560 52500 52500 0.024552247287601858 WLDSVVTQV 9 Unmodified _WLDSVVTQV_ 0 0 0 ENSG00000087903|ENST00000303657|RFX2;nc|ENSG00000087903|P48378-2|RFX2 ENSG00000087903|ENST00000303657|RFX2 ENSG00000087903|ENST00000303657|RFX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6975708007812 2 523.779482 1045.54441 0.18866 9.8817E-05 -0.061104 -3.2005E-05 0.12756 6.6812E-05 523.77936544279 150.04 0.66119 150.04 149.66 150.32 0 33 18 2 0 0 0 0.042631 2 30016 30016;30071 74.423 32.328 1 4588000 53644 1721 35540 35561 52501;52502 52501 0.023460367233838042 WLDSVVTQV 9 Unmodified _WLDSVVTQV_ 0 0 0 ENSG00000087903|ENST00000303657|RFX2;nc|ENSG00000087903|P48378-2|RFX2 ENSG00000087903|ENST00000303657|RFX2 ENSG00000087903|ENST00000303657|RFX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6846923828125 2 523.779482 1045.54441 -0.03418 -1.7903E-05 0.33533 0.00017564 0.30115 0.00015773 523.7795329284313 154.98 0.95227 150.2 149.64 150.59 -4.7791 61 26 3 0 0 0 0.42289 1 30748 30748 32.305 0 1 7775400 53645 1721 35540 35561 52503 52503 0.023460367233838042 WLDSVVTQV 9 Unmodified _WLDSVVTQV_ 0 0 0 ENSG00000087903|ENST00000303657|RFX2;nc|ENSG00000087903|P48378-2|RFX2 ENSG00000087903|ENST00000303657|RFX2 ENSG00000087903|ENST00000303657|RFX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6873779296875 2 523.779482 1045.54441 -0.37564 -0.00019675 0.56378 0.00029529 0.18813 9.854E-05 523.7796611263319 155.63 0.93687 150.34 149.82 150.76 -5.2854 56 25 3 0 0 0 0.071377 1 30222 30222 64.236 15.89 1 5579700 53646 1721 35540 35561 52504 52504 0.023460367233838042 WLDSVVTQV 9 Unmodified _WLDSVVTQV_ 0 0 0 ENSG00000087903|ENST00000303657|RFX2;nc|ENSG00000087903|P48378-2|RFX2 ENSG00000087903|ENST00000303657|RFX2 ENSG00000087903|ENST00000303657|RFX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6781005859375 2 523.779482 1045.54441 0.45225 0.00023688 0.027305 1.4302E-05 0.47956 0.00025118 523.7793321326935 155.51 0.84877 150.26 149.87 150.71 -5.2526 52 23 3 0 0 0 0.13708 1 30205 30205 46.021 19.137 1 5066100 53647 1721 35540 35561 52505 52505 0.023460367233838042 WLEQLMQYFRR 11 Unmodified _WLEQLMQYFRR_ 0 0 0 REV__ENST00000423894.5_1_3:28283112-28361002:+|nuORF REV__ENST00000423894.5_1_3:28283112-28361002:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4064331054688 2 785.403378 1568.7922 NaN NaN NaN NaN NaN NaN NaN 55.198 1 55.198 54.698 55.698 0 0 0 0 0.23698 1 10532 10532 1.3295 0.13619 1 + 53648 21539 35541 35562 52506 52506 0.030558423195088835 WLEQLMQYFRR 11 Unmodified _WLEQLMQYFRR_ 0 0 0 REV__ENST00000423894.5_1_3:28283112-28361002:+|nuORF REV__ENST00000423894.5_1_3:28283112-28361002:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4005126953125 2 785.403378 1568.7922 NaN NaN NaN NaN NaN NaN NaN 146.79 1 142.1 141.6 142.6 -4.6868 0 0 0 0.23698 1 29115 29115 2.2828 0.95324 1 + 53649 21539 35541 35562 52507 52507 0.030558423195088835 WLEQREQAKQQ 11 Unmodified _WLEQREQAKQQ_ 0 0 0 REV__nc|ENSG00000068971|Q15173-2|PPP2R5B REV__nc|ENSG00000068971|Q15173-2|PPP2R5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7767028808594 3 481.916152 1442.72663 NaN NaN NaN NaN NaN NaN NaN 130.8 1 126.17 125.67 126.67 -4.6359 0 0 0 0.22632 1 25778 25778 1.4551 0 1 + 53650 14235 35542 35563 52508 52508 0.02297144398198725 WLFKHRRV 8 Unmodified _WLFKHRRV_ 0 0 0 nc|ENSG00000065923|Q96T83|SLC9A7;ENSG00000065923|ENST00000616978|SLC9A7;SLC9A7|p.N185Qfs*62|1|0.35|ENSG00000065923|chrX:46679729-46679730|-/A|frameshift_variant;SLC9A7|p.F255Lfs*11|1|0.37|ENSG00000065923|chrX:46669635-46669635|A/-|frameshift_variant nc|ENSG00000065923|Q96T83|SLC9A7 nc|ENSG00000065923|Q96T83|SLC9A7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2084045410156 3 381.229565 1140.66687 NaN NaN NaN NaN NaN NaN NaN 36.049 1 33.655 33.155 34.155 -2.3938 0 0 0 0.2386 1 6652 6652 0.063987 0 1 53651 1363 35543 35564 52509 52509 0.10215963036102949 WLFLQLCKV 9 Unmodified _WLFLQLCKV_ 0 0 0 ENST00000501173.6_1_5:127302595-127398182:-|nuORF ENST00000501173.6_1_5:127302595-127398182:-|nuORF ENST00000501173.6_1_5:127302595-127398182:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 383.8975830078125 3 383.887817 1148.64162 NaN NaN NaN NaN NaN NaN NaN 80.652 1 80.652 80.152 81.152 0 0 0 0 0.19687 1 15705 15705 8.1555 7.7473 1 53652 10620 35544 35565 52510 52510 0.07324727398668074 WLHIALSRKW 10 Unmodified _WLHIALSRKW_ 0 0 0 REV__nc|ENSG00000110713|P52948-6|NUP98 REV__nc|ENSG00000110713|P52948-6|NUP98 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.227783203125 3 437.25578 1308.74551 NaN NaN NaN NaN NaN NaN NaN 94.269 1 90.279 89.779 90.779 -3.9907 0 0 0 2.8426 1 18470 18470 1.9064 0.45126 1 + 53653 15212 35545 35566 52511 52511 0.10348770550535846 WLHRLFRAN 9 Unmodified _WLHRLFRAN_ 0 0 0 REV__UBE3C|p.F500Lfs*4|1|0.37|ENSG00000009335|chr7:157207477-157207478|TT/-|frameshift_variant REV__UBE3C|p.F500Lfs*4|1|0.37|ENSG00000009335|chr7:157207477-157207478|TT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 404.967041015625 3 404.896475 1211.66759 NaN NaN NaN NaN NaN NaN NaN 10.851 1 9.9471 9.4471 10.447 -0.90401 0 0 0 0.23508 1 1393 1393 0 0 1 + 53654 13908 35546 35567 52512 52512 0.07022757685194847 WLILWLRS 8 Unmodified _WLILWLRS_ 0 0 0 ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant ADH1B|p.A318Lfs*29|1|0.06|ENSG00000196616|chr4:99311533-99311533|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7763061523438 2 543.826569 1085.63859 0.33572 0.00018257 -2.5455 -0.0013843 -2.2097 -0.0012017 543.824122781597 136.99 0.16919 136.99 136.86 137.03 0 5 4 2 0 0 0 0.72428 1 27136 27136 10.824 1.4408 1 2788700 53655 83 35547 35568 52513 52513 0.09919220336178114 WLISPADNQ 9 Unmodified _WLISPADNQ_ 0 0 0 nc|ENSG00000154639|P78310-7|CXADR;ENSG00000154639|ENST00000284878|CXADR;CXADR|p.N201Mfs*27|1|0.28|ENSG00000154639|chr21:17560727-17560727|A/-|frameshift_variant;nc|ENSG00000154639|P78310-5|CXADR;nc|ENSG00000154639|P78310-2|CXADR;nc|ENSG00000154639|P78310-6|CXADR;nc|ENSG00000154639|P78310-3|CXADR;nc|ENSG00000154639|P78310-4|CXADR nc|ENSG00000154639|P78310-7|CXADR nc|ENSG00000154639|P78310-7|CXADR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2791748046875 2 522.261456 1042.50836 -0.89984 -0.00046995 1.1099 0.00057965 0.21004 0.0001097 522.2618365449091 110.23 0.691 105.74 105.41 106.11 -4.4915 34 19 2 0 0 0 0.09143 1 21132 21132 58.679 5.1032 1 2388100 53656 5018 35548 35569 52514 52514 -0.011194204534831442 WLKAQEGPD 9 Unmodified _WLKAQEGPD_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2813110351562 2 522.261456 1042.50836 0.6927 0.00036177 -0.57241 -0.00029895 0.1203 6.2826E-05 522.261121425028 109.9 0.73291 105.71 105.47 106.2 -4.1826 31 20 2 0 0 0 0.10297 2 21156 21156;21171 54.774 1.198 1 2338700 53657 4411 35549 35570 52515;52516 52515 -0.011194204534604069 WLKDRCYC 8 Unmodified _WLKDRCYC_ 0 0 0 REV__ENST00000477648.1_1_9:103064475-103066198:-|nuORF REV__ENST00000477648.1_1_9:103064475-103066198:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7769775390625 2 543.746605 1085.47866 NaN NaN NaN NaN NaN NaN NaN 81.067 1 77.379 76.879 77.879 -3.6879 0 0 0 0.2343 1 15448 15448 0.0082765 0 1 + 53658 22122 35550 35571 52517 52517 -0.06066398994835254 WLKLGLLHCNC 11 Unmodified _WLKLGLLHCNC_ 0 0 0 REV__nc|ENSG00000144771|Q9HBL6-2|LRTM1 REV__nc|ENSG00000144771|Q9HBL6-2|LRTM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.8949279785156 3 433.894866 1298.66277 NaN NaN NaN NaN NaN NaN NaN 4.3234 1 3.6972 3.1972 4.1972 -0.62626 0 0 0 0.23698 1 63 63 0 0 1 + 53659 16802 35551 35572 52518 52518 0.025383694359334186 WLKLHRFF 8 Unmodified _WLKLHRFF_ 0 0 0 REV__ENST00000396076.5_1_12:21797030-21799877:-|nuORF REV__ENST00000396076.5_1_12:21797030-21799877:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 573.8145141601562 2 573.832186 1145.64982 NaN NaN NaN NaN NaN NaN NaN 117.21 1 117.21 116.71 117.71 0 0 0 0 0.23664 1 23086 23086 3.2813 3.2754 1 + 53660 21276 35552 35573 52519 52519 0.082820424303236 WLKLVVHVD 9 Unmodified _WLKLVVHVD_ 0 0 0 REV__nc|ENSG00000088833|Q9UNZ2-6|NSFL1C REV__nc|ENSG00000088833|Q9UNZ2-6|NSFL1C MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 370.2973937988281 3 370.221965 1107.64407 NaN NaN NaN NaN NaN NaN NaN 123.81 1 123.81 123.31 124.31 0 0 0 0 0.23508 1 24408 24408 0.26902 0 1 + 53661 14515 35553 35574 52520 52520 0.09454899128013494 WLKRLRKAKKR 11 Unmodified _WLKRLRKAKKR_ 0 0 0 REV__BRD1|p.K432Rfs*26|1|0.18|ENSG00000100425|chr22:49823023-49823023|T/-|frameshift_variant REV__BRD1|p.K432Rfs*26|1|0.18|ENSG00000100425|chr22:49823023-49823023|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3887329101562 2 741.996429 1481.9783 NaN NaN NaN NaN NaN NaN NaN 151.78 1 151.78 151.28 152.28 0 0 0 0 0.22632 1 30402 30402 0.026206 0.025642 1 + 53662 13204 35554 35575 52521 52521 0.2565945234098308 WLKRLRKAKKR 11 Unmodified _WLKRLRKAKKR_ 0 0 0 REV__BRD1|p.K432Rfs*26|1|0.18|ENSG00000100425|chr22:49823023-49823023|T/-|frameshift_variant REV__BRD1|p.K432Rfs*26|1|0.18|ENSG00000100425|chr22:49823023-49823023|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.37890625 2 741.996429 1481.9783 NaN NaN NaN NaN NaN NaN NaN 154.17 1 154.17 153.67 154.67 0 0 0 0 0.22632 1 30898 30898 0 0 1 + 53663 13204 35554 35575 52522 52522 0.2565945234098308 WLKRWARRFIH 11 Unmodified _WLKRWARRFIH_ 0 0 0 REV__JRK|p.V377I|1|0.07|ENSG00000234616|chr8:142664930-142664930|C/T|missense_variant REV__JRK|p.V377I|1|0.07|ENSG00000234616|chr8:142664930-142664930|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6812133789062 3 523.640628 1567.90005 NaN NaN NaN NaN NaN NaN NaN 152.92 1 152.92 152.42 153.42 0 0 0 0 0.23698 1 30636 30636 0.45452 0.046251 1 + 53664 23693 35555 35576 52523 52523 0.13882019755783404 WLLKERKRLKI 11 Unmodified _WLLKERKRLKI_ 0 0 0 REV__RAPGEF6|p.N386Ifs*20|1|0.21|ENSG00000158987|chr5:131504723-131504723|T/-|frameshift_variant REV__RAPGEF6|p.N386Ifs*20|1|0.21|ENSG00000158987|chr5:131504723-131504723|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.388427734375 2 741.985195 1481.95584 NaN NaN NaN NaN NaN NaN NaN 140.51 1 140.51 140.01 141.01 0 0 0 0 0.23698 1 27978 27978 1.0715 0.76443 1 + 53665 24547 35556 35577 52524 52524 0.234138081527135 WLLLLKFLT 9 Unmodified _WLLLLKFLT_ 0 0 0 REV__ENST00000482193.1_1_3:49449826-49450370:+|nuORF REV__ENST00000482193.1_1_3:49449826-49450370:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 573.86865234375 2 573.867903 1145.72125 NaN NaN NaN NaN NaN NaN NaN 11.564 1 10.497 9.9973 10.997 -1.0664 0 0 0 0.23508 1 1323 1323 0 0 1 + 53666 16816 35557 35578 52525 52525 0.15422117344314756 WLLRQLFVQ 9 Unmodified _WLLRQLFVQ_ 0 0 0 REV__ABCD1|p.R69Q|1|0.45|ENSG00000101986|chrX:153725472-153725472|G/A|missense_variant REV__ABCD1|p.R69Q|1|0.45|ENSG00000101986|chrX:153725472-153725472|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3001708984375 2 601.855858 1201.69716 NaN NaN NaN NaN NaN NaN NaN 12.341 1 11.211 10.711 11.711 -1.1293 0 0 0 0.23508 1 1505 1505 0.52476 0 1 + 53667 12904 35558 35579 52526 52526 0.10438276910645072 WLMAWNMQRRL 11 Unmodified _WLMAWNMQRRL_ 0 0 0 sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1;sp|F5HE44|US12_HCMVMUncharacterizedproteinUS12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US12PE=3SV=1 sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1 sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 502.2629699707031 3 502.260319 1503.75913 NaN NaN NaN NaN NaN NaN NaN 110.81 1 106.32 105.82 106.82 -4.4915 0 0 0 0.22632 1 21272 21272 0.65807 0 1 53668 25733 35559 35580 52527 52527 0.027399369958175157 WLMRRRRRKQR 11 Unmodified _WLMRRRRRKQR_ 0 0 0 ENSG00000167543|ENST00000301057|TP53I13;ENST00000579674.1_1_17:27898877-27899117:+|nuORF ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7935791015625 3 547.998821 1640.97463 NaN NaN NaN NaN NaN NaN NaN 101.33 1 101.33 100.83 101.83 0 0 0 0 0.23698 1 19887 19887 0.094841 0.011491 1 53669 5816 35560 35581 52528 52528 0.17978459295500215 WLNLYHFWRET 11 Unmodified _WLNLYHFWRET_ 0 0 0 ENSG00000140459|ENST00000268053|CYP11A1 ENSG00000140459|ENST00000268053|CYP11A1 ENSG00000140459|ENST00000268053|CYP11A1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2619018554688 3 522.261371 1563.76228 NaN NaN NaN NaN NaN NaN NaN 105.55 1 105.55 105.05 106.05 0 0 0 0 0.22632 1 20745 20745 0.0059557 0 1 53670 4302 35561 35582 52529 52529 0.0029522664581236313 WLNWDMTK 8 Unmodified _WLNWDMTK_ 0 0 0 nc|ENSG00000164393|Q8IZF7|ADGRF2P;nc|ENSG00000164393|Q8IZF7-2|ADGRF2P nc|ENSG00000164393|Q8IZF7|ADGRF2P nc|ENSG00000164393|Q8IZF7|ADGRF2P MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7761840820312 2 547.260402 1092.50625 0.38956 0.00021319 -0.67034 -0.00036685 -0.28078 -0.00015366 547.2600702145381 32.239 0.53355 30.008 29.691 30.224 -2.2305 32 14 3 0 0 0 0.71273 1 5819 5819 12.532 0.89125 1 900520 53671 12423 35562 35583 52530 52530 -0.03630172462931114 WLNWDMTK 8 Unmodified _WLNWDMTK_ 0 0 0 nc|ENSG00000164393|Q8IZF7|ADGRF2P;nc|ENSG00000164393|Q8IZF7-2|ADGRF2P nc|ENSG00000164393|Q8IZF7|ADGRF2P nc|ENSG00000164393|Q8IZF7|ADGRF2P MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.260402 1092.50625 0.29509 0.00016149 -0.70472 -0.00038566 -0.40963 -0.00022417 547.2600100040928 32.086 0.45325 30.059 29.798 30.251 -2.0264 0.0311 -6.8844E-05 NaN 12.532 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1558800 53672 12423 35562 35583 -0.03630172462931114 WLNWDMTK 8 Unmodified _WLNWDMTK_ 0 0 0 nc|ENSG00000164393|Q8IZF7|ADGRF2P;nc|ENSG00000164393|Q8IZF7-2|ADGRF2P nc|ENSG00000164393|Q8IZF7|ADGRF2P nc|ENSG00000164393|Q8IZF7|ADGRF2P MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 547.260402 1092.50625 0.53972 0.00029537 -0.50103 -0.00027419 0.038692 2.1175E-05 547.2602124856902 32.165 0.41154 30.017 29.795 30.207 -2.1483 -0.011398 0.0001541 NaN 12.532 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 961390 53673 12423 35562 35583 -0.03630172462931114 WLNWRRRRSIW 11 Unmodified _WLNWRRRRSIW_ 0 0 0 ENST00000472726.2_1_14:104124030-104124072:+|nuORF ENST00000472726.2_1_14:104124030-104124072:+|nuORF ENST00000472726.2_1_14:104124030-104124072:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7740478515625 3 543.639287 1627.89603 NaN NaN NaN NaN NaN NaN NaN 151.15 1 145.91 145.41 146.41 -5.2365 0 0 0 0.23698 1 29294 29294 0.40827 0 1 53674 10229 35563 35584 52531 52531 0.10719930262052912 WLPHHGRKA 9 Unmodified _WLPHHGRKA_ 0 0 0 ENST00000371959.7_1_X:112022880-112024247:-|nuORF ENST00000371959.7_1_X:112022880-112024247:-|nuORF ENST00000371959.7_1_X:112022880-112024247:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 367.86199951171875 3 367.87367 1100.59918 NaN NaN NaN NaN NaN NaN NaN 9.442 1 8.4074 7.9074 8.9074 -1.0347 0 0 0 0.23508 1 963 963 0 0 1 53675 9169 35564 35585 52532 52532 0.05290513105342143 WLPHLPHA 8 Unmodified _WLPHLPHA_ 0 0 0 ENST00000301634.11_1_17:76170646-76170775:-|nuORF ENST00000301634.11_1_17:76170646-76170775:-|nuORF ENST00000301634.11_1_17:76170646-76170775:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1792297363281 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 65.176 1 65.176 64.676 65.676 0 0 0 0 0.21486 1 12559 12559 0.45834 0 1 53676 8563 35565 35586 52533 52533 0.03249232062410101 WLPHLPHA 8 Unmodified _WLPHLPHA_ 0 0 0 ENST00000301634.11_1_17:76170646-76170775:-|nuORF ENST00000301634.11_1_17:76170646-76170775:-|nuORF ENST00000301634.11_1_17:76170646-76170775:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 324.1798095703125 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 65.426 1 65.426 64.926 65.926 0 0 0 0 0.21486 1 12615 12615 0.45834 0 1 53677 8563 35565 35586 52534 52534 0.03249232062410101 WLPHLPHA 8 Unmodified _WLPHLPHA_ 0 0 0 ENST00000301634.11_1_17:76170646-76170775:-|nuORF ENST00000301634.11_1_17:76170646-76170775:-|nuORF ENST00000301634.11_1_17:76170646-76170775:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 324.17987060546875 3 324.1801 969.518471 NaN NaN NaN NaN NaN NaN NaN 66.442 1 62.945 62.445 63.445 -3.4965 0 0 0 0.21486 1 12452 12452 0.45834 0 1 53678 8563 35565 35586 52535 52535 0.03249232062410101 WLPNGRDVS 9 Unmodified _WLPNGRDVS_ 0 0 0 REV__nc|ENSG00000084234|Q06481-6|APLP2 REV__nc|ENSG00000084234|Q06481-6|APLP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.268310546875 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 140.62 1 135.97 135.47 136.47 -4.6493 0 0 0 0.16777 1 27762 27762 4.7159 3.5011 1 + 53679 23959 35566 35587 52536 52536 3.401640651645721E-05 WLPPIVPT 8 Unmodified _WLPPIVPT_ 0 0 0 REV__ENST00000371586.6_2_1:52816616-52816928:-|nuORF REV__ENST00000371586.6_2_1:52816616-52816928:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 308.20550537109375 3 308.18474 921.53239 NaN NaN NaN NaN NaN NaN NaN 160.6 1 155.37 154.87 155.87 -5.2299 0 0 0 0.21486 1 31187 31187 0.40072 0 1 + 53680 21008 35567 35588 52537 52537 0.0684846477084875 WLPVSKPE 8 Unmodified _WLPVSKPE_ 0 0 0 ENST00000585171.5_1_17:15603407-15638248:+|nuORF;ENST00000578258.5_1_17:15604467-15614659:+|nuORF;nc|ENSG00000187607|Q9HBT8-2|ZNF286A;ENSG00000187607|ENST00000583566|ZNF286A ENST00000585171.5_1_17:15603407-15638248:+|nuORF ENST00000585171.5_1_17:15603407-15638248:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.2534484863281 2 478.26601 954.517468 NaN NaN NaN NaN NaN NaN NaN 104.99 1 104.99 104.49 105.49 0 0 0 0 0.2293 1 20638 20638 0.25148 0.12861 1 53681 11530 35568 35589 52538 52538 0.0383897290286086 WLPWPGLV 8 Unmodified _WLPWPGLV_ 0 0 0 REV__ENST00000431541.5_1_1:27114683-27114770:+|nuORF REV__ENST00000431541.5_1_1:27114683-27114770:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 323.1484680175781 3 323.184851 966.532724 NaN NaN NaN NaN NaN NaN NaN 132.77 1 128.13 127.63 128.63 -4.6399 0 0 0 0.21486 1 26175 26175 0.45834 0 1 + 53682 19974 35569 35590 52539 52539 0.04811884490709417 WLQEAMSAAFR 11 Unmodified _WLQEAMSAAFR_ 0 0 0 nc|ENSG00000133265|Q9NZL4-2|HSPBP1;ENSG00000133265|ENST00000433386|HSPBP1;nc|ENSG00000133265|Q9NZL4-3|HSPBP1 nc|ENSG00000133265|Q9NZL4-2|HSPBP1 nc|ENSG00000133265|Q9NZL4-2|HSPBP1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2183532714844 3 437.216774 1308.62849 -0.08906 -3.8938E-05 0.41502 0.00018145 0.32596 0.00014252 437.5507578180542 41.59 1.4409 38.939 38.166 39.607 -2.651 71 40 5 0 0 0 0.77484 1 7455 7455 6.6599 0.79171 1 2971600 53683 3794 35570 35591 52540 52540 -0.01347755451388366 WLQPIHFC 8 Unmodified _WLQPIHFC_ 0 0 0 REV__RAB11FIP5|p.P649Rfs*111|1|0.42|ENSG00000135631|chr2:73075537-73075537|G/-|frameshift_variant REV__RAB11FIP5|p.P649Rfs*111|1|0.42|ENSG00000135631|chr2:73075537-73075537|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2623291015625 2 522.260205 1042.50586 NaN NaN NaN NaN NaN NaN NaN 106.08 1 106.08 105.58 106.58 0 0 0 0 0.1742 1 20849 20849 3.5871 0.85506 1 + 53684 24539 35571 35592 52541 52541 -0.013695473921416124 WLQQLRWRLWI 11 Unmodified _WLQQLRWRLWI_ 0 0 0 REV__ENST00000339686.7_1_19:36002448-36003323:-|nuORF REV__ENST00000339686.7_1_19:36002448-36003323:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2716674804688 3 533.308655 1596.90414 NaN NaN NaN NaN NaN NaN NaN 140.69 1 135.82 135.32 136.32 -4.8678 0 0 0 0.22632 1 27131 27131 0.094841 0 1 + 53685 20699 35572 35593 52542 52542 0.12956064458830951 WLQRRRRKRWT 11 Unmodified _WLQRRRRKRWT_ 0 0 0 ENST00000540691.5_2_19:18671277-18672912:+|nuORF ENST00000540691.5_2_19:18671277-18672912:+|nuORF ENST00000540691.5_2_19:18671277-18672912:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7761840820312 3 547.993953 1640.96003 0.37804 0.00020717 0.37514 0.00020558 0.75319 0.00041274 548.3280851470109 97.476 0.3819 97.476 97.191 97.573 0 13 10 2 0 0 0 0.89122 1 19059 19059 0.094841 0.094841 1 1004800 53686 11073 35573 35594 52543 52543 0.16518710418995397 WLQRRRRKRWT 11 Unmodified _WLQRRRRKRWT_ 0 0 0 ENST00000540691.5_2_19:18671277-18672912:+|nuORF ENST00000540691.5_2_19:18671277-18672912:+|nuORF ENST00000540691.5_2_19:18671277-18672912:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7730712890625 3 547.993953 1640.96003 0.16574 9.0825E-05 3.1786 0.0017419 3.3443 0.0018327 547.9956979906655 56.193 0.1772 56.193 56.081 56.258 0 6 4 2 0 0 0 0.89134 1 10714 10714 0.094841 0 1 757760 53687 11073 35573 35594 52544 52544 0.16518710418995397 WLQRRRRKRWT 11 Unmodified _WLQRRRRKRWT_ 0 0 0 ENST00000540691.5_2_19:18671277-18672912:+|nuORF ENST00000540691.5_2_19:18671277-18672912:+|nuORF ENST00000540691.5_2_19:18671277-18672912:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7669677734375 3 547.993953 1640.96003 0.22949 0.00012576 -2.7888 -0.0015283 -2.5593 -0.0014025 548.3269599460942 96.731 0.2121 92.633 92.457 92.669 -4.0978 8 5 2 0 0 0 0.96227 1 18961 18961 0.073264 0.073264 1 587470 53688 11073 35573 35594 52545 52545 0.16518710418995397 WLRHLAAL 8 Unmodified _WLRHLAAL_ 0 0 0 ENST00000470040.5_1_1:228334217-228334421:+|nuORF ENST00000470040.5_1_1:228334217-228334421:+|nuORF ENST00000470040.5_1_1:228334217-228334421:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2669677734375 2 490.295436 978.57632 0.13838 6.7848E-05 -0.04323 -2.1195E-05 0.095153 4.6653E-05 490.29534443992975 129.31 1.0086 124.68 124.12 125.12 -4.6292 52 28 3 0 0 0 8448 1 25460 25460 1.7423 0 1 2672700 53689 10194 35574 35595 52546 52546 0.08617493987844682 WLRHLAAL 8 Unmodified _WLRHLAAL_ 0 0 0 ENST00000470040.5_1_1:228334217-228334421:+|nuORF ENST00000470040.5_1_1:228334217-228334421:+|nuORF ENST00000470040.5_1_1:228334217-228334421:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2676086425781 2 490.295436 978.57632 -0.075272 -3.6906E-05 0.38515 0.00018884 0.30988 0.00015193 490.29551567822926 129.38 0.91946 124.64 124.22 125.14 -4.7408 41 25 2 0 0 0 8448 1 24952 24952 0.62683 0 1 1844600 53690 10194 35574 35595 52547 52547 0.08617493987844682 WLRLRGHW 8 Unmodified _WLRLRGHW_ 0 0 0 nc|ENSG00000172426|Q9H1X1-2|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2121887207031 3 375.213915 1122.61992 NaN NaN NaN NaN NaN NaN NaN 17.654 1 16.139 15.639 16.639 -1.5148 0 0 0 0.2396 1 2575 2575 0.12286 0.049601 1 53691 12464 35575 35596 52548 52548 0.06351103484985288 WLRRRYLRLRY 11 Unmodified _WLRRRYLRLRY_ 0 0 0 ENSG00000147119|ENST00000276055|CHST7 ENSG00000147119|ENST00000276055|CHST7 ENSG00000147119|ENST00000276055|CHST7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 550.8035278320312 3 550.998704 1649.97428 NaN NaN NaN NaN NaN NaN NaN 10.723 1 10.723 10.223 11.223 0 0 0 0 0.23698 1 1360 1360 0 0 1 53692 4681 35576 35597 52549 52549 0.1752936284729003 WLRRRYLRLRY 11 Unmodified _WLRRRYLRLRY_ 0 0 0 ENSG00000147119|ENST00000276055|CHST7 ENSG00000147119|ENST00000276055|CHST7 ENSG00000147119|ENST00000276055|CHST7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 551.000732421875 3 550.998704 1649.97428 NaN NaN NaN NaN NaN NaN NaN 176.38 1 171.51 171.01 172.01 -4.8739 0 0 0 0.22632 1 35086 35086 0 0 1 53693 4681 35576 35597 52550 52550 0.1752936284729003 WLRRRYLRLRY 11 Unmodified _WLRRRYLRLRY_ 0 0 0 ENSG00000147119|ENST00000276055|CHST7 ENSG00000147119|ENST00000276055|CHST7 ENSG00000147119|ENST00000276055|CHST7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 551.000732421875 3 550.998704 1649.97428 NaN NaN NaN NaN NaN NaN NaN 176.04 1 171.14 170.64 171.64 -4.9008 0 0 0 0.22632 1 35094 35094 0 0 1 53694 4681 35576 35597 52551 52551 0.1752936284729003 WLRVVKFI 8 Unmodified _WLRVVKFI_ 0 0 0 ENST00000366645.1_1_1:231469469-231469601:-|nuORF ENST00000366645.1_1_1:231469469-231469601:-|nuORF ENST00000366645.1_1_1:231469469-231469601:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 354.2484436035156 3 354.22705 1059.65932 NaN NaN NaN NaN NaN NaN NaN 5.4799 1 5.4799 4.9799 5.9799 0 0 0 0 0.21486 1 293 293 0 0 1 53695 9049 35577 35598 52552 52552 0.13187810715862724 WLRVVKFI 8 Unmodified _WLRVVKFI_ 0 0 0 ENST00000366645.1_1_1:231469469-231469601:-|nuORF ENST00000366645.1_1_1:231469469-231469601:-|nuORF ENST00000366645.1_1_1:231469469-231469601:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 354.22747802734375 3 354.22705 1059.65932 NaN NaN NaN NaN NaN NaN NaN 9.0124 1 9.0124 8.5124 9.5124 0 0 0 0 0.21486 1 1000 1000 0 0 1 53696 9049 35577 35598 52553 52553 0.13187810715862724 WLSAILLL 8 Unmodified _WLSAILLL_ 0 0 0 REV__ENST00000234454.5_1_2:73118987-73119059:+|nuORF REV__ENST00000234454.5_1_2:73118987-73119059:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 15.771 1 14.555 14.055 15.055 -1.2159 0 0 0 0.21486 1 2448 2448 0.45834 0 1 + 53697 20077 35578 35599 52554 52554 0.11265324322005199 WLSAQFYEYY 10 Unmodified _WLSAQFYEYY_ 0 0 0 REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2373962402344 3 457.208161 1368.60265 -0.033789 -1.5449E-05 -0.074163 -3.3908E-05 -0.10795 -4.9356E-05 457.20808477483286 59.527 0.78732 59.527 59.176 59.963 0 33 21 3 0 0 0 0.52512 1 11418 11418 0.063865 0 1 1441800 + 53698 20594 35579 35600 52555 52555 -0.06690326421994541 WLSAQFYEYY 10 Unmodified _WLSAQFYEYY_ 0 0 0 REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 457.208161 1368.60265 -0.033789 -1.5449E-05 -0.074163 -3.3908E-05 -0.10795 -4.9356E-05 457.20808477483286 59.527 0.78732 59.527 59.176 59.963 0 0.0062075 0.00034124 NaN 0.063865 33 21 3 NaN NaN NaN NaN 0 NaN NaN 0 1441800 + 53699 20594 35579 35600 -0.06690326421994541 WLSAQFYEYY 10 Unmodified _WLSAQFYEYY_ 0 0 0 REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 457.208161 1368.60265 -0.029939 -1.3689E-05 -0.21429 -9.7974E-05 -0.24423 -0.00011166 457.20802041973616 62.444 0.48655 59.483 59.288 59.775 -2.9614 -0.038197 0.00014904 NaN 0.063865 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1822700 + 53700 20594 35579 35600 -0.06690326421994541 WLSAQFYEYY 10 Unmodified _WLSAQFYEYY_ 0 0 0 REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 457.208161 1368.60265 0.22059 0.00010085 -0.61594 -0.00028161 -0.39535 -0.00018076 457.20781507864564 62.806 0.79585 59.553 59.23 60.026 -3.2528 0.031989 -0.00040188 NaN 0.063865 29 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1128700 + 53701 20594 35579 35600 -0.06690326421994541 WLSYPETQH 9 Unmodified _WLSYPETQH_ 0 0 0 CYP20A1|p.L302Ifs*3|1|0.2|ENSG00000119004|chr2:203285656-203285657|-/A|frameshift_variant;CYP20A1|p.K301Nfs*6|1|0.34|ENSG00000119004|chr2:203285657-203285657|A/-|frameshift_variant;nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENSG00000119004|ENST00000356079|CYP20A1;CYP20A1|p.V162M|1|0.3|ENSG00000119004|chr2:203266565-203266565|G/A|missense_variant;ENST00000428265.5_1_2:204103762-204143319:+|nuORF CYP20A1|p.L302Ifs*3|1|0.2|ENSG00000119004|chr2:203285656-203285657|-/A|frameshift_variant CYP20A1|p.L302Ifs*3|1|0.2|ENSG00000119004|chr2:203285656-203285657|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.7266845703125 3 387.517218 1159.52982 -0.3082 -0.00011943 0.16941 6.5651E-05 -0.13879 -5.3784E-05 387.51723182369307 48.944 3.618 46.063 44.239 47.857 -2.8811 263 102 4 0 0 0 0.87497 1 9148 9148 8.1555 1.0538 1 7882300 53702 765 35580 35601 52556 52556 -0.04356035424757465 WLSYPETQH 9 Unmodified _WLSYPETQH_ 0 0 0 CYP20A1|p.L302Ifs*3|1|0.2|ENSG00000119004|chr2:203285656-203285657|-/A|frameshift_variant;CYP20A1|p.K301Nfs*6|1|0.34|ENSG00000119004|chr2:203285657-203285657|A/-|frameshift_variant;nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENSG00000119004|ENST00000356079|CYP20A1;CYP20A1|p.V162M|1|0.3|ENSG00000119004|chr2:203266565-203266565|G/A|missense_variant;ENST00000428265.5_1_2:204103762-204143319:+|nuORF CYP20A1|p.L302Ifs*3|1|0.2|ENSG00000119004|chr2:203285656-203285657|-/A|frameshift_variant CYP20A1|p.L302Ifs*3|1|0.2|ENSG00000119004|chr2:203285656-203285657|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.71240234375 3 387.517218 1159.52982 0.014452 5.6005E-06 -0.19253 -7.461E-05 -0.17808 -6.9009E-05 387.51709912857973 49.132 3.6702 46.133 44.111 47.782 -2.999 256 105 4 0 0 0 0.65153 1 8995 8995 9.544 2.5069 1 8320600 53703 765 35580 35601 52557 52557 -0.04356035424757465 WLTLILIG 8 Unmodified _WLTLILIG_ 0 0 0 REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1727294921875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 134.89 1 134.89 134.39 135.39 0 0 0 0 0.21486 1 26708 26708 0.45834 0 1 + 53704 25016 35581 35602 52558 52558 0.1126532432199383 WLTLILIG 8 Unmodified _WLTLILIG_ 0 0 0 REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1644287109375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 157.72 1 157.72 157.22 158.22 0 0 0 0 0.21486 1 31662 31662 0.45834 0 1 + 53705 25016 35581 35602 52559 52559 0.1126532432199383 WLTLILIG 8 Unmodified _WLTLILIG_ 0 0 0 REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1643981933594 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 139.6 1 134.96 134.46 135.46 -4.6439 0 0 0 0.21486 1 27560 27560 0.45834 0 1 + 53706 25016 35581 35602 52560 52560 0.1126532432199383 WLTLILIG 8 Unmodified _WLTLILIG_ 0 0 0 REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16510009765625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 135.59 1 130.76 130.26 131.26 -4.8307 0 0 0 0.21486 1 26107 26107 0.45834 0 1 + 53707 25016 35581 35602 52561 52561 0.1126532432199383 WLTLILIG 8 Unmodified _WLTLILIG_ 0 0 0 REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2225036621094 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 139.7 1 134.86 134.36 135.36 -4.8492 0 0 0 0.21486 1 26938 26938 0.45834 0 1 + 53708 25016 35581 35602 52562 52562 0.1126532432199383 WLVLLLLLL 9 Unmodified _WLVLLLLLL_ 0 0 0 REV__ENSG00000169413|ENST00000304677|RNASE6 REV__ENSG00000169413|ENST00000304677|RNASE6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 365.9229736328125 3 365.922856 1094.74674 NaN NaN NaN NaN NaN NaN NaN 10.71 1 9.8061 9.3061 10.306 -0.90401 0 0 0 0.23508 1 1363 1363 0 0 1 + 53709 18102 35582 35603 52563 52563 0.2031559186677896 WLVLLVRL 8 Unmodified _WLVLLVRL_ 0 0 0 REV__ENSG00000160539|ENST00000372264|PLPP7 REV__ENSG00000160539|ENST00000372264|PLPP7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.8953552246094 3 337.895301 1010.66407 NaN NaN NaN NaN NaN NaN NaN 5.8663 1 4.8575 4.3575 5.3575 -1.0089 0 0 0 0.21486 1 318 318 0 0 1 + 53710 17424 35583 35604 52564 52564 0.15916694858628944 WLVLLVRL 8 Unmodified _WLVLLVRL_ 0 0 0 REV__ENSG00000160539|ENST00000372264|PLPP7 REV__ENSG00000160539|ENST00000372264|PLPP7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 337.8948974609375 3 337.895301 1010.66407 NaN NaN NaN NaN NaN NaN NaN 6.1489 1 5.14 4.64 5.64 -1.0089 0 0 0 0.21486 1 363 363 0 0 1 + 53711 17424 35583 35604 52565 52565 0.15916694858628944 WLWLFFLIWMD 11 Unmodified _WLWLFFLIWMD_ 0 0 0 REV__ENSG00000204642|ENST00000259951|HLA-F REV__ENSG00000204642|ENST00000259951|HLA-F MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.38232421875 2 785.401784 1568.78901 NaN NaN NaN NaN NaN NaN NaN 158.83 1 153.56 153.06 154.06 -5.2748 0 0 0 0.22632 1 30831 30831 0.00056442 0 1 + 53712 19557 35584 35605 52566 52566 0.027371992128109923 WLYEQVDL 8 Unmodified _WLYEQVDL_ 0 0 0 ENST00000513338.1_1_5:138873973-138874111:+|nuORF;nc|ENSG00000266412|Q13772-2|NCOA4;NCOA4|p.S383Afs*18|1|0.21|ENSG00000266412|chr10:46010775-46010775|G/-|frameshift_variant;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4 ENST00000513338.1_1_5:138873973-138874111:+|nuORF ENST00000513338.1_1_5:138873973-138874111:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2808227539062 2 533.266207 1064.51786 NaN NaN NaN NaN NaN NaN NaN 136.95 1 136.95 136.45 137.45 0 0 0 0 0.23664 1 27148 27148 3.2813 2.4364 1 53713 7984 35585 35606 52567 52567 -0.01181652167952052 WLYKQVLE 8 Unmodified _WLYKQVLE_ 0 0 0 ENST00000506566.1_1_4:130824308-130824734:+|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF;ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20330810546875 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 149.83 1 149.83 149.33 150.33 0 0 0 0 0.23782 1 29994 29994 0.12286 0 1 53714 7927 35586 35607 52568 52568 0.050192174827316194 WLYKQVLE 8 Unmodified _WLYKQVLE_ 0 0 0 ENST00000506566.1_1_4:130824308-130824734:+|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF;ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2169189453125 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 106.72 1 102.46 101.96 102.96 -4.2638 0 0 0 0.21486 1 21011 21011 6.2058 0 1 53715 7927 35586 35607 52569 52569 0.050192174827316194 WLYKQVLE 8 Unmodified _WLYKQVLE_ 0 0 0 ENST00000506566.1_1_4:130824308-130824734:+|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF;ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015075683594 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 109.91 1 105.54 105.04 106.04 -4.3776 0 0 0 0.21486 1 21661 21661 3.5965 0 1 53716 7927 35586 35607 52570 52570 0.050192174827316194 WLYKQVLE 8 Unmodified _WLYKQVLE_ 0 0 0 ENST00000506566.1_1_4:130824308-130824734:+|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF;ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2013244628906 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 99.485 1 95.529 95.029 96.029 -3.9564 0 0 0 0.21486 1 19099 19099 3.5965 0 1 53717 7927 35586 35607 52571 52571 0.050192174827316194 WLYKQVLE 8 Unmodified _WLYKQVLE_ 0 0 0 ENST00000506566.1_1_4:130824308-130824734:+|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF;ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20159912109375 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 105.5 1 101.41 100.91 101.91 -4.0913 0 0 0 0.21486 1 20294 20294 3.5965 0 1 53718 7927 35586 35607 52572 52572 0.050192174827316194 WLYKQVLE 8 Unmodified _WLYKQVLE_ 0 0 0 ENST00000506566.1_1_4:130824308-130824734:+|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF;ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017517089844 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 112.7 1 108.43 107.93 108.93 -4.2725 0 0 0 0.21486 1 21700 21700 3.5965 0 1 53719 7927 35586 35607 52573 52573 0.050192174827316194 WLYKQVLE 8 Unmodified _WLYKQVLE_ 0 0 0 ENST00000506566.1_1_4:130824308-130824734:+|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF;ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2018737792969 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 116.13 1 111.77 111.27 112.27 -4.3585 0 0 0 0.21486 1 22359 22359 1.4819 0 1 53720 7927 35586 35607 52574 52574 0.050192174827316194 WLYPNPTA 8 Unmodified _WLYPNPTA_ 0 0 0 REV__FOXI1|p.S105Afs*14|2|0.16|ENSG00000168269|chr5:170106264-170106264|G/-|frameshift_variant REV__FOXI1|p.S105Afs*14|2|0.16|ENSG00000168269|chr5:170106264-170106264|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24310302734375 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 175.57 1 170.67 170.17 171.17 -4.9008 0 0 0 0.23749 1 34996 34996 0.68139 0.55358 1 + 53721 18010 35587 35608 52575 52575 -0.011298866482889025 WLYRRWNERN 10 Unmodified _WLYRRWNERN_ 0 0 0 REV__ENST00000519078.6_1_10:62538154-62544481:+|nuORF REV__ENST00000519078.6_1_10:62538154-62544481:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 498.2601013183594 3 498.256731 1491.74836 NaN NaN NaN NaN NaN NaN NaN 105.61 1 105.61 105.11 106.11 0 0 0 0 2.8426 1 20757 20757 0.69767 0.6844 1 + 53722 20525 35588 35609 52576 52576 0.022159939374432724 WLYRRWNERNQ 11 Unmodified _WLYRRWNERNQ_ 0 0 0 REV__ENST00000519078.6_1_10:62538154-62544481:+|nuORF REV__ENST00000519078.6_1_10:62538154-62544481:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3609619140625 2 810.910747 1619.80694 NaN NaN NaN NaN NaN NaN NaN 129.21 1 124.47 123.97 124.97 -4.7408 0 0 0 0.23698 1 24864 24864 0.30703 0 1 + 53723 20525 35589 35610 52577 52577 0.021830505119169175 WMECGCHCPS 10 Unmodified _WMECGCHCPS_ 0 0 0 SLC22A7|p.G477Afs*67|1|0.33|ENSG00000137204|chr6:43304077-43304077|G/-|frameshift_variant SLC22A7|p.G477Afs*67|1|0.33|ENSG00000137204|chr6:43304077-43304077|G/-|frameshift_variant SLC22A7|p.G477Afs*67|1|0.33|ENSG00000137204|chr6:43304077-43304077|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3171997070312 2 576.690115 1151.36568 0.1952 0.00011257 0.17517 0.00010102 0.37037 0.00021359 577.1916971560088 15.112 0.76535 15.112 14.842 15.607 0 39 21 2 0 0 0 1.1347 1 2356 2356 0 0 1 879720 53724 25675 35590 35611 52578 52578 -0.2039515877465874 WMECGCHCPS 10 Unmodified _WMECGCHCPS_ 0 0 0 SLC22A7|p.G477Afs*67|1|0.33|ENSG00000137204|chr6:43304077-43304077|G/-|frameshift_variant SLC22A7|p.G477Afs*67|1|0.33|ENSG00000137204|chr6:43304077-43304077|G/-|frameshift_variant SLC22A7|p.G477Afs*67|1|0.33|ENSG00000137204|chr6:43304077-43304077|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3201293945312 2 576.690115 1151.36568 NaN NaN NaN NaN NaN NaN NaN 23.123 1 21.57 21.07 22.07 -1.5532 0 0 0 2.8426 1 3978 3978 0 0 1 53725 25675 35590 35611 52579 52579 -0.2039515877465874 WMECGCHCPS 10 Unmodified _WMECGCHCPS_ 0 0 0 SLC22A7|p.G477Afs*67|1|0.33|ENSG00000137204|chr6:43304077-43304077|G/-|frameshift_variant SLC22A7|p.G477Afs*67|1|0.33|ENSG00000137204|chr6:43304077-43304077|G/-|frameshift_variant SLC22A7|p.G477Afs*67|1|0.33|ENSG00000137204|chr6:43304077-43304077|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3301391601562 2 576.690115 1151.36568 NaN NaN NaN NaN NaN NaN NaN 37.319 1 34.971 34.471 35.471 -2.3479 0 0 0 2.8426 1 6614 6614 0 0 1 53726 25675 35590 35611 52580 52580 -0.2039515877465874 WMEPWPQPSC 10 Unmodified _WMEPWPQPSC_ 0 0 0 ENST00000483722.1_1_6:41166134-41168799:-|nuORF ENST00000483722.1_1_6:41166134-41168799:-|nuORF ENST00000483722.1_1_6:41166134-41168799:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7638549804688 2 630.762452 1259.51035 NaN NaN NaN NaN NaN NaN NaN 42.552 1 42.552 42.052 43.052 0 0 0 0 2.8426 1 7961 7961 0.043787 0.037832 1 53727 10418 35591 35612 52581 52581 -0.10902451031529381 WMEWRRPRPQ 10 Unmodified _WMEWRRPRPQ_ 0 0 0 ENST00000489097.5_1_1:6527238-6527559:-|nuORF ENST00000489097.5_1_1:6527238-6527559:-|nuORF ENST00000489097.5_1_1:6527238-6527559:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24542236328125 3 481.247179 1440.71971 NaN NaN NaN NaN NaN NaN NaN 107.67 1 107.67 107.17 108.17 0 0 0 0 2.8426 1 21171 21171 3.8763 0.80407 1 53728 10494 35592 35613 52582 52582 0.01697553036615318 WMEWRRPRPQ 10 Unmodified _WMEWRRPRPQ_ 0 0 0 ENST00000489097.5_1_1:6527238-6527559:-|nuORF ENST00000489097.5_1_1:6527238-6527559:-|nuORF ENST00000489097.5_1_1:6527238-6527559:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2485046386719 3 481.247179 1440.71971 NaN NaN NaN NaN NaN NaN NaN 15.78 1 14.426 13.926 14.926 -1.3534 0 0 0 2.8426 1 2199 2199 0.13989 0 1 53729 10494 35592 35613 52583 52583 0.01697553036615318 WMFLWNKG 8 Unmodified _WMFLWNKG_ 0 0 0 ENST00000568924.1_1_16:89367231-89379861:-|nuORF ENST00000568924.1_1_16:89367231-89379861:-|nuORF ENST00000568924.1_1_16:89367231-89379861:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2673950195312 2 541.26803 1080.52151 0.52436 0.00028382 -2.6656 -0.0014428 -2.1412 -0.001159 541.2664057553781 20.57 0.80951 19.173 18.688 19.498 -1.3966 31 22 2 0 0 0 8448 1 3420 3420 0.62683 0.21856 1 1587400 53730 11400 35593 35614 52584 52584 -0.015532608751072985 WMILNRPQPRW 11 Unmodified _WMILNRPQPRW_ 0 0 0 REV__nc|ENSG00000137502|Q15771-2|RAB30 REV__nc|ENSG00000137502|Q15771-2|RAB30 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 500.2613830566406 3 499.602962 1495.78706 0.029437 1.4707E-05 0.60817 0.00030384 0.63761 0.00031855 499.6032274578307 63.843 0.62699 60.427 60.113 60.74 -3.4158 50 17 4 0 0 0 0.60781 1 11946 11946 5.4027 3.9476 1 6705100 + 53731 24058 35594 35615 52585 52585 0.05899583247537521 WMILNRPQPRW 11 Unmodified _WMILNRPQPRW_ 0 0 0 REV__nc|ENSG00000137502|Q15771-2|RAB30 REV__nc|ENSG00000137502|Q15771-2|RAB30 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 499.602962 1495.78706 -0.1111 -5.5504E-05 0.79589 0.00039763 0.68479 0.00034212 499.93766475135425 60.372 0.63044 60.372 59.996 60.626 0 0.0025858 0.00028855 NaN 5.4027 47 17 4 NaN NaN NaN NaN 0 NaN NaN 0 4533200 + 53732 24058 35594 35615 0.05899583247537521 WMILNRPQPRW 11 Unmodified _WMILNRPQPRW_ 0 0 0 REV__nc|ENSG00000137502|Q15771-2|RAB30 REV__nc|ENSG00000137502|Q15771-2|RAB30 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 499.602962 1495.78706 0.067754 3.385E-05 0.4178 0.00020874 0.48556 0.00024259 499.60320348489023 63.305 0.60472 60.307 59.951 60.555 -2.9975 -0.061904 -0.00027813 NaN 5.4027 53 17 4 NaN NaN NaN NaN 0 NaN NaN 0 7716900 + 53733 24058 35594 35615 0.05899583247537521 WMILNRPQPRW 11 Unmodified _WMILNRPQPRW_ 0 0 0 REV__nc|ENSG00000137502|Q15771-2|RAB30 REV__nc|ENSG00000137502|Q15771-2|RAB30 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 499.602962 1495.78706 0.1058 5.286E-05 0.55834 0.00027895 0.66414 0.00033181 499.6031701544614 63.627 0.68896 60.37 59.988 60.677 -3.2567 0.0011932 -6.7496E-05 NaN 5.4027 58 19 4 NaN NaN NaN NaN 0 NaN NaN 0 7575900 + 53734 24058 35594 35615 0.05899583247537521 WMKMYSFS 8 Unmodified _WMKMYSFS_ 0 0 0 ENST00000540210.5_1_10:70502250-70506946:+|nuORF ENST00000540210.5_1_10:70502250-70506946:+|nuORF ENST00000540210.5_1_10:70502250-70506946:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 361.1669616699219 3 360.49448 1078.46161 -0.22878 -8.2473E-05 -0.55854 -0.00020135 -0.78731 -0.00028382 361.161501085489 22.503 0.52994 22.503 22.293 22.823 0 32 14 3 0 0 0 8448 1 3796 3796 10.074 1.9184 1 1134500 53735 11067 35595 35616 52586 52586 -0.07448319600621289 WMLFKALLI 9 Unmodified _WMLFKALLI_ 0 0 0 ENSG00000153294|ENST00000283303|ADGRF4 ENSG00000153294|ENST00000283303|ADGRF4 ENSG00000153294|ENST00000283303|ADGRF4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.8964538574219 3 378.896313 1133.66711 NaN NaN NaN NaN NaN NaN NaN 11.246 1 10.342 9.8416 10.842 -0.90401 0 0 0 0.23508 1 1475 1475 0 0 1 53736 4967 35596 35617 52587 52587 0.10562201921106862 WMLWSFKNRVT 11 Unmodified _WMLWSFKNRVT_ 0 0 0 nc|ENSG00000100099|Q9NQG7-2|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000429411.5_1_22:26849201-26866860:-|nuORF nc|ENSG00000100099|Q9NQG7-2|HPS4 nc|ENSG00000100099|Q9NQG7-2|HPS4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2577819824219 3 489.923702 1466.74928 -0.96836 -0.00047442 0.32815 0.00016077 -0.64021 -0.00031365 489.9238247552893 21.361 0.73347 19.64 19.353 20.087 -1.7211 34 20 2 0 0 0 0.6625 1 3399 3399 0.00056442 0 1 1343600 53737 12252 35597 35618 52588 52588 0.03457072262085603 WMRPPGKG 8 Unmodified _WMRPPGKG_ 0 0 0 VASH1|p.K5Rfs*146|4|0.36|ENSG00000071246|chr14:76762828-76762828|G/-|frameshift_variant VASH1|p.K5Rfs*146|4|0.36|ENSG00000071246|chr14:76762828-76762828|G/-|frameshift_variant VASH1|p.K5Rfs*146|4|0.36|ENSG00000071246|chr14:76762828-76762828|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 7.668 1 6.6532 6.1532 7.1532 -1.0148 0 0 0 0.2396 1 646 646 0 0 1 53738 26566 35598 35619 52589 52589 0.008252992936377268 WMRPPGKG 8 Unmodified _WMRPPGKG_ 0 0 0 VASH1|p.K5Rfs*146|4|0.36|ENSG00000071246|chr14:76762828-76762828|G/-|frameshift_variant VASH1|p.K5Rfs*146|4|0.36|ENSG00000071246|chr14:76762828-76762828|G/-|frameshift_variant VASH1|p.K5Rfs*146|4|0.36|ENSG00000071246|chr14:76762828-76762828|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 10.553 1 9.4865 8.9865 9.9865 -1.0664 0 0 0 0.21486 1 1147 1147 0 0 1 53739 26566 35598 35619 52590 52590 0.008252992936377268 WMRPPGKG 8 Unmodified _WMRPPGKG_ 0 0 0 VASH1|p.K5Rfs*146|4|0.36|ENSG00000071246|chr14:76762828-76762828|G/-|frameshift_variant VASH1|p.K5Rfs*146|4|0.36|ENSG00000071246|chr14:76762828-76762828|G/-|frameshift_variant VASH1|p.K5Rfs*146|4|0.36|ENSG00000071246|chr14:76762828-76762828|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 3 310.165574 927.474891 NaN NaN NaN NaN NaN NaN NaN 11.154 1 10.088 9.5879 10.588 -1.0664 0 0 0 0.21486 1 1245 1245 0 0 1 53740 26566 35598 35619 52591 52591 0.008252992936377268 WMRRMRILHRL 11 Unmodified _WMRRMRILHRL_ 0 0 0 ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6883544921875 3 523.302741 1566.88639 0.029925 1.566E-05 -0.87542 -0.00045811 -0.84549 -0.00044245 523.6366211819574 90.433 0.91798 90.433 90.015 90.933 0 32 25 2 0 0 0 0.8267 1 17747 17747 0.08335 0.08335 1 4265100 53741 9801 35599 35620 52592 52592 0.12562702660693503 WMRRMRILHRL 11 Unmodified _WMRRMRILHRL_ 0 0 0 ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6785278320312 3 523.302741 1566.88639 -0.3963 -0.00020739 -0.56523 -0.00029579 -0.96153 -0.00050317 523.636964396927 94.073 0.42093 89.93 89.752 90.173 -4.1435 18 11 2 0 0 0 0.82392 1 17977 17977 0.45452 0.35968 1 3060800 53742 9801 35599 35620 52593 52593 0.12562702660693503 WMRTIPRY 8 Unmodified _WMRTIPRY_ 0 0 0 EPHA7|p.Q4Kfs*97|1|0.36|ENSG00000135333|chr6:93419333-93419333|A/-|frameshift_variant EPHA7|p.Q4Kfs*97|1|0.36|ENSG00000135333|chr6:93419333-93419333|A/-|frameshift_variant EPHA7|p.Q4Kfs*97|1|0.36|ENSG00000135333|chr6:93419333-93419333|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2198181152344 3 374.867416 1121.58042 0.038762 1.4531E-05 1.3696 0.00051342 1.4084 0.00052795 374.86781257931324 50.048 0.61374 50.048 49.686 50.3 0 32 17 3 0 0 0 0.752 1 9430 9430 6.7232 0.51738 1 2286900 53743 11775 35600 35621 52594 52594 0.02449215419255779 WNAIQSQLY 9 Unmodified _WNAIQSQLY_ 0 0 0 REV__ENST00000367763.7_2_1:170508440-170511675:+|nuORF REV__ENST00000367763.7_2_1:170508440-170511675:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.22064208984375 3 374.857463 1121.55056 0.15752 5.9047E-05 -0.55884 -0.00020949 -0.40132 -0.00015044 374.857226687278 45.791 0.69118 45.791 45.448 46.139 0 40 19 3 0 0 0 0.72108 1 8670 8670 5.2969 0.39987 1 1546000 + 53744 20929 35601 35622 52595 52595 -0.005354450451022785 WNAIQSQLY 9 Unmodified _WNAIQSQLY_ 0 0 0 REV__ENST00000367763.7_2_1:170508440-170511675:+|nuORF REV__ENST00000367763.7_2_1:170508440-170511675:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2186279296875 3 374.857463 1121.55056 -0.32769 -0.00012284 0.056756 2.1275E-05 -0.27094 -0.00010156 374.85740792337566 48.68 0.69348 45.811 45.519 46.213 -2.869 47 19 3 0 0 0 0.72108 1 9282 9282 5.2969 0.39987 1 2693800 + 53745 20929 35601 35622 52596 52596 -0.005354450451022785 WNDEEWDES 9 Unmodified _WNDEEWDES_ 0 0 0 REV__ENSG00000182459|ENST00000333437|TEX19 REV__ENSG00000182459|ENST00000333437|TEX19 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 403.8152770996094 3 403.81588 1208.42581 NaN NaN NaN NaN NaN NaN NaN 9.8726 1 9.0784 8.5784 9.5784 -0.79424 0 0 0 0.19631 1 1182 1182 0.073264 0 1 + 53746 18781 35602 35623 52597 52597 -0.1700640704293619 WNEGRPYLFQ 10 Unmodified _WNEGRPYLFQ_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2;ENST00000433579.1_1_7:42952135-42964395:-|nuORF;ENST00000411875.1_1_7:42961455-42966220:-|nuORF ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2154846191406 3 437.21565 1308.62512 0.029681 1.2977E-05 -0.79766 -0.00034875 -0.76798 -0.00033577 437.2153627025327 12.888 0.51832 12.888 12.649 13.167 0 36 14 4 0 0 0 0.74977 1 1818 1818 5.7834 1.3773 1 5871100 53747 2392 35603 35624 52598 52598 -0.01684682233735657 WNEGRPYLFQ 10 Unmodified _WNEGRPYLFQ_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2;ENST00000433579.1_1_7:42952135-42964395:-|nuORF;ENST00000411875.1_1_7:42961455-42966220:-|nuORF ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2350769042969 3 437.21565 1308.62512 -0.78759 -0.00034435 0.055425 2.4233E-05 -0.73216 -0.00032011 437.21568447555995 13.573 0.39017 12.563 12.413 12.803 -1.0098 29 10 4 0 0 0 0.72179 1 1967 1967 8.9762 2.7419 1 4937200 53748 2392 35603 35624 52599 52599 -0.01684682233735657 WNEVFIGYG 9 Unmodified _WNEVFIGYG_ 0 0 0 SLC46A3|p.L309*|1|0.24|ENSG00000139508|chr13:28712814-28712814|A/-|frameshift_variant;nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3;ENSG00000139508|ENST00000266943|SLC46A3;nc|ENSG00000139508|Q7Z3Q1-2|SLC46A3 SLC46A3|p.L309*|1|0.24|ENSG00000139508|chr13:28712814-28712814|A/-|frameshift_variant SLC46A3|p.L309*|1|0.24|ENSG00000139508|chr13:28712814-28712814|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 362.1622009277344 3 362.174792 1083.50255 NaN NaN NaN NaN NaN NaN NaN 29.404 1 27.448 26.948 27.948 -1.9561 0 0 0 0.23508 1 5285 5285 5.2969 0 1 53749 4249 35604 35625 52600 52600 -0.03586518965153118 WNLGLQTAY 9 Unmodified _WNLGLQTAY_ 0 0 0 ENST00000455080.5_1_22:26907091-26908398:-|nuORF ENST00000455080.5_1_22:26907091-26908398:-|nuORF ENST00000455080.5_1_22:26907091-26908398:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2664794921875 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 132 1 127.2 126.7 127.7 -4.799 0 0 0 0.19674 1 25412 25412 1.2148 0 1 53750 10017 35605 35626 52601 52601 -0.0005883007381726202 WNNLDNRY 8 Unmodified _WNNLDNRY_ 0 0 0 REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant REV__HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7733764648438 2 547.75433 1093.49411 NaN NaN NaN NaN NaN NaN NaN 55.803 1 52.627 52.127 53.127 -3.1761 0 0 0 0.21323 1 10368 10368 14.582 2.9414 1 + 53751 23644 35606 35627 52602 52602 -0.048900728817670824 WNQCCGAYG 9 Unmodified _WNQCCGAYG_ 0 0 0 nc|ENSG00000108219|Q8NG11-3|TSPAN14 nc|ENSG00000108219|Q8NG11-3|TSPAN14 nc|ENSG00000108219|Q8NG11-3|TSPAN14 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 334.4582824707031 3 334.458317 1000.35312 0.17107 5.7215E-05 -3.6846 -0.0012324 -3.5136 -0.0011751 334.45703677111703 63.421 0.20972 60.005 59.903 60.113 -3.4158 7 5 2 0 0 0 0.5428 1 11862 11862 7.0341 6.7271 1 311370 53752 12277 35607 35628 52603 52603 -0.1470411085106207 WNQCCGAYG 9 Unmodified _WNQCCGAYG_ 0 0 0 nc|ENSG00000108219|Q8NG11-3|TSPAN14 nc|ENSG00000108219|Q8NG11-3|TSPAN14 nc|ENSG00000108219|Q8NG11-3|TSPAN14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 334.458317 1000.35312 -0.43883 -0.00014677 -3.8804 -0.0012978 -4.3192 -0.0014446 334.45698742790427 63.226 0.17574 59.969 59.846 60.022 -3.2567 -0.017952 -3.6197E-05 NaN 7.0341 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 596380 53753 12277 35607 35628 -0.1470411085106207 WNRQRAEDY 9 Unmodified _WNRQRAEDY_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 412.6153869628906 3 413.195138 1236.56358 0.050278 2.0775E-05 -1.3297 -0.00054943 -1.2794 -0.00052865 413.52894798106547 32.302 0.38415 32.302 32.118 32.502 0 17 10 2 0 0 0 0.6226 1 5845 5845 0.40827 0.36448 1 1022900 + 53754 18981 35608 35629 52604 52604 -0.0452361393299725 WNRQRAEDY 9 Unmodified _WNRQRAEDY_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 413.195138 1236.56358 0.15461 6.3883E-05 -1.1691 -0.00048306 -1.0145 -0.00041918 413.19453083796463 34.834 0.38435 32.582 32.359 32.743 -2.2527 0.13978 0.00012003 NaN 0.40827 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 561660 + 53755 18981 35608 35629 -0.0452361393299725 WNRRHEPA 8 Unmodified _WNRRHEPA_ 0 0 0 ENSG00000124713|ENST00000372808|GNMT ENSG00000124713|ENST00000372808|GNMT ENSG00000124713|ENST00000372808|GNMT MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2719116210938 2 533.270481 1064.52641 NaN NaN NaN NaN NaN NaN NaN 179.73 1 174.87 174.37 175.37 -4.868 0 0 0 0.21486 1 35818 35818 2.5775 0.27475 1 53756 3329 35609 35630 52605 52605 -0.003272406881023926 WNSFMDLWKLE 11 Unmodified _WNSFMDLWKLE_ 0 0 0 REV__ENSG00000169221|ENST00000409939|TBC1D10B REV__ENSG00000169221|ENST00000409939|TBC1D10B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2579650878906 3 490.235834 1467.68567 NaN NaN NaN NaN NaN NaN NaN 136.86 1 131.94 131.44 132.44 -4.9216 0 0 0 0.22632 1 26307 26307 5.4027 0.79896 1 + 53757 18088 35610 35631 52606 52606 -0.029463329656664428 WNWDKKEPT 9 Unmodified _WNWDKKEPT_ 0 0 0 tr|U7SV01|U7SV01_FUSNUWGRdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01456PE=4SV=1 tr|U7SV01|U7SV01_FUSNUWGRdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01456PE=4SV=1 tr|U7SV01|U7SV01_FUSNUWGRdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01456PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2941284179688 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 125.49 1 125.49 124.99 125.99 0 0 0 0 0.19626 1 24750 24750 0.40827 0.40231 1 53758 26222 35611 35632 52607 52607 -0.021160600163966592 WPAPPPPPP 9 Unmodified _WPAPPPPPP_ 0 0 0 ENSG00000182601|ENST00000331351|HS3ST4 ENSG00000182601|ENST00000331351|HS3ST4 ENSG00000182601|ENST00000331351|HS3ST4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7232971191406 2 478.255446 954.496338 0.36455 0.00017435 1.0053 0.00048079 1.3699 0.00065514 478.2561227380136 34.653 0.38872 32.377 32.096 32.484 -2.2766 15 10 2 0 0 0 0.80737 1 6091 6091 14.582 0 1 380120 53759 6799 35612 35633 52608 52608 0.01727007593979124 WPASRLLP 8 Unmodified _WPASRLLP_ 0 0 0 REV__ENST00000338820.7_1_10:74095033-74095504:-|nuORF REV__ENST00000338820.7_1_10:74095033-74095504:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 470.2892150878906 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 137.7 1 137.7 137.2 138.2 0 0 0 0 0.22665 1 27316 27316 0.68139 0 1 + 53760 20687 35613 35634 52609 52609 0.06206098859604481 WPAVALHL 8 Unmodified _WPAVALHL_ 0 0 0 nc|ENSG00000177595|Q9HB75-4|PIDD1;ENST00000524486.5_1_11:799309-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1;ENST00000527357.5_1_11:799813-799969:-|nuORF nc|ENSG00000177595|Q9HB75-4|PIDD1 nc|ENSG00000177595|Q9HB75-4|PIDD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7638854980469 2 453.763438 905.512323 NaN NaN NaN NaN NaN NaN NaN 160.17 1 154.92 154.42 155.42 -5.2526 0 0 0 0.23294 1 31084 31084 1.7423 0 1 53761 6522 35614 35635 52610 52610 0.05578713830891502 WPCLRRQHMTR 11 Unmodified _WPCLRRQHMTR_ 0 0 0 REV__ENST00000379091.8_1_8:81397879-81397924:+|nuORF REV__ENST00000379091.8_1_8:81397879-81397924:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.381103515625 2 742.379714 1482.74488 NaN NaN NaN NaN NaN NaN NaN 152.85 1 147.63 147.13 148.13 -5.2209 0 0 0 0.22632 1 29626 29626 0.026206 0.012941 1 + 53762 21129 35615 35636 52611 52611 0.022812845675161952 WPCMRLAPL 9 Unmodified _WPCMRLAPL_ 0 0 0 REV__ENST00000563156.1_1_16:783563-783767:+|nuORF REV__ENST00000563156.1_1_16:783563-783767:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7797241210938 2 543.78299 1085.55143 0.81454 0.00044293 1.0744 0.00058426 1.889 0.0010272 543.7837233856028 106.2 1.5902 102.11 101.16 102.75 -4.0913 145 45 5 0 0 0 0.48644 1 20326 20326 20.454 2.0805 1 30328000 + 53763 23072 35616 35637 52612 52612 0.012073547985892219 WPGHPLPL 8 Unmodified _WPGHPLPL_ 0 0 0 TNS2|p.R730W|1|0.2|ENSG00000111077|chr12:53059829-53059829|C/T|missense_variant TNS2|p.R730W|1|0.2|ENSG00000111077|chr12:53059829-53059829|C/T|missense_variant TNS2|p.R730W|1|0.2|ENSG00000111077|chr12:53059829-53059829|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.7548522949219 2 458.755613 915.496673 NaN NaN NaN NaN NaN NaN NaN 8.6399 1 7.8456 7.3456 8.3456 -0.79424 0 0 0 0.21486 1 917 917 0 0 1 53764 25868 35617 35638 52613 52613 0.03554427313861197 WPGLALHL 8 Unmodified _WPGLALHL_ 0 0 0 ENST00000271469.7_2_1:162531391-162531544:+|nuORF ENST00000271469.7_2_1:162531391-162531544:+|nuORF ENST00000271469.7_2_1:162531391-162531544:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7641296386719 2 453.763438 905.512323 NaN NaN NaN NaN NaN NaN NaN 131.05 1 131.05 130.55 131.55 0 0 0 0 0.21486 1 25909 25909 2.8892 0 1 53765 8403 35618 35639 52614 52614 0.05578713830891502 WPGLALHL 8 Unmodified _WPGLALHL_ 0 0 0 ENST00000271469.7_2_1:162531391-162531544:+|nuORF ENST00000271469.7_2_1:162531391-162531544:+|nuORF ENST00000271469.7_2_1:162531391-162531544:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7640686035156 2 453.763438 905.512323 NaN NaN NaN NaN NaN NaN NaN 152.78 1 148.01 147.51 148.51 -4.7684 0 0 0 0.2396 1 30358 30358 0.0082765 0 1 53766 8403 35618 35639 52615 52615 0.05578713830891502 WPGLLHAL 8 Unmodified _WPGLLHAL_ 0 0 0 ENST00000326181.10_1_16:2227562-2227895:+|nuORF ENST00000326181.10_1_16:2227562-2227895:+|nuORF ENST00000326181.10_1_16:2227562-2227895:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7631530761719 2 453.763438 905.512323 NaN NaN NaN NaN NaN NaN NaN 14.298 1 13.125 12.625 13.625 -1.173 0 0 0 0.2396 1 1925 1925 0.0082765 0 1 53767 8743 35619 35640 52616 52616 0.055787138308687645 WPGRPRPR 8 Unmodified _WPGRPRPR_ 0 0 0 REV__ENST00000472523.1_1_3:147111545-147225741:+|nuORF REV__ENST00000472523.1_1_3:147111545-147225741:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 341.207275390625 3 341.198265 1020.57297 NaN NaN NaN NaN NaN NaN NaN 31.961 1 29.73 29.23 30.23 -2.2305 0 0 0 0.21486 1 5813 5813 1.6526 0 1 + 53768 22055 35620 35641 52617 52617 0.06350243933832189 WPHMICEDVRR 11 Unmodified _WPHMICEDVRR_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant;DNAH9|p.I3688Tfs*40|1|0.11|ENSG00000007174|chr17:11886915-11886924|ATCATGAACG/-|frameshift_variant;DNAH9|p.P2650Hfs*2|2|0.29|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant;DNAH9|p.K1203Rfs*6|1|0.24|ENSG00000007174|chr17:11680749-11680749|A/-|frameshift_variant;DNAH9|p.N816Tfs*3|1|0.34|ENSG00000007174|chr17:11652851-11652851|A/-|frameshift_variant nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 480.7518615722656 3 481.232429 1440.67546 NaN NaN NaN NaN NaN NaN NaN 7.3607 1 6.3459 5.8459 6.8459 -1.0148 0 0 0 0.22632 1 586 586 0.00056442 0 1 53769 1016 35621 35642 52618 52618 -0.02725219171907156 WPILVFEI 8 Unmodified _WPILVFEI_ 0 0 0 REV__ENSG00000064989|ENST00000392370|CALCRL REV__ENSG00000064989|ENST00000392370|CALCRL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 509.29541015625 2 508.794404 1015.57425 0.26329 0.00013396 -0.56962 -0.00028982 -0.30633 -0.00015586 508.7939864998767 121.52 0.65226 116.99 116.71 117.37 -4.5305 28 17 2 0 0 0 0.8748 1 23469 23469 14.838 2.5976 1 2704500 + 53770 14178 35622 35643 52619 52619 0.06709020459368276 WPILVFEI 8 Unmodified _WPILVFEI_ 0 0 0 REV__ENSG00000064989|ENST00000392370|CALCRL REV__ENSG00000064989|ENST00000392370|CALCRL MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 508.794404 1015.57425 0.17819 9.066E-05 -0.62381 -0.00031739 -0.44563 -0.00022673 508.7940513230134 121.74 0.67324 117.05 116.63 117.3 -4.6873 0.032192 -2.9404E-05 NaN 14.838 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3091900 + 53771 14178 35622 35643 0.06709020459368276 WPIWYHCRRPR 11 Unmodified _WPIWYHCRRPR_ 0 0 0 ENSG00000179826|ENST00000621697|MRGPRX3 ENSG00000179826|ENST00000621697|MRGPRX3 ENSG00000179826|ENST00000621697|MRGPRX3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4017944335938 2 785.404047 1568.79354 NaN NaN NaN NaN NaN NaN NaN 54.222 1 51.084 50.584 51.584 -3.1377 0 0 0 0.22632 1 10029 10029 0.026206 0 1 53772 6644 35623 35644 52620 52620 0.031895211988967276 WPKKIELK 8 Unmodified _WPKKIELK_ 0 0 0 REV__tr|U7SZN9|U7SZN9_FUSNUBifunctionalfolatesynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00813PE=3SV=1 REV__tr|U7SZN9|U7SZN9_FUSNUBifunctionalfolatesynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00813PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 347.9583435058594 3 347.886694 1040.63825 NaN NaN NaN NaN NaN NaN NaN 9.8618 1 8.8271 8.3271 9.3271 -1.0347 0 0 0 0.21486 1 1033 1033 0 0 1 + 53773 25255 35624 35645 52621 52621 0.11955800616306078 WPLHGRQV 8 Unmodified _WPLHGRQV_ 0 0 0 ENST00000372324.5_1_1:44456265-44456820:+|nuORF ENST00000372324.5_1_1:44456265-44456820:+|nuORF ENST00000372324.5_1_1:44456265-44456820:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 498.25384521484375 2 496.774868 991.535184 0.21512 0.00010687 -0.94811 -0.000471 -0.73299 -0.00036413 496.77433240755425 159.97 0.74791 155.17 154.83 155.58 -4.7952 64 20 4 0 0 0 8448 1 31806 31806 10.074 0 1 9964700 53774 9177 35625 35646 52622 52622 0.03907732948368903 WPLHGRQV 8 Unmodified _WPLHGRQV_ 0 0 0 ENST00000372324.5_1_1:44456265-44456820:+|nuORF ENST00000372324.5_1_1:44456265-44456820:+|nuORF ENST00000372324.5_1_1:44456265-44456820:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 496.774868 991.535184 0.19991 9.9311E-05 -0.81084 -0.0004028 -0.61092 -0.00030349 496.7743270836038 155.08 0.87314 155.08 154.65 155.52 0 -0.048037 7.8926E-05 NaN 10.074 50 24 3 NaN NaN NaN NaN 0 NaN NaN 0 9303600 53775 9177 35625 35646 0.03907732948368903 WPLRRLTLP 9 Unmodified _WPLRRLTLP_ 0 0 0 REV__BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant REV__BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3299560546875 2 576.356025 1150.6975 NaN NaN NaN NaN NaN NaN NaN 128.72 1 123.9 123.4 124.4 -4.817 0 0 0 0.19624 1 24709 24709 0.0033805 0 1 + 53776 13207 35626 35647 52623 52623 0.1281769663050909 WPLVLLLL 8 Unmodified _WPLVLLLL_ 0 0 0 REV__nc|ENSG00000072201|Q8TBB1-2|LNX1 REV__nc|ENSG00000072201|Q8TBB1-2|LNX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 322.8977966308594 3 322.884402 965.631375 NaN NaN NaN NaN NaN NaN NaN 9.0662 1 9.0662 8.5662 9.5662 0 0 0 0 0.21486 1 1011 1011 0 0 1 + 53777 23947 35627 35648 52624 52624 0.1471848773575175 WPMTLCLCFM 10 Unmodified _WPMTLCLCFM_ 0 0 0 ENST00000215882.9_1_22:19163372-19163516:-|nuORF ENST00000215882.9_1_22:19163372-19163516:-|nuORF ENST00000215882.9_1_22:19163372-19163516:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7731323242188 2 622.770376 1243.5262 NaN NaN NaN NaN NaN NaN NaN 128.19 1 123.45 122.95 123.95 -4.7408 0 0 0 0.22588 1 24664 24664 11.64 2.2572 1 53778 8100 35628 35649 52625 52625 -0.08582204110507519 WPPPPFCL 8 Unmodified _WPPPPFCL_ 0 0 0 REV__ENST00000563305.1_1_16:67472744-67473248:-|nuORF REV__ENST00000563305.1_1_16:67472744-67473248:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7371520996094 2 478.738574 955.462595 NaN NaN NaN NaN NaN NaN NaN 159.28 1 159.28 158.78 159.78 0 0 0 0 0.23711 1 31978 31978 0.12286 0 1 + 53779 23075 35629 35650 52626 52626 -0.01691737169426233 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3618774414062 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 51.631 1 51.631 51.131 52.131 0 0 0 0 0.22632 1 9801 9801 0 0 1 53780 25641 35630 35651 52627 52627 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3618774414062 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 51.657 1 51.657 51.157 52.157 0 0 0 0 0.23698 1 9806 9806 0.30703 0.30703 1 53781 25641 35630 35651 52628 52628 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3621826171875 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 131.07 1 131.07 130.57 131.57 0 0 0 0 0.22632 1 25913 25913 0 0 1 53782 25641 35630 35651 52629 52629 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3621826171875 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 159.04 1 159.04 158.54 159.54 0 0 0 0 0.22632 1 31935 31935 0 0 1 53783 25641 35630 35651 52630 52630 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.362060546875 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 178.65 1 178.65 178.15 179.15 0 0 0 0 0.22632 1 37007 37007 0 0 1 53784 25641 35630 35651 52631 52631 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3616943359375 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 60.326 1 57.393 56.893 57.893 -2.9333 0 0 0 0.22632 1 11607 11607 0 0 1 53785 25641 35630 35651 52632 52632 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3621215820312 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 67.4 1 64.292 63.792 64.792 -3.1086 0 0 0 0.23698 1 13072 13072 0 0 1 53786 25641 35630 35651 52633 52633 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3616943359375 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 136.37 1 131.73 131.23 132.23 -4.6399 0 0 0 0.22632 1 26909 26909 0 0 1 53787 25641 35630 35651 52634 52634 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3638916015625 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 154.4 1 149.63 149.13 150.13 -4.7684 0 0 0 0.22632 1 30689 30689 0 0 1 53788 25641 35630 35651 52635 52635 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.361328125 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 155.17 1 150.39 149.89 150.89 -4.7791 0 0 0 0.22632 1 30845 30845 0 0 1 53789 25641 35630 35651 52636 52636 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2716064453125 3 541.243434 1620.70847 NaN NaN NaN NaN NaN NaN NaN 77.565 1 73.799 73.299 74.299 -3.7664 0 0 0 0.22632 1 14695 14695 0.50596 0.41111 1 53790 25641 35630 35651 52637 52637 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3615112304688 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 91.641 1 87.547 87.047 88.047 -4.0946 0 0 0 0.22632 1 17455 17455 0 0 1 53791 25641 35630 35651 52638 52638 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.363037109375 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 22.897 1 21.108 20.608 21.608 -1.7886 0 0 0 0.22632 1 3658 3658 0.094841 0.087559 1 53792 25641 35630 35651 52639 52639 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3616333007812 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 37.992 1 35.654 35.154 36.154 -2.3375 0 0 0 0.22632 1 6743 6743 0 0 1 53793 25641 35630 35651 52640 52640 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3617553710938 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 115.39 1 111.08 110.58 111.58 -4.3136 0 0 0 0.22632 1 22214 22214 0 0 1 53794 25641 35630 35651 52641 52641 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3615112304688 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 125.24 1 120.59 120.09 121.09 -4.6495 0 0 0 0.22632 1 24096 24096 0 0 1 53795 25641 35630 35651 52642 52642 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3615112304688 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 125.27 1 120.62 120.12 121.12 -4.6495 0 0 0 0.23698 1 24100 24100 0 0 1 53796 25641 35630 35651 52643 52643 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3614501953125 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 132.96 1 128.16 127.66 128.66 -4.799 0 0 0 0.22632 1 25592 25592 0 0 1 53797 25641 35630 35651 52644 52644 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3614501953125 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 132.99 1 128.19 127.69 128.69 -4.799 0 0 0 0.23698 1 25595 25595 0 0 1 53798 25641 35630 35651 52645 52645 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3619384765625 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 154.57 1 149.32 148.82 149.82 -5.2526 0 0 0 0.22632 1 29971 29971 0 0 1 53799 25641 35630 35651 52646 52646 -0.0770526905753286 WPRWYMHDFFH 11 Unmodified _WPRWYMHDFFH_ 0 0 0 SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant SCN10A|p.H831Y|1|0.14|ENSG00000185313|chr3:38728691-38728691|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3621215820312 2 811.361513 1620.70847 NaN NaN NaN NaN NaN NaN NaN 157.51 1 152.24 151.74 152.74 -5.2712 0 0 0 0.22632 1 30554 30554 0 0 1 53800 25641 35630 35651 52647 52647 -0.0770526905753286 WPVWFALF 8 Unmodified _WPVWFALF_ 0 0 0 REV__ENSG00000138111|ENST00000238936|MFSD13A REV__ENSG00000138111|ENST00000238936|MFSD13A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2699584960938 2 533.281463 1064.54837 NaN NaN NaN NaN NaN NaN NaN 42.799 1 42.799 42.299 43.299 0 0 0 0 0.2396 1 8012 8012 0.0082765 0 1 + 53801 16439 35631 35652 52648 52648 0.018681710077316893 WPWRRRKKRVP 11 Unmodified _WPWRRRKKRVP_ 0 0 0 MICAL1|p.T754Qfs*150|1|0.53|ENSG00000135596|chr6:109446741-109446741|C/-|frameshift_variant;ENST00000456101.6_1_6:109766698-109772967:-|nuORF MICAL1|p.T754Qfs*150|1|0.53|ENSG00000135596|chr6:109446741-109446741|C/-|frameshift_variant MICAL1|p.T754Qfs*150|1|0.53|ENSG00000135596|chr6:109446741-109446741|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.257080078125 3 522.319777 1563.9375 0.43596 0.00022771 -3.4762 -0.0018157 -3.0402 -0.001588 522.3192333456723 119.81 0.20902 115.34 115.19 115.4 -4.467 8 5 2 0 0 0 0.96227 1 23047 23047 0 0 1 506220 53802 12147 35632 35653 52649 52649 0.17809111021347235 WQAQSFRSQLQ 11 Unmodified _WQAQSFRSQLQ_ 0 0 0 nc|ENSG00000175267|A6NCI4-2|VWA3A;ENSG00000175267|ENST00000389398|VWA3A;nc|ENSG00000175267|A6NCI4-3|VWA3A;nc|ENSG00000175267|A6NCI4-4|VWA3A nc|ENSG00000175267|A6NCI4-2|VWA3A nc|ENSG00000175267|A6NCI4-2|VWA3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2325744628906 3 460.233592 1377.67895 NaN NaN NaN NaN NaN NaN NaN 92.815 1 92.815 92.315 93.315 0 0 0 0 0.22632 1 18150 18150 5.4027 4.8174 1 53803 6397 35633 35654 52650 52650 0.005214901980025388 WQCDTFNDCE 10 Unmodified _WQCDTFNDCE_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7674560546875 2 630.718438 1259.42232 NaN NaN NaN NaN NaN NaN NaN 8.5487 1 7.7545 7.2545 8.2545 -0.79424 0 0 0 2.8426 1 899 899 0 0 1 53804 1627 35634 35655 52651 52651 -0.19701116412829833 WQDLFRIV 8 Unmodified _WQDLFRIV_ 0 0 0 ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000124198|ENST00000371917|ARFGEF2 ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2022705078125 3 359.534431 1075.58147 -0.57706 -0.00020747 -0.58775 -0.00021132 -1.1648 -0.00041879 359.53436367715295 67.661 0.91178 67.661 67.124 68.035 0 48 25 3 0 0 0 0.73402 1 13035 13035 9.3831 3.1773 1 2768600 53805 197;3298 35635 35656 52652 52652 0.04669753059783943 WQDRHEIGY 9 Unmodified _WQDRHEIGY_ 0 0 0 REV__ENSG00000186918|ENST00000344423|ZNF395 REV__ENSG00000186918|ENST00000344423|ZNF395 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2817993164062 2 602.280712 1202.54687 NaN NaN NaN NaN NaN NaN NaN 98.927 1 94.971 94.471 95.471 -3.9564 0 0 0 0.19636 1 18988 18988 2.4985 2.2331 1 + 53806 19065 35636 35657 52653 52653 -0.04630114818974107 WQEAGGPNG 9 Unmodified _WQEAGGPNG_ 0 0 0 ENST00000407721.6_1_11:71155939-71158746:-|nuORF ENST00000407721.6_1_11:71155939-71158746:-|nuORF ENST00000407721.6_1_11:71155939-71158746:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23834228515625 2 458.201399 914.388245 NaN NaN NaN NaN NaN NaN NaN 72.966 1 72.966 72.466 73.466 0 0 0 0 0.23508 1 14159 14159 10.824 1.4408 1 53807 9553 35637 35658 52654 52654 -0.07237408727223738 WQFKMQEPMAS 11 Unmodified _WQFKMQEPMAS_ 0 0 0 REV__PRSS23|p.D303Tfs*17|1|0.14|ENSG00000150687|chr11:86808549-86808558|TGACTTGCTC/-|frameshift_variant REV__PRSS23|p.D303Tfs*17|1|0.14|ENSG00000150687|chr11:86808549-86808558|TGACTTGCTC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5447998046875 3 461.545902 1381.61588 NaN NaN NaN NaN NaN NaN NaN 161.38 1 156.15 155.65 156.65 -5.2299 0 0 0 0.23698 1 31341 31341 1.2148 0 1 + 53808 17042 35638 35659 52655 52655 -0.05966534905928711 WQFRKKYHHHR 11 Unmodified _WQFRKKYHHHR_ 0 0 0 REV__nc|ENSG00000108375|Q68DV7-3|RNF43 REV__nc|ENSG00000108375|Q68DV7-3|RNF43 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2669677734375 3 541.623637 1621.84908 0.31715 0.00017178 -0.5349 -0.00028972 -0.21775 -0.00011794 541.956812036337 144.05 0.1021 144.05 143.97 144.07 0 4 2 2 0 0 0 0.89122 1 28754 28754 0.50596 0.41111 1 1518000 + 53809 13420 35639 35660 52656 52656 0.06303070710919201 WQFRKKYHHHR 11 Unmodified _WQFRKKYHHHR_ 0 0 0 REV__nc|ENSG00000108375|Q68DV7-3|RNF43 REV__nc|ENSG00000108375|Q68DV7-3|RNF43 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2718505859375 3 541.623637 1621.84908 -0.10009 -5.4211E-05 -0.9304 -0.00050393 -1.0305 -0.00055814 541.6229966481877 16.922 0.10528 15.706 15.636 15.741 -1.2159 4 2 2 0 0 0 0.96227 1 2680 2680 0.08335 0.08335 1 221570 + 53810 13420 35639 35660 52657 52657 0.06303070710919201 WQGYLRYRHQY 11 Unmodified _WQGYLRYRHQY_ 0 0 0 REV__ENSG00000125676|ENST00000245838|THOC2 REV__ENSG00000125676|ENST00000245838|THOC2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6820068359375 3 523.928503 1568.76368 NaN NaN NaN NaN NaN NaN NaN 12.879 1 11.758 11.258 12.258 -1.1206 0 0 0 0.23698 1 1575 1575 0.08335 0 1 + 53811 15822 35640 35661 52658 52658 0.0020486073458414467 WQHDEPCY 8 Unmodified _WQHDEPCY_ 0 0 0 ENSG00000074071|ENST00000397375|MRPS34 ENSG00000074071|ENST00000397375|MRPS34 ENSG00000074071|ENST00000397375|MRPS34 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2018127441406 3 359.808003 1076.40218 0.24979 8.9876E-05 -1.5464 -0.00055642 -1.2966 -0.00046654 360.14243906880245 126.71 0.70796 121.92 121.67 122.38 -4.7958 27 19 2 0 0 0 1.0248 1 24323 24323 6.7232 4.4404 1 1696400 53812 1492 35641 35662 52659 52659 -0.13296499290458996 WQKHFSSIVNQ 11 Unmodified _WQKHFSSIVNQ_ 0 0 0 REV__ENSG00000132911|ENST00000255262|NMUR2 REV__ENSG00000132911|ENST00000255262|NMUR2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 459.2395324707031 3 458.570204 1372.68878 -0.25751 -0.00011809 -0.28874 -0.00013241 -0.54625 -0.0002505 458.5699098170426 56.144 0.579 53.25 52.966 53.545 -2.8944 41 16 3 0 0 0 0.54604 1 10723 10723 8.4443 5.8131 1 10178000 + 53813 16140 35642 35663 52660 52660 0.017346782033655472 WQKHFSSIVNQ 11 Unmodified _WQKHFSSIVNQ_ 0 0 0 REV__ENSG00000132911|ENST00000255262|NMUR2 REV__ENSG00000132911|ENST00000255262|NMUR2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 458.570204 1372.68878 0.27098 0.00012426 -0.81466 -0.00037358 -0.54368 -0.00024932 458.5696298598354 53.168 0.56813 53.168 52.82 53.389 0 -0.11144 -0.00026084 NaN 8.4443 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 7835100 + 53814 16140 35642 35663 0.017346782033655472 WQKHFSSIVNQ 11 Unmodified _WQKHFSSIVNQ_ 0 0 0 REV__ENSG00000132911|ENST00000255262|NMUR2 REV__ENSG00000132911|ENST00000255262|NMUR2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 458.570204 1372.68878 -0.25751 -0.00011809 -0.28874 -0.00013241 -0.54625 -0.0002505 458.5699098170426 56.144 0.579 53.25 52.966 53.545 -2.8944 -0.029371 0.00046267 NaN 8.4443 41 16 3 NaN NaN NaN NaN 0 NaN NaN 0 10178000 + 53815 16140 35642 35663 0.017346782033655472 WQKLLETGVWI 11 Unmodified _WQKLLETGVWI_ 0 0 0 SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant;ENSG00000108576|ENST00000650711|SLC6A4;nc|ENSG00000108576|P31645-2|SLC6A4 SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23175048828125 3 458.258967 1371.75507 NaN NaN NaN NaN NaN NaN NaN 131.31 1 126.47 125.97 126.97 -4.8355 0 0 0 0.22632 1 25217 25217 3.0723 2.4869 1 53816 2485 35643 35664 52661 52661 0.08406494045448198 WQKMVTAV 8 Unmodified _WQKMVTAV_ 0 0 0 HBG1|p.S130F|1|0.4|ENSG00000213934|chr11:5248414-5248414|G/A|missense_variant;ENSG00000213934|ENST00000330597|HBG1 HBG1|p.S130F|1|0.4|ENSG00000213934|chr11:5248414-5248414|G/A|missense_variant HBG1|p.S130F|1|0.4|ENSG00000213934|chr11:5248414-5248414|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.25469970703125 2 481.760038 961.505523 1.2233 0.00058936 0.7146 0.00034427 1.9379 0.00093363 481.7603621766377 25.839 0.44726 24.191 24 24.447 -1.6482 35 12 4 0 0 0 0.66066 1 4518 4518 36.044 36.044 1 6652400 53817 7710 35644 35665 52662 52662 0.023230328880117668 WQKRLQEV 8 Unmodified _WQKRLQEV_ 0 0 0 REV__ENST00000473039.5_1_9:126143713-126520026:-|nuORF REV__ENST00000473039.5_1_9:126143713-126520026:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7798461914062 2 543.806365 1085.59818 0.33749 0.00018353 -0.18673 -0.00010155 0.15076 8.1983E-05 543.8059183272659 151.36 0.42015 146.61 146.36 146.78 -4.7523 17 11 2 0 0 0 8448 1 30104 30104 3.2813 0 1 1562800 + 53818 15582 35645 35666 52663 52663 0.05880253945747427 WQKRLQEV 8 Unmodified _WQKRLQEV_ 0 0 0 REV__ENST00000473039.5_1_9:126143713-126520026:-|nuORF REV__ENST00000473039.5_1_9:126143713-126520026:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7822265625 2 543.806365 1085.59818 NaN NaN NaN NaN NaN NaN NaN 151.85 1 146.68 146.18 147.18 -5.1759 0 0 0 0.20462 1 29428 29428 21.747 0 1 + 53819 15582 35645 35666 52664 52664 0.05880253945747427 WQKSNSGL 8 Unmodified _WQKSNSGL_ 0 0 0 REV__RNF6|p.I681Sfs*7|1|0.29|ENSG00000127870|chr13:26213839-26213840|TA/-|frameshift_variant REV__RNF6|p.I681Sfs*7|1|0.29|ENSG00000127870|chr13:26213839-26213840|TA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.24407958984375 2 460.235242 918.45593 0.022414 1.0316E-05 0.562 0.00025865 0.58441 0.00026897 460.2354198351024 76.828 0.82706 73.061 72.505 73.332 -3.7664 39 23 2 0 0 0 8448 1 14551 14551 1.7423 0 1 1550800 + 53820 24573 35646 35667 52665 52665 -0.006559587964147795 WQLGGARR 8 Unmodified _WQLGGARR_ 0 0 0 REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.65985107421875 3 315.178871 942.514782 NaN NaN NaN NaN NaN NaN NaN 159.5 1 154.23 153.73 154.73 -5.2748 0 0 0 0.2386 1 30958 30958 0.30703 0.29875 1 + 53821 23050 35647 35668 52666 52666 0.04122562288557674 WQLQGYSVN 9 Unmodified _WQLQGYSVN_ 0 0 0 ENSG00000065060|ENST00000192788|BLTP3A ENSG00000065060|ENST00000192788|BLTP3A ENSG00000065060|ENST00000192788|BLTP3A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7691650390625 2 547.766906 1093.51926 NaN NaN NaN NaN NaN NaN NaN 126.2 1 126.2 125.7 126.7 0 0 0 0 0.23277 1 24905 24905 13.906 2.2658 1 53822 1351 35648 35669 52667 52667 -0.023760180791896346 WQMNFTVRY 9 Unmodified _WQMNFTVRY_ 0 0 0 ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2 ENSG00000005893|ENST00000200639|LAMP2 ENSG00000005893|ENST00000200639|LAMP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7643432617188 2 622.797683 1243.58081 NaN NaN NaN NaN NaN NaN NaN 71.164 1 67.697 67.197 68.197 -3.467 0 0 0 0.23508 1 13484 13484 4.756 0.22714 1 53823 1000 35649 35670 52668 52668 -0.031234096515618148 WQNEMIETE 9 Unmodified _WQNEMIETE_ 0 0 0 ENSG00000198873|ENST00000392870|GRK5 ENSG00000198873|ENST00000392870|GRK5 ENSG00000198873|ENST00000392870|GRK5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.25537109375 2 590.252971 1178.49139 NaN NaN NaN NaN NaN NaN NaN 61.856 1 58.617 58.117 59.117 -3.2395 0 0 0 0.1964 1 11585 11585 0.12781 0.098532 1 53824 7512 35650 35671 52669 52669 -0.09071709121576532 WQQELVKYRE 10 Unmodified _WQQELVKYRE_ 0 0 0 REV__nc|ENSG00000144357|Q6ZT12-3|UBR3 REV__nc|ENSG00000144357|Q6ZT12-3|UBR3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2421569824219 3 460.241976 1377.7041 NaN NaN NaN NaN NaN NaN NaN 132.27 1 132.27 131.77 132.77 0 0 0 0 2.8426 1 26148 26148 6.6304 1.2277 1 + 53825 16777 35651 35672 52670 52670 0.030355450005572493 WQQFVDSLKDL 11 Unmodified _WQQFVDSLKDL_ 0 0 0 REV__ENSG00000167291|ENST00000310924|TBC1D16 REV__ENSG00000167291|ENST00000310924|TBC1D16 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2381591796875 3 460.238232 1377.69287 NaN NaN NaN NaN NaN NaN NaN 106.6 1 102.34 101.84 102.84 -4.2638 0 0 0 0.22632 1 20985 20985 7.0341 5.6267 1 + 53826 17915 35652 35673 52671 52671 0.019127229064224593 WQQLDPDEKIT 11 Unmodified _WQQLDPDEKIT_ 0 0 0 nc|ENSG00000146587|Q9NYW8-2|RBAK;RBAK|p.F520Hfs*5|1|0.23|ENSG00000146587|chr7:5065012-5065013|-/TCACA|frameshift_variant;ENSG00000146587|ENST00000396912|RBAK nc|ENSG00000146587|Q9NYW8-2|RBAK nc|ENSG00000146587|Q9NYW8-2|RBAK MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22772216796875 3 458.229625 1371.66705 NaN NaN NaN NaN NaN NaN NaN 56.861 1 53.671 53.171 54.171 -3.1895 0 0 0 0.22632 1 10549 10549 1.4551 1.4289 1 53827 4662 35653 35674 52672 52672 -0.003921713358977286 WQRERWQIWEL 11 Unmodified _WQRERWQIWEL_ 0 0 0 nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF nc|ENSG00000047648|O43182-4|ARHGAP6 nc|ENSG00000047648|O43182-4|ARHGAP6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.38525390625 2 815.417874 1628.82119 NaN NaN NaN NaN NaN NaN NaN 171.18 1 166.39 165.89 166.89 -4.7898 0 0 0 0.23698 1 34787 34787 2.7352 2.4282 1 53828 1222 35654 35675 52673 52673 0.031937029401660766 WQRERWQIWEL 11 Unmodified _WQRERWQIWEL_ 0 0 0 nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF nc|ENSG00000047648|O43182-4|ARHGAP6 nc|ENSG00000047648|O43182-4|ARHGAP6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3756103515625 2 815.417874 1628.82119 NaN NaN NaN NaN NaN NaN NaN 172.28 1 167.38 166.88 167.88 -4.8977 0 0 0 0.23698 1 34166 34166 2.2828 0.95324 1 53829 1222 35654 35675 52674 52674 0.031937029401660766 WQRERWQIWEL 11 Unmodified _WQRERWQIWEL_ 0 0 0 nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF nc|ENSG00000047648|O43182-4|ARHGAP6 nc|ENSG00000047648|O43182-4|ARHGAP6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3525390625 2 815.417874 1628.82119 NaN NaN NaN NaN NaN NaN NaN 171.41 1 166.53 166.03 167.03 -4.873 0 0 0 0.23698 1 33968 33968 2.7352 1.5419 1 53830 1222 35654 35675 52675 52675 0.031937029401660766 WQRTYVEVVHQ 11 Unmodified _WQRTYVEVVHQ_ 0 0 0 PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;PTCH1|p.Y1316Tfs*56|3|0.29|ENSG00000185920|chr9:95447311-95447311|G/-|frameshift_variant;PTCH1|p.R1308Efs*64|1|0.24|ENSG00000185920|chr9:95447335-95447335|G/-|frameshift_variant;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;PTCH1|p.P593Lfs*30|1|0.34|ENSG00000185920|chr9:95469884-95469884|A/-|frameshift_variant PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7828674316406 3 482.249242 1443.7259 NaN NaN NaN NaN NaN NaN NaN 19.947 1 19.947 19.447 20.447 0 0 0 0 0.22632 1 3283 3283 0.00056442 0 1 53831 7019 35655 35676 52676 52676 0.021783497491242088 WQRWSDWFRVR 11 Unmodified _WQRWSDWFRVR_ 0 0 0 REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.276611328125 3 541.276014 1620.80621 NaN NaN NaN NaN NaN NaN NaN 82.908 1 82.908 82.408 83.408 0 0 0 0 0.22632 1 16161 16161 1.4551 0.94916 1 + 53832 20418 35656 35677 52677 52677 0.020642558627969265 WQRWSDWFRVR 11 Unmodified _WQRWSDWFRVR_ 0 0 0 REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2776489257812 3 541.276014 1620.80621 NaN NaN NaN NaN NaN NaN NaN 127.02 1 127.02 126.52 127.52 0 0 0 0 0.22632 1 25071 25071 1.4551 0.8698 1 + 53833 20418 35656 35677 52678 52678 0.020642558627969265 WQRWSDWFRVR 11 Unmodified _WQRWSDWFRVR_ 0 0 0 REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2742309570312 3 541.276014 1620.80621 NaN NaN NaN NaN NaN NaN NaN 42.768 1 40.049 39.549 40.549 -2.7191 0 0 0 0.22632 1 8006 8006 0.094841 0.087559 1 + 53834 20418 35656 35677 52679 52679 0.020642558627969265 WQRWSDWFRVR 11 Unmodified _WQRWSDWFRVR_ 0 0 0 REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2774658203125 3 541.276014 1620.80621 NaN NaN NaN NaN NaN NaN NaN 79.86 1 76.349 75.849 76.849 -3.5102 0 0 0 0.22632 1 15596 15596 0 0 1 + 53835 20418 35656 35677 52680 52680 0.020642558627969265 WQRWSDWFRVR 11 Unmodified _WQRWSDWFRVR_ 0 0 0 REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2650756835938 3 541.276014 1620.80621 NaN NaN NaN NaN NaN NaN NaN 151.21 1 145.97 145.47 146.47 -5.2365 0 0 0 0.22632 1 29307 29307 0.58532 0.55911 1 + 53836 20418 35656 35677 52681 52681 0.020642558627969265 WQRWSDWFRVR 11 Unmodified _WQRWSDWFRVR_ 0 0 0 REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2769165039062 3 541.276014 1620.80621 NaN NaN NaN NaN NaN NaN NaN 174.73 1 169.85 169.35 170.35 -4.8845 0 0 0 0.22632 1 34722 34722 0 0 1 + 53837 20418 35656 35677 52682 52682 0.020642558627969265 WQRWSDWFRVR 11 Unmodified _WQRWSDWFRVR_ 0 0 0 REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF REV__ENST00000303319.9_1_2:150444183-150444282:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2759399414062 3 541.276014 1620.80621 NaN NaN NaN NaN NaN NaN NaN 52.328 1 49.233 48.733 49.733 -3.0954 0 0 0 0.22632 1 9656 9656 0.6275 0.60129 1 + 53838 20418 35656 35677 52683 52683 0.020642558627969265 WQVNWRRR 8 Unmodified _WQVNWRRR_ 0 0 0 ENST00000546876.1_1_12:114395740-114397707:-|nuORF ENST00000546876.1_1_12:114395740-114397707:-|nuORF ENST00000546876.1_1_12:114395740-114397707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 600.8284912109375 2 600.828498 1199.64244 NaN NaN NaN NaN NaN NaN NaN 11.615 1 10.549 10.049 11.049 -1.0664 0 0 0 0.21486 1 1332 1332 0 0 1 53839 11135 35657 35678 52684 52684 0.05060702882587975 WQWCSDESY 9 Unmodified _WQWCSDESY_ 0 0 0 REV__nc|ENSG00000174226|Q8N9S9-2|SNX31 REV__nc|ENSG00000174226|Q8N9S9-2|SNX31 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2947387695312 2 602.224214 1202.43387 1.2758 0.00076833 0.9062 0.00054574 2.182 0.0013141 602.2250927275525 20.254 0.17298 18.857 18.723 18.896 -1.3966 7 4 2 0 0 0 0.87741 1 3377 3377 6.2058 0.9089 1 169890 + 53840 18400 35658 35679 52685 52685 -0.1592455132717987 WQWKMRSG 8 Unmodified _WQWKMRSG_ 0 0 0 ENST00000441189.3_1_X:41193512-41196673:+|nuORF ENST00000441189.3_1_X:41193512-41196673:+|nuORF ENST00000441189.3_1_X:41193512-41196673:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2015686035156 3 360.179883 1077.51782 NaN NaN NaN NaN NaN NaN NaN 8.9719 1 7.9373 7.4373 8.4373 -1.0347 0 0 0 0.21486 1 880 880 0.40072 0.1317 1 53841 9890 35659 35680 52686 52686 -0.017839306489349838 WQWRRREVQWR 11 Unmodified _WQWRRREVQWR_ 0 0 0 REV__ENST00000508390.1_1_3:131245302-131245881:+|nuORF REV__ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3956909179688 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 173.85 1 173.85 173.35 174.35 0 0 0 0 0.22632 1 35967 35967 0 0 1 + 53842 22511 35660 35681 52687 52687 0.06606438394032921 WQWRRREVQWR 11 Unmodified _WQWRRREVQWR_ 0 0 0 REV__ENST00000508390.1_1_3:131245302-131245881:+|nuORF REV__ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.401123046875 2 843.447831 1684.88111 NaN NaN NaN NaN NaN NaN NaN 164.38 1 159.34 158.84 159.84 -5.0446 0 0 0 0.22632 1 32053 32053 0 0 1 + 53843 22511 35660 35681 52688 52688 0.06606438394032921 WQYDVWSHDVT 11 Unmodified _WQYDVWSHDVT_ 0 0 0 nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2;ADCY2|p.R914Sfs*9|1|0.46|ENSG00000078295|chr5:7802326-7802327|-/T|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4;ENST00000545213.5_1_14:24798022-24799232:-|nuORF;ENST00000557056.5_1_14:24792528-24800258:-|nuORF;nc|ENSG00000129467|Q8NFM4-2|ADCY4;ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ADCY4|p.R528Gfs*3|1|0.38|ENSG00000129467|chr14:24326152-24326152|G/-|frameshift_variant nc|ENSG00000078295|Q08462-2|ADCY2 nc|ENSG00000078295|Q08462-2|ADCY2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7347717285156 3 479.214086 1434.62043 NaN NaN NaN NaN NaN NaN NaN 109.05 1 109.05 108.55 109.55 0 0 0 0 0.22632 1 21441 21441 0.03141 0.0052036 1 53844 1576 35661 35682 52689 52689 -0.07949611167168769 WQYFFFQMRYN 11 Unmodified _WQYFFFQMRYN_ 0 0 0 REV__ENST00000368324.4_1_1:155852837-155852948:+|nuORF REV__ENST00000368324.4_1_1:155852837-155852948:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3720703125 2 815.369004 1628.72345 NaN NaN NaN NaN NaN NaN NaN 126.73 1 126.73 126.23 127.23 0 0 0 0 0.22632 1 25011 25011 0.026206 0 1 + 53845 20937 35662 35683 52690 52690 -0.06575821980186447 WQYFFFQMRYN 11 Unmodified _WQYFFFQMRYN_ 0 0 0 REV__ENST00000368324.4_1_1:155852837-155852948:+|nuORF REV__ENST00000368324.4_1_1:155852837-155852948:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3712158203125 2 815.369004 1628.72345 NaN NaN NaN NaN NaN NaN NaN 83.459 1 79.851 79.351 80.351 -3.6079 0 0 0 0.22632 1 16316 16316 0.094841 0 1 + 53846 20937 35662 35683 52691 52691 -0.06575821980186447 WQYQLRYERDI 11 Unmodified _WQYQLRYERDI_ 0 0 0 TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.39599609375 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 117.91 1 113.4 112.9 113.9 -4.502 0 0 0 0.22632 1 23244 23244 1.4551 0 1 53847 25817 35663 35684 52692 52692 0.011940039493083532 WQYQLRYERDI 11 Unmodified _WQYQLRYERDI_ 0 0 0 TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.394287109375 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 118.12 1 113.62 113.12 114.12 -4.502 0 0 0 0.22632 1 23285 23285 5.4027 5.2307 1 53848 25817 35663 35684 52693 52693 0.011940039493083532 WQYQLRYERDI 11 Unmodified _WQYQLRYERDI_ 0 0 0 TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3919677734375 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 118.6 1 113.99 113.49 114.49 -4.6106 0 0 0 0.22632 1 22758 22758 1.4551 0 1 53849 25817 35663 35684 52694 52694 0.011940039493083532 WQYQLRYERDI 11 Unmodified _WQYQLRYERDI_ 0 0 0 TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3946533203125 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 118.81 1 114.2 113.7 114.7 -4.6106 0 0 0 0.22632 1 22800 22800 1.4551 0.94916 1 53850 25817 35663 35684 52695 52695 0.011940039493083532 WQYQLRYERDI 11 Unmodified _WQYQLRYERDI_ 0 0 0 TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant TAF2|p.V659I|1|0.29|ENSG00000064313|chr8:119783518-119783518|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3955688476562 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 122.73 1 118 117.5 118.5 -4.731 0 0 0 0.22632 1 23573 23573 0.58532 0.58475 1 53851 25817 35663 35684 52696 52696 0.011940039493083532 WRAMRIKRPIR 11 Unmodified _WRAMRIKRPIR_ 0 0 0 ENST00000367511.3_1_1:184859295-184863243:-|nuORF ENST00000367511.3_1_1:184859295-184863243:-|nuORF ENST00000367511.3_1_1:184859295-184863243:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3849487304688 2 741.951164 1481.88777 NaN NaN NaN NaN NaN NaN NaN 155.8 1 151.02 150.52 151.52 -4.7791 0 0 0 0.22632 1 30972 30972 0 0 1 53852 9072 35664 35685 52697 52697 0.16610660021069634 WRARYYYHRL 10 Unmodified _WRARYYYHRL_ 0 0 0 REV__ENSG00000181523|ENST00000326317|SGSH REV__ENSG00000181523|ENST00000326317|SGSH MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3899536132812 2 742.388919 1482.76329 NaN NaN NaN NaN NaN NaN NaN 46.959 1 44.017 43.517 44.517 -2.9421 0 0 0 2.8426 1 8548 8548 0.0013812 0.0008168 1 + 53853 18733 35665 35686 52698 52698 0.04121485805399061 WRCHNRQRTQV 11 Unmodified _WRCHNRQRTQV_ 0 0 0 REV__ENST00000342992.10_3_2:179400845-179400926:-|nuORF REV__ENST00000342992.10_3_2:179400845-179400926:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3751831054688 2 742.376017 1482.73748 NaN NaN NaN NaN NaN NaN NaN 104.54 1 100.2 99.698 100.7 -4.346 0 0 0 0.22632 1 20028 20028 0.00056442 0 1 + 53854 20726 35666 35687 52699 52699 0.015422682914731922 WRDRIRRRQLN 11 Unmodified _WRDRIRRRQLN_ 0 0 0 ENST00000606385.1_1_6:25016058-25042154:-|nuORF ENST00000606385.1_1_6:25016058-25042154:-|nuORF ENST00000606385.1_1_6:25016058-25042154:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3894653320312 2 784.953281 1567.89201 NaN NaN NaN NaN NaN NaN NaN 177.88 1 173.01 172.51 173.51 -4.8686 0 0 0 0.22632 1 35403 35403 0 0 1 53855 11745 35667 35688 52700 52700 0.13077840768346505 WRDRWEQFDKK 11 Unmodified _WRDRWEQFDKK_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5;ENST00000564704.5_1_16:67289660-67296168:+|nuORF ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 531.85693359375 3 531.935546 1592.78481 NaN NaN NaN NaN NaN NaN NaN 164.4 1 159.61 159.11 160.11 -4.7898 0 0 0 0.22632 1 32855 32855 0.50596 0 1 53856 3947 35668 35689 52701 52701 0.01212826043433779 WRERWQEYFTF 11 Unmodified _WRERWQEYFTF_ 0 0 0 ENST00000367103.3_1_1:206907394-206907589:+|nuORF ENST00000367103.3_1_1:206907394-206907589:+|nuORF ENST00000367103.3_1_1:206907394-206907589:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 824.3884887695312 2 824.388782 1646.76301 NaN NaN NaN NaN NaN NaN NaN 54.554 1 51.416 50.916 51.916 -3.1377 0 0 0 0.23698 1 10099 10099 0 0 1 53857 9058 35669 35690 52702 52702 -0.034499787051345265 WRERWWSRHRS 11 Unmodified _WRERWWSRHRS_ 0 0 0 REV__ENST00000466885.5_1_20:61872851-61879872:-|nuORF REV__ENST00000466885.5_1_20:61872851-61879872:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7827758789062 3 547.94678 1640.81851 NaN NaN NaN NaN NaN NaN NaN 22.324 1 20.85 20.35 21.35 -1.4742 0 0 0 0.22632 1 3811 3811 0.094841 0 1 + 53858 14768 35670 35691 52703 52703 0.023732923258648952 WRFARVVRDTY 11 Unmodified _WRFARVVRDTY_ 0 0 0 REV__ENSG00000111203|ENST00000228799|ITFG2 REV__ENSG00000111203|ENST00000228799|ITFG2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2648010253906 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 48.697 1 45.698 45.198 46.198 -2.999 0 0 0 0.22632 1 8892 8892 0.026206 0 1 + 53859 15232 35671 35692 52704 52704 0.0583404873998461 WRFARVVRDTY 11 Unmodified _WRFARVVRDTY_ 0 0 0 REV__ENSG00000111203|ENST00000228799|ITFG2 REV__ENSG00000111203|ENST00000228799|ITFG2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2580261230469 3 490.265115 1467.77352 NaN NaN NaN NaN NaN NaN NaN 46.873 1 44.006 43.506 44.506 -2.8666 0 0 0 0.22632 1 8542 8542 7.0341 5.6267 1 + 53860 15232 35671 35692 52705 52705 0.0583404873998461 WRFIRNWQRWH 11 Unmodified _WRFIRNWQRWH_ 0 0 0 REV__CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant REV__CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4172973632812 2 842.939642 1683.86473 0.50555 0.00042615 -2.5024 -0.0021094 -1.9969 -0.0016833 842.9359725133642 174.24 0.10814 174.24 174.17 174.27 0 4 2 2 0 0 0 0.82733 1 36067 36067 0 0 1 6554700 + 53861 13238 35672 35693 52706 52706 0.050153572279441505 WRFIRNWQRWH 11 Unmodified _WRFIRNWQRWH_ 0 0 0 REV__CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant REV__CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3942260742188 2 842.939642 1683.86473 NaN NaN NaN NaN NaN NaN NaN 164.65 1 159.86 159.36 160.36 -4.7898 0 0 0 0.23698 1 32915 32915 0.30703 0 1 + 53862 13238 35672 35693 52707 52707 0.050153572279441505 WRFKPISR 8 Unmodified _WRFKPISR_ 0 0 0 tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1 tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1 tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 545.3132934570312 2 545.319443 1088.62433 NaN NaN NaN NaN NaN NaN NaN 150.09 1 144.89 144.39 145.39 -5.1994 0 0 0 0.21486 1 29080 29080 9.3831 1.2276 1 53863 26040 35673 35694 52708 52708 0.08356567907890167 WRFLWNFPQIY 11 Unmodified _WRFLWNFPQIY_ 0 0 0 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4015502929688 2 785.403704 1568.79285 NaN NaN NaN NaN NaN NaN NaN 36.165 1 33.771 33.271 34.271 -2.3938 0 0 0 0.23698 1 6674 6674 0.30703 0.03801 1 53864 7743 35674 35695 52709 52709 0.031210050309027793 WRGEENQY 8 Unmodified _WRGEENQY_ 0 0 0 REV__CEP192|p.F750Sfs*4|1|0.45|ENSG00000101639|chr18:13049038-13049039|TT/-|frameshift_variant REV__CEP192|p.F750Sfs*4|1|0.45|ENSG00000101639|chr18:13049038-13049039|TT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2604370117188 2 541.238513 1080.46247 1.364 0.00073826 -1.08 -0.00058453 0.28404 0.00015373 541.237871994857 25.441 0.35036 23.793 23.58 23.931 -1.6482 15 9 2 0 0 0 0.96284 1 4431 4431 19.439 19.439 1 512690 + 53865 13378 35675 35696 52710 52710 -0.07454065635693041 WRGKRWWQC 9 Unmodified _WRGKRWWQC_ 0 0 0 ENST00000554594.1_1_14:73140759-73181199:-|nuORF ENST00000554594.1_1_14:73140759-73181199:-|nuORF ENST00000554594.1_1_14:73140759-73181199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 435.8763122558594 3 435.885581 1304.63491 NaN NaN NaN NaN NaN NaN NaN 10.669 1 9.5756 9.0756 10.076 -1.0936 0 0 0 0.23508 1 1226 1226 0 0 1 53866 11222 35676 35697 52711 52711 -0.005217727093395297 WRGRRKVL 8 Unmodified _WRGRRKVL_ 0 0 0 REV__ENSG00000171421|ENST00000505059|MRPL36 REV__ENSG00000171421|ENST00000505059|MRPL36 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 357.5606384277344 3 357.561315 1069.66212 -0.26854 -9.6019E-05 -0.93978 -0.00033603 -1.2083 -0.00043205 357.56088497940516 82.349 0.52635 78.763 78.417 78.943 -3.586 20 14 2 0 0 0 8448 1 16128 16128 3.2813 3.208 1 807680 + 53867 18221 35677 35698 52712 52712 0.13007078893360813 WRHRLMHCVGF 11 Unmodified _WRHRLMHCVGF_ 0 0 0 ENSG00000178177|ENST00000635767|LCORL;nc|ENSG00000178177|Q8N3X6-3|LCORL;nc|ENSG00000178177|Q8N3X6|LCORL ENSG00000178177|ENST00000635767|LCORL ENSG00000178177|ENST00000635767|LCORL MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2411804199219 3 481.241259 1440.70195 -0.2075 -9.9858E-05 1.1925 0.00057387 0.98498 0.00047401 481.2418697265487 70.244 0.91811 70.244 69.814 70.732 0 37 25 2 0 0 0 0.6587 1 13588 13588 0.026206 0 1 3028700 53868 6563 35678 35699 52713 52713 -0.0007748548991912685 WRILYKKTLWY 11 Unmodified _WRILYKKTLWY_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6859130859375 3 523.969528 1568.88676 NaN NaN NaN NaN NaN NaN NaN 54.315 1 54.315 53.815 54.815 0 0 0 0 0.22632 1 10356 10356 0.026206 0 1 53869 7385 35679 35700 52714 52714 0.12506724133163516 WRIQPFKLFWE 11 Unmodified _WRIQPFKLFWE_ 0 0 0 REV__nc|ENSG00000100336|Q9BPW4-3|APOL4 REV__nc|ENSG00000100336|Q9BPW4-3|APOL4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 775.4220581054688 2 775.419354 1548.82415 NaN NaN NaN NaN NaN NaN NaN 51.691 1 51.691 51.191 52.191 0 0 0 0 0.2367 1 9813 9813 2.9952 1.8019 1 + 53870 23968 35680 35701 52715 52715 0.07169578064963389 WRIYSYSYLFH 11 Unmodified _WRIYSYSYLFH_ 0 0 0 nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ADCY10|p.N1597Tfs*4|1|0.07|ENSG00000143199|chr1:167809721-167809721|T/-|frameshift_variant;ENSG00000143199|ENST00000367851|ADCY10;nc|ENSG00000143199|Q96PN6-3|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 511.7672424316406 3 512.254105 1533.74048 -0.2825 -0.00014471 -0.86407 -0.00044262 -1.1466 -0.00058734 512.2536949645796 115.04 0.85847 110.49 110.15 111.01 -4.555 38 23 3 0 0 0 0.89074 1 22119 22119 1.4551 1.4289 1 2436900 53871 70 35681 35702 52716 52716 -0.0050357810271179915 WRIYSYSYLFH 11 Unmodified _WRIYSYSYLFH_ 0 0 0 nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ADCY10|p.N1597Tfs*4|1|0.07|ENSG00000143199|chr1:167809721-167809721|T/-|frameshift_variant;ENSG00000143199|ENST00000367851|ADCY10;nc|ENSG00000143199|Q96PN6-3|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 512.254105 1533.74048 0.24232 0.00012413 -1.2719 -0.00065152 -1.0295 -0.00052739 512.253416195591 110.53 0.84218 110.53 110.29 111.14 0 0.012408 -0.0001503 NaN 1.4551 40 23 3 NaN NaN NaN NaN 0 NaN NaN 0 3072100 53872 70 35681 35702 -0.0050357810271179915 WRIYSYSYLFH 11 Unmodified _WRIYSYSYLFH_ 0 0 0 nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ADCY10|p.N1597Tfs*4|1|0.07|ENSG00000143199|chr1:167809721-167809721|T/-|frameshift_variant;ENSG00000143199|ENST00000367851|ADCY10;nc|ENSG00000143199|Q96PN6-3|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 512.254105 1533.74048 0.49459 0.00025336 -1.4106 -0.00072256 -0.91596 -0.00046921 512.5877764550792 114.84 0.769 110.53 110.1 110.87 -4.3136 0.011623 -0.00036343 NaN 1.4551 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2898000 53873 70 35681 35702 -0.0050357810271179915 WRKKKKRKRRK 11 Unmodified _WRKKKKRKRRK_ 0 0 0 REV__PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant REV__PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2792358398438 3 533.361976 1597.0641 NaN NaN NaN NaN NaN NaN NaN 13.969 1 12.796 12.296 13.296 -1.173 0 0 0 0.22632 1 1856 1856 0 0 1 + 53874 24460 35682 35703 52717 52717 0.28945037246489846 WRKQLTRV 8 Unmodified _WRKQLTRV_ 0 0 0 REV__ENST00000462680.5_1_1:153955646-153957199:-|nuORF REV__ENST00000462680.5_1_1:153955646-153957199:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7835693359375 2 543.830175 1085.6458 NaN NaN NaN NaN NaN NaN NaN 17.544 1 17.544 17.044 18.044 0 0 0 0 0.23899 1 2784 2784 1.3295 0 1 + 53875 21908 35683 35704 52718 52718 0.10639952936594455 WRKRRITRTRW 11 Unmodified _WRKRRITRTRW_ 0 0 0 REV__ENST00000399933.7_1_9:6007594-6007651:-|nuORF REV__ENST00000399933.7_1_9:6007594-6007651:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 538.9907836914062 3 538.99032 1613.94913 NaN NaN NaN NaN NaN NaN NaN 166.42 1 161.47 160.97 161.97 -4.9484 0 0 0 0.22632 1 32611 32611 0.094841 0.094277 1 + 53876 21350 35684 35705 52719 52719 0.16671308044692523 WRKRRRRQLWG 11 Unmodified _WRKRRRRQLWG_ 0 0 0 REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2672119140625 3 533.318548 1596.93381 NaN NaN NaN NaN NaN NaN NaN 150.64 1 150.64 150.14 151.14 0 0 0 0 0.22632 1 30162 30162 0.2986 0.27239 1 + 53877 22861 35685 35706 52720 52720 0.1592244124753961 WRKRRRRQLWG 11 Unmodified _WRKRRRRQLWG_ 0 0 0 REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF REV__ENST00000540691.5_2_19:18671277-18672912:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2753295898438 3 533.318548 1596.93381 NaN NaN NaN NaN NaN NaN NaN 162.16 1 157.01 156.51 157.51 -5.1438 0 0 0 0.22632 1 31499 31499 0.026206 0 1 + 53878 22861 35685 35706 52721 52721 0.1592244124753961 WRKRWFILRRG 11 Unmodified _WRKRWFILRRG_ 0 0 0 nc|ENSG00000215568|Q2WGN9|GAB4 nc|ENSG00000215568|Q2WGN9|GAB4 nc|ENSG00000215568|Q2WGN9|GAB4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 525.3178100585938 3 525.316144 1572.9266 NaN NaN NaN NaN NaN NaN NaN 166.49 1 161.7 161.2 162.2 -4.7898 0 0 0 0.22632 1 33456 33456 0.50596 0.27741 1 53879 12596 35686 35707 52722 52722 0.16305708647087158 WRLLYIPY 8 Unmodified _WRLLYIPY_ 0 0 0 REV__ENST00000362042.7_1_17:46137096-46137213:+|nuORF REV__ENST00000362042.7_1_17:46137096-46137213:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.214599609375 3 375.21481 1122.6226 NaN NaN NaN NaN NaN NaN NaN 175.8 1 170.93 170.43 171.43 -4.8739 0 0 0 0.21486 1 34961 34961 0.45834 0 1 + 53880 20895 35687 35708 52723 52723 0.06619514099270418 WRLNKRWHLFI 11 Unmodified _WRLNKRWHLFI_ 0 0 0 REV__TEX38|p.R44W|1|0.4|ENSG00000186118|chr1:46672965-46672965|C/T|missense_variant REV__TEX38|p.R44W|1|0.4|ENSG00000186118|chr1:46672965-46672965|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6967163085938 3 523.636883 1567.88882 NaN NaN NaN NaN NaN NaN NaN 119.43 1 114.79 114.29 115.29 -4.645 0 0 0 0.22632 1 22923 22923 0.026206 0 1 + 53881 24788 35688 35709 52724 52724 0.12759197661648614 WRLNKRWHLFI 11 Unmodified _WRLNKRWHLFI_ 0 0 0 REV__TEX38|p.R44W|1|0.4|ENSG00000186118|chr1:46672965-46672965|C/T|missense_variant REV__TEX38|p.R44W|1|0.4|ENSG00000186118|chr1:46672965-46672965|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6815795898438 3 523.636883 1567.88882 NaN NaN NaN NaN NaN NaN NaN 133.09 1 128.23 127.73 128.73 -4.8527 0 0 0 0.23698 1 25565 25565 0.50596 0.051438 1 + 53882 24788 35688 35709 52725 52725 0.12759197661648614 WRLRKNFFYFY 11 Unmodified _WRLRKNFFYFY_ 0 0 0 ENSG00000184785|ENST00000330288|SMIM10 ENSG00000184785|ENST00000330288|SMIM10 ENSG00000184785|ENST00000330288|SMIM10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7929077148438 3 547.289261 1638.84595 0.46702 0.0002556 -0.19639 -0.00010748 0.27063 0.00014811 547.6231198054323 154.33 0.13252 149.11 149.04 149.18 -5.2209 5 3 2 0 0 0 0.96227 1 29924 29924 0.094841 0 1 637690 53883 6935 35689 35710 52726 52726 0.05208382813566459 WRLSEPELG 9 Unmodified _WRLSEPELG_ 0 0 0 ENSG00000265763|ENST00000585316|ZNF488 ENSG00000265763|ENST00000585316|ZNF488 ENSG00000265763|ENST00000585316|ZNF488 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.78271484375 2 543.782556 1085.55056 0.36768 0.00019994 -0.20694 -0.00011253 0.16074 8.7405E-05 543.782323939369 90.508 0.77071 86.463 86.021 86.792 -4.0443 48 21 3 0 0 0 0.42842 1 17235 17235 0.12781 0 1 4689600 53884 7978 35690 35711 52727 52727 0.011205549548776617 WRLWQKFLDDY 11 Unmodified _WRLWQKFLDDY_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-3|SYNE1;nc|ENSG00000131018|Q8NF91-11|SYNE1;nc|ENSG00000131018|Q8NF91-9|SYNE1;ENST00000460912.6_1_6:152443573-152489284:-|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000131018|ENST00000367255|SYNE1;ENSG00000054654|ENST00000555002|SYNE2 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.39794921875 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 129.2 1 129.2 128.7 129.7 0 0 0 0 0.23698 1 25521 25521 1.1933 0.84271 1 53885 3655;1266 35691 35712 52728 52728 0.0159609344304954 WRLWQKFLDDY 11 Unmodified _WRLWQKFLDDY_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-3|SYNE1;nc|ENSG00000131018|Q8NF91-11|SYNE1;nc|ENSG00000131018|Q8NF91-9|SYNE1;ENST00000460912.6_1_6:152443573-152489284:-|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000131018|ENST00000367255|SYNE1;ENSG00000054654|ENST00000555002|SYNE2 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.397705078125 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 135.97 1 135.97 135.47 136.47 0 0 0 0 0.22632 1 26939 26939 0.026206 0 1 53886 3655;1266 35691 35712 52729 52729 0.0159609344304954 WRLWQKFLDDY 11 Unmodified _WRLWQKFLDDY_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-3|SYNE1;nc|ENSG00000131018|Q8NF91-11|SYNE1;nc|ENSG00000131018|Q8NF91-9|SYNE1;ENST00000460912.6_1_6:152443573-152489284:-|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000131018|ENST00000367255|SYNE1;ENSG00000054654|ENST00000555002|SYNE2 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3969116210938 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 89.749 1 85.89 85.39 86.39 -3.8595 0 0 0 0.22632 1 17560 17560 0.172 0.17144 1 53887 3655;1266 35691 35712 52730 52730 0.0159609344304954 WRLWQKFLDDY 11 Unmodified _WRLWQKFLDDY_ 0 0 0 ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-3|SYNE1;nc|ENSG00000131018|Q8NF91-11|SYNE1;nc|ENSG00000131018|Q8NF91-9|SYNE1;ENST00000460912.6_1_6:152443573-152489284:-|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000131018|ENST00000367255|SYNE1;ENSG00000054654|ENST00000555002|SYNE2 ENSG00000131018|ENST00000367255|SYNE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3831787109375 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 161.23 1 156.44 155.94 156.94 -4.7952 0 0 0 0.22632 1 32064 32064 0.094841 0 1 53888 3655;1266 35691 35712 52731 52731 0.0159609344304954 WRMLAQKLSMD 11 Unmodified _WRMLAQKLSMD_ 0 0 0 nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B nc|ENSG00000107731|Q8IZJ1-2|UNC5B nc|ENSG00000107731|Q8IZJ1-2|UNC5B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23590087890625 3 460.23718 1377.68971 NaN NaN NaN NaN NaN NaN NaN 24.698 1 24.698 24.198 25.198 0 0 0 0 0.22632 1 4262 4262 5.4027 5.1041 1 53889 2436 35692 35713 52732 52732 0.01597433256392833 WRMQYNRRFVN 11 Unmodified _WRMQYNRRFVN_ 0 0 0 FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant FAU|p.R108W|1|0.5|ENSG00000149806|chr11:65120761-65120761|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.39599609375 2 785.396419 1568.77828 NaN NaN NaN NaN NaN NaN NaN 155.92 1 150.63 150.13 151.13 -5.2854 0 0 0 0.22632 1 30244 30244 0.026206 0 1 53890 11801 35693 35714 52733 52733 0.01664609611088963 WRMYVVRRRYR 11 Unmodified _WRMYVVRRRYR_ 0 0 0 MYO5A|p.K835R|1|0.3|ENSG00000197535|chr15:52375377-52375377|T/C|missense_variant MYO5A|p.K835R|1|0.3|ENSG00000197535|chr15:52375377-52375377|T/C|missense_variant MYO5A|p.K835R|1|0.3|ENSG00000197535|chr15:52375377-52375377|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7789306640625 3 547.640411 1639.8994 NaN NaN NaN NaN NaN NaN NaN 129.72 1 124.88 124.38 125.38 -4.8355 0 0 0 0.22632 1 24906 24906 0.094841 0.094841 1 53891 12192 35694 35715 52734 52734 0.1050485704440689 WRNYRMQFFFY 11 Unmodified _WRNYRMQFFFY_ 0 0 0 ENST00000368324.4_1_1:155852837-155852948:+|nuORF ENST00000368324.4_1_1:155852837-155852948:+|nuORF ENST00000368324.4_1_1:155852837-155852948:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 553.2625122070312 3 553.262606 1656.76599 NaN NaN NaN NaN NaN NaN NaN 177.85 1 173.06 172.56 173.56 -4.7898 0 0 0 0.22632 1 36382 36382 0 0 1 53892 9093 35695 35716 52735 52735 -0.03612426851964301 WRPCLIWI 8 Unmodified _WRPCLIWI_ 0 0 0 ENST00000420069.3_3_11:67195969-67200219:+|nuORF ENST00000420069.3_3_11:67195969-67200219:+|nuORF ENST00000420069.3_3_11:67195969-67200219:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7769775390625 2 543.799497 1085.58444 NaN NaN NaN NaN NaN NaN NaN 50.579 1 47.698 47.198 48.198 -2.8811 0 0 0 0.23749 1 9598 9598 0.0082765 0 1 53893 9653 35696 35717 52736 52736 0.04507304912954169 WRPRRWLRWWE 11 Unmodified _WRPRRWLRWWE_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.33349609375 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 49.217 1 49.217 48.717 49.717 0 0 0 0 0.22632 1 9303 9303 0 0 1 + 53894 24768 35697 35718 52737 52737 0.07776216779097922 WRPRRWLRWWE 11 Unmodified _WRPRRWLRWWE_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3277587890625 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 90.784 1 90.784 90.284 91.284 0 0 0 0 0.22632 1 17738 17738 0 0 1 + 53895 24768 35697 35718 52738 52738 0.07776216779097922 WRPRRWLRWWE 11 Unmodified _WRPRRWLRWWE_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3316650390625 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 72.312 1 69.001 68.501 69.501 -3.3107 0 0 0 0.22632 1 14091 14091 0 0 1 + 53896 24768 35697 35718 52739 52739 0.07776216779097922 WRPRRWLRWWE 11 Unmodified _WRPRRWLRWWE_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3223876953125 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 86.4 1 82.673 82.173 83.173 -3.727 0 0 0 0.22632 1 16890 16890 0.0072825 0.0072825 1 + 53897 24768 35697 35718 52740 52740 0.07776216779097922 WRPRRWLRWWE 11 Unmodified _WRPRRWLRWWE_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.33349609375 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 86.51 1 82.783 82.283 83.283 -3.727 0 0 0 0.22632 1 16910 16910 0 0 1 + 53898 24768 35697 35718 52741 52741 0.07776216779097922 WRPRRWLRWWE 11 Unmodified _WRPRRWLRWWE_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3281860351562 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 173.16 1 168.37 167.87 168.87 -4.7898 0 0 0 0.22632 1 35307 35307 0 0 1 + 53899 24768 35697 35718 52742 52742 0.07776216779097922 WRPRRWLRWWE 11 Unmodified _WRPRRWLRWWE_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.336181640625 3 576.31117 1725.91168 0.17178 9.8996E-05 -4.3474 -0.0025055 -4.1756 -0.0024065 576.6422118890358 157.78 0.10172 152.99 152.91 153.01 -4.7885 4 2 2 0 0 0 0.96227 1 31374 31374 0.08335 0.08335 1 662580 + 53900 24768 35697 35718 52743 52743 0.07776216779097922 WRPRRWLRWWE 11 Unmodified _WRPRRWLRWWE_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.312255859375 3 576.31117 1725.91168 0.36004 0.00020749 -3.3902 -0.0019538 -3.0301 -0.0017463 576.6432266155698 150.01 0.1748 144.89 144.79 144.96 -5.1204 6 4 2 0 0 0 0.8267 1 29076 29076 0.08335 0.08335 1 1119000 + 53901 24768 35697 35718 52744 52744 0.07776216779097922 WRPRRWLRWWE 11 Unmodified _WRPRRWLRWWE_ 0 0 0 REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.316650390625 3 576.31117 1725.91168 NaN NaN NaN NaN NaN NaN NaN 85.69 1 81.967 81.467 82.467 -3.7231 0 0 0 0.22632 1 16374 16374 0 0 1 + 53902 24768 35697 35718 52745 52745 0.07776216779097922 WRQKEDHQTWR 11 Unmodified _WRQKEDHQTWR_ 0 0 0 SLC12A5|p.E1019Kfs*40|1|0.54|ENSG00000124140|chr20:46056436-46056436|G/-|frameshift_variant;ENSG00000124140|ENST00000243964|SLC12A5;nc|ENSG00000124140|Q9H2X9|SLC12A5 SLC12A5|p.E1019Kfs*40|1|0.54|ENSG00000124140|chr20:46056436-46056436|G/-|frameshift_variant SLC12A5|p.E1019Kfs*40|1|0.54|ENSG00000124140|chr20:46056436-46056436|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3870239257812 2 785.387105 1568.75966 NaN NaN NaN NaN NaN NaN NaN 140.81 1 140.81 140.31 141.31 0 0 0 0 0.22632 1 28040 28040 0 0 1 53903 25668 35698 35719 52746 52746 -0.001972287591343047 WRQQLPTFLQQ 11 Unmodified _WRQQLPTFLQQ_ 0 0 0 nc|ENSG00000175518|Q8IYU4-2|UBQLNL;ENSG00000175518|ENST00000380184|UBQLNL nc|ENSG00000175518|Q8IYU4-2|UBQLNL nc|ENSG00000175518|Q8IYU4-2|UBQLNL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7818908691406 3 482.261371 1443.76228 NaN NaN NaN NaN NaN NaN NaN 159.36 1 154.09 153.59 154.59 -5.2712 0 0 0 0.22632 1 30921 30921 0.58532 0.41332 1 53904 6417 35699 35720 52747 52747 0.058152266458364466 WRQQNQRYFPF 11 Unmodified _WRQQNQRYFPF_ 0 0 0 REV__nc|ENSG00000125798|Q9Y261|FOXA2 REV__nc|ENSG00000125798|Q9Y261|FOXA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3893432617188 2 785.389116 1568.76368 NaN NaN NaN NaN NaN NaN NaN 149.36 1 144.62 144.12 145.12 -4.7323 0 0 0 0.23698 1 29663 29663 1.3295 0 1 + 53905 15830 35700 35721 52748 52748 0.0020486073458414467 WRRGLGVPGP 10 Unmodified _WRRGLGVPGP_ 0 0 0 ENST00000252599.8_2_19:17693482-17693788:+|nuORF ENST00000252599.8_2_19:17693482-17693788:+|nuORF ENST00000252599.8_2_19:17693482-17693788:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7796630859375 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 9.7841 1 9.7841 9.2841 10.284 0 0 0 0 0.22588 1 1169 1169 0 0 1 53906 8226 35701 35722 52749 52749 0.07143379902549896 WRRHQQECLWR 11 Unmodified _WRRHQQECLWR_ 0 0 0 REV__MTHFD1L|p.R339C|1|0.21|ENSG00000120254|chr6:150922235-150922235|C/T|missense_variant REV__MTHFD1L|p.R339C|1|0.21|ENSG00000120254|chr6:150922235-150922235|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26953125 3 533.268754 1596.78443 NaN NaN NaN NaN NaN NaN NaN 132.45 1 127.59 127.09 128.09 -4.8527 0 0 0 0.22632 1 25439 25439 0.026206 0 1 + 53907 23887 35702 35723 52750 52750 0.009911278426216086 WRRKRRWKRDY 11 Unmodified _WRRKRRWKRDY_ 0 0 0 REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 569.3090209960938 3 569.325591 1704.95494 NaN NaN NaN NaN NaN NaN NaN 172.85 1 167.95 167.45 168.45 -4.8977 0 0 0 0.22632 1 34302 34302 0.094841 0 1 + 53908 22959 35703 35724 52751 52751 0.13066406556390575 WRRKYEDRERK 11 Unmodified _WRRKYEDRERK_ 0 0 0 REV__IFFO1|p.R364Afs*19|1|0.41|ENSG00000010295|chr12:6548807-6548808|-/C|frameshift_variant REV__IFFO1|p.R364Afs*19|1|0.41|ENSG00000010295|chr12:6548807-6548808|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.391357421875 2 811.437129 1620.85971 NaN NaN NaN NaN NaN NaN NaN 166.77 1 161.98 161.48 162.48 -4.7898 0 0 0 0.23698 1 33545 33545 0 0 1 + 53909 13919 35704 35725 52752 52752 0.07411008574649713 WRRKYEDRERK 11 Unmodified _WRRKYEDRERK_ 0 0 0 REV__IFFO1|p.R364Afs*19|1|0.41|ENSG00000010295|chr12:6548807-6548808|-/C|frameshift_variant REV__IFFO1|p.R364Afs*19|1|0.41|ENSG00000010295|chr12:6548807-6548808|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2732543945312 3 541.293845 1620.85971 NaN NaN NaN NaN NaN NaN NaN 148.69 1 143.63 143.13 144.13 -5.0595 0 0 0 0.22632 1 28802 28802 0 0 1 + 53910 13919 35704 35725 52753 52753 0.07411008574649713 WRRQQEAL 8 Unmodified _WRRQQEAL_ 0 0 0 REV__ANLN|p.R153Q|1|0.09|ENSG00000011426|chr7:36399364-36399364|G/A|missense_variant REV__ANLN|p.R153Q|1|0.09|ENSG00000011426|chr7:36399364-36399364|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7936401367188 2 543.793789 1085.57303 0.42907 0.00023333 -1.7244 -0.00093771 -1.2953 -0.00070438 543.7928985475335 122.66 0.45685 118.11 117.88 118.34 -4.5476 18 12 2 0 0 0 0.19607 1 24169 24169 46.021 0.32134 1 1568700 + 53911 13067 35705 35726 52754 52754 0.03366199143169979 WRRQRRQRRAE 11 Unmodified _WRRQRRQRRAE_ 0 0 0 REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2791137695312 3 533.305078 1596.89341 NaN NaN NaN NaN NaN NaN NaN 60.137 1 60.137 59.637 60.637 0 0 0 0 0.22632 1 11526 11526 0.094841 0 1 + 53912 15734 35706 35727 52755 52755 0.11883474857108922 WRRQRRQRRAE 11 Unmodified _WRRQRRQRRAE_ 0 0 0 REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2703247070312 3 533.305078 1596.89341 NaN NaN NaN NaN NaN NaN NaN 64.359 1 64.359 63.859 64.859 0 0 0 0 0.22632 1 12390 12390 0.094841 0 1 + 53913 15734 35706 35727 52756 52756 0.11883474857108922 WRRRKKRDRPD 11 Unmodified _WRRRKKRDRPD_ 0 0 0 REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3894653320312 2 784.953281 1567.89201 NaN NaN NaN NaN NaN NaN NaN 177.89 1 173.02 172.52 173.52 -4.8686 0 0 0 0.23698 1 35406 35406 0.30703 0 1 + 53914 22998 35707 35728 52757 52757 0.13077840768323767 WRRRLVHMRRR 11 Unmodified _WRRRLVHMRRR_ 0 0 0 REV__HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant REV__HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2676391601562 3 541.323416 1620.94842 NaN NaN NaN NaN NaN NaN NaN 134.3 1 129.42 128.92 129.92 -4.8726 0 0 0 0.22632 1 25799 25799 0.50596 0.50539 1 + 53915 18194 35708 35729 52758 52758 0.16278190124012326 WRRRLVHMRRR 11 Unmodified _WRRRLVHMRRR_ 0 0 0 REV__HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant REV__HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.364990234375 2 811.481486 1620.94842 NaN NaN NaN NaN NaN NaN NaN 178.04 1 173.14 172.64 173.64 -4.9088 0 0 0 0.22632 1 35516 35516 0 0 1 + 53916 18194 35708 35729 52759 52759 0.16278190124012326 WRRRLVHMRRR 11 Unmodified _WRRRLVHMRRR_ 0 0 0 REV__HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant REV__HS6ST2|p.L496Cfs*7|1|0.51|ENSG00000171004|chrX:132628554-132628554|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.364990234375 2 811.481486 1620.94842 NaN NaN NaN NaN NaN NaN NaN 178.07 1 173.16 172.66 173.66 -4.9088 0 0 0 0.23698 1 35520 35520 0 0 1 + 53917 18194 35708 35729 52760 52760 0.16278190124012326 WRRRQRPP 8 Unmodified _WRRRQRPP_ 0 0 0 ENST00000370267.1_1_1:93811500-93811891:+|nuORF ENST00000370267.1_1_1:93811500-93811891:+|nuORF ENST00000370267.1_1_1:93811500-93811891:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3372802734375 2 576.33649 1150.65843 NaN NaN NaN NaN NaN NaN NaN 29.048 1 29.048 28.548 29.548 0 0 0 0 0.21486 1 5178 5178 2.5775 0.27475 1 53918 9138 35709 35730 52761 52761 0.08912409119511722 WRRRQRWRRRR 11 Unmodified _WRRRQRWRRRR_ 0 0 0 ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.271240234375 3 590.019495 1767.03666 NaN NaN NaN NaN NaN NaN NaN 169.13 1 164.25 163.75 164.75 -4.873 0 0 0 0.22632 1 33390 33390 0.094841 0.094841 1 53919 9185 35710 35731 52762 52762 0.18381946758813683 WRRRQRWRRRR 11 Unmodified _WRRRQRWRRRR_ 0 0 0 ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.271240234375 3 590.019495 1767.03666 NaN NaN NaN NaN NaN NaN NaN 169.14 1 164.27 163.77 164.77 -4.873 0 0 0 0.23698 1 33393 33393 0.073264 0 1 53920 9185 35710 35731 52763 52763 0.18381946758813683 WRRRRKMRRRE 11 Unmodified _WRRRRKMRRRE_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4021606445312 2 843.495124 1684.9757 NaN NaN NaN NaN NaN NaN NaN 177.92 1 173.05 172.55 173.55 -4.8686 0 0 0 0.22632 1 35414 35414 0 0 1 + 53921 20142 35711 35732 52764 52764 0.16060673664401293 WRRRRKMRRRE 11 Unmodified _WRRRRKMRRRE_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4021606445312 2 843.495124 1684.9757 NaN NaN NaN NaN NaN NaN NaN 177.93 1 173.06 172.56 173.56 -4.8686 0 0 0 0.23698 1 35415 35415 0 0 1 + 53922 20142 35711 35732 52765 52765 0.16060673664401293 WRRRRKMRRRE 11 Unmodified _WRRRRKMRRRE_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.4182739257812 2 843.495124 1684.9757 NaN NaN NaN NaN NaN NaN NaN 166.05 1 161.1 160.6 161.6 -4.9484 0 0 0 0.23698 1 32498 32498 0 0 1 + 53923 20142 35711 35732 52766 52766 0.16060673664401293 WRRRRRHQRSQ 11 Unmodified _WRRRRRHQRSQ_ 0 0 0 ENST00000439096.2_1_19:47734314-47734437:-|nuORF ENST00000439096.2_1_19:47734314-47734437:-|nuORF ENST00000439096.2_1_19:47734314-47734437:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2745361328125 3 541.308823 1620.90464 NaN NaN NaN NaN NaN NaN NaN 73.03 1 73.03 72.53 73.53 0 0 0 0 0.22632 1 14173 14173 0.026206 0 1 53924 9869 35712 35733 52767 52767 0.11902296951257085 WRRRRRHQRSQ 11 Unmodified _WRRRRRHQRSQ_ 0 0 0 ENST00000439096.2_1_19:47734314-47734437:-|nuORF ENST00000439096.2_1_19:47734314-47734437:-|nuORF ENST00000439096.2_1_19:47734314-47734437:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2794189453125 3 541.308823 1620.90464 0.30405 0.00016458 -4.1755 -0.0022602 -3.8715 -0.0020957 541.3072733728977 139.29 0.21252 139.29 139.19 139.4 0 7 5 2 0 0 0 0.96219 1 27661 27661 1.1098 0.65524 1 5041000 53925 9869 35712 35733 52768 52768 0.11902296951257085 WRRRRRHQRSQ 11 Unmodified _WRRRRRHQRSQ_ 0 0 0 ENST00000439096.2_1_19:47734314-47734437:-|nuORF ENST00000439096.2_1_19:47734314-47734437:-|nuORF ENST00000439096.2_1_19:47734314-47734437:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2740478515625 3 541.308823 1620.90464 0.1895 0.00010258 0.64514 0.00034922 0.83464 0.0004518 541.3085303448571 148.18 0.35561 143.02 142.87 143.22 -5.1557 11 9 2 0 0 0 0.81901 1 28688 28688 1.1098 0 1 2406100 53926 9869 35712 35733 52769 52769 0.11902296951257085 WRRRRRRRWR 10 Unmodified _WRRRRRRRWR_ 0 0 0 SLC4A2|p.E125Rfs*120|1|0.33|ENSG00000164889|chr7:151064677-151064677|G/-|frameshift_variant REV__SLC4A2|p.E125Rfs*120|1|0.33|ENSG00000164889|chr7:151064677-151064677|G/-|frameshift_variant REV__SLC4A2|p.E125Rfs*120|1|0.33|ENSG00000164889|chr7:151064677-151064677|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7919311523438 3 547.333303 1638.97808 -0.071614 -3.9197E-05 -2.2614 -0.0012377 -2.333 -0.0012769 547.3319747896363 108.24 0.16745 103.82 103.68 103.85 -4.4121 5 4 2 0 0 0 0.91149 1 20758 20758 0.13989 0 1 539180 53927 24648 35713 35734 52770 52770 0.18414890184362775 WRRRWQHRYW 10 Unmodified _WRRRWQHRYW_ 0 0 0 ENST00000570069.5_1_16:1826945-1827407:+|nuORF;ENST00000561903.6_1_16:1826945-1828699:+|nuORF ENST00000570069.5_1_16:1826945-1827407:+|nuORF ENST00000570069.5_1_16:1826945-1827407:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3817138671875 2 815.424159 1628.83377 NaN NaN NaN NaN NaN NaN NaN 172.37 1 172.37 171.87 172.87 0 0 0 0 0.22588 1 35581 35581 0.45834 0.10771 1 53928 11309 35714 35735 52771 52771 0.04450203913734185 WRRRWQHRYWR 11 Unmodified _WRRRWQHRYWR_ 0 0 0 ENST00000570069.5_1_16:1826945-1827407:+|nuORF;ENST00000561903.6_1_16:1826945-1828699:+|nuORF ENST00000570069.5_1_16:1826945-1827407:+|nuORF ENST00000570069.5_1_16:1826945-1827407:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 893.3896484375 2 893.474715 1784.93488 NaN NaN NaN NaN NaN NaN NaN 35.249 1 32.997 32.497 33.497 -2.2527 0 0 0 0.23698 1 6206 6206 0 0 1 53929 11309 35715 35736 52772 52772 0.07380655616429976 WRRTKQFG 8 Unmodified _WRRTKQFG_ 0 0 0 REV__nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 REV__nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.20220947265625 3 360.201675 1077.5832 NaN NaN NaN NaN NaN NaN NaN 159.51 1 159.51 159.01 160.01 0 0 0 0 0.21486 1 32027 32027 1.6526 0.87609 1 + 53930 18509 35716 35737 52773 52773 0.047508068684237514 WRRTWVPRQNP 11 Unmodified _WRRTWVPRQNP_ 0 0 0 sp|P16755|UL13_HCMVAUncharacterizedproteinUL13OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL13PE=1SV=1 sp|P16755|UL13_HCMVAUncharacterizedproteinUL13OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL13PE=1SV=1 sp|P16755|UL13_HCMVAUncharacterizedproteinUL13OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL13PE=1SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 499.2716979980469 3 499.272493 1494.79565 NaN NaN NaN NaN NaN NaN NaN 7.0196 1 6.0047 5.5047 6.5047 -1.0148 0 0 0 0.22632 1 528 528 0.094841 0 1 53931 25753 35717 35738 52774 52774 0.06804273208422273 WRRVRRSVRLR 11 Unmodified _WRRVRRSVRLR_ 0 0 0 REV__ENST00000488132.5_1_3:98437266-98451455:-|nuORF REV__ENST00000488132.5_1_3:98437266-98451455:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 513.9906005859375 3 513.990431 1538.94946 NaN NaN NaN NaN NaN NaN NaN 178.98 1 174.19 173.69 174.69 -4.7898 0 0 0 0.22632 1 36620 36620 0 0 1 + 53932 22270 35718 35739 52775 52775 0.20154727764565905 WRRWKRRGGRR 11 Unmodified _WRRWKRRGGRR_ 0 0 0 ENST00000284061.7_2_17:54911541-54912223:+|nuORF ENST00000284061.7_2_17:54911541-54912223:+|nuORF ENST00000284061.7_2_17:54911541-54912223:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3943481445312 2 785.46415 1568.91375 NaN NaN NaN NaN NaN NaN NaN 172.07 1 167.28 166.78 167.78 -4.7898 0 0 0 0.22632 1 35030 35030 0.026206 0 1 53933 8451 35719 35740 52776 52776 0.15204690307541568 WRRWPTRPWAW 11 Unmodified _WRRWPTRPWAW_ 0 0 0 REV__ENST00000608648.1_1_19:18235548-18239224:+|nuORF REV__ENST00000608648.1_1_19:18235548-18239224:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2796630859375 3 533.2811 1596.82147 NaN NaN NaN NaN NaN NaN NaN 145.38 1 145.38 144.88 145.88 0 0 0 0 0.22632 1 29053 29053 0.094841 0.087559 1 + 53934 23482 35720 35741 52777 52777 0.046931674506822674 WRRWPTRPWAW 11 Unmodified _WRRWPTRPWAW_ 0 0 0 REV__ENST00000608648.1_1_19:18235548-18239224:+|nuORF REV__ENST00000608648.1_1_19:18235548-18239224:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2811889648438 3 533.2811 1596.82147 -0.33809 -0.0001803 0.99879 0.00053264 0.6607 0.00035234 533.2814804917729 16.335 0.20609 15.119 15.01 15.216 -1.2159 14 5 3 0 0 0 0.81901 1 2566 2566 1.1098 1.0149 1 890190 + 53935 23482 35720 35741 52778 52778 0.046931674506822674 WRRWQPRIWAL 11 Unmodified _WRRWQPRIWAL_ 0 0 0 KCNC1|p.K458Efs*16|1|0.28|ENSG00000129159|chr11:17772456-17772457|-/A|frameshift_variant;KCNC1|p.K457Rfs*20|2|0.33|ENSG00000129159|chr11:17772457-17772457|A/-|frameshift_variant;nc|ENSG00000129159|P48547|KCNC1;ENSG00000129159|ENST00000265969|KCNC1 KCNC1|p.K458Efs*16|1|0.28|ENSG00000129159|chr11:17772456-17772457|-/A|frameshift_variant KCNC1|p.K458Efs*16|1|0.28|ENSG00000129159|chr11:17772456-17772457|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6881713867188 3 523.29675 1566.86842 NaN NaN NaN NaN NaN NaN NaN 57.207 1 54.313 53.813 54.813 -2.8944 0 0 0 0.22632 1 10977 10977 0.094841 0.068635 1 53936 3557 35721 35742 52779 52779 0.10766027001841394 WRRWRKRWRR 10 Unmodified _WRRWRKRWRR_ 0 0 0 REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7785034179688 3 547.990654 1640.95013 0.37197 0.00020384 -0.33344 -0.00018272 0.038535 2.1117E-05 547.9911078614118 28.714 0.31749 28.714 28.457 28.774 0 11 8 2 0 0 0 1.1344 1 5090 5090 0.0013812 0 1 1673900 + 53937 20178 35722 35743 52780 52780 0.15529567204271189 WRRWRKRWRR 10 Unmodified _WRRWRKRWRR_ 0 0 0 REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7703247070312 3 547.990654 1640.95013 NaN NaN NaN NaN NaN NaN NaN 166.4 1 161.42 160.92 161.92 -4.9811 0 0 0 0.22588 1 32611 32611 0 0 1 + 53938 20178 35722 35743 52781 52781 0.15529567204271189 WRSEFFRRMIH 11 Unmodified _WRSEFFRRMIH_ 0 0 0 REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2664794921875 3 522.269983 1563.78812 NaN NaN NaN NaN NaN NaN NaN 112.28 1 108 107.5 108.5 -4.2725 0 0 0 0.22632 1 21618 21618 0.50596 0.5 1 + 53939 14344 35723 35744 52782 52782 0.028777976164747088 WRSRMLVP 8 Unmodified _WRSRMLVP_ 0 0 0 ENST00000331817.5_1_12:52639235-52639346:+|nuORF ENST00000331817.5_1_12:52639235-52639346:+|nuORF ENST00000331817.5_1_12:52639235-52639346:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 348.86614990234375 3 348.863895 1043.56985 NaN NaN NaN NaN NaN NaN NaN 9.5018 1 8.7076 8.2076 9.2076 -0.79424 0 0 0 0.21486 1 1102 1102 0 0 1 53940 8782 35724 35745 52783 52783 0.049812327648396604 WRSWRRARA 9 Unmodified _WRSWRRARA_ 0 0 0 ENST00000438382.2_1_7:74578217-74578785:-|nuORF ENST00000438382.2_1_7:74578217-74578785:-|nuORF ENST00000438382.2_1_7:74578217-74578785:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7520141601562 2 622.847222 1243.67989 NaN NaN NaN NaN NaN NaN NaN 9.9971 1 9.2028 8.7028 9.7028 -0.79424 0 0 0 0.23508 1 1208 1208 0 0 1 53941 9862 35725 35746 52784 52784 0.06779794148224028 WRTQQNLWRLY 11 Unmodified _WRTQQNLWRLY_ 0 0 0 REV__ENSG00000103044|ENST00000569188|HAS3 REV__ENSG00000103044|ENST00000569188|HAS3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2774047851562 3 521.944153 1562.81063 -0.288 -0.00015032 -1.3213 -0.00068965 -1.6093 -0.00083997 521.943617351709 75.192 0.57935 71.828 71.521 72.101 -3.3643 27 16 3 0 0 0 0.66087 1 14699 14699 1.4551 0.047682 1 1727200 + 53942 14861 35726 35747 52785 52785 0.05173720285733907 WRTQQNLWRLY 11 Unmodified _WRTQQNLWRLY_ 0 0 0 REV__ENSG00000103044|ENST00000569188|HAS3 REV__ENSG00000103044|ENST00000569188|HAS3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2648315429688 3 521.944153 1562.81063 -0.288 -0.00015032 -1.3213 -0.00068965 -1.6093 -0.00083997 521.943617351709 75.192 0.57935 71.828 71.521 72.101 -3.3643 27 16 3 0 0 0 0.89122 1 14682 14682 0.50596 0 1 1727200 + 53943 14861 35726 35747 52786 52786 0.05173720285733907 WRTRGRRWLWR 11 Unmodified _WRTRGRRWLWR_ 0 0 0 ENST00000379565.7_1_X:20227482-20284914:-|nuORF ENST00000379565.7_1_X:20227482-20284914:-|nuORF ENST00000379565.7_1_X:20227482-20284914:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7702026367188 3 543.643031 1627.90726 NaN NaN NaN NaN NaN NaN NaN 96.312 1 96.312 95.812 96.812 0 0 0 0 0.23698 1 18868 18868 0.073264 0.073264 1 53944 9298 35727 35748 52787 52787 0.1184275235621044 WRWFVLESRRW 11 Unmodified _WRWFVLESRRW_ 0 0 0 REV__ENST00000551538.5_1_14:105963624-105963882:+|nuORF REV__ENST00000551538.5_1_14:105963624-105963882:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3780517578125 2 810.930951 1619.84735 NaN NaN NaN NaN NaN NaN NaN 162.32 1 162.32 161.82 162.82 0 0 0 0 0.22632 1 32631 32631 0 0 1 + 53945 18961 35728 35749 52788 52788 0.062220169022793925 WRWLERWPE 9 Unmodified _WRWLERWPE_ 0 0 0 REV__nc|ENSG00000204536|Q8TD31-3|CCHCR1 REV__nc|ENSG00000204536|Q8TD31-3|CCHCR1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.2323913574219 3 453.231523 1356.67274 NaN NaN NaN NaN NaN NaN NaN 60.41 1 57.096 56.596 57.596 -3.3139 0 0 0 0.19651 1 11251 11251 0.40827 0.395 1 + 53946 19543 35729 35750 52789 52789 0.008670167571381171 WRWLRRQELLL 11 Unmodified _WRWLRRQELLL_ 0 0 0 REV__ENST00000494373.1_1_2:54014190-54014463:+|nuORF REV__ENST00000494373.1_1_2:54014190-54014463:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.681884765625 3 523.643927 1567.90995 NaN NaN NaN NaN NaN NaN NaN 156.37 1 151.08 150.58 151.58 -5.2854 0 0 0 0.23698 1 30335 30335 0.50596 0 1 + 53947 22364 35730 35751 52790 52790 0.14871162970507612 WRWLTDSNAHR 11 Unmodified _WRWLTDSNAHR_ 0 0 0 ENSG00000283297|ENST00000637658|TEX52 ENSG00000283297|ENST00000637658|TEX52 ENSG00000283297|ENST00000637658|TEX52 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2413024902344 3 481.24097 1440.70108 NaN NaN NaN NaN NaN NaN NaN 118.9 1 118.9 118.4 119.4 0 0 0 0 0.22632 1 23419 23419 0.50596 0 1 53948 8056 35731 35752 52791 52791 -0.0016428533358521236 WRWPGRRRWRG 11 Unmodified _WRWPGRRRWRG_ 0 0 0 ENST00000605833.1_1_10:17258201-17271901:-|nuORF ENST00000605833.1_1_10:17258201-17271901:-|nuORF ENST00000605833.1_1_10:17258201-17271901:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6875610351562 3 523.62386 1567.84975 NaN NaN NaN NaN NaN NaN NaN 109.03 1 109.03 108.53 109.53 0 0 0 0 0.22632 1 21438 21438 0.50596 0.47975 1 53949 11736 35732 35753 52792 52792 0.08853910150628508 WRWRRRRRRR 10 Unmodified _WRWRRRRRRR_ 0 0 0 REV__SLC4A2|p.E125Rfs*120|1|0.33|ENSG00000164889|chr7:151064677-151064677|G/-|frameshift_variant REV__SLC4A2|p.E125Rfs*120|1|0.33|ENSG00000164889|chr7:151064677-151064677|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7760620117188 3 547.333303 1638.97808 0.32958 0.00018039 -1.3478 -0.0007377 -1.0182 -0.00055731 547.6674450875395 134.64 0.14087 134.64 134.57 134.71 0 5 3 2 0 0 0 1.1347 1 26666 26666 0.13989 0 1 798570 53950 24648 35733 35754 52793 52793 0.18414890184362775 WRWRSLRTRRR 11 Unmodified _WRWRSLRTRRR_ 0 0 0 ENST00000344697.2_1_3:43122946-43147521:-|nuORF ENST00000344697.2_1_3:43122946-43147521:-|nuORF ENST00000344697.2_1_3:43122946-43147521:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.773193359375 3 543.653819 1627.93963 0.32474 0.00017655 0.19586 0.00010648 0.5206 0.00028302 543.9876881670513 149.33 0.13904 144.59 144.52 144.66 -4.7323 5 3 2 0 0 0 0.82039 1 29649 29649 0.92553 0 1 1336100 53951 8895 35734 35755 52794 52794 0.15077539759158753 WRWRSLRTRRR 11 Unmodified _WRWRSLRTRRR_ 0 0 0 ENST00000344697.2_1_3:43122946-43147521:-|nuORF ENST00000344697.2_1_3:43122946-43147521:-|nuORF ENST00000344697.2_1_3:43122946-43147521:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7800903320312 3 543.653819 1627.93963 NaN NaN NaN NaN NaN NaN NaN 156.13 1 150.85 150.35 151.35 -5.2854 0 0 0 0.22632 1 30288 30288 0.50596 0.50596 1 53952 8895 35734 35755 52795 52795 0.15077539759158753 WRYDNQRQFME 11 Unmodified _WRYDNQRQFME_ 0 0 0 ENST00000528662.6_1_11:102584081-102593757:-|nuORF;ENSG00000118113|ENST00000236826|MMP8 ENST00000528662.6_1_11:102584081-102593757:-|nuORF ENST00000528662.6_1_11:102584081-102593757:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 524.963623046875 3 524.905258 1571.69395 NaN NaN NaN NaN NaN NaN NaN 146.54 1 146.54 146.04 147.04 0 0 0 0 0.22632 1 29305 29305 0.50596 0.47975 1 53953 3016 35735 35756 52796 52796 -0.06903385996338329 WRYHKRVRRWS 11 Unmodified _WRYHKRVRRWS_ 0 0 0 REV__ENST00000396757.5_1_9:35615990-35616170:-|nuORF REV__ENST00000396757.5_1_9:35615990-35616170:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3480834960938 2 815.452917 1628.89128 NaN NaN NaN NaN NaN NaN NaN 99.155 1 95.023 94.523 95.523 -4.1326 0 0 0 0.23698 1 19474 19474 0 0 1 + 53954 21286 35736 35757 52797 52797 0.10199046119282684 WRYLAEFP 8 Unmodified _WRYLAEFP_ 0 0 0 nc|ENSG00000162413|Q9UJP4-2|KLHL21;ENSG00000162413|ENST00000377658|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.275146484375 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 124.79 1 120.19 119.69 120.69 -4.5984 0 0 0 0.2325 1 24608 24608 1.4551 0 1 53955 12411 35737 35758 52798 52798 0.0022177765142714634 WRYLLRCRYQL 11 Unmodified _WRYLLRCRYQL_ 0 0 0 REV__ATF7|p.P222Lfs*48|1|0.19|ENSG00000170653|chr12:53533190-53533190|C/-|frameshift_variant REV__ATF7|p.P222Lfs*48|1|0.19|ENSG00000170653|chr12:53533190-53533190|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3924560546875 2 785.427187 1568.83982 NaN NaN NaN NaN NaN NaN NaN 127.28 1 122.48 121.98 122.98 -4.7958 0 0 0 0.23698 1 24431 24431 1.1933 0 1 + 53956 13140 35738 35759 52799 52799 0.07815541310378649 WRYRCWERRFQ 11 Unmodified _WRYRCWERRFQ_ 0 0 0 ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4150390625 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 117.8 1 117.8 117.3 118.3 0 0 0 0 0.23698 1 23202 23202 0 0 1 53957 8754 35739 35760 52800 52800 0.0007170087667418557 WRYRCWERRFQ 11 Unmodified _WRYRCWERRFQ_ 0 0 0 ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4146118164062 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 134.66 1 134.66 134.16 135.16 0 0 0 0 0.23698 1 26659 26659 0 0 1 53958 8754 35739 35760 52801 52801 0.0007170087667418557 WRYRCWERRFQ 11 Unmodified _WRYRCWERRFQ_ 0 0 0 ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4142456054688 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 176.2 1 176.2 175.7 176.7 0 0 0 0 0.23698 1 36502 36502 0 0 1 53959 8754 35739 35760 52802 52802 0.0007170087667418557 WRYRCWERRFQ 11 Unmodified _WRYRCWERRFQ_ 0 0 0 ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.414794921875 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 94.81 1 90.76 90.26 91.26 -4.0496 0 0 0 0.23698 1 18581 18581 0 0 1 53960 8754 35739 35760 52803 52803 0.0007170087667418557 WRYRCWERRFQ 11 Unmodified _WRYRCWERRFQ_ 0 0 0 ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4163818359375 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 45.493 1 42.627 42.127 43.127 -2.8653 0 0 0 0.23698 1 8256 8256 0.30703 0 1 53961 8754 35739 35760 52804 52804 0.0007170087667418557 WRYRCWERRFQ 11 Unmodified _WRYRCWERRFQ_ 0 0 0 ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.41455078125 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 46.546 1 43.681 43.181 44.181 -2.8653 0 0 0 0.23698 1 8464 8464 0.30703 0.30703 1 53962 8754 35739 35760 52805 52805 0.0007170087667418557 WRYRCWERRFQ 11 Unmodified _WRYRCWERRFQ_ 0 0 0 ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4149169921875 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 55.372 1 52.237 51.737 52.737 -3.1352 0 0 0 0.23698 1 10231 10231 0.30703 0.30703 1 53963 8754 35739 35760 52806 52806 0.0007170087667418557 WRYRCWERRFQ 11 Unmodified _WRYRCWERRFQ_ 0 0 0 ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.411865234375 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 58.15 1 54.898 54.398 55.398 -3.2517 0 0 0 0.23698 1 10800 10800 0.30703 0.30703 1 53964 8754 35739 35760 52807 52807 0.0007170087667418557 WRYRCWERRFQ 11 Unmodified _WRYRCWERRFQ_ 0 0 0 ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4150390625 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 142.3 1 137.28 136.78 137.78 -5.0261 0 0 0 0.23698 1 27426 27426 0 0 1 53965 8754 35739 35760 52808 52808 0.0007170087667418557 WRYRCWERRFQ 11 Unmodified _WRYRCWERRFQ_ 0 0 0 ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.4136352539062 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 163.73 1 158.67 158.17 159.17 -5.0648 0 0 0 0.23698 1 31876 31876 0.26902 0.26902 1 53966 8754 35739 35760 52809 52809 0.0007170087667418557 WRYVRVLS 8 Unmodified _WRYVRVLS_ 0 0 0 nc|ENSG00000125967|Q96P71-3|NECAB3;ENST00000488489.5_1_20:32247922-32262169:-|nuORF nc|ENSG00000125967|Q96P71-3|NECAB3 nc|ENSG00000125967|Q96P71-3|NECAB3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2097473144531 3 360.210059 1077.60835 NaN NaN NaN NaN NaN NaN NaN 87.764 1 84.014 83.514 84.514 -3.7501 0 0 0 0.23899 1 16792 16792 1.3295 0 1 53967 10486 35740 35761 52810 52810 0.07264861671001199 WSCFDWSI 8 Unmodified _WSCFDWSI_ 0 0 0 REV__ENST00000474157.1_1_7:23286447-23286639:+|nuORF REV__ENST00000474157.1_1_7:23286447-23286639:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.263427734375 2 522.218203 1042.42185 -0.66662 -0.00034812 -2.1311 -0.0011129 -2.7977 -0.001461 522.2174498835299 133.65 0.61786 128.77 128.47 129.09 -4.8726 22 17 2 0 0 0 0.56049 1 25640 25640 24.674 5.2349 1 1460700 + 53968 21411 35741 35762 52811 52811 -0.09766123279700878 WSCGSCCS 8 Unmodified _WSCGSCCS_ 0 0 0 REV__DSC1|p.N542Kfs*28|1|0.32|ENSG00000134765|chr18:31139785-31139786|-/T|frameshift_variant REV__DSC1|p.N542Kfs*28|1|0.32|ENSG00000134765|chr18:31139785-31139786|-/T|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 832.2421875 1 832.242256 831.23498 -1.4368 -0.0011957 -0.92399 -0.00076898 -2.3607 -0.0019647 832.2424896974296 11.282 1.0555 10.216 9.4578 10.513 -1.0664 43 29 2 0 0 0 8448 1 1189 1189 0 0 1 397620 + 53969 13750 35742 35763 52812 52812 -0.18738806431224475 WSEEKMWSY 9 Unmodified _WSEEKMWSY_ 0 0 0 ENST00000311351.8_1_8:38027330-38027414:-|nuORF;LSM1|p.K55Nfs*20|1|0.32|ENSG00000175324|chr8:38169868-38169868|T/-|frameshift_variant ENST00000311351.8_1_8:38027330-38027414:-|nuORF ENST00000311351.8_1_8:38027330-38027414:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7595825195312 2 623.265881 1244.51721 1.0469 0.00065248 -0.56306 -0.00035093 0.48381 0.00030155 623.2656639066636 127.44 0.45423 122.82 122.5 122.96 -4.6172 15 12 2 0 0 0 0.74927 1 25117 25117 23.79 14.407 1 1814500 53970 8650 35743 35764 52813 52813 -0.09526814879313861 WSKPHVPF 8 Unmodified _WSKPHVPF_ 0 0 0 REV__ENSG00000205903|ENST00000382252|ZNF316 REV__ENSG00000205903|ENST00000382252|ZNF316 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 499.2646789550781 2 499.266345 996.518136 NaN NaN NaN NaN NaN NaN NaN 69.301 1 65.91 65.41 66.41 -3.3903 0 0 0 0.22665 1 13104 13104 9.544 0 1 + 53971 19605 35744 35765 52814 52814 0.019738123425668164 WSLAILLL 8 Unmodified _WSLAILLL_ 0 0 0 ENSG00000163328|ENST00000392552|GPR155 ENSG00000163328|ENST00000392552|GPR155 ENSG00000163328|ENST00000392552|GPR155 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.230224609375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 95.883 1 91.834 91.334 92.334 -4.0496 0 0 0 0.21486 1 18797 18797 0.45834 0 1 53972 5415 35745 35766 52815 52815 0.11265324322005199 WSLAILLL 8 Unmodified _WSLAILLL_ 0 0 0 ENSG00000163328|ENST00000392552|GPR155 ENSG00000163328|ENST00000392552|GPR155 ENSG00000163328|ENST00000392552|GPR155 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.23797607421875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 129.44 1 124.81 124.31 125.31 -4.6292 0 0 0 0.21486 1 25510 25510 0.45834 0 1 53973 5415 35745 35766 52816 52816 0.11265324322005199 WSLFQAVSRER 11 Unmodified _WSLFQAVSRER_ 0 0 0 REV__ENSG00000171219|ENST00000342711|CDC42BPG REV__ENSG00000171219|ENST00000342711|CDC42BPG MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23382568359375 3 460.245721 1377.71533 NaN NaN NaN NaN NaN NaN NaN 73.346 1 73.346 72.846 73.846 0 0 0 0 0.22632 1 14234 14234 0.03141 0.018144 1 + 53974 18211 35746 35767 52817 52817 0.041583670947147766 WSMQHIPAL 9 Unmodified _WSMQHIPAL_ 0 0 0 ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF ENSG00000135749|ENST00000258229|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.1783752441406 3 361.519905 1081.53789 -0.46315 -0.00016744 1.047 0.00037852 0.58389 0.00021109 361.5201092749872 17.44 0.4453 16.129 16.03 16.475 -1.3109 19 12 2 0 0 0 0.62649 1 2809 2809 0.40827 0 1 357200 53975 3948 35747 35768 52818 52818 0.0003782029100420914 WSPLDRLLFY 10 Unmodified _WSPLDRLLFY_ 0 0 0 REV__nc|ENSG00000151876|Q9UKT5-2|FBXO4 REV__nc|ENSG00000151876|Q9UKT5-2|FBXO4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2164611816406 3 437.236163 1308.68666 NaN NaN NaN NaN NaN NaN NaN 84.061 1 80.35 79.85 80.85 -3.7117 0 0 0 0.22588 1 16053 16053 8.9762 0.68981 1 + 53976 17087 35748 35769 52819 52819 0.04466249465576766 WSPRARRAR 9 Unmodified _WSPRARRAR_ 0 0 0 ENST00000393885.8_1_17:40172159-40173590:+|nuORF;ENST00000393880.5_1_17:40172159-40172255:+|nuORF ENST00000393885.8_1_17:40172159-40173590:+|nuORF ENST00000393885.8_1_17:40172159-40173590:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 385.89031982421875 3 385.891724 1154.65334 NaN NaN NaN NaN NaN NaN NaN 9.4444 1 9.4444 8.9444 9.9444 0 0 0 0 0.23508 1 1091 1091 0 0 1 53977 9399 35749 35770 52820 52820 0.08220105256873467 WSPRSGSP 8 Unmodified _WSPRSGSP_ 0 0 0 REV__ENST00000429283.2_1_2:233194466-233199371:+|nuORF REV__ENST00000429283.2_1_2:233194466-233199371:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2158203125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 84.17 1 80.261 79.761 80.761 -3.9093 0 0 0 0.21039 1 15996 15996 16.942 1.1741 1 + 53978 21600 35750 35771 52821 52821 -0.027245144849416647 WSPSHCDC 8 Unmodified _WSPSHCDC_ 0 0 0 ENSG00000183775|ENST00000512467|KCTD16 ENSG00000183775|ENST00000512467|KCTD16 ENSG00000183775|ENST00000512467|KCTD16 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 312.11029052734375 3 312.110917 933.310922 NaN NaN NaN NaN NaN NaN NaN 130.69 1 125.91 125.41 126.41 -4.7725 0 0 0 0.21486 1 25157 25157 0 0 1 53979 6868 35751 35772 52822 52822 -0.15840086259436248 WSPSRSKKF 9 Unmodified _WSPSRSKKF_ 0 0 0 REV__nc|ENSG00000028116|Q86Y07-4|VRK2 REV__nc|ENSG00000028116|Q86Y07-4|VRK2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20709228515625 3 374.873336 1121.59818 0.0805 3.0177E-05 -0.32713 -0.00012263 -0.24663 -9.2455E-05 375.2075313083495 106.02 0.65379 106.02 105.67 106.33 0 26 18 2 0 0 0 0.67174 1 20810 20810 8.1555 0 1 1474100 + 53980 14009 35752 35773 52823 52823 0.04224253945744749 WSPSRSKKF 9 Unmodified _WSPSRSKKF_ 0 0 0 REV__nc|ENSG00000028116|Q86Y07-4|VRK2 REV__nc|ENSG00000028116|Q86Y07-4|VRK2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 374.873336 1121.59818 0.0805 3.0177E-05 -0.32713 -0.00012263 -0.24663 -9.2455E-05 375.2075313083495 106.02 0.65379 106.02 105.67 106.33 0 0.28957 -0.00037111 NaN 8.1555 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1474100 + 53981 14009 35752 35773 0.04224253945744749 WSPSRSKKF 9 Unmodified _WSPSRSKKF_ 0 0 0 REV__nc|ENSG00000028116|Q86Y07-4|VRK2 REV__nc|ENSG00000028116|Q86Y07-4|VRK2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 374.873336 1121.59818 -0.20285 -7.6043E-05 0.24301 9.1097E-05 0.040157 1.5054E-05 374.87355364676654 110.08 0.38373 105.63 105.34 105.73 -4.4518 -0.096768 0.00027008 NaN 8.1555 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1056100 + 53982 14009 35752 35773 0.04224253945744749 WSPSRSKKF 9 Unmodified _WSPSRSKKF_ 0 0 0 REV__nc|ENSG00000028116|Q86Y07-4|VRK2 REV__nc|ENSG00000028116|Q86Y07-4|VRK2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 374.873336 1121.59818 -0.039244 -1.4711E-05 0.090898 3.4075E-05 0.051655 1.9364E-05 374.8733659248068 109.72 0.56281 105.53 105.33 105.89 -4.1826 -0.19281 9.9015E-05 NaN 8.1555 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1461400 + 53983 14009 35752 35773 0.04224253945744749 WSPTEGPT 8 Unmodified _WSPTEGPT_ 0 0 0 REV__ENSG00000172037|ENST00000305544|LAMB2 REV__ENSG00000172037|ENST00000305544|LAMB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2189636230469 2 437.7007 873.386848 0.31383 0.00013736 -0.31027 -0.00013581 0.0035544 1.5558E-06 437.70047792987117 75.146 0.93945 75.146 74.639 75.578 0 47 26 2 0 0 0 0.58903 1 14590 14590 38.151 11.81 1 2662000 + 53984 18268 35753 35774 52824 52824 -0.054910428159928415 WSPTEGPT 8 Unmodified _WSPTEGPT_ 0 0 0 REV__ENSG00000172037|ENST00000305544|LAMB2 REV__ENSG00000172037|ENST00000305544|LAMB2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21942138671875 2 437.7007 873.386848 -0.08963 -3.9231E-05 0.34839 0.00015249 0.25876 0.00011326 437.7006821009744 79.227 0.9507 75.422 74.913 75.864 -3.8048 46 26 2 0 0 0 0.58903 1 14994 14994 30.225 13.283 1 3314400 + 53985 18268 35753 35774 52825 52825 -0.054910428159928415 WSQHYHQGYY 10 Unmodified _WSQHYHQGYY_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.237548828125 3 456.863388 1367.56833 -0.011501 -5.2545E-06 0.16357 7.4729E-05 0.15207 6.9475E-05 456.8634425362469 50.936 1.2543 47.891 47.53 48.784 -3.0453 117 35 5 0 0 0 0.74847 1 9361 9361 6.1918 6.1918 1 65389000 53986 4960 35754 35775 52826 52826 -0.10074729790244419 WSQHYHQGYY 10 Unmodified _WSQHYHQGYY_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23956298828125 3 456.863388 1367.56833 -0.078945 -3.6067E-05 0.1821 8.3196E-05 0.10316 4.7129E-05 456.86346518520804 50.884 1.7405 47.832 47.398 49.138 -3.0517 152 49 5 0 0 0 0.72179 1 9374 9374 8.9762 8.9762 1 90779000 53987 4960 35754 35775 52827 52827 -0.10074729790244419 WSQHYHQGYY 10 Unmodified _WSQHYHQGYY_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 456.863388 1367.56833 -0.25053 -0.00011446 0.41668 0.00019037 0.16615 7.5909E-05 456.8635680093308 50.825 1.6333 47.943 47.571 49.204 -2.8824 0.054383 0.0002378 NaN 8.9762 130 46 6 NaN NaN NaN NaN 0 NaN NaN 0 89604000 53988 4960 35754 35775 -0.10074729790244419 WSSIPASPA 9 Unmodified _WSSIPASPA_ 0 0 0 nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF nc|ENSG00000038382|O75962-4|TRIO nc|ENSG00000038382|O75962-4|TRIO MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2311706542969 2 458.232168 914.449782 NaN NaN NaN NaN NaN NaN NaN 160.18 1 154.92 154.42 155.42 -5.2526 0 0 0 0.19656 1 31085 31085 0.073264 0 1 53989 1182 35755 35776 52828 52828 -0.01086477027968158 WSSRSVRSV 9 Unmodified _WSSRSVRSV_ 0 0 0 KLF15|p.R407W|1|0.34|ENSG00000163884|chr3:126343759-126343759|G/A|missense_variant KLF15|p.R407W|1|0.34|ENSG00000163884|chr3:126343759-126343759|G/A|missense_variant KLF15|p.R407W|1|0.34|ENSG00000163884|chr3:126343759-126343759|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 355.5158386230469 3 355.192957 1062.55704 NaN NaN NaN NaN NaN NaN NaN 16.014 1 14.798 14.298 15.298 -1.2159 0 0 0 0.19622 1 2500 2500 0.96228 0 1 53990 12005 35756 35777 52829 52829 0.02826492906274325 WSSTPAEP 8 Unmodified _WSSTPAEP_ 0 0 0 REV__nc|ENSG00000198055|P43250-2|GRK6 REV__nc|ENSG00000198055|P43250-2|GRK6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23553466796875 2 437.7007 873.386848 -0.22568 -9.8779E-05 0.36202 0.00015846 0.13634 5.9676E-05 437.70077490240396 78.999 0.9818 75.323 74.816 75.798 -3.676 50 27 2 0 0 0 0.58903 1 15055 15055 38.151 0 1 3533500 + 53991 24233 35757 35778 52830 52830 -0.054910428159928415 WSTRLKTP 8 Unmodified _WSTRLKTP_ 0 0 0 REV__ENST00000469423.1_1_19:12757375-12758379:-|nuORF REV__ENST00000469423.1_1_19:12757375-12758379:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.2274169921875 3 330.190665 987.550165 NaN NaN NaN NaN NaN NaN NaN 82.797 1 82.797 82.297 83.297 0 0 0 0 0.21486 1 16138 16138 1.6526 0 1 + 53992 22010 35758 35779 52831 52831 0.05589180025708629 WSTSCPTPSSA 11 Unmodified _WSTSCPTPSSA_ 0 0 0 ENST00000239223.3_1_5:172197231-172197828:-|nuORF ENST00000239223.3_1_5:172197231-172197828:-|nuORF ENST00000239223.3_1_5:172197231-172197828:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2054443359375 3 375.162335 1122.46517 0.089325 3.3512E-05 1.7463 0.00065515 1.8356 0.00068866 375.49700022753336 20.613 0.49107 19.217 18.863 19.354 -1.3966 15 13 2 0 0 0 0.96157 1 3437 3437 1.2148 0.588 1 551110 53993 8177 35759 35780 52832 52832 -0.09115978293061744 WSWGPSSK 8 Unmodified _WSWGPSSK_ 0 0 0 REV__ENSG00000103365|ENST00000309859|GGA2 REV__ENSG00000103365|ENST00000309859|GGA2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 312.1524658203125 3 312.152099 933.434466 NaN NaN NaN NaN NaN NaN NaN 91.209 1 87.284 86.784 87.784 -3.9251 0 0 0 0.21486 1 17852 17852 1.4819 0 1 + 53994 14878 35760 35781 52833 52833 -0.03491343825135118 WSWNKQFGSDQ 11 Unmodified _WSWNKQFGSDQ_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5296325683594 3 461.542314 1381.60511 NaN NaN NaN NaN NaN NaN NaN 58.579 1 58.579 58.079 59.079 0 0 0 0 0.23689 1 11214 11214 2.8433 0.21205 1 + 53995 19354 35761 35782 52834 52834 -0.07042477964341742 WSWPWGHSH 9 Unmodified _WSWPWGHSH_ 0 0 0 REV__ENST00000545182.6_1_12:113826794-113826863:+|nuORF REV__ENST00000545182.6_1_12:113826794-113826863:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2597045898438 2 590.259582 1178.50461 NaN NaN NaN NaN NaN NaN NaN 16.739 1 16.739 16.239 17.239 0 0 0 0 0.19635 1 2615 2615 0 0 1 + 53996 22886 35762 35783 52835 52835 -0.0775004543668274 WTAYVFTR 8 Unmodified _WTAYVFTR_ 0 0 0 REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2694091796875 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 170.3 1 165.51 165.01 166.01 -4.7898 0 0 0 0.22699 1 34553 34553 0.62683 0 1 + 53997 20117 35763 35784 52836 52836 0.004054911343473577 WTAYVFTR 8 Unmodified _WTAYVFTR_ 0 0 0 REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.271728515625 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 128.77 1 123.95 123.45 124.45 -4.817 0 0 0 0.21486 1 24719 24719 9.3474 0.75416 1 + 53998 20117 35763 35784 52837 52837 0.004054911343473577 WTAYVFTR 8 Unmodified _WTAYVFTR_ 0 0 0 REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2642822265625 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 135.32 1 130.42 129.92 130.92 -4.8951 0 0 0 0.23107 1 25993 25993 0.25148 0 1 + 53999 20117 35763 35784 52838 52838 0.004054911343473577 WTAYVFTR 8 Unmodified _WTAYVFTR_ 0 0 0 REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2704467773438 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 139.3 1 134.35 133.85 134.85 -4.952 0 0 0 0.23107 1 26795 26795 0.25148 0 1 + 54000 20117 35763 35784 52839 52839 0.004054911343473577 WTAYVFTR 8 Unmodified _WTAYVFTR_ 0 0 0 REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2675170898438 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 170.66 1 165.75 165.25 166.25 -4.9149 0 0 0 0.22692 1 33753 33753 0.25148 0 1 + 54001 20117 35763 35784 52840 52840 0.004054911343473577 WTAYVFTR 8 Unmodified _WTAYVFTR_ 0 0 0 REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2706298828125 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 172.11 1 167.22 166.72 167.72 -4.8977 0 0 0 0.23107 1 34126 34126 0.25148 0 1 + 54002 20117 35763 35784 52841 52841 0.004054911343473577 WTAYVFTR 8 Unmodified _WTAYVFTR_ 0 0 0 REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF REV__ENST00000253247.8_1_17:65730491-65732086:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2670288085938 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 171.22 1 166.35 165.85 166.85 -4.873 0 0 0 0.22647 1 33925 33925 0.25148 0 1 + 54003 20117 35763 35784 52842 52842 0.004054911343473577 WTDAEGYYRV 10 Unmodified _WTDAEGYYRV_ 0 0 0 PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant;PRPF4B|p.K780Nfs*13|4|0.31|ENSG00000112739|chr6:4052741-4052741|A/-|frameshift_variant;ENSG00000112739|ENST00000337659|PRPF4B;ENST00000463634.6_1_6:4041126-4056780:+|nuORF PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7594604492188 2 630.288202 1258.56185 0.97567 0.00061496 -0.34162 -0.00021532 0.63406 0.00039964 630.2879052002623 99.774 0.62862 95.641 95.302 95.931 -4.1326 34 17 3 0 0 0 0.072734 2 19595 19582;19595 74.2 57.257 1 2241000 54004 2708 35764 35785 52843;52844 52844 -0.05708667741623685 WTDAEGYYRV 10 Unmodified _WTDAEGYYRV_ 0 0 0 PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant;PRPF4B|p.K780Nfs*13|4|0.31|ENSG00000112739|chr6:4052741-4052741|A/-|frameshift_variant;ENSG00000112739|ENST00000337659|PRPF4B;ENST00000463634.6_1_6:4041126-4056780:+|nuORF PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7501831054688 2 630.288202 1258.56185 0.48646 0.00030661 -0.42296 -0.00026659 0.063504 4.0026E-05 630.2879478797742 99.828 0.53916 95.531 95.207 95.746 -4.297 26 15 2 0 0 0 0.086469 3 19095 19043;19095;19101 65.474 52.601 1 2248100 54005 2708 35764 35785 52845;52846;52847 52846 -0.05708667741623685 WTDAEGYYRV 10 Unmodified _WTDAEGYYRV_ 0 0 0 PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant;PRPF4B|p.K780Nfs*13|4|0.31|ENSG00000112739|chr6:4052741-4052741|A/-|frameshift_variant;ENSG00000112739|ENST00000337659|PRPF4B;ENST00000463634.6_1_6:4041126-4056780:+|nuORF PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant PRPF4B|p.Y781Ifs*3|2|0.35|ENSG00000112739|chr6:4052740-4052741|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.775634765625 2 630.288202 1258.56185 0.45259 0.00028526 0.046921 2.9574E-05 0.49952 0.00031484 630.2880211729698 99.402 0.6192 95.446 95.037 95.656 -3.9564 32 17 3 0 0 0 0.10926 2 19072 19072;19112 57.249 45.609 1 1667400 54006 2708 35764 35785 52848;52849 52848 -0.05708667741623685 WTDTFISAT 9 Unmodified _WTDTFISAT_ 0 0 0 REV__ENST00000486483.5_3_3:156413787-156421251:+|nuORF REV__ENST00000486483.5_3_3:156413787-156421251:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.281005859375 2 521.248015 1040.48148 0.2075 0.00010816 0.095791 4.9931E-05 0.30329 0.00015809 521.2480168686038 132.68 1.0511 132.68 132.23 133.28 0 68 29 3 0 0 0 0.55979 1 26273 26273 15.847 0 1 18413000 + 54007 22239 35765 35786 52850 52850 -0.03714529064677663 WTEHLYFRWRF 11 Unmodified _WTEHLYFRWRF_ 0 0 0 REV__nc|ENSG859|P60507|ERVFC1 REV__nc|ENSG859|P60507|ERVFC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.771240234375 3 547.608882 1639.80482 NaN NaN NaN NaN NaN NaN NaN 137.61 1 132.97 132.47 133.47 -4.6413 0 0 0 0.23698 1 27160 27160 0.094841 0.011491 1 + 54008 24336 35766 35787 52851 52851 0.010506217740385182 WTEHLYFRWRF 11 Unmodified _WTEHLYFRWRF_ 0 0 0 REV__nc|ENSG859|P60507|ERVFC1 REV__nc|ENSG859|P60507|ERVFC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7844848632812 3 547.608882 1639.80482 0.21114 0.00011562 -2.2223 -0.0012169 -2.0111 -0.0011013 547.9413441551214 160.72 0.10634 155.49 155.44 155.54 -5.2299 4 2 2 0 0 0 0.89134 1 31205 31205 0.026206 0 1 2204400 + 54009 24336 35766 35787 52852 52852 0.010506217740385182 WTEPWLMGLA 10 Unmodified _WTEPWLMGLA_ 0 0 0 nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18 nc|ENSG00000151353|Q96B42-2|TMEM18 nc|ENSG00000151353|Q96B42-2|TMEM18 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2789306640625 2 602.296985 1202.57942 NaN NaN NaN NaN NaN NaN NaN 74.596 1 71.232 70.732 71.732 -3.3643 0 0 0 2.8426 1 14554 14554 3.8763 3.7043 1 54010 4862 35767 35788 52853 52853 -0.013770437403081814 WTFKEWFWLER 11 Unmodified _WTFKEWFWLER_ 0 0 0 ENSG00000154227|ENST00000679737|CERS3 ENSG00000154227|ENST00000679737|CERS3 ENSG00000154227|ENST00000679737|CERS3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.77783203125 3 543.273388 1626.79833 0.55627 0.0003022 -4.2227 -0.0022941 -3.6665 -0.0019919 543.6065316933706 106.55 0.17673 106.55 106.43 106.61 0 6 4 2 0 0 0 0.89122 1 20942 20942 0.50596 0.33396 1 1318300 54011 5000 35768 35789 52854 52854 0.010006838226900072 WTFLESLKA 9 Unmodified _WTFLESLKA_ 0 0 0 ENST00000579224.5_1_17:18001659-18002970:+|nuORF ENST00000579224.5_1_17:18001659-18002970:+|nuORF ENST00000579224.5_1_17:18001659-18002970:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7874755859375 2 547.797675 1093.5808 NaN NaN NaN NaN NaN NaN NaN 163.7 1 158.63 158.13 159.13 -5.0648 0 0 0 0.19674 1 31865 31865 0.37959 0.1142 1 54012 11482 35769 35790 52855 52855 0.03774913620077314 WTGSWDPG 8 Unmodified _WTGSWDPG_ 0 0 0 ENST00000609502.1_1_10:42848398-42863266:-|nuORF ENST00000609502.1_1_10:42848398-42863266:-|nuORF ENST00000609502.1_1_10:42848398-42863266:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 454.197998046875 2 453.193042 904.371532 -0.33429 -0.0001515 0.74665 0.00033838 0.41236 0.00018688 453.19340983074784 19.79 0.82988 18.465 18.11 18.94 -1.3251 43 23 3 0 0 0 0.77935 1 3061 3061 5.2307 5.2307 1 1593000 54013 11769 35770 35791 52856 52856 -0.08447909613187221 WTLFHRANIS 10 Unmodified _WTLFHRANIS_ 0 0 0 nc|ENSG00000286105|A0A494BZU4|TMEM217B;ENST00000356757.6_1_6:37180235-37180745:-|nuORF nc|ENSG00000286105|A0A494BZU4|TMEM217B nc|ENSG00000286105|A0A494BZU4|TMEM217B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.778076171875 2 622.830372 1243.64619 NaN NaN NaN NaN NaN NaN NaN 135.57 1 130.74 130.24 131.24 -4.8307 0 0 0 0.22588 1 26102 26102 5.2969 0.76802 1 54014 8970 35771 35792 52857 52857 0.03411327865819658 WTLGRADP 8 Unmodified _WTLGRADP_ 0 0 0 ENST00000481499.5_1_6:43028115-43028307:+|nuORF ENST00000481499.5_1_6:43028115-43028307:+|nuORF ENST00000481499.5_1_6:43028115-43028307:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2299499511719 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 83.667 1 79.968 79.468 80.468 -3.6985 0 0 0 0.22681 1 15975 15975 3.5871 0 1 54015 10377 35772 35793 52858 52858 0.00036345066178000707 WTLLRPLPR 9 Unmodified _WTLLRPLPR_ 0 0 0 ENST00000278412.6_1_11:57100292-57100452:-|nuORF ENST00000278412.6_1_11:57100292-57100452:-|nuORF ENST00000278412.6_1_11:57100292-57100452:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3265380859375 2 576.356025 1150.6975 0.39832 0.00022957 1.5289 0.00088116 1.9272 0.0011107 576.8580148987706 119.57 0.31163 115.11 115.02 115.34 -4.467 10 8 2 0 0 0 0.65768 1 23021 23021 0 0 1 949160 54016 8432 35773 35794 52859 52859 0.1281769663050909 WTLVGAGA 8 Unmodified _WTLVGAGA_ 0 0 0 ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71234130859375 2 387.710871 773.407189 NaN NaN NaN NaN NaN NaN NaN 34.651 1 32.333 31.833 32.833 -2.3175 0 0 0 0.21486 1 6367 6367 5.7604 0 1 54017 4107 35774 35795 52860 52860 0.011421726344678973 WTLVGAGA 8 Unmodified _WTLVGAGA_ 0 0 0 ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.71173095703125 2 387.710871 773.407189 NaN NaN NaN NaN NaN NaN NaN 34.399 1 32.183 31.683 32.683 -2.2158 0 0 0 0.21486 1 6027 6027 5.7604 0 1 54018 4107 35774 35795 52861 52861 0.011421726344678973 WTMWHAPSY 9 Unmodified _WTMWHAPSY_ 0 0 0 REV__ENST00000504924.5_1_5:53182455-53182524:-|nuORF REV__ENST00000504924.5_1_5:53182455-53182524:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2581787109375 2 589.758027 1177.5015 0.73233 0.0004319 -0.0096031 -5.6635E-06 0.72273 0.00042623 589.7581822652946 106.33 0.27338 102.24 102.19 102.47 -4.0913 10 7 2 0 0 0 0.62102 1 20458 20458 11.64 2.2929 1 933750 + 54019 22471 35775 35796 52862 52862 -0.0801505660570001 WTPPLLVLTL 10 Unmodified _WTPPLLVLTL_ 0 0 0 nc|ENSG00000211657|A0A0A0MS00|IGLV3-32 nc|ENSG00000211657|A0A0A0MS00|IGLV3-32 nc|ENSG00000211657|A0A0A0MS00|IGLV3-32 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 384.8656921386719 3 384.905754 1151.69543 NaN NaN NaN NaN NaN NaN NaN 20.716 1 20.716 20.216 21.216 0 0 0 0 2.8426 1 3440 3440 0.043787 0 1 54020 12572 35776 35797 52863 52863 0.1256522310204673 WTRDVAGT 8 Unmodified _WTRDVAGT_ 0 0 0 ENST00000483825.5_1_1:167404631-167407856:-|nuORF;ENST00000392122.3_1_1:167403267-167407856:-|nuORF;ENST00000362089.9_1_1:167403267-167407856:-|nuORF ENST00000483825.5_1_1:167404631-167407856:-|nuORF ENST00000483825.5_1_1:167404631-167407856:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7492980957031 2 453.227417 904.44028 0.28585 0.00012955 -0.043429 -1.9683E-05 0.24242 0.00010987 453.2273531050962 36.158 0.88992 36.158 35.889 36.779 0 68 24 4 0 0 0 0.14223 1 6649 6649 54.774 2.5052 1 47443000 54021 9040 35777 35798 52864 52864 -0.01576245313481195 WTRDVAGT 8 Unmodified _WTRDVAGT_ 0 0 0 ENST00000483825.5_1_1:167404631-167407856:-|nuORF;ENST00000392122.3_1_1:167403267-167407856:-|nuORF;ENST00000362089.9_1_1:167403267-167407856:-|nuORF ENST00000483825.5_1_1:167404631-167407856:-|nuORF ENST00000483825.5_1_1:167404631-167407856:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 453.227417 904.44028 0.28585 0.00012955 -0.043429 -1.9683E-05 0.24242 0.00010987 453.2273531050962 36.158 0.88992 36.158 35.889 36.779 0 0.017286 -0.00030679 NaN 54.774 68 24 4 NaN NaN NaN NaN 0 NaN NaN 0 47443000 54022 9040 35777 35798 -0.01576245313481195 WTRDVAGT 8 Unmodified _WTRDVAGT_ 0 0 0 ENST00000483825.5_1_1:167404631-167407856:-|nuORF;ENST00000392122.3_1_1:167403267-167407856:-|nuORF;ENST00000362089.9_1_1:167403267-167407856:-|nuORF ENST00000483825.5_1_1:167404631-167407856:-|nuORF ENST00000483825.5_1_1:167404631-167407856:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 453.227417 904.44028 -0.42355 -0.00019196 0.67783 0.00030721 0.25428 0.00011525 453.22771702133247 38.688 1.0928 36.139 35.837 36.93 -2.5491 -0.0022438 0.000347 NaN 54.774 80 30 4 NaN NaN NaN NaN 0 NaN NaN 0 24540000 54023 9040 35777 35798 -0.01576245313481195 WTRDVAGT 8 Unmodified _WTRDVAGT_ 0 0 0 ENST00000483825.5_1_1:167404631-167407856:-|nuORF;ENST00000392122.3_1_1:167403267-167407856:-|nuORF;ENST00000362089.9_1_1:167403267-167407856:-|nuORF ENST00000483825.5_1_1:167404631-167407856:-|nuORF ENST00000483825.5_1_1:167404631-167407856:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 453.227417 904.44028 -0.00025125 -1.1388E-07 0.34036 0.00015426 0.34011 0.00015415 453.22754766447144 38.574 1.1511 36.132 35.81 36.961 -2.4419 -0.0091199 4.1103E-05 NaN 54.774 84 32 4 NaN NaN NaN NaN 0 NaN NaN 0 20198000 54024 9040 35777 35798 -0.01576245313481195 WTRDVAGT 8 Unmodified _WTRDVAGT_ 0 0 0 ENST00000483825.5_1_1:167404631-167407856:-|nuORF;ENST00000392122.3_1_1:167403267-167407856:-|nuORF;ENST00000362089.9_1_1:167403267-167407856:-|nuORF ENST00000483825.5_1_1:167404631-167407856:-|nuORF ENST00000483825.5_1_1:167404631-167407856:-|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 453.227417 904.44028 0.13299 6.0276E-05 0.21398 9.6983E-05 0.34698 0.00015726 453.22749376268945 38.54 1.0804 36.135 35.809 36.89 -2.4049 -0.0059224 -7.3455E-05 NaN 54.774 84 30 4 NaN NaN NaN NaN 0 NaN NaN 0 17433000 54025 9040 35777 35798 -0.01576245313481195 WTRLYRTR 8 Unmodified _WTRLYRTR_ 0 0 0 REV__ENST00000467204.1_1_1:155252337-155256975:+|nuORF REV__ENST00000467204.1_1_1:155252337-155256975:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3204956054688 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 128.09 1 128.09 127.59 128.59 0 0 0 0 0.2343 1 25295 25295 0.0082765 0 1 + 54026 16741 35778 35799 52865 52865 0.06666764931196667 WTRPSPYPLHQ 11 Unmodified _WTRPSPYPLHQ_ 0 0 0 FBXO42|p.W268Cfs*26|1|0.63|ENSG00000037637|chr1:16253695-16253696|-/CACTG|frameshift_variant;ENSG00000037637|ENST00000375592|FBXO42 FBXO42|p.W268Cfs*26|1|0.63|ENSG00000037637|chr1:16253695-16253696|-/CACTG|frameshift_variant FBXO42|p.W268Cfs*26|1|0.63|ENSG00000037637|chr1:16253695-16253696|-/CACTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 461.5296936035156 3 461.238566 1380.69387 NaN NaN NaN NaN NaN NaN NaN 138.93 1 133.98 133.48 134.48 -4.952 0 0 0 0.22632 1 26722 26722 3.0723 2.9774 1 54027 1178 35779 35800 52866 52866 0.018749820659877514 WTRSQPFTLQD 11 Unmodified _WTRSQPFTLQD_ 0 0 0 MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1 MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.23187255859375 3 460.229848 1377.66771 NaN NaN NaN NaN NaN NaN NaN 72.249 1 72.249 71.749 72.749 0 0 0 0 0.22632 1 14006 14006 3.0723 3.0285 1 54028 2672 35780 35801 52867 52867 -0.006013318961322511 WTSKRYLIG 9 Unmodified _WTSKRYLIG_ 0 0 0 REV__ENST00000298569.8_1_5:175782728-175786816:-|nuORF REV__ENST00000298569.8_1_5:175782728-175786816:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2115173339844 3 375.213469 1122.61858 NaN NaN NaN NaN NaN NaN NaN 15.269 1 13.916 13.416 14.416 -1.3534 0 0 0 0.1963 1 2091 2091 0 0 1 + 54029 20386 35781 35802 52868 52868 0.06217424605551969 WTTVPSISA 9 Unmodified _WTTVPSISA_ 0 0 0 REV__ENST00000372600.8_1_9:131679857-131680115:+|nuORF REV__ENST00000372600.8_1_9:131679857-131680115:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2506103515625 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 44.451 1 44.451 43.951 44.951 0 0 0 0 0.20628 1 8341 8341 21.747 0 1 + 54030 21028 35782 35803 52869 52869 0.009820786605587273 WTVDVTHGK 9 Unmodified _WTVDVTHGK_ 0 0 0 CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;CSMD3|p.G3063Rfs*5|1|0.06|ENSG00000164796|chr8:112287208-112287209|-/G|frameshift_variant;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;CSMD3|p.A3641Cfs*13|1|0.36|ENSG00000164796|chr8:112228799-112228800|-/A|frameshift_variant;nc|ENSG00000164796|Q7Z407-2|CSMD3;CSMD3|p.F3640Lfs*61|7|0.35|ENSG00000164796|chr8:112228800-112228800|A/-|frameshift_variant;ENSG00000164796|ENST00000297405|CSMD3;CSMD3|p.L2190Yfs*46|1|0.29|ENSG00000164796|chr8:112341560-112341560|A/-|frameshift_variant CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant CSMD3|p.S2534Ifs*8|1|0.04|ENSG00000164796|chr8:112314002-112314003|-/GACACTAT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.28173828125 2 521.769448 1041.52434 0.23045 0.00012024 -0.5389 -0.00028118 -0.30845 -0.00016094 521.7691789782747 30.95 0.6599 30.95 30.693 31.353 0 35 18 2 0 0 0 0.55979 1 5537 5537 15.847 1.9411 1 4546700 54031 729 35783 35804 52870 52870 0.005242857834218739 WTWLKEFYQRL 11 Unmodified _WTWLKEFYQRL_ 0 0 0 nc|ENSG00000107938|Q3B7T1-4|EDRF1;EDRF1|p.L658Ffs*26|1|0.2|ENSG00000107938|chr10:125738432-125738433|-/T|frameshift_variant;nc|ENSG00000107938|Q3B7T1-3|EDRF1;ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1 nc|ENSG00000107938|Q3B7T1-4|EDRF1 nc|ENSG00000107938|Q3B7T1-4|EDRF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3944091796875 2 785.414269 1568.81398 NaN NaN NaN NaN NaN NaN NaN 113.91 1 109.6 109.1 110.1 -4.3136 0 0 0 0.22632 1 21941 21941 0.00056442 0 1 54032 916 35784 35805 52871 52871 0.052329703397390404 WVCDDDADCSD 11 Unmodified _WVCDDDADCSD_ 0 0 0 VLDLR|p.P558Wfs*8|1|0.03|ENSG00000147852|chr9:2646519-2646520|-/ATGGACTTTTT|frameshift_variant;nc|ENSG00000147852|P98155-2|VLDLR;ENSG00000147852|ENST00000382100|VLDLR VLDLR|p.P558Wfs*8|1|0.03|ENSG00000147852|chr9:2646519-2646520|-/ATGGACTTTTT|frameshift_variant VLDLR|p.P558Wfs*8|1|0.03|ENSG00000147852|chr9:2646519-2646520|-/ATGGACTTTTT|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7626342773438 2 622.197535 1242.38052 0.39856 0.00024798 0.0053544 3.3315E-06 0.40392 0.00025132 622.197302628397 133.98 0.10332 133.98 133.9 134.01 0 4 2 2 0 0 0 0.89136 1 26519 26519 0 0 1 2412200 54033 4718 35785 35806 52872 52872 -0.23097716891993514 WVEADPGLR 9 Unmodified _WVEADPGLR_ 0 0 0 ENSG00000183196|ENST00000332272|CHST6 ENSG00000183196|ENST00000332272|CHST6 ENSG00000183196|ENST00000332272|CHST6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2709350585938 2 521.769448 1041.52434 0.018118 9.4532E-06 -0.44103 -0.00023012 -0.42291 -0.00022066 521.769200241457 70.613 1.3677 70.613 69.672 71.039 0 79 38 3 0 0 0 0.35556 1 13562 13562 12.241 0 1 12633000 54034 6833 35786 35807 52873 52873 0.005242857833991366 WVESVLKQY 9 Unmodified _WVESVLKQY_ 0 0 0 REV__ENSG00000136878|ENST00000372429|USP20 REV__ENSG00000136878|ENST00000372429|USP20 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3311767578125 2 576.308406 1150.60226 NaN NaN NaN NaN NaN NaN NaN 40.909 1 38.419 37.919 38.919 -2.4896 0 0 0 0.19636 1 7334 7334 2.4985 0 1 + 54035 16359 35787 35808 52874 52874 0.032982986488150345 WVEVMRAA 8 Unmodified _WVEVMRAA_ 0 0 0 TEX38|p.L165Cfs*2|1|0.63|ENSG00000186118|chr1:46673322-46673322|C/-|frameshift_variant;ENSG00000186118|ENST00000334122|TEX38 TEX38|p.L165Cfs*2|1|0.63|ENSG00000186118|chr1:46673322-46673322|C/-|frameshift_variant TEX38|p.L165Cfs*2|1|0.63|ENSG00000186118|chr1:46673322-46673322|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2482604980469 2 481.249837 960.485122 -0.20207 -9.7244E-05 1.5963 0.00076822 1.3942 0.00067098 481.25043966390695 40.346 2.7967 37.711 36.668 39.465 -2.6348 161 79 4 0 0 0 8448 1 7771 7771 10.074 9.1988 1 85144000 54036 7035 35788 35809 52875 52875 0.0032986222820454714 WVEVMRAA 8 Unmodified _WVEVMRAA_ 0 0 0 TEX38|p.L165Cfs*2|1|0.63|ENSG00000186118|chr1:46673322-46673322|C/-|frameshift_variant;ENSG00000186118|ENST00000334122|TEX38 TEX38|p.L165Cfs*2|1|0.63|ENSG00000186118|chr1:46673322-46673322|C/-|frameshift_variant TEX38|p.L165Cfs*2|1|0.63|ENSG00000186118|chr1:46673322-46673322|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2482604980469 2 481.249837 960.485122 0.021637 1.0413E-05 1.4834 0.00071387 1.505 0.00072429 481.2503997935835 40.302 3.026 37.762 36.657 39.683 -2.5398 141 85 2 0 0 0 8448 1 7463 7463 14.838 14.322 1 101380000 54037 7035 35788 35809 52876 52876 0.0032986222820454714 WVEYYRRWERY 11 Unmodified _WVEYYRRWERY_ 0 0 0 REV__ENSG00000118017|ENST00000236709|A4GNT REV__ENSG00000118017|ENST00000236709|A4GNT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 569.2217407226562 3 569.279313 1704.81611 NaN NaN NaN NaN NaN NaN NaN 170.14 1 165.26 164.76 165.76 -4.873 0 0 0 0.22632 1 33651 33651 0 0 1 + 54038 15536 35789 35810 52877 52877 -0.008106009224547961 WVFIIIKK 8 Unmodified _WVFIIIKK_ 0 0 0 REV__ENSG00000174417|ENST00000518632|TRHR REV__ENSG00000174417|ENST00000518632|TRHR MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.699462890625 2 523.841688 1045.66882 NaN NaN NaN NaN NaN NaN NaN 123.01 1 118.43 117.93 118.93 -4.5757 0 0 0 0.21486 1 24250 24250 0.79363 0 1 + 54039 18412 35790 35811 52878 52878 0.14781579001373757 WVGNCQAEEAP 11 Unmodified _WVGNCQAEEAP_ 0 0 0 ENST00000553259.1_1_12:49686512-49686761:-|nuORF ENST00000553259.1_1_12:49686512-49686761:-|nuORF ENST00000553259.1_1_12:49686512-49686761:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.27783203125 2 602.258588 1202.50262 NaN NaN NaN NaN NaN NaN NaN 145.35 1 145.35 144.85 145.85 0 0 0 0 0.23199 1 29046 29046 6.7232 1.8262 1 54040 11205 35791 35812 52879 52879 -0.09052887027451106 WVHRQNYRWER 11 Unmodified _WVHRQNYRWER_ 0 0 0 REV__ENST00000432815.2_1_1:173332252-173332432:-|nuORF REV__ENST00000432815.2_1_1:173332252-173332432:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.382080078125 2 815.410914 1628.80728 NaN NaN NaN NaN NaN NaN NaN 168.66 1 163.79 163.29 164.29 -4.873 0 0 0 0.23698 1 33260 33260 0.86438 0.59536 1 + 54041 21635 35792 35813 52880 52880 0.018024702317234187 WVHYRPCEEHQ 11 Unmodified _WVHYRPCEEHQ_ 0 0 0 ENST00000350878.8_1_2:102440511-102446033:+|nuORF ENST00000350878.8_1_2:102440511-102446033:+|nuORF ENST00000350878.8_1_2:102440511-102446033:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3775634765625 2 742.33041 1482.64627 NaN NaN NaN NaN NaN NaN NaN 169.89 1 164.96 164.46 165.46 -4.9295 0 0 0 0.22632 1 33568 33568 0.026206 0.025642 1 54042 8925 35793 35814 52881 52881 -0.07575040196502414 WVIQERKM 8 Unmodified _WVIQERKM_ 0 0 0 PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 545.2965087890625 2 545.297319 1088.58008 NaN NaN NaN NaN NaN NaN NaN 178.34 1 178.34 177.84 178.84 0 0 0 0 0.2396 1 36947 36947 0.0082765 0 1 54043 12821 35794 35815 52882 52882 0.0393379569939043 WVKKRALVQI 10 Unmodified _WVKKRALVQI_ 0 0 0 REV__TEAD3|p.R103W|1|0.26|ENSG00000007866|chr6:35480335-35480335|G/A|missense_variant REV__TEAD3|p.R103W|1|0.26|ENSG00000007866|chr6:35480335-35480335|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 414.248779296875 3 414.267797 1239.78156 NaN NaN NaN NaN NaN NaN NaN 74.967 1 71.603 71.103 72.103 -3.3643 0 0 0 0.22588 1 14631 14631 1.9064 1.4004 1 + 54044 24782 35795 35816 52883 52883 0.1712622772740815 WVKKRALVQI 10 Unmodified _WVKKRALVQI_ 0 0 0 REV__TEAD3|p.R103W|1|0.26|ENSG00000007866|chr6:35480335-35480335|G/A|missense_variant REV__TEAD3|p.R103W|1|0.26|ENSG00000007866|chr6:35480335-35480335|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 414.26959228515625 3 414.267797 1239.78156 NaN NaN NaN NaN NaN NaN NaN 122.4 1 117.87 117.37 118.37 -4.5305 0 0 0 0.22588 1 23564 23564 1.9064 0.83491 1 + 54045 24782 35795 35816 52884 52884 0.1712622772740815 WVKWWWAYWRQ 11 Unmodified _WVKWWWAYWRQ_ 0 0 0 REV__NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant REV__NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 565.3742065429688 3 565.617489 1693.83064 0.29171 0.000165 3.2804 0.0018555 3.5721 0.0020205 565.6193107795518 166.44 0.172 166.44 166.37 166.54 0 6 4 2 0 0 0 0.89136 1 33886 33886 0 0 1 61875000 + 54046 23914 35796 35817 52885 52885 0.011475160163399778 WVLEHNKR 8 Unmodified _WVLEHNKR_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 361.0257568359375 3 361.201564 1080.58286 -0.91561 -0.00033072 -0.30356 -0.00010965 -1.2192 -0.00044037 361.2006517579085 14.518 0.17148 13.404 13.297 13.468 -1.1142 11 4 3 0 0 0 1.0268 1 2187 2187 1.8442 0 1 209010 + 54047 18334 35797 35818 52886 52886 0.04579387148532987 WVLEHNKR 8 Unmodified _WVLEHNKR_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 361.201564 1080.58286 -0.35981 -0.00012996 -0.24753 -8.9409E-05 -0.60734 -0.00021937 361.53626779929084 13.753 0.14125 13.753 13.65 13.792 0 0.25322 -0.0008776 NaN 1.8442 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 322650 + 54048 18334 35797 35818 0.04579387148532987 WVLEHNKR 8 Unmodified _WVLEHNKR_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-1|PARP14 REV__nc|ENSG00000173193|Q460N5-1|PARP14 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 361.201564 1080.58286 -2.2953 -0.00082906 2.0131 0.00072714 -0.28218 -0.00010192 361.8719346195155 14.554 0.16959 13.344 13.246 13.415 -1.2106 -0.15657 0.001572 NaN 1.8442 10 4 3 NaN NaN NaN NaN 0 NaN NaN 0 267410 + 54049 18334 35797 35818 0.04579387148532987 WVLKGARRGS 10 Unmodified _WVLKGARRGS_ 0 0 0 REV__ENST00000436008.6_1_6:3270099-3270333:-|nuORF REV__ENST00000436008.6_1_6:3270099-3270333:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 377.22344970703125 3 377.22448 1128.65161 NaN NaN NaN NaN NaN NaN NaN 27.192 1 25.27 24.77 25.77 -1.9222 0 0 0 2.8426 1 4534 4534 3.8763 1.3778 1 + 54050 21665 35798 35819 52887 52887 0.0924305144826576 WVLLVRGVH 9 Unmodified _WVLLVRGVH_ 0 0 0 ENST00000354266.7_1_17:30469621-30498085:+|nuORF ENST00000354266.7_1_17:30469621-30498085:+|nuORF ENST00000354266.7_1_17:30469621-30498085:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.217041015625 3 360.222188 1077.64473 NaN NaN NaN NaN NaN NaN NaN 34.934 1 32.54 32.04 33.04 -2.3938 0 0 0 0.23508 1 6426 6426 1.1933 0 1 54051 8940 35799 35820 52888 52888 0.109017385676907 WVPRPLTLI 9 Unmodified _WVPRPLTLI_ 0 0 0 REV__CASS4|p.R163W|1|0.51|ENSG00000087589|chr20:56445927-56445927|C/T|missense_variant REV__CASS4|p.R163W|1|0.51|ENSG00000087589|chr20:56445927-56445927|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7799682617188 2 547.839677 1093.6648 NaN NaN NaN NaN NaN NaN NaN 144.14 1 139.2 138.7 139.7 -4.9445 0 0 0 0.19624 1 27833 27833 0.0033805 0 1 + 54052 13270 35800 35821 52889 52889 0.12171489507659317 WVPSRYRWKQR 11 Unmodified _WVPSRYRWKQR_ 0 0 0 MCCC2|p.F347Vfs*33|1|0.09|ENSG00000131844|chr5:71641039-71641040|-/A|frameshift_variant MCCC2|p.F347Vfs*33|1|0.09|ENSG00000131844|chr5:71641039-71641040|-/A|frameshift_variant MCCC2|p.F347Vfs*33|1|0.09|ENSG00000131844|chr5:71641039-71641040|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 391.2174072265625 4 391.217926 1560.8426 -0.14842 -5.8066E-05 -1.0458 -0.00040915 -1.1943 -0.00046722 391.2174675815259 32.095 0.55247 29.946 29.654 30.207 -2.1483 29 15 2 0 0 0 0.66242 1 5512 5512 0.026206 0 1 1975600 54053 12116 35801 35822 52890 52890 0.08461132759543943 WVPVHPPP 8 Unmodified _WVPVHPPP_ 0 0 0 ENST00000369660.8_1_X:153712793-153712919:-|nuORF ENST00000369660.8_1_X:153712793-153712919:-|nuORF ENST00000369660.8_1_X:153712793-153712919:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.164794921875 3 310.172834 927.496673 NaN NaN NaN NaN NaN NaN NaN 176.65 1 171.86 171.36 172.36 -4.7898 0 0 0 0.21486 1 36124 36124 0.45834 0 1 54054 9125 35802 35823 52891 52891 0.030024273138451463 WVPVIAWP 8 Unmodified _WVPVIAWP_ 0 0 0 REV__ENST00000463516.5_1_7:45006053-45008547:-|nuORF REV__ENST00000463516.5_1_7:45006053-45008547:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.1847839355469 3 323.184851 966.532724 NaN NaN NaN NaN NaN NaN NaN 4.0142 1 4.0142 3.5142 4.5142 0 0 0 0 0.21486 1 3 3 0 0 1 + 54055 21921 35803 35824 52892 52892 0.0481188449068668 WVQDPFRF 8 Unmodified _WVQDPFRF_ 0 0 0 REV__ENSG00000185504|ENST00000327787|FAAP100 REV__ENSG00000185504|ENST00000327787|FAAP100 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 366.5052490234375 3 365.518781 1093.53451 -0.42559 -0.00015556 -0.52533 -0.00019202 -0.95092 -0.00034758 365.51863658358735 41.715 3.3038 39.08 37.121 40.424 -2.6348 292 93 4 0 0 0 8448 1 7942 7942 10.074 0 1 63735000 + 54056 18972 35804 35825 52893 52893 -0.008511064913591326 WVQHFHGAP 9 Unmodified _WVQHFHGAP_ 0 0 0 REV__CTBS|p.I336Pfs*5|1|0.06|ENSG00000117151|chr1:84555151-84555152|-/GTGGG|frameshift_variant REV__CTBS|p.I336Pfs*5|1|0.06|ENSG00000117151|chr1:84555151-84555152|-/GTGGG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2069396972656 3 360.178759 1077.51445 NaN NaN NaN NaN NaN NaN NaN 25.088 1 23.234 22.734 23.734 -1.8534 0 0 0 0.23508 1 4107 4107 5.7319 2.1448 1 + 54057 13601 35805 35826 52894 52894 -0.02120857431305012 WVRAEEEIEVL 11 Unmodified _WVRAEEEIEVL_ 0 0 0 ENST00000467994.1_1_3:120160167-120169791:-|nuORF ENST00000467994.1_1_3:120160167-120169791:-|nuORF ENST00000467994.1_1_3:120160167-120169791:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2244873046875 3 458.241753 1371.70343 NaN NaN NaN NaN NaN NaN NaN 29.145 1 27.189 26.689 27.689 -1.9561 0 0 0 0.22632 1 5236 5236 3.0723 1.6171 1 54058 10159 35806 35827 52895 52895 0.03244705560859984 WVRSSDLG 8 Unmodified _WVRSSDLG_ 0 0 0 ENST00000469878.5_1_1:155100369-155106166:+|nuORF ENST00000469878.5_1_1:155100369-155106166:+|nuORF ENST00000469878.5_1_1:155100369-155106166:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2336730957031 2 460.235242 918.45593 NaN NaN NaN NaN NaN NaN NaN 175.13 1 170.24 169.74 170.74 -4.8916 0 0 0 0.21486 1 34904 34904 2.5775 0.27475 1 54059 10188 35807 35828 52896 52896 -0.006559587964261482 WVSKHAQDF 9 Unmodified _WVSKHAQDF_ 0 0 0 ENSG00000113319|ENST00000265080|RASGRF2 ENSG00000113319|ENST00000265080|RASGRF2 ENSG00000113319|ENST00000265080|RASGRF2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 373.1857604980469 3 373.185691 1116.53524 NaN NaN NaN NaN NaN NaN NaN 64.046 1 60.789 60.289 61.289 -3.2567 0 0 0 0.23508 1 12020 12020 1.0715 0.29493 1 54060 2737 35808 35829 52897 52897 -0.018363118422939806 WVTKNLEQRYF 11 Unmodified _WVTKNLEQRYF_ 0 0 0 REV__ENSG00000185386|ENST00000330651|MAPK11 REV__ENSG00000185386|ENST00000330651|MAPK11 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3901977539062 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 121.38 1 121.38 120.88 121.88 0 0 0 0 0.22632 1 23928 23928 0.03141 0.0052036 1 + 54061 18964 35809 35830 52898 52898 0.039878069259884796 WVTKNLEQRYF 11 Unmodified _WVTKNLEQRYF_ 0 0 0 REV__ENSG00000185386|ENST00000330651|MAPK11 REV__ENSG00000185386|ENST00000330651|MAPK11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3906860351562 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 149.18 1 144.46 143.96 144.96 -4.7153 0 0 0 0.22632 1 29627 29627 0.172 0.14059 1 + 54062 18964 35809 35830 52899 52899 0.039878069259884796 WVTKNLEQRYF 11 Unmodified _WVTKNLEQRYF_ 0 0 0 REV__ENSG00000185386|ENST00000330651|MAPK11 REV__ENSG00000185386|ENST00000330651|MAPK11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3906860351562 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 54.358 1 51.221 50.721 51.721 -3.1377 0 0 0 0.22632 1 10058 10058 0.172 0.14579 1 + 54063 18964 35809 35830 52900 52900 0.039878069259884796 WVTKNLEQRYF 11 Unmodified _WVTKNLEQRYF_ 0 0 0 REV__ENSG00000185386|ENST00000330651|MAPK11 REV__ENSG00000185386|ENST00000330651|MAPK11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3906860351562 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 54.377 1 51.24 50.74 51.74 -3.1377 0 0 0 0.23379 1 10061 10061 5.2969 1.7004 1 + 54064 18964 35809 35830 52901 52901 0.039878069259884796 WVTKNLEQRYF 11 Unmodified _WVTKNLEQRYF_ 0 0 0 REV__ENSG00000185386|ENST00000330651|MAPK11 REV__ENSG00000185386|ENST00000330651|MAPK11 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3884887695312 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 149.6 1 144.48 143.98 144.98 -5.1204 0 0 0 0.22632 1 28990 28990 0.026206 0 1 + 54065 18964 35809 35830 52902 52902 0.039878069259884796 WVTVESDQ 8 Unmodified _WVTVESDQ_ 0 0 0 REV__MPPED1|p.R202W|1|0.14|ENSG00000186732|chr22:43474933-43474933|C/T|missense_variant REV__MPPED1|p.R202W|1|0.14|ENSG00000186732|chr22:43474933-43474933|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7818603515625 2 482.224539 962.434526 0.035371 1.7057E-05 -1.1067 -0.0005337 -1.0714 -0.00051664 482.2242153237857 83.352 0.49319 79.744 79.377 79.87 -3.6079 14 13 2 0 0 0 0.93477 1 16233 16233 24.674 1.5255 1 712940 + 54066 23875 35810 35831 52903 52903 -0.048193886158060195 WVTVNFLT 8 Unmodified _WVTVNFLT_ 0 0 0 ENSG00000187097|ENST00000334696|ENTPD5 ENSG00000187097|ENST00000334696|ENTPD5 ENSG00000187097|ENST00000334696|ENTPD5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26495361328125 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 65.875 1 62.417 61.917 62.917 -3.4581 0 0 0 0.23312 1 12337 12337 6.2058 0 1 54067 7094 35811 35832 52904 52904 0.02734972902840127 WVVFFIAA 8 Unmodified _WVVFFIAA_ 0 0 0 REV__SLC28A3|p.S494Ffs*21|1|0.4|ENSG00000197506|chr9:84285511-84285512|-/A|frameshift_variant REV__SLC28A3|p.S494Ffs*21|1|0.4|ENSG00000197506|chr9:84285511-84285512|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 318.1703796386719 3 318.181218 951.521825 NaN NaN NaN NaN NaN NaN NaN 20.995 1 20.995 20.495 21.495 0 0 0 0 0.21486 1 3497 3497 0 0 1 + 54068 19343 35812 35833 52905 52905 0.0441248211641323 WVVLPIVITL 10 Unmodified _WVVLPIVITL_ 0 0 0 ENST00000432401.5_1_3:10067730-10067880:-|nuORF ENST00000432401.5_1_3:10067730-10067880:-|nuORF ENST00000432401.5_1_3:10067730-10067880:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 384.91571044921875 3 384.917882 1151.73182 NaN NaN NaN NaN NaN NaN NaN 71.248 1 71.248 70.748 71.748 0 0 0 0 2.8426 1 13802 13802 0.20733 0 1 54069 9797 35813 35834 52906 52906 0.1620209999873623 WVVVIILI 8 Unmodified _WVVVIILI_ 0 0 0 XK|p.N244S|1|0.87|ENSG00000047597|chrX:37727858-37727858|A/G|missense_variant;ENSG00000047597|ENST00000378616|XK XK|p.N244S|1|0.87|ENSG00000047597|chrX:37727858-37727858|A/G|missense_variant XK|p.N244S|1|0.87|ENSG00000047597|chrX:37727858-37727858|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.2349548339844 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 4.1226 1 3.0826 2.5826 3.5826 -1.04 0 0 0 0.21486 1 30 30 0 0 1 54070 1217 35814 35835 52907 52907 0.15270487735767801 WVVWVMKEFSM 11 Unmodified _WVVWVMKEFSM_ 0 0 0 ENSG00000154727|ENST00000400075|GABPA;ENST00000419271.1_1_7:63353684-63354623:+|nuORF ENSG00000154727|ENST00000400075|GABPA ENSG00000154727|ENST00000400075|GABPA MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2380676269531 3 481.23841 1440.6934 0.28127 0.00013536 -1.2427 -0.00059801 -0.96139 -0.00046266 481.23787506293263 105.02 0.34295 105.02 104.83 105.17 0 13 9 2 0 0 0 0.65515 1 20657 20657 3.0723 1.6648 1 1812900 54071 5022 35815 35836 52908 52908 -0.009318969697460489 WVYKRAKK 8 Unmodified _WVYKRAKK_ 0 0 0 tr|U7SSN9|U7SSN9_FUSNU3-deoxy-manno-octulosonatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsBPE=3SV=1 tr|U7SSN9|U7SSN9_FUSNU3-deoxy-manno-octulosonatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsBPE=3SV=1 tr|U7SSN9|U7SSN9_FUSNU3-deoxy-manno-octulosonatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2053527832031 3 360.222188 1077.64473 NaN NaN NaN NaN NaN NaN NaN 31.604 1 29.373 28.873 29.873 -2.2305 0 0 0 0.21486 1 5740 5740 1.8442 0.6509 1 54072 26109 35816 35837 52909 52909 0.109017385676907 WVYKRAKK 8 Unmodified _WVYKRAKK_ 0 0 0 tr|U7SSN9|U7SSN9_FUSNU3-deoxy-manno-octulosonatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsBPE=3SV=1 tr|U7SSN9|U7SSN9_FUSNU3-deoxy-manno-octulosonatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsBPE=3SV=1 tr|U7SSN9|U7SSN9_FUSNU3-deoxy-manno-octulosonatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsBPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2011413574219 3 360.222188 1077.64473 NaN NaN NaN NaN NaN NaN NaN 34.731 1 32.454 31.954 32.954 -2.2766 0 0 0 0.21486 1 6093 6093 0.45834 0.18932 1 54073 26109 35816 35837 52910 52910 0.109017385676907 WVYNKGLDA 9 Unmodified _WVYNKGLDA_ 0 0 0 ENST00000398343.2_2_21:43934703-43935044:+|nuORF ENST00000398343.2_2_21:43934703-43935044:+|nuORF ENST00000398343.2_2_21:43934703-43935044:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.26953125 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 132.46 1 127.61 127.11 128.11 -4.8527 0 0 0 0.23508 1 25442 25442 10.074 0 1 54074 9482 35817 35838 52911 52911 -0.0005883007379452465 WWAQRRRW 8 Unmodified _WWAQRRRW_ 0 0 0 KIAA1522|p.P976Hfs*70|2|0.39|ENSG00000162522|chr1:32772278-32772278|C/-|frameshift_variant KIAA1522|p.P976Hfs*70|2|0.39|ENSG00000162522|chr1:32772278-32772278|C/-|frameshift_variant KIAA1522|p.P976Hfs*70|2|0.39|ENSG00000162522|chr1:32772278-32772278|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7705078125 2 622.83104 1243.64753 NaN NaN NaN NaN NaN NaN NaN 111 1 111 110.5 111.5 0 0 0 0 0.21486 1 21834 21834 5.2307 1.2863 1 54075 11994 35818 35839 52912 52912 0.03545006745207502 WWCIWWRQELP 11 Unmodified _WWCIWWRQELP_ 0 0 0 REV__PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant REV__PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 534.9384765625 3 534.927335 1601.76017 NaN NaN NaN NaN NaN NaN NaN 150.46 1 145.72 145.22 146.22 -4.7323 0 0 0 0.23698 1 29883 29883 0.094841 0 1 + 54076 24435 35819 35840 52913 52913 -0.016635253636195557 WWCRFFGVGC 10 Unmodified _WWCRFFGVGC_ 0 0 0 REV__ENST00000549804.6_1_15:25336847-25342514:+|nuORF REV__ENST00000549804.6_1_15:25336847-25342514:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7758178710938 2 630.775696 1259.53684 NaN NaN NaN NaN NaN NaN NaN 179.25 1 179.25 178.75 179.75 0 0 0 0 0.22588 1 37132 37132 0 0 1 + 54077 22921 35820 35841 52914 52914 -0.08254717349541352 WWEDCRTSY 9 Unmodified _WWEDCRTSY_ 0 0 0 FOLR3|p.A173Pfs*61|1|0.43|ENSG00000110203|chr11:72139607-72139607|G/-|frameshift_variant;ENSG00000110203|ENST00000611028|FOLR3;ENSG00000110195|ENST00000393676|FOLR1 FOLR3|p.A173Pfs*61|1|0.43|ENSG00000110203|chr11:72139607-72139607|G/-|frameshift_variant FOLR3|p.A173Pfs*61|1|0.43|ENSG00000110203|chr11:72139607-72139607|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7733764648438 2 623.253305 1244.49206 0.81168 0.00050588 0.86038 0.00053624 1.6721 0.0010421 623.2538889529874 42.098 0.41486 39.378 39.14 39.555 -2.7191 17 11 2 0 0 0 0.65202 1 7873 7873 0.96228 0.95632 1 1212000 54078 2569 35821 35842 52915 52915 -0.12040869681891309 WWEDCRTSY 9 Unmodified _WWEDCRTSY_ 0 0 0 FOLR3|p.A173Pfs*61|1|0.43|ENSG00000110203|chr11:72139607-72139607|G/-|frameshift_variant;ENSG00000110203|ENST00000611028|FOLR3;ENSG00000110195|ENST00000393676|FOLR1 FOLR3|p.A173Pfs*61|1|0.43|ENSG00000110203|chr11:72139607-72139607|G/-|frameshift_variant FOLR3|p.A173Pfs*61|1|0.43|ENSG00000110203|chr11:72139607-72139607|G/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 623.253305 1244.49206 0.17503 0.00010909 1.3596 0.0008474 1.5347 0.00095648 623.2540588549198 41.882 0.46525 39.231 39.035 39.5 -2.651 -0.073571 0.00031094 NaN 0.96228 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 749810 54079 2569 35821 35842 -0.12040869681891309 WWFAKLLKRWL 11 Unmodified _WWFAKLLKRWL_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 387.7085876464844 4 387.481592 1545.89726 -0.15972 -6.1887E-05 0.80642 0.00031247 0.6467 0.00025058 387.73265653134877 17.814 0.22209 17.814 17.693 17.915 0 10 5 3 0 0 0 0.96225 1 2855 2855 0.45452 0.45452 1 630450 + 54080 14875 35822 35843 52916 52916 0.1461475157825589 WWFAKLLKRWL 11 Unmodified _WWFAKLLKRWL_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 4 387.481592 1545.89726 -0.094756 -3.6716E-05 0.052967 2.0524E-05 -0.041788 -1.6192E-05 387.7321322529735 19.371 0.25341 17.974 17.884 18.137 -1.3966 0.028867 -0.001128 NaN 0.45452 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 547050 + 54081 14875 35822 35843 0.1461475157825589 WWFAKLLKRWL 11 Unmodified _WWFAKLLKRWL_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 4 387.481592 1545.89726 -0.3279 -0.00012706 0.49002 0.00018987 0.16211 6.2816E-05 387.48165349465984 19.285 0.20999 17.96 17.827 18.037 -1.3251 0.014884 -0.00045058 NaN 0.45452 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 717910 + 54082 14875 35822 35843 0.1461475157825589 WWFAKLLKRWL 11 Unmodified _WWFAKLLKRWL_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 4 387.481592 1545.89726 -1.6257 -0.00062994 1.9142 0.0007417 0.28845 0.00011177 387.4822712047108 19.668 0.20448 18.033 17.878 18.083 -1.6351 0.087698 0.0017567 NaN 0.45452 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 478220 + 54083 14875 35822 35843 0.1461475157825589 WWGPETGV 8 Unmodified _WWGPETGV_ 0 0 0 REV__TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant REV__TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.12396240234375 3 311.148466 930.423567 NaN NaN NaN NaN NaN NaN NaN 88.828 1 88.828 88.328 89.328 0 0 0 0 0.21486 1 17341 17341 0.45834 0 1 + 54084 24812 35823 35844 52917 52917 -0.0444274619941325 WWHKIRLHCRS 11 Unmodified _WWHKIRLHCRS_ 0 0 0 REV__ENST00000515773.5_1_6:43152048-43164205:+|nuORF REV__ENST00000515773.5_1_6:43152048-43164205:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2046203613281 4 381.205662 1520.79354 -0.26857 -0.00010238 -0.4348 -0.00016575 -0.70336 -0.00026813 381.4572114604191 91.472 1.1336 87.547 86.724 87.857 -3.9251 48 32 2 0 0 0 0.82392 1 17869 17869 0.45452 0 1 1054900 + 54085 22593 35824 35845 52918 52918 0.05397521198938193 WWKQTMTL 8 Unmodified _WWKQTMTL_ 0 0 0 REV__FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant REV__FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7691650390625 2 547.278595 1092.54264 0.32705 0.00017899 0.15092 8.2593E-05 0.47796 0.00026158 547.2784811548878 126.31 0.71218 126.31 126 126.71 0 32 19 2 0 0 0 0.97994 1 24905 24905 5.7604 5.7604 1 5041000 + 54086 23525 35825 35846 52919 52919 6.704433781123953E-05 WWKWLRQKRWL 11 Unmodified _WWKWLRQKRWL_ 0 0 0 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.385986328125 2 843.480611 1684.94667 NaN NaN NaN NaN NaN NaN NaN 177.56 1 177.56 177.06 178.06 0 0 0 0 0.22632 1 36782 36782 0 0 1 + 54087 13415 35826 35847 52920 52920 0.13159459587041056 WWKWLRQKRWL 11 Unmodified _WWKWLRQKRWL_ 0 0 0 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.385986328125 2 843.480611 1684.94667 NaN NaN NaN NaN NaN NaN NaN 177.57 1 177.57 177.07 178.07 0 0 0 0 0.23698 1 36783 36783 0 0 1 + 54088 13415 35826 35847 52921 52921 0.13159459587041056 WWKWLRQKRWL 11 Unmodified _WWKWLRQKRWL_ 0 0 0 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.4075927734375 2 843.480611 1684.94667 NaN NaN NaN NaN NaN NaN NaN 164.34 1 159.55 159.05 160.05 -4.7898 0 0 0 0.22632 1 32838 32838 0 0 1 + 54089 13415 35826 35847 52922 52922 0.13159459587041056 WWKWLRQKRWL 11 Unmodified _WWKWLRQKRWL_ 0 0 0 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.4075927734375 2 843.480611 1684.94667 NaN NaN NaN NaN NaN NaN NaN 164.36 1 159.57 159.07 160.07 -4.7898 0 0 0 0.23698 1 32841 32841 0 0 1 + 54090 13415 35826 35847 52923 52923 0.13159459587041056 WWKWLRQKRWL 11 Unmodified _WWKWLRQKRWL_ 0 0 0 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.396484375 2 843.480611 1684.94667 NaN NaN NaN NaN NaN NaN NaN 168.81 1 164.02 163.52 164.52 -4.7898 0 0 0 0.22632 1 34149 34149 0 0 1 + 54091 13415 35826 35847 52924 52924 0.13159459587041056 WWKWLRQKRWL 11 Unmodified _WWKWLRQKRWL_ 0 0 0 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3939208984375 2 843.480611 1684.94667 NaN NaN NaN NaN NaN NaN NaN 175.04 1 170.16 169.66 170.66 -4.8845 0 0 0 0.22632 1 34793 34793 0.00056442 0 1 + 54092 13415 35826 35847 52925 52925 0.13159459587041056 WWKWLRQKRWL 11 Unmodified _WWKWLRQKRWL_ 0 0 0 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3939208984375 2 843.480611 1684.94667 NaN NaN NaN NaN NaN NaN NaN 175.05 1 170.16 169.66 170.66 -4.8845 0 0 0 0.23698 1 34795 34795 0 0 1 + 54093 13415 35826 35847 52926 52926 0.13159459587041056 WWKWLRQKRWL 11 Unmodified _WWKWLRQKRWL_ 0 0 0 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.4170532226562 2 843.480611 1684.94667 NaN NaN NaN NaN NaN NaN NaN 175.11 1 170.22 169.72 170.72 -4.8845 0 0 0 0.23698 1 34809 34809 0 0 1 + 54094 13415 35826 35847 52927 52927 0.13159459587041056 WWLFWASA 8 Unmodified _WWLFWASA_ 0 0 0 nc|ENSG00000030110|Q16611-2|BAK1 nc|ENSG00000030110|Q16611-2|BAK1 nc|ENSG00000030110|Q16611-2|BAK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2621459960938 2 533.760895 1065.50724 0.57694 0.00030795 0.90848 0.00048491 1.4854 0.00079286 533.7613697467574 21.607 0.35709 20.133 19.946 20.303 -1.4742 22 9 3 0 0 0 0.95284 1 3666 3666 9.3474 4.4504 1 2917400 54095 12211 35827 35848 52928 52928 -0.022895900317280393 WWLGFFFYLRY 11 Unmodified _WWLGFFFYLRY_ 0 0 0 ENST00000275884.10_1_7:140218236-140218428:-|nuORF ENST00000275884.10_1_7:140218236-140218428:-|nuORF ENST00000275884.10_1_7:140218236-140218428:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2741088867188 3 533.271207 1596.79179 NaN NaN NaN NaN NaN NaN NaN 94.514 1 94.514 94.014 95.014 0 0 0 0 0.22632 1 18510 18510 0.03141 0.0052036 1 54096 8427 35828 35849 52929 52929 0.01726790661996347 WWLGFFFYLRY 11 Unmodified _WWLGFFFYLRY_ 0 0 0 ENST00000275884.10_1_7:140218236-140218428:-|nuORF ENST00000275884.10_1_7:140218236-140218428:-|nuORF ENST00000275884.10_1_7:140218236-140218428:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2735595703125 3 533.271207 1596.79179 NaN NaN NaN NaN NaN NaN NaN 165.17 1 165.17 164.67 165.67 0 0 0 0 0.22632 1 33490 33490 1.4551 0.94916 1 54097 8427 35828 35849 52930 52930 0.01726790661996347 WWNYHVFYKVQ 11 Unmodified _WWNYHVFYKVQ_ 0 0 0 REV__ENST00000433352.1_1_X:64550801-64551062:-|nuORF REV__ENST00000433352.1_1_X:64550801-64551062:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.384765625 2 785.385511 1568.75647 NaN NaN NaN NaN NaN NaN NaN 86.128 1 82.401 81.901 82.901 -3.727 0 0 0 0.22632 1 16836 16836 0.50596 0.47975 1 + 54098 21643 35829 35850 52931 52931 -0.005158718658549333 WWPAPFAS 8 Unmodified _WWPAPFAS_ 0 0 0 REV__ENSG00000184814|ENST00000329447|PRR23B REV__ENSG00000184814|ENST00000329447|PRR23B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2315979003906 2 481.231971 960.449388 NaN NaN NaN NaN NaN NaN NaN 5.1202 1 5.1202 4.6202 5.6202 0 0 0 0 0.21486 1 221 221 0.79363 0 1 + 54099 18916 35830 35851 52932 52932 -0.0324185195715927 WWPGRIVSWW 10 Unmodified _WWPGRIVSWW_ 0 0 0 nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;ENSG00000119772|ENST00000321117|DNMT3A nc|ENSG00000119772|Q9Y6K1-2|DNMT3A nc|ENSG00000119772|Q9Y6K1-2|DNMT3A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2372131347656 3 458.236497 1371.68766 NaN NaN NaN NaN NaN NaN NaN 150.42 1 145.69 145.19 146.19 -4.7323 0 0 0 2.8426 1 29875 29875 1.9064 0.45126 1 54100 3102 35831 35852 52933 52933 0.01668508625107279 WWPVGASL 8 Unmodified _WWPVGASL_ 0 0 0 SLC5A2|p.G211Afs*30|1|0.41|ENSG00000140675|chr16:31487372-31487372|G/-|frameshift_variant;nc|ENSG00000140675|P31639-2|SLC5A2;nc|ENSG00000158865|Q8WWX8-6|SLC5A11;nc|ENSG00000158865|Q8WWX8-3|SLC5A11;nc|ENSG00000158865|Q8WWX8-2|SLC5A11;ENSG00000140675|ENST00000330498|SLC5A2;ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11 SLC5A2|p.G211Afs*30|1|0.41|ENSG00000140675|chr16:31487372-31487372|G/-|frameshift_variant SLC5A2|p.G211Afs*30|1|0.41|ENSG00000140675|chr16:31487372-31487372|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2377624511719 2 458.239796 914.465038 NaN NaN NaN NaN NaN NaN NaN 98.901 1 94.631 94.131 95.131 -4.2692 0 0 0 0.21452 1 18909 18909 13.508 0.97634 1 54101 4319 35832 35853 52934 52934 0.004384345599078188 WWQWWIWWWWP 11 Unmodified _WWQWWIWWWWP_ 0 0 0 REV__chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 615.9439697265625 3 615.954101 1844.84047 NaN NaN NaN NaN NaN NaN NaN 171.31 1 171.31 170.81 171.81 0 0 0 0 0.23698 1 35283 35283 0 0 1 + 54102 13414 35833 35854 52935 52935 -0.048152959782783 WWRQELPWRRQ 11 Unmodified _WWRQELPWRRQ_ 0 0 0 REV__PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant REV__PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7762451171875 3 547.623414 1639.84841 NaN NaN NaN NaN NaN NaN NaN 49.546 1 46.665 46.165 47.165 -2.8811 0 0 0 0.22632 1 9387 9387 0.094841 0.068635 1 + 54103 24435 35834 35855 52936 52936 0.05408231271189834 WWRQELPWRRQ 11 Unmodified _WWRQELPWRRQ_ 0 0 0 REV__PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant REV__PARP6|p.F313Sfs*34|1|0.24|ENSG00000137817|chr15:72257409-72257409|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7890014648438 3 547.623414 1639.84841 0.49195 0.0002694 -3.4859 -0.001909 -2.994 -0.0016396 547.9557422544248 157.2 0.13828 151.93 151.83 151.97 -5.2712 5 3 2 0 0 0 0.96224 1 30484 30484 0.50596 0.4226 1 1421900 + 54104 24435 35834 35855 52937 52937 0.05408231271189834 WWRWSWWWLKW 11 Unmodified _WWRWSWWWLKW_ 0 0 0 REV__chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2883911132812 3 602.63325 1804.87792 NaN NaN NaN NaN NaN NaN NaN 169.3 1 164.51 164.01 165.01 -4.7898 0 0 0 0.22632 1 34288 34288 0 0 1 + 54105 13412 35835 35856 52938 52938 0.007677952873336835 WWRWSWWWLKW 11 Unmodified _WWRWSWWWLKW_ 0 0 0 REV__chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2831420898438 3 602.63325 1804.87792 1.1525 0.00069455 -2.6568 -0.0016011 -1.5043 -0.00090655 602.6312726600172 154.99 0.14175 150.21 150.08 150.23 -4.7791 5 3 2 0 0 0 0.96228 1 30785 30785 0 0 1 1654300 + 54106 13412 35835 35856 52939 52939 0.007677952873336835 WWRWSWWWLKW 11 Unmodified _WWRWSWWWLKW_ 0 0 0 REV__chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2843627929688 3 602.63325 1804.87792 0.53935 0.00032503 0.039155 2.3596E-05 0.57851 0.00034863 602.9666520205252 165.18 0.10513 160.2 160.15 160.25 -4.9811 4 2 2 0 0 0 0.89136 1 32252 32252 0 0 1 8761200 + 54107 13412 35835 35856 52940 52940 0.007677952873336835 WWSGDEAGPH 10 Unmodified _WWSGDEAGPH_ 0 0 0 REV__ENSG00000189120|ENST00000536300|SP6 REV__ENSG00000189120|ENST00000536300|SP6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.209228515625 3 381.161434 1140.46247 -0.19305 -7.3583E-05 -0.94675 -0.00036087 -1.1398 -0.00043445 381.16103007911397 98.949 0.69411 94.816 94.504 95.199 -4.1326 45 19 3 0 0 0 1.1332 1 19368 19368 0.043787 0.042406 1 5352700 + 54108 19194 35836 35857 52941 52941 -0.10214065635705083 WWSLGVTA 8 Unmodified _WWSLGVTA_ 0 0 0 nc|ENSG00000169302|Q8WU08-3|STK32A;ENST00000306304.10_1_5:146619197-146754823:+|nuORF;ENSG00000169302|ENST00000397936|STK32A nc|ENSG00000169302|Q8WU08-3|STK32A nc|ENSG00000169302|Q8WU08-3|STK32A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.23651123046875 2 460.237253 918.459953 0.45959 0.00021152 -0.99665 -0.00045869 -0.53705 -0.00024717 460.23681436902535 32.175 0.62762 30.026 29.688 30.316 -2.1483 27 17 2 0 0 0 8448 1 5623 5623 0.12286 0 1 1641500 54109 5977 35837 35858 52942 52942 -0.0025386930273043617 WWSSLVFY 8 Unmodified _WWSSLVFY_ 0 0 0 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 363.1501770019531 3 363.179766 1086.51747 NaN NaN NaN NaN NaN NaN NaN 103.55 1 99.205 98.705 99.705 -4.346 0 0 0 0.21486 1 19834 19834 0.45834 0 1 + 54110 14763 35838 35859 52943 52943 -0.022330270971451682 WWSVYVRSYN 10 Unmodified _WWSVYVRSYN_ 0 0 0 REV__ENST00000440938.1_1_2:174350896-174350983:-|nuORF REV__ENST00000440938.1_1_2:174350896-174350983:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.8990478515625 3 453.887533 1358.64077 NaN NaN NaN NaN NaN NaN NaN 10.825 1 9.7312 9.2312 10.231 -1.0936 0 0 0 0.22588 1 1252 1252 0.15932 0 1 + 54111 21708 35839 35860 52944 52944 -0.024203957166719192 WWWAYWRQSWD 11 Unmodified _WWWAYWRQSWD_ 0 0 0 REV__NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant REV__NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 556.6812133789062 3 557.249354 1668.72623 0.36799 0.00020506 2.2333 0.0012445 2.6013 0.0014496 557.2522914844773 146.56 0.17093 141.56 141.46 141.64 -5 6 4 2 0 0 0 0.96227 1 28375 28375 0.094841 0.094841 1 1277700 + 54112 23914 35840 35861 52945 52945 -0.08138230531017143 WWWEQKEEPFY 11 Unmodified _WWWEQKEEPFY_ 0 0 0 REV__ENSG00000025796|ENST00000369002|SEC63 REV__ENSG00000025796|ENST00000369002|SEC63 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.779052734375 3 543.245386 1626.71433 0.40067 0.00021766 -2.5301 -0.0013744 -2.1294 -0.0011568 543.2452037674591 110.06 0.1721 110.06 109.92 110.09 0 7 4 2 0 0 0 0.89122 1 21641 21641 0.026206 0 1 1046400 + 54113 14003 35841 35862 52946 52946 -0.07395892064869258 WWWIWWQWWKL 11 Unmodified _WWWIWWQWWKL_ 0 0 0 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2864990234375 3 601.969751 1802.88742 0.39009 0.00023482 -3.5393 -0.0021306 -3.1492 -0.0018957 601.9681117190978 135 0.13536 135 134.92 135.05 0 5 3 2 0 0 0 0.66313 1 26742 26742 0 0 1 2453300 54114 533 35842 35863 52947 52947 0.018095635728514026 WWWIWWQWWKL 11 Unmodified _WWWIWWQWWKL_ 0 0 0 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.294189453125 3 601.969751 1802.88742 1.2272 0.00073875 -0.63746 -0.00038373 0.58976 0.00035502 601.9688339032588 165.16 0.13428 160.37 160.3 160.44 -4.7898 5 3 2 0 0 0 0.66313 1 33053 33053 0 0 1 4745800 54115 533 35842 35863 52948 52948 0.018095635728514026 WWWIWWQWWKL 11 Unmodified _WWWIWWQWWKL_ 0 0 0 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2932739257812 3 601.969751 1802.88742 NaN NaN NaN NaN NaN NaN NaN 84.899 1 81.234 80.734 81.734 -3.6641 0 0 0 0.22632 1 16593 16593 0 0 1 54116 533 35842 35863 52949 52949 0.018095635728514026 WWWIWWQWWKL 11 Unmodified _WWWIWWQWWKL_ 0 0 0 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2734375 3 601.969751 1802.88742 NaN NaN NaN NaN NaN NaN NaN 89.821 1 85.962 85.462 86.462 -3.8595 0 0 0 0.23698 1 17572 17572 0 0 1 54117 533 35842 35863 52950 52950 0.018095635728514026 WWWIWWQWWKL 11 Unmodified _WWWIWWQWWKL_ 0 0 0 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2852172851562 3 601.969751 1802.88742 NaN NaN NaN NaN NaN NaN NaN 105.7 1 101.44 100.94 101.94 -4.2638 0 0 0 0.22632 1 20805 20805 0 0 1 54118 533 35842 35863 52951 52951 0.018095635728514026 WWWIWWQWWKL 11 Unmodified _WWWIWWQWWKL_ 0 0 0 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|477|44.72|0.0|22.09|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2987670898438 3 601.969751 1802.88742 NaN NaN NaN NaN NaN NaN NaN 105.72 1 101.46 100.96 101.96 -4.2638 0 0 0 0.23698 1 20809 20809 0 0 1 54119 533 35842 35863 52952 52952 0.018095635728514026 WWWLKRAERWE 11 Unmodified _WWWLKRAERWE_ 0 0 0 REV__ENST00000381989.3_1_13:25072288-25074457:-|nuORF REV__ENST00000381989.3_1_13:25072288-25074457:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 823.4228515625 2 823.422959 1644.83137 NaN NaN NaN NaN NaN NaN NaN 11.75 1 10.629 10.129 11.129 -1.1206 0 0 0 0.22632 1 1357 1357 0 0 1 + 54120 21173 35843 35864 52953 52953 0.0347431066536501 WWWPQWWLWR 10 Unmodified _WWWPQWWLWR_ 0 0 0 REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7703247070312 3 543.934929 1628.78296 NaN NaN NaN NaN NaN NaN NaN 122.83 1 122.83 122.33 123.33 0 0 0 0 0.22588 1 24208 24208 0.77653 0.36827 1 + 54121 13413 35844 35865 52954 52954 -0.00628138183833471 WWWRRWRARRQ 11 Unmodified _WWWRRWRARRQ_ 0 0 0 REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 581.8826904296875 3 581.650297 1741.92906 NaN NaN NaN NaN NaN NaN NaN 164.58 1 164.58 164.08 165.08 0 0 0 0 0.23698 1 33297 33297 0 0 1 + 54122 20994 35845 35866 52955 52955 0.08777557104758671 WWWSWRWWKLQ 11 Unmodified _WWWSWRWWKLQ_ 0 0 0 chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22601318359375 4 437.721573 1746.85719 0.12277 5.3741E-05 -1.6802 -0.00073546 -1.5574 -0.00068171 437.7207958777528 19.013 0.34959 19.013 18.822 19.172 0 14 9 2 0 0 0 0.89124 1 3096 3096 0.026206 0.026206 1 2015200 54123 531 35846 35867 52956 52956 0.013632049076704789 WWWSWRWWKLQ 11 Unmodified _WWWSWRWWKLQ_ 0 0 0 chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2154235839844 4 437.721573 1746.85719 -0.62398 -0.00027313 -1.0835 -0.00047426 -1.7075 -0.00074739 437.7209554831866 15.245 0.13695 14.023 13.964 14.101 -1.2219 5 3 2 0 0 0 0.96228 1 2132 2132 0 0 1 217340 54124 531 35846 35867 52957 52957 0.013632049076704789 WWWSWRWWKLQ 11 Unmodified _WWWSWRWWKLQ_ 0 0 0 chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|482|82.07|0.0|22.97|+|1|HNRNPA1,HNRNPA1|1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2181396484375 4 437.721573 1746.85719 -0.92643 -0.00040552 -0.4175 -0.00018275 -1.3439 -0.00058827 437.72143036977894 21.189 0.31151 19.468 19.287 19.598 -1.7211 21 8 3 0 0 0 0.96228 1 3322 3322 0 0 1 1265300 54125 531 35846 35867 52958 52958 0.013632049076704789 WWYCESSHY 9 Unmodified _WWYCESSHY_ 0 0 0 REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.755859375 2 630.742573 1259.47059 0.17902 0.00011291 -3.3682 -0.0021245 -3.1892 -0.0020116 631.2420193347424 51.545 0.52303 48.493 48.272 48.795 -3.0517 47 14 5 0 0 0 0.55728 1 9468 9468 0.87518 0.60979 1 3259200 + 54126 13614 35847 35868 52959 52959 -0.1487625471058891 WYAWWWKV 8 Unmodified _WYAWWWKV_ 0 0 0 NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 408.86114501953125 3 408.871155 1223.59164 NaN NaN NaN NaN NaN NaN NaN 9.6379 1 9.6379 9.1379 10.138 0 0 0 0 0.21486 1 1138 1138 0 0 1 54127 12197 35848 35869 52960 52960 -0.011216392149890453 WYDRRLHYRRR 11 Unmodified _WYDRRLHYRRR_ 0 0 0 REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1 REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 839.4833374023438 2 838.953281 1675.89201 0.32399 0.00027182 -1.6835 -0.0014123 -1.3595 -0.0011405 839.4538778402557 105.54 0.52834 101.16 100.88 101.4 -4.3764 29 14 3 0 0 0 0.66313 3 20258 20204;20255;20258 0 0 1 2704500 + 54128 24711 35849 35870 52961;52962;52963 52963 0.08109840768338472 WYDRRLHYRRR 11 Unmodified _WYDRRLHYRRR_ 0 0 0 REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1 REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 838.953281 1675.89201 0.86548 0.00072609 -2.553 -0.0021419 -1.6875 -0.0014158 839.4526895235455 100.69 0.45874 100.69 100.41 100.87 0 -0.31546 -0.00071989 NaN 0 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2946400 + 54129 24711 35849 35870 0.08109840768338472 WYDRRLHYRRR 11 Unmodified _WYDRRLHYRRR_ 0 0 0 REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1 REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 838.953281 1675.89201 0.12594 0.00010566 -1.7466 -0.0014653 -1.6207 -0.0013597 838.9521103509855 105.31 0.42246 101.04 100.81 101.24 -4.2638 0.03664 0.00063317 NaN 0 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3248600 + 54130 24711 35849 35870 0.08109840768338472 WYDRRLHYRRR 11 Unmodified _WYDRRLHYRRR_ 0 0 0 REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1 REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 838.953281 1675.89201 0.32399 0.00027182 -1.6835 -0.0014123 -1.3595 -0.0011405 839.4538778402557 105.54 0.52834 101.16 100.88 101.4 -4.3764 0.15739 0.00073917 NaN 0 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2704500 + 54131 24711 35849 35870 0.08109840768338472 WYDRRLHYRRR 11 Unmodified _WYDRRLHYRRR_ 0 0 0 REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1 REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 838.953281 1675.89201 0.92041 0.00077218 -2.1595 -0.0018117 -1.2391 -0.0010396 838.9513807930202 105.22 0.53391 101.13 100.79 101.33 -4.0913 0.12144 -5.9636E-05 NaN 0 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3448900 + 54132 24711 35849 35870 0.08109840768338472 WYECGVSI 8 Unmodified _WYECGVSI_ 0 0 0 nc|ENSG00000164694|Q4ZHG4-2|FNDC1;ENSG00000164694|ENST00000297267|FNDC1 nc|ENSG00000164694|Q4ZHG4-2|FNDC1 nc|ENSG00000164694|Q4ZHG4-2|FNDC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7235412597656 2 478.712753 955.410954 NaN NaN NaN NaN NaN NaN NaN 159.31 1 154.52 154.02 155.02 -4.7952 0 0 0 0.21486 1 31673 31673 8.5933 0.68312 1 54133 5563 35850 35871 52964 52964 -0.06853525653968973 WYEKLHEWED 10 Unmodified _WYEKLHEWED_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7316589355469 3 478.882337 1433.62518 NaN NaN NaN NaN NaN NaN NaN 9.5686 1 9.5686 9.0686 10.069 0 0 0 0 2.8426 1 1122 1122 0 0 1 54134 7494 35851 35872 52965 52965 -0.07428727024353066 WYFREERLEIQ 11 Unmodified _WYFREERLEIQ_ 0 0 0 nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3 nc|ENSG00000168014|Q4AC94-2|C2CD3 nc|ENSG00000168014|Q4AC94-2|C2CD3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6890869140625 3 523.600052 1567.77833 -0.11595 -6.0712E-05 -1.7097 -0.00089521 -1.8257 -0.00095592 523.9334185365232 123.68 0.14959 118.95 118.85 119 -4.731 5 3 2 0 0 0 0.88957 1 23754 23754 3.0723 2.4869 1 1433500 54135 5868 35852 35873 52966 52966 0.017148880921013188 WYFWRCHVFIW 11 Unmodified _WYFWRCHVFIW_ 0 0 0 TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7744140625 3 548.264058 1641.77035 0.33233 0.0001822 -1.7092 -0.00093707 -1.3768 -0.00075486 548.2644682315592 147.43 0.27563 147.43 147.33 147.61 0 9 7 2 0 0 0 0.89134 1 29476 29476 0.094841 0.088886 1 2423200 54136 26526 35853 35874 52967 52967 -0.024869176383845115 WYILRRYWFPF 11 Unmodified _WYILRRYWFPF_ 0 0 0 REV__ENSG00000188334|ENST00000344839|BSPH1 REV__ENSG00000188334|ENST00000344839|BSPH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 549.7728881835938 3 549.625873 1645.85579 NaN NaN NaN NaN NaN NaN NaN 170.93 1 170.93 170.43 171.43 0 0 0 0 0.23698 1 35177 35177 0.08335 0.018944 1 + 54137 19140 35854 35875 52968 52968 0.058695708189134166 WYKGAPTP 8 Unmodified _WYKGAPTP_ 0 0 0 ENSG00000166135|ENST00000299163|HIF1AN ENSG00000166135|ENST00000299163|HIF1AN ENSG00000166135|ENST00000299163|HIF1AN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2353820800781 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 145.41 1 140.34 139.84 140.84 -5.0671 0 0 0 0.23584 1 28099 28099 0.62683 0 1 54138 5689 35855 35876 52969 52969 -0.002538693027190675 WYKHLKVINPH 11 Unmodified _WYKHLKVINPH_ 0 0 0 REV__nc|ENSG00000185189|Q9NSY0-5|NRBP2 REV__nc|ENSG00000185189|Q9NSY0-5|NRBP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7397766113281 3 478.93834 1433.79319 NaN NaN NaN NaN NaN NaN NaN 127.74 1 122.94 122.44 123.44 -4.7958 0 0 0 0.22632 1 24517 24517 0.026206 0 1 + 54139 18947 35856 35877 52970 52970 0.09364424750742728 WYKQHLSYRL 10 Unmodified _WYKQHLSYRL_ 0 0 0 ENSG00000271447|ENST00000605424|MMP28 ENSG00000271447|ENST00000605424|MMP28 ENSG00000271447|ENST00000605424|MMP28 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2489929199219 3 465.250695 1392.73025 NaN NaN NaN NaN NaN NaN NaN 100.9 1 96.909 96.409 97.409 -3.9895 0 0 0 2.8426 1 19392 19392 1.9064 0.45126 1 54140 8002 35857 35878 52971 52971 0.04959858962706676 WYKQLDLI 8 Unmodified _WYKQLDLI_ 0 0 0 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013854980469 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 176.26 1 171.47 170.97 171.97 -4.7898 0 0 0 0.21486 1 36040 36040 0.40072 0 1 + 54141 15100 35858 35879 52972 52972 0.05019217482708882 WYLAGEARL 9 Unmodified _WYLAGEARL_ 0 0 0 ENSG00000141744|ENST00000269582|PNMT ENSG00000141744|ENST00000269582|PNMT ENSG00000141744|ENST00000269582|PNMT MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2017822265625 3 360.194186 1077.56073 NaN NaN NaN NaN NaN NaN NaN 58.617 1 55.412 54.912 55.912 -3.2052 0 0 0 0.23508 1 10942 10942 4.897 1.0207 1 54142 4394 35859 35880 52973 52973 0.02505162680131434 WYLDQIRREQY 11 Unmodified _WYLDQIRREQY_ 0 0 0 ENSG00000171428|ENST00000307719|NAT1;ENSG00000156006|ENST00000286479|NAT2 ENSG00000171428|ENST00000307719|NAT1 ENSG00000171428|ENST00000307719|NAT1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.392333984375 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 121.63 1 116.94 116.44 117.44 -4.6873 0 0 0 0.22632 1 23351 23351 0.026206 0 1 54143 5074 35860 35881 52974 52974 0.011940039493310906 WYLDQIRREQY 11 Unmodified _WYLDQIRREQY_ 0 0 0 ENSG00000171428|ENST00000307719|NAT1;ENSG00000156006|ENST00000286479|NAT2 ENSG00000171428|ENST00000307719|NAT1 ENSG00000171428|ENST00000307719|NAT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3931274414062 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 115.4 1 111.09 110.59 111.59 -4.3136 0 0 0 0.23698 1 22216 22216 0.35063 0 1 54144 5074 35860 35881 52975 52975 0.011940039493310906 WYLRLLRLLDR 11 Unmodified _WYLRLLRLLDR_ 0 0 0 nc|ENSG00000160145|O60229|KALRN;nc|ENSG00000160145|O60229-2|KALRN;ENST00000488825.5_1_3:123813684-123881061:+|nuORF nc|ENSG00000160145|O60229|KALRN nc|ENSG00000160145|O60229|KALRN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 506.3096618652344 3 506.308544 1515.9038 NaN NaN NaN NaN NaN NaN NaN 158.04 1 158.04 157.54 158.54 0 0 0 0 0.22632 1 31731 31731 1.4551 0.8698 1 54145 12404 35861 35882 52976 52976 0.16648644738961593 WYPFWGLPL 9 Unmodified _WYPFWGLPL_ 0 0 0 MS4A10|p.A99Lfs*12|1|0.12|ENSG00000172689|chr11:60791080-60791080|G/-|frameshift_variant MS4A10|p.A99Lfs*12|1|0.12|ENSG00000172689|chr11:60791080-60791080|G/-|frameshift_variant MS4A10|p.A99Lfs*12|1|0.12|ENSG00000172689|chr11:60791080-60791080|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2748413085938 2 589.805303 1177.59605 NaN NaN NaN NaN NaN NaN NaN 8.1019 1 7.4227 6.9227 7.9227 -0.67913 0 0 0 0.23508 1 807 807 0 0 1 54146 12161 35862 35883 52977 52977 0.014358252079546219 WYQNRRTKWKR 11 Unmodified _WYQNRRTKWKR_ 0 0 0 ENSG00000125492|ENST00000263610|BARHL1;ENSG00000143032|ENST00000370445|BARHL2 ENSG00000125492|ENST00000263610|BARHL1 ENSG00000125492|ENST00000263610|BARHL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2642822265625 3 541.29893 1620.87496 NaN NaN NaN NaN NaN NaN NaN 154.16 1 149.39 148.89 149.89 -4.7684 0 0 0 0.22632 1 30638 30638 0.026206 0.018923 1 54147 3365 35863 35884 52978 52978 0.0893592016252569 WYQSKWHDKRM 11 Unmodified _WYQSKWHDKRM_ 0 0 0 REV__ENST00000583202.5_1_17:61898213-61899202:-|nuORF REV__ENST00000583202.5_1_17:61898213-61899202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2694702148438 3 522.25411 1563.7405 NaN NaN NaN NaN NaN NaN NaN 121.88 1 117.33 116.83 117.83 -4.5476 0 0 0 0.22632 1 24023 24023 1.4551 1.4478 1 + 54148 23251 35864 35885 52979 52979 -0.018819013743950563 WYQSKWHDKRM 11 Unmodified _WYQSKWHDKRM_ 0 0 0 REV__ENST00000583202.5_1_17:61898213-61899202:-|nuORF REV__ENST00000583202.5_1_17:61898213-61899202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2694702148438 3 522.25411 1563.7405 NaN NaN NaN NaN NaN NaN NaN 162.06 1 157.27 156.77 157.77 -4.7898 0 0 0 0.22632 1 32234 32234 1.4551 1.2831 1 + 54149 23251 35864 35885 52980 52980 -0.018819013743950563 WYQSKWHDKRM 11 Unmodified _WYQSKWHDKRM_ 0 0 0 REV__ENST00000583202.5_1_17:61898213-61899202:-|nuORF REV__ENST00000583202.5_1_17:61898213-61899202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2711181640625 3 522.25411 1563.7405 NaN NaN NaN NaN NaN NaN NaN 121.6 1 116.91 116.41 117.41 -4.6873 0 0 0 0.22632 1 23347 23347 3.0723 2.9003 1 + 54150 23251 35864 35885 52981 52981 -0.018819013743950563 WYRCWRAHK 9 Unmodified _WYRCWRAHK_ 0 0 0 ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 435.87811279296875 3 435.885581 1304.63491 NaN NaN NaN NaN NaN NaN NaN 179.73 1 174.94 174.44 175.44 -4.7898 0 0 0 0.23508 1 36769 36769 0.26902 0 1 54151 239 35865 35886 52982 52982 -0.0052177270936226705 WYRSYDGTL 9 Unmodified _WYRSYDGTL_ 0 0 0 REV__SLC38A6|p.K213Nfs*8|1|0.24|ENSG00000139974|chr14:61043156-61043156|A/-|frameshift_variant REV__SLC38A6|p.K213Nfs*8|1|0.24|ENSG00000139974|chr14:61043156-61043156|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 387.7119445800781 3 387.517218 1159.52982 -0.72018 -0.00027908 0.59707 0.00023138 -0.12311 -4.7706E-05 387.5174212105547 49.023 6.2034 46.016 43.786 49.989 -3.0068 363 178 4 0 0 0 0.69394 1 9017 9017 6.6304 6.6304 1 9578800 + 54152 16555 35866 35887 52983 52983 -0.04356035424757465 WYSHPVYARY 10 Unmodified _WYSHPVYARY_ 0 0 0 ENSG00000046647|ENST00000680255|GEMIN8 ENSG00000046647|ENST00000680255|GEMIN8 ENSG00000046647|ENST00000680255|GEMIN8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 671.3603515625 2 671.32238 1340.63021 NaN NaN NaN NaN NaN NaN NaN 169.32 1 169.32 168.82 169.82 0 0 0 0 2.8426 1 34745 34745 0.043787 0 1 54153 1210 35867 35888 52984 52984 -0.026483783711000797 WYTAKDFI 8 Unmodified _WYTAKDFI_ 0 0 0 EFHC1|p.D408Rfs*4|1|0.32|ENSG00000096093|chr6:52469409-52469410|-/A|frameshift_variant;EFHC1|p.D408Tfs*7|6|0.29|ENSG00000096093|chr6:52469410-52469410|A/-|frameshift_variant;EFHC1|p.S488Vfs*8|1|0.09|ENSG00000096093|chr6:52479216-52479216|C/-|frameshift_variant;nc|ENSG00000096093|Q5JVL4-3|EFHC1;ENSG00000096093|ENST00000371068|EFHC1 EFHC1|p.D408Rfs*4|1|0.32|ENSG00000096093|chr6:52469409-52469410|-/A|frameshift_variant EFHC1|p.D408Rfs*4|1|0.32|ENSG00000096093|chr6:52469409-52469410|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2794799804688 2 522.263468 1042.51238 NaN NaN NaN NaN NaN NaN NaN 127.15 1 122.54 122.04 123.04 -4.6172 0 0 0 0.21452 1 25073 25073 13.508 0.97634 1 54154 920 35868 35889 52985 52985 -0.0071733095976469485 WYTAKDFI 8 Unmodified _WYTAKDFI_ 0 0 0 EFHC1|p.D408Rfs*4|1|0.32|ENSG00000096093|chr6:52469409-52469410|-/A|frameshift_variant;EFHC1|p.D408Tfs*7|6|0.29|ENSG00000096093|chr6:52469410-52469410|A/-|frameshift_variant;EFHC1|p.S488Vfs*8|1|0.09|ENSG00000096093|chr6:52479216-52479216|C/-|frameshift_variant;nc|ENSG00000096093|Q5JVL4-3|EFHC1;ENSG00000096093|ENST00000371068|EFHC1 EFHC1|p.D408Rfs*4|1|0.32|ENSG00000096093|chr6:52469409-52469410|-/A|frameshift_variant EFHC1|p.D408Rfs*4|1|0.32|ENSG00000096093|chr6:52469409-52469410|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2630615234375 2 522.263468 1042.51238 -0.5912 -0.00030876 0.076764 4.0091E-05 -0.51443 -0.00026867 522.263506995107 96.497 0.79436 92.262 91.915 92.709 -4.2348 41 22 2 0 0 0 8448 1 18512 18512 0.25148 0.17821 1 4409700 54155 920 35868 35889 52986 52986 -0.0071733095976469485 WYVLSIQA 8 Unmodified _WYVLSIQA_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26470947265625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 49.678 1 46.797 46.297 47.297 -2.8811 0 0 0 0.23366 1 9412 9412 0.68139 0 1 54156 4161 35869 35890 52987 52987 0.027349729028514957 WYVRMNRRRLK 11 Unmodified _WYVRMNRRRLK_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 789.4549560546875 2 789.451528 1576.8885 NaN NaN NaN NaN NaN NaN NaN 162.17 1 162.17 161.67 162.67 0 0 0 0 0.22632 1 32589 32589 0.094841 0 1 54157 7253 35870 35891 52988 52988 0.12313454670129431 WYVTLNKY 8 Unmodified _WYVTLNKY_ 0 0 0 tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1 tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1 tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7940673828125 2 543.784567 1085.55458 0.045824 2.4918E-05 -1.0743 -0.0005842 -1.0285 -0.00055928 543.7841388172891 106.4 1.737 102.02 101.15 102.89 -4.3764 159 49 5 0 0 0 0.60622 1 20302 20302 21.747 4.6338 1 35868000 54158 26095 35871 35892 52989 52989 0.015226444486188484 WYVYQFYLVI 10 Unmodified _WYVYQFYLVI_ 0 0 0 REV__ENSG00000135926|ENST00000258412|TMBIM1 REV__ENSG00000135926|ENST00000258412|TMBIM1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2459716796875 3 465.244547 1392.71181 NaN NaN NaN NaN NaN NaN NaN 161.16 1 161.16 160.66 161.66 0 0 0 0 2.8426 1 32364 32364 0.69767 0.65388 1 + 54159 16300 35872 35893 52990 52990 0.03116304268132808 YAAELIERV 9 Unmodified _YAAELIERV_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2720336914062 2 532.292756 1062.57096 -0.21151 -0.00011259 -0.57325 -0.00030514 -0.78476 -0.00041772 532.2920382451133 111.71 1.1606 107.29 106.68 107.84 -4.4231 70 32 3 0 0 0 0.15889 1 22047 22047 24.882 5.2556 1 5051200 54160 4590 35873 35894 52991 52991 0.04217725614716983 YAAELIERV 9 Unmodified _YAAELIERV_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2703857421875 2 532.292756 1062.57096 0.65787 0.00035018 -1.1006 -0.00058586 -0.44277 -0.00023568 532.2918470828934 111.51 1.0852 107.28 106.69 107.78 -4.2289 68 30 3 0 0 0 0.15889 2 21506 21506;21510 28.495 5.8364 1 5484300 54161 4590 35873 35894 52992;52993 52992 0.04217725614716983 YAALAAAETV 10 Unmodified _YAALAAAETV_ 0 0 0 REV__tr|U7SWP3|U7SWP3_FUSNUFructose-1,6-bisphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01121PE=3SV=1 REV__tr|U7SWP3|U7SWP3_FUSNUFructose-1,6-bisphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01121PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25811767578125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 83.223 1 83.223 82.723 83.723 0 0 0 0 0.22583 1 16226 16226 13.906 1.3745 1 + 54162 25205 35874 35895 52994 52994 0.012100613149982564 YAALVTFGS 9 Unmodified _YAALVTFGS_ 0 0 0 ENSG00000096092|ENST00000211314|TMEM14A ENSG00000096092|ENST00000211314|TMEM14A ENSG00000096092|ENST00000211314|TMEM14A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1645812988281 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 68.29 1 65.11 64.61 65.61 -3.1796 0 0 0 0.23508 1 13260 13260 4.897 0 1 54163 1873 35875 35896 52995 52995 0.003546936318684857 YAAQVLVY 8 Unmodified _YAAQVLVY_ 0 0 0 nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2 nc|ENSG00000109381|Q15723-1|ELF2 nc|ENSG00000109381|Q15723-1|ELF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2579040527344 2 463.752736 925.490919 0.12198 5.6569E-05 -0.0093459 -4.3342E-06 0.11264 5.2235E-05 463.7526143788962 86.063 1.4419 86.063 85.433 86.875 0 122 40 4 0 0 0 0.70613 1 16784 16784 13.508 0 1 26501000 54164 2526 35876 35897 52996 52996 0.025192840115323634 YAARQLQKAM 10 Unmodified _YAARQLQKAM_ 0 0 0 ENSG00000104537|ENST00000419625|ANXA13;nc|ENSG00000104537|P27216-2|ANXA13 ENSG00000104537|ENST00000419625|ANXA13 ENSG00000104537|ENST00000419625|ANXA13 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2715454101562 2 590.318783 1178.62301 NaN NaN NaN NaN NaN NaN NaN 158.24 1 153.45 152.95 153.95 -4.7952 0 0 0 0.22588 1 31466 31466 10.074 1.3285 1 54165 2243 35877 35898 52997 52997 0.04084565756807024 YACFMCQSAA 10 Unmodified _YACFMCQSAA_ 0 0 0 REV__PDZD8|p.K969Tfs*12|1|0.27|ENSG00000165650|chr10:117283826-117283827|TT/-|frameshift_variant REV__PDZD8|p.K969Tfs*12|1|0.27|ENSG00000165650|chr10:117283826-117283827|TT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.785400390625 2 547.70883 1093.40311 0.3989 0.00021848 -0.21296 -0.00011664 0.18594 0.00010184 547.7086367623995 84.684 0.70177 84.684 84.381 85.083 0 43 19 3 0 0 0 0.91149 1 16458 16458 3.5965 0 1 6479600 + 54166 17791 35878 35899 52998 52998 -0.13985744237402287 YACNPSYLR 9 Unmodified _YACNPSYLR_ 0 0 0 AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|11|3|sense AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|11|3|sense AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|11|3|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.796630859375 2 543.755484 1085.49641 0.3121 0.0001697 0.82225 0.0004471 1.1343 0.00061681 544.2582787638167 147.79 0.16985 143.08 143 143.17 -4.7095 6 4 2 0 0 0 0.6329 1 29326 29326 10.824 1.4765 1 1953300 54167 134 35879 35900 52999 52999 -0.04291360468323546 YADEYAIGY 9 Unmodified _YADEYAIGY_ 0 0 0 nc|ENSG00000108773|Q92830-2|KAT2A;ENSG00000108773|ENST00000225916|KAT2A;ENST00000468111.1_1_3:20168975-20187957:+|nuORF;ENSG00000114166|ENST00000263754|KAT2B nc|ENSG00000108773|Q92830-2|KAT2A nc|ENSG00000108773|Q92830-2|KAT2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2744140625 2 532.732197 1063.44984 0.43002 0.00022909 -0.034376 -1.8313E-05 0.39565 0.00021077 532.7321331204517 100.35 0.65817 100.35 100.03 100.69 0 30 18 2 0 0 0 0.74655 1 19716 19716 21.747 10.106 1 1995600 54168 2493 35880 35901 53000 53000 -0.07934521818629037 YADEYAIGY 9 Unmodified _YADEYAIGY_ 0 0 0 nc|ENSG00000108773|Q92830-2|KAT2A;ENSG00000108773|ENST00000225916|KAT2A;ENST00000468111.1_1_3:20168975-20187957:+|nuORF;ENSG00000114166|ENST00000263754|KAT2B nc|ENSG00000108773|Q92830-2|KAT2A nc|ENSG00000108773|Q92830-2|KAT2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2644653320312 2 532.732197 1063.44984 0.80882 0.00043089 0.22789 0.0001214 1.0367 0.00055229 532.7322890027133 104.97 0.64322 100.91 100.58 101.23 -4.0543 31 17 2 0 0 0 0.54354 1 20154 20154 16.942 2.104 1 1459600 54169 2493 35880 35901 53001 53001 -0.07934521818629037 YADFMEWY 8 Unmodified _YADFMEWY_ 0 0 0 BRINP2|p.R77W|1|0.34|ENSG00000198797|chr1:177230105-177230105|C/T|missense_variant BRINP2|p.R77W|1|0.34|ENSG00000198797|chr1:177230105-177230105|C/T|missense_variant BRINP2|p.R77W|1|0.34|ENSG00000198797|chr1:177230105-177230105|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.20428466796875 3 375.484638 1123.43208 -0.088891 -3.3377E-05 -2.1137 -0.00079365 -2.2026 -0.00082703 375.81785356312355 37.381 0.38266 37.381 37.16 37.542 0 18 10 2 0 0 0 1.0276 1 6888 6888 0.45834 0 1 1167200 54170 335 35881 35902 53002 53002 -0.12469560345107311 YADFVVTF 8 Unmodified _YADFVVTF_ 0 0 0 ENST00000569488.1_1_16:85011531-85024224:-|nuORF;ZDHHC7|p.C193Sfs*16|1|0.2|ENSG00000153786|chr16:84977965-84977966|-/AAAG|frameshift_variant;ZDHHC7|p.S280Hfs*5|7|0.37|ENSG00000153786|chr16:84976433-84976433|G/-|frameshift_variant;ENSG00000153786|ENST00000313732|ZDHHC7;nc|ENSG00000153786|Q9NXF8-2|ZDHHC7 ENST00000569488.1_1_16:85011531-85024224:-|nuORF ENST00000569488.1_1_16:85011531-85024224:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2544860839844 2 481.236919 960.459284 0.01144 5.5053E-06 -1.2046 -0.00057968 -1.1931 -0.00057417 481.23630111684673 76.625 0.83253 73.21 72.83 73.662 -3.4151 62 23 3 0 0 0 0.18731 2 15007 15007;15010 46.921 14.804 1 6351100 54171 4977 35882 35903 53003;53004 53003 -0.022527087424123238 YADFVVTF 8 Unmodified _YADFVVTF_ 0 0 0 ENST00000569488.1_1_16:85011531-85024224:-|nuORF;ZDHHC7|p.C193Sfs*16|1|0.2|ENSG00000153786|chr16:84977965-84977966|-/AAAG|frameshift_variant;ZDHHC7|p.S280Hfs*5|7|0.37|ENSG00000153786|chr16:84976433-84976433|G/-|frameshift_variant;ENSG00000153786|ENST00000313732|ZDHHC7;nc|ENSG00000153786|Q9NXF8-2|ZDHHC7 ENST00000569488.1_1_16:85011531-85024224:-|nuORF ENST00000569488.1_1_16:85011531-85024224:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2535400390625 2 481.236919 960.459284 0.064178 3.0885E-05 -1.4895 -0.00071679 -1.4253 -0.0006859 481.23634846735433 76.915 0.63784 73.256 72.97 73.607 -3.6588 44 17 3 0 0 0 0.45067 2 14682 14682;14699 30.225 5.5509 1 5610500 54172 4977 35882 35903 53005;53006 53005 -0.022527087424123238 YAEDTPHF 8 Unmodified _YAEDTPHF_ 0 0 0 REV__SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant REV__SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2765808105469 2 490.211432 978.408311 0.48677 0.00023862 -1.0204 -0.00050019 -0.53358 -0.00026157 490.2108228717652 89.524 0.34838 85.48 85.31 85.659 -4.0443 12 9 2 0 0 0 0.97994 1 17066 17066 15.768 10.538 1 792140 + 54173 15856 35883 35904 53007 53007 -0.08175657787273849 YAEFAKSL 8 Unmodified _YAEFAKSL_ 0 0 0 nc|ENSG00000180398|Q8NI22-2|MCFD2;nc|ENSG00000180398|Q8NI22-3|MCFD2;ENSG00000180398|ENST00000319466|MCFD2;ENST00000493804.1_1_2:47132604-47142912:-|nuORF;ENST00000470873.1_1_2:47132604-47168896:-|nuORF nc|ENSG00000180398|Q8NI22-2|MCFD2 nc|ENSG00000180398|Q8NI22-2|MCFD2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 136.23 1 136.23 135.73 136.73 0 0 0 0 0.21486 1 26992 26992 1.6526 0 1 54174 6673 35884 35905 53008 53008 0.003546936318684857 YAEFAKSL 8 Unmodified _YAEFAKSL_ 0 0 0 nc|ENSG00000180398|Q8NI22-2|MCFD2;nc|ENSG00000180398|Q8NI22-3|MCFD2;ENSG00000180398|ENST00000319466|MCFD2;ENST00000493804.1_1_2:47132604-47142912:-|nuORF;ENST00000470873.1_1_2:47132604-47168896:-|nuORF nc|ENSG00000180398|Q8NI22-2|MCFD2 nc|ENSG00000180398|Q8NI22-2|MCFD2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 124.28 1 119.7 119.2 120.2 -4.5757 0 0 0 0.21486 1 24504 24504 3.9444 0 1 54175 6673 35884 35905 53009 53009 0.003546936318684857 YAEFAKSL 8 Unmodified _YAEFAKSL_ 0 0 0 nc|ENSG00000180398|Q8NI22-2|MCFD2;nc|ENSG00000180398|Q8NI22-3|MCFD2;ENSG00000180398|ENST00000319466|MCFD2;ENST00000493804.1_1_2:47132604-47142912:-|nuORF;ENST00000470873.1_1_2:47132604-47168896:-|nuORF nc|ENSG00000180398|Q8NI22-2|MCFD2 nc|ENSG00000180398|Q8NI22-2|MCFD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 108.02 1 103.88 103.38 104.38 -4.135 0 0 0 0.21486 1 20780 20780 3.9444 0 1 54176 6673 35884 35905 53010 53010 0.003546936318684857 YAEFAKSL 8 Unmodified _YAEFAKSL_ 0 0 0 nc|ENSG00000180398|Q8NI22-2|MCFD2;nc|ENSG00000180398|Q8NI22-3|MCFD2;ENSG00000180398|ENST00000319466|MCFD2;ENST00000493804.1_1_2:47132604-47142912:-|nuORF;ENST00000470873.1_1_2:47132604-47168896:-|nuORF nc|ENSG00000180398|Q8NI22-2|MCFD2 nc|ENSG00000180398|Q8NI22-2|MCFD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.15924072265625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 134.79 1 129.98 129.48 130.48 -4.8175 0 0 0 0.21486 1 25951 25951 3.9444 0 1 54177 6673 35884 35905 53011 53011 0.003546936318684857 YAEFQNIRY 9 Unmodified _YAEFQNIRY_ 0 0 0 nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000569075.5_1_15:42525398-42565582:-|nuORF;ENST00000562946.5_1_15:42519884-42565596:-|nuORF nc|ENSG00000103978|Q8NBN3-3|TMEM87A nc|ENSG00000103978|Q8NBN3-3|TMEM87A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2929077148438 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 103.12 1 103.12 102.62 103.62 0 0 0 0 0.12107 1 20261 20261 51.415 46.699 1 54178 2212 35885 35906 53012 53012 -0.021160600163966592 YAEFQNIRY 9 Unmodified _YAEFQNIRY_ 0 0 0 nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000569075.5_1_15:42525398-42565582:-|nuORF;ENST00000562946.5_1_15:42519884-42565596:-|nuORF nc|ENSG00000103978|Q8NBN3-3|TMEM87A nc|ENSG00000103978|Q8NBN3-3|TMEM87A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2929077148438 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 103.15 1 103.15 102.65 103.65 0 0 0 0 0.00051768 1 20266 20266 81.89 49.585 1 54179 2212 35885 35906 53013 53013 -0.021160600163966592 YAEFQNIRY 9 Unmodified _YAEFQNIRY_ 0 0 0 nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000569075.5_1_15:42525398-42565582:-|nuORF;ENST00000562946.5_1_15:42519884-42565596:-|nuORF nc|ENSG00000103978|Q8NBN3-3|TMEM87A nc|ENSG00000103978|Q8NBN3-3|TMEM87A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.29443359375 2 602.293288 1202.57202 0.54881 0.00033054 0.054444 3.2791E-05 0.60325 0.00036334 602.2931704203188 107.7 0.45071 103.38 103.14 103.59 -4.32 18 12 2 0 0 0 0.063365 3 21235 21191;21235;21255 66.457 43.137 1 1301000 54180 2212 35885 35906 53014;53015;53016 53015 -0.021160600163966592 YAEFQNIRY 9 Unmodified _YAEFQNIRY_ 0 0 0 nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000569075.5_1_15:42525398-42565582:-|nuORF;ENST00000562946.5_1_15:42519884-42565596:-|nuORF nc|ENSG00000103978|Q8NBN3-3|TMEM87A nc|ENSG00000103978|Q8NBN3-3|TMEM87A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2783203125 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 107.54 1 103.13 102.63 103.63 -4.4121 0 0 0 0.05968 1 20636 20636 47.749 27.295 1 54181 2212 35885 35906 53017 53017 -0.021160600163966592 YAEFQNIRY 9 Unmodified _YAEFQNIRY_ 0 0 0 nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000569075.5_1_15:42525398-42565582:-|nuORF;ENST00000562946.5_1_15:42519884-42565596:-|nuORF nc|ENSG00000103978|Q8NBN3-3|TMEM87A nc|ENSG00000103978|Q8NBN3-3|TMEM87A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2797241210938 2 602.293288 1202.57202 0.7805 0.00047009 -0.49886 -0.00030046 0.28164 0.00016963 602.2929806836044 107.41 0.41295 103.28 103.01 103.42 -4.135 17 11 2 0 0 0 0.069179 4 20637 20628;20637;20672;20675 67.838 61.97 1 894160 54182 2212 35885 35906 53018;53019;53020;53021 53019 -0.021160600163966592 YAEPVRSVR 9 Unmodified _YAEPVRSVR_ 0 0 0 ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.201171875 3 359.533091 1075.57744 -0.36996 -0.00013301 0.51463 0.00018503 0.14467 5.2015E-05 359.53324281312155 66.729 0.80025 63.402 62.954 63.754 -3.3268 44 22 3 0 0 0 0.67174 1 12494 12494 8.1555 2.4237 1 1311900 54183 4132 35886 35907 53022 53022 0.04267663566088231 YAFGLLPP 8 Unmodified _YAFGLLPP_ 0 0 0 REV__ENSG00000151148|ENST00000342494|UBE3B REV__ENSG00000151148|ENST00000342494|UBE3B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 438.7192687988281 2 439.244547 876.47454 -0.17433 -7.6574E-05 -0.50338 -0.00022111 -0.67771 -0.00029768 439.24428447972053 59.367 0.5234 56.457 56.248 56.772 -2.9105 17 14 2 0 0 0 0.89646 1 11474 11474 0.12286 0 1 713310 + 54184 17053 35887 35908 53023 53023 0.03136202845416847 YAFKAAHP 8 Unmodified _YAFKAAHP_ 0 0 0 nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;PLEKHA5|p.N310Tfs*4|1|0.15|ENSG00000052126|chr12:19274611-19274611|A/-|frameshift_variant;PLEKHA5|p.N310Kfs*8|2|0.26|ENSG00000052126|chr12:19274610-19274611|-/A|frameshift_variant;PLEKHA5|p.K320Rfs*3|1|0.28|ENSG00000052126|chr12:19274641-19274641|A/-|frameshift_variant;ENST00000510738.2_1_12:19413894-19459437:+|nuORF;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;PLEKHA5|p.R232H|1|0.18|ENSG00000052126|chr12:19265834-19265834|G/A|missense_variant nc|ENSG00000052126|Q9HAU0-5|PLEKHA5 nc|ENSG00000052126|Q9HAU0-5|PLEKHA5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 302.1602478027344 3 302.160706 903.460287 NaN NaN NaN NaN NaN NaN NaN 7.3404 1 6.3256 5.8256 6.8256 -1.0148 0 0 0 0.21486 1 582 582 0 0 1 54185 1250 35888 35909 53024 53024 0.004695504171195353 YAGYITQL 8 Unmodified _YAGYITQL_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 116.22 1 111.73 111.23 112.23 -4.486 0 0 0 0.23837 1 22915 22915 0.063987 0 1 + 54186 19081 35889 35910 53025 53025 0.003546936318684857 YAGYITQL 8 Unmodified _YAGYITQL_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 161.36 1 156.56 156.06 157.06 -4.7952 0 0 0 0.23837 1 32089 32089 0.063987 0.063987 1 + 54187 19081 35889 35910 53026 53026 0.003546936318684857 YAGYITQL 8 Unmodified _YAGYITQL_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646728515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 126.48 1 121.68 121.18 122.18 -4.7958 0 0 0 0.21486 1 24278 24278 1.8442 0 1 + 54188 19081 35889 35910 53027 53027 0.003546936318684857 YAIFYAALY 9 Unmodified _YAIFYAALY_ 0 0 0 REV__GPR50|p.P523Afs*8|1|0.18|ENSG00000102195|chrX:151181146-151181147|-/A|frameshift_variant REV__GPR50|p.P523Afs*8|1|0.18|ENSG00000102195|chrX:151181146-151181147|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7823486328125 2 547.781493 1093.54843 NaN NaN NaN NaN NaN NaN NaN 110.37 1 110.37 109.87 110.87 0 0 0 0 0.23508 1 21705 21705 9.3474 2.6243 1 + 54189 14826 35890 35911 53028 53028 0.005401262170835253 YAIIFSNLAA 10 Unmodified _YAIIFSNLAA_ 0 0 0 tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1 tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1 tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2817993164062 2 541.797675 1081.5808 0.22249 0.00012054 -0.35147 -0.00019043 -0.12898 -6.9883E-05 541.7973093348743 81.891 0.48104 78.334 78.101 78.582 -3.557 23 13 2 0 0 0 0.85223 1 16033 16033 13.042 0 1 1408600 54190 26051 35891 35912 53029 53029 0.04326913620070627 YAKILLGA 8 Unmodified _YAKILLGA_ 0 0 0 REV__TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant REV__TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 425.2390441894531 2 424.765646 847.516739 0.12817 5.4442E-05 0.37446 0.00015906 0.50263 0.0002135 424.7657534721825 23.81 0.58557 23.81 23.48 24.066 0 24 16 2 0 0 0 0.88047 1 4122 4122 0.79363 0 1 1244600 + 54191 17003 35892 35913 53030 53030 0.08688178253805745 YAKLIFLYRS 10 Unmodified _YAKLIFLYRS_ 0 0 0 nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;ENST00000521877.1_1_16:88782015-88782615:-|nuORF;ENST00000484567.5_1_16:88782015-88783673:-|nuORF;nc|ENSG00000154864|Q9H5I5-3|PIEZO2;ENSG00000103335|ENST00000301015|PIEZO1 nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5-2|PIEZO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2469177246094 3 425.248291 1272.72304 NaN NaN NaN NaN NaN NaN NaN 35.482 1 33.205 32.705 33.705 -2.2766 0 0 0 2.8426 1 6240 6240 0.26539 0 1 54192 5030 35893 35914 53031 53031 0.09759126362268944 YALDPGCEDNY 11 Unmodified _YALDPGCEDNY_ 0 0 0 REV__tr|U7T8E8|U7T8E8_FUSNUTIGR00370familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00030PE=4SV=1 REV__tr|U7T8E8|U7T8E8_FUSNUTIGR00370familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00030PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7799072265625 2 630.247886 1258.48122 0.5483 0.00034556 0.1072 6.7564E-05 0.6555 0.00041313 630.247828083937 102.24 0.7556 97.916 97.64 98.396 -4.3208 46 21 3 0 0 0 0.74417 1 19633 19633 8.7454 0 1 2844800 + 54193 25467 35894 35915 53032 53032 -0.13768316846812922 YALLIIHGSY 10 Unmodified _YALLIIHGSY_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.322998046875 2 575.318774 1148.623 0.12461 7.1693E-05 0.8797 0.00050611 1.0043 0.0005778 575.3188731587771 125.16 0.78156 120.56 120.19 120.97 -4.5984 44 21 3 0 0 0 0.51803 1 24734 24734 0.84494 0.84494 1 3941100 54194 4285 35895 35916 53033 53033 0.054628890284675435 YALPFGWC 8 Unmodified _YALPFGWC_ 0 0 0 ENST00000573186.5_3_17:7219444-7222432:-|nuORF;ENST00000572680.1_1_17:7221024-7221219:-|nuORF;nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4 ENST00000573186.5_3_17:7219444-7222432:-|nuORF;nc|ENSG00000215041|Q96JN8-2|NEURL4 nc|ENSG00000215041|Q96JN8-2|NEURL4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7209167480469 2 478.720381 955.42621 NaN NaN NaN NaN NaN NaN NaN 8.2376 1 7.5585 7.0585 8.0585 -0.67913 0 0 0 0.21486 1 835 835 0.79363 0 1 54195 7739;11434 35896 35917 53034 53034 -0.05328614066127102 YAMDLRYI 8 Unmodified _YAMDLRYI_ 0 0 0 CPT1A|p.L260R|1|0.38|ENSG00000110090|chr11:68794904-68794904|A/C|missense_variant CPT1A|p.L260R|1|0.38|ENSG00000110090|chr11:68794904-68794904|A/C|missense_variant CPT1A|p.L260R|1|0.38|ENSG00000110090|chr11:68794904-68794904|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2825927734375 2 522.762778 1043.511 -0.80844 -0.00042262 0.73524 0.00038436 -0.073197 -3.8265E-05 522.7629037658027 109.07 0.86411 104.62 104.08 104.95 -4.4518 39 24 2 0 0 0 0.97173 1 20964 20964 18.135 1.1927 1 2024900 54196 719 35897 35918 53035 53035 -0.009012883201648947 YAMVIVSF 8 Unmodified _YAMVIVSF_ 0 0 0 REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant REV__SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2422180175781 2 465.243689 928.472826 NaN NaN NaN NaN NaN NaN NaN 162.53 1 157.74 157.24 158.24 -4.7898 0 0 0 0.23711 1 32346 32346 0.0082765 0 1 + 54197 24595 35898 35919 53036 53036 0.005728257651526292 YANTPASSRK 10 Unmodified _YANTPASSRK_ 0 0 0 nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant;nc|ENSG00000166833|Q8IVL1-5|NAV2;NAV2|p.S954G|1|0.29|ENSG00000166833|chr11:20035981-20035981|A/G|missense_variant nc|ENSG00000166833|Q8IVL1-11|NAV2 nc|ENSG00000166833|Q8IVL1-11|NAV2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7843017578125 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 168.53 1 163.6 163.1 164.1 -4.9295 0 0 0 2.8426 1 33229 33229 0.51642 0.47263 1 54198 12442 35899 35920 53037 53037 0.008587693238041538 YANYYTREV 9 Unmodified _YANYYTREV_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2632446289062 2 589.77747 1177.54039 0.69809 0.00041172 0.57411 0.0003386 1.2722 0.00075032 589.7777491342833 67.166 0.64112 63.669 63.387 64.028 -3.4965 24 17 2 0 0 0 0.16539 1 12613 12613 41.956 24.843 1 1692000 54199 2862 35900 35921 53038 53038 -0.041280527703293046 YANYYTREV 9 Unmodified _YANYYTREV_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2688598632812 2 589.77747 1177.54039 0.32599 0.00019226 1.2172 0.00071787 1.5432 0.00091013 589.778022236125 66.938 0.55656 63.611 63.273 63.83 -3.3268 27 15 2 0 0 0 0.30618 1 12586 12586 31.268 2.7738 1 1439200 54200 2862 35900 35921 53039 53039 -0.041280527703293046 YAPAPPPPP 9 Unmodified _YAPAPPPPP_ 0 0 0 ENST00000272233.5_1_2:20646980-20647151:+|nuORF ENST00000272233.5_1_2:20646980-20647151:+|nuORF ENST00000272233.5_1_2:20646980-20647151:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7548828125 2 453.739628 905.464704 -0.22528 -0.00010222 1.1601 0.00052638 0.93481 0.00042416 453.7397618977598 70.867 1.3056 67.618 66.86 68.166 -3.2492 55 36 2 0 0 0 0.60888 1 13698 13698 1.2148 0 1 1723200 54201 8406 35901 35922 53040 53040 0.008190148400444741 YAPTATSY 8 Unmodified _YAPTATSY_ 0 0 0 GABRA1|p.P402Tfs*9|1|0.29|ENSG00000022355|chr5:161897251-161897261|CAAGCCCGAAA/-|frameshift_variant;ENSG00000022355|ENST00000393943|GABRA1 GABRA1|p.P402Tfs*9|1|0.29|ENSG00000022355|chr5:161897251-161897261|CAAGCCCGAAA/-|frameshift_variant GABRA1|p.P402Tfs*9|1|0.29|ENSG00000022355|chr5:161897251-161897261|CAAGCCCGAAA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2164306640625 2 437.203076 872.391599 NaN NaN NaN NaN NaN NaN NaN 138 1 133.36 132.86 133.86 -4.6413 0 0 0 0.21452 1 27240 27240 13.508 0 1 54202 1127 35902 35923 53041 53041 -0.04970158673233982 YAQAQERP 8 Unmodified _YAQAQERP_ 0 0 0 REV__ENSG00000172476|ENST00000304236|RAB40A REV__ENSG00000172476|ENST00000304236|RAB40A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2477722167969 2 481.738148 961.461744 0.081004 3.9023E-05 -0.020354 -9.8053E-06 0.06065 2.9217E-05 481.73809373115404 37.428 0.68964 37.428 37.027 37.717 0 39 19 3 0 0 0 0.95515 1 6865 6865 10.824 0 1 3620000 + 54203 14823 35903 35924 53042 53042 -0.020528602847548427 YAQLRNAA 8 Unmodified _YAQLRNAA_ 0 0 0 CLMN|p.V929A|1|0.29|ENSG00000165959|chr14:95193903-95193903|A/G|missense_variant CLMN|p.V929A|1|0.29|ENSG00000165959|chr14:95193903-95193903|A/G|missense_variant CLMN|p.V929A|1|0.29|ENSG00000165959|chr14:95193903-95193903|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7514343261719 2 453.743234 905.471915 NaN NaN NaN NaN NaN NaN NaN 48.894 1 45.895 45.395 46.395 -2.999 0 0 0 0.20568 1 8930 8930 20.871 2.7362 1 54204 580 35904 35925 53043 53043 0.015397474404608147 YAQRARQMR 9 Unmodified _YAQRARQMR_ 0 0 0 REV__ENSG00000167306|ENST00000285039|MYO5B REV__ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.271240234375 2 590.311823 1178.60909 0.24196 0.00014283 2.2406 0.0013226 2.4826 0.0014655 590.3116016759079 136.8 0.13889 131.97 131.9 132.04 -4.8345 5 3 2 0 0 0 0.6231 1 26361 26361 0.029283 0 1 1067200 + 54205 17916 35905 35926 53044 53044 0.026933330483871032 YARDAPNI 8 Unmodified _YARDAPNI_ 0 0 0 REV__nc|ENSG00000070614|P52848-3|NDST1 REV__nc|ENSG00000070614|P52848-3|NDST1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.234375 2 460.235242 918.45593 0.53053 0.00024417 -0.39333 -0.00018102 0.13721 6.3147E-05 460.2351061317001 45.421 0.52593 45.421 45.165 45.691 0 30 14 3 0 0 0 8448 1 8518 8518 6.2058 0 1 1302900 + 54206 14262 35906 35927 53045 53045 -0.006559587964375169 YARTLHPA 8 Unmodified _YARTLHPA_ 0 0 0 REV__nc|ENSG00000144381|P10809-2|HSPD1 REV__nc|ENSG00000144381|P10809-2|HSPD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1723327636719 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 152.27 1 152.27 151.77 152.77 0 0 0 0 0.21486 1 30499 30499 1.8442 0.19162 1 + 54207 16779 35907 35928 53046 53046 0.02600337820126697 YARTLHPA 8 Unmodified _YARTLHPA_ 0 0 0 REV__nc|ENSG00000144381|P10809-2|HSPD1 REV__nc|ENSG00000144381|P10809-2|HSPD1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.17034912109375 3 310.171493 927.49265 NaN NaN NaN NaN NaN NaN NaN 152.86 1 152.86 152.36 153.36 0 0 0 0 0.21486 1 30622 30622 1.8442 0.19162 1 + 54208 16779 35907 35928 53047 53047 0.02600337820126697 YASAELKF 8 Unmodified _YASAELKF_ 0 0 0 ENST00000520923.5_1_8:101051146-101092499:-|nuORF;RGS22|p.K914Nfs*18|3|0.3|ENSG00000132554|chr8:100002250-100002250|T/-|frameshift_variant;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22 ENST00000520923.5_1_8:101051146-101092499:-|nuORF ENST00000520923.5_1_8:101051146-101092499:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16961669921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 74.822 1 74.822 74.322 75.322 0 0 0 0 0.23837 1 14528 14528 0.12286 0 1 54209 3742 35908 35929 53048 53048 0.003546936318684857 YASAELKF 8 Unmodified _YASAELKF_ 0 0 0 ENST00000520923.5_1_8:101051146-101092499:-|nuORF;RGS22|p.K914Nfs*18|3|0.3|ENSG00000132554|chr8:100002250-100002250|T/-|frameshift_variant;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22 ENST00000520923.5_1_8:101051146-101092499:-|nuORF ENST00000520923.5_1_8:101051146-101092499:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16473388671875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 149.95 1 149.95 149.45 150.45 0 0 0 0 0.21486 1 30017 30017 0.45834 0 1 54210 3742 35908 35929 53049 53049 0.003546936318684857 YASAELKF 8 Unmodified _YASAELKF_ 0 0 0 ENST00000520923.5_1_8:101051146-101092499:-|nuORF;RGS22|p.K914Nfs*18|3|0.3|ENSG00000132554|chr8:100002250-100002250|T/-|frameshift_variant;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22 ENST00000520923.5_1_8:101051146-101092499:-|nuORF ENST00000520923.5_1_8:101051146-101092499:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 88.021 1 84.228 83.728 84.728 -3.7926 0 0 0 0.23837 1 17214 17214 0.12286 0 1 54211 3742 35908 35929 53050 53050 0.003546936318684857 YASAELKF 8 Unmodified _YASAELKF_ 0 0 0 ENST00000520923.5_1_8:101051146-101092499:-|nuORF;RGS22|p.K914Nfs*18|3|0.3|ENSG00000132554|chr8:100002250-100002250|T/-|frameshift_variant;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22 ENST00000520923.5_1_8:101051146-101092499:-|nuORF ENST00000520923.5_1_8:101051146-101092499:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1644592285156 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 145.78 1 140.67 140.17 141.17 -5.1108 0 0 0 0.23837 1 28181 28181 0.12286 0 1 54212 3742 35908 35929 53051 53051 0.003546936318684857 YASAELKF 8 Unmodified _YASAELKF_ 0 0 0 ENST00000520923.5_1_8:101051146-101092499:-|nuORF;RGS22|p.K914Nfs*18|3|0.3|ENSG00000132554|chr8:100002250-100002250|T/-|frameshift_variant;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22 ENST00000520923.5_1_8:101051146-101092499:-|nuORF ENST00000520923.5_1_8:101051146-101092499:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 153.71 1 148.44 147.94 148.94 -5.2669 0 0 0 0.21486 1 29799 29799 0.45834 0 1 54213 3742 35908 35929 53052 53052 0.003546936318684857 YASAELKF 8 Unmodified _YASAELKF_ 0 0 0 ENST00000520923.5_1_8:101051146-101092499:-|nuORF;RGS22|p.K914Nfs*18|3|0.3|ENSG00000132554|chr8:100002250-100002250|T/-|frameshift_variant;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22 ENST00000520923.5_1_8:101051146-101092499:-|nuORF ENST00000520923.5_1_8:101051146-101092499:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 107.79 1 103.66 103.16 104.16 -4.135 0 0 0 0.21486 1 20737 20737 1.8442 0 1 54214 3742 35908 35929 53053 53053 0.003546936318684857 YASAELKF 8 Unmodified _YASAELKF_ 0 0 0 ENST00000520923.5_1_8:101051146-101092499:-|nuORF;RGS22|p.K914Nfs*18|3|0.3|ENSG00000132554|chr8:100002250-100002250|T/-|frameshift_variant;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22 ENST00000520923.5_1_8:101051146-101092499:-|nuORF ENST00000520923.5_1_8:101051146-101092499:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 137.89 1 133.05 132.55 133.55 -4.84 0 0 0 0.21486 1 26571 26571 1.8442 0 1 54215 3742 35908 35929 53054 53054 0.003546936318684857 YASAELKF 8 Unmodified _YASAELKF_ 0 0 0 ENST00000520923.5_1_8:101051146-101092499:-|nuORF;RGS22|p.K914Nfs*18|3|0.3|ENSG00000132554|chr8:100002250-100002250|T/-|frameshift_variant;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22 ENST00000520923.5_1_8:101051146-101092499:-|nuORF ENST00000520923.5_1_8:101051146-101092499:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 146.1 1 141.1 140.6 141.6 -5 0 0 0 0.21486 1 28270 28270 1.8442 0 1 54216 3742 35908 35929 53055 53055 0.003546936318684857 YASCRIRLEY 10 Unmodified _YASCRIRLEY_ 0 0 0 ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.2465515136719 3 425.216774 1272.62849 NaN NaN NaN NaN NaN NaN NaN 120.58 1 116.06 115.56 116.56 -4.5221 0 0 0 2.8426 1 23775 23775 0.043787 0 1 54217 3777 35909 35930 53056 53056 0.003082445486143115 YASVIVGLK 9 Unmodified _YASVIVGLK_ 0 0 0 REV__ENST00000549498.5_1_12:53442984-53449630:+|nuORF REV__ENST00000549498.5_1_12:53442984-53449630:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1798095703125 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 119.53 1 119.53 119.03 120.03 0 0 0 0 0.23508 1 23552 23552 1.1933 0.735 1 + 54218 15229 35910 35931 53057 53057 0.08807832454010622 YASVIVGLK 9 Unmodified _YASVIVGLK_ 0 0 0 REV__ENST00000549498.5_1_12:53442984-53449630:+|nuORF REV__ENST00000549498.5_1_12:53442984-53449630:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.185791015625 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 123.03 1 118.3 117.8 118.8 -4.731 0 0 0 0.23508 1 23634 23634 2.7352 0.23671 1 + 54219 15229 35910 35931 53058 53058 0.08807832454010622 YASVIVGLK 9 Unmodified _YASVIVGLK_ 0 0 0 REV__ENST00000549498.5_1_12:53442984-53449630:+|nuORF REV__ENST00000549498.5_1_12:53442984-53449630:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 317.1547546386719 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 124.44 1 119.67 119.17 120.17 -4.7681 0 0 0 0.23508 1 23900 23900 1.1933 0.735 1 + 54220 15229 35910 35931 53059 53059 0.08807832454010622 YASVIVGLK 9 Unmodified _YASVIVGLK_ 0 0 0 REV__ENST00000549498.5_1_12:53442984-53449630:+|nuORF REV__ENST00000549498.5_1_12:53442984-53449630:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1905212402344 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 53.927 1 50.832 50.332 51.332 -3.0954 0 0 0 0.23508 1 9968 9968 1.0715 0 1 + 54221 15229 35910 35931 53060 53060 0.08807832454010622 YASVIVGLK 9 Unmodified _YASVIVGLK_ 0 0 0 REV__ENST00000549498.5_1_12:53442984-53449630:+|nuORF REV__ENST00000549498.5_1_12:53442984-53449630:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.1753234863281 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 102.84 1 98.816 98.316 99.316 -4.0212 0 0 0 0.23508 1 19770 19770 1.0715 0 1 + 54222 15229 35910 35931 53061 53061 0.08807832454010622 YASVIVGLK 9 Unmodified _YASVIVGLK_ 0 0 0 REV__ENST00000549498.5_1_12:53442984-53449630:+|nuORF REV__ENST00000549498.5_1_12:53442984-53449630:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 317.17462158203125 3 317.195416 948.564418 NaN NaN NaN NaN NaN NaN NaN 123.19 1 118.59 118.09 119.09 -4.5926 0 0 0 0.23508 1 23714 23714 1.1933 0.735 1 + 54223 15229 35910 35931 53062 53062 0.08807832454010622 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 76.721 1 76.721 76.221 77.221 0 0 0 0 0.23584 1 14910 14910 0.12286 0 1 54224 5117 35911 35932 53063 53063 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 94.528 1 94.528 94.028 95.028 0 0 0 0 0.23626 1 18512 18512 0.12286 0 1 54225 5117 35911 35932 53064 53064 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 95.102 1 95.102 94.602 95.602 0 0 0 0 0.23626 1 18627 18627 0.12286 0 1 54226 5117 35911 35932 53065 53065 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 95.311 1 95.311 94.811 95.811 0 0 0 0 0.23626 1 18671 18671 0.12286 0 1 54227 5117 35911 35932 53066 53066 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 97.566 1 97.566 97.066 98.066 0 0 0 0 0.2386 1 19122 19122 0.12286 0 1 54228 5117 35911 35932 53067 53067 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 98.828 1 98.828 98.328 99.328 0 0 0 0 0.2386 1 19374 19374 0.0082765 0 1 54229 5117 35911 35932 53068 53068 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 52.423 1 49.541 49.041 50.041 -2.8824 0 0 0 0.23584 1 9974 9974 0.12286 0 1 54230 5117 35911 35932 53069 53069 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16473388671875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 80.939 1 77.382 76.882 77.882 -3.557 0 0 0 0.21486 1 15804 15804 7.2892 3.3448 1 54231 5117 35911 35932 53070 53070 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1698913574219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 86.713 1 82.986 82.486 83.486 -3.727 0 0 0 0.21486 1 16954 16954 3.9444 0 1 54232 5117 35911 35932 53071 53071 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 103.9 1 99.682 99.182 100.18 -4.2183 0 0 0 0.23584 1 20430 20430 0.62683 0 1 54233 5117 35911 35932 53072 53072 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 125.66 1 121.06 120.56 121.56 -4.5984 0 0 0 0.2386 1 24776 24776 0.12286 0 1 54234 5117 35911 35932 53073 53073 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16522216796875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 127.9 1 123.28 122.78 123.78 -4.6172 0 0 0 0.2386 1 25219 25219 0.12286 0.11459 1 54235 5117 35911 35932 53074 53074 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 67.46 1 63.963 63.463 64.463 -3.4965 0 0 0 0.21486 1 12657 12657 1.6526 0 1 54236 5117 35911 35932 53075 53075 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 80.234 1 76.409 75.909 76.909 -3.8257 0 0 0 0.23182 1 15225 15225 0.62683 0 1 54237 5117 35911 35932 53076 53076 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 89.751 1 85.707 85.207 86.207 -4.0443 0 0 0 0.23584 1 17101 17101 0.12286 0 1 54238 5117 35911 35932 53077 53077 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1652526855469 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 95.939 1 91.747 91.247 92.247 -4.1911 0 0 0 0.23584 1 18314 18314 0.12286 0 1 54239 5117 35911 35932 53078 53078 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.165283203125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 156.6 1 151.31 150.81 151.81 -5.2854 0 0 0 0.23837 1 30381 30381 0 0 1 54240 5117 35911 35932 53079 53079 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16412353515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 54.507 1 51.369 50.869 51.869 -3.1377 0 0 0 0.23584 1 10089 10089 0.12286 0 1 54241 5117 35911 35932 53080 53080 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 67.744 1 64.417 63.917 64.917 -3.3268 0 0 0 0.2386 1 12778 12778 0.12286 0 1 54242 5117 35911 35932 53081 53081 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 68.872 1 65.482 64.982 65.982 -3.3903 0 0 0 0.2386 1 13012 13012 0.12286 0 1 54243 5117 35911 35932 53082 53082 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 71.057 1 67.59 67.09 68.09 -3.467 0 0 0 0.2386 1 13462 13462 0.12286 0 1 54244 5117 35911 35932 53083 53083 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648254394531 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 73.01 1 69.472 68.972 69.972 -3.5385 0 0 0 0.23182 1 13847 13847 0.12286 0 1 54245 5117 35911 35932 53084 53084 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1646423339844 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 73.316 1 69.777 69.277 70.277 -3.5385 0 0 0 0.23182 1 13914 13914 0.12286 0 1 54246 5117 35911 35932 53085 53085 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1703186035156 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 104.44 1 100.38 99.882 100.88 -4.0543 0 0 0 0.21486 1 20083 20083 1.6526 0 1 54247 5117 35911 35932 53086 53086 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 104.54 1 100.49 99.986 100.99 -4.0543 0 0 0 0.21486 1 20102 20102 1.6526 0 1 54248 5117 35911 35932 53087 53087 0.00354693631857117 YATVALQY 8 Unmodified _YATVALQY_ 0 0 0 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1646423339844 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 140.81 1 135.95 135.45 136.45 -4.8678 0 0 0 0.2386 1 27158 27158 0.12286 0 1 54249 5117 35911 35932 53088 53088 0.00354693631857117 YATVIAQY 8 Unmodified _YATVIAQY_ 0 0 0 REV__TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant REV__TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1639404296875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 144.53 1 139.59 139.09 140.09 -4.9445 0 0 0 0.21486 1 27919 27919 1.6526 0 1 + 54250 19240 35912 35933 53089 53089 0.003546936318457483 YAVCALHP 8 Unmodified _YAVCALHP_ 0 0 0 REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22808837890625 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 48.066 1 48.066 47.566 48.566 0 0 0 0 0.23711 1 9070 9070 0.12286 0 1 + 54251 13453 35913 35934 53090 53090 -0.019854982088986617 YAVCALHP 8 Unmodified _YAVCALHP_ 0 0 0 REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2195129394531 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 162.52 1 162.52 162.02 163.02 0 0 0 0 0.22722 1 32679 32679 0.62683 0.49901 1 + 54252 13453 35913 35934 53091 53091 -0.019854982088986617 YAVCALHP 8 Unmodified _YAVCALHP_ 0 0 0 REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2170715332031 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 176.06 1 176.06 175.56 176.56 0 0 0 0 0.21486 1 36473 36473 2.8892 0.31174 1 + 54253 13453 35913 35934 53092 53092 -0.019854982088986617 YAVCALHP 8 Unmodified _YAVCALHP_ 0 0 0 REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2165222167969 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 176.29 1 176.29 175.79 176.79 0 0 0 0 0.21486 1 36520 36520 0.79363 0 1 + 54254 13453 35913 35934 53093 53093 -0.019854982088986617 YAVCALHP 8 Unmodified _YAVCALHP_ 0 0 0 REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2192687988281 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 45.477 1 42.637 42.137 43.137 -2.8409 0 0 0 0.23711 1 8567 8567 0.12286 0 1 + 54255 13453 35913 35934 53094 53094 -0.019854982088986617 YAVCALHP 8 Unmodified _YAVCALHP_ 0 0 0 REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant REV__CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.228271484375 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 108.23 1 104.1 103.6 104.6 -4.135 0 0 0 0.21486 1 20824 20824 6.3541 0.59368 1 + 54256 13453 35913 35934 53095 53095 -0.019854982088986617 YAVIFMAA 8 Unmodified _YAVIFMAA_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 443.2309875488281 2 443.230582 884.446611 NaN NaN NaN NaN NaN NaN NaN 40.33 1 37.841 37.341 38.341 -2.4896 0 0 0 0.22847 1 7216 7216 10.074 0 1 + 54257 16987 35914 35935 53096 53096 -0.00023443406314527238 YAVLTDKKN 9 Unmodified _YAVLTDKKN_ 0 0 0 tr|U7T3Q1|U7T3Q1_FUSNUAlcoholdehydrogenaseiron-type/glyceroldehydrogenaseGldAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00491PE=3SV=1 tr|U7T3Q1|U7T3Q1_FUSNUAlcoholdehydrogenaseiron-type/glyceroldehydrogenaseGldAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00491PE=3SV=1 tr|U7T3Q1|U7T3Q1_FUSNUAlcoholdehydrogenaseiron-type/glyceroldehydrogenaseGldAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00491PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 351.07122802734375 3 351.197596 1050.57096 0.21041 7.3897E-05 -0.18311 -6.4309E-05 0.027301 9.588E-06 351.19749089637816 33.923 0.62143 31.776 31.427 32.048 -2.1468 47 17 4 0 0 0 0.8825 1 5883 5883 0.23584 0 1 6942400 54258 26413 35915 35936 53097 53097 0.04769725614710296 YAVRDDKI 8 Unmodified _YAVRDDKI_ 0 0 0 REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2129821777344 2 490.263999 978.513445 0.22559 0.0001106 0.017622 8.6395E-06 0.24321 0.00011924 490.26405705337817 83.605 0.61133 79.731 79.466 80.077 -3.8736 24 16 2 0 0 0 8448 1 15940 15940 0.68139 0 1 1851500 + 54259 24924 35916 35937 53098 53098 0.023328834091330464 YAVRLSAAE 9 Unmodified _YAVRLSAAE_ 0 0 0 nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS nc|ENSG00000160285|P48449-2|LSS nc|ENSG00000160285|P48449-2|LSS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2643127441406 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 97.118 1 97.118 96.618 97.618 0 0 0 0 0.19711 1 19030 19030 0.40827 0 1 54260 5244 35917 35938 53099 53099 0.023328834091216777 YAYLSDRSS 9 Unmodified _YAYLSDRSS_ 0 0 0 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.279296875 2 531.248546 1060.48254 0.40655 0.00021598 -0.42495 -0.00022575 -0.018395 -9.7722E-06 531.2482972911863 34.602 1.2192 32.325 31.609 32.828 -2.2766 97 34 5 0 0 0 0.55979 1 6076 6076 15.847 2.8047 1 42673000 54261 6517 35918 35939 53100 53100 -0.045283146957672216 YAYLSDRSS 9 Unmodified _YAYLSDRSS_ 0 0 0 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 531.248546 1060.48254 0.11126 5.9104E-05 0.019915 1.058E-05 0.13117 6.9684E-05 531.2485205078135 32.174 0.83122 32.174 31.776 32.607 0 -0.13691 0.00022128 NaN 15.847 72 23 4 NaN NaN NaN NaN 0 NaN NaN 0 52332000 54262 6517 35918 35939 -0.045283146957672216 YAYLSDRSS 9 Unmodified _YAYLSDRSS_ 0 0 0 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 531.248546 1060.48254 -0.16084 -8.5446E-05 0.22321 0.00011858 0.062367 3.3132E-05 531.2486163955186 34.719 0.69654 32.402 32.049 32.746 -2.3175 0.091217 0.00043728 NaN 15.847 80 19 6 NaN NaN NaN NaN 0 NaN NaN 0 52059000 54263 6517 35918 35939 -0.045283146957672216 YAYLSDRSS 9 Unmodified _YAYLSDRSS_ 0 0 0 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 531.248546 1060.48254 0.45654 0.00024254 -0.43017 -0.00022853 0.026367 1.4007E-05 531.2482995407365 34.594 1.011 32.341 31.87 32.881 -2.2527 0.030745 -0.00025693 NaN 15.847 99 28 5 NaN NaN NaN NaN 0 NaN NaN 0 51400000 54264 6517 35918 35939 -0.045283146957672216 YAYLSDRSS 9 Unmodified _YAYLSDRSS_ 0 0 0 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 531.248546 1060.48254 0.40655 0.00021598 -0.42495 -0.00022575 -0.018395 -9.7722E-06 531.2482972911863 34.602 1.2192 32.325 31.609 32.828 -2.2766 0.014946 -0.00025138 NaN 15.847 97 34 5 NaN NaN NaN NaN 0 NaN NaN 0 42673000 54265 6517 35918 35939 -0.045283146957672216 YAYRERREKLH 11 Unmodified _YAYRERREKLH_ 0 0 0 ENSG00000105261|ENST00000633214|OVOL3 ENSG00000105261|ENST00000633214|OVOL3 ENSG00000105261|ENST00000633214|OVOL3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2083435058594 4 380.957475 1519.80079 -0.5914 -0.0002253 -0.80547 -0.00030685 -1.3969 -0.00053215 380.9572000213636 77.543 0.45135 73.884 73.573 74.024 -3.6588 18 12 2 0 0 0 0.66298 1 14719 14719 0.094841 0 1 1295300 54266 2292 35919 35940 53101 53101 0.061685322803668896 YCCCCLCC 8 Unmodified _YCCCCLCC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 457.2062072753906 2 457.113809 912.213064 NaN NaN NaN NaN NaN NaN NaN 66.943 1 66.943 66.443 67.443 0 0 0 0 0.2396 1 12936 12936 0 0 1 54267 2039 35920 35941 53102 53102 -0.246553937673184 YCCCCLCC 8 Unmodified _YCCCCLCC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 456.7420959472656 2 457.113809 912.213064 NaN NaN NaN NaN NaN NaN NaN 67.818 1 64.322 63.822 64.822 -3.4965 0 0 0 0.2396 1 12732 12732 0 0 1 54268 2039 35920 35941 53103 53103 -0.246553937673184 YCCEELMKIE 10 Unmodified _YCCEELMKIE_ 0 0 0 RTKN2|p.H400Y|1|0.43|ENSG00000182010|chr10:62199850-62199850|G/A|missense_variant RTKN2|p.H400Y|1|0.43|ENSG00000182010|chr10:62199850-62199850|G/A|missense_variant RTKN2|p.H400Y|1|0.43|ENSG00000182010|chr10:62199850-62199850|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7687377929688 2 630.769085 1259.52362 NaN NaN NaN NaN NaN NaN NaN 14.255 1 13.141 12.641 13.641 -1.1142 0 0 0 2.8426 1 2126 2126 0.043787 0 1 54269 25629 35921 35942 53104 53104 -0.09576381034457881 YCCEHIPKM 9 Unmodified _YCCEHIPKM_ 0 0 0 REV__nc|ENSG00000151835|Q9NZJ4-2|SACS REV__nc|ENSG00000151835|Q9NZJ4-2|SACS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2054443359375 3 375.162624 1122.46604 0.089325 3.3512E-05 0.97473 0.00036568 1.0641 0.0003992 375.49700022753336 20.613 0.49107 19.217 18.863 19.354 -1.3966 15 13 2 0 0 0 0.77797 1 3437 3437 2.7352 0 1 551110 + 54270 17086 35922 35943 53105 53105 -0.09029178449350184 YCCEHIPKM 9 Unmodified _YCCEHIPKM_ 0 0 0 REV__nc|ENSG00000151835|Q9NZJ4-2|SACS REV__nc|ENSG00000151835|Q9NZJ4-2|SACS MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 375.162624 1122.46604 -0.23911 -8.9707E-05 0.17473 6.5553E-05 -0.064382 -2.4154E-05 375.497213443299 20.478 0.38894 19.093 18.952 19.341 -1.3847 -0.061641 -0.00049648 NaN 2.7352 32 10 4 NaN NaN NaN NaN 0 NaN NaN 0 4410300 + 54271 17086 35922 35943 -0.09029178449350184 YCCESSCC 8 Unmodified _YCCESSCC_ 0 0 0 ENSG00000198271|ENST00000343246|KRTAP4-5 ENSG00000198271|ENST00000343246|KRTAP4-5 ENSG00000198271|ENST00000343246|KRTAP4-5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 449.1146545410156 2 449.115917 896.217281 NaN NaN NaN NaN NaN NaN NaN 159.63 1 154.84 154.34 155.34 -4.7952 0 0 0 0.21486 1 31740 31740 0.79363 0.79363 1 54272 7440 35923 35944 53106 53106 -0.23497889748375655 YCCESSCC 8 Unmodified _YCCESSCC_ 0 0 0 ENSG00000198271|ENST00000343246|KRTAP4-5 ENSG00000198271|ENST00000343246|KRTAP4-5 ENSG00000198271|ENST00000343246|KRTAP4-5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.1155090332031 2 449.115917 896.217281 NaN NaN NaN NaN NaN NaN NaN 146.05 1 140.94 140.44 141.44 -5.1108 0 0 0 0.21486 1 28241 28241 0.79363 0.79363 1 54273 7440 35923 35944 53107 53107 -0.23497889748375655 YCCESSCC 8 Unmodified _YCCESSCC_ 0 0 0 ENSG00000198271|ENST00000343246|KRTAP4-5 ENSG00000198271|ENST00000343246|KRTAP4-5 ENSG00000198271|ENST00000343246|KRTAP4-5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 449.1140441894531 2 449.115917 896.217281 NaN NaN NaN NaN NaN NaN NaN 144.19 1 139.25 138.75 139.75 -4.9445 0 0 0 0.21486 1 27844 27844 0.79363 0.79363 1 54274 7440 35923 35944 53108 53108 -0.23497889748375655 YCEGNDVY 8 Unmodified _YCEGNDVY_ 0 0 0 ENSG00000129484|ENST00000429687|PARP2;nc|ENSG00000129484|Q9UGN5|PARP2 ENSG00000129484|ENST00000429687|PARP2 ENSG00000129484|ENST00000429687|PARP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7722473144531 2 481.68165 961.348747 NaN NaN NaN NaN NaN NaN NaN 150.97 1 146.21 145.71 146.71 -4.7523 0 0 0 0.21486 1 29987 29987 2.8892 0 1 54275 3567 35924 35945 53109 53109 -0.13347296792983343 YCEMRKQQHLF 11 Unmodified _YCEMRKQQHLF_ 0 0 0 REV__ENSG00000078177|ENST00000261435|N4BP2 REV__ENSG00000078177|ENST00000261435|N4BP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 494.89501953125 3 494.904201 1481.69077 NaN NaN NaN NaN NaN NaN NaN 10.606 1 9.5393 9.0393 10.039 -1.0664 0 0 0 0.23698 1 1156 1156 0.094841 0 1 + 54276 14375 35925 35946 53110 53110 -0.030803523746953942 YCFRDYPLPW 10 Unmodified _YCFRDYPLPW_ 0 0 0 REV__KLHL34|p.R555W|1|0.27|ENSG00000185915|chrX:21656126-21656126|G/A|missense_variant REV__KLHL34|p.R555W|1|0.27|ENSG00000185915|chrX:21656126-21656126|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.87744140625 3 453.877869 1358.61178 NaN NaN NaN NaN NaN NaN NaN 10.927 1 10.023 9.5234 10.523 -0.90401 0 0 0 0.22588 1 1409 1409 0.15932 0 1 + 54277 23726 35926 35947 53111 53111 -0.053182563373184166 YCGNCPCF 8 Unmodified _YCGNCPCF_ 0 0 0 ENST00000432246.1_1_10:93557707-93557869:-|nuORF ENST00000432246.1_1_10:93557707-93557869:-|nuORF ENST00000432246.1_1_10:93557707-93557869:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.748291015625 2 453.650784 905.287016 NaN NaN NaN NaN NaN NaN NaN 14.303 1 13.093 12.593 13.593 -1.2106 0 0 0 0.21486 1 1884 1884 0.79363 0 1 54278 9795 35927 35948 53112 53112 -0.16941643017469232 YCKFALLLVL 10 Unmodified _YCKFALLLVL_ 0 0 0 ENSG00000147119|ENST00000276055|CHST7 ENSG00000147119|ENST00000276055|CHST7 ENSG00000147119|ENST00000276055|CHST7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 395.29962158203125 3 394.903356 1181.68824 NaN NaN NaN NaN NaN NaN NaN 13.396 1 12.386 11.886 12.886 -1.0098 0 0 0 0.22588 1 1939 1939 0.69767 0 1 54279 4681 35928 35949 53113 53113 0.1046616722996987 YCKNYIKWA 9 Unmodified _YCKNYIKWA_ 0 0 0 REV__TTC39C|p.H227Tfs*31|1|0.38|ENSG00000168234|chr18:24080798-24080798|T/-|frameshift_variant REV__TTC39C|p.H227Tfs*31|1|0.38|ENSG00000168234|chr18:24080798-24080798|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 397.0095520019531 3 396.867193 1187.57975 NaN NaN NaN NaN NaN NaN NaN 9.3223 1 8.528 8.028 9.028 -0.79424 0 0 0 0.23508 1 1066 1066 0.26902 0 1 + 54280 18009 35929 35950 53114 53114 -0.006536240204468413 YCKQKYPEQQ 10 Unmodified _YCKQKYPEQQ_ 0 0 0 ENST00000483821.1_1_6:33162461-33163032:-|nuORF;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB ENST00000483821.1_1_6:33162461-33163032:-|nuORF ENST00000483821.1_1_6:33162461-33163032:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 438.8948669433594 3 438.876417 1313.60742 NaN NaN NaN NaN NaN NaN NaN 11.696 1 11.696 11.196 12.196 0 0 0 0 0.22588 1 1572 1572 0.15932 0 1 54281 10421 35930 35951 53115 53115 -0.036837655508861644 YCKQKYPEQQ 10 Unmodified _YCKQKYPEQQ_ 0 0 0 ENST00000483821.1_1_6:33162461-33163032:-|nuORF;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB ENST00000483821.1_1_6:33162461-33163032:-|nuORF ENST00000483821.1_1_6:33162461-33163032:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 438.8760070800781 3 438.876417 1313.60742 NaN NaN NaN NaN NaN NaN NaN 4.5387 1 3.9124 3.4124 4.4124 -0.62626 0 0 0 0.22588 1 105 105 0.15932 0 1 54282 10421 35930 35951 53116 53116 -0.036837655508861644 YCKQKYPEQQ 10 Unmodified _YCKQKYPEQQ_ 0 0 0 ENST00000483821.1_1_6:33162461-33163032:-|nuORF;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB ENST00000483821.1_1_6:33162461-33163032:-|nuORF ENST00000483821.1_1_6:33162461-33163032:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 438.8765563964844 3 438.876417 1313.60742 NaN NaN NaN NaN NaN NaN NaN 5.7385 1 5.1123 4.6123 5.6123 -0.62626 0 0 0 0.22588 1 341 341 0.15932 0 1 54283 10421 35930 35951 53117 53117 -0.036837655508861644 YCKQKYPEQQ 10 Unmodified _YCKQKYPEQQ_ 0 0 0 ENST00000483821.1_1_6:33162461-33163032:-|nuORF;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB ENST00000483821.1_1_6:33162461-33163032:-|nuORF ENST00000483821.1_1_6:33162461-33163032:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 438.8756103515625 3 438.876417 1313.60742 NaN NaN NaN NaN NaN NaN NaN 179.16 1 174.37 173.87 174.87 -4.7898 0 0 0 0.22588 1 36659 36659 0.15932 0 1 54284 10421 35930 35951 53118 53118 -0.036837655508861644 YCLWKFRCIH 10 Unmodified _YCLWKFRCIH_ 0 0 0 REV__POMGNT2|p.R77H|1|0.42|ENSG00000144647|chr3:43081202-43081202|C/T|missense_variant REV__POMGNT2|p.R77H|1|0.42|ENSG00000144647|chr3:43081202-43081202|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 456.88555908203125 3 456.894977 1367.6631 NaN NaN NaN NaN NaN NaN NaN 10.269 1 9.3645 8.8645 9.8645 -0.90401 0 0 0 0.22588 1 1270 1270 0.15932 0 1 + 54285 24496 35931 35952 53119 53119 -0.006022108442493845 YCMDFDGF 8 Unmodified _YCMDFDGF_ 0 0 0 ENST00000429979.5_2_13:46952026-46952128:-|nuORF;ENST00000378784.8_1_13:46946296-46952128:-|nuORF ENST00000429979.5_2_13:46952026-46952128:-|nuORF ENST00000429979.5_2_13:46952026-46952128:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 499.16864013671875 2 499.175146 996.33574 NaN NaN NaN NaN NaN NaN NaN 148.2 1 148.2 147.7 148.7 0 0 0 0 0.21486 1 29656 29656 2.8892 0.58649 1 54286 9283 35932 35953 53120 53120 -0.1625745117671613 YCMEEEGCM 9 Unmodified _YCMEEEGCM_ 0 0 0 nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5 nc|ENSG00000171680|O94827-4|PLEKHG5 nc|ENSG00000171680|O94827-4|PLEKHG5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7796630859375 2 547.668514 1093.32247 NaN NaN NaN NaN NaN NaN NaN 165.84 1 161.05 160.55 161.55 -4.7898 0 0 0 0.19631 1 33251 33251 0.20686 0 1 54287 6159 35933 35954 53121 53121 -0.2204539334261426 YCNSECNCDE 10 Unmodified _YCNSECNCDE_ 0 0 0 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7;ENSG00000111700|ENST00000381545|SLCO1B3;nc|ENSG00000111700|Q9NPD5-2|SLCO1B3;nc|ENSG00000205754|G3V0H7|SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2695922851562 2 590.173006 1178.33146 NaN NaN NaN NaN NaN NaN NaN 142.69 1 138.03 137.53 138.53 -4.656 0 0 0 2.8426 1 28206 28206 0 0 1 54288 2638 35934 35955 53122 53122 -0.25057328452612637 YCNSECNCDE 10 Unmodified _YCNSECNCDE_ 0 0 0 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7;ENSG00000111700|ENST00000381545|SLCO1B3;nc|ENSG00000111700|Q9NPD5-2|SLCO1B3;nc|ENSG00000205754|G3V0H7|SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2482299804688 2 590.173006 1178.33146 NaN NaN NaN NaN NaN NaN NaN 139.84 1 134.89 134.39 135.39 -4.952 0 0 0 0.22588 1 26907 26907 0 0 1 54289 2638 35934 35955 53123 53123 -0.25057328452612637 YCRQFWEND 9 Unmodified _YCRQFWEND_ 0 0 0 REV__ENST00000309964.8_1_4:56294512-56294707:-|nuORF REV__ENST00000309964.8_1_4:56294512-56294707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7579345703125 2 630.758755 1259.50296 NaN NaN NaN NaN NaN NaN NaN 6.3715 1 5.7452 5.2452 6.2452 -0.62626 0 0 0 0.23508 1 466 466 0.6015 0 1 + 54290 20474 35935 35956 53124 53124 -0.11641467307595121 YCRQFWEND 9 Unmodified _YCRQFWEND_ 0 0 0 REV__ENST00000309964.8_1_4:56294512-56294707:-|nuORF REV__ENST00000309964.8_1_4:56294512-56294707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7578735351562 2 630.758755 1259.50296 NaN NaN NaN NaN NaN NaN NaN 11.319 1 10.252 9.7525 10.752 -1.0664 0 0 0 0.19624 1 1277 1277 0 0 1 + 54291 20474 35935 35956 53125 53125 -0.11641467307595121 YCRQFWEND 9 Unmodified _YCRQFWEND_ 0 0 0 REV__ENST00000309964.8_1_4:56294512-56294707:-|nuORF REV__ENST00000309964.8_1_4:56294512-56294707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7578735351562 2 630.758755 1259.50296 NaN NaN NaN NaN NaN NaN NaN 11.331 1 10.264 9.7643 10.764 -1.0664 0 0 0 0.23508 1 1278 1278 0.6015 0 1 + 54292 20474 35935 35956 53126 53126 -0.11641467307595121 YCRQFWEND 9 Unmodified _YCRQFWEND_ 0 0 0 REV__ENST00000309964.8_1_4:56294512-56294707:-|nuORF REV__ENST00000309964.8_1_4:56294512-56294707:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7577514648438 2 630.758755 1259.50296 NaN NaN NaN NaN NaN NaN NaN 23.673 1 21.884 21.384 22.384 -1.7886 0 0 0 0.23508 1 3818 3818 1.8442 0 1 + 54293 20474 35935 35956 53127 53127 -0.11641467307595121 YCRYDNYADSL 11 Unmodified _YCRYDNYADSL_ 0 0 0 nc|ENSG00000150510|Q86V42-3|FAM124A;ENSG00000150510|ENST00000322475|FAM124A;nc|ENSG00000150510|Q86V42-2|FAM124A nc|ENSG00000150510|Q86V42-3|FAM124A nc|ENSG00000150510|Q86V42-3|FAM124A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.52728271484375 3 461.527565 1381.56087 NaN NaN NaN NaN NaN NaN NaN 139.41 1 139.41 138.91 139.91 0 0 0 0 0.23689 1 27708 27708 2.8433 0.21205 1 54294 4826 35936 35957 53128 53128 -0.11465250172841479 YCSKTHNRHI 10 Unmodified _YCSKTHNRHI_ 0 0 0 REV__ENST00000404752.5_1_2:48822425-48822539:+|nuORF REV__ENST00000404752.5_1_2:48822425-48822539:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 629.80908203125 2 629.809113 1257.60367 NaN NaN NaN NaN NaN NaN NaN 10.946 1 10.946 10.446 11.446 0 0 0 0 0.22588 1 1412 1412 0.45834 0 1 + 54295 21378 35937 35958 53129 53129 -0.014823905340790589 YCTGEQKFLR 10 Unmodified _YCTGEQKFLR_ 0 0 0 REV__ENSG00000094804|ENST00000209728|CDC6 REV__ENSG00000094804|ENST00000209728|CDC6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7599487304688 2 622.808248 1243.60194 NaN NaN NaN NaN NaN NaN NaN 120.56 1 115.91 115.41 116.41 -4.645 0 0 0 0.22588 1 23140 23140 8.7454 3.0136 1 + 54296 14597 35938 35959 53130 53130 -0.010114443427028164 YCTRLMFL 8 Unmodified _YCTRLMFL_ 0 0 0 ENST00000377767.8_1_13:73355104-73355759:-|nuORF ENST00000377767.8_1_13:73355104-73355759:-|nuORF ENST00000377767.8_1_13:73355104-73355759:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6904296875 2 523.761723 1045.50889 NaN NaN NaN NaN NaN NaN NaN 135.03 1 130.13 129.63 130.63 -4.8951 0 0 0 0.23538 1 25936 25936 0.25148 0.12366 1 54297 9267 35939 35960 53131 53131 -0.012040403296396107 YCVNKYLY 8 Unmodified _YCVNKYLY_ 0 0 0 REV__ENSG00000118322|ENST00000327245|ATP10B REV__ENSG00000118322|ENST00000327245|ATP10B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.27783203125 2 533.257328 1064.5001 NaN NaN NaN NaN NaN NaN NaN 31.19 1 29.041 28.541 29.541 -2.1483 0 0 0 0.2343 1 5366 5366 1.7423 0 1 + 54298 15548 35940 35961 53132 53132 -0.029566906944637594 YCVRLEACTDW 11 Unmodified _YCVRLEACTDW_ 0 0 0 REV__L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|54|1|anti-sense REV__L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|54|1|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.76409912109375 3 453.533774 1357.57949 NaN NaN NaN NaN NaN NaN NaN 17.034 1 15.818 15.318 16.318 -1.2159 0 0 0 0.23698 1 2711 2711 0.45452 0 1 + 54299 23777 35941 35962 53133 53133 -0.08499411802631585 YCVSFFYHMY 10 Unmodified _YCVSFFYHMY_ 0 0 0 ENSG00000112139|ENST00000434837|MDGA1;nc|ENSG00000112139|Q8NFP4-2|MDGA1 ENSG00000112139|ENST00000434837|MDGA1 ENSG00000112139|ENST00000434837|MDGA1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7642822265625 3 453.856077 1358.5464 NaN NaN NaN NaN NaN NaN NaN 13.146 1 13.146 12.646 13.646 0 0 0 0 0.22588 1 1879 1879 0.15932 0 1 54300 2671 35942 35963 53134 53134 -0.11852993854677152 YCYHDDTENSL 11 Unmodified _YCYHDDTENSL_ 0 0 0 ENSG00000130449|ENST00000252744|ZSWIM6;ZSWIM6|p.E613Rfs*5|1|0.2|ENSG00000130449|chr5:61526387-61526388|-/A|frameshift_variant;ZSWIM6|p.E613Sfs*7|1|0.32|ENSG00000130449|chr5:61526388-61526388|A/-|frameshift_variant ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.84332275390625 3 453.843442 1358.5085 NaN NaN NaN NaN NaN NaN NaN 11.092 1 10.188 9.6882 10.688 -0.90401 0 0 0 0.23698 1 1443 1443 0.45452 0.29519 1 54301 3609 35943 35964 53135 53135 -0.15641833306426633 YCYVPDDVWT 10 Unmodified _YCYVPDDVWT_ 0 0 0 NTSR2|p.A327V|1|0.47|ENSG00000169006|chr2:11660052-11660052|G/A|missense_variant NTSR2|p.A327V|1|0.47|ENSG00000169006|chr2:11660052-11660052|G/A|missense_variant NTSR2|p.A327V|1|0.47|ENSG00000169006|chr2:11660052-11660052|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7657470703125 2 630.765714 1259.51688 NaN NaN NaN NaN NaN NaN NaN 178.71 1 178.71 178.21 179.21 0 0 0 0 0.22588 1 37016 37016 1.6526 0.32309 1 54302 12714 35944 35965 53136 53136 -0.10250234599175201 YDDDDDDDDD 10 Unmodified _YDDDDDDDDD_ 0 0 0 REV__ENSG00000273841|ENST00000217893|TAF9 REV__ENSG00000273841|ENST00000217893|TAF9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 609.1699829101562 2 609.165467 1216.31638 NaN NaN NaN NaN NaN NaN NaN 28.716 1 28.716 28.216 29.216 0 0 0 0 0.22588 1 5109 5109 0.45834 0 1 + 54303 19924 35945 35966 53137 53137 -0.28312502243602466 YDDLFKQWLRW 11 Unmodified _YDDLFKQWLRW_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3948364257812 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 115.52 1 110.95 110.45 111.45 -4.5614 0 0 0 0.22632 1 22178 22178 0.00056442 0 1 + 54304 14106;16048 35946 35967 53138 53138 0.015960934430268026 YDDLFKQWLRW 11 Unmodified _YDDLFKQWLRW_ 0 0 0 REV__ENSG00000054654|ENST00000555002|SYNE2;REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000054654|ENST00000555002|SYNE2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3971557617188 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 134.12 1 129.3 128.8 129.8 -4.8175 0 0 0 0.22632 1 25821 25821 0.026206 0 1 + 54305 14106;16048 35946 35967 53139 53139 0.015960934430268026 YDEIAMKIAEE 11 Unmodified _YDEIAMKIAEE_ 0 0 0 REV__tr|U7T0F4|U7T0F4_FUSNUFeSclusterassemblyscaffoldproteinNifUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00796PE=3SV=1 REV__tr|U7T0F4|U7T0F4_FUSNUFeSclusterassemblyscaffoldproteinNifUOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00796PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.903564453125 3 437.876083 1310.60642 NaN NaN NaN NaN NaN NaN NaN 10.815 1 9.9113 9.4113 10.411 -0.90401 0 0 0 0.23698 1 1386 1386 0 0 1 + 54306 25266 35947 35968 53140 53140 -0.03646024710405982 YDELGVVSVT 10 Unmodified _YDELGVVSVT_ 0 0 0 REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2614135742188 2 541.274229 1080.53391 NaN NaN NaN NaN NaN NaN NaN 145 1 139.93 139.43 140.43 -5.0671 0 0 0 0.22588 1 27998 27998 9.3831 0.63772 1 + 54307 14485 35948 35969 53141 53141 -0.0031399072170188447 YDGRGHLY 8 Unmodified _YDGRGHLY_ 0 0 0 SFSWAP|p.H81Y|1|0.24|ENSG00000061936|chr12:131714093-131714093|C/T|missense_variant SFSWAP|p.H81Y|1|0.24|ENSG00000061936|chr12:131714093-131714093|C/T|missense_variant SFSWAP|p.H81Y|1|0.24|ENSG00000061936|chr12:131714093-131714093|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2571105957031 2 490.732866 979.451179 -0.13632 -6.6898E-05 0.28921 0.00014192 0.15289 7.5026E-05 490.73295124408673 40.29 0.91239 37.8 37.474 38.386 -2.4896 60 25 3 0 0 0 0.78482 1 7272 7272 32.305 32.305 1 28409000 54308 25660 35949 35970 53142 53142 -0.039368429391970494 YDHYDYGY 8 Unmodified _YDHYDYGY_ 0 0 0 REV__nc|ENSG00000125944|O43390-4|HNRNPR REV__nc|ENSG00000125944|O43390-4|HNRNPR MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7797241210938 2 548.206347 1094.39814 NaN NaN NaN NaN NaN NaN NaN 68.975 1 68.975 68.475 69.475 0 0 0 0 0.21486 1 13343 13343 10.183 3.9776 1 + 54309 15843 35950 35971 53143 53143 -0.14528265512512917 YDIKTLFL 8 Unmodified _YDIKTLFL_ 0 0 0 ENST00000606584.5_1_13:79980478-79992024:+|nuORF ENST00000606584.5_1_13:79980478-79992024:+|nuORF ENST00000606584.5_1_13:79980478-79992024:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.1595764160156 3 338.195304 1011.56408 NaN NaN NaN NaN NaN NaN NaN 93.238 1 93.238 92.738 93.738 0 0 0 0 0.21486 1 18241 18241 1.6526 0.45928 1 54310 11746 35951 35972 53144 53144 0.058764127341419226 YDIMRRSGP 9 Unmodified _YDIMRRSGP_ 0 0 0 REV__AMER3|p.P204Rfs*62|1|0.17|ENSG00000178171|chr2:130762678-130762678|C/-|frameshift_variant REV__AMER3|p.P204Rfs*62|1|0.17|ENSG00000178171|chr2:130762678-130762678|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7741088867188 2 547.774208 1093.53386 0.12093 6.6241E-05 -0.060635 -3.3214E-05 0.060292 3.3026E-05 547.774235471764 41.545 3.0575 39.055 37.439 40.497 -2.4896 252 86 4 0 0 0 0.62102 1 7213 7213 11.64 0.81637 1 31900000 + 54311 13037 35952 35973 53145 53145 -0.009162692026848163 YDIRDRTR 8 Unmodified _YDIRDRTR_ 0 0 0 AP3B1|p.K923Nfs*4|5|0.24|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant;nc|ENSG00000132842|O00203-3|AP3B1;ENSG00000132842|ENST00000255194|AP3B1;AP3B1|p.E758Dfs*25|1|0.05|ENSG00000132842|chr5:78110330-78110331|-/GTTGTAATTGAAGGTAAATA|frameshift_variant;ENST00000517561.1_1_5:77417682-77436990:-|nuORF AP3B1|p.K923Nfs*4|5|0.24|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant AP3B1|p.K923Nfs*4|5|0.24|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7760620117188 2 547.788704 1093.56285 NaN NaN NaN NaN NaN NaN NaN 156.41 1 156.41 155.91 156.91 0 0 0 0 0.23538 1 31379 31379 0.12286 0 1 54312 175 35953 35974 53146 53146 0.019815914179162064 YDKGLQSGNVA 11 Unmodified _YDKGLQSGNVA_ 0 0 0 REV__HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant REV__HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3294677734375 2 576.288202 1150.56185 0.40673 0.00023439 0.01852 1.0673E-05 0.42525 0.00024506 576.2880799861199 33.605 0.1732 31.389 31.319 31.492 -2.2158 6 4 2 0 0 0 0.66095 1 5868 5868 14.405 4.3315 1 450510 + 54313 18321 35954 35975 53147 53147 -0.007406677416156526 YDKGLQSGNVA 11 Unmodified _YDKGLQSGNVA_ 0 0 0 REV__HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant REV__HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 576.288202 1150.56185 -0.028142 -1.6218E-05 -0.044753 -2.5791E-05 -0.072895 -4.2009E-05 576.287965314306 33.683 0.17291 31.366 31.288 31.461 -2.3175 -0.010817 7.151E-05 NaN 14.405 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 383490 + 54314 18321 35954 35975 -0.007406677416156526 YDKGLQSGNVA 11 Unmodified _YDKGLQSGNVA_ 0 0 0 REV__HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant REV__HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.288202 1150.56185 0.32644 0.00018812 -0.19882 -0.00011458 0.12763 7.355E-05 576.2882635956189 33.522 0.20453 31.375 31.222 31.427 -2.1468 -0.0018792 -0.00010606 NaN 14.405 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 547620 + 54315 18321 35954 35975 -0.007406677416156526 YDKGLQSGNVA 11 Unmodified _YDKGLQSGNVA_ 0 0 0 REV__HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant REV__HPSE2|p.F424Lfs*28|1|0.2|ENSG00000172987|chr10:98614952-98614952|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 576.288202 1150.56185 0.40673 0.00023439 0.01852 1.0673E-05 0.42525 0.00024506 576.2880799861199 33.605 0.1732 31.389 31.319 31.492 -2.2158 0.012696 0.00014444 NaN 14.405 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 450510 + 54316 18321 35954 35975 -0.007406677416156526 YDKKNVNEL 9 Unmodified _YDKKNVNEL_ 0 0 0 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2184753417969 3 374.864506 1121.57169 0.2088 7.827E-05 -0.44305 -0.00016608 -0.23426 -8.7814E-05 374.86427004348246 64.606 0.53177 61.148 60.872 61.404 -3.4581 35 14 3 0 0 0 0.59228 1 12075 12075 13.615 4.0709 1 3226000 + 54317 15857 35955 35976 53148 53148 0.0157652026375672 YDKKRLCIL 9 Unmodified _YDKKRLCIL_ 0 0 0 REV__nc|ENSG00000163026|Q9H6R7-2|WDCP REV__nc|ENSG00000163026|Q9H6R7-2|WDCP MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3352661132812 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 58.013 1 54.807 54.307 55.307 -3.2052 0 0 0 0.23508 1 10818 10818 11.64 1.5664 1 + 54318 17544 35956 35977 53149 53149 0.08394924422009353 YDLPLFTEP 9 Unmodified _YDLPLFTEP_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7929077148438 2 547.773865 1093.53318 0.12093 6.6241E-05 0.56506 0.00030952 0.68599 0.00037576 547.774235471764 41.545 3.0575 39.055 37.439 40.497 -2.4896 252 86 4 0 0 0 0.6329 1 7219 7219 10.824 0 1 31900000 + 54319 14286 35957 35978 53150 53150 -0.00984785370769714 YDLTLLIDL 9 Unmodified _YDLTLLIDL_ 0 0 0 REV__nc|ENSG00000152952|O00469|PLOD2 REV__nc|ENSG00000152952|O00469|PLOD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2065124511719 3 360.205869 1077.59578 NaN NaN NaN NaN NaN NaN NaN 118.1 1 113.69 113.19 114.19 -4.4088 0 0 0 0.19668 1 22729 22729 1.2148 0 1 + 54320 17128 35958 35979 53151 53151 0.060083606974330905 YDLTLLIDL 9 Unmodified _YDLTLLIDL_ 0 0 0 REV__nc|ENSG00000152952|O00469|PLOD2 REV__nc|ENSG00000152952|O00469|PLOD2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2066955566406 3 360.205869 1077.59578 NaN NaN NaN NaN NaN NaN NaN 118.32 1 113.91 113.41 114.41 -4.4088 0 0 0 0.19668 1 22768 22768 1.2148 0 1 + 54321 17128 35958 35979 53152 53152 0.060083606974330905 YDLVLEDP 8 Unmodified _YDLVLEDP_ 0 0 0 ENSG00000248383|ENST00000253807|PCDHAC1;nc|ENSG00000248383|Q9H158-2|PCDHAC1;PCDHAC1|p.E339Nfs*5|1|0.36|ENSG00000248383|chr5:140927902-140927902|C/-|frameshift_variant ENSG00000248383|ENST00000253807|PCDHAC1 ENSG00000248383|ENST00000253807|PCDHAC1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.78448486328125 2 482.237116 962.459678 NaN NaN NaN NaN NaN NaN NaN 103.86 1 103.86 103.36 104.36 0 0 0 0 0.21452 1 20413 20413 13.508 1.8676 1 54322 7891 35959 35980 53153 53153 -0.023053338132399404 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 517.0419311523438 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 7.8488 1 6.834 6.334 7.334 -1.0148 0 0 0 0.21486 1 685 685 0 0 1 54323 2907 35960 35981 53154 53154 -0.20963274352425287 YDMYYFDY 8 Unmodified _YDMYYFDY_ 0 0 0 REV__ENSG00000124302|ENST00000650847|CHST8 REV__ENSG00000124302|ENST00000650847|CHST8 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2548217773438 2 590.220608 1178.42666 0.62102 0.00036654 -1.6465 -0.00097181 -1.0255 -0.00060527 590.2200716773532 105.42 0.45583 105.42 105.04 105.49 0 14 12 2 0 0 0 8448 1 20653 20653 0.62683 0 1 1462800 + 54324 15772 35961 35982 53155 53155 -0.15541283927586846 YDMYYFDY 8 Unmodified _YDMYYFDY_ 0 0 0 REV__ENSG00000124302|ENST00000650847|CHST8 REV__ENSG00000124302|ENST00000650847|CHST8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2587280273438 2 590.220608 1178.42666 NaN NaN NaN NaN NaN NaN NaN 138.15 1 133.51 133.01 134.01 -4.6413 0 0 0 0.23749 1 27271 27271 0.62683 0 1 + 54325 15772 35961 35982 53156 53156 -0.15541283927586846 YDNSSVIGT 9 Unmodified _YDNSSVIGT_ 0 0 0 tr|U7SHC7|U7SHC7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02262PE=4SV=1 tr|U7SHC7|U7SHC7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02262PE=4SV=1 tr|U7SHC7|U7SHC7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02262PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7236633300781 2 478.221997 954.429441 0.060639 2.8999E-05 0.43329 0.00020721 0.49392 0.00023621 478.2221342930243 56.569 0.91257 53.379 52.948 53.861 -3.1895 62 25 3 0 0 0 0.42844 1 10418 10418 24.021 1.2843 1 16529000 54326 25918 35962 35983 53157 53157 -0.04959692478405486 YDPSSIEGL 9 Unmodified _YDPSSIEGL_ 0 0 0 REV__tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1 REV__tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27374267578125 2 490.732197 979.449842 -0.034114 -1.6741E-05 0.050381 2.4724E-05 0.016267 7.9825E-06 490.7321632974585 103.79 0.85099 99.573 99.181 100.03 -4.2183 41 24 2 0 0 0 0.60698 1 20358 20358 23.148 1.4018 1 3730100 + 54327 25307 35963 35984 53158 53158 -0.04070521818596262 YDQAFQYYY 9 Unmodified _YDQAFQYYY_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7640991210938 2 630.764029 1259.5135 NaN NaN NaN NaN NaN NaN NaN 78.282 1 78.282 77.782 78.782 0 0 0 0 0.19691 1 15235 15235 0.40827 0.3444 1 54328 7480 35964 35985 53159 53159 -0.10587161381499754 YDQGKRVQW 9 Unmodified _YDQGKRVQW_ 0 0 0 ENST00000473501.1_1_3:196753297-196754890:-|nuORF ENST00000473501.1_1_3:196753297-196754890:-|nuORF ENST00000473501.1_1_3:196753297-196754890:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2501220703125 2 590.298904 1178.58326 NaN NaN NaN NaN NaN NaN NaN 150.86 1 145.62 145.12 146.12 -5.2365 0 0 0 0.23508 1 29236 29236 11.64 2.2929 1 54329 10241 35965 35986 53160 53160 0.0011076207774749491 YDRSYMPY 8 Unmodified _YDRSYMPY_ 0 0 0 REV__ENSG00000084090|ENST00000337288|STARD7 REV__ENSG00000084090|ENST00000337288|STARD7 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7882080078125 2 547.734217 1093.45388 NaN NaN NaN NaN NaN NaN NaN 160.95 1 160.95 160.45 161.45 0 0 0 0 0.21486 1 32320 32320 5.7604 0.52976 1 + 54330 14462 35966 35987 53161 53161 -0.08910755596525632 YDSEHENS 8 Unmodified _YDSEHENS_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant;PCM1|p.E543K|1|0.14|ENSG00000078674|chr8:17956758-17956758|G/A|missense_variant nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26025390625 2 490.683236 979.351919 NaN NaN NaN NaN NaN NaN NaN 162.62 1 157.83 157.33 158.33 -4.7898 0 0 0 0.21486 1 32365 32365 5.2307 0 1 54331 1583 35967 35988 53162 53162 -0.13858330414598186 YDSNTFDYDRY 11 Unmodified _YDSNTFDYDRY_ 0 0 0 REV__tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1 REV__tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 486.8772277832031 3 486.865123 1457.57354 NaN NaN NaN NaN NaN NaN NaN 10.425 1 10.425 9.9252 10.925 0 0 0 0 0.23698 1 1302 1302 0 0 1 + 54332 25065 35968 35989 53163 53163 -0.13694515508950644 YDSVQVYGY 9 Unmodified _YDSVQVYGY_ 0 0 0 nc|ENSG00000139880|Q86UP0-3|CDH24;ENSG00000139880|ENST00000487137|CDH24;nc|ENSG00000139880|Q86UP0|CDH24 nc|ENSG00000139880|Q86UP0-3|CDH24 nc|ENSG00000139880|Q86UP0-3|CDH24 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.786865234375 2 547.245472 1092.47639 0.63074 0.00034517 -0.43906 -0.00024027 0.19168 0.0001049 547.245135322363 77.29 0.65736 77.29 76.944 77.602 0 45 18 3 0 0 0 0.36931 1 14977 14977 27.629 2.2295 1 6239300 54333 4269 35969 35990 53164 53164 -0.06614832927266434 YDSVQVYGY 9 Unmodified _YDSVQVYGY_ 0 0 0 nc|ENSG00000139880|Q86UP0-3|CDH24;ENSG00000139880|ENST00000487137|CDH24;nc|ENSG00000139880|Q86UP0|CDH24 nc|ENSG00000139880|Q86UP0-3|CDH24 nc|ENSG00000139880|Q86UP0-3|CDH24 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77294921875 2 547.245472 1092.47639 0.04655 2.5474E-05 0.18542 0.00010147 0.23197 0.00012694 547.2455105619425 81.461 0.70058 77.622 77.261 77.961 -3.8392 47 19 4 0 0 0 0.27332 1 15471 15471 43.772 0 1 7901100 54334 4269 35969 35990 53165 53165 -0.06614832927266434 YDTKIRDLK 9 Unmodified _YDTKIRDLK_ 0 0 0 REV__SERPINB12|p.S253Pfs*12|1|0.07|ENSG00000166634|chr18:63565555-63565556|-/CCAA|frameshift_variant REV__SERPINB12|p.S253Pfs*12|1|0.07|ENSG00000166634|chr18:63565555-63565556|-/CCAA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3280639648438 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 57.464 1 54.57 54.07 55.07 -2.8944 0 0 0 0.19451 1 11028 11028 0.20686 0.13359 1 + 54335 17862 35970 35991 53166 53166 0.06533086051786086 YDVDIKPEK 9 Unmodified _YDVDIKPEK_ 0 0 0 AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant;ENSG00000134698|ENST00000373210|AGO4 AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 553.7923583984375 2 553.790047 1105.56554 NaN NaN NaN NaN NaN NaN NaN 164.28 1 159.24 158.74 159.74 -5.0446 0 0 0 0.23508 1 32029 32029 6.2058 0.47393 1 54336 99 35971 35992 53167 53167 0.01698002032230761 YDVINAFEN 9 Unmodified _YDVINAFEN_ 0 0 0 ENSG00000143473|ENST00000271751|KCNH1;nc|ENSG00000143473|O95259-2|KCNH1;KCNH1|p.G827Afs*48|1|0.38|ENSG00000143473|chr1:210683771-210683771|C/-|frameshift_variant ENSG00000143473|ENST00000271751|KCNH1 ENSG00000143473|ENST00000271751|KCNH1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.774169921875 2 542.750921 1083.48729 0.21732 0.00011795 -1.0738 -0.00058279 -0.85645 -0.00046484 542.7509887128731 88.898 0.62939 88.898 88.613 89.243 0 28 17 3 0 0 0 0.62102 1 17338 17338 11.64 1.4569 1 2483200 54337 4493 35972 35993 53168 53168 -0.0511143055298362 YDVINAFEN 9 Unmodified _YDVINAFEN_ 0 0 0 ENSG00000143473|ENST00000271751|KCNH1;nc|ENSG00000143473|O95259-2|KCNH1;KCNH1|p.G827Afs*48|1|0.38|ENSG00000143473|chr1:210683771-210683771|C/-|frameshift_variant ENSG00000143473|ENST00000271751|KCNH1 ENSG00000143473|ENST00000271751|KCNH1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 542.750921 1083.48729 0.21732 0.00011795 -1.0738 -0.00058279 -0.85645 -0.00046484 542.7509887128731 88.898 0.62939 88.898 88.613 89.243 0 -0.24853 -0.00072219 NaN 11.64 28 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2483200 54338 4493 35972 35993 -0.0511143055298362 YDVINAFEN 9 Unmodified _YDVINAFEN_ 0 0 0 ENSG00000143473|ENST00000271751|KCNH1;nc|ENSG00000143473|O95259-2|KCNH1;KCNH1|p.G827Afs*48|1|0.38|ENSG00000143473|chr1:210683771-210683771|C/-|frameshift_variant ENSG00000143473|ENST00000271751|KCNH1 ENSG00000143473|ENST00000271751|KCNH1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 542.750921 1083.48729 0.22515 0.0001222 -0.42617 -0.0002313 -0.20102 -0.0001091 542.7506786839306 93.256 0.5517 89.265 89.002 89.553 -3.9907 0.11804 -1.9228E-05 NaN 11.64 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3691400 54339 4493 35972 35993 -0.0511143055298362 YDVINAFEN 9 Unmodified _YDVINAFEN_ 0 0 0 ENSG00000143473|ENST00000271751|KCNH1;nc|ENSG00000143473|O95259-2|KCNH1;KCNH1|p.G827Afs*48|1|0.38|ENSG00000143473|chr1:210683771-210683771|C/-|frameshift_variant ENSG00000143473|ENST00000271751|KCNH1 ENSG00000143473|ENST00000271751|KCNH1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 542.750921 1083.48729 0.2467 0.0001339 -0.1915 -0.00010394 0.055206 2.9963E-05 542.7507371091829 93.359 0.64444 89.216 88.839 89.483 -4.1435 0.069051 0.00023551 NaN 11.64 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3455400 54340 4493 35972 35993 -0.0511143055298362 YDVINAFEN 9 Unmodified _YDVINAFEN_ 0 0 0 ENSG00000143473|ENST00000271751|KCNH1;nc|ENSG00000143473|O95259-2|KCNH1;KCNH1|p.G827Afs*48|1|0.38|ENSG00000143473|chr1:210683771-210683771|C/-|frameshift_variant ENSG00000143473|ENST00000271751|KCNH1 ENSG00000143473|ENST00000271751|KCNH1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 542.750921 1083.48729 0.15988 8.6773E-05 -0.29832 -0.00016191 -0.13845 -7.5141E-05 542.7506355192724 93.052 0.65231 89.208 88.883 89.535 -3.844 0.061444 0.00011955 NaN 11.64 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3263600 54341 4493 35972 35993 -0.0511143055298362 YDVRNITGERR 11 Unmodified _YDVRNITGERR_ 0 0 0 REV__ENST00000576089.1_1_6:125581120-125581456:+|nuORF REV__ENST00000576089.1_1_6:125581120-125581456:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2445983886719 3 460.24438 1377.71131 NaN NaN NaN NaN NaN NaN NaN 94.438 1 90.247 89.747 90.747 -4.1911 0 0 0 0.22632 1 18014 18014 0.03141 0 1 + 54342 23208 35973 35994 53169 53169 0.0375627760097359 YDVYETYIN 9 Unmodified _YDVYETYIN_ 0 0 0 REV__tr|U7T313|U7T313_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00354PE=4SV=1 REV__tr|U7T313|U7T313_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00354PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2643432617188 2 590.263862 1178.51317 0.35731 0.0002109 -0.61526 -0.00036317 -0.25796 -0.00015226 590.2639406619761 96.992 0.97495 96.992 96.598 97.573 0 79 27 4 0 0 0 0.5428 1 18949 18949 4.897 4.2389 1 10698000 + 54343 25345 35974 35995 53170 53170 -0.06894581101369113 YDWRTNEVK 9 Unmodified _YDWRTNEVK_ 0 0 0 REV__ENST00000469173.1_1_1:174976108-174977843:+|nuORF REV__ENST00000469173.1_1_1:174976108-174977843:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 404.3085632324219 3 404.199889 1209.57784 -0.28649 -0.0001158 0.5692 0.00023007 0.28271 0.00011427 404.53434694068784 27.572 0.3568 25.576 25.502 25.859 -1.9962 14 9 2 0 0 0 0.87708 1 4605 4605 2.086 1.1237 1 1435500 + 54344 15472 35975 35996 53171 53171 -0.018569615047454135 YDWRTNEVK 9 Unmodified _YDWRTNEVK_ 0 0 0 REV__ENST00000469173.1_1_1:174976108-174977843:+|nuORF REV__ENST00000469173.1_1_1:174976108-174977843:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 404.199889 1209.57784 0.045685 1.8466E-05 3.5067 0.0014174 3.5524 0.0014359 404.2012157916602 25.488 0.55341 25.488 25.22 25.774 0 -0.044045 0.00038249 NaN 2.086 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3264900 + 54345 15472 35975 35996 -0.018569615047454135 YDWVLCKLPRT 11 Unmodified _YDWVLCKLPRT_ 0 0 0 REV__ENST00000532500.1_1_16:89651241-89653999:+|nuORF REV__ENST00000532500.1_1_16:89651241-89653999:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2495422363281 3 465.248074 1392.72239 NaN NaN NaN NaN NaN NaN NaN 160.52 1 155.29 154.79 155.79 -5.2299 0 0 0 0.22632 1 31168 31168 0.03141 0.0052036 1 + 54346 18619 35976 35997 53172 53172 0.04173963650919177 YDYFYHQYSDY 11 Unmodified _YDYFYHQYSDY_ 0 0 0 REV__ENSG00000116990|ENST00000372816|MYCL REV__ENSG00000116990|ENST00000372816|MYCL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2606201171875 3 521.873618 1562.59903 NaN NaN NaN NaN NaN NaN NaN 159.94 1 159.94 159.44 160.44 0 0 0 0 0.23698 1 32113 32113 0.094841 0 1 + 54347 15509 35977 35998 53173 53173 -0.15977040986490465 YDYQHYYQHYY 11 Unmodified _YDYQHYYQHYY_ 0 0 0 ENST00000510376.1_1_5:176332285-176333139:-|nuORF ENST00000510376.1_1_5:176332285-176333139:-|nuORF ENST00000510376.1_1_5:176332285-176333139:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7836303710938 3 548.224762 1641.65246 0.36317 0.0001991 -0.73162 -0.00040109 -0.36845 -0.000202 548.2244208738896 160.15 0.21536 155.35 155.26 155.48 -4.7952 6 5 2 0 0 0 0.89134 1 31846 31846 0.094841 0.094841 1 1449100 54348 10740 35978 35999 53174 53174 -0.14270243483997547 YDYYETDEF 9 Unmodified _YDYYETDEF_ 0 0 0 ENSG00000175899|ENST00000318602|A2M;ENST00000495709.1_1_12:9220421-9221456:-|nuORF;ENST00000495442.1_1_12:9220650-9221456:-|nuORF;CON__ENSEMBL:ENSBTAP00000024146 ENSG00000175899|ENST00000318602|A2M ENSG00000175899|ENST00000318602|A2M MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7686157226562 2 622.735134 1243.45571 NaN NaN NaN NaN NaN NaN NaN 149.81 1 144.68 144.18 145.18 -5.1204 0 0 0 0.19622 1 29028 29028 0.96228 0.26461 1 54349 6440 35979 36000 53175 53175 -0.15627468097636665 YDYYYNTDS 9 Unmodified _YDYYYNTDS_ 0 0 0 nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;IQGAP2|p.Q1499Rfs*15|1|0.05|ENSG00000145703|chr5:76701201-76701202|-/CCGAG|frameshift_variant;ENSG00000145703|ENST00000274364|IQGAP2;IQGAP2|p.T881Hfs*2|2|0.3|ENSG00000145703|chr5:76665133-76665133|A/-|frameshift_variant nc|ENSG00000145703|Q13576-3|IQGAP2 nc|ENSG00000145703|Q13576-3|IQGAP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2783813476562 2 602.227476 1202.4404 NaN NaN NaN NaN NaN NaN NaN 105.46 1 101.09 100.59 101.59 -4.3764 0 0 0 0.23508 1 20217 20217 4.3292 1.594 1 54350 4614 35980 36001 53176 53176 -0.15272334894802952 YEAAIPPAP 9 Unmodified _YEAAIPPAP_ 0 0 0 nc|ENSG00000142513|Q9BZG2-2|ACP4;ENSG00000142513|ENST00000270593|ACP4 nc|ENSG00000142513|Q9BZG2-2|ACP4 nc|ENSG00000142513|Q9BZG2-2|ACP4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 97.827 1 93.907 93.407 94.407 -3.9194 0 0 0 0.19636 1 18778 18778 2.4985 0 1 54351 4421 35981 36002 53177 53177 0.00354693631857117 YEADSESNPE 10 Unmodified _YEADSESNPE_ 0 0 0 ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF;LYST|p.F2078Lfs*38|1|0.35|ENSG00000143669|chr1:235762739-235762739|A/-|frameshift_variant ENSG00000143669|ENST00000389793|LYST ENSG00000143669|ENST00000389793|LYST MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2109069824219 3 380.815769 1139.42548 NaN NaN NaN NaN NaN NaN NaN 49.311 1 46.312 45.812 46.812 -2.999 0 0 0 2.8426 1 9014 9014 3.8763 1.3778 1 54352 4511 35982 36003 53178 53178 -0.1386582676279886 YEAGHLSFYSA 11 Unmodified _YEAGHLSFYSA_ 0 0 0 nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7823486328125 2 622.782753 1243.55095 0.7428 0.00046261 -0.51482 -0.00032062 0.22798 0.00014198 622.7824058359555 103.76 0.76551 103.76 103.41 104.17 0 52 21 4 0 0 0 0.042964 2 20426 20362;20426 118.07 76.229 1 12896000 54353 5010 35983 36004 53179;53180 53180 -0.06108070115874398 YEAGHLSFYSA 11 Unmodified _YEAGHLSFYSA_ 0 0 0 nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7599487304688 2 622.782753 1243.55095 0.4533 0.00028231 -0.28339 -0.00017649 0.16991 0.00010582 622.7825877908916 108.36 0.62537 104.04 103.69 104.32 -4.32 53 17 4 0 0 0 0.078954 2 21359 21300;21359 118.07 72.329 1 10569000 54354 5010 35983 36004 53181;53182 53182 -0.06108070115874398 YEAGHLSFYSA 11 Unmodified _YEAGHLSFYSA_ 0 0 0 nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7604370117188 2 622.782753 1243.55095 0.12636 7.8695E-05 0.2818 0.0001755 0.40816 0.0002542 622.7827859324459 108.45 0.68658 104.04 103.65 104.33 -4.4121 56 19 4 0 0 0 0.011972 2 20846 20735;20846 92.653 45.059 1 10035000 54355 5010 35983 36004 53183;53184 53184 -0.06108070115874398 YEAGHLSFYSA 11 Unmodified _YEAGHLSFYSA_ 0 0 0 nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7820434570312 2 622.782753 1243.55095 0.88534 0.00055137 -0.61276 -0.00038162 0.27258 0.00016976 622.7823549360724 108.09 0.84336 103.95 103.56 104.4 -4.135 63 23 4 0 0 0 0.4577 1 20736 20736 40.239 6.7943 1 9697500 54356 5010 35983 36004 53185 53185 -0.06108070115874398 YEAPAYHL 8 Unmodified _YEAPAYHL_ 0 0 0 SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant;ENSG00000090054|ENST00000262554|SPTLC1;ENST00000461132.1_1_9:94871020-94877616:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1 SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7689208984375 2 482.232168 962.449782 0.11415 5.5045E-05 -0.26193 -0.00012631 -0.14779 -7.1267E-05 482.2319083053183 84.377 0.56254 84.377 84.065 84.627 0 26 15 2 0 0 0 0.3708 1 16448 16448 52.693 18.506 1 2379300 54357 1776 35984 36005 53186 53186 -0.03294477027964149 YEAPAYHL 8 Unmodified _YEAPAYHL_ 0 0 0 SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant;ENSG00000090054|ENST00000262554|SPTLC1;ENST00000461132.1_1_9:94871020-94877616:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1 SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7689514160156 2 482.232168 962.449782 -0.031663 -1.5269E-05 0.68144 0.00032861 0.64978 0.00031334 482.2320438822939 88.275 0.53894 84.483 84.265 84.804 -3.7926 33 14 3 0 0 0 0.59799 1 17248 17248 36.466 8.2929 1 1717900 54358 1776 35984 36005 53187 53187 -0.03294477027964149 YEAPAYHL 8 Unmodified _YEAPAYHL_ 0 0 0 SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant;ENSG00000090054|ENST00000262554|SPTLC1;ENST00000461132.1_1_9:94871020-94877616:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1 SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.76861572265625 2 482.232168 962.449782 0.41403 0.00019966 0.59414 0.00028651 1.0082 0.00048617 482.231872847275 88.465 0.58239 84.47 84.188 84.77 -3.9953 35 16 3 0 0 0 0.59799 1 16801 16801 36.466 8.2929 1 1781300 54359 1776 35984 36005 53188 53188 -0.03294477027964149 YEAPAYHL 8 Unmodified _YEAPAYHL_ 0 0 0 SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant;ENSG00000090054|ENST00000262554|SPTLC1;ENST00000461132.1_1_9:94871020-94877616:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1 SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.76885986328125 2 482.232168 962.449782 0.088834 4.2839E-05 1.0109 0.00048748 1.0997 0.00053032 482.23213174973824 88.23 0.76026 84.48 84.118 84.879 -3.7501 47 21 3 0 0 0 0.3708 1 16862 16862 52.693 18.506 1 2055900 54360 1776 35984 36005 53189 53189 -0.03294477027964149 YEAVELAKG 9 Unmodified _YEAVELAKG_ 0 0 0 REV__ENST00000488910.1_1_3:112277171-112280432:-|nuORF REV__ENST00000488910.1_1_3:112277171-112280432:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25848388671875 2 490.258382 978.502212 -1.05 -0.00051475 0.43954 0.00021549 -0.61042 -0.00029926 490.25895561305947 20.783 0.7667 19.062 18.695 19.462 -1.7211 63 21 4 0 0 0 0.57596 1 3296 3296 0.40827 0 1 27421000 + 54361 16809 35985 36006 53190 53190 0.012100613149982564 YECCECGKF 9 Unmodified _YECCECGKF_ 0 0 0 ENSG00000180884|ENST00000404801|ZNF792 ENSG00000180884|ENST00000404801|ZNF792 ENSG00000180884|ENST00000404801|ZNF792 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2655029296875 2 541.193013 1080.37147 0.14579 7.89E-05 -0.12796 -6.925E-05 0.017831 9.6502E-06 541.1929872786615 90.517 0.79971 86.657 86.262 87.061 -3.8595 29 22 2 0 0 0 0.80521 1 17690 17690 10.824 0 1 1819000 54362 6698 35986 36007 53191 53191 -0.1654973699137372 YECLECRK 8 Unmodified _YECLECRK_ 0 0 0 nc|ENSG00000290988|Q8N8C0-2|ZNF781;nc|ENSG00000290988|Q8N8C0|ZNF781 nc|ENSG00000290988|Q8N8C0-2|ZNF781 nc|ENSG00000290988|Q8N8C0-2|ZNF781 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2772827148438 2 522.23607 1042.45759 -0.3911 -0.00020424 -0.23931 -0.00012498 -0.63041 -0.00032922 522.2359190965226 41.697 0.44805 39.062 38.881 39.329 -2.6348 18 12 2 0 0 0 8448 1 7794 7794 0.25148 0 1 1405100 54363 12662 35987 36008 53192 53192 -0.06194409094337061 YECYECGKCF 10 Unmodified _YECYECGKCF_ 0 0 0 nc|ENSG00000164631|P17014-3|ZNF12;nc|ENSG00000164631|P17014-4|ZNF12;nc|ENSG00000164631|P17014-5|ZNF12;ZNF12|p.F670Ifs*15|1|0.56|ENSG00000164631|chr7:6690934-6690935|-/T|frameshift_variant;ENSG00000164631|ENST00000405858|ZNF12 nc|ENSG00000164631|P17014-3|ZNF12 nc|ENSG00000164631|P17014-3|ZNF12 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7627563476562 2 622.724677 1243.4348 NaN NaN NaN NaN NaN NaN NaN 144.13 1 139.06 138.56 139.56 -5.0671 0 0 0 2.8426 1 27793 27793 0.84494 0.80115 1 54364 5558 35988 36009 53193 53193 -0.17717796274109787 YEDEGFRSRQF 11 Unmodified _YEDEGFRSRQF_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.P125Tfs*3|1|0.2|ENSG00000173692|chr2:231066965-231066966|-/A|frameshift_variant;PSMD1|p.K124Nfs*11|2|0.29|ENSG00000173692|chr2:231066966-231066966|A/-|frameshift_variant;PSMD1|p.N355Tfs*17|1|0.23|ENSG00000173692|chr2:231077150-231077150|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72332763671875 3 478.55299 1432.63714 0.048547 2.3233E-05 -0.10826 -5.1809E-05 -0.059714 -2.8576E-05 478.55289186162906 64.106 0.38043 61.108 60.874 61.255 -2.9975 22 10 3 0 0 0 0.81637 1 12387 12387 26.121 18.176 1 1182400 54365 6305;12839 35989 36010 53194 53194 -0.06187110281189234 YEDEGFRSRQF 11 Unmodified _YEDEGFRSRQF_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.P125Tfs*3|1|0.2|ENSG00000173692|chr2:231066965-231066966|-/A|frameshift_variant;PSMD1|p.K124Nfs*11|2|0.29|ENSG00000173692|chr2:231066966-231066966|A/-|frameshift_variant;PSMD1|p.N355Tfs*17|1|0.23|ENSG00000173692|chr2:231077150-231077150|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72222900390625 3 478.55299 1432.63714 0.19901 9.5235E-05 -0.11228 -5.3732E-05 0.086727 4.1504E-05 478.88706785298695 64.45 0.42287 60.992 60.837 61.26 -3.4581 23 11 3 0 0 0 0.85885 1 12067 12067 21.241 9.61 1 1170200 54366 6305;12839 35989 36010 53195 53195 -0.06187110281189234 YEDEGFRSRQF 11 Unmodified _YEDEGFRSRQF_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.P125Tfs*3|1|0.2|ENSG00000173692|chr2:231066965-231066966|-/A|frameshift_variant;PSMD1|p.K124Nfs*11|2|0.29|ENSG00000173692|chr2:231066966-231066966|A/-|frameshift_variant;PSMD1|p.N355Tfs*17|1|0.23|ENSG00000173692|chr2:231077150-231077150|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72216796875 3 478.55299 1432.63714 0.2832 0.00013553 -0.31799 -0.00015217 -0.034786 -1.6647E-05 478.55275243085697 64.267 0.38815 61.011 60.777 61.165 -3.2567 17 10 2 0 0 0 0.62477 1 12075 12075 16.838 5.207 1 1458500 54367 6305;12839 35989 36010 53196 53196 -0.06187110281189234 YEDEGFRSRQF 11 Unmodified _YEDEGFRSRQF_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1|p.P125Tfs*3|1|0.2|ENSG00000173692|chr2:231066965-231066966|-/A|frameshift_variant;PSMD1|p.K124Nfs*11|2|0.29|ENSG00000173692|chr2:231066966-231066966|A/-|frameshift_variant;PSMD1|p.N355Tfs*17|1|0.23|ENSG00000173692|chr2:231077150-231077150|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 478.55299 1432.63714 -0.38046 -0.00018207 0.31636 0.00015139 -0.064105 -3.0678E-05 478.5531423365664 60.855 0.35142 60.855 60.662 61.013 0 -0.13635 0.00056059 NaN 16.838 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1103400 54368 6305;12839 35989 36010 -0.06187110281189234 YEDFNMEF 8 Unmodified _YEDFNMEF_ 0 0 0 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7691040039062 2 547.710408 1093.40626 0.42197 0.00023111 -1.0685 -0.00058523 -0.64654 -0.00035412 547.7098426142461 89.087 0.69207 85.043 84.654 85.346 -4.0443 48 19 3 0 0 0 0.71876 1 16914 16914 11.64 0.14559 1 7911800 54369 1891 35990 36011 53197 53197 -0.13670454587395398 YEDILQSI 8 Unmodified _YEDILQSI_ 0 0 0 REV__tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1 REV__tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25384521484375 2 490.75039 979.486227 -0.072608 -3.5632E-05 1.8955 0.00093024 1.8229 0.00089461 490.75039931490613 60.772 0.98254 57.549 56.926 57.908 -3.2237 60 27 3 0 0 0 0.78482 1 11266 11266 19.257 0 1 2412400 + 54370 25140 35991 36012 53198 53198 -0.004336449218840244 YEDLYKVH 8 Unmodified _YEDLYKVH_ 0 0 0 REV__DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant REV__DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2708740234375 2 533.763832 1065.51311 0.05419 2.8924E-05 3.9309 0.0020982 3.9851 0.0021271 533.7657674368886 18.579 0.68777 17.268 16.935 17.623 -1.3109 44 19 3 0 0 0 0.99312 1 3051 3051 14.838 6.9281 1 1867800 + 54371 13702 35992 36013 53199 53199 -0.017025363107222802 YEDRVRDL 8 Unmodified _YEDRVRDL_ 0 0 0 REV__ENSG00000141519|ENST00000397545|CCDC40 REV__ENSG00000141519|ENST00000397545|CCDC40 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2706298828125 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 52.206 1 49.118 48.618 49.618 -3.0876 0 0 0 0.23749 1 9599 9599 0.12286 0 1 + 54372 16634 35993 36014 53200 53200 -0.004609195675357114 YEDSQSRTMK 10 Unmodified _YEDSQSRTMK_ 0 0 0 DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant;DYNC2H1|p.L4021Wfs*5|1|0.3|ENSG00000187240|chr11:103358262-103358262|T/-|frameshift_variant;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;DYNC2H1|p.F2761Lfs*20|1|0.09|ENSG00000187240|chr11:103203742-103203742|T/-|frameshift_variant DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7819213867188 2 622.782427 1243.5503 NaN NaN NaN NaN NaN NaN NaN 113.06 1 108.79 108.29 109.29 -4.2725 0 0 0 0.22588 1 21773 21773 11.495 3.5846 1 54373 900 35994 36015 53201 53201 -0.061732328272682935 YEDTLREMF 9 Unmodified _YEDTLREMF_ 0 0 0 ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;ENST00000602204.1_1_19:16980786-16982347:+|nuORF;ENST00000595900.1_1_19:16980720-16983386:+|nuORF ENSG00000127511|ENST00000248054|SIN3B ENSG00000127511|ENST00000248054|SIN3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.279541015625 2 602.271164 1202.52777 NaN NaN NaN NaN NaN NaN NaN 135.55 1 130.91 130.41 131.41 -4.6399 0 0 0 0.069722 1 26736 26736 43.982 21.246 1 54374 3478 35995 36016 53202 53202 -0.06538832224896396 YEDTLREMF 9 Unmodified _YEDTLREMF_ 0 0 0 ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;ENST00000602204.1_1_19:16980786-16982347:+|nuORF;ENST00000595900.1_1_19:16980720-16983386:+|nuORF ENSG00000127511|ENST00000248054|SIN3B ENSG00000127511|ENST00000248054|SIN3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2721557617188 2 602.271164 1202.52777 NaN NaN NaN NaN NaN NaN NaN 135.67 1 131.03 130.53 131.53 -4.6399 0 0 0 0.10686 1 26762 26762 37.075 14.338 1 54375 3478 35995 36016 53203 53203 -0.06538832224896396 YEDTLREMF 9 Unmodified _YEDTLREMF_ 0 0 0 ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;ENST00000602204.1_1_19:16980786-16982347:+|nuORF;ENST00000595900.1_1_19:16980720-16983386:+|nuORF ENSG00000127511|ENST00000248054|SIN3B ENSG00000127511|ENST00000248054|SIN3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2943725585938 2 602.271164 1202.52777 NaN NaN NaN NaN NaN NaN NaN 135.75 1 131.11 130.61 131.61 -4.6399 0 0 0 0.089844 1 26778 26778 40.239 18.702 1 54376 3478 35995 36016 53204 53204 -0.06538832224896396 YEDTLREMF 9 Unmodified _YEDTLREMF_ 0 0 0 ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;ENST00000602204.1_1_19:16980786-16982347:+|nuORF;ENST00000595900.1_1_19:16980720-16983386:+|nuORF ENSG00000127511|ENST00000248054|SIN3B ENSG00000127511|ENST00000248054|SIN3B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2719116210938 2 602.271164 1202.52777 NaN NaN NaN NaN NaN NaN NaN 135.89 1 131.25 130.75 131.75 -4.6399 0 0 0 0.22519 1 26808 26808 16.149 0 1 54377 3478 35995 36016 53205 53205 -0.06538832224896396 YEDTLREMF 9 Unmodified _YEDTLREMF_ 0 0 0 ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;ENST00000602204.1_1_19:16980786-16982347:+|nuORF;ENST00000595900.1_1_19:16980720-16983386:+|nuORF ENSG00000127511|ENST00000248054|SIN3B ENSG00000127511|ENST00000248054|SIN3B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2720947265625 2 602.271164 1202.52777 NaN NaN NaN NaN NaN NaN NaN 135.82 1 130.93 130.43 131.43 -4.8951 0 0 0 0.069722 1 26093 26093 43.982 22.445 1 54378 3478 35995 36016 53206 53206 -0.06538832224896396 YEDTLREMF 9 Unmodified _YEDTLREMF_ 0 0 0 ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;ENST00000602204.1_1_19:16980786-16982347:+|nuORF;ENST00000595900.1_1_19:16980720-16983386:+|nuORF ENSG00000127511|ENST00000248054|SIN3B ENSG00000127511|ENST00000248054|SIN3B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2931518554688 2 602.271164 1202.52777 NaN NaN NaN NaN NaN NaN NaN 136.05 1 131.16 130.66 131.66 -4.8951 0 0 0 0.19657 1 26143 26143 7.4771 7.4333 1 54379 3478 35995 36016 53207 53207 -0.06538832224896396 YEDTLREMF 9 Unmodified _YEDTLREMF_ 0 0 0 ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;ENST00000602204.1_1_19:16980786-16982347:+|nuORF;ENST00000595900.1_1_19:16980720-16983386:+|nuORF ENSG00000127511|ENST00000248054|SIN3B ENSG00000127511|ENST00000248054|SIN3B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2724609375 2 602.271164 1202.52777 NaN NaN NaN NaN NaN NaN NaN 135.64 1 130.81 130.31 131.31 -4.8307 0 0 0 0.22823 1 26115 26115 15.248 3.7538 1 54380 3478 35995 36016 53208 53208 -0.06538832224896396 YEDWRPEQYRK 11 Unmodified _YEDWRPEQYRK_ 0 0 0 REV__CCSAP|p.E21D|1|0.55|ENSG00000154429|chr1:229342403-229342403|C/A|missense_variant REV__CCSAP|p.E21D|1|0.55|ENSG00000154429|chr1:229342403-229342403|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3760375976562 2 785.375872 1568.73719 NaN NaN NaN NaN NaN NaN NaN 22.481 1 21.007 20.507 21.507 -1.4742 0 0 0 0.23698 1 3842 3842 0.30703 0 1 + 54381 13317 35996 36017 53209 53209 -0.024428729474038846 YEEECTEY 8 Unmodified _YEEECTEY_ 0 0 0 REV__ENST00000514905.5_1_5:76414328-76430243:+|nuORF REV__ENST00000514905.5_1_5:76414328-76430243:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2665405273438 2 533.189505 1064.36446 NaN NaN NaN NaN NaN NaN NaN 149.94 1 145.2 144.7 145.7 -4.7323 0 0 0 0.23899 1 29777 29777 1.3295 0 1 + 54382 22580 35997 36018 53210 53210 -0.16515055066565765 YEEFKRLYREH 11 Unmodified _YEEFKRLYREH_ 0 0 0 REV__ENST00000442297.1_1_X:138529664-138529832:+|nuORF REV__ENST00000442297.1_1_X:138529664-138529832:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3953247070312 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 146.27 1 146.27 145.77 146.77 0 0 0 0 0.22632 1 29246 29246 0 0 1 + 54383 21717 35998 36019 53211 53211 0.011940039493083532 YEEFKRLYREH 11 Unmodified _YEEFKRLYREH_ 0 0 0 REV__ENST00000442297.1_1_X:138529664-138529832:+|nuORF REV__ENST00000442297.1_1_X:138529664-138529832:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3912353515625 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 149.29 1 149.29 148.79 149.79 0 0 0 0 0.22632 1 29886 29886 0.094841 0 1 + 54384 21717 35998 36019 53212 53212 0.011940039493083532 YEEFKRLYREH 11 Unmodified _YEEFKRLYREH_ 0 0 0 REV__ENST00000442297.1_1_X:138529664-138529832:+|nuORF REV__ENST00000442297.1_1_X:138529664-138529832:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3953857421875 2 785.394064 1568.77358 NaN NaN NaN NaN NaN NaN NaN 163.64 1 158.6 158.1 159.1 -5.0446 0 0 0 0.22632 1 31859 31859 0 0 1 + 54385 21717 35998 36019 53213 53213 0.011940039493083532 YEEHLEKHRKD 11 Unmodified _YEEHLEKHRKD_ 0 0 0 ENST00000488606.5_1_1:36921391-36923601:-|nuORF;ENSG00000116898|ENST00000373116|MRPS15 ENST00000488606.5_1_1:36921391-36923601:-|nuORF ENST00000488606.5_1_1:36921391-36923601:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.36767578125 2 742.368047 1482.72154 NaN NaN NaN NaN NaN NaN NaN 139.78 1 139.78 139.28 140.28 0 0 0 0 0.2367 1 27798 27798 2.9952 0 1 54386 2961 35999 36020 53214 53214 -0.000511594644649449 YEEKNGSQS 9 Unmodified _YEEKNGSQS_ 0 0 0 ENST00000427259.1_1_9:98632604-98637316:-|nuORF ENST00000427259.1_1_9:98632604-98637316:-|nuORF ENST00000427259.1_1_9:98632604-98637316:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2821655273438 2 521.22781 1040.44107 0.77419 0.00040353 -0.71476 -0.00037255 0.059435 3.0979E-05 521.2273430981564 106.35 0.82689 102.26 101.85 102.68 -4.0913 47 23 3 0 0 0 0.68435 1 20463 20463 7.2892 0 1 4807900 54387 9740 36000 36021 53215 53215 -0.07753495455085613 YEELVNPEPN 10 Unmodified _YEELVNPEPN_ 0 0 0 nc|ENSG00000273777|Q6UY09-4|CEACAM20;nc|ENSG00000273777|Q6UY09-3|CEACAM20;nc|ENSG00000273777|Q6UY09-2|CEACAM20;ENSG00000273777|ENST00000614924|CEACAM20 nc|ENSG00000273777|Q6UY09-4|CEACAM20 nc|ENSG00000273777|Q6UY09-4|CEACAM20 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2800903320312 2 602.280043 1202.54553 0.42266 0.00025456 0.23519 0.00014165 0.65785 0.00039621 602.7821548637744 57.552 0.53804 54.301 54.078 54.616 -3.2517 21 14 2 0 0 0 0.71097 1 10713 10713 10.074 0 1 1298500 54388 8013 36001 36022 53216 53216 -0.04763793698361951 YEEMLKEGY 9 Oxidation (M) _YEEM(Oxidation (M))LKEGY_ YEEM(1)LKEGY YEEM(110)LKEGY 0 0 1 ENST00000512567.5_1_4:76407750-76419412:-|nuORF;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-6|RCHY1;ENSG00000163743|ENST00000324439|RCHY1 ENST00000512567.5_1_4:76407750-76419412:-|nuORF ENST00000512567.5_1_4:76407750-76419412:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2608642578125 2 589.257722 1176.50089 0.63849 0.00037623 -0.10835 -6.3846E-05 0.53014 0.00031239 589.2577060612573 48.548 0.9158 48.548 48.068 48.984 0 82 25 4 0 0 0 9.6679E-06 4 9148 9099;9148;9150;9197 105.38 85.264 1 25813000 54389 5459 36002 36023 53217;53218;53219;53220 53218 84 -0.0802994083608155 YEEMLKEGY 9 Oxidation (M) _YEEM(Oxidation (M))LKEGY_ YEEM(1)LKEGY YEEM(110)LKEGY 0 0 1 ENST00000512567.5_1_4:76407750-76419412:-|nuORF;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-6|RCHY1;ENSG00000163743|ENST00000324439|RCHY1 ENST00000512567.5_1_4:76407750-76419412:-|nuORF ENST00000512567.5_1_4:76407750-76419412:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2603759765625 2 589.257722 1176.50089 0.25158 0.00014825 -0.15212 -8.9637E-05 0.099465 5.861E-05 589.2576503665367 51.777 0.92071 48.895 48.493 49.414 -2.8824 80 26 4 0 0 0 9.6679E-06 4 9840 9794;9840;9843;9892 113.93 111.3 1 29415000 54390 5459 36002 36023 53221;53222;53223;53224 53222 84 -0.0802994083608155 YEEMLKEGY 9 Oxidation (M) _YEEM(Oxidation (M))LKEGY_ YEEM(1)LKEGY YEEM(120)LKEGY 0 0 1 ENST00000512567.5_1_4:76407750-76419412:-|nuORF;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-6|RCHY1;ENSG00000163743|ENST00000324439|RCHY1 ENST00000512567.5_1_4:76407750-76419412:-|nuORF ENST00000512567.5_1_4:76407750-76419412:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2604370117188 2 589.257722 1176.50089 0.44658 0.00026315 -0.24554 -0.00014469 0.20104 0.00011846 589.2576045419902 52.003 0.90788 48.937 48.519 49.427 -3.0656 78 25 4 0 0 0 9.6679E-06 2 9543 9543;9547 122.78 120.15 1 17975000 54391 5459 36002 36023 53225;53226 53225 84 -0.0802994083608155 YEEMLKEGY 9 Oxidation (M) _YEEM(Oxidation (M))LKEGY_ YEEM(1)LKEGY YEEM(68)LKEGY 0 0 1 ENST00000512567.5_1_4:76407750-76419412:-|nuORF;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-6|RCHY1;ENSG00000163743|ENST00000324439|RCHY1 ENST00000512567.5_1_4:76407750-76419412:-|nuORF ENST00000512567.5_1_4:76407750-76419412:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.260498046875 2 589.257722 1176.50089 -0.048185 -2.8393E-05 0.25881 0.00015251 0.21063 0.00012411 589.2579147514806 51.978 1.0746 48.926 48.453 49.527 -3.0517 94 30 4 0 0 0 0.05838 1 9609 9609 67.838 40.955 1 25232000 54392 5459 36002 36023 53227 53227 84 -0.0802994083608155 YEEPWRKTFWK 11 Unmodified _YEEPWRKTFWK_ 0 0 0 REV__tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1 REV__tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3971557617188 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 138.72 1 133.87 133.37 134.37 -4.8492 0 0 0 0.23698 1 26736 26736 2.2828 0.95324 1 + 54393 24882 36003 36024 53228 53228 0.015960934430040652 YEEQCKQLY 9 Unmodified _YEEQCKQLY_ 0 0 0 ARID3C|p.F104C|1|0.1|ENSG00000205143|chr9:34627704-34627704|A/C|missense_variant ARID3C|p.F104C|1|0.1|ENSG00000205143|chr9:34627704-34627704|A/C|missense_variant ARID3C|p.F104C|1|0.1|ENSG00000205143|chr9:34627704-34627704|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2931518554688 2 602.271164 1202.52777 NaN NaN NaN NaN NaN NaN NaN 136.08 1 131.18 130.68 131.68 -4.8951 0 0 0 0.23508 1 26147 26147 10.074 0 1 54394 220 36004 36025 53229 53229 -0.06538832224873659 YEESDLERGY 10 Unmodified _YEESDLERGY_ 0 0 0 nc|ENSG00000064652|Q9Y343-2|SNX24;ENSG00000064652|ENST00000261369|SNX24 nc|ENSG00000064652|Q9Y343-2|SNX24 nc|ENSG00000064652|Q9Y343-2|SNX24 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.754150390625 2 630.772582 1259.53061 NaN NaN NaN NaN NaN NaN NaN 106.78 1 102.69 102.19 103.19 -4.0913 0 0 0 0.22588 1 20532 20532 7.2892 0 1 54395 1339 36005 36026 53230 53230 -0.08877285566359205 YEESEGHNT 9 Unmodified _YEESEGHNT_ 0 0 0 nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;ENSG00000133131|ENST00000355610|MORC4 nc|ENSG00000133131|Q8TE76-2|MORC4 nc|ENSG00000133131|Q8TE76-2|MORC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2837524414062 2 533.209618 1064.40468 0.10156 5.4153E-05 0.45491 0.00024256 0.55647 0.00029671 533.209521121688 111.59 0.93916 111.59 111.17 112.11 0 103 26 5 0 0 0 0.85111 1 21972 21972 10.824 10.824 1 24866000 54396 3787 36006 36027 53231 53231 -0.12494372351784477 YEEVKKELN 9 Unmodified _YEEVKKELN_ 0 0 0 nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-5|CUX1;CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant;CUX1|p.A591Qfs*9|1|0.06|ENSG00000257923|chr7:102197181-102197182|-/CAGT|frameshift_variant;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF nc|ENSG00000257923|P39880-4|CUX1 nc|ENSG00000257923|P39880-4|CUX1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.33447265625 2 576.300778 1150.587 NaN NaN NaN NaN NaN NaN NaN 93.2 1 93.2 92.7 93.7 0 0 0 0 0.21844 1 18232 18232 18.146 1.9972 1 54397 7948 36007 36028 53232 53232 0.017733870609617952 YEFALELRV 9 Unmodified _YEFALELRV_ 0 0 0 REV__ENST00000440760.5_1_2:27594325-27599583:+|nuORF REV__ENST00000440760.5_1_2:27594325-27599583:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2101135253906 3 380.541363 1138.60226 -0.26328 -0.00010019 0.23865 9.0818E-05 -0.024626 -9.3711E-06 380.54142025361034 85.032 0.97329 81.368 80.883 81.856 -3.6641 86 27 4 0 0 0 0.72996 1 16551 16551 4.897 0.70751 1 37854000 + 54398 15413 36008 36029 53233 53233 0.03850298648762873 YEFALELRV 9 Unmodified _YEFALELRV_ 0 0 0 REV__ENST00000440760.5_1_2:27594325-27599583:+|nuORF REV__ENST00000440760.5_1_2:27594325-27599583:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 380.541363 1138.60226 0.16961 6.4544E-05 -0.20205 -7.6888E-05 -0.03244 -1.2345E-05 380.54124728716636 81.527 0.87116 81.527 81.092 81.963 0 0.14664 -0.0003626 NaN 4.897 85 24 5 NaN NaN NaN NaN 0 NaN NaN 0 48636000 + 54399 15413 36008 36029 0.03850298648762873 YEFALELRV 9 Unmodified _YEFALELRV_ 0 0 0 REV__ENST00000440760.5_1_2:27594325-27599583:+|nuORF REV__ENST00000440760.5_1_2:27594325-27599583:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.541363 1138.60226 -0.26328 -0.00010019 0.23865 9.0818E-05 -0.024626 -9.3711E-06 380.54142025361034 85.032 0.97329 81.368 80.883 81.856 -3.6641 -0.011954 0.00014051 NaN 4.897 86 27 4 NaN NaN NaN NaN 0 NaN NaN 0 37854000 + 54400 15413 36008 36029 0.03850298648762873 YEFALELRV 9 Unmodified _YEFALELRV_ 0 0 0 REV__ENST00000440760.5_1_2:27594325-27599583:+|nuORF REV__ENST00000440760.5_1_2:27594325-27599583:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.541363 1138.60226 0.20576 7.8302E-05 -0.19913 -7.5776E-05 0.0066366 2.5255E-06 380.5412366929091 85.196 0.90259 81.286 80.909 81.812 -3.9093 -0.093506 -0.00035927 NaN 4.897 86 25 4 NaN NaN NaN NaN 0 NaN NaN 0 36337000 + 54401 15413 36008 36029 0.03850298648762873 YEFALELRV 9 Unmodified _YEFALELRV_ 0 0 0 REV__ENST00000440760.5_1_2:27594325-27599583:+|nuORF REV__ENST00000440760.5_1_2:27594325-27599583:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 380.541363 1138.60226 -0.66499 -0.00025306 0.65741 0.00025017 -0.0075745 -2.8824E-06 380.5415398036945 85.05 0.96693 81.339 80.837 81.804 -3.7117 -0.041181 0.00061858 NaN 4.897 92 27 5 NaN NaN NaN NaN 0 NaN NaN 0 34191000 + 54402 15413 36008 36029 0.03850298648762873 YEFKGHSL 8 Unmodified _YEFKGHSL_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2;TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant;TNKS2|p.Q337H|1|0.12|ENSG00000107854|chr10:91828313-91828313|A/C|missense_variant;TNKS2|p.K349Nfs*8|1|0.47|ENSG00000107854|chr10:91828344-91828344|A/-|frameshift_variant;TNKS|p.N555Kfs*2|1|0.29|ENSG00000173273|chr8:9710033-9710034|-/A|frameshift_variant;nc|ENSG00000173273|O95271-2|TNKS ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.263916015625 2 490.745442 979.476331 -0.013379 -6.5656E-06 0.28415 0.00013944 0.27077 0.00013288 490.7455816334031 56.857 0.31149 56.857 56.71 57.022 0 13 8 2 0 0 0 0.64118 1 10866 10866 30.637 8.8899 1 1697300 54403 6284 36009 36030 53234 53234 -0.014227881366082329 YEFKGHSL 8 Unmodified _YEFKGHSL_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2;TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant;TNKS2|p.Q337H|1|0.12|ENSG00000107854|chr10:91828313-91828313|A/C|missense_variant;TNKS2|p.K349Nfs*8|1|0.47|ENSG00000107854|chr10:91828344-91828344|A/-|frameshift_variant;TNKS|p.N555Kfs*2|1|0.29|ENSG00000173273|chr8:9710033-9710034|-/A|frameshift_variant;nc|ENSG00000173273|O95271-2|TNKS ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25384521484375 2 490.745442 979.476331 -0.093729 -4.5997E-05 0.58048 0.00028487 0.48675 0.00023887 490.7458109137415 60.107 0.42437 56.883 56.674 57.098 -3.2237 17 11 2 0 0 0 0.55701 1 11266 11266 27.629 8.3718 1 838130 54404 6284 36009 36030 53235 53235 -0.014227881366082329 YEFTQAVHS 9 Unmodified _YEFTQAVHS_ 0 0 0 REV__ZFP30|p.T131Pfs*161|1|0.12|ENSG00000120784|chr19:37636150-37636150|T/-|frameshift_variant REV__ZFP30|p.T131Pfs*161|1|0.12|ENSG00000120784|chr19:37636150-37636150|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.270751953125 2 541.251089 1080.48762 NaN NaN NaN NaN NaN NaN NaN 99.863 1 95.731 95.231 96.231 -4.1326 0 0 0 0.23277 1 19623 19623 13.906 1.6654 1 + 54405 25563 36010 36031 53236 53236 -0.04940010833138331 YEFVEMYL 8 Unmodified _YEFVEMYL_ 0 0 0 REV__FBXO11|p.D318Kfs*3|1|0.37|ENSG00000138081|chr2:47833050-47833053|TGTC/-|frameshift_variant REV__FBXO11|p.D318Kfs*3|1|0.37|ENSG00000138081|chr2:47833050-47833053|TGTC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7816162109375 2 547.249169 1092.48378 0.23317 0.0001276 0.61137 0.00033457 0.84454 0.00046218 547.2493504351216 97.161 0.62232 93.064 92.805 93.427 -4.0978 27 17 2 0 0 0 0.69887 1 19114 19114 14.582 0 1 1858800 + 54406 16436 36011 36032 53237 53237 -0.05875816651200694 YEFVEMYL 8 Unmodified _YEFVEMYL_ 0 0 0 REV__FBXO11|p.D318Kfs*3|1|0.37|ENSG00000138081|chr2:47833050-47833053|TGTC/-|frameshift_variant REV__FBXO11|p.D318Kfs*3|1|0.37|ENSG00000138081|chr2:47833050-47833053|TGTC/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.249169 1092.48378 0.174 9.5224E-05 1.0559 0.00057781 1.2299 0.00067304 547.2496597650955 97.2 0.68169 92.965 92.746 93.428 -4.2348 -0.0091485 -1.8129E-05 NaN 14.582 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3055300 + 54407 16436 36011 36032 -0.05875816651200694 YEFWRERFTVH 11 Unmodified _YEFWRERFTVH_ 0 0 0 LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant LARGE|p.R447W|1|0.45|ENSG00000133424|chr22:33316197-33316197|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3834228515625 2 785.3835 1568.75245 NaN NaN NaN NaN NaN NaN NaN 80.494 1 76.655 76.155 77.155 -3.8392 0 0 0 0.22632 1 15279 15279 0 0 1 54408 12070 36012 36033 53238 53238 -0.009179613595733827 YEHEFVEL 8 Unmodified _YEHEFVEL_ 0 0 0 ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B ENSG00000166377|ENST00000426216|ATP9B ENSG00000166377|ENST00000426216|ATP9B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2694091796875 2 533.248015 1064.48148 0.088481 4.7183E-05 0.014496 7.7302E-06 0.10298 5.4913E-05 533.2479981222184 112.09 0.73262 112.09 111.69 112.42 0 46 20 3 0 0 0 0.72565 1 22029 22029 26.884 9.9414 1 4286600 54409 5716 36013 36034 53239 53239 -0.0481852906466429 YEHEFVEL 8 Unmodified _YEHEFVEL_ 0 0 0 ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B ENSG00000166377|ENST00000426216|ATP9B ENSG00000166377|ENST00000426216|ATP9B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2702026367188 2 533.248015 1064.48148 0.67971 0.00036246 -0.56544 -0.00030152 0.11427 6.0934E-05 533.2475829386993 116.52 0.66468 111.94 111.56 112.22 -4.5815 50 18 3 0 0 0 0.30817 1 22325 22325 50.855 12.704 1 3853700 54410 5716 36013 36034 53240 53240 -0.0481852906466429 YEHEFVEL 8 Unmodified _YEHEFVEL_ 0 0 0 ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B ENSG00000166377|ENST00000426216|ATP9B ENSG00000166377|ENST00000426216|ATP9B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2799682617188 2 533.248015 1064.48148 0.54445 0.00029033 -0.42006 -0.000224 0.12439 6.6331E-05 533.2478011442586 116.23 0.74172 111.87 111.46 112.2 -4.3585 43 20 3 0 0 0 0.30817 1 22367 22367 50.855 12.704 1 3766100 54411 5716 36013 36034 53241 53241 -0.0481852906466429 YEIGEELNQ 9 Unmodified _YEIGEELNQ_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.779296875 2 547.753661 1093.49277 NaN NaN NaN NaN NaN NaN NaN 146.04 1 140.93 140.43 141.43 -5.1108 0 0 0 0.21844 1 28237 28237 18.146 1.2041 1 + 54412 17221 36014 36035 53242 53242 -0.05023751761200401 YEIIKNSVE 9 Unmodified _YEIIKNSVE_ 0 0 0 tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1 tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1 tr|U7SJP3|U7SJP3_FUSNUHelix-turn-helixtype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02041PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.79052734375 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 92.267 1 88.173 87.673 88.673 -4.0946 0 0 0 0.14843 1 17577 17577 30.637 6.616 1 54413 25949 36015 36036 53243 53243 0.022500020322468117 YEINAHKY 8 Unmodified _YEINAHKY_ 0 0 0 nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A nc|ENSG00000165055|Q6P1Q9-2|METTL2B nc|ENSG00000165055|Q6P1Q9-2|METTL2B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 346.2781982421875 3 346.506541 1036.49779 -0.48616 -0.00016846 0.48211 0.00016705 -0.0040576 -1.406E-06 346.5066719128687 38.081 0.76306 35.743 35.362 36.125 -2.3375 53 21 3 0 0 0 1.0265 1 6700 6700 1.6526 0.17072 1 16574000 54414 1722 36016 36037 53244 53244 -0.01899403107904618 YEINAHKY 8 Unmodified _YEINAHKY_ 0 0 0 nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A nc|ENSG00000165055|Q6P1Q9-2|METTL2B nc|ENSG00000165055|Q6P1Q9-2|METTL2B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 346.506541 1036.49779 -0.61697 -0.00021378 0.85446 0.00029608 0.23749 8.2292E-05 346.50679470556804 38.253 0.69221 35.785 35.438 36.13 -2.4688 0.020563 0.00018074 NaN 1.6526 49 19 4 NaN NaN NaN NaN 0 NaN NaN 0 22983000 54415 1722 36016 36037 -0.01899403107904618 YEITDKKIL 9 Unmodified _YEITDKKIL_ 0 0 0 tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1 tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1 tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2197265625 3 374.885018 1121.63323 -0.21887 -8.205E-05 0.14068 5.2737E-05 -0.078192 -2.9313E-05 374.8849855643483 101.88 0.68799 97.69 97.304 97.992 -4.1861 33 19 2 0 0 0 0.77797 1 19966 19966 2.7352 0 1 2127200 54416 26048 36017 36038 53245 53245 0.07727451963069143 YEKDDKLTP 9 Unmodified _YEKDDKLTP_ 0 0 0 ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 371.5361633300781 3 370.188878 1107.5448 0.43778 0.00016206 -0.62032 -0.00022963 -0.18253 -6.7572E-05 370.1886493832565 29.134 1.8096 27.178 26.26 28.069 -1.9561 187 51 5 0 0 0 0.5428 1 5293 5293 7.0341 3.1578 1 73690000 54417 1839 36018 36039 53246 53246 -0.004665883474444854 YEKGDEES 8 Unmodified _YEKGDEES_ 0 0 0 REV__ENST00000491955.5_1_X:154007454-154010087:-|nuORF REV__ENST00000491955.5_1_X:154007454-154010087:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72711181640625 2 478.695812 955.377071 NaN NaN NaN NaN NaN NaN NaN 143.51 1 138.49 137.99 138.99 -5.0261 0 0 0 0.23487 1 27667 27667 0.063987 0 1 + 54418 16036 36019 36040 53247 53247 -0.10240275612034111 YEKGVYGI 8 Unmodified _YEKGVYGI_ 0 0 0 tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1 tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1 tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 104.52 1 100.47 99.969 100.97 -4.0543 0 0 0 0.23312 1 20099 20099 6.2058 0 1 54419 26319 36020 36041 53248 53248 0.003546936318457483 YEKLASAF 8 Unmodified _YEKLASAF_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16510009765625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 104.33 1 100.27 99.772 100.77 -4.0543 0 0 0 0.23312 1 20062 20062 6.2058 0 1 54420 5857 36021 36042 53249 53249 0.00354693631857117 YEKLGWVIA 9 Unmodified _YEKLGWVIA_ 0 0 0 MFSD8|p.F75_L76insYEK|1|0.06|ENSG00000164073|chr4:127943964-127943965|-/GCTTCTCAT|inframe_insertion MFSD8|p.F75_L76insYEK|1|0.06|ENSG00000164073|chr4:127943964-127943965|-/GCTTCTCAT|inframe_insertion MFSD8|p.F75_L76insYEK|1|0.06|ENSG00000164073|chr4:127943964-127943965|-/GCTTCTCAT|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2015380859375 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 71.348 1 68.099 67.599 68.599 -3.2492 0 0 0 0.23108 1 13890 13890 14.405 4.3315 1 54421 12138 36022 36043 53250 53250 0.050192174827316194 YEKLGWVIA 9 Unmodified _YEKLGWVIA_ 0 0 0 MFSD8|p.F75_L76insYEK|1|0.06|ENSG00000164073|chr4:127943964-127943965|-/GCTTCTCAT|inframe_insertion MFSD8|p.F75_L76insYEK|1|0.06|ENSG00000164073|chr4:127943964-127943965|-/GCTTCTCAT|inframe_insertion MFSD8|p.F75_L76insYEK|1|0.06|ENSG00000164073|chr4:127943964-127943965|-/GCTTCTCAT|inframe_insertion MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2018737792969 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 71.564 1 68.314 67.814 68.814 -3.2492 0 0 0 0.23508 1 13935 13935 6.6304 0.42459 1 54422 12138 36022 36043 53251 53251 0.050192174827316194 YEKNMHEQT 9 Unmodified _YEKNMHEQT_ 0 0 0 ENST00000578527.1_1_17:65549676-65688690:+|nuORF;nc|ENSG00000154217|Q9UKF7-2|PITPNC1;PRKAR1A-PITPNC1|1|fusion ENST00000578527.1_1_17:65549676-65688690:+|nuORF ENST00000578527.1_1_17:65549676-65688690:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2587890625 2 590.258588 1178.50262 NaN NaN NaN NaN NaN NaN NaN 58.126 1 55.216 54.716 55.716 -2.9105 0 0 0 0.23508 1 11160 11160 6.2058 0 1 54423 11474 36023 36044 53252 53252 -0.0794888702746448 YEKWKEFIAL 10 Unmodified _YEKWKEFIAL_ 0 0 0 REV__EPB41L5|p.W268Gfs*4|1|0.41|ENSG00000115109|chr2:120078574-120078574|T/-|frameshift_variant REV__EPB41L5|p.W268Gfs*4|1|0.41|ENSG00000115109|chr2:120078574-120078574|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 442.9073181152344 3 442.907934 1325.70197 NaN NaN NaN NaN NaN NaN NaN 11.592 1 10.688 10.188 11.188 -0.90401 0 0 0 0.22588 1 1546 1546 0.15932 0 1 + 54424 15403 36024 36045 53253 53253 0.05215116262752417 YELARSVAW 9 Unmodified _YELARSVAW_ 0 0 0 REV__ENSG00000274286|ENST00000620793|ADRA2B REV__ENSG00000274286|ENST00000620793|ADRA2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7838745117188 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 59.948 1 59.948 59.448 60.448 0 0 0 0 0.18272 1 11491 11491 1.2148 0 1 + 54425 19926 36025 36046 53254 53254 0.012608588175226032 YELARSVAW 9 Unmodified _YELARSVAW_ 0 0 0 REV__ENSG00000274286|ENST00000620793|ADRA2B REV__ENSG00000274286|ENST00000620793|ADRA2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7727661132812 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 60.099 1 60.099 59.599 60.599 0 0 0 0 0.18272 1 11520 11520 2.6312 0 1 + 54426 19926 36025 36046 53255 53255 0.012608588175226032 YELARSVAW 9 Unmodified _YELARSVAW_ 0 0 0 REV__ENSG00000274286|ENST00000620793|ADRA2B REV__ENSG00000274286|ENST00000620793|ADRA2B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7841796875 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 63.11 1 60.112 59.612 60.612 -2.9975 0 0 0 0.18272 1 12186 12186 1.2148 0 1 + 54427 19926 36025 36046 53256 53256 0.012608588175226032 YELLEQSTG 9 Unmodified _YELLEQSTG_ 0 0 0 REV__ENSG00000260903|ENST00000562532|XKR7 REV__ENSG00000260903|ENST00000562532|XKR7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2575073242188 2 520.250754 1038.48696 -0.68327 -0.00035547 0.59533 0.00030972 -0.087934 -4.5747E-05 520.2510730353265 106.71 0.96866 102.29 101.75 102.72 -4.4121 87 27 5 0 0 0 0.60061 1 20474 20474 13.042 0.51092 1 17521000 + 54428 19884 36026 36047 53257 53257 -0.03074850272855656 YELRWREQPHR 11 Unmodified _YELRWREQPHR_ 0 0 0 REV__ENSG00000188070|ENST00000433688|ZFTA REV__ENSG00000188070|ENST00000433688|ZFTA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4019165039062 2 785.405298 1568.79604 NaN NaN NaN NaN NaN NaN NaN 162.23 1 157.44 156.94 157.94 -4.7898 0 0 0 0.23698 1 32276 32276 1.1933 0.84271 1 + 54429 19131 36027 36048 53258 53258 0.034396481376006705 YELWWFWLVWT 11 Unmodified _YELWWFWLVWT_ 0 0 0 nc|ENSG00000166272|Q9NX94|WBP1L;WBP1L|p.N258Afs*68|1|0.38|ENSG00000166272|chr10:102813061-102813062|-/GT|frameshift_variant;ENSG00000166272|ENST00000448841|WBP1L nc|ENSG00000166272|Q9NX94|WBP1L nc|ENSG00000166272|Q9NX94|WBP1L MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 814.898681640625 2 814.900463 1627.78637 NaN NaN NaN NaN NaN NaN NaN 177.96 1 177.96 177.46 178.46 0 0 0 0 0.22632 1 36870 36870 0.094841 0.094841 1 54430 5712 36028 36049 53259 53259 -0.0024093292049656156 YEMEKSLYYYD 11 Unmodified _YEMEKSLYYYD_ 0 0 0 tr|U7SLA2|U7SLA2_FUSNULLPSF_NHT_00031familyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01947PE=3SV=1 tr|U7SLA2|U7SLA2_FUSNULLPSF_NHT_00031familyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01947PE=3SV=1 tr|U7SLA2|U7SLA2_FUSNULLPSF_NHT_00031familyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01947PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 501.8821105957031 3 501.883126 1502.62755 NaN NaN NaN NaN NaN NaN NaN 10.178 1 10.178 9.6779 10.678 0 0 0 0 0.23698 1 1253 1253 0 0 1 54431 25982 36029 36050 53260 53260 -0.10366059401553684 YENEVALR 8 Unmodified _YENEVALR_ 0 0 0 CON__P13645;ENSG00000186395|ENST00000269576|KRT10 CON__P13645 CON__P13645 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 497.23785400390625 2 497.253631 992.49271 -0.097507 -4.8486E-05 2.1464 0.0010673 2.0489 0.0010188 497.2551575658525 46.617 2.1878 43.752 42.162 44.35 -2.8653 133 62 4 0 0 0 8448 1 8588 8588 9.544 3.3521 1 45990000 + 54432 664 36030 36051 53261 53261 -0.0038370697051277602 YENEVALR 8 Unmodified _YENEVALR_ 0 0 0 CON__P13645;ENSG00000186395|ENST00000269576|KRT10 CON__P13645 CON__P13645 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 497.253631 992.49271 0.44569 0.00022162 1.1558 0.00057471 1.6015 0.00079633 497.2546775897193 43.588 1.8043 43.588 42.183 43.987 0 -0.093786 -0.00059963 NaN 9.544 106 51 4 NaN NaN NaN NaN 0 NaN NaN 0 44880000 + 54433 664 36030 36051 -0.0038370697051277602 YENEVALR 8 Unmodified _YENEVALR_ 0 0 0 CON__P13645;ENSG00000186395|ENST00000269576|KRT10 CON__P13645 CON__P13645 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 497.253631 992.49271 0.0024034 1.1951E-06 1.9424 0.00096587 1.9448 0.00096707 497.2550226214496 46.547 1.8205 43.706 42.186 44.006 -2.8409 0.024096 0.00018269 NaN 9.544 109 51 4 NaN NaN NaN NaN 0 NaN NaN 0 42760000 + 54434 664 36030 36051 -0.0038370697051277602 YENIIVHTY 9 Unmodified _YENIIVHTY_ 0 0 0 nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000461039.1_1_1:64021028-64034235:+|nuORF nc|ENSG00000203965|A8K855-2|EFCAB7 nc|ENSG00000203965|A8K855-2|EFCAB7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3135986328125 2 576.290214 1150.56587 0.14524 8.3703E-05 0.12705 7.3219E-05 0.2723 0.00015692 576.2904366065931 95.443 0.72455 95.443 95.076 95.801 0 46 20 3 0 0 0 0.30909 1 18731 18731 49.554 7.7147 1 8307600 54435 7551 36031 36052 53262 53262 -0.0033857824789720325 YENIIVHTY 9 Unmodified _YENIIVHTY_ 0 0 0 nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000461039.1_1_1:64021028-64034235:+|nuORF nc|ENSG00000203965|A8K855-2|EFCAB7 nc|ENSG00000203965|A8K855-2|EFCAB7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3114013671875 2 576.290214 1150.56587 0.042413 2.4442E-05 -0.096418 -5.5565E-05 -0.054005 -3.1123E-05 576.2902735069381 99.669 0.70062 95.537 95.128 95.829 -4.1326 44 19 3 0 0 0 0.09885 1 19519 19519 56.177 23.872 1 6476000 54436 7551 36031 36052 53263 53263 -0.0033857824789720325 YENIIVHTY 9 Unmodified _YENIIVHTY_ 0 0 0 nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000461039.1_1_1:64021028-64034235:+|nuORF nc|ENSG00000203965|A8K855-2|EFCAB7 nc|ENSG00000203965|A8K855-2|EFCAB7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.312744140625 2 576.290214 1150.56587 0.35803 0.00020633 -0.34413 -0.00019832 0.013898 8.0091E-06 576.2900858960252 99.738 0.60875 95.441 95.173 95.782 -4.297 43 17 3 0 0 0 0.029993 1 19090 19090 118.07 55.496 1 8313900 54437 7551 36031 36052 53264 53264 -0.0033857824789720325 YENIIVHTY 9 Unmodified _YENIIVHTY_ 0 0 0 nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000461039.1_1_1:64021028-64034235:+|nuORF nc|ENSG00000203965|A8K855-2|EFCAB7 nc|ENSG00000203965|A8K855-2|EFCAB7 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3231811523438 2 576.290214 1150.56587 0.22826 0.00013154 -0.17719 -0.00010211 0.051067 2.9429E-05 576.2900954884767 99.419 0.65952 95.463 95.172 95.832 -3.9564 46 18 3 0 0 0 0.0022896 1 19058 19058 118.07 59.39 1 8480500 54438 7551 36031 36052 53265 53265 -0.0033857824789720325 YENMDGGDCFD 11 Unmodified _YENMDGGDCFD_ 0 0 0 REV__ENSG00000175087|ENST00000374269|PDIK1L REV__ENSG00000175087|ENST00000374269|PDIK1L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 633.0380859375 2 633.207903 1264.40125 NaN NaN NaN NaN NaN NaN NaN 169.11 1 164.32 163.82 164.82 -4.7898 0 0 0 0.22632 1 34230 34230 0.0059557 0.0045745 1 + 54439 18453 36032 36053 53266 53266 -0.22037126512327632 YENNFLDY 8 Unmodified _YENNFLDY_ 0 0 0 ARHGEF33|p.D350Y|1|0.14|ENSG00000214694|chr2:38951116-38951116|G/T|missense_variant ARHGEF33|p.D350Y|1|0.14|ENSG00000214694|chr2:38951116-38951116|G/T|missense_variant ARHGEF33|p.D350Y|1|0.14|ENSG00000214694|chr2:38951116-38951116|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017822265625 3 359.822307 1076.44509 NaN NaN NaN NaN NaN NaN NaN 71.998 1 68.371 67.871 68.871 -3.6275 0 0 0 0.21486 1 13588 13588 3.9444 0 1 54440 213 36033 36054 53267 53267 -0.09007405961369841 YENTFQEL 8 Unmodified _YENTFQEL_ 0 0 0 nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;nc|ENSG00000138434|P28290-2|ITPRID2;ENST00000491720.5_1_2:182783318-182792989:+|nuORF;ENST00000440623.5_1_2:182781645-182792989:+|nuORF nc|ENSG00000138434|P28290-3|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2662963867188 2 522.237647 1042.46074 -0.78512 -0.00041002 1.074 0.0005609 0.28891 0.00015088 522.2380646118992 111.63 0.45044 107.13 106.89 107.34 -4.4915 22 12 2 0 0 0 0.34713 1 21445 21445 51.63 31.176 1 1120800 54441 4170 36034 36055 53268 53268 -0.05879119444330172 YENTFQEL 8 Unmodified _YENTFQEL_ 0 0 0 nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;nc|ENSG00000138434|P28290-2|ITPRID2;ENST00000491720.5_1_2:182783318-182792989:+|nuORF;ENST00000440623.5_1_2:182781645-182792989:+|nuORF nc|ENSG00000138434|P28290-3|ITPRID2 nc|ENSG00000138434|P28290-3|ITPRID2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.267333984375 2 522.237647 1042.46074 0.66081 0.0003451 -0.10666 -5.5699E-05 0.55415 0.0002894 522.2374244933723 111.34 0.58832 107.11 106.83 107.42 -4.2289 26 16 2 0 0 0 0.44257 1 21439 21439 49.933 21.446 1 1645500 54442 4170 36034 36055 53269 53269 -0.05879119444330172 YEPGEKHAY 9 Unmodified _YEPGEKHAY_ 0 0 0 REV__nc|ENSG00000170381|O15041-2|SEMA3E REV__nc|ENSG00000170381|O15041-2|SEMA3E MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.785400390625 2 547.251089 1092.48762 0.22587 0.00012361 0.33699 0.00018442 0.56286 0.00030803 547.2512844562432 64.463 0.5553 61.465 61.12 61.675 -2.9975 23 15 2 0 0 0 0.42844 1 12440 12440 24.021 5.8742 1 1959400 + 54443 18158 36035 36056 53270 53270 -0.054920108331543815 YEPYDLLKY 9 Unmodified _YEPYDLLKY_ 0 0 0 REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1 REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3010864257812 2 602.300247 1202.58594 1.0251 0.00061743 -3.9036 -0.0023511 -2.8784 -0.0017337 602.2998587537453 135.42 0.14191 130.78 130.69 130.84 -4.6399 5 3 2 0 0 0 0.67531 1 26719 26719 7.9102 1.7044 1 1236900 + 54444 24887 36036 36057 53271 53271 -0.007248273079540013 YEQLMQLY 8 Unmodified _YEQLMQLY_ 0 0 0 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7705688476562 2 544.260068 1086.50558 0.33649 0.00018314 -0.13993 -7.6157E-05 0.19656 0.00010698 544.2598861723765 151.76 0.68048 147.01 146.71 147.39 -4.7523 43 18 3 0 0 0 0.97888 1 30131 30131 18.146 6.5061 1 6114100 54445 2837 36037 36058 53272 53272 -0.034210119026511165 YEQLMQLY 8 Unmodified _YEQLMQLY_ 0 0 0 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7879638671875 2 544.260068 1086.50558 0.16141 8.7847E-05 0.17849 9.7142E-05 0.33989 0.00018499 544.2601089455665 152.27 0.64685 147.03 146.74 147.39 -5.2365 41 17 3 0 0 0 0.097789 1 29547 29547 79.86 60.47 1 5183900 54446 2837 36037 36058 53273 53273 -0.034210119026511165 YEQLMQLY 8 Unmodified _YEQLMQLY_ 0 0 0 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7847900390625 2 544.260068 1086.50558 0.4546 0.00024742 0.027456 1.4943E-05 0.48205 0.00026236 544.2601131644827 152.08 0.98634 146.91 146.38 147.37 -5.1759 43 27 3 0 0 0 0.94768 1 29541 29541 24.021 2.2739 1 4337100 54447 2837 36037 36058 53274 53274 -0.034210119026511165 YEQLSMTSS 9 Unmodified _YEQLSMTSS_ 0 0 0 REV__nc|ENSG00000095637|Q9BX66-12|SORBS1 REV__nc|ENSG00000095637|Q9BX66-12|SORBS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6824951171875 2 523.228965 1044.44338 0.052624 2.7534E-05 -0.0083088 -4.3474E-06 0.044315 2.3187E-05 523.2289432305325 31.767 2.2457 29.537 28.816 31.062 -2.2305 141 63 3 0 0 0 0.11828 1 6008 6008 49.554 1.8056 1 11575000 + 54448 23965 36038 36059 53275 53275 -0.0770678304163539 YEQLSMTSS 9 Unmodified _YEQLSMTSS_ 0 0 0 REV__nc|ENSG00000095637|Q9BX66-12|SORBS1 REV__nc|ENSG00000095637|Q9BX66-12|SORBS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.7008666992188 2 523.228965 1044.44338 -0.30924 -0.0001618 0.32593 0.00017054 0.016696 8.736E-06 523.2290997349165 31.651 3.0172 29.624 27.862 30.879 -2.0264 175 85 4 0 0 0 0.11282 1 5683 5683 51.415 7.5569 1 9601200 + 54449 23965 36038 36059 53276 53276 -0.0770678304163539 YEQQLELPC 9 Carbamidomethyl (C) _YEQQLELPC(Carbamidomethyl (C))_ YEQQLELPC(1) YEQQLELPC(63) 0 1 0 ENSG00000184956|ENST00000421673|MUC6 ENSG00000184956|ENST00000421673|MUC6 ENSG00000184956|ENST00000421673|MUC6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2694702148438 2 590.271164 1178.52777 NaN NaN NaN NaN NaN NaN NaN 79.828 1 76.152 75.652 76.652 -3.676 0 0 0 0.029966 1 15213 15213 62.573 10.304 1 54450 6947 36039 36060 53277 53277 9 -0.05434832224887032 YEQQNFNLPV 10 Unmodified _YEQQNFNLPV_ 0 0 0 REV__ENSG00000172086|ENST00000347055|KRCC1 REV__ENSG00000172086|ENST00000347055|KRCC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 417.505126953125 3 417.87166 1250.59315 0.27398 0.00011449 -0.036057 -1.5067E-05 0.23792 9.9421E-05 418.2060008778662 31.209 0.2782 29.183 28.989 29.267 -2.0264 14 7 3 0 0 0 0.91149 1 5386 5386 1.9064 0 1 674010 + 54451 18272 36040 36061 53278 53278 -0.022120947075336517 YEQQRDNL 8 Unmodified _YEQQRDNL_ 0 0 0 nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5 nc|ENSG00000086065|Q9NZZ3-2|CHMP5 nc|ENSG00000086065|Q9NZZ3-2|CHMP5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.275146484375 2 533.25162 1064.48869 0.22142 0.00011807 -2.7867 -0.001486 -2.5652 -0.0013679 533.7520259964843 155.55 0.68024 150.77 150.34 151.02 -4.7791 22 18 2 0 0 0 8448 1 30836 30836 0.12286 0 1 1482600 54452 1690 36041 36062 53279 53279 -0.04097796464247949 YERCPAGRRNS 11 Unmodified _YERCPAGRRNS_ 0 0 0 ENST00000456601.1_1_2:239140634-239140760:+|nuORF ENST00000456601.1_1_2:239140634-239140760:+|nuORF ENST00000456601.1_1_2:239140634-239140760:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.228515625 3 436.879044 1307.6153 0.26108 0.00011406 1.6218 0.00070852 1.8829 0.00082258 436.87907457624976 87.144 0.17637 83.194 83.063 83.239 -3.9503 6 4 2 0 0 0 0.79645 1 16591 16591 4.1166 0 1 447940 54453 10030 36042 36063 53280 53280 -0.026201935107565077 YERDTKSV 8 Unmodified _YERDTKSV_ 0 0 0 REV__ENSG00000025796|ENST00000369002|SEC63 REV__ENSG00000025796|ENST00000369002|SEC63 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.2177429199219 3 333.169818 996.487624 NaN NaN NaN NaN NaN NaN NaN 88.641 1 88.641 88.141 89.141 0 0 0 0 0.21486 1 17302 17302 1.4819 0 1 + 54454 14003 36043 36064 53281 53281 -0.01076010833151031 YERDTKSV 8 Unmodified _YERDTKSV_ 0 0 0 REV__ENSG00000025796|ENST00000369002|SEC63 REV__ENSG00000025796|ENST00000369002|SEC63 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 333.2175598144531 3 333.169818 996.487624 NaN NaN NaN NaN NaN NaN NaN 89.324 1 89.324 88.824 89.824 0 0 0 0 0.21486 1 17443 17443 1.3295 0.36726 1 + 54455 14003 36043 36064 53282 53282 -0.01076010833151031 YERMFRWLVLR 11 Unmodified _YERMFRWLVLR_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.68212890625 3 523.622134 1567.84457 NaN NaN NaN NaN NaN NaN NaN 77.608 1 74.145 73.645 74.645 -3.4633 0 0 0 0.22632 1 15152 15152 0.50596 0 1 54456 1957 36044 36065 53283 53283 0.0833642545312614 YERPLEFQ 8 Unmodified _YERPLEFQ_ 0 0 0 REV__GNPTAB|p.F1228Lfs*5|2|0.13|ENSG00000111670|chr12:101749110-101749110|A/-|frameshift_variant REV__GNPTAB|p.F1228Lfs*5|2|0.13|ENSG00000111670|chr12:101749110-101749110|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2701416015625 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 129.05 1 129.05 128.55 129.55 0 0 0 0 0.21171 1 25490 25490 15.847 0 1 + 54457 15252 36045 36066 53284 53284 -0.01303133936426093 YERRKKSAWFL 11 Unmodified _YERRKKSAWFL_ 0 0 0 REV__ENSG00000138769|ENST00000307465|CDKL2 REV__ENSG00000138769|ENST00000307465|CDKL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3804931640625 2 742.41206 1482.80957 NaN NaN NaN NaN NaN NaN NaN 148.4 1 143.34 142.84 143.84 -5.0595 0 0 0 0.23698 1 28741 28741 1.4819 0.15237 1 + 54458 16488 36046 36067 53285 53285 0.08747505916835507 YERSIVDY 8 Unmodified _YERSIVDY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2816162109375 2 522.753464 1043.49238 -0.32153 -0.00016808 0.48614 0.00025413 0.16462 8.6054E-05 522.7538000424886 72.717 0.93155 69.407 68.776 69.707 -3.3107 45 25 3 0 0 0 0.94038 1 14135 14135 20.415 9.5906 1 3258200 54459 3608 36047 36068 53286 53286 -0.027631266903881624 YESIRQLA 8 Unmodified _YESIRQLA_ 0 0 0 REV__nc|ENSG00000145833|Q7L014|DDX46 REV__nc|ENSG00000145833|Q7L014|DDX46 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2659912109375 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 64.027 1 60.77 60.27 61.27 -3.2567 0 0 0 0.22692 1 12015 12015 0.25148 0 1 + 54460 16857 36048 36069 53287 53287 0.023328834091216777 YESLVKSTTKR 11 Unmodified _YESLVKSTTKR_ 0 0 0 nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1 nc|ENSG00000166025|Q8IY63-2|AMOTL1 nc|ENSG00000166025|Q8IY63-2|AMOTL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.89190673828125 3 437.913748 1310.71942 NaN NaN NaN NaN NaN NaN NaN 10.353 1 9.2592 8.7592 9.7592 -1.0936 0 0 0 0.23698 1 1172 1172 0 0 1 54461 5684 36049 36070 53288 53288 0.07648411797731569 YESMCECSSCC 11 Unmodified _YESMCECSSCC_ 0 0 0 ENST00000498611.5_1_22:50657800-50659866:-|nuORF ENST00000498611.5_1_22:50657800-50659866:-|nuORF ENST00000498611.5_1_22:50657800-50659866:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7734375 2 622.67347 1243.33239 NaN NaN NaN NaN NaN NaN NaN 141.12 1 141.12 140.62 141.62 0 0 0 0 0.22632 1 28110 28110 0 0 1 54462 10605 36050 36071 53289 53289 -0.2795457339955192 YESMCECSSCC 11 Unmodified _YESMCECSSCC_ 0 0 0 ENST00000498611.5_1_22:50657800-50659866:-|nuORF ENST00000498611.5_1_22:50657800-50659866:-|nuORF ENST00000498611.5_1_22:50657800-50659866:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7562866210938 2 622.67347 1243.33239 NaN NaN NaN NaN NaN NaN NaN 174.46 1 174.46 173.96 174.96 0 0 0 0 0.23698 1 36117 36117 0 0 1 54463 10605 36050 36071 53290 53290 -0.2795457339955192 YESMCECSSCC 11 Unmodified _YESMCECSSCC_ 0 0 0 ENST00000498611.5_1_22:50657800-50659866:-|nuORF ENST00000498611.5_1_22:50657800-50659866:-|nuORF ENST00000498611.5_1_22:50657800-50659866:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7601318359375 2 622.67347 1243.33239 NaN NaN NaN NaN NaN NaN NaN 113.15 1 108.69 108.19 109.19 -4.4539 0 0 0 0.22632 1 22293 22293 0.094841 0.094841 1 54464 10605 36050 36071 53291 53291 -0.2795457339955192 YESMCECSSCC 11 Unmodified _YESMCECSSCC_ 0 0 0 ENST00000498611.5_1_22:50657800-50659866:-|nuORF ENST00000498611.5_1_22:50657800-50659866:-|nuORF ENST00000498611.5_1_22:50657800-50659866:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7579345703125 2 622.67347 1243.33239 NaN NaN NaN NaN NaN NaN NaN 140.64 1 135.77 135.27 136.27 -4.8678 0 0 0 0.23698 1 27119 27119 1.1933 1.1933 1 54465 10605 36050 36071 53292 53292 -0.2795457339955192 YESVTEIVF 9 Unmodified _YESVTEIVF_ 0 0 0 REV__ENST00000474593.1_1_6:73985278-74020035:-|nuORF REV__ENST00000474593.1_1_6:73985278-74020035:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7731323242188 2 543.771322 1085.52809 NaN NaN NaN NaN NaN NaN NaN 65.145 1 62.098 61.598 62.598 -3.047 0 0 0 0.23508 1 12602 12602 12.532 3.1841 1 + 54466 22084 36051 36072 53293 53293 -0.011250892333919182 YETCEEEY 8 Unmodified _YETCEEEY_ 0 0 0 ENST00000514905.5_1_5:76414328-76430243:+|nuORF ENST00000514905.5_1_5:76414328-76430243:+|nuORF ENST00000514905.5_1_5:76414328-76430243:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2789916992188 2 533.189505 1064.36446 NaN NaN NaN NaN NaN NaN NaN 132.66 1 127.86 127.36 128.36 -4.799 0 0 0 0.2396 1 25533 25533 0.12286 0 1 54467 10778 36052 36073 53294 53294 -0.16515055066565765 YETFVPRAV 9 Unmodified _YETFVPRAV_ 0 0 0 REV__ENST00000504949.1_1_5:95067575-95091515:+|nuORF REV__ENST00000504949.1_1_5:95067575-95091515:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2680053710938 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 45.052 1 42.262 41.762 42.762 -2.79 0 0 0 0.19674 1 8480 8480 0.40827 0.15679 1 + 54468 17669 36053 36074 53295 53295 0.023337429602634074 YETRVPPGY 9 Unmodified _YETRVPPGY_ 0 0 0 REV__SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant REV__SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2642822265625 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 128.68 1 123.94 123.44 124.44 -4.7408 0 0 0 0.23508 1 24763 24763 10.074 0 1 + 54469 15758 36054 36075 53296 53296 -0.01303133936426093 YEVEIQTY 8 Unmodified _YEVEIQTY_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2794189453125 2 522.747847 1043.48114 0.77098 0.00040303 -0.36476 -0.00019068 0.40622 0.00021235 522.7475424646734 106.53 0.69506 102.44 102.16 102.85 -4.0913 36 19 3 0 0 0 0.97173 1 20547 20547 18.135 10.846 1 3712400 54470 3001 36055 36076 53297 53297 -0.03885948784522952 YEVGKSVF 8 Unmodified _YEVGKSVF_ 0 0 0 REV__ENSG00000118402|ENST00000369816|ELOVL4 REV__ENSG00000118402|ENST00000369816|ELOVL4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 100.03 1 95.868 95.368 96.368 -4.1594 0 0 0 0.23664 1 19655 19655 3.2813 3.208 1 + 54471 15550 36056 36077 53298 53298 0.00354693631857117 YEVPPPLN 8 Unmodified _YEVPPPLN_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 94.73 1 94.73 94.23 95.23 0 0 0 0 0.23664 1 18553 18553 3.2813 3.0298 1 54472 5525 36057 36078 53299 53299 0.00354693631857117 YEVPPPLN 8 Unmodified _YEVPPPLN_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16461181640625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 94.809 1 94.809 94.309 95.309 0 0 0 0 0.23664 1 18567 18567 3.2813 3.0298 1 54473 5525 36057 36078 53300 53300 0.00354693631857117 YEVPVPLNI 9 Unmodified _YEVPVPLNI_ 0 0 0 nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM;SI|p.G1494Efs*26|1|0.04|ENSG00000090402|chr3:164998599-164998600|-/AGAATTTTGTT|frameshift_variant;SI|p.G1778Efs*10|1|0.29|ENSG00000090402|chr3:164982330-164982330|C/-|frameshift_variant;ENSG00000090402|ENST00000264382|SI nc|ENSG00000257335|O43451-1|MGAM nc|ENSG00000257335|O43451-1|MGAM MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2720336914062 2 522.292225 1042.5699 NaN NaN NaN NaN NaN NaN NaN 106.89 1 102.48 101.98 102.98 -4.4121 0 0 0 0.22962 1 20506 20506 14.838 1.3304 1 54474 7944 36058 36079 53301 53301 0.05031511245783804 YEVVDTGWI 9 Unmodified _YEVVDTGWI_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000034412 REV__CON__ENSEMBL:ENSBTAP00000034412 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2664794921875 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 150.06 1 144.86 144.36 145.36 -5.1994 0 0 0 0.22251 1 29074 29074 16.942 1.0951 1 + + 54475 13511 36059 36080 53302 53302 -0.02425956030560883 YEWGIFLDRSR 11 Unmodified _YEWGIFLDRSR_ 0 0 0 REV__ENST00000512784.5_1_14:76777062-76777200:+|nuORF REV__ENST00000512784.5_1_14:76777062-76777200:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2453918457031 3 481.245609 1440.715 NaN NaN NaN NaN NaN NaN NaN 127.42 1 122.63 122.13 123.13 -4.7958 0 0 0 0.22632 1 24458 24458 0.172 0.16604 1 + 54476 22562 36060 36081 53303 53303 0.012269473748347082 YEWRKQQL 8 Unmodified _YEWRKQQL_ 0 0 0 REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3212280273438 2 575.803823 1149.59309 0.016794 9.6701E-06 -1.1689 -0.00067306 -1.1521 -0.00066339 575.8031460674498 100.89 0.69745 96.729 96.391 97.089 -4.1594 33 19 2 0 0 0 8448 1 19903 19903 1.4551 0.24024 1 3575600 + 54477 17908 36061 36082 53304 53304 0.024279500831198675 YEWWCSWSCWH 11 Unmodified _YEWWCSWSCWH_ 0 0 0 REV__ENST00000440083.6_1_12:6443346-6451099:-|nuORF REV__ENST00000440083.6_1_12:6443346-6451099:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 786.789794921875 2 786.794814 1571.57508 NaN NaN NaN NaN NaN NaN NaN 168.79 1 168.79 168.29 169.29 0 0 0 0 0.23698 1 34602 34602 0.30703 0.30703 1 + 54478 21702 36062 36083 53305 53305 -0.18784876225504377 YEYCMSEY 8 Unmodified _YEYCMSEY_ 0 0 0 ENST00000489450.1_1_1:76253229-76255866:+|nuORF;ENST00000461653.5_1_1:76253229-76255104:+|nuORF;ENST00000471759.5_1_1:76253229-76255856:+|nuORF;ENSG00000137955|ENST00000319942|RABGGTB ENST00000489450.1_1_1:76253229-76255866:+|nuORF ENST00000489450.1_1_1:76253229-76255866:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7847900390625 2 544.190993 1086.36743 0.45781 0.00024914 0.37728 0.00020531 0.83509 0.00045445 544.1914359004629 152.48 0.10358 147.3 147.23 147.33 -5.1759 4 2 2 0 0 0 1.0249 1 29541 29541 5.7604 0 1 1054000 54479 4129 36063 36084 53306 53306 -0.1722950321341159 YEYETCPD 8 Unmodified _YEYETCPD_ 0 0 0 ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1;TENM1|p.P1166Qfs*6|1|0.82|ENSG00000009694|chrX:124497214-124497214|G/-|frameshift_variant;TENM1|p.L1382Ffs*3|1|0.63|ENSG00000009694|chrX:124422576-124422577|-/A|frameshift_variant;TENM1|p.M1863Wfs*25|1|0.38|ENSG00000009694|chrX:124392132-124392132|T/-|frameshift_variant ENSG00000009694|ENST00000371130|TENM1 ENSG00000009694|ENST00000371130|TENM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 340.5050964355469 3 340.460269 1018.35898 -0.32296 -0.00010996 -1.0248 -0.00034889 -1.3477 -0.00045884 340.7948468184258 28.013 0.44789 28.013 27.665 28.113 0 18 12 2 0 0 0 0.89108 1 4919 4919 0.12286 0 1 790690 54480 1052 36064 36085 53307 53307 -0.1494673385840315 YEYTQYEEAL 10 Unmodified _YEYTQYEEAL_ 0 0 0 tr|U7SV11|U7SV11_FUSNUPSP1C-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01087PE=4SV=1 tr|U7SV11|U7SV11_FUSNUPSP1C-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01087PE=4SV=1 tr|U7SV11|U7SV11_FUSNUPSP1C-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01087PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.23590087890625 3 436.859198 1307.55576 0.43794 0.00019132 0.54502 0.0002381 0.98296 0.00042942 436.8593765661556 103.33 0.88542 99.294 98.864 99.75 -4.0395 74 24 4 0 0 0 0.75099 1 19812 19812 5.4027 0 1 9051600 54481 26226 36065 36086 53308 53308 -0.08571230763800486 YFAEEVGDGHH 11 Unmodified _YFAEEVGDGHH_ 0 0 0 REV__ENST00000523334.1_1_6:114270238-114277280:-|nuORF REV__ENST00000523334.1_1_6:114270238-114277280:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7667236328125 2 630.767634 1259.52072 NaN NaN NaN NaN NaN NaN NaN 10.277 1 9.1838 8.6838 9.6838 -1.0936 0 0 0 0.23698 1 1159 1159 0 0 1 + 54482 22664 36066 36087 53309 53309 -0.09866428781083414 YFAKYDDWH 9 Unmodified _YFAKYDDWH_ 0 0 0 REV__ENST00000504117.1_1_5:93752768-93812878:-|nuORF REV__ENST00000504117.1_1_5:93752768-93812878:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7720947265625 2 622.772188 1243.52982 NaN NaN NaN NaN NaN NaN NaN 7.8614 1 7.1823 6.6823 7.6823 -0.67913 0 0 0 0.23508 1 758 758 0.52476 0.12405 1 + 54483 18951 36067 36088 53310 53310 -0.08220035424778871 YFAYPIISA 9 Unmodified _YFAYPIISA_ 0 0 0 nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.26953125 2 522.773668 1043.53278 0.54955 0.00028729 2.1595 0.0011289 2.7091 0.0014162 522.7746540634679 23.13 0.31889 21.577 21.372 21.691 -1.5532 15 8 3 0 0 0 0.86532 1 3980 3980 4.756 4.2977 1 800550 54484 4181 36068 36089 53311 53311 0.012758397000425248 YFDGQDLV 8 Unmodified _YFDGQDLV_ 0 0 0 REV__ENST00000505372.1_1_5:102295723-102310166:+|nuORF REV__ENST00000505372.1_1_5:102295723-102310166:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7222900390625 2 478.721633 955.428712 0.26124 0.00012506 1.1737 0.00056187 1.4349 0.00068693 478.7221066101205 100.27 1.156 95.974 95.278 96.434 -4.297 62 33 2 0 0 0 0.60622 2 19121 19121;19165 21.747 3.6003 1 4408700 + 54485 16850 36069 36090 53312;53313 53312 -0.05078487127491371 YFDGQDLV 8 Unmodified _YFDGQDLV_ 0 0 0 REV__ENST00000505372.1_1_5:102295723-102310166:+|nuORF REV__ENST00000505372.1_1_5:102295723-102310166:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72222900390625 2 478.721633 955.428712 0.25542 0.00012228 1.1505 0.00055078 1.4059 0.00067305 478.7220278604925 99.806 1.4084 95.817 95.107 96.516 -3.9895 76 40 2 0 0 0 0.60622 1 19151 19151 21.747 21.747 1 4247500 + 54486 16850 36069 36090 53314 53314 -0.05078487127491371 YFEAEDRSY 9 Unmodified _YFEAEDRSY_ 0 0 0 REV__ENST00000478069.1_1_4:95290987-95291311:+|nuORF REV__ENST00000478069.1_1_4:95290987-95291311:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.251953125 2 590.251286 1178.48802 0.51801 0.00030575 1.0088 0.00059543 1.5268 0.00090119 590.251687781993 144.89 0.51596 139.82 139.49 140.01 -5.0671 22 14 2 0 0 0 0.34411 1 27967 27967 29.082 6.3453 1 4635100 + 54487 22133 36070 36091 53315 53315 -0.0940863590394656 YFEDTVAELE 10 Unmodified _YFEDTVAELE_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 405.85089111328125 3 405.852043 1214.5343 NaN NaN NaN NaN NaN NaN NaN 10.358 1 10.358 9.858 10.858 0 0 0 0 0.22588 1 1289 1289 0 0 1 54488 5053;26536 36071 36092 53316 53316 -0.06438615792535529 YFFKDQLYWRY 11 Unmodified _YFFKDQLYWRY_ 0 0 0 nc|ENSG00000198598|Q9ULZ9-2|MMP17;ENSG00000198598|ENST00000360564|MMP17 nc|ENSG00000198598|Q9ULZ9-2|MMP17 nc|ENSG00000198598|Q9ULZ9-2|MMP17 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7767944335938 3 543.601393 1627.78235 NaN NaN NaN NaN NaN NaN NaN 70.387 1 67.138 66.638 67.638 -3.2492 0 0 0 0.22632 1 13696 13696 0.094841 0 1 54489 7463 36072 36093 53317 53317 -0.006430224142150109 YFFLRLHQTLC 11 Unmodified _YFFLRLHQTLC_ 0 0 0 ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B ENSG00000127511|ENST00000248054|SIN3B ENSG00000127511|ENST00000248054|SIN3B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23944091796875 3 480.920069 1439.73838 NaN NaN NaN NaN NaN NaN NaN 151.07 1 145.89 145.39 146.39 -5.1759 0 0 0 0.23528 1 29284 29284 4.1166 1.4854 1 54490 3478 36073 36094 53318 53318 0.03609669887828204 YFGNEEKA 8 Unmodified _YFGNEEKA_ 0 0 0 REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7234191894531 2 479.219257 956.423961 0.084993 4.073E-05 -0.33329 -0.00015972 -0.2483 -0.00011899 479.2191512710867 39.77 0.38923 39.77 39.575 39.964 0 14 10 2 0 0 0 0.99312 1 7413 7413 14.838 0 1 1579300 + 54491 24877 36074 36095 53319 53319 -0.05599371270238862 YFGSDCCG 8 Unmodified _YFGSDCCG_ 0 0 0 TECTA|p.Y523C|1|0.42|ENSG00000109927|chr11:121125666-121125666|A/G|missense_variant TECTA|p.Y523C|1|0.42|ENSG00000109927|chr11:121125666-121125666|A/G|missense_variant TECTA|p.Y523C|1|0.42|ENSG00000109927|chr11:121125666-121125666|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 426.2904968261719 2 426.138564 850.262575 NaN NaN NaN NaN NaN NaN NaN 85.44 1 85.44 84.94 85.94 0 0 0 0 0.21486 1 16675 16675 0.79363 0 1 54492 25833 36075 36096 53320 53320 -0.16854579899336386 YFGSSDQK 8 Unmodified _YFGSSDQK_ 0 0 0 REV__ENST00000479765.5_1_3:167339411-167344748:-|nuORF REV__ENST00000479765.5_1_3:167339411-167344748:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.1240234375 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 150.33 1 145.13 144.63 145.63 -5.1994 0 0 0 0.21486 1 29130 29130 1.6526 1.1943 1 + 54493 22156 36076 36097 53321 53321 -0.05967657787289227 YFGSSDQK 8 Unmodified _YFGSSDQK_ 0 0 0 REV__ENST00000479765.5_1_3:167339411-167344748:-|nuORF REV__ENST00000479765.5_1_3:167339411-167344748:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.11297607421875 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 124.51 1 119.86 119.36 120.36 -4.6495 0 0 0 0.21486 1 23959 23959 0.45834 0 1 + 54494 22156 36076 36097 53322 53322 -0.05967657787289227 YFGSSDQK 8 Unmodified _YFGSSDQK_ 0 0 0 REV__ENST00000479765.5_1_3:167339411-167344748:-|nuORF REV__ENST00000479765.5_1_3:167339411-167344748:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.1702880859375 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 148.71 1 143.65 143.15 144.15 -5.0595 0 0 0 0.21486 1 28809 28809 0.45834 0 1 + 54495 22156 36076 36097 53323 53323 -0.05967657787289227 YFGSSDQK 8 Unmodified _YFGSSDQK_ 0 0 0 REV__ENST00000479765.5_1_3:167339411-167344748:-|nuORF REV__ENST00000479765.5_1_3:167339411-167344748:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.1483154296875 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 151 1 145.83 145.33 146.33 -5.1759 0 0 0 0.21486 1 29271 29271 0.45834 0 1 + 54496 22156 36076 36097 53324 53324 -0.05967657787289227 YFGSSDQK 8 Unmodified _YFGSSDQK_ 0 0 0 REV__ENST00000479765.5_1_3:167339411-167344748:-|nuORF REV__ENST00000479765.5_1_3:167339411-167344748:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.1334228515625 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 151.8 1 146.62 146.12 147.12 -5.1759 0 0 0 0.21486 1 29418 29418 0.45834 0 1 + 54497 22156 36076 36097 53325 53325 -0.05967657787289227 YFIINFFTLYK 11 Unmodified _YFIINFFTLYK_ 0 0 0 REV__tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1 REV__tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2653503417969 3 490.267351 1467.78022 NaN NaN NaN NaN NaN NaN NaN 83.791 1 80.092 79.592 80.592 -3.6985 0 0 0 0.22632 1 16002 16002 1.4551 0 1 + 54498 24992 36077 36098 53326 53326 0.0650454884798819 YFINRKRTF 9 Unmodified _YFINRKRTF_ 0 0 0 ENST00000430246.6_1_14:21733236-21733404:-|nuORF ENST00000430246.6_1_14:21733236-21733404:-|nuORF ENST00000430246.6_1_14:21733236-21733404:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7778930664062 2 622.848564 1243.68258 NaN NaN NaN NaN NaN NaN NaN 161.26 1 156.01 155.51 156.51 -5.2526 0 0 0 0.23508 1 31295 31295 7.9102 0.3012 1 54499 9770 36078 36099 53327 53327 0.07048204762509158 YFITRWTWRKL 11 Unmodified _YFITRWTWRKL_ 0 0 0 REV__ENST00000437348.5_1_11:31115730-31149186:-|nuORF REV__ENST00000437348.5_1_11:31115730-31149186:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3772583007812 2 785.438078 1568.8616 NaN NaN NaN NaN NaN NaN NaN 169.69 1 169.69 169.19 170.19 0 0 0 0 0.23698 1 34840 34840 2.7352 1.6637 1 + 54500 21677 36079 36100 53328 53328 0.09992669330563331 YFKQRKRLSF 10 Unmodified _YFKQRKRLSF_ 0 0 0 REV__ENST00000331426.5_2_2:152107948-152107984:-|nuORF REV__ENST00000331426.5_2_2:152107948-152107984:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2393798828125 3 458.266456 1371.77754 0.22054 0.00010106 -0.62627 -0.000287 -0.40573 -0.00018593 458.60047250807025 125.15 0.94875 120.5 120.14 121.08 -4.6495 54 26 3 0 0 0 0.75844 1 24112 24112 3.0723 0.22898 1 3159000 + 54501 20615 36080 36101 53329 53329 0.10652138233695041 YFKYIMRYKFY 11 Unmodified _YFKYIMRYKFY_ 0 0 0 REV__tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 REV__tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2770385742188 3 541.279374 1620.81629 NaN NaN NaN NaN NaN NaN NaN 139.15 1 134.2 133.7 134.7 -4.952 0 0 0 0.22632 1 26765 26765 0.026206 0 1 + 54502 25219 36081 36102 53330 53330 0.030716827531932722 YFKYRMIYKFY 11 Unmodified _YFKYRMIYKFY_ 0 0 0 tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.279052734375 3 541.279374 1620.81629 NaN NaN NaN NaN NaN NaN NaN 96.762 1 96.762 96.262 97.262 0 0 0 0 0.22632 1 18958 18958 0.172 0 1 54503 26269 36082 36103 53331 53331 0.030716827531932722 YFKYRMIYKFY 11 Unmodified _YFKYRMIYKFY_ 0 0 0 tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2736206054688 3 541.279374 1620.81629 NaN NaN NaN NaN NaN NaN NaN 80.361 1 76.851 76.351 77.351 -3.5102 0 0 0 0.22632 1 15695 15695 0.58532 0.41332 1 54504 26269 36082 36103 53332 53332 0.030716827531932722 YFKYRMIYKFY 11 Unmodified _YFKYRMIYKFY_ 0 0 0 tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2788696289062 3 541.279374 1620.81629 NaN NaN NaN NaN NaN NaN NaN 125.13 1 120.54 120.04 121.04 -4.5984 0 0 0 0.22632 1 24673 24673 0.58532 0 1 54505 26269 36082 36103 53333 53333 0.030716827531932722 YFKYRMIYKFY 11 Unmodified _YFKYRMIYKFY_ 0 0 0 tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2794799804688 3 541.279374 1620.81629 NaN NaN NaN NaN NaN NaN NaN 110.69 1 106.19 105.69 106.69 -4.4915 0 0 0 0.22632 1 21249 21249 2.732 2.1467 1 54506 26269 36082 36103 53334 53334 0.030716827531932722 YFLKVKLLKV 10 Unmodified _YFLKVKLLKV_ 0 0 0 REV__ENST00000482720.1_1_22:29194993-29196512:-|nuORF REV__ENST00000482720.1_1_22:29194993-29196512:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 625.9120483398438 2 625.915384 1249.81622 NaN NaN NaN NaN NaN NaN NaN 168.86 1 168.86 168.36 169.36 0 0 0 0 2.8426 1 34622 34622 0.0013812 0 1 + 54507 22194 36083 36104 53335 53335 0.20130050815487266 YFLVFWGVVD 10 Unmodified _YFLVFWGVVD_ 0 0 0 REV__nc|ENSG00000144366|Q9UBP9-2|GULP1 REV__nc|ENSG00000144366|Q9UBP9-2|GULP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.77099609375 2 622.82115 1243.62775 NaN NaN NaN NaN NaN NaN NaN 17.387 1 16.115 15.615 16.615 -1.2722 0 0 0 2.8426 1 2557 2557 0.0013812 0 1 + 54508 24083 36084 36105 53336 53336 0.015677731712230525 YFLWHTYRWLL 11 Unmodified _YFLWHTYRWLL_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2742309570312 3 533.281995 1596.82415 NaN NaN NaN NaN NaN NaN NaN 76.662 1 76.662 76.162 77.162 0 0 0 0 0.22632 1 14898 14898 0.50596 0.41111 1 54509 2824 36085 36106 53337 53337 0.04961578064967398 YFLWHTYRWLL 11 Unmodified _YFLWHTYRWLL_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.271728515625 3 533.281995 1596.82415 -0.33809 -0.0001803 -0.67971 -0.00036248 -1.0178 -0.00054277 533.2814804917729 16.335 0.20609 15.119 15.01 15.216 -1.2159 14 5 3 0 0 0 0.66298 1 2551 2551 0.094841 0.094841 1 890190 54510 2824 36085 36106 53338 53338 0.04961578064967398 YFLWHTYRWLL 11 Unmodified _YFLWHTYRWLL_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2800903320312 3 533.281995 1596.82415 NaN NaN NaN NaN NaN NaN NaN 169.57 1 164.78 164.28 165.28 -4.7898 0 0 0 0.22632 1 34359 34359 0.50596 0.41111 1 54511 2824 36085 36106 53339 53339 0.04961578064967398 YFLWHTYRWLL 11 Unmodified _YFLWHTYRWLL_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.27978515625 3 533.281995 1596.82415 NaN NaN NaN NaN NaN NaN NaN 16.375 1 15.153 14.653 15.653 -1.2219 0 0 0 0.22632 1 2352 2352 0.094841 0.094841 1 54512 2824 36085 36106 53340 53340 0.04961578064967398 YFLWHTYRWLL 11 Unmodified _YFLWHTYRWLL_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2819213867188 3 533.281995 1596.82415 -1.3997 -0.00074644 0.40624 0.00021664 -0.99347 -0.0005298 533.2820691290223 16.459 0.24403 15.105 14.993 15.237 -1.3534 15 6 3 0 0 0 0.66298 1 2334 2334 0.094841 0.094841 1 606820 54513 2824 36085 36106 53341 53341 0.04961578064967398 YFLWPLNQRWF 11 Unmodified _YFLWPLNQRWF_ 0 0 0 REV__ENSG00000164953|ENST00000453321|TMEM67 REV__ENSG00000164953|ENST00000453321|TMEM67 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.404052734375 2 785.403704 1568.79285 NaN NaN NaN NaN NaN NaN NaN 163.81 1 163.81 163.31 164.31 0 0 0 0 0.23698 1 33054 33054 1.4819 0.28856 1 + 54514 17729 36086 36107 53342 53342 0.031210050308573045 YFLWPLNQRWF 11 Unmodified _YFLWPLNQRWF_ 0 0 0 REV__ENSG00000164953|ENST00000453321|TMEM67 REV__ENSG00000164953|ENST00000453321|TMEM67 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.403564453125 2 785.403704 1568.79285 NaN NaN NaN NaN NaN NaN NaN 14.618 1 13.445 12.945 13.945 -1.173 0 0 0 0.22632 1 1990 1990 0 0 1 + 54515 17729 36086 36107 53343 53343 0.031210050308573045 YFLWPLNQRWF 11 Unmodified _YFLWPLNQRWF_ 0 0 0 REV__ENSG00000164953|ENST00000453321|TMEM67 REV__ENSG00000164953|ENST00000453321|TMEM67 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.403564453125 2 785.403704 1568.79285 NaN NaN NaN NaN NaN NaN NaN 14.626 1 13.453 12.953 13.953 -1.173 0 0 0 0.23698 1 1991 1991 0 0 1 + 54516 17729 36086 36107 53344 53344 0.031210050308573045 YFLWPLNQRWF 11 Unmodified _YFLWPLNQRWF_ 0 0 0 REV__ENSG00000164953|ENST00000453321|TMEM67 REV__ENSG00000164953|ENST00000453321|TMEM67 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4030151367188 2 785.403704 1568.79285 NaN NaN NaN NaN NaN NaN NaN 170.84 1 165.92 165.42 166.42 -4.9149 0 0 0 0.23698 1 33795 33795 1.4819 0.28856 1 + 54517 17729 36086 36107 53345 53345 0.031210050308573045 YFLYMRGLN 9 Unmodified _YFLYMRGLN_ 0 0 0 REV__ENST00000597774.5_1_19:50303271-50309027:+|nuORF REV__ENST00000597774.5_1_19:50303271-50309027:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2687377929688 2 588.797152 1175.57975 -0.99754 -0.00058735 0.1797 0.00010581 -0.81785 -0.00048154 588.7972716843727 19.446 0.48407 17.811 17.598 18.083 -1.6351 27 13 3 0 0 0 0.79776 1 2930 2930 1.8442 0 1 639890 + 54518 13071 36087 36108 53346 53346 -0.0010162402045352792 YFMFRWFFCRR 11 Unmodified _YFMFRWFFCRR_ 0 0 0 REV__CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant REV__CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 829.89453125 2 829.897208 1657.77986 NaN NaN NaN NaN NaN NaN NaN 171.58 1 166.66 166.16 167.16 -4.9149 0 0 0 0.23698 1 33992 33992 0.30703 0.03801 1 + 54519 13394 36088 36109 53347 53347 -0.02271472624533999 YFNSTSGR 8 Unmodified _YFNSTSGR_ 0 0 0 REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.14703369140625 3 311.147125 930.419545 NaN NaN NaN NaN NaN NaN NaN 150.55 1 145.81 145.31 146.31 -4.7323 0 0 0 0.21486 1 29902 29902 1.8442 0 1 + 54520 18588 36089 36110 53348 53348 -0.04844835693143068 YFNSTSGR 8 Unmodified _YFNSTSGR_ 0 0 0 REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 311.14886474609375 3 311.147125 930.419545 NaN NaN NaN NaN NaN NaN NaN 151.28 1 146.53 146.03 147.03 -4.7523 0 0 0 0.21486 1 30055 30055 0.45834 0 1 + 54521 18588 36089 36110 53349 53349 -0.04844835693143068 YFNSTSGR 8 Unmodified _YFNSTSGR_ 0 0 0 REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.14678955078125 3 311.147125 930.419545 NaN NaN NaN NaN NaN NaN NaN 152.6 1 147.34 146.84 147.84 -5.2626 0 0 0 0.21486 1 29589 29589 0.45834 0 1 + 54522 18588 36089 36110 53350 53350 -0.04844835693143068 YFPECFEF 8 Unmodified _YFPECFEF_ 0 0 0 ENSG00000162999|ENST00000354221|DUSP19 ENSG00000162999|ENST00000354221|DUSP19 ENSG00000162999|ENST00000354221|DUSP19 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2743530273438 2 541.220411 1080.42627 0.29029 0.00015711 1.7607 0.00095291 2.051 0.00111 541.721782446489 133.92 0.31494 129.11 128.99 129.3 -4.8175 12 8 2 0 0 0 0.89147 1 25767 25767 0.12286 0 1 1749500 54523 5391 36090 36111 53351 53351 -0.11072658856778617 YFPGYFDGQYW 11 Unmodified _YFPGYFDGQYW_ 0 0 0 ENSG00000131507|ENST00000253814|NDFIP1 ENSG00000131507|ENST00000253814|NDFIP1 ENSG00000131507|ENST00000253814|NDFIP1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.77716064453125 3 481.539911 1441.5979 NaN NaN NaN NaN NaN NaN NaN 61.848 1 58.479 57.979 58.979 -3.3694 0 0 0 0.22632 1 11536 11536 1.4551 1.4289 1 54524 3682 36091 36112 53352 53352 -0.10523210564770125 YFQYFPNPK 9 Unmodified _YFQYFPNPK_ 0 0 0 nc|ENSG00000121775|Q9GZU3-3|TMEM39B nc|ENSG00000121775|Q9GZU3-3|TMEM39B nc|ENSG00000121775|Q9GZU3-3|TMEM39B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2955322265625 2 602.295299 1202.57605 NaN NaN NaN NaN NaN NaN NaN 143.82 1 138.75 138.25 139.25 -5.0671 0 0 0 0.1963 1 27730 27730 0.073264 0 1 54525 12300 36092 36113 53353 53353 -0.017139705226782098 YFRDKSILWWR 11 Unmodified _YFRDKSILWWR_ 0 0 0 REV__FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant REV__FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3883666992188 2 785.419885 1568.82522 NaN NaN NaN NaN NaN NaN NaN 169.03 1 169.03 168.53 169.53 0 0 0 0 0.23698 1 34672 34672 2.7352 1.7729 1 + 54526 23527 36093 36114 53354 53354 0.0635579243387383 YFRNYELNIIP 11 Unmodified _YFRNYELNIIP_ 0 0 0 REV__tr|U7T6V8|U7T6V8_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00025PE=3SV=1 REV__tr|U7T6V8|U7T6V8_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00025PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2431335449219 3 481.253993 1440.74015 NaN NaN NaN NaN NaN NaN NaN 108.09 1 103.67 103.17 104.17 -4.4121 0 0 0 0.22632 1 20738 20738 1.4551 0 1 + 54527 25456 36094 36115 53355 53355 0.037410021774348934 YFRTWHTRKQF 11 Unmodified _YFRTWHTRKQF_ 0 0 0 ASPM|p.Q2874H|1|0.24|ENSG00000066279|chr1:197100629-197100629|T/G|missense_variant ASPM|p.Q2874H|1|0.24|ENSG00000066279|chr1:197100629-197100629|T/G|missense_variant ASPM|p.Q2874H|1|0.24|ENSG00000066279|chr1:197100629-197100629|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.407958984375 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 81.428 1 77.871 77.371 78.371 -3.557 0 0 0 0.23634 1 15901 15901 3.2813 0 1 54528 241 36095 36116 53356 53356 0.03841737631273645 YFRTWHTRKQF 11 Unmodified _YFRTWHTRKQF_ 0 0 0 ASPM|p.Q2874H|1|0.24|ENSG00000066279|chr1:197100629-197100629|T/G|missense_variant ASPM|p.Q2874H|1|0.24|ENSG00000066279|chr1:197100629-197100629|T/G|missense_variant ASPM|p.Q2874H|1|0.24|ENSG00000066279|chr1:197100629-197100629|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4087524414062 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 96.12 1 92.07 91.57 92.57 -4.0496 0 0 0 0.23698 1 18843 18843 1.3295 0 1 54529 241 36095 36116 53357 53357 0.03841737631273645 YFRTWHTRKQF 11 Unmodified _YFRTWHTRKQF_ 0 0 0 ASPM|p.Q2874H|1|0.24|ENSG00000066279|chr1:197100629-197100629|T/G|missense_variant ASPM|p.Q2874H|1|0.24|ENSG00000066279|chr1:197100629-197100629|T/G|missense_variant ASPM|p.Q2874H|1|0.24|ENSG00000066279|chr1:197100629-197100629|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4075317382812 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 89.096 1 85.346 84.846 85.846 -3.7501 0 0 0 0.23698 1 17058 17058 0.35063 0 1 54530 241 36095 36116 53358 53358 0.03841737631273645 YFRTWHTRKQF 11 Unmodified _YFRTWHTRKQF_ 0 0 0 ASPM|p.Q2874H|1|0.24|ENSG00000066279|chr1:197100629-197100629|T/G|missense_variant ASPM|p.Q2874H|1|0.24|ENSG00000066279|chr1:197100629-197100629|T/G|missense_variant ASPM|p.Q2874H|1|0.24|ENSG00000066279|chr1:197100629-197100629|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.406494140625 2 785.407309 1568.80007 NaN NaN NaN NaN NaN NaN NaN 145.47 1 140.53 140.03 141.03 -4.9445 0 0 0 0.23698 1 28125 28125 0.35063 0 1 54531 241 36095 36116 53359 53359 0.03841737631273645 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3770141601562 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 75.468 1 75.468 74.968 75.968 0 0 0 0 2.8426 1 14658 14658 0.043787 0.017581 1 54532 8545 36096 36117 53360 53360 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3742065429688 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 141.55 1 141.55 141.05 142.05 0 0 0 0 2.8426 1 28206 28206 0 0 1 54533 8545 36096 36117 53361 53361 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3742065429688 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 141.57 1 141.57 141.07 142.07 0 0 0 0 0.22588 1 28208 28208 0.40072 0.050084 1 54534 8545 36096 36117 53362 53362 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3751831054688 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 144.04 1 144.04 143.54 144.54 0 0 0 0 0.22588 1 28765 28765 0.40072 0.050084 1 54535 8545 36096 36117 53363 53363 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3775634765625 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 166.32 1 166.32 165.82 166.82 0 0 0 0 2.8426 1 33867 33867 0.043787 0.017581 1 54536 8545 36096 36117 53364 53364 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3790283203125 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 166.57 1 166.57 166.07 167.07 0 0 0 0 0.22588 1 33948 33948 1.4819 0.28856 1 54537 8545 36096 36117 53365 53365 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3743286132812 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 167.54 1 167.54 167.04 168.04 0 0 0 0 0.22588 1 34242 34242 6.7232 6.4161 1 54538 8545 36096 36117 53366 53366 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3740844726562 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 171.22 1 171.22 170.72 171.72 0 0 0 0 2.8426 1 35260 35260 0.043787 0.017581 1 54539 8545 36096 36117 53367 53367 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3710327148438 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 169.86 1 165.07 164.57 165.57 -4.7898 0 0 0 0.22588 1 34431 34431 0.40072 0.050084 1 54540 8545 36096 36117 53368 53368 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.37158203125 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 170.14 1 165.35 164.85 165.85 -4.7898 0 0 0 0.22588 1 34510 34510 0.40072 0.050084 1 54541 8545 36096 36117 53369 53369 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2609252929688 3 541.252036 1620.73428 0.21095 0.00011418 0.5459 0.00029547 0.75685 0.00040964 541.5866169750357 152.65 0.218 147.38 147.29 147.51 -5.2669 6 5 2 0 0 0 0.76714 1 29586 29586 0.12286 0.049601 1 2038400 54542 8545 36096 36117 53370 53370 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3773193359375 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 143.46 1 138.43 137.93 138.93 -5.0261 0 0 0 2.8426 1 27657 27657 0.043787 0.017581 1 54543 8545 36096 36117 53371 53371 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3733520507812 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 145.53 1 140.43 139.93 140.93 -5.0931 0 0 0 0.22588 1 28122 28122 0.35063 0.043601 1 54544 8545 36096 36117 53372 53372 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3765869140625 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 149.69 1 144.49 143.99 144.99 -5.1994 0 0 0 0.22588 1 28995 28995 1.4819 1.1313 1 54545 8545 36096 36117 53373 53373 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3741455078125 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 156.16 1 150.88 150.38 151.38 -5.2854 0 0 0 2.8426 1 30294 30294 0 0 1 54546 8545 36096 36117 53374 53374 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3739013671875 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 158.61 1 153.33 152.83 153.83 -5.2748 0 0 0 0.22588 1 30783 30783 0.40072 0.050084 1 54547 8545 36096 36117 53375 53375 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2759399414062 3 541.252036 1620.73428 NaN NaN NaN NaN NaN NaN NaN 158.92 1 153.64 153.14 154.14 -5.2748 0 0 0 2.8426 1 30847 30847 0.13989 0 1 54548 8545 36096 36117 53376 53376 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 811.3716430664062 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 159.65 1 154.42 153.92 154.92 -5.2361 0 0 0 0.22588 1 30989 30989 0.45834 0.15131 1 54549 8545 36096 36117 53377 53377 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2806396484375 3 541.252036 1620.73428 0.15317 8.2906E-05 -0.25962 -0.00014052 -0.10644 -5.7612E-05 541.586360581955 141.76 0.16931 136.77 136.7 136.87 -4.9877 5 4 2 0 0 0 0.91149 1 27301 27301 0.13989 0 1 3891000 54550 8545 36096 36117 53378 53378 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.37548828125 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 96.618 1 92.699 92.199 93.199 -3.9194 0 0 0 2.8426 1 18539 18539 0.13989 0.13989 1 54551 8545 36096 36117 53379 53379 -0.05126051543606991 YFSFWWWWWK 10 Unmodified _YFSFWWWWWK_ 0 0 0 ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF ENST00000300134.7_1_12:57504946-57505147:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 810.8841552734375 2 811.374415 1620.73428 NaN NaN NaN NaN NaN NaN NaN 175.03 1 170.14 169.64 170.64 -4.8916 0 0 0 0.22588 1 34875 34875 0.40072 0.050084 1 54552 8545 36096 36117 53380 53380 -0.05126051543606991 YFSKGENS 8 Unmodified _YFSKGENS_ 0 0 0 ENST00000269122.7_2_17:57738948-57738993:+|nuORF ENST00000269122.7_2_17:57738948-57738993:+|nuORF ENST00000269122.7_2_17:57738948-57738993:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.1968688964844 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 12.714 1 11.593 11.093 12.093 -1.1206 0 0 0 0.21486 1 1538 1538 0.45834 0 1 54553 8392 36097 36118 53381 53381 -0.05967657787277858 YFSNNSSI 8 Unmodified _YFSNNSSI_ 0 0 0 ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2040710449219 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 12.834 1 12.834 12.334 13.334 0 0 0 0 0.21486 1 1814 1814 0.45834 0 1 54554 1477 36098 36119 53382 53382 -0.05967657787289227 YFSNNSSI 8 Unmodified _YFSNNSSI_ 0 0 0 ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.216796875 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 20.42 1 20.42 19.92 20.92 0 0 0 0 0.21486 1 3379 3379 0.45834 0 1 54555 1477 36098 36119 53383 53383 -0.05967657787289227 YFSNNSSI 8 Unmodified _YFSNNSSI_ 0 0 0 ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2201232910156 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 23.871 1 23.871 23.371 24.371 0 0 0 0 0.21486 1 4090 4090 0.45834 0 1 54556 1477 36098 36119 53384 53384 -0.05967657787289227 YFSNNSSI 8 Unmodified _YFSNNSSI_ 0 0 0 ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.177978515625 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 25.354 1 25.354 24.854 25.854 0 0 0 0 0.21486 1 4395 4395 0.45834 0 1 54557 1477 36098 36119 53385 53385 -0.05967657787289227 YFSNNSSI 8 Unmodified _YFSNNSSI_ 0 0 0 ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2061462402344 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 54.244 1 54.244 53.744 54.744 0 0 0 0 0.21486 1 10342 10342 0.45834 0 1 54558 1477 36098 36119 53386 53386 -0.05967657787289227 YFSNNSSI 8 Unmodified _YFSNNSSI_ 0 0 0 ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.23687744140625 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 4.5744 1 3.5344 3.0344 4.0344 -1.04 0 0 0 0.21486 1 118 118 0.45834 0 1 54559 1477 36098 36119 53387 53387 -0.05967657787289227 YFSNNSSI 8 Unmodified _YFSNNSSI_ 0 0 0 ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.2369079589844 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 29.163 1 27.27 26.77 27.77 -1.8928 0 0 0 0.21486 1 4951 4951 0.45834 0 1 54560 1477 36098 36119 53388 53388 -0.05967657787289227 YFSNNSSI 8 Unmodified _YFSNNSSI_ 0 0 0 ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2332458496094 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 57.387 1 54.211 53.711 54.711 -3.1761 0 0 0 0.21486 1 10697 10697 0.45834 0 1 54561 1477 36098 36119 53389 53389 -0.05967657787289227 YFSNNSSI 8 Unmodified _YFSNNSSI_ 0 0 0 ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A ENSG00000072954|ENST00000187762|TMEM38A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2060546875 3 311.14338 930.408311 NaN NaN NaN NaN NaN NaN NaN 57.719 1 54.514 54.014 55.014 -3.2052 0 0 0 0.21486 1 10758 10758 0.45834 0 1 54562 1477 36098 36119 53390 53390 -0.05967657787289227 YFSSHWREKWK 11 Unmodified _YFSSHWREKWK_ 0 0 0 ENST00000216500.9_1_14:60611635-60611674:-|nuORF ENST00000216500.9_1_14:60611635-60611674:-|nuORF ENST00000216500.9_1_14:60611635-60611674:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 518.628173828125 3 518.59312 1552.75753 NaN NaN NaN NaN NaN NaN NaN 144.8 1 140.14 139.64 140.64 -4.6694 0 0 0 0.22632 1 28686 28686 1.4551 0 1 54563 8117 36099 36120 53391 53391 0.003263425030581857 YFTEYIFILSI 11 Unmodified _YFTEYIFILSI_ 0 0 0 REV__nc|ENSG00000164889|P04920-2|SLC4A2;REV__ENSG00000114923|ENST00000358055|SLC4A3 REV__ENSG00000114923|ENST00000358055|SLC4A3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 704.8721313476562 2 704.873579 1407.73261 NaN NaN NaN NaN NaN NaN NaN 168.36 1 163.57 163.07 164.07 -4.7898 0 0 0 0.21631 1 34025 34025 0.11104 0 1 + 54564 15393;17719 36100 36121 53392 53392 0.04504849857130466 YFTEYWYEKLK 11 Unmodified _YFTEYWYEKLK_ 0 0 0 tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3877563476562 2 785.384842 1568.75513 NaN NaN NaN NaN NaN NaN NaN 12.428 1 12.428 11.928 12.928 0 0 0 0 0.22632 1 1731 1731 0.00056442 0 1 54565 26283 36101 36122 53393 53393 -0.006495507452882521 YFTEYWYEKLK 11 Unmodified _YFTEYWYEKLK_ 0 0 0 tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 tr|U7SYS2|U7SYS2_FUSNUPhosphatidylglycerollysyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00914PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3844604492188 2 785.384842 1568.75513 NaN NaN NaN NaN NaN NaN NaN 54.829 1 54.829 54.329 55.329 0 0 0 0 0.22632 1 10459 10459 0 0 1 54566 26283 36101 36122 53394 53394 -0.006495507452882521 YFTIKLYWWRF 11 Unmodified _YFTIKLYWWRF_ 0 0 0 RNF175|p.K270Sfs*13|1|0.47|ENSG00000145428|chr4:153712532-153712532|T/-|frameshift_variant;ENSG00000145428|ENST00000347063|RNF175 RNF175|p.K270Sfs*13|1|0.47|ENSG00000145428|chr4:153712532-153712532|T/-|frameshift_variant RNF175|p.K270Sfs*13|1|0.47|ENSG00000145428|chr4:153712532-153712532|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2740478515625 3 541.622128 1621.84456 0.13403 7.2592E-05 -0.55693 -0.00030165 -0.4229 -0.00022905 541.6219404708434 139.79 0.10243 134.84 134.78 134.88 -4.952 4 2 2 0 0 0 0.89134 1 26903 26903 0.094841 0 1 947130 54567 4607 36102 36123 53395 53395 0.05850748724787991 YFTLSSLT 8 Unmodified _YFTLSSLT_ 0 0 0 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant;ENSG00000089558|ENST00000264661|KCNH4;ENST00000452398.5_1_3:19388190-19491848:+|nuORF;nc|ENSG00000183960|Q96L42-2|KCNH8;ENSG00000183960|ENST00000328405|KCNH8 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant;ENSG00000183960|ENST00000328405|KCNH8 KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.22186279296875 3 311.163893 930.469849 NaN NaN NaN NaN NaN NaN NaN 18.444 1 17.141 16.641 17.641 -1.3033 0 0 0 0.21486 1 2766 2766 0.45834 0 1 54568 1763;6882 36103 36124 53396 53396 0.0018327391198909027 YFVAFAPF 8 Unmodified _YFVAFAPF_ 0 0 0 REV__ENST00000459831.1_1_1:89524386-89525013:-|nuORF REV__ENST00000459831.1_1_1:89524386-89525013:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2424621582031 2 481.244547 960.47454 NaN NaN NaN NaN NaN NaN NaN 175.6 1 175.6 175.1 176.1 0 0 0 0 0.21486 1 36377 36377 0.79363 0 1 + 54569 21868 36104 36125 53397 53397 -0.007277971545818218 YFVAFAPF 8 Unmodified _YFVAFAPF_ 0 0 0 REV__ENST00000459831.1_1_1:89524386-89525013:-|nuORF REV__ENST00000459831.1_1_1:89524386-89525013:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.24249267578125 2 481.244547 960.47454 NaN NaN NaN NaN NaN NaN NaN 175.84 1 175.84 175.34 176.34 0 0 0 0 0.21486 1 36426 36426 0.79363 0 1 + 54570 21868 36104 36125 53398 53398 -0.007277971545818218 YFVAGSYM 8 Unmodified _YFVAGSYM_ 0 0 0 REV__TAAR8|p.T161M|1|0.17|ENSG00000146385|chr6:132553174-132553174|C/T|missense_variant REV__TAAR8|p.T161M|1|0.17|ENSG00000146385|chr6:132553174-132553174|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 313.1184387207031 3 313.142323 936.40514 NaN NaN NaN NaN NaN NaN NaN 91.333 1 87.408 86.908 87.908 -3.9251 0 0 0 0.21486 1 17879 17879 1.8442 0.19162 1 + 54571 16884 36105 36126 53399 53399 -0.06560624165638274 YFVMNDTHAF 10 Unmodified _YFVMNDTHAF_ 0 0 0 REV__B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant REV__B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.77685546875 2 622.773874 1243.53319 NaN NaN NaN NaN NaN NaN NaN 143.98 1 139.03 138.53 139.53 -4.9445 0 0 0 0.22588 1 27796 27796 6.7232 0.51738 1 + 54572 13169 36106 36127 53400 53400 -0.07883108642408843 YFVTVVTLH 9 Unmodified _YFVTVVTLH_ 0 0 0 REV__ENSG00000182083|ENST00000319423|OR6B2 REV__ENSG00000182083|ENST00000319423|OR6B2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016906738281 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 127.31 1 122.69 122.19 123.19 -4.6172 0 0 0 0.23508 1 25105 25105 2.7352 0 1 + 54573 18612 36107 36128 53401 53401 0.05019217482708882 YFVTVVTLH 9 Unmodified _YFVTVVTLH_ 0 0 0 REV__ENSG00000182083|ENST00000319423|OR6B2 REV__ENSG00000182083|ENST00000319423|OR6B2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2019348144531 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 127.97 1 123.15 122.65 123.65 -4.817 0 0 0 0.23508 1 24563 24563 4.897 2.1618 1 + 54574 18612 36107 36128 53402 53402 0.05019217482708882 YFVVLKVLFL 10 Unmodified _YFVVLKVLFL_ 0 0 0 ENST00000305352.6_1_1:101706579-101706750:+|nuORF ENST00000305352.6_1_1:101706579-101706750:+|nuORF ENST00000305352.6_1_1:101706579-101706750:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.2578125 4 310.948056 1239.76312 -0.66973 -0.00020825 1.3163 0.00040931 0.64659 0.00020106 310.94827212111716 13.89 0.20736 12.717 12.621 12.828 -1.173 8 5 2 0 0 0 0.91149 1 1861 1861 0.15932 0 1 341440 54575 8600 36108 36129 53403 53403 0.15282673032834282 YFWFDLQAY 9 Unmodified _YFWFDLQAY_ 0 0 0 ENST00000520923.5_1_8:101051146-101092499:-|nuORF;RGS22|p.K914Nfs*18|3|0.3|ENSG00000132554|chr8:100002250-100002250|T/-|frameshift_variant;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;RGS22|p.Q705K|1|0.3|ENSG00000132554|chr8:100038984-100038984|G/T|missense_variant ENST00000520923.5_1_8:101051146-101092499:-|nuORF ENST00000520923.5_1_8:101051146-101092499:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 626.8156127929688 2 626.787307 1251.56006 NaN NaN NaN NaN NaN NaN NaN 11.238 1 10.334 9.8342 10.834 -0.90401 0 0 0 0.23508 1 1473 1473 0 0 1 54576 3742 36109 36130 53404 53404 -0.055656767595564816 YFWKDREFHEL 11 Unmodified _YFWKDREFHEL_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.376220703125 2 785.377883 1568.74121 NaN NaN NaN NaN NaN NaN NaN 178.38 1 173.59 173.09 174.09 -4.7898 0 0 0 0.23698 1 36495 36495 0.35063 0.043601 1 54577 5759 36110 36131 53405 53405 -0.02040783453662698 YFWNRFSFWNY 11 Unmodified _YFWNRFSFWNY_ 0 0 0 SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant;ENSG00000061656|ENST00000374273|SPAG4 SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3643188476562 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 135.42 1 135.42 134.92 135.92 0 0 0 0 0.22632 1 26823 26823 0.094841 0.094841 1 54578 1317 36111 36132 53406 53406 -0.06912748762533738 YFWNRFSFWNY 11 Unmodified _YFWNRFSFWNY_ 0 0 0 SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant;ENSG00000061656|ENST00000374273|SPAG4 SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3695678710938 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 160.75 1 160.75 160.25 161.25 0 0 0 0 0.23698 1 32277 32277 0.35063 0.043601 1 54579 1317 36111 36132 53407 53407 -0.06912748762533738 YFWNRFSFWNY 11 Unmodified _YFWNRFSFWNY_ 0 0 0 SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant;ENSG00000061656|ENST00000374273|SPAG4 SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3668212890625 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 165.97 1 165.97 165.47 166.47 0 0 0 0 0.23698 1 33748 33748 0.35063 0.043601 1 54580 1317 36111 36132 53408 53408 -0.06912748762533738 YFWNRFSFWNY 11 Unmodified _YFWNRFSFWNY_ 0 0 0 SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant;ENSG00000061656|ENST00000374273|SPAG4 SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3661499023438 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 166.9 1 166.9 166.4 167.4 0 0 0 0 0.23698 1 34056 34056 0.35063 0.081612 1 54581 1317 36111 36132 53409 53409 -0.06912748762533738 YFWRCHVFIWI 11 Unmodified _YFWRCHVFIWI_ 0 0 0 TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3960571289062 2 785.394825 1568.7751 NaN NaN NaN NaN NaN NaN NaN 117.87 1 113.26 112.76 113.76 -4.6106 0 0 0 0.22632 1 22621 22621 0.50596 0 1 54582 26526 36112 36133 53410 53410 0.013459665043683344 YFWRCHVFIWI 11 Unmodified _YFWRCHVFIWI_ 0 0 0 TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant TRPV2|p.R457C|1|0.25|ENSG00000187688|chr17:16428335-16428335|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3936767578125 2 785.394825 1568.7751 NaN NaN NaN NaN NaN NaN NaN 140.44 1 135.57 135.07 136.07 -4.8678 0 0 0 0.23698 1 27079 27079 1.3295 0 1 54583 26526 36112 36133 53411 53411 0.013459665043683344 YFWRRHVFIWI 11 Unmodified _YFWRRHVFIWI_ 0 0 0 ENST00000441875.1_1_17:16330801-16331912:+|nuORF;ENSG00000187688|ENST00000338560|TRPV2 ENST00000441875.1_1_17:16330801-16331912:+|nuORF ENST00000441875.1_1_17:16330801-16331912:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.267333984375 3 541.629617 1621.86702 0.4654 0.00025207 -1.2186 -0.00066001 -0.75316 -0.00040793 541.9636412803942 153.25 0.10448 148.03 147.97 148.07 -5.2209 4 2 2 0 0 0 0.89124 1 29704 29704 0.0072825 0 1 1042700 54584 7120 36113 36134 53412 53412 0.08096392913080308 YFWSLMMVMYR 11 Unmodified _YFWSLMMVMYR_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|352|3|anti-sense L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|352|3|anti-sense L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|352|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 509.57183837890625 3 509.571283 1525.69202 NaN NaN NaN NaN NaN NaN NaN 166.09 1 161.3 160.8 161.8 -4.7898 0 0 0 0.23698 1 33322 33322 0.45452 0 1 54585 12047 36114 36135 53413 53413 -0.049798543301676546 YFWSYHQMY 9 Unmodified _YFWSYHQMY_ 0 0 0 REV__ENST00000441222.7_1_4:53463611-53463788:-|nuORF REV__ENST00000441222.7_1_4:53463611-53463788:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 442.521484375 3 442.186703 1323.53828 NaN NaN NaN NaN NaN NaN NaN 103.76 1 103.76 103.26 104.26 0 0 0 0 0.19661 1 20390 20390 0.40827 0 1 + 54586 21710 36115 36136 53414 53414 -0.11054804779791993 YFYFFNKHLRW 11 Unmodified _YFYFFNKHLRW_ 0 0 0 REV__SMIM10|p.R61H|1|0.2|ENSG00000184785|chrX:134991277-134991277|G/A|missense_variant REV__SMIM10|p.R61H|1|0.2|ENSG00000184785|chrX:134991277-134991277|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2760009765625 3 540.941861 1619.80375 0.51346 0.00027775 1.725 0.00093314 2.2385 0.0012109 541.2765015600243 158.91 0.11058 153.64 153.55 153.66 -5.2712 4 2 2 0 0 0 0.66234 1 30837 30837 0.50596 0.49867 1 1074600 + 54587 24659 36116 36137 53415 53415 0.018644074051735515 YGAAMEVEVL 10 Unmodified _YGAAMEVEVL_ 0 0 0 ENSG00000169258|ENST00000303991|GPRIN1 ENSG00000169258|ENST00000303991|GPRIN1 ENSG00000169258|ENST00000303991|GPRIN1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2672119140625 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 20.337 1 18.701 18.201 19.201 -1.6351 0 0 0 2.8426 1 3126 3126 0.26539 0 1 54588 5976 36117 36138 53416 53416 -0.02089029248213592 YGCGCSSC 8 Unmodified _YGCGCSSC_ 0 0 0 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 390.1114807128906 2 390.111492 778.208431 NaN NaN NaN NaN NaN NaN NaN 169.87 1 165.08 164.58 165.58 -4.7898 0 0 0 0.21486 1 34436 34436 0 0 1 + 54589 24315 36118 36139 53417 53417 -0.18954495322554976 YGCGCSSC 8 Unmodified _YGCGCSSC_ 0 0 0 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 390.11126708984375 2 390.111492 778.208431 NaN NaN NaN NaN NaN NaN NaN 168.85 1 163.93 163.43 164.43 -4.9295 0 0 0 0.21486 1 33307 33307 0 0 1 + 54590 24315 36118 36139 53418 53418 -0.18954495322554976 YGCGCSSC 8 Unmodified _YGCGCSSC_ 0 0 0 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 390.1118469238281 2 390.111492 778.208431 NaN NaN NaN NaN NaN NaN NaN 171.75 1 166.83 166.33 167.33 -4.9149 0 0 0 0.21486 1 34033 34033 0 0 1 + 54591 24315 36118 36139 53419 53419 -0.18954495322554976 YGCGCSSC 8 Unmodified _YGCGCSSC_ 0 0 0 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 390.1108703613281 2 390.111492 778.208431 NaN NaN NaN NaN NaN NaN NaN 172 1 167.1 166.6 167.6 -4.9001 0 0 0 0.21486 1 34096 34096 0 0 1 + 54592 24315 36118 36139 53420 53420 -0.18954495322554976 YGCGCSSC 8 Unmodified _YGCGCSSC_ 0 0 0 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 390.1114501953125 2 390.111492 778.208431 NaN NaN NaN NaN NaN NaN NaN 175.09 1 170.21 169.71 170.71 -4.8845 0 0 0 0.21486 1 34805 34805 0 0 1 + 54593 24315 36118 36139 53421 53421 -0.18954495322554976 YGCGCSSC 8 Unmodified _YGCGCSSC_ 0 0 0 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.11041259765625 2 390.111492 778.208431 NaN NaN NaN NaN NaN NaN NaN 173.01 1 168.13 167.63 168.63 -4.881 0 0 0 0.21486 1 34373 34373 0 0 1 + 54594 24315 36118 36139 53422 53422 -0.18954495322554976 YGCGCSSC 8 Unmodified _YGCGCSSC_ 0 0 0 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.11163330078125 2 390.111492 778.208431 NaN NaN NaN NaN NaN NaN NaN 174.18 1 169.29 168.79 169.79 -4.8916 0 0 0 0.21486 1 34665 34665 0.79363 0 1 + 54595 24315 36118 36139 53423 53423 -0.18954495322554976 YGCGCSSC 8 Unmodified _YGCGCSSC_ 0 0 0 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.1113586425781 2 390.111492 778.208431 NaN NaN NaN NaN NaN NaN NaN 174.48 1 169.59 169.09 170.09 -4.8916 0 0 0 0.21486 1 34737 34737 0 0 1 + 54596 24315 36118 36139 53424 53424 -0.18954495322554976 YGCGCSSC 8 Unmodified _YGCGCSSC_ 0 0 0 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 REV__nc|ENSG00000284635|A0A286YFG1|SCYGR8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 390.1114196777344 2 390.111492 778.208431 NaN NaN NaN NaN NaN NaN NaN 174.84 1 169.95 169.45 170.45 -4.8916 0 0 0 0.21486 1 34822 34822 0 0 1 + 54597 24315 36118 36139 53425 53425 -0.18954495322554976 YGDCVLSY 8 Unmodified _YGDCVLSY_ 0 0 0 REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2362365722656 2 460.196936 918.379319 NaN NaN NaN NaN NaN NaN NaN 18.839 1 17.528 17.028 18.028 -1.3109 0 0 0 0.21452 1 3081 3081 13.508 0 1 + 54598 16831 36119 36140 53426 53426 -0.08313518407931042 YGDIKDVRL 9 Unmodified _YGDIKDVRL_ 0 0 0 nc|ENSG00000059122|Q4VC44-5|FLYWCH1;ENST00000570752.5_1_16:2986460-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-4|FLYWCH1;ENST00000574985.1_1_16:2986529-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2013854980469 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 86.737 1 86.737 86.237 87.237 0 0 0 0 0.23508 1 16926 16926 11.518 0.61892 1 54599 1296 36120 36141 53427 53427 0.046171279889904326 YGDIKDVRL 9 Unmodified _YGDIKDVRL_ 0 0 0 nc|ENSG00000059122|Q4VC44-5|FLYWCH1;ENST00000570752.5_1_16:2986460-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-4|FLYWCH1;ENST00000574985.1_1_16:2986529-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21661376953125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 86.945 1 86.945 86.445 87.445 0 0 0 0 0.23508 1 16969 16969 5.0475 1.9753 1 54600 1296 36120 36141 53428 53428 0.046171279889904326 YGDIKDVRL 9 Unmodified _YGDIKDVRL_ 0 0 0 nc|ENSG00000059122|Q4VC44-5|FLYWCH1;ENST00000570752.5_1_16:2986460-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-4|FLYWCH1;ENST00000574985.1_1_16:2986529-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2016906738281 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 90.308 1 86.448 85.948 86.948 -3.8595 0 0 0 0.23508 1 17668 17668 7.9454 1.315 1 54601 1296 36120 36141 53429 53429 0.046171279889904326 YGDIKDVRL 9 Unmodified _YGDIKDVRL_ 0 0 0 nc|ENSG00000059122|Q4VC44-5|FLYWCH1;ENST00000570752.5_1_16:2986460-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-4|FLYWCH1;ENST00000574985.1_1_16:2986529-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2168884277344 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 90.453 1 86.594 86.094 87.094 -3.8595 0 0 0 0.23508 1 17695 17695 7.9454 1.7536 1 54602 1296 36120 36141 53430 53430 0.046171279889904326 YGDIKDVRL 9 Unmodified _YGDIKDVRL_ 0 0 0 nc|ENSG00000059122|Q4VC44-5|FLYWCH1;ENST00000570752.5_1_16:2986460-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-4|FLYWCH1;ENST00000574985.1_1_16:2986529-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2013244628906 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 90.588 1 86.729 86.229 87.229 -3.8595 0 0 0 0.23508 1 17723 17723 10.899 3.7972 1 54603 1296 36120 36141 53431 53431 0.046171279889904326 YGDIKDVRL 9 Unmodified _YGDIKDVRL_ 0 0 0 nc|ENSG00000059122|Q4VC44-5|FLYWCH1;ENST00000570752.5_1_16:2986460-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-4|FLYWCH1;ENST00000574985.1_1_16:2986529-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2015380859375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 90.598 1 86.554 86.054 87.054 -4.0443 0 0 0 0.23508 1 17258 17258 11.518 0.61892 1 54604 1296 36120 36141 53432 53432 0.046171279889904326 YGDIKDVRL 9 Unmodified _YGDIKDVRL_ 0 0 0 nc|ENSG00000059122|Q4VC44-5|FLYWCH1;ENST00000570752.5_1_16:2986460-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-4|FLYWCH1;ENST00000574985.1_1_16:2986529-2998725:+|nuORF;nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 nc|ENSG00000059122|Q4VC44-5|FLYWCH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20159912109375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 90.311 1 86.533 86.033 87.033 -3.7779 0 0 0 0.23508 1 17282 17282 11.518 4.4162 1 54605 1296 36120 36141 53433 53433 0.046171279889904326 YGEKDNLRA 9 Unmodified _YGEKDNLRA_ 0 0 0 REV__nc|ENSG00000143514|Q13625-2|TP53BP2 REV__nc|ENSG00000143514|Q13625-2|TP53BP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2705078125 2 533.269813 1064.52507 0.10724 5.7188E-05 0.071372 3.806E-05 0.17861 9.5248E-05 533.26965448556 33.228 0.48503 33.228 32.954 33.439 0 22 13 2 0 0 0 0.35556 1 6022 6022 19.626 0 1 1948900 + 54606 16735 36121 36142 53434 53434 -0.004609195675357114 YGELGQSRMY 10 Unmodified _YGELGQSRMY_ 0 0 0 MTMR10|p.L761*|1|0.4|ENSG00000166912|chr15:30941522-30941522|A/-|frameshift_variant;ENSG00000166912|ENST00000435680|MTMR10;ENST00000566338.5_1_15:31233675-31240771:-|nuORF;ENST00000567567.5_1_15:31233675-31258111:-|nuORF MTMR10|p.L761*|1|0.4|ENSG00000166912|chr15:30941522-30941522|A/-|frameshift_variant MTMR10|p.L761*|1|0.4|ENSG00000166912|chr15:30941522-30941522|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2789916992188 2 602.27678 1202.53901 0.39438 0.00023752 0.5346 0.00032198 0.92898 0.0005595 602.2772314219422 81.959 0.37084 78.12 77.927 78.298 -3.8392 13 10 3 0 0 0 0.71097 1 15548 15548 10.074 0.6908 1 1397200 54607 5764 36122 36143 53435 53435 -0.05416010130716131 YGEYDYDDGY 10 Unmodified _YGEYDYDDGY_ 0 0 0 ENSG00000131773|ENST00000355849|KHDRBS3;ENST00000522079.5_1_8:136569738-136660819:+|nuORF ENSG00000131773|ENST00000355849|KHDRBS3 ENSG00000131773|ENST00000355849|KHDRBS3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7514038085938 2 630.222391 1258.43023 1.2468 0.00078573 2.7225 0.0017157 3.9692 0.0025015 630.7264830447976 119.21 0.18203 114.71 114.57 114.75 -4.502 6 4 2 0 0 0 0.91149 1 23507 23507 1.8442 0 1 1676100 54608 3693 36123 36144 53436 53436 -0.18864942620052716 YGGALAGA 8 Unmodified _YGGALAGA_ 0 0 0 ENST00000472734.1_1_1:211433019-211434404:+|nuORF ENST00000472734.1_1_1:211433019-211434404:+|nuORF ENST00000472734.1_1_1:211433019-211434404:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 340.1757507324219 2 340.174121 678.33369 NaN NaN NaN NaN NaN NaN NaN 98.027 1 94.076 93.576 94.576 -3.951 0 0 0 0.21486 1 18814 18814 2.8892 0 1 54609 10230 36124 36145 53437 53437 -0.01834375807993638 YGGCAGPH 8 Unmodified _YGGCAGPH_ 0 0 0 REV__SRI|p.G10C|1|0.59|ENSG00000075142|chr7:88219999-88219999|C/A|missense_variant REV__SRI|p.G10C|1|0.59|ENSG00000075142|chr7:88219999-88219999|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 380.90521240234375 2 381.155406 760.296258 NaN NaN NaN NaN NaN NaN NaN 70.72 1 67.471 66.971 67.971 -3.2492 0 0 0 0.23711 1 13767 13767 0.12286 0 1 + 54610 24735 36125 36146 53438 53438 -0.09347790345259455 YGGGGQYFA 9 Unmodified _YGGGGQYFA_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000432375.1_1_6:32293532-32293889:+|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23846435546875 2 460.200867 918.387182 NaN NaN NaN NaN NaN NaN NaN 76.006 1 72.283 71.783 72.783 -3.7227 0 0 0 0.1924 1 14384 14384 24.674 5.4169 1 54611 3929 36126 36147 53439 53439 -0.07527623096154912 YGGGGQYFA 9 Unmodified _YGGGGQYFA_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000432375.1_1_6:32293532-32293889:+|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.22930908203125 2 460.200867 918.387182 NaN NaN NaN NaN NaN NaN NaN 76.082 1 72.359 71.859 72.859 -3.7227 0 0 0 0.23508 1 14400 14400 12.532 0 1 54612 3929 36126 36147 53440 53440 -0.07527623096154912 YGGVVFGG 8 Unmodified _YGGVVFGG_ 0 0 0 AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 378.1894836425781 2 378.189771 754.36499 NaN NaN NaN NaN NaN NaN NaN 66.954 1 66.954 66.454 67.454 0 0 0 0 0.23664 1 12938 12938 3.2813 0 1 54613 190 36127 36148 53441 53441 -0.02201802773890904 YGGYFRHG 8 Unmodified _YGGYFRHG_ 0 0 0 tr|U7SNC2|U7SNC2_FUSNUS-adenosylmethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metKPE=3SV=1 tr|U7SNC2|U7SNC2_FUSNUS-adenosylmethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metKPE=3SV=1 tr|U7SNC2|U7SNC2_FUSNUS-adenosylmethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metKPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7330322265625 2 478.722301 955.43005 NaN NaN NaN NaN NaN NaN NaN 13.059 1 11.929 11.429 12.429 -1.1293 0 0 0 0.2396 1 1659 1659 0 0 1 54614 26020 36128 36149 53442 53442 -0.04944808248046684 YGHYGFVD 8 Unmodified _YGHYGFVD_ 0 0 0 REV__nc|ENSG00000142230|Q9UBE0-2|SAE1 REV__nc|ENSG00000142230|Q9UBE0-2|SAE1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72607421875 2 479.208692 956.402832 NaN NaN NaN NaN NaN NaN NaN 55.551 1 52.667 52.167 53.167 -2.8837 0 0 0 0.23749 1 10633 10633 0.12286 0.11459 1 + 54615 16661 36129 36150 53443 53443 -0.07711336579086492 YGIFSHTH 8 Unmodified _YGIFSHTH_ 0 0 0 nc|ENSG00000135114|Q15646-3|OASL;ENSG00000135114|ENST00000257570|OASL nc|ENSG00000135114|Q15646-3|OASL nc|ENSG00000135114|Q15646-3|OASL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2404479980469 2 481.229959 960.445365 NaN NaN NaN NaN NaN NaN NaN 92.076 1 87.981 87.481 88.481 -4.0946 0 0 0 0.23366 1 17539 17539 0.12286 0 1 54616 3903 36130 36151 53444 53444 -0.03643941450854982 YGIPAIVKLL 10 Unmodified _YGIPAIVKLL_ 0 0 0 ENSG00000173801|ENST00000393931|JUP;ENST00000585793.1_1_17:39914605-39919321:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7821044921875 2 543.84971 1085.68487 NaN NaN NaN NaN NaN NaN NaN 9.1257 1 9.1257 8.6257 9.6257 0 0 0 0 2.8426 1 1023 1023 0.0013812 0 1 54617 6310 36131 36152 53445 53445 0.14545240447637298 YGKACLLLY 9 Unmodified _YGKACLLLY_ 0 0 0 ENST00000515481.5_1_5:179043097-179043181:-|nuORF ENST00000515481.5_1_5:179043097-179043181:-|nuORF ENST00000515481.5_1_5:179043097-179043181:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2772827148438 2 522.283346 1042.55214 NaN NaN NaN NaN NaN NaN NaN 93.793 1 89.949 89.449 90.449 -3.844 0 0 0 0.23508 1 17985 17985 8.5933 0.68312 1 54618 10788 36132 36153 53446 53446 0.03256472719317571 YGKAFMQFT 9 Unmodified _YGKAFMQFT_ 0 0 0 REV__SLC12A2|p.A637T|1|0.04|ENSG00000064651|chr5:128148781-128148781|G/A|missense_variant REV__SLC12A2|p.A637T|1|0.04|ENSG00000064651|chr5:128148781-128148781|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7667236328125 2 546.762778 1091.511 0.014197 7.7625E-06 1.0877 0.00059474 1.1019 0.0006025 546.7640218162805 51.071 0.66582 48.019 47.677 48.343 -3.0517 53 18 4 0 0 0 0.5059 1 9441 9441 19.257 2.1441 1 4788900 + 54619 24623 36133 36154 53447 53447 -0.03109288320183623 YGKPPFYSK 9 Unmodified _YGKPPFYSK_ 0 0 0 REV__nc|ENSG00000137449|Q7Z5Q1-7|CPEB2 REV__nc|ENSG00000137449|Q7Z5Q1-7|CPEB2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7832641601562 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 52.882 1 49.787 49.287 50.287 -3.0954 0 0 0 0.19638 1 9770 9770 0.40827 0 1 + 54620 13569 36134 36155 53448 53448 0.01522644448596111 YGKQAVLC 8 Unmodified _YGKQAVLC_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 441.231689453125 2 441.231113 880.447674 NaN NaN NaN NaN NaN NaN NaN 29.593 1 27.519 27.019 28.019 -2.0743 0 0 0 0.23899 1 5036 5036 1.3295 0 1 54621 1369 36135 36156 53449 53449 0.0026677096259390964 YGLDYVHNL 9 Unmodified _YGLDYVHNL_ 0 0 0 ENSG00000212907|ENST00000361335|MT-ND4L ENSG00000212907|ENST00000361335|MT-ND4L ENSG00000212907|ENST00000361335|MT-ND4L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7686767578125 2 547.269281 1092.52401 0.32607 0.00017845 -1.0901 -0.00059655 -0.76399 -0.00041811 547.2702332071649 123.15 0.14078 123.15 123.1 123.24 0 5 3 2 0 0 0 0.5685 1 24283 24283 15.248 1.3424 1 1400700 54622 7681 36136 36157 53450 53450 -0.018551339364194064 YGLDYVHNL 9 Unmodified _YGLDYVHNL_ 0 0 0 ENSG00000212907|ENST00000361335|MT-ND4L ENSG00000212907|ENST00000361335|MT-ND4L ENSG00000212907|ENST00000361335|MT-ND4L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7721557617188 2 547.269281 1092.52401 0.25931 0.00014191 0.1182 6.4686E-05 0.37751 0.0002066 547.7710864822216 127.91 0.4912 123.29 122.92 123.41 -4.6172 20 13 2 0 0 0 0.07738 2 25233 25184;25233 62.573 33.491 1 2255800 54623 7681 36136 36157 53451;53452 53452 -0.018551339364194064 YGLKDLEEV 9 Unmodified _YGLKDLEEV_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;EIF2AK4|p.K1289T|1|0.34|ENSG00000128829|chr15:40016608-40016608|A/C|missense_variant nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2767944335938 2 533.276772 1064.53899 0.16052 8.5603E-05 -0.93922 -0.00050086 -0.77869 -0.00041526 533.2766696431308 73.713 0.94458 73.713 73.415 74.36 0 78 26 5 0 0 0 0.15214 2 14315 14273;14315 43.858 13.222 1 5584700 54624 3543 36137 36158 53453;53454 53454 0.009303131408842091 YGLRSREW 8 Unmodified _YGLRSREW_ 0 0 0 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.280517578125 2 533.775065 1065.53558 0.076451 4.0807E-05 -0.66308 -0.00035394 -0.58663 -0.00031313 533.7747127905495 77.297 0.81627 73.834 73.719 74.535 -3.4633 35 22 2 0 0 0 0.83439 1 15148 15148 14.582 7.9513 1 2332200 + 54625 14084 36138 36159 53455 53455 0.005431078775700371 YGLRSREW 8 Unmodified _YGLRSREW_ 0 0 0 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2769775390625 2 533.775065 1065.53558 0.37964 0.00020264 -0.96903 -0.00051725 -0.58939 -0.0003146 533.77464247443 77.625 0.98322 73.858 73.542 74.525 -3.7664 45 27 2 0 0 0 0.83439 1 14714 14714 14.582 0 1 3292400 + 54626 14084 36138 36159 53456 53456 0.005431078775700371 YGLSGPAASRS 11 Unmodified _YGLSGPAASRS_ 0 0 0 REV__ENST00000575854.5_1_16:3724861-3727653:-|nuORF REV__ENST00000575854.5_1_16:3724861-3727653:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2705078125 2 533.269813 1064.52507 0.10724 5.7188E-05 0.071372 3.806E-05 0.17861 9.5248E-05 533.26965448556 33.228 0.48503 33.228 32.954 33.439 0 22 13 2 0 0 0 0.64855 1 6024 6024 15.248 2.206 1 1948900 + 54627 15860 36139 36160 53457 53457 -0.004609195675584488 YGLSGPAASRS 11 Unmodified _YGLSGPAASRS_ 0 0 0 REV__ENST00000575854.5_1_16:3724861-3727653:-|nuORF REV__ENST00000575854.5_1_16:3724861-3727653:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2691650390625 2 533.269813 1064.52507 0.37186 0.0001983 -0.07034 -3.751E-05 0.30152 0.00016079 533.2696417282177 35.472 0.52522 33.195 32.895 33.42 -2.2766 28 14 3 0 0 0 0.57511 1 6199 6199 19.362 3.2128 1 1266500 + 54628 15860 36139 36160 53458 53458 -0.004609195675584488 YGMEILVH 8 Unmodified _YGMEILVH_ 0 0 0 REV__nc|ENSG00000095627|Q9BXT4-4|TDRD1 REV__nc|ENSG00000095627|Q9BXT4-4|TDRD1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.24505615234375 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 150.54 1 145.42 144.92 145.92 -5.1204 0 0 0 0.23749 1 29174 29174 0.12286 0 1 + 54629 14613 36140 36161 53459 53459 -0.007929598659302428 YGPNCHCSY 9 Unmodified _YGPNCHCSY_ 0 0 0 REV__nc|ENSG00000168056|Q9NS15-2|LTBP3 REV__nc|ENSG00000168056|Q9NS15-2|LTBP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.280029296875 2 522.189119 1042.36369 NaN NaN NaN NaN NaN NaN NaN 49.188 1 49.188 48.688 49.688 0 0 0 0 0.23508 1 9296 9296 4.756 1.8668 1 + 54630 17993 36141 36162 53460 53460 -0.15580128196620535 YGPNTKMVR 9 Unmodified _YGPNTKMVR_ 0 0 0 nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;nc|ENSG00000119139|Q9UDY2-5|TJP2 nc|ENSG00000119139|Q9UDY2-4|TJP2 nc|ENSG00000119139|Q9UDY2-4|TJP2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.275634765625 2 533.279126 1064.5437 NaN NaN NaN NaN NaN NaN NaN 176.12 1 171.33 170.83 171.83 -4.7898 0 0 0 0.23508 1 36010 36010 3.5965 0.70727 1 54631 3061 36142 36163 53461 53461 0.014009188026875563 YGPTESVKV 9 Unmodified _YGPTESVKV_ 0 0 0 nc|ENSG00000174740|Q96DU9-2|PABPC5;ENSG00000174740|ENST00000312600|PABPC5 nc|ENSG00000174740|Q96DU9-2|PABPC5 nc|ENSG00000174740|Q96DU9-2|PABPC5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2631530761719 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 55.477 1 55.477 54.977 55.977 0 0 0 0 0.21848 1 10593 10593 18.135 2.2878 1 54632 6366 36143 36164 53462 53462 0.012100613149982564 YGPTESVKV 9 Unmodified _YGPTESVKV_ 0 0 0 nc|ENSG00000174740|Q96DU9-2|PABPC5;ENSG00000174740|ENST00000312600|PABPC5 nc|ENSG00000174740|Q96DU9-2|PABPC5 nc|ENSG00000174740|Q96DU9-2|PABPC5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.27288818359375 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 58.605 1 55.695 55.195 56.195 -2.9105 0 0 0 0.21848 1 11258 11258 18.135 2.2878 1 54633 6366 36143 36164 53463 53463 0.012100613149982564 YGRAPRIP 8 Unmodified _YGRAPRIP_ 0 0 0 REV__ENST00000381870.7_1_17:3558343-3558537:+|nuORF REV__ENST00000381870.7_1_17:3558343-3558537:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.247802734375 2 465.269419 928.524284 NaN NaN NaN NaN NaN NaN NaN 151.71 1 146.96 146.46 147.46 -4.7523 0 0 0 0.21486 1 30147 30147 9.3474 0.75416 1 + 54634 21172 36144 36165 53464 53464 0.05716330574091444 YGRDIVEAHYR 11 Unmodified _YGRDIVEAHYR_ 0 0 0 ENSG00000135821|ENST00000331872|GLUL;ENST00000491322.1_1_1:182354870-182355047:-|nuORF ENSG00000135821|ENST00000331872|GLUL ENSG00000135821|ENST00000331872|GLUL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2330627441406 3 460.233592 1377.67895 NaN NaN NaN NaN NaN NaN NaN 151.2 1 151.2 150.7 151.7 0 0 0 0 0.22632 1 30278 30278 1.4551 0 1 54635 3954 36145 36166 53465 53465 0.0052149019797980145 YGSDVLFK 8 Unmodified _YGSDVLFK_ 0 0 0 REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|251|2|anti-sense REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|251|2|anti-sense MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 91.914 1 87.82 87.32 88.32 -4.0946 0 0 0 0.21486 1 17506 17506 1.6526 0 1 + 54636 23774 36146 36167 53466 53466 0.003546936318684857 YGSPTLKY 8 Unmodified _YGSPTLKY_ 0 0 0 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16448974609375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 157.08 1 152.29 151.79 152.79 -4.7885 0 0 0 0.2386 1 31238 31238 0.12286 0 1 + 54637 18402 36147 36168 53467 53467 0.003546936318684857 YGSRVEAVY 9 Unmodified _YGSRVEAVY_ 0 0 0 nc|ENSG00000117115|Q9Y2J8-2|PADI2;ENSG00000117115|ENST00000375486|PADI2 nc|ENSG00000117115|Q9Y2J8-2|PADI2 nc|ENSG00000117115|Q9Y2J8-2|PADI2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2615356445312 2 522.261456 1042.50836 0.16719 8.7317E-05 -0.015294 -7.9875E-06 0.1519 7.933E-05 522.2614050256642 59.253 0.55571 56.048 55.787 56.343 -3.2052 31 15 3 0 0 0 0.54076 1 11089 11089 17.113 0.1706 1 1194400 54638 2974 36148 36169 53468 53468 -0.011194204534604069 YGSRVEAVY 9 Unmodified _YGSRVEAVY_ 0 0 0 nc|ENSG00000117115|Q9Y2J8-2|PADI2;ENSG00000117115|ENST00000375486|PADI2 nc|ENSG00000117115|Q9Y2J8-2|PADI2 nc|ENSG00000117115|Q9Y2J8-2|PADI2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 522.261456 1042.50836 -0.62837 -0.00032817 0.70656 0.00036901 0.078188 4.0835E-05 522.2617429565975 59.362 0.39312 56.048 55.816 56.209 -3.3139 -0.050894 0.00033769 NaN 17.113 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1397100 54639 2974 36148 36169 -0.011194204534604069 YGTAIPRTV 9 Unmodified _YGTAIPRTV_ 0 0 0 REV__IFT88|p.K453Rfs*5|3|0.37|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant REV__IFT88|p.K453Rfs*5|3|0.37|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2672119140625 2 489.274367 976.53418 0.13007 6.3638E-05 -0.075613 -3.6996E-05 0.054453 2.6643E-05 489.274283798858 48.186 1.0593 45.244 44.788 45.848 -2.9421 90 29 4 0 0 0 0.66537 1 8731 8731 8.5933 0 1 53783000 + 54640 14017 36149 36170 53469 53469 0.04497473788808293 YGTCSSSVQY 10 Unmodified _YGTCSSSVQY_ 0 0 0 ENSG00000213047|ENST00000620048|DENND1B ENSG00000213047|ENST00000620048|DENND1B ENSG00000213047|ENST00000620048|DENND1B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.778076171875 2 547.726589 1093.43863 NaN NaN NaN NaN NaN NaN NaN 59.079 1 59.079 58.579 59.579 0 0 0 0 0.22588 1 11315 11315 9.3831 1.473 1 54641 7685 36150 36171 53470 53470 -0.10435667184401609 YGVYAGAG 8 Unmodified _YGVYAGAG_ 0 0 0 REV__ENSG00000105509|ENST00000540069|HAS1 REV__ENSG00000105509|ENST00000540069|HAS1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 379.6809997558594 2 379.179404 756.344254 0.19297 7.3172E-05 0.75987 0.00028813 0.95284 0.0003613 379.180418735494 177.81 0.88228 172.94 172.07 172.95 -4.8686 34 24 3 0 0 0 8448 1 35354 35354 1.3295 1.3213 1 4011400 + 54642 14997 36151 36172 53471 53471 -0.043663931535661504 YGWHLQPPP 9 Unmodified _YGWHLQPPP_ 0 0 0 REV__ENST00000453168.5_1_3:31574130-31574265:+|nuORF REV__ENST00000453168.5_1_3:31574130-31574265:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7763061523438 2 547.774534 1093.53451 0.44545 0.00024401 -0.97897 -0.00053626 -0.53352 -0.00029225 547.7740681267937 38.893 3.1357 38.893 37.363 40.499 0 259 88 4 0 0 0 0.54354 1 7432 7432 16.942 16.942 1 35776000 + 54643 21824 36152 36173 53472 53472 -0.008511064913591326 YGWHLQPPP 9 Unmodified _YGWHLQPPP_ 0 0 0 REV__ENST00000453168.5_1_3:31574130-31574265:+|nuORF REV__ENST00000453168.5_1_3:31574130-31574265:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.777099609375 2 547.774534 1093.53451 -0.02239 -1.2265E-05 -0.50376 -0.00027595 -0.52615 -0.00028821 547.7743309017609 41.635 3.2915 38.984 37.107 40.398 -2.651 280 93 4 0 0 0 0.54354 1 7744 7744 16.942 16.942 1 38930000 + 54644 21824 36152 36173 53473 53473 -0.008511064913591326 YGWHLQPPP 9 Unmodified _YGWHLQPPP_ 0 0 0 REV__ENST00000453168.5_1_3:31574130-31574265:+|nuORF REV__ENST00000453168.5_1_3:31574130-31574265:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7761840820312 2 547.774534 1093.53451 0.12093 6.6241E-05 -0.6557 -0.00035918 -0.53478 -0.00029294 547.774235471764 41.545 3.0575 39.055 37.439 40.497 -2.4896 252 86 4 0 0 0 0.54354 1 7712 7712 16.942 16.942 1 31900000 + 54645 21824 36152 36173 53474 53474 -0.008511064913591326 YGWLVPPP 8 Unmodified _YGWLVPPP_ 0 0 0 REV__ENST00000367462.4_1_1:190446859-190447012:-|nuORF REV__ENST00000367462.4_1_1:190446859-190447012:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1697998046875 3 310.16909 927.485439 NaN NaN NaN NaN NaN NaN NaN 25.316 1 25.316 24.816 25.816 0 0 0 0 0.21486 1 4386 4386 4.3292 0 1 + 54646 20920 36153 36174 53475 53475 0.018796052196989876 YGYIPYAP 8 Unmodified _YGYIPYAP_ 0 0 0 REV__ENSG00000137073|ENST00000379238|UBAP2 REV__ENSG00000137073|ENST00000379238|UBAP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 315.07586669921875 3 315.15685 942.448719 NaN NaN NaN NaN NaN NaN NaN 133.39 1 128.52 128.02 129.02 -4.8726 0 0 0 0.21486 1 25626 25626 0.45834 0 1 + 54647 16372 36154 36175 53476 53476 -0.024806913968632216 YGYQLPEKPG 10 Unmodified _YGYQLPEKPG_ 0 0 0 ENST00000422154.6_1_X:102940158-102941669:-|nuORF ENST00000422154.6_1_X:102940158-102941669:-|nuORF ENST00000422154.6_1_X:102940158-102941669:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 384.1754150390625 3 384.529235 1150.56587 NaN NaN NaN NaN NaN NaN NaN 29.326 1 27.37 26.87 27.87 -1.9561 0 0 0 2.8426 1 5269 5269 0.043787 0.043223 1 54648 9678 36155 36176 53477 53477 -0.0033857824791994062 YHAAIDPVAD 10 Unmodified _YHAAIDPVAD_ 0 0 0 REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.54840087890625 3 357.841701 1070.50327 0.13639 4.8806E-05 -0.10098 -3.6135E-05 0.035409 1.2671E-05 357.84166253480566 26.219 0.38062 24.584 24.408 24.789 -1.6347 25 10 3 0 0 0 0.91051 1 4362 4362 9.544 2.8208 1 1685200 + 54649 25464 36156 36177 53478 53478 -0.02915724316108026 YHAAIDPVAD 10 Unmodified _YHAAIDPVAD_ 0 0 0 REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 357.841701 1070.50327 -0.21238 -7.5997E-05 0.11887 4.2536E-05 -0.093508 -3.3461E-05 357.8416731670873 24.648 0.47341 24.648 24.44 24.913 0 0.053055 0.00025033 NaN 9.544 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1883200 + 54650 25464 36156 36177 -0.02915724316108026 YHAAIDPVAD 10 Unmodified _YHAAIDPVAD_ 0 0 0 REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 357.841701 1070.50327 0.82768 0.00029618 -0.66991 -0.00023972 0.15777 5.6455E-05 357.84142055217495 26.391 0.47836 24.608 24.416 24.894 -1.7821 0.013538 -0.00059645 NaN 9.544 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1920600 + 54651 25464 36156 36177 -0.02915724316108026 YHAAIDPVAD 10 Unmodified _YHAAIDPVAD_ 0 0 0 REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 357.841701 1070.50327 -0.65482 -0.00023432 0.24655 8.8226E-05 -0.40827 -0.0001461 357.8418775232798 26.461 0.40759 24.539 24.368 24.776 -1.9222 -0.056006 0.0003874 NaN 9.544 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 994290 + 54652 25464 36156 36177 -0.02915724316108026 YHAYATGF 8 Unmodified _YHAYATGF_ 0 0 0 REV__ENSG00000164169|ENST00000322396|PRMT9 REV__ENSG00000164169|ENST00000322396|PRMT9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2474670410156 2 465.211235 928.407917 NaN NaN NaN NaN NaN NaN NaN 52.657 1 49.561 49.061 50.061 -3.0954 0 0 0 0.2074 1 9724 9724 19.439 6.9074 1 + 54653 17657 36157 36178 53479 53479 -0.059150327164843475 YHDFPVYNP 9 Unmodified _YHDFPVYNP_ 0 0 0 ENSG00000162738|ENST00000368061|VANGL2 ENSG00000162738|ENST00000368061|VANGL2 ENSG00000162738|ENST00000368061|VANGL2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33349609375 2 576.261456 1150.50836 -0.062372 -3.5942E-05 -0.39469 -0.00022744 -0.45706 -0.00026339 576.2611294461655 50.067 0.71012 47.06 46.599 47.309 -3.0068 27 20 2 0 0 0 0.69192 1 9184 9184 20.454 0 1 1084000 54654 5362 36158 36179 53480 53480 -0.060874204534684395 YHEAVRKV 8 Unmodified _YHEAVRKV_ 0 0 0 ENSG00000257987|ENST00000548380|TEX49 ENSG00000257987|ENST00000548380|TEX49 ENSG00000257987|ENST00000548380|TEX49 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 501.3111877441406 2 501.279983 1000.54541 0.00084599 4.2408E-07 -2.1696 -0.0010876 -2.1687 -0.0010871 501.77925133811556 136.25 0.13797 131.61 131.5 131.64 -4.6399 5 3 2 0 0 0 0.89276 1 26885 26885 0.12286 0 1 1767700 54655 7949 36159 36180 53481 53481 0.04516295882956456 YHERKFWFSNR 11 Unmodified _YHERKFWFSNR_ 0 0 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.391845703125 2 785.389116 1568.76368 NaN NaN NaN NaN NaN NaN NaN 159.43 1 159.43 158.93 159.93 0 0 0 0 0.22632 1 32011 32011 0.026206 0.025642 1 54656 5078 36160 36181 53482 53482 0.0020486073458414467 YHFPWFYIHFL 11 Unmodified _YHFPWFYIHFL_ 0 0 0 ENST00000366663.9_1_1:230974343-230974889:-|nuORF ENST00000366663.9_1_1:230974343-230974889:-|nuORF ENST00000366663.9_1_1:230974343-230974889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3897705078125 2 785.387522 1568.76049 NaN NaN NaN NaN NaN NaN NaN 61.181 1 57.811 57.311 58.311 -3.3694 0 0 0 0.22632 1 11406 11406 0.00056442 0 1 54657 9051 36161 36182 53483 53483 -0.0011378237211374653 YHFPWFYIHFL 11 Unmodified _YHFPWFYIHFL_ 0 0 0 ENST00000366663.9_1_1:230974343-230974889:-|nuORF ENST00000366663.9_1_1:230974343-230974889:-|nuORF ENST00000366663.9_1_1:230974343-230974889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3851928710938 2 785.387522 1568.76049 NaN NaN NaN NaN NaN NaN NaN 103.64 1 99.584 99.084 100.08 -4.0543 0 0 0 0.22632 1 19927 19927 0.0072825 0 1 54658 9051 36161 36182 53484 53484 -0.0011378237211374653 YHFPWFYIHFL 11 Unmodified _YHFPWFYIHFL_ 0 0 0 ENST00000366663.9_1_1:230974343-230974889:-|nuORF ENST00000366663.9_1_1:230974343-230974889:-|nuORF ENST00000366663.9_1_1:230974343-230974889:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.390869140625 2 785.387522 1568.76049 NaN NaN NaN NaN NaN NaN NaN 136.06 1 131.23 130.73 131.73 -4.8307 0 0 0 0.22632 1 26196 26196 0.00056442 0 1 54659 9051 36161 36182 53485 53485 -0.0011378237211374653 YHGYSCNCS 9 Unmodified _YHGYSCNCS_ 0 0 0 CNTNAP2|p.D990N|1|0.28|ENSG00000174469|chr7:148172436-148172436|G/A|missense_variant CNTNAP2|p.D990N|1|0.28|ENSG00000174469|chr7:148172436-148172436|G/A|missense_variant CNTNAP2|p.D990N|1|0.28|ENSG00000174469|chr7:148172436-148172436|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 345.3151550292969 3 345.121593 1032.34295 NaN NaN NaN NaN NaN NaN NaN 6.0345 1 4.9945 4.4945 5.4945 -1.04 0 0 0 0.23508 1 371 371 0.26902 0.18567 1 54660 603 36162 36183 53486 53486 -0.17192718576302468 YHIRDFEVSYI 11 Unmodified _YHIRDFEVSYI_ 0 0 0 REV__nc|ENSG00000104983|Q9Y6R9-2|CCDC61 REV__nc|ENSG00000104983|Q9Y6R9-2|CCDC61 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2414855957031 3 481.241865 1440.70376 -0.2075 -9.9858E-05 -0.066028 -3.1776E-05 -0.27353 -0.00013163 481.2418697265487 70.244 0.91811 70.244 69.814 70.732 0 37 25 2 0 0 0 0.78332 1 13631 13631 5.8681 1.7515 1 3028700 + 54661 13299 36163 36184 53487 53487 0.0010412528072265559 YHISALYVV 9 Unmodified _YHISALYVV_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1 ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000136731|Q9NYU2-2|UGGT1 ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2844848632812 2 532.792392 1063.57023 0.052021 2.7717E-05 -0.55625 -0.00029637 -0.50423 -0.00026865 532.7919892043968 132.33 0.56805 127.69 127.45 128.02 -4.6399 25 15 2 0 0 0 0.54354 1 26129 26129 16.942 0.79319 1 2080800 54662 2139;4034 36164 36185 53488 53488 0.040989309656424666 YHKEYRQR 8 Unmodified _YHKEYRQR_ 0 0 0 ENST00000600588.1_1_19:6593418-6593715:+|nuORF ENST00000600588.1_1_19:6593418-6593715:+|nuORF ENST00000600588.1_1_19:6593418-6593715:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2569580078125 2 590.304521 1178.59449 0.25489 0.00015046 -1.1151 -0.00065827 -0.86024 -0.00050781 590.3038479817365 52.983 0.45917 50.1 49.858 50.317 -2.8837 27 12 3 0 0 0 8448 1 10083 10083 3.5871 1.8448 1 4171300 54663 11703 36165 36186 53489 53489 0.012335841718822849 YHKWRIYYKKR 11 Unmodified _YHKWRIYYKKR_ 0 0 0 nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL nc|ENSG00000009950|Q9NP71-5|MLXIPL nc|ENSG00000009950|Q9NP71-5|MLXIPL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7738037109375 3 547.643927 1639.90995 NaN NaN NaN NaN NaN NaN NaN 19.408 1 17.773 17.273 18.273 -1.6351 0 0 0 0.22632 1 2927 2927 0 0 1 54664 1056 36166 36187 53490 53490 0.1155916297047952 YHKWRIYYKKR 11 Unmodified _YHKWRIYYKKR_ 0 0 0 nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL nc|ENSG00000009950|Q9NP71-5|MLXIPL nc|ENSG00000009950|Q9NP71-5|MLXIPL MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7899169921875 3 547.643927 1639.90995 NaN NaN NaN NaN NaN NaN NaN 164.27 1 159.21 158.71 159.71 -5.0648 0 0 0 0.23698 1 32022 32022 0.36667 0.36667 1 54665 1056 36166 36187 53491 53491 0.1155916297047952 YHLARSDPQ 9 Unmodified _YHLARSDPQ_ 0 0 0 REV__ENSG00000164404|ENST00000687138|GDF9 REV__ENSG00000164404|ENST00000687138|GDF9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.771484375 2 543.76998 1085.52541 NaN NaN NaN NaN NaN NaN NaN 168.64 1 163.85 163.35 164.35 -4.7898 0 0 0 0.22962 1 34106 34106 14.838 1.7958 1 + 54666 17681 36167 36188 53492 53492 -0.013934998476770488 YHLDEEETPY 10 Unmodified _YHLDEEETPY_ 0 0 0 ENST00000576949.1_1_17:7133875-7137617:-|nuORF;ENST00000572285.5_1_17:7133284-7137536:-|nuORF;DVL2|p.A601Qfs*80|1|0.48|ENSG00000004975|chr17:7226275-7226275|C/-|frameshift_variant;ENSG00000004975|ENST00000005340|DVL2 ENST00000576949.1_1_17:7133875-7137617:-|nuORF ENST00000576949.1_1_17:7133875-7137617:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 434.52264404296875 3 432.519064 1294.53536 0.11929 5.1595E-05 0.99589 0.00043074 1.1152 0.00048234 432.5211064879272 154.85 0.81438 149.57 149.15 149.96 -5.2854 100 22 6 0 0 0 0.51405 1 30034 30034 3.8763 0 1 5928000 54667 897 36168 36189 53493 53493 -0.10012401423591655 YHNENGAEVVE 11 Unmodified _YHNENGAEVVE_ 0 0 0 ENSG00000121058|ENST00000240316|COIL ENSG00000121058|ENST00000240316|COIL ENSG00000121058|ENST00000240316|COIL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7781982421875 2 630.778199 1259.54184 NaN NaN NaN NaN NaN NaN NaN 11.394 1 10.299 9.7994 10.799 -1.0942 0 0 0 0.23698 1 1348 1348 0 0 1 54668 3165 36169 36190 53494 53494 -0.0775446347226989 YHPHHDPPGRV 11 Unmodified _YHPHHDPPGRV_ 0 0 0 ENSG00000130054|ENST00000252338|NALF2 ENSG00000130054|ENST00000252338|NALF2 ENSG00000130054|ENST00000252338|NALF2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.8828430175781 3 437.882894 1310.62685 NaN NaN NaN NaN NaN NaN NaN 5.9985 1 5.9985 5.4985 6.4985 0 0 0 0 0.23698 1 396 396 0 0 1 54669 3583 36170 36191 53495 53495 -0.016036284251413235 YHPHHDPPGRV 11 Unmodified _YHPHHDPPGRV_ 0 0 0 ENSG00000130054|ENST00000252338|NALF2 ENSG00000130054|ENST00000252338|NALF2 ENSG00000130054|ENST00000252338|NALF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.8828430175781 3 437.882894 1310.62685 NaN NaN NaN NaN NaN NaN NaN 7.1917 1 6.5126 6.0126 7.0126 -0.67913 0 0 0 0.23698 1 628 628 0 0 1 54670 3583 36170 36191 53496 53496 -0.016036284251413235 YHQLPPPPP 9 Unmodified _YHQLPPPPP_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6879272460938 2 523.276909 1044.53927 0.19151 0.00010021 -0.92448 -0.00048376 -0.73297 -0.00038355 523.2747166104541 22.251 1.8427 22.251 21.46 23.303 0 161 52 5 0 0 0 0.073807 2 3767 3767;3846 63.563 6.0915 1 11910000 + 54671 17178;24395 36171 36192 53497;53498 53497 0.01877777651429824 YHQLPPPPP 9 Unmodified _YHQLPPPPP_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6856079101562 2 523.276909 1044.53927 0.19151 0.00010021 -0.92448 -0.00048376 -0.73297 -0.00038355 523.2747166104541 22.251 1.8427 22.251 21.46 23.303 0 161 52 5 0 0 0 0.091177 1 3677 3677 70.716 0.38353 1 11910000 + 54672 17178;24395 36171 36192 53499 53499 0.01877777651429824 YHQLPPPPP 9 Unmodified _YHQLPPPPP_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.67919921875 2 523.276909 1044.53927 -0.60012 -0.00031403 -0.096066 -5.0269E-05 -0.69619 -0.0003643 523.7787818289657 23.654 1.7693 22.2 21.405 23.175 -1.4535 154 50 5 0 0 0 0.029739 2 3815 3815;3855 81.864 7.4413 1 20670000 + 54673 17178;24395 36171 36192 53500;53501 53500 0.01877777651429824 YHQLPPPPP 9 Unmodified _YHQLPPPPP_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6975708007812 2 523.276909 1044.53927 -0.28883 -0.00015114 -0.20145 -0.00010542 -0.49029 -0.00025656 523.7787668913365 23.967 1.3842 22.178 21.628 23.012 -1.7886 123 39 5 0 0 0 0.073807 1 3829 3829 63.563 8.7893 1 17350000 + 54674 17178;24395 36171 36192 53502 53502 0.01877777651429824 YHQLPPPPP 9 Unmodified _YHQLPPPPP_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant REV__OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 523.276909 1044.53927 -0.28883 -0.00015114 -0.20145 -0.00010542 -0.49029 -0.00025656 523.7787668913365 23.967 1.3842 22.178 21.628 23.012 -1.7886 -0.02718 0.00040093 NaN 81.864 123 39 5 NaN NaN NaN NaN 0 NaN NaN 0 17350000 + 54675 17178;24395 36171 36192 0.01877777651429824 YHQRRHTGEM 10 Unmodified _YHQRRHTGEM_ 0 0 0 ZNF836|p.P749S|1|0.2|ENSG00000196267|chr19:52155438-52155438|G/A|missense_variant;nc|ENSG00000197608|Q6ZN19|ZNF841;ENSG00000197608|ENST00000594440|ZNF841;ENSG00000196267|ENST00000682614|ZNF836 ZNF836|p.P749S|1|0.2|ENSG00000196267|chr19:52155438-52155438|G/A|missense_variant ZNF836|p.P749S|1|0.2|ENSG00000196267|chr19:52155438-52155438|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 438.851806640625 3 438.875522 1313.60474 NaN NaN NaN NaN NaN NaN NaN 9.1955 1 9.1955 8.6955 9.6955 0 0 0 0 0.22588 1 1039 1039 0 0 1 54676 7251 36172 36193 53503 53503 -0.0395217616521677 YHRHERSHMGE 11 Unmodified _YHRHERSHMGE_ 0 0 0 ENSG00000196757|ENST00000254321|ZNF700 ENSG00000196757|ENST00000254321|ZNF700 ENSG00000196757|ENST00000254321|ZNF700 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 480.2172546386719 3 480.217948 1437.63201 NaN NaN NaN NaN NaN NaN NaN 6.9354 1 5.9206 5.4206 6.4206 -1.0148 0 0 0 0.22632 1 513 513 0 0 1 54677 7306 36173 36194 53504 53504 -0.06929692624839845 YHSNIQFLG 9 Unmodified _YHSNIQFLG_ 0 0 0 REV__ENSG00000275722|ENST00000615905|LYZL6 REV__ENSG00000275722|ENST00000615905|LYZL6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2735595703125 2 539.769448 1077.52434 0.40039 0.00021612 -0.46236 -0.00024957 -0.061971 -3.345E-05 539.7691815168158 67.39 0.90556 64.063 63.718 64.624 -3.3268 80 25 5 0 0 0 0.43219 1 12700 12700 19.257 0 1 29997000 + 54678 19937 36174 36195 53505 53505 -0.01131714216603541 YHSNIQFLG 9 Unmodified _YHSNIQFLG_ 0 0 0 REV__ENSG00000275722|ENST00000615905|LYZL6 REV__ENSG00000275722|ENST00000615905|LYZL6 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 539.769448 1077.52434 0.42137 0.00022744 -0.34144 -0.0001843 0.079927 4.3142E-05 539.7691982700823 67.588 0.84802 64.091 63.748 64.596 -3.4965 -0.037969 -7.2743E-05 NaN 19.257 58 23 4 NaN NaN NaN NaN 0 NaN NaN 0 31496000 + 54679 19937 36174 36195 -0.01131714216603541 YHYWRDRWEQF 11 Unmodified _YHYWRDRWEQF_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5;ENST00000564704.5_1_16:67289660-67296168:+|nuORF ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3837890625 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 10.449 1 10.449 9.9486 10.949 0 0 0 0 0.23698 1 1307 1307 0 0 1 54680 3947 36175 36196 53506 53506 -0.06147746990632186 YHYWRDRWEQF 11 Unmodified _YHYWRDRWEQF_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5;ENST00000564704.5_1_16:67289660-67296168:+|nuORF ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.38134765625 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 80.015 1 80.015 79.515 80.515 0 0 0 0 0.23698 1 15574 15574 0.35063 0.35063 1 54681 3947 36175 36196 53507 53507 -0.06147746990632186 YHYWRDRWEQF 11 Unmodified _YHYWRDRWEQF_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5;ENST00000564704.5_1_16:67289660-67296168:+|nuORF ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3837280273438 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 93.65 1 93.65 93.15 94.15 0 0 0 0 0.23698 1 18328 18328 0 0 1 54682 3947 36175 36196 53508 53508 -0.06147746990632186 YHYWRDRWEQF 11 Unmodified _YHYWRDRWEQF_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5;ENST00000564704.5_1_16:67289660-67296168:+|nuORF ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.3836669921875 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 139.22 1 139.22 138.72 139.72 0 0 0 0 0.23698 1 27667 27667 0 0 1 54683 3947 36175 36196 53509 53509 -0.06147746990632186 YHYWRDRWEQF 11 Unmodified _YHYWRDRWEQF_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5;ENST00000564704.5_1_16:67289660-67296168:+|nuORF ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3833618164062 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 97.807 1 93.71 93.21 94.21 -4.0978 0 0 0 0.23698 1 19198 19198 0 0 1 54684 3947 36175 36196 53510 53510 -0.06147746990632186 YHYWRDRWEQF 11 Unmodified _YHYWRDRWEQF_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5;ENST00000564704.5_1_16:67289660-67296168:+|nuORF ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 843.3839721679688 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 164.12 1 159.33 158.83 159.83 -4.7898 0 0 0 0.23698 1 32771 32771 0 0 1 54685 3947 36175 36196 53511 53511 -0.06147746990632186 YHYWRDRWEQF 11 Unmodified _YHYWRDRWEQF_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5;ENST00000564704.5_1_16:67289660-67296168:+|nuORF ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3871459960938 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 78.4 1 74.633 74.133 75.133 -3.7664 0 0 0 0.23698 1 14867 14867 0.35063 0.35063 1 54686 3947 36175 36196 53512 53512 -0.06147746990632186 YHYWRDRWEQF 11 Unmodified _YHYWRDRWEQF_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5;ENST00000564704.5_1_16:67289660-67296168:+|nuORF ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3862915039062 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 138.78 1 133.83 133.33 134.33 -4.952 0 0 0 0.23698 1 26689 26689 0.35063 0.35063 1 54687 3947 36175 36196 53513 53513 -0.06147746990632186 YHYWRDRWEQF 11 Unmodified _YHYWRDRWEQF_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5;ENST00000564704.5_1_16:67289660-67296168:+|nuORF ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 843.3865356445312 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 169.94 1 165.01 164.51 165.51 -4.9295 0 0 0 0.23698 1 33579 33579 0.30703 0 1 54688 3947 36175 36196 53514 53514 -0.06147746990632186 YHYWRDRWEQF 11 Unmodified _YHYWRDRWEQF_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5;ENST00000564704.5_1_16:67289660-67296168:+|nuORF ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3809204101562 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 87.246 1 83.517 83.017 84.017 -3.7289 0 0 0 0.23698 1 16689 16689 0.35063 0.043601 1 54689 3947 36175 36196 53515 53515 -0.06147746990632186 YHYWRDRWEQF 11 Unmodified _YHYWRDRWEQF_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5;ENST00000564704.5_1_16:67289660-67296168:+|nuORF ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 843.3829956054688 2 843.384031 1684.75351 NaN NaN NaN NaN NaN NaN NaN 163.16 1 157.98 157.48 158.48 -5.1878 0 0 0 0.23698 1 31733 31733 0 0 1 54690 3947 36175 36196 53516 53516 -0.06147746990632186 YIAKDLMKV 9 Unmodified _YIAKDLMKV_ 0 0 0 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2837524414062 2 540.809728 1079.6049 0.18215 9.8506E-05 -0.31328 -0.00016942 -0.13113 -7.0917E-05 540.8098422231866 92.562 0.42067 88.637 88.338 88.759 -3.9251 18 11 2 0 0 0 0.56124 1 18116 18116 24.882 10.3 1 1104400 54691 3066 36176 36197 53517 53517 0.06828430782093164 YIAKDLMKV 9 Unmodified _YIAKDLMKV_ 0 0 0 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.809728 1079.6049 0.3473 0.00018783 -0.161 -8.7071E-05 0.1863 0.00010075 540.8097037284922 92.589 0.30759 88.446 88.281 88.589 -4.1435 -0.095547 8.36E-05 NaN 24.882 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1395400 54692 3066 36176 36197 0.06828430782093164 YIARLVFDP 9 Unmodified _YIARLVFDP_ 0 0 0 nc|ENSG00000108773|Q92830-2|KAT2A;ENSG00000108773|ENST00000225916|KAT2A;ENST00000592310.1_1_17:40269224-40269497:-|nuORF nc|ENSG00000108773|Q92830-2|KAT2A nc|ENSG00000108773|Q92830-2|KAT2A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7727661132812 2 547.305667 1092.59678 0.38833 0.00021253 1.3076 0.00071565 1.6959 0.00092819 547.306036579066 145.58 0.1373 140.64 140.59 140.73 -4.9445 5 3 2 0 0 0 0.68435 1 28152 28152 7.2892 0.56607 1 1384700 54693 2493 36177 36198 53518 53518 0.05418619857005069 YIAVGLGG 8 Unmodified _YIAVGLGG_ 0 0 0 REV__tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1 REV__tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.212158203125 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 88.737 1 84.986 84.486 85.486 -3.7501 0 0 0 0.22722 1 16989 16989 0.68139 0 1 + 54694 25277 36178 36199 53519 53519 0.027670567772474897 YIAYRITT 8 Unmodified _YIAYRITT_ 0 0 0 REV__ENST00000434401.1_1_20:43594069-43594802:-|nuORF REV__ENST00000434401.1_1_20:43594069-43594802:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 334.1649169921875 3 334.18692 999.538931 NaN NaN NaN NaN NaN NaN NaN 98.992 1 98.992 98.492 99.492 0 0 0 0 0.21486 1 19411 19411 3.5965 0 1 + 54695 21650 36179 36200 53520 53520 0.039143579315464194 YICCKLFR 8 Unmodified _YICCKLFR_ 0 0 0 REV__ENST00000519180.1_1_5:178349154-178349586:+|nuORF REV__ENST00000519180.1_1_5:178349154-178349586:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.7000732421875 2 523.269716 1044.52488 -0.11339 -5.9334E-05 -3.1519 -0.0016493 -3.2653 -0.0017087 523.2686893863843 145.86 0.27792 141.17 140.95 141.23 -4.6868 10 7 2 0 0 0 0.71273 1 28889 28889 12.532 1.7076 1 2461600 + 54696 22615 36180 36201 53521 53521 0.004396659072654074 YICTCPFFIP 10 Unmodified _YICTCPFFIP_ 0 0 0 ENST00000371614.1_1_1:52497905-52497989:-|nuORF ENST00000371614.1_1_1:52497905-52497989:-|nuORF ENST00000371614.1_1_1:52497905-52497989:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2816162109375 2 602.282489 1202.55042 NaN NaN NaN NaN NaN NaN NaN 83.255 1 79.647 79.147 80.147 -3.6079 0 0 0 2.8426 1 16274 16274 0.063865 0.034582 1 54697 9164 36181 36202 53522 53522 -0.04274904360977416 YICVRCTV 8 Unmodified _YICVRCTV_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7374267578125 2 478.738248 955.461943 NaN NaN NaN NaN NaN NaN NaN 127.77 1 123.16 122.66 123.66 -4.6172 0 0 0 0.2343 1 25196 25196 0.12286 0 1 54698 2975 36182 36203 53523 53523 -0.01756899880774654 YIDAFTTSDF 10 Unmodified _YIDAFTTSDF_ 0 0 0 ENSG00000143971|ENST00000272342|ETAA1 ENSG00000143971|ENST00000272342|ETAA1 ENSG00000143971|ENST00000272342|ETAA1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2640380859375 2 590.263862 1178.51317 0.38736 0.00022864 -0.071048 -4.1937E-05 0.31631 0.00018671 590.2637934703781 89.739 0.82368 85.879 85.473 86.297 -3.8595 75 22 4 0 0 0 0.29353 1 17632 17632 37.974 1.4678 1 38078000 54699 4535 36183 36204 53524 53524 -0.0689458110139185 YIDAFTTSDF 10 Unmodified _YIDAFTTSDF_ 0 0 0 ENSG00000143971|ENST00000272342|ETAA1 ENSG00000143971|ENST00000272342|ETAA1 ENSG00000143971|ENST00000272342|ETAA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2636108398438 2 590.263862 1178.51317 0.20081 0.00011853 0.090393 5.3356E-05 0.29121 0.00017189 590.2638355458786 89.52 0.97909 85.742 85.313 86.293 -3.7779 87 27 4 0 0 0 0.79872 1 17231 17231 19.257 0 1 31917000 54700 4535 36183 36204 53525 53525 -0.0689458110139185 YIDDRGFRY 9 Unmodified _YIDDRGFRY_ 0 0 0 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2965698242188 2 602.790912 1203.56727 0.47532 0.00028652 0.074531 4.4926E-05 0.54985 0.00033144 602.7907645664194 74.229 0.86716 74.229 73.878 74.745 0 77 24 4 0 0 0 0.089388 1 14420 14420 75.761 56.504 1 21648000 54701 4790 36184 36205 53526 53526 -0.0263694415914415 YIDDRGFRY 9 Unmodified _YIDDRGFRY_ 0 0 0 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2920532226562 2 602.790912 1203.56727 0.33983 0.00020485 0.26817 0.00016165 0.608 0.0003665 602.7910613631698 78.309 0.87818 74.543 74.18 75.058 -3.7664 44 24 2 0 0 0 0.19359 1 14846 14846 56.177 39.235 1 21661000 54702 4790 36184 36205 53527 53527 -0.0263694415914415 YIDDTLTMV 9 Oxidation (M) _YIDDTLTM(Oxidation (M))V_ YIDDTLTM(1)V YIDDTLTM(130)V 0 0 1 nc|ENSG00000278311|Q9H3C7-2|GGNBP2;GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant;GGNBP2|p.D388Vfs*15|1|0.2|ENSG00000278311|chr17:36581474-36581475|-/GT|frameshift_variant;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2 nc|ENSG00000278311|Q9H3C7-2|GGNBP2 nc|ENSG00000278311|Q9H3C7-2|GGNBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7799072265625 2 543.754815 1085.49508 0.41895 0.00022781 -0.40937 -0.0002226 0.0095843 5.2115E-06 543.754526235198 109.59 0.89561 109.59 109.19 110.09 0 62 25 3 0 0 0 0.00011526 2 21532 21532;21573 125.62 51.202 1 12630000 54703 8042 36185 36206 53528;53529 53528 107 -0.04425039347756865 YIDDTLTMV 9 Oxidation (M) _YIDDTLTM(Oxidation (M))V_ YIDDTLTM(1)V YIDDTLTM(82)V 0 0 1 nc|ENSG00000278311|Q9H3C7-2|GGNBP2;GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant;GGNBP2|p.D388Vfs*15|1|0.2|ENSG00000278311|chr17:36581474-36581475|-/GT|frameshift_variant;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2 nc|ENSG00000278311|Q9H3C7-2|GGNBP2 nc|ENSG00000278311|Q9H3C7-2|GGNBP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7899780273438 2 543.754815 1085.49508 0.15553 8.4568E-05 -0.10224 -5.5592E-05 0.053289 2.8976E-05 543.7547087962741 114.29 0.97792 109.74 109.28 110.26 -4.555 44 27 2 0 0 0 0.054955 1 21941 21941 81.613 33.267 1 5184900 54704 8042 36185 36206 53530 53530 107 -0.04425039347756865 YIDDTLTMV 9 Oxidation (M) _YIDDTLTM(Oxidation (M))V_ YIDDTLTM(1)V YIDDTLTM(100)V 0 0 1 nc|ENSG00000278311|Q9H3C7-2|GGNBP2;GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant;GGNBP2|p.D388Vfs*15|1|0.2|ENSG00000278311|chr17:36581474-36581475|-/GT|frameshift_variant;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2 nc|ENSG00000278311|Q9H3C7-2|GGNBP2 nc|ENSG00000278311|Q9H3C7-2|GGNBP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7720336914062 2 543.754815 1085.49508 0.63288 0.00034413 -0.63338 -0.0003444 -0.00049877 -2.7121E-07 543.7544154131506 114.06 1.0088 109.75 109.3 110.31 -4.3135 61 28 3 0 0 0 0.0098628 1 21962 21962 104.8 40.563 1 9579200 54705 8042 36185 36206 53531 53531 107 -0.04425039347756865 YIDKKLIAKL 10 Unmodified _YIDKKLIAKL_ 0 0 0 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2965698242188 2 602.886824 1203.7591 0.49373 0.00029766 0.068051 4.1027E-05 0.56178 0.00033869 602.8869043404693 74.573 0.6294 74.573 74.151 74.781 0 29 17 2 0 0 0 0.91149 1 14420 14420 3.9444 0.3479 1 4565300 + 54706 18990 36186 36207 53532 53532 0.16536583539141247 YIDKKLIAKL 10 Unmodified _YIDKKLIAKL_ 0 0 0 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2920532226562 2 602.886824 1203.7591 0.33115 0.00019965 0.28496 0.0001718 0.61612 0.00037145 602.8869384498663 78.536 0.56359 74.732 74.385 74.949 -3.8048 26 15 2 0 0 0 0.91149 1 14846 14846 3.9444 2.4625 1 3644100 + 54707 18990 36186 36207 53533 53533 0.16536583539141247 YIDQEELNK 9 Unmodified _YIDQEELNK_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3169555664062 2 576.282586 1150.55062 -0.0043488 -2.5062E-06 0.99057 0.00057085 0.98622 0.00056834 576.2824302385262 42.845 0.37381 40.239 40.04 40.413 -2.606 16 10 2 0 0 0 0.48707 1 7746 7746 20.415 3.3016 1 671650 54708 1874;1620 36187 36208 53534 53534 -0.018634898357504426 YIDQEELNK 9 Unmodified _YIDQEELNK_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.282586 1150.55062 0.056912 3.2797E-05 1.1715 0.00067512 1.2284 0.00070791 576.7853305390962 43.011 0.41114 40.36 40.024 40.435 -2.651 0.060609 0.00013067 NaN 20.415 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1856300 54709 1874;1620 36187 36208 -0.018634898357504426 YIDSKFEDY 9 Unmodified _YIDSKFEDY_ 0 0 0 ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000428867.1_1_7:45797631-45798728:-|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000449219.2_1_1:224190265-224197055:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000489259.5_1_10:38674311-38691690:-|nuORF;ENST00000398921.6_1_7:45788229-45798731:-|nuORF ENST00000425198.1_1_7:35872473-35938044:+|nuORF ENST00000425198.1_1_7:35872473-35938044:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.251220703125 2 590.263862 1178.51317 0.35723 0.00021086 -0.097258 -5.7408E-05 0.25997 0.00015345 590.2637130533932 85.538 0.84614 85.538 85.049 85.895 0 71 23 4 0 0 0 0.012196 3 16736 16736;16748;16751 100.09 54.07 1 30886000 54710 3229 36188 36209 53535;53536;53537 53535 -0.06894581101369113 YIDSKFEDY 9 Unmodified _YIDSKFEDY_ 0 0 0 ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000428867.1_1_7:45797631-45798728:-|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000449219.2_1_1:224190265-224197055:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000489259.5_1_10:38674311-38691690:-|nuORF;ENST00000398921.6_1_7:45788229-45798731:-|nuORF ENST00000425198.1_1_7:35872473-35938044:+|nuORF ENST00000425198.1_1_7:35872473-35938044:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2640380859375 2 590.263862 1178.51317 0.38736 0.00022864 -0.071048 -4.1937E-05 0.31631 0.00018671 590.2637934703781 89.739 0.82368 85.879 85.473 86.297 -3.8595 75 22 4 0 0 0 0.0048421 3 17543 17502;17543;17589 114.2 52.844 1 38078000 54711 3229 36188 36209 53538;53539;53540 53539 -0.06894581101369113 YIDSKFEDY 9 Unmodified _YIDSKFEDY_ 0 0 0 ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000428867.1_1_7:45797631-45798728:-|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000449219.2_1_1:224190265-224197055:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000489259.5_1_10:38674311-38691690:-|nuORF;ENST00000398921.6_1_7:45788229-45798731:-|nuORF ENST00000425198.1_1_7:35872473-35938044:+|nuORF ENST00000425198.1_1_7:35872473-35938044:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2517700195312 2 590.263862 1178.51317 0.79042 0.00046656 -0.45916 -0.00027102 0.33126 0.00019553 590.2635198101808 89.869 0.85455 85.824 85.417 86.271 -4.0443 80 23 5 0 0 0 0.043105 2 17158 17053;17158 74.2 28.179 1 36851000 54712 3229 36188 36209 53541;53542 53542 -0.06894581101369113 YIEACCDY 8 Unmodified _YIEACCDY_ 0 0 0 REV__CHRNA2|p.D254N|1|0.32|ENSG00000120903|chr8:27463683-27463683|C/T|missense_variant REV__CHRNA2|p.D254N|1|0.32|ENSG00000120903|chr8:27463683-27463683|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2763977050781 2 490.180429 978.346305 -0.13941 -6.8338E-05 0.35234 0.00017271 0.21293 0.00010437 490.1804897608296 66.669 0.35387 66.669 66.446 66.8 0 13 9 2 0 0 0 0.98792 1 12857 12857 14.582 4.3983 1 1519700 + 54713 13429 36189 36210 53543 53543 -0.14373468522296662 YIELMKERDY 10 Unmodified _YIELMKERDY_ 0 0 0 REV__tr|U7SNJ7|U7SNJ7_FUSNUS-adenosylmethionine:tRNAribosyltransferase-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queAPE=3SV=1 REV__tr|U7SNJ7|U7SNJ7_FUSNUS-adenosylmethionine:tRNAribosyltransferase-isomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=queAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7678527832031 3 453.891956 1358.65404 NaN NaN NaN NaN NaN NaN NaN 21.388 1 19.667 19.167 20.167 -1.7211 0 0 0 0.22588 1 3342 3342 0.77653 0.078866 1 + 54714 24985 36190 36211 53544 53544 -0.010943257196004197 YIFDYDYY 8 Unmodified _YIFDYDYY_ 0 0 0 ENSG00000125970|ENST00000246194|RALY ENSG00000125970|ENST00000246194|RALY ENSG00000125970|ENST00000246194|RALY MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.711181640625 3 387.830691 1160.47024 NaN NaN NaN NaN NaN NaN NaN 46.889 1 44.048 43.548 44.548 -2.8409 0 0 0 0.21486 1 8846 8846 3.9444 0 1 54715 3408 36191 36212 53545 53545 -0.10357351158813799 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16961669921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 78.691 1 78.691 78.191 79.191 0 0 0 0 0.21486 1 15314 15314 1.6526 0 1 54716 6684 36192 36213 53546 53546 0.003546936318684857 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1602783203125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 79.627 1 79.627 79.127 80.127 0 0 0 0 0.21486 1 15496 15496 1.6526 0 1 54717 6684 36192 36213 53547 53547 0.003546936318684857 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1647644042969 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 79.77 1 79.77 79.27 80.27 0 0 0 0 0.21486 1 15523 15523 1.6526 0 1 54718 6684 36192 36213 53548 53548 0.003546936318684857 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 73.941 1 70.577 70.077 71.077 -3.3643 0 0 0 0.21486 1 14419 14419 1.6526 0 1 54719 6684 36192 36213 53549 53549 0.003546936318684857 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1654052734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 92.36 1 88.435 87.935 88.935 -3.9251 0 0 0 0.21486 1 18088 18088 1.6526 0 1 54720 6684 36192 36213 53550 53550 0.003546936318684857 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16485595703125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 92.695 1 88.77 88.27 89.27 -3.9251 0 0 0 0.21486 1 18156 18156 1.6526 0 1 54721 6684 36192 36213 53551 53551 0.003546936318684857 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 93.404 1 89.414 88.914 89.914 -3.9907 0 0 0 0.21486 1 18294 18294 1.4819 0 1 54722 6684 36192 36213 53552 53552 0.003546936318684857 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1712341308594 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 94.317 1 90.326 89.826 90.826 -3.9907 0 0 0 0.21486 1 18480 18480 1.6526 0 1 54723 6684 36192 36213 53553 53553 0.003546936318684857 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1704406738281 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 109.03 1 104.66 104.16 105.16 -4.3776 0 0 0 0.21486 1 21488 21488 1.6526 0 1 54724 6684 36192 36213 53554 53554 0.003546936318684857 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 130.68 1 126.04 125.54 126.54 -4.6359 0 0 0 0.21486 1 25751 25751 1.6526 0 1 54725 6684 36192 36213 53555 53555 0.003546936318684857 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646728515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 128.14 1 123.32 122.82 123.82 -4.817 0 0 0 0.21486 1 24598 24598 0.40072 0 1 54726 6684 36192 36213 53556 53556 0.003546936318684857 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.17230224609375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 128.17 1 123.35 122.85 123.85 -4.817 0 0 0 0.21486 1 24606 24606 0.40072 0 1 54727 6684 36192 36213 53557 53557 0.003546936318684857 YIFNVSSV 8 Unmodified _YIFNVSSV_ 0 0 0 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant;nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2 SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant SSTR2|p.M282V|1|0.25|ENSG00000180616|chr17:73170163-73170163|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 83.402 1 79.703 79.203 80.203 -3.6985 0 0 0 0.21486 1 15919 15919 1.6526 0 1 54728 6684 36192 36213 53558 53558 0.003546936318684857 YIFPGILIIL 10 Unmodified _YIFPGILIIL_ 0 0 0 REV__ENSG00000178828|ENST00000375121|RNF186 REV__ENSG00000178828|ENST00000375121|RNF186 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.9122619628906 3 387.914249 1160.72092 NaN NaN NaN NaN NaN NaN NaN 10.092 1 9.2977 8.7977 9.7977 -0.79424 0 0 0 0.22588 1 1229 1229 0 0 1 + 54729 18624 36193 36214 53559 53559 0.1469869762449889 YIFQLSSL 8 Unmodified _YIFQLSSL_ 0 0 0 TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1 TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 324.1800231933594 3 324.179654 969.517133 NaN NaN NaN NaN NaN NaN NaN 69.663 1 66.483 65.983 66.983 -3.1796 0 0 0 0.21486 1 13546 13546 1.6526 0 1 54730 5461 36194 36215 53560 53560 0.031155531829995198 YIFRLAAKN 9 Unmodified _YIFRLAAKN_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7855224609375 2 548.319109 1094.62366 0.38899 0.00021329 -0.69078 -0.00037877 -0.30179 -0.00016548 548.318059226956 145.97 0.21213 140.97 140.88 141.09 -5 6 5 2 0 0 0 0.79204 1 28227 28227 16.942 3.4344 1 1118400 54731 4448 36195 36216 53561 53561 0.0801372846817685 YIGFVILH 8 Unmodified _YIGFVILH_ 0 0 0 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2418518066406 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 176.5 1 176.5 176 177 0 0 0 0 0.23711 1 36565 36565 0.12286 0 1 54732 26195 36196 36217 53562 53562 0.06143867145146942 YIGFVILH 8 Unmodified _YIGFVILH_ 0 0 0 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2418518066406 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 176.52 1 176.52 176.02 177.02 0 0 0 0 0.21486 1 36568 36568 2.8892 0 1 54733 26195 36196 36217 53563 53563 0.06143867145146942 YIGFVILH 8 Unmodified _YIGFVILH_ 0 0 0 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2417907714844 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 177 1 177 176.5 177.5 0 0 0 0 0.2396 1 36666 36666 0.12286 0 1 54734 26195 36196 36217 53564 53564 0.06143867145146942 YIGFVILH 8 Unmodified _YIGFVILH_ 0 0 0 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2417907714844 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 177.01 1 177.01 176.51 177.51 0 0 0 0 0.21486 1 36668 36668 0.79363 0 1 54735 26195 36196 36217 53565 53565 0.06143867145146942 YIGKRPAI 8 Unmodified _YIGKRPAI_ 0 0 0 REV__ENSG00000102924|ENST00000219197|CBLN1 REV__ENSG00000102924|ENST00000219197|CBLN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 459.24420166015625 2 459.281995 916.549437 NaN NaN NaN NaN NaN NaN NaN 122.72 1 117.99 117.49 118.49 -4.731 0 0 0 0.22934 1 23571 23571 1.7423 0 1 + 54736 14856 36197 36218 53566 53566 0.08782385376639468 YIGWDKHY 8 Unmodified _YIGWDKHY_ 0 0 0 ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4 ENST00000557929.5_1_15:78834269-78838932:+|nuORF ENST00000557929.5_1_15:78834269-78838932:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2817993164062 2 541.258717 1080.50288 NaN NaN NaN NaN NaN NaN NaN 122.61 1 117.88 117.38 118.38 -4.731 0 0 0 0.21486 1 23548 23548 11.114 1.767 1 54737 1195 36198 36219 53567 53567 -0.03415099245307829 YIHDLLKY 8 Unmodified _YIHDLLKY_ 0 0 0 ENST00000463735.1_1_1:161123865-161127131:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1;ENST00000482672.1_1_1:161127020-161127131:+|nuORF ENST00000463735.1_1_1:161123865-161127131:+|nuORF ENST00000463735.1_1_1:161123865-161127131:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2642822265625 2 532.792392 1063.57023 NaN NaN NaN NaN NaN NaN NaN 60.616 1 57.683 57.183 58.183 -2.9333 0 0 0 0.21486 1 11668 11668 9.3474 0.60203 1 54738 4464 36199 36220 53568 53568 0.04098930965665204 YIHKDSEWYNL 11 Unmodified _YIHKDSEWYNL_ 0 0 0 MARVELD2|p.P430Qfs*9|1|0.14|ENSG00000152939|chr5:69432628-69432628|C/-|frameshift_variant;nc|ENSG00000152939|Q8N4S9-2|MARVELD2;MARVELD2|p.E527Rfs*4|1|0.32|ENSG00000152939|chr5:69441547-69441548|-/A|frameshift_variant;MARVELD2|p.E527Nfs*6|2|0.3|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant;nc|ENSG00000152939|Q8N4S9-3|MARVELD2;ENSG00000152939|ENST00000325631|MARVELD2 MARVELD2|p.P430Qfs*9|1|0.14|ENSG00000152939|chr5:69432628-69432628|C/-|frameshift_variant MARVELD2|p.P430Qfs*9|1|0.14|ENSG00000152939|chr5:69432628-69432628|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2737731933594 3 489.90162 1466.68303 -0.11413 -5.5912E-05 1.621 0.00079412 1.5068 0.00073821 489.9023974326057 59.451 0.22016 59.451 59.321 59.541 0 6 5 2 0 0 0 0.96187 1 11395 11395 3.0723 0 1 536120 54739 4946 36200 36221 53569 53569 -0.031644650989392176 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16998291015625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 15.518 1 15.518 15.018 16.018 0 0 0 0 0.21486 1 2366 2366 0.45834 0 1 54740 6436 36201 36222 53570 53570 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2309265136719 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 23.861 1 23.861 23.361 24.361 0 0 0 0 0.21486 1 4088 4088 0.45834 0 1 54741 6436 36201 36222 53571 53571 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2376403808594 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 28.559 1 28.559 28.059 29.059 0 0 0 0 0.21486 1 5076 5076 0.45834 0 1 54742 6436 36201 36222 53572 53572 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1701354980469 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 49.236 1 49.236 48.736 49.736 0 0 0 0 0.21486 1 9306 9306 0.45834 0 1 54743 6436 36201 36222 53573 53573 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.164794921875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 63.728 1 63.728 63.228 64.228 0 0 0 0 0.21486 1 12258 12258 0.45834 0 1 54744 6436 36201 36222 53574 53574 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16436767578125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 66.778 1 66.778 66.278 67.278 0 0 0 0 0.21486 1 12901 12901 0.45834 0 1 54745 6436 36201 36222 53575 53575 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2221374511719 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 67.522 1 67.522 67.022 68.022 0 0 0 0 0.21486 1 13054 13054 0.45834 0 1 54746 6436 36201 36222 53576 53576 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16497802734375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 71.642 1 71.642 71.142 72.142 0 0 0 0 0.21486 1 13880 13880 0.45834 0 1 54747 6436 36201 36222 53577 53577 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2377624511719 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 79.587 1 79.587 79.087 80.087 0 0 0 0 0.21486 1 15487 15487 0.45834 0 1 54748 6436 36201 36222 53578 53578 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.22186279296875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 80.961 1 80.961 80.461 81.461 0 0 0 0 0.21486 1 15763 15763 0.45834 0 1 54749 6436 36201 36222 53579 53579 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.2221984863281 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 107.03 1 107.03 106.53 107.53 0 0 0 0 0.21486 1 21045 21045 0.45834 0 1 54750 6436 36201 36222 53580 53580 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1656799316406 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 14.347 1 13.232 12.732 13.732 -1.1142 0 0 0 0.21486 1 2145 2145 0.45834 0 1 54751 6436 36201 36222 53581 53581 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2129821777344 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 24.199 1 22.646 22.146 23.146 -1.5532 0 0 0 0.21486 1 4206 4206 0.45834 0 1 54752 6436 36201 36222 53582 53582 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.23040771484375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 32.252 1 30.021 29.521 30.521 -2.2305 0 0 0 0.21486 1 5874 5874 0.45834 0 1 54753 6436 36201 36222 53583 53583 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2220153808594 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 43.803 1 41.013 40.513 41.513 -2.79 0 0 0 0.21486 1 8217 8217 0.45834 0 1 54754 6436 36201 36222 53584 53584 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2222595214844 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 58.081 1 55.171 54.671 55.671 -2.9105 0 0 0 0.21486 1 11151 11151 0.45834 0 1 54755 6436 36201 36222 53585 53585 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2119140625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 58.989 1 56.079 55.579 56.579 -2.9105 0 0 0 0.21486 1 11333 11333 0.45834 0 1 54756 6436 36201 36222 53586 53586 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2008972167969 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 62.291 1 59.329 58.829 59.829 -2.9614 0 0 0 0.21486 1 12018 12018 0.45834 0 1 54757 6436 36201 36222 53587 53587 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.222412109375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 69.764 1 66.585 66.085 67.085 -3.1796 0 0 0 0.21486 1 13568 13568 0.45834 0 1 54758 6436 36201 36222 53588 53588 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.23101806640625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 71.317 1 68.068 67.568 68.568 -3.2492 0 0 0 0.21486 1 13883 13883 0.45834 0 1 54759 6436 36201 36222 53589 53589 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2220153808594 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 82.639 1 79.031 78.531 79.531 -3.6079 0 0 0 0.21486 1 16149 16149 0.45834 0 1 54760 6436 36201 36222 53590 53590 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.20123291015625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 82.668 1 79.06 78.56 79.56 -3.6079 0 0 0 0.21486 1 16155 16155 0.45834 0 1 54761 6436 36201 36222 53591 53591 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2375793457031 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 105.23 1 100.97 100.47 101.47 -4.2638 0 0 0 0.21486 1 20706 20706 0.45834 0 1 54762 6436 36201 36222 53592 53592 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.23828125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 106.63 1 102.37 101.87 102.87 -4.2638 0 0 0 0.21486 1 20990 20990 0.45834 0 1 54763 6436 36201 36222 53593 53593 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2236022949219 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 23.98 1 22.446 21.946 22.946 -1.5342 0 0 0 0.21486 1 3890 3890 0.45834 0 1 54764 6436 36201 36222 53594 53594 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1719665527344 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 24.929 1 23.395 22.895 23.895 -1.5342 0 0 0 0.21486 1 4078 4078 0.45834 0 1 54765 6436 36201 36222 53595 53595 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.20172119140625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 62.953 1 59.537 59.037 60.037 -3.4158 0 0 0 0.21486 1 11757 11757 0.45834 0 1 54766 6436 36201 36222 53596 53596 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2225036621094 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 84.447 1 80.538 80.038 81.038 -3.9093 0 0 0 0.21486 1 16052 16052 0.45834 0 1 54767 6436 36201 36222 53597 53597 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2375183105469 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 85.624 1 81.674 81.174 82.174 -3.9503 0 0 0 0.21486 1 16289 16289 0.45834 0 1 54768 6436 36201 36222 53598 53598 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.17071533203125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 94.607 1 90.416 89.916 90.916 -4.1911 0 0 0 0.21486 1 18049 18049 0.45834 0 1 54769 6436 36201 36222 53599 53599 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.2088623046875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 108.03 1 103.62 103.12 104.12 -4.4121 0 0 0 0.21486 1 20728 20728 0.45834 0 1 54770 6436 36201 36222 53600 53600 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1619567871094 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 111.67 1 107.18 106.68 107.68 -4.4915 0 0 0 0.21486 1 21434 21434 0.45834 0 1 54771 6436 36201 36222 53601 53601 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648254394531 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 131.7 1 126.85 126.35 127.35 -4.8527 0 0 0 0.21486 1 25295 25295 0.45834 0 1 54772 6436 36201 36222 53602 53602 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16485595703125 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 131.94 1 127.08 126.58 127.58 -4.8527 0 0 0 0.21486 1 25339 25339 0.45834 0 1 54773 6436 36201 36222 53603 53603 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1650085449219 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 133.21 1 128.34 127.84 128.84 -4.8726 0 0 0 0.21486 1 25591 25591 0.45834 0 1 54774 6436 36201 36222 53604 53604 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.17108154296875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 137.36 1 132.44 131.94 132.94 -4.9216 0 0 0 0.21486 1 26405 26405 0.45834 0 1 54775 6436 36201 36222 53605 53605 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1651306152344 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 137.44 1 132.52 132.02 133.02 -4.9216 0 0 0 0.21486 1 26421 26421 0.45834 0 1 54776 6436 36201 36222 53606 53606 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.17254638671875 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 20.66 1 18.939 18.439 19.439 -1.7211 0 0 0 0.21486 1 3190 3190 0.45834 0 1 54777 6436 36201 36222 53607 53607 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 21.019 1 19.298 18.798 19.798 -1.7211 0 0 0 0.21486 1 3264 3264 0.45834 0 1 54778 6436 36201 36222 53608 53608 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1606140136719 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 22.092 1 20.371 19.871 20.871 -1.7211 0 0 0 0.21486 1 3491 3491 0.45834 0 1 54779 6436 36201 36222 53609 53609 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2304382324219 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 57.397 1 54.221 53.721 54.721 -3.1761 0 0 0 0.21486 1 10699 10699 0.45834 0 1 54780 6436 36201 36222 53610 53610 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.230224609375 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 58.311 1 55.106 54.606 55.606 -3.2052 0 0 0 0.21486 1 10880 10880 0.45834 0 1 54781 6436 36201 36222 53611 53611 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1653747558594 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 64.117 1 60.86 60.36 61.36 -3.2567 0 0 0 0.21486 1 12033 12033 0.45834 0 1 54782 6436 36201 36222 53612 53612 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2229309082031 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 67.126 1 63.799 63.299 64.299 -3.3268 0 0 0 0.21486 1 12653 12653 0.45834 0 1 54783 6436 36201 36222 53613 53613 0.11265324321982462 YIIVKVPP 8 Unmodified _YIIVKVPP_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.2379150390625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 82.032 1 78.344 77.844 78.844 -3.6879 0 0 0 0.21486 1 15639 15639 0.45834 0 1 54784 6436 36201 36222 53614 53614 0.11265324321982462 YIIVYPVRE 9 Unmodified _YIIVYPVRE_ 0 0 0 REV__nc|ENSG00000009413|O60673-2|REV3L REV__nc|ENSG00000009413|O60673-2|REV3L MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.326171875 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 131.07 1 126.24 125.74 126.74 -4.8355 0 0 0 0.23508 1 25166 25166 7.2892 0 1 + 54785 13909 36202 36223 53615 53615 0.06935175545504535 YIKDGITRV 9 Unmodified _YIKDGITRV_ 0 0 0 KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A;nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-3|KIF1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.27392578125 2 532.808574 1063.60259 0.42796 0.00022802 -0.53049 -0.00028265 -0.10253 -5.4626E-05 532.8081645252703 47.861 0.38726 47.861 47.577 47.965 0 17 10 2 0 0 0 0.10782 1 9019 9019 59.368 35.579 1 1172800 54786 12218;1264;3597 36203 36224 53616 53616 0.07333718368658992 YIKDGITRV 9 Unmodified _YIKDGITRV_ 0 0 0 KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A;nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-3|KIF1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.281982421875 2 532.808574 1063.60259 -0.072038 -3.8383E-05 -0.26134 -0.00013925 -0.33338 -0.00017763 532.8083988079424 50.577 0.46205 47.695 47.395 47.857 -2.8811 22 12 3 0 0 0 0.27464 1 9612 9612 30.703 20.63 1 1477100 54787 12218;1264;3597 36203 36224 53617 53617 0.07333718368658992 YIKDGITRV 9 Unmodified _YIKDGITRV_ 0 0 0 KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A;nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-3|KIF1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.272705078125 2 532.808574 1063.60259 0.43497 0.00023175 -0.54075 -0.00028811 -0.10578 -5.636E-05 532.8083030400237 50.764 0.41497 47.719 47.53 47.945 -3.0453 20 11 2 0 0 0 0.27464 1 9316 9316 43.982 40.395 1 1901000 54788 12218;1264;3597 36203 36224 53618 53618 0.07333718368658992 YIKKLPSI 8 Unmodified _YIKKLPSI_ 0 0 0 REV__ENST00000264554.10_1_19:416804-417233:-|nuORF REV__ENST00000264554.10_1_19:416804-417233:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77996826171875 2 481.307678 960.600803 -0.00058694 -2.825E-07 0.057714 2.7778E-05 0.057127 2.7496E-05 481.3076757320442 59.524 0.55888 56.591 56.33 56.889 -2.9333 27 15 2 0 0 0 8448 1 11417 11417 0.12286 0 1 2306000 + 54789 20231 36204 36225 53619 53619 0.11892709350718178 YIKQAVDRSIW 11 Unmodified _YIKQAVDRSIW_ 0 0 0 REV__EPHA6|p.A190V|1|0.41|ENSG00000080224|chr3:96987448-96987448|C/T|missense_variant REV__EPHA6|p.A190V|1|0.41|ENSG00000080224|chr3:96987448-96987448|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 460.2401428222656 3 460.254105 1377.74048 0.20656 9.5069E-05 -0.11777 -5.4206E-05 0.088784 4.0863E-05 460.2540634905573 113.09 0.74681 113.09 112.6 113.34 0 41 21 3 0 0 0 0.63943 1 22157 22157 0.58532 0.55391 1 3360300 + 54790 23495 36205 36226 53620 53620 0.06672421897292224 YIKSKQKQE 9 Unmodified _YIKSKQKQE_ 0 0 0 REV__ENST00000370872.7_1_1:75171763-75171883:-|nuORF REV__ENST00000370872.7_1_1:75171763-75171883:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3258056640625 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 133.49 1 128.62 128.12 129.12 -4.8726 0 0 0 0.23508 1 25647 25647 10.074 2.7847 1 + 54791 20992 36206 36227 53621 53621 0.06533086051808823 YILDEFRH 8 Unmodified _YILDEFRH_ 0 0 0 REV__ENST00000397239.7_1_6:18225860-18225932:-|nuORF REV__ENST00000397239.7_1_6:18225860-18225932:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7806396484375 2 546.777274 1091.53999 -0.31444 -0.00017193 0.40219 0.00021991 0.087749 4.7979E-05 546.7774577072882 108.26 1.041 103.94 103.52 104.56 -4.32 90 29 4 0 0 0 8448 1 21384 21384 3.5871 0 1 42284000 + 54792 21298 36207 36228 53622 53622 -0.002114276995371256 YILFLHSS 8 Unmodified _YILFLHSS_ 0 0 0 REV__ENST00000472045.1_1_5:131820398-131820557:-|nuORF REV__ENST00000472045.1_1_5:131820398-131820557:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26519775390625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 68.45 1 65.059 64.559 65.559 -3.3903 0 0 0 0.17294 1 12921 12921 34.187 0 1 + 54793 22047 36208 36229 53623 53623 0.027349729028628644 YILKEKRE 8 Unmodified _YILKEKRE_ 0 0 0 tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1 tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1 tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21319580078125 3 360.213358 1077.61824 -0.47914 -0.00017259 0.25327 9.123E-05 -0.22588 -8.1364E-05 360.2134068202247 53.363 0.51989 50.479 50.283 50.803 -2.8837 23 14 2 0 0 0 0.7147 1 10148 10148 12.241 0.06591 1 846110 54794 26240 36209 36230 53624 53624 0.0825400488570267 YILKEKRE 8 Unmodified _YILKEKRE_ 0 0 0 tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1 tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1 tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 360.213358 1077.61824 -0.47914 -0.00017259 0.25327 9.123E-05 -0.22588 -8.1364E-05 360.2134068202247 53.363 0.51989 50.479 50.283 50.803 -2.8837 -0.10087 0.00014857 NaN 12.241 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 846110 54795 26240 36209 36230 0.0825400488570267 YILKRRAKLL 10 Unmodified _YILKRRAKLL_ 0 0 0 REV__ENST00000421245.2_1_X:72755416-72755509:+|nuORF REV__ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 425.24993896484375 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 158.33 1 153.54 153.04 154.04 -4.7952 0 0 0 2.8426 1 31484 31484 0.13989 0.096105 1 + 54796 21512 36210 36231 53625 53625 0.21390489652844735 YILKRRAKLL 10 Unmodified _YILKRRAKLL_ 0 0 0 REV__ENST00000421245.2_1_X:72755416-72755509:+|nuORF REV__ENST00000421245.2_1_X:72755416-72755509:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 425.2520446777344 3 425.28708 1272.83941 NaN NaN NaN NaN NaN NaN NaN 114.36 1 109.8 109.3 110.3 -4.555 0 0 0 0.22588 1 21958 21958 0.77653 0.078866 1 + 54797 21512 36210 36231 53626 53626 0.21390489652844735 YILSGSTRIL 10 Unmodified _YILSGSTRIL_ 0 0 0 REV__ENST00000466194.1_1_1:26799713-26799887:+|nuORF REV__ENST00000466194.1_1_1:26799713-26799887:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.22283935546875 3 374.888763 1121.64446 -0.89024 -0.00033374 0.66921 0.00025088 -0.22102 -8.2859E-05 374.8889839845538 80.817 1.0441 77.129 76.652 77.696 -3.6879 100 29 5 0 0 0 0.45334 1 15472 15472 27.223 0 1 19390000 + 54798 21966 36211 36232 53627 53627 0.08850274057181196 YILTFVGLLL 10 Unmodified _YILTFVGLLL_ 0 0 0 REV__tr|U7T8R7|U7T8R7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00145PE=3SV=1 REV__tr|U7T8R7|U7T8R7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00145PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3361206054688 2 576.357368 1150.70018 NaN NaN NaN NaN NaN NaN NaN 119.01 1 114.6 114.1 115.1 -4.4088 0 0 0 0.22588 1 22901 22901 3.9444 0.66309 1 + 54799 25475 36212 36233 53628 53628 0.13086107244816958 YIMLQKRAE 9 Unmodified _YIMLQKRAE_ 0 0 0 REV__nc|ENSG00000164663|Q70CQ1-2|USP49 REV__nc|ENSG00000164663|Q70CQ1-2|USP49 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3111572265625 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 153.4 1 148.13 147.63 148.63 -5.2669 0 0 0 0.23508 1 29731 29731 12.532 3.1484 1 + 54800 17700 36213 36234 53629 53629 0.047580475252971155 YINKLFKILN 10 Unmodified _YINKLFKILN_ 0 0 0 REV__tr|U7SW01|U7SW01_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01404PE=4SV=1 REV__tr|U7SW01|U7SW01_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01404PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1483154296875 4 317.195862 1264.75434 -0.10989 -3.4856E-05 0.67263 0.00021336 0.56274 0.0001785 317.1960449438669 103.13 1.1671 103.13 102.38 103.54 0 43 33 2 0 0 0 0.91149 1 20144 20144 0 0 1 2245800 + 54801 25197 36214 36235 53630 53630 0.13255699396404452 YINRIRFYKKY 11 Unmodified _YINRIRFYKKY_ 0 0 0 tr|U7T1W4|U7T1W4_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00610PE=4SV=1 tr|U7T1W4|U7T1W4_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00610PE=4SV=1 tr|U7T1W4|U7T1W4_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00610PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2676391601562 3 521.964666 1562.87217 0.1989 0.00010382 1.3604 0.0007101 1.5593 0.00081392 522.2986338891069 121.7 0.20746 121.7 121.58 121.79 0 6 5 2 0 0 0 0.96214 1 23975 23975 1.4551 0 1 2468000 54802 26331 36215 36236 53631 53631 0.11324651985023593 YIPANIQFI 9 Unmodified _YIPANIQFI_ 0 0 0 REV__nc|ENSG00000170615|P58743-2|SLC26A5 REV__nc|ENSG00000170615|P58743-2|SLC26A5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2167053222656 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 92.538 1 88.444 87.944 88.944 -4.0946 0 0 0 0.23508 1 17630 17630 4.5289 0.33936 1 + 54803 18171 36216 36237 53632 53632 0.05019217482708882 YIPCVFLGIV 10 Unmodified _YIPCVFLGIV_ 0 0 0 REV__RNF217|p.F523C|1|0.38|ENSG00000146373|chr6:125082876-125082876|T/G|missense_variant REV__RNF217|p.F523C|1|0.38|ENSG00000146373|chr6:125082876-125082876|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2118225097656 3 375.212189 1122.61474 -0.17241 -6.4691E-05 -0.20816 -7.8104E-05 -0.38057 -0.0001428 375.2120762936588 21.249 0.27546 21.249 21.087 21.362 0 12 7 2 0 0 0 0.52946 1 3536 3536 0.26539 0.23918 1 421040 + 54804 24571 36217 36238 53633 53633 0.05833618787482919 YIPLGRVRL 9 Unmodified _YIPLGRVRL_ 0 0 0 ENST00000452673.6_1_5:179156371-179156512:+|nuORF ENST00000452673.6_1_5:179156371-179156512:+|nuORF ENST00000452673.6_1_5:179156371-179156512:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7758178710938 2 543.842751 1085.67095 0.10229 5.5632E-05 0.59574 0.00032399 0.69803 0.00037962 544.34550666573 141.02 0.13536 136.04 135.93 136.06 -4.9877 5 3 2 0 0 0 0.63929 1 27141 27141 0.0033805 0 1 1339500 54805 9997 36218 36239 53634 53634 0.13154007739171902 YIQELSNL 8 Unmodified _YIQELSNL_ 0 0 0 REV__RAD17|p.S59N|1|0.24|ENSG00000152942|chr5:69373963-69373963|G/A|missense_variant REV__RAD17|p.S59N|1|0.24|ENSG00000152942|chr5:69373963-69373963|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2582702636719 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 112.06 1 112.06 111.56 112.56 0 0 0 0 0.17344 1 22044 22044 34.102 0 1 + 54806 24544 36219 36240 53635 53635 0.012100613149868877 YIQELSNL 8 Unmodified _YIQELSNL_ 0 0 0 REV__RAD17|p.S59N|1|0.24|ENSG00000152942|chr5:69373963-69373963|G/A|missense_variant REV__RAD17|p.S59N|1|0.24|ENSG00000152942|chr5:69373963-69373963|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2578125 2 490.258382 978.502212 0.21081 0.00010335 0.27233 0.00013351 0.48314 0.00023686 490.25781803439827 116.61 0.73523 112.13 111.72 112.46 -4.486 34 20 3 0 0 0 8448 1 22978 22978 11.999 0 1 1376600 + 54807 24544 36219 36240 53636 53636 0.012100613149868877 YIQPRLLSL 9 Unmodified _YIQPRLLSL_ 0 0 0 REV__ENST00000483923.5_1_10:100150731-100167745:-|nuORF REV__ENST00000483923.5_1_10:100150731-100167745:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 551.8883056640625 2 551.834591 1101.65463 0.32759 0.00018077 -2.597 -0.0014331 -2.2695 -0.0012524 551.8318490345897 157.53 0.38281 157.53 157.31 157.69 0 12 10 2 0 0 0 0.8319 1 31640 31640 1.8442 0 1 1406400 + 54808 15603 36220 36241 53637 53637 0.10786881782428281 YIRNKWYKREL 11 Unmodified _YIRNKWYKREL_ 0 0 0 REV__ENSG00000186280|ENST00000335080|KDM4D REV__ENSG00000186280|ENST00000335080|KDM4D MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.683349609375 3 523.628054 1567.86233 NaN NaN NaN NaN NaN NaN NaN 120.15 1 115.63 115.13 116.13 -4.5221 0 0 0 0.22632 1 23691 23691 0.026206 0 1 + 54809 19025 36221 36242 53638 53638 0.1011146397961511 YIRRRDYFYNY 11 Unmodified _YIRRRDYFYNY_ 0 0 0 REV__ENST00000584561.1_1_17:8109844-8110310:-|nuORF REV__ENST00000584561.1_1_17:8109844-8110310:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7807006835938 3 543.603797 1627.78956 0.36552 0.0001987 1.1033 0.00059978 1.4689 0.00079847 543.604385334402 23.844 0.3749 23.844 23.657 24.032 0 22 10 3 0 0 0 0.96224 1 4080 4080 0 0 1 1441300 + 54810 18631 36222 36243 53639 53639 0.0007771018624680437 YISETDEE 8 Unmodified _YISETDEE_ 0 0 0 RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 492.9049987792969 2 493.20347 984.392386 NaN NaN NaN NaN NaN NaN NaN 148.42 1 143.27 142.77 143.77 -5.1557 0 0 0 0.23366 1 28735 28735 0.12286 0 1 54811 1169 36223 36244 53640 53640 -0.10043408814840404 YITELRRQ 8 Unmodified _YITELRRQ_ 0 0 0 ENSG00000125730|ENST00000245907|C3;C3|p.S1008Rfs*8|3|0.41|ENSG00000125730|chr19:6694564-6694564|G/-|frameshift_variant;C3|p.A1045Pfs*26|1|0.09|ENSG00000125730|chr19:6694452-6694452|C/-|frameshift_variant ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2059326171875 3 360.204974 1077.59309 NaN NaN NaN NaN NaN NaN NaN 80.688 1 77 76.5 77.5 -3.6879 0 0 0 0.23312 1 15384 15384 1.7423 1.1154 1 54812 3379 36224 36245 53641 53641 0.0573995008314796 YITPLELM 8 Unmodified _YITPLELM_ 0 0 0 REV__ENSG00000107960|ENST00000224950|STN1 REV__ENSG00000107960|ENST00000224950|STN1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26300048828125 2 490.262079 978.509605 NaN NaN NaN NaN NaN NaN NaN 60.564 1 57.25 56.75 57.75 -3.3139 0 0 0 0.23107 1 11281 11281 1.4551 0.77368 1 + 54813 15104 36225 36246 53642 53642 0.019490775910639968 YIVDRISN 8 Unmodified _YIVDRISN_ 0 0 0 REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2647399902344 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 36.412 1 36.412 35.912 36.912 0 0 0 0 0.23312 1 6711 6711 6.2058 6.1419 1 + 54814 25024 36226 36247 53643 53643 0.02332883409144415 YIVDRIVC 8 Unmodified _YIVDRIVC_ 0 0 0 REV__STEAP4|p.F215S|1|0.14|ENSG00000127954|chr7:88282981-88282981|A/G|missense_variant REV__STEAP4|p.F215S|1|0.14|ENSG00000127954|chr7:88282981-88282981|A/G|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2761535644531 2 490.76532 979.516088 0.5205 0.00025544 -0.16255 -7.9772E-05 0.35795 0.00017567 490.76523028480443 104.09 1.0036 104.09 103.62 104.62 0 47 28 2 0 0 0 0.91917 1 20439 20439 20.454 0 1 5427000 + 54815 15907 36227 36248 53644 53644 0.02551015542451296 YIVLRKKEERE 11 Unmodified _YIVLRKKEERE_ 0 0 0 ENST00000348165.9_1_7:156931958-156961760:+|nuORF ENST00000348165.9_1_7:156931958-156961760:+|nuORF ENST00000348165.9_1_7:156931958-156961760:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 488.2449035644531 3 488.284064 1461.83036 NaN NaN NaN NaN NaN NaN NaN 98.128 1 94.171 93.671 94.671 -3.9564 0 0 0 0.22632 1 18835 18835 1.4551 1.4289 1 54816 8916 36228 36249 53645 53645 0.11792051505835843 YIVLRRRRK 9 Unmodified _YIVLRRRRK_ 0 0 0 ENST00000539420.1_1_11:113286028-113288807:-|nuORF;ENST00000540600.5_1_11:113285027-113346393:-|nuORF;nc|ENSG00000149295|P14416-2|DRD2;ENSG00000149295|ENST00000362072|DRD2;nc|ENSG00000149295|P14416-3|DRD2 ENST00000539420.1_1_11:113286028-113288807:-|nuORF ENST00000539420.1_1_11:113286028-113288807:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.75146484375 2 630.412198 1258.80984 0.44936 0.00028329 0.46141 0.00029088 0.91077 0.00057416 630.4103319323652 110.43 0.10248 110.43 110.37 110.47 0 4 2 2 0 0 0 0.87888 1 21720 21720 0.52476 0.12405 1 748540 54817 4784 36229 36250 53646 53646 0.19078970427335662 YIVNEPPP 8 Unmodified _YIVNEPPP_ 0 0 0 nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENSG00000126934|ENST00000262948|MAP2K2;ENST00000519737.1_1_8:29885889-29886273:+|nuORF;ENST00000600584.5_1_19:4095384-4099460:-|nuORF nc|ENSG00000169032|Q02750-2|MAP2K1 nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.14385986328125 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 76.836 1 76.836 76.336 77.336 0 0 0 0 0.21486 1 14931 14931 1.8442 0 1 54818 3455 36230 36251 53647 53647 0.00354693631857117 YIVNEPPP 8 Unmodified _YIVNEPPP_ 0 0 0 nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENSG00000126934|ENST00000262948|MAP2K2;ENST00000519737.1_1_8:29885889-29886273:+|nuORF;ENST00000600584.5_1_19:4095384-4099460:-|nuORF nc|ENSG00000169032|Q02750-2|MAP2K1 nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 77.302 1 77.302 76.802 77.802 0 0 0 0 0.21486 1 15028 15028 1.8442 0 1 54819 3455 36230 36251 53648 53648 0.00354693631857117 YIVNEPPP 8 Unmodified _YIVNEPPP_ 0 0 0 nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENSG00000126934|ENST00000262948|MAP2K2;ENST00000519737.1_1_8:29885889-29886273:+|nuORF;ENST00000600584.5_1_19:4095384-4099460:-|nuORF nc|ENSG00000169032|Q02750-2|MAP2K1 nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1698913574219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 106.39 1 106.39 105.89 106.89 0 0 0 0 0.21486 1 20915 20915 3.9444 0 1 54820 3455 36230 36251 53649 53649 0.00354693631857117 YIVNEPPP 8 Unmodified _YIVNEPPP_ 0 0 0 nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENSG00000126934|ENST00000262948|MAP2K2;ENST00000519737.1_1_8:29885889-29886273:+|nuORF;ENST00000600584.5_1_19:4095384-4099460:-|nuORF nc|ENSG00000169032|Q02750-2|MAP2K1 nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650695800781 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 106.44 1 106.44 105.94 106.94 0 0 0 0 0.21486 1 20927 20927 3.9444 0 1 54821 3455 36230 36251 53650 53650 0.00354693631857117 YIVNEPPP 8 Unmodified _YIVNEPPP_ 0 0 0 nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENSG00000126934|ENST00000262948|MAP2K2;ENST00000519737.1_1_8:29885889-29886273:+|nuORF;ENST00000600584.5_1_19:4095384-4099460:-|nuORF nc|ENSG00000169032|Q02750-2|MAP2K1 nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 80.261 1 76.751 76.251 77.251 -3.5102 0 0 0 0.21486 1 15674 15674 1.8442 0 1 54822 3455 36230 36251 53651 53651 0.00354693631857117 YIVNEPPP 8 Unmodified _YIVNEPPP_ 0 0 0 nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENSG00000126934|ENST00000262948|MAP2K2;ENST00000519737.1_1_8:29885889-29886273:+|nuORF;ENST00000600584.5_1_19:4095384-4099460:-|nuORF nc|ENSG00000169032|Q02750-2|MAP2K1 nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1653137207031 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 88.573 1 84.781 84.281 85.281 -3.7926 0 0 0 0.21486 1 17328 17328 1.8442 0 1 54823 3455 36230 36251 53652 53652 0.00354693631857117 YIVNEPPP 8 Unmodified _YIVNEPPP_ 0 0 0 nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENSG00000126934|ENST00000262948|MAP2K2;ENST00000519737.1_1_8:29885889-29886273:+|nuORF;ENST00000600584.5_1_19:4095384-4099460:-|nuORF nc|ENSG00000169032|Q02750-2|MAP2K1 nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.14794921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 88.502 1 84.506 84.006 85.006 -3.9953 0 0 0 0.21486 1 16859 16859 1.8442 0 1 54824 3455 36230 36251 53653 53653 0.00354693631857117 YIVNEPPP 8 Unmodified _YIVNEPPP_ 0 0 0 nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENSG00000126934|ENST00000262948|MAP2K2;ENST00000519737.1_1_8:29885889-29886273:+|nuORF;ENST00000600584.5_1_19:4095384-4099460:-|nuORF nc|ENSG00000169032|Q02750-2|MAP2K1 nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1646423339844 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 110.78 1 106.29 105.79 106.79 -4.4915 0 0 0 0.21486 1 21264 21264 3.9444 0 1 54825 3455 36230 36251 53654 53654 0.00354693631857117 YIVNEPPP 8 Unmodified _YIVNEPPP_ 0 0 0 nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENSG00000126934|ENST00000262948|MAP2K2;ENST00000519737.1_1_8:29885889-29886273:+|nuORF;ENST00000600584.5_1_19:4095384-4099460:-|nuORF nc|ENSG00000169032|Q02750-2|MAP2K1 nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16412353515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 176.49 1 171.62 171.12 172.12 -4.8739 0 0 0 0.21486 1 35108 35108 0.45834 0 1 54826 3455 36230 36251 53655 53655 0.00354693631857117 YIVNEPPP 8 Unmodified _YIVNEPPP_ 0 0 0 nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENSG00000126934|ENST00000262948|MAP2K2;ENST00000519737.1_1_8:29885889-29886273:+|nuORF;ENST00000600584.5_1_19:4095384-4099460:-|nuORF nc|ENSG00000169032|Q02750-2|MAP2K1 nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 88.083 1 84.333 83.833 84.833 -3.7501 0 0 0 0.21486 1 16856 16856 1.8442 0 1 54827 3455 36230 36251 53656 53656 0.00354693631857117 YIVQTILY 8 Unmodified _YIVQTILY_ 0 0 0 SLC5A12|p.G140R|1|0.29|ENSG00000148942|chr11:26711346-26711346|C/T|missense_variant;nc|ENSG00000148942|Q1EHB4-2|SLC5A12;ENSG00000148942|ENST00000396005|SLC5A12 SLC5A12|p.G140R|1|0.29|ENSG00000148942|chr11:26711346-26711346|C/T|missense_variant SLC5A12|p.G140R|1|0.29|ENSG00000148942|chr11:26711346-26711346|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 338.22576904296875 3 338.195304 1011.56408 NaN NaN NaN NaN NaN NaN NaN 127.61 1 122.81 122.31 123.31 -4.7958 0 0 0 0.21486 1 24493 24493 0.45834 0 1 54828 4766 36231 36252 53657 53657 0.05876412734153291 YIVSVGYQ 8 Unmodified _YIVSVGYQ_ 0 0 0 ENST00000515164.1_1_15:42103000-42104860:+|nuORF;nc|ENSG00000137802|O60336-5|MAPKBP1;ENST00000502292.5_1_15:42067473-42104860:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 ENST00000515164.1_1_15:42103000-42104860:+|nuORF ENST00000515164.1_1_15:42103000-42104860:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 63.964 1 63.964 63.464 64.464 0 0 0 0 0.23881 1 12308 12308 0.62683 0 1 54829 4110 36232 36253 53658 53658 0.003546936318684857 YIVSVGYQ 8 Unmodified _YIVSVGYQ_ 0 0 0 ENST00000515164.1_1_15:42103000-42104860:+|nuORF;nc|ENSG00000137802|O60336-5|MAPKBP1;ENST00000502292.5_1_15:42067473-42104860:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 ENST00000515164.1_1_15:42103000-42104860:+|nuORF ENST00000515164.1_1_15:42103000-42104860:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 176 1 171.12 170.62 171.62 -4.8739 0 0 0 0.2386 1 35001 35001 0.12286 0 1 54830 4110 36232 36253 53659 53659 0.003546936318684857 YIVSVGYQ 8 Unmodified _YIVSVGYQ_ 0 0 0 ENST00000515164.1_1_15:42103000-42104860:+|nuORF;nc|ENSG00000137802|O60336-5|MAPKBP1;ENST00000502292.5_1_15:42067473-42104860:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 ENST00000515164.1_1_15:42103000-42104860:+|nuORF ENST00000515164.1_1_15:42103000-42104860:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16412353515625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 176.48 1 171.6 171.1 172.1 -4.8739 0 0 0 0.2386 1 35105 35105 0.12286 0 1 54831 4110 36232 36253 53660 53660 0.003546936318684857 YIVSVGYQ 8 Unmodified _YIVSVGYQ_ 0 0 0 ENST00000515164.1_1_15:42103000-42104860:+|nuORF;nc|ENSG00000137802|O60336-5|MAPKBP1;ENST00000502292.5_1_15:42067473-42104860:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 ENST00000515164.1_1_15:42103000-42104860:+|nuORF ENST00000515164.1_1_15:42103000-42104860:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 175.99 1 171.09 170.59 171.59 -4.9008 0 0 0 0.2386 1 35083 35083 0.12286 0 1 54832 4110 36232 36253 53661 53661 0.003546936318684857 YIWLCLPML 9 Unmodified _YIWLCLPML_ 0 0 0 REV__ENSG00000145248|ENST00000273861|SLC10A4 REV__ENSG00000145248|ENST00000273861|SLC10A4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3214721679688 2 576.303224 1150.5919 NaN NaN NaN NaN NaN NaN NaN 175.98 1 171.11 170.61 171.61 -4.8739 0 0 0 0.23508 1 34998 34998 5.2307 0 1 + 54833 16832 36233 36254 53662 53662 0.0226227639834633 YIYFRSRRLV 10 Unmodified _YIYFRSRRLV_ 0 0 0 nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5;ENSG00000100341|ENST00000216177|PNPLA5 nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5 nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.23919677734375 3 458.266456 1371.77754 0.25323 0.00011605 -1.2152 -0.0005569 -0.96201 -0.00044085 458.2659004746167 120.96 0.61695 120.96 120.64 121.26 0 29 16 2 0 0 0 0.75099 1 23836 23836 5.4027 0.99656 1 3116700 54834 1956 36234 36255 53663 53663 0.10652138233695041 YIYFRSRRLV 10 Unmodified _YIYFRSRRLV_ 0 0 0 nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5;ENSG00000100341|ENST00000216177|PNPLA5 nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5 nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23150634765625 3 458.266456 1371.77754 0.29208 0.00013385 -1.0422 -0.0004776 -0.75012 -0.00034375 458.26591198384 125.23 0.59793 120.46 120.16 120.76 -4.7681 38 16 3 0 0 0 0.75099 1 24043 24043 5.4027 0.99656 1 2062400 54835 1956 36234 36255 53664 53664 0.10652138233695041 YIYFRSRRLV 10 Unmodified _YIYFRSRRLV_ 0 0 0 nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5;ENSG00000100341|ENST00000216177|PNPLA5 nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5 nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 458.266456 1371.77754 0.25323 0.00011605 -1.2152 -0.0005569 -0.96201 -0.00044085 458.2659004746167 120.96 0.61695 120.96 120.64 121.26 0 0 0 NaN 5.4027 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3116700 54836 1956 36234 36255 0.10652138233695041 YIYKIKRRLRE 11 Unmodified _YIYKIKRRLRE_ 0 0 0 tr|U7SU99|U7SU99_FUSNUMFStransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01074PE=4SV=1 tr|U7SU99|U7SU99_FUSNUMFStransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01074PE=4SV=1 tr|U7SU99|U7SU99_FUSNUMFStransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01074PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 769.4735717773438 2 769.469909 1536.92527 NaN NaN NaN NaN NaN NaN NaN 168.63 1 163.7 163.2 164.2 -4.9295 0 0 0 0.22632 1 33252 33252 0.00056442 0 1 54837 26199 36235 36256 53665 53665 0.17828029767701992 YIYRWHNLELY 11 Unmodified _YIYRWHNLELY_ 0 0 0 REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3954467773438 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 106.54 1 102.28 101.78 102.78 -4.2638 0 0 0 0.22632 1 20971 20971 0.094841 0 1 + 54838 16153 36236 36257 53666 53666 0.0159609344304954 YIYRWHNLELY 11 Unmodified _YIYRWHNLELY_ 0 0 0 REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3856201171875 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 118.63 1 114.13 113.63 114.63 -4.502 0 0 0 0.22632 1 23393 23393 0.026206 0 1 + 54839 16153 36236 36257 53667 53667 0.0159609344304954 YIYRWHNLELY 11 Unmodified _YIYRWHNLELY_ 0 0 0 REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4031372070312 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 175 1 170.11 169.61 170.61 -4.8845 0 0 0 0.23634 1 34783 34783 3.2813 0.28607 1 + 54840 16153 36236 36257 53668 53668 0.0159609344304954 YIYRWHNLELY 11 Unmodified _YIYRWHNLELY_ 0 0 0 REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3938598632812 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 118.22 1 113.81 113.31 114.31 -4.4088 0 0 0 0.22632 1 22750 22750 0.026206 0 1 + 54841 16153 36236 36257 53669 53669 0.0159609344304954 YIYTDSRY 8 Unmodified _YIYTDSRY_ 0 0 0 HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.259521484375 2 540.753464 1079.49238 0.60987 0.00032979 0.78524 0.00042462 1.3951 0.00075441 540.755510600809 114.92 0.17444 110.61 110.48 110.66 -4.3135 5 4 2 0 0 0 0.64227 1 22106 22106 19.439 0 1 554330 54842 11883 36237 36258 53670 53670 -0.044191266903681026 YKAGKLRA 8 Unmodified _YKAGKLRA_ 0 0 0 tr|U7T2F3|U7T2F3_FUSNUNADP-dependentoxidoreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00546PE=4SV=1 tr|U7T2F3|U7T2F3_FUSNUNADP-dependentoxidoreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00546PE=4SV=1 tr|U7T2F3|U7T2F3_FUSNUNADP-dependentoxidoreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00546PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 453.7593688964844 2 453.779619 905.544686 NaN NaN NaN NaN NaN NaN NaN 14.643 1 13.432 12.932 13.932 -1.2106 0 0 0 0.2396 1 1958 1958 0 0 1 54843 26361 36238 36259 53671 53671 0.08813501233873922 YKDSLFGV 8 Unmodified _YKDSLFGV_ 0 0 0 REV__tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 REV__tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1650390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 175.77 1 170.86 170.36 171.36 -4.9008 0 0 0 0.2386 1 35034 35034 0.063987 0 1 + 54844 25347 36239 36260 53672 53672 0.00354693631857117 YKEIFTFIWF 10 Unmodified _YKEIFTFIWF_ 0 0 0 ENST00000366541.7_1_1:243663111-243663186:+|nuORF ENST00000366541.7_1_1:243663111-243663186:+|nuORF ENST00000366541.7_1_1:243663111-243663186:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24566650390625 3 465.244547 1392.71181 NaN NaN NaN NaN NaN NaN NaN 23.9 1 22.111 21.611 22.611 -1.7886 0 0 0 2.8426 1 3865 3865 0.0013812 0.0008168 1 54845 9045 36240 36261 53673 53673 0.03116304268132808 YKEQMFPIWSI 11 Unmodified _YKEQMFPIWSI_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24603271484375 3 481.244329 1440.71116 0.11845 5.7005E-05 1.5779 0.00075935 1.6963 0.00081635 481.2452424399842 127.28 0.62076 122.66 122.3 122.92 -4.6172 22 17 2 0 0 0 0.65515 1 25053 25053 3.0723 0 1 1573800 + 54846 19411 36241 36262 53674 53674 0.00843141556788396 YKERIMLAK 9 Unmodified _YKERIMLAK_ 0 0 0 REV__nc|ENSG00000133805|Q01432-2|AMPD3 REV__nc|ENSG00000133805|Q01432-2|AMPD3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3317260742188 2 576.333901 1150.65325 NaN NaN NaN NaN NaN NaN NaN 30.888 1 28.772 28.272 29.272 -2.1167 0 0 0 0.19627 1 5593 5593 0.0033805 0 1 + 54847 13040 36242 36263 53675 53675 0.08394924421986616 YKERYKRLFRF 11 Unmodified _YKERYKRLFRF_ 0 0 0 REV__nc|ENSG00000082212|P23368-2|ME2 REV__nc|ENSG00000082212|P23368-2|ME2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 535.80029296875 3 535.971932 1604.89397 NaN NaN NaN NaN NaN NaN NaN 170.83 1 165.96 165.46 166.46 -4.873 0 0 0 0.22632 1 33827 33827 0.50596 0 1 + 54848 14436 36243 36264 53676 53676 0.11571456733577179 YKFYVYFAC 9 Unmodified _YKFYVYFAC_ 0 0 0 L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|80|3|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|80|3|anti-sense L1MEc_dup13396|chr12:12101391-12102664:+|1.620703183190708|0.1673385782039856|3.28|479.0|80|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.28173828125 2 602.280803 1202.54705 NaN NaN NaN NaN NaN NaN NaN 78.489 1 78.489 77.989 78.989 0 0 0 0 0.19632 1 15277 15277 0.40827 0.36448 1 54849 12038 36244 36265 53677 53677 -0.0461183114330197 YKGESCEEADC 11 Unmodified _YKGESCEEADC_ 0 0 0 TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant;TENM3|p.Y2250Mfs*4|1|0.24|ENSG00000218336|chr4:182793414-182793414|T/-|frameshift_variant;ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 617.2891235351562 2 617.223553 1232.43255 NaN NaN NaN NaN NaN NaN NaN 171.98 1 171.98 171.48 172.48 0 0 0 0 0.22632 1 35476 35476 0.11104 0.037778 1 54850 7756 36245 36266 53678 53678 -0.17436553478228234 YKGLPRAI 8 Unmodified _YKGLPRAI_ 0 0 0 REV__ENST00000404151.1_1_6:34584794-34584938:+|nuORF REV__ENST00000404151.1_1_6:34584794-34584938:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 459.2457580566406 2 459.281995 916.549437 NaN NaN NaN NaN NaN NaN NaN 122.95 1 118.21 117.71 118.71 -4.731 0 0 0 0.22834 1 23619 23619 1.7423 0 1 + 54851 21375 36246 36267 53679 53679 0.08782385376639468 YKICDYYNY 9 Unmodified _YKICDYYNY_ 0 0 0 tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1 tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1 tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7813720703125 2 622.768257 1243.52196 NaN NaN NaN NaN NaN NaN NaN 81.305 1 81.305 80.805 81.805 0 0 0 0 0.22621 1 15832 15832 15.847 3.6065 1 54852 26033 36247 36268 53680 53680 -0.09005930736543633 YKICDYYNY 9 Unmodified _YKICDYYNY_ 0 0 0 tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1 tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1 tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7651977539062 2 622.768257 1243.52196 NaN NaN NaN NaN NaN NaN NaN 61.355 1 57.985 57.485 58.485 -3.3694 0 0 0 0.19649 1 11439 11439 0.073264 0.029476 1 54853 26033 36247 36268 53681 53681 -0.09005930736543633 YKIIRSTAVT 10 Unmodified _YKIIRSTAVT_ 0 0 0 REV__ENST00000489894.5_1_2:71216836-71221917:-|nuORF REV__ENST00000489894.5_1_2:71216836-71221917:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3241577148438 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 157.76 1 152.49 151.99 152.99 -5.2712 0 0 0 2.8426 1 30603 30603 0.69767 0 1 + 54854 16766 36248 36269 53682 53682 0.10169962948521061 YKIKYFGF 8 Unmodified _YKIKYFGF_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENSG00000062650|ENST00000298767|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2747802734375 2 533.292028 1064.5695 NaN NaN NaN NaN NaN NaN NaN 153.56 1 153.56 153.06 154.06 0 0 0 0 0.23749 1 30771 30771 0.12286 0 1 54855 12222 36249 36270 53683 53683 0.03980136316590688 YKIKYFGF 8 Unmodified _YKIKYFGF_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENSG00000062650|ENST00000298767|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.278076171875 2 533.292028 1064.5695 NaN NaN NaN NaN NaN NaN NaN 158.1 1 153.3 152.8 153.8 -4.7952 0 0 0 0.23749 1 31438 31438 0.25148 0 1 54856 12222 36249 36270 53684 53684 0.03980136316590688 YKIKYFGF 8 Unmodified _YKIKYFGF_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENSG00000062650|ENST00000298767|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28076171875 2 533.292028 1064.5695 NaN NaN NaN NaN NaN NaN NaN 40.408 1 37.869 37.369 38.369 -2.5398 0 0 0 0.23749 1 7242 7242 0.12286 0 1 54857 12222 36249 36270 53685 53685 0.03980136316590688 YKIKYFGF 8 Unmodified _YKIKYFGF_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENSG00000062650|ENST00000298767|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2731323242188 2 533.292028 1064.5695 NaN NaN NaN NaN NaN NaN NaN 160.71 1 155.48 154.98 155.98 -5.2299 0 0 0 0.23749 1 31209 31209 0.12286 0.049601 1 54858 12222 36249 36270 53686 53686 0.03980136316590688 YKIKYFGF 8 Unmodified _YKIKYFGF_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENSG00000062650|ENST00000298767|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2810668945312 2 533.292028 1064.5695 NaN NaN NaN NaN NaN NaN NaN 162.24 1 157.1 156.6 157.6 -5.1438 0 0 0 0.23749 1 31514 31514 0.12286 0 1 54859 12222 36249 36270 53687 53687 0.03980136316590688 YKKARYRRW 9 Unmodified _YKKARYRRW_ 0 0 0 REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 664.1492919921875 2 663.88073 1325.74691 NaN NaN NaN NaN NaN NaN NaN 178.07 1 173.28 172.78 173.78 -4.7898 0 0 0 0.19622 1 36430 36430 0.96228 0.45632 1 + 54860 13133 36250 36271 53688 53688 0.09706404639291577 YKKKMNRLYFI 11 Unmodified _YKKKMNRLYFI_ 0 0 0 REV__nc|ENSG00000131507|Q9BT67-2|NDFIP1 REV__nc|ENSG00000131507|Q9BT67-2|NDFIP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 752.4288940429688 2 752.428864 1502.84318 NaN NaN NaN NaN NaN NaN NaN 11.771 1 10.867 10.367 11.367 -0.90401 0 0 0 0.22632 1 1585 1585 0 0 1 + 54861 24038 36251 36272 53689 53689 0.11186791364389137 YKKQQDVW 8 Unmodified _YKKQQDVW_ 0 0 0 REV__FIGNL1|p.E300K|1|0.31|ENSG00000132436|chr7:50446390-50446390|C/T|missense_variant REV__FIGNL1|p.E300K|1|0.31|ENSG00000132436|chr7:50446390-50446390|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7772827148438 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 164.31 1 159.52 159.02 160.02 -4.7898 0 0 0 0.23025 1 32829 32829 0.12286 0 1 + 54862 16117 36252 36273 53690 53690 0.012608588175226032 YKKRDNKSL 9 Unmodified _YKKRDNKSL_ 0 0 0 REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant REV__DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3241577148438 2 576.330205 1150.64586 NaN NaN NaN NaN NaN NaN NaN 119.81 1 119.81 119.31 120.31 0 0 0 0 0.19669 1 23611 23611 0.12781 0 1 + 54863 13704 36253 36274 53691 53691 0.07655908145943613 YKKRKRKKKEK 11 Unmodified _YKKRKRKKKEK_ 0 0 0 REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 506.80572509765625 3 507.335093 1518.98345 -0.26643 -0.00013517 -0.45593 -0.00023131 -0.72237 -0.00036648 507.66931871948236 141.05 0.1709 136.06 135.96 136.13 -4.9877 7 4 2 0 0 0 0.89134 1 27137 27137 0.094841 0.094277 1 1278100 + 54864 20761 36254 36275 53692 53692 0.24471711412934383 YKKRVKRT 8 Unmodified _YKKRVKRT_ 0 0 0 tr|U7T3D1|U7T3D1_FUSNUSmallribosomalsubunitproteinuS17OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsQPE=3SV=1 tr|U7T3D1|U7T3D1_FUSNUSmallribosomalsubunitproteinuS17OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsQPE=3SV=1 tr|U7T3D1|U7T3D1_FUSNUSmallribosomalsubunitproteinuS17OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsQPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2012939453125 3 360.232975 1077.6771 NaN NaN NaN NaN NaN NaN NaN 52.793 1 49.698 49.198 50.198 -3.0954 0 0 0 0.21486 1 9752 9752 1.4819 0.28856 1 54865 26394 36255 36276 53693 53693 0.14136525970684488 YKKRVKRT 8 Unmodified _YKKRVKRT_ 0 0 0 tr|U7T3D1|U7T3D1_FUSNUSmallribosomalsubunitproteinuS17OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsQPE=3SV=1 tr|U7T3D1|U7T3D1_FUSNUSmallribosomalsubunitproteinuS17OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsQPE=3SV=1 tr|U7T3D1|U7T3D1_FUSNUSmallribosomalsubunitproteinuS17OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsQPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 3 360.232975 1077.6771 NaN NaN NaN NaN NaN NaN NaN 53.017 1 49.922 49.422 50.422 -3.0954 0 0 0 0.21486 1 9796 9796 1.4819 0.41044 1 54866 26394 36255 36276 53694 53694 0.14136525970684488 YKKRWKNE 8 Unmodified _YKKRWKNE_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3200073242188 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 20.776 1 20.776 20.276 21.276 0 0 0 0 0.2396 1 3452 3452 0.62683 0.50396 1 54867 1810 36256 36277 53695 53695 0.055439428370846144 YKKRWKNE 8 Unmodified _YKKRWKNE_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.323974609375 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 157.71 1 152.42 151.92 152.92 -5.2854 0 0 0 0.23782 1 30608 30608 0.12286 0 1 54868 1810 36256 36277 53696 53696 0.055439428370846144 YKKVKESRL 9 Unmodified _YKKVKESRL_ 0 0 0 REV__tr|U7SUL7|U7SUL7_FUSNUD-methioninetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01219PE=3SV=1 REV__tr|U7SUL7|U7SUL7_FUSNUD-methioninetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01219PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3209838867188 2 575.850773 1149.68699 0.29702 0.00017104 -2.372 -0.0013659 -2.075 -0.0011949 575.8519539839514 146.53 0.14072 146.53 146.43 146.57 0 5 3 2 0 0 0 0.7009 1 29284 29284 6.2058 0.9089 1 1460500 + 54869 25171 36257 36278 53697 53697 0.11813669185426079 YKKYWPRREIL 11 Unmodified _YKKYWPRREIL_ 0 0 0 ENST00000347053.7_1_7:107002482-107002769:-|nuORF ENST00000347053.7_1_7:107002482-107002769:-|nuORF ENST00000347053.7_1_7:107002482-107002769:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 517.923095703125 3 517.964666 1550.87217 NaN NaN NaN NaN NaN NaN NaN 156.32 1 156.32 155.82 156.82 0 0 0 0 0.23698 1 31361 31361 0.094841 0 1 54870 8910 36258 36279 53698 53698 0.11876651985039643 YKLDALNEV 9 Unmodified _YKLDALNEV_ 0 0 0 REV__CLCN7|p.G153D|1|0.17|ENSG00000103249|chr16:1460842-1460842|C/T|missense_variant REV__CLCN7|p.G153D|1|0.17|ENSG00000103249|chr16:1460842-1460842|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2865600585938 2 532.784764 1063.55498 0.70174 0.00037387 -0.85297 -0.00045445 -0.15123 -8.0575E-05 532.7844869102879 71.704 1.8591 68.076 67.664 69.523 -3.6275 172 51 6 0 0 0 0.045725 1 13704 13704 72.968 12.894 1 588630000 + 54871 13445 36259 36280 53699 53699 0.025740193777892273 YKLDALNEV 9 Unmodified _YKLDALNEV_ 0 0 0 REV__CLCN7|p.G153D|1|0.17|ENSG00000103249|chr16:1460842-1460842|C/T|missense_variant REV__CLCN7|p.G153D|1|0.17|ENSG00000103249|chr16:1460842-1460842|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2862548828125 2 532.784764 1063.55498 0.41023 0.00021857 -0.67486 -0.00035955 -0.26462 -0.00014099 532.7845820580405 71.57 2.546 68.103 67.767 70.314 -3.4671 199 72 6 0 0 0 0.053942 1 13754 13754 69.105 6.5322 1 604140000 + 54872 13445 36259 36280 53700 53700 0.025740193777892273 YKLLDHIYWCK 11 Unmodified _YKLLDHIYWCK_ 0 0 0 REV__ENST00000482672.1_1_1:161127020-161127131:+|nuORF REV__ENST00000482672.1_1_1:161127020-161127131:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 742.3880004882812 2 741.384122 1480.75369 0.45336 0.00033612 -0.76859 -0.00056982 -0.31523 -0.00023371 741.3836882626368 22.023 0.31705 22.023 21.838 22.155 0 21 8 3 0 0 0 0.66146 1 3706 3706 0.172 0.14579 1 1637100 + 54873 16706 36260 36281 53701 53701 0.032545366850172286 YKMWKSKLRFF 11 Unmodified _YKMWKSKLRFF_ 0 0 0 REV__nc|ENSG00000105492|O43699-4|SIGLEC6 REV__nc|ENSG00000105492|O43699-4|SIGLEC6 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 511.8714904785156 3 511.95148 1532.83261 NaN NaN NaN NaN NaN NaN NaN 164.5 1 159.46 158.96 159.96 -5.0446 0 0 0 0.22632 1 32088 32088 0.172 0 1 + 54874 14995 36261 36282 53702 53702 0.08750808709942248 YKNLISVQN 9 Unmodified _YKNLISVQN_ 0 0 0 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 157.52 1 157.52 157.02 158.02 0 0 0 0 0.23508 1 31619 31619 1.0715 0 1 + 54875 13711 36262 36283 53703 53703 0.0461712798901317 YKNLISVQN 9 Unmodified _YKNLISVQN_ 0 0 0 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.20196533203125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 75.617 1 72.201 71.701 72.701 -3.4151 0 0 0 0.23508 1 14749 14749 2.4985 0 1 + 54876 13711 36262 36283 53704 53704 0.0461712798901317 YKNLISVQN 9 Unmodified _YKNLISVQN_ 0 0 0 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.20208740234375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 76.035 1 72.312 71.812 72.812 -3.7227 0 0 0 0.23508 1 14391 14391 2.4985 0 1 + 54877 13711 36262 36283 53705 53705 0.0461712798901317 YKNLISVQN 9 Unmodified _YKNLISVQN_ 0 0 0 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2008056640625 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 131.52 1 126.67 126.17 127.17 -4.8527 0 0 0 0.23508 1 25259 25259 1.0715 0 1 + 54878 13711 36262 36283 53706 53706 0.0461712798901317 YKNSDKFFM 9 Unmodified _YKNSDKFFM_ 0 0 0 REV__ENST00000378509.8_1_7:133976258-133976573:-|nuORF REV__ENST00000378509.8_1_7:133976258-133976573:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.25927734375 2 590.278792 1178.54303 NaN NaN NaN NaN NaN NaN NaN 70.386 1 66.806 66.306 67.306 -3.5798 0 0 0 0.23508 1 13265 13265 10.824 1.4408 1 + 54879 21115 36263 36284 53707 53707 -0.0390992063705653 YKPLAHLS 8 Unmodified _YKPLAHLS_ 0 0 0 HERVH-int_dup3524|chrX:4541521-4542183:-|2.9075701410676067|0.0031813577269869|9.84|447.0|1|1|sense HERVH-int_dup3524|chrX:4541521-4542183:-|2.9075701410676067|0.0031813577269869|9.84|447.0|1|1|sense HERVH-int_dup3524|chrX:4541521-4542183:-|2.9075701410676067|0.0031813577269869|9.84|447.0|1|1|sense MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.164794921875 3 310.179877 927.517802 NaN NaN NaN NaN NaN NaN NaN 133.63 1 128.82 128.32 129.32 -4.8175 0 0 0 0.21486 1 25719 25719 3.5965 0 1 54880 11889 36264 36285 53708 53708 0.05114392622692776 YKRALLLL 8 Unmodified _YKRALLLL_ 0 0 0 nc|ENSG00000077800|O75344-3|FKBP6;nc|ENSG00000077800|O75344-2|FKBP6;ENSG00000077800|ENST00000252037|FKBP6 nc|ENSG00000077800|O75344-3|FKBP6 nc|ENSG00000077800|O75344-3|FKBP6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 330.9970703125 3 330.555055 988.643337 -0.40267 -0.0001331 0.86114 0.00028466 0.45847 0.00015155 330.55525766220075 29.944 0.31576 29.944 29.849 30.164 0 10 8 2 0 0 0 1.0282 1 5362 5362 0.40072 0 1 486040 54881 1563 36265 36286 53709 53709 0.14856104478940324 YKRARRRRKKF 11 Unmodified _YKRARRRRKKF_ 0 0 0 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.260009765625 3 522.330565 1563.96987 0.20264 0.00010584 -3.5009 -0.0018286 -3.2983 -0.0017228 522.3283593975195 140.7 0.21228 140.7 140.58 140.79 0 7 5 2 0 0 0 0.8267 1 28023 28023 0.08335 0.08335 1 7569800 + 54882 18286 36266 36287 53710 53710 0.2104389842436376 YKRARRRRKKF 11 Unmodified _YKRARRRRKKF_ 0 0 0 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2628173828125 3 522.330565 1563.96987 0.36362 0.00018993 -1.555 -0.00081224 -1.1914 -0.00062231 522.6639459922387 145.72 0.23994 140.72 140.57 140.81 -5 8 6 2 0 0 0 0.66313 2 28172 28172;28174 0 0 1 4236700 + 54883 18286 36266 36287 53711;53712 53711 0.2104389842436376 YKRARRRRKKF 11 Unmodified _YKRARRRRKKF_ 0 0 0 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2691040039062 3 522.330565 1563.96987 NaN NaN NaN NaN NaN NaN NaN 143.82 1 138.92 138.42 139.42 -4.8982 0 0 0 0.22632 1 27760 27760 0 0 1 + 54884 18286 36266 36287 53713 53713 0.2104389842436376 YKRARRRRKKF 11 Unmodified _YKRARRRRKKF_ 0 0 0 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2807006835938 3 522.330565 1563.96987 0.36362 0.00018993 -1.555 -0.00081224 -1.1914 -0.00062231 522.6639459922387 145.72 0.23994 140.72 140.57 140.81 -5 8 6 2 0 0 0 0.96228 1 28160 28160 0 0 1 4236700 + 54885 18286 36266 36287 53714 53714 0.2104389842436376 YKRLKRVA 8 Unmodified _YKRLKRVA_ 0 0 0 REV__ENST00000492638.1_1_21:45209510-45212627:+|nuORF REV__ENST00000492638.1_1_21:45209510-45212627:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 345.21044921875 3 345.225821 1032.65563 NaN NaN NaN NaN NaN NaN NaN 85.389 1 81.677 81.177 82.177 -3.7117 0 0 0 0.21486 1 16313 16313 0.40072 0 1 + 54886 17405 36267 36288 53715 53715 0.1406114094197619 YKRLPYLREKR 11 Unmodified _YKRLPYLREKR_ 0 0 0 REV__ENST00000373570.8_1_9:127620199-127620799:-|nuORF REV__ENST00000373570.8_1_9:127620199-127620799:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2176208496094 4 381.230768 1520.89397 0.343 0.00013076 -0.67385 -0.00025689 -0.33085 -0.00012613 381.4812755051014 29.895 0.455 28.003 27.752 28.207 -1.8928 14 12 2 0 0 0 0.82511 1 5079 5079 0.29564 0.20079 1 456330 + 54887 16367 36268 36289 53716 53716 0.15435456733575847 YKRSAALS 8 Unmodified _YKRSAALS_ 0 0 0 nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A nc|ENSG00000054793|O75110-2|ATP9A nc|ENSG00000054793|O75110-2|ATP9A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 448.3495788574219 2 448.253434 894.492316 NaN NaN NaN NaN NaN NaN NaN 79.714 1 75.909 75.409 76.409 -3.8048 0 0 0 0.21486 1 15127 15127 5.2307 0 1 54888 1268 36269 36290 53717 53717 0.04084918100284085 YKRSYLKGCYL 11 Unmodified _YKRSYLKGCYL_ 0 0 0 REV__ENSG00000112238|ENST00000369215|PRDM13 REV__ENSG00000112238|ENST00000369215|PRDM13 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2503356933594 3 465.248074 1392.72239 NaN NaN NaN NaN NaN NaN NaN 113.84 1 109.57 109.07 110.07 -4.2725 0 0 0 0.22632 1 21925 21925 1.4551 1.2831 1 + 54889 15288 36270 36291 53718 53718 0.04173963650941914 YKRTRLNINES 11 Unmodified _YKRTRLNINES_ 0 0 0 REV__PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant REV__PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25445556640625 3 465.256397 1392.74736 NaN NaN NaN NaN NaN NaN NaN 67.978 1 64.442 63.942 64.942 -3.5362 0 0 0 0.22632 1 12764 12764 3.0723 0 1 + 54890 16806 36271 36292 53719 53719 0.06669734777824488 YKSEFEGP 8 Unmodified _YKSEFEGP_ 0 0 0 REV__nc|ENSG00000130540|Q9BR01-2|SULT4A1 REV__nc|ENSG00000130540|Q9BR01-2|SULT4A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7364196777344 2 478.721633 955.428712 NaN NaN NaN NaN NaN NaN NaN 75.412 1 71.689 71.189 72.189 -3.7227 0 0 0 0.21452 1 14263 14263 13.508 4.1604 1 + 54891 16014 36272 36293 53720 53720 -0.05078487127468634 YKSGDLVF 8 Unmodified _YKSGDLVF_ 0 0 0 ENSG00000112273|ENST00000510882|HDGFL1 ENSG00000112273|ENST00000510882|HDGFL1 ENSG00000112273|ENST00000510882|HDGFL1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1648864746094 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 176.01 1 171.14 170.64 171.64 -4.8739 0 0 0 0.21486 1 35004 35004 1.6526 0 1 54892 2679 36273 36294 53721 53721 0.003546936318684857 YKTGLIKIVK 10 Unmodified _YKTGLIKIVK_ 0 0 0 REV__tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1 REV__tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 581.8815307617188 2 581.881542 1161.74853 NaN NaN NaN NaN NaN NaN NaN 10.702 1 9.6358 9.1358 10.136 -1.0664 0 0 0 0.22588 1 1173 1173 0 0 1 + 54893 25239 36274 36295 53722 53722 0.17412600884676976 YKTLITTKLG 10 Unmodified _YKTLITTKLG_ 0 0 0 ENST00000265870.7_1_10:70248298-70276562:-|nuORF;ENSG00000122912|ENST00000609923|SLC25A16 ENST00000265870.7_1_10:70248298-70276562:-|nuORF ENST00000265870.7_1_10:70248298-70276562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 379.9160461425781 3 379.90078 1136.68051 NaN NaN NaN NaN NaN NaN NaN 10.032 1 8.9388 8.4388 9.4388 -1.0936 0 0 0 0.22588 1 1114 1114 0 0 1 54894 8368 36275 36296 53723 53723 0.11763731234009356 YKVKQQLLIK 10 Unmodified _YKVKQQLLIK_ 0 0 0 REV__ENSG00000132855|ENST00000371129|ANGPTL3 REV__ENSG00000132855|ENST00000371129|ANGPTL3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7586669921875 2 630.905548 1259.79654 0.58115 0.00036665 -1.1975 -0.00075548 -0.61631 -0.00038883 630.9029086549826 149.08 0.14522 144.02 143.92 144.06 -5.0595 5 3 2 0 0 0 0.88533 1 28886 28886 2.7352 0 1 1119600 + 54895 16138 36276 36297 53724 53724 0.17703674804738512 YKVVEQGSH 9 Unmodified _YKVVEQGSH_ 0 0 0 ENST00000568805.5_1_16:20810381-20812539:-|nuORF ENST00000568805.5_1_16:20810381-20812539:-|nuORF ENST00000568805.5_1_16:20810381-20812539:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6966552734375 2 523.766906 1045.51926 NaN NaN NaN NaN NaN NaN NaN 24.327 1 22.793 22.293 23.293 -1.5342 0 0 0 0.23277 1 3957 3957 13.906 1.3745 1 54896 11398 36277 36298 53725 53725 -0.0016801807919364364 YKVVIPIP 8 Unmodified _YKVVIPIP_ 0 0 0 REV__ENSG00000186566|ENST00000591680|GPATCH8 REV__ENSG00000186566|ENST00000591680|GPATCH8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.2379150390625 3 310.20039 927.57934 NaN NaN NaN NaN NaN NaN NaN 124.97 1 120.37 119.87 120.87 -4.5984 0 0 0 0.21486 1 24643 24643 0.45834 0 1 + 54897 19037 36278 36299 53726 53726 0.11265324321982462 YKWLRYSY 8 Unmodified _YKWLRYSY_ 0 0 0 nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5 nc|ENSG00000139990|Q96JK2-2|DCAF5 nc|ENSG00000139990|Q96JK2-2|DCAF5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 393.29083251953125 3 393.537953 1177.59203 -0.6963 -0.00027402 0.28257 0.0001112 -0.41373 -0.00016282 393.53829517082374 46.167 0.13813 43.301 43.198 43.336 -2.8666 5 3 2 0 0 0 1.0265 1 8384 8384 3.9444 1.2092 1 230020 54898 4276 36279 36300 53727 53727 0.010337357142361725 YKWLRYSY 8 Unmodified _YKWLRYSY_ 0 0 0 nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5 nc|ENSG00000139990|Q96JK2-2|DCAF5 nc|ENSG00000139990|Q96JK2-2|DCAF5 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 393.537953 1177.59203 -0.2313 -9.1026E-05 -0.18441 -7.2573E-05 -0.41571 -0.0001636 393.5378562200731 46.273 0.21017 43.433 43.311 43.521 -2.8409 0.06597 -0.00014317 NaN 3.9444 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 453440 54899 4276 36279 36300 0.010337357142361725 YKWWQKYQKRK 11 Unmodified _YKWWQKYQKRK_ 0 0 0 ENST00000491834.5_1_3:3197887-3221343:-|nuORF;CRBN|p.Q297Lfs*6|1|0.04|ENSG00000113851|chr3:3154021-3154022|-/CTGTATA|frameshift_variant;nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN;ENST00000482844.5_1_3:3196419-3214524:-|nuORF ENST00000491834.5_1_3:3197887-3221343:-|nuORF ENST00000491834.5_1_3:3197887-3221343:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7876586914062 3 547.971932 1640.89397 0.27806 0.00015237 -0.28771 -0.00015766 -0.0096491 -5.2874E-06 547.9729173189239 147.51 0.17072 142.8 142.66 142.83 -4.7095 7 4 2 0 0 0 0.89122 1 29274 29274 0.50596 0.50596 1 2678200 54900 723 36280 36301 53728 53728 0.09915456733574501 YKYVYIYEELV 11 Unmodified _YKYVYIYEELV_ 0 0 0 ENST00000436587.6_1_7:7283538-7283649:+|nuORF ENST00000436587.6_1_7:7283538-7283649:+|nuORF ENST00000436587.6_1_7:7283538-7283649:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 742.3871459960938 2 741.381768 1480.74898 1.5079 0.0011179 1.3325 0.00098789 2.8404 0.0021058 741.3829022324029 23.706 0.34351 22.152 21.976 22.319 -1.5532 18 9 3 0 0 0 0.65887 1 4091 4091 0.026206 0 1 1843100 54901 9842 36281 36302 53729 53729 0.027839310232366188 YLADQNNQV 9 Unmodified _YLADQNNQV_ 0 0 0 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant;PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000285124.12_1_18:9562972-9595043:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.281494140625 2 532.753995 1063.49344 0.30866 0.00016444 -1.7931 -0.00095526 -1.4844 -0.00079082 532.7527625196507 42.516 0.83587 42.516 42.011 42.847 0 33 23 2 0 0 0 0.62102 1 7977 7977 11.64 3.7301 1 1523900 54902 5028 36282 36303 53730 53730 -0.03576912321477721 YLADQNNQV 9 Unmodified _YLADQNNQV_ 0 0 0 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant;PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000285124.12_1_18:9562972-9595043:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2828369140625 2 532.753995 1063.49344 0.059883 3.1903E-05 0.87195 0.00046454 0.93184 0.00049644 532.7544869055727 45.407 0.52673 42.566 42.334 42.861 -2.8409 24 14 2 0 0 0 0.31673 1 8569 8569 32.786 18.88 1 1405000 54903 5028 36282 36303 53731 53731 -0.03576912321477721 YLADQNNQV 9 Unmodified _YLADQNNQV_ 0 0 0 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant;PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000285124.12_1_18:9562972-9595043:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2824096679688 2 532.753995 1063.49344 0.37416 0.00019934 0.27273 0.0001453 0.64689 0.00034463 532.7538680459154 45.594 0.55853 42.729 42.342 42.901 -2.8653 27 15 2 0 0 0 0.46541 1 8258 8258 21.747 13.001 1 1067000 54904 5028 36282 36303 53732 53732 -0.03576912321477721 YLADQNNQV 9 Unmodified _YLADQNNQV_ 0 0 0 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant;PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000285124.12_1_18:9562972-9595043:-|nuORF;nc|ENSG00000154845|Q8TF05-2|PPP4R1 PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2835693359375 2 532.753995 1063.49344 -0.053073 -2.8275E-05 0.91399 0.00048693 0.86092 0.00045866 532.7545102677327 45.615 0.53142 42.748 42.397 42.928 -2.8666 25 14 2 0 0 0 0.27986 3 8269 8245;8248;8269 32.786 16.939 1 1354200 54905 5028 36282 36303 53733;53734;53735 53735 -0.03576912321477721 YLADVTNAL 9 Unmodified _YLADVTNAL_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2585144042969 2 490.258382 978.502212 0.13672 6.7029E-05 -0.053521 -2.6239E-05 0.083201 4.079E-05 490.2583853541985 129.27 0.55154 124.64 124.54 125.09 -4.6292 19 15 2 0 0 0 0.1793 1 25529 25529 39.957 5.8549 1 1136600 54906 3477 36283 36304 53736 53736 0.012100613149868877 YLADVTNAL 9 Unmodified _YLADVTNAL_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25726318359375 2 490.258382 978.502212 0.1566 7.6776E-05 -0.07244 -3.5514E-05 0.084163 4.1262E-05 490.25832206539377 129.66 0.45815 124.83 124.62 125.08 -4.8355 19 12 2 0 0 0 0.13708 1 24874 24874 46.021 19.137 1 1099400 54907 3477 36283 36304 53737 53737 0.012100613149868877 YLAKLGTYHHY 11 Unmodified _YLAKLGTYHHY_ 0 0 0 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1;sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 456.2131042480469 3 455.903183 1364.68772 NaN NaN NaN NaN NaN NaN NaN 12.928 1 12.928 12.428 13.428 0 0 0 0 0.22632 1 1834 1834 0.172 0.14579 1 54908 25728 36284 36305 53738 53738 0.019964638344617924 YLALLVGQIY 10 Unmodified _YLALLVGQIY_ 0 0 0 REV__nc|ENSG00000170959|M0R2J8|DCDC1 REV__nc|ENSG00000170959|M0R2J8|DCDC1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3206787109375 2 576.8368 1151.65905 0.15402 8.8842E-05 0.12122 6.9923E-05 0.27523 0.00015877 576.8364337131138 131.59 0.10056 126.74 126.67 126.77 -4.8527 4 2 2 0 0 0 0.91046 1 25265 25265 4.3292 0 1 756720 + 54909 18192 36285 36306 53739 53739 0.08928346205334492 YLALTHTET 9 Unmodified _YLALTHTET_ 0 0 0 REV__ENSG00000148386|ENST00000619315|LCN9 REV__ENSG00000148386|ENST00000619315|LCN9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.1814880371094 3 350.181835 1047.52368 NaN NaN NaN NaN NaN NaN NaN 109.95 1 105.76 105.26 106.26 -4.1826 0 0 0 0.23508 1 21159 21159 5.2969 2.5617 1 + 54910 16973 36286 36307 53740 53740 0.001814463437312952 YLALTPSAV 9 Unmodified _YLALTPSAV_ 0 0 0 REV__ENST00000532085.1_1_11:118895622-118896243:-|nuORF REV__ENST00000532085.1_1_11:118895622-118896243:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 312.1445007324219 3 312.179654 933.517133 NaN NaN NaN NaN NaN NaN NaN 107.18 1 107.18 106.68 107.68 0 0 0 0 0.23508 1 21075 21075 1.0715 0 1 + 54911 22780 36287 36308 53741 53741 0.047715531829908286 YLAQPFDYY 9 Unmodified _YLAQPFDYY_ 0 0 0 REV__CON__Q05443 REV__CON__Q05443 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.26806640625 2 590.27149 1178.52843 NaN NaN NaN NaN NaN NaN NaN 155.01 1 150.23 149.73 150.73 -4.7791 0 0 0 0.23508 1 30816 30816 9.3474 3.587 1 + + 54912 13530 36288 36309 53742 53742 -0.05369669513538611 YLATDVVVTI 10 Unmodified _YLATDVVVTI_ 0 0 0 REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7850341796875 2 547.310615 1092.60668 0.37867 0.00020725 -1.0761 -0.00058899 -0.69748 -0.00038174 547.3102166601384 144.6 0.72484 139.66 139.31 140.03 -4.9445 48 20 5 0 0 0 0.18836 1 27892 27892 6.5879 0 1 7130900 + 54913 19179 36289 36310 53743 53743 0.06407763071729278 YLCPSTCSDY 10 Unmodified _YLCPSTCSDY_ 0 0 0 USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;USP48|p.G702Wfs*5|1|0.12|ENSG00000090686|chr1:21706574-21706575|-/A|frameshift_variant;nc|ENSG00000090686|Q86UV5-2|USP48 USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3202514648438 2 576.222825 1150.4311 0.32431 0.00018687 1.4174 0.00081675 1.7417 0.0010036 576.7249763582637 146.03 0.17564 141.03 140.95 141.12 -5 8 4 3 0 0 0 0.53005 1 28257 28257 0.043787 0 1 1896900 54914 1792 36290 36311 53744 53744 -0.13810142776333123 YLCPVWISL 9 Unmodified _YLCPVWISL_ 0 0 0 nc|ENSG00000147246|P28335-2|HTR2C;ENSG00000147246|ENST00000276198|HTR2C nc|ENSG00000147246|P28335-2|HTR2C nc|ENSG00000147246|P28335-2|HTR2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7730712890625 2 547.291171 1092.56779 0.22016 0.00012049 2.4882 0.0013617 2.7083 0.0014822 547.2927586428044 99.743 0.3875 95.61 95.405 95.793 -4.1326 17 10 3 0 0 0 0.60698 1 19563 19563 30.225 17.182 1 1150800 54915 4693 36291 36312 53745 53745 0.025207592363585718 YLCPVWISL 9 Unmodified _YLCPVWISL_ 0 0 0 nc|ENSG00000147246|P28335-2|HTR2C;ENSG00000147246|ENST00000276198|HTR2C nc|ENSG00000147246|P28335-2|HTR2C nc|ENSG00000147246|P28335-2|HTR2C MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7720336914062 2 547.291171 1092.56779 0.28113 0.00015386 2.334 0.0012774 2.6151 0.0014312 547.29253550297 99.984 0.36884 95.687 95.482 95.851 -4.297 19 10 3 0 0 0 0.43406 1 19083 19083 23.148 0 1 2036600 54916 4693 36291 36312 53746 53746 0.025207592363585718 YLDCQMAVACK 11 Unmodified _YLDCQMAVACK_ 0 0 0 REV__ENST00000431975.6_1_6:131603328-131603382:+|nuORF REV__ENST00000431975.6_1_6:131603328-131603382:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76025390625 2 622.777244 1243.53994 NaN NaN NaN NaN NaN NaN NaN 169.25 1 164.38 163.88 164.88 -4.873 0 0 0 0.21129 1 33417 33417 16.149 5.3252 1 + 54917 21628 36292 36313 53747 53747 -0.0720925507771426 YLDCQMAVACK 11 Unmodified _YLDCQMAVACK_ 0 0 0 REV__ENST00000431975.6_1_6:131603328-131603382:+|nuORF REV__ENST00000431975.6_1_6:131603328-131603382:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7801513671875 2 622.777244 1243.53994 NaN NaN NaN NaN NaN NaN NaN 169.34 1 164.47 163.97 164.97 -4.873 0 0 0 0.21129 1 33440 33440 16.149 5.3252 1 + 54918 21628 36292 36313 53748 53748 -0.0720925507771426 YLDDAYPGRKL 11 Unmodified _YLDDAYPGRKL_ 0 0 0 ENST00000477078.2_1_10:106037658-106045722:+|nuORF;nc|ENSG00000065621|Q9H4Y5-2|GSTO2;nc|ENSG00000065621|Q9H4Y5-3|GSTO2;ENSG00000065621|ENST00000338595|GSTO2 ENST00000477078.2_1_10:106037658-106045722:+|nuORF ENST00000477078.2_1_10:106037658-106045722:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2154846191406 3 437.562827 1309.66665 0.21632 9.4653E-05 -0.23463 -0.00010266 -0.018307 -8.0107E-06 437.5627335028732 73.764 0.45736 73.764 73.555 74.013 0 22 12 2 0 0 0 0.90919 1 14341 14341 17.863 10.761 1 1506400 54919 1360 36293 36314 53749 53749 0.02420453734930561 YLDDAYPGRKL 11 Unmodified _YLDDAYPGRKL_ 0 0 0 ENST00000477078.2_1_10:106037658-106045722:+|nuORF;nc|ENSG00000065621|Q9H4Y5-2|GSTO2;nc|ENSG00000065621|Q9H4Y5-3|GSTO2;ENSG00000065621|ENST00000338595|GSTO2 ENST00000477078.2_1_10:106037658-106045722:+|nuORF ENST00000477078.2_1_10:106037658-106045722:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.21807861328125 3 437.562827 1309.66665 -0.14217 -6.2209E-05 0.25048 0.0001096 0.10831 4.7393E-05 437.56287294720994 77.451 0.4278 73.987 73.683 74.111 -3.4633 19 11 2 0 0 0 0.50795 1 15081 15081 22.775 15.298 1 2473900 54920 1360 36293 36314 53750 53750 0.02420453734930561 YLDDAYPGRKL 11 Unmodified _YLDDAYPGRKL_ 0 0 0 ENST00000477078.2_1_10:106037658-106045722:+|nuORF;nc|ENSG00000065621|Q9H4Y5-2|GSTO2;nc|ENSG00000065621|Q9H4Y5-3|GSTO2;ENSG00000065621|ENST00000338595|GSTO2 ENST00000477078.2_1_10:106037658-106045722:+|nuORF ENST00000477078.2_1_10:106037658-106045722:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.21539306640625 3 437.562827 1309.66665 -0.020564 -8.9982E-06 -0.083029 -3.633E-05 -0.10359 -4.5329E-05 437.5627869988219 77.825 0.53098 74.058 73.752 74.283 -3.7664 22 14 2 0 0 0 0.8501 1 14725 14725 25.997 18.52 1 1301800 54921 1360 36293 36314 53751 53751 0.02420453734930561 YLDDAYPGRKL 11 Unmodified _YLDDAYPGRKL_ 0 0 0 ENST00000477078.2_1_10:106037658-106045722:+|nuORF;nc|ENSG00000065621|Q9H4Y5-2|GSTO2;nc|ENSG00000065621|Q9H4Y5-3|GSTO2;ENSG00000065621|ENST00000338595|GSTO2 ENST00000477078.2_1_10:106037658-106045722:+|nuORF ENST00000477078.2_1_10:106037658-106045722:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2168273925781 3 437.562827 1309.66665 -0.10317 -4.5144E-05 0.041058 1.7966E-05 -0.062114 -2.7179E-05 437.56276110392065 77.665 0.48764 74.007 73.712 74.2 -3.6588 23 13 2 0 0 0 0.50795 1 14804 14804 22.775 15.298 1 1565900 54922 1360 36293 36314 53752 53752 0.02420453734930561 YLDDGHSFQY 10 Unmodified _YLDDGHSFQY_ 0 0 0 ENSG00000214013|ENST00000318010|GANC ENSG00000214013|ENST00000318010|GANC ENSG00000214013|ENST00000318010|GANC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7647705078125 2 622.76456 1243.51457 NaN NaN NaN NaN NaN NaN NaN 93.77 1 89.926 89.426 90.426 -3.844 0 0 0 0.22518 1 17979 17979 22.736 9.6938 1 54923 7716 36294 36315 53753 53753 -0.09744947012609373 YLDDWRGY 8 Unmodified _YLDDWRGY_ 0 0 0 REV__PLD2|p.H469Y|1|0.26|ENSG00000129219|chr17:4815884-4815884|C/T|missense_variant REV__PLD2|p.H469Y|1|0.26|ENSG00000129219|chr17:4815884-4815884|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7782592773438 2 544.245806 1086.47706 -0.18079 -9.8392E-05 1.2503 0.00068049 1.0695 0.0005821 544.2465044802042 110.02 1.0333 105.65 105.1 106.14 -4.3776 67 27 3 0 0 0 0.89386 1 21623 21623 3.5871 0 1 8300200 + 54924 24483 36295 36316 53754 53754 -0.06271993487553118 YLDHAGATL 9 Unmodified _YLDHAGATL_ 0 0 0 ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.25238037109375 2 480.742899 959.471246 -0.33456 -0.00016084 -0.10843 -5.2128E-05 -0.44299 -0.00021297 480.7433674118616 63.452 0.38212 63.452 63.26 63.642 0 14 10 2 0 0 0 0.13708 1 12186 12186 46.021 17.534 1 1039400 54925 1522 36296 36317 53755 53755 -0.010110919992371237 YLDHAGATL 9 Unmodified _YLDHAGATL_ 0 0 0 ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.25286865234375 2 480.742899 959.471246 0.30948 0.00014878 -1.2376 -0.00059499 -0.92816 -0.0004462 480.7419784498909 67.139 0.46707 63.642 63.457 63.924 -3.4965 14 12 2 0 0 0 0.11032 1 12593 12593 52.268 23.187 1 785770 54926 1522 36296 36317 53756 53756 -0.010110919992371237 YLDKMYTDD 9 Oxidation (M) _YLDKM(Oxidation (M))YTDD_ YLDKM(1)YTDD YLDKM(52)YTDD 0 0 1 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2689208984375 2 590.247354 1178.48016 0.26912 0.00015885 0.79208 0.00046753 1.0612 0.00062637 590.2476949990352 96.159 0.61879 96.159 95.836 96.455 0 44 17 3 0 0 0 0.23744 1 18826 18826 52.268 25.385 1 7137000 + 54927 16883 36297 36318 53757 53757 122 -0.1019453121573406 YLDKMYTDD 9 Oxidation (M) _YLDKM(Oxidation (M))YTDD_ YLDKM(1)YTDD YLDKM(46)YTDD 0 0 1 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2477416992188 2 590.247354 1178.48016 0.30855 0.00018212 0.58286 0.00034403 0.89141 0.00052615 590.2476382468548 100.23 0.78422 96.24 95.835 96.619 -3.9895 41 22 2 0 0 0 0.13708 1 19245 19245 46.021 17.534 1 6434900 + 54928 16883 36297 36318 53758 53758 122 -0.1019453121573406 YLDKMYTDD 9 Oxidation (M) _YLDKM(Oxidation (M))YTDD_ 0 0 1 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 590.247354 1178.48016 0.48025 0.00028347 0.42267 0.00024948 0.90292 0.00053295 590.2476568155436 100.42 0.65507 96.262 96.011 96.666 -4.1594 0.043443 -0.00027983 NaN 46.021 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2934600 + 54929 16883 36297 36318 122 -0.1019453121573406 YLDKMYTDD 9 Oxidation (M) _YLDKM(Oxidation (M))YTDD_ 0 0 1 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 590.247354 1178.48016 0.69523 0.00041036 0.84904 0.00050114 1.5443 0.0009115 590.2477745289654 100.51 0.78201 96.213 95.92 96.702 -4.297 -0.005242 0.00022349 NaN 46.021 47 22 3 NaN NaN NaN NaN 0 NaN NaN 0 5285600 + 54930 16883 36297 36318 122 -0.1019453121573406 YLDKVIDL 8 Unmodified _YLDKVIDL_ 0 0 0 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2641296386719 2 489.778951 977.543348 NaN NaN NaN NaN NaN NaN NaN 68.647 1 65.111 64.611 65.611 -3.5362 0 0 0 0.21486 1 12906 12906 9.3474 0.75416 1 54931 12484 36298 36319 53759 53759 0.053678223544807224 YLDLDKMSLY 10 Unmodified _YLDLDKMSLY_ 0 0 0 nc|ENSG00000100505|Q9C026|TRIM9;TRIM9|p.A268Pfs*14|1|0.38|ENSG00000100505|chr14:51094138-51094138|C/-|frameshift_variant;nc|ENSG00000100505|Q9C026-5|TRIM9;TRIM9|p.N657Kfs*9|1|0.29|ENSG00000100505|chr14:50979486-50979487|-/T|frameshift_variant;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9 nc|ENSG00000100505|Q9C026|TRIM9 nc|ENSG00000100505|Q9C026|TRIM9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7630004882812 2 630.812664 1259.61078 NaN NaN NaN NaN NaN NaN NaN 123.99 1 119.42 118.92 119.92 -4.5757 0 0 0 0.22566 1 24447 24447 16.149 1.7437 1 54932 12255 36299 36320 53760 53760 -0.008645154968689894 YLDNVIGHSY 10 Unmodified _YLDNVIGHSY_ 0 0 0 TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6;ENST00000473131.5_1_20:5924535-5931132:-|nuORF TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2745971679688 2 590.785296 1179.55604 0.79105 0.00046734 -0.34299 -0.00020264 0.44805 0.0002647 590.7850204362092 101.56 0.87643 101.56 101.12 101.99 0 73 24 5 0 0 0 5.3843E-07 1 19993 19993 151.48 101.55 1 39060000 54933 1756 36300 36321 53761 53761 -0.02655766253269576 YLDNVIGHSY 10 Unmodified _YLDNVIGHSY_ 0 0 0 TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6;ENST00000473131.5_1_20:5924535-5931132:-|nuORF TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2485961914062 2 590.785296 1179.55604 0.16946 0.00010012 0.16711 9.8727E-05 0.33657 0.00019884 590.7853246783048 105.96 0.76998 101.7 101.27 102.04 -4.2638 69 21 4 0 0 0 0.050138 1 20806 20806 121.53 77.676 1 34086000 54934 1756 36300 36321 53762 53762 -0.02655766253269576 YLDNVIGHSY 10 Unmodified _YLDNVIGHSY_ 0 0 0 TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6;ENST00000473131.5_1_20:5924535-5931132:-|nuORF TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.248291015625 2 590.785296 1179.55604 0.46392 0.00027408 -0.16296 -9.6276E-05 0.30096 0.0001778 590.7851317914724 106.06 0.79829 101.69 101.26 102.06 -4.3764 74 22 4 0 0 0 4.3668E-12 1 20346 20346 154.75 101.35 1 36183000 54935 1756 36300 36321 53763 53763 -0.02655766253269576 YLDNVIGHSY 10 Unmodified _YLDNVIGHSY_ 0 0 0 TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6;ENST00000473131.5_1_20:5924535-5931132:-|nuORF TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2757568359375 2 590.785296 1179.55604 0.75189 0.00044421 -0.58188 -0.00034377 0.17001 0.00010044 590.7848864143456 105.78 1.1041 101.69 101.12 102.23 -4.0913 81 31 4 0 0 0 2.2712E-27 1 20357 20357 192.32 130.72 1 37183000 54936 1756 36300 36321 53764 53764 -0.02655766253269576 YLDPRITVA 9 Unmodified _YLDPRITVA_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.69873046875 2 524.295299 1046.57605 0.57297 0.00030041 -0.38714 -0.00020298 0.18583 9.743E-05 524.2950457374832 100.93 0.88112 100.93 100.48 101.36 0 68 24 4 0 0 0 0.52347 1 19847 19847 26.021 10.174 1 25607000 54937 7518 36301 36322 53765 53765 0.054620294773030764 YLDPRITVA 9 Unmodified _YLDPRITVA_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 524.295299 1046.57605 0.80798 0.00042362 -0.44957 -0.00023571 0.35842 0.00018792 524.2949880145298 104.86 1.0218 100.8 100.38 101.4 -4.0543 -0.06357 -3.2902E-05 NaN 26.021 76 28 4 NaN NaN NaN NaN 0 NaN NaN 0 23514000 54938 7518 36301 36322 0.054620294773030764 YLDQLRSSL 9 Unmodified _YLDQLRSSL_ 0 0 0 REV__nc|ENSG00000182871|P39060|COL18A1 REV__nc|ENSG00000182871|P39060|COL18A1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7927856445312 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 119.41 1 114.77 114.27 115.27 -4.645 0 0 0 0.23508 1 22918 22918 11.64 1.5664 1 + 54939 24201 36302 36323 53766 53766 0.03372824126381602 YLDSIPPGQY 10 Unmodified _YLDSIPPGQY_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3155517578125 2 576.782222 1151.54989 -0.10394 -5.9952E-05 0.38599 0.00022263 0.28205 0.00016268 576.7821689028159 113.59 0.60017 109.14 108.72 109.32 -4.4539 24 16 2 0 0 0 0.37773 1 22361 22361 32.305 17.724 1 1371300 54940 6059 36303 36324 53767 53767 -0.019822844848022214 YLDSIPPGQY 10 Unmodified _YLDSIPPGQY_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3189086914062 2 576.782222 1151.54989 -0.15814 -9.1212E-05 0.1629 9.3958E-05 0.0047595 2.7452E-06 576.7822843095423 112.87 1.0876 108.41 107.67 108.76 -4.4538 40 30 2 0 0 0 0.37929 1 22236 22236 46.021 29.079 1 1814400 54941 6059 36303 36324 53768 53768 -0.019822844848022214 YLDSIPPGQY 10 Unmodified _YLDSIPPGQY_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3124389648438 2 576.782222 1151.54989 0.59054 0.00034061 -0.302 -0.00017419 0.28854 0.00016642 576.7820251626063 112.52 1.2561 108.25 107.59 108.85 -4.2725 49 35 2 0 0 0 0.48338 1 21694 21694 39.957 3.8303 1 1425600 54942 6059 36303 36324 53769 53769 -0.019822844848022214 YLDTINRSV 9 Unmodified _YLDTINRSV_ 0 0 0 ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39;ENST00000465282.5_1_2:85839448-85850777:+|nuORF;ENST00000459775.5_1_2:85830068-85850777:+|nuORF ENST00000493829.5_1_2:85843459-85872221:+|nuORF ENST00000493829.5_1_2:85843459-85872221:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2784423828125 2 540.787838 1079.56112 0.13787 7.456E-05 0.24788 0.00013405 0.38576 0.00020861 540.7877948696911 75.167 0.38055 71.802 71.521 71.902 -3.3643 15 10 2 0 0 0 0.24263 1 14660 14660 34.932 4.2955 1 1199200 54943 5942 36304 36325 53770 53770 0.024525376093151863 YLDYALKWLAR 11 Unmodified _YLDYALKWLAR_ 0 0 0 REV__ENSG00000162851|ENST00000366514|TFB2M REV__ENSG00000162851|ENST00000366514|TFB2M MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 471.2619934082031 3 471.2626 1410.76597 NaN NaN NaN NaN NaN NaN NaN 157.32 1 152.53 152.03 153.03 -4.7885 0 0 0 0.22632 1 31284 31284 5.4027 2.3304 1 + 54944 17533 36305 36326 53771 53771 0.07701896419689547 YLDYLADGSY 10 Unmodified _YLDYLADGSY_ 0 0 0 REV__ENSG00000165566|ENST00000515384|AMER2 REV__ENSG00000165566|ENST00000515384|AMER2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2583618164062 2 590.263862 1178.51317 0.35723 0.00021086 -0.097258 -5.7408E-05 0.25997 0.00015345 590.2637130533932 85.538 0.84614 85.538 85.049 85.895 0 71 23 4 0 0 0 0.664 1 16618 16618 14.838 0.93222 1 30886000 + 54945 17782 36306 36327 53772 53772 -0.06894581101369113 YLEAAAKY 8 Unmodified _YLEAAAKY_ 0 0 0 ENSG00000168016|ENST00000645898|TRANK1;TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant;nc|ENSG00000168016|O15050|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 ENSG00000168016|ENST00000645898|TRANK1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.16363525390625 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 148.87 1 143.81 143.31 144.31 -5.0595 0 0 0 0.2396 1 28840 28840 0 0 1 54946 5869 36307 36328 53773 53773 0.003546936318457483 YLEEELVKA 9 Unmodified _YLEEELVKA_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7732543945312 2 547.292422 1092.57029 0.31958 0.0001749 -0.61674 -0.00033754 -0.29716 -0.00016263 547.2922125564724 99.685 0.384 95.728 95.52 95.904 -3.9564 16 10 2 0 0 0 0.4398 1 19144 19144 41.956 19.219 1 1040800 54947 1695 36308 36329 53774 53774 0.0277088617501704 YLEESLRPS 9 Unmodified _YLEESLRPS_ 0 0 0 REV__ENSG00000033100|ENST00000035307|CHPF2 REV__ENSG00000033100|ENST00000035307|CHPF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7909545898438 2 547.279846 1092.54514 0.31604 0.00017296 -3.3295 -0.0018222 -3.0135 -0.0016492 547.2779409219471 152.22 0.10965 147.47 147.39 147.5 -4.7523 4 2 2 0 0 0 0.64382 1 30236 30236 10.074 0.6908 1 730270 + 54948 14019 36309 36330 53775 53775 0.002568313724395921 YLEESLRPS 9 Unmodified _YLEESLRPS_ 0 0 0 REV__ENSG00000033100|ENST00000035307|CHPF2 REV__ENSG00000033100|ENST00000035307|CHPF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 547.279846 1092.54514 0.33368 0.00018262 3.557 0.0019467 3.8907 0.0021293 547.2799528717172 147.16 0.20981 147.16 147.01 147.22 0 -0.15324 0.0063616 NaN 10.074 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1491400 + 54949 14019 36309 36330 0.002568313724395921 YLEESLRPS 9 Unmodified _YLEESLRPS_ 0 0 0 REV__ENSG00000033100|ENST00000035307|CHPF2 REV__ENSG00000033100|ENST00000035307|CHPF2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 547.279846 1092.54514 0.31604 0.00017296 -3.3295 -0.0018222 -3.0135 -0.0016492 547.2779409219471 152.22 0.10965 147.47 147.39 147.5 -4.7523 0.15324 -0.0011761 NaN 10.074 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 730270 + 54950 14019 36309 36330 0.002568313724395921 YLELNHWRYIY 11 Unmodified _YLELNHWRYIY_ 0 0 0 ENST00000468057.5_1_1:205760663-205770562:-|nuORF;ENSG00000133065|ENST00000367137|SLC41A1 ENST00000468057.5_1_1:205760663-205770562:-|nuORF ENST00000468057.5_1_1:205760663-205770562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3975219726562 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 64.611 1 61.153 60.653 61.653 -3.4581 0 0 0 0.22632 1 12081 12081 0.094841 0 1 54951 3780 36310 36331 53776 53776 0.0159609344304954 YLELNHWRYIY 11 Unmodified _YLELNHWRYIY_ 0 0 0 ENST00000468057.5_1_1:205760663-205770562:-|nuORF;ENSG00000133065|ENST00000367137|SLC41A1 ENST00000468057.5_1_1:205760663-205770562:-|nuORF ENST00000468057.5_1_1:205760663-205770562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3955078125 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 65.542 1 62.084 61.584 62.584 -3.4581 0 0 0 0.22632 1 12268 12268 0.094841 0 1 54952 3780 36310 36331 53777 53777 0.0159609344304954 YLELNHWRYIY 11 Unmodified _YLELNHWRYIY_ 0 0 0 ENST00000468057.5_1_1:205760663-205770562:-|nuORF;ENSG00000133065|ENST00000367137|SLC41A1 ENST00000468057.5_1_1:205760663-205770562:-|nuORF ENST00000468057.5_1_1:205760663-205770562:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3968505859375 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 133.18 1 128.38 127.88 128.88 -4.799 0 0 0 0.22632 1 25634 25634 0.094841 0.094841 1 54953 3780 36310 36331 53778 53778 0.0159609344304954 YLENGKETL 9 Unmodified _YLENGKETL_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-F|p.R202C|1|0.35|ENSG00000204642|chr6:29724442-29724442|C/T|missense_variant;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204642|ENST00000259951|HLA-F ENSG00000206503|ENST00000376809|HLA-A;ENSG00000204642|ENST00000259951|HLA-F ENSG00000206503|ENST00000376809|HLA-A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2799072265625 2 533.774396 1065.53424 0.41643 0.00022228 -1.2423 -0.00066312 -0.82588 -0.00044083 533.7741556039772 55.388 0.55527 52.253 52.028 52.583 -3.1352 28 15 3 0 0 0 0.23009 1 10238 10238 40.239 17.503 1 4274600 54954 7670;7601 36311 36332 53779 53779 0.004094289981594557 YLENGKETL 9 Unmodified _YLENGKETL_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-F|p.R202C|1|0.35|ENSG00000204642|chr6:29724442-29724442|C/T|missense_variant;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204642|ENST00000259951|HLA-F ENSG00000206503|ENST00000376809|HLA-A;ENSG00000204642|ENST00000259951|HLA-F ENSG00000206503|ENST00000376809|HLA-A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2691650390625 2 533.774396 1065.53424 0.044366 2.3682E-05 -0.56233 -0.00030016 -0.51796 -0.00027648 533.774070121064 55.467 0.54952 52.33 52.075 52.625 -3.1377 24 15 2 0 0 0 0.23009 1 10308 10308 33.445 15.299 1 3493700 54955 7670;7601 36311 36332 53780 53780 0.004094289981594557 YLEPFHAFA 9 Unmodified _YLEPFHAFA_ 0 0 0 REV__AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant REV__AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7667846679688 2 547.768917 1093.52328 NaN NaN NaN NaN NaN NaN NaN 161.56 1 156.77 156.27 157.27 -4.7898 0 0 0 0.23508 1 32131 32131 8.5933 0.68312 1 + 54956 13091 36312 36333 53781 53781 -0.019739285854711852 YLEQLNSL 8 Unmodified _YLEQLNSL_ 0 0 0 REV__LRRN1|p.N168Ifs*3|3|0.27|ENSG00000175928|chr3:3845139-3845139|A/-|frameshift_variant REV__LRRN1|p.N168Ifs*3|3|0.27|ENSG00000175928|chr3:3845139-3845139|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25823974609375 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 116.31 1 111.95 111.45 112.45 -4.3585 0 0 0 0.18417 1 22391 22391 30.225 0 1 + 54957 18327 36313 36334 53782 53782 0.012100613149868877 YLERTTRLDRQ 11 Unmodified _YLERTTRLDRQ_ 0 0 0 REV__tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1 REV__tr|U7SJL4|U7SJL4_FUSNUMembranefusionproteinbiotin-lipoyllikedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02097PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 725.8906860351562 2 725.891689 1449.76882 NaN NaN NaN NaN NaN NaN NaN 177.94 1 173.07 172.57 173.57 -4.8686 0 0 0 0.22632 1 35419 35419 1.4074 0.82212 1 + 54958 24922 36314 36335 53783 53783 0.06193119806539471 YLFHIWGQRWY 11 Unmodified _YLFHIWGQRWY_ 0 0 0 SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant;nc|ENSG00000106868|Q6UWL2-3|SUSD1;ENSG00000106868|ENST00000374270|SUSD1;nc|ENSG00000106868|Q6UWL2-2|SUSD1 SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6814575195312 3 523.598094 1567.77245 NaN NaN NaN NaN NaN NaN NaN 122.29 1 117.76 117.26 118.26 -4.5305 0 0 0 0.23698 1 23544 23544 2.6312 1.5215 1 54959 2408 36315 36336 53784 53784 0.011278343710728223 YLFHQHQL 8 Unmodified _YLFHQHQL_ 0 0 0 CHD2|p.D1266Mfs*19|1|0.06|ENSG00000173575|chr15:92997311-92997312|-/AC|frameshift_variant;nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2;CHD2|p.L972Ffs*26|1|0.45|ENSG00000173575|chr15:92980849-92980850|-/T|frameshift_variant CHD2|p.D1266Mfs*19|1|0.06|ENSG00000173575|chr15:92997311-92997312|-/AC|frameshift_variant CHD2|p.D1266Mfs*19|1|0.06|ENSG00000173575|chr15:92997311-92997312|-/AC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7927856445312 2 543.279983 1084.54541 0.14457 7.854E-05 1.6073 0.0008732 1.7518 0.00095174 543.7822624017472 97.967 1.0674 94.048 93.398 94.466 -3.9194 54 30 2 0 0 0 0.72861 1 18721 18721 10.183 0.83596 1 2086000 54960 512 36316 36337 53785 53785 0.006522958829464187 YLFHQHQL 8 Unmodified _YLFHQHQL_ 0 0 0 CHD2|p.D1266Mfs*19|1|0.06|ENSG00000173575|chr15:92997311-92997312|-/AC|frameshift_variant;nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2;CHD2|p.L972Ffs*26|1|0.45|ENSG00000173575|chr15:92980849-92980850|-/T|frameshift_variant CHD2|p.D1266Mfs*19|1|0.06|ENSG00000173575|chr15:92997311-92997312|-/AC|frameshift_variant CHD2|p.D1266Mfs*19|1|0.06|ENSG00000173575|chr15:92997311-92997312|-/AC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.782470703125 2 543.279983 1084.54541 0.50908 0.00027658 1.1084 0.00060218 1.6175 0.00087876 543.7823645216583 101.44 0.17835 97.449 97.381 97.559 -3.9895 7 4 2 0 0 0 8448 1 19497 19497 0.68139 0.66813 1 687650 54961 512 36316 36337 53786 53786 0.006522958829464187 YLFLSMLAS 9 Unmodified _YLFLSMLAS_ 0 0 0 nc|ENSG00000176748|P0C646|OR52Z1P nc|ENSG00000176748|P0C646|OR52Z1P nc|ENSG00000176748|P0C646|OR52Z1P MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2595825195312 2 522.775354 1043.53615 -0.38793 -0.0002028 -0.10372 -5.4222E-05 -0.49165 -0.00025702 522.7751563413561 23.334 0.4077 21.546 21.292 21.699 -1.7886 18 11 2 0 0 0 0.87634 1 3750 3750 6.7232 0 1 593740 54962 12482 36317 36338 53787 53787 0.016127664823898158 YLGDGPKLV 9 Unmodified _YLGDGPKLV_ 0 0 0 ENST00000434820.1_1_2:17566863-17567166:+|nuORF;ENST00000555787.1_1_14:90734518-90735894:+|nuORF;ENST00000405257.1_1_6:4703010-4703685:+|nuORF;nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1 ENST00000434820.1_1_2:17566863-17567166:+|nuORF ENST00000434820.1_1_2:17566863-17567166:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.254150390625 2 481.271293 960.528032 NaN NaN NaN NaN NaN NaN NaN 95.18 1 91.299 90.799 91.799 -3.881 0 0 0 0.19006 1 18263 18263 24.991 3.2443 1 54963 2012 36318 36339 53788 53788 0.04618955557282334 YLGGGQVG 8 Unmodified _YLGGGQVG_ 0 0 0 ENST00000601500.1_1_5:50674257-50674491:-|nuORF ENST00000601500.1_1_5:50674257-50674491:-|nuORF ENST00000601500.1_1_5:50674257-50674491:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 752.4013671875 1 750.37808 749.370804 0.40768 0.00030592 -0.20477 -0.00015366 0.20291 0.00015226 750.3777929864348 54.121 2.2034 51.237 50.872 53.076 -2.8837 143 63 3 0 0 0 0.72861 1 10396 10396 10.183 0.83596 1 28481000 54964 11705 36319 36340 53789 53789 -0.013907042622349763 YLGIVCTPVE 10 Unmodified _YLGIVCTPVE_ 0 0 0 REV__ENST00000398197.6_1_6:121482190-121544486:-|nuORF REV__ENST00000398197.6_1_6:121482190-121544486:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7852783203125 2 547.283543 1092.55253 0.26316 0.00014402 0.27942 0.00015292 0.54258 0.00029694 547.2835606715479 103.38 0.53238 99.031 98.75 99.283 -4.346 24 14 2 0 0 0 0.57735 1 19829 19829 20.454 0.039092 1 1990100 + 54965 21325 36320 36341 53790 53790 0.009958476484825951 YLGPHIASV 9 Unmodified _YLGPHIASV_ 0 0 0 ENSG00000062716|ENST00000262291|VMP1 ENSG00000062716|ENST00000262291|VMP1 ENSG00000062716|ENST00000262291|VMP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.72222900390625 2 478.763635 955.512717 -0.12141 -5.8127E-05 0.0071283 3.4128E-06 -0.11428 -5.4714E-05 478.76360667686794 96.46 0.55296 96.46 96.045 96.598 0 28 15 2 0 0 0 0.033228 1 18899 18899 89.427 57.31 1 13699000 54966 1324 36321 36342 53791 53791 0.03318088760090632 YLGPHIASV 9 Unmodified _YLGPHIASV_ 0 0 0 ENSG00000062716|ENST00000262291|VMP1 ENSG00000062716|ENST00000262291|VMP1 ENSG00000062716|ENST00000262291|VMP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7218933105469 2 478.763635 955.512717 0.034581 1.6556E-05 -0.031707 -1.518E-05 0.0028744 1.3762E-06 478.7635758043244 100.51 0.58968 96.352 95.94 96.529 -4.1594 31 16 2 0 0 0 0.0277 1 19727 19727 97.075 47.142 1 13364000 54967 1324 36321 36342 53792 53792 0.03318088760090632 YLGPHIASV 9 Unmodified _YLGPHIASV_ 0 0 0 ENSG00000062716|ENST00000262291|VMP1 ENSG00000062716|ENST00000262291|VMP1 ENSG00000062716|ENST00000262291|VMP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7227783203125 2 478.763635 955.512717 0.27818 0.00013318 -0.2018 -9.6615E-05 0.076374 3.6565E-05 478.7634688540578 100.62 0.61813 96.323 95.851 96.469 -4.297 32 17 2 0 0 0 0.033228 1 19265 19265 89.427 53.383 1 13701000 54968 1324 36321 36342 53793 53793 0.03318088760090632 YLGPHIASV 9 Unmodified _YLGPHIASV_ 0 0 0 ENSG00000062716|ENST00000262291|VMP1 ENSG00000062716|ENST00000262291|VMP1 ENSG00000062716|ENST00000262291|VMP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7227783203125 2 478.763635 955.512717 0.29598 0.0001417 -0.21251 -0.00010174 0.083469 3.9962E-05 478.76349832588596 100.24 0.60979 96.251 95.871 96.48 -3.9895 32 17 2 0 0 0 0.033228 1 19294 19294 77.984 47.76 1 14537000 54969 1324 36321 36342 53794 53794 0.03318088760090632 YLGQWDYQCRC 11 Unmodified _YLGQWDYQCRC_ 0 0 0 REV__JAG1|p.G256D|1|0.2|ENSG00000101384|chr20:10652587-10652587|C/T|missense_variant REV__JAG1|p.G256D|1|0.2|ENSG00000101384|chr20:10652587-10652587|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7356262207031 3 478.869157 1433.58564 NaN NaN NaN NaN NaN NaN NaN 14.091 1 14.091 13.591 14.591 0 0 0 0 0.22632 1 2078 2078 0.094841 0 1 + 54970 23689 36322 36343 53795 53795 -0.11380893571117667 YLGRNKKT 8 Unmodified _YLGRNKKT_ 0 0 0 REV__ENST00000474481.1_1_1:1421456-1424590:+|nuORF REV__ENST00000474481.1_1_1:1421456-1424590:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25994873046875 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 133.37 1 128.55 128.05 129.05 -4.8175 0 0 0 0.23749 1 25670 25670 0.0082765 0 1 + 54971 17391 36323 36344 53796 53796 0.07092582399980074 YLGTQPDY 8 Unmodified _YLGTQPDY_ 0 0 0 REV__nc|ENSG00000182872|P98175-4|RBM10 REV__nc|ENSG00000182872|P98175-4|RBM10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7227783203125 2 478.721633 955.428712 0.26124 0.00012506 1.1737 0.00056187 1.4349 0.00068693 478.7221066101205 100.27 1.156 95.974 95.278 96.434 -4.297 62 33 2 0 0 0 0.69887 1 19265 19265 14.582 0 1 4408700 + 54972 18806 36324 36345 53797 53797 -0.050784871274800025 YLGTQPDY 8 Unmodified _YLGTQPDY_ 0 0 0 REV__nc|ENSG00000182872|P98175-4|RBM10 REV__nc|ENSG00000182872|P98175-4|RBM10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7227783203125 2 478.721633 955.428712 0.25542 0.00012228 1.1505 0.00055078 1.4059 0.00067305 478.7220278604925 99.806 1.4084 95.817 95.107 96.516 -3.9895 76 40 2 0 0 0 0.69887 1 19294 19294 14.582 0 1 4247500 + 54973 18806 36324 36345 53798 53798 -0.050784871274800025 YLHAGPPPPP 10 Unmodified _YLHAGPPPPP_ 0 0 0 REV__nc|ENSG00000150275|Q96QU1-6|PCDH15 REV__nc|ENSG00000150275|Q96QU1-6|PCDH15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6839599609375 2 523.276909 1044.53927 0.69583 0.00036411 -1.2469 -0.00065248 -0.55108 -0.00028837 523.7782558171727 23.745 1.3923 22.192 21.763 23.155 -1.5532 126 39 5 0 0 0 0.29069 1 4264 4264 49.669 15.566 1 19149000 + 54974 17025 36325 36346 53799 53799 0.01877777651429824 YLHAGPPPPP 10 Unmodified _YLHAGPPPPP_ 0 0 0 REV__nc|ENSG00000150275|Q96QU1-6|PCDH15 REV__nc|ENSG00000150275|Q96QU1-6|PCDH15 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6966552734375 2 523.276909 1044.53927 -0.60012 -0.00031403 -0.096066 -5.0269E-05 -0.69619 -0.0003643 523.7787818289657 23.654 1.7693 22.2 21.405 23.175 -1.4535 154 50 5 0 0 0 0.29069 1 3957 3957 49.669 15.566 1 20670000 + 54975 17025 36325 36346 53800 53800 0.01877777651429824 YLHAGPPPPP 10 Unmodified _YLHAGPPPPP_ 0 0 0 REV__nc|ENSG00000150275|Q96QU1-6|PCDH15 REV__nc|ENSG00000150275|Q96QU1-6|PCDH15 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.696533203125 2 523.276909 1044.53927 -0.28883 -0.00015114 -0.20145 -0.00010542 -0.49029 -0.00025656 523.7787668913365 23.967 1.3842 22.178 21.628 23.012 -1.7886 123 39 5 0 0 0 0.14055 1 4006 4006 49.669 7.5744 1 17350000 + 54976 17025 36325 36346 53801 53801 0.01877777651429824 YLHCRKKPDPH 11 Unmodified _YLHCRKKPDPH_ 0 0 0 REV__ENSG00000156140|ENST00000286657|ADAMTS3 REV__ENSG00000156140|ENST00000286657|ADAMTS3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25 3 465.243434 1392.70847 NaN NaN NaN NaN NaN NaN NaN 64.414 1 61.157 60.657 61.657 -3.2567 0 0 0 0.22632 1 12093 12093 0.03141 0 1 + 54977 17247 36326 36347 53802 53802 0.02782730942476519 YLHCRKKPDPH 11 Unmodified _YLHCRKKPDPH_ 0 0 0 REV__ENSG00000156140|ENST00000286657|ADAMTS3 REV__ENSG00000156140|ENST00000286657|ADAMTS3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24346923828125 3 465.243434 1392.70847 NaN NaN NaN NaN NaN NaN NaN 162.7 1 157.51 157.01 158.01 -5.1878 0 0 0 0.22632 1 31606 31606 0.026206 0 1 + 54978 17247 36326 36347 53803 53803 0.02782730942476519 YLHFLIFL 8 Unmodified _YLHFLIFL_ 0 0 0 nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9;ABCA9|p.P1249Qfs*18|1|0.17|ENSG00000154258|chr17:68990930-68990930|A/-|frameshift_variant nc|ENSG00000154258|Q8IUA7-4|ABCA9 nc|ENSG00000154258|Q8IUA7-4|ABCA9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2813110351562 2 533.310221 1064.60589 NaN NaN NaN NaN NaN NaN NaN 160.23 1 154.97 154.47 155.47 -5.2526 0 0 0 0.21486 1 31094 31094 11.114 0 1 54979 5003 36327 36348 53804 53804 0.07617013213325663 YLHFPTFHA 9 Unmodified _YLHFPTFHA_ 0 0 0 CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant;nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5 CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 378.1905822753906 3 378.190665 1131.55016 NaN NaN NaN NaN NaN NaN NaN 134.6 1 129.96 129.46 130.46 -4.6399 0 0 0 0.23508 1 26545 26545 1.1933 0.41681 1 54980 604 36328 36349 53805 53805 -0.01034819974279344 YLHRRTGY 8 Unmodified _YLHRRTGY_ 0 0 0 REV__nc|ENSG00000064666|Q99439-2|CNN2 REV__nc|ENSG00000064666|Q99439-2|CNN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2750244140625 2 533.283057 1064.55156 NaN NaN NaN NaN NaN NaN NaN 98.653 1 94.384 93.884 94.884 -4.2692 0 0 0 0.22665 1 18862 18862 11.999 5.8072 1 + 54981 14171 36329 36350 53806 53806 0.021868141144750552 YLHRRTGY 8 Unmodified _YLHRRTGY_ 0 0 0 REV__nc|ENSG00000064666|Q99439-2|CNN2 REV__nc|ENSG00000064666|Q99439-2|CNN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28271484375 2 533.283057 1064.55156 NaN NaN NaN NaN NaN NaN NaN 98.746 1 94.477 93.977 94.977 -4.2692 0 0 0 0.18898 1 18876 18876 28.487 10.114 1 + 54982 14171 36329 36350 53807 53807 0.021868141144750552 YLHYPASSCGF 11 Unmodified _YLHYPASSCGF_ 0 0 0 ENSG00000198390|ENST00000355459|KRTAP13-1 ENSG00000198390|ENST00000355459|KRTAP13-1 ENSG00000198390|ENST00000355459|KRTAP13-1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7730712890625 2 622.773874 1243.53319 NaN NaN NaN NaN NaN NaN NaN 100.32 1 96.025 95.525 96.525 -4.297 0 0 0 0.23264 1 19185 19185 6.2058 0.47393 1 54983 7448 36330 36351 53808 53808 -0.07883108642408843 YLIEGEKQ 8 Unmodified _YLIEGEKQ_ 0 0 0 REV__ENST00000527169.5_1_11:93471375-93471492:-|nuORF REV__ENST00000527169.5_1_11:93471375-93471492:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2712097167969 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 34.796 1 32.543 32.043 33.043 -2.2527 0 0 0 0.23538 1 6111 6111 1.7423 0 1 + 54984 22700 36331 36352 53809 53809 0.012100613149982564 YLIFFRRQWKR 11 Unmodified _YLIFFRRQWKR_ 0 0 0 REV__ENSG00000133030|ENST00000651222|MPRIP REV__ENSG00000133030|ENST00000651222|MPRIP MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 538.278076171875 3 538.312288 1611.91504 NaN NaN NaN NaN NaN NaN NaN 138.94 1 134.3 133.8 134.8 -4.6439 0 0 0 0.22632 1 27437 27437 0.026206 0 1 + 54985 16150 36332 36353 53810 53810 0.13355466833081664 YLIFKQKKETA 11 Unmodified _YLIFKQKKETA_ 0 0 0 REV__ENST00000429685.1_1_2:203044091-203044292:+|nuORF REV__ENST00000429685.1_1_2:203044091-203044292:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 456.9217529296875 3 456.934372 1367.78129 NaN NaN NaN NaN NaN NaN NaN 10.053 1 9.2583 8.7583 9.7583 -0.79424 0 0 0 0.23698 1 1220 1220 0.08335 0 1 + 54986 21603 36333 36354 53811 53811 0.11210763216899977 YLIGGDVKSL 10 Unmodified _YLIGGDVKSL_ 0 0 0 nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL;MASTL|p.I458Nfs*5|1|0.32|ENSG00000120539|chr10:27170324-27170325|-/A|frameshift_variant;MASTL|p.N564Ifs*4|1|0.29|ENSG00000120539|chr10:27170646-27170646|A/-|frameshift_variant;MASTL|p.N228Ifs*28|2|0.5|ENSG00000120539|chr10:27165405-27165405|A/-|frameshift_variant;MASTL|p.K391Nfs*12|2|0.25|ENSG00000120539|chr10:27170127-27170127|A/-|frameshift_variant nc|ENSG00000120539|Q96GX5-2|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.270263671875 2 532.802957 1063.59136 0.31899 0.00016996 -1.0988 -0.00058543 -0.77978 -0.00041547 532.8026272848699 121.02 0.39168 116.5 116.31 116.7 -4.5221 14 10 2 0 0 0 0.25854 1 23881 23881 25.997 18.52 1 1397100 54987 3140 36334 36355 53812 53812 0.062108962745242025 YLIGGDVKSL 10 Unmodified _YLIGGDVKSL_ 0 0 0 nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL;MASTL|p.I458Nfs*5|1|0.32|ENSG00000120539|chr10:27170324-27170325|-/A|frameshift_variant;MASTL|p.N564Ifs*4|1|0.29|ENSG00000120539|chr10:27170646-27170646|A/-|frameshift_variant;MASTL|p.N228Ifs*28|2|0.5|ENSG00000120539|chr10:27165405-27165405|A/-|frameshift_variant;MASTL|p.K391Nfs*12|2|0.25|ENSG00000120539|chr10:27170127-27170127|A/-|frameshift_variant nc|ENSG00000120539|Q96GX5-2|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2728271484375 2 532.802957 1063.59136 0.99156 0.00052831 -1.5699 -0.00083645 -0.57834 -0.00030814 532.8024005431624 121.16 0.52605 116.47 116.17 116.7 -4.6873 19 14 2 0 0 0 0.15354 2 23253 23253;23283 37.771 27.621 1 1239300 54988 3140 36334 36355 53813;53814 53813 0.062108962745242025 YLIIIVLV 8 Unmodified _YLIIIVLV_ 0 0 0 REV__tr|U7T5W5|U7T5W5_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00155PE=4SV=1 REV__tr|U7T5W5|U7T5W5_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00155PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 473.3214111328125 2 473.322797 944.631041 NaN NaN NaN NaN NaN NaN NaN 169.33 1 164.54 164.04 165.04 -4.7898 0 0 0 0.21486 1 34296 34296 0.79363 0 1 + 54989 25428 36335 36356 53815 53815 0.1565106801588172 YLIKLIQKQLL 11 Unmodified _YLIKLIQKQLL_ 0 0 0 REV__IPO8|p.F208L|1|0.24|ENSG00000133704|chr12:30680497-30680497|A/C|missense_variant REV__IPO8|p.F208L|1|0.24|ENSG00000133704|chr12:30680497-30680497|A/C|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2377014160156 3 458.302396 1371.88536 0.35332 0.00016193 0.46921 0.00021504 0.82254 0.00037697 458.30266014148367 117.65 0.49313 113.04 112.85 113.35 -4.6106 19 13 2 0 0 0 0.96192 1 22586 22586 1.3296 0 1 1457100 + 54990 23668 36336 36357 53816 53816 0.21429090044421173 YLIREFKRRLQ 11 Unmodified _YLIREFKRRLQ_ 0 0 0 REV__HDAC8|p.R164Q|1|0.17|ENSG00000147099|chrX:72495215-72495215|C/T|missense_variant REV__HDAC8|p.R164Q|1|0.17|ENSG00000147099|chrX:72495215-72495215|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.21160888671875 4 381.230768 1520.89397 0.29296 0.00011169 -0.47044 -0.00017935 -0.17748 -6.7662E-05 381.2305492421807 30.155 0.62749 28.038 27.701 28.329 -2.1167 20 17 2 0 0 0 0.66155 1 5439 5439 0.172 0 1 828670 + 54991 23605 36337 36358 53817 53817 0.15435456733598585 YLIRRLLF 8 Unmodified _YLIRRLLF_ 0 0 0 REV__AluJb_dup105930|chr17:16441567-16441818:-|1.0179588767749213|0.4201583608019265|1.28|482.0|18|3|anti-sense REV__AluJb_dup105930|chr17:16441567-16441818:-|1.0179588767749213|0.4201583608019265|1.28|482.0|18|3|anti-sense MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7740478515625 2 547.347669 1092.68079 0.33383 0.00018272 -0.075533 -4.1343E-05 0.2583 0.00014138 547.3497292450974 148 0.16739 148 147.95 148.12 0 6 4 2 0 0 0 0.89712 1 29636 29636 0.62683 0.56284 1 1481200 + 54992 13017 36338 36359 53818 53818 0.13815195744541597 YLISLLKVVLV 11 Unmodified _YLISLLKVVLV_ 0 0 0 REV__ENSG00000172954|ENST00000379509|LCLAT1 REV__ENSG00000172954|ENST00000379509|LCLAT1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7717895507812 2 630.4205 1258.82645 NaN NaN NaN NaN NaN NaN NaN 46.865 1 46.865 46.365 47.365 0 0 0 0 0.22632 1 8831 8831 0 0 1 + 54993 18318 36339 36360 53819 53819 0.2073861375006345 YLKANEVDL 9 Unmodified _YLKANEVDL_ 0 0 0 REV__ENST00000472587.5_1_21:43696971-43716499:+|nuORF REV__ENST00000472587.5_1_21:43696971-43716499:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.270263671875 2 532.784764 1063.55498 -0.062151 -3.3113E-05 -0.098414 -5.2434E-05 -0.16057 -8.5547E-05 532.7848736708258 71.328 1.7032 68.079 67.67 69.374 -3.2492 161 47 6 0 0 0 0.053942 3 14070 14070;14077;14149 69.105 10.943 1 699790000 + 54994 17396 36340 36361 53820;53821;53822 53820 0.025740193777892273 YLKANEVDL 9 Unmodified _YLKANEVDL_ 0 0 0 REV__ENST00000472587.5_1_21:43696971-43716499:+|nuORF REV__ENST00000472587.5_1_21:43696971-43716499:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.286865234375 2 532.784764 1063.55498 0.70174 0.00037387 -0.85297 -0.00045445 -0.15123 -8.0575E-05 532.7844869102879 71.704 1.8591 68.076 67.664 69.523 -3.6275 172 51 6 0 0 0 0.39189 1 13750 13750 26.268 0.86883 1 588630000 + 54995 17396 36340 36361 53823 53823 0.025740193777892273 YLKANEVDL 9 Unmodified _YLKANEVDL_ 0 0 0 REV__ENST00000472587.5_1_21:43696971-43716499:+|nuORF REV__ENST00000472587.5_1_21:43696971-43716499:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2861938476562 2 532.784764 1063.55498 0.41023 0.00021857 -0.67486 -0.00035955 -0.26462 -0.00014099 532.7845820580405 71.57 2.546 68.103 67.767 70.314 -3.4671 199 72 6 0 0 0 0.15274 1 13848 13848 43.772 3.5332 1 604140000 + 54996 17396 36340 36361 53824 53824 0.025740193777892273 YLKEQAEFL 9 Unmodified _YLKEQAEFL_ 0 0 0 REV__ENST00000526890.5_1_11:3022346-3038536:-|nuORF REV__ENST00000526890.5_1_11:3022346-3038536:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2043762207031 3 380.869368 1139.58628 -0.20398 -7.7689E-05 2.2707 0.00086483 2.0667 0.00078714 380.87063057882614 80.68 0.52284 77.123 76.919 77.442 -3.557 23 14 2 0 0 0 0.6797 1 15759 15759 7.609 1.4171 1 1049200 + 54997 15206 36341 36362 53825 53825 0.022065924119033298 YLKEQAEFL 9 Unmodified _YLKEQAEFL_ 0 0 0 REV__ENST00000526890.5_1_11:3022346-3038536:-|nuORF REV__ENST00000526890.5_1_11:3022346-3038536:-|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 380.869368 1139.58628 -0.88227 -0.00033603 2.6812 0.0010212 1.7989 0.00068515 380.8707858357158 80.958 0.5238 77.27 76.966 77.49 -3.6879 0.073347 0.00013012 NaN 7.609 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 623660 + 54998 15206 36341 36362 0.022065924119033298 YLKGQLPLL 9 Unmodified _YLKGQLPLL_ 0 0 0 ENSG00000142677|ENST00000270800|IL22RA1 ENSG00000142677|ENST00000270800|IL22RA1 ENSG00000142677|ENST00000270800|IL22RA1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.281005859375 2 522.826235 1043.63792 -0.051336 -2.684E-05 0.69764 0.00036474 0.6463 0.0003379 522.8266354088497 155.69 0.98914 150.91 150.41 151.4 -4.7791 52 27 3 0 0 0 0.32599 1 30956 30956 44.407 21.259 1 2339700 54999 4438 36342 36363 53826 53826 0.11784380896460789 YLKGSTDISGY 11 Unmodified _YLKGSTDISGY_ 0 0 0 tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2982788085938 2 602.298236 1202.58192 NaN NaN NaN NaN NaN NaN NaN 101.46 1 101.46 100.96 101.96 0 0 0 0 0.22775 1 19916 19916 10.074 1.4806 1 55000 26403 36343 36364 53827 53827 -0.011269168016497133 YLKGVGQY 8 Unmodified _YLKGVGQY_ 0 0 0 ENST00000564704.5_1_16:67272241-67289541:+|nuORF ENST00000564704.5_1_16:67272241-67289541:+|nuORF ENST00000564704.5_1_16:67272241-67289541:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16973876953125 3 309.835999 926.486168 -0.4295 -0.00013308 -0.16321 -5.0567E-05 -0.59271 -0.00018364 309.8358106566397 42.116 0.20778 39.397 39.277 39.485 -2.7191 9 5 2 0 0 0 0.73936 1 7869 7869 6.2058 2.2614 1 511010 55001 11347 36344 36365 53828 53828 0.01998399868762135 YLKKLKVKK 9 Unmodified _YLKKLKVKK_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;PARP1|p.S507Afs*17|2|0.28|ENSG00000143799|chr1:226379946-226379946|T/-|frameshift_variant;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant;PARP1|p.E360Rfs*29|1|0.22|ENSG00000143799|chr1:226383118-226383119|-/G|frameshift_variant ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 574.4013671875 2 574.399902 1146.78525 NaN NaN NaN NaN NaN NaN NaN 179.28 1 174.37 173.87 174.87 -4.9114 0 0 0 0.19635 1 35772 35772 0 0 1 55002 4520 36345 36366 53829 53829 0.21772897501273292 YLKKLKVKKQD 11 Unmodified _YLKKLKVKKQD_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;PARP1|p.S507Afs*17|2|0.28|ENSG00000143799|chr1:226379946-226379946|T/-|frameshift_variant;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant;PARP1|p.E360Rfs*29|1|0.22|ENSG00000143799|chr1:226383118-226383119|-/G|frameshift_variant ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 695.94287109375 2 695.942662 1389.87077 NaN NaN NaN NaN NaN NaN NaN 179.36 1 174.45 173.95 174.95 -4.9114 0 0 0 0.22632 1 35788 35788 0 0 1 55003 4520 36346 36367 53830 53830 0.19143017896271886 YLKKRKFHLRK 11 Unmodified _YLKKRKFHLRK_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 506.3255615234375 3 506.324417 1515.95142 NaN NaN NaN NaN NaN NaN NaN 168.31 1 168.31 167.81 168.81 0 0 0 0 0.22632 1 34460 34460 0.094841 0 1 55004 8872 36347 36368 53831 53831 0.21408343729831358 YLKKWSAKG 9 Unmodified _YLKKWSAKG_ 0 0 0 ENST00000563645.1_1_16:19514794-19516450:-|nuORF;ENSG00000006007|ENST00000353258|GDE1 ENST00000563645.1_1_16:19514794-19516450:-|nuORF ENST00000563645.1_1_16:19514794-19516450:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 540.8151245117188 2 540.813659 1079.61277 NaN NaN NaN NaN NaN NaN NaN 169.97 1 165.18 164.68 165.68 -4.7898 0 0 0 0.19684 1 34469 34469 1.2148 1.1416 1 55005 1002 36348 36369 53832 53832 0.07614326093880663 YLKLRNWQWWR 11 Unmodified _YLKLRNWQWWR_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion;ENST00000473022.1_1_22:36698592-36700051:-|nuORF;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11 ENSG00000100345|ENST00000216181|MYH9 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 549.8402099609375 3 550.30016 1647.87865 NaN NaN NaN NaN NaN NaN NaN 171.25 1 166.46 165.96 166.96 -4.7898 0 0 0 0.22632 1 34808 34808 0.094841 0.094841 1 55006 1957;3798 36349 36370 53833 53833 0.08062589936389486 YLKQERDN 8 Unmodified _YLKQERDN_ 0 0 0 REV__ARHGAP35|p.H1355Y|1|0.41|ENSG00000160007|chr19:46999330-46999330|C/T|missense_variant REV__ARHGAP35|p.H1355Y|1|0.41|ENSG00000160007|chr19:46999330-46999330|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2702026367188 2 533.269813 1064.52507 NaN NaN NaN NaN NaN NaN NaN 150.37 1 145.64 145.14 146.14 -4.7323 0 0 0 0.23487 1 29866 29866 0.12286 0 1 + 55007 13101 36350 36371 53834 53834 -0.004609195675357114 YLKQQEEK 8 Unmodified _YLKQQEEK_ 0 0 0 REV__ENSG00000158669|ENST00000396987|GPAT4 REV__ENSG00000158669|ENST00000396987|GPAT4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2816162109375 2 533.282389 1064.55022 NaN NaN NaN NaN NaN NaN NaN 54.86 1 51.976 51.476 52.476 -2.8837 0 0 0 0.21452 1 10481 10481 13.508 3.3245 1 + 55008 17341 36351 36372 53835 53835 0.020531352350417365 YLKVLISNL 9 Unmodified _YLKVLISNL_ 0 0 0 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.267822265625 2 531.831517 1061.64848 0.074727 3.9742E-05 0.12023 6.3941E-05 0.19496 0.00010368 531.8315444563195 99.846 0.52386 95.713 95.372 95.896 -4.1326 33 14 3 0 0 0 0.59384 1 19605 19605 13.508 2.684 1 3215600 55009 26065 36352 36373 53836 53836 0.12012363550911687 YLKVLISNL 9 Unmodified _YLKVLISNL_ 0 0 0 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2636108398438 2 531.831517 1061.64848 0.58693 0.00031215 -0.34805 -0.00018511 0.23888 0.00012704 531.8312829745796 99.992 0.50415 95.695 95.45 95.954 -4.297 30 14 3 0 0 0 0.59384 1 19123 19123 13.508 0.97634 1 4051500 55010 26065 36352 36373 53837 53837 0.12012363550911687 YLKVLISNL 9 Unmodified _YLKVLISNL_ 0 0 0 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 531.831517 1061.64848 0.0038359 2.0401E-06 0.28033 0.00014909 0.28416 0.00015113 531.8317139001698 96.026 0.55407 96.026 95.766 96.32 0 0.2328 0.00035011 NaN 13.508 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3423300 55011 26065 36352 36373 0.12012363550911687 YLKVLISNL 9 Unmodified _YLKVLISNL_ 0 0 0 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 531.831517 1061.64848 0.29274 0.00015569 -0.16032 -8.5261E-05 0.13242 7.0426E-05 531.8314914749693 99.695 0.45506 95.739 95.482 95.937 -3.9564 -0.05448 -0.00011859 NaN 13.508 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4338000 55012 26065 36352 36373 0.12012363550911687 YLLCMMSL 8 Unmodified _YLLCMMSL_ 0 0 0 REV__ENST00000528611.1_1_1:39794090-39794144:+|nuORF REV__ENST00000528611.1_1_1:39794090-39794144:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 487.6304931640625 2 487.23141 972.448267 NaN NaN NaN NaN NaN NaN NaN 160.84 1 155.61 155.11 156.11 -5.2299 0 0 0 0.21486 1 31236 31236 10.183 0 1 + 55013 22727 36353 36374 53838 53838 -0.039058937042227626 YLLEKSRAV 9 Unmodified _YLLEKSRAV_ 0 0 0 MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10 MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.21307373046875 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 50.54 1 50.54 50.04 51.04 0 0 0 0 0.23508 1 9572 9572 5.4027 0.5057 1 55014 3776 36354 36375 53839 53839 0.0825400488570267 YLLENNVKEEQ 11 Unmodified _YLLENNVKEEQ_ 0 0 0 tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1 tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1 tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.23260498046875 3 460.233146 1377.67761 NaN NaN NaN NaN NaN NaN NaN 117.11 1 112.63 112.13 113.13 -4.486 0 0 0 0.22632 1 23088 23088 0.172 0 1 55015 26081 36355 36376 53840 53840 0.003878113185919574 YLLFFFNM 8 Unmodified _YLLFFFNM_ 0 0 0 ENSG00000158457|ENST00000486685|TSPAN33 ENSG00000158457|ENST00000486685|TSPAN33 ENSG00000158457|ENST00000486685|TSPAN33 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7880859375 2 547.772614 1093.53067 NaN NaN NaN NaN NaN NaN NaN 161.98 1 156.79 156.29 157.29 -5.1878 0 0 0 0.21486 1 31443 31443 9.3474 0.75416 1 55016 5165 36356 36377 53841 53841 -0.012349123094054448 YLLFFYVHLIL 11 Unmodified _YLLFFYVHLIL_ 0 0 0 nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1;ENST00000462375.5_1_9:134385592-134386855:+|nuORF;POMT1|p.L421*|1|0.41|ENSG00000130714|chr9:131515440-131515440|C/-|frameshift_variant nc|ENSG00000130714|Q9Y6A1-4|POMT1 nc|ENSG00000130714|Q9Y6A1-4|POMT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2359924316406 3 480.947842 1439.8217 NaN NaN NaN NaN NaN NaN NaN 119.88 1 115.41 114.91 115.91 -4.467 0 0 0 0.22632 1 23078 23078 0.50596 0 1 55017 3629 36357 36378 53842 53842 0.11937729607348047 YLLFILYHQAL 11 Unmodified _YLLFILYHQAL_ 0 0 0 nc|ENSG00000115339|Q14435-2|GALNT3 nc|ENSG00000115339|Q14435-2|GALNT3 nc|ENSG00000115339|Q14435-2|GALNT3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.25433349609375 3 465.267463 1392.78056 NaN NaN NaN NaN NaN NaN NaN 145.43 1 140.76 140.26 141.26 -4.6694 0 0 0 0.22632 1 28829 28829 3.0723 3.043 1 55018 12291 36358 36379 53843 53843 0.09987968567838834 YLLIYLHHTLW 11 Unmodified _YLLIYLHHTLW_ 0 0 0 REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 491.2756652832031 3 491.274729 1470.80236 NaN NaN NaN NaN NaN NaN NaN 157.98 1 153.19 152.69 153.69 -4.792 0 0 0 0.22632 1 31418 31418 0.0059557 0.0053913 1 + 55019 16420 36359 36380 53844 53844 0.0857877331641248 YLLKESDSM 9 Unmodified _YLLKESDSM_ 0 0 0 SLC12A1|p.D285Y|1|0.07|ENSG00000074803|chr15:48229317-48229317|G/T|missense_variant SLC12A1|p.D285Y|1|0.07|ENSG00000074803|chr15:48229317-48229317|G/T|missense_variant SLC12A1|p.D285Y|1|0.07|ENSG00000074803|chr15:48229317-48229317|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.780517578125 2 543.262807 1084.51106 0.14094 7.6565E-05 -0.62335 -0.00033864 -0.48241 -0.00026208 543.2624427763134 88.261 0.789 84.469 84.301 85.09 -3.7926 34 21 2 0 0 0 0.79204 1 17324 17324 16.942 7.5592 1 1739500 55020 25667 36360 36381 53845 53845 -0.027813331108291095 YLLKESDSM 9 Unmodified _YLLKESDSM_ 0 0 0 SLC12A1|p.D285Y|1|0.07|ENSG00000074803|chr15:48229317-48229317|G/T|missense_variant SLC12A1|p.D285Y|1|0.07|ENSG00000074803|chr15:48229317-48229317|G/T|missense_variant SLC12A1|p.D285Y|1|0.07|ENSG00000074803|chr15:48229317-48229317|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7805786132812 2 543.262807 1084.51106 0.40264 0.00021874 -1.3142 -0.00071396 -0.91157 -0.00049522 543.262151510234 88.792 0.31296 84.797 84.736 85.049 -3.9953 11 8 2 0 0 0 0.79204 1 16922 16922 16.942 4.4107 1 1231500 55021 25667 36360 36381 53846 53846 -0.027813331108291095 YLLKESDSM 9 Unmodified _YLLKESDSM_ 0 0 0 SLC12A1|p.D285Y|1|0.07|ENSG00000074803|chr15:48229317-48229317|G/T|missense_variant SLC12A1|p.D285Y|1|0.07|ENSG00000074803|chr15:48229317-48229317|G/T|missense_variant SLC12A1|p.D285Y|1|0.07|ENSG00000074803|chr15:48229317-48229317|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78076171875 2 543.262807 1084.51106 0.27796 0.00015101 -0.22301 -0.00012115 0.054954 2.9854E-05 543.262616752477 88.244 0.73424 84.494 84.292 85.026 -3.7501 27 20 2 0 0 0 0.79204 1 16925 16925 16.942 4.4107 1 1824200 55022 25667 36360 36381 53847 53847 -0.027813331108291095 YLLKHQAAHA 10 Unmodified _YLLKHQAAHA_ 0 0 0 ENSG00000261221|ENST00000568956|ZNF865 ENSG00000261221|ENST00000568956|ZNF865 ENSG00000261221|ENST00000568956|ZNF865 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3209228515625 2 576.31964 1150.62473 NaN NaN NaN NaN NaN NaN NaN 153.46 1 148.2 147.7 148.7 -5.2669 0 0 0 2.8426 1 29745 29745 0.063865 0 1 55023 7958 36361 36382 53848 53848 0.055439428370846144 YLLKTKLSE 9 Unmodified _YLLKTKLSE_ 0 0 0 nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4 nc|ENSG00000112769|Q16363-2|LAMA4 nc|ENSG00000112769|Q16363-2|LAMA4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7784423828125 2 547.826432 1093.63831 NaN NaN NaN NaN NaN NaN NaN 9.924 1 8.8653 8.3653 9.3653 -1.0587 0 0 0 0.23508 1 1042 1042 0 0 1 55024 2710 36362 36383 53849 53849 0.09523755825625813 YLLLIVKIL 9 Unmodified _YLLLIVKIL_ 0 0 0 ENST00000426918.2_1_9:125719318-125748500:+|nuORF;ENST00000373647.8_1_9:125719318-125746770:+|nuORF ENST00000426918.2_1_9:125719318-125748500:+|nuORF ENST00000426918.2_1_9:125719318-125748500:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 363.5205078125 3 363.254494 1086.74165 NaN NaN NaN NaN NaN NaN NaN 16.718 1 15.502 15.002 16.002 -1.2159 0 0 0 0.1963 1 2645 2645 0.0033805 0 1 55025 9203 36363 36384 53850 53850 0.20175288004134018 YLLLKLALVT 10 Unmodified _YLLLKLALVT_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 382.9004211425781 3 382.921404 1145.74238 NaN NaN NaN NaN NaN NaN NaN 9.5558 1 9.5558 9.0558 10.056 0 0 0 0 0.22588 1 1118 1118 0 0 1 + 55026 15935 36364 36385 53851 53851 0.17534082653151017 YLLLLLAL 8 Unmodified _YLLLLLAL_ 0 0 0 REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 311.2113952636719 3 311.212407 930.615391 NaN NaN NaN NaN NaN NaN NaN 107.76 1 103.63 103.13 104.13 -4.135 0 0 0 0.21486 1 20730 20730 0 0 1 + 55027 12880 36365 36386 53852 53852 0.14730781498838041 YLLLLLLLL 9 Unmodified _YLLLLLLLL_ 0 0 0 REV__ENSG00000182578|ENST00000675795|CSF1R REV__ENSG00000182578|ENST00000675795|CSF1R MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7774658203125 2 543.880479 1085.74641 0.16823 9.1495E-05 2.279 0.0012395 2.4472 0.001331 544.3848733063908 153.82 0.20682 148.56 148.4 148.61 -5.2669 7 5 2 0 0 0 0.65565 1 29804 29804 0 0 1 1178400 + 55028 18788 36366 36387 53853 53853 0.20696172146904246 YLLLLLLLL 9 Unmodified _YLLLLLLLL_ 0 0 0 REV__ENSG00000182578|ENST00000675795|CSF1R REV__ENSG00000182578|ENST00000675795|CSF1R MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7738647460938 2 543.880479 1085.74641 NaN NaN NaN NaN NaN NaN NaN 132.81 1 128.01 127.51 128.51 -4.799 0 0 0 0.23508 1 25561 25561 0.6015 0 1 + 55029 18788 36366 36387 53854 53854 0.20696172146904246 YLLLLTLAAV 10 Unmodified _YLLLLTLAAV_ 0 0 0 REV__CHPF|p.A540V|1|0.35|ENSG00000123989|chr2:219540092-219540092|G/A|missense_variant REV__CHPF|p.A540V|1|0.35|ENSG00000123989|chr2:219540092-219540092|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.91455078125 3 363.902121 1088.68453 NaN NaN NaN NaN NaN NaN NaN 10.67 1 10.67 10.17 11.17 0 0 0 0 0.22588 1 1350 1350 0 0 1 + 55030 13409 36367 36388 53855 53855 0.14373820727723796 YLLLLTLAAV 10 Unmodified _YLLLLTLAAV_ 0 0 0 REV__CHPF|p.A540V|1|0.35|ENSG00000123989|chr2:219540092-219540092|G/A|missense_variant REV__CHPF|p.A540V|1|0.35|ENSG00000123989|chr2:219540092-219540092|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.90167236328125 3 363.902121 1088.68453 NaN NaN NaN NaN NaN NaN NaN 10.754 1 10.754 10.254 11.254 0 0 0 0 0.22588 1 1367 1367 0 0 1 + 55031 13409 36367 36388 53856 53856 0.14373820727723796 YLLLLTLAAV 10 Unmodified _YLLLLTLAAV_ 0 0 0 REV__CHPF|p.A540V|1|0.35|ENSG00000123989|chr2:219540092-219540092|G/A|missense_variant REV__CHPF|p.A540V|1|0.35|ENSG00000123989|chr2:219540092-219540092|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.9143371582031 3 363.902121 1088.68453 NaN NaN NaN NaN NaN NaN NaN 11.005 1 11.005 10.505 11.505 0 0 0 0 0.22588 1 1426 1426 0 0 1 + 55032 13409 36367 36388 53857 53857 0.14373820727723796 YLLLLTLAAV 10 Unmodified _YLLLLTLAAV_ 0 0 0 REV__CHPF|p.A540V|1|0.35|ENSG00000123989|chr2:219540092-219540092|G/A|missense_variant REV__CHPF|p.A540V|1|0.35|ENSG00000123989|chr2:219540092-219540092|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 363.90179443359375 3 363.902121 1088.68453 NaN NaN NaN NaN NaN NaN NaN 11.559 1 11.559 11.059 12.059 0 0 0 0 0.22588 1 1541 1541 0 0 1 + 55033 13409 36367 36388 53858 53858 0.14373820727723796 YLLMATRLL 9 Unmodified _YLLMATRLL_ 0 0 0 REV__sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1 REV__sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7783813476562 2 547.325545 1092.63654 0.0044093 2.4133E-06 -1.1378 -0.00062275 -1.1334 -0.00062034 547.8261379259505 65.709 0.20798 65.709 65.552 65.759 0 8 5 2 0 0 0 0.45972 1 12682 12682 8.1555 1.9497 1 1308100 + 55034 24688 36368 36389 53859 53859 0.09392423536064598 YLLMEQLAN 9 Unmodified _YLLMEQLAN_ 0 0 0 TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B;nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;TBC1D8B|p.V302Kfs*5|1|0.05|ENSG00000133138|chrX:106826105-106826106|-/AAAATGG|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7801513671875 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 113.49 1 113.49 112.99 113.99 0 0 0 0 0.21848 1 22316 22316 18.135 2.2878 1 55035 3788 36369 36390 53860 53860 0.004749635057123669 YLLRKQKRR 9 Unmodified _YLLRKQKRR_ 0 0 0 ENSG00000175229|ENST00000312006|GAL3ST3 ENSG00000175229|ENST00000312006|GAL3ST3 ENSG00000175229|ENST00000312006|GAL3ST3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7566528320312 2 630.904205 1259.79386 NaN NaN NaN NaN NaN NaN NaN 159.13 1 154.33 153.83 154.83 -4.7952 0 0 0 0.19626 1 31641 31641 0.0033805 0.0033805 1 55036 6395 36370 36391 53861 53861 0.17435264190430644 YLLRSAHFS 9 Unmodified _YLLRSAHFS_ 0 0 0 REV__ENST00000300584.7_1_15:78295800-78305260:-|nuORF REV__ENST00000300584.7_1_15:78295800-78305260:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7919311523438 2 547.293091 1092.57163 0.22016 0.00012049 -1.0199 -0.00055817 -0.79971 -0.00043768 547.2927586428044 99.743 0.3875 95.61 95.405 95.793 -4.1326 17 10 3 0 0 0 0.34411 1 19579 19579 29.082 7.3349 1 1150800 + 55037 20402 36371 36392 53862 53862 0.029045650544276214 YLLRSAHFS 9 Unmodified _YLLRSAHFS_ 0 0 0 REV__ENST00000300584.7_1_15:78295800-78305260:-|nuORF REV__ENST00000300584.7_1_15:78295800-78305260:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.79296875 2 547.293091 1092.57163 0.31958 0.0001749 -1.8386 -0.0010062 -1.519 -0.00083134 547.2922125564724 99.685 0.384 95.728 95.52 95.904 -3.9564 16 10 2 0 0 0 0.2219 1 19157 19157 36.127 7.0454 1 1040800 + 55038 20402 36371 36392 53863 53863 0.029045650544276214 YLLRYPIW 8 Unmodified _YLLRYPIW_ 0 0 0 ZFAND4|p.L299Wfs*73|1|0.08|ENSG00000172671|chr10:45626927-45626927|A/-|frameshift_variant ZFAND4|p.L299Wfs*73|1|0.08|ENSG00000172671|chr10:45626927-45626927|A/-|frameshift_variant ZFAND4|p.L299Wfs*73|1|0.08|ENSG00000172671|chr10:45626927-45626927|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2132568359375 3 375.21481 1122.6226 NaN NaN NaN NaN NaN NaN NaN 12.175 1 11.165 10.665 11.665 -1.0098 0 0 0 0.2396 1 1668 1668 0 0 1 55039 26597 36372 36393 53864 53864 0.06619514099247681 YLLSRGQED 9 Unmodified _YLLSRGQED_ 0 0 0 ENST00000498159.1_1_3:157287125-157287392:+|nuORF ENST00000498159.1_1_3:157287125-157287392:+|nuORF ENST00000498159.1_1_3:157287125-157287392:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2717895507812 2 540.769645 1079.52474 0.25984 0.00014051 0.16616 8.9852E-05 0.426 0.00023037 540.7697093500044 62.164 0.48984 59.203 58.937 59.427 -2.9614 23 13 3 0 0 0 0.15214 1 11987 11987 43.858 5.6827 1 1667500 55040 10598 36373 36394 53865 53865 -0.011843392873743142 YLLSRGQED 9 Unmodified _YLLSRGQED_ 0 0 0 ENST00000498159.1_1_3:157287125-157287392:+|nuORF ENST00000498159.1_1_3:157287125-157287392:+|nuORF ENST00000498159.1_1_3:157287125-157287392:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 540.769645 1079.52474 0.22683 0.00012266 0.16721 9.0424E-05 0.39404 0.00021309 540.7694839515873 62.577 0.51912 59.181 58.934 59.453 -3.3959 -0.014047 -0.0001504 NaN 43.858 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1445600 55041 10598 36373 36394 -0.011843392873743142 YLLVNAFVNV 10 Unmodified _YLLVNAFVNV_ 0 0 0 NRCAM|p.A443V|1|0.53|ENSG00000091129|chr7:108197979-108197979|G/A|missense_variant NRCAM|p.A443V|1|0.53|ENSG00000091129|chr7:108197979-108197979|G/A|missense_variant NRCAM|p.A443V|1|0.53|ENSG00000091129|chr7:108197979-108197979|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3275146484375 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 151.71 1 151.71 151.21 152.21 0 0 0 0 2.8426 1 30387 30387 1.9275 0.71267 1 55042 12708 36374 36395 53866 53866 0.06935175545504535 YLLVNNRIF 9 Unmodified _YLLVNNRIF_ 0 0 0 ENST00000261778.1_1_16:69118402-69118879:+|nuORF ENST00000261778.1_1_16:69118402-69118879:+|nuORF ENST00000261778.1_1_16:69118402-69118879:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3320922851562 2 576.332216 1150.64988 NaN NaN NaN NaN NaN NaN NaN 156.8 1 151.51 151.01 152.01 -5.2854 0 0 0 0.17788 1 30422 30422 2.6312 0.70373 1 55043 8306 36375 36396 53867 53867 0.08057997639639325 YLLYIIIKI 9 Unmodified _YLLYIIIKI_ 0 0 0 REV__RBM44|p.I38Nfs*44|1|0.32|ENSG00000177483|chr2:237821162-237821163|-/A|frameshift_variant REV__RBM44|p.I38Nfs*44|1|0.32|ENSG00000177483|chr2:237821162-237821163|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3265991210938 2 576.375561 1150.73657 NaN NaN NaN NaN NaN NaN NaN 128 1 128 127.5 128.5 0 0 0 0 0.23508 1 25275 25275 2.3027 0.4585 1 + 55044 24551 36376 36397 53868 53868 0.16722984141506458 YLLYIIIKI 9 Unmodified _YLLYIIIKI_ 0 0 0 REV__RBM44|p.I38Nfs*44|1|0.32|ENSG00000177483|chr2:237821162-237821163|-/A|frameshift_variant REV__RBM44|p.I38Nfs*44|1|0.32|ENSG00000177483|chr2:237821162-237821163|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3115844726562 2 576.375561 1150.73657 NaN NaN NaN NaN NaN NaN NaN 138.45 1 133.81 133.31 134.31 -4.6413 0 0 0 0.23508 1 27335 27335 0.6015 0 1 + 55045 24551 36376 36397 53869 53869 0.16722984141506458 YLMEGSYNKV 10 Unmodified _YLMEGSYNKV_ 0 0 0 ENST00000592001.5_1_19:38865430-38871817:+|nuORF;ENSG00000099341|ENST00000215071|PSMD8 ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENST00000592001.5_1_19:38865430-38871817:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2898559570312 2 602.289356 1202.56416 0.58041 0.00034957 -0.029309 -1.7653E-05 0.5511 0.00033192 602.2890722555608 83.09 0.52042 83.09 82.806 83.326 0 21 14 2 0 0 0 0.12513 1 16219 16219 53.404 21.099 1 2447600 55046 1889 36377 36398 53870 53870 -0.029019553281614208 YLMEGSYNKV 10 Unmodified _YLMEGSYNKV_ 0 0 0 ENST00000592001.5_1_19:38865430-38871817:+|nuORF;ENSG00000099341|ENST00000215071|PSMD8 ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENST00000592001.5_1_19:38865430-38871817:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2896728515625 2 602.289356 1202.56416 0.94996 0.00057215 -0.8201 -0.00049394 0.12986 7.8215E-05 602.288925654748 87.024 0.52953 83.297 83.044 83.574 -3.727 30 14 3 0 0 0 0.072734 3 17032 16988;17032;17063 74.2 32.36 1 3310400 55047 1889 36377 36398 53871;53872;53873 53872 -0.029019553281614208 YLMEGSYNKV 10 Unmodified _YLMEGSYNKV_ 0 0 0 ENST00000592001.5_1_19:38865430-38871817:+|nuORF;ENSG00000099341|ENST00000215071|PSMD8 ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENST00000592001.5_1_19:38865430-38871817:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2894287109375 2 602.289356 1202.56416 0.64962 0.00039126 -0.50073 -0.00030158 0.14889 8.9674E-05 602.2891416202236 87.145 0.56622 83.194 82.926 83.492 -3.9503 30 15 3 0 0 0 0.029144 2 16616 16573;16616 70.332 56.421 1 3139900 55048 1889 36377 36398 53874;53875 53875 -0.029019553281614208 YLMEGSYNKV 10 Unmodified _YLMEGSYNKV_ 0 0 0 ENST00000592001.5_1_19:38865430-38871817:+|nuORF;ENSG00000099341|ENST00000215071|PSMD8 ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENST00000592001.5_1_19:38865430-38871817:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.289306640625 2 602.289356 1202.56416 0.1962 0.00011817 -0.083981 -5.0581E-05 0.11222 6.7587E-05 602.289252265392 86.974 0.49142 83.245 82.943 83.435 -3.7289 24 13 2 0 0 0 0.12513 1 16640 16640 53.404 21.099 1 3615800 55049 1889 36377 36398 53876 53876 -0.029019553281614208 YLMEHTEIAP 10 Unmodified _YLMEHTEIAP_ 0 0 0 REV__EDEM3|p.K381Nfs*22|2|0.29|ENSG00000116406|chr1:184719180-184719180|T/-|frameshift_variant REV__EDEM3|p.K381Nfs*22|2|0.29|ENSG00000116406|chr1:184719180-184719180|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2763671875 2 602.289356 1202.56416 0.64962 0.00039126 -0.50073 -0.00030158 0.14889 8.9674E-05 602.2891416202236 87.145 0.56622 83.194 82.926 83.492 -3.9503 30 15 3 0 0 0 0.67319 1 16645 16645 13.906 0.29118 1 3139900 + 55050 13774 36378 36399 53877 53877 -0.029019553281614208 YLMELTLSFS 10 Unmodified _YLMELTLSFS_ 0 0 0 REV__ENST00000367334.9_1_1:201104596-201104782:-|nuORF REV__ENST00000367334.9_1_1:201104596-201104782:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.3008422851562 2 602.301933 1202.58931 NaN NaN NaN NaN NaN NaN NaN 95.176 1 91.126 90.626 91.626 -4.0496 0 0 0 0.22544 1 18653 18653 19.257 2.1441 1 + 55051 20918 36379 36400 53878 53878 -0.003879005255839729 YLMKRRWKKNF 11 Unmodified _YLMKRRWKKNF_ 0 0 0 ENSG00000101306|ENST00000375985|MYLK2 ENSG00000101306|ENST00000375985|MYLK2 ENSG00000101306|ENST00000375985|MYLK2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3955078125 2 785.44538 1568.87621 NaN NaN NaN NaN NaN NaN NaN 117.74 1 117.74 117.24 118.24 0 0 0 0 0.22632 1 23193 23193 0.026206 0.025642 1 55052 2055 36380 36401 53879 53879 0.11452418207068149 YLMKRRWKKNF 11 Unmodified _YLMKRRWKKNF_ 0 0 0 ENSG00000101306|ENST00000375985|MYLK2 ENSG00000101306|ENST00000375985|MYLK2 ENSG00000101306|ENST00000375985|MYLK2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.395751953125 2 785.44538 1568.87621 NaN NaN NaN NaN NaN NaN NaN 122.08 1 117.55 117.05 118.05 -4.5305 0 0 0 0.23698 1 23503 23503 1.3295 0 1 55053 2055 36380 36401 53880 53880 0.11452418207068149 YLMPRKLRPHW 11 Unmodified _YLMPRKLRPHW_ 0 0 0 REV__ENST00000500337.6_1_5:43453974-43454076:-|nuORF REV__ENST00000500337.6_1_5:43453974-43454076:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21148681640625 4 374.963137 1495.82344 -0.81311 -0.00030489 1.4604 0.0005476 0.64729 0.00024271 374.96412742037467 15.425 0.17301 14.311 14.167 14.34 -1.1142 7 4 2 0 0 0 0.82662 1 2367 2367 0.094841 0 1 464050 + 55054 22425 36381 36402 53881 53881 0.09536460144272496 YLNDFTHEI 9 Unmodified _YLNDFTHEI_ 0 0 0 ENSG00000095574|ENST00000368886|IKZF5 ENSG00000095574|ENST00000368886|IKZF5 ENSG00000095574|ENST00000368886|IKZF5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.323974609375 2 576.272021 1150.52949 0.2871 0.00016545 -0.11165 -6.4341E-05 0.17545 0.0001011 576.2718197974901 119.52 0.59019 119.52 119.2 119.79 0 27 16 2 0 0 0 0.17935 2 23566 23566;23582 39.95 13.682 1 4525800 55055 1864 36382 36403 53882;53883 53882 -0.03975455144609441 YLNDFTHEI 9 Unmodified _YLNDFTHEI_ 0 0 0 ENSG00000095574|ENST00000368886|IKZF5 ENSG00000095574|ENST00000368886|IKZF5 ENSG00000095574|ENST00000368886|IKZF5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.317626953125 2 576.272021 1150.52949 0.17871 0.00010298 -0.13612 -7.8444E-05 0.042583 2.4539E-05 576.2719055060014 124.06 0.63078 119.48 119.17 119.8 -4.5757 29 17 2 0 0 0 0.10573 1 24466 24466 53.833 21.047 1 4967900 55056 1864 36382 36403 53884 53884 -0.03975455144609441 YLNDFTHEI 9 Unmodified _YLNDFTHEI_ 0 0 0 ENSG00000095574|ENST00000368886|IKZF5 ENSG00000095574|ENST00000368886|IKZF5 ENSG00000095574|ENST00000368886|IKZF5 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3370361328125 2 576.272021 1150.52949 0.51063 0.00029426 -0.078993 -4.5521E-05 0.43164 0.00024874 576.2718551565724 124.35 0.6702 119.58 119.18 119.85 -4.7681 41 18 3 0 0 0 0.23492 1 23844 23844 53.833 21.047 1 4491700 55057 1864 36382 36403 53885 53885 -0.03975455144609441 YLNDFTHEI 9 Unmodified _YLNDFTHEI_ 0 0 0 ENSG00000095574|ENST00000368886|IKZF5 ENSG00000095574|ENST00000368886|IKZF5 ENSG00000095574|ENST00000368886|IKZF5 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3126831054688 2 576.272021 1150.52949 0.26448 0.00015241 0.17917 0.00010325 0.44365 0.00025566 576.2719713284304 124.11 0.64456 119.52 119.23 119.88 -4.5926 44 17 3 0 0 0 0.16619 1 23884 23884 41.84 14.211 1 5453100 55058 1864 36382 36403 53886 53886 -0.03975455144609441 YLNEIKDSV 9 Unmodified _YLNEIKDSV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2841796875 2 540.782222 1079.54989 0.21133 0.00011428 -0.0082375 -4.4547E-06 0.20309 0.00010983 540.7821014821556 81.443 0.44733 77.886 77.689 78.136 -3.557 21 12 2 0 0 0 0.33094 1 15887 15887 29.841 2.2118 1 1702600 55059 5830 36383 36404 53887 53887 0.013297155152031337 YLNEKAVSY 9 Unmodified _YLNEKAVSY_ 0 0 0 ENST00000531771.5_1_11:85718509-85733504:-|nuORF;PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant;nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM ENST00000531771.5_1_11:85718509-85733504:-|nuORF ENST00000531771.5_1_11:85718509-85733504:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7749633789062 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 63.038 1 59.782 59.282 60.282 -3.2567 0 0 0 0.19721 1 11826 11826 24.021 0.87215 1 55060 1490 36384 36405 53888 53888 -2.2671392343909247E-05 YLNEKAVSY 9 Unmodified _YLNEKAVSY_ 0 0 0 ENST00000531771.5_1_11:85718509-85733504:-|nuORF;PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant;nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM ENST00000531771.5_1_11:85718509-85733504:-|nuORF ENST00000531771.5_1_11:85718509-85733504:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7869873046875 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 63.141 1 59.884 59.384 60.384 -3.2567 0 0 0 0.19721 1 11848 11848 24.021 1.2843 1 55061 1490 36384 36405 53889 53889 -2.2671392343909247E-05 YLNELSEPV 9 Unmodified _YLNELSEPV_ 0 0 0 REV__ENSG00000138031|ENST00000679454|ADCY3 REV__ENSG00000138031|ENST00000679454|ADCY3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.28466796875 2 532.268947 1062.52334 0.45809 0.00024383 -0.15318 -8.1533E-05 0.30491 0.00016229 532.268827079523 141.6 0.86823 136.61 136.24 137.11 -4.9877 59 24 3 0 0 0 0.1793 1 27221 27221 39.957 0.0076237 1 14002000 + 55062 16428 36385 36406 53890 53890 -0.005419733761300449 YLNESIDKV 9 Unmodified _YLNESIDKV_ 0 0 0 REV__WRN|p.L285V|1|0.2|ENSG00000165392|chr8:31080880-31080880|C/G|missense_variant REV__WRN|p.L285V|1|0.2|ENSG00000165392|chr8:31080880-31080880|C/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.284423828125 2 540.782222 1079.54989 0.11926 6.4493E-05 0.15796 8.5421E-05 0.27722 0.00014991 540.782034291695 81.804 0.5181 77.965 77.678 78.196 -3.8392 26 14 3 0 0 0 0.36931 1 15525 15525 27.629 0.40557 1 1054300 + 55063 25545 36386 36407 53891 53891 0.013297155152031337 YLNHLEPPV 9 Unmodified _YLNHLEPPV_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;NPLOC4|p.F249Lfs*88|1|0.11|ENSG00000182446|chr17:81604635-81604635|A/-|frameshift_variant ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2692260742188 2 541.287474 1080.5604 0.71517 0.00038711 -0.26261 -0.00014215 0.45256 0.00024496 541.287036121917 102.31 1.1171 102.31 101.78 102.9 0 82 31 3 0 0 0 0.2219 1 20150 20150 36.127 1.7253 1 5532500 55064 6789 36387 36408 53892 53892 0.023337429602634074 YLNHLEPPV 9 Unmodified _YLNHLEPPV_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;NPLOC4|p.F249Lfs*88|1|0.11|ENSG00000182446|chr17:81604635-81604635|A/-|frameshift_variant ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.269287109375 2 541.287474 1080.5604 -0.16247 -8.7943E-05 0.31049 0.00016806 0.14802 8.0119E-05 541.2875445074028 106.7 1.115 102.43 101.83 102.95 -4.2638 71 31 3 0 0 0 0.36034 1 20973 20973 43.858 19.838 1 4820800 55065 6789 36387 36408 53893 53893 0.023337429602634074 YLNHLEPPV 9 Unmodified _YLNHLEPPV_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;NPLOC4|p.F249Lfs*88|1|0.11|ENSG00000182446|chr17:81604635-81604635|A/-|frameshift_variant ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.269287109375 2 541.287474 1080.5604 0.072506 3.9247E-05 0.017597 9.5249E-06 0.090103 4.8772E-05 541.2873856995545 106.65 0.93472 102.27 101.86 102.79 -4.3764 60 26 3 0 0 0 0.52242 1 20416 20416 36.127 17.981 1 4506000 55066 6789 36387 36408 53894 53894 0.023337429602634074 YLNHLEPPV 9 Unmodified _YLNHLEPPV_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;NPLOC4|p.F249Lfs*88|1|0.11|ENSG00000182446|chr17:81604635-81604635|A/-|frameshift_variant ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2694091796875 2 541.287474 1080.5604 0.80783 0.00043727 -0.65651 -0.00035536 0.15133 8.1911E-05 541.2869710654467 106.36 1.1339 102.27 101.85 102.99 -4.0913 72 32 3 0 0 0 0.23744 1 20473 20473 52.268 17.867 1 4978800 55067 6789 36387 36408 53895 53895 0.023337429602634074 YLNNMEVE 8 Unmodified _YLNNMEVE_ 0 0 0 tr|U7T340|U7T340_FUSNUCRP/FNRfamilytranscriptionalregulator,anaerobicregulatoryproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00378PE=4SV=1 tr|U7T340|U7T340_FUSNUCRP/FNRfamilytranscriptionalregulator,anaerobicregulatoryproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00378PE=4SV=1 tr|U7T340|U7T340_FUSNUCRP/FNRfamilytranscriptionalregulator,anaerobicregulatoryproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00378PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 506.58538818359375 2 506.226225 1010.4379 NaN NaN NaN NaN NaN NaN NaN 164.44 1 159.38 158.88 159.88 -5.0648 0 0 0 0.22834 1 32069 32069 0.12286 0 1 55068 26383 36388 36409 53896 53896 -0.06690461833443351 YLNRQDSSL 9 Unmodified _YLNRQDSSL_ 0 0 0 ENST00000565781.5_1_16:56533757-56533808:-|nuORF ENST00000565781.5_1_16:56533757-56533808:-|nuORF ENST00000565781.5_1_16:56533757-56533808:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7732543945312 2 548.275095 1094.53564 0.277 0.00015187 -0.74271 -0.00040721 -0.4657 -0.00025533 548.2745847506682 99.296 1.0381 95.339 94.899 95.937 -3.9564 46 25 2 0 0 0 0.6329 1 19144 19144 10.824 10.824 1 5680100 55069 11361 36389 36410 53897 53897 -0.00784936913078127 YLPDIIKDQKA 11 Unmodified _YLPDIIKDQKA_ 0 0 0 PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant;PPM1G|p.G393Afs*25|1|0.08|ENSG00000115241|chr2:27383389-27383389|C/-|frameshift_variant;ENSG00000115241|ENST00000344034|PPM1G PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 436.23223876953125 3 435.246727 1302.71835 0.16389 7.1332E-05 -0.20163 -8.776E-05 -0.037744 -1.6428E-05 435.2466031472211 98.576 0.72812 94.307 93.954 94.682 -4.2692 63 20 4 0 0 0 0.12917 1 18838 18838 48.475 32.264 1 10048000 55070 2835 36390 36411 53898 53898 0.07910197428850552 YLPDIIKDQKA 11 Unmodified _YLPDIIKDQKA_ 0 0 0 PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant;PPM1G|p.G393Afs*25|1|0.08|ENSG00000115241|chr2:27383389-27383389|C/-|frameshift_variant;ENSG00000115241|ENST00000344034|PPM1G PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 435.246727 1302.71835 -0.10146 -4.4161E-05 0.11385 4.9554E-05 0.012391 5.393E-06 435.24673026554933 98.408 0.7668 94.276 93.807 94.574 -4.1326 -0.065333 2.8187E-05 NaN 48.475 65 21 4 NaN NaN NaN NaN 0 NaN NaN 0 11194000 55071 2835 36390 36411 0.07910197428850552 YLPDIIKDQKA 11 Unmodified _YLPDIIKDQKA_ 0 0 0 PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant;PPM1G|p.G393Afs*25|1|0.08|ENSG00000115241|chr2:27383389-27383389|C/-|frameshift_variant;ENSG00000115241|ENST00000344034|PPM1G PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 435.246727 1302.71835 -0.099355 -4.3244E-05 0.24283 0.00010569 0.14348 6.2447E-05 435.24674608222347 98.198 0.77745 94.242 93.854 94.631 -3.9564 -0.099244 0.0001966 NaN 48.475 71 22 4 NaN NaN NaN NaN 0 NaN NaN 0 10929000 55072 2835 36390 36411 0.07910197428850552 YLPEDFIRV 9 Unmodified _YLPEDFIRV_ 0 0 0 IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant;IRAK2|p.Q391Sfs*2|1|0.38|ENSG00000134070|chr3:10222789-10222789|G/-|frameshift_variant;ENSG00000134070|ENST00000256458|IRAK2 IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3333129882812 2 576.308406 1150.60226 0.3048 0.00017566 -0.32475 -0.00018716 -0.01995 -1.1498E-05 576.3086569109263 163.55 0.40341 163.55 163.38 163.79 0 24 11 3 0 0 0 0.13932 2 32959 32959;33044 45.7 20.3 1 25527000 55073 3826 36391 36412 53899;53900 53899 0.03298298648792297 YLPEDFIRV 9 Unmodified _YLPEDFIRV_ 0 0 0 IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant;IRAK2|p.Q391Sfs*2|1|0.38|ENSG00000134070|chr3:10222789-10222789|G/-|frameshift_variant;ENSG00000134070|ENST00000256458|IRAK2 IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3135375976562 2 576.308406 1150.60226 0.22802 0.00013141 0.19697 0.00011351 0.42499 0.00024493 576.3091033104873 165.72 0.58026 160.93 160.68 161.26 -4.7898 26 16 2 0 0 0 0.13932 2 33191 33191;33263 45.7 16.618 1 14421000 55074 3826 36391 36412 53901;53902 53901 0.03298298648792297 YLPEDFIRV 9 Unmodified _YLPEDFIRV_ 0 0 0 IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant;IRAK2|p.Q391Sfs*2|1|0.38|ENSG00000134070|chr3:10222789-10222789|G/-|frameshift_variant;ENSG00000134070|ENST00000256458|IRAK2 IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3216552734375 2 576.308406 1150.60226 NaN NaN NaN NaN NaN NaN NaN 165.93 1 160.98 160.48 161.48 -4.9484 0 0 0 0.046541 1 32460 32460 53.833 13.883 1 55075 3826 36391 36412 53903 53903 0.03298298648792297 YLPEDFIRV 9 Unmodified _YLPEDFIRV_ 0 0 0 IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant;IRAK2|p.Q391Sfs*2|1|0.38|ENSG00000134070|chr3:10222789-10222789|G/-|frameshift_variant;ENSG00000134070|ENST00000256458|IRAK2 IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 576.308406 1150.60226 0.29993 0.00017285 -0.08897 -5.1274E-05 0.21096 0.00012158 576.3082489108732 165.84 0.45261 160.86 160.74 161.19 -4.9811 -0.033988 -0.00013722 NaN 45.7 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 14549000 55076 3826 36391 36412 0.03298298648792297 YLPGSHNK 8 Unmodified _YLPGSHNK_ 0 0 0 ENSG00000108242|ENST00000285979|CYP2C18 ENSG00000108242|ENST00000285979|CYP2C18 ENSG00000108242|ENST00000285979|CYP2C18 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2402038574219 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 91.459 1 87.651 87.151 88.151 -3.8083 0 0 0 0.21486 1 17510 17510 7.9102 2.1497 1 55077 2464 36392 36413 53904 53904 0.00036345066178000707 YLPKLLLRLPL 11 Unmodified _YLPKLLLRLPL_ 0 0 0 REV__OR51F1|p.L169R|1|0.16|ENSG00000280021|chr11:4769433-4769433|A/C|missense_variant REV__OR51F1|p.L169R|1|0.16|ENSG00000280021|chr11:4769433-4769433|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 670.2359619140625 2 669.947216 1337.87988 NaN NaN NaN NaN NaN NaN NaN 169.01 1 164.22 163.72 164.72 -4.7898 0 0 0 0.22632 1 34205 34205 0.00056442 0 1 + 55078 24409 36393 36414 53905 53905 0.22445411252601843 YLPPHYKEYY 10 Unmodified _YLPPHYKEYY_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H;FAM83H|p.G365Afs*180|1|0.14|ENSG00000180921|chr8:143728367-143728367|C/-|frameshift_variant ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22442626953125 3 458.223923 1371.64994 NaN NaN NaN NaN NaN NaN NaN 129.51 1 124.69 124.19 125.19 -4.817 0 0 0 2.8426 1 24863 24863 0.84494 0.81353 1 55079 6702 36394 36415 53906 53906 -0.021020471509700656 YLPPMAHFF 9 Unmodified _YLPPMAHFF_ 0 0 0 ENST00000413628.5_1_1:68568378-68586877:+|nuORF ENST00000413628.5_1_1:68568378-68586877:+|nuORF ENST00000413628.5_1_1:68568378-68586877:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2100830078125 3 374.852884 1121.53682 0.050824 1.9052E-05 -1.2124 -0.00045448 -1.1616 -0.00043543 374.8525053932629 76.06 0.66299 76.06 75.75 76.413 0 32 18 2 0 0 0 0.65387 1 14751 14751 9.3831 0.40688 1 1927100 55080 9592 36395 36416 53907 53907 -0.019083940778955366 YLPPMAHFF 9 Unmodified _YLPPMAHFF_ 0 0 0 ENST00000413628.5_1_1:68568378-68586877:+|nuORF ENST00000413628.5_1_1:68568378-68586877:+|nuORF ENST00000413628.5_1_1:68568378-68586877:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 374.852884 1121.53682 -0.19915 -7.4654E-05 -0.74958 -0.00028098 -0.94873 -0.00035563 374.8526253240465 79.704 0.67619 76.193 75.8 76.476 -3.5102 0.10735 0.00011127 NaN 9.3831 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3085800 55081 9592 36395 36416 -0.019083940778955366 YLPPMAHFF 9 Unmodified _YLPPMAHFF_ 0 0 0 ENST00000413628.5_1_1:68568378-68586877:+|nuORF ENST00000413628.5_1_1:68568378-68586877:+|nuORF ENST00000413628.5_1_1:68568378-68586877:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 374.852884 1121.53682 -0.053096 -1.9903E-05 -1.001 -0.00037522 -1.0541 -0.00039513 374.85243393719765 79.802 0.80864 75.997 75.58 76.388 -3.8048 -0.089119 -0.00017145 NaN 9.3831 48 22 3 NaN NaN NaN NaN 0 NaN NaN 0 2237600 55082 9592 36395 36416 -0.019083940778955366 YLPPMAHFF 9 Unmodified _YLPPMAHFF_ 0 0 0 ENST00000413628.5_1_1:68568378-68586877:+|nuORF ENST00000413628.5_1_1:68568378-68586877:+|nuORF ENST00000413628.5_1_1:68568378-68586877:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 374.852884 1121.53682 -0.8002 -0.00029996 -0.45385 -0.00017013 -1.254 -0.00047008 374.8527197459934 79.77 0.80282 76.094 75.62 76.423 -3.676 0.0075658 0.00044384 NaN 9.3831 38 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2412400 55083 9592 36395 36416 -0.019083940778955366 YLPRRRLI 8 Unmodified _YLPRRRLI_ 0 0 0 ENST00000296414.11_1_4:100787741-100789335:+|nuORF ENST00000296414.11_1_4:100787741-100789335:+|nuORF ENST00000296414.11_1_4:100787741-100789335:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78125 2 543.848368 1085.68218 NaN NaN NaN NaN NaN NaN NaN 129.18 1 124.44 123.94 124.94 -4.7408 0 0 0 0.21486 1 24859 24859 6.3541 0 1 55084 8508 36396 36417 53908 53908 0.14276829833306692 YLPSRKDIV 9 Unmodified _YLPSRKDIV_ 0 0 0 REV__ENSG00000121361|ENST00000240662|KCNJ8 REV__ENSG00000121361|ENST00000240662|KCNJ8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 364.1964416503906 3 364.213358 1089.61824 NaN NaN NaN NaN NaN NaN NaN 111.28 1 106.86 106.36 107.36 -4.4231 0 0 0 0.23508 1 21924 21924 2.7352 0 1 + 55085 15654 36397 36418 53909 53909 0.07702004885709357 YLQKETSTL 9 Unmodified _YLQKETSTL_ 0 0 0 nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-2|LARP4 nc|ENSG00000161813|Q71RC2-2|LARP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2813720703125 2 541.790047 1081.56554 0.11194 6.0648E-05 -0.32436 -0.00017573 -0.21242 -0.00011509 541.7898993279599 49.289 0.56127 46.408 46.063 46.625 -2.8811 36 15 3 0 0 0 0.12694 1 9309 9309 67.838 22.139 1 2950900 55086 5302 36398 36419 53910 53910 0.02802002032240125 YLQKETSTL 9 Unmodified _YLQKETSTL_ 0 0 0 nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-2|LARP4 nc|ENSG00000161813|Q71RC2-2|LARP4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.272705078125 2 541.790047 1081.56554 0.0098204 5.3206E-06 0.10795 5.8489E-05 0.11778 6.3809E-05 541.7899867320377 49.404 0.52905 46.398 46.106 46.635 -3.0068 34 14 3 0 0 0 0.054822 1 9063 9063 76.825 42.423 1 3298200 55087 5302 36398 36419 53911 53911 0.02802002032240125 YLQKQPYF 8 Unmodified _YLQKQPYF_ 0 0 0 ENST00000427858.4_1_2:38893303-38907288:+|nuORF;ENSG00000143891|ENST00000272252|GALM ENST00000427858.4_1_2:38893303-38907288:+|nuORF ENST00000427858.4_1_2:38893303-38907288:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7838745117188 2 543.784567 1085.55458 0.045824 2.4918E-05 -1.0743 -0.0005842 -1.0285 -0.00055928 543.7841388172891 106.4 1.737 102.02 101.15 102.89 -4.3764 159 49 5 0 0 0 0.69085 1 20239 20239 15.768 4.1279 1 35868000 55088 4529 36399 36420 53912 53912 0.01522644448596111 YLQLKGAPVY 10 Unmodified _YLQLKGAPVY_ 0 0 0 REV__ENSG00000183111|ENST00000333677|ARHGEF37 REV__ENSG00000183111|ENST00000333677|ARHGEF37 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.315673828125 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 124.5 1 119.85 119.35 120.35 -4.6495 0 0 0 0.22588 1 23957 23957 7.9102 0.62092 1 + 55089 18820 36400 36421 53913 53913 0.06935175545527272 YLQPKLLGI 9 Unmodified _YLQPKLLGI_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.N1135*|1|0.36|ENSG00000175054|chr3:142542712-142542713|-/A|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2791137695312 2 522.826235 1043.63792 0.45868 0.00023981 0.080432 4.2052E-05 0.53911 0.00028186 522.8260892117889 156.13 0.92142 150.88 150.51 151.43 -5.2526 42 25 2 0 0 0 0.76271 1 30332 30332 10.074 1.9184 1 2493600 55090 6383 36401 36422 53914 53914 0.11784380896460789 YLQRHYQFPFH 11 Unmodified _YLQRHYQFPFH_ 0 0 0 REV__ENSG00000131187|ENST00000253496|F12 REV__ENSG00000131187|ENST00000253496|F12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 512.8102416992188 3 512.589599 1534.74697 NaN NaN NaN NaN NaN NaN NaN 171.92 1 167.13 166.63 167.63 -4.7898 0 0 0 0.22632 1 34990 34990 0.026206 0 1 + 55091 16059 36402 36423 53915 53915 0.0009835984863002523 YLQSNRPWS 9 Unmodified _YLQSNRPWS_ 0 0 0 REV__ENST00000496311.1_1_11:113235534-113237012:+|nuORF REV__ENST00000496311.1_1_11:113235534-113237012:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3343505859375 2 575.78563 1149.55671 -0.019381 -1.1159E-05 -0.60057 -0.0003458 -0.61995 -0.00035696 576.286057409221 131.52 0.17435 126.89 126.75 126.93 -4.6359 6 4 2 0 0 0 0.87258 1 25924 25924 7.9102 0 1 2233700 + 55092 22388 36403 36424 53916 53916 -0.01208926813569633 YLQYSGVV 8 Unmodified _YLQYSGVV_ 0 0 0 ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant;ENSG00000155897|ENST00000286355|ADCY8 ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1650085449219 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 97.822 1 97.822 97.322 98.322 0 0 0 0 0.21486 1 19172 19172 0.45834 0 1 55093 71 36404 36425 53917 53917 0.003546936318684857 YLQYSGVV 8 Unmodified _YLQYSGVV_ 0 0 0 ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant;ENSG00000155897|ENST00000286355|ADCY8 ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16400146484375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 154.21 1 149.44 148.94 149.94 -4.7684 0 0 0 0.21486 1 30650 30650 0.45834 0 1 55094 71 36404 36425 53918 53918 0.003546936318684857 YLQYSGVV 8 Unmodified _YLQYSGVV_ 0 0 0 ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant;ENSG00000155897|ENST00000286355|ADCY8 ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 91.366 1 87.272 86.772 87.772 -4.0946 0 0 0 0.21486 1 17412 17412 0.45834 0 1 55095 71 36404 36425 53919 53919 0.003546936318684857 YLQYSGVV 8 Unmodified _YLQYSGVV_ 0 0 0 ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant;ENSG00000155897|ENST00000286355|ADCY8 ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 101.28 1 97.286 96.786 97.786 -3.9895 0 0 0 0.21486 1 19461 19461 0.45834 0 1 55096 71 36404 36425 53920 53920 0.003546936318684857 YLQYSGVV 8 Unmodified _YLQYSGVV_ 0 0 0 ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant;ENSG00000155897|ENST00000286355|ADCY8 ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1647033691406 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 101.52 1 97.533 97.033 98.033 -3.9895 0 0 0 0.21486 1 19506 19506 0.45834 0 1 55097 71 36404 36425 53921 53921 0.003546936318684857 YLRELVLLLL 10 Unmodified _YLRELVLLLL_ 0 0 0 REV__ENSG00000115970|ENST00000405975|THADA REV__ENSG00000115970|ENST00000405975|THADA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7620849609375 2 622.902474 1243.7904 NaN NaN NaN NaN NaN NaN NaN 145.28 1 145.28 144.78 145.78 0 0 0 0 0.22588 1 29034 29034 3.5965 1.9439 1 + 55098 15459 36405 36426 53922 53922 0.1782515657323529 YLRGEALSA 9 Unmodified _YLRGEALSA_ 0 0 0 REV__ARMC9|p.F398C|1|0.07|ENSG00000135931|chr2:231271055-231271055|T/G|missense_variant REV__ARMC9|p.F398C|1|0.07|ENSG00000135931|chr2:231271055-231271055|T/G|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26300048828125 2 490.263999 978.513445 -0.2809 -0.00013772 -1.2088 -0.00059262 -1.4897 -0.00073034 490.26332487166826 54.076 0.31501 50.938 50.712 51.027 -3.1377 20 8 3 0 0 0 0.40602 1 10007 10007 25.399 4.9457 1 25071000 + 55099 13124 36406 36427 53923 53923 0.023328834091216777 YLRGEALSA 9 Unmodified _YLRGEALSA_ 0 0 0 REV__ARMC9|p.F398C|1|0.07|ENSG00000135931|chr2:231271055-231271055|T/G|missense_variant REV__ARMC9|p.F398C|1|0.07|ENSG00000135931|chr2:231271055-231271055|T/G|missense_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 490.263999 978.513445 0.1495 7.3296E-05 -1.8348 -0.00089956 -1.6853 -0.00082626 490.2630983643508 54.092 0.34619 50.957 50.698 51.044 -3.1352 -0.061748 -0.00017293 NaN 25.399 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 19687000 + 55100 13124 36406 36427 0.023328834091216777 YLRGNRNS 8 Unmodified _YLRGNRNS_ 0 0 0 ENSG00000137760|ENST00000428149|ALKBH8;nc|ENSG00000137760|Q96BT7-4|ALKBH8 ENSG00000137760|ENST00000428149|ALKBH8 ENSG00000137760|ENST00000428149|ALKBH8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2579650878906 2 490.25704 978.499526 NaN NaN NaN NaN NaN NaN NaN 168.55 1 163.62 163.12 164.12 -4.9295 0 0 0 0.21452 1 33232 33232 13.508 0 1 55101 4104 36407 36428 53924 53924 0.009416507007131258 YLRKISEMI 9 Unmodified _YLRKISEMI_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3170776367188 2 576.825909 1151.63727 0.67981 0.00039213 0.51443 0.00029674 1.1942 0.00068887 576.8265901643766 119.7 0.18266 115.05 114.95 115.13 -4.645 4 2 2 0 0 0 0.5464 1 22967 22967 1.2148 1.1416 1 1127800 + 55102 14286 36408 36429 53925 53925 0.06751218185127073 YLRKRKFYLKK 11 Unmodified _YLRKRKFYLKK_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 771.9849243164062 2 771.985195 1541.95584 NaN NaN NaN NaN NaN NaN NaN 176.6 1 171.7 171.2 172.2 -4.9008 0 0 0 0.22632 1 35213 35213 0.0072825 0.0072825 1 55103 8872 36409 36430 53926 53926 0.20653808152724196 YLRLRRKLRPP 11 Unmodified _YLRLRRKLRPP_ 0 0 0 REV__ENST00000509910.1_1_5:115167175-115167292:-|nuORF REV__ENST00000509910.1_1_5:115167175-115167292:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.27154541015625 3 489.984283 1466.93102 NaN NaN NaN NaN NaN NaN NaN 57.715 1 57.715 57.215 58.215 0 0 0 0 0.22632 1 11039 11039 0.026206 0 1 + 55104 22533 36410 36431 53927 53927 0.21623173069997392 YLRNHRYYHYL 11 Unmodified _YLRNHRYYHYL_ 0 0 0 ENST00000481979.1_1_6:83863232-83863364:+|nuORF ENST00000481979.1_1_6:83863232-83863364:+|nuORF ENST00000481979.1_1_6:83863232-83863364:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2739868164062 3 533.27227 1596.79498 NaN NaN NaN NaN NaN NaN NaN 80.128 1 80.128 79.628 80.628 0 0 0 0 0.22632 1 15600 15600 0.026206 0 1 55105 10387 36411 36432 53928 53928 0.020454337687169755 YLRPRDRGRTQ 11 Unmodified _YLRPRDRGRTQ_ 0 0 0 nc|ENSG00000062524|P29376-3|LTK;ENST00000563518.5_1_15:41799676-41805922:-|nuORF;nc|ENSG00000062524|P29376-5|LTK;LTK|p.D681Tfs*76|1|0.2|ENSG00000062524|chr15:41504852-41504852|C/-|frameshift_variant;nc|ENSG00000062524|P29376-4|LTK;ENSG00000062524|ENST00000263800|LTK nc|ENSG00000062524|P29376-3|LTK nc|ENSG00000062524|P29376-3|LTK MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 473.277099609375 3 473.263886 1416.76983 NaN NaN NaN NaN NaN NaN NaN 68.934 1 65.397 64.897 65.897 -3.5362 0 0 0 0.22632 1 12970 12970 5.4027 5.3765 1 55106 12221 36412 36433 53929 53929 0.0781137896610744 YLRRLKKTT 9 Unmodified _YLRRLKKTT_ 0 0 0 REV__ENSG00000106819|ENST00000375544|ASPN REV__ENSG00000106819|ENST00000375544|ASPN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2633056640625 2 589.87204 1177.72953 NaN NaN NaN NaN NaN NaN NaN 46.389 1 43.524 43.024 44.024 -2.8653 0 0 0 0.19627 1 8432 8432 0.073264 0.073264 1 + 55107 15066 36413 36434 53930 53930 0.14777064313648225 YLRRVVYPLEK 11 Unmodified _YLRRVVYPLEK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 479.2127685546875 3 479.285516 1434.83472 NaN NaN NaN NaN NaN NaN NaN 93.078 1 89.234 88.734 89.734 -3.844 0 0 0 0.22632 1 17843 17843 0.00056442 0 1 55108 3644 36414 36435 53931 53931 0.13469560719408946 YLSERNAKN 9 Unmodified _YLSERNAKN_ 0 0 0 REV__nc|ENSG00000139636|Q6UX01-3|LMBR1L REV__nc|ENSG00000139636|Q6UX01-3|LMBR1L MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7921752929688 2 547.783087 1093.55162 0.13511 7.4012E-05 4.4038 0.0024123 4.5389 0.0024863 548.2866565786467 145.92 0.10249 140.81 140.76 140.86 -5.1108 4 2 2 0 0 0 0.60805 1 28216 28216 12.532 2.4576 1 967340 + 55109 16530 36415 36436 53932 53932 0.008587693238041538 YLSERNAKN 9 Unmodified _YLSERNAKN_ 0 0 0 REV__nc|ENSG00000139636|Q6UX01-3|LMBR1L REV__nc|ENSG00000139636|Q6UX01-3|LMBR1L MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 547.783087 1093.55162 0.13511 7.4012E-05 4.4038 0.0024123 4.5389 0.0024863 548.2866565786467 145.92 0.10249 140.81 140.76 140.86 -5.1108 0 0 NaN 12.532 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 967340 + 55110 16530 36415 36436 0.008587693238041538 YLSFWFFYKFS 11 Unmodified _YLSFWFFYKFS_ 0 0 0 REV__ENST00000607510.1_1_3:44379447-44379723:-|nuORF REV__ENST00000607510.1_1_3:44379447-44379723:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 512.2771606445312 3 512.251701 1533.73327 NaN NaN NaN NaN NaN NaN NaN 117.1 1 117.1 116.6 117.6 0 0 0 0 0.22632 1 23065 23065 0.2986 0 1 + 55111 23472 36416 36437 53933 53933 -0.012243107031736145 YLSNADERL 9 Unmodified _YLSNADERL_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2584228515625 2 540.769645 1079.52474 0.25984 0.00014051 0.16616 8.9852E-05 0.426 0.00023037 540.7697093500044 62.164 0.48984 59.203 58.937 59.427 -2.9614 23 13 3 0 0 0 0.15274 2 11972 11964;11972 43.772 7.6454 1 1667500 55112 899 36417 36438 53934;53935 53935 -0.011843392873743142 YLSNADERL 9 Unmodified _YLSNADERL_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2719116210938 2 540.769645 1079.52474 0.22683 0.00012266 0.16721 9.0424E-05 0.39404 0.00021309 540.7694839515873 62.577 0.51912 59.181 58.934 59.453 -3.3959 25 14 2 0 0 0 0.5685 1 11654 11654 15.248 0.41021 1 1445600 55113 899 36417 36438 53936 53936 -0.011843392873743142 YLSNADERL 9 Unmodified _YLSNADERL_ 0 0 0 DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.271728515625 2 540.769645 1079.52474 0.30348 0.00016411 0.65958 0.00035668 0.96306 0.00052079 540.7698592011794 62.442 0.59122 59.202 58.966 59.557 -3.2395 28 16 2 0 0 0 0.27986 1 11722 11722 32.786 3.7041 1 1268500 55114 899 36417 36438 53937 53937 -0.011843392873743142 YLSRPGETRVM 11 Unmodified _YLSRPGETRVM_ 0 0 0 REV__ENSG00000175567|ENST00000663595|UCP2 REV__ENSG00000175567|ENST00000663595|UCP2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.21588134765625 3 436.895812 1307.66561 -0.17858 -7.8022E-05 0.25092 0.00010962 0.072333 3.1602E-05 436.8958873444966 55.773 0.45491 52.597 52.414 52.869 -3.1761 19 12 2 0 0 0 0.69297 1 10406 10406 12.228 0.59622 1 2891100 + 55115 18481 36418 36439 53938 53938 0.024079160943756506 YLSRPGETRVM 11 Unmodified _YLSRPGETRVM_ 0 0 0 REV__ENSG00000175567|ENST00000663595|UCP2 REV__ENSG00000175567|ENST00000663595|UCP2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 436.895812 1307.66561 0.20801 9.088E-05 -0.49228 -0.00021507 -0.28426 -0.00012419 436.8957204139754 52.671 0.35576 52.671 52.501 52.857 0 0.053832 -0.00050512 NaN 12.228 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3205700 + 55116 18481 36418 36439 0.024079160943756506 YLSRPGETRVM 11 Unmodified _YLSRPGETRVM_ 0 0 0 REV__ENSG00000175567|ENST00000663595|UCP2 REV__ENSG00000175567|ENST00000663595|UCP2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 436.895812 1307.66561 -0.3209 -0.0001402 0.082985 3.6256E-05 -0.23792 -0.00010395 436.8959459770263 55.477 0.31093 52.593 52.458 52.768 -2.8837 -0.023661 0.00024887 NaN 12.228 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3891000 + 55117 18481 36418 36439 0.024079160943756506 YLSRPGETRVM 11 Unmodified _YLSRPGETRVM_ 0 0 0 REV__ENSG00000175567|ENST00000663595|UCP2 REV__ENSG00000175567|ENST00000663595|UCP2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 436.895812 1307.66561 0.026723 1.1675E-05 -0.28394 -0.00012405 -0.25721 -0.00011238 436.89574963818563 55.797 0.38755 52.607 52.424 52.811 -3.1895 -0.0096931 -0.00023205 NaN 12.228 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2215600 + 55118 18481 36418 36439 0.024079160943756506 YLSRPGETRVM 11 Unmodified _YLSRPGETRVM_ 0 0 0 REV__ENSG00000175567|ENST00000663595|UCP2 REV__ENSG00000175567|ENST00000663595|UCP2 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 436.895812 1307.66561 -0.17858 -7.8022E-05 0.25092 0.00010962 0.072333 3.1602E-05 436.8958873444966 55.773 0.45491 52.597 52.414 52.869 -3.1761 -0.020478 0.00046897 NaN 12.228 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2891100 + 55119 18481 36418 36439 0.024079160943756506 YLSRVKKEE 9 Unmodified _YLSRVKKEE_ 0 0 0 nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;ENST00000465600.1_1_10:124008150-124013568:+|nuORF;nc|ENSG00000138162|O95359-2|TACC2 nc|ENSG00000138162|O95359-3|TACC2 nc|ENSG00000138162|O95359-3|TACC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3275146484375 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 151.72 1 151.72 151.22 152.22 0 0 0 0 0.23508 1 30388 30388 10.074 1.3285 1 55120 4158 36419 36440 53939 53939 0.06533086051808823 YLTGEKIDK 9 Unmodified _YLTGEKIDK_ 0 0 0 REV__tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1 REV__tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2802124023438 2 533.792589 1065.57063 0.20908 0.00011161 -0.13783 -7.3573E-05 0.071249 3.8032E-05 533.7925366882364 152.65 0.60484 147.9 147.64 148.24 -4.7523 27 16 2 0 0 0 0.69192 1 30341 30341 20.454 3.3407 1 4469600 + 55121 25175 36420 36441 53940 53940 0.04046305894826219 YLTGEKIDK 9 Unmodified _YLTGEKIDK_ 0 0 0 REV__tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1 REV__tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2640991210938 2 533.792589 1065.57063 0.50383 0.00026894 0.16157 8.6245E-05 0.6654 0.00035518 533.792626930403 153.29 0.65109 148.03 147.64 148.3 -5.2669 31 18 2 0 0 0 0.69192 1 29691 29691 20.454 11.708 1 2958100 + 55122 25175 36420 36441 53941 53941 0.04046305894826219 YLTTTSVM 8 Unmodified _YLTTTSVM_ 0 0 0 ENST00000544551.5_1_11:110101544-110101670:-|nuORF ENST00000544551.5_1_11:110101544-110101670:-|nuORF ENST00000544551.5_1_11:110101544-110101670:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.22674560546875 2 458.228236 914.44192 NaN NaN NaN NaN NaN NaN NaN 161.39 1 156.6 156.1 157.1 -4.7952 0 0 0 0.23294 1 32096 32096 0.12286 0.11459 1 55123 11111 36421 36442 53942 53942 -0.018723723397215508 YLTYKHIYMF 10 Unmodified _YLTYKHIYMF_ 0 0 0 REV__ENST00000396981.6_1_17:4175487-4175577:-|nuORF REV__ENST00000396981.6_1_17:4175487-4175577:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2318115234375 3 460.233653 1377.67913 NaN NaN NaN NaN NaN NaN NaN 159.27 1 153.99 153.49 154.49 -5.2712 0 0 0 2.8426 1 30903 30903 0.043787 0.012378 1 + 55124 21291 36422 36443 53943 53943 0.005397738736292013 YLVAEKVVV 9 Unmodified _YLVAEKVVV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 509.8039245605469 2 510.310418 1018.60628 -0.27146 -0.00013853 0.1199 6.1188E-05 -0.15156 -7.7341E-05 510.31041919695855 113.13 0.39444 108.67 108.43 108.83 -4.4539 17 10 2 0 0 0 0.27464 1 22280 22280 29.082 24.366 1 799470 55125 1874 36423 36444 53944 53944 0.09772388142528143 YLVAEKVVV 9 Unmodified _YLVAEKVVV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 510.310418 1018.60628 -0.37617 -0.00019196 0.011631 5.9352E-06 -0.36454 -0.00018603 510.3103598626619 113.23 0.34856 108.7 108.54 108.89 -4.5259 0.012702 -8.0522E-05 NaN 29.082 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 981580 55126 1874 36423 36444 0.09772388142528143 YLVELITDI 9 Unmodified _YLVELITDI_ 0 0 0 tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1 tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1 tr|U7STT8|U7STT8_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01565PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2014465332031 3 360.205869 1077.59578 NaN NaN NaN NaN NaN NaN NaN 114.64 1 114.64 114.14 115.14 0 0 0 0 0.23508 1 22552 22552 4.897 0 1 55127 26167 36424 36445 53945 53945 0.060083606974330905 YLVLLPRDY 9 Unmodified _YLVLLPRDY_ 0 0 0 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.E2016Rfs*13|1|0.27|ENSG00000053747|chr18:23901164-23901164|G/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3253173828125 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 128.81 1 128.81 128.31 129.31 0 0 0 0 0.19638 1 25440 25440 0.40827 0.3444 1 55128 1257 36425 36446 53946 53946 0.06935175545504535 YLVLLPRDY 9 Unmodified _YLVLLPRDY_ 0 0 0 LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.E2016Rfs*13|1|0.27|ENSG00000053747|chr18:23901164-23901164|G/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3258056640625 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 133.47 1 128.6 128.1 129.1 -4.8726 0 0 0 0.1966 1 25644 25644 0.073264 0 1 55129 1257 36425 36446 53947 53947 0.06935175545504535 YLVNLSEKD 9 Unmodified _YLVNLSEKD_ 0 0 0 ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;nc|ENSG00000138430|Q9NTK5-3|OLA1;ENSG00000138430|ENST00000284719|OLA1 ENST00000462000.1_1_2:174945834-174988397:-|nuORF ENST00000462000.1_1_2:174945834-174988397:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2720947265625 2 540.782222 1079.54989 0.63973 0.00034595 -0.55973 -0.00030269 0.080001 4.3263E-05 540.7816892014318 77.878 0.42014 77.878 77.702 78.122 0 18 11 2 0 0 0 0.25183 1 15157 15157 34.402 4.5611 1 1758100 55130 4169 36426 36447 53948 53948 0.013297155152031337 YLVNLSEKD 9 Unmodified _YLVNLSEKD_ 0 0 0 ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;nc|ENSG00000138430|Q9NTK5-3|OLA1;ENSG00000138430|ENST00000284719|OLA1 ENST00000462000.1_1_2:174945834-174988397:-|nuORF ENST00000462000.1_1_2:174945834-174988397:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2845458984375 2 540.782222 1079.54989 -0.08988 -4.8606E-05 0.39095 0.00021142 0.30107 0.00016282 540.7824115930663 81.631 0.59622 77.943 77.626 78.223 -3.6879 25 16 2 0 0 0 0.34411 1 15534 15534 29.082 0 1 1592700 55131 4169 36426 36447 53949 53949 0.013297155152031337 YLVRSSQLD 9 Unmodified _YLVRSSQLD_ 0 0 0 REV__LLGL2|p.G220S|1|0.35|ENSG00000073350|chr17:75563143-75563143|G/A|missense_variant REV__LLGL2|p.G220S|1|0.35|ENSG00000073350|chr17:75563143-75563143|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2606811523438 2 540.787838 1079.56112 0.34617 0.00018721 -0.12151 -6.5714E-05 0.22466 0.00012149 540.7877073702531 75.401 0.42982 71.767 71.534 71.964 -3.6337 17 11 2 0 0 0 0.66788 1 14336 14336 29.082 1.8583 1 1395800 + 55132 23798 36427 36448 53950 53950 0.024525376093379236 YLVYQKDYL 9 Unmodified _YLVYQKDYL_ 0 0 0 ENST00000254770.2_1_7:55499387-55499579:+|nuORF ENST00000254770.2_1_7:55499387-55499579:+|nuORF ENST00000254770.2_1_7:55499387-55499579:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2879638671875 2 602.816064 1203.61758 0.98085 0.00059127 -2.7549 -0.0016607 -1.7741 -0.0010694 602.8131391954382 84.029 0.13197 80.421 80.323 80.455 -3.6079 5 3 2 0 0 0 0.85699 1 16415 16415 9.3474 1.4373 1 540640 55133 8247 36428 36449 53951 53951 0.023911654459880083 YLWSPTLLT 9 Unmodified _YLWSPTLLT_ 0 0 0 ENST00000472090.6_1_10:42947077-42949616:-|nuORF ENST00000472090.6_1_10:42947077-42949616:-|nuORF ENST00000472090.6_1_10:42947077-42949616:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7698974609375 2 547.30005 1092.58555 0.26918 0.00014732 3.0388 0.0016631 3.308 0.0018105 547.8029962295954 145.65 0.1776 140.98 140.82 141 -4.6694 5 4 2 0 0 0 0.84208 1 28846 28846 3.9444 0.3479 1 794980 55134 10220 36429 36450 53952 53952 0.04295797762847542 YLYAVGNK 8 Unmodified _YLYAVGNK_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000023055 REV__CON__ENSEMBL:ENSBTAP00000023055 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2537841796875 2 464.25036 926.486168 -0.095341 -4.4262E-05 0.16039 7.4463E-05 0.065052 3.0201E-05 464.25038355729583 84.352 0.58965 80.688 80.433 81.023 -3.6641 42 16 4 0 0 0 0.64227 1 16486 16486 19.439 1.304 1 3652900 + + 55135 13507 36430 36451 53953 53953 0.01998399868762135 YLYAVGNK 8 Unmodified _YLYAVGNK_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000023055 REV__CON__ENSEMBL:ENSBTAP00000023055 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 464.25036 926.486168 0.5333 0.00024759 -0.36493 -0.00016942 0.16838 7.8169E-05 464.25011799973663 80.434 0.62233 80.434 80.075 80.697 0 -0.17698 -0.00035482 NaN 19.439 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2218500 + + 55136 13507 36430 36451 0.01998399868762135 YLYAVGNK 8 Unmodified _YLYAVGNK_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000023055 REV__CON__ENSEMBL:ENSBTAP00000023055 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 464.25036 926.486168 -0.095341 -4.4262E-05 0.16039 7.4463E-05 0.065052 3.0201E-05 464.25038355729583 84.352 0.58965 80.688 80.433 81.023 -3.6641 0.077457 0.00013294 NaN 19.439 42 16 4 NaN NaN NaN NaN 0 NaN NaN 0 3652900 + + 55137 13507 36430 36451 0.01998399868762135 YLYAVGNK 8 Unmodified _YLYAVGNK_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000023055 REV__CON__ENSEMBL:ENSBTAP00000023055 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 464.25036 926.486168 0.13558 6.2943E-05 -0.025698 -1.193E-05 0.10988 5.1013E-05 464.2502503964087 84.56 0.52437 80.651 80.457 80.981 -3.9093 0.040083 -3.985E-05 NaN 19.439 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3000200 + + 55138 13507 36430 36451 0.01998399868762135 YLYAVGNK 8 Unmodified _YLYAVGNK_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000023055 REV__CON__ENSEMBL:ENSBTAP00000023055 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 464.25036 926.486168 -0.022548 -1.0468E-05 0.12234 5.6795E-05 0.099789 4.6327E-05 464.2502805903888 84.382 0.63342 80.67 80.346 80.979 -3.7117 0.059439 9.76E-05 NaN 19.439 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2692900 + + 55139 13507 36430 36451 0.01998399868762135 YLYDLNHTL 9 Unmodified _YLYDLNHTL_ 0 0 0 UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant;ENSG00000110057|ENST00000227471|UNC93B1 UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3341064453125 2 576.290214 1150.56587 0.29328 0.00016901 0.23486 0.00013535 0.52814 0.00030436 576.290369453428 128.98 0.70212 128.98 128.53 129.23 0 32 19 3 0 0 0 0.11219 2 25474 25435;25474 51.63 17.527 1 2953500 55140 2556 36431 36452 53954;53955 53955 -0.0033857824791994062 YLYDLNHTL 9 Unmodified _YLYDLNHTL_ 0 0 0 UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant;ENSG00000110057|ENST00000227471|UNC93B1 UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3160400390625 2 576.290214 1150.56587 0.0042054 2.4235E-06 0.33943 0.00019561 0.34364 0.00019803 576.2906477008527 133.49 0.55722 128.85 128.55 129.11 -4.6399 23 15 2 0 0 0 0.09885 2 26311 26311;26349 56.177 18.203 1 3913300 55141 2556 36431 36452 53956;53957 53956 -0.0033857824791994062 YLYDLNHTL 9 Unmodified _YLYDLNHTL_ 0 0 0 UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant;ENSG00000110057|ENST00000227471|UNC93B1 UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3145751953125 2 576.290214 1150.56587 0.15428 8.8908E-05 0.21891 0.00012616 0.37319 0.00021507 576.2903438070903 133.78 0.64961 128.91 128.58 129.23 -4.8726 37 18 3 0 0 0 0.036636 1 25678 25678 69.105 36.799 1 4191100 55142 2556 36431 36452 53958 53958 -0.0033857824791994062 YLYDLNHTL 9 Unmodified _YLYDLNHTL_ 0 0 0 UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant;ENSG00000110057|ENST00000227471|UNC93B1 UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3358154296875 2 576.290214 1150.56587 0.21337 0.00012296 0.21917 0.0001263 0.43253 0.00024927 576.2902690529326 133.67 0.71179 128.85 128.59 129.3 -4.8175 33 19 3 0 0 0 0.033473 2 25732 25718;25732 78.728 38.771 1 3841000 55143 2556 36431 36452 53959;53960 53960 -0.0033857824791994062 YLYEVTGA 8 Unmodified _YLYEVTGA_ 0 0 0 REV__ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant REV__ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.2257995605469 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 112.72 1 108.44 107.94 108.94 -4.2725 0 0 0 0.2343 1 21705 21705 0.68139 0.054566 1 + 55144 12909 36432 36453 53961 53961 -0.022092991220915792 YLYFFRLWHRK 11 Unmodified _YLYFFRLWHRK_ 0 0 0 REV__ENSG00000182087|ENST00000356663|TMEM259 REV__ENSG00000182087|ENST00000356663|TMEM259 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3545532226562 2 814.94607 1627.87759 NaN NaN NaN NaN NaN NaN NaN 121.72 1 117.18 116.68 117.68 -4.5476 0 0 0 0.23698 1 23991 23991 0.30703 0 1 + 55145 18753 36433 36454 53962 53962 0.08876375567479045 YLYHGCNCNR 10 Unmodified _YLYHGCNCNR_ 0 0 0 REV__SCNN1B|p.E438Pfs*17|1|0.5|ENSG00000168447|chr16:23377201-23377204|AGAG/-|frameshift_variant REV__SCNN1B|p.E438Pfs*17|1|0.5|ENSG00000168447|chr16:23377201-23377204|AGAG/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76220703125 2 621.760775 1241.507 0.3557 0.00022116 -1.5699 -0.00097613 -1.2142 -0.00075497 621.7599329770952 128.99 0.74171 124.25 123.87 124.61 -4.7408 50 20 3 0 0 0 0.42868 1 24807 24807 0.26539 0 1 5755200 + 55146 18026 36434 36455 53963 53963 -0.10409701085541201 YLYKSDKFTRY 11 Unmodified _YLYKSDKFTRY_ 0 0 0 REV__nc|ENSG00000185532|Q13976-3|PRKG1 REV__nc|ENSG00000185532|Q13976-3|PRKG1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.382080078125 2 742.382634 1482.75072 NaN NaN NaN NaN NaN NaN NaN 124.98 1 120.33 119.83 120.83 -4.6495 0 0 0 0.22632 1 24048 24048 0.026206 0 1 + 55147 18975 36435 36456 53964 53964 0.028649848318536897 YLYLVMEY 8 Unmodified _YLYLVMEY_ 0 0 0 ENSG00000165059|ENST00000377276|PRKACG;nc|ENSG00000104936|Q09013-12|DMPK;nc|ENSG00000104936|Q09013-10|DMPK;nc|ENSG00000104936|Q09013-2|DMPK;nc|ENSG00000104936|Q09013-8|DMPK;ENST00000596686.5_1_19:46273741-46282867:-|nuORF;nc|ENSG00000104936|Q09013-5|DMPK;nc|ENSG00000104936|Q09013-7|DMPK;nc|ENSG00000104936|Q09013-11|DMPK;nc|ENSG00000104936|Q09013-15|DMPK;ENSG00000104936|ENST00000291270|DMPK;nc|ENSG00000104936|Q09013-16|DMPK;nc|ENSG00000104936|Q09013-6|DMPK;nc|ENSG00000104936|Q09013-1|DMPK ENSG00000165059|ENST00000377276|PRKACG ENSG00000165059|ENST00000377276|PRKACG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7777709960938 2 547.267361 1092.52017 0.13261 7.2573E-05 0.48569 0.0002658 0.6183 0.00033837 547.2677413858563 44.022 1.0089 41.231 40.736 41.745 -2.79 65 28 4 0 0 0 0.69887 1 8334 8334 14.582 5.1986 1 5114600 55148 5591 36436 36457 53965 53965 -0.022389397545111933 YLYLVMEY 8 Unmodified _YLYLVMEY_ 0 0 0 ENSG00000165059|ENST00000377276|PRKACG;nc|ENSG00000104936|Q09013-12|DMPK;nc|ENSG00000104936|Q09013-10|DMPK;nc|ENSG00000104936|Q09013-2|DMPK;nc|ENSG00000104936|Q09013-8|DMPK;ENST00000596686.5_1_19:46273741-46282867:-|nuORF;nc|ENSG00000104936|Q09013-5|DMPK;nc|ENSG00000104936|Q09013-7|DMPK;nc|ENSG00000104936|Q09013-11|DMPK;nc|ENSG00000104936|Q09013-15|DMPK;ENSG00000104936|ENST00000291270|DMPK;nc|ENSG00000104936|Q09013-16|DMPK;nc|ENSG00000104936|Q09013-6|DMPK;nc|ENSG00000104936|Q09013-1|DMPK ENSG00000165059|ENST00000377276|PRKACG ENSG00000165059|ENST00000377276|PRKACG MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7679443359375 2 547.267361 1092.52017 0.014293 7.8224E-06 0.50643 0.00027715 0.52072 0.00028497 547.2675522434113 43.96 0.8385 41.212 40.8 41.638 -2.7475 54 23 3 0 0 0 0.69887 1 8003 8003 14.582 0.67564 1 3705100 55149 5591 36436 36457 53966 53966 -0.022389397545111933 YLYLYIYMYRH 11 Unmodified _YLYLYIYMYRH_ 0 0 0 ENST00000515408.5_1_5:112353398-112353584:+|nuORF ENST00000515408.5_1_5:112353398-112353584:+|nuORF ENST00000515408.5_1_5:112353398-112353584:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.268310546875 3 533.267245 1596.77991 NaN NaN NaN NaN NaN NaN NaN 76.482 1 73.067 72.567 73.567 -3.4151 0 0 0 0.22632 1 14928 14928 0.026206 0.02025 1 55150 10786 36437 36458 53967 53967 0.005388058564676612 YLYLYIYMYRH 11 Unmodified _YLYLYIYMYRH_ 0 0 0 ENST00000515408.5_1_5:112353398-112353584:+|nuORF ENST00000515408.5_1_5:112353398-112353584:+|nuORF ENST00000515408.5_1_5:112353398-112353584:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2691650390625 3 533.267245 1596.77991 NaN NaN NaN NaN NaN NaN NaN 55.509 1 52.371 51.871 52.871 -3.1377 0 0 0 0.22632 1 10307 10307 0.0059557 0 1 55151 10786 36437 36458 53968 53968 0.005388058564676612 YLYNQTEL 8 Unmodified _YLYNQTEL_ 0 0 0 nc|ENSG00000177338|Q8N7U9-2|LINC00469 nc|ENSG00000177338|Q8N7U9-2|LINC00469 nc|ENSG00000177338|Q8N7U9-2|LINC00469 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2732543945312 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 129.44 1 124.62 124.12 125.12 -4.817 0 0 0 0.20618 1 24850 24850 20.454 2.3073 1 55152 12483 36438 36459 53969 53969 -0.022422425476406715 YLYSQDGSFY 10 Unmodified _YLYSQDGSFY_ 0 0 0 ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 414.2697448730469 3 414.848633 1241.52407 0.25496 0.00010577 -1.1061 -0.00045887 -0.85116 -0.0003531 414.84870074723426 66.968 0.4556 63.472 63.148 63.603 -3.4965 14 12 2 0 0 0 1.1322 1 12504 12504 0.26539 0 1 564440 55153 27 36439 36460 53970 53970 -0.08703178727091654 YMAMWILEF 9 Unmodified _YMAMWILEF_ 0 0 0 REV__tr|U7STR4|U7STR4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01158PE=4SV=1 REV__tr|U7STR4|U7STR4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01158PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2824096679688 2 602.282489 1202.55042 NaN NaN NaN NaN NaN NaN NaN 67.422 1 67.422 66.922 67.922 0 0 0 0 0.19632 1 13033 13033 0.029283 0 1 + 55154 25120 36440 36461 53971 53971 -0.04274904360977416 YMASDELK 8 Unmodified _YMASDELK_ 0 0 0 REV__nc|ENSG00000226660|A0A1B0GX68|TRBV2 REV__nc|ENSG00000226660|A0A1B0GX68|TRBV2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7217102050781 2 478.723318 955.432083 NaN NaN NaN NaN NaN NaN NaN 151.49 1 151.49 150.99 151.99 0 0 0 0 0.21486 1 30337 30337 12.532 0 1 + 55155 24278 36441 36462 53972 53972 -0.047415603451327115 YMDAPKAAL 9 Unmodified _YMDAPKAAL_ 0 0 0 ENST00000494854.5_1_3:48510508-48510649:-|nuORF;ENST00000497863.1_1_3:48510508-48511042:-|nuORF;nc|ENSG00000164054|Q8N114-3|SHISA5;ENST00000465449.5_1_3:48510508-48514931:-|nuORF;nc|ENSG00000164054|Q8N114-2|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000164054|ENST00000296444|SHISA5 ENST00000494854.5_1_3:48510508-48510649:-|nuORF ENST00000494854.5_1_3:48510508-48510649:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2747802734375 2 490.249503 978.484453 0.29209 0.0001432 -0.50001 -0.00024513 -0.20792 -0.00010193 490.249246493796 74.583 0.69873 74.583 74.082 74.781 0 26 19 2 0 0 0 0.21532 1 14458 14458 36.506 19.393 1 2542400 55156 5499 36442 36463 53973 53973 -0.005649772115248197 YMDAPKAAL 9 Unmodified _YMDAPKAAL_ 0 0 0 ENST00000494854.5_1_3:48510508-48510649:-|nuORF;ENST00000497863.1_1_3:48510508-48511042:-|nuORF;nc|ENSG00000164054|Q8N114-3|SHISA5;ENST00000465449.5_1_3:48510508-48514931:-|nuORF;nc|ENSG00000164054|Q8N114-2|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000164054|ENST00000296444|SHISA5 ENST00000494854.5_1_3:48510508-48510649:-|nuORF ENST00000494854.5_1_3:48510508-48510649:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2645568847656 2 490.249503 978.484453 0.11927 5.8472E-05 0.18642 9.1393E-05 0.30569 0.00014986 490.2495301946125 78.121 0.46472 74.658 74.5 74.965 -3.4633 20 12 2 0 0 0 0.64397 1 15236 15236 31.268 4.3847 1 2215500 55157 5499 36442 36463 53974 53974 -0.005649772115248197 YMDAPKAAL 9 Unmodified _YMDAPKAAL_ 0 0 0 ENST00000494854.5_1_3:48510508-48510649:-|nuORF;ENST00000497863.1_1_3:48510508-48511042:-|nuORF;nc|ENSG00000164054|Q8N114-3|SHISA5;ENST00000465449.5_1_3:48510508-48514931:-|nuORF;nc|ENSG00000164054|Q8N114-2|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000164054|ENST00000296444|SHISA5 ENST00000494854.5_1_3:48510508-48510649:-|nuORF ENST00000494854.5_1_3:48510508-48510649:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26611328125 2 490.249503 978.484453 0.076087 3.7302E-05 0.32605 0.00015984 0.40214 0.00019715 490.2495975673665 78.578 0.42645 74.774 74.487 74.913 -3.8048 25 11 3 0 0 0 0.27986 1 14915 14915 32.786 11.249 1 2035300 55158 5499 36442 36463 53975 53975 -0.005649772115248197 YMDAPKAAL 9 Unmodified _YMDAPKAAL_ 0 0 0 ENST00000494854.5_1_3:48510508-48510649:-|nuORF;ENST00000497863.1_1_3:48510508-48511042:-|nuORF;nc|ENSG00000164054|Q8N114-3|SHISA5;ENST00000465449.5_1_3:48510508-48514931:-|nuORF;nc|ENSG00000164054|Q8N114-2|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000164054|ENST00000296444|SHISA5 ENST00000494854.5_1_3:48510508-48510649:-|nuORF ENST00000494854.5_1_3:48510508-48510649:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2647705078125 2 490.249503 978.484453 -0.23667 -0.00011603 0.6225 0.00030518 0.38583 0.00018915 490.2498136363318 78.417 0.42444 74.759 74.516 74.941 -3.6588 19 11 2 0 0 0 0.13932 2 14947 14944;14947 45.7 35.826 1 1675400 55159 5499 36442 36463 53976;53977 53977 -0.005649772115248197 YMENGMQAV 9 Unmodified _YMENGMQAV_ 0 0 0 CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant;ENSG00000141582|ENST00000269397|CBX4 CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.278076171875 2 521.720252 1041.42595 -0.28864 -0.00015059 -0.20098 -0.00010486 -0.48962 -0.00025544 521.7205938771326 75.102 0.61414 71.738 71.521 72.136 -3.3643 36 17 3 0 0 0 0.14967 1 14661 14661 58.679 39.422 1 1800300 55160 402 36443 36464 53978 53978 -0.09310401848301808 YMENGMQAV 9 Unmodified _YMENGMQAV_ 0 0 0 CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant;ENSG00000141582|ENST00000269397|CBX4 CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2775268554688 2 521.720252 1041.42595 -0.59659 -0.00031126 0.93031 0.00048536 0.33372 0.00017411 521.7206044518471 75.488 0.52116 71.766 71.579 72.101 -3.7227 26 14 2 0 0 0 0.58699 1 14278 14278 32.305 25.582 1 1991300 55161 402 36443 36464 53979 53979 -0.09310401848301808 YMENGMQAV 9 Unmodified _YMENGMQAV_ 0 0 0 CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant;ENSG00000141582|ENST00000269397|CBX4 CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.277587890625 2 521.720252 1041.42595 0.31796 0.00016589 -0.39339 -0.00020524 -0.075429 -3.9353E-05 521.7201394657895 75.401 0.53378 71.767 71.467 72.001 -3.6337 22 14 2 0 0 0 0.47479 1 14323 14323 18.146 11.423 1 1404100 55162 402 36443 36464 53980 53980 -0.09310401848301808 YMGKLRVTGV 10 Unmodified _YMGKLRVTGV_ 0 0 0 ENST00000555259.5_1_14:31112578-31185169:+|nuORF ENST00000555259.5_1_14:31112578-31185169:+|nuORF ENST00000555259.5_1_14:31112578-31185169:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21649169921875 3 375.214593 1122.62195 NaN NaN NaN NaN NaN NaN NaN 176.84 1 172.05 171.55 172.55 -4.7898 0 0 0 2.8426 1 36167 36167 0.043787 0 1 55163 11230 36444 36465 53981 53981 0.06554351387921997 YMKMLPECDD 10 Unmodified _YMKMLPECDD_ 0 0 0 REV__SFRP4|p.R105C|2|0.35|ENSG00000106483|chr7:37916225-37916225|G/A|missense_variant REV__SFRP4|p.R105C|2|0.35|ENSG00000106483|chr7:37916225-37916225|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7638549804688 2 622.753435 1243.49232 NaN NaN NaN NaN NaN NaN NaN 67.947 1 64.41 63.91 64.91 -3.5362 0 0 0 2.8426 1 12759 12759 0.20733 0 1 + 55164 15053 36445 36466 53982 53982 -0.11968954068561288 YMMMMDCWH 9 Unmodified _YMMMMDCWH_ 0 0 0 FGFR2|p.R737M|1|0.57|ENSG00000066468|chr10:121483789-121483789|C/A|missense_variant FGFR2|p.R737M|1|0.57|ENSG00000066468|chr10:121483789-121483789|C/A|missense_variant FGFR2|p.R737M|1|0.57|ENSG00000066468|chr10:121483789-121483789|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 624.575927734375 2 624.212368 1246.41018 NaN NaN NaN NaN NaN NaN NaN 167.45 1 162.66 162.16 163.16 -4.7898 0 0 0 0.19624 1 33769 33769 0.073264 0 1 55165 11814 36446 36467 53983 53983 -0.2031647095286644 YMMPVNSEV 9 Oxidation (M) _YM(Oxidation (M))MPVNSEV_ YM(0.883)M(0.117)PVNSEV YM(8.8)M(-8.8)PVNSEV 0 0 1 ENST00000487578.2_1_1:163295841-163298095:+|nuORF;NUF2|p.K115Nfs*7|1|0.23|ENSG00000143228|chr1:163336755-163336755|A/-|frameshift_variant;NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2 ENST00000487578.2_1_1:163295841-163298095:+|nuORF ENST00000487578.2_1_1:163295841-163298095:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7911376953125 2 543.235735 1084.45692 0.23824 0.00012942 -1.0067 -0.00054689 -0.76848 -0.00041747 543.2355329053771 94.211 0.62589 90.221 89.792 90.418 -3.9907 50 17 4 0 0 0 0.11447 1 18491 18491 50.855 20.218 2 2345400 55166 4466 36447 36468 53984 53984 69 -0.08193248534053055 YMMPVNSEV 9 Oxidation (M) _YM(Oxidation (M))MPVNSEV_ YM(0.9)M(0.1)PVNSEV YM(9.5)M(-9.5)PVNSEV 0 0 1 ENST00000487578.2_1_1:163295841-163298095:+|nuORF;NUF2|p.K115Nfs*7|1|0.23|ENSG00000143228|chr1:163336755-163336755|A/-|frameshift_variant;NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2 ENST00000487578.2_1_1:163295841-163298095:+|nuORF ENST00000487578.2_1_1:163295841-163298095:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7842407226562 2 543.235735 1084.45692 0.2494 0.00013548 0.13789 7.4909E-05 0.3873 0.00021039 543.2357295095987 94.595 0.4189 90.604 90.384 90.803 -3.9907 19 11 2 0 0 0 0.085258 1 18558 18558 60.39 29.753 2 3108400 55167 4466 36447 36468 53985 53985 69 -0.08193248534053055 YMMPVNSEV 9 Oxidation (M) _YM(Oxidation (M))MPVNSEV_ YM(0.883)M(0.117)PVNSEV YM(8.8)M(-8.8)PVNSEV 0 0 1 ENST00000487578.2_1_1:163295841-163298095:+|nuORF;NUF2|p.K115Nfs*7|1|0.23|ENSG00000143228|chr1:163336755-163336755|A/-|frameshift_variant;NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2 ENST00000487578.2_1_1:163295841-163298095:+|nuORF ENST00000487578.2_1_1:163295841-163298095:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7749633789062 2 543.235735 1084.45692 0.19157 0.00010407 -0.28055 -0.0001524 -0.088977 -4.8335E-05 543.2358390965421 94.691 0.7003 90.5 90.195 90.895 -4.1911 35 19 3 0 0 0 0.11447 1 18080 18080 50.855 12.881 2 3014900 55168 4466 36447 36468 53986 53986 69 -0.08193248534053055 YMMPVNSEV 9 Oxidation (M) _YM(Oxidation (M))MPVNSEV_ 0 0 1 ENST00000487578.2_1_1:163295841-163298095:+|nuORF;NUF2|p.K115Nfs*7|1|0.23|ENSG00000143228|chr1:163336755-163336755|A/-|frameshift_variant;NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant;ENSG00000143228|ENST00000271452|NUF2 ENST00000487578.2_1_1:163295841-163298095:+|nuORF ENST00000487578.2_1_1:163295841-163298095:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.235735 1084.45692 0.18288 9.9345E-05 -0.20869 -0.00011337 -0.025815 -1.4024E-05 543.2356633524458 90.249 0.55802 90.249 89.949 90.507 0 -0.17658 -3.9558E-05 NaN 60.39 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2914300 55169 4466 36447 36468 69 -0.08193248534053055 YMPAQLHP 8 Unmodified _YMPAQLHP_ 0 0 0 REV__OR1L8|p.T58A|1|0.25|ENSG00000171496|chr9:122568306-122568306|T/C|missense_variant REV__OR1L8|p.T58A|1|0.25|ENSG00000171496|chr9:122568306-122568306|T/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7356262207031 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 48.946 1 45.947 45.447 46.447 -2.999 0 0 0 0.23312 1 8941 8941 6.2058 6.1325 1 + 55170 24404 36448 36469 53987 53987 -0.02093826663121945 YMPDNFTM 8 Unmodified _YMPDNFTM_ 0 0 0 REV__LCT|p.E1065D|1|0.47|ENSG00000115850|chr2:135809152-135809152|C/A|missense_variant REV__LCT|p.E1065D|1|0.47|ENSG00000115850|chr2:135809152-135809152|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 509.7696838378906 2 509.704071 1017.39359 -0.31472 -0.00016041 0.52429 0.00026723 0.20957 0.00010682 510.2052179674401 144.16 0.48061 139.09 138.9 139.38 -5.0671 21 13 2 0 0 0 0.88821 1 27782 27782 0.62683 0 1 1871400 + 55171 23792 36449 36470 53988 53988 -0.11441189251286232 YMRQHLDH 8 Unmodified _YMRQHLDH_ 0 0 0 ENST00000527981.1_1_14:59950407-59951094:-|nuORF;ENSG00000126790|ENST00000247194|L3HYPDH ENST00000527981.1_1_14:59950407-59951094:-|nuORF ENST00000527981.1_1_14:59950407-59951094:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 550.2586059570312 2 550.258725 1098.5029 NaN NaN NaN NaN NaN NaN NaN 7.3459 1 6.3013 5.8013 6.8013 -1.0446 0 0 0 0.2396 1 618 618 0.0082765 0 1 55172 3447 36450 36471 53989 53989 -0.042414225169295605 YMWWWYVIIY 10 Unmodified _YMWWWYVIIY_ 0 0 0 tr|U7SGC3|U7SGC3_FUSNUPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lgtPE=3SV=1 tr|U7SGC3|U7SGC3_FUSNUPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lgtPE=3SV=1 tr|U7SGC3|U7SGC3_FUSNUPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lgtPE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 508.3013610839844 3 508.245782 1521.71552 -0.34562 -0.00017566 -0.40851 -0.00020762 -0.75413 -0.00038328 508.5787959498833 130.56 0.13719 125.72 125.6 125.74 -4.8355 5 3 2 0 0 0 1.1332 1 25060 25060 0.26539 0 1 1618900 55173 25897 36451 36472 53990 53990 -0.02447349229669271 YMYLLKDLWQ 10 Unmodified _YMYLLKDLWQ_ 0 0 0 ENSG00000171564|ENST00000302068|FGB ENSG00000171564|ENST00000302068|FGB ENSG00000171564|ENST00000302068|FGB MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2368469238281 3 458.237175 1371.68969 NaN NaN NaN NaN NaN NaN NaN 155.08 1 150.3 149.8 150.8 -4.7791 0 0 0 2.8426 1 30830 30830 0.043787 0 1 55174 6154 36452 36473 53991 53991 0.01871756528066726 YMYSFYYYFFK 11 Unmodified _YMYSFYYYFFK_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 811.3593139648438 2 811.357239 1620.69993 NaN NaN NaN NaN NaN NaN NaN 131.52 1 131.52 131.02 132.02 0 0 0 0 0.22632 1 26001 26001 0.026206 0.026206 1 55175 1552 36453 36474 53992 53992 -0.08559680537382519 YMYSFYYYFFK 11 Unmodified _YMYSFYYYFFK_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3565063476562 2 811.357239 1620.69993 NaN NaN NaN NaN NaN NaN NaN 99.373 1 95.24 94.74 95.74 -4.1326 0 0 0 0.23698 1 19520 19520 0.30703 0 1 55176 1552 36453 36474 53993 53993 -0.08559680537382519 YMYSFYYYFFK 11 Unmodified _YMYSFYYYFFK_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2681274414062 3 541.240585 1620.69993 0.50759 0.00027473 -0.11646 -6.3034E-05 0.39113 0.0002117 541.5742006895573 158.12 0.17433 152.85 152.76 152.94 -5.2712 6 4 2 0 0 0 0.66234 1 30692 30692 0.50596 0.33396 1 1423900 55177 1552 36453 36474 53994 53994 -0.08559680537382519 YMYSFYYYFFK 11 Unmodified _YMYSFYYYFFK_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3568115234375 2 811.357239 1620.69993 NaN NaN NaN NaN NaN NaN NaN 119.45 1 114.98 114.48 115.48 -4.467 0 0 0 0.23698 1 22994 22994 0 0 1 55178 1552 36453 36474 53995 53995 -0.08559680537382519 YNDYEDNN 8 Unmodified _YNDYEDNN_ 0 0 0 REV__MYT1L|p.N189K|1|0.12|ENSG00000186487|chr2:1923202-1923202|G/T|missense_variant REV__MYT1L|p.N189K|1|0.12|ENSG00000186487|chr2:1923202-1923202|G/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.688232421875 2 523.688518 1045.36248 -0.1278 -6.6926E-05 0.36363 0.00019043 0.23583 0.0001235 523.6886710826484 62.285 0.69028 62.285 62.039 62.73 0 25 19 2 0 0 0 0.77935 1 11936 11936 5.2307 0 1 1606500 + 55179 19034 36454 36475 53996 53996 -0.15838347760177385 YNFNRRYRRQP 11 Unmodified _YNFNRRYRRQP_ 0 0 0 REV__ENSG00000065978|ENST00000321358|YBX1 REV__ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4109497070312 2 785.410914 1568.80728 NaN NaN NaN NaN NaN NaN NaN 99.532 1 95.399 94.899 95.899 -4.1326 0 0 0 0.23698 1 19553 19553 1.3295 0.9789 1 + 55180 14196 36455 36476 53997 53997 0.04562470231712723 YNFNRRYRRQP 11 Unmodified _YNFNRRYRRQP_ 0 0 0 REV__ENSG00000065978|ENST00000321358|YBX1 REV__ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4110107421875 2 785.410914 1568.80728 NaN NaN NaN NaN NaN NaN NaN 155 1 149.72 149.22 150.22 -5.2854 0 0 0 0.23698 1 30060 30060 1.3295 0 1 + 55181 14196 36455 36476 53998 53998 0.04562470231712723 YNFNRRYRRQP 11 Unmodified _YNFNRRYRRQP_ 0 0 0 REV__ENSG00000065978|ENST00000321358|YBX1 REV__ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4099731445312 2 785.410914 1568.80728 NaN NaN NaN NaN NaN NaN NaN 155.58 1 150.3 149.8 150.8 -5.2854 0 0 0 0.23698 1 30175 30175 1.3295 0.13619 1 + 55182 14196 36455 36476 53999 53999 0.04562470231712723 YNFNRRYRRQP 11 Unmodified _YNFNRRYRRQP_ 0 0 0 REV__ENSG00000065978|ENST00000321358|YBX1 REV__ENSG00000065978|ENST00000321358|YBX1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.4100952148438 2 785.410914 1568.80728 NaN NaN NaN NaN NaN NaN NaN 164.08 1 159.02 158.52 159.52 -5.0648 0 0 0 0.23698 1 31974 31974 1.1933 0.12188 1 + 55183 14196 36455 36476 54000 54000 0.04562470231712723 YNGFLQLQWYL 11 Unmodified _YNGFLQLQWYL_ 0 0 0 REV__ENSG00000187527|ENST00000342358|ATP13A5 REV__ENSG00000187527|ENST00000342358|ATP13A5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.77313232421875 3 482.246839 1443.71869 NaN NaN NaN NaN NaN NaN NaN 133.35 1 128.71 128.21 129.21 -4.6399 0 0 0 0.22632 1 26290 26290 0.58532 0.55391 1 + 55184 19091 36456 36477 54001 54001 0.014576171487306055 YNGLSFVY 8 Unmodified _YNGLSFVY_ 0 0 0 nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant;PIEZO2|p.Y2489Sfs*7|1|0.06|ENSG00000154864|chr18:10680346-10680347|-/GG|frameshift_variant;PIEZO2|p.L2716Ffs*33|1|0.12|ENSG00000154864|chr18:10671638-10671639|-/A|frameshift_variant nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5-2|PIEZO2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.771240234375 2 481.734543 961.454533 NaN NaN NaN NaN NaN NaN NaN 118.28 1 113.87 113.37 114.37 -4.4088 0 0 0 0.23312 1 22761 22761 6.2058 6.0829 1 55185 5030 36457 36478 54002 54002 -0.027735928851939207 YNIFILLGL 9 Unmodified _YNIFILLGL_ 0 0 0 REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2786254882812 2 533.320786 1064.62702 NaN NaN NaN NaN NaN NaN NaN 145.53 1 140.86 140.36 141.36 -4.6694 0 0 0 0.23508 1 28847 28847 4.3292 0 1 + 55186 24901 36458 36479 54003 54003 0.09728978522184661 YNILKKRPVN 10 Unmodified _YNILKKRPVN_ 0 0 0 KLHL31|p.D105Rfs*11|1|0.26|ENSG00000124743|chr6:53654960-53654961|-/T|frameshift_variant KLHL31|p.D105Rfs*11|1|0.26|ENSG00000124743|chr6:53654960-53654961|-/T|frameshift_variant KLHL31|p.D105Rfs*11|1|0.26|ENSG00000124743|chr6:53654960-53654961|-/T|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 415.2439880371094 3 415.587307 1243.74009 -0.21461 -8.9189E-05 0.16751 6.9617E-05 -0.047094 -1.9572E-05 415.5873439923832 59.294 1.3012 56.383 55.857 57.158 -2.9105 99 36 4 0 0 0 1.1314 1 11349 11349 1.9275 1.2694 1 12391000 55187 12007 36459 36480 54004 54004 0.12797046968080394 YNKQVEEPS 9 Unmodified _YNKQVEEPS_ 0 0 0 REV__ENST00000573450.5_1_16:4390322-4391533:-|nuORF REV__ENST00000573450.5_1_16:4390322-4391533:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7733764648438 2 547.261653 1092.50875 -0.13481 -7.3777E-05 0.48535 0.00026562 0.35054 0.00019184 547.2619175041351 24.847 0.8925 22.994 22.435 23.328 -1.8534 54 25 4 0 0 0 0.15214 1 4030 4030 43.858 3.9086 1 6368000 + 55188 19702 36460 36481 54005 54005 -0.03380045524295383 YNLHEEME 8 Unmodified _YNLHEEME_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant;ENST00000467219.5_1_12:124265674-124298205:+|nuORF;nc|ENSG00000197653|Q8IVF4-2|DNAH10;DNAH10|p.P1206Lfs*12|1|0.08|ENSG00000197653|chr12:123819219-123819219|C/-|frameshift_variant;DNAH10|p.E1360*|1|0.18|ENSG00000197653|chr12:123830579-123830580|-/T|frameshift_variant;DNAH10|p.K1737Nfs*15|2|0.42|ENSG00000197653|chr12:123845799-123845799|A/-|frameshift_variant nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2650146484375 2 532.721307 1063.42806 0.12087 6.4388E-05 1.468 0.00078205 1.5889 0.00084644 533.2243303434133 142.1 0.20786 137.45 137.31 137.52 -4.6493 8 5 2 0 0 0 1.0147 1 28095 28095 9.3474 4.5914 1 1354400 55189 7388 36461 36482 54006 54006 -0.10111649838813719 YNLPIMVTD 9 Unmodified _YNLPIMVTD_ 0 0 0 nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13 nc|ENSG00000140945|P55290-5|CDH13 nc|ENSG00000140945|P55290-5|CDH13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2780151367188 2 533.267893 1064.52123 0.43424 0.00023157 2.7894 0.0014875 3.2236 0.0017191 533.7721709708384 153.19 0.10843 147.96 147.89 148 -5.2209 4 2 2 0 0 0 0.55979 1 29683 29683 15.847 1.4418 1 536460 55190 4334 36462 36483 54007 54007 -0.00844725385604761 YNMNGMWECL 10 Unmodified _YNMNGMWECL_ 0 0 0 REV__SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant REV__SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7789916992188 2 630.745944 1259.47734 NaN NaN NaN NaN NaN NaN NaN 144.95 1 140.01 139.51 140.51 -4.9445 0 0 0 0.22588 1 28012 28012 3.9444 0.3479 1 + 55191 18883 36463 36484 54008 54008 -0.1420240114587159 YNNIARMAI 9 Unmodified _YNNIARMAI_ 0 0 0 REV__ENSG00000169397|ENST00000304639|RNASE3 REV__ENSG00000169397|ENST00000304639|RNASE3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2671508789062 2 533.279126 1064.5437 NaN NaN NaN NaN NaN NaN NaN 142.4 1 137.74 137.24 138.24 -4.656 0 0 0 0.20628 1 28148 28148 21.747 6.9084 1 + 55192 18098 36464 36485 54009 54009 0.014009188026875563 YNNNNNKNLNE 11 Unmodified _YNNNNNKNLNE_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-7|XIRP2 REV__nc|ENSG00000163092|A4UGR9-7|XIRP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 450.9149169921875 3 450.872612 1349.59601 NaN NaN NaN NaN NaN NaN NaN 6.5455 1 6.5455 6.0455 7.0455 0 0 0 0 0.23698 1 504 504 0 0 1 + 55193 24129 36465 36486 54010 54010 -0.06480871320650294 YNQTKNIV 8 Unmodified _YNQTKNIV_ 0 0 0 ENST00000458247.1_1_1:172718057-172718594:+|nuORF;ENSG00000144659|ENST00000650617|SLC25A38 ENST00000458247.1_1_1:172718057-172718594:+|nuORF ENST00000458247.1_1_1:172718057-172718594:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.26580810546875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 53.065 1 53.065 52.565 53.565 0 0 0 0 0.18898 1 10097 10097 28.487 2.1456 1 55194 4567 36466 36487 54011 54011 0.02332883409144415 YNRNIAKES 9 Unmodified _YNRNIAKES_ 0 0 0 REV__ENSG00000157578|ENST00000288350|LCA5L REV__ENSG00000157578|ENST00000288350|LCA5L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7811279296875 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 120.85 1 116.33 115.83 116.83 -4.5221 0 0 0 0.19674 1 23823 23823 0.12781 0.0049496 1 + 55195 17299 36467 36488 54012 54012 0.008587693237814165 YNRVWIPD 8 Unmodified _YNRVWIPD_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.277099609375 2 531.771991 1061.52943 0.33382 0.00017752 0.079439 4.2243E-05 0.41326 0.00021976 531.7718160536707 142.29 0.98885 137.4 137 137.99 -4.8982 75 27 4 0 0 0 0.73936 1 27491 27491 8.5933 0 1 8727700 55196 3544 36468 36489 54013 54013 0.0011258964602802735 YNRVWIPD 8 Unmodified _YNRVWIPD_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 531.771991 1061.52943 0.092267 4.9065E-05 0.40854 0.00021725 0.5008 0.00026631 531.7720653917436 137.74 0.8094 137.74 137.27 138.08 0 0.17979 0.00028555 NaN 8.5933 55 22 3 NaN NaN NaN NaN 0 NaN NaN 0 11759000 55197 3544 36468 36489 0.0011258964602802735 YNRVWIPD 8 Unmodified _YNRVWIPD_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 531.771991 1061.52943 0.094663 5.0339E-05 0.1434 7.6256E-05 0.23806 0.00012659 531.7720525350519 142.27 0.83699 137.62 137.19 138.03 -4.656 0.056279 3.5646E-06 NaN 8.5933 44 23 2 NaN NaN NaN NaN 0 NaN NaN 0 12300000 55198 3544 36468 36489 0.0011258964602802735 YNRVWIPD 8 Unmodified _YNRVWIPD_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 531.771991 1061.52943 0.41855 0.00022257 -0.068292 -3.6316E-05 0.35026 0.00018626 531.7718540167235 142.52 0.9675 137.49 137.03 138 -5.0261 -0.069 -0.00022158 NaN 8.5933 61 27 3 NaN NaN NaN NaN 0 NaN NaN 0 9539100 55199 3544 36468 36489 0.0011258964602802735 YNRVWIPD 8 Unmodified _YNRVWIPD_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.I480Nfs*10|1|0.5|ENSG00000128833|chr15:52253414-52253415|-/T|frameshift_variant;MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 531.771991 1061.52943 0.33382 0.00017752 0.079439 4.2243E-05 0.41326 0.00021976 531.7718160536707 142.29 0.98885 137.4 137 137.99 -4.8982 -0.16707 -6.446E-05 NaN 8.5933 75 27 4 NaN NaN NaN NaN 0 NaN NaN 0 8727700 55200 3544 36468 36489 0.0011258964602802735 YNTWKYLV 8 Unmodified _YNTWKYLV_ 0 0 0 REV__nc|ENSG00000106086|Q96JA3-3|PLEKHA8 REV__nc|ENSG00000106086|Q96JA3-3|PLEKHA8 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7838745117188 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 8.493 1 7.6987 7.1987 8.1987 -0.79424 0 0 0 0.21486 1 887 887 0.79363 0 1 + 55201 15032 36469 36490 54014 54014 0.01522644448596111 YNVFFAGND 9 Unmodified _YNVFFAGND_ 0 0 0 REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6854248046875 2 523.732532 1045.45051 NaN NaN NaN NaN NaN NaN NaN 136.19 1 131.55 131.05 132.05 -4.6399 0 0 0 0.19698 1 26873 26873 1.6919 0 1 + 55202 16381 36470 36491 54015 54015 -0.0703968237889967 YNVPLEPP 8 Unmodified _YNVPLEPP_ 0 0 0 REV__ENST00000478415.1_1_X:79999455-80064970:-|nuORF REV__ENST00000478415.1_1_X:79999455-80064970:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.16497802734375 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 115.07 1 110.52 110.02 111.02 -4.555 0 0 0 0.21486 1 22092 22092 1.6526 0.17072 1 + 55203 13212 36471 36492 54016 54016 0.00354693631857117 YNVPVLKRMWY 11 Unmodified _YNVPVLKRMWY_ 0 0 0 ENST00000477892.5_1_3:122128703-122128778:+|nuORF ENST00000477892.5_1_3:122128703-122128778:+|nuORF ENST00000477892.5_1_3:122128703-122128778:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.26416015625 3 490.263835 1467.76968 NaN NaN NaN NaN NaN NaN NaN 15.505 1 14.283 13.783 14.783 -1.2219 0 0 0 0.22632 1 2176 2176 0.50596 0 1 55204 10308 36472 36493 54017 54017 0.05450242921892823 YNWFSFRNWFY 11 Unmodified _YNWFSFRNWFY_ 0 0 0 REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7935791015625 3 543.913971 1628.72008 NaN NaN NaN NaN NaN NaN NaN 132.17 1 132.17 131.67 132.67 0 0 0 0 0.23698 1 26128 26128 0.094841 0 1 + 55205 14151 36473 36494 54018 54018 -0.06912748762533738 YNWFSFRNWFY 11 Unmodified _YNWFSFRNWFY_ 0 0 0 REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3666381835938 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 137.88 1 137.88 137.38 138.38 0 0 0 0 0.22632 1 27362 27362 0 0 1 + 55206 14151 36473 36494 54019 54019 -0.06912748762533738 YNWFSFRNWFY 11 Unmodified _YNWFSFRNWFY_ 0 0 0 REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3665771484375 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 139.79 1 135.14 134.64 135.64 -4.6439 0 0 0 0.22632 1 27597 27597 0 0 1 + 55207 14151 36473 36494 54020 54020 -0.06912748762533738 YNWFSFRNWFY 11 Unmodified _YNWFSFRNWFY_ 0 0 0 REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3672485351562 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 163.15 1 158.36 157.86 158.86 -4.7898 0 0 0 0.22632 1 32507 32507 0 0 1 + 55208 14151 36473 36494 54021 54021 -0.06912748762533738 YNWFSFRNWFY 11 Unmodified _YNWFSFRNWFY_ 0 0 0 REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.3662109375 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 69.325 1 65.789 65.289 66.289 -3.5362 0 0 0 0.22632 1 13050 13050 0 0 1 + 55209 14151 36473 36494 54022 54022 -0.06912748762533738 YNWFSFRNWFY 11 Unmodified _YNWFSFRNWFY_ 0 0 0 REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 815.36669921875 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 149.88 1 144.68 144.18 145.18 -5.1994 0 0 0 0.23698 1 29035 29035 0 0 1 + 55210 14151 36473 36494 54023 54023 -0.06912748762533738 YNWFSFRNWFY 11 Unmodified _YNWFSFRNWFY_ 0 0 0 REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.366455078125 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 127.97 1 123.26 122.76 123.76 -4.7003 0 0 0 0.22632 1 24620 24620 0 0 1 + 55211 14151 36473 36494 54024 54024 -0.06912748762533738 YNWFSFRNWFY 11 Unmodified _YNWFSFRNWFY_ 0 0 0 REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3665771484375 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 136.19 1 131.36 130.86 131.86 -4.8307 0 0 0 0.22632 1 26222 26222 0 0 1 + 55212 14151 36473 36494 54025 54025 -0.06912748762533738 YNWFSFRNWFY 11 Unmodified _YNWFSFRNWFY_ 0 0 0 REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.366455078125 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 176.94 1 172.04 171.54 172.54 -4.9008 0 0 0 0.22632 1 35285 35285 0 0 1 + 55213 14151 36473 36494 54026 54026 -0.06912748762533738 YNWFSFRNWFY 11 Unmodified _YNWFSFRNWFY_ 0 0 0 REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant REV__SPAG4|p.P393Qfs*7|3|0.3|ENSG00000061656|chr20:35620881-35620881|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.366455078125 2 815.367318 1628.72008 NaN NaN NaN NaN NaN NaN NaN 176.96 1 172.06 171.56 172.56 -4.9008 0 0 0 0.23698 1 35287 35287 0 0 1 + 55214 14151 36473 36494 54027 54027 -0.06912748762533738 YNYLPEGP 8 Unmodified _YNYLPEGP_ 0 0 0 REV__nc|ENSG00000163378|Q5NDL2-2|EOGT REV__nc|ENSG00000163378|Q5NDL2-2|EOGT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 318.1901550292969 3 318.151876 951.433798 -0.21477 -6.8329E-05 -0.10686 -3.3998E-05 -0.32163 -0.00010233 318.15180753527267 63.134 0.61066 60.136 59.844 60.455 -2.9975 50 17 4 0 0 0 1.0277 1 12181 12181 0.40072 0 1 3587600 + 55215 17566 36474 36495 54028 54028 -0.04386183264853116 YNYSFDRDYII 11 Unmodified _YNYSFDRDYII_ 0 0 0 REV__ENSG00000167325|ENST00000300738|RRM1 REV__ENSG00000167325|ENST00000300738|RRM1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2673034667969 3 490.229625 1467.66705 NaN NaN NaN NaN NaN NaN NaN 119.99 1 115.47 114.97 115.97 -4.5221 0 0 0 0.22632 1 23659 23659 3.0723 3.0663 1 + 55216 17918 36475 36496 54029 54029 -0.048081713358214984 YNYVAVLS 8 Unmodified _YNYVAVLS_ 0 0 0 ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 109.75 1 109.75 109.25 110.25 0 0 0 0 0.21486 1 21580 21580 3.9444 0 1 55217 4139 36476 36497 54030 54030 0.003546936318684857 YNYVAVLS 8 Unmodified _YNYVAVLS_ 0 0 0 ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 310.1649475097656 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 110.23 1 110.23 109.73 110.73 0 0 0 0 0.23584 1 21679 21679 0.12286 0 1 55218 4139 36476 36497 54031 54031 0.003546936318684857 YPAGTHVVL 9 Unmodified _YPAGTHVVL_ 0 0 0 REV__SEMA3F|p.R456H|1|0.24|ENSG00000001617|chr3:50184725-50184725|G/A|missense_variant REV__SEMA3F|p.R456H|1|0.24|ENSG00000001617|chr3:50184725-50184725|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7222900390625 2 478.763635 955.512717 NaN NaN NaN NaN NaN NaN NaN 154.57 1 149.79 149.29 150.29 -4.7791 0 0 0 0.20155 1 30726 30726 23.148 3.8914 1 + 55219 24602 36477 36498 54032 54032 0.03318088760090632 YPASGHTTPL 10 Unmodified _YPASGHTTPL_ 0 0 0 nc|ENSG00000087303|Q14112-2|NID2;NID2|p.K1297Nfs*26|1|0.42|ENSG00000087303|chr14:52006650-52006650|T/-|frameshift_variant;ENSG00000087303|ENST00000216286|NID2 nc|ENSG00000087303|Q14112-2|NID2 nc|ENSG00000087303|Q14112-2|NID2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2625122070312 2 522.261456 1042.50836 -0.47608 -0.00024864 0.51656 0.00026978 0.04048 2.1141E-05 522.2616519385192 93.321 0.74767 89.178 88.802 89.55 -4.1435 37 21 2 0 0 0 0.48196 1 17732 17732 0.84494 0.25962 1 2193200 55220 1717 36478 36499 54033 54033 -0.011194204534831442 YPCLKCRY 8 Unmodified _YPCLKCRY_ 0 0 0 REV__nc|ENSG00000148143|Q96JM2-2|ZNF462 REV__nc|ENSG00000148143|Q96JM2-2|ZNF462 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6848754882812 2 523.251523 1044.48849 -0.60809 -0.00031818 -0.26093 -0.00013653 -0.86902 -0.00045472 523.2513762278965 36.615 1.3556 34.146 33.728 35.083 -2.4688 92 38 4 0 0 0 8448 1 6818 6818 6.2058 1.3088 1 64897000 + 55221 16962 36479 36500 54034 54034 -0.031972109894468304 YPDDDDDSTDS 11 Unmodified _YPDDDDDSTDS_ 0 0 0 REV__SHPRH|p.L762Wfs*6|1|0.29|ENSG00000146414|chr6:145941828-145941828|A/-|frameshift_variant REV__SHPRH|p.L762Wfs*6|1|0.29|ENSG00000146414|chr6:145941828-145941828|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7686157226562 2 622.707302 1243.40005 NaN NaN NaN NaN NaN NaN NaN 149.8 1 149.8 149.3 150.3 0 0 0 0 0.23698 1 29987 29987 1.4819 0.8804 1 + 55222 16888 36480 36501 54035 54035 -0.21191346075875117 YPDDDDDSTDS 11 Unmodified _YPDDDDDSTDS_ 0 0 0 REV__SHPRH|p.L762Wfs*6|1|0.29|ENSG00000146414|chr6:145941828-145941828|A/-|frameshift_variant REV__SHPRH|p.L762Wfs*6|1|0.29|ENSG00000146414|chr6:145941828-145941828|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7647094726562 2 622.707302 1243.40005 NaN NaN NaN NaN NaN NaN NaN 166.96 1 162.01 161.51 162.51 -4.948 0 0 0 0.23698 1 32789 32789 1.3295 0 1 + 55223 16888 36480 36501 54036 54036 -0.21191346075875117 YPDHPNNFTV 10 Unmodified _YPDHPNNFTV_ 0 0 0 REV__ENSG00000186009|ENST00000335288|ATP4B REV__ENSG00000186009|ENST00000335288|ATP4B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.28271484375 2 602.275095 1202.53564 NaN NaN NaN NaN NaN NaN NaN 116.05 1 111.47 110.97 111.97 -4.5815 0 0 0 2.8426 1 22274 22274 0.26539 0.13757 1 + 55224 19006 36481 36502 54037 54037 -0.05752936913108897 YPDMGATPED 10 Unmodified _YPDMGATPED_ 0 0 0 REV__ABCA2|p.V1154M|1|0.32|ENSG00000107331|chr9:137015729-137015729|C/T|missense_variant REV__ABCA2|p.V1154M|1|0.32|ENSG00000107331|chr9:137015729-137015729|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7787475585938 2 548.218597 1094.42264 0.32652 0.000179 -4.2208 -0.0023139 -3.8943 -0.0021349 548.7175428696129 129.5 0.20236 129.5 129.33 129.53 0 7 5 2 0 0 0 0.90091 1 25554 25554 10.074 5.7447 1 1010300 + 55225 12886 36482 36503 54038 54038 -0.1207937342128389 YPELFSERY 9 Unmodified _YPELFSERY_ 0 0 0 REV__TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant REV__TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2972412109375 2 602.287671 1202.56079 NaN NaN NaN NaN NaN NaN NaN 123.2 1 123.2 122.7 123.7 0 0 0 0 0.23508 1 24282 24282 8.5933 3.2964 1 + 55226 14913 36483 36504 54039 54039 -0.03238882110508712 YPERRRFA 8 Unmodified _YPERRRFA_ 0 0 0 REV__ENSG00000110811|ENST00000290510|P3H3 REV__ENSG00000110811|ENST00000290510|P3H3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7818603515625 2 547.796332 1093.57811 NaN NaN NaN NaN NaN NaN NaN 132.32 1 127.68 127.18 128.18 -4.6399 0 0 0 0.21452 1 26084 26084 13.508 3.434 1 + 55227 15220 36484 36505 54040 54040 0.03506503005792183 YPEVAHFDPE 10 Unmodified _YPEVAHFDPE_ 0 0 0 REV__nc|ENSG00000115415|P42224-2|STAT1 REV__nc|ENSG00000115415|P42224-2|STAT1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.28662109375 2 602.269478 1202.5244 NaN NaN NaN NaN NaN NaN NaN 130.51 1 125.74 125.24 126.24 -4.7725 0 0 0 0.22588 1 25116 25116 6.7232 0.96273 1 + 55228 15428 36485 36506 54041 54041 -0.06875759007243687 YPFNDFKI 8 Unmodified _YPFNDFKI_ 0 0 0 REV__tr|U7SU22|U7SU22_FUSNUFlagellarmotorswitchproteinFliN-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01070PE=4SV=1 REV__tr|U7SU22|U7SU22_FUSNUFlagellarmotorswitchproteinFliN-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01070PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2610473632812 2 522.263468 1042.51238 NaN NaN NaN NaN NaN NaN NaN 41.37 1 38.88 38.38 39.38 -2.4896 0 0 0 0.21039 1 7423 7423 16.942 6.8684 1 + 55229 25137 36486 36507 54042 54042 -0.0071733095976469485 YPGAHEELK 9 Unmodified _YPGAHEELK_ 0 0 0 ENSG00000184564|ENST00000647374|SLITRK6;SLITRK6|p.A788V|1|0.22|ENSG00000184564|chr13:85794146-85794146|G/A|missense_variant ENSG00000184564|ENST00000647374|SLITRK6 ENSG00000184564|ENST00000647374|SLITRK6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2755737304688 2 522.261456 1042.50836 -0.22089 -0.00011536 -1.05 -0.00054837 -1.2709 -0.00066373 522.7623353495727 82.548 0.14439 78.94 78.849 78.993 -3.6079 5 3 2 0 0 0 0.41081 1 16127 16127 1.2148 1.1508 1 500380 55230 6918 36487 36508 54043 54043 -0.011194204534831442 YPGGGGGG 8 Unmodified _YPGGGGGG_ 0 0 0 ENSG00000185668|ENST00000373012|POU3F1 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 311.2045593261719 2 311.134996 620.255439 NaN NaN NaN NaN NaN NaN NaN 9.1025 1 9.1025 8.6025 9.6025 0 0 0 0 0.21486 1 1018 1018 0 0 1 + 55231 16781 36488 36509 54044 54044 -0.06987808393228079 YPGGGGGG 8 Unmodified _YPGGGGGG_ 0 0 0 ENSG00000185668|ENST00000373012|POU3F1 REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant REV__UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 311.20465087890625 2 311.134996 620.255439 NaN NaN NaN NaN NaN NaN NaN 10.317 1 9.2234 8.7234 9.7234 -1.0936 0 0 0 0.21486 1 1166 1166 0 0 1 + 55232 16781 36488 36509 54045 54045 -0.06987808393228079 YPGRKPSYQ 9 Unmodified _YPGRKPSYQ_ 0 0 0 REV__ENSG00000188056|ENST00000341495|TREML4 REV__ENSG00000188056|ENST00000341495|TREML4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7880249023438 2 548.282723 1094.55089 0.21022 0.00011526 -0.99436 -0.00054519 -0.78414 -0.00042993 548.2818897211838 98.212 0.62309 93.943 93.569 94.192 -4.2692 31 17 3 0 0 0 0.8319 1 18810 18810 12.532 8.9351 1 2243400 + 55233 19130 36489 36510 54046 54046 0.00739974674752375 YPGRKPSYQ 9 Unmodified _YPGRKPSYQ_ 0 0 0 REV__ENSG00000188056|ENST00000341495|TREML4 REV__ENSG00000188056|ENST00000341495|TREML4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 548.282723 1094.55089 0.2194 0.00012029 -1.0392 -0.00056976 -0.81976 -0.00044946 548.7835527730765 97.919 0.58826 93.822 93.537 94.125 -4.0978 -0.049676 -0.00010015 NaN 12.532 33 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3596600 + 55234 19130 36489 36510 0.00739974674752375 YPHPPPPYQ 9 Unmodified _YPHPPPPYQ_ 0 0 0 REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 365.51116943359375 3 365.846787 1094.51853 -0.1936 -7.0829E-05 -0.79748 -0.00029176 -0.99108 -0.00036259 365.84648717969753 35.502 0.68683 35.502 35.238 35.925 0 47 19 3 0 0 0 0.58921 1 6474 6474 8.1555 0 1 18654000 + 55235 13760 36490 36511 54047 54047 -0.024948127282641508 YPITVKFWKRM 11 Unmodified _YPITVKFWKRM_ 0 0 0 REV__nc|ENSG00000290798|Q9H1B4-3|NXF5 REV__nc|ENSG00000290798|Q9H1B4-3|NXF5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.26416015625 3 490.275964 1467.80606 NaN NaN NaN NaN NaN NaN NaN 153.83 1 149.06 148.56 149.56 -4.7684 0 0 0 0.22632 1 30569 30569 1.4551 0 1 + 55236 24325 36491 36512 54048 54048 0.0908711981860506 YPITVKFWKRM 11 Unmodified _YPITVKFWKRM_ 0 0 0 REV__nc|ENSG00000290798|Q9H1B4-3|NXF5 REV__nc|ENSG00000290798|Q9H1B4-3|NXF5 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2640075683594 3 490.275964 1467.80606 NaN NaN NaN NaN NaN NaN NaN 33.075 1 30.928 30.428 31.428 -2.1468 0 0 0 0.22632 1 5759 5759 0.50596 0.33396 1 + 55237 24325 36491 36512 54049 54049 0.0908711981860506 YPKLFKKL 8 Unmodified _YPKLFKKL_ 0 0 0 REV__ENST00000465172.5_1_3:141595540-141640837:+|nuORF REV__ENST00000465172.5_1_3:141595540-141640837:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.4593811035156 3 346.223306 1035.64809 NaN NaN NaN NaN NaN NaN NaN 69.821 1 66.642 66.142 67.142 -3.1796 0 0 0 0.21486 1 13580 13580 0.45834 0 1 + 55238 21946 36492 36513 54050 54050 0.13168988621691824 YPKNKEEDE 9 Unmodified _YPKNKEEDE_ 0 0 0 WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant;nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87;WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant;WDR87|p.Q1927Tfs*32|1|0.44|ENSG00000171804|chr19:37887775-37887776|-/T|frameshift_variant;WDR87|p.R2063Gfs*11|1|0.12|ENSG00000171804|chr19:37887367-37887367|T/-|frameshift_variant;WDR87|p.R2063Kfs*25|1|0.32|ENSG00000171804|chr19:37887366-37887367|-/T|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant WDR87|p.A2794Pfs*4|1|0.26|ENSG00000171804|chr19:37885175-37885175|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3173217773438 2 576.264393 1150.51423 NaN NaN NaN NaN NaN NaN NaN 131.44 1 131.44 130.94 131.94 0 0 0 0 0.23508 1 25985 25985 7.9102 0.62092 1 55239 6172 36493 36514 54051 54051 -0.05500366732485418 YPKSEIIYTW 10 Unmodified _YPKSEIIYTW_ 0 0 0 GABRA4|p.M200I|1|0.17|ENSG00000109158|chr4:46974353-46974353|C/A|missense_variant;GABRA6|p.G191Dfs*6|1|0.13|ENSG00000145863|chr5:161689671-161689671|A/-|frameshift_variant;ENSG00000145863|ENST00000274545|GABRA6 GABRA4|p.M200I|1|0.17|ENSG00000109158|chr4:46974353-46974353|C/A|missense_variant GABRA4|p.M200I|1|0.17|ENSG00000109158|chr4:46974353-46974353|C/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 433.8911437988281 3 433.892173 1298.65469 NaN NaN NaN NaN NaN NaN NaN 142 1 137.35 136.85 137.85 -4.6493 0 0 0 0.22588 1 28063 28063 2.086 0 1 55240 4625 36494 36515 54052 54052 0.01730836991760043 YPMPYNPSI 9 Unmodified _YPMPYNPSI_ 0 0 0 REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.27783203125 2 541.254785 1080.49502 0.31092 0.00016829 -1.3177 -0.00071323 -1.0068 -0.00054495 541.7552523333961 144.84 0.17599 144.84 144.75 144.93 0 7 4 2 0 0 0 0.76271 1 28944 28944 14.838 1.7958 1 2716600 + 55241 13614 36495 36516 54053 54053 -0.04200994557095328 YPMPYNPSI 9 Unmodified _YPMPYNPSI_ 0 0 0 REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant REV__CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 541.254785 1080.49502 0.31378 0.00016983 -0.13674 -7.4014E-05 0.17704 9.5821E-05 541.7563450535022 149.25 0.21495 144.52 144.34 144.56 -4.7323 -0.15926 0.00090463 NaN 14.838 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3031600 + 55242 13614 36495 36516 -0.04200994557095328 YPMRRSGL 8 Unmodified _YPMRRSGL_ 0 0 0 REV__ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant REV__ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.259765625 2 490.260736 978.50692 NaN NaN NaN NaN NaN NaN NaN 62.803 1 59.387 58.887 59.887 -3.4158 0 0 0 0.22665 1 11729 11729 6.3914 0 1 + 55243 13813 36496 36517 54054 54054 0.01680666976790235 YPMYETVIY 9 Unmodified _YPMYETVIY_ 0 0 0 REV__nc|ENSG00000143322|P42684-2|ABL2 REV__nc|ENSG00000143322|P42684-2|ABL2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2594604492188 2 589.775551 1177.53655 0.45192 0.00026653 1.1264 0.00066432 1.5783 0.00093085 590.2786450317408 132.52 0.1375 127.66 127.6 127.74 -4.8527 5 3 2 0 0 0 0.5428 1 25468 25468 4.897 2.3985 1 1155700 + 55244 16714 36497 36518 54055 54055 -0.04511858588398354 YPNFRSLF 8 Unmodified _YPNFRSLF_ 0 0 0 ENST00000373824.8_1_1:28929782-28929908:-|nuORF ENST00000373824.8_1_1:28929782-28929908:-|nuORF ENST00000373824.8_1_1:28929782-28929908:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2662353515625 2 522.269084 1042.52362 NaN NaN NaN NaN NaN NaN NaN 139.78 1 135.14 134.64 135.64 -4.6439 0 0 0 0.22674 1 27596 27596 0.68139 0.3018 1 55245 9205 36498 36519 54056 54056 0.004054911343473577 YPPVCEIF 8 Unmodified _YPPVCEIF_ 0 0 0 nc|ENSG00000196345|Q9P0L1-2|ZKSCAN7;ENSG00000196345|ENST00000426540|ZKSCAN7 nc|ENSG00000196345|Q9P0L1-2|ZKSCAN7 nc|ENSG00000196345|Q9P0L1-2|ZKSCAN7 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 323.1458740234375 3 323.157973 966.45209 -0.27114 -8.7622E-05 -1.2742 -0.00041176 -1.5453 -0.00049938 323.1575157471273 107.04 0.41113 107.04 106.86 107.27 0 18 11 2 0 0 0 1.0277 1 21052 21052 0.40072 0 1 957760 55246 7257 36499 36520 54057 54057 -0.03247764614513926 YPPVSQNLY 9 Unmodified _YPPVSQNLY_ 0 0 0 REV__CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant REV__CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2830200195312 2 540.771657 1079.52876 0.29207 0.00015795 -1.4789 -0.00079974 -1.1868 -0.0006418 541.2725645136616 127.59 0.83769 127.59 127.3 128.14 0 34 23 2 0 0 0 0.44932 1 25177 25177 22.736 1.8651 1 5245800 + 55247 13573 36500 36521 54058 54058 -0.007822497936558648 YPQILRQR 8 Unmodified _YPQILRQR_ 0 0 0 REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant REV__ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 359.8699035644531 3 358.545331 1072.61416 -0.42921 -0.00015389 0.4462 0.00015998 0.01699 6.0917E-06 358.5454292585712 56.137 1.0335 53.243 52.651 53.685 -2.8944 67 29 4 0 0 0 8448 1 10737 10737 3.2813 0 1 26729000 + 55248 14319 36501 36522 54059 54059 0.08075960182668496 YPQMCFDEDI 10 Unmodified _YPQMCFDEDI_ 0 0 0 ENSG00000140623|ENST00000268231|SEPTIN12;nc|ENSG00000140623|Q8IYM1-2|SEPTIN12 ENSG00000140623|ENST00000268231|SEPTIN12 ENSG00000140623|ENST00000268231|SEPTIN12 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7508544921875 2 630.749207 1259.48386 NaN NaN NaN NaN NaN NaN NaN 118.4 1 113.9 113.4 114.4 -4.502 0 0 0 0.22588 1 23345 23345 6.7232 2.7788 1 55249 4317 36502 36523 54060 54060 -0.1355018471351741 YPQRVPDVL 9 Unmodified _YPQRVPDVL_ 0 0 0 REV__nc|ENSG00000110422|Q9H422-2|HIPK3;REV__nc|ENSG00000163349|Q86Z02-2|HIPK1 REV__nc|ENSG00000163349|Q86Z02-2|HIPK1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7925415039062 2 543.800749 1085.58694 NaN NaN NaN NaN NaN NaN NaN 127.65 0.99999 127.65 127.15 128.15 0 0 0 0 0.23508 1 25198 25198 12.532 0.89125 1 + 55250 15200;17561 36503 36524 54061 54061 0.04757431851612637 YPQWRRIHKSI 11 Unmodified _YPQWRRIHKSI_ 0 0 0 nc|ENSG00000104643|Q96QG7-2|MTMR9;ENST00000530200.1_1_8:11152806-11180294:+|nuORF;ENSG00000104643|ENST00000221086|MTMR9 nc|ENSG00000104643|Q96QG7-2|MTMR9 nc|ENSG00000104643|Q96QG7-2|MTMR9 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.375 2 742.417677 1482.8208 NaN NaN NaN NaN NaN NaN NaN 140.83 1 135.84 135.34 136.34 -4.9877 0 0 0 0.22632 1 27110 27110 0.00056442 0 1 55251 2246 36504 36525 54062 54062 0.09870328010970297 YPRFDSFY 8 Unmodified _YPRFDSFY_ 0 0 0 REV__ENSG00000174839|ENST00000311128|DENND6A REV__ENSG00000174839|ENST00000311128|DENND6A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7791137695312 2 547.750724 1093.4869 0.062757 3.4375E-05 2.7771 0.0015212 2.8399 0.0015556 548.2556606269267 131.89 0.20694 127.04 126.94 127.15 -4.8527 6 5 2 0 0 0 0.69085 1 25341 25341 15.768 4.6538 1 1044100 + 55252 13665 36505 36526 54063 54063 -0.056108054822061604 YPRMTSVIQ 9 Unmodified _YPRMTSVIQ_ 0 0 0 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7874755859375 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 53.019 1 53.019 52.519 53.519 0 0 0 0 0.19646 1 10088 10088 0.40827 0.3444 1 + 55253 15389 36506 36527 54064 54064 0.015977855998698942 YPRRLHGRA 9 Unmodified _YPRRLHGRA_ 0 0 0 nc|ENSG00000147485|A1KZ92-2|PXDNL;PXDNL|p.T1359Qfs*25|1|0.33|ENSG00000147485|chr8:51339695-51339695|T/-|frameshift_variant;ENSG00000147485|ENST00000356297|PXDNL nc|ENSG00000147485|A1KZ92-2|PXDNL nc|ENSG00000147485|A1KZ92-2|PXDNL MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.8770446777344 3 375.884458 1124.63154 NaN NaN NaN NaN NaN NaN NaN 9.1665 1 8.3723 7.8723 8.8723 -0.79424 0 0 0 0.23508 1 1035 1035 0 0 1 55254 4706 36507 36528 54065 54065 0.07421300508326567 YPSGSAPA 8 Unmodified _YPSGSAPA_ 0 0 0 REV__ENSG00000164715|ENST00000297293|LMTK2 REV__ENSG00000164715|ENST00000297293|LMTK2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2122497558594 2 375.176861 748.339169 NaN NaN NaN NaN NaN NaN NaN 65.468 1 62.421 61.921 62.921 -3.047 0 0 0 0.23899 1 12672 12672 1.3295 0 1 + 55255 17704 36508 36529 54066 54066 -0.04506697016199723 YPSQGLGQ 8 Unmodified _YPSQGLGQ_ 0 0 0 ENST00000558641.2_1_15:101402159-101407614:+|nuORF ENST00000558641.2_1_15:101402159-101407614:+|nuORF ENST00000558641.2_1_15:101402159-101407614:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 426.2216796875 2 425.208692 848.402832 0.33493 0.00014241 0.17726 7.5372E-05 0.51219 0.00021779 425.2086904855245 70.616 0.74262 67.037 66.625 67.367 -3.5798 43 20 3 0 0 0 8448 1 13303 13303 1.7423 1.1154 1 2489200 55256 11266 36509 36530 54067 54067 -0.02743336579089828 YPTMPRTQW 9 Unmodified _YPTMPRTQW_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;DNAH1|p.K1480Sfs*13|1|0.07|ENSG00000114841|chr3:52359941-52359941|G/-|frameshift_variant nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2547607421875 2 590.284408 1178.55426 NaN NaN NaN NaN NaN NaN NaN 147.04 1 142.04 141.54 142.54 -5 0 0 0 0.19646 1 28459 28459 0.12781 0.06395 1 55257 2813 36510 36531 54068 54068 -0.02787098542876265 YPVLVCHYW 9 Unmodified _YPVLVCHYW_ 0 0 0 REV__THSD7B|p.H112Y|1|0.35|ENSG00000144229|chr2:137056614-137056614|C/T|missense_variant REV__THSD7B|p.H112Y|1|0.35|ENSG00000144229|chr2:137056614-137056614|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.252685546875 2 590.28642 1178.55829 NaN NaN NaN NaN NaN NaN NaN 131.29 1 131.29 130.79 131.79 0 0 0 0 0.23508 1 25956 25956 9.3474 0.60203 1 + 55258 24801 36511 36532 54069 54069 -0.023850090492032905 YPVPIVLI 8 Unmodified _YPVPIVLI_ 0 0 0 ENSG00000176219|ENST00000315519|OR11H6 ENSG00000176219|ENST00000315519|OR11H6 ENSG00000176219|ENST00000315519|OR11H6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 305.0669250488281 3 305.196757 912.568441 NaN NaN NaN NaN NaN NaN NaN 22.989 1 21.2 20.7 21.7 -1.7886 0 0 0 0.21486 1 3677 3677 0 0 1 55259 6454 36512 36533 54070 54070 0.10865921947697643 YPVPPRRPP 9 Unmodified _YPVPPRRPP_ 0 0 0 ENST00000601502.1_1_19:8608994-8610536:-|nuORF ENST00000601502.1_1_19:8608994-8610536:-|nuORF ENST00000601502.1_1_19:8608994-8610536:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.21026611328125 3 360.210059 1077.60835 NaN NaN NaN NaN NaN NaN NaN 50.588 1 47.707 47.207 48.207 -2.8811 0 0 0 0.1964 1 9599 9599 0.073264 0.043981 1 55260 11706 36513 36534 54071 54071 0.07264861670978462 YPVPSWQLP 9 Unmodified _YPVPSWQLP_ 0 0 0 OR10A4|p.F108Lfs*68|1|0.22|ENSG00000170782|chr11:6876966-6876966|T/-|frameshift_variant OR10A4|p.F108Lfs*68|1|0.22|ENSG00000170782|chr11:6876966-6876966|T/-|frameshift_variant OR10A4|p.F108Lfs*68|1|0.22|ENSG00000170782|chr11:6876966-6876966|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7835083007812 2 543.784567 1085.55458 0.045824 2.4918E-05 -1.0743 -0.0005842 -1.0285 -0.00055928 543.7841388172891 106.4 1.737 102.02 101.15 102.89 -4.3764 159 49 5 0 0 0 0.34411 1 20339 20339 29.082 2.8134 1 35868000 55261 12723 36514 36535 54072 54072 0.01522644448596111 YPYRTQDSRQK 11 Unmodified _YPYRTQDSRQK_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B;nc|ENSG00000116117|Q8TEW8-5|PARD3B;ENST00000488622.1_1_2:206347421-206480534:+|nuORF nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2422790527344 3 481.244268 1440.71098 NaN NaN NaN NaN NaN NaN NaN 95.113 1 90.922 90.422 91.422 -4.1911 0 0 0 0.22632 1 18151 18151 0.172 0 1 55262 2907 36515 36536 54073 54073 0.008248578811389962 YQCCEHLTESV 11 Unmodified _YQCCEHLTESV_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant;FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.88232421875 3 437.849651 1310.52712 NaN NaN NaN NaN NaN NaN NaN 4.8908 1 3.8509 3.3509 4.3509 -1.04 0 0 0 0.23698 1 172 172 0 0 1 55263 7191 36516 36537 54074 54074 -0.11571994936275587 YQCLLYLQ 8 Unmodified _YQCLLYLQ_ 0 0 0 REV__ENSG00000162460|ENST00000375782|TMEM82 REV__ENSG00000162460|ENST00000375782|TMEM82 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2637329101562 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 97.963 1 94.044 93.544 94.544 -3.9194 0 0 0 0.22636 1 18803 18803 3.5871 0 1 + 55264 17499 36517 36538 54075 54075 -0.0038040417741740384 YQDVSTLIK 9 Unmodified _YQDVSTLIK_ 0 0 0 REV__ENSG00000136830|ENST00000373312|NIBAN2 REV__ENSG00000136830|ENST00000373312|NIBAN2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2833862304688 2 533.792589 1065.57063 0.7472 0.00039885 -0.58545 -0.00031251 0.16175 8.6344E-05 534.2936570966659 124.39 0.6656 119.62 119.21 119.88 -4.7681 36 18 3 0 0 0 0.71527 1 23884 23884 9.3831 3.1773 1 1772800 + 55265 16352 36518 36539 54076 54076 0.04046305894848956 YQEAMMNMAR 10 Unmodified _YQEAMMNMAR_ 0 0 0 nc|ENSG00000086475|P49903-2|SEPHS1;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1 nc|ENSG00000086475|P49903-2|SEPHS1 nc|ENSG00000086475|P49903-2|SEPHS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.76416015625 2 622.764668 1243.51478 NaN NaN NaN NaN NaN NaN NaN 76.203 1 72.788 72.288 73.288 -3.4151 0 0 0 2.8426 1 14874 14874 1.9275 0 1 55266 1694 36519 36540 54077 54077 -0.09723309880268971 YQEKLERI 8 Unmodified _YQEKLERI_ 0 0 0 REV__nc|ENSG00000129460|Q8NEJ9-2|NGDN REV__nc|ENSG00000129460|Q8NEJ9-2|NGDN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 360.2017517089844 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 90.854 1 86.759 86.259 87.259 -4.0946 0 0 0 0.21486 1 17309 17309 8.7454 0 1 + 55267 15963 36520 36541 54078 54078 0.0461712798901317 YQEKLERI 8 Unmodified _YQEKLERI_ 0 0 0 REV__nc|ENSG00000129460|Q8NEJ9-2|NGDN REV__nc|ENSG00000129460|Q8NEJ9-2|NGDN MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.20147705078125 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 90.743 1 86.966 86.466 87.466 -3.7779 0 0 0 0.21486 1 17367 17367 8.7454 0 1 + 55268 15963 36520 36541 54079 54079 0.0461712798901317 YQFDARSQYYK 11 Unmodified _YQFDARSQYYK_ 0 0 0 REV__ENST00000248901.10_1_22:37710662-37711253:+|nuORF REV__ENST00000248901.10_1_22:37710662-37711253:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.25946044921875 3 490.233369 1467.67828 0.15734 7.7133E-05 1.1874 0.00058209 1.3447 0.00065922 490.5683981667565 155.29 0.42313 150.04 149.69 150.11 -5.2527 15 11 2 0 0 0 0.66087 1 30093 30093 1.4551 0 1 1049200 + 55269 20105 36521 36542 54080 54080 -0.03685349241732183 YQGYSDSC 8 Unmodified _YQGYSDSC_ 0 0 0 BIVM|p.Y499Sfs*14|1|0.22|ENSG00000134897|chr13:102839848-102839849|-/CTTGTCTA|frameshift_variant BIVM|p.Y499Sfs*14|1|0.22|ENSG00000134897|chr13:102839848-102839849|-/CTTGTCTA|frameshift_variant BIVM|p.Y499Sfs*14|1|0.22|ENSG00000134897|chr13:102839848-102839849|-/CTTGTCTA|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 308.677490234375 3 308.113092 921.317447 -0.24421 -7.5244E-05 -0.2926 -9.0154E-05 -0.53681 -0.0001654 308.1136280221164 99.379 0.73332 99.379 99.024 99.757 0 48 20 4 0 0 0 0.89926 1 19438 19438 1.3295 0 1 2333500 55270 321 36522 36543 54081 54081 -0.14635869827066017 YQHRYRLYGQW 11 Unmodified _YQHRYRLYGQW_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2;THOC2|p.L784Ffs*4|1|0.3|ENSG00000125676|chrX:123631817-123631818|-/A|frameshift_variant ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3898315429688 2 785.389116 1568.76368 NaN NaN NaN NaN NaN NaN NaN 88.444 1 84.651 84.151 85.151 -3.7926 0 0 0 0.22632 1 17303 17303 0.026206 0.025642 1 55271 3376 36523 36544 54082 54082 0.0020486073458414467 YQKSIAQNN 9 Unmodified _YQKSIAQNN_ 0 0 0 TG|p.P2066S|1|0.15|ENSG00000042832|chr8:132972738-132972738|C/T|missense_variant TG|p.P2066S|1|0.15|ENSG00000042832|chr8:132972738-132972738|C/T|missense_variant TG|p.P2066S|1|0.15|ENSG00000042832|chr8:132972738-132972738|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2697143554688 2 533.269813 1064.52507 0.5306 0.00028295 0.069236 3.6922E-05 0.59983 0.00031987 533.2695966285997 35.409 0.4142 33.157 32.985 33.399 -2.2527 23 11 3 0 0 0 0.44932 1 6224 6224 22.736 0.98964 1 1294900 55272 25839 36524 36545 54083 54083 -0.004609195675357114 YQKSRNLQRD 10 Unmodified _YQKSRNLQRD_ 0 0 0 ENST00000519940.5_1_19:48735037-48741646:-|nuORF ENST00000519940.5_1_19:48735037-48741646:-|nuORF ENST00000519940.5_1_19:48735037-48741646:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2206115722656 3 436.565342 1306.6742 -0.045966 -2.0067E-05 -0.34153 -0.0001491 -0.38749 -0.00016917 436.56527466262423 39.535 0.66592 37.13 36.823 37.489 -2.4049 54 18 4 0 0 0 0.52989 1 7097 7097 1.9275 1.9142 1 7471100 55273 10829 36525 36546 54084 54084 0.03312606055214928 YQLFEYTR 8 Unmodified _YQLFEYTR_ 0 0 0 sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1;sp|F5HDK1|US27_HCMVMEnvelopeglycoproteinUS27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US27PE=3SV=1 sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.21392822265625 3 373.85383 1118.53966 -0.087963 -3.2885E-05 -0.99332 -0.00037136 -1.0813 -0.00040424 373.8535112613502 19.587 0.38659 18.191 17.992 18.379 -1.3966 31 10 4 0 0 0 0.73833 1 3251 3251 8.7454 2.115 1 11673000 55274 25729 36526 36547 54085 54085 -0.014868474194145165 YQLFEYTR 8 Unmodified _YQLFEYTR_ 0 0 0 sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1;sp|F5HDK1|US27_HCMVMEnvelopeglycoproteinUS27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US27PE=3SV=1 sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 373.85383 1118.53966 -0.22447 -8.392E-05 -1.3378 -0.00050013 -1.5622 -0.00058405 373.85338186905966 18.247 0.62947 18.247 18.09 18.719 0 0.045677 -0.0002605 NaN 8.7454 49 17 4 NaN NaN NaN NaN 0 NaN NaN 0 16657000 55275 25729 36526 36547 -0.014868474194145165 YQLFEYTR 8 Unmodified _YQLFEYTR_ 0 0 0 sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1;sp|F5HDK1|US27_HCMVMEnvelopeglycoproteinUS27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US27PE=3SV=1 sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 373.85383 1118.53966 -0.30526 -0.00011412 -0.99448 -0.00037179 -1.2997 -0.00048591 373.8535166029393 19.493 0.51961 18.167 17.968 18.487 -1.3251 -0.034377 0.00012453 NaN 8.7454 36 14 4 NaN NaN NaN NaN 0 NaN NaN 0 12165000 55276 25729 36526 36547 -0.014868474194145165 YQLHRYMFDEY 11 Unmodified _YQLHRYMFDEY_ 0 0 0 REV__ENST00000529712.5_1_11:47690447-47736202:-|nuORF REV__ENST00000529712.5_1_11:47690447-47736202:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2618408203125 3 522.234493 1563.68165 NaN NaN NaN NaN NaN NaN NaN 134.62 1 134.62 134.12 135.12 0 0 0 0 0.22632 1 26651 26651 0.2986 0 1 + 55277 17809 36527 36548 54086 54086 -0.07764422459331399 YQLHRYMFDEY 11 Unmodified _YQLHRYMFDEY_ 0 0 0 REV__ENST00000529712.5_1_11:47690447-47736202:-|nuORF REV__ENST00000529712.5_1_11:47690447-47736202:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2613525390625 3 522.234493 1563.68165 0.025102 1.3109E-05 -3.8608 -0.0020163 -3.8357 -0.0020032 522.232343830682 121.17 0.17805 116.62 116.57 116.74 -4.5476 5 4 2 0 0 0 0.96165 1 23883 23883 4.4062 1.5629 1 1825700 + 55278 17809 36527 36548 54087 54087 -0.07764422459331399 YQNFANLVP 9 Unmodified _YQNFANLVP_ 0 0 0 REV__TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant REV__TENM2|p.L1667Hfs*17|1|0.05|ENSG00000145934|chr5:168218890-168218891|-/ATCAGCGT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2722778320312 2 533.271824 1064.5291 NaN NaN NaN NaN NaN NaN NaN 49.539 1 46.54 46.04 47.04 -2.999 0 0 0 0.19674 1 9060 9060 0.40827 0.15679 1 + 55279 16863 36528 36549 54088 54088 -0.0005883007381726202 YQNRENWRRYL 11 Unmodified _YQNRENWRRYL_ 0 0 0 ENST00000519078.6_1_10:62538154-62544481:+|nuORF;ENST00000316629.8_1_10:62538265-62544481:+|nuORF ENST00000519078.6_1_10:62538154-62544481:+|nuORF ENST00000519078.6_1_10:62538154-62544481:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2713623046875 3 533.270929 1596.79096 NaN NaN NaN NaN NaN NaN NaN 101.71 1 97.691 97.191 98.191 -4.0212 0 0 0 0.22632 1 19545 19545 0.50596 0 1 55280 8682 36529 36550 54089 54089 0.016433442749757887 YQNRENWRRYL 11 Unmodified _YQNRENWRRYL_ 0 0 0 ENST00000519078.6_1_10:62538154-62544481:+|nuORF;ENST00000316629.8_1_10:62538265-62544481:+|nuORF ENST00000519078.6_1_10:62538154-62544481:+|nuORF ENST00000519078.6_1_10:62538154-62544481:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2704467773438 3 533.270929 1596.79096 NaN NaN NaN NaN NaN NaN NaN 110.17 1 105.99 105.49 106.49 -4.1826 0 0 0 0.22632 1 21201 21201 0.50596 0 1 55281 8682 36529 36550 54090 54090 0.016433442749757887 YQNRENWRRYL 11 Unmodified _YQNRENWRRYL_ 0 0 0 ENST00000519078.6_1_10:62538154-62544481:+|nuORF;ENST00000316629.8_1_10:62538265-62544481:+|nuORF ENST00000519078.6_1_10:62538154-62544481:+|nuORF ENST00000519078.6_1_10:62538154-62544481:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2709350585938 3 533.270929 1596.79096 NaN NaN NaN NaN NaN NaN NaN 110.41 1 106.18 105.68 106.68 -4.2289 0 0 0 0.22632 1 21252 21252 0.50596 0 1 55282 8682 36529 36550 54091 54091 0.016433442749757887 YQQEDQCRLY 10 Unmodified _YQQEDQCRLY_ 0 0 0 REV__nc|ENSG00000149781|Q86UX7|FERMT3 REV__nc|ENSG00000149781|Q86UX7|FERMT3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 449.2557067871094 3 449.19956 1344.57685 NaN NaN NaN NaN NaN NaN NaN 90.912 1 86.817 86.317 87.317 -4.0946 0 0 0 2.8426 1 17322 17322 1.0651 0.65688 1 + 55283 24095 36530 36551 54092 54092 -0.08165543935933783 YQQFYARRL 9 Unmodified _YQQFYARRL_ 0 0 0 REV__ENST00000531473.5_1_8:144695082-144696778:-|nuORF REV__ENST00000531473.5_1_8:144695082-144696778:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7659912109375 2 622.830372 1243.64619 NaN NaN NaN NaN NaN NaN NaN 10.14 1 9.074 8.574 9.574 -1.0664 0 0 0 0.23508 1 1079 1079 0.52476 0 1 + 55284 22771 36531 36552 54093 54093 0.034113278657969204 YQRFTKKFRQY 11 Unmodified _YQRFTKKFRQY_ 0 0 0 REV__ENST00000588475.1_1_18:13666687-13682076:-|nuORF REV__ENST00000588475.1_1_18:13666687-13682076:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2760620117188 3 522.284287 1563.83103 NaN NaN NaN NaN NaN NaN NaN 124.19 1 124.19 123.69 124.69 0 0 0 0 0.22632 1 24485 24485 0.172 0 1 + 55285 18542 36532 36553 54094 54094 0.07166890945541127 YQRMRYEYEFY 11 Unmodified _YQRMRYEYEFY_ 0 0 0 ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST ENST00000466695.1_1_6:149387353-149395249:+|nuORF ENST00000466695.1_1_6:149387353-149395249:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 550.0903930664062 3 549.913531 1646.71876 0.20847 0.00011464 0.82058 0.00045125 1.0291 0.00056589 550.2488436463965 159.84 0.14566 154.61 154.48 154.62 -5.2299 5 3 2 0 0 0 0.89122 1 31016 31016 0.026206 0 1 885840 55286 2661 36533 36554 54095 54095 -0.07872750913566051 YQRQVAGP 8 Unmodified _YQRQVAGP_ 0 0 0 ENST00000485822.1_1_9:116343181-116343334:+|nuORF ENST00000485822.1_1_9:116343181-116343334:+|nuORF ENST00000485822.1_1_9:116343181-116343334:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 459.74493408203125 2 459.743234 917.471915 NaN NaN NaN NaN NaN NaN NaN 43.139 1 40.533 40.033 41.033 -2.606 0 0 0 0.22684 1 7778 7778 0.68139 0.3018 1 55287 10444 36534 36555 54096 54096 0.0098774744047887 YQRRREKELYQ 11 Unmodified _YQRRREKELYQ_ 0 0 0 REV__PXYLP1|p.Q258R|1|0.12|ENSG00000155893|chr3:141292535-141292535|A/G|missense_variant REV__PXYLP1|p.Q258R|1|0.12|ENSG00000155893|chr3:141292535-141292535|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 523.6914672851562 3 523.614584 1567.82192 NaN NaN NaN NaN NaN NaN NaN 137.67 1 133.02 132.52 133.52 -4.6413 0 0 0 0.23698 1 27174 27174 1.3296 0.31607 1 + 55288 24536 36535 36556 54097 54097 0.06072497589229897 YQSKSNPPG 9 Unmodified _YQSKSNPPG_ 0 0 0 REV__ENST00000262376.10_1_16:4930962-4931145:+|nuORF REV__ENST00000262376.10_1_16:4930962-4931145:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.25360107421875 2 489.237981 976.461409 0.41617 0.00020361 1.6006 0.00078306 2.0167 0.00098667 489.2387650462884 42.692 0.56799 42.692 42.351 42.919 0 32 15 3 0 0 0 0.57447 1 7944 7944 14.838 0.93222 1 989780 + 55289 20196 36536 36557 54098 54098 -0.02776280004616183 YQSKSNPPG 9 Unmodified _YQSKSNPPG_ 0 0 0 REV__ENST00000262376.10_1_16:4930962-4931145:+|nuORF REV__ENST00000262376.10_1_16:4930962-4931145:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 489.237981 976.461409 0.41617 0.00020361 1.6006 0.00078306 2.0167 0.00098667 489.2387650462884 42.692 0.56799 42.692 42.351 42.919 0 0.053279 -0.00030224 NaN 14.838 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 989780 + 55290 20196 36536 36557 -0.02776280004616183 YQSKSNPPG 9 Unmodified _YQSKSNPPG_ 0 0 0 REV__ENST00000262376.10_1_16:4930962-4931145:+|nuORF REV__ENST00000262376.10_1_16:4930962-4931145:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 489.237981 976.461409 0.11804 5.775E-05 1.6497 0.00080712 1.7678 0.00086487 489.23868039841904 45.417 0.6734 42.577 42.152 42.825 -2.8409 -0.061717 -0.00025413 NaN 14.838 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1632200 + 55291 20196 36536 36557 -0.02776280004616183 YQSKSNPPG 9 Unmodified _YQSKSNPPG_ 0 0 0 REV__ENST00000262376.10_1_16:4930962-4931145:+|nuORF REV__ENST00000262376.10_1_16:4930962-4931145:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 489.237981 976.461409 0.10041 4.9124E-05 1.9683 0.00096296 2.0687 0.0010121 489.23891352113066 45.52 0.7034 42.655 42.162 42.866 -2.8653 0.016241 5.756E-05 NaN 14.838 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1747600 + 55292 20196 36536 36557 -0.02776280004616183 YQSKSNPPG 9 Unmodified _YQSKSNPPG_ 0 0 0 REV__ENST00000262376.10_1_16:4930962-4931145:+|nuORF REV__ENST00000262376.10_1_16:4930962-4931145:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 489.237981 976.461409 -0.35571 -0.00017402 2.4133 0.0011807 2.0576 0.0010066 489.2391605583222 45.497 0.67262 42.63 42.255 42.928 -2.8666 -0.0078025 0.00049297 NaN 14.838 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1500300 + 55293 20196 36536 36557 -0.02776280004616183 YQTDVLVKV 9 Unmodified _YQTDVLVKV_ 0 0 0 ENST00000427606.2_1_8:146202527-146219907:-|nuORF;ENST00000426361.6_2_8:146202527-146225127:-|nuORF ENST00000427606.2_1_8:146202527-146219907:-|nuORF ENST00000427606.2_1_8:146202527-146219907:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2830810546875 2 532.802957 1063.59136 0.45926 0.0002447 0.026892 1.4328E-05 0.48616 0.00025903 532.8027214114389 103.25 0.6455 103.25 102.9 103.54 0 28 18 2 0 0 0 0.30909 1 20293 20293 41.956 28.05 1 2301100 55294 9725 36537 36558 54099 54099 0.062108962745242025 YQTDVLVKV 9 Unmodified _YQTDVLVKV_ 0 0 0 ENST00000427606.2_1_8:146202527-146219907:-|nuORF;ENST00000426361.6_2_8:146202527-146225127:-|nuORF ENST00000427606.2_1_8:146202527-146219907:-|nuORF ENST00000427606.2_1_8:146202527-146219907:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.2864990234375 2 532.802957 1063.59136 -0.35372 -0.00018846 -0.15584 -8.3031E-05 -0.50956 -0.0002715 532.8030995388091 107.19 0.76806 102.87 102.44 103.21 -4.32 50 21 3 0 0 0 0.12612 1 21072 21072 47.594 13.193 1 2404500 55295 9725 36537 36558 54100 54100 0.062108962745242025 YQTDVLVKV 9 Unmodified _YQTDVLVKV_ 0 0 0 ENST00000427606.2_1_8:146202527-146219907:-|nuORF;ENST00000426361.6_2_8:146202527-146225127:-|nuORF ENST00000427606.2_1_8:146202527-146219907:-|nuORF ENST00000427606.2_1_8:146202527-146219907:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2709350585938 2 532.802957 1063.59136 0.35129 0.00018717 -1.6214 -0.00086388 -1.2701 -0.00067671 532.8028318424585 107.31 0.93358 102.89 102.4 103.34 -4.4121 61 26 4 0 0 0 0.081606 1 20615 20615 81.915 57.895 1 2315100 55296 9725 36537 36558 54101 54101 0.062108962745242025 YQTDVLVKV 9 Unmodified _YQTDVLVKV_ 0 0 0 ENST00000427606.2_1_8:146202527-146219907:-|nuORF;ENST00000426361.6_2_8:146202527-146225127:-|nuORF ENST00000427606.2_1_8:146202527-146219907:-|nuORF ENST00000427606.2_1_8:146202527-146219907:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2848510742188 2 532.802957 1063.59136 0.76082 0.00040537 -0.84339 -0.00044936 -0.08257 -4.3994E-05 532.8026436364971 107.12 0.85845 102.98 102.49 103.35 -4.135 44 24 3 0 0 0 0.16539 1 20549 20549 41.956 16.556 1 2851600 55297 9725 36537 36558 54102 54102 0.062108962745242025 YQTEDLFHFRS 11 Unmodified _YQTEDLFHFRS_ 0 0 0 tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1 tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1 tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.239990234375 3 481.561486 1441.66263 NaN NaN NaN NaN NaN NaN NaN 121.75 1 117.22 116.72 117.72 -4.5305 0 0 0 0.22632 1 23440 23440 0.026206 0 1 55298 26037 36538 36559 54103 54103 -0.040536357587598104 YQTKLLHY 8 Unmodified _YQTKLLHY_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;RYR3|p.N4580Mfs*8|1|0.37|ENSG00000198838|chr15:33853618-33853618|A/-|frameshift_variant nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2710571289062 2 533.290017 1064.56548 NaN NaN NaN NaN NaN NaN NaN 151.69 1 146.45 145.95 146.95 -5.2365 0 0 0 0.23749 1 29403 29403 0.62683 0 1 55299 7505 36539 36560 54104 54104 0.03578046822894976 YQWKCKRFRDQ 11 Unmodified _YQWKCKRFRDQ_ 0 0 0 ENSG00000166866|ENST00000300119|MYO1A ENSG00000166866|ENST00000300119|MYO1A ENSG00000166866|ENST00000300119|MYO1A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 519.650390625 3 519.929627 1556.76705 0.30499 0.00015857 -0.87274 -0.00045377 -0.56775 -0.00029519 520.2641595439628 140.92 0.10196 136.05 135.98 136.08 -4.8678 4 2 2 0 0 0 0.89074 1 27169 27169 1.4551 0 1 1248800 55300 5757 36540 36561 54105 54105 0.01093787516924749 YQYEPYLR 8 Unmodified _YQYEPYLR_ 0 0 0 nc|ENSG00000213996|Q9BZW4-2|TM6SF2;ENSG00000213996|ENST00000389363|TM6SF2 nc|ENSG00000213996|Q9BZW4-2|TM6SF2 nc|ENSG00000213996|Q9BZW4-2|TM6SF2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 377.8988342285156 3 377.85383 1130.53966 NaN NaN NaN NaN NaN NaN NaN 8.6167 1 7.8224 7.3224 8.3224 -0.79424 0 0 0 0.21486 1 913 913 0 0 1 55301 7714 36541 36562 54106 54106 -0.0203884741940783 YQYYFWSMQKW 11 Unmodified _YQYYFWSMQKW_ 0 0 0 REV__ENSG00000165389|ENST00000298130|SPTSSA REV__ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3632202148438 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 51.732 1 51.732 51.232 52.232 0 0 0 0 0.23698 1 9821 9821 0 0 1 + 55302 17764 36542 36563 54107 54107 -0.07698644074366712 YQYYFWSMQKW 11 Unmodified _YQYYFWSMQKW_ 0 0 0 REV__ENSG00000165389|ENST00000298130|SPTSSA REV__ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3632202148438 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 176.89 1 176.89 176.39 177.39 0 0 0 0 0.22632 1 36644 36644 0 0 1 + 55303 17764 36542 36563 54108 54108 -0.07698644074366712 YQYYFWSMQKW 11 Unmodified _YQYYFWSMQKW_ 0 0 0 REV__ENSG00000165389|ENST00000298130|SPTSSA REV__ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.3632202148438 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 176.9 1 176.9 176.4 177.4 0 0 0 0 0.23698 1 36645 36645 0 0 1 + 55304 17764 36542 36563 54109 54109 -0.07698644074366712 YQYYFWSMQKW 11 Unmodified _YQYYFWSMQKW_ 0 0 0 REV__ENSG00000165389|ENST00000298130|SPTSSA REV__ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3631591796875 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 145.1 1 140.43 139.93 140.93 -4.6694 0 0 0 0.22632 1 28756 28756 0 0 1 + 55305 17764 36542 36563 54110 54110 -0.07698644074366712 YQYYFWSMQKW 11 Unmodified _YQYYFWSMQKW_ 0 0 0 REV__ENSG00000165389|ENST00000298130|SPTSSA REV__ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 815.3631591796875 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 145.12 1 140.45 139.95 140.95 -4.6694 0 0 0 0.23698 1 28760 28760 0 0 1 + 55306 17764 36542 36563 54111 54111 -0.07698644074366712 YQYYFWSMQKW 11 Unmodified _YQYYFWSMQKW_ 0 0 0 REV__ENSG00000165389|ENST00000298130|SPTSSA REV__ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3627319335938 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 21.201 1 19.48 18.98 19.98 -1.7211 0 0 0 0.22632 1 3304 3304 0 0 1 + 55307 17764 36542 36563 54112 54112 -0.07698644074366712 YQYYFWSMQKW 11 Unmodified _YQYYFWSMQKW_ 0 0 0 REV__ENSG00000165389|ENST00000298130|SPTSSA REV__ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3629150390625 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 152.67 1 147.45 146.95 147.95 -5.2209 0 0 0 0.22632 1 29590 29590 0 0 1 + 55308 17764 36542 36563 54113 54113 -0.07698644074366712 YQYYFWSMQKW 11 Unmodified _YQYYFWSMQKW_ 0 0 0 REV__ENSG00000165389|ENST00000298130|SPTSSA REV__ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.3631591796875 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 164.15 1 159.09 158.59 159.59 -5.0648 0 0 0 0.22632 1 31993 31993 0 0 1 + 55309 17764 36542 36563 54114 54114 -0.07698644074366712 YQYYFWSMQKW 11 Unmodified _YQYYFWSMQKW_ 0 0 0 REV__ENSG00000165389|ENST00000298130|SPTSSA REV__ENSG00000165389|ENST00000298130|SPTSSA MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.354248046875 2 815.363387 1628.71222 NaN NaN NaN NaN NaN NaN NaN 165.19 1 160.24 159.74 160.74 -4.9484 0 0 0 0.22632 1 32262 32262 0 0 1 + 55310 17764 36542 36563 54115 54115 -0.07698644074366712 YRAGRNNRWYL 11 Unmodified _YRAGRNNRWYL_ 0 0 0 PLXNC1|p.L809*|1|0.11|ENSG00000136040|chr12:94247936-94247936|T/-|frameshift_variant;PLXNC1|p.D901Rfs*10|1|0.03|ENSG00000136040|chr12:94248333-94248334|-/G|frameshift_variant;PLXNC1|p.I1400Sfs*21|1|0.37|ENSG00000136040|chr12:94298749-94298749|A/-|frameshift_variant;ENSG00000136040|ENST00000258526|PLXNC1;PLXNC1|p.C506Vfs*3|1|0.22|ENSG00000136040|chr12:94209658-94209659|-/A|frameshift_variant PLXNC1|p.L809*|1|0.11|ENSG00000136040|chr12:94247936-94247936|T/-|frameshift_variant PLXNC1|p.L809*|1|0.11|ENSG00000136040|chr12:94247936-94247936|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25836181640625 3 490.256731 1467.74836 NaN NaN NaN NaN NaN NaN NaN 127.27 1 122.65 122.15 123.15 -4.6172 0 0 0 0.22632 1 25096 25096 0.172 0 1 55311 3979 36543 36564 54116 54116 0.03319993937407162 YRALKMDF 8 Unmodified _YRALKMDF_ 0 0 0 ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7 ENSG00000091127|ENST00000469408|PUS7 ENSG00000091127|ENST00000469408|PUS7 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2764282226562 2 522.27077 1042.52699 NaN NaN NaN NaN NaN NaN NaN 146.29 1 141.29 140.79 141.79 -5 0 0 0 0.23107 1 28307 28307 0.25148 0.18749 1 55312 1802 36544 36565 54117 54117 0.007424179167173861 YRAQKRLF 8 Unmodified _YRAQKRLF_ 0 0 0 REV__ENSG00000141837|ENST00000360228|CACNA1A REV__ENSG00000141837|ENST00000360228|CACNA1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2781982421875 2 541.3169 1080.61925 NaN NaN NaN NaN NaN NaN NaN 158.67 1 153.4 152.9 153.9 -5.2748 0 0 0 0.21486 1 30795 30795 5.2307 0.33366 1 + 55313 13232 36545 36566 54118 54118 0.08216264045267963 YRATVLGTNR 10 Unmodified _YRATVLGTNR_ 0 0 0 tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1 tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1 tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3217163085938 2 575.820004 1149.62546 -0.50864 -0.00029289 1.0249 0.00059016 0.51626 0.00029727 575.8207498312038 14.925 0.34639 13.746 13.625 13.972 -1.1789 13 9 3 0 0 0 0.75133 1 2060 2060 5.2969 0 1 1119400 55314 26260 36546 36567 54119 54119 0.05662737486136393 YRCFAYQDKQE 11 Unmodified _YRCFAYQDKQE_ 0 0 0 REV__TRDN|p.P386Tfs*34|1|0.13|ENSG00000186439|chr6:123382127-123382128|-/T|frameshift_variant REV__TRDN|p.P386Tfs*34|1|0.13|ENSG00000186439|chr6:123382127-123382128|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 484.22064208984375 3 484.218843 1449.6347 NaN NaN NaN NaN NaN NaN NaN 136.91 1 131.99 131.49 132.49 -4.9216 0 0 0 0.22632 1 26318 26318 8.4443 8.4383 1 + 55315 19031 36547 36568 54120 54120 -0.0721328201052529 YRCRMEQLIQN 11 Unmodified _YRCRMEQLIQN_ 0 0 0 REV__CON__A2VCT4 REV__CON__A2VCT4 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 484.7593688964844 3 485.239472 1452.69659 NaN NaN NaN NaN NaN NaN NaN 149.12 1 144.41 143.91 144.91 -4.7095 0 0 0 0.22632 1 29617 29617 0.03141 0.018144 1 + + 55316 13502 36548 36569 54121 54121 -0.011652538629959963 YRDRFFMHKRL 11 Unmodified _YRDRFFMHKRL_ 0 0 0 REV__ENSG00000274808|ENST00000611257|TBC1D3B REV__ENSG00000274808|ENST00000611257|TBC1D3B MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6826782226562 3 523.61375 1567.81942 NaN NaN NaN NaN NaN NaN NaN 157.08 1 151.8 151.3 152.3 -5.2854 0 0 0 0.23698 1 30479 30479 1.2148 0.10508 1 + 55317 19879 36549 36570 54122 54122 0.058223706505486916 YRDSIFRWLWQ 11 Unmodified _YRDSIFRWLWQ_ 0 0 0 SYNE4|p.R193W|1|0.24|ENSG00000181392|chr19:36006791-36006791|G/A|missense_variant SYNE4|p.R193W|1|0.24|ENSG00000181392|chr19:36006791-36006791|G/A|missense_variant SYNE4|p.R193W|1|0.24|ENSG00000181392|chr19:36006791-36006791|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3977661132812 2 785.401692 1568.78883 NaN NaN NaN NaN NaN NaN NaN 17.968 1 16.453 15.953 16.953 -1.5148 0 0 0 0.22632 1 2640 2640 0.026206 0 1 55318 25810 36550 36571 54123 54123 0.027189155371615925 YREKFSDDDEM 11 Unmodified _YREKFSDDDEM_ 0 0 0 ZNF200|p.S181F|1|0.32|ENSG00000010539|chr16:3224538-3224538|G/A|missense_variant ZNF200|p.S181F|1|0.32|ENSG00000010539|chr16:3224538-3224538|G/A|missense_variant ZNF200|p.S181F|1|0.32|ENSG00000010539|chr16:3224538-3224538|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.72161865234375 3 478.866246 1433.57691 NaN NaN NaN NaN NaN NaN NaN 13.44 1 12.431 11.931 12.931 -1.0098 0 0 0 0.23698 1 1949 1949 0.094841 0 1 55319 26606 36551 36572 54124 54124 -0.12253588726593989 YREKFSDDDEM 11 Unmodified _YREKFSDDDEM_ 0 0 0 ZNF200|p.S181F|1|0.32|ENSG00000010539|chr16:3224538-3224538|G/A|missense_variant ZNF200|p.S181F|1|0.32|ENSG00000010539|chr16:3224538-3224538|G/A|missense_variant ZNF200|p.S181F|1|0.32|ENSG00000010539|chr16:3224538-3224538|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.72088623046875 3 478.866246 1433.57691 NaN NaN NaN NaN NaN NaN NaN 13.768 1 12.595 12.095 13.095 -1.173 0 0 0 0.23698 1 1815 1815 0.094841 0 1 55320 26606 36551 36572 54125 54125 -0.12253588726593989 YREKSSDDDE 10 Unmodified _YREKSSDDDE_ 0 0 0 ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant;ENST00000575285.1_1_16:3273894-3274698:-|nuORF;nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200 ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.775634765625 2 622.257296 1242.50004 0.73538 0.0004576 -0.13138 -8.1752E-05 0.604 0.00037585 622.2574389806318 46.34 0.48477 46.34 46.107 46.592 0 24 13 3 0 0 0 0.49999 1 8743 8743 0.26539 0 1 1768400 55321 1065 36552 36573 54126 54126 -0.11151063951410833 YREKSSDDDE 10 Unmodified _YREKSSDDDE_ 0 0 0 ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant;ENST00000575285.1_1_16:3273894-3274698:-|nuORF;nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200 ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7596435546875 2 622.257296 1242.50004 0.85429 0.00053159 -0.023427 -1.4578E-05 0.83087 0.00051701 622.2572373260593 49.551 0.56098 46.67 46.415 46.976 -2.8811 26 15 2 0 0 0 0.53552 2 9374 9374;9418 22.736 2.3217 1 1948800 55322 1065 36552 36573 54127;54128 54127 -0.11151063951410833 YREKSSDDDE 10 Unmodified _YREKSSDDDE_ 0 0 0 ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant;ENST00000575285.1_1_16:3273894-3274698:-|nuORF;nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200 ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 622.257296 1242.50004 0.73538 0.0004576 -0.13138 -8.1752E-05 0.604 0.00037585 622.2574389806318 46.34 0.48477 46.34 46.107 46.592 0 -0.25995 -0.00044745 NaN 22.736 24 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1768400 55323 1065 36552 36573 -0.11151063951410833 YREKSSDDDE 10 Unmodified _YREKSSDDDE_ 0 0 0 ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant;ENST00000575285.1_1_16:3273894-3274698:-|nuORF;nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200 ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 622.257296 1242.50004 0.85429 0.00053159 -0.023427 -1.4578E-05 0.83087 0.00051701 622.2572373260593 49.551 0.56098 46.67 46.415 46.976 -2.8811 0.069657 -0.0003131 NaN 22.736 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1948800 55324 1065 36552 36573 -0.11151063951410833 YREKSSDDDE 10 Unmodified _YREKSSDDDE_ 0 0 0 ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant;ENST00000575285.1_1_16:3273894-3274698:-|nuORF;nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200 ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant ZNF200|p.R213Gfs*3|1|0.09|ENSG00000010539|chr16:3224443-3224443|T/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 622.257296 1242.50004 0.12247 7.6207E-05 0.49854 0.00031022 0.62101 0.00038643 622.257743007621 49.71 0.52535 46.703 46.416 46.941 -3.0068 0.10269 0.0003365 NaN 22.736 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1599800 55325 1065 36552 36573 -0.11151063951410833 YREKWERRRNE 11 Unmodified _YREKWERRRNE_ 0 0 0 REV__ENST00000505524.1_1_5:36108630-36114563:-|nuORF REV__ENST00000505524.1_1_5:36108630-36114563:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2665405273438 3 541.281716 1620.82332 0.20223 0.00010946 -1.8921 -0.0010242 -1.6899 -0.00091469 541.6151822045866 130.57 0.21376 125.94 125.76 125.97 -4.6359 6 5 2 0 0 0 0.82392 1 25717 25717 0.45452 0.046251 1 954260 + 55326 17660 36553 36574 54129 54129 0.037741316779829504 YREKWERRRNE 11 Unmodified _YREKWERRRNE_ 0 0 0 REV__ENST00000505524.1_1_5:36108630-36114563:-|nuORF REV__ENST00000505524.1_1_5:36108630-36114563:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2742919921875 3 541.281716 1620.82332 NaN NaN NaN NaN NaN NaN NaN 73.606 1 70.012 69.512 70.512 -3.594 0 0 0 0.22632 1 13971 13971 0.0072825 0 1 + 55327 17660 36553 36574 54130 54130 0.037741316779829504 YRELDKTAK 9 Unmodified _YRELDKTAK_ 0 0 0 REV__nc|ENSG00000064933|P54277-3|PMS1 REV__nc|ENSG00000064933|P54277-3|PMS1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2084045410156 3 375.208384 1122.60332 NaN NaN NaN NaN NaN NaN NaN 15.933 1 14.717 14.217 15.217 -1.2159 0 0 0 0.19636 1 2484 2484 2.6312 0.13275 1 + 55328 14177 36554 36575 54131 54131 0.04692513017721467 YRELDKTAK 9 Unmodified _YRELDKTAK_ 0 0 0 REV__nc|ENSG00000064933|P54277-3|PMS1 REV__nc|ENSG00000064933|P54277-3|PMS1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2084045410156 3 375.208384 1122.60332 NaN NaN NaN NaN NaN NaN NaN 15.986 1 14.632 14.132 15.132 -1.3534 0 0 0 0.19636 1 2242 2242 2.4985 0 1 + 55329 14177 36554 36575 54132 54132 0.04692513017721467 YRENKVVE 8 Unmodified _YRENKVVE_ 0 0 0 REV__nc|ENSG00000198055|P43250-2|GRK6 REV__nc|ENSG00000198055|P43250-2|GRK6 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 346.15704345703125 3 346.185579 1035.53491 NaN NaN NaN NaN NaN NaN NaN 123.57 1 119 118.5 119.5 -4.5757 0 0 0 0.21486 1 24360 24360 1.4819 0 1 + 55330 24233 36555 36576 54133 54133 0.018562684378593985 YRETSNPPD 9 Unmodified _YRETSNPPD_ 0 0 0 REV__ENST00000571954.5_1_17:80918331-81006625:-|nuORF REV__ENST00000571954.5_1_17:80918331-81006625:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 360.2054748535156 3 360.164844 1077.4727 0.11555 4.1617E-05 1.5034 0.00054147 1.6189 0.00058309 360.16561705813575 47.448 0.21556 47.448 47.362 47.577 0 7 5 2 0 0 0 0.43219 1 8939 8939 23.79 2.2528 1 338130 + 55331 18485 36556 36577 54134 54134 -0.06293502701146281 YREWRRYYEVW 11 Unmodified _YREWRRYYEVW_ 0 0 0 ENSG00000118017|ENST00000236709|A4GNT ENSG00000118017|ENST00000236709|A4GNT ENSG00000118017|ENST00000236709|A4GNT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 569.2573852539062 3 569.279313 1704.81611 0.18663 0.00010625 3.2272 0.0018372 3.4138 0.0019434 569.2814235670263 172.26 0.24353 167.37 167.22 167.47 -4.8977 9 6 2 0 0 0 0.96228 1 34179 34179 0 0 1 6303100 55332 3012 36557 36578 54135 54135 -0.008106009224320587 YRFKEYLWRFL 11 Unmodified _YRFKEYLWRFL_ 0 0 0 REV__ENSG00000167904|ENST00000434581|TMEM68 REV__ENSG00000167904|ENST00000434581|TMEM68 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2737426757812 3 540.961033 1619.86127 0.29966 0.0001621 1.6017 0.00086647 1.9014 0.0010286 540.9612272203748 147.38 0.17664 147.38 147.22 147.4 0 5 4 2 0 0 0 0.96212 1 29462 29462 0.40827 0.40827 1 1511400 + 55333 17979 36558 36579 54136 54136 0.0761324961072205 YRFYHRLKEEK 11 Unmodified _YRFYHRLKEEK_ 0 0 0 REV__ENSG00000167434|ENST00000300900|CA4 REV__ENSG00000167434|ENST00000300900|CA4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6931762695312 3 523.615925 1567.82595 NaN NaN NaN NaN NaN NaN NaN 151.38 1 146.14 145.64 146.64 -5.2365 0 0 0 0.22632 1 29342 29342 0.026206 0 1 + 55334 17926 36559 36580 54137 54137 0.06474587082925609 YRFYNITYTA 10 Unmodified _YRFYNITYTA_ 0 0 0 REV__tr|U7T201|U7T201_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00705PE=4SV=1 REV__tr|U7T201|U7T201_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00705PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.8827209472656 3 437.883789 1310.62954 NaN NaN NaN NaN NaN NaN NaN 8.7063 1 7.9121 7.4121 8.4121 -0.79424 0 0 0 0.22588 1 934 934 0.13989 0 1 + 55335 25299 36560 36581 54138 54138 -0.013352178108107182 YRGEGGYHHS 10 Unmodified _YRGEGGYHHS_ 0 0 0 REV__RBMXL3|p.G692Afs*282|1|0.46|ENSG00000175718|chrX:115191512-115191512|G/-|frameshift_variant REV__RBMXL3|p.G692Afs*282|1|0.46|ENSG00000175718|chrX:115191512-115191512|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 387.71240234375 3 388.172333 1161.49517 -0.41637 -0.00016162 -0.22176 -8.608E-05 -0.63813 -0.0002477 388.1723701016611 52.884 0.76398 50.001 49.689 50.453 -2.8837 54 21 4 0 0 0 0.91149 1 10044 10044 5.4027 3.6604 1 5605900 + 55336 24553 36561 36582 54139 54139 -0.07911858512852632 YRGPSHTY 8 Unmodified _YRGPSHTY_ 0 0 0 FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;ENSG00000075420|ENST00000415807|FNDC3B FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2558288574219 2 490.732866 979.451179 0.24184 0.00011868 0.26427 0.00012968 0.50611 0.00024836 490.73304041984204 19.521 0.42503 18.124 17.919 18.344 -1.3966 31 11 4 0 0 0 0.83888 1 3223 3223 24.021 5.8856 1 3399500 55337 1517 36562 36583 54140 54140 -0.039368429391970494 YRGPSHTY 8 Unmodified _YRGPSHTY_ 0 0 0 FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;ENSG00000075420|ENST00000415807|FNDC3B FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2550964355469 2 490.732866 979.451179 -0.23686 -0.00011624 0.79813 0.00039167 0.56127 0.00027543 490.7333249845054 19.379 0.45232 18.054 17.827 18.279 -1.3251 34 12 4 0 0 0 0.64118 1 2959 2959 30.637 30.637 1 3259400 55338 1517 36562 36583 54141 54141 -0.039368429391970494 YRGRRVTT 8 Unmodified _YRGRRVTT_ 0 0 0 ENSG00000129965|ENST00000397270|INS-IGF2 ENSG00000129965|ENST00000397270|INS-IGF2 ENSG00000129965|ENST00000397270|INS-IGF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 337.19525146484375 3 336.86143 1007.56246 0.25575 8.6152E-05 -1.3836 -0.0004661 -1.1279 -0.00037995 336.8605416901601 32.606 0.21613 30.459 30.306 30.522 -2.1468 7 5 2 0 0 0 8448 1 5674 5674 10.074 0 1 185340 55339 3575 36563 36584 54142 54142 0.05898216488731123 YRGRRVTT 8 Unmodified _YRGRRVTT_ 0 0 0 ENSG00000129965|ENST00000397270|INS-IGF2 ENSG00000129965|ENST00000397270|INS-IGF2 ENSG00000129965|ENST00000397270|INS-IGF2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 336.86143 1007.56246 -0.17716 -5.9677E-05 -1.5782 -0.00053163 -1.7554 -0.00059131 336.8608334315339 32.826 0.24587 30.595 30.434 30.68 -2.2305 0.067924 -1.8174E-05 NaN 10.074 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 428500 55340 3575 36563 36584 0.05898216488731123 YRGTIMDT 8 Unmodified _YRGTIMDT_ 0 0 0 ENSG00000109016|ENST00000395511|DHRS7B ENSG00000109016|ENST00000395511|DHRS7B ENSG00000109016|ENST00000395511|DHRS7B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72918701171875 2 478.728935 955.443317 0.66963 0.00032057 0.9221 0.00044143 1.5917 0.00076201 478.72929211367074 108.66 0.55322 104.48 104.11 104.66 -4.1826 21 15 2 0 0 0 0.69031 1 20898 20898 15.847 0 1 832460 55341 2509 36564 36585 54143 54143 -0.03618738250975184 YRGTIMDT 8 Unmodified _YRGTIMDT_ 0 0 0 ENSG00000109016|ENST00000395511|DHRS7B ENSG00000109016|ENST00000395511|DHRS7B ENSG00000109016|ENST00000395511|DHRS7B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 478.728935 955.443317 -0.14421 -6.9036E-05 1.7408 0.00083336 1.5966 0.00076432 478.7296160255107 108.83 0.55708 104.38 104.08 104.64 -4.4518 -0.049481 0.00023982 NaN 15.847 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1217200 55342 2509 36564 36585 -0.03618738250975184 YRHIYIRHFQH 11 Unmodified _YRHIYIRHFQH_ 0 0 0 REV__ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant REV__ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.41064453125 2 785.412926 1568.8113 NaN NaN NaN NaN NaN NaN NaN 172.78 1 167.88 167.38 168.38 -4.8977 0 0 0 0.23698 1 34279 34279 2.7352 0.23671 1 + 55343 12958 36565 36586 54144 54144 0.049645597254311724 YRHIYIRHFQH 11 Unmodified _YRHIYIRHFQH_ 0 0 0 REV__ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant REV__ADCY8|p.T500Sfs*10|1|0.44|ENSG00000155897|chr8:130909849-130909850|-/TCCTTGAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.396484375 2 785.412926 1568.8113 NaN NaN NaN NaN NaN NaN NaN 174.76 1 169.86 169.36 170.36 -4.8916 0 0 0 0.22632 1 34800 34800 0.026206 0 1 + 55344 12958 36565 36586 54145 54145 0.049645597254311724 YRILIKSQC 9 Unmodified _YRILIKSQC_ 0 0 0 REV__PPIL4|p.K384Nfs*112|1|0.27|ENSG00000131013|chr6:149512230-149512230|T/-|frameshift_variant REV__PPIL4|p.K384Nfs*112|1|0.27|ENSG00000131013|chr6:149512230-149512230|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.2160949707031 3 375.214593 1122.62195 NaN NaN NaN NaN NaN NaN NaN 134.09 1 129.28 128.78 129.78 -4.8175 0 0 0 0.23375 1 25816 25816 13.615 0.74226 1 + 55345 24499 36566 36587 54146 54146 0.06554351387921997 YRIRFGLLI 9 Unmodified _YRIRFGLLI_ 0 0 0 REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3296508789062 2 575.858401 1149.70225 NaN NaN NaN NaN NaN NaN NaN 52.354 1 49.267 48.767 49.767 -3.0876 0 0 0 0.23508 1 9628 9628 1.8442 0 1 + 55346 14238 36567 36588 54147 54147 0.13338580773279318 YRKDIKRWRLI 11 Unmodified _YRKDIKRWRLI_ 0 0 0 tr|U7SL52|U7SL52_FUSNUVWFAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01984PE=4SV=1 tr|U7SL52|U7SL52_FUSNUVWFAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01984PE=4SV=1 tr|U7SL52|U7SL52_FUSNUVWFAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01984PE=4SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 387.7225036621094 4 387.488677 1545.9256 0.27651 0.00010715 0.48851 0.00018929 0.76503 0.00029644 387.7397386715091 31.724 0.35232 29.698 29.517 29.869 -2.0264 14 9 2 0 0 0 0.89134 1 5450 5450 0.094841 0 1 707580 55347 25976 36568 36589 54148 54148 0.17447449487553968 YRKGSVSV 8 Unmodified _YRKGSVSV_ 0 0 0 ENST00000444292.2_1_X:95228575-95229244:-|nuORF ENST00000444292.2_1_X:95228575-95229244:-|nuORF ENST00000444292.2_1_X:95228575-95229244:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 448.35052490234375 2 448.253434 894.492316 NaN NaN NaN NaN NaN NaN NaN 130.29 1 125.66 125.16 126.16 -4.6359 0 0 0 0.21486 1 25679 25679 2.3027 0 1 55348 9924 36569 36590 54149 54149 0.04084918100295454 YRKKLEEVS 9 Unmodified _YRKKLEEVS_ 0 0 0 REV__nc|ENSG00000005175|Q9H6T3-2|RPAP3 REV__nc|ENSG00000005175|Q9H6T3-2|RPAP3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3182983398438 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 160.13 1 160.13 159.63 160.63 0 0 0 0 0.19632 1 32153 32153 0.073264 0 1 + 55349 23924 36570 36591 54150 54150 0.06533086051786086 YRKKLEEVS 9 Unmodified _YRKKLEEVS_ 0 0 0 REV__nc|ENSG00000005175|Q9H6T3-2|RPAP3 REV__nc|ENSG00000005175|Q9H6T3-2|RPAP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3204956054688 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 117.68 1 113.17 112.67 113.67 -4.502 0 0 0 0.19632 1 23196 23196 0.073264 0 1 + 55350 23924 36570 36591 54151 54151 0.06533086051786086 YRKKSKRE 8 Unmodified _YRKKSKRE_ 0 0 0 REV__ZC3H13|p.A1112Vfs*54|1|0.23|ENSG00000123200|chr13:45969209-45969209|G/-|frameshift_variant;REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.77587890625 2 547.825089 1093.63563 NaN NaN NaN NaN NaN NaN NaN 25.102 1 23.567 23.067 24.067 -1.5342 0 0 0 0.21486 1 4112 4112 7.2892 1.0834 1 + 55351 25555;15722 36571 36592 54152 54152 0.0925534521136342 YRKLILKL 8 Unmodified _YRKLILKL_ 0 0 0 REV__ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant REV__ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6904296875 2 523.85787 1045.70119 NaN NaN NaN NaN NaN NaN NaN 124.77 1 120 119.5 120.5 -4.7681 0 0 0 0.2396 1 23959 23959 0.12286 0 1 + 55352 18579 36572 36593 54153 54153 0.18016366404367545 YRKNRWRRSL 10 Unmodified _YRKNRWRRSL_ 0 0 0 REV__MMP24|p.R151W|1|0.63|ENSG00000125966|chr20:35251960-35251960|C/T|missense_variant REV__MMP24|p.R151W|1|0.63|ENSG00000125966|chr20:35251960-35251960|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 718.0128173828125 2 717.913093 1433.81163 NaN NaN NaN NaN NaN NaN NaN 174.82 1 170.03 169.53 170.53 -4.7898 0 0 0 0.22588 1 35726 35726 5.7319 2.7366 1 + 55353 23866 36573 36594 54154 54154 0.11207979445293859 YRKQLGHHI 9 Unmodified _YRKQLGHHI_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3251342773438 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 174.7 1 174.7 174.2 175.2 0 0 0 0 0.19652 1 36173 36173 0.073264 0 1 55354 6829 36574 36595 54155 54155 0.06666764931242142 YRKQLGHHI 9 Unmodified _YRKQLGHHI_ 0 0 0 nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant nc|ENSG00000183091|P20929-3|NEB nc|ENSG00000183091|P20929-3|NEB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3272705078125 2 576.325257 1150.63596 NaN NaN NaN NaN NaN NaN NaN 174.9 1 170.01 169.51 170.51 -4.8845 0 0 0 0.23508 1 34758 34758 7.9102 1.7044 1 55355 6829 36574 36595 54156 54156 0.06666764931242142 YRKQMAVKK 9 Unmodified _YRKQMAVKK_ 0 0 0 ENSG00000141433|ENST00000450565|ADCYAP1 ENSG00000141433|ENST00000450565|ADCYAP1 ENSG00000141433|ENST00000450565|ADCYAP1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3236083984375 2 576.339518 1150.66448 NaN NaN NaN NaN NaN NaN NaN 115.48 1 111.17 110.67 111.67 -4.3136 0 0 0 0.1963 1 22234 22234 0.029283 0 1 55356 4363 36575 36596 54157 54157 0.09517746516144143 YRLERGVG 8 Unmodified _YRLERGVG_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1;LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant;LRP1|p.D1366Rfs*54|1|0.17|ENSG00000123384|chr12:57177143-57177144|-/CA|frameshift_variant;LRP1|p.N939Tfs*41|2|0.2|ENSG00000123384|chr12:57166940-57166940|C/-|frameshift_variant;LRP1|p.D1283Ifs*50|1|0.09|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 317.1852111816406 3 317.178648 948.514114 NaN NaN NaN NaN NaN NaN NaN 107.38 1 107.38 106.88 107.88 0 0 0 0 0.21486 1 21115 21115 0.45834 0 1 55357 3265 36576 36597 54158 54158 0.03779722848867095 YRLKEEFQKLD 11 Unmodified _YRLKEEFQKLD_ 0 0 0 REV__tr|U7SFS9|U7SFS9_FUSNUAdenylosuccinatesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purAPE=3SV=1 REV__tr|U7SFS9|U7SFS9_FUSNUAdenylosuccinatesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26544189453125 3 490.264669 1467.77218 NaN NaN NaN NaN NaN NaN NaN 19.197 1 17.562 17.062 18.062 -1.6351 0 0 0 0.22632 1 2882 2882 1.4551 0.8698 1 + 55358 24858 36577 36598 54159 54159 0.05700369860551291 YRLLVRLRR 9 Unmodified _YRLLVRLRR_ 0 0 0 REV__ENSG00000198890|ENST00000370078|PRMT6 REV__ENSG00000198890|ENST00000370078|PRMT6 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7645874023438 2 622.906748 1243.79894 0.33053 0.00020589 -0.07745 -4.8244E-05 0.25308 0.00015765 623.4080039433828 143.04 0.25021 138.02 137.86 138.11 -5.0261 6 5 2 0 0 0 0.88278 1 27556 27556 0.52476 0 1 1458800 + 55359 19476 36578 36599 54160 54160 0.18679568053062212 YRLTQNHY 8 Unmodified _YRLTQNHY_ 0 0 0 REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.771484375 2 547.772522 1093.53049 NaN NaN NaN NaN NaN NaN NaN 65.509 1 65.509 65.009 66.009 0 0 0 0 0.21452 1 12633 12633 13.508 2.684 1 + 55360 19302 36579 36600 54161 54161 -0.012531959850548446 YRMWFERLRAH 11 Unmodified _YRMWFERLRAH_ 0 0 0 REV__nc|ENSG00000078618|O43847-2|NRDC REV__nc|ENSG00000078618|O43847-2|NRDC MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2760009765625 3 522.269983 1563.78812 NaN NaN NaN NaN NaN NaN NaN 23.794 1 22.005 21.505 22.505 -1.7886 0 0 0 0.22632 1 3845 3845 0.094841 0 1 + 55361 14384 36580 36601 54162 54162 0.028777976164747088 YRNLTLGSRA 10 Unmodified _YRNLTLGSRA_ 0 0 0 REV__ENSG00000112837|ENST00000369663|TBX18 REV__ENSG00000112837|ENST00000369663|TBX18 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3212280273438 2 575.820004 1149.62546 -0.65763 -0.00037868 1.1315 0.00065155 0.47389 0.00027287 575.8207720995426 14.891 0.24549 13.777 13.641 13.887 -1.1142 14 6 3 0 0 0 0.75868 1 2256 2256 2.9952 0 1 1148400 + 55362 15316 36581 36602 54163 54163 0.056627374861591306 YRPRRHRLWMV 11 Unmodified _YRPRRHRLWMV_ 0 0 0 REV__ENST00000502346.1_1_5:82360835-82373254:-|nuORF REV__ENST00000502346.1_1_5:82360835-82373254:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.399658203125 2 785.438421 1568.86229 NaN NaN NaN NaN NaN NaN NaN 126.83 1 122.21 121.71 122.71 -4.6172 0 0 0 0.22632 1 25010 25010 0.026206 0 1 + 55363 22435 36582 36603 54164 54164 0.10061185498648229 YRQDWYKDNY 10 Unmodified _YRQDWYKDNY_ 0 0 0 REV__nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 REV__nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 484.275146484375 3 484.217719 1449.63133 NaN NaN NaN NaN NaN NaN NaN 85.802 1 82.073 81.573 82.573 -3.7289 0 0 0 2.8426 1 16397 16397 0.043787 0.017581 1 + 55364 16021 36583 36604 54165 54165 -0.07550208792872581 YRQRFLYSLYR 11 Unmodified _YRQRFLYSLYR_ 0 0 0 ENST00000547496.5_1_12:89853476-89885774:-|nuORF;ENST00000539190.6_1_12:89855074-89919672:-|nuORF;nc|ENSG00000139323|Q8TC44-2|POC1B;ENSG00000139323|ENST00000313546|POC1B ENST00000547496.5_1_12:89853476-89885774:-|nuORF ENST00000547496.5_1_12:89853476-89885774:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2672729492188 3 522.284287 1563.83103 NaN NaN NaN NaN NaN NaN NaN 92.262 1 88.337 87.837 88.837 -3.9251 0 0 0 0.22632 1 18066 18066 0.50596 0.47975 1 55365 4238 36584 36605 54166 54166 0.07166890945563864 YRQRFLYSLYR 11 Unmodified _YRQRFLYSLYR_ 0 0 0 ENST00000547496.5_1_12:89853476-89885774:-|nuORF;ENST00000539190.6_1_12:89855074-89919672:-|nuORF;nc|ENSG00000139323|Q8TC44-2|POC1B;ENSG00000139323|ENST00000313546|POC1B ENST00000547496.5_1_12:89853476-89885774:-|nuORF ENST00000547496.5_1_12:89853476-89885774:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2677612304688 3 522.284287 1563.83103 NaN NaN NaN NaN NaN NaN NaN 130.4 1 125.76 125.26 126.26 -4.6359 0 0 0 0.22632 1 25698 25698 0.094841 0 1 55366 4238 36584 36605 54167 54167 0.07166890945563864 YRQWQHQYRQW 11 Unmodified _YRQWQHQYRQW_ 0 0 0 REV__ENST00000577066.2_1_17:79004653-79005004:-|nuORF REV__ENST00000577066.2_1_17:79004653-79005004:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4635009765625 2 839.902922 1677.79129 NaN NaN NaN NaN NaN NaN NaN 177.03 1 177.03 176.53 177.53 0 0 0 0 0.22632 1 36672 36672 0 0 1 + 55367 23212 36585 36606 54168 54168 -0.020492360051775904 YRQWQHQYRQW 11 Unmodified _YRQWQHQYRQW_ 0 0 0 REV__ENST00000577066.2_1_17:79004653-79005004:-|nuORF REV__ENST00000577066.2_1_17:79004653-79005004:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 839.4635009765625 2 839.902922 1677.79129 NaN NaN NaN NaN NaN NaN NaN 177.04 1 177.04 176.54 177.54 0 0 0 0 0.23698 1 36674 36674 0 0 1 + 55368 23212 36585 36606 54169 54169 -0.020492360051775904 YRRASEFPRVL 11 Unmodified _YRRASEFPRVL_ 0 0 0 ENST00000367498.7_1_1:185280415-185286453:-|nuORF ENST00000367498.7_1_1:185280415-185286453:-|nuORF ENST00000367498.7_1_1:185280415-185286453:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.24176025390625 3 465.261482 1392.76262 -0.08292 -3.8579E-05 0.41149 0.00019145 0.32858 0.00015287 465.5961457561101 48.377 0.31488 45.427 45.226 45.541 -2.9499 13 8 2 0 0 0 0.79645 1 8859 8859 4.1166 1.2733 1 996190 55369 9070 36586 36607 54170 54170 0.08194646365677727 YRRFLELKFWP 11 Unmodified _YRRFLELKFWP_ 0 0 0 FKRP|p.G474W|1|0.12|ENSG00000181027|chr19:46756870-46756870|G/T|missense_variant FKRP|p.G474W|1|0.12|ENSG00000181027|chr19:46756870-46756870|G/T|missense_variant FKRP|p.G474W|1|0.12|ENSG00000181027|chr19:46756870-46756870|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 777.9064331054688 2 777.932628 1553.8507 NaN NaN NaN NaN NaN NaN NaN 168.28 1 163.39 162.89 163.89 -4.8916 0 0 0 0.23698 1 33164 33164 1.3295 0.9789 1 55370 11818 36587 36608 54171 54171 0.09593266956289881 YRRFWAWK 8 Unmodified _YRRFWAWK_ 0 0 0 REV__ENSG00000128731|ENST00000261609|HERC2 REV__ENSG00000128731|ENST00000261609|HERC2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 606.841796875 2 606.824892 1211.63523 NaN NaN NaN NaN NaN NaN NaN 10.82 1 10.82 10.32 11.32 0 0 0 0 0.21486 1 1381 1381 0 0 1 + 55371 15934 36588 36609 54172 54172 0.03787970282155584 YRRHRRQHSHH 11 Unmodified _YRRHRRQHSHH_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4094848632812 2 785.409572 1568.80459 NaN NaN NaN NaN NaN NaN NaN 129.34 1 124.71 124.21 125.21 -4.6292 0 0 0 0.23698 1 25493 25493 0.30703 0 1 + 55372 18486 36589 36610 54173 54173 0.0429405961745033 YRRKRLGV 8 Unmodified _YRRKRLGV_ 0 0 0 UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant;ENSG00000110057|ENST00000227471|UNC93B1;ENST00000533424.5_1_11:67770773-67771486:-|nuORF;ENST00000530138.3_1_11:67766987-67771573:-|nuORF UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 350.1925048828125 3 349.88932 1046.64613 -0.81187 -0.00028407 0.62631 0.00021914 -0.18556 -6.4925E-05 349.88951432749917 25.522 1.0369 23.668 22.881 23.918 -1.8534 41 29 2 0 0 0 0.89687 1 4129 4129 3.2813 2.6545 1 838040 55373 2556 36590 36611 54174 54174 0.12467372656465159 YRRREHRRRV 10 Unmodified _YRRREHRRRV_ 0 0 0 REV__sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 REV__sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3924560546875 2 742.432516 1482.85048 NaN NaN NaN NaN NaN NaN NaN 166.68 1 161.73 161.23 162.23 -4.9484 0 0 0 2.8426 1 32689 32689 0.043787 0.017581 1 + 55374 24710 36591 36612 54175 54175 0.12836704799656218 YRRRFPRK 8 Unmodified _YRRRFPRK_ 0 0 0 ENST00000484423.5_1_1:145576054-145578613:+|nuORF;PIAS3|p.L222Cfs*56|1|0.24|ENSG00000131788|chr1:145855741-145855741|G/-|frameshift_variant;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3 ENST00000484423.5_1_1:145576054-145578613:+|nuORF ENST00000484423.5_1_1:145576054-145578613:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2757568359375 2 589.854516 1177.69448 NaN NaN NaN NaN NaN NaN NaN 10.002 1 9.2073 8.7073 9.7073 -0.79424 0 0 0 0.21486 1 1209 1209 0 0 1 55375 3694 36592 36613 54176 54176 0.11273866296346569 YRRRRRMKRPF 11 Unmodified _YRRRRRMKRPF_ 0 0 0 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.274658203125 3 541.319671 1620.93718 NaN NaN NaN NaN NaN NaN NaN 157.97 1 153.18 152.68 153.68 -4.7901 0 0 0 0.22632 1 31416 31416 0.026206 0 1 55376 6867 36593 36614 54177 54177 0.15155368029877536 YRRRRRMKRPF 11 Unmodified _YRRRRRMKRPF_ 0 0 0 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3836669921875 2 811.475869 1620.93718 NaN NaN NaN NaN NaN NaN NaN 167.55 1 162.76 162.26 163.26 -4.7898 0 0 0 0.23698 1 33801 33801 0 0 1 55377 6867 36593 36614 54178 54178 0.15155368029877536 YRRRRRMKRPF 11 Unmodified _YRRRRRMKRPF_ 0 0 0 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 811.3641967773438 2 811.475869 1620.93718 NaN NaN NaN NaN NaN NaN NaN 178.02 1 173.23 172.73 173.73 -4.7898 0 0 0 0.22632 1 36420 36420 0 0 1 55378 6867 36593 36614 54179 54179 0.15155368029877536 YRRRRRMKRPF 11 Unmodified _YRRRRRMKRPF_ 0 0 0 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2749633789062 3 541.319671 1620.93718 NaN NaN NaN NaN NaN NaN NaN 158.67 1 153.4 152.9 153.9 -5.2712 0 0 0 0.22632 1 30786 30786 0.026206 0.026206 1 55379 6867 36593 36614 54180 54180 0.15155368029877536 YRRRRRMKRPF 11 Unmodified _YRRRRRMKRPF_ 0 0 0 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 811.3595581054688 2 811.475869 1620.93718 NaN NaN NaN NaN NaN NaN NaN 171.37 1 166.5 166 167 -4.873 0 0 0 0.22632 1 33959 33959 0 0 1 55380 6867 36593 36614 54181 54181 0.15155368029877536 YRRVINRNNRL 11 Unmodified _YRRVINRNNRL_ 0 0 0 tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1 tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1 tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 491.795166015625 3 491.955164 1472.84366 NaN NaN NaN NaN NaN NaN NaN 140.27 1 140.27 139.77 140.77 0 0 0 0 0.22632 1 27920 27920 4.0508 4.0502 1 55381 26316 36594 36615 54182 54182 0.12615347128462417 YRRWHTPLHIC 11 Unmodified _YRRWHTPLHIC_ 0 0 0 ENSG00000134640|ENST00000257068|MTNR1B ENSG00000134640|ENST00000257068|MTNR1B ENSG00000134640|ENST00000257068|MTNR1B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 742.3865356445312 2 741.38278 1480.75101 0.19358 0.00014351 1.1952 0.00088609 1.3888 0.0010296 741.3836196654734 23.578 0.3812 22.124 21.925 22.306 -1.4535 22 10 3 0 0 0 0.65924 1 3804 3804 0.026206 0 1 3015400 55382 3866 36595 36616 54183 54183 0.02986126070732098 YRRWMIRKRMR 11 Unmodified _YRRWMIRKRMR_ 0 0 0 ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant;ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 551.2537231445312 3 551.313529 1650.91876 NaN NaN NaN NaN NaN NaN NaN 128.42 1 128.42 127.92 128.92 0 0 0 0 0.22632 1 25363 25363 0 0 1 55383 239 36596 36617 54184 54184 0.11933490063620411 YRRWRWRKRWR 11 Unmodified _YRRWRWRKRWR_ 0 0 0 REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2835083007812 3 602.345097 1804.01346 NaN NaN NaN NaN NaN NaN NaN 75.394 1 75.394 74.894 75.894 0 0 0 0 0.22632 1 14643 14643 0 0 1 + 55384 22500 36597 36618 54185 54185 0.14361507921489647 YRRWRWRKRWR 11 Unmodified _YRRWRWRKRWR_ 0 0 0 REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2843627929688 3 602.345097 1804.01346 NaN NaN NaN NaN NaN NaN NaN 144.03 1 144.03 143.53 144.53 0 0 0 0 0.22632 1 28762 28762 0 0 1 + 55385 22500 36597 36618 54186 54186 0.14361507921489647 YRRWRWRKRWR 11 Unmodified _YRRWRWRKRWR_ 0 0 0 REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2883911132812 3 602.345097 1804.01346 NaN NaN NaN NaN NaN NaN NaN 75.295 1 71.913 71.413 72.413 -3.3817 0 0 0 0.22632 1 14687 14687 0 0 1 + 55386 22500 36597 36618 54187 54187 0.14361507921489647 YRRWRWRKRWR 11 Unmodified _YRRWRWRKRWR_ 0 0 0 REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2921752929688 3 602.345097 1804.01346 NaN NaN NaN NaN NaN NaN NaN 136.57 1 131.93 131.43 132.43 -4.6399 0 0 0 0.22632 1 26951 26951 0 0 1 + 55387 22500 36597 36618 54188 54188 0.14361507921489647 YRRWRWRKRWR 11 Unmodified _YRRWRWRKRWR_ 0 0 0 REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.28466796875 3 602.345097 1804.01346 NaN NaN NaN NaN NaN NaN NaN 159.02 1 153.75 153.25 154.25 -5.2748 0 0 0 0.22632 1 30866 30866 0.026206 0.026206 1 + 55388 22500 36597 36618 54189 54189 0.14361507921489647 YRRYKHVDWLY 11 Unmodified _YRRYKHVDWLY_ 0 0 0 SNX33|p.F270V|1|0.34|ENSG00000173548|chr15:75649910-75649910|T/G|missense_variant SNX33|p.F270V|1|0.34|ENSG00000173548|chr15:75649910-75649910|T/G|missense_variant SNX33|p.F270V|1|0.34|ENSG00000173548|chr15:75649910-75649910|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2867431640625 3 533.612404 1597.81538 NaN NaN NaN NaN NaN NaN NaN 58.278 1 55.026 54.526 55.526 -3.2517 0 0 0 0.23698 1 10827 10827 0.50596 0.41111 1 55389 25706 36598 36619 54190 54190 0.04038604428524195 YRSIQVGP 8 Unmodified _YRSIQVGP_ 0 0 0 ENST00000535009.5_1_11:68816453-68846494:+|nuORF;TPCN2|p.G597Wfs*6|1|0.39|ENSG00000162341|chr11:69085234-69085235|-/T|frameshift_variant;TPCN2|p.R704Afs*17|1|0.1|ENSG00000162341|chr11:69087132-69087132|C/-|frameshift_variant;ENSG00000162341|ENST00000294309|TPCN2;ENST00000534832.1_1_11:68816498-68821673:+|nuORF ENST00000535009.5_1_11:68816453-68846494:+|nuORF ENST00000535009.5_1_11:68816453-68846494:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.2315673828125 2 460.253434 918.492316 NaN NaN NaN NaN NaN NaN NaN 90.734 1 86.874 86.374 87.374 -3.8595 0 0 0 0.21486 1 17754 17754 9.3474 4.1168 1 55390 5322 36599 36620 54191 54191 0.029809181002860896 YRTTVIQY 8 Unmodified _YRTTVIQY_ 0 0 0 GTF3C1|p.D682Y|1|0.3|ENSG00000077235|chr16:27501208-27501208|C/A|missense_variant GTF3C1|p.D682Y|1|0.3|ENSG00000077235|chr16:27501208-27501208|C/A|missense_variant GTF3C1|p.D682Y|1|0.3|ENSG00000077235|chr16:27501208-27501208|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.265380859375 2 522.279649 1042.54475 0.25169 0.00013145 -2.4428 -0.0012758 -2.1911 -0.0011444 522.7801863421662 133.28 0.14053 128.47 128.38 128.52 -4.8174 5 3 2 0 0 0 0.73426 1 25643 25643 9.3474 0 1 1004000 55391 11869 36600 36621 54192 54192 0.025174564432290936 YRVFLNKWKKW 11 Unmodified _YRVFLNKWKKW_ 0 0 0 REV__ENST00000357103.4_1_12:1863654-1887044:+|nuORF REV__ENST00000357103.4_1_12:1863654-1887044:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.692138671875 3 523.301389 1566.88234 -0.3963 -0.00020739 2.0186 0.0010563 1.6222 0.00084893 523.636964396927 94.073 0.42093 89.93 89.752 90.173 -4.1435 18 11 2 0 0 0 0.66298 1 17983 17983 0.094841 0.068635 1 3060800 + 55392 20822 36601 36622 54193 54193 0.12157259710238577 YRVLLFLLL 9 Unmodified _YRVLLFLLL_ 0 0 0 REV__RP11-35N6.1|p.P81Qfs*15|1|0.3|ENSG00000148123|chr9:101270055-101270055|C/-|frameshift_variant REV__RP11-35N6.1|p.P81Qfs*15|1|0.3|ENSG00000148123|chr9:101270055-101270055|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 383.9242858886719 3 383.917994 1148.73215 NaN NaN NaN NaN NaN NaN NaN 10.477 1 10.477 9.977 10.977 0 0 0 0 0.23508 1 1312 1312 0 0 1 + 55393 24578 36602 36623 54194 54194 0.16373519718626994 YRVRWKDT 8 Unmodified _YRVRWKDT_ 0 0 0 REV__ENSG00000260314|ENST00000569591|MRC1 REV__ENSG00000260314|ENST00000569591|MRC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.2048034667969 3 375.205085 1122.59343 NaN NaN NaN NaN NaN NaN NaN 25.383 1 23.735 23.235 24.235 -1.6482 0 0 0 0.21486 1 4451 4451 1.6526 0 1 + 55394 19880 36603 36624 54195 54195 0.03703369802974521 YRVYQPVRYYY 11 Unmodified _YRVYQPVRYYY_ 0 0 0 nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF nc|ENSG00000242265|Q86TG7|PEG10 nc|ENSG00000242265|Q86TG7|PEG10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.39599609375 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 118.38 1 113.88 113.38 114.38 -4.502 0 0 0 0.23264 1 23341 23341 6.2058 2.9245 1 55395 7865 36604 36625 54196 54196 0.0159609344304954 YRVYQPVRYYY 11 Unmodified _YRVYQPVRYYY_ 0 0 0 nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF nc|ENSG00000242265|Q86TG7|PEG10 nc|ENSG00000242265|Q86TG7|PEG10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3971557617188 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 118.6 1 114.1 113.6 114.6 -4.502 0 0 0 0.22632 1 23386 23386 0.172 0 1 55396 7865 36604 36625 54197 54197 0.0159609344304954 YRVYQPVRYYY 11 Unmodified _YRVYQPVRYYY_ 0 0 0 nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF nc|ENSG00000242265|Q86TG7|PEG10 nc|ENSG00000242265|Q86TG7|PEG10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3971557617188 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 118.63 1 114.13 113.63 114.63 -4.502 0 0 0 0.23264 1 23391 23391 6.2058 3.2105 1 55397 7865 36604 36625 54198 54198 0.0159609344304954 YRVYQPVRYYY 11 Unmodified _YRVYQPVRYYY_ 0 0 0 nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF nc|ENSG00000242265|Q86TG7|PEG10 nc|ENSG00000242265|Q86TG7|PEG10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.4054565429688 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 118.66 1 114.16 113.66 114.66 -4.502 0 0 0 0.23698 1 23397 23397 1.3295 0.13619 1 55398 7865 36604 36625 54199 54199 0.0159609344304954 YRVYQPVRYYY 11 Unmodified _YRVYQPVRYYY_ 0 0 0 nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF nc|ENSG00000242265|Q86TG7|PEG10 nc|ENSG00000242265|Q86TG7|PEG10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.39794921875 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 150.85 1 146.12 145.62 146.62 -4.7323 0 0 0 0.23698 1 29961 29961 1.3295 0.25807 1 55399 7865 36604 36625 54200 54200 0.0159609344304954 YRVYQPVRYYY 11 Unmodified _YRVYQPVRYYY_ 0 0 0 nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF nc|ENSG00000242265|Q86TG7|PEG10 nc|ENSG00000242265|Q86TG7|PEG10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3941650390625 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 118.15 1 113.54 113.04 114.04 -4.6106 0 0 0 0.23634 1 22671 22671 3.2813 0.28607 1 55400 7865 36604 36625 54201 54201 0.0159609344304954 YRVYQPVRYYY 11 Unmodified _YRVYQPVRYYY_ 0 0 0 nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF nc|ENSG00000242265|Q86TG7|PEG10 nc|ENSG00000242265|Q86TG7|PEG10 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3967895507812 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 130.02 1 125.19 124.69 125.69 -4.8355 0 0 0 0.23698 1 24964 24964 1.3295 0 1 55401 7865 36604 36625 54202 54202 0.0159609344304954 YRVYQPVRYYY 11 Unmodified _YRVYQPVRYYY_ 0 0 0 nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF nc|ENSG00000242265|Q86TG7|PEG10 nc|ENSG00000242265|Q86TG7|PEG10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3985595703125 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 117.8 1 113.39 112.89 113.89 -4.4088 0 0 0 0.22632 1 22669 22669 0.172 0 1 55402 7865 36604 36625 54203 54203 0.0159609344304954 YRVYQPVRYYY 11 Unmodified _YRVYQPVRYYY_ 0 0 0 nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF nc|ENSG00000242265|Q86TG7|PEG10 nc|ENSG00000242265|Q86TG7|PEG10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3951416015625 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 118 1 113.59 113.09 114.09 -4.4088 0 0 0 0.22632 1 22710 22710 0.172 0.077159 1 55403 7865 36604 36625 54204 54204 0.0159609344304954 YRWPMRYDQWW 11 Unmodified _YRWPMRYDQWW_ 0 0 0 nc|ENSG00000126107|Q5T447-2|HECTD3;HECTD3|p.V564Cfs*41|1|0.18|ENSG00000126107|chr1:45006728-45006728|G/-|frameshift_variant;ENSG00000126107|ENST00000372172|HECTD3 nc|ENSG00000126107|Q5T447-2|HECTD3 nc|ENSG00000126107|Q5T447-2|HECTD3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 843.4074096679688 2 843.885352 1685.75615 NaN NaN NaN NaN NaN NaN NaN 177.82 1 177.82 177.32 178.32 0 0 0 0 0.23698 1 36834 36834 0 0 1 55404 3416 36605 36626 54205 54205 -0.059296148573366736 YRWRNPGS 8 Unmodified _YRWRNPGS_ 0 0 0 nc|ENSG00000116117|Q8TEW8-4|PARD3B;ENST00000406610.6_2_2:205410550-205550968:+|nuORF nc|ENSG00000116117|Q8TEW8-4|PARD3B nc|ENSG00000116117|Q8TEW8-4|PARD3B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1036.513671875 1 1035.51189 1034.50461 0.1476 0.00015284 -1.2621 -0.0013069 -1.1145 -0.0011541 1035.5105914082083 57.015 0.66457 53.839 53.58 54.245 -3.1761 26 18 2 0 0 0 0.70613 1 10621 10621 13.508 3.434 1 1693100 55405 9544 36606 36627 54206 54206 -0.011260454366720296 YRWRNPGS 8 Unmodified _YRWRNPGS_ 0 0 0 nc|ENSG00000116117|Q8TEW8-4|PARD3B;ENST00000406610.6_2_2:205410550-205550968:+|nuORF nc|ENSG00000116117|Q8TEW8-4|PARD3B nc|ENSG00000116117|Q8TEW8-4|PARD3B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 1035.51189 1034.50461 0.50444 0.00052235 -1.6673 -0.0017265 -1.1628 -0.0012041 1035.5100871604425 53.966 0.71474 53.966 53.603 54.318 0 0.056972 -0.00042937 NaN 13.508 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1388300 55406 9544 36606 36627 -0.011260454366720296 YRWRNPGS 8 Unmodified _YRWRNPGS_ 0 0 0 nc|ENSG00000116117|Q8TEW8-4|PARD3B;ENST00000406610.6_2_2:205410550-205550968:+|nuORF nc|ENSG00000116117|Q8TEW8-4|PARD3B nc|ENSG00000116117|Q8TEW8-4|PARD3B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 1035.51189 1034.50461 -0.31311 -0.00032422 -0.84134 -0.00087122 -1.1544 -0.0011954 1035.5110320531976 56.821 0.62211 53.927 53.578 54.2 -2.8944 0.01741 0.00042591 NaN 13.508 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2266000 55407 9544 36606 36627 -0.011260454366720296 YRWRNPGS 8 Unmodified _YRWRNPGS_ 0 0 0 nc|ENSG00000116117|Q8TEW8-4|PARD3B;ENST00000406610.6_2_2:205410550-205550968:+|nuORF nc|ENSG00000116117|Q8TEW8-4|PARD3B nc|ENSG00000116117|Q8TEW8-4|PARD3B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1 1035.51189 1034.50461 0.30492 0.00031575 -1.239 -0.001283 -0.93407 -0.00096724 1035.510395493469 57.095 0.52184 53.906 53.653 54.175 -3.1895 -0.0036548 1.4138E-05 NaN 13.508 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2387300 55408 9544 36606 36627 -0.011260454366720296 YRWRVRWMRVL 11 Unmodified _YRWRVRWMRVL_ 0 0 0 REV__ENSG00000184345|ENST00000333127|IQCF2 REV__ENSG00000184345|ENST00000333127|IQCF2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2582397460938 3 540.97339 1619.89834 0.44749 0.00024208 4.2249 0.0022856 4.6724 0.0025276 541.3095851441352 120.46 0.13728 115.99 115.89 116.02 -4.467 5 3 2 0 0 0 0.96225 1 23196 23196 0.40827 0.31342 1 788300 + 55409 18891 36607 36628 54207 54207 0.11318642675496449 YRWVHHKYNFD 11 Unmodified _YRWVHHKYNFD_ 0 0 0 nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I nc|ENSG00000100346|Q9P0X4-3|CACNA1I nc|ENSG00000100346|Q9P0X4-3|CACNA1I MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2769165039062 3 522.252987 1563.73713 NaN NaN NaN NaN NaN NaN NaN 105.22 1 105.22 104.72 105.72 0 0 0 0 0.22632 1 20682 20682 0.11104 0 1 55410 1958 36608 36629 54208 54208 -0.022188281567423473 YRWVHHKYNFD 11 Unmodified _YRWVHHKYNFD_ 0 0 0 nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I nc|ENSG00000100346|Q9P0X4-3|CACNA1I nc|ENSG00000100346|Q9P0X4-3|CACNA1I MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2694091796875 3 522.252987 1563.73713 NaN NaN NaN NaN NaN NaN NaN 109.55 1 105.18 104.68 105.68 -4.3776 0 0 0 0.22632 1 21590 21590 0.11104 0.079632 1 55411 1958 36608 36629 54209 54209 -0.022188281567423473 YRYLLRCC 8 Unmodified _YRYLLRCC_ 0 0 0 ENSG00000232859|ENST00000379102|LYRM9 ENSG00000232859|ENST00000379102|LYRM9 ENSG00000232859|ENST00000379102|LYRM9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 363.8425598144531 3 363.849257 1088.52594 NaN NaN NaN NaN NaN NaN NaN 9.3072 1 8.2726 7.7726 8.7726 -1.0347 0 0 0 0.21486 1 939 939 0 0 1 55412 7817 36609 36630 54210 54210 -0.01478119723810778 YRYTWLLWWIT 11 Unmodified _YRYTWLLWWIT_ 0 0 0 sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1 sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1 sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 534.3048095703125 3 534.281883 1599.82382 NaN NaN NaN NaN NaN NaN NaN 175.25 1 170.37 169.87 170.87 -4.8845 0 0 0 0.22632 1 34852 34852 0.094841 0.087559 1 55413 25750 36610 36631 54211 54211 0.047901583451221086 YSAADAVEATS 11 Unmodified _YSAADAVEATS_ 0 0 0 REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2 REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 542.2991333007812 2 542.743293 1083.47203 NaN NaN NaN NaN NaN NaN NaN 54.926 1 51.791 51.291 52.291 -3.1352 0 0 0 0.20277 1 10141 10141 18.146 3.3081 1 + 55414 16971 36611 36632 54212 54212 -0.06636342140859597 YSAAELKCRY 10 Unmodified _YSAAELKCRY_ 0 0 0 nc|ENSG00000124092|Q8NI51-11|CTCFL;nc|ENSG00000124092|Q8NI51-6|CTCFL;nc|ENSG00000124092|Q8NI51-5|CTCFL;nc|ENSG00000124092|Q8NI51-10|CTCFL;nc|ENSG00000124092|Q8NI51-2|CTCFL;nc|ENSG00000124092|Q8NI51-8|CTCFL;CTCFL|p.A642Efs*10|1|0.05|ENSG00000124092|chr20:57498614-57498617|CTGG/-|frameshift_variant;ENSG00000124092|ENST00000243914|CTCFL;nc|ENSG00000124092|Q8NI51-3|CTCFL;nc|ENSG00000124092|Q8NI51-7|CTCFL nc|ENSG00000124092|Q8NI51-11|CTCFL nc|ENSG00000124092|Q8NI51-11|CTCFL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.292724609375 2 602.294973 1202.57539 NaN NaN NaN NaN NaN NaN NaN 48.33 1 48.33 47.83 48.83 0 0 0 0 2.8426 1 9126 9126 3.5927 0 1 55415 740 36612 36633 54213 54213 -0.017791332340493682 YSALEEMD 8 Unmodified _YSALEEMD_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7391662597656 2 479.197133 956.379713 NaN NaN NaN NaN NaN NaN NaN 61.622 1 58.66 58.16 59.16 -2.9614 0 0 0 0.21323 1 11881 11881 14.582 5.1986 1 + 55416 18305 36613 36634 54214 54214 -0.1002214347872723 YSARIEENI 9 Unmodified _YSARIEENI_ 0 0 0 ENSG00000134757|ENST00000257189|DSG3;DSG3|p.P369Qfs*6|1|0.31|ENSG00000134757|chr18:31464214-31464214|C/-|frameshift_variant;DSG3|p.T441Lfs*10|1|0.2|ENSG00000134757|chr18:31465363-31465363|A/-|frameshift_variant ENSG00000134757|ENST00000257189|DSG3 ENSG00000134757|ENST00000257189|DSG3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7671508789062 2 547.77747 1093.54039 0.20817 0.00011403 0.70244 0.00038478 0.91061 0.00049881 547.7777861901417 65.089 0.51411 62.042 61.659 62.173 -3.047 16 14 2 0 0 0 0.74655 1 12591 12591 15.847 0 1 917550 55417 3872 36614 36635 54215 54215 -0.0026405277033063612 YSARLPCF 8 Unmodified _YSARLPCF_ 0 0 0 REV__ENST00000550219.1_1_9:131710355-131710682:+|nuORF REV__ENST00000550219.1_1_9:131710355-131710682:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7367248535156 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 114.6 1 114.6 114.1 115.1 0 0 0 0 0.22636 1 22545 22545 0.25148 0.18749 1 + 55418 22922 36615 36636 54216 54216 -0.02093826663121945 YSARLPCF 8 Unmodified _YSARLPCF_ 0 0 0 REV__ENST00000550219.1_1_9:131710355-131710682:+|nuORF REV__ENST00000550219.1_1_9:131710355-131710682:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7351989746094 2 478.736563 955.458573 NaN NaN NaN NaN NaN NaN NaN 163.5 1 158.43 157.93 158.93 -5.0648 0 0 0 0.23025 1 31816 31816 0.25148 0 1 + 55419 22922 36615 36636 54217 54217 -0.02093826663121945 YSASDSCSPP 10 Unmodified _YSASDSCSPP_ 0 0 0 ENSG00000166268|ENST00000552032|MYRFL ENSG00000166268|ENST00000552032|MYRFL ENSG00000166268|ENST00000552032|MYRFL MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 338.4687805175781 3 338.467535 1012.38078 NaN NaN NaN NaN NaN NaN NaN 46.038 1 46.038 45.538 46.538 0 0 0 0 2.8426 1 8666 8666 3.8763 3.8031 1 55420 5711 36616 36637 54218 54218 -0.12491929109830835 YSATCVFF 8 Unmodified _YSATCVFF_ 0 0 0 REV__ENST00000400000.6_1_18:9954292-9954346:+|nuORF REV__ENST00000400000.6_1_18:9954292-9954346:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.16241455078125 3 313.142323 936.40514 NaN NaN NaN NaN NaN NaN NaN 157.78 1 152.51 152.01 153.01 -5.2712 0 0 0 0.21486 1 30608 30608 1.8442 0 1 + 55421 21351 36617 36638 54219 54219 -0.06560624165638274 YSCALLFF 8 Unmodified _YSCALLFF_ 0 0 0 ENST00000307533.10_1_4:6676994-6677156:+|nuORF ENST00000307533.10_1_4:6676994-6677156:+|nuORF ENST00000307533.10_1_4:6676994-6677156:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.7689208984375 2 482.235864 962.457176 NaN NaN NaN NaN NaN NaN NaN 123.49 1 118.76 118.26 119.26 -4.731 0 0 0 0.21486 1 23723 23723 10.183 0.83596 1 55422 8614 36618 36639 54220 54220 -0.02555460751875671 YSCAMLEC 8 Unmodified _YSCAMLEC_ 0 0 0 REV__sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1 REV__sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.17138671875 2 460.171549 918.328546 NaN NaN NaN NaN NaN NaN NaN 5.5419 1 4.9156 4.4156 5.4156 -0.62626 0 0 0 0.21486 1 302 302 0 0 1 + 55423 24717 36619 36640 54221 54221 -0.13388507048807696 YSCAMLEC 8 Unmodified _YSCAMLEC_ 0 0 0 REV__sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1 REV__sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.17144775390625 2 460.171549 918.328546 NaN NaN NaN NaN NaN NaN NaN 6.3274 1 5.7011 5.2011 6.2011 -0.62626 0 0 0 0.21486 1 458 458 0 0 1 + 55424 24717 36619 36640 54222 54222 -0.13388507048807696 YSCIYDECHK 10 Unmodified _YSCIYDECHK_ 0 0 0 REV__DSC1|p.V847I|1|0.39|ENSG00000134765|chr18:31130660-31130660|C/T|missense_variant REV__DSC1|p.V847I|1|0.39|ENSG00000134765|chr18:31130660-31130660|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7572631835938 2 630.754824 1259.49509 NaN NaN NaN NaN NaN NaN NaN 47.735 1 47.735 47.235 48.235 0 0 0 0 2.8426 1 9005 9005 0.0013812 0 1 + 55425 13751 36620 36641 54223 54223 -0.12427362619405358 YSCPPRPLY 9 Unmodified _YSCPPRPLY_ 0 0 0 REV__GCM2|p.A398Cfs*6|1|0.45|ENSG00000124827|chr6:10874325-10874326|-/G|frameshift_variant REV__GCM2|p.A398Cfs*6|1|0.45|ENSG00000124827|chr6:10874325-10874326|-/G|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.780029296875 2 548.268227 1094.5219 0.39437 0.00021622 2.0389 0.0011179 2.4333 0.0013341 548.2691372869511 67.137 0.62868 63.811 63.476 64.104 -3.3268 20 17 2 0 0 0 0.8319 1 12688 12688 12.532 8.2023 1 674240 + 55426 15797 36621 36642 54224 54224 -0.02157885945871385 YSCRNELCAW 10 Unmodified _YSCRNELCAW_ 0 0 0 REV__nc|ENSG00000077254|Q8TEY7-3|USP33 REV__nc|ENSG00000077254|Q8TEY7-3|USP33 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.764404296875 2 622.762983 1243.51141 NaN NaN NaN NaN NaN NaN NaN 120.67 1 116.14 115.64 116.64 -4.5221 0 0 0 0.22588 1 23789 23789 3.5965 0 1 + 55427 14364 36622 36643 54225 54225 -0.10060236662639 YSDAIQPPA 9 Unmodified _YSDAIQPPA_ 0 0 0 REV__ENST00000411526.5_1_7:154736168-154736312:+|nuORF REV__ENST00000411526.5_1_7:154736168-154736312:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2344055175781 2 481.234907 960.455261 0.29455 0.00014175 -0.42037 -0.0002023 -0.12582 -6.0549E-05 481.23467486280174 66.524 0.42458 63.027 62.795 63.219 -3.4965 20 11 2 0 0 0 0.55979 1 12448 12448 15.847 1.0089 1 952300 + 55428 21425 36623 36644 54226 54226 -0.026547982361535105 YSDDNFGNY 9 Unmodified _YSDDNFGNY_ 0 0 0 ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant;ZC3H6|p.Q197Tfs*11|1|0.21|ENSG00000188177|chr2:112310129-112310130|-/A|frameshift_variant;ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant;ZC3H6|p.S1077Vfs*4|1|0.35|ENSG00000188177|chr2:112332141-112332141|A/-|frameshift_variant;ENSG00000188177|ENST00000409871|ZC3H6 ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7774658203125 2 547.706711 1093.39887 0.34702 0.00019007 -0.48564 -0.00026599 -0.13862 -7.5921E-05 547.7064794074748 73.324 0.78175 73.324 72.989 73.771 0 36 21 2 0 0 0 0.62921 1 14261 14261 30.637 20.453 1 2921400 55429 7157 36624 36645 54227 54227 -0.14409470863461138 YSDDNFGNY 9 Unmodified _YSDDNFGNY_ 0 0 0 ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant;ZC3H6|p.Q197Tfs*11|1|0.21|ENSG00000188177|chr2:112310129-112310130|-/A|frameshift_variant;ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant;ZC3H6|p.S1077Vfs*4|1|0.35|ENSG00000188177|chr2:112332141-112332141|A/-|frameshift_variant;ENSG00000188177|ENST00000409871|ZC3H6 ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7679443359375 2 547.706711 1093.39887 0.1777 9.7328E-05 -0.16609 -9.0967E-05 0.011613 6.3606E-06 547.7065459376182 77.404 0.70972 73.941 73.578 74.287 -3.4633 33 19 3 0 0 0 0.0034253 1 15087 15087 131.27 93.294 1 2928200 55430 7157 36624 36645 54228 54228 -0.14409470863461138 YSDDNFGNY 9 Unmodified _YSDDNFGNY_ 0 0 0 ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant;ZC3H6|p.Q197Tfs*11|1|0.21|ENSG00000188177|chr2:112310129-112310130|-/A|frameshift_variant;ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant;ZC3H6|p.S1077Vfs*4|1|0.35|ENSG00000188177|chr2:112332141-112332141|A/-|frameshift_variant;ENSG00000188177|ENST00000409871|ZC3H6 ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7728271484375 2 547.706711 1093.39887 0.049554 2.7141E-05 0.12881 7.0549E-05 0.17836 9.769E-05 547.7066731383892 77.679 0.67342 73.913 73.575 74.248 -3.7664 31 18 2 0 0 0 0.27464 1 14743 14743 43.982 36.505 1 2280200 55431 7157 36624 36645 54229 54229 -0.14409470863461138 YSDDNFGNY 9 Unmodified _YSDDNFGNY_ 0 0 0 ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant;ZC3H6|p.Q197Tfs*11|1|0.21|ENSG00000188177|chr2:112310129-112310130|-/A|frameshift_variant;ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant;ZC3H6|p.S1077Vfs*4|1|0.35|ENSG00000188177|chr2:112332141-112332141|A/-|frameshift_variant;ENSG00000188177|ENST00000409871|ZC3H6 ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant ZC3H6|p.K196Nfs*4|1|0.1|ENSG00000188177|chr2:112310130-112310130|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.777587890625 2 547.706711 1093.39887 0.15727 8.6139E-05 -0.16745 -9.1714E-05 -0.01018 -5.5756E-06 547.706556683724 77.539 0.80157 73.88 73.434 74.236 -3.6588 36 22 2 0 0 0 0.023341 1 14743 14743 88.954 58.317 1 2663100 55432 7157 36624 36645 54230 54230 -0.14409470863461138 YSDEPLVRY 9 Unmodified _YSDEPLVRY_ 0 0 0 REV__ENSG00000180316|ENST00000636260|PNPLA1 REV__ENSG00000180316|ENST00000636260|PNPLA1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 381.2051086425781 3 381.188989 1140.54514 NaN NaN NaN NaN NaN NaN NaN 57.024 1 53.835 53.335 54.335 -3.1895 0 0 0 0.23508 1 10579 10579 4.897 0.36815 1 + 55433 18682 36625 36646 54231 54231 -0.019511686275791362 YSDESGNMDF 10 Oxidation (M) _YSDESGNM(Oxidation (M))DF_ YSDESGNM(1)DF YSDESGNM(76)DF 0 0 1 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 ENSG00000126247|ENST00000246533|CAPNS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2598876953125 2 590.708593 1179.40263 -0.08351 -4.933E-05 1.555 0.00091856 1.4715 0.00086923 590.7099630052387 46.793 0.97474 43.926 43.542 44.517 -2.8666 39 27 2 0 0 0 0.26842 1 8524 8524 75.761 39.634 1 1995300 55434 3423 36626 36647 54232 54232 58 -0.17989169151928763 YSDGKLQTVA 10 Unmodified _YSDGKLQTVA_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2784423828125 2 541.279846 1080.54514 NaN NaN NaN NaN NaN NaN NaN 55.397 1 52.262 51.762 52.762 -3.1352 0 0 0 2.8426 1 10237 10237 0.20733 0.079513 1 55435 5864 36627 36648 54233 54233 0.008088313724101681 YSDGYGRVY 9 Unmodified _YSDGYGRVY_ 0 0 0 nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2;ENST00000359369.8_1_22:36140254-36146490:-|nuORF nc|ENSG00000100320|O43251-3|RBFOX2 nc|ENSG00000100320|O43251-3|RBFOX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2784423828125 2 540.243264 1078.47197 0.16644 8.9918E-05 -0.25565 -0.00013811 -0.089209 -4.8195E-05 540.2430757985854 55.388 0.94277 52.253 51.923 52.866 -3.1352 69 26 4 0 0 0 0.0071415 3 10239 10239;10267;10269 110.67 99.463 1 84369000 55436 1952 36628 36649 54234;54235;54236 54234 -0.06412297350175322 YSDGYGRVY 9 Unmodified _YSDGYGRVY_ 0 0 0 nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2;ENST00000359369.8_1_22:36140254-36146490:-|nuORF nc|ENSG00000100320|O43251-3|RBFOX2 nc|ENSG00000100320|O43251-3|RBFOX2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2598266601562 2 540.243264 1078.47197 0.065807 3.5552E-05 -0.15527 -8.3885E-05 -0.089465 -4.8333E-05 540.2431560750773 55.347 0.97072 52.209 51.936 52.907 -3.1377 78 27 4 0 0 0 0.00016281 1 10252 10252 122.18 80.34 1 74228000 55437 1952 36628 36649 54237 54237 -0.06412297350175322 YSDGYGRVY 9 Unmodified _YSDGYGRVY_ 0 0 0 nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2;ENST00000359369.8_1_22:36140254-36146490:-|nuORF nc|ENSG00000100320|O43251-3|RBFOX2 nc|ENSG00000100320|O43251-3|RBFOX2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 540.243264 1078.47197 -0.0067937 -3.6703E-06 -0.10332 -5.582E-05 -0.11012 -5.949E-05 540.2431565087321 55.16 0.75656 52.277 51.94 52.696 -2.8837 0.030383 7.754E-05 NaN 122.18 60 21 4 NaN NaN NaN NaN 0 NaN NaN 0 95054000 55438 1952 36628 36649 -0.06412297350175322 YSDISGGGHPY 11 Unmodified _YSDISGGGHPY_ 0 0 0 nc|ENSG00000106771|Q9H330-3|TMEM245;ENSG00000106771|ENST00000374586|TMEM245 nc|ENSG00000106771|Q9H330-3|TMEM245 nc|ENSG00000106771|Q9H330-3|TMEM245 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3179931640625 2 576.751453 1151.48835 0.56346 0.00032498 -0.43699 -0.00025203 0.12647 7.2943E-05 576.7511924461239 43.982 0.64862 43.982 43.64 44.288 0 33 18 2 0 0 0 0.0034307 1 8260 8260 118.89 82.851 1 9099000 55439 2403 36629 36650 54238 54238 -0.0813321618406917 YSDISGGGHPY 11 Unmodified _YSDISGGGHPY_ 0 0 0 nc|ENSG00000106771|Q9H330-3|TMEM245;ENSG00000106771|ENST00000374586|TMEM245 nc|ENSG00000106771|Q9H330-3|TMEM245 nc|ENSG00000106771|Q9H330-3|TMEM245 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3338623046875 2 576.751453 1151.48835 -0.024666 -1.4226E-05 0.071349 4.1151E-05 0.046683 2.6925E-05 576.7514648128187 47.268 0.59241 44.399 44.149 44.742 -2.869 50 16 4 0 0 0 0.19194 1 8926 8926 45.7 25.285 1 12203000 55440 2403 36629 36650 54239 54239 -0.0813321618406917 YSDISGGGHPY 11 Unmodified _YSDISGGGHPY_ 0 0 0 nc|ENSG00000106771|Q9H330-3|TMEM245;ENSG00000106771|ENST00000374586|TMEM245 nc|ENSG00000106771|Q9H330-3|TMEM245 nc|ENSG00000106771|Q9H330-3|TMEM245 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3189697265625 2 576.751453 1151.48835 0.12198 7.0352E-05 -0.0036925 -2.1297E-06 0.11829 6.8222E-05 576.7514147000843 47.352 0.55165 44.41 44.134 44.686 -2.9421 47 15 4 0 0 0 0.32494 1 8609 8609 38.176 17.761 1 11836000 55441 2403 36629 36650 54240 54240 -0.0813321618406917 YSDISGGGHPY 11 Unmodified _YSDISGGGHPY_ 0 0 0 nc|ENSG00000106771|Q9H330-3|TMEM245;ENSG00000106771|ENST00000374586|TMEM245 nc|ENSG00000106771|Q9H330-3|TMEM245 nc|ENSG00000106771|Q9H330-3|TMEM245 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.33447265625 2 576.751453 1151.48835 -0.082894 -4.7809E-05 0.16241 9.3668E-05 0.079513 4.5859E-05 576.7514817259647 47.308 0.62125 44.358 44.087 44.708 -2.9499 56 17 5 0 0 0 0.093333 1 8657 8657 45.7 25.285 1 9973400 55442 2403 36629 36650 54241 54241 -0.0813321618406917 YSDKYGLGY 9 Unmodified _YSDKYGLGY_ 0 0 0 PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;ENST00000564794.1_1_16:23700038-23701081:+|nuORF PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2762451171875 2 533.248015 1064.48148 0.09365 4.9939E-05 -0.10755 -5.7349E-05 -0.013897 -7.4104E-06 533.2484928552774 72.787 2.973 72.787 72.371 75.344 0 323 84 6 0 0 0 1.4304E-05 4 14366 14366;14533;14542;14550 137.42 73.188 1 1739199999.9999998 55443 5755 36630 36651 54242;54243;54244;54245 54242 -0.0481852906466429 YSDKYGLGY 9 Unmodified _YSDKYGLGY_ 0 0 0 PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;ENST00000564794.1_1_16:23700038-23701081:+|nuORF PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2846069335938 2 533.248015 1064.48148 NaN NaN NaN NaN NaN NaN NaN 78.518 1 78.518 78.018 79.018 0 0 0 0 0.17061 1 15281 15281 27.629 0.40557 1 55444 5755 36630 36651 54246 54246 -0.0481852906466429 YSDKYGLGY 9 Unmodified _YSDKYGLGY_ 0 0 0 PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;ENST00000564794.1_1_16:23700038-23701081:+|nuORF PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.27392578125 2 533.248015 1064.48148 0.055227 2.945E-05 -0.058029 -3.0944E-05 -0.0028019 -1.4941E-06 533.2484874443625 76.819 2.8935 73.404 72.791 75.685 -3.4151 298 81 6 0 0 0 2.4079E-13 4 15159 15148;15159;15238;15358 163.04 108.26 1 1319800000 55445 5755 36630 36651 54247;54248;54249;54250 54248 -0.0481852906466429 YSDKYGLGY 9 Unmodified _YSDKYGLGY_ 0 0 0 PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;ENST00000564794.1_1_16:23700038-23701081:+|nuORF PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2769775390625 2 533.248015 1064.48148 0.42266 0.00022538 -0.39353 -0.00020985 0.029137 1.5537E-05 533.2483365946006 77.014 2.8075 73.247 72.81 75.618 -3.7664 306 79 6 0 0 0 8.0306E-08 2 14714 14714;14938 149.91 95.14 1 1124000000 55446 5755 36630 36651 54251;54252 54251 -0.0481852906466429 YSDKYGLGY 9 Unmodified _YSDKYGLGY_ 0 0 0 PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;ENST00000564794.1_1_16:23700038-23701081:+|nuORF PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2771606445312 2 533.248015 1064.48148 0.18099 9.6511E-05 -0.13902 -7.4131E-05 0.04197 2.238E-05 533.2485778801171 76.867 2.9129 73.233 72.749 75.662 -3.6337 326 82 6 0 0 0 2.4079E-13 5 14584 14584;14789;14837;14850;14932 163.04 95.14 1 1577799999.9999998 55447 5755 36630 36651 54253;54254;54255;54256;54257 54253 -0.0481852906466429 YSDKYGLGY 9 Unmodified _YSDKYGLGY_ 0 0 0 PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;ENST00000564794.1_1_16:23700038-23701081:+|nuORF PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2743530273438 2 533.248015 1064.48148 -0.065753 -3.5063E-05 -2.0014 -0.0010672 -2.0671 -0.0011023 533.2468982809987 79.577 1.6783 75.901 75.512 77.19 -3.676 91 47 2 0 0 0 0.037522 2 15318 15226;15318 76.825 12.588 1 9047000 55448 5755 36630 36651 54258;54259 54259 -0.0481852906466429 YSDLHAFYY 9 Unmodified _YSDLHAFYY_ 0 0 0 nc|ENSG00000185090|Q5VSG8-3|MANEAL;ENSG00000185090|ENST00000373045|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2630004882812 2 589.761289 1177.50803 0.34 0.00020052 -0.0073132 -4.313E-06 0.33269 0.00019621 589.7612269651546 120.82 0.97415 120.82 120.32 121.29 0 72 26 4 0 0 0 0.23744 1 23886 23886 52.268 37.43 1 23367000 55449 6959 36631 36652 54260 54260 -0.0736284017334583 YSDLHAFYY 9 Unmodified _YSDLHAFYY_ 0 0 0 nc|ENSG00000185090|Q5VSG8-3|MANEAL;ENSG00000185090|ENST00000373045|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2630004882812 2 589.761289 1177.50803 0.56454 0.00033294 -0.26992 -0.00015919 0.29462 0.00017375 589.7610515087335 125.77 0.88781 121.17 120.72 121.61 -4.5984 65 24 3 0 0 0 3.6964E-05 5 24791 24745;24789;24791;24833;24841 131.3 97.195 1 24379000 55450 6959 36631 36652 54261;54262;54263;54264;54265 54263 -0.0736284017334583 YSDLHAFYY 9 Unmodified _YSDLHAFYY_ 0 0 0 nc|ENSG00000185090|Q5VSG8-3|MANEAL;ENSG00000185090|ENST00000373045|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.262939453125 2 589.761289 1177.50803 0.71264 0.00042029 -0.2041 -0.00012037 0.50854 0.00029992 589.7611202563506 125.87 0.98079 121.1 120.61 121.59 -4.7681 70 27 4 0 0 0 0.0025997 4 24112 24112;24158;24206;24208 117.6 83.496 1 19216000 55451 6959 36631 36652 54266;54267;54268;54269 54266 -0.0736284017334583 YSDLHAFYY 9 Unmodified _YSDLHAFYY_ 0 0 0 nc|ENSG00000185090|Q5VSG8-3|MANEAL;ENSG00000185090|ENST00000373045|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.262939453125 2 589.761289 1177.50803 0.21846 0.00012884 0.26465 0.00015608 0.48311 0.00028492 589.7613617621616 125.71 1.0561 121.06 120.53 121.59 -4.6495 83 29 4 0 0 0 0.0098628 3 24161 24119;24161;24246 104.8 66.825 1 18786000 55452 6959 36631 36652 54270;54271;54272 54271 -0.0736284017334583 YSDRGSQSF 9 Unmodified _YSDRGSQSF_ 0 0 0 nc|ENSG00000211789|A0A075B6T6|TRAV12-2 nc|ENSG00000211789|A0A075B6T6|TRAV12-2 nc|ENSG00000211789|A0A075B6T6|TRAV12-2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.69873046875 2 523.73052 1045.44649 NaN NaN NaN NaN NaN NaN NaN 140.08 1 135.13 134.63 135.63 -4.952 0 0 0 0.23508 1 26954 26954 8.5933 1.304 1 55453 12578 36632 36653 54273 54273 -0.07441771872618119 YSDSDEEDED 10 Unmodified _YSDSDEEDED_ 0 0 0 HAP1|p.L341Rfs*3|1|0.55|ENSG00000173805|chr17:41731539-41731540|AA/-|frameshift_variant;nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257|HAP1 HAP1|p.L341Rfs*3|1|0.55|ENSG00000173805|chr17:41731539-41731540|AA/-|frameshift_variant HAP1|p.L341Rfs*3|1|0.55|ENSG00000173805|chr17:41731539-41731540|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2838134765625 2 602.194027 1202.3735 NaN NaN NaN NaN NaN NaN NaN 170.87 1 165.99 165.49 166.49 -4.873 0 0 0 0.22588 1 33834 33834 0.45834 0 1 55454 6311 36633 36654 54274 54274 -0.21959034967244406 YSDVELEC 8 Unmodified _YSDVELEC_ 0 0 0 ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7330017089844 2 479.197133 956.379713 NaN NaN NaN NaN NaN NaN NaN 61.59 1 58.629 58.129 59.129 -2.9614 0 0 0 0.21486 1 11875 11875 9.3474 0 1 55455 5053;26536 36634 36655 54275 54275 -0.1002214347872723 YSDVHNCSY 9 Unmodified _YSDVHNCSY_ 0 0 0 ENST00000557983.1_1_15:80423514-80429967:+|nuORF;nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6 ENST00000557983.1_1_15:80423514-80429967:+|nuORF ENST00000557983.1_1_15:80423514-80429967:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7930297851562 2 544.211106 1086.40766 0.34568 0.00018812 -0.63943 -0.00034799 -0.29375 -0.00015986 544.2106822191065 32.404 0.62833 32.404 32.082 32.71 0 27 15 2 0 0 0 0.10378 1 5905 5905 74.2 26.451 1 2996000 55456 1699 36635 36656 54276 54276 -0.1320882049865304 YSDVHNCSY 9 Unmodified _YSDVHNCSY_ 0 0 0 ENST00000557983.1_1_15:80423514-80429967:+|nuORF;nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6 ENST00000557983.1_1_15:80423514-80429967:+|nuORF ENST00000557983.1_1_15:80423514-80429967:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7857666015625 2 544.211106 1086.40766 -0.022127 -1.2042E-05 -0.0035228 -1.9171E-06 -0.025649 -1.3959E-05 544.2111547923172 35.04 0.59767 32.646 32.354 32.952 -2.3938 34 16 3 0 0 0 0.027537 1 6440 6440 110.55 45.318 1 3007200 55457 1699 36635 36656 54277 54277 -0.1320882049865304 YSDVHNCSY 9 Unmodified _YSDVHNCSY_ 0 0 0 ENST00000557983.1_1_15:80423514-80429967:+|nuORF;nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6 ENST00000557983.1_1_15:80423514-80429967:+|nuORF ENST00000557983.1_1_15:80423514-80429967:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7740478515625 2 544.211106 1086.40766 0.427 0.00023238 -0.94618 -0.00051492 -0.51919 -0.00028255 544.2103506810379 34.871 0.83388 32.594 32.061 32.895 -2.2766 42 23 3 0 0 0 0.33201 1 6149 6149 49.527 16.742 1 2092600 55458 1699 36635 36656 54278 54278 -0.1320882049865304 YSDVTAIAPQ 10 Unmodified _YSDVTAIAPQ_ 0 0 0 REV__nc|ENSG00000041982|P24821-6|TNC REV__nc|ENSG00000041982|P24821-6|TNC MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2669677734375 2 532.766571 1063.51859 0.33389 0.00017788 -0.23036 -0.00012273 0.10352 5.5154E-05 532.7663364099371 79.405 0.80877 75.6 75.055 75.864 -3.8048 64 22 4 0 0 0 0.71097 1 14965 14965 10.074 0 1 27322000 + 55459 14050 36636 36657 54279 54279 -0.010628575189230105 YSDYAYLRE 9 Unmodified _YSDYAYLRE_ 0 0 0 ENST00000565396.5_1_16:2050390-2052694:-|nuORF;ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598 ENST00000565396.5_1_16:2050390-2052694:-|nuORF ENST00000565396.5_1_16:2050390-2052694:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2701416015625 2 590.269478 1178.5244 -0.030475 -1.7988E-05 0.34199 0.00020186 0.31151 0.00018388 590.2696472409011 78.846 1.2609 75.17 74.816 76.077 -3.676 65 35 3 0 0 0 0.2219 2 14980 14980;14992 36.127 6.2864 1 7721500 55460 5862 36637 36658 54280;54281 54280 -0.0577175900725706 YSEDLSDMHY 10 Unmodified _YSEDLSDMHY_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.74951171875 2 630.247886 1258.48122 0.28894 0.0001821 -0.065027 -4.0983E-05 0.22391 0.00014112 630.2479255936681 88.7 0.84616 88.7 88.257 89.103 0 70 23 4 0 0 0 5.8335E-44 3 17334 17282;17334;17381 197.17 147.23 1 38757000 55461 5480 36638 36659 54282;54283;54284 54283 -0.13768316846812922 YSEDLSDMHY 10 Unmodified _YSEDLSDMHY_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7496337890625 2 630.247886 1258.48122 0.93858 0.00059154 -0.90251 -0.00056881 0.036067 2.2731E-05 630.2473827295399 92.932 0.90049 88.941 88.553 89.453 -3.9907 73 25 4 0 0 0 2.2384999999999998E-88 5 18202 18154;18166;18202;18247;18260 231.69 181.76 1 48505000 55462 5480 36638 36659 54285;54286;54287;54288;54289 54287 -0.13768316846812922 YSEDLSDMHY 10 Unmodified _YSEDLSDMHY_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7496337890625 2 630.247886 1258.48122 0.47944 0.00030216 -0.29922 -0.00018858 0.18022 0.00011358 630.2477969375642 93.033 0.92429 88.89 88.489 89.413 -4.1435 82 26 5 0 0 0 5.1513E-72 5 17734 17689;17734;17781;17793;17796 222.91 172.97 1 51274000 55463 5480 36638 36659 54290;54291;54292;54293;54294 54291 -0.13768316846812922 YSEDLSDMHY 10 Unmodified _YSEDLSDMHY_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7495727539062 2 630.247886 1258.48122 0.32199 0.00020294 -0.19037 -0.00011998 0.13162 8.2953E-05 630.2478589329788 92.747 0.85354 88.903 88.51 89.364 -3.844 91 24 5 0 0 0 5.1513E-72 3 17784 17737;17784;17831 222.91 172.97 1 48701000 55464 5480 36638 36659 54295;54296;54297 54296 -0.13768316846812922 YSEEECKQY 9 Unmodified _YSEEECKQY_ 0 0 0 nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1 nc|ENSG00000127955|P63096-2|GNAI1 nc|ENSG00000127955|P63096-2|GNAI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2642822265625 2 589.737154 1177.45975 0.37472 0.00022099 0.31417 0.00018528 0.68888 0.00040626 589.7370630777602 30.314 0.3546 30.314 30.13 30.485 0 15 9 2 0 0 0 0.0048421 3 5432 5421;5424;5432 114.2 59.428 1 1461100 55465 3500 36639 36660 54298;54299;54300 54300 -0.12187701875541279 YSEEECKQY 9 Unmodified _YSEEECKQY_ 0 0 0 nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1 nc|ENSG00000127955|P63096-2|GNAI1 nc|ENSG00000127955|P63096-2|GNAI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.253173828125 2 589.737154 1177.45975 0.54202 0.00031965 -0.39409 -0.00023241 0.14793 8.7241E-05 589.7368021680657 32.795 0.41912 30.565 30.366 30.785 -2.2305 27 11 3 0 0 0 0.029139 1 6013 6013 82.529 44.555 1 1785000 55466 3500 36639 36660 54301 54301 -0.12187701875541279 YSEEECKQY 9 Unmodified _YSEEECKQY_ 0 0 0 nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1 nc|ENSG00000127955|P63096-2|GNAI1 nc|ENSG00000127955|P63096-2|GNAI1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2587280273438 2 589.737154 1177.45975 0.44856 0.00026453 -0.39794 -0.00023468 0.050621 2.9853E-05 589.7370087173302 32.682 0.49206 30.534 30.35 30.842 -2.1483 28 13 3 0 0 0 0.21942 1 5692 5692 24.882 16.726 1 1509100 55467 3500 36639 36660 54302 54302 -0.12187701875541279 YSEEIVEMY 9 Oxidation (M) _YSEEIVEM(Oxidation (M))Y_ YSEEIVEM(1)Y YSEEIVEM(120)Y 0 0 1 ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2509765625 2 589.74973 1177.48491 0.13204 7.7868E-05 0.30131 0.0001777 0.43335 0.00025557 589.7497748965816 92.484 0.96684 92.484 92.092 93.059 0 69 27 3 0 0 0 0.0025997 4 18102 18051;18102;18117;18152 117.6 75.504 1 6335000 55468 1957 36640 36661 54303;54304;54305;54306 54304 17 -0.09673647072963831 YSEEIVEMY 9 Oxidation (M) _YSEEIVEM(Oxidation (M))Y_ YSEEIVEM(1)Y YSEEIVEM(120)Y 0 0 1 ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2516479492188 2 589.74973 1177.48491 0.47668 0.00028112 0.13309 7.8488E-05 0.60977 0.00035961 589.749740720837 97.303 0.9734 93.205 92.49 93.464 -4.0978 43 27 2 0 0 0 0.0025997 3 19005 19005;19059;19108 117.6 83.496 1 2754100 55469 1957 36640 36661 54307;54308;54309 54307 17 -0.09673647072963831 YSEEIVEMY 9 Oxidation (M) _YSEEIVEM(Oxidation (M))Y_ YSEEIVEM(1)Y YSEEIVEM(93)Y 0 0 1 ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2513427734375 2 589.74973 1177.48491 0.55399 0.00032672 0.4205 0.00024799 0.97449 0.00057471 589.7495685066465 97.177 0.88894 92.942 92.539 93.428 -4.2348 34 25 2 0 0 0 0.019538 1 18547 18547 92.822 72.369 1 2155400 55470 1957 36640 36661 54310 54310 17 -0.09673647072963831 YSEEIVEMY 9 Oxidation (M) _YSEEIVEM(Oxidation (M))Y_ YSEEIVEM(1)Y YSEEIVEM(100)Y 0 0 1 ENSG00000100345|ENST00000216181|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2506103515625 2 589.74973 1177.48491 -0.025159 -1.4838E-05 0.99177 0.0005849 0.96661 0.00057006 589.7499773658492 96.977 0.85561 93.058 92.577 93.433 -3.9194 44 24 2 0 0 0 0.0098628 3 18542 18542;18599;18644 104.8 72.369 1 2896900 55471 1957 36640 36661 54311;54312;54313 54311 17 -0.09673647072963831 YSEETLRARFY 11 Unmodified _YSEETLRARFY_ 0 0 0 nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-3|IMMT nc|ENSG00000132305|Q16891-2|IMMT nc|ENSG00000132305|Q16891-2|IMMT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7232666015625 3 478.905253 1433.69393 -0.25594 -0.00012257 0.37692 0.00018051 0.12097 5.7934E-05 478.9054331252351 91.86 0.66231 91.86 91.529 92.191 0 52 18 4 0 0 0 0.29359 1 17940 17940 53.798 30.782 1 8700500 55472 3714 36641 36662 54314 54314 -0.005570627246925142 YSEETLRARFY 11 Unmodified _YSEETLRARFY_ 0 0 0 nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-3|IMMT nc|ENSG00000132305|Q16891-2|IMMT nc|ENSG00000132305|Q16891-2|IMMT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7314453125 3 478.905253 1433.69393 0.057119 2.7355E-05 -0.058258 -2.79E-05 -0.0011392 -5.4555E-07 478.9052519647232 96.153 0.67944 92.104 91.754 92.433 -4.0496 66 19 4 0 0 0 0.38724 1 18883 18883 35.996 21.825 1 14869000 55473 3714 36641 36662 54315 54315 -0.005570627246925142 YSEETLRARFY 11 Unmodified _YSEETLRARFY_ 0 0 0 nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-3|IMMT nc|ENSG00000132305|Q16891-2|IMMT nc|ENSG00000132305|Q16891-2|IMMT MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.73291015625 3 478.905253 1433.69393 0.11449 5.4831E-05 0.0035235 1.6874E-06 0.11801 5.6518E-05 478.90523388636586 96.177 0.73332 91.942 91.57 92.303 -4.2348 65 20 4 0 0 0 0.18412 1 18329 18329 60.943 37.928 1 10897000 55474 3714 36641 36662 54316 54316 -0.005570627246925142 YSEFMNDMN 9 Unmodified _YSEFMNDMN_ 0 0 0 REV__ENST00000550170.5_1_12:53294858-53298765:-|nuORF REV__ENST00000550170.5_1_12:53294858-53298765:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3385009765625 2 575.712624 1149.4107 0.18889 0.00010874 0.32197 0.00018536 0.51086 0.00029411 575.7127963456662 61.161 1.109 57.921 57.581 58.69 -3.2395 85 31 4 0 0 0 0.31714 1 11510 11510 30.637 6.616 1 21397000 + + 55475 13512 36642 36663 54317 54317 -0.15803313436140343 YSEFVRRSVEY 11 Unmodified _YSEFVRRSVEY_ 0 0 0 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.73089599609375 3 478.905253 1433.69393 -0.16075 -7.6983E-05 -0.22339 -0.00010698 -0.38414 -0.00018397 479.23900885134225 71.691 0.57061 71.691 71.453 72.023 0 30 15 3 0 0 0 0.36112 2 13907 13907;13911 21.049 15.646 1 2643500 55476 6899 36643 36664 54318;54319 54318 -0.005570627246925142 YSEFVRRSVEY 11 Unmodified _YSEFVRRSVEY_ 0 0 0 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.74346923828125 3 478.905253 1433.69393 -0.04346 -2.0813E-05 -0.29399 -0.00014079 -0.33744 -0.0001616 478.9053456873478 75.447 0.79312 72.032 71.539 72.332 -3.4151 47 22 3 0 0 0 0.40737 1 14695 14695 36.955 22.784 1 5287700 55477 6899 36643 36664 54320 54320 -0.005570627246925142 YSEGESLFY 9 Unmodified _YSEGESLFY_ 0 0 0 VPS41|p.N388Ifs*15|2|0.3|ENSG00000006715|chr7:38771220-38771220|T/-|frameshift_variant;nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41 VPS41|p.N388Ifs*15|2|0.3|ENSG00000006715|chr7:38771220-38771220|T/-|frameshift_variant VPS41|p.N388Ifs*15|2|0.3|ENSG00000006715|chr7:38771220-38771220|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7728881835938 2 547.73748 1093.46041 0.18379 0.00010067 0.38934 0.00021326 0.57313 0.00031393 547.7376665124341 130.53 0.91534 125.9 125.44 126.35 -4.6359 52 25 3 0 0 0 0.11447 1 25710 25710 50.855 26.181 1 5042200 55478 1012 36644 36665 54321 54321 -0.0825853916419419 YSEGESLFY 9 Unmodified _YSEGESLFY_ 0 0 0 VPS41|p.N388Ifs*15|2|0.3|ENSG00000006715|chr7:38771220-38771220|T/-|frameshift_variant;nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41 VPS41|p.N388Ifs*15|2|0.3|ENSG00000006715|chr7:38771220-38771220|T/-|frameshift_variant VPS41|p.N388Ifs*15|2|0.3|ENSG00000006715|chr7:38771220-38771220|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7865600585938 2 547.73748 1093.46041 0.055527 3.0414E-05 0.50305 0.00027554 0.55858 0.00030596 547.7377344250926 130.58 0.80324 125.74 125.3 126.1 -4.8355 37 22 2 0 0 0 0.45972 1 25008 25008 10.899 10.826 1 4505500 55479 1012 36644 36665 54322 54322 -0.0825853916419419 YSEGESLFY 9 Unmodified _YSEGESLFY_ 0 0 0 VPS41|p.N388Ifs*15|2|0.3|ENSG00000006715|chr7:38771220-38771220|T/-|frameshift_variant;nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41 VPS41|p.N388Ifs*15|2|0.3|ENSG00000006715|chr7:38771220-38771220|T/-|frameshift_variant VPS41|p.N388Ifs*15|2|0.3|ENSG00000006715|chr7:38771220-38771220|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7750244140625 2 547.73748 1093.46041 0.25053 0.00013722 0.25507 0.00013971 0.5056 0.00027693 547.7375284975946 130.52 0.8652 125.75 125.28 126.15 -4.7725 56 24 3 0 0 0 0.052953 2 25108 25064;25108 81.552 74.075 1 6159500 55480 1012 36644 36665 54323;54324 54324 -0.0825853916419419 YSEGYPGKRYY 11 Unmodified _YSEGYPGKRYY_ 0 0 0 SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2 SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5220642089844 3 461.550698 1381.63027 0.52513 0.00024238 -0.092404 -4.2649E-05 0.43273 0.00019973 461.5505096949149 47.931 0.45741 47.931 47.716 48.174 0 21 12 2 0 0 0 0.67398 1 9029 9029 13.519 7.3268 1 924140 55481 6772 36645 36666 54325 54325 -0.04528423161741557 YSEKLKKL 8 Unmodified _YSEKLKKL_ 0 0 0 REV__nc|ENSG00000116030|P63165-2|SUMO1 REV__nc|ENSG00000116030|P63165-2|SUMO1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 337.2413635253906 3 336.874454 1007.60153 -0.28186 -9.495E-05 0.15288 5.1502E-05 -0.12897 -4.3448E-05 336.8744644383915 60.465 0.54832 57.532 57.204 57.752 -2.9333 26 15 2 0 0 0 0.85653 1 11598 11598 1.8442 0 1 809780 + 55482 15462 36646 36667 54326 54326 0.09803503999762597 YSESPDLEF 9 Unmodified _YSESPDLEF_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000489059.1_1_1:110577259-110580635:+|nuORF;nc|ENSG00000143093|Q5VSL9-4|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.76953125 2 543.734937 1085.45532 0.04603 2.5028E-05 -2.2295 -0.0012123 -2.1835 -0.0011872 543.7335583071109 84.199 0.84802 80.487 79.781 80.629 -3.7117 26 23 2 0 0 0 0.72864 1 16079 16079 16.942 2.3606 1 1006600 55483 4452 36647 36668 54327 54327 -0.08398843026816394 YSETTLTSY 9 Unmodified _YSETTLTSY_ 0 0 0 ENST00000501011.6_1_11:82784390-82784510:+|nuORF;ENST00000526795.1_1_11:82784390-82788120:+|nuORF ENST00000501011.6_1_11:82784390-82784510:+|nuORF ENST00000501011.6_1_11:82784390-82784510:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2611694335938 2 532.742762 1063.47097 0.50147 0.00026715 -0.12914 -6.88E-05 0.37233 0.00019835 532.7422871550622 80.084 1.1881 80.084 79.509 80.697 0 60 33 3 0 0 0 0.026587 1 15601 15601 85.357 62.208 1 7909900 55484 10619 36648 36669 54328 54328 -0.05822556509747301 YSETTLTSY 9 Unmodified _YSETTLTSY_ 0 0 0 ENST00000501011.6_1_11:82784390-82784510:+|nuORF;ENST00000526795.1_1_11:82784390-82788120:+|nuORF ENST00000501011.6_1_11:82784390-82784510:+|nuORF ENST00000501011.6_1_11:82784390-82784510:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 533.26171875 2 532.742762 1063.47097 0.043618 2.3237E-05 0.32404 0.00017263 0.36766 0.00019587 532.7427845634544 84.013 0.68253 80.406 80.049 80.731 -3.6079 46 19 3 0 0 0 0.095051 1 16448 16448 57.471 35.725 1 8845400 55485 10619 36648 36669 54329 54329 -0.05822556509747301 YSETTLTSY 9 Unmodified _YSETTLTSY_ 0 0 0 ENST00000501011.6_1_11:82784390-82784510:+|nuORF;ENST00000526795.1_1_11:82784390-82788120:+|nuORF ENST00000501011.6_1_11:82784390-82784510:+|nuORF ENST00000501011.6_1_11:82784390-82784510:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2830200195312 2 532.742762 1063.47097 0.55327 0.00029475 0.06374 3.3957E-05 0.61701 0.00032871 532.7425494133038 84.316 0.65932 80.407 80.074 80.734 -3.9093 42 18 3 0 0 0 0.36689 1 16010 16010 34.102 21.571 1 7729800 55486 10619 36648 36669 54330 54330 -0.05822556509747301 YSETTLTSY 9 Unmodified _YSETTLTSY_ 0 0 0 ENST00000501011.6_1_11:82784390-82784510:+|nuORF;ENST00000526795.1_1_11:82784390-82788120:+|nuORF ENST00000501011.6_1_11:82784390-82784510:+|nuORF ENST00000501011.6_1_11:82784390-82784510:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2828979492188 2 532.742762 1063.47097 0.015432 8.2212E-06 0.75753 0.00040357 0.77296 0.00041179 532.7428511333011 84.082 0.70548 80.371 80.061 80.767 -3.7117 50 19 3 0 0 0 0.65155 1 16023 16023 21.747 6.9084 1 8897500 55487 10619 36648 36669 54331 54331 -0.05822556509747301 YSEVKQIEK 9 Unmodified _YSEVKQIEK_ 0 0 0 ENSG00000126698|ENST00000263697|DNAJC8;ENST00000482674.5_1_1:28537058-28559509:-|nuORF;DNAJC8|p.Q140Tfs*15|1|0.4|ENSG00000126698|chr1:28208395-28208396|-/T|frameshift_variant ENSG00000126698|ENST00000263697|DNAJC8 ENSG00000126698|ENST00000263697|DNAJC8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.20440673828125 3 375.20464 1122.59209 NaN NaN NaN NaN NaN NaN NaN 25.172 1 23.638 23.138 24.138 -1.5342 0 0 0 0.23508 1 4126 4126 7.9454 0.90831 1 55488 3440 36649 36670 54332 54332 0.035696909235639396 YSFGEMPWDL 10 Unmodified _YSFGEMPWDL_ 0 0 0 ENST00000595601.1_1_19:17651040-17654446:+|nuORF;nc|ENSG00000167483|Q86XR2-6|NIBAN3;nc|ENSG00000167483|Q86XR2-5|NIBAN3;nc|ENSG00000167483|Q86XR2-7|NIBAN3;nc|ENSG00000167483|Q86XR2-4|NIBAN3;ENSG00000167483|ENST00000599164|NIBAN3;nc|ENSG00000167483|Q86XR2-3|NIBAN3;nc|ENSG00000167483|Q86XR2-2|NIBAN3;nc|ENSG00000167483|Q86XR2|NIBAN3 ENST00000595601.1_1_19:17651040-17654446:+|nuORF ENST00000595601.1_1_19:17651040-17654446:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.76806640625 2 622.768257 1243.52196 NaN NaN NaN NaN NaN NaN NaN 47.03 1 44.189 43.689 44.689 -2.8409 0 0 0 0.22588 1 8876 8876 5.7319 0 1 55489 5811 36650 36671 54333 54333 -0.09005930736543633 YSFLDLKYRWI 11 Unmodified _YSFLDLKYRWI_ 0 0 0 CEACAM18|p.H266R|1|0.09|ENSG00000213822|chr19:51483140-51483140|A/G|missense_variant CEACAM18|p.H266R|1|0.09|ENSG00000213822|chr19:51483140-51483140|A/G|missense_variant CEACAM18|p.H266R|1|0.09|ENSG00000213822|chr19:51483140-51483140|A/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 752.401123046875 2 752.403369 1502.79219 NaN NaN NaN NaN NaN NaN NaN 56.262 1 53.085 52.585 53.585 -3.1761 0 0 0 0.23698 1 10464 10464 1.3295 0.9789 1 55490 475 36651 36672 54334 54334 0.06090165591172081 YSFLIESG 8 Unmodified _YSFLIESG_ 0 0 0 REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant REV__APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.22564697265625 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 119.88 1 115.24 114.74 115.74 -4.645 0 0 0 0.2074 1 23007 23007 19.439 5.5329 1 + 55491 13085 36652 36673 54335 54335 -0.022092991220915792 YSFRVTKRIIW 11 Unmodified _YSFRVTKRIIW_ 0 0 0 REV__ENST00000428621.5_1_2:55407836-55408762:-|nuORF REV__ENST00000428621.5_1_2:55407836-55408762:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2646179199219 3 490.285628 1467.83505 NaN NaN NaN NaN NaN NaN NaN 71.795 1 68.484 67.984 68.984 -3.3107 0 0 0 0.22632 1 13985 13985 0.50596 0 1 + 55492 21594 36653 36674 54336 54336 0.11984980439297033 YSFWTNEEQ 9 Unmodified _YSFWTNEEQ_ 0 0 0 REV__nc|ENSG00000171302|Q8WVQ1-2|CANT1 REV__nc|ENSG00000171302|Q8WVQ1-2|CANT1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2828369140625 2 602.251286 1202.48802 0.27245 0.00016409 0.47001 0.00028306 0.74246 0.00044715 602.251535966866 61.591 0.62222 58.351 58.034 58.656 -3.2395 43 17 3 0 0 0 0.31728 1 11515 11515 4.7159 4.3077 1 6077300 + 55493 18218 36654 36675 54337 54337 -0.10512635903933187 YSGAYSCCYY 10 Unmodified _YSGAYSCCYY_ 0 0 0 REV__nc|ENSG00000211668|P01706|IGLV2-11 REV__nc|ENSG00000211668|P01706|IGLV2-11 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2518310546875 2 590.209718 1178.40488 NaN NaN NaN NaN NaN NaN NaN 106.57 1 102.31 101.81 102.81 -4.2638 0 0 0 0.22588 1 20978 20978 4.3292 0.38484 1 + 55494 24248 36655 36676 54338 54338 -0.17718411947817003 YSGEHSPK 8 Unmodified _YSGEHSPK_ 0 0 0 REV__ENSG00000168913|ENST00000399775|ENHO REV__ENSG00000168913|ENST00000399775|ENHO MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 302.025390625 3 302.143492 903.408646 NaN NaN NaN NaN NaN NaN NaN 31.513 1 29.487 28.987 29.987 -2.0264 0 0 0 0.21486 1 5443 5443 3.5965 1.9439 1 + 55495 18065 36656 36677 54339 54339 -0.046922380674232045 YSGGLDVY 8 Unmodified _YSGGLDVY_ 0 0 0 REV__nc|ENSG00000069535|P27338-2|MAOB REV__nc|ENSG00000069535|P27338-2|MAOB MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2155456542969 2 437.203076 872.391599 NaN NaN NaN NaN NaN NaN NaN 138.18 1 133.34 132.84 133.84 -4.84 0 0 0 0.21486 1 26627 26627 10.183 0.83596 1 + 55496 14242 36657 36678 54340 54340 -0.04970158673233982 YSGLRLPSS 9 Unmodified _YSGLRLPSS_ 0 0 0 REV__nc|ENSG00000156194|O14830-2|PPEF2 REV__nc|ENSG00000156194|O14830-2|PPEF2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2643127441406 2 490.263999 978.513445 0.37748 0.00018506 0.58669 0.00028763 0.96416 0.00047269 490.264405409272 102.73 0.90856 98.413 98.045 98.954 -4.3208 30 25 2 0 0 0 0.34815 1 19733 19733 0.96228 0.93299 1 1115300 + 55497 17250 36658 36679 54341 54341 0.023328834091330464 YSGPYGFF 8 Unmodified _YSGPYGFF_ 0 0 0 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 313.1318054199219 3 313.1412 936.401769 NaN NaN NaN NaN NaN NaN NaN 20.95 1 19.565 19.065 20.065 -1.3847 0 0 0 0.21486 1 3274 3274 0.45834 0 1 + 55498 25044 36659 36680 54342 54342 -0.06897550947985565 YSGPYGFF 8 Unmodified _YSGPYGFF_ 0 0 0 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1141662597656 3 313.1412 936.401769 NaN NaN NaN NaN NaN NaN NaN 31.078 1 28.94 28.44 29.44 -2.138 0 0 0 0.21486 1 5342 5342 0.45834 0 1 + 55499 25044 36659 36680 54343 54343 -0.06897550947985565 YSGPYGFF 8 Unmodified _YSGPYGFF_ 0 0 0 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1152648925781 3 313.1412 936.401769 NaN NaN NaN NaN NaN NaN NaN 32.682 1 30.534 30.034 31.034 -2.1483 0 0 0 0.21486 1 5671 5671 0.45834 0 1 + 55500 25044 36659 36680 54344 54344 -0.06897550947985565 YSGPYGFF 8 Unmodified _YSGPYGFF_ 0 0 0 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.11431884765625 3 313.1412 936.401769 NaN NaN NaN NaN NaN NaN NaN 41.769 1 39.163 38.663 39.663 -2.606 0 0 0 0.21486 1 7500 7500 1.8442 0 1 + 55501 25044 36659 36680 54345 54345 -0.06897550947985565 YSGPYGFF 8 Unmodified _YSGPYGFF_ 0 0 0 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1448059082031 3 313.1412 936.401769 NaN NaN NaN NaN NaN NaN NaN 46.77 1 43.904 43.404 44.404 -2.8666 0 0 0 0.21486 1 8521 8521 0.45834 0 1 + 55502 25044 36659 36680 54346 54346 -0.06897550947985565 YSGPYGFF 8 Unmodified _YSGPYGFF_ 0 0 0 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.15045166015625 3 313.1412 936.401769 NaN NaN NaN NaN NaN NaN NaN 76.049 1 72.415 71.915 72.915 -3.6337 0 0 0 0.21486 1 14469 14469 1.8442 0 1 + 55503 25044 36659 36680 54347 54347 -0.06897550947985565 YSGPYGFF 8 Unmodified _YSGPYGFF_ 0 0 0 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 313.1217041015625 3 313.1412 936.401769 NaN NaN NaN NaN NaN NaN NaN 112.15 1 107.88 107.38 108.38 -4.2725 0 0 0 0.21486 1 21594 21594 1.8442 0 1 + 55504 25044 36659 36680 54348 54348 -0.06897550947985565 YSGRRYKV 8 Unmodified _YSGRRYKV_ 0 0 0 ENST00000481948.1_1_16:88104968-88110264:+|nuORF ENST00000481948.1_1_16:88104968-88110264:+|nuORF ENST00000481948.1_1_16:88104968-88110264:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 343.14892578125 3 343.526047 1027.55631 0.3915 0.00013449 -0.51864 -0.00017817 -0.12714 -4.3677E-05 343.52578373486523 89.571 0.42396 85.527 85.31 85.734 -4.0443 15 11 2 0 0 0 1.0277 1 17094 17094 1.6526 0 1 395590 55505 10386 36660 36681 54349 54349 0.04363698257202486 YSGRRYKV 8 Unmodified _YSGRRYKV_ 0 0 0 ENST00000481948.1_1_16:88104968-88110264:+|nuORF ENST00000481948.1_1_16:88104968-88110264:+|nuORF ENST00000481948.1_1_16:88104968-88110264:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 343.526047 1027.55631 -0.35878 -0.00012325 0.21213 7.2873E-05 -0.14664 -5.0376E-05 343.5260895322043 89.454 0.42351 85.595 85.338 85.761 -3.8595 0.034084 0.00034572 NaN 1.6526 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 592240 55506 10386 36660 36681 0.04363698257202486 YSGSSYSRSSY 11 Unmodified _YSGSSYSRSSY_ 0 0 0 RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant;RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6 RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7671508789062 2 622.264924 1242.5153 0.91102 0.0005669 -1.5067 -0.00093758 -0.59569 -0.00037068 622.7672211493754 59.006 0.46417 56.095 55.784 56.248 -2.9105 24 12 3 0 0 0 0.59903 1 11298 11298 18.146 2.8979 1 1534300 55507 12868 36661 36682 54350 54350 -0.09626152363557594 YSGVSLCLSH 10 Unmodified _YSGVSLCLSH_ 0 0 0 REV__ENST00000407418.7_1_22:39261369-39261624:-|nuORF REV__ENST00000407418.7_1_22:39261369-39261624:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2742309570312 2 533.255317 1064.49608 0.37437 0.00019963 2.5654 0.001368 2.9398 0.0015677 534.2606412927951 81.434 1.083 77.595 77.013 78.096 -3.8392 113 30 5 0 0 0 0.40256 1 15364 15364 30.637 9.0996 1 11200000 + 55508 21393 36662 36683 54351 54351 -0.03358780188182209 YSHHSGLEY 9 Unmodified _YSHHSGLEY_ 0 0 0 nc|ENSG00000105971|P51636-3|CAV2;nc|ENSG00000105971|P51636-2|CAV2;ENSG00000105971|ENST00000222693|CAV2 nc|ENSG00000105971|P51636-3|CAV2 nc|ENSG00000105971|P51636-3|CAV2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7783813476562 2 546.740888 1091.46722 0.34535 0.00018882 -0.13468 -7.3632E-05 0.21068 0.00011519 546.7408853865174 32.499 1.3365 30.269 29.76 31.096 -2.2305 93 37 4 0 0 0 0.057505 1 5949 5949 68.081 33.978 1 26495000 55509 2354 36663 36684 54352 54352 -0.07485181492961601 YSHHSGLEY 9 Unmodified _YSHHSGLEY_ 0 0 0 nc|ENSG00000105971|P51636-3|CAV2;nc|ENSG00000105971|P51636-2|CAV2;ENSG00000105971|ENST00000222693|CAV2 nc|ENSG00000105971|P51636-3|CAV2 nc|ENSG00000105971|P51636-3|CAV2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.79150390625 2 546.740888 1091.46722 0.53087 0.00029025 -0.2675 -0.00014626 0.26336 0.00014399 546.7407817932093 32.399 1.0436 30.251 29.864 30.908 -2.1483 81 29 4 0 0 0 0.026664 1 5633 5633 85.272 51.17 1 27174000 55510 2354 36663 36684 54353 54353 -0.07485181492961601 YSHHSGLEY 9 Unmodified _YSHHSGLEY_ 0 0 0 nc|ENSG00000105971|P51636-3|CAV2;nc|ENSG00000105971|P51636-2|CAV2;ENSG00000105971|ENST00000222693|CAV2 nc|ENSG00000105971|P51636-3|CAV2 nc|ENSG00000105971|P51636-3|CAV2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 546.740888 1091.46722 0.36008 0.00019687 -0.042517 -2.3246E-05 0.31756 0.00017363 546.7409001147502 30.291 0.81171 30.291 29.849 30.66 0 0.020994 -2.8092E-06 NaN 85.272 68 22 4 NaN NaN NaN NaN 0 NaN NaN 0 29646000 55511 2354 36663 36684 -0.07485181492961601 YSHHSGLEY 9 Unmodified _YSHHSGLEY_ 0 0 0 nc|ENSG00000105971|P51636-3|CAV2;nc|ENSG00000105971|P51636-2|CAV2;ENSG00000105971|ENST00000222693|CAV2 nc|ENSG00000105971|P51636-3|CAV2 nc|ENSG00000105971|P51636-3|CAV2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 546.740888 1091.46722 0.28613 0.00015644 0.19948 0.00010906 0.48561 0.0002655 546.7409753853995 32.295 0.76904 30.268 29.94 30.709 -2.0264 -0.0013727 0.00026181 NaN 85.272 40 21 2 NaN NaN NaN NaN 0 NaN NaN 0 32696000 55512 2354 36663 36684 -0.07485181492961601 YSIFILLLL 9 Unmodified _YSIFILLLL_ 0 0 0 REV__ENSG00000179055|ENST00000641530|OR13D1 REV__ENSG00000179055|ENST00000641530|OR13D1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7853393554688 2 547.846636 1093.67872 NaN NaN NaN NaN NaN NaN NaN 58.208 1 55.003 54.503 55.503 -3.2052 0 0 0 0.23508 1 10859 10859 4.756 0 1 + 55513 18635 36664 36685 54354 54354 0.13562722216101974 YSILTLLR 8 Unmodified _YSILTLLR_ 0 0 0 ENST00000222690.10_1_7:44866953-44867181:-|nuORF ENST00000222690.10_1_7:44866953-44867181:-|nuORF ENST00000222690.10_1_7:44866953-44867181:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2673645019531 2 489.80276 977.590967 -0.60926 -0.00029842 0.82898 0.00040604 0.21972 0.00010762 489.80319597020633 23.796 0.41175 22.007 21.844 22.256 -1.7886 17 11 2 0 0 0 1.0249 1 3890 3890 5.7604 0 1 519460 55514 8136 36665 36686 54355 54355 0.10127521345339119 YSKGASIFKPY 11 Unmodified _YSKGASIFKPY_ 0 0 0 ENST00000569691.1_1_15:55710632-55710698:+|nuORF ENST00000569691.1_1_15:55710632-55710698:+|nuORF ENST00000569691.1_1_15:55710632-55710698:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7750244140625 2 630.834788 1259.65502 NaN NaN NaN NaN NaN NaN NaN 80.545 1 76.857 76.357 77.357 -3.6879 0 0 0 0.23634 1 15358 15358 3.2813 0 1 55515 11407 36666 36687 54356 54356 0.03558256711630747 YSKKKTLI 8 Unmodified _YSKKKTLI_ 0 0 0 REV__CON__Q29RQ1 REV__CON__Q29RQ1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2637634277344 2 490.810585 979.606617 0.32608 0.00016004 3.5667 0.0017506 3.8928 0.0019106 490.81286468426543 103.26 0.11195 98.909 98.854 98.966 -4.346 4 2 2 0 0 0 0.89147 1 19782 19782 0.0082765 0 1 473010 + + 55516 13536 36667 36688 54357 54357 0.11599807862387479 YSKKKTLI 8 Unmodified _YSKKKTLI_ 0 0 0 REV__CON__Q29RQ1 REV__CON__Q29RQ1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 490.810585 979.606617 0.039159 1.922E-05 4.0324 0.0019792 4.0716 0.0019984 490.81250446082134 102.94 0.73269 98.755 98.377 99.109 -4.1861 -0.039535 -5.1225E-05 NaN 0.0082765 41 20 3 NaN NaN NaN NaN 0 NaN NaN 0 3713900 + + 55517 13536 36667 36688 0.11599807862387479 YSKKLLLY 8 Unmodified _YSKKLLLY_ 0 0 0 tr|U7T3K3|U7T3K3_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00335PE=4SV=1 tr|U7T3K3|U7T3K3_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00335PE=4SV=1 tr|U7T3K3|U7T3K3_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00335PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 343.18511962890625 3 343.211066 1026.61137 NaN NaN NaN NaN NaN NaN NaN 135.6 1 130.77 130.27 131.27 -4.8307 0 0 0 0.21486 1 26108 26108 0.45834 0 1 55518 26408 36668 36689 54358 54358 0.09912692005150348 YSKKWILK 8 Unmodified _YSKKWILK_ 0 0 0 tr|U7SQ35|U7SQ35_FUSNUDUF374domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01674PE=4SV=1 tr|U7SQ35|U7SQ35_FUSNUDUF374domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01674PE=4SV=1 tr|U7SQ35|U7SQ35_FUSNUDUF374domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01674PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2783813476562 2 533.326402 1064.63825 NaN NaN NaN NaN NaN NaN NaN 150.48 1 145.36 144.86 145.86 -5.1204 0 0 0 0.2396 1 29163 29163 0.12286 0.11459 1 55519 26052 36669 36690 54359 54359 0.10851800616319451 YSLFICCCL 9 Unmodified _YSLFICCCL_ 0 0 0 ENST00000381844.8_1_2:9724735-9724870:-|nuORF ENST00000381844.8_1_2:9724735-9724870:-|nuORF ENST00000381844.8_1_2:9724735-9724870:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2765502929688 2 532.734317 1063.45408 0.70791 0.00037713 0.61669 0.00032853 1.3246 0.00070566 533.2343222166681 102.26 0.20534 97.939 97.804 98.01 -4.3208 8 5 2 0 0 0 0.60805 1 19564 19564 12.532 1.7076 1 906110 55520 9336 36670 36691 54360 54360 -0.07510795192570185 YSLGLRLCRP 10 Unmodified _YSLGLRLCRP_ 0 0 0 nc|ENSG00000007541|Q9BRB3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;ENST00000480424.6_1_16:630665-633032:+|nuORF nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3|PIGQ MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 393.2909851074219 3 393.221859 1176.64375 -0.17769 -6.987E-05 0.34744 0.00013662 0.16976 6.6752E-05 393.2218941454252 99.861 0.3149 95.728 95.581 95.896 -4.1326 12 8 2 0 0 0 0.91149 1 19632 19632 3.3196 1.99 1 1292900 55521 1027 36671 36692 54361 54361 0.0624915613648227 YSLGLRLCRP 10 Unmodified _YSLGLRLCRP_ 0 0 0 nc|ENSG00000007541|Q9BRB3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;ENST00000480424.6_1_16:630665-633032:+|nuORF nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3|PIGQ MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 393.221859 1176.64375 0.24535 9.6476E-05 -0.27754 -0.00010913 -0.032191 -1.2658E-05 393.5561041519914 99.892 0.26709 95.595 95.515 95.782 -4.297 -0.066493 -0.0004756 NaN 3.3196 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 674690 55522 1027 36671 36692 0.0624915613648227 YSLKNKDVK 9 Unmodified _YSLKNKDVK_ 0 0 0 ENSG00000172464|ENST00000544374|OR5AP2 ENSG00000172464|ENST00000544374|OR5AP2 ENSG00000172464|ENST00000544374|OR5AP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7724609375 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 58.713 1 58.713 58.213 59.213 0 0 0 0 0.19665 1 11241 11241 0.12781 0.0049496 1 55523 6224 36672 36693 54362 54362 0.07009701023071102 YSLKSAAYIA 10 Unmodified _YSLKSAAYIA_ 0 0 0 REV__nc|ENSG00000105339|A2RUS2-2|DENND3 REV__nc|ENSG00000105339|A2RUS2-2|DENND3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7925415039062 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 135.05 1 130.41 129.91 130.91 -4.6399 0 0 0 0.22552 1 26636 26636 18.146 5.6148 1 + 55524 14979 36673 36694 54363 54363 0.036346097574551095 YSLLILLFP 9 Unmodified _YSLLILLFP_ 0 0 0 REV__ENSG00000170683|ENST00000642047|OR10A3 REV__ENSG00000170683|ENST00000642047|OR10A3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2137451171875 3 360.223083 1077.64742 NaN NaN NaN NaN NaN NaN NaN 35.569 1 33.175 32.675 33.675 -2.3938 0 0 0 0.19512 1 6554 6554 12.241 0 1 + 55525 18175 36674 36695 54364 54364 0.11170149181998568 YSLLILVVF 9 Unmodified _YSLLILVVF_ 0 0 0 ENSG00000203730|ENST00000367565|TEDDM1 ENSG00000203730|ENST00000367565|TEDDM1 ENSG00000203730|ENST00000367565|TEDDM1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.268310546875 2 533.830986 1065.64742 -0.012083 -6.4503E-06 2.0782 0.0011094 2.0661 0.0011029 533.8319252699674 79.184 0.49737 75.508 75.267 75.764 -3.676 22 13 2 0 0 0 0.58066 1 15063 15063 0.12781 0.054551 1 881060 55526 7543 36675 36696 54365 54365 0.11722149181991881 YSLLLLPLY 9 Unmodified _YSLLLLPLY_ 0 0 0 REV__ENST00000514870.1_3_4:106068953-106111627:+|nuORF REV__ENST00000514870.1_3_4:106068953-106111627:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7708740234375 2 547.828443 1093.64233 NaN NaN NaN NaN NaN NaN NaN 69.407 1 66.017 65.517 66.517 -3.3903 0 0 0 0.23508 1 13125 13125 5.2307 0.47466 1 + 55527 20435 36676 36697 54366 54366 0.09925845319389737 YSLLLTLYL 9 Unmodified _YSLLLTLYL_ 0 0 0 REV__ENST00000467779.1_1_7:32620375-32623516:+|nuORF REV__ENST00000467779.1_1_7:32620375-32623516:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 549.8464965820312 2 549.825901 1097.63725 NaN NaN NaN NaN NaN NaN NaN 10.605 1 9.7012 9.2012 10.201 -0.90401 0 0 0 0.23508 1 1341 1341 0 0 1 + 55528 21987 36677 36698 54367 54367 0.09233541456728744 YSLLVKLSY 9 Unmodified _YSLLVKLSY_ 0 0 0 REV__nc|ENSG00000110090|P50416-2|CPT1A REV__nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.79345703125 2 543.3157 1084.61685 0.12112 6.5804E-05 -0.27872 -0.00015143 -0.1576 -8.5626E-05 543.315570979995 49.098 0.35088 46.217 46.098 46.449 -2.8811 16 9 2 0 0 0 0.67531 1 9328 9328 7.9102 0 1 1048100 + 55529 15192 36678 36699 54368 54368 0.07792370796960313 YSLLVKLSY 9 Unmodified _YSLLVKLSY_ 0 0 0 REV__nc|ENSG00000110090|P50416-2|CPT1A REV__nc|ENSG00000110090|P50416-2|CPT1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 543.3157 1084.61685 0.65799 0.0003575 -0.70667 -0.00038394 -0.048672 -2.6444E-05 543.3152028027242 45.951 0.34701 45.951 45.656 46.003 0 -0.13294 -0.00020754 NaN 7.9102 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 925920 + 55530 15192 36678 36699 0.07792370796960313 YSLLVKLSY 9 Unmodified _YSLLVKLSY_ 0 0 0 REV__nc|ENSG00000110090|P50416-2|CPT1A REV__nc|ENSG00000110090|P50416-2|CPT1A MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 543.3157 1084.61685 0.12112 6.5804E-05 -0.27872 -0.00015143 -0.1576 -8.5626E-05 543.315570979995 49.098 0.35088 46.217 46.098 46.449 -2.8811 0.13294 0.00025748 NaN 7.9102 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1048100 + 55531 15192 36678 36699 0.07792370796960313 YSLNGGTHL 9 Unmodified _YSLNGGTHL_ 0 0 0 REV__ENST00000556771.5_1_14:64909035-64911499:+|nuORF REV__ENST00000556771.5_1_14:64909035-64911499:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.2427062988281 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 69.616 1 66.06 65.56 66.56 -3.5559 0 0 0 0.19698 1 13108 13108 2.6312 0 1 + 55532 23005 36679 36700 54369 54369 -0.015319761420073519 YSLNTYRPG 9 Unmodified _YSLNTYRPG_ 0 0 0 REV__ENSG00000100030|ENST00000215832|MAPK1 REV__ENSG00000100030|ENST00000215832|MAPK1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 357.07269287109375 3 357.513696 1069.51926 -0.31365 -0.00011213 -2.1756 -0.0007778 -2.4892 -0.00088993 357.51305773999496 18.202 0.1759 18.202 18.09 18.266 0 5 4 2 0 0 0 0.8825 1 2909 2909 1.0715 0.61312 1 337050 + 55533 14657 36680 36701 54370 54370 -0.012720180792030078 YSLNTYRPG 9 Unmodified _YSLNTYRPG_ 0 0 0 REV__ENSG00000100030|ENST00000215832|MAPK1 REV__ENSG00000100030|ENST00000215832|MAPK1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 357.55572509765625 3 357.513696 1069.51926 NaN NaN NaN NaN NaN NaN NaN 18.941 1 17.616 17.116 18.116 -1.3251 0 0 0 0.23508 1 2863 2863 5.2969 1.9772 1 + 55534 14657 36680 36701 54371 54371 -0.012720180792030078 YSLQRFRP 8 Unmodified _YSLQRFRP_ 0 0 0 LGI4|p.L516Pfs*7|1|0.48|ENSG00000153902|chr19:35125262-35125263|-/A|frameshift_variant;ENSG00000153902|ENST00000310123|LGI4 LGI4|p.L516Pfs*7|1|0.48|ENSG00000153902|chr19:35125262-35125263|-/A|frameshift_variant LGI4|p.L516Pfs*7|1|0.48|ENSG00000153902|chr19:35125262-35125263|-/A|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2825927734375 2 533.793258 1065.57196 -0.067223 -3.5883E-05 -1.071 -0.00057168 -1.1382 -0.00060756 533.7926219631033 82.565 0.41914 78.867 78.587 79.006 -3.6985 18 11 2 0 0 0 0.97173 1 15723 15723 18.135 0 1 607840 55535 4985 36681 36702 54372 54372 0.04179984774282275 YSLRDYVQ 8 Unmodified _YSLRDYVQ_ 0 0 0 SNX13|p.F110Y|1|0.15|ENSG00000071189|chr7:17890474-17890474|A/T|missense_variant SNX13|p.F110Y|1|0.15|ENSG00000071189|chr7:17890474-17890474|A/T|missense_variant SNX13|p.F110Y|1|0.15|ENSG00000071189|chr7:17890474-17890474|A/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2642822265625 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 84.857 1 81.193 80.693 81.693 -3.6641 0 0 0 0.085245 1 16586 16586 3.5871 0.95582 1 55536 25705 36682 36703 54373 54373 -0.011194204534831442 YSLRIDLAQ 9 Unmodified _YSLRIDLAQ_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 360.2016296386719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 73.47 1 69.876 69.376 70.376 -3.594 0 0 0 0.23508 1 13946 13946 6.6304 0.89852 1 + 55537 14076 36683 36704 54374 54374 0.046171279889904326 YSLSMKSL 8 Unmodified _YSLSMKSL_ 0 0 0 REV__ENST00000369046.8_1_6:107077528-107088354:+|nuORF REV__ENST00000369046.8_1_6:107077528-107088354:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 310.1648864746094 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 123.03 1 118.44 117.94 118.94 -4.5926 0 0 0 0.2386 1 23683 23683 0.12286 0 1 + 55538 20952 36684 36705 54375 54375 0.00691620414204408 YSLTLYGL 8 Unmodified _YSLTLYGL_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;ENST00000507684.1_1_6:31978569-31980175:-|nuORF;nc|ENSG00000248290|Q16473|TNXA;nc|ENSG00000168477|P22105-2|TNXB nc|ENSG00000168477|P22105-1|TNXB nc|ENSG00000168477|P22105-1|TNXB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.25335693359375 2 465.252569 928.490584 NaN NaN NaN NaN NaN NaN NaN 92.617 1 92.617 92.117 93.117 0 0 0 0 0.21486 1 18110 18110 6.3541 0 1 55539 5911 36685 36706 54376 54376 0.023478642916757053 YSLTLYGL 8 Unmodified _YSLTLYGL_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;ENST00000507684.1_1_6:31978569-31980175:-|nuORF;nc|ENSG00000248290|Q16473|TNXA;nc|ENSG00000168477|P22105-2|TNXB nc|ENSG00000168477|P22105-1|TNXB nc|ENSG00000168477|P22105-1|TNXB MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 465.2536926269531 2 465.252569 928.490584 NaN NaN NaN NaN NaN NaN NaN 93.077 1 93.077 92.577 93.577 0 0 0 0 0.22676 1 18205 18205 2.643 0.90076 1 55540 5911 36685 36706 54377 54377 0.023478642916757053 YSLTLYGL 8 Unmodified _YSLTLYGL_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;ENST00000507684.1_1_6:31978569-31980175:-|nuORF;nc|ENSG00000248290|Q16473|TNXA;nc|ENSG00000168477|P22105-2|TNXB nc|ENSG00000168477|P22105-1|TNXB nc|ENSG00000168477|P22105-1|TNXB MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2541198730469 2 465.252569 928.490584 NaN NaN NaN NaN NaN NaN NaN 96.601 1 92.366 91.866 92.866 -4.2348 0 0 0 0.23294 1 18445 18445 1.7423 0 1 55541 5911 36685 36706 54378 54378 0.023478642916757053 YSLWRYYEVY 10 Unmodified _YSLWRYYEVY_ 0 0 0 REV__ENSG00000141540|ENST00000269346|TTYH2 REV__ENSG00000141540|ENST00000269346|TTYH2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.23126220703125 3 481.231077 1440.6714 NaN NaN NaN NaN NaN NaN NaN 4.6892 1 3.6803 3.1803 4.1803 -1.0089 0 0 0 0.22588 1 117 117 0.15932 0.064481 1 + 55542 16638 36686 36707 54379 54379 -0.03130662122271133 YSMKNHDNSLY 11 Unmodified _YSMKNHDNSLY_ 0 0 0 ENST00000245458.10_1_14:50050312-50050384:-|nuORF ENST00000245458.10_1_14:50050312-50050384:-|nuORF ENST00000245458.10_1_14:50050312-50050384:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 458.2211608886719 3 457.871443 1370.5925 0.62293 0.00028522 -1.2325 -0.00056434 -0.60959 -0.00027911 457.8709900771319 47.062 0.46201 47.062 46.764 47.226 0 29 12 3 0 0 0 0.64428 1 8854 8854 15.538 6.2947 1 2911100 55543 8205 36687 36708 54380 54380 -0.07797257418860681 YSMKNHDNSLY 11 Unmodified _YSMKNHDNSLY_ 0 0 0 ENST00000245458.10_1_14:50050312-50050384:-|nuORF ENST00000245458.10_1_14:50050312-50050384:-|nuORF ENST00000245458.10_1_14:50050312-50050384:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 458.2243957519531 3 457.871443 1370.5925 -0.22767 -0.00010424 -0.39159 -0.0001793 -0.61925 -0.00028354 457.8714562459658 50.167 0.59669 47.286 46.976 47.572 -2.8811 46 16 4 0 0 0 0.71797 1 9546 9546 10.527 0.21224 1 5207900 55544 8205 36687 36708 54381 54381 -0.07797257418860681 YSMKNHDNSLY 11 Unmodified _YSMKNHDNSLY_ 0 0 0 ENST00000245458.10_1_14:50050312-50050384:-|nuORF ENST00000245458.10_1_14:50050312-50050384:-|nuORF ENST00000245458.10_1_14:50050312-50050384:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.23583984375 3 457.871443 1370.5925 -0.015131 -6.928E-06 -0.2637 -0.00012074 -0.27883 -0.00012767 457.8713468437308 50.302 0.5024 47.257 46.992 47.494 -3.0453 39 14 3 0 0 0 0.87901 1 9235 9235 18.34 5.4838 1 4740000 55545 8205 36687 36708 54382 54382 -0.07797257418860681 YSNDALYD 8 Unmodified _YSNDALYD_ 0 0 0 REV__EEF1B2|p.K22N|1|0.18|ENSG00000114942|chr2:206160045-206160045|G/T|missense_variant REV__EEF1B2|p.K22N|1|0.18|ENSG00000114942|chr2:206160045-206160045|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.2352600097656 2 480.700897 959.387241 -0.33064 -0.00015894 0.80401 0.00038649 0.47336 0.00022755 480.70110844592966 62.43 0.77246 62.43 62.173 62.945 0 48 21 3 0 0 0 0.74718 1 12033 12033 12.532 0.89125 1 5842000 + 55546 13780 36688 36709 54383 54383 -0.09407667886807758 YSNDALYD 8 Unmodified _YSNDALYD_ 0 0 0 REV__EEF1B2|p.K22N|1|0.18|ENSG00000114942|chr2:206160045-206160045|G/T|missense_variant REV__EEF1B2|p.K22N|1|0.18|ENSG00000114942|chr2:206160045-206160045|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 481.24517822265625 2 480.700897 959.387241 0.28268 0.00013588 -0.021259 -1.0219E-05 0.26142 0.00012566 480.70075611171967 66.371 0.73138 62.875 62.453 63.184 -3.4965 48 20 3 0 0 0 0.47546 1 12409 12409 44.407 10.305 1 5866200 + 55547 13780 36688 36709 54384 54384 -0.09407667886807758 YSNDALYD 8 Unmodified _YSNDALYD_ 0 0 0 REV__EEF1B2|p.K22N|1|0.18|ENSG00000114942|chr2:206160045-206160045|G/T|missense_variant REV__EEF1B2|p.K22N|1|0.18|ENSG00000114942|chr2:206160045-206160045|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2534484863281 2 480.700897 959.387241 0.25813 0.00012408 0.068091 3.2731E-05 0.32622 0.00015681 480.7007644793842 65.98 0.91302 62.697 62.333 63.246 -3.2832 56 25 3 0 0 0 0.47546 1 12455 12455 44.407 10.005 1 7409400 + 55548 13780 36688 36709 54385 54385 -0.09407667886807758 YSNEQQLCPY 10 Unmodified _YSNEQQLCPY_ 0 0 0 nc|ENSG00000075975|Q9H000-2|MKRN2;ENSG00000075975|ENST00000170447|MKRN2 nc|ENSG00000075975|Q9H000-2|MKRN2 nc|ENSG00000075975|Q9H000-2|MKRN2 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.768310546875 2 622.766245 1243.51794 NaN NaN NaN NaN NaN NaN NaN 34.578 1 32.26 31.76 32.76 -2.3175 0 0 0 0.22588 1 6351 6351 6.2058 1.4498 1 55549 1531 36689 36710 54386 54386 -0.09408020230262082 YSNERTYIRE 10 Unmodified _YSNERTYIRE_ 0 0 0 REV__ENSG00000196109|ENST00000397121|ZNF676 REV__ENSG00000196109|ENST00000397121|ZNF676 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 666.1717529296875 2 665.822941 1329.63133 0.29664 0.00019751 0.012408 8.2617E-06 0.30905 0.00020577 665.8228374987208 54.866 0.60022 51.731 51.427 52.028 -3.1352 45 16 4 0 0 0 0.74842 1 10090 10090 6.2058 0.47393 1 43532000 + 55550 19215 36690 36711 54387 54387 -0.020302087928939727 YSNERTYIRE 10 Unmodified _YSNERTYIRE_ 0 0 0 REV__ENSG00000196109|ENST00000397121|ZNF676 REV__ENSG00000196109|ENST00000397121|ZNF676 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 665.822941 1329.63133 0.53921 0.00035902 -0.25655 -0.00017081 0.28266 0.0001882 665.822740643027 51.437 0.6613 51.437 51.058 51.719 0 -0.20778 -0.00014365 NaN 6.2058 55 18 4 NaN NaN NaN NaN 0 NaN NaN 0 55512000 + 55551 19215 36690 36711 -0.020302087928939727 YSNERTYIRE 10 Unmodified _YSNERTYIRE_ 0 0 0 REV__ENSG00000196109|ENST00000397121|ZNF676 REV__ENSG00000196109|ENST00000397121|ZNF676 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 665.822941 1329.63133 0.6303 0.00041967 -0.33898 -0.0002257 0.29131 0.00019396 665.8226676793245 54.563 0.68224 51.679 51.324 52.007 -2.8837 0.034793 -0.00025343 NaN 6.2058 57 19 4 NaN NaN NaN NaN 0 NaN NaN 0 56963000 + 55552 19215 36690 36711 -0.020302087928939727 YSNERTYIRE 10 Unmodified _YSNERTYIRE_ 0 0 0 REV__ENSG00000196109|ENST00000397121|ZNF676 REV__ENSG00000196109|ENST00000397121|ZNF676 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 665.822941 1329.63133 0.19511 0.00012991 -0.049759 -3.3131E-05 0.14535 9.6775E-05 665.8228673186038 54.869 0.66051 51.731 51.415 52.075 -3.1377 0.086476 0.00013171 NaN 6.2058 47 18 3 NaN NaN NaN NaN 0 NaN NaN 0 30581000 + 55553 19215 36690 36711 -0.020302087928939727 YSNFCRQE 8 Unmodified _YSNFCRQE_ 0 0 0 REV__ENST00000527969.1_1_11:65637109-65637745:-|nuORF REV__ENST00000527969.1_1_11:65637109-65637745:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6856689453125 2 523.721641 1045.42873 -0.55454 -0.00029043 0.29666 0.00015537 -0.25789 -0.00013506 523.7217842818558 112.65 0.66203 108.13 107.66 108.32 -4.5259 31 18 2 0 0 0 0.74398 1 21657 21657 7.9102 3.1541 1 1707100 + 55554 18298 36691 36712 54388 54388 -0.0921681039910709 YSPDSLMKY 9 Unmodified _YSPDSLMKY_ 0 0 0 ENST00000527145.1_1_11:44071584-44081467:+|nuORF;ENSG00000205126|ENST00000378832|ACCSL ENST00000527145.1_1_11:44071584-44081467:+|nuORF ENST00000527145.1_1_11:44071584-44081467:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 551.734130859375 2 552.257525 1102.5005 0.20625 0.0001139 -2.1735 -0.0012004 -1.9673 -0.0010864 552.757389988021 160.24 0.10486 155.01 154.94 155.05 -5.2299 4 2 2 0 0 0 0.87511 1 31107 31107 3.9444 0 1 1139000 55555 7631 36692 36713 54389 54389 -0.046653157652599475 YSPPIQRRY 9 Unmodified _YSPPIQRRY_ 0 0 0 SRRM1|p.P620Lfs*114|1|0.34|ENSG00000133226|chr1:24669238-24669238|C/-|frameshift_variant;nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1 SRRM1|p.P620Lfs*114|1|0.34|ENSG00000133226|chr1:24669238-24669238|C/-|frameshift_variant SRRM1|p.P620Lfs*114|1|0.34|ENSG00000133226|chr1:24669238-24669238|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2713012695312 2 590.317097 1178.61964 NaN NaN NaN NaN NaN NaN NaN 89.552 1 89.552 89.052 90.052 0 0 0 0 0.23508 1 17490 17490 7.9102 0 1 55556 3791 36693 36714 54390 54390 0.0374763897448247 YSPSSLLY 8 Unmodified _YSPSSLLY_ 0 0 0 REV__LILRB5|p.T446Rfs*16|1|0.4|ENSG00000105609|chr19:54254040-54254040|G/-|frameshift_variant REV__LILRB5|p.T446Rfs*16|1|0.4|ENSG00000105609|chr19:54254040-54254040|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.24786376953125 2 465.234376 928.454199 0.36331 0.00016902 3.0162 0.0014032 3.3795 0.0015723 465.2366503319144 21.161 0.52382 19.687 19.456 19.98 -1.4742 23 14 2 0 0 0 0.76728 1 3616 3616 5.7604 0 1 516130 + 55557 15004 36694 36715 54391 54391 -0.012890126050365325 YSPSWPNFDY 10 Unmodified _YSPSWPNFDY_ 0 0 0 ENSG00000138600|ENST00000261854|SPPL2A ENSG00000138600|ENST00000261854|SPPL2A ENSG00000138600|ENST00000261854|SPPL2A MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 425.2513122558594 3 425.848744 1274.5244 0.04457 1.898E-05 0.25494 0.00010857 0.29951 0.00012755 425.8487864870344 66.3 0.63257 63.017 62.684 63.317 -3.2832 28 17 2 0 0 0 1.1344 1 12428 12428 0.69767 0 1 2667500 55558 4183 36695 36716 54392 54392 -0.10187759007226305 YSQDYQQFY 9 Unmodified _YSQDYQQFY_ 0 0 0 RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant;ENSG00000003756|ENST00000347869|RBM5;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENST00000441812.6_1_3:50144918-50150831:+|nuORF RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7637939453125 2 621.259111 1240.50367 0.38273 0.00023777 -0.14589 -9.0635E-05 0.23684 0.00014714 621.2589633730644 96.791 0.9756 96.791 96.354 97.329 0 80 27 4 0 0 0 0.25976 2 18944 18944;18986 29.419 25.832 1 21291000 55559 970 36696 36717 54393;54394 54393 -0.10696349386898873 YSQDYQQFY 9 Unmodified _YSQDYQQFY_ 0 0 0 RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant;ENSG00000003756|ENST00000347869|RBM5;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENST00000441812.6_1_3:50144918-50150831:+|nuORF RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7788696289062 2 621.259111 1240.50367 0.99018 0.00061516 -0.72177 -0.00044841 0.2684 0.00016675 621.2586034786146 101.7 0.99968 97.525 97.074 98.074 -4.1738 89 28 4 0 0 0 0.15274 2 20000 20000;20017 43.772 12.865 1 28178000 55560 970 36696 36717 54395;54396 54395 -0.10696349386898873 YSQDYQQFY 9 Unmodified _YSQDYQQFY_ 0 0 0 RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant;ENSG00000003756|ENST00000347869|RBM5;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENST00000441812.6_1_3:50144918-50150831:+|nuORF RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7638549804688 2 621.259111 1240.50367 0.57096 0.00035471 -0.22038 -0.00013692 0.35058 0.0002178 621.2589081749229 101.77 1.0911 97.451 96.989 98.08 -4.3208 96 31 4 0 0 0 0.10573 5 19469 19466;19469;19497;19515;19517 53.833 40.145 1 26100000 55561 970 36696 36717 54397;54398;54399;54400;54401 54398 -0.10696349386898873 YSQDYQQFY 9 Unmodified _YSQDYQQFY_ 0 0 0 RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant;ENSG00000003756|ENST00000347869|RBM5;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENST00000441812.6_1_3:50144918-50150831:+|nuORF RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7625122070312 2 621.259111 1240.50367 0.60511 0.00037593 -0.29294 -0.00018199 0.31217 0.00019394 621.2588681707607 101.31 1.0094 97.323 96.925 97.934 -3.9895 97 28 5 0 0 0 0.42844 2 19519 19515;19519 24.021 15.865 1 22300000 55562 970 36696 36717 54402;54403 54403 -0.10696349386898873 YSQIYFIFY 9 Unmodified _YSQIYFIFY_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant;RALGAPA2|p.F549Lfs*4|1|0.36|ENSG00000188559|chr20:20616084-20616084|A/-|frameshift_variant;RALGAPA2|p.Y614Ffs*14|1|0.08|ENSG00000188559|chr20:20605372-20605373|-/GAACAAAAGGAAAAGA|frameshift_variant;RALGAPA2|p.S919Afs*24|1|0.29|ENSG00000188559|chr20:20573022-20573022|C/-|frameshift_variant;RALGAPA2|p.Y1040Tfs*3|1|0.35|ENSG00000188559|chr20:20571496-20571496|A/-|frameshift_variant;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7567138671875 2 622.305332 1242.59611 NaN NaN NaN NaN NaN NaN NaN 126.76 1 122.06 121.56 122.56 -4.6998 0 0 0 0.23508 1 24384 24384 7.9102 1.187 1 55563 7178;12859 36697 36718 54404 54404 -0.015482195827189571 YSQPLSVL 8 Unmodified _YSQPLSVL_ 0 0 0 nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3 nc|ENSG00000135336|Q9UBD5-3|ORC3 nc|ENSG00000135336|Q9UBD5-3|ORC3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 453.7511291503906 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 125.75 1 125.75 125.25 126.25 0 0 0 0 0.21486 1 24807 24807 8.5933 0 1 55564 3918 36698 36719 54405 54405 0.029309801489034726 YSRANLAY 8 Unmodified _YSRANLAY_ 0 0 0 REV__TNNI3K|p.E768K|1|0.65|ENSG00000116783|chr1:74492217-74492217|G/A|missense_variant REV__TNNI3K|p.E768K|1|0.65|ENSG00000116783|chr1:74492217-74492217|G/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 478.7218017578125 2 479.243067 956.47158 0.1283 6.1487E-05 0.044965 2.1549E-05 0.17327 8.3037E-05 479.2428509089462 62.155 0.49792 58.786 58.462 58.96 -3.3694 21 13 2 0 0 0 0.9383 1 11568 11568 25.399 1.3787 1 1054100 + 55565 15499 36699 36720 54406 54406 -0.00839672279403203 YSRANLAY 8 Unmodified _YSRANLAY_ 0 0 0 REV__TNNI3K|p.E768K|1|0.65|ENSG00000116783|chr1:74492217-74492217|G/A|missense_variant REV__TNNI3K|p.E768K|1|0.65|ENSG00000116783|chr1:74492217-74492217|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 479.243067 956.47158 -0.35553 -0.00017039 0.90778 0.00043505 0.55225 0.00026466 479.2433477647184 58.505 0.34733 58.505 58.409 58.757 0 -0.14899 0.0004919 NaN 25.399 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1272200 + 55566 15499 36699 36720 -0.00839672279403203 YSRANLAY 8 Unmodified _YSRANLAY_ 0 0 0 REV__TNNI3K|p.E768K|1|0.65|ENSG00000116783|chr1:74492217-74492217|G/A|missense_variant REV__TNNI3K|p.E768K|1|0.65|ENSG00000116783|chr1:74492217-74492217|G/A|missense_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 479.243067 956.47158 0.18592 8.91E-05 0.27956 0.00013398 0.46548 0.00022308 479.24303685006004 61.912 0.40981 58.672 58.484 58.894 -3.2395 0.017759 -0.00011024 NaN 25.399 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1113500 + 55567 15499 36699 36720 -0.00839672279403203 YSRDEAEFY 9 Unmodified _YSRDEAEFY_ 0 0 0 ENST00000478069.1_1_4:95290987-95291311:+|nuORF ENST00000478069.1_1_4:95290987-95291311:+|nuORF ENST00000478069.1_1_4:95290987-95291311:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.2492065429688 2 590.251286 1178.48802 NaN NaN NaN NaN NaN NaN NaN 95.876 1 91.826 91.326 92.326 -4.0496 0 0 0 0.23508 1 18795 18795 8.5933 2.3875 1 55568 10310 36700 36721 54407 54407 -0.0940863590394656 YSRDEAEFY 9 Unmodified _YSRDEAEFY_ 0 0 0 ENST00000478069.1_1_4:95290987-95291311:+|nuORF ENST00000478069.1_1_4:95290987-95291311:+|nuORF ENST00000478069.1_1_4:95290987-95291311:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2510986328125 2 590.251286 1178.48802 NaN NaN NaN NaN NaN NaN NaN 32.445 1 30.418 29.918 30.918 -2.0264 0 0 0 0.23508 1 5629 5629 8.5933 0 1 55569 10310 36700 36721 54408 54408 -0.0940863590394656 YSRDQIYV 8 Unmodified _YSRDQIYV_ 0 0 0 MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;ENSG00000095777|ENST00000642920|MYO3A;MYO3A|p.N727Kfs*9|1|0.22|ENSG00000095777|chr10:26128448-26128449|-/A|frameshift_variant;MYO3A|p.H990Ifs*9|1|0.26|ENSG00000095777|chr10:26157482-26157482|C/-|frameshift_variant;MYO3A|p.N525Kfs*14|1|0.39|ENSG00000095777|chr10:26096385-26096386|-/A|frameshift_variant MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant MYO3A|p.M1192*|5|0.25|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2612915039062 2 522.261456 1042.50836 -0.2771 -0.00014472 0.38864 0.00020297 0.11154 5.8253E-05 522.2616270175325 59.112 0.42505 56.201 55.893 56.318 -2.9105 20 11 2 0 0 0 0.62642 1 11366 11366 20.454 6.5476 1 1470300 55570 1868 36701 36722 54409 54409 -0.011194204534831442 YSRDYRRDYRN 11 Unmodified _YSRDYRRDYRN_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2615356445312 3 521.918555 1562.73384 NaN NaN NaN NaN NaN NaN NaN 120.49 1 115.84 115.34 116.34 -4.645 0 0 0 0.23698 1 23126 23126 2.6312 1.3016 1 55571 1150 36702 36723 54410 54410 -0.025021230013862805 YSRHNPAIE 9 Unmodified _YSRHNPAIE_ 0 0 0 ENSG00000177706|ENST00000313766|FAM20C ENSG00000177706|ENST00000313766|FAM20C ENSG00000177706|ENST00000313766|FAM20C MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7700805664062 2 543.76998 1085.52541 NaN NaN NaN NaN NaN NaN NaN 174.29 1 169.4 168.9 169.9 -4.8916 0 0 0 0.23508 1 34691 34691 9.3831 0.63772 1 55572 6533 36703 36724 54411 54411 -0.013934998476770488 YSRMQVVP 8 Unmodified _YSRMQVVP_ 0 0 0 REV__ENST00000215832.10_1_22:22115097-22115193:-|nuORF REV__ENST00000215832.10_1_22:22115097-22115193:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2550354003906 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 159.09 1 159.09 158.59 159.59 0 0 0 0 0.21486 1 31946 31946 5.7604 0.52976 1 + 55573 19999 36704 36725 54412 54412 0.005578448826440763 YSRVDPKIT 9 Unmodified _YSRVDPKIT_ 0 0 0 REV__ENSG00000115414|ENST00000354785|FN1 REV__ENSG00000115414|ENST00000354785|FN1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 360.2021484375 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 109.68 1 105.31 104.81 105.81 -4.3776 0 0 0 0.23508 1 21615 21615 2.7352 0 1 + 55574 15427 36705 36726 54413 54413 0.046171279889904326 YSSAPQFL 8 Unmodified _YSSAPQFL_ 0 0 0 ENSG00000113430|ENST00000231357|IRX4;nc|ENSG00000113430|P78413-2|IRX4 ENSG00000113430|ENST00000231357|IRX4 ENSG00000113430|ENST00000231357|IRX4 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 457.2194519042969 2 456.726718 911.438883 0.010547 4.8172E-06 0.06297 2.876E-05 0.073517 3.3577E-05 456.72675824000896 56.416 2.532 53.24 52.349 54.881 -3.1761 124 71 2 0 0 0 0.89386 1 10620 10620 0.25148 0.12366 1 2321100 55575 2741 36706 36727 54414 54414 -0.02037879402234921 YSSDEGSY 8 Unmodified _YSSDEGSY_ 0 0 0 ENSG00000139352|ENST00000266744|ASCL1 ENSG00000139352|ENST00000266744|ASCL1 ENSG00000139352|ENST00000266744|ASCL1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.756103515625 2 454.16943 906.324307 NaN NaN NaN NaN NaN NaN NaN 66.8 1 63.691 63.191 64.191 -3.1086 0 0 0 0.23749 1 12950 12950 0.12286 0 1 55576 4243 36707 36728 54415 54415 -0.13260233674839128 YSSIIILMF 9 Unmodified _YSSIIILMF_ 0 0 0 REV__GRIK3|p.T646M|1|0.17|ENSG00000163873|chr1:36817214-36817214|G/A|missense_variant REV__GRIK3|p.T646M|1|0.17|ENSG00000163873|chr1:36817214-36817214|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.796630859375 2 543.798829 1085.5831 NaN NaN NaN NaN NaN NaN NaN 169.04 1 169.04 168.54 169.54 0 0 0 0 0.23508 1 34678 34678 12.532 0.29089 1 + 55577 23591 36708 36729 54416 54416 0.04373626033543587 YSSQFGGGSQY 11 Unmodified _YSSQFGGGSQY_ 0 0 0 ENSG00000100353|ENST00000216190|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D ENSG00000100353|ENST00000216190|EIF3D ENSG00000100353|ENST00000216190|EIF3D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2550048828125 2 590.74891 1179.48327 0.040101 2.369E-05 0.074594 4.4066E-05 0.1147 6.7756E-05 590.7489880846704 61.099 0.44984 61.099 60.911 61.36 0 20 12 2 0 0 0 0.94227 1 11763 11763 11.495 2.7493 1 2331600 55578 1962 36709 36730 54417 54417 -0.09929520046671314 YSSQFGGGSQY 11 Unmodified _YSSQFGGGSQY_ 0 0 0 ENSG00000100353|ENST00000216190|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D ENSG00000100353|ENST00000216190|EIF3D ENSG00000100353|ENST00000216190|EIF3D MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.26806640625 2 590.74891 1179.48327 0.50972 0.00030112 -0.17432 -0.00010298 0.3354 0.00019814 590.7487405999537 64.71 0.54832 61.713 61.505 62.054 -2.9975 29 15 3 0 0 0 0.36112 1 12501 12501 17.572 6.673 1 2936000 55579 1962 36709 36730 54418 54418 -0.09929520046671314 YSSQFGGGSQY 11 Unmodified _YSSQFGGGSQY_ 0 0 0 ENSG00000100353|ENST00000216190|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D ENSG00000100353|ENST00000216190|EIF3D ENSG00000100353|ENST00000216190|EIF3D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2582397460938 2 590.74891 1179.48327 0.63504 0.00037515 -0.81809 -0.00048329 -0.18305 -0.00010814 590.7486122789998 65.158 0.48872 61.7 61.437 61.926 -3.4581 29 13 3 0 0 0 0.88374 1 12208 12208 11.502 4.8717 1 3469200 55580 1962 36709 36730 54419 54419 -0.09929520046671314 YSSQFGGGSQY 11 Unmodified _YSSQFGGGSQY_ 0 0 0 ENSG00000100353|ENST00000216190|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D ENSG00000100353|ENST00000216190|EIF3D ENSG00000100353|ENST00000216190|EIF3D MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2598876953125 2 590.74891 1179.48327 0.31294 0.00018487 -0.47787 -0.0002823 -0.16493 -9.743E-05 590.7488357573052 64.877 0.50922 61.594 61.317 61.826 -3.2832 25 14 3 0 0 0 0.82449 1 12214 12214 15.248 9.9516 1 2409000 55581 1962 36709 36730 54420 54420 -0.09929520046671314 YSSRSYSSGSY 11 Unmodified _YSSRSYSSGSY_ 0 0 0 REV__RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant REV__RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7677001953125 2 622.264924 1242.5153 0.91102 0.0005669 -1.5067 -0.00093758 -0.59569 -0.00037068 622.7672211493754 59.006 0.46417 56.095 55.784 56.248 -2.9105 24 12 3 0 0 0 0.50871 1 11345 11345 22.736 0 1 1534300 + 55582 15683 36710 36731 54421 54421 -0.09626152363557594 YSSRSYSSGSY 11 Unmodified _YSSRSYSSGSY_ 0 0 0 REV__RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant REV__RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 622.264924 1242.5153 0.25374 0.0001579 -1.6633 -0.001035 -1.4095 -0.00087709 622.7669188923202 55.878 0.17139 55.878 55.766 55.938 0 -0.10879 -0.00014939 NaN 22.736 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 951670 + 55583 15683 36710 36731 -0.09626152363557594 YSSRVRKF 8 Unmodified _YSSRVRKF_ 0 0 0 REV__ENSG00000131711|ENST00000296755|MAP1B REV__ENSG00000131711|ENST00000296755|MAP1B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2705688476562 2 521.793258 1041.57196 -0.26612 -0.00013886 0.06661 3.4757E-05 -0.19951 -0.0001041 521.7932889908246 85.008 0.75902 81.344 80.917 81.676 -3.6641 49 21 3 0 0 0 1.0147 1 16671 16671 9.3474 8.7459 1 9222100 + 55584 16086 36711 36732 54422 54422 0.05283984774268902 YSSSISHEAT 10 Unmodified _YSSSISHEAT_ 0 0 0 SDK1|p.V1762Wfs*2|1|0.28|ENSG00000146555|chr7:4208168-4208168|G/-|frameshift_variant;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;ENST00000476701.5_1_7:4169443-4308379:+|nuORF SDK1|p.V1762Wfs*2|1|0.28|ENSG00000146555|chr7:4208168-4208168|G/-|frameshift_variant SDK1|p.V1762Wfs*2|1|0.28|ENSG00000146555|chr7:4208168-4208168|G/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2835693359375 2 541.24346 1080.47237 0.30974 0.00016765 0.66522 0.00036005 0.97496 0.00052769 541.2437325083437 75.795 2.0277 72.161 71.467 73.495 -3.6337 124 57 3 0 0 0 0.65512 1 14388 14388 24.021 10.513 1 10165000 55585 4660 36712 36733 54423 54423 -0.0646492242099157 YSSTDQEESQS 11 Unmodified _YSSTDQEESQS_ 0 0 0 REV__ENSG00000198842|ENST00000361200|STYXL2 REV__ENSG00000198842|ENST00000361200|STYXL2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7522583007812 2 630.746761 1259.47897 NaN NaN NaN NaN NaN NaN NaN 93.524 1 89.381 88.881 89.881 -4.1435 0 0 0 0.23379 1 17828 17828 5.2969 0.96765 1 + 55586 19462 36713 36734 54424 54424 -0.14039074050924683 YSSVFWWTQ 9 Unmodified _YSSVFWWTQ_ 0 0 0 MS4A7|p.K208T|1|0.32|ENSG00000166927|chr11:60392761-60392761|A/C|missense_variant MS4A7|p.K208T|1|0.32|ENSG00000166927|chr11:60392761-60392761|A/C|missense_variant MS4A7|p.K208T|1|0.32|ENSG00000166927|chr11:60392761-60392761|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2797241210938 2 602.277106 1202.53966 NaN NaN NaN NaN NaN NaN NaN 45.186 1 42.319 41.819 42.819 -2.8666 0 0 0 0.19632 1 8197 8197 0.0033805 0 1 55587 12162 36714 36735 54425 54425 -0.053508474193904476 YSSVVSFYL 9 Unmodified _YSSVVSFYL_ 0 0 0 nc|ENSG00000151577|P35462-3|DRD3;ENSG00000151577|ENST00000383673|DRD3 nc|ENSG00000151577|P35462-3|DRD3 nc|ENSG00000151577|P35462-3|DRD3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 533.2677612304688 2 532.768583 1063.52261 -0.037426 -1.9939E-05 -3.8087 -0.0020291 -3.8461 -0.0020491 532.7666472761979 83.178 0.27045 79.479 79.284 79.554 -3.6985 10 7 2 0 0 0 0.50294 1 15870 15870 19.439 0.18201 1 1063500 55588 4875 36715 36736 54426 54426 -0.006607680251818238 YSTSNTKL 8 Unmodified _YSTSNTKL_ 0 0 0 CON__Q1A7A4 CON__Q1A7A4 CON__Q1A7A4 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 305.1749572753906 3 305.15903 912.455261 NaN NaN NaN NaN NaN NaN NaN 67.959 1 67.959 67.459 68.459 0 0 0 0 0.21486 1 13139 13139 0.40072 0 1 + 55589 683 36716 36737 54427 54427 -0.004467982361461509 YSVHLYVY 8 Unmodified _YSVHLYVY_ 0 0 0 L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|114|3|anti-sense L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|114|3|anti-sense L1ME1_dup14741|chr8:25510836-25512219:-|1.4707505823140987|0.2188578600898351|2.75|482.0|114|3|anti-sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2632446289062 2 522.263468 1042.51238 NaN NaN NaN NaN NaN NaN NaN 82.246 1 82.246 81.746 82.746 0 0 0 0 0.22934 1 16023 16023 3.5871 0.95582 1 55590 12034 36717 36738 54428 54428 -0.0071733095976469485 YSVMRKRTY 9 Unmodified _YSVMRKRTY_ 0 0 0 REV__nc|ENSG00000114650|Q12770-3|SCAP REV__nc|ENSG00000114650|Q12770-3|SCAP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3004760742188 2 602.318783 1202.62301 NaN NaN NaN NaN NaN NaN NaN 62.142 1 58.772 58.272 59.272 -3.3694 0 0 0 0.23508 1 11594 11594 8.5933 0.68312 1 + 55591 15381 36718 36739 54429 54429 0.029805657568431343 YSVPRRPVA 9 Unmodified _YSVPRRPVA_ 0 0 0 REV__ENST00000491308.5_1_1:155580060-155580830:+|nuORF REV__ENST00000491308.5_1_1:155580060-155580830:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2681884765625 2 522.801083 1043.58761 -0.39145 -0.00020465 -0.81887 -0.0004281 -1.2103 -0.00063276 522.8005452871607 104.37 0.71773 100.15 99.825 100.54 -4.2183 47 20 3 0 0 0 0.76271 1 20546 20546 20.454 3.5113 1 5736100 + 55592 22317 36719 36740 54430 54430 0.0675627129132863 YSVPRRPVA 9 Unmodified _YSVPRRPVA_ 0 0 0 REV__ENST00000491308.5_1_1:155580060-155580830:+|nuORF REV__ENST00000491308.5_1_1:155580060-155580830:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2691650390625 2 522.801083 1043.58761 -0.48567 -0.00025391 -0.51687 -0.00027022 -1.0025 -0.00052413 522.8007112164441 104.57 0.79297 100.23 99.798 100.59 -4.346 49 22 3 0 0 0 0.62921 1 20043 20043 24.021 19.124 1 5108800 + 55593 22317 36719 36740 54431 54431 0.0675627129132863 YSVQNKVDL 9 Unmodified _YSVQNKVDL_ 0 0 0 FAM118A|p.P252Q|1|0.04|ENSG00000100376|chr22:45332528-45332528|C/A|missense_variant FAM118A|p.P252Q|1|0.04|ENSG00000100376|chr22:45332528-45332528|C/A|missense_variant FAM118A|p.P252Q|1|0.04|ENSG00000100376|chr22:45332528-45332528|C/A|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2825927734375 2 533.282389 1064.55022 -0.053381 -2.8467E-05 0.46251 0.00024665 0.40913 0.00021818 533.282578105817 90.568 0.91798 90.568 90.015 90.933 0 76 25 4 0 0 0 0.54076 1 17589 17589 17.113 2.2746 1 19212000 55594 11793 36720 36741 54432 54432 0.020531352350417365 YSWGWIAIRKN 11 Unmodified _YSWGWIAIRKN_ 0 0 0 REV__ENST00000434918.6_1_2:162849795-162888681:-|nuORF REV__ENST00000434918.6_1_2:162849795-162888681:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.250732421875 3 465.250695 1392.73025 NaN NaN NaN NaN NaN NaN NaN 91.288 1 87.193 86.693 87.693 -4.0946 0 0 0 0.22632 1 17395 17395 8.4443 0 1 + 55595 19355 36721 36742 54433 54433 0.049598589626839384 YSWHWLPLAH 10 Unmodified _YSWHWLPLAH_ 0 0 0 REV__ENST00000503391.5_1_4:84200134-84200209:-|nuORF REV__ENST00000503391.5_1_4:84200134-84200209:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.22161865234375 3 437.220735 1308.64038 NaN NaN NaN NaN NaN NaN NaN 151.7 1 146.47 145.97 146.97 -5.2365 0 0 0 2.8426 1 29405 29405 0.26539 0.23918 1 + 55596 22450 36722 36743 54434 54434 -0.0015977064585968037 YSWSFPPY 8 Unmodified _YSWSFPPY_ 0 0 0 ENSG00000010404|ENST00000340855|IDS;ENST00000490775.5_1_X:148580774-148584869:-|nuORF;nc|ENSG00000241489|P22304-3|IDS;nc|ENSG00000241489|P22304-2|IDS;ENST00000464251.5_1_X:148568821-148584844:-|nuORF ENSG00000010404|ENST00000340855|IDS;ENST00000464251.5_1_X:148568821-148584844:-|nuORF ENSG00000010404|ENST00000340855|IDS MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.682373046875 2 523.734543 1045.45453 NaN NaN NaN NaN NaN NaN NaN 130.73 1 130.73 130.23 131.23 0 0 0 0 0.21486 1 25843 25843 5.7604 0 1 55597 1064;10108 36723 36744 54435 54435 -0.06637592885203958 YSWTSNYFEY 10 Unmodified _YSWTSNYFEY_ 0 0 0 REV__ENSG00000112936|ENST00000313164|C7 REV__ENSG00000112936|ENST00000313164|C7 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 453.7578430175781 3 453.855787 1358.54553 NaN NaN NaN NaN NaN NaN NaN 47.561 1 44.619 44.119 45.119 -2.9421 0 0 0 2.8426 1 8674 8674 1.9064 0 1 + 55598 15319 36724 36745 54436 54436 -0.11939793698388712 YSWWERSCQ 9 Unmodified _YSWWERSCQ_ 0 0 0 REV__ENST00000452600.1_1_2:130987557-130987968:+|nuORF REV__ENST00000452600.1_1_2:130987557-130987968:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7615966796875 2 622.761297 1243.50804 NaN NaN NaN NaN NaN NaN NaN 44.586 1 41.796 41.296 42.296 -2.79 0 0 0 0.19646 1 8381 8381 0.40827 0.36448 1 + 55599 21820 36725 36746 54437 54437 -0.10397163444963553 YSWWERSCQ 9 Unmodified _YSWWERSCQ_ 0 0 0 REV__ENST00000452600.1_1_2:130987557-130987968:+|nuORF REV__ENST00000452600.1_1_2:130987557-130987968:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.75732421875 2 622.761297 1243.50804 NaN NaN NaN NaN NaN NaN NaN 62.471 1 59.51 59.01 60.01 -2.9614 0 0 0 0.23508 1 12055 12055 6.7232 2.7788 1 + 55600 21820 36725 36746 54438 54438 -0.10397163444963553 YSYHDGYGE 9 Unmodified _YSYHDGYGE_ 0 0 0 nc|ENSG00000234414|P0DJD3-3|RBMY1A1;nc|ENSG00000244395|P0C7P1-2|RBMY1D;nc|ENSG00000234414|P0DJD3-2|RBMY1A1;nc|ENSG700|P0DJD4|RBMY1C;ENSG00000244395|ENST00000382680|RBMY1D;ENSG00000242875|ENST00000383020|RBMY1B;ENSG00000242389|ENST00000382659|RBMY1E;ENSG00000234414|ENST00000382707|RBMY1A1;ENSG00000226941|ENST00000250831|RBMY1J;ENSG00000169800|ENST00000303766|RBMY1F;nc|ENSG00000226941|Q15415-2|RBMY1F nc|ENSG00000234414|P0DJD3-3|RBMY1A1 nc|ENSG00000234414|P0DJD3-3|RBMY1A1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.766357421875 2 545.709254 1089.40395 0.33385 0.00018218 -0.73949 -0.00040354 -0.40564 -0.00022136 545.7088752631333 141.34 0.95683 141.34 140.96 141.91 0 94 27 6 0 0 0 0.68435 1 28148 28148 7.2892 1.9923 1 31997000 55601 6008 36726 36747 54439 54439 -0.1371716700084562 YSYHDGYGE 9 Unmodified _YSYHDGYGE_ 0 0 0 nc|ENSG00000234414|P0DJD3-3|RBMY1A1;nc|ENSG00000244395|P0C7P1-2|RBMY1D;nc|ENSG00000234414|P0DJD3-2|RBMY1A1;nc|ENSG700|P0DJD4|RBMY1C;ENSG00000244395|ENST00000382680|RBMY1D;ENSG00000242875|ENST00000383020|RBMY1B;ENSG00000242389|ENST00000382659|RBMY1E;ENSG00000234414|ENST00000382707|RBMY1A1;ENSG00000226941|ENST00000250831|RBMY1J;ENSG00000169800|ENST00000303766|RBMY1F;nc|ENSG00000226941|Q15415-2|RBMY1F nc|ENSG00000234414|P0DJD3-3|RBMY1A1 nc|ENSG00000234414|P0DJD3-3|RBMY1A1 MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 545.709254 1089.40395 0.33385 0.00018218 -0.73949 -0.00040354 -0.40564 -0.00022136 545.7088752631333 141.34 0.95683 141.34 140.96 141.91 0 0 0 NaN 7.2892 94 27 6 NaN NaN NaN NaN 0 NaN NaN 0 31997000 55602 6008 36726 36747 -0.1371716700084562 YSYILSAI 8 Unmodified _YSYILSAI_ 0 0 0 nc|ENSG00000213439|P0C628|OR5AC1 nc|ENSG00000213439|P0C628|OR5AC1 nc|ENSG00000213439|P0C628|OR5AC1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25079345703125 2 465.252569 928.490584 NaN NaN NaN NaN NaN NaN NaN 141.7 1 136.71 136.21 137.21 -4.9877 0 0 0 0.21486 1 27292 27292 5.7604 0 1 55603 12589 36727 36748 54440 54440 0.02347864291652968 YSYPSYGGYF 10 Unmodified _YSYPSYGGYF_ 0 0 0 REV__ENSG00000162928|ENST00000295030|PEX13 REV__ENSG00000162928|ENST00000295030|PEX13 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2808837890625 2 602.253297 1202.49204 0.12145 7.3146E-05 -2.0199 -0.0012165 -1.8985 -0.0011434 602.2525907667649 58.014 0.80109 58.014 57.41 58.211 0 45 22 3 0 0 0 0.29353 1 11053 11053 37.974 5.6685 1 6845500 + 55604 17541 36728 36749 54441 54441 -0.10110546410237475 YSYPTGNHTY 10 Unmodified _YSYPTGNHTY_ 0 0 0 PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2897338867188 2 601.759278 1201.504 0.45722 0.00027514 -0.75827 -0.0004563 -0.30105 -0.00018116 601.7589268300231 52.321 0.53207 52.321 52.04 52.573 0 33 14 3 0 0 0 0.26175 1 9894 9894 74.2 47.316 1 7370800 55605 1754 36729 36750 54442 54442 -0.08868929667050907 YSYPTGNHTY 10 Unmodified _YSYPTGNHTY_ 0 0 0 PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2809448242188 2 601.759278 1201.504 0.82953 0.00049918 -0.69237 -0.00041664 0.13716 8.2539E-05 601.7587871942103 55.775 0.58524 52.891 52.592 53.177 -2.8837 41 16 3 0 0 0 0.018082 2 10715 10637;10715 93.938 61.633 1 17769000 55606 1754 36729 36750 54443;54444 54444 -0.08868929667050907 YSYPTGNHTY 10 Unmodified _YSYPTGNHTY_ 0 0 0 PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2758178710938 2 601.759278 1201.504 0.41756 0.00025127 -0.15413 -9.2749E-05 0.26343 0.00015852 601.7590867420075 55.996 0.56187 52.806 52.529 53.09 -3.1895 39 15 3 0 0 0 0.011572 2 10341 10341;10424 103.82 71.518 1 11797000 55607 1754 36729 36750 54445;54446 54445 -0.08868929667050907 YSYPTGNHTY 10 Unmodified _YSYPTGNHTY_ 0 0 0 PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant PXN|p.P328Rfs*18|1|0.42|ENSG00000089159|chr12:120215229-120215229|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2764282226562 2 601.759278 1201.504 0.08304 4.997E-05 -0.026195 -1.5763E-05 0.056844 3.4207E-05 601.7591309867403 55.984 0.59928 52.808 52.483 53.082 -3.1761 36 16 3 0 0 0 0.20669 1 10355 10355 43.982 30.076 1 6975700 55608 1754 36729 36750 54447 54447 -0.08868929667050907 YSYTLTHY 8 Unmodified _YSYTLTHY_ 0 0 0 REV__NPTN|p.S176Y|1|0.09|ENSG00000156642|chr15:73592050-73592050|G/T|missense_variant REV__NPTN|p.S176Y|1|0.09|ENSG00000156642|chr15:73592050-73592050|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.697021484375 2 524.242732 1046.47091 -0.0084809 -4.446E-06 0.17633 9.2437E-05 0.16784 8.7991E-05 524.2428140266126 70.519 0.59275 70.519 70.242 70.834 0 38 16 3 0 0 0 0.96284 1 13632 13632 19.439 0.18201 1 5517600 + 55609 24378 36730 36751 54448 54448 -0.0504651171909245 YSYTLTHY 8 Unmodified _YSYTLTHY_ 0 0 0 REV__NPTN|p.S176Y|1|0.09|ENSG00000156642|chr15:73592050-73592050|G/T|missense_variant REV__NPTN|p.S176Y|1|0.09|ENSG00000156642|chr15:73592050-73592050|G/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6835327148438 2 524.242732 1046.47091 -0.31242 -0.00016378 0.46327 0.00024286 0.15085 7.908E-05 524.2430314165642 74.602 0.80283 70.925 70.551 71.354 -3.6764 45 22 3 0 0 0 0.98792 1 14153 14153 5.2307 0 1 2792000 + 55610 24378 36730 36751 54449 54449 -0.0504651171909245 YTAHRTLT 8 Unmodified _YTAHRTLT_ 0 0 0 nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE nc|ENSG00000185973|Q9NVH6-7|TMLHE nc|ENSG00000185973|Q9NVH6-7|TMLHE MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.7701721191406 2 481.756341 961.498129 NaN NaN NaN NaN NaN NaN NaN 33.475 1 31.259 30.759 31.759 -2.2158 0 0 0 0.20618 1 5835 5835 20.454 1.1966 1 55611 7023 36731 36752 54450 54450 0.015840166119460264 YTAIENELQ 9 Unmodified _YTAIENELQ_ 0 0 0 REV__KRT37|p.R396Q|1|0.16|ENSG00000108417|chr17:41421421-41421421|C/T|missense_variant REV__KRT37|p.R396Q|1|0.16|ENSG00000108417|chr17:41421421-41421421|C/T|missense_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2814331054688 2 540.764029 1079.5135 0.41583 0.00022487 0.34263 0.00018528 0.75846 0.00041015 540.7639348261785 39.192 1.006 39.192 38.603 39.609 0 60 28 3 0 0 0 0.62102 1 7172 7172 11.64 0 1 3348200 + 55612 23738 36732 36753 54451 54451 -0.023071613815318415 YTAKFESVP 9 Unmodified _YTAKFESVP_ 0 0 0 REV__nc|ENSG00000060656|Q92729-3|PTPRU REV__nc|ENSG00000060656|Q92729-3|PTPRU MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2694091796875 2 521.266207 1040.51786 -0.30675 -0.0001599 1.2341 0.00064331 0.92739 0.00048342 521.2668525469015 58.512 0.59232 55.601 55.337 55.929 -2.9105 42 16 3 0 0 0 0.39189 2 11227 11227;11270 26.268 7.0112 1 6078200 + 55613 14145 36733 36754 54452;54453 54452 -0.0007765216794268781 YTATKKRRQ 9 Unmodified _YTATKKRRQ_ 0 0 0 tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3356323242188 2 576.335821 1150.65709 NaN NaN NaN NaN NaN NaN NaN 60.778 1 57.844 57.344 58.344 -2.9333 0 0 0 0.23508 1 11702 11702 11.64 4.9171 1 55614 26142 36734 36755 54454 54454 0.08778730240078403 YTCEECGN 8 Unmodified _YTCEECGN_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 460.24468994140625 2 459.652035 917.289518 0.035179 1.617E-05 -1.6115 -0.00074074 -1.5763 -0.00072457 459.6525101679224 125.71 0.60103 121.11 120.83 121.43 -4.5984 38 16 3 0 0 0 0.89926 1 24749 24749 1.3295 0 1 1782700 55615 995 36735 36756 54455 54455 -0.17243516078804078 YTCEECGQAF 10 Unmodified _YTCEECGQAF_ 0 0 0 ZNF479|p.K332Afs*2|1|0.05|ENSG00000185177|chr7:57120421-57120422|-/AGGC|frameshift_variant;ENSG00000241149|ENST00000330020|ZNF722;ENSG00000197123|ENST00000421025|ZNF679;ENSG00000185177|ENST00000319636|ZNF479 ZNF479|p.K332Afs*2|1|0.05|ENSG00000185177|chr7:57120421-57120422|-/AGGC|frameshift_variant ZNF479|p.K332Afs*2|1|0.05|ENSG00000185177|chr7:57120421-57120422|-/AGGC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3361206054688 2 575.712624 1149.4107 0.18889 0.00010874 0.32197 0.00018536 0.51086 0.00029411 575.7127963456662 61.161 1.109 57.921 57.581 58.69 -3.2395 85 31 4 0 0 0 0.34654 1 11459 11459 34.402 3.7652 1 21397000 55616 6967 36736 36757 54456 54456 -0.15803313436140343 YTCPKMIEME 10 Unmodified _YTCPKMIEME_ 0 0 0 ENSG00000156253|ENST00000493196|RWDD2B;ENST00000286777.6_1_21:30380429-30391601:-|nuORF;ENST00000472184.1_1_21:30380697-30391601:-|nuORF ENSG00000156253|ENST00000493196|RWDD2B ENSG00000156253|ENST00000493196|RWDD2B MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7769775390625 2 622.771628 1243.5287 NaN NaN NaN NaN NaN NaN NaN 130.57 1 130.57 130.07 131.07 0 0 0 0 0.22588 1 25808 25808 9.3831 2.66 1 55617 5082 36737 36758 54457 54457 -0.08332077171826313 YTCSCYPGFY 10 Unmodified _YTCSCYPGFY_ 0 0 0 SELP|p.G727Ifs*14|1|0.04|ENSG00000174175|chr1:169594799-169594800|CC/-|frameshift_variant;SELP|p.G727Ffs*17|1|0.04|ENSG00000174175|chr1:169594800-169594801|-/GTGGAAA|frameshift_variant;ENSG00000174175|ENST00000263686|SELP SELP|p.G727Ifs*14|1|0.04|ENSG00000174175|chr1:169594799-169594800|CC/-|frameshift_variant SELP|p.G727Ifs*14|1|0.04|ENSG00000174175|chr1:169594799-169594800|CC/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.3016967773438 2 602.22791 1202.44127 0.39036 0.00023509 4.2437 0.0025556 4.634 0.0027907 602.2293204366179 135.15 0.13571 135.15 135.09 135.22 0 5 3 2 0 0 0 0.75565 1 26752 26752 3.9444 0.66309 1 1199000 55618 6334 36738 36759 54458 54458 -0.15185535051091392 YTCSCYPGFY 10 Unmodified _YTCSCYPGFY_ 0 0 0 SELP|p.G727Ifs*14|1|0.04|ENSG00000174175|chr1:169594799-169594800|CC/-|frameshift_variant;SELP|p.G727Ffs*17|1|0.04|ENSG00000174175|chr1:169594800-169594801|-/GTGGAAA|frameshift_variant;ENSG00000174175|ENST00000263686|SELP SELP|p.G727Ifs*14|1|0.04|ENSG00000174175|chr1:169594799-169594800|CC/-|frameshift_variant SELP|p.G727Ifs*14|1|0.04|ENSG00000174175|chr1:169594799-169594800|CC/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2880249023438 2 602.22791 1202.44127 NaN NaN NaN NaN NaN NaN NaN 124.51 1 119.74 119.24 120.24 -4.7681 0 0 0 2.8426 1 23911 23911 0.26539 0.2216 1 55619 6334 36738 36759 54459 54459 -0.15185535051091392 YTCSDCSPCC 10 Unmodified _YTCSDCSPCC_ 0 0 0 REV__KCP|p.S1006Afs*19|1|0.32|ENSG00000135253|chr7:128884051-128884051|G/-|frameshift_variant;REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP REV__KCP|p.S1006Afs*19|1|0.32|ENSG00000135253|chr7:128884051-128884051|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.1583862304688 2 541.158313 1080.30207 NaN NaN NaN NaN NaN NaN NaN 6.2914 1 5.6652 5.1652 6.1652 -0.62626 0 0 0 0.22588 1 451 451 0 0 1 + 55620 16253;24048 36739 36760 54460 54460 -0.23486564002428167 YTCSDCSPCC 10 Unmodified _YTCSDCSPCC_ 0 0 0 REV__KCP|p.S1006Afs*19|1|0.32|ENSG00000135253|chr7:128884051-128884051|G/-|frameshift_variant;REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP REV__KCP|p.S1006Afs*19|1|0.32|ENSG00000135253|chr7:128884051-128884051|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2720336914062 2 541.158313 1080.30207 NaN NaN NaN NaN NaN NaN NaN 171.52 1 166.65 166.15 167.15 -4.873 0 0 0 0.22588 1 33997 33997 1.6526 1.0511 1 + 55621 16253;24048 36739 36760 54461 54461 -0.23486564002428167 YTCSECGKDFR 11 Unmodified _YTCSECGKDFR_ 0 0 0 ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655 ENSG00000197343|ENST00000252713|ZNF655 ENSG00000197343|ENST00000252713|ZNF655 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2341003417969 3 436.849762 1307.52746 -0.007618 -3.3279E-06 2.3345 0.0010198 2.3268 0.0010165 437.18513696805593 19.445 0.14531 18.049 17.992 18.137 -1.3966 6 3 2 0 0 0 0.81287 1 3200 3200 1.9275 0.021128 1 349970 55622 7357 36740 36761 54462 54462 -0.1140057521640756 YTCWDNKDCL 10 Unmodified _YTCWDNKDCL_ 0 0 0 RXRG|p.R176W|1|0.23|ENSG00000143171|chr1:165417137-165417137|G/A|missense_variant RXRG|p.R176W|1|0.23|ENSG00000143171|chr1:165417137-165417137|G/A|missense_variant RXRG|p.R176W|1|0.23|ENSG00000143171|chr1:165417137-165417137|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7521362304688 2 630.754824 1259.49509 NaN NaN NaN NaN NaN NaN NaN 100.33 1 96.037 95.537 96.537 -4.297 0 0 0 0.22588 1 19189 19189 7.2892 0.56607 1 55623 25631 36741 36762 54463 54463 -0.1242736261938262 YTDAALNY 8 Unmodified _YTDAALNY_ 0 0 0 ENSG00000123607|ENST00000243344|TTC21B;ENST00000497425.1_1_2:166736340-166740450:-|nuORF ENSG00000123607|ENST00000243344|TTC21B ENSG00000123607|ENST00000243344|TTC21B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 930.477783203125 1 930.420339 929.413062 0.54136 0.00050369 -0.28395 -0.00026419 0.25741 0.0002395 930.4200293506974 73.233 0.49714 73.233 72.953 73.45 0 19 13 2 0 0 0 0.23259 1 14220 14220 67.344 22.937 1 2992300 55624 3276 36742 36763 54464 54464 -0.05446773644541736 YTDAALNY 8 Unmodified _YTDAALNY_ 0 0 0 ENSG00000123607|ENST00000243344|TTC21B;ENST00000497425.1_1_2:166736340-166740450:-|nuORF ENSG00000123607|ENST00000243344|TTC21B ENSG00000123607|ENST00000243344|TTC21B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 930.4967651367188 1 930.420339 929.413062 0.12814 0.00011923 0.17202 0.00016005 0.30016 0.00027927 930.420451401669 77.07 0.48857 73.606 73.374 73.862 -3.4633 21 13 2 0 0 0 0.054667 2 15046 15046;15054 115.69 41.269 1 3529500 55625 3276 36742 36763 54465;54466 54465 -0.05446773644541736 YTDAALNY 8 Unmodified _YTDAALNY_ 0 0 0 ENSG00000123607|ENST00000243344|TTC21B;ENST00000497425.1_1_2:166736340-166740450:-|nuORF ENSG00000123607|ENST00000243344|TTC21B ENSG00000123607|ENST00000243344|TTC21B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2505798339844 2 465.713808 929.413062 -0.077486 -3.6087E-05 0.30865 0.00014374 0.23116 0.00010765 465.71382650614635 77.097 0.55501 73.634 73.307 73.862 -3.4633 32 15 3 0 0 0 0.93477 1 15019 15019 24.674 12.142 1 4292700 55626 3276 36742 36763 54467 54467 -0.05446773644541736 YTDAALNY 8 Unmodified _YTDAALNY_ 0 0 0 ENSG00000123607|ENST00000243344|TTC21B;ENST00000497425.1_1_2:166736340-166740450:-|nuORF ENSG00000123607|ENST00000243344|TTC21B ENSG00000123607|ENST00000243344|TTC21B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.25048828125 2 465.713808 929.413062 -0.002554 -1.1894E-06 0.19387 9.0288E-05 0.19132 8.9098E-05 465.71385541318443 77.483 0.49422 73.716 73.401 73.895 -3.7664 23 13 2 0 0 0 0.50973 1 14674 14674 40.449 4.4044 1 1742700 55627 3276 36742 36763 54468 54468 -0.05446773644541736 YTDAALNY 8 Unmodified _YTDAALNY_ 0 0 0 ENSG00000123607|ENST00000243344|TTC21B;ENST00000497425.1_1_2:166736340-166740450:-|nuORF ENSG00000123607|ENST00000243344|TTC21B ENSG00000123607|ENST00000243344|TTC21B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 930.4793701171875 1 930.420339 929.413062 0.27143 0.00025255 0.18955 0.00017636 0.46098 0.00042891 930.4203961325453 77.371 0.4938 73.605 73.367 73.86 -3.7664 21 13 2 0 0 0 0.022655 1 14686 14686 74.423 0 1 2656700 55628 3276 36742 36763 54469 54469 -0.05446773644541736 YTDAALNY 8 Unmodified _YTDAALNY_ 0 0 0 ENSG00000123607|ENST00000243344|TTC21B;ENST00000497425.1_1_2:166736340-166740450:-|nuORF ENSG00000123607|ENST00000243344|TTC21B ENSG00000123607|ENST00000243344|TTC21B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.25048828125 2 465.713808 929.413062 0.10559 4.9176E-05 0.14501 6.7531E-05 0.2506 0.00011671 465.7137705458594 77.249 0.52359 73.591 73.292 73.815 -3.6588 26 14 2 0 0 0 0.58903 1 14715 14715 38.151 9.6643 1 2743200 55629 3276 36742 36763 54470 54470 -0.05446773644541736 YTDAALNY 8 Unmodified _YTDAALNY_ 0 0 0 ENSG00000123607|ENST00000243344|TTC21B;ENST00000497425.1_1_2:166736340-166740450:-|nuORF ENSG00000123607|ENST00000243344|TTC21B ENSG00000123607|ENST00000243344|TTC21B MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 930.4974975585938 1 930.420339 929.413062 0.24125 0.00022446 0.0804 7.4806E-05 0.32165 0.00029927 930.4203299194885 77.263 0.52199 73.604 73.327 73.849 -3.6588 24 14 2 0 0 0 0.079144 1 14710 14710 77.984 10.64 1 3937500 55630 3276 36742 36763 54471 54471 -0.05446773644541736 YTDEDMLKY 9 Unmodified _YTDEDMLKY_ 0 0 0 SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant;ENSG00000164483|ENST00000439090|SAMD3;nc|ENSG00000164483|Q8N6K7-3|SAMD3 SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 590.259765625 2 589.257722 1176.50089 0.45242 0.00026659 -0.21629 -0.00012745 0.23613 0.00013914 589.257616997547 94.638 0.59607 90.646 90.313 90.909 -3.9919 32 16 3 0 0 0 0.058839 2 18549 18549;18562 86.332 71.375 1 4272000 55631 5548 36743 36764 54472;54473 54472 -0.0802994083608155 YTDEDMLKY 9 Unmodified _YTDEDMLKY_ 0 0 0 SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant;ENSG00000164483|ENST00000439090|SAMD3;nc|ENSG00000164483|Q8N6K7-3|SAMD3 SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 590.2614135742188 2 589.257722 1176.50089 0.037615 2.2165E-05 0.25516 0.00015035 0.29277 0.00017252 589.2579100061942 94.449 0.58527 90.605 90.228 90.813 -3.844 37 16 3 0 0 0 0.12935 2 18134 18090;18134 37.075 35.667 1 4948900 55632 5548 36743 36764 54474;54475 54475 -0.0802994083608155 YTDEDMLKY 9 Unmodified _YTDEDMLKY_ 0 0 0 SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant;ENSG00000164483|ENST00000439090|SAMD3;nc|ENSG00000164483|Q8N6K7-3|SAMD3 SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 589.257722 1176.50089 0.18889 0.0001113 0.089936 5.2995E-05 0.27882 0.0001643 589.2578332615565 90.353 0.49445 90.353 90.049 90.543 0 -0.17039 0.00013779 NaN 86.332 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3549500 55633 5548 36743 36764 -0.0802994083608155 YTDEDMLKY 9 Unmodified _YTDEDMLKY_ 0 0 0 SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant;ENSG00000164483|ENST00000439090|SAMD3;nc|ENSG00000164483|Q8N6K7-3|SAMD3 SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 589.257722 1176.50089 0.57592 0.00033937 -0.24347 -0.00014347 0.33245 0.0001959 589.2576868746628 94.683 0.62956 90.491 90.126 90.755 -4.1911 -0.032375 -0.00025513 NaN 86.332 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4474000 55634 5548 36743 36764 -0.0802994083608155 YTDHGSDHHY 10 Unmodified _YTDHGSDHHY_ 0 0 0 ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7 ENST00000541475.5_1_11:114278100-114278526:+|nuORF ENST00000541475.5_1_11:114278100-114278526:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 412.4990234375 3 411.163614 1230.46901 -0.10674 -4.3888E-05 0.17671 7.2658E-05 0.069971 2.877E-05 411.16397167312016 12.944 1.4536 12.944 12.791 14.244 0 123 41 6 0 0 0 0.0053224 1 1836 1836 75.571 66.819 1 184090000 55635 1533 36744 36765 54476 54476 -0.1370017247497799 YTDHGSDHHY 10 Unmodified _YTDHGSDHHY_ 0 0 0 ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7 ENST00000541475.5_1_11:114278100-114278526:+|nuORF ENST00000541475.5_1_11:114278100-114278526:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 309.62664794921875 4 308.62453 1230.46901 -0.93182 -0.00028758 0.97036 0.00029948 0.038543 1.1895E-05 308.6248290045606 13.616 0.49549 12.606 12.483 12.979 -1.0098 35 13 5 0 0 0 0.47611 1 1993 1993 12.714 7.8169 1 13264000 55636 1533 36744 36765 54477 54477 -0.1370017247497799 YTDHGSDHHY 10 Unmodified _YTDHGSDHHY_ 0 0 0 ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7 ENST00000541475.5_1_11:114278100-114278526:+|nuORF ENST00000541475.5_1_11:114278100-114278526:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 411.163614 1230.46901 -0.83035 -0.00034141 0.9379 0.00038563 0.10756 4.4224E-05 411.16423407165195 13.616 1.3669 12.606 12.448 13.815 -1.0098 -0.043178 0.0002877 NaN 75.571 91 38 4 NaN NaN NaN NaN 0 NaN NaN 0 131540000 55637 1533 36744 36765 -0.1370017247497799 YTDHGSDHHY 10 Unmodified _YTDHGSDHHY_ 0 0 0 ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7 ENST00000541475.5_1_11:114278100-114278526:+|nuORF ENST00000541475.5_1_11:114278100-114278526:+|nuORF MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 411.163614 1230.46901 -0.69463 -0.00028561 0.7504 0.00030854 0.055771 2.2931E-05 411.1639610675882 13.571 1.147 12.398 12.279 13.426 -1.173 -0.25138 5.6422E-05 NaN 75.571 81 32 5 NaN NaN NaN NaN 0 NaN NaN 0 34310000 55638 1533 36744 36765 -0.1370017247497799 YTDHQNSSSY 10 Unmodified _YTDHQNSSSY_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.3009643554688 2 601.241449 1200.46835 -0.082053 -4.9333E-05 0.39666 0.00023849 0.31461 0.00018916 601.2417321305628 17.539 0.78958 16.267 16.074 16.864 -1.2722 59 22 6 0 0 0 0.6817 1 2626 2626 13.042 2.9685 1 55055000 55639 3357 36745 36766 54478 54478 -0.12387011914688628 YTDHQNSSSY 10 Unmodified _YTDHQNSSSY_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 601.241449 1200.46835 0.30531 0.00018357 0.0073121 4.3964E-06 0.31262 0.00018796 601.2414936447134 16.387 0.93668 16.387 16.023 16.96 0 0.094839 3.0576E-05 NaN 13.042 83 26 6 NaN NaN NaN NaN 0 NaN NaN 0 97392000 55640 3357 36745 36766 -0.12387011914688628 YTDHQNSSSY 10 Unmodified _YTDHQNSSSY_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 601.241449 1200.46835 0.78258 0.00047052 -0.52218 -0.00031396 0.2604 0.00015656 601.2412402985954 17.534 1.0074 16.223 15.995 17.002 -1.3109 -0.069758 -0.00060613 NaN 13.042 80 28 5 NaN NaN NaN NaN 0 NaN NaN 0 111620000 55641 3357 36745 36766 -0.12387011914688628 YTDIKNLKK 9 Unmodified _YTDIKNLKK_ 0 0 0 ENSG00000085274|ENST00000349841|MYNN ENSG00000085274|ENST00000349841|MYNN ENSG00000085274|ENST00000349841|MYNN MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2164001464844 3 374.888763 1121.64446 -0.14872 -5.5753E-05 -0.12255 -4.5942E-05 -0.27127 -0.0001017 374.88856949134714 22.874 0.45242 22.874 22.643 23.096 0 21 12 2 0 0 0 0.84094 1 3876 3876 13.615 9.086 1 1600100 55642 1677 36746 36767 54479 54479 0.08850274057181196 YTDIKNLKK 9 Unmodified _YTDIKNLKK_ 0 0 0 ENSG00000085274|ENST00000349841|MYNN ENSG00000085274|ENST00000349841|MYNN ENSG00000085274|ENST00000349841|MYNN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 375.22296142578125 3 374.888763 1121.64446 0.76539 0.00028694 -0.91836 -0.00034428 -0.15297 -5.7347E-05 374.88828307708144 24.487 0.37711 22.838 22.683 23.06 -1.6482 23 10 3 0 0 0 0.29284 1 4282 4282 32.037 13.664 1 1131300 55643 1677 36746 36767 54480 54480 0.08850274057181196 YTDIKNLKK 9 Unmodified _YTDIKNLKK_ 0 0 0 ENSG00000085274|ENST00000349841|MYNN ENSG00000085274|ENST00000349841|MYNN ENSG00000085274|ENST00000349841|MYNN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2228698730469 3 374.888763 1121.64446 0.015134 5.6737E-06 -0.25193 -9.4446E-05 -0.2368 -8.8773E-05 374.8885118632034 24.405 0.44979 22.87 22.644 23.094 -1.5342 25 12 3 0 0 0 0.11282 1 3969 3969 51.415 11.176 1 1152000 55644 1677 36746 36767 54481 54481 0.08850274057181196 YTDIKNLKK 9 Unmodified _YTDIKNLKK_ 0 0 0 ENSG00000085274|ENST00000349841|MYNN ENSG00000085274|ENST00000349841|MYNN ENSG00000085274|ENST00000349841|MYNN MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.1924133300781 3 374.888763 1121.64446 -0.91815 -0.00034421 0.44299 0.00016607 -0.47517 -0.00017813 374.8888672222445 24.69 0.44187 22.837 22.642 23.084 -1.8534 23 12 3 0 0 0 0.35556 2 4052 4019;4052 26.021 8.5781 1 980280 55645 1677 36746 36767 54482;54483 54483 0.08850274057181196 YTDITYSFYIR 11 Unmodified _YTDITYSFYIR_ 0 0 0 CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant;nc|ENSG00000147434|Q15825-2|CHRNA6;ENSG00000147434|ENST00000276410|CHRNA6 CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant CHRNA6|p.L286Cfs*26|1|0.43|ENSG00000147434|chr8:42756342-42756342|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.2369689941406 3 481.23812 1440.69253 NaN NaN NaN NaN NaN NaN NaN 19.724 1 18.327 17.827 18.827 -1.3966 0 0 0 0.22632 1 3263 3263 0.094841 0.088886 1 55646 552 36747 36768 54484 54484 -0.010186968134348717 YTDKVVIGM 9 Oxidation (M) _YTDKVVIGM(Oxidation (M))_ YTDKVVIGM(1) YTDKVVIGM(64) 0 0 1 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2708740234375 2 521.267893 1040.52123 0.10766 5.612E-05 -0.055219 -2.8784E-05 0.052442 2.7336E-05 521.2678194972007 55.144 0.74022 55.144 54.595 55.335 0 46 20 3 0 0 0 0.072372 1 10533 10533 63.961 42.424 1 11663000 55647 946 36748 36769 54485 54485 6 0.002592746144046032 YTDKVVIGM 9 Oxidation (M) _YTDKVVIGM(Oxidation (M))_ YTDKVVIGM(1) YTDKVVIGM(74) 0 0 1 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2701416015625 2 521.267893 1040.52123 0.079655 4.1522E-05 -0.97772 -0.00050966 -0.89807 -0.00046813 521.2672896654155 55.642 0.77917 55.642 55.302 56.081 0 49 21 3 0 0 0 0.051875 4 10633 10561;10592;10633;10636 74.216 53.805 1 10869000 55648 946 36748 36769 54486;54487;54488;54489 54488 6 0.002592746144046032 YTDKVVIGM 9 Oxidation (M) _YTDKVVIGM(Oxidation (M))_ YTDKVVIGM(1) YTDKVVIGM(54) 0 0 1 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.270751953125 2 521.267893 1040.52123 -0.32469 -0.00016925 0.26568 0.00013849 -0.059019 -3.0765E-05 521.2680340512075 58.084 0.76825 55.174 54.604 55.372 -2.9105 47 21 3 0 0 0 0.10573 1 11172 11172 53.833 28.433 1 5228000 55649 946 36748 36769 54490 54490 6 0.002592746144046032 YTDKVVIGM 9 Oxidation (M) _YTDKVVIGM(Oxidation (M))_ YTDKVVIGM(1) YTDKVVIGM(40) 0 0 1 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2706298828125 2 521.267893 1040.52123 -0.63694 -0.00033202 0.66411 0.00034618 0.027169 1.4162E-05 521.2682287916824 58.468 0.69787 55.216 54.685 55.383 -3.2517 47 19 4 0 0 0 0.063576 2 10883 10838;10883 41.84 30.93 1 4272300 55650 946 36748 36769 54491;54492 54492 6 0.002592746144046032 YTDKVVIGM 9 Oxidation (M) _YTDKVVIGM(Oxidation (M))_ YTDKVVIGM(1) YTDKVVIGM(46) 0 0 1 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1 ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2696533203125 2 521.267893 1040.52123 -0.63458 -0.00033079 -1.313 -0.00068441 -1.9476 -0.0010152 521.267123054657 58.931 0.67561 55.679 55.348 56.023 -3.2517 46 18 3 0 0 0 0.053873 1 10923 10923 46.34 36.633 1 6351800 55651 946 36748 36769 54493 54493 6 0.002592746144046032 YTDLLGQF 8 Unmodified _YTDLLGQF_ 0 0 0 REV__ENST00000464332.5_1_8:144658600-144658955:-|nuORF REV__ENST00000464332.5_1_8:144658600-144658955:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.7228088378906 2 478.739825 955.465098 NaN NaN NaN NaN NaN NaN NaN 88.319 1 84.569 84.069 85.069 -3.7501 0 0 0 0.19954 1 16902 16902 24.674 1.5255 1 + 55652 16953 36749 36770 54494 54494 -0.01441610230756396 YTDLPNRQL 9 Unmodified _YTDLPNRQL_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 560.7887573242188 2 560.293288 1118.57202 -0.11887 -6.6602E-05 0.11982 6.7135E-05 0.00095162 5.3319E-07 560.2933227078446 69.413 0.49681 66.234 65.941 66.437 -3.1796 19 13 3 0 0 0 0.48644 1 13475 13475 20.454 9.6297 1 1779300 55653 1097 36750 36771 54495 54495 0.017479399836020093 YTDLPNRQL 9 Unmodified _YTDLPNRQL_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 560.293288 1118.57202 0.37834 0.00021198 -0.17108 -9.5852E-05 0.20727 0.00011613 560.2932650124557 69.598 0.41954 66.207 66.052 66.471 -3.3903 -0.013242 -0.0002 NaN 20.454 19 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1880000 55654 1097 36750 36771 0.017479399836020093 YTDMESEDY 9 Unmodified _YTDMESEDY_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3359985351562 2 576.705519 1151.39649 0.25985 0.00014986 -0.23778 -0.00013713 0.022068 1.2726E-05 576.7053794170473 54.022 0.9585 54.022 53.567 54.525 0 80 26 4 0 0 0 0.031632 1 10304 10304 81.613 45.569 1 18300000 55655 1701 36751 36772 54496 54496 -0.17315687383438672 YTDMESEDY 9 Unmodified _YTDMESEDY_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.338134765625 2 576.705519 1151.39649 -0.087901 -5.0693E-05 0.088126 5.0823E-05 0.00022586 1.3026E-07 576.7056040347618 57.427 1.0174 54.533 54.166 55.184 -2.8944 95 28 4 0 0 0 0.0019884 1 11011 11011 108 71.953 1 35971000 55656 1701 36751 36772 54497 54497 -0.17315687383438672 YTDMESEDY 9 Unmodified _YTDMESEDY_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.3190307617188 2 576.705519 1151.39649 0.19356 0.00011163 -0.22314 -0.00012869 -0.029586 -1.7062E-05 576.7055035451924 57.674 1.0575 54.422 54.078 55.135 -3.2517 89 29 4 0 0 0 7.863E-16 1 10703 10703 97.138 95.446 1 20979000 55657 1701 36751 36772 54498 54498 -0.17315687383438672 YTDMESEDY 9 Unmodified _YTDMESEDY_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3336181640625 2 576.705519 1151.39649 0.072926 4.2057E-05 0.056039 3.2318E-05 0.12897 7.4375E-05 576.7056014177592 57.667 1.1542 54.462 54.042 55.196 -3.2052 96 32 4 0 0 0 7.863E-16 1 10768 10768 105.38 103.69 1 21530000 55658 1701 36751 36772 54499 54499 -0.17315687383438672 YTDNIRTA 8 Unmodified _YTDNIRTA_ 0 0 0 REV__nc|ENSG00000241322|O95170-2|FBXW10B REV__nc|ENSG00000241322|O95170-2|FBXW10B MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 478.7417907714844 2 477.237981 952.461409 -0.28831 -0.00013759 0.50043 0.00023883 0.21212 0.00010123 477.23815828923347 39.429 0.50058 36.88 36.606 37.106 -2.5491 40 13 4 0 0 0 0.66265 1 7346 7346 18.135 0 1 4895400 + 55659 18261 36752 36773 54500 54500 -0.016722800046181874 YTDNIRTA 8 Unmodified _YTDNIRTA_ 0 0 0 REV__nc|ENSG00000241322|O95170-2|FBXW10B REV__nc|ENSG00000241322|O95170-2|FBXW10B MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 2 477.237981 952.461409 -0.039082 -1.8651E-05 0.22131 0.00010562 0.18223 8.6967E-05 477.2380051302691 37.083 0.5505 37.083 36.743 37.293 0 0.14324 -3.1954E-05 NaN 18.135 39 15 3 NaN NaN NaN NaN 0 NaN NaN 0 5583500 + 55660 18261 36752 36773 -0.016722800046181874 YTDNIRTA 8 Unmodified _YTDNIRTA_ 0 0 0 REV__nc|ENSG00000241322|O95170-2|FBXW10B REV__nc|ENSG00000241322|O95170-2|FBXW10B MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 477.237981 952.461409 -0.28831 -0.00013759 0.50043 0.00023883 0.21212 0.00010123 477.23815828923347 39.429 0.50058 36.88 36.606 37.106 -2.5491 -0.059731 0.00023446 NaN 18.135 40 13 4 NaN NaN NaN NaN 0 NaN NaN 0 4895400 + 55661 18261 36752 36773 -0.016722800046181874 YTDNIRTA 8 Unmodified _YTDNIRTA_ 0 0 0 REV__nc|ENSG00000241322|O95170-2|FBXW10B REV__nc|ENSG00000241322|O95170-2|FBXW10B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 477.237981 952.461409 0.0051351 2.4507E-06 0.23323 0.00011131 0.23836 0.00011376 477.23805893002407 39.316 0.51797 36.874 36.582 37.1 -2.4419 -0.065637 -2.058E-05 NaN 18.135 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5303900 + 55662 18261 36752 36773 -0.016722800046181874 YTDNIRTA 8 Unmodified _YTDNIRTA_ 0 0 0 REV__nc|ENSG00000241322|O95170-2|FBXW10B REV__nc|ENSG00000241322|O95170-2|FBXW10B MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 477.237981 952.461409 0.15681 7.4834E-05 0.10038 4.7906E-05 0.25719 0.00012274 477.2379682255059 39.327 0.59263 36.922 36.545 37.137 -2.4049 -0.017868 -0.00014738 NaN 18.135 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4224900 + 55663 18261 36752 36773 -0.016722800046181874 YTDNLVRV 8 Unmodified _YTDNLVRV_ 0 0 0 ENSG00000204628|ENST00000512805|RACK1;ENST00000509148.1_1_5:180663979-180664048:-|nuORF ENSG00000204628|ENST00000512805|RACK1 ENSG00000204628|ENST00000512805|RACK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2546691894531 2 490.263999 978.513445 0.60941 0.00029877 -0.67446 -0.00033066 -0.065051 -3.1892E-05 490.26380189390966 80.02 0.70186 80.02 79.545 80.246 0 25 19 2 0 0 0 0.27447 2 15565 15546;15565 37.974 12.575 1 1345300 55664 7599 36753 36774 54501;54502 54502 0.02332883409144415 YTDNLVRV 8 Unmodified _YTDNLVRV_ 0 0 0 ENSG00000204628|ENST00000512805|RACK1;ENST00000509148.1_1_5:180663979-180664048:-|nuORF ENSG00000204628|ENST00000512805|RACK1 ENSG00000204628|ENST00000512805|RACK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.2642822265625 2 490.263999 978.513445 0.096846 4.748E-05 -0.12904 -6.3264E-05 -0.032194 -1.5784E-05 490.2640044804408 83.369 0.73692 79.761 79.413 80.15 -3.6079 31 20 2 0 0 0 0.14223 3 16291 16287;16291;16306 54.774 34.764 1 1768800 55665 7599 36753 36774 54503;54504;54505 54504 0.02332883409144415 YTDNLVRV 8 Unmodified _YTDNLVRV_ 0 0 0 ENSG00000204628|ENST00000512805|RACK1;ENST00000509148.1_1_5:180663979-180664048:-|nuORF ENSG00000204628|ENST00000512805|RACK1 ENSG00000204628|ENST00000512805|RACK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.25439453125 2 490.263999 978.513445 0.22559 0.0001106 0.017622 8.6395E-06 0.24321 0.00011924 490.26405705337817 83.605 0.61133 79.731 79.466 80.077 -3.8736 24 16 2 0 0 0 0.14223 3 15881 15881;15896;15898 54.774 30.158 1 1851500 55666 7599 36753 36774 54506;54507;54508 54506 0.02332883409144415 YTDNLVRV 8 Unmodified _YTDNLVRV_ 0 0 0 ENSG00000204628|ENST00000512805|RACK1;ENST00000509148.1_1_5:180663979-180664048:-|nuORF ENSG00000204628|ENST00000512805|RACK1 ENSG00000204628|ENST00000512805|RACK1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2640686035156 2 490.263999 978.513445 -0.31428 -0.00015408 0.26082 0.00012787 -0.053453 -2.6206E-05 490.26418532781537 83.498 0.75861 79.799 79.246 80.005 -3.6985 30 21 2 0 0 0 0.14223 4 15946 15898;15943;15946;15962 54.774 48.987 1 1550100 55667 7599 36753 36774 54509;54510;54511;54512 54511 0.02332883409144415 YTDPSSLRK 9 Unmodified _YTDPSSLRK_ 0 0 0 ENSG00000106571|ENST00000395925|GLI3;GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant;ENST00000463680.5_1_9:3898613-3937138:-|nuORF;ENSG00000107249|ENST00000381971|GLIS3;ENSG00000074047|ENST00000361492|GLI2;GLI2|p.R1387Lfs*143|1|0.1|ENSG00000074047|chr2:120990074-120990074|G/-|frameshift_variant;nc|ENSG00000074047|P10070-1|GLI2;nc|ENSG00000074047|P10070-2|GLI2;ENST00000438299.5_1_2:121728002-121748192:+|nuORF;ENST00000467497.6_1_9:3855970-4118001:-|nuORF;ENST00000452692.5_1_2:121728002-121748192:+|nuORF;nc|ENSG00000074047|P10070-3|GLI2;nc|ENSG00000074047|P10070-4|GLI2;nc|ENSG00000107249|Q8NEA6|GLIS3;ENSG00000126603|ENST00000433375|GLIS2;GLIS2|p.G397Afs*127|2|0.49|ENSG00000126603|chr16:4337132-4337132|G/-|frameshift_variant;nc|ENSG00000074047|P10070|GLI2;nc|ENSG00000174332|Q8NBF1|GLIS1;GLIS1|p.H410Ifs*53|1|0.33|ENSG00000174332|chr1:53514755-53514755|G/-|frameshift_variant;ENSG00000174332|ENST00000628545|GLIS1;nc|ENSG00000111087|P08151-3|GLI1;nc|ENSG00000111087|P08151-2|GLI1;GLI1|p.N1082Tfs*7|1|0.25|ENSG00000111087|chr12:57471978-57471978|C/-|frameshift_variant;ENSG00000111087|ENST00000228682|GLI1;GLI1|p.P536Qfs*77|1|0.26|ENSG00000111087|chr12:57470342-57470342|C/-|frameshift_variant;GLI1|p.P870Lfs*76|1|0.47|ENSG00000111087|chr12:57471345-57471345|C/-|frameshift_variant;GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant ENSG00000106571|ENST00000395925|GLI3;nc|ENSG00000174332|Q8NBF1|GLIS1;nc|ENSG00000111087|P08151-3|GLI1 nc|ENSG00000111087|P08151-3|GLI1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2616577148438 2 533.780013 1065.54547 0.14094 7.5231E-05 -1.1947 -0.0006377 -1.0537 -0.00056247 533.7800454901735 23.616 0.45458 23.616 23.372 23.827 0 15 12 2 0 0 0 0.71913 1 4038 4038 20.415 8.7742 1 669520 55668 2605;6343;2391 36754 36775 54513 54513 0.015322510922715082 YTDPSSLRK 9 Unmodified _YTDPSSLRK_ 0 0 0 ENSG00000106571|ENST00000395925|GLI3;GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant;ENST00000463680.5_1_9:3898613-3937138:-|nuORF;ENSG00000107249|ENST00000381971|GLIS3;ENSG00000074047|ENST00000361492|GLI2;GLI2|p.R1387Lfs*143|1|0.1|ENSG00000074047|chr2:120990074-120990074|G/-|frameshift_variant;nc|ENSG00000074047|P10070-1|GLI2;nc|ENSG00000074047|P10070-2|GLI2;ENST00000438299.5_1_2:121728002-121748192:+|nuORF;ENST00000467497.6_1_9:3855970-4118001:-|nuORF;ENST00000452692.5_1_2:121728002-121748192:+|nuORF;nc|ENSG00000074047|P10070-3|GLI2;nc|ENSG00000074047|P10070-4|GLI2;nc|ENSG00000107249|Q8NEA6|GLIS3;ENSG00000126603|ENST00000433375|GLIS2;GLIS2|p.G397Afs*127|2|0.49|ENSG00000126603|chr16:4337132-4337132|G/-|frameshift_variant;nc|ENSG00000074047|P10070|GLI2;nc|ENSG00000174332|Q8NBF1|GLIS1;GLIS1|p.H410Ifs*53|1|0.33|ENSG00000174332|chr1:53514755-53514755|G/-|frameshift_variant;ENSG00000174332|ENST00000628545|GLIS1;nc|ENSG00000111087|P08151-3|GLI1;nc|ENSG00000111087|P08151-2|GLI1;GLI1|p.N1082Tfs*7|1|0.25|ENSG00000111087|chr12:57471978-57471978|C/-|frameshift_variant;ENSG00000111087|ENST00000228682|GLI1;GLI1|p.P536Qfs*77|1|0.26|ENSG00000111087|chr12:57470342-57470342|C/-|frameshift_variant;GLI1|p.P870Lfs*76|1|0.47|ENSG00000111087|chr12:57471345-57471345|C/-|frameshift_variant;GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant ENSG00000106571|ENST00000395925|GLI3;nc|ENSG00000174332|Q8NBF1|GLIS1;nc|ENSG00000111087|P08151-3|GLI1 nc|ENSG00000111087|P08151-3|GLI1 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 533.780013 1065.54547 1.2211 0.00065179 -2.6473 -0.0014131 -1.4262 -0.00076128 534.7814486083462 25.371 1.316 23.722 22.719 24.035 -1.6482 0.053455 -0.00031207 NaN 20.415 63 37 4 NaN NaN NaN NaN 0 NaN NaN 0 853350 55669 2605;6343;2391 36754 36775 0.015322510922715082 YTDQLSRY 8 Unmodified _YTDQLSRY_ 0 0 0 REV__CIITA|p.G655Pfs*32|1|0.4|ENSG00000179583|chr16:10907447-10907448|-/CC|frameshift_variant REV__CIITA|p.G655Pfs*32|1|0.4|ENSG00000179583|chr16:10907447-10907448|-/CC|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6926879882812 2 523.251089 1044.48762 0.18668 9.7678E-05 -0.47549 -0.0002488 -0.28882 -0.00015112 523.2508166249489 34.039 1.587 34.039 33.616 35.203 0 105 45 4 0 0 0 0.21714 2 6215 6215;6276 43.858 6.616 1 68901000 + 55670 13437 36755 36776 54514;54515 54514 -0.032840108331583906 YTDRETGKL 9 Unmodified _YTDRETGKL_ 0 0 0 ENSG00000089280|ENST00000254108|FUS;nc|ENSG00000089280|P35637-2|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF ENSG00000089280|ENST00000254108|FUS ENSG00000089280|ENST00000254108|FUS MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.28173828125 2 541.77747 1081.54039 -0.34811 -0.0001886 0.54495 0.00029524 0.19684 0.00010664 541.77771176847 23.345 0.4491 21.557 21.324 21.773 -1.7886 37 12 4 0 0 0 0.6202 1 3777 3777 33.445 14.188 1 12296000 55671 1759 36756 36777 54516 54516 0.0028794722968541464 YTDRLQFDRVE 11 Unmodified _YTDRLQFDRVE_ 0 0 0 REV__SORL1|p.K305T|1|0.17|ENSG00000137642|chr11:121497024-121497024|A/C|missense_variant REV__SORL1|p.K305T|1|0.17|ENSG00000137642|chr11:121497024-121497024|A/C|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.24298095703125 3 481.240524 1440.69974 NaN NaN NaN NaN NaN NaN NaN 47.278 1 44.409 43.909 44.909 -2.869 0 0 0 0.22632 1 8930 8930 1.4551 0 1 + 55672 24667 36757 36778 54517 54517 -0.002979642129957938 YTDSEPRATY 10 Unmodified _YTDSEPRATY_ 0 0 0 ENSG00000158480|ENST00000289431|SPATA2 ENSG00000158480|ENST00000289431|SPATA2 ENSG00000158480|ENST00000289431|SPATA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.2718505859375 2 601.769842 1201.52513 0.38429 0.00023126 0.29774 0.00017917 0.68203 0.00041043 601.7699443681859 34.555 0.88681 34.555 34.108 34.995 0 70 25 4 0 0 0 0.00012183 2 6340 6267;6340 128.58 21.638 1 7268600 55673 5167 36758 36779 54518;54519 54519 -0.06756964358191908 YTDSEPRATY 10 Unmodified _YTDSEPRATY_ 0 0 0 ENSG00000158480|ENST00000289431|SPATA2 ENSG00000158480|ENST00000289431|SPATA2 ENSG00000158480|ENST00000289431|SPATA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.2720947265625 2 601.769842 1201.52513 0.6227 0.00037472 0.19989 0.00012029 0.8226 0.00049501 601.7699651098603 37.338 0.86658 34.87 34.431 35.297 -2.4688 72 24 4 0 0 0 0.00012183 3 6918 6871;6918;6968 128.58 32.103 1 5174100 55674 5167 36758 36779 54520;54521;54522 54521 -0.06756964358191908 YTDSEPRATY 10 Unmodified _YTDSEPRATY_ 0 0 0 ENSG00000158480|ENST00000289431|SPATA2 ENSG00000158480|ENST00000289431|SPATA2 ENSG00000158480|ENST00000289431|SPATA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2719116210938 2 601.769842 1201.52513 0.44599 0.00026838 0.44524 0.00026793 0.89123 0.00053631 601.7700260039202 37.234 0.85952 34.886 34.516 35.376 -2.3479 70 24 4 0 0 0 0.00012183 2 6608 6546;6608 128.58 21.638 1 5866400 55675 5167 36758 36779 54523;54524 54524 -0.06756964358191908 YTDSEPRATY 10 Unmodified _YTDSEPRATY_ 0 0 0 ENSG00000158480|ENST00000289431|SPATA2 ENSG00000158480|ENST00000289431|SPATA2 ENSG00000158480|ENST00000289431|SPATA2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2718505859375 2 601.769842 1201.52513 0.31689 0.0001907 0.49182 0.00029596 0.80871 0.00048666 601.7700492710817 37.185 0.90965 34.848 34.417 35.327 -2.3375 74 25 4 0 0 0 2.2255E-05 3 6582 6533;6582;6631 139.38 32.438 1 5468300 55676 5167 36758 36779 54525;54526;54527 54526 -0.06756964358191908 YTDSLQAWGY 10 Unmodified _YTDSLQAWGY_ 0 0 0 REV__nc|ENSG00000075340|P35612-3|ADD2 REV__nc|ENSG00000075340|P35612-3|ADD2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.2718505859375 2 602.269478 1202.5244 NaN NaN NaN NaN NaN NaN NaN 37.556 1 35.208 34.708 35.708 -2.3479 0 0 0 0.22569 1 6656 6656 15.847 3.3156 1 + 55677 23951 36759 36780 54528 54528 -0.0687575900722095 YTDTYTEA 8 Unmodified _YTDTYTEA_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 481.7775573730469 2 482.20073 962.386907 NaN NaN NaN NaN NaN NaN NaN 61.232 1 58.287 57.787 58.787 -2.9452 0 0 0 0.22684 1 11799 11799 0.25148 0 1 55678 5189 36760 36781 54529 54529 -0.09579087606653047 YTDTYTEAY 9 Unmodified _YTDTYTEAY_ 0 0 0 nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON nc|ENSG00000159140|P18583-6|SON nc|ENSG00000159140|P18583-6|SON MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1128.4635009765625 1 1126.45751 1125.45024 0.57729 0.00065029 -1.1362 -0.0012799 -0.55893 -0.00062961 1126.456307624253 68.946 0.68899 65.41 65.074 65.763 -3.5362 47 18 3 0 0 0 0.22334 1 13026 13026 36.044 16.605 1 21286000 55679 5189 36761 36782 54530 54530 -0.10747146889411852 YTEAIRELS 9 Unmodified _YTEAIRELS_ 0 0 0 tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1 tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1 tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.266845703125 2 541.279846 1080.54514 0.35569 0.00019253 0.17428 9.4333E-05 0.52997 0.00028686 541.2798883192773 31.624 0.32188 29.597 29.372 29.694 -2.0264 11 8 2 0 0 0 0.63318 1 5419 5419 0.40827 0 1 553590 55680 26035 36762 36783 54531 54531 0.008088313724329055 YTEEDAASY 9 Unmodified _YTEEDAASY_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 1049.412353515625 1 1048.41056 1047.40329 0.17682 0.00018538 -0.29309 -0.00030728 -0.11626 -0.00012189 1048.4101212961086 42.429 0.89874 39.778 39.464 40.363 -2.651 57 25 3 0 0 0 0.042631 1 7617 7617 74.423 33.974 1 7118100 55681 2505 36763 36784 54532 54532 -0.11852006440562945 YTEEDAASY 9 Unmodified _YTEEDAASY_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1049.412841796875 1 1048.41056 1047.40329 0.10251 0.00010747 -0.26054 -0.00027316 -0.15804 -0.00016569 1048.4102328201434 42.358 0.91233 39.752 39.468 40.38 -2.606 64 25 3 0 0 0 0.060164 1 7612 7612 67.344 26.895 1 7111300 55682 2505 36763 36784 54533 54533 -0.11852006440562945 YTEEDAASY 9 Unmodified _YTEEDAASY_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 1 1048.41056 1047.40329 0.668 0.00070033 -0.86544 -0.00090734 -0.19744 -0.000207 1048.4095015527082 39.503 0.72896 39.503 39.201 39.93 0 -0.18759 -0.00053339 NaN 74.423 52 20 4 NaN NaN NaN NaN 0 NaN NaN 0 7162200 55683 2505 36763 36784 -0.11852006440562945 YTEEDAASY 9 Unmodified _YTEEDAASY_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 1 1048.41056 1047.40329 -0.32106 -0.00033661 0.068991 7.2331E-05 -0.25207 -0.00026428 1048.4104840020266 42.45 0.71119 39.731 39.52 40.231 -2.7191 0.039796 0.00044627 NaN 74.423 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7722500 55684 2505 36763 36784 -0.11852006440562945 YTEHATVNI 9 Unmodified _YTEHATVNI_ 0 0 0 ENST00000603993.1_1_13:111535584-111535650:-|nuORF ENST00000603993.1_1_13:111535584-111535650:-|nuORF ENST00000603993.1_1_13:111535584-111535650:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6917724609375 2 524.258914 1046.50327 0.47005 0.00024643 0.031025 1.6265E-05 0.50107 0.00026269 524.2587392945842 104.87 0.38103 104.87 104.76 105.14 0 13 10 2 0 0 0 0.80521 1 20647 20647 6.7232 0.36906 1 964260 55685 11726 36764 36785 54534 54534 -0.018117243160759244 YTELEAIMY 9 Oxidation (M) _YTELEAIM(Oxidation (M))Y_ YTELEAIM(1)Y YTELEAIM(74)Y 0 0 1 nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF nc|ENSG00000133835|P51659-2|HSD17B4 nc|ENSG00000133835|P51659-2|HSD17B4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3200073242188 2 574.76264 1147.51073 0.28625 0.00016453 -0.20519 -0.00011793 0.081062 4.6591E-05 574.7626656291444 124.18 0.94352 124.18 123.67 124.61 0 82 26 4 0 0 0 0.043162 1 24461 24461 74.216 72.524 1 31659000 55686 12333 36765 36786 54535 54535 115 -0.057127528306864406 YTELEAIMY 9 Oxidation (M) _YTELEAIM(Oxidation (M))Y_ YTELEAIM(1)Y YTELEAIM(44)Y 0 0 1 nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF nc|ENSG00000133835|P51659-2|HSD17B4 nc|ENSG00000133835|P51659-2|HSD17B4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3392944335938 2 574.76264 1147.51073 -0.0021942 -1.2611E-06 0.20847 0.00011982 0.20627 0.00011856 574.7627790970424 129.2 0.9297 124.57 124.05 124.98 -4.6292 73 26 4 0 0 0 0.14832 1 25466 25466 44.407 17.523 1 20580000 55687 12333 36765 36786 54536 54536 115 -0.057127528306864406 YTELEAIMY 9 Oxidation (M) _YTELEAIM(Oxidation (M))Y_ 0 0 1 nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF nc|ENSG00000133835|P51659-2|HSD17B4 nc|ENSG00000133835|P51659-2|HSD17B4 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 574.76264 1147.51073 0.15769 9.0632E-05 0.15277 8.7806E-05 0.31046 0.00017844 574.7627284314736 129.29 1.0111 124.47 124.02 125.03 -4.817 0.027208 0.00011645 NaN 74.216 70 28 3 NaN NaN NaN NaN 0 NaN NaN 0 12676000 55688 12333 36765 36786 115 -0.057127528306864406 YTELGMYYH 9 Unmodified _YTELGMYYH_ 0 0 0 GPR22|p.L353*|3|0.31|ENSG00000172209|chr7:107475113-107475113|T/-|frameshift_variant;ENSG00000172209|ENST00000304402|GPR22 GPR22|p.L353*|3|0.31|ENSG00000172209|chr7:107475113-107475113|T/-|frameshift_variant GPR22|p.L353*|3|0.31|ENSG00000172209|chr7:107475113-107475113|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 393.2906494140625 3 392.839192 1175.49575 0.053076 2.085E-05 0.81736 0.00032109 0.87044 0.00034194 392.84125603220525 38.174 0.88845 35.732 35.412 36.301 -2.4419 143 24 7 0 0 0 0.8825 1 6729 6729 2.7352 0.45242 1 22773000 55689 6199 36766 36787 54537 54537 -0.08498199908012793 YTENKWQGY 9 Unmodified _YTENKWQGY_ 0 0 0 REV__ENSG00000125676|ENST00000245838|THOC2 REV__ENSG00000125676|ENST00000245838|THOC2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 595.13818359375 2 594.769645 1187.52474 -0.030378 -1.8068E-05 0.43747 0.0002602 0.40709 0.00024213 594.7698610016398 43.852 0.73348 41.104 40.905 41.638 -2.7475 32 20 2 0 0 0 0.87888 1 7913 7913 2.0598 0 1 784930 + 55690 15822 36767 36788 54538 54538 -0.06152339287382347 YTEPDEDHF 9 Unmodified _YTEPDEDHF_ 0 0 0 REV__sp|P16767|UL36_HCMVAUncharacterizedproteinUL36OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL36PE=3SV=1 REV__sp|P16767|UL36_HCMVAUncharacterizedproteinUL36OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL36PE=3SV=1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3184204101562 2 576.727643 1151.44073 0.29296 0.00016896 4.4035 0.0025396 4.6964 0.0027086 576.7298691405776 124.16 0.52399 124.16 123.81 124.34 0 20 14 2 0 0 0 0.8319 1 24512 24512 12.532 6.1774 1 2297300 + 55691 24680 36768 36789 54539 54539 -0.12892915174938935 YTERAVFRY 9 Unmodified _YTERAVFRY_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 602.2875366210938 2 602.809105 1203.60366 0.45871 0.00027651 -0.26535 -0.00015996 0.19336 0.00011656 602.8090041763943 73.99 0.59273 70.396 70.083 70.676 -3.594 25 16 2 0 0 0 0.77734 1 14055 14055 19.257 9.1831 1 2801900 55692 2220 36769 36790 54540 54540 0.009999327375680878 YTESEQGLDY 10 Unmodified _YTESEQGLDY_ 0 0 0 ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant;nc|ENSG00000130023|Q5T6L9-2|ERMARD;nc|ENSG00000130023|Q5T6L9-3|ERMARD;ENSG00000130023|ENST00000366773|ERMARD;ENST00000592580.5_1_6:170151753-170155539:+|nuORF ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 602.282958984375 2 602.753858 1203.49316 0.89573 0.0005399 -0.35561 -0.00021435 0.54011 0.00032555 602.7536817752664 70.539 0.66924 67.29 67.001 67.67 -3.2492 30 18 2 0 0 0 0.36162 2 13681 13681;13683 24.021 11.907 1 3864400 55693 3577 36770 36791 54541;54542 54541 -0.10044376831979207 YTESEQGLDY 10 Unmodified _YTESEQGLDY_ 0 0 0 ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant;nc|ENSG00000130023|Q5T6L9-2|ERMARD;nc|ENSG00000130023|Q5T6L9-3|ERMARD;ENSG00000130023|ENST00000366773|ERMARD;ENST00000592580.5_1_6:170151753-170155539:+|nuORF ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant ERMARD|p.Q439Tfs*6|1|0.4|ENSG00000130023|chr6:169773393-169773394|-/A|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 602.753858 1203.49316 0.69749 0.00042041 -0.28267 -0.00017038 0.41481 0.00025003 602.7537815847065 70.985 0.59148 67.405 66.982 67.574 -3.5798 0.057741 5.5419E-05 NaN 24.021 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2691100 55694 3577 36770 36791 -0.10044376831979207 YTETGPTNPL 10 Unmodified _YTETGPTNPL_ 0 0 0 ENST00000428388.6_1_6:32135427-32135845:+|nuORF;ENST00000489721.1_1_6:32135321-32135845:+|nuORF ENST00000428388.6_1_6:32135427-32135845:+|nuORF ENST00000428388.6_1_6:32135427-32135845:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7684326171875 2 546.764029 1091.5135 0.019142 1.0466E-05 0.38048 0.00020803 0.39962 0.0002185 546.764139145607 61.689 1.6469 61.689 61.047 62.694 0 130 47 4 0 0 0 0.69553 1 11753 11753 11.64 0.81637 1 31724000 55695 9752 36771 36792 54543 54543 -0.02859161381525155 YTFFINRWY 9 Unmodified _YTFFINRWY_ 0 0 0 REV__tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1 REV__tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2171325683594 3 437.216991 1308.62914 NaN NaN NaN NaN NaN NaN NaN 65.56 1 62.277 61.777 62.777 -3.2832 0 0 0 0.23508 1 12328 12328 4.897 0.18109 1 + 55696 25348 36772 36793 54544 54544 -0.012825927399944703 YTFLIILLL 9 Unmodified _YTFLIILLL_ 0 0 0 tr|U7T6L6|U7T6L6_FUSNUAI-2EfamilytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00289PE=4SV=1 tr|U7T6L6|U7T6L6_FUSNUAI-2EfamilytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00289PE=4SV=1 tr|U7T6L6|U7T6L6_FUSNUAI-2EfamilytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00289PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 554.8387451171875 2 554.854461 1107.69437 NaN NaN NaN NaN NaN NaN NaN 9.9281 1 9.9281 9.4281 10.428 0 0 0 0 0.23508 1 1200 1200 0 0 1 55697 26498 36773 36794 54545 54545 0.1448300873316839 YTFWMSACL 9 Unmodified _YTFWMSACL_ 0 0 0 REV__nc|ENSG00000161091|Q6NUT3-3|MFSD12 REV__nc|ENSG00000161091|Q6NUT3-3|MFSD12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 561.6171875 2 561.243363 1120.47217 0.087832 4.9295E-05 -0.5894 -0.0003308 -0.50157 -0.0002815 561.2430262900525 144.81 1.0422 139.74 139.31 140.36 -5.0671 75 29 4 0 0 0 0.86532 1 28087 28087 4.756 0 1 41093000 + 55698 24122 36774 36795 54546 54546 -0.08324336946202493 YTGKIAGY 8 Unmodified _YTGKIAGY_ 0 0 0 REV__tr|U7SZG3|U7SZG3_FUSNUPutativemembraneproteininsertionefficiencyfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00742PE=3SV=1 REV__tr|U7SZG3|U7SZG3_FUSNUPutativemembraneproteininsertionefficiencyfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00742PE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.2294006347656 2 436.729261 871.443968 0.047897 2.0918E-05 -0.42038 -0.00018359 -0.37249 -0.00016268 436.72904856131953 37.385 3.7576 35.037 33.898 37.655 -2.3479 187 107 3 0 0 0 8448 1 6443 6443 0.12286 0 1 3730100 + 55699 25247 36775 36796 54547 54547 0.00310424460383274 YTGLTGVY 8 Unmodified _YTGLTGVY_ 0 0 0 REV__CLMP|p.H20Y|1|0.15|ENSG00000166250|chr11:123097923-123097923|G/A|missense_variant REV__CLMP|p.H20Y|1|0.15|ENSG00000166250|chr11:123097923-123097923|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2192077636719 2 437.221268 872.427984 NaN NaN NaN NaN NaN NaN NaN 36.488 1 34.15 33.65 34.65 -2.3375 0 0 0 0.22834 1 6440 6440 0.68139 0.55853 1 + 55700 13449 36776 36797 54548 54548 -0.013332817765103755 YTGNESMGCSC 11 Unmodified _YTGNESMGCSC_ 0 0 0 ENST00000369063.7_1_6:107040122-107067091:-|nuORF ENST00000369063.7_1_6:107040122-107067091:-|nuORF ENST00000369063.7_1_6:107040122-107067091:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3258666992188 2 576.193742 1150.37293 0.17385 0.00010017 -3.4195 -0.0019703 -3.2457 -0.0018701 576.1920269761104 129.37 0.17668 124.63 124.5 124.68 -4.7408 6 4 2 0 0 0 0.88867 1 24880 24880 0.00056442 0 1 3234300 55701 9108 36777 36798 54549 54549 -0.1962414769325278 YTGQHYDY 8 Unmodified _YTGQHYDY_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.677978515625 2 523.714339 1045.41412 NaN NaN NaN NaN NaN NaN NaN 26.253 1 26.253 25.753 26.753 0 0 0 0 0.21486 1 4589 4589 10.183 0.83596 1 + 55702 15443 36778 36799 54550 54550 -0.10676559275611908 YTIELENPN 9 Unmodified _YTIELENPN_ 0 0 0 CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.T718Pfs*5|1|0.11|ENSG00000143702|chr1:243165808-243165808|T/-|frameshift_variant;ENST00000502249.6_1_4:119401524-119435218:+|nuORF CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7684326171875 2 546.764029 1091.5135 0.25224 0.00013791 -0.039739 -2.1728E-05 0.2125 0.00011619 546.7639400165134 65.299 1.5404 61.841 61.225 62.765 -3.4581 133 43 4 0 0 0 0.55979 1 12122 12122 15.847 1.0089 1 39296000 55703 490 36779 36800 54551 54551 -0.028591613815024175 YTIELENPN 9 Unmodified _YTIELENPN_ 0 0 0 CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.T718Pfs*5|1|0.11|ENSG00000143702|chr1:243165808-243165808|T/-|frameshift_variant;ENST00000502249.6_1_4:119401524-119435218:+|nuORF CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7815551757812 2 546.764029 1091.5135 0.38004 0.00020779 -0.11198 -6.1226E-05 0.26806 0.00014657 546.7638840076986 65.071 1.6517 61.788 61.139 62.791 -3.2832 139 47 4 0 0 0 0.6329 1 12118 12118 10.824 2.9138 1 31852000 55704 490 36779 36800 54552 54552 -0.028591613815024175 YTIFFRIY 8 Unmodified _YTIFFRIY_ 0 0 0 REV__ENST00000522359.2_1_11:61630446-61630602:+|nuORF REV__ENST00000522359.2_1_11:61630446-61630602:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2056884765625 3 374.870932 1121.59097 0.10486 3.9308E-05 -0.68524 -0.00025688 -0.58038 -0.00021757 374.8706251200292 83.07 0.68537 79.197 78.883 79.569 -3.8736 43 19 3 0 0 0 0.72935 1 15749 15749 10.074 0 1 2308200 + 55705 16231 36780 36801 54553 54553 0.035035213453284086 YTKHTATV 8 Unmodified _YTKHTATV_ 0 0 0 REV__ENSG00000181004|ENST00000314218|BBS12 REV__ENSG00000181004|ENST00000314218|BBS12 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2281799316406 2 460.745442 919.476331 -0.53419 -0.00024613 -1.7516 -0.00080705 -2.2858 -0.0010532 460.74571630275057 22.689 0.34548 20.901 20.713 21.059 -1.7886 15 9 2 0 0 0 0.99312 1 3615 3615 14.838 1.3304 1 417730 + 55706 18711 36781 36802 54554 54554 0.013372118633810715 YTKPQLTE 8 Unmodified _YTKPQLTE_ 0 0 0 REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1 REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2574157714844 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 172.3 1 167.42 166.92 167.92 -4.881 0 0 0 0.21486 1 34191 34191 10.074 0 1 + 55707 17869 36782 36803 54555 54555 0.012100613149982564 YTLFIRLKG 9 Unmodified _YTLFIRLKG_ 0 0 0 REV__nc|ENSG859|P60507|ERVFC1 REV__nc|ENSG859|P60507|ERVFC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 555.8548583984375 2 555.837134 1109.65972 NaN NaN NaN NaN NaN NaN NaN 9.772 1 8.7374 8.2374 9.2374 -1.0347 0 0 0 0.23508 1 1017 1017 0 0 1 + 55708 24336 36783 36804 54556 54556 0.10927185645005011 YTLGLHAGP 9 Unmodified _YTLGLHAGP_ 0 0 0 ENSG00000144120|ENST00000272521|TMEM177 ENSG00000144120|ENST00000272521|TMEM177 ENSG00000144120|ENST00000272521|TMEM177 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 465.2493896484375 2 464.747985 927.481417 0.15013 6.9774E-05 -0.13155 -6.1137E-05 0.018583 8.6364E-06 464.74782734701677 60.211 0.60175 56.987 56.784 57.386 -3.2237 29 16 2 0 0 0 0.44262 1 11264 11264 23.148 1.4018 1 1361500 55709 4542 36784 36805 54557 54557 0.01477515725991907 YTLKICTS 8 Unmodified _YTLKICTS_ 0 0 0 MROH9|p.L759*|1|0.19|ENSG00000117501|chr1:171025412-171025412|T/-|frameshift_variant;MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant;ENSG00000117501|ENST00000367759|MROH9 MROH9|p.L759*|1|0.19|ENSG00000117501|chr1:171025412-171025412|T/-|frameshift_variant MROH9|p.L759*|1|0.19|ENSG00000117501|chr1:171025412-171025412|T/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.16510009765625 3 310.165128 927.473554 NaN NaN NaN NaN NaN NaN NaN 141.56 1 136.91 136.41 137.41 -4.6493 0 0 0 0.2386 1 27964 27964 0.12286 0 1 55710 2988 36785 36806 54558 54558 0.00691620414204408 YTLTLINSRA 10 Unmodified _YTLTLINSRA_ 0 0 0 REV__ENST00000436471.2_1_17:20385129-20386047:-|nuORF REV__ENST00000436471.2_1_17:20385129-20386047:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3233642578125 2 576.324588 1150.63462 NaN NaN NaN NaN NaN NaN NaN 147.16 1 142.47 141.97 142.97 -4.6868 0 0 0 2.8426 1 29191 29191 0.84494 0 1 + 55711 21671 36786 36807 54559 54559 0.06533086051808823 YTMKKFLI 8 Unmodified _YTMKKFLI_ 0 0 0 nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ADCY10|p.N1597Tfs*4|1|0.07|ENSG00000143199|chr1:167809721-167809721|T/-|frameshift_variant;ENSG00000143199|ENST00000367851|ADCY10;ADCY10|p.W654*|1|0.29|ENSG00000143199|chr1:167856362-167856374|CTCCATAAATCTC/-|frameshift_variant;ADCY10|p.N743Tfs*33|1|0.32|ENSG00000143199|chr1:167854433-167854433|T/-|frameshift_variant;ADCY10|p.P1022Sfs*2|1|0.28|ENSG00000143199|chr1:167837262-167837263|-/A|frameshift_variant nc|ENSG00000143199|Q96PN6-4|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2821044921875 2 522.301539 1042.58852 NaN NaN NaN NaN NaN NaN NaN 28.152 1 26.195 25.695 26.695 -1.9561 0 0 0 0.21486 1 5026 5026 5.7604 0 1 55712 70 36787 36808 54560 54560 0.06893349616007072 YTMQESYRELD 11 Unmodified _YTMQESYRELD_ 0 0 0 REV__CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant REV__CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 717.8124389648438 2 717.813924 1433.61329 NaN NaN NaN NaN NaN NaN NaN 168.02 1 163.23 162.73 163.73 -4.7898 0 0 0 0.1773 1 33937 33937 2.732 0 1 + 55713 13434 36788 36809 54561 54561 -0.08616711829881751 YTNKLENLE 9 Unmodified _YTNKLENLE_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|34|1|sense L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|34|1|sense L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|34|1|sense MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2116394042969 3 375.192511 1122.5557 NaN NaN NaN NaN NaN NaN NaN 86.642 1 86.642 86.142 87.142 0 0 0 0 0.23508 1 16910 16910 3.8763 1.5936 1 55714 12046 36789 36810 54562 54562 -0.0006718597312556085 YTNNKVQL 8 Unmodified _YTNNKVQL_ 0 0 0 REV__ENST00000462410.5_1_1:211533229-211533703:+|nuORF REV__ENST00000462410.5_1_1:211533229-211533703:+|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2642822265625 2 490.263999 978.513445 0.60941 0.00029877 -0.67446 -0.00033066 -0.065051 -3.1892E-05 490.26380189390966 80.02 0.70186 80.02 79.545 80.246 0 25 19 2 0 0 0 0.66265 1 15597 15597 18.135 1.1927 1 1345300 + 55715 21903 36790 36811 54563 54563 0.023328834091330464 YTPDSDNRGGY 11 Unmodified _YTPDSDNRGGY_ 0 0 0 REV__LPP|p.C364Lfs*29|1|0.29|ENSG00000145012|chr3:188609815-188609816|-/C|frameshift_variant REV__LPP|p.C364Lfs*29|1|0.29|ENSG00000145012|chr3:188609815-188609816|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7620239257812 2 622.762549 1243.51054 NaN NaN NaN NaN NaN NaN NaN 63.387 1 60.389 59.889 60.889 -2.9975 0 0 0 0.22943 1 12246 12246 8.7454 0 1 + 55716 16814 36791 36812 54564 54564 -0.10147036506327822 YTPTPRFRL 9 Unmodified _YTPTPRFRL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.32177734375 2 575.822015 1149.62948 -1.599 -0.00092075 -1.417 -0.00081596 -3.016 -0.0017367 575.821255346208 14.911 0.26932 13.7 13.583 13.852 -1.2106 12 7 3 0 0 0 0.75112 1 2025 2025 3.9444 0 1 1734200 55717 1701 36792 36813 54565 54565 0.060648269798548426 YTPTTTTTA 9 Unmodified _YTPTTTTTA_ 0 0 0 ENST00000397581.6_1_9:14313838-14313937:-|nuORF ENST00000397581.6_1_9:14313838-14313937:-|nuORF ENST00000397581.6_1_9:14313838-14313937:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 478.7316589355469 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 8.9822 1 8.9822 8.4822 9.4822 0 0 0 0 0.19635 1 994 994 0 0 1 55718 9469 36793 36814 54566 54566 -0.029665218186323727 YTPVEMYSSC 10 Unmodified _YTPVEMYSSC_ 0 0 0 REV__ENSG00000162511|ENST00000294507|LAPTM5 REV__ENSG00000162511|ENST00000294507|LAPTM5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2643432617188 2 590.238475 1178.4624 NaN NaN NaN NaN NaN NaN NaN 19.657 1 19.657 19.157 20.157 0 0 0 0 0.22588 1 3221 3221 9.3831 0.63772 1 + 55719 17502 36794 36815 54567 54567 -0.1196956974222303 YTQFLLSLIYI 11 Unmodified _YTQFLLSLIYI_ 0 0 0 ENST00000254616.10_1_11:6503555-6503747:+|nuORF ENST00000254616.10_1_11:6503555-6503747:+|nuORF ENST00000254616.10_1_11:6503555-6503747:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 687.39111328125 2 687.389396 1372.76424 NaN NaN NaN NaN NaN NaN NaN 170.18 1 165.25 164.75 165.75 -4.9295 0 0 0 0.22632 1 33640 33640 1.4551 1.3441 1 55720 8244 36795 36816 54568 54568 0.09276842611120628 YTQIEVEY 8 Unmodified _YTQIEVEY_ 0 0 0 REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.278076171875 2 522.747847 1043.48114 -0.59946 -0.00031336 0.78312 0.00040937 0.18366 9.601E-05 522.7481577167598 106.85 0.73129 102.58 102.22 102.95 -4.2638 33 20 2 0 0 0 0.72565 1 21061 21061 26.884 0 1 3786900 + 55721 13369 36796 36817 54569 54569 -0.03885948784522952 YTQIEVEY 8 Unmodified _YTQIEVEY_ 0 0 0 REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant REV__CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.27978515625 2 522.747847 1043.48114 -0.66875 -0.00034959 1.0976 0.00057377 0.42885 0.00022418 522.7483596613747 106.88 0.62109 102.47 102.2 102.82 -4.4121 31 17 2 0 0 0 0.47312 1 20543 20543 37.974 0 1 3688200 + 55722 13369 36796 36817 54570 54570 -0.03885948784522952 YTREGVRY 8 Unmodified _YTREGVRY_ 0 0 0 ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1;ENST00000466609.1_1_3:98377983-98378526:+|nuORF ENST00000518683.5_1_8:87410815-87460532:+|nuORF ENST00000518683.5_1_8:87410815-87460532:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2697143554688 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 28.534 1 26.538 26.038 27.038 -1.9962 0 0 0 0.22684 1 4821 4821 0.68139 0 1 55723 3251 36797 36818 54571 54571 3.4016406743830885E-05 YTRVTALRDWI 11 Unmodified _YTRVTALRDWI_ 0 0 0 ENSG00000087128|ENST00000305363|TMPRSS11E ENSG00000087128|ENST00000305363|TMPRSS11E ENSG00000087128|ENST00000305363|TMPRSS11E MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 465.2464599609375 3 465.257738 1392.75138 NaN NaN NaN NaN NaN NaN NaN 78.484 1 74.679 74.179 75.179 -3.8048 0 0 0 0.22632 1 14886 14886 3.0723 0.34026 1 55724 1706 36798 36819 54572 54572 0.07071824271565674 YTSPGTQKY 9 Unmodified _YTSPGTQKY_ 0 0 0 TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant;ENSG00000064313|ENST00000378164|TAF2;TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.270263671875 2 522.753464 1043.49238 0.25652 0.0001341 0.034731 1.8156E-05 0.29125 0.00015225 522.7533936892582 26.436 1.2652 26.436 25.985 27.25 0 86 36 4 0 0 0 0.12542 1 4635 4635 65.235 11.659 1 17829000 55725 1332 36799 36820 54573 54573 -0.027631266903881624 YTSPGTQKY 9 Unmodified _YTSPGTQKY_ 0 0 0 TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant;ENSG00000064313|ENST00000378164|TAF2;TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2697143554688 2 522.753464 1043.49238 0.38725 0.00020244 -0.5761 -0.00030116 -0.18885 -9.8721E-05 522.7531287557395 28.5 1.0809 26.503 26.064 27.145 -1.9962 77 30 3 0 0 0 3.7335E-10 1 4823 4823 163.04 84.887 1 16576000 55726 1332 36799 36820 54574 54574 -0.027631266903881624 YTTDRVMTV 9 Unmodified _YTTDRVMTV_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 543.7698974609375 2 543.268424 1084.5223 0.0073611 3.999E-06 -0.15623 -8.4875E-05 -0.14887 -8.0876E-05 543.2683469900988 66.63 0.70385 66.63 66.274 66.978 0 26 19 2 0 0 0 0.034893 2 12862 12862;12912 78.06 41.933 1 2758100 55727 7288 36800 36821 54575;54576 54575 -0.016585110166943196 YTTDRVMTV 9 Unmodified _YTTDRVMTV_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 543.7701416015625 2 543.268424 1084.5223 0.12965 7.0437E-05 0.051164 2.7796E-05 0.18082 9.8233E-05 543.2684166880333 69.919 0.70246 66.739 66.368 67.071 -3.1796 35 19 2 0 0 0 0.024872 2 13612 13559;13612 87.258 51.131 1 5033000 55728 7288 36800 36821 54577;54578 54578 -0.016585110166943196 YTTDRVMTV 9 Unmodified _YTTDRVMTV_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.7697143554688 2 543.268424 1084.5223 0.39858 0.00021653 -0.38357 -0.00020838 0.01501 8.1547E-06 543.2681838001998 70.259 0.63525 66.68 66.347 66.982 -3.5798 37 17 3 0 0 0 0.015383 3 13262 13221;13262;13280 96.936 53.077 1 3541600 55729 7288 36800 36821 54579;54580;54581 54580 -0.016585110166943196 YTTDRVMTV 9 Unmodified _YTTDRVMTV_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.7963256835938 2 543.268424 1084.5223 0.43118 0.00023424 -0.62934 -0.0003419 -0.19816 -0.00010766 543.2680707343872 70.167 0.76928 66.7 66.254 67.023 -3.467 36 21 2 0 0 0 0.034893 5 13255 13238;13255;13287;13288;13336 78.06 41.933 1 2753200 55730 7288 36800 36821 54582;54583;54584;54585;54586 54583 -0.016585110166943196 YTTLDHKLRY 10 Unmodified _YTTLDHKLRY_ 0 0 0 REV__COBL|p.G704D|1|0.31|ENSG00000106078|chr7:51028985-51028985|C/T|missense_variant REV__COBL|p.G704D|1|0.31|ENSG00000106078|chr7:51028985-51028985|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2358093261719 3 437.234822 1308.68264 NaN NaN NaN NaN NaN NaN NaN 63.547 1 63.547 63.047 64.047 0 0 0 0 0.22588 1 12220 12220 6.6304 3.8952 1 + 55731 13471 36801 36822 54587 54587 0.040641599718583166 YTTNFGEKLF 10 Unmodified _YTTNFGEKLF_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant;FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 407.2044982910156 3 407.20464 1218.59209 NaN NaN NaN NaN NaN NaN NaN 133.74 1 128.93 128.43 129.43 -4.8175 0 0 0 2.8426 1 25744 25744 0.043787 0 1 55732 7191 36802 36823 54588 54588 -0.008463090764280423 YTTRSLFQY 9 Unmodified _YTTRSLFQY_ 0 0 0 ENSG00000111817|ENST00000644252|DSE;DSE|p.M273T|1|0.18|ENSG00000111817|chr6:116431101-116431101|T/C|missense_variant;ENST00000436315.2_1_9:71224362-71225004:+|nuORF ENSG00000111817|ENST00000644252|DSE ENSG00000111817|ENST00000644252|DSE MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2550048828125 2 589.795663 1177.57677 NaN NaN NaN NaN NaN NaN NaN 61.298 1 61.298 60.798 61.798 0 0 0 0 0.21848 1 11763 11763 18.135 9.5417 1 55733 2650 36803 36824 54589 54589 -0.004911758736170668 YTTSQIPGSQY 11 Unmodified _YTTSQIPGSQY_ 0 0 0 REV__nc|ENSG00000143569|Q14157-4|UBAP2L REV__nc|ENSG00000143569|Q14157-4|UBAP2L MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.77587890625 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 89.164 1 85.371 84.871 85.871 -3.7926 0 0 0 0.22765 1 17445 17445 10.151 1.4052 1 + 55734 16738 36804 36825 54590 54590 -0.039961048070381366 YTTTEVTSE 9 Unmodified _YTTTEVTSE_ 0 0 0 REV__ENSG00000205592|ENST00000454784|MUC19 REV__ENSG00000205592|ENST00000454784|MUC19 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 344.2872314453125 3 344.157355 1029.45024 NaN NaN NaN NaN NaN NaN NaN 8.6606 1 8.6606 8.1606 9.1606 0 0 0 0 0.23508 1 929 929 0 0 1 + 55735 19595 36805 36826 54591 54591 -0.06331146889397132 YTVFKMCIH 9 Unmodified _YTVFKMCIH_ 0 0 0 ENST00000296048.10_1_3:148714208-148714545:+|nuORF ENST00000296048.10_1_3:148714208-148714545:+|nuORF ENST00000296048.10_1_3:148714208-148714545:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 381.2117614746094 3 381.189279 1140.54601 NaN NaN NaN NaN NaN NaN NaN 60.109 1 57.176 56.676 57.676 -2.9333 0 0 0 0.19657 1 11560 11560 4.897 4.8237 1 55736 8505 36806 36827 54592 54592 -0.01864368783867576 YTWKKDRMWRK 11 Unmodified _YTWKKDRMWRK_ 0 0 0 CON__Q2KIG3 CON__Q2KIG3 CON__Q2KIG3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2761840820312 3 533.285522 1596.83474 0.4865 0.00025945 -2.8488 -0.0015192 -2.3623 -0.0012598 533.2842827969249 145.27 0.103 140.21 140.15 140.25 -5.0671 4 2 2 0 0 0 0.66298 1 28054 28054 0.094841 0.0086872 1 2000600 + 55737 685 36807 36828 54593 54593 0.060192374477310295 YTWLDNALV 9 Unmodified _YTWLDNALV_ 0 0 0 nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP nc|ENSG00000100991|Q8TEL6-2|TRPC4AP MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7803955078125 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 64.968 1 61.51 61.01 62.01 -3.4581 0 0 0 0.21065 1 12149 12149 20.454 4.6064 1 55738 2029 36808 36829 54594 54594 0.0013803672336507589 YTYIQEHK 8 Unmodified _YTYIQEHK_ 0 0 0 REV__MYO9A|p.K174Q|1|0.26|ENSG00000066933|chr15:72046044-72046044|T/G|missense_variant REV__MYO9A|p.K174Q|1|0.26|ENSG00000066933|chr15:72046044-72046044|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2691650390625 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 25.374 1 25.374 24.874 25.874 0 0 0 0 0.2386 1 4400 4400 0.62683 0.21856 1 + 55739 23905 36809 36830 54595 54595 -0.01303133936426093 YTYIQEHK 8 Unmodified _YTYIQEHK_ 0 0 0 REV__MYO9A|p.K174Q|1|0.26|ENSG00000066933|chr15:72046044-72046044|T/G|missense_variant REV__MYO9A|p.K174Q|1|0.26|ENSG00000066933|chr15:72046044-72046044|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2677612304688 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 167.75 1 162.96 162.46 163.46 -4.7898 0 0 0 0.2074 1 33865 33865 19.439 4.8573 1 + 55740 23905 36809 36830 54596 54596 -0.01303133936426093 YTYIQEHK 8 Unmodified _YTYIQEHK_ 0 0 0 REV__MYO9A|p.K174Q|1|0.26|ENSG00000066933|chr15:72046044-72046044|T/G|missense_variant REV__MYO9A|p.K174Q|1|0.26|ENSG00000066933|chr15:72046044-72046044|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2700805664062 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 167.69 1 162.74 162.24 163.24 -4.948 0 0 0 0.21039 1 33012 33012 16.942 2.104 1 + 55741 23905 36809 36830 54597 54597 -0.01303133936426093 YTYIQEHK 8 Unmodified _YTYIQEHK_ 0 0 0 REV__MYO9A|p.K174Q|1|0.26|ENSG00000066933|chr15:72046044-72046044|T/G|missense_variant REV__MYO9A|p.K174Q|1|0.26|ENSG00000066933|chr15:72046044-72046044|T/G|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2691040039062 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 167.53 1 162.64 162.14 163.14 -4.8916 0 0 0 0.21039 1 32962 32962 16.942 4.4107 1 + 55742 23905 36809 36830 54598 54598 -0.01303133936426093 YTYIVPYY 8 Unmodified _YTYIVPYY_ 0 0 0 REV__OR13G1|p.S250Y|1|0.27|ENSG00000197437|chr1:247672293-247672293|G/T|missense_variant REV__OR13G1|p.S250Y|1|0.27|ENSG00000197437|chr1:247672293-247672293|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2655029296875 2 541.265676 1080.5168 NaN NaN NaN NaN NaN NaN NaN 173.39 1 168.51 168.01 169.01 -4.881 0 0 0 0.23487 1 34468 34468 0.62683 0 1 + 55743 24403 36810 36831 54599 54599 -0.020238665368424336 YTYKMTKF 8 Unmodified _YTYKMTKF_ 0 0 0 REV__ENST00000261530.11_1_14:76676509-76676761:+|nuORF REV__ENST00000261530.11_1_14:76676509-76676761:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.270751953125 2 541.272978 1080.5314 NaN NaN NaN NaN NaN NaN NaN 168.59 1 163.72 163.22 164.22 -4.873 0 0 0 0.22636 1 33241 33241 0.25148 0 1 + 55744 20185 36811 36832 54600 54600 -0.005641176603603526 YTYRLIEH 8 Unmodified _YTYRLIEH_ 0 0 0 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 REV__nc|ENSG00000144130|Q86YG4|NT5DC4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7666625976562 2 547.785099 1093.55564 0.33623 0.00018418 -1.8041 -0.00098828 -1.4679 -0.0008041 547.7856087111131 139.97 0.10474 135.12 135.05 135.16 -4.8492 4 2 2 0 0 0 0.71273 1 26975 26975 12.532 0.89125 1 658230 + 55745 16771 36812 36833 54601 54601 0.012608588175226032 YTYSHQTPP 9 Unmodified _YTYSHQTPP_ 0 0 0 REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7861938476562 2 547.251089 1092.48762 0.020807 1.1387E-05 0.22863 0.00012512 0.24944 0.00013651 547.2512573260848 61.08 0.59407 61.08 60.802 61.396 0 28 16 3 0 0 0 0.42844 1 11708 11708 24.021 0 1 2216800 + 55746 17938 36813 36834 54602 54602 -0.054920108331543815 YTYSHQTPP 9 Unmodified _YTYSHQTPP_ 0 0 0 REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7672119140625 2 547.251089 1092.48762 0.22587 0.00012361 0.33699 0.00018442 0.56286 0.00030803 547.2512844562432 64.463 0.5553 61.465 61.12 61.675 -2.9975 23 15 2 0 0 0 0.76271 1 12489 12489 10.074 0 1 1959400 + 55747 17938 36813 36834 54603 54603 -0.054920108331543815 YTYSHQTPP 9 Unmodified _YTYSHQTPP_ 0 0 0 REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant REV__KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7721557617188 2 547.251089 1092.48762 0.36692 0.0002008 0.69587 0.00038081 1.0628 0.00058161 547.2514055177464 64.52 0.5648 61.257 60.977 61.542 -3.2623 26 15 2 0 0 0 0.48644 1 12076 12076 20.454 5.6154 1 1352100 + 55748 17938 36813 36834 54604 54604 -0.054920108331543815 YVAGAFGA 8 Unmodified _YVAGAFGA_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-4|SMG1 REV__nc|ENSG00000157106|Q96Q15-4|SMG1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 378.5043029785156 2 378.189771 754.36499 NaN NaN NaN NaN NaN NaN NaN 70.428 1 66.848 66.348 67.348 -3.5798 0 0 0 0.23711 1 13276 13276 0.063987 0.055711 1 + 55749 17282 36814 36835 54605 54605 -0.022018027739022727 YVASNQHEV 9 Unmodified _YVASNQHEV_ 0 0 0 REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST;REST|p.R349H|1|0.24|ENSG00000084093|chr4:56929904-56929904|G/A|missense_variant;REST|p.S578Vfs*7|3|0.26|ENSG00000084093|chr4:56930584-56930584|A/-|frameshift_variant REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 523.6796264648438 2 523.748713 1045.48287 NaN NaN NaN NaN NaN NaN NaN 23.131 1 21.678 21.178 22.178 -1.4535 0 0 0 0.14843 1 3718 3718 30.637 2.1497 1 55750 1664 36815 36836 54606 54606 -0.038048949759058814 YVASNQHEV 9 Unmodified _YVASNQHEV_ 0 0 0 REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST;REST|p.R349H|1|0.24|ENSG00000084093|chr4:56929904-56929904|G/A|missense_variant;REST|p.S578Vfs*7|3|0.26|ENSG00000084093|chr4:56930584-56930584|A/-|frameshift_variant REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.6868286132812 2 523.748713 1045.48287 NaN NaN NaN NaN NaN NaN NaN 23.408 1 21.619 21.119 22.119 -1.7886 0 0 0 0.19687 1 3763 3763 8.1555 7.3106 1 55751 1664 36815 36836 54607 54607 -0.038048949759058814 YVCLKRGKK 9 Unmodified _YVCLKRGKK_ 0 0 0 REV__FAM111A|p.M318*|1|0.5|ENSG00000166801|chr11:59152614-59152614|A/-|frameshift_variant REV__FAM111A|p.M318*|1|0.5|ENSG00000166801|chr11:59152614-59152614|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7875366210938 2 547.828786 1093.64302 NaN NaN NaN NaN NaN NaN NaN 150.54 1 145.34 144.84 145.84 -5.1994 0 0 0 0.19652 1 29173 29173 0.12781 0 1 + 55752 17872 36816 36837 54608 54608 0.0999436148742916 YVCMCVLVCMC 11 Unmodified _YVCMCVLVCMC_ 0 0 0 nc|nan|Q96N68|C18orf15 nc|nan|Q96N68|C18orf15 nc|nan|Q96N68|C18orf15 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 422.8332214355469 3 422.834245 1265.48091 NaN NaN NaN NaN NaN NaN NaN 6.2614 1 5.2525 4.7525 5.7525 -1.0089 0 0 0 0.23698 1 384 384 0 0 1 55753 12672 36817 36838 54609 54609 -0.14121513959548793 YVCPHAAI 8 Unmodified _YVCPHAAI_ 0 0 0 tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1;tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.22833251953125 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 90.269 1 86.41 85.91 86.91 -3.8595 0 0 0 0.23711 1 17661 17661 0.063987 0 1 55754 26098 36818 36839 54610 54610 -0.019854982088986617 YVDPKNLKY 9 Unmodified _YVDPKNLKY_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2105407714844 3 380.541363 1138.60226 -0.4565 -0.00017372 0.77808 0.00029609 0.32158 0.00012237 380.5415571935306 64.932 0.52672 64.932 64.682 65.209 0 33 14 3 0 0 0 0.50419 2 12534 12476;12534 19.362 14.833 1 2583000 55755 7388 36819 36840 54611;54612 54612 0.038502986487856106 YVDPKNLKY 9 Unmodified _YVDPKNLKY_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 381.2102355957031 3 380.541363 1138.60226 -0.34711 -0.00013209 0.40906 0.00015566 0.061945 2.3573E-05 380.54144123009263 68.246 0.69475 64.856 64.49 65.185 -3.3903 44 19 3 0 0 0 0.5685 1 12858 12858 15.248 10.72 1 3129900 55756 7388 36819 36840 54613 54613 0.038502986487856106 YVDPKNLKY 9 Unmodified _YVDPKNLKY_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 380.541363 1138.60226 -0.27806 -0.00010581 0.33888 0.00012896 0.060822 2.3145E-05 380.87580459463254 68.061 0.65417 64.953 64.591 65.245 -3.1086 0.048787 5.7538E-06 NaN 19.362 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3800700 55757 7388 36819 36840 0.038502986487856106 YVDPKNLKY 9 Unmodified _YVDPKNLKY_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 380.541363 1138.60226 0.32831 0.00012494 -0.35219 -0.00013402 -0.023872 -9.0842E-06 380.5411495452579 68.412 0.52773 64.876 64.656 65.184 -3.5362 -0.028185 -0.00078318 NaN 19.362 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2799200 55758 7388 36819 36840 0.038502986487856106 YVDQQFEQYFR 11 Unmodified _YVDQQFEQYFR_ 0 0 0 nc|ENSG00000284874|Q99719-2|SEPTIN5;ENSG00000184702|ENST00000455784|SEPTIN5 nc|ENSG00000284874|Q99719-2|SEPTIN5 nc|ENSG00000284874|Q99719-2|SEPTIN5 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 508.0948181152344 3 508.236891 1521.68884 NaN NaN NaN NaN NaN NaN NaN 144.82 1 144.82 144.32 145.32 0 0 0 0 0.22632 1 28939 28939 1.4551 1.4546 1 55759 6930 36820 36841 54614 54614 -0.051133665873067 YVDRLGYYPY 10 Unmodified _YVDRLGYYPY_ 0 0 0 SPAM1|p.K450Rfs*3|1|0.35|ENSG00000106304|chr7:123959786-123959787|AA/-|frameshift_variant;ENSG00000106304|ENST00000682466|SPAM1;nc|ENSG00000106304|P38567-2|SPAM1 SPAM1|p.K450Rfs*3|1|0.35|ENSG00000106304|chr7:123959786-123959787|AA/-|frameshift_variant SPAM1|p.K450Rfs*3|1|0.35|ENSG00000106304|chr7:123959786-123959787|AA/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 437.219970703125 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 42.682 1 40.031 39.531 40.531 -2.651 0 0 0 0.22588 1 7690 7690 4.1895 0.86986 1 55760 2375 36821 36842 54615 54615 -0.022866201850774814 YVDSEGHLY 9 Unmodified _YVDSEGHLY_ 0 0 0 ENST00000489856.1_1_7:116165116-116166890:+|nuORF;ENSG00000105974|ENST00000341049|CAV1 ENST00000489856.1_1_7:116165116-116166890:+|nuORF ENST00000489856.1_1_7:116165116-116166890:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2616577148438 2 541.743096 1081.47164 0.16047 8.6935E-05 -0.20771 -0.00011252 -0.047236 -2.559E-05 541.7429878222883 56.132 1.1589 56.132 55.516 56.675 0 78 32 5 0 0 0 0.027812 1 10708 10708 92.822 75.709 1 16320000 55761 2355 36822 36843 54616 54616 -0.06583717070043349 YVDSEGHLY 9 Unmodified _YVDSEGHLY_ 0 0 0 ENST00000489856.1_1_7:116165116-116166890:+|nuORF;ENSG00000105974|ENST00000341049|CAV1 ENST00000489856.1_1_7:116165116-116166890:+|nuORF ENST00000489856.1_1_7:116165116-116166890:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2801513671875 2 541.743096 1081.47164 0.17243 9.3412E-05 0.23628 0.00012801 0.40871 0.00022142 541.7430999291544 59.285 0.80665 56.374 56.001 56.808 -2.9105 71 22 4 0 0 0 0.12295 1 11419 11419 64.236 38.837 1 7174500 55762 2355 36822 36843 54617 54617 -0.06583717070043349 YVDSEGHLY 9 Unmodified _YVDSEGHLY_ 0 0 0 ENST00000489856.1_1_7:116165116-116166890:+|nuORF;ENSG00000105974|ENST00000341049|CAV1 ENST00000489856.1_1_7:116165116-116166890:+|nuORF ENST00000489856.1_1_7:116165116-116166890:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2731323242188 2 541.743096 1081.47164 0.12579 6.8145E-05 0.44177 0.00023933 0.56756 0.00030747 541.7430949792446 59.613 0.83974 56.3 55.961 56.801 -3.3139 63 23 4 0 0 0 0.037229 1 11099 11099 85.357 59.957 1 3987100 55763 2355 36822 36843 54618 54618 -0.06583717070043349 YVDSEGHLY 9 Unmodified _YVDSEGHLY_ 0 0 0 ENST00000489856.1_1_7:116165116-116166890:+|nuORF;ENSG00000105974|ENST00000341049|CAV1 ENST00000489856.1_1_7:116165116-116166890:+|nuORF ENST00000489856.1_1_7:116165116-116166890:+|nuORF MULTI-MATCH-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 541.743096 1081.47164 0.21019 0.00011387 0.58099 0.00031475 0.79118 0.00042862 541.7430991386058 59.564 0.65845 56.34 55.945 56.603 -3.2237 0.053651 0.00043288 NaN 92.822 59 18 5 NaN NaN NaN NaN 0 NaN NaN 0 6265300 55764 2355 36822 36843 -0.06583717070043349 YVDTFVSVY 9 Unmodified _YVDTFVSVY_ 0 0 0 ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 547.7687377929688 2 546.76604 1091.51753 0.30664 0.00016766 -0.069856 -3.8195E-05 0.23678 0.00012946 546.765969875595 150.45 0.81055 145.72 145.36 146.17 -4.7323 47 22 3 0 0 0 0.32428 2 29851 29851;29900 30.225 18.585 1 8704800 55765 4152 36823 36844 54619;54620 54619 -0.024570718878067055 YVDTFVSVY 9 Unmodified _YVDTFVSVY_ 0 0 0 ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7694702148438 2 546.76604 1091.51753 0.15911 8.6996E-05 0.48896 0.00026734 0.64806 0.00035434 546.7660048698199 150.8 0.8089 145.6 145.3 146.11 -5.1994 68 22 4 0 0 0 0.29146 2 29214 29214;29271 32.117 15.004 1 8085300 55766 4152 36823 36844 54621;54622 54621 -0.024570718878067055 YVDTFVSVY 9 Unmodified _YVDTFVSVY_ 0 0 0 ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 547.7682495117188 2 546.76604 1091.51753 0.43513 0.00023792 0.63404 0.00034667 1.0692 0.00058459 546.7658994668386 150.75 0.87666 145.63 145.21 146.09 -5.1204 73 24 5 0 0 0 0.50294 2 29234 29177;29234 19.439 8.0611 1 6493800 55767 4152 36823 36844 54623;54624 54624 -0.024570718878067055 YVDTGKLIDK 10 Unmodified _YVDTGKLIDK_ 0 0 0 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 576.3194580078125 2 576.318971 1150.62339 0.58359 0.00033633 -0.3736 -0.00021531 0.20999 0.00012102 576.3187256020268 77.056 0.80576 77.056 76.621 77.427 0 53 19 3 0 0 0 0.013572 3 14973 14973;14976;15026 49.554 14.622 1 12276000 55768 5147 36824 36845 54625;54626;54627 54625 0.054102639576512956 YVDTGKLIDK 10 Unmodified _YVDTGKLIDK_ 0 0 0 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 576.3299560546875 2 576.318971 1150.62339 0.038965 2.2456E-05 0.28321 0.00016322 0.32218 0.00018568 576.3191378359361 80.636 0.84103 77.079 76.567 77.408 -3.557 62 23 4 0 0 0 0.05007 3 15731 15731;15752;15793 29.841 13.77 1 15006000 55769 5147 36824 36845 54628;54629;54630 54628 0.054102639576512956 YVDTGKLIDK 10 Unmodified _YVDTGKLIDK_ 0 0 0 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 576.319091796875 2 576.318971 1150.62339 0.10888 6.2751E-05 0.080767 4.6547E-05 0.18965 0.0001093 576.3190301527702 80.982 0.77621 77.143 76.767 77.543 -3.8392 64 21 4 0 0 0 0.05007 4 15378 15378;15410;15426;15430 29.841 15.06 1 13014000 55770 5147 36824 36845 54631;54632;54633;54634 54631 0.054102639576512956 YVDTGKLIDK 10 Unmodified _YVDTGKLIDK_ 0 0 0 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3192138671875 2 576.318971 1150.62339 -0.19484 -0.00011229 0.53556 0.00030865 0.34072 0.00019636 576.3193563684556 80.843 0.94092 77.155 76.582 77.523 -3.6879 69 26 4 0 0 0 0.05007 3 15402 15402;15437;15473 25.997 17.246 1 14013000 55771 5147 36824 36845 54635;54636;54637 54635 0.054102639576512956 YVDTMSRLRK 10 Unmodified _YVDTMSRLRK_ 0 0 0 REV__ENSG00000183813|ENST00000330953|CCR4 REV__ENSG00000183813|ENST00000330953|CCR4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 634.8190307617188 2 634.842622 1267.67069 NaN NaN NaN NaN NaN NaN NaN 10.238 1 9.1713 8.6713 9.6713 -1.0664 0 0 0 0.22588 1 1097 1097 0 0 1 + 55772 18868 36825 36846 54638 54638 0.04756219956971108 YVDTNLQK 8 Unmodified _YVDTNLQK_ 0 0 0 ENST00000558539.5_1_15:79170271-79178570:+|nuORF;ENST00000557961.5_1_15:79165359-79178570:+|nuORF;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;ENST00000559619.5_1_15:79165359-79179692:+|nuORF;ENST00000558522.5_1_15:79165359-79183469:+|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 ENST00000558539.5_1_15:79170271-79178570:+|nuORF ENST00000558539.5_1_15:79170271-79178570:+|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 490.25897216796875 2 490.756007 979.497461 0.52201 0.00025618 -1.468 -0.00072044 -0.94601 -0.00046426 490.75541272288837 30.767 0.3539 28.65 28.507 28.861 -2.1167 12 9 2 0 0 0 0.99312 1 5551 5551 14.838 0 1 418280 55773 7011 36826 36847 54639 54639 0.006891771722280282 YVDYPNDVKF 10 Unmodified _YVDYPNDVKF_ 0 0 0 ENST00000498707.5_1_3:64502565-64502754:-|nuORF ENST00000498707.5_1_3:64502565-64502754:-|nuORF ENST00000498707.5_1_3:64502565-64502754:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7514038085938 2 630.300778 1258.587 0.39946 0.00025178 -0.22545 -0.0001421 0.17401 0.00010968 630.3003953179335 125.7 0.74295 125.7 125.29 126.03 0 30 20 2 0 0 0 0.6817 3 24756 24756;24814;24841 13.042 2.243 1 5069200 55774 10608 36827 36848 54640;54641;54642 54640 -0.03194612939068975 YVDYPNDVKF 10 Unmodified _YVDYPNDVKF_ 0 0 0 ENST00000498707.5_1_3:64502565-64502754:-|nuORF ENST00000498707.5_1_3:64502565-64502754:-|nuORF ENST00000498707.5_1_3:64502565-64502754:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 630.7745361328125 2 630.300778 1258.587 0.94269 0.00059418 -0.53013 -0.00033414 0.41256 0.00026004 630.3002754173806 130.49 0.70062 125.85 125.51 126.21 -4.6359 49 19 4 0 0 0 0.5575 2 25724 25724;25757 21.537 6.2885 1 7077700 55775 10608 36827 36848 54643;54644 54643 -0.03194612939068975 YVDYPNDVKF 10 Unmodified _YVDYPNDVKF_ 0 0 0 ENST00000498707.5_1_3:64502565-64502754:-|nuORF ENST00000498707.5_1_3:64502565-64502754:-|nuORF ENST00000498707.5_1_3:64502565-64502754:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7711791992188 2 630.300778 1258.587 0.41459 0.00026132 0.0049821 3.1402E-06 0.41957 0.00026446 630.3007451928302 130.56 0.61752 125.78 125.46 126.08 -4.7725 38 17 3 0 0 0 0.6817 3 25092 25092;25105;25156 13.042 3.6593 1 3864900 55776 10608 36827 36848 54645;54646;54647 54645 -0.03194612939068975 YVEDFRFQP 9 Unmodified _YVEDFRFQP_ 0 0 0 GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant;ENSG00000075240|ENST00000406902|GRAMD4 GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 400.34991455078125 3 400.860984 1199.56112 -0.6032 -0.0002418 0.28482 0.00011417 -0.31839 -0.00012763 400.86118999250056 49.352 0.52863 46.345 46.035 46.564 -3.0068 21 14 2 0 0 0 0.87918 1 9012 9012 5.2969 5.2969 1 1210700 55777 1513 36828 36849 54648 54648 -0.030674623906861598 YVEDFRFQP 9 Unmodified _YVEDFRFQP_ 0 0 0 GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant;ENSG00000075240|ENST00000406902|GRAMD4 GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 3 400.860984 1199.56112 0.31091 0.00012463 -0.58043 -0.00023267 -0.26952 -0.00010804 400.86094634118325 46.401 0.55555 46.401 46.173 46.729 0 0.068555 -0.00052577 NaN 5.2969 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1241400 55778 1513 36828 36849 -0.030674623906861598 YVEDFRFQP 9 Unmodified _YVEDFRFQP_ 0 0 0 GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant;ENSG00000075240|ENST00000406902|GRAMD4 GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 400.860984 1199.56112 -0.29632 -0.00011878 -0.052792 -2.1162E-05 -0.34911 -0.00013995 400.86091492547985 49.098 0.45835 46.217 46.063 46.522 -2.8811 -0.11514 0.00010876 NaN 5.2969 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2833600 55779 1513 36828 36849 -0.030674623906861598 YVEDFRFQP 9 Unmodified _YVEDFRFQP_ 0 0 0 GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant;ENSG00000075240|ENST00000406902|GRAMD4 GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 400.860984 1199.56112 0.011398 4.5689E-06 -0.7837 -0.00031415 -0.7723 -0.00030958 400.86094283059725 49.365 0.75883 46.366 45.895 46.654 -2.999 0.033852 -0.00077021 NaN 5.2969 39 21 3 NaN NaN NaN NaN 0 NaN NaN 0 2203900 55780 1513 36828 36849 -0.030674623906861598 YVEKGIIEDE 10 Unmodified _YVEKGIIEDE_ 0 0 0 tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1 tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1 tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 398.862060546875 3 398.867805 1193.58158 NaN NaN NaN NaN NaN NaN NaN 10.015 1 10.015 9.5154 10.515 0 0 0 0 0.22588 1 1221 1221 0 0 1 55781 26295 36829 36850 54649 54649 -0.007463365214789519 YVENRPKYAGY 11 Unmodified _YVENRPKYAGY_ 0 0 0 nc|ENSG00000107643|P45983-3|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF;ENST00000469110.1_1_10:49633920-49634247:+|nuORF;ENST00000482840.1_1_10:49633920-49634652:+|nuORF nc|ENSG00000107643|P45983-3|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 453.7476501464844 3 453.894577 1358.6619 -0.13768 -6.2494E-05 1.0763 0.00048851 0.93857 0.00042601 453.8945764898389 44.57 0.63552 41.78 41.459 42.095 -2.79 34 17 3 0 0 0 0.93557 1 8388 8388 11.065 6.6591 1 1731100 55782 2432 36830 36851 54650 54650 -0.0030843040781292075 YVENRPKYAGY 11 Unmodified _YVENRPKYAGY_ 0 0 0 nc|ENSG00000107643|P45983-3|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF;ENST00000469110.1_1_10:49633920-49634247:+|nuORF;ENST00000482840.1_1_10:49633920-49634652:+|nuORF nc|ENSG00000107643|P45983-3|MAPK8 nc|ENSG00000107643|P45983-3|MAPK8 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 3 453.894577 1358.6619 -0.12869 -5.841E-05 1.0179 0.00046201 0.8892 0.0004036 453.89461922559497 44.617 0.60011 41.87 41.464 42.064 -2.7475 0.044838 -2.929E-05 NaN 7.846 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1715100 55783 2432 36830 36851 -0.0030843040781292075 YVEPQWLF 8 Unmodified _YVEPQWLF_ 0 0 0 ENST00000508165.1_1_4:135249290-135249890:+|nuORF ENST00000508165.1_1_4:135249290-135249890:+|nuORF ENST00000508165.1_1_4:135249290-135249890:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 541.2733764648438 2 541.271293 1080.52803 NaN NaN NaN NaN NaN NaN NaN 122.32 1 117.79 117.29 118.29 -4.5305 0 0 0 0.22628 1 23549 23549 3.5871 2.9057 1 55784 10709 36831 36852 54651 54651 -0.00901044442730381 YVEVSNIR 8 Unmodified _YVEVSNIR_ 0 0 0 REV__PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant REV__PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2643737792969 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 60.761 1 57.447 56.947 57.947 -3.3139 0 0 0 0.22757 1 11321 11321 1.7423 0 1 + 55785 15305 36832 36853 54652 54652 0.02332883409144415 YVEVSNIR 8 Unmodified _YVEVSNIR_ 0 0 0 REV__PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant REV__PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2645263671875 2 490.263999 978.513445 -0.11278 -5.5292E-05 0.24338 0.00011932 0.1306 6.403E-05 490.2640830625937 59.592 1.9658 56.368 55.7 57.666 -3.2237 144 55 4 0 0 0 8448 1 11362 11362 1.7423 0 1 39769000 + 55786 15305 36832 36853 54653 54653 0.02332883409144415 YVFKKRFRIRR 11 Unmodified _YVFKKRFRIRR_ 0 0 0 ENST00000493793.1_1_1:51887572-51887638:-|nuORF ENST00000493793.1_1_1:51887572-51887638:-|nuORF ENST00000493793.1_1_1:51887572-51887638:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6837158203125 3 523.6598 1567.95757 0.18936 9.916E-05 3.466 0.001815 3.6553 0.0019141 523.9963097683502 149.21 0.10028 149.21 149.13 149.23 0 4 2 2 0 0 0 0.66242 1 29872 29872 0.0059557 0 1 1385300 55787 10550 36833 36854 54654 54654 0.19630861961331902 YVFKKRFRIRR 11 Unmodified _YVFKKRFRIRR_ 0 0 0 ENST00000493793.1_1_1:51887572-51887638:-|nuORF ENST00000493793.1_1_1:51887572-51887638:-|nuORF ENST00000493793.1_1_1:51887572-51887638:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6792602539062 3 523.6598 1567.95757 NaN NaN NaN NaN NaN NaN NaN 165.08 1 165.08 164.58 165.58 0 0 0 0 0.23698 1 33460 33460 0.08335 0 1 55788 10550 36833 36854 54655 54655 0.19630861961331902 YVFKKRFRIRR 11 Unmodified _YVFKKRFRIRR_ 0 0 0 ENST00000493793.1_1_1:51887572-51887638:-|nuORF ENST00000493793.1_1_1:51887572-51887638:-|nuORF ENST00000493793.1_1_1:51887572-51887638:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 523.7002563476562 3 523.6598 1567.95757 0.34319 0.00017971 2.5739 0.0013479 2.9171 0.0015276 523.9952299943042 143.48 0.17358 138.58 138.44 138.61 -4.8982 5 4 2 0 0 0 0.96218 1 27686 27686 0.40827 0 1 1634200 55789 10550 36833 36854 54656 54656 0.19630861961331902 YVFLLVLKPL 10 Unmodified _YVFLLVLKPL_ 0 0 0 REV__nc|ENSG00000166265|Q96J86-6|CYYR1 REV__nc|ENSG00000166265|Q96J86-6|CYYR1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 402.2563171386719 3 402.261649 1203.76312 NaN NaN NaN NaN NaN NaN NaN 176.49 1 176.49 175.99 176.99 0 0 0 0 0.22588 1 36561 36561 0.15932 0 1 + 55790 17835 36834 36855 54657 54657 0.16938673032859697 YVFMVYFI 8 Unmodified _YVFMVYFI_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 541.2709350585938 2 541.274989 1080.53543 NaN NaN NaN NaN NaN NaN NaN 150.13 1 150.13 149.63 150.63 0 0 0 0 0.21486 1 30056 30056 11.114 0.29054 1 55791 5525 36835 36856 54658 54658 -0.0016202816664190323 YVHLEWSF 8 Unmodified _YVHLEWSF_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 541.2810668945312 2 540.761092 1079.50763 0.15956 8.6281E-05 0.79453 0.00042965 0.95409 0.00051593 541.2626085390629 76.543 0.30585 72.82 72.756 73.062 -3.7227 11 8 2 0 0 0 0.69887 1 14520 14520 14.582 0.67564 1 622170 + 55792 17604 36836 36857 54659 54659 -0.028942151025376006 YVIAGGIG 8 Unmodified _YVIAGGIG_ 0 0 0 tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1 tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1 tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 375.2142639160156 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 177.77 1 177.77 177.27 178.27 0 0 0 0 0.2396 1 36825 36825 0 0 1 55793 26076 36837 36858 54660 54660 0.027670567772588583 YVIAGGIG 8 Unmodified _YVIAGGIG_ 0 0 0 tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1 tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1 tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.21453857421875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 7.5752 1 6.5306 6.0306 7.0306 -1.0446 0 0 0 0.2396 1 658 658 0 0 1 55794 26076 36837 36858 54661 54661 0.027670567772588583 YVIAGGIG 8 Unmodified _YVIAGGIG_ 0 0 0 tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1 tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1 tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21405029296875 2 375.213246 748.41194 NaN NaN NaN NaN NaN NaN NaN 178.47 1 173.56 173.06 174.06 -4.9088 0 0 0 0.2396 1 35602 35602 0 0 1 55795 26076 36837 36858 54662 54662 0.027670567772588583 YVKEVFGS 8 Unmodified _YVKEVFGS_ 0 0 0 nc|ENSG00000136897|Q8N5N7-2|MRPL50;ENSG00000136897|ENST00000374865|MRPL50 nc|ENSG00000136897|Q8N5N7-2|MRPL50 nc|ENSG00000136897|Q8N5N7-2|MRPL50 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 310.1649169921875 3 310.164004 927.470183 NaN NaN NaN NaN NaN NaN NaN 114.85 1 110.3 109.8 110.8 -4.555 0 0 0 0.21486 1 22051 22051 1.6526 0 1 55796 4051 36838 36859 54663 54663 0.003546936318684857 YVKKPKKVK 9 Unmodified _YVKKPKKVK_ 0 0 0 REV__nc|ENSG00000119682|O15033-2|AREL1 REV__nc|ENSG00000119682|O15033-2|AREL1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 373.2518615722656 3 373.253376 1116.7383 NaN NaN NaN NaN NaN NaN NaN 52.067 1 49.015 48.515 49.515 -3.0517 0 0 0 0.23508 1 9604 9604 0.26902 0 1 + 55797 15589 36839 36860 54664 54664 0.18460037950126207 YVKVKKIL 8 Unmodified _YVKVKKIL_ 0 0 0 ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14;TEX14|p.G1117Hfs*15|1|0.12|ENSG00000121101|chr17:58579689-58579692|CACC/-|frameshift_variant;TEX14|p.A467Sfs*11|3|0.24|ENSG00000121101|chr17:58602546-58602547|-/T|frameshift_variant ENSG00000121101|ENST00000349033|TEX14 ENSG00000121101|ENST00000349033|TEX14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 495.7530517578125 2 495.839146 989.663738 NaN NaN NaN NaN NaN NaN NaN 12.25 1 12.25 11.75 12.75 0 0 0 0 0.2396 1 1693 1693 0.0082765 0 1 55798 3170 36840 36861 54665 54665 0.16849275138747544 YVKVKKIL 8 Unmodified _YVKVKKIL_ 0 0 0 ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14;TEX14|p.G1117Hfs*15|1|0.12|ENSG00000121101|chr17:58579689-58579692|CACC/-|frameshift_variant;TEX14|p.A467Sfs*11|3|0.24|ENSG00000121101|chr17:58602546-58602547|-/T|frameshift_variant ENSG00000121101|ENST00000349033|TEX14 ENSG00000121101|ENST00000349033|TEX14 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 495.72760009765625 2 495.839146 989.663738 NaN NaN NaN NaN NaN NaN NaN 12.794 1 12.794 12.294 13.294 0 0 0 0 0.2396 1 1806 1806 0.0082765 0 1 55799 3170 36840 36861 54666 54666 0.16849275138747544 YVKVMKRKK 9 Unmodified _YVKVMKRKK_ 0 0 0 REV__nc|ENSG00000174953|Q9H2U1-3|DHX36 REV__nc|ENSG00000174953|Q9H2U1-3|DHX36 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 590.2609252929688 2 590.373361 1178.73217 NaN NaN NaN NaN NaN NaN NaN 116.79 1 112.21 111.71 112.71 -4.5815 0 0 0 0.19624 1 22411 22411 0.0033805 0 1 + 55800 18443 36841 36862 54667 54667 0.14995196446943737 YVLEETSVMLA 11 Unmodified _YVLEETSVMLA_ 0 0 0 sp|F5HCM1|VIE1_HCMVMImmediateearlyproteinIE1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL123PE=3SV=1;sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1 sp|F5HCM1|VIE1_HCMVMImmediateearlyproteinIE1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL123PE=3SV=1 sp|F5HCM1|VIE1_HCMVMImmediateearlyproteinIE1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL123PE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 418.9078674316406 3 418.881057 1253.62134 NaN NaN NaN NaN NaN NaN NaN 9.986 1 8.9196 8.4196 9.4196 -1.0664 0 0 0 0.23698 1 1054 1054 0 0 1 55801 25727 36842 36863 54668 54668 0.004674671575685352 YVLKKIKKKI 10 Unmodified _YVLKKIKKKI_ 0 0 0 tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7578125 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 70.794 1 70.794 70.294 71.294 0 0 0 0 2.8426 1 13714 13714 0 0 1 55802 26345 36843 36864 54669 54669 0.24977428598162987 YVLKKIKKKI 10 Unmodified _YVLKKIKKKI_ 0 0 0 tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 630.7640380859375 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 71.033 1 71.033 70.533 71.533 0 0 0 0 2.8426 1 13756 13756 0 0 1 55803 26345 36843 36864 54670 54670 0.24977428598162987 YVLKKIKKKI 10 Unmodified _YVLKKIKKKI_ 0 0 0 tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7584838867188 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 79.907 1 76.102 75.602 76.602 -3.8048 0 0 0 2.8426 1 15164 15164 0 0 1 55804 26345 36843 36864 54671 54671 0.24977428598162987 YVLKLLKL 8 Unmodified _YVLKLLKL_ 0 0 0 nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2 nc|ENSG00000128578|Q9ULQ0-2|STRIP2 nc|ENSG00000128578|Q9ULQ0-2|STRIP2 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 495.6961364746094 2 495.341521 988.668489 0.45057 0.00022319 -0.18393 -9.1107E-05 0.26664 0.00013208 495.34128386241287 99.538 0.63154 99.538 99.23 99.862 0 22 17 2 0 0 0 0.9003 1 19572 19572 0 0 1 1883700 55805 3528 36844 36865 54672 54672 0.17370159281495035 YVLKLLKL 8 Unmodified _YVLKLLKL_ 0 0 0 nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2 nc|ENSG00000128578|Q9ULQ0-2|STRIP2 nc|ENSG00000128578|Q9ULQ0-2|STRIP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 2 495.341521 988.668489 -0.07102 -3.5179E-05 0.3413 0.00016906 0.27028 0.00013388 495.3416481350239 103.57 0.50808 99.35 99.213 99.721 -4.2183 -0.066294 0.00022411 NaN 0 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1561100 55806 3528 36844 36865 0.17370159281495035 YVLKLLKL 8 Unmodified _YVLKLLKL_ 0 0 0 nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2 nc|ENSG00000128578|Q9ULQ0-2|STRIP2 nc|ENSG00000128578|Q9ULQ0-2|STRIP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 2 495.341521 988.668489 0.17206 8.523E-05 0.10904 5.401E-05 0.2811 0.00013924 495.3414800965692 103.71 0.5482 99.367 99.178 99.726 -4.346 -0.049245 -5.9994E-06 NaN 0 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1904000 55807 3528 36844 36865 0.17370159281495035 YVLKLLKL 8 Unmodified _YVLKLLKL_ 0 0 0 nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2 nc|ENSG00000128578|Q9ULQ0-2|STRIP2 nc|ENSG00000128578|Q9ULQ0-2|STRIP2 MULTI-MATCH Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 2 495.341521 988.668489 0.43253 0.00021425 0.096577 4.7839E-05 0.5291 0.00026209 495.3415007259514 103.46 0.55626 99.41 99.104 99.66 -4.0543 -0.0061148 -1.8341E-05 NaN 0 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1146100 55808 3528 36844 36865 0.17370159281495035 YVLKLLKV 8 Unmodified _YVLKLLKV_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 325.8906555175781 3 325.891556 974.652839 NaN NaN NaN NaN NaN NaN NaN 10.142 1 9.3479 8.8479 9.8479 -0.79424 0 0 0 0.21486 1 1241 1241 0 0 1 55809 4452 36845 36866 54673 54673 0.16449872764451356 YVLPQPVL 8 Unmodified _YVLPQPVL_ 0 0 0 REV__TP73|p.D387Y|1|0.35|ENSG00000078900|chr1:3729411-3729411|G/T|missense_variant REV__TP73|p.D387Y|1|0.35|ENSG00000078900|chr1:3729411-3729411|G/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 310.1651306152344 3 310.188261 927.542954 NaN NaN NaN NaN NaN NaN NaN 12.928 1 11.918 11.418 12.418 -1.0098 0 0 0 0.2396 1 1838 1838 0.0082765 0 1 + 55810 24836 36846 36867 54674 54674 0.07628447425270224 YVLVQDYF 8 Unmodified _YVLVQDYF_ 0 0 0 VWF|p.C898F|1|0.48|ENSG00000110799|chr12:6031571-6031571|C/A|missense_variant VWF|p.C898F|1|0.48|ENSG00000110799|chr12:6031571-6031571|C/A|missense_variant VWF|p.C898F|1|0.48|ENSG00000110799|chr12:6031571-6031571|C/A|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.6777954101562 2 523.7633 1045.51205 0.18902 9.8999E-05 -0.94742 -0.00049623 -0.75841 -0.00039723 523.7627090338669 149.39 0.98314 149.39 148.93 149.91 0 36 27 2 0 0 0 0.47513 1 29825 29825 34.187 6.0141 1 3993200 55811 26573 36847 36868 54675 54675 -0.008887506796327216 YVLYLNFY 8 Unmodified _YVLYLNFY_ 0 0 0 REV__ENST00000475700.1_1_1:112303857-112303944:+|nuORF REV__ENST00000475700.1_1_1:112303857-112303944:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 547.7811279296875 2 547.781493 1093.54843 NaN NaN NaN NaN NaN NaN NaN 62.124 1 62.124 61.624 62.624 0 0 0 0 0.22676 1 11926 11926 1.7423 0.89733 1 + 55812 22098 36848 36869 54676 54676 0.005401262171062626 YVLYSKRFH 9 Unmodified _YVLYSKRFH_ 0 0 0 CHST15|p.R226H|1|0.42|ENSG00000182022|chr10:124044789-124044789|C/T|missense_variant CHST15|p.R226H|1|0.42|ENSG00000182022|chr10:124044789-124044789|C/T|missense_variant CHST15|p.R226H|1|0.42|ENSG00000182022|chr10:124044789-124044789|C/T|missense_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 304.0396423339844 4 303.918558 1211.64513 -0.67066 -0.00020383 0.5135 0.00015606 -0.15717 -4.7766E-05 304.1698501465159 7.2956 0.7852 6.251 5.6169 6.4021 -1.0446 29 22 2 0 0 0 0.88466 1 509 509 0.26902 0 1 250820 55813 555 36849 36870 54677 54677 0.047771134968797924 YVNKNKLTK 9 Unmodified _YVNKNKLTK_ 0 0 0 REV__tr|U7SUA1|U7SUA1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01355PE=4SV=1 REV__tr|U7SUA1|U7SUA1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01355PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 369.88836669921875 3 369.888874 1106.64479 NaN NaN NaN NaN NaN NaN NaN 9.9871 1 8.8936 8.3936 9.3936 -1.0936 0 0 0 0.23508 1 1102 1102 0 0 1 + 55814 25154 36850 36871 54678 54678 0.09573693777019798 YVNLREVS 8 Unmodified _YVNLREVS_ 0 0 0 ENSG00000203697|ENST00000366872|CAPN8 ENSG00000203697|ENST00000366872|CAPN8 ENSG00000203697|ENST00000366872|CAPN8 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2637023925781 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 57.816 1 57.816 57.316 58.316 0 0 0 0 0.23312 1 11057 11057 3.5871 0.95582 1 55815 7539 36851 36872 54679 54679 0.023328834091330464 YVPLLLLLL 9 Unmodified _YVPLLLLLL_ 0 0 0 nc|ENSG00000228789|E2RYF7|HCG22;ENST00000565192.1_1_6:31022106-31024293:+|nuORF nc|ENSG00000228789|E2RYF7|HCG22 nc|ENSG00000228789|E2RYF7|HCG22 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 528.8548583984375 2 528.857004 1055.69945 NaN NaN NaN NaN NaN NaN NaN 10.421 1 9.3549 8.8549 9.8549 -1.0664 0 0 0 0.23508 1 1126 1126 0 0 1 55816 12603 36852 36873 54680 54680 0.1738331259575716 YVPQYRDIRRT 11 Unmodified _YVPQYRDIRRT_ 0 0 0 nc|ENSG00000122490|Q8N2U9-3|SLC66A2;nc|ENSG00000122490|Q8N2U9-2|SLC66A2;ENSG00000122490|ENST00000397778|SLC66A2 nc|ENSG00000122490|Q8N2U9-3|SLC66A2 nc|ENSG00000122490|Q8N2U9-3|SLC66A2 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2675476074219 3 489.600275 1465.779 0.1977 9.6795E-05 -0.65649 -0.00032142 -0.45879 -0.00022462 489.59985082764655 32.728 0.41794 32.728 32.502 32.92 0 27 11 3 0 0 0 0.66124 1 5943 5943 0.026206 0 1 2356500 55817 3225 36853 36874 54681 54681 0.06473727531761142 YVRAEAVTA 9 Unmodified _YVRAEAVTA_ 0 0 0 REV__nc|ENSG00000110693|P35712-4|SOX6 REV__nc|ENSG00000110693|P35712-4|SOX6 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.27197265625 2 490.263999 978.513445 -0.2809 -0.00013772 -1.2088 -0.00059262 -1.4897 -0.00073034 490.26332487166826 54.076 0.31501 50.938 50.712 51.027 -3.1377 20 8 3 0 0 0 0.48644 1 10015 10015 20.454 1.1966 1 25071000 + 55818 15210 36854 36875 54682 54682 0.023328834091216777 YVRALTADA 9 Unmodified _YVRALTADA_ 0 0 0 ENSG00000225950|ENST00000593537|NTF4 ENSG00000225950|ENST00000593537|NTF4 ENSG00000225950|ENST00000593537|NTF4 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2662353515625 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 94.589 1 90.708 90.208 91.208 -3.881 0 0 0 0.21844 1 18148 18148 18.146 1.2041 1 55819 7789 36855 36876 54683 54683 0.02332883409110309 YVRGNVKAH 9 Unmodified _YVRGNVKAH_ 0 0 0 REV__nc|ENSG00000154864|Q9H5I5-4|PIEZO2 REV__nc|ENSG00000154864|Q9H5I5-4|PIEZO2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 522.2778930664062 2 522.290882 1042.56721 NaN NaN NaN NaN NaN NaN NaN 144.87 1 139.81 139.31 140.31 -5.0671 0 0 0 0.22962 1 27969 27969 14.838 3.198 1 + 55820 17201 36856 36877 54684 54684 0.04763100631521411 YVRKLALE 8 Unmodified _YVRKLALE_ 0 0 0 sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1;sp|F5HIN9|TRX2_HCMVMTriplexcapsidprotein2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRX2PE=3SV=1 sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1 sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 332.1963195800781 3 331.202682 990.586216 -0.0081066 -2.6849E-06 -0.29663 -9.8245E-05 -0.30474 -0.00010093 331.2023046772349 78.945 2.0152 78.945 78.334 80.349 0 131 57 4 0 0 0 0.81659 1 15485 15485 3.5965 0 1 5915100 55821 25744 36857 36878 54685 54685 0.09054637202541471 YVRKVRAY 8 Unmodified _YVRKVRAY_ 0 0 0 REV__ENSG00000168350|ENST00000305631|DEGS2 REV__ENSG00000168350|ENST00000305631|DEGS2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 352.21136474609375 3 352.210059 1053.60835 NaN NaN NaN NaN NaN NaN NaN 120.71 1 116.25 115.75 116.75 -4.467 0 0 0 0.23538 1 23242 23242 0.62683 0.61855 1 + 55822 18017 36858 36879 54686 54686 0.08368861670987826 YVRLLKGVG 9 Unmodified _YVRLLKGVG_ 0 0 0 REV__nc|ENSG00000189091|Q15393-3|SF3B3 REV__nc|ENSG00000189091|Q15393-3|SF3B3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.5534362792969 3 335.54656 1003.61785 NaN NaN NaN NaN NaN NaN NaN 4.9468 1 4.9468 4.4468 5.4468 0 0 0 0 0.19635 1 186 186 0 0 1 + 55823 19192 36859 36880 54687 54687 0.11618629956535642 YVRLLKGVG 9 Unmodified _YVRLLKGVG_ 0 0 0 REV__nc|ENSG00000189091|Q15393-3|SF3B3 REV__nc|ENSG00000189091|Q15393-3|SF3B3 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 335.5466613769531 3 335.54656 1003.61785 NaN NaN NaN NaN NaN NaN NaN 179.91 1 179.91 179.41 180.41 0 0 0 0 0.19624 1 37270 37270 0.073264 0 1 + 55824 19192 36859 36880 54688 54688 0.11618629956535642 YVRMQANKD 9 Unmodified _YVRMQANKD_ 0 0 0 tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1 tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1 tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 375.2182312011719 3 375.522086 1123.54443 0.17647 6.6268E-05 -0.43474 -0.00016326 -0.25827 -9.6988E-05 375.5219171441961 63.646 0.51924 60.23 59.937 60.457 -3.4158 21 14 2 0 0 0 0.64764 1 11834 11834 0.073264 0 1 1424900 55825 26301 36860 36881 54689 54689 -0.012402865482727066 YVRSRSIRS 9 Unmodified _YVRSRSIRS_ 0 0 0 ARFGEF2-SULF2|2|fusion;ARFGEF2-SULF2|1|fusion;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2 ARFGEF2-SULF2|2|fusion ARFGEF2-SULF2|2|fusion MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 375.21636962890625 3 375.215873 1122.62579 NaN NaN NaN NaN NaN NaN NaN 143.41 1 138.51 138.01 139.01 -4.8982 0 0 0 0.19632 1 27680 27680 0.40827 0 1 55826 199 36861 36882 54690 54690 0.06938157205991047 YVRVWAEYD 9 Unmodified _YVRVWAEYD_ 0 0 0 ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;CACNA1A|p.P2221Rfs*45|1|0.48|ENSG00000141837|chr19:13208879-13208879|A/-|frameshift_variant;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A ENSG00000141837|ENST00000360228|CACNA1A ENSG00000141837|ENST00000360228|CACNA1A MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 400.8495788574219 3 400.860984 1199.56112 NaN NaN NaN NaN NaN NaN NaN 10.05 1 8.9561 8.4561 9.4561 -1.0936 0 0 0 0.1963 1 1119 1119 0 0 1 55827 4396 36862 36883 54691 54691 -0.030674623906861598 YVSPTFQD 8 Unmodified _YVSPTFQD_ 0 0 0 ENSG00000181523|ENST00000326317|SGSH ENSG00000181523|ENST00000326317|SGSH ENSG00000181523|ENST00000326317|SGSH MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 478.72247314453125 2 478.721633 955.428712 0.25542 0.00012228 1.1505 0.00055078 1.4059 0.00067305 478.7220278604925 99.806 1.4084 95.817 95.107 96.516 -3.9895 76 40 2 0 0 0 0.72861 1 19056 19056 10.183 0 1 4247500 55828 6726 36863 36884 54692 54692 -0.05078487127468634 YVTFKITAV 9 Unmodified _YVTFKITAV_ 0 0 0 REV__ENSG00000118434|ENST00000237201|SPACA1 REV__ENSG00000118434|ENST00000237201|SPACA1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 347.8975830078125 3 347.870821 1040.59063 NaN NaN NaN NaN NaN NaN NaN 9.4301 1 8.6358 8.1358 9.1358 -0.79424 0 0 0 0.23508 1 1088 1088 0 0 1 + 55829 15553 36864 36885 54693 54693 0.0719610162545905 YVVGGHDAP 9 Unmodified _YVVGGHDAP_ 0 0 0 ENSG00000102271|ENST00000373119|KLHL4;nc|ENSG00000102271|Q9C0H6-2|KLHL4 ENSG00000102271|ENST00000373119|KLHL4 ENSG00000102271|ENST00000373119|KLHL4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 458.2236633300781 2 457.721967 913.429381 0.029082 1.3312E-05 0.15704 7.1883E-05 0.18613 8.5194E-05 457.72195699896855 58.978 0.74511 55.726 55.348 56.093 -3.2517 34 20 2 0 0 0 0.22334 1 10950 10950 36.044 5.8194 1 1471300 55830 2121 36865 36886 54694 54694 -0.030796476877753776 YVVGGHDAP 9 Unmodified _YVVGGHDAP_ 0 0 0 ENSG00000102271|ENST00000373119|KLHL4;nc|ENSG00000102271|Q9C0H6-2|KLHL4 ENSG00000102271|ENST00000373119|KLHL4 ENSG00000102271|ENST00000373119|KLHL4 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.22308349609375 2 457.721967 913.429381 0.097145 4.4465E-05 0.078414 3.5892E-05 0.17556 8.0357E-05 457.7218964639377 58.941 0.73195 55.736 55.368 56.1 -3.2052 38 20 2 0 0 0 0.38188 1 11049 11049 26.884 0 1 1638800 55831 2121 36865 36886 54695 54695 -0.030796476877753776 YVVLRYLMGF 10 Unmodified _YVVLRYLMGF_ 0 0 0 ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298|ARHGAP8 ENSG00000241484|ENST00000356099|ARHGAP8 ENSG00000241484|ENST00000356099|ARHGAP8 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.76513671875 2 630.844102 1259.67365 NaN NaN NaN NaN NaN NaN NaN 91.907 1 87.812 87.312 88.312 -4.0946 0 0 0 0.22588 1 17504 17504 7.2892 0.56607 1 55832 7852 36866 36887 54696 54696 0.05420095081785803 YVVPINLFYSY 11 Unmodified _YVVPINLFYSY_ 0 0 0 REV__tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 REV__tr|U7SPW6|U7SPW6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01645PE=4SV=1 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.2334289550781 3 459.907823 1376.70164 NaN NaN NaN NaN NaN NaN NaN 134.58 1 129.71 129.21 130.21 -4.8726 0 0 0 0.22632 1 25852 25852 0.172 0 1 + 55833 25007 36867 36888 54697 54697 0.02835696542911137 YVVPYVSECDA 11 Unmodified _YVVPYVSECDA_ 0 0 0 REV__nc|ENSG00000292277|Q9UJ98-2|STAG3 REV__nc|ENSG00000292277|Q9UJ98-2|STAG3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.7783813476562 2 622.778822 1243.54309 NaN NaN NaN NaN NaN NaN NaN 51.067 1 48.184 47.684 48.684 -2.8824 0 0 0 0.23324 1 9698 9698 5.7319 0.83484 1 + 55834 14206 36868 36889 54698 54698 -0.06893965427684634 YVVQLVNVFA 10 Unmodified _YVVQLVNVFA_ 0 0 0 ENSG00000139874|ENST00000267377|SSTR1 ENSG00000139874|ENST00000267377|SSTR1 ENSG00000139874|ENST00000267377|SSTR1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 576.3217163085938 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 120.95 1 116.42 115.92 116.92 -4.5305 0 0 0 0.22588 1 23291 23291 10.074 1.3285 1 55835 4268 36869 36890 54699 54699 0.06935175545527272 YVVRRRFKIRR 11 Unmodified _YVVRRRFKIRR_ 0 0 0 MYO5A|p.Y834F|1|0.34|ENSG00000197535|chr15:52375380-52375380|T/A|missense_variant MYO5A|p.Y834F|1|0.34|ENSG00000197535|chr15:52375380-52375380|T/A|missense_variant MYO5A|p.Y834F|1|0.34|ENSG00000197535|chr15:52375380-52375380|T/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 517.1123657226562 3 516.995182 1547.96372 NaN NaN NaN NaN NaN NaN NaN 173.1 1 168.2 167.7 168.7 -4.8977 0 0 0 0.23698 1 34358 34358 0.08335 0.08335 1 55836 12193 36870 36891 54700 54700 0.2116538019286054 YVVRRRYKIRR 11 Unmodified _YVVRRRYKIRR_ 0 0 0 nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant nc|ENSG00000197535|Q9Y4I1-2|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2625122070312 3 522.32682 1563.95863 0.20748 0.00010837 3.5039 0.0018302 3.7114 0.0019386 522.3281939398829 152.98 0.10683 152.98 152.92 153.03 0 4 2 2 0 0 0 0.66298 1 30648 30648 0 0 1 1570100 55837 7376 36871 36892 54701 54701 0.1992107633022897 YVVRRRYKIRR 11 Unmodified _YVVRRRYKIRR_ 0 0 0 nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant nc|ENSG00000197535|Q9Y4I1-2|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.271240234375 3 522.32682 1563.95863 NaN NaN NaN NaN NaN NaN NaN 156.21 1 151.43 150.93 151.93 -4.7834 0 0 0 0.22632 1 31061 31061 0 0 1 55838 7376 36871 36892 54702 54702 0.1992107633022897 YVVVLVIR 8 Unmodified _YVVVLVIR_ 0 0 0 REV__nc|ENSG00000183484|Q9UNW8-3|GPR132 REV__nc|ENSG00000183484|Q9UNW8-3|GPR132 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 481.2439880371094 2 480.81567 959.616788 NaN NaN NaN NaN NaN NaN NaN 144.84 1 139.89 139.39 140.39 -4.9445 0 0 0 0.21486 1 27986 27986 5.7604 3.1829 1 + 55839 18839 36872 36893 54703 54703 0.1353641558760046 YVWLRHKF 8 Unmodified _YVWLRHKF_ 0 0 0 REV__PRIM1|p.C170*|1|0.29|ENSG00000198056|chr12:56746104-56746117|CTGATTCATCACAG/-|frameshift_variant REV__PRIM1|p.C170*|1|0.29|ENSG00000198056|chr12:56746104-56746117|CTGATTCATCACAG/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 574.8723754882812 2 574.821818 1147.62908 NaN NaN NaN NaN NaN NaN NaN 11.207 1 10.303 9.803 10.803 -0.90401 0 0 0 0.21486 1 1466 1466 0 0 1 + 55840 19387 36873 36894 54704 54704 0.06117452050625616 YVWRWKQFLSR 11 Unmodified _YVWRWKQFLSR_ 0 0 0 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 523.684814453125 3 523.62101 1567.8412 NaN NaN NaN NaN NaN NaN NaN 114.49 1 114.49 113.99 114.99 0 0 0 0 0.22632 1 22520 22520 0 0 1 55841 3477 36874 36895 54705 54705 0.07999498670756111 YVYEFDYDF 9 Unmodified _YVYEFDYDF_ 0 0 0 REV__nc|ENSG00000163875|Q9HAF1-2|MEAF6 REV__nc|ENSG00000163875|Q9HAF1-2|MEAF6 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.76025390625 2 630.758412 1259.50227 NaN NaN NaN NaN NaN NaN NaN 166.94 1 162.05 161.55 162.55 -4.8916 0 0 0 0.19656 1 32764 32764 0.40827 0 1 + 55842 24133 36875 36896 54706 54706 -0.11709983475680019 YVYETCVVEV 10 Unmodified _YVYETCVVEV_ 0 0 0 REV__B3GAT1|p.R68C|1|0.37|ENSG00000109956|chr11:134384099-134384099|G/A|missense_variant REV__B3GAT1|p.R68C|1|0.37|ENSG00000109956|chr11:134384099-134384099|G/A|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 602.28125 2 602.28374 1202.55293 NaN NaN NaN NaN NaN NaN NaN 57.142 1 53.952 53.452 54.452 -3.1895 0 0 0 0.22588 1 10604 10604 6.7232 0.99131 1 + 55843 13168 36876 36897 54707 54707 -0.04024777422318948 YVYMGLLA 8 Unmodified _YVYMGLLA_ 0 0 0 ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;DPAGT1|p.T234Hfs*116|1|0.35|ENSG00000172269|chr11:119098432-119098433|-/A|frameshift_variant;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000533687.1_1_11:118969111-118971155:-|nuORF ENST00000414373.5_1_11:118967985-118971732:-|nuORF ENST00000414373.5_1_11:118967985-118971732:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 465.2445068359375 2 465.243689 928.472826 NaN NaN NaN NaN NaN NaN NaN 162.15 1 157.36 156.86 157.86 -4.7898 0 0 0 0.23711 1 32256 32256 0.12286 0.11459 1 55844 882 36877 36898 54708 54708 0.005728257651639979 YVYTHIRN 8 Unmodified _YVYTHIRN_ 0 0 0 REV__ENSG00000149507|ENST00000278855|OOSP2 REV__ENSG00000149507|ENST00000278855|OOSP2 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 533.2782592773438 2 533.277441 1064.54033 NaN NaN NaN NaN NaN NaN NaN 12.362 1 12.362 11.862 12.862 0 0 0 0 0.2396 1 1718 1718 0.0082765 0 1 + 55845 17011 36878 36899 54709 54709 0.01063992020317528 YWEVAQEKQGA 11 Unmodified _YWEVAQEKQGA_ 0 0 0 REV__nc|ENSG00000021574|Q9UBP0-4|SPAST REV__nc|ENSG00000021574|Q9UBP0-4|SPAST MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 437.2280578613281 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 79.621 1 76.111 75.611 76.611 -3.5102 0 0 0 0.22632 1 15550 15550 5.4027 2.3304 1 + 55846 13984 36879 36900 54710 54710 -0.026887096788186682 YWGLRGEGWRV 11 Unmodified _YWGLRGEGWRV_ 0 0 0 ENST00000465139.6_1_15:69072233-69072278:-|nuORF ENST00000465139.6_1_15:69072233-69072278:-|nuORF ENST00000465139.6_1_15:69072233-69072278:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 460.23883056640625 3 460.238678 1377.6942 NaN NaN NaN NaN NaN NaN NaN 70.784 1 67.204 66.704 67.704 -3.5798 0 0 0 0.22632 1 13343 13343 0.026206 0.02025 1 55847 10116 36880 36901 54711 54711 0.020464017858330408 YWGLRGEGWRV 11 Unmodified _YWGLRGEGWRV_ 0 0 0 ENST00000465139.6_1_15:69072233-69072278:-|nuORF ENST00000465139.6_1_15:69072233-69072278:-|nuORF ENST00000465139.6_1_15:69072233-69072278:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 460.2388000488281 3 460.238678 1377.6942 NaN NaN NaN NaN NaN NaN NaN 73.37 1 69.776 69.276 70.276 -3.594 0 0 0 0.22632 1 13926 13926 0.00056442 0 1 55848 10116 36880 36901 54712 54712 0.020464017858330408 YWHVAIGHVY 10 Unmodified _YWHVAIGHVY_ 0 0 0 REV__ENST00000459805.5_1_1:155184905-155186549:-|nuORF REV__ENST00000459805.5_1_1:155184905-155186549:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 622.7744750976562 2 622.81419 1243.61383 0.40379 0.00025149 3.3537 0.0020887 3.7575 0.0023402 622.8166114842411 149.36 0.21182 149.36 149.16 149.37 0 6 5 2 0 0 0 0.53005 1 29901 29901 0.26539 0.23918 1 1462200 + 55849 18567 36881 36902 54713 54713 0.0017654046280313196 YWLGTSFVA 9 Unmodified _YWLGTSFVA_ 0 0 0 REV__ENSG00000174607|ENST00000310836|UGT8 REV__ENSG00000174607|ENST00000310836|UGT8 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.264892578125 2 522.263468 1042.51238 NaN NaN NaN NaN NaN NaN NaN 28.251 1 26.255 25.755 26.755 -1.9962 0 0 0 0.19674 1 4760 4760 2.6312 0 1 + 55850 18423 36882 36903 54714 54714 -0.007173309597419575 YWLQAPGYRWE 11 Unmodified _YWLQAPGYRWE_ 0 0 0 REV__TAF1L|p.R366Q|1|0.36|ENSG00000122728|chr9:32634483-32634483|C/T|missense_variant REV__TAF1L|p.R366Q|1|0.36|ENSG00000122728|chr9:32634483-32634483|C/T|missense_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.265380859375 3 490.238455 1467.69353 NaN NaN NaN NaN NaN NaN NaN 107.41 1 103.27 102.77 103.77 -4.135 0 0 0 0.22632 1 20658 20658 0.172 0.14059 1 + 55851 24769 36883 36904 54715 54715 -0.021604376538562065 YWLTKKYLIRW 11 Unmodified _YWLTKKYLIRW_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.3924560546875 2 785.450654 1568.88676 NaN NaN NaN NaN NaN NaN NaN 97.902 1 97.902 97.402 98.402 0 0 0 0 0.22632 1 19189 19189 0.094841 0.087559 1 + 55852 19354 36884 36905 54716 54716 0.12506724133140779 YWRILEFDYEM 11 Unmodified _YWRILEFDYEM_ 0 0 0 ENSG00000136982|ENST00000313655|DSCC1 ENSG00000136982|ENST00000313655|DSCC1 ENSG00000136982|ENST00000313655|DSCC1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 522.2705688476562 3 522.242877 1563.7068 NaN NaN NaN NaN NaN NaN NaN 37.225 1 34.757 34.257 35.257 -2.4688 0 0 0 0.22632 1 6873 6873 1.4551 0.8698 1 55853 4058 36885 36906 54717 54717 -0.05250367656799426 YWRILEFDYEM 11 Unmodified _YWRILEFDYEM_ 0 0 0 ENSG00000136982|ENST00000313655|DSCC1 ENSG00000136982|ENST00000313655|DSCC1 ENSG00000136982|ENST00000313655|DSCC1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2766723632812 3 522.242877 1563.7068 NaN NaN NaN NaN NaN NaN NaN 128.32 1 123.57 123.07 124.07 -4.7408 0 0 0 0.22632 1 24689 24689 0.50596 0.33396 1 55854 4058 36885 36906 54718 54718 -0.05250367656799426 YWRNLRKQDYQ 11 Unmodified _YWRNLRKQDYQ_ 0 0 0 ENSG00000168917|ENST00000446465|SLC35G2 ENSG00000168917|ENST00000446465|SLC35G2 ENSG00000168917|ENST00000446465|SLC35G2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.4005737304688 2 785.399681 1568.78481 NaN NaN NaN NaN NaN NaN NaN 173.96 1 169.08 168.58 169.58 -4.8845 0 0 0 0.22632 1 34551 34551 0.03141 0 1 55855 5951 36886 36907 54719 54719 0.023168260434658805 YWRRWNRFCRR 11 Unmodified _YWRRWNRFCRR_ 0 0 0 nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;CACNA1C|p.E1194Gfs*8|1|0.17|ENSG00000151067|chr12:2608669-2608670|-/G|frameshift_variant;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;CACNA1C|p.A2072Pfs*18|1|0.55|ENSG00000151067|chr12:2688729-2688729|G/-|frameshift_variant;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;CACNA1C|p.P2073Qfs*17|1|0.21|ENSG00000151067|chr12:2688733-2688733|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C nc|ENSG00000151067|Q13936-2|CACNA1C nc|ENSG00000151067|Q13936-2|CACNA1C MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 566.9052734375 3 566.960143 1697.8586 NaN NaN NaN NaN NaN NaN NaN 167.41 1 162.46 161.96 162.96 -4.948 0 0 0 0.23698 1 32929 32929 0 0 1 55856 359 36887 36908 54720 54720 0.03758515724780409 YWRSVRAE 8 Unmodified _YWRSVRAE_ 0 0 0 REV__ENSG00000183048|ENST00000350690|SLC25A10 REV__ENSG00000183048|ENST00000350690|SLC25A10 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 533.2750854492188 2 533.775065 1065.53558 0.74522 0.00039778 -2.7731 -0.0014802 -2.0278 -0.0010824 534.276738224843 117.46 0.48876 112.84 112.68 113.17 -4.6106 22 13 2 0 0 0 0.97966 1 22548 22548 11.64 5.8799 1 1015700 + 55857 18815 36888 36909 54721 54721 0.005431078775700371 YWSDLVSK 8 Unmodified _YWSDLVSK_ 0 0 0 TEX2|p.S903Vfs*17|1|0.22|ENSG00000136478|chr17:64160898-64160899|-/C|frameshift_variant;ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2 TEX2|p.S903Vfs*17|1|0.22|ENSG00000136478|chr17:64160898-64160899|-/C|frameshift_variant TEX2|p.S903Vfs*17|1|0.22|ENSG00000136478|chr17:64160898-64160899|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 333.2168273925781 3 333.171159 996.491647 NaN NaN NaN NaN NaN NaN NaN 138.73 1 134.08 133.58 134.58 -4.6439 0 0 0 0.21486 1 27394 27394 1.4819 0 1 55858 4013 36889 36910 54722 54722 -0.006739213394212129 YWSGEEVHRF 10 Unmodified _YWSGEEVHRF_ 0 0 0 REV__nc|ENSG00000003400|Q92851-6|CASP10 REV__nc|ENSG00000003400|Q92851-6|CASP10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.2160339355469 3 437.203522 1308.58874 NaN NaN NaN NaN NaN NaN NaN 142.6 1 137.7 137.2 138.2 -4.8982 0 0 0 0.22588 1 27514 27514 3.5871 1.6807 1 + 55859 13828 36890 36911 54723 54723 -0.05321559130447895 YWSGEEVHRF 10 Unmodified _YWSGEEVHRF_ 0 0 0 REV__nc|ENSG00000003400|Q92851-6|CASP10 REV__nc|ENSG00000003400|Q92851-6|CASP10 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 437.215576171875 3 437.203522 1308.58874 NaN NaN NaN NaN NaN NaN NaN 156.36 1 151.09 150.59 151.59 -5.2712 0 0 0 0.22588 1 30323 30323 3.5871 0.74377 1 + 55860 13828 36890 36911 54724 54724 -0.05321559130447895 YWWEFIRQWIR 11 Unmodified _YWWEFIRQWIR_ 0 0 0 REV__ENST00000497457.5_1_1:113121036-113161548:-|nuORF REV__ENST00000497457.5_1_1:113121036-113161548:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 561.5435180664062 3 561.624532 1681.85177 0.29204 0.00016402 0.63921 0.00035899 0.93125 0.00052301 561.9598296438165 140.53 0.14006 140.53 140.47 140.61 0 5 3 2 0 0 0 0.96227 1 27979 27979 0.073264 0.073264 1 7386700 + 55861 22403 36891 36912 54725 54725 0.0381148132519229 YWYFYRREPFF 11 Unmodified _YWYFYRREPFF_ 0 0 0 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 558.7388916015625 3 558.601504 1672.78268 NaN NaN NaN NaN NaN NaN NaN 164.69 1 159.9 159.4 160.4 -4.7898 0 0 0 0.22632 1 32930 32930 0.026206 0.026206 1 + 55862 14381 36892 36913 54726 54726 -0.026796026943657125 YWYIRDSREIK 11 Unmodified _YWYIRDSREIK_ 0 0 0 REV__ENSG00000155657|ENST00000589042|TTN REV__ENSG00000155657|ENST00000589042|TTN MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 510.2929382324219 3 510.268414 1527.78341 NaN NaN NaN NaN NaN NaN NaN 132.49 1 127.85 127.35 128.35 -4.6399 0 0 0 0.22632 1 26118 26118 1.4551 1.4546 1 + 55863 17221 36893 36914 54727 54727 0.04063191954719514 YYAAHNHWPFG 11 Unmodified _YYAAHNHWPFG_ 0 0 0 ENSG00000186912|ENST00000374519|P2RY4 ENSG00000186912|ENST00000374519|P2RY4 ENSG00000186912|ENST00000374519|P2RY4 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 681.8607177734375 2 681.804354 1361.59415 NaN NaN NaN NaN NaN NaN NaN 166.66 1 161.68 161.18 162.18 -4.9811 0 0 0 0.23594 1 32696 32696 3.5965 0 1 55864 7083 36894 36915 54728 54728 -0.07217835547976392 YYALEVLYFK 10 Unmodified _YYALEVLYFK_ 0 0 0 ENST00000415778.1_1_6:93801823-93802168:-|nuORF ENST00000415778.1_1_6:93801823-93802168:-|nuORF ENST00000415778.1_1_6:93801823-93802168:-|nuORF MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.2342834472656 3 436.900668 1307.68018 0.028133 1.2291E-05 -0.042981 -1.8779E-05 -0.014849 -6.4875E-06 436.90071712131186 12.259 0.13783 12.259 12.172 12.31 0 5 3 2 0 0 0 0.75765 1 1698 1698 3.3196 0 1 552830 55865 9616 36895 36916 54729 54729 0.038643115141667295 YYDCRYSYQ 9 Unmodified _YYDCRYSYQ_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7598876953125 2 630.753138 1259.49172 NaN NaN NaN NaN NaN NaN NaN 144.8 1 139.86 139.36 140.36 -4.9445 0 0 0 0.19624 1 27977 27977 0 0 1 + 55866 14429 36896 36917 54730 54730 -0.1276428940172991 YYDEDYDDEQR 11 Unmodified _YYDEDYDDEQR_ 0 0 0 ENSG00000180447|ENST00000298743|GAS1 ENSG00000180447|ENST00000298743|GAS1 ENSG00000180447|ENST00000298743|GAS1 MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 303.0570068359375 5 302.917916 1509.5532 0.19577 5.9304E-05 0.90751 0.0002749 1.1033 0.00033421 302.91773059909184 179.45 1.3466 174.58 173.77 175.12 -4.868 65 38 2 0 0 0 0.96227 1 35590 35590 0.08335 0.08335 1 12002000 55867 6675 36897 36918 54731 54731 -0.1811973095943813 YYDEKEIER 9 Unmodified _YYDEKEIER_ 0 0 0 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.76123046875 2 622.793318 1243.57208 NaN NaN NaN NaN NaN NaN NaN 74.303 1 70.709 70.209 71.209 -3.594 0 0 0 0.19679 1 14111 14111 0.12781 0.06395 1 55868 4527 36898 36919 54732 54732 -0.039961048070381366 YYDSLNQYNN 10 Unmodified _YYDSLNQYNN_ 0 0 0 REV__tr|U7SSX8|U7SSX8_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01539PE=4SV=1 REV__tr|U7SSX8|U7SSX8_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01539PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 1294.5328369140625 1 1293.53822 1292.53095 0.60997 0.00078902 -4.3164 -0.0055834 -3.7064 -0.0047944 1293.5285626305229 168.06 0.20203 163.17 163.09 163.29 -4.8916 9 5 3 0 0 0 0.75565 1 33123 33123 3.9444 1.6417 1 72023000 + 55869 25074 36899 36920 54733 54733 -0.10361865846493856 YYEYEWTYDSN 11 Unmodified _YYEYEWTYDSN_ 0 0 0 REV__MRAP2|p.V63Cfs*40|1|0.38|ENSG00000135324|chr6:84062945-84062946|-/T|frameshift_variant REV__MRAP2|p.V63Cfs*40|1|0.38|ENSG00000135324|chr6:84062945-84062946|-/T|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 511.5442810058594 3 511.533262 1531.57796 NaN NaN NaN NaN NaN NaN NaN 162.41 1 157.62 157.12 158.12 -4.7898 0 0 0 0.23698 1 32319 32319 0.094841 0.011491 1 + 55870 16259 36900 36921 54734 54734 -0.16657051086008323 YYFRSIEEKAY 11 Unmodified _YYFRSIEEKAY_ 0 0 0 REV__tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1 REV__tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.260009765625 3 490.241753 1467.70343 NaN NaN NaN NaN NaN NaN NaN 124.86 1 120.21 119.71 120.71 -4.6495 0 0 0 0.22632 1 24023 24023 7.0341 7.0335 1 + 55871 25217 36901 36922 54735 54735 -0.01171294439131998 YYGVTVNHSY 10 Unmodified _YYGVTVNHSY_ 0 0 0 REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L MULTI-MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 602.27880859375 2 601.77747 1201.54039 0.17 0.0001023 -0.75045 -0.0004516 -0.58045 -0.0003493 601.7770651054441 70.064 0.14024 70.064 69.995 70.135 0 5 3 2 0 0 0 0.67319 1 13555 13555 13.906 3.0821 1 770840 + 55872 15201 36902 36923 54736 54736 -0.052320527703159314 YYGWDWEADCS 11 Unmodified _YYGWDWEADCS_ 0 0 0 ENSG00000115649|ENST00000360507|CNPPD1 ENSG00000115649|ENST00000360507|CNPPD1 ENSG00000115649|ENST00000360507|CNPPD1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 697.7532958984375 2 697.753335 1393.49212 NaN NaN NaN NaN NaN NaN NaN 4.9211 1 4.2948 3.7948 4.7948 -0.62626 0 0 0 0.22632 1 181 181 0 0 1 55873 2875 36903 36924 54737 54737 -0.1888891447254082 YYHNYPFFFWF 11 Unmodified _YYHNYPFFFWF_ 0 0 0 ENST00000605924.5_1_13:52793665-52801187:-|nuORF ENST00000605924.5_1_13:52793665-52801187:-|nuORF ENST00000605924.5_1_13:52793665-52801187:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.372314453125 2 815.861338 1629.70812 NaN NaN NaN NaN NaN NaN NaN 119.96 1 115.49 114.99 115.99 -4.467 0 0 0 0.22632 1 23094 23094 0 0 1 55874 11740 36904 36925 54738 54738 -0.08154365505743044 YYHQYYHQYDY 11 Unmodified _YYHQYYHQYDY_ 0 0 0 REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 547.7869262695312 3 548.224762 1641.65246 0.32486 0.00017809 2.9977 0.0016434 3.3225 0.0018215 548.5599779821565 125.94 0.1044 121.18 121.11 121.21 -4.7681 4 2 2 0 0 0 0.96227 1 24159 24159 0.094841 0 1 309530 + 55875 22538 36905 36926 54739 54739 -0.14270243483997547 YYHSYDRSPG 10 Unmodified _YYHSYDRSPG_ 0 0 0 REV__ENSG00000171345|ENST00000361566|KRT19 REV__ENSG00000171345|ENST00000361566|KRT19 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 622.7821655273438 2 622.770177 1243.5258 NaN NaN NaN NaN NaN NaN NaN 78.153 1 74.494 73.994 74.994 -3.6588 0 0 0 0.22588 1 14887 14887 6.7232 2.7788 1 + + 55876 13524 36906 36927 54740 54740 -0.08622124918474583 YYIEGTNLERL 11 Unmodified _YYIEGTNLERL_ 0 0 0 REV__tr|U7T216|U7T216_FUSNUTIGR03545familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00432PE=4SV=1 REV__tr|U7T216|U7T216_FUSNUTIGR03545familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00432PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 458.23876953125 3 457.56987 1369.68778 0.36001 0.00016473 -0.19322 -8.841E-05 0.16679 7.6319E-05 457.5697535026142 120.31 0.73283 115.85 115.51 116.24 -4.467 60 20 4 0 0 0 0.806 1 23110 23110 2.8433 0.21205 1 7051300 + 55877 25303 36907 36928 54741 54741 0.017724190438229925 YYIRWKHYERM 11 Unmodified _YYIRWKHYERM_ 0 0 0 REV__nc|ENSG00000009950|Q9NP71-5|MLXIPL REV__nc|ENSG00000009950|Q9NP71-5|MLXIPL MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 823.3073120117188 2 822.908827 1643.8031 NaN NaN NaN NaN NaN NaN NaN 168.1 1 163.15 162.65 163.65 -4.948 0 0 0 0.22632 1 33124 33124 0.50596 0 1 + 55878 13914 36908 36929 54742 54742 0.006952446938157664 YYLEQDWWSGP 11 Unmodified _YYLEQDWWSGP_ 0 0 0 REV__ENSG00000105675|ENST00000262623|ATP4A REV__ENSG00000105675|ENST00000262623|ATP4A MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.8665771484375 3 481.878704 1442.61428 NaN NaN NaN NaN NaN NaN NaN 10.189 1 10.189 9.6891 10.689 0 0 0 0 0.23698 1 1256 1256 0 0 1 + 55879 15009 36909 36930 54743 54743 -0.08932129398681354 YYLMNLNI 8 Unmodified _YYLMNLNI_ 0 0 0 ENST00000442555.5_1_22:29904448-29924274:-|nuORF;ENSG00000100296|ENST00000490103|THOC5 ENST00000442555.5_1_22:29904448-29924274:-|nuORF ENST00000442555.5_1_22:29904448-29924274:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 522.2767333984375 2 522.265153 1042.51575 NaN NaN NaN NaN NaN NaN NaN 147.74 1 142.68 142.18 143.18 -5.0595 0 0 0 0.22676 1 28607 28607 3.5871 2.3722 1 55880 1948 36910 36931 54744 54744 -0.0038040417741740384 YYLNYRDVLHK 11 Unmodified _YYLNYRDVLHK_ 0 0 0 REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 742.3856201171875 2 742.388251 1482.76195 NaN NaN NaN NaN NaN NaN NaN 157.42 1 152.15 151.65 152.65 -5.2712 0 0 0 0.23698 1 30535 30535 1.4819 0.28856 1 + 55881 16381 36911 36932 54745 54745 0.039878069259884796 YYLPYYKRERN 11 Unmodified _YYLPYYKRERN_ 0 0 0 EIF2AK3|p.D965Gfs*7|1|0.04|ENSG00000172071|chr2:88570965-88570966|-/GTTTTCATTAAAATAC|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3 EIF2AK3|p.D965Gfs*7|1|0.04|ENSG00000172071|chr2:88570965-88570966|-/GTTTTCATTAAAATAC|frameshift_variant EIF2AK3|p.D965Gfs*7|1|0.04|ENSG00000172071|chr2:88570965-88570966|-/GTTTTCATTAAAATAC|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 522.2686767578125 3 522.268414 1563.78341 NaN NaN NaN NaN NaN NaN NaN 90.606 1 90.606 90.106 91.106 0 0 0 0 0.22632 1 17703 17703 0.50596 0 1 55882 927 36912 36933 54746 54746 0.02407191954694099 YYLSQMYMNP 10 Unmodified _YYLSQMYMNP_ 0 0 0 REV__ENSG00000180357|ENST00000326648|ZNF609 REV__ENSG00000180357|ENST00000326648|ZNF609 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 437.22955322265625 3 437.191237 1308.55188 NaN NaN NaN NaN NaN NaN NaN 39.219 1 39.219 38.719 39.719 0 0 0 0 2.8426 1 7279 7279 3.8763 0.28366 1 + 55883 18684 36913 36934 54747 54747 -0.09005315062859154 YYLSRVQSA 9 Unmodified _YYLSRVQSA_ 0 0 0 REV__nc|ENSG00000173482|P28827|PTPRM REV__nc|ENSG00000173482|P28827|PTPRM MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 543.78125 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 129.16 1 124.42 123.92 124.92 -4.7408 0 0 0 0.18489 1 24855 24855 1.2148 0 1 + 55884 18357 36914 36935 54748 54748 0.01120554954900399 YYLTSSNAY 9 Unmodified _YYLTSSNAY_ 0 0 0 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 541.2757568359375 2 541.245472 1080.47639 NaN NaN NaN NaN NaN NaN NaN 70.283 1 67.034 66.534 67.534 -3.2492 0 0 0 0.19679 1 13677 13677 1.6919 1.2836 1 + 55885 18616 36915 36936 54749 54749 -0.06062832927273121 YYNEKGEVEN 10 Unmodified _YYNEKGEVEN_ 0 0 0 REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 622.775146484375 2 622.775125 1243.5357 NaN NaN NaN NaN NaN NaN NaN 23.02 1 21.467 20.967 21.967 -1.5532 0 0 0 2.8426 1 3956 3956 0 0 1 + 55886 25320 36916 36937 54750 54750 -0.07632981703727637 YYRILRSVKNR 11 Unmodified _YYRILRSVKNR_ 0 0 0 tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1 tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1 tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2637634277344 3 489.956282 1466.84702 NaN NaN NaN NaN NaN NaN NaN 166.23 1 166.23 165.73 166.73 0 0 0 0 0.22632 1 33831 33831 0.2986 0.29264 1 55887 26453 36917 36938 54751 54751 0.13226597182460864 YYRRRHRHERT 11 Unmodified _YYRRRHRHERT_ 0 0 0 ENST00000507405.5_1_5:138755893-138773164:-|nuORF;ENSG00000170464|ENST00000302060|DNAJC18 ENST00000507405.5_1_5:138755893-138773164:-|nuORF ENST00000507405.5_1_5:138755893-138773164:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 815.373779296875 2 815.432713 1628.85087 NaN NaN NaN NaN NaN NaN NaN 120.63 1 120.63 120.13 121.13 0 0 0 0 0.22632 1 23777 23777 0.026206 0 1 55888 6071 36918 36939 54752 54752 0.061600797288747344 YYRRRHRHERT 11 Unmodified _YYRRRHRHERT_ 0 0 0 ENST00000507405.5_1_5:138755893-138773164:-|nuORF;ENSG00000170464|ENST00000302060|DNAJC18 ENST00000507405.5_1_5:138755893-138773164:-|nuORF ENST00000507405.5_1_5:138755893-138773164:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 543.786865234375 3 543.957567 1628.85087 NaN NaN NaN NaN NaN NaN NaN 161.73 1 156.59 156.09 157.09 -5.1438 0 0 0 0.22632 1 31409 31409 0.026206 0 1 55889 6071 36918 36939 54753 54753 0.061600797288747344 YYRRRHRHERT 11 Unmodified _YYRRRHRHERT_ 0 0 0 ENST00000507405.5_1_5:138755893-138773164:-|nuORF;ENSG00000170464|ENST00000302060|DNAJC18 ENST00000507405.5_1_5:138755893-138773164:-|nuORF ENST00000507405.5_1_5:138755893-138773164:-|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 815.370361328125 2 815.432713 1628.85087 NaN NaN NaN NaN NaN NaN NaN 169.73 1 164.85 164.35 165.35 -4.873 0 0 0 0.23698 1 33542 33542 1.0715 0.76443 1 55890 6071 36918 36939 54754 54754 0.061600797288747344 YYSFYCSPQP 10 Unmodified _YYSFYCSPQP_ 0 0 0 ENSG00000159346|ENST00000340990|ADIPOR1;ENST00000495562.5_1_1:202910703-202913132:-|nuORF ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000159346|ENST00000340990|ADIPOR1 MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 627.7604370117188 2 627.760432 1253.50631 NaN NaN NaN NaN NaN NaN NaN 8.8368 1 8.0425 7.5425 8.5425 -0.79424 0 0 0 0.22588 1 962 962 0 0 1 55891 5203 36919 36940 54755 54755 -0.11030217253573937 YYSMRSCNR 9 Unmodified _YYSMRSCNR_ 0 0 0 REV__DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant REV__DOCK8|p.E1615Dfs*7|1|0.05|ENSG00000107099|chr9:433933-433934|-/C|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 590.2555541992188 2 590.255325 1178.4961 NaN NaN NaN NaN NaN NaN NaN 128.82 1 128.82 128.32 129.32 0 0 0 0 0.23508 1 25442 25442 7.9102 1.187 1 + 55892 13739 36920 36941 54756 54756 -0.0860110345981866 YYSSKDYT 8 Unmodified _YYSSKDYT_ 0 0 0 REV__tr|U7STN4|U7STN4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01552PE=4SV=1 REV__tr|U7STN4|U7STN4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01552PE=4SV=1 MULTI-MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 343.22308349609375 3 342.818674 1025.43419 -0.22996 -7.8836E-05 0.23168 7.9425E-05 0.0017194 5.8944E-07 342.8186375411365 61.889 0.56428 58.928 58.58 59.145 -2.9614 28 15 2 0 0 0 0.86089 1 11974 11974 1.6526 0 1 2322500 + 55893 25117 36921 36942 54757 54757 -0.0775080833566335 YYTCSDID 8 Unmodified _YYTCSDID_ 0 0 0 REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.26617431640625 2 490.189308 978.364063 -0.28902 -0.00014168 0.46554 0.0002282 0.17652 8.6527E-05 490.18967202828213 79.061 0.59035 75.385 74.994 75.585 -3.676 21 16 2 0 0 0 1.0147 1 14993 14993 2.3027 0 1 523120 + 55894 19302 36922 36943 54758 54758 -0.12598429995773586 YYTDRFTVRY 10 Unmodified _YYTDRFTVRY_ 0 0 0 REV__THTPA|p.P43Lfs*3|1|0.2|ENSG00000259431|chr14:23556882-23556882|C/-|frameshift_variant REV__THTPA|p.P43Lfs*3|1|0.2|ENSG00000259431|chr14:23556882-23556882|C/-|frameshift_variant MULTI-SECPEP Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 461.5220642089844 3 461.894577 1382.6619 0.51361 0.00023723 -0.34732 -0.00016043 0.16628 7.6805E-05 461.89439305796395 48.068 0.52795 48.068 47.751 48.279 0 27 14 3 0 0 0 0.91149 1 9029 9029 1.7423 1.7423 1 1835800 + 55895 19878 36923 36944 54759 54759 -0.014124304077995475 YYTDRFTVRY 10 Unmodified _YYTDRFTVRY_ 0 0 0 REV__THTPA|p.P43Lfs*3|1|0.2|ENSG00000259431|chr14:23556882-23556882|C/-|frameshift_variant REV__THTPA|p.P43Lfs*3|1|0.2|ENSG00000259431|chr14:23556882-23556882|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 3 461.894577 1382.6619 -0.23142 -0.00010689 0.0029394 1.3577E-06 -0.22848 -0.00010553 461.8946672243432 51.027 0.67139 48.145 47.786 48.457 -2.8824 0.02604 6.6608E-05 NaN 3.5871 43 18 4 NaN NaN NaN NaN 0 NaN NaN 0 3445500 + 55896 19878 36923 36944 -0.014124304077995475 YYTDRFTVRY 10 Unmodified _YYTDRFTVRY_ 0 0 0 REV__THTPA|p.P43Lfs*3|1|0.2|ENSG00000259431|chr14:23556882-23556882|C/-|frameshift_variant REV__THTPA|p.P43Lfs*3|1|0.2|ENSG00000259431|chr14:23556882-23556882|C/-|frameshift_variant MULTI-MATCH Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 3 461.894577 1382.6619 -0.0032921 -1.5206E-06 0.03321 1.534E-05 0.029918 1.3819E-05 461.8946133764181 51.249 0.56277 48.204 47.875 48.437 -3.0453 0.085028 0.00010855 NaN 3.5871 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2817200 + 55897 19878 36923 36944 -0.014124304077995475 YYTSIMKELL 10 Unmodified _YYTSIMKELL_ 0 0 0 PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.T1897Rfs*17|1|0.06|ENSG00000004399|chr3:129556402-129556402|G/-|frameshift_variant;ENSG00000004399|ENST00000324093|PLXND1 PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant PLXND1|p.P1734Hfs*40|1|0.26|ENSG00000004399|chr3:129559716-129559716|G/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 630.7647705078125 2 630.830857 1259.64716 NaN NaN NaN NaN NaN NaN NaN 21.371 1 19.987 19.487 20.487 -1.3847 0 0 0 2.8426 1 3361 3361 0 0 1 55898 973 36924 36945 54760 54760 0.027723613998659857 YYVRAWVVFKL 11 Unmodified _YYVRAWVVFKL_ 0 0 0 ENSG00000116133|ENST00000371269|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 481.7708740234375 3 481.943091 1442.80744 NaN NaN NaN NaN NaN NaN NaN 129.44 1 129.44 128.94 129.94 0 0 0 0 0.22632 1 25571 25571 3.0723 2.4869 1 55899 2909 36925 36946 54761 54761 0.10375077179014625 YYYAKTGIY 9 Unmodified _YYYAKTGIY_ 0 0 0 tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1 tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1 tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1 MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 381.2102355957031 3 381.19033 1140.54916 NaN NaN NaN NaN NaN NaN NaN 97.525 1 97.525 97.025 98.025 0 0 0 0 0.1964 1 19114 19114 0.40827 0 1 55900 26202 36926 36947 54762 54762 -0.015490791338379495 YYYDPTTG 8 Unmodified _YYYDPTTG_ 0 0 0 RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant;ENSG00000003756|ENST00000347869|RBM5;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;RBM5|p.Y480C|1|0.24|ENSG00000003756|chr3:50110754-50110754|A/G|missense_variant RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 490.2640686035156 2 490.205815 978.397078 NaN NaN NaN NaN NaN NaN NaN 87.336 1 83.607 83.107 84.107 -3.7289 0 0 0 0.23749 1 16708 16708 0.12286 0 1 55901 970 36927 36948 54763 54763 -0.09298479881420008 YYYFSSRITLR 11 Unmodified _YYYFSSRITLR_ 0 0 0 ENST00000471759.5_1_1:76252774-76252855:+|nuORF ENST00000471759.5_1_1:76252774-76252855:+|nuORF ENST00000471759.5_1_1:76252774-76252855:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 490.2577209472656 3 490.257626 1467.75105 NaN NaN NaN NaN NaN NaN NaN 145.52 1 145.52 145.02 146.02 0 0 0 0 0.22632 1 29084 29084 0.172 0 1 55902 10214 36928 36949 54764 54764 0.035884045516922924 YYYMTQTEELK 11 Unmodified _YYYMTQTEELK_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;NLN|p.G628Dfs*29|1|0.22|ENSG00000123213|chr5:65812290-65812290|G/-|frameshift_variant ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 490.2587585449219 3 490.227004 1467.65918 NaN NaN NaN NaN NaN NaN NaN 108.91 1 104.46 103.96 104.96 -4.4518 0 0 0 0.22632 1 20901 20901 0.026206 0.025642 1 55903 3257 36929 36950 54765 54765 -0.05594066647654472 YYYQFAQDY 9 Unmodified _YYYQFAQDY_ 0 0 0 REV__ENSG00000198730|ENST00000361367|CTR9 REV__ENSG00000198730|ENST00000361367|CTR9 MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 630.7611694335938 2 630.764029 1259.5135 NaN NaN NaN NaN NaN NaN NaN 31.528 1 29.379 28.879 29.879 -2.1483 0 0 0 0.23508 1 5434 5434 11.64 0.84079 1 + 55904 19441 36930 36951 54766 54766 -0.10587161381499754 YYYRDRDWRWV 11 Unmodified _YYYRDRDWRWV_ 0 0 0 ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4730834960938 2 839.399681 1676.78481 NaN NaN NaN NaN NaN NaN NaN 168.15 1 163.26 162.76 163.76 -4.8916 0 0 0 0.23698 1 33131 33131 1.4819 1.1749 1 55905 7875 36931 36952 54767 54767 -0.02651173956542152 YYYRDRDWRWV 11 Unmodified _YYYRDRDWRWV_ 0 0 0 ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.493408203125 2 839.399681 1676.78481 NaN NaN NaN NaN NaN NaN NaN 168.16 1 163.27 162.77 163.77 -4.8916 0 0 0 0.23698 1 33135 33135 1.4819 1.1749 1 55906 7875 36931 36952 54768 54768 -0.02651173956542152 YYYRDRDWRWV 11 Unmodified _YYYRDRDWRWV_ 0 0 0 ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 839.4549560546875 2 839.399681 1676.78481 NaN NaN NaN NaN NaN NaN NaN 168.65 1 163.77 163.27 164.27 -4.873 0 0 0 0.23698 1 33256 33256 1.4819 1.4819 1 55907 7875 36931 36952 54769 54769 -0.02651173956542152 YYYRVPQYVRY 11 Unmodified _YYYRVPQYVRY_ 0 0 0 REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.4107666015625 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 110.86 1 110.86 110.36 111.36 0 0 0 0 0.23698 1 21804 21804 1.4819 0.28856 1 + 55908 19793 36932 36953 54770 54770 0.015960934430268026 YYYRVPQYVRY 11 Unmodified _YYYRVPQYVRY_ 0 0 0 REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1 1 785.396240234375 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 110.89 1 110.89 110.39 111.39 0 0 0 0 0.23698 1 21810 21810 1.4819 0.15237 1 + 55909 19793 36932 36953 54771 54771 0.015960934430268026 YYYRVPQYVRY 11 Unmodified _YYYRVPQYVRY_ 0 0 0 REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3963012695312 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 117.71 1 113.21 112.71 113.71 -4.502 0 0 0 0.23698 1 23202 23202 1.3295 0.13619 1 + 55910 19793 36932 36953 54772 54772 0.015960934430268026 YYYRVPQYVRY 11 Unmodified _YYYRVPQYVRY_ 0 0 0 REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.394287109375 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 118.15 1 113.65 113.15 114.15 -4.502 0 0 0 0.23698 1 23289 23289 1.3295 0 1 + 55911 19793 36932 36953 54773 54773 0.015960934430268026 YYYRVPQYVRY 11 Unmodified _YYYRVPQYVRY_ 0 0 0 REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.39599609375 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 118.35 1 113.85 113.35 114.35 -4.502 0 0 0 0.22632 1 23337 23337 0.026206 0 1 + 55912 19793 36932 36953 54774 54774 0.015960934430268026 YYYRVPQYVRY 11 Unmodified _YYYRVPQYVRY_ 0 0 0 REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1 2 785.3955688476562 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 161.78 1 156.99 156.49 157.49 -4.7898 0 0 0 0.22632 1 32176 32176 0.026206 0 1 + 55913 19793 36932 36953 54775 54775 0.015960934430268026 YYYRVPQYVRY 11 Unmodified _YYYRVPQYVRY_ 0 0 0 REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 785.3951416015625 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 118.37 1 113.76 113.26 114.26 -4.6106 0 0 0 0.22632 1 22714 22714 0.026206 0 1 + 55914 19793 36932 36953 54776 54776 0.015960934430268026 YYYRVPQYVRY 11 Unmodified _YYYRVPQYVRY_ 0 0 0 REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF MSMS Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1 4 785.3956298828125 2 785.396076 1568.7776 NaN NaN NaN NaN NaN NaN NaN 167.65 1 162.76 162.26 163.26 -4.8916 0 0 0 0.23634 1 32997 32997 3.2813 0.54611 1 + 55915 19793 36932 36953 54777 54777 0.015960934430268026 YYYSDYSRQ 9 Unmodified _YYYSDYSRQ_ 0 0 0 REV__nc|ENSG00000158458|O14511-7|NRG2 REV__nc|ENSG00000158458|O14511-7|NRG2 MSMS Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1 3 622.7635498046875 2 622.76456 1243.51457 NaN NaN NaN NaN NaN NaN NaN 15.458 1 14.236 13.736 14.736 -1.2219 0 0 0 0.23508 1 2165 2165 1.4819 0 1 + 55916 17334 36933 36954 54778 54778 -0.0974494701263211